##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##fileDate=20260419
##source=freeBayes v1.3.10
##reference=/home/jforment/biovice/species/Cucumis_melo/v4.0/Melon_v4.0_PacBio.fasta
##contig=<ID=chr00,length=121315>
##contig=<ID=chr01,length=35851181>
##contig=<ID=chr02,length=26959513>
##contig=<ID=chr03,length=29257379>
##contig=<ID=chr04,length=33099074>
##contig=<ID=chr05,length=29075199>
##contig=<ID=chr06,length=36141931>
##contig=<ID=chr07,length=26578138>
##contig=<ID=chr08,length=33443462>
##contig=<ID=chr09,length=23938830>
##contig=<ID=chr10,length=25300170>
##contig=<ID=chr11,length=31951622>
##contig=<ID=chr12,length=26139556>
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##commandline="freebayes --bam-list bamfiles.BC1.txt --fasta-reference /home/jforment/biovice/species/Cucumis_melo/v4.0/Melon_v4.0_PacBio.fasta --min-alternate-count 3 --min-mapping-quality 10 --min-base-quality 20 --min-coverage 3"
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
##INFO=<ID=RO,Number=1,Type=Integer,Description="Count of full observations of the reference haplotype.">
##INFO=<ID=AO,Number=A,Type=Integer,Description="Count of full observations of this alternate haplotype.">
##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio.  Ratio between depth in samples with each called alternate allele and those without.">
##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing.  Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
##INFO=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Number of observation for each allele">
##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
##bcftools_viewVersion=1.23.1+htslib-1.23
##bcftools_viewCommand=view -S samples_order.BC1.v4.txt -Ov -o freebayes.BC1.v4.reordered.vcf freebayes.BC1.v4.vcf; Date=Mon Apr 20 12:09:48 2026
##SnpSiftVersion="SnpSift 5.4c (build 2026-02-23 07:25), by Pablo Cingolani"
##SnpSiftCmd="SnpSift Filter --file freebayes.BC1.v4.filter2.vcf.gz --exprfile /home/jforment/biovice/internal_projects/260313_cromero_mapping/00-rawdata/replicates_filter.expression.BC1.v4.txt"
##FILTER=<ID=SnpSift,Description="SnpSift 5.4c (build 2026-02-23 07:25), by Pablo Cingolani, Expression used: ((GEN['BC1-05_2019_A'].GT = GEN['BC1-05_2019_B'].GT) | (GEN['BC1-05_2019_A'].GT = '.') | (GEN['BC1-05_2019_B'].GT = '.')) & ((GEN['BC1-33_2019_A'].GT = GEN['BC1-33_2021_B'].GT) | (GEN['BC1-33_2019_A'].GT = '.') | (GEN['BC1-33_2021_B'].GT = '.')) & ((GEN['PAR_H_PxD_2021_A'].GT = GEN['PAR_H_PxD_2021_B'].GT) | (GEN['PAR_H_PxD_2021_A'].GT = '.') | (GEN['PAR_H_PxD_2021_B'].GT = '.')) & ((GEN['PAR_P2_D_2019_A'].GT = GEN['PAR_P2_D_2021_B'].GT) | (GEN['PAR_P2_D_2019_A'].GT = '.') | (GEN['PAR_P2_D_2021_B'].GT = '.'))">
##bcftools_filterVersion=1.23.1+htslib-1.23
##bcftools_filterCommand=filter --threads 50 --include 'F_PASS(GT[@/home/jforment/biovice/internal_projects/260313_cromero_mapping/00-rawdata/offspring_BC1.v4.txt]!='./.' & GT[@/home/jforment/biovice/internal_projects/260313_cromero_mapping/00-rawdata/offspring_BC1.v4.txt]!='.' & FORMAT/DP>=4) >= 0.90' freebayes.BC1.v4.filter3.vcf; Date=Wed Apr 29 19:24:16 2026
##bcftools_viewCommand=view --threads 50 --types snps freebayes.BC1.v4.filter4.0.90.vcf; Date=Tue May  5 11:08:54 2026
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	BC1-01_2019	BC1-02_2019	BC1-03_2019	BC1-04_2019	BC1-05_2019_A	BC1-05_2019_B	BC1-06_2019	BC1-07_2019	BC1-08_2019	BC1-09_2019	BC1-100_2021	BC1-101_2021	BC1-102_2021	BC1-103_2021	BC1-104_2021	BC1-105_2021	BC1-106_2021	BC1-107_2021	BC1-108_2021	BC1-10_2019	BC1-11_2019	BC1-12_2019	BC1-13_2019	BC1-14_2019	BC1-15_2019	BC1-16_2019	BC1-17_2019	BC1-18_2021	BC1-19_2019	BC1-20_2019	BC1-21_2019	BC1-22_2019	BC1-23_2019	BC1-24_2019	BC1-25_2019	BC1-26_2019	BC1-27_2021	BC1-28_2019	BC1-29_2021	BC1-30_2019	BC1-31_2019	BC1-32_2021	BC1-33_2019_A	BC1-33_2021_B	BC1-34_2021	BC1-35_2019	BC1-36_2019	BC1-37_2019	BC1-38_2019	BC1-39_2019	BC1-40_2019	BC1-41_2019	BC1-42_2019	BC1-43_2019	BC1-44_2019	BC1-45_2019	BC1-46_2019	BC1-47_2019	BC1-48_2019	BC1-49_2019	BC1-50_2021	BC1-51_2019	BC1-52_2019	BC1-53_2019	BC1-54_2019	BC1-55_2019	BC1-56_2019	BC1-57_2019	BC1-58_2021	BC1-65_2019	BC1-66_2021	BC1-67_2019	BC1-68_2019	BC1-69_2019	BC1-70_2019	BC1-71_2019	BC1-73_2019	BC1-74_2019	BC1-75_2019	BC1-76_2019	BC1-84_2019	BC1-85_2019	BC1-90_2021	BC1-93_2021	BC1-94_2021	BC1-95_2021	BC1-96_2021	BC1-97_2021	BC1-98_2021	BC1-99_2021	PAR_H_PxD_2021_A	PAR_H_PxD_2021_B	PAR_P2_D_2019_A	PAR_P2_D_2021_B
chr01	18390	.	A	G	30229.1	PASS	AB=0.493136;ABP=4.56037;AC=40;AF=0.212766;AN=188;AO=1875;CIGAR=1X;DP=8947;DPB=8947;DPRA=1.15536;EPP=4048.51;EPPR=15251.2;GTI=1;LEN=1;MEANALT=1.08889;MQM=44.5835;MQMR=58.4077;NS=94;NUMALT=1;ODDS=0.278564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66828;QR=253236;RO=7066;RPL=3;RPP=4048.51;RPPR=15259.9;RPR=1872;RUN=1;SAF=1875;SAP=4074.52;SAR=0;SRF=7065;SRP=15337.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:24,19:24:864:19:680:-47.9314,0,-65.0131	0/0:133:133,0:133:4753:0:0:0,-40.037,-427.155	0/0:153:153,0:153:5504:0:0:0,-46.0576,-495.37	0/0:296:293,2:293:10496:2:72:0,-82.4165,-937.044	0/0:118:118,0:118:4224:0:0:0,-35.5215,-380.033	0/0:84:84,0:84:2993:0:0:0,-25.2865,-267.797	0/0:194:193,1:193:6920:1:36:0,-54.8264,-618.71	0/0:136:136,0:136:4868:0:0:0,-40.9401,-437.89	0/0:102:101,0:101:3628:0:0:0,-30.404,-326.211	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.278	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5435	0/1:63:34,29:34:1220:29:1021:-72.2885,0,-91.0703	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.638	0/1:37:20,16:20:720:16:576:-40.2707,0,-53.8217	0/1:37:21,16:21:756:16:576:-40.3651,0,-57.1731	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.844	0/1:50:33,17:33:1188:17:612:-38.9631,0,-92.1413	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.1624	0/0:262:262,0:262:9393:0:0:0,-78.8699,-844.291	0/1:121:66,55:66:2376:55:1955:-134.801,0,-176.184	0/1:188:68,120:68:2439:120:4295:-323.316,0,-162.708	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.47	0/1:122:66,56:66:2364:56:1999:-139.993,0,-176.141	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.416	0/0:367:367,0:367:13148:0:0:0,-110.478,-1181.11	0/1:228:129,99:129:4628:99:3504:-241.96,0,-347.513	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.276	0/0:413:412,0:412:14778:0:0:0,-124.024,-1327.48	0/0:179:179,0:179:6399:0:0:0,-53.8844,-574.392	0/1:139:77,62:77:2760:62:2203:-150.641,0,-206.475	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:7:3,4:3:108:4:144:-11.0597,0,-7.96796	0/1:5:4,1:4:144:1:36:-2.05347,0,-11.8085	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6793	0/0:151:151,0:151:5424:0:0:0,-45.4555,-487.195	0/1:179:107,72:107:3828:72:2558:-172.789,0,-290.554	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.2818	0/1:6:1,5:1:36:5:180:-14.2388,0,-1.79209	0/1:187:88,99:88:3156:99:3529:-256.108,0,-226.19	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5607	0/0:190:190,0:190:6805:0:0:0,-57.1957,-611.487	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.135	0/1:35:20,15:20:720:15:532:-36.6054,0,-54.5871	0/0:138:138,0:138:4924:0:0:0,-41.5421,-442.834	0/1:89:49,40:49:1760:40:1423:-100.224,0,-131.436	0/1:171:104,67:104:3713:67:2375:-159.759,0,-282.251	0/0:94:94,0:94:3372:0:0:0,-28.2968,-301.435	0/1:80:41,39:41:1476:39:1396:-99.5294,0,-108.857	0/0:218:218,0:218:7792:0:0:0,-65.6245,-700.727	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2167	0/1:114:65,49:65:2336:49:1748:-120.582,0,-176.112	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.129	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.538	0/0:113:113,0:113:4060:0:0:0,-34.0164,-364.824	0/0:68:68,0:68:2432:0:0:0,-20.47,-218.902	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0153	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.276	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.138	0/1:101:36,65:36:1292:65:2332:-175.679,0,-86.1313	0/1:12:2,10:2:72:10:356:-28.3427,0,-3.22352	0/1:151:65,85:65:2328:85:3006:-219.83,0,-164.134	0/1:187:91,96:91:3276:96:3413:-245.993,0,-238.497	0/0:69:67,2:67:2404:2:72:0,-14.0289,-209.729	0/0:73:73,0:73:2583:0:0:0,-21.9752,-232.121	0/1:172:86,86:86:3084:86:3084:-221.263,0,-225.936	0/0:71:71,0:71:2543:0:0:0,-21.3731,-228.907	0/1:17:9,8:9:324:8:288:-20.7867,0,-24.3657	0/1:58:30,28:30:1080:28:1004:-71.0548,0,-79.9811	0/1:61:25,36:25:896:36:1279:-94.7002,0,-62.5492	0/1:24:5,19:5:180:19:674:-52.1854,0,-9.3257	0/1:182:80,102:80:2864:102:3629:-266.375,0,-203.146	0/1:43:21,22:21:756:22:788:-56.7638,0,-55.3871	0/0:152:151,1:151:5409:1:36:0,-42.208,-482.324	0/1:142:67,75:67:2393:75:2688:-195.261,0,-172.72	0/0:118:118,0:118:4232:0:0:0,-35.5215,-380.853	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.552	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0161	0/0:107:106,1:106:3816:1:36:0,-28.6617,-339.267	0/1:83:45,38:45:1608:38:1368:-95.5705,0,-119.643	0/1:268:155,112:155:5541:112:3974:-270.6,0,-416.774	0/1:94:48,46:48:1728:46:1623:-115.646,0,-127.405	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.453	0/1:55:24,31:24:864:31:1100:-81.0891,0,-60.889	0/1:106:52,54:52:1868:54:1940:-139.729,0,-136.471	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9196	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.069	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.167	0/1:25:15,10:15:540:10:356:-24.4385,0,-41.298	0/1:68:29,39:29:1040:39:1400:-104.136,0,-73.3544	0/1:38:12,26:12:428:26:932:-71.6333,0,-27.3703	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5026	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.108
chr01	60284	.	T	A	99059.6	PASS	AB=0.613803;ABP=249.141;AC=149;AF=0.801075;AN=186;AO=4433;CIGAR=1X;DP=5286;DPB=5286;DPRA=0;EPP=8879.96;EPPR=1726.99;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.654;MQMR=57.8174;NS=93;NUMALT=1;ODDS=4.12583;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158368;QR=30338;RO=849;RPL=88;RPP=8879.96;RPPR=1726.99;RPR=4345;RUN=1;SAF=4433;SAP=9629.15;SAR=0;SRF=849;SRP=1846.59;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:11,12:11:396:12:428:-31.9187,0,-29.0331	1/1:78:0,78:0:0:78:2796:-251.83,-23.4803,0	1/1:73:0,73:0:0:73:2612:-234.977,-21.9752,0	1/1:128:0,128:0:0:128:4589:-413.159,-38.5318,0	1/1:44:0,44:0:0:44:1565:-141.131,-13.2453,0	1/1:24:0,24:0:0:24:853:-77.0864,-7.22472,0	1/1:68:0,68:0:0:68:2421:-218.135,-20.47,0	1/1:94:1,93:1:36:93:3306:-294.137,-24.7011,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:49:1,48:1:36:48:1712:-150.804,-11.1919,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:47:21,26:21:756:26:932:-70.0505,0,-54.1641	1/1:56:0,56:0:0:56:2004:-180.625,-16.8577,0	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.1604	0/1:36:23,13:23:809:13:460:-30.8974,0,-62.2507	1/1:30:0,30:0:0:30:1071:-96.6746,-9.0309,0	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	0/1:41:22,19:22:792:19:680:-49.1869,0,-59.1124	1/1:14:0,14:0:0:14:489:-44.3377,-4.21442,0	1/1:121:0,121:0:0:121:4328:-389.669,-36.4246,0	0/1:74:35,39:35:1251:39:1392:-103.303,0,-90.4148	0/1:77:41,36:41:1456:36:1276:-91.9628,0,-108.026	1/1:38:0,38:0:0:38:1360:-122.697,-11.4391,0	0/1:62:28,34:28:1004:34:1224:-91.7894,0,-71.7847	1/1:39:0,39:0:0:39:1400:-126.29,-11.7402,0	1/1:191:0,191:0:0:191:6802:-612.245,-57.4967,0	0/1:114:63,51:63:2252:51:1804:-128.317,0,-168.127	1/1:25:0,25:0:0:25:896:-80.9476,-7.52575,0	1/1:221:0,221:0:0:221:7923:-713.031,-66.5276,0	1/1:71:0,71:0:0:71:2548:-229.542,-21.3731,0	0/1:41:17,24:17:600:24:845:-64.0192,0,-41.9138	1/1:4:0,4:0:0:4:144:-13.3089,-1.20412,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	.:.:.:.:.:.:.:.	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99362	1/1:12:0,12:0:0:12:424:-38.4882,-3.61236,0	1/1:170:0,170:0:0:170:6082:-547.346,-51.1751,0	0/1:100:35,65:35:1252:65:2332:-180.037,0,-82.7361	1/1:42:0,42:0:0:42:1484:-133.827,-12.6433,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:59:23,36:23:820:36:1267:-96.4938,0,-56.1746	1/1:31:0,31:0:0:31:1116:-100.747,-9.33193,0	1/1:92:0,90:0:0:90:3228:-290.157,-27.0927,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	0/1:42:23,19:23:800:19:684:-49.2447,0,-59.6348	1/1:55:0,55:0:0:55:1963:-176.938,-16.5567,0	0/1:53:15,38:15:536:38:1364:-107.106,0,-32.5718	0/1:116:23,93:23:820:93:3319:-264.006,0,-39.2021	1/1:97:0,97:0:0:97:3484:-313.629,-29.1999,0	0/1:53:10,43:10:352:43:1529:-121.942,0,-16.0636	1/1:151:0,150:0:0:150:5352:-481.367,-45.1545,0	1/1:4:0,4:0:0:4:144:-13.3132,-1.20412,0	0/1:56:14,42:14:504:42:1508:-119.149,0,-28.7983	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:15:0,15:0:0:15:529:-47.9377,-4.51545,0	1/1:104:0,104:0:0:104:3711:-334.178,-31.3071,0	1/1:40:0,40:0:0:40:1436:-129.529,-12.0412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:13:0,13:0:0:13:468:-42.453,-3.91339,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:67:27,40:27:972:40:1440:-109.726,0,-67.5744	1/1:3:0,3:0:0:3:108:-10.057,-0.90309,0	0/1:113:44,69:44:1576:69:2472:-188.716,0,-106.888	0/1:68:11,57:11:396:57:2029:-162.392,0,-15.5127	1/1:27:2,25:2:72:25:887:-72.9802,-1.293,0	1/1:55:0,55:0:0:55:1972:-176.733,-16.5567,0	0/1:81:31,50:31:1104:50:1783:-136.362,0,-75.2756	1/1:57:0,57:0:0:57:2001:-180.318,-17.1587,0	0/1:13:9,4:9:324:4:144:-9.39551,0,-25.4512	0/1:58:18,40:18:640:40:1432:-111.71,0,-40.4278	0/1:63:29,34:29:1040:34:1212:-90.361,0,-74.9022	0/1:13:7,6:7:248:6:208:-15.1457,0,-18.7508	0/1:34:12,22:12:428:22:784:-60.4501,0,-28.5969	0/1:36:9,27:9:315:27:968:-76.6003,0,-17.6592	1/1:89:0,89:0:0:89:3192:-287.407,-26.7917,0	0/1:132:42,90:42:1508:90:3220:-250.277,0,-96.2053	1/1:68:0,68:0:0:68:2428:-218.734,-20.47,0	1/1:50:0,50:0:0:50:1792:-161.356,-15.0515,0	1/1:6:0,6:0:0:6:216:-19.7822,-1.80618,0	1/1:102:0,102:0:0:102:3654:-329.025,-30.7051,0	0/1:48:15,33:15:532:33:1184:-92.3862,0,-33.6492	0/1:132:35,97:35:1256:97:3445:-270.396,0,-73.465	0/1:69:14,55:14:504:55:1972:-156.971,0,-24.927	1/1:33:0,33:0:0:33:1184:-106.864,-9.93399,0	0/1:37:20,17:20:720:17:597:-42.9176,0,-53.9828	0/1:94:45,49:45:1603:49:1743:-128.853,0,-116.172	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:46:0,46:0:0:46:1644:-148.224,-13.8474,0	1/1:36:0,36:0:0:36:1292:-116.553,-10.8371,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.2996	0/1:59:29,30:29:1044:30:1080:-79.7479,0,-76.3772	0/1:33:24,9:24:864:9:324:-19.5636,0,-67.9548	1/1:67:0,66:0:0:66:2356:-211.938,-19.868,0	1/1:65:0,65:0:0:65:2325:-209.504,-19.567,0
chr01	60294	.	G	A	12545.6	PASS	AB=0.389118;ABP=236.565;AC=37;AF=0.198925;AN=186;AO=855;CIGAR=1X;DP=5277;DPB=5277;DPRA=1.06871;EPP=1850.94;EPPR=9605.26;GTI=1;LEN=1;MEANALT=1;MQM=57.7789;MQMR=59.69;NS=93;NUMALT=1;ODDS=3.92694;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30541;QR=156980;RO=4422;RPL=854;RPP=1850.94;RPPR=9605.26;RPR=1;RUN=1;SAF=855;SAP=1859.62;SAR=0;SRF=4422;SRP=9605.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:13,13:13:464:13:468:-34.5202,0,-34.2592	0/0:80:80,0:80:2863:0:0:0,-24.0824,-257.857	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.152	0/0:127:127,0:127:4509:0:0:0,-38.2308,-405.968	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.516	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.8736	0/0:65:65,0:65:2318:0:0:0,-19.5669,-208.863	0/0:94:93,1:93:3319:1:36:0,-24.7011,-295.31	0/0:20:20,0:20:695:0:0:0,-6.0206,-62.8677	0/0:48:47,1:47:1688:1:34:0,-11.076,-148.831	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/1:47:27,20:27:944:20:720:-50.9257,0,-71.1229	0/0:57:57,0:57:2024:0:0:0,-17.1587,-182.425	0/1:33:17,16:17:594:16:576:-42.0956,0,-43.8516	0/1:36:13,23:13:464:23:811:-62.4364,0,-31.2581	0/0:31:31,0:31:1075:0:0:0,-9.33193,-97.0498	0/0:38:38,0:38:1327:0:0:0,-11.4391,-119.726	0/1:40:18,22:18:640:22:784:-58.7625,0,-45.8881	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0615	0/0:121:121,0:121:4278:0:0:0,-36.4246,-385.175	0/1:73:38,35:38:1342:35:1252:-90.8069,0,-99.1034	0/1:73:34,39:34:1196:39:1400:-104.193,0,-85.9665	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.765	0/1:58:30,28:30:1059:28:1004:-72.9888,0,-78.1496	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.173	0/0:196:196,0:196:7019:0:0:0,-59.0019,-631.762	0/1:114:48,66:48:1687:66:2362:-177.313,0,-117.791	0/0:25:25,0:25:872:0:0:0,-7.52575,-78.7808	0/0:223:223,0:223:7966:0:0:0,-67.1297,-716.954	0/0:74:74,0:74:2602:0:0:0,-22.2762,-234.398	0/1:42:23,19:23:828:19:668:-47.7282,0,-62.1962	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3089	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	.:.:.:.:.:.:.:.	0/1:2:1,1:1:36:1:36:-2.99362,0,-2.99621	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4882	0/0:166:166,0:166:5851:0:0:0,-49.971,-526.698	0/1:99:64,35:64:2296:35:1256:-83.3959,0,-176.828	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.034	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:60:37,23:37:1324:23:824:-56.2338,0,-101.391	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.979	0/0:90:90,0:90:3201:0:0:0,-27.0927,-288.088	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.976	0/1:41:18,23:18:611:23:828:-62.466,0,-42.9642	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.088	0/1:54:39,15:39:1400:15:536:-32.2815,0,-110.044	0/1:116:92,24:92:3296:24:864:-43.1622,0,-261.937	0/0:99:99,0:99:3534:0:0:0,-29.802,-318.257	0/1:57:46,11:46:1640:11:388:-18.0987,0,-130.723	0/0:152:152,0:152:5435:0:0:0,-45.7566,-488.775	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3132	0/1:54:41,13:41:1472:13:468:-26.1643,0,-116.512	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.0859	0/0:104:104,0:104:3714:0:0:0,-31.3071,-334.443	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.48	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8555	0/0:36:36,0:36:1270:0:0:0,-10.8371,-114.601	0/1:65:39,26:39:1400:26:932:-64.5836,0,-106.73	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.057	0/1:113:70,43:70:2503:43:1533:-103.838,0,-191.505	0/1:68:57,11:57:2029:11:392:-15.15,0,-162.402	0/0:27:25,2:25:888:2:72:0,-1.293,-72.4507	0/0:55:55,0:55:1951:0:0:0,-16.5566,-175.865	0/1:83:53,30:53:1883:30:1076:-72.1558,0,-144.735	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.833	0/1:13:4,9:4:144:9:320:-25.1612,0,-9.39551	0/1:61:42,19:42:1488:19:676:-42.7611,0,-115.844	0/1:60:31,29:31:1080:29:1040:-75.8067,0,-79.4178	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:35:23,12:23:807:12:432:-28.6569,0,-62.2144	0/1:37:28,9:28:996:9:320:-17.8127,0,-78.8154	0/0:91:91,0:91:3220:0:0:0,-27.3937,-289.694	0/1:132:89,43:89:3168:43:1540:-99.0843,0,-245.6	0/0:66:66,0:66:2333:0:0:0,-19.868,-210.191	0/0:49:49,0:49:1715:0:0:0,-14.7505,-154.62	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7822	0/0:100:100,0:100:3561:0:0:0,-30.103,-320.655	0/1:52:37,15:37:1328:15:532:-32.4451,0,-104.006	0/1:133:98,35:98:3443:35:1241:-71.8711,0,-269.959	0/1:69:54,15:54:1905:15:540:-28.1517,0,-150.946	0/0:33:33,0:33:1157:0:0:0,-9.93399,-104.43	0/1:37:17,20:17:608:20:712:-53.2621,0,-43.9135	0/1:91:46,45:46:1613:45:1589:-115.814,0,-118.056	0/0:35:35,0:35:1228:0:0:0,-10.536,-110.821	0/0:43:43,0:43:1482:0:0:0,-12.9443,-133.653	0/0:36:36,0:36:1252:0:0:0,-10.8371,-112.968	0/1:10:6,4:6:207:4:144:-10.2996,0,-15.9566	0/1:57:28,29:28:996:29:1032:-75.9591,0,-72.7916	0/1:32:8,24:8:284:24:851:-67.184,0,-16.2621	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.26	0/0:64:64,0:64:2239:0:0:0,-19.2659,-201.768
chr01	60451	.	G	T	24024.9	PASS	AB=0.464762;ABP=36.9845;AC=39;AF=0.209677;AN=186;AO=1475;CIGAR=1X;DP=6733;DPB=6733;DPRA=1.39072;EPP=3205.93;EPPR=11420.6;GTI=1;LEN=1;MEANALT=1;MQM=59.3912;MQMR=59.8547;NS=93;NUMALT=1;ODDS=2.26045;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52836;QR=187970;RO=5258;RPL=1475;RPP=3205.93;RPPR=11420.6;RPR=0;RUN=1;SAF=0;SAP=3205.93;SAR=1475;SRF=0;SRP=11420.6;SRR=5258;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:4,6:4:144:6:216:-16.7444,0,-10.3033	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.609	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.589	0/0:187:187,0:187:6692:0:0:0,-56.2926,-601.579	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4818	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5488	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.26	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.442	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.833	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.208	0/0:88:88,0:88:3142:0:0:0,-26.4906,-283.004	0/1:61:28,33:28:1000:33:1184:-88.4749,0,-71.9525	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.916	0/1:86:45,41:45:1607:41:1476:-107.213,0,-119.03	0/1:53:18,35:18:648:35:1256:-97.3907,0,-42.6973	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.181	0/1:54:29,25:29:1040:25:900:-65.0478,0,-77.6278	0/0:59:59,0:59:2099:0:0:0,-17.7608,-189.168	0/0:161:161,0:161:5768:0:0:0,-48.4658,-519.23	0/1:37:18,19:18:648:19:684:-50.633,0,-47.5138	0/1:65:21,44:21:735:44:1565:-121.548,0,-46.9045	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.689	0/1:54:42,12:42:1496:12:428:-22.595,0,-118.676	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:209:207,2:207:7400:2:72:0,-56.0785,-659.207	0/1:155:93,62:93:3332:62:2232:-154.469,0,-253.414	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0139	0/0:246:246,0:246:8808:0:0:0,-74.0534,-792.665	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.76	0/1:41:22,19:22:792:19:665:-47.6723,0,-59.2634	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	.:.:.:.:.:.:.:.	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7067	0/0:169:169,0:169:6064:0:0:0,-50.8741,-545.787	0/1:139:78,61:78:2784:61:2187:-155.229,0,-208.952	0/0:104:104,0:104:3705:0:0:0,-31.3071,-333.648	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:124:62,62:62:2216:62:2224:-163.079,0,-162.36	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.953	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:54:32,22:32:1143:22:780:-53.9478,0,-86.9231	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:76:40,36:40:1424:36:1292:-93.6964,0,-105.568	0/1:110:66,44:66:2356:44:1580:-108.802,0,-179.178	0/0:85:83,2:83:2963:2:72:0,-18.7508,-260.06	0/1:110:71,39:71:2543:39:1370:-90.466,0,-195.993	0/0:133:131,2:131:4679:2:72:0,-33.2003,-414.43	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:305:146,159:146:5204:159:5682:-419.565,0,-376.685	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3446	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:100:100,0:100:3559:0:0:0,-30.103,-320.439	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1837	0/0:41:41,0:41:1456:0:0:0,-12.3422,-131.336	0/1:146:71,75:71:2535:75:2688:-198.146,0,-184.45	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:153:100,53:100:3576:53:1908:-125.905,0,-275.99	0/1:83:51,32:51:1827:32:1152:-79.0047,0,-139.694	0/0:42:41,1:41:1457:1:36:0,-9.04498,-127.821	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.814	0/1:72:53,19:53:1900:19:680:-39.855,0,-149.603	0/0:45:44,1:44:1576:1:36:0,-9.94807,-138.533	0/1:29:14,15:14:489:15:536:-39.824,0,-35.609	0/1:60:44,16:44:1580:16:576:-34.0568,0,-124.43	0/1:90:39,51:39:1396:51:1826:-137.525,0,-98.846	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:66:36,30:36:1267:30:1076:-77.2673,0,-94.458	0/1:47:25,22:25:873:22:792:-57.422,0,-64.6289	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.659	0/1:105:47,58:47:1688:58:2084:-156.201,0,-120.599	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.773	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.59	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:107:107,0:107:3827:0:0:0,-32.2102,-344.626	0/1:93:51,42:51:1832:42:1508:-107.987,0,-137.162	0/1:141:98,43:98:3492:43:1544:-96.7742,0,-272.045	0/1:84:34,50:34:1212:50:1796:-136.47,0,-84.0998	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:62:31,31:31:1112:31:1112:-81.6305,0,-81.7168	0/1:112:50,62:50:1796:62:2223:-166.602,0,-128.207	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.435	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.553	0/0:56:56,0:56:1985:0:0:0,-16.8577,-178.921	0/1:81:57,24:57:2039:24:860:-53.3199,0,-159.396	0/1:124:49,75:49:1764:75:2683:-204.371,0,-121.716	0/1:61:17,44:17:599:44:1571:-123.303,0,-35.8753	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.72
chr01	163996	.	ATAG	CTAT,CTAG	78288.8	PASS	AB=0.473111,0.524166;ABP=12.2357,10.4619;AC=147,37;AF=0.798913,0.201087;AN=184;AO=2618,770;CIGAR=1X2M1X,1X3M;DP=3400;DPB=3400;DPRA=0,1.13084;EPP=4788.55,486.363;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.53261,2.10811;MQM=44.6868,47.8831;MQMR=0;NS=92;NUMALT=2;ODDS=0.539103;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=92647,27426;QR=0;RO=0;RPL=2511,592;RPP=4796.52,486.363;RPPR=0;RPR=107,178;RUN=1,1;SAF=1,0;SAP=5679.24,1675.04;SAR=2617,770;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:14:0,8,6:0:0:8,6:286,201:-39.6094,-16.5745,-14.1663,-23.3773,0,-21.5711	1/1:19:0,18,0:0:0:18,0:640,0:-55.9533,-5.41854,0,-55.9533,-5.41854,-55.9533	1/1:81:0,81,0:0:0:81,0:2858,0:-252.903,-24.3834,0,-252.903,-24.3834,-252.903	1/1:75:0,75,0:0:0:75,0:2634,0:-233.633,-22.5773,0,-233.633,-22.5773,-233.633	1/1:24:0,24,0:0:0:24,0:840,0:-73.7445,-7.22472,0,-73.7445,-7.22472,-73.7445	1/1:5:0,5,0:0:0:5,0:180,0:-16.3232,-1.50515,0,-16.3232,-1.50515,-16.3232	1/1:46:0,46,0:0:0:46,0:1649,0:-145.736,-13.8474,0,-145.736,-13.8474,-145.736	1/1:23:0,23,0:0:0:23,0:807,0:-72.0169,-6.92369,0,-72.0169,-6.92369,-72.0169	1/1:51:0,50,0:0:0:50,0:1733,0:-152.179,-15.0515,0,-152.179,-15.0515,-152.179	1/1:33:0,32,0:0:0:32,0:1135,0:-98.8389,-9.63296,0,-98.8389,-9.63296,-98.8389	1/1:18:0,18,0:0:0:18,0:628,0:-55.0312,-5.41854,0,-55.0312,-5.41854,-55.0312	1/2:40:0,16,24:0:0:16,24:576,860:-116.787,-70.4613,-65.6448,-46.6821,0,-39.4574	1/1:37:0,37,0:0:0:37,0:1312,0:-116.038,-11.1381,0,-116.038,-11.1381,-116.038	1/2:17:0,7,10:0:0:7,10:252,353:-48.6475,-28.5087,-26.4015,-20.4891,0,-17.4788	1/2:21:0,9,12:0:0:9,12:317,432:-60.3694,-35.0665,-32.3572,-25.6526,0,-22.0403	1/1:21:0,21,0:0:0:21,0:738,0:-65.9811,-6.32163,0,-65.9811,-6.32163,-65.9811	1/1:9:0,9,0:0:0:9,0:317,0:-28.0538,-2.70927,0,-28.0538,-2.70927,-28.0538	1/2:9:0,4,4:0:0:4,4:137,144:-22.7812,-11.7986,-10.5945,-11.0185,0,-9.81443	1/1:12:0,11,0:0:0:11,0:396,0:-34.43,-3.31133,0,-34.43,-3.31133,-34.43	1/1:101:0,101,0:0:0:101,0:3586,0:-316.872,-30.404,0,-316.872,-30.404,-316.872	1/2:64:0,28,36:0:0:28,36:981,1293:-181.839,-103.727,-95.2984,-78.4591,0,-67.622	1/2:39:0,9,30:0:0:9,30:320,1076:-111.864,-86.5464,-83.8372,-25.6646,0,-16.6337	1/1:36:0,36,0:0:0:36,0:1271,0:-110.386,-10.8371,0,-110.386,-10.8371,-110.386	1/2:38:0,22,16:0:0:22,16:773,576:-108.555,-46.4987,-39.876,-62.4068,0,-57.5904	1/1:69:0,69,0:0:0:69,0:2435,0:-216.219,-20.7711,0,-216.219,-20.7711,-216.219	1/1:202:0,202,0:0:0:202,0:7114,0:-628.143,-60.8081,0,-628.143,-60.8081,-628.143	1/2:91:0,50,40:0:0:50,40:1780,1425:-254.946,-114.316,-99.2642,-140.687,0,-128.646	1/1:15:0,15,0:0:0:15,0:537,0:-48.0516,-4.51545,0,-48.0516,-4.51545,-48.0516	1/1:121:0,121,0:0:0:121,0:4297,0:-380.776,-36.4246,0,-380.776,-36.4246,-380.776	1/1:22:0,22,0:0:0:22,0:775,0:-69.3078,-6.62266,0,-69.3078,-6.62266,-69.3078	1/2:35:0,14,21:0:0:14,21:496,750:-99.236,-60.1059,-55.8915,-39.4763,0,-33.1547	1/1:8:0,8,0:0:0:8,0:272,0:-24.5221,-2.40824,0,-24.5221,-2.40824,-24.5221	1/1:9:0,9,0:0:0:9,0:317,0:-28.5039,-2.70927,0,-28.5039,-2.70927,-28.5039	1/1:1:0,1,0:0:0:1,0:36,0:-3.54852,-0.30103,0,-3.54852,-0.30103,-3.54852	1/2:7:0,3,4:0:0:3,4:105,144:-20.537,-12.1095,-11.2064,-8.77927,0,-7.57515	1/1:1:0,1,0:0:0:1,0:36,0:-3.54852,-0.30103,0,-3.54852,-0.30103,-3.54852	1/1:89:0,88,0:0:0:88,0:3130,0:-276.504,-26.4906,0,-276.504,-26.4906,-276.504	1/2:72:0,36,36:0:0:36,36:1276,1273:-204.14,-102.097,-91.2599,-102.391,0,-91.5536	1/1:7:0,7,0:0:0:7,0:250,0:-22.5737,-2.10721,0,-22.5737,-2.10721,-22.5737	.:.:.:.:.:.:.:.	1/2:50:0,28,22:0:0:28,22:982,789:-142.327,-63.5408,-55.112,-79.1354,0,-72.5128	1/1:8:0,8,0:0:0:8,0:286,0:-25.7384,-2.40824,0,-25.7384,-2.40824,-25.7384	1/1:42:0,42,0:0:0:42,0:1477,0:-131.377,-12.6433,0,-131.377,-12.6433,-131.377	1/1:9:0,9,0:0:0:9,0:322,0:-28.8366,-2.70927,0,-28.8366,-2.70927,-28.8366	1/2:24:0,16,8:0:0:16,8:569,288:-69.0834,-23.5413,-18.7248,-45.8957,0,-43.4874	1/1:62:0,62,0:0:0:62,0:2182,0:-192.345,-18.6639,0,-192.345,-18.6639,-192.345	1/2:25:0,14,11:0:0:14,11:478,392:-70.5903,-32.3087,-28.0943,-38.6295,0,-35.3181	1/2:54:0,23,31:0:0:23,31:823,1088:-153.196,-87.3932,-80.4695,-66.1515,0,-56.8195	1/1:29:0,29,0:0:0:29,0:1038,0:-91.4983,-8.72987,0,-91.4983,-8.72987,-91.4983	1/2:48:0,27,20:0:0:27,20:957,716:-133.74,-57.6158,-49.488,-76.2093,0,-70.1887	1/1:84:0,84,0:0:0:84,0:2952,0:-262.022,-25.2865,0,-262.022,-25.2865,-262.022	1/1:10:0,10,0:0:0:10,0:352,0:-31.5298,-3.0103,0,-31.5298,-3.0103,-31.5298	1/2:50:0,18,32:0:0:18,32:641,1152:-145.893,-94.3572,-88.9386,-51.8901,0,-42.2572	1/1:25:0,25,0:0:0:25,0:899,0:-80.0222,-7.52575,0,-80.0222,-7.52575,-80.0222	1/1:3:0,3,0:0:0:3,0:108,0:-9.93584,-0.90309,0,-9.93584,-0.90309,-9.93584	1/1:41:0,41,0:0:0:41,0:1429,0:-127.082,-12.3422,0,-127.082,-12.3422,-127.082	1/1:8:0,8,0:0:0:8,0:275,0:-24.7811,-2.40824,0,-24.7811,-2.40824,-24.7811	1/1:7:0,7,0:0:0:7,0:252,0:-22.7105,-2.10721,0,-22.7105,-2.10721,-22.7105	1/1:12:0,12,0:0:0:12,0:430,0:-38.2312,-3.61236,0,-38.2312,-3.61236,-38.2312	1/1:21:0,21,0:0:0:21,0:7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chr01	164023	.	A	T	12683.9	PASS	AB=0.527683;ABP=12.7485;AC=37;AF=0.201087;AN=184;AO=772;CIGAR=1X;DP=3370;DPB=3370;DPRA=1.14039;EPP=1679.39;EPPR=5642.32;GTI=1;LEN=1;MEANALT=1;MQM=47.9262;MQMR=44.7216;NS=92;NUMALT=1;ODDS=0.735784;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27691;QR=93003;RO=2597;RPL=772;RPP=1679.39;RPPR=5642.32;RPR=0;RUN=1;SAF=0;SAP=1679.39;SAR=772;SRF=0;SRP=5642.32;SRR=2597;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:7,6:7:252:6:216:-15.8408,0,-18.8426	0/0:17:17,0:17:604:0:0:0,-5.11751,-53.0029	0/0:80:80,0:80:2868:0:0:0,-24.0824,-253.618	0/0:74:74,0:74:2656:0:0:0,-22.2762,-235.34	0/0:23:23,0:23:820:0:0:0,-6.92369,-72.8924	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.3232	0/0:46:46,0:46:1648:0:0:0,-13.8474,-145.509	0/0:22:22,0:22:788:0:0:0,-6.62266,-70.281	0/0:50:50,0:50:1788:0:0:0,-15.0515,-157.604	0/0:32:32,0:32:1152:0:0:0,-9.63296,-101.614	0/0:17:17,0:17:608:0:0:0,-5.11751,-53.145	0/1:40:16,24:16:572:24:856:-65.3052,0,-39.1223	0/0:36:36,0:36:1292:0:0:0,-10.8371,-114.166	0/1:17:7,10:7:252:10:360:-26.8779,0,-17.4788	0/1:21:9,12:9:324:12:432:-32.3572,0,-22.5393	0/0:21:21,0:21:756:0:0:0,-6.32163,-67.5284	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.9042	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.6597	0/0:12:12,0:12:428:0:0:0,-3.61236,-37.5822	0/0:100:100,0:100:3592:0:0:0,-30.103,-316.948	0/1:62:27,35:27:953:35:1256:-92.4853,0,-65.4379	0/1:41:9,32:9:320:32:1140:-89.0047,0,-16.1639	0/0:35:35,0:35:1248:0:0:0,-10.536,-109.461	0/1:37:22,15:22:788:15:536:-36.6216,0,-59.1429	0/0:69:69,0:69:2465:0:0:0,-20.7711,-218.708	0/0:200:200,0:200:7176:0:0:0,-60.206,-632.159	0/1:92:51,41:51:1832:41:1461:-102.015,0,-132.66	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.3049	0/0:121:121,0:121:4332:0:0:0,-36.4246,-383.686	0/0:21:21,0:21:748:0:0:0,-6.32163,-66.8878	0/1:34:13,21:13:468:21:756:-56.4179,0,-31.0932	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.5484	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.0978	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.54852	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.82863	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.54852	0/0:88:88,0:88:3148:0:0:0,-26.4906,-278.88	0/1:72:36,36:36:1288:36:1285:-92.1425,0,-92.5345	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.3912	.:.:.:.:.:.:.:.	0/1:50:28,22:28:1004:22:792:-55.2246,0,-74.3918	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.9042	0/0:41:41,0:41:1472:0:0:0,-12.3422,-130.5	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.6658	0/1:24:15,9:15:540:9:324:-21.9184,0,-40.8666	0/0:61:61,0:61:2188:0:0:0,-18.3628,-192.662	0/1:24:13,11:13:468:11:396:-28.758,0,-34.6478	0/1:51:22,29:22:784:29:1044:-77.2045,0,-54.2864	0/0:30:30,0:30:1080:0:0:0,-9.0309,-95.1776	0/1:48:27,21:27:964:21:756:-53.0055,0,-70.5619	0/0:83:83,0:83:2976:0:0:0,-24.9855,-263.421	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.1787	0/1:49:17,32:17:604:32:1152:-89.2397,0,-39.2655	0/0:25:25,0:25:900:0:0:0,-7.52575,-80.1035	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.93584	0/0:41:41,0:41:1461:0:0:0,-12.3422,-129.253	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.5395	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.7105	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.3962	0/0:21:21,0:21:756:0:0:0,-6.32163,-67.0649	0/1:54:23,31:23:828:31:1116:-82.3802,0,-57.0335	.:.:.:.:.:.:.:.	0/1:69:38,31:38:1364:31:1112:-77.924,0,-100.228	0/1:94:43,51:43:1540:51:1832:-133.824,0,-107.054	0/0:29:29,0:29:1032:0:0:0,-8.72987,-91.6126	0/0:20:20,0:20:708:0:0:0,-6.0206,-63.0866	0/1:64:29,35:29:1044:35:1260:-91.4401,0,-71.8864	0/0:59:59,0:59:2108:0:0:0,-17.7608,-186.117	0/1:10:5,5:5:180:5:180:-13.3129,0,-13.3129	0/1:14:6,8:6:216:8:288:-22.0168,0,-15.348	0/1:29:12,17:12:432:17:612:-45.6357,0,-29.5906	0/1:8:2,6:2:72:6:216:-17.1086,0,-4.31039	0/1:70:33,37:33:1176:37:1313:-97.3591,0,-83.5304	0/1:27:11,16:11:392:16:572:-43.6856,0,-27.0665	0/0:41:41,0:41:1472:0:0:0,-12.3422,-130.549	0/1:44:25,19:25:900:19:680:-47.473,0,-66.4201	0/0:25:25,0:25:892:0:0:0,-7.52575,-78.1933	0/0:23:23,0:23:816:0:0:0,-6.92369,-72.913	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.3828	0/0:31:31,0:31:1116:0:0:0,-9.33193,-97.7946	0/1:36:14,22:14:485:22:792:-60.7686,0,-32.5531	0/1:82:48,34:48:1720:34:1224:-82.9662,0,-127.775	0/1:38:20,18:20:720:18:648:-46.4017,0,-52.1183	0/0:21:21,0:21:748:0:0:0,-6.32163,-66.3155	0/1:20:8,12:8:288:12:428:-32.341,0,-19.7931	0/1:43:24,19:24:860:19:684:-47.907,0,-63.5179	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.1113	0/0:25:24,0:24:860:0:0:0,-7.22472,-75.4986	0/0:35:35,0:35:1251:0:0:0,-10.536,-110.519	0/1:8:3,5:3:104:5:180:-13.1332,0,-7.18251	0/1:37:14,23:14:504:23:828:-62.716,0,-33.5884	0/1:25:6,19:6:216:19:676:-52.8393,0,-11.9229	0/0:69:69,0:69:2460:0:0:0,-20.7711,-217.197	0/0:33:33,0:33:1184:0:0:0,-9.93399,-104.753
chr01	164078	.	T	G	205192	PASS	AB=0.554545;ABP=133.772;AC=149;AF=0.792553;AN=188;AO=9524;CIGAR=1X;DP=11788;DPB=11788;DPRA=0;EPP=20623.4;EPPR=4893.18;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9188;MQMR=59.8792;NS=94;NUMALT=1;ODDS=7.09127;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=340739;QR=81125;RO=2260;RPL=7;RPP=20623.4;RPPR=4893.18;RPR=9517;RUN=1;SAF=9524;SAP=20684.1;SAR=0;SRF=2260;SRP=4910.54;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:10,24:10:360:24:841:-65.7712,0,-22.5093	1/1:176:0,175:0:0:175:6253:-562.504,-52.6803,0	1/1:154:0,154:0:0:154:5494:-493.648,-46.3586,0	1/1:287:0,287:0:0:287:10261:-923.373,-86.3956,0	1/1:81:0,81:0:0:81:2908:-261.91,-24.3834,0	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:175:1,174:1:36:174:6212:-555.52,-49.082,0	1/1:216:0,216:0:0:216:7706:-693.573,-65.0225,0	1/1:76:0,76:0:0:76:2728:-245.746,-22.8783,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:115:0,115:0:0:115:4140:-372.781,-34.6185,0	0/1:72:38,34:38:1360:34:1224:-88.7929,0,-101.026	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	0/1:127:60,67:60:2152:67:2400:-178.025,0,-155.695	0/1:69:37,32:37:1332:32:1152:-83.2191,0,-99.4113	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:106:0,106:0:0:106:3807:-342.826,-31.9092,0	0/1:57:22,35:22:788:35:1251:-95.7356,0,-54.0861	1/1:52:0,52:0:0:52:1857:-167.408,-15.6536,0	1/1:256:0,256:0:0:256:9181:-826.255,-77.0637,0	0/1:174:89,85:89:3200:85:3048:-222.17,0,-235.843	0/1:153:106,47:106:3808:47:1692:-106.509,0,-296.83	1/1:148:0,148:0:0:148:5279:-475.242,-44.5524,0	0/1:126:47,79:47:1692:79:2825:-216.557,0,-114.447	1/1:89:0,89:0:0:89:3173:-284.938,-26.7917,0	1/1:377:1,376:1:36:376:13489:-1210.18,-109.89,0	0/1:198:86,112:86:3088:112:4020:-302.379,0,-218.539	1/1:41:0,41:0:0:41:1472:-132.689,-12.3422,0	1/1:363:1,362:1:36:362:12956:-1162.16,-105.676,0	1/1:231:2,228:2:72:228:8177:-729.054,-62.76,0	0/1:201:75,126:75:2681:126:4486:-343.401,0,-181.026	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	1/1:43:0,43:0:0:43:1548:-139.58,-12.9443,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:202:0,202:0:0:202:7226:-650.331,-60.8081,0	0/1:251:100,151:100:3596:151:5382:-408.895,0,-248.277	1/1:115:0,115:0:0:115:4109:-369.941,-34.6185,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:282:118,164:118:4248:164:5804:-437.568,0,-297.112	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:187:0,187:0:0:187:6712:-604.153,-56.2926,0	1/1:70:0,70:0:0:70:2497:-224.981,-21.0721,0	0/1:63:36,27:36:1288:27:960:-67.7514,0,-97.2581	1/1:159:0,159:0:0:159:5696:-512.667,-47.8638,0	0/1:138:57,81:57:2044:81:2892:-218.759,0,-142.463	0/1:202:70,132:70:2512:132:4720:-364.139,0,-165.524	1/1:142:1,141:1:36:141:5031:-449.334,-39.148,0	0/1:174:46,127:46:1648:127:4560:-358.126,0,-96.1706	1/1:216:0,216:0:0:216:7711:-694.021,-65.0225,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:165:82,83:82:2948:83:2976:-218.402,0,-215.883	1/1:103:0,103:0:0:103:3693:-332.562,-31.0061,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:204:0,204:0:0:204:7301:-656.974,-61.4101,0	1/1:64:0,64:0:0:64:2300:-207.258,-19.2659,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:147:0,147:0:0:147:5200:-468.095,-44.2514,0	0/1:168:82,85:82:2940:85:3028:-222.117,0,-214.202	0/1:15:5,10:5:180:10:337:-26.1393,0,-12.0366	0/1:239:110,129:110:3948:129:4636:-345.455,0,-283.565	0/1:236:99,137:99:3564:137:4875:-367.857,0,-249.921	1/1:116:1,115:1:32:115:4113:-367.154,-31.7202,0	1/1:125:0,125:0:0:125:4492:-404.447,-37.6288,0	0/1:229:93,136:93:3328:136:4866:-369.157,0,-230.801	1/1:147:1,146:1:36:146:5244:-468.486,-40.6531,0	0/1:49:22,27:22:792:27:972:-73.0459,0,-56.8552	0/1:60:31,29:31:1116:29:1039:-75.7623,0,-82.6899	0/1:115:54,61:54:1940:61:2177:-161.575,0,-140.25	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:166:70,96:70:2504:96:3427:-258.67,0,-175.633	0/1:57:20,37:20:712:37:1328:-102.664,0,-47.2479	1/1:365:0,365:0:0:365:13056:-1174.84,-109.876,0	0/1:203:89,114:89:3200:114:4092:-307.355,0,-227.076	1/1:104:0,104:0:0:104:3710:-334.079,-31.3071,0	1/1:154:0,154:0:0:154:5495:-494.551,-46.3586,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:120:0,120:0:0:120:4301:-387.264,-36.1236,0	0/1:102:41,61:41:1472:61:2188:-166.481,0,-102.063	0/1:233:105,128:105:3760:128:4561:-340.516,0,-268.447	0/1:88:36,52:36:1296:52:1860:-141.189,0,-90.4533	1/1:57:0,57:0:0:57:2048:-184.587,-17.1587,0	0/1:93:42,51:42:1508:51:1834:-137.254,0,-107.159	0/1:142:81,61:81:2904:61:2181:-153.806,0,-218.849	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:97:0,97:0:0:97:3483:-313.68,-29.1999,0	1/1:80:0,80:0:0:80:2848:-256.512,-24.0824,0	0/1:73:44,29:44:1584:29:1040:-71.9392,0,-120.876	0/1:193:90,103:90:3236:103:3704:-275.449,0,-233.357	0/1:71:42,29:42:1504:29:1025:-71.1876,0,-114.279	1/1:136:0,136:0:0:136:4869:-438.359,-40.9401,0	1/1:96:0,96:0:0:96:3451:-310.797,-28.8989,0
chr01	164114	.	T	C	33616.9	PASS	AB=0.438782;ABP=163.328;AC=39;AF=0.207447;AN=188;AO=2167;CIGAR=1X;DP=11589;DPB=11589;DPRA=1.11173;EPP=4708.59;EPPR=20451.8;GTI=0;LEN=1;MEANALT=1.02273;MQM=59.9289;MQMR=59.9267;NS=94;NUMALT=1;ODDS=5.508;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76378;QR=336831;RO=9421;RPL=2167;RPP=4708.59;RPPR=20460.5;RPR=0;RUN=1;SAF=2167;SAP=4708.59;SAR=0;SRF=9420;SRP=20451.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:21,10:21:748:10:345:-22.0489,0,-58.3134	0/0:173:173,0:173:6174:0:0:0,-52.0782,-555.759	0/0:148:148,0:148:5280:0:0:0,-44.5524,-475.334	0/0:282:282,0:282:10097:0:0:0,-84.8905,-908.57	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.42	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:170:168,2:168:5989:2:72:0,-44.3384,-532.253	0/0:209:209,0:209:7481:0:0:0,-62.9153,-673.331	0/0:75:75,0:75:2678:0:0:0,-22.5772,-241.256	0/0:57:57,0:57:2027:0:0:0,-17.1587,-182.702	0/0:115:115,0:115:4123:0:0:0,-34.6184,-371.253	0/1:72:33,39:33:1184:39:1342:-99.4022,0,-85.1942	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:121:67,54:67:2392:54:1910:-135.749,0,-179.108	0/1:69:32,37:32:1143:37:1307:-97.1597,0,-82.4076	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.773	0/0:107:107,0:107:3773:0:0:0,-32.2102,-338.996	0/1:56:35,21:35:1256:21:726:-48.8008,0,-96.4876	0/0:52:52,0:52:1832:0:0:0,-15.6536,-165.158	0/0:254:254,0:254:9096:0:0:0,-76.4616,-818.526	0/1:161:83,78:83:2980:78:2699:-194.688,0,-219.966	0/1:148:46,102:46:1644:102:3617:-281.184,0,-103.696	0/0:147:147,0:147:5237:0:0:0,-44.2514,-471.466	0/1:123:79,44:79:2812:44:1565:-104.113,0,-216.291	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.128	0/0:371:371,0:371:13284:0:0:0,-111.682,-1195.34	0/1:190:113,77:113:4064:77:2703:-186.311,0,-308.745	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.464	0/0:363:363,0:363:13000:0:0:0,-109.274,-1169.72	0/0:227:226,1:226:8043:1:36:0,-64.7355,-720.198	0/1:196:123,73:123:4390:73:2578:-173.265,0,-336.271	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.863	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:198:198,0:198:7094:0:0:0,-59.6039,-638.457	0/1:244:147,97:147:5276:97:3444:-236.72,0,-401.423	0/0:112:112,0:112:3986:0:0:0,-33.7154,-358.931	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3237	0/1:275:164,111:164:5871:111:3953:-273.178,0,-445.696	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:187:187,0:187:6703:0:0:0,-56.2926,-603.344	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:62:27,35:27:968:35:1206:-90.1733,0,-68.7735	0/0:157:157,0:157:5644:0:0:0,-47.2617,-508.075	0/1:131:79,52:79:2840:52:1852:-127.513,0,-216.133	0/1:196:129,67:129:4623:67:2378:-155.275,0,-357.217	0/0:145:144,1:144:5159:1:36:0,-40.0511,-460.851	0/1:172:128,44:128:4599:44:1553:-88.2834,0,-362.295	0/0:212:212,0:212:7599:0:0:0,-63.8184,-683.946	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/1:165:83,82:83:2988:82:2895:-211.114,0,-219.481	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.539	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:206:206,0:206:7344:0:0:0,-62.0122,-660.846	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.566	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:147:147,0:147:5247:0:0:0,-44.2514,-472.292	0/1:166:83,83:83:2963:83:2958:-216.481,0,-216.932	0/1:15:10,5:10:341:5:180:-12.0366,0,-26.5023	0/1:231:125,106:125:4496:106:3757:-268.793,0,-335.268	0/1:231:134,97:134:4807:97:3444:-240.635,0,-363.246	0/0:117:116,1:116:4150:1:36:0,-31.6222,-370.084	0/0:125:125,0:125:4462:0:0:0,-37.6287,-401.75	0/1:226:133,93:133:4767:93:3281:-227.476,0,-361.153	0/0:147:146,1:146:5227:1:36:0,-40.6531,-466.958	0/1:49:27,22:27:952:22:764:-54.3263,0,-71.2432	0/1:60:30,30:30:1080:30:1074:-78.911,0,-79.4515	0/1:113:60,53:60:2139:53:1855:-133.202,0,-158.761	0/1:17:10,7:10:351:7:252:-17.9114,0,-26.8092	0/1:162:96,66:96:3423:66:2310:-159.391,0,-259.514	0/1:57:37,20:37:1323:20:701:-46.253,0,-102.213	0/0:364:364,0:364:13023:0:0:0,-109.575,-1171.87	0/1:198:113,85:113:4015:85:3001:-210.632,0,-301.932	0/0:101:101,0:101:3594:0:0:0,-30.404,-323.646	0/0:152:152,0:152:5437:0:0:0,-45.7566,-489.25	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:121:121,0:121:4339:0:0:0,-36.4246,-390.684	0/1:100:61,39:61:2192:39:1383:-94.6569,0,-167.442	0/1:219:123,96:123:4407:96:3387:-239.113,0,-330.876	0/1:87:51,36:51:1816:36:1275:-88.8627,0,-137.532	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.538	0/1:94:50,43:50:1774:43:1477:-104.34,0,-131.69	0/1:138:59,79:59:2096:79:2806:-211.238,0,-147.366	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/0:97:97,0:97:3471:0:0:0,-29.1999,-312.601	0/0:79:79,0:79:2795:0:0:0,-23.7814,-251.747	0/1:71:28,43:28:996:43:1483:-112.385,0,-68.5818	0/1:187:102,85:102:3632:85:2948:-209.26,0,-270.784	0/1:68:27,41:27:964:41:1433:-108.791,0,-66.6068	0/0:133:133,0:133:4753:0:0:0,-40.037,-427.925	0/0:94:94,0:94:3339:0:0:0,-28.2968,-300.728
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chr01	185359	.	T	A	35376.9	PASS	AB=0.500478;ABP=3.01861;AC=37;AF=0.201087;AN=184;AO=2101;CIGAR=1X;DP=9375;DPB=9375;DPRA=1.15766;EPP=4565.27;EPPR=15789.6;GTI=1;LEN=1;MEANALT=1.02381;MQM=59.8401;MQMR=59.7411;NS=92;NUMALT=1;ODDS=0.313826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75186;QR=260380;RO=7270;RPL=2101;RPP=4565.27;RPPR=15789.6;RPR=0;RUN=1;SAF=0;SAP=4565.27;SAR=2101;SRF=0;SRP=15789.6;SRR=7270;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:12,24:12:432:24:852:-66.1615,0,-28.3841	0/0:106:106,0:106:3774:0:0:0,-31.9092,-338.491	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/0:226:226,0:226:8071:0:0:0,-68.0328,-726.295	0/0:77:76,1:76:2732:1:36:0,-19.581,-242.524	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.376	0/0:169:169,0:169:6033:0:0:0,-50.8741,-541.47	0/0:115:115,0:115:4102:0:0:0,-34.6184,-368.979	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.045	0/0:168:168,0:168:6021:0:0:0,-50.573,-541.566	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:78:33,45:33:1188:45:1616:-122.246,0,-83.7455	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.483	0/1:106:50,56:50:1777:56:2008:-149.084,0,-128.302	0/1:89:47,42:47:1692:42:1504:-108.863,0,-125.772	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.75	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.531	0/1:85:44,41:44:1580:41:1476:-107.548,0,-116.901	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3531	0/0:164:163,0:163:5818:0:0:0,-49.0679,-522.439	0/1:186:83,103:83:2965:103:3658:-273.349,0,-210.876	0/1:108:34,74:34:1209:74:2660:-207.133,0,-76.6029	0/0:145:144,0:144:5164:0:0:0,-43.3483,-463.946	0/1:136:71,65:71:2552:65:2321:-168.186,0,-188.446	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.005	0/0:350:350,0:350:12548:0:0:0,-105.36,-1129.06	0/1:179:91,88:91:3248:88:3119:-226.508,0,-238.613	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:305:305,0:305:10892:0:0:0,-91.8141,-979.428	0/0:186:186,0:186:6650:0:0:0,-55.9916,-598.298	0/1:125:74,51:74:2656:51:1832:-127.504,0,-201.282	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0742	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:233:233,0:233:8388:0:0:0,-70.14,-754.218	0/1:230:114,116:114:4077:116:4145:-303.994,0,-297.342	0/0:85:85,0:85:3033:0:0:0,-25.5875,-273.13	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:172:104,68:104:3732:68:2436:-167.673,0,-284.302	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.8052	0/0:141:141,0:141:5032:0:0:0,-42.4452,-453.022	0/0:111:111,0:111:3973:0:0:0,-33.4143,-357.752	0/1:64:38,26:38:1356:26:936:-65.2935,0,-103.075	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.47	0/1:77:43,34:43:1532:34:1220:-86.9242,0,-114.991	0/1:161:66,95:66:2368:95:3416:-259.175,0,-164.883	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.34	0/1:110:51,59:51:1817:59:2108:-156.855,0,-130.696	0/0:175:175,0:175:6280:0:0:0,-52.6802,-564.864	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:84:43,41:43:1544:41:1457:-105.507,0,-113.908	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.846	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4573	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.131	0/0:58:57,1:57:2048:1:36:0,-13.8615,-180.993	.:.:.:.:.:.:.:.	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.8802	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:118:66,52:66:2376:52:1855:-131.708,0,-178.519	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:234:129,105:129:4591:105:3768:-268.863,0,-342.839	0/1:161:64,97:64:2300:97:3488:-265.661,0,-158.795	0/0:81:79,2:79:2836:2:72:0,-17.5467,-248.585	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.251	0/1:194:101,93:101:3597:93:3322:-240.692,0,-265.342	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.509	0/1:22:12,10:12:432:10:356:-25.7399,0,-32.5985	0/1:79:51,28:51:1832:28:1004:-66.8945,0,-141.366	0/1:77:35,42:35:1260:42:1500:-112.114,0,-90.5262	0/1:11:2,9:2:72:9:309:-24.8294,0,-3.52539	0/1:135:65,70:65:2317:70:2504:-184.958,0,-168.143	0/1:49:22,27:22:788:27:972:-73.0465,0,-56.4943	0/0:161:161,0:161:5761:0:0:0,-48.4658,-518.556	0/1:174:71,103:71:2548:103:3700:-280.822,0,-176.82	0/0:114:113,1:113:4045:1:36:0,-30.7191,-360.534	0/0:110:107,3:107:3844:3:100:0,-23.7829,-335.716	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/0:113:113,0:113:4045:0:0:0,-34.0164,-364.235	0/1:105:61,42:61:2162:42:1500:-103.915,0,-163.43	0/1:173:98,75:98:3528:75:2696:-190.806,0,-265.649	0/1:118:61,57:61:2173:57:2039:-148.26,0,-160.302	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.682	0/1:128:70,58:70:2520:58:2071:-148.128,0,-188.518	0/1:192:101,91:101:3621:91:3255:-235.344,0,-268.267	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.643	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.071	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.723	0/1:41:24,17:24:860:17:612:-43.0712,0,-65.3796	0/1:73:34,39:34:1220:39:1391:-103.512,0,-88.0867	0/1:68:21,47:21:756:47:1692:-132.097,0,-47.8972	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.809	0/0:127:127,0:127:4572:0:0:0,-38.2308,-411.642
chr01	219382	.	C	A	170878	PASS	AB=0.516;ABP=13.0164;AC=147;AF=0.781915;AN=188;AO=7947;CIGAR=1X;DP=10146;DPB=10146;DPRA=0;EPP=17129.7;EPPR=4756.36;GTI=0;LEN=1;MEANALT=1.09574;MQM=59.6341;MQMR=59.5829;NS=94;NUMALT=1;ODDS=2.01312;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284575;QR=78334;RO=2189;RPL=7932;RPP=17129.7;RPPR=4756.36;RPR=15;RUN=1;SAF=0;SAP=17259.7;SAR=7947;SRF=0;SRP=4756.36;SRR=2189;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:22,47:22:780:47:1676:-130.325,0,-49.7356	1/1:60:0,60:0:0:60:2148:-193.521,-18.0618,0	1/1:87:0,87:0:0:87:3121:-281.105,-26.1896,0	1/1:220:0,220:0:0:220:7859:-707.279,-66.2266,0	1/1:47:0,47:0:0:47:1688:-152.202,-14.1484,0	1/1:38:0,38:0:0:38:1360:-122.494,-11.4391,0	1/1:106:0,106:0:0:106:3792:-341.479,-31.9092,0	1/1:172:0,170:0:0:170:6081:-546.972,-51.1751,0	1/1:102:0,102:0:0:102:3660:-329.503,-30.7051,0	1/1:98:0,98:0:0:98:3520:-317.006,-29.5009,0	1/1:84:0,84:0:0:84:3003:-270.465,-25.2865,0	0/1:145:59,86:59:2124:86:3092:-234.825,0,-147.754	0/1:99:53,46:53:1900:46:1652:-118.96,0,-141.469	0/1:96:45,51:45:1620:51:1828:-135.897,0,-117.177	0/1:71:33,38:33:1188:38:1368:-102.048,0,-85.8508	1/1:76:0,76:0:0:76:2708:-243.862,-22.8783,0	1/1:43:0,42:0:0:42:1504:-135.275,-12.6433,0	0/1:47:21,26:21:756:26:920:-68.9662,0,-54.1091	1/1:54:0,54:0:0:54:1944:-175.228,-16.2556,0	1/1:177:1,176:1:36:176:6324:-565.429,-49.684,0	0/1:251:146,105:146:5228:105:3745:-261.669,0,-395.037	0/1:119:82,37:82:2924:37:1327:-83.9083,0,-227.566	1/1:133:1,132:1:36:132:4714:-420.713,-36.4387,0	0/1:72:29,43:29:1044:43:1512:-114.686,0,-72.6006	1/1:105:0,104:0:0:104:3719:-334.524,-31.3071,0	1/1:364:0,364:0:0:364:13046:-1173.7,-109.575,0	0/1:268:112,156:112:4001:156:5581:-421.31,0,-279.523	1/1:31:0,31:0:0:31:1116:-100.747,-9.33193,0	1/1:256:0,256:0:0:256:9183:-826.414,-77.0637,0	1/1:186:2,182:2:72:182:6523:-580.286,-48.8752,0	0/1:159:55,103:55:1964:103:3684:-283.919,0,-129.215	1/1:5:0,5:0:0:5:180:-16.5511,-1.50515,0	1/1:36:0,36:0:0:36:1292:-116.579,-10.8371,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:18:4,14:4:144:14:495:-39.4634,0,-7.89508	1/1:52:0,52:0:0:52:1855:-167.185,-15.6536,0	1/1:212:0,212:0:0:212:7615:-685.378,-63.8184,0	0/1:141:53,88:53:1881:88:3150:-241.255,0,-127.042	1/1:89:0,89:0:0:89:3190:-287.249,-26.7917,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:115:51,64:51:1820:64:2283:-171.095,0,-129.443	1/1:42:0,42:0:0:42:1499:-135.204,-12.6433,0	1/1:126:0,125:0:0:125:4464:-401.53,-37.6288,0	1/1:78:0,78:0:0:78:2800:-252.23,-23.4803,0	0/1:46:27,19:27:972:19:675:-47.2296,0,-73.9505	1/1:139:0,139:0:0:139:4961:-446.632,-41.8432,0	0/1:149:87,62:87:3084:62:2228:-155.914,0,-232.915	0/1:149:69,80:69:2461:80:2876:-214.218,0,-176.252	1/1:93:0,93:0:0:93:3339:-300.655,-27.9958,0	0/1:120:56,64:56:1982:64:2292:-170.418,0,-142.52	1/1:100:0,100:0:0:100:3583:-322.668,-30.103,0	1/1:19:0,19:0:0:19:669:-60.5339,-5.71957,0	0/1:138:72,65:72:2588:65:2332:-168.527,0,-191.552	1/1:106:0,106:0:0:106:3800:-342.188,-31.9092,0	1/1:16:0,16:0:0:16:561:-50.8089,-4.81648,0	1/1:148:1,147:1:36:147:5267:-470.414,-40.9542,0	1/1:76:0,76:0:0:76:2694:-242.634,-22.8783,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:124:0,124:0:0:124:4439:-399.42,-37.3277,0	0/1:157:85,72:85:3052:72:2569:-184.166,0,-227.616	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:171:71,100:71:2536:100:3561:-269.194,0,-176.793	0/1:172:65,107:65:2332:107:3844:-294.271,0,-157.985	1/1:50:1,49:1:36:49:1760:-155.067,-11.4532,0	1/1:91:1,90:1:36:90:3232:-287.49,-23.7955,0	0/1:151:78,73:78:2793:73:2622:-190.687,0,-206.148	1/1:217:0,217:0:0:217:7791:-701.192,-65.3235,0	0/1:66:28,38:28:1004:38:1364:-103.184,0,-70.8033	0/1:100:48,52:48:1709:52:1860:-137.568,0,-123.944	0/1:52:27,25:27:968:25:896:-65.3026,0,-71.7276	0/1:39:12,27:12:432:27:964:-75.3362,0,-27.4787	0/1:204:101,103:101:3620:103:3704:-271.806,0,-264.542	0/1:75:36,39:36:1292:39:1400:-103.714,0,-94.0065	1/1:259:3,256:3:108:256:9165:-814.636,-67.8916,0	0/1:82:48,34:48:1716:34:1220:-85.3342,0,-130.039	1/1:262:0,262:0:0:262:9367:-842.886,-78.8699,0	1/1:57:0,57:0:0:57:2024:-182.414,-17.1587,0	1/1:23:0,23:0:0:23:817:-73.8433,-6.92369,0	1/1:65:0,65:0:0:65:2314:-208.015,-19.567,0	0/1:104:54,50:54:1927:50:1792:-130.252,0,-142.209	0/1:181:88,93:88:3152:93:3332:-245.597,0,-229.374	0/1:57:31,26:31:1112:26:932:-67.0331,0,-83.2141	1/1:114:0,114:0:0:114:4076:-366.992,-34.3174,0	0/1:57:33,24:33:1184:24:860:-60.5631,0,-89.7003	0/1:156:75,81:75:2696:81:2916:-215.702,0,-195.551	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:85:1,84:1:36:84:3008:-267.301,-21.9893,0	1/1:216:1,215:1:36:215:7724:-691.489,-61.4333,0	0/1:113:56,57:56:2012:57:2040:-149.826,0,-147.328	0/1:183:87,96:87:3112:96:3428:-253.602,0,-225.194	0/1:94:68,25:68:2432:25:900:-52.9587,0,-190.763	1/1:144:0,144:0:0:144:5167:-465.155,-43.3483,0	1/1:126:2,124:2:72:124:4445:-393.326,-31.0955,0
chr01	219385	.	C	T	36586	PASS	AB=0.489262;ABP=7.48732;AC=41;AF=0.218085;AN=188;AO=2205;CIGAR=1X;DP=10056;DPB=10056;DPRA=1.25753;EPP=4791.11;EPPR=17025.2;GTI=0;LEN=1;MEANALT=1.07547;MQM=59.5442;MQMR=59.6634;NS=94;NUMALT=1;ODDS=2.97316;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78803;QR=280266;RO=7847;RPL=2205;RPP=4791.11;RPPR=17025.2;RPR=0;RUN=1;SAF=0;SAP=4791.11;SAR=2205;SRF=0;SRP=17042.6;SRR=7847;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:46,24:46:1652:24:851:-55.592,0,-127.844	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.07	0/0:84:84,0:84:2979:0:0:0,-25.2865,-268.339	0/0:217:217,0:217:7759:0:0:0,-65.3235,-698.276	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.005	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.854	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/0:170:170,0:170:6053:0:0:0,-51.1751,-544.718	0/0:102:102,0:102:3635:0:0:0,-30.7051,-327.272	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.287	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.486	0/1:149:86,62:86:3072:62:2224:-155.488,0,-231.778	0/1:98:44,54:44:1571:54:1917:-143.3,0,-111.979	0/1:97:51,46:51:1814:46:1656:-120.115,0,-134.335	0/1:71:37,34:37:1332:34:1220:-88.729,0,-98.8093	0/0:72:72,0:72:2562:0:0:0,-21.6742,-230.815	0/0:43:43,0:43:1544:0:0:0,-12.9443,-138.916	0/1:46:25,21:25:900:21:752:-54.0491,0,-67.4655	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.027	0/0:176:174,2:174:6236:2:72:0,-46.147,-554.459	0/1:246:100,146:100:3584:146:5189:-393.036,0,-248.697	0/1:114:37,77:37:1324:77:2760:-214.317,0,-85.1429	0/0:129:128,1:128:4550:1:36:0,-35.2346,-406.051	0/1:71:42,29:42:1495:29:1044:-72.8971,0,-113.456	0/0:107:107,0:107:3810:0:0:0,-32.2102,-343.044	0/0:358:358,0:358:12807:0:0:0,-107.769,-1152.16	0/1:267:154,113:154:5503:113:4003:-280.067,0,-414.093	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.265	0/0:253:253,0:253:9047:0:0:0,-76.1606,-814.196	0/0:181:179,2:179:6388:2:72:0,-47.6497,-568.108	0/1:159:101,58:101:3620:58:2060:-137.798,0,-278.069	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1841	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.859	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2713	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.303	0/0:209:209,0:209:7479:0:0:0,-62.9153,-673.148	0/1:139:86,53:86:3072:53:1895:-128.958,0,-234.846	0/0:90:90,0:90:3202:0:0:0,-27.0927,-288.347	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:115:63,52:63:2235:52:1853:-132.409,0,-166.777	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.389	0/0:123:123,0:123:4395:0:0:0,-37.0267,-395.682	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.151	0/1:45:19,26:19:672:26:936:-71.0131,0,-47.2605	0/0:135:135,0:135:4820:0:0:0,-40.639,-433.948	0/1:146:61,85:61:2188:85:3039:-229.781,0,-153.227	0/1:150:79,71:79:2836:71:2539:-183.433,0,-210.319	0/0:92:91,1:91:3247:1:36:0,-24.0991,-288.83	0/1:121:64,57:64:2276:57:2048:-148.146,0,-168.678	0/0:101:101,0:101:3615:0:0:0,-30.404,-325.546	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2882	0/1:138:64,74:64:2291:74:2654:-197.542,0,-164.9	0/0:102:102,0:102:3626:0:0:0,-30.7051,-326.537	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1668	0/0:151:150,1:150:5344:1:36:0,-41.8573,-477.343	0/0:77:77,0:77:2739:0:0:0,-23.1793,-246.39	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:122:122,0:122:4380:0:0:0,-36.7257,-393.566	0/1:158:70,88:70:2508:88:3156:-236.663,0,-178.328	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/1:170:99,71:99:3532:71:2521:-175.85,0,-266.838	0/1:169:104,65:104:3732:65:2320:-157.809,0,-285.106	0/0:49:48,1:48:1724:1:36:0,-11.1522,-151.831	0/0:91:90,1:90:3189:1:36:0,-23.7955,-283.628	0/1:152:72,79:72:2568:79:2821:-208.371,0,-185.57	0/0:212:211,1:211:7543:1:36:0,-60.2227,-675.29	0/1:63:36,27:36:1292:27:968:-68.4679,0,-97.6097	0/1:100:51,49:51:1824:49:1741:-126.837,0,-134.33	0/1:52:25,27:25:900:27:972:-72.0882,0,-65.6656	0/1:39:27,12:27:968:12:432:-27.4787,0,-75.697	0/1:202:101,101:101:3588:101:3617:-264.867,0,-262.289	0/1:74:38,36:38:1356:36:1296:-94.6677,0,-100.056	0/0:255:252,3:252:8965:3:108:0,-66.6875,-796.662	0/1:82:34,48:34:1220:48:1728:-131.119,0,-85.3314	0/0:262:262,0:262:9362:0:0:0,-78.8699,-842.469	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.328	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6385	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.242	0/1:104:51,53:51:1816:53:1900:-139.781,0,-132.411	0/1:178:93,85:93:3327:85:3040:-220.153,0,-246.048	0/1:57:26,31:26:928:31:1101:-82.2149,0,-66.6725	0/0:117:117,0:117:4183:0:0:0,-35.2205,-376.62	0/1:57:24,33:24:860:33:1188:-89.9766,0,-60.5631	0/1:153:78,75:78:2766:75:2676:-195.009,0,-203.112	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:85:84,1:84:2991:1:36:0,-21.9893,-265.795	0/0:210:209,1:209:7470:1:36:0,-59.6271,-668.696	0/1:114:55,58:55:1972:58:2074:-152.624,0,-143.455	0/1:180:92,88:92:3279:88:3132:-227.899,0,-241.094	0/1:92:25,67:25:884:67:2400:-188.544,0,-52.1766	0/0:145:145,0:145:5180:0:0:0,-43.6493,-465.552	0/0:125:121,3:121:4315:3:108:0,-27.617,-378.402
chr01	227680	.	T	C	27975.8	PASS	AB=0.481385;ABP=13.439;AC=42;AF=0.223404;AN=188;AO=1678;CIGAR=1X;DP=7690;DPB=7690;DPRA=1.25533;EPP=3577.59;EPPR=12779.2;GTI=2;LEN=1;MEANALT=1.08889;MQM=59.919;MQMR=59.6289;NS=94;NUMALT=1;ODDS=3.59884;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59736;QR=214813;RO=6007;RPL=8;RPP=3577.59;RPPR=12779.2;RPR=1670;RUN=1;SAF=1678;SAP=3646.74;SAR=0;SRF=6007;SRP=13047;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:28,22:28:992:22:775:-55.0197,0,-74.4565	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.786	0/0:162:162,0:162:5764:0:0:0,-48.7669,-518.707	0/0:209:209,0:209:7496:0:0:0,-62.9153,-673.763	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.814	0/0:177:176,1:176:6293:1:36:0,-49.684,-562.858	0/0:94:94,0:94:3360:0:0:0,-28.2968,-302.576	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.133	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.298	0/1:94:43,51:43:1544:51:1801:-133.967,0,-110.868	0/1:93:45,48:45:1601:48:1716:-126.73,0,-116.381	0/1:65:25,40:25:884:40:1431:-109.519,0,-60.3032	0/1:61:26,35:26:936:35:1251:-94.5314,0,-66.1896	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.262	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.866	0/1:51:25,26:25:896:26:936:-69.206,0,-65.6023	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:171:170,1:170:6092:1:36:0,-47.8779,-544.708	0/1:94:50,44:50:1791:44:1567:-113.023,0,-133.112	0/1:60:24,36:24:860:36:1288:-98.1618,0,-59.2851	0/0:137:137,0:137:4884:0:0:0,-41.2411,-439.666	0/1:53:33,20:33:1184:20:708:-48.091,0,-90.9137	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.839	0/0:215:215,0:215:7683:0:0:0,-64.7214,-691.429	0/1:247:126,120:126:4475:120:4277:-310.845,0,-328.611	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9013	0/0:278:278,0:278:9928:0:0:0,-83.6863,-893.447	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.04	0/1:126:66,60:66:2352:60:2152:-156.017,0,-174.003	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:141:141,0:141:5052:0:0:0,-42.4452,-454.73	0/1:60:33,27:33:1169:27:968:-69.3756,0,-87.3963	0/0:40:39,0:39:1400:0:0:0,-11.7402,-125.866	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2969	0/1:96:35,61:35:1256:61:2183:-167.836,0,-84.4206	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8821	0/0:167:165,2:165:5906:2:72:0,-43.4525,-523.968	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.081	0/1:46:23,23:23:820:23:812:-59.5535,0,-60.2751	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.938	0/1:102:57,45:57:2044:45:1589:-112.595,0,-153.448	0/1:151:81,70:81:2889:70:2490:-178.867,0,-214.741	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.572	0/1:117:66,51:66:2372:51:1807:-127.69,0,-178.505	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.032	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:94:59,35:59:2124:35:1256:-85.0485,0,-163.13	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.208	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.215	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.03	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:409:0:0:0,-3.61236,-37.1344	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.593	0/1:79:35,44:35:1256:44:1564:-117.27,0,-89.5616	0/1:5:2,3:2:72:3:104:-8.18568,0,-5.33157	0/1:131:64,67:64:2296:67:2396:-176.461,0,-167.466	0/1:169:92,76:92:3288:76:2719:-194.02,0,-244.813	0/1:60:54,6:54:1923:6:212:-1.363,0,-155.26	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.892	0/1:164:97,67:97:3464:67:2382:-165.269,0,-262.597	0/0:107:107,0:107:3833:0:0:0,-32.2102,-345.108	0/1:51:26,25:26:932:25:896:-65.6078,0,-67.4555	0/1:42:27,15:27:968:15:540:-36.2933,0,-74.7932	0/1:35:13,22:13:464:22:788:-60.7087,0,-31.5615	0/1:27:12,15:12:428:15:532:-40.0853,0,-30.7286	0/1:82:40,41:40:1413:41:1459:-106.951,0,-102.81	0/1:56:29,27:29:1040:27:948:-68.7747,0,-77.0533	0/0:207:207,0:207:7389:0:0:0,-62.3132,-664.855	0/1:137:69,67:69:2472:67:2379:-173.068,0,-181.422	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.507	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.316	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:134:132,2:132:4728:2:72:0,-33.5099,-418.563	0/1:146:74,72:74:2656:72:2584:-188.858,0,-195.324	0/1:218:140,78:140:5027:78:2767:-183.648,0,-386.917	0/1:55:17,38:17:612:38:1330:-103.44,0,-38.8568	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.525	0/1:43:19,24:19:684:24:851:-63.9652,0,-48.946	0/1:113:55,58:55:1976:58:2063:-151.921,0,-144.089	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0478	0/0:56:56,0:56:1997:0:0:0,-16.8577,-179.998	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.383	0/1:38:19,19:19:684:19:672:-49.3677,0,-50.398	0/1:75:35,40:35:1256:40:1407:-104.119,0,-90.5654	0/1:74:28,46:28:1000:46:1636:-125.253,0,-68.0392	0/0:95:95,0:95:3368:0:0:0,-28.5978,-303.193	0/0:91:91,0:91:3246:0:0:0,-27.3937,-292.351
chr01	227710	.	A	G	77838.8	PASS	AB=0.492827;ABP=6.1878;AC=40;AF=0.212766;AN=188;AO=3521;CIGAR=1X;DP=16226;DPB=16226;DPRA=1.24202;EPP=7648.76;EPPR=27580.7;GTI=0;LEN=1;MEANALT=1.10417;MQM=59.9804;MQMR=59.8122;NS=94;NUMALT=1;ODDS=5.66971;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123336;QR=451906;RO=12700;RPL=1620;RPP=51.7072;RPPR=71.7376;RPR=1901;RUN=1;SAF=1620;SAP=51.7072;SAR=1901;SRF=6033;SRP=71.7376;SRR=6667;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:97:47,50:47:1647:50:1747:-128.311,0,-119.28	0/0:140:140,0:140:4987:0:0:0,-42.1442,-448.976	0/0:312:312,0:312:11072:0:0:0,-93.9214,-996.122	0/0:504:504,0:504:17932:0:0:0,-151.719,-1613.01	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:185:185,0:185:6564:0:0:0,-55.6905,-590.835	0/0:367:366,1:366:13018:1:36:0,-106.88,-1167.8	0/0:225:225,0:225:7965:0:0:0,-67.7317,-716.8	0/0:173:173,0:173:6167:0:0:0,-52.0782,-555.074	0/0:83:83,0:83:2940:0:0:0,-24.9855,-264.827	0/1:156:76,80:76:2681:80:2794:-204.668,0,-194.487	0/1:158:77,81:77:2756:81:2852:-209.356,0,-200.716	0/1:80:32,48:32:1140:48:1682:-127.582,0,-78.8186	0/1:124:65,59:65:2332:59:2059:-148.252,0,-172.805	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.291	0/0:65:65,0:65:2310:0:0:0,-19.5669,-208.158	0/1:83:38,45:38:1356:45:1583:-117.774,0,-97.3541	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/0:413:412,1:412:14681:1:36:0,-120.727,-1317.36	0/1:264:118,145:118:4167:145:5090:-378.818,0,-295.72	0/1:167:73,94:73:2594:94:3253:-242.721,0,-183.242	0/0:301:301,0:301:10717:0:0:0,-90.61,-964.419	0/1:81:56,25:56:1983:25:880:-55.1343,0,-154.352	0/0:135:135,0:135:4819:0:0:0,-40.639,-433.85	0/0:519:519,0:519:18460:0:0:0,-156.235,-1660.9	0/1:421:206,215:206:7345:215:7546:-552.456,0,-534.32	0/0:41:41,0:41:1451:0:0:0,-12.3422,-130.884	0/0:654:654,0:654:23359:0:0:0,-196.874,-2101.67	0/0:208:208,0:208:7430:0:0:0,-62.6142,-668.629	0/1:219:118,101:118:4181:101:3499:-249.195,0,-310.542	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:19:6,13:6:216:13:435:-33.7495,0,-14.0709	0/1:13:3,10:3:108:10:348:-27.7417,0,-6.16178	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5607	0/0:282:281,1:281:9990:1:36:0,-81.2922,-895.403	0/1:180:85,95:85:3022:95:3299:-242.943,0,-217.973	0/0:60:60,0:60:2114:0:0:0,-18.0618,-190.454	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5354	0/1:244:134,110:134:4773:110:3810:-269.651,0,-356.269	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.454	0/0:360:360,0:360:12843:0:0:0,-108.371,-1154.82	0/0:82:82,0:82:2916:0:0:0,-24.6845,-262.666	0/1:92:57,35:57:2022:35:1195:-80.1536,0,-154.557	0/0:178:178,0:178:6331:0:0:0,-53.5833,-569.87	0/1:249:140,108:140:4973:108:3765:-264.182,0,-372.727	0/1:376:190,185:190:6759:185:6511:-472.966,0,-495.222	0/0:209:209,0:209:7478:0:0:0,-62.9153,-673.037	0/1:210:122,88:122:4343:88:3078:-214.033,0,-327.819	0/0:142:142,0:142:5058:0:0:0,-42.7463,-455.047	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/1:177:91,86:91:3212:86:3031:-219.738,0,-236.019	0/0:153:152,1:152:5422:1:36:0,-42.4593,-484.14	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:301:297,4:297:10534:4:131:0,-78.4966,-935.851	0/0:126:125,1:125:4471:1:36:0,-34.3315,-398.948	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2415	0/0:174:174,0:174:6129:0:0:0,-52.3792,-551.566	0/1:133:50,83:50:1787:83:2919:-222.908,0,-121.072	0/1:15:9,6:9:315:6:196:-13.4435,0,-24.1718	0/1:345:166,178:166:5899:178:6274:-460.989,0,-427.223	0/1:339:188,151:188:6668:151:5314:-376.35,0,-497.501	0/0:138:131,7:131:4684:7:248:0,-18.8779,-399.031	0/0:157:157,0:157:5564:0:0:0,-47.2617,-500.879	0/1:391:222,168:222:7878:168:5929:-415.963,0,-590.099	0/0:230:230,0:230:8201:0:0:0,-69.2369,-738.091	0/1:76:39,37:39:1383:37:1307:-95.0525,0,-100.506	0/1:126:70,56:70:2494:56:1956:-138.381,0,-186.781	0/1:63:29,34:29:1025:34:1203:-89.6101,0,-73.5958	0/1:42:19,23:19:676:23:806:-60.215,0,-48.5224	0/1:200:104,96:104:3680:96:3363:-242.683,0,-271.142	0/1:129:63,66:63:2256:66:2303:-168.695,0,-164.467	0/0:395:395,0:395:14082:0:0:0,-118.907,-1266.92	0/1:320:164,156:164:5865:156:5485:-397.451,0,-431.616	0/0:173:173,0:173:6164:0:0:0,-52.0782,-554.81	0/0:212:212,0:212:7595:0:0:0,-63.8184,-683.584	0/0:22:22,0:22:777:0:0:0,-6.62266,-70.2504	0/0:269:268,1:268:9542:1:36:0,-77.3788,-854.855	0/1:332:169,163:169:6024:163:5730:-415.881,0,-442.313	0/1:462:255,207:255:9061:207:7275:-515.737,0,-676.364	0/1:89:38,51:38:1347:51:1783:-133.957,0,-94.7378	0/0:118:118,0:118:4201:0:0:0,-35.5215,-378.263	0/1:85:40,45:40:1428:45:1573:-116.271,0,-103.23	0/1:210:96,114:96:3381:114:3984:-295.536,0,-241.275	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.718	0/0:105:105,0:105:3700:0:0:0,-31.6081,-333.199	0/0:128:128,0:128:4567:0:0:0,-38.5318,-411.193	0/1:65:32,33:32:1140:33:1136:-82.9742,0,-83.3155	0/1:131:67,64:67:2383:64:2250:-163.329,0,-175.09	0/1:147:47,100:47:1663:100:3498:-270.781,0,-105.619	0/0:210:210,0:210:7487:0:0:0,-63.2163,-673.669	0/0:163:163,0:163:5813:0:0:0,-49.0679,-523.277
chr01	266110	.	T	C	156583	PASS	AB=0.537101;ABP=55.0543;AC=149;AF=0.792553;AN=188;AO=7384;CIGAR=1X;DP=9410;DPB=9410;DPRA=0;EPP=16037.2;EPPR=4385.05;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.8063;MQMR=59.9688;NS=94;NUMALT=1;ODDS=3.52315;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263446;QR=70013;RO=2022;RPL=7384;RPP=16037.2;RPPR=4385.05;RPR=0;RUN=1;SAF=0;SAP=16037.2;SAR=7384;SRF=0;SRP=4393.73;SRR=2022;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:7,12:7:237:12:432:-33.5012,0,-15.9395	1/1:166:0,166:0:0:166:5938:-534.113,-49.971,0	1/1:109:0,109:0:0:109:3870:-348.478,-32.8123,0	1/1:238:0,238:0:0:238:8501:-764.818,-71.6451,0	1/1:34:0,34:0:0:34:1209:-109.114,-10.235,0	1/1:58:0,58:0:0:58:2057:-185.4,-17.4597,0	1/1:140:1,139:1:21:139:4969:-445.181,-40.0443,0	1/1:168:0,168:0:0:168:6005:-540.397,-50.573,0	1/1:45:0,45:0:0:45:1608:-145.007,-13.5464,0	1/1:97:0,97:0:0:97:3464:-311.963,-29.1999,0	1/1:134:0,134:0:0:134:4746:-427.278,-40.338,0	0/1:100:40,60:40:1394:60:2148:-163.449,0,-95.65	0/1:109:46,63:46:1644:63:2227:-167.763,0,-115.436	0/1:143:70,73:70:2476:73:2604:-191.559,0,-180.048	0/1:77:32,45:32:1098:45:1601:-121.199,0,-75.9426	1/1:84:0,84:0:0:84:3004:-270.59,-25.2865,0	1/1:144:0,144:0:0:144:5157:-464.228,-43.3483,0	0/1:68:41,27:41:1444:27:972:-67.3263,0,-109.785	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:139:0,139:0:0:139:4966:-447.059,-41.8432,0	0/1:99:37,62:37:1288:62:2190:-167.56,0,-86.4188	0/1:28:10,18:10:322:18:633:-48.8658,0,-20.8624	1/1:45:2,43:2:68:43:1499:-128.739,-7.08864,0	0/1:81:49,32:49:1682:32:1129:-77.5329,0,-127.279	1/1:41:1,40:1:36:40:1432:-125.579,-8.74396,0	1/1:328:0,328:0:0:328:11719:-1054.17,-98.7378,0	0/1:231:115,115:115:3988:115:4120:-301.308,0,-289.518	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:227:0,227:0:0:227:8110:-729.845,-68.3338,0	1/1:192:1,191:1:36:191:6826:-610.681,-54.1995,0	0/1:128:50,78:50:1726:78:2774:-211.365,0,-117.089	1/1:9:0,9:0:0:9:316:-28.7766,-2.70927,0	1/1:17:0,17:0:0:17:612:-55.3996,-5.11751,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:250:0,250:0:0:250:8992:-808.884,-75.2575,0	0/1:132:78,54:78:2665:54:1928:-133.909,0,-200.357	1/1:114:0,114:0:0:114:4088:-368.06,-34.3174,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:125:65,59:65:2235:59:2120:-153.122,0,-163.724	1/1:43:0,43:0:0:43:1544:-138.633,-12.9443,0	1/1:103:0,103:0:0:103:3658:-329.316,-31.0061,0	1/1:105:0,105:0:0:105:3760:-338.504,-31.6082,0	0/1:75:37,38:37:1296:38:1349:-99.1309,0,-94.3638	1/1:103:0,103:0:0:103:3673:-330.771,-31.0061,0	0/1:79:39,40:39:1327:40:1414:-103.773,0,-95.9402	0/1:106:46,60:46:1601:60:2126:-159.694,0,-112.468	1/1:103:0,103:0:0:103:3642:-327.951,-31.0061,0	0/1:174:74,100:74:2478:100:3588:-270.747,0,-170.892	1/1:92:0,92:0:0:92:3278:-295.08,-27.6948,0	1/1:21:0,21:0:0:21:756:-68.3663,-6.32163,0	0/1:107:44,63:44:1494:63:2237:-169.382,0,-102.537	1/1:49:0,49:0:0:49:1741:-156.972,-14.7505,0	1/1:33:0,33:0:0:33:1158:-104.523,-9.93399,0	1/1:118:0,118:0:0:118:4187:-376.878,-35.5215,0	1/1:53:0,53:0:0:53:1874:-168.921,-15.9546,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:89:0,89:0:0:89:3154:-284.084,-26.7917,0	0/1:140:57,83:57:1971:83:2964:-224.849,0,-135.516	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	0/1:233:99,134:99:3375:134:4812:-362.8,0,-233.835	0/1:130:50,80:50:1730:80:2842:-216.882,0,-116.847	1/1:108:1,107:1:36:107:3806:-339.07,-28.913,0	1/1:68:0,68:0:0:68:2428:-218.669,-20.47,0	0/1:220:92,128:92:3206:128:4554:-343.754,0,-222.539	1/1:74:0,74:0:0:74:2644:-238.207,-22.2762,0	0/1:88:48,40:48:1662:40:1417:-101.312,0,-123.372	0/1:41:14,27:14:461:27:968:-75.0951,0,-29.4633	0/1:116:53,62:53:1857:62:2224:-165.446,0,-132.43	0/1:40:23,17:23:781:17:612:-43.3722,0,-58.5615	0/1:79:21,58:21:723:58:2057:-161.484,0,-41.6071	0/1:95:50,45:50:1733:45:1601:-115.78,0,-127.655	1/1:99:2,97:2:72:97:3422:-301.058,-22.9652,0	0/1:151:66,84:66:2248:84:3016:-226.111,0,-157.065	1/1:101:1,100:1:36:100:3596:-320.037,-26.8058,0	1/1:136:0,136:0:0:136:4821:-434.045,-40.9401,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:125:1,124:1:36:124:4433:-395.541,-34.0305,0	0/1:94:51,43:51:1769:43:1540:-110.337,0,-131.193	0/1:211:111,100:111:3812:100:3566:-257.614,0,-279.769	0/1:137:56,81:56:1965:81:2892:-219.207,0,-135.883	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	0/1:133:66,67:66:2324:67:2378:-174.215,0,-169.385	0/1:207:94,113:94:3333:113:4048:-301.948,0,-237.875	1/1:64:1,63:1:36:63:2264:-200.424,-15.6676,0	1/1:116:0,116:0:0:116:4156:-374.093,-34.9195,0	1/1:93:0,93:0:0:93:3291:-296.392,-27.9958,0	0/1:76:28,48:28:988:48:1707:-131.035,0,-66.3523	0/1:158:75,83:75:2603:83:2969:-219.878,0,-186.954	0/1:106:69,37:69:2420:37:1298:-85.208,0,-185.986	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:120:0,120:0:0:120:4275:-384.913,-36.1236,0
chr01	266150	.	A	T	33166.6	PASS	AB=0.513228;ABP=8.75494;AC=40;AF=0.212766;AN=188;AO=1950;CIGAR=1X;DP=8392;DPB=8392;DPRA=1.12773;EPP=4056.94;EPPR=68.5966;GTI=1;LEN=1;MEANALT=1.02273;MQM=48.8313;MQMR=58.3469;NS=94;NUMALT=1;ODDS=0.931254;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69456;QR=229249;RO=6439;RPL=1929;RPP=4056.94;RPPR=68.0031;RPR=21;RUN=1;SAF=1950;SAP=4237.38;SAR=0;SRF=6438;SRP=13976.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:21,23:21:729:23:816:-59.9197,0,-52.6008	0/0:177:176,0:176:6241:0:0:0,-52.9813,-559.915	0/0:71:71,0:71:2544:0:0:0,-21.3731,-228.715	0/0:228:228,0:228:8102:0:0:0,-68.6348,-727.091	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.227	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.596	0/0:160:159,0:159:5668:0:0:0,-47.8638,-509.793	0/0:147:144,3:144:5086:3:108:0,-34.2189,-447.32	0/0:100:100,0:100:3564:0:0:0,-30.103,-320.366	0/0:134:134,0:134:4737:0:0:0,-40.338,-426.405	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.161	0/1:34:22,12:22:780:12:432:-28.222,0,-60.1866	0/1:57:23,34:23:824:34:1198:-89.7843,0,-57.2906	0/1:39:18,21:18:644:21:737:-54.5776,0,-46.5404	0/1:38:20,18:20:716:18:644:-46.4716,0,-53.261	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.272	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.591	0/1:38:21,17:21:748:17:604:-43.0473,0,-56.0458	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.795	0/0:257:257,0:257:9156:0:0:0,-77.3647,-823.704	0/1:130:67,63:67:2385:63:2256:-162.44,0,-175.566	0/1:120:20,100:20:708:100:3579:-283.008,0,-27.922	0/0:74:74,0:74:2614:0:0:0,-22.2762,-235.396	0/1:160:75,85:75:2618:85:3009:-221.175,0,-187.487	0/0:93:93,0:93:3320:0:0:0,-27.9958,-298.303	0/0:262:262,0:262:9291:0:0:0,-78.8699,-835.223	0/1:166:83,83:83:2957:83:2942:-213.465,0,-216.326	0/0:30:30,0:30:1064:0:0:0,-9.0309,-95.9223	0/0:286:286,0:286:10162:0:0:0,-86.0946,-914.389	0/0:120:120,0:120:4280:0:0:0,-36.1236,-385.211	0/1:120:57,63:57:2036:63:2248:-164.973,0,-147.36	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.263	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9771	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/1:10:7,3:7:248:3:108:-7.02224,0,-19.6439	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6039	0/0:118:118,0:118:4201:0:0:0,-35.5215,-378.196	0/1:139:80,59:80:2852:59:2112:-146.557,0,-214.898	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.598	0/1:4:1,3:1:36:3:108:-8.83463,0,-2.39371	0/1:141:63,78:63:2244:78:2789:-207.189,0,-159.46	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9202	0/0:149:149,0:149:5252:0:0:0,-44.8535,-472.301	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.635	0/1:35:23,12:23:820:12:432:-28.4418,0,-63.5737	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.83	0/1:116:59,57:59:2108:57:2036:-147.277,0,-154.124	0/1:170:74,96:74:2644:96:3431:-255.443,0,-186.924	0/0:111:111,0:111:3941:0:0:0,-33.4143,-354.828	0/1:142:67,75:67:2404:75:2675:-195.601,0,-173.785	0/0:206:206,0:206:7312:0:0:0,-62.0122,-658.051	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:142:75,67:75:2672:67:2400:-171.759,0,-197.861	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.5	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3076	0/0:138:137,1:137:4876:1:36:0,-37.9634,-434.941	0/0:39:38,1:38:1364:1:36:0,-8.16674,-119.333	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:73:73,0:73:2585:0:0:0,-21.9752,-231.924	0/1:77:41,36:41:1463:36:1246:-88.6242,0,-108.75	0/1:5:2,3:2:68:3:108:-8.50047,0,-4.95256	0/1:190:99,90:99:3532:90:3212:-229.382,0,-260.755	0/1:199:84,115:84:2993:115:4113:-305.885,0,-209.538	0/0:76:71,5:71:2525:5:180:0,-6.41595,-211	0/0:65:65,0:65:2305:0:0:0,-19.5669,-207.7	0/1:152:76,76:76:2712:76:2707:-194.555,0,-198.425	0/0:141:141,0:141:5033:0:0:0,-42.4452,-451.832	0/1:18:10,8:10:352:8:288:-20.1172,0,-26.5956	0/1:84:41,43:41:1456:43:1527:-111.781,0,-105.982	0/1:59:31,28:31:1112:28:995:-70.8046,0,-82.6306	0/1:31:20,11:20:720:11:396:-26.0064,0,-55.7114	0/1:140:71,69:71:2524:69:2441:-176.394,0,-182.241	0/1:94:40,54:40:1432:54:1919:-143.27,0,-100.793	0/0:188:188,0:188:6712:0:0:0,-56.5936,-603.17	0/1:212:104,108:104:3713:108:3852:-279.56,0,-270.448	0/0:95:95,0:95:3400:0:0:0,-28.5978,-305.379	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.448	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.5163	0/0:97:97,0:97:3433:0:0:0,-29.1999,-308.897	0/1:112:57,55:57:2028:55:1935:-139.108,0,-148.814	0/1:272:144,128:144:5132:128:4556:-324.838,0,-380.075	0/1:73:34,39:34:1220:39:1392:-102.31,0,-87.8188	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.711	0/1:50:27,23:27:942:23:828:-59.3257,0,-70.0353	0/1:72:31,41:31:1116:41:1461:-108.431,0,-79.0184	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.374	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.084	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.477	0/1:18:11,7:11:396:7:248:-17.133,0,-30.4002	0/1:48:29,19:29:1035:19:672:-46.0765,0,-78.4301	0/1:29:11,18:11:396:18:644:-48.8921,0,-27.2118	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.6902	0/0:52:52,0:52:1853:0:0:0,-15.6536,-166.955
chr01	266193	.	T	G	36505.1	PASS	AB=0.534771;ABP=46.3498;AC=41;AF=0.218085;AN=188;AO=2212;CIGAR=1X;DP=9329;DPB=9329;DPRA=1.13673;EPP=4806.31;EPPR=15394.5;GTI=0;LEN=1;MEANALT=1.06522;MQM=47.0913;MQMR=59.6405;NS=94;NUMALT=1;ODDS=0.0595774;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78232;QR=250256;RO=7112;RPL=0;RPP=4806.31;RPPR=15394.5;RPR=2212;RUN=1;SAF=0;SAP=4806.31;SAR=2212;SRF=0;SRP=15446.5;SRR=7112;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:40,23:40:1408:23:816:-54.3406,0,-108.03	0/0:107:107,0:107:3770:0:0:0,-32.2102,-338.366	0/0:248:248,0:248:8795:0:0:0,-74.6554,-790.823	0/0:234:234,0:234:8221:0:0:0,-70.441,-739.875	0/0:63:63,0:63:2225:0:0:0,-18.9649,-200.503	0/0:63:63,0:63:2207:0:0:0,-18.9649,-198.693	0/0:227:227,0:227:7963:0:0:0,-68.3338,-716.6	0/0:123:123,0:123:4315:0:0:0,-37.0267,-388.219	0/0:132:132,0:132:4648:0:0:0,-39.736,-418.413	0/0:127:125,1:125:4422:1:32:0,-35.0795,-394.938	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.554	0/1:51:23,28:23:807:28:980:-72.006,0,-57.5966	0/1:48:28,20:28:973:20:716:-49.9531,0,-73.4224	0/1:46:27,19:27:964:19:665:-45.631,0,-73.1921	0/1:48:22,26:22:771:26:936:-68.97,0,-55.2593	0/0:43:43,0:43:1515:0:0:0,-12.9443,-136.639	0/0:68:68,0:68:2371:0:0:0,-20.47,-213.611	0/1:48:30,18:30:1047:18:648:-43.8988,0,-79.8528	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.703	0/0:290:290,0:290:10237:0:0:0,-87.2987,-920.825	0/1:158:70,88:70:2465:88:3098:-228.686,0,-174.532	0/1:116:23,93:23:797:93:3281:-255.807,0,-37.1258	0/0:109:108,0:108:3793:0:0:0,-32.5112,-341.207	0/1:168:63,105:63:2212:105:3750:-282.643,0,-148.773	0/0:132:132,0:132:4635:0:0:0,-39.736,-417.126	0/0:294:294,0:294:10325:0:0:0,-88.5028,-928.528	0/1:266:104,162:104:3668:162:5714:-427.464,0,-250.249	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0888	0/0:343:343,0:343:12055:0:0:0,-103.253,-1084.41	0/0:99:99,0:99:3508:0:0:0,-29.802,-315.05	0/1:155:79,76:79:2777:76:2702:-192.316,0,-203.509	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:21:21,0:21:736:0:0:0,-6.32163,-66.5608	0/1:7:1,6:1:36:6:208:-16.4072,0,-1.49106	0/1:19:10,9:10:352:9:324:-23.6302,0,-26.2986	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3237	0/0:135:135,0:135:4784:0:0:0,-40.639,-430.713	0/1:156:74,82:74:2600:82:2914:-213.182,0,-187.264	0/0:63:63,0:63:2200:0:0:0,-18.9649,-198.24	0/1:7:1,6:1:32:6:216:-17.2555,0,-1.0921	0/1:180:74,105:74:2589:105:3691:-275.068,0,-179.014	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.1813	0/0:152:152,0:152:5355:0:0:0,-45.7566,-482.052	0/0:42:42,0:42:1484:0:0:0,-12.6433,-133.851	0/1:35:20,14:20:708:14:492:-33.3684,0,-53.454	0/0:140:139,1:139:4879:1:27:0,-39.4485,-436.374	0/1:122:59,63:59:2068:63:2242:-163.666,0,-149.576	0/1:122:50,72:50:1776:72:2523:-188.393,0,-123.397	0/0:129:128,1:128:4536:1:36:0,-35.2661,-404.841	0/1:117:55,62:55:1947:62:2205:-159.657,0,-140.197	0/0:188:188,0:188:6567:0:0:0,-56.5936,-591.051	0/0:9:9,0:9:307:0:0:0,-2.70927,-27.9602	0/1:124:49,75:49:1725:75:2667:-199.898,0,-118.083	0/0:74:74,0:74:2624:0:0:0,-22.2762,-236.404	0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9347	0/0:119:118,0:118:4151:0:0:0,-35.5215,-372.6	0/0:76:76,0:76:2668:0:0:0,-22.8783,-240.367	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:35:35,0:35:1209:0:0:0,-10.536,-109.088	0/0:92:92,0:92:3240:0:0:0,-27.6948,-291.773	0/1:67:38,29:38:1344:29:1020:-71.1934,0,-101.091	0/1:8:3,5:3:108:5:180:-13.9991,0,-7.66693	0/1:170:87,83:87:3072:83:2937:-210.873,0,-225.537	0/1:173:76,97:76:2650:97:3407:-250.819,0,-186.669	0/0:44:44,0:44:1542:0:0:0,-13.2453,-138.976	0/0:79:79,0:79:2731:0:0:0,-23.7814,-245.994	0/1:194:98,96:98:3414:96:3361:-241.259,0,-249.076	0/0:124:123,1:123:4338:1:36:0,-33.7609,-386.882	0/1:25:13,12:13:447:12:417:-30.0795,0,-33.0319	0/1:150:75,75:75:2643:75:2637:-188.94,0,-192.707	0/1:65:32,33:32:1148:33:1188:-85.6803,0,-84.0366	0/1:18:5,13:5:161:13:451:-35.1887,0,-9.38797	0/1:167:76,91:76:2692:91:3225:-236.778,0,-191.281	0/1:60:38,22:38:1360:22:783:-52.3618,0,-104.622	0/0:176:176,0:176:6190:0:0:0,-52.9813,-556.25	0/1:189:90,99:90:3179:99:3540:-258.77,0,-229.439	0/0:217:216,1:216:7627:1:36:0,-61.7447,-681.921	0/0:54:54,0:54:1886:0:0:0,-16.2556,-169.808	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1197	0/0:98:98,0:98:3451:0:0:0,-29.5009,-310.802	0/1:173:78,95:78:2768:95:3357:-248.307,0,-197.244	0/1:267:131,136:131:4594:136:4843:-349.982,0,-333.256	0/1:55:26,29:26:923:29:1035:-75.7849,0,-66.8301	0/0:42:42,0:42:1468:0:0:0,-12.6433,-132.413	0/1:66:38,28:38:1347:28:972:-67.2219,0,-101.659	0/1:86:45,41:45:1592:41:1463:-104.071,0,-117.316	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5356	0/0:38:38,0:38:1336:0:0:0,-11.4391,-120.442	0/0:55:55,0:55:1912:0:0:0,-16.5566,-172.329	0/1:36:17,19:17:604:19:671:-48.865,0,-43.8504	0/1:58:36,22:36:1230:22:744:-49.0814,0,-93.4949	0/1:44:14,30:14:496:30:1046:-80.0313,0,-31.7268	0/0:48:48,0:48:1691:0:0:0,-14.4494,-152.475	0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.742
chr01	284385	.	G	A	9323.01	PASS	AB=0.402314;ABP=131.981;AC=39;AF=0.207447;AN=188;AO=629;CIGAR=1X;DP=3703;DPB=3703;DPRA=1.04189;EPP=1368.87;EPPR=6667.26;GTI=2;LEN=1;MEANALT=1;MQM=59.9841;MQMR=59.9889;NS=94;NUMALT=1;ODDS=0.412654;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22544;QR=109951;RO=3073;RPL=629;RPP=1368.87;RPPR=6675.95;RPR=0;RUN=1;SAF=0;SAP=1368.87;SAR=629;SRF=1;SRP=6667.26;SRR=3072;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:11,9:11:392:9:324:-23.4853,0,-29.5995	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/0:139:139,0:139:4956:0:0:0,-41.8432,-446.192	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:57:54,3:54:1920:3:108:0,-7.08354,-163.002	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.942	0/1:48:26,22:26:920:22:789:-56.8856,0,-68.6676	0/1:53:30,23:30:1071:23:828:-58.8895,0,-80.747	0/1:30:19,11:19:684:11:396:-26.9518,0,-52.8594	0/1:46:32,14:32:1144:14:496:-31.1269,0,-89.4221	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/0:25:25,0:25:874:0:0:0,-7.52575,-78.9752	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/1:62:42,20:42:1504:20:716:-46.1039,0,-116.991	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:165:165,0:165:5895:0:0:0,-49.6699,-530.658	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.97	0/1:36:22,14:22:788:14:504:-34.861,0,-60.4077	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:64:32,32:32:1152:32:1144:-83.9898,0,-84.7242	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:30:16,14:16:567:14:495:-35.8521,0,-42.3298	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:36:19,17:19:680:17:608:-44.2149,0,-50.6921	0/1:46:23,23:23:824:23:815:-59.824,0,-60.6359	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:39:28,11:28:1004:11:392:-23.8799,0,-78.9357	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:57:39,18:39:1404:18:648:-41.4932,0,-109.501	0/0:18:17,0:17:608:0:0:0,-5.11751,-54.7371	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:66:38,28:38:1364:28:1004:-70.8079,0,-103.193	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:113:57,56:57:2036:56:2009:-147.067,0,-149.496	0/1:50:27,23:27:964:23:824:-59.4318,0,-72.0253	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.484	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:27:18,9:18:635:9:324:-21.378,0,-49.3492	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/1:34:20,14:20:712:14:500:-35.1012,0,-54.1716	0/1:12:10,2:10:352:2:72:-3.22436,0,-28.4058	0/1:98:62,36:62:2216:36:1292:-87.0828,0,-170.204	0/1:36:19,17:19:676:17:612:-44.5764,0,-50.3309	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:55:25,30:25:896:30:1076:-80.5962,0,-64.4037	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:47:29,18:29:1040:18:648:-44.5035,0,-79.766	0/1:61:43,18:43:1544:18:644:-39.9278,0,-120.89	0/1:43:23,20:23:815:20:720:-52.1845,0,-60.7265	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	0/1:64:42,22:42:1504:22:792:-52.3398,0,-116.389	0/0:27:27,0:27:964:0:0:0,-8.12781,-86.9469	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:25:19,6:19:680:6:216:-12.2648,0,-53.9988	0/1:77:50,27:50:1788:27:964:-63.8975,0,-138.023	0/1:22:13,9:13:468:9:320:-22.5197,0,-35.837	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062
chr01	321579	.	C	T	83880.5	PASS	AB=0.528851;ABP=18.9229;AC=147;AF=0.781915;AN=188;AO=3919;CIGAR=1X;DP=4965;DPB=4965;DPRA=53.3763;EPP=8513.01;EPPR=2272.2;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.9696;MQMR=59.9818;NS=94;NUMALT=1;ODDS=2.75885;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140480;QR=37364;RO=1045;RPL=0;RPP=8513.01;RPPR=2272.2;RPR=3919;RUN=1;SAF=3919;SAP=8513.01;SAR=0;SRF=1045;SRP=2272.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:5,5:5:180:5:176:-13.1734,0,-13.5418	1/1:41:0,41:0:0:41:1454:-131.154,-12.3422,0	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:144:1,143:1:36:143:5148:-459.86,-39.75,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:66:2,64:2:72:64:2285:-199.074,-13.0313,0	1/1:36:0,36:0:0:36:1283:-115.773,-10.8371,0	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:50:18,32:18:648:32:1152:-88.9386,0,-43.6004	0/1:47:24,23:24:860:23:824:-60.3349,0,-63.5734	0/1:66:31,35:31:1112:35:1260:-93.8375,0,-80.5234	0/1:35:18,17:18:640:17:612:-44.8774,0,-47.3933	1/1:49:0,49:0:0:49:1748:-157.604,-14.7505,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:36:17,19:17:612:19:678:-50.5116,0,-44.5764	1/1:26:0,26:0:0:26:923:-83.3808,-7.82678,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:91:34,57:34:1220:57:2036:-156.119,0,-82.7131	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:27:13,14:13:460:14:500:-37.2084,0,-33.6076	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:118:0,118:0:0:118:4232:-381.059,-35.5215,0	0/1:116:58,58:58:2076:58:2073:-151.921,0,-152.191	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:272:0,272:0:0:272:9750:-876.956,-81.8802,0	1/1:120:1,119:1:36:119:4252:-379.262,-32.5253,0	0/1:72:28,44:28:1008:44:1580:-120.817,0,-69.3622	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:4:0,4:0:0:4:143:-13.2214,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:129:0,129:0:0:129:4621:-416.053,-38.8329,0	0/1:59:35,24:35:1256:24:864:-60.3218,0,-95.5845	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:78:28,50:28:1008:50:1792:-138.078,0,-67.556	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:43:17,26:17:612:26:932:-71.2546,0,-42.4691	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:86:44,42:44:1560:42:1504:-109.766,0,-114.803	1/1:63:0,63:0:0:63:2245:-202.312,-18.9649,0	0/1:67:28,39:28:996:39:1400:-106.13,0,-69.7859	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:68:36,32:36:1288:32:1152:-83.5201,0,-95.7535	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:107:0,107:0:0:107:3832:-345.077,-32.2102,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7896,-1.80618,0	1/1:68:0,68:0:0:68:2425:-218.505,-20.47,0	0/1:92:53,39:53:1900:39:1404:-98.9645,0,-143.583	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:177:89,88:89:3188:88:3156:-230.981,0,-233.861	0/1:75:41,34:41:1468:34:1224:-87.8898,0,-109.839	1/1:55:3,51:3:99:51:1818:-154.657,-7.37138,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:49:21,28:21:756:28:1004:-75.9254,0,-53.6168	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	0/1:17:10,7:10:356:7:252:-17.8827,0,-27.2637	0/1:30:20,10:20:716:10:360:-23.7134,0,-55.7286	0/1:43:18,25:18:630:25:900:-68.3767,0,-44.0627	0/1:19:9,10:9:316:10:360:-26.9544,0,-23.0593	0/1:72:32,40:32:1152:40:1432:-107.503,0,-82.316	0/1:66:26,40:26:916:40:1432:-109.31,0,-62.8885	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	0/1:178:81,97:81:2892:97:3488:-260.546,0,-206.933	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:134:0,134:0:0:134:4816:-433.575,-40.338,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:69:0,69:0:0:69:2471:-222.643,-20.7711,0	0/1:64:29,35:29:1036:35:1254:-93.8994,0,-74.288	0/1:52:24,28:24:856:28:1000:-74.6618,0,-61.7075	0/1:34:11,23:11:392:23:824:-64.2483,0,-25.385	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/1:61:33,28:33:1176:28:1008:-72.6735,0,-87.7849	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:24:13,11:13:455:11:392:-28.3953,0,-34.0572	0/1:68:23,45:23:824:45:1620:-125.62,0,-54.0133	0/1:35:24,11:24:864:11:396:-25.4467,0,-67.5465	1/1:166:0,166:0:0:166:5944:-535.039,-49.971,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0
chr01	426509	.	A	G	138648	PASS	AB=0.510014;ABP=6.66359;AC=145;AF=0.771277;AN=188;AO=6633;CIGAR=1X;DP=8699;DPB=8699;DPRA=0;EPP=14406.4;EPPR=4461.06;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9563;MQMR=59.9719;NS=94;NUMALT=1;ODDS=0.73912;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235347;QR=73200;RO=2061;RPL=6633;RPP=14406.4;RPPR=4461.06;RPR=0;RUN=1;SAF=6633;SAP=14406.4;SAR=0;SRF=2061;SRP=4478.41;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:23,40:23:812:40:1436:-110.519,0,-54.436	1/1:94:0,94:0:0:94:3359:-302.518,-28.2968,0	1/1:162:1,161:1:36:161:5744:-513.451,-45.1686,0	1/1:246:0,246:0:0:246:8730:-785.697,-74.0534,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:47:0,47:0:0:47:1675:-151.036,-14.1484,0	1/1:105:1,104:1:36:104:3679:-327.714,-28.0099,0	1/1:114:0,114:0:0:114:4029:-362.799,-34.3174,0	1/1:90:0,90:0:0:90:3144:-283.185,-27.0927,0	1/1:74:0,74:0:0:74:2640:-237.847,-22.2762,0	1/1:47:0,47:0:0:47:1631:-147.072,-14.1484,0	0/1:82:38,43:38:1344:43:1536:-113.79,0,-96.517	0/1:89:40,49:40:1416:49:1721:-128.382,0,-100.946	0/1:48:19,29:19:680:29:1004:-76.1966,0,-47.0797	0/1:67:27,40:27:955:40:1402:-106.307,0,-66.0958	1/1:60:1,59:1:36:59:2037:-180,-14.4635,0	1/1:24:0,24:0:0:24:856:-77.3435,-7.22472,0	0/1:37:19,18:19:680:18:640:-46.7912,0,-50.3911	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:153:0,153:0:0:153:5445:-490.18,-46.0576,0	0/1:189:97,92:97:3468:92:3283:-238.793,0,-255.438	0/1:127:84,43:84:2988:43:1536:-100.302,0,-230.923	1/1:110:0,110:0:0:110:3922:-353.172,-33.1133,0	0/1:73:24,49:24:845:49:1752:-135.989,0,-54.3919	1/1:78:0,78:0:0:78:2751:-247.832,-23.4803,0	1/1:187:0,185:0:0:185:6591:-592.912,-55.6906,0	0/1:302:132,170:132:4716:170:6049:-453.605,0,-333.69	1/1:32:0,32:0:0:32:1121:-101.196,-9.63296,0	1/1:289:0,289:0:0:289:10254:-922.787,-86.9977,0	1/1:173:1,172:1:36:172:6134:-548.56,-48.4799,0	0/1:119:61,58:61:2166:58:2080:-151.648,0,-159.383	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:12:8,4:8:280:4:144:-9.70126,0,-21.9269	1/1:24:0,24:0:0:24:847:-76.5479,-7.22472,0	0/1:204:91,113:91:3221:113:4011:-299.77,0,-228.703	0/1:162:89,73:89:3157:73:2583:-183.95,0,-235.584	1/1:36:0,36:0:0:36:1271:-114.692,-10.8371,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:133:48,85:48:1694:85:3021:-232.069,0,-112.708	1/1:37:0,37:0:0:37:1252:-112.974,-11.1381,0	1/1:187:0,187:0:0:187:6675:-600.827,-56.2926,0	1/1:59:0,59:0:0:59:2070:-186.567,-17.7608,0	0/1:56:25,31:25:891:31:1066:-79.3854,0,-63.0224	1/1:139:0,139:0:0:139:4939:-444.661,-41.8432,0	0/1:132:60,72:60:2144:72:2554:-190.375,0,-153.492	0/1:177:92,85:92:3263:85:3039:-220.457,0,-240.61	1/1:102:0,102:0:0:102:3624:-326.345,-30.7051,0	0/1:101:51,50:51:1820:50:1770:-129.178,0,-133.677	1/1:120:0,119:0:0:119:4223:-379.891,-35.8226,0	1/1:14:0,14:0:0:14:476:-43.1619,-4.21442,0	0/1:124:65,59:65:2287:59:2097:-151.64,0,-168.748	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:154:0,154:0:0:154:5486:-493.868,-46.3586,0	1/1:47:0,47:0:0:47:1657:-149.415,-14.1484,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	0/1:90:38,52:38:1344:52:1842:-138.966,0,-94.1674	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:150:62,88:62:2207:88:3135:-237.222,0,-153.74	0/1:186:103,83:103:3657:83:2937:-208.57,0,-273.343	1/1:53:2,51:2:72:51:1796:-155.082,-9.11787,0	1/1:84:1,83:1:36:83:2956:-262.673,-21.6882,0	0/1:157:91,66:91:3264:66:2338:-163.416,0,-246.718	1/1:181:0,181:0:0:181:6447:-580.313,-54.4864,0	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	0/1:59:31,28:31:1104:28:983:-71.0218,0,-81.9099	0/1:53:20,33:20:697:33:1151:-87.4478,0,-47.0961	0/1:12:8,4:8:280:4:144:-9.70126,0,-21.9269	0/1:151:91,60:91:3256:60:2128:-146.333,0,-247.802	0/1:135:78,57:78:2788:57:2040:-143.233,0,-210.522	1/1:157:0,157:0:0:157:5605:-504.571,-47.2617,0	0/1:124:71,53:71:2548:53:1895:-133.5,0,-192.243	1/1:93:0,93:0:0:93:3318:-298.743,-27.9958,0	1/1:75:0,75:0:0:75:2688:-242.156,-22.5773,0	1/1:18:0,18:0:0:18:630:-57.0246,-5.41854,0	1/1:91:0,90:0:0:90:3220:-289.663,-27.0927,0	0/1:97:48,49:48:1673:49:1735:-127.232,0,-121.655	0/1:177:75,102:75:2660:102:3643:-274.792,0,-186.36	0/1:75:31,44:31:1103:44:1545:-116.763,0,-77.0026	1/1:90:0,90:0:0:90:3161:-284.715,-27.0927,0	0/1:57:28,29:28:991:29:989:-72.155,0,-72.3448	0/1:124:61,63:61:2163:63:2215:-162.285,0,-157.609	1/1:23:0,23:0:0:23:787:-71.1452,-6.92369,0	1/1:76:0,76:0:0:76:2675:-240.993,-22.8783,0	1/1:78:0,78:0:0:78:2776:-250.082,-23.4803,0	0/1:22:8,14:8:288:14:491:-37.8985,0,-19.6447	0/1:90:41,49:41:1439:49:1723:-128.262,0,-102.712	0/1:79:49,30:49:1691:30:1059:-71.8391,0,-128.691	1/1:143:0,143:0:0:143:5097:-458.874,-43.0473,0	1/1:88:0,88:0:0:88:3079:-277.335,-26.4906,0
chr01	426590	.	G	A	176076	PASS	AB=0.49291;ABP=5.44293;AC=143;AF=0.777174;AN=184;AO=8427;CIGAR=1X;DP=11269;DPB=11269;DPRA=0;EPP=18302;EPPR=6172.16;GTI=1;LEN=1;MEANALT=1.01087;MQM=52.8718;MQMR=59.4984;NS=92;NUMALT=1;ODDS=0.562475;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=300143;QR=99814;RO=2841;RPL=15;RPP=18172;RPPR=6120.16;RPR=8412;RUN=1;SAF=15;SAP=18172;SAR=8412;SRF=6;SRP=6120.16;SRR=2835;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:21,18:21:724:18:644:-46.2197,0,-53.7357	1/1:171:0,171:0:0:171:6087:-543.925,-51.4761,0	1/1:148:1,147:1:36:147:5198:-461.338,-40.9542,0	1/1:232:0,232:0:0:232:8259:-740.343,-69.839,0	1/1:66:0,66:0:0:66:2367:-212.275,-19.868,0	1/1:51:0,51:0:0:51:1821:-163.242,-15.3525,0	1/1:137:0,137:0:0:137:4874:-438.139,-41.2411,0	1/1:220:2,218:2:72:218:7770:-687.935,-59.3899,0	1/1:115:0,115:0:0:115:4076:-365.43,-34.6185,0	1/1:138:0,138:0:0:138:4936:-442.92,-41.5421,0	1/1:48:1,47:1:36:47:1680:-147.71,-10.8512,0	0/1:79:37,42:37:1316:42:1499:-110.895,0,-94.9523	0/1:83:37,46:37:1266:46:1652:-123.327,0,-89.1796	0/1:93:46,47:46:1557:47:1671:-121.545,0,-112.242	0/1:71:34,37:34:1174:37:1313:-96.8779,0,-84.5843	1/1:62:0,62:0:0:62:2178:-195.752,-18.6639,0	1/1:89:0,89:0:0:89:3164:-283.473,-26.7917,0	0/1:74:34,40:34:1143:40:1420:-105.43,0,-80.8868	1/1:24:0,24:0:0:24:855:-76.8027,-7.22472,0	1/1:211:0,211:0:0:211:7510:-674.55,-63.5173,0	0/1:160:68,92:68:2412:92:3300:-247.951,0,-169.123	0/1:144:102,42:102:3592:42:1497:-91.147,0,-279.894	1/1:127:0,127:0:0:127:4489:-402.018,-38.2308,0	0/1:147:80,67:80:2820:67:2388:-170.118,0,-209.772	1/1:137:0,137:0:0:137:4865:-435.959,-41.2411,0	1/1:432:0,432:0:0:432:15387:-1378.84,-130.045,0	0/1:233:113,119:113:4036:119:4261:-311.909,0,-293.024	1/1:40:1,39:1:36:39:1367:-119.426,-8.44293,0	1/1:346:0,346:0:0:346:12345:-1104.27,-104.156,0	1/1:202:2,200:2:72:200:7065:-625.226,-53.9713,0	0/1:127:74,53:74:2605:53:1887:-131.359,0,-196.266	1/1:5:0,5:0:0:5:180:-16.401,-1.50515,0	0/1:12:4,8:4:140:8:288:-22.4913,0,-9.33222	1/1:7:0,7:0:0:7:252:-22.9654,-2.10721,0	0/1:4:1,3:1:36:3:108:-8.84572,0,-2.39415	.:.:.:.:.:.:.:.	0/1:245:119,126:119:4148:126:4498:-326.837,0,-299.731	0/1:388:200,188:200:7020:188:6703:-484.908,0,-514.372	1/1:58:0,58:0:0:58:2082:-186.748,-17.4597,0	.:.:.:.:.:.:.:.	0/1:190:99,91:99:3513:91:3267:-235.875,0,-259.17	1/1:31:0,31:0:0:31:1103:-99.3781,-9.33193,0	1/1:132:0,132:0:0:132:4688:-419.719,-39.736,0	1/1:107:1,106:1:36:106:3781:-335.08,-28.6119,0	0/1:72:35,37:35:1227:37:1301:-94.5247,0,-89.0565	1/1:113:1,112:1:36:112:3998:-355.371,-30.4181,0	0/1:156:88,68:88:3098:68:2425:-170.982,0,-231.964	0/1:257:128,129:128:4529:129:4610:-337.092,0,-330.398	1/1:149:0,149:0:0:149:5296:-475.702,-44.8535,0	0/1:201:104,97:104:3681:97:3455:-249.451,0,-270.334	1/1:206:0,206:0:0:206:7349:-657.738,-62.0122,0	1/1:13:0,13:0:0:13:463:-41.9375,-3.91339,0	0/1:144:71,73:71:2489:73:2601:-189.502,0,-180.874	1/1:54:0,54:0:0:54:1933:-172.94,-16.2556,0	1/1:15:0,15:0:0:15:540:-48.8135,-4.51545,0	1/1:161:2,159:2:72:159:5637:-499.15,-41.6307,0	1/1:56:0,56:0:0:56:2003:-180.171,-16.8577,0	1/1:11:0,11:0:0:11:388:-35.1745,-3.31133,0	1/1:18:0,18:0:0:18:648:-58.3218,-5.41854,0	1/1:131:0,131:0:0:131:4681:-419.674,-39.4349,0	0/1:115:56,59:56:1915:59:2117:-155.844,0,-138.001	0/1:6:4,2:4:129:2:72:-4.36734,0,-10.1215	0/1:358:198,160:198:6973:160:5709:-403.632,0,-519.78	0/1:264:128,136:128:4532:136:4866:-357.459,0,-328.471	1/1:87:1,86:1:36:86:3058:-270.626,-22.5913,0	1/1:97:0,97:0:0:97:3436:-309.1,-29.1999,0	0/1:236:133,103:133:4706:103:3708:-262.215,0,-352.598	1/1:111:1,110:1:36:110:3912:-348.009,-29.8161,0	0/1:20:9,11:9:324:11:396:-29.8983,0,-23.4853	0/1:72:38,34:38:1324:34:1224:-88.5116,0,-97.7654	0/1:103:46,57:46:1588:57:2040:-150.911,0,-112.182	0/1:16:3,13:3:108:13:468:-37.4805,0,-5.25627	0/1:151:86,65:86:3032:65:2321:-162.698,0,-227.476	0/1:87:37,50:37:1307:50:1792:-134.954,0,-91.733	1/1:172:0,172:0:0:172:6102:-546.338,-51.7772,0	0/1:239:101,138:101:3592:138:4941:-372.015,0,-251.445	1/1:121:0,121:0:0:121:4287:-383.675,-36.4246,0	1/1:106:2,104:2:72:104:3708:-325.817,-25.0725,0	1/1:21:0,21:0:0:21:748:-67.4573,-6.32163,0	1/1:173:0,173:0:0:173:6111:-547.252,-52.0782,0	0/1:135:61,74:61:2167:74:2636:-195.798,0,-154.596	0/1:240:118,122:118:4173:122:4358:-319.372,0,-303.496	0/1:112:51,61:51:1783:61:2160:-160.388,0,-127.009	1/1:68:1,67:1:36:67:2386:-211.099,-16.8718,0	0/1:135:63,72:63:2187:72:2563:-189.81,0,-156.401	0/1:202:103,99:103:3611:99:3509:-254.2,0,-264.232	1/1:68:0,68:0:0:68:2432:-217.189,-20.47,0	1/1:100:0,100:0:0:100:3517:-315.598,-30.103,0	1/1:64:1,63:1:36:63:2260:-199.282,-15.6676,0	0/1:24:13,11:13:433:11:387:-27.7349,0,-32.0603	0/1:61:29,32:29:995:32:1144:-84.6359,0,-71.4675	0/1:76:52,24:52:1797:24:851:-53.8102,0,-139.11	1/1:133:0,133:0:0:133:4748:-426.694,-40.037,0	1/1:114:0,114:0:0:114:4073:-365.851,-34.3174,0
chr01	449623	.	A	G	226206	PASS	AB=0.472163;ABP=47.4989;AC=147;AF=0.781915;AN=188;AO=10846;CIGAR=1X;DP=14366;DPB=14366;DPRA=0;EPP=23546.1;EPPR=7549.04;GTI=0;LEN=1;MEANALT=1.11702;MQM=59.6974;MQMR=59.5304;NS=94;NUMALT=1;ODDS=3.22945;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=383699;QR=125539;RO=3507;RPL=10846;RPP=23554.8;RPPR=7549.04;RPR=0;RUN=1;SAF=1;SAP=23546.1;SAR=10845;SRF=0;SRP=7618.36;SRR=3507;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	1/1:314:0,313:0:0:313:11054:-994.371,-94.2224,0	1/1:186:1,185:1:36:185:6552:-586.02,-52.3933,0	1/1:408:0,408:0:0:408:14536:-1307.56,-122.82,0	1/1:81:0,81:0:0:81:2844:-256.148,-24.3834,0	1/1:62:0,62:0:0:62:2196:-197.906,-18.6639,0	1/1:206:0,205:0:0:205:7275:-653.655,-61.7112,0	1/1:226:0,225:0:0:225:7980:-717.712,-67.7318,0	1/1:111:0,110:0:0:110:3904:-351.272,-33.1133,0	1/1:207:0,207:0:0:207:7290:-656.076,-62.3132,0	1/1:77:0,77:0:0:77:2729:-245.752,-23.1793,0	0/1:89:49,40:49:1764:40:1428:-102.012,0,-129.781	0/1:65:37,28:37:1332:28:992:-70.0273,0,-100.588	0/1:80:41,39:41:1454:39:1370:-99.5146,0,-105.778	0/1:89:42,47:42:1512:47:1664:-123.232,0,-109.578	1/1:84:0,84:0:0:84:2991:-269.422,-25.2865,0	1/1:72:0,72:0:0:72:2554:-230.101,-21.6742,0	0/1:74:36,37:36:1292:37:1294:-94.4248,0,-94.2484	1/1:76:0,76:0:0:76:2688:-242.166,-22.8783,0	1/1:498:0,498:0:0:498:17571:-1580.85,-149.913,0	0/1:237:132,105:132:4712:105:3699:-261.69,0,-352.769	0/1:463:315,148:315:11263:148:5221:-330.657,0,-873.383	1/1:126:0,126:0:0:126:4468:-402.143,-37.9298,0	0/1:166:74,92:74:2644:92:3272:-244.622,0,-188.212	1/1:128:0,128:0:0:128:4527:-407.575,-38.5318,0	1/1:528:0,528:0:0:528:18608:-1673.19,-158.944,0	0/1:395:190,204:190:6797:204:7255:-533.863,0,-492.915	1/1:48:0,48:0:0:48:1699:-153.194,-14.4494,0	1/1:705:1,704:1:36:704:24905:-2236.78,-208.628,0	1/1:243:4,239:4:144:239:8490:-750.739,-59.8367,0	0/1:203:114,89:114:4092:89:3165:-223.966,0,-307.147	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:47:0,45:0:0:45:1573:-141.526,-13.5464,0	0/1:20:8,12:8:288:12:420:-32.1134,0,-20.2468	0/1:16:8,8:8:288:8:280:-19.4315,0,-21.4509	1/1:17:0,17:0:0:17:604:-54.6768,-5.11751,0	0/1:220:120,100:120:4312:100:3523:-251.052,0,-320.837	0/1:212:106,106:106:3796:106:3734:-271.127,0,-275.287	1/1:90:0,90:0:0:90:3192:-287.486,-27.0927,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:225:127,98:127:4531:98:3474:-245.072,0,-340.068	1/1:57:0,56:0:0:56:2003:-180.099,-16.8577,0	1/1:158:0,158:0:0:158:5572:-501.493,-47.5627,0	1/1:94:1,93:1:36:93:3307:-294.193,-24.6985,0	0/1:83:43,40:43:1548:40:1386:-100.047,0,-114.623	1/1:116:0,116:0:0:116:4095:-367.222,-34.9195,0	0/1:176:93,82:93:3336:82:2915:-209.642,0,-247.557	0/1:293:159,134:159:5685:134:4720:-336.714,0,-423.421	1/1:191:0,191:0:0:191:6725:-603.858,-57.4967,0	0/1:212:96,116:96:3444:116:4099:-305.192,0,-246.354	1/1:221:0,221:0:0:221:7846:-706.172,-66.5276,0	1/1:24:1,23:1:36:23:824:-70.885,-3.62645,0	0/1:232:131,101:131:4704:101:3578:-252.344,0,-353.636	1/1:52:0,52:0:0:52:1844:-166.187,-15.6536,0	1/1:41:1,40:1:36:40:1419:-124.18,-8.74396,0	1/1:164:4,160:4:144:160:5637:-493.965,-36.0553,0	1/1:110:0,110:0:0:110:3899:-350.969,-33.1133,0	1/1:31:0,31:0:0:31:1095:-98.8004,-9.33193,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:93:1,92:1:36:92:3262:-290.158,-24.3975,0	0/1:80:40,40:40:1427:40:1406:-101.428,0,-104.644	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4142	0/1:305:162,143:162:5799:143:5066:-364.208,0,-430.091	0/1:295:167,128:167:5975:128:4543:-320.223,0,-449.036	1/1:83:4,79:4:144:79:2800:-238.877,-11.6719,0	1/1:151:1,150:1:36:150:5307:-474.104,-41.8573,0	0/1:255:128,127:128:4561:127:4475:-326.006,0,-332.191	1/1:140:3,137:3:108:137:4841:-425.582,-32.069,0	0/1:23:10,13:10:356:13:468:-35.536,0,-24.2487	0/1:160:81,79:81:2904:79:2763:-200.7,0,-213.393	0/1:98:45,53:45:1607:53:1895:-141.326,0,-114.612	0/1:28:20,8:20:712:8:280:-17.1105,0,-54.7791	0/1:136:75,61:75:2680:61:2176:-155.069,0,-199.942	0/1:105:51,54:51:1828:54:1920:-141.466,0,-133.173	1/1:254:0,254:0:0:254:9018:-811.587,-76.4616,0	0/1:291:142,149:142:5092:149:5269:-386.687,0,-370.803	1/1:174:0,174:0:0:174:6057:-543.92,-52.3792,0	1/1:183:1,182:1:36:182:6397:-572.222,-51.4902,0	1/1:52:0,52:0:0:52:1835:-165.427,-15.6536,0	1/1:214:0,214:0:0:214:7593:-683.11,-64.4204,0	0/1:350:166,181:166:5948:181:6399:-471.155,0,-430.484	0/1:294:155,139:155:5572:139:4889:-351.63,0,-409.666	0/1:109:54,55:54:1936:55:1960:-143.71,0,-141.637	1/1:77:0,77:0:0:77:2756:-248.201,-23.1793,0	0/1:126:56,70:56:1991:70:2466:-184.14,0,-141.52	0/1:150:63,87:63:2252:87:3076:-231.91,0,-154.882	1/1:44:0,44:0:0:44:1576:-142.131,-13.2453,0	1/1:77:0,77:0:0:77:2719:-244.952,-23.1793,0	1/1:75:0,75:0:0:75:2667:-240.23,-22.5773,0	0/1:55:33,22:33:1161:22:792:-55.049,0,-88.2217	0/1:87:46,41:46:1640:41:1460:-105.493,0,-119.043	0/1:94:58,36:58:2084:36:1254:-84.8591,0,-159.529	1/1:127:0,127:0:0:127:4490:-404.271,-38.2308,0	1/1:128:1,127:1:32:127:4491:-400.347,-35.3325,0
chr01	449983	.	A	G	23855.3	PASS	AB=0.453185;ABP=62.7853;AC=40;AF=0.215054;AN=186;AO=1431;CIGAR=1X;DP=6641;DPB=6641;DPRA=1.36159;EPP=2855.27;EPPR=11031.6;GTI=1;LEN=1;MEANALT=1;MQM=59.399;MQMR=59.9676;NS=93;NUMALT=1;ODDS=3.50149;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50739;QR=186359;RO=5210;RPL=1401;RPP=2855.27;RPPR=11031.6;RPR=30;RUN=1;SAF=0;SAP=3110.39;SAR=1431;SRF=0;SRP=11316.4;SRR=5210;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.432	0/0:75:75,0:75:2691:0:0:0,-22.5772,-242.434	0/0:132:132,0:132:4740:0:0:0,-39.736,-426.757	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.935	0/0:143:143,0:143:5120:0:0:0,-43.0473,-460.942	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:65:37,28:37:1328:28:1000:-70.6652,0,-100.255	0/1:85:46,39:46:1656:39:1383:-99.1713,0,-123.741	0/1:107:61,46:61:2188:46:1626:-114.284,0,-164.975	0/1:88:55,33:55:1964:33:1174:-79.4729,0,-150.545	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.072	0/1:84:46,38:46:1652:38:1364:-97.7523,0,-123.682	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.717	0/1:94:52,42:52:1841:42:1491:-106.167,0,-137.672	0/1:22:8,14:8:288:14:496:-38.3503,0,-19.6447	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/1:80:46,34:46:1644:34:1191:-82.3446,0,-123.796	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:188:188,0:188:6697:0:0:0,-56.5936,-602.805	0/1:95:48,47:48:1709:47:1658:-120.684,0,-125.496	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:124:124,0:124:4424:0:0:0,-37.3277,-396.881	0/0:106:106,0:106:3777:0:0:0,-31.9092,-340.128	0/1:41:26,15:26:928:15:532:-35.8662,0,-71.496	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:196:117,79:117:4204:79:2793:-192.598,0,-319.537	0/1:94:47,47:47:1680:47:1666:-121.913,0,-123.19	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:98:55,43:55:1976:43:1523:-107.852,0,-148.424	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8157	0/0:97:97,0:97:3452:0:0:0,-29.1999,-310.884	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:65:38,27:38:1355:27:947:-65.9718,0,-102.683	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.05	0/1:42:23,19:23:828:19:676:-48.5214,0,-62.2009	0/1:97:53,44:53:1884:44:1555:-111.04,0,-140.639	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:118:65,53:65:2313:53:1896:-135.329,0,-172.908	0/0:113:113,0:113:4036:0:0:0,-34.0164,-363.429	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:60:31,29:31:1099:29:1035:-75.3741,0,-81.1577	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8032	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:119:69,50:69:2476:50:1777:-124.358,0,-187.271	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:80:48,32:48:1720:32:1114:-76.2592,0,-131.003	0/1:145:73,72:73:2603:72:2544:-185.53,0,-190.869	0/0:104:101,3:101:3619:3:108:0,-21.2319,-315.839	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:96:61,35:61:2176:35:1248:-83.726,0,-167.205	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/1:40:24,16:24:864:16:574:-39.859,0,-66.0414	0/1:43:34,9:34:1212:9:320:-16.1981,0,-96.442	0/1:115:63,52:63:2264:52:1835:-130.807,0,-169.404	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/1:45:23,22:23:820:22:788:-57.6626,0,-60.5762	0/1:60:28,32:28:1008:32:1133:-83.7215,0,-72.9746	0/0:119:119,0:119:4264:0:0:0,-35.8226,-383.937	0/1:96:55,41:55:1976:41:1464:-103.154,0,-149.216	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:110:110,0:110:3906:0:0:0,-33.1133,-351.545	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:105:104,1:104:3727:1:36:0,-28.0099,-332.032	0/1:72:31,41:31:1112:41:1456:-109.634,0,-78.7172	0/1:144:91,53:91:3260:53:1883:-126.322,0,-250.272	0/1:98:56,42:56:2004:42:1487:-104.616,0,-151.133	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:114:55,59:55:1947:59:2099:-154.857,0,-141.188	0/1:141:78,63:78:2804:63:2194:-155.172,0,-210.154	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.89	0/0:91:90,1:90:3210:1:36:0,-23.7955,-285.516	0/1:39:16,23:16:576:23:815:-61.9306,0,-40.4348	0/1:56:27,29:27:968:29:1035:-76.5962,0,-70.5797	0/1:84:25,59:25:896:59:2112:-165.058,0,-55.6738	0/0:97:97,0:97:3459:0:0:0,-29.1999,-311.523	0/0:140:139,1:139:4971:1:36:0,-38.5459,-443.94
chr01	507412	.	T	C	127207	PASS	AB=0.501601;ABP=3.09373;AC=150;AF=0.797872;AN=188;AO=5782;CIGAR=1X;DP=7667;DPB=7667;DPRA=0;EPP=11907;EPPR=3768.16;GTI=18;LEN=1;MEANALT=1.06383;MQM=59.4827;MQMR=17.5583;NS=94;NUMALT=1;ODDS=0.19391;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206610;QR=67315;RO=1879;RPL=5706;RPP=11907;RPPR=3768.16;RPR=76;RUN=1;SAF=0;SAP=12558.5;SAR=5782;SRF=0;SRP=4083.21;SRR=1879;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:68:1,67:1:36:67:2395:-213.817,-18.4807,0	1/1:83:0,83:0:0:83:2972:-267.709,-24.9855,0	1/1:244:0,243:0:0:243:8656:-778.457,-73.1503,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:13:0,13:0:0:13:460:-41.7177,-3.91339,0	1/1:61:0,61:0:0:61:2179:-195.966,-18.3628,0	1/1:117:0,117:0:0:117:4144:-373.026,-35.2205,0	1/1:115:0,115:0:0:115:4123:-371.222,-34.6185,0	1/1:110:0,110:0:0:110:3916:-352.419,-33.1133,0	1/1:61:0,61:0:0:61:2176:-196.069,-18.3628,0	0/1:127:69,58:69:2476:58:2080:-149.214,0,-88.1795	0/1:111:57,54:57:2048:54:1928:-140.333,0,-68.6265	0/1:50:27,23:27:972:23:828:-59.7702,0,-33.3998	0/1:104:55,49:55:1972:49:1752:-126.572,0,-43.5667	1/1:80:0,80:0:0:80:2855:-257.165,-24.0824,0	1/1:35:0,35:0:0:35:1245:-112.034,-10.5361,0	0/1:45:19,26:19:684:26:936:-71.0131,0,-22.1267	1/1:36:0,36:0:0:36:1286:-116.006,-10.8371,0	1/1:131:0,131:0:0:131:4684:-421.495,-39.4349,0	0/1:159:104,55:104:3728:55:1956:-128.382,0,-139.833	0/1:39:16,23:16:576:23:800:-60.5101,0,-7.71127	1/1:107:0,107:0:0:107:3820:-343.84,-32.2102,0	0/1:43:23,20:23:828:20:701:-50.4674,0,-33.9356	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:250:0,250:0:0:250:8917:-802.186,-75.2575,0	0/1:235:118,117:118:4186:117:4194:-306.73,0,-146.793	1/1:46:0,46:0:0:46:1654:-149.089,-13.8474,0	1/1:221:0,220:0:0:220:7857:-706.31,-66.2266,0	1/1:82:0,82:0:0:82:2919:-262.817,-24.6845,0	0/1:68:32,36:32:1144:36:1296:-96.4739,0,-23.2254	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:13:10,3:10:360:3:108:-6.16178,0,-16.945	1/1:3:0,3:0:0:3:108:-10.057,-0.90309,0	0/1:242:115,127:115:4128:127:4545:-336.352,0,-52.6127	0/1:102:54,48:54:1944:48:1724:-124.718,0,-71.0787	1/1:51:0,51:0:0:51:1828:-164.779,-15.3525,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:87:40,47:40:1440:47:1680:-125.28,0,-49.4175	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:73:0,72:0:0:72:2588:-232.091,-21.6742,0	1/1:77:0,77:0:0:77:2764:-248.97,-23.1793,0	0/1:60:34,26:34:1224:26:932:-66.1371,0,-30.0053	1/1:68:0,68:0:0:68:2429:-218.803,-20.47,0	0/1:124:54,70:54:1936:70:2504:-188.285,0,-60.7072	0/1:137:64,73:64:2300:73:2597:-192.567,0,-42.5777	1/1:94:0,94:0:0:94:3364:-302.878,-28.2968,0	0/1:132:63,69:63:2230:69:2459:-181.8,0,-43.4663	1/1:40:0,40:0:0:40:1440:-129.841,-12.0412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:67:38,29:38:1356:29:1040:-73.6963,0,-49.475	1/1:57:0,57:0:0:57:2040:-183.869,-17.1587,0	1/1:5:0,5:0:0:5:180:-16.5341,-1.50515,0	1/1:147:0,146:0:0:146:5214:-469.016,-43.9504,0	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:67:0,67:0:0:67:2382:-214.41,-20.169,0	0/1:96:42,54:42:1512:54:1931:-145.059,0,-23.8821	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:138:51,87:51:1836:87:3112:-238.707,0,-12.691	0/1:190:90,100:90:3236:100:3592:-266.148,0,-65.6052	1/1:68:8,60:8:284:60:2140:-178.36,-5.96219,0	1/1:65:0,65:0:0:65:2300:-207.259,-19.567,0	0/1:148:81,67:81:2904:67:2392:-170.895,0,-69.731	1/1:145:0,145:0:0:145:5180:-466.143,-43.6494,0	0/1:34:13,21:13:468:21:752:-57.7712,0,-14.6107	0/1:51:23,28:23:828:28:1000:-74.9228,0,-27.4806	0/1:50:24,26:24:860:26:932:-69.144,0,-9.95475	0/1:9:6,3:6:216:3:108:-7.3659,0,-4.9763	0/1:66:26,40:26:936:40:1436:-109.668,0,-27.0383	0/1:91:56,35:56:1997:35:1248:-85.2311,0,-79.3096	1/1:121:0,121:0:0:121:4298:-386.659,-36.4246,0	0/1:152:83,69:83:2976:69:2465:-176.344,0,-66.4766	1/1:56:1,55:1:36:55:1960:-174.483,-14.8683,0	1/1:116:0,115:0:0:115:4117:-370.241,-34.6185,0	1/1:9:1,8:1:32:8:288:-24.2937,-0.735585,0	1/1:71:1,70:1:36:70:2508:-223.965,-19.3838,0	0/1:87:24,63:24:845:63:2252:-176.729,0,-17.5953	0/1:229:107,121:107:3820:121:4335:-321.293,0,-77.3312	0/1:59:40,19:40:1432:19:672:-43.0176,0,-37.1104	1/1:98:0,98:0:0:98:3524:-317.289,-29.5009,0	0/1:67:30,37:30:1076:37:1313:-98.29,0,-18.8552	0/1:172:81,91:81:2897:91:3260:-241.814,0,-54.6198	1/1:36:0,36:0:0:36:1290:-116.375,-10.8371,0	1/1:74:0,74:0:0:74:2648:-238.478,-22.2762,0	1/1:81:0,81:0:0:81:2894:-260.356,-24.3834,0	0/1:42:19,23:19:684:23:820:-61.4793,0,-22.1701	0/1:42:24,18:24:860:18:644:-45.6179,0,-30.5111	0/1:80:55,25:55:1976:25:896:-56.878,0,-45.5784	1/1:83:0,83:0:0:83:2972:-267.535,-24.9855,0	1/1:177:0,177:0:0:177:6336:-570.109,-53.2823,0
chr01	618601	.	A	T	188577	PASS	AB=0.508587;ABP=6.29209;AC=146;AF=0.784946;AN=186;AO=7795;CIGAR=1X;DP=10331;DPB=10331;DPRA=0;EPP=16929.6;EPPR=5494.66;GTI=2;LEN=1;MEANALT=1.06452;MQM=43.9905;MQMR=50.6853;NS=93;NUMALT=1;ODDS=1.71611;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277817;QR=90369;RO=2529;RPL=4298;RPP=181.743;RPPR=203.319;RPR=3497;RUN=1;SAF=4298;SAP=181.743;SAR=3497;SRF=1506;SRP=203.319;SRR=1023;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54:0:0:54:1940:-163.314,-16.2556,0	1/1:69:1,68:1:36:68:2424:-196.668,-17.1728,0	1/1:156:0,156:0:0:156:5565:-476.41,-46.9607,0	1/1:142:1,141:1:21:141:5023:-415.192,-40.6792,0	1/1:49:0,49:0:0:49:1729:-139.551,-14.7505,0	1/1:47:0,47:0:0:47:1688:-135.42,-14.1484,0	1/1:109:0,109:0:0:109:3896:-316.96,-32.8123,0	1/1:173:1,172:1:36:172:6149:-510.82,-48.9546,0	1/1:178:0,178:0:0:178:6304:-532.072,-53.5833,0	1/1:107:0,107:0:0:107:3823:-306.272,-32.2102,0	1/1:121:0,121:0:0:121:4295:-344.671,-36.4246,0	0/1:177:79,98:79:2790:98:3486:-238.605,0,-196.56	0/1:162:67,95:67:2390:95:3378:-232.547,0,-164.832	0/1:177:86,90:86:3072:90:3168:-203.84,0,-219.673	0/1:127:71,56:71:2552:56:1991:-126.951,0,-187.07	1/1:138:0,138:0:0:138:4909:-408.005,-41.5421,0	1/1:154:0,154:0:0:154:5490:-435.249,-46.3586,0	0/1:113:36,76:36:1296:76:2691:-183.597,0,-81.8664	1/1:98:0,98:0:0:98:3497:-289.143,-29.5009,0	1/1:137:1,136:1:36:136:4852:-403.796,-37.6926,0	0/1:159:84,75:84:2975:75:2680:-174.139,0,-216.794	0/1:43:30,13:30:1068:13:468:-27.0476,0,-82.4264	1/1:69:0,69:0:0:69:2460:-200.69,-20.7711,0	0/1:103:42,61:42:1508:61:2157:-135.661,0,-103.697	1/1:74:0,74:0:0:74:2617:-218.56,-22.2762,0	1/1:194:0,194:0:0:194:6925:-560.227,-58.3998,0	0/1:211:104,107:104:3736:107:3848:-255.215,0,-269.116	1/1:71:0,71:0:0:71:2529:-203.747,-21.3731,0	1/1:168:0,168:0:0:168:5974:-496.246,-50.573,0	1/1:106:3,103:3:108:103:3683:-296.442,-21.834,0	0/1:89:40,49:40:1436:49:1760:-116.278,0,-100.864	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:360:-29.7755,-3.0103,0	0/1:6:2,4:2:72:4:144:-10.1903,0,-4.57964	0/1:11:6,5:6:216:5:180:-12.3674,0,-16.0441	1/1:12:0,12:0:0:12:417:-35.1914,-3.61236,0	0/1:344:165,179:165:5913:179:6383:-411.143,0,-417.467	0/1:81:39,42:39:1404:42:1512:-97.3678,0,-99.5392	1/1:125:0,125:0:0:125:4467:-366.294,-37.6288,0	.:.:.:.:.:.:.:.	0/1:143:62,81:62:2206:81:2895:-193.853,0,-154.166	1/1:70:0,70:0:0:70:2508:-211.3,-21.0721,0	1/1:138:0,138:0:0:138:4921:-402.534,-41.5421,0	1/1:155:0,155:0:0:155:5514:-447.352,-46.6597,0	0/1:115:56,59:56:2008:59:2087:-134.421,0,-143.938	1/1:94:0,93:0:0:93:3316:-276.449,-27.9958,0	0/1:110:54,56:54:1940:56:1970:-135.691,0,-141.061	0/1:121:59,62:59:2116:62:2201:-146.316,0,-152.279	1/1:99:0,99:0:0:99:3516:-295.955,-29.802,0	0/1:129:55,74:55:1948:74:2617:-177.536,0,-134.612	1/1:98:0,98:0:0:98:3482:-290.446,-29.5009,0	1/1:5:0,5:0:0:5:180:-15.5226,-1.50515,0	0/1:92:42,50:42:1488:50:1796:-124.273,0,-105.825	1/1:46:0,46:0:0:46:1648:-137.969,-13.8474,0	1/1:10:0,10:0:0:10:360:-29.6339,-3.0103,0	1/1:124:0,124:0:0:124:4439:-372.356,-37.3277,0	1/1:40:0,40:0:0:40:1436:-118.742,-12.0412,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:17:0,17:0:0:17:612:-48.5176,-5.11751,0	1/1:66:0,66:0:0:66:2347:-187.483,-19.868,0	0/1:202:99,103:99:3540:103:3677:-232.594,0,-254.827	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.52358	0/1:133:62,71:62:2224:71:2539:-161.623,0,-158.141	0/1:151:80,71:80:2855:71:2544:-160.815,0,-206.089	1/1:65:6,59:6:207:59:2104:-158.509,-0.600056,0	1/1:58:0,58:0:0:58:2063:-170.606,-17.4597,0	0/1:131:61,70:61:2181:70:2471:-164.619,0,-154.053	1/1:174:2,172:2:72:172:6176:-533.75,-45.637,0	0/1:74:40,34:40:1432:34:1220:-80.1308,0,-103.932	0/1:62:35,27:35:1256:27:959:-62.6983,0,-94.1233	0/1:154:85,69:85:3040:69:2467:-148.978,0,-220.779	0/1:39:22,17:22:792:17:612:-38.6611,0,-58.8335	0/1:100:52,48:52:1835:48:1720:-113.222,0,-134.12	0/1:88:44,44:44:1568:44:1580:-107.428,0,-114.135	1/1:194:0,194:0:0:194:6934:-585.936,-58.3998,0	0/1:152:73,79:73:2616:79:2808:-188.139,0,-187.941	1/1:112:0,112:0:0:112:4013:-330.828,-33.7154,0	1/1:136:0,136:0:0:136:4845:-400.412,-40.9401,0	1/1:12:0,12:0:0:12:432:-35.6924,-3.61236,0	1/1:113:0,113:0:0:113:4047:-334.929,-34.0164,0	0/1:128:51,77:51:1828:77:2755:-186.062,0,-124.459	0/1:203:102,101:102:3659:101:3599:-239.557,0,-265.333	0/1:157:87,70:87:3107:70:2453:-149.563,0,-228.04	1/1:160:0,160:0:0:160:5711:-466.608,-48.1648,0	0/1:145:67,78:67:2384:78:2766:-179.14,0,-167.565	0/1:263:120,143:120:4259:143:5077:-335.125,0,-300.784	1/1:58:0,57:0:0:57:2018:-164.524,-17.1587,0	1/1:127:0,126:0:0:126:4506:-367.602,-37.9298,0	1/1:126:0,126:0:0:126:4458:-364.642,-37.9298,0	0/1:106:48,56:48:1728:56:1987:-132.039,0,-122.173	0/1:184:118,66:118:4211:66:2326:-134.015,0,-319.216	0/1:134:86,48:86:3096:48:1720:-98.8854,0,-234.348	1/1:104:0,104:0:0:104:3694:-311.286,-31.3071,0	1/1:232:0,232:0:0:232:8289:-672.716,-69.839,0
chr01	745636	.	C	T	42906.1	PASS	AB=0.555956;ABP=123.788;AC=40;AF=0.212766;AN=188;AO=2479;CIGAR=1X;DP=8450;DPB=8450;DPRA=1.53326;EPP=5386.09;EPPR=12964.5;GTI=6;LEN=1;MEANALT=1.04444;MQM=59.8705;MQMR=43.2305;NS=94;NUMALT=1;ODDS=1.38538;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88669;QR=213853;RO=5969;RPL=0;RPP=5386.09;RPPR=12964.5;RPR=2479;RUN=1;SAF=2479;SAP=5386.09;SAR=0;SRF=5969;SRP=12964.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:53,0:53:1908:0:0:0,-15.9546,-167.866	0/0:76:76,0:76:2724:0:0:0,-22.8783,-240.522	0/0:113:112,1:112:4020:1:36:0,-30.4181,-350.787	0/0:184:184,0:184:6574:0:0:0,-55.3895,-575.177	0/0:66:66,0:66:2364:0:0:0,-19.868,-207.349	0/0:33:33,0:33:1188:0:0:0,-9.93399,-105.245	0/0:99:99,0:99:3541:0:0:0,-29.802,-311.955	0/0:67:67,0:67:2396:0:0:0,-20.169,-211.122	0/0:79:79,0:79:2815:0:0:0,-23.7814,-248.953	0/0:102:102,0:102:3648:0:0:0,-30.7051,-319.985	0/0:52:52,0:52:1851:0:0:0,-15.6536,-163.599	0/1:104:53,51:53:1904:51:1828:-133.492,0,-136.485	0/1:92:41,51:41:1472:51:1836:-137.819,0,-102.482	0/1:93:39,54:39:1391:54:1932:-146.161,0,-94.7441	0/1:79:41,38:41:1468:38:1364:-99.2793,0,-105.555	0/0:55:55,0:55:1972:0:0:0,-16.5566,-171.08	0/0:41:41,0:41:1463:0:0:0,-12.3422,-129.758	0/1:38:26,12:26:936:12:432:-27.7821,0,-70.712	0/0:32:32,0:32:1152:0:0:0,-9.63296,-98.8949	0/0:172:172,0:172:6153:0:0:0,-51.7772,-540.674	0/1:170:75,95:75:2680:95:3385:-253.686,0,-183.41	0/1:172:40,132:40:1440:132:4730:-374.068,0,-74.2948	0/0:148:148,0:148:5305:0:0:0,-44.5524,-465.656	0/1:73:25,48:25:892:48:1716:-132.744,0,-56.3265	0/0:44:44,0:44:1580:0:0:0,-13.2453,-139.074	0/0:196:196,0:196:7020:0:0:0,-59.0019,-612.97	0/1:216:78,138:78:2788:138:4929:-378.727,0,-177.71	0/0:33:33,0:33:1184:0:0:0,-9.93399,-103.07	0/0:218:218,0:218:7824:0:0:0,-65.6245,-681.924	0/0:129:127,1:127:4533:1:36:0,-35.2164,-393.579	0/1:132:45,87:45:1608:87:3071:-236.88,0,-102.321	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.4364	0/0:15:15,0:15:536:0:0:0,-4.51545,-47.548	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.69702	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.71863	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.90114	0/1:170:86,84:86:3088:84:3009:-219.844,0,-218.183	0/1:140:66,74:66:2372:74:2649:-196.506,0,-167.01	0/0:51:51,0:51:1823:0:0:0,-15.3525,-159.941	0/1:5:2,3:2:72:3:108:-8.57002,0,-4.67152	0/1:183:96,87:96:3444:87:3124:-226.294,0,-247.493	0/0:31:31,0:31:1112:0:0:0,-9.33193,-97.794	0/0:116:116,0:116:4160:0:0:0,-34.9195,-363.897	0/0:65:65,0:65:2340:0:0:0,-19.5669,-204.296	0/1:45:20,25:20:720:25:900:-67.7747,0,-50.2254	0/0:98:98,0:98:3516:0:0:0,-29.5009,-306.578	0/1:107:43,64:43:1544:64:2285:-173.696,0,-104.205	0/1:153:83,70:83:2968:70:2496:-178.832,0,-215.115	0/0:30:30,0:30:1080:0:0:0,-9.0309,-94.7923	0/1:110:42,68:42:1512:68:2421:-185.018,0,-100.004	0/0:138:138,0:138:4936:0:0:0,-41.5421,-428.881	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.0412	0/1:254:113,141:113:4021:141:5037:-376.454,0,-277.416	0/0:60:60,0:60:2152:0:0:0,-18.0618,-188.394	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5056	0/0:145:145,0:145:5208:0:0:0,-43.6493,-457.01	0/0:53:53,0:53:1904:0:0:0,-15.9546,-167.74	0/0:16:16,0:16:572:0:0:0,-4.81648,-49.9336	0/0:14:14,0:14:504:0:0:0,-4.21442,-43.703	0/0:88:88,0:88:3156:0:0:0,-26.4906,-277.819	0/1:120:66,54:66:2372:54:1936:-138.389,0,-172.083	0/1:9:7,2:7:252:2:72:-4.12745,0,-19.8252	0/1:220:128,92:128:4573:92:3293:-230.357,0,-333.452	0/1:136:53,83:53:1900:83:2946:-224.432,0,-125.89	0/0:52:48,4:48:1705:4:129:0,-3.7259,-138.713	0/0:73:73,0:73:2620:0:0:0,-21.9752,-230.799	0/1:192:86,106:86:3088:106:3808:-285.115,0,-212.004	0/0:129:126,3:126:4524:3:108:0,-28.7577,-387.816	0/1:41:28,13:28:1008:13:468:-30.1174,0,-75.4251	0/0:86:86,0:86:3084:0:0:0,-25.8886,-271.393	0/1:46:23,22:23:824:22:792:-57.6894,0,-58.2697	0/1:23:14,9:14:504:9:320:-22.2187,0,-37.303	0/1:143:53,90:53:1904:90:3225:-246.497,0,-124.425	0/1:103:55,48:55:1964:48:1724:-124.439,0,-142.88	0/0:173:173,0:173:6177:0:0:0,-52.0782,-539.746	0/1:244:100,144:100:3588:144:5161:-391.173,0,-241.026	0/0:59:59,0:59:2105:0:0:0,-17.7608,-185.834	0/0:25:25,0:25:896:0:0:0,-7.52575,-79.543	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.3828	0/0:77:76,1:76:2709:1:36:0,-19.581,-234.173	0/1:96:32,64:32:1152:64:2285:-176.635,0,-72.8496	0/1:182:55,127:55:1972:127:4556:-355.414,0,-118.184	0/1:59:28,31:28:1004:31:1112:-82.6306,0,-70.0244	0/1:104:43,61:43:1548:61:2177:-164.884,0,-105.378	0/1:50:21,29:21:756:29:1040:-78.8595,0,-51.3589	0/1:125:60,65:60:2147:65:2336:-172.864,0,-150.517	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.1476	0/0:62:62,0:62:2228:0:0:0,-18.6639,-196.778	0/0:78:78,0:78:2804:0:0:0,-23.4803,-247.476	0/1:36:16,20:16:572:20:720:-54.2917,0,-39.926	0/1:98:66,32:66:2376:32:1148:-74.1276,0,-179.458	0/1:74:20,54:20:716:54:1917:-150.526,0,-41.097	0/0:115:115,0:115:4109:0:0:0,-34.6184,-359.207	0/0:123:123,0:123:4410:0:0:0,-37.0267,-385.475
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chr01	745712	.	G	T	30547	PASS	AB=0.538462;ABP=46.9409;AC=29;AF=0.154255;AN=188;AO=1854;CIGAR=1X;DP=7099;DPB=7099;DPRA=2.04553;EPP=4028.92;EPPR=11388;GTI=9;LEN=1;MEANALT=1;MQM=59.2276;MQMR=59.926;NS=94;NUMALT=1;ODDS=0.673736;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65518;QR=185712;RO=5243;RPL=0;RPP=4028.92;RPPR=11388;RPR=1854;RUN=1;SAF=0;SAP=4028.92;SAR=1854;SRF=0;SRP=11388;SRR=5243;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:50:50,0:50:1772:0:0:0,-15.0515,-159.763	0/0:124:124,0:124:4432:0:0:0,-37.3277,-399.016	0/0:166:166,0:166:5875:0:0:0,-49.971,-528.866	0/0:43:43,0:43:1523:0:0:0,-12.9443,-136.992	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.5	0/0:51:51,0:51:1797:0:0:0,-15.3525,-162.01	0/0:82:81,1:81:2888:1:36:0,-21.0862,-256.551	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.043	0/0:106:106,0:106:3750:0:0:0,-31.9092,-337.674	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:111:58,53:58:2056:53:1888:-136.713,0,-151.895	0/1:68:35,33:35:1245:33:1176:-85.6502,0,-91.8827	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.46	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/0:33:32,1:32:1136:1:36:0,-6.41298,-99.0279	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/0:130:130,0:130:4583:0:0:0,-39.1339,-412.637	0/1:138:61,77:61:2140:77:2736:-204.93,0,-151.302	0/1:72:17,55:17:597:55:1943:-152.621,0,-32.382	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/1:122:49,73:49:1723:73:2596:-197.121,0,-118.629	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:193:191,2:191:6691:2:68:0,-51.6411,-595.817	0/1:114:49,65:49:1744:65:2300:-172.923,0,-122.927	0/0:29:29,0:29:1012:0:0:0,-8.72987,-91.3885	0/0:168:168,0:168:5948:0:0:0,-50.573,-535.431	0/0:105:105,0:105:3672:0:0:0,-31.6081,-330.438	0/1:76:23,53:23:811:53:1875:-145.492,0,-50.4092	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.0298	0/1:191:93,98:93:3290:98:3483:-256.102,0,-238.822	0/1:157:67,90:67:2361:90:3180:-239.106,0,-165.486	0/0:37:37,0:37:1304:0:0:0,-11.1381,-117.661	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:107:45,62:45:1612:62:2216:-167.414,0,-113.137	0/0:29:29,0:29:1019:0:0:0,-8.72987,-92.0213	0/0:110:110,0:110:3915:0:0:0,-33.1133,-352.545	0/0:73:73,0:73:2554:0:0:0,-21.9752,-230.109	0/1:81:39,42:39:1400:42:1468:-107.677,0,-101.916	0/0:43:42,1:42:1458:1:36:0,-9.34601,-127.909	0/0:73:72,1:72:2564:1:36:0,-18.4542,-227.454	0/1:209:84,125:84:2977:125:4412:-334.31,0,-205.247	0/0:103:102,1:102:3613:1:36:0,-27.4078,-321.462	0/1:121:59,62:59:2099:62:2199:-161.468,0,-152.754	0/0:199:197,0:197:6937:0:0:0,-59.3029,-624.035	0/0:18:18,0:18:627:0:0:0,-5.41854,-56.7544	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:110:110,0:110:3862:0:0:0,-33.1133,-347.621	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:25:24,1:24:839:1:36:0,-3.92747,-72.229	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/1:143:71,72:71:2536:72:2533:-185.119,0,-185.444	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:266:136,130:136:4821:130:4569:-330.287,0,-353.972	0/1:110:49,61:49:1739:61:2155:-160.765,0,-123.68	0/0:68:66,2:66:2352:2:72:0,-13.6333,-205.103	0/0:57:56,1:56:1979:1:32:0,-13.9594,-175.185	0/1:132:55,77:55:1967:77:2717:-203.727,0,-137.568	0/0:44:44,0:44:1544:0:0:0,-13.2453,-139.252	0/1:18:8,10:8:284:10:348:-26.2323,0,-20.4848	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.677	0/1:103:47,56:47:1650:56:1990:-148.296,0,-117.78	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.3909	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:108:108,0:108:3813:0:0:0,-32.5112,-343.348	0/1:225:115,110:115:4075:110:3887:-281.886,0,-299.206	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:96:96,0:96:3375:0:0:0,-28.8989,-303.968	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.453	0/1:234:99,135:99:3539:135:4722:-353.449,0,-248.278	0/1:117:60,57:60:2132:57:2014:-146.257,0,-156.925	0/1:86:45,41:45:1612:41:1450:-104.906,0,-119.481	0/1:105:53,52:53:1861:52:1818:-132.246,0,-136.159	0/1:127:70,57:70:2499:57:2015:-143.378,0,-186.932	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.554	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:34:15,19:15:536:19:668:-50.206,0,-38.3398	0/1:78:48,30:48:1698:30:1060:-72.1883,0,-129.587	0/1:58:16,42:16:572:42:1496:-117.442,0,-34.3537	0/0:57:57,0:57:2005:0:0:0,-17.1587,-180.722	0/0:106:104,2:104:3671:2:72:0,-25.0725,-323.738
chr01	897054	.	C	G	169379	PASS	AB=0.521007;ABP=20.9827;AC=147;AF=0.790323;AN=186;AO=7947;CIGAR=1X;DP=10214;DPB=10214;DPRA=0;EPP=17095.1;EPPR=4817.63;GTI=0;LEN=1;MEANALT=1.05376;MQM=56.6859;MQMR=59.893;NS=93;NUMALT=1;ODDS=1.42355;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=283909;QR=80554;RO=2261;RPL=19;RPP=17095.1;RPPR=4826.23;RPR=7928;RUN=1;SAF=7947;SAP=17259.7;SAR=0;SRF=2260;SRP=4904.03;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,59:0:0:59:2104:-188.924,-17.7608,0	1/1:223:0,223:0:0:223:7982:-717.002,-67.1297,0	1/1:187:0,187:0:0:187:6672:-598.635,-56.2926,0	1/1:226:0,225:0:0:225:8025:-720.975,-67.7318,0	1/1:103:0,103:0:0:103:3674:-330.359,-31.0061,0	1/1:83:0,81:0:0:81:2887:-259.172,-24.3834,0	1/1:119:0,119:0:0:119:4269:-383.819,-35.8226,0	1/1:273:1,272:1:36:272:9683:-865.82,-78.5829,0	1/1:127:0,127:0:0:127:4537:-407.855,-38.2308,0	1/1:69:0,69:0:0:69:2472:-222.569,-20.7711,0	1/1:48:0,48:0:0:48:1724:-155.251,-14.4494,0	0/1:71:35,36:35:1247:36:1287:-94.4862,0,-91.16	0/1:76:41,35:41:1461:35:1248:-89.0737,0,-108.906	0/1:59:31,28:31:1095:28:1008:-73.2054,0,-81.0983	0/1:79:39,40:39:1388:40:1436:-105.419,0,-101.438	1/1:42:0,42:0:0:42:1500:-135.11,-12.6433,0	1/1:92:0,92:0:0:92:3258:-292.762,-27.6948,0	0/1:85:39,46:39:1400:46:1628:-120.832,0,-100.712	1/1:43:0,43:0:0:43:1548:-138.827,-12.9443,0	1/1:260:1,259:1:36:259:9236:-826.374,-74.6695,0	0/1:163:77,86:77:2715:86:3084:-228.06,0,-195.297	0/1:67:47,20:47:1672:20:711:-44.1466,0,-130.598	1/1:118:0,118:0:0:118:4212:-378.952,-35.5215,0	0/1:180:87,93:87:3082:93:3332:-245.339,0,-222.933	1/1:83:0,83:0:0:83:2988:-267.816,-24.9855,0	1/1:401:1,400:1:36:400:14267:-1278.55,-117.115,0	0/1:241:121,120:121:4316:120:4286:-312.396,0,-316.068	1/1:43:0,43:0:0:43:1544:-138.981,-12.9443,0	1/1:224:0,224:0:0:224:8044:-723.609,-67.4307,0	1/1:120:0,120:0:0:120:4273:-384.088,-36.1236,0	0/1:164:86,78:86:3063:78:2777:-200.067,0,-226.425	1/1:4:0,4:0:0:4:144:-13.2908,-1.20412,0	1/1:15:0,15:0:0:15:540:-48.8789,-4.51545,0	.:.:.:.:.:.:.:.	0/1:3:2,1:2:68:1:36:-2.69148,0,-5.55462	1/1:2:0,2:0:0:2:72:-6.7215,-0.60206,0	0/1:187:86,101:86:3079:101:3636:-270.991,0,-221.034	0/1:128:50,78:50:1788:78:2796:-212.791,0,-122.671	1/1:58:0,58:0:0:58:2071:-185.262,-17.4597,0	0/1:8:2,6:2:72:6:212:-17.0081,0,-4.42848	0/1:184:91,93:91:3219:93:3303:-240.831,0,-234.509	1/1:30:0,30:0:0:30:1076:-97.077,-9.0309,0	1/1:93:0,93:0:0:93:3322:-298.859,-27.9958,0	1/1:89:0,89:0:0:89:3196:-287.539,-26.7917,0	0/1:74:40,34:40:1428:34:1216:-87.3775,0,-106.541	1/1:75:0,75:0:0:75:2668:-240.263,-22.5773,0	0/1:171:84,87:84:2983:87:3120:-228.532,0,-217.226	0/1:183:74,109:74:2644:109:3895:-295.337,0,-183.118	1/1:159:0,159:0:0:159:5694:-511.213,-47.8638,0	0/1:193:87,106:87:3088:106:3770:-281.209,0,-220.04	1/1:175:0,175:0:0:175:6252:-562.626,-52.6803,0	1/1:13:0,13:0:0:13:468:-42.4096,-3.91339,0	0/1:136:62,74:62:2219:74:2651:-197.373,0,-159.034	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:15:0,15:0:0:15:525:-47.5252,-4.51545,0	1/1:132:0,132:0:0:132:4724:-424.877,-39.736,0	1/1:40:0,40:0:0:40:1428:-128.469,-12.0412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:26:0,26:0:0:26:932:-84.1985,-7.82678,0	1/1:118:2,116:2:72:116:4125:-363.734,-28.6848,0	0/1:74:29,45:29:1040:45:1620:-123.304,0,-71.6372	0/1:6:3,3:3:108:3:108:-8.26774,0,-8.26899	0/1:251:101,150:101:3616:150:5363:-406.886,0,-250.085	0/1:314:125,189:125:4472:189:6751:-512.437,0,-308.081	1/1:98:4,94:4:144:94:3368:-289.327,-16.1873,0	1/1:123:0,122:0:0:122:4327:-388.98,-36.7257,0	0/1:181:85,96:85:3024:96:3440:-255.039,0,-217.868	1/1:144:2,141:2:63:141:5035:-447.234,-37.3157,0	1/1:12:0,12:0:0:12:424:-38.4796,-3.61236,0	1/1:86:1,85:1:36:85:3020:-266.353,-22.2903,0	0/1:92:48,44:48:1703:44:1575:-114.258,0,-125.86	0/1:18:9,9:9:311:9:324:-24.0837,0,-22.9052	0/1:89:42,47:42:1500:47:1684:-124.529,0,-108.503	0/1:68:25,43:25:888:43:1534:-117.516,0,-59.6627	1/1:154:0,154:0:0:154:5470:-491.78,-46.3586,0	0/1:170:93,77:93:3332:77:2768:-198.042,0,-248.912	1/1:126:2,124:2:72:124:4436:-391.776,-31.0931,0	1/1:173:1,172:1:36:172:6168:-550.408,-48.4799,0	1/1:7:0,7:0:0:7:248:-22.6425,-2.10721,0	1/1:141:1,140:1:36:140:5009:-446.882,-38.847,0	0/1:136:73,62:73:2584:62:2189:-155.78,0,-191.81	0/1:230:106,124:106:3771:124:4419:-328.492,0,-270.265	0/1:87:46,41:46:1641:41:1446:-103.206,0,-121.787	0/1:75:41,34:41:1476:34:1224:-87.8589,0,-110.559	0/1:119:67,52:67:2400:52:1860:-131.456,0,-180.433	0/1:168:88,80:88:3139:80:2868:-207.413,0,-232.162	1/1:52:0,52:0:0:52:1859:-166.755,-15.6536,0	1/1:93:0,93:0:0:93:3340:-300.093,-27.9958,0	1/1:75:0,75:0:0:75:2677:-240.473,-22.5773,0	0/1:29:13,16:13:451:16:576:-43.4203,0,-32.1899	0/1:53:22,31:22:788:31:1097:-83.038,0,-55.2853	0/1:77:48,29:48:1716:29:1044:-71.0838,0,-131.546	1/1:103:0,103:0:0:103:3665:-329.877,-31.0061,0	1/1:115:0,115:0:0:115:4113:-370.063,-34.6185,0
chr01	959496	.	A	G	164712	PASS	AB=0.422861;ABP=251.254;AC=146;AF=0.776596;AN=188;AO=6336;CIGAR=1X;DP=9129;DPB=9129;DPRA=49.5924;EPP=13718.1;EPPR=6020.21;GTI=8;LEN=1;MEANALT=1.06522;MQM=59.9806;MQMR=59.9989;NS=94;NUMALT=1;ODDS=0.485446;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224160;QR=99607;RO=2787;RPL=4082;RPP=1148.24;RPPR=329.167;RPR=2254;RUN=1;SAF=4077;SAP=1135.74;SAR=2259;SRF=1715;SRP=325.146;SRR=1072;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:52:0,52:0:0:52:1841:-165.968,-15.6536,0	1/1:107:0,107:0:0:107:3820:-343.97,-32.2102,0	1/1:368:1,366:1:36:366:12960:-1162.63,-107.24,0	1/1:51:0,51:0:0:51:1789:-161.288,-15.3525,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:120:0,120:0:0:120:4241:-381.873,-36.1236,0	1/1:77:0,77:0:0:77:2740:-246.841,-23.1793,0	1/1:95:0,95:0:0:95:3365:-303.067,-28.5979,0	1/1:116:0,115:0:0:115:4081:-367.12,-34.6185,0	1/1:75:0,75:0:0:75:2641:-237.937,-22.5773,0	0/1:102:60,42:60:2144:42:1487:-103.419,0,-162.523	0/1:79:40,39:40:1432:39:1386:-101.257,0,-105.396	0/1:42:19,23:19:680:23:815:-61.0275,0,-48.8859	0/1:126:68,58:68:2425:58:2059:-147.651,0,-180.574	1/1:47:0,47:0:0:47:1666:-150.226,-14.1484,0	1/1:28:0,27:0:0:27:964:-86.8616,-8.12781,0	0/1:32:19,13:19:680:13:468:-32.8267,0,-51.8962	1/1:24:0,24:0:0:24:834:-75.3731,-7.22472,0	1/1:229:0,229:0:0:229:8097:-728.758,-68.9359,0	0/1:107:58,49:58:2072:49:1753:-125.844,0,-154.541	0/1:251:204,47:204:7303:47:1667:-74.7581,0,-581.761	1/1:109:0,109:0:0:109:3860:-347.588,-32.8123,0	0/1:36:27,9:27:968:9:324:-18.6688,0,-76.6003	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:264:0,264:0:0:264:9325:-839.228,-79.4719,0	0/1:101:58,43:58:2080:43:1539:-108.398,0,-157.066	1/1:28:0,28:0:0:28:982:-88.6909,-8.42884,0	1/1:309:1,308:1:36:308:10804:-968.686,-89.42,0	1/1:74:0,74:0:0:74:2637:-237.576,-22.2762,0	0/1:171:80,91:80:2848:91:3222:-238.727,0,-205.083	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:307:155,152:155:5524:152:5351:-389.313,0,-404.87	0/1:49:30,19:30:1076:19:665:-45.4223,0,-82.4024	1/1:41:0,41:0:0:41:1451:-130.885,-12.3422,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:109:61,48:61:2192:48:1716:-121.913,0,-164.732	1/1:18:0,18:0:0:18:639:-57.8391,-5.41854,0	1/1:70:0,70:0:0:70:2494:-224.713,-21.0721,0	1/1:64:0,64:0:0:64:2244:-202.222,-19.2659,0	0/1:102:55,47:55:1963:47:1653:-118.351,0,-146.24	1/1:121:0,120:0:0:120:4197:-377.552,-36.1236,0	0/1:78:39,39:39:1404:39:1363:-99.4845,0,-103.179	0/1:276:149,127:149:5308:127:4488:-320.573,0,-394.771	1/1:97:0,97:0:0:97:3428:-308.738,-29.1999,0	0/1:212:111,101:111:3968:101:3564:-257.152,0,-293.493	1/1:168:0,168:0:0:168:5946:-535.253,-50.573,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:85:55,30:55:1967:30:1072:-71.2049,0,-151.717	1/1:122:1,121:1:36:121:4250:-379.085,-33.1274,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:97:0,97:0:0:97:3408:-306.934,-29.1999,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:17:0,17:0:0:17:599:-54.2381,-5.11751,0	1/1:51:0,51:0:0:51:1803:-162.549,-15.3525,0	0/1:137:80,57:80:2876:57:2040:-142.631,0,-217.835	0/1:9:3,6:3:108:6:208:-16.3498,0,-7.3659	0/1:319:183,136:183:6513:136:4756:-332.173,0,-490.226	0/1:276:178,98:178:6372:98:3476:-229.97,0,-490.486	1/1:36:2,34:2:72:34:1209:-102.277,-4.00036,0	1/1:110:0,109:0:0:109:3868:-347.959,-32.8123,0	0/1:208:114,94:114:4080:94:3327:-237.036,0,-304.772	1/1:190:5,185:5:180:185:6575:-575.271,-40.6436,0	1/1:17:0,17:0:0:17:589:-53.3333,-5.11751,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:64:33,31:33:1176:31:1104:-80.4047,0,-86.8818	0/1:46:19,27:19:684:27:950:-71.9657,0,-48.0429	0/1:52:28,24:28:991:24:838:-60.0811,0,-73.85	0/1:76:42,34:42:1489:34:1224:-87.5888,0,-111.424	1/1:97:0,96:0:0:96:3383:-304.325,-28.8989,0	0/1:253:145,108:145:5180:108:3848:-270.356,0,-390.181	1/1:64:0,64:0:0:64:2273:-204.831,-19.2659,0	1/1:69:0,69:0:0:69:2456:-221.295,-20.7711,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	1/1:46:1,45:1:36:45:1601:-140.781,-10.2491,0	0/1:88:61,27:61:2180:27:960:-60.2256,0,-169.976	0/1:341:197,144:197:7052:144:5130:-359.193,0,-532.09	0/1:109:67,42:67:2396:42:1456:-98.5194,0,-183.085	0/1:103:55,48:55:1968:48:1693:-121.649,0,-146.389	0/1:70:40,30:40:1415:30:1058:-74.4575,0,-106.574	0/1:186:101,85:101:3597:85:2987:-213.074,0,-267.945	1/1:23:0,23:0:0:23:811:-73.31,-6.92369,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:59:0,59:0:0:59:2090:-188.369,-17.7608,0	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:46:28,18:28:1004:18:631:-43.2111,0,-76.8285	0/1:133:102,31:102:3664:31:1100:-59.2733,0,-289.926	1/1:198:0,198:0:0:198:7036:-633.309,-59.6039,0	1/1:170:0,170:0:0:170:6000:-540.114,-51.1751,0
chr01	959555	.	G	A	102594	PASS	AB=0.433568;ABP=133.416;AC=146;AF=0.784946;AN=186;AO=4922;CIGAR=1X;DP=6865;DPB=6865;DPRA=74.6087;EPP=10691;EPPR=4217.84;GTI=6;LEN=1;MEANALT=1.02174;MQM=59.9805;MQMR=59.9933;NS=93;NUMALT=1;ODDS=0.48675;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175952;QR=69277;RO=1941;RPL=4922;RPP=10691;RPPR=4217.84;RPR=0;RUN=1;SAF=0;SAP=10691;SAR=4922;SRF=0;SRP=4217.84;SRR=1941;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1140:-102.892,-9.63296,0	1/1:53:0,53:0:0:53:1888:-170.198,-15.9546,0	1/1:197:0,197:0:0:197:7072:-636.538,-59.3029,0	1/1:208:0,208:0:0:208:7464:-671.801,-62.6142,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	1/1:57:0,57:0:0:57:2042:-184.052,-17.1587,0	1/1:105:1,104:1:36:104:3701:-329.658,-28.0099,0	1/1:49:0,49:0:0:49:1748:-157.604,-14.7505,0	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:82:47,35:47:1668:35:1243:-87.4894,0,-125.723	0/1:74:35,39:35:1260:39:1400:-104.023,0,-91.4293	0/1:89:57,32:57:2023:32:1152:-77.1985,0,-155.551	0/1:55:29,26:29:1044:26:914:-66.018,0,-77.7182	1/1:44:0,44:0:0:44:1559:-140.601,-13.2453,0	1/1:51:1,50:1:36:50:1788:-157.604,-11.7543,0	0/1:26:12,14:12:428:14:504:-37.8713,0,-31.032	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:138:0,138:0:0:138:4948:-445.469,-41.5421,0	0/1:133:90,43:90:3213:43:1536:-98.4961,0,-249.354	0/1:122:91,31:91:3249:31:1100:-62.5846,0,-255.904	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	0/1:32:25,7:25:896:7:251:-13.3049,0,-71.3274	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:145:0,145:0:0:145:5168:-465.263,-43.6494,0	0/1:112:63,49:63:2256:49:1760:-124.969,0,-169.588	1/1:30:1,29:1:36:29:1044:-90.6765,-5.43263,0	1/1:175:0,175:0:0:175:6252:-562.777,-52.6803,0	1/1:121:0,121:0:0:121:4322:-389.157,-36.4246,0	0/1:102:47,55:47:1676:55:1964:-146.33,0,-120.422	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:146:73,73:73:2600:73:2612:-191.378,0,-190.296	0/1:75:43,32:43:1532:32:1148:-81.0526,0,-115.596	1/1:51:0,51:0:0:51:1811:-163.271,-15.3525,0	.:.:.:.:.:.:.:.	0/1:157:81,76:81:2888:76:2693:-195.351,0,-212.895	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:124:0,124:0:0:124:4417:-397.703,-37.3277,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:41:22,19:22:780:19:684:-49.5481,0,-58.1808	1/1:62:0,62:0:0:62:2228:-200.766,-18.6639,0	0/1:128:74,54:74:2633:54:1940:-136.344,0,-198.684	0/1:94:51,43:51:1804:43:1540:-110.596,0,-134.345	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:130:63,67:63:2268:67:2404:-177.483,0,-165.248	1/1:90:0,90:0:0:90:3216:-289.663,-27.0927,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:107:58,49:58:2076:49:1741:-124.762,0,-154.9	1/1:74:0,74:0:0:74:2653:-239.015,-22.2762,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:87:0,87:0:0:87:3098:-279.029,-26.1896,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:90:53,37:53:1892:37:1324:-92.3694,0,-143.466	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:174:97,76:97:3472:76:2712:-192.034,0,-260.402	0/1:163:111,52:111:3959:52:1864:-118.972,0,-307.434	1/1:70:6,64:6:216:64:2277:-185.4,-1.28159,0	1/1:50:0,50:0:0:50:1774:-159.942,-15.0515,0	0/1:125:66,59:66:2356:59:2108:-152.361,0,-174.67	1/1:111:5,106:5:180:106:3792:-324.919,-16.8623,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	0/1:27:17,10:17:608:10:356:-24.2534,0,-46.9242	0/1:27:10,17:10:356:17:612:-47.2856,0,-24.2534	0/1:84:49,35:49:1741:35:1245:-87.0662,0,-131.686	0/1:65:32,33:32:1125:33:1184:-87.3014,0,-81.9891	1/1:100:1,99:1:36:99:3543:-315.481,-26.5047,0	0/1:142:79,63:79:2836:63:2252:-160.197,0,-212.732	1/1:99:0,99:0:0:99:3548:-319.528,-29.802,0	1/1:88:0,88:0:0:88:3141:-282.914,-26.4906,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:111:0,111:0:0:111:3964:-356.946,-33.4143,0	0/1:182:104,77:104:3689:77:2764:-194.155,0,-277.368	0/1:166:109,57:109:3888:57:2030:-132.999,0,-300.145	0/1:48:30,18:30:1080:18:639:-43.3888,0,-83.0638	0/1:56:21,35:21:752:35:1260:-96.8478,0,-51.1201	0/1:37:18,19:18:631:19:671:-49.5777,0,-45.9776	0/1:99:50,49:50:1787:49:1756:-128.522,0,-131.31	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:78:0,78:0:0:78:2787:-251.07,-23.4803,0	0/1:41:17,24:17:612:24:841:-63.6631,0,-43.0712	0/1:105:57,48:57:2043:48:1715:-123.027,0,-152.533	0/1:56:40,16:40:1440:16:576:-35.3173,0,-113.04	1/1:123:0,123:0:0:123:4397:-395.902,-37.0267,0	1/1:75:0,75:0:0:75:2675:-240.995,-22.5773,0
chr01	982746	.	T	C	134544	PASS	AB=0.484048;ABP=11.4622;AC=147;AF=0.781915;AN=188;AO=6393;CIGAR=1X;DP=8381;DPB=8381;DPRA=45.0484;EPP=13885.2;EPPR=4317.73;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9592;MQMR=59.9688;NS=94;NUMALT=1;ODDS=0.0279198;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227130;QR=70267;RO=1987;RPL=3;RPP=13859.2;RPPR=4309.04;RPR=6390;RUN=1;SAF=3;SAP=13859.2;SAR=6390;SRF=1;SRP=4309.04;SRR=1986;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:150:0,150:0:0:150:5362:-482.712,-45.1545,0	1/1:106:0,106:0:0:106:3760:-337.972,-31.9092,0	1/1:158:1,157:1:36:157:5532:-494.386,-43.9645,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:83:0,83:0:0:83:2962:-266.812,-24.9855,0	1/1:77:0,77:0:0:77:2760:-248.637,-23.1793,0	1/1:231:3,228:3:108:228:8057:-715.077,-59.4628,0	1/1:74:0,74:0:0:74:2606:-234.786,-22.2762,0	1/1:95:0,95:0:0:95:3382:-304.594,-28.5979,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:74:42,32:42:1496:32:1113:-78.1986,0,-112.658	0/1:53:21,32:21:748:32:1152:-88.0356,0,-51.6907	0/1:58:26,32:26:899:32:1124:-84.0055,0,-63.6936	0/1:51:30,21:30:1063:21:748:-52.2928,0,-80.5833	1/1:56:0,56:0:0:56:1976:-178.112,-16.8577,0	1/1:57:0,57:0:0:57:2003:-180.543,-17.1587,0	0/1:54:27,27:27:956:27:959:-70.3698,0,-70.1001	1/1:38:0,38:0:0:38:1339:-120.809,-11.4391,0	1/1:213:0,213:0:0:213:7567:-680.703,-64.1194,0	0/1:114:54,60:54:1928:60:2131:-157.739,0,-139.479	0/1:78:54,24:54:1905:24:856:-53.8808,0,-148.246	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	0/1:69:29,40:29:1013:40:1387:-104.351,0,-70.7083	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	1/1:284:0,284:0:0:284:10141:-912.62,-85.4925,0	0/1:211:123,88:123:4352:88:3128:-218.226,0,-328.343	1/1:39:0,39:0:0:39:1381:-124.587,-11.7402,0	1/1:208:1,207:1:36:207:7370:-659.749,-59.016,0	1/1:126:0,126:0:0:126:4465:-402.016,-37.9298,0	0/1:93:42,51:42:1472:51:1807:-134.913,0,-104.776	1/1:6:0,6:0:0:6:205:-18.7836,-1.80618,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:10:7,3:7:252:3:97:-6.03969,0,-20.0187	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	0/1:204:111,93:111:3951:93:3285:-234.462,0,-294.373	0/1:168:86,82:86:3045:82:2898:-210.477,0,-223.707	1/1:55:0,55:0:0:55:1949:-175.685,-16.5567,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:200:84,116:84:2988:116:4150:-313.476,0,-208.948	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:132:0,132:0:0:132:4694:-422.62,-39.736,0	1/1:78:0,78:0:0:78:2778:-250.26,-23.4803,0	0/1:55:35,20:35:1256:20:711:-47.759,0,-96.7886	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:109:58,51:58:2049:51:1814:-130.728,0,-151.867	0/1:157:74,83:74:2629:83:2968:-220.092,0,-189.595	1/1:105:0,105:0:0:105:3715:-334.55,-31.6082,0	0/1:136:75,61:75:2655:61:2180:-155.526,0,-198.257	1/1:146:0,146:0:0:146:5155:-464.092,-43.9504,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:104:57,47:57:2036:47:1684:-120.54,0,-152.205	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:115:0,115:0:0:115:4095:-368.736,-34.6185,0	1/1:45:1,44:1:36:44:1565:-137.541,-9.94808,0	1/1:10:0,10:0:0:10:360:-32.472,-3.0103,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:87:0,87:0:0:87:3082:-277.606,-26.1896,0	0/1:95:55,40:55:1920:40:1432:-100.58,0,-144.477	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:158:73,85:73:2589:85:3034:-225.727,0,-185.696	0/1:188:100,88:100:3553:88:3124:-224.789,0,-263.385	1/1:80:2,78:2:68:78:2779:-243.893,-17.6247,0	1/1:65:0,65:0:0:65:2308:-207.979,-19.567,0	0/1:120:57,63:57:1967:63:2244:-166.097,0,-141.177	1/1:92:0,92:0:0:92:3277:-295.103,-27.6948,0	1/1:22:0,22:0:0:22:775:-70.0712,-6.62266,0	1/1:74:0,74:0:0:74:2641:-237.935,-22.2762,0	0/1:73:44,29:44:1555:29:1036:-71.5787,0,-118.266	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/1:81:29,52:29:1036:52:1868:-144.016,0,-69.1705	0/1:93:29,64:29:1020:64:2276:-177.105,0,-64.1164	1/1:234:1,233:1:36:233:8280:-741.589,-66.8427,0	0/1:132:72,60:72:2549:60:2124:-151.69,0,-189.924	1/1:169:0,169:0:0:169:5976:-537.951,-50.8741,0	1/1:141:1,140:1:36:140:4981:-444.84,-38.847,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:131:1,130:1:36:130:4619:-412.819,-36.3804,0	0/1:117:58,59:58:2034:59:2105:-154.497,0,-148.109	0/1:190:103,87:103:3648:87:3107:-222.661,0,-271.33	0/1:101:53,48:53:1863:48:1698:-122.701,0,-137.545	0/1:38:14,24:14:500:24:843:-64.7489,0,-33.897	0/1:98:49,49:49:1727:49:1710:-124.679,0,-126.213	0/1:155:82,73:82:2884:73:2556:-183.628,0,-213.138	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	1/1:78:0,78:0:0:78:2743:-247.113,-23.4803,0	1/1:78:0,78:0:0:78:2760:-248.641,-23.4803,0	0/1:21:11,10:11:388:10:356:-26.0596,0,-28.9357	0/1:59:35,24:35:1244:24:860:-59.9611,0,-94.5039	0/1:86:63,23:63:2209:23:820:-48.2339,0,-173.186	1/1:72:1,71:1:36:71:2544:-225.612,-18.0759,0	1/1:91:0,90:0:0:90:3203:-288.144,-27.0927,0
chr01	994668	.	C	G	17250.2	PASS	AB=0.474895;ABP=21.327;AC=38;AF=0.204301;AN=186;AO=1594;CIGAR=1X;DP=7120;DPB=7120;DPRA=1.25239;EPP=3403.8;EPPR=11115.9;GTI=1;LEN=1;MEANALT=1.02381;MQM=30.692;MQMR=39.6358;NS=93;NUMALT=1;ODDS=0.505012;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56984;QR=195406;RO=5522;RPL=7;RPP=3403.8;RPPR=11115.9;RPR=1587;RUN=1;SAF=1594;SAP=3464.34;SAR=0;SRF=5522;SRP=11993.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:61:61,0:61:2132:0:0:0,-18.3628,-181.369	0/0:54:54,0:54:1915:0:0:0,-16.2556,-161.777	0/0:160:160,0:160:5681:0:0:0,-48.1648,-484.729	0/0:232:232,0:232:8209:0:0:0,-69.839,-707.303	0/0:44:43,1:43:1512:1:36:0,-10.1908,-127.236	0/0:41:41,0:41:1460:0:0:0,-12.3422,-124.718	0/0:122:122,0:122:4355:0:0:0,-36.7257,-372.798	0/0:85:85,0:85:3023:0:0:0,-25.5875,-256.946	0/0:114:114,0:114:4028:0:0:0,-34.3174,-345.254	0/0:55:55,0:55:1957:0:0:0,-16.5566,-168.033	0/0:49:49,0:49:1734:0:0:0,-14.7505,-149.914	0/1:79:41,38:41:1440:38:1333:-74.5497,0,-99.2296	0/1:61:30,31:30:1068:31:1108:-62.5866,0,-73.1643	0/1:36:11,25:11:396:25:881:-57.0616,0,-22.8831	0/1:46:20,26:20:720:26:936:-50.4534,0,-48.8028	0/0:39:39,0:39:1396:0:0:0,-11.7402,-119.565	0/0:32:32,0:32:1119:0:0:0,-9.63296,-93.4295	0/1:16:12,4:12:432:4:140:-5.81734,0,-32.0985	0/0:31:31,0:31:1108:0:0:0,-9.33193,-95.3422	0/0:109:109,0:109:3875:0:0:0,-32.8123,-335.664	0/1:419:218,201:218:7629:201:7203:-423.754,0,-527.99	0/1:80:26,54:26:924:54:1924:-134.725,0,-56.8737	0/0:89:89,0:89:3138:0:0:0,-26.7917,-270.04	0/1:44:25,19:25:881:19:684:-39.2927,0,-60.2045	0/0:71:71,0:71:2498:0:0:0,-21.3731,-214.846	0/0:235:234,0:234:8260:0:0:0,-70.441,-723.806	0/1:158:101,57:101:3595:57:2036:-108.469,0,-259.146	0/0:19:19,0:19:651:0:0:0,-5.71957,-56.216	0/0:176:175,1:175:6203:1:36:0,-50.4226,-541.267	0/0:108:108,0:108:3834:0:0:0,-32.5112,-325.549	0/1:85:50,35:50:1774:35:1256:-60.8028,0,-127.412	0/0:9:9,0:9:303:0:0:0,-2.70927,-26.5404	0/0:13:13,0:13:460:0:0:0,-3.91339,-39.7889	0/1:7:5,2:5:176:2:72:-3.40804,0,-13.363	0/1:8:6,2:6:212:2:72:-3.10701,0,-16.1442	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.7486	0/1:197:103,94:103:3659:94:3371:-215.687,0,-260.571	0/1:91:49,42:49:1718:42:1508:-87.9955,0,-120.266	0/0:25:25,0:25:883:0:0:0,-7.52575,-75.0637	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.12104	0/1:90:55,35:55:1939:35:1244:-68.582,0,-139.217	0/0:23:23,0:23:816:0:0:0,-6.92369,-69.9741	0/0:129:129,0:129:4535:0:0:0,-38.8329,-388.441	0/0:57:57,0:57:2028:0:0:0,-17.1587,-175.742	0/1:48:28,20:28:968:20:707:-34.4961,0,-69.1871	0/0:124:124,0:124:4384:0:0:0,-37.3277,-384.5	0/1:85:46,38:46:1644:38:1356:-73.6928,0,-111.621	0/1:125:62,63:62:2208:63:2268:-117.134,0,-153.077	0/0:68:68,0:68:2432:0:0:0,-20.47,-208.779	0/1:83:48,35:48:1691:35:1260:-61.4785,0,-120.041	0/0:127:127,0:127:4517:0:0:0,-38.2308,-393.563	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.3049	0/1:81:51,30:51:1800:30:1080:-54.2815,0,-127.771	0/0:38:38,0:38:1348:0:0:0,-11.4391,-119.024	0/0:17:17,0:17:594:0:0:0,-5.11751,-51.3924	0/0:132:130,0:130:4607:0:0:0,-39.1339,-390.023	0/0:33:33,0:33:1172:0:0:0,-9.93399,-101.426	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.1966	0/0:13:13,0:13:460:0:0:0,-3.91339,-40.3437	0/0:72:72,0:72:2564:0:0:0,-21.6742,-219.631	0/1:95:49,46:49:1755:46:1652:-85.5725,0,-123.521	.:.:.:.:.:.:.:.	0/1:149:67,82:67:2383:82:2895:-196.305,0,-164.207	0/1:114:73,41:73:2604:41:1460:-66.6277,0,-189.809	0/0:20:18,2:18:626:2:72:0,-0.216978,-47.53	0/0:64:64,0:64:2280:0:0:0,-19.2659,-196.72	0/1:149:78,71:78:2732:71:2540:-129.4,0,-190.125	0/0:102:102,0:102:3605:0:0:0,-30.7051,-310.7	0/0:29:28,1:28:985:1:36:0,-5.67533,-80.4787	0/0:43:43,0:43:1516:0:0:0,-12.9443,-129.621	0/1:36:8,28:8:288:28:996:-71.2005,0,-14.8663	0/1:23:7,16:7:244:16:576:-32.7512,0,-14.2722	0/1:147:66,81:66:2344:81:2908:-167.133,0,-156.469	0/1:81:41,40:41:1456:40:1436:-80.3025,0,-100.778	0/0:124:124,0:124:4341:0:0:0,-37.3277,-370.248	0/1:84:45,39:45:1599:39:1400:-71.2415,0,-112.875	0/0:70:70,0:70:2485:0:0:0,-21.0721,-213.158	0/0:85:85,0:85:3013:0:0:0,-25.5875,-256.757	0/0:11:11,0:11:396:0:0:0,-3.31133,-34.236	0/0:57:57,0:57:2044:0:0:0,-17.1587,-172.233	0/1:68:36,32:36:1249:32:1144:-63.2121,0,-85.7824	0/1:151:87,64:87:3095:64:2261:-111.022,0,-218.36	0/1:38:20,18:20:720:18:648:-32.9171,0,-50.7252	0/1:43:20,23:20:720:23:824:-43.6514,0,-48.7713	0/1:40:19,21:19:671:21:756:-39.9466,0,-46.0473	0/1:136:69,67:69:2430:67:2389:-123.105,0,-168.871	0/0:21:21,0:21:744:0:0:0,-6.32163,-64.3852	0/0:65:65,0:65:2307:0:0:0,-19.5669,-196.88	0/0:50:50,0:50:1792:0:0:0,-15.0515,-151.279	0/1:17:13,4:13:464:4:144:-6.18428,0,-35.0064	0/1:74:41,33:41:1424:33:1184:-67.7033,0,-98.9643	0/1:62:30,32:30:1061:32:1152:-60.4124,0,-73.0089	0/0:136:136,0:136:4746:0:0:0,-40.9401,-410.224	0/0:75:75,0:75:2658:0:0:0,-22.5772,-229.258
chr01	994694	.	ACCAA	ACAAA	110174	PASS	AB=0.523131;ABP=18.9827;AC=148;AF=0.795699;AN=186;AO=5651;CIGAR=2M1X2M;DP=7312;DPB=7327.8;DPRA=0;EPP=12274;EPPR=3562.05;GTI=1;LEN=1;MEANALT=1.2043;MQM=39.4695;MQMR=30.7657;NS=93;NUMALT=1;ODDS=0.721403;PAIRED=0;PAIREDR=0;PAO=27.6667;PQA=513.333;PQR=513.333;PRO=27.6667;QA=199801;QR=56110;RO=1639;RPL=5651;RPP=12274;RPPR=3562.05;RPR=0;RUN=1;SAF=5651;SAP=12274;SAR=0;SRF=1639;SRP=3562.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62:0:0:62:2183:-186.595,-18.6639,0	1/1:54:0,54:0:0:54:1900:-162.632,-16.2556,0	1/1:169:0,169:0:0:169:6018:-514.479,-50.8741,0	1/1:236:1,235:1:36:235:8317:-714.273,-67.4643,0	1/1:46:1,45:1:35:45:1589:-133.599,-10.8237,0	1/1:41:0,41:0:0:41:1441:-123.717,-12.3422,0	1/1:122:0,122:0:0:122:4327:-373.09,-36.7257,0	1/1:84:0,84:0:0:84:2958:-253.37,-25.2865,0	1/1:122:0,122:0:0:122:4319:-370.035,-36.7257,0	1/1:55:1,54:1:34:54:1903:-160.899,-13.1702,0	1/1:50:0,50:0:0:50:1769:-153.053,-15.0515,0	0/1:84:40,43:40:1352:43:1513:-104.409,0,-76.6411	0/1:61:31,30:31:1080:30:1058:-72.6284,0,-61.8276	0/1:35:24,10:24:820:10:342:-19.064,0,-53.9265	0/1:49:27,22:27:941:22:788:-53.6892,0,-51.2923	1/1:42:0,42:0:0:42:1494:-128.324,-12.6433,0	1/1:33:0,33:0:0:33:1132:-96.5829,-9.93399,0	0/1:17:5,12:5:160:12:427:-31.6325,0,-7.52992	1/1:33:0,33:0:0:33:1166:-100.423,-9.93399,0	1/1:108:0,108:0:0:108:3859:-333.989,-32.5112,0	0/1:440:208,231:208:6979:231:8189:-567.945,0,-417.815	0/1:85:57,28:57:1923:28:994:-61.843,0,-135.442	1/1:88:0,88:0:0:88:3103:-267.522,-26.4906,0	0/1:49:21,28:21:732:28:955:-66.4926,0,-42.4501	1/1:69:0,69:0:0:69:2462:-210.947,-20.7711,0	1/1:242:0,239:0:0:239:8479:-743.636,-71.9462,0	0/1:162:57,105:57:1922:105:3727:-270.22,0,-102.782	1/1:21:0,21:0:0:21:738:-63.4235,-6.32163,0	1/1:177:1,176:1:36:176:6232:-543.382,-49.7035,0	1/1:113:0,112:0:0:112:3966:-339.669,-33.7154,0	0/1:88:40,48:40:1321:48:1695:-119.973,0,-69.3759	1/1:8:0,7:0:0:7:248:-21.3683,-2.10721,0	1/1:13:0,13:0:0:13:455:-39.1064,-3.91339,0	0/1:7:2,5:2:70:5:176:-13.363,0,-3.36227	0/1:8:2,6:2:72:6:216:-16.4216,0,-3.10701	1/1:5:0,5:0:0:5:180:-15.7486,-1.50515,0	0/1:206:98,106:98:3341:106:3763:-268.921,0,-215.403	0/1:95:44,51:44:1515:51:1827:-128.052,0,-89.755	1/1:27:0,26:0:0:26:921:-78.4506,-7.82678,0	1/1:1:0,1:0:0:1:27:-2.67348,-0.30103,0	0/1:93:36,57:36:1245:57:1997:-143.72,0,-69.0206	1/1:23:0,23:0:0:23:801:-68.6333,-6.92369,0	1/1:139:0,139:0:0:139:4945:-423.682,-41.8432,0	1/1:61:0,61:0:0:61:2176:-188.447,-18.3628,0	0/1:51:19,32:19:644:32:1118:-81.4807,0,-30.8723	1/1:129:0,129:0:0:129:4590:-402.727,-38.8329,0	0/1:86:39,47:39:1342:47:1633:-113.365,0,-74.459	0/1:127:66,61:66:2283:61:2144:-147.604,0,-122.479	1/1:68:0,68:0:0:68:2392:-206.523,-20.47,0	0/1:81:35,46:35:1225:46:1606:-114.367,0,-61.369	1/1:133:0,130:0:0:130:4588:-401.545,-39.1339,0	1/1:8:0,8:0:0:8:265:-23.1656,-2.40824,0	0/1:79:30,48:30:1036:48:1677:-119.902,0,-53.8374	1/1:39:0,39:0:0:39:1388:-122.513,-11.7402,0	1/1:17:0,17:0:0:17:608:-52.4774,-5.11751,0	1/1:136:0,136:0:0:136:4762:-406.432,-40.9401,0	1/1:33:0,33:0:0:33:1172:-101.529,-9.93399,0	1/1:6:0,6:0:0:6:199:-17.6881,-1.80618,0	1/1:14:0,14:0:0:14:498:-43.9713,-4.21442,0	1/1:73:0,73:0:0:73:2596:-222.71,-21.9752,0	0/1:97:49,48:49:1682:48:1728:-120.38,0,-90.3575	.:.:.:.:.:.:.:.	0/1:152:83,69:83:2865:69:2460:-170.575,0,-194.818	0/1:115:42,73:42:1453:73:2580:-188.229,0,-67.8823	1/1:20:2,18:2:72:18:638:-48.8,-0.216979,0	1/1:66:0,66:0:0:66:2358:-203.637,-19.868,0	0/1:146:70,76:70:2411:76:2671:-186.449,0,-125.961	1/1:107:0,107:0:0:107:3792:-327.651,-32.2102,0	1/1:29:1,28:1:34:28:983:-81.3222,-5.74221,0	1/1:43:0,39:0:0:39:1362:-116.108,-11.7402,0	0/1:38:30,8:30:1033:8:288:-14.2642,0,-74.7125	0/1:25:17,8:17:581:8:273:-16.0122,0,-34.0031	0/1:158:84,74:84:2881:74:2645:-178.959,0,-167.677	0/1:81:40,40:40:1352:40:1431:-98.4464,0,-77.8066	1/1:131:0,131:0:0:131:4603:-393.919,-39.4349,0	0/1:86:39,47:39:1366:47:1667:-118.314,0,-69.8776	1/1:79:0,79:0:0:79:2799:-240.044,-23.7814,0	1/1:84:0,84:0:0:84:2956:-253.226,-25.2865,0	1/1:11:0,11:0:0:11:392:-33.961,-3.31133,0	1/1:54:0,53:0:0:53:1867:-159.458,-15.9546,0	0/1:72:35,37:35:1184:37:1296:-89.3797,0,-67.7212	0/1:152:64,88:64:2224:88:3085:-220.33,0,-110.48	0/1:36:17,19:17:586:19:670:-47.4002,0,-30.6935	0/1:42:22,19:22:757:19:666:-45.2063,0,-41.2318	0/1:40:21,19:21:709:19:671:-46.121,0,-38.8831	0/1:139:68,71:68:2354:71:2475:-172.563,0,-123.881	1/1:19:0,19:0:0:19:676:-58.3381,-5.71957,0	1/1:69:0,69:0:0:69:2436:-208.672,-20.7711,0	1/1:52:0,52:0:0:52:1812:-154.906,-15.6536,0	0/1:17:4,13:4:143:13:464:-35.0064,0,-6.15571	0/1:75:33,42:33:1148:42:1491:-104.989,0,-66.2018	0/1:63:32,31:32:1097:31:1103:-76.5938,0,-59.0544	1/1:135:0,135:0:0:135:4778:-411.886,-40.6391,0	1/1:76:1,75:1:34:75:2674:-227.882,-19.7792,0
chr01	997179	.	G	A	155662	PASS	AB=0.496238;ABP=3.63121;AC=147;AF=0.790323;AN=186;AO=7526;CIGAR=1X;DP=10082;DPB=10082;DPRA=0;EPP=16293.4;EPPR=5540.27;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.9851;MQMR=59.9918;NS=93;NUMALT=1;ODDS=1.27707;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=265826;QR=90972;RO=2554;RPL=0;RPP=16345.5;RPPR=5548.95;RPR=7526;RUN=1;SAF=7520;SAP=16293.4;SAR=6;SRF=2553;SRP=5540.27;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:120:0,120:0:0:120:4221:-380.068,-36.1236,0	1/1:82:0,82:0:0:82:2880:-259.433,-24.6845,0	1/1:265:0,265:0:0:265:9400:-845.96,-79.773,0	1/1:22:0,22:0:0:22:768:-69.4376,-6.62266,0	1/1:46:0,46:0:0:46:1641:-147.977,-13.8474,0	1/1:153:0,153:0:0:153:5422:-488.098,-46.0576,0	1/1:202:0,201:0:0:201:7144:-642.803,-60.507,0	1/1:95:0,95:0:0:95:3359:-302.524,-28.5979,0	1/1:81:0,81:0:0:81:2851:-256.825,-24.3834,0	1/1:114:0,114:0:0:114:3967:-357.218,-34.3174,0	0/1:94:51,43:51:1821:43:1540:-110.596,0,-135.872	0/1:95:58,37:58:2061:37:1317:-90.232,0,-157.162	0/1:104:52,52:52:1834:52:1853:-135.741,0,-134.03	0/1:82:39,43:39:1381:43:1521:-112.497,0,-99.9023	1/1:76:0,76:0:0:76:2691:-242.43,-22.8783,0	1/1:85:0,85:0:0:85:2977:-268.158,-25.5876,0	0/1:67:35,32:35:1256:32:1122:-81.1148,0,-93.1763	1/1:74:0,74:0:0:74:2551:-229.824,-22.2762,0	1/1:168:1,166:1:36:166:5828:-521.021,-46.9586,0	0/1:171:86,85:86:3035:85:2992:-218.031,0,-221.901	0/1:55:38,17:38:1334:17:608:-38.4954,0,-103.799	1/1:66:0,66:0:0:66:2283:-205.724,-19.868,0	0/1:126:60,66:60:2145:66:2342:-173.106,0,-155.386	1/1:87:0,87:0:0:87:3098:-279.045,-26.1896,0	1/1:344:0,344:0:0:344:12215:-1099.19,-103.554,0	0/1:266:123,143:123:4386:143:5113:-379.748,0,-314.837	1/1:58:0,58:0:0:58:2039:-183.777,-17.4597,0	1/1:211:0,211:0:0:211:7457:-671.172,-63.5173,0	1/1:105:1,104:1:36:104:3627:-323.032,-28.0099,0	0/1:125:67,58:67:2408:58:2054:-147.499,0,-179.347	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:14:10,4:10:360:4:129:-7.71324,0,-28.5299	1/1:12:0,12:0:0:12:393:-35.6831,-3.61236,0	0/1:337:173,164:173:6164:164:5790:-419.767,0,-453.407	0/1:140:69,71:69:2465:71:2526:-185.444,0,-179.958	1/1:72:0,72:0:0:72:2511:-226.235,-21.6742,0	.:.:.:.:.:.:.:.	0/1:180:96,84:96:3425:84:2915:-208.393,0,-254.277	1/1:64:0,64:0:0:64:2190:-197.355,-19.2659,0	1/1:81:0,81:0:0:81:2828:-254.754,-24.3834,0	1/1:132:0,132:0:0:132:4650:-418.659,-39.736,0	0/1:110:60,50:60:2141:50:1762:-125.746,0,-159.843	1/1:121:0,121:0:0:121:4348:-391.493,-36.4246,0	0/1:107:56,51:56:2016:51:1773:-127.636,0,-149.503	0/1:243:125,118:125:4446:118:4179:-303.141,0,-327.16	1/1:91:0,91:0:0:91:3212:-289.298,-27.3937,0	0/1:158:69,89:69:2465:89:3106:-232.199,0,-174.54	1/1:145:0,145:0:0:145:5201:-468.226,-43.6494,0	1/1:16:0,16:0:0:16:531:-48.1014,-4.81648,0	0/1:156:88,68:88:3137:68:2433:-172.263,0,-235.594	1/1:104:0,104:0:0:104:3657:-329.33,-31.3071,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:124:0,124:0:0:124:4433:-399.14,-37.3277,0	1/1:45:0,45:0:0:45:1590:-143.385,-13.5464,0	1/1:10:0,10:0:0:10:330:-30.0173,-3.0103,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:88:0,88:0:0:88:3121:-281.114,-26.4906,0	0/1:143:76,67:76:2717:67:2378:-171.227,0,-201.724	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:216:83,133:83:2931:133:4708:-358.855,0,-198.999	0/1:246:131,115:131:4678:115:4112:-296.21,0,-347.125	1/1:86:7,79:7:252:79:2805:-229.658,-2.85962,0	1/1:75:0,75:0:0:75:2656:-239.284,-22.5773,0	0/1:126:48,78:48:1679:78:2772:-211.789,0,-113.461	1/1:65:0,65:0:0:65:2298:-207.078,-19.567,0	1/1:45:1,44:1:36:44:1520:-133.486,-9.94808,0	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	0/1:108:64,44:64:2274:44:1550:-107.276,0,-172.408	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	0/1:118:48,70:48:1668:70:2471:-187.118,0,-114.877	0/1:125:60,65:60:2156:65:2328:-172.151,0,-156.609	1/1:171:0,171:0:0:171:6079:-547.211,-51.4761,0	0/1:165:85,80:85:3030:80:2846:-206.705,0,-223.257	1/1:69:0,69:0:0:69:2435:-219.401,-20.7711,0	1/1:165:0,165:0:0:165:5766:-519.054,-49.67,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:113:0,113:0:0:113:3981:-358.477,-34.0164,0	0/1:88:35,53:35:1228:53:1874:-142.444,0,-84.3304	0/1:204:104,100:104:3728:100:3483:-252.266,0,-274.31	0/1:127:58,69:58:2043:69:2411:-179.01,0,-145.906	0/1:75:32,43:32:1152:43:1488:-111.628,0,-81.4129	0/1:95:45,50:45:1616:50:1777:-131.613,0,-117.132	0/1:184:84,100:84:3024:100:3536:-263.056,0,-217	1/1:56:0,56:0:0:56:1951:-175.852,-16.8577,0	1/1:93:0,93:0:0:93:3348:-301.535,-27.9958,0	1/1:88:0,88:0:0:88:3153:-283.993,-26.4906,0	0/1:72:40,32:40:1440:32:1118:-79.2493,0,-108.224	0/1:177:102,75:102:3622:75:2669:-187.172,0,-272.902	0/1:110:72,38:72:2554:38:1315:-85.53,0,-196.994	1/1:166:0,166:0:0:166:5887:-529.939,-49.971,0	1/1:132:0,132:0:0:132:4631:-416.95,-39.736,0
chr01	997206	.	T	A	44055.2	PASS	AB=0.503978;ABP=3.7013;AC=39;AF=0.209677;AN=186;AO=2546;CIGAR=1X;DP=10036;DPB=10036;DPRA=1.35804;EPP=5299.55;EPPR=15590.4;GTI=3;LEN=1;MEANALT=1.04444;MQM=59.9969;MQMR=59.9896;NS=93;NUMALT=1;ODDS=0.612845;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90997;QR=268196;RO=7487;RPL=2520;RPP=5308.05;RPPR=15615.9;RPR=26;RUN=1;SAF=2545;SAP=5522.9;SAR=1;SRF=7478;SRP=16182.7;SRR=9;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:121:121,0:121:4326:0:0:0,-36.4246,-389.515	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:262:262,0:262:9367:0:0:0,-78.8699,-842.992	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.756	0/0:151:150,0:150:5376:0:0:0,-45.1545,-483.611	0/0:203:203,0:203:7284:0:0:0,-61.1091,-655.503	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:79:79,0:79:2814:0:0:0,-23.7814,-253.499	0/0:112:112,0:112:4015:0:0:0,-33.7154,-361.538	0/1:96:43,53:43:1548:53:1875:-140.128,0,-110.714	0/1:96:36,60:36:1288:60:2142:-164.149,0,-87.3247	0/1:105:52,53:52:1857:53:1892:-138.95,0,-135.8	0/1:81:43,38:43:1540:38:1368:-99.0374,0,-114.51	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.593	0/0:83:83,0:83:2967:0:0:0,-24.9855,-267.263	0/1:66:31,35:31:1108:35:1256:-93.4773,0,-80.163	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.52	0/0:163:162,1:162:5808:1:36:0,-45.4696,-519.148	0/1:169:84,85:84:3012:85:3032:-222.236,0,-220.437	0/1:57:17,39:17:612:39:1400:-109.082,0,-38.1959	0/0:68:67,1:67:2381:1:36:0,-16.8718,-210.948	0/1:131:68,63:68:2435:63:2268:-164.947,0,-179.97	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:342:342,0:342:12245:0:0:0,-102.952,-1101.89	0/1:265:140,125:140:5032:125:4449:-320.809,0,-373.251	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:212:212,0:212:7620:0:0:0,-63.8184,-685.833	0/0:102:101,1:101:3619:1:36:0,-27.1068,-322.316	0/1:127:59,68:59:2120:68:2428:-180.545,0,-152.838	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:338:164,174:164:5854:174:6230:-459.047,0,-425.224	0/1:138:66,71:66:2372:71:2548:-188.058,0,-172.225	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	.:.:.:.:.:.:.:.	0/1:178:83,95:83:2963:95:3397:-252.361,0,-213.32	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:134:134,0:134:4798:0:0:0,-40.338,-431.974	0/1:106:49,57:49:1764:57:2040:-151.963,0,-127.135	0/0:121:121,0:121:4328:0:0:0,-36.4246,-389.693	0/1:106:49,57:49:1752:57:2033:-151.331,0,-126.055	0/1:245:121,124:121:4323:124:4409:-323.229,0,-315.494	0/0:90:90,0:90:3206:0:0:0,-27.0927,-288.763	0/1:156:89,67:89:3175:67:2381:-167.587,0,-239.014	0/0:145:145,0:145:5203:0:0:0,-43.6493,-468.407	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:153:68,85:68:2440:85:3047:-228.401,0,-173.797	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:123:123,0:123:4399:0:0:0,-37.0267,-396.083	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.505	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:143:68,75:68:2444:75:2675:-197.948,0,-177.167	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:216:134,82:134:4803:82:2944:-200.171,0,-367.402	0/1:243:116,127:116:4144:127:4536:-335.258,0,-299.994	0/0:86:79,7:79:2824:7:252:0,-2.85962,-231.37	0/0:76:76,0:76:2690:0:0:0,-22.8783,-242.345	0/1:125:76,49:76:2714:49:1738:-119.073,0,-206.874	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:45:44,1:44:1580:1:36:0,-9.94807,-138.893	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:107:44,63:44:1567:63:2264:-171.812,0,-109.111	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	0/1:117:69,48:69:2468:48:1724:-120.225,0,-187.154	0/1:121:65,56:65:2323:56:1992:-143.13,0,-172.905	0/0:171:171,0:171:6131:0:0:0,-51.4761,-551.888	0/1:162:80,82:80:2876:82:2932:-215.348,0,-210.309	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:162:162,0:162:5803:0:0:0,-48.7669,-522.383	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:112:112,0:112:4015:0:0:0,-33.7154,-361.538	0/1:89:53,36:53:1896:36:1283:-88.981,0,-144.126	0/1:201:97,104:97:3479:104:3712:-273.775,0,-252.813	0/1:128:69,59:69:2463:59:2124:-152.896,0,-183.392	0/1:75:43,32:43:1548:32:1148:-81.0526,0,-117.036	0/1:96:52,44:52:1857:44:1576:-113.233,0,-138.509	0/1:182:97,85:97:3447:85:3021:-217.334,0,-255.654	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.528	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.062	0/1:71:31,40:31:1116:40:1440:-108.525,0,-79.3786	0/1:174:76,98:76:2727:98:3494:-262.292,0,-193.293	0/1:113:39,74:39:1400:74:2651:-204.819,0,-92.2828	0/0:164:164,0:164:5900:0:0:0,-49.3689,-531.106	0/0:129:128,1:128:4600:1:36:0,-35.2346,-410.564
chr01	1017365	.	G	T	56196.1	PASS	AB=0.504142;ABP=3.26214;AC=147;AF=0.790323;AN=186;AO=2641;CIGAR=1X;DP=3481;DPB=3481;DPRA=0;EPP=5668.59;EPPR=1781.71;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.9701;MQMR=60;NS=93;NUMALT=1;ODDS=0.852458;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94546;QR=30022;RO=839;RPL=8;RPP=5668.59;RPPR=1781.71;RPR=2633;RUN=1;SAF=2641;SAP=5737.87;SAR=0;SRF=839;SRP=1824.88;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:771:-69.7057,-6.62266,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:95:0,95:0:0:95:3397:-305.944,-28.5979,0	1/1:50:0,50:0:0:50:1788:-161.198,-15.0515,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:42:1,41:1:32:41:1468:-129.217,-9.44395,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:40:0,40:0:0:40:1431:-129.087,-12.0412,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.4848	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:65:0,65:0:0:65:2312:-208.341,-19.567,0	0/1:65:29,36:29:1032:36:1292:-97.0153,0,-73.6265	0/1:30:23,7:23:828:7:248:-13.6333,0,-65.8132	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:109:0,109:0:0:109:3909:-352.002,-32.8123,0	0/1:164:80,84:80:2872:84:3010:-221.761,0,-209.348	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:82:0,82:0:0:82:2932:-264.115,-24.6845,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:30:17,13:17:597:13:468:-33.4287,0,-45.0252	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	.:.:.:.:.:.:.:.	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:34:13,21:13:468:21:752:-57.7712,0,-32.2246	0/1:115:55,60:55:1957:60:2160:-160.048,0,-141.785	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:41:23,18:23:828:18:644:-45.9484,0,-62.5019	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	1/1:36:1,35:1:36:35:1256:-109.747,-7.23881,0	0/1:53:28,25:28:1004:25:891:-64.5542,0,-74.7213	0/1:88:41,47:41:1457:47:1680:-124.91,0,-104.933	1/1:53:0,53:0:0:53:1877:-169.205,-15.9546,0	0/1:76:31,45:31:1116:45:1616:-122.852,0,-77.8734	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:69:36,32:36:1292:32:1148:-82.8,0,-95.7539	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:75:0,75:0:0:75:2676:-241.084,-22.5773,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:38:17,21:17:604:21:752:-56.5671,0,-43.2515	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:92:47,45:47:1669:45:1576:-114.43,0,-122.801	0/1:68:36,32:36:1284:32:1148:-83.1598,0,-95.3934	1/1:50:0,50:0:0:50:1788:-161.2,-15.0515,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:75:33,42:33:1184:42:1504:-113.077,0,-84.2911	1/1:81:0,81:0:0:81:2907:-261.864,-24.3834,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:23:0,23:0:0:23:819:-74.0316,-6.92369,0	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/1:17:9,8:9:315:8:288:-21.1499,0,-23.5697	0/1:80:46,34:46:1644:34:1211:-85.2131,0,-124.166	0/1:53:24,29:24:864:29:1040:-77.9598,0,-62.128	1/1:39:0,39:0:0:39:1400:-126.289,-11.7402,0	0/1:85:48,37:48:1724:37:1332:-94.5948,0,-129.858	1/1:59:0,59:0:0:59:2120:-191.064,-17.7608,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:52:30,22:30:1080:22:792:-55.9521,0,-81.8597	0/1:68:35,33:35:1243:33:1176:-85.6777,0,-91.7038	0/1:35:15,20:15:540:20:720:-54.5927,0,-38.4005	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:24:5,19:5:180:19:676:-53.9433,0,-9.32734	1/1:15:0,15:0:0:15:537:-48.6653,-4.51545,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:98:0,98:0:0:98:3520:-317.008,-29.5009,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0
chr01	1017372	.	T	G	56541.7	PASS	AB=0.504751;ABP=3.34041;AC=147;AF=0.790323;AN=186;AO=2630;CIGAR=1X;DP=3470;DPB=3470;DPRA=0;EPP=5481.87;EPPR=1700.96;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.9734;MQMR=60;NS=93;NUMALT=1;ODDS=0.853326;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93962;QR=30001;RO=837;RPL=27;RPP=5481.87;RPPR=1700.96;RPR=2603;RUN=1;SAF=2630;SAP=5713.98;SAR=0;SRF=837;SRP=1820.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:752:-68.0016,-6.32163,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:94:0,94:0:0:94:3355:-302.167,-28.2968,0	1/1:49:0,49:0:0:49:1748:-157.602,-14.7505,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:40:0,40:0:0:40:1413:-127.465,-12.0412,0	1/1:41:1,40:1:36:40:1420:-124.499,-8.74396,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:20:12,8:12:428:8:284:-19.8828,0,-32.8382	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:64:0,64:0:0:64:2275:-205.012,-19.2659,0	0/1:65:29,36:29:1040:36:1292:-97.0153,0,-74.3474	0/1:30:23,7:23:824:7:252:-13.9981,0,-65.4524	1/1:23:0,23:0:0:23:809:-73.1292,-6.92369,0	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	1/1:111:1,110:1:36:110:3922:-349.571,-29.8161,0	0/1:162:78,84:78:2799:84:2998:-221.285,0,-203.382	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:84:0,83:0:0:83:2972:-267.353,-24.9855,0	1/1:44:0,44:0:0:44:1565:-141.14,-13.2453,0	0/1:29:16,13:16:563:13:468:-33.7298,0,-42.2693	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	.:.:.:.:.:.:.:.	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:34:13,21:13:468:21:752:-57.7712,0,-32.2246	0/1:117:55,62:55:1967:62:2216:-164.483,0,-142.084	1/1:17:0,17:0:0:17:603:-54.5987,-5.11751,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:41:23,18:23:824:18:648:-46.3097,0,-62.1411	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	1/1:36:1,35:1:36:35:1256:-109.747,-7.23881,0	0/1:53:28,25:28:1008:25:887:-64.1935,0,-75.0818	0/1:89:42,47:42:1508:47:1688:-125.415,0,-109.223	1/1:54:0,53:0:0:53:1904:-171.276,-15.9546,0	0/1:76:30,46:30:1071:46:1656:-126.45,0,-73.8233	1/1:54:0,54:0:0:54:1931:-174.066,-16.2556,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:65:37,28:37:1328:28:1008:-71.4694,0,-100.255	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:74:0,74:0:0:74:2641:-237.935,-22.2762,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:38:17,21:17:597:21:756:-56.9281,0,-42.617	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:91:46,45:46:1648:45:1608:-117.616,0,-121.215	0/1:67:35,32:35:1248:32:1143:-83.0103,0,-92.4559	1/1:51:0,50:0:0:50:1783:-160.387,-15.0515,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:75:33,42:33:1180:42:1490:-111.816,0,-83.9308	1/1:80:0,80:0:0:80:2870:-258.537,-24.0824,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:34:19,15:19:684:15:536:-38.3398,0,-51.6553	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:80:47,33:47:1680:33:1167:-81.254,0,-127.405	0/1:51:23,28:23:828:28:1008:-75.6838,0,-59.4916	1/1:40:0,40:0:0:40:1392:-125.574,-12.0412,0	0/1:85:48,37:48:1728:37:1324:-93.8745,0,-130.218	1/1:55:0,55:0:0:55:1944:-175.232,-16.5567,0	1/1:60:0,60:0:0:60:2140:-192.868,-18.0618,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:52:29,23:29:1040:23:824:-58.8298,0,-78.2608	0/1:69:35,34:35:1260:34:1216:-88.9755,0,-92.9344	0/1:35:15,20:15:540:20:720:-54.5927,0,-38.4005	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:24:6,18:6:212:18:644:-51.0659,0,-12.2001	1/1:14:0,14:0:0:14:501:-45.4267,-4.21442,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:98:0,98:0:0:98:3497:-314.94,-29.5009,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0
chr01	1017375	.	A	G	16000.2	PASS	AB=0.491716;ABP=4.01766;AC=39;AF=0.209677;AN=186;AO=834;CIGAR=1X;DP=3484;DPB=3484;DPRA=1.42323;EPP=1103.07;EPPR=3040.63;GTI=0;LEN=1;MEANALT=1.02381;MQM=59.976;MQMR=59.9607;NS=93;NUMALT=1;ODDS=1.03031;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29708;QR=94986;RO=2649;RPL=742;RPP=1103.07;RPPR=3040.63;RPR=92;RUN=1;SAF=834;SAP=1814.02;SAR=0;SRF=2649;SRP=5755.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1242	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.322	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:42:41,1:41:1472:1:36:0,-9.04498,-129.178	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:20:8,12:8:288:12:417:-31.8396,0,-20.2468	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:18:10,8:10:360:8:280:-20.1208,0,-27.3258	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:66:36,30:36:1292:30:1076:-77.2849,0,-96.7142	0/1:28:7,21:7:248:21:743:-58.7645,0,-14.2354	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:111:110,1:110:3952:1:25:0,-30.9145,-353.284	0/1:163:85,77:85:3056:77:2744:-198.073,0,-226.142	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:29:12,17:12:432:17:608:-46.3222,0,-30.4913	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	.:.:.:.:.:.:.:.	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:34:21,13:21:756:13:468:-32.2246,0,-58.1322	0/1:118:62,56:62:2224:56:1985:-143.344,0,-164.903	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4072	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:41:18,23:18:648:23:828:-62.5019,0,-46.3097	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:18:9,9:9:309:9:324:-24.0873,0,-22.7222	0/0:37:36,1:36:1288:1:36:0,-7.53983,-112.625	0/1:52:25,27:25:900:27:968:-71.7838,0,-65.6675	0/1:88:48,40:48:1724:40:1436:-103.047,0,-128.869	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.874	0/1:78:46,32:46:1648:32:1134:-78.8869,0,-125.128	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/1:69:32,37:32:1144:37:1311:-97.5198,0,-82.4984	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:37:21,16:21:756:16:572:-40.6753,0,-57.2291	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:93:46,47:46:1656:47:1684:-123.851,0,-121.277	0/1:69:32,37:32:1140:37:1311:-97.5204,0,-82.1381	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.912	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:75:42,33:42:1512:33:1184:-84.2911,0,-113.797	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:33:15,18:15:540:18:642:-48.1757,0,-39.0025	0/1:17:8,9:8:284:9:316:-23.6613,0,-20.7858	0/1:79:34,45:34:1220:45:1620:-122.309,0,-86.3254	0/1:52:28,24:28:1004:24:845:-60.7144,0,-75.0223	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.093	0/1:82:37,45:37:1316:45:1616:-121.046,0,-94.0573	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.227	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:52:23,29:23:828:29:1031:-77.4491,0,-59.1906	0/1:70:34,36:34:1216:36:1270:-93.5292,0,-88.6745	0/1:35:20,15:20:720:15:525:-37.042,0,-54.5927	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/1:6:1,5:1:36:5:171:-13.9193,0,-1.79209	0/1:25:19,6:19:676:6:216:-12.2648,0,-53.6422	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:6:3,3:3:108:3:99:-7.4304,0,-8.26899	0/1:27:15,12:15:536:12:423:-30.2773,0,-40.447	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:96:96,0:96:3437:0:0:0,-28.8989,-309.541	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826
chr01	1124826	.	A	G	26746.2	PASS	AB=0.516192;ABP=9.97222;AC=41;AF=0.218085;AN=188;AO=1591;CIGAR=1X;DP=6448;DPB=6448;DPRA=1.27845;EPP=3457.82;EPPR=10510.8;GTI=2;LEN=1;MEANALT=1.08511;MQM=59.9855;MQMR=60;NS=94;NUMALT=1;ODDS=1.44646;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56833;QR=168845;RO=4851;RPL=0;RPP=3457.82;RPPR=10510.8;RPR=1591;RUN=1;SAF=1591;SAP=3457.82;SAR=0;SRF=4851;SRP=10536.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:71:71,0:71:2427:0:0:0,-21.3731,-218.678	0/0:37:37,0:37:1278:0:0:0,-11.1381,-115.316	0/0:69:69,0:69:2392:0:0:0,-20.7711,-215.533	0/0:140:139,1:139:4889:1:36:0,-38.5459,-436.564	0/0:32:32,0:32:1114:0:0:0,-9.63296,-100.563	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/0:94:94,0:94:3255:0:0:0,-28.2968,-293.166	0/0:99:99,0:99:3461:0:0:0,-29.802,-311.7	0/0:123:123,0:123:4279:0:0:0,-37.0267,-385.288	0/0:61:60,1:60:2126:1:36:0,-14.7646,-188.007	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/1:93:52,41:52:1856:41:1472:-104.78,0,-139.324	0/1:60:26,34:26:894:34:1224:-92.4052,0,-62.7073	0/1:51:31,20:31:1089:20:720:-49.7762,0,-82.9648	0/1:68:40,28:40:1420:28:1008:-70.5663,0,-107.627	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:28:13,15:13:464:15:536:-40.146,0,-33.6687	0/0:33:32,1:32:1144:1:36:0,-6.33571,-99.6712	0/0:89:89,0:89:3017:0:0:0,-26.7917,-271.754	0/1:101:35,66:35:1218:66:2349:-181.264,0,-79.5153	0/1:98:33,64:33:1124:64:2296:-177.341,0,-71.897	0/0:82:82,0:82:2797:0:0:0,-24.6845,-251.962	0/1:55:22,33:22:788:33:1172:-89.2308,0,-54.6881	0/0:64:64,0:64:2231:0:0:0,-19.2659,-201.05	0/0:188:188,0:188:6357:0:0:0,-56.5936,-572.227	0/1:188:84,103:84:2907:103:3689:-275.559,0,-205.207	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:189:187,2:187:6439:2:72:0,-50.0579,-572.766	0/0:66:66,0:66:2318:0:0:0,-19.868,-208.878	0/1:96:53,43:53:1872:43:1525:-108.642,0,-139.86	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:27:27,0:27:933:0:0:0,-8.12781,-84.2806	0/1:11:3,8:3:93:8:288:-22.9561,0,-5.3654	0/1:11:5,6:5:161:6:216:-16.4792,0,-11.4952	0/0:41:41,0:41:1399:0:0:0,-12.3422,-126.199	0/1:191:84,107:84:3004:107:3833:-287.668,0,-213.095	0/1:76:50,26:50:1738:26:921:-60.3269,0,-133.822	0/0:40:39,0:39:1396:0:0:0,-11.7402,-125.671	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:86:39,47:39:1336:47:1676:-125.239,0,-94.6412	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:97:97,0:97:3261:0:0:0,-29.1999,-293.703	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7228	0/1:44:19,25:19:661:25:883:-66.5421,0,-46.5663	0/0:116:116,0:116:4009:0:0:0,-34.9195,-360.996	0/1:44:19,25:19:665:25:900:-68.0757,0,-46.9275	0/1:101:39,62:39:1294:62:2185:-166.51,0,-86.3408	0/0:81:81,0:81:2802:0:0:0,-24.3834,-252.415	0/1:81:39,42:39:1379:42:1504:-111.271,0,-100.025	0/0:152:152,0:152:5330:0:0:0,-45.7566,-479.836	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:93:49,43:49:1737:43:1514:-108.495,0,-128.558	0/0:40:40,0:40:1360:0:0:0,-12.0412,-122.688	0/0:20:20,0:20:677:0:0:0,-6.0206,-61.2426	0/0:82:82,0:82:2789:0:0:0,-24.6845,-251.243	0/0:54:54,0:54:1848:0:0:0,-16.2556,-166.593	0/0:6:6,0:6:197:0:0:0,-1.80618,-18.0513	0/0:22:21,0:21:737:0:0:0,-6.32163,-66.4342	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/1:77:43,34:43:1510:34:1220:-86.9275,0,-113.01	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:126:58,68:58:1997:68:2444:-182.285,0,-142.066	0/1:109:55,54:55:1923:54:1917:-139.993,0,-140.529	0/0:47:45,2:45:1559:2:72:0,-7.31169,-133.758	0/0:50:48,2:48:1664:2:68:0,-8.59379,-143.581	0/1:74:22,52:22:765:52:1864:-145.763,0,-46.8915	0/0:86:86,0:86:2933:0:0:0,-25.8886,-264.197	0/0:38:37,1:37:1313:1:36:0,-7.84086,-114.871	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:35:24,11:24:852:11:392:-25.084,0,-66.4643	0/1:26:17,9:17:612:9:309:-20.3139,0,-47.5867	0/1:125:61,64:61:2112:64:2290:-168.733,0,-152.714	0/1:72:34,38:34:1160:38:1356:-100.666,0,-83.021	0/0:102:102,0:102:3535:0:0:0,-30.7051,-318.356	0/1:118:54,64:54:1875:64:2304:-172.099,0,-133.502	0/0:76:76,0:76:2622:0:0:0,-22.8783,-236.221	0/0:57:57,0:57:1994:0:0:0,-17.1587,-179.731	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:68:68,0:68:2346:0:0:0,-20.47,-211.391	0/1:62:29,33:29:1025:33:1171:-87.0328,0,-73.8968	0/1:213:120,93:120:4224:93:3327:-235.529,0,-316.221	0/1:72:39,33:39:1377:33:1176:-84.4736,0,-102.553	0/1:49:25,24:25:888:24:864:-63.3321,0,-65.4886	0/1:33:20,13:20:712:13:464:-32.1635,0,-54.4727	0/1:93:45,47:45:1608:47:1676:-123.072,0,-116.956	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:28:18,10:18:648:10:356:-23.9524,0,-50.223	0/1:94:51,43:51:1817:43:1531:-109.786,0,-135.513	0/1:69:23,46:23:824:46:1653:-128.157,0,-53.7122	0/0:83:83,0:83:2757:0:0:0,-24.9855,-248.361	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.814
chr01	1139925	.	CACAC	CACCC,GACAG	153591	PASS	AB=0.462553,0.531382;ABP=49.1976,35.4472;AC=147,39;AF=0.790323,0.209677;AN=186;AO=5506,2023;CIGAR=3M1X1M,1X3M1X;DP=7589;DPB=7589.4;DPRA=0,1.42356;EPP=11959.1,4395.9;EPPR=55.1256;GTI=5;LEN=1,5;MEANALT=1.83871,2.45455;MQM=51.9501,38.3164;MQMR=57.7083;NS=93;NUMALT=2;ODDS=1.61627;PAIRED=0,0;PAIREDR=0;PAO=0,3;PQA=0,108;PQR=0;PRO=0;QA=193607,71255;QR=704;RO=24;RPL=0,0;RPP=11959.1,4395.9;RPPR=55.1256;RPR=5506,2023;RUN=1,1;SAF=5506,2023;SAP=11959.1,4395.9;SAR=0,0;SRF=24;SRP=55.1256;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:77:2,75,0:2:65:75,0:2652,0:-232.038,-17.0059,0,-232.64,-22.5773,-237.886	1/1:44:0,44,0:0:0:44,0:1539,0:-138.377,-13.2453,0,-138.377,-13.2453,-138.377	1/1:138:2,136,0:2:60:136,0:4789,0:-423.315,-35.8439,0,-423.918,-40.9401,-428.713	1/1:127:0,127,0:0:0:127,0:4451,0:-399.482,-38.2308,0,-399.482,-38.2308,-399.482	1/1:36:0,35,0:0:0:35,0:1248,0:-112.079,-10.5361,0,-112.079,-10.5361,-112.079	1/1:27:0,27,0:0:0:27,0:956,0:-85.9654,-8.12781,0,-85.9654,-8.12781,-85.9654	1/1:75:0,75,0:0:0:75,0:2620,0:-235.39,-22.5773,0,-235.39,-22.5773,-235.39	1/1:80:1,79,0:1:36:79,0:2775,0:-245.89,-20.4841,0,-246.191,-23.7814,-249.128	1/1:95:0,95,0:0:0:95,0:3345,0:-299.913,-28.5979,0,-299.913,-28.5979,-299.913	1/1:46:0,46,0:0:0:46,0:1619,0:-145.449,-13.8474,0,-145.449,-13.8474,-145.449	1/1:62:1,61,0:1:31:61,0:2138,0:-188.721,-15.5644,0,-189.022,-18.3628,-191.509	1/2:113:2,60,50:2:63:60,50:2094,1764:-298.907,-130.065,-117.068,-164.416,0,-154.429	1/2:79:0,41,38:0:0:41,38:1439,1347:-221.285,-104.58,-92.2378,-117.049,0,-105.61	1/2:89:1,37,51:1:25:37,51:1276,1790:-237.973,-135.355,-126.164,-101.058,0,-87.6521	1/2:74:0,43,31:0:0:43,31:1518,1102:-207.597,-84.77,-71.8257,-123.169,0,-113.837	1/1:82:0,82,0:0:0:82,0:2858,0:-256.406,-24.6845,0,-256.406,-24.6845,-256.406	1/1:40:1,38,0:1:23:38,0:1339,0:-118.06,-9.72802,0,-118.362,-11.4391,-120.127	1/2:36:0,19,17:0:0:19,17:680,609:-103.245,-47.8702,-42.1506,-55.7251,0,-50.6076	1/1:24:0,24,0:0:0:24,0:843,0:-75.6983,-7.22472,0,-75.6983,-7.22472,-75.6983	1/1:100:0,100,0:0:0:100,0:3524,0:-316.273,-30.103,0,-316.273,-30.103,-316.273	1/2:133:0,63,68:0:0:63,68:2232,2361:-361.067,-179.755,-160.791,-181.397,0,-160.927	1/2:113:0,35,78:0:0:35,78:1230,2747:-308.634,-208.853,-198.317,-100.126,0,-76.6452	1/1:142:2,140,0:2:54:140,0:4925,0:-436.105,-37.6167,0,-436.707,-42.1442,-440.964	1/2:84:0,43,41:0:0:43,41:1506,1437:-229.846,-107.957,-95.0123,-122.226,0,-109.884	1/1:71:1,68,0:1:26:68,0:2361,0:-209.35,-18.4575,0,-209.651,-20.47,-211.689	1/1:182:1,180,0:1:30:180,0:6363,0:-567.475,-51.7702,0,-567.776,-54.1854,-570.174	1/2:216:1,117,97:1:30:117,97:4127,3417:-589.751,-255.9,-223.078,-331.761,0,-304.959	1/1:33:0,32,0:0:0:32,0:1124,0:-100.653,-9.63296,0,-100.653,-9.63296,-100.653	1/1:194:1,192,0:1:29:192,0:6815,0:-608.718,-55.4586,0,-609.019,-57.7978,-611.327	1/1:128:0,128,0:0:0:128,0:4521,0:-405.283,-38.5318,0,-405.283,-38.5318,-405.283	1/2:116:0,56,60:0:0:56,60:1960,2103:-321.424,-162.757,-145.899,-159.009,0,-140.947	1/1:5:0,5,0:0:0:5,0:180,0:-16.5125,-1.50515,0,-16.5125,-1.50515,-16.5125	1/1:15:0,15,0:0:0:15,0:524,0:-47.3882,-4.51545,0,-47.3882,-4.51545,-47.3882	1/2:4:0,1,3:0:0:1,3:36,103:-11.202,-8.3906,-8.08957,-3.15346,0,-2.25037	1/2:5:0,3,2:0:0:3,2:104,71:-14.3362,-5.89137,-4.98828,-8.78828,0,-8.18622	1/1:9:0,9,0:0:0:9,0:320,0:-29.1046,-2.70927,0,-29.1046,-2.70927,-29.1046	1/2:216:1,103,112:1:24:103,112:3628,3965:-591.145,-297.332,-268.184,-292.357,0,-260.499	1/2:158:0,78,80:0:0:78,80:2727,2807:-435.803,-215.124,-191.644,-220.663,0,-196.581	1/1:46:0,46,0:0:0:46,0:1564,0:-140.864,-13.8474,0,-140.864,-13.8474,-140.864	1/2:5:0,3,2:0:0:3,2:104,69:-14.0794,-5.63784,-4.73475,-8.77688,0,-8.17482	1/2:78:0,44,34:0:0:44,34:1550,1206:-217.256,-91.8299,-78.5845,-125.411,0,-115.176	1/1:27:0,27,0:0:0:27,0:926,0:-83.394,-8.12781,0,-83.394,-8.12781,-83.394	1/1:145:0,143,0:0:0:143,0:5036,0:-451.768,-43.0473,0,-451.768,-43.0473,-451.768	1/1:48:0,48,0:0:0:48,0:1692,0:-152.223,-14.4494,0,-152.223,-14.4494,-152.223	1/2:56:0,21,34:0:0:21,34:726,1156:-147.603,-88.9002,-82.5785,-58.7585,0,-48.5235	1/1:91:0,91,0:0:0:91,0:3195,0:-287.083,-27.3937,0,-287.083,-27.3937,-287.083	1/2:102:0,55,47:0:0:55,47:1935,1653:-286.289,-129.266,-112.709,-157.367,0,-143.219	1/2:151:0,51,100:0:0:51,100:1770,3502:-413.609,-270.643,-255.29,-143.308,0,-113.205	1/1:77:1,74,0:1:30:74,0:2632,0:-233.178,-19.8916,0,-233.479,-22.2762,-235.875	1/2:79:0,48,31:0:0:48,31:1666,1090:-218.789,-83.9423,-69.4928,-135.185,0,-125.853	1/1:131:1,130,0:1:29:130,0:4555,0:-405.681,-36.5353,0,-405.982,-39.1339,-408.29	1/1:3:0,3,0:0:0:3,0:99,0:-9.21862,-0.90309,0,-9.21862,-0.90309,-9.21862	1/2:92:0,41,51:0:0:41,51:1454,1817:-258.864,-140.947,-128.604,-118.264,0,-102.912	1/1:64:1,63,0:1:30:63,0:2223,0:-196.35,-16.2664,0,-196.651,-18.9649,-199.049	1/1:3:0,3,0:0:0:3,0:104,0:-9.69137,-0.90309,0,-9.69137,-0.90309,-9.69137	1/1:85:0,85,0:0:0:85,0:3019,0:-270.979,-25.5876,0,-270.979,-25.5876,-270.979	1/1:42:0,42,0:0:0:42,0:1468,0:-131.559,-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chr01	1167055	.	A	G	26623.6	PASS	AB=0.575188;ABP=133.625;AC=41;AF=0.22043;AN=186;AO=1543;CIGAR=1X;DP=5228;DPB=5228;DPRA=1.46123;EPP=3353.59;EPPR=8004.89;GTI=5;LEN=1;MEANALT=1;MQM=59.9994;MQMR=59.9995;NS=93;NUMALT=1;ODDS=0.451824;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55129;QR=130002;RO=3685;RPL=0;RPP=3353.59;RPPR=8004.89;RPR=1543;RUN=1;SAF=1543;SAP=3353.59;SAR=0;SRF=3685;SRP=8004.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1060:0:0:0,-9.0309,-95.7113	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:71:71,0:71:2505:0:0:0,-21.3731,-225.702	0/0:147:147,0:147:5186:0:0:0,-44.2514,-466.885	0/0:38:38,0:38:1330:0:0:0,-11.4391,-119.996	0/0:34:33,1:33:1168:1:36:0,-6.63674,-101.829	0/0:59:59,0:59:2072:0:0:0,-17.7608,-186.752	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:62:62,0:62:2166:0:0:0,-18.6639,-195.204	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.461	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/1:67:23,44:23:812:44:1584:-122.683,0,-53.2319	0/1:46:19,27:19:684:27:972:-73.9505,0,-48.0429	0/1:58:28,30:28:996:30:1076:-79.6931,0,-72.4951	0/1:68:23,45:23:820:45:1601:-123.908,0,-53.6525	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:56:56,0:56:1977:0:0:0,-16.8577,-178.203	0/1:54:29,25:29:1008:25:896:-64.7047,0,-74.7725	0/1:116:40,76:40:1397:76:2690:-207.423,0,-91.1056	0/0:53:53,0:53:1861:0:0:0,-15.9546,-167.768	0/1:22:4,18:4:140:18:644:-51.6679,0,-6.32192	0/0:52:52,0:52:1840:0:0:0,-15.6536,-165.88	0/0:146:146,0:146:5142:0:0:0,-43.9504,-462.928	0/1:100:53,47:53:1869:47:1664:-119.942,0,-138.384	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:130:130,0:130:4571:0:0:0,-39.1339,-411.559	0/0:72:71,1:71:2493:1:36:0,-18.0759,-221.025	0/1:95:51,44:51:1824:44:1557:-111.822,0,-135.843	.:.:.:.:.:.:.:.	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:130:64,66:64:2280:66:2364:-173.884,0,-166.328	0/1:82:30,52:30:1064:52:1851:-142.185,0,-71.3872	0/0:38:38,0:38:1329:0:0:0,-11.4391,-119.908	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:74:26,48:26:928:48:1721:-132.899,0,-61.562	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:58:58,0:58:2038:0:0:0,-17.4597,-183.689	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:28:11,17:11:388:17:612:-46.9846,0,-26.8285	0/0:61:61,0:61:2141:0:0:0,-18.3628,-192.957	0/1:75:22,53:22:776:53:1900:-148.701,0,-47.5849	0/1:95:31,64:31:1100:64:2289:-177.672,0,-70.7124	0/0:68:68,0:68:2397:0:0:0,-20.47,-215.987	0/1:69:36,33:36:1268:33:1184:-86.0972,0,-93.6516	0/0:80:80,0:80:2833:0:0:0,-24.0824,-255.209	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:186:94,92:94:3292:92:3292:-240.508,0,-240.506	0/0:37:37,0:37:1304:0:0:0,-11.1381,-117.661	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:60:60,0:60:2124:0:0:0,-18.0618,-191.429	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:11:11,0:11:369:0:0:0,-3.31133,-33.5326	0/0:31:31,0:31:1089:0:0:0,-9.33193,-98.3173	0/1:94:44,50:44:1568:50:1777:-131.914,0,-113.115	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:71:35,36:35:1210:36:1277:-93.858,0,-87.8258	0/1:76:34,42:34:1204:42:1504:-112.776,0,-85.7876	0/0:58:55,3:55:1937:3:108:0,-7.38457,-164.53	0/0:45:45,0:45:1569:0:0:0,-13.5463,-141.499	0/1:82:42,40:42:1481:40:1440:-105.213,0,-108.898	0/0:129:125,4:125:4371:4:129:0,-26.9052,-381.642	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:43:43,0:43:1484:0:0:0,-12.9443,-133.85	0/1:63:26,37:26:928:37:1331:-101.128,0,-64.8734	0/1:15:7,8:7:244:8:288:-21.752,0,-17.784	0/1:124:57,67:57:2020:67:2393:-178.299,0,-144.745	0/1:54:32,22:32:1125:22:780:-54.2674,0,-85.3004	0/0:61:61,0:61:2153:0:0:0,-18.3628,-194.036	0/1:135:52,83:52:1821:83:2980:-227.793,0,-123.53	0/0:139:139,0:139:4899:0:0:0,-41.8432,-441.065	0/0:29:29,0:29:1013:0:0:0,-8.72987,-91.4794	0/0:10:10,0:10:322:0:0:0,-3.0103,-29.2912	0/0:67:65,2:65:2256:2:68:0,-13.7113,-196.84	0/1:44:15,29:15:540:29:1044:-81.0295,0,-35.6912	0/1:118:47,71:47:1653:71:2540:-193.33,0,-113.534	0/1:37:17,20:17:600:20:720:-53.9907,0,-43.1911	0/1:66:16,50:16:576:50:1785:-141.063,0,-32.307	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	0/1:85:39,46:39:1392:46:1644:-122.661,0,-99.9915	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:38:16,22:16:572:22:788:-59.8057,0,-40.3743	0/1:105:37,68:37:1320:68:2431:-187.437,0,-87.4938	0/1:34:8,26:8:276:26:917:-72.6096,0,-14.9402	0/0:51:51,0:51:1788:0:0:0,-15.3525,-161.202	0/0:48:48,0:48:1685:0:0:0,-14.4494,-151.934
chr01	1218271	.	T	C	24004.4	PASS	AB=0.430571;ABP=152.567;AC=36;AF=0.193548;AN=186;AO=1556;CIGAR=1X;DP=8536;DPB=8536;DPRA=1.20392;EPP=3373.14;EPPR=15155.5;GTI=0;LEN=1;MEANALT=1.02222;MQM=57.3605;MQMR=59.5317;NS=93;NUMALT=1;ODDS=2.19411;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55336;QR=249521;RO=6978;RPL=0;RPP=3381.82;RPPR=15155.5;RPR=1556;RUN=1;SAF=1;SAP=3373.14;SAR=1555;SRF=0;SRP=15155.5;SRR=6978;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.4977	0/0:182:181,0:181:6469:0:0:0,-54.4864,-581.883	0/0:77:77,0:77:2748:0:0:0,-23.1793,-247.555	0/0:192:192,0:192:6872:0:0:0,-57.7978,-617.731	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:33:33,0:33:1179:0:0:0,-9.93399,-106.022	0/0:113:113,0:113:4056:0:0:0,-34.0164,-363.746	0/0:182:182,0:182:6512:0:0:0,-54.7875,-586.047	0/0:93:93,0:93:3324:0:0:0,-27.9958,-299.128	0/0:182:182,0:182:6511:0:0:0,-54.7875,-585.625	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.772	0/1:64:48,16:48:1724:16:572:-32.2796,0,-136.141	0/1:54:37,17:37:1320:17:596:-37.4689,0,-102.821	0/1:62:42,20:42:1478:20:689:-43.4679,0,-114.615	0/1:61:44,17:44:1584:17:604:-36.3149,0,-124.472	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.466	0/0:70:70,0:70:2479:0:0:0,-21.0721,-223.331	0/1:42:31,11:31:1091:11:396:-23.3367,0,-85.8551	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.822	0/0:249:249,0:249:8920:0:0:0,-74.9565,-802.458	0/1:130:62,68:62:2224:68:2422:-178.888,0,-161.263	0/1:114:28,86:28:1008:86:3041:-238.873,0,-56.7013	0/0:80:79,1:79:2819:1:36:0,-20.5036,-250.305	0/1:85:57,28:57:2044:28:987:-63.3443,0,-158.236	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.173	0/0:504:504,0:504:18032:0:0:0,-151.719,-1622.08	0/1:170:100,70:100:3584:70:2484:-171.251,0,-271.57	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.688	0/0:238:238,0:238:8531:0:0:0,-71.6451,-767.473	0/0:120:119,1:119:4248:1:36:0,-32.6026,-378.924	0/1:116:61,55:61:2176:55:1923:-137.774,0,-161.092	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1742	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1846	0/1:3:1,2:1:36:2:72:-5.93279,0,-2.69518	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:190:132,58:132:4714:58:2060:-128.386,0,-367.192	0/1:192:112,80:112:4004:80:2849:-198.532,0,-302.574	0/0:54:53,1:53:1887:1:36:0,-12.7749,-166.607	.:.:.:.:.:.:.:.	0/1:111:55,56:55:1964:56:1977:-144.5,0,-143.598	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.059	0/0:134:134,0:134:4773:0:0:0,-40.338,-429.67	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.009	0/1:55:36,19:36:1296:19:684:-45.2248,0,-100.339	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.272	0/1:114:63,50:63:2256:50:1784:-126.194,0,-168.311	0/1:133:70,63:70:2504:63:2260:-163.028,0,-185.502	0/0:137:137,0:137:4883:0:0:0,-41.2411,-439.478	0/1:135:83,52:83:2980:52:1872:-128.025,0,-227.775	0/0:157:157,0:157:5615:0:0:0,-47.2617,-505.447	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2662	0/1:98:43,55:43:1544:55:1949:-146.046,0,-109.741	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6698	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1742	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.278	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.13	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8899	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.497	0/1:91:63,28:63:2260:28:987:-61.7306,0,-176.214	0/1:8:4,4:4:144:4:144:-10.7934,0,-10.9054	0/0:108:99,9:99:3523:9:324:0,-3.06445,-287.832	0/1:196:103,93:103:3691:93:3303:-238.138,0,-273.353	0/0:79:79,0:79:2816:0:0:0,-23.7814,-253.669	0/0:49:48,1:48:1704:1:36:0,-11.1548,-149.941	0/1:160:88,72:88:3160:72:2571:-183.214,0,-236.437	0/0:115:113,2:113:4044:2:72:0,-27.7887,-356.799	0/0:16:16,0:16:554:0:0:0,-4.81648,-50.1668	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.516	0/1:80:52,28:52:1872:28:995:-65.3178,0,-144.676	0/1:18:8,10:8:288:10:356:-26.7541,0,-20.8489	0/1:87:52,35:52:1864:35:1246:-83.2047,0,-141.832	0/1:59:38,21:38:1356:21:737:-48.5972,0,-104.56	0/0:160:159,1:159:5700:1:36:0,-44.567,-509.437	0/1:114:66,48:66:2376:48:1720:-120.003,0,-179.65	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.578	0/0:143:143,0:143:5108:0:0:0,-43.0473,-459.789	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.329	0/1:102:47,55:47:1688:55:1955:-144.976,0,-121.339	0/1:244:102,142:102:3627:142:5047:-379.92,0,-253.109	0/1:87:53,34:53:1892:34:1211:-83.0097,0,-144.286	0/1:50:36,14:36:1296:14:495:-29.3476,0,-101.855	0/1:75:44,31:44:1576:31:1112:-77.7561,0,-119.554	0/1:159:110,49:110:3931:49:1760:-110.733,0,-305.462	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.147	0/0:105:105,0:105:3740:0:0:0,-31.6081,-336.702	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.214	0/0:27:27,0:27:952:0:0:0,-8.12781,-85.5713	0/1:55:39,16:39:1400:16:572:-35.0558,0,-109.707	0/1:58:23,35:23:820:35:1256:-95.7489,0,-56.6265	0/0:116:115,1:115:4098:1:36:0,-31.333,-365.271	0/0:152:151,1:151:5411:1:36:0,-42.2759,-483.547
chr01	1218280	.	C	T	154051	PASS	AB=0.571507;ABP=163.877;AC=150;AF=0.806452;AN=186;AO=7091;CIGAR=1X;DP=8663;DPB=8663;DPRA=0;EPP=15193.2;EPPR=3366.76;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.5135;MQMR=57.4946;NS=93;NUMALT=1;ODDS=1.83235;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253960;QR=56107;RO=1569;RPL=7067;RPP=15193.2;RPPR=3366.76;RPR=24;RUN=1;SAF=0;SAP=15400.9;SAR=7091;SRF=0;SRP=3410.05;SRR=1569;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:680:-61.5059,-5.71957,0	1/1:188:0,188:0:0:188:6732:-605.825,-56.5936,0	1/1:77:1,76:1:36:76:2709:-240.429,-19.581,0	1/1:193:0,193:0:0:193:6905:-620.989,-58.0988,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:33:0,33:0:0:33:1173:-105.721,-9.93399,0	1/1:112:0,112:0:0:112:4024:-360.867,-33.7154,0	1/1:187:0,187:0:0:187:6689:-601.98,-56.2926,0	1/1:94:0,94:0:0:94:3380:-304.12,-28.2968,0	1/1:180:0,180:0:0:180:6425:-577.906,-54.1854,0	1/1:46:1,45:1:36:45:1616:-142.015,-10.2491,0	0/1:64:16,48:16:576:48:1728:-136.503,0,-32.6374	0/1:53:17,35:17:608:35:1256:-97.3063,0,-38.685	0/1:64:21,43:21:739:43:1548:-120.312,0,-47.312	0/1:63:17,46:17:612:46:1656:-130.347,0,-36.434	1/1:50:0,50:0:0:50:1785:-160.894,-15.0515,0	1/1:69:0,69:0:0:69:2467:-222.254,-20.7711,0	0/1:42:11,31:11:396:31:1108:-87.3873,0,-23.3367	1/1:41:0,41:0:0:41:1472:-132.653,-12.3422,0	1/1:252:0,252:0:0:252:9037:-812.962,-75.8596,0	0/1:131:66,65:66:2349:65:2336:-171.047,0,-172.022	0/1:114:87,27:87:3116:27:968:-53.1023,0,-245.52	1/1:81:0,81:0:0:81:2885:-259.803,-24.3834,0	0/1:87:29,58:29:1040:58:2076:-160.884,0,-67.5114	1/1:49:0,49:0:0:49:1756:-158.295,-14.7505,0	1/1:519:0,517:0:0:517:18485:-1662.48,-155.633,0	0/1:175:72,103:72:2580:103:3696:-280.139,0,-178.278	1/1:40:0,40:0:0:40:1432:-129.159,-12.0412,0	1/1:243:0,243:0:0:243:8712:-783.746,-73.1503,0	1/1:127:0,127:0:0:127:4539:-408.561,-38.2308,0	0/1:118:55,63:55:1960:63:2252:-167.298,0,-139.589	1/1:5:0,5:0:0:5:175:-16.0847,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5517,-1.50515,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93279	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:190:59,131:59:2112:131:4708:-366.65,0,-133.018	0/1:196:81,115:81:2892:115:4120:-311.822,0,-201.197	1/1:56:0,56:0:0:56:2012:-181.191,-16.8577,0	.:.:.:.:.:.:.:.	0/1:113:55,58:55:1955:58:2067:-152.271,0,-141.937	1/1:40:0,40:0:0:40:1436:-129.536,-12.0412,0	1/1:135:0,135:0:0:135:4817:-433.634,-40.6391,0	1/1:93:0,93:0:0:93:3344:-300.982,-27.9958,0	0/1:57:19,38:19:684:38:1364:-105.839,0,-44.6228	1/1:96:0,96:0:0:96:3434:-309.221,-28.8989,0	0/1:119:51,68:51:1824:68:2440:-183.206,0,-128.316	0/1:134:65,69:65:2324:69:2480:-183.041,0,-168.765	1/1:139:0,139:0:0:139:4976:-447.824,-41.8432,0	0/1:141:55,86:55:1976:86:3073:-234.316,0,-135.574	1/1:160:0,160:0:0:160:5738:-516.453,-48.1648,0	1/1:8:0,8:0:0:8:288:-26.2662,-2.40824,0	0/1:102:57,45:57:2044:45:1612:-114.654,0,-153.324	1/1:31:0,31:0:0:31:1093:-98.6769,-9.33193,0	1/1:18:0,18:0:0:18:644:-58.29,-5.41854,0	1/1:81:0,81:0:0:81:2889:-260.177,-24.3834,0	1/1:34:0,34:0:0:34:1216:-109.729,-10.235,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:19:0,19:0:0:19:684:-61.8899,-5.71957,0	1/1:68:0,68:0:0:68:2440:-219.852,-20.47,0	0/1:92:27,65:27:972:65:2336:-182.75,0,-60.0775	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.7934	1/1:106:8,98:8:288:98:3524:-291.157,-5.70052,0	0/1:199:93,106:93:3318:106:3816:-283.694,0,-238.492	1/1:78:1,77:1:36:77:2768:-245.745,-19.8821,0	1/1:48:1,47:1:36:47:1684:-148.142,-10.8538,0	0/1:162:74,88:74:2648:88:3156:-235.492,0,-189.503	1/1:115:2,113:2:72:113:4034:-355.897,-27.7887,0	1/1:18:0,18:0:0:18:648:-58.6334,-5.41854,0	1/1:92:0,92:0:0:92:3263:-293.549,-27.6948,0	0/1:80:28,52:28:996:52:1849:-142.605,0,-65.6099	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.0133	0/1:87:36,51:36:1296:51:1832:-138.953,0,-86.7648	0/1:60:19,41:19:684:41:1464:-113.985,0,-43.6995	1/1:161:1,160:1:32:160:5708:-510.144,-45.2667,0	0/1:115:49,66:49:1748:66:2372:-178.99,0,-122.22	1/1:57:1,56:1:36:56:2007:-177.274,-13.5604,0	1/1:146:0,146:0:0:146:5224:-470.223,-43.9504,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:61:1,60:1:36:60:2160:-191.048,-14.7646,0	0/1:106:57,49:57:2025:49:1764:-126.972,0,-150.266	0/1:243:140,103:140:5018:103:3687:-258.846,0,-377.873	0/1:90:34,56:34:1211:56:1992:-152.379,0,-82.1066	0/1:50:14,36:14:500:36:1294:-101.682,0,-29.8021	0/1:75:29,46:29:1040:46:1656:-126.715,0,-71.3165	0/1:158:50,108:50:1784:108:3880:-301.801,0,-113.195	1/1:46:0,46:0:0:46:1655:-149.144,-13.8474,0	1/1:105:0,105:0:0:105:3776:-339.94,-31.6082,0	1/1:89:0,89:0:0:89:3196:-287.86,-26.7917,0	1/1:29:0,29:0:0:29:1036:-93.0269,-8.72987,0	0/1:55:17,38:17:604:38:1368:-106.793,0,-37.9327	0/1:58:35,23:35:1256:23:824:-56.9873,0,-95.7466	1/1:117:0,117:0:0:117:4162:-374.591,-35.2205,0	1/1:152:1,151:1:36:151:5420:-484.03,-42.1583,0
chr01	1342287	.	ATTG	ATTT,ATTTT	127774	PASS	AB=0.482745,0.511503;ABP=9.75452,6.00773;AC=149,39;AF=0.792553,0.207447;AN=188;AO=4519,1344;CIGAR=3M1X,1M1I2M1X;DP=5889;DPB=6228.75;DPRA=0,1.41693;EPP=9634.34,2895.47;EPPR=0;GTI=1;LEN=1,5;MEANALT=1.75532,2.375;MQM=59.8126,46.8616;MQMR=0;NS=94;NUMALT=2;ODDS=0.0159875;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=161835,47562;QR=0;RO=0;RPL=21,3;RPP=9634.34,2895.47;RPPR=0;RPR=4498,1341;RUN=1,1;SAF=4519,1344;SAP=9815.89,2921.47;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:91:0,91,0:0:0:91,0:3268,0:-294.28,-27.3937,0,-294.28,-27.3937,-294.28	1/1:86:0,86,0:0:0:86,0:3060,0:-275.603,-25.8886,0,-275.603,-25.8886,-275.603	1/1:112:0,110,0:0:0:110,0:3938,0:-354.241,-33.1133,0,-354.241,-33.1133,-354.241	1/1:75:0,75,0:0:0:75,0:2662,0:-239.797,-22.5773,0,-239.797,-22.5773,-239.797	1/1:83:0,83,0:0:0:83,0:2970,0:-267.518,-24.9855,0,-267.518,-24.9855,-267.518	1/1:89:0,89,0:0:0:89,0:3174,0:-285.807,-26.7917,0,-285.807,-26.7917,-285.807	1/1:188:0,188,0:0:0:188,0:6732,0:-605.91,-56.5936,0,-605.91,-56.5936,-605.91	1/1:36:0,35,0:0:0:35,0:1252,0:-112.732,-10.5361,0,-112.732,-10.5361,-112.732	1/1:70:0,70,0:0:0:70,0:2493,0:-224.615,-21.0721,0,-224.615,-21.0721,-224.615	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:40:0,20,20:0:0:20,20:720,689:-113.345,-54.5853,-48.5647,-59.1066,0,-53.086	1/2:27:0,20,7:0:0:20,7:716,234:-77.4651,-19.064,-13.0434,-58.7389,0,-56.6317	1/2:33:0,14,19:0:0:14,19:489,665:-93.4521,-53.6751,-49.4607,-40.1245,0,-34.4049	1/2:21:0,10,11:0:0:10,11:360,395:-61.6241,-32.2839,-29.2736,-29.6979,0,-26.3866	1/1:35:0,35,0:0:0:35,0:1260,0:-113.669,-10.5361,0,-113.669,-10.5361,-113.669	1/1:25:0,25,0:0:0:25,0:892,0:-80.5989,-7.52575,0,-80.5989,-7.52575,-80.5989	1/2:30:0,18,12:0:0:18,12:635,431:-86.9242,-35.2521,-29.8335,-52.0271,0,-48.4147	1/1:16:0,16,0:0:0:16,0:576,0:-51.8013,-4.81648,0,-51.8013,-4.81648,-51.8013	1/1:149:0,149,0:0:0:149,0:5341,0:-480.804,-44.8535,0,-480.804,-44.8535,-480.804	1/2:78:0,38,40:0:0:38,40:1368,1431:-227.816,-116.194,-104.755,-111.979,0,-99.9381	1/2:82:0,41,41:0:0:41,41:1463,1441:-234.254,-114.983,-102.64,-119.622,0,-107.28	1/1:61:0,59,1:0:0:59,1:2124,35:-191.075,-17.7608,0,-188.25,-14.9418,-187.949	1/2:106:0,56,49:0:0:56,49:2007,1740:-303.244,-139.566,-122.709,-163.688,0,-148.937	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:258:0,256,1:0:0:256,1:9177,36:-825.588,-77.0637,0,-822.686,-74.089,-822.385	1/2:119:0,54,65:0:0:54,65:1936,2294:-343.409,-185.505,-169.25,-158.258,0,-138.691	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:164:0,164,0:0:0:164,0:5841,0:-525.789,-49.3689,0,-525.789,-49.3689,-525.789	1/1:173:0,172,0:0:0:172,0:6164,0:-554.585,-51.7772,0,-554.585,-51.7772,-554.585	1/2:96:0,53,43:0:0:53,43:1900,1518:-276.616,-121.648,-105.694,-155.32,0,-142.375	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:3:0,1,2:0:0:1,2:36,71:-8.96636,-6.02527,-5.72424,-3.29724,0,-2.69518	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:80:0,44,36:0:0:44,36:1584,1275:-231.168,-101.918,-88.673,-129.603,0,-118.765	1/2:150:0,46,103:0:0:46,103:1648,3652:-428.841,-294.522,-280.675,-134.373,0,-103.367	1/1:22:0,22,0:0:0:22,0:783,0:-70.7645,-6.62266,0,-70.7645,-6.62266,-70.7645	1/2:11:0,4,7:0:0:4,7:140,251:-32.0642,-20.6762,-19.4721,-11.74,0,-9.63283	1/2:71:0,42,29:0:0:42,29:1508,1034:-206.145,-83.1281,-70.4849,-123.371,0,-114.641	1/1:15:0,15,0:0:0:15,0:540,0:-48.9356,-4.51545,0,-48.9356,-4.51545,-48.9356	1/1:73:0,72,0:0:0:72,0:2576,0:-231.783,-21.6742,0,-231.783,-21.6742,-231.783	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:20:0,13,7:0:0:13,7:468,250:-58.7353,-20.5485,-16.6351,-38.5429,0,-36.4357	1/1:71:0,71,0:0:0:71,0:2548,0:-229.57,-21.3731,0,-229.57,-21.3731,-229.57	1/2:113:0,44,69:0:0:44,69:1571,2433:-324.579,-196.498,-183.253,-128.435,0,-107.664	1/2:134:0,72,59:0:0:72,59:2580,2094:-379.484,-169.067,-147.392,-210.416,0,-192.655	1/1:64:0,64,0:0:0:64,0:2300,0:-207.254,-19.2659,0,-207.254,-19.2659,-207.254	1/2:72:0,29,43:0:0:29,43:1044,1513:-207.224,-122.034,-113.304,-85.5449,0,-72.6006	1/1:107:0,106,1:0:0:106,1:3804,36:-340.751,-31.9092,0,-337.849,-28.6516,-337.548	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:88:0,40,48:0:0:40,48:1431,1692:-253.81,-137.118,-125.077,-117.046,0,-102.596	1/1:47:0,47,0:0:0:47,0:1688,0:-152.202,-14.1484,0,-152.202,-14.1484,-152.202	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:63:0,61,1:0:0:61,1:2188,35:-196.854,-18.3628,0,-194.024,-15.514,-193.723	1/1:46:0,46,0:0:0:46,0:1652,0:-148.968,-13.8474,0,-148.968,-13.8474,-148.968	1/1:14:0,14,0:0:0:14,0:504,0:-45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chr01	1342321	.	T	A,G	121342	PASS	AB=0.474104,0.525498;ABP=17.631,17.1846;AC=149,39;AF=0.792553,0.207447;AN=188;AO=4332,1329;CIGAR=1X,1X;DP=5664;DPB=5664;DPRA=0,1.42882;EPP=9409.83,2888.9;EPPR=7.35324;GTI=1;LEN=1,1;MEANALT=1.51064,2;MQM=59.8077,47.0579;MQMR=51;NS=94;NUMALT=2;ODDS=0.118058;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=154092,47275;QR=72;RO=2;RPL=4332,1329;RPP=9409.83,2888.9;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=4332,1329;SAP=9409.83,2888.9;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:91:0,90,0:0:0:90,0:3185,0:-286.61,-27.0927,0,-286.61,-27.0927,-286.61	1/1:84:0,84,0:0:0:84,0:3000,0:-270.207,-25.2865,0,-270.207,-25.2865,-270.207	1/1:109:0,109,0:0:0:109,0:3837,0:-345.503,-32.8123,0,-345.503,-32.8123,-345.503	1/1:75:0,75,0:0:0:75,0:2651,0:-238.823,-22.5773,0,-238.823,-22.5773,-238.823	1/1:80:0,80,0:0:0:80,0:2837,0:-255.556,-24.0824,0,-255.556,-24.0824,-255.556	1/1:85:0,85,0:0:0:85,0:3007,0:-270.79,-25.5876,0,-270.79,-25.5876,-270.79	1/1:181:0,181,0:0:0:181,0:6448,0:-580.369,-54.4864,0,-580.369,-54.4864,-580.369	1/1:36:0,36,0:0:0:36,0:1284,0:-115.862,-10.8371,0,-115.862,-10.8371,-115.862	1/1:63:0,63,0:0:0:63,0:2237,0:-201.582,-18.9649,0,-201.582,-18.9649,-201.582	1/1:14:0,14,0:0:0:14,0:485,0:-43.977,-4.21442,0,-43.977,-4.21442,-43.977	1/2:38:0,20,18:0:0:20,18:716,644:-109.83,-51.4374,-45.4168,-58.7456,0,-53.327	1/2:26:0,20,6:0:0:20,6:716,212:-75.7847,-17.3969,-11.3763,-58.7389,0,-56.9327	1/2:30:0,11,19:0:0:11,19:396,676:-86.8265,-54.5114,-51.2001,-32.6714,0,-26.9518	1/2:21:0,10,11:0:0:10,11:360,384:-60.6727,-31.3281,-28.3178,-29.6979,0,-26.3866	1/1:32:0,32,0:0:0:32,0:1144,0:-103.269,-9.63296,0,-103.269,-9.63296,-103.269	1/1:22:0,22,0:0:0:22,0:784,0:-70.8824,-6.62266,0,-70.8824,-6.62266,-70.8824	1/2:26:0,14,12:0:0:14,12:500,428:-75.6852,-34.9891,-30.7747,-41.0513,0,-37.4389	1/1:16:0,16,0:0:0:16,0:558,0:-50.174,-4.81648,0,-50.174,-4.81648,-50.174	1/1:147:1,146,0:1:36:146,0:5197,0:-464.256,-40.6531,0,-464.557,-43.9504,-467.494	1/2:80:0,39,41:0:0:39,41:1392,1459:-231.738,-118.438,-106.698,-113.656,0,-101.313	1/2:76:0,37,39:0:0:37,39:1309,1400:-218.304,-111.685,-100.547,-106.971,0,-95.2309	1/1:59:0,57,2:0:0:57,2:2029,72:-182.52,-17.1587,0,-176.674,-10.9539,-176.072	1/2:103:1,55,47:1:36:55,47:1960,1680:-292.165,-132.715,-119.01,-156.904,0,-145.607	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:250:0,249,1:0:0:249,1:8912,21:-801.825,-74.9565,0,-800.238,-73.1589,-799.937	1/2:111:0,49,62:0:0:49,62:1764,2197:-321.485,-177.55,-162.8,-144.291,0,-125.627	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:161:0,161,0:0:0:161,0:5736,0:-516.353,-48.4658,0,-516.353,-48.4658,-516.353	1/1:171:0,171,0:0:0:171,0:6007,0:-540.67,-51.4761,0,-540.67,-51.4761,-540.67	1/2:90:0,49,41:0:0:49,41:1741,1467:-259.301,-117.46,-102.709,-142.194,0,-129.851	1/1:21:0,21,0:0:0:21,0:748,0:-67.6453,-6.32163,0,-67.6453,-6.32163,-67.6453	1/1:12:0,12,0:0:0:12,0:417,0:-37.8602,-3.61236,0,-37.8602,-3.61236,-37.8602	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:3:0,1,2:0:0:1,2:36,72:-9.03915,-6.09936,-5.79833,-3.29724,0,-2.69518	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:74:0,40,34:0:0:40,34:1436,1216:-214.353,-97.2146,-85.1734,-117.493,0,-107.258	1/2:146:0,42,104:0:0:42,104:1500,3698:-420.907,-298.612,-285.969,-122.65,0,-91.3433	1/1:22:0,22,0:0:0:22,0:788,0:-71.2163,-6.62266,0,-71.2163,-6.62266,-71.2163	1/2:11:0,3,8:0:0:3,8:108,288:-32.5129,-23.7005,-22.7974,-9.17166,0,-6.76342	1/2:67:0,37,30:0:0:37,30:1324,1076:-194.551,-86.5824,-75.4443,-108.324,0,-99.2931	1/1:15:0,15,0:0:0:15,0:536,0:-48.5739,-4.51545,0,-48.5739,-4.51545,-48.5739	1/1:72:0,72,0:0:0:72,0:2580,0:-232.414,-21.6742,0,-232.414,-21.6742,-232.414	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/2:18:0,12,6:0:0:12,6:428,216:-52.6978,-17.8113,-14.1989,-35.2431,0,-33.4369	1/1:69:0,69,0:0:0:69,0:2465,0:-222.102,-20.7711,0,-222.102,-20.7711,-222.102	1/2:112:0,43,69:0:0:43,69:1506,2453:-320.709,-198.175,-185.231,-122.885,0,-102.114	1/2:124:0,65,59:0:0:65,59:2294,2111:-357.646,-170.852,-151.285,-187.147,0,-169.387	1/1:62:0,62,0:0:0:62,0:2192,0:-197.537,-18.6639,0,-197.537,-18.6639,-197.537	1/2:68:0,26,42:0:0:26,42:932,1500:-197.363,-121.348,-113.521,-76.3721,0,-63.7288	1/1:108:0,107,1:0:0:107,1:3809,36:-341.201,-32.2102,0,-338.3,-28.9526,-337.999	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:88:0,40,48:0:0:40,48:1432,1705:-254.991,-138.212,-126.171,-117.134,0,-102.685	1/1:46:0,46,0:0:0:46,0:1652,0:-148.967,-13.8474,0,-148.967,-13.8474,-148.967	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:61:0,60,1:0:0:60,1:2148,32:-193.263,-18.0618,0,-190.695,-15.1736,-190.394	1/1:40:0,40,0:0:0:40,0:1420,0:-128.097,-12.0412,0,-128.097,-12.0412,-128.097	1/1:14:0,14,0:0:0:14,0:500,0:-45.3362,-4.21442,0,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chr01	1348613	.	GATTC	AATTA,GATTA	160057	PASS	AB=0.49366,0.503686;ABP=4.19433,3.41053;AC=147,39;AF=0.790323,0.209677;AN=186;AO=5783,1714;CIGAR=1X3M1X,4M1X;DP=7518;DPB=7518;DPRA=0,1.29289;EPP=12560.6,3724.91;EPPR=7.35324;GTI=0;LEN=5,1;MEANALT=1.65591,2.20455;MQM=59.7107,59.8891;MQMR=60;NS=93;NUMALT=2;ODDS=0.247829;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=203804,61391;QR=72;RO=2;RPL=5783,1714;RPP=12560.6,3724.91;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12560.6,3724.91;SAR=5783,1714;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24,0:0:0:24,0:846,0:-76.1266,-7.22472,0,-76.1266,-7.22472,-76.1266	1/1:58:0,58,0:0:0:58,0:2039,0:-183.761,-17.4597,0,-183.761,-17.4597,-183.761	1/1:105:0,103,0:0:0:103,0:3656,0:-328.889,-31.0061,0,-328.889,-31.0061,-328.889	1/1:178:0,177,0:0:0:177,0:6205,0:-558.195,-53.2823,0,-558.195,-53.2823,-558.195	1/1:10:0,10,0:0:0:10,0:358,0:-32.5629,-3.0103,0,-32.5629,-3.0103,-32.5629	1/1:27:0,27,0:0:0:27,0:962,0:-86.8809,-8.12781,0,-86.8809,-8.12781,-86.8809	1/1:109:0,109,0:0:0:109,0:3860,0:-347.595,-32.8123,0,-347.595,-32.8123,-347.595	1/1:87:0,87,0:0:0:87,0:3063,0:-275.887,-26.1896,0,-275.887,-26.1896,-275.887	1/1:114:0,114,0:0:0:114,0:4024,0:-362.33,-34.3174,0,-362.33,-34.3174,-362.33	1/1:57:0,57,0:0:0:57,0:2009,0:-181.049,-17.1587,0,-181.049,-17.1587,-181.049	1/1:82:0,82,0:0:0:82,0:2912,0:-262.309,-24.6845,0,-262.309,-24.6845,-262.309	1/2:91:0,38,52:0:0:38,52:1331,1872:-261.033,-152.746,-141.307,-108.282,0,-92.6283	1/2:74:0,39,35:0:0:39,35:1370,1260:-214.669,-103.169,-91.4293,-111.855,0,-101.319	1/2:70:0,45,25:0:0:45,25:1551,892:-199.031,-73.0739,-59.5276,-126.309,0,-118.784	1/2:70:0,33,37:0:0:33,37:1182,1324:-204.711,-108.323,-98.3894,-96.7449,0,-85.6068	1/1:71:0,71,0:0:0:71,0:2500,0:-225.239,-21.3731,0,-225.239,-21.3731,-225.239	1/1:30:0,30,0:0:0:30,0:1057,0:-95.4407,-9.0309,0,-95.4407,-9.0309,-95.4407	1/2:36:0,22,14:0:0:22,14:784,504:-105.386,-41.4837,-34.861,-64.2612,0,-60.0468	1/1:36:0,36,0:0:0:36,0:1264,0:-114.045,-10.8371,0,-114.045,-10.8371,-114.045	1/1:194:0,194,0:0:0:194,0:6822,0:-613.971,-58.3998,0,-613.971,-58.3998,-613.971	1/2:136:0,66,69:0:0:66,69:2290,2468:-387.352,-201.24,-181.372,-186.105,0,-165.334	1/2:69:0,17,52:0:0:17,52:591,1849:-199.081,-151.034,-145.916,-48.3972,0,-32.7436	1/1:90:0,90,0:0:0:90,0:3187,0:-287.003,-27.0927,0,-287.003,-27.0927,-287.003	1/2:49:0,19,30:0:0:19,30:674,1080:-143.394,-88.4823,-82.7628,-55.268,0,-46.2371	1/1:104:0,104,0:0:0:104,0:3673,0:-330.547,-31.3071,0,-330.547,-31.3071,-330.547	1/1:184:0,184,0:0:0:184,0:6505,0:-585.255,-55.3895,0,-585.255,-55.3895,-585.255	1/2:230:0,118,111:0:0:118,111:4123,3954:-657.623,-322.381,-286.86,-335.353,0,-301.939	1/1:34:0,34,0:0:0:34,0:1211,0:-109.296,-10.235,0,-109.296,-10.235,-109.296	1/1:168:0,167,0:0:0:167,0:5856,0:-526.578,-50.272,0,-526.578,-50.272,-526.578	1/1:119:0,118,0:0:0:118,0:4161,0:-374.395,-35.5215,0,-374.395,-35.5215,-374.395	1/2:60:0,36,23:0:0:36,23:1278,828:-171.766,-67.6371,-56.8,-104.203,0,-97.2794	.:.:.:.:.:.:.:.	1/1:25:0,25,0:0:0:25,0:885,0:-79.9688,-7.52575,0,-79.9688,-7.52575,-79.9688	1/2:5:0,4,1:0:0:4,1:138,36:-14.4955,-3.29724,-2.09312,-11.5551,0,-11.2541	1/2:9:0,5,4:0:0:5,4:173,144:-26.0899,-12.038,-10.5329,-14.4044,0,-13.2003	1/1:13:0,13,0:0:0:13,0:459,0:-41.6449,-3.91339,0,-41.6449,-3.91339,-41.6449	1/2:176:0,72,104:0:0:72,104:2551,3701:-509.794,-301.985,-280.311,-208.164,0,-176.857	1/2:47:0,17,30:0:0:17,30:602,1076:-137.146,-88.1138,-82.9963,-49.3878,0,-40.3569	1/1:61:0,61,0:0:0:61,0:2173,0:-195.79,-18.3628,0,-195.79,-18.3628,-195.79	1/1:2:0,2,0:0:0:2,0:70,0:-6.6474,-0.60206,0,-6.6474,-0.60206,-6.6474	1/2:127:0,60,67:0:0:60,67:2123,2412:-370.076,-197.167,-179.105,-173.266,0,-153.097	1/1:29:1,28,0:1:36:28,0:989,0:-85.7165,-5.1316,0,-86.0175,-8.42884,-88.9552	1/1:102:0,99,0:0:0:99,0:3457,0:-310.965,-29.802,0,-310.965,-29.802,-310.965	1/1:70:0,69,0:0:0:69,0:2452,0:-220.572,-20.7711,0,-220.572,-20.7711,-220.572	1/2:55:0,28,27:0:0:28,27:964,972:-157.887,-79.6701,-71.2413,-78.5685,0,-70.4406	1/1:120:0,120,0:0:0:120,0:4226,0:-380.465,-36.1236,0,-380.465,-36.1236,-380.465	1/2:81:0,33,48:0:0:33,48:1165,1728:-236.224,-141.356,-131.422,-95.2238,0,-80.7743	1/2:107:0,54,52:0:0:54,52:1887,1872:-306.223,-152.735,-136.479,-153.503,0,-137.849	1/1:78:0,78,0:0:0:78,0:2764,0:-248.991,-23.4803,0,-248.991,-23.4803,-248.991	1/2:108:0,64,44:0:0:64,44:2268,1576:-313.596,-128.885,-109.619,-185.068,0,-171.823	1/1:142:0,140,1:0:0:140,1:4933,36:-443.809,-42.1442,0,-440.872,-39.1663,-440.57	1/1:9:0,9,0:0:0:9,0:317,0:-28.8672,-2.70927,0,-28.8672,-2.70927,-28.8672	1/2:106:0,55,51:0:0:55,51:1931,1828:-306.542,-149.431,-132.874,-157.466,0,-142.113	1/1:111:0,110,1:0:0:110,1:3869,36:-348.05,-33.1133,0,-345.112,-29.8161,-344.811	1/1:10:0,10,0:0:0:10,0:351,0:-31.9274,-3.0103,0,-31.9274,-3.0103,-31.9274	1/1:134:0,134,0:0:0:134,0:4716,0:-424.565,-40.338,0,-424.565,-40.338,-424.565	1/1:28:0,28,0:0:0:28,0:970,0:-87.6105,-8.42884,0,-87.6105,-8.42884,-87.6105	1/1:13:0,13,0:0:0:13,0:451,0:-40.9198,-3.91339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chr01	1357755	.	A	G	165992	PASS	AB=0.494999;ABP=4.07454;AC=149;AF=0.792553;AN=188;AO=7866;CIGAR=1X;DP=10353;DPB=10353;DPRA=0;EPP=17083.8;EPPR=5394.78;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.9653;MQMR=59.9992;NS=94;NUMALT=1;ODDS=0.875848;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=280610;QR=88713;RO=2483;RPL=7866;RPP=17083.8;RPPR=5394.78;RPR=0;RUN=1;SAF=0;SAP=17083.8;SAR=7866;SRF=0;SRP=5394.78;SRR=2483;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:202:0,201:0:0:201:7157:-643.827,-60.507,0	1/1:177:0,177:0:0:177:6322:-569.072,-53.2823,0	1/1:246:1,245:1:36:245:8752:-784.074,-70.4551,0	1/1:84:0,84:0:0:84:2985:-268.883,-25.2865,0	1/1:47:0,47:0:0:47:1676:-151.126,-14.1484,0	1/1:135:0,135:0:0:135:4836:-435.394,-40.6391,0	1/1:154:0,154:0:0:154:5483:-493.597,-46.3586,0	1/1:92:0,92:0:0:92:3277:-295.149,-27.6948,0	1/1:129:0,129:0:0:129:4595:-413.717,-38.8329,0	1/1:129:0,129:0:0:129:4587:-412.993,-38.8329,0	0/1:70:40,30:40:1440:30:1068:-75.36,0,-108.826	0/1:98:51,47:51:1832:47:1675:-121.536,0,-135.66	0/1:135:67,68:67:2400:68:2442:-179.396,0,-175.618	0/1:59:30,29:30:1080:29:1031:-75.3419,0,-79.7525	1/1:78:0,78:0:0:78:2783:-250.711,-23.4803,0	1/1:101:0,101:0:0:101:3589:-323.146,-30.404,0	0/1:80:47,33:47:1680:33:1188:-83.1462,0,-127.405	1/1:68:0,68:0:0:68:2420:-218.057,-20.47,0	1/1:183:0,183:0:0:183:6515:-586.435,-55.0885,0	0/1:198:84,114:84:3005:114:4064:-306.345,0,-211.076	0/1:35:23,12:23:828:12:428:-28.3228,0,-64.3081	1/1:99:0,98:0:0:98:3488:-313.701,-29.5009,0	0/1:111:50,61:50:1784:61:2180:-163.052,0,-127.428	1/1:74:0,74:0:0:74:2644:-238.207,-22.2762,0	1/1:334:0,334:0:0:334:11931:-1073.46,-100.544,0	0/1:274:113,161:113:4049:161:5722:-432.613,0,-282.112	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:319:0,319:0:0:319:11386:-1024.62,-96.0286,0	1/1:107:3,104:3:108:104:3730:-325.825,-22.135,0	0/1:245:139,106:139:4956:106:3762:-265.029,0,-372.437	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:179:79,100:79:2813:100:3574:-267.983,0,-199.524	0/1:145:79,66:79:2828:66:2338:-167.03,0,-211.11	1/1:116:0,116:0:0:116:4152:-373.863,-34.9195,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:155:78,77:78:2769:77:2760:-201.982,0,-202.788	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	1/1:61:0,61:0:0:61:2161:-194.709,-18.3628,0	1/1:92:0,92:0:0:92:3284:-295.78,-27.6948,0	0/1:68:38,30:38:1368:30:1063:-75.5108,0,-102.951	1/1:78:0,78:0:0:78:2769:-249.451,-23.4803,0	0/1:154:79,75:79:2801:75:2688:-195.806,0,-205.971	0/1:216:110,106:110:3940:106:3800:-277.175,0,-289.769	1/1:89:0,89:0:0:89:3168:-285.343,-26.7917,0	0/1:198:99,99:99:3526:99:3538:-259.025,0,-257.943	1/1:74:0,74:0:0:74:2640:-236.715,-22.2762,0	1/1:16:0,16:0:0:16:568:-51.4485,-4.81648,0	0/1:177:87,90:87:3105:90:3184:-233.5,0,-226.394	1/1:58:0,58:0:0:58:2073:-186.839,-17.4597,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:204:0,204:0:0:204:7250:-652.288,-61.4101,0	1/1:51:0,51:0:0:51:1812:-163.361,-15.3525,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:127:0,127:0:0:127:4530:-407.868,-38.2308,0	0/1:133:66,67:66:2347:67:2408:-176.939,0,-171.452	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:211:120,91:120:4283:91:3256:-229.744,0,-322.131	0/1:218:121,97:121:4329:97:3463:-246.258,0,-324.16	1/1:75:5,70:5:180:70:2489:-207.71,-6.02519,0	1/1:143:0,143:0:0:143:5102:-459.252,-43.0473,0	0/1:146:76,70:76:2720:70:2485:-179.952,0,-201.093	1/1:79:0,79:0:0:79:2810:-253.139,-23.7814,0	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	1/1:114:0,114:0:0:114:4064:-365.946,-34.3174,0	0/1:98:49,49:49:1756:49:1745:-127.832,0,-128.823	0/1:34:19,15:19:680:15:532:-37.9781,0,-51.2941	0/1:99:50,49:50:1777:49:1756:-128.522,0,-130.409	0/1:67:19,47:19:665:47:1684:-131.771,0,-40.0927	1/1:315:0,315:0:0:315:11256:-1012.93,-94.8245,0	0/1:204:102,102:102:3668:102:3660:-268.193,0,-268.912	1/1:126:1,125:1:32:125:4446:-397.113,-34.7305,0	1/1:105:0,104:0:0:104:3719:-334.547,-31.3071,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:120:0,120:0:0:120:4287:-386.008,-36.1236,0	0/1:118:60,58:60:2148:58:2068:-150.498,0,-158.066	0/1:258:146,112:146:5210:112:4008:-283.244,0,-391.371	0/1:97:45,52:45:1616:52:1864:-138.84,0,-116.53	0/1:101:53,48:53:1885:48:1716:-124.322,0,-139.523	0/1:82:43,39:43:1540:39:1388:-100.534,0,-114.209	0/1:127:63,64:63:2252:64:2273:-166.601,0,-164.712	0/1:50:20,30:20:708:30:1068:-81.3806,0,-48.9941	1/1:94:0,94:0:0:94:3330:-299.918,-28.2968,0	1/1:72:0,72:0:0:72:2566:-231.189,-21.6742,0	1/1:94:0,94:0:0:94:3355:-302.167,-28.2968,0	0/1:158:68,90:68:2417:90:3228:-243.179,0,-170.222	0/1:84:49,35:49:1756:35:1260:-88.419,0,-133.037	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0	1/1:94:0,94:0:0:94:3359:-302.526,-28.2968,0
chr01	1520017	.	C	T	16018.6	PASS	AB=0.394967;ABP=265.754;AC=39;AF=0.209677;AN=186;AO=1089;CIGAR=1X;DP=6205;DPB=6205;DPRA=1.14305;EPP=2367.74;EPPR=11099.2;GTI=2;LEN=1;MEANALT=1.02564;MQM=59.9568;MQMR=59.9947;NS=93;NUMALT=1;ODDS=5.16494;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38552;QR=182515;RO=5110;RPL=1089;RPP=2367.74;RPPR=11099.2;RPR=0;RUN=1;SAF=0;SAP=2367.74;SAR=1089;SRF=0;SRP=11099.2;SRR=5110;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:60:58,2:58:2053:2:72:0,-11.2251,-178.203	0/0:137:136,0:136:4857:0:0:0,-40.9401,-436.923	0/0:86:85,0:85:3037:0:0:0,-25.5875,-273.238	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:103:103,0:103:3685:0:0:0,-31.0061,-331.851	0/0:88:88,0:88:3130:0:0:0,-26.4906,-281.924	0/0:74:74,0:74:2645:0:0:0,-22.2762,-238.295	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.11	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/1:57:26,31:26:936:31:1108:-82.8723,0,-67.4008	0/1:65:40,25:40:1436:25:900:-61.7541,0,-109.971	0/1:104:78,26:78:2796:26:917:-51.5342,0,-220.145	0/1:51:25,26:25:896:26:928:-68.4857,0,-65.6078	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/0:112:112,0:112:3994:0:0:0,-33.7154,-359.647	0/1:38:22,16:22:792:16:568:-40.0127,0,-60.1665	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:140:139,0:139:4980:0:0:0,-41.8432,-447.988	0/1:74:46,28:46:1618:28:1000:-68.0373,0,-123.629	0/1:84:48,35:48:1724:35:1222:-85.0802,0,-130.247	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/1:77:50,27:50:1788:27:937:-61.4618,0,-138.023	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/0:173:173,0:173:6144:0:0:0,-52.0782,-553.058	0/1:122:79,43:79:2821:43:1479:-96.6715,0,-217.402	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:139:139,0:139:4965:0:0:0,-41.8432,-446.998	0/0:88:87,0:87:3082:0:0:0,-26.1896,-277.316	0/1:54:33,21:33:1176:21:744:-51.0287,0,-89.8921	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:158:88,70:88:3168:70:2489:-176.699,0,-237.78	0/1:106:64,42:64:2281:42:1508:-104.105,0,-173.641	0/0:89:89,0:89:3169:0:0:0,-26.7917,-285.434	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:60:28,32:28:1000:32:1129:-83.8499,0,-72.2536	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.692	0/0:50:50,0:50:1771:0:0:0,-15.0515,-159.672	0/1:56:32,24:32:1152:24:860:-60.8642,0,-87.1325	0/0:91:90,0:90:3224:0:0:0,-27.0927,-290.062	0/1:64:42,22:42:1512:22:784:-51.618,0,-117.109	0/1:79:43,36:43:1525:36:1258:-89.7369,0,-113.76	0/0:70:70,0:70:2482:0:0:0,-21.0721,-223.631	0/1:77:46,31:46:1648:31:1104:-76.4913,0,-125.429	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:52:27,25:27:968:25:900:-65.6675,0,-71.7838	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2452	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.136	0/1:113:64,49:64:2285:49:1752:-123.948,0,-171.894	.:.:.:.:.:.:.:.	0/1:98:49,49:49:1726:49:1737:-127.11,0,-126.12	0/1:94:56,38:56:2008:38:1336:-92.2431,0,-152.697	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:64:40,24:40:1413:24:841:-56.7405,0,-108.199	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:100:100,0:100:3558:0:0:0,-30.103,-320.426	0/1:78:55,23:55:1945:23:824:-51.003,0,-151.844	0/1:14:12,2:12:428:2:72:-2.6223,0,-34.6444	0/1:83:59,24:59:2105:24:837:-50.6602,0,-164.732	0/1:45:25,20:25:896:20:686:-48.5094,0,-67.414	0/0:135:135,0:135:4821:0:0:0,-40.639,-434.044	0/1:73:48,25:48:1724:25:869:-56.5487,0,-133.47	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/1:54:40,14:40:1436:14:500:-29.0723,0,-113.282	0/1:116:64,52:64:2296:52:1810:-128.258,0,-171.982	0/1:60:39,21:39:1404:21:744:-49.2225,0,-108.597	0/1:56:30,26:30:1076:26:928:-66.9806,0,-80.2952	0/1:68:48,20:48:1728:20:712:-43.9366,0,-135.335	0/1:132:76,56:76:2713:56:1993:-139.906,0,-204.676	0/1:23:18,5:18:644:5:180:-9.62837,0,-51.3669	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:94:94,0:94:3325:0:0:0,-28.2968,-299.467	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:142:96,46:96:3425:46:1648:-105.856,0,-265.717	0/1:42:17,25:17:612:25:892:-67.9564,0,-42.7702	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.145	0/0:85:85,0:85:3025:0:0:0,-25.5875,-272.48
chr01	1520023	.	CGT	CGG,AGG	132403	PASS	AB=0.602151,0.397849;ABP=247.453,247.453;AC=147,39;AF=0.790323,0.209677;AN=186;AO=5013,1081;CIGAR=2M1X,1X1M1X;DP=6094;DPB=6095;DPRA=16.5489,1.16254;EPP=10888.6,2350.37;EPPR=0;GTI=2;LEN=1,3;MEANALT=1.42391,1.975;MQM=59.993,59.9593;MQMR=0;NS=93;NUMALT=2;ODDS=5.5711;PAIRED=0,0;PAIREDR=0;PAO=0,3;PQA=0,104;PQR=0;PRO=0;QA=179662,38200;QR=0;RO=0;RPL=5013,1081;RPP=10888.6,2350.37;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10888.6,2350.37;SAR=5013,1081;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32,0:0:0:32,0:1140,0:-102.909,-9.63296,0,-102.909,-9.63296,-102.909	1/1:60:0,58,2:0:0:58,2:2072,69:-186.405,-17.4597,0,-180.8,-11.5093,-180.198	1/1:134:0,134,0:0:0:134,0:4811,0:-433.144,-40.338,0,-433.144,-40.338,-433.144	1/1:87:0,87,0:0:0:87,0:3110,0:-280.127,-26.1896,0,-280.127,-26.1896,-280.127	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:103:0,103,0:0:0:103,0:3700,0:-333.201,-31.0061,0,-333.201,-31.0061,-333.201	1/1:88:0,88,0:0:0:88,0:3148,0:-283.546,-26.4906,0,-283.546,-26.4906,-283.546	1/1:73:0,73,0:0:0:73,0:2628,0:-236.766,-21.9752,0,-236.766,-21.9752,-236.766	1/1:40:0,40,0:0:0:40,0:1428,0:-128.816,-12.0412,0,-128.816,-12.0412,-128.816	1/1:88:0,88,0:0:0:88,0:3168,0:-285.343,-26.4906,0,-285.343,-26.4906,-285.343	1/2:56:0,25,31:0:0:25,31:900,1100:-163.416,-89.9782,-82.4525,-73.7953,0,-64.4633	1/2:63:0,38,25:0:0:38,25:1360,887:-183.528,-72.6226,-61.1834,-111.261,0,-103.736	1/2:99:0,73,26:0:0:73,26:2616,915:-287.769,-74.8373,-52.8621,-213.285,0,-205.458	1/2:45:0,22,23:0:0:22,23:792,811:-131.013,-66.3865,-59.7638,-64.983,0,-58.0593	1/1:66:0,66,0:0:0:66,0:2372,0:-213.738,-19.868,0,-213.738,-19.868,-213.738	1/1:108:0,108,0:0:0:108,0:3872,0:-348.674,-32.5112,0,-348.674,-32.5112,-348.674	1/2:37:0,22,15:0:0:22,15:788,538:-108.504,-44.2403,-37.6177,-64.6221,0,-60.1067	1/1:48:0,48,0:0:0:48,0:1724,0:-155.445,-14.4494,0,-155.445,-14.4494,-155.445	1/1:136:0,136,0:0:0:136,0:4884,0:-439.711,-40.9401,0,-439.711,-40.9401,-439.711	1/2:74:0,46,28:0:0:46,28:1652,980:-214.846,-80.078,-66.2306,-135.121,0,-126.692	1/2:82:0,48,34:0:0:48,34:1728,1209:-239.876,-98.8804,-84.4309,-141.353,0,-131.117	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/2:76:0,50,26:0:0:50,26:1784,899:-218.837,-73.3949,-58.3434,-145.791,0,-137.964	1/1:69:0,69,0:0:0:69,0:2464,0:-222.014,-20.7711,0,-222.014,-20.7711,-222.014	1/1:169:0,169,0:0:0:169,0:6048,0:-544.424,-50.8741,0,-544.424,-50.8741,-544.424	1/2:124:0,81,43:0:0:81,43:2904,1490:-358.306,-121.444,-97.061,-237.212,0,-224.268	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:134:0,134,0:0:0:134,0:4784,0:-430.718,-40.338,0,-430.718,-40.338,-430.718	1/1:80:0,80,0:0:0:80,0:2861,0:-257.727,-24.0824,0,-257.727,-24.0824,-257.727	1/2:53:0,33,20:0:0:33,20:1169,709:-152.983,-57.756,-47.822,-95.2216,0,-89.201	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	2/2:4:0,0,4:0:0:0,4:0,142:-13.1292,-13.1292,-13.1292,-1.20412,-1.20412,0	1/2:9:0,5,4:0:0:5,4:180,130:-25.5235,-10.817,-9.31183,-15.0469,0,-13.8428	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:156:0,87,69:0:0:87,69:3120,2447:-454.194,-199.714,-173.524,-254.837,0,-234.065	1/2:107:0,64,43:0:0:64,43:2296,1532:-312.507,-125.229,-105.963,-187.635,0,-174.691	1/1:83:0,83,0:0:0:83,0:2976,0:-268.072,-24.9855,0,-268.072,-24.9855,-268.072	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:59:0,27,32:0:0:27,32:972,1148:-173.303,-93.9925,-85.8647,-79.6701,0,-70.0371	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/1:94:0,94,0:0:0:94,0:3372,0:-303.695,-28.2968,0,-303.695,-28.2968,-303.695	1/1:49:0,49,0:0:0:49,0:1752,0:-157.964,-14.7505,0,-157.964,-14.7505,-157.964	1/2:56:0,32,24:0:0:32,24:1152,848:-163.416,-69.4148,-59.7818,-94.3572,0,-87.1325	1/1:87:0,85,2:0:0:85,2:3040,64:-273.509,-25.5876,0,-268.354,-20.1115,-267.752	1/2:63:0,41,22:0:0:41,22:1468,789:-184.428,-64.7124,-52.3702,-120.074,0,-113.451	1/2:78:0,42,36:0:0:42,36:1508,1272:-226.961,-103.945,-91.3018,-123.371,0,-112.534	1/1:66:0,66,0:0:0:66,0:2372,0:-213.738,-19.868,0,-213.738,-19.868,-213.738	1/2:77:0,46,31:0:0:46,31:1652,1102:-224.922,-90.1577,-76.3103,-135.121,0,-125.789	1/1:69:0,69,0:0:0:69,0:2464,0:-222.014,-20.7711,0,-222.014,-20.7711,-222.014	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:50:0,26,24:0:0:26,24:936,862:-147.051,-70.6776,-62.8508,-76.7327,0,-69.508	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:76:0,76,0:0:0:76,0:2713,0:-244.412,-22.8783,0,-244.412,-22.8783,-244.412	1/1:46:0,46,0:0:0:46,0:1652,0:-148.968,-13.8474,0,-148.968,-13.8474,-148.968	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515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chr01	1591852	.	T	A	31322.6	PASS	AB=0.509419;ABP=5.87365;AC=40;AF=0.212766;AN=188;AO=1903;CIGAR=1X;DP=8145;DPB=8145;DPRA=1.25856;EPP=4135.32;EPPR=13557.3;GTI=1;LEN=1;MEANALT=1;MQM=59.5355;MQMR=59.9475;NS=94;NUMALT=1;ODDS=0.246252;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67227;QR=223877;RO=6242;RPL=0;RPP=4135.32;RPPR=13557.3;RPR=1903;RUN=1;SAF=1903;SAP=4135.32;SAR=0;SRF=6242;SRP=13557.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:54:31,23:31:1112:23:812:-57.1453,0,-84.1357	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:282:282,0:282:10120:0:0:0,-84.8905,-910.728	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:125:125,0:125:4492:0:0:0,-37.6287,-404.444	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/0:124:123,1:123:4416:1:32:0,-34.1284,-394.383	0/0:127:127,0:127:4531:0:0:0,-38.2308,-407.958	0/0:29:29,0:29:1044:0:0:0,-8.72987,-93.9038	0/1:113:58,55:58:2084:55:1964:-142.653,0,-153.803	0/1:80:42,38:42:1508:38:1356:-98.2581,0,-111.932	0/1:54:27,27:27:968:27:956:-70.1001,0,-71.1817	0/1:54:30,24:30:1076:24:848:-60.3573,0,-80.8972	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:31:15,16:15:540:16:568:-42.119,0,-39.6012	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:232:232,0:232:8315:0:0:0,-69.839,-748.344	0/1:236:120,116:120:4312:116:4067:-295.137,0,-317.201	0/1:22:4,18:4:144:18:640:-51.3033,0,-6.69096	0/0:125:125,0:125:4469:0:0:0,-37.6287,-402.346	0/1:75:53,22:53:1900:22:769:-46.9514,0,-148.701	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:268:268,0:268:9598:0:0:0,-80.676,-863.754	0/1:253:117,136:117:4200:136:4770:-353.193,0,-301.829	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/0:364:364,0:364:13037:0:0:0,-109.575,-1173.14	0/0:148:147,1:147:5264:1:36:0,-40.9542,-470.294	0/1:114:62,52:62:2228:52:1824:-130.121,0,-166.466	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:2,2:2:72:2:72:-5.62401,0,-5.6326	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:190:86,104:86:3092:104:3720:-277.803,0,-221.311	0/1:93:40,53:40:1436:53:1858:-137.538,0,-101.542	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.175	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:179:89,90:89:3191:90:3185:-232.963,0,-233.528	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/1:55:27,28:27:972:28:989:-72.7654,0,-71.2409	0/0:149:149,0:149:5351:0:0:0,-44.8535,-481.72	0/1:40:29,11:29:1031:11:377:-22.2162,0,-81.0601	0/1:146:65,81:65:2332:81:2884:-215.832,0,-166.189	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.692	0/1:108:51,57:51:1832:57:2017:-149.285,0,-132.65	0/0:86:85,1:85:3052:1:21:0,-23.7886,-272.809	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:31:8,23:8:284:23:816:-64.4298,0,-16.5714	0/0:109:109,0:109:3907:0:0:0,-32.8123,-351.822	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:59:58,1:58:2088:1:36:0,-14.1625,-184.592	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:123:123,0:123:4407:0:0:0,-37.0267,-396.801	0/1:87:34,53:34:1220:53:1908:-145.798,0,-83.9172	0/1:4:1,3:1:36:3:93:-7.47261,0,-2.39415	0/1:200:103,97:103:3688:97:3399:-245.915,0,-271.916	0/1:99:61,38:61:2192:38:1348:-91.7112,0,-167.743	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.722	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.72	0/1:136:68,68:68:2448:68:2377:-173.248,0,-179.589	0/0:137:132,5:132:4723:5:180:0,-24.689,-408.571	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.316	0/1:40:17,23:17:612:23:790:-59.3622,0,-43.3722	0/1:12:9,3:9:324:3:108:-6.4518,0,-25.8935	0/1:122:67,55:67:2404:55:1930:-136.656,0,-179.887	0/1:84:43,41:43:1544:41:1460:-106.207,0,-113.962	0/0:175:175,0:175:6264:0:0:0,-52.6802,-563.846	0/1:72:39,33:39:1400:33:1168:-83.7223,0,-104.625	0/1:11:10,1:10:360:1:36:-0.267437,0,-29.433	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.217	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:133:133,0:133:4765:0:0:0,-40.037,-429.004	0/1:137:60,77:60:2139:77:2718:-203.346,0,-151.529	0/1:337:135,202:135:4840:202:7111:-538.545,0,-334.296	0/1:54:25,29:25:896:29:1036:-77.2049,0,-64.7047	0/1:54:23,31:23:828:31:1096:-82.692,0,-58.5885	0/1:49:22,27:22:792:27:960:-71.9603,0,-56.8552	0/1:142:93,49:93:3335:49:1752:-114.935,0,-257.62	0/1:21:8,13:8:284:13:468:-36.138,0,-19.5817	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.596	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.883	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:49:26,23:26:936:23:820:-59.3498,0,-69.809	0/1:74:23,51:23:828:51:1816:-141.441,0,-52.5679	0/0:183:182,1:182:6544:1:36:0,-51.4902,-585.067	0/0:130:130,0:130:4667:0:0:0,-39.1339,-420.189
chr01	1591876	.	C	T	131500	PASS	AB=0.487311;ABP=8.19041;AC=148;AF=0.787234;AN=188;AO=6182;CIGAR=1X;DP=8095;DPB=8095;DPRA=0;EPP=13418.4;EPPR=4144.01;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9581;MQMR=59.5845;NS=94;NUMALT=1;ODDS=0.488524;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221168;QR=68174;RO=1911;RPL=6179;RPP=13401;RPPR=4135.34;RPR=3;RUN=1;SAF=6180;SAP=13409.7;SAR=2;SRF=1910;SRP=4144.01;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:54:23,31:23:824:31:1108:-83.7754,0,-58.2277	1/1:48:0,48:0:0:48:1713:-154.454,-14.4494,0	1/1:279:0,279:0:0:279:10012:-901.013,-83.9874,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:21:0,21:0:0:21:737:-66.6506,-6.32163,0	1/1:126:0,126:0:0:126:4504:-405.334,-37.9298,0	1/1:101:1,100:1:36:100:3583:-319.078,-26.8058,0	1/1:124:1,123:1:36:123:4411:-393.534,-33.7294,0	1/1:126:0,126:0:0:126:4498:-404.989,-37.9298,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:107:52,55:52:1842:55:1943:-142.933,0,-133.757	0/1:81:40,41:40:1421:41:1459:-107.222,0,-103.802	0/1:57:30,27:30:1056:27:968:-70.2787,0,-78.1894	0/1:56:26,30:26:921:30:1076:-80.2952,0,-66.3207	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:29:0,29:0:0:29:1033:-93.281,-8.72987,0	0/1:30:15,15:15:528:15:532:-39.1788,0,-38.8195	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:228:0,228:0:0:228:8163:-734.684,-68.6348,0	0/1:238:119,119:119:4228:119:4255:-311.473,0,-309.043	0/1:21:17,4:17:608:4:144:-6.99199,0,-48.7304	1/1:122:0,122:0:0:122:4350:-391.672,-36.7257,0	0/1:73:22,51:22:770:51:1836:-143.545,0,-47.6441	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:265:0,265:0:0:265:9503:-855.207,-79.773,0	0/1:251:135,116:135:4822:116:4158:-298.843,0,-356.919	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	1/1:362:0,362:0:0:362:12981:-1168.08,-108.973,0	1/1:146:1,145:1:36:145:5172:-462.022,-40.3521,0	0/1:114:52,62:52:1859:62:2207:-164.577,0,-133.253	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.62401	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:186:101,85:101:3615:85:3017:-215.769,0,-269.56	0/1:90:52,38:52:1854:38:1368:-96.3281,0,-138.219	1/1:32:1,31:1:36:31:1095:-95.2575,-6.03469,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:179:90,89:90:3192:89:3183:-232.809,0,-233.594	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	1/1:75:0,75:0:0:75:2683:-241.714,-22.5773,0	0/1:54:28,26:28:1008:26:917:-66.5886,0,-74.7807	1/1:147:0,147:0:0:147:5251:-472.725,-44.2514,0	0/1:38:11,27:11:387:27:972:-76.3481,0,-23.7091	0/1:148:82,66:82:2927:66:2346:-166.846,0,-219.094	1/1:114:0,114:0:0:114:4078:-367.195,-34.3174,0	0/1:107:56,51:56:2000:51:1832:-132.951,0,-148.06	1/1:85:1,84:1:32:84:3020:-268.831,-22.3882,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:31:23,8:23:828:8:288:-16.9355,0,-65.5122	1/1:109:0,109:0:0:109:3897:-350.923,-32.8123,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:72:0,72:0:0:72:2579:-232.359,-21.6742,0	1/1:59:1,58:1:36:58:2084:-184.232,-14.1625,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:122:0,122:0:0:122:4363:-392.843,-36.7257,0	0/1:85:54,31:54:1940:31:1116:-75.1641,0,-149.277	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:204:98,106:98:3508:106:3799:-280.696,0,-254.515	0/1:100:40,60:40:1424:60:2145:-163.214,0,-98.2474	1/1:82:0,82:0:0:82:2926:-263.574,-24.6845,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:141:69,72:69:2472:72:2579:-189.913,0,-180.244	1/1:138:5,133:5:180:133:4776:-413.337,-24.9901,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:48:0,48:0:0:48:1724:-155.437,-14.4494,0	0/1:39:23,16:23:828:16:572:-40.0733,0,-63.0949	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.4518	0/1:120:54,66:54:1923:66:2365:-176.983,0,-137.189	0/1:80:39,40:39:1386:40:1436:-105.506,0,-100.997	1/1:173:2,171:2:72:171:6089:-541.274,-45.2415,0	0/1:73:32,41:32:1144:41:1453:-109.089,0,-81.292	0/1:11:1,10:1:36:10:345:-28.0695,0,-0.267437	1/1:91:0,91:0:0:91:3249:-292.629,-27.3937,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:134:0,134:0:0:134:4791:-431.345,-40.338,0	0/1:135:76,58:76:2706:58:2050:-144.05,0,-202.784	0/1:343:207,136:207:7382:136:4878:-335.916,0,-561.099	0/1:54:30,24:30:1063:24:864:-61.8269,0,-79.6814	0/1:53:30,23:30:1076:23:824:-58.5287,0,-81.1959	0/1:49:27,22:27:968:22:792:-56.8552,0,-72.6814	0/1:141:49,92:49:1756:92:3293:-254.142,0,-115.735	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	1/1:77:0,77:0:0:77:2734:-246.3,-23.1793,0	1/1:64:0,64:0:0:64:2281:-205.55,-19.2659,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:48:23,25:23:828:25:900:-66.8716,0,-60.3724	0/1:72:50,22:50:1788:22:788:-49.5706,0,-139.523	1/1:180:1,179:1:36:179:6411:-573.464,-50.5871,0	1/1:127:0,127:0:0:127:4560:-410.565,-38.2308,0
chr01	1591891	.	A	T	98320.3	PASS	AB=0.500929;ABP=3.07483;AC=41;AF=0.218085;AN=188;AO=4334;CIGAR=1X;DP=18332;DPB=18332;DPRA=1.70333;EPP=9414.17;EPPR=30371.1;GTI=0;LEN=1;MEANALT=1.11111;MQM=54.9481;MQMR=59.7095;NS=94;NUMALT=1;ODDS=5.73866;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154826;QR=495853;RO=13985;RPL=1892;RPP=154.572;RPPR=448.057;RPR=2442;RUN=1;SAF=1892;SAP=154.572;SAR=2442;SRF=6146;SRP=448.057;SRR=7839;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.967	0/1:189:107,82:107:3832:82:2944:-205.595,0,-288.108	0/0:209:209,0:209:7388:0:0:0,-62.9153,-664.888	0/0:581:578,0:578:20436:0:0:0,-173.995,-1838.14	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/0:168:168,0:168:5953:0:0:0,-50.573,-535.845	0/0:289:287,2:287:10127:2:64:0,-80.9481,-905.132	0/0:277:276,1:276:9746:1:36:0,-79.787,-873.379	0/0:296:296,0:296:10503:0:0:0,-89.1049,-945.161	0/0:69:69,0:69:2452:0:0:0,-20.7711,-220.83	0/1:211:106,105:106:3746:105:3748:-272.148,0,-273.816	0/1:162:82,80:82:2919:80:2842:-205.257,0,-214.154	0/1:98:50,48:50:1787:48:1708:-123.802,0,-131.611	0/1:141:65,76:65:2301:76:2695:-200.011,0,-164.899	0/0:127:127,0:127:4534:0:0:0,-38.2308,-408.216	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.46	0/1:52:26,26:26:928:26:932:-68.286,0,-68.1813	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:471:470,1:470:16678:1:36:0,-138.192,-1496.97	0/1:514:254,260:254:9000:260:9304:-680.519,0,-655.069	0/1:56:9,47:9:307:47:1675:-133.981,0,-11.1026	0/0:324:324,0:324:11528:0:0:0,-97.5337,-1036.71	0/1:159:95,64:95:3400:64:2284:-156.749,0,-258.341	0/0:77:77,0:77:2721:0:0:0,-23.1793,-245.121	0/0:651:651,0:651:23135:0:0:0,-195.971,-2080.11	0/1:523:256,267:256:9066:267:9522:-695.656,0,-658.327	0/0:90:90,0:90:3173:0:0:0,-27.0927,-285.796	0/0:735:734,1:734:26112:1:36:0,-217.662,-2345.62	0/0:336:335,1:335:11888:1:36:0,-97.5478,-1065.6	0/1:268:132,135:132:4689:135:4833:-353.488,0,-341.386	0/0:38:37,0:37:1294:0:0:0,-11.1381,-116.389	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/1:10:6,4:6:212:4:144:-10.2311,0,-16.4145	0/1:8:4,4:4:144:4:144:-10.8609,0,-10.9054	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:383:185,198:185:6518:198:7097:-521.93,0,-471.4	0/1:177:91,86:91:3210:86:3062:-220.317,0,-235.774	0/0:77:77,0:77:2725:0:0:0,-23.1793,-245.48	0/1:11:9,2:9:324:2:72:-3.50299,0,-26.1945	0/1:351:171,180:171:6069:180:6452:-471.876,0,-440.625	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.257	0/0:67:67,0:67:2360:0:0:0,-20.169,-212.636	0/0:146:146,0:146:5175:0:0:0,-43.9504,-465.88	0/1:104:50,54:50:1753:54:1932:-142.656,0,-126.741	0/0:258:257,1:257:9122:1:36:0,-74.0712,-817.348	0/1:108:69,39:69:2438:39:1396:-92.603,0,-187.164	0/1:387:195,192:195:6905:192:6817:-493.864,0,-505.022	0/0:239:239,0:239:8446:0:0:0,-71.9462,-760.104	0/1:267:128,138:128:4527:138:4936:-362.666,0,-327.187	0/0:206:205,1:205:7288:1:36:0,-58.4139,-652.337	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:141:60,81:60:2143:81:2908:-218.141,0,-150.674	0/0:199:199,0:199:7073:0:0:0,-59.905,-636.599	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:308:308,0:308:10897:0:0:0,-92.7172,-978.565	0/0:87:86,1:86:3024:1:36:0,-22.5913,-268.014	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.192	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:253:252,0:252:8945:0:0:0,-75.8596,-804.523	0/1:194:92,101:92:3296:101:3624:-267.231,0,-238.396	0/1:8:3,5:3:108:5:180:-14.0917,0,-7.66053	0/1:444:225,219:225:7978:219:7831:-570.52,0,-584.319	0/1:354:192,162:192:6837:162:5805:-414.804,0,-508.791	0/0:129:129,0:129:4572:0:0:0,-38.8329,-411.647	0/0:150:150,0:150:5287:0:0:0,-45.1545,-475.932	0/1:482:241,239:241:8548:239:8544:-620.93,0,-623.63	0/0:375:369,6:369:13079:6:216:0,-93.102,-1156.7	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.476	0/0:108:108,0:108:3815:0:0:0,-32.5112,-343.446	0/1:80:32,48:32:1152:48:1706:-129.534,0,-79.9077	0/1:45:35,10:35:1260:10:360:-19.1416,0,-100.146	0/1:245:124,121:124:4373:121:4319:-311.321,0,-319.957	0/1:214:110,104:110:3908:104:3701:-266.673,0,-287.424	0/0:449:448,1:448:15894:1:36:0,-131.576,-1426.36	0/1:344:180,164:180:6412:164:5859:-422.305,0,-473.56	0/0:28:27,1:27:936:1:36:0,-4.85007,-79.772	0/0:243:242,1:242:8546:1:36:0,-69.6018,-765.498	0/0:20:20,0:20:697:0:0:0,-6.0206,-63.0507	0/0:275:275,0:275:9743:0:0:0,-82.7832,-876.469	0/1:246:130,116:130:4587:116:4142:-296.312,0,-337.644	0/1:750:335,415:335:11898:415:14854:-1108.07,0,-842.17	0/1:114:55,58:55:1945:58:2078:-152.653,0,-140.936	0/1:118:55,63:55:1953:63:2256:-167.581,0,-140.295	0/1:101:51,50:51:1804:50:1788:-130.494,0,-132.232	0/1:276:158,117:158:5623:117:4126:-287.766,0,-423.034	0/1:50:27,23:27:954:23:820:-58.8895,0,-70.8946	0/0:140:139,0:139:4896:0:0:0,-41.8432,-440.546	0/0:139:139,0:139:4913:0:0:0,-41.8432,-442.233	0/0:37:37,0:37:1300:0:0:0,-11.1381,-117.288	0/1:94:56,38:56:1973:38:1360:-94.2077,0,-148.226	0/1:135:41,94:41:1459:94:3350:-260.423,0,-90.9477	0/0:408:407,1:407:14415:1:36:0,-119.222,-1293.25	0/0:235:235,0:235:8298:0:0:0,-70.742,-746.773
chr01	1691761	.	A	C	32731.7	PASS	AB=0.556511;ABP=96.5176;AC=42;AF=0.223404;AN=188;AO=1877;CIGAR=1X;DP=7052;DPB=7052;DPRA=1.11176;EPP=4001.07;EPPR=11123.4;GTI=1;LEN=1;MEANALT=1.04651;MQM=59.8796;MQMR=59.9926;NS=94;NUMALT=1;ODDS=1.48704;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66722;QR=182268;RO=5169;RPL=9;RPP=4001.07;RPPR=11123.4;RPR=1868;RUN=1;SAF=0;SAP=4078.86;SAR=1877;SRF=0;SRP=11227.4;SRR=5169;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:60,0:60:2083:0:0:0,-18.0618,-187.398	0/1:66:22,44:22:792:44:1556:-120.463,0,-51.7377	0/0:98:98,0:98:3479:0:0:0,-29.5009,-313.323	0/0:175:175,0:175:6139:0:0:0,-52.6802,-552.62	0/0:62:62,0:62:2159:0:0:0,-18.6639,-194.575	0/0:34:34,0:34:1198:0:0:0,-10.235,-108.124	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.638	0/0:119:119,0:119:4181:0:0:0,-35.8226,-376.478	0/0:191:191,0:191:6732:0:0:0,-57.4967,-605.964	0/0:83:83,0:83:2934:0:0:0,-24.9855,-264.267	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:99:45,54:45:1567:54:1932:-144.355,0,-111.515	0/1:59:33,26:33:1164:26:904:-63.6398,0,-87.3034	0/1:77:43,34:43:1540:34:1181:-83.3034,0,-115.714	0/1:47:20,27:20:704:27:968:-73.289,0,-49.5361	0/0:47:47,0:47:1656:0:0:0,-14.1484,-149.325	0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.923	0/1:22:15,7:15:522:7:237:-15.0287,0,-40.6846	0/0:24:24,0:24:842:0:0:0,-7.22472,-76.0971	0/0:181:181,0:181:6403:0:0:0,-54.4864,-576.363	0/1:109:55,53:55:1908:53:1886:-137.186,0,-139.164	0/1:195:51,144:51:1794:144:5099:-400.355,0,-103.04	0/0:127:127,0:127:4494:0:0:0,-38.2308,-404.633	0/1:96:42,54:42:1452:54:1924:-144.538,0,-102.073	0/0:19:19,0:19:651:0:0:0,-5.71957,-58.91	0/0:199:198,0:198:7032:0:0:0,-59.6039,-632.587	0/1:131:52,79:52:1848:79:2802:-212.985,0,-127.165	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:202:202,0:202:7122:0:0:0,-60.8081,-641.05	0/0:152:152,0:152:5353:0:0:0,-45.7566,-481.909	0/1:122:53,69:53:1859:69:2455:-184.478,0,-130.863	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:17:17,0:17:594:0:0:0,-5.11751,-53.7856	0/1:15:8,7:8:284:7:243:-17.692,0,-21.3879	0/1:7:3,4:3:99:4:144:-11.2064,0,-7.12937	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:144:72,72:72:2561:72:2557:-187.031,0,-187.391	0/1:94:35,59:35:1239:59:2092:-160.204,0,-83.5168	0/0:43:43,0:43:1520:0:0:0,-12.9443,-137.09	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:85:26,59:26:924:59:2093:-163.046,0,-57.8901	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	0/0:159:159,0:159:5618:0:0:0,-47.8638,-505.747	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:44:22,22:22:775:22:766:-56.0131,0,-56.8259	0/0:151:151,0:151:5338:0:0:0,-45.4555,-480.56	0/1:72:24,48:24:855:48:1702:-131.789,0,-55.596	0/1:123:45,78:45:1616:78:2772:-212.696,0,-108.703	0/0:56:56,0:56:1981:0:0:0,-16.8577,-178.563	0/1:96:45,51:45:1571:51:1811:-134.372,0,-112.781	0/0:64:64,0:64:2251:0:0:0,-19.2659,-202.854	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:104:45,59:45:1592:59:2112:-159.042,0,-112.263	0/0:58:58,0:58:2038:0:0:0,-17.4597,-183.691	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:80:80,0:80:2815:0:0:0,-24.0824,-253.592	0/0:29:29,0:29:1017:0:0:0,-8.72987,-91.8398	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:52:52,0:52:1819:0:0:0,-15.6536,-163.988	0/1:73:35,38:35:1229:38:1360:-100.725,0,-88.9365	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/1:124:51,73:51:1811:73:2592:-196.196,0,-125.873	0/1:198:92,106:92:3224:106:3796:-282.233,0,-230.779	0/1:39:34,5:34:1177:5:180:-4.76612,0,-94.4921	0/0:62:62,0:62:2178:0:0:0,-18.6639,-196.286	0/1:182:86,96:86:3045:96:3448:-255.744,0,-219.493	0/0:90:90,0:90:3198:0:0:0,-27.0927,-288.044	0/0:26:26,0:26:899:0:0:0,-7.82678,-81.2204	0/0:29:29,0:29:1024:0:0:0,-8.72987,-92.4726	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	0/1:38:10,28:10:347:28:1000:-78.8762,0,-20.1245	0/1:97:47,50:47:1633:50:1776:-130.921,0,-118.056	0/1:52:20,30:20:699:30:1076:-81.7416,0,-47.8221	0/0:179:179,0:179:6320:0:0:0,-53.8844,-568.901	0/1:122:62,60:62:2183:60:2151:-157.129,0,-160.011	0/0:96:96,0:96:3374:0:0:0,-28.8989,-303.88	0/0:41:40,1:40:1412:1:36:0,-8.74395,-123.779	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:89:39,50:39:1396:50:1788:-134.411,0,-99.1474	0/1:117:52,65:52:1832:65:2315:-173.382,0,-129.94	0/1:41:24,17:24:851:17:603:-42.2573,0,-64.5672	0/1:47:17,30:17:604:30:1076:-83.0044,0,-40.5422	0/1:43:20,23:20:690:23:797:-59.1016,0,-49.475	0/1:104:55,49:55:1934:49:1734:-125.037,0,-143.026	0/1:17:9,8:9:320:8:279:-20.33,0,-24.0248	0/0:58:58,0:58:2039:0:0:0,-17.4597,-183.779	0/0:68:68,0:68:2369:0:0:0,-20.47,-213.466	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/1:87:43,44:43:1510:44:1565:-114.952,0,-110.002	0/1:57:19,38:19:680:38:1338:-103.529,0,-44.3705	0/0:73:73,0:73:2557:0:0:0,-21.9752,-230.379	0/0:84:84,0:84:2971:0:0:0,-25.2865,-267.625
chr01	1691766	.	A	G	33823.4	PASS	AB=0.556562;ABP=98.0759;AC=42;AF=0.223404;AN=188;AO=1908;CIGAR=1X;DP=7164;DPB=7164;DPRA=1.17806;EPP=3965.78;EPPR=10964.6;GTI=1;LEN=1;MEANALT=1.1087;MQM=59.8931;MQMR=59.9916;NS=94;NUMALT=1;ODDS=0.710742;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67937;QR=188039;RO=5250;RPL=1887;RPP=3965.78;RPPR=10964.6;RPR=21;RUN=1;SAF=0;SAP=4146.18;SAR=1908;SRF=0;SRP=11403.2;SRR=5250;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.893	0/1:67:24,43:24:864:43:1519:-116.833,0,-57.9136	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:179:179,0:179:6392:0:0:0,-53.8844,-575.368	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/0:121:120,0:120:4299:0:0:0,-36.1236,-386.726	0/0:197:197,0:197:7068:0:0:0,-59.3029,-636.169	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/1:99:44,55:44:1584:55:1968:-147.593,0,-113.05	0/1:59:32,27:32:1152:27:951:-67.6522,0,-86.2294	0/1:78:43,35:43:1530:35:1236:-87.1226,0,-114.511	0/1:50:21,29:21:756:29:1040:-78.8629,0,-53.3157	0/0:47:47,0:47:1668:0:0:0,-14.1484,-150.405	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:23:16,7:16:576:7:237:-14.7276,0,-45.2513	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/0:180:180,0:180:6476:0:0:0,-54.1854,-582.921	0/1:115:59,55:59:2112:55:1929:-139.208,0,-155.672	0/1:195:51,144:51:1818:144:5143:-404.311,0,-105.199	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.846	0/1:100:43,57:43:1514:57:2031:-152.959,0,-106.446	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:202:202,0:202:7259:0:0:0,-60.8081,-653.358	0/1:133:52,81:52:1872:81:2873:-218.77,0,-128.722	0/0:23:23,0:23:791:0:0:0,-6.92369,-71.5032	0/0:209:207,1:207:7411:1:32:0,-59.7548,-663.816	0/0:153:153,0:153:5499:0:0:0,-46.0576,-495.033	0/1:123:52,71:52:1864:71:2524:-190.385,0,-131.013	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:14:7,7:7:237:7:252:-18.8145,0,-17.4446	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:148:75,73:75:2687:73:2612:-190.776,0,-197.522	0/1:94:35,59:35:1260:59:2067:-157.991,0,-85.4087	0/0:43:42,1:42:1503:1:36:0,-9.34601,-131.966	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:86:26,59:26:927:59:2103:-163.689,0,-57.8963	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:172:172,0:172:6175:0:0:0,-51.7772,-555.845	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:46:23,23:23:824:23:816:-59.9143,0,-60.6359	0/0:156:156,0:156:5575:0:0:0,-46.9607,-501.874	0/1:75:26,49:26:936:49:1724:-132.862,0,-61.9822	0/1:124:47,77:47:1692:77:2760:-211.314,0,-115.239	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:97:45,52:45:1607:52:1853:-137.848,0,-115.719	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:105:45,59:45:1616:59:2120:-159.402,0,-114.063	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.07	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.55	0/1:73:35,38:35:1256:38:1360:-100.725,0,-91.3701	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:130:55,74:55:1980:74:2619:-196.908,0,-139.429	0/1:197:91,106:91:3256:106:3786:-281.634,0,-233.956	0/1:39:34,5:34:1220:5:176:-4.39907,0,-98.3666	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:181:85,96:85:3052:96:3418:-253.348,0,-220.422	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	0/1:39:10,29:10:356:29:1035:-81.7229,0,-20.6411	0/1:99:48,51:48:1724:51:1819:-134.184,0,-125.643	0/1:53:21,32:21:756:32:1152:-88.0356,0,-52.4126	0/0:183:183,0:183:6559:0:0:0,-55.0885,-590.39	0/1:121:64,57:64:2300:57:2031:-146.636,0,-170.836	0/0:95:95,0:95:3383:0:0:0,-28.5978,-304.686	0/0:41:40,1:40:1427:1:36:0,-8.74395,-125.128	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:89:41,48:41:1455:48:1728:-129.014,0,-104.454	0/1:119:51,68:51:1828:68:2448:-184.744,0,-128.978	0/1:41:24,17:24:860:17:597:-41.7139,0,-65.3796	0/1:50:18,32:18:639:32:1148:-88.5783,0,-42.7867	0/1:42:20,22:20:720:22:779:-57.7888,0,-52.4855	0/1:105:55,50:55:1971:50:1779:-128.785,0,-146.056	0/1:17:9,8:9:315:8:288:-21.1499,0,-23.5697	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:93:42,51:42:1504:51:1796:-133.923,0,-107.659	0/1:58:20,38:20:720:38:1360:-105.227,0,-47.669	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:85:84,1:84:3020:1:36:0,-21.9893,-268.432
chr01	1715166	.	G	A	127316	PASS	AB=0.517811;ABP=11.519;AC=145;AF=0.771277;AN=188;AO=4711;CIGAR=1X;DP=6218;DPB=6218;DPRA=16.875;EPP=22.761;EPPR=16.2987;GTI=0;LEN=1;MEANALT=1.01087;MQM=59.7546;MQMR=59.8778;NS=94;NUMALT=1;ODDS=2.84504;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168470;QR=53520;RO=1506;RPL=4708;RPP=10206.8;RPPR=3247.24;RPR=3;RUN=1;SAF=2249;SAP=23.9225;SAR=2462;SRF=702;SRP=18.0116;SRR=804;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:63:21,42:21:752:42:1508:-117.043,0,-49.0414	1/1:76:0,76:0:0:76:2727:-245.669,-22.8783,0	1/1:99:0,99:0:0:99:3552:-319.882,-29.802,0	1/1:40:0,40:0:0:40:1393:-125.653,-12.0412,0	1/1:23:0,23:0:0:23:820:-74.0047,-6.92369,0	1/1:59:0,59:0:0:59:2120:-191.056,-17.7608,0	1/1:76:0,76:0:0:76:2718:-244.859,-22.8783,0	1/1:61:0,61:0:0:61:2172:-195.735,-18.3628,0	1/1:58:1,57:1:36:57:2033:-179.515,-13.8615,0	1/1:126:0,126:0:0:126:4490:-404.255,-37.9298,0	0/1:102:52,50:52:1825:50:1778:-129.586,0,-133.815	0/1:105:56,49:56:1975:49:1741:-125.364,0,-146.416	0/1:139:64,75:64:2248:75:2683:-199.853,0,-160.73	0/1:100:51,49:51:1808:49:1764:-128.936,0,-132.896	1/1:110:0,110:0:0:110:3939:-354.655,-33.1133,0	1/1:116:0,116:0:0:116:4152:-373.747,-34.9195,0	0/1:73:33,40:33:1188:40:1436:-107.559,0,-85.2467	1/1:88:0,88:0:0:88:3159:-284.528,-26.4906,0	1/1:94:0,94:0:0:94:3347:-301.441,-28.2968,0	0/1:69:26,43:26:932:43:1525:-116.765,0,-63.4262	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4157	1/1:38:0,38:0:0:38:1360:-122.695,-11.4391,0	0/1:37:16,21:16:576:21:752:-56.8681,0,-41.0335	1/1:35:0,35:0:0:35:1248:-112.622,-10.5361,0	1/1:145:0,145:0:0:145:5176:-465.838,-43.6494,0	0/1:85:37,48:37:1315:48:1709:-128.498,0,-93.0543	1/1:31:0,31:0:0:31:1116:-100.747,-9.33193,0	1/1:86:1,85:1:36:85:3048:-270.948,-22.2903,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:64:30,34:30:1058:34:1198:-88.8501,0,-76.2471	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:247:117,130:117:4179:130:4655:-344.518,0,-301.881	0/1:24:10,14:10:351:14:504:-38.4687,0,-24.702	1/1:116:0,116:0:0:116:4151:-373.767,-34.9195,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:58:23,35:23:820:35:1248:-95.1559,0,-56.6628	1/1:66:0,66:0:0:66:2359:-212.435,-19.868,0	1/1:70:0,70:0:0:70:2499:-225.158,-21.0721,0	1/1:139:1,138:1:36:138:4948:-441.864,-38.2449,0	0/1:77:40,37:40:1414:37:1320:-95.9056,0,-104.377	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	0/1:32:17,15:17:599:15:540:-39.3036,0,-44.6051	0/1:65:34,31:34:1211:31:1112:-80.8244,0,-89.711	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:62:24,38:24:837:38:1368:-104.757,0,-56.9818	1/1:76:0,76:0:0:76:2720:-245.032,-22.8783,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:64:33,31:33:1184:31:1108:-80.7608,0,-87.6024	1/1:19:0,19:0:0:19:684:-61.888,-5.71957,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:43:1,42:1:36:42:1508:-132.416,-9.34602,0	1/1:32:0,32:0:0:32:1148:-103.623,-9.63296,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:5:0,5:0:0:5:171:-15.7261,-1.50515,0	1/1:35:0,35:0:0:35:1260:-113.699,-10.5361,0	0/1:136:61,75:61:2160:75:2672:-199.783,0,-153.723	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:39:22,17:22:775:17:612:-43.6733,0,-58.3301	0/1:70:31,39:31:1116:39:1398:-105.042,0,-79.6796	1/1:21:1,20:1:36:20:716:-61.1648,-2.72336,0	1/1:32:1,31:1:36:31:1112:-96.7931,-6.03469,0	0/1:106:48,58:48:1703:58:2072:-154.842,0,-121.641	1/1:34:0,34:0:0:34:1215:-109.656,-10.235,0	1/1:77:0,77:0:0:77:2759:-248.537,-23.1793,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:115:50,65:50:1775:65:2336:-175.853,0,-125.412	0/1:20:13,7:13:468:7:237:-15.6385,0,-36.439	0/1:24:11,13:11:396:13:460:-34.5107,0,-28.7547	0/1:46:23,23:23:797:23:824:-60.4421,0,-58.1983	1/1:106:1,105:1:32:105:3736:-332.628,-28.7099,0	0/1:110:55,55:55:1964:55:1976:-144.999,0,-143.917	1/1:47:1,46:1:36:46:1635:-143.84,-10.5501,0	1/1:86:1,85:1:36:85:3052:-271.304,-22.2903,0	1/1:7:0,7:0:0:7:233:-21.2943,-2.10721,0	1/1:74:0,74:0:0:74:2623:-236.311,-22.2762,0	0/1:38:16,22:16:576:22:792:-60.1665,0,-40.7325	0/1:110:56,54:56:1979:54:1915:-139.506,0,-145.269	0/1:139:75,64:75:2692:64:2270:-162.718,0,-200.681	0/1:74:34,40:34:1216:40:1440:-107.608,0,-87.461	0/1:113:62,51:62:2186:51:1823:-130.332,0,-162.989	0/1:149:74,75:74:2635:75:2700:-198.385,0,-192.537	0/1:63:31,32:31:1101:32:1148:-84.6582,0,-80.4301	1/1:77:0,77:0:0:77:2764:-248.986,-23.1793,0	1/1:90:0,90:0:0:90:3228:-290.735,-27.0927,0	1/1:90:0,90:0:0:90:3223:-290.126,-27.0927,0	0/1:138:59,79:59:2107:79:2836:-213.913,0,-148.353	0/1:110:70,39:70:2498:39:1404:-93.4841,0,-191.901	1/1:45:0,45:0:0:45:1616:-145.729,-13.5464,0	1/1:161:1,160:1:32:160:5705:-509.965,-45.2665,0
chr01	1865286	.	TTG	TTT,CTT	170257	PASS	AB=0.496061,0.500739;ABP=3.55771,3.02954;AC=146,42;AF=0.776596,0.223404;AN=188;AO=6151,2046;CIGAR=2M1X,1X1M1X;DP=8218;DPB=8218;DPRA=0,1.29874;EPP=13316.3,4402.52;EPPR=0;GTI=2;LEN=1,3;MEANALT=1.7234,2.29787;MQM=47.4835,37.4609;MQMR=0;NS=94;NUMALT=2;ODDS=0.155467;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=220520,71807;QR=0;RO=0;RPL=0,0;RPP=13359.7,4445.84;RPPR=0;RPR=6151,2046;RUN=1,1;SAF=6146,2041;SAP=13316.3,4402.52;SAR=5,5;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6,0:0:0:6,0:216,0:-19.6613,-1.80618,0,-19.6613,-1.80618,-19.6613	1/2:77:0,39,38:0:0:39,38:1395,1311:-207.909,-94.8366,-83.0964,-113.404,0,-101.965	1/1:126:0,124,1:0:0:124,1:4438,36:-395.42,-37.3277,0,-392.8,-34.6493,-392.499	1/1:194:0,188,6:0:0:188,6:6719,216:-598.66,-56.5936,0,-582.192,-39.7863,-580.385	1/1:14:0,14,0:0:0:14,0:504,0:-45.3991,-4.21442,0,-45.3991,-4.21442,-45.3991	1/1:59:0,59,0:0:0:59,0:2124,0:-190.421,-17.7608,0,-190.421,-17.7608,-190.421	1/1:142:0,142,0:0:0:142,0:5095,0:-454.536,-42.7463,0,-454.536,-42.7463,-454.536	1/1:170:0,170,0:0:0:170,0:6084,0:-542.584,-51.1751,0,-542.584,-51.1751,-542.584	1/1:120:0,120,0:0:0:120,0:4295,0:-384.4,-36.1236,0,-384.4,-36.1236,-384.4	1/1:114:0,114,0:0:0:114,0:4083,0:-363.792,-34.3174,0,-363.792,-34.3174,-363.792	1/1:47:0,47,0:0:0:47,0:1688,0:-150.91,-14.1484,0,-150.91,-14.1484,-150.91	1/2:77:0,34,43:0:0:34,43:1220,1495:-208.045,-109.412,-99.1773,-98.9709,0,-86.0266	1/2:105:0,54,51:0:0:54,51:1944,1792:-285.551,-128.476,-112.221,-157.409,0,-142.056	1/2:56:0,28,28:0:0:28,28:1008,988:-154.313,-72.6486,-64.2198,-82.0031,0,-73.5743	1/2:67:0,43,24:0:0:43,24:1539,852:-189.413,-65.3113,-52.367,-124.443,0,-117.218	1/1:62:0,61,1:0:0:61,1:2196,36:-195.962,-18.3628,0,-193.342,-15.4177,-193.041	1/1:49:0,48,0:0:0:48,0:1728,0:-154.119,-14.4494,0,-154.119,-14.4494,-154.119	1/2:74:0,35,39:0:0:35,39:1260,1375:-200.312,-98.1495,-87.6134,-102.499,0,-90.7588	1/1:49:0,49,0:0:0:49,0:1756,0:-157.168,-14.7505,0,-157.168,-14.7505,-157.168	1/1:103:0,103,0:0:0:103,0:3691,0:-328.982,-31.0061,0,-328.982,-31.0061,-328.982	1/2:203:0,129,73:0:0:129,73:4628,2495:-557.218,-182.984,-144.151,-374.297,0,-352.322	1/2:78:0,28,49:0:0:28,49:1004,1747:-217.284,-136.328,-127.9,-81.0619,0,-66.3114	1/1:67:0,67,0:0:0:67,0:2400,0:-214.476,-20.169,0,-214.476,-20.169,-214.476	1/2:21:0,7,14:0:0:7,14:252,494:-57.2993,-36.861,-34.7538,-20.7846,0,-16.5701	1/1:76:0,76,0:0:0:76,0:2720,0:-242.604,-22.8783,0,-242.604,-22.8783,-242.604	1/1:264:0,264,0:0:0:264,0:9447,0:-840.515,-79.4719,0,-840.515,-79.4719,-840.515	1/2:193:0,124,69:0:0:124,69:4460,2429:-542.85,-182.551,-145.223,-360.636,0,-339.865	1/1:37:0,35,0:0:0:35,0:1256,0:-111.793,-10.5361,0,-111.793,-10.5361,-111.793	1/1:201:0,201,0:0:0:201,0:7194,0:-640.123,-60.507,0,-640.123,-60.507,-640.123	1/1:108:0,107,0:0:0:107,0:3831,0:-340.198,-32.2102,0,-340.198,-32.2102,-340.198	1/2:115:0,74,40:0:0:74,40:2664,1385:-321.442,-106.808,-84.5317,-214.654,0,-202.613	1/1:15:0,15,0:0:0:15,0:540,0:-47.7073,-4.51545,0,-47.7073,-4.51545,-47.7073	1/1:52:0,52,0:0:0:52,0:1864,0:-166.334,-15.6536,0,-166.334,-15.6536,-166.334	1/2:14:0,10,4:0:0:10,4:360,125:-37.9528,-8.68957,-5.67927,-29.5565,0,-28.3524	1/2:14:0,8,6:0:0:8,6:273,216:-37.8926,-16.0477,-13.6395,-22.1747,0,-20.3686	1/1:11:0,11,0:0:0:11,0:396,0:-35.7768,-3.31133,0,-35.7768,-3.31133,-35.7768	1/2:183:0,92,91:0:0:92,91:3312,3221:-519.636,-252.274,-224.579,-267.711,0,-240.317	1/2:112:0,46,64:0:0:46,64:1652,2258:-301.695,-167.946,-154.099,-133.864,0,-114.598	1/1:72:0,72,0:0:0:72,0:2584,0:-230.668,-21.6742,0,-230.668,-21.6742,-230.668	1/2:5:0,2,3:0:0:2,3:72,108:-14.3053,-8.46612,-7.86406,-6.18746,0,-5.28437	1/2:134:0,69,65:0:0:69,65:2484,2261:-370.88,-169.923,-149.152,-201.296,0,-181.729	1/1:34:0,34,0:0:0:34,0:1224,0:-109.155,-10.235,0,-109.155,-10.235,-109.155	1/1:75:0,75,0:0:0:75,0:2689,0:-240.017,-22.5773,0,-240.017,-22.5773,-240.017	1/1:63:0,60,3:0:0:60,3:2147,98:-190.892,-18.0618,0,-183.707,-10.5747,-182.804	1/2:60:0,31,29:0:0:31,29:1116,1014:-166.5,-77.8013,-68.4694,-89.039,0,-80.3091	1/1:165:0,165,0:0:0:165,0:5923,0:-527.188,-49.67,0,-527.188,-49.67,-527.188	1/2:105:0,63,41:0:0:63,41:2263,1425:-285.502,-104.074,-85.1093,-181.554,0,-169.212	1/2:156:0,75,81:0:0:75,81:2673,2836:-430.386,-214.475,-191.898,-216.252,0,-191.869	1/1:164:0,164,0:0:0:164,0:5879,0:-523.993,-49.3689,0,-523.993,-49.3689,-523.993	1/2:146:0,79,67:0:0:79,67:2836,2333:-408.956,-180.079,-156.297,-229.22,0,-209.051	1/1:136:0,135,1:0:0:135,1:4831,34:-430.065,-40.6391,0,-427.577,-37.841,-427.276	1/1:8:0,8,0:0:0:8,0:284,0:-25.716,-2.40824,0,-25.716,-2.40824,-25.716	1/2:85:0,36,49:0:0:36,49:1296,1726:-228.813,-123.953,-113.116,-105.199,0,-90.4488	1/1:62:0,62,0:0:0:62,0:2202,0:-195.795,-18.6639,0,-195.795,-18.6639,-195.795	1/1:24:0,24,0:0:0:24,0:860,0:-77.3251,-7.22472,0,-77.3251,-7.22472,-77.3251	1/1:84:0,84,0:0:0:84,0:3020,0:-269.649,-25.2865,0,-269.649,-25.2865,-269.649	1/1:69:0,69,0:0:0:69,0:2484,0:-221.168,-20.7711,0,-221.168,-20.7711,-221.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chr01	1865294	.	A	G	30565.7	PASS	AB=0.494342;ABP=4.11597;AC=42;AF=0.223404;AN=188;AO=1977;CIGAR=1X;DP=8118;DPB=8118;DPRA=1.34883;EPP=3880.95;EPPR=12292.9;GTI=0;LEN=1;MEANALT=1.04167;MQM=37.5094;MQMR=47.4633;NS=94;NUMALT=1;ODDS=2.6943;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70587;QR=219985;RO=6138;RPL=1923;RPP=3839.78;RPPR=12251.2;RPR=54;RUN=1;SAF=1972;SAP=4252.69;SAR=5;SRF=6133;SRP=13288.1;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.3062	0/1:77:39,38:39:1404:38:1364:-86.3379,0,-102.761	0/0:127:126,1:126:4524:1:36:0,-34.9846,-398.646	0/0:191:186,5:186:6652:5:180:0,-41.7482,-576.815	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.6152	0/0:59:59,0:59:2116:0:0:0,-17.7608,-189.606	0/0:139:139,0:139:4973:0:0:0,-41.8432,-443.681	0/0:167:167,0:167:5954:0:0:0,-50.272,-530.914	0/0:116:116,0:116:4152:0:0:0,-34.9195,-371.589	0/0:112:112,0:112:4012:0:0:0,-33.7154,-357.538	0/0:47:47,0:47:1692:0:0:0,-14.1484,-151.257	0/1:74:35,39:35:1260:39:1384:-90.1227,0,-90.5004	0/1:105:55,50:55:1976:50:1784:-110.618,0,-144.928	0/1:53:27,26:27:972:26:932:-60.5817,0,-71.2613	0/1:67:43,24:43:1540:24:864:-53.3236,0,-117.341	0/0:62:62,0:62:2232:0:0:0,-18.6639,-199.208	0/0:50:50,0:50:1800:0:0:0,-15.0515,-160.509	0/1:72:34,38:34:1224:38:1360:-86.6481,0,-88.14	0/0:49:49,0:49:1752:0:0:0,-14.7505,-156.967	0/0:103:103,0:103:3696:0:0:0,-31.0061,-329.412	0/1:195:127,68:127:4545:68:2395:-137.018,0,-347.235	0/1:77:28,49:28:1000:49:1760:-129.727,0,-66.2109	0/0:66:66,0:66:2360:0:0:0,-19.868,-210.937	0/1:21:7,14:7:252:14:504:-35.3768,0,-16.5701	0/0:75:75,0:75:2684:0:0:0,-22.5772,-239.388	0/0:262:262,0:262:9412:0:0:0,-78.8699,-836.651	0/1:189:122,67:122:4369:67:2400:-143.501,0,-332.956	0/0:36:36,0:36:1288:0:0:0,-10.8371,-114.761	0/0:202:201,0:201:7181:0:0:0,-60.507,-639.223	0/0:107:107,0:107:3836:0:0:0,-32.2102,-341.229	0/1:113:74,39:74:2652:39:1396:-85.0187,0,-201.859	0/0:15:15,0:15:540:0:0:0,-4.51545,-47.7073	0/0:53:53,0:53:1900:0:0:0,-15.9546,-169.544	0/1:13:10,3:10:360:3:108:-4.27305,0,-28.6534	0/1:14:8,6:8:284:6:212:-13.4355,0,-20.6969	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.7768	0/1:180:93,87:93:3340:87:3106:-215.327,0,-243.745	0/1:111:47,64:47:1692:64:2287:-155.335,0,-116.919	0/0:72:70,2:70:2516:2:72:0,-15.5065,-219.015	0/1:5:2,3:2:72:3:108:-7.86406,0,-5.28437	0/1:130:68,62:68:2425:62:2207:-144.572,0,-177.686	0/0:34:33,1:33:1188:1:36:0,-6.98886,-102.988	0/0:76:76,0:76:2732:0:0:0,-22.8783,-243.299	0/0:64:64,0:64:2292:0:0:0,-19.2659,-203.113	0/1:58:32,26:32:1148:26:924:-61.3676,0,-83.4356	0/0:165:165,0:165:5924:0:0:0,-49.6699,-527.288	0/1:103:63,39:63:2260:39:1396:-81.7206,0,-169.204	0/1:151:77,74:77:2772:74:2656:-176.851,0,-201.858	0/0:163:163,0:163:5848:0:0:0,-49.0679,-521.089	0/1:141:78,63:78:2788:63:2257:-150.278,0,-206.318	0/0:137:137,0:137:4908:0:0:0,-41.2411,-436.883	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.0631	0/1:86:37,49:37:1317:49:1757:-115.067,0,-91.7329	0/0:62:62,0:62:2205:0:0:0,-18.6639,-195.903	0/0:23:23,0:23:820:0:0:0,-6.92369,-73.7539	0/0:85:85,0:85:3044:0:0:0,-25.5875,-271.824	0/0:69:69,0:69:2480:0:0:0,-20.7711,-220.849	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.8276	0/0:30:30,0:30:1080:0:0:0,-9.0309,-95.4476	0/0:38:38,0:38:1360:0:0:0,-11.4391,-119.595	0/1:94:35,59:35:1260:59:2099:-150.879,0,-83.4254	0/1:7:1,6:1:36:6:212:-16.2496,0,-1.4596	0/1:167:75,92:75:2696:92:3265:-232.653,0,-189.396	0/1:155:74,81:74:2660:81:2908:-199.979,0,-188.664	0/1:36:31,5:31:1104:5:165:-3.43704,0,-87.8969	0/0:47:47,0:47:1665:0:0:0,-14.1484,-148.633	0/1:124:54,70:54:1936:70:2508:-176.611,0,-134.063	0/0:62:62,0:62:2216:0:0:0,-18.6639,-198.03	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.0718	0/0:68:68,0:68:2436:0:0:0,-20.47,-216.799	0/1:80:37,43:37:1332:43:1536:-109.736,0,-94.4037	0/1:23:8,15:8:288:15:536:-37.7929,0,-19.114	0/1:140:63,77:63:2260:77:2748:-179.973,0,-159.195	0/1:110:63,47:63:2233:47:1692:-104.031,0,-166.177	0/0:245:243,1:243:8728:1:36:0,-70.5298,-774.08	0/1:156:60,96:60:2156:96:3432:-243.888,0,-145.419	0/0:50:50,0:50:1796:0:0:0,-15.0515,-159.57	0/0:68:68,0:68:2436:0:0:0,-20.47,-217.865	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.7757	0/0:101:101,0:101:3601:0:0:0,-30.404,-321.495	0/1:62:20,42:20:720:42:1489:-101.906,0,-45.8108	0/1:200:107,93:107:3817:93:3339:-223.817,0,-277.726	0/1:101:51,50:51:1836:50:1772:-120.953,0,-133.361	0/1:67:39,28:39:1404:28:983:-63.2398,0,-105.389	0/1:71:28,43:28:999:43:1540:-108.8,0,-68.1611	0/1:137:76,61:76:2724:61:2184:-143.992,0,-201.38	0/1:48:17,31:17:612:31:1103:-72.9198,0,-40.3514	0/0:56:56,0:56:1997:0:0:0,-16.8577,-178.134	0/0:62:62,0:62:2228:0:0:0,-18.6639,-198.789	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.5532	0/1:106:45,61:45:1612:61:2179:-149.603,0,-110.065	0/1:58:20,38:20:716:38:1344:-97.1709,0,-46.4122	0/0:118:118,0:118:4236:0:0:0,-35.5215,-376.981	0/0:100:99,1:99:3556:1:32:0,-27.1153,-313.837
chr01	1865299	.	AGCGA	AGCGG	125305	PASS	AB=0.491836;ABP=5.35046;AC=146;AF=0.776596;AN=188;AO=6047;CIGAR=4M1X;DP=8140;DPB=8139.6;DPRA=0;EPP=13125.2;EPPR=4380.74;GTI=1;LEN=1;MEANALT=1.59574;MQM=47.556;MQMR=37.6105;NS=94;NUMALT=1;ODDS=0.751161;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215839;QR=69770;RO=2028;RPL=6041;RPP=13081.8;RPPR=4337.54;RPR=6;RUN=1;SAF=6042;SAP=13090.5;SAR=5;SRF=2023;SRP=4363.43;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:216:-19.6613,-1.80618,0	0/1:77:38,39:38:1321:39:1387:-101.272,0,-84.0822	1/1:125:1,122:1:35:122:4354:-385.296,-34.1491,0	1/1:189:5,184:5:168:184:6549:-568.386,-42.0032,0	1/1:15:0,15:0:0:15:540:-48.6152,-4.51545,0	1/1:59:0,59:0:0:59:2099:-188.123,-17.7608,0	1/1:138:0,138:0:0:138:4936:-440.405,-41.5421,0	1/1:170:0,168:0:0:168:6024:-537.438,-50.573,0	1/1:116:0,116:0:0:116:4129:-369.275,-34.9195,0	1/1:113:0,111:0:0:111:3971:-353.918,-33.4143,0	1/1:47:0,47:0:0:47:1671:-149.436,-14.1484,0	0/1:77:42,35:42:1441:35:1223:-86.3264,0,-95.8475	0/1:106:50,56:50:1740:56:1980:-145.026,0,-109.237	0/1:53:27,25:27:921:25:883:-63.415,0,-61.4625	0/1:67:24,42:24:819:42:1491:-113.238,0,-50.2071	1/1:61:0,61:0:0:61:2187:-195.201,-18.3628,0	1/1:49:0,49:0:0:49:1760:-156.949,-14.7505,0	0/1:74:38,35:38:1319:35:1233:-88.4772,0,-84.5714	1/1:48:0,47:0:0:47:1684:-150.721,-14.1484,0	1/1:99:0,99:0:0:99:3533:-314.916,-29.802,0	0/1:205:70,130:70:2340:130:4615:-352.161,0,-136.143	0/1:77:49,28:49:1698:28:1008:-66.7352,0,-124.741	1/1:67:0,67:0:0:67:2390:-213.607,-20.169,0	0/1:21:14,7:14:487:7:252:-16.5701,0,-34.2564	1/1:75:0,75:0:0:75:2676:-238.695,-22.5773,0	1/1:261:0,260:0:0:260:9309:-827.877,-78.2678,0	0/1:190:68,122:68:2348:122:4376:-333.293,0,-141.49	1/1:35:0,34:0:0:34:1203:-107.298,-10.235,0	1/1:198:0,197:0:0:197:7067:-628.975,-59.3029,0	1/1:105:0,104:0:0:104:3720:-330.821,-31.3071,0	0/1:112:39,72:39:1336:72:2580:-196.23,0,-81.7737	1/1:15:0,12:0:0:12:432:-38.6208,-3.61236,0	1/1:51:0,51:0:0:51:1819:-162.326,-15.3525,0	0/1:13:3,10:3:91:10:360:-28.6534,0,-4.00284	0/1:14:6,7:6:203:7:252:-18.7756,0,-13.0404	1/1:11:0,11:0:0:11:396:-35.7768,-3.31133,0	0/1:184:91,93:91:3147:93:3319:-240.728,0,-218.935	0/1:109:65,43:65:2206:43:1531:-103.799,0,-151.483	1/1:70:0,70:0:0:70:2512:-224.221,-21.0721,0	0/1:5:3,2:3:107:2:72:-5.28437,0,-7.80943	0/1:136:66,70:66:2212:70:2503:-182.856,0,-146.652	1/1:34:0,33:0:0:33:1176:-104.865,-9.93399,0	1/1:78:0,78:0:0:78:2800:-249.385,-23.4803,0	1/1:59:0,58:0:0:58:2033:-180.369,-17.4597,0	0/1:60:28,32:28:947:32:1148:-82.8335,0,-63.3886	1/1:163:0,162:0:0:162:5775:-514.445,-48.7669,0	0/1:104:41,60:41:1392:60:2156:-161.084,0,-83.8423	0/1:158:79,77:79:2711:77:2756:-197.911,0,-183.254	1/1:163:0,162:0:0:162:5798:-516.134,-48.7669,0	0/1:142:67,74:67:2298:74:2630:-192.219,0,-155.293	1/1:137:0,137:0:0:137:4860:-432.718,-41.2411,0	1/1:6:0,6:0:0:6:216:-19.6429,-1.80618,0	0/1:87:49,37:49:1718:37:1324:-92.165,0,-113.711	1/1:61:0,61:0:0:61:2160:-192.273,-18.3628,0	1/1:24:0,24:0:0:24:855:-76.8643,-7.22472,0	1/1:83:0,82:0:0:82:2932:-261.796,-24.6845,0	1/1:70:0,68:0:0:68:2420:-215.667,-20.47,0	1/1:7:0,7:0:0:7:248:-22.4799,-2.10721,0	1/1:28:0,28:0:0:28:1004:-89.9336,-8.42884,0	1/1:36:0,35:0:0:35:1256:-111.231,-10.5361,0	0/1:99:63,35:63:2173:35:1243:-80.7877,0,-156.023	0/1:7:6,1:6:194:1:36:-1.4596,0,-15.0654	0/1:166:93,73:93:3198:73:2608:-182.064,0,-228.881	0/1:156:81,71:81:2787:71:2536:-180.231,0,-193.504	0/1:39:5,33:5:171:33:1176:-92.2329,0,-3.09953	1/1:47:0,47:0:0:47:1684:-150.304,-14.1484,0	0/1:126:74,50:74:2545:50:1796:-120.893,0,-181.588	1/1:64:0,64:0:0:64:2296:-205.163,-19.2659,0	1/1:18:0,18:0:0:18:644:-57.94,-5.41854,0	1/1:65:0,62:0:0:62:2209:-197.113,-18.6639,0	0/1:82:45,36:45:1562:36:1281:-89.59,0,-111.889	0/1:24:16,8:16:535:8:288:-18.813,0,-38.4124	0/1:144:80,63:80:2725:63:2233:-156.177,0,-180.561	0/1:118:53,65:53:1841:65:2312:-170.806,0,-115.332	1/1:241:0,237:0:0:237:8452:-753.279,-71.3441,0	0/1:155:97,58:97:3410:58:2065:-137.77,0,-243.334	1/1:50:0,49:0:0:49:1751:-156.496,-14.7505,0	1/1:69:0,69:0:0:69:2471:-220.841,-20.7711,0	1/1:20:0,20:0:0:20:712:-64.0746,-6.0206,0	1/1:98:0,97:0:0:97:3459:-308.882,-29.1999,0	0/1:62:42,20:42:1433:20:720:-45.8108,0,-99.0495	0/1:202:92,109:92:3216:109:3911:-285.175,0,-215.382	0/1:101:50,51:50:1755:51:1802:-130.418,0,-119.982	0/1:65:28,37:28:979:37:1319:-98.4349,0,-63.6391	0/1:71:43,28:43:1473:28:1004:-68.6046,0,-104.714	0/1:137:65,72:65:2236:72:2572:-188.189,0,-149.82	0/1:49:30,18:30:1047:18:627:-41.2132,0,-68.6407	1/1:54:0,54:0:0:54:1931:-172.531,-16.2556,0	1/1:63:0,62:0:0:62:2220:-197.914,-18.6639,0	1/1:23:0,23:0:0:23:809:-72.6563,-6.92369,0	0/1:108:63,43:63:2155:43:1519:-102.094,0,-149.646	0/1:60:39,21:39:1330:21:756:-49.0215,0,-96.3309	1/1:117:0,116:0:0:116:4153:-369.619,-34.9195,0	1/1:97:0,97:0:0:97:3455:-307.744,-29.1999,0
chr01	1865368	.	TGAAT	CGAAC,TGAAC	138832	PASS	AB=0.509948,0.484542;ABP=5.81852,9.79058;AC=147,41;AF=0.781915,0.218085;AN=188;AO=4993,1595;CIGAR=1X3M1X,4M1X;DP=6620;DPB=6620.8;DPRA=17.7849,1.35671;EPP=10560.4,3414.59;EPPR=9.52472;GTI=2;LEN=5,1;MEANALT=1.78495,2.29787;MQM=59.8716,59.9536;MQMR=60;NS=94;NUMALT=2;ODDS=0.53584;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=74.5,74.5;PQR=0;PRO=0;QA=172231,56503;QR=108;RO=3;RPL=23,0;RPP=10646.3,3466.51;RPPR=9.52472;RPR=4970,1595;RUN=1,1;SAF=56,6;SAP=10364.2,3414.59;SAR=4937,1589;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,28,1:0:0:28,1:967,36:-86.9677,-8.42884,0,-84.0297,-5.1316,-83.7287	1/2:79:0,36,42:0:0:36,42:1212,1482:-218.963,-120.768,-109.931,-98.2767,0,-85.6335	1/1:83:0,83,0:0:0:83,0:2900,0:-261.24,-24.9855,0,-261.24,-24.9855,-261.24	1/1:126:0,125,1:0:0:125,1:4324,36:-388.988,-37.6288,0,-386.051,-34.3315,-385.75	1/1:47:0,47,0:0:0:47,0:1616,0:-145.418,-14.1484,0,-145.418,-14.1484,-145.418	1/1:55:0,54,0:0:0:54,0:1879,0:-169.093,-16.2556,0,-169.093,-16.2556,-169.093	1/1:111:0,111,0:0:0:111,0:3811,0:-343.197,-33.4143,0,-343.197,-33.4143,-343.197	1/1:132:0,131,0:0:0:131,0:4543,0:-408.819,-39.4349,0,-408.819,-39.4349,-408.819	1/1:17:0,17,0:0:0:17,0:582,0:-52.7025,-5.11751,0,-52.7025,-5.11751,-52.7025	1/1:78:0,78,0:0:0:78,0:2695,0:-242.798,-23.4803,0,-242.798,-23.4803,-242.798	1/1:61:0,60,1:0:0:60,1:2030,36:-182.61,-18.0618,0,-179.673,-14.7646,-179.372	1/2:35:0,13,22:0:0:13,22:451,750:-97.8544,-61.1915,-57.2781,-37.0075,0,-30.3848	1/2:51:0,25,25:0:0:25,25:874,900:-144.531,-73.4354,-65.9097,-71.091,0,-63.5653	1/2:68:0,38,30:0:0:38,30:1319,1067:-194.521,-87.3103,-75.8712,-107.563,0,-98.5317	1/2:70:0,39,31:0:0:39,31:1352,1087:-198.694,-88.8065,-77.0663,-110.237,0,-100.905	1/1:52:0,51,0:0:0:51,0:1750,0:-157.471,-15.3525,0,-157.471,-15.3525,-157.471	1/1:59:0,59,0:0:0:59,0:2029,0:-182.88,-17.7608,0,-182.88,-17.7608,-182.88	1/2:50:0,27,23:0:0:27,23:943,815:-143.449,-66.7467,-58.6189,-77.054,0,-70.1303	1/1:38:0,38,0:0:0:38,0:1309,0:-118.107,-11.4391,0,-118.107,-11.4391,-118.107	1/1:132:0,131,0:0:0:131,0:4487,0:-403.751,-39.4349,0,-403.751,-39.4349,-403.751	1/2:84:0,31,53:0:0:31,53:1090,1863:-240.688,-151.991,-142.659,-89.0489,0,-73.0943	1/2:69:0,32,36:0:0:32,36:1116,1275:-194.618,-103.856,-94.2226,-90.7546,0,-79.9175	1/1:19:0,19,0:0:0:19,0:648,0:-58.6381,-5.71957,0,-58.6381,-5.71957,-58.6381	1/2:82:0,45,37:0:0:45,37:1542,1319:-232.985,-107.814,-94.2681,-125.463,0,-114.325	1/1:35:0,35,0:0:0:35,0:1210,0:-109.157,-10.5361,0,-109.157,-10.5361,-109.157	1/1:225:0,224,0:0:0:224,0:7731,0:-695.543,-67.4307,0,-695.543,-67.4307,-695.543	1/2:171:0,83,88:0:0:83,88:2863,3136:-488.494,-255.92,-230.935,-232.868,0,-206.377	1/1:22:0,22,0:0:0:22,0:779,0:-70.4334,-6.62266,0,-70.4334,-6.62266,-70.4334	1/1:163:0,163,0:0:0:163,0:5553,0:-499.915,-49.0679,0,-499.915,-49.0679,-499.915	1/1:110:0,109,1:0:0:109,1:3745,36:-336.82,-32.8123,0,-333.883,-29.515,-333.582	1/2:42:1,29,12:1:36:29,12:968,428:-109.989,-31.9492,-26.157,-75.3937,0,-74.7196	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:6:0,6,0:0:0:6,0:194,0:-17.7777,-1.80618,0,-17.7777,-1.80618,-17.7777	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/1:5:0,5,0:0:0:5,0:177,0:-16.277,-1.50515,0,-16.277,-1.50515,-16.277	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:133:0,63,70:0:0:63,70:2130,2449:-372.248,-199.591,-180.626,-173.001,0,-151.929	1/2:139:0,64,75:0:0:64,75:2243,2683:-401.566,-219.137,-199.871,-182.783,0,-160.205	1/1:68:0,68,0:0:0:68,0:2348,0:-211.579,-20.47,0,-211.579,-20.47,-211.579	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/2:94:0,50,44:0:0:50,44:1733,1580:-270.095,-129.246,-114.195,-141.202,0,-127.957	1/1:39:0,39,0:0:0:39,0:1374,0:-123.959,-11.7402,0,-123.959,-11.7402,-123.959	1/1:101:0,101,0:0:0:101,0:3483,0:-313.494,-30.404,0,-313.494,-30.404,-313.494	1/1:32:0,32,0:0:0:32,0:1106,0:-99.8451,-9.63296,0,-99.8451,-9.63296,-99.8451	1/2:61:0,31,30:0:0:31,30:1063,1060:-172.976,-86.6804,-77.3484,-86.6435,0,-77.6126	1/1:48:0,47,1:0:0:47,1:1587,36:-142.755,-14.1484,0,-139.817,-10.8512,-139.516	1/2:111:0,49,62:0:0:49,62:1673,2206:-315.897,-180.14,-165.39,-136.104,0,-117.44	1/2:107:0,66,41:0:0:66,41:2272,1451:-303.067,-118.543,-98.675,-184.874,0,-172.532	1/1:96:0,95,0:0:0:95,0:3307,0:-297.495,-28.5979,0,-297.495,-28.5979,-297.495	1/2:106:0,50,54:0:0:50,54:1751,1919:-298.91,-156.439,-141.387,-142.531,0,-126.275	1/1:126:0,125,0:0:0:125,0:4301,0:-387.072,-37.6288,0,-387.072,-37.6288,-387.072	1/1:4:0,4,0:0:0:4,0:135,0:-12.4835,-1.20412,0,-12.4835,-1.20412,-12.4835	1/2:114:0,58,56:0:0:58,56:1987,2003:-324.977,-163.685,-146.225,-161.642,0,-144.784	1/1:40:0,40,0:0:0:40,0:1393,0:-125.665,-12.0412,0,-125.665,-12.0412,-125.665	1/1:12:0,12,0:0:0:12,0:419,0:-38.0437,-3.61236,0,-38.0437,-3.61236,-38.0437	1/1:105:0,104,0:0:0:104,0:3601,0:-323.965,-31.3071,0,-323.965,-31.3071,-323.965	1/1:23:0,23,0:0:0:23,0:786,0:-71.0521,-6.92369,0,-71.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chr01	1918590	.	G	A	12224.1	PASS	AB=0.47663;ABP=10.724;AC=38;AF=0.204301;AN=186;AO=777;CIGAR=1X;DP=3382;DPB=3382;DPRA=1.35993;EPP=1690.24;EPPR=5655.35;GTI=0;LEN=1;MEANALT=1.025;MQM=59.4672;MQMR=59.9566;NS=93;NUMALT=1;ODDS=0.849128;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27434;QR=92652;RO=2603;RPL=0;RPP=1690.24;RPPR=5655.35;RPR=777;RUN=1;SAF=777;SAP=1690.24;SAR=0;SRF=2603;SRP=5655.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:23:15,8:15:540:8:284:-18.9714,0,-42.0128	0/0:48:47,0:47:1683:0:0:0,-14.1484,-151.36	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.658	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6551	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.916	0/0:55:55,0:55:1916:0:0:0,-16.5566,-172.71	0/1:36:15,21:15:540:21:752:-57.1601,0,-38.0995	0/1:33:12,21:12:432:21:748:-57.6241,0,-29.2872	0/1:55:30,25:30:1076:25:880:-62.9611,0,-80.5962	0/1:37:21,16:21:756:16:576:-41.0353,0,-57.2282	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/1:14:7,7:7:248:7:244:-18.0817,0,-18.4498	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/1:24:11,13:11:392:13:458:-34.3006,0,-28.3953	0/1:21:9,12:9:324:12:428:-32.5363,0,-23.1842	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:114:114,0:114:3994:0:0:0,-34.3174,-359.616	0/1:48:25,23:25:896:23:823:-59.8975,0,-66.5109	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:80:80,0:80:2826:0:0:0,-24.0824,-254.577	0/1:44:18,26:18:644:26:917:-69.5886,0,-45.0453	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/1:83:37,46:37:1328:46:1648:-123.62,0,-94.8367	0/1:41:21,20:21:752:20:692:-50.2591,0,-55.664	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.814	.:.:.:.:.:.:.:.	0/1:30:17,13:17:612:13:468:-33.4241,0,-46.3825	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5603	0/1:18:11,7:11:396:7:248:-17.2433,0,-30.5642	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:30:12,18:12:432:18:624:-47.4514,0,-30.1903	0/1:39:20,19:20:712:19:680:-49.789,0,-52.6665	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.343	0/1:56:37,19:37:1309:19:680:-44.6669,0,-101.252	0/0:34:34,0:34:1194:0:0:0,-10.235,-107.761	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:62:31,31:31:1108:31:1093:-79.9168,0,-81.3671	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9098	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5049	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/1:74:35,39:35:1248:39:1384:-102.474,0,-90.3486	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:145:89,56:89:3177:56:1951:-132.202,0,-242.504	0/1:55:27,28:27:968:28:966:-70.6802,0,-70.8807	0/0:32:31,1:31:1116:1:32:0,-6.43365,-97.5515	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9585	0/1:23:11,12:11:396:12:424:-31.5423,0,-29.0567	0/0:55:54,1:54:1944:1:36:0,-12.9584,-171.638	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/1:34:21,13:21:752:13:468:-32.2228,0,-57.7712	0/1:26:12,14:12:413:14:500:-37.5094,0,-29.671	0/1:54:20,34:20:720:34:1147:-87.1046,0,-48.8732	0/1:38:17,21:17:597:21:744:-55.8452,0,-42.617	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:101:57,44:57:2032:44:1552:-109.563,0,-152.748	0/0:55:55,0:55:1941:0:0:0,-16.5566,-174.964	0/0:71:71,0:71:2502:0:0:0,-21.3731,-225.427	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.875	0/1:23:9,14:9:309:14:500:-38.4125,0,-21.217	0/1:46:30,16:30:1053:16:564:-37.2406,0,-81.2312	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	0/1:39:23,16:23:801:16:549:-37.9913,0,-60.6665	0/1:18:10,8:10:360:8:269:-19.0999,0,-27.3258	0/1:57:36,21:36:1292:21:756:-51.1293,0,-99.4251	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	0/1:125:64,60:64:2285:60:2133:-154.543,0,-168.222	0/1:16:7,9:7:248:9:320:-24.3212,0,-17.8477	0/0:68:68,0:68:2410:0:0:0,-20.47,-217.154	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754
chr01	1976956	.	A	G	30815.7	PASS	AB=0.501239;ABP=3.05871;AC=42;AF=0.223404;AN=188;AO=1836;CIGAR=1X;DP=7748;DPB=7748;DPRA=1.13221;EPP=3809.52;EPPR=12199.3;GTI=1;LEN=1;MEANALT=1.13043;MQM=59.9624;MQMR=59.9876;NS=94;NUMALT=1;ODDS=1.74315;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64620;QR=210764;RO=5905;RPL=1818;RPP=3835.02;RPPR=12224.8;RPR=18;RUN=1;SAF=3;SAP=3963.82;SAR=1833;SRF=3;SRP=12799.5;SRR=5902;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:92:44,48:44:1572:48:1688:-124.32,0,-114.077	0/0:142:142,0:142:5076:0:0:0,-42.7463,-456.985	0/0:112:112,0:112:3994:0:0:0,-33.7154,-359.65	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:172:172,0:172:6144:0:0:0,-51.7772,-553.061	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946	0/0:64:62,1:62:2204:1:36:0,-15.7065,-195.047	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/1:146:73,73:73:2607:73:2554:-186.159,0,-190.927	0/1:109:48,61:48:1711:61:2142:-160.235,0,-121.463	0/1:89:43,46:43:1540:46:1610:-118.396,0,-112.101	0/1:97:44,52:44:1580:52:1837:-136.347,0,-113.233	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.367	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:49:26,23:26:928:23:816:-58.9975,0,-69.0878	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:155:155,0:155:5552:0:0:0,-46.6596,-499.804	0/1:166:87,78:87:3076:78:2755:-198.162,0,-227.039	0/1:54:20,34:20:701:34:1198:-91.8684,0,-47.1561	0/0:90:90,0:90:3203:0:0:0,-27.0927,-288.494	0/1:34:18,16:18:639:16:568:-41.2168,0,-47.6032	0/0:92:92,0:92:3280:0:0:0,-27.6948,-295.421	0/0:182:181,0:181:6450:0:0:0,-54.4864,-580.332	0/1:204:103,101:103:3662:101:3540:-257.403,0,-268.375	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:140:140,0:140:4998:0:0:0,-42.1442,-449.968	0/0:88:88,0:88:3131:0:0:0,-26.4906,-282.017	0/1:118:72,46:72:2571:46:1610:-109.663,0,-196.118	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:3:0,3:0:0:3:100:-9.33044,-0.90309,0	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:221:100,121:100:3575:121:4254:-316.514,0,-255.429	0/1:58:19,39:19:684:39:1370:-106.137,0,-44.4306	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:36:17,19:17:608:19:680:-50.6921,0,-44.2149	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.894	0/0:149:149,0:149:5316:0:0:0,-44.8535,-478.349	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/1:65:29,36:29:1031:36:1265:-94.5834,0,-73.5357	0/0:54:54,0:54:1917:0:0:0,-16.2556,-172.805	0/1:76:39,37:39:1383:37:1311:-95.4126,0,-101.89	0/1:142:68,74:68:2416:74:2574:-189.163,0,-174.951	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.911	0/1:125:74,51:74:2631:51:1788:-123.574,0,-199.409	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/1:106:67,38:67:2375:38:1332:-88.2106,0,-182.04	0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.37	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:72:71,1:71:2531:1:27:0,-18.9744,-225.341	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:35:35,0:35:1231:0:0:0,-10.536,-111.093	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.623	0/1:114:68,46:68:2436:46:1611:-110.961,0,-185.178	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:111:62,49:62:2220:49:1704:-120.226,0,-166.649	0/1:122:58,64:58:2067:64:2284:-169.096,0,-149.575	0/0:78:72,6:72:2558:6:212:0,-4.05554,-211.045	0/0:55:54,1:54:1928:1:32:0,-13.3573,-170.597	0/1:92:36,56:36:1287:56:1967:-149.61,0,-88.438	0/0:127:124,3:124:4403:3:108:0,-28.1556,-386.368	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:63:25,38:25:892:38:1346:-102.474,0,-61.6348	0/1:38:20,18:20:707:18:622:-44.8623,0,-52.5154	0/1:45:18,27:18:648:27:935:-70.9152,0,-45.1055	0/1:78:39,39:39:1400:39:1380:-101.018,0,-102.819	0/0:178:178,0:178:6355:0:0:0,-53.5833,-572.038	0/1:120:62,58:62:2224:58:2051:-148.737,0,-164.301	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.037	0/0:136:136,0:136:4864:0:0:0,-40.9401,-437.914	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:103:103,0:103:3676:0:0:0,-31.0061,-331.044	0/1:74:44,30:44:1567:30:1076:-74.8766,0,-119.044	0/1:136:61,75:61:2172:75:2649:-197.713,0,-154.804	0/1:69:35,34:35:1243:34:1207:-88.1642,0,-91.4028	0/1:87:37,50:37:1319:50:1766:-133.032,0,-92.8216	0/1:67:31,36:31:1108:36:1257:-93.261,0,-79.862	0/1:173:92,80:92:3291:80:2831:-202.893,0,-244.272	0/1:30:16,13:16:576:13:455:-32.23,0,-43.1228	0/0:86:86,0:86:3067:0:0:0,-25.8886,-276.259	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/0:91:91,0:91:3267:0:0:0,-27.3937,-294.249	0/1:118:69,49:69:2447:49:1729:-120.372,0,-184.964	0/1:79:25,54:25:896:54:1915:-148.845,0,-57.179	0/0:101:101,0:101:3619:0:0:0,-30.404,-325.915	0/0:164:164,0:164:5869:0:0:0,-49.3689,-528.25
chr01	1981173	.	AGA	TGA	117724	PASS	AB=0.50074;ABP=3.02638;AC=148;AF=0.795699;AN=186;AO=5535;CIGAR=1X2M;DP=7237;DPB=7237;DPRA=0;EPP=12022.1;EPPR=3659.77;GTI=3;LEN=1;MEANALT=1.15054;MQM=59.9942;MQMR=60;NS=93;NUMALT=1;ODDS=0.852725;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198212;QR=59211;RO=1684;RPL=0;RPP=12022.1;RPPR=3659.77;RPR=5535;RUN=1;SAF=5535;SAP=12022.1;SAR=0;SRF=1684;SRP=3659.77;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1065:-96.1598,-9.0309,0	0/1:86:41,45:41:1455:45:1616:-119.841,0,-105.358	1/1:301:0,301:0:0:301:10764:-968.66,-90.61,0	1/1:141:0,141:0:0:141:5027:-452.575,-42.4452,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:39:0,39:0:0:39:1389:-125.307,-11.7402,0	1/1:52:1,51:1:36:51:1814:-159.943,-12.0553,0	1/1:133:0,133:0:0:133:4776:-429.995,-40.037,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:55:0,54:0:0:54:1936:-174.264,-16.2556,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:75:45,30:45:1596:30:1072:-74.2152,0,-121.353	0/1:55:27,28:27:956:28:1008:-74.4797,0,-69.7989	0/1:76:28,48:28:989:48:1728:-132.927,0,-66.4467	0/1:35:20,15:20:713:15:540:-38.4005,0,-53.9612	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:20:10,10:10:356:10:360:-26.7237,0,-26.3609	1/1:23:0,23:0:0:23:807:-72.9477,-6.92369,0	1/1:243:0,242:0:0:242:8662:-779.253,-72.8493,0	0/1:74:38,36:38:1308:36:1288:-93.9474,0,-95.7416	0/1:98:63,35:63:2214:35:1256:-83.8443,0,-170.025	1/1:83:0,83:0:0:83:2968:-267.353,-24.9855,0	0/1:48:26,22:26:913:22:792:-57.1562,0,-68.0374	1/1:48:0,44:0:0:44:1584:-142.492,-13.2453,0	1/1:178:0,178:0:0:178:6376:-573.929,-53.5833,0	0/1:183:98,85:98:3445:85:3044:-219.101,0,-255.181	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:135:0,135:0:0:135:4824:-434.316,-40.6391,0	1/1:160:1,158:1:31:158:5633:-503.875,-45.0593,0	0/1:107:52,55:52:1829:55:1964:-144.825,0,-132.682	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:98:53,44:53:1886:44:1580:-112.932,0,-140.459	0/1:139:73,66:73:2534:66:2376:-172.254,0,-186.469	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	.:.:.:.:.:.:.:.	0/1:144:63,79:63:2200:79:2840:-212.727,0,-155.159	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:117:0,116:0:0:116:4164:-374.582,-34.9195,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:35:19,16:19:666:16:572:-41.2774,0,-49.7287	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	0/1:90:49,41:49:1725:41:1460:-104.603,0,-128.442	0/1:130:56,74:56:1956:74:2656:-200.152,0,-137.182	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	0/1:116:57,59:57:1987:59:2107:-154.979,0,-144.185	1/1:92:0,92:0:0:92:3297:-296.949,-27.6948,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:198:94,104:94:3331:104:3740:-277.195,0,-240.406	1/1:72:0,72:0:0:72:2592:-233.528,-21.6742,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:163:0,163:0:0:163:5848:-526.43,-49.0679,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	0/1:87:48,39:48:1663:39:1404:-100.47,0,-123.766	0/1:5:4,1:4:142:1:36:-2.09312,0,-11.6241	1/1:148:0,148:0:0:148:5312:-478.213,-44.5524,0	0/1:156:81,75:81:2810:75:2688:-195.204,0,-206.182	0/1:67:7,60:7:246:60:2148:-173.418,0,-2.31312	1/1:119:0,119:0:0:119:4276:-385.016,-35.8226,0	0/1:152:79,73:79:2777:73:2620:-190.291,0,-204.418	1/1:115:1,114:1:36:114:4088:-364.507,-31.0202,0	1/1:29:0,29:0:0:29:1020:-92.1094,-8.72987,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	0/1:29:15,14:15:534:14:504:-36.9682,0,-39.6644	0/1:35:14,21:14:498:21:756:-57.8312,0,-34.6195	0/1:120:66,54:66:2339:54:1944:-139.112,0,-174.646	0/1:49:24,25:24:856:25:885:-65.2161,0,-62.6111	1/1:139:0,137:0:0:137:4893:-440.162,-41.2411,0	0/1:166:86,80:86:3012:80:2876:-209.105,0,-221.343	1/1:107:0,107:0:0:107:3821:-344.086,-32.2102,0	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:92:2,90:2:70:90:3213:-282.745,-21.0474,0	0/1:115:53,59:53:1871:59:2116:-156.681,0,-134.642	0/1:207:85,121:85:2980:121:4340:-328.402,0,-206.063	0/1:48:25,23:25:879:23:824:-60.0339,0,-64.9781	0/1:58:28,30:28:1002:30:1080:-80.0535,0,-73.0362	0/1:30:18,12:18:640:12:428:-29.8279,0,-48.8988	0/1:86:42,44:42:1467:44:1560:-114.803,0,-106.435	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:53:0,53:0:0:53:1889:-170.287,-15.9546,0	1/1:35:0,34:0:0:34:1207:-108.576,-10.235,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/1:83:39,44:39:1384:44:1580:-117.506,0,-99.8739	0/1:60:46,14:46:1627:14:500:-27.2744,0,-128.658	1/1:113:0,113:0:0:113:4061:-365.675,-34.0164,0	1/1:43:0,43:0:0:43:1535:-138.442,-12.9443,0
chr01	2037293	.	C	A	126147	PASS	AB=0.487327;ABP=7.85358;AC=148;AF=0.787234;AN=188;AO=5875;CIGAR=1X;DP=7659;DPB=7659;DPRA=0;EPP=12656.4;EPPR=3796.97;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.7935;MQMR=59.8026;NS=94;NUMALT=1;ODDS=3.3794;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210519;QR=63800;RO=1783;RPL=12;RPP=12656.4;RPPR=3796.97;RPR=5863;RUN=1;SAF=5875;SAP=12760.4;SAR=0;SRF=1783;SRP=3874.75;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:77:0,77:0:0:77:2761:-248.729,-23.1793,0	0/1:62:32,30:32:1135:30:1076:-78.4847,0,-83.7942	1/1:135:0,135:0:0:135:4832:-435.021,-40.6391,0	1/1:185:0,185:0:0:185:6631:-596.713,-55.6906,0	1/1:75:0,75:0:0:75:2700:-243.234,-22.5773,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:83:0,83:0:0:83:2988:-269.146,-24.9855,0	1/1:127:0,127:0:0:127:4534:-408.225,-38.2308,0	1/1:131:0,131:0:0:131:4698:-422.96,-39.4349,0	1/1:43:0,43:0:0:43:1544:-139.244,-12.9443,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:81:41,40:41:1476:40:1439:-105.424,0,-108.752	0/1:58:27,31:27:953:31:1116:-83.2838,0,-68.6156	0/1:55:26,29:26:924:29:1044:-77.7135,0,-66.9204	0/1:41:14,27:14:495:27:972:-75.4529,0,-32.5408	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:11:0,11:0:0:11:388:-35.2558,-3.31133,0	0/1:23:13,10:13:468:10:360:-25.8144,0,-35.535	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:192:1,191:1:36:191:6818:-610.085,-54.1995,0	0/1:174:79,95:79:2828:95:3414:-255.038,0,-202.378	0/1:159:114,45:114:4076:45:1608:-97.1371,0,-319.148	1/1:104:0,104:0:0:104:3740:-336.772,-31.3071,0	0/1:64:21,43:21:756:43:1536:-119.261,0,-49.0982	1/1:152:0,152:0:0:152:5432:-488.953,-45.7566,0	1/1:220:0,220:0:0:220:7916:-712.443,-66.2266,0	0/1:248:126,122:126:4517:122:4368:-318.593,0,-332.036	1/1:14:0,14:0:0:14:504:-45.6919,-4.21442,0	1/1:183:0,183:0:0:183:6577:-592.003,-55.0885,0	1/1:101:0,101:0:0:101:3613:-325.37,-30.404,0	0/1:124:73,51:73:2612:51:1818:-126.564,0,-197.442	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	1/1:21:0,21:0:0:21:756:-68.3663,-6.32163,0	0/1:126:50,76:50:1792:76:2721:-207.179,0,-123.63	0/1:144:68,76:68:2424:76:2721:-201.765,0,-175.065	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:102:56,46:56:2016:46:1652:-118.219,0,-151.006	1/1:18:0,18:0:0:18:648:-58.6457,-5.41854,0	1/1:174:0,174:0:0:174:6220:-559.868,-52.3792,0	1/1:26:0,26:0:0:26:928:-83.808,-7.82678,0	0/1:29:13,16:13:464:16:572:-42.4533,0,-33.3672	1/1:143:0,143:0:0:143:5095:-458.353,-43.0473,0	0/1:116:55,61:55:1972:61:2166:-160.196,0,-141.598	0/1:149:74,75:74:2660:75:2696:-198.028,0,-194.783	1/1:82:0,82:0:0:82:2933:-264.198,-24.6845,0	0/1:49:26,23:26:936:23:828:-60.0936,0,-69.789	1/1:141:0,141:0:0:141:5061:-455.584,-42.4452,0	1/1:14:0,14:0:0:14:491:-44.5207,-4.21442,0	0/1:174:85,89:85:3060:89:3200:-235.836,0,-223.139	1/1:54:0,54:0:0:54:1925:-173.516,-16.2556,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:134:0,134:0:0:134:4764:-428.697,-40.338,0	1/1:48:0,48:0:0:48:1694:-152.742,-14.4494,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:74:0,74:0:0:74:2664:-239.997,-22.2762,0	0/1:94:46,47:46:1648:47:1688:-123.846,0,-120.197	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	1/1:118:0,118:0:0:118:4233:-381.136,-35.5215,0	0/1:162:79,83:79:2832:83:2973:-219.027,0,-206.35	1/1:49:3,46:3:104:46:1641:-138.256,-5.04766,0	1/1:58:0,58:0:0:58:2082:-187.649,-17.4597,0	0/1:122:50,72:50:1769:72:2580:-195.724,0,-122.766	1/1:153:0,153:0:0:153:5488:-494.03,-46.0576,0	1/1:14:0,14:0:0:14:500:-45.1065,-4.21442,0	1/1:78:0,78:0:0:78:2808:-252.955,-23.4803,0	0/1:33:18,15:18:648:15:540:-38.9998,0,-48.717	0/1:21:17,4:17:612:4:144:-6.99158,0,-49.0918	0/1:219:115,104:115:4101:104:3717:-268.805,0,-303.289	0/1:52:25,27:25:891:27:968:-71.7719,0,-64.8543	1/1:186:0,186:0:0:186:6668:-600.047,-55.9916,0	0/1:112:56,56:56:2012:56:2016:-147.995,0,-147.637	1/1:125:0,125:0:0:125:4480:-403.289,-37.6288,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:119:0,119:0:0:119:4276:-385.006,-35.8226,0	0/1:87:48,39:48:1724:39:1394:-99.5674,0,-129.242	0/1:202:99,103:99:3531:103:3692:-271.674,0,-257.174	0/1:56:32,24:32:1152:24:864:-61.2233,0,-87.1317	0/1:54:29,25:29:1044:25:895:-64.613,0,-78.0164	0/1:26:17,9:17:604:9:324:-21.6791,0,-46.8638	0/1:81:53,28:53:1881:28:1004:-66.2897,0,-145.18	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6259	1/1:42:0,42:0:0:42:1512:-136.354,-12.6433,0	1/1:44:0,44:0:0:44:1576:-142.125,-13.2453,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:75:43,32:43:1544:32:1133:-79.6871,0,-116.672	0/1:37:25,12:25:887:12:428:-27.7207,0,-69.01	1/1:82:0,82:0:0:82:2945:-265.268,-24.6845,0	1/1:58:0,58:0:0:58:2084:-187.825,-17.4597,0
chr01	2037302	.	A	G	29666.3	PASS	AB=0.510116;ABP=6.08551;AC=40;AF=0.212766;AN=188;AO=1769;CIGAR=1X;DP=7640;DPB=7640;DPRA=1.16085;EPP=3844.34;EPPR=12734.4;GTI=0;LEN=1;MEANALT=1.09524;MQM=59.7739;MQMR=59.7963;NS=94;NUMALT=1;ODDS=3.67085;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63010;QR=210651;RO=5867;RPL=1769;RPP=3844.34;RPPR=12734.4;RPR=0;RUN=1;SAF=1769;SAP=3844.34;SAR=0;SRF=5867;SRP=12743;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.954	0/1:62:31,31:31:1116:31:1112:-81.7275,0,-82.0836	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.739	0/0:185:185,0:185:6652:0:0:0,-55.6905,-598.598	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.113	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.708	0/0:127:127,0:127:4568:0:0:0,-38.2308,-411.283	0/0:128:128,0:128:4604:0:0:0,-38.5318,-414.5	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.365	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:83:40,43:40:1440:43:1529:-112.915,0,-104.911	0/1:57:31,26:31:1108:26:917:-65.6796,0,-82.8641	0/1:55:29,26:29:1040:26:919:-66.4689,0,-77.3531	0/1:41:27,14:27:972:14:504:-33.3559,0,-75.4529	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9765	0/1:23:11,12:11:396:12:432:-32.2966,0,-29.0528	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:189:188,1:188:6752:1:36:0,-53.2964,-604.146	0/1:174:95,78:95:3420:78:2788:-198.721,0,-255.468	0/1:158:47,111:47:1692:111:3984:-311.18,0,-104.992	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.533	0/1:64:43,21:43:1548:21:746:-48.1962,0,-120.334	0/0:153:153,0:153:5480:0:0:0,-46.0576,-493.191	0/0:221:221,0:221:7932:0:0:0,-66.5276,-713.885	0/1:245:117,128:117:4212:128:4572:-337.89,0,-305.4	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.33	0/0:182:182,0:182:6529:0:0:0,-54.7875,-587.684	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.243	0/1:127:51,76:51:1836:76:2696:-204.425,0,-127.276	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	0/1:26:13,13:13:468:13:464:-34.2707,0,-34.6329	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7674	0/1:125:75,48:75:2696:48:1716:-117.336,0,-205.475	0/1:146:77,69:77:2772:69:2431:-175.09,0,-205.752	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:103:47,56:47:1684:56:2004:-149.625,0,-120.796	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2844	0/0:175:175,0:175:6280:0:0:0,-52.6802,-565.265	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1281	0/1:29:16,13:16:576:13:459:-32.9138,0,-42.8148	0/0:144:144,0:144:5161:0:0:0,-43.3483,-464.291	0/1:113:59,54:59:2108:54:1909:-137.49,0,-155.879	0/1:151:76,75:76:2736:75:2654:-193.64,0,-201.024	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.144	0/1:49:23,26:23:828:26:936:-69.789,0,-60.0936	0/0:140:140,0:140:4997:0:0:0,-42.1442,-449.847	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6977	0/1:170:88,82:88:3164:82:2929:-212.497,0,-233.803	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.156	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:132:132,0:132:4735:0:0:0,-39.736,-426.05	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.637	0/1:93:47,46:47:1688:46:1612:-117.357,0,-124.206	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.884	0/1:162:83,79:83:2988:79:2790:-202.57,0,-220.377	0/0:48:45,3:45:1608:3:108:0,-4.37427,-134.917	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.187	0/1:123:73,50:73:2620:50:1787:-124.085,0,-199.021	0/0:153:153,0:153:5500:0:0:0,-46.0576,-495.109	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.1071	0/0:79:79,0:79:2816:0:0:0,-23.7814,-253.674	0/1:33:15,17:15:536:17:612:-45.5612,0,-38.7199	0/1:21:4,17:4:144:17:612:-49.0918,0,-6.99158	0/1:217:103,114:103:3700:114:4074:-301.185,0,-267.877	0/1:51:26,25:26:936:25:878:-63.9824,0,-69.2012	0/0:185:185,0:185:6633:0:0:0,-55.6905,-596.763	0/1:114:58,56:58:2088:56:2006:-146.495,0,-153.87	0/0:127:127,0:127:4556:0:0:0,-38.2308,-410.119	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.767	0/1:86:39,47:39:1400:47:1681:-125.676,0,-100.407	0/1:199:103,96:103:3699:96:3433:-249.245,0,-273.205	0/1:55:24,31:24:864:31:1079:-80.8575,0,-61.5244	0/1:53:25,28:25:900:28:999:-74.2676,0,-65.3618	0/1:26:9,17:9:324:17:608:-47.2252,0,-21.6791	0/1:78:28,50:28:1008:50:1785:-137.448,0,-67.5533	0/1:17:7,10:7:252:10:360:-27.6259,0,-17.9114	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.274	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.606	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:74:32,42:32:1140:42:1504:-113.372,0,-80.6216	0/1:38:12,26:12:428:26:917:-71.4055,0,-27.4197	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.538	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.708
chr01	2037435	.	AATA	GATA,GATG	239109	PASS	AB=0.491828,0.504352;ABP=5.74319,3.78513;AC=146,40;AF=0.784946,0.215054;AN=186;AO=8798,2400;CIGAR=1X3M,1X2M1X;DP=11242;DPB=11242;DPRA=24.4283,1.646;EPP=19107.6,5214.54;EPPR=9.52472;GTI=1;LEN=1,4;MEANALT=1.94565,2.36538;MQM=59.6287,52.5154;MQMR=60;NS=93;NUMALT=2;ODDS=2.9404;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=311624,83667;QR=101;RO=3;RPL=0,0;RPP=19107.6,5214.54;RPPR=9.52472;RPR=8798,2400;RUN=1,1;SAF=0,0;SAP=19107.6,5214.54;SAR=8798,2400;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:79:0,79,0:0:0:79,0:2803,0:-252.443,-23.7814,0,-252.443,-23.7814,-252.443	1/2:250:0,126,123:0:0:126,123:4473,4278:-710.363,-346.185,-308.255,-364.17,0,-327.143	1/1:173:0,172,0:0:0:172,0:6094,0:-548.162,-51.7772,0,-548.162,-51.7772,-548.162	1/1:300:0,300,0:0:0:300,0:10653,0:-958.607,-90.309,0,-958.607,-90.309,-958.607	1/1:78:0,77,1:0:0:77,1:2743,35:-246.75,-23.1793,0,-243.906,-19.9858,-243.605	1/1:95:0,95,0:0:0:95,0:3373,0:-303.748,-28.5979,0,-303.748,-28.5979,-303.748	1/1:151:0,150,1:0:0:150,1:5362,36:-482.326,-45.1545,0,-479.395,-41.8641,-479.094	1/1:301:0,300,0:0:0:300,0:10649,0:-957.861,-90.309,0,-957.861,-90.309,-957.861	1/1:197:0,195,0:0:0:195,0:6841,0:-615.097,-58.7009,0,-615.097,-58.7009,-615.097	1/1:143:0,142,0:0:0:142,0:5079,0:-456.872,-42.7463,0,-456.872,-42.7463,-456.872	1/1:16:0,16,0:0:0:16,0:552,0:-50.0029,-4.81648,0,-50.0029,-4.81648,-50.0029	1/2:34:0,14,20:0:0:14,20:500,685:-96.5917,-55.8222,-51.6077,-41.1202,0,-35.0996	1/2:31:0,12,19:0:0:12,19:428,664:-89.1084,-54.2153,-50.603,-35.2464,0,-29.5269	1/2:28:0,13,15:0:0:13,15:455,525:-79.7945,-43.0045,-39.0911,-37.1386,0,-32.6232	1/2:30:0,21,9:0:0:21,9:744,313:-86.3709,-25.7574,-19.4358,-60.9627,0,-58.2534	1/1:32:0,32,0:0:0:32,0:1140,0:-102.909,-9.63296,0,-102.909,-9.63296,-102.909	1/1:32:0,32,0:0:0:32,0:1148,0:-103.613,-9.63296,0,-103.613,-9.63296,-103.613	1/2:29:0,16,13:0:0:16,13:557,456:-82.4747,-37.375,-32.5585,-45.4482,0,-41.5348	1/1:10:0,10,0:0:0:10,0:351,0:-31.9184,-3.0103,0,-31.9184,-3.0103,-31.9184	1/1:254:0,253,1:0:0:253,1:8937,35:-803.332,-76.1606,0,-800.489,-72.9684,-800.188	1/2:148:0,82,64:0:0:82,64:2870,2224:-413.997,-180.513,-155.828,-233.507,0,-214.241	1/2:203:0,64,139:0:0:64,139:2260,4855:-578.264,-394.223,-374.957,-184.392,0,-142.549	1/1:224:0,224,0:0:0:224,0:7942,0:-714.736,-67.4307,0,-714.736,-67.4307,-714.736	1/2:216:0,94,122:0:0:94,122:3332,4241:-615.417,-343.982,-315.685,-271.786,0,-235.06	1/1:114:0,113,0:0:0:113,0:3989,0:-358.708,-34.0164,0,-358.708,-34.0164,-358.708	1/1:479:0,476,1:0:0:476,1:16854,36:-1515.95,-143.29,0,-1513.02,-140.357,-1512.72	1/2:200:0,102,98:0:0:102,98:3634,3458:-577.132,-280.931,-250.226,-296.555,0,-267.055	1/1:28:0,28,0:0:0:28,0:985,0:-88.9615,-8.42884,0,-88.9615,-8.42884,-88.9615	1/1:301:0,300,1:0:0:300,1:10683,36:-960.834,-90.309,0,-957.901,-87.0169,-957.6	1/1:298:0,296,1:0:0:296,1:10549,36:-948.85,-89.1049,0,-945.917,-86.1721,-945.616	1/2:226:0,117,108:0:0:117,108:4147,3768:-643.559,-305.753,-270.533,-337.866,0,-305.354	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	.:.:.:.:.:.:.:.	2/2:5:0,0,5:0:0:0,5:0,173:-15.8687,-15.8687,-15.8687,-1.50515,-1.50515,0	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:87:1,40,46:1:36:40,46:1401,1612:-241.604,-128.041,-118.937,-110.917,0,-100.007	1/2:348:0,160,182:0:0:160,182:5592,6196:-956.368,-501.557,-453.393,-454.893,0,-400.105	1/1:14:0,14,0:0:0:14,0:496,0:-44.971,-4.21442,0,-44.971,-4.21442,-44.971	1/2:4:0,3,1:0:0:3,1:108,36:-12.1048,-3.29214,-2.38905,-9.17208,0,-8.87105	1/2:220:0,99,121:0:0:99,121:3502,4256:-630.482,-345.251,-315.449,-285.584,0,-249.159	1/1:10:0,10,0:0:0:10,0:348,0:-31.6551,-3.0103,0,-31.6551,-3.0103,-31.6551	1/1:192:0,191,0:0:0:191,0:6716,0:-604.13,-57.4967,0,-604.13,-57.4967,-604.13	1/1:23:0,23,0:0:0:23,0:796,0:-71.955,-6.92369,0,-71.955,-6.92369,-71.955	1/2:38:0,18,20:0:0:18,20:629,679:-106.359,-55.1877,-49.7691,-51.5152,0,-45.4946	1/1:198:1,195,2:1:36:195,2:6899,70:-617.37,-55.7599,0,-611.985,-53.0222,-614.32	1/2:209:0,112,97:0:0:112,97:3974,3390:-597.61,-273.83,-240.115,-324.13,0,-294.93	1/2:251:0,117,134:0:0:117,134:4108,4711:-716.766,-382.465,-347.244,-334.652,0,-294.314	1/1:140:0,139,0:0:0:139,0:4957,0:-445.977,-41.8432,0,-445.977,-41.8432,-445.977	1/2:155:0,69,86:0:0:69,86:2463,3007:-445.009,-244.214,-223.443,-201.148,0,-175.26	1/1:212:0,211,0:0:0:211,0:7462,0:-671.236,-63.5173,0,-671.236,-63.5173,-671.236	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:197:0,97,98:0:0:97,98:3419,3445:-557.608,-279.307,-250.107,-278.294,0,-248.793	1/1:62:0,61,0:0:0:61,0:2171,0:-195.287,-18.3628,0,-195.287,-18.3628,-195.287	1/1:12:0,12,0:0:0:12,0:414,0:-37.5863,-3.61236,0,-37.5863,-3.61236,-37.5863	1/1:110:0,107,0:0:0:107,0:3793,0:-341.178,-32.2102,0,-341.178,-32.2102,-341.178	1/1:113:0,112,1:0:0:112,1:3952,36:-355.492,-33.7154,0,-352.56,-30.425,-352.259	1/1: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chr01	2065925	.	A	G	46994	PASS	AB=0.518934;ABP=17.154;AC=41;AF=0.22043;AN=186;AO=2368;CIGAR=1X;DP=9550;DPB=9550;DPRA=1.29525;EPP=5067.18;EPPR=15479.3;GTI=3;LEN=1;MEANALT=1.06818;MQM=60;MQMR=59.9967;NS=93;NUMALT=1;ODDS=0.467266;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84391;QR=257129;RO=7175;RPL=2124;RPP=3244.08;RPPR=6561.02;RPR=244;RUN=1;SAF=2133;SAP=3306.44;SAR=235;SRF=5925;SRP=6617.49;SRR=1250;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:182:76,102:76:2720:102:3628:-272.78,0,-191.1	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:128:126,2:126:4508:2:72:0,-31.6951,-399.052	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:122:122,0:122:4352:0:0:0,-36.7257,-391.854	0/0:117:117,0:117:4166:0:0:0,-35.2205,-375.121	0/1:133:68,65:68:2406:65:2324:-169.383,0,-176.757	0/0:127:127,0:127:4564:0:0:0,-38.2308,-410.924	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/1:97:52,45:52:1868:45:1593:-114.458,0,-139.199	0/1:95:48,47:48:1724:47:1684:-123.249,0,-126.848	0/1:64:41,23:41:1467:23:805:-53.5016,0,-113.059	0/1:66:35,31:35:1256:31:1110:-80.3429,0,-93.4773	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:50:21,29:21:748:29:1033:-78.2309,0,-52.5938	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:139:139,0:139:4981:0:0:0,-41.8432,-448.431	0/1:150:65,85:65:2332:85:3029:-227.685,0,-164.985	0/1:153:44,109:44:1580:109:3876:-302.979,0,-96.434	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:145:75,70:75:2692:70:2500:-181.604,0,-198.875	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.512	0/0:431:431,0:431:15444:0:0:0,-129.744,-1389.67	0/1:155:87,68:87:3120:68:2440:-173.195,0,-234.367	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:355:354,1:354:12700:1:36:0,-103.267,-1139.22	0/0:206:206,0:206:7384:0:0:0,-62.0122,-664.606	0/1:138:72,66:72:2580:66:2355:-170.666,0,-190.907	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/1:9:6,3:6:212:3:99:-6.52731,0,-16.7155	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:429:233,196:233:8368:196:6994:-500.383,0,-623.98	0/1:80:28,52:28:1004:52:1855:-143.147,0,-66.5935	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:157:84,73:84:3005:73:2616:-188.426,0,-223.418	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.586	0/1:84:48,36:48:1724:36:1268:-89.1334,0,-130.159	0/0:233:232,0:232:8293:0:0:0,-69.839,-746.018	0/1:90:38,52:38:1368:52:1844:-139.145,0,-96.3281	0/1:101:41,60:41:1461:60:2147:-163.094,0,-101.38	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/1:56:11,45:11:396:45:1620:-129.232,0,-19.1251	0/0:339:339,0:339:12121:0:0:0,-102.049,-1090.68	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:166:78,88:78:2785:88:3119:-230.965,0,-200.918	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:171:171,0:171:6112:0:0:0,-51.4761,-550.182	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/1:141:76,65:76:2728:65:2332:-167.694,0,-203.317	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:205:205,0:205:7333:0:0:0,-61.7111,-660.018	0/1:138:45,92:45:1620:92:3241:-250.311,0,-104.489	0/0:67:63,4:63:2260:4:144:0,-6.85539,-190.349	0/0:40:39,1:39:1400:1:36:0,-8.44292,-122.701	0/1:118:70,48:70:2512:48:1724:-119.924,0,-190.81	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:81:81,0:81:2903:0:0:0,-24.3834,-261.505	0/1:236:116,120:116:4164:120:4270:-313.438,0,-303.898	0/1:24:10,14:10:356:14:504:-38.4734,0,-25.1565	0/1:95:54,41:54:1932:41:1460:-103.098,0,-145.559	0/1:115:52,63:52:1868:63:2235:-166.795,0,-133.781	0/0:159:159,0:159:5692:0:0:0,-47.8638,-512.398	0/1:133:49,84:49:1764:84:3012:-231.274,0,-119.007	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:41:17,24:17:612:24:856:-65.0189,0,-43.0712	0/1:211:97,113:97:3465:113:4047:-300.988,0,-248.633	0/1:121:67,54:67:2403:54:1932:-137.732,0,-180.101	0/1:58:27,31:27:968:31:1081:-80.1366,0,-69.9776	0/1:111:52,59:52:1864:59:2071:-153.242,0,-134.625	0/1:160:84,76:84:3016:76:2714:-196.338,0,-223.506	0/1:60:28,32:28:1008:32:1144:-85.2077,0,-72.9746	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:93:52,41:52:1857:41:1457:-103.428,0,-139.412	0/1:82:29,53:29:1040:53:1908:-147.313,0,-69.2299	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:122:122,0:122:4388:0:0:0,-36.7257,-395.091
chr01	2073255	.	A	G	46164.8	PASS	AB=0.567984;ABP=187.838;AC=40;AF=0.212766;AN=188;AO=2625;CIGAR=1X;DP=8995;DPB=8995;DPRA=1.6914;EPP=5616.6;EPPR=13631.9;GTI=6;LEN=1;MEANALT=1.04348;MQM=59.984;MQMR=59.992;NS=94;NUMALT=1;ODDS=0.372131;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93729;QR=227657;RO=6368;RPL=10;RPP=5616.6;RPPR=13623.3;RPR=2615;RUN=1;SAF=2625;SAP=5703.13;SAR=0;SRF=6367;SRP=13822.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:72:32,40:32:1148:40:1427:-107.052,0,-81.9557	0/0:127:127,0:127:4536:0:0:0,-38.2308,-408.405	0/0:220:220,0:220:7873:0:0:0,-66.2266,-708.595	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.269	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/1:96:44,52:44:1560:52:1871:-139.77,0,-111.793	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:109:51,58:51:1828:58:2073:-154.026,0,-131.989	0/1:62:31,31:31:1100:31:1107:-81.2763,0,-80.6464	0/1:53:26,27:26:928:27:942:-69.1352,0,-67.8837	0/1:85:52,33:52:1864:33:1184:-81.2808,0,-142.452	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.35	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:155:155,0:155:5540:0:0:0,-46.6596,-498.726	0/1:168:62,106:62:2212:106:3778:-289.646,0,-148.772	0/1:175:46,129:46:1652:129:4620:-363.283,0,-96.2882	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.39	0/1:93:33,60:33:1176:60:2151:-165.861,0,-78.152	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:191:188,2:188:6733:2:72:0,-50.6589,-598.865	0/1:329:143,186:143:5053:186:6646:-499.178,0,-355.88	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:300:299,1:299:10686:1:36:0,-86.7107,-958.049	0/0:116:116,0:116:4152:0:0:0,-34.9195,-373.863	0/1:135:57,78:57:2044:78:2784:-210.159,0,-143.593	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:223:111,112:111:3969:112:4008:-293.779,0,-290.27	0/1:245:108,137:108:3856:137:4872:-364.69,0,-273.484	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:175:70,105:70:2493:105:3751:-285.11,0,-171.941	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:64:39,25:39:1400:25:896:-61.6944,0,-107.033	0/0:106:106,0:106:3774:0:0:0,-31.9092,-339.857	0/1:130:35,95:35:1260:95:3368:-264.202,0,-74.5716	0/1:189:59,130:59:2112:130:4639:-360.777,0,-133.454	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:163:91,72:91:3260:72:2584:-183.741,0,-244.553	0/0:241:241,0:241:8508:0:0:0,-72.5482,-765.722	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:164:56,108:56:2008:108:3867:-298.855,0,-131.624	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7167	0/0:138:138,0:138:4948:0:0:0,-41.5421,-445.469	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:84:83,1:83:2968:1:36:0,-21.6882,-263.755	0/1:103:53,50:53:1908:50:1787:-130.106,0,-140.991	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:196:196,0:196:7012:0:0:0,-59.0019,-631.144	0/1:170:80,89:80:2872:89:3170:-234.29,0,-207.483	0/0:46:45,1:45:1608:1:36:0,-10.2491,-141.412	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/1:192:74,118:74:2641:118:4219:-322.092,0,-180.137	0/0:208:204,4:204:7282:4:140:0,-49.6706,-642.487	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:108:108,0:108:3830:0:0:0,-32.5112,-344.896	0/1:53:19,34:19:684:34:1216:-93.792,0,-45.9357	0/1:23:8,15:8:288:15:540:-42.0128,0,-19.3437	0/1:171:71,100:71:2517:100:3580:-270.931,0,-175.291	0/1:84:38,46:38:1368:46:1634:-122.061,0,-98.1343	0/0:120:120,0:120:4292:0:0:0,-36.1236,-386.458	0/1:186:90,96:90:3209:96:3430:-252.92,0,-233.04	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:111:38,73:38:1364:73:2620:-202.633,0,-89.6464	0/1:196:84,112:84:3004:112:3999:-301.098,0,-211.59	0/1:54:34,20:34:1224:20:720:-48.8732,0,-94.2114	0/1:81:39,42:39:1400:42:1504:-111.271,0,-101.916	0/1:53:25,28:25:883:28:1004:-74.7213,0,-63.8329	0/1:132:64,68:64:2296:68:2424:-178.679,0,-167.165	0/1:21:4,17:4:144:17:612:-49.0918,0,-6.99199	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:130:129,1:129:4597:1:36:0,-35.5356,-410.297	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:119:62,57:62:2213:57:2010:-145.347,0,-163.61	0/1:76:30,46:30:1080:46:1616:-122.848,0,-74.635	0/0:150:150,0:150:5356:0:0:0,-45.1545,-482.174	0/0:103:103,0:103:3708:0:0:0,-31.0061,-333.92
chr01	2073266	.	C	G	131141	PASS	AB=0.436128;ABP=164.452;AC=148;AF=0.787234;AN=188;AO=6330;CIGAR=1X;DP=8920;DPB=8920;DPRA=0;EPP=13731.1;EPPR=5601.07;GTI=6;LEN=1;MEANALT=1.11702;MQM=59.9902;MQMR=59.9701;NS=94;NUMALT=1;ODDS=0.485742;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225577;QR=91677;RO=2578;RPL=6328;RPP=13731.1;RPPR=5601.07;RPR=2;RUN=1;SAF=6330;SAP=13748.4;SAR=0;SRF=2578;SRP=5601.07;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:74:41,33:41:1455:33:1180:-84.2318,0,-107.948	1/1:128:0,127:0:0:127:4523:-406.877,-38.2308,0	1/1:221:0,221:0:0:221:7862:-707.611,-66.5276,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:33:0,33:0:0:33:1179:-106.418,-9.93399,0	1/1:108:0,108:0:0:108:3823:-344.264,-32.5112,0	1/1:100:0,100:0:0:100:3562:-320.788,-30.103,0	0/1:99:54,45:54:1931:45:1571:-111.85,0,-144.264	1/1:74:0,74:0:0:74:2621:-236.135,-22.2762,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:107:56,51:56:2004:51:1804:-130.43,0,-148.423	0/1:60:31,29:31:1108:29:1022:-74.2297,0,-81.9692	0/1:52:27,25:27:968:25:879:-63.7732,0,-71.7838	0/1:84:33,51:33:1127:51:1819:-138.704,0,-76.4416	1/1:84:0,84:0:0:84:2953:-266,-25.2865,0	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	0/1:28:14,14:14:500:14:488:-35.8216,0,-36.9073	1/1:34:0,34:0:0:34:1194:-107.763,-10.235,0	1/1:154:0,153:0:0:153:5468:-491.886,-46.0576,0	0/1:165:103,62:103:3674:62:2220:-150.394,0,-281.193	0/1:176:128,48:128:4571:48:1719:-102.014,0,-358.575	1/1:107:0,106:0:0:106:3799:-341.747,-31.9092,0	0/1:93:57,36:57:2027:36:1258:-85.5237,0,-154.706	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:190:2,187:2:72:187:6689:-594.879,-50.4178,0	0/1:328:177,150:177:6277:150:5299:-378.249,0,-466.23	1/1:41:0,41:0:0:41:1433:-129.261,-12.3422,0	1/1:303:1,302:1:36:302:10814:-969.562,-87.6138,0	1/1:113:0,113:0:0:113:4011:-361.182,-34.0164,0	0/1:136:77,59:77:2741:59:2094:-147.789,0,-205.991	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:9:2,7:2:72:7:244:-19.5902,0,-4.12745	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	0/1:217:110,107:110:3918:107:3806:-277.415,0,-287.49	0/1:243:134,109:134:4765:109:3876:-275.884,0,-354.92	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:175:102,73:102:3638:73:2618:-183.187,0,-274.944	1/1:23:0,22:0:0:22:788:-70.885,-6.62266,0	1/1:87:0,87:0:0:87:3087:-278.057,-26.1896,0	1/1:57:0,57:0:0:57:2039:-183.781,-17.1587,0	0/1:62:25,37:25:888:37:1313:-99.8058,0,-61.5752	1/1:107:0,107:0:0:107:3825:-344.447,-32.2102,0	0/1:121:86,35:86:3072:35:1256:-76.9207,0,-240.284	0/1:189:129,60:129:4601:60:2150:-136.873,0,-357.357	1/1:91:0,90:0:0:90:3188:-286.782,-27.0927,0	0/1:161:70,91:70:2512:91:3252:-244.436,0,-177.866	1/1:242:0,242:0:0:242:8621:-775.883,-72.8493,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:166:106,58:106:3789:58:2061:-136.031,0,-291.478	1/1:52:1,51:1:36:51:1811:-159.672,-12.0553,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:135:0,135:0:0:135:4800:-432.157,-40.6391,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:82:1,81:1:36:81:2904:-257.997,-21.0862,0	0/1:103:50,52:50:1723:52:1863:-136.884,0,-124.284	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:200:0,200:0:0:200:7145:-643.104,-60.206,0	0/1:170:90,80:90:3218:80:2865:-206.911,0,-238.666	1/1:44:2,42:2:72:42:1503:-128.727,-6.4086,0	1/1:72:0,72:0:0:72:2556:-230.29,-21.6742,0	0/1:189:118,71:118:4168:71:2537:-171.686,0,-318.408	1/1:203:4,199:4:140:199:7103:-626.384,-48.1655,0	1/1:42:0,42:0:0:42:1464:-132.051,-12.6433,0	1/1:114:0,113:0:0:113:4006:-360.371,-34.0164,0	0/1:52:33,19:33:1169:19:684:-46.2368,0,-89.8617	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3501	0/1:172:101,71:101:3583:71:2527:-175.902,0,-270.9	0/1:84:45,39:45:1616:39:1404:-101.373,0,-120.443	1/1:119:1,118:1:36:118:4186:-373.324,-32.2243,0	0/1:179:92,87:92:3278:87:3128:-227.861,0,-241.355	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:111:72,39:72:2572:39:1385:-91.5325,0,-198.316	0/1:192:110,82:110:3901:82:2928:-205.955,0,-293.487	0/1:56:22,34:22:768:34:1207:-92.0776,0,-52.58	0/1:78:40,38:40:1400:38:1360:-99.2203,0,-102.814	0/1:49:27,22:27:959:22:792:-56.8552,0,-71.8749	0/1:127:65,62:65:2324:62:2203:-160.304,0,-171.189	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	1/1:122:1,121:1:36:121:4318:-385.199,-33.1274,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:118:58,60:58:2075:60:2144:-157.706,0,-151.498	0/1:74:44,30:44:1529:30:1047:-72.2619,0,-115.621	1/1:145:0,144:0:0:144:5143:-462.652,-43.3483,0	1/1:102:0,102:0:0:102:3634:-327.265,-30.7051,0
chr01	2073352	.	G	A	25667.7	PASS	AB=0.592631;ABP=363.061;AC=41;AF=0.218085;AN=188;AO=2883;CIGAR=1X;DP=8803;DPB=8803;DPRA=1.75253;EPP=6202.71;EPPR=12823.4;GTI=10;LEN=1;MEANALT=1.04167;MQM=26.5602;MQMR=35.9675;NS=94;NUMALT=1;ODDS=0.207801;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103051;QR=211390;RO=5916;RPL=7;RPP=6202.71;RPPR=12823.4;RPR=2876;RUN=1;SAF=0;SAP=6263.37;SAR=2883;SRF=0;SRP=12849.4;SRR=5916;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:608:0:0:0,-5.11751,-48.6433	0/1:239:131,108:131:4692:108:3884:-185.702,0,-309.807	0/0:68:67,0:67:2404:0:0:0,-20.169,-197.865	0/0:60:60,0:60:2152:0:0:0,-18.0618,-176.133	0/0:34:33,1:33:1180:1:36:0,-6.93599,-93.1944	0/0:109:109,0:109:3875:0:0:0,-32.8123,-317.809	0/0:123:123,0:123:4405:0:0:0,-37.0267,-366.339	0/0:105:101,4:101:3596:4:144:0,-21.8083,-284.134	0/1:135:44,91:44:1567:91:3238:-173.864,0,-88.0727	0/0:111:111,0:111:3968:0:0:0,-33.4143,-327.934	0/0:60:60,0:60:2152:0:0:0,-18.0618,-175.215	0/1:73:37,35:37:1298:35:1247:-61.4706,0,-85.3959	0/1:60:29,31:29:1028:31:1116:-55.765,0,-66.8036	0/1:56:26,30:26:936:30:1072:-55.2261,0,-58.6981	0/1:64:31,33:31:1112:33:1188:-56.2114,0,-73.3923	0/0:36:36,0:36:1292:0:0:0,-10.8371,-107.267	0/0:62:62,0:62:2192:0:0:0,-18.6639,-180.758	0/1:59:27,32:27:968:32:1152:-58.3634,0,-61.7021	0/0:31:31,0:31:1112:0:0:0,-9.33193,-91.4854	0/0:135:135,0:135:4844:0:0:0,-40.639,-400.76	0/1:82:38,44:38:1364:44:1576:-80.3428,0,-86.7284	0/1:178:26,152:26:932:152:5441:-295.48,0,-22.2476	0/0:50:48,2:48:1728:2:72:0,-10.19,-139.063	0/1:148:48,100:48:1720:100:3588:-193.912,0,-92.6854	0/0:51:51,0:51:1832:0:0:0,-15.3525,-149.908	0/0:317:317,0:317:11345:0:0:0,-95.4265,-943.408	0/1:196:95,101:95:3381:101:3613:-180.304,0,-211.895	0/0:30:30,0:30:1080:0:0:0,-9.0309,-89.6739	0/0:224:223,0:223:7970:0:0:0,-67.1297,-658.155	0/0:241:239,2:239:8550:2:72:0,-67.5159,-690.896	0/1:162:74,88:74:2656:88:3145:-153.025,0,-172.055	0/0:24:24,0:24:860:0:0:0,-7.22472,-69.7569	0/0:8:8,0:8:284:0:0:0,-2.40824,-23.9913	0/1:4:3,1:3:108:1:36:-1.44448,0,-8.03315	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.29902	0/0:7:7,0:7:252:0:0:0,-2.10721,-21.1138	0/1:219:94,125:94:3371:125:4464:-220.472,0,-215.54	0/1:293:97,196:97:3480:196:7004:-380.665,0,-194.281	0/0:44:44,0:44:1575:0:0:0,-13.2453,-129.089	0/1:2:1,1:1:36:1:36:-2.04654,0,-2.69696	0/1:145:73,72:73:2615:72:2584:-128.384,0,-169.212	0/0:28:28,0:28:995:0:0:0,-8.42884,-82.1376	0/0:68:68,0:68:2424:0:0:0,-20.47,-200.551	0/0:78:78,0:78:2760:0:0:0,-23.4803,-230.18	0/1:58:27,31:27:968:31:1112:-54.3772,0,-62.2519	0/0:72:72,0:72:2584:0:0:0,-21.6742,-216.055	0/1:181:45,136:45:1601:136:4844:-265.849,0,-76.6591	0/1:196:52,144:52:1856:144:5119:-270.444,0,-95.5998	0/0:80:80,0:80:2835:0:0:0,-24.0824,-232.434	0/1:138:56,82:56:1980:82:2948:-148.886,0,-122.828	0/0:134:134,0:134:4795:0:0:0,-40.338,-398.168	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.36921	0/1:117:42,75:42:1512:75:2692:-144.559,0,-89.0616	0/0:40:40,0:40:1436:0:0:0,-12.0412,-114.277	0/0:15:15,0:15:540:0:0:0,-4.51545,-44.9095	0/0:78:78,0:78:2760:0:0:0,-23.4803,-227.439	0/0:29:29,0:29:1027:0:0:0,-8.72987,-85.5214	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.2341	0/0:20:20,0:20:701:0:0:0,-6.0206,-58.3894	0/0:83:81,2:81:2878:2:72:0,-19.051,-228.071	0/1:130:52,78:52:1872:78:2804:-141.317,0,-116.965	1/1:1:0,1:0:0:1:36:-2.55871,-0.30103,0	0/0:173:173,0:173:6183:0:0:0,-52.0782,-514.076	0/1:251:103,148:103:3687:148:5261:-263.726,0,-230.936	0/0:90:84,6:84:3011:6:216:0,-12.5254,-227.558	0/0:40:40,0:40:1428:0:0:0,-12.0412,-119.175	0/1:187:48,139:48:1712:139:4967:-264.184,0,-85.3625	0/0:70:70,0:70:2472:0:0:0,-21.0721,-207.071	0/0:23:23,0:23:820:0:0:0,-6.92369,-67.3405	0/0:86:86,0:86:3079:0:0:0,-25.8886,-253.073	0/1:99:56,43:56:1994:43:1544:-69.5066,0,-135.679	0/1:19:6,13:6:212:13:468:-24.5548,0,-11.8364	0/1:153:74,78:74:2644:78:2709:-137.355,0,-170.464	0/1:88:30,58:30:1072:58:2079:-111.387,0,-60.852	0/0:126:126,0:126:4500:0:0:0,-37.9298,-367.092	0/1:227:91,136:91:3241:136:4850:-244.903,0,-201.131	0/0:93:93,0:93:3344:0:0:0,-27.9958,-272.227	0/0:132:131,1:131:4655:1:36:0,-37.0874,-377.666	0/0:9:9,0:9:324:0:0:0,-2.70927,-27.052	0/0:124:123,1:123:4372:1:36:0,-34.0287,-352.675	0/1:92:24,68:24:864:68:2410:-133.149,0,-43.0836	0/1:184:73,111:73:2613:111:3996:-200.614,0,-161.979	0/1:126:76,50:76:2720:50:1792:-77.9806,0,-188.126	0/1:40:21,19:21:756:19:680:-31.918,0,-50.9837	0/1:70:33,37:33:1184:37:1332:-64.9986,0,-76.8518	0/1:158:96,62:96:3427:62:2220:-96.8377,0,-237.034	0/1:38:16,22:16:572:22:788:-40.6984,0,-36.2179	0/0:94:94,0:94:3343:0:0:0,-28.2968,-276.4	0/0:43:43,0:43:1544:0:0:0,-12.9443,-127.018	0/0:26:26,0:26:928:0:0:0,-7.82678,-76.436	0/1:82:42,40:42:1493:40:1432:-70.8078,0,-98.0364	0/1:82:29,53:29:1044:53:1900:-99.4913,0,-62.1902	0/0:58:58,0:58:2084:0:0:0,-17.4597,-173.89	0/0:104:104,0:104:3736:0:0:0,-31.3071,-307.117
chr01	2073363	.	T	A	104269	PASS	AB=0.403192;ABP=395.692;AC=147;AF=0.781915;AN=188;AO=5858;CIGAR=1X;DP=8759;DPB=8759;DPRA=94.172;EPP=12654.1;EPPR=6004.08;GTI=9;LEN=1;MEANALT=1.03226;MQM=35.9742;MQMR=26.569;NS=94;NUMALT=1;ODDS=0.884789;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209890;QR=103948;RO=2898;RPL=8;RPP=12654.1;RPPR=6004.08;RPR=5850;RUN=1;SAF=0;SAP=12723.5;SAR=5858;SRF=0;SRP=6295.94;SRR=2898;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:576:-45.8948,-4.81648,0	0/1:239:108,131:108:3872:131:4708:-311.509,0,-185.519	1/1:69:0,69:0:0:69:2480:-203.521,-20.7711,0	1/1:60:0,60:0:0:60:2156:-176.868,-18.0618,0	1/1:33:1,32:1:36:32:1152:-90.6667,-6.63497,0	1/1:109:0,109:0:0:109:3904:-319.895,-32.8123,0	1/1:119:0,119:0:0:119:4260:-354.926,-35.8226,0	1/1:105:4,101:4:144:101:3593:-285.167,-21.8083,0	0/1:133:90,43:90:3220:43:1544:-87.0844,0,-173.062	1/1:108:0,108:0:0:108:3865:-319.742,-32.5112,0	1/1:63:0,63:0:0:63:2259:-183.869,-18.9649,0	0/1:74:37,37:37:1332:37:1324:-87.0284,0,-65.5919	0/1:60:31,29:31:1116:29:1044:-67.706,0,-55.765	0/1:56:31,25:31:1116:25:891:-56.1816,0,-57.7322	0/1:65:33,32:33:1188:32:1152:-76.3426,0,-55.9104	1/1:36:0,36:0:0:36:1296:-107.488,-10.8371,0	1/1:58:0,58:0:0:58:2088:-171.443,-17.4597,0	0/1:58:32,26:32:1152:26:932:-58.9936,0,-58.6644	1/1:32:0,32:0:0:32:1143:-94.088,-9.63296,0	1/1:135:0,135:0:0:135:4836:-400.282,-40.6391,0	0/1:80:44,35:44:1576:35:1252:-78.1732,0,-80.9174	0/1:177:151,26:151:5424:26:909:-21.7104,0,-294.191	1/1:51:2,49:2:68:49:1744:-140.95,-10.544,0	0/1:149:100,49:100:3588:49:1760:-95.5743,0,-193.017	1/1:52:0,52:0:0:52:1864:-152.556,-15.6536,0	1/1:317:0,316:0:0:316:11308:-939.644,-95.1255,0	0/1:196:101,95:101:3632:95:3416:-214.394,0,-181.374	1/1:30:1,29:1:36:29:1040:-82.6153,-5.43263,0	1/1:222:0,222:0:0:222:7956:-656.286,-66.8287,0	1/1:238:2,236:2:72:236:8438:-682.209,-66.6128,0	0/1:159:88,71:88:3160:71:2552:-164.994,0,-155.161	1/1:24:0,24:0:0:24:864:-70.5506,-7.22472,0	1/1:8:0,8:0:0:8:284:-23.9913,-2.40824,0	0/1:5:2,3:2:72:3:108:-7.73212,0,-3.52719	1/1:1:0,1:0:0:1:36:-3.29902,-0.30103,0	1/1:7:0,7:0:0:7:252:-21.1138,-2.10721,0	0/1:219:126,92:126:4532:92:3304:-209.864,0,-223.128	0/1:295:200,95:200:7130:95:3384:-186.102,0,-388.745	1/1:44:0,44:0:0:44:1580:-129.615,-13.2453,0	0/1:2:1,1:1:32:1:36:-2.69696,0,-1.97882	0/1:144:72,72:72:2580:72:2563:-167.535,0,-128.326	1/1:26:0,26:0:0:26:936:-77.0682,-7.82678,0	1/1:68:0,68:0:0:68:2436:-201.469,-20.47,0	1/1:77:0,77:0:0:77:2747:-228.528,-23.1793,0	0/1:58:31,27:31:1116:27:972:-62.7553,0,-54.4276	1/1:70:0,70:0:0:70:2512:-210.013,-21.0721,0	0/1:182:137,45:137:4916:45:1616:-77.4945,0,-269.36	0/1:197:143,54:143:5109:54:1928:-101.105,0,-267.71	1/1:81:0,81:0:0:81:2900:-237.769,-24.3834,0	0/1:138:83,55:83:2980:55:1976:-122.009,0,-151.13	1/1:135:0,135:0:0:135:4848:-400.693,-40.6391,0	1/1:3:0,3:0:0:3:108:-9.36921,-0.90309,0	0/1:116:75,41:75:2692:41:1472:-86.1729,0,-144.86	1/1:40:0,40:0:0:40:1436:-114.277,-12.0412,0	1/1:15:0,15:0:0:15:540:-44.9095,-4.51545,0	1/1:76:0,76:0:0:76:2727:-224.047,-22.8783,0	1/1:29:0,29:0:0:29:1040:-86.3435,-8.72987,0	1/1:4:0,4:0:0:4:144:-12.2341,-1.20412,0	1/1:20:0,20:0:0:20:716:-59.5293,-6.0206,0	1/1:80:2,78:2:72:78:2777:-220.591,-18.1479,0	0/1:132:80,52:80:2876:52:1868:-116.123,0,-145.767	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.55871	1/1:170:0,170:0:0:170:6089:-506.834,-51.1751,0	0/1:250:146,104:146:5236:104:3727:-234.415,0,-261.451	1/1:87:6,81:6:216:81:2904:-218.943,-11.6223,0	1/1:41:0,41:0:0:41:1468:-122.445,-12.3422,0	0/1:190:141,49:141:5041:49:1755:-87.127,0,-267.499	1/1:71:0,71:0:0:71:2548:-212.792,-21.3731,0	1/1:23:0,23:0:0:23:826:-67.7694,-6.92369,0	1/1:86:0,86:0:0:86:3087:-254.109,-25.8886,0	0/1:94:41,53:41:1472:53:1904:-130.23,0,-66.4061	0/1:19:13,6:13:468:6:216:-11.8783,0,-24.5548	0/1:150:77,73:77:2764:73:2616:-168.965,0,-138.674	0/1:89:59,30:59:2120:30:1080:-60.9927,0,-113.633	1/1:124:0,124:0:0:124:4433:-361.831,-37.3277,0	0/1:226:135,91:135:4852:91:3264:-203.175,0,-243.533	1/1:89:0,89:0:0:89:3187:-259.892,-26.7917,0	1/1:129:1,128:1:36:128:4604:-371.562,-36.1843,0	1/1:8:0,8:0:0:8:288:-24.0829,-2.40824,0	1/1:125:1,124:1:36:124:4440:-357.958,-34.3297,0	0/1:93:69,24:69:2480:24:864:-42.7826,0,-136.092	0/1:184:112,72:112:4016:72:2581:-159.774,0,-202.705	0/1:127:50,77:50:1796:77:2761:-191.3,0,-77.7407	0/1:39:19,20:19:684:20:720:-48.2731,0,-32.2696	0/1:72:40,32:40:1432:32:1152:-73.4778,0,-71.3557	0/1:156:63,93:63:2256:93:3318:-228.723,0,-99.7426	0/1:38:22,16:22:788:16:576:-36.4394,0,-40.6984	1/1:90:0,90:0:0:90:3215:-265.371,-27.0927,0	1/1:42:0,42:0:0:42:1508:-124.029,-12.6433,0	1/1:26:0,26:0:0:26:936:-76.6906,-7.82678,0	0/1:80:40,40:40:1436:40:1424:-93.302,0,-71.4709	0/1:83:54,29:54:1944:29:1044:-61.8892,0,-101.615	1/1:58:0,58:0:0:58:2072:-172.535,-17.4597,0	1/1:104:0,104:0:0:104:3731:-306.98,-31.3071,0
chr01	2073458	.	GTTGCAAT	ATTACAAG,GTTACAAT	180351	PASS	AB=0.48552,0.505232;ABP=10.4939,3.98744;AC=148,40;AF=0.787234,0.212766;AN=188;AO=6266,2082;CIGAR=1X2M1X3M1X,3M1X4M;DP=8417;DPB=8425.62;DPRA=30.1577,1.34841;EPP=13144.5,4334.95;EPPR=3.73412;GTI=4;LEN=8,1;MEANALT=2.10753,2.83333;MQM=58.4331,59.989;MQMR=60;NS=94;NUMALT=2;ODDS=0.318929;PAIRED=0,0;PAIREDR=0;PAO=70,0;PQA=2336,0;PQR=0;PRO=0;QA=220420,74491;QR=91;RO=3;RPL=54,22;RPP=13144.5,4334.95;RPPR=3.73412;RPR=6212,2060;RUN=1,1;SAF=6266,2082;SAP=13609.5,4524.02;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47,0:0:0:47,0:1642,0:-147.446,-14.1484,0,-147.446,-14.1484,-147.446	1/2:57:0,25,32:0:0:25,32:876,1140:-164.534,-93.2762,-85.7505,-71.6101,0,-61.9771	1/1:125:0,125,0:0:0:125,0:4404,0:-395.594,-37.6288,0,-395.594,-37.6288,-395.594	1/1:165:0,161,1:0:0:161,1:5675,36:-510.262,-48.4658,0,-507.324,-45.526,-507.023	1/1:23:0,22,0:0:0:22,0:779,0:-70.1257,-6.62266,0,-70.1257,-6.62266,-70.1257	1/1:13:0,13,0:0:0:13,0:450,0:-40.75,-3.91339,0,-40.75,-3.91339,-40.75	1/1:54:0,54,0:0:0:54,0:1914,0:-172.193,-16.2556,0,-172.193,-16.2556,-172.193	1/1:161:0,159,0:0:0:159,0:5583,0:-501.508,-47.8638,0,-501.508,-47.8638,-501.508	1/2:93:0,46,45:0:0:46,45:1645,1612:-265.364,-131.48,-117.632,-133.897,0,-120.351	1/1:103:0,103,0:0:0:103,0:3591,0:-322.389,-31.0061,0,-322.389,-31.0061,-322.389	1/1:117:0,116,0:0:0:116,0:4113,0:-369.429,-34.9195,0,-369.429,-34.9195,-369.429	1/2:126:0,62,64:0:0:62,64:2174,2300:-364.153,-187.995,-169.331,-176.512,0,-157.246	1/2:71:0,35,36:0:0:35,36:1228,1296:-205.431,-106.104,-95.5675,-99.6818,0,-88.8447	1/2:108:0,46,61:0:0:46,61:1631,2183:-310.759,-178.121,-164.273,-132.74,0,-114.378	1/2:71:0,32,38:0:0:32,38:1134,1360:-203.225,-110.902,-101.269,-92.3196,0,-80.8804	1/1:76:0,76,0:0:0:76,0:2688,0:-241.005,-22.8783,0,-241.005,-22.8783,-241.005	1/1:43:0,43,0:0:0:43,0:1514,0:-136.377,-12.9443,0,-136.377,-12.9443,-136.377	1/2:32:0,21,11:0:0:21,11:741,392:-92.6245,-32.3087,-25.9871,-60.6707,0,-57.3594	1/1:63:0,63,0:0:0:63,0:2245,0:-202.148,-18.9649,0,-202.148,-18.9649,-202.148	1/1:145:0,143,0:0:0:143,0:5018,0:-451.252,-43.0473,0,-451.252,-43.0473,-451.252	1/2:182:0,88,91:0:0:88,91:3116,3268:-519.157,-266.604,-240.113,-252.567,0,-225.173	1/2:67:0,33,34:0:0:33,34:1155,1220:-193.699,-99.8718,-89.9378,-94.1811,0,-83.9461	1/1:93:0,93,0:0:0:93,0:3277,0:-294.361,-27.9958,0,-294.361,-27.9958,-294.361	1/2:82:0,35,46:0:0:35,46:1234,1656:-235.123,-135.124,-124.588,-99.997,0,-86.1496	1/1:63:0,62,0:0:0:62,0:2120,0:-190.815,-18.6639,0,-190.815,-18.6639,-190.815	1/1:204:0,204,0:0:0:204,0:7177,0:-645.53,-61.4101,0,-645.53,-61.4101,-645.53	1/2:317:0,176,137:0:0:176,137:6169,4886:-899.835,-398.318,-345.337,-501.539,0,-460.298	1/1:39:0,39,0:0:0:39,0:1368,0:-123.418,-11.7402,0,-123.418,-11.7402,-123.418	1/1:240:0,240,0:0:0:240,0:8473,0:-761.56,-72.2472,0,-761.56,-72.2472,-761.56	1/1:92:0,92,0:0:0:92,0:3217,0:-289.627,-27.6948,0,-289.627,-27.6948,-289.627	1/2:69:0,24,45:0:0:24,45:857,1608:-201.297,-131.464,-124.239,-70.1906,0,-56.6443	1/1:6:0,6,0:0:0:6,0:213,0:-19.5164,-1.80618,0,-19.5164,-1.80618,-19.5164	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:14:0,13,1:0:0:13,1:458,36:-41.1835,-3.91339,0,-38.2455,-0.616145,-37.9445	1/1:1:0,1,0:0:0:1,0:36,0:-3.59727,-0.30103,0,-3.59727,-0.30103,-3.59727	1/1:17:0,17,0:0:0:17,0:602,0:-54.4649,-5.11751,0,-54.4649,-5.11751,-54.4649	1/2:208:0,122,84:0:0:122,84:4327,3024:-599.061,-246.744,-210.018,-352.316,0,-327.029	1/2:113:0,57,56:0:0:57,56:2004,1974:-323.466,-161.074,-143.915,-162.744,0,-145.886	1/1:73:0,72,0:0:0:72,0:2522,0:-226.459,-21.6742,0,-226.459,-21.6742,-226.459	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/2:121:0,53,66:0:0:53,66:1851,2341:-341.223,-190.776,-174.822,-150.494,0,-130.626	1/1:53:0,53,0:0:0:53,0:1894,0:-170.692,-15.9546,0,-170.692,-15.9546,-170.692	1/1:95:0,95,0:0:0:95,0:3341,0:-300.768,-28.5979,0,-300.768,-28.5979,-300.768	1/1:73:0,73,0:0:0:73,0:2560,0:-230.235,-21.9752,0,-230.235,-21.9752,-230.235	1/2:50:1,17,31:1:27:17,31:593,1116:-136.908,-89.0096,-86.0183,-46.1372,0,-38.9305	1/1:95:0,95,0:0:0:95,0:3350,0:-300.755,-28.5979,0,-300.755,-28.5979,-300.755	1/2:108:0,58,50:0:0:58,50:2026,1800:-311.794,-147.231,-129.771,-164.918,0,-149.866	1/2:121:0,59,61:0:0:59,61:2081,2142:-343.447,-174.384,-156.623,-169.116,0,-150.753	1/1:92:0,90,0:0:0:90,0:3151,0:-282.721,-27.0927,0,-282.721,-27.0927,-282.721	1/2:170:0,69,100:0:0:69,100:2429,3565:-488.119,-290.594,-269.823,-197.518,0,-167.415	1/1:96:0,95,0:0:0:95,0:3319,0:-298.535,-28.5979,0,-298.535,-28.5979,-298.535	1/1:8:0,8,0:0:0:8,0:284,0:-25.8748,-2.40824,0,-25.8748,-2.40824,-25.8748	1/2:194:0,77,117:0:0:77,117:2703,4176:-560.716,-340.8,-317.621,-220.268,0,-185.048	1/1:36:0,36,0:0:0:36,0:1249,0:-112.665,-10.8371,0,-112.665,-10.8371,-112.665	1/1:13:0,12,0:0:0:12,0:410,0:-36.8184,-3.61236,0,-36.8184,-3.61236,-36.8184	1/1:156:0,155,0:0:0:155,0:5432,0:-488.379,-46.6597,0,-488.379,-46.6597,-488.379	1/1:36:0,35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chr01	2073482	.	C	G	368666	PASS	AB=0.476359;ABP=45.6196;AC=146;AF=0.776596;AN=188;AO=13758;CIGAR=1X;DP=18381;DPB=18381;DPRA=49.4005;EPP=29869.4;EPPR=10011.3;GTI=4;LEN=1;MEANALT=1.11828;MQM=59.291;MQMR=59.9516;NS=94;NUMALT=1;ODDS=0.218472;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=487550;QR=163794;RO=4609;RPL=6065;RPP=421.33;RPPR=87.3104;RPR=7693;RUN=1;SAF=6066;SAP=420.302;SAR=7692;SRF=2093;SRP=87.3104;SRR=2516;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:95:0,95:0:0:95:3334:-299.564,-28.5979,0	0/1:249:134,115:134:4764:115:4102:-294.366,0,-353.962	1/1:250:0,250:0:0:250:8913:-801.077,-75.2575,0	1/1:421:1,419:1:36:419:14850:-1332.37,-123.194,0	1/1:54:0,54:0:0:54:1887:-169.948,-16.2556,0	1/1:59:0,59:0:0:59:2105:-189.603,-17.7608,0	1/1:195:1,194:1:36:194:6785:-607.075,-55.1026,0	1/1:275:2,273:2:72:273:9658:-860.88,-75.9465,0	0/1:250:130,120:130:4630:120:4278:-309.543,0,-341.37	1/1:234:0,234:0:0:234:8320:-748.072,-70.441,0	1/1:171:0,171:0:0:171:6082:-546.765,-51.4761,0	0/1:204:109,95:109:3878:95:3390:-243.585,0,-287.803	0/1:119:58,61:58:2063:61:2163:-158.139,0,-150.115	0/1:167:96,71:96:3371:71:2540:-178.532,0,-253.336	0/1:143:76,67:76:2692:67:2380:-171.37,0,-199.476	1/1:120:0,120:0:0:120:4232:-380.719,-36.1236,0	1/1:114:1,113:1:36:113:3983:-354.928,-30.7191,0	0/1:99:53,46:53:1875:46:1639:-117.975,0,-139.21	1/1:103:0,103:0:0:103:3650:-328.446,-31.0061,0	1/1:854:1,853:1:36:853:30240:-2716.94,-253.481,0	0/1:352:192,159:192:6804:159:5608:-397.562,0,-506.454	0/1:159:103,56:103:3669:56:1977:-130.157,0,-282.549	1/1:178:0,178:0:0:178:6324:-568.763,-53.5833,0	0/1:254:128,126:128:4562:126:4449:-323.561,0,-334.283	1/1:111:0,111:0:0:111:3928:-353.666,-33.4143,0	1/1:535:0,535:0:0:535:18941:-1703.92,-161.051,0	0/1:535:220,313:220:7829:313:11098:-837.575,0,-543.814	1/1:70:0,70:0:0:70:2488:-224.174,-21.0721,0	1/1:541:0,541:0:0:541:19150:-1722.67,-162.857,0	1/1:246:1,244:1:36:244:8562:-766.728,-70.5139,0	0/1:197:120,77:120:4291:77:2731:-186.683,0,-327.036	1/1:12:0,12:0:0:12:423:-38.4046,-3.61236,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:22:4,18:4:144:18:644:-51.6566,0,-6.69096	0/1:3:1,2:1:36:2:72:-5.93268,0,-2.69518	1/1:20:0,20:0:0:20:709:-64.0734,-6.0206,0	0/1:389:185,204:185:6578:204:7219:-532.402,0,-474.986	0/1:235:118,117:118:4228:117:4159:-302.768,0,-309.958	1/1:125:0,125:0:0:125:4420:-397.585,-37.6288,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:500:256,244:256:9097:244:8646:-626.771,0,-668.172	1/1:88:0,88:0:0:88:3109:-279.991,-26.4906,0	1/1:216:0,216:0:0:216:7628:-686.134,-65.0225,0	1/1:158:0,158:0:0:158:5588:-503.022,-47.5627,0	0/1:103:57,46:57:2044:46:1632:-116.134,0,-153.226	1/1:192:0,189:0:0:189:6682:-600.694,-56.8947,0	0/1:187:91,96:91:3253:96:3388:-248.421,0,-236.697	0/1:201:106,95:106:3737:95:3352:-240.793,0,-276.021	1/1:236:0,236:0:0:236:8401:-755.835,-71.0431,0	0/1:344:186,158:186:6628:158:5635:-403.318,0,-493.046	1/1:277:1,276:1:36:276:9791:-877.485,-79.787,0	1/1:11:0,11:0:0:11:396:-35.9541,-3.31133,0	0/1:373:212,161:212:7536:161:5718:-402.368,0,-565.812	1/1:53:0,52:0:0:52:1844:-165.801,-15.6536,0	1/1:31:0,31:0:0:31:1072:-96.6314,-9.33193,0	1/1:250:0,250:0:0:250:8903:-800.872,-75.2575,0	1/1:108:0,108:0:0:108:3847:-345.115,-32.5112,0	1/1:7:0,7:0:0:7:252:-23.0111,-2.10721,0	1/1:26:0,26:0:0:26:904:-81.6586,-7.82678,0	1/1:139:0,139:0:0:139:4947:-445.238,-41.8432,0	0/1:249:115,134:115:4075:134:4733:-350.175,0,-291.981	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:298:1,297:1:36:297:10486:-939.887,-86.1087,0	0/1:372:196,176:196:6943:176:6245:-449.773,0,-512.951	1/1:203:2,201:2:72:201:7101:-632.017,-54.2724,0	1/1:149:0,147:0:0:147:5239:-471.287,-44.2514,0	0/1:217:114,103:114:4064:103:3608:-259.533,0,-300.622	1/1:294:0,294:0:0:294:10463:-940.384,-88.5028,0	1/1:107:0,107:0:0:107:3776:-339.699,-32.2102,0	1/1:141:0,141:0:0:141:4999:-449.884,-42.4452,0	0/1:172:83,89:83:2942:89:3156:-232.022,0,-213.238	0/1:42:23,19:23:820:19:655:-46.6096,0,-61.4793	0/1:162:99,63:99:3485:63:2222:-151.143,0,-264.775	0/1:170:101,69:101:3624:69:2448:-169.355,0,-275.19	1/1:326:0,326:0:0:326:11568:-1040.43,-98.1358,0	0/1:385:205,180:205:7316:180:6365:-456.832,0,-542.594	1/1:83:0,83:0:0:83:2963:-265.324,-24.9855,0	1/1:226:1,224:1:36:224:7967:-713.232,-64.4933,0	1/1:11:0,11:0:0:11:374:-33.9654,-3.31133,0	1/1:228:0,228:0:0:228:8085:-727.181,-68.6348,0	0/1:233:119,113:119:4231:113:3996:-289.679,0,-310.875	0/1:447:213,234:213:7616:234:8345:-615.911,0,-550.911	0/1:178:99,79:99:3494:79:2801:-198.745,0,-261.068	0/1:153:77,76:77:2725:76:2684:-195.621,0,-199.436	0/1:136:79,57:79:2783:57:2014:-140.58,0,-209.77	0/1:262:144,118:144:5078:118:4220:-301.036,0,-378.299	0/1:66:27,39:27:972:39:1361:-102.892,0,-67.9299	1/1:162:0,162:0:0:162:5709:-513.433,-48.7669,0	1/1:176:0,175:0:0:175:6225:-559.235,-52.6803,0	1/1:124:0,124:0:0:124:4399:-394.801,-37.3277,0	0/1:265:137,128:137:4821:128:4531:-327.816,0,-354.275	0/1:176:122,54:122:4340:54:1927:-120.725,0,-337.794	1/1:264:1,263:1:36:263:9319:-833.707,-75.8736,0	1/1:217:0,217:0:0:217:7714:-694.243,-65.3235,0
chr01	2073524	.	TCCT	TCCG,CCCG	221591	PASS	AB=0.472886,0.524205;ABP=33.7443,27.5038;AC=145,43;AF=0.771277,0.228723;AN=188;AO=7793,2542;CIGAR=3M1X,1X2M1X;DP=10388;DPB=10389.5;DPRA=112.891,2.00064;EPP=16916.6,5522.89;EPPR=44.2683;GTI=1;LEN=1,4;MEANALT=1.86957,2.28571;MQM=59.9302,59.8965;MQMR=60;NS=94;NUMALT=2;ODDS=1.49909;PAIRED=0,0;PAIREDR=0;PAO=0,4;PQA=0,140;PQR=0;PRO=0;QA=278225,89334;QR=621;RO=19;RPL=7792,2542;RPP=16916.6,5522.89;RPPR=44.2683;RPR=1,0;RUN=1,1;SAF=0,0;SAP=16925.3,5522.89;SAR=7793,2542;SRF=0;SRP=44.2683;SRR=19;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,53,1:0:0:53,1:1872,29:-168.24,-15.9546,0,-165.932,-13.356,-165.631	1/2:200:0,98,102:0:0:98,102:3496,3584:-577.052,-292.064,-262.563,-285.342,0,-254.637	1/1:131:1,130,0:1:28:130,0:4645,0:-415.412,-36.6352,0,-415.713,-39.1339,-417.931	1/1:268:1,267,0:1:32:267,0:9506,0:-852.3,-77.4767,0,-852.601,-80.375,-855.179	1/1:32:0,32,0:0:0:32,0:1144,0:-103.27,-9.63296,0,-103.27,-9.63296,-103.27	1/1:47:0,47,0:0:0:47,0:1680,0:-151.451,-14.1484,0,-151.451,-14.1484,-151.451	1/1:142:1,140,1:1:36:140,1:5000,36:-446.51,-39.2068,0,-443.873,-39.2068,-446.51	1/1:124:0,122,2:0:0:122,2:4348,72:-391.137,-36.7257,0,-385.262,-30.491,-384.66	1/2:162:1,73,88:1:26:73,88:2584,3050:-456.023,-245.847,-225.91,-208.529,0,-184.076	1/1:136:0,136,0:0:0:136,0:4860,0:-437.554,-40.9401,0,-437.554,-40.9401,-437.554	1/1:58:0,58,0:0:0:58,0:2068,0:-186.391,-17.4597,0,-186.391,-17.4597,-186.391	1/2:86:0,40,45:0:0:40,45:1415,1599:-245.545,-130.294,-118.253,-115.246,0,-101.699	1/2:54:0,28,26:0:0:28,26:1004,899:-155.255,-73.3956,-64.9668,-82.2112,0,-74.3844	1/2:59:0,29,29:0:0:29,29:1040,1002:-166.226,-81.3984,-72.6685,-84.8201,0,-76.0902	1/2:72:0,33,39:0:0:33,39:1184,1388:-209.65,-113.073,-103.139,-96.5746,0,-84.8344	1/1:51:0,50,1:0:0:50,1:1787,36:-160.752,-15.0515,0,-157.815,-11.7543,-157.514	1/1:71:1,69,0:1:36:69,0:2458,0:-217.867,-17.8337,0,-218.168,-20.7711,-221.106	1/2:63:0,24,39:0:0:24,39:856,1359:-180.635,-110.852,-103.627,-70.1364,0,-58.3962	1/1:40:0,40,0:0:0:40,0:1419,0:-128.007,-12.0412,0,-128.007,-12.0412,-128.007	1/1:723:1,713,1:1:36:713,1:25525,30:-2292.93,-211.696,0,-2290.83,-212.242,-2293.47	1/2:178:0,74,104:0:0:74,104:2640,3647:-512.346,-297.129,-274.853,-215.571,0,-184.264	1/2:92:0,24,67:0:0:24,67:860,2363:-262.54,-192.399,-185.175,-70.1374,0,-49.9683	1/1:92:0,92,0:0:0:92,0:3257,0:-293.352,-27.6948,0,-293.352,-27.6948,-293.352	1/2:176:0,93,83:0:0:93,83:3316,2904:-506.921,-236.61,-208.615,-270.664,0,-245.678	1/1:54:0,54,0:0:0:54,0:1912,0:-172.358,-16.2556,0,-172.358,-16.2556,-172.358	1/1:348:2,344,1:2:72:344,1:12296,36:-1099.44,-97.6795,0,-1097.11,-100.617,-1102.68	1/2:231:0,146,85:0:0:146,85:5232,2993:-670.721,-244.013,-200.063,-427.062,0,-401.475	1/1:32:0,32,0:0:0:32,0:1144,0:-103.27,-9.63296,0,-103.27,-9.63296,-103.27	1/1:302:2,298,1:2:72:298,1:10688,36:-954.997,-83.8171,0,-952.661,-86.7645,-958.235	1/1:155:0,152,1:0:0:152,1:5377,35:-483.677,-45.7566,0,-480.829,-42.9121,-480.528	1/2:128:0,52,76:0:0:52,76:1864,2645:-367.422,-215.39,-199.737,-152.386,0,-129.508	1/1:6:0,6,0:0:0:6,0:216,0:-19.7871,-1.80618,0,-19.7871,-1.80618,-19.7871	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:8:0,5,3:0:0:5,3:176,106:-23.3132,-8.98601,-7.48086,-14.6799,0,-13.7768	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:184:0,84,100:0:0:84,100:3016,3524:-533.291,-287.263,-261.977,-246.384,0,-216.281	1/2:125:0,65,60:0:0:65,60:2316,2114:-361.241,-172.466,-152.899,-189.129,0,-171.067	1/1:57:0,57,0:0:0:57,0:2036,0:-183.504,-17.1587,0,-183.504,-17.1587,-183.504	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:388:0,191,196:0:0:191,196:6832,6911:-1119.36,-562.264,-504.767,-557.09,0,-498.088	1/1:35:0,34,0:0:0:34,0:1224,0:-110.224,-10.235,0,-110.224,-10.235,-110.224	1/1:130:0,129,0:0:0:129,0:4592,0:-413.095,-38.8329,0,-413.095,-38.8329,-413.095	1/1:88:0,88,0:0:0:88,0:3122,0:-281.201,-26.4906,0,-281.201,-26.4906,-281.201	1/2:58:0,30,28:0:0:30,28:1072,981:-167.58,-80.172,-71.1411,-87.7616,0,-79.3327	1/1:100:0,99,0:0:0:99,0:3529,0:-317.458,-29.802,0,-317.458,-29.802,-317.458	1/2:86:1,43,42:1:29:43,42:1544,1471:-243.092,-117.441,-106.804,-123.708,0,-113.372	1/2:79:0,36,43:0:0:36,43:1276,1506:-226.205,-122.259,-111.422,-104.298,0,-91.3535	1/1:153:1,149,0:1:23:149,0:5332,0:-477.581,-43.1095,0,-477.882,-44.8535,-479.65	1/2:186:1,96,87:1:36:96,87:3424,3055:-524.515,-245.694,-219.732,-276.179,0,-252.927	1/1:191:0,188,2:0:0:188,2:6716,72:-604.154,-56.5936,0,-598.279,-50.7188,-597.677	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:183:0,88,95:0:0:88,95:3132,3382:-530.73,-275.469,-248.978,-255.277,0,-226.679	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:22:0,22,0:0:0:22,0:776,0:-70.1622,-6.62266,0,-70.1622,-6.62266,-70.1622	1/1:106:0,106,0:0:0:106,0:3788,0:-341.119,-31.9092,0,-341.119,-31.9092,-341.119	1/1: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chr01	2074765	.	T	C	122387	PASS	AB=0.48985;ABP=6.05189;AC=144;AF=0.765957;AN=188;AO=5784;CIGAR=1X;DP=7528;DPB=7528;DPRA=54.529;EPP=12554.1;EPPR=3772.69;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.9834;MQMR=59.981;NS=94;NUMALT=1;ODDS=0.504791;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205988;QR=62277;RO=1740;RPL=1;RPP=12554.1;RPPR=3772.69;RPR=5783;RUN=1;SAF=0;SAP=12562.8;SAR=5784;SRF=0;SRP=3781.37;SRR=1740;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:101:35,66:35:1260:66:2362:-182.434,0,-83.3015	1/1:131:0,131:0:0:131:4656:-419.203,-39.4349,0	1/1:145:1,144:1:36:144:5154:-460.403,-40.0511,0	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	1/1:75:0,75:0:0:75:2671:-240.635,-22.5773,0	1/1:105:0,105:0:0:105:3740:-336.8,-31.6082,0	1/1:130:0,130:0:0:130:4642:-417.942,-39.1339,0	0/1:57:21,36:21:743:36:1283:-98.6139,0,-50.0346	1/1:95:0,95:0:0:95:3362:-302.796,-28.5979,0	1/1:37:0,37:0:0:37:1301:-117.389,-11.1381,0	0/1:37:17,20:17:608:20:696:-51.8215,0,-43.9139	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:32:21,11:21:748:11:396:-26.3498,0,-58.0123	0/1:35:10,25:10:360:25:888:-69.703,0,-22.2083	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:34:0,34:0:0:34:1207:-108.935,-10.235,0	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	1/1:24:0,24:0:0:24:847:-76.5487,-7.22472,0	1/1:195:0,195:0:0:195:6971:-627.453,-58.7009,0	0/1:139:58,81:58:2080:81:2883:-217.864,0,-145.627	0/1:237:194,43:194:6931:43:1520:-65.7476,0,-552.51	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:94:54,40:54:1927:40:1440:-101.601,0,-145.405	1/1:64:0,64:0:0:64:2292:-206.54,-19.2659,0	1/1:274:0,273:0:0:273:9699:-872.505,-82.1812,0	0/1:154:65,89:65:2336:89:3174:-239.525,0,-164.139	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	1/1:225:1,224:1:36:224:8034:-719.48,-64.1335,0	1/1:141:0,141:0:0:141:5039:-453.65,-42.4452,0	0/1:67:24,43:24:864:43:1548:-119.444,0,-57.9136	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:122:57,65:57:2048:65:2312:-171.614,0,-147.866	0/1:155:68,86:68:2440:86:3054:-228.101,0,-173.114	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:154:73,81:73:2607:81:2861:-211.368,0,-188.519	1/1:17:0,17:0:0:17:596:-53.9678,-5.11751,0	1/1:137:0,137:0:0:137:4924:-443.308,-41.2411,0	1/1:30:0,30:0:0:30:1050:-94.8096,-9.0309,0	0/1:35:17,18:17:608:18:632:-46.6707,0,-44.516	1/1:114:0,114:0:0:114:4079:-367.296,-34.3174,0	0/1:102:74,28:74:2636:28:1008:-60.3267,0,-206.78	0/1:169:79,90:79:2836:90:3171:-234.739,0,-204.604	1/1:139:0,139:0:0:139:4965:-446.999,-41.8432,0	0/1:125:63,62:63:2264:62:2223:-162.705,0,-166.394	1/1:214:2,211:2:72:211:7489:-667.212,-57.6425,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:133:62,71:62:2224:71:2516:-186.654,0,-160.387	1/1:49:0,49:0:0:49:1711:-154.27,-14.7505,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:71:0,71:0:0:71:2503:-225.52,-21.3731,0	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:98:0,98:0:0:98:3496:-314.845,-29.5009,0	0/1:77:37,40:37:1324:40:1431:-105.908,0,-96.2828	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:165:0,165:0:0:165:5859:-527.423,-49.67,0	0/1:164:58,106:58:2076:106:3774:-290.491,0,-137.742	1/1:75:1,74:1:32:74:2647:-235.277,-19.3779,0	1/1:46:0,46:0:0:46:1644:-148.248,-13.8474,0	0/1:125:66,59:66:2372:59:2088:-150.559,0,-176.109	1/1:158:0,158:0:0:158:5590:-503.223,-47.5627,0	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	1/1:84:0,84:0:0:84:2995:-269.783,-25.2865,0	0/1:66:37,29:37:1315:29:1028:-72.9651,0,-98.783	0/1:33:16,17:16:568:17:612:-45.4794,0,-41.5179	0/1:109:58,51:58:2076:51:1808:-130.187,0,-154.29	0/1:64:38,26:38:1360:26:932:-64.9329,0,-103.435	1/1:136:0,136:0:0:136:4858:-437.372,-40.9401,0	0/1:160:78,82:78:2796:82:2906:-213.61,0,-203.715	1/1:165:0,165:0:0:165:5907:-531.738,-49.67,0	1/1:130:0,130:0:0:130:4619:-415.874,-39.1339,0	1/1:9:0,9:0:0:9:313:-28.5051,-2.70927,0	1/1:97:0,97:0:0:97:3461:-311.701,-29.1999,0	0/1:60:54,6:54:1936:6:212:-1.363,0,-156.455	0/1:215:112,102:112:4012:102:3641:-263.113,0,-296.489	0/1:68:32,36:32:1131:36:1292:-96.1137,0,-81.6277	0/1:21:8,13:8:284:13:468:-36.138,0,-19.5817	0/1:39:20,19:20:720:19:671:-48.9756,0,-53.3886	0/1:67:32,35:32:1140:35:1252:-92.8161,0,-82.7402	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	1/1:27:0,27:0:0:27:951:-85.9028,-8.12781,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:48:27,21:27:964:21:739:-52.3829,0,-72.6274	0/1:32:21,11:21:743:11:387:-25.533,0,-57.5604	1/1:88:0,88:0:0:88:3128:-281.745,-26.4906,0	1/1:36:0,36:0:0:36:1269:-114.511,-10.8371,0
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chr01	2077727	.	G	A	28336.4	PASS	AB=0.50972;ABP=6.092;AC=40;AF=0.212766;AN=188;AO=1919;CIGAR=1X;DP=7579;DPB=7579;DPRA=1.35712;EPP=4170.07;EPPR=12280.5;GTI=2;LEN=1;MEANALT=1.06818;MQM=51.5941;MQMR=59.9781;NS=94;NUMALT=1;ODDS=0.752656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64428;QR=202299;RO=5654;RPL=0;RPP=4170.07;RPPR=12280.5;RPR=1919;RUN=1;SAF=1919;SAP=4170.07;SAR=0;SRF=5654;SRP=12280.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:117:59,58:59:2116:58:1900:-135.136,0,-155.488	0/0:126:126,0:126:4521:0:0:0,-37.9298,-407.055	0/0:161:161,0:161:5761:0:0:0,-48.4658,-518.602	0/0:65:65,0:65:2325:0:0:0,-19.5669,-209.508	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.151	0/1:57:25,32:25:900:32:1103:-81.8879,0,-64.1623	0/0:72:72,0:72:2565:0:0:0,-21.6742,-231.099	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.974	0/1:64:31,33:31:1085:33:1146:-83.094,0,-78.691	0/1:40:14,25:14:504:25:832:-62.5919,0,-33.6832	0/1:55:28,27:28:1008:27:934:-67.5847,0,-74.4797	0/1:58:21,37:21:756:37:1215:-91.9147,0,-50.9071	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/0:54:54,0:54:1917:0:0:0,-16.2556,-172.805	0/1:38:19,19:19:680:19:624:-44.4873,0,-50.09	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:212:212,0:212:7612:0:0:0,-63.8184,-685.105	0/1:117:57,60:57:2036:60:1982:-142.867,0,-148.292	0/1:127:41,86:41:1464:86:2889:-220.337,0,-93.8252	0/0:55:52,0:52:1860:0:0:0,-15.6536,-167.32	0/1:100:46,54:46:1652:54:1815:-132.856,0,-118.865	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.16	0/0:185:185,0:185:6633:0:0:0,-55.6905,-597.044	0/1:123:65,58:65:2328:58:1944:-136.337,0,-172.753	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:276:276,0:276:9881:0:0:0,-83.0843,-889.23	0/0:142:142,0:142:5092:0:0:0,-42.7463,-458.387	0/1:107:51,56:51:1817:56:1876:-136.535,0,-131.599	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:5:4,1:4:144:1:36:-2.07362,0,-11.8085	0/1:3:1,2:1:36:2:57:-4.48767,0,-2.69518	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:174:89,85:89:3173:85:2957:-212.953,0,-233.414	0/1:192:95,97:95:3389:97:3247:-233.386,0,-247.427	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.839	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:152:94,57:94:3357:57:1944:-128.904,0,-256.678	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:142:142,0:142:5084:0:0:0,-42.7463,-457.704	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:41:21,20:21:737:20:652:-46.312,0,-54.3084	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:95:48,47:48:1705:47:1551:-110.206,0,-125.136	0/1:124:69,55:69:2480:55:1904:-133.622,0,-186.125	0/0:101:100,1:100:3580:1:36:0,-26.8109,-318.813	0/1:103:55,48:55:1957:48:1602:-112.872,0,-145.398	0/0:145:144,1:144:5165:1:36:0,-40.0511,-461.389	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:281:146,134:146:5213:134:4190:-290.763,0,-384.809	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:108:106,2:106:3796:2:72:0,-25.6917,-335.019	0/0:16:15,1:15:540:1:21:0,-2.7167,-46.8368	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:90:43,47:43:1548:47:1639:-120.192,0,-112.52	0/1:10:6,4:6:216:4:144:-10.2844,0,-16.7802	0/0:191:191,0:191:6788:0:0:0,-57.4967,-610.991	0/1:151:81,70:81:2892:70:2354:-166.108,0,-215.059	0/0:51:51,0:51:1821:0:0:0,-15.3525,-164.169	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/1:134:67,67:67:2400:67:2289:-165.423,0,-175.919	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.952	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:80:80,0:80:2857:0:0:0,-24.0824,-257.366	0/1:60:24,36:24:864:36:1211:-91.0445,0,-60.0208	0/1:9:1,8:1:36:8:269:-21.6643,0,-0.889005	0/1:117:57,60:57:2044:60:2023:-145.244,0,-149.01	0/1:39:19,20:19:684:20:648:-46.6012,0,-50.1502	0/0:102:102,0:102:3648:0:0:0,-30.7051,-328.523	0/1:150:80,70:80:2853:70:2369:-167.025,0,-211.852	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:130:130,0:130:4653:0:0:0,-39.1339,-418.93	0/1:99:53,46:53:1870:46:1514:-105.648,0,-138.771	0/1:218:99,119:99:3526:119:4035:-297.015,0,-251.921	0/1:98:43,55:43:1548:55:1787:-130.697,0,-110.112	0/1:37:18,19:18:648:19:635:-46.1251,0,-47.5138	0/1:56:26,30:26:920:30:1019:-74.6202,0,-66.2594	0/1:115:54,61:54:1940:61:2105:-154.773,0,-140.258	0/1:39:18,21:18:629:21:728:-53.7699,0,-45.1927	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.377	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:103:46,57:46:1644:57:2002:-148.999,0,-117.243	0/1:57:24,33:24:860:33:1092:-81.2363,0,-60.5631	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022
chr01	2077861	.	A	G	33490.6	PASS	AB=0.544343;ABP=63.0955;AC=42;AF=0.223404;AN=188;AO=1923;CIGAR=1X;DP=6705;DPB=6705;DPRA=1.61781;EPP=4092.34;EPPR=10218.3;GTI=5;LEN=1;MEANALT=1.02174;MQM=58.6089;MQMR=59.7793;NS=94;NUMALT=1;ODDS=0.930813;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68803;QR=171234;RO=4780;RPL=1913;RPP=4092.34;RPPR=10226.9;RPR=10;RUN=1;SAF=0;SAP=4178.75;SAR=1923;SRF=1;SRP=10374;SRR=4779;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.779	0/1:65:20,45:20:720:45:1616:-126.095,0,-45.5609	0/0:130:129,1:129:4640:1:36:0,-35.5366,-414.144	0/0:125:125,0:125:4460:0:0:0,-37.6287,-401.538	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.544	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.599	0/0:65:64,1:64:2259:1:36:0,-15.9687,-199.97	0/0:96:96,0:96:3433:0:0:0,-28.8989,-309.178	0/1:36:22,14:22:788:14:504:-34.8487,0,-60.3515	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.077	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.188	0/1:64:24,40:24:860:40:1436:-110.069,0,-58.0268	0/1:52:30,22:30:1076:22:792:-55.9321,0,-81.4855	0/1:34:12,22:12:424:22:788:-60.9819,0,-28.2614	0/1:63:30,33:30:1068:33:1184:-87.8816,0,-77.4672	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.728	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.278	0/1:36:19,16:19:680:16:561:-39.9096,0,-50.6335	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2739	0/0:98:98,0:98:3512:0:0:0,-29.5009,-315.76	0/1:109:56,53:56:2012:53:1904:-138.725,0,-148.541	0/1:124:22,102:22:792:102:3656:-291.895,0,-34.278	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:92:45,47:45:1620:47:1688:-124.446,0,-118.375	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.574	0/0:147:147,0:147:5272:0:0:0,-44.2514,-474.589	0/1:136:68,68:68:2421:68:2444:-179.173,0,-177.204	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:214:213,1:213:7614:1:36:0,-60.8221,-681.696	0/0:113:113,0:113:4056:0:0:0,-34.0164,-364.23	0/1:72:24,48:24:864:48:1711:-132.599,0,-56.4084	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5025	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:6:3,3:3:108:3:108:-8.26617,0,-8.26899	0/1:5:1,4:1:36:4:144:-11.8047,0,-2.09312	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:186:86,100:86:3096:100:3578:-266.154,0,-222.689	0/1:185:93,92:93:3344:92:3290:-240.5,0,-245.201	0/0:51:50,0:50:1792:0:0:0,-15.0515,-161.35	0/1:6:4,2:4:144:2:72:-5.02892,0,-11.4894	0/1:121:37,84:37:1313:84:2968:-230.097,0,-82.0451	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.688	0/0:125:125,0:125:4492:0:0:0,-37.6287,-404.273	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:55:32,23:32:1152:23:811:-56.7409,0,-87.058	0/0:77:77,0:77:2768:0:0:0,-23.1793,-248.341	0/1:129:60,69:60:2160:69:2464:-183.112,0,-155.777	0/1:163:102,61:102:3664:61:2196:-148.815,0,-280.866	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:108:36,72:36:1269:72:2572:-199.144,0,-81.9995	0/0:166:166,0:166:5934:0:0:0,-49.971,-534.161	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9812	0/1:142:63,79:63:2253:79:2836:-212.53,0,-160.271	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:97:95,2:95:3420:2:72:0,-22.3664,-301.173	0/0:22:22,0:22:777:0:0:0,-6.62266,-70.2303	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0649	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:94:42,52:42:1512:52:1872:-140.376,0,-107.707	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:145:145,0:145:5205:0:0:0,-43.6493,-468.585	0/1:73:19,54:19:680:54:1928:-151.803,0,-39.554	0/0:50:49,1:49:1764:1:36:0,-11.4549,-155.391	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.697	0/1:121:61,60:61:2184:60:2124:-154.995,0,-160.367	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/0:70:70,0:70:2512:0:0:0,-21.0721,-225.646	0/1:77:36,41:36:1292:41:1472:-109.584,0,-93.4045	0/1:19:8,11:8:288:11:385:-29.2582,0,-20.5478	0/1:139:56,83:56:1993:83:2960:-224.688,0,-137.799	0/1:64:33,31:33:1143:31:1108:-80.7352,0,-83.9036	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.9	0/1:165:87,78:87:3097:78:2808:-203.231,0,-229.264	0/0:39:39,0:39:1359:0:0:0,-11.7402,-122.47	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.12	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:102:102,0:102:3649:0:0:0,-30.7051,-328.594	0/1:102:46,56:46:1648:56:1992:-148.802,0,-117.903	0/1:191:102,89:102:3656:89:3175:-228.377,0,-271.719	0/1:68:28,40:28:1008:40:1440:-109.405,0,-70.5581	0/1:46:17,29:17:612:29:1044:-80.3457,0,-41.5661	0/1:67:39,28:39:1396:28:1004:-70.5059,0,-105.714	0/1:120:56,64:56:1989:64:2292:-170.382,0,-143.159	0/1:31:17,14:17:612:14:504:-36.3534,0,-46.0815	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.23	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3195	0/1:67:45,22:45:1620:22:788:-51.0309,0,-125.921	0/1:85:21,64:21:748:64:2296:-181.288,0,-42.0577	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:77:77,0:77:2768:0:0:0,-23.1793,-248.751
chr01	2078310	.	T	C	86623.4	PASS	AB=0.465116;ABP=35.7339;AC=146;AF=0.776596;AN=188;AO=4402;CIGAR=1X;DP=6068;DPB=6068;DPRA=65.2366;EPP=9561.83;EPPR=3607.65;GTI=7;LEN=1;MEANALT=1.06452;MQM=40.6493;MQMR=42.8584;NS=94;NUMALT=1;ODDS=0.985507;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157473;QR=59460;RO=1660;RPL=0;RPP=9561.83;RPPR=3607.65;RPR=4402;RUN=1;SAF=4402;SAP=9561.83;SAR=0;SRF=1660;SRP=3607.65;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1248:-109.065,-10.5361,0	0/1:63:24,39:24:860:39:1400:-102.956,0,-56.4459	1/1:107:0,107:0:0:107:3810:-330.79,-32.2102,0	1/1:96:0,96:0:0:96:3436:-297.861,-28.8989,0	1/1:19:0,19:0:0:19:676:-59.1209,-5.71957,0	1/1:29:0,29:0:0:29:1040:-90.8941,-8.72987,0	1/1:59:0,59:0:0:59:2104:-182.016,-17.7608,0	1/1:67:0,67:0:0:67:2404:-209.577,-20.169,0	0/1:29:17,12:17:597:12:428:-28.908,0,-44.067	1/1:37:0,37:0:0:37:1332:-115.343,-11.1381,0	1/1:75:0,75:0:0:75:2683:-232.764,-22.5773,0	0/1:93:50,43:50:1800:43:1544:-106.366,0,-130.659	0/1:54:26,28:26:936:28:999:-70.9172,0,-65.3107	0/1:98:51,47:51:1832:47:1680:-116.736,0,-131.849	0/1:47:23,24:23:828:24:864:-60.8189,0,-58.992	1/1:61:0,61:0:0:61:2175:-188.1,-18.3628,0	1/1:35:0,35:0:0:35:1260:-109.951,-10.5361,0	0/1:18:8,10:8:288:10:360:-26.1711,0,-20.2313	1/1:37:0,37:0:0:37:1316:-114.269,-11.1381,0	1/1:113:0,112:0:0:112:4004:-345.332,-33.7154,0	0/1:93:56,37:56:1989:37:1328:-87.8944,0,-147.562	0/1:88:59,29:59:2116:29:1032:-63.1049,0,-160.015	1/1:17:0,17:0:0:17:612:-52.3937,-5.11751,0	0/1:43:31,12:31:1104:12:432:-23.9896,0,-84.1579	1/1:59:0,59:0:0:59:2103:-182.743,-17.7608,0	1/1:158:0,158:0:0:158:5637:-488.319,-47.5627,0	0/1:175:93,81:93:3344:81:2908:-200.869,0,-241.184	1/1:36:0,35:0:0:35:1260:-109.663,-10.5361,0	1/1:138:0,138:0:0:138:4948:-427.873,-41.5421,0	1/1:69:0,68:0:0:68:2415:-210.204,-20.47,0	0/1:37:24,13:24:841:13:468:-29.7554,0,-63.3886	1/1:1:0,1:0:0:1:36:-3.4807,-0.30103,0	1/1:4:0,4:0:0:4:140:-12.5713,-1.20412,0	0/1:4:2,2:2:72:2:72:-5.4092,0,-5.4858	1/1:2:0,2:0:0:2:72:-6.61332,-0.60206,0	1/1:7:0,7:0:0:7:248:-22.0803,-2.10721,0	0/1:118:65,53:65:2332:53:1904:-129.088,0,-169.844	0/1:99:57,42:57:2044:42:1509:-101.514,0,-150.449	1/1:46:0,46:0:0:46:1656:-144.326,-13.8474,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:89:48,41:48:1713:41:1457:-98.8751,0,-122.188	1/1:13:0,13:0:0:13:464:-40.824,-3.91339,0	1/1:94:0,94:0:0:94:3364:-292.976,-28.2968,0	1/1:55:0,55:0:0:55:1972:-171.048,-16.5567,0	0/1:36:17,19:17:612:19:680:-48.1429,0,-43.238	1/1:80:0,80:0:0:80:2872:-248.205,-24.0824,0	0/1:89:49,40:49:1756:40:1440:-98.1159,0,-127.096	0/1:116:63,53:63:2249:53:1904:-130.247,0,-163.426	1/1:35:0,35:0:0:35:1248:-105.939,-10.5361,0	0/1:97:63,33:63:2245:33:1184:-73.4288,0,-168.707	1/1:84:0,83:0:0:83:2982:-256.512,-24.9855,0	1/1:8:0,8:0:0:8:288:-25.2178,-2.40824,0	0/1:131:77,54:77:2768:54:1940:-129.067,0,-202.266	1/1:59:0,59:0:0:59:2100:-181.821,-17.7608,0	1/1:10:0,10:0:0:10:360:-31.5896,-3.0103,0	1/1:142:0,142:0:0:142:5026:-433.864,-42.7463,0	1/1:11:0,11:0:0:11:392:-34.3853,-3.31133,0	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	1/1:9:0,9:0:0:9:324:-28.2987,-2.70927,0	1/1:62:0,62:0:0:62:2212:-192.155,-18.6639,0	0/1:163:84,79:84:3020:79:2840:-196.606,0,-216.815	0/1:5:2,3:2:72:3:108:-8.10499,0,-5.14647	1/1:89:0,89:0:0:89:3184:-274.176,-26.7917,0	0/1:115:58,57:58:2084:57:2019:-139.881,0,-146.809	0/1:60:7,53:7:252:53:1900:-147.491,0,-4.47265	1/1:46:0,46:0:0:46:1644:-140.837,-13.8474,0	0/1:102:67,35:67:2400:35:1252:-78.1149,0,-180.939	1/1:121:0,121:0:0:121:4316:-372.476,-36.4246,0	1/1:54:0,54:0:0:54:1940:-169.064,-16.2556,0	1/1:53:0,53:0:0:53:1904:-165.914,-15.9546,0	0/1:58:33,25:33:1180:25:900:-60.4629,0,-86.8101	0/1:18:10,8:10:360:8:288:-19.7992,0,-26.6226	0/1:119:57,62:57:2044:62:2213:-156.904,0,-144.125	0/1:65:43,22:43:1525:22:792:-49.3243,0,-113.624	1/1:88:0,88:0:0:88:3125:-271.746,-26.4906,0	0/1:110:66,44:66:2376:44:1572:-103.333,0,-176.264	1/1:88:1,87:1:36:87:3110:-267.479,-22.9696,0	1/1:89:2,87:2:72:87:3109:-264.347,-20.1018,0	1/1:3:0,3:0:0:3:104:-9.43593,-0.90309,0	1/1:58:0,58:0:0:58:2080:-180.41,-17.4597,0	0/1:115:54,61:54:1936:61:2188:-155.897,0,-135.355	0/1:105:51,54:51:1828:54:1936:-134.181,0,-129.571	0/1:35:18,17:18:648:17:612:-42.6631,0,-46.8066	0/1:54:28,26:28:1008:26:932:-64.6566,0,-72.7057	0/1:41:20,21:20:712:21:744:-52.2777,0,-50.7469	0/1:100:39,61:39:1400:61:2188:-158.378,0,-93.4639	0/1:20:9,11:9:324:11:392:-28.4844,0,-22.8488	1/1:59:1,58:1:36:58:2084:-177.361,-14.2398,0	1/1:55:0,55:0:0:55:1958:-170.945,-16.5567,0	1/1:57:1,56:1:36:56:2008:-171.007,-13.6377,0	0/1:130:61,69:61:2173:69:2471:-175.095,0,-151.36	0/1:64:44,20:44:1576:20:716:-42.6327,0,-119.588	1/1:71:0,71:0:0:71:2544:-220.279,-21.3731,0	1/1:70:0,70:0:0:70:2512:-217.12,-21.0721,0
chr01	2078448	.	CGGT	TGGC,CGGC	177965	PASS	AB=0.488175,0.507463;ABP=7.73507,4.89008;AC=147,40;AF=0.781915,0.212766;AN=188;AO=6408,1993;CIGAR=1X2M1X,3M1X;DP=8444;DPB=8444.75;DPRA=18.1484,1.31059;EPP=13770.5,4304.74;EPPR=13.8677;GTI=4;LEN=4,1;MEANALT=1.88172,2.33333;MQM=54.0034,59.4967;MQMR=54;NS=94;NUMALT=2;ODDS=0.668757;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=108,0;PQR=0;PRO=0;QA=224517,71130;QR=171;RO=5;RPL=6391,1990;RPP=13770.5,4304.74;RPPR=13.8677;RPR=17,3;RUN=1,1;SAF=0,0;SAP=13917.8,4330.75;SAR=6408,1993;SRF=0;SRP=13.8677;SRR=5;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:449,0:-40.5204,-3.91339,0,-40.5204,-3.91339,-40.5204	1/2:166:0,89,76:0:0:89,76:3133,2711:-474.165,-220.963,-194.171,-253.196,0,-230.318	1/1:102:0,102,0:0:0:102,0:3610,0:-323.365,-30.7051,0,-323.365,-30.7051,-323.365	1/1:178:0,177,0:0:0:177,0:6213,0:-558.163,-53.2823,0,-558.163,-53.2823,-558.163	1/1:68:0,67,0:0:0:67,0:2357,0:-211.127,-20.169,0,-211.127,-20.169,-211.127	1/1:71:0,70,0:0:0:70,0:2443,0:-218.951,-21.0721,0,-218.951,-21.0721,-218.951	1/1:103:0,103,0:0:0:103,0:3611,0:-324.541,-31.0061,0,-324.541,-31.0061,-324.541	1/1:160:0,160,0:0:0:160,0:5592,0:-500.154,-48.1648,0,-500.154,-48.1648,-500.154	1/2:39:0,17,22:0:0:17,22:600,788:-113.332,-64.6058,-59.4883,-49.0803,0,-42.4577	1/1:104:0,104,0:0:0:104,0:3648,0:-328.037,-31.3071,0,-328.037,-31.3071,-328.037	1/1:32:0,31,0:0:0:31,0:1092,0:-97.5184,-9.33193,0,-97.5184,-9.33193,-97.5184	1/2:66:0,31,35:0:0:31,35:1083,1256:-190.371,-102.785,-93.4528,-87.939,0,-77.4029	1/2:38:0,21,17:0:0:21,17:726,612:-108.939,-50.2926,-43.9709,-58.9994,0,-53.8818	1/2:48:0,21,27:0:0:21,27:737,940:-136.673,-76.7778,-70.4561,-60.2445,0,-52.1167	1/2:50:0,27,23:0:0:27,23:936,828:-143.89,-67.9181,-59.7903,-76.3256,0,-69.4019	1/1:28:0,27,0:0:0:27,0:935,0:-83.8578,-8.12781,0,-83.8578,-8.12781,-83.8578	1/1:61:0,60,1:0:0:60,1:2124,36:-189.159,-18.0618,0,-186.221,-14.7646,-185.92	1/2:24:0,9,15:0:0:9,15:319,536:-69.8802,-43.9636,-41.2543,-26.2712,0,-21.7558	1/1:24:0,24,0:0:0:24,0:840,0:-75.7453,-7.22472,0,-75.7453,-7.22472,-75.7453	1/1:209:0,206,0:0:0:206,0:7175,0:-644.212,-62.0122,0,-644.212,-62.0122,-644.212	1/2:65:0,38,27:0:0:38,27:1350,968:-188.793,-79.3049,-67.8658,-109.844,0,-101.716	1/2:193:1,54,138:1:36:54,138:1885,4925:-550.703,-398.003,-384.684,-150.054,0,-111.45	1/1:59:0,59,0:0:0:59,0:2080,0:-187.24,-17.7608,0,-187.24,-17.7608,-187.24	1/2:145:0,61,83:0:0:61,83:2157,2961:-416.356,-241.324,-222.961,-175.026,0,-150.041	1/1:55:0,55,0:0:0:55,0:1919,0:-172.449,-16.5567,0,-172.449,-16.5567,-172.449	1/1:344:0,341,0:0:0:341,0:11967,0:-1075.63,-102.651,0,-1075.63,-102.651,-1075.63	1/2:229:0,122,105:0:0:122,105:4306,3760:-655.29,-306.372,-269.647,-348.913,0,-317.305	1/1:28:0,27,0:0:0:27,0:950,0:-85.4163,-8.12781,0,-85.4163,-8.12781,-85.4163	1/1:235:0,234,0:0:0:234,0:8263,0:-741.948,-70.441,0,-741.948,-70.441,-741.948	1/1:185:0,183,1:0:0:183,1:6441,36:-576.95,-55.0885,0,-574.012,-52.1211,-573.711	1/2:111:0,39,72:0:0:39,72:1352,2572:-319.565,-210.037,-198.297,-109.878,0,-88.2035	1/1:19:0,19,0:0:0:19,0:678,0:-61.2571,-5.71957,0,-61.2571,-5.71957,-61.2571	1/1:13:0,13,0:0:0:13,0:458,0:-41.4879,-3.91339,0,-41.4879,-3.91339,-41.4879	0/1:4:1,3,0:1:30:3,0:101,0:-8.20042,0,-1.79545,-8.50145,-2.69854,-10.891	1/2:4:0,1,3:0:0:1,3:36,108:-12.1011,-9.17208,-8.87105,-3.2882,0,-2.38511	1/1:5:0,5,0:0:0:5,0:179,0:-16.4205,-1.50515,0,-16.4205,-1.50515,-16.4205	1/2:133:0,72,59:0:0:72,59:2539,2103:-377.964,-171.399,-149.725,-206.56,0,-188.8	1/2:193:0,89,103:0:0:89,103:3083,3688:-550.01,-300.605,-273.813,-249.398,0,-218.392	1/1:63:0,63,0:0:0:63,0:2204,0:-197.966,-18.9649,0,-197.966,-18.9649,-197.966	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/2:134:0,68,65:0:0:68,65:2360,2308:-379.489,-188.202,-167.732,-191.436,0,-171.869	1/1:23:0,23,0:0:0:23,0:793,0:-71.2213,-6.92369,0,-71.2213,-6.92369,-71.2213	1/1:196:0,194,2:0:0:194,2:6820,72:-610.552,-58.3998,0,-604.677,-52.1652,-604.075	1/1:58:0,58,0:0:0:58,0:2023,0:-182.141,-17.4597,0,-182.141,-17.4597,-182.141	1/2:59:0,24,35:0:0:24,35:850,1248:-171.206,-102.089,-94.8641,-69.4714,0,-58.9353	1/1:60:0,60,0:0:0:60,0:2118,0:-190.51,-18.0618,0,-190.51,-18.0618,-190.51	1/2:152:0,75,75:0:0:75,75:2612,2637:-424.633,-214.194,-191.617,-210.456,0,-187.879	1/2:303:0,159,143:0:0:159,143:5556,5120:-868.042,-417.512,-369.648,-450.586,0,-407.538	1/1:143:0,142,0:0:0:142,0:4947,0:-443.756,-42.7463,0,-443.756,-42.7463,-443.756	1/2:93:0,49,44:0:0:49,44:1718,1580:-268.606,-129.235,-114.485,-139.725,0,-126.479	1/1:181:0,179,0:0:0:179,0:6277,0:-564.162,-53.8844,0,-564.162,-53.8844,-564.162	1/1:3:0,3,0:0:0:3,0:106,0:-9.72065,-0.90309,0,-9.72065,-0.90309,-9.72065	1/2:121:0,58,63:0:0:58,63:2025,2256:-347.516,-184.31,-166.85,-163.558,0,-144.593	1/1:33:0,33,0:0:0:33,0:1143,0:-103.03,-9.93399,0,-103.03,-9.93399,-103.03	1/1:17:0,17,0:0:0:17,0:586,0:-52.9411,-5.11751,0,-52.9411,-5.11751,-52.9411	1/1:125:0,125,0:0:0:125,0:4362,0:-391.521,-37.6288,0,-391.521,-37.6288,-391.521	1/1:73:0,72,0:0:0:72,0:2517,0:-2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chr01	2162321	.	T	C	145162	PASS	AB=0.501893;ABP=3.13359;AC=147;AF=0.790323;AN=186;AO=6825;CIGAR=1X;DP=8814;DPB=8814;DPRA=0;EPP=14814.6;EPPR=4309.04;GTI=0;LEN=1;MEANALT=1.06452;MQM=59.9952;MQMR=60;NS=93;NUMALT=1;ODDS=0.651266;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243679;QR=71072;RO=1983;RPL=6825;RPP=14823.3;RPPR=4309.04;RPR=0;RUN=1;SAF=1;SAP=14814.6;SAR=6824;SRF=0;SRP=4309.04;SRR=1983;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:83:0,83:0:0:83:2968:-267.35,-24.9855,0	0/1:46:12,34:12:432:34:1220:-96.2594,0,-25.3738	1/1:179:0,179:0:0:179:6412:-577.168,-53.8844,0	1/1:280:2,277:2:68:277:9896:-884.12,-77.8828,0	1/1:79:0,79:0:0:79:2815:-253.585,-23.7814,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:146:0,146:0:0:146:5217:-469.668,-43.9504,0	1/1:212:0,212:0:0:212:7579:-682.151,-63.8184,0	0/1:120:33,87:33:1173:87:3116:-244.543,0,-69.752	1/1:78:0,78:0:0:78:2788:-251.161,-23.4803,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:101:46,55:46:1652:55:1959:-146.181,0,-118.564	0/1:63:41,22:41:1476:22:792:-52.6408,0,-114.171	0/1:75:41,34:41:1476:34:1212:-86.8091,0,-110.559	0/1:72:48,24:48:1728:24:860:-56.0477,0,-134.131	1/1:53:0,53:0:0:53:1882:-169.658,-15.9546,0	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	0/1:25:10,15:10:360:15:532:-40.6873,0,-25.2186	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	1/1:202:0,202:0:0:202:7200:-648.059,-60.8081,0	0/1:192:93,99:93:3320:99:3485:-256.065,0,-241.221	0/1:155:106,49:106:3808:49:1756:-111.664,0,-296.257	1/1:132:0,131:0:0:131:4666:-419.741,-39.4349,0	0/1:79:41,38:41:1472:38:1352:-98.199,0,-108.995	1/1:119:0,119:0:0:119:4248:-382.5,-35.8226,0	1/1:352:0,351:0:0:351:12541:-1128.16,-105.662,0	0/1:253:90,163:90:3232:163:5817:-447.483,0,-214.94	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	1/1:298:0,298:0:0:298:10635:-957.063,-89.7069,0	1/1:160:0,160:0:0:160:5716:-514.559,-48.1648,0	0/1:114:62,52:62:2232:52:1872:-134.442,0,-166.826	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:173:97,76:97:3476:76:2711:-192.155,0,-260.973	0/1:157:59,98:59:2116:98:3501:-268.04,0,-143.447	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:130:61,69:61:2176:69:2442:-180.901,0,-156.973	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:170:0,170:0:0:170:6085:-547.751,-51.1751,0	1/1:40:0,40:0:0:40:1425:-128.545,-12.0412,0	0/1:42:25,17:25:900:17:600:-41.6859,0,-68.6778	1/1:159:0,159:0:0:159:5684:-511.679,-47.8638,0	0/1:61:35,26:35:1256:26:909:-63.7606,0,-94.9825	0/1:168:79,88:79:2836:88:3152:-233.273,0,-204.846	1/1:112:0,112:0:0:112:4024:-362.347,-33.7154,0	0/1:126:60,66:60:2152:66:2368:-175.448,0,-156.017	1/1:153:1,152:1:36:152:5423:-484.602,-42.4593,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:98:50,48:50:1777:48:1724:-125.944,0,-130.71	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:140:0,140:0:0:140:5016:-451.586,-42.1442,0	1/1:80:1,79:1:36:79:2832:-251.52,-20.4841,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:105:0,104:0:0:104:3710:-333.743,-31.3071,0	0/1:97:58,39:58:2080:39:1400:-97.0993,0,-158.27	.:.:.:.:.:.:.:.	1/1:77:0,77:0:0:77:2737:-246.572,-23.1793,0	0/1:191:94,97:94:3361:97:3450:-253.205,0,-245.208	1/1:79:4,75:4:129:75:2663:-227.989,-11.8537,0	1/1:85:0,85:0:0:85:3025:-272.48,-25.5876,0	0/1:139:77,62:77:2752:62:2216:-157.862,0,-206.079	1/1:158:0,157:0:0:157:5632:-506.64,-47.2617,0	1/1:33:0,33:0:0:33:1170:-105.606,-9.93399,0	1/1:37:0,37:0:0:37:1308:-118.022,-11.1381,0	0/1:33:18,15:18:648:15:532:-38.2791,0,-48.7179	0/1:40:15,25:15:540:25:896:-68.9192,0,-36.8953	0/1:138:43,95:43:1529:95:3381:-262.965,0,-96.359	0/1:63:32,31:32:1148:31:1104:-80.7057,0,-84.6649	1/1:189:0,189:0:0:189:6721:-604.969,-56.8947,0	0/1:188:89,99:89:3196:99:3540:-262.216,0,-231.269	1/1:103:0,103:0:0:103:3680:-331.404,-31.0061,0	1/1:57:1,56:1:36:56:1997:-176.405,-13.5604,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:109:0,109:0:0:109:3904:-351.553,-32.8123,0	0/1:128:71,57:71:2540:57:2044:-145.7,0,-190.319	0/1:235:112,123:112:4024:123:4373:-323.003,0,-291.605	0/1:41:23,18:23:828:18:644:-45.9484,0,-62.5019	0/1:76:49,27:49:1764:27:946:-62.5737,0,-136.165	0/1:43:21,22:21:756:22:788:-58.3005,0,-55.4229	0/1:109:59,50:59:2103:50:1788:-128.39,0,-156.727	0/1:21:16,5:16:576:5:176:-9.86339,0,-45.8534	1/1:56:0,56:0:0:56:1992:-179.554,-16.8577,0	1/1:60:0,60:0:0:60:2147:-193.497,-18.0618,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:97:54,43:54:1936:43:1527:-108.522,0,-145.316	0/1:63:47,16:47:1684:16:572:-32.8485,0,-132.882	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:60:0,60:0:0:60:2142:-193.048,-18.0618,0
chr01	2182057	.	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chr01	2188953	.	C	G	68318.4	PASS	AB=0.459152;ABP=53.9246;AC=148;AF=0.787234;AN=188;AO=5407;CIGAR=1X;DP=7318;DPB=7318;DPRA=0;EPP=11735.5;EPPR=4139.67;GTI=3;LEN=1;MEANALT=1.06383;MQM=27.3259;MQMR=28.6457;NS=94;NUMALT=1;ODDS=0.525905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192363;QR=67832;RO=1905;RPL=0;RPP=11744.2;RPPR=4139.67;RPR=5407;RUN=1;SAF=5406;SAP=11735.5;SAR=1;SRF=1905;SRP=4139.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1275:-85.667,-10.8371,0	0/1:92:50,42:50:1792:42:1500:-72.0258,0,-99.1122	1/1:114:0,114:0:0:114:4052:-269.144,-34.3174,0	1/1:126:0,126:0:0:126:4465:-298.056,-37.9298,0	1/1:48:0,47:0:0:47:1654:-111.1,-14.1484,0	1/1:52:0,52:0:0:52:1856:-123.958,-15.6536,0	1/1:124:0,124:0:0:124:4421:-294.952,-37.3277,0	1/1:48:1,47:1:36:47:1676:-108.041,-11.6284,0	0/1:57:29,28:29:1028:28:1004:-49.1661,0,-52.5761	1/1:65:0,65:0:0:65:2301:-154.096,-19.567,0	1/1:105:0,104:0:0:104:3686:-248.239,-31.3071,0	0/1:91:50,41:50:1750:41:1447:-69.7216,0,-98.3279	0/1:97:53,44:53:1888:44:1568:-75.6327,0,-104.821	0/1:129:71,58:71:2540:58:2071:-97.7892,0,-140.499	0/1:52:27,25:27:964:25:886:-43.6741,0,-52.0177	1/1:61:0,61:0:0:61:2171:-144.587,-18.3628,0	1/1:90:0,89:0:0:89:3184:-213.388,-26.7917,0	0/1:44:27,17:27:972:17:608:-27.4818,0,-55.1961	1/1:59:0,59:0:0:59:2104:-141.756,-17.7608,0	1/1:134:0,134:0:0:134:4764:-318.685,-40.338,0	0/1:98:59,39:59:2108:39:1396:-64.3024,0,-120.115	0/1:93:73,19:73:2608:19:667:-16.9986,0,-151.763	1/1:70:0,70:0:0:70:2504:-165.076,-21.0721,0	0/1:56:26,30:26:928:30:1076:-56.1106,0,-47.1874	1/1:72:0,72:0:0:72:2515:-168.678,-21.6742,0	1/1:171:0,171:0:0:171:6104:-406.236,-51.4761,0	0/1:185:105,80:105:3734:80:2843:-133.764,0,-207.512	1/1:42:0,41:0:0:41:1442:-97.662,-12.3422,0	1/1:143:0,143:0:0:143:5081:-343.307,-43.0473,0	1/1:97:0,97:0:0:97:3455:-228.447,-29.1999,0	0/1:105:55,50:55:1968:50:1788:-88.1243,0,-106.927	1/1:4:0,4:0:0:4:144:-9.79982,-1.20412,0	1/1:22:0,22:0:0:22:780:-52.5234,-6.62266,0	1/1:1:0,1:0:0:1:36:-2.6486,-0.30103,0	0/1:5:4,1:4:144:1:36:-1.14345,0,-8.93285	1/1:10:0,10:0:0:10:360:-24.1023,-3.0103,0	0/1:189:96,93:96:3427:93:3332:-164.078,0,-178.537	0/1:141:68,73:68:2428:73:2601:-129.824,0,-128.817	1/1:97:0,97:0:0:97:3452:-230.955,-29.1999,0	0/1:3:2,1:2:68:1:36:-1.74551,0,-4.20064	0/1:78:45,33:45:1603:33:1179:-55.1379,0,-88.9789	1/1:34:0,34:0:0:34:1216:-80.7174,-10.235,0	1/1:102:0,102:0:0:102:3640:-244.057,-30.7051,0	1/1:65:0,65:0:0:65:2299:-154.153,-19.567,0	0/1:59:37,22:37:1324:22:784:-35.5185,0,-76.0553	1/1:128:0,128:0:0:128:4522:-301.706,-38.5318,0	0/1:59:35,24:35:1244:24:856:-40.2062,0,-68.7659	0/1:118:49,69:49:1756:69:2467:-129.621,0,-88.9569	1/1:47:0,47:0:0:47:1650:-111.106,-14.1484,0	0/1:75:30,45:30:1064:45:1604:-84.4151,0,-53.3933	1/1:150:0,150:0:0:150:5351:-357.145,-45.1545,0	1/1:7:0,7:0:0:7:248:-15.5472,-2.10721,0	0/1:79:48,31:48:1692:31:1108:-50.1759,0,-97.0998	1/1:50:0,49:0:0:49:1748:-117.088,-14.7505,0	1/1:35:0,35:0:0:35:1241:-83.9057,-10.5361,0	1/1:86:0,86:0:0:86:3018:-203.103,-25.8886,0	1/1:36:0,36:0:0:36:1272:-84.8994,-10.8371,0	1/1:6:0,6:0:0:6:216:-14.5673,-1.80618,0	1/1:8:0,8:0:0:8:288:-19.0032,-2.40824,0	1/1:97:0,97:0:0:97:3456:-229.872,-29.1999,0	0/1:146:77,69:77:2742:69:2476:-122.236,0,-150.217	0/1:13:11,2:11:396:2:72:-1.11895,0,-24.2974	1/1:119:0,119:0:0:119:4248:-282.602,-35.8226,0	0/1:99:57,42:57:2024:42:1487:-69.7248,0,-111.67	1/1:63:0,63:0:0:63:2237:-150.006,-18.9649,0	1/1:38:1,37:1:36:37:1323:-85.2532,-8.61806,0	0/1:102:48,54:48:1708:54:1914:-97.0779,0,-89.4997	1/1:32:1,31:1:36:31:1108:-71.7469,-6.81188,0	1/1:37:0,37:0:0:37:1324:-89.1982,-11.1381,0	1/1:33:0,33:0:0:33:1160:-77.5028,-9.93399,0	0/1:82:49,33:49:1723:33:1180:-53.9592,0,-94.8492	0/1:28:14,14:14:500:14:480:-24.397,0,-27.1541	0/1:115:57,58:57:2024:58:2057:-104.788,0,-106.343	0/1:50:36,14:36:1271:14:504:-18.5857,0,-75.4865	1/1:142:0,142:0:0:142:5043:-337.599,-42.7463,0	0/1:127:64,63:64:2280:63:2252:-111.553,0,-121.392	1/1:86:0,86:0:0:86:3076:-206.383,-25.8886,0	1/1:86:2,84:2:68:84:2984:-194.662,-20.621,0	1/1:6:0,6:0:0:6:208:-14.3607,-1.80618,0	1/1:73:0,73:0:0:73:2583:-172.157,-21.9752,0	0/1:57:36,21:36:1292:21:752:-33.8813,0,-72.599	0/1:126:67,59:67:2384:59:2100:-101.604,0,-130.594	0/1:97:49,48:49:1747:48:1716:-84.5184,0,-93.0581	0/1:54:28,26:28:995:26:936:-45.9052,0,-53.5826	0/1:75:39,36:39:1374:36:1272:-62.8208,0,-75.6853	0/1:151:81,70:81:2879:70:2475:-120.684,0,-157.09	0/1:36:15,21:15:540:21:752:-39.2607,0,-27.5296	1/1:87:0,87:0:0:87:3104:-205.21,-26.1896,0	1/1:81:0,81:0:0:81:2894:-192.841,-24.3834,0	1/1:110:0,110:0:0:110:3921:-261.279,-33.1133,0	0/1:188:92,96:92:3291:96:3444:-170.044,0,-174.475	0/1:62:40,22:40:1420:22:792:-34.0433,0,-80.7056	1/1:57:1,56:1:36:56:1969:-129.731,-14.2559,0	1/1:113:0,113:0:0:113:4016:-268.323,-34.0164,0
chr01	2199852	.	ACATT	ACATC,GCATC	406961	PASS	AB=0.531637,0.464961;ABP=66.9002,81.3786;AC=147,41;AF=0.781915,0.218085;AN=188;AO=12977,3450;CIGAR=4M1X,1X3M1X;DP=16502;DPB=16502.6;DPRA=0,1.46832;EPP=28182.2,7494.59;EPPR=20.3821;GTI=1;LEN=1,5;MEANALT=2.23404,2.70909;MQM=55.3764,54.5003;MQMR=55.875;NS=94;NUMALT=2;ODDS=4.07921;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=0;PRO=1;QA=461287,119743;QR=273;RO=8;RPL=2741,150;RPP=9402.91,6248.35;RPPR=4.09604;RPR=10236,3300;RUN=1,1;SAF=2741,150;SAP=9402.91,6248.35;SAR=10236,3300;SRF=3;SRP=4.09604;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:97:0,97,0:0:0:97,0:3453,0:-310.974,-29.1999,0,-310.974,-29.1999,-310.974	1/2:228:0,119,109:0:0:119,109:4253,3790:-654.939,-308.167,-272.344,-347.124,0,-314.312	1/1:289:0,284,0:0:0:284,0:10114,0:-909.798,-85.4925,0,-909.798,-85.4925,-909.798	1/1:477:0,474,0:0:0:474,0:16786,0:-1484.85,-142.688,0,-1484.85,-142.688,-1484.85	1/1:161:0,160,1:0:0:160,1:5700,36:-512.759,-48.1648,0,-509.823,-44.8693,-509.522	1/1:57:0,56,0:0:0:56,0:1990,0:-179.092,-16.8577,0,-179.092,-16.8577,-179.092	1/1:301:0,299,1:0:0:299,1:10658,36:-937.939,-90.008,0,-935.001,-87.0706,-934.7	1/1:287:0,284,2:0:0:284,2:10123,72:-910.647,-85.4925,0,-904.912,-79.7619,-904.31	1/2:179:0,86,93:0:0:86,93:3056,3216:-510.529,-261.499,-235.611,-249.381,0,-221.385	1/1:174:0,173,0:0:0:173,0:6181,0:-544.708,-52.0782,0,-544.708,-52.0782,-544.708	1/1:141:1,140,0:1:36:140,0:4998,0:-427.25,-38.8587,0,-427.551,-42.1442,-430.477	1/2:76:0,39,37:0:0:39,37:1375,1285:-216.422,-104.464,-92.7234,-112.308,0,-101.17	1/2:73:0,37,35:0:0:37,35:1320,1235:-207.69,-100.079,-88.9413,-107.625,0,-97.0886	1/2:42:0,22,20:0:0:22,20:771,667:-116.417,-53.6689,-47.0463,-63.0876,0,-57.067	1/2:107:0,69,38:0:0:69,38:2432,1338:-301.588,-109.049,-88.2776,-192.888,0,-181.448	1/1:62:0,61,0:0:0:61,0:2138,0:-192.394,-18.3628,0,-192.394,-18.3628,-192.394	1/1:98:0,98,0:0:0:98,0:3478,0:-313.233,-29.5009,0,-313.233,-29.5009,-313.233	1/2:69:0,39,30:0:0:39,30:1369,1053:-197.374,-85.958,-74.2178,-111.766,0,-102.735	1/1:45:0,44,0:0:0:44,0:1533,0:-137.899,-13.2453,0,-137.899,-13.2453,-137.899	1/1:470:2,461,2:2:72:461,2:16337,71:-1431.6,-132.89,0,-1427.27,-133.85,-1432.55	1/2:279:0,137,142:0:0:137,142:4890,4900:-796.195,-397.534,-356.293,-399.011,0,-356.265	1/2:254:0,74,180:0:0:74,180:2639,6242:-658.779,-446.112,-423.836,-213.007,0,-158.821	1/1:214:0,209,3:0:0:209,3:7461,108:-650.099,-62.9153,0,-643.158,-56.0158,-642.255	1/2:110:0,66,44:0:0:66,44:2338,1549:-316.787,-126.33,-106.462,-190.81,0,-177.565	1/1:118:0,118,0:0:0:118,0:4204,0:-378.543,-35.5215,0,-378.543,-35.5215,-378.543	1/1:626:0,623,1:0:0:623,1:22148,36:-1968.92,-187.542,0,-1967.43,-186.104,-1967.13	1/2:515:0,238,276:0:0:238,276:8496,9567:-1469.49,-776.872,-705.227,-692.752,0,-609.668	1/1:39:0,39,0:0:0:39,0:1374,0:-123.174,-11.7402,0,-123.174,-11.7402,-123.174	1/1:548:0,546,1:0:0:546,1:19393,29:-1723.04,-164.362,0,-1720.73,-162.046,-1720.43	1/1:194:0,190,1:0:0:190,1:6787,36:-610.571,-57.1957,0,-607.635,-54.2507,-607.334	1/2:237:0,157,79:0:0:157,79:5535,2753:-664.947,-222.937,-175.675,-441.997,0,-418.216	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:25:0,25,0:0:0:25,0:881,0:-79.6012,-7.52575,0,-79.6012,-7.52575,-79.6012	1/2:9:0,3,6:0:0:3,6:108,204:-25.04,-16.217,-15.3139,-9.17208,0,-7.3659	1/2:15:0,3,11:0:0:3,11:108,383:-39.94,-31.1256,-30.2225,-8.81233,0,-5.501	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:367:0,197,165:0:0:197,165:6958,5746:-915.729,-362.532,-303.229,-553.22,0,-503.551	1/2:223:0,119,104:0:0:119,104:4226,3533:-630.184,-285.835,-250.012,-344.632,0,-313.325	1/1:47:1,46,0:1:25:46,0:1641,0:-145.478,-11.6485,0,-145.779,-13.8474,-147.725	1/2:6:0,5,1:0:0:5,1:176,36:-17.617,-3.29553,-1.79038,-14.6799,0,-14.3788	1/2:248:0,99,148:0:0:99,148:3526,5083:-698.789,-411.393,-381.591,-287.386,0,-242.834	1/1:33:0,33,0:0:0:33,0:1176,0:-105.656,-9.93399,0,-105.656,-9.93399,-105.656	1/1:346:0,344,0:0:0:344,0:12259,0:-1102.84,-103.554,0,-1102.84,-103.554,-1102.84	1/1:160:0,159,0:0:0:159,0:5597,0:-492.072,-47.8638,0,-492.072,-47.8638,-492.072	1/2:117:0,74,43:0:0:74,43:2631,1443:-325.258,-117.05,-94.7733,-208.547,0,-195.603	1/1:312:0,312,0:0:0:312,0:11087,0:-984.275,-93.9214,0,-984.275,-93.9214,-984.275	1/2:234:0,123,109:0:0:123,109:4364,3772:-661.817,-306.329,-269.302,-355.567,0,-322.755	1/2:356:0,212,140:0:0:212,140:7578,4824:-996.498,-390.94,-327.122,-605.617,0,-563.473	1/1:197:0,196,0:0:0:196,0:6991,0:-615.355,-59.0019,0,-615.355,-59.0019,-615.355	1/2:245:0,136,109:0:0:136,109:4850,3843:-700.351,-312.29,-271.35,-388.413,0,-355.6	1/1:390:0,387,0:0:0:387,0:13821,0:-1226.61,-116.499,0,-1226.61,-116.499,-1226.61	1/1:28:0,28,0:0:0:28,0:1000,0:-88.8714,-8.42884,0,-88.8714,-8.42884,-88.8714	1/2:158:0,73,85:0:0:73,85:2569,2965:-450.25,-241.118,-219.143,-209.482,0,-183.895	1/1:94:0,94,0:0:0:94,0:3336,0:-293.13,-28.2968,0,-293.13,-28.2968,-293.13	1/1:32:0,32,0:0:0:32,0:1140,0:-102.909,-9.63296,0,-102.909,-9.63296,-102.909	1/1:207:1,205,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chr01	2199888	.	TCT	TTT	57233.9	PASS	AB=0.512481;ABP=11.7912;AC=41;AF=0.218085;AN=188;AO=3341;CIGAR=1M1X1M;DP=14013;DPB=14010;DPRA=1.28709;EPP=7188.58;EPPR=22869.3;GTI=1;LEN=1;MEANALT=1.31915;MQM=56.1078;MQMR=59.9558;NS=94;NUMALT=1;ODDS=0.0100336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119592;QR=377283;RO=10646;RPL=3333;RPP=7188.58;RPPR=22869.3;RPR=8;RUN=1;SAF=0;SAP=7257.9;SAR=3341;SRF=0;SRP=23120.5;SRR=10646;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:100:99,0:99:3510:0:0:0,-29.802,-315.753	0/1:235:122,113:122:4332:113:4048:-293.132,0,-319.314	0/0:298:298,0:298:10546:0:0:0,-89.7069,-949.057	0/0:358:358,0:358:12624:0:0:0,-107.769,-1136	0/0:169:167,1:167:5931:1:36:0,-47.3362,-530.305	0/0:58:58,0:58:2055:0:0:0,-17.4597,-185.22	0/0:208:207,0:207:7358:0:0:0,-62.3132,-661.953	0/0:302:299,2:299:10605:2:72:0,-84.2774,-947.626	0/1:184:88,96:88:3117:96:3448:-254.849,0,-225.368	0/0:118:118,0:118:4163:0:0:0,-35.5215,-374.855	0/0:43:43,0:43:1541:0:0:0,-12.9443,-138.98	0/1:78:39,38:39:1378:38:1368:-99.5015,0,-100.779	0/1:76:38,37:38:1365:37:1327:-96.0685,0,-100.214	0/1:42:22,20:22:772:20:695:-49.8594,0,-57.1571	0/1:77:37,39:37:1322:39:1404:-103.16,0,-96.0435	0/0:67:67,0:67:2385:0:0:0,-20.169,-214.902	0/0:100:100,0:100:3572:0:0:0,-30.103,-321.688	0/1:69:39,30:39:1383:30:1080:-76.6465,0,-103.997	0/0:45:45,0:45:1573:0:0:0,-13.5463,-141.858	0/0:301:301,0:301:10664:0:0:0,-90.61,-959.578	0/1:287:140,147:140:4963:147:5269:-386.902,0,-360.428	0/1:192:56,135:56:1994:135:4827:-376.257,0,-121.879	0/0:123:123,0:123:4382:0:0:0,-37.0267,-394.552	0/1:113:67,46:67:2386:46:1633:-113.108,0,-180.981	0/0:121:120,0:120:4223:0:0:0,-36.1236,-379.893	0/0:505:505,0:505:17895:0:0:0,-152.02,-1610.17	0/1:525:241,280:241:8564:280:10006:-742.284,0,-613.477	0/0:38:38,0:38:1331:0:0:0,-11.4391,-120.084	0/0:394:393,1:393:13965:1:36:0,-115.009,-1253.03	0/0:199:198,1:198:7023:1:36:0,-56.3084,-628.539	0/1:191:113,78:113:3991:78:2779:-192.172,0,-301.887	0/0:7:7,0:7:250:0:0:0,-2.10721,-22.8467	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1945	0/1:9:3,3:3:108:3:108:-7.91855,0,-7.92131	0/1:17:4,13:4:144:13:468:-37.3312,0,-8.19611	0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3242	0/1:196:106,89:106:3779:89:3194:-228.335,0,-281.249	0/1:237:128,109:128:4519:109:3875:-276.612,0,-335.502	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.932	0/1:6:5,1:5:168:1:36:-1.79038,0,-13.6444	0/1:258:106,152:106:3757:152:5467:-412.633,0,-260.665	0/0:33:32,0:32:1146:0:0:0,-9.63296,-103.09	0/0:354:354,0:354:12576:0:0:0,-106.565,-1131.67	0/0:107:107,0:107:3809:0:0:0,-32.2102,-343.008	0/1:88:46,42:46:1640:42:1497:-108.002,0,-121.398	0/0:230:230,0:230:8083:0:0:0,-69.2369,-727.499	0/1:240:128,111:128:4533:111:3953:-283.282,0,-335.824	0/1:305:156,149:156:5551:149:5352:-388.713,0,-407.897	0/0:135:135,0:135:4783:0:0:0,-40.639,-430.627	0/1:219:106,113:106:3757:113:4023:-295.305,0,-272.408	0/0:286:286,0:286:10144:0:0:0,-86.0946,-912.896	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:163:76,87:76:2717:87:3124:-231.919,0,-195.706	0/0:36:36,0:36:1260:0:0:0,-10.8371,-113.701	0/0:32:31,0:31:1110:0:0:0,-9.33193,-99.8517	0/0:221:221,0:221:7753:0:0:0,-66.5276,-697.819	0/0:79:79,0:79:2804:0:0:0,-23.7814,-252.6	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:28:28,0:28:983:0:0:0,-8.42884,-88.7824	0/0:65:65,0:65:2290:0:0:0,-19.5669,-206.362	0/1:119:57,62:57:2042:62:2224:-164.197,0,-148.229	0/1:11:7,4:7:244:4:144:-9.99269,0,-18.9875	0/0:336:336,0:336:11914:0:0:0,-101.146,-1072.12	0/1:337:163,173:163:5764:173:6192:-455.271,0,-417.413	0/0:126:117,9:117:4171:9:324:0,-8.43795,-346.081	0/0:191:191,0:191:6726:0:0:0,-57.4967,-605.418	0/1:360:148,211:148:5238:211:7580:-572.686,0,-363.213	0/0:146:146,0:146:5175:0:0:0,-43.9504,-465.882	0/0:22:22,0:22:782:0:0:0,-6.62266,-70.703	0/0:132:132,0:132:4675:0:0:0,-39.736,-420.913	0/1:109:55,54:55:1944:54:1944:-142.315,0,-142.421	0/1:25:11,14:11:385:14:504:-38.1394,0,-27.4589	0/1:141:83,58:83:2922:58:2084:-145.264,0,-220.769	0/1:82:36,46:36:1281:46:1656:-124.604,0,-90.9083	0/0:203:203,0:203:7204:0:0:0,-61.1091,-648.419	0/1:291:143,147:143:5092:147:5239:-382.95,0,-370.874	0/0:151:151,0:151:5345:0:0:0,-45.4555,-481.164	0/0:196:195,0:195:6860:0:0:0,-58.7008,-617.111	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.775	0/0:206:205,1:205:7235:1:36:0,-58.4156,-647.527	0/1:276:131,145:131:4625:145:5196:-384.136,0,-333.331	0/1:313:166,147:166:5849:147:5236:-375.908,0,-432.303	0/1:107:46,61:46:1639:61:2188:-164.231,0,-115.588	0/1:60:27,33:27:968:33:1184:-88.6376,0,-69.3758	0/1:104:51,52:51:1802:52:1860:-135.722,0,-131.094	0/1:170:80,90:80:2814:90:3221:-238.395,0,-202.323	0/1:36:24,12:24:849:12:432:-28.3732,0,-65.8907	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.025	0/0:73:73,0:73:2589:0:0:0,-21.9752,-233.257	0/0:52:51,0:51:1817:0:0:0,-15.3525,-163.45	0/1:60:29,31:29:1044:31:1112:-82.2854,0,-76.2048	0/1:82:24,58:24:841:58:2075:-161.884,0,-51.3229	0/0:145:145,0:145:5159:0:0:0,-43.6493,-464.45	0/0:132:132,0:132:4700:0:0:0,-39.736,-423.161
chr01	2269045	.	A	G	179818	PASS	AB=0.63586;ABP=639.655;AC=147;AF=0.781915;AN=188;AO=8440;CIGAR=1X;DP=9897;DPB=9897;DPRA=0;EPP=18321.6;EPPR=3158.16;GTI=5;LEN=1;MEANALT=1.04255;MQM=59.9723;MQMR=59.9773;NS=94;NUMALT=1;ODDS=1.84831;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=298858;QR=51867;RO=1453;RPL=8439;RPP=18321.6;RPPR=3158.16;RPR=1;RUN=1;SAF=8440;SAP=18330.2;SAR=0;SRF=1453;SRP=3158.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1010:-91.207,-8.72987,0	0/1:90:29,61:29:1044:61:2159:-167.484,0,-67.1821	1/1:174:0,174:0:0:174:6174:-555.764,-52.3792,0	1/1:265:1,264:1:36:264:9365:-839.223,-76.1747,0	1/1:103:0,103:0:0:103:3650:-328.704,-31.0061,0	1/1:87:0,87:0:0:87:3084:-277.789,-26.1896,0	1/1:290:0,290:0:0:290:10291:-926.121,-87.2987,0	1/1:160:0,160:0:0:160:5687:-511.94,-48.1648,0	0/1:65:13,52:13:468:52:1827:-145.141,0,-22.8927	1/1:169:0,169:0:0:169:5993:-539.479,-50.8741,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:48:22,26:22:774:26:936:-70.11,0,-55.5308	0/1:66:38,28:38:1351:28:983:-68.9144,0,-101.915	1/1:88:0,88:0:0:88:3134:-282.285,-26.4906,0	0/1:56:21,35:21:744:35:1231:-94.2349,0,-50.4266	1/1:54:0,54:0:0:54:1886:-170.016,-16.2556,0	1/1:77:0,77:0:0:77:2728:-245.762,-23.1793,0	0/1:60:28,32:28:1004:32:1117:-82.7734,0,-72.6141	1/1:38:0,38:0:0:38:1355:-122.25,-11.4391,0	1/1:297:0,297:0:0:297:10581:-952.207,-89.4059,0	0/1:180:44,136:44:1572:136:4783:-376.429,0,-87.5862	0/1:168:75,93:75:2671:93:3271:-244.036,0,-190.063	1/1:27:0,27:0:0:27:949:-85.7228,-8.12781,0	0/1:110:14,96:14:496:96:3403:-273.372,0,-11.861	1/1:127:0,127:0:0:127:4517:-406.699,-38.2308,0	1/1:375:0,375:0:0:375:13232:-1190.69,-112.886,0	0/1:117:36,81:36:1288:81:2871:-223.405,0,-81.0029	1/1:32:0,32:0:0:32:1109:-100.115,-9.63296,0	1/1:289:0,289:0:0:289:10217:-919.459,-86.9977,0	1/1:146:1,145:1:36:145:5127:-457.975,-40.3521,0	0/1:84:14,70:14:504:70:2483:-198.437,0,-20.4116	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:20:0,20:0:0:20:692:-62.5996,-6.0206,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:4,5:4:135:5:180:-13.465,0,-9.77324	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:137:68,68:68:2418:68:2414:-176.344,0,-176.692	0/1:197:60,137:60:2130:137:4862:-378.433,0,-132.664	1/1:63:0,63:0:0:63:2238:-201.683,-18.9649,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:120:34,86:34:1207:86:3063:-239.776,0,-72.8117	1/1:50:0,50:0:0:50:1742:-157.063,-15.0515,0	1/1:215:0,214:0:0:214:7524:-676.847,-64.4204,0	1/1:54:0,54:0:0:54:1915:-172.627,-16.2556,0	0/1:59:34,25:34:1220:25:854:-59.4084,0,-92.346	1/1:131:4,127:4:144:127:4494:-391.317,-26.1213,0	0/1:105:47,58:47:1683:58:2040:-152.263,0,-120.148	0/1:173:68,105:68:2427:105:3725:-283.373,0,-166.607	1/1:165:0,165:0:0:165:5903:-531.379,-49.67,0	0/1:117:46,71:46:1648:71:2539:-193.54,0,-113.388	1/1:298:0,298:0:0:298:10581:-952.206,-89.7069,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:141:40,100:40:1428:100:3556:-277.744,0,-86.3136	1/1:82:0,82:0:0:82:2900:-261.236,-24.6845,0	1/1:15:0,15:0:0:15:522:-47.3073,-4.51545,0	1/1:119:0,119:0:0:119:4234:-381.24,-35.8226,0	1/1:24:0,24:0:0:24:839:-75.8273,-7.22472,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:97:1,96:1:32:96:3407:-303.646,-26.0006,0	0/1:111:66,45:66:2352:45:1580:-109.073,0,-178.525	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	1/1:223:1,222:1:36:222:7930:-710.122,-63.5314,0	0/1:138:53,85:53:1904:85:3015:-230.037,0,-130.096	1/1:102:1,101:1:36:101:3555:-316.556,-27.1068,0	1/1:104:0,104:0:0:104:3678:-331.223,-31.3071,0	0/1:144:36,108:36:1279:108:3815:-300.198,0,-72.0641	1/1:126:0,126:0:0:126:4487:-403.998,-37.9298,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:138:0,138:0:0:138:4902:-441.145,-41.5421,0	0/1:78:29,49:29:1040:49:1739:-133.314,0,-70.434	0/1:24:7,17:7:252:17:608:-47.7407,0,-15.8042	0/1:164:45,119:45:1595:119:4149:-324.228,0,-94.4706	0/1:52:14,38:14:504:38:1356:-106.687,0,-30.0445	1/1:190:0,190:0:0:190:6730:-605.758,-57.1957,0	0/1:189:69,120:69:2472:120:4246:-325.426,0,-165.839	1/1:141:0,141:0:0:141:4995:-449.7,-42.4452,0	1/1:79:0,79:0:0:79:2775:-249.991,-23.7814,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:123:0,122:0:0:122:4359:-392.125,-36.7257,0	0/1:160:54,106:54:1936:106:3763:-290.705,0,-126.352	0/1:288:87,201:87:3116:201:7096:-552.011,0,-193.97	0/1:87:45,42:45:1599:42:1465:-105.953,0,-118.01	0/1:35:16,19:16:559:19:684:-51.3543,0,-40.1016	0/1:75:35,40:35:1260:40:1388:-102.637,0,-91.1282	0/1:106:53,53:53:1896:53:1834:-133.425,0,-139.009	0/1:43:16,27:16:576:27:968:-74.3622,0,-39.2307	1/1:81:0,81:0:0:81:2837:-255.57,-24.3834,0	1/1:66:0,66:0:0:66:2332:-210.138,-19.868,0	1/1:48:0,48:0:0:48:1701:-153.374,-14.4494,0	0/1:105:44,61:44:1572:61:2180:-164.858,0,-110.163	0/1:41:31,10:31:1099:10:356:-20.039,0,-86.8772	1/1:138:0,138:0:0:138:4861:-437.648,-41.5421,0	1/1:65:0,65:0:0:65:2281:-205.549,-19.567,0
chr01	2291959	.	C	T	81419.2	PASS	AB=0.451526;ABP=55.8511;AC=147;AF=0.781915;AN=188;AO=3882;CIGAR=1X;DP=5327;DPB=5327;DPRA=19.0824;EPP=8423.98;EPPR=3062.61;GTI=3;LEN=1;MEANALT=1.24731;MQM=59.9807;MQMR=59.7019;NS=94;NUMALT=1;ODDS=0.182828;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138798;QR=50377;RO=1409;RPL=0;RPP=8432.67;RPPR=3062.61;RPR=3882;RUN=1;SAF=3881;SAP=8423.98;SAR=1;SRF=1409;SRP=3062.61;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:101:53,48:53:1892:48:1718:-124.501,0,-140.093	1/1:96:1,94:1:36:94:3372:-300.097,-25.3594,0	1/1:81:0,81:0:0:81:2888:-260.157,-24.3834,0	1/1:24:0,23:0:0:23:824:-74.1236,-6.92369,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:71:0,71:0:0:71:2532:-228.113,-21.3731,0	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	0/1:39:23,16:23:820:16:576:-40.4348,0,-62.295	1/1:87:0,87:0:0:87:3104:-279.588,-26.1896,0	1/1:72:0,70:0:0:70:2504:-225.253,-21.0721,0	0/1:58:32,26:32:1144:26:932:-66.7391,0,-85.8089	0/1:59:25,31:25:892:31:1112:-83.174,0,-63.3789	1/1:66:0,66:0:0:66:2348:-211.58,-19.868,0	0/1:52:25,27:25:888:27:968:-71.7838,0,-64.5831	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:57:0,57:0:0:57:2044:-183.803,-17.1587,0	0/1:46:18,28:18:644:28:1000:-76.468,0,-44.4432	1/1:51:0,50:0:0:50:1800:-161.922,-15.0515,0	1/1:89:0,89:0:0:89:3176:-286.042,-26.7917,0	0/1:70:50,20:50:1788:20:716:-43.6956,0,-140.127	0/1:57:50,7:50:1780:7:252:-5.87025,0,-143.28	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:65:31,34:31:1108:34:1212:-89.8194,0,-80.461	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:90:0,89:0:0:89:3160:-284.414,-26.7917,0	0/1:125:68,57:68:2440:57:2033:-145.612,0,-182.225	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:126:0,126:0:0:126:4520:-406.967,-37.9298,0	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	0/1:62:42,20:42:1485:20:708:-45.3817,0,-115.114	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:9:0,8:0:0:8:288:-25.9076,-2.40824,0	0/1:124:58,65:58:2084:65:2328:-172.393,0,-150.444	0/1:88:53,34:53:1892:34:1200:-81.9019,0,-144.129	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:71:33,38:33:1175:38:1364:-101.688,0,-84.5245	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:49:23,25:23:828:25:900:-66.5117,0,-60.0267	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	0/1:74:40,34:40:1428:34:1220:-87.8306,0,-106.478	0/1:90:44,46:44:1580:46:1644:-121.156,0,-115.363	1/1:83:0,83:0:0:83:2964:-266.994,-24.9855,0	0/1:106:67,39:67:2385:39:1384:-92.9497,0,-182.997	1/1:56:0,56:0:0:56:1989:-179.282,-16.8577,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:65:35,30:35:1248:30:1076:-77.5859,0,-93.0564	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:44:1,43:1:32:43:1524:-134.254,-10.046,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:27:0,27:0:0:27:956:-86.3539,-8.12781,0	0/1:96:60,34:60:2160:34:1210:-80.5495,0,-166.001	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	0/1:78:43,35:43:1544:35:1256:-89.8649,0,-115.77	1/1:64:5,59:5:180:59:2112:-173.797,-2.71386,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	0/1:66:34,32:34:1220:32:1152:-84.1222,0,-90.192	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	1/1:35:0,34:0:0:34:1220:-109.747,-10.235,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:55:26,28:26:936:28:1008:-74.4209,0,-67.944	0/1:10:7,3:7:252:3:104:-6.69251,0,-19.948	0/1:52:37,15:37:1312:15:524:-31.8361,0,-102.725	0/1:69:23,43:23:828:43:1548:-119.385,0,-54.5987	1/1:65:0,64:0:0:64:2280:-205.098,-19.2659,0	0/1:81:36,45:36:1296:45:1620:-121.707,0,-92.5572	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:66:0,66:0:0:66:2357:-212.387,-19.868,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:65:0,64:0:0:64:2296:-206.541,-19.2659,0	0/1:80:43,35:43:1528:35:1252:-89.1639,0,-113.975	0/1:107:59,48:59:2100:48:1704:-121.435,0,-157.057	0/1:73:26,45:26:932:45:1604:-122.917,0,-62.466	0/1:48:29,19:29:1040:19:680:-47.0797,0,-79.4649	0/1:75:39,36:39:1396:36:1280:-92.926,0,-103.353	0/1:79:40,36:40:1432:36:1288:-93.0287,0,-105.981	0/1:28:15,13:15:536:13:464:-33.6687,0,-40.146	1/1:74:0,73:0:0:73:2616:-235.328,-21.9752,0	1/1:52:0,50:0:0:50:1788:-160.843,-15.0515,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:117:63,52:63:2256:52:1847:-131.531,0,-168.323	0/1:61:46,15:46:1644:15:540:-30.5737,0,-129.848	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	1/1:75:0,73:0:0:73:2603:-234.158,-21.9752,0
chr01	2292042	.	G	T	13382.4	PASS	AB=0.49484;ABP=3.45849;AC=37;AF=0.198925;AN=186;AO=965;CIGAR=1X;DP=4361;DPB=4361;DPRA=1.39855;EPP=2098.48;EPPR=7189.54;GTI=0;LEN=1;MEANALT=1.02439;MQM=59.7782;MQMR=59.9228;NS=93;NUMALT=1;ODDS=1.31035;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31726;QR=119704;RO=3393;RPL=0;RPP=2098.48;RPPR=7189.54;RPR=965;RUN=1;SAF=0;SAP=2098.48;SAR=965;SRF=0;SRP=7370.82;SRR=3393;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/1:40:19,21:19:680:21:726:-53.6148,0,-49.4798	0/0:58:58,0:58:2019:0:0:0,-17.4597,-181.707	0/0:116:115,1:115:4103:1:36:0,-31.3212,-365.846	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:74:74,0:74:2618:0:0:0,-22.2762,-235.776	0/1:28:19,9:19:671:9:290:-17.9832,0,-52.287	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:50:50,0:50:1727:0:0:0,-15.0515,-155.706	0/1:53:31,22:31:1059:22:773:-53.9267,0,-79.6583	0/1:56:27,29:27:972:29:972:-70.9211,0,-70.9402	0/0:28:28,0:28:983:0:0:0,-8.42884,-88.7825	0/1:45:24,21:24:845:21:729:-52.381,0,-62.8207	0/0:27:27,0:27:942:0:0:0,-8.12781,-85.0923	0/0:29:29,0:29:1018:0:0:0,-8.72987,-91.9304	0/1:17:8,9:8:280:9:290:-21.2946,0,-20.4218	0/0:29:28,0:28:935:0:0:0,-8.42884,-84.0922	0/0:103:103,0:103:3630:0:0:0,-31.0061,-326.903	0/1:54:20,34:20:708:34:1081:-81.3148,0,-47.79	0/1:41:17,24:17:580:24:774:-57.6068,0,-40.1771	0/0:60:60,0:60:2119:0:0:0,-18.0618,-190.976	0/1:44:24,20:24:860:20:682:-48.4494,0,-64.4765	0/0:50:50,0:50:1770:0:0:0,-15.0515,-159.582	0/0:86:86,0:86:3060:0:0:0,-25.8886,-275.631	0/1:60:30,30:30:1072:30:956:-68.2631,0,-78.7307	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:94:93,1:93:3299:1:36:0,-24.6985,-292.51	0/0:49:48,0:48:1702:0:0:0,-14.4494,-153.105	0/1:47:19,28:19:684:28:872:-64.6137,0,-47.7419	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.2355	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:91:36,55:36:1280:55:1854:-139.732,0,-88.1095	0/1:77:42,35:42:1508:35:1090:-75.1962,0,-112.835	0/0:43:43,0:43:1476:0:0:0,-12.9443,-133.128	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:170:83,87:83:2967:87:2892:-209.326,0,-216.087	0/0:26:26,0:26:902:0:0:0,-7.82678,-81.4903	0/0:47:47,0:47:1666:0:0:0,-14.1484,-150.226	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/1:29:14,15:14:492:15:525:-38.8482,0,-35.8825	0/0:73:73,0:73:2602:0:0:0,-21.9752,-234.428	0/1:54:33,21:33:1172:21:733:-50.034,0,-89.5319	0/1:69:39,30:39:1383:30:967:-66.5446,0,-103.969	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/1:53:29,24:29:1027:24:833:-59.3278,0,-76.7876	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:120:64,56:64:2300:56:1678:-115.144,0,-171.137	0/0:40:40,0:40:1406:0:0:0,-12.0412,-126.836	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:75:75,0:75:2691:0:0:0,-22.5772,-242.434	0/0:20:20,0:20:688:0:0:0,-6.0206,-62.2375	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:66:34,32:34:1193:32:1095:-78.7516,0,-87.8052	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:96:96,0:96:3402:0:0:0,-28.8989,-306.396	0/1:34:18,16:18:620:16:497:-34.7891,0,-45.8848	0/0:37:34,3:34:1207:3:93:0,-2.46153,-100.259	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/1:41:26,15:26:908:15:472:-30.4369,0,-69.6903	0/0:102:101,1:101:3531:1:21:0,-28.6051,-315.898	0/0:39:39,0:39:1330:0:0:0,-11.7402,-119.991	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/1:24:10,13:10:336:13:438:-32.4577,0,-23.2819	0/1:14:10,4:10:351:4:144:-9.0992,0,-27.7123	0/1:44:16,28:16:576:28:906:-68.5783,0,-38.9297	0/1:60:32,28:32:1131:28:944:-67.1987,0,-84.0313	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.893	0/1:103:52,51:52:1840:51:1644:-117.218,0,-134.872	0/0:42:42,0:42:1479:0:0:0,-12.6433,-133.395	0/0:65:65,0:65:2287:0:0:0,-19.5669,-206.09	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.1874	0/0:72:72,0:72:2555:0:0:0,-21.6742,-230.199	0/1:42:21,21:21:744:21:613:-42.8014,0,-54.6411	0/1:60:30,30:30:1080:30:971:-69.5559,0,-79.4515	0/1:31:20,11:20:679:11:392:-26.2881,0,-52.0925	0/1:58:29,29:29:998:29:1014:-74.1077,0,-72.666	0/1:28:13,15:13:464:15:521:-38.7875,0,-33.6663	0/1:58:36,22:36:1256:22:749:-50.1906,0,-95.8796	0/1:12:7,5:7:252:5:165:-11.5612,0,-19.4083	0/0:39:39,0:39:1338:0:0:0,-11.7402,-120.713	0/0:49:49,0:49:1700:0:0:0,-14.7505,-153.09	0/0:51:51,0:51:1788:0:0:0,-15.3525,-161.2	0/1:69:30,39:30:1029:39:1336:-99.7541,0,-72.1405	0/1:41:12,29:12:428:29:886:-67.675,0,-26.5166	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/0:71:71,0:71:2412:0:0:0,-21.3731,-217.329
chr01	2292185	.	G	A	40750.8	PASS	AB=0.556544;ABP=121.62;AC=41;AF=0.218085;AN=188;AO=2391;CIGAR=1X;DP=8634;DPB=8634;DPRA=1.4105;EPP=5195;EPPR=13418.5;GTI=6;LEN=1;MEANALT=1.33333;MQM=47.9749;MQMR=59.9521;NS=94;NUMALT=1;ODDS=0.192683;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85577;QR=221239;RO=6222;RPL=2391;RPP=5195;RPPR=13418.5;RPR=0;RUN=1;SAF=0;SAP=5195;SAR=2391;SRF=0;SRP=13513.9;SRR=6222;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:966:0:0:0,-8.42884,-87.2497	0/1:51:20,31:20:707:31:1116:-82.0759,0,-48.602	0/0:123:123,0:123:4379:0:0:0,-37.0267,-394.286	0/0:244:243,1:243:8645:1:36:0,-69.853,-774.446	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:88:87,0:87:3099:0:0:0,-26.1896,-278.778	0/0:54:54,0:54:1922:0:0:0,-16.2556,-173.256	0/1:123:43,80:43:1536:80:2856:-213.681,0,-101.506	0/0:103:103,0:103:3646:0:0:0,-31.0061,-328.319	0/0:93:93,0:93:3320:0:0:0,-27.9958,-299.019	0/1:100:55,44:55:1947:44:1576:-107.677,0,-145.348	0/1:116:56,59:56:1991:59:2116:-152.989,0,-144.491	0/0:142:142,0:142:5068:0:0:0,-42.7463,-456.267	0/1:123:63,60:63:2213:60:2152:-155.325,0,-162.407	0/0:83:83,0:83:2960:0:0:0,-24.9855,-266.634	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/1:68:42,26:42:1484:26:936:-62.7643,0,-113.384	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/0:109:109,0:109:3857:0:0:0,-32.8123,-347.321	0/1:212:88,123:88:3144:123:4396:-324.824,0,-219.307	0/1:57:8,47:8:284:47:1688:-133.886,0,-8.9886	0/0:81:81,0:81:2894:0:0:0,-24.3834,-260.695	0/1:64:21,43:21:739:43:1532:-117.24,0,-47.5649	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:141:141,0:141:5022:0:0:0,-42.4452,-452.1	0/1:188:81,107:81:2861:107:3836:-285.41,0,-201.133	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/0:188:188,0:188:6667:0:0:0,-56.5936,-600.112	0/0:146:146,0:146:5198:0:0:0,-43.9504,-467.961	0/1:103:52,51:52:1851:51:1812:-131.161,0,-135.863	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:11:0,11:0:0:11:396:-35.393,-3.31133,0	0/1:10:4,6:4:144:6:212:-16.2178,0,-10.3033	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:251:129,121:129:4585:121:4324:-311.195,0,-337.2	0/1:85:39,46:39:1387:46:1648:-119.98,0,-99.5406	0/0:76:76,0:76:2683:0:0:0,-22.8783,-241.717	0/1:7:2,5:2:72:5:180:-14.3306,0,-4.72951	0/1:134:72,62:72:2547:62:2197:-155.426,0,-189.038	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:87:87,0:87:3095:0:0:0,-26.1896,-278.778	0/0:74:74,0:74:2624:0:0:0,-22.2762,-236.409	0/1:72:37,35:37:1311:35:1252:-88.1588,0,-96.6167	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/1:80:27,52:27:964:52:1868:-140.845,0,-62.9396	0/1:155:68,87:68:2431:87:3112:-231.046,0,-172.357	0/0:90:89,0:89:3176:0:0:0,-26.7917,-285.705	0/1:166:84,82:84:3008:82:2944:-212.677,0,-220.98	0/0:93:93,0:93:3312:0:0:0,-27.9958,-298.3	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:96:34,61:34:1220:61:2176:-164.284,0,-81.1493	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.949	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:135:135,0:135:4802:0:0:0,-40.639,-431.781	0/0:18:18,0:18:627:0:0:0,-5.41854,-56.7544	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.966	0/1:130:70,59:70:2466:59:2108:-147.97,0,-182.99	0/1:3:1,2:1:36:2:72:-5.9047,0,-2.69518	0/0:271:271,0:271:9653:0:0:0,-81.5791,-868.569	0/1:170:69,100:69:2456:100:3588:-268.763,0,-170.063	0/0:72:70,2:70:2490:2:72:0,-15.7632,-218.441	0/0:66:65,0:65:2324:0:0:0,-19.5669,-209.06	0/1:224:75,149:75:2671:149:5320:-407.145,0,-173.205	0/0:124:122,0:122:4339:0:0:0,-36.7257,-390.292	0/0:57:57,0:57:2013:0:0:0,-17.1587,-181.441	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.13	0/1:71:32,39:32:1117:39:1404:-104.826,0,-79.462	0/1:30:12,17:12:428:17:608:-45.0942,0,-29.7708	0/1:83:38,45:38:1339:45:1612:-118.493,0,-95.8238	0/1:107:36,71:36:1270:71:2540:-193.742,0,-82.3462	0/0:196:196,0:196:6934:0:0:0,-59.0019,-624.108	0/1:188:76,111:76:2703:111:3968:-297.868,0,-186.862	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/0:97:97,0:97:3439:0:0:0,-29.1999,-309.725	0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9347	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.717	0/1:94:38,56:38:1356:56:2012:-148.861,0,-94.0421	0/1:212:80,130:80:2864:130:4652:-351.727,0,-194.423	0/1:60:34,26:34:1207:26:936:-66.1399,0,-90.8735	0/1:128:64,64:64:2295:64:2288:-166.509,0,-168.279	0/1:68:25,43:25:888:43:1544:-117.559,0,-59.7575	0/1:148:82,65:82:2910:65:2324:-162.957,0,-217.156	0/1:24:11,13:11:380:13:468:-34.7465,0,-27.3073	0/0:104:104,0:104:3703:0:0:0,-31.3071,-333.473	0/0:99:99,0:99:3515:0:0:0,-29.802,-316.561	0/0:78:78,0:78:2767:0:0:0,-23.4803,-249.272	0/1:178:83,95:83:2967:95:3400:-248.315,0,-213.679	0/1:92:27,64:27:938:64:2300:-177.555,0,-56.9802	0/0:116:116,0:116:4136:0:0:0,-34.9195,-372.421	0/0:129:129,0:129:4604:0:0:0,-38.8329,-414.526
chr01	2314897	.	C	T	15618.1	PASS	AB=0.465038;ABP=25.1785;AC=37;AF=0.201087;AN=184;AO=982;CIGAR=1X;DP=5019;DPB=5019;DPRA=1.3031;EPP=2135.4;EPPR=8741.02;GTI=1;LEN=1;MEANALT=1.04444;MQM=60;MQMR=60;NS=92;NUMALT=1;ODDS=4.10631;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34987;QR=143270;RO=4032;RPL=0;RPP=2135.4;RPPR=8732.35;RPR=982;RUN=1;SAF=0;SAP=2135.4;SAR=982;SRF=1;SRP=8749.7;SRR=4031;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:20,0:20:708:0:0:0,-6.0206,-63.7044	0/1:88:49,39:49:1737:39:1385:-98.4562,0,-130.122	0/0:63:63,0:63:2218:0:0:0,-18.9649,-199.882	0/0:126:125,1:125:4417:1:36:0,-34.3315,-394.103	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:85:85,0:85:3002:0:0:0,-25.5875,-270.41	0/1:39:15,24:15:540:24:852:-65.2602,0,-37.1964	0/0:46:46,0:46:1621:0:0:0,-13.8474,-146.177	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/1:36:16,20:16:568:20:720:-54.2917,0,-40.6148	0/1:21:9,12:9:320:12:428:-32.5372,0,-22.8207	0/0:54:54,0:54:1898:0:0:0,-16.2556,-171.097	0/1:32:20,12:20:701:12:423:-28.7721,0,-53.7788	0/0:28:28,0:28:979:0:0:0,-8.42884,-88.422	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/1:26:14,12:14:492:12:424:-30.6696,0,-36.7856	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:98:97,1:97:3447:1:36:0,-25.9027,-306.843	0/1:85:42,43:42:1508:43:1518:-111.323,0,-110.427	0/1:18:7,11:7:248:11:392:-30.2015,0,-17.2457	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:36:23,13:23:828:13:451:-30.0827,0,-64.007	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.7422	0/0:194:194,0:194:6908:0:0:0,-58.3998,-621.789	0/1:77:44,33:44:1567:33:1179:-83.2379,0,-118.142	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/0:138:137,0:137:4895:0:0:0,-41.2411,-440.343	0/0:80:76,3:76:2705:3:108:0,-14.066,-233.618	0/1:70:36,34:36:1275:34:1216:-88.6745,0,-93.9802	.:.:.:.:.:.:.:.	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:127:70,57:70:2508:57:2029:-144.651,0,-187.741	0/1:127:62,65:62:2193:65:2329:-171.638,0,-159.403	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:67:47,19:47:1669:19:676:-40.9404,0,-130.268	0/0:21:21,0:21:738:0:0:0,-6.32163,-66.7414	0/0:116:116,0:116:4118:0:0:0,-34.9195,-370.807	0/0:48:48,0:48:1698:0:0:0,-14.4494,-153.105	0/1:20:12,8:12:424:8:279:-19.4269,0,-32.4758	0/0:94:94,0:94:3350:0:0:0,-28.2968,-301.717	0/1:53:30,23:30:1063:23:828:-58.8895,0,-80.0262	0/1:82:42,40:42:1499:40:1423:-103.682,0,-110.519	0/0:64:63,1:63:2252:1:36:0,-15.6676,-199.345	0/1:68:35,33:35:1239:33:1176:-85.6777,0,-91.3436	0/0:82:81,1:81:2869:1:36:0,-21.0862,-254.849	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:71:44,27:44:1565:27:972:-66.4248,0,-119.767	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	.:.:.:.:.:.:.:.	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:42:42,0:42:1482:0:0:0,-12.6433,-133.673	0/1:77:42,35:42:1496:35:1243:-88.9946,0,-111.755	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:132:55,77:55:1957:77:2722:-205.486,0,-136.668	0/0:56:55,1:55:1955:1:36:0,-13.2594,-172.627	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/0:110:110,0:110:3902:0:0:0,-33.1133,-351.376	0/0:157:155,2:155:5537:2:72:0,-40.425,-491.617	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:62:38,24:38:1321:24:848:-57.9758,0,-100.521	0/1:20:11,9:11:387:9:324:-23.4853,0,-29.1453	0/1:50:32,18:32:1143:18:648:-43.6004,0,-88.1272	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/0:112:112,0:112:3973:0:0:0,-33.7154,-357.762	0/1:69:30,39:30:1030:39:1396:-105.168,0,-72.233	0/0:89:89,0:89:3160:0:0:0,-26.7917,-284.624	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:31:14,17:14:495:17:612:-46.0815,0,-35.5511	0/1:96:54,42:54:1922:42:1499:-106.305,0,-144.357	0/1:89:47,42:47:1662:42:1508:-109.223,0,-123.074	0/1:20:12,8:12:432:8:284:-19.8828,0,-33.2006	0/1:43:20,23:20:708:23:820:-61.1782,0,-51.1013	0/1:86:48,38:48:1696:38:1348:-95.7317,0,-127.035	0/1:25:10,15:10:342:15:531:-40.5962,0,-23.5833	0/0:50:50,0:50:1763:0:0:0,-15.0515,-158.953	0/0:44:44,0:44:1545:0:0:0,-13.2453,-139.34	0/0:35:34,1:34:1220:1:36:0,-6.93777,-106.509	0/1:62:44,18:44:1559:18:640:-39.2655,0,-121.937	0/1:43:19,24:19:676:24:856:-64.4168,0,-48.2237	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:36:36,0:36:1272:0:0:0,-10.8371,-114.783
chr01	2314942	.	A	G	15502.6	PASS	AB=0.466826;ABP=23.0366;AC=36;AF=0.195652;AN=184;AO=987;CIGAR=1X;DP=5071;DPB=5071;DPRA=1.3155;EPP=2146.25;EPPR=8871.3;GTI=0;LEN=1;MEANALT=1;MQM=59.9666;MQMR=60;NS=92;NUMALT=1;ODDS=4.24268;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34889;QR=145377;RO=4084;RPL=987;RPP=2146.25;RPPR=8871.3;RPR=0;RUN=1;SAF=0;SAP=2146.25;SAR=987;SRF=0;SRP=8871.3;SRR=4084;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:90:49,41:49:1752:41:1456:-104.243,0,-130.871	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:124:123,1:123:4372:1:36:0,-33.7294,-390.059	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/0:37:37,0:37:1304:0:0:0,-11.1381,-117.661	0/0:29:29,0:29:1020:0:0:0,-8.72987,-92.1122	0/0:86:84,2:84:2996:2:68:0,-19.4309,-263.415	0/1:40:15,25:15:536:25:868:-66.3945,0,-36.5336	0/0:45:45,0:45:1584:0:0:0,-13.5463,-142.85	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:37:16,21:16:576:21:724:-54.3414,0,-41.0369	0/1:21:9,12:9:324:12:420:-31.8124,0,-23.1842	0/0:56:56,0:56:1976:0:0:0,-16.8577,-178.115	0/1:31:20,11:20:716:11:392:-26.2881,0,-55.4358	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:26:15,11:15:536:11:380:-26.7052,0,-40.748	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/1:85:42,43:42:1500:43:1532:-112.586,0,-109.707	0/1:20:8,12:8:284:12:432:-33.2006,0,-19.8828	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.864	0/1:36:22,14:22:788:14:500:-33.7171,0,-60.4077	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:197:197,0:197:7068:0:0:0,-59.3029,-636.178	0/1:78:43,35:43:1540:35:1228:-87.3435,0,-115.413	0/0:9:9,0:9:308:0:0:0,-2.70927,-28.0519	0/0:139:139,0:139:4968:0:0:0,-41.8432,-447.27	0/0:81:78,3:78:2792:3:108:0,-14.3083,-241.445	0/1:70:36,34:36:1292:34:1220:-89.0347,0,-95.5117	.:.:.:.:.:.:.:.	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:2,2:2:68:2:68:-5.25359,0,-5.25359	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:126:70,56:70:2504:56:2000:-142.344,0,-187.683	0/1:125:60,65:60:2124:65:2273:-167.2,0,-153.8	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:67:47,20:47:1680:20:696:-42.7934,0,-131.318	0/0:21:21,0:21:736:0:0:0,-6.32163,-66.5624	0/0:118:118,0:118:4208:0:0:0,-35.5215,-378.903	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/1:53:31,22:31:1112:22:772:-53.8467,0,-84.4368	0/1:83:44,39:44:1553:39:1384:-99.8733,0,-115.074	0/0:63:62,1:62:2184:1:36:0,-15.3666,-193.229	0/1:67:34,33:34:1192:33:1180:-86.339,0,-87.4161	0/0:83:83,0:83:2920:0:0:0,-24.9855,-263.036	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:71:45,26:45:1584:26:928:-62.4651,0,-121.477	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	.:.:.:.:.:.:.:.	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:78:45,33:45:1600:33:1172:-82.3072,0,-120.81	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/1:135:57,78:57:2024:78:2780:-209.803,0,-141.794	0/0:56:55,1:55:1964:1:32:0,-13.6584,-173.836	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.626	0/0:111:111,0:111:3921:0:0:0,-33.4143,-353.086	0/0:157:156,1:156:5544:1:36:0,-43.6634,-495.492	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:24:24,0:24:844:0:0:0,-7.22472,-76.2789	0/1:61:37,24:37:1328:24:855:-58.9073,0,-101.459	0/1:20:11,9:11:384:9:320:-23.1218,0,-28.8741	0/1:49:31,18:31:1077:18:612:-40.6499,0,-82.4858	0/1:27:12,15:12:428:15:516:-38.6384,0,-30.731	0/0:113:113,0:113:4016:0:0:0,-34.0164,-361.632	0/1:69:31,38:31:1088:38:1321:-98.4164,0,-77.4582	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.341	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:54:54,0:54:1912:0:0:0,-16.2556,-172.358	0/1:32:15,17:15:536:17:608:-45.4191,0,-38.9419	0/1:97:56,41:56:1980:41:1436:-100.336,0,-149.275	0/1:88:47,41:47:1684:41:1460:-105.205,0,-125.356	0/1:24:14,10:14:504:10:340:-23.7043,0,-38.4734	0/1:46:22,24:22:792:24:856:-63.5137,0,-57.7583	0/1:86:48,38:48:1720:38:1352:-96.0918,0,-129.197	0/1:24:11,13:11:396:13:464:-34.8728,0,-28.758	0/0:50:50,0:50:1761:0:0:0,-15.0515,-158.772	0/0:44:44,0:44:1548:0:0:0,-13.2453,-139.612	0/0:36:36,0:36:1269:0:0:0,-10.8371,-114.511	0/1:62:42,20:42:1468:20:696:-44.2986,0,-113.751	0/1:49:19,30:19:684:30:1080:-82.7628,0,-47.1399	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:37:37,0:37:1308:0:0:0,-11.1381,-118.022
chr01	2350508	.	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chr01	2429823	.	G	A	394278	PASS	AB=0.516834;ABP=24.8695;AC=149;AF=0.792553;AN=188;AO=18257;CIGAR=1X;DP=22586;DPB=22586;DPRA=0;EPP=39638.9;EPPR=9377.26;GTI=0;LEN=1;MEANALT=1.11702;MQM=59.9841;MQMR=59.9942;NS=94;NUMALT=1;ODDS=28.3259;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=652536;QR=153383;RO=4317;RPL=18256;RPP=39638.9;RPPR=9377.26;RPR=1;RUN=1;SAF=18257;SAP=39647.6;SAR=0;SRF=4317;SRP=9377.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:207:103,104:103:3643:104:3728:-273.407,0,-265.762	1/1:170:0,170:0:0:170:6053:-544.873,-51.1751,0	1/1:286:0,286:0:0:286:10235:-921.076,-86.0946,0	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	1/1:205:0,205:0:0:205:7306:-657.59,-61.7112,0	1/1:125:0,125:0:0:125:4483:-403.638,-37.6288,0	0/1:81:22,59:22:784:59:2124:-167.045,0,-46.5005	1/1:75:0,75:0:0:75:2690:-242.344,-22.5773,0	1/1:262:0,262:0:0:262:9386:-844.701,-78.8699,0	0/1:68:36,32:36:1266:32:1144:-82.7995,0,-93.7711	0/1:68:25,43:25:884:43:1536:-118.063,0,-59.4083	1/1:48:0,48:0:0:48:1707:-153.915,-14.4494,0	0/1:74:34,40:34:1198:40:1432:-106.901,0,-85.8478	1/1:60:0,60:0:0:60:2130:-191.967,-18.0618,0	1/1:61:0,61:0:0:61:2152:-193.945,-18.3628,0	0/1:67:27,40:27:955:40:1432:-109.009,0,-66.0958	1/1:222:0,221:0:0:221:7889:-709.589,-66.5276,0	1/1:260:0,259:0:0:259:9249:-832.02,-77.9668,0	0/1:143:61,82:61:2176:82:2935:-221.336,0,-153.059	0/1:184:118,66:118:4137:66:2364:-157.629,0,-317.125	1/1:89:0,89:0:0:89:3188:-287.144,-26.7917,0	0/1:110:48,62:48:1712:62:2219:-166.86,0,-121.252	1/1:74:0,74:0:0:74:2664:-240.005,-22.2762,0	1/1:306:1,305:1:36:305:10924:-978.829,-88.5169,0	0/1:213:110,103:110:3932:103:3680:-267.282,0,-289.954	1/1:24:1,23:1:32:23:815:-70.4715,-4.02541,0	1/1:440:0,439:0:0:439:15723:-1414.4,-132.152,0	1/1:118:1,117:1:36:117:4188:-373.503,-31.9233,0	0/1:171:74,97:74:2624:97:3453:-259.014,0,-184.93	1/1:910:2,908:2:72:908:32391:-2907.23,-267.101,0	1/1:625:5,620:5:180:620:22192:-1980.13,-171.592,0	0/1:737:317,420:317:11266:420:14994:-1127.22,0,-791.963	0/1:1169:547,621:547:19483:621:22135:-1639.76,0,-1401.21	1/1:1038:3,1035:3:108:1035:37000:-3318.73,-302.394,0	0/1:180:72,107:72:2531:107:3818:-289.612,0,-173.836	0/1:202:101,100:101:3623:100:3560:-259.742,0,-265.407	1/1:395:0,394:0:0:394:14011:-1260.56,-118.606,0	0/1:472:222,250:222:7896:250:8912:-659.977,0,-568.584	0/1:128:60,68:60:2148:68:2424:-179.883,0,-155.056	1/1:237:1,236:1:36:236:8403:-752.678,-67.7458,0	1/1:177:0,175:0:0:175:6276:-564.573,-52.6803,0	1/1:52:0,52:0:0:52:1863:-167.949,-15.6536,0	0/1:65:31,34:31:1112:34:1203:-89.0071,0,-80.8244	1/1:85:1,84:1:36:84:3009:-267.441,-21.9893,0	0/1:123:59,64:59:2105:64:2292:-169.515,0,-152.691	0/1:652:321,331:321:11420:331:11839:-869.099,0,-831.409	1/1:112:2,110:2:72:110:3914:-345.616,-26.8786,0	0/1:206:113,93:113:4030:93:3324:-237.366,0,-300.876	1/1:153:0,153:0:0:153:5470:-492.427,-46.0576,0	1/1:963:1,962:1:21:962:34458:-3098.02,-287.792,0	0/1:217:116,101:116:4140:101:3628:-261.401,0,-307.459	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:1130:1,1129:1:36:1129:40337:-3625.21,-336.566,0	1/1:183:1,182:1:36:182:6517:-583.014,-51.4902,0	1/1:79:0,79:0:0:79:2822:-254.218,-23.7814,0	1/1:877:0,877:0:0:877:31352:-2820.66,-264.003,0	1/1:547:0,547:0:0:547:19595:-1763.05,-164.663,0	1/1:110:0,110:0:0:110:3917:-352.72,-33.1133,0	0/1:77:37,40:37:1300:40:1417:-104.647,0,-94.1219	0/1:675:331,344:331:11762:344:12306:-904.183,0,-855.255	1/1:77:0,77:0:0:77:2748:-247.563,-23.1793,0	0/1:307:156,151:156:5559:151:5399:-393.625,0,-408.02	1/1:68:3,65:3:108:65:2336:-200.424,-10.3949,0	1/1:140:0,140:0:0:140:5007:-450.776,-42.1442,0	1/1:188:1,187:1:36:187:6679:-597.588,-52.9954,0	1/1:129:4,125:4:144:125:4481:-390.144,-25.5193,0	1/1:168:0,168:0:0:168:5994:-539.567,-50.573,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	0/1:74:35,39:35:1234:39:1404:-104.383,0,-89.0864	0/1:446:195,251:195:6949:251:8946:-670.861,0,-491.218	0/1:66:31,35:31:1108:35:1256:-93.4773,0,-80.163	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	1/1:175:0,175:0:0:175:6265:-563.942,-52.6803,0	0/1:282:142,138:142:5067:138:4951:-361.089,0,-371.499	1/1:164:0,164:0:0:164:5866:-528.05,-49.3689,0	1/1:154:1,153:1:36:153:5488:-490.446,-42.7603,0	1/1:813:1,812:1:36:812:28990:-2604.64,-241.139,0	1/1:192:1,191:1:36:191:6846:-612.61,-54.1995,0	0/1:137:76,61:76:2720:61:2173:-154.594,0,-203.802	0/1:232:126,106:126:4483:106:3803:-272.627,0,-333.803	0/1:84:46,38:46:1622:38:1364:-97.7742,0,-120.981	0/1:57:34,23:34:1203:23:828:-57.6854,0,-91.4163	0/1:68:39,29:39:1379:29:1044:-73.8048,0,-103.938	0/1:133:61,72:61:2172:72:2572:-191.693,0,-155.71	0/1:56:33,22:33:1163:22:775:-53.241,0,-88.1471	1/1:73:0,73:0:0:73:2592:-233.528,-21.9752,0	1/1:80:0,80:0:0:80:2853:-257.007,-24.0824,0	1/1:321:1,320:1:36:320:11451:-1026.87,-93.0324,0	0/1:546:263,283:263:9247:283:10096:-744.213,0,-667.853	0/1:70:45,25:45:1573:25:887:-59.076,0,-120.784	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:80:0,80:0:0:80:2846:-256.378,-24.0824,0
chr01	2440615	.	C	T	18783.7	PASS	AB=0.379046;ABP=434.802;AC=36;AF=0.195652;AN=184;AO=1299;CIGAR=1X;DP=8329;DPB=8329;DPRA=1.07385;EPP=2823.75;EPPR=15264.1;GTI=1;LEN=1;MEANALT=1.02381;MQM=56.1386;MQMR=59.7275;NS=92;NUMALT=1;ODDS=0.49596;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46400;QR=250596;RO=7028;RPL=0;RPP=2823.75;RPPR=15264.1;RPR=1299;RUN=1;SAF=0;SAP=2823.75;SAR=1299;SRF=0;SRP=15264.1;SRR=7028;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1269:0:0:0,-10.8371,-114.491	0/1:116:78,38:78:2796:38:1364:-87.1575,0,-216.944	0/0:170:170,0:170:6057:0:0:0,-51.1751,-543.992	0/0:314:314,0:314:11223:0:0:0,-94.5234,-1009.75	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.839	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9038	0/0:129:129,0:129:4576:0:0:0,-38.8329,-411.327	0/0:101:100,1:100:3551:1:36:0,-26.8068,-316.14	0/1:84:38,46:38:1364:46:1652:-123.549,0,-97.7579	0/0:141:141,0:141:5012:0:0:0,-42.4452,-451.217	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.054	0/1:37:23,14:23:824:14:504:-34.4707,0,-63.3288	0/1:53:33,20:33:1175:20:716:-48.7435,0,-90.1024	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.142	0/1:31:21,10:21:756:10:356:-23.0271,0,-59.0353	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.855	0/1:49:26,23:26:936:23:820:-59.3531,0,-69.7926	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4052	0/0:176:176,0:176:6300:0:0:0,-52.9813,-567.077	0/1:117:84,33:84:2995:33:1188:-71.8455,0,-234.473	0/1:104:40,64:40:1428:64:2279:-173.662,0,-97.5058	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/1:124:52,72:52:1859:72:2583:-195.144,0,-130.257	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.846	0/0:406:406,0:406:14492:0:0:0,-122.218,-1303.94	0/1:173:120,53:120:4295:53:1896:-118.695,0,-334.639	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8395	0/0:318:317,0:317:11322:0:0:0,-95.4265,-1018.41	0/0:188:188,0:188:6692:0:0:0,-56.5936,-602.069	0/1:101:65,36:65:2328:36:1284:-85.2589,0,-179.362	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:117:63,54:63:2251:54:1940:-139.604,0,-167.632	0/1:253:159,94:159:5654:94:3372:-226.949,0,-432.788	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	.:.:.:.:.:.:.:.	0/1:166:128,38:128:4530:38:1351:-71.7268,0,-357.851	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.674	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.438	0/1:37:27,10:27:964:10:347:-20.3625,0,-75.9387	0/0:96:95,1:95:3372:1:36:0,-25.3016,-300.087	0/1:72:58,14:58:2067:14:500:-23.5806,0,-164.436	0/1:203:132,71:132:4709:71:2507:-164.022,0,-362.821	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.571	0/1:108:89,19:89:3151:19:684:-29.3345,0,-251.294	0/0:141:141,0:141:5026:0:0:0,-42.4452,-452.485	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:128:63,65:63:2236:65:2294:-168,0,-162.917	0/0:37:37,0:37:1307:0:0:0,-11.1381,-117.928	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.328	0/0:144:144,0:144:5159:0:0:0,-43.3483,-464.416	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.334	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.533	0/1:82:33,49:33:1188:49:1764:-133.385,0,-82.5371	0/1:5:2,3:2:72:3:104:-8.18084,0,-5.33157	0/0:343:343,0:343:12234:0:0:0,-103.253,-1100.87	0/1:186:119,67:119:4224:67:2350:-154.92,0,-323.973	0/0:73:70,3:70:2499:3:99:0,-12.742,-215.907	0/0:105:105,0:105:3741:0:0:0,-31.6081,-336.861	0/0:177:177,0:177:6308:0:0:0,-53.2823,-567.775	0/0:90:87,3:87:3116:3:108:0,-17.1116,-270.663	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9781	0/0:85:85,0:85:2961:0:0:0,-25.5875,-266.637	0/1:52:25,27:25:887:27:964:-71.3941,0,-64.4839	0/1:23:11,12:11:388:12:424:-31.5463,0,-28.3313	0/1:114:74,40:74:2619:40:1440:-95.544,0,-201.633	0/1:76:43,33:43:1540:33:1184:-83.876,0,-116.015	0/0:127:127,0:127:4531:0:0:0,-38.2308,-407.946	0/1:135:102,33:102:3645:33:1184:-66.0713,0,-287.599	0/0:105:105,0:105:3718:0:0:0,-31.6081,-334.805	0/0:174:172,2:172:6143:2:72:0,-45.5444,-546.108	0/0:18:17,1:17:612:1:36:0,-1.82127,-51.8162	0/0:141:141,0:141:5032:0:0:0,-42.4452,-452.99	0/1:99:67,32:67:2392:32:1152:-74.0189,0,-185.691	0/1:197:127,70:127:4535:70:2496:-164.473,0,-349.001	0/1:90:45,45:45:1611:45:1614:-118.235,0,-118.187	0/1:41:25,16:25:891:16:576:-39.442,0,-68.1665	0/1:45:25,19:25:887:19:680:-47.1318,0,-66.5434	0/1:95:58,37:58:2076:37:1328:-90.9492,0,-158.513	0/1:25:18,7:18:644:7:252:-15.4202,0,-50.7648	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.626	0/0:67:67,0:67:2363:0:0:0,-20.169,-212.899	0/0:20:20,0:20:702:0:0:0,-6.0206,-63.4979	0/1:33:20,13:20:716:13:468:-32.4369,0,-54.8245	0/1:27:16,11:16:563:11:396:-27.829,0,-42.8714	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.704	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.466
chr01	2440632	.	G	A	19304.5	PASS	AB=0.380705;ABP=430.955;AC=36;AF=0.195652;AN=184;AO=1332;CIGAR=1X;DP=8522;DPB=8522;DPRA=1.51395;EPP=2895.41;EPPR=15605;GTI=1;LEN=1;MEANALT=1.04545;MQM=56.1441;MQMR=59.6654;NS=92;NUMALT=1;ODDS=0.710483;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47600;QR=255871;RO=7185;RPL=0;RPP=2895.41;RPPR=15605;RPR=1332;RUN=1;SAF=0;SAP=2895.41;SAR=1332;SRF=0;SRP=15605;SRR=7185;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.479	0/1:115:77,38:77:2753:38:1346:-86.4801,0,-213.375	0/0:176:176,0:176:6288:0:0:0,-52.9813,-564.496	0/0:326:326,0:326:11667:0:0:0,-98.1358,-1049.69	0/0:41:41,0:41:1444:0:0:0,-12.3422,-130.244	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1853	0/0:131:131,0:131:4657:0:0:0,-39.4349,-418.557	0/0:101:100,1:100:3555:1:36:0,-26.8068,-316.499	0/1:87:40,47:40:1413:47:1673:-124.533,0,-101.069	0/0:139:139,0:139:4979:0:0:0,-41.8432,-448.244	0/0:35:35,0:35:1225:0:0:0,-10.536,-110.549	0/1:38:23,15:23:816:15:540:-37.4073,0,-62.3062	0/1:55:34,21:34:1197:21:752:-51.3805,0,-91.4752	0/0:51:51,0:51:1810:0:0:0,-15.3525,-163.052	0/1:31:21,10:21:739:10:360:-23.3888,0,-57.5004	0/0:34:34,0:34:1172:0:0:0,-10.235,-105.774	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.166	0/1:50:27,23:27:948:23:824:-59.4124,0,-70.5639	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9174	0/0:178:177,1:177:6322:1:36:0,-49.9877,-565.463	0/1:119:86,33:86:3062:33:1184:-70.9096,0,-239.898	0/1:110:43,67:43:1486:67:2391:-181.828,0,-100.897	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.689	0/1:126:54,72:54:1923:72:2575:-193.827,0,-135.406	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.101	0/0:414:412,2:412:14710:2:72:0,-117.792,-1316.64	0/1:173:118,55:118:4197:55:1957:-123.982,0,-325.825	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7232	0/0:319:319,0:319:11368:0:0:0,-96.0286,-1022.96	0/0:192:192,0:192:6856:0:0:0,-57.7978,-616.621	0/1:109:70,39:70:2490:39:1396:-92.869,0,-191.362	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:119:65,54:65:2313:54:1940:-139.002,0,-172.562	0/1:260:162,98:162:5803:98:3501:-236.44,0,-444.024	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	.:.:.:.:.:.:.:.	0/1:167:127,40:127:4551:40:1432:-78.7092,0,-359.434	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2799	0/0:53:53,0:53:1867:0:0:0,-15.9546,-168.301	0/0:46:46,0:46:1631:0:0:0,-13.8474,-146.795	0/1:38:27,11:27:960:11:392:-24.1135,0,-75.2771	0/0:98:98,0:98:3497:0:0:0,-29.5009,-314.499	0/1:70:56,14:56:1994:14:504:-24.544,0,-158.661	0/1:204:133,71:133:4704:71:2544:-167.255,0,-362.075	0/0:102:102,0:102:3605:0:0:0,-30.7051,-324.414	0/1:110:90,20:90:3182:20:716:-31.6089,0,-253.486	0/0:141:141,0:141:5030:0:0:0,-42.4452,-452.843	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:129:64,65:64:2285:65:2321:-170.148,0,-166.996	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.181	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6899	0/0:148:148,0:148:5264:0:0:0,-44.5524,-473.85	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.932	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4052	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.898	0/1:83:35,47:35:1251:47:1679:-125.401,0,-87.843	0/1:5:2,3:2:72:3:104:-8.18084,0,-5.33157	0/0:353:352,1:352:12548:1:36:0,-102.666,-1125.5	0/1:185:120,65:120:4206:65:2324:-152.873,0,-322.834	0/0:71:68,3:68:2440:3:108:0,-11.3027,-209.771	0/0:107:106,1:106:3764:1:36:0,-28.6145,-335.336	0/0:180:180,0:180:6415:0:0:0,-54.1854,-577.37	0/0:91:88,3:88:3148:3:108:0,-17.4126,-273.542	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6154	0/0:86:86,0:86:3049:0:0:0,-25.8886,-274.576	0/1:50:24,26:24:860:26:924:-68.3895,0,-62.6597	0/1:26:14,12:14:491:12:432:-31.3651,0,-36.6782	0/1:119:77,42:77:2739:42:1512:-100.507,0,-210.913	0/1:83:48,35:48:1716:35:1260:-88.6037,0,-129.735	0/0:129:129,0:129:4579:0:0:0,-38.8329,-412.264	0/1:135:102,33:102:3621:33:1170:-64.8099,0,-285.438	0/0:106:106,0:106:3745:0:0:0,-31.9092,-337.228	0/0:176:174,2:174:6216:2:72:0,-46.1465,-552.662	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5273	0/0:144:144,0:144:5137:0:0:0,-43.3483,-462.115	0/1:102:65,33:65:2319:33:1159:-74.5954,0,-179.094	0/1:203:129,74:129:4613:74:2647:-175.94,0,-354.209	0/1:89:45,44:45:1612:44:1576:-115.102,0,-118.578	0/1:40:24,16:24:860:16:571:-39.3833,0,-65.6806	0/1:47:27,20:27:957:20:712:-49.5479,0,-72.2931	0/1:94:58,36:58:2084:36:1287:-87.6474,0,-159.533	0/1:26:17,9:17:612:9:311:-20.4138,0,-47.5867	0/0:46:46,0:46:1620:0:0:0,-13.8474,-146.065	0/0:67:67,0:67:2353:0:0:0,-20.169,-211.998	0/0:22:22,0:22:760:0:0:0,-6.62266,-68.7113	0/1:33:19,14:19:676:14:504:-35.6738,0,-51.2248	0/1:32:16,16:16:572:16:576:-42.5076,0,-42.1805	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.66	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.516
chr01	2440651	.	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chr01	2499179	.	G	A	31341	PASS	AB=0.515464;ABP=10.6664;AC=40;AF=0.212766;AN=188;AO=1910;CIGAR=1X;DP=8202;DPB=8202;DPRA=1.21788;EPP=4150.52;EPPR=13663.7;GTI=0;LEN=1;MEANALT=1.02273;MQM=59.9806;MQMR=59.8895;NS=94;NUMALT=1;ODDS=3.21194;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67194;QR=224618;RO=6291;RPL=0;RPP=4150.52;RPPR=13499.2;RPR=1910;RUN=1;SAF=1910;SAP=4150.52;SAR=0;SRF=6272;SRP=13499.2;SRR=19;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1374:0:0:0,-11.7402,-123.955	0/1:130:70,60:70:2500:60:2098:-149.925,0,-186.088	0/0:98:98,0:98:3486:0:0:0,-29.5009,-313.947	0/0:156:156,0:156:5561:0:0:0,-46.9607,-500.615	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.746	0/0:158:158,0:158:5645:0:0:0,-47.5627,-508.134	0/1:36:18,18:18:644:18:629:-46.0967,0,-47.4535	0/0:97:97,0:97:3434:0:0:0,-29.1999,-309.272	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.294	0/1:78:41,37:41:1476:37:1332:-96.702,0,-109.65	0/1:64:28,35:28:1008:35:1252:-93.6581,0,-71.7116	0/0:146:144,2:144:5149:2:72:0,-37.1137,-456.713	0/1:44:18,26:18:644:26:928:-70.5929,0,-45.0453	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.399	0/0:99:99,0:99:3525:0:0:0,-29.802,-317.413	0/1:65:21,44:21:726:44:1572:-122.205,0,-46.089	0/0:88:88,0:88:3168:0:0:0,-26.4906,-285.343	0/0:162:162,0:162:5774:0:0:0,-48.7669,-519.765	0/1:106:47,59:47:1680:59:2067:-154.387,0,-119.578	0/1:69:29,40:29:1044:40:1435:-108.677,0,-73.5037	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.974	0/1:72:50,22:50:1792:22:758:-46.86,0,-139.888	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.309	0/0:224:224,0:224:8017:0:0:0,-67.4307,-721.548	0/1:142:81,61:81:2893:61:2147:-150.746,0,-217.858	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:192:192,0:192:6828:0:0:0,-57.7978,-614.543	0/0:125:119,6:119:4257:6:216:0,-17.8382,-363.499	0/1:40:23,17:23:820:17:585:-40.9307,0,-62.0813	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:196:90,106:90:3221:106:3785:-281.846,0,-230.251	0/1:187:95,92:95:3416:92:3203:-232.192,0,-251.36	0/1:114:59,55:59:2108:55:1915:-138.304,0,-155.672	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.5363	0/1:82:43,39:43:1544:39:1366:-98.55,0,-114.569	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:122:122,0:122:4331:0:0:0,-36.7257,-389.963	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/1:50:27,23:27:968:23:812:-58.3494,0,-72.3859	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.695	0/1:82:44,38:44:1568:38:1349:-97.0238,0,-116.727	0/1:121:75,46:75:2662:46:1622:-109.84,0,-203.394	0/0:93:93,0:93:3283:0:0:0,-27.9958,-295.687	0/1:142:52,90:52:1853:90:3128:-238.997,0,-124.302	0/0:109:109,0:109:3866:0:0:0,-32.8123,-348.13	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/1:104:68,36:68:2425:36:1284:-84.5563,0,-187.189	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:103:103,0:103:3643:0:0:0,-31.0061,-328.073	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0382	0/0:73:73,0:73:2594:0:0:0,-21.9752,-233.706	0/1:179:79,100:79:2832:100:3596:-269.961,0,-201.234	0/1:11:4,7:4:144:7:248:-19.3529,0,-9.99757	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/1:138:55,83:55:1968:83:2915:-221.041,0,-135.842	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.659	0/0:75:75,0:75:2657:0:0:0,-22.5772,-239.32	0/0:194:193,1:193:6909:1:36:0,-54.8015,-618.183	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.815	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.941	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.666	0/1:127:46,81:46:1648:81:2866:-219.945,0,-110.375	0/1:24:10,14:10:356:14:481:-36.3903,0,-25.1565	0/1:78:45,33:45:1578:33:1184:-83.388,0,-118.817	0/1:69:35,34:35:1252:34:1179:-85.6373,0,-92.1916	0/0:166:166,0:166:5839:0:0:0,-49.971,-525.622	0/1:97:52,45:52:1856:45:1567:-112.115,0,-138.034	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.336	0/0:92:91,1:91:3264:1:36:0,-24.0965,-290.382	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.551	0/1:91:43,48:43:1544:48:1690:-124.989,0,-111.859	0/1:108:62,46:62:2205:46:1632:-114.655,0,-166.202	0/1:101:52,49:52:1864:49:1749:-127.288,0,-137.635	0/1:85:32,53:32:1144:53:1881:-143.978,0,-77.682	0/1:74:39,35:39:1396:35:1222:-88.0033,0,-103.663	0/1:131:54,77:54:1944:77:2748:-208.127,0,-135.8	0/1:39:18,21:18:640:21:752:-56.2661,0,-46.1891	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/0:66:66,0:66:2345:0:0:0,-19.868,-211.305	0/0:141:141,0:141:5060:0:0:0,-42.4452,-455.321	0/1:236:137,99:137:4916:99:3544:-248.125,0,-371.547	0/1:157:34,123:34:1220:123:4029:-315.533,0,-62.8451	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.12	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876
chr01	2499186	.	A	T	131232	PASS	AB=0.476255;ABP=21.0568;AC=148;AF=0.787234;AN=188;AO=6195;CIGAR=1X;DP=8136;DPB=8136;DPRA=0;EPP=13455.3;EPPR=4211.32;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.8893;MQMR=59.9649;NS=94;NUMALT=1;ODDS=1.8697;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221100;QR=69386;RO=1938;RPL=0;RPP=13455.3;RPPR=4211.32;RPR=6195;RUN=1;SAF=6195;SAP=13455.3;SAR=0;SRF=1938;SRP=4211.32;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:130:60,70:60:2133:70:2484:-184.667,0,-153.074	1/1:99:0,99:0:0:99:3528:-317.722,-29.802,0	1/1:156:0,156:0:0:156:5588:-503.042,-46.9607,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:93:0,93:0:0:93:3316:-298.654,-27.9958,0	1/1:159:0,159:0:0:159:5682:-511.457,-47.8638,0	0/1:33:17,16:17:604:16:568:-41.5179,0,-44.7566	1/1:99:0,99:0:0:99:3520:-316.972,-29.802,0	1/1:143:0,143:0:0:143:5108:-459.792,-43.0473,0	0/1:77:38,39:38:1360:39:1374:-100.775,0,-99.5213	0/1:61:35,26:35:1260:26:936:-66.1966,0,-95.3403	1/1:143:2,141:2:72:141:5044:-447.269,-36.2106,0	0/1:44:24,20:24:849:20:709:-50.8902,0,-63.4825	1/1:57:0,57:0:0:57:2044:-184.231,-17.1587,0	1/1:97:0,97:0:0:97:3465:-311.998,-29.1999,0	0/1:65:46,19:46:1652:19:680:-41.9622,0,-129.402	1/1:86:0,86:0:0:86:3071:-276.619,-25.8886,0	1/1:162:0,162:0:0:162:5785:-520.752,-48.7669,0	0/1:106:60,46:60:2156:46:1648:-116.699,0,-162.398	0/1:70:41,29:41:1453:29:1044:-73.2027,0,-109.992	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:72:21,51:21:756:51:1823:-142.677,0,-46.6931	1/1:49:0,49:0:0:49:1752:-157.628,-14.7505,0	1/1:221:0,220:0:0:220:7864:-707.576,-66.2266,0	0/1:141:62,79:62:2209:79:2834:-212.853,0,-156.628	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:192:0,192:0:0:192:6852:-616.627,-57.7978,0	1/1:124:5,119:5:180:119:4245:-365.614,-20.7757,0	0/1:38:16,22:16:576:22:792:-60.1665,0,-40.7358	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:28:0,28:0:0:28:992:-89.5944,-8.42884,0	0/1:196:108,88:108:3876:88:3150:-224.565,0,-289.332	0/1:190:94,96:94:3372:96:3390:-248.12,0,-246.495	0/1:112:55,57:55:1964:57:2036:-149.797,0,-143.32	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:83:40,43:40:1432:43:1544:-114.268,0,-104.192	1/1:62:1,61:1:36:61:2192:-193.945,-15.0656,0	1/1:122:0,122:0:0:122:4341:-390.866,-36.7257,0	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	0/1:49:23,26:23:809:26:936:-69.809,0,-58.3778	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/1:83:39,44:39:1400:44:1571:-116.696,0,-101.314	0/1:120:46,74:46:1648:74:2599:-198.033,0,-112.485	1/1:89:0,89:0:0:89:3170:-285.521,-26.7917,0	0/1:139:90,49:90:3220:49:1736:-114.681,0,-248.179	1/1:108:0,108:0:0:108:3847:-346.426,-32.5112,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:102:36,66:36:1288:66:2345:-180.552,0,-85.5185	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	1/1:102:0,102:0:0:102:3630:-326.903,-30.7051,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:19:0,19:0:0:19:671:-60.702,-5.71957,0	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	0/1:180:102,78:102:3668:78:2808:-198.773,0,-276.137	0/1:11:7,4:7:252:4:144:-9.99757,0,-19.7176	1/1:112:0,112:0:0:112:3997:-359.919,-33.7154,0	0/1:138:83,55:83:2976:55:1976:-136.562,0,-226.53	1/1:62:0,62:0:0:62:2217:-199.663,-18.6639,0	1/1:73:0,73:0:0:73:2577:-232.179,-21.9752,0	1/1:192:1,191:1:36:191:6752:-603.996,-54.1995,0	1/1:111:0,111:0:0:111:3976:-357.858,-33.4143,0	1/1:59:0,59:0:0:59:2111:-190.247,-17.7608,0	1/1:82:0,82:0:0:82:2925:-263.484,-24.6845,0	0/1:132:83,49:83:2984:49:1756:-118.586,0,-229.055	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:75:33,42:33:1184:42:1502:-112.895,0,-84.2911	0/1:66:32,34:32:1144:34:1205:-88.8635,0,-83.4015	1/1:161:0,161:0:0:161:5745:-517.166,-48.4658,0	0/1:97:46,51:46:1652:51:1832:-135.875,0,-119.769	1/1:74:0,74:0:0:74:2618:-235.827,-22.2762,0	1/1:88:1,87:1:36:87:3120:-277.428,-22.8924,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:98:0,98:0:0:98:3512:-316.234,-29.5009,0	0/1:91:49,42:49:1745:42:1500:-107.901,0,-129.939	0/1:107:47,60:47:1672:60:2140:-160.584,0,-118.557	0/1:104:52,52:52:1860:52:1857:-136.102,0,-136.372	0/1:86:55,31:55:1980:31:1116:-74.8631,0,-152.585	0/1:77:38,39:38:1360:39:1396:-102.76,0,-99.5167	0/1:132:79,53:79:2840:53:1891:-130.732,0,-216.101	0/1:40:22,18:22:792:18:648:-46.6107,0,-59.5645	1/1:65:0,65:0:0:65:2323:-209.33,-19.567,0	1/1:66:0,66:0:0:66:2364:-213.011,-19.868,0	1/1:141:0,141:0:0:141:5044:-453.944,-42.4452,0	0/1:238:99,139:99:3560:139:5000:-378.5,0,-248.961	0/1:161:129,30:129:4584:30:1061:-47.5771,0,-364.503	1/1:67:0,67:0:0:67:2373:-213.809,-20.169,0	1/1:80:0,80:0:0:80:2826:-254.578,-24.0824,0
chr01	2533607	.	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chr01	2551606	.	A	T	237943	PASS	AB=0.489902;ABP=7.26418;AC=147;AF=0.781915;AN=188;AO=8677;CIGAR=1X;DP=11147;DPB=11147;DPRA=59.9194;EPP=19.7977;EPPR=23.5984;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.9619;MQMR=59.9692;NS=94;NUMALT=1;ODDS=1.59907;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=310650;QR=88200;RO=2469;RPL=4209;RPP=19.7977;RPPR=23.5984;RPR=4468;RUN=1;SAF=0;SAP=18844.9;SAR=8677;SRF=0;SRP=5364.38;SRR=2469;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:104:1,103:1:36:103:3692:-328.884,-27.7088,0	0/1:141:90,51:90:3219:51:1821:-121.724,0,-247.487	1/1:291:0,291:0:0:291:10425:-938.164,-87.5997,0	1/1:249:0,249:0:0:249:8941:-804.666,-74.9565,0	1/1:69:0,69:0:0:69:2475:-223.003,-20.7711,0	1/1:26:0,26:0:0:26:921:-83.2023,-7.82678,0	1/1:134:0,134:0:0:134:4795:-431.673,-40.338,0	1/1:235:1,234:1:36:234:8376:-750.187,-67.1438,0	0/1:160:82,78:82:2921:78:2789:-203.084,0,-214.951	1/1:87:0,87:0:0:87:3109:-279.948,-26.1896,0	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	0/1:151:78,73:78:2765:73:2624:-190.951,0,-203.636	0/1:112:53,59:53:1891:59:2101:-155.635,0,-136.752	1/1:111:0,111:0:0:111:3986:-358.9,-33.4143,0	0/1:80:35,45:35:1260:45:1611:-121.197,0,-89.6231	1/1:100:0,100:0:0:100:3596:-323.839,-30.103,0	1/1:54:0,54:0:0:54:1936:-174.511,-16.2556,0	0/1:50:33,17:33:1164:17:612:-40.3619,0,-90.0127	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:181:0,181:0:0:181:6504:-585.441,-54.4864,0	0/1:222:111,111:111:3975:111:3962:-289.935,0,-290.982	0/1:116:84,32:84:2984:32:1148:-68.6736,0,-233.601	1/1:125:1,124:1:36:124:4401:-392.663,-34.0305,0	0/1:110:68,42:68:2411:42:1512:-103.261,0,-184.133	1/1:152:0,152:0:0:152:5448:-490.448,-45.7566,0	1/1:263:0,263:0:0:263:9434:-848.996,-79.1709,0	0/1:391:160,231:160:5739:231:8228:-622.828,0,-398.903	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:347:0,347:0:0:347:12392:-1115.11,-104.457,0	1/1:157:0,157:0:0:157:5644:-508.077,-47.2617,0	0/1:167:87,80:87:3104:80:2876:-208.804,0,-229.316	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:26:1,25:1:36:25:874:-75.3764,-4.22851,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:262:135,127:135:4808:127:4546:-330.436,0,-354.006	0/1:123:40,83:40:1436:83:2969:-230.414,0,-92.511	0/1:59:32,27:32:1140:27:972:-70.0371,0,-85.1484	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:149:68,81:68:2435:81:2877:-214.309,0,-174.551	1/1:37:0,37:0:0:37:1311:-118.291,-11.1381,0	1/1:202:0,202:0:0:202:7225:-650.303,-60.8081,0	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	0/1:71:28,43:28:1008:43:1548:-118.24,0,-69.6632	1/1:220:0,220:0:0:220:7895:-710.572,-66.2266,0	0/1:129:66,63:66:2367:63:2260:-164.83,0,-174.454	0/1:170:70,100:70:2508:100:3549:-268.441,0,-174.797	1/1:142:0,142:0:0:142:5053:-454.914,-42.7463,0	0/1:161:73,88:73:2615:88:3145:-234.808,0,-187.131	1/1:141:0,141:0:0:141:5055:-455.094,-42.4452,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:170:84,86:84:2997:86:3084:-226.609,0,-218.785	1/1:118:0,118:0:0:118:4236:-381.418,-35.5215,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:151:0,151:0:0:151:5394:-485.588,-45.4555,0	1/1:69:1,68:1:36:68:2419:-214.349,-17.1728,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:126:0,126:0:0:126:4514:-406.422,-37.9298,0	0/1:122:60,62:60:2115:62:2224:-163.698,0,-153.891	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:175:1,174:1:36:174:6236:-557.733,-49.082,0	0/1:172:79,93:79:2828:93:3312:-246.521,0,-202.982	1/1:72:2,70:2:72:70:2511:-219.405,-14.8374,0	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	1/1:211:2,209:2:72:209:7467:-665.237,-56.6806,0	1/1:260:6,254:6:216:254:9081:-797.474,-58.4773,0	1/1:77:0,76:0:0:76:2713:-244.052,-22.8783,0	1/1:121:0,121:0:0:121:4343:-391.022,-36.4246,0	0/1:44:25,19:25:887:19:680:-48.2838,0,-66.9028	0/1:24:21,3:21:752:3:104:-2.47809,0,-60.7815	0/1:109:83,26:83:2976:26:936:-51.7438,0,-235.26	0/1:142:75,67:75:2692:67:2400:-173.511,0,-199.778	1/1:257:0,257:0:0:257:9212:-829.049,-77.3647,0	0/1:127:77,50:77:2749:50:1800:-124.051,0,-209.42	1/1:163:0,163:0:0:163:5841:-525.791,-49.0679,0	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	0/1:113:56,57:56:1995:57:2052:-150.935,0,-145.807	0/1:263:161,102:161:5753:102:3640:-248.635,0,-438.714	0/1:70:32,38:32:1144:38:1339:-99.7353,0,-82.1974	0/1:110:49,61:49:1752:61:2196:-164.781,0,-124.851	0/1:48:21,27:21:752:27:972:-73.3485,0,-53.5568	0/1:175:84,91:84:3008:91:3260:-240.925,0,-218.271	0/1:25:13,12:13:464:12:432:-31.6954,0,-34.5718	1/1:88:0,88:0:0:88:3143:-283.078,-26.4906,0	1/1:106:0,106:0:0:106:3812:-343.276,-31.9092,0	1/1:105:0,105:0:0:105:3780:-340.397,-31.6082,0	0/1:157:77,80:77:2759:80:2857:-210.081,0,-201.289	0/1:78:46,32:46:1639:32:1148:-80.1495,0,-124.318	1/1:112:1,111:1:36:111:3946:-351.733,-30.1171,0	1/1:145:0,145:0:0:145:5208:-468.857,-43.6494,0
chr01	2561380	.	C	T	32177.2	PASS	AB=0.524126;ABP=21.242;AC=39;AF=0.207447;AN=188;AO=1904;CIGAR=1X;DP=7682;DPB=7682;DPRA=1.32544;EPP=4120.14;EPPR=12374.5;GTI=5;LEN=1;MEANALT=1;MQM=53.2868;MQMR=54.6031;NS=94;NUMALT=1;ODDS=0.8656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68181;QR=206283;RO=5777;RPL=2;RPP=4120.14;RPPR=12374.5;RPR=1902;RUN=1;SAF=1904;SAP=4137.49;SAR=0;SRF=5777;SRP=12547.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:40:39,1:39:1379:1:36:0,-8.44292,-120.81	0/1:160:71,89:71:2536:89:3166:-234.49,0,-180.327	0/0:130:130,0:130:4631:0:0:0,-39.1339,-416.465	0/0:190:190,0:190:6754:0:0:0,-57.1957,-603.673	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.1914	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:127:127,0:127:4527:0:0:0,-38.2308,-404.23	0/0:151:151,0:151:5394:0:0:0,-45.4555,-485.591	0/1:87:45,42:45:1616:42:1504:-109.465,0,-119.54	0/0:94:94,0:94:3363:0:0:0,-28.2968,-300.742	0/0:78:78,0:78:2774:0:0:0,-23.4803,-247.777	0/1:68:39,29:39:1396:29:1040:-73.4443,0,-105.469	0/1:75:36,39:36:1292:39:1404:-104.082,0,-94.0065	0/0:87:86,1:86:3088:1:36:0,-22.5913,-274.549	0/1:62:34,28:34:1224:28:1004:-70.9007,0,-91.0259	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:85:38,47:38:1364:47:1692:-126.979,0,-97.4732	0/0:56:56,0:56:1990:0:0:0,-16.8577,-179.373	0/0:119:119,0:119:4255:0:0:0,-35.8226,-380.596	0/1:103:41,62:41:1467:62:2219:-168.862,0,-101.309	0/1:41:13,28:13:464:28:1004:-77.0818,0,-29.4756	0/0:49:49,0:49:1740:0:0:0,-14.7505,-155.915	0/1:81:42,39:42:1491:39:1404:-102.276,0,-110.1	0/0:62:62,0:62:2191:0:0:0,-18.6639,-197.456	0/0:165:165,0:165:5912:0:0:0,-49.6699,-528.659	0/1:177:87,90:87:3104:90:3236:-238.178,0,-226.306	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:194:194,0:194:6919:0:0:0,-58.3998,-617.725	0/0:115:115,0:115:4093:0:0:0,-34.6184,-368.556	0/1:117:69,48:69:2437:48:1728:-118.547,0,-179.675	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81819	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:184:87,97:87:3120:97:3480:-253.529,0,-223.539	0/1:152:80,72:80:2856:72:2580:-186.693,0,-211.522	0/1:91:39,52:39:1387:52:1860:-140.268,0,-97.7344	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:109:57,52:57:2044:52:1860:-134.867,0,-151.42	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:112:112,0:112:4003:0:0:0,-33.7154,-360.459	0/0:44:44,0:44:1584:0:0:0,-13.2453,-141.848	0/1:53:32,21:32:1148:21:752:-51.1548,0,-87.0246	0/0:50:50,0:50:1787:0:0:0,-15.0515,-160.008	0/1:136:59,77:59:2103:77:2753:-207.071,0,-148.599	0/1:97:41,56:41:1472:56:2007:-148.835,0,-102.742	0/0:80:80,0:80:2858:0:0:0,-24.0824,-255.188	0/1:134:67,67:67:2392:67:2396:-171.553,0,-173.775	0/0:101:101,0:101:3615:0:0:0,-30.404,-323.404	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.1665	0/1:140:60,80:60:2152:80:2861:-215.582,0,-151.803	0/0:46:46,0:46:1648:0:0:0,-13.8474,-147.523	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:34:34,0:34:1224:0:0:0,-10.235,-109.704	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.57343	0/0:15:15,0:15:532:0:0:0,-4.51545,-47.9183	0/0:68:67,1:67:2400:1:36:0,-16.8718,-210.764	0/1:93:45,48:45:1616:48:1723:-125.358,0,-116.742	1/1:6:0,6:0:0:6:216:-19.6537,-1.80618,0	0/0:60:60,0:60:2152:0:0:0,-18.0618,-192.617	0/1:144:62,82:62:2208:82:2940:-217.941,0,-154.469	0/0:115:113,2:113:4031:2:72:0,-27.7817,-356.142	0/0:69:69,0:69:2461:0:0:0,-20.7711,-220.359	0/0:67:66,0:66:2337:0:0:0,-19.868,-208.935	0/0:143:141,2:141:5052:2:72:0,-36.3051,-444.688	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/0:83:83,0:83:2979:0:0:0,-24.9855,-268.341	0/1:91:40,51:40:1432:51:1832:-135.573,0,-100.93	0/1:27:15,12:15:524:12:432:-30.6414,0,-39.0741	0/1:104:46,58:46:1635:58:2052:-153.642,0,-116.131	0/1:56:15,41:15:536:41:1472:-115.918,0,-31.7171	0/0:173:173,0:173:6153:0:0:0,-52.0782,-553.872	0/1:162:91,71:91:3259:71:2532:-175.766,0,-242.834	0/0:71:70,1:70:2492:1:36:0,-17.7749,-220.935	0/0:144:144,0:144:5114:0:0:0,-43.3483,-460.404	0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9347	0/0:147:147,0:147:5238:0:0:0,-44.2514,-471.559	0/1:78:37,41:37:1294:41:1468:-108.936,0,-93.2792	0/1:130:58,72:58:2067:72:2573:-189.69,0,-145.724	0/1:90:44,46:44:1580:46:1652:-119.613,0,-114.525	0/1:71:33,38:33:1188:38:1364:-100.033,0,-85.1372	0/1:81:44,37:44:1562:37:1325:-93.5817,0,-115.575	0/1:105:57,48:57:2044:48:1707:-120.448,0,-151.541	0/1:32:15,17:15:536:17:612:-45.7805,0,-38.9419	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:59:59,0:59:2099:0:0:0,-17.7608,-189.179	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/1:127:61,66:61:2188:66:2355:-173.969,0,-158.465	0/1:57:13,44:13:468:44:1580:-123.547,0,-24.9852	0/0:56:56,0:56:1996:0:0:0,-16.8577,-178.731	0/0:94:94,0:94:3380:0:0:0,-28.2968,-302.482
chr01	2607882	.	CGACT	TGACT,TGACC	343638	PASS	AB=0.526291,0.467256;ABP=28.1296,41.9743;AC=151,37;AF=0.803191,0.196809;AN=188;AO=11620,1998;CIGAR=1X4M,1X3M1X;DP=13699;DPB=13701.4;DPRA=0,0.905069;EPP=13644.8,2848.23;EPPR=10.7656;GTI=2;LEN=1,5;MEANALT=2.29787,2.79245;MQM=59.9962,59.992;MQMR=60;NS=94;NUMALT=2;ODDS=4.88935;PAIRED=0,0;PAIREDR=0;PAO=6,6;PQA=211.5,211.5;PQR=0;PRO=0;QA=415921,69205;QR=240;RO=7;RPL=10083,1808;RPP=13651.2,2848.23;RPPR=10.7656;RPR=1537,190;RUN=1,1;SAF=11619,1998;SAP=25226.8,4341.61;SAR=1,0;SRF=7;SRP=18.2106;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/2:135:0,78,55:0:0:78,55:2804,1894:-382.669,-153.899,-130.419,-228.837,0,-212.28	1/1:100:0,99,1:0:0:99,1:3536,36:-318.087,-29.802,0,-315.15,-26.5047,-314.849	1/1:201:0,199,2:0:0:199,2:7094,62:-638.209,-59.905,0,-633.233,-54.6185,-632.631	1/1:113:0,113,0:0:0:113,0:4036,0:-363.369,-34.0164,0,-363.369,-34.0164,-363.369	1/1:63:0,62,1:0:0:62,1:2220,36:-199.705,-18.6639,0,-196.767,-15.3666,-196.466	1/1:126:1,125,0:1:31:125,0:4473,0:-399.638,-34.8303,0,-399.939,-37.6288,-402.428	1/1:136:0,136,0:0:0:136,0:4867,0:-438.183,-40.9401,0,-438.183,-40.9401,-438.183	1/2:73:0,36,35:0:0:36,35:1292,1196:-202.548,-97.1495,-86.3124,-105.491,0,-94.9549	1/1:103:0,103,0:0:0:103,0:3692,0:-332.482,-31.0061,0,-332.482,-31.0061,-332.482	1/1:121:0,118,0:0:0:118,0:4213,0:-379.074,-35.5215,0,-379.074,-35.5215,-379.074	1/2:80:0,39,39:0:0:39,39:1387,1364:-224.066,-111.029,-99.2889,-113.1,0,-101.359	1/2:64:0,33,31:0:0:33,31:1169,1093:-184.576,-89.3483,-79.4143,-95.5813,0,-86.2494	1/1:75:0,74,0:0:0:74,0:2639,0:-237.397,-22.2762,0,-237.397,-22.2762,-237.397	1/2:53:0,24,28:0:0:24,28:851,971:-148.246,-78.9124,-71.6877,-69.3251,0,-60.8963	1/1:56:0,56,0:0:0:56,0:1997,0:-180.002,-16.8577,0,-180.002,-16.8577,-180.002	1/1:54:0,54,0:0:0:54,0:1921,0:-173.165,-16.2556,0,-173.165,-16.2556,-173.165	1/2:52:0,28,24:0:0:28,24:995,833:-149.145,-68.0605,-59.6317,-81.4352,0,-74.2105	1/1:166:0,166,0:0:0:166,0:5947,0:-535.336,-49.971,0,-535.336,-49.971,-535.336	1/1:190:0,189,0:0:0:189,0:6759,0:-608.143,-56.8947,0,-608.143,-56.8947,-608.143	1/2:125:0,60,64:0:0:60,64:2148,2155:-349.805,-174.627,-156.565,-175.2,0,-155.934	1/2:130:0,54,76:0:0:54,76:1940,2642:-373.357,-215.091,-198.836,-158.561,0,-135.683	1/1:99:0,97,2:0:0:97,2:3476,72:-312.661,-29.1999,0,-306.787,-22.9953,-306.185	1/2:58:0,27,29:0:0:27,29:945,997:-157.817,-80.9316,-72.8038,-76.856,0,-68.1261	1/1:70:0,70,0:0:0:70,0:2484,0:-223.812,-21.0721,0,-223.812,-21.0721,-223.812	1/1:293:0,289,1:0:0:289,1:10360,34:-932.005,-86.9977,0,-929.247,-84.2305,-928.946	1/2:205:0,112,92:0:0:112,92:3997,3203:-586.329,-260.477,-226.762,-325.873,0,-298.179	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:264:0,261,0:0:0:261,0:9364,0:-842.46,-78.5688,0,-842.46,-78.5688,-842.46	1/1:172:0,172,0:0:0:172,0:6161,0:-554.586,-51.7772,0,-554.586,-51.7772,-554.586	1/2:102:0,43,59:0:0:43,59:1548,2047:-293.056,-166.741,-153.797,-126.669,0,-108.908	1/1:142:0,141,0:0:0:141,0:5052,0:-454.515,-42.4452,0,-454.515,-42.4452,-454.515	1/1:332:0,329,2:0:0:329,2:11776,67:-1059.34,-99.0389,0,-1053.91,-93.6697,-1053.31	1/1:252:0,240,10:0:0:240,10:8592,343:-772.93,-72.2472,0,-745.083,-44.4136,-742.073	1/2:159:0,139,19:0:0:139,19:5004,657:-461.766,-53.4497,-11.6065,-408.38,0,-402.661	1/1:813:0,810,0:0:0:810,0:29010,0:-2609.73,-243.834,0,-2609.73,-243.834,-2609.73	1/2:182:0,88,93:0:0:88,93:3160,3281:-524.934,-267.157,-240.666,-257.774,0,-229.778	1/2:239:0,122,114:0:0:122,114:4372,3962:-678.698,-322.123,-285.397,-356.587,0,-322.27	1/2:157:0,114,42:0:0:114,42:4069,1434:-448.162,-116.427,-82.1101,-331.798,0,-319.155	1/1:176:0,171,2:0:0:171,2:6140,72:-552.409,-51.4761,0,-546.534,-45.552,-545.932	1/2:125:0,57,67:0:0:57,67:2033,2290:-351.564,-185.832,-168.673,-165.722,0,-145.553	1/1:94:0,93,0:0:0:93,0:3336,0:-300.097,-27.9958,0,-300.097,-27.9958,-300.097	1/1:69:0,68,1:0:0:68,1:2444,36:-219.855,-20.47,0,-216.917,-17.1728,-216.616	1/1:49:0,49,0:0:0:49,0:1751,0:-157.873,-14.7505,0,-157.873,-14.7505,-157.873	1/1:55:0,55,0:0:0:55,0:1972,0:-177.755,-16.5567,0,-177.755,-16.5567,-177.755	1/1:144:0,143,0:0:0:143,0:5066,0:-455.784,-43.0473,0,-455.784,-43.0473,-455.784	1/2:95:0,47,48:0:0:47,48:1692,1640:-271.503,-133.435,-119.287,-138.418,0,-123.969	1/2:222:0,111,110:0:0:111,110:3984,3789:-632.879,-307.895,-274.481,-325.124,0,-292.01	1/1:109:0,107,0:0:0:107,0:3836,0:-345.223,-32.2102,0,-345.223,-32.2102,-345.223	1/2:118:0,57,60:0:0:57,60:2052,2110:-339.244,-171.807,-154.648,-167.492,0,-149.43	1/1:60:0,60,0:0:0:60,0:2152,0:-193.947,-18.0618,0,-193.947,-18.0618,-193.947	1/1:475:0,475,0:0:0:475,0:17032,0:-1532.24,-142.989,0,-1532.24,-142.989,-1532.24	1/2:153:0,74,78:0:0:74,78:2656,2717:-437.644,-220.987,-198.711,-216.699,0,-193.219	1/1:50:0,50,0:0:0:50,0:1792,0:-161.562,-15.0515,0,-161.562,-15.0515,-161.562	1/1:757:1,750,0:1:35:750,0:26849,0:-2412.14,-222.923,0,-2412.44,-225.773,-2415.29	1/1:148:0,148,0:0:0:148,0:53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chr01	2610050	.	T	A	31892.1	PASS	AB=0.494547;ABP=4.02857;AC=40;AF=0.212766;AN=188;AO=1970;CIGAR=1X;DP=9059;DPB=9059;DPRA=1.19742;EPP=4280.81;EPPR=15396.6;GTI=1;LEN=1;MEANALT=1;MQM=47.5584;MQMR=53.9381;NS=94;NUMALT=1;ODDS=1.72002;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70451;QR=253608;RO=7089;RPL=0;RPP=4280.81;RPPR=15154.3;RPR=1970;RUN=1;SAF=1970;SAP=4280.81;SAR=0;SRF=7061;SRP=15154.3;SRR=28;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:70:70,0:70:2500:0:0:0,-21.0721,-224.312	0/1:86:49,37:49:1752:37:1286:-87.8948,0,-130.734	0/0:154:154,0:154:5528:0:0:0,-46.3586,-494.56	0/0:183:183,0:183:6548:0:0:0,-55.0885,-588.302	0/0:58:58,0:58:2064:0:0:0,-17.4597,-185.346	0/0:19:19,0:19:668:0:0:0,-5.71957,-60.1275	0/0:128:128,0:128:4576:0:0:0,-38.5318,-411.518	0/0:193:192,1:192:6888:1:36:0,-54.5402,-611.028	0/1:128:86,42:86:3072:42:1500:-94.9257,0,-236.758	0/0:166:166,0:166:5937:0:0:0,-49.971,-531.701	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.65	0/1:89:45,44:45:1608:44:1580:-113.163,0,-117.673	0/1:63:35,28:35:1256:28:1004:-69.7017,0,-94.0883	0/0:106:106,0:106:3792:0:0:0,-31.9092,-339.021	0/1:57:24,33:24:864:33:1184:-89.2616,0,-60.7774	0/0:85:85,0:85:3048:0:0:0,-25.5875,-272.327	0/0:56:56,0:56:1996:0:0:0,-16.8577,-178.927	0/1:49:24,25:24:864:25:900:-65.2762,0,-62.876	0/0:42:42,0:42:1504:0:0:0,-12.6433,-133.532	0/0:141:141,0:141:5048:0:0:0,-42.4452,-452.685	0/1:185:87,98:87:3109:98:3443:-249.28,0,-223.649	0/1:92:23,69:23:816:69:2464:-193.158,0,-45.9079	0/0:141:141,0:141:5064:0:0:0,-42.4452,-454.927	0/1:101:47,54:47:1680:54:1932:-140.896,0,-120.126	0/0:90:90,0:90:3224:0:0:0,-27.0927,-289.543	0/0:333:333,0:333:11908:0:0:0,-100.243,-1069.9	0/1:92:49,43:49:1760:43:1544:-109.645,0,-129.123	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.126	0/0:125:125,0:125:4480:0:0:0,-37.6287,-402.994	0/0:145:145,0:145:5157:0:0:0,-43.6493,-462.079	0/1:83:55,28:55:1976:28:1000:-64.029,0,-151.417	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/1:10:9,1:9:309:1:36:-0.563134,0,-25.093	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/1:11:5,6:5:180:6:216:-16.2404,0,-13.1934	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.9686	0/1:189:93,96:93:3332:96:3444:-251.388,0,-242.631	0/1:208:137,71:137:4896:71:2552:-163.985,0,-376.432	0/1:61:26,35:26:932:35:1256:-93.674,0,-64.9902	0/1:2:1,1:1:36:1:36:-2.97137,0,-2.94646	0/1:136:59,77:59:2116:77:2768:-206.291,0,-149.408	0/0:28:28,0:28:1000:0:0:0,-8.42884,-89.9229	0/0:137:137,0:137:4896:0:0:0,-41.2411,-438.924	0/0:62:62,0:62:2232:0:0:0,-18.6639,-200.373	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.714	0/0:76:76,0:76:2709:0:0:0,-22.8783,-243.821	0/1:106:57,49:57:2048:49:1741:-123.046,0,-152.186	0/1:132:63,69:63:2229:69:2480:-182.131,0,-160.901	0/0:171:171,0:171:6109:0:0:0,-51.4761,-548.324	0/1:169:74,95:74:2644:95:3408:-253.106,0,-186.339	0/0:117:117,0:117:4161:0:0:0,-35.2205,-372.226	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0124	0/1:135:60,75:60:2156:75:2676:-195.722,0,-152.632	0/0:114:114,0:114:4068:0:0:0,-34.3174,-365.272	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1226	0/0:115:115,0:115:4116:0:0:0,-34.6184,-368.287	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.247	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4912	0/1:25:10,15:10:356:15:540:-41.132,0,-24.8454	0/0:172:172,0:172:6149:0:0:0,-51.7772,-551.174	0/1:115:69,46:69:2476:46:1629:-111.465,0,-187.857	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.9939	0/0:111:111,0:111:3973:0:0:0,-33.4143,-356.589	0/1:187:95,92:95:3388:92:3312:-238.213,0,-247.5	0/0:188:172,16:172:6137:16:576:0,-4.77884,-497.622	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.505	0/0:187:187,0:187:6676:0:0:0,-56.2926,-599.048	0/0:200:198,2:198:7084:2:72:0,-53.3982,-628.608	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.168	0/0:60:60,0:60:2152:0:0:0,-18.0618,-192.985	0/1:71:40,31:40:1436:31:1116:-77.9934,0,-107.59	0/1:24:11,13:11:396:13:464:-34.4863,0,-28.6213	0/1:196:83,113:83:2968:113:4056:-297.85,0,-207.114	0/1:95:60,35:60:2152:35:1260:-80.1833,0,-164.822	0/0:194:194,0:194:6928:0:0:0,-58.3998,-619.113	0/1:134:65,69:65:2321:69:2465:-180.309,0,-167.797	0/1:133:65,68:65:2332:68:2395:-170.738,0,-169.224	0/0:124:123,1:123:4424:1:36:0,-33.7691,-391.297	0/0:14:14,0:14:504:0:0:0,-4.21442,-44.6484	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.06	0/1:114:56,58:56:2008:58:2076:-148.608,0,-145.215	0/1:155:71,84:71:2536:84:3020:-222.71,0,-181.335	0/1:48:27,21:27:968:21:748:-52.7087,0,-72.7319	0/1:70:40,30:40:1436:30:1072:-74.0173,0,-108.179	0/1:46:31,15:31:1108:15:532:-34.1751,0,-86.0288	0/1:135:76,59:76:2720:59:2112:-146.835,0,-203.818	0/1:17:11,6:11:392:6:212:-13.7119,0,-30.2223	0/0:71:71,0:71:2540:0:0:0,-21.3731,-226.946	0/0:100:100,0:100:3596:0:0:0,-30.103,-321.686	0/0:74:74,0:74:2652:0:0:0,-22.2762,-237.859	0/1:139:58,81:58:2076:81:2908:-215.408,0,-143.388	0/1:55:17,38:17:612:38:1364:-105.459,0,-38.6484	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.292	0/0:107:107,0:107:3848:0:0:0,-32.2102,-345.761
chr01	2610053	.	G	A	152579	PASS	AB=0.50113;ABP=3.05448;AC=147;AF=0.781915;AN=188;AO=7179;CIGAR=1X;DP=9187;DPB=9187;DPRA=0;EPP=15592;EPPR=4358.98;GTI=1;LEN=1;MEANALT=1.02128;MQM=53.9017;MQMR=47.5743;NS=94;NUMALT=1;ODDS=2.93707;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257006;QR=71787;RO=2006;RPL=0;RPP=15592;RPPR=4358.98;RPR=7179;RUN=1;SAF=7179;SAP=15592;SAR=0;SRF=2006;SRP=4358.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:71:0,71:0:0:71:2529:-226.909,-21.3731,0	0/1:89:39,50:39:1400:50:1796:-133.736,0,-95.4931	1/1:158:0,158:0:0:158:5653:-504.988,-47.5627,0	1/1:190:0,190:0:0:190:6803:-611.253,-57.1957,0	1/1:56:0,56:0:0:56:2016:-181.136,-16.8577,0	1/1:18:0,18:0:0:18:648:-58.3106,-5.41854,0	1/1:132:0,132:0:0:132:4732:-425.55,-39.736,0	1/1:191:1,190:1:36:190:6807:-604.233,-53.9381,0	0/1:125:40,85:40:1440:85:3056:-236.206,0,-90.4603	1/1:165:1,164:1:36:164:5880:-523.524,-46.0717,0	1/1:60:0,60:0:0:60:2141:-192.611,-18.0618,0	0/1:91:45,46:45:1612:46:1656:-121.274,0,-115.436	0/1:64:30,34:30:1072:34:1220:-90.5257,0,-75.5286	1/1:112:0,112:0:0:112:4020:-359.473,-33.7154,0	0/1:59:34,25:34:1220:25:900:-63.4129,0,-91.8914	1/1:84:0,84:0:0:84:2978:-266.099,-25.2865,0	1/1:55:0,55:0:0:55:1972:-176.75,-16.5567,0	0/1:48:25,23:25:885:23:816:-59.0056,0,-64.2771	1/1:42:0,42:0:0:42:1497:-132.594,-12.6433,0	1/1:141:0,140:0:0:140:5009:-448.929,-42.1442,0	0/1:193:105,88:105:3738:88:3160:-225.751,0,-273.3	0/1:91:69,22:69:2445:22:792:-44.0521,0,-191.764	1/1:151:0,151:0:0:151:5409:-485.85,-45.4555,0	0/1:100:54,46:54:1929:46:1633:-116.454,0,-140.855	1/1:91:0,91:0:0:91:3252:-292.064,-27.3937,0	1/1:334:0,334:0:0:334:11951:-1073.41,-100.544,0	0/1:95:44,51:44:1580:51:1822:-134.368,0,-111.67	1/1:32:0,32:0:0:32:1152:-103.717,-9.63296,0	1/1:128:0,128:0:0:128:4596:-413.424,-38.5318,0	1/1:150:0,150:0:0:150:5366:-480.694,-45.1545,0	0/1:85:28,57:28:1008:57:2037:-156.299,0,-63.8529	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	0/1:11:1,10:1:36:10:356:-28.9403,0,-0.262104	0/1:2:1,1:1:36:1:36:-2.98717,0,-2.52158	0/1:12:7,5:7:248:5:180:-12.8924,0,-18.8181	1/1:10:0,10:0:0:10:360:-32.4588,-3.0103,0	0/1:190:100,90:100:3588:90:3232:-233.366,0,-263.87	0/1:210:72,138:72:2554:138:4960:-381.385,0,-163.702	0/1:64:37,27:37:1324:27:964:-66.9619,0,-98.8884	0/1:2:1,1:1:36:1:36:-2.94646,0,-2.97137	0/1:134:76,58:76:2732:58:2084:-147.119,0,-203.687	1/1:27:0,27:0:0:27:972:-87.3898,-8.12781,0	1/1:145:0,145:0:0:145:5183:-464.678,-43.6494,0	1/1:58:0,58:0:0:58:2084:-187.06,-17.4597,0	1/1:33:0,33:0:0:33:1184:-106.79,-9.93399,0	1/1:79:0,79:0:0:79:2836:-255.244,-23.7814,0	0/1:106:50,56:50:1792:56:2012:-148.955,0,-127.546	0/1:133:71,62:71:2533:62:2212:-159.118,0,-186.562	1/1:175:0,175:0:0:175:6265:-562.263,-52.6803,0	0/1:169:94,75:94:3376:75:2696:-191.014,0,-250.232	1/1:119:0,119:0:0:119:4225:-377.952,-35.8226,0	1/1:7:0,7:0:0:7:252:-23.0124,-2.10721,0	0/1:135:74,61:74:2648:61:2188:-155.508,0,-193.023	1/1:115:0,115:0:0:115:4128:-370.479,-34.6185,0	1/1:12:0,12:0:0:12:432:-39.1226,-3.61236,0	1/1:116:0,116:0:0:116:4133:-370.129,-34.9195,0	1/1:40:0,40:0:0:40:1436:-129.275,-12.0412,0	1/1:5:0,5:0:0:5:180:-16.4912,-1.50515,0	0/1:25:15,10:15:540:10:360:-25.208,0,-41.132	1/1:179:0,179:0:0:179:6409:-573.843,-53.8844,0	0/1:115:50,65:50:1784:65:2340:-175.711,0,-125.296	1/1:8:0,8:0:0:8:288:-25.9939,-2.40824,0	1/1:111:0,111:0:0:111:3968:-356.113,-33.4143,0	0/1:190:91,99:91:3260:99:3540:-260.258,0,-232.99	1/1:193:16,177:16:576:177:6245:-507.274,-6.284,0	1/1:65:0,65:0:0:65:2328:-209.605,-19.567,0	1/1:198:0,198:0:0:198:7108:-637.335,-59.6039,0	1/1:203:2,201:2:72:201:7152:-635.004,-54.3013,0	1/1:47:0,47:0:0:47:1688:-151.883,-14.1484,0	1/1:61:0,61:0:0:61:2184:-195.861,-18.3628,0	0/1:64:31,33:31:1101:33:1176:-86.3084,0,-78.7748	0/1:24:14,10:14:504:10:360:-25.4114,0,-38.0564	0/1:198:113,85:113:4044:85:3041:-213.209,0,-296.233	0/1:98:36,62:36:1296:62:2220:-170.027,0,-82.4833	1/1:195:0,195:0:0:195:6985:-623.58,-58.7009,0	0/1:137:69,68:69:2468:68:2440:-177.567,0,-179.689	0/1:137:71,66:71:2533:66:2353:-169.854,0,-180.052	1/1:128:1,127:1:36:127:4537:-401.397,-34.9732,0	1/1:15:0,15:0:0:15:536:-47.5224,-4.51545,0	1/1:77:0,77:0:0:77:2764:-248.126,-23.1793,0	0/1:116:57,59:57:2048:59:2104:-153.341,0,-145.481	0/1:155:83,72:83:2969:72:2588:-186.004,0,-218.352	0/1:48:21,27:21:756:27:968:-72.7778,0,-53.4142	0/1:70:30,39:30:1076:39:1400:-104.885,0,-74.3061	0/1:45:14,31:14:500:31:1116:-87.0477,0,-31.6047	0/1:136:63,73:63:2260:73:2619:-194.462,0,-159.925	0/1:17:7,10:7:252:10:360:-27.1734,0,-17.2879	1/1:71:0,71:0:0:71:2551:-227.842,-21.3731,0	1/1:100:0,100:0:0:100:3592:-321.323,-30.103,0	1/1:75:0,75:0:0:75:2673:-240.324,-22.5773,0	0/1:139:83,56:83:2976:56:2008:-137.279,0,-221.512	0/1:59:40,19:40:1432:19:684:-43.9085,0,-110.368	1/1:67:0,67:0:0:67:2400:-215.645,-20.169,0	1/1:108:0,108:0:0:108:3888:-349.355,-32.5112,0
chr01	2610091	.	GGGAA	GGGAG,CGGAG	194202	PASS	AB=0.496114,0.499624;ABP=3.53343,3.0152;AC=147,41;AF=0.781915,0.218085;AN=188;AO=7081,2017;CIGAR=4M1X,1X3M1X;DP=9138;DPB=9138.4;DPRA=0,1.18508;EPP=15379.2,4382.87;EPPR=0;GTI=1;LEN=1,5;MEANALT=1.88298,2.40426;MQM=54.0237,47.5776;MQMR=0;NS=94;NUMALT=2;ODDS=2.5865;PAIRED=0,0;PAIREDR=0;PAO=0.5,1;PQA=0,36;PQR=0;PRO=0.5;QA=253295,70002;QR=0;RO=0;RPL=7081,2017;RPP=15379.2,4382.87;RPPR=0;RPR=0,0;RUN=1,1;SAF=7081,2017;SAP=15379.2,4382.87;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:68:0,67,0:0:0:67,0:2396,0:-214.83,-20.169,0,-214.83,-20.169,-214.83	1/2:87:0,48,39:0:0:48,39:1715,1351:-246.394,-106.996,-92.5461,-139.744,0,-128.004	1/1:153:0,151,0:0:0:151,0:5398,0:-482.83,-45.4555,0,-482.83,-45.4555,-482.83	1/1:184:0,184,0:0:0:184,0:6600,0:-593.056,-55.3895,0,-593.056,-55.3895,-593.056	1/1:57:0,56,0:0:0:56,0:2008,0:-180.077,-16.8577,0,-180.077,-16.8577,-180.077	1/1:17:0,17,0:0:0:17,0:608,0:-54.9097,-5.11751,0,-54.9097,-5.11751,-54.9097	1/1:132:0,130,0:0:0:130,0:4664,0:-419.25,-39.1339,0,-419.25,-39.1339,-419.25	1/1:193:0,192,1:0:0:192,1:6864,36:-611.834,-57.7978,0,-608.932,-54.5402,-608.631	1/2:126:0,84,42:0:0:84,42:2990,1487:-362.048,-119.766,-94.4794,-242.633,0,-229.99	1/1:167:0,167,0:0:0:167,0:5957,0:-535.121,-50.272,0,-535.121,-50.272,-535.121	1/1:60:0,60,0:0:0:60,0:2137,0:-192.253,-18.0618,0,-192.253,-18.0618,-192.253	1/2:91:0,46,45:0:0:46,45:1652,1579:-260.641,-126.527,-112.679,-134.465,0,-120.919	1/2:65:0,34,30:0:0:34,30:1216,1013:-179.764,-80.8844,-70.6494,-98.9244,0,-89.8935	1/1:108:0,108,0:0:0:108,0:3855,0:-344.753,-32.5112,0,-344.753,-32.5112,-344.753	1/2:60:0,25,35:0:0:25,35:877,1215:-169.938,-98.71,-91.1843,-71.5763,0,-61.0402	1/1:85:0,85,0:0:0:85,0:3043,0:-272.43,-25.5876,0,-272.43,-25.5876,-272.43	1/1:56:0,56,0:0:0:56,0:1963,0:-176.148,-16.8577,0,-176.148,-16.8577,-176.148	1/2:48:0,23,25:0:0:23,25:828,869:-136.994,-69.88,-62.9563,-67.4642,0,-59.9385	1/1:43:0,42,0:0:0:42,0:1512,0:-134.617,-12.6433,0,-134.617,-12.6433,-134.617	1/1:143:0,140,2:0:0:140,2:5024,72:-450.372,-42.1442,0,-444.67,-36.4414,-444.068	1/2:197:0,91,106:0:0:91,106:3268,3629:-556.298,-290.597,-263.203,-266.05,0,-234.14	1/2:92:0,22,70:0:0:22,70:779,2359:-254.028,-190.677,-184.055,-63.7,0,-42.6279	1/1:146:0,146,0:0:0:146,0:5240,0:-470.842,-43.9504,0,-470.842,-43.9504,-470.842	1/2:99:0,45,54:0:0:45,54:1597,1856:-278.786,-148.985,-135.438,-130.148,0,-113.893	1/1:94:0,94,0:0:0:94,0:3380,0:-303.553,-28.2968,0,-303.553,-28.2968,-303.553	1/1:333:0,331,0:0:0:331,0:11871,0:-1066.29,-99.6409,0,-1066.29,-99.6409,-1066.29	1/2:94:0,48,46:0:0:48,46:1720,1612:-268.445,-129.549,-115.1,-139.246,0,-125.398	1/1:31:0,31,0:0:0:31,0:1103,0:-99.3185,-9.33193,0,-99.3185,-9.33193,-99.3185	1/1:124:0,124,0:0:0:124,0:4460,0:-401.192,-37.3277,0,-401.192,-37.3277,-401.192	1/1:149:0,149,0:0:0:149,0:5325,0:-477.566,-44.8535,0,-477.566,-44.8535,-477.566	1/2:86:0,57,28:0:0:57,28:2030,959:-241.19,-76.43,-59.2713,-164.764,0,-156.335	1/1:3:0,3,0:0:0:3,0:108,0:-10.0609,-0.90309,0,-10.0609,-0.90309,-10.0609	1/2:11:0,10,1:0:0:10,1:360,34:-32.3435,-3.08202,-0.0717223,-29.6017,0,-29.3006	1/2:2:0,1,1:0:0:1,1:36,27:-5.28042,-2.30182,-2.00079,-3.2882,0,-2.98717	1/2:12:0,5,7:0:0:5,7:180,243:-34.5297,-19.8826,-18.3774,-14.9996,0,-12.8924	1/1:10:0,10,0:0:0:10,0:351,0:-31.733,-3.0103,0,-31.733,-3.0103,-31.733	1/2:189:0,89,100:0:0:89,100:3184,3495:-542.54,-283.169,-256.377,-259.724,0,-229.621	1/2:214:0,139,73:0:0:139,73:4988,2491:-605.221,-199.862,-158.019,-405.406,0,-383.431	1/2:63:0,27,35:0:0:27,35:951,1209:-173.808,-97.2107,-89.0829,-76.6082,0,-66.0721	1/2:2:0,1,1:0:0:1,1:36,36:-6.16379,-3.2724,-2.97137,-3.24749,0,-2.94646	1/2:135:0,58,76:0:0:58,76:2065,2676:-384.255,-216.235,-198.775,-168.063,0,-145.185	1/1:25:0,25,0:0:0:25,0:896,0:-80.6895,-7.52575,0,-80.6895,-7.52575,-80.6895	1/1:140:0,139,0:0:0:139,0:4944,0:-443.22,-41.8432,0,-443.22,-41.8432,-443.22	1/1:58:0,58,0:0:0:58,0:2080,0:-186.711,-17.4597,0,-186.711,-17.4597,-186.711	1/1:31:0,31,0:0:0:31,0:1112,0:-100.318,-9.33193,0,-100.318,-9.33193,-100.318	1/1:78:0,78,0:0:0:78,0:2796,0:-251.647,-23.4803,0,-251.647,-23.4803,-251.647	1/2:106:0,58,48:0:0:58,48:2080,1686:-304.823,-135.648,-118.188,-169.527,0,-155.077	1/2:134:0,61,73:0:0:61,73:2192,2479:-378.907,-200.316,-181.953,-178.941,0,-156.966	1/1:172:0,171,0:0:0:171,0:6117,0:-548.854,-51.4761,0,-548.854,-51.4761,-548.854	1/2:169:0,74,93:0:0:74,93:2656,3279:-480.775,-265.113,-242.837,-215.714,0,-187.718	1/1:115:0,114,1:0:0:114,1:4063,36:-364.127,-34.3174,0,-361.68,-31.5639,-361.379	1/1:7:0,7,0:0:0:7,0:252,0:-23.0124,-2.10721,0,-23.0124,-2.10721,-23.0124	1/2:138:0,62,76:0:0:62,76:2228,2659:-393.331,-212.614,-193.95,-181.068,0,-158.19	1/1:113:0,112,0:0:0:112,0:4003,0:-359.456,-33.7154,0,-359.456,-33.7154,-359.456	1/1:12:0,12,0:0:0:12,0:432,0:-39.1226,-3.61236,0,-39.1226,-3.61236,-39.1226	1/1:115:0,114,0:0:0:114,0:4074,0:-365.06,-34.3174,0,-365.06,-34.3174,-365.06	1/1:40:0,40,0:0:0:40,0:1440,0:-129.634,-12.0412,0,-129.634,-12.0412,-1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chr01	2671514	.	G	A	97545.1	PASS	AB=0.437221;ABP=102.527;AC=148;AF=0.787234;AN=188;AO=4373;CIGAR=1X;DP=6019;DPB=6019;DPRA=0;EPP=8248.76;EPPR=3184.54;GTI=4;LEN=1;MEANALT=1.02128;MQM=59.9531;MQMR=60;NS=94;NUMALT=1;ODDS=0.41016;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156533;QR=58816;RO=1644;RPL=140;RPP=8321.77;RPPR=3200.96;RPR=4233;RUN=1;SAF=4364;SAP=9420.85;SAR=9;SRF=1642;SRP=3555.56;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:58:25,33:25:896:33:1188:-89.7689,0,-63.5006	1/1:115:0,115:0:0:115:4122:-371.146,-34.6185,0	1/1:69:1,68:1:36:68:2431:-215.447,-17.1728,0	1/1:54:0,54:0:0:54:1929:-173.879,-16.2556,0	1/1:30:0,30:0:0:30:1061:-95.7991,-9.0309,0	1/1:55:0,55:0:0:55:1950:-175.769,-16.5567,0	1/1:97:0,97:0:0:97:3465:-312.06,-29.1999,0	0/1:78:44,33:44:1557:33:1184:-83.3292,0,-116.881	1/1:44:0,44:0:0:44:1556:-140.329,-13.2453,0	1/1:23:0,23:0:0:23:821:-74.2123,-6.92369,0	0/1:47:23,24:23:824:24:864:-63.9342,0,-60.3349	0/1:45:18,27:18:644:27:972:-74.2516,0,-44.7442	1/1:54:0,54:0:0:54:1935:-174.426,-16.2556,0	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	1/1:30:0,30:0:0:30:1064:-96.07,-9.0309,0	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:72:0,72:0:0:72:2573:-231.818,-21.6742,0	0/1:75:43,32:43:1532:32:1148:-81.0526,0,-115.596	0/1:110:76,34:76:2689:34:1220:-76.9935,0,-209.139	1/1:115:0,115:0:0:115:4112:-370.265,-34.6185,0	0/1:74:46,27:46:1622:27:968:-65.1024,0,-123.93	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	1/1:188:0,188:0:0:188:6709:-603.876,-56.5936,0	0/1:169:94,75:94:3376:75:2679:-190.48,0,-253.181	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:120:0,120:0:0:120:4283:-385.647,-36.1236,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:77:47,30:47:1669:30:1080:-74.3339,0,-127.316	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:94:49,45:49:1752:45:1616:-117.433,0,-129.667	0/1:159:79,80:79:2836:80:2846:-208.512,0,-207.614	0/1:20:9,11:9:320:11:396:-29.9621,0,-23.1218	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:126:82,44:82:2952:44:1580:-104.562,0,-227.983	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:77:0,77:0:0:77:2754:-248.102,-23.1793,0	1/1:25:0,25:0:0:25:892:-80.5991,-7.52575,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:109:0,109:0:0:109:3887:-350.023,-32.8123,0	0/1:116:72,44:72:2584:44:1580:-107.572,0,-197.889	0/1:99:61,38:61:2187:38:1364:-93.2587,0,-167.293	1/1:106:1,105:1:36:105:3768:-335.719,-28.3109,0	0/1:75:55,20:55:1972:20:712:-41.8138,0,-155.178	1/1:97:0,97:0:0:97:3455:-311.103,-29.1999,0	1/1:15:1,14:1:36:14:504:-42.0998,-0.917175,0	0/1:210:124,86:124:4444:86:3092:-215.29,0,-336.914	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:108:0,108:0:0:108:3870:-348.443,-32.5112,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:20:16,4:16:572:4:144:-7.29302,0,-45.7928	1/1:66:0,66:0:0:66:2361:-212.747,-19.868,0	0/1:72:33,39:33:1163:39:1404:-104.985,0,-83.302	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:123:0,123:0:0:123:4392:-395.454,-37.0267,0	0/1:85:53,32:53:1900:32:1152:-78.4026,0,-145.69	0/1:41:7,34:7:252:34:1216:-97.4043,0,-10.6867	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:136:0,136:0:0:136:4861:-437.642,-40.9401,0	1/1:120:0,120:0:0:120:4287:-386.005,-36.1236,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:39:0,39:0:0:39:1390:-125.398,-11.7402,0	0/1:41:20,21:20:720:21:756:-56.025,0,-52.7865	0/1:22:9,13:9:320:13:468:-35.837,0,-22.5197	0/1:132:69,63:69:2472:63:2253:-163.295,0,-182.998	0/1:58:36,22:36:1296:22:792:-54.1459,0,-99.4842	1/1:107:1,106:1:36:106:3780:-336.799,-28.6119,0	0/1:106:69,37:69:2472:37:1332:-88.2732,0,-190.825	0/1:121:68,53:68:2436:53:1908:-135.573,0,-183.071	1/1:37:2,35:2:72:35:1237:-104.749,-4.30139,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:67:2,65:2:72:65:2320:-202.224,-13.3323,0	0/1:83:47,36:47:1665:36:1288:-91.2381,0,-125.15	0/1:167:85,82:85:3052:82:2942:-214.741,0,-224.637	0/1:43:24,19:24:864:19:680:-48.5849,0,-65.1383	0/1:35:16,19:16:572:19:684:-51.3543,0,-41.2774	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/1:47:22,25:22:788:25:900:-67.1726,0,-57.0964	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:72:44,28:44:1576:28:1008:-69.3622,0,-120.457	0/1:25:18,7:18:648:7:252:-15.5032,0,-51.1261	1/1:98:0,98:0:0:98:3524:-317.368,-29.5009,0	1/1:46:2,44:2:72:44:1571:-134.686,-7.01066,0
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chr01	2722879	.	G	A	70604.3	PASS	AB=0.486556;ABP=13.4032;AC=40;AF=0.212766;AN=188;AO=3245;CIGAR=1X;DP=15043;DPB=15043;DPRA=1.26147;EPP=7014.74;EPPR=25587.3;GTI=1;LEN=1;MEANALT=1.07692;MQM=59.7002;MQMR=59.9636;NS=94;NUMALT=1;ODDS=1.54253;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112737;QR=413909;RO=11790;RPL=1589;RPP=6.01423;RPPR=392.386;RPR=1656;RUN=1;SAF=1587;SAP=6.38361;SAR=1658;SRF=6620;SRP=390.247;SRR=5170;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:62,0:62:2155:0:0:0,-18.6639,-194.215	0/1:154:81,73:81:2869:73:2584:-186.44,0,-212.087	0/0:211:211,0:211:7440:0:0:0,-63.5173,-669.647	0/0:352:352,0:352:12400:0:0:0,-105.963,-1115.83	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/0:222:222,0:222:7831:0:0:0,-66.8287,-704.727	0/0:203:203,0:203:7167:0:0:0,-61.1091,-645.024	0/1:206:103,103:103:3542:103:3617:-263.71,0,-256.977	0/0:185:185,0:185:6519:0:0:0,-55.6905,-586.793	0/0:161:161,0:161:5572:0:0:0,-48.4658,-501.614	0/1:258:146,112:146:5044:112:3859:-269.569,0,-376.405	0/1:197:112,85:112:3874:85:2829:-195.521,0,-289.556	0/0:182:182,0:182:6316:0:0:0,-54.7875,-568.51	0/1:177:102,75:102:3588:75:2592:-180.242,0,-269.835	0/0:162:162,0:162:5667:0:0:0,-48.7669,-510.16	0/0:114:114,0:114:4031:0:0:0,-34.3174,-362.98	0/1:101:49,52:49:1713:52:1815:-133.199,0,-124.046	0/0:110:110,0:110:3849:0:0:0,-33.1133,-346.607	0/0:210:210,0:210:7460:0:0:0,-63.2163,-671.447	0/1:274:143,130:143:4992:130:4590:-329.653,0,-366.891	0/1:95:32,63:32:1122:63:2185:-168.314,0,-72.6885	0/0:213:211,2:211:7456:2:72:0,-57.2827,-664.253	0/1:137:68,69:68:2400:69:2432:-177.893,0,-175.015	0/0:109:109,0:109:3816:0:0:0,-32.8123,-343.638	0/0:344:342,2:342:12001:2:72:0,-96.7176,-1073.12	0/1:306:162,144:162:5634:144:5011:-359.019,0,-414.939	0/0:80:80,0:80:2837:0:0:0,-24.0824,-255.568	0/0:409:407,0:407:14462:0:0:0,-122.519,-1300.98	0/0:209:208,1:208:7253:1:36:0,-59.317,-649.236	0/1:208:100,108:100:3492:108:3812:-280.647,0,-251.877	0/1:21:19,2:19:680:2:68:-0.136079,0,-55.2075	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:7:2,5:2:72:5:167:-13.2429,0,-4.72951	0/1:12:10,2:10:348:2:72:-3.22436,0,-28.0428	0/0:35:35,0:35:1235:0:0:0,-10.536,-111.453	0/1:346:175,171:175:6084:171:5876:-424.798,0,-443.516	0/1:135:69,65:69:2380:65:2273:-164.088,0,-173.756	0/1:141:72,69:72:2490:69:2410:-174.701,0,-181.908	0/1:8:5,3:5:176:3:93:-6.26849,0,-13.7768	0/1:259:149,110:149:5250:110:3827:-266.529,0,-394.543	0/0:97:97,0:97:3374:0:0:0,-29.1999,-303.877	0/0:181:180,1:180:6325:1:36:0,-50.8882,-565.755	0/0:170:170,0:170:5927:0:0:0,-51.1751,-533.548	0/0:139:139,0:139:4848:0:0:0,-41.8432,-436.48	0/0:179:178,1:178:6243:1:36:0,-50.2861,-558.371	0/1:133:66,67:66:2347:67:2311:-168.198,0,-171.452	0/1:297:178,119:178:6292:119:4076:-277.613,0,-476.97	0/0:155:155,0:155:5442:0:0:0,-46.6596,-489.913	0/1:186:95,91:95:3355:91:3211:-233.215,0,-246.176	0/0:138:138,0:138:4891:0:0:0,-41.5421,-440.34	0/0:11:11,0:11:366:0:0:0,-3.31133,-33.2585	0/1:176:82,94:82:2845:94:3280:-242.392,0,-203.301	0/0:126:126,0:126:4410:0:0:0,-37.9298,-397.076	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.916	0/0:201:201,0:201:7006:0:0:0,-60.507,-630.613	0/0:77:77,0:77:2726:0:0:0,-23.1793,-245.584	0/0:30:30,0:30:1048:0:0:0,-9.0309,-94.6273	0/1:25:18,7:18:648:7:248:-15.1384,0,-51.1261	0/0:189:189,0:189:6648:0:0:0,-56.8947,-598.403	0/0:180:178,2:178:6272:2:72:0,-47.3487,-557.743	0/0:15:15,0:15:513:0:0:0,-4.51545,-46.4929	0/0:239:238,1:238:8397:1:36:0,-68.3479,-752.133	0/1:273:146,127:146:5194:127:4453:-318.756,0,-385.418	0/0:169:165,4:165:5820:4:144:0,-37.5604,-510.553	0/0:122:120,0:120:4196:0:0:0,-36.1236,-377.523	0/0:259:259,0:259:9149:0:0:0,-77.9668,-823.391	0/0:198:195,3:195:6906:3:108:0,-49.5312,-611.541	0/0:123:123,0:123:4255:0:0:0,-37.0267,-383.129	0/0:74:74,0:74:2603:0:0:0,-22.2762,-234.517	0/1:96:45,50:45:1599:50:1740:-128.061,0,-115.378	0/1:54:32,22:32:1126:22:737:-50.3832,0,-85.3047	0/1:112:56,56:56:1989:56:1960:-142.959,0,-145.376	0/1:163:77,86:77:2692:86:3047:-225.345,0,-193.455	0/0:281:277,4:277:9788:4:136:0,-72.0139,-868.243	0/1:285:113,172:113:4017:172:5996:-453.914,0,-275.926	0/1:58:21,37:21:744:37:1299:-99.7351,0,-49.8246	0/0:186:184,2:184:6399:2:72:0,-49.1634,-568.911	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.895	0/0:198:198,0:198:6933:0:0:0,-59.6039,-624.042	0/1:166:87,79:87:3069:79:2649:-188.667,0,-226.469	0/1:378:190,188:190:6717:188:6582:-478.654,0,-490.82	0/1:100:57,43:57:2006:43:1485:-103.833,0,-150.71	0/1:187:84,103:84:2947:103:3604:-268.255,0,-209.144	0/1:126:60,66:60:2082:66:2245:-164.318,0,-149.718	0/1:318:164,154:164:5729:154:5342:-385.182,0,-420.007	0/1:56:35,21:35:1206:21:718:-48.078,0,-91.9808	0/0:172:170,1:170:5910:1:36:0,-48.2177,-528.441	0/0:196:196,0:196:6861:0:0:0,-59.0019,-617.566	0/0:172:172,0:172:5963:0:0:0,-51.7772,-536.788	0/1:226:128,98:128:4384:98:3435:-241.323,0,-326.706	0/1:163:63,100:63:2231:100:3351:-252.732,0,-151.986	0/0:159:159,0:159:5640:0:0:0,-47.8638,-507.722	0/0:271:271,0:271:9531:0:0:0,-81.5791,-857.764
chr01	2722891	.	G	T	82091.8	PASS	AB=0.513218;ABP=13.5731;AC=39;AF=0.207447;AN=188;AO=3597;CIGAR=1X;DP=15427;DPB=15427;DPRA=1.29057;EPP=7787.76;EPPR=25652.5;GTI=1;LEN=1;MEANALT=1;MQM=59.6706;MQMR=59.9604;NS=94;NUMALT=1;ODDS=0.526729;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128122;QR=417836;RO=11828;RPL=1933;RPP=46.6939;RPPR=359.764;RPR=1664;RUN=1;SAF=1930;SAP=44.7669;SAR=1667;SRF=6607;SRP=355.681;SRR=5221;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:62,0:62:2189:0:0:0,-18.6639,-197.274	0/1:154:80,74:80:2817:74:2644:-191.838,0,-207.412	0/0:208:208,0:208:7343:0:0:0,-62.6142,-660.922	0/0:343:343,0:343:12168:0:0:0,-103.253,-1094.97	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8767	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:219:219,0:219:7763:0:0:0,-65.9256,-698.62	0/0:201:201,0:201:7033:0:0:0,-60.507,-632.419	0/1:214:104,110:104:3662:110:3926:-289.096,0,-265.365	0/0:180:180,0:180:6366:0:0:0,-54.1854,-573.034	0/0:159:159,0:159:5573:0:0:0,-47.8638,-501.698	0/1:271:150,121:150:5252:121:4312:-306.644,0,-391.141	0/1:206:112,94:112:3957:94:3335:-238.319,0,-294.306	0/0:182:182,0:182:6415:0:0:0,-54.7875,-577.445	0/1:192:99,93:99:3531:93:3315:-240.761,0,-260.114	0/0:163:162,0:162:5701:0:0:0,-48.7669,-512.856	0/0:121:121,0:121:4263:0:0:0,-36.4246,-383.359	0/1:102:48,54:48:1668:54:1918:-142.175,0,-119.696	0/0:111:111,0:111:3932:0:0:0,-33.4143,-354.074	0/0:215:215,0:215:7681:0:0:0,-64.7214,-691.325	0/1:278:141,137:141:4929:137:4841:-351.079,0,-360.078	0/1:116:36,80:36:1292:80:2860:-222.704,0,-81.6643	0/0:214:210,4:210:7457:4:140:0,-51.4758,-658.231	0/1:140:70,70:70:2491:70:2516:-183.917,0,-182.299	0/0:110:110,0:110:3892:0:0:0,-33.1133,-350.476	0/0:342:340,2:340:12047:2:72:0,-96.1155,-1077.25	0/1:332:165,167:165:5804:167:5943:-435.027,0,-422.402	0/0:84:84,0:84:2956:0:0:0,-25.2865,-266.274	0/0:407:407,0:407:14345:0:0:0,-122.519,-1290.82	0/0:212:212,0:212:7481:0:0:0,-63.8184,-673.338	0/1:215:103,112:103:3612:112:3996:-295.021,0,-260.563	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:8:2,6:2:68:6:216:-17.374,0,-4.04947	0/1:13:11,2:11:383:2:72:-2.92333,0,-30.8899	0/0:34:33,1:33:1145:1:36:0,-6.63674,-99.7526	0/1:381:179,202:179:6305:202:7170:-530.653,0,-452.854	0/1:137:67,70:67:2336:70:2473:-181.569,0,-169.255	0/1:145:70,75:70:2474:75:2665:-196.428,0,-179.264	0/1:7:5,2:5:172:2:72:-4.72951,0,-13.7108	0/1:277:147,130:147:5272:130:4649:-335.04,0,-391.1	0/0:101:100,0:100:3514:0:0:0,-30.103,-316.112	0/0:183:182,1:182:6390:1:36:0,-51.4902,-571.106	0/0:165:165,0:165:5801:0:0:0,-49.6699,-522.207	0/0:138:138,0:138:4880:0:0:0,-41.5421,-439.357	0/0:177:177,0:177:6289:0:0:0,-53.2823,-566.104	0/1:137:66,71:66:2339:71:2535:-187.149,0,-169.529	0/1:314:179,135:179:6306:135:4797:-337.35,0,-473.116	0/0:153:153,0:153:5430:0:0:0,-46.0576,-488.829	0/1:195:97,98:97:3412:98:3520:-258.212,0,-248.593	0/0:136:136,0:136:4819:0:0:0,-40.9401,-433.809	0/0:11:11,0:11:380:0:0:0,-3.31133,-34.532	0/1:181:79,102:79:2820:102:3659:-274.979,0,-199.553	0/0:130:129,1:129:4594:1:36:0,-35.5356,-410.027	0/0:33:33,0:33:1120:0:0:0,-9.93399,-101.096	0/0:198:198,0:198:6987:0:0:0,-59.6039,-628.897	0/0:77:77,0:77:2735:0:0:0,-23.1793,-246.393	0/0:30:30,0:30:1048:0:0:0,-9.0309,-94.6273	0/1:26:17,9:17:608:9:320:-21.3156,0,-47.2252	0/0:190:190,0:190:6699:0:0:0,-57.1957,-602.991	0/0:190:188,2:188:6627:2:72:0,-50.359,-589.677	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:241:241,0:241:8530:0:0:0,-72.5482,-767.704	0/1:285:145,140:145:5174:140:5016:-365.783,0,-380.007	0/0:173:168,5:168:5960:5:180:0,-35.5261,-519.419	0/0:120:120,0:120:4228:0:0:0,-36.1236,-380.702	0/0:263:261,2:261:9192:2:72:0,-72.3342,-820.424	0/0:199:196,3:196:6921:3:108:0,-49.8322,-612.889	0/0:125:125,0:125:4395:0:0:0,-37.6287,-395.728	0/0:72:72,0:72:2548:0:0:0,-21.6742,-229.569	0/1:99:44,55:44:1572:55:1944:-145.407,0,-111.969	0/1:54:31,23:31:1112:23:815:-57.4151,0,-84.1357	0/1:117:54,63:54:1912:63:2252:-167.722,0,-137.137	0/1:163:74,89:74:2604:89:3166:-236.041,0,-185.54	0/0:286:285,1:285:10025:1:36:0,-82.4963,-898.6	0/1:305:114,191:114:4042:191:6796:-519.86,0,-272.156	0/1:60:21,39:21:735:39:1389:-106.968,0,-48.4096	0/0:186:184,2:184:6491:2:72:0,-49.1634,-577.176	0/0:30:30,0:30:1046:0:0:0,-9.0309,-94.4321	0/0:194:194,0:194:6881:0:0:0,-58.3998,-619.362	0/1:176:86,90:86:3071:90:3207:-235.857,0,-223.637	0/1:403:191,212:191:6754:212:7564:-559.366,0,-486.623	0/1:110:61,49:61:2142:49:1738:-123.58,0,-159.934	0/1:197:83,114:83:2929:114:4070:-307.163,0,-204.514	0/1:143:63,80:63:2219:80:2860:-214.525,0,-156.928	0/1:342:170,172:170:5971:172:6122:-448.064,0,-434.552	0/1:57:35,22:35:1234:22:792:-54.4466,0,-94.2039	0/0:171:170,1:170:6004:1:36:0,-47.8779,-536.875	0/0:198:198,0:198:7030:0:0:0,-59.6039,-632.765	0/0:173:173,0:173:6086:0:0:0,-52.0782,-547.849	0/1:232:126,106:126:4389:106:3769:-269.559,0,-325.347	0/1:176:63,113:63:2244:113:3972:-304.59,0,-149.243	0/0:168:168,0:168:5978:0:0:0,-50.573,-538.128	0/0:277:277,0:277:9837:0:0:0,-83.3853,-885.281
chr01	2783400	.	AACT	AACC,TACC	257969	PASS	AB=0.494467,0.503592;ABP=4.37996,3.58742;AC=149,39;AF=0.792553,0.207447;AN=188;AO=9320,2609;CIGAR=3M1X,1X2M1X;DP=11962;DPB=11962;DPRA=0,1.17057;EPP=20241.1,5668.38;EPPR=11.6962;GTI=0;LEN=1,4;MEANALT=1.76596,2.21277;MQM=59.9675,59.8206;MQMR=60;NS=94;NUMALT=2;ODDS=0.413663;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=332354,92332;QR=136;RO=4;RPL=9320,2609;RPP=20241.1,5668.38;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=20241.1,5668.38;SAR=9320,2609;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/2:253:0,144,109:0:0:144,109:5114,3817:-727.572,-310.871,-267.523,-417.053,0,-384.24	1/1:146:0,145,0:0:0:145,0:5185,0:-466.518,-43.6494,0,-466.518,-43.6494,-466.518	1/1:284:0,282,1:0:0:282,1:10044,36:-903.479,-84.8905,0,-900.542,-81.953,-900.24	1/1:97:0,97,0:0:0:97,0:3473,0:-312.735,-29.1999,0,-312.735,-29.1999,-312.735	1/1:86:0,86,0:0:0:86,0:3047,0:-274.386,-25.8886,0,-274.386,-25.8886,-274.386	1/1:214:0,213,0:0:0:213,0:7617,0:-685.356,-64.1194,0,-685.356,-64.1194,-685.356	1/1:298:0,295,2:0:0:295,2:10534,70:-947.622,-88.8039,0,-941.933,-83.1217,-941.331	1/2:103:0,58,45:0:0:58,45:2069,1579:-297.516,-128.85,-111.39,-169.019,0,-155.473	1/1:181:0,180,0:0:0:180,0:6349,0:-571.211,-54.1854,0,-571.211,-54.1854,-571.211	1/1:54:0,53,1:0:0:53,1:1866,35:-167.866,-15.9546,0,-165.018,-12.757,-164.717	1/2:73:0,31,42:0:0:31,42:1093,1487:-210.471,-121.478,-112.146,-89.3457,0,-76.7025	1/2:65:0,32,33:0:0:32,33:1148,1173:-189.581,-95.9412,-86.3082,-93.9969,0,-84.0629	1/1:83:0,82,0:0:0:82,0:2914,0:-262.241,-24.6845,0,-262.241,-24.6845,-262.241	1/2:68:0,42,26:0:0:42,26:1504,928:-198.666,-76.0114,-63.3682,-123.011,0,-115.185	1/1:55:0,55,0:0:0:55,0:1976,0:-178.115,-16.5567,0,-178.115,-16.5567,-178.115	1/1:93:0,93,0:0:0:93,0:3311,0:-298.209,-27.9958,0,-298.209,-27.9958,-298.209	1/2:83:0,42,39:0:0:42,39:1504,1383:-235.323,-112.668,-100.024,-122.652,0,-110.911	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/1:251:0,251,0:0:0:251,0:8997,0:-809.694,-75.5585,0,-809.694,-75.5585,-809.694	1/2:224:1,98,125:1:35:98,125:3501,4443:-644.359,-359.218,-332.565,-282.601,0,-247.82	1/2:131:0,46,84:0:0:46,84:1640,2976:-376.101,-242.427,-228.579,-133.67,0,-108.383	1/1:200:0,199,1:0:0:199,1:7131,36:-640.709,-59.905,0,-637.772,-56.6077,-637.471	1/2:212:0,111,100:0:0:111,100:3935,3538:-608.83,-288.257,-254.842,-320.656,0,-290.553	1/1:77:0,77,0:0:0:77,0:2768,0:-249.361,-23.1793,0,-249.361,-23.1793,-249.361	1/1:406:1,405,0:1:29:405,0:14402,0:-1293.02,-119.319,0,-1293.32,-121.917,-1295.63	1/2:174:0,98,75:0:0:98,75:3480,2653:-499.702,-216.145,-186.644,-283.63,0,-261.052	1/1:45:0,45,0:0:0:45,0:1597,0:-144.018,-13.5464,0,-144.018,-13.5464,-144.018	1/1:337:0,336,0:0:0:336,0:11978,0:-1077.51,-101.146,0,-1077.51,-101.146,-1077.51	1/1:190:0,190,0:0:0:190,0:6797,0:-611.799,-57.1957,0,-611.799,-57.1957,-611.799	1/2:227:0,125,102:0:0:125,102:4449,3569:-653.313,-290.714,-253.085,-362.951,0,-332.246	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/2:5:0,2,3:0:0:2,3:72,97:-14.0366,-8.1471,-7.54504,-6.23466,0,-5.33157	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:158:0,75,83:0:0:75,83:2692,2948:-460.158,-240.568,-217.991,-219.947,0,-194.961	1/2:260:0,113,147:0:0:113,147:4044,5164:-750.328,-420.551,-386.535,-330.131,0,-285.88	1/2:54:0,30,24:0:0:30,24:1065,857:-156.998,-70.2255,-61.1946,-87.1289,0,-79.9041	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:253:0,140,112:0:0:140,112:4990,3963:-729.654,-322.906,-280.762,-406.863,0,-373.147	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:144:0,144,0:0:0:144,0:5105,0:-459.589,-43.3483,0,-459.589,-43.3483,-459.589	1/1:153:0,153,0:0:0:153,0:5456,0:-491.164,-46.0576,0,-491.164,-46.0576,-491.164	1/1:54:0,54,0:0:0:54,0:1925,0:-173.525,-16.2556,0,-173.525,-16.2556,-173.525	1/1:135:0,133,0:0:0:133,0:4711,0:-423.893,-40.037,0,-423.893,-40.037,-423.893	1/2:194:0,101,93:0:0:101,93:3624,3254:-560.619,-265.013,-234.609,-295.961,0,-267.965	1/2:219:0,95,124:0:0:95,124:3404,4357:-632.602,-354.981,-326.383,-277.977,0,-240.649	1/1:139:1,138,0:1:36:138,0:4932,0:-440.433,-38.2449,0,-440.734,-41.5421,-443.672	1/2:217:0,98,119:0:0:98,119:3497,4250:-631.911,-346.829,-317.328,-285.439,0,-249.616	1/1:167:0,167,0:0:0:167,0:5951,0:-535.695,-50.272,0,-535.695,-50.272,-535.695	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:152:0,65,87:0:0:65,87:2317,3110:-442.801,-253.937,-234.37,-189.221,0,-163.032	1/1:51:0,51,0:0:0:51,0:1813,0:-163.445,-15.3525,0,-163.445,-15.3525,-163.445	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:178:0,176,0:0:0:176,0:6236,0:-560.987,-52.9813,0,-560.987,-52.9813,-560.987	1/1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chr01	2811591	.	A	G	32756.7	PASS	AB=0.536286;ABP=43.0374;AC=41;AF=0.22043;AN=186;AO=1904;CIGAR=1X;DP=6803;DPB=6803;DPRA=1.61766;EPP=4137.49;EPPR=10636.7;GTI=4;LEN=1;MEANALT=1.04762;MQM=59.9842;MQMR=59.9926;NS=93;NUMALT=1;ODDS=0.445211;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68248;QR=175743;RO=4897;RPL=1904;RPP=4137.49;RPPR=10636.7;RPR=0;RUN=1;SAF=0;SAP=4137.49;SAR=1904;SRF=0;SRP=10636.7;SRR=4897;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:71:34,37:34:1220:37:1324:-98.089,0,-88.7337	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.261	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/1:71:19,52:19:684:52:1868:-147.012,0,-40.5172	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/1:89:47,42:47:1688:42:1508:-109.223,0,-125.415	0/1:106:56,50:56:2012:50:1787:-129.203,0,-149.444	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/1:76:40,36:40:1436:36:1287:-93.2545,0,-106.659	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.037	0/1:82:40,42:40:1440:42:1512:-111.69,0,-105.213	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:135:52,83:52:1868:83:2984:-228.152,0,-127.76	0/1:56:15,41:15:536:41:1472:-115.918,0,-31.7171	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:17:7,10:7:252:10:360:-27.6129,0,-17.9114	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:217:217,0:217:7776:0:0:0,-65.3235,-699.87	0/1:147:79,68:79:2832:68:2432:-174.884,0,-210.867	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.784	0/0:209:209,0:209:7500:0:0:0,-62.9153,-675.04	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:84:35,49:35:1252:49:1762:-133.577,0,-87.6986	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	1/1:3:0,3:0:0:3:108:-10.0667,-0.90309,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:279:147,132:147:5276:132:4728:-341.691,0,-390.987	0/1:152:66,85:66:2356:85:3044:-228.522,0,-166.631	0/1:80:39,41:39:1404:41:1472:-108.694,0,-102.577	.:.:.:.:.:.:.:.	0/1:53:27,26:27:972:26:924:-67.5231,0,-71.8433	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.472	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:97:97,0:97:3479:0:0:0,-29.1999,-313.32	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/0:62:60,2:60:2156:2:72:0,-11.8271,-187.47	0/1:82:35,47:35:1260:47:1688:-127.522,0,-89.021	0/1:86:32,54:32:1137:54:1936:-148.628,0,-76.7484	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/1:109:42,67:42:1504:67:2412:-184.524,0,-102.842	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:85:38,47:38:1368:47:1692:-126.979,0,-97.8333	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:167:166,1:166:5968:1:36:0,-46.6737,-533.625	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.92	0/1:110:35,75:35:1256:75:2679:-208.241,0,-80.232	0/0:47:46,1:46:1652:1:36:0,-10.5501,-145.37	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:90:87,3:87:3116:3:108:0,-17.0175,-270.591	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:106:65,41:65:2336:41:1472:-100.867,0,-178.59	0/1:10:4,6:4:144:6:210:-16.2317,0,-10.3033	0/1:97:39,58:39:1392:58:2076:-157.911,0,-96.3791	0/1:45:27,18:27:968:18:640:-44.383,0,-73.891	0/0:88:88,0:88:3168:0:0:0,-26.4906,-285.343	0/1:83:34,49:34:1224:49:1764:-134.058,0,-85.4816	0/1:111:36,74:36:1281:74:2656:-205.813,0,-82.1183	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:76:39,37:39:1396:37:1328:-96.944,0,-103.061	0/1:112:53,59:53:1904:59:2116:-156.993,0,-137.922	0/1:132:69,63:69:2480:63:2236:-161.767,0,-183.712	0/1:93:53,40:53:1900:40:1436:-101.542,0,-143.282	0/1:139:67,72:67:2404:72:2592:-191.685,0,-174.773	0/1:225:126,99:126:4532:99:3533:-250.447,0,-340.313	0/1:85:48,37:48:1728:37:1332:-94.5948,0,-130.218	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.276	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.628	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:120:50,70:50:1796:70:2494:-188.588,0,-125.799	0/1:96:26,70:26:936:70:2520:-198.152,0,-55.6606	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:133:133,0:133:4780:0:0:0,-40.037,-430.355
chr01	2837160	.	C	T	23557.1	PASS	AB=0.502882;ABP=3.21055;AC=39;AF=0.209677;AN=186;AO=1398;CIGAR=1X;DP=6207;DPB=6207;DPRA=1.1111;EPP=3038.73;EPPR=10419.6;GTI=0;LEN=1;MEANALT=1.1;MQM=59.985;MQMR=60;NS=93;NUMALT=1;ODDS=2.83018;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50111;QR=171415;RO=4801;RPL=0;RPP=3038.73;RPPR=10428.2;RPR=1398;RUN=1;SAF=0;SAP=3038.73;SAR=1398;SRF=1;SRP=10419.6;SRR=4800;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:45:19,26:19:684:26:925:-70.0203,0,-48.344	0/0:117:117,0:117:4172:0:0:0,-35.2205,-375.661	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:122:122,0:122:4356:0:0:0,-36.7257,-392.216	0/1:92:36,56:36:1292:56:2004:-152.938,0,-88.889	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/1:84:40,44:40:1432:44:1584:-117.557,0,-103.891	0/1:51:27,23:27:972:23:828:-59.4328,0,-72.3866	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/1:54:29,25:29:1040:25:900:-65.0654,0,-77.6587	0/0:56:56,0:56:1955:0:0:0,-16.8577,-176.22	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:98:98,0:98:3510:0:0:0,-29.5009,-316.109	0/1:87:44,43:44:1565:43:1544:-113.063,0,-114.95	0/1:105:30,75:30:1080:75:2692:-210.916,0,-65.9051	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/1:43:20,23:20:712:23:823:-61.4487,0,-51.4624	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:182:181,0:181:6478:0:0:0,-54.4864,-582.744	0/1:173:94,79:94:3326:79:2832:-203.04,0,-247.479	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:152:152,0:152:5444:0:0:0,-45.7566,-490.089	0/0:52:52,0:52:1826:0:0:0,-15.6536,-164.617	0/1:53:34,19:34:1220:19:684:-45.9357,0,-94.1522	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:6:3,3:3:104:3:104:-7.89663,0,-7.89663	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:165:79,86:79:2819:86:3081:-227.847,0,-204.279	0/1:128:63,64:63:2260:64:2294:-168.123,0,-165.072	0/1:30:15,15:15:532:15:537:-39.6344,0,-39.1822	0/1:6:4,2:4:136:2:72:-5.03054,0,-10.7694	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:158:158,0:158:5649:0:0:0,-47.5627,-508.529	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.123	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:102:102,0:102:3638:0:0:0,-30.7051,-327.622	0/1:90:42,46:42:1512:46:1652:-122.118,0,-109.524	0/1:118:64,54:64:2291:54:1929:-138.363,0,-170.929	0/0:71:71,0:71:2508:0:0:0,-21.3731,-225.971	0/1:62:40,22:40:1417:22:792:-52.9418,0,-109.161	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:65:31,34:31:1104:34:1216:-90.1796,0,-80.1037	0/0:93:93,0:93:3329:0:0:0,-27.9958,-299.826	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:58:58,0:58:2079:0:0:0,-17.4597,-187.38	0/0:126:126,0:126:4499:0:0:0,-37.9298,-405.079	.:.:.:.:.:.:.:.	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/1:127:72,55:72:2588:55:1961:-138.533,0,-194.938	0/0:55:53,2:53:1870:2:72:0,-9.71993,-161.739	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/0:171:170,0:170:6038:0:0:0,-51.1751,-543.164	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.784	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:78:31,47:31:1096:47:1673:-127.375,0,-75.4696	0/1:81:48,32:48:1709:32:1148:-79.3426,0,-129.808	0/0:139:139,0:139:4980:0:0:0,-41.8432,-448.348	0/1:98:57,41:57:2048:41:1476:-103.635,0,-155.091	0/1:91:46,45:46:1656:45:1620:-118.696,0,-121.935	0/0:61:60,0:60:2156:0:0:0,-18.0618,-193.947	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:83:51,32:51:1832:32:1152:-79.0047,0,-140.175	0/1:248:129,119:129:4608:119:4256:-308.564,0,-340.23	0/1:86:36,50:36:1273:50:1788:-135.314,0,-88.9823	0/1:43:27,16:27:968:16:576:-39.2307,0,-74.4931	0/1:30:12,18:12:428:18:636:-48.5371,0,-29.8279	0/1:95:37,58:37:1315:58:2088:-159.592,0,-90.0532	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/0:53:53,0:53:1876:0:0:0,-15.9546,-169.119	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:84:42,42:42:1493:42:1512:-111.088,0,-109.376	0/1:65:18,47:18:644:47:1688:-132.64,0,-38.7236	0/0:104:104,0:104:3687:0:0:0,-31.3071,-332.03	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.292
chr01	2837380	.	AGTA	AGTG	79096.8	PASS	AB=0.512244;ABP=5.61585;AC=146;AF=0.793478;AN=184;AO=3726;CIGAR=3M1X;DP=4734;DPB=4734;DPRA=5.76923;EPP=8085.23;EPPR=2135.4;GTI=1;LEN=1;MEANALT=1.26374;MQM=59.9871;MQMR=59.9868;NS=92;NUMALT=1;ODDS=2.11688;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132369;QR=34743;RO=982;RPL=1;RPP=8085.23;RPPR=2135.4;RPR=3725;RUN=1;SAF=0;SAP=8093.92;SAR=3726;SRF=0;SRP=2135.4;SRR=982;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1061:-95.7994,-9.0309,0	0/1:42:23,19:23:822:19:669:-47.8928,0,-61.6594	1/1:131:0,130:0:0:130:4631:-416.736,-39.1339,0	1/1:53:0,51:0:0:51:1832:-164.897,-15.3525,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:60:0,59:0:0:59:2116:-190.427,-17.7608,0	1/1:65:0,65:0:0:65:2323:-209.33,-19.567,0	0/1:66:34,32:34:1183:32:1124:-81.5972,0,-86.9043	1/1:39:0,39:0:0:39:1388:-125.219,-11.7402,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:63:28,35:28:977:35:1209:-90.1457,0,-69.275	0/1:39:20,19:20:709:19:658:-47.8011,0,-52.3955	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	0/1:39:18,21:18:647:21:746:-55.7237,0,-46.8215	1/1:29:0,29:0:0:29:997:-90.0349,-8.72987,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:14:10,4:10:353:4:144:-9.0992,0,-27.8944	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	1/1:152:0,151:0:0:151:5354:-481.742,-45.4555,0	0/1:84:50,34:50:1773:34:1224:-85.1805,0,-134.566	0/1:88:44,44:44:1551:44:1576:-115.641,0,-113.39	1/1:58:0,55:0:0:55:1960:-176.338,-16.5567,0	0/1:41:27,14:27:947:14:496:-32.632,0,-73.1986	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:180:0,178:0:0:178:6319:-568.46,-53.5833,0	0/1:163:70,92:70:2474:92:3232:-241.976,0,-173.787	1/1:18:0,18:0:0:18:627:-56.7544,-5.41854,0	1/1:181:0,181:0:0:181:6476:-582.925,-54.4864,0	1/1:59:0,59:0:0:59:2103:-189.539,-17.7608,0	0/1:70:35,35:35:1232:35:1225:-89.4799,0,-90.1106	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:20:0,20:0:0:20:701:-63.4117,-6.0206,0	.:.:.:.:.:.:.:.	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:120:62,57:62:2213:57:2005:-144.684,0,-163.399	0/1:54:27,27:27:943:27:964:-70.8212,0,-68.9268	0/1:30:12,18:12:429:18:640:-48.8984,0,-29.9186	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:64:37,27:37:1318:27:968:-68.1714,0,-99.6554	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:107:0,107:0:0:107:3835:-345.345,-32.2102,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:88:0,87:0:0:87:3098:-278.796,-26.1896,0	0/1:56:18,38:18:617:38:1336:-103.679,0,-38.9927	0/1:59:25,34:25:893:34:1207:-91.1739,0,-62.9289	1/1:26:0,26:0:0:26:915:-82.6656,-7.82678,0	0/1:45:23,22:23:802:22:783:-57.2466,0,-58.9515	1/1:105:0,103:0:0:103:3646:-328.082,-31.0061,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:58:21,37:21:742:37:1320:-101.642,0,-49.6438	1/1:43:0,43:0:0:43:1536:-138.532,-12.9443,0	1/1:10:0,9:0:0:9:324:-29.146,-2.70927,0	1/1:70:0,68:0:0:68:2404:-216.358,-20.47,0	1/1:23:2,21:2:60:21:739:-61.1341,-1.22543,0	.:.:.:.:.:.:.:.	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:51:0,51:0:0:51:1804:-162.639,-15.3525,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:133:0,132:0:0:132:4705:-423.36,-39.736,0	0/1:52:26,25:26:919:25:900:-65.7047,0,-67.4096	1/1:34:0,34:0:0:34:1196:-107.943,-10.235,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:59:0,59:0:0:59:2105:-189.717,-17.7608,0	1/1:83:0,82:0:0:82:2918:-262.553,-24.6845,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:35:0,34:0:0:34:1201:-108.18,-10.235,0	0/1:33:15,18:15:531:18:644:-48.3566,0,-38.1885	0/1:13:8,5:8:282:5:176:-12.2716,0,-21.8077	0/1:139:67,72:67:2371:72:2554:-188.267,0,-171.804	0/1:56:30,26:30:1060:26:932:-67.3412,0,-78.8532	1/1:77:0,77:0:0:77:2732:-246.122,-23.1793,0	0/1:99:41,58:41:1471:58:2065:-156.317,0,-102.885	0/1:39:18,20:18:636:20:711:-52.5169,0,-45.7697	1/1:41:0,41:0:0:41:1467:-132.325,-12.3422,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	0/1:53:19,33:19:665:33:1176:-90.1926,0,-44.2181	0/1:61:33,28:33:1180:28:1004:-72.313,0,-88.1449	0/1:39:12,27:12:425:27:963:-75.2458,0,-26.8467	0/1:27:15,12:15:538:12:419:-29.9149,0,-40.628	0/1:28:14,14:14:504:14:496:-36.5454,0,-37.2693	0/1:53:30,23:30:1068:23:806:-56.9049,0,-80.4775	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	1/1:44:0,44:0:0:44:1555:-140.241,-13.2453,0	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	1/1:18:0,18:0:0:18:611:-55.3055,-5.41854,0	0/1:55:22,33:22:775:33:1175:-89.5003,0,-53.5142	0/1:38:25,13:25:877:13:468:-31.0205,0,-67.8074	1/1:75:0,74:0:0:74:2600:-233.887,-22.2762,0	1/1:62:0,61:0:0:61:2149:-193.316,-18.3628,0
chr01	2855791	.	C	G	42851.3	PASS	AB=0.493026;ABP=5.19103;AC=39;AF=0.207447;AN=188;AO=2558;CIGAR=1X;DP=11370;DPB=11370;DPRA=1.33965;EPP=5548.95;EPPR=19094.6;GTI=1;LEN=1;MEANALT=1.02222;MQM=59.9433;MQMR=59.9481;NS=94;NUMALT=1;ODDS=1.10044;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91217;QR=313694;RO=8808;RPL=2554;RPP=5522.95;RPPR=18921.4;RPR=4;RUN=1;SAF=2555;SAP=5531.61;SAR=3;SRF=8786;SRP=18938.7;SRR=22;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:150:70,80:70:2512:80:2858:-212.303,0,-181.177	0/0:98:98,0:98:3482:0:0:0,-29.5009,-313.575	0/0:258:258,0:258:9204:0:0:0,-77.6657,-828.175	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:148:148,0:148:5303:0:0:0,-44.5524,-477.401	0/0:97:94,3:94:3360:3:104:0,-19.4971,-292.914	0/1:114:52,62:52:1835:62:2232:-166.826,0,-131.11	0/0:164:164,0:164:5855:0:0:0,-49.3689,-527.06	0/0:112:112,0:112:3948:0:0:0,-33.7154,-355.51	0/1:120:72,48:72:2551:48:1703:-117.432,0,-193.715	0/1:95:60,35:60:2110:35:1228:-82.2232,0,-161.568	0/0:192:192,0:192:6801:0:0:0,-57.7978,-612.16	0/1:99:48,51:48:1728:51:1820:-134.279,0,-126.003	0/0:89:89,0:89:3179:0:0:0,-26.7917,-286.334	0/0:136:135,0:135:4819:0:0:0,-40.639,-433.502	0/1:87:40,47:40:1432:47:1666:-124.036,0,-102.96	0/0:61:61,0:61:2170:0:0:0,-18.3628,-195.565	0/0:224:223,0:223:7936:0:0:0,-67.1297,-713.906	0/1:353:190,163:190:6736:163:5848:-420.167,0,-499.031	0/1:50:11,39:11:396:39:1404:-111.603,0,-20.9312	0/0:101:101,0:101:3610:0:0:0,-30.404,-325.105	0/1:131:81,50:81:2877:50:1795:-122.398,0,-219.731	0/0:30:30,0:30:1054:0:0:0,-9.0309,-95.1692	0/0:342:341,1:341:12151:1:36:0,-99.354,-1089.84	0/1:312:156,155:156:5542:155:5560:-406.582,0,-404.945	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.999	0/0:369:369,0:369:13151:0:0:0,-111.08,-1183.39	0/0:131:131,0:131:4640:0:0:0,-39.4349,-417.72	0/1:116:55,61:55:1980:61:2192:-162.626,0,-143.555	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:345:176,169:176:6311:169:6003:-436.523,0,-464.225	0/1:92:36,56:36:1264:56:2007:-153.208,0,-86.365	0/1:91:52,39:52:1819:39:1400:-98.9055,0,-136.591	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:173:70,103:70:2508:103:3665:-277.914,0,-173.885	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.831	0/0:183:183,0:183:6530:0:0:0,-55.0885,-587.785	0/0:100:100,0:100:3560:0:0:0,-30.103,-320.607	0/0:111:111,0:111:3933:0:0:0,-33.4143,-353.536	0/1:52:22,30:22:792:30:1058:-79.745,0,-55.9521	0/1:178:84,94:84:2972:94:3361:-249.115,0,-213.898	0/0:137:137,0:137:4874:0:0:0,-41.2411,-438.815	0/1:191:91,100:91:3263:100:3562:-263.291,0,-236.393	0/0:185:185,0:185:6585:0:0:0,-55.6905,-592.734	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/1:112:60,52:60:2144:52:1846:-132.679,0,-159.512	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:115:115,0:115:4090:0:0:0,-34.6184,-368.287	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4284	0/1:45:32,13:32:1144:13:453:-27.5533,0,-89.7232	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.853	0/0:182:181,1:181:6459:1:36:0,-51.1892,-577.797	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:394:393,0:393:14096:0:0:0,-118.305,-1268.04	0/1:254:145,109:145:5190:109:3904:-275.09,0,-390.777	0/0:88:84,4:84:3001:4:144:0,-13.177,-257.006	0/0:88:88,0:88:3123:0:0:0,-26.4906,-281.295	0/0:292:290,2:290:10326:2:72:0,-81.064,-922.352	0/0:109:107,2:107:3786:2:72:0,-25.9755,-334.088	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:46:46,0:46:1622:0:0:0,-13.8474,-146.265	0/1:120:57,63:57:2030:63:2243:-166.01,0,-146.843	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:101:50,51:50:1796:51:1832:-134.757,0,-131.518	0/1:86:49,37:49:1725:37:1315:-92.7592,0,-129.644	0/0:182:182,0:182:6496:0:0:0,-54.7875,-584.619	0/1:214:105,109:105:3738:109:3889:-285.783,0,-272.201	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4218	0/0:135:135,0:135:4815:0:0:0,-40.639,-433.507	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:158:158,0:158:5631:0:0:0,-47.5627,-506.911	0/1:98:55,43:55:1964:43:1532:-108.672,0,-147.534	0/1:214:119,95:119:4246:95:3341:-236.488,0,-317.813	0/1:151:76,75:76:2705:75:2679:-195.9,0,-198.236	0/1:105:47,58:47:1679:58:2055:-153.61,0,-119.788	0/1:199:100,99:100:3550:99:3536:-258.544,0,-259.802	0/1:312:176,136:176:6247:136:4849:-342.634,0,-468.405	0/1:48:24,24:24:855:24:864:-63.6331,0,-62.8126	0/0:151:151,0:151:5382:0:0:0,-45.4555,-484.509	0/0:124:124,0:124:4369:0:0:0,-37.3277,-393.387	0/0:74:74,0:74:2627:0:0:0,-22.2762,-236.678	0/1:146:84,62:84:2969:62:2163:-150.982,0,-223.491	0/1:145:42,103:42:1495:103:3666:-286.494,0,-91.1945	0/0:168:168,0:168:5944:0:0:0,-50.573,-535.058	0/0:162:162,0:162:5763:0:0:0,-48.7669,-518.678
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chr01	2858608	.	G	A	29299.4	PASS	AB=0.62751;ABP=375.698;AC=40;AF=0.212766;AN=188;AO=1670;CIGAR=1X;DP=5067;DPB=5067;DPRA=1.89743;EPP=3629.37;EPPR=7375.16;GTI=14;LEN=1;MEANALT=1.02326;MQM=59.9671;MQMR=59.9929;NS=94;NUMALT=1;ODDS=0.449807;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59336;QR=120493;RO=3395;RPL=0;RPP=3629.37;RPPR=7375.16;RPR=1670;RUN=1;SAF=0;SAP=3629.37;SAR=1670;SRF=0;SRP=7375.16;SRR=3395;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:51:14,37:14:495:37:1302:-102.111,0,-29.5305	0/0:62:62,0:62:2185:0:0:0,-18.6639,-196.912	0/0:126:126,0:126:4455:0:0:0,-37.9298,-401.123	0/0:21:21,0:21:719:0:0:0,-6.32163,-65.0248	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:37:37,0:37:1300:0:0:0,-11.1381,-117.298	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/1:46:15,31:15:531:31:1108:-86.1827,0,-34.2745	0/0:41:41,0:41:1451:0:0:0,-12.3422,-130.885	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:72:32,40:32:1119:40:1424:-106.783,0,-79.3427	0/1:57:25,32:25:884:32:1112:-83.226,0,-62.7197	0/0:26:26,0:26:916:0:0:0,-7.82678,-82.7565	0/1:80:44,36:44:1580:36:1288:-92.1412,0,-118.409	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/1:57:20,37:20:712:37:1303:-100.412,0,-47.2479	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:48:48,0:48:1677:0:0:0,-14.4494,-151.212	0/1:152:56,96:56:1984:96:3424:-262.618,0,-133.078	0/1:37:5,32:5:180:32:1152:-92.852,0,-5.41395	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/1:26:8,18:8:284:18:622:-48.4741,0,-18.0766	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:113:113,0:113:4031:0:0:0,-34.0164,-362.979	0/1:143:41,102:41:1449:102:3619:-282.867,0,-87.6566	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.169	0/0:133:133,0:133:4723:0:0:0,-40.037,-425.23	0/0:45:44,1:44:1571:1:36:0,-9.94807,-138.083	0/1:84:23,61:23:807:61:2165:-169.829,0,-47.6626	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:3:0,3:0:0:3:95:-8.86337,-0.90309,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:137:68,69:68:2408:69:2464:-180.773,0,-175.734	0/1:69:22,47:22:774:47:1659:-128.826,0,-49.2091	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:117:49,68:49:1764:68:2411:-182.024,0,-123.823	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:55:55,0:55:1942:0:0:0,-16.5566,-175.01	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/0:26:25,1:25:896:1:36:0,-4.2285,-77.3621	0/1:31:10,21:10:356:21:752:-58.6743,0,-23.0493	0/1:99:36,62:36:1278:62:2228:-170.923,0,-85.461	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/1:134:33,101:33:1161:101:3570:-281.17,0,-64.4567	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:89:30,59:30:1072:59:2093:-161.657,0,-70.0008	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9338	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:81:81,0:81:2848:0:0:0,-24.3834,-256.556	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:231:230,1:230:8134:1:36:0,-65.9397,-728.485	0/1:130:49,81:49:1752:81:2868:-219.223,0,-118.83	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:50:50,0:50:1733:0:0:0,-15.0515,-156.249	0/0:63:62,1:62:2197:1:36:0,-15.3666,-194.396	0/0:49:49,0:49:1725:0:0:0,-14.7505,-155.533	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:44:22,22:22:779:22:788:-57.9995,0,-57.1867	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:62:7,55:7:248:55:1954:-157.47,0,-4.00033	0/1:84:31,53:31:1108:53:1885:-144.641,0,-74.7445	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:263:108,155:108:3840:155:5500:-415.957,0,-266.625	0/1:34:13,21:13:464:21:744:-57.0493,0,-31.8625	0/0:106:104,2:104:3732:2:72:0,-25.0725,-329.243	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:78:78,0:78:2764:0:0:0,-23.4803,-248.996	0/1:51:18,33:18:644:33:1188:-91.8761,0,-42.9381	0/1:100:22,78:22:777:78:2781:-220.427,0,-40.1474	0/1:68:30,38:30:1064:38:1341:-100.518,0,-75.6016	0/1:34:16,18:16:568:18:648:-48.4169,0,-41.2168	0/1:46:24,22:24:856:22:784:-57.0365,0,-63.5137	0/1:99:61,38:61:2184:38:1352:-92.1784,0,-167.024	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/0:52:52,0:52:1834:0:0:0,-15.6536,-165.339	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:34:16,18:16:572:18:644:-48.0556,0,-41.5784	0/1:74:18,56:18:644:56:1992:-157.278,0,-36.0144	0/0:212:211,0:211:7491:0:0:0,-63.5173,-673.876	0/0:89:89,0:89:3169:0:0:0,-26.7917,-285.434
chr01	2862021	.	C	T	90389.1	PASS	AB=0.511733;ABP=5.91483;AC=148;AF=0.795699;AN=186;AO=4268;CIGAR=1X;DP=5460;DPB=5460;DPRA=0;EPP=9270.85;EPPR=2587.06;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.9332;MQMR=60;NS=93;NUMALT=1;ODDS=0.48246;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151885;QR=41519;RO=1190;RPL=4268;RPP=9270.85;RPPR=2587.06;RPR=0;RUN=1;SAF=4268;SAP=9270.85;SAR=0;SRF=1190;SRP=2587.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:734:-66.3709,-6.32163,0	0/1:91:39,52:39:1371:52:1847:-139.109,0,-96.2941	1/1:59:0,59:0:0:59:2095:-188.818,-17.7608,0	1/1:73:0,73:0:0:73:2586:-232.965,-21.9752,0	1/1:44:0,44:0:0:44:1575:-142.041,-13.2453,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:77:0,77:0:0:77:2738:-246.661,-23.1793,0	1/1:160:0,160:0:0:160:5744:-517.074,-48.1648,0	0/1:55:29,26:29:1013:26:936:-68.0028,0,-74.9225	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:28:0,28:0:0:28:976:-88.1497,-8.42884,0	0/1:44:17,27:17:596:27:909:-68.8682,0,-40.7225	0/1:48:21,27:21:731:27:963:-72.5371,0,-51.661	1/1:72:0,72:0:0:72:2553:-230.02,-21.6742,0	0/1:38:22,16:22:776:16:572:-40.3743,0,-58.723	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:53:0,53:0:0:53:1873:-168.847,-15.9546,0	0/1:54:23,31:23:790:31:1116:-84.4961,0,-55.1594	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:80:0,80:0:0:80:2838:-255.659,-24.0824,0	0/1:57:29,28:29:1028:28:1008:-73.8767,0,-75.6743	0/1:75:56,19:56:1988:19:671:-38.1385,0,-156.617	1/1:34:0,34:0:0:34:1204:-108.664,-10.235,0	0/1:73:43,30:43:1515:30:1076:-75.1777,0,-114.667	1/1:81:0,81:0:0:81:2863:-257.907,-24.3834,0	1/1:201:0,201:0:0:201:7112:-640.033,-60.507,0	0/1:128:60,68:60:2115:68:2421:-179.606,0,-152.087	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:110:0,110:0:0:110:3903:-351.464,-33.1133,0	1/1:115:1,113:1:32:113:4030:-359.669,-31.458,0	0/1:51:25,26:25:891:26:932:-68.8463,0,-65.1562	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:7:1,6:1:27:6:216:-17.6833,0,-0.592573	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:124:62,62:62:2153:62:2211:-161.926,0,-156.707	0/1:128:61,67:61:2074:67:2398:-177.545,0,-148.395	0/1:47:16,31:16:542:31:1103:-85.4308,0,-34.9518	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:64:22,42:22:780:42:1497:-115.757,0,-51.2571	1/1:27:0,27:0:0:27:963:-86.9866,-8.12781,0	1/1:68:0,68:0:0:68:2407:-216.887,-20.47,0	1/1:26:1,25:1:36:25:879:-75.8285,-4.22851,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:90:0,90:0:0:90:3215:-289.572,-27.0927,0	0/1:68:31,37:31:1094:37:1315:-98.181,0,-78.2982	0/1:83:42,41:42:1450:41:1430:-104.005,0,-105.805	1/1:115:0,115:0:0:115:4111:-370.163,-34.6185,0	0/1:82:50,32:50:1746:32:1148:-78.9454,0,-132.735	1/1:124:0,124:0:0:124:4448:-400.49,-37.3277,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:74:33,41:33:1162:41:1447:-108.24,0,-82.6091	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:50:0,49:0:0:49:1756:-158.06,-14.7505,0	1/1:33:0,33:0:0:33:1165:-105.14,-9.93399,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	1/1:51:0,51:0:0:51:1816:-163.713,-15.3525,0	1/1:105:0,105:0:0:105:3740:-336.801,-31.6082,0	.:.:.:.:.:.:.:.	1/1:99:0,99:0:0:99:3534:-318.268,-29.802,0	0/1:131:68,63:68:2390:63:2248:-163.148,0,-175.923	1/1:39:1,38:1:36:38:1364:-119.462,-8.1419,0	1/1:37:0,37:0:0:37:1300:-117.296,-11.1381,0	1/1:129:0,129:0:0:129:4636:-417.385,-38.8329,0	1/1:77:1,76:1:36:76:2701:-239.721,-19.581,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:67:26,41:26:907:41:1446:-110.264,0,-61.7753	0/1:23:11,12:11:381:12:432:-32.2975,0,-27.6969	0/1:88:54,34:54:1847:34:1212:-82.8957,0,-140.014	0/1:42:22,20:22:784:20:712:-51.7634,0,-58.2407	1/1:95:0,95:0:0:95:3374:-303.876,-28.5979,0	0/1:62:26,36:26:904:36:1260:-95.0334,0,-63.008	0/1:69:36,33:36:1237:33:1166:-84.4745,0,-90.8555	1/1:72:0,72:0:0:72:2561:-230.736,-21.6742,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:73:0,73:0:0:73:2607:-234.878,-21.9752,0	0/1:44:21,23:21:731:23:820:-60.8772,0,-52.8651	0/1:107:53,54:53:1856:54:1915:-140.416,0,-135.107	0/1:70:34,36:34:1190:36:1268:-93.3506,0,-86.3314	0/1:33:19,14:19:671:14:504:-35.7641,0,-50.7818	0/1:56:21,35:21:708:35:1256:-96.4876,0,-47.1752	0/1:82:39,43:39:1361:43:1520:-112.336,0,-98.1019	0/1:30:12,18:12:424:18:643:-49.16,0,-29.4655	1/1:49:0,49:0:0:49:1733:-156.253,-14.7505,0	1/1:34:0,34:0:0:34:1188:-107.22,-10.235,0	1/1:43:0,43:0:0:43:1527:-137.716,-12.9443,0	0/1:79:31,48:31:1052:48:1704:-129.864,0,-71.2017	0/1:30:19,11:19:666:11:388:-26.2265,0,-51.2327	1/1:37:0,37:0:0:37:1328:-119.82,-11.1381,0	1/1:61:0,61:0:0:61:2170:-195.566,-18.3628,0
chr01	2935948	.	C	T	24919.6	PASS	AB=0.413172;ABP=191.933;AC=39;AF=0.211957;AN=184;AO=1203;CIGAR=1X;DP=7355;DPB=7355;DPRA=1.0073;EPP=63.4595;EPPR=13335.9;GTI=2;LEN=1;MEANALT=1.04762;MQM=59.985;MQMR=59.9938;NS=92;NUMALT=1;ODDS=2.73658;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42549;QR=217246;RO=6148;RPL=1203;RPP=2615.29;RPPR=13344.5;RPR=0;RUN=1;SAF=693;SAP=63.4595;SAR=510;SRF=6145;SRP=13327.2;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:555:0:0:0,-4.81648,-50.276	0/1:99:73,26:73:2585:26:912:-52.5774,0,-203.096	0/0:147:147,0:147:5204:0:0:0,-44.2514,-468.503	0/0:175:175,0:175:6228:0:0:0,-52.6802,-560.618	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.684	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:89:89,0:89:3083:0:0:0,-26.7917,-277.695	0/0:149:148,1:148:5186:1:36:0,-41.2552,-463.283	0/1:66:42,24:42:1441:24:841:-56.1384,0,-110.112	0/0:122:122,0:122:4314:0:0:0,-36.7257,-388.438	0/0:26:26,0:26:902:0:0:0,-7.82678,-81.4929	0/1:61:15,46:15:531:46:1619:-127.634,0,-29.7591	0/1:100:23,77:23:774:77:2734:-216.2,0,-39.8663	0/0:36:36,0:36:1247:0:0:0,-10.8371,-112.528	0/1:90:27,63:27:950:63:2260:-176.57,0,-58.7207	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:56:56,0:56:1983:0:0:0,-16.8577,-178.744	0/1:66:26,40:26:927:40:1389:-105.434,0,-63.8794	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:189:188,1:188:6660:1:36:0,-53.2964,-595.884	0/1:65:42,22:42:1476:22:776:-50.5348,0,-113.506	0/1:23:18,5:18:644:5:180:-9.62837,0,-51.3669	0/0:84:84,0:84:2959:0:0:0,-25.2865,-266.543	0/1:59:43,16:43:1523:16:572:-34.0527,0,-119.602	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:281:281,0:281:9929:0:0:0,-84.5894,-893.557	0/1:116:88,28:88:3128:28:1004:-55.7564,0,-246.826	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:246:246,0:246:8684:0:0:0,-74.0534,-781.56	0/0:105:104,0:104:3697:0:0:0,-31.3071,-332.573	0/1:74:57,17:57:2014:17:596:-31.6916,0,-159.256	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:175:76,99:76:2708:99:3499:-262.441,0,-191.284	0/0:96:87,7:87:3075:7:252:0,-5.62769,-253.949	0/1:58:22,36:22:772:36:1280:-98.0429,0,-52.3415	1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0	0/1:81:65,16:65:2319:16:564:-26.7069,0,-184.586	0/0:28:28,0:28:953:0:0:0,-8.42884,-86.0746	0/0:147:147,0:147:5209:0:0:0,-44.2514,-468.951	0/0:60:60,0:60:2120:0:0:0,-18.0618,-191.067	0/0:55:55,0:55:1928:0:0:0,-16.5566,-173.794	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.364	0/1:68:57,11:57:1963:11:392:-15.15,0,-156.473	0/1:152:130,22:130:4604:22:773:-24.1338,0,-368.768	0/0:135:135,0:135:4763:0:0:0,-40.639,-428.829	0/1:152:124,28:124:4404:28:1004:-44.9193,0,-350.777	0/0:126:126,0:126:4464:0:0:0,-37.9298,-401.775	.:.:.:.:.:.:.:.	0/0:123:123,0:123:4348:0:0:0,-37.0267,-391.498	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:17:17,0:17:591:0:0:0,-5.11751,-53.5153	0/0:109:109,0:109:3794:0:0:0,-32.8123,-341.662	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:3,5:3:93:5:172:-13.4097,0,-6.26849	0/0:63:63,0:63:2215:0:0:0,-18.9649,-199.613	0/0:64:64,0:64:2275:0:0:0,-19.2659,-205.012	.:.:.:.:.:.:.:.	0/0:286:286,0:286:10083:0:0:0,-86.0946,-907.419	0/1:124:106,18:106:3764:18:631:-19.788,0,-301.632	0/0:51:50,1:50:1792:1:36:0,-11.7543,-157.895	0/0:100:100,0:100:3536:0:0:0,-30.103,-318.45	0/0:189:189,0:189:6700:0:0:0,-56.8947,-603.079	0/0:88:88,0:88:3096:0:0:0,-26.4906,-278.869	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/1:81:33,48:33:1155:48:1689:-127.91,0,-79.8721	0/1:6:3,3:3:93:3:108:-8.26899,0,-6.87055	0/1:51:43,8:43:1494:8:288:-10.9149,0,-119.397	0/1:72:39,33:39:1376:33:1176:-84.4736,0,-102.462	0/0:118:118,0:118:4163:0:0:0,-35.5215,-374.853	0/1:104:86,18:86:3071:18:640:-26.6222,0,-245.311	0/1:55:46,9:46:1627:9:324:-12.9492,0,-130.161	0/1:78:53,25:53:1885:25:892:-57.1193,0,-146.446	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:130:130,0:130:4616:0:0:0,-39.1339,-415.605	0/1:79:51,28:51:1820:28:936:-60.7581,0,-140.3	0/1:107:76,31:76:2728:31:1100:-67.1001,0,-213.552	0/1:95:45,50:45:1574:50:1790:-132.785,0,-113.351	0/1:79:28,51:28:977:51:1782:-136.877,0,-64.4589	0/1:102:33,69:33:1159:69:2456:-190.588,0,-73.9108	0/1:137:58,79:58:2076:79:2787:-209.829,0,-145.869	0/1:41:21,20:21:739:20:716:-52.4255,0,-54.4901	0/0:67:67,0:67:2343:0:0:0,-20.169,-211.128	0/0:40:40,0:40:1415:0:0:0,-12.0412,-127.647	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/1:68:20,48:20:696:48:1704:-133.176,0,-42.4924	0/1:85:15,70:15:536:70:2470:-196.967,0,-22.9873	0/0:97:97,0:97:3437:0:0:0,-29.1999,-309.544	0/0:75:75,0:75:2644:0:0:0,-22.5772,-238.206
chr01	2960929	.	A	C	26806.4	PASS	AB=0.483936;ABP=8.59159;AC=37;AF=0.196809;AN=188;AO=1213;CIGAR=1X;DP=5332;DPB=5332;DPRA=1.43567;EPP=73.9027;EPPR=462.588;GTI=0;LEN=1;MEANALT=1.04762;MQM=59.958;MQMR=59.9674;NS=94;NUMALT=1;ODDS=0.448258;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43205;QR=146687;RO=4113;RPL=0;RPP=2637.01;RPPR=8934.28;RPR=1213;RUN=1;SAF=706;SAP=73.9027;SAR=507;SRF=2523;SRP=462.588;SRR=1590;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.377	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.846	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.45	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6511	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	0/0:141:141,0:141:5055:0:0:0,-42.4452,-455.094	0/1:92:47,45:47:1688:45:1607:-117.211,0,-124.512	0/1:65:34,31:34:1224:31:1116:-81.1801,0,-90.9001	0/0:140:140,0:140:4997:0:0:0,-42.1442,-449.877	0/1:118:57,61:57:2030:61:2164:-159.503,0,-147.45	0/0:125:124,0:124:4422:0:0:0,-37.3277,-397.79	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:33:15,18:15:536:18:648:-48.7179,0,-38.6408	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:64:64,0:64:2264:0:0:0,-19.2659,-204.021	0/1:81:41,40:41:1464:40:1432:-104.793,0,-107.673	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:29:18,11:18:648:11:392:-26.8902,0,-49.922	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/0:84:83,1:83:2976:1:36:0,-21.6882,-264.387	0/1:83:41,42:41:1464:42:1477:-108.232,0,-107.071	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:84:84,0:84:2984:0:0:0,-25.2865,-268.791	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:23:13,10:13:464:10:360:-25.8206,0,-35.1738	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:236:117,119:117:4156:119:4255:-312.086,0,-303.178	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:59:33,26:33:1188:26:932:-66.4381,0,-89.4678	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:59:39,20:39:1380:20:716:-47.0069,0,-106.738	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:65:64,1:64:2296:1:36:0,-15.9687,-203.303	0/0:95:95,0:95:3383:0:0:0,-28.5978,-304.686	0/0:106:106,0:106:3752:0:0:0,-31.9092,-337.879	0/0:41:41,0:41:1456:0:0:0,-12.3422,-131.336	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:56:27,29:27:945:29:1036:-76.6962,0,-68.5046	0/0:35:35,0:35:1228:0:0:0,-10.536,-110.821	0/1:48:25,23:25:877:23:820:-59.6731,0,-64.7958	0/0:57:57,0:57:2015:0:0:0,-17.1587,-181.623	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:39:39,0:39:1374:0:0:0,-11.7402,-123.954	0/0:145:140,4:140:4996:4:131:0,-31.5882,-437.67	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:36:36,0:36:1271:0:0:0,-10.8371,-114.692	0/1:62:19,43:19:684:43:1491:-115.813,0,-43.2265	0/0:25:24,1:24:852:1:36:0,-3.92747,-73.4021	0/0:37:37,0:37:1291:0:0:0,-11.1381,-116.487	0/0:54:53,1:53:1883:1:36:0,-12.6573,-166.063	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/1:135:69,66:69:2432:66:2334:-169.68,0,-178.496	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:34:21,13:21:744:13:464:-31.8625,0,-57.0493	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:60:35,25:35:1252:25:883:-61.7257,0,-94.9233	0/1:52:28,24:28:974:24:856:-61.7075,0,-72.3146	0/1:18:10,8:10:356:8:284:-20.4848,0,-26.9627	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:70:69,0:69:2484:0:0:0,-20.7711,-223.453	0/1:25:18,7:18:640:7:252:-15.5032,0,-50.4036	0/1:79:42,37:42:1500:37:1326:-95.8609,0,-111.513	0/1:124:62,62:62:2197:62:2199:-160.847,0,-160.666	0/1:125:60,65:60:2137:65:2304:-169.99,0,-154.65	0/1:138:80,58:80:2847:58:2064:-144.489,0,-214.926	0/1:221:120,101:120:4300:101:3604:-258.04,0,-320.649	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:73:73,0:73:2594:0:0:0,-21.9752,-233.706	0/0:115:114,0:114:4092:0:0:0,-34.3174,-368.031	0/1:159:83,75:83:2980:75:2691:-194.508,0,-220.509	0/1:100:38,62:38:1356:62:2199:-168.072,0,-92.2375	0/0:50:49,0:49:1729:0:0:0,-14.7505,-155.531	0/0:183:183,0:183:6563:0:0:0,-55.0885,-590.749
chr01	2969127	.	GGTA	AGTG,AGTA	251035	PASS	AB=0.505912,0.490793;ABP=4.5765,6.80901;AC=147,39;AF=0.790323,0.209677;AN=186;AO=9167,2543;CIGAR=1X2M1X,1X3M;DP=11756;DPB=11756.2;DPRA=127.772,1.31664;EPP=19908.9,5516.38;EPPR=5.18177;GTI=1;LEN=4,1;MEANALT=1.90217,2.38636;MQM=59.66,59.9497;MQMR=60;NS=93;NUMALT=2;ODDS=1.07238;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=323495,91079;QR=35;RO=1;RPL=0,0;RPP=19908.9,5525.06;RPPR=5.18177;RPR=9167,2543;RUN=1,1;SAF=9167,2542;SAP=19908.9,5516.38;SAR=0,1;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,50,0:0:0:50,0:1733,0:-155.919,-15.0515,0,-155.919,-15.0515,-155.919	1/2:159:0,67,91:0:0:67,91:2353,3252:-456.529,-265.148,-244.979,-191.375,0,-163.981	1/1:114:0,113,0:0:0:113,0:3992,0:-359.146,-34.0164,0,-359.146,-34.0164,-359.146	1/1:209:0,209,0:0:0:209,0:7365,0:-662.552,-62.9153,0,-662.552,-62.9153,-662.552	1/1:101:0,100,0:0:0:100,0:3558,0:-320.12,-30.103,0,-320.12,-30.103,-320.12	1/1:87:0,86,1:0:0:86,1:3054,36:-274.698,-25.8886,0,-271.76,-22.5913,-271.459	1/1:214:0,213,0:0:0:213,0:7514,0:-675.985,-64.1194,0,-675.985,-64.1194,-675.985	1/1:296:0,293,1:0:0:293,1:10341,36:-930.219,-88.2018,0,-927.282,-85.2544,-926.981	1/2:197:0,105,87:0:0:105,87:3677,3111:-552.84,-253.705,-222.097,-299.166,0,-272.977	1/1:232:0,232,0:0:0:232,0:8214,0:-739.262,-69.839,0,-739.262,-69.839,-739.262	1/1:41:0,41,0:0:0:41,0:1451,0:-130.881,-12.3422,0,-130.881,-12.3422,-130.881	1/2:72:0,35,37:0:0:35,37:1233,1317:-207.885,-107.684,-97.1477,-100.555,0,-89.4166	1/2:97:0,60,37:0:0:60,37:2137,1328:-282.763,-108.68,-90.6177,-174.441,0,-163.303	1/1:66:0,66,0:0:0:66,0:2362,0:-212.825,-19.868,0,-212.825,-19.868,-212.825	1/2:105:0,59,46:0:0:59,46:2090,1629:-303.264,-133.049,-115.289,-170.569,0,-156.721	1/1:62:0,62,0:0:0:62,0:2175,0:-196.014,-18.6639,0,-196.014,-18.6639,-196.014	1/1:50:0,50,0:0:0:50,0:1762,0:-158.824,-15.0515,0,-158.824,-15.0515,-158.824	1/2:94:0,54,39:0:0:54,39:1931,1400:-271.659,-114.22,-97.9644,-157.543,0,-145.803	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/1:252:0,250,0:0:0:250,0:8839,0:-795.174,-75.2575,0,-795.174,-75.2575,-795.174	1/2:243:0,123,120:0:0:123,120:4362,4304:-706.752,-351.412,-314.386,-355.697,0,-319.573	1/2:154:0,41,113:0:0:41,113:1418,4030:-444.087,-328.868,-316.525,-115.568,0,-81.5512	1/1:117:0,117,0:0:0:117,0:4102,0:-369.276,-35.2205,0,-369.276,-35.2205,-369.276	1/2:168:0,85,83:0:0:85,83:3027,2976:-489.787,-243.087,-217.499,-247.058,0,-222.072	1/1:169:0,168,0:0:0:168,0:5874,0:-528.477,-50.573,0,-528.477,-50.573,-528.477	1/1:445:0,441,1:0:0:441,1:15567,36:-1400.28,-132.754,0,-1397.34,-129.817,-1397.04	1/2:284:0,139,143:0:0:139,143:4924,5121:-818.704,-417.623,-375.78,-401.077,0,-358.03	1/1:57:0,57,0:0:0:57,0:2029,0:-182.869,-17.1587,0,-182.869,-17.1587,-182.869	1/1:334:0,330,0:0:0:330,0:11679,0:-1049.98,-99.3399,0,-1049.98,-99.3399,-1049.98	1/1:102:0,102,0:0:0:102,0:3569,0:-321.093,-30.7051,0,-321.093,-30.7051,-321.093	1/2:172:0,93,79:0:0:93,79:3286,2832:-498.935,-231.337,-203.341,-267.954,0,-244.173	1/1:17:0,17,0:0:0:17,0:597,0:-54.0338,-5.11751,0,-54.0338,-5.11751,-54.0338	1/1:11:0,11,0:0:0:11,0:375,0:-34.078,-3.31133,0,-34.078,-3.31133,-34.078	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:6:0,3,3:0:0:3,3:104,108:-17.6103,-9.17208,-8.26899,-8.79127,0,-7.88818	1/1:3:0,3,0:0:0:3,0:102,0:-9.51638,-0.90309,0,-9.51638,-0.90309,-9.51638	1/2:272:0,145,127:0:0:145,127:5136,4559:-790.56,-372.243,-328.594,-418.673,0,-380.443	1/2:235:0,142,92:0:0:142,92:5008,3308:-677.635,-269.883,-227.136,-407.749,0,-380.054	1/2:88:0,50,38:0:0:50,38:1730,1368:-252.545,-111.982,-96.9302,-140.917,0,-129.478	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:136:0,67,69:0:0:67,69:2377,2453:-393.911,-200.249,-180.08,-194.017,0,-173.246	1/1:38:0,37,0:0:0:37,0:1300,0:-116.936,-11.1381,0,-116.936,-11.1381,-116.936	1/1:185:0,184,0:0:0:184,0:6481,0:-582.955,-55.3895,0,-582.955,-55.3895,-582.955	1/1:98:0,98,0:0:0:98,0:3492,0:-314.482,-29.5009,0,-314.482,-29.5009,-314.482	1/1:81:0,81,0:0:0:81,0:2851,0:-256.821,-24.3834,0,-256.821,-24.3834,-256.821	1/1:200:0,199,0:0:0:199,0:7042,0:-633.441,-59.905,0,-633.441,-59.905,-633.441	1/2:153:0,72,81:0:0:72,81:2548,2892:-443.674,-236.133,-214.459,-207.896,0,-183.513	1/2:265:0,130,135:0:0:130,135:4595,4847:-769.942,-395.741,-356.607,-374.557,0,-333.918	1/1:178:0,178,0:0:0:178,0:6283,0:-565.466,-53.5833,0,-565.466,-53.5833,-565.466	1/2:143:0,64,79:0:0:64,79:2268,2837:-416.546,-231.787,-212.521,-185.116,0,-161.335	1/1:292:0,291,0:0:0:291,0:10272,0:-923.995,-87.5997,0,-923.995,-87.5997,-923.995	.:.:.:.:.:.:.:.	1/1:158:0,158,0:0:0:158,0:5558,0:-500.345,-47.5627,0,-500.345,-47.5627,-500.345	1/1:60:0,60,0:0:0:60,0:2120,0:-191.067,-18.0618,0,-191.067,-18.0618,-191.067	1/1:12:0,12,0:0:0:12,0:408,0:-36.8071,-3.61236,0,-36.8071,-3.61236,-36.8071	1/1:143:0,141,0:0:0:141,0:4887,0:-439.45,-42.4452,0,-439.45,-42.4452,-439.45	1/1:34:0,34,0:0:0:34,0:1185,0:-106.939,-10.235,0,-106.939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chr01	2969189	.	TGATA	CGATA,CGATG	293137	PASS	AB=0.522825,0.470043;ABP=28.3865,46.7247;AC=147,41;AF=0.781915,0.218085;AN=188;AO=10966,2666;CIGAR=1X4M,1X3M1X;DP=13710;DPB=13710.2;DPRA=149,1.11391;EPP=23780.6,5792.16;EPPR=16.0391;GTI=2;LEN=1,5;MEANALT=2.25,2.79245;MQM=59.7114,53.8095;MQMR=60;NS=94;NUMALT=2;ODDS=0.891964;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=389357,93339;QR=208;RO=6;RPL=4,0;RPP=23780.6,5792.16;RPPR=16.0391;RPR=10962,2666;RUN=1,1;SAF=0,0;SAP=23815.4,5792.16;SAR=10966,2666;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50,0:0:0:50,0:1748,0:-157.539,-15.0515,0,-157.539,-15.0515,-157.539	1/2:131:0,75,56:0:0:75,56:2676,1967:-377.248,-159.1,-136.523,-218.5,0,-201.643	1/1:220:0,219,0:0:0:219,0:7794,0:-701.1,-65.9256,0,-701.1,-65.9256,-701.1	1/1:171:0,170,0:0:0:170,0:6068,0:-546.001,-51.1751,0,-546.001,-51.1751,-546.001	1/1:101:0,99,1:0:0:99,1:3499,36:-314.797,-29.802,0,-311.864,-26.7995,-311.563	1/1:95:0,94,0:0:0:94,0:3335,0:-299.938,-28.2968,0,-299.938,-28.2968,-299.938	1/1:142:0,142,0:0:0:142,0:5077,0:-457.054,-42.7463,0,-457.054,-42.7463,-457.054	1/1:273:0,272,1:0:0:272,1:9624,35:-865.677,-81.8802,0,-862.835,-78.6898,-862.534	1/2:148:1,81,66:1:35:81,66:2865,2286:-414.812,-181.826,-160.291,-230.437,0,-213.417	1/1:129:0,129,0:0:0:129,0:4623,0:-416.219,-38.8329,0,-416.219,-38.8329,-416.219	1/1:185:0,183,0:0:0:183,0:6462,0:-581.211,-55.0885,0,-581.211,-55.0885,-581.211	1/2:94:0,53,41:0:0:53,41:1847,1428:-266.015,-115.813,-99.8581,-150.55,0,-138.208	1/2:99:0,61,38:0:0:61,38:2133,1342:-282.768,-109.267,-90.9046,-173.851,0,-162.412	1/1:267:0,267,0:0:0:267,0:9393,0:-844.958,-80.375,0,-844.958,-80.375,-844.958	1/2:115:1,50,64:1:35:50,64:1777,2260:-324.9,-180.402,-168.198,-141.955,0,-125.537	1/1:124:0,123,1:0:0:123,1:4339,36:-390.313,-37.0267,0,-387.381,-33.7345,-387.079	1/1:153:0,152,1:0:0:152,1:5389,35:-484.763,-45.7566,0,-481.922,-42.5662,-481.621	1/2:108:1,48,58:1:36:48,58:1712,2035:-301.52,-162.269,-150.757,-136.658,0,-122.135	1/1:66:0,62,2:0:0:62,2:2206,72:-198.476,-18.6639,0,-192.617,-12.7605,-192.015	1/1:290:0,285,3:0:0:285,3:10114,107:-909.847,-85.7936,0,-901.131,-77.0466,-900.228	1/2:192:0,121,68:0:0:121,68:4289,2380:-542.867,-193.461,-157.037,-349.503,0,-329.033	1/2:102:0,50,50:0:0:50,50:1754,1743:-284.248,-141.511,-126.459,-142.733,0,-127.681	1/1:145:0,145,0:0:0:145,0:5171,0:-465.532,-43.6494,0,-465.532,-43.6494,-465.532	1/2:146:0,80,66:0:0:80,66:2859,2292:-419.162,-186.191,-162.109,-233.322,0,-213.454	1/1:70:0,70,0:0:0:70,0:2478,0:-223.264,-21.0721,0,-223.264,-21.0721,-223.264	1/1:484:0,482,0:0:0:482,0:17166,0:-1544.13,-145.096,0,-1544.13,-145.096,-1544.13	1/2:230:0,127,102:0:0:127,102:4510,3554:-655.401,-287.919,-249.688,-367.586,0,-336.881	1/1:36:0,36,0:0:0:36,0:1264,0:-114.055,-10.8371,0,-114.055,-10.8371,-114.055	1/1:307:0,306,0:0:0:306,0:10908,0:-981.164,-92.1152,0,-981.164,-92.1152,-981.164	1/1:281:0,278,1:0:0:278,1:9892,36:-889.739,-83.6863,0,-886.81,-80.7572,-886.509	1/2:250:0,148,100:0:0:148,100:5288,3485:-713.924,-282.806,-238.253,-431.11,0,-401.007	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	2/2:1:0,0,1:0:0:0,1:0,36:-3.58923,-3.58923,-3.58923,-0.30103,-0.30103,0	1/2:5:0,2,3:0:0:2,3:72,105:-13.5425,-7.64585,-7.04379,-6.23466,0,-5.33157	1/1:14:0,14,0:0:0:14,0:492,0:-44.6123,-4.21442,0,-44.6123,-4.21442,-44.6123	1/2:210:0,103,104:0:0:103,104:3655,3643:-594.094,-296.303,-265.297,-297.816,0,-266.508	1/2:223:0,110,111:0:0:110,111:3920,3893:-635.577,-316.209,-283.095,-319.372,0,-285.957	1/2:118:0,64,53:0:0:64,53:2223,1875:-332.816,-152.126,-132.86,-180.706,0,-164.752	2/2:1:0,0,1:0:0:0,1:0,36:-3.59317,-3.59317,-3.59317,-0.30103,-0.30103,0	1/2:191:0,103,87:0:0:103,87:3595,3042:-539.209,-246.951,-215.944,-292.248,0,-266.058	1/1:61:0,61,0:0:0:61,0:2137,0:-192.59,-18.3628,0,-192.59,-18.3628,-192.59	1/1:213:0,213,0:0:0:213,0:7541,0:-678.693,-64.1194,0,-678.693,-64.1194,-678.693	1/1:98:0,98,0:0:0:98,0:3484,0:-313.766,-29.5009,0,-313.766,-29.5009,-313.766	1/1:90:0,89,0:0:0:89,0:3089,0:-277.586,-26.7917,0,-277.586,-26.7917,-277.586	1/1:142:0,142,0:0:0:142,0:5032,0:-452.972,-42.7463,0,-452.972,-42.7463,-452.972	1/2:172:0,91,81:0:0:91,81:3229,2844:-494.252,-231.216,-203.822,-263.389,0,-239.005	1/2:245:0,143,99:0:0:143,99:5082,3477:-696.55,-282.429,-239.382,-414.183,0,-384.381	1/1:164:0,160,3:0:0:160,3:5677,102:-510.699,-48.1648,0,-502.431,-39.9116,-501.528	1/2:236:0,111,124:0:0:111,124:3953,4363:-676.322,-354.25,-320.835,-322.145,0,-284.817	1/1:238:0,236,0:0:0:236,0:8367,0:-752.57,-71.0431,0,-752.57,-71.0431,-752.57	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:242:0,242,0:0:0:242,0:8616,0:-775.261,-72.8493,0,-775.261,-72.8493,-775.261	1/1:190:0,189,0:0:0:189,0:6731,0:-605.559,-56.8947,0,-605.559,-56.8947,-605.559	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/1:134:0,134,0:0:0:134,0:4760,0:-428.534,-40.338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chr01	3027033	.	T	A	47877.5	PASS	AB=0.529317;ABP=21.4718;AC=137;AF=0.728723;AN=188;AO=3524;CIGAR=1X;DP=4761;DPB=4761;DPRA=25.586;EPP=7655.28;EPPR=2684.78;GTI=5;LEN=1;MEANALT=1.02151;MQM=29.1669;MQMR=59.5287;NS=94;NUMALT=1;ODDS=0.767503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125228;QR=43665;RO=1235;RPL=0;RPP=7655.28;RPPR=2684.78;RPR=3524;RUN=1;SAF=0;SAP=7655.28;SAR=3524;SRF=0;SRP=2684.78;SRR=1235;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:2,10:2:68:10:356:-20.9467,0,-2.55508	0/1:35:17,18:17:608:18:644:-33.9902,0,-44.5151	1/1:79:2,77:2:72:77:2717:-181.146,-16.9446,0	1/1:82:4,78:4:140:78:2763:-188.558,-11.7399,0	1/1:34:2,32:2:72:32:1144:-71.9368,-3.40314,0	1/1:34:0,34:0:0:34:1212:-83.6435,-10.235,0	1/1:46:1,45:1:36:45:1602:-112.698,-10.2491,0	1/1:69:0,69:0:0:69:2468:-170.645,-20.7711,0	0/1:53:19,34:19:663:34:1208:-67.7523,0,-44.0385	1/1:52:4,48:4:144:48:1673:-109.52,-2.35178,0	1/1:53:3,50:3:108:50:1735:-116.813,-5.87942,0	0/1:67:37,30:37:1306:30:1068:-53.3479,0,-97.6709	0/1:67:35,32:35:1244:32:1115:-57.993,0,-92.0712	1/1:81:0,81:0:0:81:2853:-197.886,-24.3834,0	0/1:70:45,25:45:1591:25:881:-43.5039,0,-122.403	1/1:38:1,37:1:36:37:1284:-86.4337,-7.84087,0	1/1:43:1,41:1:36:41:1456:-97.1794,-9.36171,0	0/1:27:13,14:13:459:14:496:-26.3945,0,-33.5081	1/1:23:1,22:1:36:22:775:-50.4426,-3.32542,0	1/1:78:0,78:0:0:78:2796:-202.769,-23.4803,0	0/1:82:45,37:45:1582:37:1316:-66.4102,0,-117.93	0/1:38:23,15:23:797:15:528:-29.6798,0,-60.6068	1/1:17:1,16:1:36:16:572:-38.3876,-1.51924,0	0/1:52:30,22:30:1064:22:775:-38.3873,0,-80.4117	0/1:23:4,19:4:144:19:684:-39.5509,0,-6.38993	1/1:104:5,99:5:180:99:3540:-251.533,-14.756,0	0/1:105:47,58:47:1676:58:2068:-110.807,0,-119.51	1/1:24:0,24:0:0:24:852:-58.5804,-7.22472,0	1/1:103:3,100:3:108:100:3570:-257.659,-20.9309,0	1/1:85:1,84:1:36:84:3012:-203.959,-21.9893,0	0/1:58:21,37:21:737:37:1313:-77.5303,0,-49.1909	1/1:2:0,2:0:0:2:72:-5.19878,-0.60206,0	1/1:6:0,6:0:0:6:208:-14.8996,-1.80618,0	0/1:17:15,2:15:521:2:68:-0.00380508,0,-42.0906	0/1:4:2,2:2:72:2:68:-3.91719,0,-5.62401	0/1:5:1,4:1:36:4:144:-8.6188,0,-2.09312	0/1:140:69,71:69:2432:71:2532:-151.098,0,-176.981	0/1:98:47,51:47:1655:51:1815:-95.2965,0,-119.602	0/1:38:22,16:22:776:16:552:-27.3256,0,-58.6938	0/1:3:2,1:2:72:1:36:-1.83311,0,-5.93363	0/1:40:20,20:20:712:20:716:-36.8224,0,-52.3655	1/1:19:1,18:1:36:18:636:-40.4287,-2.1213,0	1/1:47:1,46:1:36:46:1648:-109.355,-10.5552,0	1/1:50:3,47:3:108:47:1667:-111.759,-4.97633,0	1/1:55:1,54:1:36:54:1932:-137.455,-12.9584,0	1/1:19:0,19:0:0:19:672:-51.9785,-5.71957,0	0/1:56:16,40:16:553:40:1440:-81.9192,0,-33.2363	0/1:50:27,23:27:957:23:811:-44.5043,0,-71.39	0/1:27:3,24:3:108:24:860:-54.2135,0,-1.94736	0/1:63:29,34:29:1040:34:1192:-68.0345,0,-74.9495	1/1:29:0,29:0:0:29:1024:-79.2261,-8.72987,0	0/1:10:3,7:3:108:7:248:-15.3099,0,-6.97567	1/1:67:3,64:3:108:64:2280:-147.379,-10.1107,0	1/1:12:0,12:0:0:12:428:-33.1533,-3.61236,0	0/1:5:1,4:1:36:4:140:-8.54337,0,-2.08408	1/1:61:2,59:2:72:59:2090:-138.317,-11.5261,0	1/1:5:0,5:0:0:5:172:-13.141,-1.50515,0	0/1:4:2,2:2:72:2:72:-4.5995,0,-5.6326	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83577	1/1:56:4,52:4:144:52:1838:-113.621,-3.5535,0	1/1:101:3,98:3:108:98:3482:-244.5,-20.3289,0	1/1:4:0,4:0:0:4:144:-10.7402,-1.20412,0	1/1:113:3,110:3:108:110:3936:-287.367,-23.9412,0	0/1:91:50,41:50:1779:41:1450:-77.3367,0,-132.804	0/1:47:19,28:19:676:28:1008:-55.0775,0,-46.9946	1/1:53:4,49:4:135:49:1747:-113.978,-3.47718,0	1/1:66:4,62:4:140:62:2190:-147.275,-6.9282,0	1/1:34:1,33:1:36:33:1184:-82.0383,-6.63675,0	0/1:21:3,18:3:104:18:636:-38.0569,0,-3.32222	0/1:20:4,16:4:140:16:568:-33.5065,0,-6.92398	0/1:67:28,39:28:1008:39:1396:-85.2531,0,-70.1642	0/1:4:3,1:3:104:1:36:-1.69864,0,-8.49869	0/1:60:34,26:34:1191:26:936:-46.239,0,-89.4211	0/1:66:34,32:34:1195:32:1148:-58.9743,0,-87.9702	1/1:74:1,73:1:36:73:2589:-174.361,-18.6779,0	0/1:122:58,64:58:2030:64:2279:-130.414,0,-146.239	0/1:34:13,21:13:468:21:738:-41.2286,0,-32.2164	0/1:73:31,42:31:1095:42:1492:-80.5628,0,-76.8839	0/1:9:1,8:1:36:8:288:-17.3425,0,-0.889005	1/1:61:3,58:3:100:58:2072:-133.479,-9.03239,0	0/1:72:36,36:36:1269:36:1279:-66.5231,0,-92.8284	0/1:57:24,33:24:856:33:1148:-67.3939,0,-59.0094	0/1:71:23,48:23:808:48:1707:-103.363,0,-51.667	0/1:56:33,23:33:1169:23:807:-42.865,0,-88.6528	0/1:62:26,36:26:928:36:1280:-75.1102,0,-65.1697	0/1:114:54,60:54:1893:60:2148:-121.469,0,-136.329	0/1:25:6,19:6:216:19:680:-39.4631,0,-12.2648	1/1:53:4,49:4:140:49:1752:-107.325,-3.01337,0	1/1:49:1,48:1:36:48:1708:-114.674,-11.1612,0	1/1:27:0,27:0:0:27:956:-67.1944,-8.12781,0	0/1:101:54,47:54:1904:47:1672:-85.2431,0,-141.209	0/1:51:32,19:32:1144:19:680:-34.4709,0,-87.9138	1/1:118:0,118:0:0:118:4201:-304.997,-35.5215,0	1/1:60:2,58:2:72:58:2054:-143.882,-11.2275,0
chr01	3027038	.	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chr01	3027055	.	C	T	48805.7	PASS	AB=0.52619;ABP=17.9102;AC=137;AF=0.728723;AN=188;AO=3594;CIGAR=1X;DP=4871;DPB=4871;DPRA=26.1774;EPP=7807.28;EPPR=2775.98;GTI=5;LEN=1;MEANALT=1;MQM=29.1864;MQMR=59.585;NS=94;NUMALT=1;ODDS=0.73205;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128048;QR=45575;RO=1277;RPL=0;RPP=7807.28;RPPR=2775.98;RPR=3594;RUN=1;SAF=0;SAP=7807.28;SAR=3594;SRF=0;SRP=2775.98;SRR=1277;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:2,12:2:72:12:432:-25.6102,0,-2.6223	0/1:36:18,18:18:644:18:636:-33.5415,0,-47.4526	1/1:82:2,80:2:72:80:2833:-189.132,-17.8477,0	1/1:81:4,77:4:144:77:2737:-185.757,-11.0698,0	1/1:34:2,32:2:72:32:1132:-71.7158,-3.40314,0	1/1:34:0,34:0:0:34:1208:-83.834,-10.235,0	1/1:48:1,47:1:36:47:1676:-118.085,-10.8512,0	1/1:75:0,75:0:0:75:2684:-186.282,-22.5773,0	0/1:55:20,35:20:716:35:1248:-69.5262,0,-48.2109	1/1:53:4,49:4:144:49:1748:-114.115,-2.65281,0	1/1:54:3,51:3:108:51:1824:-121.368,-6.18045,0	0/1:68:36,32:36:1265:32:1140:-57.9722,0,-93.6803	0/1:66:34,32:34:1224:32:1140:-58.8503,0,-90.5827	1/1:83:0,83:0:0:83:2968:-204.749,-24.9855,0	0/1:76:50,26:50:1787:26:913:-44.2064,0,-138.229	1/1:39:1,38:1:36:38:1340:-89.8886,-8.1419,0	1/1:42:1,41:1:36:41:1468:-97.3338,-9.04499,0	0/1:28:13,15:13:456:15:540:-28.7041,0,-32.9362	1/1:23:1,22:1:36:22:788:-50.7784,-3.32542,0	1/1:79:0,79:0:0:79:2832:-205.412,-23.7814,0	0/1:81:43,38:43:1540:38:1352:-69.4612,0,-114.5	0/1:39:25,14:25:882:14:481:-25.8747,0,-67.9555	1/1:17:1,16:1:36:16:576:-38.4918,-1.51924,0	0/1:55:30,25:30:1071:25:888:-45.1877,0,-80.1357	0/1:23:4,19:4:129:19:680:-39.9278,0,-5.00397	1/1:104:5,99:5:180:99:3552:-251.615,-14.756,0	0/1:111:52,59:52:1860:59:2097:-111.163,0,-134.259	1/1:25:0,25:0:0:25:896:-61.1906,-7.52575,0	1/1:101:3,98:3:108:98:3480:-252.351,-20.3289,0	1/1:92:1,91:1:36:91:3253:-221.858,-24.0965,0	0/1:57:21,36:21:752:36:1288:-76.0361,0,-50.8475	1/1:2:0,2:0:0:2:68:-5.12131,-0.60206,0	1/1:8:0,8:0:0:8:288:-20.1974,-2.40824,0	0/0:17:16,1:16:572:1:36:0,-2.38131,-49.069	0/1:4:2,2:2:72:2:72:-3.99466,0,-5.62401	0/1:5:1,4:1:36:4:144:-8.6188,0,-2.09312	0/1:143:73,70:73:2601:70:2520:-148.392,0,-191.28	0/1:103:50,53:50:1787:53:1869:-98.1127,0,-129.972	0/1:35:21,14:21:756:14:491:-23.8769,0,-57.8102	0/1:3:2,1:2:72:1:36:-1.83311,0,-5.93363	0/1:41:22,19:22:788:19:676:-34.5728,0,-58.9026	1/1:20:1,19:1:32:19:684:-43.5262,-2.82129,0	1/1:48:1,47:1:36:47:1684:-112.105,-10.8563,0	1/1:52:4,48:4:144:48:1712:-111.398,-2.33994,0	1/1:57:1,56:1:36:56:1999:-142.442,-13.5604,0	1/1:19:0,19:0:0:19:665:-50.9985,-5.71957,0	0/1:58:17,41:17:608:41:1476:-84.2877,0,-37.5923	0/1:51:27,24:27:964:24:852:-47.2051,0,-71.7219	0/1:30:5,25:5:180:25:892:-55.819,0,-7.43323	0/1:64:29,35:29:1036:35:1243:-70.9611,0,-74.288	1/1:31:0,31:0:0:31:1104:-84.9688,-9.33193,0	0/1:10:3,7:3:108:7:244:-15.2047,0,-6.97567	1/1:68:3,65:3:104:65:2313:-149.786,-10.7791,0	1/1:12:0,12:0:0:12:402:-31.5005,-3.61236,0	0/1:5:1,4:1:36:4:140:-8.54337,0,-2.08408	1/1:62:2,60:2:72:60:2144:-141.379,-11.8271,0	1/1:5:0,5:0:0:5:176:-13.2469,-1.50515,0	0/1:4:2,2:2:72:2:72:-4.5995,0,-5.6326	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83577	1/1:55:4,51:4:144:51:1812:-111.534,-3.25247,0	1/1:102:3,99:3:108:99:3536:-247.944,-20.6299,0	1/1:4:0,4:0:0:4:144:-10.7402,-1.20412,0	1/1:111:3,108:3:108:108:3856:-282.805,-23.3392,0	0/1:92:50,42:50:1800:42:1480:-79.4739,0,-134.393	0/1:47:18,29:18:648:29:1036:-57.9013,0,-44.4804	1/1:53:4,49:4:144:49:1752:-113.345,-2.64817,0	1/1:67:4,63:4:140:63:2248:-150.619,-7.22923,0	1/1:38:1,37:1:36:37:1313:-90.9202,-7.84087,0	1/1:23:2,21:2:72:21:752:-46.3033,-0.0869676,0	0/1:20:4,16:4:144:16:568:-33.5065,0,-7.29302	0/1:67:29,38:29:1036:38:1360:-82.4371,0,-73.384	0/1:4:3,1:3:104:1:36:-1.69864,0,-8.49869	0/1:66:39,27:39:1378:27:964:-46.748,0,-104.441	0/1:73:37,36:37:1324:36:1288:-66.7943,0,-97.4706	1/1:74:1,73:1:36:73:2585:-174.174,-18.6779,0	0/1:124:60,64:60:2137:64:2284:-130.08,0,-155.259	0/1:36:14,22:14:500:22:792:-43.3698,0,-34.2194	0/1:76:33,43:33:1180:43:1525:-81.675,0,-83.6298	0/1:10:2,8:2:72:8:288:-17.0414,0,-3.82642	1/1:59:3,56:3:108:56:1992:-127.662,-7.6856,0	0/1:71:35,36:35:1260:36:1288:-67.0857,0,-92.3242	0/1:55:23,32:23:813:32:1140:-66.412,0,-55.7393	0/1:74:25,49:25:896:49:1756:-105.518,0,-58.6841	0/1:58:34,24:34:1186:24:860:-45.4262,0,-89.5763	0/1:67:29,38:29:1044:38:1368:-79.2455,0,-74.1011	0/1:115:53,62:53:1881:62:2224:-126.268,0,-134.948	0/1:25:6,19:6:216:19:684:-39.5369,0,-12.2648	1/1:53:4,49:4:144:49:1733:-106.187,-2.64934,0	1/1:52:2,50:2:68:50:1784:-117.32,-9.20445,0	1/1:28:0,28:0:0:28:996:-69.5166,-8.42884,0	0/1:103:54,49:54:1926:49:1740:-89.7798,0,-142.587	0/1:53:34,19:34:1224:19:684:-33.973,0,-94.5093	1/1:121:0,121:0:0:121:4259:-310.734,-36.4246,0	1/1:61:2,59:2:72:59:2089:-146.441,-11.5286,0
chr01	3027064	.	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chr01	3027071	.	A	T	48902.5	PASS	AB=0.526337;ABP=18.1084;AC=137;AF=0.728723;AN=188;AO=3611;CIGAR=1X;DP=4889;DPB=4889;DPRA=26.2742;EPP=7835.51;EPPR=2743.52;GTI=3;LEN=1;MEANALT=1;MQM=29.1778;MQMR=59.5477;NS=94;NUMALT=1;ODDS=0.0837768;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128017;QR=45539;RO=1278;RPL=3610;RPP=7835.51;RPPR=2743.52;RPR=1;RUN=1;SAF=0;SAP=7844.2;SAR=3611;SRF=0;SRP=2778.15;SRR=1278;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:2,10:2:72:10:333:-20.4141,0,-3.22436	0/1:38:19,19:19:672:19:672:-35.4021,0,-49.3666	1/1:83:2,81:2:72:81:2892:-192.386,-18.1488,0	1/1:83:4,79:4:144:79:2801:-190.679,-11.6719,0	1/1:35:2,33:2:68:33:1176:-74.7019,-4.08028,0	1/1:35:0,35:0:0:35:1236:-86.1494,-10.5361,0	1/1:48:1,47:1:36:47:1646:-116.544,-10.8512,0	1/1:77:0,77:0:0:77:2732:-190.751,-23.1793,0	0/1:53:19,34:19:667:34:1200:-67.4448,0,-44.4	1/1:53:3,50:3:108:50:1764:-120.155,-5.8866,0	1/1:55:3,52:3:108:52:1868:-124.188,-6.48148,0	0/1:70:38,32:38:1360:32:1132:-57.2229,0,-101.628	0/1:67:35,32:35:1260:32:1133:-58.0279,0,-93.512	1/1:85:0,85:0:0:85:3009:-208.736,-25.5876,0	0/1:77:51,26:51:1832:26:928:-44.6772,0,-141.977	1/1:39:1,38:1:36:38:1360:-90.2334,-8.1419,0	1/1:43:1,42:1:36:42:1504:-99.7964,-9.34602,0	0/1:27:12,15:12:428:15:536:-28.9312,0,-30.7228	1/1:22:1,21:1:36:21:756:-48.3896,-3.02439,0	1/1:79:0,79:0:0:79:2801:-204.228,-23.7814,0	0/1:83:43,40:43:1511:40:1417:-72.8738,0,-111.274	0/1:38:23,15:23:815:15:532:-29.8207,0,-62.2316	1/1:17:1,16:1:36:16:576:-38.4918,-1.51924,0	0/1:54:29,25:29:1040:25:873:-44.8659,0,-77.6495	0/1:23:4,19:4:144:19:661:-38.7762,0,-6.38993	1/1:106:5,101:5:176:101:3581:-255.27,-15.7251,0	0/1:110:51,59:51:1820:59:2058:-110.325,0,-130.959	1/1:25:0,25:0:0:25:880:-60.919,-7.52575,0	1/1:101:3,98:3:104:98:3460:-250.43,-20.7012,0	1/1:94:1,93:1:36:93:3320:-227.029,-24.6985,0	0/1:55:20,35:20:720:35:1248:-73.9217,0,-48.5721	1/1:2:0,2:0:0:2:72:-5.19878,-0.60206,0	1/1:9:0,9:0:0:9:301:-21.86,-2.70927,0	0/0:18:16,2:16:572:2:68:0,-0.297225,-46.6839	0/1:5:2,3:2:72:3:104:-6.37722,0,-5.32298	0/1:5:1,4:1:32:4:144:-8.6188,0,-1.69416	0/1:144:74,70:74:2635:70:2512:-147.581,0,-194.039	0/1:102:50,52:50:1788:52:1848:-96.5956,0,-130.363	0/1:37:21,16:21:748:16:576:-28.5368,0,-56.4875	0/1:3:2,1:2:72:1:36:-1.83311,0,-5.93363	0/1:41:21,20:21:748:20:704:-36.3561,0,-55.3031	1/1:20:1,19:1:36:19:672:-42.9058,-2.42233,0	1/1:48:1,47:1:36:47:1657:-111.286,-10.8563,0	1/1:51:4,47:4:140:47:1688:-109.466,-2.40795,0	1/1:57:1,56:1:36:56:1992:-142.369,-13.5604,0	1/1:20:0,20:0:0:20:689:-53.3626,-6.0206,0	0/1:60:17,43:17:581:43:1528:-88.1762,0,-34.5487	0/1:49:27,22:27:972:22:780:-42.5517,0,-73.0451	0/1:30:5,25:5:180:25:873:-54.9431,0,-7.43323	0/1:66:30,36:30:1063:36:1288:-73.1634,0,-76.1128	1/1:31:0,31:0:0:31:1085:-83.9365,-9.33193,0	0/1:10:3,7:3:108:7:248:-15.3099,0,-6.97567	1/1:67:3,64:3:108:64:2245:-146.368,-10.1107,0	1/1:12:0,12:0:0:12:428:-33.1533,-3.61236,0	0/1:5:1,4:1:36:4:136:-8.46794,0,-2.08408	1/1:63:2,61:2:72:61:2110:-141.622,-12.1282,0	1/1:4:0,4:0:0:4:136:-10.5274,-1.20412,0	0/1:4:2,2:2:72:2:72:-4.5995,0,-5.6326	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83577	1/1:55:4,51:4:144:51:1808:-112.046,-3.25247,0	1/1:102:3,99:3:108:99:3513:-246.967,-20.6299,0	1/1:4:0,4:0:0:4:129:-9.95039,-1.20412,0	1/1:110:3,107:3:108:107:3804:-279.235,-23.0381,0	0/1:94:51,43:51:1799:43:1521:-81.1782,0,-133.701	0/1:49:19,30:19:684:30:1068:-59.6403,0,-47.1121	1/1:52:4,48:4:144:48:1688:-110.036,-2.34714,0	1/1:67:4,63:4:144:63:2222:-148.814,-6.86019,0	1/1:39:1,38:1:36:38:1356:-93.8764,-8.1419,0	1/1:23:2,21:2:72:21:756:-46.377,-0.0869676,0	0/1:20:4,16:4:140:16:548:-33.137,0,-6.92398	0/1:69:30,39:30:1068:39:1400:-84.7246,0,-74.958	0/1:3:2,1:2:72:1:32:-1.88464,0,-5.93363	0/1:68:42,26:42:1496:26:890:-42.244,0,-114.448	0/1:74:37,37:37:1324:37:1312:-68.735,0,-97.1695	1/1:73:1,72:1:36:72:2560:-172.235,-18.3769,0	0/1:125:60,65:60:2121:65:2294:-130.719,0,-153.523	0/1:35:14,21:14:504:21:748:-41.093,0,-34.8824	0/1:75:34,41:34:1216:41:1464:-77.7822,0,-87.1693	0/1:10:2,8:2:68:8:280:-16.8926,0,-3.44741	1/1:60:3,57:3:108:57:2028:-130.124,-7.98663,0	0/1:73:36,37:36:1292:37:1320:-68.8727,0,-94.6004	0/1:55:23,32:23:811:32:1117:-65.4758,0,-55.5601	0/1:73:25,48:25:892:48:1720:-103.206,0,-58.6245	0/1:56:32,24:32:1135:24:856:-45.9243,0,-85.5957	0/1:65:29,36:29:1040:36:1288:-74.4148,0,-74.3427	0/1:115:53,62:53:1878:62:2232:-126.475,0,-134.679	0/1:25:6,19:6:216:19:684:-39.5369,0,-12.2648	1/1:54:4,50:4:144:50:1776:-109.147,-2.95037,0	1/1:51:2,49:2:72:49:1752:-114.552,-8.5244,0	1/1:27:0,27:0:0:27:968:-66.7663,-8.12781,0	0/1:101:52,49:52:1859:49:1756:-90.6761,0,-137.17	0/1:53:34,19:34:1220:19:684:-33.973,0,-94.1491	1/1:120:0,120:0:0:120:4241:-308.977,-36.1236,0	1/1:62:2,60:2:72:60:2125:-149.017,-11.8296,0
chr01	3044057	.	T	G	26843.2	PASS	AB=0.468723;ABP=32.7578;AC=38;AF=0.204301;AN=186;AO=1645;CIGAR=1X;DP=8270;DPB=8270;DPRA=1.14792;EPP=3575.08;EPPR=14378.2;GTI=1;LEN=1;MEANALT=1.04878;MQM=53.4991;MQMR=59.6787;NS=93;NUMALT=1;ODDS=0.0382966;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58884;QR=237037;RO=6620;RPL=0;RPP=3575.08;RPPR=14378.2;RPR=1645;RUN=1;SAF=1645;SAP=3575.08;SAR=0;SRF=6620;SRP=14378.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6621	0/1:341:197,144:197:7041:144:5159:-359.868,0,-531.028	0/0:136:135,0:135:4844:0:0:0,-40.639,-435.776	0/0:165:165,0:165:5905:0:0:0,-49.6699,-531.491	0/0:97:97,0:97:3492:0:0:0,-29.1999,-314.337	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.257	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.251	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.462	0/1:102:57,45:57:2033:45:1612:-113.164,0,-152.519	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.65	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.447	0/1:56:28,28:28:1008:28:991:-72.4276,0,-74.1623	0/1:54:23,31:23:828:31:1108:-83.2164,0,-58.5885	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.005	0/1:41:21,20:21:756:20:705:-51.2642,0,-56.025	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.218	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.735	0/1:47:24,23:24:864:23:824:-60.1598,0,-63.9251	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6677	0/0:149:148,0:148:5316:0:0:0,-44.5524,-478.319	0/1:120:65,55:65:2332:55:1968:-140.754,0,-173.994	0/1:99:33,66:33:1188:66:2349:-181.605,0,-77.4266	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.03	0/1:122:67,55:67:2400:55:1970:-140.502,0,-179.527	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.19	0/0:319:319,0:319:11426:0:0:0,-96.0286,-1028.1	0/1:140:75,65:75:2696:65:2317:-165.8,0,-200.726	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4042	0/0:259:259,0:259:9276:0:0:0,-77.9668,-834.798	0/0:324:324,0:324:11567:0:0:0,-97.5337,-1040.73	0/1:123:63,60:63:2264:60:2152:-156.446,0,-166.986	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8088	0/1:5:1,4:1:36:4:144:-11.775,0,-2.09312	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6118	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:124:63,61:63:2256:61:2192:-160.036,0,-165.973	0/1:193:106,87:106:3804:87:3120:-222.114,0,-284.427	0/1:42:23,19:23:828:19:669:-47.7428,0,-61.994	.:.:.:.:.:.:.:.	0/1:126:76,50:76:2732:50:1788:-123.046,0,-208.183	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.71	0/0:165:165,0:165:5912:0:0:0,-49.6699,-532.144	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.482	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.4909	0/0:141:141,0:141:5052:0:0:0,-42.4452,-454.819	0/1:121:63,58:63:2245:58:2088:-150.732,0,-165.879	0/1:152:82,69:82:2940:69:2484:-177.755,0,-219.009	0/0:84:84,0:84:3000:0:0:0,-25.2865,-270.221	0/1:90:51,39:51:1832:39:1395:-98.3247,0,-138.063	0/0:182:182,0:182:6513:0:0:0,-54.7875,-586.247	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:176:176,0:176:6290:0:0:0,-52.9813,-566.068	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.161	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.751	0/0:63:62,1:62:2205:1:36:0,-15.3692,-194.913	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:12:6,6:6:216:6:212:-15.8075,0,-16.1782	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.539	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.025	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:175:174,0:174:6252:0:0:0,-52.3792,-562.349	0/1:110:63,47:63:2264:47:1692:-119.064,0,-170.883	0/1:26:15,11:15:540:11:396:-27.9573,0,-41.1074	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.318	0/0:160:159,1:159:5696:1:36:0,-44.5691,-509.152	0/0:205:203,2:203:7227:2:72:0,-54.8794,-643.542	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:100:100,0:100:3588:0:0:0,-30.103,-322.935	0/1:67:41,26:41:1464:26:929:-63.6436,0,-111.887	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	0/1:109:41,68:41:1472:68:2433:-184.867,0,-99.9385	0/1:49:27,22:27:956:22:792:-56.6216,0,-71.5971	0/0:134:134,0:134:4781:0:0:0,-40.338,-429.918	0/1:129:79,50:79:2840:50:1800:-122.996,0,-216.987	0/1:137:68,69:68:2425:69:2472:-180.757,0,-177.244	0/1:72:37,35:37:1324:35:1260:-91.5691,0,-97.7876	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.427	0/1:99:54,45:54:1940:45:1590:-112.774,0,-145.02	0/1:184:101,82:101:3604:82:2922:-207.188,0,-269.081	0/1:102:45,57:45:1612:57:2052:-153.987,0,-114.665	0/1:38:18,20:18:644:20:716:-53.2716,0,-46.8491	0/1:55:29,26:29:1040:26:921:-66.5296,0,-77.3554	0/1:89:52,37:52:1868:37:1332:-93.1515,0,-141.529	0/1:21:15,6:15:536:6:216:-13.4135,0,-42.2286	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.291	0/0:43:43,0:43:1510:0:0:0,-12.9443,-136.191	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.236	0/1:68:37,31:37:1320:31:1116:-80.1205,0,-98.6273	0/1:32:9,23:9:324:23:818:-63.9812,0,-19.8729	0/0:95:95,0:95:3378:0:0:0,-28.5978,-304.219	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.837
chr01	3048974	.	CAT	GAG,CAG	156137	PASS	AB=0.379365,0.615288;ABP=404.852,370.015;AC=145,43;AF=0.771277,0.228723;AN=188;AO=3843,2233;CIGAR=1X1M1X,2M1X;DP=6108;DPB=6108.33;DPRA=9.37174,1.75087;EPP=592.038,4843.23;EPPR=16.0391;GTI=10;LEN=3,1;MEANALT=1.72043,2.29545;MQM=59.8704,59.9776;MQMR=57;NS=94;NUMALT=2;ODDS=9195.93;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=134745,79333;QR=161;RO=6;RPL=593,1;RPP=3992.04,4843.23;RPPR=16.0391;RPR=3250,2232;RUN=1,1;SAF=2002,0;SAP=17.6569,4851.91;SAR=1841,2233;SRF=0;SRP=16.0391;SRR=6;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18,0:0:0:18,0:629,0:-56.9345,-5.41854,0,-56.9345,-5.41854,-56.9345	1/2:68:0,23,45:0:0:23,45:819,1591:-196.687,-129.933,-123.01,-67.1087,0,-53.5624	1/1:42:0,42,0:0:0:42,0:1495,0:-134.845,-12.6433,0,-134.845,-12.6433,-134.845	1/1:53:0,53,0:0:0:53,0:1881,0:-169.567,-15.9546,0,-169.567,-15.9546,-169.567	1/1:31:0,31,0:0:0:31,0:1111,0:-100.301,-9.33193,0,-100.301,-9.33193,-100.301	1/1:19:0,19,0:0:0:19,0:670,0:-60.6211,-5.71957,0,-60.6211,-5.71957,-60.6211	1/1:64:0,63,0:0:0:63,0:2202,0:-198.081,-18.9649,0,-198.081,-18.9649,-198.081	1/1:53:0,53,0:0:0:53,0:1895,0:-170.828,-15.9546,0,-170.828,-15.9546,-170.828	1/2:95:0,40,55:0:0:40,55:1415,1955:-274.911,-159.668,-147.627,-115.597,0,-99.0404	1/1:39:0,37,1:0:0:37,1:1301,32:-117.049,-11.1381,0,-114.472,-8.57971,-114.17	1/1:78:0,78,0:0:0:78,0:2719,0:-244.952,-23.4803,0,-244.952,-23.4803,-244.952	1/2:117:0,72,45:0:0:72,45:2540,1597:-337.291,-130.472,-108.798,-207.173,0,-193.626	1/2:91:0,60,31:0:0:60,31:2082,1097:-258.911,-89.7061,-71.6443,-169.556,0,-160.224	1/1:102:0,102,0:0:0:102,0:3559,0:-320.434,-30.7051,0,-320.434,-30.7051,-320.434	1/2:76:0,45,30:0:0:45,30:1601,1065:-217.248,-86.7692,-73.2228,-130.474,0,-121.443	1/1:86:0,86,0:0:0:86,0:3026,0:-272.569,-25.8886,0,-272.569,-25.8886,-272.569	1/1:108:0,108,0:0:0:108,0:3768,0:-339.321,-32.5112,0,-339.321,-32.5112,-339.321	1/2:82:0,65,17:0:0:65,17:2287,606:-235.922,-49.7536,-30.1866,-186.524,0,-181.407	1/1:70:0,70,0:0:0:70,0:2489,0:-224.263,-21.0721,0,-224.263,-21.0721,-224.263	1/1:54:0,53,0:0:0:53,0:1847,0:-166.162,-15.9546,0,-166.162,-15.9546,-166.162	1/2:124:0,32,92:0:0:32,92:1113,3271:-357.402,-266.917,-257.284,-90.8347,0,-63.1399	2/2:180:2,6,172:2:60:6,172:209,6144:-547.325,-530.932,-533.921,-46.9929,-34.7451,0	1/1:39:0,39,0:0:0:39,0:1364,0:-123.057,-11.7402,0,-123.057,-11.7402,-123.057	1/2:64:0,31,32:0:0:31,32:1096,1135:-181.677,-92.4649,-83.1329,-89.2067,0,-79.5738	1/1:27:0,27,0:0:0:27,0:933,0:-84.2809,-8.12781,0,-84.2809,-8.12781,-84.2809	1/1:74:0,74,0:0:0:74,0:2573,0:-231.789,-22.2762,0,-231.789,-22.2762,-231.789	1/2:132:0,34,97:0:0:34,97:1170,3461:-376.876,-282.087,-271.851,-94.7763,0,-65.5764	1/1:58:0,58,0:0:0:58,0:2026,0:-182.61,-17.4597,0,-182.61,-17.4597,-182.61	1/1:57:0,55,2:0:0:55,2:1926,72:-173.255,-16.5567,0,-167.379,-10.322,-166.777	1/1:14:0,14,0:0:0:14,0:491,0:-44.5215,-4.21442,0,-44.5215,-4.21442,-44.5215	1/2:91:0,25,65:0:0:25,65:863,2312:-258.523,-188.414,-180.889,-70.0975,0,-50.5305	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:8:0,8,0:0:0:8,0:279,0:-25.4484,-2.40824,0,-25.4484,-2.40824,-25.4484	1/2:13:0,2,11:0:0:2,11:64,392:-37.4593,-32.3087,-31.7067,-5.47604,0,-2.16471	1/1:3:0,3,0:0:0:3,0:101,0:-9.42353,-0.90309,0,-9.42353,-0.90309,-9.42353	1/1:11:0,11,0:0:0:11,0:367,0:-33.3517,-3.31133,0,-33.3517,-3.31133,-33.3517	1/2:175:0,73,101:0:0:73,101:2576,3553:-498.968,-289.214,-267.239,-209.747,0,-179.343	2/2:84:1,2,81:1:27:2,81:72,2892:-257.757,-252.183,-253.709,-22.2846,-18.4487,0	1/2:63:0,45,18:0:0:45,18:1559,622:-177.578,-50.8836,-37.3373,-127.04,0,-121.622	1/1:2:0,2,0:0:0:2,0:69,0:-6.55254,-0.60206,0,-6.55254,-0.60206,-6.55254	1/2:106:0,23,83:0:0:23,83:820,2963:-308.701,-241.858,-234.934,-67.1417,0,-42.1562	1/1:72:0,72,0:0:0:72,0:2478,0:-223.27,-21.6742,0,-223.27,-21.6742,-223.27	1/1:35:0,35,0:0:0:35,0:1234,0:-111.327,-10.5361,0,-111.327,-10.5361,-111.327	1/1:95:0,94,0:0:0:94,0:3300,0:-296.831,-28.2968,0,-296.831,-28.2968,-296.831	1/1:92:0,92,0:0:0:92,0:3148,0:-283.517,-27.6948,0,-283.517,-27.6948,-283.517	1/1:33:0,33,0:0:0:33,0:1143,0:-103.173,-9.93399,0,-103.173,-9.93399,-103.173	1/2:144:0,19,121:0:0:19,121:680,4314:-407.137,-351.685,-345.965,-55.4771,0,-19.0525	1/2:156:0,24,130:0:0:24,130:852,4589:-443.178,-373.757,-366.532,-69.485,0,-30.3511	1/1:35:0,35,0:0:0:35,0:1230,0:-111.002,-10.5361,0,-111.002,-10.5361,-111.002	1/2:99:0,15,84:0:0:15,84:509,2995:-285.77,-244.495,-239.98,-41.6168,0,-16.3303	1/1:43:0,43,0:0:0:43,0:1517,0:-136.822,-12.9443,0,-136.822,-12.9443,-136.822	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:36:0,35,0:0:0:35,0:1217,0:-109.5,-10.5361,0,-109.5,-10.5361,-109.5	1/1:17:0,16,0:0:0:16,0:565,0:-50.9242,-4.81648,0,-50.9242,-4.81648,-50.9242	1/1:9:0,9,0:0:0:9,0:308,0:-28.0511,-2.70927,0,-28.0511,-2.70927,-28.0511	1/1:36:0,36,0:0:0:36,0:1253,0:-113.07,-10.8371,0,-113.07,-10.8371,-113.07	1/1:34:0,34,0:0:0:34,0:1186,0:-106.955,-10.235,0,-106.955,-10.235,-106.955	1/2:4:0,2,2:0:0:2,2:72,68:-11.7405,-5.85565,-5.25359,-6.23466,0,-5.6326	2/2:7:0,0,7:0:0:0,7:0,248:-22.6642,-22.6642,-22.6642,-2.10721,-2.10721,0	1/1:33:0,31,2:0:0:31,2:1074,72:-96.6055,-9.33193,0,-90.7299,-3.09727,-90.1278	1/1:108:0,108,0:0:0:108,0:3810,0:-343.1,-32.5112,0,-343.1,-32.5112,-343.1	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:23:0,22,0:0:0:22,0:769,0:-69.3222,-6.62266,0,-69.3222,-6.62266,-69.3222	1/2:110:0,23,87:0:0:23,87:778,3114:-317.361,-254.297,-247.373,-63.4063,0,-37.2167	1/2:37:0,12,25:0:0:12,25:425,882:-106.792,-72.1705,-68.5581,-34.9747,0,-27.4489	1/1:23:0,23,0:0:0:23,0:799,0:-72.2265,-6.92369,0,-72.2265,-6.92369,-72.2265	1/1:72:0,70,1:0:0:70,1:2485,36:-223.591,-21.0721,0,-220.653,-18.0848,-220.352	1/1:38:0,38,0:0:0:38,0:1339,0:-120.807,-11.4391,0,-120.807,-11.4391,-120.807	1/1:67:0,67,0:0:0:67,0:2329,0:-209.862,-20.169,0,-209.862,-20.169,-209.862	1/1:43:0,43,0:0:0:43,0:1500,0:-135.286,-12.9443,0,-135.286,-12.9443,-135.286	1/2:76:0,61,15:0:0:61,15:2148,536:-218.927,-44.0594,-25.6965,-175.223,0,-170.708	2/2:10:0,1,9:0:0:1,9:28,320:-28.8548,-26.6437,-26.3426,-2.70927,-0.210574,0	1/2:93:0,12,81:0:0:12,81:424,2895:-269.995,-236.402,-232.79,-33.9392,0,-9.55578	1/2:50:1,12,36:1:20:12,36:424,1292:-138.205,-103.977,-101.86,-33.1136,0,-23.7646	1/1:64:0,64,0:0:0:64,0:2219,0:-199.96,-19.2659,0,-199.96,-19.2659,-199.96	1/2:120:0,20,100:0:0:20,100:698,3548:-346.195,-289.426,-283.405,-57.1194,0,-27.0164	1/2:87:0,17,70:0:0:17,70:595,2504:-252.949,-204.541,-199.423,-48.7595,0,-27.6874	1/2:58:0,17,41:0:0:17,41:595,1453:-167.124,-118.717,-113.599,-48.7586,0,-36.4164	1/1:5:0,5,0:0:0:5,0:169,0:-15.4322,-1.50515,0,-15.4322,-1.50515,-15.4322	1/1:43:0,41,2:0:0:41,2:1444,72:-129.896,-12.3422,0,-124.02,-6.10757,-123.418	1/2:117:0,31,86:0:0:31,86:1091,3059:-338.466,-249.651,-240.319,-89.1675,0,-63.2789	1/2:152:1,43,108:1:27:43,108:1521,3815:-432.223,-308.639,-297.823,-121.84,0,-91.4553	1/2:76:0,51,25:0:0:51,25:1801,866:-217.396,-70.7268,-55.3742,-147.018,0,-139.492	1/2:65:0,39,25:0:0:39,25:1387,892:-185.747,-72.7142,-60.9741,-113.029,0,-105.503	1/2:76:0,57,19:0:0:57,19:1997,676:-217.933,-55.4441,-38.2854,-162.843,0,-157.124	1/2:152:1,72,79:1:27:72,79:2532,2828:-434.392,-228.591,-209.033,-204.071,0,-182.405	1/2:44:0,29,15:0:0:29,15:1026,522:-126.365,-42.7918,-34.062,-83.923,0,-79.4075	1/1:74:0,74,0:0:0:74,0:2594,0:-233.711,-22.2762,0,-233.711,-22.2762,-233.711	1/1:106:0,104,0:0:0:104,0:3675,0:-330.658,-31.3071,0,-330.658,-31.3071,-330.658	1/1:81:0,80,0:0:0:80,0:2824,0:-254.039,-24.0824,0,-254.039,-24.0824,-254.039	1/2:78:0,51,27:0:0:51,27:1791,955:-223.904,-78.137,-62.7845,-146.119,0,-137.991	1/2:88:0,29,58:0:0:29,58:1006,2022:-246.2,-164.428,-155.698,-81.7601,0,-64.3003	1/1:42:0,42,0:0:0:42,0:1502,0:-135.474,-12.6433,0,-135.474,-12.6433,-135.474	1/1:161:0,160,0:0:0:160,0:5599,0:-503.662,-48.1648,0,-503.662,-48.1648,-503.662
chr01	3094407	.	T	C	173606	PASS	AB=0.549356;ABP=91.7518;AC=148;AF=0.795699;AN=186;AO=8157;CIGAR=1X;DP=10061;DPB=10061;DPRA=0;EPP=17707;EPPR=4128.81;GTI=0;LEN=1;MEANALT=1.04301;MQM=59.9432;MQMR=59.9958;NS=93;NUMALT=1;ODDS=9.1239;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=289509;QR=67709;RO=1900;RPL=8156;RPP=17707;RPPR=4128.81;RPR=1;RUN=1;SAF=8157;SAP=17715.7;SAR=0;SRF=1900;SRP=4128.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:959:-86.597,-8.12781,0	0/1:108:47,61:47:1684:61:2166:-161.906,0,-119.336	1/1:110:0,110:0:0:110:3881:-349.484,-33.1133,0	1/1:197:0,197:0:0:197:7035:-633.209,-59.3029,0	1/1:97:0,97:0:0:97:3432:-309.092,-29.1999,0	1/1:54:0,54:0:0:54:1925:-173.526,-16.2556,0	1/1:210:0,210:0:0:210:7423:-668.112,-63.2163,0	1/1:197:0,197:0:0:197:6945:-625.119,-59.3029,0	0/1:74:35,39:35:1234:39:1383:-102.492,0,-89.0864	1/1:140:0,140:0:0:140:4939:-444.663,-42.1442,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:74:36,38:36:1247:38:1348:-99.3427,0,-90.2521	0/1:98:49,49:49:1756:49:1747:-128.012,0,-128.823	1/1:72:0,72:0:0:72:2543:-229.119,-21.6742,0	0/1:78:38,40:38:1351:40:1421:-104.705,0,-98.4093	1/1:50:0,50:0:0:50:1777:-160.211,-15.0515,0	1/1:81:0,81:0:0:81:2830:-254.937,-24.3834,0	0/1:67:25,41:25:896:41:1456:-111.108,0,-60.7326	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:288:0,288:0:0:288:10273:-924.411,-86.6966,0	0/1:158:70,88:70:2503:88:3077:-229.586,0,-177.959	0/1:165:97,68:97:3452:68:2389:-165.595,0,-261.222	1/1:76:0,76:0:0:76:2697:-242.97,-22.8783,0	0/1:76:27,49:27:954:49:1740:-134.001,0,-63.2957	1/1:79:0,79:0:0:79:2798:-252.059,-23.7814,0	1/1:360:0,359:0:0:359:12751:-1147.06,-108.07,0	0/1:235:116,119:116:4105:119:4252:-312.11,0,-298.893	1/1:51:0,51:0:0:51:1806:-162.82,-15.3525,0	1/1:367:0,367:0:0:367:13056:-1174.85,-110.478,0	1/1:53:0,53:0:0:53:1875:-169.028,-15.9546,0	0/1:76:31,45:31:1098:45:1567:-118.436,0,-76.2503	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:11:0,11:0:0:11:383:-34.795,-3.31133,0	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:203:93,110:93:3324:110:3897:-289.815,0,-238.267	0/1:211:93,118:93:3317:118:4201:-314.754,0,-235.23	0/1:67:35,32:35:1248:32:1144:-83.1005,0,-92.4559	.:.:.:.:.:.:.:.	0/1:129:47,82:47:1670:82:2931:-225.001,0,-111.753	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	1/1:137:0,137:0:0:137:4854:-437.016,-41.2411,0	1/1:85:0,85:0:0:85:3021:-272.12,-25.5876,0	1/1:75:0,75:0:0:75:2662:-239.826,-22.5773,0	1/1:83:0,83:0:0:83:2934:-264.295,-24.9855,0	0/1:110:53,57:53:1891:57:2011:-148.139,0,-137.354	0/1:198:91,107:91:3264:107:3804:-282.945,0,-234.376	1/1:170:0,170:0:0:170:6024:-542.263,-51.1751,0	0/1:184:89,95:89:3183:95:3374:-248.482,0,-231.296	1/1:218:0,218:0:0:218:7797:-701.758,-65.6245,0	1/1:17:0,17:0:0:17:593:-53.6954,-5.11751,0	1/1:176:1,175:1:36:175:6210:-555.394,-49.383,0	1/1:60:1,59:1:36:59:2104:-186.031,-14.4635,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:85:0,85:0:0:85:3027:-272.656,-25.5876,0	1/1:64:0,64:0:0:64:2252:-202.932,-19.2659,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:54:0,54:0:0:54:1910:-172.176,-16.2556,0	1/1:137:1,135:1:36:135:4805:-429.008,-37.7016,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:318:0,318:0:0:318:11321:-1018.77,-95.7275,0	0/1:121:42,79:42:1512:79:2824:-217.975,0,-99.95	0/1:53:26,27:26:927:27:941:-69.0471,0,-67.7928	1/1:135:0,135:0:0:135:4783:-430.07,-40.6391,0	1/1:247:5,242:5:180:242:8556:-753.476,-57.8023,0	1/1:139:0,139:0:0:139:4982:-448.527,-41.8432,0	1/1:22:0,22:0:0:22:776:-70.1622,-6.62266,0	1/1:94:1,93:1:36:93:3289:-292.631,-24.6985,0	0/1:102:51,51:51:1800:51:1801:-131.607,0,-131.574	0/1:18:8,10:8:288:10:345:-25.9623,0,-20.8489	0/1:100:50,50:50:1761:50:1771:-129.569,0,-128.669	0/1:72:39,33:39:1392:33:1154:-82.4889,0,-103.905	1/1:143:0,143:0:0:143:5065:-455.946,-43.0473,0	0/1:222:65,157:65:2340:157:5586:-436.033,0,-144.03	0/1:101:41,60:41:1468:60:2141:-162.553,0,-102.012	0/1:112:54,58:54:1940:58:2038:-149.973,0,-141.161	1/1:8:0,8:0:0:8:288:-26.265,-2.40824,0	1/1:171:0,170:0:0:170:6054:-544.604,-51.1751,0	0/1:119:48,71:48:1724:71:2530:-192.128,0,-119.623	0/1:242:94,148:94:3341:148:5264:-401.048,0,-228.055	0/1:88:47,41:47:1675:41:1461:-105.293,0,-124.546	0/1:56:24,32:24:860:32:1148:-86.7722,0,-60.8642	0/1:122:54,68:54:1914:68:2401:-179.612,0,-135.81	0/1:160:68,92:68:2413:92:3242:-243.834,0,-169.26	0/1:38:20,18:20:701:18:639:-46.3991,0,-51.9726	1/1:89:0,89:0:0:89:3145:-283.277,-26.7917,0	1/1:83:0,83:0:0:83:2954:-266.085,-24.9855,0	1/1:38:1,37:1:36:37:1303:-113.972,-7.84087,0	0/1:67:36,31:36:1292:31:1095:-78.6901,0,-96.4148	0/1:74:41,33:41:1464:33:1167:-83.0318,0,-109.78	1/1:168:0,168:0:0:168:5959:-536.417,-50.573,0	1/1:130:1,129:1:36:129:4625:-412.812,-35.5356,0
chr01	3220130	.	T	A	36204.3	PASS	AB=0.480499;ABP=17.8312;AC=37;AF=0.198925;AN=186;AO=2169;CIGAR=1X;DP=10004;DPB=10004;DPRA=1.33127;EPP=4669.6;EPPR=16944.9;GTI=0;LEN=1;MEANALT=1;MQM=59.5339;MQMR=59.9777;NS=93;NUMALT=1;ODDS=1.37374;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77696;QR=279988;RO=7834;RPL=2164;RPP=4669.6;RPPR=16944.9;RPR=5;RUN=1;SAF=2169;SAP=4712.93;SAR=0;SRF=7834;SRP=17014.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:151:72,79:72:2580:79:2825:-209.013,0,-186.994	0/0:139:139,0:139:4976:0:0:0,-41.8432,-447.989	0/0:231:231,0:231:8271:0:0:0,-69.5379,-744.399	0/0:88:88,0:88:3151:0:0:0,-26.4906,-283.814	0/0:71:71,0:71:2523:0:0:0,-21.3731,-227.322	0/0:246:246,0:246:8791:0:0:0,-74.0534,-791.177	0/0:167:166,1:166:5910:1:36:0,-46.6737,-528.411	0/1:88:45,43:45:1607:43:1544:-112.734,0,-118.429	0/0:144:144,0:144:5150:0:0:0,-43.3483,-463.638	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:80:79,0:79:2825:0:0:0,-23.7814,-254.127	0/1:92:49,43:49:1752:43:1533:-110.353,0,-130.269	0/0:48:47,1:47:1680:1:36:0,-10.8512,-147.889	0/1:78:39,39:39:1381:39:1396:-102.456,0,-101.106	0/0:58:58,0:58:2070:0:0:0,-17.4597,-186.569	0/0:59:59,0:59:2102:0:0:0,-17.7608,-189.44	0/1:85:54,31:54:1889:31:1112:-74.8023,0,-144.696	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.847	0/0:280:277,3:277:9939:3:108:0,-74.2132,-884.368	0/1:154:79,75:79:2814:75:2684:-195.307,0,-207.14	0/1:85:32,53:32:1148:53:1889:-144.694,0,-78.0423	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/1:153:79,74:79:2827:74:2652:-192.359,0,-208.61	0/0:86:85,1:85:3037:1:36:0,-22.2903,-269.96	0/0:365:365,0:365:13068:0:0:0,-109.876,-1175.93	0/1:293:151,142:151:5399:142:5096:-369.307,0,-397.839	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.658	0/0:285:285,0:285:10198:0:0:0,-85.7935,-917.743	0/0:119:119,0:119:4246:0:0:0,-35.8226,-382.319	0/1:108:72,36:72:2575:36:1288:-83.3322,0,-199.402	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:217:102,115:102:3652:115:4132:-306.725,0,-263.553	0/1:142:79,63:79:2832:63:2241:-159.149,0,-212.344	0/1:68:39,29:39:1404:29:1040:-73.4361,0,-106.189	.:.:.:.:.:.:.:.	0/1:170:103,67:103:3704:67:2408:-165.785,0,-282.385	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871	0/0:92:92,0:92:3264:0:0:0,-27.6948,-293.98	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.661	0/0:145:145,0:145:5187:0:0:0,-43.6493,-466.968	0/1:107:51,56:51:1828:56:2012:-149.127,0,-132.591	0/1:171:114,57:114:4058:57:2048:-133.107,0,-313.932	0/1:134:62,72:62:2224:72:2565:-190.756,0,-160.016	0/1:114:75,39:75:2700:39:1400:-91.9818,0,-208.926	0/0:162:162,0:162:5796:0:0:0,-48.7669,-521.752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:162:162,0:162:5778:0:0:0,-48.7669,-520.136	0/0:47:46,1:46:1652:1:36:0,-10.5538,-145.374	0/0:20:20,0:20:704:0:0:0,-6.0206,-63.6845	0/0:131:131,0:131:4681:0:0:0,-39.4349,-421.45	0/0:74:71,3:71:2544:3:108:0,-12.201,-219.136	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.425	0/0:110:109,1:109:3871:1:36:0,-29.515,-344.986	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:181:181,0:181:6462:0:0:0,-54.4864,-581.611	0/1:233:116,117:116:4146:117:4200:-307.97,0,-303.183	0/1:40:14,26:14:504:26:932:-72.1288,0,-33.6569	0/0:74:74,0:74:2632:0:0:0,-22.2762,-237.125	0/0:222:221,1:221:7887:1:36:0,-63.2304,-706.256	0/0:102:102,0:102:3644:0:0:0,-30.7051,-328.152	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:97:97,0:97:3471:0:0:0,-29.1999,-312.601	0/1:90:47,43:47:1679:43:1531:-110.986,0,-124.304	0/1:19:8,11:8:279:11:392:-29.9001,0,-19.728	0/1:83:38,45:38:1356:45:1608:-119.935,0,-97.355	0/1:58:30,28:30:1061:28:996:-72.4592,0,-78.3396	0/0:173:173,0:173:6188:0:0:0,-52.0782,-557.016	0/1:232:113,119:113:4043:119:4259:-313.63,0,-294.218	0/1:112:69,43:69:2451:43:1548:-105.878,0,-187.13	0/1:136:82,54:82:2921:54:1935:-133.486,0,-222.184	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:136:136,0:136:4880:0:0:0,-40.9401,-439.351	0/1:136:69,67:69:2433:67:2408:-175.999,0,-178.285	0/1:291:127,164:127:4564:164:5869:-440.622,0,-323.324	0/1:124:67,57:67:2408:57:2048:-147.259,0,-179.648	0/1:60:33,27:33:1173:27:956:-68.2935,0,-87.8138	0/1:110:55,55:55:1972:55:1980:-145.339,0,-144.639	0/1:176:93,83:93:3319:83:2984:-215.784,0,-245.947	0/1:49:24,25:24:864:25:900:-66.5557,0,-63.3321	0/0:67:67,0:67:2387:0:0:0,-20.169,-214.817	0/0:72:72,0:72:2552:0:0:0,-21.6742,-229.929	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/1:47:20,27:20:716:27:957:-72.2922,0,-50.6193	0/1:68:22,46:22:783:46:1644:-127.772,0,-50.3229	0/0:104:104,0:104:3731:0:0:0,-31.3071,-335.989	0/0:139:138,1:138:4935:1:36:0,-38.2449,-440.702
chr01	3220152	.	A	G	94906.4	PASS	AB=0.468019;ABP=86.2059;AC=39;AF=0.207447;AN=188;AO=4429;CIGAR=1X;DP=21758;DPB=21758;DPRA=1.5374;EPP=9620.46;EPPR=37608.6;GTI=0;LEN=1;MEANALT=1.16949;MQM=56.9826;MQMR=59.9689;NS=94;NUMALT=1;ODDS=6.33311;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153963;QR=614233;RO=17318;RPL=2054;RPP=53.5298;RPPR=261.573;RPR=2375;RUN=1;SAF=2054;SAP=53.5298;SAR=2375;SRF=7941;SRP=261.573;SRR=9377;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:89:89,0:89:3126:0:0:0,-26.7917,-281.563	0/1:324:158,166:158:5546:166:5795:-423.796,0,-401.738	0/0:332:332,0:332:11802:0:0:0,-99.942,-1062.05	0/0:551:549,2:549:19516:2:72:0,-159.033,-1749.15	0/0:160:160,0:160:5680:0:0:0,-48.1648,-511.322	0/0:118:118,0:118:4159:0:0:0,-35.5215,-374.496	0/0:436:436,0:436:15436:0:0:0,-131.249,-1388.96	0/0:409:405,3:405:14322:3:108:0,-113.075,-1278.65	0/1:157:74,83:74:2629:83:2884:-212.116,0,-189.595	0/0:219:219,0:219:7808:0:0:0,-65.9256,-702.75	0/0:192:192,0:192:6805:0:0:0,-57.7978,-612.528	0/0:170:170,0:170:6007:0:0:0,-51.1751,-540.742	0/1:175:97,78:97:3442:78:2684:-188.978,0,-257.314	0/0:182:180,2:180:6295:2:64:0,-48.7088,-560.571	0/1:146:81,65:81:2892:65:2226:-156.592,0,-216.564	0/0:128:128,0:128:4550:0:0:0,-38.5318,-409.669	0/0:163:163,0:163:5775:0:0:0,-49.0679,-519.861	0/1:154:90,64:90:3185:64:2263:-157.448,0,-240.516	0/0:122:121,1:121:4270:1:36:0,-33.1274,-380.882	0/0:615:608,6:608:21552:6:203:0,-166.593,-1920.36	0/1:273:148,125:148:5227:125:4367:-310.436,0,-388.392	0/1:206:69,137:69:2451:137:4762:-366.161,0,-158.833	0/0:230:229,1:229:8121:1:36:0,-65.6386,-727.203	0/1:243:134,109:134:4766:109:3747:-263.27,0,-355.949	0/0:171:170,1:170:6045:1:36:0,-47.8779,-540.556	0/0:828:825,3:825:29363:3:108:0,-239.178,-2631.73	0/1:518:260,258:260:9227:258:8954:-648.92,0,-674.469	0/0:76:75,1:75:2652:1:36:0,-19.28,-235.327	0/0:671:671,0:671:23737:0:0:0,-201.991,-2135.72	0/0:224:223,1:223:7929:1:36:0,-63.8375,-710.04	0/1:318:182,135:182:6441:135:4698:-326.601,0,-483.91	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/1:14:11,3:11:388:3:108:-5.85141,0,-31.0429	0/0:24:24,0:24:836:0:0:0,-7.22472,-75.5547	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:395:210,185:210:7439:185:6342:-451.685,0,-550.652	0/1:309:175,134:175:6220:134:4663:-325.672,0,-466.881	0/1:173:103,70:103:3655:70:2412:-164.977,0,-277.078	0/1:10:3,7:3:108:7:252:-19.8592,0,-7.06487	0/1:378:219,159:219:7770:159:5568:-386.784,0,-585.542	0/0:101:101,0:101:3583:0:0:0,-30.404,-322.679	0/0:292:292,0:292:10316:0:0:0,-87.9008,-928.375	0/0:192:192,0:192:6811:0:0:0,-57.7978,-613.062	0/0:137:137,0:137:4845:0:0:0,-41.2411,-436.181	0/0:227:227,0:227:8076:0:0:0,-68.3338,-726.813	0/1:224:104,120:104:3705:120:4182:-308.299,0,-266.221	0/1:375:218,157:218:7796:157:5550:-386.23,0,-588.783	0/1:265:135,130:135:4763:130:4528:-327.65,0,-349.056	0/1:302:185,117:185:6606:117:4139:-281.324,0,-503.707	0/0:363:363,0:363:12904:0:0:0,-109.274,-1161.18	0/0:33:33,0:33:1161:0:0:0,-9.93399,-104.794	0/0:331:329,1:329:11725:1:36:0,-96.1014,-1051.52	0/0:160:157,2:157:5588:2:59:0,-42.5989,-497.419	0/0:39:39,0:39:1368:0:0:0,-11.7402,-123.416	0/0:310:308,1:308:10918:1:36:0,-89.7833,-978.921	0/0:139:134,5:134:4766:5:143:0,-28.6898,-415.946	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:40:18,22:18:640:22:765:-57.05,0,-45.8881	0/0:169:169,0:169:5976:0:0:0,-50.8741,-537.891	0/0:247:244,3:244:8679:3:104:0,-64.6516,-771.405	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/0:412:412,0:412:14640:0:0:0,-124.024,-1316.59	0/1:455:263,192:263:9330:192:6764:-471.589,0,-702.7	0/1:138:84,54:84:2976:54:1856:-125.598,0,-226.53	0/0:203:203,0:203:7216:0:0:0,-61.1091,-649.491	0/0:515:511,4:511:18196:4:144:0,-141.724,-1623.93	0/0:269:265,4:265:9349:4:144:0,-67.6706,-828.079	0/0:84:84,0:84:2991:0:0:0,-25.2865,-269.422	0/0:200:200,0:200:7128:0:0:0,-60.206,-641.576	0/1:182:96,86:96:3352:86:2988:-214.129,0,-247.024	0/1:60:29,31:29:1036:31:1082:-79.4251,0,-75.4921	0/1:178:91,87:91:3220:87:3016:-217.888,0,-236.439	0/1:122:67,55:67:2362:55:1920:-136.239,0,-176.11	0/0:423:420,2:420:14885:2:72:0,-120.558,-1332.43	0/1:453:241,212:241:8565:212:7406:-529.338,0,-634.483	0/1:272:134,138:134:4740:138:4804:-349.809,0,-344.823	0/1:262:153,109:153:5432:109:3747:-258.119,0,-410.134	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:272:271,1:271:9597:1:36:0,-78.287,-860.099	0/1:303:179,123:179:6356:123:4320:-297.307,0,-480.901	0/1:587:294,291:294:10411:291:10167:-737.385,0,-760.449	0/1:226:124,102:124:4394:102:3550:-251.567,0,-327.559	0/1:174:87,87:87:3070:87:3002:-217.646,0,-224.149	0/1:204:103,100:103:3639:100:3420:-246.484,0,-266.284	0/1:314:165,149:165:5825:149:5096:-364.013,0,-429.845	0/1:93:43,50:43:1524:50:1701:-124.581,0,-109.457	0/0:136:136,0:136:4844:0:0:0,-40.9401,-436.114	0/0:154:154,0:154:5450:0:0:0,-46.3586,-490.632	0/0:153:153,0:153:5417:0:0:0,-46.0576,-487.664	0/1:208:98,110:98:3415:110:3790:-278.299,0,-244.949	0/1:135:52,83:52:1844:83:2877:-218.234,0,-125.601	0/0:285:285,0:285:10086:0:0:0,-85.7935,-907.309	0/0:261:259,2:259:9247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chr01	3220172	.	CAGGA	CAGGG,TAGGG	251717	PASS	AB=0.5144,0.4758;ABP=12.0158,28.4443;AC=149,39;AF=0.792553,0.207447;AN=188;AO=9236,2391;CIGAR=4M1X,1X3M1X;DP=11726;DPB=11725.8;DPRA=0,1.3028;EPP=19738.6,5091.29;EPPR=7.35324;GTI=0;LEN=1,5;MEANALT=2.38298,3.1087;MQM=59.977,54.721;MQMR=60;NS=94;NUMALT=2;ODDS=8.75797;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,32;PQR=0;PRO=0;QA=327923,83180;QR=71;RO=2;RPL=9199,2379;RPP=19738.6,5091.29;RPPR=7.35324;RPR=37,12;RUN=1,1;SAF=0,0;SAP=20058.7,5195;SAR=9236,2391;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26,0:0:0:26,0:916,0:-82.7555,-7.82678,0,-82.7555,-7.82678,-82.7555	1/2:178:0,84,94:0:0:84,94:2999,3226:-506.426,-261.921,-236.635,-244.855,0,-216.558	1/1:196:0,195,0:0:0:195,0:6902,0:-620.893,-58.7009,0,-620.893,-58.7009,-620.893	1/1:318:0,317,1:0:0:317,1:11347,36:-1020.75,-95.4265,0,-1017.81,-92.1319,-1017.51	1/1:71:0,69,0:0:0:69,0:2446,0:-220.035,-20.7711,0,-220.035,-20.7711,-220.035	1/1:44:0,44,0:0:0:44,0:1566,0:-141.231,-13.2453,0,-141.231,-13.2453,-141.231	1/1:187:0,186,0:0:0:186,0:6563,0:-590.431,-55.9916,0,-590.431,-55.9916,-590.431	1/1:235:0,234,0:0:0:234,0:8250,0:-742.142,-70.441,0,-742.142,-70.441,-742.142	1/2:67:0,25,42:0:0:25,42:900,1476:-193.5,-120.061,-112.536,-73.7953,0,-61.152	1/1:66:0,66,0:0:0:66,0:2331,0:-210.05,-19.868,0,-210.05,-19.868,-210.05	1/1:123:0,122,0:0:0:122,0:4380,0:-394.012,-36.7257,0,-394.012,-36.7257,-394.012	1/1:85:0,85,0:0:0:85,0:3015,0:-271.582,-25.5876,0,-271.582,-25.5876,-271.582	1/2:85:0,47,37:0:0:47,37:1667,1305:-241.973,-106.158,-92.0097,-135.818,0,-124.68	1/1:137:0,136,0:0:0:136,0:4848,0:-436.134,-40.9401,0,-436.134,-40.9401,-436.134	1/2:70:0,41,28:0:0:41,28:1472,972:-199.027,-78.9448,-66.6025,-120.074,0,-111.646	1/1:72:0,71,0:0:0:71,0:2516,0:-226.39,-21.3731,0,-226.39,-21.3731,-226.39	1/1:110:0,109,0:0:0:109,0:3880,0:-349.08,-32.8123,0,-349.08,-32.8123,-349.08	1/2:74:0,37,37:0:0:37,37:1332,1303:-214.916,-106.228,-95.0896,-109.044,0,-97.9062	1/1:82:0,82,0:0:0:82,0:2913,0:-262.403,-24.6845,0,-262.403,-24.6845,-262.403	1/1:323:0,321,2:0:0:321,2:11352,66:-1021.24,-96.6306,0,-1015.91,-90.9678,-1015.31	1/2:126:0,68,58:0:0:68,58:2391,2019:-358.878,-164.249,-143.779,-194.978,0,-177.519	1/2:128:0,38,90:0:0:38,90:1348,3113:-362.561,-252.732,-241.293,-110.181,0,-83.0884	1/1:145:0,143,0:0:0:143,0:5060,0:-455.299,-43.0473,0,-455.299,-43.0473,-455.299	1/2:104:0,57,45:0:0:57,45:2017,1575:-291.855,-127.562,-110.403,-164.333,0,-150.787	1/1:82:0,80,0:0:0:80,0:2840,0:-255.578,-24.0824,0,-255.578,-24.0824,-255.578	1/1:447:0,445,0:0:0:445,0:15831,0:-1424.23,-133.958,0,-1424.23,-133.958,-1424.23	1/2:229:0,108,120:0:0:108,120:3841,4168:-651.295,-338.27,-305.758,-313.017,0,-276.894	1/1:30:0,30,0:0:0:30,0:1060,0:-95.7113,-9.0309,0,-95.7113,-9.0309,-95.7113	1/1:371:0,369,0:0:0:369,0:13123,0:-1180.55,-111.08,0,-1180.55,-111.08,-1180.55	1/1:105:0,100,1:0:0:100,1:3573,36:-321.482,-30.103,0,-318.549,-27.1533,-318.248	1/2:218:0,111,105:0:0:111,105:3972,3643:-619.586,-295.681,-262.267,-323.956,0,-292.348	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:26:0,26,0:0:0:26,0:920,0:-83.1171,-7.82678,0,-83.1171,-7.82678,-83.1171	1/2:8:0,5,3:0:0:5,3:180,108:-23.85,-9.16274,-7.65759,-15.0469,0,-14.1438	1/1:17:0,17,0:0:0:17,0:604,0:-54.6906,-5.11751,0,-54.6906,-5.11751,-54.6906	1/1:17:0,17,0:0:0:17,0:600,0:-54.3292,-5.11751,0,-54.3292,-5.11751,-54.3292	1/2:192:1,106,84:1:35:106,84:3760,2944:-542.493,-236.455,-207.393,-303.489,0,-281.05	1/2:168:0,94,70:0:0:94,70:3327,2448:-469.515,-198.513,-170.217,-271.013,0,-249.941	1/2:105:0,59,45:0:0:59,45:2066,1558:-294.393,-126.294,-108.533,-168.087,0,-154.541	1/2:10:0,3,7:0:0:3,7:108,251:-29.4856,-20.6721,-19.7691,-9.17208,0,-7.06487	1/2:211:0,111,99:0:0:111,99:3920,3462:-600.383,-281.153,-247.739,-319.222,0,-289.42	1/1:49:0,49,0:0:0:49,0:1760,0:-158.684,-14.7505,0,-158.684,-14.7505,-158.684	1/1:149:0,149,0:0:0:149,0:5259,0:-473.448,-44.8535,0,-473.448,-44.8535,-473.448	1/1:97:0,97,0:0:0:97,0:3456,0:-311.25,-29.1999,0,-311.25,-29.1999,-311.25	1/1:69:0,69,0:0:0:69,0:2436,0:-219.497,-20.7711,0,-219.497,-20.7711,-219.497	1/1:76:0,75,0:0:0:75,0:2651,0:-238.469,-22.5773,0,-238.469,-22.5773,-238.469	1/2:125:0,61,63:0:0:61,63:2179,2208:-356.828,-179.168,-160.805,-177.707,0,-158.742	1/2:194:0,91,102:0:0:91,102:3223,3554:-551.17,-288.629,-261.235,-262.544,0,-231.839	1/2:130:0,69,61:0:0:69,61:2402,2102:-366.238,-170.919,-150.148,-195.665,0,-177.302	1/2:189:0,106,79:0:0:106,79:3744,2764:-529.502,-224.599,-192.69,-304.943,0,-281.161	1/1:199:0,199,0:0:0:199,0:7028,0:-632.585,-59.905,0,-632.585,-59.905,-632.585	1/1:24:0,23,0:0:0:23,0:824,0:-74.1238,-6.92369,0,-74.1238,-6.92369,-74.1238	1/1:162:0,160,0:0:0:160,0:5685,0:-511.442,-48.1648,0,-511.442,-48.1648,-511.442	1/1:109:0,108,0:0:0:108,0:3835,0:-345.009,-32.5112,0,-345.009,-32.5112,-345.009	1/1:17:0,17,0:0:0:17,0:600,0:-54.3292,-5.11751,0,-54.3292,-5.11751,-54.3292	1/1:166:0,159,1:0:0:159,1:5609,31:-504.594,-47.8638,0,-502.106,-45.3818,-501.805	1/1:64:0,64,0:0:0:6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chr01	3244716	.	C	T	218564	PASS	AB=0.477093;ABP=30.6669;AC=148;AF=0.787234;AN=188;AO=10267;CIGAR=1X;DP=13469;DPB=13469;DPRA=144.817;EPP=22080.9;EPPR=6912.68;GTI=4;LEN=1;MEANALT=1.04301;MQM=59.7409;MQMR=59.8552;NS=94;NUMALT=1;ODDS=1.28481;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=365855;QR=112727;RO=3198;RPL=10241;RPP=22072.3;RPPR=6912.68;RPR=26;RUN=1;SAF=10266;SAP=22288.8;SAR=1;SRF=3198;SRP=6947.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49:0:0:49:1742:-157.057,-14.7505,0	0/1:170:90,80:90:3187:80:2863:-206.732,0,-235.881	1/1:181:0,181:0:0:181:6459:-580.517,-54.4864,0	1/1:462:1,461:1:32:461:16459:-1477.68,-135.877,0	1/1:153:1,152:1:32:152:5409:-483.711,-42.8583,0	1/1:46:0,46:0:0:46:1626:-146.627,-13.8474,0	1/1:105:0,105:0:0:105:3741:-336.843,-31.6082,0	1/1:198:0,198:0:0:198:6996:-629.654,-59.6039,0	0/1:102:33,69:33:1129:69:2448:-189.857,0,-71.2072	1/1:138:0,137:0:0:137:4916:-442.34,-41.2411,0	1/1:65:0,65:0:0:65:2327:-209.661,-19.567,0	1/1:126:0,126:0:0:126:4470:-402.469,-37.9298,0	0/1:85:45,40:45:1612:40:1427:-103.138,0,-119.765	1/1:87:0,87:0:0:87:3059:-275.046,-26.1896,0	0/1:108:47,61:47:1638:61:2171:-163.141,0,-115.193	1/1:67:0,67:0:0:67:2400:-216.215,-20.169,0	1/1:75:0,75:0:0:75:2658:-239.028,-22.5773,0	0/1:57:26,31:26:923:31:1104:-82.5119,0,-66.2281	1/1:50:0,50:0:0:50:1759:-158.589,-15.0515,0	1/1:494:1,493:1:36:493:17612:-1579.99,-145.117,0	0/1:216:112,104:112:3940:104:3680:-266.323,0,-289.739	0/1:217:155,62:155:5453:62:2228:-135.458,0,-425.573	1/1:83:0,83:0:0:83:2971:-267.621,-24.9855,0	0/1:155:76,79:76:2654:79:2811:-206.504,0,-192.446	1/1:154:1,153:1:36:153:5442:-486.306,-42.7603,0	1/1:395:0,395:0:0:395:14109:-1268.56,-118.907,0	0/1:411:221,190:221:7822:190:6765:-484.698,0,-580.275	1/1:32:0,32:0:0:32:1099:-99.2115,-9.63296,0	1/1:705:5,700:5:180:700:25008:-2233.33,-195.674,0	1/1:143:0,143:0:0:143:5100:-459.098,-43.0473,0	0/1:128:60,68:60:2116:68:2433:-180.65,0,-152.178	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	0/1:14:6,8:6:208:8:288:-22.053,0,-14.8447	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:343:175,168:175:6165:168:5952:-432.456,0,-451.246	0/1:174:72,102:72:2528:102:3647:-276.021,0,-175.387	0/1:86:51,35:51:1787:35:1247:-86.6231,0,-135.22	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:239:141,98:141:4965:98:3505:-243.713,0,-375.052	1/1:39:0,39:0:0:39:1378:-123.984,-11.7402,0	1/1:229:0,229:0:0:229:8164:-734.283,-68.9359,0	1/1:96:0,96:0:0:96:3432:-309.076,-28.8989,0	1/1:80:0,80:0:0:80:2801:-252.296,-24.0824,0	1/1:144:0,144:0:0:144:5123:-461.211,-43.3483,0	0/1:198:93,105:93:3294:105:3707:-273.771,0,-236.578	0/1:310:174,136:174:6174:136:4869:-345.006,0,-462.438	0/1:194:94,100:94:3299:100:3576:-263.631,0,-238.71	0/1:189:90,99:90:3167:99:3526:-260.476,0,-228.31	1/1:241:3,238:3:108:238:8509:-755.722,-62.4731,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:220:2,218:2:72:218:7790:-693.821,-59.3899,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:227:1,226:1:27:226:8032:-719.95,-65.634,0	1/1:45:0,45:0:0:45:1612:-144.874,-13.5464,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:28:13,15:13:468:15:536:-40.146,0,-34.0308	1/1:73:0,73:0:0:73:2601:-234.306,-21.9752,0	1/1:155:1,154:1:36:154:5471:-488.879,-43.0614,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:306:3,303:3:108:303:10825:-963.81,-82.0528,0	0/1:291:171,120:171:6085:120:4266:-296.512,0,-460.109	0/1:114:51,63:51:1810:63:2259:-169.252,0,-128.483	1/1:148:0,147:0:0:147:5176:-465.703,-44.2514,0	1/1:180:1,179:1:36:179:6393:-570.897,-50.5871,0	1/1:158:2,156:2:72:156:5576:-494.629,-40.726,0	1/1:29:0,29:0:0:29:1019:-92.0191,-8.72987,0	1/1:99:0,98:0:0:98:3487:-313.651,-29.5009,0	0/1:109:54,55:54:1901:55:1956:-143.499,0,-138.541	0/1:25:16,9:16:572:9:324:-21.9801,0,-44.2877	0/1:176:82,94:82:2903:94:3348:-248.497,0,-208.508	0/1:103:59,44:59:2094:44:1576:-111.125,0,-157.722	1/1:176:3,173:3:99:173:6129:-542.434,-43.7447,0	0/1:309:151,158:151:5353:158:5656:-416.051,0,-388.867	0/1:133:74,59:74:2594:59:2116:-150.664,0,-193.653	0/1:157:93,64:93:3285:64:2283:-158.47,0,-248.592	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	1/1:206:0,206:0:0:206:7324:-659.182,-62.0122,0	0/1:246:124,122:124:4373:122:4366:-319.047,0,-319.693	0/1:269:135,134:135:4760:134:4795:-350.725,0,-347.584	0/1:125:50,75:50:1770:75:2687:-204.425,0,-121.953	0/1:68:38,30:38:1351:30:1070:-76.1411,0,-101.413	0/1:101:46,54:46:1585:54:1917:-142.07,0,-112.472	0/1:195:108,87:108:3750:87:3128:-223.017,0,-278.99	0/1:57:35,22:35:1230:22:788:-54.0754,0,-93.8437	1/1:111:0,111:0:0:111:3953:-353.384,-33.4143,0	1/1:108:0,108:0:0:108:3871:-348.551,-32.5112,0	1/1:46:0,46:0:0:46:1623:-146.328,-13.8474,0	0/1:86:52,34:52:1798:34:1193:-81.7837,0,-136.182	0/1:80:59,21:59:2074:21:744:-42.7093,0,-162.845	1/1:186:0,186:0:0:186:6636:-597.245,-55.9916,0	1/1:189:0,189:0:0:189:6712:-603.587,-56.8947,0
chr01	3247964	.	T	A	163804	PASS	AB=0.484995;ABP=13.1109;AC=149;AF=0.792553;AN=188;AO=8520;CIGAR=1X;DP=11194;DPB=11194;DPRA=0;EPP=18504;EPPR=5794.33;GTI=1;LEN=1;MEANALT=1.06383;MQM=47.1958;MQMR=59.3221;NS=94;NUMALT=1;ODDS=1.711;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288641;QR=95664;RO=2667;RPL=0;RPP=18504;RPPR=5794.33;RPR=8520;RUN=1;SAF=8520;SAP=18504;SAR=0;SRF=2667;SRP=5794.33;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:101:0,101:0:0:101:3116:-276.991,-30.404,0	0/1:86:42,44:42:1504:44:1451:-103.787,0,-109.766	1/1:217:1,216:1:36:216:7491:-664.692,-61.7252,0	1/1:248:0,248:0:0:248:8641:-769.185,-74.6554,0	1/1:63:1,62:1:36:62:2038:-179.059,-15.3666,0	1/1:32:0,32:0:0:32:1048:-93.7858,-9.63296,0	1/1:104:0,102:0:0:102:3522:-313.908,-30.7051,0	1/1:123:0,123:0:0:123:4232:-377.854,-37.0267,0	0/1:159:64,95:64:2265:95:3131:-232.116,0,-156.173	1/1:67:0,67:0:0:67:2351:-208.26,-20.169,0	1/1:35:0,35:0:0:35:1187:-106.322,-10.5361,0	1/1:95:0,95:0:0:95:3374:-300.174,-28.5979,0	0/1:70:35,35:35:1260:35:1237:-89.6853,0,-92.5982	1/1:49:0,49:0:0:49:1578:-140.646,-14.7505,0	0/1:81:44,37:44:1580:37:1324:-93.7251,0,-118.076	1/1:44:0,44:0:0:44:1504:-134.818,-13.2453,0	1/1:23:0,23:0:0:23:782:-69.9718,-6.92369,0	0/1:33:21,12:21:756:12:413:-27.0768,0,-58.4332	1/1:17:0,17:0:0:17:544:-49.0543,-5.11751,0	1/1:278:0,278:0:0:278:9629:-854.385,-83.6863,0	0/1:683:320,363:320:11469:363:10943:-772.465,0,-825.854	0/1:151:110,41:110:3956:41:1429:-81.3406,0,-310.414	1/1:229:0,229:0:0:229:7653:-681.75,-68.9359,0	0/1:74:42,31:42:1508:31:1064:-72.1785,0,-113.31	1/1:95:1,94:1:36:94:3314:-291.619,-24.9996,0	1/1:185:0,185:0:0:185:6343:-563.28,-55.6906,0	0/1:286:127,159:127:4556:159:5394:-395.957,0,-324.037	1/1:35:0,35:0:0:35:1181:-105.923,-10.5361,0	1/1:282:0,282:0:0:282:9849:-873.169,-84.8905,0	1/1:200:0,200:0:0:200:6710:-599.081,-60.206,0	0/1:181:85,96:85:3044:96:3349:-242.846,0,-219.273	1/1:5:0,5:0:0:5:176:-16.0843,-1.50515,0	1/1:52:0,52:0:0:52:1634:-146.264,-15.6536,0	0/1:10:6,4:6:212:4:144:-10.2311,0,-16.4145	1/1:10:0,10:0:0:10:356:-32.2143,-3.0103,0	1/1:40:0,40:0:0:40:1325:-118.891,-12.0412,0	0/1:213:119,94:119:4264:94:3235:-223.772,0,-319.538	0/1:182:96,86:96:3452:86:2877:-202.202,0,-255.682	0/1:54:32,22:32:1148:22:769:-52.622,0,-87.0562	0/1:4:1,3:1:36:3:108:-8.8015,0,-2.39415	0/1:188:47,141:47:1684:141:4808:-372.409,0,-95.1979	1/1:18:0,18:0:0:18:625:-56.2052,-5.41854,0	1/1:197:0,197:0:0:197:6479:-579.44,-59.3029,0	1/1:71:0,71:0:0:71:2464:-219.793,-21.3731,0	1/1:35:0,35:0:0:35:1162:-103.359,-10.5361,0	1/1:180:3,176:3:108:176:6129:-534.306,-44.1667,0	0/1:150:92,58:92:3300:58:1930:-127.983,0,-251.641	0/1:122:37,85:37:1320:85:2900:-221.727,0,-82.3479	0/1:89:45,44:45:1612:44:1537:-110.758,0,-118.536	0/1:126:70,56:70:2520:56:1955:-135.653,0,-189.035	1/1:144:0,144:0:0:144:5087:-451.701,-43.3483,0	1/1:13:0,13:0:0:13:460:-41.0538,-3.91339,0	1/1:218:0,217:0:0:217:7315:-650.293,-65.3235,0	1/1:108:0,108:0:0:108:3719:-329.458,-32.5112,0	1/1:13:0,13:0:0:13:448:-40.4715,-3.91339,0	1/1:180:0,180:0:0:180:6186:-551.22,-54.1854,0	1/1:64:0,64:0:0:64:2133:-190.482,-19.2659,0	1/1:16:0,16:0:0:16:576:-51.7188,-4.81648,0	0/1:27:8,19:8:288:19:668:-51.8442,0,-18.1396	1/1:143:0,143:0:0:143:4828:-430.209,-43.0473,0	1/1:97:1,96:1:36:96:3360:-295.75,-25.6016,0	1/1:16:0,16:0:0:16:561:-50.0509,-4.81648,0	1/1:249:0,249:0:0:249:8690:-773.383,-74.9565,0	0/1:251:139,111:139:4988:111:3868:-267.741,0,-373.311	0/1:65:32,33:32:1137:33:1150:-83.2696,0,-83.0251	1/1:87:0,87:0:0:87:3002:-266.764,-26.1896,0	1/1:348:3,345:3:108:345:11036:-972.946,-94.6833,0	1/1:192:0,192:0:0:192:6501:-578.139,-57.7978,0	1/1:20:0,20:0:0:20:644:-57.9514,-6.0206,0	1/1:71:0,71:0:0:71:2468:-220.968,-21.3731,0	0/1:47:29,18:29:1044:18:625:-41.4531,0,-80.0814	0/1:31:19,12:19:684:12:428:-28.8564,0,-52.5299	0/1:235:132,103:132:4733:103:3590:-250.07,0,-354.657	0/1:87:32,55:32:1148:55:1923:-146.276,0,-77.4146	1/1:398:0,398:0:0:398:12873:-1145.93,-119.81,0	0/1:234:132,102:132:4744:102:3564:-246.848,0,-356.238	0/1:75:42,33:42:1508:33:1142:-79.815,0,-113.376	0/1:100:45,55:45:1612:55:1949:-143.141,0,-115.235	1/1:13:0,13:0:0:13:404:-36.5063,-3.91339,0	1/1:137:0,137:0:0:137:4700:-419.947,-41.2411,0	0/1:115:71,44:71:2552:44:1452:-95.7533,0,-194.819	0/1:341:167,173:167:6000:173:6098:-440.985,0,-437.138	0/1:51:35,16:35:1256:16:541:-33.3186,0,-97.9928	0/1:72:36,36:36:1296:36:1262:-91.2535,0,-95.2249	0/1:61:33,28:33:1188:28:944:-66.229,0,-88.8634	0/1:138:79,59:79:2836:59:2024:-138.505,0,-213.818	0/1:30:21,9:21:752:9:320:-19.9095,0,-58.9577	1/1:71:0,71:0:0:71:2298:-206.185,-21.3731,0	1/1:81:0,81:0:0:81:2805:-250.827,-24.3834,0	1/1:38:0,38:0:0:38:1261:-113.141,-11.4391,0	0/1:149:84,65:84:3016:65:2181:-150.206,0,-226.771	0/1:114:86,28:86:3076:28:932:-48.9003,0,-242.669	1/1:109:0,109:0:0:109:3623:-322.62,-32.8123,0	1/1:73:0,73:0:0:73:2567:-229.02,-21.9752,0
chr01	3247988	.	T	C	45602.6	PASS	AB=0.501684;ABP=3.14195;AC=39;AF=0.207447;AN=188;AO=2692;CIGAR=1X;DP=11704;DPB=11704;DPRA=1.2766;EPP=5831.26;EPPR=19515.9;GTI=1;LEN=1;MEANALT=1.1087;MQM=59.3035;MQMR=47.2164;NS=94;NUMALT=1;ODDS=1.15782;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96409;QR=322856;RO=9002;RPL=2;RPP=5831.26;RPPR=19515.9;RPR=2690;RUN=1;SAF=2692;SAP=5848.61;SAR=0;SRF=9002;SRP=19550.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:109:109,0:109:3889:0:0:0,-32.8123,-344.188	0/1:88:46,42:46:1656:42:1508:-109.524,0,-121.14	0/0:225:224,1:224:8018:1:36:0,-64.1335,-710.41	0/0:268:268,0:268:9583:0:0:0,-80.676,-852.978	0/0:70:69,1:69:2480:1:36:0,-17.4738,-218.342	0/0:33:33,0:33:1188:0:0:0,-9.93399,-106.05	0/0:115:115,0:115:4128:0:0:0,-34.6184,-368.184	0/0:133:133,0:133:4780:0:0:0,-40.037,-426.332	0/1:166:106,60:106:3804:60:2156:-144.279,0,-290.592	0/0:66:66,0:66:2345:0:0:0,-19.868,-208.026	0/0:38:37,1:37:1328:1:36:0,-7.87233,-114.907	0/0:100:100,0:100:3600:0:0:0,-30.103,-319.541	0/1:72:37,35:37:1332:35:1256:-91.6359,0,-97.5717	0/0:50:50,0:50:1788:0:0:0,-15.0515,-159.392	0/1:80:37,43:37:1332:43:1527:-113.608,0,-94.7128	0/0:45:45,0:45:1616:0:0:0,-13.5463,-144.461	0/0:24:24,0:24:860:0:0:0,-7.22472,-76.9196	0/1:33:12,21:12:432:21:756:-58.4332,0,-28.7724	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.5701	0/0:292:291,0:291:10433:0:0:0,-87.5997,-923.879	0/1:724:396,328:396:14179:328:11750:-838.806,0,-1045.72	0/1:155:43,112:43:1525:112:4008:-313.85,0,-88.4537	0/0:245:245,0:245:8763:0:0:0,-73.7523,-779.704	0/1:77:34,42:34:1220:42:1512:-113.204,0,-84.932	0/0:97:96,1:96:3452:1:36:0,-25.6016,-303.67	0/0:203:203,0:203:7289:0:0:0,-61.1091,-646.099	0/1:294:164,130:164:5892:130:4653:-330.345,0,-437.306	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.025	0/0:299:299,0:299:10748:0:0:0,-90.008,-952.457	0/0:208:208,0:208:7423:0:0:0,-62.6142,-659.942	0/1:193:108,85:108:3865:85:3035:-215.193,0,-285.023	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4378	0/0:53:53,0:53:1904:0:0:0,-15.9546,-170.178	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.2311	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.4853	0/0:41:41,0:41:1476:0:0:0,-12.3422,-132.282	0/1:219:99,119:99:3545:119:4259:-317.038,0,-249.733	0/1:194:96,98:96:3444:98:3509:-257.512,0,-248.815	0/1:56:24,32:24:860:32:1135:-85.4702,0,-60.1506	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.8015	0/1:193:145,48:145:5204:48:1708:-95.8619,0,-405.978	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.3917	0/0:204:204,0:204:7344:0:0:0,-61.4101,-654.906	0/0:75:75,0:75:2692:0:0:0,-22.5772,-240.004	0/0:36:36,0:36:1292:0:0:0,-10.8371,-115.212	0/0:191:188,3:188:6744:3:108:0,-47.4216,-587.825	0/1:150:58,92:58:2088:92:3282:-250.355,0,-142.008	0/1:133:94,39:94:3380:39:1395:-85.3369,0,-259.745	0/1:93:47,46:47:1688:46:1641:-119.939,0,-122.95	0/1:131:61,69:61:2184:69:2476:-183.609,0,-154.489	0/0:150:150,0:150:5384:0:0:0,-45.1545,-477.772	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.7442	0/0:228:228,0:228:8174:0:0:0,-68.6348,-727.375	0/0:114:114,0:114:4084:0:0:0,-34.3174,-361.907	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.8921	0/0:186:185,0:185:6660:0:0:0,-55.6905,-592.689	0/0:65:65,0:65:2340:0:0:0,-19.5669,-208.706	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.7188	0/1:28:19,9:19:684:9:324:-20.7029,0,-52.9203	0/0:156:156,0:156:5569:0:0:0,-46.9607,-495.867	0/0:110:109,1:109:3920:1:36:0,-29.515,-345.602	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.3811	0/0:257:256,0:256:9204:0:0:0,-77.0637,-818.479	0/1:258:116,142:116:4130:142:5085:-379.967,0,-288.709	0/1:69:35,32:35:1260:32:1152:-83.5113,0,-92.4733	0/0:90:90,0:90:3217:0:0:0,-27.0927,-285.751	0/0:365:362,3:362:12953:3:108:0,-99.8008,-1139.95	0/0:202:201,0:201:7212:0:0:0,-60.507,-639.746	0/0:22:22,0:22:784:0:0:0,-6.62266,-69.9469	0/0:75:75,0:75:2700:0:0:0,-22.5772,-240.461	0/1:49:20,29:20:716:29:1044:-79.4794,0,-48.9441	0/1:34:13,21:13:468:21:756:-58.0753,0,-31.5092	0/1:242:111,131:111:3992:131:4691:-349.077,0,-282.523	0/1:90:58,32:58:2065:32:1140:-75.7804,0,-158.041	0/0:422:422,0:422:15097:0:0:0,-127.035,-1340.41	0/1:238:106,132:106:3812:132:4748:-355.419,0,-267.044	0/1:78:35,42:35:1260:42:1512:-112.834,0,-89.6132	0/1:102:57,45:57:2052:45:1612:-114.633,0,-151.712	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.4618	0/0:141:141,0:141:5072:0:0:0,-42.4452,-452.776	0/1:117:44,73:44:1584:73:2617:-199.772,0,-106.851	0/1:342:175,167:175:6258:167:5977:-434.765,0,-454.839	0/1:52:18,34:18:648:34:1224:-94.8135,0,-42.5093	0/1:72:36,36:36:1296:36:1296:-95.2249,0,-94.2472	0/1:63:30,33:30:1072:33:1188:-88.2614,0,-77.0146	0/1:139:60,79:60:2160:79:2836:-213.517,0,-150.159	0/1:34:12,22:12:428:22:792:-61.353,0,-28.4109	0/0:80:80,0:80:2872:0:0:0,-24.0824,-257.058	0/0:83:83,0:83:2988:0:0:0,-24.9855,-266.804	0/0:39:39,0:39:1404:0:0:0,-11.7402,-125.518	0/1:154:68,86:68:2444:86:3076:-230.657,0,-171.801	0/1:118:30,88:30:1080:88:3125:-245.88,0,-60.7965	0/0:112:112,0:112:4028:0:0:0,-33.7154,-357.841	0/0:76:76,0:76:2732:0:0:0,-22.8783,-243.684
chr01	3247999	.	G	A	188926	PASS	AB=0.502931;ABP=3.40485;AC=149;AF=0.792553;AN=188;AO=8974;CIGAR=1X;DP=11614;DPB=11614;DPRA=0;EPP=19429;EPPR=5735.7;GTI=1;LEN=1;MEANALT=1;MQM=47.2098;MQMR=59.4057;NS=94;NUMALT=1;ODDS=0.0298468;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=321645;QR=94075;RO=2640;RPL=8967;RPP=19429;RPPR=5735.7;RPR=7;RUN=1;SAF=8974;SAP=19489.8;SAR=0;SRF=2640;SRP=5735.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:105:0,105:0:0:105:3759:-333.033,-31.6082,0	0/1:88:42,46:42:1512:46:1643:-120.24,0,-109.884	1/1:224:1,223:1:36:223:7992:-708.545,-63.8324,0	1/1:264:0,264:0:0:264:9452:-841.158,-79.4719,0	1/1:70:1,69:1:32:69:2476:-218.395,-17.8728,0	1/1:32:0,32:0:0:32:1152:-102.829,-9.63296,0	1/1:114:0,114:0:0:114:4084:-364.047,-34.3174,0	1/1:133:0,133:0:0:133:4771:-425.274,-40.037,0	0/1:162:57,105:57:2036:105:3761:-287.943,0,-134.706	1/1:66:0,66:0:0:66:2355:-209.251,-19.868,0	1/1:38:0,38:0:0:38:1368:-122.038,-11.4391,0	1/1:101:0,101:0:0:101:3628:-322.066,-30.404,0	0/1:71:34,37:34:1208:37:1328:-97.5231,0,-87.6353	1/1:50:0,50:0:0:50:1767:-157.528,-15.0515,0	0/1:81:44,37:44:1536:37:1328:-94.065,0,-114.116	1/1:45:0,45:0:0:45:1607:-143.67,-13.5464,0	1/1:25:0,25:0:0:25:900:-80.4908,-7.52575,0	0/1:33:21,12:21:752:12:428:-28.4206,0,-58.0723	1/1:19:0,19:0:0:19:680:-61.2195,-5.71957,0	1/1:291:0,291:0:0:291:10435:-925.751,-87.5997,0	0/1:710:321,389:321:11412:389:13893:-1024.69,0,-812.745	0/1:151:106,45:106:3807:45:1616:-98.0716,0,-297.107	1/1:246:0,246:0:0:246:8808:-783.739,-74.0534,0	0/1:76:41,35:41:1468:35:1248:-87.5997,0,-109.537	1/1:100:1,99:1:36:99:3542:-312.24,-26.5047,0	1/1:202:0,202:0:0:202:7232:-641.469,-60.8081,0	0/1:291:128,163:128:4580:163:5848:-434.301,0,-324.534	1/1:37:0,37:0:0:37:1328:-119.025,-11.1381,0	1/1:298:0,298:0:0:298:10712:-948.895,-89.7069,0	1/1:205:0,205:0:0:205:7357:-654.082,-61.7112,0	0/1:195:85,110:85:3031:110:3939:-290.964,0,-214.231	1/1:5:0,5:0:0:5:180:-16.4378,-1.50515,0	1/1:52:0,52:0:0:52:1872:-167.309,-15.6536,0	0/1:10:6,4:6:216:4:144:-10.2311,0,-16.7802	1/1:11:0,11:0:0:11:392:-35.283,-3.31133,0	1/1:43:0,43:0:0:43:1548:-138.728,-12.9443,0	0/1:219:117,102:117:4156:102:3656:-259.626,0,-308.042	0/1:192:98,94:98:3504:94:3376:-243.336,0,-257.353	0/1:54:30,24:30:1068:24:860:-60.7527,0,-80.1764	0/1:4:1,3:1:36:3:108:-8.8015,0,-2.39415	0/1:189:47,142:47:1656:142:5096:-397.46,0,-92.3747	1/1:19:0,19:0:0:19:680:-60.8277,-5.71957,0	1/1:201:1,200:1:36:200:7158:-635.352,-56.9088,0	1/1:74:0,74:0:0:74:2656:-236.788,-22.2762,0	1/1:37:0,37:0:0:37:1324:-117.9,-11.1381,0	1/1:189:3,186:3:108:186:6674:-582.669,-46.8195,0	0/1:151:91,60:91:3249:60:2139:-146.308,0,-247.064	0/1:131:38,93:38:1338:93:3336:-256.443,0,-81.2529	0/1:92:44,48:44:1572:48:1724:-126.461,0,-114.063	0/1:132:71,61:71:2536:61:2178:-154.086,0,-188.669	1/1:152:0,152:0:0:152:5448:-483.612,-45.7566,0	1/1:13:0,13:0:0:13:468:-41.7442,-3.91339,0	1/1:229:0,229:0:0:229:8216:-730.379,-68.9359,0	1/1:114:0,114:0:0:114:4092:-362.43,-34.3174,0	1/1:16:0,16:0:0:16:572:-51.5411,-4.81648,0	1/1:184:0,184:0:0:184:6616:-589.495,-55.3895,0	1/1:65:0,65:0:0:65:2320:-207.154,-19.567,0	1/1:16:0,16:0:0:16:576:-51.7188,-4.81648,0	0/1:27:8,19:8:288:19:684:-53.2214,0,-18.1396	1/1:155:0,155:0:0:155:5552:-493.232,-46.6597,0	1/1:110:1,109:1:36:109:3920:-345.602,-29.515,0	1/1:16:0,16:0:0:16:572:-51.0365,-4.81648,0	1/1:255:0,255:0:0:255:9156:-814.508,-76.7627,0	0/1:256:140,116:140:4983:116:4155:-291.468,0,-371.414	0/1:69:33,36:33:1180:36:1281:-93.7394,0,-85.6921	1/1:88:0,88:0:0:88:3164:-281.317,-26.4906,0	1/1:356:3,353:3:108:353:12658:-1113.76,-97.0915,0	1/1:203:0,203:0:0:203:7267:-644.579,-61.1091,0	1/1:22:0,22:0:0:22:792:-70.642,-6.62266,0	1/1:74:0,74:0:0:74:2660:-237.039,-22.2762,0	0/1:48:28,20:28:1008:20:720:-49.598,0,-76.542	0/1:33:20,13:20:708:13:468:-31.8102,0,-54.1	0/1:240:130,110:130:4601:110:3952:-279.768,0,-341.646	0/1:86:29,57:29:1035:57:2032:-156.174,0,-67.5559	1/1:419:0,419:0:0:419:14977:-1330.23,-126.132,0	0/1:236:127,109:127:4543:109:3908:-276.505,0,-337.686	0/1:76:41,35:41:1464:35:1260:-90.2146,0,-109.135	0/1:102:44,58:44:1572:58:2080:-154.235,0,-111.035	1/1:14:0,14:0:0:14:504:-45.4618,-4.21442,0	1/1:138:0,138:0:0:138:4941:-441.189,-41.5421,0	0/1:113:69,44:69:2468:44:1580:-107.709,0,-187.866	0/1:344:167,177:167:5967:177:6344:-462.157,0,-433.293	0/1:50:32,18:32:1148:18:648:-43.1114,0,-88.5783	0/1:71:35,36:35:1256:36:1296:-94.5483,0,-91.9722	0/1:63:33,30:33:1188:30:1080:-77.7104,0,-88.2614	0/1:140:79,61:79:2824:61:2196:-153.068,0,-212.137	0/1:34:22,12:22:784:12:428:-28.4109,0,-60.6312	1/1:80:0,80:0:0:80:2851:-255.216,-24.0824,0	1/1:84:0,84:0:0:84:3013:-269.184,-25.2865,0	1/1:40:0,40:0:0:40:1432:-128.045,-12.0412,0	0/1:154:85,69:85:2982:69:2480:-175.017,0,-222.207	0/1:115:85,30:85:3011:30:1080:-61.6996,0,-236.548	1/1:110:0,110:0:0:110:3944:-350.517,-33.1133,0	1/1:76:0,76:0:0:76:2724:-242.977,-22.8783,0
chr01	3248010	.	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chr01	3329777	.	G	T	105987	PASS	AB=0.472601;ABP=25.5001;AC=146;AF=0.784946;AN=186;AO=5072;CIGAR=1X;DP=6894;DPB=6894;DPRA=0;EPP=11016.7;EPPR=3952.92;GTI=5;LEN=1;MEANALT=1.03226;MQM=59.9805;MQMR=59.9285;NS=93;NUMALT=1;ODDS=0.721117;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180814;QR=64894;RO=1819;RPL=5072;RPP=11016.7;RPPR=3952.92;RPR=0;RUN=1;SAF=0;SAP=11016.7;SAR=5072;SRF=0;SRP=3952.92;SRR=1819;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:41:23,18:23:824:18:648:-46.3097,0,-62.1411	1/1:261:0,261:0:0:261:9327:-839.378,-78.5688,0	1/1:170:0,170:0:0:170:6085:-547.75,-51.1751,0	0/1:51:5,46:5:176:46:1656:-133.976,0,-0.832489	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:73:0,73:0:0:73:2613:-235.258,-21.9752,0	1/1:109:0,109:0:0:109:3924:-353.35,-32.8123,0	0/1:101:54,47:54:1920:47:1669:-120.091,0,-142.673	1/1:56:0,56:0:0:56:1946:-175.407,-16.8577,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:49:0,49:0:0:49:1749:-157.693,-14.7505,0	0/1:53:26,27:26:923:27:964:-71.1217,0,-67.4322	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:38:19,18:19:676:18:648:-47.1539,0,-49.6703	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:16:12,4:12:424:4:144:-8.49714,0,-33.6799	1/1:28:0,28:0:0:28:993:-89.6825,-8.42884,0	1/1:70:0,70:0:0:70:2482:-223.628,-21.0721,0	0/1:108:48,60:48:1712:60:2152:-161.436,0,-121.854	0/1:99:57,42:57:2032:42:1455:-101.436,0,-153.351	1/1:81:0,81:0:0:81:2864:-257.995,-24.3834,0	0/1:74:47,27:47:1676:27:968:-65.1565,0,-128.846	1/1:80:0,80:0:0:80:2860:-257.638,-24.0824,0	0/1:212:113,99:113:4028:99:3540:-254.991,0,-298.889	0/1:205:101,103:101:3616:103:3665:-268.284,0,-263.876	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:204:0,204:0:0:204:7201:-648.102,-61.4101,0	1/1:106:0,106:0:0:106:3782:-340.58,-31.9092,0	0/1:103:60,43:60:2132:43:1540:-107.887,0,-161.142	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:11:4,7:4:125:7:248:-19.3529,0,-8.24729	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:137:72,65:72:2588:65:2332:-168.898,0,-191.926	0/1:153:81,71:81:2888:71:2486:-177.874,0,-214.041	0/1:44:24,20:24:851:20:720:-51.8835,0,-63.0335	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:76:38,38:38:1356:38:1330:-97.1174,0,-99.3548	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:156:0,156:0:0:156:5574:-501.781,-46.9607,0	1/1:22:0,22:0:0:22:788:-71.2439,-6.62266,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	0/1:96:52,44:52:1856:44:1549:-110.801,0,-138.421	0/1:135:62,73:62:2220:73:2620:-195.408,0,-159.381	0/1:100:56,44:56:1981:44:1580:-112.389,0,-148.374	0/1:129:67,62:67:2380:62:2224:-161.591,0,-175.622	1/1:129:0,129:0:0:129:4612:-415.245,-38.8329,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:139:0,139:0:0:139:4954:-446.008,-41.8432,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:89:0,89:0:0:89:3181:-286.513,-26.7917,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:19:9,10:9:320:10:360:-27.0247,0,-23.4228	1/1:76:0,76:0:0:76:2718:-244.863,-22.8783,0	1/1:85:1,84:1:36:84:2982:-265.012,-21.9893,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:154:92,62:92:3280:62:2209:-152.712,0,-249.062	0/1:69:28,41:28:1004:41:1472:-112.005,0,-69.9048	1/1:61:0,61:0:0:61:2160:-194.665,-18.3628,0	1/1:113:2,111:2:72:111:3949:-348.763,-27.1797,0	1/1:210:0,210:0:0:210:7408:-666.768,-63.2163,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:67:0,67:0:0:67:2366:-213.196,-20.169,0	0/1:47:29,18:29:1040:18:648:-44.5035,0,-79.766	0/1:30:18,12:18:648:12:428:-29.8279,0,-49.621	0/1:118:61,57:61:2176:57:2014:-146.008,0,-160.585	0/1:72:37,35:37:1332:35:1260:-92.0313,0,-98.4798	1/1:173:0,173:0:0:173:6105:-549.553,-52.0782,0	0/1:121:67,54:67:2396:54:1936:-138.092,0,-179.473	0/1:160:100,60:100:3572:60:2125:-143.352,0,-273.524	0/1:92:51,41:51:1836:41:1476:-105.441,0,-137.826	.:.:.:.:.:.:.:.	1/1:99:0,99:0:0:99:3520:-317.008,-29.802,0	0/1:88:48,40:48:1716:40:1425:-102.055,0,-128.235	0/1:125:60,65:60:2144:65:2317:-171.16,0,-155.599	0/1:50:18,32:18:644:32:1148:-88.5783,0,-43.2382	0/1:50:20,30:20:712:30:1080:-82.4618,0,-49.3552	0/1:17:10,7:10:356:7:248:-17.5467,0,-27.2637	0/1:75:40,35:40:1423:35:1256:-90.768,0,-105.789	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	0/1:119:64,55:64:2255:55:1972:-141.932,0,-167.388	0/1:39:32,7:32:1152:7:252:-11.2888,0,-92.25	1/1:6:0,6:0:0:6:211:-19.3333,-1.80618,0	1/1:44:0,44:0:0:44:1578:-142.311,-13.2453,0
chr01	3495613	.	C	T	3837.13	PASS	AB=0.317261;ABP=303.794;AC=35;AF=0.18617;AN=188;AO=332;CIGAR=1X;DP=2798;DPB=2798;DPRA=1.0498;EPP=639.696;EPPR=4886.46;GTI=2;LEN=1;MEANALT=1;MQM=41.994;MQMR=54.444;NS=94;NUMALT=1;ODDS=1.76236;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=11865;QR=87914;RO=2464;RPL=10;RPP=639.696;RPPR=4886.46;RPR=322;RUN=1;SAF=332;SAP=723.939;SAR=0;SRF=2464;SRP=5353.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.2626	0/1:14:11,3:11:396:3:108:-5.14499,0,-31.5171	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.032	0/0:55:54,1:54:1925:1:36:0,-13.0356,-169.632	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.1335	0/0:16:16,0:16:564:0:0:0,-4.81648,-50.9884	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.996	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.239	0/1:18:11,7:11:396:7:252:-15.9436,0,-30.488	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3758	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.1912	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.5442	0/1:24:16,8:16:564:8:288:-17.9449,0,-43.7554	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.289	0/1:23:16,7:16:576:7:252:-15.5217,0,-45.1073	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.9452	0/0:22:22,0:22:788:0:0:0,-6.62266,-70.7876	0/1:9:6,3:6:216:3:108:-6.87681,0,-16.8857	0/0:19:19,0:19:668:0:0:0,-5.71957,-60.1935	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.545	0/1:30:17,13:17:608:13:468:-31.8795,0,-45.9126	0/1:22:10,12:10:352:12:428:-31.5487,0,-24.9094	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.414	0/1:16:11,5:11:396:5:180:-11.2214,0,-31.1055	0/0:36:36,0:36:1277:0:0:0,-10.8371,-114.881	0/1:66:45,21:45:1604:21:741:-45.4457,0,-124.465	0/1:45:36,9:36:1279:9:324:-14.8913,0,-101.504	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.8183	0/0:64:64,0:64:2269:0:0:0,-19.2659,-203.868	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.051	0/1:34:24,10:24:864:10:360:-21.5594,0,-67.6788	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1759	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7511	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7517	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.1634	0/1:53:40,13:40:1436:13:464:-25.3368,0,-113.54	0/1:26:18,8:18:648:8:288:-17.8034,0,-50.7096	0/1:10:7,3:7:252:3:108:-6.70945,0,-19.9644	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/1:44:26,18:26:932:18:631:-42.0141,0,-70.6872	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.115	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.08	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.214	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3117	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.12	0/1:16:12,4:12:423:4:144:-7.94095,0,-33.5258	0/1:50:32,18:32:1148:18:635:-40.7511,0,-88.3699	0/1:23:16,7:16:576:7:252:-14.5616,0,-45.2018	0/1:10:6,4:6:212:4:144:-9.64986,0,-16.3748	0/0:46:46,0:46:1633:0:0:0,-13.8474,-147.11	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1166	0/0:56:56,0:56:2012:0:0:0,-16.8577,-179.737	0/0:57:57,0:57:2035:0:0:0,-17.1587,-182.875	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4215	0/0:56:56,0:56:1957:0:0:0,-16.8577,-176.17	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1228	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5504	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70093	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.286	0/0:58:57,1:57:2040:1:36:0,-13.9387,-180.05	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83179	0/0:65:64,0:64:2292:0:0:0,-19.2659,-205.175	0/1:40:32,8:32:1129:8:288:-13.1692,0,-89.7616	0/0:14:13,1:13:453:1:36:0,-0.733725,-37.569	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.7223	0/0:40:40,0:40:1432:0:0:0,-12.0412,-128.952	0/0:69:69,0:69:2448:0:0:0,-20.7711,-219.889	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.6743	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.6896	0/1:39:25,14:25:900:14:504:-32.9295,0,-69.5176	0/1:7:4,3:4:144:3:108:-7.38073,0,-11.1945	0/1:36:20,16:20:692:16:576:-38.7173,0,-51.5426	0/1:19:14,5:14:504:5:180:-10.029,0,-39.8541	0/0:48:47,0:47:1688:0:0:0,-14.1484,-150.787	0/1:43:34,9:34:1211:9:324:-15.953,0,-96.1558	0/1:81:54,27:54:1927:27:959:-58.1664,0,-148.28	0/1:33:19,14:19:676:14:504:-33.5529,0,-51.117	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9295	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.203	0/1:24:19,5:19:676:5:176:-8.53794,0,-53.5117	0/1:39:24,15:24:856:15:540:-35.4841,0,-65.5619	0/1:32:21,11:21:752:11:396:-25.4558,0,-58.2588	0/1:23:18,5:18:648:5:176:-8.58152,0,-51.1232	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2462	0/1:30:22,8:22:792:8:288:-16.6357,0,-62.5217	0/1:7:5,2:5:180:2:68:-4.13632,0,-14.4165	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.17	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.597	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.5113	0/1:41:34,7:34:1203:7:252:-9.44674,0,-95.5823	0/1:10:3,7:3:108:7:243:-18.2425,0,-7.0576	0/0:37:37,0:37:1301:0:0:0,-11.1381,-117.103	0/0:38:38,0:38:1360:0:0:0,-11.4391,-121.526
chr01	3504296	.	T	C	79166.3	PASS	AB=0.450135;ABP=59.0998;AC=148;AF=0.787234;AN=188;AO=3802;CIGAR=1X;DP=5241;DPB=5241;DPRA=28.1667;EPP=8258.95;EPPR=2185.68;GTI=6;LEN=1;MEANALT=1.04301;MQM=59.3488;MQMR=59.8592;NS=94;NUMALT=1;ODDS=0.447994;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135690;QR=50987;RO=1435;RPL=3802;RPP=8258.95;RPPR=2185.68;RPR=0;RUN=1;SAF=0;SAP=8258.95;SAR=3802;SRF=0;SRP=3119.07;SRR=1435;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:1008:-90.9835,-8.42884,0	0/1:49:21,28:21:729:28:1008:-76.2859,0,-51.1782	1/1:41:0,41:0:0:41:1468:-132.363,-12.3422,0	1/1:147:0,146:0:0:146:5248:-471.92,-43.9504,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:38:0,37:0:0:37:1317:-118.135,-11.1381,0	1/1:40:0,40:0:0:40:1427:-128.695,-12.0412,0	1/1:58:0,58:0:0:58:2059:-185.542,-17.4597,0	0/1:61:28,33:28:1000:33:1184:-88.4939,0,-71.9479	1/1:62:0,62:0:0:62:2209:-198.878,-18.6639,0	1/1:26:0,26:0:0:26:936:-84.531,-7.82678,0	1/1:66:0,66:0:0:66:2360:-212.278,-19.868,0	0/1:52:31,21:31:1112:21:752:-52.2997,0,-84.1319	1/1:38:0,38:0:0:38:1348:-121.3,-11.4391,0	0/1:41:23,18:23:812:18:640:-45.5871,0,-61.0587	1/1:38:0,38:0:0:38:1327:-119.708,-11.4391,0	1/1:26:0,26:0:0:26:908:-81.9778,-7.82678,0	0/1:20:9,11:9:324:11:396:-29.9444,0,-23.4149	1/1:14:0,14:0:0:14:500:-45.3353,-4.21442,0	1/1:95:2,93:2:72:93:3320:-292.055,-21.7611,0	0/1:54:27,27:27:956:27:964:-70.8212,0,-70.0986	0/1:123:75,48:75:2658:48:1706:-116.716,0,-202.432	1/1:70:0,70:0:0:70:2500:-225.248,-21.0721,0	0/1:43:19,24:19:680:24:864:-65.1383,0,-48.5849	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:151:84,67:84:2993:67:2391:-169.917,0,-224.141	0/1:114:73,41:73:2588:41:1468:-98.0703,0,-198.851	1/1:19:0,19:0:0:19:676:-61.1455,-5.71957,0	1/1:140:1,139:1:36:139:4948:-441.679,-38.5459,0	1/1:51:0,51:0:0:51:1832:-165.159,-15.3525,0	0/1:83:38,45:38:1360:45:1608:-119.985,0,-97.7151	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5341,-1.50515,0	0/1:129:73,55:73:2568:55:1980:-139.523,0,-192.478	0/1:117:53,64:53:1884:64:2279:-170.033,0,-134.618	0/1:29:14,15:14:500:15:532:-39.4832,0,-36.5981	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:131:82,49:82:2924:49:1751:-118.389,0,-223.961	1/1:16:0,16:0:0:16:557:-50.2552,-4.81648,0	1/1:93:0,93:0:0:93:3329:-299.214,-27.9958,0	1/1:35:0,35:0:0:35:1248:-112.573,-10.5361,0	1/1:39:0,39:0:0:39:1384:-124.85,-11.7402,0	1/1:78:0,78:0:0:78:2769:-249.243,-23.4803,0	0/1:69:39,30:39:1389:30:1076:-76.3818,0,-104.535	0/1:76:28,48:28:988:48:1728:-132.811,0,-66.3556	0/1:70:38,32:38:1337:32:1144:-82.169,0,-99.5552	0/1:46:21,25:21:732:25:900:-67.4512,0,-52.354	1/1:71:0,71:0:0:71:2535:-228.367,-21.3731,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:124:0,123:0:0:123:4386:-394.516,-37.0267,0	1/1:43:0,43:0:0:43:1536:-138.528,-12.9443,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:65:0,65:0:0:65:2316:-208.344,-19.567,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:5:0,5:0:0:5:180:-16.5241,-1.50515,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:42:0,42:0:0:42:1508:-135.975,-12.6433,0	1/1:76:1,75:1:36:75:2700:-239.616,-19.28,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:112:1,111:1:36:111:3931:-349.234,-30.1171,0	0/1:72:35,37:35:1248:37:1320:-97.4278,0,-90.9507	0/1:55:25,30:25:892:30:1076:-80.5422,0,-64.0384	1/1:62:0,62:0:0:62:2207:-198.769,-18.6639,0	1/1:93:1,92:1:36:92:3288:-292.449,-24.3975,0	1/1:131:0,131:0:0:131:4678:-421.083,-39.4349,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:41:21,20:21:756:20:720:-52.7865,0,-56.025	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:95:69,26:69:2426:26:932:-55.601,0,-189.671	0/1:49:22,27:22:773:27:972:-73.0474,0,-55.139	1/1:46:0,46:0:0:46:1624:-146.291,-13.8474,0	0/1:122:78,44:78:2757:44:1580:-105.766,0,-211.644	0/1:63:25,38:25:892:38:1342:-102.114,0,-61.6348	0/1:47:29,18:29:1036:18:630:-42.8395,0,-79.4055	1/1:8:0,8:0:0:8:288:-26.2496,-2.40824,0	1/1:86:0,86:0:0:86:3050:-274.629,-25.8886,0	0/1:60:44,16:44:1568:16:576:-34.0847,0,-123.342	0/1:125:54,71:54:1932:71:2536:-190.832,0,-136.525	0/1:57:28,29:28:1000:29:1040:-76.6997,0,-73.1567	0/1:64:41,23:41:1472:23:807:-53.6805,0,-113.508	0/1:33:18,15:18:628:15:516:-36.8294,0,-46.805	0/1:96:57,39:57:2025:39:1404:-97.732,0,-153.622	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.6527	1/1:42:0,42:0:0:42:1487:-134.081,-12.6433,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	0/1:76:54,22:54:1928:22:784:-47.6351,0,-150.918	0/1:56:36,20:36:1292:20:720:-48.2284,0,-99.7261	1/1:66:0,66:0:0:66:2347:-211.296,-19.868,0	1/1:70:0,70:0:0:70:2490:-224.264,-21.0721,0
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chr01	3505712	.	C	T	208106	PASS	AB=0.460817;ABP=89.7958;AC=148;AF=0.787234;AN=188;AO=9874;CIGAR=1X;DP=13400;DPB=13400;DPRA=0;EPP=21435.4;EPPR=7644.42;GTI=3;LEN=1;MEANALT=1.05319;MQM=59.9867;MQMR=59.9793;NS=94;NUMALT=1;ODDS=0.957647;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=353196;QR=125714;RO=3519;RPL=9874;RPP=21444.1;RPPR=7644.42;RPR=0;RUN=1;SAF=1;SAP=21435.4;SAR=9873;SRF=0;SRP=7644.42;SRR=3519;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:254:144,110:144:5156:110:3948:-279.049,0,-387.719	1/1:174:0,174:0:0:174:6235:-561.243,-52.3792,0	1/1:352:0,352:0:0:352:12547:-1129.06,-105.963,0	1/1:106:0,106:0:0:106:3797:-341.926,-31.9092,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:278:0,278:0:0:278:9877:-888.872,-83.6863,0	1/1:174:0,174:0:0:174:6229:-560.704,-52.3792,0	0/1:181:113,68:113:4052:68:2436:-165.009,0,-310.38	1/1:88:0,88:0:0:88:3131:-282.015,-26.4906,0	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	0/1:85:44,41:44:1565:41:1476:-107.549,0,-115.552	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:91:50,41:50:1788:41:1468:-105.022,0,-133.809	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:66:40,26:40:1432:26:936:-64.6915,0,-109.31	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	1/1:901:3,895:3:108:895:32062:-2874.5,-260.61,0	0/1:274:169,104:169:6018:104:3721:-252.697,0,-459.333	0/1:115:71,44:71:2548:44:1584:-108.233,0,-194.952	1/1:109:0,109:0:0:109:3874:-348.854,-32.8123,0	0/1:212:117,95:117:4158:95:3371:-239.786,0,-310.584	1/1:162:0,161:0:0:161:5761:-518.393,-48.4658,0	0/1:535:279,256:279:9942:256:9184:-665.477,0,-733.662	0/1:316:165,151:165:5905:151:5399:-390.916,0,-436.432	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:408:1,407:1:36:407:14555:-1306.09,-119.222,0	1/1:112:1,111:1:36:111:3983:-355.06,-30.1171,0	0/1:174:71,103:71:2529:103:3692:-280.102,0,-175.481	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:253:121,132:121:4348:132:4734:-350.057,0,-315.333	0/1:161:83,78:83:2965:78:2792:-203.055,0,-218.616	0/1:83:41,42:41:1468:42:1508:-111.029,0,-107.431	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	0/1:248:147,101:147:5257:101:3611:-250.539,0,-398.61	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:262:0,262:0:0:262:9370:-843.261,-78.8699,0	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	1/1:82:0,82:0:0:82:2952:-265.913,-24.6845,0	1/1:118:1,117:1:21:117:4171:-373.472,-33.4216,0	0/1:135:61,74:61:2192:74:2656:-198.647,0,-156.906	0/1:296:176,120:176:6285:120:4275:-295.819,0,-476.639	0/1:214:117,97:117:4200:97:3445:-245.84,0,-313.757	0/1:276:154,122:154:5504:122:4368:-310.21,0,-412.403	1/1:210:1,208:1:36:208:7460:-667.842,-59.6768,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:227:0,227:0:0:227:8101:-729.106,-68.3338,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:28:0,28:0:0:28:997:-90.043,-8.42884,0	1/1:275:0,275:0:0:275:9817:-883.244,-82.7833,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:30:21,9:21:752:9:320:-20.1115,0,-58.9754	1/1:108:0,108:0:0:108:3833:-345.167,-32.5112,0	1/1:110:0,110:0:0:110:3952:-355.87,-33.1133,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:253:1,252:1:36:252:8996:-806.017,-72.5623,0	0/1:198:93,104:93:3336:104:3736:-276.816,0,-240.834	0/1:106:60,46:60:2137:46:1656:-117.419,0,-160.687	1/1:142:0,142:0:0:142:5059:-455.452,-42.7463,0	1/1:203:2,201:2:72:201:7197:-640.946,-54.2724,0	1/1:111:1,110:1:36:110:3925:-349.844,-29.8161,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:101:0,101:0:0:101:3613:-325.374,-30.404,0	0/1:86:43,43:43:1524:43:1544:-113.364,0,-111.562	0/1:26:11,15:11:396:15:532:-40.3863,0,-28.156	0/1:95:48,47:48:1720:47:1684:-123.249,0,-126.488	0/1:117:77,40:77:2741:40:1425:-93.325,0,-211.711	1/1:120:0,120:0:0:120:4285:-385.827,-36.1236,0	0/1:220:121,99:121:4324:99:3552:-253.661,0,-323.11	0/1:187:97,90:97:3446:90:3192:-231.209,0,-254.013	0/1:183:101,82:101:3613:82:2925:-208.395,0,-270.286	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:170:0,170:0:0:170:6074:-546.76,-51.1751,0	0/1:224:106,118:106:3789:118:4201:-310.809,0,-273.776	0/1:363:189,174:189:6734:174:6199:-448.675,0,-496.825	0/1:101:51,50:51:1819:50:1800:-131.878,0,-133.587	0/1:64:36,28:36:1292:28:989:-70.0561,0,-97.3178	0/1:87:45,42:45:1600:42:1508:-109.825,0,-118.101	0/1:169:88,81:88:3156:81:2896:-210.002,0,-233.391	0/1:74:39,35:39:1392:35:1252:-90.7089,0,-103.303	1/1:90:0,90:0:0:90:3228:-290.741,-27.0927,0	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:104:46,58:46:1644:58:2088:-156.883,0,-116.941	0/1:86:65,21:65:2318:21:741:-41.123,0,-182.991	1/1:165:1,164:1:36:164:5847:-522.741,-46.0717,0	1/1:134:0,134:0:0:134:4800:-432.156,-40.338,0
chr01	3509013	.	T	A	19782.9	PASS	AB=0.442068;ABP=84.7792;AC=40;AF=0.212766;AN=188;AO=1248;CIGAR=1X;DP=6150;DPB=6150;DPRA=1.33179;EPP=2713.01;EPPR=10645.4;GTI=1;LEN=1;MEANALT=1.02326;MQM=59.7428;MQMR=55.152;NS=94;NUMALT=1;ODDS=4.83502;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44568;QR=174262;RO=4901;RPL=1248;RPP=2713.01;RPPR=10645.4;RPR=0;RUN=1;SAF=1248;SAP=2713.01;SAR=0;SRF=4901;SRP=10645.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.6768	0/1:76:36,40:36:1296:40:1440:-106.991,0,-93.5399	0/0:49:49,0:49:1746:0:0:0,-14.7505,-156.943	0/0:121:121,0:121:4313:0:0:0,-36.4246,-387.929	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.3417	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.246	0/0:109:109,0:109:3856:0:0:0,-32.8123,-346.601	0/0:129:129,0:129:4597:0:0:0,-38.8329,-411.208	0/1:22:12,10:12:432:10:360:-26.1201,0,-32.5123	0/0:99:99,0:99:3543:0:0:0,-29.802,-318.717	0/0:40:40,0:40:1415:0:0:0,-12.0412,-127.584	0/0:65:65,0:65:2323:0:0:0,-19.5669,-208.286	0/1:58:29,29:29:1019:29:1032:-75.7209,0,-74.2217	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.278	0/1:37:21,16:21:756:16:567:-40.2226,0,-57.0161	0/0:36:36,0:36:1267:0:0:0,-10.8371,-114.122	0/0:65:65,0:65:2307:0:0:0,-19.5669,-207.191	0/1:54:29,25:29:1024:25:900:-65.0592,0,-75.5967	0/0:27:27,0:27:964:0:0:0,-8.12781,-86.9199	0/0:121:121,0:121:4335:0:0:0,-36.4246,-390.138	0/1:99:53,46:53:1888:46:1648:-118.79,0,-140.098	0/1:58:21,37:21:752:37:1320:-101.642,0,-50.4832	0/0:79:79,0:79:2780:0:0:0,-23.7814,-250.115	0/1:65:44,21:44:1553:21:752:-48.436,0,-120.251	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.749	0/1:208:126,82:126:4480:82:2935:-201.763,0,-340.265	0/1:112:62,50:62:2207:50:1800:-128.567,0,-164.085	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.3461	0/0:131:131,0:131:4674:0:0:0,-39.4349,-420.695	0/0:148:148,0:148:5264:0:0:0,-44.5524,-472.422	0/1:102:53,49:53:1895:49:1752:-127.223,0,-139.705	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0052	0/0:19:19,0:19:667:0:0:0,-5.71957,-59.9369	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9851	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1573	0/1:146:70,76:70:2461:76:2714:-200.551,0,-177.151	0/1:166:107,59:107:3773:59:2092:-138.573,0,-287.253	0/1:30:17,13:17:612:13:468:-33.4287,0,-45.9729	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59457	0/1:76:44,32:44:1557:32:1138:-79.8459,0,-117.198	0/0:23:23,0:23:820:0:0:0,-6.92369,-73.7575	0/0:73:73,0:73:2603:0:0:0,-21.9752,-234.122	0/0:55:55,0:55:1917:0:0:0,-16.5566,-172.021	0/0:50:50,0:50:1746:0:0:0,-15.0515,-157.209	0/0:61:61,0:61:2151:0:0:0,-18.3628,-193.742	0/1:54:22,32:22:788:32:1133:-86.0185,0,-54.6364	0/1:87:50,37:50:1769:37:1328:-93.6135,0,-133.093	0/1:72:35,37:35:1252:37:1317:-97.1541,0,-91.1077	0/1:78:47,31:47:1668:31:1085:-74.4579,0,-126.237	0/0:122:122,0:122:4355:0:0:0,-36.7257,-390.832	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5442	0/0:69:69,0:69:2471:0:0:0,-20.7711,-222.079	0/0:33:33,0:33:1180:0:0:0,-9.93399,-104.833	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.8798	0/0:88:88,0:88:3131:0:0:0,-26.4906,-280.934	0/0:18:18,0:18:632:0:0:0,-5.41854,-56.4498	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2971	0/1:18:13,5:13:460:5:180:-11.1331,0,-36.0408	0/0:63:63,0:63:2243:0:0:0,-18.9649,-201.771	0/0:100:100,0:100:3541:0:0:0,-30.103,-318.474	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.018	0/0:169:168,1:168:6016:1:36:0,-47.2758,-537.648	0/1:113:74,39:74:2651:39:1400:-92.2797,0,-204.266	0/1:53:35,18:35:1243:18:644:-42.336,0,-96.0073	0/0:39:39,0:39:1360:0:0:0,-11.7402,-122.205	0/0:157:156,1:156:5551:1:36:0,-43.6634,-495.754	0/0:99:98,1:98:3488:1:36:0,-26.2037,-309.414	0/0:13:13,0:13:464:0:0:0,-3.91339,-41.9524	0/0:61:61,0:61:2170:0:0:0,-18.3628,-194.406	0/1:90:47,43:47:1659:43:1540:-111.798,0,-121.533	0/1:15:8,7:8:279:7:252:-18.5135,0,-20.921	0/1:96:53,43:53:1882:43:1506:-106.365,0,-140.437	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.8676	0/0:130:130,0:130:4647:0:0:0,-39.1339,-417.376	0/1:70:49,21:49:1740:21:752:-46.9342,0,-135.469	0/1:48:34,14:34:1201:14:504:-31.2487,0,-93.7444	0/1:70:35,34:35:1252:34:1211:-88.1634,0,-91.0316	0/0:19:18,1:18:611:1:36:0,-2.12129,-51.6171	0/0:72:72,0:72:2561:0:0:0,-21.6742,-230.248	0/1:61:35,26:35:1248:26:932:-65.8236,0,-92.5316	0/1:129:84,45:84:2984:45:1604:-105.817,0,-229.111	0/1:101:48,53:48:1703:53:1891:-140.059,0,-122.877	0/1:36:15,21:15:540:21:752:-57.1692,0,-38.0762	0/1:60:29,31:29:1023:31:1112:-82.3289,0,-74.1063	0/1:92:53,39:53:1892:39:1392:-97.8812,0,-142.68	0/1:33:19,14:19:676:14:504:-35.6033,0,-50.9672	0/0:73:73,0:73:2543:0:0:0,-21.9752,-227.708	0/0:70:70,0:70:2508:0:0:0,-21.0721,-224.832	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.126	0/1:60:33,27:33:1171:27:964:-69.0117,0,-87.5314	0/1:43:15,28:15:540:28:999:-77.2753,0,-35.894	0/0:87:87,0:87:3094:0:0:0,-26.1896,-278.315	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.412
chr01	3513065	.	T	C	205887	PASS	AB=0.407257;ABP=480.706;AC=136;AF=0.731183;AN=186;AO=7866;CIGAR=1X;DP=11702;DPB=11702;DPRA=0;EPP=17083.8;EPPR=8319.75;GTI=4;LEN=1;MEANALT=1.06452;MQM=59.9142;MQMR=59.7572;NS=93;NUMALT=1;ODDS=0.549058;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278809;QR=136360;RO=3830;RPL=4075;RPP=25.276;RPPR=11.1746;RPR=3791;RUN=1;SAF=4075;SAP=25.276;SAR=3791;SRF=1975;SRP=11.1746;SRR=1855;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:27,16:27:942:16:572:-38.8691,0,-72.148	1/1:112:3,109:3:99:109:3897:-341.685,-24.4788,0	1/1:148:0,147:0:0:147:5210:-468.681,-44.2514,0	0/1:338:202,136:202:7199:136:4786:-329.146,0,-546.12	0/1:77:52,25:52:1837:25:890:-57.2398,0,-142.429	0/1:58:32,26:32:1148:26:927:-66.2872,0,-86.1701	0/1:108:64,44:64:2284:44:1571:-109.168,0,-173.305	1/1:143:2,141:2:72:141:4978:-441.333,-36.2106,0	0/1:160:84,76:84:2988:76:2691:-194.268,0,-220.986	0/1:141:55,86:55:1972:86:3084:-235.341,0,-135.305	1/1:67:0,67:0:0:67:2383:-214.721,-20.169,0	0/1:176:101,75:101:3581:75:2643:-185.134,0,-269.498	1/1:119:1,118:1:36:118:4220:-376.38,-32.2243,0	1/1:101:1,100:1:36:100:3556:-316.645,-26.8058,0	1/1:106:1,105:1:36:105:3721:-331.493,-28.3109,0	0/1:115:70,45:70:2488:45:1586:-108.41,0,-189.538	1/1:96:0,96:0:0:96:3397:-305.856,-28.8989,0	1/1:93:4,89:4:144:89:3179:-273.019,-14.6822,0	0/1:41:24,17:24:860:17:599:-41.895,0,-65.3512	0/1:203:149,54:149:5317:54:1903:-110.419,0,-417.545	0/1:246:139,107:139:4946:107:3792:-267.426,0,-370.99	1/1:67:2,65:2:72:65:2263:-197.093,-13.3323,0	1/1:112:3,109:3:93:109:3853:-338.284,-25.0386,0	0/1:84:11,73:11:396:73:2611:-209.948,0,-10.6962	0/1:128:80,48:80:2855:48:1670:-112.051,0,-218.645	1/1:260:0,259:0:0:259:9124:-820.779,-77.9668,0	0/1:318:190,128:190:6777:128:4521:-311.302,0,-514.261	0/1:95:50,45:50:1792:45:1595:-115.24,0,-132.909	1/1:208:2,206:2:68:206:7326:-653.098,-56.3225,0	0/1:230:131,99:131:4680:99:3495:-245.499,0,-351.895	1/1:117:0,117:0:0:117:4164:-374.941,-35.2205,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	1/1:306:1,305:1:36:305:10784:-966.853,-88.5169,0	0/1:151:99,52:99:3525:52:1858:-122.042,0,-270.388	0/1:73:38,35:38:1360:35:1254:-91.1897,0,-100.725	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	1/1:124:3,121:3:108:121:4284:-375.665,-27.2526,0	1/1:60:1,59:1:36:59:2092:-184.95,-14.4635,0	0/1:136:101,35:101:3583:35:1243:-71.198,0,-281.715	0/1:170:84,86:84:2976:86:3057:-224.178,0,-216.891	1/1:118:0,118:0:0:118:4198:-377.997,-35.5215,0	0/1:161:107,54:107:3803:54:1908:-123.525,0,-294.001	1/1:112:3,109:3:108:109:3860:-337.521,-23.6402,0	1/1:149:0,149:0:0:149:5295:-476.674,-44.8535,0	0/1:123:71,52:71:2535:52:1832:-128.131,0,-191.374	0/1:180:108,72:108:3842:72:2550:-175.56,0,-291.786	0/1:151:94,57:94:3350:57:2036:-138.056,0,-256.251	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/1:127:77,50:77:2764:50:1796:-123.692,0,-210.735	0/1:52:34,18:34:1215:18:639:-42.1846,0,-94.0022	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:153:0,153:0:0:153:5433:-489.1,-46.0576,0	0/1:46:24,21:24:851:21:730:-52.1138,0,-63.0035	1/1:6:0,6:0:0:6:216:-19.7896,-1.80618,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:141:95,46:95:3392:46:1652:-106.523,0,-263.04	1/1:135:1,134:1:36:134:4761:-424.997,-37.0408,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:440:236,204:236:8397:204:7274:-522.173,0,-623.064	1/1:187:0,187:0:0:187:6606:-594.613,-56.2926,0	0/1:88:57,31:57:2025:31:1088:-71.7355,0,-155.988	1/1:93:0,93:0:0:93:3309:-298.023,-27.9958,0	0/1:248:176,72:176:6264:72:2512:-151.673,0,-489.131	1/1:158:1,157:1:36:157:5524:-493.687,-43.9645,0	0/1:58:39,19:39:1375:19:669:-43.0742,0,-106.578	0/1:56:29,27:29:1040:27:957:-69.5862,0,-77.0533	1/1:137:7,130:7:252:130:4603:-391.401,-18.2122,0	1/1:29:0,29:0:0:29:1031:-93.1013,-8.72987,0	1/1:119:0,119:0:0:119:4196:-377.823,-35.8226,0	1/1:105:0,104:0:0:104:3669:-330.053,-31.3071,0	1/1:99:0,99:0:0:99:3486:-313.947,-29.802,0	1/1:201:1,200:1:36:200:7115:-636.68,-56.9088,0	0/1:140:110,30:110:3896:30:1068:-54.2871,0,-308.622	0/1:196:115,81:115:4113:81:2887:-201.026,0,-310.885	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:100:0,100:0:0:100:3567:-321.238,-30.103,0	0/1:134:95,39:95:3387:39:1378:-83.9792,0,-264.708	1/1:190:0,190:0:0:190:6747:-607.3,-57.1957,0	1/1:170:1,168:1:36:168:5969:-533.708,-47.6356,0	1/1:106:3,103:3:108:103:3640:-317.73,-21.834,0	1/1:127:0,127:0:0:127:4493:-403.522,-38.2308,0	0/1:274:145,129:145:5166:129:4593:-331.048,0,-382.523	0/1:58:30,28:30:1072:28:999:-72.7648,0,-79.3151	0/1:136:74,62:74:2629:62:2203:-157.595,0,-195.706	0/1:114:67,47:67:2384:47:1660:-115.367,0,-180.276	0/1:49:27,22:27:947:22:764:-54.3263,0,-70.7784	0/1:149:73,76:73:2571:76:2683:-196.856,0,-186.764	0/1:141:98,43:98:3496:43:1536:-96.0859,0,-272.398	1/1:344:0,343:0:0:343:12143:-1092.36,-103.253,0	1/1:211:0,211:0:0:211:7471:-672.431,-63.5173,0
chr01	3538867	.	G	A	24052.8	PASS	AB=0.503136;ABP=3.25544;AC=39;AF=0.207447;AN=188;AO=1450;CIGAR=1X;DP=5898;DPB=5898;DPRA=1.38863;EPP=3073.96;EPPR=9486.61;GTI=2;LEN=1;MEANALT=1;MQM=59.9566;MQMR=59.9816;NS=94;NUMALT=1;ODDS=0.254812;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51174;QR=158922;RO=4447;RPL=9;RPP=3073.96;RPPR=9495.22;RPR=1441;RUN=1;SAF=1450;SAP=3151.65;SAR=0;SRF=4446;SRP=9650.86;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/1:58:25,33:25:881:33:1164:-87.6072,0,-62.1461	0/0:114:114,0:114:4047:0:0:0,-34.3174,-364.415	0/0:174:174,0:174:6195:0:0:0,-52.3792,-557.632	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:67:67,0:67:2370:0:0:0,-20.169,-213.553	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.019	0/1:39:26,13:26:936:13:460:-29.9952,0,-72.8169	0/0:98:98,0:98:3502:0:0:0,-29.5009,-315.39	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/1:73:39,34:39:1395:34:1220:-88.1316,0,-103.873	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.446	0/1:57:27,30:27:964:30:1068:-79.2734,0,-69.9181	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.937	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:26:12,14:12:428:14:504:-37.8713,0,-31.032	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:107:54,53:54:1944:53:1884:-137.628,0,-143.026	0/1:56:10,46:10:360:46:1609:-128.24,0,-15.8866	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.635	0/1:36:14,22:14:504:22:773:-59.0476,0,-34.8595	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.224	0/1:213:95,118:95:3405:118:4164:-310.828,0,-242.543	0/1:121:64,57:64:2300:57:1970:-141.145,0,-170.836	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/0:169:169,0:169:6022:0:0:0,-50.8741,-542.084	0/0:81:81,0:81:2873:0:0:0,-24.3834,-258.802	0/1:75:36,39:36:1272:39:1373:-101.289,0,-92.2029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:155:88,67:88:3160:67:2377:-167.527,0,-237.909	0/1:74:33,41:33:1180:41:1460:-109.42,0,-84.2318	0/1:37:22,15:22:783:15:532:-37.0744,0,-59.6548	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:91:46,45:46:1652:45:1593:-116.265,0,-121.573	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.61	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.156	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:54:24,30:24:856:30:1056:-79.0953,0,-61.1055	0/1:73:30,43:30:1076:43:1524:-115.478,0,-75.1777	0/1:75:23,52:23:820:52:1852:-144.383,0,-51.5453	0/1:84:51,33:51:1836:33:1164:-79.7804,0,-140.234	0/0:56:56,0:56:2007:0:0:0,-16.8577,-180.903	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:62:61,0:61:2192:0:0:0,-18.3628,-197.186	0/0:56:56,0:56:1982:0:0:0,-16.8577,-178.651	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.211	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:35:34,1:34:1220:1:36:0,-6.93777,-106.509	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:200:200,0:200:7156:0:0:0,-60.206,-644.095	0/1:114:48,66:48:1720:66:2302:-173.122,0,-120.768	0/1:71:31,40:31:1116:40:1421:-106.814,0,-79.3786	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.643	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.915	0/0:135:131,4:131:4696:4:140:0,-27.6945,-409.855	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/1:42:27,15:27:953:15:536:-35.9316,0,-73.4401	0/1:27:11,16:11:388:16:541:-40.8802,0,-27.1296	0/1:123:61,62:61:2157:62:2184:-159.8,0,-157.369	0/1:63:37,26:37:1317:26:913:-63.5191,0,-99.8649	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/1:157:92,65:92:3280:65:2274:-157.658,0,-248.157	0/1:42:23,19:23:824:19:661:-47.1684,0,-61.8401	0/1:99:46,53:46:1652:53:1865:-138.326,0,-119.167	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.647	0/1:75:31,44:31:1108:44:1560:-118.114,0,-77.4537	0/1:127:58,69:58:2068:69:2402:-178.205,0,-148.16	0/1:45:24,21:24:864:21:756:-54.8209,0,-64.5362	0/1:49:25,24:25:900:24:848:-61.8892,0,-66.5705	0/1:40:22,18:22:792:18:636:-45.5268,0,-59.5645	0/1:110:68,42:68:2436:42:1496:-100.631,0,-186.382	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/1:97:57,40:57:2040:40:1428:-99.6176,0,-154.672	0/1:50:22,28:22:792:28:1004:-75.6244,0,-56.5542	0/0:129:129,0:129:4612:0:0:0,-38.8329,-415.242	0/0:78:77,1:77:2764:1:32:0,-20.281,-245.802
chr01	3538874	.	C	G	111162	PASS	AB=0.505125;ABP=3.65583;AC=149;AF=0.792553;AN=188;AO=4438;CIGAR=1X;DP=5848;DPB=5848;DPRA=0;EPP=4192.06;EPPR=1348.37;GTI=2;LEN=1;MEANALT=1.06383;MQM=59.9741;MQMR=59.9501;NS=94;NUMALT=1;ODDS=0.346787;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158636;QR=48951;RO=1402;RPL=3681;RPP=4186.34;RPPR=1348.37;RPR=757;RUN=1;SAF=4437;SAP=9631.32;SAR=1;SRF=1402;SRP=3047.41;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:52:27,24:27:943:24:856:-61.6489,0,-69.4712	1/1:113:0,113:0:0:113:4032:-363.067,-34.0164,0	1/1:175:0,175:0:0:175:6280:-565.278,-52.6803,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:67:0,67:0:0:67:2400:-216.254,-20.169,0	1/1:63:0,62:0:0:62:2192:-197.185,-18.6639,0	0/1:41:14,27:14:486:27:968:-75.0928,0,-31.7257	1/1:97:0,97:0:0:97:3476:-313.051,-29.1999,0	1/1:47:1,46:1:36:46:1652:-145.37,-10.5501,0	1/1:87:0,87:0:0:87:3101:-279.316,-26.1896,0	0/1:75:34,41:34:1166:41:1461:-109.177,0,-82.6618	1/1:42:0,42:0:0:42:1508:-136.01,-12.6433,0	0/1:57:30,27:30:1037:27:964:-69.9181,0,-76.4755	1/1:55:0,55:0:0:55:1969:-177.484,-16.5567,0	1/1:39:0,39:0:0:39:1380:-124.498,-11.7402,0	0/1:24:12,12:12:402:12:417:-30.6355,0,-29.2745	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:87:0,87:0:0:87:3103:-279.497,-26.1896,0	0/1:104:51,53:51:1763:53:1891:-139.161,0,-127.643	0/1:59:48,11:48:1695:11:396:-18.222,0,-135.075	1/1:54:0,54:0:0:54:1909:-172.085,-16.2556,0	0/1:36:21,15:21:736:15:520:-36.287,0,-55.6682	1/1:32:0,32:0:0:32:1135:-102.457,-9.63296,0	0/1:205:110,93:110:3819:93:3321:-237.638,0,-282.447	0/1:120:57,63:57:2001:63:2260:-167.539,0,-144.239	1/1:29:0,29:0:0:29:1028:-92.833,-8.72987,0	1/1:169:0,167:0:0:167:5978:-537.766,-50.272,0	1/1:82:0,82:0:0:82:2931:-264.02,-24.6845,0	0/1:77:41,36:41:1439:36:1288:-93.0443,0,-106.626	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:2,3:2:48:3:108:-8.57002,0,-3.05459	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:153:66,87:66:2330:87:3106:-233.709,0,-163.902	0/1:75:42,33:42:1475:33:1175:-83.4797,0,-110.466	0/1:36:14,22:14:476:22:788:-60.4077,0,-32.3248	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:90:45,45:45:1583:45:1616:-118.637,0,-115.662	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:55:31,24:31:1090:24:864:-61.5259,0,-81.8513	0/1:74:43,31:43:1479:31:1097:-76.7603,0,-111.126	0/1:75:51,24:51:1783:24:852:-54.4226,0,-138.172	0/1:85:33,51:33:1163:51:1832:-139.514,0,-79.33	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:62:0,62:0:0:62:2201:-198.354,-18.6639,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:95:0,95:0:0:95:3395:-305.765,-28.5979,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:3,8:3:108:8:279:-22.1362,0,-6.76384	1/1:36:1,35:1:36:35:1245:-108.748,-7.23881,0	1/1:78:0,78:0:0:78:2772:-249.72,-23.4803,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:198:1,197:1:36:197:7059:-631.714,-56.0057,0	0/1:104:55,49:55:1919:49:1747:-126.206,0,-141.677	0/1:68:37,31:37:1303:31:1116:-80.2817,0,-97.1005	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:68:0,68:0:0:68:2435:-219.405,-20.47,0	1/1:134:3,131:3:100:131:4675:-411.58,-31.0076,0	1/1:34:0,34:0:0:34:1215:-109.656,-10.235,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:42:15,27:15:516:27:949:-73.0795,0,-34.1202	0/1:24:15,8:15:531:8:288:-18.9839,0,-40.8382	0/1:124:60,64:60:2083:64:2280:-168.135,0,-150.41	0/1:65:28,37:28:970:37:1328:-100.255,0,-68.0432	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:152:60,92:60:2086:92:3292:-250.743,0,-142.251	0/1:39:16,23:16:572:23:828:-63.1039,0,-40.0733	0/1:100:54,46:54:1891:46:1648:-118.506,0,-140.365	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:79:0,79:0:0:79:2844:-256.197,-23.7814,0	0/1:76:45,31:45:1586:31:1103:-76.7015,0,-120.151	0/1:126:68,58:68:2404:58:2072:-148.821,0,-178.688	0/1:45:20,25:20:699:25:892:-67.0533,0,-49.6861	0/1:47:23,24:23:815:24:864:-63.9342,0,-59.5224	0/1:37:16,21:16:550:21:752:-56.8681,0,-38.6852	0/1:112:41,71:41:1427:71:2527:-193.966,0,-94.149	0/1:18:4,14:4:135:14:495:-39.4645,0,-7.06397	1/1:64:0,64:0:0:64:2257:-203.389,-19.2659,0	1/1:55:0,55:0:0:55:1960:-176.675,-16.5567,0	1/1:38:0,38:0:0:38:1348:-121.62,-11.4391,0	0/1:92:36,56:36:1263:56:2008:-153.299,0,-86.277	0/1:49:27,22:27:935:22:792:-56.8552,0,-69.7089	1/1:127:0,127:0:0:127:4556:-410.205,-38.2308,0	1/1:79:1,78:1:36:78:2804:-249.001,-20.1831,0
chr01	3538899	.	A	T	91834.4	PASS	AB=0.496167;ABP=3.3765;AC=149;AF=0.792553;AN=188;AO=4424;CIGAR=1X;DP=5882;DPB=5882;DPRA=0;EPP=9600.92;EPPR=3160.33;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.9742;MQMR=59.9567;NS=94;NUMALT=1;ODDS=0.0496202;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156746;QR=51670;RO=1454;RPL=4424;RPP=9609.6;RPPR=3151.65;RPR=0;RUN=1;SAF=4423;SAP=9600.92;SAR=1;SRF=1453;SRP=3151.65;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1148:-103.623,-9.93399,0	0/1:57:31,26:31:1104:26:921:-66.0481,0,-82.5119	1/1:112:0,112:0:0:112:3955:-356.143,-33.7154,0	1/1:172:0,172:0:0:172:6119:-550.798,-51.7772,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:13:0,13:0:0:13:442:-40.1043,-3.91339,0	1/1:69:0,69:0:0:69:2421:-218.144,-20.7711,0	1/1:63:0,63:0:0:63:2204:-198.622,-18.9649,0	0/1:39:13,26:13:460:26:910:-70.4736,0,-29.9952	1/1:99:0,99:0:0:99:3539:-318.719,-29.802,0	1/1:47:1,46:1:36:46:1621:-142.579,-10.5501,0	1/1:85:0,84:0:0:84:2938:-264.295,-25.2865,0	0/1:75:34,41:34:1212:41:1472:-109.708,0,-86.8091	1/1:42:0,42:0:0:42:1482:-133.672,-12.6433,0	0/1:57:30,27:30:1055:27:968:-70.2787,0,-78.1013	1/1:56:0,56:0:0:56:1994:-179.733,-16.8577,0	1/1:38:0,38:0:0:38:1337:-120.628,-11.4391,0	0/1:24:12,12:12:423:12:417:-30.6355,0,-31.1803	1/1:23:0,23:0:0:23:795:-71.864,-6.92369,0	1/1:86:0,86:0:0:86:3071:-276.618,-25.8886,0	0/1:104:53,51:53:1891:51:1809:-131.783,0,-139.16	0/1:59:48,11:48:1689:11:396:-18.222,0,-134.533	1/1:53:0,53:0:0:53:1831:-165.061,-15.9546,0	0/1:36:21,15:21:748:15:521:-36.3777,0,-56.8082	1/1:31:0,31:0:0:31:1093:-98.6775,-9.33193,0	0/1:215:118,97:118:4184:97:3456:-246.531,0,-312.022	0/1:122:59,63:59:2095:63:2219:-163.248,0,-152.094	1/1:29:0,29:0:0:29:1020:-92.1094,-8.72987,0	1/1:168:0,168:0:0:168:5944:-535.07,-50.573,0	1/1:81:0,81:0:0:81:2851:-256.826,-24.3834,0	0/1:76:41,35:41:1468:35:1252:-90.1068,0,-109.538	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:155:69,86:69:2476:86:3079:-230.655,0,-176.434	0/1:71:41,30:41:1468:30:1080:-76.1401,0,-111.043	0/1:38:16,22:16:555:22:765:-57.7284,0,-38.8369	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:90:45,45:45:1620:45:1597:-116.926,0,-118.997	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:61:0,61:0:0:61:2154:-194.126,-18.3628,0	1/1:53:0,53:0:0:53:1857:-167.408,-15.9546,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:39:0,39:0:0:39:1388:-125.219,-11.7402,0	0/1:57:34,23:34:1224:23:824:-57.3246,0,-93.3083	0/1:73:42,31:42:1496:31:1097:-77.0628,0,-112.959	0/1:74:51,23:51:1815:23:797:-49.7697,0,-141.354	0/1:86:35,51:35:1252:51:1813:-137.561,0,-87.0965	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:63:0,63:0:0:63:2207:-198.895,-18.9649,0	1/1:56:0,56:0:0:56:1975:-178.022,-16.8577,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:97:0,97:0:0:97:3430:-308.916,-29.1999,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	1/1:36:1,35:1:32:35:1222:-107.081,-7.63777,0	1/1:77:0,75:0:0:75:2648:-238.206,-22.5773,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:200:0,200:0:0:200:7109:-639.846,-60.206,0	0/1:113:64,49:64:2249:49:1736:-122.505,0,-168.656	0/1:69:38,31:38:1344:31:1116:-79.9806,0,-100.489	1/1:46:0,46:0:0:46:1630:-146.987,-13.8474,0	1/1:67:0,67:0:0:67:2376:-214.097,-20.169,0	1/1:132:3,129:3:108:129:4577:-402.018,-29.6608,0	1/1:34:0,33:0:0:33:1180:-106.148,-9.93399,0	1/1:36:0,36:0:0:36:1270:-114.601,-10.8371,0	0/1:40:15,25:15:528:25:900:-69.2798,0,-35.8102	0/1:29:18,11:18:648:11:396:-27.2529,0,-49.9174	0/1:125:61,64:61:2171:64:2270:-166.932,0,-158.027	0/1:66:29,37:29:1020:37:1323:-99.5033,0,-72.2442	1/1:67:0,67:0:0:67:2374:-213.918,-20.169,0	0/1:155:65,90:65:2306:90:3174:-239.224,0,-161.14	0/1:42:19,23:19:653:23:824:-61.8401,0,-46.4458	0/1:94:48,46:48:1720:46:1648:-120.312,0,-126.789	1/1:12:0,12:0:0:12:420:-38.134,-3.61236,0	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	0/1:75:44,31:44:1568:31:1099:-76.6422,0,-118.834	0/1:122:66,56:66:2337:56:1978:-141.568,0,-173.863	0/1:46:21,25:21:743:25:896:-67.113,0,-53.346	0/1:48:23,25:23:811:25:896:-66.5109,0,-58.8605	0/1:39:18,21:18:639:21:752:-56.2661,0,-46.0981	0/1:114:43,71:43:1523:71:2504:-191.293,0,-101.854	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	1/1:66:0,66:0:0:66:2330:-209.957,-19.868,0	1/1:58:1,57:1:36:57:2040:-180.418,-14.0052,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:97:40,57:40:1427:57:2031:-153.862,0,-99.5269	0/1:52:30,22:30:1068:22:777:-54.5977,0,-80.7785	1/1:129:1,128:1:36:128:4519:-403.278,-35.2346,0	1/1:77:1,76:1:36:76:2712:-240.726,-19.581,0
chr01	3747489	.	A	T	27260.7	PASS	AB=0.507901;ABP=5.41215;AC=41;AF=0.218085;AN=188;AO=2257;CIGAR=1X;DP=8190;DPB=8190;DPRA=1.57082;EPP=4904.02;EPPR=12884.2;GTI=6;LEN=1;MEANALT=1.02222;MQM=32.0899;MQMR=40.6003;NS=94;NUMALT=1;ODDS=0.408839;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80784;QR=211855;RO=5932;RPL=2257;RPP=4904.02;RPPR=12884.2;RPR=0;RUN=1;SAF=2257;SAP=4904.02;SAR=0;SRF=5932;SRP=12884.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1288:0:0:0,-10.8371,-108.751	0/1:111:57,54:57:2040:54:1932:-118.632,0,-139.297	0/0:84:84,0:84:2980:0:0:0,-25.2865,-249.012	0/0:108:108,0:108:3872:0:0:0,-32.5112,-336.263	0/0:76:76,0:76:2717:0:0:0,-22.8783,-232.709	0/0:51:51,0:51:1836:0:0:0,-15.3525,-150.519	0/0:123:123,0:123:4374:0:0:0,-37.0267,-382.915	0/0:188:188,0:188:6694:0:0:0,-56.5936,-560.795	0/1:99:42,57:42:1500:57:2044:-132.055,0,-97.6892	0/0:97:97,0:97:3471:0:0:0,-29.1999,-303.163	0/0:58:58,0:58:2076:0:0:0,-17.4597,-180.353	0/0:74:74,0:74:2640:0:0:0,-22.2762,-224.262	0/1:99:56,43:56:2004:43:1548:-91.3952,0,-137.956	0/0:69:69,0:69:2468:0:0:0,-20.7711,-213.222	0/1:87:36,51:36:1284:51:1824:-113.611,0,-84.7397	0/0:58:58,0:58:2072:0:0:0,-17.4597,-178.988	0/0:49:49,0:49:1747:0:0:0,-14.7505,-147.795	0/1:77:36,41:36:1296:41:1468:-92.752,0,-85.9266	0/0:19:19,0:19:684:0:0:0,-5.71957,-58.457	0/0:85:85,0:85:3013:0:0:0,-25.5875,-261.881	0/1:76:51,25:51:1812:25:896:-46.5453,0,-133.997	0/1:85:35,50:35:1248:50:1796:-108.918,0,-84.3747	0/0:117:117,0:117:4165:0:0:0,-35.2205,-362.07	0/1:85:45,40:45:1603:40:1428:-84.3653,0,-111.698	0/0:78:78,0:78:2785:0:0:0,-23.4803,-238.424	0/1:415:203,212:203:7234:212:7578:-440.877,0,-512.983	0/1:166:81,85:81:2904:85:3048:-183.773,0,-198.841	0/0:37:37,0:37:1328:0:0:0,-11.1381,-112.91	0/0:146:144,2:144:5156:2:68:0,-38.4147,-449.769	0/0:157:157,0:157:5604:0:0:0,-47.2617,-480.211	0/1:92:48,44:48:1716:44:1580:-93.4301,0,-122.032	0/0:16:16,0:16:576:0:0:0,-4.81648,-47.8991	0/0:18:17,1:17:608:1:32:0,-2.51943,-49.9511	0/1:8:3,5:3:108:5:180:-11.9605,0,-7.07704	0/0:7:7,0:7:248:0:0:0,-2.10721,-21.4202	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.5341	0/1:240:107,133:107:3840:133:4764:-282.373,0,-267.079	0/1:208:108,100:108:3837:100:3591:-212.367,0,-267.928	0/1:54:24,30:24:851:30:1067:-67.2539,0,-56.3461	1/1:1:0,1:0:0:1:36:-3.05454,-0.30103,0	0/1:86:36,50:36:1280:50:1792:-111.695,0,-84.9912	0/0:31:31,0:31:1104:0:0:0,-9.33193,-94.6231	0/0:118:118,0:118:4217:0:0:0,-35.5215,-361.936	0/0:85:85,0:85:3025:0:0:0,-25.5875,-264.058	0/0:80:80,0:80:2876:0:0:0,-24.0824,-251.577	0/0:111:111,0:111:3968:0:0:0,-33.4143,-351.431	0/1:105:52,53:52:1864:53:1899:-117.232,0,-124.185	0/1:256:129,127:129:4600:127:4552:-270.709,0,-325.727	0/1:156:85,71:85:3040:71:2536:-147.239,0,-215.583	0/1:80:46,34:46:1656:34:1215:-68.9768,0,-119.839	0/0:66:66,0:66:2356:0:0:0,-19.868,-208.432	0/0:10:10,0:10:360:0:0:0,-3.0103,-31.8307	0/0:77:76,1:76:2720:1:36:0,-20.0557,-226.16	0/0:28:28,0:28:1008:0:0:0,-8.42884,-89.7774	0/0:39:39,0:39:1400:0:0:0,-11.7402,-118.118	0/0:60:60,0:60:2128:0:0:0,-18.0618,-183.127	0/0:43:43,0:43:1532:0:0:0,-12.9443,-131.568	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.1779	0/1:18:8,10:8:288:10:352:-21.4615,0,-20.4856	0/0:55:54,1:54:1932:1:36:0,-13.5021,-163.09	0/0:90:90,0:90:3224:0:0:0,-27.0927,-282.016	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.662	0/0:130:130,0:130:4637:0:0:0,-39.1339,-409.745	0/1:233:134,99:134:4761:99:3552:-201.551,0,-344.905	0/1:93:45,48:45:1597:48:1704:-103.467,0,-109.419	0/0:43:43,0:43:1521:0:0:0,-12.9443,-132.455	0/0:149:149,0:149:5329:0:0:0,-44.8535,-463.794	0/0:110:109,1:109:3899:1:36:0,-30.0588,-336.809	0/0:7:7,0:7:239:0:0:0,-2.10721,-21.1085	0/0:67:67,0:67:2384:0:0:0,-20.169,-201.426	0/1:100:51,49:51:1824:49:1764:-101.646,0,-130.592	0/1:27:13,14:13:464:14:495:-30.2351,0,-31.5335	0/1:56:24,32:24:864:32:1152:-73.4155,0,-54.9883	0/1:72:39,33:39:1400:33:1176:-70.9296,0,-95.5329	0/0:181:181,0:181:6479:0:0:0,-54.4864,-557.115	0/1:100:51,49:51:1816:49:1747:-104.2,0,-129.449	0/1:122:55,67:55:1952:67:2387:-150.833,0,-128.78	0/1:77:47,30:47:1680:30:1076:-62.1236,0,-117.598	0/0:14:14,0:14:500:0:0:0,-4.21442,-42.7641	0/0:95:95,0:95:3378:0:0:0,-28.5978,-289.637	0/1:57:25,32:25:896:32:1148:-73.7666,0,-58.1511	0/1:182:83,99:83:2972:99:3556:-217.173,0,-203.76	0/1:125:65,60:65:2336:60:2135:-126.634,0,-164.714	0/1:67:32,35:32:1144:35:1252:-76.0737,0,-80.394	0/1:140:73,66:73:2620:66:2368:-139.029,0,-185.87	0/1:162:78,84:78:2777:84:3002:-181.304,0,-192.435	0/1:57:26,31:26:936:31:1116:-70.7094,0,-61.4533	0/0:88:88,0:88:3152:0:0:0,-26.4906,-263.657	0/0:59:59,0:59:2116:0:0:0,-17.7608,-176.328	0/0:24:24,0:24:856:0:0:0,-7.22472,-74.3868	0/1:81:29,52:29:1040:52:1857:-117.803,0,-64.9067	0/1:76:21,55:21:752:55:1963:-127.919,0,-42.5333	0/0:38:38,0:38:1360:0:0:0,-11.4391,-119.501	0/0:91:91,0:91:3237:0:0:0,-27.3937,-281.876
chr01	3747538	.	T	C	57884.9	PASS	AB=0.532974;ABP=62.5833;AC=40;AF=0.212766;AN=188;AO=3383;CIGAR=1X;DP=13075;DPB=13075;DPRA=1.92114;EPP=7349.1;EPPR=21048.9;GTI=2;LEN=1;MEANALT=1;MQM=59.6364;MQMR=59.9487;NS=94;NUMALT=1;ODDS=1.15119;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120867;QR=341349;RO=9692;RPL=0;RPP=7349.1;RPPR=21048.9;RPR=3383;RUN=1;SAF=0;SAP=7349.1;SAR=3383;SRF=0;SRP=21048.9;SRR=9692;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:115:115,0:115:3993:0:0:0,-34.6184,-359.569	0/1:125:63,62:63:2213:62:2220:-162.403,0,-161.805	0/0:222:222,0:222:7847:0:0:0,-66.8287,-706.272	0/0:225:225,0:225:7892:0:0:0,-67.7317,-710.327	0/0:84:81,3:81:2852:3:108:0,-15.2198,-246.854	0/0:39:39,0:39:1338:0:0:0,-11.7402,-120.714	0/0:109:109,0:109:3811:0:0:0,-32.8123,-343.036	0/0:276:275,1:275:9708:1:36:0,-79.486,-869.72	0/1:192:99,93:99:3517:93:3301:-239.476,0,-258.538	0/0:123:123,0:123:4354:0:0:0,-37.0267,-392.039	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.073	0/0:79:79,0:79:2772:0:0:0,-23.7814,-249.724	0/1:79:39,40:39:1380:40:1432:-105.341,0,-100.603	0/0:100:100,0:100:3563:0:0:0,-30.103,-320.874	0/1:81:45,36:45:1588:36:1277:-90.8477,0,-118.827	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.111	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.541	0/1:35:14,21:14:504:21:743:-56.6573,0,-35.162	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:161:159,2:159:5563:2:72:0,-41.6291,-493.971	0/1:262:141,121:141:4980:121:4336:-311.502,0,-369.487	0/1:235:69,166:69:2410:166:5894:-459.812,0,-146.413	0/0:428:427,1:427:15206:1:36:0,-125.243,-1364.67	0/1:176:70,106:70:2477:106:3780:-287.335,0,-170.202	0/0:180:180,0:180:6303:0:0:0,-54.1854,-567.376	0/1:468:223,245:223:7857:245:8782:-649.375,0,-566.284	0/1:369:178,191:178:6225:191:6835:-504.051,0,-449.284	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:365:365,0:365:12837:0:0:0,-109.876,-1155.18	0/0:204:204,0:204:7280:0:0:0,-61.4101,-655.25	0/1:227:100,127:100:3518:127:4548:-341.126,0,-248.498	0/0:30:30,0:30:1037:0:0:0,-9.0309,-93.637	0/0:65:64,1:64:2264:1:36:0,-15.9687,-200.425	0/1:7:6,1:6:208:1:36:-1.49107,0,-16.9519	0/0:31:31,0:31:1096:0:0:0,-9.33193,-98.9383	0/0:40:40,0:40:1412:0:0:0,-12.0412,-127.377	0/1:181:89,92:89:3164:92:3262:-239.308,0,-230.5	0/1:259:110,149:110:3873:149:5316:-400.37,0,-270.802	0/1:41:19,22:19:680:22:792:-59.2376,0,-49.1836	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:206:91,115:91:3189:115:4107:-307.787,0,-225.225	0/0:37:37,0:37:1304:0:0:0,-11.1381,-117.661	0/0:248:247,1:247:8742:1:36:0,-71.0572,-783.165	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:38:38,0:38:1336:0:0:0,-11.4391,-120.54	0/0:179:179,0:179:6294:0:0:0,-53.8844,-566.564	0/1:228:116,112:116:4083:112:4012:-292.606,0,-299.025	0/1:276:133,143:133:4668:143:5104:-375.959,0,-337.203	0/1:146:62,84:62:2169:84:2992:-225.519,0,-151.526	0/1:162:83,79:83:2916:79:2808:-204.182,0,-213.912	0/0:159:159,0:159:5567:0:0:0,-47.8638,-501.161	0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8116	0/0:188:188,0:188:6552:0:0:0,-56.5936,-589.781	0/0:146:145,1:145:5130:1:36:0,-40.3521,-458.236	0/0:25:25,0:25:876:0:0:0,-7.52575,-79.157	0/0:221:220,1:220:7698:1:36:0,-62.9294,-689.27	0/0:75:75,0:75:2644:0:0:0,-22.5772,-238.209	0/0:15:15,0:15:516:0:0:0,-4.51545,-46.7662	0/1:54:32,22:32:1136:22:792:-55.3477,0,-86.2933	0/0:98:98,0:98:3469:0:0:0,-29.5009,-312.423	0/0:119:119,0:119:4244:0:0:0,-35.8226,-382.141	0/0:16:16,0:16:548:0:0:0,-4.81648,-49.6441	0/0:222:221,1:221:7708:1:36:0,-63.2304,-690.182	0/1:392:182,210:182:6473:210:7511:-557.881,0,-464.656	0/1:105:61,44:61:2176:44:1580:-110.865,0,-164.308	0/0:113:113,0:113:3910:0:0:0,-34.0164,-352.103	0/0:309:307,2:307:10812:2:72:0,-86.1815,-966.168	0/0:237:231,6:231:8143:6:216:0,-51.5536,-712.955	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0708	0/0:82:82,0:82:2881:0:0:0,-24.6845,-259.528	0/1:69:25,44:25:900:44:1568:-120.637,0,-60.5499	0/1:36:22,14:22:764:14:500:-34.4991,0,-58.2424	0/1:265:151,114:151:5247:114:4054:-285.116,0,-392.611	0/1:154:63,91:63:2196:91:3268:-247.975,0,-151.279	0/0:500:499,1:499:17736:1:36:0,-146.917,-1592.13	0/1:226:117,109:117:4108:109:3905:-283.599,0,-301.878	0/1:150:77,73:77:2740:73:2616:-190.434,0,-201.619	0/1:125:50,75:50:1760:75:2685:-203.901,0,-121.055	0/0:44:44,0:44:1525:0:0:0,-13.2453,-137.54	0/0:137:137,0:137:4782:0:0:0,-41.2411,-430.545	0/1:120:62,58:62:2187:58:2084:-151.681,0,-160.964	0/1:280:138,142:138:4818:142:5084:-373.399,0,-349.493	0/1:95:33,62:33:1171:62:2220:-171.396,0,-77.0988	0/1:85:24,61:24:848:61:2169:-169.888,0,-51.0521	0/1:42:20,22:20:704:22:784:-58.1661,0,-51.0413	0/1:145:52,93:52:1856:93:3332:-256.443,0,-123.584	0/1:25:12,13:12:424:13:460:-34.2096,0,-30.9707	0/0:70:70,0:70:2424:0:0:0,-21.0721,-218.417	0/0:42:42,0:42:1476:0:0:0,-12.6433,-133.134	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.45	0/1:116:53,63:53:1841:63:2234:-166.382,0,-131.049	0/1:64:19,45:19:653:45:1616:-125.966,0,-39.8234	0/0:160:160,0:160:5562:0:0:0,-48.1648,-500.716	0/0:96:96,0:96:3420:0:0:0,-28.8989,-307.978
chr01	4029813	.	T	G	48777.8	PASS	AB=0.443029;ABP=45.0717;AC=145;AF=0.771277;AN=188;AO=2304;CIGAR=1X;DP=3148;DPB=3148;DPRA=6.75914;EPP=4893.8;EPPR=1783.99;GTI=2;LEN=1;MEANALT=1;MQM=59.6662;MQMR=59.2299;NS=94;NUMALT=1;ODDS=1.27023;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82255;QR=30225;RO=844;RPL=13;RPP=4893.8;RPPR=1783.99;RPR=2291;RUN=1;SAF=2304;SAP=5006.08;SAR=0;SRF=844;SRP=1835.73;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:648:-58.405,-5.41854,0	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	1/1:46:0,46:0:0:46:1638:-147.708,-13.8474,0	1/1:94:0,94:0:0:94:3348:-301.45,-28.2968,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:21:0,21:0:0:21:756:-68.3668,-6.32163,0	1/1:40:1,39:1:36:39:1393:-122.089,-8.46243,0	1/1:19:0,19:0:0:19:676:-61.1605,-5.71957,0	0/1:31:13,18:13:468:18:648:-49.2941,0,-33.1277	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:12:0,12:0:0:12:417:-37.8611,-3.61236,0	1/1:90:0,90:0:0:90:3213:-289.072,-27.0927,0	0/1:38:23,15:23:807:15:536:-37.1357,0,-61.51	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:42:28,14:28:1008:14:500:-32.6929,0,-78.3916	1/1:35:1,34:1:36:34:1215:-106.063,-6.953,0	1/1:10:0,10:0:0:10:360:-32.7439,-3.0103,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:45:0,45:0:0:45:1596:-143.188,-13.5464,0	0/1:38:24,14:24:860:14:504:-34.258,0,-66.2827	0/1:51:33,18:33:1184:18:648:-43.2634,0,-91.5158	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:32:16,16:16:572:16:557:-40.8226,0,-42.1805	1/1:29:0,29:0:0:29:1044:-94.2524,-8.72987,0	0/1:58:35,23:35:1256:23:828:-57.3394,0,-95.8855	0/1:86:50,36:50:1792:36:1288:-90.335,0,-135.674	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:115:0,115:0:0:115:4122:-371.085,-34.6185,0	1/1:37:0,37:0:0:37:1304:-117.657,-11.1381,0	0/1:26:18,8:18:644:8:288:-18.4406,0,-50.4638	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:13:1,12:1:36:12:428:-35.2758,-0.33034,0	0/0:5:5,0:5:172:0:0:0,-1.50515,-11.915	0/1:30:3,27:3:108:27:955:-77.2334,0,-0.368779	1/1:18:1,17:1:36:17:608:-51.8059,-2.17238,0	0/1:86:56,30:56:2012:30:1072:-70.8681,0,-155.465	0/1:30:16,14:16:572:14:496:-35.9247,0,-42.7718	0/1:27:14,13:14:500:13:468:-34.3318,0,-37.172	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.84654	0/1:31:16,15:16:572:15:540:-39.6046,0,-42.3503	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:41:0,41:0:0:41:1463:-131.951,-12.3422,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:23:0,23:0:0:23:824:-74.4772,-6.92369,0	1/1:45:0,45:0:0:45:1606:-144.794,-13.5464,0	0/1:36:27,9:27:972:9:324:-18.6688,0,-76.9527	0/1:40:24,16:24:843:16:572:-39.4001,0,-64.1468	0/1:32:22,10:22:779:10:360:-23.1113,0,-60.7968	0/1:23:7,16:7:252:16:560:-43.8045,0,-16.1053	1/1:53:0,53:0:0:53:1888:-170.196,-15.9546,0	0/1:31:3,28:3:104:28:1004:-81.3439,0,-0.0910797	1/1:39:1,38:1:36:38:1356:-118.725,-8.1419,0	1/1:26:0,26:0:0:26:929:-83.9256,-7.82678,0	1/1:19:0,19:0:0:19:684:-61.8775,-5.71957,0	1/1:34:0,34:0:0:34:1216:-109.745,-10.235,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:23:1,22:1:36:22:788:-67.2614,-3.34064,0	0/1:12:5,7:5:180:7:243:-18.5951,0,-10.5484	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:49:0,49:0:0:49:1760:-158.028,-14.7505,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:40:0,40:0:0:40:1428:-128.813,-12.0412,0	0/1:64:35,29:35:1248:29:1032:-73.9194,0,-93.3589	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:30:0,30:0:0:30:1076:-97.1391,-9.0309,0	1/1:45:1,44:1:36:44:1534:-137.157,-12.4476,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:36:0,36:0:0:36:1286:-116.033,-10.8371,0	0/1:34:18,16:18:648:16:559:-40.3654,0,-48.4169	0/1:21:12,9:12:432:9:324:-23.0971,0,-32.8996	0/1:118:72,46:72:2572:46:1643:-112.636,0,-194.484	0/1:32:12,20:12:432:20:703:-53.9602,0,-29.5882	1/1:22:1,21:1:36:21:756:-65.9937,-4.24913,0	0/1:66:28,38:28:1004:38:1352:-102.084,0,-70.6492	0/1:18:10,8:10:360:8:284:-20.4272,0,-27.3258	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	1/1:24:0,24:0:0:24:858:-77.5112,-7.22472,0	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	0/1:24:13,11:13:468:11:396:-28.722,0,-35.2349	0/1:63:40,23:40:1436:23:821:-55.2397,0,-110.136	0/1:29:15,14:15:536:14:504:-36.9667,0,-39.8449	0/1:24:14,10:14:504:10:340:-23.7032,0,-38.4734	0/1:14:11,3:11:396:3:108:-5.85729,0,-31.7665	0/1:50:37,13:37:1332:13:464:-27.046,0,-105.131	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:33:0,33:0:0:33:1184:-106.867,-9.93399,0	1/1:27:0,27:0:0:27:968:-87.4354,-8.12781,0	1/1:14:0,14:0:0:14:494:-44.7931,-4.21442,0	0/1:45:23,22:23:828:22:792:-58.0593,0,-61.284	0/1:26:19,7:19:680:7:252:-15.2022,0,-53.7024	1/1:52:0,52:0:0:52:1841:-165.699,-15.6536,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0
chr01	4031098	.	C	T	2578.15	PASS	AB=0.490206;ABP=6.24288;AC=146;AF=0.784946;AN=186;AO=6576;CIGAR=1X;DP=8620;DPB=8620;DPRA=0;EPP=14282.6;EPPR=4441.5;GTI=44;LEN=1;MEANALT=1;MQM=11.0195;MQMR=11.0196;NS=93;NUMALT=1;ODDS=20.4345;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235734;QR=73247;RO=2044;RPL=0;RPP=14282.6;RPPR=4441.5;RPR=6576;RUN=1;SAF=6576;SAP=14282.6;SAR=0;SRF=2044;SRP=4441.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:792:-21.8649,-6.62266,0	0/1:138:68,70:68:2440:70:2520:-29.5919,0,-26.4358	1/1:76:0,76:0:0:76:2728:-77.5128,-22.8783,0	1/1:282:0,282:0:0:282:10099:-264.142,-84.8905,0	1/1:45:0,45:0:0:45:1602:-46.1386,-13.5464,0	1/1:36:0,36:0:0:36:1296:-35.5289,-10.8371,0	1/1:94:0,94:0:0:94:3372:-90.1057,-28.2968,0	1/1:156:0,156:0:0:156:5578:-163.426,-46.9607,0	0/1:44:22,22:22:792:22:788:-8.52764,0,-8.79983	1/1:115:0,115:0:0:115:4105:-106.878,-34.6185,0	1/1:77:0,77:0:0:77:2760:-69.5976,-23.1793,0	1/1:70:0,70:0:0:70:2499:-77.6107,-21.0721,0	0/1:64:26,38:26:927:38:1368:-18.3308,0,-6.63651	1/1:125:0,125:0:0:125:4479:-127.615,-37.6288,0	0/1:40:18,22:18:644:22:792:-9.4216,0,-5.7762	1/1:64:0,64:0:0:64:2295:-63.1196,-19.2659,0	1/1:90:0,90:0:0:90:3221:-88.5393,-27.0927,0	0/1:68:25,43:25:896:43:1540:-21.9776,0,-4.62995	1/1:58:1,57:1:36:57:2052:-54.9268,-16.361,0	1/1:136:1,135:1:36:135:4832:-126.107,-39.9411,0	0/1:70:40,30:40:1428:30:1080:-10.8017,0,-18.5871	0/0:82:61,21:61:2196:21:756:0,-5.70309,-41.5388	1/1:106:0,106:0:0:106:3785:-99.6653,-31.9092,0	0/1:149:84,65:84:3008:65:2340:-19.173,0,-38.2246	1/1:42:0,42:0:0:42:1508:-41.5505,-12.6433,0	0/1:202:110,92:110:3948:92:3304:-22.0975,0,-46.8147	0/1:97:55,42:55:1968:42:1508:-12.1706,0,-25.3822	1/1:50:0,50:0:0:50:1794:-49.3705,-15.0515,0	1/1:278:0,278:0:0:278:9976:-258.231,-83.6863,0	1/1:302:0,302:0:0:302:10820:-307.13,-90.9111,0	0/1:108:66,42:66:2368:42:1497:-8.2281,0,-32.5006	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:284:-7.92806,-2.40824,0	0/1:5:3,2:3:108:2:72:-0.487719,0,-1.57132	1/1:4:0,4:0:0:4:144:-6.3774,-1.20412,0	1/1:9:0,9:0:0:9:323:-9.19066,-2.70927,0	0/1:186:100,86:100:3592:86:3092:-23.9532,0,-42.5523	0/1:144:60,84:60:2144:84:3004:-41.4414,0,-16.1758	0/1:61:29,32:29:1036:32:1148:-13.1192,0,-10.6907	1/1:2:0,2:0:0:2:72:-2.0876,-0.60206,0	0/1:257:114,143:114:4072:143:5132:-65.948,0,-35.3724	1/1:40:0,40:0:0:40:1440:-39.3044,-12.0412,0	1/1:103:0,103:0:0:103:3688:-108.261,-31.0061,0	1/1:79:0,79:0:0:79:2832:-73.3788,-23.7814,0	1/1:76:0,76:0:0:76:2703:-73.7322,-22.8783,0	1/1:45:0,45:0:0:45:1612:-40.6475,-13.5464,0	0/1:99:56,43:56:2004:43:1548:-12.5591,0,-26.5772	0/1:134:54,80:54:1940:80:2864:-32.8535,0,-13.1681	0/1:93:42,51:42:1504:51:1824:-18.4944,0,-13.3728	0/1:244:156,88:156:5600:88:3156:-11.2552,0,-82.0164	1/1:97:0,97:0:0:97:3476:-87.7565,-29.1999,0	1/1:14:0,14:0:0:14:504:-12.778,-4.21442,0	1/1:109:0,109:0:0:109:3908:-109.333,-32.8123,0	1/1:80:0,80:0:0:80:2860:-72.3821,-24.0824,0	1/1:21:0,21:0:0:21:748:-20.6921,-6.32163,0	1/1:87:0,87:0:0:87:3108:-87.6249,-26.1896,0	1/1:46:0,46:0:0:46:1656:-42.089,-13.8474,0	1/1:9:0,9:0:0:9:324:-8.19196,-2.70927,0	0/1:4:2,2:2:72:2:72:-0.694017,0,-0.883481	1/1:113:0,113:0:0:113:4052:-111.126,-34.0164,0	1/1:145:1,144:1:36:144:5180:-131.531,-42.5506,0	1/1:5:0,5:0:0:5:176:-4.59413,-1.50515,0	1/1:270:2,268:2:72:268:9624:-247.874,-79.1905,0	0/1:172:103,69:103:3684:69:2484:-22.4369,0,-49.9055	0/1:86:44,42:44:1580:42:1504:-15.5702,0,-17.7296	1/1:94:0,94:0:0:94:3336:-90.0032,-28.2968,0	1/1:134:0,134:0:0:134:4820:-133.095,-40.338,0	1/1:97:0,97:0:0:97:3480:-90.3707,-29.1999,0	1/1:34:0,34:0:0:34:1220:-33.5494,-10.235,0	1/1:103:0,103:0:0:103:3692:-106.101,-31.0061,0	0/1:108:63,45:63:2264:45:1620:-12.9191,0,-29.7155	0/1:22:11,11:11:392:11:377:-3.33982,0,-4.36244	0/1:89:36,53:36:1280:53:1900:-25.4548,0,-9.09035	0/1:67:37,30:37:1316:30:1061:-9.50314,0,-16.9708	1/1:124:0,124:0:0:124:4440:-126.504,-37.3277,0	0/1:128:75,53:75:2696:53:1892:-10.0249,0,-37.5897	0/1:87:37,50:37:1328:50:1792:-24.9866,0,-10.9563	0/1:141:75,66:75:2688:66:2376:-22.66,0,-32.5423	1/1:6:0,6:0:0:6:216:-6.04306,-1.80618,0	1/1:98:0,98:0:0:98:3524:-96.5676,-29.5009,0	0/1:36:14,22:14:500:22:792:-11.0278,0,-3.38634	0/1:122:54,68:54:1932:68:2444:-24.8725,0,-16.3281	0/1:112:52,60:52:1860:60:2156:-20.5101,0,-17.6302	0/1:82:32,50:32:1148:50:1800:-20.821,0,-6.61705	0/1:59:31,28:31:1112:28:1008:-7.69462,0,-12.912	0/1:144:71,73:71:2540:73:2625:-24.9098,0,-26.3356	0/1:49:22,27:22:788:27:968:-11.8768,0,-7.38261	1/1:64:0,64:0:0:64:2300:-63.0358,-19.2659,0	1/1:62:0,62:0:0:62:2216:-61.4126,-18.6639,0	1/1:83:0,83:0:0:83:2972:-81.7294,-24.9855,0	0/1:91:40,51:40:1440:51:1832:-22.7871,0,-12.2707	0/1:78:51,27:51:1832:27:968:-1.34459,0,-26.79	1/1:106:0,106:0:0:106:3804:-96.3898,-31.9092,0	1/1:67:0,67:0:0:67:2403:-62.2336,-20.169,0
chr01	4031218	.	A	G	31748.7	PASS	AB=0.474426;ABP=26.0015;AC=42;AF=0.223404;AN=188;AO=1932;CIGAR=1X;DP=8998;DPB=8998;DPRA=1.20975;EPP=4137.71;EPPR=14992.5;GTI=2;LEN=1;MEANALT=1.04348;MQM=58.1377;MQMR=59.73;NS=94;NUMALT=1;ODDS=0.627573;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68736;QR=252064;RO=7062;RPL=1926;RPP=4146.34;RPPR=15001.1;RPR=6;RUN=1;SAF=1;SAP=4189.61;SAR=1931;SRF=1;SRP=15329.3;SRR=7061;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:120:119,1:119:4251:1:36:0,-32.5253,-379.066	0/1:65:25,40:25:888:40:1428:-109.245,0,-60.6721	0/0:192:192,0:192:6868:0:0:0,-57.7978,-617.295	0/0:255:255,0:255:9102:0:0:0,-76.7626,-819.056	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.55	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.284	0/0:164:164,0:164:5837:0:0:0,-49.3689,-525.341	0/0:135:134,1:134:4792:1:34:0,-37.2418,-427.519	0/1:107:53,54:53:1892:54:1936:-142.283,0,-138.346	0/0:106:106,0:106:3791:0:0:0,-31.9092,-340.53	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.984	0/0:87:87,0:87:3098:0:0:0,-26.1896,-279.047	0/1:83:45,38:45:1616:38:1355:-97.2081,0,-120.74	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.42	0/1:64:26,38:26:928:38:1338:-101.42,0,-64.5623	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8367	0/1:20:17,3:17:612:3:108:-4.05457,0,-49.1217	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:242:242,0:242:8614:0:0:0,-72.8493,-775.217	0/1:154:84,70:84:3012:70:2469:-176.057,0,-224.895	0/1:118:47,71:47:1657:71:2547:-193.651,0,-113.89	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.95	0/1:51:45,6:45:1612:6:216:-4.42806,0,-130.016	0/0:128:128,0:128:4566:0:0:0,-38.5318,-411.015	0/1:280:107,173:107:3827:173:6199:-473.398,0,-260.276	0/1:293:158,135:158:5656:135:4832:-346.128,0,-420.454	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/0:293:293,0:293:10453:0:0:0,-88.2018,-940.486	0/0:143:143,0:143:5087:0:0:0,-43.0473,-457.961	0/1:101:54,47:54:1923:47:1676:-120.664,0,-142.501	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.76	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8899	1/1:3:0,3:0:0:3:100:-9.33044,-0.90309,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:176:86,90:86:3064:90:3224:-237.228,0,-222.947	0/1:146:93,53:93:3298:53:1896:-126.94,0,-253.012	0/1:44:17,27:17:612:27:972:-74.5502,0,-42.1681	1/1:1:0,1:0:0:1:36:-3.59783,-0.30103,0	0/1:147:70,77:70:2504:77:2733:-201.849,0,-181.314	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1594	0/0:236:236,0:236:8431:0:0:0,-71.0431,-758.564	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.892	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.318	0/0:169:169,0:169:6025:0:0:0,-50.8741,-542.235	0/1:98:55,43:55:1953:43:1536:-108.958,0,-146.543	0/1:155:99,56:99:3552:56:2004:-133.922,0,-273.18	0/1:104:38,66:38:1359:66:2329:-178.459,0,-91.3003	0/1:95:44,51:44:1576:51:1796:-133.253,0,-113.496	0/0:78:77,1:77:2748:1:36:0,-19.8821,-243.888	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7449	0/0:132:132,0:132:4723:0:0:0,-39.736,-424.529	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:127:125,0:125:4439:0:0:0,-37.6287,-399.376	0/0:64:64,0:64:2258:0:0:0,-19.2659,-203.459	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:12:2,10:2:72:10:356:-28.7543,0,-3.22436	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.14	0/0:88:87,1:87:3124:1:36:0,-22.8934,-277.78	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1414	0/0:213:213,0:213:7598:0:0:0,-64.1194,-683.564	0/1:178:121,57:121:4285:57:2035:-129.745,0,-332.206	0/1:56:39,17:39:1396:17:608:-38.1885,0,-108.967	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.195	0/0:188:185,3:185:6608:3:104:0,-46.8931,-585.035	0/0:171:170,1:170:6067:1:36:0,-47.8789,-542.526	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2444	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:39:19,20:19:684:20:716:-52.9783,0,-50.1502	0/1:14:6,8:6:212:8:288:-22.0466,0,-15.2104	0/1:178:98,79:98:3482:79:2788:-196.789,0,-259.939	0/1:111:64,47:64:2280:47:1684:-118.421,0,-172.048	0/0:123:123,0:123:4378:0:0:0,-37.0267,-394.002	0/1:146:76,69:76:2719:69:2437:-175.509,0,-200.827	0/1:92:43,49:43:1544:49:1747:-129.819,0,-111.558	0/1:106:64,42:64:2279:42:1487:-102.206,0,-173.458	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:113:113,0:113:4026:0:0:0,-34.0164,-362.463	0/1:70:41,29:41:1468:29:1032:-72.098,0,-111.342	0/1:252:138,114:138:4952:114:4031:-286.677,0,-369.917	0/1:72:30,42:30:1076:42:1478:-111.468,0,-75.4787	0/1:48:25,23:25:896:23:820:-59.6547,0,-66.51	0/1:43:25,18:25:888:18:633:-44.3316,0,-66.7342	0/1:133:74,59:74:2643:59:2075:-146.916,0,-197.522	0/1:30:15,15:15:536:15:536:-39.5439,0,-39.5439	0/0:95:95,0:95:3374:0:0:0,-28.5978,-303.873	0/0:64:64,0:64:2278:0:0:0,-19.2659,-204.425	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.309	0/1:77:50,27:50:1787:27:972:-64.6022,0,-137.862	0/1:89:32,57:32:1135:57:2001:-153.37,0,-75.6664	0/0:118:118,0:118:4216:0:0:0,-35.5215,-379.454	0/0:87:87,0:87:3132:0:0:0,-26.1896,-281.416
chr01	4071343	.	A	G	169440	PASS	AB=0.49498;ABP=4.1004;AC=146;AF=0.776596;AN=188;AO=7991;CIGAR=1X;DP=10528;DPB=10528;DPRA=22.6301;EPP=17355.2;EPPR=5492.49;GTI=2;LEN=1;MEANALT=1.08602;MQM=59.9807;MQMR=59.9786;NS=94;NUMALT=1;ODDS=0.6452;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286085;QR=90202;RO=2528;RPL=0;RPP=17355.2;RPPR=5492.49;RPR=7991;RUN=1;SAF=7991;SAP=17355.2;SAR=0;SRF=2528;SRP=5492.49;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:119:0,119:0:0:119:4233:-381.151,-35.8226,0	0/1:76:39,37:39:1392:37:1324:-96.5805,0,-102.701	1/1:340:0,340:0:0:340:12185:-1096.49,-102.35,0	1/1:241:0,241:0:0:241:8617:-775.525,-72.5482,0	1/1:127:0,127:0:0:127:4556:-410.205,-38.2308,0	1/1:105:0,105:0:0:105:3737:-336.531,-31.6082,0	0/1:200:99,101:99:3548:101:3628:-266.518,0,-259.322	1/1:177:1,176:1:36:176:6282:-561.874,-49.684,0	0/1:216:113,103:113:4029:103:3650:-262.575,0,-297.776	1/1:159:0,159:0:0:159:5662:-509.671,-47.8638,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	1/1:82:0,81:0:0:81:2904:-261.236,-24.3834,0	0/1:96:43,53:43:1529:53:1896:-142.019,0,-109.002	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:104:50,54:50:1792:54:1936:-143.209,0,-130.255	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	0/1:45:26,19:26:928:19:680:-47.9828,0,-70.291	1/1:36:0,36:0:0:36:1292:-116.583,-10.8371,0	1/1:294:0,293:0:0:293:10520:-946.35,-88.2018,0	0/1:203:63,140:63:2229:140:5004:-389.399,0,-139.764	0/1:102:66,36:66:2357:36:1292:-85.8787,0,-181.682	1/1:131:1,130:1:36:130:4645:-414.605,-35.8367,0	0/1:102:40,62:40:1432:62:2183:-166.026,0,-98.4725	1/1:142:1,141:1:36:141:5056:-451.586,-39.148,0	0/1:253:130,123:130:4630:123:4416:-321.45,0,-340.701	0/1:202:142,60:142:5074:60:2141:-132.148,0,-395.994	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:274:0,274:0:0:274:9840:-885.465,-82.4822,0	1/1:153:0,153:0:0:153:5476:-492.81,-46.0576,0	0/1:122:55,66:55:1976:66:2356:-175.515,0,-141.33	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:19:1,18:1:36:18:648:-55.0536,-2.1213,0	0/1:4:1,2:1:36:2:72:-5.5738,0,-2.33536	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:221:136,85:136:4876:85:3052:-208.378,0,-372.464	0/1:79:47,32:47:1657:32:1144:-79.4881,0,-125.634	0/1:41:25,16:25:885:16:576:-39.8328,0,-67.6243	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:180:84,96:84:3008:96:3437:-255.356,0,-216.766	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:227:1,226:1:36:226:8065:-722.272,-64.7355,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	1/1:155:0,155:0:0:155:5552:-499.804,-46.6597,0	0/1:74:29,45:29:1036:45:1616:-123.454,0,-71.2777	0/1:154:67,87:67:2347:87:3124:-235.026,0,-165.127	0/1:148:78,70:78:2792:70:2516:-182.139,0,-206.968	0/1:130:61,69:61:2188:69:2480:-184.319,0,-158.052	1/1:202:0,202:0:0:202:7217:-649.584,-60.8081,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:100:0,100:0:0:100:3600:-324.201,-30.103,0	1/1:76:0,76:0:0:76:2709:-244.053,-22.8783,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:175:0,175:0:0:175:6268:-564.208,-52.6803,0	1/1:115:0,115:0:0:115:4113:-370.343,-34.6185,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:25:10,15:10:360:15:540:-41.4108,0,-25.2186	1/1:106:1,105:1:36:105:3749:-334.011,-28.3109,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:197:0,197:0:0:197:7038:-633.48,-59.3029,0	0/1:197:77,120:77:2756:120:4292:-327.155,0,-188.979	0/1:85:37,47:37:1328:47:1684:-126.201,0,-94.1759	1/1:115:1,114:1:36:114:4096:-365.226,-31.0202,0	1/1:220:3,217:3:108:217:7773:-689.523,-56.1514,0	1/1:95:4,91:4:140:91:3276:-282.114,-15.6533,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:40:25,15:25:900:15:521:-35.1751,0,-69.2798	0/1:17:10,7:10:360:7:240:-16.8172,0,-27.6268	0/1:133:68,63:68:2417:63:2249:-162.877,0,-177.5	0/1:94:52,42:52:1864:42:1504:-107.358,0,-139.739	1/1:199:0,199:0:0:199:7132:-641.937,-59.905,0	0/1:200:90,110:90:3213:110:3936:-294.226,0,-229.185	0/1:154:88,66:88:3136:66:2372:-167.379,0,-236.108	0/1:149:77,72:77:2737:72:2561:-185.886,0,-201.718	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:179:0,179:0:0:179:6432:-578.964,-53.8844,0	0/1:157:61,95:61:2176:95:3408:-259.613,0,-148.786	0/1:436:174,262:174:6187:262:9366:-711.653,0,-425.678	0/1:57:34,23:34:1205:23:828:-57.6854,0,-91.5952	0/1:67:45,22:45:1616:22:788:-51.0758,0,-125.561	0/1:63:42,21:42:1504:21:752:-49.0414,0,-116.584	0/1:172:96,76:96:3436:76:2720:-193.266,0,-257.676	0/1:32:23,9:23:820:9:320:-19.5094,0,-64.4896	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:41:16,25:16:568:25:900:-68.9788,0,-39.1096	0/1:109:90,19:90:3198:19:684:-29.0781,0,-255.229	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:134:0,133:0:0:133:4772:-429.276,-40.037,0
chr01	4072564	.	C	A	61080.9	PASS	AB=0.450504;ABP=49.4412;AC=145;AF=0.788043;AN=184;AO=2988;CIGAR=1X;DP=4191;DPB=4191;DPRA=0;EPP=6491.37;EPPR=2615.29;GTI=4;LEN=1;MEANALT=1;MQM=59.9458;MQMR=59.9992;NS=92;NUMALT=1;ODDS=0.462619;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105867;QR=42876;RO=1203;RPL=2988;RPP=6491.37;RPPR=2615.29;RPR=0;RUN=1;SAF=2988;SAP=6491.37;SAR=0;SRF=1203;SRP=2615.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1033:-93.2824,-8.72987,0	0/1:42:21,21:21:737:21:748:-55.002,0,-54.0074	1/1:128:0,128:0:0:128:4556:-410.209,-38.5318,0	1/1:50:0,50:0:0:50:1755:-158.233,-15.0515,0	1/1:13:0,13:0:0:13:456:-41.3732,-3.91339,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:41:20,21:20:701:21:752:-55.6585,0,-51.0695	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/1:42:32,10:32:1152:10:345:-18.7376,0,-91.3469	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	1/1:64:0,64:0:0:64:2263:-203.93,-19.2659,0	0/1:53:27,26:27:972:26:928:-67.8837,0,-71.8433	1/1:30:0,30:0:0:30:1046:-94.4484,-9.0309,0	0/1:57:30,27:30:1064:27:945:-68.2044,0,-78.913	1/1:38:0,38:0:0:38:1344:-121.26,-11.4391,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:18:11,7:11:383:7:233:-15.8736,0,-29.3847	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:112:71,41:71:2544:41:1456:-97.6206,0,-195.495	0/1:53:40,13:40:1432:13:464:-26.1429,0,-113.223	1/1:48:0,48:0:0:48:1691:-152.474,-14.4494,0	0/1:50:28,22:28:999:22:784:-55.8324,0,-75.173	1/1:22:0,22:0:0:22:775:-70.0712,-6.62266,0	0/1:120:72,48:72:2588:48:1708:-117.882,0,-197.045	0/1:114:64,50:64:2287:50:1784:-126.525,0,-171.774	1/1:21:0,21:0:0:21:733:-66.2897,-6.32163,0	1/1:112:0,112:0:0:112:3960:-356.593,-33.7154,0	1/1:26:1,25:1:36:25:896:-77.3621,-4.22851,0	0/1:71:29,42:29:1044:42:1466:-110.86,0,-72.9017	1/1:9:0,9:0:0:9:305:-27.7772,-2.70927,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:163:86,77:86:3054:77:2740:-197.776,0,-226.022	0/1:67:35,32:35:1227:32:1152:-83.8211,0,-90.5613	0/1:39:22,17:22:783:17:599:-42.4979,0,-59.0528	.:.:.:.:.:.:.:.	0/1:21:11,10:11:381:10:356:-26.0596,0,-28.299	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:69:0,69:0:0:69:2448:-220.576,-20.7711,0	1/1:26:0,26:0:0:26:924:-83.4721,-7.82678,0	1/1:33:0,33:0:0:33:1164:-105.067,-9.93399,0	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	0/1:44:14,30:14:495:30:1068:-83.1867,0,-31.6377	0/1:72:29,43:29:1044:43:1519:-115.328,0,-72.6006	0/1:50:34,16:34:1207:16:559:-35.5861,0,-93.8838	0/1:42:25,17:25:896:17:599:-41.5948,0,-68.3171	1/1:23:0,23:0:0:23:812:-73.4009,-6.92369,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:45:2,43:2:72:43:1519:-130.166,-6.70963,0	1/1:23:0,23:0:0:23:812:-73.4009,-6.92369,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:50:1,49:1:36:49:1747:-153.913,-11.4532,0	1/1:74:0,74:0:0:74:2635:-237.397,-22.2762,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:57:0,57:0:0:57:2031:-183.062,-17.1587,0	0/1:96:49,47:49:1743:47:1667:-121.418,0,-128.255	0/1:37:19,18:19:684:18:627:-45.6163,0,-50.7522	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:81:0,81:0:0:81:2841:-255.768,-24.3834,0	1/1:90:0,90:0:0:90:3212:-289.304,-27.0927,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:39:0,39:0:0:39:1379:-124.408,-11.7402,0	0/1:28:15,13:15:525:13:464:-33.6687,0,-39.1492	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	0/1:39:18,21:18:644:21:736:-54.7772,0,-46.5504	0/1:29:14,15:14:495:15:540:-40.2067,0,-36.1532	1/1:71:0,71:0:0:71:2486:-223.992,-21.3731,0	0/1:78:56,22:56:2008:22:784:-47.4036,0,-157.513	0/1:57:36,21:36:1287:21:756:-51.2085,0,-98.9737	0/1:49:32,17:32:1137:17:600:-39.5787,0,-87.8865	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:45:25,20:25:891:20:708:-50.4985,0,-66.9624	0/1:94:47,47:47:1659:47:1638:-119.408,0,-121.297	0/1:52:29,23:29:1040:23:795:-56.2132,0,-78.2608	0/1:45:26,19:26:924:19:664:-46.5376,0,-69.9313	0/1:33:19,14:19:676:14:487:-34.2252,0,-51.234	0/1:86:33,53:33:1180:53:1871:-142.673,0,-80.6195	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	1/1:51:0,51:0:0:51:1791:-161.472,-15.3525,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:50:28,22:28:1000:22:776:-55.1078,0,-75.2639	0/1:58:35,23:35:1241:23:824:-57.0236,0,-94.5328	1/1:35:0,35:0:0:35:1232:-111.184,-10.5361,0	1/1:71:0,71:0:0:71:2485:-223.904,-21.3731,0
chr01	4072576	.	G	A	20312.1	PASS	AB=0.547432;ABP=45.239;AC=39;AF=0.211957;AN=184;AO=1187;CIGAR=1X;DP=4156;DPB=4156;DPRA=1.44966;EPP=2580.55;EPPR=6445.77;GTI=4;LEN=1;MEANALT=1;MQM=59.9992;MQMR=59.9751;NS=92;NUMALT=1;ODDS=0.103859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42588;QR=105778;RO=2967;RPL=1187;RPP=2580.55;RPPR=6445.77;RPR=0;RUN=1;SAF=1187;SAP=2580.55;SAR=0;SRF=2967;SRP=6445.77;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:42:23,19:23:816:19:680:-48.8859,0,-61.1185	0/0:129:129,0:129:4597:0:0:0,-38.8329,-413.895	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:42:22,20:22:784:20:716:-52.1245,0,-58.2269	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:42:10,32:10:356:32:1148:-90.9866,0,-19.738	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:53:26,27:26:924:27:972:-71.8433,0,-67.5231	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/1:58:27,31:27:968:31:1116:-83.292,0,-69.9776	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5116	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:110:40,70:40:1403:70:2516:-193.578,0,-93.4503	0/1:54:14,40:14:500:40:1436:-113.282,0,-29.0806	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:48:22,26:22:788:26:936:-70.11,0,-56.7954	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:120:48,72:48:1716:72:2588:-197.045,0,-118.602	0/1:115:50,65:50:1780:65:2340:-176.24,0,-125.864	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:111:111,0:111:3928:0:0:0,-33.4143,-353.715	0/0:26:25,1:25:883:1:36:0,-4.2285,-76.1892	0/1:71:42,29:42:1495:29:1040:-72.5412,0,-113.471	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:160:75,85:75:2664:85:3043:-225.934,0,-191.839	0/1:67:32,35:32:1143:35:1260:-93.5365,0,-83.0097	0/1:37:16,21:16:576:21:756:-57.2291,0,-41.0369	.:.:.:.:.:.:.:.	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.864	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.271	0/1:43:30,13:30:1076:13:468:-29.5154,0,-84.2086	0/1:73:45,28:45:1593:28:1004:-68.7007,0,-121.683	0/1:50:16,34:16:572:34:1205:-93.7024,0,-36.7619	0/1:42:17,25:17:612:25:900:-68.6778,0,-42.7702	0/0:22:22,0:22:765:0:0:0,-6.62266,-69.1677	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:45:43,2:43:1548:2:72:0,-6.70963,-132.776	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7675	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:50:49,1:49:1747:1:36:0,-11.4532,-153.915	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.542	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/1:95:47,48:47:1676:48:1720:-126.488,0,-122.529	0/1:36:18,18:18:644:18:633:-46.458,0,-47.4535	0/0:51:50,0:50:1766:0:0:0,-15.0515,-158.862	0/0:81:80,0:80:2864:0:0:0,-24.0824,-257.746	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.932	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/1:13:8,5:8:288:5:172:-11.9046,0,-22.354	0/1:37:21,16:21:756:16:576:-41.0369,0,-57.1841	0/1:27:13,14:13:459:14:504:-37.5703,0,-33.5163	0/0:71:71,0:71:2505:0:0:0,-21.3731,-225.702	0/1:78:22,56:22:780:56:2014:-158.053,0,-47.0427	0/1:55:20,35:20:720:35:1252:-96.4283,0,-48.5721	0/1:49:17,32:17:608:32:1144:-88.519,0,-40.3016	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:42:18,24:18:644:24:864:-65.4393,0,-45.6473	0/1:91:45,46:45:1588:46:1652:-121.575,0,-115.814	0/1:52:24,28:24:864:28:1008:-75.3828,0,-62.429	0/1:44:19,25:19:676:25:900:-68.0757,0,-47.9227	0/1:33:14,19:14:500:19:680:-51.5952,0,-35.4022	0/1:85:51,34:51:1815:34:1224:-84.8795,0,-137.936	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:50:22,28:22:773:28:1008:-75.9849,0,-54.8289	0/1:57:22,35:22:792:35:1245:-95.194,0,-54.447	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928
chr01	4163444	.	C	T	68639.5	PASS	AB=0.455826;ABP=42.7224;AC=147;AF=0.790323;AN=186;AO=3708;CIGAR=1X;DP=4993;DPB=4993;DPRA=0;EPP=8002.8;EPPR=2743.58;GTI=3;LEN=1;MEANALT=1.03226;MQM=59.9841;MQMR=59.9899;NS=93;NUMALT=1;ODDS=1.86101;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121631;QR=45814;RO=1282;RPL=3708;RPP=8054.83;RPPR=2769.49;RPR=0;RUN=1;SAF=6;SAP=8002.8;SAR=3702;SRF=3;SRP=2760.84;SRR=1279;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:434:-39.3775,-3.91339,0	0/1:38:27,11:27:968:11:347:-20.0946,0,-75.9982	1/1:143:0,142:0:0:142:4669:-420.169,-42.7463,0	1/1:112:1,111:1:36:111:3584:-319.165,-30.1171,0	1/1:17:0,17:0:0:17:585:-52.9719,-5.11751,0	1/1:13:0,13:0:0:13:426:-38.6532,-3.91339,0	0/1:30:14,16:14:504:16:557:-41.4247,0,-36.6672	1/1:77:0,77:0:0:77:2624:-236.407,-23.1793,0	0/1:51:25,26:25:872:26:895:-65.5085,0,-63.4411	1/1:53:0,53:0:0:53:1738:-156.685,-15.9546,0	1/1:55:1,54:1:36:54:1874:-165.337,-12.9584,0	1/1:61:0,61:0:0:61:2077:-187.195,-18.3628,0	0/1:63:30,33:30:1080:33:1077:-78.256,0,-78.5484	1/1:45:0,45:0:0:45:1545:-139.337,-13.5464,0	0/1:55:35,20:35:1260:20:659:-43.0599,0,-97.1488	1/1:48:1,47:1:36:47:1551:-136.268,-10.8512,0	1/1:24:2,22:2:72:22:686:-55.1936,-0.387998,0	0/1:32:22,10:22:792:10:326:-20.0213,0,-61.9727	1/1:22:0,22:0:0:22:750:-67.8124,-6.62266,0	1/1:105:0,105:0:0:105:3383:-304.681,-31.6082,0	0/1:143:81,62:81:2896:62:2052:-141.894,0,-217.829	0/1:14:9,5:9:324:5:165:-10.9592,0,-25.2914	1/1:53:0,53:0:0:53:1730:-155.966,-15.9546,0	0/1:30:18,12:18:644:12:398:-27.1059,0,-49.2597	1/1:25:0,25:0:0:25:813:-73.4666,-7.52575,0	0/1:134:79,55:79:2803:55:1678:-110.941,0,-212.173	0/1:122:62,60:62:2215:60:1976:-141.378,0,-162.888	1/1:26:0,26:0:0:26:860:-77.7,-7.82678,0	1/1:111:0,111:0:0:111:3554:-320.061,-33.4143,0	1/1:59:0,59:0:0:59:1925:-173.51,-17.7608,0	0/1:50:28,22:28:1004:22:713:-49.4168,0,-75.6244	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	1/1:10:0,10:0:0:10:322:-29.2912,-3.0103,0	0/1:144:75,69:75:2671:69:2259:-160.212,0,-197.287	0/1:37:11,26:11:392:26:819:-62.8606,0,-24.4819	0/1:47:24,23:24:852:23:767:-55.1875,0,-62.852	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:65:41,24:41:1468:24:770:-50.0265,0,-112.849	1/1:21:0,21:0:0:21:657:-59.4233,-6.32163,0	1/1:81:0,81:0:0:81:2580:-232.436,-24.3834,0	1/1:90:0,90:0:0:90:3011:-271.216,-27.0927,0	1/1:46:0,46:0:0:46:1496:-134.785,-13.8474,0	1/1:25:0,25:0:0:25:843:-76.1756,-7.52575,0	1/1:45:0,45:0:0:45:1472:-132.756,-13.5464,0	0/1:52:33,19:33:1184:19:597:-38.3713,0,-91.2148	0/1:27:11,16:11:396:16:534:-40.2468,0,-27.8549	0/1:86:37,49:37:1328:49:1533:-112.345,0,-93.9337	1/1:32:0,32:0:0:32:1109:-100.115,-9.63296,0	1/1:5:0,5:0:0:5:164:-15.0839,-1.50515,0	1/1:74:0,74:0:0:74:2510:-226.145,-22.2762,0	1/1:26:0,26:0:0:26:826:-74.6309,-7.82678,0	1/1:6:0,6:0:0:6:197:-18.0513,-1.80618,0	1/1:77:0,76:0:0:76:2423:-218.1,-22.8783,0	1/1:15:0,15:0:0:15:508:-46.0406,-4.51545,0	1/1:7:0,7:0:0:7:222:-20.2892,-2.10721,0	0/1:11:7,4:7:252:4:125:-8.24729,0,-19.7176	1/1:23:0,23:0:0:23:741:-66.9867,-6.92369,0	1/1:76:0,76:0:0:76:2559:-230.556,-22.8783,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:109:0,109:0:0:109:3415:-307.554,-32.8123,0	0/1:73:31,42:31:1101:42:1413:-105.48,0,-77.4232	0/1:19:7,12:7:252:12:424:-32.7768,0,-17.3094	1/1:32:0,32:0:0:32:978:-88.2965,-9.63296,0	1/1:156:0,156:0:0:156:4985:-448.805,-46.9607,0	1/1:128:1,127:1:36:127:3951:-352.181,-34.9336,0	1/1:25:0,25:0:0:25:820:-74.0997,-7.52575,0	1/1:27:0,27:0:0:27:932:-84.1897,-8.12781,0	0/1:41:15,26:15:536:26:867:-65.9909,0,-36.2326	0/1:20:6,14:6:216:14:448:-34.6035,0,-13.7699	0/1:27:11,16:11:392:16:541:-40.8815,0,-27.4922	0/1:38:20,18:20:720:18:617:-44.4108,0,-53.6896	1/1:50:1,49:1:36:49:1645:-144.728,-11.4532,0	0/1:90:55,35:55:1976:35:1183:-79.6728,0,-151.022	0/1:35:18,17:18:640:17:576:-41.6042,0,-47.3933	0/1:54:29,25:29:1036:25:793:-55.4077,0,-77.2983	1/1:6:0,6:0:0:6:204:-18.6934,-1.80618,0	1/1:52:0,52:0:0:52:1642:-147.988,-15.6536,0	0/1:80:38,41:38:1349:41:1327:-95.7139,0,-97.6848	0/1:109:63,46:63:2248:46:1512:-103.543,0,-169.771	0/1:39:25,14:25:892:14:440:-28.1592,0,-68.8595	0/1:61:28,33:28:1008:33:1092:-80.2111,0,-72.6735	0/1:35:17,18:17:604:18:614:-45.0418,0,-44.1546	0/1:104:52,52:52:1860:52:1687:-120.792,0,-136.372	0/1:16:11,5:11:392:5:171:-10.909,0,-30.8036	1/1:52:0,52:0:0:52:1771:-159.664,-15.6536,0	1/1:55:0,55:0:0:55:1905:-171.724,-16.5567,0	1/1:36:0,36:0:0:36:1211:-109.284,-10.8371,0	0/1:68:27,41:27:964:41:1380:-104.017,0,-66.6068	0/1:198:150,48:150:5363:48:1590:-83.7702,0,-423.198	1/1:91:0,91:0:0:91:3066:-276.165,-27.3937,0	1/1:102:1,101:1:36:101:3359:-298.925,-27.1068,0
chr01	4189686	.	T	C	186878	PASS	AB=0.522323;ABP=25.89;AC=149;AF=0.792553;AN=188;AO=8816;CIGAR=1X;DP=11350;DPB=11350;DPRA=0;EPP=19051.3;EPPR=5399.53;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9699;MQMR=59.9842;NS=94;NUMALT=1;ODDS=0.228887;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313697;QR=90552;RO=2529;RPL=11;RPP=19051.3;RPPR=5399.53;RPR=8805;RUN=1;SAF=8816;SAP=19146.7;SAR=0;SRF=2529;SRP=5494.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1715:-154.636,-14.4494,0	0/1:148:56,92:56:2008:92:3277:-250.597,0,-136.441	1/1:256:0,256:0:0:256:9088:-817.671,-77.0637,0	1/1:209:0,209:0:0:209:7434:-669.11,-62.9153,0	1/1:99:0,99:0:0:99:3513:-316.381,-29.802,0	1/1:94:0,94:0:0:94:3305:-297.669,-28.2968,0	0/1:208:106,102:106:3798:102:3643:-265.46,0,-279.402	1/1:192:0,192:0:0:192:6851:-616.662,-57.7978,0	0/1:120:57,63:57:2039:63:2236:-165.381,0,-147.658	1/1:123:0,123:0:0:123:4355:-392.067,-37.0267,0	1/1:67:0,67:0:0:67:2383:-214.728,-20.169,0	1/1:55:0,55:0:0:55:1964:-177.032,-16.5567,0	0/1:70:37,33:37:1332:33:1184:-85.7962,0,-99.1103	1/1:100:0,100:0:0:100:3558:-320.429,-30.103,0	0/1:60:25,35:25:900:35:1239:-93.7519,0,-63.2592	1/1:50:0,50:0:0:50:1783:-160.739,-15.0515,0	1/1:65:0,65:0:0:65:2299:-207.171,-19.567,0	0/1:50:21,29:21:756:29:1027:-77.6907,0,-53.3157	1/1:26:0,26:0:0:26:923:-83.3868,-7.82678,0	1/1:225:0,225:0:0:225:7999:-719.937,-67.7318,0	0/1:135:52,83:52:1864:83:2976:-227.433,0,-127.4	0/1:113:79,34:79:2824:34:1216:-75.7302,0,-220.383	1/1:128:0,128:0:0:128:4536:-408.279,-38.5318,0	0/1:128:64,63:64:2296:63:2260:-165.072,0,-168.31	1/1:116:0,116:0:0:116:4125:-371.435,-34.9195,0	0/1:389:206,182:206:7360:182:6505:-468.534,0,-545.447	0/1:265:132,133:132:4727:133:4716:-344.828,0,-345.815	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:340:0,340:0:0:340:12105:-1089.3,-102.35,0	1/1:265:1,264:1:36:264:9378:-840.392,-76.1747,0	0/1:180:69,111:69:2467:111:3944:-300.967,0,-168.098	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:23:0,23:0:0:23:807:-72.9492,-6.92369,0	0/1:185:104,81:104:3732:81:2875:-203.297,0,-280.389	0/1:325:125,200:125:4488:200:7136:-544.464,0,-306.253	0/1:59:28,31:28:996:31:1112:-82.6306,0,-72.1941	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:174:86,88:86:3092:88:3141:-230.536,0,-226.128	1/1:33:0,33:0:0:33:1171:-105.692,-9.93399,0	1/1:202:0,202:0:0:202:7200:-648.058,-60.8081,0	1/1:59:0,59:0:0:59:2082:-187.639,-17.7608,0	1/1:58:0,58:0:0:58:2049:-184.68,-17.4597,0	1/1:135:0,134:0:0:134:4755:-427.752,-40.338,0	1/1:203:0,203:0:0:203:7269:-654.257,-61.1091,0	0/1:209:97,112:97:3473:112:3982:-295.656,0,-249.864	0/1:130:70,60:70:2496:60:2108:-150.853,0,-185.759	0/1:155:64,91:64:2292:91:3261:-247.05,0,-159.882	1/1:188:0,188:0:0:188:6705:-603.527,-56.5936,0	1/1:20:0,20:0:0:20:704:-63.6771,-6.0206,0	1/1:251:0,251:0:0:251:8964:-806.612,-75.5585,0	1/1:100:0,99:0:0:99:3519:-316.601,-29.802,0	1/1:60:0,60:0:0:60:2135:-192.418,-18.0618,0	1/1:179:2,177:2:72:177:6303:-560.53,-47.0476,0	1/1:72:0,72:0:0:72:2579:-232.356,-21.6742,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:30:14,16:14:500:16:558:-41.5156,0,-36.3053	1/1:84:0,84:0:0:84:2987:-269.063,-25.2865,0	1/1:126:2,124:2:72:124:4443:-393.204,-31.0931,0	1/1:6:0,6:0:0:6:204:-18.6934,-1.80618,0	1/1:217:0,217:0:0:217:7682:-691.4,-65.3235,0	0/1:225:112,113:112:4003:113:4017:-293.986,0,-292.728	0/1:91:50,41:50:1777:41:1457:-104.031,0,-132.817	1/1:132:0,132:0:0:132:4710:-424.06,-39.736,0	1/1:260:2,258:2:72:258:9196:-820.778,-71.4311,0	1/1:180:0,180:0:0:180:6424:-578.247,-54.1854,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:128:0,128:0:0:128:4562:-410.747,-38.5318,0	0/1:76:40,36:40:1440:36:1292:-93.7055,0,-107.019	0/1:36:23,13:23:828:13:464:-31.2604,0,-64.007	0/1:152:76,76:76:2732:76:2693:-196.857,0,-200.366	0/1:85:47,38:47:1684:38:1337:-95.0414,0,-126.259	1/1:217:0,217:0:0:217:7713:-694.208,-65.3235,0	0/1:170:72,98:72:2584:98:3487:-262.867,0,-181.634	0/1:188:66,122:66:2372:122:4329:-333.195,0,-157.144	0/1:111:53,58:53:1891:58:2057:-151.987,0,-137.045	1/1:21:0,21:0:0:21:733:-66.2905,-6.32163,0	1/1:154:0,154:0:0:154:5473:-492.7,-46.3586,0	0/1:146:69,77:69:2459:77:2718:-200.911,0,-176.837	0/1:314:150,163:150:5363:163:5823:-429.602,0,-388.22	0/1:92:32,60:32:1152:60:2126:-163.913,0,-76.2954	0/1:61:34,27:34:1220:27:968:-69.0745,0,-91.744	0/1:76:31,45:31:1112:45:1589:-120.42,0,-77.5131	0/1:123:60,63:60:2144:63:2220:-163.037,0,-156.201	0/1:47:20,27:20:720:27:968:-73.289,0,-50.9804	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:63:0,63:0:0:63:2248:-202.584,-18.9649,0	1/1:66:0,66:0:0:66:2338:-210.679,-19.868,0	0/1:113:62,51:62:2207:51:1828:-130.785,0,-164.878	0/1:44:32,12:32:1136:12:428:-25.6135,0,-89.3036	1/1:137:0,137:0:0:137:4877:-439.037,-41.2411,0	1/1:67:0,67:0:0:67:2370:-213.557,-20.169,0
chr01	4192546	.	ACTGTT	ACTGTC,GCTATC	234347	PASS	AB=0.497165,0.496907;ABP=3.28117,3.33266;AC=147,41;AF=0.781915,0.218085;AN=188;AO=6286,1936;CIGAR=5M1X,1X2M1X1M1X;DP=8286;DPB=8285.83;DPRA=29.6882,1.18397;EPP=10361.7,2953.88;EPPR=9.52472;GTI=1;LEN=1,6;MEANALT=2.06452,2.54545;MQM=59.9841,57.0274;MQMR=60;NS=94;NUMALT=2;ODDS=0.333129;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=224172,68118;QR=96;RO=3;RPL=3470,1020;RPP=150.763,15.1418;RPPR=3.73412;RPR=2816,916;RUN=1,1;SAF=3065,863;SAP=11.4171,52.4741;SAR=3221,1073;SRF=1;SRP=3.73412;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,56,0:0:0:56,0:1999,0:-179.892,-16.8577,0,-179.892,-16.8577,-179.892	1/2:70:0,31,38:0:0:31,38:1101,1345:-199.104,-109.391,-100.06,-89.7068,0,-78.2676	1/1:91:0,90,0:0:0:90,0:3210,0:-288.762,-27.0927,0,-288.762,-27.0927,-288.762	1/1:95:0,94,0:0:0:94,0:3353,0:-301.646,-28.2968,0,-301.646,-28.2968,-301.646	1/1:79:0,76,2:0:0:76,2:2693,71:-242.308,-22.8783,0,-236.531,-16.9982,-235.929	1/1:48:0,48,0:0:0:48,0:1716,0:-154.726,-14.4494,0,-154.726,-14.4494,-154.726	1/2:87:0,34,51:0:0:34,51:1209,1811:-245.998,-147.473,-137.238,-98.527,0,-83.1745	1/1:110:0,109,1:0:0:109,1:3895,33:-350.483,-32.8123,0,-348.442,-30.5104,-348.141	1/2:148:0,70,76:0:0:70,76:2501,2631:-416.904,-212.995,-191.922,-203.951,0,-181.072	1/1:86:0,83,0:0:0:83,0:2971,0:-267.278,-24.9855,0,-267.278,-24.9855,-267.278	1/1:104:0,102,0:0:0:102,0:3668,0:-329.972,-30.7051,0,-329.972,-30.7051,-329.972	1/1:223:0,222,0:0:0:222,0:7916,0:-712.19,-66.8287,0,-712.19,-66.8287,-712.19	1/2:134:0,68,66:0:0:68,66:2439,2331:-388.73,-189.791,-169.321,-199.294,0,-179.426	1/1:149:0,147,0:0:0:147,0:5259,0:-473.185,-44.2514,0,-473.185,-44.2514,-473.185	1/2:119:0,71,48:0:0:71,48:2539,1690:-344.747,-137.713,-116.34,-207.387,0,-192.938	1/1:133:0,131,0:0:0:131,0:4677,0:-420.731,-39.4349,0,-420.731,-39.4349,-420.731	1/1:97:0,96,0:0:0:96,0:3424,0:-307.857,-28.8989,0,-307.857,-28.8989,-307.857	1/2:71:0,44,27:0:0:44,27:1568,946:-205.054,-77.2402,-63.9949,-128.166,0,-120.038	1/1:59:0,59,0:0:0:59,0:2082,0:-187.649,-17.7608,0,-187.649,-17.7608,-187.649	1/1:130:0,130,0:0:0:130,0:4603,0:-414.435,-39.1339,0,-414.435,-39.1339,-414.435	1/2:150:0,64,83:0:0:64,83:2275,2883:-418.75,-233.354,-214.088,-185.428,0,-160.443	1/2:44:0,17,27:0:0:17,27:612,933:-126.067,-76.1249,-71.0074,-50.2959,0,-42.1681	1/1:66:0,66,0:0:0:66,0:2344,0:-211.215,-19.868,0,-211.215,-19.868,-211.215	1/2:86:0,43,43:0:0:43,43:1532,1503:-247.303,-122.427,-109.483,-125.229,0,-112.285	1/1:88:0,88,0:0:0:88,0:3147,0:-283.455,-26.4906,0,-283.455,-26.4906,-283.455	1/2:193:0,86,105:0:0:86,105:3066,3700:-551.053,-301.128,-275.239,-249.945,0,-218.337	1/2:154:0,71,83:0:0:71,83:2552,2924:-446.416,-238.215,-216.842,-208.557,0,-183.571	1/1:88:0,86,0:0:0:86,0:3066,0:-275.809,-25.8886,0,-275.809,-25.8886,-275.809	1/1:150:0,146,0:0:0:146,0:5232,0:-470.661,-43.9504,0,-470.661,-43.9504,-470.661	1/1:74:0,71,0:0:0:71,0:2521,0:-226.817,-21.3731,0,-226.817,-21.3731,-226.817	1/2:77:0,35,42:0:0:35,42:1244,1487:-222.697,-121.323,-110.787,-101.729,0,-89.0854	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:6:0,6,0:0:0:6,0:208,0:-19.0591,-1.80618,0,-19.0591,-1.80618,-19.0591	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:319:0,173,144:0:0:173,144:6184,5084:-917.964,-413.737,-361.659,-504.306,0,-460.957	1/2:64:0,28,36:0:0:28,36:1004,1260:-184.536,-102.643,-94.2142,-82.247,0,-71.4099	1/2:103:0,59,43:0:0:59,43:2105,1512:-294.351,-122.745,-104.984,-171.687,0,-158.742	1/2:9:0,2,7:0:0:2,7:72,252:-26.7826,-20.9078,-20.3057,-6.23466,0,-4.12745	1/2:134:0,73,61:0:0:73,61:2578,2144:-384.581,-174.651,-152.676,-210.281,0,-191.918	1/1:56:0,56,0:0:0:56,0:1982,0:-178.653,-16.8577,0,-178.653,-16.8577,-178.653	1/1:138:0,137,0:0:0:137,0:4907,0:-441.5,-41.2411,0,-441.5,-41.2411,-441.5	1/1:125:1,124,0:1:36:124,0:4424,0:-394.733,-34.0305,0,-395.034,-37.3277,-397.972	1/1:137:0,136,0:0:0:136,0:4838,0:-435.236,-40.9401,0,-435.236,-40.9401,-435.236	1/1:68:0,67,0:0:0:67,0:2388,0:-214.818,-20.169,0,-214.818,-20.169,-214.818	1/1:62:0,62,0:0:0:62,0:2204,0:-198.623,-18.6639,0,-198.623,-18.6639,-198.623	1/2:79:0,37,42:0:0:37,42:1320,1462:-226.494,-118.882,-107.744,-107.964,0,-95.3206	1/2:39:0,22,17:0:0:22,17:773,603:-112.385,-49.4715,-42.8488,-63.2668,0,-58.1493	1/2:99:0,48,50:0:0:48,50:1724,1766:-284.38,-143.74,-129.29,-140.639,0,-125.588	1/1:83:0,82,0:0:0:82,0:2913,0:-262.044,-24.6845,0,-262.044,-24.6845,-262.044	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:61:0,61,0:0:0:61,0:2171,0:-195.656,-18.3628,0,-195.656,-18.3628,-195.656	1/1:41:0,41,0:0:0:41,0:1476,0:-133.136,-12.3422,0,-133.136,-12.3422,-133.136	1/1:9:0,9,0:0:0:9,0:316,0:-28.7783,-2.70927,0,-28.7783,-2.70927,-28.7783	1/1:52:0,52,0:0:0:52,0:1855,0:-167.229,-15.6536,0,-167.229,-15.6536,-167.229	1/1:40:0,39,0:0:0:39,0:1375,0:-123.708,-11.7402,0,-123.708,-11.7402,-123.708	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:12:0,7,4:0:0:7,4:237,135:-30.2363,-11.0119,-8.90473,-19.2914,0,-18.0873	1/1:82:0,82,0:0:0:82,0:2920,0:-263.033,-24.6845,0,-263.033,-24.6845,-263.033	1/1:172:1,171,0:1:36:171,0:6113,0:-546.659,-48.1789,0,-546.96,-51.4761,-549.897	1/1:10:0,9,0:0:0:9,0:320,0:-28.783,-2.70927,0,-28.783,-2.70927,-28.783	1/1:64:0,64,0:0:0:64,0:2304,0:-207.62,-19.2659,0,-207.62,-19.2659,-207.62	1/2:121:0,46,74:0:0:46,74:1630,2624:-346.633,-213.846,-199.999,-132.937,0,-110.661	1/2:64:0,34,30:0:0:34,30:1224,1056:-186.075,-86.1988,-75.9638,-100.232,0,-91.2011	1/1:51:0,51,0:0:0:51,0:1815,0:-163.631,-15.3525,0,-163.631,-15.3525,-163.631	1/1:64:0,63,1:0:0:63,1:2260,35:-203.313,-18.9649,0,-200.465,-15.7673,-200.164	1/1:92:0,90,1:0:0:90,1:3195,36:-287.466,-27.0927,0,-284.531,-24.1028,-284.23	1/1:72:0,72,0:0:0:72,0:2572,0:-231.73,-21.6742,0,-231.73,-21.6742,-231.73	1/1:41:0,41,0:0:0:41,0:1449,0:-130.704,-12.3422,0,-130.704,-12.3422,-130.704	1/2:85:0,46,38:0:0:46,38:1630,1349:-242.191,-109.405,-95.5577,-132.782,0,-121.343	1/2:19:0,10,9:0:0:10,9:360,317:-55.5259,-26.1475,-23.1372,-29.734,0,-27.0247	1/2:58:0,21,37:0:0:21,37:756,1315:-169.1,-107.412,-101.09,-62.0456,0,-50.9075	1/2:33:0,17,16:0:0:17,16:593,563:-94.3664,-46.1393,-41.0218,-48.5772,0,-43.7607	1/1:163:0,163,0:0:0:163,0:5787,0:-520.936,-49.0679,0,-520.936,-49.0679,-520.936	1/2:122:0,59,62:0:0:59,62:2093,2201:-349.816,-179.293,-161.532,-170.635,0,-151.971	1/2:113:0,47,66:0:0:47,66:1673,2348:-327.856,-191.504,-177.356,-136.707,0,-116.839	1/2:56:0,31,25:0:0:31,25:1108,871:-161.091,-70.7436,-61.4117,-90.6991,0,-83.1733	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:61:0,60,0:0:0:60,0:2148,0:-193.228,-18.0618,0,-193.228,-18.0618,-193.228	1/2:100:0,34,66:0:0:34,66:1201,2335:-287.956,-190.15,-179.915,-98.1586,0,-78.2907	1/2:116:0,53,63:0:0:53,63:1873,2203:-331.795,-179.254,-163.299,-152.893,0,-133.928	1/2:77:0,45,32:0:0:45,32:1612,1138:-224.463,-92.9961,-79.4498,-131.824,0,-122.191	1/2:130:0,69,60:0:0:69,60:2456,2102:-371.038,-170.867,-150.096,-200.164,0,-182.103	1/2:106:0,68,38:0:0:68,38:2432,1332:-306.963,-108.65,-88.1802,-198.666,0,-187.226	1/2:230:0,132,96:0:0:132,96:4740,3371:-660.774,-274.107,-234.371,-386.73,0,-357.831	1/2:41:0,24,17:0:0:24,17:860,583:-117.567,-47.418,-40.1933,-70.4971,0,-65.3796	1/1:124:1,123,0:1:24:123,0:4379,0:-391.88,-34.9278,0,-392.181,-37.0267,-394.039	1/1:138:0,137,0:0:0:137,0:4895,0:-440.362,-41.2411,0,-440.362,-41.2411,-440.362	1/1:76:0,74,0:0:0:74,0:2620,0:-235.69,-22.2762,0,-235.69,-22.2762,-235.69	1/2:113:0,63,50:0:0:63,50:2264,1756:-327.764,-143.061,-124.096,-185.057,0,-170.006	1/2:105:0,47,56:0:0:47,56:1683,1969:-297.392,-160.139,-145.99,-137.253,0,-120.395	1/1:84:0,84,0:0:0:84,0:3016,0:-271.668,-25.2865,0,-271.668,-25.2865,-271.668	1/1:257:0,254,0:0:0:254,0:9039,0:-813.147,-76.4616,0,-813.147,-76.4616,-813.147
chr01	4210340	.	T	C	31236.5	PASS	AB=0.534068;ABP=37.7797;AC=41;AF=0.218085;AN=188;AO=1847;CIGAR=1X;DP=7350;DPB=7350;DPRA=1.25058;EPP=4013.72;EPPR=11948.3;GTI=2;LEN=1;MEANALT=1.04444;MQM=59.9621;MQMR=59.9942;NS=94;NUMALT=1;ODDS=0.845383;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65572;QR=196640;RO=5501;RPL=0;RPP=4013.72;RPPR=11948.3;RPR=1847;RUN=1;SAF=0;SAP=4013.72;SAR=1847;SRF=0;SRP=11948.3;SRR=5501;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:65:37,28:37:1324:28:1008:-71.4694,0,-99.8951	0/0:132:132,0:132:4718:0:0:0,-39.736,-424.779	0/0:161:161,0:161:5759:0:0:0,-48.4658,-518.425	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:66:19,47:19:680:47:1676:-131.259,0,-41.6612	0/0:160:160,0:160:5684:0:0:0,-48.1648,-511.682	0/1:103:42,61:42:1512:61:2177:-165.189,0,-105.369	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:113:112,1:112:4007:1:36:0,-30.4181,-357.221	0/1:71:34,37:34:1208:37:1312:-97.0085,0,-87.653	0/0:65:65,0:65:2304:0:0:0,-19.5669,-207.619	0/1:86:37,49:37:1323:49:1744:-131.356,0,-93.4827	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/0:48:48,0:48:1706:0:0:0,-14.4494,-153.824	0/0:135:132,2:132:4724:2:72:0,-33.8611,-418.483	0/1:136:64,72:64:2295:72:2553:-189.079,0,-165.87	0/1:53:22,31:22:788:31:1112:-84.4358,0,-55.2902	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.013	0/1:58:23,35:23:824:35:1250:-95.2878,0,-57.0236	0/0:109:109,0:109:3888:0:0:0,-32.8123,-350.113	0/1:194:114,80:114:4067:80:2834:-196.899,0,-307.818	0/1:141:49,92:49:1735:92:3296:-254.412,0,-113.987	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:173:173,0:173:6212:0:0:0,-52.0782,-559.174	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/1:83:49,34:49:1743:34:1196:-82.9571,0,-132.168	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:5:2,3:2:72:3:99:-7.73143,0,-5.33157	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:194:89,105:89:3158:105:3748:-279.121,0,-226.046	0/1:130:74,56:74:2639:56:1976:-138.978,0,-198.623	0/1:73:36,37:36:1288:37:1290:-94.4214,0,-94.2484	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:131:60,71:60:2148:71:2540:-189.416,0,-154.153	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:97:97,0:97:3449:0:0:0,-29.1999,-310.623	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.45	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:105:105,0:105:3755:0:0:0,-31.6081,-338.15	0/1:122:68,54:68:2423:54:1893:-133.919,0,-181.6	0/1:74:40,34:40:1424:34:1209:-86.8379,0,-106.181	0/1:82:40,42:40:1436:42:1500:-110.61,0,-104.853	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:96:95,1:95:3391:1:36:0,-25.3006,-301.807	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.49	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:119:119,0:119:4246:0:0:0,-35.8226,-382.312	0/1:147:60,87:60:2144:87:3081:-233.266,0,-148.976	0/1:57:26,31:26:936:31:1108:-82.8723,0,-67.4008	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/0:111:111,0:111:3971:0:0:0,-33.4143,-357.58	0/0:110:110,0:110:3935:0:0:0,-33.1133,-354.342	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/1:45:20,25:20:720:25:900:-67.7747,0,-51.5824	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/1:105:48,57:48:1728:57:2048:-152.983,0,-124.197	0/1:84:36,48:36:1292:48:1728:-130.501,0,-91.2972	0/0:136:135,1:135:4816:1:36:0,-37.3418,-429.996	0/1:115:56,59:56:1994:59:2082:-153.03,0,-145.114	0/1:85:39,46:39:1387:46:1648:-123.021,0,-99.5406	0/1:73:34,39:34:1220:39:1355:-100.269,0,-88.1316	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:68:30,38:30:1076:38:1317:-98.327,0,-76.6828	0/1:151:68,82:68:2440:82:2948:-220.143,0,-174.444	0/1:62:25,37:25:896:37:1316:-100.078,0,-62.2965	0/1:68:39,29:39:1396:29:1025:-72.0907,0,-105.469	0/1:52:26,26:26:932:26:917:-67.191,0,-68.5453	0/1:129:49,80:49:1742:80:2793:-212.775,0,-118.23	0/1:31:14,17:14:504:17:595:-44.5447,0,-36.3662	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.541	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:143:66,77:66:2360:77:2691:-199.385,0,-169.611	0/1:106:36,70:36:1271:70:2491:-192.534,0,-82.7829	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:110:110,0:110:3919:0:0:0,-33.1133,-352.904
chr01	4217878	.	CGG	CGT,TGA	108134	PASS	AB=0.441948,0.554682;ABP=81.167,72.3543;AC=148,38;AF=0.795699,0.204301;AN=186;AO=3638,1483;CIGAR=2M1X,1X1M1X;DP=5144;DPB=5145;DPRA=0,1.70694;EPP=7876.79,3223.3;EPPR=11.6962;GTI=7;LEN=1,3;MEANALT=1.63441,2.2;MQM=59.7622,42.4801;MQMR=60;NS=93;NUMALT=2;ODDS=0.813625;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=108,0;PQR=0;PRO=2;QA=129506,52371;QR=121;RO=4;RPL=8,2;RPP=7833.49,3205.96;RPPR=11.6962;RPR=3630,1481;RUN=1,1;SAF=9,2;SAP=7824.85,3205.96;SAR=3629,1481;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16,0:0:0:16,0:563,0:-50.9992,-4.81648,0,-50.9992,-4.81648,-50.9992	1/2:38:0,15,23:0:0:15,23:540,819:-109.704,-65.6383,-61.1228,-44.4211,0,-37.4974	1/1:69:0,69,0:0:0:69,0:2476,0:-222.866,-20.7711,0,-222.866,-20.7711,-222.866	1/1:91:0,91,0:0:0:91,0:3248,0:-292.542,-27.3937,0,-292.542,-27.3937,-292.542	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:11:0,11,0:0:0:11,0:381,0:-34.6206,-3.31133,0,-34.6206,-3.31133,-34.6206	1/2:65:0,41,24:0:0:41,24:1476,830:-186.363,-65.9143,-53.5721,-120.794,0,-113.569	1/1:41:0,41,0:0:0:41,0:1442,0:-130.072,-12.3422,0,-130.072,-12.3422,-130.072	1/2:42:0,13,29:0:0:13,29:453,1025:-117.715,-80.8837,-76.9703,-37.178,0,-28.4482	1/1:63:0,62,0:0:0:62,0:2217,0:-199.511,-18.6639,0,-199.511,-18.6639,-199.511	1/1:47:0,47,0:0:0:47,0:1654,0:-149.141,-14.1484,0,-149.141,-14.1484,-149.141	1/1:76:0,76,0:0:0:76,0:2728,0:-245.617,-22.8783,0,-245.617,-22.8783,-245.617	1/2:57:2,27,28:2:57:27,28:972,993:-153.39,-74.6757,-71.0706,-74.8583,0,-70.9512	1/1:78:0,77,0:0:0:77,0:2756,0:-247.888,-23.1793,0,-247.888,-23.1793,-247.888	1/2:45:0,26,19:0:0:26,19:932,678:-129.949,-53.9328,-46.106,-76.3674,0,-70.6478	1/1:53:0,53,0:0:0:53,0:1873,0:-168.847,-15.9546,0,-168.847,-15.9546,-168.847	1/1:28:0,28,0:0:0:28,0:962,0:-86.8709,-8.42884,0,-86.8709,-8.42884,-86.8709	1/2:31:0,14,17:0:0:14,17:496,585:-86.8662,-46.4518,-42.2374,-40.7598,0,-35.6423	1/1:12:0,12,0:0:0:12,0:428,0:-38.8506,-3.61236,0,-38.8506,-3.61236,-38.8506	1/1:76:0,76,0:0:0:76,0:2713,0:-244.407,-22.8783,0,-244.407,-22.8783,-244.407	1/2:118:0,38,80:0:0:38,80:1341,2847:-336.352,-227.154,-215.715,-109.549,0,-85.4665	1/2:32:0,9,22:0:0:9,22:309,770:-86.6689,-61.5821,-58.8728,-25.0725,0,-18.4498	1/1:27:0,27,0:0:0:27,0:960,0:-86.7159,-8.12781,0,-86.7159,-8.12781,-86.7159	1/2:28:0,6,22:0:0:6,22:216,785:-79.4421,-61.8142,-60.008,-17.9843,0,-11.3617	1/1:18:0,17,0:0:0:17,0:597,0:-53.6923,-5.11751,0,-53.6923,-5.11751,-53.6923	1/2:204:0,99,105:0:0:99,105:3533,3682:-581.328,-293.397,-263.595,-288.281,0,-256.673	1/2:133:0,75,58:0:0:75,58:2677,2045:-380.339,-162.11,-139.532,-218.578,0,-201.118	1/1:25:0,25,0:0:0:25,0:900,0:-81.3164,-7.52575,0,-81.3164,-7.52575,-81.3164	1/1:171:0,171,0:0:0:171,0:6102,0:-549.277,-51.4761,0,-549.277,-51.4761,-549.277	1/1:82:0,82,0:0:0:82,0:2952,0:-265.894,-24.6845,0,-265.894,-24.6845,-265.894	1/2:62:0,24,37:0:0:24,37:852,1325:-174.52,-105.093,-97.8679,-69.5486,0,-58.4104	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:148:0,65,82:0:0:65,82:2332,2911:-421.829,-231.61,-212.043,-190.321,0,-165.637	1/2:78:0,44,34:0:0:44,34:1569,1202:-223.025,-95.1245,-81.8791,-128.25,0,-118.015	1/2:35:0,18,17:0:0:18,17:648,598:-100.746,-47.8647,-42.4462,-53.2333,0,-48.1158	.:.:.:.:.:.:.:.	1/2:75:0,29,46:0:0:29,46:1021,1634:-213.068,-129.952,-121.222,-83.4658,0,-69.6184	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:35:0,34,1:0:0:34,1:1220,36:-109.747,-10.235,0,-106.81,-6.93822,-106.509	1/1:31:0,30,0:0:0:30,0:1072,0:-96.4856,-9.0309,0,-96.4856,-9.0309,-96.4856	1/1:44:0,44,0:0:0:44,0:1529,0:-137.894,-13.2453,0,-137.894,-13.2453,-137.894	1/1:31:0,31,0:0:0:31,0:1093,0:-98.6777,-9.33193,0,-98.6777,-9.33193,-98.6777	1/1:23:0,23,0:0:0:23,0:820,0:-74.1225,-6.92369,0,-74.1225,-6.92369,-74.1225	1/2:78:0,22,55:0:0:22,55:788,1937:-215.591,-151.323,-144.701,-64.413,0,-47.8563	1/2:58:0,23,35:0:0:23,35:813,1212:-162.463,-96.3315,-89.4079,-66.479,0,-55.9429	1/2:109:0,35,74:0:0:35,74:1256,2624:-310.351,-207.896,-197.36,-102.809,0,-80.533	1/1:68:0,67,0:0:0:67,0:2344,0:-210.849,-20.169,0,-210.849,-20.169,-210.849	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:33:0,33,0:0:0:33,0:1157,0:-104.341,-9.93399,0,-104.341,-9.93399,-104.341	1/1:49:0,49,0:0:0:49,0:1730,0:-155.979,-14.7505,0,-155.979,-14.7505,-155.979	1/1:8:0,8,0:0:0:8,0:288,0:-26.2496,-2.40824,0,-26.2496,-2.40824,-26.2496	1/1:87:0,87,0:0:0:87,0:3090,0:-278.174,-26.1896,0,-278.174,-26.1896,-278.174	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:17:0,2,15:0:0:2,15:72,525:-48.179,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chr01	4217928	.	T	C	24029.1	PASS	AB=0.545555;ABP=51.8776;AC=38;AF=0.204301;AN=186;AO=1480;CIGAR=1X;DP=5245;DPB=5245;DPRA=1.71761;EPP=3216.79;EPPR=8163.41;GTI=6;LEN=1;MEANALT=1.07692;MQM=42.5223;MQMR=59.7204;NS=93;NUMALT=1;ODDS=0.107649;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52843;QR=134861;RO=3762;RPL=1480;RPP=3216.79;RPPR=8172.09;RPR=0;RUN=1;SAF=0;SAP=3216.79;SAR=1480;SRF=1;SRP=8163.41;SRR=3761;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:37:14,23:14:504:23:824:-61.8533,0,-34.56	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.062	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:65:41,24:41:1476:24:856:-55.6779,0,-113.569	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:43:14,29:14:500:29:1032:-77.096,0,-32.3755	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.548	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.565	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.094	0/1:60:32,28:32:1152:28:995:-69.9541,0,-85.9283	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.84	0/1:47:28,19:28:1008:19:671:-44.906,0,-76.8833	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.7207	0/1:30:14,16:14:500:16:572:-41.1425,0,-36.3053	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4514	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.594	0/1:119:40,79:40:1440:79:2840:-214.606,0,-94.067	0/1:30:7,23:7:252:23:805:-62.6744,0,-13.9981	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.625	0/1:28:6,22:6:216:22:792:-60.3701,0,-11.3617	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6457	0/1:204:101,103:101:3598:103:3657:-261.628,0,-262.588	0/1:135:78,57:78:2777:57:2029:-137.703,0,-209.508	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5548	0/0:173:173,0:173:6201:0:0:0,-52.0782,-558.18	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.894	0/1:67:28,39:28:1004:39:1400:-102.884,0,-70.5045	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:151:70,81:70:2512:81:2900:-210.118,0,-180.713	0/1:80:46,34:46:1648:34:1224:-82.8961,0,-124.522	0/1:37:20,17:20:720:17:608:-42.6574,0,-53.9907	.:.:.:.:.:.:.:.	0/1:76:30,46:30:1080:46:1644:-121.792,0,-74.635	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.085	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.36	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.847	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3128	0/1:79:23,56:23:828:56:1985:-148.319,0,-51.0379	0/1:60:24,35:24:860:35:1248:-91.7006,0,-59.5737	0/1:113:38,75:38:1352:75:2688:-201.628,0,-87.9616	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.45	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.321	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.042	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:86:86,0:86:3062:0:0:0,-25.8886,-275.78	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:18:3,15:3:108:15:532:-41.6857,0,-4.65663	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.581	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.458	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:193:192,1:192:6880:1:36:0,-54.5627,-615.706	0/1:119:41,77:41:1476:77:2745:-203.523,0,-97.2641	0/1:55:27,28:27:956:28:989:-70.5327,0,-69.7991	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7701	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.791	0/0:104:104,0:104:3725:0:0:0,-31.3071,-335.275	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:27:16,11:16:572:11:392:-26.8533,0,-43.6838	0/1:17:8,9:8:284:9:324:-23.6046,0,-20.7858	0/1:117:51,66:51:1828:66:2337:-170.102,0,-128.708	0/1:67:20,47:20:720:47:1678:-127.162,0,-44.8898	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.844	0/1:133:73,60:73:2601:60:2148:-148.769,0,-194.28	0/1:29:11,18:11:396:18:648:-48.6626,0,-27.2529	0/1:98:56,42:56:1993:42:1512:-103.959,0,-150.125	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.805	0/1:47:21,26:21:756:26:928:-67.9186,0,-54.2179	0/1:136:75,61:75:2692:61:2173:-148.639,0,-201.579	0/1:45:21,24:21:756:24:864:-62.4622,0,-54.8209	0/1:41:19,22:19:684:22:792:-57.2364,0,-49.5457	0/1:39:13,26:13:468:26:926:-69.6712,0,-30.7195	0/1:88:39,49:39:1400:49:1760:-127.595,0,-99.7992	0/1:14:6,8:6:216:8:288:-21.3672,0,-15.5761	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.76	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.739	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.973	0/1:110:58,51:58:2080:51:1832:-127.383,0,-154.297	0/1:50:17,33:17:608:33:1169:-87.1141,0,-39.9982	0/0:115:115,0:115:4113:0:0:0,-34.6184,-370.283	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.607
chr01	4218083	.	G	A	113495	PASS	AB=0.450118;ABP=94.4298;AC=145;AF=0.77957;AN=186;AO=5521;CIGAR=1X;DP=7854;DPB=7854;DPRA=85.3587;EPP=11991.7;EPPR=5058.2;GTI=5;LEN=1;MEANALT=1.04348;MQM=59.9761;MQMR=60;NS=93;NUMALT=1;ODDS=0.623437;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196649;QR=82655;RO=2328;RPL=0;RPP=11991.7;RPPR=5058.2;RPR=5521;RUN=1;SAF=0;SAP=11991.7;SAR=5521;SRF=0;SRP=5058.2;SRR=2328;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1599:-144.199,-13.5464,0	0/1:128:78,50:78:2780:50:1796:-123.39,0,-211.91	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	1/1:119:0,119:0:0:119:4232:-381.06,-35.8226,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:80:0,80:0:0:80:2852:-256.916,-24.0824,0	0/1:141:85,56:85:2995:56:1987:-136.659,0,-227.337	1/1:163:2,161:2:72:161:5671:-503.666,-42.2312,0	0/1:105:50,55:50:1784:55:1946:-143.807,0,-129.235	1/1:88:0,88:0:0:88:3140:-282.825,-26.4906,0	1/1:51:0,51:0:0:51:1817:-163.811,-15.3525,0	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0	0/1:46:26,20:26:915:20:697:-49.2033,0,-68.8182	1/1:72:0,72:0:0:72:2521:-227.14,-21.6742,0	0/1:33:19,14:19:680:14:495:-34.949,0,-51.5952	1/1:36:0,36:0:0:36:1267:-114.332,-10.8371,0	1/1:50:0,50:0:0:50:1773:-159.851,-15.0515,0	0/1:50:25,25:25:880:25:900:-66.2695,0,-64.4662	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:151:1,150:1:36:150:5329:-476.13,-41.8573,0	0/1:147:91,56:91:3240:56:2007:-136.647,0,-247.572	0/1:127:94,33:94:3317:33:1184:-68.6375,0,-260.517	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:117:63,54:63:2248:54:1928:-138.576,0,-167.363	1/1:46:0,46:0:0:46:1618:-145.908,-13.8474,0	0/1:298:167,131:167:5940:131:4674:-331.114,0,-445.003	0/1:140:60,78:60:2132:78:2796:-209.978,0,-150.244	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:165:0,165:0:0:165:5886:-529.849,-49.67,0	1/1:171:0,171:0:0:171:6109:-549.91,-51.4761,0	0/1:143:70,72:70:2464:72:2562:-187.723,0,-178.908	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	0/1:170:91,79:91:3248:79:2840:-204.663,0,-241.367	0/1:255:158,97:158:5611:97:3479:-236.558,0,-428.352	0/1:59:33,26:33:1162:26:936:-66.7987,0,-87.1245	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:125:61,64:61:2183:64:2277:-167.562,0,-159.107	1/1:21:0,21:0:0:21:728:-65.8377,-6.32163,0	1/1:217:0,217:0:0:217:7704:-693.258,-65.3235,0	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	1/1:43:0,43:0:0:43:1518:-136.912,-12.9443,0	1/1:76:0,76:0:0:76:2709:-244.052,-22.8783,0	1/1:121:0,120:0:0:120:4285:-385.598,-36.1236,0	0/1:210:113,97:113:4002:97:3476:-249.835,0,-297.153	0/1:128:70,58:70:2486:58:2067:-147.768,0,-185.458	0/1:140:78,62:78:2765:62:2228:-158.64,0,-206.947	1/1:142:0,142:0:0:142:5066:-456.082,-42.7463,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:95:0,95:0:0:95:3349:-301.626,-28.5979,0	1/1:40:0,40:0:0:40:1425:-128.545,-12.0412,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:100:0,100:0:0:100:3569:-321.418,-30.103,0	1/1:134:0,134:0:0:134:4788:-431.076,-40.338,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:161:1,160:1:36:160:5689:-508.532,-44.8676,0	0/1:209:114,95:114:4084:95:3381:-241.59,0,-304.83	0/1:97:58,39:58:2063:39:1392:-96.3791,0,-156.741	1/1:53:0,53:0:0:53:1880:-169.476,-15.9546,0	1/1:118:0,118:0:0:118:4228:-380.7,-35.5215,0	1/1:69:0,69:0:0:69:2434:-219.315,-20.7711,0	1/1:18:0,18:0:0:18:629:-56.9338,-5.41854,0	1/1:64:1,63:1:32:63:2238:-198.483,-16.0666,0	0/1:98:49,49:49:1752:49:1740:-127.383,0,-128.463	0/1:23:13,10:13:453:10:360:-25.8206,0,-34.1759	0/1:121:62,59:62:2190:59:2112:-153.924,0,-160.94	0/1:55:23,32:23:815:32:1152:-87.4335,0,-57.1141	1/1:109:0,109:0:0:109:3866:-348.134,-32.8123,0	0/1:118:67,51:67:2374:51:1800:-126.757,0,-178.396	0/1:108:51,57:51:1827:57:2031:-150.551,0,-132.199	0/1:115:68,46:68:2391:46:1635:-112.76,0,-180.769	1/1:8:0,8:0:0:8:276:-25.1752,-2.40824,0	1/1:94:0,94:0:0:94:3367:-303.246,-28.2968,0	0/1:87:49,38:49:1725:38:1356:-96.1503,0,-129.343	0/1:159:74,85:74:2638:85:3034:-225.426,0,-189.802	0/1:94:53,41:53:1896:41:1463:-103.668,0,-142.621	0/1:41:19,22:19:672:22:775:-57.729,0,-48.4646	0/1:63:34,29:34:1208:29:1040:-74.9495,0,-90.0612	0/1:111:57,54:57:2017:54:1915:-139.211,0,-148.387	0/1:29:12,17:12:432:17:608:-46.3222,0,-30.4913	1/1:62:0,62:0:0:62:2216:-199.698,-18.6639,0	1/1:43:0,43:0:0:43:1544:-139.245,-12.9443,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:79:41,38:41:1455:38:1355:-98.4683,0,-107.464	0/1:44:35,9:35:1223:9:311:-15.0784,0,-97.1248	1/1:70:0,70:0:0:70:2491:-224.443,-21.0721,0	1/1:63:0,63:0:0:63:2240:-201.864,-18.9649,0
chr01	4218248	.	T	A	135295	PASS	AB=0.482528;ABP=13.3298;AC=146;AF=0.784946;AN=186;AO=6369;CIGAR=1X;DP=8398;DPB=8398;DPRA=0;EPP=13772.4;EPPR=4372.03;GTI=2;LEN=1;MEANALT=1.08602;MQM=59.9921;MQMR=59.9955;NS=93;NUMALT=1;ODDS=0.478423;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227647;QR=72427;RO=2020;RPL=6362;RPP=13772.4;RPPR=4372.03;RPR=7;RUN=1;SAF=0;SAP=13833.1;SAR=6369;SRF=0;SRP=4389.38;SRR=2020;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:74:0,74:0:0:74:2632:-237.125,-22.2762,0	0/1:54:34,20:34:1216:20:720:-48.8732,0,-93.4909	1/1:176:0,176:0:0:176:6280:-565.293,-52.9813,0	1/1:182:1,181:1:36:181:6461:-577.977,-51.1892,0	1/1:54:0,54:0:0:54:1929:-173.885,-16.2556,0	1/1:48:0,48:0:0:48:1703:-153.555,-14.4494,0	0/1:80:36,44:36:1292:44:1576:-118.049,0,-92.5014	1/1:149:4,145:4:140:145:5187:-454.025,-31.9089,0	0/1:97:33,64:33:1176:64:2286:-176.802,0,-76.9479	1/1:65:1,64:1:36:64:2272:-201.142,-15.9687,0	1/1:106:0,106:0:0:106:3803:-342.466,-31.9092,0	1/1:142:0,142:0:0:142:5086:-457.883,-42.7463,0	0/1:90:37,53:37:1309:53:1903:-144.455,0,-91.0168	1/1:85:0,85:0:0:85:3024:-272.389,-25.5876,0	0/1:100:56,43:56:2008:43:1544:-109.091,0,-150.832	1/1:74:1,73:1:36:73:2610:-231.549,-18.6779,0	1/1:67:0,67:0:0:67:2395:-215.806,-20.169,0	0/1:50:23,27:23:824:27:968:-72.3859,0,-59.4318	1/1:55:0,55:0:0:55:1965:-177.125,-16.5567,0	1/1:98:0,98:0:0:98:3512:-316.287,-29.5009,0	0/1:175:93,82:93:3340:82:2914:-209.815,0,-248.136	0/1:48:37,11:37:1328:11:396:-21.5333,0,-105.373	1/1:84:1,83:1:36:83:2968:-263.755,-21.6882,0	0/1:60:29,31:29:1044:31:1112:-82.3295,0,-76.213	1/1:84:0,84:0:0:84:3024:-272.389,-25.2865,0	0/1:157:80,75:80:2845:75:2696:-195.864,0,-209.268	0/1:252:139,113:139:4992:113:4039:-287.838,0,-373.566	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:153:0,153:0:0:153:5492:-494.405,-46.0576,0	1/1:51:0,50:0:0:50:1779:-160.032,-15.0515,0	0/1:80:45,35:45:1608:35:1256:-89.2629,0,-120.928	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:235:123,112:123:4416:112:4012:-290.527,0,-326.869	0/1:57:18,39:18:644:39:1392:-108.42,0,-41.1319	0/1:90:44,45:44:1580:45:1612:-118.258,0,-115.379	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:128:66,62:66:2360:62:2208:-160.453,0,-174.127	1/1:47:0,47:0:0:47:1677:-151.216,-14.1484,0	1/1:135:0,135:0:0:135:4827:-434.585,-40.6391,0	1/1:76:0,76:0:0:76:2706:-243.783,-22.8783,0	1/1:77:0,77:0:0:77:2748:-247.563,-23.1793,0	1/1:102:0,102:0:0:102:3649:-328.613,-30.7051,0	1/1:113:0,113:0:0:113:4039:-363.698,-34.0164,0	0/1:134:74,60:74:2652:60:2148:-153.249,0,-198.588	0/1:59:43,16:43:1533:16:572:-34.0527,0,-120.498	0/1:116:59,57:59:2108:57:2031:-148.142,0,-155.07	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:129:0,129:0:0:129:4616:-415.602,-38.8329,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	.:.:.:.:.:.:.:.	1/1:146:1,145:1:36:145:5172:-462.023,-40.3521,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0	1/1:116:2,114:2:72:114:4074:-360.009,-28.0828,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:237:0,237:0:0:237:8436:-759.244,-71.3441,0	0/1:134:76,58:76:2732:58:2072:-146.41,0,-205.784	0/1:58:20,38:20:720:38:1364:-105.601,0,-47.669	1/1:90:0,90:0:0:90:3199:-288.129,-27.0927,0	1/1:156:1,155:1:36:155:5500:-491.531,-43.3624,0	1/1:130:1,129:1:36:129:4583:-409.037,-35.5356,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:70:0,70:0:0:70:2511:-226.241,-21.0721,0	0/1:72:42,29:42:1508:29:1031:-71.3698,0,-114.282	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/1:106:44,62:44:1584:62:2206:-166.895,0,-110.942	0/1:84:45,38:45:1620:38:1364:-97.7154,0,-120.745	1/1:158:0,158:0:0:158:5602:-504.304,-47.5627,0	0/1:128:69,59:69:2476:59:2116:-152.177,0,-184.562	0/1:150:77,73:77:2756:73:2593:-188.463,0,-203.124	0/1:74:31,43:31:1112:43:1540:-116.617,0,-78.1151	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:77:1,76:1:36:76:2724:-241.805,-19.581,0	0/1:84:48,36:48:1720:36:1288:-90.9371,0,-129.799	0/1:212:100,112:100:3584:112:3996:-296.012,0,-258.948	0/1:82:44,37:44:1584:37:1324:-94.7189,0,-118.108	0/1:79:44,35:44:1580:35:1260:-89.9241,0,-118.71	0/1:58:26,32:26:936:32:1143:-85.719,0,-67.0997	0/1:180:83,97:83:2988:97:3488:-259.858,0,-214.966	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	1/1:92:0,92:0:0:92:3291:-296.409,-27.6948,0	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:173:90,82:90:3232:82:2952:-213.776,0,-238.964	0/1:86:63,23:63:2264:23:828:-48.9555,0,-178.134	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	1/1:127:0,127:0:0:127:4546:-409.304,-38.2308,0
chr01	4357442	.	G	A	16224.8	PASS	AB=0.314146;ABP=1233.11;AC=57;AF=0.313187;AN=182;AO=1292;CIGAR=1X;DP=6076;DPB=6076;DPRA=1.24864;EPP=2808.55;EPPR=10387;GTI=5;LEN=1;MEANALT=1.0339;MQM=59.9791;MQMR=59.9983;NS=91;NUMALT=1;ODDS=2.90504;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46113;QR=170637;RO=4782;RPL=0;RPP=2808.55;RPPR=10387;RPR=1292;RUN=1;SAF=1292;SAP=2808.55;SAR=0;SRF=4782;SRP=10387;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:34,14:34:1212:14:500:-30.8867,0,-94.9369	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/0:110:110,0:110:3918:0:0:0,-33.1133,-352.811	0/0:155:155,0:155:5530:0:0:0,-46.6596,-497.824	0/1:23:10,13:10:356:13:453:-34.1759,0,-25.4576	0/1:35:26,9:26:932:9:324:-18.9698,0,-73.6628	0/0:34:34,0:34:1194:0:0:0,-10.235,-107.761	0/1:113:92,21:92:3274:21:741:-32.9952,0,-260.861	0/1:92:69,23:69:2464:23:824:-46.7886,0,-194.32	0/1:139:95,44:95:3374:44:1580:-100.648,0,-262.031	0/1:49:41,8:41:1472:8:288:-11.5169,0,-118.026	0/0:72:72,0:72:2577:0:0:0,-21.6742,-232.177	0/1:80:51,29:51:1817:29:1040:-69.832,0,-139.727	0/1:73:59,14:59:2108:14:500:-23.361,0,-168.014	0/1:71:46,25:46:1647:25:885:-58.5934,0,-127.145	0/1:43:30,13:30:1067:13:468:-29.5154,0,-83.3969	0/1:40:28,12:28:1000:12:432:-27.18,0,-78.2742	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/1:19:15,4:15:536:4:144:-7.59405,0,-42.8552	0/1:83:55,28:55:1949:28:1004:-65.6904,0,-150.699	0/1:117:72,44:72:2580:44:1542:-103.788,0,-197.17	0/1:46:23,23:23:828:23:828:-60.9967,0,-60.9967	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:27:12,15:12:432:15:525:-39.4502,0,-31.0934	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:186:133,53:133:4722:53:1881:-113.575,0,-369.148	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.584	0/1:40:30,10:30:1076:10:356:-20.34,0,-85.1117	0/1:167:110,57:110:3937:57:2052:-134.679,0,-304.248	0/1:107:77,30:77:2744:30:1061:-63.5892,0,-214.993	0/1:78:47,31:47:1673:31:1116:-77.2714,0,-127.375	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	.:.:.:.:.:.:.:.	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:184:123,61:123:4419:61:2196:-142.516,0,-342.49	0/1:86:60,26:60:2141:26:917:-56.956,0,-167.067	0/1:36:24,12:24:860:12:428:-28.0217,0,-66.8848	.:.:.:.:.:.:.:.	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.24	0/1:36:28,8:28:1008:8:273:-14.0631,0,-80.1993	0/1:60:42,18:42:1477:18:644:-40.2288,0,-115.161	0/1:67:42,25:42:1493:25:885:-59.7975,0,-114.494	0/1:72:47,25:47:1677:25:900:-59.6469,0,-129.541	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.502	0/0:66:66,0:66:2323:0:0:0,-19.868,-209.326	0/0:71:69,2:69:2461:2:72:0,-14.5364,-214.906	0/1:62:34,28:34:1220:28:1004:-72.012,0,-91.4429	0/1:108:60,48:60:2160:48:1705:-121.223,0,-162.155	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:65:63,2:63:2264:2:72:0,-12.7302,-197.186	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:111:91,20:91:3253:20:720:-31.7144,0,-259.575	0/1:30:21,9:21:756:9:324:-20.475,0,-59.3363	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:71:48,23:48:1694:23:828:-53.471,0,-131.369	0/1:119:87,32:87:3128:32:1148:-67.8073,0,-245.923	.:.:.:.:.:.:.:.	0/1:193:151,42:151:5385:42:1508:-77.9158,0,-426.683	0/1:89:65,24:65:2336:24:864:-51.2909,0,-183.708	0/1:55:30,25:30:1080:25:892:-64.043,0,-80.9566	0/0:60:60,0:60:2081:0:0:0,-18.0618,-187.552	0/1:130:96,34:96:3410:34:1224:-71.3331,0,-267.979	0/1:97:70,27:70:2493:27:972:-58.598,0,-195.422	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:39:39,0:39:1374:0:0:0,-11.7402,-123.955	0/1:48:36,12:36:1292:12:432:-24.7718,0,-102.134	0/1:12:9,3:9:305:3:104:-6.09045,0,-24.1649	0/0:126:126,0:126:4471:0:0:0,-37.9298,-402.558	0/1:72:47,25:47:1677:25:866:-56.5772,0,-129.541	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:109:109,0:109:3920:0:0:0,-32.8123,-352.991	0/1:56:44,12:44:1580:12:432:-22.3635,0,-125.634	0/1:103:55,48:55:1965:48:1709:-123.088,0,-146.117	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:94:56,38:56:1986:38:1347:-93.0724,0,-150.714	0/0:116:116,0:116:4153:0:0:0,-34.9195,-373.951	0/1:61:46,15:46:1652:15:536:-30.212,0,-130.606	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/1:45:27,18:27:968:18:626:-43.1161,0,-73.891	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/1:22:16,6:16:572:6:216:-13.1679,0,-45.1908	0/1:87:63,24:63:2236:24:849:-50.5382,0,-175.312	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:90:65,25:65:2302:25:900:-54.2283,0,-180.345	0/1:71:41,29:41:1427:29:1040:-72.521,0,-107.327	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:99:99,0:99:3545:0:0:0,-29.802,-319.257
chr01	4357451	.	AGCATGGAG	AGCAAGGAG,AGCAAGGAC	131588	PASS	AB=0.746728,0.23903;ABP=1376.71,1539.87;AC=147,35;AF=0.807692,0.192308;AN=182;AO=5365,637;CIGAR=4M1X4M,4M1X3M1X;DP=6085;DPB=6084.89;DPRA=0,1.28637;EPP=11445.4,1377.57;EPPR=5.18177;GTI=5;LEN=1,9;MEANALT=2.1978,2.8;MQM=59.9946,59.9969;MQMR=60;NS=91;NUMALT=2;ODDS=1.12248;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=192414,22552;QR=36;RO=1;RPL=24,1;RPP=11445.4,1377.57;RPPR=5.18177;RPR=5341,636;RUN=1,1;SAF=5365,637;SAP=11653,1386.24;SAR=0,0;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49,0:0:0:49,0:1760,0:-158.684,-14.7505,0,-158.684,-14.7505,-158.684	1/2:24:0,18,5:0:0:18,5:644,180:-67.2477,-14.7287,-9.31012,-52.5596,0,-51.0545	1/1:112:0,112,0:0:0:112,0:4005,0:-360.638,-33.7154,0,-360.638,-33.7154,-360.638	1/1:155:0,153,0:0:0:153,0:5504,0:-495.133,-46.0576,0,-495.133,-46.0576,-495.133	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:34:0,34,0:0:0:34,0:1205,0:-108.754,-10.235,0,-108.754,-10.235,-108.754	1/2:34:0,22,11:0:0:22,11:792,394:-96.8323,-32.2038,-25.5811,-64.6996,0,-61.3882	1/1:112:0,110,0:0:0:110,0:3944,0:-354.792,-33.1133,0,-354.792,-33.1133,-354.792	1/2:95:0,77,18:0:0:77,18:2726,629:-273.569,-51.517,-28.3377,-222.402,0,-216.983	1/1:139:0,137,0:0:0:137,0:4912,0:-441.871,-41.2411,0,-441.871,-41.2411,-441.871	1/1:48:0,46,0:0:0:46,0:1656,0:-148.992,-13.8474,0,-148.992,-13.8474,-148.992	1/1:72:0,70,0:0:0:70,0:2520,0:-226.73,-21.0721,0,-226.73,-21.0721,-226.73	1/2:80:0,61,16:0:0:61,16:2188,565:-224.473,-46.0057,-27.6429,-178.462,0,-173.646	1/1:73:0,70,0:0:0:70,0:2520,0:-226.726,-21.0721,0,-226.726,-21.0721,-226.726	1/2:72:0,53,18:0:0:53,18:1908,648:-208.557,-52.8735,-36.9189,-155.683,0,-150.265	1/1:43:0,43,0:0:0:43,0:1548,0:-139.613,-12.9443,0,-139.613,-12.9443,-139.613	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/2:20:0,14,6:0:0:14,6:504,216:-59.1082,-17.9843,-13.7699,-41.4837,0,-39.6775	1/1:19:0,19,0:0:0:19,0:676,0:-61.168,-5.71957,0,-61.168,-5.71957,-61.168	1/1:85:0,84,1:0:0:84,1:3009,33:-270.709,-25.2865,0,-268.041,-22.2884,-267.74	1/2:117:0,104,12:0:0:104,12:3736,427:-339.573,-34.7965,-3.4894,-304.773,0,-301.16	1/2:46:0,36,10:0:0:36,10:1296,360:-135.481,-29.734,-18.8969,-106.107,0,-103.097	1/1:46:0,46,0:0:0:46,0:1652,0:-148.968,-13.8474,0,-148.968,-13.8474,-148.968	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/2:186:0,151,31:0:0:151,31:5401,1078:-528.057,-87.6429,-42.1874,-440.411,0,-431.079	1/2:94:0,73,20:0:0:73,20:2624,701:-271.112,-57.0331,-35.0579,-214.072,0,-208.051	1/1:40:0,39,0:0:0:39,0:1400,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/1:168:0,167,0:0:0:167,0:5958,0:-535.976,-50.272,0,-535.976,-50.272,-535.976	1/1:106:0,106,0:0:0:106,0:3812,0:-343.276,-31.9092,0,-343.276,-31.9092,-343.276	1/2:79:0,64,14:0:0:64,14:2304,494:-228.22,-40.2197,-20.9538,-187.995,0,-183.78	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:19:0,18,0:0:0:18,0:648,0:-58.2921,-5.41854,0,-58.2921,-5.41854,-58.2921	.:.:.:.:.:.:.:.	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:185:0,129,54:0:0:129,54:4644,1915:-534.941,-156.01,-117.178,-378.927,0,-362.671	1/1:87:0,82,5:0:0:82,5:2940,180:-264.474,-24.6845,0,-249.787,-9.63755,-248.282	1/2:37:0,25,12:0:0:25,12:896,429:-108.414,-35.3373,-27.8116,-73.4346,0,-69.8222	.:.:.:.:.:.:.:.	1/2:57:0,46,11:0:0:46,11:1641,383:-165.272,-31.4919,-17.6445,-134.129,0,-130.818	1/1:36:0,34,0:0:0:34,0:1224,0:-110.145,-10.235,0,-110.145,-10.235,-110.145	1/1:60:0,59,0:0:0:59,0:2120,0:-190.817,-17.7608,0,-190.817,-17.7608,-190.817	1/1:66:0,66,0:0:0:66,0:2368,0:-213.378,-19.868,0,-213.378,-19.868,-213.378	1/1:72:1,70,0:1:36:70,0:2512,0:-222.734,-18.1347,0,-223.035,-21.0721,-225.972	1/1:66:0,65,0:0:0:65,0:2336,0:-210.287,-19.567,0,-210.287,-19.567,-210.287	1/1:66:0,62,0:0:0:62,0:2194,0:-197.386,-18.6639,0,-197.386,-18.6639,-197.386	1/2:72:0,52,20:0:0:52,20:1872,697:-209.785,-57.0312,-41.3776,-153.106,0,-147.085	1/2:61:0,49,11:0:0:49,11:1764,390:-175.705,-31.768,-17.0175,-143.933,0,-140.622	1/2:109:0,85,24:0:0:85,24:3044,859:-318.652,-70.4072,-44.8196,-248.602,0,-241.377	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:65:0,65,0:0:0:65,0:2336,0:-210.499,-19.567,0,-210.499,-19.567,-210.499	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:17:0,17,0:0:0:17,0:604,0:-54.6906,-5.11751,0,-54.6906,-5.11751,-54.6906	1/1:112:0,110,0:0:0:110,0:3933,0:-353.801,-33.1133,0,-353.801,-33.1133,-353.801	1/1:29:0,24,0:0:0:24,0:860,0:-77.3623,-7.22472,0,-77.3623,-7.22472,-77.3623	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-1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chr01	4359236	.	T	A	13072.1	PASS	AB=0.491291;ABP=4.10712;AC=39;AF=0.214286;AN=182;AO=822;CIGAR=1X;DP=3497;DPB=3497;DPRA=1.50549;EPP=1787.96;EPPR=5811.7;GTI=1;LEN=1;MEANALT=1;MQM=46.2238;MQMR=59.9652;NS=91;NUMALT=1;ODDS=2.07786;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29360;QR=95819;RO=2675;RPL=0;RPP=1787.96;RPPR=5811.7;RPR=822;RUN=1;SAF=0;SAP=1787.96;SAR=822;SRF=0;SRP=5811.7;SRR=2675;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:69:34,35:34:1224:35:1248:-91.1312,0,-89.696	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.894	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:47:28,19:28:1004:19:680:-46.7198,0,-76.5275	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:16:8,8:8:288:8:288:-21.2696,0,-21.4509	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:31:16,15:16:567:15:536:-38.6981,0,-42.0288	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.538	0/1:26:14,12:14:500:12:428:-30.6037,0,-37.5094	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/1:30:13,17:13:464:17:608:-45.2588,0,-33.0666	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:52:31,21:31:1103:21:741:-50.8081,0,-83.9262	0/1:42:11,31:11:396:31:1097:-84.5433,0,-23.3395	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:48:32,16:32:1152:16:571:-36.6233,0,-89.5407	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/1:120:54,66:54:1927:66:2367:-174.365,0,-137.582	0/1:35:22,13:22:788:13:460:-30.8619,0,-60.7087	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:160:159,1:159:5661:1:36:0,-44.5665,-506.011	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:52:27,25:27:968:25:888:-63.7675,0,-71.7838	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.57343,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/1:99:53,46:53:1892:46:1648:-116.335,0,-140.753	0/1:63:23,40:23:824:40:1423:-107.045,0,-55.5184	0/1:15:9,6:9:324:6:216:-15.1384,0,-24.9904	.:.:.:.:.:.:.:.	0/1:42:29,13:29:1040:13:464:-29.1203,0,-81.2711	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:51:24,27:24:860:27:968:-71.1457,0,-62.3693	0/1:25:15,10:15:536:10:360:-24.4064,0,-41.0491	0/1:39:22,17:22:788:17:597:-41.74,0,-59.4964	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:8:2,6:2:72:6:212:-16.7789,0,-4.42848	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:93:92,1:92:3291:1:36:0,-24.4372,-292.85	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:75:33,42:33:1184:42:1503:-111.515,0,-84.2911	0/1:19:13,6:13:468:6:216:-13.8979,0,-36.7401	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.451	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:92:59,33:59:2116:33:1178:-76.6145,0,-163.014	0/0:13:12,1:12:428:1:36:0,-0.354773,-35.3002	0/1:26:12,14:12:428:14:504:-37.4717,0,-31.032	0/1:20:14,6:14:504:6:216:-13.6333,0,-39.6775	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:58:37,21:37:1328:21:756:-49.6979,0,-102.362	0/1:33:12,21:12:428:21:756:-57.9613,0,-28.9248	0/1:30:16,14:16:576:14:504:-36.3517,0,-43.1441	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.559	0/1:60:23,37:23:828:37:1309:-98.1252,0,-56.7823	0/1:57:36,21:36:1288:21:748:-49.8031,0,-99.0649	0/1:67:31,36:31:1107:36:1288:-93.8922,0,-79.7711	0/1:26:11,15:11:396:15:536:-40.0527,0,-28.156	0/1:28:15,13:15:540:13:468:-33.5628,0,-40.5077	0/1:67:31,36:31:1108:36:1282:-94.054,0,-79.862	0/1:21:12,9:12:432:9:324:-22.9805,0,-32.8996	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/1:51:19,32:19:684:32:1148:-87.1099,0,-46.5378	0/1:25:6,19:6:216:19:680:-53.3425,0,-12.2648	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613
chr01	4359248	.	GGTAT	AGTAT,AGTAC	75637.5	PASS	AB=0.499109,0.495544;ABP=3.02191,3.3006;AC=143,39;AF=0.785714,0.214286;AN=182;AO=2671,838;CIGAR=1X4M,1X3M1X;DP=3522;DPB=3522;DPRA=39.1222,1.32348;EPP=5751.01,1805.37;EPPR=11.6962;GTI=1;LEN=1,5;MEANALT=1.54444,2.12195;MQM=59.9805,46.2315;MQMR=60;NS=91;NUMALT=2;ODDS=1.63438;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=95620,29732;QR=139;RO=4;RPL=6,2;RPP=5751.01,1805.37;RPPR=11.6962;RPR=2665,836;RUN=1,1;SAF=0,0;SAP=5803.01,1822.7;SAR=2671,838;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:70:1,33,35:1:36:33,35:1184,1248:-194.338,-98.0608,-91.0643,-93.6371,0,-86.0385	1/1:36:0,36,0:0:0:36,0:1296,0:-116.944,-10.8371,0,-116.944,-10.8371,-116.944	1/1:70:0,70,0:0:0:70,0:2501,0:-225.34,-21.0721,0,-225.34,-21.0721,-225.34	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/2:48:0,29,19:0:0:29,19:1040,676:-139.632,-54.8016,-46.0717,-85.1845,0,-79.4649	1/1:46:0,46,0:0:0:46,0:1656,0:-149.328,-13.8474,0,-149.328,-13.8474,-149.328	1/2:17:0,8,9:0:0:8,9:288,305:-48.4129,-24.9027,-22.4945,-23.8592,0,-21.1499	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/1:27:0,27,0:0:0:27,0:951,0:-85.903,-8.12781,0,-85.903,-8.12781,-85.903	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/2:30:0,15,15:0:0:15,15:540,535:-87.412,-43.3468,-38.8313,-44.4211,0,-39.9056	1/1:64:0,63,0:0:0:63,0:2231,0:-200.798,-18.9649,0,-200.798,-18.9649,-200.798	1/2:26:0,14,12:0:0:14,12:500,417:-74.6253,-33.8534,-29.639,-41.1218,0,-37.5094	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/1:43:0,43,0:0:0:43,0:1527,0:-137.722,-12.9443,0,-137.722,-12.9443,-137.722	1/2:32:0,13,19:0:0:13,19:468,652:-90.8816,-52.687,-48.7736,-38.5463,0,-32.8267	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:48:0,48,0:0:0:48,0:1724,0:-155.445,-14.4494,0,-155.445,-14.4494,-155.445	1/2:53:0,32,21:0:0:32,21:1152,753:-155.213,-61.2135,-51.5805,-94.3572,0,-88.0356	1/2:44:1,11,32:1:31:11,32:396,1126:-119.007,-86.9928,-86.1689,-29.873,0,-22.7244	1/1:13:0,13,0:0:0:13,0:455,0:-41.282,-3.91339,0,-41.282,-3.91339,-41.282	1/2:47:0,31,16:0:0:31,16:1112,574:-137.186,-46.4816,-37.1497,-91.0594,0,-86.2429	1/1:16:1,15,0:1:36:15,0:531,0:-44.5236,-1.21821,0,-44.8247,-4.51545,-47.7625	1/2:121:0,53,67:0:0:53,67:1891,2372:-344.775,-190.615,-174.66,-154.222,0,-134.053	1/2:36:1,22,13:1:36:22,13:788,463:-98.4169,-34.4507,-30.7659,-61.3249,0,-60.349	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/1:163:0,163,0:0:0:163,0:5825,0:-524.36,-49.0679,0,-524.36,-49.0679,-524.36	1/1:57:0,57,0:0:0:57,0:2033,0:-183.241,-17.1587,0,-183.241,-17.1587,-183.241	1/2:51:0,26,25:0:0:26,25:932,879:-147.132,-71.1133,-63.2865,-76.3721,0,-68.8463	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	.:.:.:.:.:.:.:.	2/2:1:0,0,1:0:0:0,1:0,36:-3.57343,-3.57343,-3.57343,-0.30103,-0.30103,0	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	.:.:.:.:.:.:.:.	1/2:99:0,53,46:0:0:53,46:1896,1634:-285.682,-131.073,-115.119,-154.962,0,-141.115	1/2:63:0,22,41:0:0:22,41:792,1452:-180.989,-116.362,-109.739,-64.983,0,-52.6408	1/2:15:0,9,6:0:0:9,6:324,216:-44.286,-17.8477,-15.1384,-26.7966,0,-24.9904	.:.:.:.:.:.:.:.	1/2:42:0,29,13:0:0:29,13:1040,454:-121.82,-36.9853,-28.2554,-85.1845,0,-81.2711	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/1:43:0,43,0:0:0:43,0:1540,0:-138.893,-12.9443,0,-138.893,-12.9443,-138.893	1/1:23:0,23,0:0:0:23,0:819,0:-74.0316,-6.92369,0,-74.0316,-6.92369,-74.0316	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9144,-8.72987,0,-93.9144,-8.72987,-93.9144	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:26:0,26,0:0:0:26,0:927,0:-83.7474,-7.82678,0,-83.7474,-7.82678,-83.7474	1/2:54:0,23,30:0:0:23,30:828,1065:-153.404,-85.8389,-78.9152,-67.6084,0,-58.5775	1/2:25:0,15,10:0:0:15,10:531,352:-71.7651,-28.5079,-23.9925,-43.6065,0,-40.5962	1/2:39:0,22,17:0:0:22,17:788,606:-113.428,-49.1694,-42.5467,-64.6139,0,-59.4964	1/1:61:0,61,0:0:0:61,0:2164,0:-195.025,-18.3628,0,-195.025,-18.3628,-195.025	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:62:0,62,0:0:0:62,0:2224,0:-200.424,-18.6639,0,-200.424,-18.6639,-200.424	1/1:57:0,57,0:0:0:57,0:2052,0:-184.951,-17.1587,0,-184.951,-17.1587,-184.951	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:53:0,53,0:0:0:53,0:1908,0:-171.998,-15.9546,0,-171.998,-15.9546,-171.998	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:9:0,2,6:0:0:2,6:72,210:-22.8049,-16.9245,-16.3224,-5.93517,0,-4.12899	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:92:0,91,1:0:0:91,1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chr01	4361349	.	C	A	18124.2	PASS	AB=0.51582;ABP=7.54478;AC=38;AF=0.204301;AN=186;AO=1082;CIGAR=1X;DP=4312;DPB=4312;DPRA=1.44493;EPP=2352.54;EPPR=7014.69;GTI=4;LEN=1;MEANALT=1.02381;MQM=60;MQMR=59.9975;NS=93;NUMALT=1;ODDS=0.491038;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38766;QR=115498;RO=3229;RPL=1082;RPP=2352.54;RPPR=5907.05;RPR=0;RUN=1;SAF=0;SAP=2352.54;SAR=1082;SRF=133;SRP=5907.05;SRR=3096;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:56:30,26:30:1076:26:936:-67.7018,0,-80.2952	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:83:83,0:83:2973:0:0:0,-24.9855,-267.801	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:54:26,28:26:920:28:1000:-74.0598,0,-66.8614	0/0:65:63,2:63:2237:2:72:0,-12.7302,-194.756	0/1:53:23,30:23:824:30:1076:-81.1983,0,-58.5287	0/0:74:74,0:74:2626:0:0:0,-22.2762,-236.585	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:63:34,29:34:1220:29:1044:-75.3099,0,-91.1419	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:61:27,34:27:972:34:1205:-90.3911,0,-69.4327	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:79:37,42:37:1332:42:1512:-112.593,0,-96.401	0/1:18:10,8:10:356:8:284:-20.4848,0,-26.9627	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:45:22,23:22:792:23:828:-61.2978,0,-58.0593	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4891	0/1:72:39,33:39:1400:33:1176:-84.4736,0,-104.625	0/1:81:38,43:38:1352:43:1532:-113.789,0,-97.5969	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/0:110:110,0:110:3918:0:0:0,-33.1133,-352.811	0/0:33:33,0:33:1131:0:0:0,-9.93399,-102.089	0/1:57:26,31:26:932:31:1116:-83.593,0,-67.0402	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:141:56,85:56:1982:85:3052:-232.464,0,-136.206	0/1:34:24,10:24:864:10:360:-22.5093,0,-67.8475	0/1:56:39,17:39:1400:17:608:-38.1943,0,-109.442	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:36:19,17:19:680:17:602:-43.6719,0,-50.6921	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.044	0/1:57:28,29:28:1004:29:1036:-76.3952,0,-73.5172	0/1:28:11,17:11:392:17:597:-45.6273,0,-27.1912	0/1:60:24,36:24:860:36:1292:-98.522,0,-59.66	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:47:47,0:47:1677:0:0:0,-14.1484,-151.215	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9338	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07869	0/1:11:2,9:2:68:9:324:-26.1945,0,-3.14638	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:61:60,1:60:2148:1:36:0,-14.7646,-189.989	.:.:.:.:.:.:.:.	0/0:123:123,0:123:4412:0:0:0,-37.0267,-397.251	0/1:51:28,23:28:1008:23:824:-59.1308,0,-75.6838	0/1:43:21,22:21:741:22:788:-58.3005,0,-54.0673	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:47:46,1:46:1644:1:36:0,-10.5501,-144.65	0/0:84:82,2:82:2932:2:72:0,-18.4498,-257.278	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.871	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:37:14,23:14:504:23:828:-63.706,0,-34.56	0/1:13:11,2:11:396:2:68:-2.54432,0,-32.0694	0/1:48:25,22:25:896:22:781:-56.1041,0,-66.4522	0/1:94:40,54:40:1432:54:1937:-146.31,0,-100.881	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:108:58,50:58:2080:50:1800:-129.771,0,-154.959	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:99:41,58:41:1449:58:2080:-157.668,0,-100.902	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	0/1:69:32,37:32:1152:37:1324:-98.691,0,-83.2191	0/1:52:20,32:20:705:32:1152:-88.3366,0,-48.1192	0/1:61:31,30:31:1116:30:1080:-79.1504,0,-82.3889	0/1:50:20,30:20:720:30:1080:-82.4618,0,-50.0773	0/1:118:61,57:61:2192:57:2032:-147.631,0,-162.024	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:37:22,15:22:792:15:532:-37.075,0,-60.4676	0/1:47:19,28:19:680:28:1008:-76.8879,0,-47.3808	0/0:98:98,0:98:3501:0:0:0,-29.5009,-315.299	0/0:94:94,0:94:3384:0:0:0,-28.2968,-304.774
chr01	4424792	.	T	A	146791	PASS	AB=0.46686;ABP=49.0664;AC=148;AF=0.787234;AN=188;AO=6998;CIGAR=1X;DP=9588;DPB=9588;DPRA=25.7634;EPP=15190.3;EPPR=5609.76;GTI=6;LEN=1;MEANALT=1.03226;MQM=59.9094;MQMR=59.6156;NS=94;NUMALT=1;ODDS=0.632847;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250540;QR=92245;RO=2586;RPL=1;RPP=15190.3;RPPR=5609.76;RPR=6997;RUN=1;SAF=0;SAP=15199;SAR=6998;SRF=0;SRP=5618.44;SRR=2586;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:60:0,60:0:0:60:2137:-192.57,-18.0618,0	0/1:90:47,43:47:1662:43:1529:-110.809,0,-122.487	1/1:287:0,287:0:0:287:10295:-926.469,-86.3956,0	1/1:242:0,242:0:0:242:8619:-775.704,-72.8493,0	1/1:25:1,24:1:36:24:864:-74.4809,-3.92748,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:111:51,60:51:1836:60:2152:-160.532,0,-132.097	1/1:108:1,107:1:36:107:3827:-341.028,-28.913,0	0/1:179:69,108:69:2476:108:3881:-295.842,0,-169.4	1/1:118:1,117:1:36:117:4204:-374.941,-31.9233,0	1/1:54:0,54:0:0:54:1931:-174.052,-16.2556,0	1/1:137:0,137:0:0:137:4873:-438.721,-41.2411,0	0/1:128:69,59:69:2461:59:2113:-151.907,0,-183.17	1/1:61:1,60:1:36:60:2144:-189.621,-14.7646,0	0/1:105:49,56:49:1760:56:2016:-150.105,0,-127.049	1/1:68:0,68:0:0:68:2416:-217.684,-20.47,0	1/1:46:0,46:0:0:46:1643:-148.158,-13.8474,0	0/1:59:25,34:25:900:34:1224:-92.7063,0,-63.5512	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:149:0,149:0:0:149:5352:-481.724,-44.8535,0	0/1:179:86,93:86:3054:93:3323:-245.403,0,-221.167	0/1:200:148,52:148:5301:52:1872:-108.553,0,-416.731	1/1:103:0,103:0:0:103:3681:-331.063,-31.0061,0	0/1:100:58,42:58:2072:42:1512:-106.272,0,-156.639	1/1:98:0,98:0:0:98:3520:-317.009,-29.5009,0	0/1:248:129,119:129:4564:119:4255:-308.467,0,-336.26	0/1:345:165,180:165:5887:180:6434:-474.802,0,-426.053	1/1:63:0,63:0:0:63:2237:-200.654,-18.9649,0	1/1:168:0,168:0:0:168:5987:-538.935,-50.573,0	1/1:91:1,90:1:36:90:3221:-286.513,-23.7955,0	0/1:85:34,51:34:1224:51:1832:-139.573,0,-84.8691	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:278:127,151:127:4568:151:5413:-403.401,0,-327.561	0/1:145:108,37:108:3839:37:1332:-76.533,0,-302.007	0/1:62:32,30:32:1144:30:1067:-77.6324,0,-84.5982	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:116:50,66:50:1800:66:2348:-176.657,0,-127.044	1/1:40:0,40:0:0:40:1431:-129.087,-12.0412,0	1/1:139:0,139:0:0:139:4983:-448.487,-41.8432,0	1/1:74:0,74:0:0:74:2636:-237.484,-22.2762,0	1/1:64:0,64:0:0:64:2278:-205.281,-19.2659,0	1/1:162:0,162:0:0:162:5816:-523.551,-48.7669,0	1/1:95:0,95:0:0:95:3388:-305.134,-28.5979,0	0/1:223:137,86:137:4837:86:3087:-210.927,0,-367.87	0/1:136:86,50:86:3069:50:1794:-120.532,0,-235.47	0/1:83:45,38:45:1590:38:1360:-97.7151,0,-118.394	1/1:136:1,135:1:36:135:4843:-432.416,-37.3418,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:130:0,130:0:0:130:4664:-419.916,-39.1339,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:125:0,125:0:0:125:4463:-401.834,-37.6288,0	1/1:72:0,72:0:0:72:2573:-231.187,-21.6742,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:95:0,95:0:0:95:3387:-305.028,-28.5979,0	1/1:105:2,103:2:72:103:3708:-327.079,-24.7739,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:208:1,207:1:21:207:7422:-665.921,-60.5143,0	0/1:173:105,68:105:3761:68:2436:-167.416,0,-286.566	0/1:66:33,33:33:1188:33:1171:-85.8287,0,-87.3606	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:142:1,141:1:36:141:5039:-449.675,-39.148,0	1/1:177:2,175:2:72:175:6260:-556.726,-46.519,0	1/1:34:0,34:0:0:34:1203:-108.575,-10.235,0	1/1:36:0,36:0:0:36:1285:-115.953,-10.8371,0	0/1:63:28,35:28:993:35:1257:-94.4682,0,-70.7158	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.2266	0/1:145:87,58:87:3113:58:2069:-142.825,0,-236.708	0/1:130:67,63:67:2400:63:2260:-164.529,0,-177.098	1/1:97:0,97:0:0:97:3488:-314.13,-29.1999,0	0/1:178:90,88:90:3225:88:3160:-231.041,0,-236.51	0/1:96:67,29:67:2363:29:1044:-65.3759,0,-183.999	0/1:113:47,66:47:1665:66:2376:-180.081,0,-116.111	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:131:0,131:0:0:131:4689:-422.136,-39.4349,0	0/1:164:112,51:112:3948:51:1825:-115.104,0,-306.006	0/1:216:111,105:111:3988:105:3773:-274.737,0,-294.077	0/1:74:33,41:33:1188:41:1476:-110.86,0,-84.9453	0/1:98:51,46:51:1813:46:1656:-119.766,0,-133.889	0/1:76:40,36:40:1440:36:1292:-93.7055,0,-107.017	0/1:172:84,88:84:2974:88:3160:-232.847,0,-216.076	0/1:21:6,15:6:216:15:536:-42.2532,0,-13.4689	1/1:111:0,111:0:0:111:3959:-356.499,-33.4143,0	1/1:99:0,99:0:0:99:3544:-318.043,-29.802,0	1/1:46:0,46:0:0:46:1629:-146.892,-13.8474,0	0/1:71:37,34:37:1332:34:1218:-88.5533,0,-98.8023	0/1:84:46,38:46:1641:38:1356:-97.0526,0,-122.685	1/1:158:0,158:0:0:158:5680:-511.18,-47.5627,0	1/1:141:0,141:0:0:141:5064:-455.903,-42.4452,0
chr01	4424815	.	A	G	44717.4	PASS	AB=0.532566;ABP=47.8447;AC=40;AF=0.212766;AN=188;AO=2607;CIGAR=1X;DP=9670;DPB=9670;DPRA=1.4657;EPP=5655.36;EPPR=15214.4;GTI=8;LEN=1;MEANALT=1.10417;MQM=59.5911;MQMR=59.9161;NS=94;NUMALT=1;ODDS=0.799354;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93254;QR=252936;RO=7057;RPL=2606;RPP=5655.36;RPPR=15214.4;RPR=1;RUN=1;SAF=0;SAP=5664.04;SAR=2607;SRF=0;SRP=15327.1;SRR=7057;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:88:42,46:42:1496:46:1647:-121.788,0,-108.444	0/0:293:293,0:293:10491:0:0:0,-88.2018,-944.106	0/0:241:241,0:241:8660:0:0:0,-72.5482,-779.388	0/0:24:23,1:23:824:1:36:0,-3.62644,-70.8837	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:109:59,50:59:2120:50:1790:-128.562,0,-158.256	0/0:111:110,1:110:3948:1:36:0,-29.8161,-351.912	0/1:184:112,72:112:4016:72:2572:-176.285,0,-306.239	0/0:123:122,1:122:4346:1:36:0,-33.4284,-387.629	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.109	0/0:139:139,0:139:4983:0:0:0,-41.8432,-448.612	0/1:128:59,68:59:2107:68:2448:-181.943,0,-151.308	0/0:62:61,1:61:2188:1:36:0,-15.0656,-193.587	0/1:104:55,49:55:1980:49:1746:-126.102,0,-147.167	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:60:35,25:35:1260:25:900:-63.2501,0,-95.6437	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:154:154,0:154:5497:0:0:0,-46.3586,-494.771	0/1:182:94,88:94:3372:88:3160:-229.801,0,-248.903	0/1:198:52,146:52:1872:146:5215:-409.603,0,-109.155	0/0:103:103,0:103:3675:0:0:0,-31.0061,-329.765	0/1:100:42,58:42:1504:58:2066:-155.915,0,-105.552	0/0:98:98,0:98:3507:0:0:0,-29.5009,-315.84	0/1:250:119,131:119:4265:131:4680:-346.095,0,-308.766	0/1:348:180,167:180:6447:167:5981:-433.642,0,-475.592	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.413	0/0:170:170,0:170:6096:0:0:0,-51.1751,-548.469	0/0:91:90,1:90:3219:1:36:0,-23.7955,-286.334	0/1:82:50,32:50:1796:32:1140:-78.2158,0,-136.867	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:285:154,131:154:5527:131:4695:-336.88,0,-411.56	0/1:147:37,110:37:1317:110:3931:-309.691,0,-74.5784	0/1:61:29,32:29:1036:32:1152:-85.6101,0,-75.1461	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:120:67,53:67:2404:53:1888:-133.755,0,-180.493	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/0:141:141,0:141:5038:0:0:0,-42.4452,-453.547	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.643	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:161:161,0:161:5780:0:0:0,-48.4658,-520.313	0/0:97:97,0:97:3460:0:0:0,-29.1999,-311.611	0/1:229:86,143:86:3088:143:5116:-391.347,0,-209.211	0/1:136:49,87:49:1743:87:3116:-239.695,0,-115.944	0/1:84:39,45:39:1404:45:1597:-118.725,0,-101.373	0/0:134:133,1:133:4768:1:36:0,-36.7397,-425.67	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:131:131,0:131:4708:0:0:0,-39.4349,-423.866	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:124:124,0:124:4441:0:0:0,-37.3277,-399.853	0/0:74:74,0:74:2656:0:0:0,-22.2762,-238.652	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.922	0/0:110:108,2:108:3880:2:72:0,-26.279,-342.553	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:213:213,0:213:7611:0:0:0,-64.1194,-685.017	0/1:177:70,106:70:2503:106:3795:-288.364,0,-172.181	0/1:65:32,33:32:1148:33:1180:-86.9411,0,-84.0629	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:141:140,1:140:5024:1:36:0,-38.847,-448.575	0/0:180:178,2:178:6372:2:61:0,-48.3985,-567.776	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.059	0/1:62:34,28:34:1224:28:1004:-72.0102,0,-91.8008	0/1:13:4,9:4:144:9:320:-25.2266,0,-9.40023	0/1:143:58,85:58:2076:85:3035:-230.287,0,-144.063	0/1:134:65,69:65:2327:69:2436:-179.14,0,-169.351	0/0:98:98,0:98:3519:0:0:0,-29.5009,-316.918	0/1:177:87,88:87:3124:88:3158:-231.266,0,-228.346	0/1:97:29,67:29:1044:67:2408:-187.666,0,-65.0161	0/1:112:65,47:65:2321:47:1692:-118.843,0,-175.433	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:131:131,0:131:4708:0:0:0,-39.4349,-423.849	0/1:163:51,112:51:1824:112:4006:-311.582,0,-115.373	0/1:219:111,108:111:3968:108:3847:-280.497,0,-291.369	0/1:76:43,33:43:1540:33:1184:-83.983,0,-116.015	0/1:97:46,51:46:1656:51:1836:-136.316,0,-120.126	0/1:77:36,41:36:1288:41:1465:-108.963,0,-93.0443	0/1:175:89,86:89:3196:86:3079:-224.62,0,-235.182	0/1:23:15,8:15:540:8:288:-19.3355,0,-42.0128	0/0:113:113,0:113:4068:0:0:0,-34.0164,-366.303	0/0:100:100,0:100:3588:0:0:0,-30.103,-322.001	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.888	0/1:73:34,39:34:1220:39:1400:-104.312,0,-88.1316	0/1:86:39,47:39:1395:47:1680:-125.593,0,-99.9598	0/0:161:161,0:161:5792:0:0:0,-48.4658,-521.255	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946
chr01	4446740	.	A	C	24163	PASS	AB=0.426757;ABP=175.416;AC=39;AF=0.207447;AN=188;AO=1589;CIGAR=1X;DP=8231;DPB=8231;DPRA=1.21218;EPP=3453.48;EPPR=14421.6;GTI=1;LEN=1;MEANALT=1.02222;MQM=49.8005;MQMR=58.2578;NS=94;NUMALT=1;ODDS=0.255892;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56211;QR=236528;RO=6640;RPL=1586;RPP=3427.47;RPPR=14360.8;RPR=3;RUN=1;SAF=1586;SAP=3427.47;SAR=3;SRF=6633;SRP=14360.8;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4295	0/1:124:69,55:69:2464:55:1961:-138.631,0,-184.594	0/0:173:173,0:173:6147:0:0:0,-52.0782,-551.986	0/0:213:213,0:213:7611:0:0:0,-64.1194,-684.305	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.105	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.6371	0/1:174:93,81:93:3324:81:2873:-204.673,0,-246.758	0/0:116:116,0:116:4140:0:0:0,-34.9195,-371.635	0/1:70:35,35:35:1243:35:1224:-88.8998,0,-91.0726	0/0:127:126,0:126:4500:0:0:0,-37.9298,-404.624	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.263	0/0:83:80,3:80:2867:3:108:0,-14.9356,-248.189	0/1:46:24,22:24:860:22:788:-57.0946,0,-63.8563	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.212	0/1:39:15,24:15:540:24:840:-63.8733,0,-37.1685	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.627	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.315	0/1:32:21,11:21:743:11:396:-26.076,0,-57.5548	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.968	0/0:205:202,3:202:7171:3:104:0,-52.0425,-634.995	0/1:154:103,51:103:3671:51:1778:-112.064,0,-282.745	0/1:90:29,61:29:1036:61:2163:-166.839,0,-66.4341	0/0:64:64,0:64:2300:0:0:0,-19.2659,-205.974	0/1:125:67,57:67:2365:57:2039:-144.169,0,-175.242	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.54	0/1:229:146,83:146:5172:83:2932:-192.305,0,-395.766	0/1:137:93,44:93:3316:44:1528:-95.8344,0,-257.336	0/0:31:31,0:31:1087:0:0:0,-9.33193,-98.1179	0/0:310:310,0:310:11019:0:0:0,-93.3193,-988.627	0/0:97:96,1:96:3412:1:36:0,-25.6134,-303.283	0/1:126:58,68:58:2075:68:2419:-177.276,0,-148.995	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3073	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9094	0/1:2:1,1:1:36:1:36:-2.98717,0,-2.99621	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59783	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1603	0/1:158:98,60:98:3507:60:2125:-142.461,0,-267.624	0/1:96:54,42:54:1923:42:1462:-101.651,0,-144.402	0/1:50:34,16:34:1220:16:564:-35.6554,0,-95.048	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83414	0/1:134:77,57:77:2756:57:2035:-142.273,0,-207.577	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.628	0/0:113:113,0:113:4028:0:0:0,-34.0164,-362.473	0/0:88:88,0:88:3128:0:0:0,-26.4906,-281.101	0/0:65:65,0:65:2307:0:0:0,-19.5669,-207.548	0/0:121:121,0:121:4344:0:0:0,-36.4246,-390.977	0/0:102:102,0:102:3617:0:0:0,-30.7051,-324.753	0/1:128:64,64:64:2279:64:2263:-162.868,0,-166.593	0/1:133:71,62:71:2530:62:2182:-154.999,0,-186.469	0/1:83:48,35:48:1728:35:1239:-86.4112,0,-130.372	0/0:220:220,0:220:7847:0:0:0,-66.2266,-705.955	0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6684	0/0:164:164,0:164:5811:0:0:0,-49.3689,-522.595	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.767	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6791	0/0:110:110,0:110:3915:0:0:0,-33.1133,-352.435	0/0:57:57,0:57:2023:0:0:0,-17.1587,-182.186	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.2216	0/1:5:3,2:3:108:2:63:-4.45709,0,-8.51013	0/0:52:52,0:52:1855:0:0:0,-15.6536,-166.896	0/0:113:112,1:112:4004:1:36:0,-30.4333,-356.681	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83426	0/0:136:136,0:136:4856:0:0:0,-40.9401,-436.996	0/1:146:90,56:90:3212:56:1970:-132.914,0,-245.173	0/1:76:41,35:41:1464:35:1247:-89.3009,0,-109.151	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.977	0/0:177:177,0:177:6278:0:0:0,-53.2823,-563.105	0/0:62:61,1:61:2172:1:32:0,-15.4707,-192.441	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5178	0/0:86:86,0:86:3032:0:0:0,-25.8886,-272.86	0/1:49:26,23:26:932:23:815:-57.4153,0,-69.3709	0/1:21:12,9:12:428:9:324:-22.8435,0,-32.4417	0/1:88:43,45:43:1524:45:1607:-117.698,0,-109.714	0/1:50:31,19:31:1100:19:676:-45.8866,0,-84.2371	0/0:169:169,0:169:6035:0:0:0,-50.8741,-541.356	0/1:140:88,52:88:3156:52:1846:-123.355,0,-241.586	0/1:73:45,28:45:1603:28:972:-65.099,0,-122.556	0/1:76:48,28:48:1724:28:955:-63.1739,0,-132.537	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.286	0/0:80:80,0:80:2845:0:0:0,-24.0824,-256.212	0/1:110:66,44:66:2331:44:1557:-106.957,0,-174.563	0/1:228:146,82:146:5186:82:2931:-194.098,0,-397.54	0/1:75:46,29:46:1652:29:1009:-68.195,0,-126.309	0/1:68:33,35:33:1176:35:1239:-90.9022,0,-85.5826	0/1:72:46,26:46:1617:26:920:-60.8022,0,-123.649	0/1:107:51,56:51:1823:56:1992:-145.402,0,-131.632	0/1:36:23,13:23:820:13:468:-31.3328,0,-63.2665	0/0:69:69,0:69:2445:0:0:0,-20.7711,-220	0/0:76:75,1:75:2680:1:36:0,-19.2891,-237.811	0/0:64:64,0:64:2279:0:0:0,-19.2659,-204.981	0/1:75:49,26:49:1739:26:921:-59.7949,0,-133.952	0/1:75:33,42:33:1188:42:1500:-111.524,0,-84.5435	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.106	0/0:99:99,0:99:3510:0:0:0,-29.802,-315.987
chr01	4537690	.	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chr01	5058735	.	G	A	158221	PASS	AB=0.455595;ABP=69.7351;AC=152;AF=0.808511;AN=188;AO=7353;CIGAR=1X;DP=9503;DPB=9503;DPRA=68.8406;EPP=15909.1;EPPR=4658.65;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9259;MQMR=59.986;NS=94;NUMALT=1;ODDS=0.11166;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263389;QR=76740;RO=2148;RPL=7;RPP=15909.1;RPPR=4658.65;RPR=7346;RUN=1;SAF=7353;SAP=15969.8;SAR=0;SRF=2148;SRP=4667.33;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,61:0:0:61:2188:-196.914,-18.3628,0	0/1:110:49,61:49:1736:61:2192:-164.326,0,-123.411	1/1:189:0,189:0:0:189:6784:-610.44,-56.8947,0	1/1:261:1,260:1:36:260:9323:-835.427,-74.9706,0	1/1:110:0,110:0:0:110:3942:-354.782,-33.1133,0	1/1:38:0,38:0:0:38:1368:-123.417,-11.4391,0	0/1:91:45,46:45:1608:46:1633:-119.863,0,-117.616	1/1:180:0,180:0:0:180:6420:-577.887,-54.1854,0	1/1:117:0,117:0:0:117:4190:-377.281,-35.2205,0	1/1:94:0,94:0:0:94:3362:-302.796,-28.2968,0	1/1:70:0,70:0:0:70:2508:-225.971,-21.0721,0	1/1:100:0,100:0:0:100:3592:-323.296,-30.103,0	0/1:68:33,35:33:1176:35:1249:-92.2431,0,-85.6777	1/1:97:0,97:0:0:97:3455:-311.154,-29.1999,0	0/1:62:28,34:28:1008:34:1220:-91.4429,0,-72.3725	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/1:25:13,12:13:460:12:432:-31.6954,0,-34.2096	0/1:163:90,73:90:3199:73:2620:-186.979,0,-239.066	0/1:183:105,77:105:3734:77:2768:-194.18,0,-281.111	0/1:185:121,64:121:4314:64:2300:-151.57,0,-332.746	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	1/1:121:8,113:8:266:113:4060:-341.321,-12.161,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	0/1:260:133,127:133:4776:127:4539:-330.407,0,-351.727	1/1:262:0,262:0:0:262:9379:-844.065,-78.8699,0	1/1:39:0,39:0:0:39:1404:-126.657,-11.7402,0	0/1:300:157,143:157:5611:143:5129:-371.438,0,-414.803	1/1:110:2,108:2:72:108:3866:-340.91,-26.2766,0	1/1:119:0,119:0:0:119:4259:-383.486,-35.8226,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:150:69,81:69:2460:81:2910:-216.965,0,-176.5	1/1:125:0,125:0:0:125:4477:-403.094,-37.6288,0	0/1:57:35,22:35:1256:22:788:-54.0861,0,-96.1866	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:101:55,46:55:1972:46:1629:-116.492,0,-147.346	1/1:30:0,30:0:0:30:1072:-96.7878,-9.0309,0	1/1:238:0,238:0:0:238:8545:-768.726,-71.6451,0	1/1:77:1,76:1:36:76:2732:-242.524,-19.581,0	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	1/1:127:0,127:0:0:127:4551:-409.562,-38.2308,0	1/1:108:0,108:0:0:108:3869:-348.392,-32.5112,0	0/1:190:102,88:102:3638:88:3149:-226.401,0,-270.429	0/1:84:56,28:56:1980:28:1008:-65.7498,0,-153.186	0/1:167:105,62:105:3756:62:2232:-150.872,0,-287.968	0/1:93:42,51:42:1504:51:1832:-137.165,0,-107.659	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:118:0,118:0:0:118:4212:-379.259,-35.5215,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:132:0,132:0:0:132:4732:-426.033,-39.736,0	1/1:51:0,51:0:0:51:1825:-164.531,-15.3525,0	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:107:0,107:0:0:107:3848:-346.514,-32.2102,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:189:1,188:1:36:188:6733:-602.445,-53.2964,0	0/1:218:113,105:113:4052:105:3762:-273.155,0,-299.242	1/1:96:0,96:0:0:96:3450:-310.711,-28.8989,0	1/1:111:0,111:0:0:111:3973:-357.76,-33.4143,0	1/1:168:1,167:1:36:167:5963:-533.123,-46.9748,0	1/1:119:3,116:3:108:116:4109:-359.915,-25.7474,0	1/1:51:1,50:1:36:50:1796:-158.329,-11.7594,0	1/1:88:0,88:0:0:88:3148:-283.544,-26.4906,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	0/1:91:47,44:47:1684:44:1576:-114.714,0,-124.453	0/1:81:45,36:45:1616:36:1292:-92.2003,0,-121.347	1/1:230:0,230:0:0:230:8213:-739.182,-69.2369,0	1/1:171:0,171:0:0:171:6132:-551.979,-51.4761,0	0/1:296:158,138:158:5652:138:4925:-354.296,0,-419.696	1/1:95:6,89:6:216:89:3196:-268.072,-8.80734,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:127:82,45:82:2936:45:1616:-107.499,0,-226.243	0/1:127:84,43:84:2996:43:1525:-99.1998,0,-231.639	0/1:176:95,81:95:3396:81:2895:-207.787,0,-252.874	0/1:69:34,35:34:1215:35:1248:-91.8538,0,-88.8847	0/1:62:27,35:27:960:35:1260:-95.0416,0,-68.0524	1/1:71:1,70:1:36:70:2516:-223.093,-17.7749,0	0/1:130:71,59:71:2539:59:2124:-152.294,0,-189.627	0/1:39:18,21:18:640:21:756:-56.6271,0,-46.1891	1/1:90:0,90:0:0:90:3217:-289.623,-27.0927,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:46:0,46:0:0:46:1643:-148.158,-13.8474,0	0/1:89:47,42:47:1684:42:1508:-109.223,0,-125.055	0/1:58:40,18:40:1440:18:648:-41.1921,0,-112.438	1/1:145:0,145:0:0:145:5184:-466.693,-43.6494,0	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0
chr01	5058795	.	TCCT	CCCT	104891	PASS	AB=0.453571;ABP=55.4358;AC=154;AF=0.819149;AN=188;AO=4960;CIGAR=1X3M;DP=6534;DPB=6534.5;DPRA=17.5538;EPP=10764.8;EPPR=3353.59;GTI=7;LEN=1;MEANALT=1.29032;MQM=59.9998;MQMR=59.9857;NS=94;NUMALT=1;ODDS=0.341452;PAIRED=0;PAIREDR=0;PAO=1;PQA=16;PQR=0;PRO=0;QA=176662;QR=54532;RO=1543;RPL=4959;RPP=10764.8;RPPR=3353.59;RPR=1;RUN=1;SAF=0;SAP=10773.5;SAR=4960;SRF=0;SRP=3353.59;SRR=1543;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	0/1:79:45,34:45:1591:34:1209:-85.3328,0,-119.698	1/1:87:0,87:0:0:87:3086:-277.966,-26.1896,0	1/1:174:1,171:1:36:171:6068:-542.624,-48.5387,0	1/1:108:2,106:2:72:106:3762:-331.942,-25.6745,0	1/1:43:0,40:0:0:40:1440:-129.538,-12.0412,0	0/1:67:39,28:39:1386:28:985:-68.7925,0,-104.87	1/1:85:0,85:0:0:85:3017:-271.76,-25.5876,0	1/1:84:0,83:0:0:83:2957:-266.072,-24.9855,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:49:0,49:0:0:49:1740:-156.884,-14.7505,0	1/1:94:0,94:0:0:94:3364:-302.976,-28.2968,0	0/1:67:34,33:34:1202:33:1188:-87.0596,0,-88.3152	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:55:31,24:31:1106:24:860:-61.1652,0,-83.2939	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	0/1:31:11,20:11:388:20:720:-55.7968,0,-25.9249	0/1:27:13,14:13:461:14:504:-37.5703,0,-33.6979	0/1:147:84,63:84:2978:63:2255:-158.961,0,-224.002	0/1:269:141,128:141:4936:128:4574:-330.845,0,-363.421	0/1:37:27,9:27:960:9:324:-18.4438,0,-75.6643	1/1:64:1,63:1:36:63:2241:-198.354,-15.6676,0	1/1:34:0,34:0:0:34:1182:-106.681,-10.235,0	1/1:51:1,49:1:36:49:1748:-154.054,-11.7631,0	0/1:131:69,62:69:2432:62:2217:-160.299,0,-179.642	1/1:149:0,149:0:0:149:5267:-474.169,-44.8535,0	1/1:27:0,26:0:0:26:928:-83.4785,-7.82678,0	0/1:150:88,62:88:3094:62:2216:-154.55,0,-233.536	1/1:109:2,105:2:67:105:3730:-329.556,-26.1623,0	1/1:79:1,78:1:32:78:2769:-246.252,-20.5821,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:180:89,89:89:3122:89:3196:-234.012,0,-227.357	1/1:69:0,69:0:0:69:2442:-220.032,-20.7711,0	0/1:45:21,24:21:751:24:845:-62.8207,0,-54.3698	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:123:66,57:66:2317:57:2040:-146.845,0,-171.765	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:129:0,128:0:0:128:4505:-405.259,-38.5318,0	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	1/1:68:0,68:0:0:68:2420:-218.056,-20.47,0	1/1:69:1,68:1:36:68:2413:-213.827,-17.1728,0	1/1:107:1,104:1:36:104:3679:-327.716,-28.368,0	0/1:122:70,52:70:2474:52:1868:-131.674,0,-186.189	0/1:72:34,38:34:1212:38:1345:-99.674,0,-87.7127	0/1:104:58,44:58:2052:44:1572:-110.75,0,-153.929	0/1:69:30,39:30:1060:39:1396:-105.168,0,-74.9397	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:113:0,113:0:0:113:4018:-361.809,-34.0164,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:103:0,102:0:0:102:3657:-328.972,-30.7051,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:73:0,71:0:0:71:2533:-227.86,-21.3731,0	1/1:75:3,72:3:108:72:2569:-221.383,-12.5021,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:106:0,106:0:0:106:3767:-339.226,-31.9092,0	0/1:125:66,59:66:2359:59:2093:-151.009,0,-174.94	1/1:56:0,55:0:0:55:1972:-177.395,-16.5567,0	1/1:57:0,57:0:0:57:2037:-183.602,-17.1587,0	1/1:93:0,93:0:0:93:3267:-294.25,-27.9958,0	1/1:120:0,120:0:0:120:4304:-387.536,-36.1236,0	1/1:51:0,51:0:0:51:1831:-165.071,-15.3525,0	1/1:42:0,42:0:0:42:1497:-135.023,-12.6433,0	1/1:34:1,33:1:36:33:1184:-103.27,-6.63675,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:79:48,31:48:1694:31:1093:-74.8963,0,-128.965	0/1:70:46,24:46:1624:24:856:-56.289,0,-125.377	1/1:99:0,97:0:0:97:3469:-312.111,-29.1999,0	1/1:142:0,140:0:0:140:4980:-447.99,-42.1442,0	0/1:102:46,55:46:1613:55:1938:-143.929,0,-114.637	1/1:74:1,73:1:36:73:2589:-229.66,-18.6779,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:63:41,22:41:1446:22:773:-50.9246,0,-111.471	0/1:78:37,41:37:1325:41:1472:-109.296,0,-96.0716	0/1:87:59,27:59:2088:27:934:-58.1978,0,-162.019	0/1:56:32,24:32:1137:24:849:-59.8701,0,-85.7815	0/1:65:39,26:39:1396:26:919:-63.4592,0,-106.372	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:118:52,65:52:1837:65:2313:-172.849,0,-130.029	0/1:18:9,9:9:316:9:320:-23.7238,0,-23.3602	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:57:0,57:0:0:57:2025:-182.521,-17.1587,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:90:43,47:43:1507:47:1680:-124.394,0,-108.828	0/1:68:50,18:50:1778:18:648:-38.1818,0,-139.832	1/1:103:2,99:2:71:99:3541:-312.157,-24.0143,0	1/1:107:0,107:0:0:107:3835:-345.346,-32.2102,0
chr01	5081462	.	G	A	111608	PASS	AB=0.483228;ABP=10.3671;AC=152;AF=0.808511;AN=188;AO=5249;CIGAR=1X;DP=6823;DPB=6823;DPRA=36.672;EPP=11383.7;EPPR=3386.21;GTI=3;LEN=1;MEANALT=1.03226;MQM=59.9524;MQMR=59.9624;NS=94;NUMALT=1;ODDS=0.715345;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187474;QR=55838;RO=1570;RPL=5247;RPP=11383.7;RPPR=3386.21;RPR=2;RUN=1;SAF=0;SAP=11401.1;SAR=5249;SRF=0;SRP=3412.22;SRR=1570;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:540:-48.9356,-4.51545,0	0/1:106:63,43:63:2221:43:1539:-106.894,0,-168.244	1/1:82:0,82:0:0:82:2924:-263.393,-24.6845,0	1/1:123:0,123:0:0:123:4407:-396.801,-37.0267,0	1/1:46:0,46:0:0:46:1626:-146.626,-13.8474,0	1/1:70:0,70:0:0:70:2497:-224.981,-21.0721,0	0/1:90:49,41:49:1752:41:1476:-106.043,0,-130.871	1/1:211:2,208:2:72:208:7433:-662.229,-56.6328,0	1/1:76:0,76:0:0:76:2706:-243.771,-22.8783,0	1/1:111:0,111:0:0:111:3950:-355.691,-33.4143,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:37:13,24:13:468:24:864:-66.9445,0,-31.3215	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:32:15,17:15:523:17:612:-45.7805,0,-37.7655	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:28:3,25:3:104:25:888:-71.7907,0,-1.27397	0/1:40:28,12:28:996:12:432:-27.18,0,-77.9137	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:98:40,58:40:1431:58:2071:-157.159,0,-99.5859	0/1:103:57,46:57:2010:46:1636:-116.523,0,-150.166	0/1:90:53,37:53:1887:37:1324:-92.3694,0,-143.015	1/1:90:0,89:0:0:89:3174:-285.524,-26.7917,0	1/1:115:3,112:3:99:112:4004:-351.311,-25.3819,0	1/1:41:0,41:0:0:41:1449:-130.705,-12.3422,0	0/1:416:213,203:213:7594:203:7280:-530.021,0,-558.27	1/1:106:0,106:0:0:106:3803:-341.976,-31.9092,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:147:64,83:64:2280:83:2972:-223.461,0,-161.211	1/1:239:0,239:0:0:239:8486:-763.734,-71.9462,0	1/1:87:0,87:0:0:87:3097:-278.957,-26.1896,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:106:70,36:70:2496:36:1288:-84.3144,0,-192.984	1/1:281:0,281:0:0:281:10013:-901.077,-84.5894,0	0/1:15:9,6:9:311:6:212:-14.9093,0,-23.8083	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:121:49,70:49:1752:70:2505:-189.507,0,-121.782	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:79:0,79:0:0:79:2829:-254.847,-23.7814,0	1/1:25:0,25:0:0:25:880:-79.5158,-7.52575,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:84:0,84:0:0:84:3000:-270.192,-25.2865,0	1/1:82:1,81:1:32:81:2896:-257.677,-21.4851,0	0/1:176:74,102:74:2631:102:3617:-272.752,0,-183.829	0/1:101:55,46:55:1925:46:1648:-118.205,0,-143.014	0/1:178:100,78:100:3567:78:2770:-195.956,0,-267.655	0/1:62:19,43:19:680:43:1540:-120.229,0,-42.8653	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:103:0,103:0:0:103:3685:-331.851,-31.0061,0	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	1/1:23:0,23:0:0:23:819:-74.0316,-6.92369,0	1/1:76:0,76:0:0:76:2692:-242.502,-22.8783,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:9:0,9:0:0:9:311:-28.3214,-2.70927,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:107:0,107:0:0:107:3816:-343.635,-32.2102,0	0/1:179:68,111:68:2419:111:3972:-303.785,0,-164.082	1/1:77:1,76:1:36:76:2732:-242.522,-19.581,0	1/1:69:0,69:0:0:69:2465:-222.104,-20.7711,0	1/1:186:2,184:2:72:184:6581:-585.533,-49.1549,0	1/1:97:1,96:1:36:96:3443:-306.484,-25.6016,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:40:0,40:0:0:40:1435:-129.448,-12.0412,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:117:61,56:61:2180:56:2008:-145.773,0,-161.246	0/1:51:30,21:30:1072:21:741:-51.6591,0,-81.4399	1/1:146:0,146:0:0:146:5195:-467.69,-43.9504,0	1/1:63:1,62:1:32:62:2209:-195.875,-15.7656,0	0/1:131:85,46:85:3026:46:1630:-107.553,0,-233.135	1/1:143:2,141:2:72:141:5043:-447.179,-36.2106,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:82:37,45:37:1315:45:1611:-120.595,0,-93.9666	0/1:76:46,30:46:1636:30:1080:-74.6304,0,-124.65	0/1:155:85,70:85:3031:70:2501:-178.681,0,-226.353	0/1:78:40,38:40:1419:38:1352:-98.5,0,-104.526	0/1:20:14,6:14:495:6:208:-13.0379,0,-38.8624	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:58:32,26:32:1148:26:923:-65.927,0,-86.1701	0/1:25:16,9:16:564:9:324:-21.9801,0,-43.5646	1/1:36:1,35:1:36:35:1252:-109.387,-7.23881,0	1/1:31:0,31:0:0:31:1106:-99.8506,-9.33193,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:28:22,6:22:783:6:216:-11.3617,0,-62.3641	0/1:44:30,14:30:1059:14:504:-32.4528,0,-82.3751	1/1:107:0,107:0:0:107:3840:-345.785,-32.2102,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0
chr01	5106004	.	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chr01	5237333	.	G	A	108796	PASS	AB=0.454265;ABP=61.8038;AC=151;AF=0.811828;AN=186;AO=5163;CIGAR=1X;DP=6942;DPB=6942;DPRA=75.4457;EPP=11214.3;EPPR=3857.38;GTI=4;LEN=1;MEANALT=1;MQM=59.9901;MQMR=59.9337;NS=93;NUMALT=1;ODDS=1.47499;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184693;QR=63656;RO=1779;RPL=5163;RPP=11214.3;RPPR=3848.71;RPR=0;RUN=1;SAF=0;SAP=11214.3;SAR=5163;SRF=1;SRP=3857.38;SRR=1778;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	0/1:123:77,46:77:2756:46:1652:-111.942,0,-211.255	1/1:57:0,57:0:0:57:2017:-181.801,-17.1587,0	1/1:166:0,166:0:0:166:5955:-536.056,-49.971,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	0/1:77:46,31:46:1652:31:1108:-76.8517,0,-125.789	1/1:86:0,86:0:0:86:3063:-275.899,-25.8886,0	1/1:54:0,54:0:0:54:1932:-174.156,-16.2556,0	1/1:86:0,86:0:0:86:3081:-277.473,-25.8886,0	1/1:78:0,78:0:0:78:2763:-248.909,-23.4803,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	0/1:63:28,35:28:1008:35:1248:-93.66,0,-72.0715	1/1:98:0,98:0:0:98:3515:-316.559,-29.5009,0	0/1:44:22,22:22:779:22:792:-58.3604,0,-57.1867	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:87:0,87:0:0:87:3113:-280.396,-26.1896,0	0/1:64:34,30:34:1220:30:1068:-77.1648,0,-90.8409	0/1:41:26,15:26:932:15:536:-36.2326,0,-71.8566	0/1:179:90,89:90:3240:89:3196:-233.978,0,-237.936	0/1:88:44,44:44:1572:44:1584:-116.361,0,-115.281	0/1:70:58,12:58:2080:12:424:-17.4243,0,-166.128	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:63:3,60:3:108:60:2152:-183.872,-8.88972,0	1/1:60:0,60:0:0:60:2125:-191.517,-18.0618,0	0/1:192:110,82:110:3932:82:2938:-206.85,0,-295.719	1/1:129:0,129:0:0:129:4611:-415.152,-38.8329,0	1/1:41:0,41:0:0:41:1471:-132.686,-12.3422,0	0/1:229:146,83:146:5232:83:2969:-198.506,0,-402.081	1/1:82:0,82:0:0:82:2932:-264.115,-24.6845,0	1/1:69:0,69:0:0:69:2484:-223.813,-20.7711,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:182:87,95:87:3115:95:3404:-251.787,0,-225.789	1/1:104:0,104:0:0:104:3696:-332.841,-31.3071,0	0/1:61:35,26:35:1260:26:936:-66.1966,0,-95.3427	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:178:81,97:81:2884:97:3444:-256.589,0,-205.894	1/1:40:0,40:0:0:40:1413:-127.465,-12.0412,0	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	1/1:82:0,82:0:0:82:2952:-265.913,-24.6845,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:50:1,49:1:36:49:1764:-155.445,-11.4532,0	0/1:109:53,56:53:1896:56:2000:-147.461,0,-138.106	0/1:71:38,33:38:1356:33:1179:-85.0441,0,-100.967	0/1:125:73,52:73:2612:52:1841:-128.34,0,-197.663	0/1:130:73,57:73:2612:57:2040:-144.738,0,-196.194	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:87:1,86:1:36:86:3076:-273.47,-22.5913,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:29:1,28:1:32:28:993:-86.4849,-5.53056,0	1/1:84:1,83:1:36:83:2976:-264.474,-21.6882,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:61:1,60:1:36:60:2152:-190.349,-14.7646,0	1/1:127:0,127:0:0:127:4544:-409.126,-38.2308,0	.:.:.:.:.:.:.:.	1/1:123:0,123:0:0:123:4412:-397.251,-37.0267,0	0/1:150:79,71:79:2808:71:2556:-185.135,0,-207.804	1/1:112:1,111:1:36:111:3930:-350.295,-30.1171,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:72:1,71:1:36:71:2540:-225.253,-18.0759,0	1/1:67:0,67:0:0:67:2386:-214.996,-20.169,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:77:0,77:0:0:77:2760:-248.641,-23.1793,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:100:56,44:56:1999:44:1556:-110.226,0,-150.08	0/1:62:42,20:42:1512:20:716:-46.1039,0,-117.711	1/1:102:0,102:0:0:102:3638:-327.625,-30.7051,0	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	0/1:78:37,41:37:1328:41:1472:-109.296,0,-96.3419	1/1:84:1,83:1:36:83:2962:-263.216,-21.6882,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:141:92,49:92:3304:49:1764:-116.599,0,-255.133	0/1:67:43,24:43:1544:24:856:-57.1921,0,-119.084	0/1:142:66,76:66:2356:76:2732:-203.376,0,-169.553	0/1:89:35,54:35:1247:54:1933:-147.454,0,-85.7401	0/1:56:28,28:28:1004:28:1004:-73.8182,0,-73.8182	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	0/1:124:64,60:64:2300:60:2137:-155.269,0,-169.933	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	1/1:75:1,74:1:36:74:2644:-234.609,-18.979,0	1/1:85:0,85:0:0:85:3060:-275.628,-25.5876,0	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	0/1:95:44,51:44:1557:51:1825:-135.933,0,-111.752	0/1:65:39,26:39:1375:26:932:-64.6319,0,-104.481	1/1:43:0,43:0:0:43:1548:-139.611,-12.9443,0	1/1:100:0,100:0:0:100:3571:-321.598,-30.103,0
chr01	5735830	.	T	C	24731	PASS	AB=0.293604;ABP=2502.08;AC=40;AF=0.212766;AN=188;AO=1994;CIGAR=1X;DP=12635;DPB=12635;DPRA=1.54787;EPP=4332.93;EPPR=23101;GTI=7;LEN=1;MEANALT=1.04545;MQM=55.2247;MQMR=31.7382;NS=94;NUMALT=1;ODDS=0.97344;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71135;QR=381174;RO=10637;RPL=0;RPP=4332.93;RPPR=23101;RPR=1994;RUN=1;SAF=1994;SAP=4332.93;SAR=0;SRF=10637;SRP=23101;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:106:81,25:81:2900:25:896:-48.7823,0,-126.469	0/0:145:145,0:145:5189:0:0:0,-43.6493,-259.975	0/1:309:198,111:198:7101:111:3967:-262.91,0,-230.285	0/0:281:281,0:281:10043:0:0:0,-84.5894,-716.276	0/1:83:75,8:75:2673:8:288:-1.24467,0,-145.56	0/1:50:36,14:36:1288:14:500:-30.1601,0,-33.7266	0/0:137:137,0:137:4900:0:0:0,-41.2411,-317.149	0/1:193:127,66:127:4541:66:2364:-154.154,0,-145.135	0/0:159:159,0:159:5677:0:0:0,-47.8638,-311.226	0/0:69:69,0:69:2472:0:0:0,-20.7711,-173.694	0/0:32:32,0:32:1152:0:0:0,-9.63296,-84.89	0/0:107:107,0:107:3836:0:0:0,-32.2102,-216.52	0/0:74:74,0:74:2652:0:0:0,-22.2762,-157.733	0/0:62:62,0:62:2228:0:0:0,-18.6639,-130.844	0/0:81:81,0:81:2907:0:0:0,-24.3834,-196.299	0/0:68:68,0:68:2440:0:0:0,-20.47,-141.728	0/0:35:35,0:35:1260:0:0:0,-10.536,-74.9072	0/0:32:32,0:32:1148:0:0:0,-9.63296,-63.9312	0/0:22:22,0:22:792:0:0:0,-6.62266,-44.3506	0/1:270:185,85:185:6609:85:3025:-190.803,0,-324.501	0/1:253:161,92:161:5780:92:3281:-218.359,0,-276.262	0/1:236:154,82:154:5521:82:2940:-193.155,0,-270.459	0/0:200:198,2:198:7112:2:72:0,-53.3742,-463.32	0/0:107:100,7:100:3577:7:252:0,-9.46749,-184.481	0/0:98:98,0:98:3520:0:0:0,-29.5009,-230.022	0/1:473:314,159:314:11276:159:5688:-367.999,0,-562.039	0/0:275:275,0:275:9837:0:0:0,-82.7832,-635.6	0/0:35:35,0:35:1260:0:0:0,-10.536,-90.5396	0/1:408:262,146:262:9412:146:5186:-343.515,0,-499.399	0/1:241:173,68:173:6178:68:2409:-142.793,0,-304.387	0/0:131:131,0:131:4708:0:0:0,-39.4349,-333.311	0/1:16:13,3:13:456:3:97:-4.21153,0,-28.3408	0/1:30:11,19:11:392:19:684:-52.1272,0,-15.4379	0/0:8:8,0:8:288:0:0:0,-2.40824,-19.408	0/1:14:10,4:10:360:4:144:-9.08548,0,-12.5977	0/1:15:7,8:7:252:8:288:-21.7249,0,-9.36218	0/1:295:225,70:225:8080:70:2465:-133.163,0,-427.644	0/1:322:241,81:241:8656:81:2892:-161.528,0,-406.243	0/0:38:38,0:38:1364:0:0:0,-11.4391,-68.9476	0/0:6:6,0:6:216:0:0:0,-1.80618,-10.8763	0/0:120:120,0:120:4270:0:0:0,-36.1236,-294.166	0/0:25:25,0:25:892:0:0:0,-7.52575,-56.9389	0/0:157:157,0:157:5617:0:0:0,-47.2617,-419.353	0/0:45:45,0:45:1616:0:0:0,-13.5463,-113.959	0/1:60:44,16:44:1563:16:576:-33.9798,0,-78.8856	0/1:216:147,69:147:5230:69:2480:-158.118,0,-255.946	0/0:175:175,0:175:6292:0:0:0,-52.6802,-396.95	0/0:247:247,0:247:8846:0:0:0,-74.3544,-593.744	0/0:159:159,0:159:5654:0:0:0,-47.8638,-366.573	0/0:143:143,0:143:5121:0:0:0,-43.0473,-360.183	0/1:306:246,60:246:8824:60:2148:-101.306,0,-456.709	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.3169	0/0:161:161,0:161:5788:0:0:0,-48.4658,-334.311	0/0:89:89,0:89:3200:0:0:0,-26.7917,-229.396	0/1:6:5,1:5:176:1:36:-1.78839,0,-3.24626	0/0:167:167,0:167:5988:0:0:0,-50.272,-407.046	0/0:94:94,0:94:3353:0:0:0,-28.2968,-210.407	0/1:7:5,2:5:180:2:72:-4.7276,0,-11.8382	0/1:17:9,8:9:324:8:288:-21.1411,0,-17.938	0/0:104:104,0:104:3736:0:0:0,-31.3071,-240.602	0/1:163:140,22:140:5012:22:792:-22.4074,0,-263.941	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.3323	0/0:230:230,0:230:8225:0:0:0,-69.2369,-581.872	0/1:391:278,113:278:9972:113:4017:-243.547,0,-496.769	0/0:63:62,1:62:2220:1:36:0,-15.5104,-140.191	0/1:173:113,60:113:4048:60:2115:-138.317,0,-202.464	0/1:257:168,88:168:5986:88:3156:-206.64,0,-302.051	0/1:361:204,157:204:7328:157:5574:-392.661,0,-320.798	0/1:12:8,4:8:288:4:144:-9.68238,0,-12.7634	0/1:109:78,31:78:2792:31:1108:-67.0939,0,-70.6866	0/1:98:69,29:69:2476:29:1040:-64.376,0,-114.484	0/0:23:23,0:23:824:0:0:0,-6.92369,-54.3498	0/1:293:236,57:236:8446:57:2024:-91.373,0,-218.515	0/1:130:89,41:89:3200:41:1468:-92.0087,0,-86.9407	0/1:182:135,47:135:4836:47:1684:-96.85,0,-244.295	0/0:215:215,0:215:7720:0:0:0,-64.7214,-514.951	0/1:214:191,23:191:6833:23:828:-9.41317,0,-239.473	0/1:136:94,42:94:3376:42:1508:-94.689,0,-94.4621	0/1:15:10,5:10:356:5:180:-12.0147,0,-9.66444	0/0:115:115,0:115:4132:0:0:0,-34.6184,-270.789	0/0:162:161,1:161:5788:1:36:0,-45.1723,-342.551	0/0:339:338,0:338:12132:0:0:0,-101.748,-850.106	0/0:126:126,0:126:4510:0:0:0,-37.9298,-320.153	0/0:74:74,0:74:2656:0:0:0,-22.2762,-181.283	0/0:42:42,0:42:1512:0:0:0,-12.6433,-109.501	0/0:128:128,0:128:4604:0:0:0,-38.5318,-313.691	0/0:39:39,0:39:1383:0:0:0,-11.7402,-76.5018	0/1:89:66,23:66:2376:23:811:-46.3452,0,-84.286	0/0:86:86,0:86:3092:0:0:0,-25.8886,-194.672	0/0:17:17,0:17:612:0:0:0,-5.11751,-35.9952	0/1:97:80,17:80:2863:17:612:-26.0139,0,-116.127	0/1:108:81,27:81:2912:27:964:-54.3835,0,-123.387	0/0:236:235,0:235:8421:0:0:0,-70.742,-583.022	0/0:86:86,0:86:3088:0:0:0,-25.8886,-193.306
chr01	5735871	.	G	A	14680.1	PASS	AB=0.531591;ABP=112.496;AC=93;AF=0.494681;AN=188;AO=6719;CIGAR=1X;DP=12647;DPB=12647;DPRA=0;EPP=14584.4;EPPR=12803.9;GTI=24;LEN=1;MEANALT=1.05319;MQM=18.0844;MQMR=54.9635;NS=94;NUMALT=1;ODDS=1.67769;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240640;QR=209681;RO=5923;RPL=6719;RPP=14593.1;RPPR=12639.8;RPR=0;RUN=1;SAF=6718;SAP=14584.4;SAR=1;SRF=5890;SRP=12579.6;SRR=33;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:106:59,46:59:2108:46:1639:-15.8432,0,-157.703	0/1:142:50,92:50:1780:92:3278:-49.5423,0,-116.988	0/1:312:169,143:169:5949:143:5115:-48.8006,0,-439.552	0/1:273:142,130:142:5016:130:4655:-150.46,0,-368.78	0/1:94:48,46:48:1711:46:1641:-48.5942,0,-123.567	0/1:57:27,30:27:943:30:1076:-12.5253,0,-65.9855	0/1:133:48,85:48:1703:85:3052:-111.523,0,-113.412	0/1:195:103,92:103:3645:92:3280:-31.9219,0,-268.149	0/1:158:66,92:66:2363:92:3295:-49.6089,0,-165.047	0/1:70:35,35:35:1229:35:1256:-43.143,0,-89.4276	0/1:38:20,18:20:691:18:644:-20.9728,0,-50.8674	0/1:108:50,58:50:1755:58:2068:-27.1,0,-124.201	0/1:73:37,36:37:1294:36:1292:-13.642,0,-94.4564	0/1:62:19,43:19:672:43:1536:-51.1412,0,-41.9431	0/1:80:33,47:33:1163:47:1683:-61.4813,0,-80.7661	0/1:68:20,48:20:688:48:1720:-56.5344,0,-41.6827	0/1:35:16,19:16:563:19:684:-12.5063,0,-40.4143	0/1:31:15,16:15:513:16:576:-6.59976,0,-35.8402	0/1:23:10,13:10:360:13:455:-5.94169,0,-25.7869	0/1:270:137,133:137:4861:133:4761:-160.387,0,-355.35	0/1:253:147,106:147:5186:106:3804:-96.1247,0,-389.32	0/1:242:117,125:117:4143:125:4479:-172.975,0,-298.011	0/1:200:81,119:81:2861:119:4234:-153.942,0,-195.763	0/1:111:36,75:36:1265:75:2684:-88.5939,0,-80.3071	0/1:98:45,53:45:1586:53:1904:-55.4934,0,-113.047	0/1:475:231,244:231:8231:244:8753:-335.545,0,-595.473	0/1:276:120,156:120:4260:156:5597:-167.116,0,-299.57	0/1:35:20,15:20:699:15:536:-15.3497,0,-52.4873	0/1:409:231,178:231:8191:178:6362:-225.477,0,-612.895	0/1:240:127,112:127:4436:112:4020:-110.748,0,-325.766	0/1:131:69,62:69:2452:62:2224:-71.387,0,-181.143	0/1:15:10,5:10:351:5:180:-3.73363,0,-27.3694	0/1:29:22,7:22:788:7:252:-2.74711,0,-61.8126	0/1:8:5,3:5:176:3:108:-0.668225,0,-13.7618	0/1:13:6,7:6:216:7:252:-3.11853,0,-15.8567	0/0:17:12,5:12:432:5:176:0,-0.0650666,-34.1283	0/1:293:127,166:127:4503:166:5960:-239.016,0,-316.866	0/1:324:146,178:146:5196:178:6395:-196.198,0,-368.225	0/1:37:13,24:13:446:24:864:-14.6838,0,-29.2924	0/1:6:1,5:1:36:5:180:-5.80392,0,-1.78699	0/1:120:64,56:64:2291:56:2008:-54.5827,0,-169.729	0/1:25:11,14:11:377:14:504:-15.2489,0,-26.6936	0/1:156:102,54:102:3614:54:1931:-41.1667,0,-277.802	0/1:44:20,23:20:712:23:828:-29.4996,0,-51.0677	0/1:63:30,33:30:1028:33:1184:-39.6836,0,-73.7548	0/1:216:97,119:97:3429:119:4268:-168.192,0,-243.564	0/1:175:99,76:99:3515:76:2693:-24.5261,0,-262.971	0/1:246:106,140:106:3787:140:5016:-175.573,0,-266.25	0/1:159:59,100:59:2099:100:3572:-131.837,0,-141.177	0/1:142:74,68:74:2627:68:2444:-78.7445,0,-192.747	0/1:310:113,197:113:4022:197:7060:-294.665,0,-268.007	0/1:8:6,2:6:212:2:72:-1.37149,0,-17.0037	0/1:161:77,84:77:2708:84:3020:-34.2579,0,-194.848	0/1:91:44,47:44:1556:47:1688:-64.8002,0,-112.786	0/1:6:1,5:1:36:5:180:-3.24801,0,-1.78839	0/1:163:82,81:82:2892:81:2892:-83.1069,0,-210.96	0/1:91:27,64:27:955:64:2288:-89.3601,0,-58.8127	0/1:6:4,2:4:131:2:72:-2.34181,0,-10.3049	0/1:17:12,5:12:419:5:180:-4.92498,0,-32.9139	0/1:106:45,61:45:1612:61:2192:-66.7364,0,-113.201	0/1:160:64,96:64:2262:96:3448:-125.718,0,-154.932	0/1:4:2,2:2:72:2:72:-2.57561,0,-5.62767	0/1:230:105,124:105:3744:124:4448:-175.423,0,-267.305	0/1:388:190,198:190:6778:198:7111:-238.865,0,-492.51	0/1:61:27,34:27:955:34:1220:-36.8671,0,-67.4765	0/1:170:92,78:92:3251:78:2800:-90.8589,0,-241.234	0/1:257:142,115:142:5008:115:4132:-131.816,0,-373.051	0/1:356:194,162:194:6874:162:5796:-189.912,0,-510.754	0/1:12:6,6:6:212:6:216:-6.25067,0,-15.7872	0/1:109:41,68:41:1456:68:2432:-38.6602,0,-98.3864	0/1:99:36,63:36:1276:63:2264:-93.4929,0,-85.3004	0/1:24:9,15:9:324:15:536:-20.833,0,-22.2599	0/1:291:86,205:86:3051:205:7329:-116.791,0,-184.994	0/1:131:58,73:58:2068:73:2624:-34.8335,0,-145.633	0/1:179:98,81:98:3487:81:2885:-74.3416,0,-259.611	0/1:215:89,126:89:3124:126:4520:-161.58,0,-216.375	0/1:222:77,145:77:2747:145:5191:-84.7933,0,-177.549	0/1:135:58,77:58:2060:77:2760:-39.8259,0,-144.582	0/1:15:7,8:7:252:8:288:-3.50533,0,-18.4849	0/1:117:54,63:54:1918:63:2268:-66.371,0,-137.068	0/1:165:84,81:84:2975:81:2885:-35.0004,0,-217.699	0/1:339:167,172:167:5960:172:6149:-212.059,0,-433.691	0/1:124:65,59:65:2282:59:2120:-69.9391,0,-168.014	0/1:76:34,42:34:1220:42:1512:-51.3603,0,-87.064	0/1:39:22,17:22:772:17:612:-18.4517,0,-57.9315	0/1:124:56,68:56:1967:68:2440:-85.6009,0,-139.656	0/1:38:16,22:16:540:22:784:-10.4223,0,-37.2668	0/1:89:43,46:43:1479:46:1640:-18.7091,0,-105.012	0/1:86:48,38:48:1686:38:1364:-13.7724,0,-125.671	0/1:17:6,11:6:212:11:392:-12.1821,0,-13.4978	0/1:97:28,69:28:992:69:2467:-79.6984,0,-60.1352	0/1:110:36,74:36:1272:74:2638:-98.5342,0,-81.4794	0/1:235:112,123:112:3939:123:4391:-151.086,0,-282.755	0/1:88:28,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chr01	5799649	.	G	T	157408	PASS	AB=0.51264;ABP=7.95101;AC=153;AF=0.81383;AN=188;AO=7248;CIGAR=1X;DP=8996;DPB=8996;DPRA=0;EPP=15689.8;EPPR=3796.57;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.7425;MQMR=59.7584;NS=94;NUMALT=1;ODDS=2.89217;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=259831;QR=62555;RO=1747;RPL=5;RPP=15698.4;RPPR=3796.57;RPR=7243;RUN=1;SAF=7247;SAP=15733.2;SAR=1;SRF=1747;SRP=3796.57;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:67:0,67:0:0:67:2367:-213.094,-20.169,0	0/1:118:63,55:63:2230:55:1959:-141.043,0,-165.435	1/1:244:0,244:0:0:244:8764:-788.691,-73.4513,0	1/1:258:0,258:0:0:258:9260:-833.332,-77.6657,0	1/1:93:0,93:0:0:93:3317:-298.74,-27.9958,0	1/1:29:0,29:0:0:29:1044:-94.2464,-8.72987,0	0/1:88:39,49:39:1385:49:1745:-130.842,0,-98.4562	1/1:139:1,138:1:36:138:4937:-440.621,-38.2449,0	1/1:94:0,93:0:0:93:3342:-300.607,-27.9958,0	1/1:51:0,51:0:0:51:1836:-165.518,-15.3525,0	1/1:65:0,65:0:0:65:2336:-210.464,-19.567,0	1/1:133:0,133:0:0:133:4775:-429.676,-40.037,0	0/1:94:54,40:54:1944:40:1440:-101.573,0,-146.909	1/1:56:0,56:0:0:56:2008:-180.989,-16.8577,0	0/1:80:33,47:33:1188:47:1692:-128.484,0,-83.1438	1/1:131:0,131:0:0:131:4708:-423.841,-39.4349,0	1/1:39:0,39:0:0:39:1400:-126.283,-11.7402,0	0/1:35:19,16:19:684:16:576:-41.6389,0,-51.3461	0/1:40:18,22:18:648:22:792:-59.539,0,-46.6107	0/1:214:98,116:98:3509:116:4168:-310.834,0,-251.585	0/1:128:60,68:60:2118:68:2444:-181.666,0,-152.344	0/1:93:66,27:66:2357:27:968:-59.4407,0,-184.387	1/1:112:0,112:0:0:112:4007:-360.796,-33.7154,0	0/1:74:11,63:11:396:63:2264:-181.738,0,-13.7065	1/1:92:0,92:0:0:92:3300:-297.187,-27.6948,0	0/1:190:88,102:88:3164:102:3648:-271.323,0,-227.77	1/1:237:0,237:0:0:237:8498:-764.482,-71.3441,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:247:128,119:128:4608:119:4265:-309.671,0,-340.523	1/1:113:0,113:0:0:113:4060:-365.559,-34.0164,0	1/1:99:0,99:0:0:99:3560:-320.6,-29.802,0	1/1:16:0,16:0:0:16:576:-52.1704,-4.81648,0	1/1:20:0,20:0:0:20:720:-65.1242,-6.0206,0	0/1:17:6,11:6:216:11:396:-30.8643,0,-14.6647	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:47:0,47:0:0:47:1673:-150.407,-14.1484,0	0/1:186:91,95:91:3257:95:3416:-251.651,0,-237.338	1/1:92:1,91:1:36:91:3254:-289.47,-24.0965,0	0/1:43:26,17:26:936:17:608:-42.1077,0,-71.6152	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:139:47,92:47:1692:92:3293:-254.74,0,-110.724	1/1:41:0,41:0:0:41:1476:-133.006,-12.3422,0	1/1:199:0,199:0:0:199:7132:-641.828,-59.905,0	1/1:66:0,66:0:0:66:2372:-213.735,-19.868,0	1/1:64:0,64:0:0:64:2300:-207.256,-19.2659,0	1/1:114:0,114:0:0:114:4073:-366.75,-34.3174,0	1/1:132:0,132:0:0:132:4712:-424.162,-39.736,0	0/1:187:85,102:85:3045:102:3649:-272.32,0,-217.98	0/1:75:40,35:40:1432:35:1255:-90.6748,0,-106.6	0/1:114:52,62:52:1872:62:2197:-163.673,0,-134.442	0/1:107:39,68:39:1385:68:2444:-188.004,0,-92.713	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:167:0,167:0:0:167:6000:-539.882,-50.272,0	1/1:69:0,69:0:0:69:2480:-223.452,-20.7711,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:191:0,191:0:0:191:6826:-614.396,-57.4967,0	1/1:80:0,80:0:0:80:2861:-257.723,-24.0824,0	1/1:10:0,10:0:0:10:356:-32.3803,-3.0103,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:76:0,76:0:0:76:2724:-245.392,-22.8783,0	1/1:94:0,94:0:0:94:3380:-304.403,-28.2968,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:143:0,143:0:0:143:5144:-463.094,-43.0473,0	0/1:82:43,39:43:1548:39:1389:-100.609,0,-114.898	1/1:57:0,57:0:0:57:2040:-183.87,-17.1587,0	1/1:142:0,142:0:0:142:5102:-459.305,-42.7463,0	1/1:245:5,240:5:180:240:8586:-755.921,-57.2003,0	1/1:177:3,174:3:108:174:6227:-550.433,-43.2071,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:68:0,68:0:0:68:2438:-219.649,-20.47,0	1/1:46:0,46:0:0:46:1656:-149.324,-13.8474,0	1/1:18:0,18:0:0:18:648:-58.6495,-5.41854,0	0/1:106:57,49:57:2036:49:1745:-125.225,0,-150.73	0/1:59:30,29:30:1076:29:1044:-76.514,0,-79.3921	1/1:170:0,170:0:0:170:6092:-547.662,-51.1751,0	1/1:157:0,157:0:0:157:5621:-506.005,-47.2617,0	0/1:107:51,56:51:1832:56:2016:-149.478,0,-132.942	1/1:104:2,102:2:57:102:3657:-323.87,-25.8941,0	1/1:19:0,19:0:0:19:680:-61.521,-5.71957,0	0/1:129:63,66:63:2256:66:2364:-174.165,0,-164.465	0/1:98:51,47:51:1817:47:1692:-123.066,0,-134.221	0/1:201:94,107:94:3365:107:3825:-283.934,0,-242.546	0/1:63:35,28:35:1260:28:1008:-72.0691,0,-94.73	0/1:108:59,49:59:2112:49:1751:-125.226,0,-156.591	1/1:60:0,60:0:0:60:2156:-194.292,-18.0618,0	0/1:130:70,60:70:2501:60:2160:-155.533,0,-186.202	0/1:23:11,12:11:396:12:432:-32.2893,0,-29.0591	1/1:69:0,69:0:0:69:2484:-223.788,-20.7711,0	1/1:95:0,95:0:0:95:3403:-306.434,-28.5979,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:85:42,43:42:1512:43:1538:-113.093,0,-110.778	0/1:89:61,28:61:2181:28:1008:-64.2447,0,-169.76	1/1:82:0,82:0:0:82:2936:-264.471,-24.6845,0	1/1:108:0,108:0:0:108:3880:-349.384,-32.5112,0
chr01	5799656	.	C	A	28751.4	PASS	AB=0.486056;ABP=8.94508;AC=35;AF=0.18617;AN=188;AO=1723;CIGAR=1X;DP=8877;DPB=8877;DPRA=1.28542;EPP=3675.29;EPPR=15241.6;GTI=0;LEN=1;MEANALT=1.02439;MQM=59.7406;MQMR=59.7593;NS=94;NUMALT=1;ODDS=3.0036;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61437;QR=254706;RO=7149;RPL=8;RPP=3675.29;RPPR=15250.2;RPR=1715;RUN=1;SAF=1723;SAP=3744.46;SAR=0;SRF=7148;SRP=15518.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.734	0/1:115:53,62:53:1896:62:2220:-165.42,0,-136.274	0/0:243:243,0:243:8620:0:0:0,-73.1503,-775.69	0/0:257:253,0:253:9011:0:0:0,-76.1606,-810.605	0/0:93:93,0:93:3287:0:0:0,-27.9958,-296.044	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2464	0/1:90:51,39:51:1805:39:1392:-98.4863,0,-135.633	0/0:135:134,1:134:4757:1:36:0,-37.0408,-424.455	0/0:95:95,0:95:3357:0:0:0,-28.5978,-302.325	0/0:50:50,0:50:1778:0:0:0,-15.0515,-160.301	0/0:63:63,0:63:2242:0:0:0,-18.9649,-202.038	0/0:133:133,0:133:4729:0:0:0,-40.037,-425.533	0/1:95:41,54:41:1476:54:1936:-145.888,0,-104.51	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.819	0/1:79:46,32:46:1639:32:1144:-79.4271,0,-123.958	0/0:129:129,0:129:4591:0:0:0,-38.8329,-413.331	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.283	0/1:35:16,19:16:576:19:676:-50.6238,0,-41.6389	0/1:41:22,19:22:768:19:684:-49.5481,0,-57.0699	0/1:211:115,96:115:4098:96:3417:-244.214,0,-305.444	0/1:126:66,60:66:2359:60:2144:-155.284,0,-174.621	0/1:89:27,62:27:955:62:2216:-172.909,0,-59.4723	0/0:109:109,0:109:3886:0:0:0,-32.8123,-349.924	0/1:74:63,11:63:2256:11:396:-13.7065,0,-181.019	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.468	0/1:188:101,87:101:3616:87:3108:-223.344,0,-269.046	0/0:234:234,0:234:8345:0:0:0,-70.441,-750.897	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/1:241:116,125:116:4134:125:4447:-327.84,0,-299.695	0/0:107:107,0:107:3826:0:0:0,-32.2102,-344.513	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.404	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9319	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7112	0/1:16:11,5:11:392:5:176:-11.3602,0,-30.8027	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.114	0/1:180:93,87:93:3319:87:3124:-227.182,0,-244.732	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.502	0/1:43:17,26:17:608:26:936:-71.6014,0,-42.1077	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:136:89,47:89:3183:47:1669:-109.555,0,-245.749	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.237	0/0:196:196,0:196:6977:0:0:0,-59.0019,-627.912	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.375	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.296	0/0:114:114,0:114:4036:0:0:0,-34.3174,-363.427	0/0:132:132,0:132:4704:0:0:0,-39.736,-423.127	0/1:189:104,85:104:3680:85:3029:-215.936,0,-274.508	0/1:75:34,41:34:1224:41:1453:-108.487,0,-87.8851	0/1:108:58,50:58:2076:50:1784:-128.332,0,-154.598	0/1:107:68,39:68:2410:39:1400:-94.0632,0,-184.946	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:168:168,0:168:5986:0:0:0,-50.573,-538.825	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:190:189,1:189:6755:1:36:0,-53.6025,-604.419	0/0:79:79,0:79:2812:0:0:0,-23.7814,-253.318	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6548	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:76:75,1:75:2671:1:36:0,-19.2851,-237.029	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.279	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:139:139,0:139:4966:0:0:0,-41.8432,-447.085	0/1:76:37,39:37:1324:39:1396:-103.058,0,-96.573	0/0:57:57,0:57:2022:0:0:0,-17.1587,-182.247	0/0:142:142,0:142:5071:0:0:0,-42.7463,-456.513	0/0:234:227,7:227:8075:7:237:0,-48.7844,-704.949	0/0:176:172,4:172:6126:4:144:0,-39.6701,-538.107	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.01	0/0:67:67,0:67:2377:0:0:0,-20.169,-214.159	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.77	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.927	0/1:109:50,59:50:1776:59:2076:-153.795,0,-127.113	0/1:60:29,31:29:1027:31:1101:-81.3366,0,-74.6804	0/0:170:170,0:170:5999:0:0:0,-51.1751,-539.584	0/0:150:150,0:150:5343:0:0:0,-45.1545,-481.001	0/1:105:56,49:56:2012:49:1752:-126.353,0,-149.72	0/0:101:100,1:100:3563:1:36:0,-26.8058,-317.158	0/0:19:19,0:19:659:0:0:0,-5.71957,-59.6241	0/1:130:66,64:66:2368:64:2236:-162.366,0,-174.221	0/1:98:47,51:47:1676:51:1820:-134.456,0,-121.626	0/1:199:107,92:107:3778:92:3287:-236.135,0,-280.312	0/1:64:29,35:29:1035:35:1252:-93.7085,0,-74.1841	0/1:103:46,57:46:1647:57:2027:-151.205,0,-117.375	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.862	0/1:129:61,68:61:2179:68:2444:-181.382,0,-157.543	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3519	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.582	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.434	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:82:41,41:41:1453:41:1468:-107.722,0,-106.348	0/1:88:28,60:28:999:60:2126:-165.115,0,-63.7339	0/0:80:80,0:80:2832:0:0:0,-24.0824,-255.114	0/0:108:108,0:108:3833:0:0:0,-32.5112,-345.164
chr01	5857031	.	GAGGA	AAGGA	120931	PASS	AB=0.489151;ABP=6.30857;AC=153;AF=0.81383;AN=188;AO=5719;CIGAR=1X4M;DP=7424;DPB=7424;DPRA=26.5986;EPP=12421.7;EPPR=3570.74;GTI=3;LEN=1;MEANALT=1.58065;MQM=59.8671;MQMR=59.9659;NS=94;NUMALT=1;ODDS=0.0249518;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203605;QR=57725;RO=1643;RPL=0;RPP=12421.7;RPPR=3570.74;RPR=5719;RUN=1;SAF=0;SAP=12421.7;SAR=5719;SRF=0;SRP=3570.74;SRR=1643;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:1,46:1:34:46:1631:-143.689,-11.0852,0	0/1:69:40,28:40:1403:28:1008:-70.2257,0,-105.755	1/1:86:1,85:1:29:85:3048:-271.644,-22.9889,0	1/1:124:0,124:0:0:124:4414:-397.433,-37.3277,0	1/1:29:0,29:0:0:29:1031:-93.1026,-8.72987,0	1/1:38:0,38:0:0:38:1354:-122.16,-11.4391,0	0/1:88:49,39:49:1746:39:1404:-100.169,0,-130.934	1/1:146:0,145:0:0:145:5200:-467.768,-43.6494,0	1/1:73:0,73:0:0:73:2589:-233.258,-21.9752,0	1/1:69:0,69:0:0:69:2449:-220.664,-20.7711,0	1/1:79:0,77:0:0:77:2724:-245.043,-23.1793,0	1/1:80:0,80:0:0:80:2807:-252.598,-24.0824,0	0/1:72:39,32:39:1364:32:1148:-81.8966,0,-101.324	1/1:69:0,69:0:0:69:2466:-222.063,-20.7711,0	0/1:85:45,39:45:1576:39:1390:-99.7519,0,-116.482	1/1:70:0,70:0:0:70:2478:-223.215,-21.0721,0	1/1:54:0,54:0:0:54:1899:-171.184,-16.2556,0	0/1:34:16,18:16:568:18:636:-47.333,0,-41.2172	0/1:55:33,21:33:1151:21:756:-51.7921,0,-87.3573	0/1:196:81,113:81:2811:113:4048:-305.739,0,-194.463	0/1:103:63,38:63:2207:38:1359:-91.8934,0,-168.179	0/1:112:72,40:72:2525:40:1426:-94.9219,0,-193.787	1/1:64:0,63:0:0:63:2249:-202.189,-18.9649,0	1/1:83:7,76:7:252:76:2720:-222.015,-1.95653,0	1/1:67:1,64:1:36:64:2256:-199.701,-16.3285,0	0/1:176:104,71:104:3635:71:2544:-176.163,0,-274.32	1/1:195:0,195:0:0:195:6967:-627.073,-58.7009,0	1/1:33:0,33:0:0:33:1167:-105.314,-9.93399,0	0/1:237:103,134:103:3619:134:4788:-359.73,0,-254.575	1/1:107:0,106:0:0:106:3795:-341.496,-31.9092,0	1/1:71:0,70:0:0:70:2491:-224.164,-21.0721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:28:0,28:0:0:28:995:-89.8549,-8.42884,0	0/0:3:3,0:3:106:0:0:0,-0.90309,-9.88916	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	1/1:23:0,23:0:0:23:815:-73.6704,-6.92369,0	0/1:186:89,96:89:3153:96:3407:-250.934,0,-228.094	1/1:95:0,93:0:0:93:3310:-297.772,-27.9958,0	0/1:59:27,31:27:947:31:1104:-81.9004,0,-67.8022	0/1:16:6,10:6:202:10:360:-27.9052,0,-13.6928	0/1:85:42,41:42:1468:41:1468:-107.09,0,-107.089	1/1:49:0,49:0:0:49:1733:-156.252,-14.7505,0	1/1:98:0,98:0:0:98:3489:-314.219,-29.5009,0	1/1:57:0,57:0:0:57:2048:-184.591,-17.1587,0	1/1:52:1,50:1:35:50:1773:-156.42,-12.1337,0	1/1:59:0,58:0:0:58:2056:-185.058,-17.4597,0	1/1:84:0,84:0:0:84:3005:-270.68,-25.2865,0	0/1:121:60,60:60:2099:60:2139:-156.293,0,-152.696	0/1:93:56,36:56:1952:36:1284:-87.8866,0,-147.977	0/1:101:52,47:52:1855:47:1668:-120.233,0,-137.151	0/1:122:57,65:57:2023:65:2318:-172.152,0,-145.616	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:118:0,118:0:0:118:4188:-377.095,-35.5215,0	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	1/1:11:0,11:0:0:11:396:-35.9467,-3.31133,0	1/1:150:0,149:0:0:149:5309:-477.184,-44.8535,0	1/1:37:0,37:0:0:37:1302:-117.477,-11.1381,0	1/1:9:0,9:0:0:9:307:-27.9591,-2.70927,0	0/1:17:4,13:4:133:13:468:-37.3136,0,-7.18066	1/1:70:0,70:0:0:70:2499:-225.162,-21.0721,0	1/1:135:3,132:3:102:132:4692:-412.692,-31.1224,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:65:0,63:0:0:63:2255:-202.852,-18.9649,0	0/1:117:45,72:45:1586:72:2551:-194.347,0,-107.809	1/1:66:0,61:0:0:61:2188:-196.828,-18.3628,0	1/1:67:1,65:1:36:65:2323:-205.718,-16.6295,0	1/1:119:1,117:1:36:117:4180:-372.808,-32.2582,0	1/1:87:0,87:0:0:87:3093:-278.597,-26.1896,0	1/1:42:0,42:0:0:42:1500:-135.293,-12.6433,0	1/1:64:0,64:0:0:64:2287:-206.091,-19.2659,0	1/1:70:0,69:0:0:69:2432:-218.875,-20.7711,0	1/1:19:0,18:0:0:18:648:-58.3677,-5.41854,0	0/1:121:51,69:51:1796:69:2460:-185.283,0,-125.552	0/1:71:33,37:33:1140:37:1332:-98.8288,0,-81.5497	1/1:106:0,106:0:0:106:3747:-337.126,-31.9092,0	1/1:165:0,164:0:0:164:5847:-525.968,-49.3689,0	0/1:85:46,38:46:1615:38:1368:-97.8525,0,-120.071	1/1:98:1,96:1:35:96:3440:-306.252,-26.0262,0	1/1:13:1,12:1:35:12:432:-35.7226,-0.414761,0	0/1:94:48,46:48:1709:46:1634:-119.05,0,-125.799	0/1:100:46,54:46:1594:54:1925:-143.417,0,-113.644	0/1:138:63,73:63:2215:73:2609:-193.756,0,-158.315	0/1:73:37,36:37:1318:36:1275:-93.0709,0,-96.947	0/1:73:36,37:36:1285:37:1306:-95.851,0,-93.9788	1/1:64:0,63:0:0:63:2243:-201.566,-18.9649,0	0/1:105:60,44:60:2103:44:1539:-107.109,0,-157.872	0/1:28:10,17:10:350:17:612:-47.0401,0,-23.4593	1/1:79:0,79:0:0:79:2758:-248.46,-23.7814,0	1/1:74:0,74:0:0:74:2625:-236.497,-22.2762,0	1/1:79:0,78:0:0:78:2759:-248.278,-23.4803,0	0/1:123:55,66:55:1938:66:2340:-174.117,0,-137.961	0/1:71:54,17:54:1903:17:597:-32.683,0,-150.174	1/1:100:0,98:0:0:98:3476:-312.731,-29.5009,0	1/1:89:0,86:0:0:86:3065:-275.821,-25.8886,0
chr01	5857155	.	TCG	TCA	126158	PASS	AB=0.52876;ABP=23.1199;AC=154;AF=0.827957;AN=186;AO=5744;CIGAR=2M1X;DP=7085;DPB=7085;DPRA=0;EPP=12028.4;EPPR=2789.54;GTI=0;LEN=1;MEANALT=1.21505;MQM=59.4561;MQMR=59.5322;NS=93;NUMALT=1;ODDS=1.21946;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205024;QR=45592;RO=1319;RPL=5693;RPP=12036.9;RPPR=2789.54;RPR=51;RUN=1;SAF=1;SAP=12467.3;SAR=5743;SRF=0;SRP=2867.18;SRR=1319;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51:0:0:51:1827:-164.434,-15.3525,0	0/1:55:28,27:28:959:27:968:-70.8523,0,-70.0446	1/1:151:0,151:0:0:151:5391:-485.274,-45.4555,0	1/1:146:0,144:0:0:144:5150:-463.32,-43.3483,0	1/1:38:1,37:1:36:37:1324:-115.861,-7.84087,0	1/1:15:0,15:0:0:15:531:-48.121,-4.51545,0	0/1:29:14,15:14:496:15:536:-39.8403,0,-36.2448	1/1:167:0,167:0:0:167:5959:-536.203,-50.272,0	1/1:89:0,89:0:0:89:3156:-283.844,-26.7917,0	1/1:88:0,88:0:0:88:3143:-282.151,-26.4906,0	1/1:32:0,32:0:0:32:1139:-102.794,-9.63296,0	1/1:107:0,107:0:0:107:3827:-344.464,-32.2102,0	0/1:82:45,36:45:1589:36:1288:-91.5311,0,-118.621	1/1:40:0,39:0:0:39:1395:-125.598,-11.7402,0	0/1:61:30,31:30:1048:31:1106:-81.485,0,-76.2604	1/1:47:0,47:0:0:47:1662:-149.862,-14.1484,0	1/1:23:0,23:0:0:23:828:-74.8265,-6.92369,0	0/1:23:13,10:13:441:10:360:-25.8206,0,-33.0889	0/1:23:12,11:12:430:11:396:-29.0053,0,-32.1164	0/1:115:56,59:56:1928:59:2107:-155.179,0,-139.152	0/1:144:62,82:62:2124:82:2922:-219.806,0,-148.042	0/1:95:58,37:58:2022:37:1316:-90.144,0,-153.622	1/1:115:0,114:0:0:114:4070:-366.098,-34.3174,0	1/1:62:2,60:2:64:60:2114:-184.34,-12.5858,0	1/1:101:0,100:0:0:100:3574:-321.401,-30.103,0	0/1:193:91,101:91:3133:101:3616:-267.488,0,-224.032	1/1:199:0,199:0:0:199:7094:-637.893,-59.905,0	1/1:33:0,33:0:0:33:1188:-107.151,-9.93399,0	0/1:181:100,81:100:3435:81:2881:-205.039,0,-254.874	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	1/1:65:0,65:0:0:65:2324:-209.413,-19.567,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:27:0,27:0:0:27:960:-86.648,-8.12781,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:18:0,18:0:0:18:648:-58.6296,-5.41854,0	1/1:30:0,30:0:0:30:1080:-97.4672,-9.0309,0	0/1:212:96,115:96:3350:115:4102:-305.402,0,-237.833	1/1:86:0,86:0:0:86:3066:-276.16,-25.8886,0	0/1:35:16,19:16:562:19:680:-50.9849,0,-40.3732	.:.:.:.:.:.:.:.	0/1:63:35,27:35:1207:27:958:-67.2152,0,-90.0133	1/1:30:0,30:0:0:30:1057:-95.4392,-9.0309,0	1/1:168:1,166:1:36:166:5894:-526.547,-47.0331,0	1/1:63:0,63:0:0:63:2252:-202.937,-18.9649,0	1/1:52:0,51:0:0:51:1798:-161.886,-15.3525,0	1/1:54:0,54:0:0:54:1936:-174.512,-16.2556,0	1/1:100:2,98:2:72:98:3482:-306.678,-23.2663,0	0/1:146:46,99:46:1569:99:3556:-276.165,0,-97.5477	0/1:91:39,51:39:1353:51:1827:-137.276,0,-94.6594	0/1:76:31,45:31:1078:45:1620:-123.212,0,-74.345	0/1:46:24,22:24:815:22:775:-56.222,0,-59.8101	1/1:5:0,5:0:0:5:180:-16.5474,-1.50515,0	1/1:140:0,140:0:0:140:5008:-450.535,-42.1442,0	1/1:34:0,34:0:0:34:1220:-110.105,-10.235,0	1/1:3:0,3:0:0:3:108:-10.0388,-0.90309,0	1/1:88:0,88:0:0:88:3150:-283.696,-26.4906,0	1/1:28:0,26:0:0:26:924:-83.1094,-7.82678,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:10:7,3:7:247:3:108:-7.06487,0,-19.5629	1/1:88:0,88:0:0:88:3142:-282.985,-26.4906,0	1/1:65:0,65:0:0:65:2319:-208.706,-19.567,0	1/1:13:0,13:0:0:13:464:-42.0952,-3.91339,0	1/1:153:0,152:0:0:152:5429:-488.348,-45.7566,0	0/1:118:35,83:35:1214:83:2959:-231.015,0,-74.0167	1/1:74:0,74:0:0:74:2643:-238.075,-22.2762,0	1/1:105:1,103:1:36:103:3675:-326.102,-28.02,0	1/1:142:1,140:1:36:140:4985:-445.023,-39.1667,0	1/1:142:1,140:1:36:140:5000:-446.597,-39.1414,0	1/1:33:0,33:0:0:33:1184:-106.864,-9.93399,0	1/1:48:0,48:0:0:48:1708:-153.946,-14.4494,0	1/1:36:0,36:0:0:36:1281:-115.5,-10.8371,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:46:17,29:17:573:29:1031:-79.2096,0,-38.0413	0/1:116:55,61:55:1898:61:2184:-161.884,0,-136.108	1/1:86:0,86:0:0:86:3084:-277.767,-25.8886,0	1/1:176:0,176:0:0:176:6283:-565.535,-52.9813,0	0/1:58:29,29:29:974:29:1044:-76.7798,0,-70.4557	1/1:94:0,94:0:0:94:3351:-301.669,-28.2968,0	1/1:16:0,16:0:0:16:576:-52.1668,-4.81648,0	0/1:101:38,63:38:1297:63:2251:-172.422,0,-86.6204	0/1:70:32,38:32:1092:38:1336:-99.1208,0,-77.4878	0/1:176:71,104:71:2425:104:3700:-280.122,0,-165.455	0/1:40:26,14:26:899:14:504:-33.6476,0,-69.1719	0/1:68:33,34:33:1164:34:1224:-90.0265,0,-84.6453	1/1:39:0,39:0:0:39:1392:-125.563,-11.7402,0	0/1:154:78,75:78:2706:75:2683:-195.393,0,-197.468	0/1:26:15,11:15:534:11:392:-27.7933,0,-40.5675	1/1:59:0,59:0:0:59:2092:-188.393,-17.7608,0	1/1:66:0,66:0:0:66:2364:-212.964,-19.868,0	1/1:26:0,26:0:0:26:932:-84.1907,-7.82678,0	0/1:70:29,41:29:1027:41:1476:-112.051,0,-71.6255	0/1:76:49,27:49:1687:27:947:-62.6537,0,-129.226	1/1:119:0,119:0:0:119:4265:-383.998,-35.8226,0	1/1:123:0,123:0:0:123:4416:-397.504,-37.0267,0
chr01	5857158	.	A	T	20522.9	PASS	AB=0.459559;ABP=41.6497;AC=32;AF=0.172043;AN=186;AO=1264;CIGAR=1X;DP=6967;DPB=6967;DPRA=1.47861;EPP=2661.58;EPPR=11962.6;GTI=0;LEN=1;MEANALT=1.04651;MQM=59.3964;MQMR=59.4753;NS=93;NUMALT=1;ODDS=2.76609;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44842;QR=203892;RO=5698;RPL=1254;RPP=2661.58;RPPR=11962.6;RPR=10;RUN=1;SAF=0;SAP=2747.75;SAR=1264;SRF=0;SRP=12376.1;SRR=5698;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.475	0/1:54:29,25:29:1040:25:884:-63.6051,0,-77.6303	0/0:146:146,0:146:5202:0:0:0,-43.9504,-468.3	0/0:149:149,0:149:5331:0:0:0,-44.8535,-479.87	0/0:37:36,1:36:1287:1:36:0,-7.53983,-112.526	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5739	0/1:29:16,13:16:576:13:464:-33.3676,0,-43.4381	0/0:167:166,0:166:5928:0:0:0,-49.971,-533.185	0/0:87:87,0:87:3084:0:0:0,-26.1896,-277.634	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.246	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.547	0/0:103:103,0:103:3675:0:0:0,-31.0061,-330.657	0/1:80:36,44:36:1296:44:1573:-117.764,0,-92.8439	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:57:29,28:29:1044:28:996:-72.7916,0,-77.1099	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.077	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7042	0/1:23:10,13:10:360:13:460:-34.8035,0,-25.8206	0/1:24:11,13:11:396:13:468:-35.2064,0,-28.7042	0/1:114:58,55:58:2080:55:1906:-137.328,0,-153.088	0/1:142:80,62:80:2872:62:2179:-153.609,0,-215.863	0/1:91:36,55:36:1292:55:1953:-148.614,0,-89.19	0/0:112:112,0:112:3982:0:0:0,-33.7154,-358.549	0/0:58:56,2:56:1983:2:72:0,-10.623,-171.904	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.43	0/1:182:102,80:102:3652:80:2819:-199.096,0,-274.05	0/0:203:202,1:202:7220:1:25:0,-58.6108,-646.721	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.151	0/1:174:76,98:76:2724:98:3502:-263.005,0,-193.021	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.362	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.8424	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6296	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5161	0/1:206:111,95:111:3980:95:3416:-245.622,0,-296.291	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.737	0/1:35:19,16:19:680:16:564:-40.5543,0,-50.9849	.:.:.:.:.:.:.:.	0/1:56:25,31:25:896:31:1089:-81.4589,0,-64.0722	0/0:31:30,1:30:1076:1:25:0,-6.83279,-94.6537	0/0:170:168,2:168:6027:2:59:0,-45.5723,-535.786	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.296	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.03	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.872	0/0:100:98,2:98:3481:2:72:0,-23.2663,-306.378	0/1:143:100,41:100:3567:41:1468:-89.6013,0,-278.305	0/1:89:51,38:51:1832:38:1345:-94.5231,0,-138.318	0/1:74:44,30:44:1580:30:1076:-74.7669,0,-120.207	0/1:46:22,24:22:792:24:864:-64.2247,0,-57.7565	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5474	0/0:136:135,1:135:4844:1:25:0,-38.4418,-433.409	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.745	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.66639	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.173	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4189	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.353	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.187	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4573	0/0:153:152,0:152:5451:0:0:0,-45.7566,-490.343	0/1:118:84,34:84:3011:34:1212:-73.8437,0,-234.329	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.287	0/0:102:101,1:101:3602:1:36:0,-27.1263,-319.479	0/0:140:139,1:139:4978:1:36:0,-38.551,-443.751	0/0:146:145,1:145:5168:1:36:0,-40.3521,-461.517	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.907	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.909	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.647	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:43:28,15:28:1004:15:525:-34.6338,0,-77.6705	0/1:111:63,48:63:2255:48:1689:-118.82,0,-169.754	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.582	0/0:177:177,0:177:6347:0:0:0,-53.2823,-571.19	0/1:57:31,26:31:1112:26:924:-66.2661,0,-83.1974	0/0:92:92,0:92:3288:0:0:0,-27.6948,-295.926	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5913	0/1:98:61,37:61:2188:37:1305:-88.2485,0,-167.664	0/1:67:37,30:37:1316:30:1059:-75.4259,0,-98.0566	0/1:172:105,67:105:3734:67:2380:-162.637,0,-284.448	0/1:40:15,25:15:527:25:896:-68.9066,0,-35.7097	0/1:67:34,33:34:1220:33:1169:-85.3468,0,-89.9194	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.236	0/1:151:74,77:74:2634:77:2732:-200.652,0,-191.836	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/0:57:56,1:56:2008:1:25:0,-14.6918,-178.399	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.323	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1888	0/1:73:43,30:43:1528:30:1080:-75.4931,0,-115.825	0/1:71:25,46:25:892:46:1646:-127.034,0,-59.2147	0/0:119:119,0:119:4267:0:0:0,-35.8226,-384.179	0/0:126:126,0:126:4515:0:0:0,-37.9298,-406.417
chr01	5874979	.	T	A	26333.1	PASS	AB=0.484944;ABP=9.28768;AC=37;AF=0.198925;AN=186;AO=1593;CIGAR=1X;DP=7052;DPB=7052;DPRA=1.61319;EPP=3418.87;EPPR=11822.4;GTI=4;LEN=1;MEANALT=1;MQM=59.9931;MQMR=59.9767;NS=93;NUMALT=1;ODDS=0.235081;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57064;QR=195500;RO=5459;RPL=1590;RPP=3436.16;RPPR=11580.8;RPR=3;RUN=1;SAF=8;SAP=3393.03;SAR=1585;SRF=36;SRP=11546.4;SRR=5423;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.729	0/1:34:16,18:16:576:18:644:-48.0556,0,-41.94	0/0:106:106,0:106:3777:0:0:0,-31.9092,-340.129	0/0:165:163,2:163:5829:2:72:0,-42.8332,-517.885	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:19:17,2:17:612:2:72:-1.11715,0,-49.6939	0/1:30:17,13:17:608:13:460:-32.7045,0,-46.0211	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/0:77:75,2:75:2684:2:72:0,-16.3426,-234.96	0/0:82:82,0:82:2937:0:0:0,-24.6845,-264.562	0/0:24:22,2:22:788:2:68:0,-0.767011,-64.7871	0/0:124:123,1:123:4424:1:36:0,-33.7294,-394.731	0/1:85:45,40:45:1616:40:1440:-104.31,0,-120.142	0/0:37:36,1:36:1296:1:36:0,-7.53983,-113.346	0/1:82:38,44:38:1368:44:1584:-118.167,0,-98.7364	0/0:47:46,1:46:1656:1:36:0,-10.5501,-145.73	0/0:23:23,0:23:798:0:0:0,-6.92369,-72.1341	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	0/1:27:19,8:19:684:8:288:-18.1396,0,-53.7625	0/1:136:83,53:83:2965:53:1908:-131.057,0,-226.141	0/1:195:115,80:115:4112:80:2860:-198.937,0,-311.565	0/1:36:21,15:21:748:15:527:-36.9231,0,-56.8082	0/0:71:70,1:70:2497:1:36:0,-17.7749,-221.383	0/1:46:41,5:41:1476:5:176:-2.33764,0,-119.289	0/0:128:128,0:128:4558:0:0:0,-38.5318,-410.377	0/1:333:145,188:145:5192:188:6740:-506.43,0,-367.176	0/0:147:145,2:145:5150:2:72:0,-37.4147,-456.676	0/0:41:40,1:40:1440:1:36:0,-8.74395,-126.299	0/1:198:92,106:92:3296:106:3781:-280.881,0,-237.255	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	.:.:.:.:.:.:.:.	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:232:116,116:116:4164:116:4156:-304.384,0,-305.103	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.139	0/1:42:18,24:18:644:24:860:-65.0786,0,-45.6473	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:69:39,30:39:1396:30:1076:-76.3818,0,-105.168	0/0:31:29,2:29:1044:2:68:0,-2.87422,-87.8171	0/0:134:134,0:134:4797:0:0:0,-40.338,-431.884	0/0:131:128,3:128:4608:3:108:0,-29.3598,-404.72	0/0:72:71,1:71:2548:1:36:0,-18.0759,-225.961	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/0:37:36,1:36:1273:1:36:0,-7.53983,-111.273	0/1:154:80,74:80:2868:74:2652:-192.568,0,-211.998	0/1:78:48,30:48:1728:30:1072:-73.3121,0,-132.325	0/1:57:25,32:25:900:32:1152:-86.8314,0,-64.1623	0/1:88:44,44:44:1576:44:1572:-115.281,0,-115.641	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:45:43,2:43:1540:2:72:0,-6.70963,-132.056	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.475	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:78:76,2:76:2732:2:64:0,-17.4016,-240.044	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:196:195,1:195:6989:1:36:0,-55.4036,-625.472	0/1:134:67,67:67:2408:67:2404:-176.278,0,-176.638	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:159:157,2:157:5620:2:72:0,-41.027,-499.085	0/0:142:141,1:141:5034:1:36:0,-39.148,-449.605	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:42:40,2:40:1432:2:72:0,-5.80654,-122.341	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:85:52,33:52:1868:33:1188:-81.641,0,-142.812	0/1:92:45,47:45:1601:47:1688:-124.512,0,-116.683	0/0:69:68,1:68:2432:1:36:0,-17.1728,-215.537	0/0:122:121,1:121:4340:1:36:0,-33.1274,-387.176	0/1:59:33,26:33:1176:26:936:-66.7987,0,-88.387	0/0:80:75,5:75:2685:5:180:0,-7.53033,-225.341	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:59:21,38:21:752:38:1368:-105.66,0,-50.2455	0/1:74:28,46:28:1004:46:1640:-125.609,0,-68.3996	0/1:201:112,89:112:4005:89:3176:-225.558,0,-300.131	0/1:69:39,30:39:1396:30:1072:-76.0214,0,-105.168	0/1:61:29,32:29:1044:32:1140:-84.5464,0,-75.912	0/0:47:45,2:45:1616:2:72:0,-7.31169,-138.893	0/1:188:98,90:98:3512:90:3228:-234.148,0,-259.696	0/1:40:19,21:19:684:21:756:-56.3256,0,-49.8491	0/0:81:79,2:79:2828:2:72:0,-17.5467,-247.922	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.8612	0/1:55:25,30:25:896:30:1080:-80.9566,0,-64.4037	0/1:85:25,60:25:900:60:2156:-168.719,0,-55.7335	0/0:148:148,0:148:5274:0:0:0,-44.5524,-474.795	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.732
chr01	5934494	.	G	A	101817	PASS	AB=0.503168;ABP=3.2442;AC=155;AF=0.824468;AN=188;AO=4764;CIGAR=1X;DP=6107;DPB=6107;DPRA=0;EPP=10347.9;EPPR=2912.78;GTI=4;LEN=1;MEANALT=1.03191;MQM=59.9784;MQMR=59.9687;NS=94;NUMALT=1;ODDS=0.941194;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170627;QR=47437;RO=1340;RPL=4764;RPP=10347.9;RPPR=2912.78;RPR=0;RUN=1;SAF=4764;SAP=10347.9;SAR=0;SRF=1340;SRP=2912.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:79:37,42:37:1309:42:1504:-111.873,0,-94.3282	1/1:46:0,46:0:0:46:1656:-149.312,-13.8474,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:51:27,24:27:972:24:860:-62.3611,0,-72.4372	1/1:72:0,72:0:0:72:2567:-231.28,-21.6742,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:52:0,52:0:0:52:1850:-166.779,-15.6536,0	1/1:153:0,153:0:0:153:5471:-492.518,-46.0576,0	1/1:61:0,61:0:0:61:2171:-195.656,-18.3628,0	0/1:86:36,50:36:1264:50:1784:-134.954,0,-88.1616	1/1:136:1,135:1:36:135:4809:-429.37,-37.3418,0	0/1:57:29,28:29:1032:28:1000:-73.1567,0,-76.0348	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:141:0,141:0:0:141:5068:-456.262,-42.4452,0	0/1:83:41,41:41:1451:41:1472:-107.732,0,-105.841	0/1:49:24,25:24:852:25:896:-66.2099,0,-62.2499	0/1:71:25,46:25:896:46:1647:-127.145,0,-59.5872	0/1:55:29,26:29:1040:26:936:-68.0028,0,-77.3577	0/1:32:21,11:21:741:11:396:-26.3498,0,-57.3786	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:42:1,41:1:36:41:1476:-129.538,-9.04499,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:144:66,77:66:2347:77:2748:-204.153,0,-168.082	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:34:0,34:0:0:34:1212:-109.378,-10.235,0	0/1:75:28,47:28:988:47:1688:-129.63,0,-66.6567	1/1:119:1,118:1:36:118:4236:-377.82,-32.2243,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:233:113,120:113:3932:120:4308:-317.754,0,-283.933	1/1:87:0,87:0:0:87:3116:-280.65,-26.1896,0	0/1:102:45,57:45:1557:57:2032:-152.447,0,-109.711	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:68:22,46:22:769:46:1656:-128.85,0,-49.0586	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:96:0,96:0:0:96:3423:-308.284,-28.8989,0	1/1:92:0,92:0:0:92:3295:-296.768,-27.6948,0	1/1:31:1,30:1:36:30:1071:-93.1031,-5.73366,0	1/1:77:0,77:0:0:77:2760:-248.641,-23.1793,0	0/1:94:51,43:51:1808:43:1540:-110.596,0,-134.702	0/1:56:36,20:36:1279:20:720:-48.2702,0,-98.5548	0/1:129:58,70:58:2048:70:2512:-187.437,0,-145.698	0/1:47:27,20:27:972:20:716:-50.6193,0,-73.6495	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:192:3,189:3:108:189:6756:-598.037,-47.7226,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:96:0,96:0:0:96:3432:-309.094,-28.8989,0	0/1:135:70,65:70:2496:65:2315:-167.971,0,-184.254	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	1/1:65:0,65:0:0:65:2336:-210.491,-19.567,0	1/1:42:0,42:0:0:42:1489:-134.303,-12.6433,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	1/1:113:0,113:0:0:113:4056:-365.226,-34.0164,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:49:25,24:25:892:24:860:-62.9714,0,-65.8492	0/1:58:36,22:36:1292:22:792:-54.1459,0,-99.124	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:107:0,107:0:0:107:3848:-346.514,-32.2102,0	0/1:53:30,23:30:1076:23:812:-57.4463,0,-81.1983	1/1:92:1,91:1:36:91:3272:-291.101,-24.0965,0	0/1:5:1,4:1:36:4:144:-11.7191,0,-2.09312	0/1:52:23,29:23:828:29:1044:-78.6212,0,-59.1906	0/1:47:19,28:19:680:28:1008:-76.8879,0,-47.3726	0/1:84:38,46:38:1351:46:1656:-124.042,0,-96.6031	0/1:139:70,69:70:2465:69:2476:-181.25,0,-180.261	0/1:62:33,29:33:1157:29:1036:-74.8901,0,-85.7704	1/1:96:0,96:0:0:96:3452:-310.891,-28.8989,0	0/1:173:84,89:84:2972:89:3179:-234.256,0,-215.633	0/1:44:27,17:27:952:17:604:-41.4453,0,-72.7499	1/1:93:1,92:1:36:92:3292:-292.901,-24.3975,0	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:179:100,79:100:3515:79:2832:-201.234,0,-262.681	0/1:78:52,26:52:1856:26:928:-60.3579,0,-143.839	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:123:1,122:1:36:122:4364:-389.336,-33.4284,0
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chr01	6192166	.	C	T	29807	PASS	AB=0.534905;ABP=38.0275;AC=34;AF=0.182796;AN=186;AO=1780;CIGAR=1X;DP=7310;DPB=7310;DPRA=1.54987;EPP=3868.23;EPPR=12004.7;GTI=3;LEN=1;MEANALT=1.02632;MQM=49.0101;MQMR=34.1057;NS=93;NUMALT=1;ODDS=0.204683;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63792;QR=198031;RO=5527;RPL=0;RPP=3868.23;RPPR=12004.7;RPR=1780;RUN=1;SAF=1780;SAP=3868.23;SAR=0;SRF=5527;SRP=12004.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1792:0:0:0,-15.0515,-143.972	0/1:110:54,56:54:1944:56:2001:-145.926,0,-122.947	0/0:75:75,0:75:2688:0:0:0,-22.5772,-218.769	0/0:105:105,0:105:3764:0:0:0,-31.6081,-300.319	0/0:19:19,0:19:684:0:0:0,-5.71957,-54.8801	0/0:55:54,1:54:1928:1:36:0,-14.3735,-153.074	0/1:64:26,38:26:924:38:1361:-101.164,0,-54.2977	0/0:85:85,0:85:3048:0:0:0,-25.5875,-243.222	0/0:72:72,0:72:2558:0:0:0,-21.6742,-203.389	0/0:91:91,0:91:3264:0:0:0,-27.3937,-263.827	0/0:51:51,0:51:1804:0:0:0,-15.3525,-145.474	0/0:79:79,0:79:2836:0:0:0,-23.7814,-228.98	0/1:63:26,37:26:936:37:1332:-99.4922,0,-54.5207	0/0:97:97,0:97:3484:0:0:0,-29.1999,-274.762	0/1:53:32,21:32:1133:21:756:-51.8664,0,-73.8013	0/0:36:36,0:36:1292:0:0:0,-10.8371,-100.642	0/0:70:70,0:70:2512:0:0:0,-21.0721,-200.08	0/1:40:21,19:21:752:19:684:-49.5028,0,-48.9542	0/1:25:14,11:14:504:11:396:-27.9487,0,-33.7005	0/1:164:67,97:67:2408:97:3454:-259.386,0,-139.864	0/1:99:48,51:48:1728:51:1824:-133.436,0,-108.222	0/1:91:26,65:26:924:65:2329:-180.549,0,-44.6236	0/0:78:78,0:78:2788:0:0:0,-23.4803,-225.114	0/0:139:135,4:135:4832:4:144:0,-28.5732,-364.567	0/0:56:56,0:56:2016:0:0:0,-16.8577,-157.563	0/1:361:174,187:174:6236:187:6701:-486.825,0,-390.109	0/0:130:130,0:130:4640:0:0:0,-39.1339,-365.589	0/0:38:38,0:38:1364:0:0:0,-11.4391,-108.506	0/1:123:63,59:63:2264:59:2105:-149.93,0,-146.287	0/0:146:146,0:146:5232:0:0:0,-43.9504,-414.043	0/0:68:68,0:68:2429:0:0:0,-20.47,-196.003	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.6631	0/0:7:7,0:7:252:0:0:0,-2.10721,-20.4543	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	0/0:13:13,0:13:460:0:0:0,-3.91339,-37.9007	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.697	0/1:190:91,99:91:3255:99:3549:-258.639,0,-202.568	0/0:171:171,0:171:6136:0:0:0,-51.4761,-481.476	0/1:48:27,21:27:972:21:756:-53.2354,0,-63.7962	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.18762	0/1:110:49,61:49:1760:61:2192:-163.069,0,-105.269	0/0:17:17,0:17:612:0:0:0,-5.11751,-48.1795	0/0:78:78,0:78:2800:0:0:0,-23.4803,-219.361	0/0:58:58,0:58:2084:0:0:0,-17.4597,-167.604	0/0:53:53,0:53:1908:0:0:0,-15.9546,-152.29	0/0:88:88,0:88:3164:0:0:0,-26.4906,-254.236	0/0:104:103,1:103:3674:1:36:0,-29.124,-294.715	0/1:107:42,65:42:1504:65:2328:-175.423,0,-86.4751	0/1:122:38,84:38:1364:84:3006:-231.795,0,-73.9565	0/1:59:34,25:34:1216:25:896:-62.0853,0,-81.4945	0/1:113:40,73:40:1440:73:2624:-200.394,0,-82.1	.:.:.:.:.:.:.:.	0/0:155:155,0:155:5572:0:0:0,-46.6596,-445.841	0/0:17:17,0:17:612:0:0:0,-5.11751,-49.8173	0/0:11:11,0:11:392:0:0:0,-3.31133,-29.5404	0/0:69:69,0:69:2460:0:0:0,-20.7711,-194.148	0/0:19:19,0:19:684:0:0:0,-5.71957,-54.8186	0/0:8:8,0:8:288:0:0:0,-2.40824,-22.727	0/1:25:14,11:14:504:11:396:-28.3047,0,-33.7005	0/0:40:39,1:39:1400:1:36:0,-8.45472,-107.563	0/0:134:134,0:134:4799:0:0:0,-40.338,-380.767	0/0:16:16,0:16:572:0:0:0,-4.81648,-46.8677	0/0:146:145,0:145:5212:0:0:0,-43.6493,-415.592	0/1:332:170,162:170:6088:162:5801:-417.967,0,-386.899	0/0:59:59,0:59:2116:0:0:0,-17.7608,-167.381	0/0:21:21,0:21:748:0:0:0,-6.32163,-57.4273	0/0:132:130,2:130:4655:2:72:0,-34.2581,-367.877	0/0:97:97,0:97:3472:0:0:0,-29.1999,-280.196	0/0:21:21,0:21:756:0:0:0,-6.32163,-59.6561	0/0:84:84,0:84:3001:0:0:0,-25.2865,-240.521	0/0:99:99,0:99:3552:0:0:0,-29.802,-284.118	0/0:23:23,0:23:824:0:0:0,-6.92369,-66.3576	0/1:73:37,36:37:1328:36:1265:-90.6088,0,-83.297	0/1:64:31,33:31:1116:33:1184:-86.1197,0,-70.5557	0/0:141:141,0:141:5064:0:0:0,-42.4452,-399.018	0/0:88:88,0:88:3145:0:0:0,-26.4906,-253.843	0/1:85:36,49:36:1288:49:1756:-130.822,0,-73.9813	0/0:69:69,0:69:2453:0:0:0,-20.7711,-197.684	0/0:11:11,0:11:396:0:0:0,-3.31133,-32.4616	0/1:55:22,33:22:792:33:1188:-90.3066,0,-45.0599	0/1:39:24,15:24:864:15:540:-36.8184,0,-58.7015	0/1:152:84,68:84:3008:68:2444:-173.175,0,-191.287	0/1:120:52,68:52:1863:68:2440:-180.412,0,-112.456	0/1:39:19,20:19:669:20:720:-52.856,0,-42.4186	0/0:88:88,0:88:3140:0:0:0,-26.4906,-251.128	0/1:142:79,63:79:2840:63:2264:-158.069,0,-181.487	0/1:50:18,32:18:648:32:1148:-87.6656,0,-36.8983	0/0:78:77,0:77:2764:0:0:0,-23.1793,-221.656	0/0:74:74,0:74:2660:0:0:0,-22.2762,-215.623	0/0:38:38,0:38:1368:0:0:0,-11.4391,-106.495	0/1:113:53,60:53:1888:60:2160:-159.051,0,-117.383	0/1:78:27,51:27:959:51:1832:-140.724,0,-52.6242	0/0:39:39,0:39:1395:0:0:0,-11.7402,-113.661	0/0:80:80,0:80:2863:0:0:0,-24.0824,-232.004
chr01	6192312	.	A	C	130028	PASS	AB=0.472896;ABP=20.9025;AC=151;AF=0.811828;AN=186;AO=4801;CIGAR=1X;DP=6304;DPB=6304;DPRA=17.1196;EPP=270.48;EPPR=122.014;GTI=5;LEN=1;MEANALT=1;MQM=59.7288;MQMR=59.9454;NS=93;NUMALT=1;ODDS=1.07618;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171876;QR=53797;RO=1503;RPL=2016;RPP=270.48;RPPR=122.014;RPR=2785;RUN=1;SAF=0;SAP=10428.2;SAR=4801;SRF=0;SRP=3266.73;SRR=1503;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:68:0,68:0:0:68:2436:-219.478,-20.47,0	0/1:61:33,28:33:1171:28:1008:-72.6598,0,-87.3338	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:107:0,107:0:0:107:3848:-346.138,-32.2102,0	1/1:68:0,68:0:0:68:2436:-219.486,-20.47,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:60:32,28:32:1144:28:1008:-72.9415,0,-85.2077	1/1:88:1,87:1:36:87:3108:-276.341,-22.8924,0	1/1:76:1,75:1:36:75:2680:-237.795,-19.28,0	1/1:32:0,32:0:0:32:1148:-103.555,-9.63296,0	1/1:29:0,29:0:0:29:1044:-94.2678,-8.72987,0	1/1:80:0,80:0:0:80:2830:-254.884,-24.0824,0	0/1:54:22,32:22:788:32:1139:-86.5188,0,-54.9892	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:58:24,34:24:864:34:1209:-91.649,0,-60.5364	1/1:43:0,43:0:0:43:1535:-138.433,-12.9443,0	1/1:14:0,14:0:0:14:500:-45.328,-4.21442,0	0/1:22:13,9:13:460:9:324:-22.8832,0,-35.1127	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:103:52,51:52:1864:51:1820:-132.986,0,-137.033	0/1:105:63,42:63:2264:42:1504:-104.045,0,-172.224	0/1:100:65,35:65:2310:35:1256:-83.2401,0,-178.057	1/1:70:0,70:0:0:70:2507:-225.247,-21.0721,0	1/1:73:4,69:4:144:69:2468:-209.053,-8.66157,0	1/1:91:0,91:0:0:91:3268:-294.261,-27.3937,0	0/1:195:99,96:99:3548:96:3432:-250.392,0,-260.827	1/1:194:0,194:0:0:194:6939:-624.476,-58.3998,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:158:107,51:107:3825:51:1827:-117.143,0,-296.883	1/1:115:6,109:6:216:109:3916:-332.827,-14.8279,0	1/1:67:1,66:1:36:66:2372:-210.139,-16.5707,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:165:85,80:85:3047:80:2842:-206.345,0,-224.789	1/1:179:0,179:0:0:179:6406:-576.556,-53.8844,0	0/1:34:17,17:17:612:17:612:-45.1702,0,-45.1784	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:89:54,35:54:1931:35:1260:-86.9092,0,-147.274	1/1:25:0,25:0:0:25:900:-81.3164,-7.52575,0	1/1:150:1,149:1:36:149:5325:-475.631,-41.5562,0	1/1:33:0,33:0:0:33:1188:-107.226,-9.93399,0	1/1:26:0,26:0:0:26:932:-84.1942,-7.82678,0	1/1:87:0,87:0:0:87:3071:-276.613,-26.1896,0	1/1:108:0,108:0:0:108:3859:-347.439,-32.5112,0	0/1:154:82,72:82:2952:72:2567:-184.916,0,-219.546	0/1:75:46,29:46:1656:29:1040:-71.3371,0,-126.749	0/1:58:32,26:32:1148:26:936:-67.0974,0,-86.1701	0/1:113:52,61:52:1864:61:2192:-163.528,0,-134.023	.:.:.:.:.:.:.:.	1/1:112:0,112:0:0:112:4016:-361.62,-33.7154,0	1/1:66:0,66:0:0:66:2358:-212.471,-19.868,0	1/1:13:0,13:0:0:13:468:-42.4514,-3.91339,0	1/1:76:0,76:0:0:76:2712:-244.32,-22.8783,0	1/1:48:0,48:0:0:48:1728:-155.173,-14.4494,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	1/1:59:0,59:0:0:59:2124:-191.419,-17.7608,0	1/1:84:1,83:1:36:83:2984:-265.186,-21.6882,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:97:0,97:0:0:97:3488:-314.129,-29.1999,0	0/1:113:50,63:50:1783:63:2264:-170.001,0,-126.736	1/1:39:0,39:0:0:39:1404:-126.645,-11.7402,0	1/1:38:0,38:0:0:38:1331:-119.919,-11.4391,0	1/1:101:1,100:1:36:100:3584:-319.142,-26.8058,0	1/1:93:1,92:1:36:92:3300:-293.613,-24.3975,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:45:0,45:0:0:45:1603:-144.552,-13.5464,0	1/1:13:0,13:0:0:13:468:-42.4549,-3.91339,0	0/1:177:95,82:95:3389:82:2928:-210.37,0,-251.942	0/1:62:28,34:28:1004:34:1224:-91.7859,0,-72.012	1/1:131:2,129:2:72:129:4618:-408.939,-32.5982,0	1/1:70:0,70:0:0:70:2512:-226.325,-21.0721,0	0/1:124:64,60:64:2291:60:2145:-155.988,0,-169.123	1/1:48:2,46:2:72:46:1652:-142.132,-7.61272,0	1/1:13:0,13:0:0:13:468:-42.4514,-3.91339,0	0/1:96:44,52:44:1584:52:1856:-138.405,0,-113.953	0/1:76:41,35:41:1463:35:1256:-90.467,0,-109.087	0/1:156:76,80:76:2710:80:2870:-211.544,0,-197.182	0/1:52:27,25:27:968:25:900:-65.6651,0,-71.7838	0/1:64:26,38:26:936:38:1360:-103.432,0,-65.2935	1/1:25:0,25:0:0:25:887:-80.1434,-7.52575,0	0/1:103:46,57:46:1644:57:2033:-152.232,0,-117.243	0/1:31:19,12:19:680:12:432:-29.8893,0,-52.1972	1/1:51:0,51:0:0:51:1825:-164.512,-15.3525,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:69:33,36:33:1176:36:1292:-95.8002,0,-85.1856	0/1:50:36,14:36:1281:14:500:-30.2823,0,-100.537	1/1:80:0,80:0:0:80:2880:-259.429,-24.0824,0	1/1:72:0,72:0:0:72:2562:-230.805,-21.6742,0
chr01	6197420	.	A	G	169499	PASS	AB=0.490257;ABP=6.48011;AC=155;AF=0.824468;AN=188;AO=7963;CIGAR=1X;DP=10130;DPB=10130;DPRA=0;EPP=17277.1;EPPR=4706.42;GTI=4;LEN=1;MEANALT=1.01064;MQM=59.9617;MQMR=59.9995;NS=94;NUMALT=1;ODDS=1.68141;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=283228;QR=77185;RO=2166;RPL=7961;RPP=17277.1;RPPR=4706.42;RPR=2;RUN=1;SAF=7963;SAP=17294.4;SAR=0;SRF=2166;SRP=4706.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:63:0,63:0:0:63:2212:-199.342,-18.9649,0	0/1:129:75,54:75:2665:54:1908:-133.162,0,-201.262	1/1:230:0,230:0:0:230:8146:-732.89,-69.2369,0	1/1:270:1,269:1:36:269:9591:-859.417,-77.6798,0	1/1:103:0,103:0:0:103:3666:-330.143,-31.0061,0	1/1:78:0,78:0:0:78:2766:-249.179,-23.4803,0	0/1:105:50,55:50:1761:55:1966:-145.606,0,-127.163	1/1:154:1,153:1:36:153:5433:-485.503,-42.7603,0	1/1:131:1,130:1:36:130:4599:-410.474,-35.8367,0	1/1:89:0,89:0:0:89:3173:-285.794,-26.7917,0	1/1:55:0,55:0:0:55:1951:-175.865,-16.5567,0	1/1:109:0,109:0:0:109:3863:-347.862,-32.8123,0	0/1:56:26,30:26:928:30:1055:-78.4023,0,-66.9806	1/1:68:0,68:0:0:68:2379:-214.365,-20.47,0	0/1:70:35,35:35:1256:35:1252:-91.913,0,-92.2732	1/1:61:0,61:0:0:61:2168:-195.387,-18.3628,0	1/1:88:0,88:0:0:88:3136:-282.464,-26.4906,0	0/1:79:44,35:44:1572:35:1252:-89.2037,0,-117.99	0/1:42:24,18:24:860:18:625:-43.9292,0,-65.0786	0/1:110:62,48:62:2182:48:1707:-120.802,0,-163.529	0/1:132:67,65:67:2384:65:2298:-167.342,0,-175.082	0/1:104:70,34:70:2497:34:1224:-79.1595,0,-193.674	1/1:99:0,99:0:0:99:3521:-317.014,-29.802,0	1/1:295:14,281:14:500:281:10034:-857.661,-43.4677,0	1/1:56:0,56:0:0:56:2006:-180.813,-16.8577,0	0/1:303:130,172:130:4637:172:6097:-457.559,0,-326.222	1/1:173:0,173:0:0:173:6176:-555.621,-52.0782,0	1/1:51:0,51:0:0:51:1811:-163.271,-15.3525,0	0/1:271:125,146:125:4453:146:5203:-386.829,0,-319.362	1/1:124:1,123:1:36:123:4381:-390.866,-33.7294,0	1/1:153:0,153:0:0:153:5435:-489.282,-46.0576,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:6:0,6:0:0:6:212:-19.4244,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:307:153,154:153:5472:154:5482:-401.092,0,-400.192	1/1:229:0,229:0:0:229:8209:-738.685,-68.9359,0	0/1:51:21,30:21:744:30:1072:-81.4399,0,-51.9318	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:177:90,87:90:3221:87:3101:-226.033,0,-236.828	1/1:20:1,19:1:36:19:671:-57.1175,-2.42233,0	1/1:211:0,211:0:0:211:7465:-671.896,-63.5173,0	1/1:128:0,128:0:0:128:4537:-408.5,-38.5318,0	1/1:112:0,112:0:0:112:3996:-359.828,-33.7154,0	1/1:120:0,120:0:0:120:4276:-384.648,-36.1236,0	1/1:131:0,131:0:0:131:4695:-422.709,-39.4349,0	0/1:250:127,123:127:4521:123:4368:-318.036,0,-331.801	0/1:111:58,53:58:2045:53:1886:-136.603,0,-150.906	0/1:123:56,67:56:1977:67:2400:-179.23,0,-141.176	0/1:181:79,102:79:2817:102:3637:-273.048,0,-199.282	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:171:0,171:0:0:171:6096:-548.739,-51.4761,0	1/1:79:0,79:0:0:79:2815:-253.588,-23.7814,0	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	1/1:99:0,99:0:0:99:3544:-319.169,-29.802,0	1/1:82:0,82:0:0:82:2897:-260.964,-24.6845,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	1/1:74:0,74:0:0:74:2640:-237.847,-22.2762,0	1/1:124:0,124:0:0:124:4406:-396.713,-37.3277,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:145:0,145:0:0:145:5154:-464.001,-43.6494,0	0/1:238:120,118:120:4296:118:4240:-310.133,0,-315.172	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:63:0,63:0:0:63:2250:-202.762,-18.9649,0	1/1:253:1,252:1:36:252:8968:-803.397,-72.5623,0	1/1:118:1,117:1:36:117:4163:-371.25,-31.9233,0	1/1:17:0,17:0:0:17:589:-53.3333,-5.11751,0	1/1:85:0,85:0:0:85:3037:-273.559,-25.5876,0	1/1:139:0,139:0:0:139:4867:-438.186,-41.8432,0	1/1:17:0,17:0:0:17:601:-54.4184,-5.11751,0	0/1:91:37,54:37:1300:54:1931:-146.672,0,-89.9047	0/1:86:49,37:49:1760:37:1332:-94.2938,0,-132.795	1/1:213:0,213:0:0:213:7542:-678.8,-64.1194,0	1/1:92:0,92:0:0:92:3281:-295.509,-27.6948,0	0/1:124:78,46:78:2769:46:1656:-112.001,0,-212.123	1/1:124:1,123:1:36:123:4397:-392.303,-33.7294,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:98:44,54:44:1561:54:1908:-142.494,0,-111.279	0/1:68:40,28:40:1417:28:1008:-70.5663,0,-107.355	0/1:272:133,139:133:4776:139:4935:-362.405,0,-348.115	0/1:129:77,52:77:2763:52:1836:-126.685,0,-210.078	0/1:66:31,35:31:1103:35:1237:-91.7647,0,-79.7118	1/1:106:0,106:0:0:106:3773:-339.769,-31.9092,0	0/1:187:97,90:97:3472:90:3186:-230.673,0,-256.399	0/1:62:29,33:29:1027:33:1165:-86.4911,0,-74.0783	1/1:87:0,87:0:0:87:3098:-279.048,-26.1896,0	1/1:79:0,79:0:0:79:2815:-253.59,-23.7814,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:70:41,29:41:1464:29:1027:-71.6701,0,-110.984	0/1:102:69,33:69:2449:33:1166:-74.5411,0,-189.959	1/1:90:0,90:0:0:90:3209:-289.033,-27.0927,0	1/1:148:0,148:0:0:148:5243:-472.011,-44.5524,0
chr01	6281962	.	T	C	64599.5	PASS	AB=0.483636;ABP=8.12708;AC=153;AF=0.831522;AN=184;AO=2818;CIGAR=1X;DP=4003;DPB=4003;DPRA=14.652;EPP=6122.22;EPPR=2569.69;GTI=29;LEN=1;MEANALT=1.03297;MQM=59.95;MQMR=10.6193;NS=92;NUMALT=1;ODDS=20.0087;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100326;QR=40828;RO=1182;RPL=1;RPP=6113.54;RPPR=2569.69;RPR=2817;RUN=1;SAF=1;SAP=6113.54;SAR=2817;SRF=0;SRP=2569.69;SRR=1182;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:54:29,25:29:1020:25:892:-64.3441,0,-12.3408	1/1:27:1,26:1:36:26:928:-82.7395,-7.02907,0	1/1:95:2,93:2:72:93:3327:-295.174,-24.2304,0	1/1:8:2,6:2:68:6:212:-17.339,-0.322445,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:78:36,42:36:1233:42:1480:-110.011,0,-9.04714	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:29:0,29:0:0:29:1031:-93.1026,-8.72987,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:22:0,22:0:0:22:788:-71.1749,-6.62266,0	0/1:62:41,21:41:1444:21:748:-48.9814,0,-21.6157	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:46:33,13:33:1120:13:464:-28.2501,0,-15.978	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:16:12,4:12:424:4:144:-8.49714,0,-7.06611	0/1:17:13,4:13:460:4:140:-7.82707,0,-7.84414	0/1:85:43,42:43:1470:42:1499:-109.616,0,-13.2322	0/1:134:77,57:77:2644:57:2036:-143.174,0,-35.664	0/1:59:23,36:23:807:36:1276:-97.3823,0,-3.0989	1/1:47:2,45:2:72:45:1596:-141.937,-12.1555,0	1/1:27:4,23:4:136:23:824:-70.4215,-4.066,0	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	0/1:168:78,89:78:2695:89:3176:-235.433,0,-19.5494	1/1:71:0,70:0:0:70:2478:-222.914,-21.0721,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:73:0,73:0:0:73:2597:-233.196,-21.9752,0	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	1/1:45:0,45:0:0:45:1588:-143.208,-13.5464,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-3.07647	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:135:77,58:77:2603:58:2066:-145.571,0,-28.7759	1/1:43:0,43:0:0:43:1508:-136.01,-12.9443,0	0/1:26:9,17:9:316:17:608:-47.2252,0,-1.1794	.:.:.:.:.:.:.:.	0/1:80:41,38:41:1418:38:1339:-96.6682,0,-16.3953	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:32:0,32:0:0:32:1148:-103.629,-9.63296,0	1/1:11:1,10:1:36:10:337:-29.6557,-2.31231,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:130:74,56:74:2583:56:1982:-139.519,0,-30.0808	0/1:76:37,39:37:1251:39:1374:-101.077,0,-10.5489	0/1:98:35,63:35:1215:63:2243:-172.632,0,-2.13961	1/1:37:0,37:0:0:37:1315:-118.651,-11.1381,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:8:5,3:5:158:3:108:-7.66693,0,-2.17347	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:39:1,38:1:36:38:1343:-120.17,-10.7412,0	.:.:.:.:.:.:.:.	1/1:86:0,86:0:0:86:3080:-277.428,-25.8886,0	1/1:76:0,76:0:0:76:2703:-243.514,-22.8783,0	1/1:18:0,18:0:0:18:632:-57.2068,-5.41854,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:62:2,60:2:68:60:2135:-190.521,-16.7671,0	1/1:60:1,59:1:27:59:2083:-186.748,-17.0695,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:21:4,17:4:144:17:612:-51.3481,-2.2563,0	1/1:19:0,19:0:0:19:680:-61.5258,-5.71957,0	1/1:86:23,63:23:804:63:2236:-177.48,-1.86377,0	0/1:63:32,31:32:1108:31:1112:-81.4265,0,-15.4201	0/1:181:71,110:71:2468:110:3932:-299.587,0,-15.4201	1/1:53:0,53:0:0:53:1883:-169.642,-15.9546,0	0/1:34:17,17:17:596:17:612:-45.1784,0,-6.67865	1/1:35:1,34:1:36:34:1216:-108.648,-9.43731,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:83:40,43:40:1347:43:1522:-112.286,0,-14.3346	0/1:93:45,48:45:1580:48:1708:-126.01,0,-16.0571	0/1:106:49,57:49:1654:57:2040:-151.963,0,-12.2703	0/1:51:29,22:29:1020:22:792:-56.1468,0,-12.8523	0/1:44:29,15:29:1027:15:540:-35.6912,0,-13.2806	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:103:59,44:59:2047:44:1539:-107.689,0,-22.2805	0/1:23:12,11:12:416:11:392:-28.6964,0,-4.86449	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	0/1:83:44,39:44:1504:39:1400:-101.314,0,-18.3147	0/1:64:44,20:44:1521:20:720:-45.8629,0,-22.7997	1/1:56:0,56:0:0:56:1975:-178.022,-16.8577,0	1/1:28:1,27:1:36:27:968:-86.4383,-7.42982,0
chr01	6281985	.	G	A	1.02205e-08	PASS	AB=0.523332;ABP=13.8525;AC=31;AF=0.168478;AN=184;AO=1252;CIGAR=1X;DP=4137;DPB=4137;DPRA=2.54432;EPP=2721.69;EPPR=6259.03;GTI=29;LEN=1;MEANALT=1;MQM=10.639;MQMR=59.9574;NS=92;NUMALT=1;ODDS=20.3034;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44565;QR=102656;RO=2885;RPL=0;RPP=2721.69;RPPR=6259.03;RPR=1252;RUN=1;SAF=0;SAP=2721.69;SAR=1252;SRF=0;SRP=6267.71;SRR=2885;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6573	0/1:58:26,32:26:928:32:1111:-13.9711,0,-66.3785	0/0:29:28,1:28:1008:1:36:0,-7.63113,-89.9376	0/0:99:98,1:98:3500:1:36:0,-28.8029,-314.167	0/0:8:6,2:6:216:2:72:0,-0.320639,-17.7029	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:86:44,42:44:1562:42:1494:-12.1403,0,-114.959	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:30:30,0:30:1052:0:0:0,-9.0309,-94.9877	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2702	0/0:25:24,1:24:851:1:36:0,-4.00474,-73.3884	0/1:61:21,40:21:752:40:1423:-21.0221,0,-49.6434	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/1:47:12,35:12:432:35:1239:-17.5005,0,-25.0728	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:18:4,14:4:144:14:496:-8.44152,0,-7.89508	0/1:22:4,18:4:144:18:640:-11.2833,0,-6.69096	0/1:87:42,45:42:1496:45:1594:-14.3537,0,-108.745	0/1:137:58,79:58:2072:79:2787:-36.75,0,-145.51	0/1:60:35,25:35:1252:25:896:-4.60485,0,-94.9233	0/0:50:48,2:48:1700:2:72:0,-13.0586,-151.29	0/0:27:23,4:23:824:4:144:0,-4.06248,-70.418	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/1:179:93,86:93:3311:86:3084:-23.7154,0,-244.325	0/0:74:74,0:74:2638:0:0:0,-22.2762,-237.666	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.885	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	1/1:3:0,3:0:0:3:108:-3.07647,-0.90309,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:143:59,84:59:2084:84:2989:-32.7373,0,-144.781	0/0:47:47,0:47:1658:0:0:0,-14.1484,-149.506	0/1:31:18,13:18:629:13:464:-4.61576,0,-47.6018	.:.:.:.:.:.:.:.	0/1:82:38,44:38:1364:44:1560:-20.6299,0,-98.3763	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:30:30,0:30:1059:0:0:0,-9.0309,-95.6195	0/0:11:10,1:10:347:1:36:0,-2.31231,-30.5646	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4862	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/1:128:56,72:56:1999:72:2584:-29.0016,0,-141.651	0/1:82:42,40:42:1465:40:1423:-12.5301,0,-107.454	0/1:102:65,37:65:2300:37:1320:-2.65818,0,-176.554	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:60:60,0:60:2131:0:0:0,-18.0618,-192.058	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:10:3,7:3:108:7:252:-3.38342,0,-7.06487	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:40:39,1:39:1391:1:36:0,-11.0422,-124.489	.:.:.:.:.:.:.:.	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:77:77,0:77:2741:0:0:0,-23.1793,-246.931	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	0/0:62:60,2:60:2148:2:72:0,-16.7657,-191.689	0/0:60:59,1:59:2107:1:36:0,-17.0628,-188.9	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/0:22:18,4:18:648:4:144:0,-2.55733,-54.5866	0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3299	0/0:89:63,26:63:2236:26:928:0,-0.974774,-175.685	0/1:65:33,32:33:1184:32:1148:-13.4945,0,-87.3014	0/1:187:116,71:116:4119:71:2523:-13.6259,0,-314.602	0/0:50:49,1:49:1751:1:36:0,-11.5708,-154.393	0/1:37:19,18:19:680:18:648:-6.86155,0,-50.3911	0/0:37:36,1:36:1268:1:36:0,-10.0394,-113.321	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:89:44,45:44:1556:45:1601:-17.4221,0,-113.537	0/1:97:46,51:46:1624:51:1808:-20.8494,0,-117.246	0/1:109:56,53:56:1989:53:1904:-15.0295,0,-146.47	0/1:54:24,30:24:845:30:1064:-13.2324,0,-59.8409	0/1:47:15,32:15:536:32:1135:-15.1644,0,-34.4264	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:104:45,59:45:1599:59:2104:-22.0135,0,-112.786	0/1:22:11,11:11:396:11:392:-4.18168,0,-29.3601	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:85:42,43:42:1491:43:1524:-16.7632,0,-108.896	0/1:64:22,42:22:780:42:1494:-20.9303,0,-51.2562	0/0:57:57,0:57:2022:0:0:0,-17.1587,-182.252	0/0:28:27,1:27:972:1:36:0,-7.42982,-86.7989
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chr01	6367619	.	A	G	175750	PASS	AB=0.492282;ABP=5.45728;AC=153;AF=0.81383;AN=188;AO=8278;CIGAR=1X;DP=10698;DPB=10698;DPRA=0;EPP=17978.5;EPPR=5251.46;GTI=4;LEN=1;MEANALT=1.03191;MQM=59.9623;MQMR=59.988;NS=94;NUMALT=1;ODDS=0.16706;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=295203;QR=86678;RO=2417;RPL=0;RPP=17978.5;RPPR=5251.46;RPR=8278;RUN=1;SAF=0;SAP=17978.5;SAR=8278;SRF=0;SRP=5251.46;SRR=2417;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:77:0,77:0:0:77:2741:-246.931,-23.1793,0	0/1:153:87,66:87:3100:66:2344:-165.16,0,-233.168	1/1:263:0,263:0:0:263:9370:-843.268,-79.1709,0	1/1:341:0,341:0:0:341:12124:-1091.02,-102.651,0	1/1:89:0,89:0:0:89:3156:-284.265,-26.7917,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:122:54,68:54:1921:68:2414:-180.79,0,-136.439	1/1:170:0,170:0:0:170:6075:-546.724,-51.1751,0	1/1:223:0,223:0:0:223:7926:-713.362,-67.1297,0	1/1:140:0,140:0:0:140:4989:-449.155,-42.1442,0	1/1:68:0,68:0:0:68:2431:-219.045,-20.47,0	1/1:71:0,71:0:0:71:2521:-227.141,-21.3731,0	0/1:89:38,51:38:1360:51:1832:-138.369,0,-95.9089	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	0/1:94:42,52:42:1512:52:1868:-140.102,0,-108.078	1/1:54:0,54:0:0:54:1922:-173.257,-16.2556,0	1/1:86:1,85:1:36:85:3039:-270.141,-22.2903,0	0/1:84:46,38:46:1652:38:1346:-96.1522,0,-123.682	0/1:49:25,24:25:900:24:864:-63.3321,0,-66.5705	0/1:164:81,83:81:2912:83:2957:-216.994,0,-212.946	0/1:187:107,80:107:3844:80:2863:-201.614,0,-289.862	0/1:136:94,42:94:3372:42:1491:-93.543,0,-262.755	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:152:5,147:5:180:147:5230:-453.855,-29.2045,0	1/1:84:1,83:1:36:83:2954:-262.493,-21.6882,0	0/1:321:154,166:154:5532:166:5933:-437.505,0,-401.43	1/1:293:0,293:0:0:293:10478:-942.937,-88.2018,0	1/1:44:0,44:0:0:44:1567:-141.321,-13.2453,0	0/1:297:166,131:166:5964:131:4672:-331.235,0,-447.458	1/1:83:2,81:2:72:81:2868:-251.517,-18.1488,0	1/1:92:0,92:0:0:92:3308:-297.937,-27.6948,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:3:1,2:1:32:2:72:-5.86023,0,-2.29622	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:230:124,106:124:4448:106:3762:-269.543,0,-331.253	1/1:136:0,136:0:0:136:4859:-437.463,-40.9401,0	0/1:78:34,44:34:1193:44:1567:-117.841,0,-84.1928	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:183:80,103:80:2868:103:3672:-275.523,0,-203.268	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	1/1:184:0,184:0:0:184:6559:-590.37,-55.3895,0	1/1:106:0,106:0:0:106:3734:-336.256,-31.9092,0	1/1:75:0,75:0:0:75:2675:-240.981,-22.5773,0	1/1:108:0,108:0:0:108:3864:-347.954,-32.5112,0	1/1:204:0,203:0:0:203:7260:-653.09,-61.1091,0	0/1:190:92,98:92:3304:98:3479:-256.123,0,-240.382	0/1:116:36,80:36:1292:80:2838:-220.736,0,-81.6643	0/1:191:95,96:95:3403:96:3413:-249.887,0,-248.987	0/1:191:87,104:87:3132:104:3715:-277.055,0,-224.608	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:163:0,163:0:0:163:5808:-522.834,-49.0679,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:198:0,198:0:0:198:7079:-637.161,-59.6039,0	1/1:72:0,72:0:0:72:2554:-230.108,-21.6742,0	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:104:2,102:2:72:102:3656:-322.405,-24.4704,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:251:1,249:1:36:249:8880:-795.662,-71.9441,0	0/1:180:92,88:92:3296:88:3141:-228.72,0,-242.674	1/1:82:0,82:0:0:82:2896:-260.876,-24.6845,0	1/1:143:1,142:1:36:142:5075:-453.296,-39.449,0	1/1:163:0,163:0:0:163:5820:-523.721,-49.0679,0	1/1:58:0,58:0:0:58:2074:-186.93,-17.4597,0	1/1:23:0,23:0:0:23:798:-72.1373,-6.92369,0	1/1:91:2,89:2:72:89:3180:-279.588,-20.557,0	1/1:94:0,94:0:0:94:3375:-303.964,-28.2968,0	1/1:18:0,18:0:0:18:631:-57.1157,-5.41854,0	0/1:153:80,73:80:2876:73:2616:-189.63,0,-213.018	0/1:68:31,37:31:1107:37:1328:-99.3522,0,-79.4701	0/1:123:60,63:60:2160:63:2260:-166.636,0,-157.45	1/1:205:1,204:1:36:204:7315:-654.799,-58.1129,0	0/1:137:75,62:75:2684:62:2207:-157.654,0,-200.564	1/1:150:0,150:0:0:150:5357:-482.259,-45.1545,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:181:88,93:88:3168:93:3325:-244.981,0,-230.857	0/1:163:96,67:96:3448:67:2400:-167.189,0,-261.464	0/1:301:154,147:154:5518:147:5215:-378.876,0,-406.129	0/1:110:55,55:55:1963:55:1951:-142.75,0,-143.831	0/1:82:42,40:42:1512:40:1431:-104.402,0,-111.69	1/1:116:1,115:1:36:115:4095:-365.137,-31.3212,0	0/1:161:80,81:80:2868:81:2899:-212.679,0,-209.891	0/1:39:20,19:20:720:19:680:-49.789,0,-53.3886	1/1:86:0,86:0:0:86:3092:-278.504,-25.8886,0	1/1:75:0,75:0:0:75:2669:-240.454,-22.5773,0	1/1:30:0,30:0:0:30:1063:-95.9808,-9.0309,0	0/1:73:35,38:35:1245:38:1368:-101.446,0,-90.3775	0/1:70:46,24:46:1652:24:860:-56.6497,0,-127.896	1/1:169:0,169:0:0:169:6002:-540.285,-50.8741,0	1/1:138:0,138:0:0:138:4885:-439.804,-41.5421,0
chr01	6495028	.	G	A	115975	PASS	AB=0.496879;ABP=3.25425;AC=153;AF=0.822581;AN=186;AO=5379;CIGAR=1X;DP=6844;DPB=6844;DPRA=0;EPP=11544.8;EPPR=3147.4;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.7565;MQMR=60;NS=93;NUMALT=1;ODDS=0.370655;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192493;QR=52464;RO=1464;RPL=16;RPP=11544.8;RPPR=3147.4;RPR=5363;RUN=1;SAF=0;SAP=11683.4;SAR=5379;SRF=0;SRP=3182.05;SRR=1464;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:819:-74.0119,-6.92369,0	0/1:114:60,54:60:2136:54:1927:-139.369,0,-158.191	1/1:79:0,79:0:0:79:2844:-256.181,-23.7814,0	1/1:178:0,178:0:0:178:6373:-573.651,-53.5833,0	1/1:55:0,55:0:0:55:1972:-177.733,-16.5567,0	1/1:36:1,35:1:36:35:1260:-110.087,-7.23881,0	0/1:101:65,36:65:2328:36:1296:-86.4536,0,-179.376	1/1:87:0,87:0:0:87:3109:-279.95,-26.1896,0	1/1:90:0,90:0:0:90:3227:-290.606,-27.0927,0	1/1:93:1,92:1:36:92:3294:-293.07,-24.3975,0	1/1:49:1,48:1:36:48:1724:-151.845,-11.1522,0	1/1:53:0,53:0:0:53:1891:-170.443,-15.9546,0	0/1:47:24,23:24:860:23:828:-60.6957,0,-63.5734	1/1:60:0,60:0:0:60:2130:-191.646,-18.0618,0	0/1:52:27,25:27:968:25:900:-65.6671,0,-71.7838	1/1:42:0,42:0:0:42:1503:-135.551,-12.6433,0	1/1:40:0,40:0:0:40:1431:-129.061,-12.0412,0	0/1:41:19,22:19:680:22:783:-58.4415,0,-49.1869	0/1:33:17,16:17:612:16:567:-41.4267,0,-45.4794	0/1:157:80,77:80:2876:77:2738:-199.368,0,-211.814	0/1:112:59,52:59:2112:52:1868:-134.778,0,-156.732	0/1:71:40,31:40:1436:31:1116:-79.3777,0,-108.165	1/1:79:0,79:0:0:79:2817:-253.766,-23.7814,0	1/1:88:6,82:6:216:82:2926:-243.696,-6.70013,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:228:104,124:104:3724:124:4431:-330.316,0,-266.726	1/1:181:0,181:0:0:181:6479:-582.493,-54.4864,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:227:104,123:104:3728:123:4428:-330.355,0,-267.387	1/1:101:0,101:0:0:101:3621:-326.008,-30.404,0	1/1:129:0,129:0:0:129:4621:-416.039,-38.8329,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:13:0,13:0:0:13:464:-42.0882,-3.91339,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:8:0,8:0:0:8:288:-26.2357,-2.40824,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:151:81,70:81:2908:70:2503:-180.057,0,-216.499	1/1:156:0,156:0:0:156:5583:-502.248,-46.9607,0	0/1:52:28,24:28:1008:24:864:-62.4208,0,-75.3828	.:.:.:.:.:.:.:.	0/1:133:76,57:76:2716:57:2035:-143.385,0,-204.647	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:81:0,81:0:0:81:2895:-260.781,-24.3834,0	1/1:59:1,58:1:36:58:2078:-183.687,-14.1625,0	1/1:57:0,57:0:0:57:2039:-183.779,-17.1587,0	1/1:54:0,54:0:0:54:1940:-174.875,-16.2556,0	1/1:80:0,80:0:0:80:2860:-257.619,-24.0824,0	0/1:128:63,65:63:2264:65:2336:-171.965,0,-165.49	0/1:88:62,26:62:2224:26:936:-58.0688,0,-173.934	0/1:120:68,52:68:2432:52:1864:-131.871,0,-183.012	0/1:96:40,56:40:1428:56:2012:-152.454,0,-99.9187	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:93:0,93:0:0:93:3336:-300.394,-27.9958,0	1/1:39:2,37:2:72:37:1332:-113.345,-4.90345,0	1/1:17:0,17:0:0:17:608:-55.0152,-5.11751,0	1/1:105:0,105:0:0:105:3768:-339.3,-31.6082,0	1/1:43:0,43:0:0:43:1532:-138.172,-12.9443,0	1/1:12:0,12:0:0:12:425:-38.584,-3.61236,0	0/1:14:10,4:10:352:4:144:-9.0992,0,-27.8038	1/1:62:0,62:0:0:62:2210:-199.154,-18.6639,0	1/1:94:1,93:1:36:93:3312:-294.695,-24.6985,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:160:0,160:0:0:160:5747:-517.34,-48.1648,0	0/1:140:56,84:56:2004:84:2995:-227.635,0,-138.489	1/1:63:0,63:0:0:63:2252:-202.93,-18.9649,0	1/1:91:0,91:0:0:91:3264:-293.964,-27.3937,0	1/1:108:1,107:1:36:107:3808:-339.315,-28.913,0	1/1:76:0,76:0:0:76:2700:-243.243,-22.8783,0	1/1:12:0,12:0:0:12:421:-38.221,-3.61236,0	1/1:70:0,70:0:0:70:2512:-226.324,-21.0721,0	1/1:52:0,52:0:0:52:1868:-168.395,-15.6536,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:72:21,51:21:748:51:1816:-142.047,0,-45.9711	0/1:27:11,16:11:392:16:576:-44.0472,0,-27.4922	1/1:127:0,127:0:0:127:4518:-406.578,-38.2308,0	1/1:160:0,160:0:0:160:5728:-515.632,-48.1648,0	0/1:16:9,7:9:320:7:252:-18.2042,0,-24.3259	1/1:99:0,99:0:0:99:3535:-318.351,-29.802,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:71:29,42:29:1044:42:1500:-113.908,0,-72.9017	0/1:54:31,23:31:1116:23:828:-58.5803,0,-84.4961	0/1:149:57,92:57:2040:92:3287:-251.18,0,-139.019	0/1:86:48,38:48:1724:38:1346:-95.5431,0,-129.557	0/1:47:23,24:23:824:24:860:-63.487,0,-60.3349	1/1:77:0,77:0:0:77:2768:-249.356,-23.1793,0	0/1:103:50,53:50:1792:53:1870:-137.562,0,-130.556	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	1/1:70:0,70:0:0:70:2512:-226.307,-21.0721,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:67:27,40:27:968:40:1440:-109.729,0,-67.2684	0/1:56:42,14:42:1512:14:504:-28.8404,0,-119.517	1/1:68:0,68:0:0:68:2444:-220.192,-20.47,0	1/1:88:0,88:0:0:88:3135:-282.371,-26.4906,0
chr01	6657299	.	CATCA	TATCG,CATCG	284229	PASS	AB=0.426255,0.569801;ABP=218.553,196.11;AC=147,39;AF=0.790323,0.209677;AN=186;AO=7330,3152;CIGAR=1X3M1X,4M1X;DP=10534;DPB=10534.8;DPRA=0,1.55634;EPP=15902.5,6830.13;EPPR=7.35324;GTI=7;LEN=5,1;MEANALT=2,2.47917;MQM=59.6314,59.9702;MQMR=60;NS=93;NUMALT=2;ODDS=0.34114;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=144,0;PQR=0;PRO=0;QA=257927,111908;QR=71;RO=2;RPL=3830,1187;RPP=35.2713,420.002;RPPR=3.0103;RPR=3500,1965;RUN=1,1;SAF=3830,1185;SAP=35.2713,424.301;SAR=3500,1967;SRF=1;SRP=3.0103;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,79,0:0:0:79,0:2775,0:-249.665,-23.7814,0,-249.665,-23.7814,-249.665	1/2:144:0,65,79:0:0:65,79:2290,2789:-413.881,-227.469,-207.902,-186.765,0,-162.983	1/1:147:0,147,0:0:0:147,0:5183,0:-466.545,-44.2514,0,-466.545,-44.2514,-466.545	1/1:202:0,197,0:0:0:197,0:6929,0:-623.351,-59.3029,0,-623.351,-59.3029,-623.351	1/1:103:0,102,0:0:0:102,0:3607,0:-324.358,-30.7051,0,-324.358,-30.7051,-324.358	1/1:68:0,68,0:0:0:68,0:2386,0:-214.931,-20.47,0,-214.931,-20.47,-214.931	1/2:116:0,65,49:0:0:65,49:2301,1748:-329.945,-142.518,-122.951,-187.447,0,-172.696	1/1:96:0,93,3:0:0:93,3:3266,108:-293.735,-27.9958,0,-284.923,-18.8237,-284.02	1/1:92:0,92,0:0:0:92,0:3223,0:-290.103,-27.6948,0,-290.103,-27.6948,-290.103	1/1:74:0,74,0:0:0:74,0:2603,0:-234.473,-22.2762,0,-234.473,-22.2762,-234.473	1/1:118:0,117,0:0:0:117,0:4106,0:-369.384,-35.2205,0,-369.384,-35.2205,-369.384	1/1:187:1,185,0:1:35:185,0:6508,0:-582.23,-52.8478,0,-582.531,-55.6906,-585.378	1/2:159:0,89,70:0:0:89,70:3131,2459:-455.19,-200.334,-173.542,-255.208,0,-234.136	1/1:147:0,145,0:0:0:145,0:5051,0:-453.487,-43.6494,0,-453.487,-43.6494,-453.487	1/2:141:0,83,56:0:0:83,56:2946,1983:-401.56,-161.532,-136.546,-240.028,0,-223.17	1/1:151:0,149,0:0:0:149,0:5247,0:-471.936,-44.8535,0,-471.936,-44.8535,-471.936	1/1:131:0,130,0:0:0:130,0:4542,0:-408.377,-39.1339,0,-408.377,-39.1339,-408.377	1/2:119:0,59,60:0:0:59,60:2072,2114:-341.088,-172.466,-154.706,-168.973,0,-150.911	1/2:102:0,27,75:0:0:27,75:962,2662:-295.662,-217.248,-209.121,-78.7692,0,-56.1919	1/2:104:0,46,58:0:0:46,58:1632,2057:-300.9,-167.94,-154.093,-133.315,0,-115.855	1/2:87:0,35,52:0:0:35,52:1234,1834:-250.156,-149.681,-139.145,-100.828,0,-85.174	1/2:66:0,24,42:0:0:24,42:846,1491:-190.721,-121.841,-114.616,-69.2336,0,-56.5904	1/1:117:0,115,0:0:0:115,0:4020,0:-361.655,-34.6185,0,-361.655,-34.6185,-361.655	1/1:84:0,78,6:0:0:78,6:2755,212:-247.834,-23.4803,0,-230.569,-5.86172,-228.763	1/1:83:0,83,0:0:0:83,0:2939,0:-264.725,-24.9855,0,-264.725,-24.9855,-264.725	1/2:159:0,50,109:0:0:50,109:1753,3884:-459.588,-316.94,-301.889,-143,0,-110.188	1/1:36:0,36,0:0:0:36,0:1274,0:-114.959,-10.8371,0,-114.959,-10.8371,-114.959	1/1:68:0,67,1:0:0:67,1:2372,36:-213.37,-20.169,0,-210.433,-16.8718,-210.132	2/2:70:0,4,65:0:0:4,65:137,2320:-208.714,-197.594,-196.389,-19.567,-8.45977,0	1/1:69:0,66,1:0:0:66,1:2280,36:-205.139,-19.868,0,-202.201,-16.9093,-201.9	1/1:103:0,102,1:0:0:102,1:3603,36:-324.116,-30.7051,0,-321.179,-27.4078,-320.878	1/1:9:0,9,0:0:0:9,0:309,0:-28.1417,-2.70927,0,-28.1417,-2.70927,-28.1417	1/1:26:0,26,0:0:0:26,0:933,0:-84.2845,-7.82678,0,-84.2845,-7.82678,-84.2845	2/2:164:0,4,160:0:0:4,160:136,5711:-513.142,-502.111,-500.907,-48.1648,-36.793,0	1/1:13:0,13,0:0:0:13,0:458,0:-41.5542,-3.91339,0,-41.5542,-3.91339,-41.5542	1/2:16:0,13,3:0:0:13,3:457,99:-45.5467,-8.33349,-4.4201,-37.5471,0,-36.644	1/2:340:0,171,164:0:0:171,164:6032,5745:-958.566,-467.468,-415.992,-491.12,0,-441.751	1/1:79:0,78,0:0:0:78,0:2748,0:-247.105,-23.4803,0,-247.105,-23.4803,-247.105	1/2:238:0,56,181:0:0:56,181:1963,6419:-682.615,-522.945,-506.088,-159.661,0,-105.175	2/2:175:0,6,169:0:0:6,169:211,6034:-542.813,-525.638,-523.831,-50.8741,-33.347,0	1/2:131:0,53,77:0:0:53,77:1861,2732:-374.142,-222.684,-206.729,-151.551,0,-128.372	1/1:71:0,71,0:0:0:71,0:2526,0:-227.556,-21.3731,0,-227.556,-21.3731,-227.556	1/1:182:0,180,1:0:0:180,1:6299,36:-566.668,-54.1854,0,-563.73,-51.198,-563.429	1/1:163:0,162,0:0:0:162,0:5724,0:-514.79,-48.7669,0,-514.79,-48.7669,-514.79	1/1:144:0,144,0:0:0:144,0:5077,0:-456.965,-43.3483,0,-456.965,-43.3483,-456.965	1/1:84:0,84,0:0:0:84,0:2946,0:-265.365,-25.2865,0,-265.365,-25.2865,-265.365	1/1:79:0,79,0:0:0:79,0:2770,0:-249.461,-23.7814,0,-249.461,-23.7814,-249.461	1/2:158:0,75,81:0:0:75,81:2653,2862:-449.159,-233.073,-210.496,-216.08,0,-191.696	1/2:69:0,25,44:0:0:25,44:867,1547:-196.746,-126.276,-118.75,-70.8187,0,-57.5734	1/2:117:0,47,70:0:0:47,70:1654,2487:-337.647,-203.011,-188.863,-134.989,0,-113.917	1/2:101:0,48,53:0:0:48,53:1694,1888:-292.184,-154.244,-139.794,-138.295,0,-122.34	1/1:28:0,27,1:0:0:27,1:961,36:-86.4465,-8.12781,0,-83.5089,-4.83057,-83.2079	1/1:106:1,104,0:1:36:104,0:3637,0:-323.728,-28.3377,0,-324.029,-31.3071,-326.966	1/1:37:0,37,0:0:0:37,0:1310,0:-118.176,-11.1381,0,-118.176,-11.1381,-118.176	1/1:5:0,5,0:0:0:5,0:179,0:-16.4604,-1.50515,0,-16.4604,-1.50515,-16.4604	1/1:67:0,67,0:0:0:67,0:2372,0:-213.73,-20.169,0,-213.73,-20.169,-213.73	1/1:62:0,62,0:0:0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chr01	6657417	.	A	T	155660	PASS	AB=0.473428;ABP=19.3971;AC=153;AF=0.81383;AN=188;AO=5927;CIGAR=1X;DP=7368;DPB=7368;DPRA=0;EPP=7079.81;EPPR=1607.03;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9889;MQMR=59.9569;NS=94;NUMALT=1;ODDS=2.18695;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211927;QR=51475;RO=1439;RPL=1103;RPP=5075.71;RPPR=918.742;RPR=4824;RUN=1;SAF=5590;SAP=10112.6;SAR=337;SRF=1313;SRP=2129.17;SRR=126;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:31:19,12:19:684:12:419:-28.7107,0,-52.5584	1/1:54:1,53:1:36:53:1881:-165.968,-12.6573,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:19:1,18:1:36:18:644:-54.6923,-2.1213,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:37:24,13:24:856:13:460:-30.5973,0,-66.223	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	1/1:20:0,20:0:0:20:697:-63.0507,-6.0206,0	1/1:202:0,201:0:0:201:7200:-647.734,-60.507,0	1/1:95:1,94:1:36:94:3356:-298.659,-24.9996,0	0/1:104:66,38:66:2368:38:1368:-92.1091,0,-182.071	1/1:72:0,72:0:0:72:2572:-231.73,-21.6742,0	0/1:68:34,34:34:1224:34:1224:-89.997,0,-89.997	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	1/1:47:2,45:2:72:45:1599:-137.333,-7.31169,0	0/1:47:26,21:26:936:21:756:-54.2188,0,-70.4111	0/1:171:84,87:84:3012:87:3132:-230.629,0,-219.835	0/1:19:5,14:5:180:14:500:-39.6166,0,-10.8325	0/1:40:25,15:25:892:15:536:-36.5336,0,-68.5585	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:32:0,31:0:0:31:1112:-100.032,-9.33193,0	0/1:22:3,19:3:104:19:684:-55.2677,0,-3.08015	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	0/1:37:23,14:23:809:14:500:-34.1981,0,-61.9902	1/1:108:0,108:0:0:108:3836:-345.439,-32.5112,0	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	0/1:45:21,24:21:756:24:849:-63.1815,0,-54.8209	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:27:0,27:0:0:27:964:-87.0197,-8.12781,0	1/1:161:1,160:1:36:160:5748:-513.835,-44.8676,0	1/1:171:1,170:1:36:170:6088:-544.423,-47.8779,0	0/1:264:137,127:137:4901:127:4556:-330.733,0,-361.74	1/1:333:0,333:0:0:333:11916:-1072.29,-100.243,0	1/1:233:1,232:1:36:232:8312:-744.489,-66.5417,0	0/1:137:64,73:64:2285:73:2603:-193.277,0,-164.669	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:232:130,102:130:4647:102:3652:-259.045,0,-348.553	0/1:144:73,71:73:2612:71:2540:-185.503,0,-191.98	0/1:26:16,10:16:576:10:352:-24.1914,0,-44.3482	1/1:83:1,82:1:36:82:2936:-260.876,-21.3872,0	1/1:49:1,48:1:36:48:1712:-150.767,-11.1522,0	1/1:49:0,49:0:0:49:1748:-157.604,-14.7505,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:51:22,29:22:788:29:1044:-78.9223,0,-55.8923	0/1:24:9,15:9:316:15:532:-40.9884,0,-21.5541	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/1:31:12,19:12:432:19:680:-52.1972,0,-29.8893	1/1:144:3,141:3:108:141:5025:-442.322,-33.2732,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:17:1,16:1:36:16:576:-48.5767,-1.51924,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:153:0,153:0:0:153:5480:-493.326,-46.0576,0	0/1:127:76,51:76:2712:51:1832:-126.93,0,-206.093	1/1:18:0,18:0:0:18:636:-57.568,-5.41854,0	1/1:51:1,50:1:36:50:1783:-157.154,-11.7543,0	1/1:121:0,121:0:0:121:4340:-390.774,-36.4246,0	1/1:117:0,117:0:0:117:4168:-375.302,-35.2205,0	0/1:41:20,21:20:716:21:748:-55.3031,0,-52.4255	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:54:1,53:1:36:53:1896:-167.32,-12.6573,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:221:4,217:4:144:217:7784:-687.275,-53.214,0	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:63:3,60:3:108:60:2143:-183.062,-8.88972,0	1/1:119:2,117:2:72:117:4141:-366.04,-28.9858,0	0/1:28:9,19:9:320:19:680:-53.1003,0,-20.7135	0/1:45:21,24:21:752:24:852:-63.454,0,-54.4599	1/1:58:1,57:1:36:57:2036:-179.914,-13.8615,0	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9907	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:294:0,294:0:0:294:10524:-947.074,-88.5028,0	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:28:11,17:11:381:17:612:-46.9846,0,-26.1836	0/1:68:18,50:18:640:50:1796:-141.452,0,-37.4593	0/1:53:27,26:27:968:26:905:-65.8082,0,-71.4828	0/1:83:45,38:45:1607:38:1364:-98.0752,0,-119.934	1/1:57:0,57:0:0:57:2048:-184.591,-17.1587,0	0/1:111:55,56:55:1944:56:2004:-147.219,0,-141.629	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	1/1:60:2,58:2:72:58:2068:-179.554,-11.2251,0	1/1:72:2,70:2:72:70:2501:-218.504,-14.8374,0	1/1:280:2,278:2:72:278:9948:-888.422,-77.4517,0	0/1:406:251,155:251:8993:155:5536:-376.148,0,-687.128	0/1:53:36,17:36:1292:17:608:-39.0974,0,-100.629	1/1:114:0,114:0:0:114:4051:-364.777,-34.3174,0	1/1:100:0,100:0:0:100:3555:-320.16,-30.103,0
chr01	6697031	.	CAAT	GAAC,CAAC	98495.9	PASS	AB=0.526918,0.466889;ABP=16.2202,22.9984;AC=151,35;AF=0.811828,0.188172;AN=186;AO=3877,987;CIGAR=1X2M1X,3M1X;DP=4890;DPB=4890.25;DPRA=53.1413,1.39713;EPP=8404.45,2146.25;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.68478,2.33333;MQM=59.9781,59.9899;MQMR=0;NS=93;NUMALT=2;ODDS=0.537684;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=130422,35248;QR=0;RO=0;RPL=2,0;RPP=8404.45,2146.25;RPPR=0;RPR=3875,987;RUN=1,1;SAF=3877,987;SAP=8421.81,2146.25;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42,0:0:0:42,0:1394,0:-125.749,-12.6433,0,-125.749,-12.6433,-125.749	1/2:34:0,18,16:0:0:18,16:594,576:-95.3654,-47.3585,-41.94,-48.3526,0,-43.5362	1/1:108:0,107,0:0:0:107,0:3564,0:-320.749,-32.2102,0,-320.749,-32.2102,-320.749	1/1:111:0,109,1:0:0:109,1:3686,36:-331.651,-32.8123,0,-328.714,-29.8199,-328.413	1/1:27:0,27,0:0:0:27,0:923,0:-83.381,-8.12781,0,-83.381,-8.12781,-83.381	1/1:14:0,14,0:0:0:14,0:476,0:-43.1635,-4.21442,0,-43.1635,-4.21442,-43.1635	1/2:56:0,21,35:0:0:21,35:704,1260:-160.176,-103.169,-96.8478,-57.351,0,-46.8149	1/1:44:0,43,0:0:0:43,0:1442,0:-129.759,-12.9443,0,-129.759,-12.9443,-129.759	1/1:49:0,49,0:0:0:49,0:1620,0:-146.082,-14.7505,0,-146.082,-14.7505,-146.082	1/1:37:0,36,1:0:0:36,1:1234,36:-111.001,-10.8371,0,-108.063,-7.53984,-107.762	1/1:60:0,60,0:0:0:60,0:1996,0:-179.91,-18.0618,0,-179.91,-18.0618,-179.91	1/1:110:0,110,0:0:0:110,0:3751,0:-337.799,-33.1133,0,-337.799,-33.1133,-337.799	1/2:95:0,51,44:0:0:51,44:1708,1560:-265.748,-127.444,-112.092,-138.649,0,-125.403	1/1:50:0,50,0:0:0:50,0:1713,0:-154.453,-15.0515,0,-154.453,-15.0515,-154.453	1/2:59:0,31,28:0:0:31,28:1038,1000:-165.931,-81.8865,-72.5546,-84.3904,0,-75.9616	1/1:60:0,60,0:0:0:60,0:2030,0:-182.971,-18.0618,0,-182.971,-18.0618,-182.971	1/1:55:0,55,0:0:0:55,0:1850,0:-166.777,-16.5567,0,-166.777,-16.5567,-166.777	1/2:34:0,15,19:0:0:15,19:507,663:-95.3661,-54.2727,-49.7573,-41.436,0,-35.7164	1/2:32:0,14,17:0:0:14,17:456,612:-86.8404,-50.0398,-45.8254,-36.8834,0,-31.7659	1/2:100:0,40,59:0:0:40,59:1348,2103:-280.695,-171.467,-159.426,-109.261,0,-91.5004	1/2:48:0,23,25:0:0:23,25:770,896:-135.776,-73.4346,-66.5109,-62.6876,0,-55.1618	1/2:45:0,10,33:0:0:10,33:323,1172:-121.595,-95.5504,-92.5401,-26.0703,0,-16.1363	1/1:26:0,26,0:0:0:26,0:858,0:-77.523,-7.82678,0,-77.523,-7.82678,-77.523	1/1:14:0,14,0:0:0:14,0:476,0:-43.163,-4.21442,0,-43.163,-4.21442,-43.163	1/1:56:0,56,0:0:0:56,0:1887,0:-170.108,-16.8577,0,-170.108,-16.8577,-170.108	1/2:121:0,81,40:0:0:81,40:2712,1440:-337.45,-117.857,-93.4731,-219.945,0,-207.903	1/1:102:0,102,0:0:0:102,0:3443,0:-310.094,-30.7051,0,-310.094,-30.7051,-310.094	1/1:40:0,40,0:0:0:40,0:1368,0:-123.415,-12.0412,0,-123.415,-12.0412,-123.415	1/2:103:0,69,34:0:0:69,34:2336,1206:-287.99,-98.6092,-77.8381,-189.73,0,-179.495	1/1:40:0,40,0:0:0:40,0:1316,0:-118.729,-12.0412,0,-118.729,-12.0412,-118.729	1/1:19:0,19,0:0:0:19,0:652,0:-58.9995,-5.71957,0,-58.9995,-5.71957,-58.9995	1/1:10:0,10,0:0:0:10,0:319,0:-29.0196,-3.0103,0,-29.0196,-3.0103,-29.0196	1/1:7:0,7,0:0:0:7,0:236,0:-21.5696,-2.10721,0,-21.5696,-2.10721,-21.5696	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:5:0,5,0:0:0:5,0:142,0:-13.0623,-1.50515,0,-13.0623,-1.50515,-13.0623	1/1:9:0,9,0:0:0:9,0:311,0:-28.3235,-2.70927,0,-28.3235,-2.70927,-28.3235	1/2:162:0,89,73:0:0:89,73:3045,2628:-461.934,-214.791,-188,-247.495,0,-225.519	1/1:30:0,30,0:0:0:30,0:1017,0:-91.8341,-9.0309,0,-91.8341,-9.0309,-91.8341	1/2:44:0,20,23:0:0:20,23:686,824:-122.957,-67.2668,-61.2462,-55.7459,0,-48.8222	.:.:.:.:.:.:.:.	1/2:84:0,49,35:0:0:49,35:1597,1252:-231.363,-102.449,-87.6986,-129.258,0,-118.722	1/1:36:0,36,0:0:0:36,0:1231,0:-111.09,-10.8371,0,-111.09,-10.8371,-111.09	1/1:128:0,127,0:0:0:127,0:4238,0:-381.35,-38.2308,0,-381.35,-38.2308,-381.35	1/1:49:0,47,0:0:0:47,0:1597,0:-143.656,-14.1484,0,-143.656,-14.1484,-143.656	1/1:51:0,51,0:0:0:51,0:1720,0:-155.08,-15.3525,0,-155.08,-15.3525,-155.08	1/1:53:0,52,0:0:0:52,0:1733,0:-155.926,-15.6536,0,-155.926,-15.6536,-155.926	1/1:75:0,75,0:0:0:75,0:2528,0:-227.776,-22.5773,0,-227.776,-22.5773,-227.776	1/2:54:0,33,21:0:0:33,21:1106,752:-151.244,-61.6846,-51.7506,-89.9086,0,-83.587	1/2:40:0,19,21:0:0:19,21:639,740:-112.364,-60.6017,-54.8822,-52.1065,0,-45.7849	1/2:44:0,27,17:0:0:27,17:934,608:-125.825,-49.9345,-41.8067,-76.2438,0,-71.1263	1/2:71:0,42,28:0:0:42,28:1406,1008:-196.193,-82.3537,-69.7105,-113.935,0,-105.506	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:80:0,79,1:0:0:79,1:2618,36:-235.511,-23.7814,0,-232.573,-20.4841,-232.272	1/1:38:0,37,1:0:0:37,1:1236,36:-111.177,-11.1381,0,-108.239,-7.84087,-107.938	1/1:5:0,5,0:0:0:5,0:158,0:-14.5326,-1.50515,0,-14.5326,-1.50515,-14.5326	1/1:53:0,53,0:0:0:53,0:1758,0:-158.127,-15.9546,0,-158.127,-15.9546,-158.127	1/1:15:0,14,0:0:0:14,0:475,0:-42.8173,-4.21442,0,-42.8173,-4.21442,-42.8173	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/2:8:0,4,4:0:0:4,4:138,144:-23.3131,-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chr01	6697120	.	T	C	19261	PASS	AB=0.47915;ABP=12.2466;AC=33;AF=0.177419;AN=186;AO=1183;CIGAR=1X;DP=5801;DPB=5801;DPRA=1.3189;EPP=2571.86;EPPR=10030.9;GTI=1;LEN=1;MEANALT=1;MQM=59.41;MQMR=59.8107;NS=93;NUMALT=1;ODDS=0.585318;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42290;QR=165530;RO=4618;RPL=1183;RPP=2571.86;RPPR=10030.9;RPR=0;RUN=1;SAF=0;SAP=2571.86;SAR=1183;SRF=0;SRP=10030.9;SRR=4618;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:101:44,57:44:1557:57:2033:-152.593,0,-110.014	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.513	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.556	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.478	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:53:36,17:36:1273:17:612:-39.4241,0,-98.9163	0/0:128:128,0:128:4585:0:0:0,-38.5318,-412.794	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:69:69,0:69:2464:0:0:0,-20.7711,-221.963	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.588	0/0:76:75,1:75:2692:1:36:0,-19.28,-238.907	0/1:55:26,29:26:936:29:1032:-76.6119,0,-66.8103	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.468	0/1:65:32,33:32:1152:33:1184:-87.2776,0,-84.4232	0/0:54:52,2:52:1868:2:72:0,-9.4189,-161.529	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.213	0/1:81:44,37:44:1584:37:1324:-94.6904,0,-118.468	0/1:38:21,17:21:756:17:593:-42.255,0,-56.9265	0/1:79:43,36:43:1544:36:1296:-93.1626,0,-115.472	0/1:73:47,26:47:1662:26:932:-62.2237,0,-127.869	0/1:50:18,32:18:648:32:1152:-88.9115,0,-43.597	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.4896	0/0:35:32,3:32:1129:3:108:0,-0.46088,-91.8366	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.568	0/1:118:61,57:61:2192:57:2025:-146.882,0,-162.024	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.518	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5564	0/1:141:69,72:69:2476:72:2580:-189.63,0,-180.642	0/0:105:105,0:105:3776:0:0:0,-31.6081,-340.026	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.302	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	.:.:.:.:.:.:.:.	0/1:161:74,87:74:2648:87:3128:-232.986,0,-189.99	0/0:88:88,0:88:3126:0:0:0,-26.4906,-281.522	0/1:74:42,32:42:1512:32:1148:-81.3344,0,-114.098	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:81:52,29:52:1868:29:1044:-69.8488,0,-144.01	0/0:64:64,0:64:2295:0:0:0,-19.2659,-206.581	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:89:89,0:89:3185:0:0:0,-26.7917,-286.872	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.092	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.147	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.02	0/1:88:45,43:45:1620:43:1540:-112.396,0,-119.596	0/1:57:23,34:23:816:34:1212:-92.2214,0,-56.6005	0/1:74:34,40:34:1220:40:1440:-107.622,0,-87.7948	0/1:77:42,35:42:1500:35:1256:-90.1613,0,-112.059	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83021	0/0:89:89,0:89:3177:0:0:0,-26.7917,-286.142	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.457	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.467	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6045	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.307	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.355	0/1:116:60,56:60:2156:56:1989:-144.357,0,-159.387	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:56:54,2:54:1940:2:68:0,-10.4065,-168.425	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.871	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.967	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.2358	0/0:112:112,0:112:4032:0:0:0,-33.7154,-362.942	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:35:20,15:20:716:15:536:-38.0388,0,-54.2317	0/1:32:18,14:18:644:14:504:-36.0651,0,-48.6576	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.434	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/1:86:53,33:53:1900:33:1184:-80.9666,0,-145.389	0/0:70:68,2:68:2425:2:72:0,-14.2354,-211.668	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:69:36,33:36:1288:33:1184:-86.0717,0,-95.434	0/1:72:40,32:40:1421:32:1140:-81.103,0,-106.511	0/1:80:50,30:50:1792:30:1046:-70.3573,0,-137.48	0/1:98:56,42:56:2016:42:1512:-106.867,0,-151.349	0/1:74:36,38:36:1296:38:1368:-101.126,0,-94.598	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.082	0/1:121:72,49:72:2588:49:1737:-120.157,0,-196.673	0/1:43:22,21:22:792:21:747:-54.5846,0,-58.6614	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.83	0/0:81:81,0:81:2872:0:0:0,-24.3834,-258.716	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.16	0/1:90:43,47:43:1544:47:1688:-125.081,0,-112.16	0/1:57:13,44:13:468:44:1556:-123.164,0,-25.3009	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.769	0/0:93:92,1:92:3308:1:36:0,-24.3975,-294.27
chr01	6816563	.	T	G	20360.3	PASS	AB=0.520138;ABP=6.07135;AC=154;AF=0.819149;AN=188;AO=1694;CIGAR=1X;DP=2112;DPB=2112;DPRA=0;EPP=3681.48;EPPR=910.686;GTI=1;LEN=1;MEANALT=1;MQM=25.8625;MQMR=45.6914;NS=94;NUMALT=1;ODDS=1.88038;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60681;QR=14979;RO=418;RPL=0;RPP=3681.48;RPPR=910.686;RPR=1694;RUN=1;SAF=1694;SAP=3681.48;SAR=0;SRF=418;SRP=910.686;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:468:-32.1522,-3.91339,0	0/1:13:6,7:6:216:7:252:-13.15,0,-15.4522	1/1:36:0,36:0:0:36:1287:-88.6987,-10.8371,0	1/1:28:0,28:0:0:28:1004:-58.6079,-8.42884,0	1/1:18:0,18:0:0:18:644:-44.9135,-5.41854,0	1/1:5:0,5:0:0:5:180:-12.977,-1.50515,0	0/1:20:11,9:11:396:9:320:-12.6387,0,-29.6475	1/1:25:0,25:0:0:25:896:-62.2835,-7.52575,0	1/1:20:0,20:0:0:20:720:-49.2689,-6.0206,0	1/1:5:0,5:0:0:5:180:-10.4828,-1.50515,0	1/1:17:0,17:0:0:17:608:-34.9858,-5.11751,0	1/1:24:0,24:0:0:24:849:-59.3941,-7.22472,0	0/1:20:17,3:17:612:3:108:-1.87843,0,-48.1664	1/1:11:0,11:0:0:11:392:-27.6294,-3.31133,0	0/1:15:9,6:9:320:6:216:-8.01831,0,-24.3859	1/1:7:0,7:0:0:7:252:-18.0549,-2.10721,0	1/1:10:0,10:0:0:10:360:-25.4331,-3.0103,0	1/1:7:0,7:0:0:7:252:-17.0634,-2.10721,0	0/1:4:1,3:1:36:3:108:-6.69491,0,-2.31689	0/1:36:17,19:17:612:19:680:-29.8047,0,-43.6278	0/1:25:11,14:11:396:14:485:-27.0102,0,-27.1659	0/1:19:9,10:9:324:10:360:-14.4889,0,-23.6154	1/1:44:0,44:0:0:44:1569:-92.1083,-13.2453,0	0/1:17:2,15:2:72:15:540:-30.877,0,-1.62467	1/1:17:0,17:0:0:17:608:-43.3565,-5.11751,0	0/1:66:34,32:34:1220:32:1137:-43.7948,0,-88.6514	1/1:66:0,66:0:0:66:2372:-165.981,-19.868,0	1/1:6:0,6:0:0:6:216:-15.0189,-1.80618,0	0/1:82:36,46:36:1292:46:1641:-67.9698,0,-90.8341	1/1:44:0,44:0:0:44:1584:-109.722,-13.2453,0	1/1:31:0,31:0:0:31:1116:-65.2775,-9.33193,0	1/1:4:0,4:0:0:4:144:-10.438,-1.20412,0	1/1:16:0,16:0:0:16:576:-39.4315,-4.81648,0	0/1:5:3,2:3:108:2:72:-3.8549,0,-7.77561	1/1:8:0,8:0:0:8:288:-20.5939,-2.40824,0	1/1:8:0,8:0:0:8:284:-20.5051,-2.40824,0	0/1:44:20,24:20:720:24:860:-34.7909,0,-49.5497	1/1:46:0,46:0:0:46:1656:-112.35,-13.8474,0	0/1:13:7,6:7:252:6:216:-11.6026,0,-18.4612	0/1:2:1,1:1:36:1:36:-2.21902,0,-2.91895	0/1:42:20,22:20:701:22:792:-42.0249,0,-49.2848	1/1:7:0,7:0:0:7:252:-16.2386,-2.10721,0	1/1:35:0,35:0:0:35:1256:-87.1001,-10.5361,0	1/1:6:0,6:0:0:6:216:-13.2032,-1.80618,0	1/1:8:0,8:0:0:8:288:-16.4603,-2.40824,0	1/1:33:0,33:0:0:33:1184:-67.2818,-9.93399,0	1/1:66:0,66:0:0:66:2376:-165.177,-19.868,0	0/1:30:11,19:11:392:19:680:-31.6197,0,-26.2748	0/1:25:12,13:12:432:13:468:-19.3649,0,-31.3525	0/1:17:8,9:8:288:9:324:-13.5692,0,-20.5575	0/1:20:9,11:9:324:11:396:-16.158,0,-23.3253	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	1/1:44:0,44:0:0:44:1584:-111.654,-13.2453,0	1/1:19:0,19:0:0:19:669:-37.4197,-5.71957,0	1/1:9:0,9:0:0:9:324:-23.1329,-2.70927,0	1/1:37:0,37:0:0:37:1328:-90.3667,-11.1381,0	1/1:11:0,11:0:0:11:396:-24.4384,-3.31133,0	1/1:1:0,1:0:0:1:36:-2.18315,-0.30103,0	0/1:5:2,3:2:57:3:108:-4.78634,0,-3.8737	1/1:19:0,19:0:0:19:676:-47.8555,-5.71957,0	1/1:32:0,32:0:0:32:1139:-66.7787,-9.63296,0	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	1/1:38:0,38:0:0:38:1364:-77.105,-11.4391,0	0/1:47:23,24:23:828:24:860:-35.5921,0,-59.8855	1/1:21:0,21:0:0:21:752:-53.5125,-6.32163,0	1/1:18:0,18:0:0:18:648:-37.7222,-5.41854,0	1/1:42:1,41:1:36:41:1457:-82.0412,-9.58872,0	1/1:47:0,47:0:0:47:1688:-97.0859,-14.1484,0	1/1:10:0,10:0:0:10:356:-24.6576,-3.0103,0	1/1:9:0,9:0:0:9:324:-22.6388,-2.70927,0	1/1:18:0,18:0:0:18:640:-36.3791,-5.41854,0	1/1:8:0,8:0:0:8:288:-16.6357,-2.40824,0	0/1:49:27,22:27:968:22:777:-39.8329,0,-70.8255	0/1:11:2,9:2:72:9:324:-18.9197,0,-3.37859	1/1:31:0,31:0:0:31:1116:-76.6271,-9.33193,0	1/1:33:0,33:0:0:33:1188:-70.1417,-9.93399,0	0/1:12:5,7:5:180:7:252:-13.4511,0,-12.5843	1/1:13:0,13:0:0:13:468:-32.7966,-3.91339,0	1/1:5:0,5:0:0:5:180:-12.0664,-1.50515,0	0/1:22:10,12:10:360:12:432:-21.6646,0,-25.3404	0/1:9:4,5:4:144:5:180:-10.2677,0,-10.3185	0/1:66:28,38:28:1008:38:1349:-60.7031,0,-70.0132	0/1:40:22,18:22:792:18:644:-25.5072,0,-58.9384	0/1:11:6,5:6:216:5:165:-6.81268,0,-16.3061	1/1:3:0,3:0:0:3:93:-6.1052,-0.90309,0	0/1:25:12,13:12:432:13:468:-19.857,0,-31.3359	0/1:15:7,8:7:252:8:288:-15.5837,0,-18.019	1/1:20:0,20:0:0:20:720:-47.3061,-6.0206,0	1/1:17:0,17:0:0:17:612:-42.4623,-5.11751,0	1/1:12:0,12:0:0:12:432:-30.2573,-3.61236,0	0/1:32:19,13:19:669:13:468:-23.1636,0,-49.9891	0/1:10:6,4:6:216:4:144:-5.92305,0,-16.6072	1/1:32:0,32:0:0:32:1148:-66.8931,-9.63296,0	1/1:21:0,21:0:0:21:756:-43.789,-6.32163,0
chr01	7052343	.	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chr01	7215625	.	C	T	53873.6	PASS	AB=0.518198;ABP=15.9717;AC=35;AF=0.18617;AN=188;AO=2356;CIGAR=1X;DP=10328;DPB=10328;DPRA=1.375;EPP=5119;EPPR=17233.7;GTI=4;LEN=1;MEANALT=1.02326;MQM=59.8705;MQMR=59.9739;NS=94;NUMALT=1;ODDS=0.558929;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84264;QR=283122;RO=7967;RPL=1238;RPP=16.2825;RPPR=180.514;RPR=1118;RUN=1;SAF=1238;SAP=16.2825;SAR=1118;SRF=4395;SRP=187.622;SRR=3572;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1504:0:0:0,-12.9443,-135.65	0/1:121:57,64:57:2036:64:2300:-170.836,0,-147.088	0/0:98:98,0:98:3482:0:0:0,-29.5009,-313.59	0/0:174:174,0:174:6199:0:0:0,-52.3792,-557.994	0/0:63:63,0:63:2218:0:0:0,-18.9649,-199.884	0/0:54:54,0:54:1899:0:0:0,-16.2556,-171.184	0/1:127:50,77:50:1792:77:2768:-211.128,0,-123.332	0/0:132:132,0:132:4702:0:0:0,-39.736,-423.338	0/0:120:120,0:120:4237:0:0:0,-36.1236,-381.511	0/0:114:114,0:114:4039:0:0:0,-34.3174,-363.696	0/0:98:98,0:98:3475:0:0:0,-29.5009,-312.96	0/0:156:156,0:156:5536:0:0:0,-46.9607,-498.368	0/1:117:71,46:71:2536:46:1652:-113.676,0,-193.271	0/0:140:138,2:138:4892:2:72:0,-35.3075,-433.595	0/1:100:64,36:64:2261:36:1292:-86.4808,0,-173.649	0/0:132:132,0:132:4677:0:0:0,-39.736,-421.092	0/0:127:127,0:127:4516:0:0:0,-38.2308,-406.608	0/1:68:42,26:42:1493:26:936:-64.0885,0,-114.192	0/1:103:52,51:52:1851:51:1828:-133.793,0,-135.863	0/1:187:77,110:77:2742:110:3947:-299.037,0,-190.729	0/1:132:68,64:68:2388:64:2296:-167.137,0,-175.441	0/1:159:33,126:33:1184:126:4510:-358.143,0,-59.0045	0/0:103:101,2:101:3581:2:72:0,-24.1694,-315.392	0/0:126:117,9:117:4138:9:324:0,-8.42392,-343.098	0/0:69:68,0:68:2406:0:0:0,-20.47,-216.433	0/1:201:89,112:89:3175:112:3999:-299.592,0,-225.46	0/0:292:292,0:292:10359:0:0:0,-87.9008,-932.231	0/0:51:51,0:51:1802:0:0:0,-15.3525,-162.46	0/1:233:110,123:110:3932:123:4400:-326.032,0,-283.933	0/0:138:137,1:137:4866:1:36:0,-37.9439,-434.495	0/0:61:61,0:61:2149:0:0:0,-18.3628,-193.676	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:5:4,0:4:144:0:0:0,-1.20412,-13.0094	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:300:162,138:162:5761:138:4940:-354.441,0,-428.297	0/0:89:89,0:89:3175:0:0:0,-26.7917,-285.974	0/1:132:68,64:68:2397:64:2288:-166.445,0,-176.25	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:168:76,92:76:2678:92:3299:-246.552,0,-190.69	0/0:92:92,0:92:3279:0:0:0,-27.6948,-295.33	0/0:138:138,0:138:4928:0:0:0,-41.5421,-443.669	0/0:153:153,0:153:5407:0:0:0,-46.0576,-486.763	0/0:136:136,0:136:4834:0:0:0,-40.9401,-435.214	0/0:95:95,0:95:3386:0:0:0,-28.5978,-304.955	0/0:103:103,0:103:3633:0:0:0,-31.0061,-327.178	0/1:124:60,64:60:2135:64:2274:-167.505,0,-155.09	0/1:131:72,59:72:2560:59:2104:-150.189,0,-191.213	0/1:138:64,74:64:2283:74:2660:-198.093,0,-164.189	0/1:157:83,74:83:2963:74:2656:-192.023,0,-219.641	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:138:138,0:138:4928:0:0:0,-41.5421,-443.669	0/0:70:70,0:70:2482:0:0:0,-21.0721,-223.632	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:134:134,0:134:4713:0:0:0,-40.338,-424.334	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:14:6,8:6:203:8:284:-21.6889,0,-14.3868	0/0:97:97,0:97:3442:0:0:0,-29.1999,-309.994	0/0:218:217,1:217:7738:1:36:0,-62.0263,-692.854	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:117:117,0:117:4177:0:0:0,-35.2205,-376.105	0/1:122:47,75:47:1672:75:2684:-204.99,0,-114.013	0/0:103:103,0:103:3654:0:0:0,-31.0061,-329.061	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.383	0/0:126:122,4:122:4364:4:140:0,-25.0228,-380.028	0/0:164:164,0:164:5840:0:0:0,-49.3689,-525.714	0/0:69:69,0:69:2447:0:0:0,-20.7711,-220.481	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:125:125,0:125:4443:0:0:0,-37.6287,-400.041	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:99:41,58:41:1464:58:2084:-158.027,0,-102.254	0/1:93:45,48:45:1597:48:1715:-126.636,0,-116.022	0/1:188:82,104:82:2931:104:3701:-276.957,0,-207.688	0/0:130:129,0:129:4593:0:0:0,-38.8329,-412.618	0/1:126:68,58:68:2436:58:2060:-147.738,0,-181.566	0/0:90:89,1:89:3196:1:36:0,-23.4944,-284.264	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:111:56,55:56:1995:55:1961:-143.275,0,-146.409	0/1:85:35,50:35:1251:50:1768:-133.813,0,-87.3067	0/1:160:77,83:77:2752:83:2976:-219.901,0,-199.755	0/1:150:81,69:81:2851:69:2453:-175.867,0,-211.673	0/1:94:55,39:55:1968:39:1389:-97.0101,0,-149.098	0/0:157:157,0:157:5572:0:0:0,-47.2617,-501.593	0/1:206:115,91:115:4075:91:3259:-231.487,0,-304.925	0/1:61:38,23:38:1343:23:824:-56.1205,0,-102.807	0/0:149:149,0:149:5276:0:0:0,-44.8535,-474.98	0/0:148:148,0:148:5231:0:0:0,-44.5524,-470.93	0/0:96:96,0:96:3413:0:0:0,-28.8989,-307.384	0/1:148:67,81:67:2371:81:2887:-215.513,0,-169.096	0/1:135:51,84:51:1816:84:2994:-229.048,0,-123.082	0/0:98:97,1:97:3460:1:36:0,-25.9027,-308.011	0/0:197:197,0:197:7017:0:0:0,-59.3029,-631.507
chr01	7332313	.	T	C	49021.7	PASS	AB=0.516382;ABP=15.8162;AC=36;AF=0.191489;AN=188;AO=2874;CIGAR=1X;DP=12679;DPB=12679;DPRA=1.34647;EPP=6165.89;EPPR=20681.9;GTI=4;LEN=1;MEANALT=1.06667;MQM=59.7571;MQMR=59.9714;NS=94;NUMALT=1;ODDS=0.588142;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102728;QR=351352;RO=9801;RPL=2865;RPP=6165.89;RPPR=20673.4;RPR=9;RUN=1;SAF=0;SAP=6243.82;SAR=2874;SRF=1;SRP=21276.9;SRR=9800;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:136:67,69:67:2404:69:2480:-182.513,0,-175.676	0/0:101:101,0:101:3621:0:0:0,-30.404,-326.093	0/0:285:285,0:285:10240:0:0:0,-85.7935,-921.362	0/0:63:62,1:62:2228:1:21:0,-16.8649,-198.684	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.493	0/1:154:78,76:78:2804:76:2712:-197.962,0,-206.241	0/0:232:232,0:232:8337:0:0:0,-69.839,-750.33	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.286	0/0:154:154,0:154:5513:0:0:0,-46.3586,-496.29	0/0:144:144,0:144:5165:0:0:0,-43.3483,-464.987	0/0:124:124,0:124:4464:0:0:0,-37.3277,-401.927	0/1:108:63,45:63:2268:45:1612:-112.858,0,-171.871	0/0:179:178,1:178:6389:1:36:0,-50.2861,-571.494	0/1:72:34,38:34:1209:38:1364:-101.385,0,-87.44	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.514	0/0:150:150,0:150:5396:0:0:0,-45.1545,-485.763	0/1:101:45,56:45:1616:56:2016:-151.309,0,-115.326	0/1:52:35,17:35:1256:17:612:-39.7599,0,-97.6917	0/1:176:77,99:77:2753:99:3520:-263.131,0,-195.028	0/1:163:66,97:66:2376:97:3480:-264.343,0,-165.029	0/1:139:52,87:52:1868:87:3124:-239.536,0,-126.556	0/0:139:137,2:137:4913:2:72:0,-35.015,-435.445	0/0:215:196,19:196:7014:19:684:0,-2.83112,-569.429	0/0:96:96,0:96:3456:0:0:0,-28.8989,-311.251	0/1:545:270,274:270:9659:274:9740:-712.411,0,-705.131	0/0:233:233,0:233:8312:0:0:0,-70.14,-748.084	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:293:135,158:135:4811:158:5642:-419.692,0,-344.932	0/0:249:249,0:249:8925:0:0:0,-74.9565,-803.228	0/0:251:250,1:250:8913:1:36:0,-71.9603,-798.323	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:15:14,1:14:500:1:36:0,-0.917175,-41.7379	0/1:326:147,179:147:5288:179:6421:-479.826,0,-377.916	0/0:383:383,0:383:13685:0:0:0,-115.294,-1231.39	0/1:117:58,59:58:2084:59:2112:-155.092,0,-152.61	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:174:78,95:78:2800:95:3370:-251.011,0,-199.836	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:128:127,1:127:4541:1:36:0,-34.9336,-405.257	0/0:138:138,0:138:4941:0:0:0,-41.5421,-444.838	0/0:102:102,0:102:3653:0:0:0,-30.7051,-328.972	0/0:123:123,0:123:4379:0:0:0,-37.0267,-394.279	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/1:211:101,110:101:3628:110:3952:-292.348,0,-262.835	0/1:71:27,44:27:972:44:1554:-118.776,0,-66.4248	0/1:221:118,103:118:4236:103:3689:-265.672,0,-314.891	0/1:248:121,127:121:4356:127:4506:-329.825,0,-317.399	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:152:152,0:152:5453:0:0:0,-45.7566,-490.895	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.49	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.027	0/0:67:67,0:67:2382:0:0:0,-20.169,-214.634	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/1:44:24,20:24:864:20:720:-51.8825,0,-64.8372	0/0:132:132,0:132:4691:0:0:0,-39.736,-422.349	0/0:235:234,1:234:8424:1:36:0,-67.1442,-754.548	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:279:279,0:279:10013:0:0:0,-83.9874,-901.101	0/1:209:116,93:116:4157:93:3302:-234.454,0,-311.395	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/0:98:98,0:98:3509:0:0:0,-29.5009,-316.018	0/0:251:251,0:251:9001:0:0:0,-75.5585,-810.064	0/0:118:116,2:116:4130:2:68:0,-29.0638,-365.396	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:105:105,0:105:3753:0:0:0,-31.6081,-337.969	0/0:147:147,0:147:5284:0:0:0,-44.2514,-475.691	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:107:55,52:55:1980:52:1872:-136.549,0,-146.264	0/1:34:17,16:17:612:16:576:-41.8812,0,-45.1196	0/1:333:189,144:189:6800:144:5126:-361.141,0,-511.824	0/0:137:137,0:137:4913:0:0:0,-41.2411,-442.318	0/1:131:68,63:68:2429:63:2260:-164.184,0,-179.429	0/0:168:165,3:165:5898:3:108:0,-40.4979,-520.849	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:139:78,61:78:2804:61:2173:-153.992,0,-210.756	0/1:114:48,66:48:1724:66:2353:-177.638,0,-121.128	0/1:146:82,64:82:2948:64:2266:-160.246,0,-221.603	0/1:178:69,109:69:2480:109:3916:-299.027,0,-169.87	0/1:127:53,74:53:1904:74:2656:-201.054,0,-133.407	0/0:170:170,0:170:6112:0:0:0,-51.1751,-550.173	0/1:260:130,130:130:4664:130:4665:-341.634,0,-341.653	0/1:53:25,28:25:900:28:1008:-75.0119,0,-65.3664	0/0:120:119,0:119:4280:0:0:0,-35.8226,-385.016	0/0:144:144,0:144:5180:0:0:0,-43.3483,-466.301	0/0:108:108,0:108:3888:0:0:0,-32.5112,-350.112	0/1:219:106,113:106:3808:113:4064:-299.899,0,-276.991	0/1:84:18,66:18:618:66:2372:-188.421,0,-30.6517	0/0:183:183,0:183:6545:0:0:0,-55.0885,-589.096	0/0:142:142,0:142:5081:0:0:0,-42.7463,-457.432
chr01	7538749	.	C	G	18141.1	PASS	AB=0.499005;ABP=3.06214;AC=137;AF=0.728723;AN=188;AO=8097;CIGAR=1X;DP=11154;DPB=11154;DPRA=59.957;EPP=17585.4;EPPR=6623.83;GTI=46;LEN=1;MEANALT=1.06452;MQM=14.5253;MQMR=17.0827;NS=94;NUMALT=1;ODDS=0.144945;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=285918;QR=108461;RO=3049;RPL=1;RPP=17576.7;RPPR=6615.15;RPR=8096;RUN=1;SAF=1;SAP=17576.7;SAR=8096;SRF=1;SRP=6615.15;SRR=3048;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1819:-72.1887,-15.6536,0	0/1:245:133,112:133:4718:112:3978:-76.4404,0,-133.508	0/1:172:91,81:91:3234:81:2881:-57.6347,0,-86.5369	0/1:371:181,190:181:6412:190:6687:-128.442,0,-165.096	0/1:34:17,17:17:612:17:595:-12.6951,0,-15.863	0/0:11:9,2:9:316:2:72:0,-0.467653,-10.8595	1/1:121:0,121:0:0:121:4266:-152.731,-36.4246,0	0/1:203:108,95:108:3843:95:3364:-66.7233,0,-103.681	0/1:99:57,42:57:1997:42:1481:-26.732,0,-56.481	1/1:136:0,136:0:0:136:4790:-170.233,-40.9401,0	0/1:64:31,33:31:1095:33:1162:-21.8884,0,-28.0423	1/1:89:0,89:0:0:89:3126:-120.208,-26.7917,0	0/1:77:44,33:44:1567:33:1154:-21.0142,0,-43.7869	1/1:91:0,90:0:0:90:3196:-120.622,-27.0927,0	1/1:85:0,85:0:0:85:2982:-106.887,-25.5876,0	1/1:69:0,69:0:0:69:2433:-94.4043,-20.7711,0	0/1:112:42,70:42:1504:70:2475:-60.0654,0,-30.5875	0/1:79:39,40:39:1392:40:1407:-30.1117,0,-35.7604	1/1:44:0,44:0:0:44:1571:-58.4959,-13.2453,0	1/1:268:0,268:0:0:268:9500:-341.247,-80.676,0	0/1:186:91,95:91:3236:95:3361:-71.2251,0,-82.6993	1/1:96:0,96:0:0:96:3388:-120.586,-28.8989,0	0/1:56:26,30:26:913:30:1076:-20.9177,0,-23.3525	1/1:151:8,143:8:280:143:5071:-178.637,-33.2796,0	1/1:67:0,67:0:0:67:2341:-90.2079,-20.169,0	0/1:499:245,254:245:8718:254:8976:-173.833,0,-226.911	0/1:264:152,112:152:5431:112:3976:-72.2713,0,-152.697	0/1:39:17,22:17:600:22:767:-18.0053,0,-14.5061	0/1:354:162,192:162:5773:192:6787:-135.699,0,-141.135	1/1:158:6,152:6:212:152:5361:-194.26,-38.2493,0	1/1:184:2,181:2:72:181:6425:-226.457,-52.0163,0	1/1:4:0,4:0:0:4:144:-5.53769,-1.20412,0	0/1:18:8,10:8:288:10:356:-8.19664,0,-6.86235	1/1:9:0,9:0:0:9:324:-12.2727,-2.70927,0	0/1:4:2,2:2:72:2:72:-1.63956,0,-2.01576	1/1:3:0,3:0:0:3:108:-4.19068,-0.90309,0	1/1:227:0,227:0:0:227:8001:-293.021,-68.3338,0	1/1:179:1,178:1:36:178:6303:-240.643,-52.1897,0	0/1:67:29,38:29:1040:38:1343:-30.6922,0,-24.5763	1/1:10:0,10:0:0:10:360:-13.6197,-3.0103,0	0/1:260:106,154:106:3788:154:5429:-128.42,0,-83.2508	1/1:49:0,49:0:0:49:1733:-65.5737,-14.7505,0	1/1:140:0,140:0:0:140:4887:-187.038,-42.1442,0	1/1:115:0,115:0:0:115:4077:-148.122,-34.6185,0	1/1:91:0,91:0:0:91:3197:-114.4,-27.3937,0	1/1:110:0,110:0:0:110:3867:-138.869,-33.1133,0	0/1:167:77,90:77:2730:90:3180:-72.1985,0,-67.7407	1/1:269:0,269:0:0:269:9539:-342.059,-80.9771,0	0/1:158:78,80:78:2784:80:2836:-53.1488,0,-71.4406	1/1:207:0,207:0:0:207:7298:-261.634,-62.3132,0	1/1:177:0,177:0:0:177:6224:-224.252,-53.2823,0	1/1:4:0,4:0:0:4:140:-6.79946,-1.20412,0	0/1:160:74,85:74:2643:85:2983:-71.5671,0,-64.7813	1/1:44:0,44:0:0:44:1563:-55.4492,-13.2453,0	1/1:17:0,17:0:0:17:604:-24.6637,-5.11751,0	1/1:130:0,130:0:0:130:4590:-173.749,-39.1339,0	1/1:86:0,86:0:0:86:3047:-106.723,-25.8886,0	0/1:18:12,6:12:428:6:216:-4.10222,0,-12.8664	1/1:12:0,12:0:0:12:409:-15.1575,-3.61236,0	0/1:57:28,29:28:995:29:1027:-21.7576,0,-25.0535	0/1:108:55,51:55:1972:51:1787:-31.9361,0,-51.8037	0/0:2:2,0:2:72:0:0:0,-0.60206,-3.21988	0/1:315:161,154:161:5758:154:5403:-99.5184,0,-150.344	0/1:221:124,97:124:4416:97:3454:-57.1785,0,-122.123	0/1:90:48,42:48:1716:42:1479:-29.3131,0,-46.1553	0/1:95:50,45:50:1759:45:1583:-28.09,0,-48.5386	1/1:197:2,195:2:72:195:6922:-240.622,-56.083,0	1/1:76:0,76:0:0:76:2707:-99.1932,-22.8783,0	0/1:27:12,15:12:432:15:532:-11.7667,0,-10.3441	0/1:93:42,50:42:1496:50:1761:-39.4077,0,-36.356	0/1:95:37,58:37:1305:58:2071:-44.4617,0,-27.4144	0/1:35:18,17:18:633:17:608:-11.0699,0,-16.9624	1/1:63:0,63:0:0:63:2222:-84.4028,-18.9649,0	0/1:83:43,40:43:1532:40:1372:-28.6492,0,-41.2626	0/1:174:88,84:88:3143:84:2999:-61.0597,0,-81.8603	1/1:247:0,247:0:0:247:8711:-310.369,-74.3544,0	0/1:49:22,27:22:779:27:922:-22.7957,0,-18.6661	1/1:178:2,176:2:68:176:6222:-236.696,-50.371,0	0/1:12:5,7:5:176:7:252:-5.96634,0,-4.17585	0/1:170:80,90:80:2815:90:3190:-71.4507,0,-71.3544	0/1:142:78,64:78:2779:64:2252:-43.4435,0,-76.3136	1/1:173:0,173:0:0:173:6120:-217.507,-52.0782,0	0/1:110:49,61:49:1751:61:2139:-43.081,0,-41.6578	0/1:72:38,34:38:1341:34:1195:-21.7564,0,-36.6507	1/1:112:0,112:0:0:112:3941:-141.068,-33.7154,0	1/1:163:1,162:1:36:162:5729:-205.345,-47.3732,0	1/1:54:0,54:0:0:54:1894:-72.4526,-16.2556,0	0/1:73:39,34:39:1364:34:1197:-24.9555,0,-37.3368	0/1:87:41,46:41:1472:46:1637:-35.7125,0,-37.8881	0/1:51:27,24:27:972:24:852:-17.022,0,-27.6	0/1:84:53,31:53:1872:31:1095:-17.091,0,-55.2763	0/1:83:56,27:56:2001:27:968:-8.92712,0,-62.8429	1/1:205:0,205:0:0:205:7185:-257.583,-61.7112,0	1/1:147:0,147:0:0:147:5192:-185.007,-44.2514,0
chr01	7538803	.	A	C	18788.1	PASS	AB=0.494812;ABP=4.45232;AC=137;AF=0.728723;AN=188;AO=8239;CIGAR=1X;DP=11393;DPB=11393;DPRA=61.2419;EPP=17893.8;EPPR=6832.29;GTI=43;LEN=1;MEANALT=1.05376;MQM=14.6017;MQMR=17.1172;NS=94;NUMALT=1;ODDS=0.387588;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=294152;QR=112877;RO=3149;RPL=8239;RPP=17893.8;RPPR=6840.98;RPR=0;RUN=1;SAF=0;SAP=17893.8;SAR=8239;SRF=1;SRP=6832.29;SRR=3148;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57:0:0:57:2040:-78.9838,-17.1587,0	0/1:249:136,113:136:4872:113:4060:-77.484,0,-139.427	0/1:171:92,79:92:3300:79:2805:-54.8883,0,-88.1803	0/1:381:186,195:186:6668:195:6966:-131.994,0,-169.976	0/1:34:17,17:17:612:17:612:-12.7235,0,-15.863	0/0:11:9,2:9:320:2:72:0,-0.467653,-10.8652	1/1:121:0,121:0:0:121:4287:-152.448,-36.4246,0	0/1:206:111,95:111:3988:95:3400:-65.9895,0,-107.524	0/1:103:60,43:60:2129:43:1533:-27.4624,0,-59.8347	1/1:137:0,137:0:0:137:4901:-171.979,-41.2411,0	0/1:64:31,33:31:1112:33:1165:-21.8542,0,-28.0885	1/1:91:0,91:0:0:91:3249:-123.261,-27.3937,0	0/1:77:43,34:43:1548:34:1216:-22.4005,0,-42.3956	1/1:95:0,95:0:0:95:3416:-127.752,-28.5979,0	1/1:91:0,91:0:0:91:3255:-116.777,-27.3937,0	1/1:75:0,75:0:0:75:2662:-103.941,-22.5773,0	0/1:113:47,66:47:1684:66:2338:-54.7151,0,-37.7355	0/1:79:38,41:38:1368:41:1472:-31.6801,0,-34.2567	1/1:46:0,46:0:0:46:1640:-61.3781,-13.8474,0	1/1:271:2,269:2:72:269:9648:-339.678,-78.5471,0	0/1:188:92,96:92:3308:96:3432:-71.682,0,-85.5468	1/1:100:0,100:0:0:100:3569:-125.644,-30.103,0	0/1:58:27,31:27:968:31:1093:-23.3789,0,-25.9372	1/1:150:8,142:8:288:142:5054:-179.692,-32.9641,0	1/1:68:0,68:0:0:68:2428:-92.3235,-20.47,0	0/1:510:255,254:255:9132:254:9101:-171.26,0,-239.434	0/1:273:157,116:157:5644:116:4156:-75.0673,0,-158.031	0/1:40:16,24:16:576:24:852:-20.8379,0,-13.061	0/1:363:169,193:169:6052:193:6924:-134.861,0,-151.026	1/1:163:6,157:6:216:157:5606:-201.336,-39.7472,0	1/1:191:2,189:2:72:189:6651:-235.755,-54.2768,0	1/1:5:0,5:0:0:5:176:-6.97009,-1.50515,0	0/1:17:7,10:7:252:10:360:-8.50221,0,-5.63799	1/1:9:0,9:0:0:9:324:-12.2727,-2.70927,0	0/1:4:2,2:2:72:2:72:-1.63956,0,-2.01576	1/1:3:0,3:0:0:3:108:-4.19068,-0.90309,0	1/1:231:0,231:0:0:231:8296:-301.291,-69.5379,0	1/1:180:1,179:1:36:179:6409:-242.34,-52.4907,0	0/1:72:34,38:34:1220:38:1356:-29.7346,0,-31.2239	1/1:10:0,10:0:0:10:360:-13.6197,-3.0103,0	0/1:267:110,157:110:3948:157:5621:-130.527,0,-87.448	1/1:49:0,49:0:0:49:1760:-65.6096,-14.7505,0	1/1:142:0,142:0:0:142:5077:-191.398,-42.7463,0	1/1:116:0,116:0:0:116:4153:-149.297,-34.9195,0	1/1:92:0,91:0:0:91:3276:-114.533,-27.3937,0	1/1:112:0,112:0:0:112:3997:-143.296,-33.7154,0	0/1:168:78,90:78:2804:90:3205:-71.8855,0,-69.1406	1/1:275:0,275:0:0:275:9751:-350.064,-82.7833,0	0/1:165:83,82:83:2968:82:2940:-53.5853,0,-76.9681	1/1:210:0,210:0:0:210:7491:-267.954,-63.2163,0	1/1:182:0,182:0:0:182:6486:-231.407,-54.7875,0	1/1:4:0,4:0:0:4:140:-6.79946,-1.20412,0	0/1:164:78,86:78:2796:86:3060:-72.0757,0,-69.9844	1/1:44:0,44:0:0:44:1584:-55.4759,-13.2453,0	1/1:17:0,17:0:0:17:608:-24.7572,-5.11751,0	1/1:134:0,134:0:0:134:4755:-181.172,-40.338,0	1/1:87:0,87:0:0:87:3120:-108.914,-26.1896,0	0/1:18:12,6:12:428:6:212:-4.09938,0,-12.8664	1/1:12:0,12:0:0:12:417:-15.1646,-3.61236,0	0/1:58:29,29:29:1036:29:1010:-23.2522,0,-26.3916	0/1:110:57,53:57:2048:53:1881:-34.7088,0,-53.7183	0/0:2:2,0:2:72:0:0:0,-0.60206,-3.21988	0/1:326:163,163:163:5841:163:5798:-109.776,0,-150.096	0/1:226:128,98:128:4569:98:3501:-56.9065,0,-126.397	0/1:90:50,40:50:1792:40:1432:-27.0176,0,-49.4052	0/1:100:54,46:54:1936:46:1633:-27.6589,0,-53.2884	1/1:202:3,199:3:108:199:7121:-246.821,-56.1553,0	1/1:77:0,77:0:0:77:2737:-100.454,-23.1793,0	0/1:26:12,14:12:428:14:474:-11.0154,0,-10.638	0/1:93:43,50:43:1548:50:1788:-39.3115,0,-37.6683	0/1:101:40,61:40:1436:61:2184:-46.4409,0,-30.3197	0/1:37:18,19:18:648:19:665:-12.9166,0,-16.4851	1/1:63:0,62:0:0:62:2224:-83.4143,-18.6639,0	0/1:86:45,41:45:1612:41:1446:-28.9619,0,-43.5113	0/1:177:90,87:90:3232:87:3120:-65.6686,0,-83.517	1/1:248:0,248:0:0:248:8897:-312.204,-74.6554,0	0/1:48:20,28:20:712:28:981:-24.4553,0,-16.0323	1/1:182:2,180:2:72:180:6445:-244.586,-51.5676,0	0/1:12:4,8:4:140:8:273:-7.2301,0,-2.6506	0/1:176:85,91:85:3060:91:3272:-71.3173,0,-77.4458	0/1:151:83,68:83:2980:68:2405:-46.0113,0,-81.9731	1/1:178:0,178:0:0:178:6334:-223.706,-53.5833,0	0/1:108:47,61:47:1692:61:2192:-43.8026,0,-39.2484	0/1:75:42,33:42:1493:33:1188:-18.9748,0,-41.9516	1/1:117:0,117:0:0:117:4204:-148.249,-35.2205,0	1/1:162:1,161:1:36:161:5745:-206.026,-47.0722,0	1/1:55:0,55:0:0:55:1980:-73.6973,-16.5567,0	0/1:74:41,33:41:1468:33:1184:-23.8483,0,-40.5006	0/1:85:41,44:41:1453:44:1580:-33.6476,0,-38.3587	0/1:51:26,25:26:936:25:877:-18.7281,0,-26.0751	0/1:90:58,32:58:2072:32:1129:-16.5241,0,-61.4184	0/1:84:56,27:56:2004:27:972:-8.77183,0,-61.1833	1/1:211:0,211:0:0:211:7503:-265.703,-63.5173,0	1/1:147:0,147:0:0:147:5260:-186.158,-44.2514,0
chr01	7800085	.	C	T	72518.1	PASS	AB=0.445931;ABP=50.4433;AC=144;AF=0.765957;AN=188;AO=3362;CIGAR=1X;DP=4414;DPB=4414;DPRA=19.1696;EPP=7156.59;EPPR=2254.9;GTI=0;LEN=1;MEANALT=1.03261;MQM=59.6431;MQMR=59.9704;NS=94;NUMALT=1;ODDS=0.415816;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120402;QR=37505;RO=1049;RPL=17;RPP=7156.59;RPPR=2254.9;RPR=3345;RUN=1;SAF=3362;SAP=7303.5;SAR=0;SRF=1049;SRP=2280.88;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:29,13:29:1040:13:468:-29.8164,0,-81.2665	0/1:42:28,14:28:1008:14:504:-33.0548,0,-78.3931	1/1:121:0,121:0:0:121:4340:-390.688,-36.4246,0	1/1:85:0,85:0:0:85:3008:-270.921,-25.5876,0	0/1:46:23,22:23:824:22:792:-57.8046,0,-60.6825	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	1/1:50:0,50:0:0:50:1796:-161.915,-15.0515,0	1/1:61:0,61:0:0:61:2192:-197.381,-18.3628,0	0/1:91:56,35:56:1996:35:1252:-85.5832,0,-152.512	0/1:46:24,22:24:860:22:771:-55.724,0,-63.8745	1/1:23:0,23:0:0:23:828:-74.5688,-6.92369,0	1/1:56:0,56:0:0:56:2012:-181.345,-16.8577,0	1/1:51:0,51:0:0:51:1830:-164.951,-15.3525,0	0/1:27:15,12:15:528:12:428:-30.731,0,-39.7236	1/1:36:0,36:0:0:36:1292:-116.564,-10.8371,0	1/1:23:0,23:0:0:23:824:-74.4771,-6.92369,0	1/1:20:0,20:0:0:20:720:-65.1206,-6.0206,0	1/1:17:0,17:0:0:17:603:-54.5913,-5.11751,0	1/1:16:0,16:0:0:16:576:-52.0651,-4.81648,0	0/1:72:34,38:34:1220:38:1364:-101.386,0,-88.4326	1/1:82:0,81:0:0:81:2912:-261.941,-24.3834,0	1/1:66:0,66:0:0:66:2372:-213.702,-19.868,0	1/1:60:0,60:0:0:60:2117:-190.795,-18.0618,0	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	1/1:48:0,48:0:0:48:1709:-154.087,-14.4494,0	1/1:125:0,125:0:0:125:4457:-401.053,-37.6288,0	0/1:162:103,59:103:3696:59:2120:-142.292,0,-284.045	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:131:0,131:0:0:131:4697:-422.807,-39.4349,0	1/1:49:0,49:0:0:49:1756:-158.31,-14.7505,0	1/1:35:0,35:0:0:35:1256:-113.343,-10.5361,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:138:0,138:0:0:138:4956:-446.184,-41.5421,0	0/1:76:38,38:38:1356:38:1364:-99.9785,0,-99.4622	0/1:22:10,12:10:356:12:432:-32.5821,0,-25.7586	1/1:2:0,2:0:0:2:72:-6.83188,-0.60206,0	1/1:71:1,70:1:36:70:2520:-223.444,-17.7749,0	0/1:25:13,12:13:468:12:428:-31.3331,0,-34.9339	1/1:73:0,72:0:0:72:2584:-232.435,-21.6742,0	1/1:22:0,22:0:0:22:780:-70.5205,-6.62266,0	0/1:27:13,14:13:464:14:504:-37.5703,0,-33.9697	0/1:65:42,23:42:1478:23:815:-54.1029,0,-113.746	1/1:51:0,51:0:0:51:1817:-163.754,-15.3525,0	1/1:82:1,81:1:36:81:2888:-256.53,-21.0862,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:44:30,14:30:1080:14:504:-32.4366,0,-84.2679	0/1:43:17,26:17:608:26:928:-70.8763,0,-42.1077	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:77:27,50:27:960:50:1789:-138.048,0,-63.537	1/1:18:0,18:0:0:18:648:-58.651,-5.41854,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:79:0,79:0:0:79:2805:-252.636,-23.7814,0	1/1:39:0,39:0:0:39:1396:-125.809,-11.7402,0	0/1:8:6,2:6:208:2:72:-4.42848,0,-16.6508	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:24:0,24:0:0:24:857:-77.45,-7.22472,0	1/1:56:2,54:2:72:54:1935:-167.582,-10.021,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:103:0,103:0:0:103:3704:-333.557,-31.0061,0	0/1:112:78,34:78:2783:34:1224:-76.7233,0,-216.995	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	1/1:35:0,35:0:0:35:1260:-113.701,-10.5361,0	1/1:73:3,70:3:108:70:2516:-216.614,-11.9,0	0/1:68:45,23:45:1620:23:817:-53.376,0,-125.62	1/1:14:0,14:0:0:14:504:-45.6935,-4.21442,0	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	1/1:37:1,36:1:36:36:1296:-113.345,-7.53984,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:126:72,54:72:2554:54:1936:-136.559,0,-192.18	0/1:61:28,33:28:995:33:1184:-88.4891,0,-71.5012	1/1:45:0,45:0:0:45:1597:-143.884,-13.5464,0	0/1:114:67,47:67:2408:47:1679:-117.067,0,-182.659	0/1:42:18,24:18:648:24:860:-65.0777,0,-46.0086	0/1:32:14,18:14:500:18:644:-48.6576,0,-35.7032	1/1:10:0,10:0:0:10:360:-32.7361,-3.0103,0	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	1/1:40:0,40:0:0:40:1440:-129.89,-12.0412,0	1/1:69:2,67:2:72:67:2389:-208.422,-13.9343,0	0/1:47:30,17:30:1076:17:608:-40.9036,0,-83.0044	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:31:14,17:14:500:17:608:-45.7201,0,-36.0042	0/1:83:36,47:36:1283:47:1684:-126.857,0,-90.7871	0/1:14:3,11:3:108:11:396:-31.7597,0,-5.86075	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:36:0,36:0:0:36:1296:-116.928,-10.8371,0	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/1:37:20,17:20:720:17:608:-43.9121,0,-53.9907	0/1:48:29,19:29:1040:19:684:-47.4409,0,-79.4649	1/1:80:0,80:0:0:80:2868:-258.33,-24.0824,0	1/1:60:0,60:0:0:60:2154:-194.112,-18.0618,0
chr01	7800110	.	T	C	69859.7	PASS	AB=0.448649;ABP=45.3834;AC=144;AF=0.765957;AN=188;AO=3336;CIGAR=1X;DP=4376;DPB=4376;DPRA=19.0043;EPP=7247.04;EPPR=2254.83;GTI=1;LEN=1;MEANALT=1.03261;MQM=59.6493;MQMR=59.9865;NS=94;NUMALT=1;ODDS=0.689829;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118186;QR=37012;RO=1037;RPL=3336;RPP=7247.04;RPPR=2254.83;RPR=0;RUN=1;SAF=3336;SAP=7247.04;SAR=0;SRF=1037;SRP=2254.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:29,11:29:1015:11:387:-23.1247,0,-79.6178	0/1:42:28,14:28:1004:14:489:-31.6956,0,-78.0326	1/1:117:0,117:0:0:117:4149:-373.559,-35.2205,0	1/1:84:0,84:0:0:84:2996:-269.831,-25.2865,0	0/1:47:25,22:25:891:22:788:-57.0964,0,-66.3604	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	1/1:52:0,52:0:0:52:1838:-165.687,-15.6536,0	1/1:61:0,61:0:0:61:2127:-191.579,-18.3628,0	0/1:92:57,35:57:2044:35:1245:-84.6498,0,-156.534	0/1:45:24,21:24:851:21:752:-54.2916,0,-63.3631	1/1:23:0,23:0:0:23:798:-71.8641,-6.92369,0	1/1:55:0,55:0:0:55:1922:-173.248,-16.5567,0	1/1:50:0,50:0:0:50:1749:-157.665,-15.0515,0	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	1/1:36:0,36:0:0:36:1271:-114.672,-10.8371,0	1/1:21:0,21:0:0:21:733:-66.2897,-6.32163,0	1/1:20:0,20:0:0:20:712:-64.3985,-6.0206,0	1/1:16:0,16:0:0:16:554:-50.1767,-4.81648,0	1/1:16:0,16:0:0:16:572:-51.764,-4.81648,0	0/1:72:34,38:34:1216:38:1359:-100.935,0,-88.0724	1/1:82:0,82:0:0:82:2903:-261.491,-24.6845,0	1/1:65:0,64:0:0:64:2262:-203.451,-19.2659,0	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	1/1:47:0,47:0:0:47:1679:-151.369,-14.1484,0	1/1:128:1,126:1:36:126:4479:-399.25,-34.9924,0	0/1:161:101,60:101:3624:60:2148:-145.112,0,-277.899	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:130:1,129:1:36:129:4562:-407.073,-35.5356,0	1/1:48:0,48:0:0:48:1681:-151.553,-14.4494,0	1/1:36:0,36:0:0:36:1275:-115.049,-10.8371,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:4:3,1:3:108:1:21:-0.895826,0,-8.87105	1/1:137:0,136:0:0:136:4834:-434.854,-40.9401,0	0/1:76:38,38:38:1364:38:1345:-98.4326,0,-100.182	0/1:20:9,11:9:320:11:396:-29.9457,0,-23.1218	1/1:2:0,2:0:0:2:72:-6.83188,-0.60206,0	1/1:70:1,69:1:36:69:2452:-217.325,-17.4738,0	0/1:24:12,12:12:432:12:419:-30.818,0,-31.9965	1/1:75:0,75:0:0:75:2666:-240.172,-22.5773,0	1/1:22:0,22:0:0:22:763:-68.9874,-6.62266,0	0/1:26:12,14:12:423:14:496:-37.1475,0,-30.5783	0/1:66:41,25:41:1468:25:879:-59.5579,0,-112.548	1/1:52:0,52:0:0:52:1830:-164.921,-15.6536,0	1/1:83:1,82:1:36:82:2923:-259.654,-21.3872,0	1/1:18:1,17:1:36:17:595:-50.2784,-1.82027,0	0/1:44:30,14:30:1065:14:504:-32.4366,0,-82.9144	0/1:41:16,25:16:576:25:900:-68.9788,0,-39.8328	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:76:27,49:27:968:49:1739:-133.899,0,-64.5591	1/1:17:0,17:0:0:17:612:-55.4125,-5.11751,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:80:0,80:0:0:80:2839:-255.696,-24.0824,0	1/1:36:0,36:0:0:36:1296:-116.814,-10.8371,0	0/1:7:5,2:5:171:2:72:-4.72951,0,-13.6182	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:55:2,53:2:72:53:1889:-163.445,-9.71993,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:101:0,101:0:0:101:3569:-321.413,-30.404,0	0/1:113:76,37:76:2708:37:1304:-83.6138,0,-209.946	0/1:28:14,14:14:500:14:504:-37.2693,0,-36.9073	1/1:33:0,33:0:0:33:1158:-104.517,-9.93399,0	1/1:71:3,68:3:108:68:2418:-207.799,-11.298,0	0/1:67:45,22:45:1616:22:781:-50.4383,0,-125.561	1/1:14:0,14:0:0:14:504:-45.6935,-4.21442,0	0/1:25:16,9:16:576:9:320:-21.6166,0,-44.6492	1/1:36:0,36:0:0:36:1269:-114.511,-10.8371,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:129:72,57:72:2567:57:1997:-141.156,0,-192.447	0/1:60:29,31:29:1017:31:1088:-80.1574,0,-73.778	1/1:44:0,44:0:0:44:1543:-139.102,-13.2453,0	0/1:108:64,44:64:2248:44:1559:-108.003,0,-170.068	0/1:42:18,24:18:648:24:828:-62.1891,0,-46.0086	0/1:33:15,18:15:540:18:624:-46.5474,0,-39.0025	1/1:10:0,10:0:0:10:352:-32.0149,-3.0103,0	0/1:28:12,16:12:432:16:568:-43.023,0,-30.7924	1/1:41:0,41:0:0:41:1459:-131.597,-12.3422,0	1/1:68:2,66:2:72:66:2347:-204.647,-13.6333,0	0/1:48:30,18:30:1076:18:631:-42.6662,0,-82.7034	1/1:36:0,36:0:0:36:1273:-114.869,-10.8371,0	0/1:31:13,18:13:453:18:644:-48.9587,0,-31.7677	0/1:83:34,49:34:1211:49:1727:-130.724,0,-84.31	0/1:11:2,9:2:72:9:324:-26.1863,0,-3.52539	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	1/1:36:0,36:0:0:36:1258:-113.502,-10.8371,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:36:19,17:19:684:17:612:-44.5717,0,-51.0532	0/1:46:27,19:27:968:19:671:-46.8684,0,-73.59	1/1:77:0,77:0:0:77:2747:-247.448,-23.1793,0	1/1:61:0,61:0:0:61:2173:-195.821,-18.3628,0
chr01	7806539	.	C	T	17826.3	PASS	AB=0.503165;ABP=3.20271;AC=37;AF=0.196809;AN=188;AO=1122;CIGAR=1X;DP=4718;DPB=4718;DPRA=1.45957;EPP=2430.72;EPPR=7757.43;GTI=1;LEN=1;MEANALT=1.025;MQM=59.9037;MQMR=59.9485;NS=94;NUMALT=1;ODDS=0.05638;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39306;QR=125891;RO=3595;RPL=0;RPP=2439.4;RPPR=7809.45;RPR=1122;RUN=1;SAF=1;SAP=2430.72;SAR=1121;SRF=6;SRP=7757.43;SRR=3589;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:548:0:0:0,-4.81648,-49.6404	0/1:64:29,35:29:996:35:1214:-90.2957,0,-69.9012	0/0:63:63,0:63:2232:0:0:0,-18.9649,-201.142	0/0:179:179,0:179:6259:0:0:0,-53.8844,-563.413	0/0:12:12,0:12:409:0:0:0,-3.61236,-37.1354	0/0:23:23,0:23:798:0:0:0,-6.92369,-72.1366	0/1:78:37,41:37:1324:41:1464:-108.576,0,-95.9818	0/0:117:117,0:117:4078:0:0:0,-35.2205,-367.208	0/0:25:24,1:24:848:1:36:0,-3.92747,-73.0414	0/0:67:67,0:67:2386:0:0:0,-20.169,-214.997	0/0:38:38,0:38:1277:0:0:0,-11.4391,-115.223	0/0:37:37,0:37:1247:0:0:0,-11.1381,-112.523	0/1:45:20,25:20:698:25:847:-62.9926,0,-49.5951	0/0:36:36,0:36:1246:0:0:0,-10.8371,-112.44	0/1:46:23,23:23:793:23:791:-57.6567,0,-57.8375	0/0:23:23,0:23:806:0:0:0,-6.92369,-72.8582	0/0:27:27,0:27:931:0:0:0,-8.12781,-84.1016	0/1:57:22,35:22:755:35:1218:-92.7631,0,-49.7407	0/1:21:14,7:14:478:7:248:-16.3426,0,-37.0225	0/1:111:68,43:68:2404:43:1524:-104.039,0,-183.201	0/1:55:39,16:39:1366:16:564:-34.529,0,-106.68	0/1:69:26,43:26:923:43:1527:-116.951,0,-62.6157	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:27:26,1:26:915:1:36:0,-4.52953,-79.0673	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/1:249:137,112:137:4824:112:3952:-280.688,0,-359.362	0/0:87:87,0:87:3093:0:0:0,-26.1896,-278.597	0/0:27:27,0:27:939:0:0:0,-8.12781,-84.8227	0/1:129:64,65:64:2266:65:2287:-167.257,0,-165.369	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:43:43,0:43:1493:0:0:0,-12.9443,-134.661	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:133:65,68:65:2256:68:2355:-172.168,0,-163.26	0/0:94:94,0:94:3322:0:0:0,-28.2968,-298.71	0/1:34:14,20:14:469:20:698:-52.9064,0,-32.2941	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:38:18,20:18:640:20:703:-52.1544,0,-46.4902	0/0:23:23,0:23:797:0:0:0,-6.92369,-71.9159	0/0:49:49,0:49:1715:0:0:0,-14.7505,-154.632	0/0:50:50,0:50:1731:0:0:0,-15.0515,-156.071	0/0:39:39,0:39:1353:0:0:0,-11.7402,-122.066	0/0:41:41,0:41:1428:0:0:0,-12.3422,-128.79	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:90:48,41:48:1688:41:1456:-104.224,0,-125.091	0/1:70:32,38:32:1135:38:1335:-99.3762,0,-81.386	0/1:81:46,35:46:1648:35:1223:-85.9894,0,-124.225	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:79:79,0:79:2768:0:0:0,-23.7814,-249.36	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9799	0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6803	0/0:65:65,0:65:2297:0:0:0,-19.5669,-206.99	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:31:31,0:31:1104:0:0:0,-9.33193,-98.8121	0/0:76:76,0:76:2589:0:0:0,-22.8783,-233.259	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:104:104,0:104:3655:0:0:0,-31.3071,-329.154	0/1:96:41,55:41:1455:55:1929:-144.208,0,-102.346	0/0:46:46,0:46:1608:0:0:0,-13.8474,-145.006	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/0:81:79,2:79:2779:2:72:0,-17.5467,-243.514	0/0:49:47,2:47:1671:2:72:0,-7.91375,-143.84	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:65:65,0:65:2270:0:0:0,-19.5669,-204.56	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:15:9,6:9:324:6:203:-14.0857,0,-24.9904	0/1:20:7,13:7:252:13:452:-34.9905,0,-17.0084	0/1:43:22,21:22:764:21:744:-54.34,0,-56.1325	0/0:67:67,0:67:2339:0:0:0,-20.169,-210.768	0/1:59:17,42:17:599:42:1477:-115.453,0,-36.4773	0/0:75:75,0:75:2637:0:0:0,-22.5772,-237.575	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:82:28,54:28:980:54:1923:-148.662,0,-63.8257	0/1:30:16,14:16:553:14:474:-33.9485,0,-41.0631	0/1:110:52,58:52:1819:58:2015:-148.508,0,-130.874	0/1:93:53,40:53:1810:40:1407:-98.9307,0,-135.182	0/1:39:19,20:19:654:20:711:-52.5755,0,-47.4399	0/0:44:44,0:44:1501:0:0:0,-13.2453,-135.377	0/1:98:51,47:51:1777:47:1595:-114.332,0,-130.71	0/1:32:19,13:19:667:13:460:-32.1024,0,-50.7217	0/0:55:54,1:54:1863:1:36:0,-12.9584,-164.348	0/0:40:40,0:40:1359:0:0:0,-12.0412,-122.603	0/0:19:19,0:19:648:0:0:0,-5.71957,-58.6371	0/1:51:29,22:29:997:22:744:-51.9193,0,-74.6848	0/1:40:15,25:15:532:25:866:-66.2127,0,-36.1719	0/0:58:58,0:58:2046:0:0:0,-17.4597,-184.411	0/0:58:58,0:58:2019:0:0:0,-17.4597,-181.98
chr01	8604122	.	T	A	120487	PASS	AB=0.506704;ABP=7.05728;AC=35;AF=0.18617;AN=188;AO=5291;CIGAR=1X;DP=21560;DPB=21560;DPRA=1.65373;EPP=11492.3;EPPR=35300.3;GTI=6;LEN=1;MEANALT=1.12245;MQM=59.9883;MQMR=59.9951;NS=94;NUMALT=1;ODDS=1.60526;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188785;QR=578302;RO=16259;RPL=2468;RPP=54.7321;RPPR=354.812;RPR=2823;RUN=1;SAF=2468;SAP=54.7321;SAR=2823;SRF=7317;SRP=355.679;SRR=8942;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:73:73,0:73:2584:0:0:0,-21.9752,-232.808	0/1:389:184,205:184:6568:205:7311:-540.939,0,-474.101	0/0:256:255,1:255:9070:1:32:0,-73.8644,-812.951	0/0:456:456,0:456:16296:0:0:0,-137.27,-1466.31	0/0:174:173,1:173:6132:1:36:0,-48.7809,-548.384	0/0:135:135,0:135:4790:0:0:0,-40.639,-431.257	0/1:404:183,221:183:6512:221:7891:-588.599,0,-464.55	0/0:356:355,1:355:12634:1:36:0,-103.568,-1133.3	0/0:241:241,0:241:8619:0:0:0,-72.5482,-775.706	0/0:240:240,0:240:8535:0:0:0,-72.2472,-768.15	0/0:181:181,0:181:6396:0:0:0,-54.4864,-575.734	0/0:194:194,0:194:6853:0:0:0,-58.3998,-616.847	0/1:188:90,97:90:3165:97:3453:-254.331,0,-228.422	0/0:219:219,0:219:7807:0:0:0,-65.9256,-702.661	0/1:166:75,91:75:2663:91:3265:-244.099,0,-189.945	0/0:151:151,0:151:5369:0:0:0,-45.4555,-483.344	0/0:184:184,0:184:6557:0:0:0,-55.3895,-590.214	0/1:151:67,84:67:2341:84:2992:-224.055,0,-165.489	0/1:99:54,45:54:1924:45:1610:-115.388,0,-143.635	0/1:702:349,353:349:12396:353:12638:-925.921,0,-904.158	0/1:396:190,206:190:6747:206:7351:-542.429,0,-488.098	0/1:194:59,135:59:2099:135:4832:-376.635,0,-130.779	0/0:134:132,2:132:4684:2:72:0,-33.5013,-414.886	0/0:280:270,10:270:9657:10:360:0,-51.5441,-836.336	0/0:155:155,0:155:5462:0:0:0,-46.6596,-491.71	0/1:613:291,322:291:10349:322:11459:-846.657,0,-746.804	0/0:410:409,1:409:14557:1:36:0,-119.824,-1306.28	0/0:116:116,0:116:4134:0:0:0,-34.9195,-372.244	0/1:713:357,355:357:12755:355:12650:-923.634,0,-933.076	0/0:226:226,0:226:8008:0:0:0,-68.0328,-720.747	0/0:288:286,2:286:10185:2:72:0,-79.8599,-909.746	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:6:3,3:3:108:3:99:-7.4304,0,-8.26899	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:488:244,243:244:8675:243:8657:-631.607,0,-633.784	0/0:368:368,0:368:13093:0:0:0,-110.779,-1178.19	0/1:199:101,98:101:3585:98:3492:-254.587,0,-262.953	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:328:175,153:175:6205:153:5437:-390.72,0,-459.815	0/0:109:109,0:109:3851:0:0:0,-32.8123,-346.787	0/0:315:315,0:315:11241:0:0:0,-94.8244,-1011.58	0/0:205:205,0:205:7249:0:0:0,-61.7111,-652.471	0/0:165:165,0:165:5879:0:0:0,-49.6699,-529.223	0/0:281:281,0:281:10001:0:0:0,-84.5894,-900.03	0/0:273:273,0:273:9697:0:0:0,-82.1812,-872.684	0/1:405:223,182:223:7926:182:6463:-459.829,0,-591.451	0/1:284:142,142:142:5079:142:5066:-370.593,0,-371.761	0/1:289:160,128:160:5675:128:4582:-325.488,0,-423.813	0/1:319:161,158:161:5766:158:5648:-412.411,0,-423.024	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:268:268,0:268:9499:0:0:0,-80.676,-854.877	0/0:81:80,1:80:2812:1:32:0,-21.1841,-250.118	0/0:41:41,0:41:1447:0:0:0,-12.3422,-130.525	0/0:251:251,0:251:8948:0:0:0,-75.5585,-805.304	0/0:90:90,0:90:3160:0:0:0,-27.0927,-284.622	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:51:30,21:30:1080:21:744:-51.9318,0,-82.1607	0/0:144:144,0:144:5121:0:0:0,-43.3483,-461.034	0/0:303:302,1:302:10672:1:36:0,-87.6138,-956.806	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.2311	0/0:378:378,0:378:13508:0:0:0,-113.789,-1215.51	0/1:430:201,229:201:7186:229:8185:-607.22,0,-517.353	0/0:151:151,0:151:5376:0:0:0,-45.4555,-483.972	0/0:171:171,0:171:6123:0:0:0,-51.4761,-551.169	0/0:411:404,7:404:14432:7:252:0,-100.694,-1275.6	0/0:184:180,4:180:6397:4:144:0,-42.0759,-562.505	0/0:97:97,0:97:3459:0:0:0,-29.1999,-311.523	0/0:174:173,1:173:6171:1:36:0,-48.7809,-551.889	0/0:220:219,0:219:7800:0:0:0,-65.9256,-701.67	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/1:172:77,95:77:2752:95:3416:-255.876,0,-196.145	0/1:174:87,87:87:3085:87:3093:-226.219,0,-225.499	0/1:342:203,139:203:7221:139:4959:-343.507,0,-546.993	0/0:329:329,0:329:11763:0:0:0,-99.0389,-1058.53	0/1:200:89,111:89:3169:111:3969:-297.193,0,-225.228	0/0:242:237,5:237:8430:5:180:0,-56.2972,-742.155	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:331:159,172:159:5640:172:6135:-452.609,0,-408.081	0/1:296:150,146:150:5352:146:5228:-381.552,0,-392.71	0/1:669:325,344:325:11587:344:12302:-905.63,0,-841.313	0/1:270:154,116:154:5445:116:4152:-292.584,0,-408.907	0/1:179:77,99:77:2726:99:3544:-265.828,0,-192.243	0/0:202:201,1:201:7162:1:36:0,-57.2098,-641.042	0/1:339:197,142:197:7003:142:5052:-352.778,0,-528.29	0/1:125:80,45:80:2822:45:1599:-106.571,0,-216.589	0/0:172:172,0:172:6057:0:0:0,-51.7772,-545.239	0/0:184:183,0:183:6448:0:0:0,-55.0885,-580.055	0/0:150:150,0:150:5322:0:0:0,-45.1545,-479.111	0/1:230:101,128:101:3603:128:4513:-337.104,0,-255.24	0/1:223:67,156:67:2369:156:5566:-433.933,0,-146.338	0/0:310:310,0:310:11022:0:0:0,-93.3193,-991.879	0/0:264:264,0:264:9413:0:0:0,-79.4719,-847.136
chr01	8850379	.	T	A	174084	PASS	AB=0.567706;ABP=174.143;AC=156;AF=0.829787;AN=188;AO=8147;CIGAR=1X;DP=10019;DPB=10019;DPRA=0;EPP=17694;EPPR=4057.15;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.9838;MQMR=59.992;NS=94;NUMALT=1;ODDS=1.2966;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=290249;QR=66911;RO=1867;RPL=0;RPP=17694;RPPR=4057.15;RPR=8147;RUN=1;SAF=8147;SAP=17694;SAR=0;SRF=1867;SRP=4057.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	0/1:138:49,89:49:1756:89:3173:-244.251,0,-116.782	1/1:112:0,112:0:0:112:4001:-360.278,-33.7154,0	1/1:232:2,230:2:72:230:8172:-728.661,-63.0022,0	1/1:76:0,76:0:0:76:2639:-237.754,-22.8783,0	1/1:62:0,62:0:0:62:2197:-197.994,-18.6639,0	0/1:129:58,71:58:2084:71:2490:-185.433,0,-148.997	1/1:100:0,100:0:0:100:3561:-320.684,-30.103,0	1/1:124:0,124:0:0:124:4420:-397.974,-37.3277,0	1/1:124:0,124:0:0:124:4405:-396.624,-37.3277,0	1/1:63:0,63:0:0:63:2237:-201.592,-18.9649,0	1/1:102:0,102:0:0:102:3672:-330.681,-30.7051,0	0/1:85:35,50:35:1260:50:1789:-135.705,0,-88.1179	1/1:101:0,101:0:0:101:3612:-325.286,-30.404,0	0/1:64:32,32:32:1140:32:1152:-84.7242,0,-83.6433	1/1:88:0,87:0:0:87:3124:-281.026,-26.1896,0	1/1:87:0,87:0:0:87:3105:-279.676,-26.1896,0	0/1:69:33,36:33:1184:36:1273:-94.0999,0,-86.0972	0/1:37:9,28:9:324:28:1004:-79.5378,0,-18.3677	0/1:217:79,138:79:2832:138:4918:-377.446,0,-189.795	0/1:194:81,113:81:2908:113:4044:-305.748,0,-203.555	0/1:107:50,57:50:1792:57:2036:-151.302,0,-129.352	1/1:112:0,112:0:0:112:4003:-360.33,-33.7154,0	1/1:90:4,86:4:140:86:3041:-260.976,-14.1481,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:371:170,200:170:6096:200:7148:-531.637,0,-436.999	1/1:185:0,185:0:0:185:6582:-592.462,-55.6906,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:270:145,125:145:5180:125:4464:-320.651,0,-385.063	1/1:205:0,205:0:0:205:7333:-660.01,-61.7112,0	1/1:189:1,188:1:36:188:6673:-597.053,-53.2964,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:249:120,129:120:4316:129:4636:-342.444,0,-313.658	1/1:188:0,188:0:0:188:6716:-604.517,-56.5936,0	0/1:74:35,39:35:1260:39:1396:-103.663,0,-91.4293	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:180:71,109:71:2537:109:3889:-296.018,0,-174.394	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:201:0,201:0:0:201:7154:-643.918,-60.507,0	1/1:112:0,112:0:0:112:3994:-359.65,-33.7154,0	1/1:118:0,118:0:0:118:4228:-380.697,-35.5215,0	1/1:103:0,103:0:0:103:3649:-328.616,-31.0061,0	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	0/1:100:38,61:38:1360:61:2184:-166.664,0,-92.5389	0/1:154:44,110:44:1584:110:3932:-307.712,0,-96.4929	0/1:172:61,111:61:2184:111:3937:-302.747,0,-145.049	0/1:110:49,61:49:1756:61:2155:-161.102,0,-125.211	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:149:0,149:0:0:149:5294:-476.596,-44.8535,0	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:133:0,133:0:0:133:4752:-427.839,-40.037,0	1/1:91:0,91:0:0:91:3232:-291.104,-27.3937,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:85:0,85:0:0:85:3013:-271.401,-25.5876,0	1/1:140:0,139:0:0:139:4996:-449.425,-41.8432,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:255:0,255:0:0:255:9070:-816.28,-76.7627,0	0/1:206:96,110:96:3448:110:3890:-288.283,0,-248.52	1/1:113:0,113:0:0:113:4007:-360.817,-34.0164,0	1/1:96:0,96:0:0:96:3394:-305.675,-28.8989,0	1/1:190:3,187:3:108:187:6665:-589.854,-47.1205,0	1/1:88:0,88:0:0:88:3140:-282.827,-26.4906,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:99:0,99:0:0:99:3536:-318.45,-29.802,0	1/1:108:0,107:0:0:107:3821:-343.766,-32.2102,0	1/1:30:0,30:0:0:30:1060:-95.7113,-9.0309,0	0/1:67:30,37:30:1072:37:1324:-99.2931,0,-76.6234	0/1:52:14,38:14:504:38:1359:-106.957,0,-30.0445	0/1:177:67,110:67:2400:110:3887:-296.741,0,-162.975	1/1:153:0,153:0:0:153:5434:-488.564,-46.0576,0	0/1:125:54,71:54:1936:71:2532:-190.5,0,-136.888	1/1:204:0,204:0:0:204:7210:-648.957,-61.4101,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:104:36,68:36:1288:68:2409:-185.759,0,-84.9165	0/1:85:44,41:44:1572:41:1464:-106.469,0,-116.184	0/1:123:51,72:51:1832:72:2564:-193.984,0,-128.134	0/1:121:52,69:52:1845:69:2444:-183.701,0,-129.885	0/1:78:40,38:40:1432:38:1345:-97.8678,0,-105.697	1/1:136:0,136:0:0:136:4864:-437.914,-40.9401,0	0/1:220:107,113:107:3852:113:4022:-295.94,0,-280.647	0/1:74:30,44:30:1080:44:1572:-119.495,0,-75.237	1/1:99:0,99:0:0:99:3560:-320.607,-29.802,0	1/1:77:0,77:0:0:77:2745:-247.291,-23.1793,0	1/1:46:0,46:0:0:46:1641:-147.978,-13.8474,0	0/1:64:28,36:28:1004:36:1296:-97.678,0,-71.4099	0/1:82:48,34:48:1716:34:1212:-84.7019,0,-130.041	1/1:136:0,136:0:0:136:4848:-436.476,-40.9401,0	1/1:134:1,133:1:21:133:4759:-426.366,-38.2381,0
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chr01	8959417	.	G	C	2.35699e-06	PASS	AB=0.404125;ABP=184.969;AC=34;AF=0.180851;AN=188;AO=931;CIGAR=1X;DP=5811;DPB=5811;DPRA=1.30422;EPP=2024.65;EPPR=10569.4;GTI=33;LEN=1;MEANALT=1;MQM=15.4586;MQMR=43.6046;NS=94;NUMALT=1;ODDS=15.244;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33322;QR=173911;RO=4878;RPL=0;RPP=2024.65;RPPR=10595.5;RPR=931;RUN=1;SAF=0;SAP=2024.65;SAR=931;SRF=3;SRP=10569.4;SRR=4875;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1913:0:0:0,-16.2556,-167.352	0/1:52:34,18:34:1212:18:648:-10.3578,0,-89.207	0/0:102:102,0:102:3660:0:0:0,-30.7051,-318.043	0/0:176:174,0:174:6203:0:0:0,-52.3792,-545.977	0/0:20:20,0:20:712:0:0:0,-6.0206,-61.4915	0/0:42:42,0:42:1493:0:0:0,-12.6433,-130.468	0/1:44:33,11:33:1161:11:396:-1.81151,0,-90.0095	0/0:146:146,0:146:5252:0:0:0,-43.9504,-456.479	0/0:86:86,0:86:3042:0:0:0,-25.8886,-266.285	0/0:69:69,0:69:2480:0:0:0,-20.7711,-220.09	0/0:34:34,0:34:1220:0:0:0,-10.235,-108.08	0/0:62:62,0:62:2211:0:0:0,-18.6639,-193.122	0/1:37:18,19:18:640:19:684:-16.3094,0,-44.0517	0/0:32:32,0:32:1133:0:0:0,-9.63296,-99.833	0/1:44:23,21:23:815:21:752:-15.456,0,-59.0594	0/0:33:33,0:33:1184:0:0:0,-9.93399,-104.266	0/0:29:29,0:29:1027:0:0:0,-8.72987,-88.397	0/1:15:9,6:9:324:6:212:-4.25561,0,-24.2067	0/1:19:10,9:10:360:9:320:-7.36015,0,-26.1111	0/1:25:12,13:12:428:13:468:-10.4049,0,-30.2547	0/1:97:56,41:56:1995:41:1464:-29.8272,0,-145.889	0/1:53:19,34:19:668:34:1220:-29.9887,0,-43.3184	0/0:128:123,5:123:4411:5:180:0,-31.556,-381.624	0/0:33:33,0:33:1162:0:0:0,-9.93399,-102.138	0/0:65:65,0:65:2300:0:0:0,-19.5669,-201.988	0/1:213:131,82:131:4685:82:2929:-46.4828,0,-352.886	0/0:198:198,0:198:7095:0:0:0,-59.6039,-623.345	0/0:31:31,0:31:1116:0:0:0,-9.33193,-98.864	0/1:93:57,36:57:2044:36:1296:-20.6461,0,-153.007	0/0:113:113,0:113:4020:0:0:0,-34.0164,-353.335	0/0:111:111,0:111:3975:0:0:0,-33.4143,-349.92	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.17144	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.2524	0/1:4:1,3:1:36:3:108:-3.26408,0,-2.29858	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.3318	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.9154	0/1:125:69,56:69:2464:56:1993:-38.218,0,-179.936	0/0:108:108,0:108:3851:0:0:0,-32.5112,-337.58	0/1:38:23,15:23:815:15:532:-10.2521,0,-59.1564	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.90114	0/1:64:43,21:43:1520:21:752:-11.0483,0,-113.283	0/0:22:22,0:22:792:0:0:0,-6.62266,-69.3301	0/0:57:57,0:57:2052:0:0:0,-17.1587,-181.262	0/0:27:27,0:27:968:0:0:0,-8.12781,-86.1711	0/0:38:38,0:38:1364:0:0:0,-11.4391,-121.581	0/0:48:48,0:48:1715:0:0:0,-14.4494,-153.062	0/0:155:155,0:155:5551:0:0:0,-46.6596,-481.638	0/1:142:91,51:91:3234:51:1817:-26.817,0,-241.887	0/1:59:43,16:43:1535:16:576:-4.39009,0,-119.001	0/1:107:75,32:75:2668:32:1152:-11.4017,0,-204.119	0/1:19:10,9:10:356:9:316:-6.63437,0,-26.3747	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5312	0/0:172:172,0:172:6106:0:0:0,-51.7772,-529.45	0/0:24:24,0:24:855:0:0:0,-7.22472,-75.4415	0/0:7:7,0:7:244:0:0:0,-2.10721,-21.7881	0/0:94:94,0:94:3355:0:0:0,-28.2968,-293.807	0/0:33:33,0:33:1162:0:0:0,-9.93399,-102.387	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.52884	0/1:7:2,5:2:72:5:180:-4.77748,0,-4.68231	0/0:64:63,1:63:2251:1:36:0,-17.6701,-197.344	0/0:84:84,0:84:2992:0:0:0,-25.2865,-265.197	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.18762	0/0:157:156,1:156:5573:1:36:0,-45.765,-495.176	0/1:127:88,39:88:3123:39:1400:-14.8042,0,-234.937	0/0:47:47,0:47:1680:0:0:0,-14.1484,-148.184	0/0:78:78,0:78:2771:0:0:0,-23.4803,-244.962	0/0:69:68,1:68:2428:1:36:0,-19.1753,-212.715	0/0:65:65,0:65:2311:0:0:0,-19.5669,-204.501	0/0:24:24,0:24:864:0:0:0,-7.22472,-76.6601	0/0:34:34,0:34:1181:0:0:0,-10.235,-101.332	0/0:40:40,0:40:1409:0:0:0,-12.0412,-125.316	0/0:20:20,0:20:712:0:0:0,-6.0206,-62.9073	0/1:110:58,52:58:2063:52:1856:-41.7064,0,-146.75	0/1:61:31,30:31:1112:30:1080:-24.883,0,-78.2639	0/1:86:57,29:57:2005:29:1040:-15.9153,0,-150.943	0/0:102:102,0:102:3647:0:0:0,-30.7051,-323.461	0/1:83:62,21:62:2208:21:747:-5.30896,0,-165.59	0/0:95:93,2:93:3282:2:72:0,-25.5659,-282.822	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.24762	0/1:87:50,37:50:1784:37:1316:-27.0869,0,-130.191	0/1:50:34,16:34:1220:16:576:-8.08741,0,-89.9603	0/1:123:74,49:74:2630:49:1760:-30.0158,0,-196.411	0/1:39:18,21:18:644:21:756:-16.7863,0,-45.0277	0/1:30:21,9:21:744:9:324:-3.33212,0,-57.4969	0/0:30:30,0:30:1063:0:0:0,-9.0309,-94.6729	0/1:84:37,47:37:1328:47:1684:-38.4316,0,-92.0425	0/1:21:10,11:10:348:11:396:-9.63624,0,-24.6515	0/0:49:49,0:49:1756:0:0:0,-14.7505,-151.887	0/0:48:48,0:48:1720:0:0:0,-14.4494,-151.046	0/0:26:26,0:26:923:0:0:0,-7.82678,-81.3589	0/1:75:37,38:37:1324:38:1360:-32.4138,0,-93.8234	0/1:46:22,24:22:792:24:852:-18.8846,0,-56.8416	0/0:49:49,0:49:1745:0:0:0,-14.7505,-154.151	0/0:61:61,0:61:2163:0:0:0,-18.3628,-191.739
chr01	8959445	.	C	A	9.31193e-06	PASS	AB=0.407423;ABP=175.492;AC=34;AF=0.180851;AN=188;AO=956;CIGAR=1X;DP=5877;DPB=5877;DPRA=1.4342;EPP=2078.94;EPPR=10567.5;GTI=33;LEN=1;MEANALT=1.02439;MQM=15.5711;MQMR=43.4834;NS=94;NUMALT=1;ODDS=13.6741;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34263;QR=175177;RO=4917;RPL=0;RPP=2078.94;RPPR=10541.6;RPR=956;RUN=1;SAF=0;SAP=2078.94;SAR=956;SRF=3;SRP=10654.1;SRR=4914;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1957:0:0:0,-16.5566,-169.664	0/1:52:34,18:34:1220:18:648:-10.3578,0,-89.7909	0/0:102:102,0:102:3657:0:0:0,-30.7051,-318.355	0/0:174:174,0:174:6215:0:0:0,-52.3792,-545.379	0/0:20:20,0:20:705:0:0:0,-6.0206,-60.8464	0/0:42:42,0:42:1493:0:0:0,-12.6433,-130.468	0/1:43:32,11:32:1144:11:396:-2.11254,0,-89.1604	0/0:149:148,1:148:5245:1:36:0,-41.6073,-453.372	0/0:87:87,0:87:3083:0:0:0,-26.1896,-268.84	0/0:72:72,0:72:2569:0:0:0,-21.6742,-226.67	0/0:33:33,0:33:1188:0:0:0,-9.93399,-105.266	0/0:60:60,0:60:2156:0:0:0,-18.0618,-188.194	0/1:38:18,20:18:648:20:720:-17.8008,0,-44.3738	0/0:33:33,0:33:1158:0:0:0,-9.93399,-101.939	0/1:45:24,21:24:845:21:756:-15.1594,0,-61.1512	0/0:33:33,0:33:1188:0:0:0,-9.93399,-104.593	0/0:29:29,0:29:1044:0:0:0,-8.72987,-89.756	0/1:15:9,6:9:324:6:216:-4.26138,0,-24.2067	0/1:19:10,9:10:360:9:324:-7.36588,0,-26.1111	0/1:25:12,13:12:432:13:468:-10.4049,0,-30.5958	0/1:101:57,44:57:1988:44:1569:-33.0334,0,-144.074	0/1:52:19,33:19:669:33:1188:-28.9473,0,-43.7121	0/0:128:123,5:123:4382:5:180:0,-31.556,-377.995	0/0:34:34,0:34:1224:0:0:0,-10.235,-106.128	0/0:66:66,0:66:2361:0:0:0,-19.868,-207.21	0/1:217:133,84:133:4719:84:3016:-49.383,0,-353.613	0/0:203:203,0:203:7285:0:0:0,-61.1091,-638.731	0/0:32:32,0:32:1152:0:0:0,-9.63296,-102.047	0/1:92:57,35:57:2048:35:1245:-19.5177,0,-152.749	0/0:112:111,1:111:3943:1:36:0,-30.9792,-344.457	0/0:113:113,0:113:4019:0:0:0,-34.0164,-354.341	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.27881	0/0:6:6,0:6:186:0:0:0,-1.80618,-16.6365	0/1:4:1,3:1:36:3:108:-3.26408,0,-2.29858	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.3318	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.9154	0/1:127:70,57:70:2505:57:2052:-39.4103,0,-181.153	0/0:108:107,0:107:3783:0:0:0,-32.2102,-331.532	0/1:39:23,16:23:828:16:561:-11.2968,0,-59.9047	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.90114	0/1:64:43,21:43:1505:21:752:-11.0483,0,-112.555	0/0:23:23,0:23:813:0:0:0,-6.92369,-71.2121	0/0:57:57,0:57:2048:0:0:0,-17.1587,-179.818	0/0:27:27,0:27:957:0:0:0,-8.12781,-85.1911	0/0:40:40,0:40:1421:0:0:0,-12.0412,-126.626	0/0:50:50,0:50:1773:0:0:0,-15.0515,-157.405	0/0:156:156,0:156:5501:0:0:0,-46.9607,-478.683	0/1:146:93,53:93:3299:53:1870:-28.6452,0,-245.57	0/1:60:44,16:44:1569:16:576:-4.08906,0,-121.632	0/1:108:75,33:75:2647:33:1188:-12.8042,0,-201.8	0/1:20:11,9:11:381:9:324:-6.34242,0,-28.3122	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5312	0/0:174:173,0:173:6182:0:0:0,-52.0782,-535.484	0/0:25:25,0:25:885:0:0:0,-7.52575,-77.9278	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.1027	0/0:93:93,0:93:3325:0:0:0,-27.9958,-290.727	0/0:35:35,0:35:1245:0:0:0,-10.536,-106.671	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.52884	0/1:7:2,5:2:72:5:180:-4.77748,0,-4.68231	0/0:64:63,1:63:2234:1:36:0,-17.6701,-194.945	0/0:85:85,0:85:3045:0:0:0,-25.5875,-268.984	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.18762	0/0:156:155,1:155:5561:1:36:0,-45.464,-492.063	0/1:128:88,39:88:3134:39:1404:-14.8517,0,-237.116	0/0:47:47,0:47:1658:0:0:0,-14.1484,-146.273	0/0:79:79,0:79:2776:0:0:0,-23.7814,-244.15	0/0:67:66,1:66:2353:1:36:0,-18.5732,-205.525	0/0:65:64,0:64:2289:0:0:0,-19.2659,-201.265	0/0:24:24,0:24:864:0:0:0,-7.22472,-76.6601	0/0:34:34,0:34:1220:0:0:0,-10.235,-104.199	0/0:40:40,0:40:1425:0:0:0,-12.0412,-126.77	0/0:21:21,0:21:741:0:0:0,-6.32163,-65.242	0/1:113:59,54:59:2075:54:1940:-43.9595,0,-145.394	0/1:65:33,32:33:1165:32:1148:-26.899,0,-81.9491	0/1:86:57,29:57:2048:29:1029:-15.8194,0,-154.222	0/0:103:103,0:103:3696:0:0:0,-31.0061,-327.699	0/1:82:59,23:59:2124:23:813:-8.67363,0,-158.963	0/0:98:96,2:96:3429:2:72:0,-26.4689,-293.828	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.24762	0/1:90:53,37:53:1889:37:1328:-26.2009,0,-137.608	0/1:50:34,16:34:1224:16:576:-8.08741,0,-90.271	0/1:125:75,50:75:2666:50:1796:-31.1168,0,-197.323	0/1:39:18,21:18:648:21:756:-16.7863,0,-45.3678	0/1:30:21,9:21:756:9:324:-3.33212,0,-58.5163	0/0:30:30,0:30:1061:0:0:0,-9.0309,-94.4622	0/1:88:39,49:39:1389:49:1760:-40.1036,0,-96.1958	0/1:22:10,12:10:341:12:432:-11.04,0,-23.6737	0/0:49:49,0:49:1760:0:0:0,-14.7505,-152.197	0/0:47:47,0:47:1677:0:0:0,-14.1484,-147.246	0/0:26:26,0:26:921:0:0:0,-7.82678,-81.1501	0/1:75:37,38:37:1332:38:1364:-32.4195,0,-94.311	0/1:50:22,28:22:792:28:1004:-24.5044,0,-55.6375	0/0:50:50,0:50:1777:0:0:0,-15.0515,-157.34	0/0:62:62,0:62:2217:0:0:0,-18.6639,-196.416
chr01	8960367	.	G	T	34880.8	PASS	AB=0.457896;ABP=74.8727;AC=34;AF=0.180851;AN=188;AO=2145;CIGAR=1X;DP=10676;DPB=10676;DPRA=1.4262;EPP=4660.82;EPPR=18499.6;GTI=1;LEN=1;MEANALT=1.07692;MQM=59.9688;MQMR=59.9953;NS=94;NUMALT=1;ODDS=0.240314;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76684;QR=302821;RO=8526;RPL=0;RPP=4660.82;RPPR=18499.6;RPR=2145;RUN=1;SAF=0;SAP=4660.82;SAR=2145;SRF=0;SRP=18517;SRR=8526;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1268:0:0:0,-10.8371,-114.42	0/1:191:115,76:115:4085:76:2699:-185.655,0,-310.338	0/0:126:126,0:126:4488:0:0:0,-37.9298,-404.089	0/0:247:247,0:247:8820:0:0:0,-74.3544,-793.787	0/0:110:110,0:110:3923:0:0:0,-33.1133,-353.264	0/0:135:135,0:135:4801:0:0:0,-40.639,-432.23	0/1:140:86,54:86:3079:54:1928:-131.653,0,-235.193	0/0:172:172,0:172:6118:0:0:0,-51.7772,-550.721	0/0:98:98,0:98:3460:0:0:0,-29.5009,-311.611	0/0:132:132,0:132:4693:0:0:0,-39.736,-422.532	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:75:75,0:75:2653:0:0:0,-22.5772,-239.016	0/1:60:39,21:39:1380:21:748:-49.5835,0,-106.437	0/0:102:101,0:101:3534:0:0:0,-30.404,-317.91	0/1:66:35,31:35:1256:31:1112:-80.5234,0,-93.4773	0/0:62:62,0:62:2187:0:0:0,-18.6639,-197.093	0/0:83:83,0:83:2945:0:0:0,-24.9855,-265.281	0/1:53:25,28:25:900:28:1000:-74.3608,0,-65.3664	0/1:35:19,16:19:675:16:576:-41.6389,0,-50.5409	0/1:142:83,59:83:2962:59:2116:-147.949,0,-224.066	0/1:199:99,100:99:3535:100:3580:-262.485,0,-258.453	0/1:57:20,37:20:669:37:1323:-102.213,0,-43.3618	0/0:106:106,0:106:3786:0:0:0,-31.9092,-340.938	0/0:155:154,1:154:5492:1:36:0,-43.0614,-490.808	0/0:116:116,0:116:4126:0:0:0,-34.9195,-371.523	0/1:380:198,182:198:7038:182:6502:-470.766,0,-519.091	0/0:157:155,1:155:5485:1:36:0,-43.7222,-490.18	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:283:165,118:165:5834:118:4229:-295.597,0,-439.986	0/0:211:211,0:211:7515:0:0:0,-63.5173,-676.391	0/0:177:177,0:177:6275:0:0:0,-53.2823,-564.83	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:18:17,1:17:597:1:36:0,-1.82026,-50.4578	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:216:124,92:124:4413:92:3300:-232.196,0,-332.32	0/0:237:237,0:237:8417:0:0:0,-71.3441,-757.536	0/1:78:51,27:51:1801:27:968:-63.957,0,-138.889	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:152:90,62:90:3193:62:2203:-152.778,0,-241.835	0/0:60:60,0:60:2101:0:0:0,-18.0618,-189.356	0/0:167:167,0:167:5922:0:0:0,-50.272,-533.089	0/0:107:107,0:107:3793:0:0:0,-32.2102,-341.567	0/0:88:88,0:88:3147:0:0:0,-26.4906,-283.455	0/0:106:106,0:106:3746:0:0:0,-31.9092,-337.338	0/0:162:162,0:162:5773:0:0:0,-48.7669,-519.686	0/1:98:56,42:56:1957:42:1492:-105.073,0,-146.9	0/1:144:92,52:92:3265:52:1853:-123.7,0,-250.722	0/1:192:98,94:98:3476:94:3372:-245.898,0,-255.254	0/1:173:96,77:96:3415:77:2741:-194.854,0,-255.484	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:135:135,0:135:4773:0:0:0,-40.639,-429.727	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/0:181:181,0:181:6445:0:0:0,-54.4864,-580.136	0/0:74:74,0:74:2602:0:0:0,-22.2762,-234.427	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:22:13,9:13:460:9:324:-22.8832,0,-35.1127	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.101	0/0:90:90,0:90:3215:0:0:0,-27.0927,-289.572	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:262:262,0:262:9323:0:0:0,-78.8699,-839.035	0/1:252:110,141:110:3920:141:5044:-378.188,0,-277.076	0/0:107:107,0:107:3796:0:0:0,-32.2102,-341.836	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/0:197:197,0:197:6982:0:0:0,-59.3029,-628.447	0/0:93:93,0:93:3314:0:0:0,-27.9958,-298.478	0/0:41:41,0:41:1456:0:0:0,-12.3422,-131.336	0/0:121:121,0:121:4317:0:0:0,-36.4246,-388.706	0/0:96:96,0:96:3429:0:0:0,-28.8989,-308.822	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/1:139:89,50:89:3156:50:1775:-118.189,0,-242.422	0/1:104:63,41:63:2223:41:1468:-101.109,0,-169.025	0/1:229:143,86:143:5075:86:3080:-208.492,0,-387.955	0/0:201:197,2:197:7010:2:72:0,-53.4281,-624.128	0/1:229:101,128:101:3564:128:4592:-344.508,0,-252.031	0/0:170:167,3:167:5943:3:108:0,-41.0999,-524.901	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:171:88,83:88:3121:83:2980:-216.956,0,-229.64	0/1:110:73,37:73:2616:37:1332:-87.0691,0,-202.574	0/1:231:114,117:114:4038:117:4164:-305.404,0,-294.07	0/1:131:64,67:64:2280:67:2402:-176.998,0,-166.025	0/1:62:31,31:31:1112:31:1104:-81.0068,0,-81.7275	0/0:87:87,0:87:3088:0:0:0,-26.1896,-278.147	0/1:170:83,87:83:2937:87:3106:-228.591,0,-213.389	0/1:43:24,19:24:836:19:675:-48.1327,0,-62.6104	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.395	0/0:81:81,0:81:2853:0:0:0,-24.3834,-257.006	0/0:41:41,0:41:1449:0:0:0,-12.3422,-130.704	0/1:91:34,57:34:1203:57:2032:-155.759,0,-81.1813	0/1:20:5,15:5:180:15:540:-42.9159,0,-10.5315	0/0:127:127,0:127:4524:0:0:0,-38.2308,-407.327	0/0:141:141,0:141:4943:0:0:0,-42.4452,-445.021
chr01	9103613	.	T	C	161672	PASS	AB=0.542915;ABP=34.5082;AC=156;AF=0.829787;AN=188;AO=7320;CIGAR=1X;DP=8239;DPB=8239;DPRA=0;EPP=15880.8;EPPR=1968.23;GTI=3;LEN=1;MEANALT=1.05319;MQM=59.9693;MQMR=60;NS=94;NUMALT=1;ODDS=1.10452;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=260588;QR=32711;RO=913;RPL=2;RPP=15880.8;RPPR=1968.23;RPR=7318;RUN=1;SAF=0;SAP=15898.2;SAR=7320;SRF=0;SRP=1985.56;SRR=913;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	1/1:127:0,127:0:0:127:4532:-408.046,-38.2308,0	1/1:40:0,40:0:0:40:1431:-129.087,-12.0412,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:46:19,27:19:684:27:963:-73.1386,0,-48.0429	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:148:0,148:0:0:148:5257:-473.267,-44.5524,0	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	0/1:34:19,15:19:676:15:523:-37.1634,0,-50.933	1/1:13:0,13:0:0:13:436:-39.5603,-3.91339,0	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	1/1:29:0,29:0:0:29:1019:-92.0181,-8.72987,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:43:8,35:8:276:35:1256:-100.401,0,-12.231	0/1:86:45,41:45:1612:41:1454:-105.265,0,-119.481	0/1:36:18,18:18:648:18:644:-47.4535,0,-47.8148	0/1:59:41,18:41:1472:18:639:-40.0775,0,-115.015	1/1:49:2,47:2:72:47:1669:-143.659,-7.91375,0	1/1:25:1,24:1:36:24:858:-73.943,-3.92748,0	1/1:47:0,47:0:0:47:1666:-150.226,-14.1484,0	0/1:103:50,53:50:1796:53:1898:-140.091,0,-130.916	1/1:74:0,74:0:0:74:2622:-236.228,-22.2762,0	1/1:9:0,9:0:0:9:322:-29.3242,-2.70927,0	0/1:132:61,71:61:2167:71:2529:-188.124,0,-155.56	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:39:0,39:0:0:39:1395:-125.848,-11.7402,0	1/1:294:0,294:0:0:294:10469:-942.129,-88.5028,0	1/1:566:0,565:0:0:565:20146:-1812.38,-170.082,0	1/1:79:3,76:3:108:76:2682:-231.548,-13.7062,0	1/1:669:0,669:0:0:669:23863:-2147.03,-201.389,0	1/1:732:1,731:1:36:731:26059:-2340.97,-216.756,0	0/1:105:57,48:57:2044:48:1708:-122.398,0,-152.624	1/1:44:0,44:0:0:44:1569:-141.501,-13.2453,0	0/1:66:11,55:11:396:55:1932:-154.286,0,-16.1148	1/1:155:2,153:2:72:153:5431:-482.078,-39.8229,0	0/1:44:30,14:30:1076:14:500:-32.0909,0,-83.9075	1/1:94:0,94:0:0:94:3350:-301.718,-28.2968,0	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	1/1:45:0,45:0:0:45:1607:-144.919,-13.5464,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:100:51,49:51:1828:49:1751:-127.77,0,-134.698	0/1:74:35,39:35:1260:39:1396:-103.663,0,-91.4293	0/1:36:21,15:21:756:15:540:-38.0995,0,-57.5301	0/1:70:33,37:33:1180:37:1320:-98.0298,0,-85.4359	1/1:173:0,173:0:0:173:6166:-555.041,-52.0782,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:26:0,26:0:0:26:902:-81.4903,-7.82678,0	1/1:222:1,219:1:36:219:7787:-697.24,-62.9882,0	1/1:44:0,44:0:0:44:1551:-139.878,-13.2453,0	1/1:33:0,33:0:0:33:1167:-105.336,-9.93399,0	1/1:264:1,263:1:36:263:9380:-840.566,-75.8736,0	1/1:146:3,143:3:108:143:5120:-450.864,-33.8752,0	1/1:16:0,16:0:0:16:559:-50.6291,-4.81648,0	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:228:0,228:0:0:228:8118:-730.61,-68.6348,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:41:22,18:22:792:18:648:-46.2509,0,-59.2046	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:46:0,46:0:0:46:1647:-148.518,-13.8474,0	1/1:51:1,50:1:36:50:1783:-157.154,-11.7543,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:168:0,168:0:0:168:5908:-531.832,-50.573,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:24:0,24:0:0:24:860:-77.3497,-7.22472,0	1/1:173:0,172:0:0:172:6137:-552.229,-51.7772,0	0/1:96:43,53:43:1544:53:1884:-140.938,0,-110.354	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	0/1:70:31,39:31:1116:39:1396:-104.867,0,-79.6796	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:48:28,20:28:1000:20:711:-49.8662,0,-75.8659	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:492:0,492:0:0:492:17551:-1579.11,-148.107,0	0/1:37:18,19:18:644:19:676:-50.0299,0,-47.1525	0/1:31:15,16:15:540:16:567:-42.0288,0,-39.6046	0/1:116:55,61:55:1968:61:2177:-161.275,0,-142.476	0/1:36:27,9:27:968:9:324:-18.6688,0,-76.6003	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	1/1:13:0,13:0:0:13:459:-41.6441,-3.91339,0	0/1:78:49,29:49:1760:29:1007:-67.4561,0,-135.204	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:147:0,147:0:0:147:5193:-467.509,-44.2514,0	0/1:236:23,212:23:820:212:7436:-598.083,0,-3.02078	0/1:45:35,10:35:1248:10:347:-18.0173,0,-99.0785	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0
chr01	9248176	.	CACAA	GACAT,CACAT	249105	PASS	AB=0.523387,0.472988;ABP=29.2144,37.9696;AC=153,35;AF=0.81383,0.18617;AN=188;AO=9499,2628;CIGAR=1X3M1X,4M1X;DP=12165;DPB=12165.4;DPRA=65.3925,1.64849;EPP=20629.8,5709.64;EPPR=0;GTI=1;LEN=5,1;MEANALT=1.80645,2.5;MQM=40.4765,54.6758;MQMR=0;NS=94;NUMALT=2;ODDS=1.3501;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=72,0;PQR=0;PRO=0;QA=337812,94062;QR=0;RO=0;RPL=9499,2628;RPP=20629.8,5709.64;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=20629.8,5709.64;SAR=9499,2628;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35,0:0:0:35,0:1231,0:-104.113,-10.5361,0,-104.113,-10.5361,-104.113	1/2:210:0,100,110:0:0:100,110:3541,3941:-587.695,-320.253,-290.15,-267.785,0,-234.671	1/1:122:0,122,0:0:0:122,0:4351,0:-366.44,-36.7257,0,-366.44,-36.7257,-366.44	1/1:636:0,635,0:0:0:635,0:22625,0:-1976.13,-191.154,0,-1976.13,-191.154,-1976.13	1/1:93:0,93,0:0:0:93,0:3324,0:-285.418,-27.9958,0,-285.418,-27.9958,-285.418	1/1:96:0,96,0:0:0:96,0:3405,0:-285.911,-28.8989,0,-285.911,-28.8989,-285.911	1/2:174:0,86,87:0:0:86,87:3068,3113:-494.864,-252.932,-227.043,-241.927,0,-215.737	1/1:199:0,197,1:0:0:197,1:6983,36:-588.352,-59.3029,0,-585.422,-56.3636,-585.121	1/1:81:0,81,0:0:0:81,0:2876,0:-242.597,-24.3834,0,-242.597,-24.3834,-242.597	1/1:160:0,159,0:0:0:159,0:5628,0:-491.546,-47.8638,0,-491.546,-47.8638,-491.546	1/1:28:0,28,0:0:0:28,0:995,0:-85.5524,-8.42884,0,-85.5524,-8.42884,-85.5524	1/1:71:0,71,0:0:0:71,0:2516,0:-212.192,-21.3731,0,-212.192,-21.3731,-212.192	1/2:56:0,33,23:0:0:33,23:1179,828:-157.009,-67.5665,-57.6325,-89.7915,0,-82.8678	1/1:47:0,47,0:0:0:47,0:1671,0:-143.348,-14.1484,0,-143.348,-14.1484,-143.348	1/2:52:0,28,24:0:0:28,24:999,864:-148.87,-70.7768,-62.348,-78.4457,0,-71.221	1/1:42:0,42,0:0:0:42,0:1502,0:-130.2,-12.6433,0,-130.2,-12.6433,-130.2	1/1:78:0,75,0:0:0:75,0:2657,0:-224.729,-22.5773,0,-224.729,-22.5773,-224.729	1/2:75:0,36,38:0:0:36,38:1267,1368:-208.178,-111.3,-100.463,-96.8678,0,-85.4287	1/2:33:0,20,13:0:0:20,13:718,468:-92.2653,-38.4283,-32.4077,-54.1855,0,-50.2721	1/2:323:0,164,159:0:0:164,159:5859,5701:-925.452,-464.36,-414.991,-461.444,0,-413.581	1/2:178:0,98,77:0:0:98,77:3485,2752:-493.282,-223.455,-193.954,-269.818,0,-246.639	1/2:169:0,59,110:0:0:59,110:2105,3941:-487.86,-321.511,-303.75,-166.7,0,-133.586	1/1:151:0,150,0:0:0:150,0:5346,0:-465.125,-45.1545,0,-465.125,-45.1545,-465.125	1/1:228:0,220,8:0:0:220,8:7808,288:-669.521,-66.2266,0,-646.058,-42.4047,-643.65	1/1:56:0,56,0:0:0:56,0:1998,0:-172.18,-16.8577,0,-172.18,-16.8577,-172.18	1/2:471:0,278,192:0:0:278,192:9824,6858:-1338.62,-558.267,-474.581,-780.347,0,-722.549	1/1:161:0,161,0:0:0:161,0:5731,0:-489.326,-48.4658,0,-489.326,-48.4658,-489.326	1/1:45:0,45,0:0:0:45,0:1601,0:-138.707,-13.5464,0,-138.707,-13.5464,-138.707	1/2:347:0,182,163:0:0:182,163:6451,5813:-984.485,-472.455,-417.668,-512.025,0,-462.957	1/1:217:0,214,2:0:0:214,2:7607,72:-653.95,-64.4204,0,-648.085,-58.5455,-647.483	1/1:157:0,157,0:0:0:157,0:5583,0:-486.116,-47.2617,0,-486.116,-47.2617,-486.116	1/1:7:0,7,0:0:0:7,0:251,0:-22.0413,-2.10721,0,-22.0413,-2.10721,-22.0413	1/1:13:0,13,0:0:0:13,0:449,0:-39.3243,-3.91339,0,-39.3243,-3.91339,-39.3243	2/2:2:0,0,2:0:0:0,2:0,72:-6.62799,-6.62799,-6.62799,-0.60206,-0.60206,0	1/1:15:0,15,0:0:0:15,0:531,0:-45.4745,-4.51545,0,-45.4745,-4.51545,-45.4745	1/1:5:0,5,0:0:0:5,0:174,0:-14.4051,-1.50515,0,-14.4051,-1.50515,-14.4051	1/2:227:0,132,94:0:0:132,94:4705,3380:-647.846,-275.086,-235.35,-372.766,0,-344.469	1/1:322:0,322,0:0:0:322,0:11455,0:-984.113,-96.9317,0,-984.113,-96.9317,-984.113	1/2:74:0,37,36:0:0:37,36:1320,1296:-205.811,-105.244,-94.1062,-100.581,0,-89.7437	1/1:1:0,1,0:0:0:1,0:36,0:-3.45449,-0.30103,0,-3.45449,-0.30103,-3.45449	1/2:196:0,80,116:0:0:80,116:2860,4137:-559.14,-336.948,-312.866,-222.539,0,-187.62	1/1:34:0,34,0:0:0:34,0:1206,0:-101.958,-10.235,0,-101.958,-10.235,-101.958	1/1:243:0,243,0:0:0:243,0:8661,0:-743.722,-73.1503,0,-743.722,-73.1503,-743.722	1/1:73:0,72,0:0:0:72,0:2585,0:-225.836,-21.6742,0,-225.836,-21.6742,-225.836	1/1:84:0,84,0:0:0:84,0:3000,0:-262.372,-25.2865,0,-262.372,-25.2865,-262.372	1/1:121:0,120,0:0:0:120,0:4277,0:-376.546,-36.1236,0,-376.546,-36.1236,-376.546	1/1:206:0,206,0:0:0:206,0:7311,0:-615.801,-62.0122,0,-615.801,-62.0122,-615.801	1/2:306:0,163,142:0:0:163,142:5792,5068:-866.703,-411.728,-362.66,-454.966,0,-412.22	1/2:221:0,127,94:0:0:127,94:4484,3369:-625.637,-274.621,-236.39,-351.366,0,-323.069	1/2:175:0,106,69:0:0:106,69:3771,2469:-497.808,-201.225,-169.316,-296.936,0,-276.165	1/2:222:0,116,105:0:0:116,105:4133,3765:-636.734,-306.836,-271.916,-329.946,0,-298.338	1/1:21:0,21,0:0:0:21,0:744,0:-65.5132,-6.32163,0,-65.5132,-6.32163,-65.5132	1/1:159:0,158,0:0:0:158,0:5628,0:-472.914,-47.5627,0,-472.914,-47.5627,-472.914	1/1:40:0,40,0:0:0:40,0:1408,0:-124.956,-12.0412,0,-124.956,-12.0412,-124.956	1/1:23:0,23,0:0:0:23,0:825,0:-70.1058,-6.92369,0,-70.1058,-6.92369,-70.1058	1/1:192:0,191,0:0:0:191,0:6773,0:-580.416,-57.4967,0,-580.416,-57.4967,-580.416	1/1:56:0,56,0:0:0:56,0:1986,0:-1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chr01	9677340	.	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chr01	9682678	.	T	C	77233.6	PASS	AB=0.504708;ABP=4.7483;AC=95;AF=0.510753;AN=186;AO=4561;CIGAR=1X;DP=9032;DPB=9032;DPRA=0;EPP=9907.1;EPPR=9707.32;GTI=2;LEN=1;MEANALT=1.02151;MQM=53.8342;MQMR=34.6471;NS=93;NUMALT=1;ODDS=1.00327;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163481;QR=160159;RO=4469;RPL=0;RPP=9907.1;RPPR=9707.32;RPR=4561;RUN=1;SAF=4561;SAP=9907.1;SAR=0;SRF=4469;SRP=9707.32;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:9,5:9:320:5:180:-12.3142,0,-24.8587	0/1:92:54,38:54:1929:38:1360:-94.8364,0,-145.757	0/1:80:37,43:37:1317:43:1548:-114.559,0,-93.363	0/1:265:126,139:126:4532:139:4992:-366.308,0,-169.972	0/1:96:61,35:61:2188:35:1256:-84.2879,0,-166.539	0/1:59:30,29:30:1076:29:1044:-76.3804,0,-79.1518	0/1:198:100,98:100:3534:98:3512:-255.396,0,-142.032	0/1:129:54,75:54:1940:75:2692:-201.994,0,-135.615	0/1:113:23,90:23:828:90:3232:-256.676,0,-40.6396	0/1:75:46,29:46:1633:29:1044:-71.5639,0,-66.4342	0/1:32:12,20:12:432:20:720:-55.4035,0,-14.4757	0/1:82:29,53:29:1044:53:1900:-146.355,0,-69.3533	0/1:49:28,21:28:1008:21:748:-52.8034,0,-74.7943	0/1:40:14,26:14:489:26:932:-71.8873,0,-32.1907	0/1:56:29,27:29:1044:27:964:-70.1002,0,-40.526	0/1:39:15,23:15:540:23:815:-61.7732,0,-37.0151	0/1:46:18,28:18:640:28:999:-75.7605,0,-43.9552	0/1:43:26,17:26:932:17:612:-42.3906,0,-71.0469	0/1:18:13,5:13:468:5:180:-11.1101,0,-36.9344	0/1:259:145,114:145:5178:114:4104:-287.328,0,-206.154	0/1:117:42,75:42:1508:75:2688:-205.249,0,-100.464	0/1:181:72,109:72:2573:109:3905:-296.661,0,-77.409	0/1:78:38,40:38:1349:40:1432:-104.502,0,-53.4127	0/1:88:56,32:56:2016:32:1131:-75.472,0,-154.765	0/1:95:24,71:24:864:71:2536:-199.581,0,-49.2962	0/1:260:147,113:147:5272:113:4040:-284.321,0,-199.723	0/1:198:39,159:39:1404:159:5708:-451.314,0,-65.9748	0/1:35:24,11:24:864:11:396:-25.3957,0,-67.3502	0/1:389:190,199:190:6809:199:7144:-525.022,0,-229.114	0/1:130:62,67:62:2224:67:2404:-177.269,0,-160.883	0/1:196:120,76:120:4308:76:2728:-185.565,0,-180.548	0/1:5:1,4:1:36:4:144:-11.7896,0,-2.08408	0/1:8:4,4:4:144:4:144:-10.8865,0,-10.8719	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	0/1:8:2,6:2:72:6:216:-17.3542,0,-4.41129	0/1:208:115,93:115:4117:93:3336:-237.423,0,-146.474	0/1:210:105,105:105:3764:105:3764:-275.276,0,-273.25	0/1:31:23,8:23:824:8:284:-16.537,0,-64.9759	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:174:120,54:120:4312:54:1931:-121.445,0,-334.909	0/1:20:14,6:14:504:6:216:-13.7418,0,-39.5626	0/1:145:63,82:63:2253:82:2952:-221.886,0,-158.876	0/1:50:25,25:25:896:25:896:-65.7963,0,-33.7937	0/1:54:29,25:29:1044:25:900:-64.9501,0,-41.2153	0/1:150:70,80:70:2520:80:2876:-212.372,0,-83.3444	0/1:143:53,90:53:1893:90:3215:-246.126,0,-127.174	0/1:285:118,167:118:4225:167:5992:-452.143,0,-148.025	0/1:174:60,114:60:2137:114:4096:-315.926,0,-65.6393	0/1:108:63,45:63:2268:45:1604:-111.943,0,-90.1581	0/1:116:52,64:52:1872:64:2292:-171.336,0,-61.2662	0/1:4:2,2:2:72:2:72:-5.62291,0,-4.1879	0/1:102:71,31:71:2556:31:1107:-69.0963,0,-199.021	0/1:46:20,26:20:716:26:919:-69.0684,0,-23.6813	0/1:17:5,12:5:180:12:432:-34.0481,0,-11.3929	0/1:108:73,35:73:2607:35:1252:-80.3181,0,-201.804	0/1:31:19,12:19:669:12:413:-27.0945,0,-27.6588	0/1:6:4,2:4:144:2:72:-5.02085,0,-5.64431	0/1:7:2,5:2:72:5:180:-14.4214,0,-1.67252	0/1:77:31,46:31:1116:46:1643:-124.774,0,-77.3252	0/1:116:77,39:77:2772:39:1400:-91.2029,0,-119.37	0/1:2:1,1:1:36:1:36:-2.99111,0,-1.48452	0/1:233:112,121:112:4024:121:4333:-319.457,0,-138.018	0/1:226:107,119:107:3844:119:4259:-314.923,0,-139.856	0/1:80:39,41:39:1400:41:1464:-107.793,0,-101.909	0/1:116:61,55:61:2177:55:1976:-142.945,0,-87.6964	0/1:199:79,120:79:2836:120:4312:-327.804,0,-96.7504	0/1:84:62,22:62:2217:22:792:-46.2176,0,-95.1602	0/1:5:3,2:3:108:2:72:-5.32188,0,-8.54469	0/1:84:37,47:37:1328:47:1669:-125.002,0,-94.2385	0/1:92:58,34:58:2084:34:1224:-82.6156,0,-79.3939	0/1:12:5,7:5:180:7:244:-18.66,0,-5.98593	0/1:159:69,90:69:2484:90:3228:-242.472,0,-175.386	0/1:44:13,31:13:464:31:1116:-86.5941,0,-28.7504	0/1:129:47,82:47:1688:82:2939:-224.356,0,-112.995	0/1:150:78,72:78:2799:72:2584:-185.971,0,-110.938	0/1:133:93,40:93:3313:40:1427:-88.5124,0,-256.46	0/1:66:45,21:45:1612:21:752:-48.0441,0,-125.153	0/1:5:2,3:2:72:3:108:-8.55573,0,-5.31438	0/1:123:68,55:68:2440:55:1976:-140.838,0,-182.283	0/1:146:54,92:54:1940:92:3295:-251.632,0,-130.49	0/1:235:114,121:114:4096:121:4343:-316.196,0,-151.654	0/1:124:68,56:68:2428:56:2016:-144.127,0,-99.8102	0/1:19:16,3:16:576:3:108:-4.34131,0,-25.8977	0/1:35:21,14:21:756:14:504:-35.1019,0,-33.1935	0/1:91:67,24:67:2404:24:864:-50.5781,0,-110.802	0/1:50:29,21:29:1040:21:752:-52.8606,0,-77.3682	0/1:77:34,43:34:1216:43:1523:-114,0,-86.2993	0/1:62:32,30:32:1140:30:1080:-78.7111,0,-84.0063	0/1:7:5,2:5:180:2:72:-4.71982,0,-14.4032	0/1:37:28,9:28:1004:9:324:-18.3259,0,-79.3138	0/1:29:19,10:19:684:10:352:-22.0514,0,-28.5197	0/1:135:63,72:63:2245:72:2588:-192.201,0,-87.2332	0/1:83:36,47:36:1296:47:1675:-125.844,0,-46.8982
chr01	9682685	.	A	C	76331.4	PASS	AB=0.499332;ABP=3.04509;AC=95;AF=0.510753;AN=186;AO=4492;CIGAR=1X;DP=8992;DPB=8992;DPRA=0;EPP=9558.51;EPPR=112.829;GTI=1;LEN=1;MEANALT=1.01075;MQM=53.8437;MQMR=34.7371;NS=93;NUMALT=1;ODDS=0.417051;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160288;QR=161007;RO=4499;RPL=4469;RPP=9558.51;RPPR=112.829;RPR=23;RUN=1;SAF=4492;SAP=9757.26;SAR=0;SRF=4499;SRP=9772.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:9,4:9:324:4:144:-9.38135,0,-25.5183	0/1:90:54,36:54:1921:36:1292:-89.328,0,-145.65	0/1:82:38,44:38:1364:44:1572:-116.12,0,-96.9808	0/1:270:130,140:130:4607:140:4975:-363.299,0,-177.329	0/1:96:61,35:61:2173:35:1248:-83.573,0,-165.196	0/1:61:32,29:32:1137:29:1032:-74.7053,0,-84.0206	0/1:194:101,93:101:3598:93:3332:-240.097,0,-145.917	0/1:125:54,71:54:1940:71:2519:-187.672,0,-136.82	0/1:112:23,89:23:828:89:3171:-251.511,0,-40.9406	0/1:76:46,30:46:1641:30:1072:-73.7814,0,-67.524	0/1:31:11,20:11:396:20:712:-54.9879,0,-12.9	0/1:77:29,48:29:1044:48:1711:-130.884,0,-70.8585	0/1:48:28,20:28:1008:20:716:-50.2287,0,-75.0953	0/1:38:14,24:14:504:24:848:-65.1009,0,-34.1441	0/1:56:29,27:29:1040:27:964:-70.1002,0,-40.5083	0/1:39:15,23:15:540:23:824:-62.5816,0,-37.0151	0/1:46:18,28:18:648:28:1008:-75.8723,0,-44.6726	0/1:43:26,17:26:936:17:590:-40.4121,0,-71.4026	0/1:18:13,5:13:468:5:180:-11.1101,0,-36.9344	0/1:261:146,115:146:5221:115:4103:-286.653,0,-207.315	0/1:118:44,74:44:1569:74:2632:-200.27,0,-105.635	0/1:180:72,108:72:2580:108:3859:-292.841,0,-77.5989	0/1:78:38,40:38:1364:40:1408:-102.347,0,-53.6708	0/1:87:55,32:55:1980:32:1143:-76.8457,0,-151.836	0/1:94:24,70:24:860:70:2511:-197.626,0,-49.2414	0/1:259:149,110:149:5303:110:3911:-273.034,0,-202.162	0/1:196:41,155:41:1468:155:5526:-435.587,0,-72.3308	0/1:35:24,11:24:864:11:396:-25.3957,0,-67.3502	0/1:385:191,194:191:6834:194:6940:-507.909,0,-233.671	0/1:132:63,69:63:2252:69:2464:-181.975,0,-162.713	0/1:195:121,74:121:4348:74:2656:-180.25,0,-185.621	0/1:5:1,4:1:36:4:144:-11.7896,0,-2.08408	0/1:8:4,4:4:144:4:144:-10.8865,0,-10.8719	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:8:2,6:2:72:6:216:-17.3542,0,-4.41129	0/1:208:115,93:115:4136:93:3332:-237.067,0,-146.618	0/1:210:106,104:106:3808:104:3707:-270.162,0,-277.198	0/1:31:23,8:23:824:8:284:-16.537,0,-64.9759	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:174:119,55:119:4257:55:1976:-125.485,0,-329.983	0/1:20:14,6:14:504:6:216:-13.7418,0,-39.5626	0/1:145:63,82:63:2268:82:2936:-220.459,0,-160.219	0/1:49:24,25:24:864:25:896:-66.0973,0,-32.2348	0/1:53:28,25:28:993:25:900:-65.2511,0,-39.3804	0/1:150:71,79:71:2540:79:2819:-207.262,0,-84.9987	0/1:140:53,87:53:1900:87:3103:-236.971,0,-128.711	0/1:284:120,164:120:4274:164:5835:-439.055,0,-152.393	0/1:173:57,116:57:2040:116:4154:-321.441,0,-57.8295	0/1:108:64,44:64:2274:44:1576:-109.423,0,-90.4353	0/1:113:51,62:51:1836:62:2219:-165.679,0,-60.379	0/1:4:2,2:2:72:2:72:-5.62291,0,-4.1879	0/1:102:71,31:71:2556:31:1108:-69.1886,0,-199.021	0/1:45:20,25:20:705:25:880:-65.8699,0,-22.6484	0/1:17:5,12:5:180:12:424:-33.3288,0,-11.3929	0/1:111:76,35:76:2728:35:1248:-79.0576,0,-211.754	0/1:31:19,12:19:684:12:432:-28.8106,0,-27.9176	0/1:7:5,2:5:180:2:72:-4.71982,0,-7.13319	0/1:7:2,5:2:72:5:176:-14.0572,0,-1.67252	0/1:78:32,46:32:1144:46:1644:-124.565,0,-79.5436	0/1:117:78,39:78:2804:39:1396:-90.5445,0,-120.929	0/1:2:1,1:1:36:1:32:-2.59521,0,-1.48452	0/1:233:114,119:114:4074:119:4252:-312.195,0,-141.454	0/1:224:105,119:105:3765:119:4236:-313.467,0,-135.387	0/1:79:39,40:39:1404:40:1387:-101.184,0,-102.565	0/1:114:61,53:61:2177:53:1879:-134.845,0,-88.2984	0/1:196:78,118:78:2789:118:4207:-319.294,0,-95.5356	0/1:85:63,22:63:2223:22:788:-45.5585,0,-96.2215	0/1:5:3,2:3:108:2:72:-5.32188,0,-8.54469	0/1:86:38,48:38:1353:48:1702:-127.369,0,-95.8774	0/1:92:58,34:58:2073:34:1212:-81.5432,0,-79.1904	0/1:12:5,7:5:180:7:248:-19.022,0,-5.98593	0/1:158:70,88:70:2512:88:3146:-235.408,0,-178.208	0/1:43:13,30:13:468:30:1080:-83.6566,0,-29.4086	0/1:126:47,79:47:1688:79:2797:-212.518,0,-113.898	0/1:150:79,71:79:2825:71:2543:-182.288,0,-111.53	0/1:134:95,39:95:3389:39:1391:-84.9774,0,-262.974	0/1:66:45,21:45:1597:21:744:-47.3277,0,-123.809	0/1:5:2,3:2:72:3:108:-8.55573,0,-5.31438	0/1:123:68,55:68:2436:55:1968:-140.124,0,-181.929	0/1:144:55,89:55:1972:89:3180:-241.911,0,-133.968	0/1:233:115,118:115:4109:118:4214:-305.221,0,-154.179	0/1:123:68,55:68:2444:55:1955:-138.96,0,-100.182	0/1:19:16,3:16:576:3:108:-4.34131,0,-25.8977	0/1:33:20,13:20:720:13:468:-32.4654,0,-30.553	0/1:91:68,23:68:2448:23:828:-47.3443,0,-113.052	0/1:50:29,21:29:1040:21:756:-53.2188,0,-77.3682	0/1:77:35,42:35:1241:42:1491:-111.123,0,-88.5401	0/1:62:32,30:32:1152:30:1080:-78.7111,0,-85.0726	0/1:7:5,2:5:180:2:72:-4.71982,0,-14.4032	0/1:38:29,9:29:1040:9:320:-17.6642,0,-82.2431	0/1:27:18,9:18:648:9:316:-20.6148,0,-27.2443	0/1:134:63,71:63:2253:71:2544:-188.554,0,-86.4937	0/1:84:38,46:38:1360:46:1652:-123.473,0,-49.9795
chr01	9682691	.	T	C	67017.4	PASS	AB=0.497529;ABP=3.48244;AC=91;AF=0.489247;AN=186;AO=4430;CIGAR=1X;DP=8909;DPB=8909;DPRA=39.1385;EPP=121.664;EPPR=9614.27;GTI=2;LEN=1;MEANALT=1.01099;MQM=34.6217;MQMR=53.8343;NS=93;NUMALT=1;ODDS=0.211727;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158176;QR=160137;RO=4478;RPL=1969;RPP=121.664;RPPR=9614.27;RPR=2461;RUN=1;SAF=4430;SAP=9622.63;SAR=0;SRF=4478;SRP=9726.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:5,9:5:180:9:324:-25.2173,0,-12.3142	0/1:89:35,54:35:1256:54:1928:-146.584,0,-86.3951	0/1:79:43,36:43:1544:36:1273:-90.8205,0,-114.503	0/1:259:137,122:137:4875:122:4359:-166.477,0,-357.971	0/1:94:35,59:35:1260:59:2107:-159.87,0,-85.2474	0/1:59:28,31:28:1008:31:1107:-81.9332,0,-73.1465	0/1:199:98,101:98:3504:101:3611:-144.48,0,-254.377	0/1:125:71,54:71:2537:54:1916:-134.673,0,-189.273	0/1:113:90,23:90:3219:23:820:-39.9278,0,-255.514	0/1:76:30,46:30:1076:46:1648:-66.3911,0,-74.1391	0/1:32:20,12:20:720:12:428:-14.458,0,-55.4035	0/1:78:49,29:49:1727:29:1029:-69.2117,0,-132.021	0/1:48:20,28:20:720:28:1008:-75.0953,0,-50.587	0/1:39:25,14:25:896:14:495:-33.0351,0,-68.9543	0/1:55:26,29:26:936:29:1040:-40.8094,0,-67.8829	0/1:38:23,15:23:828:15:540:-37.3744,0,-63.2988	0/1:45:27,18:27:959:18:644:-44.6126,0,-72.1042	0/1:43:17,26:17:608:26:936:-71.4026,0,-42.0319	0/1:18:5,13:5:180:13:468:-36.9344,0,-11.1101	0/1:260:114,146:114:4092:146:5216:-207.786,0,-285.957	0/1:116:72,44:72:2580:44:1562:-105.619,0,-195.849	0/1:178:107,71:107:3848:71:2526:-74.4419,0,-292.446	0/1:77:39,38:39:1379:38:1347:-53.8615,0,-100.693	0/1:88:32,56:32:1148:56:1987:-152.188,0,-76.9945	0/1:95:70,25:70:2504:25:891:-51.7214,0,-196.704	0/1:254:112,142:112:3982:142:5037:-190.406,0,-281.617	0/1:195:157,38:157:5617:38:1356:-63.3518,0,-443.605	0/1:35:11,24:11:387:24:864:-67.3502,0,-24.5829	0/1:384:197,187:197:7044:187:6680:-225.221,0,-517.551	0/1:132:68,64:68:2444:64:2271:-164.431,0,-180.169	0/1:194:73,121:73:2597:121:4335:-184.476,0,-175.257	0/1:5:4,1:4:144:1:36:-2.08408,0,-11.7896	0/1:8:4,4:4:140:4:144:-10.8719,0,-10.5203	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/1:8:6,2:6:201:2:72:-4.41129,0,-15.9853	0/1:205:91,114:91:3241:114:4066:-144.09,0,-229.8	0/1:207:105,102:105:3745:102:3656:-264.938,0,-273.991	0/1:31:8,23:8:288:23:820:-64.62,0,-16.8982	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/1:171:55,116:55:1976:116:4151:-321.38,0,-126.388	0/1:20:6,14:6:216:14:495:-38.7547,0,-13.7418	0/1:145:84,61:84:3008:61:2162:-150.733,0,-226.931	0/1:49:25,24:25:881:24:856:-30.8312,0,-64.7473	0/1:53:25,28:25:896:28:999:-39.4763,0,-64.8932	0/1:148:78,70:78:2796:70:2495:-83.7459,0,-206.122	0/1:136:83,53:83:2968:53:1886:-128.664,0,-226.045	0/1:278:160,118:160:5679:118:4236:-149.346,0,-426.72	0/1:174:115,59:115:4128:59:2103:-63.1919,0,-318.803	0/1:106:44,62:44:1584:62:2220:-87.4748,0,-110.74	0/1:116:66,50:66:2360:50:1788:-57.6433,0,-177.447	0/1:4:2,2:2:72:2:72:-4.1879,0,-5.62291	0/1:102:31,71:31:1104:71:2540:-197.597,0,-68.831	0/1:45:25,20:25:900:20:720:-23.9965,0,-67.6594	0/1:16:11,5:11:396:5:180:-11.694,0,-31.1152	0/1:105:35,70:35:1252:70:2494:-192.573,0,-81.2212	0/1:31:12,19:12:432:19:676:-27.8823,0,-28.8106	0/1:7:2,5:2:72:5:180:-7.13319,0,-4.71982	0/1:7:5,2:5:180:2:68:-1.65766,0,-14.4214	0/1:79:48,31:48:1724:31:1108:-76.0178,0,-131.446	0/1:110:33,76:33:1188:76:2696:-118.987,0,-74.0512	0/1:2:1,1:1:36:1:36:-1.48452,0,-2.99111	0/1:233:121,112:121:4321:112:3984:-138.217,0,-318.387	0/1:222:117,105:117:4169:105:3772:-135.942,0,-308.05	0/1:75:38,37:38:1364:37:1324:-96.5948,0,-100.311	0/1:113:52,61:52:1853:61:2192:-88.52,0,-132.799	0/1:194:116,78:116:4164:78:2800:-96.3777,0,-316.017	0/1:83:21,62:21:756:62:2224:-96.3671,0,-43.2848	0/1:5:2,3:2:72:3:104:-8.17738,0,-5.32188	0/1:84:46,38:46:1639:38:1352:-96.4031,0,-122.309	0/1:92:34,58:34:1220:58:2062:-77.8152,0,-82.2582	0/1:12:7,5:7:248:5:180:-5.98593,0,-19.022	0/1:158:87,71:87:3105:71:2523:-179.217,0,-231.726	0/1:44:31,13:31:1108:13:468:-29.1076,0,-85.8789	0/1:123:77,46:77:2741:46:1635:-110.058,0,-208.382	0/1:153:74,79:74:2656:79:2819:-111.505,0,-191.535	0/1:132:40,92:40:1440:92:3291:-254.779,0,-89.9776	0/1:65:20,45:20:716:45:1612:-125.449,0,-45.1112	0/1:5:3,2:3:108:2:72:-5.31438,0,-8.55573	0/1:121:54,67:54:1935:67:2396:-178.946,0,-137.757	0/1:144:91,53:91:3260:53:1904:-127.862,0,-249.093	0/1:230:118,112:118:4217:112:3996:-149.391,0,-306.39	0/1:122:56,66:56:2012:66:2368:-95.355,0,-144.373	0/1:17:3,14:3:108:14:504:-21.3821,0,-4.94337	0/1:32:12,20:12:432:20:720:-30.8598,0,-29.5326	0/1:91:24,67:24:860:67:2387:-110.692,0,-50.2202	0/1:50:21,29:21:756:29:1044:-77.7237,0,-53.2188	0/1:76:42,34:42:1496:34:1220:-86.9557,0,-111.874	0/1:61:30,31:30:1076:31:1093:-80.087,0,-78.6545	0/1:7:2,5:2:72:5:176:-14.0412,0,-4.71982	0/1:36:9,27:9:324:27:955:-75.224,0,-18.6269	0/1:29:10,19:10:360:19:675:-28.4443,0,-22.772	0/1:133:70,63:70:2504:63:2260:-87.7653,0,-185.265	0/1:83:45,38:45:1603:38:1356:-50.2629,0,-119.376
chr01	10026838	.	A	G	32060.3	PASS	AB=0.604542;ABP=287.228;AC=38;AF=0.206522;AN=184;AO=1824;CIGAR=1X;DP=5803;DPB=5803;DPRA=1.69718;EPP=3963.78;EPPR=8643.3;GTI=8;LEN=1;MEANALT=1;MQM=59.864;MQMR=59.1772;NS=92;NUMALT=1;ODDS=1.00905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65280;QR=140837;RO=3979;RPL=0;RPP=3963.78;RPPR=8643.3;RPR=1824;RUN=1;SAF=1824;SAP=3963.78;SAR=0;SRF=3979;SRP=8643.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.327	0/1:84:33,51:33:1127:51:1828:-139.514,0,-76.3688	0/0:78:78,0:78:2724:0:0:0,-23.4803,-245.316	0/0:91:91,0:91:3234:0:0:0,-27.3937,-290.019	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.731	0/0:16:16,0:16:546:0:0:0,-4.81648,-49.329	0/1:85:61,24:61:2184:24:864:-52.495,0,-170.724	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.571	0/0:75:75,0:75:2639:0:0:0,-22.5772,-237.608	0/0:62:62,0:62:2185:0:0:0,-18.6639,-196.763	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.668	0/0:89:89,0:89:3188:0:0:0,-26.7917,-286.266	0/1:78:27,51:27:972:51:1828:-141.314,0,-64.1185	0/0:49:49,0:49:1729:0:0:0,-14.7505,-155.837	0/1:60:32,28:32:1148:28:1004:-72.5691,0,-85.568	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.276	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.979	0/1:27:16,11:16:576:11:392:-27.4922,0,-44.0468	0/1:40:18,22:18:648:22:788:-59.2003,0,-46.6103	0/1:141:37,104:37:1317:104:3713:-291.925,0,-76.3709	0/1:141:41,100:41:1468:100:3569:-278.831,0,-89.9347	0/1:59:11,48:11:377:48:1728:-138.045,0,-16.496	0/0:42:42,0:42:1478:0:0:0,-12.6433,-133.28	0/1:63:49,14:49:1730:14:504:-26.7332,0,-136.79	0/0:46:46,0:46:1622:0:0:0,-13.8474,-146.26	0/1:109:35,74:35:1233:74:2630:-204.132,0,-78.4596	0/0:129:129,0:129:4582:0:0:0,-38.8329,-412.132	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.326	0/1:150:28,122:28:970:122:4364:-347.673,0,-42.3658	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.739	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.836	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:161:0:0:0,-1.50515,-14.8066	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4866	0/1:190:96,94:96:3432:94:3380:-247.2,0,-251.864	0/0:22:22,0:22:765:0:0:0,-6.62266,-69.1567	0/1:51:23,28:23:824:28:1008:-75.6838,0,-59.1308	0/1:3:1,2:1:36:2:72:-4.49753,0,-2.69518	0/1:166:85,81:85:2965:81:2908:-211.976,0,-216.577	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.032	0/0:89:89,0:89:3177:0:0:0,-26.7917,-285.442	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.11	0/0:61:61,0:61:2150:0:0:0,-18.3628,-193.46	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.109	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1917	0/1:106:26,80:26:932:80:2861:-225.803,0,-52.2897	0/1:96:33,63:33:1184:63:2260:-174.763,0,-77.3105	0/1:108:38,70:38:1330:70:2512:-193.821,0,-87.4799	0/1:101:51,50:51:1801:50:1788:-130.787,0,-131.95	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:55:55,0:55:1934:0:0:0,-16.5566,-174.195	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.445	.:.:.:.:.:.:.:.	0/0:77:77,0:77:2689:0:0:0,-23.1793,-241.984	0/0:34:34,0:34:1190:0:0:0,-10.235,-107.39	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3052	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:44:44,0:44:1538:0:0:0,-13.2453,-138.618	0/0:78:77,1:77:2764:1:36:0,-19.8821,-245.092	.:.:.:.:.:.:.:.	0/0:75:75,0:75:2639:0:0:0,-22.5772,-236.375	0/1:110:40,70:40:1413:70:2505:-192.587,0,-94.3052	0/0:49:49,0:49:1721:0:0:0,-14.7505,-154.907	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7402	0/0:81:77,4:77:2670:4:144:0,-11.0698,-226.92	0/0:79:77,2:77:2692:2:72:0,-16.9446,-235.358	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.186	0/0:48:47,1:47:1676:1:36:0,-10.8512,-147.457	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.639	0/0:12:12,0:12:409:0:0:0,-3.61236,-37.1336	0/1:98:49,49:49:1737:49:1764:-129.543,0,-126.88	0/1:66:20,46:20:693:46:1656:-129.46,0,-42.814	0/1:111:34,77:34:1200:77:2752:-214.491,0,-74.8597	0/0:114:114,0:114:3961:0:0:0,-34.3174,-356.648	0/1:25:6,19:6:216:19:661:-52.2857,0,-12.2648	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.04	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:73:30,43:30:1031:43:1544:-117.27,0,-71.0252	0/1:52:15,37:15:536:37:1309:-102.451,0,-32.9204	0/1:188:70,118:70:2474:118:4197:-321.29,0,-166.304	0/1:51:19,32:19:680:32:1140:-87.5567,0,-46.1743	0/1:69:33,36:33:1180:36:1292:-95.8127,0,-85.7194	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/1:117:53,64:53:1900:64:2287:-170.869,0,-136.03	0/1:20:11,9:11:392:9:324:-23.4853,0,-29.5065	0/0:66:66,0:66:2334:0:0:0,-19.868,-210.275	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.25	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.084	0/1:78:40,38:40:1421:38:1364:-99.5754,0,-104.56	0/1:78:23,55:23:793:55:1980:-154.989,0,-48.2048	0/0:63:63,0:63:2207:0:0:0,-18.9649,-198.614	0/0:109:109,0:109:3899:0:0:0,-32.8123,-350.658
chr01	10026879	.	A	C	219231	PASS	AB=0.428668;ABP=264.164;AC=152;AF=0.808511;AN=188;AO=8245;CIGAR=1X;DP=11645;DPB=11645;DPRA=0;EPP=17906.8;EPPR=7355.62;GTI=9;LEN=1;MEANALT=1.07447;MQM=59.5955;MQMR=59.9475;NS=94;NUMALT=1;ODDS=0.967107;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=292983;QR=120003;RO=3390;RPL=4101;RPP=3.49727;RPPR=34.013;RPR=4144;RUN=1;SAF=4101;SAP=3.49727;SAR=4144;SRF=1806;SRP=34.5793;SRR=1584;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:78:0,78:0:0:78:2778:-250.124,-23.4803,0	0/1:155:88,67:88:3098:67:2371:-166.948,0,-232.385	1/1:114:0,114:0:0:114:4041:-363.829,-34.3174,0	1/1:202:0,202:0:0:202:7173:-645.069,-60.8081,0	1/1:60:0,60:0:0:60:2115:-190.594,-18.0618,0	1/1:21:0,21:0:0:21:743:-67.0585,-6.32163,0	0/1:121:47,74:47:1669:74:2611:-198.295,0,-114.071	1/1:96:0,96:0:0:96:3400:-306.16,-28.8989,0	1/1:112:0,111:0:0:111:3926:-353.054,-33.4143,0	1/1:143:0,143:0:0:143:5068:-456.239,-43.0473,0	1/1:129:1,128:1:36:128:4531:-404.327,-35.2346,0	1/1:157:1,156:1:21:156:5528:-494.258,-45.1618,0	0/1:143:79,64:79:2823:64:2278:-162.035,0,-211.185	1/1:115:0,115:0:0:115:4061:-365.571,-34.6185,0	0/1:147:76,71:76:2681:71:2503:-181.264,0,-197.236	1/1:81:0,81:0:0:81:2896:-260.642,-24.3834,0	1/1:121:0,121:0:0:121:4314:-388.423,-36.4246,0	0/1:89:42,47:42:1474:47:1661:-122.946,0,-106.161	0/1:91:45,46:45:1585:46:1648:-121.214,0,-115.536	0/1:173:118,54:118:4202:54:1931:-121.915,0,-326.223	0/1:226:151,75:151:5361:75:2651:-170.8,0,-414.588	0/1:104:75,29:75:2608:29:1040:-62.5632,0,-203.655	1/1:77:0,77:0:0:77:2750:-247.707,-23.1793,0	0/1:124:17,107:17:604:107:3814:-305.901,0,-17.3629	1/1:74:0,74:0:0:74:2647:-238.471,-22.2762,0	0/1:323:209,114:209:7443:114:4076:-269.786,0,-572.684	1/1:219:1,217:1:36:217:7741:-692.741,-62.3861,0	1/1:79:0,79:0:0:79:2815:-253.377,-23.7814,0	0/1:271:178,93:178:6268:93:3314:-216.724,0,-482.634	1/1:90:0,90:0:0:90:3185:-286.829,-27.0927,0	1/1:72:0,72:0:0:72:2556:-230.275,-21.6742,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:9:0,9:0:0:9:315:-28.6812,-2.70927,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:7:0,7:0:0:7:243:-22.1425,-2.10721,0	0/1:413:195,218:195:6874:218:7728:-571.197,0,-494.364	1/1:101:0,101:0:0:101:3603:-324.466,-30.404,0	0/1:115:56,59:56:1979:59:2103:-154.92,0,-143.766	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:246:127,119:127:4466:119:4242:-307.642,0,-328.046	1/1:83:0,83:0:0:83:2980:-268.403,-24.9855,0	1/1:126:0,126:0:0:126:4464:-401.664,-37.9298,0	1/1:145:0,145:0:0:145:5151:-463.547,-43.6494,0	1/1:135:0,135:0:0:135:4759:-428.418,-40.6391,0	1/1:83:1,82:1:36:82:2921:-259.469,-21.3872,0	1/1:85:1,84:1:36:84:2980:-264.833,-21.9893,0	0/1:243:152,91:152:5403:91:3255:-220.02,0,-413.235	0/1:211:118,89:118:4198:89:3167:-222.06,0,-315.326	0/1:198:127,71:127:4525:71:2525:-167.892,0,-347.814	0/1:189:100,89:100:3592:89:3192:-230.591,0,-266.583	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:90:1,89:1:36:89:3175:-282.319,-23.4944,0	1/1:55:0,55:0:0:55:1952:-175.929,-16.5567,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:136:0,136:0:0:136:4827:-434.198,-40.9401,0	1/1:53:0,53:0:0:53:1887:-170.097,-15.9546,0	1/1:9:0,9:0:0:9:298:-27.1396,-2.70927,0	0/1:19:13,6:13:453:6:216:-14.0709,0,-35.3801	1/1:62:0,62:0:0:62:2192:-197.441,-18.6639,0	1/1:182:2,180:2:72:180:6391:-568.147,-47.9507,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:213:2,211:2:72:211:7503:-667.166,-57.2827,0	0/1:221:151,69:151:5382:69:2435:-152.932,0,-418.075	1/1:107:0,107:0:0:107:3810:-342.989,-32.2102,0	1/1:60:0,60:0:0:60:2120:-191.039,-18.0618,0	1/1:195:6,189:6:216:189:6731:-585.705,-38.9103,0	1/1:105:2,103:2:72:103:3664:-323.015,-24.7714,0	1/1:72:0,72:0:0:72:2560:-230.594,-21.6742,0	1/1:95:1,94:1:32:94:3311:-294.838,-25.3985,0	1/1:133:0,133:0:0:133:4739:-426.655,-40.037,0	1/1:34:0,34:0:0:34:1220:-110.102,-10.235,0	0/1:136:77,59:77:2744:59:2112:-149.177,0,-206.263	0/1:143:76,67:76:2687:67:2404:-173.379,0,-199.026	0/1:163:107,56:107:3832:56:1995:-130.711,0,-295.971	1/1:224:0,224:0:0:224:7930:-713.534,-67.4307,0	0/1:67:49,18:49:1709:18:648:-38.4829,0,-133.921	1/1:174:1,173:1:36:173:6174:-552.122,-48.7809,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:186:101,85:101:3538:85:3029:-216.808,0,-262.627	0/1:95:64,31:64:2281:31:1103:-70.9814,0,-176.944	0/1:333:203,130:203:7196:130:4642:-317.686,0,-547.44	0/1:149:78,71:78:2760:71:2540:-183.995,0,-203.788	0/1:127:59,68:59:2061:68:2400:-178.007,0,-147.527	1/1:150:0,150:0:0:150:5285:-475.788,-45.1545,0	0/1:274:142,132:142:4981:132:4673:-338.225,0,-365.951	0/1:59:24,35:24:860:35:1243:-94.3208,0,-59.9611	1/1:150:0,150:0:0:150:5305:-477.564,-45.1545,0	1/1:157:0,157:0:0:157:5555:-499.803,-47.2617,0	1/1:63:0,63:0:0:63:2241:-201.93,-18.9649,0	0/1:155:81,74:81:2854:74:2623:-189.636,0,-210.435	0/1:192:138,53:138:4859:53:1891:-112.611,0,-379.606	1/1:127:0,127:0:0:127:4529:-407.721,-38.2308,0	1/1:233:1,231:1:36:231:8216:-735.637,-66.6005,0
chr01	10026994	.	G	A	80859.5	PASS	AB=0.508079;ABP=7.11544;AC=36;AF=0.191489;AN=188;AO=3705;CIGAR=1X;DP=15746;DPB=15746;DPRA=1.53237;EPP=8048.32;EPPR=26141;GTI=4;LEN=1;MEANALT=1.06667;MQM=49.1239;MQMR=56.4612;NS=94;NUMALT=1;ODDS=1.17413;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131831;QR=425943;RO=12037;RPL=1757;RPP=24.3915;RPPR=128.79;RPR=1948;RUN=1;SAF=1757;SAP=24.3915;SAR=1948;SRF=5601;SRP=128.79;SRR=6436;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1501:0:0:0,-12.9443,-134.525	0/1:217:121,96:121:4293:96:3431:-231.08,0,-318.534	0/0:232:232,0:232:8227:0:0:0,-69.839,-739.098	0/0:256:256,0:256:9035:0:0:0,-77.0637,-812.121	0/0:101:101,0:101:3541:0:0:0,-30.404,-317.686	0/0:96:96,0:96:3406:0:0:0,-28.8989,-305.804	0/1:288:129,159:129:4585:159:5617:-403.663,0,-325.633	0/0:230:230,0:230:8139:0:0:0,-69.2369,-730.645	0/0:104:104,0:104:3684:0:0:0,-31.3071,-329.534	0/0:205:205,0:205:7230:0:0:0,-61.7111,-648.636	0/0:211:211,0:211:7481:0:0:0,-63.5173,-672.927	0/0:169:169,0:169:5985:0:0:0,-50.8741,-536.676	0/1:144:76,68:76:2706:68:2393:-164.606,0,-197.854	0/0:195:195,0:195:6898:0:0:0,-58.7008,-619.999	0/1:109:60,49:60:2135:49:1744:-121.204,0,-159.536	0/0:104:104,0:104:3657:0:0:0,-31.3071,-328.799	0/0:202:202,0:202:7174:0:0:0,-60.8081,-643.884	0/1:123:68,55:68:2405:55:1958:-131.851,0,-178.787	0/1:127:59,68:59:2102:68:2440:-171.846,0,-150.842	0/1:250:112,138:112:3924:138:4931:-357.847,0,-277.701	0/1:266:129,137:129:4483:137:4856:-347.019,0,-323.025	0/1:195:55,140:55:1963:140:4966:-382.01,0,-118.196	0/0:124:124,0:124:4375:0:0:0,-37.3277,-393.538	0/0:179:171,8:171:6077:8:284:0,-28.5249,-519.778	0/0:147:147,0:147:5214:0:0:0,-44.2514,-468.245	0/1:485:281,204:281:9894:204:7202:-492.584,0,-743.336	0/0:290:290,0:290:10287:0:0:0,-87.2987,-922.818	0/0:78:78,0:78:2787:0:0:0,-23.4803,-250.333	0/1:371:163,208:163:5724:208:7436:-541.57,0,-403.158	0/0:166:164,2:164:5820:2:72:0,-43.3344,-516.782	0/0:149:147,2:147:5222:2:72:0,-38.0167,-462.982	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.2738	0/0:45:45,0:45:1594:0:0:0,-13.5463,-143.191	0/1:20:15,5:15:536:5:172:-8.97843,0,-42.458	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.2251	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.0005	0/1:419:196,222:196:6935:222:7896:-574.857,0,-497.717	0/0:194:194,0:194:6838:0:0:0,-58.3998,-613.628	0/1:201:103,98:103:3651:98:3475:-237.73,0,-267.749	1/1:3:0,3:0:0:3:108:-9.87854,-0.90309,0	0/1:214:83,131:83:2941:131:4658:-339.389,0,-199.908	0/0:87:87,0:87:3076:0:0:0,-26.1896,-276.779	0/0:185:183,2:183:6470:2:72:0,-48.8538,-574.257	0/0:156:156,0:156:5535:0:0:0,-46.9607,-497.448	0/0:138:138,0:138:4881:0:0:0,-41.5421,-437.508	0/0:112:112,0:112:3977:0:0:0,-33.7154,-357.43	0/0:226:225,1:225:7964:1:36:0,-64.4345,-711.304	0/1:262:124,138:124:4390:138:4895:-350.597,0,-316.246	0/1:186:92,94:92:3235:94:3327:-237.079,0,-234.757	0/1:204:104,99:104:3706:99:3527:-249.14,0,-272.003	0/1:292:127,165:127:4518:165:5903:-437.766,0,-318.358	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4869	0/0:269:269,0:269:9539:0:0:0,-80.9771,-856.097	0/0:110:110,0:110:3905:0:0:0,-33.1133,-351.406	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.3248	0/0:183:183,0:183:6510:0:0:0,-55.0885,-583.942	0/0:71:71,0:71:2517:0:0:0,-21.3731,-226.734	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0255	0/1:41:25,16:25:884:16:576:-39.1841,0,-67.2455	0/0:101:101,0:101:3563:0:0:0,-30.404,-320.588	0/0:282:281,1:281:9967:1:36:0,-81.436,-892.084	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.3862	0/0:235:234,1:234:8299:1:36:0,-67.221,-743.004	0/1:256:152,104:152:5414:104:3686:-246.755,0,-409.877	0/0:101:100,1:100:3570:1:36:0,-26.8058,-317.579	0/0:106:106,0:106:3724:0:0:0,-31.9092,-335.058	0/0:295:295,0:295:10420:0:0:0,-88.8038,-934.273	0/0:269:266,3:266:9391:3:108:0,-70.9019,-834.053	0/0:89:89,0:89:3162:0:0:0,-26.7917,-284.089	0/0:129:129,0:129:4565:0:0:0,-38.8329,-410.1	0/0:193:193,0:193:6783:0:0:0,-58.0988,-609.894	0/0:36:36,0:36:1269:0:0:0,-10.8371,-114.404	0/1:198:99,99:99:3514:99:3531:-243.908,0,-256.153	0/1:107:63,44:63:2219:44:1572:-102.972,0,-167.29	0/1:209:97,111:97:3441:111:3939:-279.993,0,-245.099	0/0:226:226,0:226:8011:0:0:0,-68.0328,-720.007	0/1:195:114,81:114:4044:81:2866:-192.176,0,-304.156	0/0:169:167,2:167:5905:2:72:0,-44.3216,-523.432	0/0:19:19,0:19:684:0:0:0,-5.71957,-60.9922	0/1:158:85,73:85:3009:73:2589:-176.754,0,-223.144	0/1:210:102,108:102:3600:108:3845:-265.068,0,-258.662	0/1:340:164,176:164:5801:176:6265:-448.804,0,-418.609	0/1:211:105,106:105:3692:106:3771:-268.103,0,-266.981	0/1:131:74,57:74:2595:57:2027:-139.665,0,-194.25	0/0:171:171,0:171:6024:0:0:0,-51.4761,-541.729	0/1:290:154,136:154:5439:136:4868:-340.808,0,-402.032	0/1:88:44,44:44:1576:44:1584:-110.244,0,-114.942	0/0:170:170,0:170:5970:0:0:0,-51.1751,-536.035	0/0:153:153,0:153:5463:0:0:0,-46.0576,-490.449	0/0:138:137,0:137:4882:0:0:0,-41.2411,-438.311	0/1:266:124,142:124:4419:142:5074:-362.572,0,-316.994	0/1:168:60,108:60:2130:108:3879:-289.993,0,-140.797	0/0:165:165,0:165:5782:0:0:0,-49.6699,-517.292	0/0:253:253,0:253:8898:0:0:0,-76.1606,-799.001
chr01	10181951	.	C	T	146775	PASS	AB=0.489171;ABP=6.30245;AC=153;AF=0.81383;AN=188;AO=5448;CIGAR=1X;DP=7118;DPB=7118;DPRA=0;EPP=5.82269;EPPR=18.7815;GTI=4;LEN=1;MEANALT=1.04255;MQM=59.9853;MQMR=59.9928;NS=94;NUMALT=1;ODDS=0.34426;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193030;QR=58856;RO=1666;RPL=8;RPP=11763.8;RPPR=3594.67;RPR=5440;RUN=1;SAF=2774;SAP=6.99612;SAR=2674;SRF=781;SRP=17.1079;SRR=885;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1251:-112.894,-10.5361,0	0/1:89:49,40:49:1739:40:1420:-101.306,0,-130.002	1/1:80:1,79:1:36:79:2802:-248.82,-20.4841,0	1/1:76:0,76:0:0:76:2680:-241.445,-22.8783,0	1/1:51:1,50:1:36:50:1771:-156.074,-11.7543,0	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	0/1:87:45,42:45:1608:42:1461:-105.591,0,-118.82	1/1:89:1,88:1:36:88:3152:-280.307,-23.1934,0	1/1:55:0,55:0:0:55:1925:-173.525,-16.5567,0	1/1:55:0,55:0:0:55:1951:-175.865,-16.5567,0	1/1:131:1,130:1:36:130:4618:-412.188,-35.8367,0	1/1:139:0,139:0:0:139:4946:-445.292,-41.8432,0	0/1:139:79,59:79:2796:59:2112:-148.447,0,-209.978	1/1:152:0,152:0:0:152:5406:-486.666,-45.7566,0	0/1:117:61,56:61:2155:56:1965:-141.904,0,-158.997	1/1:113:0,113:0:0:113:3971:-357.582,-34.0164,0	1/1:121:1,120:1:36:120:4257:-379.711,-32.8264,0	0/1:100:55,45:55:1927:45:1603:-114.456,0,-143.601	0/1:112:52,60:52:1839:60:2111:-156.541,0,-132.074	0/1:97:52,45:52:1856:45:1594:-114.549,0,-138.12	0/1:92:44,48:44:1567:48:1690:-124.69,0,-113.626	0/1:42:32,10:32:1117:10:360:-20.101,0,-88.191	1/1:30:0,30:0:0:30:1047:-94.5392,-9.0309,0	1/1:88:4,84:4:144:84:2984:-255.48,-13.177,0	1/1:43:0,43:0:0:43:1531:-138.082,-12.9443,0	0/1:121:62,59:62:2219:59:2087:-151.673,0,-163.549	1/1:76:0,76:0:0:76:2657:-239.376,-22.8783,0	1/1:82:0,82:0:0:82:2923:-263.305,-24.6845,0	0/1:86:46,40:46:1640:40:1404:-100.766,0,-122	0/1:21:2,19:2:72:19:676:-54.8464,0,-0.515092	1/1:47:1,46:1:36:46:1644:-144.65,-10.5501,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	0/1:303:142,161:142:4974:161:5726:-424.247,0,-356.603	1/1:46:0,46:0:0:46:1617:-145.817,-13.8474,0	0/1:131:68,63:68:2418:63:2214:-160.09,0,-178.44	1/1:1:0,1:0:0:1:21:-2.09995,-0.30103,0	0/1:76:34,42:34:1216:42:1495:-111.966,0,-86.8683	1/1:95:0,95:0:0:95:3371:-303.606,-28.5979,0	1/1:51:0,51:0:0:51:1811:-163.271,-15.3525,0	1/1:173:1,172:1:36:172:6091:-544.697,-48.4799,0	1/1:107:0,106:0:0:106:3779:-339.95,-31.9092,0	1/1:44:0,44:0:0:44:1552:-139.969,-13.2453,0	1/1:75:0,75:0:0:75:2682:-241.625,-22.5773,0	0/1:54:30,24:30:1055:24:864:-61.8269,0,-79.0044	0/1:51:23,28:23:815:28:993:-74.3313,0,-58.3182	0/1:76:44,32:44:1536:32:1136:-79.6683,0,-115.648	0/1:80:39,41:39:1391:41:1452:-106.894,0,-101.406	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:78:0,78:0:0:78:2755:-248.194,-23.4803,0	1/1:14:0,14:0:0:14:487:-44.1592,-4.21442,0	1/1:4:0,4:0:0:4:125:-11.5586,-1.20412,0	1/1:61:0,61:0:0:61:2164:-195.027,-18.3628,0	1/1:31:0,31:0:0:31:1091:-98.4987,-9.33193,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:167:1,166:1:36:166:5890:-526.615,-46.6737,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:43:0,43:0:0:43:1539:-138.803,-12.9443,0	0/1:74:32,42:32:1131:42:1483:-111.488,0,-79.8215	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:72:2,70:2:72:70:2495:-217.966,-14.8374,0	1/1:37:1,36:1:36:36:1258:-109.923,-7.53984,0	1/1:57:0,57:0:0:57:2020:-182.07,-17.1587,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:166:0,166:0:0:166:5899:-531.023,-49.971,0	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	0/1:34:14,20:14:491:20:712:-54.1716,0,-34.2861	0/1:46:25,21:25:896:21:752:-54.1589,0,-67.113	0/1:97:46,51:46:1587:51:1800:-133.079,0,-113.916	1/1:56:0,56:0:0:56:1978:-178.293,-16.8577,0	0/1:56:30,26:30:1053:26:920:-66.2594,0,-78.2209	1/1:61:0,61:0:0:61:2143:-193.004,-18.3628,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:58:23,35:23:824:35:1248:-95.1651,0,-57.0236	0/1:68:28,40:28:999:40:1424:-107.987,0,-69.7545	0/1:99:45,54:45:1588:54:1912:-142.554,0,-113.406	0/1:142:75,67:75:2646:67:2358:-169.73,0,-195.641	0/1:126:68,58:68:2410:58:2055:-147.291,0,-179.226	1/1:158:0,158:0:0:158:5579:-502.237,-47.5627,0	0/1:196:91,105:91:3219:105:3707:-274.831,0,-230.93	0/1:59:41,18:41:1442:18:627:-38.9936,0,-112.311	1/1:119:0,119:0:0:119:4220:-379.982,-35.8226,0	1/1:115:0,114:0:0:114:4047:-364.058,-34.3174,0	1/1:103:0,103:0:0:103:3661:-329.694,-31.0061,0	0/1:158:80,78:80:2791:78:2770:-201.974,0,-203.861	0/1:131:85,45:85:2975:45:1574:-102.456,0,-228.491	1/1:50:1,49:1:36:49:1756:-154.726,-11.4532,0	1/1:212:1,211:1:36:211:7441:-666.145,-60.2201,0
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chr01	10253650	.	G	A	39959.8	PASS	AB=0.515598;ABP=12.6293;AC=34;AF=0.182796;AN=186;AO=2367;CIGAR=1X;DP=9656;DPB=9656;DPRA=1.58943;EPP=5142.89;EPPR=15636;GTI=5;LEN=1;MEANALT=1.09524;MQM=59.9666;MQMR=59.9578;NS=93;NUMALT=1;ODDS=0.547022;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84713;QR=260720;RO=7283;RPL=2367;RPP=5142.89;RPPR=15636;RPR=0;RUN=1;SAF=0;SAP=5142.89;SAR=2367;SRF=0;SRP=15817.8;SRR=7283;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:172:87,85:87:3120:85:3016:-219.893,0,-229.249	0/0:119:119,0:119:4263:0:0:0,-35.8226,-383.847	0/0:200:200,0:200:7144:0:0:0,-60.206,-643.017	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/1:178:94,84:94:3351:84:2986:-215.386,0,-248.138	0/0:168:168,0:168:6010:0:0:0,-50.573,-541.004	0/0:104:104,0:104:3710:0:0:0,-31.3071,-334.102	0/0:129:128,1:128:4570:1:36:0,-35.2346,-407.867	0/0:79:79,0:79:2831:0:0:0,-23.7814,-255.028	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/1:96:47,49:47:1684:49:1764:-130.145,0,-122.948	0/0:110:110,0:110:3939:0:0:0,-33.1133,-354.697	0/1:83:40,43:40:1440:43:1531:-113.097,0,-104.912	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:80:79,0:79:2826:0:0:0,-23.7814,-254.218	0/1:81:45,36:45:1598:36:1292:-92.2003,0,-119.725	0/1:87:42,45:42:1508:45:1620:-119.9,0,-109.825	0/1:243:109,134:109:3920:134:4804:-359.365,0,-279.839	0/1:139:54,85:54:1932:85:3029:-230.995,0,-132.313	0/1:66:27,39:27:968:39:1396:-106.071,0,-67.5694	0/0:67:67,0:67:2403:0:0:0,-20.169,-216.526	0/0:84:80,4:80:2872:4:144:0,-11.9729,-245.4	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:334:160,174:160:5714:174:6229:-460.16,0,-413.834	0/0:249:249,0:249:8903:0:0:0,-74.9565,-800.982	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.062	0/1:213:116,97:116:4152:97:3472:-248.572,0,-309.657	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/0:119:119,0:119:4255:0:0:0,-35.8226,-383.129	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:208:99,108:99:3547:108:3884:-287.227,0,-256.913	0/0:116:116,0:116:4111:0:0:0,-34.9195,-370.176	0/1:88:40,48:40:1431:48:1728:-129.315,0,-102.596	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:178:88,90:88:3139:90:3217:-236.139,0,-229.153	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.541	0/0:76:75,1:75:2684:1:36:0,-19.28,-238.207	0/0:139:139,0:139:4972:0:0:0,-41.8432,-447.629	0/1:140:73,67:73:2611:67:2378:-172.13,0,-193.093	0/1:116:41,74:41:1464:74:2656:-204.455,0,-97.2218	0/1:133:68,65:68:2440:65:2302:-167.402,0,-179.818	0/1:191:84,107:84:2995:107:3823:-286.77,0,-212.285	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:161:160,1:160:5734:1:36:0,-44.8676,-512.572	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:122:122,0:122:4371:0:0:0,-36.7257,-393.563	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	.:.:.:.:.:.:.:.	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.501	0/0:139:138,0:138:4934:0:0:0,-41.5421,-443.85	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:168:168,0:168:6020:0:0:0,-50.573,-541.904	0/1:214:114,100:114:4092:100:3584:-258.346,0,-304.044	0/0:106:106,0:106:3791:0:0:0,-31.9092,-341.258	0/0:106:106,0:106:3795:0:0:0,-31.9092,-341.747	0/0:148:140,8:140:5015:8:288:0,-18.285,-425.199	0/0:155:152,3:152:5464:3:108:0,-36.5845,-481.805	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:88:87,1:87:3112:1:36:0,-22.8924,-276.709	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:96:53,42:53:1896:42:1485:-104.985,0,-141.96	0/1:55:23,32:23:828:32:1144:-86.7129,0,-58.2875	0/1:195:97,97:97:3451:97:3480:-254.798,0,-252.191	0/0:178:178,0:178:6387:0:0:0,-53.5833,-574.667	0/1:116:50,66:50:1800:66:2350:-176.822,0,-127.363	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.013	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:135:64,71:64:2283:71:2556:-189.513,0,-165.092	0/1:116:53,63:53:1875:63:2264:-169.103,0,-134.109	0/1:313:167,146:167:5980:146:5240:-377.513,0,-444.084	0/1:110:48,62:48:1724:62:2224:-167.311,0,-122.332	0/1:86:42,44:42:1508:44:1584:-116.963,0,-110.126	0/0:116:116,0:116:4155:0:0:0,-34.9195,-374.132	0/1:147:73,74:73:2620:74:2647:-194.217,0,-190.607	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	0/0:87:87,0:87:3087:0:0:0,-26.1896,-278.056	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.501	0/0:77:77,0:77:2760:0:0:0,-23.1793,-247.477	0/1:104:59,45:59:2120:45:1608:-113.703,0,-159.761	0/1:65:12,53:12:432:53:1908:-152.431,0,-19.6542	0/0:81:80,1:80:2868:1:36:0,-20.7852,-254.759	0/0:141:141,0:141:5064:0:0:0,-42.4452,-455.903
chr01	10271851	.	A	T	174222	PASS	AB=0.486418;ABP=8.67309;AC=153;AF=0.81383;AN=188;AO=6417;CIGAR=1X;DP=8246;DPB=8246;DPRA=0;EPP=13920;EPPR=3961.61;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.7753;MQMR=59.9256;NS=94;NUMALT=1;ODDS=1.90507;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228518;QR=65353;RO=1827;RPL=3694;RPP=322.062;RPPR=146.122;RPR=2723;RUN=1;SAF=3692;SAP=319.439;SAR=2725;SRF=1086;SRP=144.477;SRR=741;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1668:-150.407,-14.1484,0	0/1:98:42,56:42:1495:56:1968:-147.88,0,-105.329	1/1:123:1,122:1:36:122:4354:-388.436,-33.4284,0	1/1:119:0,119:0:0:119:4241:-381.867,-35.8226,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:30:0,30:0:0:30:1071:-96.7016,-9.0309,0	0/1:75:45,30:45:1604:30:1076:-74.5756,0,-122.073	1/1:130:0,130:0:0:130:4617:-415.671,-39.1339,0	1/1:108:1,107:1:36:107:3825:-340.847,-28.913,0	1/1:73:0,73:0:0:73:2573:-231.808,-21.9752,0	1/1:151:0,151:0:0:151:5392:-485.373,-45.4555,0	1/1:161:0,161:0:0:161:5732:-515.998,-48.4658,0	0/1:126:71,55:71:2544:55:1968:-139.462,0,-191.281	1/1:159:0,159:0:0:159:5590:-503.197,-47.8638,0	0/1:121:59,62:59:2120:62:2192:-161.113,0,-154.637	1/1:111:0,111:0:0:111:3955:-356.118,-33.4143,0	1/1:152:0,152:0:0:152:5443:-489.976,-45.7566,0	0/1:105:65,40:65:2324:40:1440:-98.2732,0,-177.812	0/1:79:46,33:46:1648:33:1171:-81.8461,0,-124.827	0/1:86:37,49:37:1328:49:1732:-130.267,0,-93.9112	0/1:87:43,44:43:1535:44:1561:-114.504,0,-112.253	0/1:28:20,8:20:716:8:284:-17.4663,0,-56.3389	1/1:58:0,58:0:0:58:2084:-187.824,-17.4597,0	0/1:45:7,38:7:248:38:1360:-109.145,0,-9.11784	1/1:65:0,65:0:0:65:2332:-210.01,-19.567,0	0/1:162:77,85:77:2755:85:3033:-224.432,0,-199.424	1/1:162:0,162:0:0:162:5783:-520.527,-48.7669,0	1/1:62:0,62:0:0:62:2219:-199.974,-18.6639,0	0/1:101:53,48:53:1896:48:1728:-125.401,0,-140.514	1/1:59:2,57:2:72:57:2033:-176.403,-10.924,0	1/1:70:1,69:1:36:69:2471:-219.045,-17.4738,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:7:0,7:0:0:7:252:-23.0196,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:239:-21.7721,-2.10721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:286:137,149:137:4892:149:5286:-389.774,0,-354.179	1/1:79:0,78:0:0:78:2779:-250.021,-23.4803,0	0/1:123:53,70:53:1891:70:2486:-186.889,0,-133.44	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:95:51,44:51:1828:44:1571:-113.078,0,-136.203	1/1:60:0,60:0:0:60:2129:-191.864,-18.0618,0	1/1:123:0,123:0:0:123:4374:-393.746,-37.0267,0	1/1:122:0,122:0:0:122:4335:-390.323,-36.7257,0	1/1:100:0,100:0:0:100:3512:-316.282,-30.103,0	1/1:87:0,87:0:0:87:3119:-280.928,-26.1896,0	1/1:79:0,79:0:0:79:2817:-253.628,-23.7814,0	0/1:108:55,53:55:1964:53:1878:-136.782,0,-144.524	0/1:60:31,29:31:1116:29:1035:-75.4013,0,-82.6899	0/1:81:50,31:50:1791:31:1112:-76.0079,0,-137.088	0/1:73:52,21:52:1868:21:723:-43.4087,0,-146.424	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:96:0,96:0:0:96:3444:-310.148,-28.8989,0	1/1:52:0,52:0:0:52:1822:-164.232,-15.6536,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:87:0,87:0:0:87:3091:-278.399,-26.1896,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	1/1:71:1,70:1:36:70:2474:-218.444,-17.7749,0	1/1:218:4,214:4:144:214:7603:-670.954,-52.3109,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:57:1,56:1:36:56:2008:-177.387,-13.5604,0	0/1:122:52,70:52:1864:70:2484:-187.084,0,-131.314	1/1:55:0,55:0:0:55:1976:-178.11,-16.5567,0	1/1:56:0,56:0:0:56:1996:-179.905,-16.8577,0	1/1:107:0,107:0:0:107:3810:-343.088,-32.2102,0	1/1:68:0,68:0:0:68:2407:-216.884,-20.47,0	1/1:87:0,87:0:0:87:3087:-278.037,-26.1896,0	1/1:59:0,59:0:0:59:2097:-188.998,-17.7608,0	1/1:202:0,202:0:0:202:7171:-645.401,-60.8081,0	1/1:23:0,23:0:0:23:814:-73.5723,-6.92369,0	0/1:58:26,32:26:932:32:1143:-85.719,0,-66.7391	0/1:71:26,45:26:928:45:1616:-124.357,0,-62.4651	0/1:98:47,51:47:1683:51:1821:-134.657,0,-122.253	1/1:90:0,90:0:0:90:3240:-291.802,-27.0927,0	0/1:147:68,79:68:2440:79:2844:-211.933,0,-175.604	1/1:87:1,86:1:36:86:3053:-271.357,-22.5913,0	1/1:7:0,7:0:0:7:248:-22.6187,-2.10721,0	0/1:87:45,42:45:1616:42:1476:-106.942,0,-119.54	0/1:72:38,34:38:1364:34:1223:-88.6745,0,-101.387	0/1:125:55,69:55:1972:69:2461:-184.046,0,-140.067	0/1:123:64,59:64:2266:59:2112:-153.315,0,-167.175	0/1:125:73,52:73:2607:52:1862:-130.132,0,-197.166	1/1:117:0,117:0:0:117:4167:-375.087,-35.2205,0	0/1:215:113,102:113:4038:102:3634:-262.453,0,-298.88	0/1:40:22,18:22:764:18:640:-45.8881,0,-57.0356	1/1:79:0,79:0:0:79:2844:-256.197,-23.7814,0	1/1:108:0,108:0:0:108:3852:-346.842,-32.5112,0	1/1:102:1,101:1:36:101:3566:-316.679,-27.1068,0	0/1:193:105,88:105:3760:88:3131:-223.904,0,-280.367	0/1:100:75,25:75:2696:25:896:-50.8569,0,-212.781	1/1:64:0,64:0:0:64:2282:-205.638,-19.2659,0	1/1:193:0,193:0:0:193:6889:-620.066,-58.0988,0
chr01	10279587	.	T	C	206071	PASS	AB=0.471345;ABP=34.6201;AC=152;AF=0.808511;AN=188;AO=7676;CIGAR=1X;DP=10038;DPB=10038;DPRA=53.957;EPP=16671.2;EPPR=5125.51;GTI=6;LEN=1;MEANALT=1.03226;MQM=59.7837;MQMR=59.9695;NS=94;NUMALT=1;ODDS=0.861898;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=270732;QR=83920;RO=2359;RPL=3653;RPP=41.7381;RPPR=41.6945;RPR=4023;RUN=1;SAF=3653;SAP=41.7381;SAR=4023;SRF=1077;SRP=41.6945;SRR=1282;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,56:0:0:56:1958:-176.449,-16.8577,0	0/1:81:43,38:43:1536:38:1347:-96.7,0,-114.014	1/1:158:0,158:0:0:158:5606:-504.65,-47.5627,0	1/1:204:0,204:0:0:204:7186:-646.792,-61.4101,0	1/1:63:1,62:1:36:62:2195:-194.22,-15.3757,0	1/1:31:0,31:0:0:31:1084:-97.8272,-9.33193,0	0/1:120:70,50:70:2495:50:1780:-124.359,0,-188.679	1/1:152:0,152:0:0:152:5382:-484.486,-45.7566,0	1/1:117:0,117:0:0:117:4097:-368.832,-35.2205,0	1/1:128:0,127:0:0:127:4467:-401.938,-38.2308,0	1/1:89:0,89:0:0:89:3135:-282.366,-26.7917,0	1/1:79:0,79:0:0:79:2768:-249.35,-23.7814,0	0/1:101:49,52:49:1734:52:1842:-135.645,0,-125.939	1/1:83:0,83:0:0:83:2923:-263.289,-24.9855,0	0/1:109:57,52:57:2028:52:1836:-132.705,0,-149.98	1/1:76:2,74:2:72:74:2624:-229.561,-16.0416,0	1/1:84:0,84:0:0:84:2978:-268.242,-25.2865,0	0/1:76:41,35:41:1426:35:1248:-89.7466,0,-105.753	0/1:50:32,18:32:1152:18:636:-42.4887,0,-88.9386	0/1:162:91,71:91:3259:71:2514:-177.742,0,-244.763	0/1:162:85,77:85:2981:77:2725:-196.724,0,-219.755	0/1:118:85,33:85:3035:33:1176:-70.6262,0,-237.858	1/1:98:1,97:1:36:97:3379:-300.727,-25.9027,0	0/1:61:6,55:6:212:55:1911:-153.896,0,-1.06197	1/1:73:0,73:0:0:73:2548:-229.497,-21.9752,0	0/1:270:151,119:151:5365:119:4184:-295.428,0,-401.704	1/1:234:0,234:0:0:234:8303:-747.261,-70.441,0	1/1:55:0,55:0:0:55:1949:-175.679,-16.5567,0	0/1:340:174,166:174:6232:166:5854:-424.62,0,-458.58	1/1:125:0,125:0:0:125:4394:-395.629,-37.6288,0	1/1:92:0,92:0:0:92:3260:-293.621,-27.6948,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:242:117,125:117:4170:125:4373:-320.875,0,-302.634	1/1:105:0,105:0:0:105:3726:-335.389,-31.6082,0	0/1:85:47,38:47:1675:38:1345:-95.7443,0,-125.449	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:134:64,70:64:2259:70:2421:-177.788,0,-163.228	1/1:44:0,44:0:0:44:1548:-139.603,-13.2453,0	1/1:145:0,145:0:0:145:5151:-463.728,-43.6494,0	1/1:101:0,101:0:0:101:3595:-323.729,-30.404,0	1/1:90:0,90:0:0:90:3154:-284.072,-27.0927,0	1/1:109:1,108:1:36:108:3834:-341.656,-29.214,0	1/1:114:0,114:0:0:114:4033:-363.105,-34.3174,0	0/1:171:87,84:87:3098:84:2986:-217.494,0,-227.571	0/1:89:44,45:44:1580:45:1591:-116.656,0,-115.7	0/1:159:80,79:80:2872:79:2784:-202.927,0,-210.853	0/1:115:64,51:64:2261:51:1814:-128.92,0,-169.13	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:101:0,101:0:0:101:3591:-323.386,-30.404,0	1/1:63:0,63:0:0:63:2242:-202.042,-18.9649,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:141:0,141:0:0:141:4984:-448.707,-42.4452,0	1/1:30:0,30:0:0:30:1073:-96.8791,-9.0309,0	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	0/1:19:12,7:12:419:7:248:-16.9446,0,-32.3231	1/1:92:0,92:0:0:92:3254:-293.064,-27.6948,0	1/1:132:0,132:0:0:132:4576:-412.007,-39.736,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:300:0,300:0:0:300:10602:-954.025,-90.309,0	0/1:214:110,104:110:3925:104:3697:-268.503,0,-289.021	1/1:88:1,87:1:36:87:3073:-273.19,-22.8924,0	1/1:109:0,109:0:0:109:3761:-338.546,-32.8123,0	1/1:172:1,171:1:36:171:6003:-536.209,-48.1789,0	1/1:127:3,123:3:108:123:4325:-379.369,-28.1471,0	1/1:36:0,36:0:0:36:1253:-113.067,-10.8371,0	1/1:56:0,56:0:0:56:1987:-179.1,-16.8577,0	1/1:108:0,108:0:0:108:3823:-344.247,-32.5112,0	1/1:19:0,19:0:0:19:666:-60.2606,-5.71957,0	0/1:79:43,36:43:1526:36:1245:-88.5683,0,-113.85	0/1:154:84,70:84:2972:70:2479:-176.987,0,-221.354	0/1:139:80,58:80:2827:58:2028:-140.947,0,-212.914	1/1:224:0,224:0:0:224:7928:-713.509,-67.4307,0	0/1:107:60,47:60:2152:47:1659:-117.366,0,-161.736	1/1:269:4,265:4:144:265:9285:-822.149,-67.6635,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	0/1:134:68,66:68:2432:66:2344:-170.873,0,-178.798	0/1:175:75,100:75:2675:100:3558:-267.738,0,-188.315	0/1:202:119,83:119:4238:83:2935:-203.568,0,-320.792	0/1:94:51,43:51:1820:43:1493:-106.356,0,-135.784	0/1:80:48,32:48:1696:32:1117:-76.7483,0,-128.844	1/1:96:0,96:0:0:96:3366:-303.09,-28.8989,0	0/1:138:60,78:60:2114:78:2759:-207.007,0,-148.986	0/1:42:15,27:15:528:27:959:-73.974,0,-35.2081	1/1:87:1,86:1:36:86:3014:-267.858,-22.5913,0	1/1:103:0,103:0:0:103:3621:-326.079,-31.0061,0	1/1:44:0,44:0:0:44:1563:-140.949,-13.2453,0	0/1:117:72,45:72:2554:45:1577:-106.993,0,-194.89	0/1:93:58,35:58:2060:35:1225:-82.5559,0,-157.676	1/1:250:0,250:0:0:250:8899:-800.809,-75.2575,0	1/1:181:0,181:0:0:181:6354:-571.94,-54.4864,0
chr01	10794114	.	C	A	24815.4	PASS	AB=0.541847;ABP=45.1738;AC=35;AF=0.188172;AN=186;AO=1511;CIGAR=1X;DP=5691;DPB=5691;DPRA=1.58891;EPP=3284.11;EPPR=9071.08;GTI=5;LEN=1;MEANALT=1.05128;MQM=59.4441;MQMR=59.8379;NS=93;NUMALT=1;ODDS=0.653998;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53089;QR=149587;RO=4176;RPL=0;RPP=3284.11;RPPR=9071.08;RPR=1511;RUN=1;SAF=1511;SAP=3284.11;SAR=0;SRF=4176;SRP=9071.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.502	0/1:22:11,11:11:396:11:381:-27.9897,0,-29.3601	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.486	0/0:144:144,0:144:5180:0:0:0,-43.3483,-466.263	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4057	0/1:66:27,39:27:968:39:1365:-103.223,0,-67.2503	0/0:46:45,1:45:1620:1:36:0,-10.2491,-142.492	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.164	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.008	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.256	0/1:62:31,31:31:1112:31:1086:-79.3648,0,-81.7232	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:64:33,31:33:1173:31:1093:-79.4117,0,-86.6092	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.65	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6039	0/1:38:19,19:19:684:19:661:-48.3643,0,-50.4503	0/1:22:12,10:12:432:10:345:-24.7582,0,-32.5976	0/1:117:44,73:44:1584:73:2530:-192.679,0,-107.63	0/1:185:93,92:93:3336:92:3210:-233.384,0,-244.766	0/1:68:16,52:16:561:52:1819:-143.48,0,-30.3462	0/0:83:82,1:82:2928:1:32:0,-21.7862,-260.554	0/1:15:13,2:13:464:2:72:-2.32127,0,-37.5821	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:124:49,75:49:1756:75:2587:-195.661,0,-120.992	0/0:108:108,0:108:3865:0:0:0,-32.5112,-348.037	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:220:114,105:114:4084:105:3737:-270.299,0,-301.588	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.948	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.509	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:5:4,1:4:136:1:36:-2.09312,0,-11.0704	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7375	0/1:134:67,67:67:2412:67:2340:-170.48,0,-176.988	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.488	0/1:28:15,13:15:536:13:456:-32.9442,0,-40.1451	.:.:.:.:.:.:.:.	0/1:56:29,27:29:1044:27:972:-70.9402,0,-77.3722	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:128:128,0:128:4604:0:0:0,-38.5318,-414.489	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.03	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.012	0/0:77:76,0:76:2724:0:0:0,-22.8783,-245.04	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.351	0/1:123:40,83:40:1428:83:2865:-220.994,0,-91.7892	0/1:66:32,34:32:1152:34:1190:-87.5188,0,-84.076	0/1:54:20,34:20:712:34:1137:-86.3509,0,-48.151	0/1:84:40,44:40:1436:44:1571:-116.342,0,-104.248	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.254	0/0:37:37,0:37:1313:0:0:0,-11.1381,-117.363	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.739	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.137	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7425	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.837	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:151:151,0:151:5389:0:0:0,-45.4555,-485.139	0/1:151:76,75:76:2732:75:2692:-197.014,0,-200.596	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7453	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:112:107,5:107:3844:5:171:0,-18.0145,-329.924	0/0:28:26,2:26:932:2:72:0,-1.59212,-77.3609	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0487	0/0:34:34,0:34:1197:0:0:0,-10.235,-108.031	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5744	0/1:137:67,70:67:2392:70:2444:-178.927,0,-174.277	0/1:52:30,22:30:1080:22:792:-55.9521,0,-81.8588	0/1:110:51,59:51:1832:59:2097:-155.862,0,-132.003	0/0:155:155,0:155:5552:0:0:0,-46.6596,-499.801	0/1:25:8,17:8:288:17:563:-43.1338,0,-18.7417	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6954	0/1:87:41,46:41:1472:46:1633:-121.052,0,-106.587	0/1:112:50,62:50:1796:62:2194:-163.982,0,-128.2	0/1:198:82,116:82:2925:116:4130:-311.918,0,-203.878	0/1:60:34,26:34:1220:26:902:-63.4285,0,-92.0442	0/1:58:20,38:20:704:38:1323:-101.606,0,-46.2246	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.276	0/1:80:37,42:37:1328:42:1489:-110.148,0,-95.6811	0/1:15:8,7:8:284:7:252:-18.4874,0,-21.3879	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.602	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.486	0/0:15:14,0:14:500:0:0:0,-4.21442,-44.9765	0/1:68:31,37:31:1112:37:1317:-98.3598,0,-79.9213	0/1:53:17,36:17:608:36:1281:-99.6256,0,-39.0974	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.575	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.405
chr01	10794163	.	TCAC	TCAG,CCAG	119852	PASS	AB=0.454545,0.543264;ABP=52.1645,47.5409;AC=151,35;AF=0.811828,0.188172;AN=186;AO=4109,1496;CIGAR=3M1X,1X2M1X;DP=5619;DPB=5619.75;DPRA=0,1.60271;EPP=8882.21,3216.88;EPPR=7.35324;GTI=5;LEN=1,4;MEANALT=1.54839,2.15;MQM=59.8708,59.4606;MQMR=60;NS=93;NUMALT=2;ODDS=0.756888;PAIRED=0,0;PAIREDR=0;PAO=0,3;PQA=0,68;PQR=0;PRO=0;QA=146581,52358;QR=58;RO=2;RPL=4104,1492;RPP=8882.21,3216.88;RPPR=7.35324;RPR=5,4;RUN=1,1;SAF=4109,1496;SAP=8925.59,3251.53;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35,0:0:0:35,0:1256,0:-113.344,-10.5361,0,-113.344,-10.5361,-113.344	1/2:22:0,11,11:0:0:11,11:396,370:-62.6295,-30.3061,-26.9948,-32.6714,0,-29.3601	1/1:73:0,73,0:0:0:73,0:2599,0:-234.098,-21.9752,0,-234.098,-21.9752,-234.098	1/1:141:0,141,0:0:0:141,0:5010,0:-450.988,-42.4452,0,-450.988,-42.4452,-450.988	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:19:0,19,0:0:0:19,0:676,0:-61.1676,-5.71957,0,-61.1676,-5.71957,-61.1676	1/2:63:0,25,38:0:0:25,38:896,1319:-180.647,-107.566,-100.04,-73.4346,0,-61.9955	1/1:46:0,45,1:0:0:45,1:1612,36:-145.01,-13.5464,0,-142.073,-10.2491,-141.772	1/1:74:0,74,0:0:0:74,0:2639,0:-237.756,-22.2762,0,-237.756,-22.2762,-237.756	1/1:42:0,42,0:0:0:42,0:1493,0:-134.661,-12.6433,0,-134.661,-12.6433,-134.661	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3154,-8.42884,0,-90.3154,-8.42884,-90.3154	1/1:64:0,64,0:0:0:64,0:2292,0:-206.536,-19.2659,0,-206.536,-19.2659,-206.536	1/2:59:0,29,30:0:0:29,30:1035,1058:-170.863,-86.4892,-77.7593,-84.7289,0,-75.698	1/1:37:0,37,0:0:0:37,0:1332,0:-120.181,-11.1381,0,-120.181,-11.1381,-120.181	1/2:63:0,33,30:0:0:33,30:1175,1058:-182.269,-86.5008,-76.5668,-96.1226,0,-87.0917	1/1:43:0,43,0:0:0:43,0:1536,0:-138.528,-12.9443,0,-138.528,-12.9443,-138.528	1/1:22:0,22,0:0:0:22,0:788,0:-71.243,-6.62266,0,-71.243,-6.62266,-71.243	1/2:37:0,20,17:0:0:20,17:716,594:-106.884,-48.4808,-42.4602,-58.5683,0,-53.4507	1/2:22:1,11,10:1:36:11,10:396,352:-57.7248,-25.711,-25.3378,-29.3733,0,-29.3004	1/2:115:0,41,72:0:0:41,72:1460,2553:-326.954,-207.956,-195.614,-119.016,0,-97.3414	1/2:185:1,93,91:1:22:93,91:3324,3193:-529.005,-258.277,-231.959,-269.484,0,-243.767	1/2:69:0,16,53:0:0:16,53:572,1853:-197.718,-151.077,-146.261,-46.996,0,-31.0414	1/1:79:0,78,1:0:0:78,1:2792,36:-251.158,-23.4803,0,-248.221,-20.1831,-247.92	1/2:16:0,14,2:0:0:14,2:504,72:-47.3585,-6.23466,-2.02024,-41.4837,0,-40.8816	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/2:124:0,49,75:0:0:49,75:1752,2628:-356.986,-214.131,-199.381,-143.209,0,-120.632	1/1:108:0,108,0:0:0:108,0:3858,0:-347.415,-32.5112,0,-347.415,-32.5112,-347.415	1/1:21:0,21,0:0:0:21,0:743,0:-67.1933,-6.32163,0,-67.1933,-6.32163,-67.1933	1/2:219:0,114,104:0:0:114,104:4043,3652:-626.582,-297.217,-262.899,-329.447,0,-298.14	1/1:65:0,64,0:0:0:64,0:2283,0:-205.375,-19.2659,0,-205.375,-19.2659,-205.375	1/1:74:0,74,0:0:0:74,0:2627,0:-236.663,-22.2762,0,-236.663,-22.2762,-236.663	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:5:0,4,1:0:0:4,1:140,36:-14.6799,-3.29724,-2.09312,-11.7405,0,-11.4394	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:130:0,65,65:0:0:65,65:2319,2257:-372.836,-183.791,-164.224,-189.397,0,-169.83	1/1:39:0,39,0:0:0:39,0:1392,0:-125.534,-11.7402,0,-125.534,-11.7402,-125.534	1/2:27:0,14,13:0:0:14,13:500,451:-77.7769,-37.0068,-32.7924,-41.1218,0,-37.2084	.:.:.:.:.:.:.:.	1/2:55:0,28,27:0:0:28,27:1004,954:-159.921,-78.0478,-69.6189,-82.2285,0,-74.1007	1/1:27:0,27,0:0:0:27,0:960,0:-86.6465,-8.12781,0,-86.6465,-8.12781,-86.6465	1/1:128:0,127,0:0:0:127,0:4560,0:-410.2,-38.2308,0,-410.2,-38.2308,-410.2	1/1:31:0,31,0:0:0:31,0:1099,0:-99.2186,-9.33193,0,-99.2186,-9.33193,-99.2186	1/1:42:0,42,0:0:0:42,0:1499,0:-135.201,-12.6433,0,-135.201,-12.6433,-135.201	1/1:72:0,70,1:0:0:70,1:2500,30:-224.992,-21.0721,0,-222.595,-18.6288,-222.294	1/1:54:0,54,0:0:0:54,0:1940,0:-174.874,-16.2556,0,-174.874,-16.2556,-174.874	1/2:125:0,39,85:0:0:39,85:1382,2930:-350.486,-237.901,-226.16,-112.577,0,-86.9896	1/2:65:0,32,33:0:0:32,33:1148,1172:-189.423,-95.8294,-86.1965,-93.9506,0,-84.0166	1/2:49:0,19,30:0:0:19,30:684,1053:-141.853,-86.0386,-80.319,-56.1708,0,-47.1399	1/2:85:0,40,45:0:0:40,45:1428,1550:-242.614,-126.191,-114.15,-116.774,0,-103.228	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:65:0,65,0:0:0:65,0:2325,0:-209.503,-19.567,0,-209.503,-19.567,-209.503	1/1:37:0,37,0:0:0:37,0:1306,0:-117.84,-11.1381,0,-117.84,-11.1381,-117.84	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:133:0,131,0:0:0:131,0:4677,0:-420.705,-39.4349,0,-420.705,-39.4349,-420.705	1/1:36:0,36,0:0:0:36,0:1292,0:-116.565,-10.8371,0,-116.565,-10.8371,-116.565	1/1:10:0,10,0:0:0:10,0:360,0:-32.7425,-3.0103,0,-32.7425,-3.0103,-32.7425	1/2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chr01	10794225	.	C	A	111891	PASS	AB=0.439089;ABP=113.321;AC=153;AF=0.81383;AN=188;AO=5334;CIGAR=1X;DP=7285;DPB=7285;DPRA=0;EPP=11585.6;EPPR=4211.34;GTI=6;LEN=1;MEANALT=1.03191;MQM=59.985;MQMR=59.9943;NS=94;NUMALT=1;ODDS=0.384186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190810;QR=69160;RO=1946;RPL=0;RPP=11585.6;RPPR=4211.34;RPR=5334;RUN=1;SAF=0;SAP=11585.6;SAR=5334;SRF=0;SRP=4228.7;SRR=1946;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:1,21:1:36:21:744:-63.6861,-3.02439,0	0/1:58:35,23:35:1233:23:805:-55.3073,0,-93.8124	1/1:112:1,111:1:36:111:3975:-354.341,-30.1171,0	1/1:192:0,192:0:0:192:6846:-615.981,-57.7978,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:42:20,22:20:720:22:792:-58.9624,0,-52.4855	1/1:78:0,78:0:0:78:2780:-250.439,-23.4803,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:88:0,87:0:0:87:3114:-280.127,-26.1896,0	1/1:42:1,41:1:21:41:1466:-130.136,-10.5433,0	1/1:71:0,71:0:0:71:2531:-228.041,-21.3731,0	0/1:65:33,32:33:1180:32:1144:-83.7026,0,-86.9411	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:51:29,22:29:1036:22:792:-56.2531,0,-78.2014	1/1:55:0,55:0:0:55:1954:-176.134,-16.5567,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:25:8,17:8:284:17:612:-47.8877,0,-18.3776	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:195:107,88:107:3812:88:3147:-224.754,0,-284.576	0/1:163:105,58:105:3737:58:2066:-137.142,0,-287.463	0/1:74:51,23:51:1813:23:824:-52.2071,0,-141.173	1/1:110:3,107:3:108:107:3852:-336.785,-23.0381,0	1/1:59:4,55:4:144:55:1963:-163.631,-4.44715,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:209:132,77:132:4657:77:2760:-185.726,0,-356.377	1/1:137:0,137:0:0:137:4913:-442.318,-41.2411,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:284:151,133:151:5381:133:4773:-344.231,0,-398.93	1/1:132:1,131:1:36:131:4686:-418.3,-36.1377,0	1/1:111:0,108:0:0:108:3864:-347.593,-32.5112,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:130:58,72:58:2061:72:2579:-193.225,0,-146.626	1/1:90:0,90:0:0:90:3209:-289.032,-27.0927,0	0/1:33:20,13:20:716:13:468:-32.5257,0,-54.8337	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:155:89,66:89:3158:66:2335:-163.723,0,-237.784	1/1:24:1,23:1:36:23:819:-70.4333,-3.62645,0	1/1:74:0,74:0:0:74:2651:-238.835,-22.2762,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:55:0,55:0:0:55:1967:-177.301,-16.5567,0	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	0/1:177:97,80:97:3438:80:2857:-204.084,0,-256.352	0/1:101:44,57:44:1552:57:2031:-152.658,0,-109.565	0/1:99:59,40:59:2120:40:1432:-99.3751,0,-161.267	0/1:102:46,56:46:1656:56:1993:-148.937,0,-118.623	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:123:0,123:0:0:123:4396:-395.81,-37.0267,0	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	1/1:8:0,8:0:0:8:264:-24.0803,-2.40824,0	1/1:151:0,151:0:0:151:5414:-487.388,-45.4555,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:11:0,11:0:0:11:391:-35.5293,-3.31133,0	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:71:0,71:0:0:71:2539:-228.76,-21.3731,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:224:0,224:0:0:224:8025:-722.267,-67.4307,0	0/1:183:113,70:113:4002:70:2482:-168.545,0,-305.279	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:64:1,63:1:36:63:2252:-199.345,-15.6676,0	1/1:208:9,199:9:324:199:7114:-610.81,-33.1084,0	1/1:125:3,122:3:108:122:4372:-383.578,-27.5536,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:58:0,58:0:0:58:2079:-187.38,-17.4597,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:37:0,36:0:0:36:1296:-116.584,-10.8371,0	0/1:97:55,42:55:1964:42:1495:-105.644,0,-147.835	0/1:56:36,20:36:1284:20:720:-48.2711,0,-99.0057	0/1:141:83,58:83:2908:58:2070:-144.125,0,-219.506	1/1:137:0,137:0:0:137:4903:-441.417,-41.2411,0	0/1:43:15,28:15:536:28:1000:-77.3711,0,-35.6282	1/1:83:1,82:1:36:82:2948:-261.955,-21.3872,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:120:63,57:63:2246:57:2048:-148.468,0,-166.279	0/1:129:75,54:75:2662:54:1936:-135.684,0,-200.99	0/1:257:143,114:143:5079:114:4083:-290.29,0,-379.891	0/1:45:28,17:28:1004:17:612:-41.8671,0,-77.1295	0/1:58:32,26:32:1139:26:932:-66.7391,0,-85.3586	1/1:35:0,35:0:0:35:1245:-112.354,-10.5361,0	0/1:120:64,56:64:2283:56:1988:-143.068,0,-169.608	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	1/1:70:0,70:0:0:70:2499:-225.162,-21.0721,0	1/1:48:0,48:0:0:48:1719:-154.996,-14.4494,0	1/1:43:0,43:0:0:43:1525:-137.541,-12.9443,0	0/1:93:58,35:58:2076:35:1256:-85.3495,0,-159.115	0/1:51:39,12:39:1354:12:432:-23.8687,0,-106.802	1/1:99:0,99:0:0:99:3551:-319.797,-29.802,0	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0
chr01	10794233	.	A	G	32428	PASS	AB=0.559883;ABP=109.378;AC=35;AF=0.18617;AN=188;AO=1937;CIGAR=1X;DP=7248;DPB=7248;DPRA=1.6891;EPP=4209.15;EPPR=11507.5;GTI=6;LEN=1;MEANALT=1.08889;MQM=59.9928;MQMR=59.9894;NS=94;NUMALT=1;ODDS=0.385839;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68501;QR=189311;RO=5306;RPL=0;RPP=4209.15;RPPR=11507.5;RPR=1937;RUN=1;SAF=0;SAP=4209.15;SAR=1937;SRF=0;SRP=11524.8;SRR=5306;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:22,1:22:776:1:36:0,-3.32541,-66.5639	0/1:58:23,35:23:805:35:1234:-93.9029,0,-55.3078	0/0:112:111,1:111:3983:1:36:0,-30.1171,-355.06	0/0:193:193,0:193:6871:0:0:0,-58.0988,-618.423	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:44:22,22:22:783:22:779:-57.1867,0,-57.5476	0/0:76:75,1:75:2656:1:36:0,-19.28,-235.687	0/0:68:68,0:68:2401:0:0:0,-20.47,-216.346	0/0:87:87,0:87:3089:0:0:0,-26.1896,-278.235	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/0:68:68,0:68:2398:0:0:0,-20.47,-216.077	0/1:66:31,35:31:1093:35:1225:-90.6837,0,-78.8097	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.225	0/1:53:22,31:22:784:31:1084:-81.9115,0,-54.9293	0/0:54:54,0:54:1913:0:0:0,-16.2556,-172.445	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:25:17,8:17:604:8:272:-17.2854,0,-47.1649	0/1:21:12,9:12:428:9:309:-21.8191,0,-32.5372	0/1:194:88,106:88:3128:106:3755:-279.75,0,-223.345	0/1:166:58,108:58:2070:108:3800:-292.228,0,-136.598	0/1:73:22,51:22:792:51:1741:-134.991,0,-49.6305	0/0:110:106,3:106:3784:3:104:0,-23.3835,-331.08	0/0:58:54,4:54:1927:4:144:0,-4.14612,-160.392	0/0:42:42,0:42:1488:0:0:0,-12.6433,-134.212	0/1:205:76,128:76:2728:128:4563:-349.157,0,-184.081	0/0:132:132,0:132:4702:0:0:0,-39.736,-423.339	0/0:30:30,0:30:1058:0:0:0,-9.0309,-95.5296	0/1:276:129,147:129:4615:147:5235:-388.205,0,-332.429	0/0:131:130,1:130:4618:1:36:0,-35.8367,-412.181	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.792	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:133:73,60:73:2607:60:2126:-151.57,0,-194.841	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/1:34:16,18:16:576:18:625:-46.3375,0,-41.94	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:156:65,91:65:2319:91:3204:-241.621,0,-161.782	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.116	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.271	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:172:76,96:76:2708:96:3421:-256.326,0,-192.185	0/1:102:57,45:57:1996:45:1596:-113.223,0,-149.204	0/1:99:40,59:40:1436:59:2094:-158.927,0,-99.7357	0/1:102:55,47:55:1962:47:1684:-121.142,0,-146.149	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/0:49:49,0:49:1738:0:0:0,-14.7505,-156.703	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:150:150,0:150:5384:0:0:0,-45.1545,-484.69	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:16:10,6:10:356:6:212:-14.6083,0,-27.5648	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:70:69,0:69:2415:0:0:0,-20.7711,-217.285	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:220:220,0:220:7858:0:0:0,-66.2266,-707.246	0/1:178:68,110:68:2436:110:3919:-299.321,0,-165.912	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:205:196,9:196:7015:9:324:0,-32.2053,-601.906	0/0:124:120,3:120:4299:3:108:0,-27.199,-377.047	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:94:42,52:42:1504:52:1852:-138.662,0,-107.358	0/1:59:22,37:22:792:37:1311:-100.53,0,-53.8449	0/1:142:59,83:59:2092:83:2932:-221.367,0,-145.801	0/0:138:138,0:138:4940:0:0:0,-41.5421,-444.748	0/1:39:26,13:26:916:13:460:-29.9943,0,-71.0163	0/0:82:81,1:81:2912:1:36:0,-21.0862,-258.716	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:121:58,63:58:2080:63:2223:-163.907,0,-151.046	0/1:131:55,76:55:1945:76:2697:-203.539,0,-135.889	0/1:257:115,142:115:4065:142:5045:-376.831,0,-288.673	0/1:48:20,28:20:712:28:983:-74.3331,0,-49.9572	0/1:57:25,32:25:900:32:1113:-83.3164,0,-64.1623	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:119:55,64:55:1950:64:2265:-168.289,0,-139.952	0/1:20:9,11:9:320:11:379:-28.42,0,-23.1218	0/0:71:70,1:70:2508:1:36:0,-17.7749,-222.374	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/1:94:36,57:36:1292:57:1991:-151.106,0,-88.2282	0/1:51:15,36:15:536:36:1260:-98.3486,0,-33.2223	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:82:82,0:82:2926:0:0:0,-24.6845,-263.574
chr01	10800748	.	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chr01	10817732	.	T	C	95875.9	PASS	AB=0.513448;ABP=6.92348;AC=153;AF=0.81383;AN=188;AO=4451;CIGAR=1X;DP=5676;DPB=5676;DPRA=61.0215;EPP=9529.76;EPPR=2598.27;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.9483;MQMR=59.9877;NS=94;NUMALT=1;ODDS=0.891619;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159220;QR=43879;RO=1223;RPL=16;RPP=9529.76;RPPR=2598.27;RPR=4435;RUN=1;SAF=4451;SAP=9668.23;SAR=0;SRF=1223;SRP=2658.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:91:37,54:37:1328:54:1928:-146.402,0,-92.4285	1/1:78:0,78:0:0:78:2795:-251.789,-23.4803,0	1/1:169:0,168:0:0:168:5994:-538.995,-50.573,0	1/1:57:0,57:0:0:57:2022:-182.249,-17.1587,0	1/1:35:0,34:0:0:34:1220:-109.747,-10.235,0	0/1:62:31,31:31:1116:31:1105:-81.0957,0,-82.0878	1/1:111:0,111:0:0:111:3976:-357.973,-33.4143,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:47:20,27:20:720:27:972:-73.6495,0,-50.9804	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	0/1:42:21,21:21:752:21:752:-55.363,0,-55.363	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:31:10,21:10:360:21:754:-58.8467,0,-23.4124	0/1:15:5,10:5:176:10:360:-28.2289,0,-11.6696	0/1:95:51,44:51:1817:44:1576:-113.534,0,-135.212	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/1:55:38,17:38:1368:17:612:-38.8568,0,-106.864	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:65:4,61:4:144:61:2180:-183.153,-6.25333,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:234:102,132:102:3664:132:4732:-355.597,0,-259.522	1/1:134:2,132:2:72:132:4700:-416.324,-33.5013,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:147:70,77:70:2516:77:2772:-205.469,0,-182.44	1/1:95:0,95:0:0:95:3412:-307.281,-28.5979,0	1/1:46:0,46:0:0:46:1637:-147.614,-13.8474,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:114:34,80:34:1220:80:2867:-223.949,0,-75.7894	1/1:182:0,182:0:0:182:6518:-586.702,-54.7875,0	0/1:34:14,20:14:504:20:720:-54.8938,0,-35.4631	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:105:66,39:66:2372:39:1386:-93.4289,0,-182.13	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:76:0,76:0:0:76:2717:-244.771,-22.8783,0	1/1:36:0,36:0:0:36:1296:-116.942,-10.8371,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:105:0,105:0:0:105:3755:-338.15,-31.6082,0	0/1:166:78,88:78:2800:88:3138:-232.672,0,-202.268	0/1:26:16,10:16:576:10:360:-24.9175,0,-44.3482	0/1:76:21,55:21:748:55:1980:-155.596,0,-44.767	0/1:78:45,33:45:1607:33:1176:-82.6674,0,-121.439	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:130:1,129:1:36:129:4619:-412.275,-35.5356,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:103:0,103:0:0:103:3658:-329.153,-31.0061,0	1/1:23:0,23:0:0:23:806:-72.8578,-6.92369,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:23:8,15:8:288:15:531:-41.1982,0,-19.3437	1/1:28:0,28:0:0:28:999:-90.2245,-8.42884,0	1/1:127:0,127:0:0:127:4560:-410.565,-38.2308,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:101:0,101:0:0:101:3594:-323.632,-30.404,0	0/1:133:72,61:72:2580:61:2192:-157.508,0,-192.384	1/1:59:0,59:0:0:59:2107:-189.894,-17.7608,0	1/1:68:0,68:0:0:68:2424:-218.416,-20.47,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:109:0,109:0:0:109:3911:-352.18,-32.8123,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:102:64,38:64:2296:38:1364:-92.3557,0,-176.196	0/1:37:17,20:17:612:20:708:-52.9075,0,-44.2753	0/1:60:29,31:29:1040:31:1112:-82.3295,0,-75.8526	1/1:133:0,133:0:0:133:4742:-426.932,-40.037,0	0/1:75:40,35:40:1432:35:1244:-89.6866,0,-106.6	1/1:93:2,91:2:72:91:3272:-287.862,-21.1591,0	1/1:9:0,9:0:0:9:320:-29.139,-2.70927,0	0/1:127:75,52:75:2700:52:1864:-129.809,0,-205.013	0/1:84:43,41:43:1544:41:1468:-107.13,0,-113.967	0/1:100:56,44:56:2008:44:1556:-110.088,0,-150.89	0/1:82:45,37:45:1616:37:1332:-95.4979,0,-121.046	0/1:35:13,22:13:460:22:792:-61.0696,0,-31.1993	1/1:43:0,43:0:0:43:1524:-137.45,-12.9443,0	0/1:72:28,44:28:1008:44:1559:-118.881,0,-69.3622	0/1:37:14,23:14:495:23:828:-63.706,0,-33.7449	1/1:47:0,47:0:0:47:1692:-152.559,-14.1484,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:48:19,29:19:684:29:1031:-78.6532,0,-47.4409	0/1:30:18,12:18:644:12:424:-29.4655,0,-49.2597	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	1/1:59:1,58:1:36:58:2076:-183.512,-14.1625,0
chr01	11008647	.	T	A	21159.8	PASS	AB=0.486287;ABP=8.5488;AC=36;AF=0.191489;AN=188;AO=1654;CIGAR=1X;DP=7622;DPB=7622;DPRA=1.36135;EPP=3594.63;EPPR=12962.4;GTI=3;LEN=1;MEANALT=1;MQM=33.8156;MQMR=22.8842;NS=94;NUMALT=1;ODDS=0.906515;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59076;QR=213794;RO=5968;RPL=0;RPP=3594.63;RPPR=12962.4;RPR=1654;RUN=1;SAF=1654;SAP=3594.63;SAR=0;SRF=5968;SRP=12962.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:360:0:0:0,-3.0103,-20.7377	0/1:127:78,49:78:2791:49:1760:-103.764,0,-121.72	0/0:101:101,0:101:3615:0:0:0,-30.404,-209.41	0/0:110:110,0:110:3952:0:0:0,-33.1133,-225.781	0/0:32:32,0:32:1148:0:0:0,-9.63296,-65.6584	0/0:56:56,0:56:2008:0:0:0,-16.8577,-114.682	0/1:111:51,60:51:1828:60:2129:-136.536,0,-71.3592	0/0:168:168,0:168:6003:0:0:0,-50.573,-343.753	0/0:76:76,0:76:2728:0:0:0,-22.8783,-156.127	0/0:138:138,0:138:4928:0:0:0,-41.5421,-282.777	0/0:58:58,0:58:2069:0:0:0,-17.4597,-118.806	0/0:71:71,0:71:2552:0:0:0,-21.3731,-145.906	0/1:84:42,42:42:1503:42:1508:-95.105,0,-61.0562	0/0:67:67,0:67:2396:0:0:0,-20.169,-137.535	0/1:71:34,37:34:1224:37:1324:-84.6124,0,-48.6735	0/0:63:63,0:63:2264:0:0:0,-18.9649,-129.412	0/0:111:111,0:111:3992:0:0:0,-33.4143,-227.773	0/1:58:33,25:33:1184:25:892:-53.1013,0,-50.4233	0/1:35:25,10:25:896:10:360:-18.6915,0,-40.5914	0/1:144:83,61:83:2988:61:2196:-128.54,0,-127.111	0/1:160:81,79:81:2908:79:2828:-180.978,0,-117.965	0/1:60:18,42:18:648:42:1496:-100.263,0,-17.5236	0/0:70:70,0:70:2493:0:0:0,-21.0721,-144.183	0/0:47:46,1:46:1652:1:36:0,-10.9023,-91.2132	0/0:47:47,0:47:1676:0:0:0,-14.1484,-96.5152	0/1:261:118,143:118:4207:143:5090:-324.793,0,-154.59	0/0:235:235,0:235:8423:0:0:0,-70.742,-481.561	0/0:47:47,0:47:1692:0:0:0,-14.1484,-96.4504	0/1:211:136,75:136:4888:75:2680:-147.612,0,-204.996	0/0:122:122,0:122:4357:0:0:0,-36.7257,-249.96	0/0:84:84,0:84:2992:0:0:0,-25.2865,-171.993	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.27887	0/0:9:9,0:9:320:0:0:0,-2.70927,-18.6593	0/1:5:1,4:1:32:4:140:-10.2998,0,-0.743597	0/0:3:3,0:3:104:0:0:0,-0.90309,-6.35271	0/0:5:5,0:5:180:0:0:0,-1.50515,-10.4828	0/1:211:102,109:102:3647:109:3889:-243.806,0,-138.798	0/0:95:95,0:95:3391:0:0:0,-28.5978,-194.477	0/1:76:47,29:47:1684:29:1032:-60.7025,0,-73.6913	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	0/1:147:94,53:94:3372:53:1877:-107.685,0,-148.514	0/0:35:35,0:35:1260:0:0:0,-10.536,-72.0121	0/0:99:99,0:99:3538:0:0:0,-29.802,-202.824	0/0:84:84,0:84:3003:0:0:0,-25.2865,-172.144	0/0:93:93,0:93:3314:0:0:0,-27.9958,-190.637	0/0:83:83,0:83:2963:0:0:0,-24.9855,-164.044	0/0:57:57,0:57:2040:0:0:0,-17.1587,-117.052	0/1:78:22,56:22:792:56:2001:-134.961,0,-21.8691	0/1:102:57,45:57:2052:45:1616:-97.7122,0,-86.2552	0/1:117:58,59:58:2076:59:2100:-133.417,0,-84.3756	0/1:71:38,33:38:1368:33:1165:-71.3975,0,-53.94	0/0:12:12,0:12:432:0:0:0,-3.61236,-24.8396	0/0:86:86,0:86:3072:0:0:0,-25.8886,-176.267	0/0:27:27,0:27:972:0:0:0,-8.12781,-53.2689	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.27887	0/0:76:76,0:76:2728:0:0:0,-22.8783,-156.048	0/0:35:35,0:35:1256:0:0:0,-10.536,-71.985	0/0:2:2,0:2:72:0:0:0,-0.60206,-4.14799	0/1:14:3,11:3:104:11:392:-27.292,0,-1.87573	0/0:52:52,0:52:1843:0:0:0,-15.6536,-106.458	0/0:119:119,0:119:4268:0:0:0,-35.8226,-244.186	0/0:6:6,0:6:212:0:0:0,-1.80618,-12.5062	0/0:174:174,0:174:6231:0:0:0,-52.3792,-343.24	0/1:144:89,55:89:3196:55:1968:-111.1,0,-139.103	0/0:67:67,0:67:2412:0:0:0,-20.169,-137.643	0/0:56:56,0:56:1999:0:0:0,-16.8577,-114.917	0/0:147:147,0:147:5264:0:0:0,-44.2514,-301.359	0/0:57:57,0:57:2044:0:0:0,-17.1587,-116.906	0/0:17:17,0:17:608:0:0:0,-5.11751,-35.0672	0/0:86:85,1:85:3035:1:36:0,-22.6424,-170.834	0/0:99:99,0:99:3560:0:0:0,-29.802,-196.138	0/0:35:35,0:35:1256:0:0:0,-10.536,-71.985	0/1:72:30,42:30:1076:42:1500:-97.2893,0,-40.0559	0/1:73:39,34:39:1404:34:1201:-72.1525,0,-58.3263	0/1:145:77,68:77:2768:68:2432:-150.511,0,-114.391	0/0:153:153,0:153:5480:0:0:0,-46.0576,-314.483	0/1:40:14,26:14:504:26:932:-62.1678,0,-16.9004	0/0:135:133,2:133:4775:2:72:0,-35.3903,-267.533	0/0:9:9,0:9:320:0:0:0,-2.70927,-18.7391	0/1:76:39,37:39:1391:37:1324:-84.6023,0,-57.1989	0/1:58:30,28:30:1076:28:1008:-61.2575,0,-44.2703	0/1:134:84,50:84:2996:50:1780:-100.063,0,-131.509	0/1:107:49,58:49:1764:58:2088:-132.712,0,-68.5156	0/1:61:22,39:22:788:39:1400:-93.6466,0,-26.9593	0/0:89:89,0:89:3188:0:0:0,-26.7917,-182.483	0/1:131:55,76:55:1972:76:2712:-176.076,0,-73.5425	0/1:36:18,18:18:648:18:644:-41.8738,0,-26.3084	0/0:58:58,0:58:2088:0:0:0,-17.4597,-119.27	0/0:70:70,0:70:2508:0:0:0,-21.0721,-144.053	0/0:18:18,0:18:648:0:0:0,-5.41854,-37.1455	0/1:86:45,41:45:1616:41:1468:-92.6349,0,-66.6062	0/1:85:30,55:30:1072:55:1964:-129.059,0,-36.1153	0/0:126:126,0:126:4528:0:0:0,-37.9298,-258.077	0/0:141:141,0:141:5047:0:0:0,-42.4452,-288.996
chr01	11103603	.	TG	TA,CA	105799	PASS	AB=0.465091,0.53276;ABP=22.7192,20.3681;AC=152,36;AF=0.808511,0.191489;AN=188;AO=2882,996;CIGAR=1M1X,2X;DP=3886;DPB=3886.5;DPRA=20.8817,1.54054;EPP=53.9442,152.667;EPPR=5.18177;GTI=5;LEN=1,2;MEANALT=1.45161,2.08108;MQM=59.9938,59.6195;MQMR=60;NS=94;NUMALT=2;ODDS=1.72734;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=102653,35273;QR=36;RO=1;RPL=1571,367;RPP=53.9442,152.667;RPPR=5.18177;RPR=1311,629;RUN=1,1;SAF=2882,996;SAP=6261.19,2165.8;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54,0:0:0:54,0:1901,0:-171.366,-16.2556,0,-171.366,-16.2556,-171.366	1/2:26:0,9,17:0:0:9,17:309,585:-72.9361,-47.8481,-45.1389,-25.4314,0,-20.3139	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/1:37:0,37,0:0:0:37,0:1309,0:-118.11,-11.1381,0,-118.11,-11.1381,-118.11	1/1:23:0,23,0:0:0:23,0:793,0:-71.6851,-6.92369,0,-71.6851,-6.92369,-71.6851	1/1:16:0,16,0:0:0:16,0:571,0:-51.7229,-4.81648,0,-51.7229,-4.81648,-51.7229	1/2:29:0,16,13:0:0:16,13:572,466:-85.0044,-38.3653,-33.5488,-46.9969,0,-43.0836	1/1:52:0,52,0:0:0:52,0:1844,0:-166.24,-15.6536,0,-166.24,-15.6536,-166.24	1/1:56:0,56,0:0:0:56,0:2000,0:-180.274,-16.8577,0,-180.274,-16.8577,-180.274	1/1:42:0,42,0:0:0:42,0:1500,0:-135.295,-12.6433,0,-135.295,-12.6433,-135.295	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:52:0,52,0:0:0:52,0:1864,0:-168.039,-15.6536,0,-168.039,-15.6536,-168.039	1/2:47:0,20,26:0:0:20,26:705,936:-133.769,-76.3729,-70.3523,-57.3925,0,-49.5657	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:33:0,15,18:0:0:15,18:532,630:-94.9483,-51.6031,-47.0876,-43.6976,0,-38.2791	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:20:0,10,10:0:0:10,10:360,360:-59.1082,-29.734,-26.7237,-29.734,0,-26.7237	1/2:15:0,10,5:0:0:10,5:360,178:-44.2403,-14.8635,-11.8532,-29.734,0,-28.2289	1/2:87:0,41,46:0:0:41,46:1453,1624:-250.932,-132.569,-120.226,-118.717,0,-104.87	1/2:67:0,22,45:0:0:22,45:765,1590:-192.033,-129.838,-123.215,-62.5451,0,-48.9987	1/2:49:0,19,30:0:0:19,30:661,1056:-140.059,-86.3162,-80.5967,-54.092,0,-45.0611	1/1:46:0,46,0:0:0:46,0:1648,0:-148.609,-13.8474,0,-148.609,-13.8474,-148.609	1/2:63:0,49,14:0:0:49,14:1741,493:-182.356,-40.4872,-25.7367,-142.222,0,-138.008	1/1:69:0,69,0:0:0:69,0:2455,0:-221.205,-20.7711,0,-221.205,-20.7711,-221.205	1/2:133:0,57,76:0:0:57,76:2040,2704:-387.079,-220.722,-203.564,-166.713,0,-143.835	1/1:116:0,116,0:0:0:116,0:4098,0:-369.007,-34.9195,0,-369.007,-34.9195,-369.007	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/2:100:0,40,60:0:0:40,60:1428,2140:-291.134,-174.714,-162.673,-116.776,0,-98.7145	1/1:51:0,51,0:0:0:51,0:1813,0:-163.45,-15.3525,0,-163.45,-15.3525,-163.45	1/1:50:0,50,0:0:0:50,0:1780,0:-160.483,-15.0515,0,-160.483,-15.0515,-160.483	1/1:13:0,13,0:0:0:13,0:460,0:-41.7354,-3.91339,0,-41.7354,-3.91339,-41.7354	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:115:0,53,62:0:0:53,62:1904,2185:-333.406,-178.079,-162.124,-155.683,0,-137.019	1/1:72:0,72,0:0:0:72,0:2549,0:-229.66,-21.6742,0,-229.66,-21.6742,-229.66	1/2:12:0,6,6:0:0:6,6:216,216:-35.6006,-17.976,-16.1699,-17.9843,0,-16.1782	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:38:0,15,23:0:0:15,23:540,778:-107.475,-63.4056,-58.8901,-44.4211,0,-37.4974	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:81:0,81,0:0:0:81,0:2881,0:-259.525,-24.3834,0,-259.525,-24.3834,-259.525	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:21:1,20,0:1:36:20,0:712,0:-60.8084,-2.72336,0,-61.1094,-6.0206,-64.047	1/1:59:0,59,0:0:0:59,0:2104,0:-189.63,-17.7608,0,-189.63,-17.7608,-189.63	1/1:42:0,42,0:0:0:42,0:1504,0:-135.655,-12.6433,0,-135.655,-12.6433,-135.655	1/2:66:0,32,34:0:0:32,34:1144,1215:-192.688,-99.4088,-89.7758,-93.6366,0,-83.4015	1/2:77:0,41,36:0:0:41,36:1460,1291:-224.651,-105.654,-93.3118,-119.354,0,-108.517	1/2:50:0,22,28:0:0:22,28:792,996:-146.113,-81.4875,-74.8649,-64.983,0,-56.5542	1/2:46:0,16,28:0:0:16,28:564,1008:-128.108,-82.1888,-77.3723,-45.9148,0,-37.486	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:31:0,30,0:0:0:30,0:1068,0:-96.0724,-9.0309,0,-96.0724,-9.0309,-96.0724	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:61:0,59,1:0:0:59,1:2095,36:-188.513,-17.7608,0,-185.575,-14.7684,-185.274	1/1:18:0,17,1:0:0:17,1:608,34:-54.7112,-5.11751,0,-51.9541,-2.01963,-51.6531	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	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chr01	11103612	.	TTA	TTT	16199.9	PASS	AB=0.522138;ABP=10.8942;AC=36;AF=0.191489;AN=188;AO=970;CIGAR=2M1X;DP=3901;DPB=3901;DPRA=1.48645;EPP=2109.34;EPPR=6324.17;GTI=5;LEN=1;MEANALT=1.13889;MQM=59.6495;MQMR=59.9918;NS=94;NUMALT=1;ODDS=1.64177;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34619;QR=102210;RO=2915;RPL=970;RPP=2109.34;RPPR=6324.17;RPR=0;RUN=1;SAF=970;SAP=2109.34;SAR=0;SRF=2915;SRP=6332.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:53,0:53:1853:0:0:0,-15.9546,-166.727	0/1:25:9,16:9:307:16:567:-43.8289,0,-20.4333	0/0:47:47,0:47:1658:0:0:0,-14.1484,-149.506	0/0:36:36,0:36:1261:0:0:0,-10.8371,-113.791	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1224	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.819	0/1:31:18,13:18:619:13:468:-33.1277,0,-46.699	0/0:54:54,0:54:1871:0:0:0,-16.2556,-168.665	0/0:58:58,0:58:2018:0:0:0,-17.4597,-181.889	0/0:42:42,0:42:1478:0:0:0,-12.6433,-133.312	0/0:20:20,0:20:694:0:0:0,-6.0206,-62.7794	0/0:53:53,0:53:1871:0:0:0,-15.9546,-168.669	0/1:47:23,24:23:798:24:860:-63.5734,0,-57.9868	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8136	0/1:33:16,17:16:563:17:612:-45.4771,0,-41.0655	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0065	0/0:15:15,0:15:530:0:0:0,-4.51545,-48.0318	0/1:20:10,10:10:343:10:360:-26.7237,0,-25.1788	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5022	0/1:87:41,46:41:1412:46:1633:-120.976,0,-101.177	0/1:67:23,44:23:826:44:1576:-121.958,0,-54.4948	0/1:48:20,27:20:710:27:968:-72.9211,0,-49.7186	0/0:47:47,0:47:1629:0:0:0,-14.1484,-146.895	0/1:63:50,13:50:1740:13:468:-23.4948,0,-137.914	0/0:71:71,0:71:2477:0:0:0,-21.3731,-223.182	0/1:131:57,74:57:1997:74:2633:-197.778,0,-140.567	0/0:117:117,0:117:4111:0:0:0,-35.2205,-370.179	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:99:39,59:39:1380:59:2123:-161.353,0,-94.7448	0/0:51:51,0:51:1805:0:0:0,-15.3525,-162.73	0/0:49:49,0:49:1762:0:0:0,-14.7505,-158.864	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4986	0/0:1:1,0:1:31:0:0:0,-0.30103,-3.09945	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:12:12,0:12:430:0:0:0,-3.61236,-39.0401	0/1:113:53,60:53:1869:60:2137:-158.34,0,-134.471	0/0:73:73,0:73:2565:0:0:0,-21.9752,-231.098	0/1:11:6,5:6:205:5:176:-12.8654,0,-15.473	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:37:15,22:15:531:22:776:-59.024,0,-36.9847	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5938	0/0:82:82,0:82:2869:0:0:0,-24.6845,-258.446	0/0:16:16,0:16:565:0:0:0,-4.81648,-51.1812	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9238	0/0:60:60,0:60:2116:0:0:0,-18.0618,-190.708	0/0:43:43,0:43:1465:0:0:0,-12.9443,-132.137	0/1:63:26,31:26:900:31:1101:-81.8722,0,-63.8021	0/1:76:41,35:41:1435:35:1247:-89.6534,0,-106.565	0/1:51:23,28:23:799:28:1000:-74.9247,0,-56.8735	0/1:47:17,26:17:606:26:936:-71.2568,0,-41.5695	0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1749	0/0:33:33,0:33:1161:0:0:0,-9.93399,-104.794	0/0:13:13,0:13:436:0:0:0,-3.91339,-39.5609	0/0:8:8,0:8:282:0:0:0,-2.40824,-25.7216	0/0:62:62,0:62:2120:0:0:0,-18.6639,-191.065	0/0:18:17,1:17:590:1:36:0,-1.82026,-49.8263	0/0:11:11,0:11:386:0:0:0,-3.31133,-35.0761	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:48:48,0:48:1674:0:0:0,-14.4494,-150.945	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.13	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:53:53,0:53:1849:0:0:0,-15.9546,-166.687	0/1:93:38,55:38:1331:55:1972:-149.754,0,-92.0912	0/0:18:18,0:18:611:0:0:0,-5.41854,-55.3067	0/0:34:34,0:34:1192:0:0:0,-10.235,-107.584	0/0:62:62,0:62:2131:0:0:0,-18.6639,-192.05	0/0:80:80,0:80:2799:0:0:0,-24.0824,-252.151	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.0781	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:24:24,0:24:842:0:0:0,-7.22472,-76.0976	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3815	0/1:58:27,31:27:948:31:1107:-82.4757,0,-68.1736	0/1:66:36,30:36:1227:30:1072:-76.9245,0,-90.858	0/1:88:49,39:49:1705:39:1371:-97.1754,0,-127.24	0/0:40:40,0:40:1418:0:0:0,-12.0412,-127.916	0/1:44:17,27:17:599:27:964:-73.6248,0,-40.9931	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.715	0/0:20:20,0:20:718:0:0:0,-6.0206,-64.9484	0/1:41:17,24:17:575:24:855:-64.9279,0,-39.7254	0/1:65:27,38:27:950:38:1355:-102.624,0,-66.2468	0/1:118:55,63:55:1955:63:2264:-168.491,0,-140.704	0/1:41:26,15:26:922:15:540:-36.592,0,-70.9554	0/1:24:14,10:14:504:10:360:-25.5172,0,-38.4734	0/0:17:17,0:17:605:0:0:0,-5.11751,-54.7812	0/1:62:27,35:27:962:35:1247:-93.8684,0,-68.233	0/1:8:7,1:7:233:1:36:-1.19004,0,-18.8869	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3757	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6548	0/1:27:16,11:16:562:11:378:-26.2213,0,-42.7815	0/1:44:15,28:15:532:28:989:-76.0181,0,-34.9097	0/0:61:60,0:60:2124:0:0:0,-18.0618,-191.108	0/0:42:41,0:41:1435:0:0:0,-12.3422,-129.083
chr01	11103625	.	A	G	16502.1	PASS	AB=0.533769;ABP=21.1958;AC=36;AF=0.191489;AN=188;AO=983;CIGAR=1X;DP=3834;DPB=3834;DPRA=1.51174;EPP=2137.57;EPPR=6193.88;GTI=5;LEN=1;MEANALT=1;MQM=59.6541;MQMR=59.9923;NS=94;NUMALT=1;ODDS=1.8224;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35086;QR=101873;RO=2851;RPL=983;RPP=2137.57;RPPR=6193.88;RPR=0;RUN=1;SAF=983;SAP=2137.57;SAR=0;SRF=2851;SRP=6193.88;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.158	0/1:26:9,17:9:324:17:608:-47.212,0,-21.6791	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:36:36,0:36:1258:0:0:0,-10.8371,-113.518	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7675	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:29:18,11:18:640:11:396:-27.2529,0,-49.1994	0/0:49:49,0:49:1736:0:0:0,-14.7505,-156.525	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/1:46:22,24:22:792:24:864:-64.2352,0,-57.7501	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:34:16,18:16:576:18:644:-48.0523,0,-41.94	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:20:10,10:10:356:10:356:-26.3606,0,-26.3606	0/1:15:10,5:10:356:5:180:-12.0366,0,-27.8658	0/1:84:38,46:38:1341:46:1647:-123.138,0,-95.6969	0/1:67:22,45:22:792:45:1608:-124.836,0,-51.4367	0/1:49:20,29:20:720:29:1040:-79.163,0,-50.3783	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:61:48,13:48:1728:13:468:-24.0968,0,-137.442	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:130:56,74:56:1970:74:2652:-199.79,0,-138.438	0/0:114:114,0:114:4100:0:0:0,-34.3174,-369.183	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:97:39,58:39:1396:58:2046:-155.193,0,-96.7392	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:110:50,60:50:1796:60:2135:-159.291,0,-128.809	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:12:6,6:6:216:6:212:-15.8041,0,-16.1782	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:38:15,23:15:540:23:804:-61.2328,0,-37.4974	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:79:79,0:79:2804:0:0:0,-23.7814,-252.599	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:64:30,34:30:1080:34:1216:-90.4667,0,-78.2473	0/1:75:39,36:39:1389:36:1283:-93.1929,0,-102.73	0/1:50:22,28:22:765:28:1008:-75.9467,0,-54.1162	0/1:46:16,30:16:576:30:1076:-83.2466,0,-38.3276	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:33:33,0:33:1150:0:0:0,-9.93399,-103.802	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/0:18:17,1:17:612:1:36:0,-1.82026,-51.8152	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:93:38,55:38:1360:55:1964:-149.031,0,-94.7048	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:60:60,0:60:2122:0:0:0,-18.0618,-191.243	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:58:27,31:27:957:31:1100:-81.8459,0,-68.9841	0/1:66:36,30:36:1288:30:1076:-77.2849,0,-96.3556	0/1:85:47,38:47:1680:38:1341:-95.3893,0,-125.9	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:41:15,26:15:525:26:936:-72.0105,0,-35.2358	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:41:17,24:17:612:24:856:-65.0189,0,-43.0712	0/1:65:26,39:26:932:39:1398:-106.499,0,-64.6319	0/1:119:55,64:55:1964:64:2287:-170.259,0,-141.213	0/1:41:26,15:26:936:15:531:-35.7773,0,-72.2172	0/1:24:14,10:14:504:10:360:-25.5172,0,-38.4734	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.6947	0/1:61:26,35:26:932:35:1234:-92.9974,0,-65.836	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:27:16,11:16:572:11:392:-27.4922,0,-43.6856	0/1:44:16,28:16:576:28:1008:-77.791,0,-38.9297	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.484	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204
chr01	11458467	.	G	A	24858.9	PASS	AB=0.481908;ABP=11.8888;AC=33;AF=0.177419;AN=186;AO=1512;CIGAR=1X;DP=8113;DPB=8113;DPRA=1.27103;EPP=3286.28;EPPR=14200.4;GTI=0;LEN=1;MEANALT=1.05128;MQM=57.3876;MQMR=59.9535;NS=93;NUMALT=1;ODDS=4.65365;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54039;QR=235895;RO=6598;RPL=1512;RPP=3286.28;RPPR=14200.4;RPR=0;RUN=1;SAF=0;SAP=3286.28;SAR=1512;SRF=0;SRP=14330.4;SRR=6598;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:58:28,30:28:995:30:1080:-79.9372,0,-72.4043	0/0:180:179,1:179:6394:1:36:0,-50.5876,-571.947	0/0:187:187,0:187:6690:0:0:0,-56.2926,-602.176	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:95:49,46:49:1755:46:1623:-117.589,0,-129.633	0/0:125:125,0:125:4463:0:0:0,-37.6287,-401.841	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.692	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.019	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:128:128,0:128:4572:0:0:0,-38.5318,-411.647	0/1:97:42,55:42:1508:55:1965:-146.826,0,-106.815	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/1:89:33,56:33:1179:56:2008:-153.596,0,-79.6256	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.573	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:48:26,22:26:936:22:792:-57.04,0,-70.1091	0/1:26:6,20:6:216:20:716:-56.7505,0,-11.9637	0/1:135:75,60:75:2683:60:2126:-150.286,0,-201.064	0/1:155:96,59:96:3413:59:2124:-144.466,0,-260.724	0/1:49:16,33:16:572:33:1188:-92.4229,0,-37.063	0/0:156:156,0:156:5592:0:0:0,-46.9607,-503.27	0/0:50:49,1:49:1732:1:36:0,-11.4532,-152.564	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:142:95,47:95:3379:47:1688:-108.696,0,-261.581	0/0:143:143,0:143:5097:0:0:0,-43.0473,-458.874	0/0:32:31,0:31:1116:0:0:0,-9.33193,-100.392	0/1:181:91,90:91:3256:90:3191:-231.449,0,-238.775	0/0:107:106,1:106:3780:1:36:0,-28.6119,-336.768	0/0:116:116,0:116:4118:0:0:0,-34.9195,-370.8	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:212:80,132:80:2876:132:4721:-360.97,0,-195.258	0/0:77:77,0:77:2740:0:0:0,-23.1793,-246.842	0/1:55:15,40:15:540:40:1419:-110.773,0,-32.3799	.:.:.:.:.:.:.:.	0/1:120:71,49:71:2544:49:1745:-120.693,0,-193.084	0/0:33:33,0:33:1170:0:0:0,-9.93399,-105.604	0/0:151:149,1:149:5313:1:36:0,-41.9165,-474.707	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.104	0/0:99:97,2:97:3488:2:72:0,-22.9652,-307.293	0/0:154:154,0:154:5508:0:0:0,-46.3586,-495.828	0/1:144:102,42:102:3639:42:1504:-92.1525,0,-284.366	0/1:83:47,36:47:1680:36:1281:-90.5715,0,-126.502	0/1:69:40,29:40:1428:29:1025:-71.4597,0,-108.046	0/1:116:56,60:56:2016:60:2160:-159.693,0,-146.793	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/0:125:125,0:125:4483:0:0:0,-37.6287,-403.638	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7434	0/0:173:171,1:171:6055:1:36:0,-48.5387,-541.46	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:19:13,6:13:464:6:216:-14.0691,0,-36.3779	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:104:104,0:104:3707:0:0:0,-31.3071,-333.833	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:147:147,0:147:5272:0:0:0,-44.2514,-474.611	0/0:130:130,0:130:4655:0:0:0,-39.1339,-419.111	0/0:94:94,0:94:3367:0:0:0,-28.2968,-303.245	0/0:105:105,0:105:3743:0:0:0,-31.6081,-337.07	0/0:196:196,0:196:7000:0:0:0,-59.0019,-630.061	0/0:149:149,0:149:5339:0:0:0,-44.8535,-480.642	0/0:61:61,0:61:2187:0:0:0,-18.3628,-197.095	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.924	0/0:46:46,0:46:1630:0:0:0,-13.8474,-146.987	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.152	0/1:93:51,42:51:1819:42:1500:-107.165,0,-135.889	0/1:76:40,36:40:1432:36:1275:-91.4739,0,-106.299	0/1:69:47,22:47:1684:22:786:-50.255,0,-131.031	0/0:152:152,0:152:5434:0:0:0,-45.7566,-489.186	0/1:99:65,34:65:2332:34:1209:-78.9958,0,-180.338	0/0:120:120,0:120:4273:0:0:0,-36.1236,-384.748	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:97:58,39:58:2076:39:1404:-97.2227,0,-157.911	0/1:62:34,28:34:1224:28:1002:-71.2003,0,-91.8023	0/1:164:90,74:90:3218:74:2640:-188.277,0,-240.469	0/1:58:28,30:28:1008:30:1072:-79.2596,0,-73.5766	0/1:91:45,46:45:1620:46:1656:-121.89,0,-118.696	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:157:81,76:81:2908:76:2736:-199.11,0,-214.693	0/1:30:14,16:14:504:16:576:-43.1249,0,-36.6672	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.879	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/1:112:56,56:56:2004:56:2000:-146.299,0,-146.918	0/1:119:26,93:26:932:93:3323:-263.39,0,-48.3763	0/0:188:188,0:188:6735:0:0:0,-56.5936,-606.213	0/0:97:97,0:97:3462:0:0:0,-29.1999,-310.772
chr01	11458478	.	AAGT	GAGT,GAGC	173613	PASS	AB=0.513644,0.485072;ABP=8.04686,9.03953;AC=153,33;AF=0.822581,0.177419;AN=186;AO=6476,1521;CIGAR=1X3M,1X2M1X;DP=8020;DPB=8020.5;DPRA=0,1.28979;EPP=14065.5,3305.82;EPPR=11.6962;GTI=0;LEN=1,4;MEANALT=1.62366,2.15;MQM=59.9591,57.3346;MQMR=60;NS=93;NUMALT=2;ODDS=5.61467;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=231075,53407;QR=138;RO=4;RPL=6476,1521;RPP=14065.5,3305.82;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=14065.5,3305.82;SAR=6476,1521;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38,0:0:0:38,0:1360,0:-122.701,-11.4391,0,-122.701,-11.4391,-122.701	1/2:58:0,28,30:0:0:28,30:996,1065:-168.196,-87.025,-78.5962,-81.526,0,-72.4951	1/1:176:0,175,1:0:0:175,1:6263,36:-563.405,-52.6803,0,-560.468,-49.3835,-560.167	1/1:184:0,184,0:0:0:184,0:6576,0:-591.923,-55.3895,0,-591.923,-55.3895,-591.923	1/1:43:0,43,0:0:0:43,0:1528,0:-137.813,-12.9443,0,-137.813,-12.9443,-137.813	1/1:29:0,29,0:0:0:29,0:1032,0:-93.1935,-8.72987,0,-93.1935,-8.72987,-93.1935	1/2:93:0,46,47:0:0:46,47:1652,1647:-268.956,-134.191,-120.344,-135.119,0,-120.97	1/1:121:0,121,0:0:0:121,0:4304,0:-387.54,-36.4246,0,-387.54,-36.4246,-387.54	1/1:94:0,94,0:0:0:94,0:3351,0:-301.807,-28.2968,0,-301.807,-28.2968,-301.807	1/1:64:0,64,0:0:0:64,0:2292,0:-206.54,-19.2659,0,-206.54,-19.2659,-206.54	1/1:49:0,49,0:0:0:49,0:1752,0:-157.964,-14.7505,0,-157.964,-14.7505,-157.964	1/1:127:0,127,0:0:0:127,0:4524,0:-407.327,-38.2308,0,-407.327,-38.2308,-407.327	1/2:95:0,41,54:0:0:41,54:1468,1907:-274.704,-154.986,-142.644,-120.074,0,-103.818	1/1:65:0,65,0:0:0:65,0:2336,0:-210.499,-19.567,0,-210.499,-19.567,-210.499	1/2:85:0,33,52:0:0:33,52:1176,1840:-245.735,-149.876,-139.942,-96.2138,0,-80.5602	1/1:76:0,75,0:0:0:75,0:2675,0:-240.709,-22.5773,0,-240.709,-22.5773,-240.709	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/2:49:0,26,23:0:0:26,23:928,801:-141.033,-65.3737,-57.5469,-76.0108,0,-69.0871	1/2:26:0,6,20:0:0:6,20:216,717:-76.2675,-58.6424,-56.8363,-17.9843,0,-11.9637	1/2:136:0,74,62:0:0:74,62:2660,2169:-392.997,-176.01,-153.734,-217.34,0,-198.676	1/2:156:0,95,61:0:0:95,61:3376,2145:-449.8,-174.694,-146.097,-275.458,0,-257.095	1/2:51:0,16,35:0:0:16,35:564,1210:-144.546,-98.6223,-93.8058,-46.2738,0,-35.7378	1/1:147:1,146,0:1:32:146,0:5219,0:-466.65,-41.0521,0,-466.951,-43.9504,-469.529	1/1:52:0,50,1:0:0:50,1:1780,36:-160.141,-15.0515,0,-157.203,-12.0941,-156.902	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/2:138:0,89,47:0:0:89,47:3183,1670:-394.946,-135.399,-108.608,-259.552,0,-245.403	1/1:139:0,139,0:0:0:139,0:4964,0:-446.91,-41.8432,0,-446.91,-41.8432,-446.91	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/2:182:0,91,91:0:0:91,91:3264,3154:-521.671,-255.437,-228.043,-266.586,0,-239.193	1/1:106:0,104,1:0:0:104,1:3724,36:-334.972,-31.3071,0,-332.035,-28.3697,-331.734	1/1:113:0,113,0:0:0:113,0:4020,0:-361.984,-34.0164,0,-361.984,-34.0164,-361.984	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:11:0,11,0:0:0:11,0:388,0:-35.2574,-3.31133,0,-35.2574,-3.31133,-35.2574	1/1:27:0,27,0:0:0:27,0:961,0:-86.8053,-8.12781,0,-86.8053,-8.12781,-86.8053	1/2:212:0,82,130:0:0:82,130:2923,4566:-610.033,-371.767,-347.082,-238.621,0,-199.487	1/1:74:0,74,0:0:0:74,0:2632,0:-237.128,-22.2762,0,-237.128,-22.2762,-237.128	1/2:55:0,15,40:0:0:15,40:540,1408:-158.419,-114.355,-109.84,-44.4211,0,-32.3799	.:.:.:.:.:.:.:.	1/2:121:0,72,49:0:0:72,49:2560,1697:-346.823,-138.199,-116.525,-208.974,0,-194.223	1/1:33:0,33,0:0:0:33,0:1166,0:-105.245,-9.93399,0,-105.245,-9.93399,-105.245	1/1:152:0,151,1:0:0:151,1:5379,36:-483.837,-45.4555,0,-480.9,-42.1587,-480.599	1/1:86:0,86,0:0:0:86,0:3079,0:-277.338,-25.8886,0,-277.338,-25.8886,-277.338	1/1:55:0,55,0:0:0:55,0:1931,0:-174.065,-16.5567,0,-174.065,-16.5567,-174.065	1/1:97:0,94,3:0:0:94,3:3340,108:-300.46,-28.2968,0,-291.647,-19.1247,-290.744	1/1:150:0,149,0:0:0:149,0:5288,0:-475.789,-44.8535,0,-475.789,-44.8535,-475.789	1/2:143:0,101,42:0:0:101,42:3616,1456:-413.43,-118.539,-88.135,-295.241,0,-282.598	1/2:83:0,47,36:0:0:47,36:1684,1292:-243.051,-105.711,-91.5621,-137.699,0,-126.862	1/2:69:0,40,29:0:0:40,29:1432,1013:-199.339,-82.5547,-70.5135,-117.136,0,-108.407	1/2:117:0,56,61:0:0:56,61:2000,2171:-340.304,-177.244,-160.386,-163.416,0,-145.053	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:76:0,75,0:0:0:75,0:2680,0:-241.086,-22.5773,0,-241.086,-22.5773,-241.086	1/1:124:0,124,0:0:0:124,0:4432,0:-399.052,-37.3277,0,-399.052,-37.3277,-399.052	1/1:10:0,10,0:0:0:10,0:356,0:-32.3809,-3.0103,0,-32.3809,-3.0103,-32.3809	1/1:163:0,161,1:0:0:161,1:5712,36:-513.899,-48.4658,0,-510.961,-45.4735,-510.66	1/1:39:0,39,0:0:0:39,0:1376,0:-124.139,-11.7402,0,-124.139,-11.7402,-124.139	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677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chr01	11459746	.	T	C	142438	PASS	AB=0.487637;ABP=8.59438;AC=151;AF=0.803191;AN=188;AO=6702;CIGAR=1X;DP=8884;DPB=8884;DPRA=96.5435;EPP=14374.4;EPPR=4613.83;GTI=3;LEN=1;MEANALT=1.03261;MQM=59.9845;MQMR=59.9995;NS=94;NUMALT=1;ODDS=0.662662;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=239515;QR=77698;RO=2179;RPL=6681;RPP=14374.4;RPPR=4613.83;RPR=21;RUN=1;SAF=0;SAP=14556.2;SAR=6702;SRF=0;SRP=4734.65;SRR=2179;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:836:-75.5539,-7.22472,0	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9907	1/1:144:2,142:2:72:142:5080:-450.505,-36.5116,0	1/1:289:1,288:1:36:288:10266:-920.267,-83.3994,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:20:0,19:0:0:19:684:-61.5305,-5.71957,0	0/1:226:97,129:97:3445:129:4599:-346.04,0,-242.231	1/1:126:0,126:0:0:126:4497:-404.899,-37.9298,0	1/1:106:0,106:0:0:106:3796:-341.837,-31.9092,0	1/1:129:0,129:0:0:129:4605:-414.423,-38.8329,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	0/1:57:33,24:33:1188:24:860:-60.5631,0,-90.0699	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:74:39,35:39:1380:35:1260:-91.4293,0,-102.223	1/1:53:0,53:0:0:53:1899:-171.187,-15.9546,0	1/1:104:1,103:1:36:103:3694:-329.063,-27.7088,0	0/1:51:28,23:28:1004:23:828:-59.4916,0,-75.3233	0/1:47:20,27:20:712:27:968:-73.289,0,-50.2582	0/1:246:146,100:146:5200:100:3553:-245.925,0,-394.089	0/1:196:84,112:84:2993:112:3980:-299.389,0,-210.599	0/1:61:42,19:42:1496:19:684:-43.5275,0,-116.572	1/1:83:1,82:1:36:82:2928:-260.157,-21.3872,0	1/1:125:7,118:7:248:118:4194:-354.976,-14.9646,0	1/1:43:0,43:0:0:43:1525:-137.541,-12.9443,0	0/1:369:165,204:165:5900:204:7306:-546.506,0,-420.031	1/1:205:0,205:0:0:205:7363:-662.715,-61.7112,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:342:191,151:191:6738:151:5415:-384.525,0,-503.544	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:146:0,146:0:0:146:5211:-469.128,-43.9504,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:209:110,99:110:3932:99:3522:-254.272,0,-291.158	1/1:125:0,125:0:0:125:4445:-400.221,-37.6288,0	0/1:58:24,34:24:860:34:1207:-91.4755,0,-60.2621	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:174:88,86:88:3137:86:3058:-223.068,0,-230.176	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:94:0,93:0:0:93:3325:-299.255,-27.9958,0	1/1:93:0,93:0:0:93:3333:-300.187,-27.9958,0	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	1/1:68:0,68:0:0:68:2429:-218.864,-20.47,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:145:78,67:78:2777:67:2373:-170.178,0,-206.52	0/1:108:58,50:58:2080:50:1784:-128.331,0,-154.959	0/1:161:68,93:68:2436:93:3313:-249.922,0,-171.029	0/1:216:88,128:88:3129:128:4568:-346.262,0,-216.813	1/1:6:0,6:0:0:6:205:-18.7836,-1.80618,0	1/1:66:1,65:1:36:65:2324:-205.822,-16.2697,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:104:0,104:0:0:104:3702:-333.381,-31.3071,0	1/1:56:0,56:0:0:56:2014:-181.533,-16.8577,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:83:0,83:0:0:83:2960:-266.632,-24.9855,0	1/1:113:1,112:1:36:112:3974:-354.249,-30.4181,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:192:0,192:0:0:192:6865:-617.918,-57.7978,0	1/1:179:1,178:1:36:178:6363:-569.161,-50.2861,0	1/1:96:0,96:0:0:96:3416:-307.627,-28.8989,0	1/1:74:0,74:0:0:74:2647:-238.476,-22.2762,0	1/1:124:6,118:6:208:118:4210:-360.02,-18.2686,0	1/1:63:1,62:1:36:62:2222:-196.645,-15.3666,0	1/1:25:0,25:0:0:25:898:-81.1408,-7.52575,0	1/1:59:0,59:0:0:59:2109:-190.077,-17.7608,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:30:0,30:0:0:30:1053:-95.0786,-9.0309,0	0/1:99:59,40:59:2093:40:1436:-99.7357,0,-158.836	0/1:69:42,27:42:1504:27:964:-66.3058,0,-114.884	0/1:162:77,85:77:2748:85:3052:-226.142,0,-198.796	1/1:206:0,206:0:0:206:7345:-661.1,-62.0122,0	0/1:43:22,21:22:792:21:752:-55.062,0,-58.6614	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:116:60,56:60:2129:56:1988:-144.272,0,-156.957	0/1:104:73,31:73:2612:31:1101:-68.0912,0,-204.021	0/1:256:126,130:126:4476:130:4668:-343.216,0,-325.947	0/1:122:70,51:70:2501:51:1832:-128.376,0,-188.556	0/1:67:38,29:38:1368:29:1036:-73.3849,0,-103.252	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	0/1:145:73,72:73:2608:72:2584:-189.159,0,-191.319	0/1:39:19,20:19:684:20:720:-53.3886,0,-50.1502	1/1:86:0,86:0:0:86:3096:-278.866,-25.8886,0	1/1:76:0,76:0:0:76:2725:-245.493,-22.8783,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:111:58,53:58:2084:53:1892:-137.144,0,-154.416	0/1:75:48,27:48:1724:27:957:-63.8666,0,-132.868	1/1:114:1,113:1:36:113:4051:-361.178,-30.7191,0	1/1:118:0,118:0:0:118:4231:-380.911,-35.5215,0
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chr01	11463978	.	A	G	54242.3	PASS	AB=0.507876;ABP=6.39655;AC=36;AF=0.191489;AN=188;AO=3206;CIGAR=1X;DP=13510;DPB=13510;DPRA=1.4459;EPP=6930.05;EPPR=22148.2;GTI=6;LEN=1;MEANALT=1.09524;MQM=59.9925;MQMR=59.9932;NS=94;NUMALT=1;ODDS=0.133203;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114284;QR=368196;RO=10298;RPL=3202;RPP=6930.05;RPPR=22148.2;RPR=4;RUN=1;SAF=0;SAP=6964.75;SAR=3206;SRF=0;SRP=22364.8;SRR=10298;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:175:103,72:103:3684:72:2547:-176.798,0,-279.083	0/0:188:188,0:188:6735:0:0:0,-56.5936,-606.223	0/0:314:313,0:313:11215:0:0:0,-94.2224,-1009.02	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.384	0/1:208:99,108:99:3548:108:3828:-282.173,0,-256.984	0/0:184:184,0:184:6540:0:0:0,-55.3895,-588.497	0/0:155:155,0:155:5529:0:0:0,-46.6596,-497.735	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/0:143:143,0:143:5097:0:0:0,-43.0473,-458.874	0/0:101:101,0:101:3599:0:0:0,-30.404,-324.114	0/1:119:60,59:60:2147:59:2116:-154.886,0,-157.674	0/0:133:133,0:133:4752:0:0:0,-40.037,-427.836	0/1:88:51,37:51:1832:37:1328:-93.3316,0,-138.67	0/0:87:86,1:86:3067:1:36:0,-22.5913,-272.661	0/0:117:117,0:117:4167:0:0:0,-35.2205,-375.214	0/1:100:47,53:47:1692:53:1900:-141.175,0,-122.464	0/1:86:42,44:42:1482:44:1571:-115.792,0,-107.784	0/1:312:131,180:131:4696:180:6440:-485.707,0,-328.819	0/1:197:88,109:88:3148:109:3877:-289.82,0,-224.243	0/1:113:35,78:35:1256:78:2771:-215.615,0,-79.3289	0/0:106:106,0:106:3768:0:0:0,-31.9092,-339.319	0/1:103:92,11:92:3287:11:396:-4.97666,0,-265.043	0/0:110:109,1:109:3900:1:36:0,-29.515,-347.596	0/1:443:220,222:220:7899:222:7917:-579.142,0,-577.516	0/0:265:265,0:265:9501:0:0:0,-79.7729,-855.044	0/0:52:52,0:52:1850:0:0:0,-15.6536,-166.779	0/1:367:189,178:189:6732:178:6375:-463.361,0,-495.478	0/0:104:104,0:104:3715:0:0:0,-31.3071,-334.552	0/0:201:199,1:199:7119:1:32:0,-57.2716,-637.623	0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4154	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:227:119,108:119:4243:108:3855:-278.81,0,-313.717	0/0:207:207,0:207:7419:0:0:0,-62.3132,-667.746	0/1:110:59,51:59:2107:51:1824:-131.328,0,-156.785	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/1:262:124,138:124:4435:138:4893:-361.656,0,-320.451	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:164:164,0:164:5876:0:0:0,-49.3689,-528.95	0/0:115:115,0:115:4106:0:0:0,-34.6184,-369.725	0/0:90:90,0:90:3210:0:0:0,-27.0927,-289.122	0/0:124:124,0:124:4436:0:0:0,-37.3277,-399.412	0/0:166:166,0:166:5925:0:0:0,-49.971,-533.359	0/1:261:144,117:144:5132:117:4163:-296.285,0,-383.453	0/1:153:69,84:69:2435:84:2998:-223.993,0,-173.349	0/1:241:108,133:108:3872:133:4753:-355.38,0,-276.126	0/1:227:111,116:111:3972:116:4123:-302.924,0,-289.337	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:247:247,0:247:8866:0:0:0,-74.3544,-797.92	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/1:11:10,1:10:351:1:36:-0.286945,0,-28.6153	0/0:213:213,0:213:7604:0:0:0,-64.1194,-684.398	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.986	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:137:137,0:137:4907:0:0:0,-41.2411,-441.78	0/0:174:170,4:170:6083:4:144:0,-39.0656,-534.258	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:182:182,0:182:6488:0:0:0,-54.7875,-584.006	0/0:333:332,0:332:11865:0:0:0,-99.942,-1067.5	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.571	0/0:158:158,0:158:5647:0:0:0,-47.5627,-508.351	0/0:283:279,4:279:9962:4:140:0,-72.2469,-883.574	0/0:138:135,3:135:4827:3:99:0,-32.3056,-425.348	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:146:146,0:146:5252:0:0:0,-43.9504,-472.814	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:99:50,49:50:1787:49:1730:-126.182,0,-131.31	0/1:95:16,79:16:576:79:2786:-222.383,0,-23.5771	0/1:403:224,179:224:8001:179:6357:-450.909,0,-598.797	0/0:240:240,0:240:8590:0:0:0,-72.2472,-773.095	0/1:211:86,125:86:3054:125:4468:-338.773,0,-211.572	0/0:165:165,0:165:5878:0:0:0,-49.6699,-529.133	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:246:126,120:126:4512:120:4249:-308.537,0,-332.195	0/1:175:71,104:71:2544:104:3704:-280.881,0,-176.53	0/1:455:233,222:233:8321:222:7931:-576.847,0,-611.93	0/1:146:70,76:70:2495:76:2710:-200.193,0,-180.852	0/1:112:53,59:53:1884:59:2112:-156.634,0,-136.123	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536	0/1:206:110,96:110:3939:96:3435:-247.351,0,-292.689	0/1:51:21,30:21:748:30:1080:-82.1607,0,-52.2928	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/0:123:123,0:123:4399:0:0:0,-37.0267,-396.082	0/0:106:106,0:106:3790:0:0:0,-31.9092,-341.297	0/1:171:90,81:90:3232:81:2912:-210.838,0,-239.625	0/1:80:25,55:25:900:55:1968:-153.313,0,-57.2386	0/0:191:191,0:191:6856:0:0:0,-57.4967,-617.107	0/0:144:144,0:144:5164:0:0:0,-43.3483,-464.273
chr01	11625384	.	C	A	124270	PASS	AB=0.522884;ABP=16.8249;AC=153;AF=0.81383;AN=188;AO=5867;CIGAR=1X;DP=7328;DPB=7328;DPRA=0;EPP=12743;EPPR=3164.68;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.7237;MQMR=59.9514;NS=94;NUMALT=1;ODDS=2.81716;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207651;QR=51971;RO=1460;RPL=2;RPP=12725.7;RPPR=3164.68;RPR=5865;RUN=1;SAF=2;SAP=12725.7;SAR=5865;SRF=0;SRP=3173.36;SRR=1460;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:67:0,67:0:0:67:2360:-212.636,-20.169,0	0/1:54:24,30:24:860:30:1072:-80.5029,0,-61.4662	1/1:128:0,127:0:0:127:4510:-405.654,-38.2308,0	1/1:186:0,186:0:0:186:6590:-593.174,-55.9916,0	1/1:48:0,48:0:0:48:1664:-150.037,-14.4494,0	1/1:83:0,83:0:0:83:2959:-266.529,-24.9855,0	0/1:96:40,56:40:1413:56:1954:-147.231,0,-98.5664	1/1:97:0,97:0:0:97:3427:-308.603,-29.1999,0	1/1:124:0,124:0:0:124:4384:-394.663,-37.3277,0	1/1:85:0,85:0:0:85:3001:-270.111,-25.5876,0	1/1:34:0,34:0:0:34:1207:-108.928,-10.235,0	1/1:99:0,99:0:0:99:3475:-312.92,-29.802,0	0/1:60:29,31:29:1006:31:1097:-80.9753,0,-72.7873	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:46:22,24:22:784:24:860:-63.8745,0,-57.0365	1/1:32:0,32:0:0:32:1148:-103.627,-9.63296,0	1/1:30:1,29:1:36:29:1023:-88.7835,-5.43263,0	0/1:22:13,9:13:464:9:324:-22.875,0,-35.4748	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:102:51,51:51:1820:51:1776:-129.41,0,-133.376	0/1:119:53,66:53:1855:66:2318:-173.049,0,-131.397	0/1:65:47,18:47:1672:18:640:-38.3624,0,-131.198	1/1:99:0,99:0:0:99:3523:-317.257,-29.802,0	1/1:74:4,70:4:144:70:2500:-211.935,-8.9626,0	1/1:63:0,63:0:0:63:2246:-202.402,-18.9649,0	0/1:304:146,158:146:5220:158:5584:-411.123,0,-378.408	1/1:196:0,196:0:0:196:6895:-620.557,-59.0019,0	1/1:25:0,25:0:0:25:874:-78.9706,-7.52575,0	0/1:179:63,116:63:2251:116:4135:-318.423,0,-148.968	1/1:158:1,157:1:36:157:5553:-496.263,-43.9645,0	1/1:66:0,66:0:0:66:2368:-213.376,-19.868,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:5:1,4:1:32:4:144:-11.8085,0,-1.69416	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:20:0,20:0:0:20:690:-62.4063,-6.0206,0	0/1:144:72,72:72:2561:72:2556:-186.943,0,-187.391	1/1:117:0,117:0:0:117:4144:-373.136,-35.2205,0	0/1:42:22,20:22:784:20:707:-51.3113,0,-58.2407	0/1:19:12,7:12:428:7:248:-16.9446,0,-33.094	0/1:128:58,70:58:2080:70:2441:-181.364,0,-148.938	1/1:22:0,22:0:0:22:775:-70.0642,-6.62266,0	1/1:137:0,137:0:0:137:4851:-436.707,-41.2411,0	1/1:50:0,50:0:0:50:1787:-161.105,-15.0515,0	1/1:52:0,52:0:0:52:1856:-167.315,-15.6536,0	1/1:139:0,139:0:0:139:4833:-435.092,-41.8432,0	1/1:73:0,73:0:0:73:2596:-233.863,-21.9752,0	0/1:151:75,76:75:2670:76:2699:-197.677,0,-195.089	0/1:55:36,19:36:1292:19:671:-44.1568,0,-100.027	0/1:57:24,33:24:860:33:1179:-89.2535,0,-60.5631	0/1:147:64,83:64:2300:83:2903:-217.254,0,-163.009	1/1:9:0,9:0:0:9:324:-29.5054,-2.70927,0	1/1:81:0,81:0:0:81:2859:-257.521,-24.3834,0	1/1:37:0,37:0:0:37:1307:-117.924,-11.1381,0	1/1:16:0,16:0:0:16:567:-51.3584,-4.81648,0	1/1:122:0,122:0:0:122:4326:-389.503,-36.7257,0	1/1:46:0,46:0:0:46:1605:-144.728,-13.8474,0	1/1:22:0,22:0:0:22:773:-69.8886,-6.62266,0	0/1:23:13,10:13:460:10:356:-25.4576,0,-34.8117	1/1:127:0,127:0:0:127:4474:-402.519,-38.2308,0	1/1:72:0,72:0:0:72:2551:-229.747,-21.6742,0	1/1:11:0,11:0:0:11:392:-35.6177,-3.31133,0	1/1:142:0,142:0:0:142:5043:-454.004,-42.7463,0	1/1:131:1,130:1:32:130:4603:-411.225,-36.2356,0	1/1:69:0,69:0:0:69:2417:-217.777,-20.7711,0	1/1:75:1,74:1:36:74:2644:-234.598,-18.979,0	1/1:81:0,81:0:0:81:2836:-255.471,-24.3834,0	1/1:131:3,128:3:108:128:4575:-401.84,-29.3598,0	1/1:35:0,35:0:0:35:1252:-112.966,-10.5361,0	1/1:61:0,61:0:0:61:2118:-190.777,-18.3628,0	1/1:35:0,35:0:0:35:1244:-112.263,-10.5361,0	1/1:24:0,24:0:0:24:851:-76.9095,-7.22472,0	0/1:184:88,96:88:3123:96:3370:-248.103,0,-225.908	0/1:112:49,63:49:1752:63:2220:-166.331,0,-124.249	0/1:135:68,67:68:2406:67:2365:-172.449,0,-176.149	1/1:104:0,104:0:0:104:3707:-333.826,-31.3071,0	0/1:84:51,33:51:1815:33:1183:-81.4396,0,-138.154	1/1:146:0,146:0:0:146:5195:-467.643,-43.9504,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	0/1:76:42,34:42:1499:34:1206:-85.9662,0,-112.326	0/1:55:28,27:28:1000:27:959:-70.0687,0,-73.7587	0/1:174:69,105:69:2480:105:3743:-284.628,0,-171.073	0/1:40:18,22:18:635:22:792:-59.5645,0,-45.4358	0/1:42:20,22:20:708:22:788:-58.6015,0,-51.4023	1/1:37:0,37:0:0:37:1316:-118.736,-11.1381,0	0/1:109:55,54:55:1934:54:1896:-138.1,0,-141.523	0/1:18:6,12:6:208:12:432:-33.8027,0,-13.6405	1/1:71:0,71:0:0:71:2517:-226.735,-21.3731,0	1/1:69:0,69:0:0:69:2471:-222.634,-20.7711,0	1/1:19:0,19:0:0:19:684:-61.8857,-5.71957,0	0/1:91:38,53:38:1347:53:1875:-141.635,0,-94.1357	0/1:65:38,27:38:1356:27:968:-67.8657,0,-102.774	1/1:90:0,90:0:0:90:3182:-286.606,-27.0927,0	1/1:63:0,63:0:0:63:2226:-200.597,-18.9649,0
chr01	11637844	.	G	T	19375.5	PASS	AB=0.468214;ABP=20.404;AC=34;AF=0.180851;AN=188;AO=935;CIGAR=1X;DP=5069;DPB=5069;DPRA=1.17046;EPP=604.708;EPPR=8973.36;GTI=0;LEN=1;MEANALT=1.05128;MQM=59.907;MQMR=30.2111;NS=94;NUMALT=1;ODDS=4.98089;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33445;QR=147549;RO=4131;RPL=722;RPP=604.708;RPPR=8973.36;RPR=213;RUN=1;SAF=935;SAP=2033.34;SAR=0;SRF=4131;SRP=8973.36;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:396:0:0:0,-3.31133,-27.0393	0/1:44:32,12:32:1148:12:423:-25.1597,0,-66.0364	0/0:28:28,0:28:1008:0:0:0,-8.42884,-68.7262	0/0:41:41,0:41:1468:0:0:0,-12.3422,-110.637	0/0:18:18,0:18:648:0:0:0,-5.41854,-47.1642	0/0:13:13,0:13:468:0:0:0,-3.91339,-32.2872	0/1:28:15,13:15:540:13:468:-34.0308,0,-32.9753	0/0:36:36,0:36:1288:0:0:0,-10.8371,-88.7793	0/0:26:26,0:26:932:0:0:0,-7.82678,-64.0567	0/0:23:23,0:23:809:0:0:0,-6.92369,-62.2797	0/0:127:127,0:127:4523:0:0:0,-38.2308,-340.93	0/0:29:29,0:29:1036:0:0:0,-8.72987,-71.5411	0/1:31:11,20:11:383:20:716:-55.4358,0,-17.6926	0/0:24:24,0:24:839:0:0:0,-7.22472,-62.2313	0/1:21:11,10:11:396:10:345:-25.0592,0,-23.8547	0/0:9:9,0:9:320:0:0:0,-2.70927,-22.6441	0/0:27:27,0:27:968:0:0:0,-8.12781,-66.3921	0/1:15:8,7:8:288:7:252:-18.5135,0,-15.4588	0/1:93:51,42:51:1824:42:1504:-107.659,0,-96.9874	0/1:50:29,21:29:1044:21:752:-52.9548,0,-63.9658	0/1:40:22,18:22:788:18:640:-45.8881,0,-44.9688	0/1:34:14,20:14:504:20:716:-54.5327,0,-30.2478	0/0:36:36,0:36:1269:0:0:0,-10.8371,-97.5847	0/0:24:23,1:23:824:1:36:0,-3.62644,-56.3739	0/0:23:23,0:23:820:0:0:0,-6.92369,-60.0491	0/1:74:42,32:42:1512:32:1140:-80.633,0,-97.3057	0/0:70:70,0:70:2512:0:0:0,-21.0721,-181.644	0/0:10:10,0:10:356:0:0:0,-3.0103,-26.3105	0/1:69:47,22:47:1684:22:788:-50.4728,0,-112.877	0/0:33:33,0:33:1160:0:0:0,-9.93399,-84.9844	0/0:18:17,0:17:608:0:0:0,-5.11751,-46.0986	0/0:204:204,0:204:7309:0:0:0,-61.4101,-529.842	0/0:143:143,0:143:5128:0:0:0,-43.0473,-372.401	0/1:80:36,44:36:1277:44:1580:-118.409,0,-64.1254	0/0:231:231,0:231:8256:0:0:0,-69.5379,-568.359	0/0:85:85,0:85:3056:0:0:0,-25.5875,-209.858	0/1:84:39,45:39:1396:45:1603:-119.273,0,-84.7437	0/0:52:52,0:52:1868:0:0:0,-15.6536,-135.735	0/1:162:72,90:72:2554:90:3219:-241.165,0,-127.903	0/1:111:83,28:83:2964:28:1004:-57.2615,0,-181.399	0/1:40:25,15:25:896:15:540:-36.8953,0,-53.4573	0/0:91:91,0:91:3235:0:0:0,-27.3937,-235.069	0/0:41:41,0:41:1463:0:0:0,-12.3422,-106.806	0/0:30:30,0:30:1071:0:0:0,-9.0309,-81.2015	0/0:32:32,0:32:1139:0:0:0,-9.63296,-86.7186	0/0:38:38,0:38:1360:0:0:0,-11.4391,-107.445	0/0:11:11,0:11:396:0:0:0,-3.31133,-27.4392	0/1:45:21,24:21:756:24:860:-64.1755,0,-44.4899	0/1:29:14,15:14:500:15:531:-39.0725,0,-29.0437	0/1:30:16,13:16:576:13:464:-33.008,0,-35.2043	0/1:37:22,15:22:792:15:524:-36.3415,0,-51.8873	0/0:148:148,0:148:5290:0:0:0,-44.5524,-395.913	0/0:34:34,0:34:1224:0:0:0,-10.235,-84.3022	0/0:11:11,0:11:392:0:0:0,-3.31133,-31.5735	0/0:89:89,0:89:3177:0:0:0,-26.7917,-219.242	0/0:23:23,0:23:815:0:0:0,-6.92369,-59.9308	0/0:16:16,0:16:561:0:0:0,-4.81648,-41.6415	0/0:73:73,0:73:2598:0:0:0,-21.9752,-203.675	0/1:192:116,75:116:4115:75:2692:-184.668,0,-260.253	0/0:13:12,1:12:428:1:36:0,-0.315115,-27.7861	0/0:52:52,0:52:1846:0:0:0,-15.6536,-140.893	0/0:100:100,0:100:3573:0:0:0,-30.103,-269.537	0/0:24:24,0:24:845:0:0:0,-7.22472,-66.7835	0/0:48:48,0:48:1686:0:0:0,-14.4494,-129.785	0/0:25:25,0:25:892:0:0:0,-7.52575,-65.3945	0/0:24:24,0:24:864:0:0:0,-7.22472,-64.3438	0/0:54:51,3:51:1836:3:104:0,-6.55281,-129.833	0/0:56:55,1:55:1980:1:36:0,-14.7711,-148.573	0/0:66:66,0:66:2372:0:0:0,-19.868,-172.31	0/0:25:25,0:25:892:0:0:0,-7.52575,-61.8413	0/0:31:31,0:31:1104:0:0:0,-9.33193,-88.2139	0/0:170:169,1:169:6033:1:36:0,-47.5768,-450.532	0/1:14:10,4:10:356:4:144:-9.0992,0,-20.4493	0/1:16:11,5:11:396:5:180:-11.7356,0,-22.697	0/1:25:18,7:18:644:7:252:-15.5032,0,-39.2227	0/0:43:43,0:43:1548:0:0:0,-12.9443,-118.516	0/1:21:11,10:11:388:10:352:-25.6966,0,-20.7308	0/0:4:4,0:4:140:0:0:0,-1.20412,-10.0485	0/0:159:159,0:159:5707:0:0:0,-47.8638,-391.657	0/1:21:12,9:12:432:9:324:-23.1842,0,-25.3185	0/1:23:12,11:12:432:11:396:-29.0591,0,-22.9009	0/1:40:14,26:14:492:26:932:-72.1577,0,-25.0821	0/1:57:36,21:36:1292:21:756:-51.2085,0,-79.0194	0/1:28:16,12:16:568:12:413:-29.069,0,-35.2124	0/0:27:27,0:27:968:0:0:0,-8.12781,-73.8203	0/1:50:27,23:27:968:23:824:-59.4318,0,-57.2805	0/1:25:5,20:5:180:20:716:-57.242,0,-5.21402	0/0:33:33,0:33:1168:0:0:0,-9.93399,-81.1706	0/0:29:29,0:29:1031:0:0:0,-8.72987,-70.9399	0/0:95:95,0:95:3366:0:0:0,-28.5978,-243.673	0/1:315:141,174:141:5028:174:6247:-467.497,0,-269.543	0/1:38:13,25:13:468:25:900:-69.8819,0,-23.0217	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.8669	0/0:27:27,0:27:955:0:0:0,-8.12781,-73.7702
chr01	12120447	.	A	T	175154	PASS	AB=0.628286;ABP=476.023;AC=151;AF=0.811828;AN=186;AO=8018;CIGAR=1X;DP=9265;DPB=9265;DPRA=40.7033;EPP=17396.5;EPPR=2708.66;GTI=3;LEN=1;MEANALT=1.01099;MQM=59.9479;MQMR=59.9759;NS=93;NUMALT=1;ODDS=1.16126;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286946;QR=43974;RO=1246;RPL=8018;RPP=17413.9;RPPR=2708.66;RPR=0;RUN=1;SAF=8016;SAP=17396.5;SAR=2;SRF=1246;SRP=2708.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:61:0,61:0:0:61:2173:-195.607,-18.3628,0	0/1:164:41,123:41:1464:123:4389:-345.807,0,-82.6871	1/1:141:0,141:0:0:141:5041:-453.832,-42.4452,0	1/1:164:0,164:0:0:164:5868:-528.229,-49.3689,0	1/1:56:0,56:0:0:56:2012:-181.352,-16.8577,0	1/1:66:0,66:0:0:66:2367:-213.287,-19.868,0	0/1:181:72,109:72:2529:109:3882:-295.085,0,-173.376	1/1:139:0,139:0:0:139:4961:-446.637,-41.8432,0	1/1:128:0,128:0:0:128:4592:-413.444,-38.5318,0	1/1:96:0,96:0:0:96:3417:-307.315,-28.8989,0	1/1:21:1,20:1:36:20:711:-60.7174,-2.72336,0	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	0/1:34:17,17:17:591:17:604:-44.4547,0,-43.2802	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:37:18,19:18:644:19:684:-50.7522,0,-47.1525	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:31:18,13:18:635:13:468:-33.1277,0,-48.145	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:202:84,118:84:2968:118:4231:-320.16,0,-206.545	0/1:83:39,44:39:1384:44:1580:-117.506,0,-99.8733	0/1:118:58,60:58:2030:60:2125:-155.994,0,-147.45	1/1:129:0,129:0:0:129:4603:-414.415,-38.8329,0	1/1:212:7,205:7:227:205:7342:-640.078,-43.0699,0	1/1:78:0,78:0:0:78:2783:-250.71,-23.4803,0	0/1:277:95,182:95:3379:182:6524:-503.855,0,-220.942	1/1:272:0,272:0:0:272:9740:-876.355,-81.8802,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:268:99,169:99:3494:169:6045:-463.477,0,-233.998	1/1:202:1,201:1:32:201:7185:-643.498,-57.6087,0	1/1:136:0,136:0:0:136:4876:-438.992,-40.9401,0	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:101:50,51:50:1761:51:1819:-133.587,0,-128.354	1/1:207:0,207:0:0:207:7397:-665.729,-62.3132,0	0/1:21:9,12:9:316:12:429:-32.6278,0,-22.4572	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:150:37,112:37:1315:112:4015:-316.324,0,-73.4378	1/1:18:0,18:0:0:18:648:-58.6412,-5.41854,0	1/1:187:0,187:0:0:187:6702:-603.253,-56.2926,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:34:0,34:0:0:34:1211:-109.292,-10.235,0	1/1:146:0,146:0:0:146:5225:-470.386,-43.9504,0	1/1:202:0,202:0:0:202:7230:-650.752,-60.8081,0	0/1:209:72,137:72:2533:137:4901:-378.322,0,-165.306	0/1:149:46,103:46:1618:103:3700:-288.348,0,-101.054	0/1:120:48,72:48:1692:72:2549:-193.52,0,-116.443	1/1:262:0,262:0:0:262:9381:-844.25,-78.8699,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:155:0,155:0:0:155:5547:-499.35,-46.6597,0	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	1/1:17:0,17:0:0:17:603:-54.5995,-5.11751,0	1/1:197:0,197:0:0:197:7052:-634.737,-59.3029,0	1/1:82:0,82:0:0:82:2934:-264.279,-24.6845,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:18:7,11:7:240:11:392:-30.2015,0,-16.5161	1/1:135:0,135:0:0:135:4835:-435.303,-40.6391,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:383:0,383:0:0:383:13745:-1236.82,-115.294,0	1/1:299:0,299:0:0:299:10719:-964.612,-90.008,0	1/1:81:1,80:1:36:80:2872:-255.118,-20.7852,0	1/1:133:0,133:0:0:133:4731:-425.929,-40.037,0	1/1:163:0,163:0:0:163:5847:-526.331,-49.0679,0	1/1:143:1,142:1:36:142:5091:-454.707,-39.449,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:135:0,135:0:0:135:4839:-435.555,-40.6391,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:124:30,94:30:1061:94:3367:-265.828,0,-58.4716	0/1:59:17,42:17:608:42:1508:-118.254,0,-37.2913	0/1:140:41,99:41:1444:99:3516:-274.506,0,-88.1117	1/1:170:0,170:0:0:170:6112:-550.177,-51.1751,0	0/1:79:12,67:12:420:67:2400:-192.475,0,-14.3527	1/1:127:0,127:0:0:127:4528:-407.688,-38.2308,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:167:84,83:84:2984:83:2974:-217.602,0,-218.522	0/1:85:30,55:30:1060:55:1943:-149.554,0,-70.1237	0/1:231:71,160:71:2511:160:5715:-444.816,0,-156.704	0/1:57:32,25:32:1104:25:891:-63.3501,0,-82.5049	0/1:27:11,16:11:392:16:576:-44.0472,0,-27.4922	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:67:32,35:32:1140:35:1252:-92.8161,0,-82.7402	0/1:32:15,17:15:523:17:612:-45.7805,0,-37.7655	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:36:19,17:19:659:17:600:-43.4921,0,-48.7952	0/1:21:13,8:13:460:8:288:-19.9458,0,-35.4137	1/1:138:0,138:0:0:138:4928:-443.661,-41.5421,0	1/1:49:1,48:1:36:48:1724:-151.943,-11.2478,0
chr01	12120538	.	C	T	124298	PASS	AB=0.587992;ABP=182.237;AC=154;AF=0.819149;AN=188;AO=6061;CIGAR=1X;DP=7163;DPB=7163;DPRA=0;EPP=13164.3;EPPR=2387.29;GTI=2;LEN=1;MEANALT=1.03191;MQM=40.3293;MQMR=59.9399;NS=94;NUMALT=1;ODDS=5.43595;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=217220;QR=39195;RO=1098;RPL=0;RPP=13164.3;RPPR=2387.29;RPR=6061;RUN=1;SAF=0;SAP=13164.3;SAR=6061;SRF=0;SRP=2387.29;SRR=1098;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1512:-128.45,-12.6433,0	0/1:81:31,50:31:1099:50:1792:-128.054,0,-74.836	1/1:94:0,94:0:0:94:3376:-286.416,-28.2968,0	1/1:125:0,125:0:0:125:4475:-388.981,-37.6288,0	1/1:41:0,41:0:0:41:1468:-125.663,-12.3422,0	1/1:52:0,52:0:0:52:1868:-158.812,-15.6536,0	0/1:88:36,52:36:1292:52:1872:-137.008,0,-90.0931	1/1:138:0,138:0:0:138:4941:-419.451,-41.5421,0	1/1:81:0,81:0:0:81:2904:-246.557,-24.3834,0	1/1:73:0,73:0:0:73:2628:-227.951,-21.9752,0	1/1:31:0,31:0:0:31:1116:-97.3118,-9.33193,0	1/1:36:0,36:0:0:36:1292:-109.84,-10.8371,0	0/1:36:14,22:14:500:22:792:-56.5762,0,-34.4991	1/1:63:0,63:0:0:63:2252:-195.123,-18.9649,0	0/1:44:15,29:15:536:29:1044:-78.6117,0,-35.3295	1/1:26:0,26:0:0:26:932:-80.6753,-7.82678,0	1/1:45:0,45:0:0:45:1597:-136.006,-13.5464,0	0/1:18:13,4:13:468:4:144:-7.25485,0,-36.9823	0/1:31:10,21:10:360:21:752:-54.7747,0,-23.4124	0/1:100:37,63:37:1324:63:2260:-168.186,0,-89.3587	0/1:117:58,59:58:2045:59:2104:-146.845,0,-149.1	0/1:48:33,15:33:1184:15:540:-32.2164,0,-92.4143	1/1:73:0,73:0:0:73:2620:-228.015,-21.9752,0	0/1:68:8,60:8:288:60:2144:-164.049,0,-5.79737	1/1:49:0,49:0:0:49:1756:-150.848,-14.7505,0	0/1:237:110,127:110:3948:127:4557:-325.626,0,-284.162	1/1:205:0,205:0:0:205:7355:-634.556,-61.7112,0	1/1:26:0,26:0:0:26:932:-80.8527,-7.82678,0	0/1:177:56,121:56:1985:121:4314:-322.51,0,-125.631	1/1:184:1,183:1:36:183:6571:-556.091,-51.7912,0	1/1:156:0,156:0:0:156:5599:-487.221,-46.9607,0	1/1:6:0,6:0:0:6:216:-18.9997,-1.80618,0	1/1:19:0,19:0:0:19:680:-59.1291,-5.71957,0	0/1:5:1,4:1:36:4:144:-11.029,0,-2.09312	1/1:11:0,11:0:0:11:396:-33.876,-3.31133,0	1/1:12:0,12:0:0:12:428:-36.6661,-3.61236,0	0/1:95:46,49:46:1639:49:1756:-124.709,0,-119.195	1/1:176:0,176:0:0:176:6287:-540.358,-52.9813,0	0/1:40:16,24:16:563:24:864:-61.4697,0,-38.958	0/1:6:3,3:3:108:3:108:-7.86639,0,-8.26899	0/1:112:40,72:40:1436:72:2580:-189.5,0,-95.8223	1/1:21:0,21:0:0:21:748:-64.6306,-6.32163,0	1/1:117:0,117:0:0:117:4196:-361.44,-35.2205,0	1/1:38:0,38:0:0:38:1355:-118.403,-11.4391,0	1/1:40:0,40:0:0:40:1428:-125.429,-12.0412,0	1/1:104:0,104:0:0:104:3728:-324.296,-31.3071,0	1/1:123:0,123:0:0:123:4416:-374.766,-37.0267,0	0/1:135:38,97:38:1356:97:3465:-261.162,0,-81.7014	0/1:97:39,58:39:1392:58:2080:-151.787,0,-96.3791	0/1:89:33,56:33:1184:56:1999:-147.78,0,-80.0766	1/1:156:0,156:0:0:156:5589:-486.235,-46.9607,0	1/1:15:0,15:0:0:15:540:-47.6367,-4.51545,0	1/1:169:0,169:0:0:169:6029:-511.854,-50.8741,0	1/1:31:0,31:0:0:31:1116:-97.6045,-9.33193,0	1/1:40:0,40:0:0:40:1436:-122.177,-12.0412,0	1/1:139:0,139:0:0:139:4988:-427.769,-41.8432,0	1/1:50:0,50:0:0:50:1792:-156.233,-15.0515,0	1/1:17:0,17:0:0:17:612:-53.6027,-5.11751,0	0/1:21:8,13:8:279:13:468:-34.7268,0,-19.1259	1/1:52:0,52:0:0:52:1863:-159.654,-15.6536,0	1/1:93:1,92:1:36:92:3296:-284.681,-24.3975,0	1/1:23:0,23:0:0:23:824:-72.545,-6.92369,0	1/1:183:0,183:0:0:183:6572:-571.897,-55.0885,0	1/1:189:0,189:0:0:189:6754:-590.286,-56.8947,0	1/1:50:0,50:0:0:50:1800:-155.798,-15.0515,0	1/1:80:0,80:0:0:80:2864:-249.474,-24.0824,0	1/1:154:2,152:2:72:152:5433:-466.158,-39.5219,0	1/1:83:0,83:0:0:83:2976:-260.213,-24.9855,0	1/1:14:0,14:0:0:14:504:-43.872,-4.21442,0	1/1:75:0,75:0:0:75:2688:-228.482,-22.5773,0	1/1:59:0,59:0:0:59:2120:-184.143,-17.7608,0	1/1:49:0,49:0:0:49:1756:-154.285,-14.7505,0	0/1:85:51,33:51:1803:33:1188:-75.3923,0,-136.993	0/1:43:23,20:23:820:20:720:-48.3713,0,-61.1782	0/1:125:32,93:32:1148:93:3327:-249.51,0,-65.9727	1/1:179:0,179:0:0:179:6420:-561.871,-53.8844,0	0/1:75:31,44:31:1116:44:1584:-112.101,0,-78.1744	1/1:92:0,92:0:0:92:3296:-280.055,-27.6948,0	1/1:13:0,13:0:0:13:468:-39.6714,-3.91339,0	0/1:92:23,69:23:824:69:2457:-184.937,0,-46.7886	0/1:59:26,33:26:916:33:1188:-83.1897,0,-64.9957	0/1:235:98,135:98:3505:135:4848:-354.141,0,-245.15	0/1:71:31,40:31:1093:40:1436:-103.871,0,-77.3045	0/1:31:12,19:12:432:19:684:-50.4741,0,-29.8893	1/1:49:0,49:0:0:49:1760:-154.084,-14.7505,0	0/1:56:31,25:31:1108:25:892:-61.6812,0,-83.1617	0/1:23:13,10:13:468:10:360:-23.9035,0,-35.536	1/1:50:0,50:0:0:50:1800:-152.841,-15.0515,0	1/1:48:0,48:0:0:48:1728:-147.063,-14.4494,0	1/1:24:0,24:0:0:24:864:-73.1161,-7.22472,0	0/1:88:54,34:54:1932:34:1224:-79.6783,0,-147.666	0/1:37:24,13:24:864:13:445:-26.3364,0,-66.9445	1/1:67:0,67:0:0:67:2404:-210.107,-20.169,0	1/1:48:0,48:0:0:48:1724:-151.443,-14.4494,0
chr01	12120569	.	G	A	122223	PASS	AB=0.580827;ABP=153.952;AC=154;AF=0.819149;AN=188;AO=5978;CIGAR=1X;DP=7098;DPB=7098;DPRA=0;EPP=12984.1;EPPR=2430.72;GTI=2;LEN=1;MEANALT=1.02128;MQM=40.2588;MQMR=59.9383;NS=94;NUMALT=1;ODDS=4.34386;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213947;QR=39962;RO=1118;RPL=5978;RPP=12984.1;RPPR=2430.72;RPR=0;RUN=1;SAF=0;SAP=12984.1;SAR=5978;SRF=0;SRP=2430.72;SRR=1118;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1495:-127.286,-12.6433,0	0/1:81:32,49:32:1143:49:1760:-125.244,0,-78.7953	1/1:93:0,93:0:0:93:3332:-282.854,-27.9958,0	1/1:124:0,124:0:0:124:4432:-385.145,-37.3277,0	1/1:41:0,41:0:0:41:1472:-125.92,-12.3422,0	1/1:52:0,52:0:0:52:1844:-156.992,-15.6536,0	0/1:90:38,52:38:1352:52:1868:-136.118,0,-94.8877	1/1:134:0,134:0:0:134:4785:-406.193,-40.338,0	1/1:78:0,78:0:0:78:2800:-237.635,-23.4803,0	1/1:71:0,71:0:0:71:2548:-221.069,-21.3731,0	1/1:32:0,32:0:0:32:1148:-100.154,-9.63296,0	1/1:35:0,35:0:0:35:1256:-106.791,-10.5361,0	0/1:37:15,22:15:540:22:784:-55.7598,0,-37.7984	1/1:62:0,62:0:0:62:2181:-189.192,-18.6639,0	0/1:43:14,29:14:504:29:1044:-78.8264,0,-32.7538	1/1:25:0,25:0:0:25:900:-77.8302,-7.52575,0	1/1:41:0,41:0:0:41:1467:-124.653,-12.3422,0	0/1:17:14,3:14:504:3:108:-4.36777,0,-40.5802	0/1:31:10,21:10:360:21:756:-55.0325,0,-23.4124	0/1:97:37,60:37:1328:60:2156:-159.855,0,-90.6222	0/1:119:61,58:61:2175:58:2080:-144.025,0,-160.193	0/1:47:33,14:33:1168:14:496:-29.0217,0,-91.2742	1/1:69:0,69:0:0:69:2457:-214.508,-20.7711,0	0/1:68:8,60:8:288:60:2144:-163.674,0,-5.79737	1/1:48:1,47:1:36:47:1680:-140.572,-10.8529,0	0/1:236:111,125:111:3988:125:4484:-319.489,0,-288.061	1/1:206:0,206:0:0:206:7383:-637.062,-62.0122,0	1/1:26:0,26:0:0:26:936:-81.1636,-7.82678,0	0/1:181:58,122:58:2080:122:4338:-323.251,0,-132.916	1/1:188:1,187:1:36:187:6665:-564.875,-52.9954,0	1/1:152:0,152:0:0:152:5441:-473.067,-45.7566,0	1/1:6:0,6:0:0:6:212:-18.7079,-1.80618,0	1/1:19:0,19:0:0:19:684:-59.4172,-5.71957,0	0/1:5:1,4:1:36:4:144:-11.029,0,-2.09312	1/1:11:0,11:0:0:11:392:-33.617,-3.31133,0	1/1:11:0,11:0:0:11:396:-33.876,-3.31133,0	0/1:96:47,49:47:1684:49:1741:-123.159,0,-122.944	1/1:171:0,171:0:0:171:6148:-526.29,-51.4761,0	0/1:40:16,24:16:572:24:864:-61.4697,0,-39.7722	0/1:6:3,3:3:108:3:108:-7.86639,0,-8.26899	0/1:112:39,73:39:1396:73:2612:-192.451,0,-92.2237	1/1:21:0,21:0:0:21:752:-64.9187,-6.32163,0	1/1:116:0,116:0:0:116:4160:-357.597,-34.9195,0	1/1:38:0,38:0:0:38:1364:-119.14,-11.4391,0	1/1:39:0,39:0:0:39:1396:-122.587,-11.7402,0	1/1:102:0,102:0:0:102:3644:-317.093,-30.7051,0	1/1:121:0,121:0:0:121:4310:-365.887,-36.4246,0	0/1:132:38,94:38:1364:94:3364:-253.324,0,-83.3248	0/1:95:38,57:38:1348:57:2044:-149.884,0,-93.0224	0/1:88:35,53:35:1252:53:1889:-138.625,0,-86.4944	1/1:155:0,155:0:0:155:5564:-484.051,-46.6597,0	1/1:15:0,15:0:0:15:540:-47.6367,-4.51545,0	1/1:166:0,166:0:0:166:5945:-504.624,-49.971,0	1/1:29:0,29:0:0:29:1044:-91.3393,-8.72987,0	1/1:39:0,39:0:0:39:1400:-118.938,-11.7402,0	1/1:138:0,138:0:0:138:4925:-422.445,-41.5421,0	1/1:49:0,49:0:0:49:1756:-153.081,-14.7505,0	1/1:17:0,17:0:0:17:608:-53.3018,-5.11751,0	0/1:21:8,13:8:288:13:468:-34.7268,0,-19.9458	1/1:50:0,50:0:0:50:1792:-153.441,-15.0515,0	1/1:93:1,92:1:36:92:3304:-285.081,-24.3975,0	1/1:23:0,23:0:0:23:828:-72.8561,-6.92369,0	1/1:180:0,180:0:0:180:6472:-563.098,-54.1854,0	1/1:190:0,190:0:0:190:6808:-594.818,-57.1957,0	1/1:51:0,51:0:0:51:1815:-157.346,-15.3525,0	1/1:81:0,81:0:0:81:2874:-250.512,-24.3834,0	1/1:153:2,151:2:72:151:5416:-465.763,-39.2209,0	1/1:84:0,84:0:0:84:3009:-263.006,-25.2865,0	1/1:13:0,13:0:0:13:468:-40.763,-3.91339,0	1/1:75:0,75:0:0:75:2665:-226.8,-22.5773,0	1/1:57:0,57:0:0:57:2052:-178.177,-17.1587,0	1/1:48:0,48:0:0:48:1720:-151.046,-14.4494,0	0/1:87:54,33:54:1931:33:1188:-74.7609,0,-147.848	0/1:43:24,19:24:852:19:684:-45.3224,0,-64.0561	0/1:118:31,87:31:1103:87:3114:-232.995,0,-64.0583	1/1:176:0,176:0:0:176:6297:-551.116,-52.9813,0	0/1:75:33,42:33:1179:42:1508:-105.556,0,-83.84	1/1:92:0,92:0:0:92:3297:-279.914,-27.6948,0	1/1:13:0,13:0:0:13:464:-39.4128,-3.91339,0	0/1:93:23,70:23:828:70:2470:-185.915,0,-46.8483	0/1:58:25,33:25:891:33:1184:-83.2335,0,-63.049	0/1:237:100,136:100:3558:136:4869:-355.23,0,-249.018	0/1:71:31,40:31:1108:40:1432:-103.56,0,-78.6579	0/1:31:12,19:12:432:19:680:-50.1627,0,-29.8893	1/1:47:0,47:0:0:47:1692:-148.089,-14.1484,0	0/1:56:31,25:31:1108:25:896:-61.9923,0,-83.1617	0/1:23:13,10:13:451:10:360:-23.9035,0,-33.9961	1/1:49:0,49:0:0:49:1752:-148.991,-14.7505,0	1/1:45:0,45:0:0:45:1616:-137.47,-13.5464,0	1/1:24:0,24:0:0:24:860:-72.8282,-7.22472,0	0/1:90:56,34:56:2003:34:1224:-79.0762,0,-153.45	0/1:36:24,12:24:860:12:432:-25.3611,0,-66.8848	1/1:65:0,65:0:0:65:2324:-203.182,-19.567,0	1/1:47:0,47:0:0:47:1667:-146.537,-14.1484,0
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chr01	12330689	.	T	C	119470	PASS	AB=0.553686;ABP=72.9575;AC=153;AF=0.822581;AN=186;AO=5612;CIGAR=1X;DP=6868;DPB=6868;DPRA=0;EPP=12180.6;EPPR=2719.52;GTI=0;LEN=1;MEANALT=1.05376;MQM=54.3229;MQMR=59.9257;NS=93;NUMALT=1;ODDS=4.41905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199386;QR=44268;RO=1251;RPL=1;RPP=12180.6;RPPR=2719.52;RPR=5611;RUN=1;SAF=0;SAP=12189.3;SAR=5612;SRF=0;SRP=2719.52;SRR=1251;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:856:-76.9923,-7.22472,0	0/1:78:38,39:38:1356:39:1400:-102.448,0,-98.7981	1/1:100:0,100:0:0:100:3500:-313.956,-30.103,0	1/1:188:0,188:0:0:188:6650:-597.776,-56.5936,0	1/1:77:1,76:1:36:76:2697:-238.637,-19.581,0	1/1:38:0,38:0:0:38:1353:-121.379,-11.4391,0	0/1:85:32,53:32:1132:53:1876:-143.198,0,-76.601	1/1:84:2,82:2:72:82:2912:-253.902,-18.4498,0	1/1:58:0,58:0:0:58:2063:-184.181,-17.4597,0	1/1:60:0,60:0:0:60:2125:-191.054,-18.0618,0	1/1:28:0,28:0:0:28:1000:-90.2525,-8.42884,0	1/1:36:0,36:0:0:36:1271:-114.326,-10.8371,0	0/1:41:20,21:20:708:21:740:-54.4325,0,-51.6952	1/1:29:0,29:0:0:29:1036:-93.3005,-8.72987,0	0/1:35:18,17:18:644:17:612:-44.669,0,-47.7545	1/1:41:0,41:0:0:41:1466:-131.972,-12.3422,0	1/1:47:0,47:0:0:47:1667:-149.866,-14.1484,0	0/1:27:9,18:9:311:18:648:-50.371,0,-20.1959	0/1:15:11,4:11:379:4:144:-8.7647,0,-29.9251	0/1:174:73,101:73:2583:101:3600:-271.276,0,-180.341	0/1:104:35,69:35:1248:69:2480:-191.211,0,-81.3177	0/1:133:88,45:88:3100:45:1588:-103.017,0,-239.192	1/1:136:0,136:0:0:136:4857:-436.27,-40.9401,0	0/1:55:10,45:10:339:45:1592:-126.619,0,-14.2809	1/1:57:0,57:0:0:57:2035:-183.035,-17.1587,0	0/1:265:106,159:106:3748:159:5645:-427.717,0,-257.749	1/1:160:0,160:0:0:160:5705:-512.267,-48.1648,0	1/1:19:0,19:0:0:19:684:-61.8026,-5.71957,0	0/1:227:113,114:113:4024:114:4086:-299.279,0,-294.014	1/1:97:0,97:0:0:97:3462:-311.113,-29.1999,0	1/1:119:0,119:0:0:119:4226:-379.66,-35.8226,0	1/1:4:0,4:0:0:4:140:-12.9211,-1.20412,0	1/1:11:0,10:0:0:10:356:-31.9694,-3.0103,0	0/1:3:2,1:2:72:1:36:-2.68614,0,-5.93363	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	1/1:4:0,4:0:0:4:140:-12.9161,-1.20412,0	0/1:123:60,63:60:2118:63:2252:-165.75,0,-153.861	1/1:155:0,155:0:0:155:5482:-491.774,-46.6597,0	0/1:35:23,12:23:824:12:427:-28.0282,0,-63.944	.:.:.:.:.:.:.:.	0/1:120:47,73:47:1688:73:2601:-197.74,0,-116.083	1/1:20:0,20:0:0:20:720:-64.7201,-6.0206,0	1/1:114:0,114:0:0:114:4031:-361.576,-34.3174,0	1/1:34:0,34:0:0:34:1207:-108.865,-10.235,0	1/1:56:0,56:0:0:56:1954:-175.52,-16.8577,0	1/1:70:0,70:0:0:70:2472:-222.115,-21.0721,0	1/1:110:0,110:0:0:110:3914:-350.307,-33.1133,0	0/1:145:68,77:68:2403:77:2713:-200.331,0,-172.878	0/1:76:29,47:29:1028:47:1662:-126.629,0,-69.9548	0/1:101:41,60:41:1445:60:2150:-162.934,0,-99.9398	1/1:144:0,144:0:0:144:5086:-457.488,-43.3483,0	1/1:8:0,8:0:0:8:288:-26.2516,-2.40824,0	1/1:93:0,92:0:0:92:3287:-294.015,-27.6948,0	1/1:42:0,42:0:0:42:1506:-135.548,-12.6433,0	1/1:19:0,19:0:0:19:665:-59.8345,-5.71957,0	1/1:133:0,132:0:0:132:4698:-419.942,-39.736,0	1/1:47:0,47:0:0:47:1684:-151.484,-14.1484,0	1/1:8:0,8:0:0:8:288:-26.2601,-2.40824,0	0/1:14:5,9:5:180:9:302:-23.2803,0,-12.3376	1/1:63:0,63:0:0:63:2247:-201.951,-18.9649,0	1/1:80:0,80:0:0:80:2827:-254.413,-24.0824,0	1/1:3:0,3:0:0:3:108:-9.98112,-0.90309,0	1/1:149:0,149:0:0:149:5284:-475.261,-44.8535,0	1/1:169:0,169:0:0:169:6051:-543.58,-50.8741,0	1/1:45:0,45:0:0:45:1589:-142.673,-13.5464,0	1/1:104:0,104:0:0:104:3719:-334.501,-31.3071,0	1/1:155:0,155:0:0:155:5519:-496.006,-46.6597,0	1/1:124:0,124:0:0:124:4421:-397.257,-37.3277,0	1/1:7:0,7:0:0:7:252:-22.9927,-2.10721,0	1/1:50:0,50:0:0:50:1792:-161.164,-15.0515,0	1/1:58:0,58:0:0:58:2049:-184.521,-17.4597,0	1/1:8:0,8:0:0:8:288:-26.2485,-2.40824,0	0/1:86:31,55:31:1092:55:1971:-150.446,0,-72.701	0/1:35:12,23:12:420:23:811:-62.5971,0,-27.598	0/1:101:38,63:38:1323:63:2238:-170.87,0,-88.9031	1/1:165:0,165:0:0:165:5868:-527.511,-49.67,0	0/1:65:24,41:24:864:41:1457:-110.62,0,-58.5156	1/1:73:1,72:1:36:72:2575:-226.47,-18.3769,0	1/1:8:0,8:0:0:8:284:-25.8423,-2.40824,0	0/1:93:42,51:42:1477:51:1796:-133.582,0,-105.227	0/1:80:50,30:50:1752:30:1071:-72.3525,0,-133.879	0/1:170:76,93:76:2683:93:3295:-244.642,0,-190.481	0/1:83:36,47:36:1279:47:1653:-123.867,0,-90.427	0/1:38:16,22:16:557:22:761:-57.3209,0,-39.0164	1/1:56:0,56:0:0:56:1966:-177.104,-16.8577,0	0/1:77:37,40:37:1315:40:1404:-103.303,0,-95.4433	0/1:28:17,11:17:604:11:387:-26.6482,0,-46.2618	1/1:44:0,44:0:0:44:1571:-140.998,-13.2453,0	1/1:47:0,47:0:0:47:1658:-148.064,-14.1484,0	1/1:26:2,24:2:72:24:856:-70.4205,-0.990058,0	0/1:47:21,26:21:748:26:919:-68.7512,0,-53.4969	0/1:35:17,18:17:608:18:640:-46.9998,0,-44.4294	1/1:105:0,105:0:0:105:3714:-333.773,-31.6082,0	1/1:62:0,62:0:0:62:2200:-197.886,-18.6639,0
chr01	12330741	.	G	A	121236	PASS	AB=0.551603;ABP=68.6738;AC=153;AF=0.822581;AN=186;AO=5636;CIGAR=1X;DP=6914;DPB=6914;DPRA=0;EPP=12241.4;EPPR=2773.81;GTI=0;LEN=1;MEANALT=1.02151;MQM=54.2124;MQMR=59.8864;NS=93;NUMALT=1;ODDS=3.77039;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201887;QR=45735;RO=1276;RPL=5636;RPP=12241.4;RPPR=2773.81;RPR=0;RUN=1;SAF=0;SAP=12241.4;SAR=5636;SRF=0;SRP=2773.81;SRR=1276;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:949:-85.5124,-8.12781,0	0/1:77:38,39:38:1356:39:1400:-102.758,0,-99.1612	1/1:99:0,99:0:0:99:3532:-315.86,-29.802,0	1/1:186:0,186:0:0:186:6672:-599.435,-55.9916,0	1/1:76:1,75:1:36:75:2692:-238.079,-19.28,0	1/1:38:0,38:0:0:38:1368:-122.326,-11.4391,0	0/1:86:33,53:33:1188:53:1904:-145.332,0,-80.7119	1/1:85:0,85:0:0:85:3037:-271.924,-25.5876,0	1/1:58:0,58:0:0:58:2080:-186.623,-17.4597,0	1/1:61:0,61:0:0:61:2196:-197.381,-18.3628,0	1/1:29:0,29:0:0:29:1040:-93.8455,-8.72987,0	1/1:35:0,35:0:0:35:1247:-112.22,-10.5361,0	0/1:42:22,20:22:792:20:720:-52.3106,0,-58.898	1/1:29:0,29:0:0:29:1040:-93.6546,-8.72987,0	0/1:35:18,17:18:644:17:612:-44.669,0,-47.7545	1/1:41:0,41:0:0:41:1476:-132.819,-12.3422,0	1/1:45:0,45:0:0:45:1620:-145.528,-13.5464,0	0/1:27:9,18:9:324:18:644:-50.0146,0,-21.378	0/1:16:11,5:11:396:5:180:-11.694,0,-31.1663	0/1:177:73,104:73:2620:104:3736:-282.549,0,-182.765	0/1:105:37,68:37:1328:68:2448:-188.028,0,-88.2141	0/1:136:91,45:91:3264:45:1620:-104.509,0,-253.039	1/1:136:0,136:0:0:136:4857:-436.116,-40.9401,0	0/1:58:10,48:10:352:48:1712:-136.355,0,-14.5585	1/1:56:0,56:0:0:56:2008:-180.607,-16.8577,0	0/1:271:113,158:113:4048:158:5668:-427.878,0,-282.928	1/1:159:0,158:0:0:158:5680:-509.132,-47.5627,0	1/1:20:0,20:0:0:20:701:-63.3219,-6.0206,0	0/1:233:115,118:115:4113:118:4224:-309.876,0,-300.213	1/1:101:0,101:0:0:101:3616:-323.963,-30.404,0	1/1:117:0,117:0:0:117:4185:-375.91,-35.2205,0	1/1:4:0,4:0:0:4:144:-13.2765,-1.20412,0	1/1:11:0,11:0:0:11:392:-35.5626,-3.31133,0	0/1:3:2,1:2:72:1:36:-2.68614,0,-5.93363	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	0/1:122:60,62:60:2148:62:2220:-163.169,0,-156.862	1/1:157:0,157:0:0:157:5628:-504.123,-47.2617,0	0/1:34:22,12:22:792:12:428:-28.2609,0,-61.3707	.:.:.:.:.:.:.:.	0/1:121:49,72:49:1756:72:2588:-196.265,0,-121.899	1/1:21:0,21:0:0:21:756:-67.954,-6.32163,0	1/1:116:0,116:0:0:116:4156:-371.556,-34.9195,0	1/1:32:0,32:0:0:32:1148:-103.557,-9.63296,0	1/1:55:0,55:0:0:55:1960:-175.927,-16.5567,0	1/1:75:0,75:0:0:75:2684:-241.121,-22.5773,0	1/1:109:0,109:0:0:109:3900:-349.098,-32.8123,0	0/1:148:68,80:68:2436:80:2849:-211.435,0,-174.943	0/1:77:30,47:30:1080:47:1684:-128.079,0,-74.3339	0/1:100:41,59:41:1461:59:2116:-160.045,0,-101.681	1/1:150:0,150:0:0:150:5380:-483.831,-45.1545,0	1/1:8:0,8:0:0:8:288:-26.2493,-2.40824,0	1/1:94:0,94:0:0:94:3368:-301.204,-28.2968,0	1/1:42:0,42:0:0:42:1493:-134.081,-12.6433,0	1/1:19:0,19:0:0:19:684:-61.3641,-5.71957,0	1/1:124:0,124:0:0:124:4436:-397.884,-37.3277,0	1/1:47:0,47:0:0:47:1688:-151.76,-14.1484,0	1/1:8:0,8:0:0:8:288:-26.2601,-2.40824,0	0/1:13:4,9:4:144:9:309:-24.1642,0,-9.40023	1/1:63:0,63:0:0:63:2268:-203.826,-18.9649,0	1/1:77:0,77:0:0:77:2749:-247.386,-23.1793,0	1/1:4:0,4:0:0:4:140:-12.8137,-1.20412,0	1/1:146:0,146:0:0:146:5236:-470.89,-43.9504,0	1/1:169:0,169:0:0:169:6029:-541.584,-50.8741,0	1/1:46:0,46:0:0:46:1633:-146.498,-13.8474,0	1/1:103:0,103:0:0:103:3708:-333.456,-31.0061,0	1/1:157:0,157:0:0:157:5632:-506.002,-47.2617,0	1/1:124:0,124:0:0:124:4440:-398.907,-37.3277,0	1/1:6:0,6:0:0:6:216:-19.7588,-1.80618,0	1/1:50:0,50:0:0:50:1800:-161.874,-15.0515,0	1/1:59:0,59:0:0:59:2101:-189.193,-17.7608,0	1/1:9:0,9:0:0:9:324:-29.4846,-2.70927,0	0/1:89:31,58:31:1116:58:2084:-159.437,0,-73.96	0/1:34:12,22:12:428:22:788:-60.8291,0,-28.6238	0/1:106:40,66:40:1432:66:2372:-180.107,0,-97.134	1/1:161:0,161:0:0:161:5742:-516.064,-48.4658,0	0/1:67:25,42:25:892:42:1512:-114.765,0,-60.4307	1/1:73:1,72:1:36:72:2561:-225.229,-18.3769,0	1/1:8:0,8:0:0:8:288:-26.2014,-2.40824,0	0/1:91:40,50:40:1436:50:1792:-133.65,0,-102.085	0/1:82:51,31:51:1832:31:1112:-75.2764,0,-140.476	0/1:176:78,98:78:2785:98:3516:-262.497,0,-197.906	0/1:83:36,47:36:1296:47:1669:-125.235,0,-91.9584	0/1:36:14,22:14:500:22:788:-60.3291,0,-34.4991	1/1:56:0,56:0:0:56:2000:-180.147,-16.8577,0	0/1:78:37,41:37:1332:41:1476:-108.698,0,-96.6736	0/1:29:18,11:18:644:11:396:-27.1568,0,-49.5044	1/1:47:0,47:0:0:47:1692:-151.666,-14.1484,0	1/1:45:0,45:0:0:45:1620:-144.573,-13.5464,0	1/1:26:2,24:2:72:24:864:-71.1364,-0.990058,0	0/1:50:22,28:22:792:28:1000:-75.1268,0,-56.546	0/1:37:22,15:22:792:15:536:-37.0437,0,-60.3811	1/1:108:0,108:0:0:108:3872:-347.839,-32.5112,0	1/1:61:0,61:0:0:61:2192:-197.01,-18.3628,0
chr01	12572846	.	A	G	22373.6	PASS	AB=0.48225;ABP=10.7963;AC=32;AF=0.172043;AN=186;AO=1388;CIGAR=1X;DP=7424;DPB=7424;DPRA=1.43429;EPP=3017.01;EPPR=13094.8;GTI=0;LEN=1;MEANALT=1.12195;MQM=59.9899;MQMR=59.9852;NS=93;NUMALT=1;ODDS=0.475156;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49214;QR=215727;RO=6029;RPL=1388;RPP=3017.01;RPPR=13094.8;RPR=0;RUN=1;SAF=0;SAP=3017.01;SAR=1388;SRF=0;SRP=13094.8;SRR=6029;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:87:86,0:86:3072:0:0:0,-25.8886,-276.389	0/1:42:20,22:20:720:22:784:-58.2407,0,-52.4855	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	0/0:142:142,0:142:5088:0:0:0,-42.7463,-458.055	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/1:115:65,50:65:2317:50:1776:-125.505,0,-174.17	0/0:127:127,0:127:4524:0:0:0,-38.2308,-407.327	0/0:152:151,1:151:5377:1:36:0,-42.1583,-480.457	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:92:92,0:92:3295:0:0:0,-27.6948,-295.832	0/1:72:34,38:34:1220:38:1342:-99.4044,0,-88.4326	0/0:52:51,1:51:1814:1:36:0,-12.0553,-159.942	0/1:55:28,27:28:1000:27:956:-69.7991,0,-73.6288	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:39:38,1:38:1364:1:36:0,-8.14189,-119.462	0/1:32:16,16:16:576:16:559:-41.0046,0,-42.542	0/1:24:14,10:14:500:10:356:-25.1565,0,-38.1115	0/1:123:65,58:65:2328:58:2054:-148.105,0,-172.753	0/1:104:54,49:54:1940:49:1730:-124.616,0,-143.51	0/1:87:41,46:41:1464:46:1648:-122.419,0,-105.866	0/0:129:129,0:129:4609:0:0:0,-38.8329,-414.973	0/0:93:86,7:86:3088:7:248:0,-5.33159,-255.483	0/0:153:153,0:153:5488:0:0:0,-46.0576,-494.046	0/1:191:99,91:99:3540:91:3214:-231.927,0,-261.254	0/0:185:184,1:184:6568:1:36:0,-52.0923,-587.606	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:174:81,93:81:2888:93:3295:-244.392,0,-207.778	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:10:3,7:3:108:7:244:-19.2891,0,-7.06487	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:156:94,62:94:3367:62:2210:-152.204,0,-256.285	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.14	0/1:51:25,26:25:900:26:928:-68.4857,0,-65.9685	.:.:.:.:.:.:.:.	0/1:45:21,24:21:744:24:839:-62.2809,0,-53.738	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:186:186,0:186:6672:0:0:0,-55.9916,-600.555	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:55:55,0:55:1937:0:0:0,-16.5566,-174.604	0/0:152:152,0:152:5448:0:0:0,-45.7566,-490.448	0/0:122:121,1:121:4336:1:36:0,-33.1274,-386.817	0/1:110:56,54:56:2012:54:1932:-141.043,0,-148.24	0/1:122:80,42:80:2856:42:1484:-97.1288,0,-220.55	0/1:67:31,36:31:1101:36:1279:-95.2434,0,-79.2294	0/0:165:165,0:165:5903:0:0:0,-49.6699,-531.379	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/0:107:106,1:106:3784:1:36:0,-28.6119,-337.161	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.217	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:129:129,0:129:4624:0:0:0,-38.8329,-416.323	0/0:203:202,1:202:7240:1:32:0,-57.9098,-648.453	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.822	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.427	0/0:142:139,2:139:4964:2:72:0,-35.9683,-440.056	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:127:60,66:60:2148:66:2352:-173.689,0,-155.337	0/1:78:47,31:47:1676:31:1104:-76.1903,0,-127.647	0/1:165:75,90:75:2692:90:3216:-239.993,0,-192.854	0/0:96:95,0:95:3404:0:0:0,-28.5978,-306.215	0/1:100:46,54:46:1648:54:1920:-142.974,0,-118.506	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:39:16,23:16:576:23:807:-61.2089,0,-40.4348	0/1:71:38,33:38:1364:33:1149:-82.3408,0,-101.688	0/1:214:113,100:113:4048:100:3555:-255.681,0,-300.026	0/1:76:52,24:52:1860:24:830:-52.1366,0,-144.801	0/1:69:35,34:35:1256:34:1203:-87.804,0,-92.5742	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:117:67,50:67:2386:50:1770:-124.361,0,-179.776	0/1:16:10,6:10:360:6:212:-14.6083,0,-27.9278	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/1:115:53,62:53:1900:62:2207:-164.276,0,-136.659	0/1:55:19,36:19:671:36:1263:-97.4151,0,-44.1591	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:108:108,0:108:3863:0:0:0,-32.5112,-347.865
chr01	12587927	.	TTAAA	GTAAG,TTAAG	210841	PASS	AB=0.505974,0.496936;ABP=3.52917,3.14336;AC=174,13;AF=0.925532,0.0691489;AN=188;AO=8830,837;CIGAR=1X3M1X,4M1X;DP=9721;DPB=9731;DPRA=0,1.59164;EPP=19177.1,1820.53;EPPR=79.0118;GTI=2;LEN=5,1;MEANALT=1.45745,2.36;MQM=59.5157,59.2318;MQMR=47.4857;NS=94;NUMALT=2;ODDS=1.89919;PAIRED=0,0;PAIREDR=0;PAO=31.5,10;PQA=1109,266;PQR=106;PRO=5.5;QA=309057,29515;QR=1236;RO=35;RPL=1,0;RPP=19168.4,1820.53;RPPR=79.0118;RPR=8829,837;RUN=1,1;SAF=1,0;SAP=19168.4,1820.53;SAR=8829,837;SRF=0;SRP=79.0118;SRR=35;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:78:0,78,0:0:0:78,0:2714,0:-244.491,-23.4803,0,-244.491,-23.4803,-244.491	1/1:63:0,62,0:0:0:62,0:2158,0:-194.123,-18.6639,0,-194.123,-18.6639,-194.123	1/1:176:0,176,0:0:0:176,0:6135,0:-552.206,-52.9813,0,-552.206,-52.9813,-552.206	1/1:280:0,279,0:0:0:279,0:9760,0:-877.891,-83.9874,0,-877.891,-83.9874,-877.891	1/1:89:1,86,0:1:31:86,0:3042,0:-270.902,-23.4551,0,-271.203,-25.8886,-273.645	1/1:9:0,9,0:0:0:9,0:314,0:-28.5972,-2.70927,0,-28.5972,-2.70927,-28.5972	1/1:73:0,73,0:0:0:73,0:2575,0:-231.992,-21.9752,0,-231.992,-21.9752,-231.992	1/1:231:0,230,0:0:0:230,0:8062,0:-725.17,-69.2369,0,-725.17,-69.2369,-725.17	1/1:97:0,96,0:0:0:96,0:3332,0:-299.638,-28.8989,0,-299.638,-28.8989,-299.638	1/1:68:0,68,0:0:0:68,0:2388,0:-215.154,-20.47,0,-215.154,-20.47,-215.154	1/1:43:0,43,0:0:0:43,0:1506,0:-135.748,-12.9443,0,-135.748,-12.9443,-135.748	1/1:120:1,119,0:1:36:119,0:4147,0:-370.013,-32.736,0,-370.314,-35.8226,-373.062	1/1:76:0,75,0:0:0:75,0:2607,0:-234.51,-22.5773,0,-234.51,-22.5773,-234.51	1/1:77:0,77,0:0:0:77,0:2730,0:-245.911,-23.1793,0,-245.911,-23.1793,-245.911	1/1:61:1,60,0:1:36:60,0:2110,0:-186.559,-15.1244,0,-186.86,-18.0618,-189.798	1/1:59:0,58,1:0:0:58,1:2047,36:-184.111,-17.4597,0,-181.174,-14.1625,-180.873	1/1:44:0,44,0:0:0:44,0:1545,0:-139.334,-13.2453,0,-139.334,-13.2453,-139.334	1/1:37:0,37,0:0:0:37,0:1296,0:-116.937,-11.1381,0,-116.937,-11.1381,-116.937	1/1:17:0,17,0:0:0:17,0:600,0:-54.3275,-5.11751,0,-54.3275,-5.11751,-54.3275	1/1:148:0,148,0:0:0:148,0:5152,0:-463.798,-44.5524,0,-463.798,-44.5524,-463.798	1/1:153:0,153,0:0:0:153,0:5344,0:-480.65,-46.0576,0,-480.65,-46.0576,-480.65	1/1:215:0,215,0:0:0:215,0:7521,0:-676.279,-64.7215,0,-676.279,-64.7215,-676.279	1/1:130:0,129,1:0:0:129,1:4488,36:-403.664,-38.8329,0,-400.726,-35.5356,-400.425	1/2:73:0,36,37:0:0:36,37:1265,1314:-209.781,-106.873,-96.0357,-103.203,0,-92.065	1/1:66:0,66,0:0:0:66,0:2317,0:-208.713,-19.868,0,-208.713,-19.868,-208.713	1/2:371:1,200,170:1:36:200,170:6966,5969:-1048.59,-482.604,-425.335,-563.343,0,-515.106	1/1:190:0,190,0:0:0:190,0:6729,0:-605.647,-57.1957,0,-605.647,-57.1957,-605.647	1/2:38:1,22,15:1:36:22,15:757,528:-101.304,-40.1373,-36.3223,-58.6628,0,-56.9554	1/1:422:0,421,1:0:0:421,1:14746,36:-1326.12,-126.734,0,-1323.19,-123.436,-1322.89	1/1:130:0,123,7:0:0:123,7:4322,237:-388.825,-37.0267,0,-369.612,-17.4748,-367.505	1/2:146:0,63,82:0:0:63,82:2191,2917:-415.813,-237.675,-218.71,-178.189,0,-153.504	1/2:14:0,8,6:0:0:8,6:282,212:-40.5789,-17.6186,-15.2104,-23.3131,0,-21.5069	1/1:54:0,54,0:0:0:54,0:1884,0:-169.8,-16.2556,0,-169.8,-16.2556,-169.8	1/1:6:0,6,0:0:0:6,0:201,0:-18.3684,-1.80618,0,-18.3684,-1.80618,-18.3684	1/1:19:0,19,0:0:0:19,0:664,0:-60.0837,-5.71957,0,-60.0837,-5.71957,-60.0837	1/1:6:0,6,0:0:0:6,0:213,0:-19.5164,-1.80618,0,-19.5164,-1.80618,-19.5164	1/1:189:4,185,0:4:137:185,0:6510,0:-573.274,-44.2847,0,-574.478,-55.6906,-585.543	1/1:188:0,186,2:0:0:186,2:6479,72:-582.252,-55.9916,0,-576.377,-50.1068,-575.775	1/1:49:1,48,0:1:36:48,0:1678,0:-147.7,-11.1522,0,-148.001,-14.4494,-150.938	1/1:7:0,7,0:0:0:7,0:247,0:-22.5538,-2.10721,0,-22.5538,-2.10721,-22.5538	1/2:99:0,48,51:0:0:48,51:1694,1806:-285.384,-147.459,-133.009,-138.279,0,-122.926	1/2:33:0,18,15:0:0:18,15:645,518:-95.026,-42.4251,-37.0066,-52.9519,0,-48.4364	1/1:270:0,269,1:0:0:269,1:9406,36:-846.067,-80.9771,0,-843.13,-78.0563,-842.829	1/1:55:3,52,0:3:105:52,0:1830,0:-155.374,-6.98632,0,-156.277,-15.6536,-164.602	1/1:61:1,60,0:1:36:60,0:2117,0:-187.269,-14.8601,0,-187.57,-18.0618,-190.422	1/1:162:0,162,0:0:0:162,0:5668,0:-510.17,-48.7669,0,-510.17,-48.7669,-510.17	1/1:144:0,144,0:0:0:144,0:5023,0:-452.199,-43.3483,0,-452.199,-43.3483,-452.199	1/2:304:0,148,154:0:0:148,154:5154,5440:-861.827,-442.82,-398.267,-419.068,0,-372.709	1/1:140:0,140,0:0:0:140,0:4906,0:-441.63,-42.1442,0,-441.63,-42.1442,-441.63	1/1:163:2,161,0:2:71:161,0:5653,0:-502.193,-42.5205,0,-502.795,-48.4658,-508.424	1/1:91:1,90,0:1:36:90,0:3160,0:-281.083,-23.8576,0,-281.384,-27.0927,-284.266	1/1:19:0,19,0:0:0:19,0:661,0:-59.8135,-5.71957,0,-59.8135,-5.71957,-59.8135	1/1:65:0,65,0:0:0:65,0:2276,0:-205.035,-19.567,0,-205.035,-19.567,-205.035	1/1:61:0,61,0:0:0:61,0:2148,0:-193.576,-18.3628,0,-193.576,-18.3628,-193.576	1/1:6:0,6,0:0:0:6,0:198,0:-18.1242,-1.80618,0,-18.1242,-1.80618,-18.1242	1/2:182:0,92,89:0:0:92,89:3215,3159:-518.498,-256.978,-229.283,-261.483,0,-234.692	1/1:59:0,57,1:0:0:57,1:2001,36:-180.023,-17.1587,0,-177.085,-14.17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chr01	12621949	.	C	A	81941.9	PASS	AB=0.534987;ABP=19.7246;AC=154;AF=0.819149;AN=188;AO=3768;CIGAR=1X;DP=4503;DPB=4503;DPRA=0;EPP=8167.76;EPPR=1599.04;GTI=2;LEN=1;MEANALT=1;MQM=59.9098;MQMR=60;NS=94;NUMALT=1;ODDS=0.383425;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134355;QR=26164;RO=735;RPL=2;RPP=8167.76;RPPR=1599.04;RPR=3766;RUN=1;SAF=0;SAP=8185.12;SAR=3768;SRF=0;SRP=1599.04;SRR=735;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1955:-176.225,-16.5567,0	0/1:37:15,22:15:536:22:788:-60.1067,0,-37.4367	1/1:128:0,128:0:0:128:4571:-411.553,-38.5318,0	1/1:83:0,83:0:0:83:2946:-265.371,-24.9855,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:34:0,34:0:0:34:1208:-109.025,-10.235,0	0/1:31:20,11:20:716:11:396:-26.6493,0,-55.4358	1/1:88:0,88:0:0:88:3122:-281.186,-26.4906,0	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:20:0,20:0:0:20:705:-63.7737,-6.0206,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:29:11,18:11:392:18:648:-49.9205,0,-26.8902	1/1:41:0,41:0:0:41:1445:-130.344,-12.3422,0	0/1:20:8,12:8:284:12:423:-32.3845,0,-19.8828	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:16:8,8:8:288:8:285:-21.178,0,-21.4509	0/1:10:5,5:5:176:5:176:-13.1747,0,-13.1747	0/1:85:42,43:42:1508:43:1532:-112.586,0,-110.427	0/1:59:37,22:37:1313:22:784:-53.1231,0,-100.709	0/1:55:36,19:36:1269:19:684:-45.3337,0,-97.9541	1/1:41:0,41:0:0:41:1469:-132.112,-12.3422,0	0/1:33:3,30:3:108:30:1080:-87.5793,0,-0.14118	1/1:29:0,29:0:0:29:1023:-92.3662,-8.72987,0	0/1:96:43,53:43:1521:53:1896:-142.019,0,-108.282	1/1:142:0,142:0:0:142:5081:-457.434,-42.7463,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:116:60,56:60:2133:56:2012:-146.432,0,-157.317	1/1:98:0,98:0:0:98:3500:-315.086,-29.5009,0	1/1:103:0,103:0:0:103:3676:-330.483,-31.0061,0	1/1:9:0,9:0:0:9:309:-28.1407,-2.70927,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:24:0,24:0:0:24:851:-76.9095,-7.22472,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:46:12,34:12:432:34:1205:-94.9065,0,-25.3738	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:23:9,14:9:320:14:504:-38.7744,0,-22.2187	0/1:3:1,2:1:36:2:57:-4.51022,0,-2.69518	0/1:76:35,41:35:1256:41:1436:-106.655,0,-90.467	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:67:0,67:0:0:67:2377:-214.185,-20.169,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:71:0,71:0:0:71:2535:-228.4,-21.3731,0	1/1:75:0,75:0:0:75:2679:-241.353,-22.5773,0	0/1:96:51,45:51:1824:45:1612:-116.471,0,-135.542	0/1:67:32,35:32:1143:35:1253:-92.8951,0,-83.0097	0/1:39:16,23:16:572:23:828:-63.1039,0,-40.0733	1/1:53:0,53:0:0:53:1884:-169.822,-15.9546,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:143:0,143:0:0:143:5100:-459.12,-43.0473,0	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:103:0,103:0:0:103:3633:-327.134,-31.0061,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:15:3,12:3:108:12:428:-34.3434,0,-5.55972	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:69:0,69:0:0:69:2450:-220.753,-20.7711,0	1/1:113:0,113:0:0:113:3993:-359.133,-34.0164,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:65:0,65:0:0:65:2317:-208.79,-19.567,0	1/1:88:1,87:1:36:87:3094:-275.087,-22.8924,0	1/1:81:3,78:3:93:78:2800:-243.563,-15.7067,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:29:0,29:0:0:29:1040:-93.9128,-8.72987,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:83:37,46:37:1317:46:1617:-120.827,0,-93.8443	0/1:28:17,11:17:589:11:396:-27.5539,0,-44.9045	0/1:105:48,57:48:1694:57:2018:-150.281,0,-121.134	1/1:100:0,100:0:0:100:3579:-322.317,-30.103,0	0/1:32:6,26:6:216:26:936:-74.9265,0,-10.1576	1/1:46:0,46:0:0:46:1652:-148.966,-13.8474,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:51:23,28:23:828:28:993:-74.33,0,-59.4916	0/1:45:24,21:24:864:21:744:-53.738,0,-64.5362	0/1:94:38,56:38:1345:56:2004:-152.337,0,-93.0513	0/1:32:13,19:13:464:19:666:-50.6305,0,-32.4645	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:39:20,19:20:707:19:677:-49.5174,0,-52.2144	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:26:0,26:0:0:26:923:-83.386,-7.82678,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:20:0,20:0:0:20:720:-65.1284,-6.0206,0	0/1:55:25,30:25:892:30:1076:-80.5962,0,-64.043	0/1:22:17,5:17:612:5:180:-9.9294,0,-48.7908	1/1:123:0,123:0:0:123:4347:-391.403,-37.0267,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0
chr01	12730219	.	AGACA	GGACA,GGACC	124088	PASS	AB=0.430672,0.563866;ABP=102.369,87.3291;AC=154,34;AF=0.819149,0.180851;AN=188;AO=4370,1349;CIGAR=1X4M,1X3M1X;DP=5750;DPB=5750;DPRA=30.9032,1.35904;EPP=9405.68,2923.65;EPPR=5.18177;GTI=5;LEN=1,5;MEANALT=1.66667,2.30556;MQM=59.9849,59.7005;MQMR=60;NS=94;NUMALT=2;ODDS=1.22161;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=156163,47083;QR=31;RO=1;RPL=10,1;RPP=9405.68,2923.65;RPPR=5.18177;RPR=4360,1348;RUN=1,1;SAF=4370,1349;SAP=9492.34,2932.33;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:58:0,56,0:0:0:56,0:2008,0:-180.634,-16.8577,0,-180.634,-16.8577,-180.634	1/2:74:0,39,34:0:0:39,34:1400,1184:-210.564,-96.3568,-84.6167,-114.287,0,-104.052	1/1:105:0,105,0:0:0:105,0:3760,0:-338.6,-31.6082,0,-338.6,-31.6082,-338.6	1/1:120:0,119,0:0:0:119,0:4264,0:-383.588,-35.8226,0,-383.588,-35.8226,-383.588	1/1:23:0,23,0:0:0:23,0:820,0:-74.1225,-6.92369,0,-74.1225,-6.92369,-74.1225	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:37:0,12,24:0:0:12,24:428,834:-102.679,-67.7866,-64.1743,-34.8869,0,-27.6622	1/1:118:0,118,0:0:0:118,0:4240,0:-381.778,-35.5215,0,-381.778,-35.5215,-381.778	1/1:97:0,97,0:0:0:97,0:3469,0:-312.422,-29.1999,0,-312.422,-29.1999,-312.422	1/1:45:0,45,0:0:0:45,0:1612,0:-145.37,-13.5464,0,-145.37,-13.5464,-145.37	1/1:36:0,36,0:0:0:36,0:1271,0:-114.692,-10.8371,0,-114.692,-10.8371,-114.692	1/1:52:0,52,0:0:0:52,0:1864,0:-168.039,-15.6536,0,-168.039,-15.6536,-168.039	1/2:60:0,32,28:0:0:32,28:1143,991:-174.258,-81.0671,-71.4341,-93.5457,0,-85.1169	1/1:43:0,43,0:0:0:43,0:1531,0:-138.082,-12.9443,0,-138.082,-12.9443,-138.082	1/2:38:0,20,17:0:0:20,17:716,600:-107.158,-48.7663,-42.7457,-58.3876,0,-53.2701	1/1:47:0,47,0:0:0:47,0:1684,0:-151.847,-14.1484,0,-151.847,-14.1484,-151.847	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:20:0,11,9:0:0:11,9:392,322:-58.5668,-26.615,-23.3037,-32.3087,0,-29.5995	1/2:21:0,6,15:0:0:6,15:212,526:-60.3855,-43.1192,-41.313,-17.6186,0,-13.1032	1/2:117:0,61,54:0:0:61,54:2180,1861:-328.932,-151.18,-132.817,-177.79,0,-161.534	1/2:124:0,46,78:0:0:46,78:1652,2707:-355.148,-220.381,-206.534,-135.121,0,-111.641	1/2:77:0,30,47:0:0:30,47:1072,1618:-219.164,-131.755,-122.724,-87.7616,0,-73.6131	1/1:81:0,81,0:0:0:81,0:2908,0:-261.955,-24.3834,0,-261.955,-24.3834,-261.955	1/1:48:0,48,0:0:0:48,0:1702,0:-153.464,-14.4494,0,-153.464,-14.4494,-153.464	1/1:61:0,61,0:0:0:61,0:2179,0:-196.376,-18.3628,0,-196.376,-18.3628,-196.376	1/2:152:0,70,80:0:0:70,80:2503,2780:-430.15,-226.053,-204.981,-204.148,0,-180.066	1/1:166:0,166,0:0:0:166,0:5893,0:-530.483,-49.971,0,-530.483,-49.971,-530.483	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/2:210:0,71,138:0:0:71,138:2552,4782:-596.843,-388.641,-367.268,-208.197,0,-166.655	1/1:83:0,82,0:0:0:82,0:2948,0:-265.193,-24.6845,0,-265.193,-24.6845,-265.193	1/1:78:0,78,0:0:0:78,0:2776,0:-250.079,-23.4803,0,-250.079,-23.4803,-250.079	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:4:0,3,1:0:0:3,1:108,30:-11.5557,-2.69854,-1.79545,-9.17208,0,-8.87105	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:139:0,64,75:0:0:64,75:2261,2656:-400.843,-216.711,-197.445,-184.485,0,-161.908	1/1:114:0,113,0:0:0:113,0:4039,0:-363.338,-34.0164,0,-363.338,-34.0164,-363.338	1/2:21:0,4,17:0:0:4,17:144,605:-61.414,-49.6635,-48.4594,-12.1095,0,-6.99199	2/2:2:0,0,2:0:0:0,2:0,67:-6.36284,-6.36284,-6.36284,-0.60206,-0.60206,0	1/2:74:0,23,47:0:0:23,47:819,1625:-198.815,-132.059,-125.136,-66.7805,0,-52.6321	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:74:0,73,0:0:0:73,0:2620,0:-235.687,-21.9752,0,-235.687,-21.9752,-235.687	1/1:31:0,31,0:0:0:31,0:1107,0:-99.9402,-9.33193,0,-99.9402,-9.33193,-99.9402	1/1:46:0,45,0:0:0:45,0:1600,0:-144.077,-13.5464,0,-144.077,-13.5464,-144.077	1/1:86:0,85,0:0:0:85,0:3052,0:-274.549,-25.5876,0,-274.549,-25.5876,-274.549	1/1:66:0,66,0:0:0:66,0:2364,0:-213.018,-19.868,0,-213.018,-19.868,-213.018	1/2:103:0,57,46:0:0:57,46:2036,1594:-295.901,-129.899,-112.74,-166.354,0,-152.506	1/2:62:0,22,40:0:0:22,40:783,1427:-180.496,-116.682,-110.059,-64.1703,0,-52.1291	1/2:79:0,45,34:0:0:45,34:1600,1204:-228.82,-98.4311,-84.8847,-130.744,0,-120.509	1/1:158:0,157,0:0:0:157,0:5632,0:-506.64,-47.2617,0,-506.64,-47.2617,-506.64	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:82:0,82,0:0:0:82,0:2932,0:-264.111,-24.6845,0,-264.111,-24.6845,-264.111	1/1:34:0,34,0:0:0:34,0:1216,0:-109.747,-10.235,0,-109.747,-10.235,-109.747	1/1:11:0,11,0:0:0:11,0:388,0:-35.2195,-3.31133,0,-35.2195,-3.31133,-35.2195	1/1:98:0,97,0:0:0:97,0:3472,0:-312.332,-29.1999,0,-312.332,-29.1999,-312.332	1/1:54:0,54,0:0:0:54,0:1914,0:-172.536,-16.2556,0,-172.536,-16.2556,-172.536	1/1:2:0,2,0:0:0:2,0:68,0:-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chr01	12730250	.	T	C	22842.4	PASS	AB=0.562395;ABP=83.2193;AC=34;AF=0.180851;AN=188;AO=1344;CIGAR=1X;DP=5765;DPB=5765;DPRA=1.33178;EPP=2921.47;EPPR=9590.06;GTI=5;LEN=1;MEANALT=1.05405;MQM=59.692;MQMR=59.9814;NS=94;NUMALT=1;ODDS=1.76054;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47704;QR=157941;RO=4419;RPL=1344;RPP=2921.47;RPPR=9590.06;RPR=0;RUN=1;SAF=1344;SAP=2921.47;SAR=0;SRF=4419;SRP=9598.75;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/1:74:40,34:40:1440:34:1203:-86.2988,0,-107.622	0/0:107:107,0:107:3801:0:0:0,-32.2102,-342.289	0/0:121:121,0:121:4335:0:0:0,-36.4246,-389.698	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:37:14,23:14:492:23:824:-63.3405,0,-33.4742	0/0:121:121,0:121:4305:0:0:0,-36.4246,-387.628	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/1:60:32,28:32:1152:28:996:-71.8849,0,-85.9283	0/0:43:43,0:43:1527:0:0:0,-12.9443,-137.722	0/1:37:20,17:20:720:17:604:-43.4636,0,-53.9907	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:17:17,0:17:574:0:0:0,-5.11751,-51.976	0/1:20:11,9:11:392:9:324:-23.4853,0,-29.5995	0/1:22:7,15:7:248:15:536:-41.9162,0,-16.0415	0/1:117:61,56:61:2162:56:2000:-145.03,0,-159.625	0/1:124:46,78:46:1643:78:2739:-209.412,0,-110.83	0/1:76:30,46:30:1071:46:1635:-124.557,0,-73.8233	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:47:46,1:46:1626:1:32:0,-10.9491,-143.426	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:147:67,80:67:2408:80:2827:-210.409,0,-172.723	0/0:162:162,0:162:5793:0:0:0,-48.7669,-521.483	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/1:211:74,137:74:2652:137:4860:-374.035,0,-175.409	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.157	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:11:11,0:11:380:0:0:0,-3.31133,-34.532	0/1:140:63,76:63:2256:76:2699:-201.1,0,-161.247	0/0:115:115,0:115:4119:0:0:0,-34.6184,-370.894	0/1:21:4,17:4:144:17:604:-48.369,0,-6.99199	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:77:29,48:29:1036:48:1716:-131.537,0,-70.3746	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.58	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.709	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/1:102:57,45:57:2035:45:1586:-112.319,0,-152.717	0/1:62:23,39:23:828:39:1396:-107.271,0,-56.1803	0/1:78:45,33:45:1605:33:1176:-82.6674,0,-121.258	0/0:160:160,0:160:5740:0:0:0,-48.1648,-516.715	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:80:80,0:80:2839:0:0:0,-24.0824,-255.741	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.4285	0/0:101:101,0:101:3600:0:0:0,-30.404,-324.205	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:10:7,3:7:252:3:93:-5.66643,0,-20.0187	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:100:100,0:100:3560:0:0:0,-30.103,-320.607	0/0:116:114,2:114:4084:2:72:0,-28.0828,-360.909	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.805	0/0:38:36,2:36:1284:2:68:0,-4.98242,-109.407	0/0:104:104,0:104:3722:0:0:0,-31.3071,-335.18	0/0:98:95,3:95:3389:3:108:0,-19.4258,-295.149	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:112:41,70:41:1476:70:2459:-187.681,0,-99.5083	0/1:123:48,75:48:1720:75:2687:-205.034,0,-118.059	0/1:109:47,62:47:1673:62:2191:-164.608,0,-118.043	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.876	0/1:41:21,20:21:741:20:716:-52.4091,0,-54.6694	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:58:24,34:24:860:34:1202:-91.02,0,-60.2621	0/1:54:16,38:16:576:38:1360:-106.443,0,-35.9194	0/1:163:74,89:74:2660:89:3173:-236.719,0,-190.577	0/1:48:18,30:18:629:30:1060:-81.2136,0,-42.4843	0/1:42:22,20:22:788:20:720:-52.4762,0,-58.6015	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:86:42,44:42:1504:44:1559:-114.712,0,-109.766	0/1:13:3,10:3:108:10:356:-28.4669,0,-6.16178	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:53:26,27:26:936:27:955:-70.301,0,-68.6049	0/1:51:21,30:21:756:30:1060:-80.3564,0,-53.0147	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29
chr01	12961358	.	TT	CC,CT	146497	PASS	AB=0.442427,0.556378;ABP=123.528,118.579;AC=154,32;AF=0.827957,0.172043;AN=186;AO=7285,2351;CIGAR=2X,1X1M;DP=9659;DPB=9659;DPRA=0,1.91281;EPP=15822.2,5108.14;EPPR=0;GTI=8;LEN=2,1;MEANALT=1.68817,2.21951;MQM=27.5831,39.7146;MQMR=0;NS=93;NUMALT=2;ODDS=0.726345;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=257892,83241;QR=0;RO=0;RPL=0,0;RPP=15822.2,5108.14;RPPR=0;RPR=7285,2351;RUN=1,1;SAF=7285,2351;SAP=15822.2,5108.14;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46,0:0:0:46,0:1620,0:-100.581,-13.8474,0,-100.581,-13.8474,-100.581	1/2:147:0,71,76:0:0:71,76:2511,2643:-332.096,-197.948,-176.575,-134.429,0,-111.551	1/1:157:0,157,0:0:0:157,0:5533,0:-344.947,-47.2617,0,-344.947,-47.2617,-344.947	1/1:252:0,250,1:0:0:250,1:8910,36:-623.484,-75.2575,0,-620.652,-72.3843,-620.351	1/1:113:0,112,0:0:0:112,0:3972,0:-264.534,-33.7154,0,-264.534,-33.7154,-264.534	1/1:69:0,69,0:0:0:69,0:2442,0:-152.141,-20.7711,0,-152.141,-20.7711,-152.141	1/2:145:0,67,78:0:0:67,78:2335,2766:-361.152,-216.03,-195.861,-145.427,0,-121.947	1/1:142:0,142,0:0:0:142,0:4999,0:-310.253,-42.7463,0,-310.253,-42.7463,-310.253	1/1:138:0,137,0:0:0:137,0:4844,0:-300.841,-41.2411,0,-300.841,-41.2411,-300.841	1/1:92:0,91,0:0:0:91,0:3225,0:-225.664,-27.3937,0,-225.664,-27.3937,-225.664	1/1:14:0,14,0:0:0:14,0:498,0:-35.7181,-4.21442,0,-35.7181,-4.21442,-35.7181	1/1:30:0,30,0:0:0:30,0:1063,0:-66.2972,-9.0309,0,-66.2972,-9.0309,-66.2972	1/2:40:0,19,21:0:0:19,21:675,744:-92.0378,-56.0421,-50.3226,-36.2798,0,-29.9582	1/1:40:0,40,0:0:0:40,0:1415,0:-94.3694,-12.0412,0,-94.3694,-12.0412,-94.3694	1/2:29:0,14,15:0:0:14,15:500,533:-72.7567,-41.9558,-37.7414,-31.1097,0,-26.5943	1/1:24:0,24,0:0:0:24,0:864,0:-57.4746,-7.22472,0,-57.4746,-7.22472,-57.4746	1/1:29:0,29,0:0:0:29,0:1020,0:-63.743,-8.72987,0,-63.743,-8.72987,-63.743	1/2:24:0,19,5:0:0:19,5:662,180:-49.8818,-13.8871,-8.16755,-36.3104,0,-34.8053	1/2:2:0,1,1:0:0:1,1:36,36:-4.92034,-3.04512,-2.74409,-2.16588,0,-1.86485	1/2:290:0,143,147:0:0:143,147:5048,5223:-720.092,-407.939,-364.892,-312.461,0,-268.21	1/2:201:0,93,108:0:0:93,108:3307,3834:-487.17,-294.945,-266.95,-192.521,0,-160.01	1/2:224:0,70,154:0:0:70,154:2473,5483:-595.459,-434.387,-413.315,-161.38,0,-115.021	1/1:67:0,66,1:0:0:66,1:2319,36:-164.866,-19.868,0,-162.033,-16.6883,-161.732	1/1:196:0,186,9:0:0:186,9:6588,323:-440.312,-55.9916,0,-415.488,-31.0539,-412.779	1/1:105:0,104,0:0:0:104,0:3655,0:-244.431,-31.3071,0,-244.431,-31.3071,-244.431	1/2:453:0,175,278:0:0:175,278:6191,9901:-1189.55,-785.533,-732.853,-404.328,0,-320.642	1/1:204:0,203,0:0:0:203,0:7164,0:-478.194,-61.1091,0,-478.194,-61.1091,-478.194	1/1:8:0,8,0:0:0:8,0:264,0:-18.4978,-2.40824,0,-18.4978,-2.40824,-18.4978	1/2:369:0,181,188:0:0:181,188:6443,6704:-953.623,-531.394,-476.907,-422.549,0,-365.955	1/1:170:0,168,1:0:0:168,1:5956,36:-397.823,-50.573,0,-395.042,-47.7361,-394.741	1/1:134:0,134,0:0:0:134,0:4749,0:-335.295,-40.338,0,-335.295,-40.338,-335.295	1/1:5:0,5,0:0:0:5,0:178,0:-11.9996,-1.50515,0,-11.9996,-1.50515,-11.9996	1/1:8:0,8,0:0:0:8,0:277,0:-19.0058,-2.40824,0,-19.0058,-2.40824,-19.0058	1/2:5:0,1,4:0:0:1,4:36,143:-12.9429,-11.0405,-10.7395,-2.16588,0,-0.961755	1/1:10:0,10,0:0:0:10,0:358,0:-22.4322,-3.0103,0,-22.4322,-3.0103,-22.4322	1/1:7:0,7,0:0:0:7,0:248,0:-15.7464,-2.10721,0,-15.7464,-2.10721,-15.7464	1/2:104:0,45,59:0:0:45,59:1585,2097:-270.085,-166.277,-152.731,-104.122,0,-86.3616	1/1:316:0,315,1:0:0:315,1:11130,36:-743.153,-94.8245,0,-740.372,-91.7019,-740.071	1/2:16:0,6,10:0:0:6,10:216,360:-38.7343,-27.5101,-25.7039,-11.5012,0,-8.49091	.:.:.:.:.:.:.:.	1/2:210:0,110,100:0:0:110,100:3901,3498:-494.948,-269.094,-235.98,-226.153,0,-196.05	1/1:6:0,6,0:0:0:6,0:203,0:-14.2117,-1.80618,0,-14.2117,-1.80618,-14.2117	1/1:212:0,210,1:0:0:210,1:7416,36:-496.014,-63.2163,0,-493.233,-60.3727,-492.932	1/1:23:0,23,0:0:0:23,0:817,0:-57.1195,-6.92369,0,-57.1195,-6.92369,-57.1195	1/1:27:0,27,0:0:0:27,0:966,0:-67.003,-8.12781,0,-67.003,-8.12781,-67.003	1/1:189:0,188,0:0:0:188,0:6642,0:-491.528,-56.5936,0,-491.528,-56.5936,-491.528	1/1:138:0,137,0:0:0:137,0:4819,0:-299.451,-41.2411,0,-299.451,-41.2411,-299.451	1/2:251:0,103,147:0:0:103,147:3644,5159:-627.554,-401.954,-370.948,-225.619,0,-181.368	1/2:150:0,56,93:0:0:56,93:1995,3288:-379.491,-256.477,-239.619,-123.079,0,-95.083	1/2:156:0,71,85:0:0:71,85:2491,3019:-391.259,-235.83,-214.457,-155.735,0,-130.148	1/1:218:0,218,0:0:0:218,0:7725,0:-570.229,-65.6245,0,-570.229,-65.6245,-570.229	1/1:3:0,3,0:0:0:3,0:108,0:-7.89903,-0.90309,0,-7.89903,-0.90309,-7.89903	1/1:169:0,168,0:0:0:168,0:5914,0:-369.326,-50.573,0,-369.326,-50.573,-369.326	1/1:15:0,15,0:0:0:15,0:529,0:-38.4595,-4.51545,0,-38.4595,-4.51545,-38.4595	1/1:18:0,18,0:0:0:18,0:640,0:-39.6954,-5.41854,0,-39.6954,-5.41854,-39.6954	1/1:128:0,126,0:0:0:126,0:4446,0:-296.646,-37.9298,0,-296.646,-37.9298,-296.646	1/1:48:0,48,0:0:0:48,0:1675,0:-119.79,-14.4494,0,-119.79,-14.4494,-119.79	1/1:6:0,6,0:0:0:6,0:216,0:-16.3941,-1.80618,0,-16.3941,-1.80618,-1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chr01	13096162	.	C	G	839.58	PASS	AB=0.169123;ABP=1358.08;AC=22;AF=0.11828;AN=186;AO=282;CIGAR=1X;DP=8422;DPB=8422;DPRA=0.691595;EPP=615.366;EPPR=17670.1;GTI=14;LEN=1;MEANALT=1.06452;MQM=59.766;MQMR=59.9615;NS=93;NUMALT=1;ODDS=193.32;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=10075;QR=289856;RO=8136;RPL=282;RPP=615.366;RPPR=17670.1;RPR=0;RUN=1;SAF=0;SAP=615.366;SAR=282;SRF=0;SRP=17670.1;SRR=8136;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:93:93,0:93:3261:0:0:0,-27.9958,-293.704	0/1:64:54,9:54:1895:9:324:-10.1811,0,-151.498	0/0:208:208,0:208:7408:0:0:0,-62.6142,-666.273	0/0:299:299,0:299:10627:0:0:0,-90.008,-956.336	0/0:68:68,0:68:2408:0:0:0,-20.47,-216.975	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:191:191,0:191:6803:0:0:0,-57.4967,-612.338	0/0:114:114,0:114:4081:0:0:0,-34.3174,-367.474	0/0:110:110,0:110:3929:0:0:0,-33.1133,-353.801	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:104:104,0:104:3710:0:0:0,-31.3071,-334.029	0/1:35:28,7:28:1008:7:252:-12.4929,0,-80.5003	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.484	0/1:52:42,10:42:1497:10:360:-17.0907,0,-119.369	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:83:78,4:78:2804:4:144:0,-11.7307,-239.286	0/1:132:117,15:117:4135:15:540:-9.19967,0,-332.598	0/1:71:63,8:63:2260:8:288:-4.89428,0,-182.289	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082	0/0:95:95,0:95:3385:0:0:0,-28.5978,-304.865	0/0:105:105,0:105:3727:0:0:0,-31.6081,-335.628	0/1:161:133,28:133:4720:28:989:-40.8553,0,-376.466	0/0:297:297,0:297:10570:0:0:0,-89.4059,-951.211	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:89:82,7:82:2944:7:252:0,-3.76271,-242.164	0/0:213:213,0:213:7599:0:0:0,-64.1194,-683.09	0/0:130:130,0:130:4619:0:0:0,-39.1339,-415.872	.:.:.:.:.:.:.:.	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5297	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/1:145:108,37:108:3880:37:1324:-75.8114,0,-305.744	0/0:210:210,0:210:7384:0:0:0,-63.2163,-664.611	0/1:19:17,2:17:608:2:72:-1.11715,0,-49.3325	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:88:86,2:86:3062:2:68:0,-20.0329,-269.349	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:234:234,0:234:8355:0:0:0,-70.441,-751.954	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:233:233,0:233:8289:0:0:0,-70.14,-746.017	0/0:144:144,0:144:5165:0:0:0,-43.3483,-464.959	0/0:109:103,6:103:3643:6:212:0,-14.1007,-309.361	0/1:64:57,7:57:2040:7:248:-3.39827,0,-164.606	0/0:61:57,4:57:2029:4:144:0,-5.04921,-169.567	0/0:216:216,0:216:7650:0:0:0,-65.0225,-688.536	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:148:148,0:148:5312:0:0:0,-44.5524,-478.213	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:157:157,0:157:5557:0:0:0,-47.2617,-500.252	0/0:83:83,0:83:2954:0:0:0,-24.9855,-266.091	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/0:82:80,0:80:2864:0:0:0,-24.0824,-257.637	0/0:106:106,0:106:3774:0:0:0,-31.9092,-339.857	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:179:179,0:179:6405:0:0:0,-53.8844,-576.537	0/0:320:320,0:320:11413:0:0:0,-96.3296,-1026.55	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.425	0/0:173:173,0:173:6121:0:0:0,-52.0782,-550.989	0/0:133:133,0:133:4757:0:0:0,-40.037,-428.286	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:50:50,0:50:1743:0:0:0,-15.0515,-157.148	0/0:128:123,5:123:4374:5:180:0,-21.9807,-377.282	0/1:63:54,9:54:1921:9:324:-10.541,0,-153.954	0/1:141:124,17:124:4373:17:597:-11.6109,0,-351.291	0/0:250:250,0:250:8913:0:0:0,-75.2575,-802.149	0/0:78:73,5:73:2597:5:180:0,-6.92827,-217.397	0/0:130:130,0:130:4657:0:0:0,-39.1339,-419.29	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:68:62,6:62:2232:6:216:0,-0.811329,-181.485	0/1:53:48,5:48:1694:5:180:-0.597475,0,-136.788	0/1:171:138,33:138:4896:33:1173:-54.3994,0,-389.225	0/1:42:26,16:26:932:16:576:-39.5317,0,-71.5556	0/0:35:33,2:33:1188:2:72:0,-3.69933,-100.392	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:75:63,12:63:2248:12:428:-16.2816,0,-180.004	0/1:17:15,2:15:540:2:72:-1.71921,0,-43.819	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:48:40,8:40:1421:8:288:-11.818,0,-113.736	0/1:37:28,9:28:1004:9:320:-18.0042,0,-79.5378	0/0:86:86,0:86:3042:0:0:0,-25.8886,-274.009	0/0:106:106,0:106:3816:0:0:0,-31.9092,-343.635
chr01	13188011	.	C	T	160044	PASS	AB=0.801578;ABP=1404.43;AC=162;AF=0.861702;AN=188;AO=6968;CIGAR=1X;DP=7369;DPB=7369;DPRA=0;EPP=13908.9;EPPR=828.713;GTI=9;LEN=1;MEANALT=1.01064;MQM=59.9641;MQMR=59.99;NS=94;NUMALT=1;ODDS=1.04521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=249194;QR=14196;RO=400;RPL=144;RPP=13908.9;RPPR=828.713;RPR=6824;RUN=1;SAF=6968;SAP=15133.8;SAR=0;SRF=400;SRP=871.599;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:109:0,109:0:0:109:3903:-351.463,-32.8123,0	0/1:37:11,26:11:388:26:928:-72.7001,0,-24.1193	1/1:142:0,142:0:0:142:5076:-456.977,-42.7463,0	1/1:158:0,158:0:0:158:5633:-507.092,-47.5627,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	0/1:88:18,70:18:644:70:2503:-199.031,0,-31.8	1/1:181:0,181:0:0:181:6495:-584.632,-54.4864,0	1/1:192:0,192:0:0:192:6887:-619.895,-57.7978,0	1/1:67:0,67:0:0:67:2391:-215.447,-20.169,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	0/1:38:12,26:12:424:26:920:-71.6774,0,-27.0573	1/1:47:0,47:0:0:47:1673:-150.856,-14.1484,0	0/1:35:8,27:8:288:27:959:-76.0893,0,-15.7314	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:15:7,8:7:248:8:273:-20.3847,0,-18.1487	0/1:26:3,23:3:108:23:817:-65.7534,0,-2.24839	0/1:150:15,135:15:536:135:4842:-390.777,0,-3.42031	0/1:87:19,68:19:680:68:2436:-193.306,0,-35.3396	0/1:34:11,23:11:396:23:820:-63.8875,0,-25.7477	1/1:154:0,154:0:0:154:5505:-495.573,-46.3586,0	1/1:124:1,123:1:36:123:4383:-391.045,-33.7294,0	1/1:132:0,132:0:0:132:4719:-424.87,-39.736,0	0/1:190:31,159:31:1082:159:5682:-454.275,0,-40.4915	1/1:314:0,314:0:0:314:11225:-1010.14,-94.5234,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:205:26,179:26:911:179:6387:-513.208,0,-20.5938	1/1:112:0,112:0:0:112:4003:-360.459,-33.7154,0	1/1:85:0,85:0:0:85:3028:-272.713,-25.5876,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:112:27,85:27:968:85:3047:-240.743,0,-53.722	1/1:97:0,97:0:0:97:3459:-311.522,-29.1999,0	0/1:33:5,28:5:180:28:985:-79.0275,0,-6.61807	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:69:4,65:4:135:65:2319:-196.358,-8.28856,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:192:0,192:0:0:192:6878:-618.957,-57.7978,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:180:0,180:0:0:180:6410:-576.989,-54.1854,0	1/1:133:0,133:0:0:133:4776:-429.995,-40.037,0	0/1:125:15,110:15:532:110:3920:-315.363,0,-10.582	0/1:44:12,32:12:428:32:1123:-88.1303,0,-25.6135	0/1:43:7,36:7:252:36:1288:-103.279,0,-10.0847	1/1:274:0,274:0:0:274:9844:-885.898,-82.4822,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:52:0,52:0:0:52:1842:-166.059,-15.6536,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:135:0,135:0:0:135:4830:-434.85,-40.6391,0	1/1:86:0,86:0:0:86:3079:-276.482,-25.8886,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:114:0,114:0:0:114:4075:-366.932,-34.3174,0	1/1:75:0,75:0:0:75:2699:-242.996,-22.5773,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	1/1:135:0,135:0:0:135:4831:-434.944,-40.6391,0	1/1:103:0,103:0:0:103:3676:-331.044,-31.0061,0	1/1:97:0,96:0:0:96:3439:-309.505,-28.8989,0	1/1:225:0,225:0:0:225:8035:-723.172,-67.7318,0	1/1:173:1,172:1:36:172:6141:-549.185,-48.4799,0	1/1:21:0,21:0:0:21:737:-66.6506,-6.32163,0	1/1:76:0,76:0:0:76:2727:-245.672,-22.8783,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:130:23,107:23:820:107:3827:-305.491,0,-34.9886	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:189:17,172:17:604:172:6142:-498.185,-2.20406,0	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	1/1:75:5,70:5:176:70:2495:-208.618,-6.39223,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:48:9,39:9:320:39:1400:-111.85,0,-14.6929	0/1:72:14,58:14:496:58:2080:-165.796,0,-23.3001	1/1:215:20,195:20:707:195:6988:-565.008,-0.76687,0	0/1:47:17,30:17:608:30:1076:-83.0044,0,-40.9036	0/1:39:11,28:11:396:28:1008:-79.2962,0,-24.2426	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	0/1:71:16,55:16:572:55:1947:-154.13,0,-30.4403	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.6223	1/1:72:0,72:0:0:72:2583:-232.717,-21.6742,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:32:13,19:13:441:19:680:-51.8962,0,-30.38	0/1:43:14,29:14:496:29:1044:-81.3305,0,-32.03	1/1:23:0,23:0:0:23:813:-73.49,-6.92369,0	1/1:69:0,69:0:0:69:2479:-223.363,-20.7711,0
chr01	13261030	.	A	G	171182	PASS	AB=0.476331;ABP=19.457;AC=153;AF=0.81383;AN=188;AO=6120;CIGAR=1X;DP=7907;DPB=7907;DPRA=85.9239;EPP=10257.7;EPPR=2487.18;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9289;MQMR=59.9944;NS=94;NUMALT=1;ODDS=0.374075;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=216659;QR=63871;RO=1785;RPL=3113;RPP=6.99701;RPPR=8.47122;RPR=3007;RUN=1;SAF=3485;SAP=259.365;SAR=2635;SRF=1037;SRP=104.615;SRR=748;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1428:-128.519,-12.0412,0	0/1:121:68,53:68:2439:53:1869:-132.062,0,-183.34	1/1:73:0,73:0:0:73:2587:-233.08,-21.9752,0	1/1:82:1,81:1:36:81:2864:-254.4,-21.0862,0	1/1:60:0,60:0:0:60:2122:-191.244,-18.0618,0	1/1:59:0,59:0:0:59:2069:-186.48,-17.7608,0	0/1:110:63,47:63:2238:47:1666:-117.113,0,-168.569	1/1:103:0,103:0:0:103:3583:-322.661,-31.0061,0	1/1:132:0,132:0:0:132:4676:-420.987,-39.736,0	1/1:57:0,57:0:0:57:1991:-179.461,-17.1587,0	1/1:116:0,116:0:0:116:4143:-373.052,-34.9195,0	1/1:125:0,125:0:0:125:4368:-392.788,-37.6288,0	0/1:120:49,71:49:1749:71:2522:-191.107,0,-121.569	1/1:162:0,162:0:0:162:5727:-515.541,-48.7669,0	0/1:105:55,50:55:1961:50:1746:-125.812,0,-145.155	1/1:83:0,83:0:0:83:2940:-264.803,-24.9855,0	1/1:93:1,92:1:36:92:3264:-290.381,-24.3975,0	0/1:84:44,40:44:1564:40:1408:-101.727,0,-115.765	0/1:96:51,45:51:1823:45:1611:-116.38,0,-135.452	0/1:159:82,76:82:2940:76:2723:-197.39,0,-216.911	0/1:141:74,67:74:2664:67:2370:-171.111,0,-197.56	0/1:37:20,17:20:720:17:608:-43.9121,0,-53.9907	1/1:66:0,66:0:0:66:2343:-211.043,-19.868,0	1/1:78:6,72:6:216:72:2495:-205.011,-3.68983,0	1/1:42:0,42:0:0:42:1481:-133.582,-12.6433,0	0/1:141:85,56:85:3024:56:1965:-134.674,0,-229.944	1/1:136:0,136:0:0:136:4806:-432.696,-40.9401,0	1/1:70:0,70:0:0:70:2485:-223.902,-21.0721,0	0/1:132:68,64:68:2402:64:2262:-164.106,0,-176.698	1/1:56:0,56:0:0:56:1990:-179.373,-16.8577,0	1/1:60:0,60:0:0:60:2137:-192.595,-18.0618,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:11:0,11:0:0:11:388:-35.2572,-3.31133,0	0/1:275:158,117:158:5655:117:4183:-293.869,0,-426.282	1/1:61:0,61:0:0:61:2164:-195.025,-18.3628,0	0/1:137:61,76:61:2171:76:2704:-202.361,0,-154.415	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:108:63,45:63:2268:45:1595:-111.328,0,-171.871	1/1:86:0,86:0:0:86:3037:-273.553,-25.8886,0	1/1:165:0,164:0:0:164:5875:-528.5,-49.3689,0	1/1:155:0,155:0:0:155:5479:-493.239,-46.6597,0	1/1:96:0,96:0:0:96:3288:-296.133,-28.8989,0	1/1:47:0,47:0:0:47:1676:-151.126,-14.1484,0	1/1:53:1,52:1:36:52:1844:-162.641,-12.3563,0	0/1:107:68,39:68:2435:39:1388:-93.0087,0,-187.194	0/1:72:28,44:28:1008:44:1562:-119.196,0,-69.3622	0/1:81:37,44:37:1332:44:1568:-117.028,0,-95.799	1/1:108:0,108:0:0:108:3798:-342.02,-32.5112,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:111:0,111:0:0:111:3931:-353.984,-33.4143,0	1/1:32:0,32:0:0:32:1130:-102.006,-9.63296,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:68:0,68:0:0:68:2382:-214.636,-20.47,0	1/1:35:0,35:0:0:35:1252:-112.855,-10.5361,0	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	1/1:67:1,66:1:36:66:2314:-204.911,-16.5707,0	1/1:159:2,157:2:63:157:5623:-500.207,-41.8806,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:59:0,59:0:0:59:2095:-188.819,-17.7608,0	1/1:106:0,106:0:0:106:3754:-338.055,-31.9092,0	1/1:63:0,63:0:0:63:2247:-202.492,-18.9649,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:83:0,83:0:0:83:2923:-263.307,-24.9855,0	1/1:66:0,66:0:0:66:2321:-209.148,-19.868,0	1/1:62:0,62:0:0:62:2196:-197.901,-18.6639,0	1/1:63:0,63:0:0:63:2224:-200.423,-18.9649,0	1/1:167:1,166:1:36:166:5864:-524.278,-46.6737,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:49:16,33:16:576:33:1160:-89.9562,0,-37.4245	0/1:42:20,22:20:720:22:780:-57.8798,0,-52.4855	0/1:156:76,80:76:2728:80:2864:-211.018,0,-198.802	1/1:89:0,89:0:0:89:3164:-284.853,-26.7917,0	0/1:62:25,37:25:896:37:1305:-99.0855,0,-62.2965	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	0/1:81:46,35:46:1656:35:1260:-89.2937,0,-124.945	0/1:78:42,36:42:1508:36:1288:-92.7351,0,-112.534	0/1:110:56,54:56:2004:54:1911:-139.154,0,-147.518	0/1:160:80,80:80:2859:80:2819:-205.782,0,-209.382	0/1:94:56,38:56:2008:38:1353:-93.7724,0,-152.697	1/1:126:0,126:0:0:126:4454:-401.033,-37.9298,0	0/1:194:107,87:107:3840:87:3098:-220.645,0,-287.396	0/1:59:33,26:33:1184:26:924:-65.7169,0,-89.1075	1/1:94:0,94:0:0:94:3332:-300.098,-28.2968,0	1/1:102:0,102:0:0:102:3601:-324.297,-30.7051,0	1/1:69:0,69:0:0:69:2457:-221.383,-20.7711,0	0/1:157:69,88:69:2468:88:3131:-234.755,0,-175.112	0/1:109:67,42:67:2396:42:1493:-101.85,0,-183.085	1/1:67:0,67:0:0:67:2391:-215.408,-20.169,0	1/1:194:1,193:1:36:193:6803:-608.747,-54.8015,0
chr01	13261042	.	T	C	162184	PASS	AB=0.477921;ABP=17.1056;AC=153;AF=0.81383;AN=188;AO=6020;CIGAR=1X;DP=7774;DPB=7774;DPRA=84.4783;EPP=13057.9;EPPR=3798.74;GTI=2;LEN=1;MEANALT=1.06522;MQM=59.9216;MQMR=59.9966;NS=94;NUMALT=1;ODDS=0.589673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212905;QR=62382;RO=1748;RPL=3410;RPP=233.865;RPPR=78.187;RPR=2610;RUN=1;SAF=3410;SAP=233.865;SAR=2610;SRF=997;SRP=78.187;SRR=751;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41:0:0:41:1445:-130.303,-12.3422,0	0/1:116:66,50:66:2364:50:1759:-123.673,0,-178.099	1/1:71:0,71:0:0:71:2518:-226.87,-21.3731,0	1/1:75:1,74:1:36:74:2629:-233.258,-18.979,0	1/1:57:0,57:0:0:57:1993:-179.637,-17.1587,0	1/1:58:0,58:0:0:58:2053:-185.039,-17.4597,0	0/1:110:63,47:63:2247:47:1688:-119.094,0,-169.38	1/1:101:0,101:0:0:101:3596:-323.655,-30.404,0	1/1:135:0,135:0:0:135:4780:-430.356,-40.6391,0	1/1:58:0,58:0:0:58:2067:-186.3,-17.4597,0	1/1:114:0,114:0:0:114:4012:-361.268,-34.3174,0	1/1:122:0,122:0:0:122:4255:-382.025,-36.7257,0	0/1:118:48,70:48:1712:70:2444:-184.691,0,-118.844	1/1:158:0,158:0:0:158:5588:-503.037,-47.5627,0	0/1:104:55,49:55:1950:49:1729:-124.585,0,-144.467	1/1:83:0,83:0:0:83:2907:-261.806,-24.9855,0	1/1:90:0,90:0:0:90:3189:-286.966,-27.0927,0	0/1:83:44,39:44:1522:39:1368:-98.4302,0,-112.282	0/1:93:48,45:48:1707:45:1569:-113.5,0,-125.919	0/1:157:81,76:81:2903:76:2724:-198.141,0,-214.243	0/1:137:72,65:72:2584:65:2308:-166.738,0,-191.568	0/1:37:20,17:20:720:17:580:-41.3794,0,-53.9907	1/1:65:0,65:0:0:65:2300:-207.259,-19.567,0	1/1:73:6,67:6:216:67:2385:-195.115,-2.18468,0	1/1:41:0,41:0:0:41:1461:-131.785,-12.3422,0	0/1:139:86,53:86:3061:53:1876:-127.273,0,-233.875	1/1:134:0,134:0:0:134:4739:-426.67,-40.338,0	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	0/1:128:68,60:68:2440:60:2138:-154.155,0,-181.323	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:59:0,59:0:0:59:2081:-187.556,-17.7608,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:11:0,11:0:0:11:387:-35.1655,-3.31133,0	0/1:271:153,118:153:5488:118:4173:-294.174,0,-412.462	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	0/1:131:58,73:58:2058:73:2604:-195.173,0,-146.055	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:105:60,44:60:2156:44:1569:-109.945,0,-162.752	1/1:80:0,80:0:0:80:2802:-252.417,-24.0824,0	1/1:161:0,161:0:0:161:5689:-512.13,-48.4658,0	1/1:151:0,151:0:0:151:5333:-480.093,-45.4555,0	1/1:96:0,95:0:0:95:3298:-296.679,-28.5979,0	1/1:45:0,45:0:0:45:1587:-143.118,-13.5464,0	1/1:51:1,50:1:36:50:1792:-157.964,-11.7543,0	0/1:103:66,37:66:2368:37:1311:-87.2848,0,-182.372	0/1:68:26,42:26:921:42:1512:-115.905,0,-62.7352	0/1:81:38,43:38:1360:43:1535:-114.059,0,-98.3172	1/1:108:0,108:0:0:108:3814:-343.452,-32.5112,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:109:0,109:0:0:109:3873:-348.754,-32.8123,0	1/1:31:0,31:0:0:31:1101:-99.3984,-9.33193,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:68:0,68:0:0:68:2414:-217.516,-20.47,0	1/1:34:0,34:0:0:34:1214:-109.55,-10.235,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:66:0,66:0:0:66:2333:-210.22,-19.868,0	1/1:159:2,156:2:72:156:5540:-491.891,-41.0858,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:56:0,55:0:0:55:1934:-173.973,-16.5567,0	1/1:102:0,102:0:0:102:3633:-327.174,-30.7051,0	1/1:62:0,62:0:0:62:2201:-198.354,-18.6639,0	1/1:42:0,42:0:0:42:1463:-131.96,-12.6433,0	1/1:84:0,84:0:0:84:2960:-266.632,-25.2865,0	1/1:61:0,61:0:0:61:2153:-194.035,-18.3628,0	1/1:60:0,60:0:0:60:2102:-189.449,-18.0618,0	1/1:65:0,65:0:0:65:2308:-207.98,-19.567,0	1/1:162:0,161:0:0:161:5696:-512.399,-48.4658,0	1/1:11:0,11:0:0:11:388:-35.2568,-3.31133,0	0/1:52:16,36:16:576:36:1265:-98.4889,0,-36.5214	0/1:41:19,22:19:680:22:792:-59.2634,0,-49.1869	0/1:153:78,75:78:2757:75:2650:-192.684,0,-202.312	1/1:88:0,88:0:0:88:3141:-282.914,-26.4906,0	0/1:64:26,38:26:928:38:1347:-102.264,0,-64.5723	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	0/1:81:46,35:46:1643:35:1247:-88.1469,0,-123.774	0/1:80:44,36:44:1571:36:1279:-91.3219,0,-117.598	0/1:111:55,55:55:1964:55:1963:-143.609,0,-143.7	0/1:159:79,80:79:2823:80:2734:-198.431,0,-206.445	0/1:93:55,38:55:1959:38:1333:-92.2718,0,-148.589	1/1:124:0,124:0:0:124:4360:-392.577,-37.3277,0	0/1:194:103,91:103:3656:91:3194:-229.253,0,-270.844	0/1:59:33,26:33:1180:26:924:-65.7169,0,-88.7473	1/1:92:0,92:0:0:92:3254:-293.08,-27.6948,0	1/1:101:0,101:0:0:101:3562:-320.786,-30.404,0	1/1:68:0,68:0:0:68:2404:-216.616,-20.47,0	0/1:151:63,88:63:2252:88:3104:-234.129,0,-157.488	0/1:107:65,42:65:2332:42:1488:-102.002,0,-177.929	1/1:68:0,68:0:0:68:2403:-216.516,-20.47,0	1/1:195:0,195:0:0:195:6896:-620.711,-58.7009,0
chr01	13476967	.	TTTGGTC	TTTGGTT,CTTAGTT	150503	PASS	AB=0.531365,0.465607;ABP=26.1673,30.7929;AC=151,32;AF=0.820652,0.173913;AN=184;AO=5696,1262;CIGAR=6M1X,1X2M1X2M1X;DP=6993;DPB=6993.57;DPRA=0,1.18436;EPP=12371.7,2743.41;EPPR=7.35324;GTI=1;LEN=1,7;MEANALT=1.69565,2.28571;MQM=59.9793,54.3637;MQMR=60;NS=92;NUMALT=2;ODDS=1.34243;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=202029,44727;QR=70;RO=2;RPL=5696,1262;RPP=12371.7,2743.41;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12371.7,2743.41;SAR=5696,1262;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28,0:0:0:28,0:989,0:-89.322,-8.42884,0,-89.322,-8.42884,-89.322	1/2:32:0,16,16:0:0:16,16:576,567:-93.4271,-46.4252,-41.6087,-47.3585,0,-42.542	1/1:109:0,109,0:0:0:109,0:3888,0:-350.114,-32.8123,0,-350.114,-32.8123,-350.114	1/1:144:0,144,0:0:0:144,0:5108,0:-459.857,-43.3483,0,-459.857,-43.3483,-459.857	1/1:38:0,38,0:0:0:38,0:1345,0:-121.348,-11.4391,0,-121.348,-11.4391,-121.348	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/2:70:0,33,35:0:0:33,35:1184,1231:-196.516,-99.9371,-90.0031,-96.5746,0,-86.0385	1/1:102:0,102,0:0:0:102,0:3596,0:-323.844,-30.7051,0,-323.844,-30.7051,-323.844	1/1:56:0,56,0:0:0:56,0:1993,0:-179.642,-16.8577,0,-179.642,-16.8577,-179.642	1/1:91:0,90,0:0:0:90,0:3152,0:-283.583,-27.0927,0,-283.583,-27.0927,-283.583	1/1:60:0,60,0:0:0:60,0:2141,0:-192.956,-18.0618,0,-192.956,-18.0618,-192.956	1/1:78:0,78,0:0:0:78,0:2759,0:-248.534,-23.4803,0,-248.534,-23.4803,-248.534	1/2:63:0,31,32:0:0:31,32:1112,1135:-183.275,-92.5714,-83.2395,-91.0594,0,-81.4265	1/1:74:0,74,0:0:0:74,0:2645,0:-238.287,-22.2762,0,-238.287,-22.2762,-238.287	1/2:52:0,23,29:0:0:23,29:790,1026:-147.978,-83.8366,-76.9129,-64.4888,0,-55.7589	1/1:67:0,67,0:0:0:67,0:2362,0:-212.836,-20.169,0,-212.836,-20.169,-212.836	1/1:41:0,41,0:0:0:41,0:1427,0:-128.712,-12.3422,0,-128.712,-12.3422,-128.712	1/2:26:0,22,4:0:0:22,4:762,141:-73.7203,-11.7985,-5.17587,-62.2724,0,-61.0683	1/2:40:0,21,18:0:0:21,18:722,643:-109.968,-51.3412,-45.0196,-58.6344,0,-53.2158	1/2:91:0,48,42:0:0:48,42:1724,1503:-262.99,-122.351,-107.902,-140.679,0,-128.036	1/2:90:0,45,45:0:0:45,45:1612,1582:-259.917,-128.447,-114.9,-131.824,0,-118.277	1/2:63:0,23,40:0:0:23,40:814,1426:-182.847,-116.544,-109.62,-66.6577,0,-54.6165	1/1:72:0,72,0:0:0:72,0:2542,0:-229.028,-21.6742,0,-229.028,-21.6742,-229.028	1/1:12:0,11,1:0:0:11,1:384,36:-34.5362,-3.31133,0,-31.6025,-0.0191874,-31.3015	1/1:49:0,49,0:0:0:49,0:1737,0:-156.613,-14.7505,0,-156.613,-14.7505,-156.613	1/2:152:0,91,61:0:0:91,61:3200,2170:-437.433,-176.96,-149.567,-260.826,0,-242.463	1/1:167:0,165,0:0:0:165,0:5879,0:-528.899,-49.67,0,-528.899,-49.67,-528.899	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/2:200:0,108,91:0:0:108,91:3815,3236:-574.192,-263.512,-231.001,-310.753,0,-283.359	1/1:153:1,150,0:1:36:150,0:5258,0:-469.774,-42.2071,0,-470.075,-45.1545,-473.013	1/1:60:0,60,0:0:0:60,0:2156,0:-194.307,-18.0618,0,-194.307,-18.0618,-194.307	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:13:0,13,0:0:0:13,0:459,0:-41.6441,-3.91339,0,-41.6441,-3.91339,-41.6441	1/2:5:0,2,3:0:0:2,3:72,107:-14.932,-9.05546,-8.4534,-6.23466,0,-5.33157	1/1:6:0,6,0:0:0:6,0:216,0:-19.7822,-1.80618,0,-19.7822,-1.80618,-19.7822	0/1:6:1,5,0:1:34:5,0:180,0:-14.7459,0,-1.59273,-15.0469,-3.09788,-17.8016	1/2:153:0,69,84:0:0:69,84:2424,2961:-437.552,-240.264,-219.493,-197.639,0,-172.352	1/1:86:0,86,0:0:0:86,0:3028,0:-272.746,-25.8886,0,-272.746,-25.8886,-272.746	1/2:70:0,40,30:0:0:40,30:1420,1076:-203.398,-87.6977,-75.6565,-116.056,0,-107.025	.:.:.:.:.:.:.:.	1/2:77:0,45,32:0:0:45,32:1586,1127:-220.958,-91.8299,-78.2835,-129.48,0,-119.847	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/1:125:0,123,0:0:0:123,0:4348,0:-391.197,-37.0267,0,-391.197,-37.0267,-391.197	1/1:43:0,43,0:0:0:43,0:1521,0:-137.181,-12.9443,0,-137.181,-12.9443,-137.181	1/1:52:0,52,0:0:0:52,0:1849,0:-166.688,-15.6536,0,-166.688,-15.6536,-166.688	1/1:53:0,53,0:0:0:53,0:1904,0:-171.638,-15.9546,0,-171.638,-15.9546,-171.638	1/1:128:0,127,0:0:0:127,0:4537,0:-408.136,-38.2308,0,-408.136,-38.2308,-408.136	1/2:110:0,59,51:0:0:59,51:2082,1815:-316.938,-148.032,-130.272,-169.259,0,-153.906	1/2:64:0,34,29:0:0:34,29:1194,1030:-181.024,-83.8507,-73.6157,-97.1666,0,-88.4368	1/2:123:0,73,50:0:0:73,50:2601,1772:-356.288,-144.281,-122.306,-212.362,0,-197.31	1/1:62:0,61,0:0:0:61,0:2162,0:-194.485,-18.3628,0,-194.485,-18.3628,-194.485	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:87:0,87,0:0:0:87,0:3109,0:-280.035,-26.1896,0,-280.035,-26.1896,-280.035	1/1:47:0,47,0:0:0:47,0:1684,0:-151.847,-14.1484,0,-151.847,-14.1484,-151.847	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:137:0,137,0:0:0:137,0:4868,0:-438.269,-41.2411,0,-438.269,-41.2411,-438.269	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:5:0,5,0:0:0:5,0:165,0:-15.1736,-1.50515,0,-15.173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chr01	13580030	.	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chr01	13580037	.	ACGAG	GCGAG,GTGAA	156487	PASS	AB=0.474124,0.517516;ABP=17.6193,9.70452;AC=154,34;AF=0.819149,0.180851;AN=188;AO=4639,1307;CIGAR=1X4M,2X2M1X;DP=6011;DPB=6011;DPRA=21.5341,1.52169;EPP=2455.58,751.048;EPPR=11.6962;GTI=4;LEN=1,5;MEANALT=1.97849,2.59459;MQM=59.9187,59.2318;MQMR=60;NS=94;NUMALT=2;ODDS=0.359787;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165242,45274;QR=139;RO=4;RPL=1175,318;RPP=2455.58,751.048;RPPR=11.6962;RPR=3464,989;RUN=1,1;SAF=4639,1307;SAP=10076.5,2841.12;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29,0:0:0:29,0:1032,0:-93.1935,-8.72987,0,-93.1935,-8.72987,-93.1935	1/2:86:0,30,55:0:0:30,55:1055,1912:-241.39,-155.511,-146.48,-85.9569,0,-69.4003	1/1:74:0,74,0:0:0:74,0:2627,0:-236.678,-22.2762,0,-236.678,-22.2762,-236.678	1/1:126:0,125,0:0:0:125,0:4443,0:-399.682,-37.6288,0,-399.682,-37.6288,-399.682	1/1:54:0,52,0:0:0:52,0:1860,0:-167.373,-15.6536,0,-167.373,-15.6536,-167.373	1/1:40:0,40,0:0:0:40,0:1420,0:-128.097,-12.0412,0,-128.097,-12.0412,-128.097	1/2:125:1,79,45:1:36:79,45:2814,1509:-348.289,-119.215,-98.3714,-226.42,0,-215.811	1/1:96:0,95,0:0:0:95,0:3384,0:-304.356,-28.5979,0,-304.356,-28.5979,-304.356	1/1:52:0,51,0:0:0:51,0:1812,0:-162.998,-15.3525,0,-162.998,-15.3525,-162.998	1/1:63:0,63,0:0:0:63,0:2239,0:-201.773,-18.9649,0,-201.773,-18.9649,-201.773	1/1:21:0,21,0:0:0:21,0:743,0:-67.1933,-6.32163,0,-67.1933,-6.32163,-67.1933	1/1:45:0,45,0:0:0:45,0:1603,0:-144.559,-13.5464,0,-144.559,-13.5464,-144.559	1/2:27:0,13,13:0:0:13,13:464,454:-74.7409,-36.9102,-32.9968,-37.8245,0,-33.9111	1/1:45:0,45,0:0:0:45,0:1560,0:-140.685,-13.5464,0,-140.685,-13.5464,-140.685	1/2:33:0,16,17:0:0:16,17:576,580:-94.3736,-47.3657,-42.5492,-47.3585,0,-42.241	1/1:25:0,24,0:0:0:24,0:864,0:-77.7227,-7.22472,0,-77.7227,-7.22472,-77.7227	1/1:31:0,31,0:0:0:31,0:1103,0:-99.5798,-9.33193,0,-99.5798,-9.33193,-99.5798	1/2:29:0,21,7:0:0:21,7:753,247:-81.5825,-20.1573,-13.8356,-61.4703,0,-59.3631	1/2:15:0,10,5:0:0:10,5:352,180:-43.697,-15.0469,-12.0366,-29.0073,0,-27.5021	1/2:115:0,41,73:0:0:41,73:1460,2562:-327.483,-208.483,-196.141,-118.994,0,-97.0189	1/2:96:0,37,59:0:0:37,59:1328,2028:-273.308,-164.977,-153.839,-108.684,0,-90.9234	1/2:88:0,25,63:0:0:25,63:896,2198:-252.129,-179.05,-171.524,-73.4346,0,-54.4697	1/1:30:0,30,0:0:0:30,0:1068,0:-96.4321,-9.0309,0,-96.4321,-9.0309,-96.4321	1/1:81:0,79,1:0:0:79,1:2802,36:-252.046,-23.7814,0,-249.108,-20.844,-248.807	1/1:104:0,102,0:0:0:102,0:3615,0:-325.214,-30.7051,0,-325.214,-30.7051,-325.214	1/2:227:0,122,102:0:0:122,102:4337,3507:-637.861,-284.431,-247.705,-353.451,0,-322.746	1/1:185:0,181,0:0:0:181,0:6443,0:-579.621,-54.4864,0,-579.621,-54.4864,-579.621	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:209:0,92,114:0:0:92,114:3276,3907:-583,-315.988,-288.293,-267.031,0,-232.714	1/1:111:0,110,0:0:0:110,0:3928,0:-353.374,-33.1133,0,-353.374,-33.1133,-353.374	1/1:96:0,95,0:0:0:95,0:3396,0:-305.251,-28.5979,0,-305.251,-28.5979,-305.251	1/1:4:0,4,0:0:0:4,0:131,0:-12.1135,-1.20412,0,-12.1135,-1.20412,-12.1135	1/1:6:0,4,0:0:0:4,0:140,0:-12.6551,-1.20412,0,-12.6551,-1.20412,-12.6551	1/2:3:0,1,2:0:0:1,2:36,63:-8.33349,-5.38109,-5.08006,-3.29724,0,-2.69518	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:94:1,53,40:1:36:53,40:1879,1401:-263.767,-110.987,-97.9697,-150.136,0,-141.033	1/1:157:0,156,0:0:0:156,0:5589,0:-502.832,-46.9607,0,-502.832,-46.9607,-502.832	1/2:21:0,12,9:0:0:12,9:432,313:-60.9745,-25.718,-22.1056,-35.6088,0,-32.8996	2/2:3:0,0,3:0:0:0,3:0,107:-9.98217,-9.98217,-9.98217,-0.90309,-0.90309,0	1/2:103:0,54,48:0:0:54,48:1934,1665:-293.008,-135.278,-119.023,-157.788,0,-143.338	1/1:21:0,20,0:0:0:20,0:712,0:-64.0532,-6.0206,0,-64.0532,-6.0206,-64.0532	1/1:81:0,79,0:0:0:79,0:2836,0:-255.177,-23.7814,0,-255.177,-23.7814,-255.177	1/1:30:0,29,0:0:0:29,0:1028,0:-92.5796,-8.72987,0,-92.5796,-8.72987,-92.5796	1/1:24:0,24,0:0:0:24,0:848,0:-76.635,-7.22472,0,-76.635,-7.22472,-76.635	1/1:58:0,55,0:0:0:55,0:1960,0:-176.407,-16.5567,0,-176.407,-16.5567,-176.407	1/1:60:0,60,0:0:0:60,0:2118,0:-190.873,-18.0618,0,-190.873,-18.0618,-190.873	1/2:137:0,68,68:0:0:68,68:2413,2353:-387.671,-191.154,-170.684,-196.508,0,-176.038	1/2:55:0,23,32:0:0:23,32:816,1114:-157.414,-90.9281,-84.0044,-66.838,0,-57.2051	1/2:79:0,41,38:0:0:41,38:1468,1324:-227.45,-107.728,-95.3859,-120.074,0,-108.635	1/1:167:0,167,0:0:0:167,0:5995,0:-539.64,-50.272,0,-539.64,-50.272,-539.64	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:107:0,104,1:0:0:104,1:3723,36:-334.953,-31.3071,0,-332.015,-28.3481,-331.714	1/1:33:0,33,0:0:0:33,0:1161,0:-104.795,-9.93399,0,-104.795,-9.93399,-104.795	1/1:16:0,16,0:0:0:16,0:563,0:-50.993,-4.81648,0,-50.993,-4.81648,-50.993	1/1:82:0,81,0:0:0:81,0:2879,0:-258.982,-24.3834,0,-258.982,-24.3834,-258.982	1/1:17:0,16,0:0:0:16,0:567,0:-51.0764,-4.81648,0,-51.0764,-4.81648,-51.0764	1/1:4:0,4,0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chr01	13915408	.	ACAG	CCAG,CCAA	182229	PASS	AB=0.488722,0.505865;ABP=6.68384,4.00363;AC=156,32;AF=0.829787,0.170213;AN=188;AO=6732,1692;CIGAR=1X3M,1X2M1X;DP=8476;DPB=8476;DPRA=45.5591,1.38106;EPP=14569.3,3659.79;EPPR=16.0391;GTI=4;LEN=1,4;MEANALT=1.8172,2.48571;MQM=59.9883,59.9935;MQMR=60;NS=94;NUMALT=2;ODDS=1.2037;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=239281,57923;QR=190;RO=6;RPL=21,7;RPP=14439.5,3616.59;RPPR=16.0391;RPR=6711,1685;RUN=1,1;SAF=15,5;SAP=14491.4,3633.84;SAR=6717,1687;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22,0:0:0:22,0:754,0:-68.1733,-6.62266,0,-68.1733,-6.62266,-68.1733	1/2:87:0,47,40:0:0:47,40:1688,1382:-250.341,-112.634,-98.4854,-138.059,0,-126.017	1/1:73:0,72,1:0:0:72,1:2536,30:-228.134,-21.6742,0,-225.736,-18.9756,-225.435	1/1:224:0,223,0:0:0:223,0:7933,0:-713.639,-67.1297,0,-713.639,-67.1297,-713.639	1/1:34:0,34,0:0:0:34,0:1205,0:-108.754,-10.235,0,-108.754,-10.235,-108.754	1/1:42:0,42,0:0:0:42,0:1495,0:-134.844,-12.6433,0,-134.844,-12.6433,-134.844	1/2:218:0,100,117:0:0:100,117:3572,3949:-611.354,-320.117,-290.014,-291.305,0,-256.084	1/1:131:0,131,0:0:0:131,0:4653,0:-418.742,-39.4349,0,-418.742,-39.4349,-418.742	1/1:105:0,105,0:0:0:105,0:3755,0:-338.15,-31.6082,0,-338.15,-31.6082,-338.15	1/1:132:0,131,0:0:0:131,0:4656,0:-418.989,-39.4349,0,-418.989,-39.4349,-418.989	1/1:65:0,64,0:0:0:64,0:2268,0:-204.129,-19.2659,0,-204.129,-19.2659,-204.129	1/1:74:0,74,0:0:0:74,0:2588,0:-233.169,-22.2762,0,-233.169,-22.2762,-233.169	1/2:67:0,26,41:0:0:26,41:928,1354:-185.47,-109.805,-101.978,-76.0115,0,-63.6692	1/1:78:0,78,0:0:0:78,0:2755,0:-248.191,-23.4803,0,-248.191,-23.4803,-248.191	1/2:54:0,26,27:0:0:26,27:917,919:-149.203,-74.5319,-66.7052,-74.6583,0,-66.5305	1/1:56:0,55,0:0:0:55,0:1925,0:-173.185,-16.5567,0,-173.185,-16.5567,-173.185	1/1:73:0,73,0:0:0:73,0:2597,0:-233.977,-21.9752,0,-233.977,-21.9752,-233.977	1/2:67:0,38,29:0:0:38,29:1333,986:-188.801,-80.3169,-68.8778,-108.828,0,-100.099	1/2:51:0,25,25:0:0:25,25:879,839:-139.528,-67.9705,-60.4448,-71.5799,0,-64.0541	1/2:257:0,129,128:0:0:129,128:4574,4422:-732.275,-359.633,-320.801,-372.992,0,-334.46	1/2:145:0,79,65:0:0:79,65:2828,2257:-414.17,-183.544,-159.763,-230.697,0,-211.13	1/2:94:0,27,65:0:0:27,65:956,2176:-254.057,-176.178,-168.05,-77.8685,0,-58.3016	1/1:87:0,87,0:0:0:87,0:3120,0:-281.026,-26.1896,0,-281.026,-26.1896,-281.026	1/1:117:0,111,4:0:0:111,4:3960,136:-356.243,-33.4143,0,-345.213,-22.3964,-344.009	1/1:46:0,46,0:0:0:46,0:1648,0:-148.609,-13.8474,0,-148.609,-13.8474,-148.609	1/2:176:0,94,82:0:0:94,82:3372,2824:-504.764,-229.718,-201.421,-275.398,0,-250.713	1/1:117:0,117,0:0:0:117,0:4179,0:-376.292,-35.2205,0,-376.292,-35.2205,-376.292	1/1:38:0,38,0:0:0:38,0:1333,0:-120.268,-11.4391,0,-120.268,-11.4391,-120.268	1/1:224:0,223,0:0:0:223,0:7937,0:-714.074,-67.1297,0,-714.074,-67.1297,-714.074	1/1:134:0,133,0:0:0:133,0:4749,0:-427.208,-40.037,0,-427.208,-40.037,-427.208	1/1:118:0,118,0:0:0:118,0:4175,0:-375.933,-35.5215,0,-375.933,-35.5215,-375.933	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	2/2:2:0,0,2:0:0:0,2:0,71:-6.74206,-6.74206,-6.74206,-0.60206,-0.60206,0	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:14:0,13,0:0:0:13,0:464,0:-41.8863,-3.91339,0,-41.8863,-3.91339,-41.8863	1/2:172:0,81,91:0:0:81,91:2834,3184:-489.96,-259.395,-235.011,-230.915,0,-203.521	1/1:140:0,140,0:0:0:140,0:4990,0:-449.244,-42.1442,0,-449.244,-42.1442,-449.244	1/2:89:0,51,38:0:0:51,38:1764,1306:-249.737,-106.396,-91.0439,-143.685,0,-132.246	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:173:0,78,94:0:0:78,94:2783,3185:-485.109,-258.228,-234.747,-226.87,0,-198.574	1/1:28:0,28,0:0:0:28,0:967,0:-87.3378,-8.42884,0,-87.3378,-8.42884,-87.3378	1/1:86:0,86,0:0:0:86,0:3080,0:-277.428,-25.8886,0,-277.428,-25.8886,-277.428	1/1:96:0,96,0:0:0:96,0:3383,0:-304.686,-28.8989,0,-304.686,-28.8989,-304.686	1/1:71:0,70,0:0:0:70,0:2483,0:-223.433,-21.0721,0,-223.433,-21.0721,-223.433	1/1:66:0,64,0:0:0:64,0:2292,0:-206.182,-19.2659,0,-206.182,-19.2659,-206.182	1/1:92:0,92,0:0:0:92,0:3279,0:-295.33,-27.6948,0,-295.33,-27.6948,-295.33	1/2:120:0,60,57:0:0:60,57:2148,1926:-331.335,-156.156,-138.094,-175.226,0,-158.067	1/2:126:0,73,53:0:0:73,53:2612,1772:-356.811,-143.802,-121.827,-213.353,0,-197.398	1/2:102:0,44,58:0:0:44,58:1565,1985:-289.009,-161.464,-148.219,-127.894,0,-110.435	1/1:181:1,179,0:1:36:179,0:6384,0:-571.111,-50.887,0,-571.412,-53.8844,-574.349	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:128:0,128,0:0:0:128,0:4561,0:-410.656,-38.5318,0,-410.656,-38.5318,-410.656	1/1:60:0,60,0:0:0:60,0:2144,0:-193.228,-18.0618,0,-193.228,-18.0618,-193.228	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:107:0,106,0:0:0:106,0:3779,0:-339.947,-31.9092,0,-339.947,-31.9092,-339.947	1/1:57:0,57,0:0:0:57,0:2024,0:-182.43,-17.1587,0,-182.43,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chr01	14126257	.	T	A	277054	PASS	AB=0.529118;ABP=38.4187;AC=156;AF=0.829787;AN=188;AO=10208;CIGAR=1X;DP=12498;DPB=12498;DPRA=0;EPP=22169.4;EPPR=4943.11;GTI=0;LEN=1;MEANALT=1.12766;MQM=59.9777;MQMR=60;NS=94;NUMALT=1;ODDS=2.23676;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=359498;QR=80901;RO=2275;RPL=4592;RPP=226.066;RPPR=117.94;RPR=5616;RUN=1;SAF=4592;SAP=226.066;SAR=5616;SRF=964;SRP=117.94;SRR=1311;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1481:-133.584,-12.6433,0	0/1:247:106,141:106:3750:141:4984:-373.422,0,-263.346	1/1:211:0,211:0:0:211:7441:-669.738,-63.5173,0	1/1:227:0,226:0:0:226:7952:-715.353,-68.0328,0	1/1:56:0,54:0:0:54:1902:-171.097,-16.2556,0	1/1:52:0,52:0:0:52:1843:-166.15,-15.6536,0	0/1:192:87,105:87:3084:105:3676:-273.248,0,-219.99	1/1:171:0,171:0:0:171:6036:-543.35,-51.4761,0	1/1:113:0,113:0:0:113:3974:-357.854,-34.0164,0	1/1:121:0,121:0:0:121:4275:-384.926,-36.4246,0	1/1:228:0,228:0:0:228:8026:-722.343,-68.6348,0	1/1:138:0,138:0:0:138:4808:-432.883,-41.5421,0	0/1:164:83,81:83:2955:81:2855:-207.818,0,-216.815	1/1:174:0,174:0:0:174:6135:-552.255,-52.3792,0	0/1:125:53,72:53:1858:72:2533:-190.593,0,-129.867	1/1:122:0,122:0:0:122:4286:-385.922,-36.7257,0	1/1:185:0,184:0:0:184:6441:-579.429,-55.3895,0	0/1:122:59,63:59:2107:63:2214:-162.797,0,-153.173	0/1:123:48,75:48:1690:75:2641:-200.91,0,-115.358	0/1:263:136,127:136:4856:127:4448:-321.327,0,-358.021	0/1:196:103,93:103:3635:93:3265:-235.069,0,-268.354	0/1:53:23,30:23:807:30:1063:-80.0262,0,-56.9946	1/1:69:0,69:0:0:69:2420:-218.037,-20.7711,0	1/1:122:9,113:9:320:113:3996:-330.689,-7.5833,0	1/1:63:0,63:0:0:63:2238:-201.683,-18.9649,0	0/1:178:84,94:84:3000:94:3330:-246.335,0,-216.649	1/1:210:0,210:0:0:210:7413:-667.227,-63.2163,0	1/1:76:0,76:0:0:76:2613:-235.416,-22.8783,0	1/1:245:0,245:0:0:245:8657:-779.14,-73.7524,0	1/1:168:0,167:0:0:167:5912:-531.967,-50.272,0	1/1:164:0,164:0:0:164:5822:-524.095,-49.3689,0	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	1/1:10:0,10:0:0:10:345:-31.3817,-3.0103,0	0/1:5:2,3:2:72:3:99:-7.73143,0,-5.33157	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:328:167,160:167:5945:160:5637:-408.66,0,-436.361	1/1:119:0,119:0:0:119:4181:-376.478,-35.8226,0	0/1:154:76,78:76:2716:78:2728:-199.405,0,-198.325	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:325:147,178:147:5231:178:6307:-469.892,0,-373.093	1/1:103:0,103:0:0:103:3605:-324.66,-31.0061,0	1/1:139:1,138:1:27:138:4822:-431.441,-39.1434,0	1/1:140:0,139:0:0:139:4852:-436.483,-41.8432,0	1/1:123:0,123:0:0:123:4311:-388.173,-37.0267,0	1/1:94:0,91:0:0:91:3209:-288.673,-27.3937,0	1/1:198:0,198:0:0:198:6970:-627.361,-59.6039,0	0/1:162:64,98:64:2279:98:3478:-264.466,0,-156.605	0/1:102:47,55:47:1688:55:1950:-145.069,0,-121.502	0/1:150:62,88:62:2194:88:3124:-236.234,0,-152.568	1/1:136:0,136:0:0:136:4875:-438.901,-40.9401,0	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	1/1:218:0,218:0:0:218:7622:-685.802,-65.6245,0	1/1:65:0,64:0:0:64:2268:-204.022,-19.2659,0	1/1:26:0,26:0:0:26:914:-82.5744,-7.82678,0	1/1:217:0,217:0:0:217:7618:-685.652,-65.3235,0	1/1:58:0,58:0:0:58:2041:-183.96,-17.4597,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:35:17,18:17:612:18:644:-47.7545,0,-44.8774	1/1:104:0,104:0:0:104:3660:-329.605,-31.3071,0	1/1:314:1,313:1:36:313:11112:-996.382,-90.9251,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:127:0,127:0:0:127:4482:-403.552,-38.2308,0	1/1:216:0,215:0:0:215:7586:-682.429,-64.7215,0	1/1:104:0,104:0:0:104:3657:-329.337,-31.3071,0	1/1:113:0,113:0:0:113:3944:-355.156,-34.0164,0	1/1:164:0,163:0:0:163:5741:-516.451,-49.0679,0	1/1:131:1,130:1:36:130:4624:-412.726,-35.8367,0	1/1:91:0,91:0:0:91:3170:-285.516,-27.3937,0	1/1:125:0,125:0:0:125:4427:-398.603,-37.6288,0	1/1:201:0,201:0:0:201:7089:-638.08,-60.507,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:89:43,46:43:1544:46:1628:-120.017,0,-112.461	0/1:104:57,47:57:2022:47:1644:-116.938,0,-150.944	0/1:169:69,100:69:2441:100:3519:-266.045,0,-169.07	1/1:208:0,208:0:0:208:7336:-660.299,-62.6142,0	0/1:93:43,50:43:1516:50:1756:-130.325,0,-108.735	1/1:172:0,172:0:0:172:6113:-550.276,-51.7772,0	1/1:18:0,18:0:0:18:627:-56.7544,-5.41854,0	0/1:153:70,83:70:2489:83:2928:-217.697,0,-178.204	0/1:179:71,108:71:2540:108:3755:-284.267,0,-174.967	0/1:222:114,108:114:4060:108:3814:-276.632,0,-298.758	0/1:126:57,69:57:2016:69:2435:-181.474,0,-143.781	0/1:123:61,62:61:2183:62:2140:-155.838,0,-159.709	1/1:158:0,157:0:0:157:5472:-492.255,-47.2617,0	0/1:198:97,101:97:3463:101:3549:-260.019,0,-252.278	0/1:73:45,27:45:1603:27:940:-62.88,0,-122.526	1/1:137:0,137:0:0:137:4763:-428.836,-41.2411,0	1/1:127:0,127:0:0:127:4448:-400.496,-38.2308,0	1/1:175:0,175:0:0:175:6154:-553.969,-52.6803,0	0/1:219:93,126:93:3311:126:4458:-335.469,0,-232.284	0/1:133:76,57:76:2707:57:2005:-140.685,0,-203.837	1/1:101:0,101:0:0:101:3530:-317.912,-30.404,0	1/1:207:1,206:1:36:206:7330:-656.156,-58.7149,0
chr01	14229612	.	G	A	16128.4	PASS	AB=0.487695;ABP=5.62894;AC=32;AF=0.170213;AN=188;AO=977;CIGAR=1X;DP=5404;DPB=5404;DPRA=1.12434;EPP=2115.86;EPPR=9570.57;GTI=0;LEN=1;MEANALT=1;MQM=59.9918;MQMR=59.9995;NS=94;NUMALT=1;ODDS=4.77956;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34950;QR=157670;RO=4426;RPL=0;RPP=2124.54;RPPR=9587.91;RPR=977;RUN=1;SAF=1;SAP=2115.86;SAR=976;SRF=2;SRP=9596.58;SRR=4424;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.597	0/1:29:19,10:19:684:10:360:-24.0144,0,-53.1605	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.384	0/0:107:107,0:107:3820:0:0:0,-32.2102,-343.995	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:37:15,22:15:540:22:792:-60.4676,0,-37.7984	0/0:87:87,0:87:3088:0:0:0,-26.1896,-278.147	0/0:69:69,0:69:2431:0:0:0,-20.7711,-219.044	0/0:33:33,0:33:1156:0:0:0,-9.93399,-104.344	0/0:58:58,0:58:2070:0:0:0,-17.4597,-186.569	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/1:55:29,26:29:1031:26:936:-68.0028,0,-76.546	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.732	0/1:53:30,23:30:1039:23:824:-58.5287,0,-77.8611	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.78	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/1:27:10,17:10:360:17:612:-47.2856,0,-24.6165	0/1:40:18,22:18:644:22:792:-59.5645,0,-46.2494	0/1:51:20,31:20:716:31:1112:-85.0388,0,-49.4152	0/1:67:26,41:26:911:41:1467:-112.156,0,-62.136	0/1:72:34,38:34:1216:38:1355:-100.576,0,-88.0724	0/0:66:66,0:66:2320:0:0:0,-19.868,-209.059	0/0:38:37,1:37:1319:1:36:0,-7.84086,-115.413	0/0:43:43,0:43:1518:0:0:0,-12.9443,-136.912	0/1:104:66,38:66:2372:38:1356:-91.0334,0,-182.431	0/0:109:109,0:109:3871:0:0:0,-32.8123,-348.585	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:132:132,0:132:4723:0:0:0,-39.736,-425.228	0/0:74:74,0:74:2623:0:0:0,-22.2762,-236.315	0/0:62:61,1:61:2169:1:21:0,-16.5639,-193.375	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:123:55,68:55:1961:68:2448:-183.548,0,-139.737	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.647	0/1:54:26,28:26:936:28:991:-73.2479,0,-68.3038	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:87:37,50:37:1312:50:1787:-134.922,0,-92.1921	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/0:83:83,0:83:2936:0:0:0,-24.9855,-264.474	0/0:43:43,0:43:1518:0:0:0,-12.9443,-136.912	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:60:59,1:59:2112:1:36:0,-14.4635,-186.751	0/1:136:90,46:90:3214:46:1633:-106.317,0,-248.542	0/1:68:35,33:35:1247:33:1188:-86.7586,0,-92.064	0/1:76:45,31:45:1612:31:1112:-77.5131,0,-122.492	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:77:77,0:77:2732:0:0:0,-23.1793,-246.121	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:97:97,0:97:3437:0:0:0,-29.1999,-309.544	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/0:82:80,2:80:2831:2:72:0,-17.8477,-248.191	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:108:108,0:108:3871:0:0:0,-32.5112,-348.584	0/0:157:157,0:157:5609:0:0:0,-47.2617,-504.931	0/0:47:46,1:46:1648:1:36:0,-10.5501,-145.01	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/0:77:76,0:76:2716:0:0:0,-22.8783,-244.324	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/0:32:32,0:32:1126:0:0:0,-9.63296,-101.647	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:58:34,24:34:1216:24:849:-59.2681,0,-92.2868	0/1:45:29,16:29:1040:16:576:-38.6286,0,-80.368	0/1:78:45,33:45:1612:33:1175:-82.5766,0,-121.89	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:106:59,47:59:2097:47:1670:-118.677,0,-157.089	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3671	0/1:58:26,32:26:932:32:1148:-86.1701,0,-66.7391	0/1:54:16,38:16:572:38:1348:-105.362,0,-35.5578	0/1:64:44,20:44:1580:20:720:-45.8629,0,-123.226	0/1:40:23,17:23:824:17:608:-43.0108,0,-62.4421	0/1:58:31,27:31:1077:27:972:-70.3382,0,-79.7738	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:66:28,38:28:981:38:1364:-103.193,0,-68.7331	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:40:40,0:40:1406:0:0:0,-12.0412,-126.836	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.374	0/1:188:93,95:93:3306:95:3398:-249.44,0,-241.166	0/1:57:18,39:18:621:39:1404:-109.501,0,-39.0523	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.772	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091
chr01	14323456	.	C	T	179194	PASS	AB=0.47413;ABP=27.7279;AC=155;AF=0.833333;AN=186;AO=8292;CIGAR=1X;DP=10548;DPB=10548;DPRA=0;EPP=17852.9;EPPR=4755.18;GTI=3;LEN=1;MEANALT=1.04301;MQM=59.9824;MQMR=59.9623;NS=93;NUMALT=1;ODDS=0.982939;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=296405;QR=80377;RO=2252;RPL=8274;RPP=17852.9;RPPR=4755.18;RPR=18;RUN=1;SAF=0;SAP=18008.9;SAR=8292;SRF=0;SRP=4893.17;SRR=2252;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:953:-86.0833,-8.12781,0	0/1:179:83,96:83:2984:96:3428:-254.85,0,-214.907	1/1:123:0,123:0:0:123:4403:-396.441,-37.0267,0	1/1:192:0,192:0:0:192:6882:-619.445,-57.7978,0	1/1:103:0,103:0:0:103:3658:-329.423,-31.0061,0	1/1:98:0,98:0:0:98:3490:-314.309,-29.5009,0	0/1:156:86,69:86:3084:69:2465:-175.219,0,-230.904	1/1:127:0,127:0:0:127:4533:-408.137,-38.2308,0	1/1:80:0,80:0:0:80:2861:-257.726,-24.0824,0	1/1:101:0,101:0:0:101:3588:-323.125,-30.404,0	1/1:123:0,123:0:0:123:4390:-395.273,-37.0267,0	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	0/1:103:54,49:54:1912:49:1760:-127.678,0,-141.349	1/1:107:0,107:0:0:107:3844:-346.137,-32.2102,0	0/1:81:46,35:46:1643:35:1260:-89.3221,0,-123.774	1/1:61:0,61:0:0:61:2161:-194.755,-18.3628,0	1/1:84:0,84:0:0:84:3013:-271.401,-25.2865,0	0/1:81:39,42:39:1381:42:1512:-111.991,0,-100.203	0/1:60:29,31:29:1044:31:1116:-82.6899,0,-76.213	0/1:311:155,156:155:5521:156:5602:-410.679,0,-403.387	0/1:157:69,88:69:2439:88:3156:-237.003,0,-172.501	0/1:118:70,48:70:2481:48:1727:-120.194,0,-188.017	1/1:85:0,85:0:0:85:3046:-274.369,-25.5876,0	1/1:88:7,81:7:252:81:2916:-239.645,-3.46168,0	1/1:52:0,52:0:0:52:1850:-166.743,-15.6536,0	0/1:233:96,136:96:3401:136:4858:-367.172,0,-236.102	1/1:291:0,291:0:0:291:10415:-937.264,-87.5997,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:372:3,369:3:108:369:13140:-1172.33,-101.908,0	1/1:151:1,150:1:36:150:5368:-479.651,-41.8573,0	1/1:153:0,153:0:0:153:5470:-492.34,-46.0576,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:27:0,27:0:0:27:945:-85.3622,-8.12781,0	0/1:240:114,126:114:4075:126:4515:-334.27,0,-294.686	1/1:192:0,191:0:0:191:6843:-615.577,-57.4967,0	0/1:89:45,44:45:1620:44:1584:-116.06,0,-119.298	.:.:.:.:.:.:.:.	0/1:131:65,66:65:2328:66:2345:-171.872,0,-170.345	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:170:0,170:0:0:170:6070:-546.373,-51.1751,0	1/1:94:1,93:1:36:93:3320:-295.419,-24.6985,0	1/1:68:0,68:0:0:68:2430:-218.955,-20.47,0	1/1:89:0,89:0:0:89:3165:-285.073,-26.7917,0	1/1:114:0,114:0:0:114:4065:-366.037,-34.3174,0	0/1:159:115,44:115:4136:44:1570:-93.7269,0,-324.558	0/1:117:64,53:64:2284:53:1889:-135.066,0,-170.602	0/1:156:79,77:79:2798:77:2740:-199.88,0,-205.097	1/1:213:0,213:0:0:213:7618:-685.651,-64.1194,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:122:0,122:0:0:122:4365:-393.023,-36.7257,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:131:0,130:0:0:130:4671:-420.189,-39.1339,0	1/1:49:0,49:0:0:49:1745:-157.332,-14.7505,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:96:0,96:0:0:96:3394:-305.667,-28.8989,0	1/1:138:0,138:0:0:138:4958:-446.367,-41.5421,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:222:0,222:0:0:222:7919:-712.733,-66.8287,0	1/1:190:0,190:0:0:190:6744:-607.036,-57.1957,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:86:0,86:0:0:86:3081:-277.518,-25.8886,0	1/1:120:0,120:0:0:120:4296:-386.816,-36.1236,0	1/1:158:3,155:3:108:155:5541:-488.739,-37.4876,0	1/1:58:0,58:0:0:58:2068:-186.39,-17.4597,0	1/1:107:0,107:0:0:107:3812:-343.276,-32.2102,0	1/1:116:0,116:0:0:116:4140:-372.709,-34.9195,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:149:86,63:86:3088:63:2256:-158.449,0,-233.294	0/1:92:44,48:44:1584:48:1693:-124.959,0,-115.157	0/1:225:144,81:144:5105:81:2830:-187.203,0,-391.859	1/1:169:0,169:0:0:169:6065:-545.949,-50.8741,0	0/1:161:88,73:88:3141:73:2601:-185.871,0,-234.449	1/1:153:1,152:1:36:152:5428:-485.051,-42.4593,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:148:92,56:92:3300:56:2008:-136.441,0,-252.666	0/1:157:91,66:91:3247:66:2363:-165.666,0,-245.19	0/1:275:136,139:136:4839:139:4980:-365.563,0,-352.881	0/1:89:48,41:48:1698:41:1476:-106.345,0,-126.309	0/1:110:63,47:63:2264:47:1692:-119.454,0,-170.282	1/1:102:0,102:0:0:102:3652:-328.884,-30.7051,0	0/1:181:75,106:75:2684:106:3800:-287.71,0,-187.319	0/1:48:23,25:23:820:25:894:-66.3303,0,-59.6731	1/1:85:0,85:0:0:85:3026:-272.568,-25.5876,0	1/1:100:0,100:0:0:100:3593:-323.574,-30.103,0	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	0/1:132:67,65:67:2388:65:2328:-170.044,0,-175.442	0/1:98:62,36:62:2224:36:1288:-86.7226,0,-170.906	1/1:118:2,116:2:72:116:4153:-367.114,-28.6848,0	1/1:119:0,119:0:0:119:4280:-385.376,-35.8226,0
chr01	14323471	.	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chr01	14411377	.	A	G	56965.7	PASS	AB=0.550971;ABP=30.9021;AC=158;AF=0.840426;AN=188;AO=2727;CIGAR=1X;DP=3289;DPB=3289;DPRA=0;EPP=5924.62;EPPR=1221.21;GTI=1;LEN=1;MEANALT=1.01064;MQM=44.2747;MQMR=57.8307;NS=94;NUMALT=1;ODDS=0.144879;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97209;QR=19554;RO=561;RPL=0;RPP=5924.62;RPPR=1221.21;RPR=2727;RUN=1;SAF=2727;SAP=5924.62;SAR=0;SRF=561;SRP=1221.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1313:-116.467,-11.1381,0	0/1:28:14,14:14:496:14:504:-36.4496,0,-36.5391	1/1:44:0,44:0:0:44:1582:-138.084,-13.2453,0	1/1:51:0,51:0:0:51:1821:-160.901,-15.3525,0	1/1:17:0,17:0:0:17:608:-54.4217,-5.11751,0	1/1:26:0,26:0:0:26:936:-81.7031,-7.82678,0	0/1:38:14,24:14:496:24:856:-64.6276,0,-33.5135	1/1:38:0,38:0:0:38:1333:-117.846,-11.4391,0	1/1:62:0,62:0:0:62:2217:-195.08,-18.6639,0	1/1:26:0,26:0:0:26:917:-81.0572,-7.82678,0	1/1:24:0,24:0:0:24:860:-76.2259,-7.22472,0	1/1:40:0,40:0:0:40:1418:-125.751,-12.0412,0	0/1:45:22,23:22:761:23:828:-58.3007,0,-55.2298	1/1:24:0,24:0:0:24:849:-75.7799,-7.22472,0	0/1:22:12,10:12:417:10:360:-25.5674,0,-31.2205	1/1:24:0,24:0:0:24:860:-75.715,-7.22472,0	1/1:20:0,20:0:0:20:712:-63.2999,-6.0206,0	0/1:13:8,5:8:284:5:180:-12.3528,0,-21.9377	0/1:6:1,5:1:32:5:180:-14.3055,0,-1.39295	0/1:32:11,21:11:388:21:748:-56.389,0,-25.6107	0/1:71:35,36:35:1176:36:1292:-93.8315,0,-84.6219	0/1:29:9,20:9:320:20:716:-54.3576,0,-20.3641	1/1:41:0,41:0:0:41:1419:-125.708,-12.3422,0	1/1:36:2,34:2:64:34:1220:-102.868,-4.75839,0	1/1:30:0,30:0:0:30:1072:-95.3047,-9.0309,0	0/1:113:50,63:50:1772:63:2259:-160.44,0,-125.584	1/1:85:0,85:0:0:85:3048:-269.657,-25.5876,0	1/1:16:0,16:0:0:16:572:-50.9243,-4.81648,0	1/1:99:1,98:1:32:98:3467:-298.986,-26.6037,0	1/1:55:1,54:1:36:54:1936:-167.062,-12.9584,0	1/1:28:0,28:0:0:28:993:-88.7138,-8.42884,0	1/1:4:0,4:0:0:4:144:-13.1669,-1.20412,0	1/1:8:0,8:0:0:8:284:-25.6264,-2.40824,0	1/1:2:0,2:0:0:2:72:-5.95871,-0.60206,0	1/1:7:0,7:0:0:7:252:-22.6006,-2.10721,0	1/1:13:0,13:0:0:13:468:-41.7263,-3.91339,0	0/1:110:60,50:60:2072:50:1796:-124.505,0,-153.564	1/1:49:0,49:0:0:49:1737:-154.389,-14.7505,0	0/1:20:11,9:11:392:9:320:-22.0681,0,-29.5391	1/1:3:0,3:0:0:3:108:-9.96413,-0.90309,0	0/1:33:12,21:12:432:21:733:-55.0119,0,-29.2416	1/1:5:0,5:0:0:5:180:-16.3696,-1.50515,0	1/1:86:0,86:0:0:86:3076:-272.953,-25.8886,0	1/1:21:0,21:0:0:21:752:-67.0391,-6.32163,0	1/1:36:0,36:0:0:36:1288:-114.977,-10.8371,0	1/1:68:0,68:0:0:68:2425:-212.876,-20.47,0	1/1:26:0,26:0:0:26:936:-81.1775,-7.82678,0	0/1:58:21,37:21:710:37:1322:-99.9081,0,-46.6854	0/1:33:11,22:11:369:22:773:-59.2137,0,-23.584	0/1:38:10,28:10:348:28:1004:-78.2545,0,-20.1194	1/1:45:0,45:0:0:45:1578:-138.168,-13.5464,0	1/1:4:0,4:0:0:4:144:-13.1669,-1.20412,0	1/1:52:0,52:0:0:52:1872:-165.27,-15.6536,0	1/1:27:0,27:0:0:27:960:-84.625,-8.12781,0	1/1:10:0,9:0:0:9:320:-28.3561,-2.70927,0	1/1:39:0,39:0:0:39:1365:-118.455,-11.7402,0	1/1:15:0,15:0:0:15:540:-48.2544,-4.51545,0	1/1:3:0,3:0:0:3:108:-9.85975,-0.90309,0	0/1:13:3,10:3:108:10:356:-27.699,0,-6.16053	1/1:55:0,55:0:0:55:1966:-174.503,-16.5567,0	1/1:71:0,71:0:0:71:2552:-225.975,-21.3731,0	1/1:4:0,4:0:0:4:144:-13.1669,-1.20412,0	1/1:57:0,57:0:0:57:2018:-175.963,-17.1587,0	1/1:46:0,46:0:0:46:1644:-145.976,-13.8474,0	1/1:20:0,20:0:0:20:712:-63.7225,-6.0206,0	1/1:19:0,19:0:0:19:673:-60.0472,-5.71957,0	1/1:71:2,69:2:72:69:2468:-212.237,-14.5397,0	1/1:35:0,35:0:0:35:1252:-111.319,-10.5361,0	1/1:7:0,7:0:0:7:252:-22.7659,-2.10721,0	1/1:28:0,28:0:0:28:985:-86.9414,-8.42884,0	1/1:32:0,32:0:0:32:1144:-99.7101,-9.63296,0	1/1:17:0,17:0:0:17:612:-54.2517,-5.11751,0	0/1:56:28,28:28:961:28:1008:-72.6062,0,-69.7826	0/1:42:26,16:26:924:16:576:-38.2771,0,-70.8251	0/1:42:19,23:19:665:23:786:-57.5884,0,-47.5295	1/1:49:0,49:0:0:49:1741:-154.129,-14.7505,0	0/1:22:8,14:8:276:14:504:-38.2861,0,-18.5266	1/1:12:0,12:0:0:12:413:-36.9079,-3.61236,0	1/1:14:0,14:0:0:14:500:-44.5663,-4.21442,0	0/1:19:6,13:6:212:13:468:-36.2639,0,-13.7052	0/1:28:6,22:6:204:22:788:-61.3223,0,-10.2623	0/1:93:40,53:40:1375:53:1877:-138.971,0,-95.9106	0/1:44:20,24:20:708:24:849:-61.6695,0,-50.7612	0/1:28:11,17:11:384:17:612:-46.3739,0,-26.4501	1/1:13:0,13:0:0:13:464:-41.6416,-3.91339,0	0/1:71:37,34:37:1304:34:1202:-85.6139,0,-95.9615	0/1:17:8,9:8:288:9:324:-23.8787,0,-21.1466	1/1:35:0,35:0:0:35:1251:-109.548,-10.5361,0	1/1:32:0,32:0:0:32:1146:-100.381,-9.63296,0	1/1:14:0,14:0:0:14:500:-44.3557,-4.21442,0	0/1:46:25,21:25:868:21:756:-53.5538,0,-64.5822	0/1:26:17,9:17:608:9:320:-21.0117,0,-47.1938	1/1:26:0,26:0:0:26:932:-83.0869,-7.82678,0	1/1:50:0,50:0:0:50:1781:-158.539,-15.0515,0
chr01	14501446	.	CCCT	CCCC,CCCA	104597	PASS	AB=0.452909,0.542013;ABP=44.7314,36.218;AC=154,34;AF=0.819149,0.180851;AN=188;AO=3688,1184;CIGAR=3M1X,3M1X;DP=4906;DPB=4906;DPRA=13.1774,1.51758;EPP=8011.4,2565.36;EPPR=11.6962;GTI=5;LEN=1,1;MEANALT=1.66667,2.31579;MQM=60,60;MQMR=60;NS=94;NUMALT=2;ODDS=1.0876;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=130929,42254;QR=137;RO=4;RPL=3688,1183;RPP=8011.4,2565.36;RPPR=11.6962;RPR=0,1;RUN=1,1;SAF=0,0;SAP=8011.4,2574.03;SAR=3688,1184;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21,0:0:0:21,0:737,0:-66.6506,-6.32163,0,-66.6506,-6.32163,-66.6506	1/2:71:0,46,24:0:0:46,24:1637,845:-202.307,-68.8883,-55.0409,-133.517,0,-126.292	1/1:47:0,42,0:0:0:42,0:1500,0:-134.937,-12.6433,0,-134.937,-12.6433,-134.937	1/1:87:1,86,0:1:29:86,0:3084,0:-274.888,-23.29,0,-275.189,-25.8886,-277.497	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	1/1:19:0,19,0:0:0:19,0:669,0:-60.5339,-5.71957,0,-60.5339,-5.71957,-60.5339	1/2:55:0,23,32:0:0:23,32:813,1152:-160.567,-94.3572,-87.4335,-66.5654,0,-56.9325	1/1:66:0,66,0:0:0:66,0:2338,0:-210.676,-19.868,0,-210.676,-19.868,-210.676	1/1:16:0,16,0:0:0:16,0:561,0:-50.8171,-4.81648,0,-50.8171,-4.81648,-50.8171	1/1:51:0,50,0:0:0:50,0:1765,0:-158.772,-15.0515,0,-158.772,-15.0515,-158.772	1/1:63:0,63,0:0:0:63,0:2222,0:-200.241,-18.9649,0,-200.241,-18.9649,-200.241	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/2:48:0,22,26:0:0:22,26:792,932:-140.996,-76.3721,-69.7494,-64.983,0,-57.1562	1/1:85:0,85,0:0:0:85,0:2969,0:-267.438,-25.5876,0,-267.438,-25.5876,-267.438	1/2:36:0,19,17:0:0:19,17:680,604:-105.026,-49.5731,-43.8535,-55.8096,0,-50.6921	1/1:39:0,39,0:0:0:39,0:1392,0:-125.579,-11.7402,0,-125.579,-11.7402,-125.579	1/1:60:0,60,0:0:0:60,0:2117,0:-190.798,-18.0618,0,-190.798,-18.0618,-190.798	1/2:34:0,15,19:0:0:15,19:525,680:-98.5189,-55.8096,-51.2941,-43.0626,0,-37.343	1/2:49:0,20,28:0:0:20,28:720,1000:-140.374,-81.6232,-75.6026,-58.8434,0,-50.4146	1/2:91:0,37,53:0:0:37,53:1305,1889:-260.229,-153.972,-142.834,-106.252,0,-90.2971	1/2:78:0,36,40:0:0:36,40:1296,1405:-220.105,-114.354,-103.517,-105.756,0,-93.7153	1/2:72:0,22,49:0:0:22,49:792,1756:-207.847,-143.223,-136.601,-64.6327,0,-49.8822	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:45:0,40,5:0:0:40,5:1413,176:-129.752,-14.6799,-2.63867,-115.424,0,-113.919	1/1:29:0,29,0:0:0:29,0:1036,0:-93.5539,-8.72987,0,-93.5539,-8.72987,-93.5539	1/2:144:0,68,75:0:0:68,75:2410,2692:-415.914,-219.587,-199.117,-196.324,0,-173.747	1/1:105:0,105,0:0:0:105,0:3719,0:-334.909,-31.6082,0,-334.909,-31.6082,-334.909	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1529,-9.0309,0,-97.1529,-9.0309,-97.1529	1/1:122:0,122,0:0:0:122,0:4298,0:-386.993,-36.7257,0,-386.993,-36.7257,-386.993	1/1:80:0,80,0:0:0:80,0:2864,0:-257.997,-24.0824,0,-257.997,-24.0824,-257.997	1/1:37:0,36,0:0:0:36,0:1281,0:-115.232,-10.8371,0,-115.232,-10.8371,-115.232	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:5:0,1,4:0:0:1,4:32,144:-14.6799,-12.1095,-11.8085,-2.89828,0,-1.69416	1/1:16:0,16,0:0:0:16,0:561,0:-50.8171,-4.81648,0,-50.8171,-4.81648,-50.8171	1/1:17:0,16,0:0:0:16,0:572,0:-51.4537,-4.81648,0,-51.4537,-4.81648,-51.4537	1/2:144:0,64,79:0:0:64,79:2265,2832:-415.467,-230.977,-211.711,-184.486,0,-160.704	1/1:120:0,120,0:0:0:120,0:4304,0:-387.536,-36.1236,0,-387.536,-36.1236,-387.536	1/2:96:0,39,57:0:0:39,57:1381,2043:-279.473,-166.982,-155.242,-112.847,0,-95.6879	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/2:61:0,21,40:0:0:21,40:746,1436:-178.283,-117.496,-111.175,-61.1433,0,-49.1021	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	1/1:53:0,53,0:0:0:53,0:1885,0:-169.927,-15.9546,0,-169.927,-15.9546,-169.927	1/1:39:0,39,0:0:0:39,0:1365,0:-123.146,-11.7402,0,-123.146,-11.7402,-123.146	1/1:30:0,30,0:0:0:30,0:1065,0:-96.1598,-9.0309,0,-96.1598,-9.0309,-96.1598	1/1:33:0,33,0:0:0:33,0:1161,0:-104.794,-9.93399,0,-104.794,-9.93399,-104.794	1/1:51:0,50,1:0:0:50,1:1777,36:-159.851,-15.0515,0,-156.914,-11.7543,-156.613	1/2:108:0,57,51:0:0:57,51:2008,1816:-311.846,-148.369,-131.21,-163.831,0,-148.478	1/2:43:0,27,16:0:0:27,16:968,576:-126.309,-47.3585,-39.2307,-79.3096,0,-74.4931	1/2:67:0,29,38:0:0:29,38:1010,1353:-192.755,-110.629,-101.899,-82.4772,0,-71.038	1/1:117:0,117,0:0:0:117,0:4181,0:-376.471,-35.2205,0,-376.471,-35.2205,-376.471	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:55:0,53,1:0:0:53,1:1844,36:-165.874,-15.9546,0,-162.936,-13.0172,-162.635	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:56:0,54,0:0:0:54,0:1913,0:-172.086,-16.2556,0,-172.086,-16.2556,-172.086	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-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chr01	14549830	.	AGTC	CGTC,CGTT	183125	PASS	AB=0.479606,0.515612;ABP=15.8528,10.5362;AC=154,34;AF=0.819149,0.180851;AN=188;AO=6642,1852;CIGAR=1X3M,1X2M1X;DP=8551;DPB=8551;DPRA=26.5342,1.35682;EPP=14425.9,4024.58;EPPR=29.068;GTI=2;LEN=1,4;MEANALT=1.84783,2.34146;MQM=59.8975,59.6647;MQMR=55.4167;NS=94;NUMALT=2;ODDS=0.164392;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=236839,65021;QR=389;RO=12;RPL=0,0;RPP=14425.9,4024.58;RPPR=29.068;RPR=6642,1852;RUN=1,1;SAF=6642,1852;SAP=14425.9,4024.58;SAR=0,0;SRF=12;SRP=29.068;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:60:0,60,0:0:0:60,0:2144,0:-193.228,-18.0618,0,-193.228,-18.0618,-193.228	1/2:103:0,46,57:0:0:46,57:1636,2010:-297.303,-163.984,-150.137,-133.673,0,-116.514	1/1:88:1,87,0:1:36:87,0:3123,0:-277.684,-22.8924,0,-277.985,-26.1896,-280.922	1/1:131:0,130,1:0:0:130,1:4658,36:-419.001,-39.1339,0,-416.064,-35.8367,-415.763	1/1:57:0,56,0:0:0:56,0:2000,0:-179.974,-16.8577,0,-179.974,-16.8577,-179.974	1/1:40:0,39,0:0:0:39,0:1383,0:-124.555,-11.7402,0,-124.555,-11.7402,-124.555	1/2:123:0,56,67:0:0:56,67:1978,2385:-355.813,-194.734,-177.876,-161.433,0,-141.264	1/1:90:0,89,1:0:0:89,1:3179,36:-285.696,-26.7917,0,-282.759,-23.4944,-282.458	1/1:94:0,93,0:0:0:93,0:3316,0:-298.292,-27.9958,0,-298.292,-27.9958,-298.292	1/1:86:0,85,0:0:0:85,0:3048,0:-274.229,-25.5876,0,-274.229,-25.5876,-274.229	1/1:126:0,126,0:0:0:126,0:4499,0:-405.079,-37.9298,0,-405.079,-37.9298,-405.079	1/1:99:0,98,0:0:0:98,0:3496,0:-314.608,-29.5009,0,-314.608,-29.5009,-314.608	1/2:99:0,49,49:0:0:49,49:1760,1692:-280.957,-137.429,-122.678,-143.521,0,-128.771	1/1:100:0,100,0:0:0:100,0:3520,0:-316.984,-30.103,0,-316.984,-30.103,-316.984	1/2:64:0,34,30:0:0:34,30:1216,1063:-186.106,-86.9503,-76.7153,-99.5115,0,-90.4806	1/1:70:0,70,0:0:0:70,0:2481,0:-223.542,-21.0721,0,-223.542,-21.0721,-223.542	1/1:96:0,95,0:0:0:95,0:3386,0:-304.596,-28.5979,0,-304.596,-28.5979,-304.596	1/2:66:0,33,33:0:0:33,33:1184,1156:-190.982,-94.4017,-84.4677,-96.9343,0,-87.0003	1/2:72:0,36,36:0:0:36,36:1288,1269:-208.699,-103.667,-92.8301,-105.387,0,-94.5494	1/2:339:0,161,177:0:0:161,177:5760,6267:-979.942,-510.474,-462.009,-469.463,0,-416.181	1/2:86:0,33,52:0:0:33,52:1188,1824:-245.343,-148.404,-138.47,-96.9353,0,-81.2817	1/2:83:0,37,46:0:0:37,46:1305,1600:-236.699,-130.439,-119.301,-106.61,0,-92.7629	1/1:80:0,80,0:0:0:80,0:2852,0:-256.914,-24.0824,0,-256.914,-24.0824,-256.914	1/1:93:0,89,3:0:0:89,3:3158,108:-284.101,-26.7917,0,-275.288,-17.9195,-274.385	1/1:73:1,71,1:1:30:71,1:2532,36:-225.489,-19.3956,0,-222.852,-18.3852,-224.578	1/2:255:0,123,131:0:0:123,131:4408,4603:-734.162,-374.651,-337.624,-359.545,0,-320.11	1/1:187:0,183,0:0:0:183,0:6509,0:-585.55,-55.0885,0,-585.55,-55.0885,-585.55	1/1:40:0,40,0:0:0:40,0:1432,0:-129.178,-12.0412,0,-129.178,-12.0412,-129.178	1/1:261:0,261,0:0:0:261,0:9285,0:-835.617,-78.5688,0,-835.617,-78.5688,-835.617	1/1:85:0,83,0:0:0:83,0:2954,0:-265.787,-24.9855,0,-265.787,-24.9855,-265.787	1/1:70:0,70,0:0:0:70,0:2508,0:-225.843,-21.0721,0,-225.843,-21.0721,-225.843	1/1:15:0,15,0:0:0:15,0:532,0:-48.2131,-4.51545,0,-48.2131,-4.51545,-48.2131	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	2/2:4:0,0,4:0:0:0,4:0,143:-13.2214,-13.2214,-13.2214,-1.20412,-1.20412,0	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/1:17:0,16,1:0:0:16,1:568,28:-51.1676,-4.81648,0,-48.9546,-2.31923,-48.6536	1/2:231:0,107,123:0:0:107,123:3822,4316:-662.924,-351.312,-319.102,-311.685,0,-274.658	1/1:86:0,86,0:0:0:86,0:3067,0:-276.254,-25.8886,0,-276.254,-25.8886,-276.254	1/2:113:0,62,50:0:0:62,50:2216,1741:-322.224,-141.535,-122.872,-180.681,0,-165.63	2/2:3:0,0,3:0:0:0,3:0,99:-9.23627,-9.23627,-9.23627,-0.90309,-0.90309,0	1/2:122:0,62,60:0:0:62,60:2228,2117:-354.254,-172.494,-153.83,-182.115,0,-164.054	1/1:76:0,73,0:0:0:73,0:2574,0:-231.542,-21.9752,0,-231.542,-21.9752,-231.542	1/1:132:0,130,0:0:0:130,0:4611,0:-414.86,-39.1339,0,-414.86,-39.1339,-414.86	1/1:121:0,121,0:0:0:121,0:4336,0:-390.412,-36.4246,0,-390.412,-36.4246,-390.412	1/1:84:0,82,1:0:0:82,1:2918,36:-262.515,-24.6845,0,-259.577,-21.7271,-259.276	1/1:51:0,50,0:0:0:50,0:1788,0:-160.843,-15.0515,0,-160.843,-15.0515,-160.843	1/1:92:0,91,0:0:0:91,0:3241,0:-291.552,-27.3937,0,-291.552,-27.3937,-291.552	1/2:130:0,55,73:0:0:55,73:1976,2544:-368.001,-206.899,-190.342,-161.135,0,-139.159	1/2:87:0,48,39:0:0:48,39:1711,1376:-251.865,-112.393,-97.944,-139.826,0,-128.086	1/2:111:0,40,71:0:0:40,71:1427,2484:-318.74,-202.409,-190.368,-116.686,0,-95.3124	1/1:169:4,164,0:4:144:164,0:5857,0:-513.658,-37.6193,0,-514.862,-49.3689,-526.612	1/1:17:0,17,0:0:0:17,0:604,0:-54.6906,-5.11751,0,-54.6906,-5.11751,-54.6906	1/1:110:0,110,0:0:0:110,0:3919,0:-352.896,-33.1133,0,-352.896,-33.1133,-352.896	1/1:55:0,55,0:0:0:55,0:1972,0:-177.755,-16.5567,0,-177.755,-16.5567,-177.755	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:131:0,131,0:0:0:131,0:4679,0:-421.257,-39.4349,0,-421.257,-39.4349,-421.257	1/1:59:1,58,0:1:36:58,0:2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chr01	14680654	.	G	T	5106.04	PASS	AB=0.233468;ABP=1533.27;AC=31;AF=0.166667;AN=186;AO=606;CIGAR=1X;DP=6960;DPB=6960;DPRA=1.11017;EPP=1318.92;EPPR=13800.5;GTI=8;LEN=1;MEANALT=1;MQM=59.9901;MQMR=59.9877;NS=93;NUMALT=1;ODDS=1.16072;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21706;QR=227081;RO=6354;RPL=0;RPP=1318.92;RPPR=13800.5;RPR=606;RUN=1;SAF=606;SAP=1318.92;SAR=0;SRF=6354;SRP=13800.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:48:46,2:46:1644:2:72:0,-7.61272,-141.412	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:138:137,1:137:4900:1:21:0,-39.4422,-439.052	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:45:45,0:45:1612:0:0:0,-13.5463,-144.18	0/1:49:24,25:24:856:25:900:-66.5705,0,-62.6106	0/0:119:118,1:118:4225:1:36:0,-32.2243,-376.83	0/1:48:36,12:36:1288:12:432:-24.7718,0,-101.774	0/0:133:133,0:133:4712:0:0:0,-40.037,-424.237	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.438	0/1:76:45,31:45:1597:31:1100:-76.432,0,-121.14	0/0:99:99,0:99:3536:0:0:0,-29.802,-318.45	0/1:76:52,24:52:1872:24:860:-54.8436,0,-145.881	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.052	0/1:61:45,16:45:1605:16:576:-33.8122,0,-126.375	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:128:128,0:128:4577:0:0:0,-38.5318,-412.094	0/1:114:72,42:72:2565:42:1508:-101.697,0,-196.781	0/1:33:25,8:25:885:8:288:-16.3334,0,-70.0325	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:25:18,7:18:644:7:252:-15.5032,0,-50.7648	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:132:112,20:112:4001:20:716:-25.0318,0,-320.542	0/1:90:75,15:75:2665:15:540:-21.8438,0,-213.002	0/0:71:71,0:71:2541:0:0:0,-21.3731,-228.939	0/0:152:152,0:152:5433:0:0:0,-45.7566,-489.098	0/0:98:98,0:98:3509:0:0:0,-29.5009,-316.018	0/0:61:56,5:56:1978:5:180:0,-1.81076,-161.739	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:187:135,52:135:4848:52:1868:-112.102,0,-380.18	0/0:84:81,3:81:2904:3:104:0,-15.5837,-251.893	0/1:51:38,13:38:1360:13:464:-26.745,0,-107.348	.:.:.:.:.:.:.:.	0/0:61:56,5:56:1997:5:176:0,-2.17781,-163.817	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:97:97,0:97:3435:0:0:0,-29.1999,-309.361	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/0:89:89,0:89:3173:0:0:0,-26.7917,-285.793	0/0:68:68,0:68:2412:0:0:0,-20.47,-217.337	0/0:99:99,0:99:3525:0:0:0,-29.802,-317.459	0/0:72:66,6:66:2330:6:216:0,-1.88365,-190.167	0/1:96:81,15:81:2889:15:536:-19.6759,0,-231.346	0/1:79:67,12:67:2393:12:428:-15.0774,0,-191.844	0/0:176:176,0:176:6251:0:0:0,-52.9813,-562.686	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:131:131,0:131:4692:0:0:0,-39.4349,-422.44	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:104:104,0:104:3675:0:0:0,-31.3071,-330.952	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.56	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:171:171,0:171:6125:0:0:0,-51.4761,-551.348	0/1:65:55,10:55:1953:10:356:-12.8143,0,-156.477	0/1:53:41,12:41:1472:12:432:-23.2666,0,-116.822	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.056	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/1:70:51,19:51:1832:19:684:-40.8182,0,-144.089	0/1:29:16,13:16:572:13:468:-33.7298,0,-43.0836	0/1:33:28,5:28:1000:5:180:-6.61808,0,-80.3814	0/1:78:54,24:54:1944:24:860:-54.2415,0,-151.756	0/0:229:229,0:229:8193:0:0:0,-68.9359,-737.337	0/1:174:153,21:153:5477:21:741:-14.6324,0,-440.676	0/1:43:36,7:36:1292:7:252:-10.0847,0,-103.639	0/1:144:127,17:127:4552:17:604:-11.3423,0,-366.497	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:136:136,0:136:4847:0:0:0,-40.9401,-436.381	0/1:43:36,7:36:1288:7:248:-9.7199,0,-103.279	0/1:163:139,24:139:4939:24:864:-29.0147,0,-395.591	0/1:81:68,13:68:2433:13:468:-18.0762,0,-194.84	0/1:65:43,22:43:1544:22:792:-52.0387,0,-119.686	0/1:80:68,12:68:2433:12:432:-15.1388,0,-195.141	0/1:139:95,44:95:3389:44:1580:-100.648,0,-263.381	0/0:37:34,3:34:1224:3:104:0,-1.4353,-100.764	0/0:81:81,0:81:2916:0:0:0,-24.3834,-262.674	0/0:73:72,1:72:2576:1:36:0,-18.3769,-228.491	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:59:38,21:38:1368:21:756:-50.6065,0,-105.66	0/1:44:28,16:28:1008:16:576:-38.9297,0,-77.791	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/0:145:145,0:145:5162:0:0:0,-43.6493,-464.72
chr01	14735470	.	C	G	153478	PASS	AB=0.535782;ABP=56.0011;AC=147;AF=0.781915;AN=188;AO=7303;CIGAR=1X;DP=9533;DPB=9533;DPRA=0;EPP=15861.3;EPPR=4825.85;GTI=1;LEN=1;MEANALT=1.09574;MQM=58.1858;MQMR=59.9478;NS=94;NUMALT=1;ODDS=0.0711526;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=260937;QR=79060;RO=2221;RPL=7303;RPP=15861.3;RPPR=4825.85;RPR=0;RUN=1;SAF=7303;SAP=15861.3;SAR=0;SRF=2221;SRP=4825.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:74:0,74:0:0:74:2656:-239.025,-22.2762,0	0/1:131:50,81:50:1792:81:2910:-221.724,0,-122.128	1/1:109:0,109:0:0:109:3896:-350.39,-32.8123,0	1/1:194:0,193:0:0:193:6904:-620.814,-58.0988,0	1/1:89:0,89:0:0:89:3189:-287.065,-26.7917,0	1/1:64:0,64:0:0:64:2300:-206.902,-19.2659,0	0/1:143:68,75:68:2421:75:2692:-198.426,0,-175.097	1/1:133:0,133:0:0:133:4750:-425.926,-40.037,0	0/1:142:58,84:58:2037:84:3016:-228.68,0,-140.85	1/1:92:0,92:0:0:92:3275:-294.827,-27.6948,0	1/1:39:0,39:0:0:39:1400:-126.186,-11.7402,0	1/1:72:0,72:0:0:72:2564:-230.894,-21.6742,0	0/1:65:28,35:28:989:35:1239:-92.0973,0,-70.0452	1/1:38:0,38:0:0:38:1349:-121.697,-11.4391,0	0/1:73:34,39:34:1220:39:1380:-102.426,0,-88.1316	1/1:53:0,53:0:0:53:1908:-171.987,-15.9546,0	1/1:37:0,37:0:0:37:1324:-119.211,-11.1381,0	0/1:60:29,31:29:1035:31:1106:-81.258,0,-75.4013	1/1:28:0,28:0:0:28:999:-90.1361,-8.42884,0	1/1:205:0,204:0:0:204:7290:-655.305,-61.4101,0	0/1:240:111,128:111:3938:128:4561:-336.999,0,-282.306	0/1:129:63,66:63:2252:66:2360:-173.075,0,-164.11	1/1:160:0,160:0:0:160:5729:-515.568,-48.1648,0	0/1:111:39,72:39:1395:72:2544:-195.635,0,-92.434	1/1:126:0,126:0:0:126:4501:-404.78,-37.9298,0	0/1:239:118,121:118:4187:121:4308:-315.926,0,-305.066	0/1:301:142,159:142:5088:159:5678:-420.067,0,-367.453	1/1:48:0,48:0:0:48:1720:-154.996,-14.4494,0	1/1:292:0,291:0:0:291:10422:-937.195,-87.5997,0	1/1:169:2,167:2:57:167:5992:-533.663,-45.4608,0	0/1:105:49,56:49:1742:56:2012:-149.614,0,-125.455	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:19:0,19:0:0:19:675:-61.0754,-5.71957,0	0/1:8:3,5:3:104:5:180:-14.101,0,-7.29457	1/1:8:0,8:0:0:8:284:-25.8523,-2.40824,0	1/1:7:0,7:0:0:7:252:-23.018,-2.10721,0	0/1:213:106,107:106:3772:107:3836:-281.26,0,-273.965	0/1:195:71,124:71:2530:124:4402:-336.013,0,-169.245	0/1:44:18,26:18:622:26:932:-70.8274,0,-43.0567	0/1:2:1,1:1:36:1:36:-2.9945,0,-2.99621	0/1:112:55,57:55:1963:57:2037:-149.866,0,-143.229	1/1:29:0,29:0:0:29:1040:-93.8405,-8.72987,0	1/1:231:0,231:0:0:231:8281:-744.226,-69.5379,0	1/1:69:0,69:0:0:69:2471:-222.49,-20.7711,0	1/1:69:0,69:0:0:69:2467:-221.479,-20.7711,0	1/1:188:1,187:1:36:187:6667:-596.126,-52.9954,0	1/1:143:1,141:1:36:141:5045:-449.912,-39.5075,0	0/1:178:88,90:88:3147:90:3184:-232.975,0,-229.872	0/1:164:64,100:64:2291:100:3583:-273.201,0,-157.082	0/1:113:57,56:57:2026:56:2016:-147.493,0,-148.595	1/1:249:2,247:2:72:247:8840:-788.031,-68.1197,0	1/1:7:0,7:0:0:7:252:-22.6535,-2.10721,0	1/1:98:0,98:0:0:98:3498:-314.444,-29.5009,0	1/1:48:0,48:0:0:48:1724:-155.388,-14.4494,0	1/1:20:0,20:0:0:20:701:-63.2633,-6.0206,0	1/1:85:0,85:0:0:85:3029:-272.651,-25.5876,0	1/1:85:0,85:0:0:85:3029:-272.693,-25.5876,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:6,2:6:207:2:72:-4.41989,0,-16.5587	1/1:124:0,123:0:0:123:4358:-391.613,-37.0267,0	1/1:101:4,97:4:144:97:3487:-300.613,-17.0904,0	1/1:8:0,8:0:0:8:288:-26.2387,-2.40824,0	1/1:194:1,193:1:36:193:6913:-618.101,-54.8015,0	0/1:239:124,115:124:4430:115:4105:-297.363,0,-326.925	0/1:80:42,38:42:1485:38:1356:-98.1075,0,-109.804	1/1:78:0,78:0:0:78:2785:-250.713,-23.4803,0	1/1:181:0,181:0:0:181:6465:-581.525,-54.4864,0	1/1:158:1,157:1:36:157:5602:-500.17,-43.9645,0	1/1:21:0,21:0:0:21:752:-68.0008,-6.32163,0	1/1:93:0,93:0:0:93:3306:-296.599,-27.9958,0	0/1:104:42,62:42:1476:62:2224:-169.082,0,-101.825	0/1:14:7,7:7:252:7:252:-18.8089,0,-18.8145	0/1:142:70,72:70:2499:72:2540:-185.307,0,-182.416	0/1:96:25,71:25:888:71:2516:-197.531,0,-51.3398	0/1:120:54,66:54:1928:66:2337:-173.107,0,-137.673	0/1:161:88,73:88:3156:73:2605:-186.119,0,-235.799	0/1:113:46,67:46:1612:67:2400:-182.057,0,-111.335	0/1:72:30,42:30:1076:42:1483:-111.546,0,-75.4787	1/1:8:0,8:0:0:8:288:-26.2472,-2.40824,0	1/1:87:0,87:0:0:87:3124:-281.181,-26.1896,0	0/1:81:38,43:38:1364:43:1544:-114.798,0,-98.6773	0/1:265:132,133:132:4714:133:4745:-346.72,0,-344.646	0/1:87:46,41:46:1629:41:1476:-106.851,0,-120.707	0/1:61:33,28:33:1179:28:1004:-72.2931,0,-88.0544	0/1:78:40,38:40:1399:38:1351:-98.069,0,-102.723	0/1:126:60,66:60:2133:66:2359:-174.497,0,-154.306	0/1:46:19,27:19:675:27:968:-73.3503,0,-47.2296	1/1:62:0,62:0:0:62:2224:-199.183,-18.6639,0	1/1:70:0,69:0:0:69:2448:-220.164,-20.7711,0	1/1:17:0,17:0:0:17:612:-55.3888,-5.11751,0	0/1:48:16,32:16:563:32:1133:-85.6664,0,-36.5497	0/1:56:39,17:39:1391:17:612:-38.5548,0,-108.631	1/1:77:0,77:0:0:77:2768:-249.236,-23.1793,0	1/1:109:0,109:0:0:109:3892:-350.323,-32.8123,0
chr01	14735479	.	TTGCAA	TTGTAG,TTGTAA	202118	PASS	AB=0.538333,0.455191;ABP=64.1077,86.4947;AC=147,41;AF=0.781915,0.218085;AN=188;AO=7386,2188;CIGAR=3M1X1M1X,3M1X2M;DP=9631;DPB=9633.5;DPRA=0,1.44347;EPP=16041.5,4754.19;EPPR=5.18177;GTI=0;LEN=6,1;MEANALT=2.01064,2.67391;MQM=58.1943,59.9753;MQMR=60;NS=94;NUMALT=2;ODDS=1.21833;PAIRED=0,0;PAIREDR=0;PAO=5,5;PQA=178.667,178.667;PQR=178.667;PRO=5;QA=259910,77827;QR=36;RO=1;RPL=7386,2188;RPP=16041.5,4754.19;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=7386,2188;SAP=16041.5,4754.19;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:0,76,0:0:0:76,0:2675,0:-240.781,-22.8783,0,-240.781,-22.8783,-240.781	1/2:130:0,82,47:0:0:82,47:2853,1667:-367.521,-135.809,-111.124,-231.705,0,-217.556	1/1:112:0,112,0:0:0:112,0:3947,0:-354.995,-33.7154,0,-354.995,-33.7154,-354.995	1/1:197:0,196,0:0:0:196,0:6876,0:-618.386,-59.0019,0,-618.386,-59.0019,-618.386	1/1:89:0,89,0:0:0:89,0:3128,0:-281.618,-26.7917,0,-281.618,-26.7917,-281.618	1/1:68:0,67,0:0:0:67,0:2365,0:-212.557,-20.169,0,-212.557,-20.169,-212.557	1/2:143:0,74,68:0:0:74,68:2617,2396:-407.184,-195.068,-172.792,-212.11,0,-191.64	1/1:138:0,137,0:0:0:137,0:4806,0:-430.825,-41.2411,0,-430.825,-41.2411,-430.825	1/2:143:0,84,58:0:0:84,58:2961,2047:-407.535,-166.678,-141.391,-240.851,0,-223.391	1/1:92:0,92,0:0:0:92,0:3240,0:-291.679,-27.6948,0,-291.679,-27.6948,-291.679	1/1:40:0,40,0:0:0:40,0:1404,0:-126.518,-12.0412,0,-126.518,-12.0412,-126.518	1/1:76:0,76,0:0:0:76,0:2678,0:-241.153,-22.8783,0,-241.153,-22.8783,-241.153	1/2:68:0,38,30:0:0:38,30:1307,1053:-191.861,-86.0477,-74.6085,-106.161,0,-97.1302	1/1:41:0,41,0:0:0:41,0:1437,0:-129.441,-12.3422,0,-129.441,-12.3422,-129.441	1/2:73:0,39,34:0:0:39,34:1385,1189:-209.821,-97.0789,-85.3388,-113.094,0,-102.859	1/1:53:0,53,0:0:0:53,0:1889,0:-170.277,-15.9546,0,-170.277,-15.9546,-170.277	1/1:37:0,37,0:0:0:37,0:1283,0:-115.522,-11.1381,0,-115.522,-11.1381,-115.522	1/2:58:0,31,27:0:0:31,27:1079,963:-165.953,-78.8581,-69.5262,-87.4463,0,-79.3185	1/1:27:0,27,0:0:0:27,0:947,0:-85.4737,-8.12781,0,-85.4737,-8.12781,-85.4737	1/1:204:0,203,0:0:0:203,0:7182,0:-645.643,-61.1091,0,-645.643,-61.1091,-645.643	1/2:239:0,132,107:0:0:132,107:4650,3817:-688.394,-311.463,-271.727,-377.232,0,-345.022	1/2:128:0,64,63:0:0:64,63:2256,2234:-365.728,-182.087,-162.821,-183.723,0,-164.758	1/1:163:0,161,0:0:0:161,0:5699,0:-512.549,-48.4658,0,-512.549,-48.4658,-512.549	1/2:113:0,73,40:0:0:73,40:2568,1423:-325.183,-116.326,-94.3503,-209.212,0,-197.171	1/1:131:0,130,0:0:0:130,0:4549,0:-409.117,-39.1339,0,-409.117,-39.1339,-409.117	1/2:244:0,127,116:0:0:127,116:4436,4160:-700.059,-339.303,-301.072,-360.751,0,-325.831	1/2:309:0,166,141:0:0:166,141:5815,5002:-879.727,-407.523,-357.552,-472.196,0,-429.751	1/1:47:0,47,0:0:0:47,0:1672,0:-150.709,-14.1484,0,-150.709,-14.1484,-150.709	1/1:295:0,294,0:0:0:294,0:10404,0:-935.708,-88.5028,0,-935.708,-88.5028,-935.708	1/1:170:0,168,2:0:0:168,2:5869,68:-527.779,-50.573,0,-522.264,-44.7438,-521.662	1/2:109:0,53,49:0:0:53,49:1884,1761:-296.939,-143.425,-127.471,-153.542,0,-138.792	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:19:0,19,0:0:0:19,0:666,0:-60.2638,-5.71957,0,-60.2638,-5.71957,-60.2638	1/2:9:0,6,3:0:0:6,3:205,104:-25.4209,-8.79971,-6.99353,-16.9659,0,-16.0628	1/1:9:0,9,0:0:0:9,0:319,0:-29.0054,-2.70927,0,-29.0054,-2.70927,-29.0054	1/1:7:0,7,0:0:0:7,0:252,0:-23.018,-2.10721,0,-23.018,-2.10721,-23.018	1/2:213:0,110,102:0:0:110,102:3877,3627:-611.347,-295.745,-262.632,-315.769,0,-285.064	1/2:193:0,124,69:0:0:124,69:4346,2476:-554.602,-202.322,-164.995,-352.635,0,-331.864	1/2:43:0,26,17:0:0:26,17:926,608:-125.283,-49.9345,-42.1077,-75.7055,0,-70.588	1/2:2:0,1,1:0:0:1,1:33,36:-5.94966,-3.29724,-2.99621,-2.99725,0,-2.69622	1/2:111:0,57,54:0:0:57,54:2006,1944:-322.21,-158.929,-141.77,-163.586,0,-147.331	1/1:29:0,29,0:0:0:29,0:1021,0:-92.148,-8.72987,0,-92.148,-8.72987,-92.148	1/1:237:0,235,0:0:0:235,0:8283,0:-743.123,-70.7421,0,-743.123,-70.7421,-743.123	1/1:70:0,70,0:0:0:70,0:2475,0:-222.923,-21.0721,0,-222.923,-21.0721,-222.923	1/1:70:0,69,0:0:0:69,0:2401,0:-215.726,-20.7711,0,-215.726,-20.7711,-215.726	1/1:189:0,186,1:0:0:186,1:6556,36:-589.517,-55.9916,0,-586.58,-53.0495,-586.279	1/1:148:0,146,1:0:0:146,1:5074,36:-455.633,-43.9504,0,-452.696,-40.968,-452.395	1/2:180:0,93,86:0:0:93,86:3210,3062:-510.26,-249.666,-221.67,-260.69,0,-234.802	1/2:163:0,99,63:0:0:99,63:3456,2255:-464.989,-184.001,-154.199,-281.096,0,-262.131	1/2:114:0,54,58:0:0:54,58:1906,2040:-321.225,-166.082,-149.826,-155.169,0,-137.71	1/1:252:0,251,0:0:0:251,0:8866,0:-797.153,-75.5585,0,-797.153,-75.5585,-797.153	1/1:7:0,6,0:0:0:6,0:216,0:-19.4659,-1.80618,0,-19.4659,-1.80618,-19.4659	1/1:98:0,98,0:0:0:98,0:3504,0:-315.022,-29.5009,0,-315.022,-29.5009,-315.022	1/1:49:0,49,0:0:0:49,0:1687,0:-152.064,-14.7505,0,-152.064,-14.7505,-152.064	1/1:20:0,19,0:0:0:19,0:684,0:-61.6072,-5.71957,0,-61.6072,-5.71957,-61.6072	1/1:89:0,89,0:0:0:89,0:3147,0:-283.065,-26.7917,0,-283.065,-26.7917,-283.0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chr01	14735573	.	G	A	232128	PASS	AB=0.543425;ABP=110.886;AC=148;AF=0.787234;AN=188;AO=10678;CIGAR=1X;DP=13699;DPB=13699;DPRA=0;EPP=22329.5;EPPR=6302.7;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.8546;MQMR=59.9622;NS=94;NUMALT=1;ODDS=6.0662;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=382663;QR=106755;RO=3016;RPL=10578;RPP=22329.5;RPPR=6302.7;RPR=100;RUN=1;SAF=0;SAP=23190;SAR=10678;SRF=0;SRP=6552.17;SRR=3016;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51:0:0:51:1810:-163.073,-15.3525,0	0/1:131:56,75:56:2012:75:2692:-203.082,0,-141.918	1/1:177:0,177:0:0:177:6350:-570.37,-53.2823,0	1/1:329:2,327:2:72:327:11737:-1049.35,-92.2021,0	1/1:90:0,90:0:0:90:3206:-288.762,-27.0927,0	1/1:86:0,86:0:0:86:3087:-278.037,-25.8886,0	0/1:205:102,103:102:3595:103:3700:-271.462,0,-262.05	1/1:176:0,176:0:0:176:6297:-566.635,-52.9813,0	0/1:85:32,53:32:1144:53:1896:-145.314,0,-77.682	1/1:111:0,111:0:0:111:3976:-357.981,-33.4143,0	1/1:114:0,114:0:0:114:4104:-369.537,-34.3174,0	1/1:118:0,118:0:0:118:4236:-381.411,-35.5215,0	0/1:102:43,59:43:1532:59:2115:-159.899,0,-107.468	1/1:135:0,135:0:0:135:4847:-436.337,-40.6391,0	0/1:93:35,58:35:1252:58:2077:-159.204,0,-84.9893	1/1:58:0,58:0:0:58:2069:-186.476,-17.4597,0	1/1:108:0,108:0:0:108:3876:-348.957,-32.5112,0	0/1:90:53,37:53:1896:37:1313:-91.377,0,-143.825	1/1:75:0,75:0:0:75:2691:-242.36,-22.5773,0	1/1:358:0,358:0:0:358:12855:-1156.74,-107.769,0	0/1:167:82,85:82:2895:85:3049:-224.367,0,-210.516	0/1:211:128,83:128:4512:83:2959:-203.023,0,-342.733	1/1:127:1,126:1:36:126:4513:-402.738,-34.6325,0	0/1:130:63,67:63:2204:67:2387:-175.883,0,-159.487	1/1:172:1,171:1:36:171:6108:-546.112,-48.1789,0	0/1:439:200,238:200:7079:238:8539:-636.357,0,-505.108	0/1:365:158,207:158:5579:207:7412:-557.117,0,-391.736	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:522:0,522:0:0:522:18684:-1680.26,-157.138,0	1/1:274:0,274:0:0:274:9820:-883.74,-82.4822,0	0/1:231:97,133:97:3440:133:4754:-358.42,0,-240.216	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:21:0,21:0:0:21:752:-68.0059,-6.32163,0	0/1:328:153,175:153:5411:175:6288:-467.167,0,-388.387	0/1:261:108,153:108:3827:153:5492:-415.812,0,-266.061	0/1:103:41,62:41:1468:62:2224:-169.415,0,-101.41	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:234:90,143:90:3193:143:5126:-390.93,0,-217.094	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:194:0,194:0:0:194:6941:-623.978,-58.3998,0	1/1:97:0,97:0:0:97:3475:-312.955,-29.1999,0	1/1:84:0,84:0:0:84:3020:-271.174,-25.2865,0	1/1:146:0,146:0:0:146:5234:-471.169,-43.9504,0	1/1:168:2,166:2:72:166:5927:-526.689,-43.7363,0	0/1:257:114,143:114:4027:143:5121:-383.658,0,-285.256	0/1:159:85,74:85:2988:74:2633:-189.343,0,-221.289	0/1:202:85,117:85:3025:117:4195:-316.917,0,-211.672	1/1:293:0,292:0:0:292:10433:-938.37,-87.9008,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:214:0,214:0:0:214:7665:-689.384,-64.4204,0	1/1:51:0,51:0:0:51:1816:-163.664,-15.3525,0	1/1:51:0,51:0:0:51:1823:-164.348,-15.3525,0	1/1:194:0,194:0:0:194:6951:-625.649,-58.3998,0	1/1:43:0,43:0:0:43:1535:-138.245,-12.9443,0	1/1:19:0,19:0:0:19:665:-60.1728,-5.71957,0	0/1:33:12,21:12:424:21:756:-58.4332,0,-28.5624	1/1:215:0,215:0:0:215:7704:-693.228,-64.7215,0	1/1:232:0,232:0:0:232:8322:-748.881,-69.839,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:300:0,300:0:0:300:10735:-966.017,-90.309,0	0/1:217:92,125:92:3274:125:4470:-337.035,0,-229.557	0/1:110:61,49:61:2155:49:1760:-125.551,0,-161.104	1/1:117:0,117:0:0:117:4208:-378.888,-35.2205,0	1/1:215:1,214:1:36:214:7686:-688.128,-61.1232,0	1/1:155:6,149:6:216:149:5345:-461.231,-26.8691,0	1/1:65:0,65:0:0:65:2323:-209.278,-19.567,0	1/1:107:0,107:0:0:107:3852:-346.866,-32.2102,0	0/1:126:58,68:58:2072:68:2440:-181.917,0,-148.803	0/1:23:9,14:9:316:14:496:-38.0506,0,-21.8552	0/1:222:99,123:99:3437:123:4416:-330.618,0,-242.69	0/1:79:43,36:43:1507:36:1292:-92.7981,0,-112.141	0/1:262:111,151:111:3921:151:5411:-408.246,0,-274.216	0/1:222:112,110:112:3963:110:3956:-289.397,0,-290.034	0/1:104:49,54:49:1736:54:1940:-143.496,0,-125.199	0/1:81:29,52:29:1032:52:1864:-143.653,0,-68.81	1/1:33:0,33:0:0:33:1188:-107.226,-9.93399,0	1/1:179:0,179:0:0:179:6419:-577.788,-53.8844,0	0/1:159:83,76:83:2916:76:2728:-197.893,0,-214.815	0/1:346:134,212:134:4775:212:7585:-578.526,0,-325.75	0/1:147:71,76:71:2540:76:2732:-201.842,0,-184.6	0/1:105:36,69:36:1288:69:2476:-191.485,0,-84.6154	0/1:75:35,40:35:1236:40:1416:-105.158,0,-88.967	0/1:161:81,80:81:2840:80:2872:-210.249,0,-207.371	0/1:51:22,29:22:784:29:1035:-78.1096,0,-55.5314	1/1:125:0,125:0:0:125:4492:-404.438,-37.6288,0	1/1:114:0,114:0:0:114:4091:-368.37,-34.3174,0	1/1:108:0,108:0:0:108:3876:-349.031,-32.5112,0	0/1:191:93,98:93:3288:98:3516:-259.148,0,-238.644	0/1:69:46,23:46:1632:23:828:-54.073,0,-126.398	1/1:143:0,143:0:0:143:5123:-461.206,-43.0473,0	1/1:122:0,122:0:0:122:4379:-394.282,-36.7257,0
chr01	14737884	.	A	T	86767.4	PASS	AB=0.439895;ABP=110.295;AC=143;AF=0.768817;AN=186;AO=4257;CIGAR=1X;DP=6184;DPB=6184;DPRA=22.63;EPP=9246.97;EPPR=4180.92;GTI=7;LEN=1;MEANALT=1.03297;MQM=53.8003;MQMR=54.0068;NS=93;NUMALT=1;ODDS=0.157399;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152246;QR=68580;RO=1924;RPL=4257;RPP=9246.97;RPPR=4172.24;RPR=0;RUN=1;SAF=4257;SAP=9246.97;SAR=0;SRF=1923;SRP=4172.24;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:180:-16.325,-1.50515,0	0/1:73:34,39:34:1212:39:1391:-102.997,0,-86.6499	1/1:69:0,69:0:0:69:2455:-220.057,-20.7711,0	1/1:94:0,94:0:0:94:3367:-302.486,-28.2968,0	1/1:8:0,8:0:0:8:288:-26.0354,-2.40824,0	1/1:10:0,10:0:0:10:360:-32.6212,-3.0103,0	0/1:85:42,43:42:1497:43:1540:-112.864,0,-109.204	1/1:65:0,65:0:0:65:2336:-209.477,-19.567,0	0/1:88:63,25:63:2214:25:900:-54.5055,0,-171.796	1/1:103:1,102:1:36:102:3643:-322.449,-27.4104,0	1/1:70:0,70:0:0:70:2496:-224.529,-21.0721,0	1/1:58:0,58:0:0:58:2076:-185.913,-17.4597,0	0/1:75:41,34:41:1468:34:1220:-85.8565,0,-109.471	1/1:65:0,65:0:0:65:2301:-206.98,-19.567,0	0/1:66:36,30:36:1292:30:1080:-77.3955,0,-96.2939	1/1:34:0,34:0:0:34:1224:-110.106,-10.235,0	1/1:85:0,85:0:0:85:3027:-269.604,-25.5876,0	0/1:66:34,32:34:1220:32:1148:-82.7346,0,-89.9604	1/1:60:0,60:0:0:60:2139:-191.723,-18.0618,0	1/1:129:0,129:0:0:129:4623:-415.08,-38.8329,0	0/1:103:51,52:51:1820:52:1864:-136.28,0,-132.586	0/1:93:74,19:74:2652:19:680:-33.5166,0,-210.405	1/1:41:0,41:0:0:41:1476:-131.85,-12.3422,0	0/1:66:48,18:48:1678:18:648:-38.5751,0,-131.002	1/1:27:0,27:0:0:27:972:-86.9863,-8.12781,0	0/1:196:113,83:113:4028:83:2967:-208.014,0,-303.098	0/1:125:71,54:71:2544:54:1931:-135.797,0,-190.447	1/1:44:0,44:0:0:44:1584:-141.783,-13.2453,0	1/1:132:0,132:0:0:132:4734:-424.493,-39.736,0	1/1:40:0,40:0:0:40:1427:-127.358,-12.0412,0	0/1:60:30,30:30:1041:30:1076:-78.9359,0,-75.8538	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.954	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	0/1:229:109,120:109:3895:120:4312:-318.513,0,-281.582	0/1:71:42,29:42:1504:29:1025:-70.4508,0,-114.025	0/1:76:41,35:41:1468:35:1260:-90.2225,0,-108.108	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/1:71:38,32:38:1360:32:1141:-80.5818,0,-100.705	1/1:35:0,35:0:0:35:1256:-112.79,-10.5361,0	1/1:58:0,58:0:0:58:2071:-185.474,-17.4597,0	1/1:118:2,116:2:72:116:4150:-365.965,-28.6873,0	1/1:72:0,72:0:0:72:2580:-231.535,-21.6742,0	1/1:29:0,29:0:0:29:1044:-93.8416,-8.72987,0	1/1:46:0,46:0:0:46:1652:-147.999,-13.8474,0	0/1:61:24,37:24:845:37:1328:-100.572,0,-57.9471	0/1:111:52,59:52:1849:59:2120:-157.49,0,-132.319	0/1:140:79,61:79:2828:61:2175:-153.695,0,-211.646	1/1:76:1,75:1:36:75:2684:-237.721,-19.2952,0	1/1:7:0,7:0:0:7:252:-23.0101,-2.10721,0	1/1:62:0,62:0:0:62:2204:-198.104,-18.6639,0	1/1:13:0,13:0:0:13:464:-42.0819,-3.91339,0	1/1:5:0,5:0:0:5:180:-16.3193,-1.50515,0	1/1:47:0,47:0:0:47:1688:-150.474,-14.1484,0	1/1:26:0,25:0:0:25:888:-79.6927,-7.52575,0	1/1:3:0,3:0:0:3:104:-9.70055,-0.90309,0	0/1:4:3,1:3:108:1:36:-2.39315,0,-8.86823	1/1:40:0,40:0:0:40:1415:-126.756,-12.0412,0	1/1:113:1,112:1:36:112:3999:-355.559,-30.4207,0	1/1:4:0,4:0:0:4:144:-13.218,-1.20412,0	1/1:129:0,129:0:0:129:4640:-417.004,-38.8329,0	0/1:78:42,36:42:1488:36:1292:-92.9005,0,-110.342	0/1:55:26,29:26:917:29:1016:-75.0111,0,-65.5594	1/1:41:0,41:0:0:41:1464:-131.794,-12.3422,0	1/1:95:0,95:0:0:95:3345:-299.808,-28.5979,0	1/1:51:0,51:0:0:51:1832:-164.835,-15.3525,0	1/1:28:0,28:0:0:28:995:-89.6128,-8.42884,0	1/1:47:0,47:0:0:47:1692:-151.797,-14.1484,0	0/1:81:39,42:39:1396:42:1495:-110.125,0,-101.246	0/1:12:3,9:3:104:9:324:-25.7852,0,-6.08463	0/1:40:21,19:21:756:19:680:-49.3317,0,-56.1541	0/1:50:20,30:20:720:30:1076:-80.6946,0,-49.6683	0/1:125:68,57:68:2424:57:2030:-144.672,0,-180.172	0/1:117:72,44:72:2561:44:1571:-105.986,0,-193.784	0/1:51:41,10:41:1464:10:360:-17.3038,0,-114.597	0/1:113:67,46:67:2347:46:1648:-113.426,0,-176.505	1/1:7:0,7:0:0:7:243:-22.1561,-2.10721,0	1/1:66:0,66:0:0:66:2359:-212.068,-19.868,0	0/1:84:58,26:58:2084:26:924:-57.7237,0,-161.431	0/1:111:71,40:71:2532:40:1436:-95.5816,0,-194.458	0/1:101:62,39:62:2216:39:1404:-95.8584,0,-168.912	0/1:51:27,24:27:960:24:856:-61.9551,0,-71.3015	0/1:100:54,46:54:1940:46:1652:-118.371,0,-144.369	0/1:140:69,71:69:2484:71:2544:-185.603,0,-179.315	0/1:48:27,21:27:964:21:752:-53.025,0,-72.0227	1/1:84:0,84:0:0:84:3012:-269.847,-25.2865,0	1/1:57:0,57:0:0:57:2031:-182.116,-17.1587,0	1/1:33:0,33:0:0:33:1180:-106.213,-9.93399,0	0/1:86:49,37:49:1724:37:1314:-91.2922,0,-128.825	0/1:117:72,45:72:2580:45:1620:-110.5,0,-196.379	1/1:120:0,120:0:0:120:4272:-383.867,-36.1236,0	1/1:100:0,100:0:0:100:3574:-320.864,-30.103,0
chr01	14737888	.	CGGG	CGGC,TGGC	130033	PASS	AB=0.429387,0.564337;ABP=154.812,129.024;AC=143,43;AF=0.768817,0.231183;AN=186;AO=4262,1989;CIGAR=3M1X,1X2M1X;DP=6285;DPB=6285.75;DPRA=23,1.84506;EPP=9257.83,4322.07;EPPR=0;GTI=7;LEN=1,4;MEANALT=1.84615,2.5;MQM=53.8304,53.9693;MQMR=0;NS=93;NUMALT=2;ODDS=0.233312;PAIRED=0,0;PAIREDR=0;PAO=0,3;PQA=0,108;PQR=0;PRO=0;QA=151188,69621;QR=0;RO=0;RPL=4262,1988;RPP=9257.83,4313.39;RPPR=0;RPR=0,1;RUN=1,1;SAF=4262,1988;SAP=9257.83,4313.39;SAR=0,1;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5,0:0:0:5,0:176,0:-15.9629,-1.50515,0,-15.9629,-1.50515,-15.9629	1/2:72:0,38,34:0:0:38,34:1336,1201:-205.823,-97.5657,-86.1266,-108.608,0,-98.3732	1/1:68:0,67,0:0:0:67,0:2357,0:-211.098,-20.169,0,-211.098,-20.169,-211.098	1/1:93:0,93,0:0:0:93,0:3298,0:-296.302,-27.9958,0,-296.302,-27.9958,-296.302	1/1:8:0,8,0:0:0:8,0:284,0:-25.6763,-2.40824,0,-25.6763,-2.40824,-25.6763	1/1:9:0,9,0:0:0:9,0:320,0:-29.0647,-2.70927,0,-29.0647,-2.70927,-29.0647	1/2:86:0,42,43:0:0:42,43:1491,1503:-243.31,-122.172,-109.529,-121.208,0,-108.264	1/1:67:0,67,0:0:0:67,0:2380,0:-213.421,-20.169,0,-213.421,-20.169,-213.421	1/2:89:0,26,63:0:0:26,63:924,2220:-254.933,-179.95,-172.123,-75.3359,0,-56.371	1/1:103:0,102,1:0:0:102,1:3619,36:-324.559,-30.7051,0,-321.624,-27.4104,-321.323	1/1:73:0,73,0:0:0:73,0:2590,0:-232.983,-21.9752,0,-232.983,-21.9752,-232.983	1/1:58:0,58,0:0:0:58,0:1996,0:-178.922,-17.4597,0,-178.922,-17.4597,-178.922	1/2:77:0,34,43:0:0:34,43:1220,1514:-221.082,-123.264,-113.029,-98.1708,0,-85.2265	1/1:64:0,64,0:0:0:64,0:2234,0:-200.727,-19.2659,0,-200.727,-19.2659,-200.727	1/2:67:0,31,35:0:0:31,35:1093,1219:-187.496,-98.7362,-89.4042,-88.7505,0,-78.2145	1/1:34:0,34,0:0:0:34,0:1211,0:-108.941,-10.235,0,-108.941,-10.235,-108.941	1/1:86:0,85,0:0:0:85,0:2996,0:-266.16,-25.5876,0,-266.16,-25.5876,-266.16	1/2:66:0,30,35:0:0:30,35:1065,1235:-186.06,-100.299,-91.2676,-85.7547,0,-75.2186	1/1:61:0,61,0:0:0:61,0:2157,0:-193.316,-18.3628,0,-193.316,-18.3628,-193.316	1/1:129:0,127,0:0:0:127,0:4536,0:-407.364,-38.2308,0,-407.364,-38.2308,-407.364	1/2:105:0,53,52:0:0:53,52:1887,1804:-299.719,-146.569,-130.615,-153.5,0,-137.846	1/2:96:0,20,75:0:0:20,75:712,2616:-270.554,-212.54,-206.519,-58.0152,0,-35.438	1/1:43:0,43,0:0:0:43,0:1539,0:-138.21,-12.9443,0,-138.21,-12.9443,-138.21	1/2:69:0,18,51:0:0:18,51:648,1786:-197.895,-145.227,-139.808,-53.0246,0,-37.6721	1/1:27:0,27,0:0:0:27,0:948,0:-84.9854,-8.12781,0,-84.9854,-8.12781,-84.9854	1/2:198:0,83,115:0:0:83,115:2956,4012:-566.399,-325.716,-300.73,-240.676,0,-206.057	1/2:130:0,56,73:0:0:56,73:1982,2571:-369.081,-208.478,-191.62,-160.702,0,-138.726	1/1:44:0,44,0:0:0:44,0:1556,0:-139.275,-13.2453,0,-139.275,-13.2453,-139.275	1/1:132:0,132,0:0:0:132,0:4692,0:-421.447,-39.736,0,-421.447,-39.736,-421.447	1/1:39:0,39,0:0:0:39,0:1387,0:-123.766,-11.7402,0,-123.766,-11.7402,-123.766	1/2:60:0,29,31:0:0:29,31:1044,1103:-174.931,-90.0848,-81.355,-85.2027,0,-75.8708	1/1:3:0,3,0:0:0:3,0:108,0:-10.0609,-0.90309,0,-10.0609,-0.90309,-10.0609	1/1:4:0,4,0:0:0:4,0:140,0:-12.9285,-1.20412,0,-12.9285,-1.20412,-12.9285	2/2:5:0,0,5:0:0:0,5:0,175:-15.6167,-15.6167,-15.6167,-1.50515,-1.50515,0	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:36,0:-3.58923,-0.30103,0,-3.58923,-0.30103,-3.58923	1/2:233:0,121,110:0:0:121,110:4285,3851:-661.396,-313.114,-276.689,-348.279,0,-315.166	1/2:78:0,29,48:0:0:29,48:1029,1641:-216.164,-132.935,-124.206,-83.2313,0,-68.7818	1/2:76:0,35,41:0:0:35,41:1256,1414:-216.197,-114.282,-103.746,-102.265,0,-89.9226	2/2:1:0,0,1:0:0:0,1:0,36:-3.59317,-3.59317,-3.59317,-0.30103,-0.30103,0	1/2:72:0,30,40:0:0:30,40:1073,1390:-198.73,-111.621,-102.59,-87.1072,0,-75.066	1/1:35:0,35,0:0:0:35,0:1239,0:-111.27,-10.5361,0,-111.27,-10.5361,-111.27	1/1:60:0,60,0:0:0:60,0:2139,0:-191.584,-18.0618,0,-191.584,-18.0618,-191.584	1/1:118:0,116,1:0:0:116,1:4102,36:-368.134,-34.9195,0,-365.199,-31.9845,-364.898	1/1:71:0,71,0:0:0:71,0:2527,0:-226.776,-21.3731,0,-226.776,-21.3731,-226.776	1/1:28:0,28,0:0:0:28,0:1004,0:-90.2517,-8.42884,0,-90.2517,-8.42884,-90.2517	1/1:48:0,48,0:0:0:48,0:1706,0:-153.006,-14.4494,0,-153.006,-14.4494,-153.006	1/2:63:0,37,26:0:0:37,26:1328,914:-182.134,-74.6899,-63.5518,-107.797,0,-99.9703	1/2:115:0,60,53:0:0:60,53:2156,1852:-326.04,-150.324,-132.262,-175.778,0,-159.823	1/2:147:0,64,83:0:0:64,83:2281,2906:-421.632,-235.956,-216.69,-186.03,0,-161.044	1/1:77:0,76,1:0:0:76,1:2666,36:-239.38,-22.8783,0,-236.456,-19.5963,-236.155	1/1:7:0,7,0:0:0:7,0:244,0:-22.2847,-2.10721,0,-22.2847,-2.10721,-22.2847	1/1:63:0,63,0:0:0:63,0:2205,0:-198.056,-18.9649,0,-198.056,-18.9649,-198.056	1/1:14:0,14,0:0:0:14,0:504,0:-45.6802,-4.21442,0,-45.6802,-4.21442,-45.6802	1/1:4:0,4,0:0:0:4,0:144,0:-13.0936,-1.20412,0,-13.0936,-1.20412,-13.0936	1/1:46:0,46,0:0:0:46,0:1632,0:-145.542,-13.8474,0,-145.542,-13.8474,-145.542	1/1:26:0,26,0:0:0:26,0:933,0:-84.0984,-7.82678,0,-84.0984,-7.82678,-84.0984	1/1:3:0,3,0:0:0:3,0:108,0:-10.0724,-0.90309,0,-10.0724,-0.90309,-10.0724	1/2:4:0,1,3:0:0:1,3:36,108:-12.1058,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chr01	14737897	.	A	G	84864.8	PASS	AB=0.555657;ABP=180.669;AC=41;AF=0.218085;AN=188;AO=3680;CIGAR=1X;DP=12486;DPB=12486;DPRA=1.65289;EPP=7994.03;EPPR=19103.3;GTI=6;LEN=1;MEANALT=1.1;MQM=56.7598;MQMR=56.9239;NS=94;NUMALT=1;ODDS=0.977445;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130636;QR=313773;RO=8796;RPL=1958;RPP=35.8751;RPPR=16.2979;RPR=1722;RUN=1;SAF=1958;SAP=35.8751;SAR=1722;SRF=4282;SRP=16.2979;SRR=4514;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.382	0/1:135:66,69:66:2368:69:2462:-180.849,0,-172.233	0/0:193:193,0:193:6890:0:0:0,-58.0988,-618.835	0/0:228:228,0:228:8128:0:0:0,-68.6348,-730.748	0/0:33:33,0:33:1175:0:0:0,-9.93399,-105.827	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.0063	0/1:184:91,93:91:3230:93:3323:-243.673,0,-235.144	0/0:150:150,0:150:5367:0:0:0,-45.1545,-482.095	0/1:156:64,92:64:2280:92:3255:-244.967,0,-158.18	0/0:167:166,1:166:5940:1:36:0,-46.6763,-527.937	0/0:126:126,0:126:4504:0:0:0,-37.9298,-405.15	0/0:143:141,0:141:5046:0:0:0,-42.4452,-452.813	0/1:151:71,80:71:2535:80:2827:-208.855,0,-181.234	0/0:111:111,0:111:3946:0:0:0,-33.4143,-354.795	0/1:117:53,64:53:1888:64:2296:-171.258,0,-134.735	0/0:81:81,0:81:2887:0:0:0,-24.3834,-259.709	0/0:130:129,0:129:4621:0:0:0,-38.8329,-411.886	0/1:94:46,48:46:1652:48:1710:-125.618,0,-119.455	0/0:95:95,0:95:3387:0:0:0,-28.5978,-304.068	0/0:218:218,0:218:7794:0:0:0,-65.6245,-700.315	0/1:214:104,109:104:3699:109:3841:-280.862,0,-268.068	0/1:168:37,131:37:1328:131:4648:-367.677,0,-69.2319	0/0:81:80,0:80:2860:0:0:0,-24.0824,-256.14	0/1:105:38,67:38:1360:67:2395:-183.746,0,-90.8917	0/0:62:62,0:62:2215:0:0:0,-18.6639,-198.785	0/1:336:157,178:157:5607:178:6338:-468.671,0,-403.293	0/1:344:156,188:156:5545:188:6618:-491.072,0,-394.673	0/0:69:69,0:69:2456:0:0:0,-20.7711,-220.253	0/0:327:327,0:327:11677:0:0:0,-98.4368,-1049.29	0/0:108:108,0:108:3843:0:0:0,-32.5112,-344.818	0/1:104:54,50:54:1928:50:1741:-125.488,0,-142.146	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.538	0/0:25:25,0:25:879:0:0:0,-7.52575,-79.4065	0/1:7:1,6:1:36:6:216:-17.0874,0,-1.49106	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.373	0/1:385:201,184:201:7159:184:6580:-476.157,0,-527.435	0/1:143:69,74:69:2461:74:2652:-195.592,0,-178.022	0/1:137:70,67:70:2487:67:2334:-168.235,0,-182.244	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/1:182:83,99:83:2952:99:3479:-256.824,0,-209.891	0/0:75:75,0:75:2676:0:0:0,-22.5772,-240.546	0/0:159:159,0:159:5645:0:0:0,-47.8638,-507.122	0/0:181:179,2:179:6387:2:72:0,-47.6522,-567.347	0/0:118:118,0:118:4189:0:0:0,-35.5215,-376.453	0/0:94:92,1:92:3282:1:36:0,-24.6774,-291.662	0/0:104:104,0:104:3708:0:0:0,-31.3071,-332.963	0/1:190:98,92:98:3496:92:3239:-234.481,0,-257.195	0/1:151:77,74:77:2756:74:2635:-191.525,0,-201.791	0/1:257:99,158:99:3552:158:5634:-428.893,0,-242.239	0/0:155:154,1:154:5489:1:36:0,-43.0766,-490.189	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8716	0/0:169:169,0:169:6034:0:0:0,-50.8741,-542.277	0/0:52:51,0:51:1824:0:0:0,-15.3525,-164.134	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.1204	0/0:124:124,0:124:4426:0:0:0,-37.3277,-396.747	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.64	0/0:19:19,0:19:667:0:0:0,-5.71957,-60.3519	0/1:31:18,13:18:648:13:468:-33.125,0,-49.319	0/0:125:125,0:125:4458:0:0:0,-37.6287,-400.489	0/0:187:185,2:185:6636:2:72:0,-49.4583,-588.56	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6502	0/0:244:243,1:243:8707:1:36:0,-69.853,-778.983	0/1:176:74,102:74:2624:102:3607:-271.459,0,-183.106	0/1:100:56,44:56:1995:44:1557:-109.637,0,-149.455	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.261	0/0:154:154,0:154:5491:0:0:0,-46.3586,-492.933	0/0:208:206,1:206:7331:1:32:0,-59.4238,-655.774	0/0:99:99,0:99:3514:0:0:0,-29.802,-315.902	0/0:92:92,0:92:3277:0:0:0,-27.6948,-294.485	0/1:112:53,59:53:1908:59:2089:-154.412,0,-137.943	0/1:35:15,20:15:527:20:697:-52.5043,0,-37.1198	0/1:129:54,75:54:1932:75:2680:-202.368,0,-134.399	0/1:163:81,82:81:2873:82:2915:-213.124,0,-208.322	0/1:203:95,108:95:3388:108:3783:-278.955,0,-243.413	0/1:257:98,159:98:3466:159:5645:-428.979,0,-234.45	0/1:148:33,115:33:1167:115:4113:-323.689,0,-60.7049	0/1:242:97,145:97:3475:145:5165:-391.282,0,-239.118	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.1844	0/0:148:148,0:148:5289:0:0:0,-44.5524,-475.636	0/1:184:57,127:57:2039:127:4468:-345.757,0,-127.793	0/1:188:76,111:76:2705:111:3969:-300.458,0,-186.834	0/1:141:60,81:60:2152:81:2887:-217.285,0,-151.108	0/1:101:48,53:48:1724:53:1883:-139.279,0,-124.985	0/1:142:68,74:68:2423:74:2647:-195.322,0,-174.768	0/1:233:118,115:118:4222:115:4093:-296.074,0,-308.758	0/1:64:30,34:30:1080:34:1216:-89.7783,0,-77.7114	0/0:145:145,0:145:5169:0:0:0,-43.6493,-463.74	0/0:132:132,0:132:4671:0:0:0,-39.736,-419.405	0/0:90:89,1:89:3170:1:25:0,-24.5928,-282.719	0/1:211:102,109:102:3613:109:3894:-286.293,0,-259.531	0/1:180:61,119:61:2175:119:4220:-325.148,0,-141.385	0/0:219:218,1:218:7780:1:36:0,-62.3299,-695.707	0/0:178:178,0:178:6362:0:0:0,-53.5833,-571.771
chr01	14737900	.	C	T	230095	PASS	AB=0.440146;ABP=208.106;AC=147;AF=0.781915;AN=188;AO=8752;CIGAR=1X;DP=12458;DPB=12458;DPRA=0;EPP=19007.7;EPPR=8041.8;GTI=6;LEN=1;MEANALT=1.04255;MQM=56.9797;MQMR=56.7969;NS=94;NUMALT=1;ODDS=0.433527;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309338;QR=130322;RO=3702;RPL=4189;RPP=37.7152;RPPR=36.2358;RPR=4563;RUN=1;SAF=4189;SAP=37.7152;SAR=4563;SRF=1970;SRP=36.2358;SRR=1732;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1421:-127.964,-12.0412,0	0/1:135:70,65:70:2456:65:2313:-167.298,0,-179.909	1/1:199:0,199:0:0:199:7057:-633.964,-59.905,0	1/1:226:0,226:0:0:226:7977:-717.369,-68.0328,0	1/1:32:0,32:0:0:32:1148:-103.4,-9.63296,0	1/1:19:0,19:0:0:19:680:-61.452,-5.71957,0	0/1:187:98,89:98:3457:89:3135:-225.662,0,-254.903	1/1:151:0,151:0:0:151:5378:-482.979,-45.4555,0	0/1:158:93,65:93:3272:65:2311:-160.381,0,-245.986	1/1:163:1,162:1:36:162:5736:-511.253,-45.4722,0	1/1:122:0,122:0:0:122:4301:-386.923,-36.7257,0	1/1:144:0,144:0:0:144:5071:-455.751,-43.3483,0	0/1:151:81,69:81:2818:69:2415:-170.561,0,-208.032	1/1:111:0,111:0:0:111:3915:-352.086,-33.4143,0	0/1:113:65,48:65:2259:48:1707:-119.67,0,-169.187	1/1:80:0,80:0:0:80:2798:-251.873,-24.0824,0	1/1:129:0,129:0:0:129:4555:-406.773,-38.8329,0	0/1:96:51,45:51:1775:45:1567:-111.377,0,-130.865	1/1:95:0,95:0:0:95:3350:-300.678,-28.5979,0	1/1:219:0,219:0:0:219:7724:-694.288,-65.9256,0	0/1:212:109,103:109:3834:103:3659:-265.037,0,-280.973	0/1:167:129,38:129:4540:38:1348:-71.3326,0,-358.174	1/1:75:0,75:0:0:75:2640:-237.059,-22.5773,0	0/1:106:68,38:68:2376:38:1338:-88.608,0,-181.779	1/1:62:0,62:0:0:62:2177:-195.4,-18.6639,0	0/1:336:179,157:179:6331:157:5529:-396.223,0,-468.147	0/1:344:186,158:186:6585:158:5626:-402.259,0,-488.262	1/1:68:0,68:0:0:68:2392:-214.488,-20.47,0	1/1:324:0,324:0:0:324:11550:-1038.05,-97.5337,0	1/1:112:0,112:0:0:112:3983:-357.292,-33.7154,0	0/1:102:49,53:49:1713:53:1866:-137.364,0,-123.629	1/1:5:0,5:0:0:5:180:-16.538,-1.50515,0	1/1:25:0,25:0:0:25:851:-76.8804,-7.52575,0	0/1:7:6,1:6:201:1:36:-1.49107,0,-15.8993	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:12:0,12:0:0:12:420:-38.1258,-3.61236,0	0/1:381:183,198:183:6432:198:6977:-512.675,0,-464.114	0/1:142:76,66:76:2667:66:2315:-165.37,0,-197.3	0/1:138:66,71:66:2332:71:2506:-183.882,0,-167.67	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69008	0/1:181:99,82:99:3498:82:2936:-209.534,0,-258.76	1/1:77:0,77:0:0:77:2747:-246.927,-23.1793,0	1/1:157:0,157:0:0:157:5557:-499.657,-47.2617,0	1/1:184:3,180:3:108:180:6338:-558.988,-45.2629,0	1/1:117:1,116:1:36:116:4094:-364.353,-31.6222,0	1/1:99:1,98:1:36:98:3425:-304.492,-26.2037,0	1/1:103:0,103:0:0:103:3633:-326.342,-31.0061,0	0/1:191:93,98:93:3276:98:3487:-256.09,0,-237.515	0/1:149:75,74:75:2629:74:2600:-189.243,0,-191.178	0/1:258:154,103:154:5440:103:3649:-250.625,0,-411.363	1/1:154:1,153:1:36:153:5374:-480.063,-42.7756,0	1/1:19:0,19:0:0:19:672:-60.7895,-5.71957,0	1/1:170:0,170:0:0:170:5994:-539.063,-51.1751,0	1/1:57:0,57:0:0:57:2020:-182.05,-17.1587,0	1/1:14:0,14:0:0:14:504:-45.4824,-4.21442,0	1/1:126:0,126:0:0:126:4479:-401.502,-37.9298,0	1/1:32:0,32:0:0:32:1143:-102.95,-9.63296,0	1/1:19:0,19:0:0:19:668:-60.4433,-5.71957,0	0/1:29:12,17:12:428:17:588:-44.5134,0,-30.1262	1/1:123:0,123:0:0:123:4329:-389.523,-37.0267,0	1/1:185:2,183:2:72:183:6403:-568.763,-48.8563,0	1/1:9:0,9:0:0:9:303:-27.5063,-2.70927,0	1/1:238:1,237:1:36:237:8402:-751.628,-68.0469,0	0/1:172:103,69:103:3622:69:2436:-167.424,0,-274.016	0/1:96:44,52:44:1562:52:1834:-136.329,0,-111.226	1/1:83:0,83:0:0:83:2958:-266.275,-24.9855,0	1/1:150:0,150:0:0:150:5339:-479.785,-45.1545,0	1/1:208:1,207:1:36:207:7287:-651.556,-59.016,0	1/1:98:0,98:0:0:98:3477:-312.732,-29.5009,0	1/1:89:0,89:0:0:89:3123:-280.759,-26.7917,0	0/1:112:59,53:59:2080:53:1874:-134.886,0,-153.53	0/1:36:22,14:22:779:14:504:-34.7532,0,-59.5832	0/1:130:75,55:75:2661:55:1933:-134.797,0,-200.383	0/1:162:83,79:83:2889:79:2802:-202.257,0,-211.233	0/1:200:106,94:106:3702:94:3297:-236.262,0,-272.679	0/1:259:162,97:162:5753:97:3390:-227.019,0,-438.048	0/1:146:115,31:115:4099:31:1069:-52.5137,0,-323.048	0/1:245:148,97:148:5210:97:3392:-230.896,0,-394.31	1/1:26:0,26:0:0:26:914:-82.519,-7.82678,0	1/1:149:2,147:2:68:147:5226:-463.527,-38.3958,0	0/1:192:129,63:129:4535:63:2224:-142.065,0,-349.518	0/1:191:112,79:112:3938:79:2808:-195.096,0,-296.908	0/1:138:79,59:79:2765:59:2108:-148.176,0,-207.235	0/1:98:52,46:52:1835:46:1631:-117.526,0,-135.866	0/1:141:75,66:75:2638:66:2317:-165.861,0,-194.922	0/1:234:114,120:114:4055:120:4260:-311.578,0,-293.805	0/1:65:36,29:36:1259:29:1006:-70.9665,0,-93.4558	1/1:145:0,145:0:0:145:5127:-460.128,-43.6494,0	1/1:133:0,133:0:0:133:4724:-424.099,-40.037,0	1/1:89:1,88:1:36:88:3120:-277.272,-23.1934,0	0/1:207:109,98:109:3839:98:3468:-248.329,0,-282.656	0/1:181:121,60:121:4210:60:2118:-135.961,0,-324.159	1/1:222:1,221:1:36:221:7869:-703.602,-63.233,0	1/1:173:0,173:0:0:173:6118:-549.921,-52.0782,0
chr01	14737935	.	CGC	TGG,TGC	136856	PASS	AB=0.461994,0.534268;ABP=43.2847,35.7515;AC=148,40;AF=0.787234,0.212766;AN=188;AO=4738,1719;CIGAR=1X1M1X,1X2M;DP=6488;DPB=6488;DPRA=0,1.44512;EPP=10118.5,3718.42;EPPR=5.18177;GTI=3;LEN=3,1;MEANALT=1.78723,2.34091;MQM=59.8419,59.9703;MQMR=60;NS=94;NUMALT=2;ODDS=0.819347;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165708,61354;QR=36;RO=1;RPL=4718,1717;RPP=10118.5,3718.42;RPPR=5.18177;RPR=20,2;RUN=1,1;SAF=0,0;SAP=10291.4,3735.77;SAR=4738,1719;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37,0:0:0:37,0:1308,0:-118.021,-11.1381,0,-118.021,-11.1381,-118.021	1/2:65:0,30,35:0:0:30,35:1045,1233:-185.714,-100.736,-91.7051,-85.3275,0,-74.7915	1/1:139:0,139,0:0:0:139,0:4765,0:-428.977,-41.8432,0,-428.977,-41.8432,-428.977	1/1:142:0,140,0:0:0:140,0:4911,0:-441.809,-42.1442,0,-441.809,-42.1442,-441.809	1/1:25:0,25,0:0:0:25,0:890,0:-80.4189,-7.52575,0,-80.4189,-7.52575,-80.4189	1/1:10:0,10,0:0:0:10,0:356,0:-32.3815,-3.0103,0,-32.3815,-3.0103,-32.3815	1/2:105:0,51,53:0:0:51,53:1781,1884:-298.496,-153.629,-138.277,-144.966,0,-129.011	1/1:89:0,89,0:0:0:89,0:3150,0:-283.621,-26.7917,0,-283.621,-26.7917,-283.621	1/2:73:0,43,30:0:0:43,30:1514,1080:-211.733,-88.4823,-75.5381,-123.608,0,-114.577	1/1:64:0,64,0:0:0:64,0:2254,0:-203.122,-19.2659,0,-203.122,-19.2659,-203.122	1/1:54:0,54,0:0:0:54,0:1918,0:-172.897,-16.2556,0,-172.897,-16.2556,-172.897	1/1:91:0,90,0:0:0:90,0:3173,0:-285.433,-27.0927,0,-285.433,-27.0927,-285.433	1/2:75:0,37,38:0:0:37,38:1330,1360:-219.767,-111.261,-100.123,-108.864,0,-97.4252	1/1:47:0,47,0:0:0:47,0:1640,0:-147.885,-14.1484,0,-147.885,-14.1484,-147.885	1/2:49:0,23,26:0:0:23,26:805,932:-141.863,-76.3721,-69.4484,-65.8443,0,-58.0176	1/1:50:0,49,0:0:0:49,0:1733,0:-155.893,-14.7505,0,-155.893,-14.7505,-155.893	1/1:49:0,49,0:0:0:49,0:1705,0:-153.732,-14.7505,0,-153.732,-14.7505,-153.732	1/2:29:0,14,15:0:0:14,15:485,540:-83.8324,-44.4211,-40.2067,-39.7642,0,-35.2487	1/1:37:0,37,0:0:0:37,0:1314,0:-118.562,-11.1381,0,-118.562,-11.1381,-118.562	1/1:96:0,95,0:0:0:95,0:3296,0:-296.592,-28.5979,0,-296.592,-28.5979,-296.592	1/2:113:0,53,60:0:0:53,60:1844,2127:-323.566,-173.635,-157.681,-150.282,0,-132.22	1/2:76:0,20,56:0:0:20,56:691,2016:-220.989,-164.854,-158.834,-56.4836,0,-39.626	1/1:37:0,37,0:0:0:37,0:1245,0:-112.114,-11.1381,0,-112.114,-11.1381,-112.114	1/2:39:0,22,17:0:0:22,17:776,608:-113.118,-49.9345,-43.3119,-63.5389,0,-58.4214	1/1:37:0,36,0:0:0:36,0:1257,0:-113.13,-10.8371,0,-113.13,-10.8371,-113.13	1/2:145:1,77,67:1:36:77,67:2650,2370:-405.001,-190.089,-169.847,-212.265,0,-195.034	1/2:224:0,108,114:0:0:108,114:3745,4060:-635.283,-330.904,-298.393,-304.37,0,-270.053	1/1:25:0,25,0:0:0:25,0:868,0:-78.4341,-7.52575,0,-78.4341,-7.52575,-78.4341	1/1:201:0,201,0:0:0:201,0:7111,0:-640.055,-60.507,0,-640.055,-60.507,-640.055	1/1:78:0,77,0:0:0:77,0:2691,0:-242.196,-23.1793,0,-242.196,-23.1793,-242.196	1/2:44:0,24,19:0:0:24,19:830,680:-122.887,-55.4499,-48.2252,-67.43,0,-61.7105	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:21:0,21,0:0:0:21,0:740,0:-66.9223,-6.32163,0,-66.9223,-6.32163,-66.9223	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:11:0,11,0:0:0:11,0:383,0:-34.8037,-3.31133,0,-34.8037,-3.31133,-34.8037	1/2:158:0,82,75:0:0:82,75:2902,2681:-454.958,-218.597,-193.913,-236.357,0,-213.779	1/2:68:0,39,28:0:0:39,28:1374,1008:-194.108,-82.2477,-70.5075,-111.857,0,-103.428	1/2:62:0,36,26:0:0:36,26:1280,928:-180.321,-76.0115,-65.1744,-104.666,0,-96.8392	1/1:2:0,2,0:0:0:2,0:69,0:-6.55254,-0.60206,0,-6.55254,-0.60206,-6.55254	1/2:108:0,50,57:0:0:50,57:1758,2010:-306.858,-163.759,-148.708,-143.198,0,-126.04	1/1:43:0,42,0:0:0:42,0:1458,0:-131.153,-12.6433,0,-131.153,-12.6433,-131.153	1/1:108:0,107,0:0:0:107,0:3705,0:-333.384,-32.2102,0,-333.384,-32.2102,-333.384	1/1:68:0,66,1:0:0:66,1:2315,36:-207.299,-19.868,0,-204.361,-16.8506,-204.06	1/1:49:0,49,0:0:0:49,0:1720,0:-155.079,-14.7505,0,-155.079,-14.7505,-155.079	1/1:71:0,71,0:0:0:71,0:2478,0:-223.272,-21.3731,0,-223.272,-21.3731,-223.272	1/1:61:0,61,0:0:0:61,0:2144,0:-193.226,-18.3628,0,-193.226,-18.3628,-193.226	1/2:131:0,63,68:0:0:63,68:2225,2418:-378.598,-197.406,-178.441,-181.546,0,-161.076	1/2:38:0,16,22:0:0:16,22:545,788:-108.827,-64.6198,-59.8033,-44.555,0,-37.9323	1/2:118:0,41,77:0:0:41,77:1385,2756:-337.334,-225.103,-212.76,-112.576,0,-89.3963	1/1:83:0,82,0:0:0:82,0:2887,0:-259.706,-24.6845,0,-259.706,-24.6845,-259.706	1/1:13:0,13,0:0:0:13,0:460,0:-41.7348,-3.91339,0,-41.7348,-3.91339,-41.7348	1/1:113:0,111,0:0:0:111,0:3884,0:-349.437,-33.4143,0,-349.437,-33.4143,-349.437	1/1:44:0,44,0:0:0:44,0:1511,0:-136.275,-13.2453,0,-136.275,-13.2453,-136.275	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:81:0,81,0:0:0:81,0:2855,0:-257.103,-24.3834,0,-257.103,-24.3834,-257.103	1/1:8:0,8,0:0:0:8,0:276,0:-25.1749,-2.40824,0,-25.1749,-2.40824,-25.1749	1/1:17:0,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chr01	14835127	.	T	C	36829.7	PASS	AB=0.490213;ABP=6.79307;AC=41;AF=0.218085;AN=188;AO=2240;CIGAR=1X;DP=9768;DPB=9768;DPRA=1.32954;EPP=4841.09;EPPR=16224.1;GTI=0;LEN=1;MEANALT=1.02222;MQM=59.9719;MQMR=59.9924;NS=94;NUMALT=1;ODDS=5.82112;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79287;QR=266967;RO=7526;RPL=3;RPP=4841.09;RPPR=16224.1;RPR=2237;RUN=1;SAF=0;SAP=4867.11;SAR=2240;SRF=0;SRP=16345.5;SRR=7526;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:74:39,35:39:1404:35:1260:-91.4293,0,-104.383	0/0:138:138,0:138:4897:0:0:0,-41.5421,-440.885	0/0:370:369,1:369:13080:1:36:0,-107.783,-1173.42	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:30:30,0:30:1056:0:0:0,-9.0309,-95.3509	0/1:86:48,38:48:1686:38:1349:-95.8206,0,-126.129	0/0:123:123,0:123:4387:0:0:0,-37.0267,-395.004	0/1:65:43,22:43:1527:22:783:-51.226,0,-118.155	0/0:90:90,0:90:3207:0:0:0,-27.0927,-288.853	0/0:81:81,0:81:2839:0:0:0,-24.3834,-255.749	0/0:87:87,0:87:3074:0:0:0,-26.1896,-276.89	0/1:87:38,49:38:1333:49:1721:-128.981,0,-94.0782	0/0:58:58,0:58:2041:0:0:0,-17.4597,-183.96	0/1:72:50,22:50:1757:22:771:-48.0361,0,-136.737	0/0:53:53,0:53:1876:0:0:0,-15.9546,-169.119	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/1:35:20,15:20:690:15:517:-36.3186,0,-51.8833	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/0:242:242,0:242:8643:0:0:0,-72.8493,-777.867	0/1:217:129,88:129:4557:88:3102:-214.083,0,-344.977	0/1:126:43,83:43:1518:83:2913:-224.475,0,-98.9818	0/0:135:135,0:135:4785:0:0:0,-40.639,-430.807	0/1:61:25,36:25:879:36:1274:-96.5987,0,-61.064	0/0:73:73,0:73:2585:0:0:0,-21.9752,-232.898	0/1:267:133,134:133:4708:134:4758:-348.003,0,-343.508	0/1:251:127,124:127:4478:124:4408:-321.334,0,-327.634	0/0:27:27,0:27:951:0:0:0,-8.12781,-85.9043	0/0:317:317,0:317:11330:0:0:0,-95.4265,-1019.58	0/0:167:167,0:167:5930:0:0:0,-50.272,-533.813	0/1:118:71,47:71:2525:47:1673:-115.334,0,-191.979	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:8:3,5:3:99:5:180:-14.1438,0,-6.82834	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:85:85,0:85:2995:0:0:0,-25.5875,-269.782	0/1:208:108,100:108:3848:100:3528:-255.116,0,-283.901	0/1:160:76,84:76:2707:84:2972:-219.549,0,-195.709	0/1:46:23,23:23:816:23:819:-60.185,0,-59.9143	0/1:7:4,3:4:135:3:108:-7.96796,0,-10.3753	0/1:139:80,59:80:2855:59:2107:-148.055,0,-215.344	0/0:42:42,0:42:1448:0:0:0,-12.6433,-130.611	0/0:151:150,0:150:5325:0:0:0,-45.1545,-479.109	0/0:63:63,0:63:2226:0:0:0,-18.9649,-200.604	0/0:51:51,0:51:1768:0:0:0,-15.3525,-159.4	0/0:100:100,0:100:3551:0:0:0,-30.103,-319.781	0/0:121:121,0:121:4323:0:0:0,-36.4246,-389.246	0/1:239:91,148:91:3227:148:5231:-398.896,0,-218.708	0/1:107:67,40:67:2347:40:1419:-95.7964,0,-179.278	0/1:112:56,56:56:2004:56:1964:-143.318,0,-146.918	0/0:131:131,0:131:4667:0:0:0,-39.4349,-420.193	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:155:155,0:155:5508:0:0:0,-46.6596,-495.851	0/0:95:95,0:95:3368:0:0:0,-28.5978,-303.339	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:205:205,0:205:7296:0:0:0,-61.7111,-656.694	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:91:90,1:90:3207:1:36:0,-23.7955,-285.255	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.618	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/0:250:250,0:250:8874:0:0:0,-75.2575,-798.652	0/1:161:70,91:70:2495:91:3221:-241.647,0,-176.337	0/1:72:46,26:46:1610:26:928:-62.1641,0,-123.514	0/0:110:110,0:110:3907:0:0:0,-33.1133,-351.826	0/0:188:180,8:180:6424:8:284:0,-30.6903,-552.347	0/0:174:173,1:173:6167:1:36:0,-48.7809,-551.531	0/0:51:51,0:51:1799:0:0:0,-15.3525,-162.191	0/0:74:74,0:74:2611:0:0:0,-22.2762,-235.239	0/1:37:24,13:24:852:13:460:-30.5973,0,-65.8623	0/1:60:34,26:34:1208:26:913:-64.4217,0,-90.9643	0/1:135:78,57:78:2768:57:2016:-141.073,0,-208.721	0/1:113:52,61:52:1847:61:2128:-157.757,0,-132.493	0/1:118:58,60:58:2058:60:2113:-154.916,0,-149.969	0/1:268:140,128:140:4986:128:4608:-334.205,0,-368.214	0/1:95:66,28:66:2325:28:981:-59.9447,0,-180.853	0/1:105:52,53:52:1822:53:1883:-138.14,0,-132.652	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:132:132,0:132:4675:0:0:0,-39.736,-420.913	0/1:88:32,56:32:1131:56:1966:-150.721,0,-75.6071	0/1:208:106,102:106:3770:102:3649:-265.998,0,-276.886	0/1:80:47,33:47:1660:33:1155:-80.1732,0,-125.605	0/1:72:31,41:31:1100:41:1451:-109.211,0,-77.6361	0/1:48:26,22:26:911:22:774:-55.5305,0,-67.8555	0/1:155:65,90:65:2269:90:3196:-241.203,0,-157.813	0/1:21:7,14:7:248:14:491:-38.1995,0,-16.3426	0/0:76:76,0:76:2695:0:0:0,-22.8783,-242.795	0/0:68:68,0:68:2386:0:0:0,-20.47,-214.995	0/0:57:57,0:57:2026:0:0:0,-17.1587,-182.611	0/1:132:79,53:79:2774:53:1861:-128.031,0,-210.167	0/1:74:19,55:19:680:55:1920:-150.796,0,-39.2529	0/0:238:238,0:238:8492:0:0:0,-71.6451,-764.282	0/0:109:109,0:109:3818:0:0:0,-32.8123,-343.821
chr01	14836939	.	A	G	27970.3	PASS	AB=0.520827;ABP=15.0401;AC=41;AF=0.218085;AN=188;AO=1675;CIGAR=1X;DP=6659;DPB=6659;DPRA=1.35443;EPP=3631.55;EPPR=10751.9;GTI=3;LEN=1;MEANALT=1.04545;MQM=59.9648;MQMR=59.9934;NS=94;NUMALT=1;ODDS=0.846196;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59331;QR=178264;RO=4982;RPL=0;RPP=3640.23;RPPR=10803.9;RPR=1675;RUN=1;SAF=1;SAP=3631.55;SAR=1674;SRF=8;SRP=10751.9;SRR=4974;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:72:34,38:34:1207:38:1360:-101.026,0,-87.2611	0/0:176:176,0:176:6324:0:0:0,-52.9813,-569.249	0/0:242:242,0:242:8675:0:0:0,-72.8493,-780.74	0/0:28:26,2:26:936:2:72:0,-1.59212,-77.7227	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:98:47,51:47:1679:51:1819:-134.49,0,-121.895	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/1:67:29,38:29:1040:38:1356:-102.171,0,-73.7454	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.383	0/1:49:29,20:29:1021:20:711:-49.5652,0,-77.4498	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:55:23,32:23:828:32:1139:-86.2617,0,-58.2875	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/1:43:21,22:21:743:22:784:-57.9396,0,-54.249	0/0:51:50,1:50:1800:1:36:0,-11.7543,-158.684	0/0:137:137,0:137:4907:0:0:0,-41.2411,-441.78	0/1:111:60,51:60:2152:51:1816:-130.307,0,-160.533	0/1:123:38,85:38:1360:85:3006:-233.745,0,-85.6739	0/0:69:69,0:69:2439:0:0:0,-20.7711,-219.763	0/1:72:28,44:28:1004:44:1554:-118.476,0,-69.0017	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:131:62,69:62:2224:69:2443:-180.691,0,-160.986	0/1:180:87,93:87:3128:93:3294:-242.495,0,-227.56	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:184:183,1:183:6576:1:36:0,-51.7912,-588.32	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.56	0/1:83:43,40:43:1532:40:1420:-103.112,0,-113.188	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:27:27,0:27:948:0:0:0,-8.12781,-85.6319	0/1:135:69,66:69:2472:66:2336:-169.859,0,-182.095	0/1:92:41,50:41:1468:50:1758:-130.749,0,-104.663	0/1:42:14,28:14:504:28:1000:-77.6721,0,-33.0548	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:93:43,50:43:1539:50:1776:-132.127,0,-110.807	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.932	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.568	0/1:109:42,67:42:1512:67:2370:-180.746,0,-103.562	0/1:78:44,34:44:1549:34:1190:-83.9207,0,-116.197	0/1:145:62,83:62:2232:83:2955:-222.535,0,-157.494	0/0:102:102,0:102:3647:0:0:0,-30.7051,-328.434	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:158:157,1:157:5632:1:36:0,-43.9645,-503.401	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/0:95:95,0:95:3392:0:0:0,-28.5978,-305.493	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:121:121,0:121:4339:0:0:0,-36.4246,-390.684	0/1:129:66,63:66:2325:63:2230:-162.131,0,-170.674	0/1:39:15,24:15:531:24:852:-65.2602,0,-36.3817	0/0:89:89,0:89:3186:0:0:0,-26.7917,-286.962	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.472	0/1:55:32,23:32:1106:23:804:-56.1199,0,-83.2857	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/1:103:53,50:53:1900:50:1760:-127.676,0,-140.272	0/1:95:38,57:38:1364:57:2015:-153.025,0,-94.4629	0/1:79:36,43:36:1281:43:1536:-114.752,0,-91.8099	0/1:117:59,58:59:2116:58:2047:-149.271,0,-155.488	0/1:50:28,22:28:996:22:761:-53.7551,0,-74.9034	0/1:88:52,36:52:1868:36:1268:-87.9291,0,-141.909	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:70:70,0:70:2498:0:0:0,-21.0721,-225.071	0/1:74:38,36:38:1368:36:1275:-92.7761,0,-101.145	0/1:134:57,76:57:2027:76:2705:-203.297,0,-142.305	0/1:49:28,21:28:1008:21:748:-52.8948,0,-76.2721	0/1:63:42,21:42:1499:21:741:-48.0481,0,-116.239	0/1:53:31,22:31:1116:22:779:-54.4775,0,-84.7971	0/1:98:53,45:53:1891:45:1607:-115.418,0,-140.967	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/1:89:45,44:45:1616:44:1567:-114.53,0,-118.938	0/1:58:19,39:19:665:39:1333:-102.31,0,-42.713	0/0:88:88,0:88:3168:0:0:0,-26.4906,-285.343	0/0:80:80,0:80:2846:0:0:0,-24.0824,-256.378
chr01	14836969	.	C	T	96056.1	PASS	AB=0.461291;ABP=43.5247;AC=148;AF=0.787234;AN=188;AO=4714;CIGAR=1X;DP=6403;DPB=6403;DPRA=9.82488;EPP=10187.3;EPPR=3646.76;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9951;MQMR=59.9698;NS=94;NUMALT=1;ODDS=0.668852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164839;QR=60350;RO=1686;RPL=4714;RPP=10239.3;RPPR=3664.11;RPR=0;RUN=1;SAF=6;SAP=10187.3;SAR=4708;SRF=2;SRP=3646.76;SRR=1684;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1528:-137.813,-12.9443,0	0/1:71:37,34:37:1332:34:1156:-82.9634,0,-98.8093	1/1:161:0,161:0:0:161:5629:-506.736,-48.4658,0	1/1:228:0,228:0:0:228:8043:-723.9,-68.6348,0	1/1:25:2,23:2:72:23:790:-64.5758,-0.689028,0	1/1:25:0,25:0:0:25:884:-79.8784,-7.52575,0	0/1:95:50,45:50:1788:45:1604:-116.052,0,-132.605	1/1:68:0,68:0:0:68:2390:-215.355,-20.47,0	0/1:67:39,28:39:1400:28:985:-68.7925,0,-106.13	1/1:50:0,50:0:0:50:1738:-156.7,-15.0515,0	1/1:46:0,46:0:0:46:1613:-145.458,-13.8474,0	1/1:66:0,66:0:0:66:2313:-208.431,-19.868,0	0/1:45:18,26:18:644:26:901:-67.797,0,-44.6856	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:56:32,24:32:1144:24:860:-60.8642,0,-86.4118	1/1:43:0,43:0:0:43:1516:-136.733,-12.9443,0	1/1:37:0,37:0:0:37:1305:-117.749,-11.1381,0	0/1:42:23,19:23:819:19:672:-48.1636,0,-61.3883	1/1:49:0,49:0:0:49:1692:-152.558,-14.7505,0	1/1:127:0,127:0:0:127:4452:-400.857,-38.2308,0	0/1:108:51,57:51:1820:57:1967:-144.79,0,-131.57	0/1:126:88,38:88:3148:38:1289:-78.3725,0,-245.616	1/1:63:0,63:0:0:63:2155:-194.212,-18.9649,0	0/1:70:43,27:43:1540:27:968:-66.3653,0,-117.821	1/1:34:0,34:0:0:34:1197:-108.033,-10.235,0	0/1:130:72,58:72:2584:58:2020:-142.936,0,-193.675	0/1:178:98,80:98:3508:80:2803:-198.925,0,-262.347	1/1:22:0,22:0:0:22:776:-70.1622,-6.62266,0	1/1:172:1,171:1:36:171:5983:-534.988,-48.1789,0	1/1:95:0,95:0:0:95:3312:-298.298,-28.5979,0	0/1:84:41,43:41:1464:43:1454:-105.859,0,-106.77	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:13:0,13:0:0:13:441:-40.0132,-3.91339,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:337:-30.6547,-3.0103,0	1/1:25:0,25:0:0:25:822:-74.2813,-7.52575,0	0/1:133:66,67:66:2360:67:2365:-173.071,0,-172.622	0/1:86:49,36:49:1748:36:1249:-86.7629,0,-131.657	0/1:41:29,12:29:1036:12:428:-26.5166,0,-81.2117	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:93:52,41:52:1852:41:1395:-97.8436,0,-138.964	1/1:35:0,35:0:0:35:1232:-111.184,-10.5361,0	1/1:86:0,86:0:0:86:2968:-267.351,-25.8886,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:36:1,35:1:36:35:1252:-109.387,-7.23881,0	1/1:64:0,64:0:0:64:2219:-199.97,-19.2659,0	1/1:76:0,76:0:0:76:2634:-237.305,-22.8783,0	0/1:107:67,40:67:2412:40:1386:-92.8227,0,-185.126	0/1:72:34,38:34:1216:38:1341:-99.3139,0,-88.0724	0/1:143:85,58:85:3025:58:2038:-140.642,0,-229.433	1/1:102:0,102:0:0:102:3562:-320.792,-30.7051,0	1/1:7:0,7:0:0:7:233:-21.2943,-2.10721,0	1/1:151:1,150:1:36:150:5262:-470.124,-41.8573,0	1/1:35:0,35:0:0:35:1219:-110.011,-10.5361,0	1/1:27:0,27:0:0:27:929:-83.9201,-8.12781,0	1/1:73:0,73:0:0:73:2590:-233.346,-21.9752,0	1/1:28:0,28:0:0:28:976:-88.1524,-8.42884,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:59:0,59:0:0:59:2046:-184.409,-17.7608,0	1/1:91:0,91:0:0:91:3256:-293.261,-27.3937,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:112:0,112:0:0:112:3933:-354.168,-33.7154,0	0/1:127:63,63:63:2264:63:2171:-157.51,0,-165.88	0/1:36:23,13:23:824:13:430:-28.1783,0,-63.6462	1/1:82:0,82:0:0:82:2844:-256.2,-24.6845,0	1/1:119:0,119:0:0:119:4114:-370.449,-35.8226,0	1/1:88:0,88:0:0:88:3044:-274.19,-26.4906,0	1/1:39:0,39:0:0:39:1357:-122.426,-11.7402,0	1/1:48:0,48:0:0:48:1670:-150.583,-14.4494,0	0/1:54:24,30:24:864:30:1060:-79.4557,0,-61.8269	0/1:15:11,4:11:396:4:129:-7.41221,0,-31.4673	0/1:99:48,51:48:1711:51:1770:-129.777,0,-124.473	0/1:94:58,36:58:2088:36:1268:-86.1259,0,-159.893	0/1:78:43,35:43:1540:35:1221:-86.7111,0,-115.413	0/1:115:59,56:59:2112:56:1950:-141.154,0,-155.503	0/1:52:25,27:25:892:27:881:-63.9328,0,-64.9461	0/1:82:36,46:36:1292:46:1586:-118.341,0,-91.8993	1/1:19:0,19:0:0:19:668:-60.4457,-5.71957,0	1/1:66:0,66:0:0:66:2287:-206.089,-19.868,0	0/1:68:35,33:35:1256:33:1132:-81.712,0,-92.8752	0/1:135:79,56:79:2828:56:1990:-138.734,0,-214.12	0/1:48:21,27:21:756:27:968:-72.9742,0,-53.9178	0/1:59:20,39:20:711:39:1388:-107.458,0,-46.5549	0/1:51:20,31:20:716:31:1096:-83.5974,0,-49.4152	0/1:95:44,51:44:1572:51:1793:-133.053,0,-113.174	0/1:15:9,6:9:320:6:212:-14.9093,0,-24.6269	1/1:53:0,53:0:0:53:1857:-167.408,-15.9546,0	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	0/1:85:43,42:43:1540:42:1496:-109.347,0,-113.306	0/1:58:39,19:39:1396:19:680:-44.0694,0,-107.989	1/1:88:0,88:0:0:88:3085:-277.881,-26.4906,0	1/1:78:0,78:0:0:78:2772:-249.723,-23.4803,0
chr01	14837201	.	C	T	19165.1	PASS	AB=0.466773;ABP=27.1091;AC=41;AF=0.22043;AN=186;AO=1178;CIGAR=1X;DP=4902;DPB=4902;DPRA=1.4517;EPP=2552.33;EPPR=8061.37;GTI=3;LEN=1;MEANALT=1;MQM=59.9966;MQMR=59.9909;NS=93;NUMALT=1;ODDS=0.127046;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42134;QR=132951;RO=3723;RPL=1178;RPP=2561;RPPR=8087.4;RPR=0;RUN=1;SAF=1;SAP=2552.33;SAR=1177;SRF=3;SRP=8061.37;SRR=3720;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:48:37,11:37:1328:11:396:-21.5333,0,-105.373	0/0:107:107,0:107:3821:0:0:0,-32.2102,-344.086	0/0:96:96,0:96:3424:0:0:0,-28.8989,-308.375	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:20:19,1:19:676:1:36:0,-2.42232,-57.5664	0/1:62:31,31:31:1101:31:1116:-82.0878,0,-80.7345	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:27:12,15:12:417:15:528:-39.723,0,-29.7324	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:60:29,31:29:1035:31:1116:-82.6899,0,-75.4013	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.149	0/1:50:15,35:15:540:35:1260:-98.654,0,-33.885	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:60:35,25:35:1252:25:896:-62.8986,0,-94.9233	0/0:41:41,0:41:1476:0:0:0,-12.3422,-132.866	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/1:50:24,26:24:864:26:936:-69.508,0,-63.0311	0/1:31:11,20:11:396:20:720:-55.7968,0,-26.6508	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:46:25,21:25:892:21:756:-54.5198,0,-66.7523	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:176:98,78:98:3497:78:2781:-197.548,0,-261.958	0/1:78:41,37:41:1476:37:1313:-94.9894,0,-109.656	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:83:82,1:82:2944:1:21:0,-22.8855,-263.093	0/1:70:26,44:26:909:44:1580:-121.419,0,-61.0513	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:153:70,83:70:2505:83:2946:-219.314,0,-179.643	0/1:90:47,43:47:1688:43:1532:-111.08,0,-125.114	0/1:56:27,29:27:968:29:1036:-76.6962,0,-70.5797	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:85:55,30:55:1965:30:1080:-71.9257,0,-151.536	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.191	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/1:79:46,33:46:1641:33:1188:-83.4472,0,-124.195	0/1:41:24,17:24:860:17:612:-43.0712,0,-65.3796	0/1:87:39,48:39:1404:48:1724:-129.256,0,-100.47	0/0:69:69,0:69:2438:0:0:0,-20.7711,-219.672	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:112:111,0:111:3969:0:0:0,-33.4143,-357.129	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:78:78,0:78:2769:0:0:0,-23.4803,-249.451	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:21:21,0:21:733:0:0:0,-6.32163,-66.2897	0/0:84:83,1:83:2980:1:32:0,-22.0872,-265.233	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.283	0/1:61:31,30:31:1112:30:1064:-77.7088,0,-82.0285	0/1:74:45,29:45:1597:29:1044:-71.9986,0,-121.742	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/0:73:72,1:72:2565:1:36:0,-18.3769,-227.5	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/0:53:53,0:53:1869:0:0:0,-15.9546,-168.487	0/1:89:48,41:48:1708:41:1471:-105.895,0,-127.214	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:53:32,21:32:1133:21:741:-51.057,0,-86.3221	0/1:42:25,17:25:896:17:603:-41.9562,0,-68.3171	0/1:50:24,26:24:848:26:932:-69.1474,0,-61.5882	0/1:76:39,37:39:1400:37:1325:-96.6739,0,-103.421	0/1:41:30,11:30:1076:11:396:-23.6405,0,-84.8106	0/1:78:45,33:45:1585:33:1180:-83.0277,0,-119.458	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433	0/1:39:30,9:30:1061:9:320:-17.4022,0,-84.0592	0/1:107:65,42:65:2298:42:1497:-102.812,0,-174.868	0/1:71:33,38:33:1184:38:1351:-100.517,0,-85.4952	0/1:49:22,27:22:788:27:972:-73.0474,0,-56.4943	0/1:56:30,26:30:1072:26:932:-67.3412,0,-79.9348	0/1:89:45,44:45:1604:44:1573:-115.067,0,-117.858	0/1:41:24,17:24:860:17:608:-42.7098,0,-65.3796	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:71:46,25:46:1639:25:900:-59.9479,0,-126.425	0/1:58:23,35:23:809:35:1260:-96.2457,0,-55.6686	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33
chr01	14953205	.	C	G	9380.5	PASS	AB=0.5253;ABP=13.6683;AC=146;AF=0.776596;AN=188;AO=3362;CIGAR=1X;DP=4337;DPB=4337;DPRA=0;EPP=7303.5;EPPR=2109.34;GTI=19;LEN=1;MEANALT=1.04255;MQM=15.2576;MQMR=45.3825;NS=94;NUMALT=1;ODDS=0.00642583;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120161;QR=34627;RO=970;RPL=0;RPP=7303.5;RPPR=2109.34;RPR=3362;RUN=1;SAF=3362;SAP=7303.5;SAR=0;SRF=970;SRP=2109.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1265:-48.8291,-10.8371,0	0/1:48:26,22:26:932:22:792:-15.3343,0,-68.8046	1/1:118:0,118:0:0:118:4220:-161.508,-35.5215,0	1/1:107:0,107:0:0:107:3824:-143.585,-32.2102,0	1/1:35:0,35:0:0:35:1252:-47.7993,-10.5361,0	1/1:21:0,21:0:0:21:744:-28.6871,-6.32163,0	0/1:35:21,14:21:756:14:504:-8.47169,0,-56.8949	1/1:83:0,83:0:0:83:2957:-115.102,-24.9855,0	0/1:40:15,25:15:540:25:896:-23.6765,0,-36.3219	1/1:28:0,28:0:0:28:1004:-37.8613,-8.42884,0	1/1:15:0,15:0:0:15:527:-20.2399,-4.51545,0	1/1:37:0,37:0:0:37:1303:-51.9327,-11.1381,0	0/1:38:21,17:21:756:17:608:-11.6051,0,-56.148	1/1:24:0,24:0:0:24:864:-32.2982,-7.22472,0	0/1:30:12,18:12:428:18:644:-15.2714,0,-29.2934	1/1:26:0,26:0:0:26:932:-35.1673,-7.82678,0	1/1:16:0,16:0:0:16:576:-21.7017,-4.81648,0	0/1:15:10,5:10:356:5:180:-2.36924,0,-27.5217	1/1:7:0,7:0:0:7:252:-9.30598,-2.10721,0	1/1:117:0,117:0:0:117:4185:-160.952,-35.2205,0	0/1:65:30,35:30:1076:35:1241:-27.4617,0,-76.5177	0/0:78:61,17:61:2184:17:612:0,-0.881833,-170.97	1/1:68:0,68:0:0:68:2425:-91.2943,-20.47,0	0/1:39:21,18:21:740:18:648:-12.2956,0,-54.4804	1/1:44:0,44:0:0:44:1572:-60.9451,-13.2453,0	0/1:101:45,55:45:1604:55:1976:-45.1973,0,-112.161	0/1:126:53,72:53:1889:72:2580:-60.2014,0,-130.498	1/1:14:0,14:0:0:14:504:-18.9177,-4.21442,0	1/1:146:0,146:0:0:146:5228:-196.842,-43.9504,0	1/1:66:0,66:0:0:66:2364:-89.2154,-19.868,0	0/1:66:28,38:28:1008:38:1364:-33.0913,0,-69.9074	1/1:9:0,9:0:0:9:320:-12.2682,-2.70927,0	1/1:17:0,17:0:0:17:597:-22.7122,-5.11751,0	0/1:3:1,2:1:36:2:72:-2.59274,0,-2.65553	1/1:8:0,8:0:0:8:284:-10.4676,-2.40824,0	1/1:19:0,19:0:0:19:680:-25.7382,-5.71957,0	0/1:91:47,43:47:1680:43:1548:-30.1917,0,-121.636	0/1:57:17,40:17:608:40:1440:-36.8706,0,-35.8362	0/1:15:5,10:5:176:10:360:-9.10427,0,-11.5087	0/1:2:1,1:1:36:1:36:-0.894612,0,-2.95656	0/1:56:31,25:31:1112:25:892:-16.5987,0,-82.4444	1/1:15:0,15:0:0:15:536:-20.2602,-4.51545,0	1/1:103:0,103:0:0:103:3677:-139.373,-31.0061,0	1/1:23:0,23:0:0:23:816:-31.0284,-6.92369,0	1/1:19:0,19:0:0:19:684:-25.7428,-5.71957,0	1/1:76:0,76:0:0:76:2728:-103.605,-22.8783,0	1/1:46:0,46:0:0:46:1648:-61.9247,-13.8474,0	0/1:84:45,39:45:1596:39:1392:-28.6552,0,-116.712	0/1:70:33,37:33:1172:37:1320:-28.366,0,-83.3999	0/1:55:17,38:17:612:38:1364:-34.5955,0,-38.0581	1/1:71:0,71:0:0:71:2532:-98.7784,-21.3731,0	1/1:6:0,6:0:0:6:216:-8.2317,-1.80618,0	1/1:86:0,86:0:0:86:3068:-114.799,-25.8886,0	1/1:39:0,39:0:0:39:1392:-51.8634,-11.7402,0	1/1:4:0,4:0:0:4:140:-5.4422,-1.20412,0	1/1:75:0,75:0:0:75:2688:-102.387,-22.5773,0	1/1:29:0,29:0:0:29:1040:-41.1047,-8.72987,0	1/1:6:0,6:0:0:6:216:-8.2317,-1.80618,0	0/1:14:10,4:10:360:4:144:-1.32327,0,-27.996	1/1:60:0,60:0:0:60:2144:-81.1258,-18.0618,0	1/1:50:0,50:0:0:50:1784:-67.6599,-15.0515,0	1/1:3:0,3:0:0:3:108:-4.19068,-0.90309,0	1/1:103:0,103:0:0:103:3696:-137.982,-31.0061,0	0/1:108:45,63:45:1591:63:2260:-54.1149,0,-108.849	0/1:39:19,20:19:680:20:720:-16.2209,0,-49.1189	1/1:40:0,40:0:0:40:1436:-55.6341,-12.0412,0	1/1:83:2,81:2:68:81:2896:-103.564,-18.585,0	1/1:79:0,79:0:0:79:2832:-105.833,-23.7814,0	1/1:18:0,18:0:0:18:640:-24.2069,-5.41854,0	1/1:33:0,33:0:0:33:1176:-47.8023,-9.93399,0	0/1:26:14,12:14:500:12:424:-8.29751,0,-36.8094	0/1:22:9,13:9:320:13:464:-10.9434,0,-22.1383	0/1:100:50,50:50:1784:50:1784:-38.1561,0,-128.916	0/1:30:17,13:17:608:13:468:-10.5374,0,-45.428	0/1:61:25,36:25:888:36:1288:-30.0007,0,-60.939	0/1:71:22,49:22:784:49:1741:-43.8823,0,-48.518	0/1:42:19,23:19:676:23:824:-18.483,0,-47.8528	0/1:29:13,16:13:468:16:576:-12.9719,0,-33.2618	1/1:14:0,14:0:0:14:500:-18.6449,-4.21442,0	1/1:50:0,50:0:0:50:1784:-67.4819,-15.0515,0	0/1:46:25,21:25:884:21:756:-15.6622,0,-65.207	0/1:91:47,44:47:1676:44:1572:-31.6522,0,-120.444	0/1:32:21,11:21:748:11:373:-5.71161,0,-57.1419	0/1:18:7,11:7:252:11:384:-9.53459,0,-17.2668	0/1:21:12,9:12:432:9:306:-5.63844,0,-32.3156	0/1:41:22,19:22:775:19:684:-13.2208,0,-56.8381	0/1:19:14,5:14:504:5:180:-1.52839,0,-39.3862	1/1:37:0,37:0:0:37:1324:-49.711,-11.1381,0	1/1:26:0,26:0:0:26:936:-35.082,-7.82678,0	1/1:13:0,13:0:0:13:464:-17.6562,-3.91339,0	0/1:43:22,21:22:792:21:752:-15.488,0,-57.9081	0/1:28:15,13:15:540:13:464:-9.22737,0,-39.8401	1/1:46:0,44:0:0:44:1557:-57.8343,-13.2453,0	1/1:28:0,28:0:0:28:991:-37.5683,-8.42884,0
chr01	14979147	.	A	G	50870.5	PASS	AB=0.483885;ABP=13.6485;AC=42;AF=0.223404;AN=188;AO=2298;CIGAR=1X;DP=9529;DPB=9529;DPRA=1.50774;EPP=228.042;EPPR=202.126;GTI=3;LEN=1;MEANALT=1.03846;MQM=59.6849;MQMR=59.9696;NS=94;NUMALT=1;ODDS=0.153885;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81185;QR=257533;RO=7226;RPL=13;RPP=4880.78;RPPR=15331.4;RPR=2285;RUN=1;SAF=1406;SAP=252.66;SAR=892;SRF=4062;SRP=245.341;SRR=3164;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/1:105:53,52:53:1877:52:1843:-134.534,0,-137.599	0/0:236:235,1:235:8371:1:36:0,-67.4448,-749.797	0/0:120:119,1:119:4236:1:36:0,-32.5253,-377.784	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.096	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:80:43,37:43:1532:37:1311:-94.2029,0,-114.091	0/0:124:124,0:124:4444:0:0:0,-37.3277,-400.13	0/1:78:36,42:36:1260:42:1499:-111.626,0,-90.2193	0/0:87:86,1:86:3055:1:32:0,-22.9903,-271.981	0/0:160:160,0:160:5701:0:0:0,-48.1648,-513.206	0/0:205:204,0:204:7216:0:0:0,-61.4101,-649.13	0/1:181:91,90:91:3196:90:3180:-231.938,0,-233.374	0/0:210:210,0:210:7482:0:0:0,-63.2163,-673.424	0/1:166:89,77:89:3179:77:2722:-195.23,0,-236.349	0/0:174:174,0:174:6225:0:0:0,-52.3792,-560.345	0/0:189:189,0:189:6726:0:0:0,-56.8947,-605.413	0/1:139:76,63:76:2694:63:2224:-158.54,0,-200.861	0/0:99:98,0:98:3512:0:0:0,-29.5009,-315.93	0/0:127:127,0:127:4501:0:0:0,-38.2308,-405.259	0/1:123:74,49:74:2647:49:1731:-119.039,0,-201.449	0/1:54:28,26:28:1000:26:911:-66.0467,0,-74.0598	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:71:36,35:36:1296:35:1232:-89.8073,0,-95.5708	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/1:153:84,69:84:2972:69:2436:-173.347,0,-221.655	0/1:158:85,73:85:3007:73:2582:-184.952,0,-223.298	0/0:72:72,0:72:2554:0:0:0,-21.6742,-230.11	0/0:117:117,0:117:4191:0:0:0,-35.2205,-377.371	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/1:64:35,29:35:1252:29:1032:-73.922,0,-93.7192	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:380:198,182:198:7104:182:6435:-464.836,0,-525.025	0/1:46:21,25:21:752:25:896:-67.113,0,-54.1589	0/1:154:69,85:69:2444:85:2982:-222.226,0,-173.855	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:103:51,52:51:1832:52:1836:-134.509,0,-133.217	0/0:65:64,1:64:2267:1:36:0,-15.9687,-200.694	0/0:109:109,0:109:3891:0:0:0,-32.8123,-350.385	0/0:154:152,1:152:5389:1:32:0,-43.1532,-481.958	0/0:117:116,1:116:4129:1:36:0,-31.6222,-368.196	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/0:70:70,0:70:2487:0:0:0,-21.0721,-224.083	0/1:107:47,60:47:1684:60:2093:-156.407,0,-119.367	0/1:52:18,34:18:648:34:1216:-94.0728,0,-42.9983	0/1:96:44,52:44:1576:52:1860:-138.781,0,-113.233	0/0:115:115,0:115:4091:0:0:0,-34.6184,-368.378	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:107:106,1:106:3762:1:36:0,-28.6119,-335.183	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:14:5,9:5:180:9:309:-23.9263,0,-12.3376	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/0:230:229,1:229:8189:1:36:0,-65.6386,-733.424	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:82:82,0:82:2922:0:0:0,-24.6845,-263.214	0/1:114:63,51:63:2229:51:1799:-127.86,0,-166.555	0/1:79:40,39:40:1432:39:1379:-100.626,0,-105.396	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/0:74:73,0:73:2573:0:0:0,-21.9752,-231.593	0/0:129:128,1:128:4556:1:36:0,-35.2346,-406.597	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:192:117,75:117:4176:75:2670:-182.745,0,-318.22	0/1:18:11,7:11:396:7:252:-17.5965,0,-30.5642	0/1:45:22,23:22:779:23:802:-58.946,0,-56.8857	0/1:70:39,31:39:1404:31:1097:-77.9496,0,-105.587	0/1:175:76,99:76:2696:99:3507:-263.137,0,-190.203	0/1:137:65,72:65:2332:72:2507:-184.616,0,-168.898	0/1:78:53,25:53:1892:25:884:-56.398,0,-147.078	0/1:99:47,51:47:1656:51:1805:-132.867,0,-119.464	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:88:87,1:87:3112:1:36:0,-22.8924,-276.709	0/1:90:58,32:58:2076:32:1140:-75.8083,0,-160.018	0/1:136:85,51:85:3048:51:1808:-122.059,0,-233.609	0/1:163:85,78:85:3033:78:2759:-199.481,0,-224.044	0/1:132:73,59:73:2628:59:2060:-145.917,0,-197.031	0/1:181:89,92:89:3196:92:3268:-239.825,0,-233.376	0/1:303:166,137:166:5940:137:4838:-344.326,0,-443.496	0/1:53:18,35:18:640:35:1241:-95.8444,0,-41.9747	0/0:151:150,1:150:5334:1:36:0,-41.8573,-476.55	0/0:166:166,0:166:5901:0:0:0,-49.971,-531.203	0/0:124:124,0:124:4442:0:0:0,-37.3277,-399.949	0/1:189:103,86:103:3670:86:3049:-217.735,0,-273.598	0/1:135:39,96:39:1382:96:3358:-261.736,0,-84.0382	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/0:284:284,0:284:10145:0:0:0,-85.4925,-912.982
chr01	15251899	.	C	T	318240	PASS	AB=0.504158;ABP=4.27428;AC=144;AF=0.765957;AN=188;AO=11921;CIGAR=1X;DP=16128;DPB=16128;DPRA=0;EPP=25889.1;EPPR=9123.2;GTI=4;LEN=1;MEANALT=1.03191;MQM=59.9742;MQMR=59.9924;NS=94;NUMALT=1;ODDS=2.2566;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=423718;QR=148056;RO=4204;RPL=6664;RPP=363.614;RPPR=10.6983;RPR=5257;RUN=1;SAF=6664;SAP=363.614;SAR=5257;SRF=2040;SRP=10.9524;SRR=2164;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:77:0,77:0:0:77:2704:-243.567,-23.1793,0	0/1:202:97,105:97:3443:105:3692:-271.676,0,-249.277	1/1:226:0,226:0:0:226:8065:-725.868,-68.0328,0	1/1:417:2,415:2:72:415:14713:-1317.08,-118.693,0	1/1:82:0,82:0:0:82:2911:-262.224,-24.6845,0	1/1:101:0,101:0:0:101:3604:-324.567,-30.404,0	0/1:165:81,84:81:2821:84:2985:-219.212,0,-204.457	1/1:274:0,274:0:0:274:9744:-876.915,-82.4822,0	0/1:164:48,115:48:1678:115:4078:-317.781,0,-101.875	1/1:184:0,184:0:0:184:6498:-584.906,-55.3895,0	1/1:158:0,158:0:0:158:5626:-506.461,-47.5627,0	1/1:179:0,179:0:0:179:6382:-574.471,-53.8844,0	0/1:195:101,94:101:3587:94:3323:-240.587,0,-264.338	1/1:163:0,163:0:0:163:5746:-517.262,-49.0679,0	0/1:140:75,65:75:2604:65:2340:-168.715,0,-192.463	1/1:142:0,142:0:0:142:5076:-456.985,-42.7463,0	1/1:154:1,153:1:36:153:5420:-484.325,-42.7603,0	0/1:150:78,72:78:2755:72:2554:-184.956,0,-203.036	0/1:91:35,56:35:1224:56:1995:-152.43,0,-83.0672	0/1:285:125,160:125:4397:160:5697:-427.054,0,-310.111	0/1:221:103,118:103:3621:118:4216:-313.094,0,-259.569	0/1:128:78,50:78:2744:50:1769:-120.959,0,-208.668	1/1:89:0,89:0:0:89:3166:-285.165,-26.7917,0	0/1:149:82,67:82:2887:67:2387:-170.234,0,-215.213	1/1:106:0,106:0:0:106:3784:-340.758,-31.9092,0	0/1:527:266,261:266:9420:261:9268:-675.451,0,-689.129	0/1:419:208,211:208:7314:211:7507:-549.542,0,-532.188	1/1:78:0,78:0:0:78:2752:-247.919,-23.4803,0	1/1:388:0,388:0:0:388:13801:-1241.87,-116.8,0	1/1:168:0,168:0:0:168:5980:-538.307,-50.573,0	0/1:219:105,113:105:3736:113:4011:-295.196,0,-270.459	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:422:210,212:210:7377:212:7567:-554.037,0,-536.955	0/1:200:118,82:118:4195:82:2902:-201.21,0,-317.528	0/1:126:64,61:64:2240:61:2142:-155.056,0,-163.872	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:199:79,120:79:2756:120:4257:-323.403,0,-188.376	1/1:104:0,104:0:0:104:3708:-333.923,-31.3071,0	1/1:263:1,262:1:27:262:9317:-835.797,-76.4711,0	1/1:159:0,159:0:0:159:5678:-511.138,-47.8638,0	1/1:164:0,164:0:0:164:5819:-523.825,-49.3689,0	1/1:175:0,175:0:0:175:6217:-559.627,-52.6803,0	1/1:245:0,245:0:0:245:8693:-782.297,-73.7524,0	0/1:325:154,171:154:5424:171:6066:-448.211,0,-390.455	0/1:185:77,108:77:2720:108:3827:-288.937,0,-189.352	0/1:276:145,131:145:5139:131:4624:-333.027,0,-379.568	1/1:223:0,223:0:0:223:7931:-713.818,-67.1297,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:223:0,223:0:0:223:7930:-713.728,-67.1297,0	1/1:91:0,91:0:0:91:3220:-290.022,-27.3937,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:205:0,205:0:0:205:7258:-653.276,-61.7112,0	1/1:56:0,56:0:0:56:1972:-177.753,-16.8577,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:21:20,1:20:695:1:36:0,-2.72335,-59.2731	1/1:119:0,119:0:0:119:4234:-381.241,-35.8226,0	1/1:290:1,289:1:36:289:10261:-919.823,-83.7004,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:323:0,323:0:0:323:11508:-1035.6,-97.2327,0	0/1:287:156,131:156:5473:131:4683:-335.235,0,-406.303	0/1:139:75,64:75:2663:64:2280:-163.617,0,-198.073	1/1:169:0,169:0:0:169:6025:-542.345,-50.8741,0	1/1:222:1,221:1:36:221:7840:-701.948,-63.2304,0	1/1:210:1,209:1:36:209:7426:-664.792,-59.618,0	1/1:67:0,67:0:0:67:2399:-216.158,-20.169,0	1/1:141:0,141:0:0:141:4993:-449.52,-42.4452,0	0/1:179:90,89:90:3157:89:3158:-230.561,0,-230.471	0/1:25:12,13:12:419:13:464:-34.5718,0,-30.5169	0/1:179:88,91:88:3104:91:3228:-236.857,0,-225.704	0/1:133:49,84:49:1743:84:3003:-230.464,0,-117.117	0/1:215:114,101:114:4067:101:3609:-260.285,0,-301.496	0/1:301:169,132:169:6000:132:4706:-333.091,0,-449.499	0/1:145:62,83:62:2202:83:2964:-223.344,0,-154.795	0/1:197:101,96:101:3547:96:3430:-249.609,0,-260.139	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:248:0,248:0:0:248:8842:-795.768,-74.6554,0	0/1:220:95,125:95:3337:125:4454:-334.805,0,-234.321	0/1:296:132,164:132:4658:164:5809:-433.822,0,-329.788	0/1:178:92,86:92:3242:86:3076:-223.485,0,-238.421	0/1:180:104,76:104:3601:76:2701:-189.042,0,-270.115	0/1:172:83,89:83:2929:89:3180:-234.647,0,-212.068	0/1:318:160,158:160:5605:158:5608:-409.117,0,-408.855	0/1:89:34,55:34:1212:55:1967:-150.508,0,-82.5947	1/1:194:4,190:4:140:190:6760:-595.532,-45.4552,0	1/1:179:0,179:0:0:179:6394:-575.551,-53.8844,0	1/1:118:0,118:0:0:118:4186:-376.922,-35.5215,0	0/1:204:109,95:109:3775:95:3353:-240.578,0,-278.543	0/1:165:115,50:115:4031:50:1749:-108.021,0,-313.311	1/1:186:1,185:1:36:185:6564:-587.22,-52.3933,0	1/1:238:1,237:1:27:237:8442:-757.071,-68.9454,0
chr01	15354723	.	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chr01	15354745	.	C	T	86787	PASS	AB=0.500719;ABP=3.04465;AC=44;AF=0.234043;AN=188;AO=3850;CIGAR=1X;DP=14018;DPB=14018;DPRA=1.82968;EPP=88.7976;EPPR=4.44712;GTI=7;LEN=1;MEANALT=1.09615;MQM=59.6688;MQMR=59.9352;NS=94;NUMALT=1;ODDS=0.901354;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136564;QR=363116;RO=10162;RPL=2120;RPP=88.7976;RPPR=4.44712;RPR=1730;RUN=1;SAF=0;SAP=8363.18;SAR=3850;SRF=0;SRP=22069.5;SRR=10162;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:327:177,150:177:6322:150:5325:-380.891,0,-470.624	0/0:211:211,0:211:7562:0:0:0,-63.5173,-680.617	0/0:370:370,0:370:13200:0:0:0,-111.381,-1187.74	0/0:174:174,0:174:6231:0:0:0,-52.3792,-560.876	0/0:113:111,2:111:3984:2:72:0,-27.1797,-351.912	0/1:200:97,103:97:3476:103:3672:-270.469,0,-252.475	0/0:336:333,2:333:11882:2:72:0,-94.3681,-1062.4	0/1:163:80,83:80:2872:83:2941:-215.64,0,-209.649	0/0:140:139,1:139:4988:1:36:0,-38.5459,-445.413	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.897	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:71:37,34:37:1311:34:1212:-87.995,0,-96.9177	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.5	0/1:80:43,37:43:1529:37:1324:-95.375,0,-113.819	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/1:94:51,43:51:1823:43:1521:-108.869,0,-136.054	0/1:23:10,13:10:360:13:468:-35.535,0,-25.8206	0/1:455:220,235:220:7864:235:8336:-613.25,0,-570.814	0/1:313:164,149:164:5850:149:5301:-382.587,0,-432.385	0/1:163:50,113:50:1796:113:3961:-307.601,0,-112.854	0/0:199:198,0:198:7079:0:0:0,-59.6039,-636.23	0/1:236:138,98:138:4938:98:3512:-245.227,0,-373.511	0/0:114:114,0:114:4075:0:0:0,-34.3174,-366.936	0/1:508:248,260:248:8884:260:9181:-673.341,0,-646.493	0/1:301:142,159:142:5079:159:5673:-420.044,0,-366.642	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.48	0/0:470:469,1:469:16777:1:36:0,-137.886,-1505.86	0/0:174:173,1:173:6182:1:36:0,-48.786,-552.833	0/1:273:143,129:143:5120:129:4597:-331.781,0,-378.849	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:191:81,109:81:2899:109:3900:-293.624,0,-203.59	0/1:254:135,119:135:4844:119:4142:-296.391,0,-359.573	0/1:64:30,34:30:1071:34:1193:-88.404,0,-77.4357	0/1:9:6,3:6:208:3:108:-7.3659,0,-16.3451	0/1:195:92,103:92:3300:103:3626:-267.761,0,-238.518	0/0:28:28,0:28:974:0:0:0,-8.42884,-87.9682	0/0:299:299,0:299:10711:0:0:0,-90.008,-963.894	0/0:91:91,0:91:3225:0:0:0,-27.3937,-290.47	0/0:87:87,0:87:3090:0:0:0,-26.1896,-278.326	0/0:110:109,1:109:3908:1:36:0,-29.515,-348.313	0/0:229:229,0:229:8170:0:0:0,-68.9359,-735.317	0/1:342:188,153:188:6690:153:5449:-387.617,0,-499.07	0/1:94:45,49:45:1612:49:1740:-128.585,0,-117.073	0/1:309:172,136:172:6149:136:4840:-342.577,0,-460.42	0/0:189:189,0:189:6758:0:0:0,-56.8947,-608.292	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:198:198,0:198:7077:0:0:0,-59.6039,-636.99	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.658	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:194:194,0:194:6956:0:0:0,-58.3998,-626.099	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.885	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.43	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:317:317,0:317:11294:0:0:0,-95.4265,-1016.23	0/1:291:136,155:136:4876:155:5497:-407.246,0,-351.304	0/1:130:75,55:75:2678:55:1953:-136.905,0,-200.939	0/0:161:161,0:161:5771:0:0:0,-48.4658,-519.503	0/0:375:373,2:373:13320:2:72:0,-106.05,-1191.74	0/0:141:137,4:137:4894:4:144:0,-29.1316,-427.028	0/0:26:26,0:26:906:0:0:0,-7.82678,-81.8535	0/0:131:131,0:131:4708:0:0:0,-39.4349,-423.87	0/1:96:41,55:41:1468:55:1961:-147.86,0,-103.517	0/1:18:9,9:9:320:9:316:-23.3603,0,-23.7238	0/1:115:54,61:54:1928:61:2166:-160.382,0,-139.178	0/1:119:65,54:65:2332:54:1852:-131.12,0,-174.317	0/1:249:134,115:134:4788:115:4098:-294.028,0,-356.076	0/1:285:134,151:134:4790:151:5405:-400.778,0,-345.456	0/1:243:125,118:125:4412:118:4128:-298.511,0,-324.097	0/1:226:109,117:109:3908:117:4135:-304.221,0,-283.88	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:215:211,4:211:7564:4:140:0,-51.7769,-667.849	0/1:250:138,112:138:4921:112:3916:-277.296,0,-367.784	0/1:229:123,106:123:4392:106:3777:-271.17,0,-326.514	0/1:93:40,53:40:1436:53:1877:-141.178,0,-101.542	0/1:73:23,50:23:815:50:1788:-139.227,0,-51.6956	0/1:124:62,62:62:2212:62:2224:-163.088,0,-162.017	0/1:180:82,98:82:2899:98:3501:-261.018,0,-206.959	0/1:63:37,26:37:1328:26:928:-64.8375,0,-100.857	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:82:82,0:82:2922:0:0:0,-24.6845,-263.214	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/1:62:31,31:31:1097:31:1104:-81.0041,0,-80.3742	0/1:117:35,82:35:1248:82:2912:-227.086,0,-77.4044	0/0:195:195,0:195:6967:0:0:0,-58.7008,-627.093	0/0:122:122,0:122:4344:0:0:0,-36.7257,-391.135
chr01	15363040	.	C	G	13233.7	PASS	AB=0.536278;ABP=17.505;AC=42;AF=0.225806;AN=186;AO=683;CIGAR=1X;DP=2560;DPB=2560;DPRA=1.2455;EPP=899.453;EPPR=1669.81;GTI=0;LEN=1;MEANALT=1.02222;MQM=48.8082;MQMR=59.9691;NS=93;NUMALT=1;ODDS=1.68523;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24412;QR=67203;RO=1876;RPL=76;RPP=899.453;RPPR=1675.37;RPR=607;RUN=1;SAF=0;SAP=1486.13;SAR=683;SRF=1;SRP=4068.01;SRR=1875;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:18:10,8:10:360:8:279:-19.7709,0,-27.3258	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:69:68,1:68:2428:1:36:0,-17.188,-215.179	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:46:23,23:23:828:23:824:-60.3179,0,-60.9967	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4816	0/1:10:1,9:1:36:9:320:-25.8357,0,-0.587975	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:31:18,13:18:648:13:468:-32.6399,0,-49.32	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:30:20,10:20:720:10:360:-23.5573,0,-56.0979	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:19:8,11:8:288:11:392:-29.1596,0,-20.5478	0/1:7:5,2:5:180:2:72:-4.65416,0,-14.4449	0/1:34:14,20:14:500:20:716:-54.2443,0,-35.1012	0/1:59:24,35:24:864:35:1256:-94.504,0,-60.3218	0/1:10:2,8:2:72:8:288:-23.1335,0,-3.82642	0/0:17:16,1:16:572:1:36:0,-1.53446,-48.2304	0/1:4:2,2:2:72:2:72:-5.609,0,-5.6326	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:43:21,22:21:756:22:784:-57.6252,0,-55.4229	0/1:48:17,31:17:612:31:1108:-84.8742,0,-40.964	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:26:16,10:16:576:10:356:-24.4436,0,-44.3482	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:70:35,35:35:1260:35:1243:-90.7859,0,-92.6334	0/1:21:7,14:7:252:14:504:-38.7415,0,-16.7073	0/1:21:9,12:9:324:12:424:-31.4365,0,-23.1842	0/1:4:3,1:3:108:1:36:-2.36931,0,-8.87105	0/1:27:19,8:19:684:8:288:-17.6596,0,-53.7625	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:26:15,11:15:532:11:392:-27.3582,0,-40.1573	0/1:12:4,8:4:144:8:288:-22.5124,0,-9.70126	0/1:37:13,24:13:468:24:864:-66.5927,0,-31.3215	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.6947	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.537	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:7:2,5:2:72:5:180:-14.3658,0,-4.72951	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:147:147,0:147:5265:0:0:0,-44.2514,-473.984	0/1:45:23,22:23:828:22:775:-56.2086,0,-61.2978	0/1:18:7,11:7:252:11:396:-30.3158,0,-17.6104	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:25:24,1:24:864:1:36:0,-3.97723,-74.5341	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.877	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:15:7,8:7:252:8:288:-21.6859,0,-18.5135	0/1:24:9,15:9:324:15:536:-41.1291,0,-22.2811	0/1:27:4,23:4:144:23:824:-65.1603,0,-5.18581	0/1:49:27,22:27:949:22:792:-56.1612,0,-70.9723	0/1:38:14,24:14:504:24:860:-65.7604,0,-34.259	0/1:86:47,39:47:1672:39:1389:-98.8385,0,-124.879	0/1:18:9,9:9:324:9:320:-23.4709,0,-24.0873	0/1:47:10,37:10:356:37:1328:-104.03,0,-18.2328	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4168	0/1:37:19,18:19:680:18:640:-46.2019,0,-50.3911	0/1:51:20,31:20:720:31:1105:-83.5287,0,-49.7762	0/1:29:15,13:15:540:13:468:-33.5004,0,-40.1493	0/1:23:9,14:9:324:14:489:-37.1952,0,-22.5822	0/1:13:9,4:9:324:4:144:-9.34389,0,-25.5925	0/1:52:29,23:29:1040:23:824:-58.5341,0,-78.2608	0/1:21:9,12:9:324:12:432:-32.4747,0,-23.1842	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0822	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:43:22,21:22:792:21:748:-54.1836,0,-58.6532	0/1:22:10,12:10:360:12:432:-32.2174,0,-26.1216	0/0:87:87,0:87:3086:0:0:0,-26.1896,-277.966	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061
chr01	15399944	.	A	T	171092	PASS	AB=0.596183;ABP=377.702;AC=145;AF=0.771277;AN=188;AO=8087;CIGAR=1X;DP=9981;DPB=9981;DPRA=0;EPP=17563.7;EPPR=4111.44;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9473;MQMR=59.8959;NS=94;NUMALT=1;ODDS=2.87589;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287785;QR=67492;RO=1892;RPL=8087;RPP=17563.7;RPPR=4111.44;RPR=0;RUN=1;SAF=8087;SAP=17563.7;SAR=0;SRF=1892;SRP=4111.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:63:0,63:0:0:63:2241:-201.952,-18.9649,0	0/1:50:17,33:17:608:33:1180:-91.4565,0,-40.0005	1/1:227:0,226:0:0:226:8004:-720.065,-68.0328,0	1/1:347:0,347:0:0:347:12377:-1113.76,-104.457,0	1/1:86:0,86:0:0:86:3075:-276.978,-25.8886,0	1/1:60:0,60:0:0:60:2122:-191.227,-18.0618,0	0/1:78:42,36:42:1500:36:1273:-91.3457,0,-111.811	1/1:184:0,184:0:0:184:6550:-589.571,-55.3895,0	0/1:97:37,60:37:1323:60:2115:-161.417,0,-90.1683	1/1:119:0,118:0:0:118:4182:-376.203,-35.5215,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:95:0,95:0:0:95:3353:-301.985,-28.5979,0	0/1:70:35,35:35:1252:35:1252:-91.913,0,-91.892	1/1:45:0,45:0:0:45:1590:-143.386,-13.5464,0	0/1:68:34,34:34:1224:34:1218:-89.4564,0,-89.997	1/1:62:0,62:0:0:62:2198:-198.085,-18.6639,0	1/1:31:0,31:0:0:31:1103:-99.5794,-9.33193,0	0/1:30:12,18:12:428:18:644:-49.2597,0,-29.8279	0/1:18:4,14:4:140:14:500:-39.9176,0,-7.52604	0/1:224:85,139:85:3032:139:4964:-379.477,0,-205.679	0/1:166:85,81:85:3035:81:2867:-208.295,0,-223.382	0/1:230:112,118:112:4005:118:4176:-306.778,0,-291.383	1/1:191:2,189:2:72:189:6723:-598.305,-50.66,0	0/1:74:24,50:24:851:50:1784:-138.562,0,-54.6319	1/1:86:0,86:0:0:86:3067:-276.254,-25.8886,0	0/1:250:98,152:98:3476:152:5447:-415.095,0,-237.791	0/1:132:40,92:40:1428:92:3283:-255.954,0,-89.0807	1/1:38:0,38:0:0:38:1347:-121.529,-11.4391,0	1/1:351:1,350:1:36:350:12469:-1118.45,-102.063,0	1/1:186:0,186:0:0:186:6616:-595.521,-55.9916,0	0/1:163:66,97:66:2352:97:3409:-257.952,0,-162.871	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:10:0,10:0:0:10:345:-31.376,-3.0103,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:193:103,90:103:3684:90:3206:-230.664,0,-273.662	0/1:182:58,124:58:2050:124:4387:-340.218,0,-129.951	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:153:56,97:56:2000:97:3467:-266.184,0,-134.216	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:241:0,241:0:0:241:8547:-769.231,-72.5482,0	1/1:59:0,59:0:0:59:2097:-188.997,-17.7608,0	1/1:57:0,57:0:0:57:2034:-183.328,-17.1587,0	1/1:126:0,126:0:0:126:4475:-402.916,-37.9298,0	1/1:188:0,188:0:0:188:6660:-599.478,-56.5936,0	0/1:201:68,133:68:2421:133:4698:-362.475,0,-157.638	0/1:130:33,97:33:1180:97:3444:-271.036,0,-67.3741	0/1:114:43,71:43:1544:71:2526:-193.273,0,-104.936	1/1:198:0,198:0:0:198:7081:-637.349,-59.6039,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:194:0,194:0:0:194:6921:-622.952,-58.3998,0	1/1:87:0,87:0:0:87:3099:-279.138,-26.1896,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:163:0,163:0:0:163:5826:-524.448,-49.0679,0	1/1:56:0,56:0:0:56:1985:-178.923,-16.8577,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	1/1:99:0,99:0:0:99:3511:-316.199,-29.802,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:267:0,267:0:0:267:9504:-855.317,-80.375,0	0/1:198:65,133:65:2306:133:4755:-368.374,0,-148.178	0/1:62:29,33:29:1040:33:1181:-87.9339,0,-75.2482	1/1:115:0,115:0:0:115:4085:-367.807,-34.6185,0	1/1:253:3,250:3:108:250:8898:-790.73,-66.0854,0	1/1:174:1,173:1:36:173:6199:-554.407,-48.7809,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:57:0,57:0:0:57:2016:-181.703,-17.1587,0	0/1:31:8,23:8:288:23:820:-64.7906,0,-16.798	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/1:92:34,58:34:1198:58:2057:-157.705,0,-80.4186	0/1:84:34,50:34:1212:50:1752:-132.673,0,-84.0983	0/1:158:43,115:43:1548:115:4105:-322.071,0,-92.0503	0/1:226:98,128:98:3500:128:4578:-344.149,0,-247.176	0/1:118:37,81:37:1320:81:2893:-225.075,0,-83.5804	0/1:85:35,50:35:1235:50:1777:-134.624,0,-85.8659	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:147:2,145:2:72:145:5177:-458.775,-37.4147,0	0/1:178:62,116:62:2212:116:4140:-319.199,0,-145.762	0/1:304:120,184:120:4280:184:6564:-499.326,0,-293.862	0/1:56:26,30:26:936:30:1067:-79.4826,0,-67.7018	0/1:74:36,38:36:1283:38:1349:-99.4329,0,-93.468	0/1:41:22,19:22:775:19:650:-46.4761,0,-57.729	0/1:114:55,59:55:1976:59:2105:-155.4,0,-143.797	0/1:26:8,18:8:284:18:644:-50.4638,0,-18.075	1/1:69:0,69:0:0:69:2447:-220.485,-20.7711,0	1/1:84:0,84:0:0:84:2980:-268.431,-25.2865,0	1/1:22:0,22:0:0:22:768:-69.4385,-6.62266,0	0/1:72:41,31:41:1459:31:1103:-77.9056,0,-109.931	0/1:65:45,20:45:1599:20:708:-44.4786,0,-124.633	1/1:195:0,195:0:0:195:6975:-627.815,-58.7009,0	1/1:83:0,83:0:0:83:2970:-267.451,-24.9855,0
chr01	15418220	.	ATCTGT	GTCTGC,ATCTGC	122631	PASS	AB=0.451988,0.541869;ABP=64.9383,50.1052;AC=143,43;AF=0.768817,0.231183;AN=186;AO=4086,1680;CIGAR=1X4M1X,5M1X;DP=5801;DPB=5800.83;DPRA=0,1.45098;EPP=8814.95,3625.07;EPPR=0;GTI=5;LEN=6,1;MEANALT=1.80645,2.45652;MQM=59.9454,60;MQMR=0;NS=93;NUMALT=2;ODDS=0.415368;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.333333;PQA=10.6667,10.6667;PQR=0;PRO=0;QA=144740,59875;QR=0;RO=0;RPL=7,3;RPP=8814.95,3625.07;RPPR=0;RPR=4079,1677;RUN=1,1;SAF=4086,1680;SAP=8875.65,3651.08;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:57:0,24,32:0:0:24,32:847,1143:-162.206,-93.2634,-86.0387,-69.0132,0,-59.3802	1/1:111:0,111,0:0:0:111,0:3951,0:-355.782,-33.4143,0,-355.782,-33.4143,-355.782	1/1:181:0,181,0:0:0:181,0:6389,0:-575.075,-54.4864,0,-575.075,-54.4864,-575.075	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:74:0,41,33:0:0:41,33:1452,1184:-215.209,-96.9343,-84.5921,-118.631,0,-108.697	1/1:66:0,66,0:0:0:66,0:2321,0:-209.147,-19.868,0,-209.147,-19.868,-209.147	1/2:63:0,19,44:0:0:19,44:680,1580:-184.698,-129.246,-123.527,-55.8096,0,-42.5643	1/1:80:0,78,0:0:0:78,0:2773,0:-249.543,-23.4803,0,-249.543,-23.4803,-249.543	1/1:21:0,21,0:0:0:21,0:738,0:-66.7414,-6.32163,0,-66.7414,-6.32163,-66.7414	1/1:66:0,66,0:0:0:66,0:2340,0:-210.858,-19.868,0,-210.858,-19.868,-210.858	1/2:43:0,19,24:0:0:19,24:665,849:-123.605,-69.5031,-63.7835,-54.4532,0,-47.2285	1/1:34:0,34,0:0:0:34,0:1201,0:-108.391,-10.235,0,-108.391,-10.235,-108.391	1/2:45:0,10,35:0:0:10,35:352,1260:-131.824,-103.169,-100.159,-29.0079,0,-18.4718	1/1:43:0,43,0:0:0:43,0:1503,0:-135.56,-12.9443,0,-135.56,-12.9443,-135.56	1/1:10:0,10,0:0:0:10,0:351,0:-31.9267,-3.0103,0,-31.9267,-3.0103,-31.9267	1/2:12:0,6,6:0:0:6,6:212,216:-35.2464,-17.9843,-16.1782,-17.6186,0,-15.8124	1/2:17:0,8,9:0:0:8,9:280,320:-49.2117,-26.4331,-24.0248,-23.1311,0,-20.4218	1/2:114:0,54,60:0:0:54,60:1921,2126:-330.099,-173.546,-157.29,-156.909,0,-138.847	1/2:96:0,40,54:0:0:40,54:1402,1901:-268.896,-154.812,-142.771,-114.137,0,-97.8809	1/2:63:0,23,40:0:0:23,40:797,1395:-178.525,-113.751,-106.827,-65.0717,0,-53.0305	1/1:61:0,61,0:0:0:61,0:2140,0:-192.863,-18.3628,0,-192.863,-18.3628,-192.863	1/2:53:0,16,37:0:0:16,37:568,1315:-153.793,-107.513,-102.696,-46.6354,0,-35.4973	1/1:42:0,42,0:0:0:42,0:1468,0:-132.412,-12.6433,0,-132.412,-12.6433,-132.412	1/2:178:0,91,85:0:0:91,85:3207,3052:-510.122,-249.02,-221.626,-261.156,0,-235.569	1/2:144:0,52,92:0:0:52,92:1844,3279:-417.866,-267.634,-251.981,-150.587,0,-122.892	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:133:0,133,0:0:0:133,0:4717,0:-424.69,-40.037,0,-424.69,-40.037,-424.69	1/1:90:0,89,0:0:0:89,0:3173,0:-285.428,-26.7917,0,-285.428,-26.7917,-285.428	1/2:76:0,42,31:0:0:42,31:1495,1108:-212.196,-90.3516,-77.7083,-121.853,0,-112.521	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:10:0,9,0:0:0:9,0:320,0:-28.783,-2.70927,0,-28.783,-2.70927,-28.783	1/2:10:0,1,9:0:0:1,9:36,324:-29.734,-26.7966,-26.4956,-3.29724,0,-0.587975	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:144:0,69,75:0:0:69,75:2447,2669:-417.236,-217.877,-197.106,-199.714,0,-177.137	1/2:73:0,31,42:0:0:31,42:1100,1500:-212.274,-122.651,-113.319,-89.9784,0,-77.3351	1/2:29:0,11,18:0:0:11,18:392,635:-84.0123,-52.0584,-48.7471,-32.3087,0,-26.8902	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:83:0,45,38:0:0:45,38:1580,1350:-238.948,-110.36,-96.8133,-128.941,0,-117.502	1/1:22:0,22,0:0:0:22,0:784,0:-70.8806,-6.62266,0,-70.8806,-6.62266,-70.8806	1/1:69:0,68,0:0:0:68,0:2428,0:-218.446,-20.47,0,-218.446,-20.47,-218.446	1/1:17:0,17,0:0:0:17,0:589,0:-53.3333,-5.11751,0,-53.3333,-5.11751,-53.3333	1/1:28:0,28,0:0:0:28,0:977,0:-88.2405,-8.42884,0,-88.2405,-8.42884,-88.2405	1/1:72:0,72,0:0:0:72,0:2571,0:-231.639,-21.6742,0,-231.639,-21.6742,-231.639	1/1:33:0,33,0:0:0:33,0:1180,0:-106.508,-9.93399,0,-106.508,-9.93399,-106.508	1/2:133:0,68,64:0:0:68,64:2418,2296:-384.322,-187.275,-166.805,-197.044,0,-177.778	1/2:73:0,30,43:0:0:30,43:1061,1522:-210.742,-124.327,-115.296,-86.7685,0,-73.8242	1/2:93:0,44,49:0:0:44,49:1560,1747:-269.854,-142.763,-129.518,-127.446,0,-112.696	1/1:105:0,105,0:0:0:105,0:3727,0:-335.633,-31.6082,0,-335.633,-31.6082,-335.633	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:75:0,69,0:0:0:69,0:2445,0:-219.771,-20.7711,0,-219.771,-20.7711,-219.771	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:128:0,128,0:0:0:128,0:4488,0:-404.092,-38.5318,0,-404.092,-38.5318,-404.092	1/1:14:0,14,0:0:0:14,0:491,0:-44.5211,-4.21442,0,-44.5211,-4.21442,-44.5211	1/1:3:0,3,0:0:0:3,0:93,0: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chr01	15418252	.	A	G	87670.6	PASS	AB=0.456999;ABP=54.1796;AC=145;AF=0.771277;AN=188;AO=4294;CIGAR=1X;DP=6031;DPB=6031;DPRA=0;EPP=9327.31;EPPR=3768.34;GTI=5;LEN=1;MEANALT=1.03191;MQM=59.9311;MQMR=59.9873;NS=94;NUMALT=1;ODDS=0.49183;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151928;QR=61458;RO=1734;RPL=4294;RPP=9327.31;RPPR=3768.34;RPR=0;RUN=1;SAF=4294;SAP=9327.31;SAR=0;SRF=1734;SRP=3768.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:420:-38.134,-3.61236,0	0/1:56:33,23:33:1176:23:828:-57.9506,0,-89.2901	1/1:121:0,121:0:0:121:4295:-386.727,-36.4246,0	1/1:181:0,180:0:0:180:6350:-571.272,-54.1854,0	1/1:30:0,30:0:0:30:1076:-97.1525,-9.0309,0	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	0/1:75:34,41:34:1207:41:1463:-109.389,0,-86.358	1/1:67:0,66:0:0:66:2338:-210.317,-19.868,0	0/1:68:45,23:45:1594:23:820:-53.6525,0,-123.278	1/1:85:0,85:0:0:85:3019:-271.925,-25.5876,0	1/1:22:0,22:0:0:22:766:-69.2585,-6.62266,0	1/1:66:0,66:0:0:66:2340:-210.858,-19.868,0	0/1:42:23,19:23:804:19:668:-47.8024,0,-60.0361	1/1:35:0,35:0:0:35:1207:-108.927,-10.5361,0	0/1:45:35,10:35:1218:10:339:-17.2912,0,-96.3755	1/1:43:0,43:0:0:43:1511:-136.282,-12.9443,0	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	0/1:12:6,6:6:194:6:212:-15.8124,0,-14.1652	0/1:19:10,9:10:348:9:320:-23.4228,0,-25.9356	0/1:121:63,58:63:2244:58:2052:-148.524,0,-165.799	0/1:100:57,43:57:2036:43:1486:-103.926,0,-153.409	0/1:86:57,29:57:2039:29:1020:-66.2236,0,-157.893	1/1:68:0,68:0:0:68:2417:-217.781,-20.47,0	0/1:52:36,16:36:1252:16:555:-34.6225,0,-97.3257	1/1:44:0,44:0:0:44:1563:-140.961,-13.2453,0	0/1:181:85,96:85:3010:96:3425:-253.976,0,-216.646	0/1:145:93,52:93:3315:52:1819:-120.339,0,-254.92	1/1:24:0,24:0:0:24:833:-75.2847,-7.22472,0	1/1:133:0,133:0:0:133:4736:-426.402,-40.037,0	1/1:95:0,95:0:0:95:3354:-301.911,-28.5979,0	0/1:76:29,47:29:1023:47:1662:-126.988,0,-69.3736	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:145:78,67:78:2757:67:2379:-170.719,0,-204.723	0/1:84:44,40:44:1564:40:1428:-103.531,0,-115.765	0/1:30:18,12:18:636:12:421:-29.1931,0,-48.5371	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:84:38,46:38:1368:46:1635:-122.151,0,-98.1343	1/1:21:0,21:0:0:21:733:-66.2897,-6.32163,0	1/1:92:0,92:0:0:92:3284:-295.78,-27.6948,0	1/1:18:0,18:0:0:18:635:-57.4778,-5.41854,0	1/1:30:0,30:0:0:30:1036:-93.547,-9.0309,0	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:136:67,69:67:2391:69:2472:-181.794,0,-174.507	0/1:73:44,29:44:1568:29:1028:-70.8578,0,-119.436	0/1:91:48,43:48:1711:43:1519:-109.609,0,-126.881	1/1:107:0,107:0:0:107:3765:-339.051,-32.2102,0	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	1/1:78:1,77:1:36:77:2752:-243.135,-19.8821,0	1/1:27:0,27:0:0:27:946:-85.4529,-8.12781,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:128:0,128:0:0:128:4498:-404.994,-38.5318,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:5,1:5:172:1:36:-1.79209,0,-14.0118	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:84:0,84:0:0:84:2943:-265.105,-25.2865,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:181:1,180:1:36:180:6389:-571.503,-50.8882,0	0/1:129:74,55:74:2629:55:1939:-135.948,0,-198.024	0/1:39:30,9:30:1080:9:307:-16.2201,0,-85.7731	1/1:44:0,44:0:0:44:1558:-140.512,-13.2453,0	1/1:144:0,144:0:0:144:5131:-461.898,-43.3483,0	1/1:106:1,105:1:36:105:3724:-331.75,-28.3109,0	1/1:28:1,27:1:36:27:947:-81.9455,-4.83057,0	1/1:48:0,48:0:0:48:1666:-150.224,-14.4494,0	0/1:46:24,22:24:864:22:775:-56.2238,0,-64.2352	0/1:15:6,9:6:208:9:311:-23.8075,0,-14.5436	0/1:150:83,67:83:2952:67:2373:-168.603,0,-220.761	0/1:67:32,35:32:1131:35:1248:-92.1379,0,-81.9287	0/1:82:46,36:46:1616:36:1275:-90.3669,0,-121.045	0/1:170:85,85:85:3019:85:2999:-218.964,0,-220.767	0/1:60:30,30:30:1072:30:1053:-77.0165,0,-78.7307	0/1:106:48,58:48:1690:58:2068:-154.482,0,-120.476	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:75:0,75:0:0:75:2660:-239.645,-22.5773,0	0/1:91:53,38:53:1904:38:1333:-92.8741,0,-144.244	0/1:154:74,80:74:2593:80:2833:-208.836,0,-187.261	0/1:50:35,15:35:1240:15:531:-33.0681,0,-96.853	0/1:30:21,9:21:727:9:316:-19.748,0,-56.7186	0/1:27:16,11:16:568:11:374:-25.8586,0,-43.3241	0/1:89:42,47:42:1442:47:1645:-121.541,0,-103.278	0/1:19:9,10:9:320:10:356:-26.6617,0,-23.4228	1/1:51:0,50:0:0:50:1774:-159.582,-15.0515,0	1/1:40:0,40:0:0:40:1412:-127.377,-12.0412,0	1/1:18:0,18:0:0:18:632:-57.2068,-5.41854,0	0/1:70:32,38:32:1132:38:1356:-101.267,0,-81.1165	0/1:52:32,20:32:1140:20:720:-49.4752,0,-87.2556	1/1:175:0,175:0:0:175:6210:-558.998,-52.6803,0	1/1:61:0,61:0:0:61:2128:-191.787,-18.3628,0
chr01	15706712	.	C	T	36488.1	PASS	AB=0.479437;ABP=19.4424;AC=41;AF=0.22043;AN=186;AO=2154;CIGAR=1X;DP=8654;DPB=8654;DPRA=1.3366;EPP=4516.79;EPPR=13626.4;GTI=1;LEN=1;MEANALT=1.11111;MQM=59.8435;MQMR=59.982;NS=93;NUMALT=1;ODDS=1.43199;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76973;QR=232040;RO=6488;RPL=2135;RPP=4516.79;RPPR=13626.4;RPR=19;RUN=1;SAF=0;SAP=4680.36;SAR=2154;SRF=0;SRP=14091.5;SRR=6488;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:135:76,59:76:2728:59:2081:-146.917,0,-205.124	0/0:148:148,0:148:5297:0:0:0,-44.5524,-476.863	0/0:283:283,0:283:10136:0:0:0,-85.1915,-912.171	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:112:56,56:56:2016:56:2012:-147.636,0,-147.998	0/0:175:175,0:175:6228:0:0:0,-52.6802,-560.618	0/1:37:20,16:20:712:16:576:-40.9699,0,-53.2099	0/0:132:132,0:132:4740:0:0:0,-39.736,-426.757	0/0:51:50,1:50:1792:1:36:0,-11.7543,-157.964	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:81:54,27:54:1940:27:972:-63.4093,0,-150.493	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:57:27,30:27:964:30:1080:-80.3545,0,-69.7735	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.96	0/1:43:20,23:20:712:23:824:-61.5381,0,-51.4624	0/1:26:13,13:13:464:13:464:-34.2707,0,-34.2707	0/1:181:102,79:102:3638:79:2821:-199.64,0,-273.138	0/1:107:49,58:49:1745:58:2061:-153.547,0,-125.121	0/1:70:17,53:17:612:53:1888:-149.124,0,-34.3413	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:81:75,6:75:2684:6:203:0,-5.78694,-223.205	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:269:142,126:142:5073:126:4496:-323.727,0,-375.678	0/1:204:113,91:113:4032:91:3268:-232.929,0,-301.659	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:263:261,0:261:9312:0:0:0,-78.5688,-837.688	0/0:189:189,0:189:6734:0:0:0,-56.8947,-606.065	0/1:84:38,46:38:1342:46:1648:-123.322,0,-95.7921	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:165:80,85:80:2868:85:3052:-225.166,0,-208.687	0/1:183:105,78:105:3756:78:2788:-196.065,0,-283.152	0/1:46:24,22:24:860:22:788:-57.3965,0,-63.8745	.:.:.:.:.:.:.:.	0/1:158:81,76:81:2912:76:2705:-196.069,0,-214.693	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:53:53,0:53:1899:0:0:0,-15.9546,-171.187	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:68:68,0:68:2420:0:0:0,-20.47,-218.054	0/1:257:130,127:130:4646:127:4548:-332.091,0,-340.937	0/1:134:59,75:59:2112:75:2688:-201.827,0,-150.011	0/1:368:188,180:188:6743:180:6441:-468.941,0,-496.163	0/0:138:138,0:138:4917:0:0:0,-41.5421,-442.679	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:102:101,0:101:3636:0:0:0,-30.404,-327.083	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:114:114,0:114:4088:0:0:0,-34.3174,-368.104	0/0:45:44,0:44:1580:0:0:0,-13.2453,-142.132	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:14:8,6:8:279:6:212:-15.2104,0,-21.2331	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/0:88:88,0:88:3109:0:0:0,-26.4906,-280.036	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:360:359,0:359:12805:0:0:0,-108.07,-1151.91	0/1:174:109,65:109:3889:65:2340:-158.429,0,-297.821	0/1:91:48,43:48:1724:43:1540:-111.128,0,-128.052	0/0:146:145,0:145:5178:0:0:0,-43.6493,-465.799	0/0:99:97,1:97:3456:1:21:0,-27.6859,-309.076	0/0:108:107,1:107:3831:1:36:0,-28.913,-341.381	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:103:102,0:102:3660:0:0:0,-30.7051,-329.243	0/1:62:24,37:24:864:37:1332:-101.46,0,-59.3599	0/1:38:19,19:19:684:19:676:-49.7289,0,-50.4512	0/1:70:40,30:40:1432:30:1064:-74.9944,0,-108.105	0/1:66:31,35:31:1100:35:1237:-91.6545,0,-79.4423	0/1:70:33,37:33:1184:37:1324:-98.357,0,-85.7953	0/1:174:96,78:96:3440:78:2796:-199.499,0,-257.425	0/1:51:29,22:29:1044:22:788:-55.8914,0,-78.9223	0/1:105:56,49:56:2001:49:1748:-125.567,0,-148.754	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/1:142:75,67:75:2692:67:2381:-171.798,0,-199.778	0/1:160:93,67:93:3336:67:2389:-167.101,0,-252.292	0/1:105:55,50:55:1967:50:1792:-129.952,0,-145.696	0/1:65:33,32:33:1180:32:1152:-84.4209,0,-86.9411	0/1:94:48,46:48:1712:46:1640:-119.592,0,-126.069	0/1:133:71,62:71:2548:62:2197:-157.957,0,-189.533	0/1:27:12,15:12:428:15:536:-40.447,0,-30.731	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:56:31,25:31:1108:25:900:-64.4633,0,-83.1733	0/1:53:14,39:14:500:39:1396:-109.985,0,-29.3816	0/0:222:222,0:222:7923:0:0:0,-66.8287,-713.066	0/0:87:87,0:87:3115:0:0:0,-26.1896,-280.576
chr01	15740403	.	CTGAA	CTGAG,GTGAG	133463	PASS	AB=0.495801,0.4986;ABP=3.50268,3.06501;AC=145,41;AF=0.77957,0.22043;AN=186;AO=4643,1618;CIGAR=4M1X,1X3M1X;DP=6299;DPB=6299;DPRA=0,1.39151;EPP=10067.8,3516.45;EPPR=5.18177;GTI=2;LEN=1,5;MEANALT=1.84946,2.44681;MQM=59.9836,59.9122;MQMR=60;NS=93;NUMALT=2;ODDS=0.0579656;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165726,56975;QR=36;RO=1;RPL=2,0;RPP=10067.8,3516.45;RPPR=5.18177;RPR=4641,1618;RUN=1,1;SAF=4643,1618;SAP=10085.2,3516.45;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37,0:0:0:37,0:1292,0:-116.578,-11.1381,0,-116.578,-11.1381,-116.578	1/2:144:0,78,66:0:0:78,66:2755,2305:-412.192,-187.835,-164.355,-224.708,0,-204.84	1/1:170:0,167,0:0:0:167,0:5965,0:-536.624,-50.272,0,-536.624,-50.272,-536.624	1/1:85:0,84,1:0:0:84,1:3020,36:-271.67,-25.2865,0,-268.733,-21.9893,-268.432	1/1:44:0,44,0:0:0:44,0:1563,0:-140.961,-13.2453,0,-140.961,-13.2453,-140.961	1/1:67:0,67,0:0:0:67,0:2400,0:-216.252,-20.169,0,-216.252,-20.169,-216.252	1/2:95:0,50,45:0:0:50,45:1788,1591:-275.729,-129.933,-114.882,-146.151,0,-132.605	1/1:87:0,87,0:0:0:87,0:3124,0:-281.386,-26.1896,0,-281.386,-26.1896,-281.386	1/2:101:0,53,48:0:0:53,48:1859,1687:-288.944,-137.665,-121.711,-151.629,0,-137.18	1/1:69:0,69,0:0:0:69,0:2472,0:-222.734,-20.7711,0,-222.734,-20.7711,-222.734	1/1:46:0,46,0:0:0:46,0:1656,0:-149.328,-13.8474,0,-149.328,-13.8474,-149.328	1/1:62:0,61,0:0:0:61,0:2192,0:-197.274,-18.3628,0,-197.274,-18.3628,-197.274	1/2:68:0,18,50:0:0:18,50:648,1772:-197.586,-144.711,-139.293,-53.2333,0,-38.1818	1/1:59:0,58,0:0:0:58,0:2063,0:-185.689,-17.4597,0,-185.689,-17.4597,-185.689	1/2:39:0,16,23:0:0:16,23:576,810:-113.298,-66.296,-61.4796,-47.3585,0,-40.4348	1/1:62:0,62,0:0:0:62,0:2220,0:-200.064,-18.6639,0,-200.064,-18.6639,-200.064	1/1:58:0,58,0:0:0:58,0:2076,0:-187.111,-17.4597,0,-187.111,-17.4597,-187.111	1/2:59:0,27,31:0:0:27,31:972,1104:-169.291,-89.9794,-81.8516,-79.3103,0,-69.9783	1/2:59:0,25,34:0:0:25,34:900,1212:-172.581,-99.144,-91.6183,-73.7953,0,-63.5602	1/2:164:0,99,62:0:0:99,62:3518,2180:-464.154,-177.479,-147.677,-286.706,0,-268.042	1/2:102:0,43,59:0:0:43,59:1544,2065:-294.276,-168.323,-155.378,-126.309,0,-108.548	1/2:37:0,8,29:0:0:8,29:273,1039:-107.242,-85.0948,-82.6866,-22.4919,0,-13.7621	1/1:67:0,67,0:0:0:67,0:2395,0:-215.802,-20.169,0,-215.802,-20.169,-215.802	1/1:99:0,91,8:0:0:91,8:3260,277:-293.273,-27.3937,0,-270.763,-4.53606,-268.355	1/1:41:0,41,0:0:0:41,0:1468,0:-132.416,-12.3422,0,-132.416,-12.3422,-132.416	1/2:130:0,70,60:0:0:70,60:2490,2107:-374.764,-171.837,-150.765,-203.28,0,-185.218	1/2:109:0,51,57:0:0:51,57:1824,2014:-312.758,-164.025,-148.673,-148.739,0,-131.58	1/1:59:0,59,0:0:0:59,0:2120,0:-191.068,-17.7608,0,-191.068,-17.7608,-191.068	1/1:213:0,212,0:0:0:212,0:7524,0:-676.352,-63.8184,0,-676.352,-63.8184,-676.352	1/1:74:0,74,0:0:0:74,0:2649,0:-238.654,-22.2762,0,-238.654,-22.2762,-238.654	1/2:90:0,55,35:0:0:55,35:1953,1246:-261.04,-101.908,-85.3517,-159.487,0,-148.951	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:7:0,6,0:0:0:6,0:216,0:-19.4307,-1.80618,0,-19.4307,-1.80618,-19.4307	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:9:0,9,0:0:0:9,0:316,0:-28.7789,-2.70927,0,-28.7789,-2.70927,-28.7789	1/2:161:0,86,74:0:0:86,74:3059,2604:-461.267,-211.972,-186.084,-249.289,0,-227.013	1/2:75:0,46,28:0:0:46,28:1648,999:-215.92,-81.5143,-67.6669,-134.48,0,-126.051	1/2:54:0,28,25:0:0:28,25:1000,870:-152.264,-70.7304,-62.3015,-81.5268,0,-74.0011	.:.:.:.:.:.:.:.	1/2:112:0,58,54:0:0:58,54:2061,1884:-321.521,-153.573,-136.114,-168.3,0,-152.044	1/1:41:0,41,0:0:0:41,0:1464,0:-132.056,-12.3422,0,-132.056,-12.3422,-132.056	1/1:51:0,51,0:0:0:51,0:1832,0:-165.161,-15.3525,0,-165.161,-15.3525,-165.161	1/1:66:0,66,0:0:0:66,0:2368,0:-213.378,-19.868,0,-213.378,-19.868,-213.378	1/1:39:0,39,0:0:0:39,0:1400,0:-126.299,-11.7402,0,-126.299,-11.7402,-126.299	1/1:47:0,47,0:0:0:47,0:1672,0:-150.767,-14.1484,0,-150.767,-14.1484,-150.767	1/1:58:0,58,0:0:0:58,0:2076,0:-187.111,-17.4597,0,-187.111,-17.4597,-187.111	1/2:71:0,37,33:0:0:37,33:1320,1167:-202.652,-95.0432,-83.9051,-107.604,0,-97.6701	1/2:49:0,16,33:0:0:16,33:576,1155:-141.316,-94.3142,-89.4977,-47.3585,0,-37.4245	1/2:97:0,50,46:0:0:50,46:1773,1592:-273.809,-129.36,-114.308,-144.44,0,-130.593	1/1:127:1,124,0:1:36:124,0:4440,0:-396.228,-34.362,0,-396.529,-37.3277,-399.466	1/1:8:0,8,0:0:0:8,0:284,0:-25.9029,-2.40824,0,-25.9029,-2.40824,-25.9029	1/1:96:0,96,0:0:0:96,0:3448,0:-310.532,-28.8989,0,-310.532,-28.8989,-310.532	1/1:20:0,20,0:0:0:20,0:691,0:-62.5088,-6.0206,0,-62.5088,-6.0206,-62.5088	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:92:0,92,0:0:0:92,0:3273,0:-294.79,-27.6948,0,-294.79,-27.6948,-294.79	1/1:35:0,35,0:0:0:35,0:1245,0:-112.353,-10.5361,0,-112.353,-10.5361,-112.353	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:9:0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chr01	15766055	.	CTCA	CTCG	109210	PASS	AB=0.490625;ABP=5.94179;AC=148;AF=0.787234;AN=188;AO=5271;CIGAR=3M1X;DP=7251;DPB=7251.25;DPRA=0;EPP=11448.8;EPPR=4263.44;GTI=5;LEN=1;MEANALT=1.19149;MQM=59.9051;MQMR=59.9796;NS=94;NUMALT=1;ODDS=0.194559;PAIRED=0;PAIREDR=0;PAO=1;PQA=36;PQR=0;PRO=0;QA=188059;QR=69254;RO=1962;RPL=0;RPP=11448.8;RPPR=4263.44;RPR=5271;RUN=1;SAF=5271;SAP=11448.8;SAR=0;SRF=1962;SRP=4263.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	0/1:87:46,40:46:1642:40:1440:-103.649,0,-121.821	1/1:78:0,78:0:0:78:2771:-249.602,-23.4803,0	1/1:173:1,172:1:36:172:6140:-549.089,-48.4799,0	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	1/1:29:0,28:0:0:28:1004:-90.3161,-8.42884,0	0/1:179:87,91:87:3065:91:3234:-237.326,0,-222.137	1/1:93:0,93:0:0:93:3332:-299.159,-27.9958,0	0/1:81:34,47:34:1194:47:1669:-126.113,0,-83.3802	1/1:98:0,96:0:0:96:3436:-308.996,-28.8989,0	1/1:52:0,52:0:0:52:1860:-167.671,-15.6536,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	0/1:67:35,32:35:1227:32:1152:-83.8211,0,-90.5637	1/1:57:0,57:0:0:57:2039:-183.781,-17.1587,0	0/1:61:28,33:28:976:33:1184:-88.5055,0,-69.7875	1/1:65:0,65:0:0:65:2328:-209.757,-19.567,0	1/1:65:0,65:0:0:65:2328:-209.779,-19.567,0	0/1:62:29,33:29:1005:33:1179:-87.7534,0,-72.0946	0/1:62:31,31:31:1088:31:1112:-81.7275,0,-79.5632	0/1:168:93,75:93:3302:75:2672:-190.148,0,-246.824	0/1:104:50,54:50:1742:54:1940:-143.569,0,-125.736	0/1:123:68,55:68:2418:55:1968:-140.368,0,-180.85	1/1:76:0,76:0:0:76:2723:-245.313,-22.8783,0	1/1:80:0,80:0:0:80:2850:-256.706,-24.0824,0	1/1:66:4,61:4:142:61:2188:-184.055,-6.79658,0	0/1:227:103,124:103:3626:124:4452:-332.507,0,-258.215	0/1:172:93,79:93:3276:79:2814:-201.72,0,-243.285	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	1/1:198:0,198:0:0:198:7089:-638.058,-59.6039,0	1/1:56:2,53:2:71:53:1875:-162.285,-10.1728,0	0/1:65:31,34:31:1085:34:1207:-89.3683,0,-78.3911	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:13:0,13:0:0:13:463:-41.9996,-3.91339,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:211:103,108:103:3670:108:3842:-282.459,0,-266.988	0/1:127:75,52:75:2668:52:1855:-128.997,0,-202.135	0/1:73:34,38:34:1198:38:1340:-98.819,0,-86.0901	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:106:59,47:59:2091:47:1684:-119.938,0,-156.55	1/1:52:0,52:0:0:52:1855:-167.229,-15.6536,0	1/1:84:0,84:0:0:84:2985:-268.882,-25.2865,0	1/1:63:0,63:0:0:63:2248:-202.584,-18.9649,0	1/1:66:0,66:0:0:66:2339:-210.725,-19.868,0	1/1:79:0,78:0:0:78:2779:-250.067,-23.4803,0	1/1:78:0,77:0:0:77:2744:-246.922,-23.1793,0	0/1:82:48,33:48:1695:33:1180:-81.7635,0,-128.093	0/1:92:34,58:34:1201:58:2072:-159.042,0,-80.7017	0/1:71:39,32:39:1362:32:1140:-81.5345,0,-101.501	1/1:162:0,162:0:0:162:5755:-518.067,-48.7669,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:104:0,104:0:0:104:3730:-335.899,-31.3071,0	1/1:34:0,34:0:0:34:1190:-107.401,-10.235,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:80:0,80:0:0:80:2832:-255.113,-24.0824,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:3:0,3:0:0:3:100:-9.33044,-0.90309,0	0/1:13:5,8:5:174:8:288:-22.3362,0,-12.0879	1/1:27:0,27:0:0:27:953:-86.0787,-8.12781,0	1/1:121:0,121:0:0:121:4309:-387.986,-36.4246,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:150:0,149:0:0:149:5348:-480.934,-44.8535,0	0/1:117:55,62:55:1947:62:2213:-164.199,0,-140.285	0/1:25:10,15:10:338:15:536:-41.0491,0,-23.2205	1/1:70:0,70:0:0:70:2475:-223.003,-21.0721,0	1/1:111:2,108:2:72:108:3843:-339.224,-26.6364,0	1/1:93:2,91:2:72:91:3248:-285.705,-21.1591,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:71:1,70:1:36:70:2490:-220.753,-17.7749,0	0/1:76:34,41:34:1190:41:1463:-109.028,0,-84.4665	0/1:8:7,1:7:249:1:36:-1.19004,0,-20.3473	0/1:109:31,78:31:1094:78:2796:-219.067,0,-65.9568	0/1:45:30,15:30:1059:15:525:-34.029,0,-82.0745	0/1:113:51,62:51:1782:62:2203:-164.511,0,-126.645	0/1:122:61,61:61:2154:61:2184:-160.1,0,-157.401	0/1:57:39,18:39:1377:18:644:-41.1203,0,-107.064	0/1:48:26,22:26:929:22:779:-55.9826,0,-69.4788	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:73:0,73:0:0:73:2616:-235.665,-21.9752,0	0/1:61:39,22:39:1385:22:788:-52.882,0,-106.585	0/1:182:89,93:89:3136:93:3320:-244.23,0,-227.679	0/1:85:43,42:43:1515:42:1487:-108.536,0,-111.054	0/1:85:51,34:51:1811:34:1224:-84.8795,0,-137.683	0/1:99:52,47:52:1816:47:1666:-120.354,0,-133.917	0/1:161:87,73:87:3092:73:2595:-185.247,0,-229.96	0/1:41:20,21:20:697:21:748:-55.2998,0,-50.7094	1/1:66:0,65:0:0:65:2299:-206.83,-19.567,0	1/1:72:0,71:0:0:71:2536:-228.132,-21.3731,0	1/1:45:0,45:0:0:45:1583:-142.729,-13.5464,0	0/1:107:57,50:57:2037:50:1796:-129.712,0,-151.392	0/1:66:43,23:43:1512:23:810:-53.351,0,-116.504	1/1:64:0,63:0:0:63:2252:-202.583,-18.9649,0	1/1:108:0,108:0:0:108:3876:-349.031,-32.5112,0
chr01	15766169	.	C	G	35258.3	PASS	AB=0.526569;ABP=27.2416;AC=44;AF=0.234043;AN=188;AO=2095;CIGAR=1X;DP=7129;DPB=7129;DPRA=1.56485;EPP=4534.89;EPPR=10860.5;GTI=4;LEN=1;MEANALT=1.06522;MQM=59.7737;MQMR=59.9867;NS=94;NUMALT=1;ODDS=0.0543299;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74336;QR=179156;RO=5028;RPL=3;RPP=4526.22;RPPR=10774;RPR=2092;RUN=1;SAF=1;SAP=4543.56;SAR=2094;SRF=12;SRP=10817.2;SRR=5016;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:103:47,56:47:1692:56:1971:-146.627,0,-121.561	0/0:79:79,0:79:2816:0:0:0,-23.7814,-253.59	0/0:145:145,0:145:5192:0:0:0,-43.6493,-467.419	0/0:52:52,0:52:1850:0:0:0,-15.6536,-166.779	0/0:30:30,0:30:1062:0:0:0,-9.0309,-95.89	0/1:98:43,55:43:1535:55:1941:-145.462,0,-108.941	0/0:139:139,0:139:4971:0:0:0,-41.8432,-447.539	0/1:60:26,34:26:927:34:1211:-91.2314,0,-65.6856	0/0:128:127,0:127:4530:0:0:0,-38.2308,-407.508	0/0:74:74,0:74:2617:0:0:0,-22.2762,-235.777	0/0:62:62,0:62:2187:0:0:0,-18.6639,-197.093	0/1:68:25,43:25:896:43:1519:-116.528,0,-60.4903	0/0:86:86,0:86:3037:0:0:0,-25.8886,-273.561	0/1:55:27,28:27:959:28:1004:-74.1086,0,-70.0687	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:78:78,0:78:2774:0:0:0,-23.4803,-249.901	0/1:57:26,31:26:932:31:1098:-81.9712,0,-67.0402	0/1:58:35,23:35:1236:23:819:-56.5666,0,-94.0845	0/1:77:40,37:40:1440:37:1310:-94.9826,0,-106.718	0/1:98:39,59:39:1400:59:2091:-158.951,0,-96.7982	0/1:22:7,15:7:252:15:532:-41.5904,0,-16.4063	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.384	0/0:44:43,1:43:1544:1:36:0,-9.64704,-135.655	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:385:173,212:173:6200:212:7554:-563.96,0,-442.2	0/1:90:46,44:46:1656:44:1561:-113.687,0,-122.236	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/0:186:185,0:185:6621:0:0:0,-55.6905,-595.605	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/1:92:35,57:35:1247:57:2027:-155.003,0,-84.8393	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:179:88,91:88:3151:91:3211:-235.22,0,-229.93	0/1:194:93,101:93:3317:101:3545:-260.851,0,-240.343	0/1:76:37,39:37:1324:39:1392:-102.701,0,-96.5838	1/1:5:0,5:0:0:5:180:-16.5517,-1.50515,0	0/1:118:65,53:65:2315:53:1881:-134.044,0,-173.089	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.664	0/0:72:72,0:72:2554:0:0:0,-21.6742,-230.11	0/0:56:56,0:56:1979:0:0:0,-16.8577,-178.384	0/0:43:43,0:43:1512:0:0:0,-12.9443,-136.37	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/1:162:84,77:84:2973:77:2756:-199.387,0,-218.97	0/1:60:43,17:43:1516:17:604:-36.6288,0,-118.669	0/1:126:64,62:64:2278:62:2199:-160.245,0,-167.351	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.438	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/0:37:37,0:37:1306:0:0:0,-11.1381,-117.84	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:91:91,0:91:3251:0:0:0,-27.3937,-292.803	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:18:9,9:9:297:9:324:-24.0873,0,-21.6317	0/0:64:62,2:62:2215:2:72:0,-12.4292,-192.777	0/0:115:115,0:115:4071:0:0:0,-34.6184,-366.578	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:162:161,0:161:5750:0:0:0,-48.4658,-517.256	0/1:198:100,97:100:3552:97:3469:-252.718,0,-260.226	0/1:48:28,20:28:995:20:707:-49.4933,0,-75.4146	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:128:124,4:124:4413:4:144:0,-25.2182,-384.029	0/0:51:51,0:51:1804:0:0:0,-15.3525,-162.639	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/1:104:43,61:43:1518:61:2171:-164.349,0,-105.605	0/1:16:12,4:12:432:4:140:-8.1281,0,-34.4047	0/1:59:25,34:25:900:34:1205:-90.9842,0,-63.5602	0/1:64:27,37:27:968:37:1323:-100.105,0,-68.1714	0/1:130:48,82:48:1715:82:2915:-222.828,0,-115.501	0/1:159:74,84:74:2660:84:3009:-223.065,0,-191.723	0/1:74:28,46:28:1004:46:1625:-124.261,0,-68.3996	0/1:86:41,45:41:1476:45:1593:-117.746,0,-107.244	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:83:82,1:82:2899:1:36:0,-21.3872,-257.539	0/1:65:31,34:31:1116:34:1188:-87.6546,0,-81.1847	0/1:176:81,95:81:2899:95:3351:-248.791,0,-208.164	0/1:87:46,41:46:1609:41:1456:-105.132,0,-118.905	0/1:61:35,26:35:1256:26:928:-65.4749,0,-94.9825	0/1:86:44,42:44:1565:42:1460:-105.573,0,-115.251	0/1:130:50,80:50:1780:80:2836:-216.342,0,-121.349	0/1:45:13,32:13:451:32:1139:-89.2316,0,-27.3735	0/0:48:48,0:48:1683:0:0:0,-14.4494,-151.753	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/0:61:61,0:61:2162:0:0:0,-18.3628,-194.846	0/1:105:63,42:63:2238:42:1484:-102.237,0,-170.075	0/1:63:27,36:27:953:36:1283:-96.8036,0,-67.1184	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:82:82,0:82:2872:0:0:0,-24.6845,-258.713
chr01	15953434	.	C	T	21958.5	PASS	AB=0.529116;ABP=20.5868;AC=42;AF=0.223404;AN=188;AO=1281;CIGAR=1X;DP=5170;DPB=5170;DPRA=1.19082;EPP=2732.8;EPPR=8247.1;GTI=1;LEN=1;MEANALT=1;MQM=59.9696;MQMR=59.9573;NS=94;NUMALT=1;ODDS=0.728462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45883;QR=139232;RO=3888;RPL=6;RPP=2732.8;RPPR=8247.1;RPR=1275;RUN=1;SAF=1281;SAP=2784.67;SAR=0;SRF=3888;SRP=8445.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:125:125,0:125:4474:0:0:0,-37.6287,-402.783	0/0:125:124,1:124:4435:1:36:0,-34.0305,-395.723	0/0:13:12,1:12:413:1:36:0,-0.315115,-33.8994	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:55:25,30:25:900:30:1080:-80.9566,0,-64.7644	0/0:98:96,2:96:3426:2:72:0,-22.6642,-301.716	0/1:67:22,45:22:779:45:1596:-123.758,0,-50.2631	0/0:52:52,0:52:1850:0:0:0,-15.6536,-166.779	0/0:31:30,1:30:1076:1:36:0,-5.73365,-93.5546	0/0:91:90,1:90:3236:1:36:0,-23.7955,-287.817	0/1:39:27,12:27:964:12:432:-27.481,0,-75.3367	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:58:28,30:28:1008:30:1080:-80.0535,0,-73.5766	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:30:16,14:16:576:14:496:-35.9434,0,-43.1441	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:33:9,24:9:324:24:864:-68.1486,0,-19.5719	0/1:95:45,50:45:1612:50:1796:-133.324,0,-116.772	0/1:35:11,24:11:396:24:849:-66.1926,0,-25.4467	0/0:54:49,5:49:1756:5:165:0,-1.08202,-143.064	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8336	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:144:62,82:62:2219:82:2932:-220.766,0,-156.625	0/1:79:32,47:32:1152:47:1684:-128.066,0,-80.2088	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5792	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.62	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:56:17,39:17:612:39:1404:-109.802,0,-38.5558	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5461	0/0:16:15,1:15:536:1:27:0,-2.1167,-45.875	0/1:152:80,72:80:2855:72:2588:-187.412,0,-211.431	0/1:47:30,17:30:1080:17:612:-41.265,0,-83.3648	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:111:55,56:55:1959:56:2008:-147.579,0,-143.007	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:39:39,0:39:1352:0:0:0,-11.7402,-121.973	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:92:45,47:45:1620:47:1688:-124.426,0,-118.395	0/1:39:17,22:17:603:22:792:-59.8655,0,-42.8593	0/1:66:33,33:33:1184:33:1184:-87.0003,0,-87.0003	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:136:135,0:135:4826:0:0:0,-40.639,-434.134	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5457	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.413	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:160:160,0:160:5714:0:0:0,-48.1648,-514.37	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.402	0/1:41:22,19:22:792:19:684:-49.5481,0,-59.2634	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.635	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:90:88,2:88:3160:2:72:0,-20.256,-277.787	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:39:17,22:17:608:22:792:-59.8655,0,-43.3119	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:76:32,44:32:1148:44:1565:-118.261,0,-80.7516	0/1:71:28,43:28:1004:43:1529:-116.528,0,-69.3027	0/1:71:32,39:32:1152:39:1396:-104.566,0,-82.6124	0/1:150:73,77:73:2609:77:2768:-204.206,0,-189.902	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	0/1:76:42,34:42:1508:34:1212:-86.508,0,-113.136	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5744	0/0:65:64,1:64:2292:1:36:0,-15.9738,-202.948	0/1:61:36,25:36:1292:25:900:-62.9297,0,-98.2209	0/1:101:58,43:58:2088:43:1540:-108.489,0,-157.783	0/1:57:23,34:23:828:34:1209:-91.9554,0,-57.6854	0/1:40:22,18:22:792:18:648:-46.6107,0,-59.5645	0/1:44:21,23:21:752:23:828:-61.5988,0,-54.7609	0/1:116:51,65:51:1828:65:2336:-175.58,0,-129.881	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:66:32,34:32:1144:34:1207:-89.0673,0,-83.4015	0/1:58:19,39:19:684:39:1400:-108.839,0,-44.4306	0/0:96:96,0:96:3435:0:0:0,-28.8989,-309.363	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.374
chr01	15953464	.	A	G	77760.1	PASS	AB=0.461179;ABP=33.8633;AC=146;AF=0.776596;AN=188;AO=3759;CIGAR=1X;DP=5046;DPB=5046;DPRA=18.0753;EPP=8165.58;EPPR=2793.35;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.962;MQMR=59.9899;NS=94;NUMALT=1;ODDS=0.32077;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132844;QR=45969;RO=1285;RPL=3759;RPP=8165.58;RPPR=2793.35;RPR=0;RUN=1;SAF=3759;SAP=8165.58;SAR=0;SRF=1285;SRP=2793.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:121:0,121:0:0:121:4309:-387.944,-36.4246,0	1/1:121:1,120:1:36:120:4231:-377.375,-32.8264,0	1/1:12:0,12:0:0:12:414:-37.5843,-3.61236,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:55:31,24:31:1104:24:833:-58.7272,0,-83.114	1/1:98:2,96:2:72:96:3363:-296.051,-22.6642,0	0/1:67:46,21:46:1644:21:733:-46.1207,0,-128.08	1/1:52:0,52:0:0:52:1830:-164.977,-15.6536,0	1/1:30:1,29:1:36:29:1025:-88.9624,-5.43263,0	1/1:89:0,89:0:0:89:3137:-282.539,-26.7917,0	0/1:39:12,27:12:432:27:937:-72.9007,0,-27.481	1/1:48:0,48:0:0:48:1702:-153.464,-14.4494,0	0/1:57:29,28:29:1044:28:992:-72.4357,0,-77.1161	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:32:16,16:16:567:16:558:-40.9135,0,-41.7278	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:33:24,9:24:856:9:311:-18.3897,0,-67.4271	0/1:95:50,45:50:1796:45:1579:-113.8,0,-133.324	0/1:34:23,11:23:824:11:388:-25.0214,0,-64.2483	1/1:56:5,51:5:180:51:1813:-146.886,-0.305615,0	1/1:25:0,25:0:0:25:876:-79.157,-7.52575,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:143:85,58:85:3036:58:2044:-141.182,0,-230.423	0/1:78:49,29:49:1748:29:1007:-67.4569,0,-134.124	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:106:0,106:0:0:106:3767:-339.221,-31.9092,0	1/1:64:0,64:0:0:64:2269:-204.471,-19.2659,0	0/1:56:39,17:39:1400:17:608:-38.1943,0,-109.442	1/1:13:0,13:0:0:13:440:-39.9219,-3.91339,0	1/1:20:0,20:0:0:20:703:-63.5935,-6.0206,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:15:1,14:1:36:14:495:-41.2848,-0.917175,0	0/1:152:75,77:75:2679:77:2699:-197.398,0,-195.598	0/1:49:17,32:17:612:32:1127:-86.987,0,-40.663	0/1:22:9,13:9:324:13:458:-34.9318,0,-22.8832	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:111:56,55:56:2008:55:1956:-142.738,0,-147.579	1/1:30:0,30:0:0:30:1056:-95.3509,-9.0309,0	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	1/1:46:0,46:0:0:46:1617:-145.817,-13.8474,0	1/1:33:0,33:0:0:33:1146:-103.444,-9.93399,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:57:0,57:0:0:57:2017:-181.801,-17.1587,0	0/1:89:45,44:45:1612:44:1559:-113.809,0,-118.578	0/1:40:23,17:23:828:17:596:-41.9266,0,-62.8029	0/1:67:34,33:34:1207:33:1151:-83.7249,0,-88.7663	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:72:1,70:1:36:70:2476:-219.494,-18.1347,0	1/1:34:0,34:0:0:34:1202:-108.484,-10.235,0	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	1/1:127:0,127:0:0:127:4429:-398.788,-38.2308,0	1/1:20:0,20:0:0:20:703:-63.5935,-6.0206,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	1/1:28:0,28:0:0:28:957:-86.4353,-8.42884,0	1/1:93:0,93:0:0:93:3290:-296.321,-27.9958,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:156:0,155:0:0:155:5505:-495.219,-46.6597,0	1/1:65:0,65:0:0:65:2294:-206.719,-19.567,0	0/1:40:19,21:19:680:21:748:-55.6041,0,-49.488	1/1:50:0,50:0:0:50:1788:-161.2,-15.0515,0	1/1:123:0,123:0:0:123:4355:-392.127,-37.0267,0	1/1:88:1,87:1:36:87:3058:-271.851,-22.8924,0	1/1:22:0,22:0:0:22:776:-70.1622,-6.62266,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:38:21,17:21:756:17:608:-43.6129,0,-56.9281	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/1:72:43,29:43:1520:29:1016:-70.0776,0,-115.419	0/1:69:42,27:42:1482:27:942:-64.3213,0,-112.902	0/1:71:40,31:40:1432:31:1066:-74.87,0,-107.804	0/1:147:75,72:75:2680:72:2579:-188.107,0,-197.194	0/1:31:16,15:16:576:15:532:-38.8812,0,-42.8431	0/1:76:33,43:33:1171:43:1523:-114.484,0,-82.8184	1/1:14:0,14:0:0:14:500:-45.3353,-4.21442,0	1/1:63:0,63:0:0:63:2252:-202.939,-18.9649,0	0/1:58:26,32:26:924:32:1128:-84.3685,0,-65.9895	0/1:99:44,55:44:1580:55:1968:-147.591,0,-112.69	0/1:54:33,21:33:1188:21:735:-50.2158,0,-90.973	0/1:38:18,20:18:648:20:703:-52.1544,0,-47.2127	0/1:43:22,21:22:792:21:752:-55.062,0,-58.6614	0/1:114:66,48:66:2368:48:1704:-119.329,0,-179.061	0/1:16:10,6:10:360:6:207:-14.1504,0,-27.9278	1/1:62:0,62:0:0:62:2207:-198.895,-18.6639,0	1/1:72:0,72:0:0:72:2519:-226.961,-21.6742,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:61:33,28:33:1184:28:995:-71.5012,0,-88.5055	0/1:58:40,18:40:1431:18:631:-39.6559,0,-111.627	1/1:90:0,90:0:0:90:3220:-290.023,-27.0927,0	1/1:83:0,83:0:0:83:2932:-264.114,-24.9855,0
chr01	15961203	.	G	A	188805	PASS	AB=0.525589;ABP=38.0167;AC=146;AF=0.776596;AN=188;AO=9383;CIGAR=1X;DP=12342;DPB=12342;DPRA=44.2258;EPP=20213.2;EPPR=6385.01;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.9921;MQMR=59.9932;NS=94;NUMALT=1;ODDS=0.282111;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=324675;QR=105444;RO=2955;RPL=16;RPP=20239.2;RPPR=6411.03;RPR=9367;RUN=1;SAF=9380;SAP=20351.9;SAR=3;SRF=2952;SRP=6393.68;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:73:0,73:0:0:73:2463:-221.916,-21.9752,0	0/1:214:113,101:113:4049:101:3487:-249.619,0,-300.175	1/1:173:0,173:0:0:173:6039:-543.623,-52.0782,0	1/1:307:3,304:3:108:304:10617:-945.384,-82.341,0	1/1:129:0,129:0:0:129:4423:-398.242,-38.8329,0	1/1:114:1,113:1:36:113:3912:-348.675,-30.7191,0	0/1:200:82,118:82:2914:118:4073:-306.552,0,-202.287	1/1:147:0,147:0:0:147:4998:-449.973,-44.2514,0	0/1:182:92,90:92:3240:90:3103:-224.705,0,-237.031	1/1:142:0,141:0:0:141:4892:-440.225,-42.4452,0	1/1:62:0,62:0:0:62:2184:-196.827,-18.6639,0	1/1:95:0,95:0:0:95:3323:-299.289,-28.5979,0	0/1:99:52,47:52:1847:47:1676:-121.325,0,-136.707	1/1:90:0,90:0:0:90:3159:-284.533,-27.0927,0	0/1:97:42,55:42:1480:55:1968:-148.195,0,-104.292	1/1:71:0,71:0:0:71:2516:-226.693,-21.3731,0	1/1:64:0,64:0:0:64:2262:-203.84,-19.2659,0	0/1:76:29,47:29:1040:47:1676:-128.249,0,-71.0361	0/1:49:26,23:26:936:23:828:-60.0936,0,-69.809	0/1:184:74,110:74:2645:110:3830:-289.506,0,-182.905	0/1:203:104,99:104:3717:99:3416:-246.534,0,-273.616	0/1:79:47,32:47:1672:32:1091:-74.708,0,-126.986	1/1:136:0,136:0:0:136:4625:-416.416,-40.9401,0	1/1:198:12,185:12:432:185:6493:-545.247,-20.3401,0	1/1:106:1,105:1:36:105:3623:-322.676,-28.3109,0	0/1:460:200,260:200:7110:260:8816:-654.971,0,-501.485	0/1:242:91,151:91:3260:151:5327:-406.718,0,-220.771	1/1:45:0,45:0:0:45:1581:-142.578,-13.5464,0	1/1:396:1,395:1:36:395:13684:-1227.76,-115.61,0	1/1:147:0,146:0:0:146:4991:-448.978,-43.9504,0	0/1:154:67,87:67:2351:87:3029:-226.478,0,-165.486	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	1/1:19:0,19:0:0:19:661:-59.8116,-5.71957,0	0/1:290:150,140:150:5384:140:4924:-356.014,0,-397.391	0/1:200:94,106:94:3328:106:3580:-262.195,0,-239.53	0/1:75:40,35:40:1427:35:1214:-86.9827,0,-106.15	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:229:87,142:87:3101:142:4875:-369.97,0,-210.381	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	1/1:254:0,254:0:0:254:8734:-786.064,-76.4616,0	1/1:134:0,134:0:0:134:4735:-426.309,-40.338,0	1/1:58:0,58:0:0:58:1858:-167.481,-17.4597,0	1/1:198:1,197:1:36:197:6822:-610.457,-56.0057,0	1/1:129:2,127:2:72:127:4281:-378.63,-31.9961,0	0/1:230:93,137:93:3325:137:4644:-348.884,0,-230.229	0/1:156:90,66:90:3228:66:2273:-157.865,0,-243.781	0/1:168:74,94:74:2652:94:3301:-246.733,0,-188.353	1/1:221:0,221:0:0:221:7693:-692.41,-66.5276,0	1/1:15:0,15:0:0:15:517:-46.8546,-4.51545,0	1/1:205:0,205:0:0:205:7163:-644.731,-61.7112,0	1/1:84:0,84:0:0:84:2885:-259.885,-25.2865,0	1/1:29:0,29:0:0:29:1021:-92.2003,-8.72987,0	1/1:195:0,195:0:0:195:6413:-577.269,-58.7009,0	1/1:118:4,114:4:144:114:3921:-339.771,-22.2079,0	1/1:18:0,18:0:0:18:618:-55.9382,-5.41854,0	0/1:15:7,8:7:252:8:258:-19.0175,0,-18.5135	1/1:103:0,103:0:0:103:3558:-320.426,-31.0061,0	1/1:125:0,125:0:0:125:4363:-392.843,-37.6288,0	1/1:10:0,10:0:0:10:311:-28.2908,-3.0103,0	1/1:232:1,231:1:36:231:7904:-707.805,-66.2407,0	1/1:233:2,231:2:72:231:7872:-701.69,-63.3033,0	0/1:109:46,63:46:1652:63:2136:-159.685,0,-116.156	1/1:125:0,125:0:0:125:4371:-393.562,-37.6288,0	1/1:158:1,157:1:36:157:5453:-487.304,-43.9645,0	1/1:82:2,80:2:72:80:2758:-241.62,-17.8477,0	1/1:34:0,34:0:0:34:1186:-107.041,-10.235,0	1/1:92:1,91:1:32:91:3192:-284.302,-24.4954,0	0/1:124:69,55:69:2468:55:1887:-132.776,0,-185.046	0/1:40:20,20:20:705:20:693:-50.6484,0,-51.7316	0/1:156:68,88:68:2402:88:3054:-228.124,0,-169.474	0/1:42:24,18:24:864:18:586:-40.402,0,-65.4393	0/1:232:111,121:111:3952:121:4271:-314.729,0,-286.032	0/1:278:140,138:140:5001:138:4895:-357.015,0,-366.55	0/1:146:69,77:69:2472:77:2646:-194.431,0,-178.783	0/1:133:63,70:63:2264:70:2447:-180.422,0,-163.985	1/1:19:0,19:0:0:19:668:-60.4457,-5.71957,0	1/1:165:0,165:0:0:165:5657:-509.258,-49.67,0	0/1:150:69,81:69:2438:81:2754:-202.937,0,-174.518	0/1:300:151,148:151:5416:148:5067:-365.811,0,-397.201	0/1:175:90,85:90:3236:85:2998:-217.371,0,-238.78	0/1:87:40,47:40:1436:47:1655:-123.046,0,-103.348	0/1:137:73,64:73:2620:64:2234:-160.074,0,-194.806	0/1:205:97,108:97:3463:108:3765:-277.338,0,-250.171	0/1:60:26,34:26:928:34:1205:-90.6921,0,-65.7765	1/1:95:0,95:0:0:95:3364:-302.977,-28.5979,0	1/1:84:0,84:0:0:84:2927:-263.661,-25.2865,0	1/1:45:0,45:0:0:45:1574:-141.941,-13.5464,0	0/1:64:35,29:35:1251:29:1021:-72.9343,0,-93.6284	0/1:106:69,37:69:2446:37:1307:-86.0222,0,-188.483	1/1:159:0,159:0:0:159:5400:-486.131,-47.8638,0	1/1:155:1,154:1:36:154:5435:-485.682,-43.0614,0
chr01	15961248	.	T	A	480162	PASS	AB=0.543166;ABP=182.419;AC=147;AF=0.781915;AN=188;AO=17694;CIGAR=1X;DP=22810;DPB=22810;DPRA=0;EPP=38399;EPPR=11029.8;GTI=0;LEN=1;MEANALT=1.17021;MQM=59.9929;MQMR=59.9996;NS=94;NUMALT=1;ODDS=12.7212;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=632454;QR=179254;RO=5094;RPL=9677;RPP=341.188;RPPR=204.788;RPR=8017;RUN=1;SAF=9674;SAP=338.747;SAR=8020;SRF=2887;SRP=200.122;SRR=2207;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:128:1,127:1:36:127:4538:-404.988,-34.9336,0	0/1:375:169,206:169:5938:206:7356:-549.201,0,-421.644	1/1:298:0,295:0:0:295:10564:-950.339,-88.8039,0	1/1:611:3,608:3:108:608:21723:-1944.44,-173.854,0	1/1:209:0,209:0:0:209:7471:-672.434,-62.9153,0	1/1:214:1,213:1:36:213:7644:-684.395,-60.8221,0	0/1:362:160,202:160:5670:202:7211:-540.072,0,-401.45	1/1:363:0,363:0:0:363:12984:-1168.37,-109.274,0	0/1:286:128,157:128:4501:157:5619:-419.678,0,-319.109	1/1:278:0,278:0:0:278:9936:-894.181,-83.6863,0	1/1:176:0,175:0:0:175:6258:-562.953,-52.6803,0	1/1:189:0,188:0:0:188:6705:-603.165,-56.5936,0	0/1:188:91,97:91:3186:97:3476:-256.458,0,-230.369	1/1:225:1,224:1:36:224:8017:-717.949,-64.1335,0	0/1:179:79,100:79:2790:100:3552:-266.002,0,-197.455	1/1:188:0,188:0:0:188:6711:-604.065,-56.5936,0	1/1:187:0,187:0:0:187:6679:-601.186,-56.2926,0	0/1:156:70,86:70:2433:86:3072:-229.748,0,-172.264	0/1:136:68,67:68:2368:67:2404:-175.618,0,-172.374	0/1:335:135,200:135:4743:200:7160:-543.61,0,-326.185	0/1:409:201,208:201:7084:208:7416:-544.358,0,-514.504	0/1:138:79,59:79:2746:59:2120:-149.526,0,-205.836	1/1:212:0,212:0:0:212:7573:-681.61,-63.8184,0	1/1:296:14,282:14:489:282:10097:-864.321,-44.766,0	1/1:182:0,182:0:0:182:6505:-585.534,-54.7875,0	0/1:712:298,414:298:10518:414:14785:-1116.05,0,-732.211	0/1:496:192,304:192:6707:304:10878:-829.609,0,-454.399	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	1/1:753:2,750:2:72:750:26779:-2402.5,-219.898,0	1/1:311:0,311:0:0:311:11091:-998.075,-93.6203,0	0/1:294:125,169:125:4422:169:6035:-454.749,0,-309.651	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:17:7,10:7:252:10:352:-26.9007,0,-17.9114	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:29:0,28:0:0:28:1008:-90.6765,-8.42884,0	0/1:519:240,279:240:8483:279:9982:-742.064,0,-607.244	0/1:330:138,192:138:4890:192:6858:-517.946,0,-340.912	0/1:179:82,97:82:2887:97:3473:-258.896,0,-206.182	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/1:364:155,209:155:5416:209:7432:-559.307,0,-377.996	1/1:116:0,116:0:0:116:4127:-371.616,-34.9195,0	1/1:380:1,379:1:21:379:13541:-1216.38,-112.291,0	1/1:239:0,239:0:0:239:8521:-766.891,-71.9462,0	1/1:151:0,151:0:0:151:5341:-480.824,-45.4555,0	1/1:299:0,299:0:0:299:10687:-961.739,-90.008,0	1/1:252:0,252:0:0:252:8965:-806.831,-75.8596,0	0/1:357:145,212:145:5056:212:7581:-574.86,0,-347.721	0/1:274:152,122:152:5338:122:4379:-311.8,0,-398.069	0/1:375:195,180:195:6854:180:6445:-467.249,0,-504.046	1/1:321:0,320:0:0:320:11444:-1029.63,-96.3296,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:366:0,366:0:0:366:13098:-1178.63,-110.177,0	1/1:136:0,136:0:0:136:4883:-439.621,-40.9401,0	1/1:65:0,65:0:0:65:2295:-206.808,-19.567,0	1/1:297:0,297:0:0:297:10541:-948.609,-89.4059,0	1/1:221:4,217:4:144:217:7751:-684.308,-53.214,0	1/1:21:0,21:0:0:21:735:-66.4714,-6.32163,0	0/1:18:8,10:8:280:10:360:-27.3258,0,-20.1208	1/1:230:1,229:1:36:229:8201:-734.503,-65.6386,0	1/1:269:0,268:0:0:268:9583:-862.212,-80.676,0	1/1:16:0,16:0:0:16:557:-50.4556,-4.81648,0	1/1:478:0,478:0:0:478:17120:-1540.43,-143.892,0	1/1:415:2,413:2:72:413:14745:-1319.95,-118.091,0	0/1:176:68,108:68:2347:108:3851:-293.805,0,-158.503	1/1:177:1,176:1:36:176:6311:-564.477,-49.684,0	1/1:358:5,351:5:180:351:12562:-1113.86,-90.9744,0	1/1:196:2,194:2:72:194:6947:-618.457,-52.1652,0	1/1:97:1,96:1:36:96:3430:-305.314,-25.6016,0	1/1:194:1,193:1:36:193:6932:-620.345,-54.8015,0	0/1:224:105,119:105:3669:119:4232:-313.628,0,-262.984	0/1:62:27,35:27:941:35:1241:-93.3286,0,-66.3378	0/1:284:114,168:114:4022:168:5990:-453.957,0,-276.918	0/1:101:50,49:50:1749:49:1741:-126.811,0,-127.528	0/1:422:186,236:186:6524:236:8453:-633.735,0,-460.216	0/1:402:202,199:202:7183:199:7106:-518.524,0,-525.454	0/1:268:107,159:107:3791:159:5655:-428.636,0,-260.955	0/1:271:117,154:117:4168:154:5519:-415.245,0,-293.723	1/1:29:0,29:0:0:29:1035:-93.4631,-8.72987,0	1/1:294:1,293:1:36:293:10490:-940.414,-84.9045,0	0/1:289:122,167:122:4267:167:5973:-450.678,0,-297.213	0/1:507:245,262:245:8732:262:9400:-693.337,0,-633.251	0/1:285:150,135:150:5226:135:4844:-350.319,0,-384.688	0/1:180:90,90:90:3157:90:3240:-237.635,0,-230.17	0/1:247:121,126:121:4295:126:4486:-329.538,0,-312.373	0/1:358:162,194:162:5718:194:6948:-517.898,0,-407.254	0/1:92:34,58:34:1184:58:2079:-159.685,0,-79.1671	1/1:203:0,203:0:0:203:7266:-653.991,-61.1091,0	1/1:176:0,176:0:0:176:6302:-567.271,-52.9813,0	1/1:193:0,193:0:0:193:6927:-623.489,-58.0988,0	0/1:229:118,111:118:4131:111:3968:-288.373,0,-303.039	0/1:175:112,63:112:3926:63:2268:-151.702,0,-300.854	1/1:229:0,229:0:0:229:8212:-739.09,-68.9359,0	1/1: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chr01	15966864	.	G	A	46936.8	PASS	AB=0.289507;ABP=5134.18;AC=82;AF=0.43617;AN=188;AO=3934;CIGAR=1X;DP=14366;DPB=14366;DPRA=6.90139;EPP=8545.58;EPPR=22616.7;GTI=16;LEN=1;MEANALT=1.14607;MQM=59.5267;MQMR=59.9726;NS=94;NUMALT=1;ODDS=1.418;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140798;QR=372606;RO=10414;RPL=3934;RPP=8545.58;RPPR=22616.7;RPR=0;RUN=1;SAF=0;SAP=8545.58;SAR=3934;SRF=10414;SRP=22616.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:82:75,7:75:2684:7:248:0,-2.02026,-219.141	0/1:122:80,42:80:2872:42:1504:-98.9143,0,-221.991	0/1:182:142,40:142:5084:40:1436:-74.714,0,-402.916	0/1:308:255,53:255:9137:53:1888:-77.44,0,-729.578	0/1:103:69,34:69:2464:34:1208:-77.9303,0,-191.008	0/1:55:35,20:35:1226:20:716:-48.1571,0,-94.0831	0/1:142:99,43:99:3532:43:1536:-95.7809,0,-275.344	0/1:238:187,51:187:6700:51:1820:-92.0282,0,-531.419	0/1:172:137,34:137:4924:34:1212:-57.5505,0,-391.472	0/1:126:80,46:80:2852:46:1640:-109.929,0,-218.989	0/1:58:31,26:31:1108:26:928:-66.3061,0,-82.5125	0/1:120:72,48:72:2588:48:1716:-118.495,0,-197.045	0/1:134:76,58:76:2728:58:2080:-147.096,0,-205.425	0/1:93:34,59:34:1224:59:2108:-161.944,0,-82.4713	0/1:123:53,70:53:1881:70:2516:-189.41,0,-132.54	0/1:101:49,52:49:1764:52:1872:-138.274,0,-128.64	0/1:94:21,71:21:756:71:2548:-201.479,0,-40.3126	0/1:86:23,63:23:824:63:2260:-177.702,0,-48.5947	0/1:59:29,30:29:1040:30:1072:-78.9595,0,-76.1536	0/1:235:168,67:168:6005:67:2400:-145.514,0,-469.812	0/1:256:211,45:211:7538:45:1612:-68.284,0,-601.395	0/1:136:115,21:115:4128:21:756:-27.4271,0,-330.763	0/1:271:238,33:238:8517:33:1176:-24.5549,0,-684.944	0/1:108:70,38:70:2500:38:1356:-89.8292,0,-192.742	0/1:93:69,24:69:2472:24:852:-48.9597,0,-194.738	0/1:416:342,74:342:12170:74:2644:-112.97,0,-969.915	0/1:340:294,46:294:10521:46:1648:-46.1008,0,-844.454	0/1:34:9,25:9:324:25:900:-71.086,0,-19.2708	0/1:302:243,59:243:8689:59:2112:-99.4135,0,-690.852	0/1:177:140,37:140:5013:37:1316:-65.4371,0,-397.979	0/1:271:237,34:237:8465:34:1216:-28.0976,0,-680.274	0/1:30:26,4:26:928:4:144:-4.28272,0,-74.8074	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:25:24,1:24:864:1:36:0,-3.92747,-74.4843	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:280:109,169:109:3916:169:6064:-461.81,0,-268.605	0/1:248:212,36:212:7570:36:1288:-41.2278,0,-606.683	0/1:97:40,57:40:1440:57:2036:-154.048,0,-100.698	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:170:125,45:125:4481:45:1620:-94.9149,0,-352.282	0/1:54:19,35:19:684:35:1244:-95.9193,0,-45.6347	0/1:197:168,29:168:6009:29:1028:-33.3714,0,-481.582	0/1:125:37,86:37:1328:86:3064:-238.525,0,-82.4358	0/1:101:40,61:40:1420:61:2196:-167.474,0,-97.69	0/1:189:168,21:168:6006:21:744:-10.3601,0,-483.748	0/1:209:161,48:161:5772:48:1712:-91.3423,0,-456.679	0/1:314:250,64:250:8945:64:2300:-112.696,0,-710.504	0/1:125:97,28:97:3450:28:988:-51.6052,0,-273.082	0/1:316:241,74:241:8588:74:2656:-143.958,0,-677.73	0/1:135:110,25:110:3933:25:896:-40.3131,0,-313.522	0/0:16:15,1:15:540:1:36:0,-1.2182,-45.3383	0/1:221:173,48:173:6212:48:1724:-88.9166,0,-492.646	0/1:88:61,27:61:2188:27:960:-60.2093,0,-170.642	0/0:35:32,3:32:1144:3:108:0,-0.46088,-92.4924	0/1:227:198,29:198:7081:29:1028:-24.4988,0,-569.013	0/1:123:108,15:108:3869:15:536:-11.532,0,-311.376	0/0:16:15,1:15:517:1:36:0,-1.2182,-43.2563	0/1:21:19,2:19:684:2:72:-0.515093,0,-55.5687	0/1:153:123,30:123:4416:30:1068:-50.3699,0,-351.551	0/1:125:59,65:59:2120:65:2328:-172.073,0,-153.381	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:349:273,76:273:9808:76:2701:-138.189,0,-777.597	0/1:283:217,66:217:7753:66:2360:-127.418,0,-612.61	0/1:104:56,48:56:1993:48:1689:-120.978,0,-148.335	0/1:105:82,23:82:2948:23:828:-43.2084,0,-233.94	0/0:675:619,56:619:22151:56:2004:0,-22.5951,-1812.4	0/1:254:226,28:226:8062:28:1008:-14.5747,0,-648.361	0/1:42:19,22:19:680:22:792:-58.7947,0,-48.8272	0/1:95:67,28:67:2381:28:1008:-62.2944,0,-185.945	0/1:106:29,76:29:1044:76:2716:-212.704,0,-62.3068	0/1:32:25,7:25:896:7:252:-13.396,0,-71.3274	0/1:170:143,27:143:5098:27:960:-35.5052,0,-407.787	0/1:154:112,42:112:3990:42:1504:-89.117,0,-312.929	0/1:263:229,34:229:8190:34:1208:-29.8552,0,-657.934	0/1:269:223,46:223:7973:46:1656:-68.3376,0,-636.615	0/1:150:91,59:91:3268:59:2116:-145.482,0,-249.185	0/1:192:141,51:141:5048:51:1824:-106.608,0,-396.668	0/0:68:63,5:63:2252:5:180:0,-3.91797,-186.391	0/1:246:166,80:166:5936:80:2876:-184.976,0,-460.29	0/1:170:139,31:139:4973:31:1116:-49.5758,0,-396.542	0/1:352:275,77:275:9808:77:2768:-143.379,0,-776.7	0/1:90:47,43:47:1688:43:1540:-111.787,0,-125.114	0/1:120:61,59:61:2188:59:2116:-154.344,0,-161.062	0/1:124:31,93:31:1116:93:3336:-263.129,0,-63.424	0/1:191:88,103:88:3160:103:3688:-274.555,0,-227.123	0/1:51:15,35:15:540:35:1248:-97.1779,0,-33.5253	0/1:119:46,71:46:1639:71:2548:-193.918,0,-112.218	0/1:92:39,53:39:1400:53:1900:-143.574,0,-98.6044	0/1:56:28,28:28:1000:28:1004:-73.8148,0,-73.4577	0/1:101:72,28:72:2584:28:1008:-60.5511,0,-202.346	0/1:134:72,62:72:2584:62:2220:-159.443,0,-192.471	0/1:278:239,39:239:8580:39:1400:-42.556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chr01	15966918	.	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chr01	16146701	.	T	C	334215	PASS	AB=0.490119;ABP=10.1338;AC=149;AF=0.792553;AN=188;AO=12494;CIGAR=1X;DP=16814;DPB=16814;DPRA=0;EPP=26994.6;EPPR=9329.53;GTI=5;LEN=1;MEANALT=1.05319;MQM=59.9893;MQMR=59.9822;NS=94;NUMALT=1;ODDS=1.10844;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=442739;QR=154208;RO=4315;RPL=6395;RPP=18.2381;RPPR=13.5909;RPR=6099;RUN=1;SAF=6409;SAP=21.2553;SAR=6085;SRF=2235;SRP=15.1006;SRR=2080;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:77:0,77:0:0:77:2735:-246.393,-23.1793,0	0/1:300:142,158:142:5096:158:5624:-415.974,0,-368.471	1/1:339:0,339:0:0:339:12039:-1083.37,-102.049,0	1/1:333:0,333:0:0:333:11896:-1070.5,-100.243,0	1/1:130:1,129:1:36:129:4580:-408.769,-35.5356,0	1/1:108:0,108:0:0:108:3843:-346.065,-32.5112,0	0/1:256:122,134:122:4355:134:4757:-351.226,0,-315.057	1/1:329:0,329:0:0:329:11599:-1043.79,-99.0389,0	0/1:242:140,102:140:5008:102:3613:-252.526,0,-378.018	1/1:164:0,164:0:0:164:5778:-520.138,-49.3689,0	1/1:146:0,146:0:0:146:5154:-464.006,-43.9504,0	1/1:167:1,166:1:36:166:5880:-525.717,-46.6737,0	0/1:165:90,75:90:3207:75:2672:-191.056,0,-239.183	1/1:163:0,163:0:0:163:5723:-515.195,-49.0679,0	0/1:141:76,65:76:2732:65:2310:-165.715,0,-203.675	1/1:106:1,105:1:36:105:3674:-327.267,-28.3109,0	1/1:163:0,163:0:0:163:5739:-516.635,-49.0679,0	0/1:141:74,67:74:2624:67:2359:-170.122,0,-193.961	0/1:121:64,57:64:2254:57:2008:-144.566,0,-166.69	0/1:421:206,215:206:7372:215:7653:-562.075,0,-536.792	0/1:268:130,137:130:4664:137:4843:-355.36,0,-339.246	0/1:124:80,43:80:2864:43:1527:-100.335,0,-220.611	1/1:100:1,99:1:36:99:3509:-312.423,-26.5047,0	1/1:209:11,198:11:396:198:6993:-593.451,-26.9325,0	1/1:139:0,139:0:0:139:4940:-444.751,-41.8432,0	0/1:444:213,231:213:7614:231:8169:-601.572,0,-551.638	0/1:394:201,193:201:7207:193:6894:-501.923,0,-530.077	1/1:78:0,78:0:0:78:2788:-251.161,-23.4803,0	1/1:429:2,426:2:72:426:15159:-1357.23,-122.304,0	1/1:169:2,167:2:72:167:5903:-524.546,-44.0373,0	1/1:198:0,198:0:0:198:7002:-630.02,-59.6039,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:28:0,28:0:0:28:982:-88.6917,-8.42884,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:372:184,188:184:6563:188:6690:-490.197,0,-478.771	0/1:234:124,110:124:4431:110:3927:-283.18,0,-328.521	0/1:182:77,105:77:2750:105:3695:-277.968,0,-192.945	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:194:84,110:84:2979:110:3932:-295.673,0,-209.941	1/1:72:0,72:0:0:72:2551:-229.841,-21.6742,0	1/1:247:0,247:0:0:247:8738:-786.417,-74.3544,0	1/1:183:1,182:1:36:182:6397:-572.229,-51.4902,0	1/1:146:0,146:0:0:146:5148:-463.467,-43.9504,0	1/1:124:0,124:0:0:124:4384:-394.731,-37.3277,0	1/1:179:0,179:0:0:179:6393:-575.459,-53.8844,0	0/1:284:138,146:138:4921:146:5182:-381.029,0,-357.548	0/1:206:109,97:109:3893:97:3435:-247.353,0,-288.551	0/1:381:196,185:196:6993:185:6567:-476.421,0,-514.74	1/1:248:0,248:0:0:248:8843:-795.859,-74.6554,0	1/1:20:0,20:0:0:20:698:-63.1414,-6.0206,0	1/1:250:1,249:1:36:249:8848:-792.709,-71.6592,0	1/1:49:0,49:0:0:49:1740:-156.884,-14.7505,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:221:0,221:0:0:221:7864:-707.791,-66.5276,0	1/1:57:0,57:0:0:57:2035:-183.422,-17.1587,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:14:7,7:7:252:7:243:-17.9931,0,-18.8145	1/1:158:2,156:2:72:156:5546:-492.429,-40.726,0	1/1:197:1,196:1:36:196:6915:-618.824,-55.7046,0	1/1:6:0,6:0:0:6:198:-18.1433,-1.80618,0	1/1:245:0,245:0:0:245:8723:-785.065,-73.7524,0	1/1:397:0,397:0:0:397:14096:-1268.38,-119.509,0	0/1:143:75,68:75:2677:68:2396:-172.848,0,-198.126	1/1:179:0,178:0:0:178:6295:-566.288,-53.5833,0	1/1:259:5,254:5:180:254:9004:-793.792,-61.4147,0	1/1:188:3,185:3:108:185:6561:-580.5,-46.5185,0	1/1:79:0,79:0:0:79:2795:-251.792,-23.7814,0	1/1:150:0,150:0:0:150:5316:-478.575,-45.1545,0	0/1:188:97,91:97:3467:91:3159:-227.943,0,-255.641	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	0/1:135:53,82:53:1886:82:2889:-219.606,0,-129.378	0/1:161:91,70:91:3239:70:2477:-174.717,0,-243.258	0/1:365:179,185:179:6412:185:6545:-479.309,0,-467.342	0/1:334:170,164:170:6116:164:5801:-421.662,0,-449.993	0/1:164:89,75:89:3184:75:2664:-190.636,0,-237.407	0/1:251:123,128:123:4401:128:4565:-335.457,0,-320.702	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:223:2,221:2:72:221:7807:-695.829,-60.293,0	0/1:154:80,74:80:2868:74:2614:-189.147,0,-211.998	0/1:401:217,184:217:7767:184:6535:-467.522,0,-578.348	0/1:202:107,95:107:3802:95:3337:-239.74,0,-281.569	0/1:135:70,65:70:2501:65:2303:-166.892,0,-184.702	0/1:188:92,96:92:3283:96:3370:-246.924,0,-239.096	0/1:277:144,133:144:5142:133:4664:-336.54,0,-379.536	0/1:85:41,44:41:1456:44:1559:-115.013,0,-105.748	1/1:171:0,171:0:0:171:6040:-543.712,-51.4761,0	1/1:141:0,141:0:0:141:4990:-449.251,-42.4452,0	1/1:92:0,92:0:0:92:3251:-292.811,-27.6948,0	0/1:160:89,71:89:3184:71:2499:-176.997,0,-238.619	0/1:160:102,58:102:3640:58:2056:-137.146,0,-279.641	1/1:210:0,210:0:0:210:7462:-671.626,-63.2163,0	1/1:267:1,266:1:36:266:9442:-846.152,-76.7767,0
chr01	16146743	.	A	C	34880.6	PASS	AB=0.505562;ABP=4.09738;AC=39;AF=0.211957;AN=184;AO=2063;CIGAR=1X;DP=8279;DPB=8279;DPRA=1.44306;EPP=4448.08;EPPR=13360.1;GTI=5;LEN=1;MEANALT=1.04651;MQM=59.9811;MQMR=59.9944;NS=92;NUMALT=1;ODDS=0.406005;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73763;QR=222312;RO=6211;RPL=2063;RPP=4482.76;RPPR=13490;RPR=0;RUN=1;SAF=4;SAP=4448.08;SAR=2059;SRF=15;SRP=13360.1;SRR=6196;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:181:97,84:97:3469:84:3008:-216.464,0,-257.934	0/0:240:240,0:240:8585:0:0:0,-72.2472,-772.638	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.514	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:84:48,36:48:1720:36:1296:-91.6574,0,-129.799	0/0:131:131,0:131:4681:0:0:0,-39.4349,-421.45	0/1:128:67,61:67:2412:61:2179:-157.844,0,-178.804	0/0:76:76,0:76:2705:0:0:0,-22.8783,-243.693	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/0:94:94,0:94:3375:0:0:0,-28.2968,-303.964	0/1:89:38,51:38:1359:51:1817:-137.018,0,-95.8182	0/0:67:67,0:67:2403:0:0:0,-20.169,-216.526	0/1:79:44,35:44:1580:35:1252:-89.2014,0,-118.71	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.59	0/1:62:33,29:33:1188:29:1044:-75.6109,0,-88.5647	0/1:51:23,28:23:824:28:1004:-75.3233,0,-59.1308	0/1:206:110,96:110:3932:96:3444:-248.16,0,-292.061	0/1:145:71,74:71:2544:74:2626:-192.935,0,-185.561	0/1:50:20,30:20:720:30:1080:-82.4618,0,-50.0773	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:139:136,3:136:4853:3:108:0,-31.768,-426.848	0/0:89:88,0:88:3143:0:0:0,-26.4906,-282.864	0/1:192:100,92:100:3568:92:3281:-237.711,0,-263.531	0/1:195:92,103:92:3300:103:3664:-271.262,0,-238.518	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:201:199,0:199:7106:0:0:0,-59.905,-639.237	0/0:79:77,2:77:2741:2:72:0,-16.9446,-240.095	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/1:7:5,1:5:180:1:36:-1.43227,0,-14.3861	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:188:99,89:99:3556:89:3189:-230.638,0,-263.654	0/1:123:66,57:66:2368:57:2052:-147.925,0,-176.351	0/1:80:48,32:48:1724:32:1152:-79.8996,0,-131.363	.:.:.:.:.:.:.:.	0/1:53:37,16:37:1320:16:576:-36.2204,0,-103.147	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.219	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/1:128:72,56:72:2588:56:2004:-142.102,0,-194.637	0/1:94:42,52:42:1492:52:1864:-139.743,0,-106.278	0/1:187:94,93:94:3364:93:3325:-243.174,0,-246.684	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.821	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:87:87,0:87:3096:0:0:0,-26.1896,-278.869	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:141:141,0:141:5048:0:0:0,-42.4452,-454.465	0/0:256:256,0:256:9126:0:0:0,-77.0637,-821.156	0/1:65:26,39:26:932:39:1373:-104.3,0,-64.6319	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/0:168:164,4:164:5842:4:144:0,-37.2594,-512.578	0/0:65:62,3:62:2212:3:108:0,-9.49178,-189.27	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:85:42,43:42:1508:43:1538:-113.125,0,-110.427	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:46:31,15:31:1108:15:521:-33.3685,0,-86.1836	0/1:66:32,34:32:1140:34:1216:-89.8704,0,-83.0412	0/1:171:66,105:66:2345:105:3752:-286.405,0,-159.832	0/1:187:95,92:95:3370:92:3300:-240.926,0,-247.222	0/1:87:38,49:38:1364:49:1764:-132.846,0,-96.8711	0/1:130:58,72:58:2088:72:2565:-191.965,0,-149.056	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:126:124,2:124:4444:2:72:0,-31.0931,-393.294	0/1:64:34,30:34:1220:30:1076:-77.8869,0,-90.8409	0/1:215:98,117:98:3516:117:4154:-309.321,0,-251.928	0/1:109:49,60:49:1760:60:2143:-160.325,0,-125.872	0/1:69:38,31:38:1360:31:1108:-79.2599,0,-101.93	0/1:94:41,53:41:1468:53:1896:-142.621,0,-104.119	0/1:145:71,74:71:2548:74:2656:-195.636,0,-185.921	0/1:47:24,22:24:864:22:792:-57.3985,0,-63.8754	0/0:95:95,0:95:3407:0:0:0,-28.5978,-306.843	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:56:21,35:21:756:35:1260:-96.8478,0,-51.5095	0/1:87:28,59:28:1008:59:2112:-164.159,0,-64.8467	0/0:142:142,0:142:5074:0:0:0,-42.7463,-456.802	0/0:161:161,0:161:5771:0:0:0,-48.4658,-519.503
chr01	16162727	.	A	C	40938.8	PASS	AB=0.344495;ABP=1853.47;AC=39;AF=0.207447;AN=188;AO=3056;CIGAR=1X;DP=21286;DPB=21286;DPRA=1.21199;EPP=6630.35;EPPR=39567.2;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9931;MQMR=59.7783;NS=94;NUMALT=1;ODDS=19.8853;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107822;QR=642379;RO=18224;RPL=0;RPP=6639.03;RPPR=3.01221;RPR=3056;RUN=1;SAF=1;SAP=6630.35;SAR=3055;SRF=9109;SRP=3.01459;SRR=9115;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:136:135,0:135:4750:0:0:0,-40.639,-427.408	0/1:316:192,124:192:6799:124:4380:-299.251,0,-516.808	0/0:537:537,0:537:18915:0:0:0,-161.653,-1701.57	0/0:600:598,2:598:20996:2:72:0,-173.781,-1882.25	0/0:265:263,2:263:9340:2:64:0,-73.6943,-834.09	0/0:238:238,0:238:8437:0:0:0,-71.6451,-758.769	0/1:365:248,117:248:8759:117:4126:-261.651,0,-678.416	0/0:408:408,0:408:14400:0:0:0,-122.82,-1295.69	0/1:212:134,78:134:4721:78:2728:-181.944,0,-360.858	0/0:182:182,0:182:6437:0:0:0,-54.7875,-579.412	0/0:156:156,0:156:5537:0:0:0,-46.9607,-498.423	0/0:173:173,0:173:6039:0:0:0,-52.0782,-543.587	0/1:122:76,46:76:2708:46:1623:-109.633,0,-207.212	0/0:166:166,0:166:5853:0:0:0,-49.971,-526.658	0/1:96:63,33:63:2207:33:1172:-76.8886,0,-169.97	0/0:120:119,0:119:4175:0:0:0,-35.8226,-375.554	0/0:180:180,0:180:6380:0:0:0,-54.1854,-574.237	0/1:88:50,38:50:1765:38:1347:-95.0388,0,-132.641	0/1:82:61,21:61:2159:21:740:-42.2389,0,-168.925	0/1:435:294,141:294:10405:141:5048:-323.517,0,-805.395	0/1:283:186,97:186:6530:97:3420:-222.824,0,-502.482	0/1:143:74,69:74:2612:69:2460:-178.608,0,-192.236	0/0:146:146,0:146:5173:0:0:0,-43.9504,-465.678	0/0:331:323,8:323:11394:8:260:0,-75.9247,-1001.19	0/0:229:229,0:229:8048:0:0:0,-68.9359,-724.113	0/1:678:486,192:486:17123:192:6821:-409.865,0,-1336.08	0/1:402:268,134:268:9513:134:4691:-301.341,0,-735.091	0/0:74:74,0:74:2609:0:0:0,-22.2762,-235.056	0/0:796:796,0:796:28072:0:0:0,-239.62,-2525.66	0/0:292:292,0:292:10370:0:0:0,-87.9008,-933.18	0/0:307:307,0:307:10771:0:0:0,-92.4162,-968.943	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:47:47,0:47:1659:0:0:0,-14.1484,-149.597	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1355	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1065	0/1:359:236,123:236:8352:123:4299:-279.023,0,-643.61	0/1:295:193,102:193:6778:102:3629:-238.011,0,-521.286	0/1:128:94,34:94:3311:34:1208:-70.4942,0,-259.668	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:320:192,128:192:6774:128:4436:-303.083,0,-513.157	0/0:88:88,0:88:3101:0:0:0,-26.4906,-279.312	0/0:481:479,2:479:16883:2:72:0,-137.959,-1511.57	0/0:171:171,0:171:6014:0:0:0,-51.4761,-541.352	0/0:120:120,0:120:4110:0:0:0,-36.1236,-369.956	0/0:182:182,0:182:6453:0:0:0,-54.7875,-580.843	0/0:256:255,1:255:8996:1:36:0,-73.4654,-806.001	0/1:322:214,108:214:7539:108:3809:-246.079,0,-581.539	0/1:270:156,114:156:5549:114:4050:-283.412,0,-418.162	0/1:318:216,102:216:7625:102:3605:-228.929,0,-590.566	0/0:468:468,0:468:16533:0:0:0,-140.882,-1487.65	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6883	0/0:335:335,0:335:11810:0:0:0,-100.845,-1061.75	0/0:138:138,0:138:4904:0:0:0,-41.5421,-441.499	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:343:343,0:343:12012:0:0:0,-103.253,-1080.76	0/0:132:132,0:132:4649:0:0:0,-39.736,-418.557	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/1:48:29,19:29:1018:19:676:-46.7186,0,-77.48	0/0:251:251,0:251:8892:0:0:0,-75.5585,-800.215	0/0:282:282,0:282:9933:0:0:0,-84.8905,-893.839	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7556	0/0:441:441,0:441:15498:0:0:0,-132.754,-1394.42	0/0:627:627,0:627:22158:0:0:0,-188.746,-1993.54	0/1:189:139,50:139:4899:50:1778:-103.407,0,-384.167	0/0:230:229,0:229:8056:0:0:0,-68.9359,-724.696	0/0:430:427,2:427:15098:2:72:0,-122.665,-1351.63	0/0:413:410,3:410:14472:3:108:0,-114.25,-1290.19	0/0:61:61,0:61:2166:0:0:0,-18.3628,-195.205	0/0:212:212,0:212:7455:0:0:0,-63.8184,-670.94	0/1:164:102,62:102:3586:62:2153:-144.665,0,-273.56	0/0:77:76,1:76:2673:1:36:0,-19.581,-237.211	0/1:258:174,84:174:6062:84:2926:-185.909,0,-467.94	0/1:126:78,48:78:2766:48:1704:-115.715,0,-211.252	0/1:413:271,142:271:9472:142:5039:-329.33,0,-727.967	0/1:320:194,126:194:6868:126:4466:-305.78,0,-521.857	0/1:216:146,70:146:5168:70:2475:-157.982,0,-399.976	0/1:203:128,75:128:4482:75:2661:-178.628,0,-342.425	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.0998	0/0:294:294,0:294:10368:0:0:0,-88.5028,-932.806	0/1:169:114,55:114:3990:55:1927:-122.83,0,-308.334	0/1:539:361,178:361:12748:178:6275:-402.596,0,-984.244	0/1:188:136,52:136:4757:52:1819:-107.394,0,-371.562	0/1:74:50,24:50:1760:24:839:-53.551,0,-136.398	0/1:114:73,41:73:2560:41:1443:-95.8458,0,-196.328	0/1:199:135,64:135:4719:64:2259:-143.665,0,-364.966	0/1:80:50,30:50:1748:30:1057:-71.3579,0,-133.515	0/0:158:158,0:158:5536:0:0:0,-47.5627,-498.344	0/0:154:154,0:154:5401:0:0:0,-46.3586,-486.179	0/0:101:101,0:101:3583:0:0:0,-30.404,-322.671	0/1:165:104,61:104:3659:61:2140:-143.196,0,-279.801	0/1:94:47,47:47:1654:47:1657:-121.119,0,-120.847	0/0:254:254,0:254:8837:0:0:0,-76.4616,-795.298	0/0:228:226,0:226:7990:0:0:0,-68.0328,-718.751
chr01	16162766	.	C	T	52443	PASS	AB=0.508162;ABP=6.59058;AC=39;AF=0.207447;AN=188;AO=3164;CIGAR=1X;DP=12586;DPB=12586;DPRA=1.5988;EPP=6873.55;EPPR=20445.3;GTI=3;LEN=1;MEANALT=1.08511;MQM=59.9934;MQMR=59.993;NS=94;NUMALT=1;ODDS=0.568132;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112048;QR=332764;RO=9414;RPL=3164;RPP=6873.55;RPPR=20445.3;RPR=0;RUN=1;SAF=0;SAP=6873.55;SAR=3164;SRF=0;SRP=20445.3;SRR=9414;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:75:74,0:74:2573:0:0:0,-22.2762,-231.602	0/1:237:111,126:111:3950:126:4505:-334.273,0,-284.346	0/0:150:149,0:149:5240:0:0:0,-44.8535,-471.373	0/0:313:311,2:311:10952:2:72:0,-87.3857,-978.745	0/0:119:117,2:117:4170:2:72:0,-28.9858,-368.644	0/0:125:125,0:125:4457:0:0:0,-37.6287,-401.3	0/1:239:120,119:120:4263:119:4211:-307.224,0,-311.9	0/0:293:292,0:292:10264:0:0:0,-87.9008,-923.481	0/1:153:67,86:67:2347:86:3069:-230.38,0,-165.428	0/0:128:128,0:128:4502:0:0:0,-38.5318,-405.343	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/0:90:90,0:90:3148:0:0:0,-27.0927,-283.543	0/1:84:37,47:37:1328:47:1673:-125.569,0,-94.5357	0/0:85:85,0:85:2992:0:0:0,-25.5875,-269.508	0/1:78:43,34:43:1548:34:1220:-86.6647,0,-116.172	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:65:65,0:65:2313:0:0:0,-19.5669,-208.429	0/1:69:29,40:29:1021:40:1413:-106.694,0,-71.4292	0/1:50:29,21:29:1040:21:748:-52.5938,0,-78.8629	0/1:302:157,145:157:5580:145:5160:-373.634,0,-411.409	0/1:171:70,101:70:2448:101:3589:-271.741,0,-169.094	0/1:104:31,73:31:1093:73:2559:-199.249,0,-67.3705	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.491	0/0:195:187,8:187:6677:8:284:0,-32.7975,-574.835	0/0:119:119,0:119:4229:0:0:0,-35.8226,-380.789	0/1:491:291,200:291:10198:200:7119:-492.963,0,-769.95	0/1:296:157,138:157:5551:138:4889:-351.122,0,-410.67	0/0:44:44,0:44:1531:0:0:0,-13.2453,-138.076	0/0:416:416,0:416:14734:0:0:0,-125.228,-1325.8	0/0:143:142,0:142:5002:0:0:0,-42.7463,-450.114	0/0:120:120,0:120:4232:0:0:0,-36.1236,-381.059	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2163	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:18:18,0:18:625:0:0:0,-5.41854,-56.5725	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:264:138,126:138:4914:126:4481:-323.989,0,-362.938	0/1:215:110,105:110:3906:105:3726:-270.819,0,-287.011	0/1:89:54,35:54:1925:35:1260:-86.9138,0,-146.733	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:231:99,132:99:3510:132:4644:-348.584,0,-246.571	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:246:245,1:245:8713:1:21:0,-71.9534,-782.06	0/0:84:84,0:84:2946:0:0:0,-25.2865,-265.374	0/0:65:65,0:65:2241:0:0:0,-19.5669,-201.947	0/0:81:81,0:81:2829:0:0:0,-24.3834,-254.844	0/0:149:148,1:148:5203:1:36:0,-41.2552,-464.809	0/1:213:98,115:98:3475:115:4051:-300.659,0,-248.839	0/1:219:101,118:101:3583:118:4128:-305.78,0,-256.619	0/1:189:84,105:84:2978:105:3700:-276.305,0,-211.356	0/0:270:270,0:270:9535:0:0:0,-81.2781,-858.105	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/0:197:197,0:197:7001:0:0:0,-59.3029,-630.151	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.484	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:164:164,0:164:5688:0:0:0,-49.3689,-512.039	0/0:60:60,0:60:2118:0:0:0,-18.0618,-190.885	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:39:20,19:20:716:19:684:-50.1502,0,-53.0275	0/0:93:93,0:93:3291:0:0:0,-27.9958,-296.407	0/0:138:138,0:138:4903:0:0:0,-41.5421,-441.42	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:238:238,0:238:8436:0:0:0,-71.6451,-759.245	0/0:316:316,0:316:11060:0:0:0,-95.1255,-995.273	0/1:129:76,53:76:2717:53:1862:-129.023,0,-205.939	0/0:98:98,0:98:3467:0:0:0,-29.5009,-312.24	0/0:202:200,2:200:7059:2:72:0,-53.9713,-628.534	0/0:284:280,3:280:9840:3:104:0,-75.717,-875.882	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:94:94,0:94:3342:0:0:0,-28.2968,-300.995	0/1:123:62,61:62:2228:61:2165:-158.089,0,-163.757	0/0:48:47,1:47:1665:1:36:0,-10.8512,-146.537	0/1:180:94,86:94:3308:86:3064:-221.796,0,-243.75	0/1:96:45,51:45:1616:51:1768:-130.499,0,-116.831	0/1:288:135,153:135:4781:153:5392:-398.713,0,-343.746	0/1:224:94,130:94:3353:130:4545:-341.788,0,-234.555	0/1:129:56,73:56:1955:73:2605:-195.864,0,-137.387	0/1:152:77,75:77:2673:75:2624:-190.646,0,-195.054	0/0:10:10,0:10:337:0:0:0,-3.0103,-30.6547	0/0:167:167,0:167:5938:0:0:0,-50.272,-534.529	0/1:100:46,54:46:1614:54:1901:-141.263,0,-115.442	0/1:381:193,187:193:6755:187:6587:-478.251,0,-493.362	0/1:120:69,51:69:2476:51:1824:-128.318,0,-186.97	0/1:48:23,25:23:828:25:888:-65.7896,0,-60.3947	0/1:82:39,43:39:1400:43:1544:-114.569,0,-101.615	0/1:137:71,66:71:2525:66:2360:-171.418,0,-186.259	0/1:59:28,31:28:978:31:1101:-81.6385,0,-70.5679	0/0:87:87,0:87:3097:0:0:0,-26.1896,-278.957	0/0:95:95,0:95:3378:0:0:0,-28.5978,-304.234	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692	0/1:118:54,64:54:1909:64:2292:-171.02,0,-136.564	0/1:75:25,50:25:885:50:1784:-138.265,0,-57.3893	0/0:91:91,0:91:3185:0:0:0,-27.3937,-286.87	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.472
chr01	16170708	.	A	G	83501.9	PASS	AB=0.497;ABP=3.23182;AC=146;AF=0.793478;AN=184;AO=4071;CIGAR=1X;DP=5507;DPB=5507;DPRA=0;EPP=8834.39;EPPR=3119.07;GTI=3;LEN=1;MEANALT=1.01087;MQM=59.9609;MQMR=59.9944;NS=92;NUMALT=1;ODDS=1.02365;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143860;QR=50785;RO=1435;RPL=1;RPP=8834.39;RPPR=3119.07;RPR=4070;RUN=1;SAF=0;SAP=8843.07;SAR=4071;SRF=0;SRP=3119.07;SRR=1435;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:1,18:1:36:18:629:-53.3355,-2.1213,0	0/1:107:44,63:44:1576:63:2235:-169.204,0,-109.921	1/1:124:0,124:0:0:124:4391:-395.352,-37.3277,0	1/1:97:0,97:0:0:97:3442:-309.504,-29.1999,0	1/1:64:0,64:0:0:64:2283:-205.731,-19.2659,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:64:26,38:26:919:38:1364:-103.795,0,-63.7602	1/1:90:0,90:0:0:90:3186:-286.963,-27.0927,0	0/1:54:25,29:25:892:29:1031:-76.847,0,-64.3441	1/1:49:0,49:0:0:49:1733:-156.253,-14.7505,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:47:0,47:0:0:47:1644:-148.244,-14.1484,0	0/1:54:34,20:34:1211:20:696:-46.704,0,-93.0399	1/1:41:0,41:0:0:41:1410:-127.188,-12.3422,0	0/1:48:22,26:22:788:26:932:-69.7494,0,-56.7954	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	0/1:37:14,23:14:496:23:820:-62.9844,0,-33.8362	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/1:89:45,44:45:1593:44:1563:-114.169,0,-116.867	0/1:64:30,34:30:1050:34:1191:-88.2284,0,-75.5429	0/1:76:57,19:57:2020:19:667:-37.4763,0,-159.192	1/1:37:0,37:0:0:37:1315:-118.65,-11.1381,0	1/1:55:4,51:4:144:51:1801:-149.057,-3.24303,0	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	0/1:235:116,119:116:4144:119:4206:-307.979,0,-302.4	0/1:158:84,74:84:2962:74:2614:-187.943,0,-219.252	1/1:24:0,24:0:0:24:832:-75.194,-7.22472,0	1/1:148:0,148:0:0:148:5210:-469.044,-44.5524,0	1/1:53:2,51:2:72:51:1806:-155.981,-9.11787,0	1/1:45:0,45:0:0:45:1593:-143.658,-13.5464,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:119:56,63:56:1948:63:2144:-157.398,0,-139.769	0/1:158:77,81:77:2743:81:2864:-210.434,0,-199.55	0/1:36:14,22:14:483:22:780:-59.686,0,-32.9602	.:.:.:.:.:.:.:.	0/1:81:31,50:31:1104:50:1760:-134.297,0,-75.2872	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:86:0,86:0:0:86:3045:-274.28,-25.8886,0	1/1:44:0,44:0:0:44:1567:-141.321,-13.2453,0	1/1:45:0,45:0:0:45:1551:-139.877,-13.5464,0	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	1/1:85:0,85:0:0:85:2990:-269.332,-25.5876,0	0/1:184:94,90:94:3329:90:3180:-231.027,0,-244.439	0/1:82:42,40:42:1473:40:1436:-104.853,0,-108.173	0/1:84:39,44:39:1392:44:1559:-115.254,0,-100.234	1/1:77:0,77:0:0:77:2746:-247.345,-23.1793,0	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	1/1:82:0,82:0:0:82:2911:-262.224,-24.6845,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:118:0,118:0:0:118:4120:-370.987,-35.5215,0	1/1:12:0,12:0:0:12:420:-38.134,-3.61236,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:18:0,18:0:0:18:625:-56.5725,-5.41854,0	1/1:72:0,72:0:0:72:2543:-229.122,-21.6742,0	.:.:.:.:.:.:.:.	1/1:169:0,169:0:0:169:5991:-539.297,-50.8741,0	1/1:103:0,103:0:0:103:3656:-329.244,-31.0061,0	0/1:48:24,24:24:845:24:849:-62.2784,0,-61.9177	1/1:90:0,90:0:0:90:3172:-285.707,-27.0927,0	1/1:97:0,97:0:0:97:3436:-309.452,-29.1999,0	1/1:45:4,41:4:144:41:1476:-119.823,-0.232733,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:61:0,61:0:0:61:2166:-195.205,-18.3628,0	0/1:61:28,33:28:992:33:1149:-85.3508,0,-71.2316	1/1:13:0,13:0:0:13:462:-41.9162,-3.91339,0	0/1:64:38,26:38:1342:26:906:-62.5875,0,-101.813	0/1:48:30,18:30:1042:18:640:-43.4799,0,-79.636	0/1:44:24,20:24:852:20:684:-48.6309,0,-63.7551	0/1:98:48,50:48:1712:50:1782:-131.161,0,-124.865	0/1:104:60,44:60:2116:44:1572:-110.464,0,-159.4	0/1:69:31,38:31:1101:38:1352:-101.209,0,-78.6273	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:94:0,94:0:0:94:3331:-300.006,-28.2968,0	0/1:72:38,34:38:1351:34:1207:-87.2611,0,-100.215	0/1:115:50,65:50:1767:65:2307:-173.272,0,-124.694	0/1:73:29,44:29:1021:44:1580:-120.516,0,-70.2251	0/1:40:22,18:22:784:18:635:-45.4358,0,-58.8404	0/1:45:21,24:21:728:24:839:-61.6474,0,-52.2914	0/1:82:59,23:59:2063:23:801:-47.7222,0,-161.254	0/1:19:12,7:12:424:7:232:-15.4833,0,-32.7768	1/1:37:0,37:0:0:37:1286:-116.039,-11.1381,0	1/1:45:0,45:0:0:45:1573:-141.858,-13.5464,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	0/1:51:25,26:25:874:26:905:-66.4103,0,-63.6227	0/1:41:24,17:24:856:17:590:-41.0819,0,-65.0189	1/1:31:0,31:0:0:31:1095:-98.8597,-9.33193,0	1/1:68:0,68:0:0:68:2419:-217.966,-20.47,0
chr01	16207717	.	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chr01	16237859	.	C	T	184282	PASS	AB=0.480617;ABP=21.1927;AC=148;AF=0.787234;AN=188;AO=8710;CIGAR=1X;DP=11634;DPB=11634;DPRA=0;EPP=18803.8;EPPR=6291.67;GTI=2;LEN=1;MEANALT=1.07447;MQM=59.6909;MQMR=59.9609;NS=94;NUMALT=1;ODDS=0.732139;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=311263;QR=103568;RO=2916;RPL=14;RPP=18795.1;RPPR=6274.37;RPR=8696;RUN=1;SAF=1;SAP=18907.9;SAR=8709;SRF=2;SRP=6317.66;SRR=2914;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:1,53:1:36:53:1892:-166.95,-12.6573,0	0/1:347:204,143:204:7266:143:5089:-353.612,0,-549.534	1/1:126:3,122:3:108:122:4343:-380.723,-27.9134,0	1/1:174:0,174:0:0:174:6221:-559.939,-52.3792,0	1/1:57:0,57:0:0:57:2027:-181.473,-17.1587,0	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	0/1:248:116,132:116:4122:132:4716:-349.905,0,-296.511	1/1:165:0,165:0:0:165:5887:-529.698,-49.67,0	0/1:116:63,53:63:2240:53:1896:-135.987,0,-166.927	1/1:158:0,158:0:0:158:5636:-507.319,-47.5627,0	1/1:117:1,116:1:36:116:4137:-368.908,-31.6222,0	1/1:120:0,120:0:0:120:4303:-387.396,-36.1236,0	0/1:89:54,35:54:1914:35:1252:-86.182,0,-145.744	1/1:110:1,109:1:27:109:3908:-349.168,-30.4135,0	0/1:81:35,46:35:1241:46:1648:-124.22,0,-87.6091	1/1:73:0,73:0:0:73:2616:-235.669,-21.9752,0	1/1:106:0,106:0:0:106:3800:-342.181,-31.9092,0	0/1:62:28,34:28:1008:34:1220:-91.4348,0,-72.3725	0/1:60:33,27:33:1169:27:972:-69.7279,0,-87.4535	0/1:292:133,158:133:4772:158:5640:-419.748,0,-341.676	0/1:225:114,111:114:4049:111:3947:-287.643,0,-296.867	0/1:131:84,47:84:2982:47:1683:-112.302,0,-229.144	1/1:154:1,153:1:36:153:5460:-487.912,-42.7603,0	1/1:183:5,178:5:180:178:6349:-554.93,-38.5364,0	1/1:106:0,106:0:0:106:3788:-341.096,-31.9092,0	0/1:360:184,174:184:6555:174:6230:-452.654,0,-481.907	0/1:172:79,93:79:2824:93:3336:-248.66,0,-202.622	1/1:51:0,51:0:0:51:1818:-163.885,-15.3525,0	1/1:293:0,293:0:0:293:10493:-944.235,-88.2018,0	1/1:331:1,329:1:36:329:11707:-1049.8,-96.1015,0	1/1:229:0,229:0:0:229:8154:-733.861,-68.9359,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	1/1:19:0,19:0:0:19:659:-59.6323,-5.71957,0	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:227:122,105:122:4309:105:3760:-270.262,0,-319.654	0/1:226:131,95:131:4674:95:3416:-239.597,0,-352.789	0/1:77:39,38:39:1330:38:1360:-99.5098,0,-96.8115	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:147:90,57:90:3197:57:2048:-140.317,0,-243.702	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:157:1,156:1:32:156:5567:-497.994,-44.1256,0	1/1:128:0,128:0:0:128:4554:-409.93,-38.5318,0	1/1:71:0,71:0:0:71:2548:-229.555,-21.3731,0	1/1:154:0,154:0:0:154:5513:-496.132,-46.3586,0	1/1:99:0,99:0:0:99:3547:-319.382,-29.802,0	0/1:106:56,50:56:1974:50:1796:-130.011,0,-146.025	0/1:152:66,85:66:2325:85:3031:-227.203,0,-163.693	0/1:173:78,95:78:2771:95:3396:-253.77,0,-197.525	1/1:243:0,243:0:0:243:8712:-784.063,-73.1503,0	1/1:17:0,17:0:0:17:608:-54.9218,-5.11751,0	1/1:192:0,192:0:0:192:6875:-618.768,-57.7978,0	1/1:55:1,54:1:36:54:1922:-169.57,-12.9584,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:142:0,142:0:0:142:5088:-457.886,-42.7463,0	1/1:94:0,94:0:0:94:3341:-300.903,-28.2968,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:23:16,7:16:572:7:248:-15.7405,0,-44.8897	1/1:85:1,84:1:36:84:3012:-267.706,-21.9893,0	1/1:162:1,161:1:36:161:5784:-517.052,-45.1686,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:162:0,161:0:0:161:5755:-517.833,-48.4658,0	1/1:249:3,246:3:108:246:8750:-777.394,-64.8813,0	0/1:121:72,49:72:2549:49:1752:-121.517,0,-193.235	1/1:73:1,72:1:36:72:2576:-227.464,-18.3769,0	1/1:215:2,213:2:72:213:7574:-674.632,-57.8847,0	1/1:216:2,214:2:72:214:7667:-683.215,-58.1858,0	1/1:52:0,52:0:0:52:1872:-168.731,-15.6536,0	1/1:69:0,69:0:0:69:2449:-220.629,-20.7711,0	0/1:83:46,37:46:1652:37:1332:-95.1942,0,-123.983	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:137:76,61:76:2704:61:2169:-154.196,0,-202.364	0/1:62:31,31:31:1099:31:1112:-81.7111,0,-80.5556	0/1:255:117,138:117:4183:138:4924:-366.404,0,-299.889	0/1:164:94,70:94:3359:70:2510:-176.754,0,-253.157	0/1:107:55,52:55:1959:52:1840:-133.66,0,-144.373	0/1:91:48,43:48:1694:43:1532:-110.762,0,-125.351	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	1/1:120:0,120:0:0:120:4288:-386.063,-36.1236,0	0/1:98:42,56:42:1499:56:2016:-152.211,0,-105.703	0/1:326:178,148:178:6315:148:5324:-381.143,0,-470.31	0/1:148:86,62:86:3064:62:2224:-155.781,0,-231.435	0/1:93:48,45:48:1653:45:1620:-118.075,0,-121.054	0/1:98:44,54:44:1563:54:1936:-144.969,0,-111.46	0/1:171:71,100:71:2498:100:3581:-271,0,-173.579	0/1:60:28,32:28:981:32:1148:-85.5599,0,-70.5392	1/1:93:0,93:0:0:93:3331:-299.988,-27.9958,0	1/1:85:1,84:1:36:84:3012:-267.426,-21.9893,0	1/1:89:0,89:0:0:89:3174:-285.863,-26.7917,0	0/1:151:67,83:67:2360:83:2948:-220.028,0,-167.183	0/1:80:55,25:55:1967:25:887:-56.0634,0,-153.222	1/1:93:0,93:0:0:93:3332:-300.089,-27.9958,0	1/1:125:1,124:1:36:124:4409:-393.351,-34.0305,0
chr01	16258346	.	G	A	402999	PASS	AB=0.555568;ABP=233.723;AC=148;AF=0.795699;AN=186;AO=15399;CIGAR=1X;DP=19258;DPB=19258;DPRA=0;EPP=33285.4;EPPR=8380.55;GTI=0;LEN=1;MEANALT=1.01075;MQM=49.4485;MQMR=46.5218;NS=93;NUMALT=1;ODDS=8.42872;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=541586;QR=136636;RO=3858;RPL=8159;RPP=122.105;RPPR=47.7703;RPR=7240;RUN=1;SAF=8143;SAP=113.956;SAR=7256;SRF=2070;SRP=47.7703;SRR=1788;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:143:1,142:1:36:142:4933:-424.903,-39.4581,0	0/1:253:123,130:123:4404:130:4559:-317.495,0,-304.483	1/1:337:0,337:0:0:337:11803:-1034.42,-101.447,0	1/1:500:0,500:0:0:500:17698:-1565.45,-150.515,0	1/1:90:0,90:0:0:90:3171:-280.353,-27.0927,0	1/1:94:2,92:2:57:92:3255:-273.354,-22.9023,0	0/1:163:67,96:67:2368:96:3397:-251.278,0,-159.134	1/1:433:3,430:3:99:430:15186:-1297.48,-121.127,0	0/1:206:82,124:82:2895:124:4274:-312.883,0,-188.278	1/1:292:0,292:0:0:292:10278:-906.094,-87.9008,0	1/1:129:0,129:0:0:129:4521:-399.459,-38.8329,0	1/1:232:0,232:0:0:232:8029:-698.43,-69.839,0	0/1:235:110,125:110:3911:125:4346:-310.142,0,-269.926	1/1:183:0,183:0:0:183:6360:-558.538,-55.0885,0	0/1:220:95,125:95:3377:125:4395:-320.627,0,-231.071	1/1:140:0,140:0:0:140:4962:-437.27,-42.1442,0	1/1:147:2,145:2:59:145:5098:-433.16,-38.6484,0	0/1:180:101,79:101:3583:79:2784:-186.585,0,-253.809	0/1:79:41,38:41:1448:38:1335:-93.6804,0,-100.897	0/1:379:179,200:179:6351:200:7037:-507.884,0,-443.697	0/1:389:145,244:145:5145:244:8542:-631.168,0,-336.363	0/1:111:47,64:47:1675:64:2265:-169.447,0,-115.63	1/1:215:0,215:0:0:215:7595:-672.182,-64.7215,0	1/1:233:8,225:8:284:225:7978:-667.473,-45.1569,0	1/1:231:0,231:0:0:231:8076:-709.918,-69.5379,0	0/1:526:181,345:181:6459:345:12280:-930.294,0,-413.134	0/1:514:193,321:193:6789:321:11195:-829.464,0,-439.78	1/1:102:0,102:0:0:102:3595:-313.828,-30.7051,0	1/1:710:2,708:2:72:708:24907:-2208.52,-206.954,0	1/1:190:0,190:0:0:190:6728:-589.28,-57.1957,0	1/1:226:0,226:0:0:226:7976:-706.832,-68.0328,0	1/1:8:0,8:0:0:8:288:-25.4802,-2.40824,0	1/1:11:0,11:0:0:11:384:-34.89,-3.31133,0	0/1:5:3,2:3:108:2:64:-4.57009,0,-7.2065	1/1:9:0,9:0:0:9:316:-28.395,-2.70927,0	1/1:10:0,10:0:0:10:347:-30.9885,-3.0103,0	0/1:472:240,232:240:8506:232:8171:-586.138,0,-612.186	0/1:204:54,150:54:1916:150:5300:-400.799,0,-106.308	0/1:130:57,73:57:2044:73:2559:-182.074,0,-135.371	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:235:119,116:119:4212:116:4101:-288.92,0,-300.078	1/1:77:0,77:0:0:77:2694:-236.76,-23.1793,0	1/1:342:0,342:0:0:342:11992:-1052.48,-102.952,0	1/1:197:0,197:0:0:197:6982:-613.114,-59.3029,0	1/1:204:0,204:0:0:204:7225:-639.076,-61.4101,0	1/1:282:0,282:0:0:282:9830:-875.474,-84.8905,0	1/1:259:1,258:1:36:258:9096:-781.655,-74.3685,0	0/1:236:104,132:104:3671:132:4657:-338.435,0,-254.449	0/1:224:96,128:96:3382:128:4479:-327.61,0,-233.854	0/1:298:158,140:158:5605:140:4966:-348.134,0,-405.835	1/1:271:0,271:0:0:271:9523:-849.733,-81.5791,0	1/1:1:0,1:0:0:1:32:-3.15863,-0.30103,0	1/1:254:0,254:0:0:254:8943:-782.655,-76.4616,0	1/1:110:0,110:0:0:110:3864:-344.693,-33.1133,0	1/1:11:0,11:0:0:11:383:-34.4192,-3.31133,0	1/1:321:0,321:0:0:321:11262:-992.664,-96.6306,0	1/1:128:0,128:0:0:128:4530:-397.236,-38.5318,0	.:.:.:.:.:.:.:.	0/1:18:8,10:8:288:10:344:-25.6803,0,-20.5625	1/1:208:0,208:0:0:208:7361:-646.193,-62.6142,0	1/1:221:6,215:6:208:215:7607:-653.901,-47.7799,0	1/1:6:0,6:0:0:6:216:-19.6153,-1.80618,0	1/1:329:0,329:0:0:329:11620:-1034.48,-99.0389,0	1/1:407:0,407:0:0:407:14313:-1263.81,-122.519,0	0/1:148:63,85:63:2212:85:2976:-216.516,0,-151.338	1/1:191:0,191:0:0:191:6734:-596.25,-57.4967,0	1/1:393:5,387:5:180:387:13638:-1189.85,-101.896,0	1/1:247:4,243:4:135:243:8576:-748.344,-62.5203,0	1/1:46:0,46:0:0:46:1613:-143.774,-13.8474,0	1/1:144:0,144:0:0:144:5063:-437.189,-43.3483,0	0/1:160:87,73:87:3038:73:2598:-183.329,0,-221.628	1/1:47:0,47:0:0:47:1667:-148.223,-14.1484,0	0/1:134:63,71:63:2229:71:2389:-171.605,0,-155.201	0/1:192:107,85:107:3822:85:2956:-200.228,0,-274.595	0/1:241:67,174:67:2368:174:6127:-464.927,0,-133.22	0/1:284:137,147:137:4874:147:5173:-374.17,0,-345.402	0/1:128:25,103:25:896:103:3667:-278.102,0,-39.64	0/1:313:143,170:143:5065:170:6030:-425.984,0,-342.452	1/1:11:0,11:0:0:11:384:-34.1262,-3.31133,0	1/1:212:1,211:1:36:211:7386:-644.885,-60.3639,0	0/1:188:76,112:76:2656:112:3913:-286.001,0,-176.069	0/1:362:158,204:158:5614:204:7186:-526.547,0,-386.069	0/1:177:84,93:84:2961:93:3275:-236.05,0,-208.907	0/1:213:115,98:115:4076:98:3434:-239.276,0,-296.433	0/1:232:110,122:110:3893:122:4303:-309.114,0,-273.072	0/1:325:139,186:139:4915:186:6561:-478.798,0,-335.406	0/1:70:41,29:41:1435:29:1040:-68.8601,0,-103	1/1:185:0,185:0:0:185:6502:-562.473,-55.6906,0	1/1:178:0,178:0:0:178:6188:-541.93,-53.5833,0	1/1:93:0,93:0:0:93:3220:-284.567,-27.9958,0	0/1:148:71,77:71:2510:77:2693:-194.22,0,-176.076	0/1:210:134,76:134:4733:76:2676:-172.878,0,-354.113	1/1:282:0,282:0:0:282:9860:-874.835,-84.8905,0	1/1:333:0,333:0:0:333:11715:-1036.32,-100.243,0
chr01	16258378	.	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chr01	16258447	.	A	T	17737.5	PASS	AB=0.46421;ABP=29.2786;AC=37;AF=0.196809;AN=188;AO=1109;CIGAR=1X;DP=5189;DPB=5189;DPRA=1.63707;EPP=2411.17;EPPR=8860.45;GTI=0;LEN=1;MEANALT=1.02326;MQM=55.3715;MQMR=50.3251;NS=94;NUMALT=1;ODDS=3.82233;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39694;QR=144976;RO=4079;RPL=1109;RPP=2411.17;RPPR=8860.45;RPR=0;RUN=1;SAF=1109;SAP=2411.17;SAR=0;SRF=4079;SRP=8860.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.4482	0/1:53:30,23:30:1080:23:820:-58.0948,0,-81.018	0/0:42:42,0:42:1508:0:0:0,-12.6433,-134.906	0/0:122:122,0:122:4339:0:0:0,-36.7257,-387.464	0/0:16:16,0:16:572:0:0:0,-4.81648,-46.7836	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.4153	0/1:43:21,22:21:741:22:792:-58.6097,0,-53.6667	0/0:48:48,0:48:1694:0:0:0,-14.4494,-147.883	0/1:40:26,14:26:936:14:495:-32.6944,0,-67.9186	0/0:67:67,0:67:2366:0:0:0,-20.169,-211.303	0/0:37:37,0:37:1275:0:0:0,-11.1381,-113.528	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.506	0/1:58:17,41:17:612:41:1472:-114.875,0,-37.1389	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.286	0/1:35:15,20:15:536:20:699:-52.649,0,-37.6842	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.331	0/0:32:32,0:32:1144:0:0:0,-9.63296,-102.729	0/1:32:24,8:24:845:8:288:-16.5035,0,-64.6187	0/1:11:4,7:4:144:7:252:-19.5898,0,-9.72548	0/1:41:27,14:27:964:14:504:-32.6943,0,-72.7221	0/1:103:53,50:53:1900:50:1800:-130.992,0,-135.331	0/1:25:12,13:12:417:13:464:-34.559,0,-29.6944	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.161	0/0:16:16,0:16:576:0:0:0,-4.81648,-50.9379	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.6612	0/1:127:62,65:62:2160:65:2315:-169.939,0,-154.598	0/1:104:55,48:55:1941:48:1697:-120.943,0,-137.058	0/0:16:16,0:16:572:0:0:0,-4.81648,-50.2963	0/0:150:150,0:150:5297:0:0:0,-45.1545,-472.21	0/0:63:63,0:63:2211:0:0:0,-18.9649,-198.036	0/0:32:32,0:32:1133:0:0:0,-9.63296,-101.937	0/0:40:40,0:40:1421:0:0:0,-12.0412,-112.796	0/0:49:49,0:49:1730:0:0:0,-14.7505,-142.708	0/0:112:110,2:110:3944:2:68:0,-27.2626,-318.33	0/0:28:28,0:28:1000:0:0:0,-8.42884,-83.2377	0/0:49:49,0:49:1745:0:0:0,-14.7505,-146.932	0/1:137:74,63:74:2652:63:2264:-162.543,0,-194.721	0/1:36:28,8:28:1004:8:288:-15.3265,0,-78.3261	0/1:37:25,12:25:900:12:424:-27.3219,0,-67.4777	0/0:15:15,0:15:521:0:0:0,-4.51545,-42.1652	0/1:63:29,34:29:1044:34:1212:-90.0941,0,-73.7406	0/0:17:17,0:17:612:0:0:0,-5.11751,-54.6694	0/0:27:27,0:27:957:0:0:0,-8.12781,-83.475	0/0:33:33,0:33:1158:0:0:0,-9.93399,-102.904	0/0:23:23,0:23:798:0:0:0,-6.92369,-71.7349	0/0:36:36,0:36:1258:0:0:0,-10.8371,-111.406	0/0:30:30,0:30:1080:0:0:0,-9.0309,-95.7766	0/1:87:54,33:54:1932:33:1184:-80.5196,0,-140.86	0/1:44:29,15:29:1025:15:536:-35.2074,0,-78.2014	0/1:139:69,70:69:2468:70:2491:-182.402,0,-175.871	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.147	0/0:94:94,0:94:3346:0:0:0,-28.2968,-277.668	0/0:46:46,0:46:1644:0:0:0,-13.8474,-140.997	0/0:27:27,0:27:938:0:0:0,-8.12781,-83.0461	0/0:26:26,0:26:901:0:0:0,-7.82678,-78.8443	0/0:74:74,0:74:2629:0:0:0,-22.2762,-234.046	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.34405	0/0:70:70,0:70:2501:0:0:0,-21.0721,-218.74	0/1:61:36,25:36:1281:25:896:-62.5542,0,-91.8958	0/0:34:34,0:34:1220:0:0:0,-10.235,-107.981	0/0:72:72,0:72:2565:0:0:0,-21.6742,-228.714	0/0:35:35,0:35:1192:0:0:0,-10.536,-99.5186	0/0:207:206,1:206:7321:1:36:0,-58.8896,-649.249	0/0:102:101,1:101:3556:1:36:0,-27.1094,-308.74	0/1:60:25,35:25:877:35:1256:-95.2067,0,-60.7537	0/0:35:35,0:35:1256:0:0:0,-10.536,-109.866	0/0:79:75,4:75:2700:4:144:0,-10.4774,-226.645	0/0:66:65,1:65:2272:1:36:0,-16.2723,-197.874	0/0:31:31,0:31:1116:0:0:0,-9.33193,-99.1478	0/0:25:25,0:25:900:0:0:0,-7.52575,-80.2105	0/1:36:14,22:14:504:22:792:-60.7138,0,-34.5915	0/0:35:35,0:35:1256:0:0:0,-10.536,-109.535	0/1:58:35,23:35:1260:23:824:-56.916,0,-94.8664	0/1:74:38,36:38:1368:36:1292:-93.8284,0,-99.0859	0/1:53:33,20:33:1184:20:716:-48.7676,0,-87.098	0/1:163:92,71:92:3243:71:2548:-180.174,0,-236.556	0/1:20:13,7:13:468:7:252:-16.9846,0,-33.5063	0/1:107:63,44:63:2237:44:1576:-109.671,0,-167.008	0/0:31:31,0:31:1097:0:0:0,-9.33193,-95.353	0/0:82:78,4:78:2789:4:144:0,-11.3804,-231.845	0/1:48:33,15:33:1165:15:540:-34.44,0,-86.3886	0/1:79:45,34:45:1616:34:1224:-86.4772,0,-117.046	0/1:49:26,23:26:936:23:828:-59.9721,0,-68.5908	0/1:73:38,35:38:1356:35:1242:-89.7037,0,-98.9967	0/1:30:16,14:16:572:14:504:-36.6342,0,-42.1586	0/1:81:41,40:41:1461:40:1439:-105.097,0,-104.308	0/1:13:5,8:5:176:8:288:-22.327,0,-12.2716	0/0:42:42,0:42:1497:0:0:0,-12.6433,-133.931	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.242	0/0:32:32,0:32:1140:0:0:0,-9.63296,-101.762	0/1:89:41,48:41:1453:48:1720:-128.087,0,-102.373	0/1:52:16,36:16:538:36:1296:-100.844,0,-33.0027	0/0:138:138,0:138:4895:0:0:0,-41.5421,-437.174	0/0:73:73,0:73:2586:0:0:0,-21.9752,-229.548
chr01	16258504	.	T	G	7836.71	PASS	AB=0.23345;ABP=2109.86;AC=74;AF=0.393617;AN=188;AO=914;CIGAR=1X;DP=4828;DPB=4828;DPRA=1.53333;EPP=1987.74;EPPR=8493.47;GTI=33;LEN=1;MEANALT=1.04444;MQM=59.709;MQMR=59.9049;NS=94;NUMALT=1;ODDS=0.197703;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32562;QR=140034;RO=3910;RPL=0;RPP=1987.74;RPPR=8484.78;RPR=914;RUN=1;SAF=0;SAP=1987.74;SAR=914;SRF=1;SRP=8484.78;SRR=3909;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	0/0:48:44,4:44:1563:4:144:0,-1.13582,-127.647	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9624	0/1:170:145,25:145:5208:25:881:-28.4282,0,-417.682	0/1:8:2,6:2:72:6:216:-17.3729,0,-4.42848	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:44:43,1:43:1548:1:36:0,-9.64704,-136.01	0/1:62:34,28:34:1220:28:1004:-71.9957,0,-91.4429	0/1:46:27,19:27:964:19:684:-48.021,0,-73.2294	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.112	0/1:22:19,3:19:676:3:108:-3.44767,0,-54.5453	0/1:66:57,9:57:2044:9:324:-9.62963,0,-164.364	0/0:63:57,5:57:2037:5:172:0,-3.2023,-167.727	0/1:34:29,5:29:1044:5:176:-5.95,0,-84.0394	0/0:42:39,3:39:1396:3:108:0,-2.56809,-115.853	0/0:43:41,2:41:1456:2:72:0,-6.11241,-124.504	0/1:28:25,3:25:900:3:108:-1.64633,0,-72.8922	0/1:28:24,4:24:860:4:144:-4.88478,0,-69.2848	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:23:20,3:20:720:3:104:-2.77912,0,-58.2051	0/1:81:62,19:62:2209:19:671:-36.3185,0,-174.69	0/1:22:17,5:17:612:5:180:-9.91146,0,-48.7908	0/1:40:29,11:29:1044:11:396:-23.9415,0,-82.2336	0/1:29:22,7:22:783:7:248:-13.9343,0,-62.0631	0/1:9:3,6:3:108:6:207:-16.2576,0,-7.3659	0/1:134:114,20:114:4077:20:697:-22.7126,0,-326.768	0/1:120:96,24:96:3435:24:852:-40.8761,0,-273.173	0/1:42:35,7:35:1244:7:243:-9.56422,0,-99.6214	0/1:123:108,15:108:3873:15:531:-11.0952,0,-311.736	0/0:71:67,4:67:2404:4:144:0,-8.05951,-203.298	0/1:50:44,6:44:1576:6:207:-3.91539,0,-127.08	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:31:3,28:3:108:28:993:-80.3424,0,-0.74324	0/1:18:6,12:6:212:12:432:-33.8027,0,-14.0063	0/1:22:2,20:2:72:20:720:-58.5061,0,-0.205468	0/1:126:109,17:109:3908:17:612:-17.4837,0,-313.979	0/1:22:18,4:18:644:4:144:-6.69096,0,-51.6679	0/1:31:28,3:28:1008:3:108:-0.74324,0,-81.7044	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/0:88:81,7:81:2904:7:252:0,-3.46168,-238.56	0/0:20:19,1:19:684:1:36:0,-2.42232,-58.1619	0/1:33:17,16:17:612:16:568:-41.5179,0,-45.4794	0/1:34:28,6:28:1004:6:216:-9.55311,0,-80.4408	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.393	0/1:30:11,19:11:396:19:672:-51.7759,0,-25.9233	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:99:63,36:63:2256:36:1284:-86.0493,0,-173.499	0/0:36:34,2:34:1220:2:72:0,-4.00036,-103.27	0/1:67:53,14:53:1889:14:500:-25.1672,0,-150.117	0/1:36:32,4:32:1152:4:144:-2.47654,0,-93.1531	0/1:10:3,7:3:104:7:252:-20.0187,0,-6.69251	0/1:43:30,13:30:1076:13:464:-29.1532,0,-84.2086	0/1:45:27,18:27:964:18:644:-44.7433,0,-73.5305	0/1:23:11,12:11:392:12:424:-31.5645,0,-28.6964	0/1:92:79,13:79:2806:13:460:-14.0406,0,-225.054	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:26:5,21:5:176:21:756:-60.5386,0,-8.35824	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:29:25,4:25:900:4:144:-4.58375,0,-72.5865	0/1:83:66,17:66:2376:17:612:-30.4279,0,-189.076	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/0:239:218,21:218:7829:21:748:0,-4.30178,-636.985	0/1:45:34,11:34:1220:11:392:-22.0713,0,-96.5605	0/0:53:50,3:50:1785:3:108:0,-5.87942,-150.851	0/1:29:13,16:13:468:16:572:-43.0836,0,-33.7298	0/0:63:59,4:59:2120:4:144:0,-5.65127,-177.732	0/1:64:58,6:58:2069:6:216:-0.524593,0,-167.213	0/1:16:12,4:12:432:4:137:-7.77351,0,-34.4047	0/1:27:22,5:22:792:5:176:-8.05387,0,-63.4779	0/1:50:44,6:44:1572:6:216:-4.73901,0,-126.718	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:55:47,7:47:1688:7:252:-6.44842,0,-135.622	0/0:71:70,1:70:2504:1:27:0,-18.6733,-222.905	0/1:43:31,12:31:1116:12:420:-25.0567,0,-87.8074	0/1:178:154,24:154:5468:24:849:-23.1445,0,-438.64	0/1:27:17,10:17:608:10:360:-24.6165,0,-46.9242	0/0:121:110,11:110:3936:11:387:0,-1.25869,-319.263	0/1:34:26,8:26:936:8:288:-16.0324,0,-74.3244	0/1:93:67,26:67:2412:26:924:-55.4726,0,-189.34	0/1:69:46,23:46:1656:23:828:-54.0649,0,-128.549	0/1:111:84,27:84:2997:27:960:-53.2987,0,-236.545	0/1:39:35,4:35:1260:4:140:-1.20201,0,-101.965	0/1:74:64,10:64:2273:10:360:-10.4681,0,-182.555	0/0:27:25,2:25:892:2:72:0,-1.29109,-73.763	0/0:97:89,7:89:3192:7:243:0,-7.01471,-265.288	0/1:11:9,2:9:320:2:68:-3.14638,0,-25.831	0/1:36:31,5:31:1116:5:165:-4.33652,0,-89.9146	0/1:52:47,5:47:1688:5:180:-0.898505,0,-136.553	0/0:12:11,1:11:392:1:36:0,-0.0140849,-32.0218	0/0:55:54,1:54:1932:1:32:0,-13.3573,-170.957	0/0:49:47,1:47:1692:1:36:0,-11.211,-148.94	0/1:142:128,14:128:4600:14:504:-2.95183,0,-371.416	0/1:76:65,11:65:2328:11:396:-13.1045,0,-186.902
chr01	16258518	.	GCCAA	ACCAA,ACCAG	97677.2	PASS	AB=0.564123,0.428755;ABP=92.4033,105.735;AC=139,37;AF=0.739362,0.196809;AN=188;AO=3675,1005;CIGAR=1X4M,1X3M1X;DP=4824;DPB=4823.6;DPRA=0,1.09761;EPP=7983.17,2185.34;EPPR=250.558;GTI=10;LEN=1,5;MEANALT=1.75532,2.32558;MQM=59.9176,59.797;MQMR=60;NS=94;NUMALT=2;ODDS=3520.96;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=131254,35472;QR=3989;RO=114;RPL=0,0;RPP=7983.17,2185.34;RPPR=250.558;RPR=3675,1005;RUN=1,1;SAF=0,0;SAP=7983.17,2185.34;SAR=3675,1005;SRF=0;SRP=250.558;SRR=114;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:3,9,0:3:101:9,0:324,0:-25.8935,0,-5.81077,-26.7966,-8.52004,-34.9743	1/2:47:2,31,13:2:71:31,13:1103,467:-121.602,-32.3142,-28.7669,-84.1063,0,-85.9781	1/1:44:3,41,0:3:106:41,0:1472,0:-122.887,-3.35616,0,-123.79,-12.3422,-132.423	1/1:173:4,167,0:4:139:167,0:5990,0:-526.247,-38.9795,0,-527.451,-50.272,-538.751	1/1:8:0,8,0:0:0:8,0:288,0:-26.2581,-2.40824,0,-26.2581,-2.40824,-26.2581	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:44:0,13,31:0:0:13,31:468,1102:-128.342,-90.1539,-86.2405,-38.5463,0,-29.2143	1/1:64:1,63,0:1:36:63,0:2240,0:-198.239,-15.6676,0,-198.54,-18.9649,-201.477	1/2:46:0,38,8:0:0:38,8:1353,285:-133.838,-23.5863,-12.1472,-110.607,0,-108.199	1/1:76:0,76,0:0:0:76,0:2711,0:-244.234,-22.8783,0,-244.234,-22.8783,-244.234	1/1:22:0,21,0:0:0:21,0:756,0:-68.0053,-6.32163,0,-68.0053,-6.32163,-68.0053	1/1:66:1,65,0:1:36:65,0:2340,0:-207.251,-16.2697,0,-207.552,-19.567,-210.489	1/2:63:2,33,27:2:63:33,27:1184,943:-167.62,-71.6406,-66.7712,-91.5529,0,-88.4895	1/1:34:0,34,0:0:0:34,0:1201,0:-108.393,-10.235,0,-108.393,-10.235,-108.393	1/2:42:0,19,22:0:0:19,22:676,779:-118.58,-63.4854,-57.7658,-55.127,0,-48.5043	1/1:42:0,42,0:0:0:42,0:1483,0:-133.759,-12.6433,0,-133.759,-12.6433,-133.759	1/1:28:0,27,0:0:0:27,0:968,0:-87.0776,-8.12781,0,-87.0776,-8.12781,-87.0776	1/2:28:0,15,13:0:0:15,13:534,446:-80.0745,-36.5452,-32.0297,-43.8783,0,-39.9649	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/2:24:0,15,9:0:0:15,9:525,321:-69.2328,-26.5242,-22.0087,-43.0626,0,-40.3533	1/2:82:0,62,20:0:0:62,20:2224,697:-238.427,-57.0315,-38.3676,-181.746,0,-175.726	1/2:22:0,7,15:0:0:7,15:252,532:-64.2436,-43.6976,-41.5904,-20.9039,0,-16.3885	1/1:41:3,38,0:3:108:38,0:1355,0:-112.175,-2.26706,0,-113.078,-11.4391,-121.89	1/1:29:1,27,1:1:36:27,1:957,36:-82.8458,-5.19039,0,-80.2092,-5.19039,-82.8458	0/1:9:1,8,0:1:34:8,0:288,0:-23.5581,0,-0.689641,-23.8592,-3.09788,-26.6149	1/2:133:2,73,57:2:67:73,57:2569,2028:-368.414,-159.889,-143.339,-203.737,0,-192.003	1/2:121:3,64,52:3:108:64,52:2282,1845:-326.633,-141.516,-131.062,-177.223,0,-170.382	1/1:40:0,40,0:0:0:40,0:1420,0:-128.097,-12.0412,0,-128.097,-12.0412,-128.097	1/1:122:0,121,0:0:0:121,0:4324,0:-388.974,-36.4246,0,-388.974,-36.4246,-388.974	1/1:70:0,66,4:0:0:66,4:2355,144:-211.848,-19.868,0,-200.098,-7.75848,-198.894	1/1:48:1,47,0:1:36:47,0:1692,0:-148.969,-10.8512,0,-149.27,-14.1484,-152.207	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	0/1:32:11,20,1:11:362:20,1:716,36:-55.0679,0,-23.2085,-55.4417,-26.2891,-84.3878	0/1:18:2,16,0:2:72:16,0:572,0:-46.3949,0,-1.41818,-46.9969,-6.23466,-52.8721	0/1:22:3,18,1:3:108:18,1:648,36:-51.9713,0,-3.39439,-49.9451,-5.88388,-58.4564	1/2:123:2,67,54:2:72:67,54:2412,1919:-346.699,-150.492,-136.198,-190.932,0,-180.551	1/2:23:0,13,9:0:0:13,9:468,323:-64.5331,-26.3461,-22.4327,-38.1864,0,-35.4772	1/2:30:1,14,15:1:31:14,15:504,518:-80.4618,-39.6319,-37.9038,-38.6852,0,-36.655	1/1:17:1,16,0:1:35:16,0:576,0:-48.6764,-1.61888,0,-48.9774,-4.81648,-51.8245	1/2:87:0,47,40:0:0:47,40:1675,1427:-253.215,-116.683,-102.535,-136.888,0,-124.847	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:32:2,29,1:2:68:29,1:1023,36:-85.9175,-3.2274,0,-83.5819,-5.7858,-88.7958	1/1:34:1,33,0:1:36:33,0:1169,0:-101.916,-6.63675,0,-102.217,-9.93399,-105.154	1/1:35:0,34,0:0:0:34,0:1220,0:-109.834,-10.235,0,-109.834,-10.235,-109.834	1/1:30:0,28,0:0:0:28,0:1004,0:-90.3978,-8.42884,0,-90.3978,-8.42884,-90.3978	0/1:10:2,7,1:2:72:7,1:252,36:-19.9599,0,-3.76762,-17.6245,-2.93742,-23.1983	1/2:100:3,59,36:3:108:59,36:2120,1238:-263.754,-91.7055,-82.7581,-164.13,0,-162.106	1/2:38:0,22,16:0:0:22,16:788,565:-110.631,-46.3643,-39.7417,-64.6221,0,-59.8057	1/2:68:1,43,24:1:34:43,24:1536,858:-192.149,-67.2189,-57.0319,-122.491,0,-118.024	1/1:36:1,35,0:1:36:35,0:1256,0:-109.747,-7.23881,0,-110.048,-10.5361,-112.985	0/1:10:1,9,0:1:36:9,0:315,0:-25.6769,0,-0.587975,-25.978,-3.29724,-28.9164	1/1:43:0,43,0:0:0:43,0:1525,0:-137.541,-12.9443,0,-137.541,-12.9443,-137.541	1/1:44:2,42,0:2:72:42,0:1504,0:-128.817,-6.4086,0,-129.419,-12.6433,-135.294	0/1:24:3,21,0:3:98:21,0:756,0:-61.1205,0,-1.91932,-62.0236,-8.24095,-69.9339	1/1:93:1,91,0:1:35:91,0:3230,0:-287.466,-24.5009,0,-287.767,-27.3937,-290.614	1/1:12:1,11,0:1:36:11,0:392,0:-32.0218,-0.0140851,0,-32.3228,-3.31133,-35.2605	0/1:27:3,24,0:3:106:24,0:855,0:-69.139,0,-1.76129,-70.0421,-8.98601,-78.6746	1/2:11:0,6,5:0:0:6,5:216,178:-32.4902,-14.8635,-13.0573,-17.9843,0,-16.4792	1/1:31:0,31,0:0:0:31,0:1108,0:-100.026,-9.33193,0,-100.026,-9.33193,-100.026	1/1:81:1,80,0:1:36:80,0:2855,0:-253.587,-20.7852,0,-253.888,-24.0824,-256.825	0/1:14:4,10,0:4:138:10,0:360,0:-28.5299,0,-8.54562,-29.734,-11.5559,-40.9408	1/1:236:3,232,0:3:108:232,0:8323,0:-739.013,-60.9816,0,-739.916,-69.839,-748.728	1/1:45:0,45,0:0:0:45,0:1616,0:-145.728,-13.5464,0,-145.728,-13.5464,-145.728	1/2:53:0,28,24:0:0:28,24:997,842:-149.776,-68.5142,-60.0854,-81.2558,0,-74.0311	0/1:26:3,23,0:3:100:23,0:824,0:-66.6565,0,-1.50363,-67.5596,-8.42732,-75.6508	1/1:63:0,61,0:0:0:61,0:2175,0:-195.719,-18.3628,0,-195.719,-18.3628,-195.719	1/1:64:0,64,0:0:0:64,0:2272,0:-204.74,-19.2659,0,-204.74,-19.2659,-204.74	1/1:16:0,16,0:0:0:16,0:563,0:-50.9528,-4.81648,0,-50.9528,-4.81648,-50.9528	1/1:28:0,27,0:0:0:27,0:960,0:-86.4882,-8.12781,0,-86.4882,-8.12781,-86.4882	1/2:50:1,25,24:1:36:25,24:888,856:-138.895,-66.8385,-62.2503,-69.416,0,-65.1289	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:54:1,28,25:1:36:28,25:999,886:-150.366,-69.2269,-63.7357,-78.4984,0,-73.9102	1/2:70:0,41,27:0:0:41,27:1448,935:-193.991,-76.0648,-63.7225,-118.013,0,-109.885	1/2:42:2,23,17:2:72:23,17:824,606:-110.12,-43.5195,-42.471,-61.325,0,-62.0824	1/2:178:3,82,92:3:107:82,92:2931,3228:-492.053,-253.97,-238.009,-230.284,0,-211.311	1/2:26:0,14,12:0:0:14,12:495,426:-75.3797,-35.0652,-30.8508,-40.6686,0,-37.0563	1/2:122:1,69,52:1:36:69,52:2446,1836:-345.535,-146.569,-128.735,-196.324,0,-183.608	0/1:33:4,29,0:4:139:29,0:1036,0:-83.6199,0,-2.91822,-84.824,-11.6481,-96.1236	1/1:91:4,87,0:4:143:87,0:3115,0:-267.345,-14.1723,0,-268.55,-26.1896,-280.209	1/2:68:2,40,26:2:72:40,26:1436,925:-186.022,-69.4927,-63.3266,-111.254,0,-109.302	1/2:111:2,71,37:2:72:71,37:2525,1313:-306.266,-101.099,-85.6006,-199.889,0,-194.626	1/2:40:1,19,19:1:36:19,19:676,665:-105.979,-51.186,-48.4045,-52.176,0,-49.3942	1/2:75:5,26,44:5:180:26,44:936,1531:-184.659,-109.787,-116.649,-61.6858,0,-63.1275	1/2:28:1,13,14:1:36:13,14:464,501:-75.4411,-37.9152,-36.9394,-34.8869,0,-33.6101	1/2:97:2,41,54:2:72:41,54:1437,1935:-268.254,-151.932,-145.464,-111.043,0,-100.663	1/2:11:0,8,3:0:0:8,3:288,107:-32.5808,-9.07908,-6.67084,-23.8592,0,-22.9561	1/1:39:1,38,0:1:36:38,0:1356,0:-118.742,-8.1419,0,-119.043,-11.4391,-121.981	1/1:51:1,50,0:1:35:50,0:1783,0:-157.253,-11.8539,0,-157.554,-15.0515,-160.402	1/1:12:1,11,0:1:36:11,0:396,0:-32.3845,-0.0140851,0,-32.6855,-3.31133,-35.6229	1/2:54:0,29,25:0:0:29,25:1025,857:-153.4,-69.9164,-61.1865,-83.8308,0,-76.3051	1/2:49:0,17,32:0:0:17,32:612,1120:-141.413,-91.4734,-86.3559,-50.2955,0,-40.6626	1/1:145:3,140,0:3:105:140,0:5040,0:-443.942,-33.6072,0,-444.845,-42.1442,-453.388	1/1:75:0,75,0:0:0:75,0:2679,0:-241.355,-22.5773,0,-241.355,-22.5773,-241.355
chr01	16518323	.	ATCCTTAC	ATCCTGAC,GTCCTAC	119724	PASS	AB=0.467339,0.522956;ABP=27.8335,15.2732;AC=145,43;AF=0.771277,0.228723;AN=188;AO=4147,1445;CIGAR=5M1X2M,1X3M1D3M;DP=5638;DPB=5456.25;DPRA=13.5966,1.40366;EPP=9008.11,3140.79;EPPR=9.52472;GTI=0;LEN=1,7;MEANALT=1.8587,2.48889;MQM=59.3169,55.018;MQMR=60;NS=94;NUMALT=2;ODDS=1.41481;PAIRED=0,0;PAIREDR=0;PAO=0.333333,5;PQA=0,180;PQR=0;PRO=0.333333;QA=148233,50964;QR=108;RO=3;RPL=0,0;RPP=9008.11,3140.79;RPPR=9.52472;RPR=4147,1445;RUN=1,1;SAF=4147,1445;SAP=9008.11,3140.79;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,10,0:0:0:10,0:352,0:-31.6632,-3.0103,0,-31.6632,-3.0103,-31.6632	1/2:72:0,28,44:0:0:28,44:981,1562:-206.929,-127.25,-118.821,-80.0302,0,-66.7849	1/1:83:0,83,0:0:0:83,0:2968,0:-267.222,-24.9855,0,-267.222,-24.9855,-267.222	1/1:143:0,143,0:0:0:143,0:5108,0:-459.727,-43.0473,0,-459.727,-43.0473,-459.727	1/1:35:0,35,0:0:0:35,0:1260,0:-113.579,-10.5361,0,-113.579,-10.5361,-113.579	1/1:43:0,41,0:0:0:41,0:1452,0:-130.571,-12.3422,0,-130.571,-12.3422,-130.571	1/2:84:0,34,48:0:0:34,48:1220,1703:-237.912,-138.403,-128.168,-99.5357,0,-85.0862	1/1:73:0,73,0:0:0:73,0:2624,0:-236.2,-21.9752,0,-236.2,-21.9752,-236.2	1/2:42:0,14,22:0:0:14,22:504,780:-104.533,-63.4058,-59.1913,-41.1416,0,-34.5189	1/1:41:0,41,0:0:0:41,0:1457,0:-131.317,-12.3422,0,-131.317,-12.3422,-131.317	1/1:51:0,51,0:0:0:51,0:1810,0:-163.145,-15.3525,0,-163.145,-15.3525,-163.145	1/1:80:0,79,0:0:0:79,0:2844,0:-255.873,-23.7814,0,-255.873,-23.7814,-255.873	1/2:35:0,12,23:0:0:12,23:432,792:-99.8016,-64.5479,-60.9356,-35.6079,0,-28.6842	1/1:39:1,38,0:1:36:38,0:1364,0:-119.402,-8.1419,0,-119.703,-11.4391,-122.641	1/2:51:0,25,26:0:0:25,26:892,905:-146.5,-73.7777,-66.2519,-73.0739,0,-65.2472	1/1:42:0,42,0:0:0:42,0:1504,0:-135.597,-12.6433,0,-135.597,-12.6433,-135.597	1/1:38:0,37,0:0:0:37,0:1315,0:-118.278,-11.1381,0,-118.278,-11.1381,-118.278	1/2:49:0,18,31:0:0:18,31:648,1090:-141.045,-88.1688,-82.7502,-53.2315,0,-43.8996	1/2:28:0,13,15:0:0:13,15:468,526:-81.2619,-43.0709,-39.1575,-38.5463,0,-34.0308	1/2:111:1,43,66:1:36:43,66:1536,2329:-311.174,-186.26,-176.253,-122.274,0,-105.344	1/2:63:0,36,26:0:0:36,26:1292,913:-179.352,-73.9669,-63.1298,-105.396,0,-97.5689	1/2:94:0,37,57:0:0:37,57:1316,2003:-270.436,-163.193,-152.055,-107.596,0,-90.4372	1/1:33:0,33,0:0:0:33,0:1180,0:-106.466,-9.93399,0,-106.466,-9.93399,-106.466	1/1:38:0,36,1:0:0:36,1:1284,36:-115.554,-10.8371,0,-112.62,-7.84813,-112.318	1/1:31:0,31,0:0:0:31,0:1112,0:-100.375,-9.33193,0,-100.375,-9.33193,-100.375	1/2:152:0,76,75:0:0:76,75:2709,2642:-435.709,-214.937,-192.059,-220.768,0,-198.191	1/2:119:0,61,58:0:0:61,58:2180,2044:-344.199,-166.507,-148.144,-178.046,0,-160.587	1/1:24:0,24,0:0:0:24,0:860,0:-77.7195,-7.22472,0,-77.7195,-7.22472,-77.7195	1/1:182:0,181,0:0:0:181,0:6466,0:-581.733,-54.4864,0,-581.733,-54.4864,-581.733	1/1:70:0,69,1:0:0:69,1:2476,36:-222.66,-20.7711,0,-219.726,-17.4775,-219.425	1/1:75:0,75,0:0:0:75,0:2676,0:-241.018,-22.5773,0,-241.018,-22.5773,-241.018	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:20:0,19,0:0:0:19,0:680,0:-61.2109,-5.71957,0,-61.2109,-5.71957,-61.2109	2/2:5:0,0,4:0:0:0,4:0,144:-12.9286,-12.9286,-12.9286,-1.20412,-1.20412,0	1/1:6:0,6,0:0:0:6,0:212,0:-19.4107,-1.80618,0,-19.4107,-1.80618,-19.4107	1/1:13:0,13,0:0:0:13,0:453,0:-41.0996,-3.91339,0,-41.0996,-3.91339,-41.0996	1/2:123:0,55,67:0:0:55,67:1976,2392:-355.842,-194.68,-178.123,-161.162,0,-140.993	1/2:90:0,48,41:0:0:48,41:1715,1439:-256.793,-117.022,-102.572,-139.81,0,-127.467	1/2:40:0,16,24:0:0:16,24:568,855:-116.164,-69.8833,-65.0668,-46.6354,0,-39.4107	2/2:4:0,0,4:0:0:0,4:0,144:-13.1946,-13.1946,-13.1946,-1.20412,-1.20412,0	1/2:68:0,28,40:0:0:28,40:1008,1402:-196.218,-113.98,-105.551,-82.5938,0,-70.5526	1/1:27:0,27,0:0:0:27,0:968,0:-87.3919,-8.12781,0,-87.3919,-8.12781,-87.3919	1/1:49:0,49,0:0:0:49,0:1746,0:-157.372,-14.7505,0,-157.372,-14.7505,-157.372	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1026,-9.0309,0,-97.1026,-9.0309,-97.1026	1/1:44:0,43,0:0:0:43,0:1539,0:-138.501,-12.9443,0,-138.501,-12.9443,-138.501	1/1:50:0,50,0:0:0:50,0:1784,0:-160.838,-15.0515,0,-160.838,-15.0515,-160.838	1/1:105:0,105,0:0:0:105,0:3749,0:-337.571,-31.6082,0,-337.571,-31.6082,-337.571	1/2:108:0,58,50:0:0:58,50:2080,1753:-312.47,-142.869,-125.41,-169.955,0,-154.903	1/2:72:0,36,36:0:0:36,36:1277,1275:-207.416,-104.043,-93.2055,-103.726,0,-92.8892	1/2:75:0,40,34:0:0:40,34:1431,1211:-215.366,-98.6835,-86.6423,-116.785,0,-106.55	1/1:80:0,78,0:0:0:78,0:2781,0:-250.156,-23.4803,0,-250.156,-23.4803,-250.156	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:88:0,88,0:0:0:88,0:3168,0:-285.226,-26.4906,0,-285.226,-26.4906,-285.226	1/1:44:0,44,0:0:0:44,0:1576,0:-142.108,-13.2453,0,-142.108,-13.2453,-142.108	1/1:7:0,7,0:0:0:7,0:248,0:-22.3888,-2.10721,0,-22.3888,-2.10721,-22.3888	1/1:134:0,133,0:0:0:133,0:4761,0:-428.096,-40.037,0,-428.096,-40.037,-428.096	1/1:42:0,42,0:0:0:42,0:1490,0:-134.229,-12.6433,0,-134.229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chr01	16518366	.	GATCA	TATCG,TATCA	119014	PASS	AB=0.480927,0.517577;ABP=11.4591,10.1857;AC=145,43;AF=0.771277,0.228723;AN=188;AO=4222,1431;CIGAR=1X3M1X,1X4M;DP=5670;DPB=5671.8;DPRA=13.6739,1.36553;EPP=9170.97,3110.39;EPPR=7.35324;GTI=0;LEN=5,1;MEANALT=1.6413,2.08696;MQM=59.2084,55.0846;MQMR=60;NS=94;NUMALT=2;ODDS=2.30168;PAIRED=0,0;PAIREDR=0;PAO=4.5,4.5;PQA=153.5,153.5;PQR=0;PRO=0;QA=148227,50823;QR=67;RO=2;RPL=4222,1431;RPP=9170.97,3110.39;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=4222,1431;SAP=9170.97,3110.39;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12,0:0:0:12,0:410,0:-37.1911,-3.61236,0,-37.1911,-3.61236,-37.1911	1/2:71:0,28,43:0:0:28,43:985,1540:-205.547,-125.498,-117.069,-80.4025,0,-67.4582	1/1:85:0,85,0:0:0:85,0:2963,0:-266.78,-25.5876,0,-266.78,-25.5876,-266.78	1/1:144:0,144,0:0:0:144,0:5069,0:-456.271,-43.3483,0,-456.271,-43.3483,-456.271	1/1:36:0,34,1:0:0:34,1:1202,36:-108.039,-10.235,0,-105.102,-7.27242,-104.801	1/1:45:0,45,0:0:0:45,0:1549,0:-139.599,-13.5464,0,-139.599,-13.5464,-139.599	1/2:86:0,38,48:0:0:38,48:1327,1697:-246.053,-138.271,-126.832,-108.132,0,-93.6825	1/1:75:0,74,0:0:0:74,0:2608,0:-234.505,-22.2762,0,-234.505,-22.2762,-234.505	1/2:42:0,19,23:0:0:19,23:672,815:-120.846,-66.4231,-60.7035,-54.7748,0,-47.8511	1/1:40:0,40,0:0:0:40,0:1404,0:-126.602,-12.0412,0,-126.602,-12.0412,-126.602	1/1:51:0,51,0:0:0:51,0:1788,0:-161.166,-15.3525,0,-161.166,-15.3525,-161.166	1/1:80:0,80,0:0:0:80,0:2808,0:-252.735,-24.0824,0,-252.735,-24.0824,-252.735	1/2:35:0,13,22:0:0:13,22:454,760:-98.9066,-61.9757,-58.0623,-37.2784,0,-30.6557	1/1:40:1,39,0:1:36:39,0:1362,0:-119.233,-8.44293,0,-119.534,-11.7402,-122.472	1/2:51:0,26,24:0:0:26,24:918,839:-142.905,-68.146,-60.3192,-74.7511,0,-67.5264	1/1:43:0,43,0:0:0:43,0:1531,0:-138.025,-12.9443,0,-138.025,-12.9443,-138.025	1/1:38:0,38,0:0:0:38,0:1326,0:-119.58,-11.4391,0,-119.58,-11.4391,-119.58	1/2:48:0,18,29:0:0:18,29:644,1029:-135.708,-83.1918,-77.7733,-52.6166,0,-43.8868	1/2:29:0,13,16:0:0:13,16:451,568:-83.2008,-46.5435,-42.6301,-37.0074,0,-32.191	1/2:109:0,45,64:0:0:45,64:1594,2279:-315.634,-185.82,-172.274,-130.169,0,-110.903	1/2:61:0,36,25:0:0:36,25:1264,888:-175.307,-72.4388,-61.6017,-103.221,0,-95.6949	1/2:93:0,37,56:0:0:37,56:1307,1979:-267.902,-161.469,-150.331,-106.787,0,-89.9291	1/1:32:0,32,0:0:0:32,0:1117,0:-100.816,-9.63296,0,-100.816,-9.63296,-100.816	1/1:41:0,40,1:0:0:40,1:1408,36:-126.098,-12.0412,0,-123.163,-8.74766,-122.862	1/1:31:0,31,0:0:0:31,0:1083,0:-97.765,-9.33193,0,-97.765,-9.33193,-97.765	1/2:153:0,77,76:0:0:77,76:2702,2706:-440.534,-220.678,-197.499,-220.209,0,-197.331	1/2:121:0,63,58:0:0:63,58:2223,2076:-350.334,-169.357,-150.393,-181.331,0,-163.872	1/1:25:0,25,0:0:0:25,0:877,0:-79.2455,-7.52575,0,-79.2455,-7.52575,-79.2455	1/1:181:0,180,0:0:0:180,0:6295,0:-566.255,-54.1854,0,-566.255,-54.1854,-566.255	1/1:71:0,69,1:0:0:69,1:2424,32:-218.023,-20.7711,0,-215.447,-18.2085,-215.146	1/1:77:0,75,0:0:0:75,0:2645,0:-237.968,-22.5773,0,-237.968,-22.5773,-237.968	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/1:20:0,20,0:0:0:20,0:690,0:-62.36,-6.0206,0,-62.36,-6.0206,-62.36	2/2:5:0,0,5:0:0:0,5:0,180:-16.5268,-16.5268,-16.5268,-1.50515,-1.50515,0	1/1:6:0,6,0:0:0:6,0:201,0:-18.4068,-1.80618,0,-18.4068,-1.80618,-18.4068	1/1:13:0,13,0:0:0:13,0:464,0:-42.0978,-3.91339,0,-42.0978,-3.91339,-42.0978	1/2:120:0,56,64:0:0:56,64:1976,2284:-347.324,-186.455,-169.597,-161.224,0,-141.958	1/2:90:0,50,40:0:0:50,40:1782,1423:-261.016,-116.193,-101.141,-145.179,0,-133.138	1/2:41:1,17,23:1:31:17,23:596,820:-112.431,-64.2341,-61.6032,-46.0521,0,-41.6147	2/2:4:0,0,4:0:0:0,4:0,144:-13.1946,-13.1946,-13.1946,-1.20412,-1.20412,0	1/2:68:0,28,39:0:0:28,39:993,1383:-193.186,-112.284,-103.855,-80.8979,0,-69.1578	1/1:28:0,28,0:0:0:28,0:994,0:-89.7325,-8.42884,0,-89.7325,-8.42884,-89.7325	1/1:51:0,51,0:0:0:51,0:1799,0:-162.082,-15.3525,0,-162.082,-15.3525,-162.082	1/1:32:0,32,0:0:0:32,0:1126,0:-101.601,-9.63296,0,-101.601,-9.63296,-101.601	1/1:45:0,45,0:0:0:45,0:1563,0:-140.871,-13.5464,0,-140.871,-13.5464,-140.871	1/1:52:0,52,0:0:0:52,0:1833,0:-165.247,-15.6536,0,-165.247,-15.6536,-165.247	1/1:106:0,105,0:0:0:105,0:3713,0:-333.981,-31.6082,0,-333.981,-31.6082,-333.981	1/2:109:0,60,49:0:0:60,49:2117,1744:-314.631,-142.29,-124.228,-172.637,0,-157.886	1/2:70:0,36,34:0:0:36,34:1263,1216:-201.138,-99.3107,-88.4736,-102.18,0,-91.9451	1/2:75:0,41,34:0:0:41,34:1430,1192:-213.493,-97.2091,-84.8669,-116.633,0,-106.398	1/1:81:0,81,0:0:0:81,0:2832,0:-255.06,-24.3834,0,-255.06,-24.3834,-255.06	1/1:6:0,6,0:0:0:6,0:199,0:-18.2356,-1.80618,0,-18.2356,-1.80618,-18.2356	1/1:88:0,88,0:0:0:88,0:3127,0:-280.521,-26.4906,0,-280.521,-26.4906,-280.521	1/1:44:0,44,0:0:0:44,0:1516,0:-136.723,-13.2453,0,-136.723,-13.2453,-136.723	1/1:7:0,7,0:0:0:7,0:247,0:-22.0755,-2.10721,0,-22.0755,-2.10721,-22.0755	1/1:133:0,133,0:0:0:133,0:4638,0:-417.531,-40.037,0,-417.531,-40.037,-417.531	1/1:41:0,40,0:0:0:40,0:1366,0:-122.813,-12.0412,0,-122.813,-12.0412,-122.813	1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chr01	16527942	.	T	A	231603	PASS	AB=0.485994;ABP=13.1077;AC=147;AF=0.781915;AN=188;AO=8602;CIGAR=1X;DP=11669;DPB=11669;DPRA=125.462;EPP=18569.3;EPPR=6574.12;GTI=6;LEN=1;MEANALT=1.05376;MQM=59.9913;MQMR=59.9971;NS=94;NUMALT=1;ODDS=0.294141;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=306996;QR=108874;RO=3062;RPL=4088;RPP=48.8218;RPPR=110.875;RPR=4514;RUN=1;SAF=4075;SAP=54.5844;SAR=4527;SRF=1327;SRP=121.061;SRR=1735;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1353:-122.07,-11.4391,0	0/1:170:93,77:93:3303:77:2764:-197.826,0,-246.315	1/1:155:1,154:1:36:154:5438:-485.955,-43.0614,0	1/1:246:1,245:1:36:245:8738:-782.814,-70.4551,0	1/1:80:1,79:1:32:79:2828:-251.559,-20.8831,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:145:72,73:72:2557:73:2616:-192.038,0,-186.73	1/1:200:0,200:0:0:200:7161:-644.545,-60.206,0	0/1:136:71,64:71:2509:64:2284:-164.823,0,-185.063	1/1:81:0,81:0:0:81:2895:-260.786,-24.3834,0	1/1:175:0,175:0:0:175:6244:-562.055,-52.6803,0	1/1:158:0,158:0:0:158:5596:-503.765,-47.5627,0	0/1:130:69,60:69:2460:60:2148:-154.395,0,-182.462	1/1:146:0,146:0:0:146:5237:-471.465,-43.9504,0	0/1:167:85,82:85:3026:82:2919:-212.673,0,-222.298	1/1:112:1,111:1:36:111:3929:-350.207,-30.1171,0	1/1:97:0,97:0:0:97:3438:-309.632,-29.1999,0	0/1:113:57,56:57:2016:56:2012:-147.337,0,-147.694	0/1:92:46,46:46:1644:46:1648:-120.914,0,-120.554	0/1:165:91,74:91:3260:74:2644:-188.537,0,-243.951	0/1:171:85,86:85:3024:86:3013:-219.922,0,-220.913	0/1:65:52,13:52:1864:13:464:-22.5306,0,-148.472	1/1:88:3,85:3:104:85:3014:-261.786,-16.7878,0	1/1:135:6,129:6:216:129:4621:-396.261,-20.8485,0	1/1:74:0,74:0:0:74:2635:-237.396,-22.2762,0	0/1:242:118,124:118:4212:124:4417:-324.853,0,-306.413	0/1:328:174,154:174:6228:154:5501:-396.48,0,-461.878	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:191:0,191:0:0:191:6839:-615.578,-57.4967,0	1/1:95:0,95:0:0:95:3376:-304.055,-28.5979,0	1/1:100:0,100:0:0:100:3566:-321.148,-30.103,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	0/1:390:174,216:174:6175:216:7750:-580.127,0,-438.447	0/1:106:62,44:62:2203:44:1576:-110.222,0,-166.626	0/1:141:82,59:82:2901:59:2107:-147.453,0,-218.878	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:172:99,73:99:3467:73:2595:-182.019,0,-260.463	1/1:88:0,88:0:0:88:3151:-283.814,-26.4906,0	1/1:174:0,174:0:0:174:6224:-560.257,-52.3792,0	1/1:181:0,181:0:0:181:6480:-583.285,-54.4864,0	1/1:166:0,166:0:0:166:5894:-530.572,-49.971,0	1/1:100:0,100:0:0:100:3571:-321.596,-30.103,0	1/1:103:1,102:1:36:102:3631:-323.385,-27.4078,0	0/1:177:82,95:82:2936:95:3408:-253.652,0,-211.192	0/1:90:43,47:43:1493:47:1692:-125.474,0,-107.566	0/1:158:88,70:88:3137:70:2501:-177.779,0,-234.992	1/1:129:0,129:0:0:129:4604:-414.523,-38.8329,0	1/1:6:0,6:0:0:6:197:-18.0513,-1.80618,0	1/1:91:0,91:0:0:91:3261:-293.71,-27.3937,0	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:120:0,120:0:0:120:4284:-385.737,-36.1236,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:19:7,12:7:248:12:432:-33.5016,0,-16.9446	1/1:141:0,141:0:0:141:5026:-452.485,-42.4452,0	1/1:185:0,185:0:0:185:6629:-596.687,-55.6906,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:149:0,149:0:0:149:5319:-478.844,-44.8535,0	1/1:164:1,163:1:36:163:5805:-518.965,-45.7706,0	0/1:108:48,60:48:1720:60:2131:-159.546,0,-122.574	1/1:92:0,92:0:0:92:3287:-296.013,-27.6948,0	1/1:187:2,184:2:72:184:6537:-581.578,-49.5147,0	1/1:128:2,126:2:72:126:4509:-399.141,-31.6951,0	1/1:142:0,142:0:0:142:5008:-450.87,-42.7463,0	1/1:86:0,86:0:0:86:3069:-276.437,-25.8886,0	0/1:191:104,87:104:3712:87:3096:-221.372,0,-276.786	1/1:27:0,27:0:0:27:956:-86.3557,-8.12781,0	0/1:69:33,36:33:1188:36:1271:-93.9197,0,-86.4575	0/1:60:28,32:28:996:32:1139:-84.7566,0,-71.8931	0/1:215:114,101:114:4071:101:3602:-259.665,0,-301.855	0/1:122:65,57:65:2321:57:2052:-148.226,0,-172.423	0/1:110:42,68:42:1500:68:2432:-186.021,0,-102.181	0/1:210:97,113:97:3480:113:4007:-297.599,0,-250.194	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:102:44,58:44:1572:58:2088:-157.485,0,-111.067	0/1:106:40,66:40:1428:66:2368:-181.469,0,-96.9084	0/1:211:99,112:99:3491:112:4018:-298.291,0,-250.882	0/1:159:75,84:75:2683:84:3012:-223.447,0,-193.851	0/1:151:84,67:84:3000:67:2404:-171.161,0,-224.777	0/1:183:99,84:99:3511:84:2986:-213.882,0,-261.111	0/1:285:143,141:143:5070:141:5025:-366.632,0,-370.683	0/1:52:24,28:24:848:28:987:-73.4895,0,-60.9861	1/1:141:0,141:0:0:141:5044:-454.103,-42.4452,0	1/1:134:0,134:0:0:134:4799:-432.065,-40.338,0	1/1:119:0,119:0:0:119:4224:-380.342,-35.8226,0	0/1:232:141,90:141:4957:90:3198:-218.145,0,-376.374	0/1:172:107,65:107:3775:65:2328:-158.003,0,-288.171	1/1:108:0,108:0:0:108:3875:-348.943,-32.5112,0	1/1:248:0,248:0:0:248:8869:-798.191,-74.6554,0
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chr01	16841623	.	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chr01	16841667	.	T	C	23260.6	PASS	AB=0.52433;ABP=16.6412;AC=39;AF=0.207447;AN=188;AO=1398;CIGAR=1X;DP=5524;DPB=5524;DPRA=1.49581;EPP=3021.38;EPPR=8945.14;GTI=4;LEN=1;MEANALT=1.08696;MQM=59.6159;MQMR=59.9343;NS=94;NUMALT=1;ODDS=0.380446;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49476;QR=146852;RO=4122;RPL=1398;RPP=3038.73;RPPR=8927.78;RPR=0;RUN=1;SAF=1396;SAP=3021.38;SAR=2;SRF=4118;SRP=8919.11;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1663:0:0:0,-14.1484,-149.957	0/1:28:15,12:15:531:12:428:-30.4083,0,-39.672	0/0:85:85,0:85:3029:0:0:0,-25.5875,-272.839	0/0:178:177,1:177:6296:1:36:0,-49.9851,-563.137	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:47:33,14:33:1188:14:484:-29.7345,0,-93.0802	0/0:89:89,0:89:3179:0:0:0,-26.7917,-286.326	0/1:71:41,30:41:1450:30:1049:-73.3284,0,-109.404	0/0:42:42,0:42:1478:0:0:0,-12.6433,-133.31	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:79:79,0:79:2815:0:0:0,-23.7814,-252.314	0/1:44:21,23:21:752:23:824:-61.2183,0,-53.8204	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:50:28,22:28:1004:22:792:-56.5425,0,-75.6244	0/0:40:40,0:40:1402:0:0:0,-12.0412,-126.476	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:18:5,13:5:180:13:460:-36.3004,0,-11.1335	0/1:21:11,10:11:373:10:360:-26.4062,0,-27.5736	0/1:103:45,58:45:1612:58:2058:-154.475,0,-114.364	0/1:101:49,52:49:1725:52:1833:-134.829,0,-125.129	0/1:91:25,66:25:885:66:2338:-183.281,0,-52.5728	0/0:71:70,1:70:2499:1:36:0,-17.7749,-221.564	0/0:46:45,1:45:1616:1:36:0,-10.2491,-142.132	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/1:184:88,96:88:3134:96:3386:-249.564,0,-226.891	0/1:149:68,80:68:2415:80:2832:-210.193,0,-172.694	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:168:168,0:168:6003:0:0:0,-50.573,-540.373	0/0:83:83,0:83:2955:0:0:0,-24.9855,-266.179	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:5,1:5:180:1:36:-1.79038,0,-14.7459	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:109:52,57:52:1846:57:2002:-147.636,0,-133.606	0/1:72:28,44:28:981:44:1575:-120.362,0,-66.9269	0/1:39:25,13:25:896:13:468:-30.6533,0,-69.1623	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:74:35,39:35:1260:39:1378:-102.032,0,-91.4293	0/0:37:36,1:36:1283:1:36:0,-7.53983,-112.174	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.605	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:66:66,0:66:2346:0:0:0,-19.868,-211.398	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.952	0/1:116:45,71:45:1608:71:2490:-189.414,0,-110.091	0/1:85:30,55:30:1068:55:1903:-145.908,0,-70.8445	0/1:59:31,28:31:1112:28:972:-70.0284,0,-82.6306	0/0:122:122,0:122:4351:0:0:0,-36.7257,-390.317	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:104:103,1:103:3700:1:36:0,-27.7088,-329.603	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.235	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:126:126,0:126:4477:0:0:0,-37.9298,-403.094	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:2,6:2:63:6:207:-16.5577,0,-3.57491	0/0:49:49,0:49:1739:0:0:0,-14.7505,-156.789	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.091	0/0:109:109,0:109:3893:0:0:0,-32.8123,-350.563	0/1:32:20,12:20:695:12:421:-28.5792,0,-53.2384	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/0:63:61,2:61:2188:2:63:0,-12.9817,-191.203	0/0:104:103,1:103:3660:1:36:0,-27.7088,-326.005	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:51:51,0:51:1814:0:0:0,-15.3525,-163.54	0/1:62:32,30:32:1133:30:1072:-78.1192,0,-83.6128	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:84:46,37:46:1631:37:1300:-91.9218,0,-121.733	0/1:62:18,44:18:629:44:1572:-123.104,0,-38.2699	0/1:90:46,44:46:1626:44:1550:-112.685,0,-119.535	0/1:135:72,63:72:2561:63:2219:-159.326,0,-190.099	0/1:71:27,44:27:972:44:1563:-119.583,0,-66.4248	0/1:60:29,31:29:1026:31:1112:-82.2482,0,-74.5813	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:45:26,19:26:932:19:680:-47.9828,0,-70.6525	0/1:81:39,42:39:1381:42:1488:-109.802,0,-100.203	0/1:115:56,59:56:1995:59:2116:-156.078,0,-145.205	0/1:63:30,33:30:1076:33:1171:-86.7318,0,-78.1703	0/1:48:18,30:18:648:30:1080:-83.0591,0,-44.2024	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/1:88:44,44:44:1563:44:1563:-114.463,0,-114.47	0/1:16:10,6:10:351:6:216:-14.974,0,-27.1102	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.712	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.4993	0/1:74:43,31:43:1544:31:1100:-77.0131,0,-116.977	0/1:46:17,29:17:604:29:1031:-79.2529,0,-40.8432	0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8427	0/0:63:63,0:63:2215:0:0:0,-18.9649,-199.613
chr01	16842889	.	AT	GT,GC	217814	PASS	AB=0.444057,0.554082;ABP=119.873,112.228;AC=148,40;AF=0.787234,0.212766;AN=188;AO=7669,2407;CIGAR=1X1M,2X;DP=10092;DPB=10092;DPRA=0,1.70785;EPP=16656,5229.74;EPPR=13.8677;GTI=1;LEN=1,2;MEANALT=1.69149,2.16667;MQM=59.9446,59.9065;MQMR=60;NS=94;NUMALT=2;ODDS=1.62609;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=273708,85214;QR=170;RO=5;RPL=0,0;RPP=16656,5229.74;RPPR=13.8677;RPR=7669,2407;RUN=1,1;SAF=7669,2407;SAP=16656,5229.74;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/2:127:0,38,89:0:0:38,89:1368,3147:-368.286,-256.662,-245.223,-111.982,0,-85.19	1/1:48:0,48,0:0:0:48,0:1705,0:-153.734,-14.4494,0,-153.734,-14.4494,-153.734	1/1:73:0,73,0:0:0:73,0:2624,0:-236.407,-21.9752,0,-236.407,-21.9752,-236.407	1/1:45:0,44,0:0:0:44,0:1572,0:-141.515,-13.2453,0,-141.515,-13.2453,-141.515	1/1:14:0,14,0:0:0:14,0:485,0:-43.977,-4.21442,0,-43.977,-4.21442,-43.977	1/2:70:0,28,42:0:0:28,42:1008,1480:-203.092,-120.841,-112.412,-82.6075,0,-69.9643	1/1:107:0,106,1:0:0:106,1:3800,36:-341.837,-31.9092,0,-338.899,-28.6119,-338.598	1/2:60:0,28,32:0:0:28,32:1000,1142:-174.828,-93.2982,-84.8694,-81.8865,0,-72.2536	1/1:43:0,43,0:0:0:43,0:1529,0:-137.901,-12.9443,0,-137.901,-12.9443,-137.901	1/1:242:0,242,0:0:0:242,0:8586,0:-772.686,-72.8493,0,-772.686,-72.8493,-772.686	1/1:50:0,50,0:0:0:50,0:1788,0:-161.203,-15.0515,0,-161.203,-15.0515,-161.203	1/2:35:0,24,11:0:0:24,11:852,394:-101.909,-32.4902,-25.2655,-69.7757,0,-66.4643	1/1:52:0,52,0:0:0:52,0:1856,0:-167.32,-15.6536,0,-167.32,-15.6536,-167.32	1/2:31:0,18,13:0:0:18,13:648,468:-91.4198,-38.5463,-33.1277,-53.2333,0,-49.32	1/1:29:0,29,0:0:0:29,0:1023,0:-92.3822,-8.72987,0,-92.3822,-8.72987,-92.3822	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/2:27:0,11,16:0:0:11,16:396,560:-78.2276,-45.9119,-42.6006,-32.6714,0,-27.8549	1/2:168:0,59,109:0:0:59,109:2112,3814:-482.869,-310.636,-292.876,-172.587,0,-139.775	1/2:65:0,26,39:0:0:26,39:924,1348:-185.172,-109.873,-102.046,-75.6509,0,-63.9107	1/2:98:0,47,51:0:0:47,51:1673,1807:-283.91,-147.559,-133.41,-136.707,0,-121.354	1/2:67:0,18,49:0:0:18,49:635,1756:-195.278,-143.574,-138.155,-52.0584,0,-37.308	1/1:51:0,51,0:0:0:51,0:1828,0:-164.801,-15.3525,0,-164.801,-15.3525,-164.801	1/2:64:0,57,7:0:0:57,7:2040,248:-186.916,-20.5572,-3.39849,-166.713,0,-164.606	1/1:29:0,29,0:0:0:29,0:1029,0:-92.9211,-8.72987,0,-92.9211,-8.72987,-92.9211	1/2:164:0,91,72:0:0:91,72:3268,2554:-474.774,-208.184,-180.79,-266.695,0,-245.02	1/2:82:0,37,45:0:0:37,45:1317,1614:-239.339,-132.004,-120.866,-107.692,0,-94.1454	1/1:14:0,14,0:0:0:14,0:500,0:-45.3362,-4.21442,0,-45.3362,-4.21442,-45.3362	1/1:101:1,98,2:1:34:98,2:3480,72:-309.982,-26.7496,0,-304.408,-23.6128,-306.563	1/1:137:0,136,1:0:0:136,1:4838,36:-435.214,-40.9401,0,-432.277,-37.6428,-431.976	1/1:85:0,85,0:0:0:85,0:3017,0:-271.758,-25.5876,0,-271.758,-25.5876,-271.758	1/1:385:0,385,0:0:0:385,0:13773,0:-1239.33,-115.897,0,-1239.33,-115.897,-1239.33	1/1:261:1,257,2:1:36:257,2:9116,72:-816.802,-74.4181,0,-811.228,-71.4624,-813.563	1/2:404:0,132,272:0:0:132,272:4725,9621:-1169.27,-783.955,-744.219,-385.671,0,-303.791	1/1:416:0,412,3:0:0:412,3:14688,108:-1321.33,-124.024,0,-1312.51,-115.13,-1311.61	1/1:255:1,253,1:1:28:253,1:9033,36:-810.087,-73.9818,0,-807.451,-73.1832,-809.368	1/2:123:1,56,66:1:36:56,66:2004,2345:-351.262,-188.143,-174.223,-160.479,0,-143.548	1/2:136:0,84,52:0:0:84,52:3012,1855:-397.242,-151.575,-126.289,-246.024,0,-230.371	1/2:236:0,101,133:0:0:101,133:3620,4725:-680.281,-385.036,-354.632,-295.295,0,-255.258	1/2:160:0,75,84:0:0:75,84:2663,3012:-462.352,-245.373,-222.796,-217.054,0,-191.767	1/2:58:0,28,30:0:0:28,30:1000,1068:-168.931,-87.4008,-78.972,-81.8865,0,-72.8556	1/1:113:0,113,0:0:0:113,0:4021,0:-362.062,-34.0164,0,-362.062,-34.0164,-362.062	1/1:70:0,69,1:0:0:69,1:2476,36:-222.734,-20.7711,0,-219.796,-17.4738,-219.495	1/1:47:0,47,0:0:0:47,0:1673,0:-150.855,-14.1484,0,-150.855,-14.1484,-150.855	1/1:33:0,32,1:0:0:32,1:1129,36:-101.557,-9.63296,0,-98.6191,-6.33572,-98.3181	1/1:38:0,38,0:0:0:38,0:1352,0:-121.976,-11.4391,0,-121.976,-11.4391,-121.976	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/2:108:0,58,50:0:0:58,50:2049,1741:-308.788,-141.918,-124.458,-167.22,0,-152.169	1/2:44:0,19,24:0:0:19,24:680,847:-124.418,-68.9644,-63.2448,-55.4499,0,-48.2252	1/2:82:0,44,38:0:0:44,38:1576,1344:-238.349,-109.819,-96.5735,-128.886,0,-117.447	1/1:75:0,75,0:0:0:75,0:2654,0:-239.104,-22.5773,0,-239.104,-22.5773,-239.104	1/1:239:0,239,0:0:0:239,0:8531,0:-767.786,-71.9462,0,-767.786,-71.9462,-767.786	1/1:60:0,60,0:0:0:60,0:2148,0:-193.584,-18.0618,0,-193.584,-18.0618,-193.584	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/1:285:0,284,1:0:0:284,1:10133,36:-911.202,-85.4925,0,-908.265,-82.1953,-907.964	1/1:64:0,64,0:0:0:64,0:2277,0:-205.191,-19.2659,0,-205.191,-19.2659,-205.191	1/1:30:0,30,0:0: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chr01	16918465	.	A	G	185484	PASS	AB=0.478768;ABP=24.4951;AC=149;AF=0.792553;AN=188;AO=8517;CIGAR=1X;DP=11410;DPB=11410;DPRA=20.4373;EPP=16917.1;EPPR=5506.55;GTI=5;LEN=1;MEANALT=1.06452;MQM=59.8725;MQMR=59.9151;NS=94;NUMALT=1;ODDS=0.886039;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302873;QR=102938;RO=2887;RPL=186;RPP=16917.1;RPPR=5506.55;RPR=8331;RUN=1;SAF=8517;SAP=18497.4;SAR=0;SRF=2887;SRP=6272.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:1,24:1:36:24:850:-73.2048,-3.92748,0	0/1:216:106,110:106:3789:110:3904:-286.041,0,-275.757	1/1:153:0,153:0:0:153:5431:-488.906,-46.0576,0	1/1:258:1,257:1:32:257:9127:-818.205,-74.4664,0	1/1:60:0,60:0:0:60:2148:-193.583,-18.0618,0	1/1:96:0,96:0:0:96:3409:-307.005,-28.8989,0	0/1:134:72,62:72:2569:62:2224:-160.086,0,-191.12	1/1:172:1,170:1:36:170:6040:-540.16,-48.1727,0	0/1:79:36,43:36:1277:43:1513:-112.667,0,-91.4497	1/1:151:0,151:0:0:151:5361:-482.475,-45.4555,0	1/1:79:2,77:2:72:77:2768:-242.518,-16.9446,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:67:37,30:37:1316:30:1080:-77.3442,0,-97.9432	1/1:84:0,84:0:0:84:2960:-266.524,-25.2865,0	0/1:70:41,29:41:1449:29:1024:-71.3991,0,-109.632	1/1:58:0,58:0:0:58:2065:-186.119,-17.4597,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:81:43,38:43:1535:38:1360:-98.3172,0,-114.059	0/1:34:12,22:12:405:22:792:-61.3707,0,-26.538	0/1:265:127,137:127:4556:137:4878:-359.339,0,-330.367	0/1:177:84,93:84:3005:93:3307:-244.565,0,-217.393	0/1:134:86,48:86:3073:48:1716:-114.379,0,-236.351	1/1:135:1,134:1:36:134:4792:-426.464,-37.0408,0	1/1:136:5,131:5:180:131:4685:-405.256,-24.388,0	1/1:52:0,52:0:0:52:1856:-167.314,-15.6536,0	0/1:518:281,237:281:9997:237:8402:-600.237,0,-743.716	0/1:261:143,118:143:5074:118:4217:-301.136,0,-378.229	1/1:43:1,42:1:36:42:1503:-131.966,-9.34602,0	1/1:325:1,324:1:36:324:11487:-1030.04,-94.2365,0	1/1:315:0,315:0:0:315:11186:-1006.44,-94.8245,0	1/1:238:0,238:0:0:238:8469:-762.112,-71.6451,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:215:100,115:100:3580:115:4092:-303.72,0,-257.686	0/1:226:108,118:108:3849:118:4179:-308.259,0,-278.573	0/1:77:40,37:40:1436:37:1319:-95.8319,0,-106.358	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.395	0/1:237:144,93:144:5089:93:3264:-222.633,0,-386.803	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:136:0,136:0:0:136:4826:-434.385,-40.9401,0	1/1:93:0,93:0:0:93:3324:-299.372,-27.9958,0	1/1:56:0,56:0:0:56:1996:-179.912,-16.8577,0	1/1:108:0,108:0:0:108:3856:-347.227,-32.5112,0	1/1:150:0,150:0:0:150:5288:-476.049,-45.1545,0	0/1:263:136,126:136:4835:126:4467:-322.759,0,-355.577	0/1:160:87,73:87:3094:73:2582:-184.462,0,-230.52	0/1:247:124,123:124:4414:123:4381:-320.108,0,-323.077	1/1:134:0,134:0:0:134:4761:-428.65,-40.338,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:149:0,149:0:0:149:5310:-478.033,-44.8535,0	1/1:135:0,135:0:0:135:4800:-432.148,-40.6391,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:151:0,150:0:0:150:5293:-476.147,-45.1545,0	1/1:78:0,78:0:0:78:2704:-243.6,-23.4803,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	1/1:93:0,93:0:0:93:3321:-299.106,-27.9958,0	1/1:122:1,121:1:36:121:4324:-385.751,-33.1469,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:411:0,411:0:0:411:14637:-1317,-123.723,0	1/1:262:0,262:0:0:262:9341:-840.658,-78.8699,0	0/1:112:56,56:56:2004:56:1980:-144.758,0,-146.873	1/1:130:1,129:1:36:129:4563:-407.22,-35.5356,0	1/1:196:3,192:3:108:192:6829:-604.598,-48.9855,0	1/1:209:4,205:4:144:205:7268:-640.861,-49.6017,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:96:0,96:0:0:96:3428:-308.734,-28.8989,0	0/1:97:47,50:47:1684:50:1781:-130.35,0,-122.647	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:102:46,56:46:1648:56:1973:-146.978,0,-117.903	0/1:103:61,42:61:2188:42:1496:-103.928,0,-166.18	0/1:160:84,76:84:2993:76:2709:-195.883,0,-221.436	0/1:230:131,99:131:4681:99:3547:-250.201,0,-352.207	0/1:93:33,60:33:1184:60:2138:-164.691,0,-78.8725	0/1:143:76,67:76:2683:67:2399:-173.118,0,-198.664	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:100:61,39:61:2192:39:1378:-94.2134,0,-167.442	0/1:135:72,63:72:2565:63:2252:-162.296,0,-190.46	0/1:214:101,113:101:3605:113:3986:-294.51,0,-260.235	0/1:99:54,45:54:1921:45:1616:-115.922,0,-143.357	0/1:96:55,41:55:1968:41:1468:-103.517,0,-148.496	1/1:144:0,144:0:0:144:5129:-461.753,-43.3483,0	0/1:149:68,81:68:2440:81:2854:-212.24,0,-175.001	0/1:34:16,18:16:572:18:625:-46.3374,0,-41.5784	1/1:60:0,60:0:0:60:2126:-191.501,-18.0618,0	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	0/1:69:36,33:36:1296:33:1180:-85.737,0,-96.1729	0/1:67:45,22:45:1612:22:784:-50.7149,0,-125.195	1/1:156:0,155:0:0:155:5506:-495.295,-46.6597,0	1/1:105:1,104:1:36:104:3730:-332.302,-28.0099,0
chr01	16918571	.	T	C	123834	PASS	AB=0.555197;ABP=84.9935;AC=147;AF=0.790323;AN=186;AO=5811;CIGAR=1X;DP=7210;DPB=7210;DPRA=78.3587;EPP=12560.7;EPPR=3027.87;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.8954;MQMR=59.9943;NS=93;NUMALT=1;ODDS=0.46472;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206736;QR=48267;RO=1393;RPL=5804;RPP=12560.7;RPPR=3027.87;RPR=7;RUN=1;SAF=0;SAP=12621.4;SAR=5811;SRF=0;SRP=3027.87;SRR=1393;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:38:11,26:11:377:26:921:-71.8518,0,-22.8988	1/1:125:0,125:0:0:125:4439:-398.651,-37.6288,0	1/1:164:0,164:0:0:164:5796:-521.75,-49.3689,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:24:0,24:0:0:24:822:-74.2909,-7.22472,0	0/1:75:35,40:35:1229:40:1417:-105.246,0,-88.3346	1/1:115:0,115:0:0:115:4060:-365.379,-34.6185,0	0/1:130:75,55:75:2489:55:1964:-137.901,0,-185.117	1/1:84:1,83:1:36:83:2927:-260.063,-21.6882,0	1/1:47:0,47:0:0:47:1659:-149.597,-14.1484,0	1/1:118:0,118:0:0:118:4221:-379.968,-35.5215,0	0/1:82:48,33:48:1701:33:1173:-81.2779,0,-128.778	1/1:58:0,58:0:0:58:2046:-184.408,-17.4597,0	0/1:55:28,26:28:980:26:928:-67.2229,0,-71.8951	1/1:51:0,51:0:0:51:1808:-163,-15.3525,0	1/1:28:1,27:1:36:27:968:-83.8391,-4.83057,0	0/1:33:14,19:14:500:19:680:-51.5952,0,-35.4022	0/1:34:17,17:17:597:17:608:-44.8166,0,-43.8211	0/1:112:36,76:36:1265:76:2709:-210.337,0,-80.4352	0/1:123:52,71:52:1785:71:2536:-191.44,0,-123.896	0/1:55:36,19:36:1258:19:676:-44.6113,0,-96.9616	1/1:128:1,127:1:36:127:4522:-402.357,-34.9336,0	1/1:65:4,61:4:144:61:2147:-180.179,-6.25333,0	1/1:58:0,58:0:0:58:2065:-186.115,-17.4597,0	0/1:161:78,83:78:2588:83:2980:-219.948,0,-184.692	0/1:213:79,134:79:2767:134:4778:-366.051,0,-185.15	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:143:0,143:0:0:143:5067:-456.152,-43.0473,0	1/1:142:1,141:1:36:141:5006:-447.078,-39.148,0	1/1:88:0,88:0:0:88:3103:-279.237,-26.4906,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:421:-38.2228,-3.61236,0	1/1:20:1,19:1:36:19:680:-57.9309,-2.42233,0	0/1:189:95,94:95:3385:94:3304:-240.671,0,-247.97	0/1:53:19,34:19:638:34:1205:-92.7993,0,-41.7783	0/1:72:35,37:35:1245:37:1332:-98.5082,0,-90.6786	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:84:28,56:28:957:56:2012:-156.066,0,-61.1488	1/1:36:0,36:0:0:36:1292:-116.577,-10.8371,0	1/1:113:0,113:0:0:113:4037:-363.512,-34.0164,0	1/1:53:0,53:0:0:53:1894:-170.738,-15.9546,0	1/1:76:0,76:0:0:76:2715:-243.573,-22.8783,0	1/1:147:0,147:0:0:147:5216:-469.085,-44.2514,0	1/1:92:1,91:1:36:91:3272:-291.101,-24.0965,0	0/1:48:25,23:25:798:23:816:-59.3123,0,-57.6627	0/1:79:30,49:30:970:49:1736:-132.741,0,-63.809	0/1:61:20,41:20:686:41:1453:-112.698,0,-43.6929	1/1:163:0,162:0:0:162:5756:-517.749,-48.7669,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:98:0,98:0:0:98:3486:-313.949,-29.5009,0	1/1:47:0,47:0:0:47:1646:-148.423,-14.1484,0	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	1/1:86:0,86:0:0:86:3077:-277.027,-25.8886,0	1/1:60:0,60:0:0:60:2126:-191.605,-18.0618,0	1/1:9:0,9:0:0:9:305:-27.7772,-2.70927,0	0/1:17:11,6:11:362:6:216:-14.673,0,-27.7783	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:89:2,87:2:72:87:3120:-274.189,-19.9549,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:176:0,176:0:0:176:6305:-567.482,-52.9813,0	1/1:141:0,141:0:0:141:5008:-450.857,-42.4452,0	0/1:79:46,33:46:1617:33:1154:-80.3809,0,-122.036	1/1:45:0,45:0:0:45:1590:-143.384,-13.5464,0	1/1:98:2,96:2:72:96:3407:-300.004,-22.6642,0	1/1:192:0,192:0:0:192:6857:-616.614,-57.7978,0	1/1:43:1,42:1:36:42:1485:-130.34,-9.34602,0	1/1:74:0,74:0:0:74:2641:-237.927,-22.2762,0	0/1:37:15,22:15:525:22:773:-58.7514,0,-36.4399	1/1:26:0,25:0:0:25:884:-79.5188,-7.52575,0	0/1:127:39,88:39:1366:88:3141:-244.684,0,-85.0036	0/1:87:37,50:37:1260:50:1777:-134.021,0,-87.5022	0/1:72:26,46:26:913:46:1599:-122.519,0,-60.8098	0/1:109:49,60:49:1741:60:2130:-159.152,0,-124.16	0/1:79:35,44:35:1211:44:1561:-116.998,0,-85.5056	0/1:83:35,48:35:1224:48:1724:-130.46,0,-85.4754	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:54:23,31:23:809:31:1082:-81.4291,0,-56.8727	0/1:79:30,49:30:1046:49:1745:-133.546,0,-70.6645	0/1:137:53,84:53:1806:84:3009:-229.798,0,-121.569	0/1:54:20,34:20:712:34:1220:-93.8512,0,-48.1501	0/1:85:41,44:41:1464:44:1580:-116.904,0,-106.469	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	0/1:123:55,68:55:1937:68:2431:-182.018,0,-137.578	0/1:28:11,17:11:366:17:612:-46.9846,0,-24.8297	1/1:66:0,66:0:0:66:2355:-212.208,-19.868,0	1/1:89:0,89:0:0:89:3187:-287.053,-26.7917,0	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	0/1:76:36,40:36:1224:40:1427:-105.848,0,-87.5745	0/1:75:52,23:52:1821:23:824:-51.9037,0,-141.592	1/1:133:2,130:2:72:130:4624:-409.484,-33.2591,0	1/1:110:0,110:0:0:110:3888:-350.109,-33.1133,0
chr01	16973619	.	GCA	GCG	91292.9	PASS	AB=0.49077;ABP=4.65381;AC=151;AF=0.803191;AN=188;AO=3701;CIGAR=2M1X;DP=4852;DPB=4852;DPRA=0;EPP=3996.78;EPPR=1122.77;GTI=2;LEN=1;MEANALT=1.23404;MQM=59.9735;MQMR=59.9929;NS=94;NUMALT=1;ODDS=0.228599;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131761;QR=39757;RO=1126;RPL=3153;RPP=3984.55;RPPR=1122.77;RPR=548;RUN=1;SAF=3699;SAP=8022.27;SAR=2;SRF=1126;SRP=2448.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:30:15,15:15:536:15:536:-39.5439,0,-39.5441	1/1:141:0,140:0:0:140:4984:-448.461,-42.1442,0	1/1:96:0,95:0:0:95:3408:-306.574,-28.5979,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:17:0,17:0:0:17:591:-53.5149,-5.11751,0	0/1:36:15,21:15:535:21:752:-57.1692,0,-37.6475	1/1:59:0,59:0:0:59:2095:-188.819,-17.7608,0	0/1:51:29,21:29:1031:21:752:-52.595,0,-77.6918	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:58:0,58:0:0:58:2071:-186.66,-17.4597,0	1/1:89:0,88:0:0:88:3132:-281.745,-26.4906,0	0/1:75:37,38:37:1301:38:1328:-97.2397,0,-94.8124	1/1:49:0,49:0:0:49:1749:-157.692,-14.7505,0	0/1:58:31,27:31:1112:27:968:-69.9776,0,-82.9318	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:28:0,28:0:0:28:982:-88.6917,-8.42884,0	0/1:27:12,15:12:430:15:540:-40.8087,0,-30.9123	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	0/1:74:39,30:39:1376:30:1076:-76.0256,0,-103.011	0/1:60:26,34:26:932:34:1220:-92.045,0,-66.1373	0/1:14:8,6:8:278:6:216:-15.5761,0,-21.1424	1/1:34:0,33:0:0:33:1180:-106.148,-9.93399,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:113:49,63:49:1729:63:2213:-165.463,0,-121.927	0/1:76:37,39:37:1316:39:1377:-101.349,0,-95.8631	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	1/1:83:0,83:0:0:83:2960:-266.263,-24.9855,0	1/1:87:0,87:0:0:87:3102:-279.407,-26.1896,0	1/1:35:0,35:0:0:35:1233:-111.274,-10.5361,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:184:102,82:102:3608:82:2920:-207.644,0,-269.537	0/1:43:22,19:22:768:19:675:-48.3934,0,-56.7558	0/1:38:19,19:19:665:19:680:-50.09,0,-48.7354	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:50:26,23:26:914:23:815:-58.5607,0,-67.4662	1/1:25:0,25:0:0:25:874:-78.9752,-7.52575,0	1/1:39:1,38:1:34:38:1348:-118.221,-8.34126,0	1/1:53:0,53:0:0:53:1890:-170.377,-15.9546,0	1/1:45:2,43:2:72:43:1523:-130.525,-6.70963,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:71:0,71:0:0:71:2525:-227.501,-21.3731,0	0/1:74:29,44:29:1036:44:1572:-119.437,0,-71.2192	0/1:69:33,36:33:1157:36:1262:-93.1082,0,-83.6647	0/1:62:23,39:23:809:39:1384:-106.195,0,-54.4652	1/1:41:1,40:1:36:40:1425:-124.949,-8.74396,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:46:0,46:0:0:46:1633:-147.257,-13.8474,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:61:0,61:0:0:61:2161:-194.756,-18.3628,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	1/1:83:2,80:2:72:80:2859:-250.714,-18.2008,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:110:2,106:2:72:106:3782:-333.773,-26.0019,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	0/1:53:19,34:19:664:34:1215:-93.7012,0,-44.1287	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:97:1,96:1:36:96:3440:-306.215,-25.6016,0	1/1:88:0,87:0:0:87:3065:-275.72,-26.1896,0	1/1:39:0,38:0:0:38:1356:-121.981,-11.4391,0	1/1:55:0,55:0:0:55:1949:-175.684,-16.5567,0	0/1:37:15,22:15:524:22:775:-58.9331,0,-36.3514	1/1:10:0,10:0:0:10:356:-32.3789,-3.0103,0	0/1:67:30,36:30:1050:36:1273:-94.6243,0,-74.5792	0/1:39:19,20:19:649:20:716:-53.0275,0,-46.9871	0/1:57:32,25:32:1122:25:896:-63.8016,0,-84.1293	0/1:60:23,37:23:816:37:1319:-100.949,0,-55.6996	0/1:39:27,12:27:960:12:432:-27.481,0,-74.9763	0/1:82:41,41:41:1443:41:1461:-107.1,0,-105.479	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:64:27,36:27:950:36:1292:-97.2591,0,-66.4899	0/1:45:23,22:23:792:22:788:-57.6984,0,-58.0485	0/1:65:29,36:29:1015:36:1261:-94.217,0,-72.0932	0/1:66:40,26:40:1431:26:921:-63.3372,0,-109.22	0/1:67:37,30:37:1323:30:1043:-74.0071,0,-99.2032	1/1:31:0,31:0:0:31:1095:-98.8583,-9.33193,0	0/1:121:72,48:72:2544:48:1715:-118.152,0,-192.728	0/1:30:17,13:17:597:13:468:-33.4287,0,-45.0252	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:64:0,64:0:0:64:2271:-204.652,-19.2659,0	1/1:44:0,44:0:0:44:1566:-141.23,-13.2453,0	0/1:98:47,51:47:1644:51:1809:-133.588,0,-118.744	0/1:61:50,11:50:1766:11:396:-17.6199,0,-140.859	1/1:112:0,110:0:0:110:3932:-353.777,-33.1133,0	1/1:90:0,90:0:0:90:3204:-288.576,-27.0927,0
chr01	17018253	.	A	T	168917	PASS	AB=0.484771;ABP=13.9896;AC=150;AF=0.797872;AN=188;AO=8898;CIGAR=1X;DP=11737;DPB=11737;DPRA=0;EPP=19324.8;EPPR=6115.73;GTI=2;LEN=1;MEANALT=1.10638;MQM=38.0508;MQMR=53.4358;NS=94;NUMALT=1;ODDS=1.1128;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317861;QR=100946;RO=2827;RPL=8898;RPP=19324.8;RPPR=6133.08;RPR=0;RUN=1;SAF=8898;SAP=19324.8;SAR=0;SRF=2825;SRP=6124.4;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:124:0,124:0:0:124:4401:-375.717,-37.3277,0	0/1:93:42,51:42:1504:51:1836:-130.85,0,-107.563	1/1:122:0,120:0:0:120:4299:-370.451,-36.1236,0	1/1:266:1,265:1:36:265:9473:-773.437,-76.4848,0	1/1:93:0,93:0:0:93:3344:-272.933,-27.9958,0	1/1:112:0,112:0:0:112:4020:-344.499,-33.7154,0	0/1:161:90,71:90:3236:71:2528:-159.637,0,-240.354	1/1:129:0,129:0:0:129:4629:-398.065,-38.8329,0	1/1:191:0,191:0:0:191:6807:-584.737,-57.4967,0	1/1:109:1,108:1:36:108:3884:-316.771,-29.223,0	1/1:64:0,64:0:0:64:2291:-186.595,-19.2659,0	1/1:162:0,161:0:0:161:5752:-494.697,-48.4658,0	0/1:87:43,43:43:1523:43:1527:-106.207,0,-110.974	1/1:80:0,80:0:0:80:2821:-230.497,-24.0824,0	0/1:70:29,41:29:1024:41:1457:-99.5696,0,-70.7978	1/1:73:0,73:0:0:73:2598:-214.993,-21.9752,0	1/1:66:0,66:0:0:66:2367:-201.763,-19.868,0	0/1:38:19,19:19:658:19:680:-47.6899,0,-47.978	0/1:19:11,8:11:396:8:284:-18.7684,0,-30.2372	0/1:266:142,123:142:5071:123:4404:-281.403,0,-373.588	0/1:259:108,151:108:3855:151:5351:-363.071,0,-268.039	0/1:245:196,49:196:7036:49:1760:-82.6361,0,-559.453	1/1:231:0,231:0:0:231:8261:-676.429,-69.5379,0	1/1:124:10,114:10:360:114:4071:-300.271,-4.6936,0	1/1:164:0,164:0:0:164:5872:-481.864,-49.3689,0	0/1:359:182,177:182:6507:177:6338:-453.636,0,-477.426	0/1:239:118,121:118:4240:121:4326:-284.68,0,-306.631	1/1:40:0,40:0:0:40:1420:-117.663,-12.0412,0	1/1:308:0,308:0:0:308:11013:-975.903,-92.7172,0	1/1:180:2,178:2:72:178:6372:-516.538,-47.3949,0	1/1:142:0,141:0:0:141:5048:-413.011,-42.4452,0	1/1:16:0,16:0:0:16:576:-47.8359,-4.81648,0	1/1:30:0,30:0:0:30:1075:-88.285,-9.0309,0	0/1:23:4,19:4:140:19:680:-52.0843,0,-6.01273	1/1:7:0,7:0:0:7:248:-21.7871,-2.10721,0	1/1:27:2,25:2:72:25:900:-71.2397,-1.29602,0	0/1:219:107,112:107:3806:112:4001:-287.126,0,-276.443	0/1:237:112,125:112:3992:125:4452:-293.006,0,-286.546	0/1:52:37,15:37:1289:15:536:-30.6763,0,-100.581	0/1:3:1,2:1:36:2:72:-5.36506,0,-2.68614	0/1:159:96,63:96:3452:63:2257:-137.804,0,-261.807	1/1:31:0,31:0:0:31:1108:-91.6498,-9.33193,0	1/1:213:1,212:1:36:212:7581:-616.958,-60.5302,0	1/1:70:0,70:0:0:70:2481:-203.642,-21.0721,0	1/1:74:0,74:0:0:74:2606:-215.249,-22.2762,0	1/1:160:0,160:0:0:160:5709:-504.73,-48.1648,0	1/1:163:0,163:0:0:163:5773:-497.685,-49.0679,0	0/1:249:132,116:132:4731:116:4153:-267.86,0,-349.022	0/1:134:64,70:64:2258:70:2512:-167.189,0,-162.385	0/1:154:56,98:56:1996:98:3496:-242.249,0,-132.492	1/1:146:0,146:0:0:146:5219:-463.064,-43.9504,0	1/1:6:0,6:0:0:6:216:-18.1446,-1.80618,0	1/1:118:0,118:0:0:118:4225:-364.091,-35.5215,0	1/1:166:0,166:0:0:166:5919:-524.631,-49.971,0	1/1:19:0,19:0:0:19:684:-59.4172,-5.71957,0	1/1:185:1,183:1:36:183:6563:-535.85,-52.1491,0	1/1:88:1,87:1:36:87:3112:-250.913,-22.9014,0	1/1:15:0,15:0:0:15:540:-48.1618,-4.51545,0	0/1:10:1,9:1:36:9:324:-26.1704,0,-0.587975	1/1:140:0,140:0:0:140:4952:-407.717,-42.1442,0	1/1:118:0,118:0:0:118:4223:-347.604,-35.5215,0	1/1:17:0,17:0:0:17:602:-49.7894,-5.11751,0	1/1:156:0,156:0:0:156:5554:-492.879,-46.9607,0	1/1:254:0,254:0:0:254:9073:-746.298,-76.4616,0	0/1:72:18,54:18:644:54:1944:-135.549,0,-36.4683	1/1:107:0,107:0:0:107:3804:-313.751,-32.2102,0	1/1:245:0,245:0:0:245:8741:-718.403,-73.7524,0	1/1:191:7,184:7:252:184:6598:-517.677,-34.5257,0	1/1:40:0,40:0:0:40:1436:-117.667,-12.0412,0	1/1:81:0,81:0:0:81:2889:-248.361,-24.3834,0	0/1:53:24,29:24:860:29:1040:-76.4185,0,-61.7366	1/1:24:0,24:0:0:24:864:-71.0007,-7.22472,0	0/1:145:85,60:85:3052:60:2156:-141.596,0,-230.338	0/1:113:47,66:47:1684:66:2364:-170.201,0,-117.382	0/1:266:151,115:151:5379:115:4101:-256.056,0,-398.835	0/1:176:97,79:97:3441:79:2795:-177.293,0,-254.857	0/1:260:112,148:112:3999:148:5297:-378.581,0,-280.973	0/1:106:43,63:43:1548:63:2245:-161.978,0,-107.262	1/1:27:0,27:0:0:27:963:-82.9395,-8.12781,0	0/1:103:59,44:59:2124:44:1584:-99.8647,0,-158.779	0/1:176:100,75:100:3533:75:2700:-178.324,0,-262.877	0/1:336:196,137:196:7010:137:4875:-297.911,0,-527.166	0/1:96:52,44:52:1844:44:1572:-99.7958,0,-136.233	0/1:74:35,39:35:1260:39:1400:-94.0332,0,-90.8747	1/1:52:0,52:0:0:52:1852:-152.974,-15.6536,0	0/1:155:78,77:78:2787:77:2729:-176.504,0,-203.598	0/1:20:11,9:11:388:9:324:-22.3062,0,-29.0931	1/1:93:0,93:0:0:93:3328:-286.878,-27.9958,0	1/1:101:0,101:0:0:101:3615:-311.445,-30.404,0	1/1:39:0,39:0:0:39:1395:-115.539,-11.7402,0	0/1:111:36,75:36:1279:75:2688:-183.979,0,-81.685	0/1:112:67,45:67:2392:45:1616:-98.9489,0,-180.972	1/1:158:0,158:0:0:158:5642:-464.292,-47.5627,0	1/1:130:0,130:0:0:130:4648:-378.839,-39.1339,0
chr01	17018333	.	T	C	203359	PASS	AB=0.477285;ABP=28.561;AC=149;AF=0.792553;AN=188;AO=9573;CIGAR=1X;DP=12569;DPB=12569;DPRA=33.7769;EPP=20781.8;EPPR=6500.06;GTI=4;LEN=1;MEANALT=1.04301;MQM=59.9954;MQMR=59.9906;NS=94;NUMALT=1;ODDS=0.979361;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341927;QR=106620;RO=2992;RPL=9573;RPP=20790.5;RPPR=6500.06;RPR=0;RUN=1;SAF=1;SAP=20781.8;SAR=9572;SRF=0;SRP=6500.06;SRR=2992;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:66:0,66:0:0:66:2357:-212.387,-19.868,0	0/1:107:54,53:54:1917:53:1908:-139.787,0,-140.595	1/1:259:0,259:0:0:259:9225:-830.217,-77.9668,0	1/1:397:0,397:0:0:397:14210:-1278.66,-119.509,0	1/1:164:0,164:0:0:164:5862:-527.688,-49.3689,0	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:139:66,73:66:2329:73:2598:-192.222,0,-168.026	1/1:291:0,291:0:0:291:10394:-935.377,-87.5997,0	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:91:0,91:0:0:91:3213:-289.389,-27.3937,0	1/1:45:0,45:0:0:45:1586:-143.026,-13.5464,0	1/1:113:0,113:0:0:113:4056:-365.226,-34.0164,0	0/1:73:32,40:32:1148:40:1436:-107.504,0,-81.5959	1/1:62:0,62:0:0:62:2213:-199.433,-18.6639,0	0/1:71:38,33:38:1364:33:1188:-85.8555,0,-101.688	1/1:63:0,63:0:0:63:2251:-202.852,-18.9649,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1277	0/1:21:5,16:5:180:16:576:-45.8534,0,-10.2304	0/1:225:87,138:87:3073:138:4956:-378.456,0,-209.068	0/1:266:152,114:152:5413:114:4057:-285.242,0,-407.228	0/1:229:143,86:143:5070:86:3069:-207.502,0,-387.511	1/1:143:0,143:0:0:143:5091:-458.331,-43.0473,0	1/1:80:3,77:3:108:77:2745:-237.216,-14.0072,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	0/1:384:199,184:199:7093:184:6566:-475.366,0,-522.778	0/1:233:143,90:143:5104:90:3217:-219.607,0,-389.365	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:524:0,524:0:0:524:18718:-1684.19,-157.74,0	1/1:217:0,216:0:0:216:7675:-690.423,-65.0225,0	1/1:131:2,129:2:72:129:4625:-409.574,-32.5982,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	0/1:212:96,115:96:3444:115:4081:-303.597,0,-246.295	0/1:242:138,104:138:4909:104:3740:-263.95,0,-369.114	0/1:41:13,28:13:464:28:1008:-78.6941,0,-29.7553	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	0/1:271:131,140:131:4684:140:5001:-368.658,0,-340.142	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:328:0,328:0:0:328:11678:-1050.89,-98.7378,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:71:0,71:0:0:71:2541:-228.939,-21.3731,0	1/1:137:1,136:1:36:136:4847:-432.782,-37.6428,0	1/1:242:0,242:0:0:242:8665:-779.839,-72.8493,0	0/1:344:182,162:182:6484:162:5771:-415.948,0,-480.092	0/1:110:66,44:66:2334:44:1580:-109.378,0,-177.204	0/1:208:111,97:111:3945:97:3478:-250.617,0,-292.629	1/1:112:0,112:0:0:112:4007:-360.819,-33.7154,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:140:0,140:0:0:140:5017:-451.674,-42.1442,0	1/1:147:0,147:0:0:147:5228:-470.655,-44.2514,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:288:0,288:0:0:288:10263:-923.598,-86.6966,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:97:0,97:0:0:97:3479:-313.321,-29.1999,0	1/1:103:1,102:1:36:102:3635:-323.754,-27.4078,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:302:0,302:0:0:302:10749:-967.295,-90.9111,0	1/1:326:0,326:0:0:326:11589:-1042.88,-98.1358,0	0/1:46:20,26:20:701:26:928:-69.9909,0,-49.5643	1/1:154:0,154:0:0:154:5460:-491.527,-46.3586,0	1/1:326:2,324:2:68:324:11539:-1031.92,-91.6781,0	1/1:207:2,205:2:72:205:7351:-654.798,-55.4765,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:83:0,83:0:0:83:2972:-267.713,-24.9855,0	0/1:39:19,20:19:684:20:720:-53.3886,0,-50.1502	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:179:94,85:94:3360:85:3018:-217.965,0,-248.733	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/1:197:106,91:106:3751:91:3240:-232.516,0,-278.348	0/1:298:139,159:139:4937:159:5697:-423.139,0,-354.776	0/1:283:145,138:145:5200:138:4937:-359.282,0,-382.947	0/1:159:89,70:89:3184:70:2516:-178.828,0,-238.92	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:194:116,78:116:4137:78:2792:-193.121,0,-314.114	0/1:239:141,98:141:5010:98:3516:-244.703,0,-379.101	0/1:331:155,176:155:5517:176:6314:-468.71,0,-397.017	0/1:54:32,22:32:1136:22:792:-55.3501,0,-86.2933	0/1:63:35,28:35:1260:28:1000:-71.3505,0,-94.7406	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	0/1:151:75,76:75:2692:76:2713:-198.957,0,-197.069	0/1:26:15,11:15:540:11:381:-26.7939,0,-41.1098	1/1:60:0,60:0:0:60:2115:-190.614,-18.0618,0	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:105:52,53:52:1860:53:1908:-140.389,0,-136.071	0/1:80:51,29:51:1832:29:1044:-70.1924,0,-141.078	1/1:266:0,266:0:0:266:9492:-854.235,-80.074,0	1/1:106:0,106:0:0:106:3812:-343.276,-31.9092,0
chr01	17062182	.	T	A	47151.7	PASS	AB=0.513696;ABP=11.6946;AC=39;AF=0.207447;AN=188;AO=2772;CIGAR=1X;DP=10504;DPB=10504;DPRA=1.66119;EPP=6022.33;EPPR=16792.8;GTI=3;LEN=1;MEANALT=1;MQM=59.9906;MQMR=59.9856;NS=94;NUMALT=1;ODDS=0.214492;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99135;QR=276597;RO=7732;RPL=11;RPP=5927.17;RPPR=16585;RPR=2761;RUN=1;SAF=2761;SAP=5927.17;SAR=11;SRF=7708;SRP=16585;SRR=24;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1548:0:0:0,-13.2453,-139.61	0/1:196:110,86:110:3944:86:3057:-216.357,0,-296.149	0/0:109:109,0:109:3920:0:0:0,-32.8123,-352.991	0/0:274:273,1:273:9748:1:36:0,-78.8839,-873.673	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:160:79,81:79:2828:81:2904:-213.431,0,-206.594	0/0:106:106,0:106:3792:0:0:0,-31.9092,-340.375	0/0:117:117,0:117:4188:0:0:0,-35.2205,-377.102	0/0:146:145,1:145:5192:1:36:0,-40.3521,-463.821	0/0:71:70,1:70:2520:1:32:0,-18.1738,-223.852	0/0:92:92,0:92:3276:0:0:0,-27.6948,-295.061	0/1:78:38,40:38:1368:40:1432:-105.697,0,-99.9405	0/0:90:89,1:89:3176:1:36:0,-23.4944,-282.467	0/1:79:38,41:38:1364:41:1472:-108.995,0,-99.2793	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:99:97,2:97:3473:2:72:0,-22.9652,-305.943	0/1:75:35,40:35:1252:40:1436:-106.96,0,-90.4078	0/1:55:29,26:29:1021:26:913:-65.9274,0,-75.6436	0/1:228:98,130:98:3520:130:4660:-350.926,0,-248.374	0/1:181:82,99:82:2920:99:3548:-265.042,0,-208.55	0/1:65:21,44:21:752:44:1580:-122.925,0,-48.4393	0/0:93:90,3:90:3220:3:108:0,-17.9206,-279.947	0/0:115:113,2:113:4029:2:72:0,-27.7817,-355.961	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:422:227,195:227:8093:195:6989:-502.036,0,-601.356	0/1:307:173,134:173:6188:134:4780:-337.941,0,-464.602	0/0:48:47,1:47:1688:1:36:0,-10.8512,-148.608	0/0:372:372,0:372:13301:0:0:0,-111.983,-1196.21	0/0:146:146,0:146:5220:0:0:0,-43.9504,-469.939	0/0:129:129,0:129:4608:0:0:0,-38.8329,-414.885	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:265:134,131:134:4788:131:4704:-343.745,0,-351.305	0/1:137:53,84:53:1900:84:2957:-225.118,0,-130.037	0/1:107:56,51:56:2008:51:1832:-132.951,0,-148.783	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:216:110,106:110:3948:106:3800:-277.175,0,-290.488	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:154:154,0:154:5509:0:0:0,-46.3586,-495.935	0/0:115:114,1:114:4080:1:36:0,-31.0202,-363.788	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/0:170:169,1:169:6056:1:36:0,-47.5768,-541.544	0/1:247:150,97:150:5352:97:3476:-238.697,0,-407.458	0/1:143:78,65:78:2792:65:2336:-167.452,0,-208.473	0/1:195:94,101:94:3376:101:3632:-268.383,0,-245.354	0/0:140:140,0:140:5005:0:0:0,-42.1442,-450.596	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:149:148,1:148:5320:1:36:0,-41.2552,-475.333	0/0:62:61,1:61:2164:1:36:0,-15.0656,-191.429	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.616	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.471	0/0:117:116,1:116:4152:1:36:0,-31.6222,-370.265	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:211:209,2:209:7500:2:68:0,-57.0596,-668.582	0/0:176:176,0:176:6308:0:0:0,-52.9813,-567.812	0/1:126:73,53:73:2604:53:1863:-130.014,0,-196.679	0/0:56:56,0:56:1976:0:0:0,-16.8577,-178.115	0/0:186:186,0:186:6660:0:0:0,-55.9916,-599.478	0/0:120:117,3:117:4161:3:108:0,-26.0484,-364.599	0/0:42:41,1:41:1476:1:36:0,-9.04498,-129.538	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:108:54,54:54:1936:54:1940:-142.365,0,-142.005	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:79:28,51:28:992:51:1832:-141.379,0,-65.813	0/1:89:34,55:34:1220:55:1965:-150.332,0,-83.3151	0/1:122:55,67:55:1940:67:2380:-177.731,0,-138.151	0/1:209:71,138:71:2548:138:4937:-381.563,0,-166.655	0/1:104:43,61:43:1540:61:2131:-160.745,0,-107.586	0/1:161:96,65:96:3440:65:2332:-161.674,0,-261.347	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0497	0/1:139:59,80:59:2112:80:2864:-216.154,0,-148.506	0/1:136:70,66:70:2508:66:2368:-172.438,0,-185.032	0/1:249:90,159:90:3216:159:5697:-437.889,0,-214.707	0/1:109:48,61:48:1728:61:2192:-164.733,0,-122.993	0/1:102:42,60:42:1504:60:2152:-163.242,0,-104.95	0/0:103:102,1:102:3651:1:36:0,-27.4078,-325.195	0/1:179:93,86:93:3310:86:3065:-222.194,0,-244.234	0/1:47:24,23:24:856:23:828:-60.6957,0,-63.2127	0/0:85:84,1:84:3000:1:36:0,-21.9893,-266.634	0/0:70:69,1:69:2468:1:36:0,-17.4738,-218.776	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:115:65,50:65:2316:50:1796:-127.304,0,-174.082	0/1:74:24,50:24:856:50:1781:-138.295,0,-55.0849	0/0:113:111,2:111:3972:2:72:0,-27.1797,-350.834	0/0:116:111,5:111:3984:5:180:0,-18.3674,-342.197
chr01	17062196	.	A	G	159019	PASS	AB=0.480722;ABP=20.1734;AC=149;AF=0.792553;AN=188;AO=7642;CIGAR=1X;DP=10417;DPB=10417;DPRA=112;EPP=16588.7;EPPR=6026.67;GTI=4;LEN=1;MEANALT=1.01075;MQM=59.9825;MQMR=59.991;NS=94;NUMALT=1;ODDS=0.847041;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272270;QR=99425;RO=2774;RPL=0;RPP=16597.4;RPPR=6026.67;RPR=7642;RUN=1;SAF=7641;SAP=16588.7;SAR=1;SRF=2774;SRP=6026.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1411:-127.286,-12.0412,0	0/1:201:90,111:90:3198:111:3959:-295.995,0,-227.534	1/1:107:0,107:0:0:107:3817:-343.727,-32.2102,0	1/1:269:0,269:0:0:269:9592:-863.238,-80.9771,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:161:85,76:85:3044:76:2708:-195.499,0,-225.724	1/1:104:0,104:0:0:104:3681:-330.391,-31.3071,0	1/1:115:0,115:0:0:115:4096:-368.826,-34.6185,0	1/1:149:0,149:0:0:149:5256:-473.18,-44.8535,0	1/1:69:0,69:0:0:69:2466:-222.194,-20.7711,0	1/1:91:0,91:0:0:91:3220:-290.024,-27.3937,0	0/1:76:38,38:38:1364:38:1360:-99.8223,0,-100.182	1/1:88:0,88:0:0:88:3136:-282.467,-26.4906,0	0/1:77:41,36:41:1476:36:1292:-93.4045,0,-109.957	1/1:83:0,83:0:0:83:2947:-265.465,-24.9855,0	1/1:95:0,95:0:0:95:3392:-305.496,-28.5979,0	0/1:74:40,34:40:1440:34:1220:-87.8306,0,-107.622	0/1:55:26,29:26:936:29:1039:-77.2677,0,-68.0028	0/1:231:132,99:132:4732:99:3524:-247.834,0,-356.483	0/1:174:99,75:99:3548:75:2676:-188.707,0,-267.149	0/1:69:47,22:47:1688:22:788:-50.4737,0,-131.436	1/1:95:4,91:4:140:91:3233:-278.248,-15.6533,0	1/1:113:2,111:2:72:111:3974:-351.013,-27.1797,0	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	0/1:423:194,229:194:6956:229:8182:-609.06,0,-498.768	0/1:307:134,173:134:4800:173:6155:-461.637,0,-339.739	1/1:43:1,42:1:36:42:1477:-129.625,-9.34602,0	1/1:376:0,376:0:0:376:13390:-1204.28,-113.187,0	1/1:142:1,141:1:36:141:5064:-452.305,-39.148,0	1/1:127:0,127:0:0:127:4512:-406.25,-38.2308,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/1:264:133,131:133:4780:131:4653:-339.461,0,-350.883	0/1:136:82,54:82:2936:54:1911:-131.325,0,-223.534	0/1:108:53,55:53:1904:55:1972:-145.244,0,-139.126	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:218:106,112:106:3781:112:4000:-294.566,0,-274.864	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	1/1:157:0,157:0:0:157:5583:-502.597,-47.2617,0	1/1:110:0,110:0:0:110:3935:-354.342,-33.1133,0	1/1:81:0,81:0:0:81:2878:-259.258,-24.3834,0	1/1:95:0,95:0:0:95:3377:-304.146,-28.5979,0	1/1:168:1,167:1:36:167:5963:-533.18,-46.9748,0	0/1:250:103,147:103:3704:147:5190:-391.988,0,-258.303	0/1:143:66,77:66:2368:77:2759:-205.504,0,-170.331	0/1:195:102,93:102:3660:93:3312:-239.599,0,-270.902	1/1:139:0,139:0:0:139:4988:-449.067,-41.8432,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:149:1,148:1:36:148:5288:-472.458,-41.2552,0	1/1:58:1,57:1:36:57:2032:-179.554,-13.8615,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:112:0,112:0:0:112:3971:-357.581,-33.7154,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	1/1:85:0,85:0:0:85:3018:-271.851,-25.5876,0	1/1:111:0,111:0:0:111:3954:-356.052,-33.4143,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:207:0,207:0:0:207:7412:-667.126,-62.3132,0	1/1:175:0,175:0:0:175:6256:-563.136,-52.6803,0	0/1:126:52,74:52:1860:74:2636:-199.557,0,-129.75	1/1:58:0,58:0:0:58:2030:-182.969,-17.4597,0	1/1:189:0,189:0:0:189:6737:-606.32,-56.8947,0	1/1:118:2,116:2:72:116:4135:-365.499,-28.6848,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:83:0,83:0:0:83:2964:-266.994,-24.9855,0	0/1:100:49,51:49:1756:51:1818:-133.798,0,-128.221	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:80:51,29:51:1828:29:1016:-67.6655,0,-140.719	0/1:89:58,31:58:2076:31:1107:-73.1485,0,-160.319	0/1:120:69,51:69:2484:51:1803:-126.428,0,-187.689	0/1:211:139,72:139:4996:72:2576:-168.572,0,-386.268	0/1:104:62,42:62:2224:42:1508:-104.707,0,-169.102	0/1:161:66,95:66:2368:95:3408:-258.468,0,-164.912	1/1:16:0,16:0:0:16:576:-52.1726,-4.81648,0	0/1:135:81,54:81:2885:54:1932:-133.518,0,-219.246	0/1:134:63,70:63:2256:70:2471:-182.248,0,-162.906	0/1:249:159,90:159:5681:90:3205:-213.716,0,-436.452	0/1:108:61,47:61:2192:47:1680:-118.976,0,-165.034	0/1:102:60,42:60:2160:42:1512:-105.67,0,-163.962	1/1:101:0,101:0:0:101:3580:-322.407,-30.404,0	0/1:181:87,94:87:3112:94:3321:-244.623,0,-225.821	0/1:48:24,24:24:860:24:851:-62.46,0,-63.2724	1/1:82:0,82:0:0:82:2910:-262.136,-24.6845,0	1/1:69:0,69:0:0:69:2460:-221.654,-20.7711,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:115:51,64:51:1828:64:2275:-170.394,0,-130.182	0/1:69:50,19:50:1792:19:680:-40.7581,0,-140.791	1/1:108:0,108:0:0:108:3841:-345.888,-32.5112,0	1/1:113:0,113:0:0:113:4034:-363.248,-34.0164,0
chr01	18104826	.	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chr01	18181872	.	G	A	119398	PASS	AB=0.496382;ABP=3.40311;AC=148;AF=0.795699;AN=186;AO=5390;CIGAR=1X;DP=7143;DPB=7143;DPRA=19.3995;EPP=10638.4;EPPR=3434.85;GTI=6;LEN=1;MEANALT=1.01087;MQM=59.9922;MQMR=59.9909;NS=93;NUMALT=1;ODDS=0.216131;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192321;QR=62024;RO=1752;RPL=5244;RPP=10473.5;RPPR=3418.37;RPR=146;RUN=1;SAF=5370;SAP=11534.2;SAR=20;SRF=1750;SRP=3790.08;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:128:66,62:66:2336:62:2208:-160.453,0,-171.969	1/1:96:0,96:0:0:96:3416:-307.656,-28.8989,0	1/1:150:0,150:0:0:150:5367:-483.162,-45.1545,0	1/1:39:0,39:0:0:39:1393:-125.669,-11.7402,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:98:47,51:47:1675:51:1814:-134.039,0,-121.536	1/1:119:0,119:0:0:119:4268:-384.297,-35.8226,0	1/1:90:0,90:0:0:90:3216:-289.663,-27.0927,0	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0	1/1:50:0,50:0:0:50:1754:-158.14,-15.0515,0	1/1:65:0,65:0:0:65:2316:-208.701,-19.567,0	0/1:58:37,21:37:1320:21:752:-50.5465,0,-101.642	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:51:23,28:23:807:28:1000:-74.9628,0,-57.5966	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	0/1:59:25,34:25:884:34:1220:-92.346,0,-62.1176	0/1:51:27,24:27:960:24:860:-62.3693,0,-71.3637	0/1:102:57,45:57:2016:45:1604:-113.945,0,-151.006	0/1:101:66,35:66:2341:35:1260:-83.3015,0,-180.544	0/1:95:58,37:58:2059:37:1313:-89.8718,0,-156.983	1/1:73:3,70:3:90:70:2503:-217.087,-13.5772,0	0/1:50:6,44:6:203:44:1572:-126.72,0,-3.54968	1/1:55:0,55:0:0:55:1967:-177.304,-16.5567,0	0/1:275:137,138:137:4843:138:4896:-358.011,0,-353.244	0/1:148:76,72:76:2687:72:2558:-185.917,0,-197.524	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:131:1,130:1:36:130:4602:-410.75,-35.8367,0	1/1:143:0,143:0:0:143:5099:-459.055,-43.0473,0	1/1:54:0,54:0:0:54:1910:-172.176,-16.2556,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:238:113,125:113:4029:125:4441:-328.217,0,-291.153	0/1:117:65,52:65:2306:52:1860:-132.459,0,-172.58	0/1:66:29,37:29:1040:37:1328:-99.9543,0,-74.0464	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:118:58,60:58:2052:60:2140:-157.346,0,-149.428	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:83:0,83:0:0:83:2967:-267.263,-24.9855,0	1/1:69:0,69:0:0:69:2442:-220.035,-20.7711,0	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	1/1:85:0,85:0:0:85:3028:-272.752,-25.5876,0	1/1:57:0,57:0:0:57:2032:-183.153,-17.1587,0	0/1:146:87,59:87:3037:59:2108:-146.039,0,-229.608	0/1:68:33,35:33:1172:35:1251:-92.4242,0,-85.3175	0/1:97:50,47:50:1773:47:1684:-122.647,0,-130.651	1/1:81:0,81:0:0:81:2874:-258.897,-24.3834,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:89:0,89:0:0:89:3172:-285.706,-26.7917,0	1/1:39:0,38:0:0:38:1351:-121.617,-11.4391,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:79:0,79:0:0:79:2827:-254.612,-23.7814,0	1/1:45:1,44:1:32:44:1563:-137.762,-10.347,0	.:.:.:.:.:.:.:.	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:84:0,84:0:0:84:2996:-269.873,-25.2865,0	1/1:113:1,112:1:36:112:3990:-355.692,-30.4181,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:165:0,165:0:0:165:5882:-529.492,-49.67,0	1/1:204:0,204:0:0:204:7281:-655.342,-61.4101,0	0/1:26:13,13:13:459:13:464:-34.2707,0,-33.8173	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	1/1:135:2,133:2:72:133:4746:-420.46,-33.8023,0	1/1:74:0,74:0:0:74:2643:-238.116,-22.2762,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:75:0,75:0:0:75:2676:-241.086,-22.5773,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:94:47,47:47:1680:47:1676:-122.83,0,-123.19	0/1:57:28,29:28:996:29:1040:-76.7557,0,-72.7962	0/1:124:62,62:62:2175:62:2211:-161.927,0,-158.686	0/1:97:49,48:49:1721:48:1699:-123.995,0,-125.973	0/1:100:45,55:45:1612:55:1972:-147.652,0,-115.267	0/1:89:42,47:42:1508:47:1672:-123.976,0,-109.223	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:99:44,55:44:1576:55:1972:-147.953,0,-112.33	0/1:59:22,37:22:768:37:1324:-101.701,0,-51.6796	0/1:128:47,81:47:1668:81:2883:-221.175,0,-111.876	0/1:98:43,55:43:1526:55:1955:-146.724,0,-108.131	0/1:68:30,38:30:1063:38:1360:-102.231,0,-75.5108	1/1:95:0,95:0:0:95:3395:-305.765,-28.5979,0	0/1:154:78,76:78:2749:76:2702:-197.065,0,-201.236	0/1:30:16,14:16:564:14:504:-36.6672,0,-42.0594	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	0/1:73:41,32:41:1456:32:1139:-80.8432,0,-109.361	0/1:91:72,19:72:2521:19:684:-34.4966,0,-199.746	1/1:55:0,55:0:0:55:1947:-175.505,-16.5567,0	1/1:96:0,96:0:0:96:3432:-309.094,-28.8989,0
chr01	18181934	.	CCCCA	CCCCT	98942.3	PASS	AB=0.493324;ABP=4.11206;AC=150;AF=0.806452;AN=186;AO=4629;CIGAR=4M1X;DP=6106;DPB=6106;DPRA=0;EPP=9855.97;EPPR=3021.85;GTI=3;LEN=1;MEANALT=1.43011;MQM=59.9842;MQMR=59.9986;NS=93;NUMALT=1;ODDS=0.115949;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165155;QR=49927;RO=1426;RPL=4606;RPP=9855.97;RPPR=3021.85;RPR=23;RUN=1;SAF=0;SAP=10054.8;SAR=4629;SRF=0;SRP=3099.53;SRR=1426;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	0/1:38:27,11:27:962:11:396:-24.5436,0,-75.4574	1/1:111:0,108:0:0:108:3845:-345.887,-32.5112,0	1/1:97:0,96:0:0:96:3433:-308.822,-28.8989,0	1/1:28:0,28:0:0:28:991:-89.5042,-8.42884,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:65:28,37:28:985:37:1332:-100.615,0,-69.3963	1/1:82:0,80:0:0:80:2834:-255.02,-24.0824,0	1/1:73:0,73:0:0:73:2589:-233.258,-21.9752,0	1/1:67:0,67:0:0:67:2381:-214.546,-20.169,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:70:1,69:1:30:69:2468:-219.375,-18.0725,0	0/1:62:35,27:35:1219:27:972:-69.134,0,-91.347	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:62:36,25:36:1267:25:896:-62.2378,0,-95.6093	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:13:10,3:10:352:3:108:-6.16178,0,-28.1045	0/1:32:11,21:11:383:21:756:-58.7343,0,-25.1704	0/1:125:62,63:62:2165:63:2260:-166.034,0,-157.486	0/1:79:20,58:20:704:58:2057:-161.56,0,-39.8445	0/1:74:47,27:47:1657:27:968:-65.1611,0,-127.141	1/1:106:0,106:0:0:106:3781:-340.488,-31.9092,0	1/1:54:2,51:2:72:51:1816:-156.885,-9.4777,0	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	0/1:196:81,114:81:2854:114:4085:-308.767,0,-198.039	0/1:217:85,129:85:2971:129:4598:-349.099,0,-202.869	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:133:0,133:0:0:133:4718:-424.78,-40.037,0	1/1:69:0,68:0:0:68:2436:-219.135,-20.47,0	1/1:77:0,77:0:0:77:2721:-245.134,-23.1793,0	0/1:8:1,7:1:29:7:252:-20.6207,0,-0.491416	1/1:20:0,20:0:0:20:701:-63.4117,-6.0206,0	1/1:4:0,3:0:0:3:108:-9.71534,-0.90309,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:172:94,78:94:3332:78:2785:-199.113,0,-248.323	0/1:97:54,42:54:1894:42:1497:-105.872,0,-141.586	0/1:55:24,31:24:856:31:1104:-83.114,0,-60.8043	0/1:5:1,4:1:35:4:144:-11.8085,0,-1.99348	0/1:55:25,30:25:877:30:1080:-80.9566,0,-62.689	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:101:0,100:0:0:100:3584:-322.535,-30.103,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:109:0,109:0:0:109:3904:-351.553,-32.8123,0	1/1:101:0,93:0:0:93:3328:-299.391,-27.9958,0	0/1:115:73,42:73:2543:42:1500:-100.676,0,-194.501	0/1:80:35,43:35:1209:43:1502:-111.629,0,-85.2702	0/1:50:24,26:24:848:26:932:-69.1474,0,-61.5885	1/1:73:0,73:0:0:73:2588:-233.17,-21.9752,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:76:0,76:0:0:76:2717:-244.772,-22.8783,0	1/1:32:0,31:0:0:31:1104:-99.3109,-9.33193,0	.:.:.:.:.:.:.:.	1/1:87:1,86:1:30:86:3053:-272,-23.19,0	1/1:39:0,38:0:0:38:1349:-121.344,-11.4391,0	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:52:0,52:0:0:52:1845:-166.328,-15.6536,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:123:0,120:0:0:120:4301:-386.927,-36.1236,0	1/1:95:0,93:0:0:93:3313:-298.067,-27.9958,0	0/1:31:12,16:12:425:16:576:-43.4031,0,-29.8155	1/1:46:1,44:1:36:44:1572:-138.212,-10.268,0	1/1:107:0,104:0:0:104:3678:-330.925,-31.3071,0	1/1:134:0,134:0:0:134:4793:-431.518,-40.338,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:47:0,47:0:0:47:1654:-149.144,-14.1484,0	1/1:26:0,25:0:0:25:900:-80.9612,-7.52575,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:128:67,56:67:2363:56:1978:-140.905,0,-175.543	0/1:73:28,45:28:960:45:1620:-124.115,0,-64.7331	0/1:91:49,42:49:1704:42:1485:-106.549,0,-126.248	0/1:110:59,50:59:2051:50:1773:-126.679,0,-151.688	0/1:104:37,67:37:1280:67:2373:-182.515,0,-84.1897	0/1:62:30,32:30:1061:32:1140:-84.2453,0,-77.1372	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:69:39,29:39:1365:29:1040:-73.1617,0,-102.395	0/1:73:33,40:33:1158:40:1432:-107.202,0,-82.551	0/1:149:98,50:98:3444:50:1781:-115.659,0,-265.264	0/1:45:23,22:23:787:22:788:-57.6984,0,-57.597	0/1:50:27,22:27:929:22:788:-56.1483,0,-68.8246	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:89:42,47:42:1446:47:1688:-125.415,0,-103.638	0/1:19:10,9:10:358:9:324:-23.7863,0,-26.8433	1/1:63:0,63:0:0:63:2241:-201.952,-18.9649,0	1/1:74:0,74:0:0:74:2629:-236.856,-22.2762,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:95:51,44:51:1779:44:1576:-113.534,0,-131.792	0/1:58:43,15:43:1507:15:532:-30.7533,0,-118.462	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	1/1:95:0,95:0:0:95:3389:-305.224,-28.5979,0
chr01	18530766	.	T	C	39972	PASS	AB=0.505164;ABP=3.75044;AC=41;AF=0.218085;AN=188;AO=1784;CIGAR=1X;DP=7001;DPB=7001;DPRA=1.44398;EPP=8.6386;EPPR=185.456;GTI=0;LEN=1;MEANALT=1;MQM=52.8531;MQMR=59.6643;NS=94;NUMALT=1;ODDS=0.137813;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63292;QR=186291;RO=5216;RPL=0;RPP=3876.92;RPPR=11320.7;RPR=1784;RUN=1;SAF=858;SAP=8.6386;SAR=926;SRF=2940;SRP=186.56;SRR=2276;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:70:37,33:37:1320:33:1176:-83.6851,0,-97.9701	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.981	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.363	0/0:57:55,2:55:1955:2:72:0,-10.4165,-169.435	0/0:34:33,1:33:1188:1:36:0,-6.63674,-103.63	0/1:81:32,49:32:1113:49:1749:-132.402,0,-76.0401	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.592	0/0:81:81,0:81:2882:0:0:0,-24.3834,-258.432	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.13	0/0:121:120,1:120:4291:1:36:0,-32.8332,-382.748	0/0:151:150,0:150:5344:0:0:0,-45.1545,-480.736	0/1:121:76,45:76:2700:45:1603:-105.137,0,-206.818	0/0:132:132,0:132:4720:0:0:0,-39.736,-424.798	0/1:95:59,36:59:2120:36:1287:-86.6814,0,-162.456	0/0:113:113,0:113:4036:0:0:0,-34.0164,-363.202	0/0:127:127,0:127:4546:0:0:0,-38.2308,-409.048	0/1:62:34,28:34:1215:28:995:-69.077,0,-90.947	0/1:126:61,65:61:2188:65:2316:-168.88,0,-159.228	0/1:96:54,42:54:1936:42:1504:-105.94,0,-145.542	0/1:106:50,56:50:1764:56:1982:-145.156,0,-127.086	0/1:24:10,14:10:356:14:496:-37.5389,0,-25.1532	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:67:59,8:59:2120:8:288:-5.82596,0,-170.871	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:107:53,54:53:1887:54:1928:-140.857,0,-137.335	0/1:101:46,55:46:1648:55:1971:-144.087,0,-118.205	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.88	0/0:75:74,1:74:2619:1:36:0,-18.979,-232.331	0/0:37:37,0:37:1324:0:0:0,-11.1381,-118.971	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.963	0/0:15:15,0:15:515:0:0:0,-4.51545,-46.4733	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5034	1/1:55:5,50:5:176:50:1759:-142.408,-0.371631,0	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7227	0/1:207:141,66:141:5044:66:2351:-147.103,0,-391.776	0/1:41:16,25:16:576:25:891:-67.0654,0,-39.8328	0/1:141:58,83:58:2071:83:2918:-218.753,0,-144.186	1/1:48:1,47:1:36:47:1661:-146.129,-10.8512,0	0/1:84:41,43:41:1468:43:1535:-110.594,0,-106.411	0/0:82:80,2:80:2846:2:72:0,-18.0985,-249.707	0/0:90:89,1:89:3183:1:36:0,-23.4944,-283.078	0/0:147:147,0:147:5259:0:0:0,-44.2514,-473.333	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.503	0/0:47:46,1:46:1656:1:36:0,-10.5501,-145.723	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:70:25,45:25:888:45:1580:-120.456,0,-59.1669	0/1:46:27,19:27:968:19:671:-46.1883,0,-73.5838	0/1:69:40,29:40:1424:29:1023:-70.7164,0,-106.419	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.676	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:69:69,0:69:2454:0:0:0,-20.7711,-221.086	0/0:25:25,0:25:876:0:0:0,-7.52575,-79.1543	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.217	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.6973	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	1/1:58:2,56:2:72:56:1987:-172.144,-10.623,0	0/0:42:41,1:41:1463:1:36:0,-9.09474,-128.374	0/0:116:115,1:115:4107:1:36:0,-31.3281,-366.117	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.508	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.833	0/1:49:27,22:27:972:22:788:-55.9496,0,-73.0368	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6379	0/0:82:82,0:82:2931:0:0:0,-24.6845,-263.993	0/0:53:50,3:50:1775:3:108:0,-5.88582,-149.964	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.382	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.18	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.433	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:40:19,21:19:684:21:752:-54.9163,0,-49.8491	0/1:51:26,25:26:936:25:887:-63.912,0,-69.1893	0/1:96:46,50:46:1644:50:1796:-130.505,0,-119.337	0/1:69:34,35:34:1220:35:1229:-89.2764,0,-89.3357	0/1:93:54,39:54:1936:39:1392:-95.3919,0,-146.468	0/1:75:34,41:34:1220:41:1455:-106.677,0,-87.5296	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/1:67:32,35:32:1144:35:1248:-90.5761,0,-83.1005	0/1:70:38,32:38:1360:32:1144:-80.6329,0,-101.611	0/1:98:37,61:37:1328:61:2155:-161.574,0,-90.1853	0/1:89:50,39:50:1792:39:1374:-95.5494,0,-134.763	0/1:72:44,28:44:1576:28:992:-67.1796,0,-120.451	0/0:118:118,0:118:4215:0:0:0,-35.5215,-379.518	0/1:169:98,71:98:3504:71:2483:-171.132,0,-264.682	0/1:57:29,28:29:1044:28:1004:-72.2362,0,-77.1161	0/0:129:127,2:127:4526:2:72:0,-31.9961,-400.495	0/0:122:122,0:122:4326:0:0:0,-36.7257,-389.443	0/0:113:113,0:113:4051:0:0:0,-34.0164,-364.744	0/1:299:65,234:65:2324:234:8235:-649.867,0,-119.39	0/1:87:29,58:29:1036:58:2075:-159.552,0,-67.3455	0/0:30:30,0:30:1060:0:0:0,-9.0309,-95.7113	0/0:148:147,1:147:5248:1:36:0,-40.9542,-468.596
chr01	18548922	.	CGGCT	CGGCC	294599	PASS	AB=0.475138;ABP=40.9091;AC=151;AF=0.803191;AN=188;AO=11036;CIGAR=4M1X;DP=14857;DPB=14856.4;DPRA=0;EPP=23958.7;EPPR=8022.26;GTI=4;LEN=1;MEANALT=2.1383;MQM=59.9885;MQMR=59.9911;NS=94;NUMALT=1;ODDS=1.10691;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=390270;QR=128102;RO=3693;RPL=5868;RPP=99.424;RPPR=102.335;RPR=5168;RUN=1;SAF=5867;SAP=98.8738;SAR=5169;SRF=2052;SRP=102.335;SRR=1641;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:87:1,86:1:35:86:3012:-267.774,-22.691,0	0/1:260:148,110:148:5121:110:3876:-271.066,0,-383.076	1/1:211:1,202:1:30:202:7157:-641.139,-58.4113,0	1/1:249:0,247:0:0:247:8732:-785.653,-74.3544,0	1/1:120:0,119:0:0:119:4183:-376.314,-35.8226,0	1/1:126:0,125:0:0:125:4439:-399.322,-37.6288,0	0/1:194:99,93:99:3412:93:3331:-241.849,0,-249.144	1/1:305:2,301:2:65:301:10617:-949.287,-85.3536,0	1/1:188:0,186:0:0:186:6586:-592.488,-55.9916,0	1/1:170:1,160:1:36:160:5681:-507.814,-45.2272,0	1/1:119:1,118:1:33:118:4199:-374.794,-32.5234,0	1/1:149:0,149:0:0:149:5252:-472.821,-44.8535,0	0/1:128:74,53:74:2537:53:1862:-129.405,0,-190.133	1/1:116:0,115:0:0:115:4082:-367.228,-34.6185,0	0/1:137:70,66:70:2443:66:2338:-169.379,0,-178.828	1/1:107:0,107:0:0:107:3779:-340.31,-32.2102,0	1/1:115:0,113:0:0:113:3993:-359.243,-34.0164,0	0/1:73:35,37:35:1217:37:1316:-96.7371,0,-87.8285	0/1:49:31,18:31:1082:18:612:-40.6469,0,-82.9386	0/1:322:157,162:157:5465:162:5711:-417.724,0,-395.603	0/1:269:149,120:149:5196:120:4271:-303.59,0,-386.807	0/1:135:90,39:90:3160:39:1370:-84.4098,0,-245.44	1/1:208:2,203:2:64:203:7170:-639.285,-55.9529,0	1/1:209:11,196:11:387:196:6966:-591.832,-27.4587,0	1/1:178:0,174:0:0:174:6200:-557.795,-52.3792,0	0/1:457:238,217:238:8295:217:7705:-556.2,0,-609.298	0/1:401:215,184:215:7443:184:6527:-467.069,0,-549.495	1/1:34:0,33:0:0:33:1158:-104.224,-9.93399,0	1/1:332:0,328:0:0:328:11526:-1036.85,-98.7378,0	1/1:204:3,201:3:93:201:7096:-630.026,-52.7323,0	1/1:167:0,163:0:0:163:5809:-522.638,-49.0679,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:20:0,20:0:0:20:701:-63.4117,-6.0206,0	0/1:17:8,9:8:275:9:324:-24.3883,0,-19.9665	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:349:176,171:176:6097:171:6042:-439.191,0,-444.153	0/1:218:102,114:102:3546:114:4034:-297.945,0,-254.05	0/1:119:57,60:57:1972:60:2113:-154.858,0,-142.175	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:197:100,95:100:3475:95:3355:-243.109,0,-253.907	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:254:0,251:0:0:251:8861:-797.196,-75.5585,0	1/1:138:0,137:0:0:137:4836:-435.038,-41.2411,0	1/1:108:0,108:0:0:108:3788:-341.12,-32.5112,0	1/1:104:0,104:0:0:104:3732:-336.08,-31.3071,0	1/1:213:0,213:0:0:213:7599:-683.895,-64.1194,0	0/1:270:136,133:136:4723:133:4732:-344.861,0,-344.06	0/1:158:68,87:68:2368:87:3083:-230.718,0,-166.398	0/1:248:131,115:131:4560:115:3987:-284.606,0,-336.161	1/1:179:0,179:0:0:179:6340:-570.692,-53.8844,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:133:0,131:0:0:131:4633:-416.873,-39.4349,0	1/1:71:0,71:0:0:71:2526:-227.591,-21.3731,0	1/1:21:0,21:0:0:21:724:-65.4767,-6.32163,0	1/1:239:2,235:2:71:235:8334:-743.325,-64.9594,0	1/1:68:0,68:0:0:68:2394:-215.715,-20.47,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	0/1:25:17,8:17:593:8:275:-17.5577,0,-46.1703	1/1:167:1,166:1:36:166:5913:-528.635,-46.6737,0	1/1:174:0,173:0:0:173:6160:-554.141,-52.0782,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:234:0,233:0:0:233:8238:-741.077,-70.14,0	1/1:260:5,252:5:163:252:8942:-789.799,-62.6649,0	0/1:139:62,74:62:2141:74:2619:-194.714,0,-151.716	1/1:130:0,129:0:0:129:4561:-410.298,-38.8329,0	1/1:338:6,328:6:210:328:11543:-1019.52,-81.6458,0	1/1:223:5,217:5:174:217:7668:-674.176,-51.0852,0	1/1:82:1,81:1:31:81:2873:-255.708,-21.585,0	1/1:150:1,148:1:36:148:5242:-468.322,-41.615,0	1/1:112:0,112:0:0:112:3949:-355.603,-33.7154,0	1/1:39:0,36:0:0:36:1284:-115.522,-10.8371,0	0/1:163:89,74:89:3068:74:2628:-187.698,0,-227.287	0/1:165:85,78:85:2919:78:2751:-198.448,0,-213.562	0/1:306:139,164:139:4790:164:5805:-431.098,0,-339.801	0/1:311:146,165:146:5133:165:5807:-429.127,0,-368.501	0/1:226:123,101:123:4287:101:3583:-254.967,0,-318.308	0/1:252:134,117:134:4708:117:4172:-299.766,0,-347.99	1/1:23:0,22:0:0:22:768:-69.0783,-6.62266,0	0/1:167:88,78:88:3060:78:2758:-198.13,0,-225.302	0/1:199:112,85:112:3836:85:2986:-209.307,0,-285.784	0/1:338:159,178:159:5541:178:6278:-463.31,0,-397.021	0/1:129:48,77:48:1648:77:2706:-205.878,0,-110.697	0/1:118:67,50:67:2330:50:1779:-124.9,0,-174.469	1/1:115:1,113:1:34:113:3991:-356.037,-31.2035,0	0/1:183:83,100:83:2846:100:3436:-254.367,0,-201.288	0/1:46:27,19:27:903:19:664:-46.2371,0,-67.7279	1/1:122:0,122:0:0:122:4262:-383.76,-36.7257,0	1/1:100:0,100:0:0:100:3533:-318.181,-30.103,0	1/1:78:0,78:0:0:78:2765:-249.092,-23.4803,0	0/1:180:102,77:102:3509:77:2717:-190.53,0,-261.787	0/1:109:83,25:83:2869:25:896:-48.0893,0,-225.582	1/1:203:0,202:0:0:202:7151:-643.323,-60.8081,0	1/1:185:0,185:0:0:185:6509:-585.899,-55.6906,0
chr01	18912431	.	TGT	AGT,AGC	124146	PASS	AB=0.483353,0.515844;ABP=9.01081,8.44638;AC=153,35;AF=0.81383,0.18617;AN=188;AO=4434,1287;CIGAR=1X2M,1X1M1X;DP=5725;DPB=5725.33;DPRA=0,1.2803;EPP=9631.32,2797.7;EPPR=5.18177;GTI=2;LEN=1,3;MEANALT=1.41489,2.05556;MQM=59.8101,56.3007;MQMR=60;NS=94;NUMALT=2;ODDS=1.22072;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=158881,45421;QR=28;RO=1;RPL=4434,1287;RPP=9631.32,2797.7;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=9631.32,2797.7;SAR=4434,1287;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38,0:0:0:38,0:1368,0:-123.42,-11.4391,0,-123.42,-11.4391,-123.42	1/2:26:0,12,14:0:0:12,14:432,500:-76.3253,-41.0748,-37.4624,-35.6088,0,-31.3944	1/1:225:0,225,0:0:0:225,0:8031,0:-722.802,-67.7318,0,-722.802,-67.7318,-722.802	1/1:169:0,169,0:0:0:169,0:6064,0:-545.804,-50.8741,0,-545.804,-50.8741,-545.804	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/1:21:0,21,0:0:0:21,0:752,0:-67.9354,-6.32163,0,-67.9354,-6.32163,-67.9354	1/2:54:0,23,31:0:0:23,31:828,1085:-156.042,-88.4766,-81.5529,-67.9204,0,-58.5885	1/1:95:0,95,0:0:0:95,0:3403,0:-306.483,-28.5979,0,-306.483,-28.5979,-306.483	1/1:73:0,73,0:0:0:73,0:2628,0:-236.766,-21.9752,0,-236.766,-21.9752,-236.766	1/1:56:0,56,0:0:0:56,0:2012,0:-181.351,-16.8577,0,-181.351,-16.8577,-181.351	1/1:42:0,41,1:0:0:41,1:1468,36:-132.059,-12.3422,0,-129.207,-9.14056,-128.906	1/1:84:0,84,0:0:0:84,0:3006,0:-270.768,-25.2865,0,-270.768,-25.2865,-270.768	1/2:58:0,23,35:0:0:23,35:828,1250:-169.731,-102.169,-95.2452,-67.9204,0,-57.3844	1/1:42:0,42,0:0:0:42,0:1508,0:-135.879,-12.6433,0,-135.879,-12.6433,-135.879	1/2:60:0,31,29:0:0:31,29:1101,1036:-174.463,-84.7556,-75.4236,-90.0635,0,-81.3337	1/1:35:0,35,0:0:0:35,0:1260,0:-113.636,-10.5361,0,-113.636,-10.5361,-113.636	1/1:42:0,42,0:0:0:42,0:1495,0:-134.844,-12.6433,0,-134.844,-12.6433,-134.844	1/2:25:0,9,16:0:0:9,16:324,574:-73.6011,-47.1639,-44.4546,-26.7966,0,-21.9801	1/2:15:0,6,9:0:0:6,9:216,324:-44.3437,-26.7189,-24.9127,-17.9843,0,-15.2751	1/2:86:0,46,40:0:0:46,40:1652,1406:-249.471,-114.712,-100.865,-135.114,0,-123.073	1/2:121:0,61,60:0:0:61,60:2192,2116:-351.237,-172.497,-154.134,-179.095,0,-161.034	1/2:66:0,22,44:0:0:22,44:788,1558:-191.158,-126.893,-120.271,-64.6212,0,-51.3759	1/1:78:0,78,0:0:0:78,0:2796,0:-251.87,-23.4803,0,-251.87,-23.4803,-251.87	1/1:30:0,30,0:0:0:30,0:1076,0:-96.8817,-9.0309,0,-96.8817,-9.0309,-96.8817	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/2:98:0,54,44:0:0:54,44:1940,1537:-283.453,-125.242,-108.987,-158.564,0,-145.318	1/2:138:0,68,70:0:0:68,70:2432,2486:-400.447,-202.17,-181.7,-198.632,0,-177.56	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:128:0,128,0:0:0:128,0:4584,0:-412.663,-38.5318,0,-412.663,-38.5318,-412.663	1/1:86:0,86,0:0:0:86,0:3080,0:-277.365,-25.8886,0,-277.365,-25.8886,-277.365	1/1:58:0,58,0:0:0:58,0:2084,0:-187.825,-17.4597,0,-187.825,-17.4597,-187.825	1/1:13:0,13,0:0:0:13,0:468,0:-42.4581,-3.91339,0,-42.4581,-3.91339,-42.4581	1/1:8:0,8,0:0:0:8,0:288,0:-26.2658,-2.40824,0,-26.2658,-2.40824,-26.2658	1/2:7:0,3,4:0:0:3,4:108,137:-19.9581,-11.1346,-10.2315,-9.17208,0,-7.96796	1/1:11:0,11,0:0:0:11,0:396,0:-35.9818,-3.31133,0,-35.9818,-3.31133,-35.9818	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/2:123:0,49,74:0:0:49,74:1756,2632:-357.982,-214.766,-200.015,-143.574,0,-121.297	1/2:112:0,47,65:0:0:47,65:1676,2271:-321.388,-184.764,-170.616,-136.977,0,-117.41	1/2:47:0,16,31:0:0:16,31:576,1114:-138.211,-91.2122,-86.3957,-47.3585,0,-38.0266	1/1:2:0,2,0:0:0:2,0:72,0:-6.8351,-0.60206,0,-6.8351,-0.60206,-6.8351	1/2:92:0,52,39:0:0:52,39:1872,1377:-264.784,-112.036,-96.3828,-152.792,0,-141.051	1/1:40:0,40,0:0:0:40,0:1440,0:-129.895,-12.0412,0,-129.895,-12.0412,-129.895	1/1:106:1,105,0:1:28:105,0:3756,0:-335.434,-29.1095,0,-335.735,-31.6082,-337.953	1/1:33:0,33,0:0:0:33,0:1176,0:-106.146,-9.93399,0,-106.146,-9.93399,-106.146	1/1:29:0,29,0:0:0:29,0:1017,0:-91.8398,-8.72987,0,-91.8398,-8.72987,-91.8398	1/1:63:0,63,0:0:0:63,0:2238,0:-201.624,-18.9649,0,-201.624,-18.9649,-201.624	1/1:71:0,71,0:0:0:71,0:2548,0:-229.556,-21.3731,0,-229.556,-21.3731,-229.556	1/2:131:0,64,67:0:0:64,67:2304,2344:-378.316,-190.474,-171.208,-188.197,0,-168.028	1/2:71:0,40,31:0:0:40,31:1440,1054:-202.72,-85.2436,-73.2024,-117.823,0,-108.492	1/2:105:0,61,44:0:0:61,44:2184,1578:-306.716,-128.617,-110.255,-178.456,0,-165.211	1/1:95:0,95,0:0:0:95,0:3401,0:-306.302,-28.5979,0,-306.302,-28.5979,-306.302	1/1:14:0,14,0:0:0:14,0:496,0:-44.9743,-4.21442,0,-44.9743,-4.21442,-44.9743	1/1:72:0,72,0:0:0:72,0:2584,0:-232.807,-21.6742,0,-232.807,-21.6742,-232.807	1/1:73:0,73,0:0:0:73,0:2628,0:-236.766,-21.9752,0,-236.766,-21.9752,-236.766	1/1:18:0,18,0:0:0:18,0:633,0:-57.2951,-5.41854,0,-57.2951,-5.41854,-57.2951	1/1:105:0,104,0:0:0:104,0:3736,0:-336.187,-31.3071,0,-336.187,-31.3071,-336.187	1/1:23:0,23,0:0:0:23,0:815,0:-73.6708,-6.92369,0,-73.6708,-6.92369,-73.6708	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:6:0,2,4:0:0:2,4:72,144:-17.9806,-12.1058,-11.5037,-6.23466,0,-5.03054	1/1:58:0,58,0:0:0:58,0:2073,0:-186.836,-17.4597,0,-186.836,-17.4597,-186.836	1/1:78:0,78,0:0:0:78,0:2795,0:-251.693,-23.4803,0,-251.693,-23.4803,-251.693	1/1:3:0,3,0:0:0:3,0:108,0:-10.0727,-0.90309,0,-10.0727,-0.90309,-10.0727	1/1:101:0,101,0:0:0:101,0:3616,0:-325.636,-30.404,0,-325.636,-30.404,-325.636	1/1:104:0,104,0:0:0:104,0:3713,0:-334.277,-31.3071,0,-334.277,-31.3071,-334.277	1/1:57:0,57,0:0:0:57,0:2033,0:-183.232,-17.1587,0,-183.232,-17.1587,-183.232	1/1:73:0,73,0:0:0:73,0:2620,0:-236.043,-21.9752,0,-236.043,-21.9752,-236.043	1/1:102:0,102,0:0:0:102,0:3660,0:-329.591,-30.7051,0,-329.591,-30.7051,-329.591	1/1:77:0,77,0:0:0:77,0:2757,0:-248.316,-23.1793,0,-248.316,-23.1793,-248.316	1/1:26:0,26,0:0:0:26,0:936,0:-84.5579,-7.82678,0,-84.5579,-7.82678,-84.5579	1/1:38:0,38,0:0:0:38,0:1364,0:-123.059,-11.4391,0,-123.059,-11.4391,-123.059	1/1:31:0,31,0:0:0:31,0:1116,0:-100.749,-9.33193,0,-100.749,-9.33193,-100.749	1/1:19:0,19,0:0:0:19,0:679,0:-61.4364,-5.71957,0,-61.4364,-5.71957,-61.4364	1/2:93:0,48,45:0:0:48,45:1728,1598:-271.404,-130.48,-116.031,-141.281,0,-127.735	1/2:38:0,27,11:0:0:27,11:968,381:-110.259,-31.3001,-23.1723,-79.3086,0,-75.9973	1/2:92:0,52,40:0:0:52,40:1857,1399:-265.461,-114.061,-98.4073,-151.753,0,-139.711	1/2:98:0,59,38:0:0:59,38:2120,1330:-280.926,-108.061,-90.3004,-172.925,0,-161.486	1/2:83:0,38,45:0:0:38,45:1368,1590:-241.319,-129.694,-118.255,-111.982,0,-98.4353	1/2:43:0,20,23:0:0:20,23:720,808:-124.85,-66.0975,-60.0769,-59.1082,0,-52.1845	1/1:14:0,14,0:0:0:14,0:504,0:-45.6972,-4.21442,0,-45.6972,-4.21442,-45.6972	1/2:85:0,41,44:0:0:41,44:1472,1554:-246.853,-126.774,-114.432,-120.434,0,-107.189	1/2:60:0,22,38:0:0:22,38:788,1331:-172.8,-108.551,-101.928,-64.6041,0,-53.1649	1/2:108:0,43,65:0:0:43,65:1533,2304:-312.67,-187.711,-174.767,-125.314,0,-105.748	1/2:48:0,25,23:0:0:25,23:896,810:-137.699,-64.6203,-57.0946,-73.4299,0,-66.5062	1/2:64:0,27,37:0:0:27,37:968,1313:-186.202,-107.251,-99.1236,-79.3072,0,-68.1691	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/2:93:0,44,49:0:0:44,49:1580,1731:-270.082,-141.192,-127.947,-129.246,0,-114.496	1/2:16:0,10,6:0:0:10,6:360,216:-47.353,-17.9788,-14.9685,-29.734,0,-27.9278	1/1:46:0,46,0:0:0:46,0:1652,0:-148.968,-13.8474,0,-148.968,-13.8474,-148.968	1/1:45:0,45,0:0:0:45,0:1612,0:-145.366,-13.5464,0,-145.366,-13.5464,-145.366	1/1:35:0,35,0:0:0:35,0:1260,0:-113.704,-10.5361,0,-113.704,-10.5361,-113.704	1/2:82:0,43,39:0:0:43,39:1536,1388:-238.447,-113.349,-100.405,-125.454,0,-113.714	1/2:49:0,17,32:0:0:17,32:597,1109:-139.005,-90.4156,-85.2981,-48.9386,0,-39.3057	1/1:69:0,69,0:0:0:69,0:2464,0:-222.012,-20.7711,0,-222.012,-20.7711,-222.012	1/1:46:0,46,0:0:0:46,0:1652,0:-148.968,-13.8474,0,-148.968,-13.8474,-148.968
chr01	18956758	.	CTTT	TTTC,TTTT	188249	PASS	AB=0.480957,0.516753;ABP=18.1446,14.7245;AC=144,44;AF=0.765957,0.234043;AN=188;AO=6611,2491;CIGAR=1X2M1X,1X3M;DP=9137;DPB=9137;DPRA=0,1.33245;EPP=14107.8,5351.52;EPPR=7.35324;GTI=2;LEN=4,1;MEANALT=1.84043,2.2549;MQM=57.7854,36.7122;MQMR=60;NS=94;NUMALT=2;ODDS=0.0762415;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=234647,86658;QR=72;RO=2;RPL=29,7;RPP=14107.8,5351.52;RPPR=7.35324;RPR=6582,2484;RUN=1,1;SAF=6611,2491;SAP=14358.6,5412.15;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51,0:0:0:51,0:1791,0:-161.179,-15.3525,0,-161.179,-15.3525,-161.179	1/2:101:0,50,51:0:0:50,51:1797,1670:-268.065,-121.746,-106.695,-146.647,0,-131.295	1/2:183:0,108,75:0:0:108,75:3818,2442:-488.168,-177.889,-145.377,-310.599,0,-288.021	1/1:231:0,226,2:0:0:226,2:8013,72:-720.485,-68.0328,0,-714.989,-62.515,-714.387	1/2:96:0,46,50:0:0:46,50:1615,1765:-262.403,-130.989,-117.142,-131.752,0,-116.7	1/2:60:0,23,37:0:0:23,37:818,1207:-154.438,-87.8118,-80.8881,-66.9587,0,-55.8206	1/1:130:0,130,0:0:0:130,0:4616,0:-414.457,-39.1339,0,-414.457,-39.1339,-414.457	1/2:193:0,84,107:0:0:84,107:2964,3474:-493.733,-253.135,-227.848,-240.717,0,-208.507	1/2:80:0,40,40:0:0:40,40:1422,1307:-211.097,-95.4481,-83.4069,-115.975,0,-103.933	1/1:60:0,60,0:0:0:60,0:2125,0:-191.356,-18.0618,0,-191.356,-18.0618,-191.356	1/1:60:0,60,0:0:0:60,0:2126,0:-191.484,-18.0618,0,-191.484,-18.0618,-191.484	1/2:52:0,21,31:0:0:21,31:747,1009:-134.037,-73.5188,-67.1972,-60.8484,0,-51.5164	1/1:81:0,81,0:0:0:81,0:2886,0:-259.678,-24.3834,0,-259.678,-24.3834,-259.678	1/1:100:0,98,1:0:0:98,1:3465,36:-311.583,-29.5009,0,-308.916,-26.8179,-308.615	1/1:72:0,72,0:0:0:72,0:2570,0:-231.464,-21.6742,0,-231.464,-21.6742,-231.464	1/2:52:0,24,28:0:0:24,28:860,979:-142.663,-72.558,-65.3333,-70.4455,0,-62.0167	1/1:101:0,97,0:0:0:97,0:3428,0:-307.756,-29.1999,0,-307.756,-29.1999,-307.756	1/1:63:0,63,0:0:0:63,0:2260,0:-202.8,-18.9649,0,-202.8,-18.9649,-202.8	1/1:44:0,43,0:0:0:43,0:1523,0:-136.7,-12.9443,0,-136.7,-12.9443,-136.7	1/2:194:0,111,83:0:0:111,83:3952,2944:-546.524,-224.98,-191.566,-321.887,0,-296.901	1/2:69:0,27,42:0:0:27,42:959,1502:-189.604,-111.53,-103.402,-78.4183,0,-65.7751	1/2:123:0,34,89:0:0:34,89:1195,3166:-343.629,-246.573,-236.338,-97.4037,0,-70.6121	1/1:74:0,74,0:0:0:74,0:2622,0:-236.163,-22.2762,0,-236.163,-22.2762,-236.163	1/1:117:0,116,1:0:0:116,1:4055,36:-363.491,-34.9195,0,-360.823,-31.9215,-360.522	1/1:44:0,44,0:0:0:44,0:1569,0:-140.958,-13.2453,0,-140.958,-13.2453,-140.958	1/2:282:0,140,141:0:0:140,141:4975,4964:-790.739,-385.442,-343.297,-405.345,0,-362.9	1/1:202:0,200,0:0:0:200,0:7096,0:-637.885,-60.206,0,-637.885,-60.206,-637.885	1/1:41:0,41,0:0:0:41,0:1468,0:-132.227,-12.3422,0,-132.227,-12.3422,-132.227	1/2:260:0,142,118:0:0:142,118:5034,4217:-738.567,-328.782,-286.035,-410.133,0,-374.612	1/2:62:0,33,29:0:0:33,29:1176,1009:-170.716,-74.9608,-65.0268,-96.0915,0,-87.3616	1/2:152:0,75,76:0:0:75,76:2644,2701:-420.843,-205.675,-183.098,-215.151,0,-192.273	1/2:5:0,2,3:0:0:2,3:72,108:-14.2191,-8.33418,-7.73212,-6.23275,0,-5.32966	1/1:15:0,15,0:0:0:15,0:524,0:-47.2488,-4.51545,0,-47.2488,-4.51545,-47.2488	1/1:4:0,4,0:0:0:4,0:143,0:-13.1279,-1.20412,0,-13.1279,-1.20412,-13.1279	1/1:13:0,12,1:0:0:12,1:430,33:-38.7062,-3.61236,0,-36.3125,-0.914311,-36.0115	1/2:10:0,6,4:0:0:6,4:215,132:-27.4486,-9.89247,-8.08629,-17.8792,0,-16.6751	1/2:197:0,102,95:0:0:102,95:3620,3403:-560.272,-265.368,-234.663,-295.252,0,-266.655	1/2:229:0,121,107:0:0:121,107:4274,3767:-626.244,-278.515,-242.09,-347.815,0,-315.605	1/1:59:0,58,0:0:0:58,0:2038,0:-182.977,-17.4597,0,-182.977,-17.4597,-182.977	1/2:6:0,4,2:0:0:4,2:143,72:-17.3409,-5.66609,-4.46197,-12.0138,0,-11.4117	1/1:129:0,129,0:0:0:129,0:4600,0:-413.837,-38.8329,0,-413.837,-38.8329,-413.837	1/1:38:0,38,0:0:0:38,0:1353,0:-121.907,-11.4391,0,-121.907,-11.4391,-121.907	1/1:106:0,106,0:0:0:106,0:3772,0:-339.235,-31.9092,0,-339.235,-31.9092,-339.235	1/1:88:0,88,0:0:0:88,0:3123,0:-281.177,-26.4906,0,-281.177,-26.4906,-281.177	1/2:64:0,23,41:0:0:23,41:810,1428:-174.295,-108.351,-101.427,-66.2869,0,-53.9446	1/2:126:0,53,73:0:0:53,73:1893,2597:-356.706,-202.377,-186.423,-154.679,0,-132.704	1/1:121:0,119,0:0:0:119,0:4246,0:-381.317,-35.8226,0,-381.317,-35.8226,-381.317	1/1:162:0,161,0:0:0:161,0:5740,0:-516.132,-48.4658,0,-516.132,-48.4658,-516.132	1/1:107:0,106,0:0:0:106,0:3754,0:-337.567,-31.9092,0,-337.567,-31.9092,-337.567	1/1:153:0,152,0:0:0:152,0:5392,0:-483.337,-45.7566,0,-483.337,-45.7566,-483.337	1/2:148:0,66,82:0:0:66,82:2358,2900:-417.138,-225.173,-205.305,-192.314,0,-167.63	1/1:6:0,6,0:0:0:6,0:216,0:-19.7849,-1.80618,0,-19.7849,-1.80618,-19.7849	1/1:130:0,129,0:0:0:129,0:4593,0:-412.603,-38.8329,0,-412.603,-38.8329,-412.603	1/1:46:0,45,0:0:0:45,0:1605,0:-144.413,-13.5464,0,-144.413,-13.5464,-144.413	1/2:21:0,13,8:0:0:13,8:466,263:-57.4509,-19.4368,-15.5234,-38.3357,0,-35.9275	1/2:70:0,41,29:0:0:41,29:1448,1030:-194.747,-76.8508,-64.5086,-118.234,0,-109.504	1/1:32:0,32,0:0:0:32,0:1119,0:-100.964,-9.63296,0,-100.964,-9.63296,-100.964	1/2:9:0,7,2:0:0:7,2:248,72:-26.1711,-5.96147,-3.85426,-20.557,0,-19.9549	1/1:14:0,14,0:0:0:14,0:503,0:-45.6046,-4.21442,0,-45.6046,-4.21442,-45.6046	1/1:59:0,59,0:0:0:59,0:2084,0:-187.499,-17.7608,0,-187.499,-17.7608,-187.499	1/2:153:0,71,82:0:0:71,82:2538,2882:-426.485,-219.78,-198.407,-207.05,0,-182.366	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:204:0,202,0:0:0:202,0:7161,0:-643.284,-60.8081,0,-643.284,-60.8081,-643.284	1/2:205:0,85,119:0:0:85,119:3022,4225:-567.753,-321.702,-296.114,-246.038,0,-210.215	1/1:71:0,70,1:0:0:70,1:2464,36:-221.622,-21.0721,0,-218.955,-18.0741,-218.654	1/2:94:1,44,49:1:36:44,49:1550,1751:-256.422,-130.56,-120.252,-123.211,0,-111.398	1/2:261:0,142,117:0:0:142,117:4999,4124:-720.235,-314.061,-271.315,-406.283,0,-371.062	1/2:135:0,41,94:0:0:41,94:1454,3339:-372.959,-254.552,-242.21,-118.755,0,-90.4584	1/1:27:0,27,0:0:0:27,0:962,0:-86.8719,-8.12781,0,-86.8719,-8.12781,-86.8719	1/2:75:0,34,41:0:0:34,41:1218,1338:-196.815,-97.5604,-87.3254,-99.5845,0,-87.2423	1/2:95:0,48,47:0:0:48,47:1724,1688:-271.838,-131.219,-116.77,-140.969,0,-126.821	1/1:9:0,9,0:0:0:9,0:316,0:-28.7788,-2.70927,0,-28.7788,-2.70927,-28.7788	1/2:123:0,63,59:0:0:63,59:2246,1928:-322.698,-140.092,-121.127,-182.633,0,-164.873	1/2:49:0,21,28:0:0:21,28:755,922:-128.841,-67.3523,-61.0307,-61.8225,0,-53.3936	1/2:155:0,78,77:0:0:78,77:2772,2728:-427.629,-202.271,-178.79,-225.698,0,-202.519	1/1:131:0,131,0:0:0:131,0:4665,0:-419.859,-39.4349,0,-419.859,-39.4349,-419.859	1/1:185:0,185,0:0:0:185,0:6566,0:-590.252,-55.6906,0,-590.252,-55.6906,-590.252	1/2:78:0,45,33:0:0:45,33:1614,1087:-210.747,-79.258,-65.7117,-131.813,0,-121.879	1/2:6:0,4,2:0:0:4,2:130,65:-15.5514,-5.04597,-3.84185,-10.8119,0,-10.2098	1/1:105:0,104,1:0:0:104,1:3694,36:-332.045,-31.3071,0,-329.378,-28.3091,-329.077	1/2:96:0,46,50:0:0:46,50:1625,1632:-251.135,-118.979,-105.132,-132.482,0,-117.43	1/1:240:0,240,0:0:0:240,0:8536,0:-767.343,-72.2472,0,-767.343,-72.2472,-767.343	1/1:111:0,110,0:0:0:110,0:3936,0:-352.797,-33.1133,0,-352.797,-33.1133,-352.797	1/2:59:1,22,36:1:36:22,36:785,1277:-158.13,-94.5354,-90.8508,-60.9465,0,-53.047	1/1:87:0,87,0:0:0:87,0:3100,0:-279.108,-26.1896,0,-279.108,-26.1896,-279.108	1/1:154:0,152,1:0:0:152,1:5399,36:-485.441,-45.7566,0,-482.693,-42.9888,-482.392	1/1:33:0,33,0:0:0:33,0:1163,0:-104.62,-9.93399,0,-104.62,-9.93399,-104.62	1/1:72:0,72,0:0:0:72,0:2561,0:-229.959,-21.6742,0,-229.959,-21.6742,-229.959	1/2:57:0,33,24:0:0:33,24:1171,778:-151.956,-56.5914,-46.6574,-95.6844,0,-88.4597	1/2:63:0,34,29:0:0:34,29:1187,1030:-173.057,-76.5805,-66.3454,-96.8129,0,-88.0831	1/2:110:0,56,54:0:0:56,54:1973,1920:-303.233,-142.652,-125.794,-160.92,0,-144.665	1/2:147:0,48,99:0:0:48,99:1706,3531:-407.87,-268.907,-254.458,-139.311,0,-109.509	1/1:62:0,62,0:0:0:62,0:2189,0:-196.815,-18.6639,0,-196.815,-18.6639,-196.815	1/1:87:0,86,0:0:0:86,0:3059,0:-275.107,-25.8886,0,-275.107,-25.8886,-275.107
chr01	18956882	.	AGTCCTCTCA	GGTCCTCTCA,GGTCTCTCA	210107	PASS	AB=0.491324,0.496804;ABP=6.58976,3.49615;AC=143,45;AF=0.760638,0.239362;AN=188;AO=7354,2732;CIGAR=1X9M,1X2M1D6M;DP=10203;DPB=9927;DPRA=0,1.38089;EPP=15833.3,5831.7;EPPR=0;GTI=3;LEN=1,9;MEANALT=2.62766,3.21569;MQM=59.8288,53.3038;MQMR=0;NS=94;NUMALT=2;ODDS=0.248401;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=260256,92058;QR=0;RO=0;RPL=16,12;RPP=15833.3,5831.7;RPPR=0;RPR=7338,2720;RUN=1,1;SAF=0,0;SAP=15972,5935.47;SAR=7354,2732;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49,0:0:0:49,0:1728,0:-155.554,-14.7505,0,-155.554,-14.7505,-155.554	1/2:170:0,89,79:0:0:89,79:3123,2672:-469.514,-215.472,-188.681,-254.026,0,-230.245	1/2:163:0,81,82:0:0:81,82:2896,2752:-458.463,-222.319,-197.935,-236.49,0,-211.806	1/1:265:0,261,0:0:0:261,0:9289,0:-835.207,-78.5688,0,-835.207,-78.5688,-835.207	1/2:72:0,33,38:0:0:33,38:1170,1306:-201.105,-105.792,-95.8581,-95.4005,0,-83.9614	1/2:75:0,44,29:0:0:44,29:1559,974:-205.466,-78.4538,-65.2085,-127.014,0,-118.284	1/1:143:0,138,2:0:0:138,2:4891,64:-439.997,-41.5421,0,-434.845,-36.4059,-434.243	1/2:175:0,85,86:0:0:85,86:3004,2908:-479.719,-235.062,-209.474,-244.683,0,-218.795	1/2:107:0,49,57:0:0:49,57:1744,1913:-296.688,-154.54,-139.79,-142.202,0,-125.044	1/1:132:0,130,0:0:0:130,0:4642,0:-417.486,-39.1339,0,-417.486,-39.1339,-417.486	1/1:29:0,29,0:0:0:29,0:1008,0:-91.0281,-8.72987,0,-91.0281,-8.72987,-91.0281	1/2:71:0,42,27:0:0:42,27:1471,922:-194.2,-74.5065,-61.8632,-119.707,0,-111.58	1/1:91:0,91,0:0:0:91,0:3167,0:-285.232,-27.3937,0,-285.232,-27.3937,-285.232	1/1:60:0,58,0:0:0:58,0:2030,0:-182.495,-17.4597,0,-182.495,-17.4597,-182.495	1/1:43:0,43,0:0:0:43,0:1509,0:-136.098,-12.9443,0,-136.098,-12.9443,-136.098	1/2:54:0,35,19:0:0:35,19:1223,657:-152.973,-53.4858,-42.9497,-99.8333,0,-94.1137	1/1:63:0,62,0:0:0:62,0:2177,0:-195.842,-18.6639,0,-195.842,-18.6639,-195.842	1/1:71:0,71,0:0:0:71,0:2521,0:-227.11,-21.3731,0,-227.11,-21.3731,-227.11	1/1:31:0,31,0:0:0:31,0:1086,0:-98.0457,-9.33193,0,-98.0457,-9.33193,-98.0457	1/2:179:0,99,79:0:0:99,79:3519,2659:-501.701,-214.926,-185.124,-286.839,0,-263.057	1/2:184:0,82,98:0:0:82,98:2926,3276:-503.219,-264.798,-240.114,-238.472,0,-208.972	1/2:181:0,68,111:0:0:68,111:2416,3690:-494.932,-298.138,-277.668,-196.853,0,-163.439	1/1:61:0,61,0:0:0:61,0:2175,0:-195.959,-18.3628,0,-195.959,-18.3628,-195.959	1/1:156:0,150,5:0:0:150,5:5308,151:-477.491,-45.1545,0,-465.427,-33.1371,-463.922	1/1:88:0,85,0:0:0:85,0:3033,0:-272.937,-25.5876,0,-272.937,-25.5876,-272.937	1/2:320:0,172,146:0:0:172,146:6135,4887:-895.27,-395.175,-343.398,-500.189,0,-456.239	1/1:185:0,184,0:0:0:184,0:6500,0:-584.549,-55.3895,0,-584.549,-55.3895,-584.549	1/1:30:0,29,0:0:0:29,0:1025,0:-92.3073,-8.72987,0,-92.3073,-8.72987,-92.3073	1/2:295:0,147,140:0:0:147,140:5176,4747:-805.86,-384.478,-340.226,-421.409,0,-379.265	1/2:196:0,89,105:0:0:89,105:3162,3538:-543.569,-285.974,-259.182,-257.621,0,-226.012	1/2:187:0,82,102:0:0:82,102:2919,3365:-509.455,-271.538,-246.853,-237.949,0,-207.244	1/2:10:0,1,7:0:0:1,7:36,226:-21.1121,-18.1718,-17.8708,-2.93742,0,-0.830207	1/1:17:0,17,0:0:0:17,0:604,0:-54.6906,-5.11751,0,-54.6906,-5.11751,-54.6906	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:4:0,2,2:0:0:2,2:72,72:-12.0877,-6.21226,-5.6102,-6.23466,0,-5.6326	1/2:5:0,3,2:0:0:3,2:108,62:-14.1202,-5.27773,-4.37464,-9.17208,0,-8.57002	1/2:200:0,88,109:0:0:88,109:3094,3725:-553.421,-301.57,-275.08,-251.874,0,-219.061	1/2:242:0,118,119:0:0:118,119:4203,4060:-671.245,-328.662,-293.14,-342.623,0,-306.801	1/1:43:0,43,0:0:0:43,0:1504,0:-135.635,-12.9443,0,-135.635,-12.9443,-135.635	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:139:0,138,1:0:0:138,1:4911,36:-441.783,-41.5421,0,-438.851,-38.2517,-438.55	1/1:27:0,27,0:0:0:27,0:925,0:-83.5568,-8.12781,0,-83.5568,-8.12781,-83.5568	1/1:176:0,173,1:0:0:173,1:6107,29:-549.386,-52.0782,0,-547.08,-49.795,-546.779	1/1:54:0,54,0:0:0:54,0:1908,0:-171.994,-16.2556,0,-171.994,-16.2556,-171.994	1/2:54:0,30,24:0:0:30,24:1046,761:-146.47,-61.3835,-52.3526,-85.4175,0,-78.1928	1/2:97:0,46,51:0:0:46,51:1632,1741:-274.22,-141.554,-127.707,-133.014,0,-117.661	1/1:166:0,161,0:0:0:161,0:5727,0:-515.22,-48.4658,0,-515.22,-48.4658,-515.22	1/1:230:0,227,0:0:0:227,0:8021,0:-721.37,-68.3338,0,-721.37,-68.3338,-721.37	1/1:154:0,153,0:0:0:153,0:5411,0:-486.759,-46.0576,0,-486.759,-46.0576,-486.759	1/1:134:0,132,0:0:0:132,0:4663,0:-419.532,-39.736,0,-419.532,-39.736,-419.532	1/2:256:0,133,122:0:0:133,122:4746,4154:-723.548,-336.634,-296.597,-386.991,0,-350.265	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:210:0,204,0:0:0:204,0:7236,0:-650.924,-61.4101,0,-650.924,-61.4101,-650.924	1/1:62:0,61,0:0:0:61,0:2134,0:-191.966,-18.3628,0,-191.966,-18.3628,-191.966	1/2:15:0,13,2:0:0:13,2:468,58:-43.1454,-4.89897,-0.985583,-38.5453,0,-37.9433	1/2:150:0,82,66:0:0:82,66:2903,2183:-412.55,-176.196,-151.512,-236.416,0,-216.548	1/1:40:0,39,0:0:0: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chr01	19080058	.	TA	CA,CG	119074	PASS	AB=0.484651,0.513431;ABP=8.34316,7.09327;AC=150,36;AF=0.806452,0.193548;AN=186;AO=4224,1345;CIGAR=1X1M,2X;DP=5577;DPB=5577.5;DPRA=0,1.33448;EPP=9175.31,2923.64;EPPR=7.35324;GTI=5;LEN=1,2;MEANALT=1.51613,2.11905;MQM=59.9858,59.9539;MQMR=53;NS=93;NUMALT=2;ODDS=0.653806;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=150485,47105;QR=72;RO=2;RPL=4223,1345;RPP=9166.63,2923.64;RPPR=7.35324;RPR=1,0;RUN=1,1;SAF=4223,1345;SAP=9166.63,2923.64;SAR=1,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/2:59:0,33,26:0:0:33,26:1169,910:-169.616,-74.3861,-64.4521,-95.5815,0,-87.7547	1/1:74:0,74,0:0:0:74,0:2627,0:-236.676,-22.2762,0,-236.676,-22.2762,-236.676	1/1:109:0,109,0:0:0:109,0:3882,0:-349.573,-32.8123,0,-349.573,-32.8123,-349.573	1/1:23:0,23,0:0:0:23,0:805,0:-72.7675,-6.92369,0,-72.7675,-6.92369,-72.7675	1/1:12:0,11,1:0:0:11,1:381,36:-34.2619,-3.31133,0,-31.3234,-0.0140851,-31.0224	1/2:37:0,17,19:0:0:17,19:604,651:-102.051,-52.8272,-47.7097,-49.2135,0,-43.494	1/1:64:0,64,0:0:0:64,0:2291,0:-206.451,-19.2659,0,-206.451,-19.2659,-206.451	1/1:42:0,42,0:0:0:42,0:1504,0:-135.655,-12.6433,0,-135.655,-12.6433,-135.655	1/1:39:0,38,1:0:0:38,1:1364,36:-122.701,-11.4391,0,-119.763,-8.1419,-119.462	1/1:66:0,66,0:0:0:66,0:2356,0:-212.299,-19.868,0,-212.299,-19.868,-212.299	1/1:105:0,105,0:0:0:105,0:3751,0:-337.79,-31.6082,0,-337.79,-31.6082,-337.79	1/2:72:0,42,30:0:0:42,30:1458,1044:-203.326,-85.2348,-72.5915,-118.438,0,-109.407	1/1:70:0,70,0:0:0:70,0:2468,0:-222.35,-21.0721,0,-222.35,-21.0721,-222.35	1/2:65:0,36,29:0:0:36,29:1284,1038:-189.674,-85.0046,-74.1675,-105.026,0,-96.2965	1/1:69:0,69,0:0:0:69,0:2444,0:-220.214,-20.7711,0,-220.214,-20.7711,-220.214	1/1:49:1,48,0:1:36:48,0:1699,0:-149.637,-11.1919,0,-149.938,-14.4494,-152.839	1/2:42:0,20,22:0:0:20,22:705,785:-121.749,-64.3515,-58.3309,-57.7522,0,-51.1295	1/2:31:0,14,17:0:0:14,17:491,585:-87.8121,-47.853,-43.6386,-40.3067,0,-35.1892	1/2:98:0,56,42:0:0:56,42:1999,1479:-283.731,-120.759,-103.901,-163.325,0,-150.682	1/2:51:0,27,24:0:0:27,24:963,833:-146.568,-68.0611,-59.9333,-78.8581,0,-71.6334	1/2:67:0,26,41:0:0:26,41:932,1440:-193.568,-117.552,-109.725,-76.3721,0,-64.0298	1/1:65:0,64,1:0:0:64,1:2300,36:-206.901,-19.2659,0,-203.964,-15.9687,-203.662	1/2:31:0,28,3:0:0:28,3:996,106:-90.1586,-8.98601,-0.557167,-81.526,0,-80.623	1/1:49:0,49,0:0:0:49,0:1760,0:-158.684,-14.7505,0,-158.684,-14.7505,-158.684	1/2:123:0,70,52:0:0:70,52:2516,1834:-354.59,-149.327,-128.254,-205.26,0,-189.606	1/2:121:0,57,64:0:0:57,64:2032,2226:-346.978,-181.337,-164.178,-165.994,0,-146.728	1/1:29:0,29,0:0:0:29,0:1016,0:-91.749,-8.72987,0,-91.749,-8.72987,-91.749	1/1:190:0,190,0:0:0:190,0:6811,0:-613.059,-57.1957,0,-613.059,-57.1957,-613.059	1/1:90:0,90,0:0:0:90,0:3202,0:-288.402,-27.0927,0,-288.402,-27.0927,-288.402	1/1:78:0,78,0:0:0:78,0:2800,0:-252.24,-23.4803,0,-252.24,-23.4803,-252.24	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:6:0,1,5:0:0:1,5:36,175:-17.5271,-14.588,-14.287,-3.29724,0,-1.79209	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:186:0,97,89:0:0:97,89:3426,3071:-528.832,-249.829,-220.63,-279.351,0,-252.56	1/2:68:0,23,45:0:0:23,45:826,1591:-197.315,-129.932,-123.009,-67.7401,0,-54.1938	1/2:42:0,18,24:0:0:18,24:633,825:-118.867,-67.3381,-61.9196,-51.8765,0,-44.6518	.:.:.:.:.:.:.:.	1/2:57:0,31,26:0:0:31,26:1108,907:-164.463,-74.116,-64.7841,-90.6991,0,-82.8723	1/1:28:0,28,0:0:0:28,0:996,0:-89.9549,-8.42884,0,-89.9549,-8.42884,-89.9549	1/1:108:0,108,0:0:0:108,0:3868,0:-348.315,-32.5112,0,-348.315,-32.5112,-348.315	1/1:66:0,66,0:0:0:66,0:2337,0:-210.588,-19.868,0,-210.588,-19.868,-210.588	1/1:71:0,71,0:0:0:71,0:2540,0:-228.851,-21.3731,0,-228.851,-21.3731,-228.851	1/1:42:0,42,0:0:0:42,0:1500,0:-135.295,-12.6433,0,-135.295,-12.6433,-135.295	1/1:64:0,64,0:0:0:64,0:2267,0:-204.29,-19.2659,0,-204.29,-19.2659,-204.29	1/2:125:0,59,66:0:0:59,66:2112,2301:-359.714,-187.479,-169.718,-172.588,0,-152.72	1/2:48:0,22,26:0:0:22,26:788,895:-137.303,-73.0329,-66.4102,-64.6221,0,-56.7954	1/2:100:0,46,54:0:0:46,54:1641,1915:-290.145,-156.37,-142.522,-134.131,0,-117.875	1/1:50:0,50,0:0:0:50,0:1773,0:-159.852,-15.0515,0,-159.852,-15.0515,-159.852	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:64:0,64,0:0:0:64,0:2296,0:-206.901,-19.2659,0,-206.901,-19.2659,-206.901	1/1:55:0,55,0:0:0:55,0:1955,0:-176.225,-16.5567,0,-176.225,-16.5567,-176.225	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:86:0,86,0:0:0:86,0:3049,0:-274.638,-25.8886,0,-274.638,-25.8886,-274.638	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:11:0,6,5:0:0:6,5:216,18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chr01	19080690	.	AAGTT	CAGTC,CAGTT	1.01938e+06	PASS	AB=0.438254,0.558184;ABP=1323.16,1175.24;AC=94,94;AF=0.5,0.5;AN=188;AO=17471,22252;CIGAR=1X3M1X,1X4M;DP=39865;DPB=39865;DPRA=0,0;EPP=37940.8,48305.2;EPPR=26.8965;GTI=0;LEN=5,1;MEANALT=3.19149,3.19149;MQM=59.9023,59.9132;MQMR=58.7273;NS=94;NUMALT=2;ODDS=73.3135;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=68,0;PQR=0;PRO=0;QA=608926,793331;QR=343;RO=11;RPL=8983,11959;RPP=33.4645,273.864;RPPR=3.20771;RPR=8488,10293;RUN=1,1;SAF=8983,11961;SAP=33.4645,275.166;SAR=8488,10291;SRF=5;SRP=3.20771;SRR=6;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:144:0,99,44:0:0:99,44:3399,1561:-403.273,-127.292,-97.4901,-276.089,0,-262.844	1/2:662:0,239,420:0:0:239,420:8340,15066:-1907.19,-1228.85,-1156.91,-678.405,0,-551.972	1/2:490:0,323,165:0:0:323,165:11146,5936:-1389.84,-484.382,-387.149,-905.523,0,-855.853	1/2:813:0,441,372:0:0:441,372:15196,13281:-2317.4,-1083.08,-950.33,-1234.67,0,-1122.68	1/2:221:0,104,116:0:0:104,116:3605,4137:-629.911,-337.23,-305.922,-292.673,0,-257.754	1/2:354:0,159,194:0:0:159,194:5591,6921:-1019.39,-564.308,-516.444,-455.182,0,-396.782	1/2:784:1,201,578:1:36:201,578:7060,20633:-2253.22,-1679.1,-1621.53,-571.522,0,-400.465	1/2:628:0,395,232:0:0:395,232:13853,8284:-1802.69,-675.37,-556.463,-1127.31,0,-1057.47	1/2:343:0,218,124:0:0:218,124:7546,4417:-972.993,-359.764,-294.139,-613.241,0,-575.914	1/2:331:0,229,99:0:0:229,99:7985,3539:-937.996,-288.589,-219.653,-649.434,0,-619.632	1/2:202:0,129,72:0:0:129,72:4519,2579:-578.021,-210.325,-171.493,-367.691,0,-346.017	1/2:335:1,169,165:1:36:169,165:5884,5863:-952.971,-474.811,-426.875,-475.515,0,-428.783	1/2:251:0,88,163:0:0:88,163:3063,5809:-722.818,-473.757,-447.267,-249.411,0,-200.343	1/2:260:0,179,81:0:0:179,81:6222,2873:-740.281,-234.423,-180.539,-506.21,0,-481.826	1/2:363:1,90,271:1:36:90,271:3129,9647:-1037.36,-783.267,-759.112,-251.446,0,-172.804	1/2:336:0,162,172:0:0:162,172:5701,6124:-963.205,-499.122,-450.355,-464.077,0,-412.3	1/2:239:0,160,79:0:0:160,79:5610,2791:-684.155,-227.634,-179.469,-456.872,0,-433.091	1/2:281:0,78,203:0:0:78,203:2740,7179:-807.995,-584.982,-561.502,-223.365,0,-162.256	1/2:157:0,39,118:0:0:39,118:1357,4185:-451.603,-341.266,-329.526,-110.686,0,-75.1645	1/2:850:0,251,598:0:0:251,598:8773,21332:-2452.31,-1738.67,-1663.11,-713.631,0,-533.615	1/2:542:0,186,355:0:0:186,355:6449,12677:-1557.68,-1033.51,-977.517,-524.216,0,-417.351	1/2:395:0,82,311:0:0:82,311:2871,11120:-1140.32,-906.733,-882.048,-233.612,0,-139.991	1/2:412:0,246,166:0:0:246,166:8653,5926:-1187.84,-483.476,-409.422,-704.718,0,-654.747	1/2:513:0,272,239:0:0:272,239:9496,8529:-1467.66,-695.264,-613.383,-772.39,0,-700.444	1/2:232:0,165,67:0:0:165,67:5694,2380:-656.806,-194.242,-144.572,-462.916,0,-442.747	1/2:1527:0,366,1152:0:0:366,1152:12711,41170:-4389.23,-3356.22,-3246.04,-1033.05,0,-686.263	1/2:708:1,219,484:1:22:219,484:7634,17272:-2026.65,-1406.11,-1341.86,-619.241,0,-475.219	1/2:148:0,96,52:0:0:96,52:3339,1860:-423.493,-152.026,-123.127,-271.821,0,-256.167	1/2:927:0,620,305:0:0:620,305:21596,10893:-2644.24,-888.121,-701.482,-1756.14,0,-1664.32	1/2:580:0,379,199:0:0:379,199:13219,7095:-1653.42,-578.345,-464.254,-1075.07,0,-1015.17	1/2:686:0,423,260:0:0:423,260:14806,9280:-1961.18,-756.577,-629.241,-1204.63,0,-1126.37	1/2:35:0,17,18:0:0:17,18:600,648:-102.089,-53.2333,-48.1158,-49.2119,0,-43.7934	1/2:74:0,24,50:0:0:24,50:840,1784:-214.133,-145.791,-138.567,-68.6937,0,-53.6422	1/2:19:0,4,15:0:0:4,15:140,531:-54.9962,-43.6065,-42.4023,-11.7405,0,-7.22501	1/2:18:0,12,6:0:0:12,6:426,216:-52.6914,-17.9843,-14.372,-35.0652,0,-33.259	1/2:51:0,24,27:0:0:24,27:852,968:-148.729,-79.3096,-72.0848,-69.7759,0,-61.6481	1/2:778:0,253,523:0:0:253,523:8887,18568:-2236.17,-1512.89,-1436.73,-723.295,0,-565.857	1/2:756:0,194,554:0:0:194,554:6748,19761:-2159.16,-1610.57,-1552.17,-548.628,0,-381.858	1/2:248:0,77,171:0:0:77,171:2685,6084:-714.512,-496.146,-472.967,-218.717,0,-167.241	1/2:16:1,2,13:1:22:2,13:72,468:-42.2212,-36.6474,-37.7142,-4.33576,0,-2.05467	1/2:640:0,196,443:0:0:196,443:6767,15818:-1839.33,-1289.56,-1230.56,-549.765,0,-416.408	1/2:185:0,95,90:0:0:95,90:3323,3199:-531.377,-261.04,-232.442,-270.69,0,-243.597	1/2:567:0,348,217:0:0:348,217:12016,7682:-1601.97,-625.735,-520.977,-976.228,0,-910.904	1/2:317:0,213,103:0:0:213,103:7484,3678:-909.033,-299.996,-235.877,-609.17,0,-578.164	1/2:352:0,176,176:0:0:176,176:6121,6240:-1006.39,-508.718,-455.737,-498.022,0,-445.041	1/2:504:2,225,276:2:72:225,276:7895,9841:-1438.18,-796.302,-734.445,-636.631,0,-559.422	1/2:463:0,287,175:0:0:287,175:10018,6223:-1321.85,-507.149,-420.753,-814.718,0,-762.038	1/2:849:0,220,622:0:0:220,622:7661,22197:-2432.48,-1809.51,-1743.29,-622.981,0,-435.741	1/2:593:0,164,426:0:0:164,426:5678,15208:-1701.05,-1239.62,-1190.25,-461.492,0,-333.253	1/2:575:1,200,370:1:35:200,370:6988,13205:-1641.81,-1073.67,-1016.32,-565.597,0,-457.064	1/2:716:0,335,379:0:0:335,379:11601,13556:-2048.22,-1105.42,-1004.57,-942.835,0,-828.745	1/2:12:0,8,4:0:0:8,4:261,144:-33.1618,-12.1095,-9.70126,-21.4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chr01	19414185	.	A	C	102755	PASS	AB=0.779471;ABP=848.977;AC=158;AF=0.840426;AN=188;AO=4037;CIGAR=1X;DP=4331;DPB=4331;DPRA=0;EPP=3760.43;EPPR=611.29;GTI=21;LEN=1;MEANALT=1.02128;MQM=46.62;MQMR=27.8459;NS=94;NUMALT=1;ODDS=0.861827;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143407;QR=9986;RO=292;RPL=3340;RPP=3760.43;RPPR=611.29;RPR=697;RUN=1;SAF=4037;SAP=8769.24;SAR=0;SRF=292;SRP=637.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57:0:0:57:2032:-175.956,-17.1587,0	0/1:22:4,18:4:144:18:639:-50.0772,0,-3.86377	1/1:86:0,86:0:0:86:3080:-271.29,-25.8886,0	1/1:152:0,152:0:0:152:5380:-476.775,-45.7566,0	1/1:25:0,25:0:0:25:885:-78.8982,-7.52575,0	1/1:26:0,26:0:0:26:932:-82.1336,-7.82678,0	0/1:32:7,25:7:248:25:875:-68.0773,0,-4.32503	1/1:84:0,84:0:0:84:2973:-261.948,-25.2865,0	1/1:102:0,102:0:0:102:3644:-319.409,-30.7051,0	1/1:65:0,65:0:0:65:2317:-205.145,-19.567,0	1/1:68:0,68:0:0:68:2389:-212.624,-20.47,0	1/1:97:0,96:0:0:96:3386:-298.646,-28.8989,0	1/1:29:3,26:3:95:26:928:-74.767,-2.19305,0	1/1:40:0,40:0:0:40:1424:-124.865,-12.0412,0	0/1:30:6,24:6:203:24:851:-67.3522,0,-6.72859	1/1:47:0,47:0:0:47:1688:-150.056,-14.1484,0	1/1:19:0,19:0:0:19:663:-57.7732,-5.71957,0	1/1:15:0,15:0:0:15:540:-48.0913,-4.51545,0	0/1:14:2,12:2:68:12:428:-33.9999,0,-1.30396	0/1:64:12,52:12:398:52:1852:-145.134,0,-8.57891	0/1:53:9,44:9:312:44:1568:-122.73,0,-3.74751	0/1:28:12,16:12:424:16:576:-43.3504,0,-21.1982	1/1:94:0,94:0:0:94:3364:-298.226,-28.2968,0	1/1:42:1,41:1:36:41:1459:-128.256,-11.1466,0	1/1:36:0,36:0:0:36:1287:-114.495,-10.8371,0	0/1:94:21,73:21:736:73:2587:-203.446,0,-20.53	0/1:37:10,27:10:320:27:964:-73.613,0,-7.78265	1/1:36:0,36:0:0:36:1274:-112.428,-10.8371,0	1/1:144:0,144:0:0:144:5122:-457.36,-43.3483,0	1/1:51:0,51:0:0:51:1815:-161.533,-15.3525,0	1/1:56:0,56:0:0:56:2004:-177.247,-16.8577,0	1/1:11:0,11:0:0:11:388:-33.195,-3.31133,0	1/1:16:0,16:0:0:16:567:-50.8022,-4.81648,0	1/1:3:0,3:0:0:3:104:-9.17766,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.0081,-1.20412,0	1/1:13:0,13:0:0:13:468:-41.2482,-3.91339,0	0/1:115:24,91:24:810:91:3250:-256.072,0,-25.2003	0/1:28:9,19:9:293:19:680:-51.4686,0,-11.7237	1/1:32:3,29:3:104:29:1014:-81.6534,-3.02299,0	0/1:2:1,1:1:36:1:36:-2.95656,0,-2.04654	0/1:32:7,25:7:240:25:879:-68.363,0,-6.28196	1/1:33:0,33:0:0:33:1179:-104.146,-9.93399,0	1/1:82:0,82:0:0:82:2932:-257.968,-24.6845,0	1/1:37:0,37:0:0:37:1314:-115.842,-11.1381,0	1/1:48:0,48:0:0:48:1710:-151.335,-14.4494,0	1/1:85:0,85:0:0:85:3020:-270.114,-25.5876,0	1/1:96:0,96:0:0:96:3400:-300.168,-28.8989,0	0/1:44:9,35:9:320:35:1228:-96.7719,0,-11.2476	0/1:18:3,15:3:100:15:532:-42.568,0,-0.906061	0/1:52:9,43:9:308:43:1531:-120.52,0,-4.93389	1/1:61:0,61:0:0:61:2177:-194.122,-18.3628,0	1/1:10:0,10:0:0:10:356:-32.0548,-3.0103,0	1/1:39:0,39:0:0:39:1400:-122.857,-11.7402,0	1/1:42:0,42:0:0:42:1504:-134.555,-12.6433,0	1/1:10:0,10:0:0:10:356:-31.1225,-3.0103,0	1/1:37:0,37:0:0:37:1315:-116.614,-11.1381,0	1/1:43:1,42:1:36:42:1484:-128.932,-10.2081,0	1/1:4:0,4:0:0:4:137:-11.7681,-1.20412,0	1/1:15:1,14:1:32:14:489:-40.9922,-1.6692,0	1/1:62:0,62:0:0:62:2216:-197.505,-18.6639,0	1/1:80:0,80:0:0:80:2848:-254.061,-24.0824,0	1/1:5:0,5:0:0:5:180:-16.4623,-1.50515,0	1/1:91:0,91:0:0:91:3208:-286.751,-27.3937,0	1/1:40:0,40:0:0:40:1432:-126.99,-12.0412,0	1/1:40:1,39:1:32:39:1400:-120.826,-9.5383,0	1/1:42:0,42:0:0:42:1478:-132.476,-12.6433,0	1/1:65:2,63:2:68:63:2245:-192.868,-13.1092,0	1/1:67:0,67:0:0:67:2396:-212.526,-20.169,0	1/1:27:0,27:0:0:27:944:-83.0748,-8.12781,0	1/1:14:0,14:0:0:14:495:-43.5228,-4.21442,0	1/1:49:0,49:0:0:49:1741:-156.389,-14.7505,0	1/1:12:0,12:0:0:12:430:-38.5266,-3.61236,0	0/1:41:9,32:9:312:32:1131:-87.482,0,-6.60973	0/1:33:9,24:9:312:24:844:-64.0235,0,-10.8651	0/1:85:14,71:14:476:71:2515:-195.855,0,-3.83919	0/1:40:14,26:14:484:26:936:-71.5866,0,-18.8331	0/1:46:12,34:12:405:34:1199:-91.3664,0,-14.3746	0/1:21:4,17:4:136:17:604:-46.9442,0,-3.02181	1/1:12:0,12:0:0:12:421:-36.4289,-3.61236,0	0/1:35:8,27:8:246:27:964:-74.5575,0,-6.3624	1/1:52:5,46:5:167:46:1642:-133.274,-6.39303,0	0/1:55:19,36:19:668:36:1270:-95.4058,0,-29.9398	0/1:15:2,13:2:68:13:468:-37.4292,0,-0.431916	0/1:25:4,21:4:140:21:733:-57.914,0,-1.85911	1/1:37:0,37:0:0:37:1301:-116.296,-11.1381,0	0/1:91:21,70:21:726:70:2472:-192.559,0,-22.1485	0/1:11:2,9:2:68:9:324:-25.6849,0,-0.330036	1/1:56:0,56:0:0:56:1976:-172.76,-16.8577,0	1/1:59:0,59:0:0:59:2069:-181.252,-17.7608,0	1/1:31:0,31:0:0:31:1112:-99.0384,-9.33193,0	0/1:53:7,46:7:239:46:1608:-125.858,0,-1.15688	0/1:31:5,26:5:176:26:902:-71.3833,0,-3.98664	1/1:34:0,34:0:0:34:1199:-107.265,-10.235,0	1/1:117:0,117:0:0:117:4184:-372.866,-35.2205,0
chr01	19506901	.	CTT	CTC,TTC	90925.1	PASS	AB=0.441057,0.556402;ABP=62.3992,57.3898;AC=151,35;AF=0.811828,0.188172;AN=186;AO=3209,1097;CIGAR=2M1X,1X1M1X;DP=4318;DPB=4318;DPRA=0,1.53043;EPP=6971.27,2385.12;EPPR=5.18177;GTI=4;LEN=1,3;MEANALT=1.48387,2.13514;MQM=54.2702,41.3099;MQMR=60;NS=93;NUMALT=2;ODDS=0.277053;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=114600,38414;QR=36;RO=1;RPL=0,0;RPP=6971.27,2385.12;RPPR=5.18177;RPR=3209,1097;RUN=1,1;SAF=3209,1097;SAP=6971.27,2385.12;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25,0:0:0:25,0:884,0:-79.509,-7.52575,0,-79.509,-7.52575,-79.509	1/2:34:0,16,18:0:0:16,18:568,637:-95.9528,-49.7855,-44.9691,-46.514,0,-41.0955	1/1:165:0,163,0:0:0:163,0:5821,0:-521.333,-49.0679,0,-521.333,-49.0679,-521.333	1/1:96:0,96,0:0:0:96,0:3440,0:-309.07,-28.8989,0,-309.07,-28.8989,-309.07	1/1:31:0,31,0:0:0:31,0:1116,0:-100.358,-9.33193,0,-100.358,-9.33193,-100.358	1/1:19:0,19,0:0:0:19,0:684,0:-61.7291,-5.71957,0,-61.7291,-5.71957,-61.7291	1/2:81:0,47,34:0:0:47,34:1684,1186:-230.824,-93.6675,-79.5191,-137.503,0,-127.268	1/1:37:0,37,0:0:0:37,0:1326,0:-119.073,-11.1381,0,-119.073,-11.1381,-119.073	1/1:52:0,52,0:0:0:52,0:1860,0:-166.864,-15.6536,0,-166.864,-15.6536,-166.864	1/1:54:0,54,0:0:0:54,0:1924,0:-172.939,-16.2556,0,-172.939,-16.2556,-172.939	1/1:14:0,14,0:0:0:14,0:504,0:-44.4706,-4.21442,0,-44.4706,-4.21442,-44.4706	1/1:56:0,56,0:0:0:56,0:1987,0:-178.356,-16.8577,0,-178.356,-16.8577,-178.356	1/2:44:0,25,19:0:0:25,19:896,658:-124.865,-52.028,-44.5023,-73.1815,0,-67.4619	1/1:16:0,16,0:0:0:16,0:567,0:-51.2724,-4.81648,0,-51.2724,-4.81648,-51.2724	1/2:39:0,14,25:0:0:14,25:504,873:-109.785,-68.6863,-64.4718,-41.4507,0,-33.925	1/1:23:0,23,0:0:0:23,0:819,0:-73.7826,-6.92369,0,-73.7826,-6.92369,-73.7826	1/1:13:0,12,0:0:0:12,0:423,0:-37.7789,-3.61236,0,-37.7789,-3.61236,-37.7789	1/2:16:0,6,10:0:0:6,10:216,352:-45.3544,-27.771,-25.9648,-17.9346,0,-14.9243	1/2:15:0,7,8:0:0:7,8:252,278:-42.4763,-21.9596,-19.8524,-20.8639,0,-18.4556	1/2:68:0,27,40:0:0:27,40:956,1418:-187.593,-109.789,-101.662,-77.9157,0,-65.8745	1/2:72:0,32,40:0:0:32,40:1148,1408:-203.719,-110.345,-100.712,-93.7234,0,-81.6822	1/2:85:0,11,74:0:0:11,74:396,2611:-241.385,-209.083,-205.772,-32.6599,0,-10.3837	1/1:43:0,42,1:0:0:42,1:1504,36:-135.01,-12.6433,0,-132.159,-9.44159,-131.858	1/1:37:0,37,0:0:0:37,0:1332,0:-119.758,-11.1381,0,-119.758,-11.1381,-119.758	1/1:26:0,26,0:0:0:26,0:928,0:-83.3327,-7.82678,0,-83.3327,-7.82678,-83.3327	1/2:91:0,29,60:0:0:29,60:1044,2086:-250.094,-164.99,-156.26,-85.1741,0,-67.1123	1/2:136:0,76,59:0:0:76,59:2720,2069:-382.346,-161.377,-138.498,-220.967,0,-203.206	1/1:28:0,28,0:0:0:28,0:1008,0:-90.8981,-8.42884,0,-90.8981,-8.42884,-90.8981	1/1:105:0,105,0:0:0:105,0:3735,0:-336.141,-31.6082,0,-336.141,-31.6082,-336.141	1/1:67:1,66,0:1:36:66,0:2340,0:-206.493,-16.5707,0,-206.794,-19.868,-209.732	1/1:49:0,49,0:0:0:49,0:1752,0:-157.789,-14.7505,0,-157.789,-14.7505,-157.789	1/1:3:0,3,0:0:0:3,0:104,0:-9.69137,-0.90309,0,-9.69137,-0.90309,-9.69137	1/1:7:0,7,0:0:0:7,0:252,0:-22.9963,-2.10721,0,-22.9963,-2.10721,-22.9963	1/2:6:0,2,4:0:0:2,4:72,144:-17.5366,-11.6745,-11.0724,-6.21747,0,-5.01335	1/1:5:0,5,0:0:0:5,0:180,0:-16.4448,-1.50515,0,-16.4448,-1.50515,-16.4448	1/1:6:0,6,0:0:0:6,0:216,0:-19.7408,-1.80618,0,-19.7408,-1.80618,-19.7408	1/2:170:0,78,92:0:0:78,92:2788,3187:-481.525,-254.419,-230.938,-227.456,0,-199.761	1/2:32:0,13,19:0:0:13,19:468,664:-89.4937,-51.4813,-47.5679,-38.3602,0,-32.6406	1/2:21:0,10,11:0:0:10,11:360,380:-58.6778,-29.3754,-26.3651,-29.6461,0,-26.3347	.:.:.:.:.:.:.:.	1/2:74:0,35,39:0:0:35,39:1244,1385:-208.152,-106.92,-96.3841,-101.578,0,-89.8383	1/1:9:0,9,0:0:0:9,0:320,0:-29.1033,-2.70927,0,-29.1033,-2.70927,-29.1033	1/1:33:0,33,0:0:0:33,0:1188,0:-106.675,-9.93399,0,-106.675,-9.93399,-106.675	1/1:43:0,43,0:0:0:43,0:1536,0:-138.352,-12.9443,0,-138.352,-12.9443,-138.352	1/1:31:0,31,0:0:0:31,0:1091,0:-98.3406,-9.33193,0,-98.3406,-9.33193,-98.3406	1/1:34:0,34,0:0:0:34,0:1208,0:-108.834,-10.235,0,-108.834,-10.235,-108.834	1/1:56:0,56,0:0:0:56,0:1992,0:-179.121,-16.8577,0,-179.121,-16.8577,-179.121	1/2:69:0,26,43:0:0:26,43:905,1473:-190.172,-116.727,-108.901,-73.7874,0,-60.8431	1/2:40:0,26,14:0:0:26,14:924,495:-114.102,-38.9852,-31.1584,-75.4618,0,-71.2474	1/2:60:0,17,43:0:0:17,43:612,1510:-169.267,-119.381,-114.263,-50.2406,0,-37.2963	1/1:102:0,102,0:0:0:102,0:3640,0:-327.592,-30.7051,0,-327.592,-30.7051,-327.592	1/1:1:0,1,0:0:0:1,0:36,0:-3.59568,-0.30103,0,-3.59568,-0.30103,-3.59568	1/1:46:0,43,0:0:0:43,0:1540,0:-137.791,-12.9443,0,-137.791,-12.9443,-137.791	1/1:13:0,13,0:0:0:13,0:464,0:-42.0733,-3.91339,0,-42.0733,-3.91339,-42.0733	1/1:10:0,10,0:0:0:10,0:360,0:-32.662,-3.0103,0,-32.662,-3.0103,-32.662	1/1:63:0,63,0:0:0:63,0:2235,0:-200.521,-18.9649,0,-200.521,-18.9649,-200.521	1/1:31:0,31,0:0:0:31,0:1108,0:-99.8619,-9.33193,0,-99.8619,-9.33193,-99.8619	1/1:5:0,5,0:0:0:5,0:180,0:-16.5474,-1.50515,0,-16.5474,-1.50515,-16.5474	1/2:5:0,1,4:0:0:1,4:32,144:-14.4478,-11.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chr01	19506917	.	C	T	68583.8	PASS	AB=0.442259;ABP=60.4355;AC=151;AF=0.811828;AN=186;AO=3248;CIGAR=1X;DP=4355;DPB=4355;DPRA=0;EPP=7055.95;EPPR=2406.83;GTI=4;LEN=1;MEANALT=1;MQM=54.1903;MQMR=41.3975;NS=93;NUMALT=1;ODDS=0.26477;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116346;QR=39623;RO=1107;RPL=0;RPP=7055.95;RPPR=2406.83;RPR=3248;RUN=1;SAF=3248;SAP=7055.95;SAR=0;SRF=1107;SRP=2406.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:864:-77.6984,-7.22472,0	0/1:35:19,16:19:680:16:568:-40.7945,0,-48.4412	1/1:161:0,161:0:0:161:5765:-515.978,-48.4658,0	1/1:97:0,97:0:0:97:3484:-312.901,-29.1999,0	1/1:31:0,31:0:0:31:1092:-98.2019,-9.33193,0	1/1:18:0,18:0:0:18:644:-58.1424,-5.41854,0	0/1:78:33,45:33:1179:45:1616:-122.057,0,-79.9978	1/1:41:0,41:0:0:41:1461:-130.993,-12.3422,0	1/1:55:0,55:0:0:55:1972:-176.337,-16.5567,0	1/1:55:0,55:0:0:55:1968:-176.169,-16.5567,0	1/1:14:0,14:0:0:14:504:-44.4706,-4.21442,0	1/1:56:0,56:0:0:56:1987:-178.423,-16.8577,0	0/1:43:19,24:19:676:24:860:-64.5727,0,-46.3223	1/1:17:0,17:0:0:17:596:-53.4539,-5.11751,0	0/1:38:24,14:24:856:14:504:-34.226,0,-63.3147	1/1:24:0,24:0:0:24:850:-76.6608,-7.22472,0	1/1:13:0,13:0:0:13:468:-41.97,-3.91339,0	0/1:16:10,6:10:356:6:216:-14.9243,0,-25.8781	0/1:15:8,7:8:284:7:252:-18.4556,0,-19.9112	0/1:68:40,28:40:1440:28:1004:-69.969,0,-103.284	0/1:73:39,34:39:1396:34:1220:-87.8489,0,-99.0719	0/1:85:74,11:74:2652:11:396:-10.3837,0,-208.785	1/1:41:1,40:1:36:40:1436:-125.775,-8.83953,0	1/1:37:0,37:0:0:37:1332:-119.758,-11.1381,0	1/1:27:0,27:0:0:27:968:-86.7477,-8.12781,0	0/1:93:63,30:63:2256:30:1080:-69.3725,0,-169.467	0/1:136:59,77:59:2102:77:2762:-207.151,0,-141.2	1/1:28:0,28:0:0:28:995:-89.7326,-8.42884,0	1/1:110:0,110:0:0:110:3926:-352.891,-33.1133,0	1/1:66:0,66:0:0:66:2368:-212.584,-19.868,0	1/1:49:0,49:0:0:49:1751:-157.628,-14.7505,0	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	1/1:7:0,7:0:0:7:252:-22.9963,-2.10721,0	0/1:6:4,2:4:144:2:72:-5.01335,0,-11.0724	1/1:4:0,4:0:0:4:144:-13.2518,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7408,-1.80618,0	0/1:174:96,78:96:3428:78:2783:-198.177,0,-249.975	0/1:33:19,14:19:672:14:500:-35.2144,0,-47.9797	0/1:20:10,10:10:360:10:351:-25.8302,0,-24.6513	.:.:.:.:.:.:.:.	0/1:73:39,34:39:1396:34:1220:-87.9777,0,-97.1745	1/1:10:0,10:0:0:10:360:-32.6979,-3.0103,0	1/1:36:0,36:0:0:36:1288:-115.697,-10.8371,0	1/1:42:0,42:0:0:42:1504:-135.506,-12.6433,0	1/1:31:0,31:0:0:31:1110:-100.094,-9.33193,0	1/1:34:0,34:0:0:34:1216:-109.553,-10.235,0	1/1:58:0,58:0:0:58:2088:-187.402,-17.4597,0	0/1:71:44,27:44:1564:27:964:-65.5409,0,-116.157	0/1:39:14,25:14:504:25:900:-69.3921,0,-32.1999	0/1:60:44,16:44:1584:16:576:-34.0756,0,-120.479	1/1:99:0,99:0:0:99:3555:-319.959,-29.802,0	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:46:0,46:0:0:46:1652:-147.726,-13.8474,0	1/1:14:0,14:0:0:14:504:-45.6724,-4.21442,0	1/1:10:0,10:0:0:10:351:-31.8515,-3.0103,0	1/1:63:0,63:0:0:63:2264:-203.171,-18.9649,0	1/1:31:0,31:0:0:31:1112:-100.236,-9.33193,0	1/1:5:0,5:0:0:5:180:-16.5474,-1.50515,0	0/1:5:4,1:4:144:1:32:-1.69053,0,-11.5785	1/1:15:0,15:0:0:15:540:-48.86,-4.51545,0	1/1:66:0,66:0:0:66:2349:-210.908,-19.868,0	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	1/1:162:0,162:0:0:162:5812:-522.395,-48.7669,0	1/1:69:0,69:0:0:69:2476:-222.717,-20.7711,0	1/1:38:0,38:0:0:38:1345:-120.563,-11.4391,0	1/1:21:0,21:0:0:21:747:-67.3388,-6.32163,0	1/1:64:0,64:0:0:64:2300:-207.112,-19.2659,0	1/1:66:0,66:0:0:66:2372:-213.247,-19.868,0	1/1:8:0,8:0:0:8:288:-26.2302,-2.40824,0	1/1:18:0,18:0:0:18:644:-58.148,-5.41854,0	1/1:39:0,39:0:0:39:1404:-126.557,-11.7402,0	1/1:9:0,9:0:0:9:320:-29.1225,-2.70927,0	0/1:57:28,29:28:1008:29:1040:-76.5124,0,-70.2302	0/1:59:31,28:31:1104:28:1008:-73.03,0,-78.7118	0/1:54:31,23:31:1107:23:828:-58.4824,0,-79.7695	0/1:116:45,71:45:1620:71:2556:-194.867,0,-106.765	0/1:40:21,19:21:752:19:684:-49.0409,0,-53.7915	0/1:62:31,31:31:1112:31:1107:-80.8424,0,-77.8231	1/1:10:0,10:0:0:10:360:-32.662,-3.0103,0	0/1:48:26,22:26:932:22:788:-56.6966,0,-65.4564	0/1:41:26,15:26:936:15:527:-35.0732,0,-68.2588	0/1:86:47,39:47:1680:39:1389:-98.8604,0,-120.029	0/1:40:26,14:26:936:14:500:-33.252,0,-69.3252	0/1:29:11,18:11:396:18:644:-49.4356,0,-26.2533	1/1:21:0,21:0:0:21:756:-68.228,-6.32163,0	0/1:71:36,35:36:1284:35:1260:-92.0802,0,-90.9163	0/1:15:10,5:10:360:5:176:-11.6306,0,-26.633	1/1:32:0,32:0:0:32:1152:-103.729,-9.63296,0	1/1:45:0,45:0:0:45:1616:-145.296,-13.5464,0	1/1:14:0,14:0:0:14:504:-45.5075,-4.21442,0	0/1:54:37,17:37:1323:17:612:-39.0792,0,-97.881	0/1:50:38,12:38:1364:12:426:-23.5097,0,-104.392	1/1:138:0,138:0:0:138:4952:-444.551,-41.5421,0	1/1:68:0,68:0:0:68:2437:-219.301,-20.47,0
chr01	19506956	.	GA	GG	16421.7	PASS	AB=0.539723;ABP=29.7502;AC=35;AF=0.188172;AN=186;AO=1054;CIGAR=1M1X;DP=4370;DPB=4370;DPRA=1.32877;EPP=2291.74;EPPR=7197.1;GTI=3;LEN=1;MEANALT=1.02778;MQM=41.4194;MQMR=54.1222;NS=93;NUMALT=1;ODDS=0.348891;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37231;QR=117059;RO=3313;RPL=1054;RPP=2291.74;RPPR=7197.1;RPR=0;RUN=1;SAF=1054;SAP=2291.74;SAR=0;SRF=3313;SRP=7197.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.4083	0/1:34:16,18:16:561:18:644:-45.6093,0,-40.4655	0/0:168:168,0:168:5921:0:0:0,-50.573,-529.811	0/0:99:99,0:99:3514:0:0:0,-29.802,-315.632	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.1921	0/0:19:19,0:19:667:0:0:0,-5.71957,-60.2099	0/1:79:47,32:47:1673:32:1131:-75.2606,0,-126.882	0/0:41:41,0:41:1444:0:0:0,-12.3422,-129.321	0/0:55:55,0:55:1965:0:0:0,-16.5566,-175.807	0/0:57:57,0:57:1986:0:0:0,-17.1587,-177.778	0/0:14:14,0:14:504:0:0:0,-4.21442,-44.4706	0/0:58:58,0:58:2027:0:0:0,-17.4597,-181.852	0/1:43:25,18:25:882:18:631:-42.4672,0,-66.5196	0/0:17:17,0:17:601:0:0:0,-5.11751,-53.8298	0/1:37:14,23:14:500:23:807:-59.5001,0,-34.167	0/0:24:24,0:24:827:0:0:0,-7.22472,-74.5045	0/0:13:13,0:13:462:0:0:0,-3.91339,-41.4423	0/1:16:6,10:6:216:10:356:-25.8781,0,-14.9243	0/1:14:7,7:7:250:7:248:-17.7583,0,-18.5774	0/1:69:30,39:30:1072:39:1373:-97.2765,0,-75.7827	0/1:71:35,36:35:1209:36:1280:-89.7719,0,-86.2839	0/1:85:11,74:11:396:74:2617:-205.952,0,-10.3837	0/0:43:42,1:42:1485:1:36:0,-9.44159,-130.168	0/0:38:38,0:38:1340:0:0:0,-11.4391,-120.483	0/0:28:28,0:28:980:0:0:0,-8.42884,-87.8023	0/1:90:31,59:31:1112:59:2067:-155.605,0,-73.1731	0/1:134:77,57:77:2735:57:2040:-136.396,0,-205.212	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.6086	0/0:110:110,0:110:3865:0:0:0,-33.1133,-347.468	0/0:68:68,0:68:2395:0:0:0,-20.47,-215.03	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.222	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9963	0/1:6:2,4:2:72:4:144:-11.0724,0,-5.01335	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4448	0/0:6:6,0:6:214:0:0:0,-1.80618,-19.561	0/1:169:81,88:81:2834:88:3069:-220.331,0,-204.215	0/1:33:14,19:14:494:19:668:-47.9184,0,-34.6777	0/1:20:10,10:10:360:10:340:-23.056,0,-26.6358	.:.:.:.:.:.:.:.	0/1:75:35,40:35:1222:40:1436:-99.9689,0,-87.5656	0/0:10:10,0:10:340:0:0:0,-3.0103,-30.8908	0/0:37:37,0:37:1308:0:0:0,-11.1381,-117.126	0/0:43:43,0:43:1531:0:0:0,-12.9443,-137.839	0/0:31:31,0:31:1110:0:0:0,-9.33193,-100.039	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.322	0/0:58:58,0:58:2067:0:0:0,-17.4597,-185.534	0/1:70:27,43:27:944:43:1536:-113.95,0,-64.0353	0/1:40:26,14:26:923:14:492:-31.1703,0,-71.155	0/1:57:17,40:17:608:40:1424:-107.505,0,-37.84	0/0:105:105,0:105:3699:0:0:0,-31.6081,-332.911	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83179	0/0:46:46,0:46:1640:0:0:0,-13.8474,-146.62	0/0:14:14,0:14:502:0:0:0,-4.21442,-45.4919	0/0:10:10,0:10:358:0:0:0,-3.0103,-32.4836	0/0:63:63,0:63:2248:0:0:0,-18.9649,-201.603	0/0:32:32,0:32:1132:0:0:0,-9.63296,-102.019	0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3644	0/1:5:1,4:1:34:4:144:-11.5785,0,-1.88802	0/0:16:16,0:16:551:0:0:0,-4.81648,-49.839	0/0:67:67,0:67:2347:0:0:0,-20.169,-210.729	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.304	0/0:165:165,0:165:5810:0:0:0,-49.6699,-522.23	0/0:71:71,0:71:2511:0:0:0,-21.3731,-225.941	0/0:39:39,0:39:1368:0:0:0,-11.7402,-122.493	0/0:21:21,0:21:743:0:0:0,-6.32163,-66.9785	0/0:64:64,0:64:2287:0:0:0,-19.2659,-205.946	0/0:67:67,0:67:2373:0:0:0,-20.169,-213.403	0/0:8:8,0:8:283:0:0:0,-2.40824,-25.7782	0/0:18:18,0:18:631:0:0:0,-5.41854,-56.9847	0/0:39:39,0:39:1373:0:0:0,-11.7402,-123.769	0/0:9:9,0:9:300:0:0:0,-2.70927,-27.3066	0/1:56:29,27:29:1042:27:964:-66.8073,0,-76.9938	0/1:57:28,29:28:986:29:1025:-72.3609,0,-71.6834	0/1:55:24,31:24:844:31:1095:-78.6059,0,-59.5975	0/1:115:72,43:72:2586:43:1525:-99.3701,0,-197.881	0/1:40:20,20:20:718:20:704:-49.757,0,-52.0644	0/1:60:31,29:31:1096:29:1040:-72.1597,0,-80.4672	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3052	0/1:47:22,22:22:782:22:776:-54.0869,0,-57.0571	0/1:37:15,22:15:538:22:784:-56.3306,0,-37.1229	0/1:82:39,43:39:1328:43:1496:-105.717,0,-94.5334	0/1:39:14,25:14:504:25:887:-65.356,0,-33.9135	0/1:30:19,11:19:678:11:392:-25.6395,0,-52.1918	0/0:21:21,0:21:749:0:0:0,-6.32163,-67.6541	0/1:69:35,34:35:1238:34:1186:-83.3179,0,-90.7047	0/1:15:6,9:6:216:9:324:-23.4997,0,-15.214	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.251	0/0:46:46,0:46:1611:0:0:0,-13.8474,-144.865	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.5075	0/1:53:17,36:17:601:36:1230:-91.3776,0,-38.3895	0/1:49:12,37:12:432:37:1320:-100.919,0,-24.1707	0/0:141:141,0:141:4915:0:0:0,-42.4452,-441.383	0/0:70:70,0:70:2488:0:0:0,-21.0721,-223.754
chr01	19517155	.	T	C	129650	PASS	AB=0.441893;ABP=129.441;AC=152;AF=0.808511;AN=188;AO=5950;CIGAR=1X;DP=8382;DPB=8382;DPRA=45.0538;EPP=10488;EPPR=4460.64;GTI=8;LEN=1;MEANALT=1.03226;MQM=59.9434;MQMR=59.6566;NS=94;NUMALT=1;ODDS=1.85986;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208538;QR=86781;RO=2429;RPL=5655;RPP=10488;RPPR=4460.64;RPR=295;RUN=1;SAF=5950;SAP=12923.3;SAR=0;SRF=2429;SRP=5277.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:516:-46.6936,-4.51545,0	0/1:107:37,70:37:1332:70:2473:-190.609,0,-87.9722	1/1:80:0,80:0:0:80:2771:-249.631,-24.0824,0	1/1:149:1,148:1:36:148:5213:-465.715,-41.2552,0	1/1:129:1,128:1:36:128:4555:-406.503,-35.2397,0	1/1:51:1,50:1:36:50:1754:-154.524,-11.7543,0	0/1:258:150,108:150:5367:108:3814:-265.793,0,-405.496	1/1:149:0,149:0:0:149:5244:-472.083,-44.8535,0	1/1:85:0,85:0:0:85:2951:-265.822,-25.5876,0	1/1:93:0,93:0:0:93:3287:-296.051,-27.9958,0	1/1:55:0,55:0:0:55:1889:-170.282,-16.5567,0	1/1:77:0,77:0:0:77:2624:-236.404,-23.1793,0	0/1:57:26,31:26:932:31:1071:-79.5355,0,-67.0238	1/1:80:0,80:0:0:80:2787:-251.067,-24.0824,0	0/1:60:30,30:30:1080:30:1067:-78.2794,0,-79.4515	1/1:43:1,42:1:36:42:1473:-129.264,-9.34602,0	1/1:56:0,56:0:0:56:1901:-171.357,-16.8577,0	0/1:50:23,27:23:820:27:943:-70.1317,0,-59.071	0/1:51:20,31:20:720:31:1080:-82.1539,0,-49.7762	0/1:266:156,110:156:5582:110:3857:-267.245,0,-422.353	0/1:160:77,83:77:2740:83:2904:-213.425,0,-198.676	0/1:134:107,27:107:3828:27:959:-46.28,0,-304.16	1/1:85:0,85:0:0:85:2998:-270.054,-25.5876,0	1/1:76:6,69:6:216:69:2428:-198.984,-3.14657,0	1/1:64:0,64:0:0:64:2222:-200.243,-19.2659,0	0/1:292:167,125:167:5958:125:4423:-310.343,0,-448.409	0/1:121:65,56:65:2323:56:1980:-142.047,0,-172.9	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:212:0,211:0:0:211:7422:-667.754,-63.5173,0	1/1:133:1,132:1:36:132:4611:-411.56,-36.4387,0	1/1:119:1,118:1:36:118:4174:-372.247,-32.2243,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:19:0,19:0:0:19:658:-59.5413,-5.71957,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:210:111,99:111:3951:99:3399:-242.905,0,-292.564	0/1:215:97,118:97:3470:118:4184:-312.022,0,-247.766	0/1:66:38,28:38:1364:28:941:-65.1264,0,-103.193	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:122:82,40:82:2935:40:1411:-90.5609,0,-227.658	1/1:35:0,35:0:0:35:1230:-111.002,-10.5361,0	1/1:39:0,39:0:0:39:1396:-125.923,-11.7402,0	1/1:75:1,74:1:36:74:2558:-226.869,-18.979,0	1/1:60:0,60:0:0:60:2100:-189.266,-18.0618,0	1/1:81:0,81:0:0:81:2820:-253.969,-24.3834,0	1/1:84:0,84:0:0:84:2986:-268.972,-25.2865,0	0/1:129:71,58:71:2543:58:2023:-143.507,0,-190.275	0/1:136:85,51:85:3044:51:1772:-118.82,0,-232.313	0/1:94:66,28:66:2368:28:988:-60.9371,0,-185.081	1/1:49:0,49:0:0:49:1734:-156.343,-14.7505,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	1/1:119:1,118:1:36:118:4176:-372.409,-32.2243,0	1/1:40:0,40:0:0:40:1418:-127.916,-12.0412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:99:0,99:0:0:99:3519:-316.863,-29.802,0	1/1:66:0,66:0:0:66:2333:-210.228,-19.868,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:23:10,13:10:360:13:460:-34.8117,0,-25.8206	1/1:68:0,68:0:0:68:2428:-218.776,-20.47,0	1/1:140:0,140:0:0:140:4863:-437.827,-42.1442,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:97:0,97:0:0:97:3366:-303.158,-29.1999,0	1/1:164:3,161:3:108:161:5616:-495.498,-39.2938,0	1/1:77:0,77:0:0:77:2723:-245.314,-23.1793,0	1/1:58:0,58:0:0:58:2018:-181.89,-17.4597,0	1/1:157:4,153:4:144:153:5370:-470.124,-33.9481,0	1/1:79:0,79:0:0:79:2772:-249.722,-23.7814,0	1/1:35:0,35:0:0:35:1224:-110.461,-10.5361,0	1/1:52:0,52:0:0:52:1831:-165.07,-15.6536,0	1/1:68:0,68:0:0:68:2371:-213.645,-20.47,0	1/1:33:0,33:0:0:33:1152:-103.985,-9.93399,0	0/1:157:106,51:106:3767:51:1820:-116.82,0,-291.918	0/1:61:49,12:49:1747:12:432:-20.8584,0,-139.151	0/1:197:116,81:116:4147:81:2842:-196.716,0,-314.101	0/1:135:76,59:76:2728:59:2099:-148.54,0,-205.124	0/1:157:81,76:81:2900:76:2697:-195.676,0,-213.24	0/1:69:40,29:40:1424:29:1028:-72.062,0,-107.686	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:68:42,26:42:1512:26:936:-64.0894,0,-115.905	0/1:86:56,30:56:2001:30:1056:-69.4616,0,-154.449	0/1:311:154,157:154:5471:157:5537:-404.841,0,-398.893	0/1:123:69,54:69:2440:54:1915:-135.6,0,-182.827	0/1:43:23,20:23:809:20:711:-51.3714,0,-60.184	1/1:59:0,59:0:0:59:2035:-183.415,-17.7608,0	0/1:136:61,75:61:2187:75:2608:-194.025,0,-156.155	0/1:34:16,18:16:564:18:618:-45.7057,0,-40.8553	1/1:84:0,84:0:0:84:2807:-252.867,-25.2865,0	1/1:62:0,62:0:0:62:2119:-190.97,-18.6639,0	1/1:49:0,49:0:0:49:1716:-154.722,-14.7505,0	0/1:133:66,66:66:2359:66:2235:-161.309,0,-172.472	0/1:50:32,18:32:1144:18:613:-40.4369,0,-88.218	1/1:69:0,69:0:0:69:2416:-217.652,-20.7711,0	1/1:105:1,104:1:36:104:3637:-323.937,-28.0099,0
chr01	19517160	.	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chr01	19720020	.	G	A	22010.2	PASS	AB=0.447006;ABP=79.1898;AC=34;AF=0.180851;AN=188;AO=1406;CIGAR=1X;DP=8172;DPB=8172;DPRA=1.27734;EPP=3056.1;EPPR=14680;GTI=1;LEN=1;MEANALT=1.025;MQM=59.9986;MQMR=59.999;NS=94;NUMALT=1;ODDS=2.04555;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49763;QR=240415;RO=6763;RPL=0;RPP=3056.1;RPPR=14688.7;RPR=1406;RUN=1;SAF=1406;SAP=3056.1;SAR=0;SRF=6762;SRP=14680;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:99:65,34:65:2302:34:1175:-76.2461,0,-177.636	0/0:172:172,0:172:6164:0:0:0,-51.7772,-554.858	0/0:134:133,1:133:4662:1:36:0,-36.7397,-416.143	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:97:70,27:70:2482:27:964:-57.8769,0,-194.431	0/0:148:145,3:145:5159:3:108:0,-34.4773,-454.374	0/0:76:76,0:76:2664:0:0:0,-22.8783,-240.001	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/0:69:69,0:69:2454:0:0:0,-20.7711,-221.111	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.191	0/1:72:34,38:34:1224:38:1345:-99.674,0,-88.7929	0/0:100:100,0:100:3569:0:0:0,-30.103,-321.417	0/1:65:31,34:31:1112:34:1220:-90.5399,0,-80.8244	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.605	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:60:27,33:27:972:33:1188:-89.1668,0,-69.7361	0/1:56:31,25:31:1116:25:896:-64.1027,0,-83.894	0/1:131:69,62:69:2453:62:2220:-160.63,0,-181.589	0/1:125:72,53:72:2558:53:1879:-131.758,0,-192.839	0/1:92:37,55:37:1332:55:1957:-148.709,0,-92.4876	0/0:87:87,0:87:3094:0:0:0,-26.1896,-278.685	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.983	0/0:58:58,0:58:2058:0:0:0,-17.4597,-185.488	0/1:174:82,92:82:2921:92:3250:-240.34,0,-210.745	0/1:73:41,32:41:1431:32:1091:-76.5142,0,-107.105	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:154:154,0:154:5502:0:0:0,-46.3586,-495.304	0/0:149:148,1:148:5240:1:36:0,-41.2552,-468.138	0/0:117:117,0:117:4132:0:0:0,-35.2205,-372.062	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/1:211:99,112:99:3556:112:3989:-295.683,0,-256.73	0/0:323:323,0:323:11524:0:0:0,-97.2327,-1037.03	0/1:67:44,23:44:1568:23:824:-54.3143,0,-121.243	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:94:53,41:53:1900:41:1438:-101.415,0,-142.981	0/0:50:50,0:50:1762:0:0:0,-15.0515,-158.859	0/0:142:142,0:142:5066:0:0:0,-42.7463,-456.083	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.554	0/0:118:118,0:118:4179:0:0:0,-35.5215,-376.291	0/0:133:133,0:133:4735:0:0:0,-40.037,-426.306	0/1:191:123,68:123:4344:68:2338:-153.174,0,-333.637	0/1:84:58,26:58:2076:26:928:-58.5517,0,-161.824	0/1:92:51,41:51:1813:41:1472:-105.081,0,-135.755	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:135:135,0:135:4697:0:0:0,-40.639,-422.888	0/0:81:81,0:81:2844:0:0:0,-24.3834,-256.194	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:120:119,1:119:4249:1:21:0,-34.0237,-380.488	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:120:119,0:119:4211:0:0:0,-35.8226,-378.959	0/0:149:147,2:147:5250:2:72:0,-38.0167,-465.798	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:158:158,0:158:5597:0:0:0,-47.5627,-503.85	0/0:182:182,0:182:6420:0:0:0,-54.7875,-577.885	0/0:73:73,0:73:2571:0:0:0,-21.9752,-231.636	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/0:137:137,0:137:4883:0:0:0,-41.2411,-439.619	0/0:150:147,2:147:5250:2:68:0,-38.649,-466.219	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:82:82,0:82:2909:0:0:0,-24.6845,-262.043	0/0:85:85,0:85:2988:0:0:0,-25.5875,-269.148	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:106:62,44:62:2205:44:1546:-107.519,0,-166.804	0/1:66:38,28:38:1368:28:989:-69.454,0,-103.553	0/1:123:77,46:77:2752:46:1603:-107.527,0,-210.896	0/1:103:64,39:64:2300:39:1385:-93.9408,0,-176.255	0/1:78:50,28:50:1792:28:983:-65.3007,0,-138.082	0/1:78:47,31:47:1680:31:1099:-75.7391,0,-128.007	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:45:35,10:35:1241:10:360:-19.198,0,-98.4462	0/1:61:44,17:44:1546:17:608:-36.6892,0,-121.065	0/1:139:70,69:70:2452:69:2412:-175.488,0,-179.086	0/1:89:53,36:53:1878:36:1280:-88.7116,0,-142.503	0/1:72:34,38:34:1175:38:1352:-100.306,0,-84.3739	0/0:82:82,0:82:2906:0:0:0,-24.6845,-261.774	0/1:131:55,76:55:1957:76:2697:-203.538,0,-136.969	0/1:36:16,20:16:576:20:716:-53.9306,0,-41.3379	0/0:111:110,0:110:3918:0:0:0,-33.1133,-352.451	0/0:99:99,0:99:3518:0:0:0,-29.802,-316.828	0/0:77:77,0:77:2722:0:0:0,-23.1793,-245.221	0/1:123:61,62:61:2192:62:2214:-162.498,0,-160.519	0/1:77:24,53:24:830:53:1896:-147.739,0,-51.833	0/0:73:73,0:73:2605:0:0:0,-21.9752,-234.697	0/0:104:104,0:104:3688:0:0:0,-31.3071,-332.123
chr01	19921544	.	ACTCA	CCTCG,CCTCA	243242	PASS	AB=0.46168,0.53557;ABP=72.5755,62.9484;AC=151,37;AF=0.803191,0.196809;AN=188;AO=8478,2940;CIGAR=1X3M1X,1X4M;DP=11465;DPB=11466.6;DPRA=62.288,1.74456;EPP=18412.8,6387.14;EPPR=7.35324;GTI=7;LEN=5,1;MEANALT=1.8913,2.4186;MQM=59.9711,59.9929;MQMR=60;NS=94;NUMALT=2;ODDS=1.24711;PAIRED=0,0;PAIREDR=0;PAO=4,4;PQA=118,118;PQR=0;PRO=0;QA=299652,104760;QR=72;RO=2;RPL=8478,2940;RPP=18412.8,6387.14;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=18412.8,6387.14;SAR=8478,2940;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32,0:0:0:32,0:1117,0:-100.836,-9.63296,0,-100.836,-9.63296,-100.836	1/2:157:0,64,93:0:0:64,93:2281,3283:-453.623,-267.692,-248.426,-186.286,0,-158.29	1/1:183:0,183,0:0:0:183,0:6450,0:-580.596,-55.0885,0,-580.596,-55.0885,-580.596	1/1:288:0,287,0:0:0:287,0:10143,0:-912.418,-86.3956,0,-912.418,-86.3956,-912.418	1/1:136:0,132,0:0:0:132,0:4707,0:-423.42,-39.736,0,-423.42,-39.736,-423.42	1/1:82:0,81,1:0:0:81,1:2862,36:-257.446,-24.3834,0,-254.509,-21.0862,-254.208	1/2:129:0,63,66:0:0:63,66:2197,2364:-371.826,-193.15,-174.185,-179.029,0,-159.161	1/1:200:0,197,2:0:0:197,2:6935,72:-623.872,-59.3029,0,-617.997,-53.4214,-617.395	1/1:130:0,130,0:0:0:130,0:4598,0:-413.99,-39.1339,0,-413.99,-39.1339,-413.99	1/1:113:0,113,0:0:0:113,0:3959,0:-356.504,-34.0164,0,-356.504,-34.0164,-356.504	1/1:61:0,59,0:0:0:59,0:2101,0:-189.061,-17.7608,0,-189.061,-17.7608,-189.061	1/1:84:0,84,0:0:0:84,0:2956,0:-266.156,-25.2865,0,-266.156,-25.2865,-266.156	1/2:80:0,38,41:0:0:38,41:1349,1468:-229.628,-119.714,-108.275,-109.911,0,-97.5686	1/1:55:0,54,0:0:0:54,0:1908,0:-171.637,-16.2556,0,-171.637,-16.2556,-171.637	1/2:80:0,43,37:0:0:43,37:1544,1332:-234.994,-109.044,-96.1,-126.309,0,-115.171	1/1:78:0,78,0:0:0:78,0:2746,0:-247.383,-23.4803,0,-247.383,-23.4803,-247.383	1/1:74:0,73,0:0:0:73,0:2592,0:-233.169,-21.9752,0,-233.169,-21.9752,-233.169	1/2:67:0,37,30:0:0:37,30:1311,1068:-194.199,-87.4012,-76.2631,-107.153,0,-98.1219	1/2:34:0,17,17:0:0:17,17:609,612:-99.962,-50.2959,-45.1784,-50.0251,0,-44.9075	1/2:438:1,220,216:1:36:220,216:7802,7704:-1260.47,-625.14,-561.85,-632.763,0,-570.678	1/2:196:0,97,99:0:0:97,99:3440,3556:-570.703,-290.445,-261.245,-280.615,0,-250.813	1/2:155:0,54,101:0:0:54,101:1916,3537:-444.241,-288.132,-271.877,-156.462,0,-126.058	1/1:88:0,87,0:0:0:87,0:3028,0:-272.421,-26.1896,0,-272.421,-26.1896,-272.421	1/1:73:0,70,3:0:0:70,3:2475,108:-222.644,-21.0721,0,-213.832,-11.9,-212.928	1/1:137:0,137,0:0:0:137,0:4854,0:-437.019,-41.2411,0,-437.019,-41.2411,-437.019	1/2:427:0,182,244:0:0:182,244:6448,8665:-1231.41,-706.142,-651.355,-525.375,0,-451.924	1/2:247:0,118,129:0:0:118,129:4181,4579:-714.039,-373.441,-337.919,-340.953,0,-302.12	1/1:56:1,55,0:1:36:55,0:1952,0:-172.356,-13.2594,0,-172.657,-16.5567,-175.595	1/1:326:0,326,0:0:0:326,0:11536,0:-1038.13,-98.1358,0,-1038.13,-98.1358,-1038.13	1/1:57:0,57,0:0:0:57,0:2007,0:-180.903,-17.1587,0,-180.903,-17.1587,-180.903	1/1:113:0,110,1:0:0:110,1:3897,36:-350.438,-33.1133,0,-347.501,-30.1609,-347.2	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:7:0,7,0:0:0:7,0:250,0:-22.8468,-2.10721,0,-22.8468,-2.10721,-22.8468	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:268:0,122,145:0:0:122,145:4305,5212:-775.885,-425.339,-388.613,-350.674,0,-307.024	1/1:198:0,196,0:0:0:196,0:6919,0:-622.425,-59.0019,0,-622.425,-59.0019,-622.425	1/2:51:0,22,29:0:0:22,29:785,1036:-148.819,-84.824,-78.2014,-64.3513,0,-55.6214	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:206:0,101,105:0:0:101,105:3601,3764:-600.887,-307.351,-276.947,-293.894,0,-262.286	1/1:37:0,37,0:0:0:37,0:1281,0:-115.588,-11.1381,0,-115.588,-11.1381,-115.588	1/1:249:0,248,0:0:0:248,0:8694,0:-782.188,-74.6554,0,-782.188,-74.6554,-782.188	1/1:105:0,104,0:0:0:104,0:3658,0:-329.057,-31.3071,0,-329.057,-31.3071,-329.057	1/1:113:0,112,0:0:0:112,0:3972,0:-357.314,-33.7154,0,-357.314,-33.7154,-357.314	1/1:45:0,45,0:0:0:45,0:1583,0:-142.757,-13.5464,0,-142.757,-13.5464,-142.757	1/1:190:0,190,0:0:0:190,0:6688,0:-602.006,-57.1957,0,-602.006,-57.1957,-602.006	1/2:293:0,119,173:0:0:119,173:4202,6171:-845.234,-503.047,-467.225,-342.182,0,-290.104	1/2:196:0,89,105:0:0:89,105:3116,3765:-560.628,-307.108,-280.317,-253.543,0,-221.935	1/2:155:0,63,91:0:0:63,91:2246,3253:-448.309,-265.226,-246.261,-183.07,0,-155.676	1/1:253:0,251,0:0:0:251,0:8865,0:-797.509,-75.5585,0,-797.509,-75.5585,-797.509	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:164:0,163,0:0:0:163,0:5758,0:-518.03,-49.0679,0,-518.03,-49.0679,-518.03	1/1:60:0,60,0:0:0:60,0:2099,0:-189.178,-18.0618,0,-189.178,-18.0618,-189.178	1/1:5:0,5,0:0:0:5,0:178,0:-16.3686,-1.50515,0,-16.3686,-1.50515,-16.3686	1/1:130:0,130,0:0:0:130,0:4555,0:-410.063,-39.1339,0,-410.063,-39.1339,-410.063	1/1:90:0,90,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chr01	19940884	.	T	A	27101.2	PASS	AB=0.473413;ABP=24.4866;AC=36;AF=0.191489;AN=188;AO=1667;CIGAR=1X;DP=8028;DPB=8028;DPRA=1.45409;EPP=3605.5;EPPR=13744.2;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9978;NS=94;NUMALT=1;ODDS=0.40459;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59229;QR=226996;RO=6360;RPL=2;RPP=3605.5;RPPR=13752.8;RPR=1665;RUN=1;SAF=1667;SAP=3622.85;SAR=0;SRF=6359;SRP=13804.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:79:48,31:48:1705:31:1094:-74.9865,0,-129.953	0/0:362:362,0:362:12813:0:0:0,-108.973,-1152.99	0/0:166:165,1:165:5831:1:36:0,-46.3727,-521.305	0/0:92:92,0:92:3270:0:0:0,-27.6948,-294.518	0/0:35:35,0:35:1230:0:0:0,-10.536,-111	0/1:59:33,26:33:1169:26:920:-65.3563,0,-87.7545	0/0:81:81,0:81:2885:0:0:0,-24.3834,-259.885	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.203	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/1:58:38,20:38:1364:20:720:-47.669,0,-105.601	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:60:40,20:40:1432:20:716:-46.7059,0,-111.116	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:80:80,0:80:2841:0:0:0,-24.0824,-255.928	0/1:38:29,9:29:1040:9:324:-18.0667,0,-82.4752	0/1:34:19,15:19:646:15:536:-38.3398,0,-48.2202	0/1:169:90,79:90:3217:79:2770:-198.667,0,-238.877	0/1:47:23,24:23:828:24:856:-63.2127,0,-60.6957	0/1:129:43,86:43:1540:86:3076:-238.236,0,-100.06	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/0:97:94,3:94:3376:3:108:0,-19.1247,-293.98	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:215:111,104:111:3957:104:3699:-268.391,0,-291.6	0/1:213:105,108:105:3768:108:3815:-279.427,0,-275.199	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:261:261,0:261:9334:0:0:0,-78.5688,-840.022	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.831	0/0:193:192,1:192:6873:1:36:0,-54.5005,-615.039	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:219:138,81:138:4960:81:2904:-195.67,0,-380.621	0/0:75:74,1:74:2656:1:32:0,-19.3779,-236.086	0/1:48:30,18:30:1080:18:644:-43.8412,0,-83.0638	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:138:60,78:60:2148:78:2769:-207.909,0,-152.045	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:155:154,0:154:5494:0:0:0,-46.3586,-494.225	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.035	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:107:107,0:107:3825:0:0:0,-32.2102,-344.445	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/1:211:95,116:95:3355:116:4137:-308.996,0,-238.647	0/1:72:27,45:27:968:45:1608:-123.336,0,-65.7632	0/1:97:45,52:45:1620:52:1852:-137.76,0,-116.89	0/0:162:162,0:162:5785:0:0:0,-48.7669,-520.764	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:134:134,0:134:4789:0:0:0,-40.338,-431.165	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:120:120,0:120:4206:0:0:0,-36.1236,-378.719	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:45:44,1:44:1584:1:21:0,-11.4464,-140.752	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.895	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:224:224,0:224:8017:0:0:0,-67.4307,-721.549	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.668	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:80:80,0:80:2823:0:0:0,-24.0824,-254.306	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:90:90,0:90:3198:0:0:0,-27.0927,-288.041	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:116:74,42:74:2622:42:1500:-100.375,0,-201.306	0/1:39:32,7:32:1152:7:248:-10.924,0,-92.25	0/1:143:84,59:84:3001:59:2091:-145.412,0,-227.273	0/1:239:102,137:102:3648:137:4844:-364.167,0,-256.579	0/1:109:56,53:56:1989:53:1904:-138.825,0,-146.47	0/1:72:33,39:33:1184:39:1374:-102.28,0,-85.1942	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:146:82,64:82:2932:64:2281:-161.6,0,-220.164	0/1:100:40,60:40:1412:60:2148:-163.484,0,-97.2743	0/1:228:118,110:118:4232:110:3850:-278.058,0,-312.424	0/1:89:48,41:48:1720:41:1476:-106.345,0,-128.294	0/1:46:31,15:31:1116:15:525:-33.7307,0,-86.9043	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:135:83,52:83:2976:52:1854:-126.501,0,-227.433	0/1:44:25,19:25:900:19:684:-48.645,0,-68.0723	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:77:77,0:77:2757:0:0:0,-23.1793,-248.37	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/1:62:45,17:45:1616:17:612:-36.7496,0,-127.066	0/1:44:15,29:15:540:29:1021:-78.9549,0,-35.6912	0/0:86:85,1:85:3048:1:36:0,-22.2903,-270.951	0/0:133:133,0:133:4742:0:0:0,-40.037,-426.937
chr01	19942476	.	G	A	26117.4	PASS	AB=0.506872;ABP=4.26373;AC=36;AF=0.191489;AN=188;AO=1578;CIGAR=1X;DP=6978;DPB=6978;DPRA=1.56229;EPP=3394.94;EPPR=11635.7;GTI=1;LEN=1;MEANALT=1.02222;MQM=59.9689;MQMR=59.9993;NS=94;NUMALT=1;ODDS=0.263062;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56196;QR=190261;RO=5397;RPL=4;RPP=3394.94;RPPR=11635.7;RPR=1574;RUN=1;SAF=0;SAP=3429.59;SAR=1578;SRF=0;SRP=11722.4;SRR=5397;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1238:0:0:0,-10.8371,-111.717	0/1:46:18,28:18:629:28:992:-75.747,0,-43.0864	0/0:97:96,0:96:3410:0:0:0,-28.8989,-306.904	0/0:167:167,0:167:5867:0:0:0,-50.272,-528.147	0/0:53:53,0:53:1849:0:0:0,-15.9546,-166.685	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:57:31,26:31:1112:26:936:-67.4008,0,-83.2326	0/0:75:75,0:75:2632:0:0:0,-22.5772,-237.125	0/0:78:77,1:77:2726:1:36:0,-19.8821,-241.985	0/0:101:100,0:100:3515:0:0:0,-30.103,-316.202	0/0:48:48,0:48:1680:0:0:0,-14.4494,-151.484	0/0:104:104,0:104:3622:0:0:0,-31.3071,-326.191	0/1:71:33,38:33:1164:38:1346:-100.066,0,-83.6911	0/0:80:80,0:80:2798:0:0:0,-24.0824,-252.06	0/1:65:28,37:28:981:37:1315:-99.0841,0,-69.0341	0/0:53:53,0:53:1853:0:0:0,-15.9546,-167.048	0/0:41:41,0:41:1419:0:0:0,-12.3422,-128.002	0/1:40:17,23:17:580:23:807:-60.908,0,-40.4782	0/1:32:18,14:18:633:14:500:-35.7032,0,-47.6621	0/1:187:85,102:85:2971:102:3664:-273.67,0,-211.329	0/1:142:78,64:78:2733:64:2276:-162.354,0,-203.465	0/1:106:37,69:37:1307:69:2463:-190.015,0,-86.0216	0/0:90:85,5:85:3020:5:180:0,-10.5406,-255.478	0/0:62:59,3:59:2084:3:108:0,-8.58869,-177.753	0/0:82:79,3:79:2779:3:104:0,-14.9817,-240.648	0/1:174:102,72:102:3617:72:2551:-177.461,0,-273.357	0/1:134:61,73:61:2153:73:2607:-194.54,0,-153.698	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/0:213:213,0:213:7566:0:0:0,-64.1194,-680.981	0/0:91:89,2:89:3149:2:72:0,-20.557,-276.797	0/0:83:82,1:82:2939:1:36:0,-21.3872,-261.145	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8767	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:191:106,85:106:3716:85:3021:-214.623,0,-277.147	0/0:96:96,0:96:3409:0:0:0,-28.8989,-307.025	0/1:41:15,26:15:527:26:930:-71.6761,0,-35.418	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:65:27,38:27:968:38:1360:-103.134,0,-67.8704	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/0:95:95,0:95:3310:0:0:0,-28.5978,-298.119	0/0:72:72,0:72:2540:0:0:0,-21.6742,-228.85	0/0:68:68,0:68:2372:0:0:0,-20.47,-213.735	0/0:67:67,0:67:2338:0:0:0,-20.169,-210.675	0/0:88:88,0:88:3114:0:0:0,-26.4906,-280.488	0/1:150:89,61:89:3129:61:2180:-151.31,0,-236.681	0/1:66:36,30:36:1264:30:1080:-77.6453,0,-94.1918	0/1:88:60,28:60:2089:28:990:-62.9217,0,-161.786	0/0:98:98,0:98:3460:0:0:0,-29.5009,-311.614	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:80:80,0:80:2821:0:0:0,-24.0824,-254.13	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:130:130,0:130:4589:0:0:0,-39.1339,-413.175	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:103:103,0:103:3619:0:0:0,-31.0061,-325.919	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:138:136,1:136:4817:1:36:0,-38.0027,-430.088	0/0:150:147,3:147:5205:3:108:0,-35.0793,-458.513	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/0:67:67,0:67:2371:0:0:0,-20.169,-213.646	0/0:153:148,5:148:5189:5:180:0,-29.5055,-450.601	0/0:55:55,0:55:1914:0:0:0,-16.5566,-172.531	0/0:45:45,0:45:1598:0:0:0,-13.5463,-144.109	0/0:41:41,0:41:1436:0:0:0,-12.3422,-129.533	0/0:53:52,1:52:1828:1:36:0,-12.3563,-161.2	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:100:39,61:39:1400:61:2145:-163.211,0,-96.1962	0/1:78:33,45:33:1139:45:1598:-120.498,0,-79.3314	0/1:157:90,67:90:3205:67:2358:-165.214,0,-241.41	0/1:116:57,59:57:2031:59:2120:-156.149,0,-148.142	0/1:62:27,35:27:939:35:1244:-93.5974,0,-66.1561	0/1:82:43,39:43:1512:39:1389:-100.622,0,-111.689	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:74:35,39:35:1223:39:1391:-103.212,0,-88.0939	0/1:117:53,64:53:1882:64:2287:-170.871,0,-134.436	0/1:134:72,62:72:2547:62:2201:-158.016,0,-189.141	0/1:55:21,34:21:725:34:1216:-93.1899,0,-49.0111	0/1:57:24,33:24:821:33:1184:-89.7096,0,-57.0413	0/0:47:47,0:47:1655:0:0:0,-14.1484,-149.237	0/1:138:71,67:71:2482:67:2365:-171.561,0,-182.087	0/1:28:13,15:13:456:15:540:-40.5077,0,-32.9444	0/0:79:79,0:79:2790:0:0:0,-23.7814,-251.341	0/0:73:72,1:72:2559:1:36:0,-18.3769,-226.962	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:88:45,43:45:1588:43:1541:-112.493,0,-116.717	0/1:115:43,72:43:1503:72:2559:-195.942,0,-100.941	0/0:82:82,0:82:2916:0:0:0,-24.6845,-262.674	0/0:113:113,0:113:3978:0:0:0,-34.0164,-358.216
chr01	19945342	.	CATA	CATG,GATG	164397	PASS	AB=0.493786,0.500455;ABP=4.11677,3.01622;AC=152,36;AF=0.808511,0.191489;AN=188;AO=5968,1665;CIGAR=3M1X,1X2M1X;DP=7673;DPB=7673.5;DPRA=27.491,1.42627;EPP=12962.4,3618.51;EPPR=9.52472;GTI=3;LEN=1,4;MEANALT=1.82796,2.53659;MQM=59.97,59.5724;MQMR=60;NS=94;NUMALT=2;ODDS=1.49299;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,68;PQR=0;PRO=0;QA=212737,58436;QR=108;RO=3;RPL=5968,1665;RPP=12962.4,3618.51;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=5968,1665;SAP=12962.4,3618.51;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26,0:0:0:26,0:917,0:-82.8446,-7.82678,0,-82.8446,-7.82678,-82.8446	1/2:94:0,38,56:0:0:38,56:1360,1961:-270.443,-159.536,-148.097,-110.902,0,-94.044	1/1:157:0,154,1:0:0:154,1:5497,36:-494.53,-46.3586,0,-491.592,-43.4046,-491.291	1/1:194:0,194,0:0:0:194,0:6869,0:-618.282,-58.3998,0,-618.282,-58.3998,-618.282	1/1:64:0,63,0:0:0:63,0:2252,0:-202.692,-18.9649,0,-202.692,-18.9649,-202.692	1/1:89:0,89,0:0:0:89,0:3156,0:-284.265,-26.7917,0,-284.265,-26.7917,-284.265	1/2:118:0,59,59:0:0:59,59:2095,2080:-340.407,-169.702,-151.942,-171.058,0,-153.297	1/1:101:0,101,0:0:0:101,0:3590,0:-323.115,-30.404,0,-323.115,-30.404,-323.115	1/1:69:0,69,0:0:0:69,0:2461,0:-221.743,-20.7711,0,-221.743,-20.7711,-221.743	1/1:82:0,82,0:0:0:82,0:2939,0:-264.744,-24.6845,0,-264.744,-24.6845,-264.744	1/1:36:0,36,0:0:0:36,0:1280,0:-115.503,-10.8371,0,-115.503,-10.8371,-115.503	1/1:72:0,72,0:0:0:72,0:2580,0:-232.449,-21.6742,0,-232.449,-21.6742,-232.449	1/2:46:0,24,22:0:0:24,22:860,759:-132.057,-61.9107,-54.686,-70.4971,0,-63.8745	1/1:46:0,46,0:0:0:46,0:1638,0:-147.707,-13.8474,0,-147.707,-13.8474,-147.707	1/2:52:0,21,31:0:0:21,31:756,1091:-150.784,-89.0947,-82.7731,-62.0456,0,-52.7137	1/1:42:0,41,0:0:0:41,0:1436,0:-129.281,-12.3422,0,-129.281,-12.3422,-129.281	1/1:58:0,58,0:0:0:58,0:2080,0:-187.47,-17.4597,0,-187.47,-17.4597,-187.47	1/2:28:0,14,14:0:0:14,14:504,490:-81.3452,-40.2164,-36.002,-41.4837,0,-37.2693	1/2:30:0,14,16:0:0:14,16:485,538:-83.2994,-43.8783,-39.6638,-39.7626,0,-34.9461	1/2:146:0,65,80:0:0:65,80:2319,2775:-414.644,-225.592,-206.026,-189.122,0,-165.039	1/2:115:0,63,52:0:0:63,52:2252,1841:-333.316,-149.692,-130.727,-183.978,0,-168.325	1/2:120:0,31,89:0:0:31,89:1099,3111:-342.961,-253.427,-244.095,-89.8875,0,-63.0959	1/1:44:0,44,0:0:0:44,0:1569,0:-141.5,-13.2453,0,-141.5,-13.2453,-141.5	1/1:93:0,91,1:0:0:91,1:3247,35:-292.096,-27.3937,0,-289.248,-24.551,-288.947	1/1:57:0,57,0:0:0:57,0:2029,0:-182.881,-17.1587,0,-182.881,-17.1587,-182.881	1/2:329:0,173,153:0:0:173,153:6187,5354:-940.081,-435.586,-383.508,-504.538,0,-458.481	1/2:187:0,98,87:0:0:98,87:3512,3046:-534.268,-247.833,-218.332,-286.468,0,-260.279	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/1:289:0,286,0:0:0:286,0:10189,0:-916.636,-86.0946,0,-916.636,-86.0946,-916.636	1/1:143:0,143,0:0:0:143,0:5077,0:-457.075,-43.0473,0,-457.075,-43.0473,-457.075	1/1:112:0,110,0:0:0:110,0:3907,0:-351.536,-33.1133,0,-351.536,-33.1133,-351.536	1/1:11:0,11,0:0:0:11,0:390,0:-35.4385,-3.31133,0,-35.4385,-3.31133,-35.4385	1/1:18:0,18,0:0:0:18,0:629,0:-56.9338,-5.41854,0,-56.9338,-5.41854,-56.9338	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:179:0,100,79:0:0:100,79:3536,2768:-513.075,-225.569,-195.466,-287.857,0,-264.076	1/1:179:0,179,0:0:0:179,0:6390,0:-574.816,-53.8844,0,-574.816,-53.8844,-574.816	1/2:49:0,24,25:0:0:24,25:864,869:-141.439,-70.9352,-63.7105,-70.8578,0,-63.3321	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/2:131:0,78,52:0:0:78,52:2787,1828:-376.004,-148.768,-125.288,-227.23,0,-211.577	1/1:29:0,29,0:0:0:29,0:1017,0:-91.8398,-8.72987,0,-91.8398,-8.72987,-91.8398	1/1:147:0,147,0:0:0:147,0:5238,0:-471.557,-44.2514,0,-471.557,-44.2514,-471.557	1/1:49:0,49,0:0:0:49,0:1752,0:-157.964,-14.7505,0,-157.964,-14.7505,-157.964	1/1:43:0,43,0:0:0:43,0:1528,0:-137.813,-12.9443,0,-137.813,-12.9443,-137.813	1/1:131:0,130,0:0:0:130,0:4640,0:-417.507,-39.1339,0,-417.507,-39.1339,-417.507	1/1:88:0,88,0:0:0:88,0:3160,0:-284.624,-26.4906,0,-284.624,-26.4906,-284.624	1/2:123:0,75,48:0:0:75,48:2684,1710:-358.533,-139.662,-117.085,-219.228,0,-204.778	1/2:91:0,48,42:0:0:48,42:1711,1492:-261.039,-121.569,-107.119,-139.534,0,-126.891	1/2:116:0,76,40:0:0:76,40:2701,1408:-335.061,-114.974,-92.0956,-220.44,0,-208.399	1/1:117:0,117,0:0:0:117,0:4174,0:-375.842,-35.2205,0,-375.842,-35.2205,-375.842	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:99:0,99,0:0:0:99,0:3539,0:-318.719,-29.802,0,-318.719,-29.802,-318.719	1/1:34:0,33,1:0:0:33,1:1184,36:-106.509,-9.93399,0,-103.571,-6.63675,-103.27	1/1:20:1,19,0:1:36:19,0:684,0:-58.2921,-2.42233,0,-58.5931,-5.71957,-61.5305	1/1:103:0,102,0:0:0:102,0:3652,0:-328.524,-30.7051,0,-328.524,-30.7051,-328.524	1/1:55:0,55,0:0:0:55,0:1959,0:-176.585,-16.5567,0,-17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chr01	19945357	.	T	C	25813.4	PASS	AB=0.492927;ABP=4.42323;AC=36;AF=0.191489;AN=188;AO=1617;CIGAR=1X;DP=7623;DPB=7623;DPRA=1.36477;EPP=3514.28;EPPR=13038.4;GTI=3;LEN=1;MEANALT=1.07143;MQM=59.5937;MQMR=59.9597;NS=94;NUMALT=1;ODDS=0.325063;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56658;QR=213450;RO=6003;RPL=1617;RPP=3514.28;RPPR=13038.4;RPR=0;RUN=1;SAF=1617;SAP=3514.28;SAR=0;SRF=6003;SRP=13038.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1039:0:0:0,-9.0309,-93.8144	0/1:92:38,54:38:1344:54:1902:-143.754,0,-93.5654	0/0:154:152,1:152:5427:1:36:0,-42.7442,-485.034	0/0:191:191,0:191:6762:0:0:0,-57.4967,-608.657	0/0:61:61,0:61:2149:0:0:0,-18.3628,-193.676	0/0:87:87,0:87:3107:0:0:0,-26.1896,-279.857	0/1:117:59,58:59:2124:58:2049:-149.455,0,-156.208	0/0:101:101,0:101:3590:0:0:0,-30.404,-322.751	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:38:38,0:38:1339:0:0:0,-11.4391,-120.809	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/1:47:24,23:24:856:23:794:-57.5225,0,-63.2127	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:50:20,30:20:712:30:1046:-79.3106,0,-49.3552	0/0:41:41,0:41:1451:0:0:0,-12.3422,-130.885	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	0/1:26:13,13:13:468:13:456:-33.5235,0,-34.6329	0/1:143:65,78:65:2327:78:2681:-198.443,0,-166.642	0/1:115:65,50:65:2324:50:1769:-124.445,0,-174.802	0/1:120:33,87:33:1180:87:3036:-237.346,0,-70.3844	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:93:92,1:92:3242:1:36:0,-24.3975,-288.401	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/1:326:177,147:177:6312:147:5110:-362.115,0,-470.279	0/1:182:99,83:99:3530:83:2860:-202.823,0,-263.122	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:287:287,0:287:10283:0:0:0,-86.3956,-925.393	0/0:141:140,1:140:4987:1:36:0,-38.847,-445.382	0/0:113:113,0:113:4020:0:0:0,-34.0164,-361.986	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:177:101,76:101:3529:76:2639:-184.46,0,-264.508	0/0:178:178,0:178:6340:0:0:0,-53.5833,-569.331	0/1:47:24,23:24:860:23:801:-58.0596,0,-63.5734	0/1:6:5,1:5:171:1:36:-1.79209,0,-13.9193	0/1:127:78,49:78:2795:49:1695:-114.589,0,-213.559	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/0:145:145,0:145:5179:0:0:0,-43.6493,-466.251	0/0:49:49,0:49:1701:0:0:0,-14.7505,-153.371	0/0:42:42,0:42:1494:0:0:0,-12.6433,-134.753	0/0:133:133,0:133:4728:0:0:0,-40.037,-425.672	0/0:89:89,0:89:3161:0:0:0,-26.7917,-284.715	0/1:124:76,48:76:2719:48:1707:-116.456,0,-207.625	0/1:90:48,42:48:1697:42:1483:-106.582,0,-125.921	0/1:114:75,39:75:2664:39:1342:-86.7559,0,-205.684	0/0:120:120,0:120:4258:0:0:0,-36.1236,-383.343	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:100:100,0:100:3542:0:0:0,-30.103,-318.991	0/0:36:35,1:35:1239:1:36:0,-7.2388,-108.215	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:105:105,0:105:3737:0:0:0,-31.6081,-336.531	0/0:54:54,0:54:1904:0:0:0,-16.2556,-171.635	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:127:122,5:122:4349:5:171:0,-22.5054,-375.859	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:195:195,0:195:6890:0:0:0,-58.7008,-620.066	0/0:145:145,0:145:5154:0:0:0,-43.6493,-463.712	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:115:114,1:114:4016:1:36:0,-31.0219,-358.005	0/0:77:77,0:77:2748:0:0:0,-23.1793,-247.563	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:91:91,0:91:3199:0:0:0,-27.3937,-288.132	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:126:53,73:53:1884:73:2575:-194.059,0,-131.909	0/1:51:21,30:21:756:30:1044:-78.9144,0,-53.0147	0/1:127:71,56:71:2508:56:1987:-140.868,0,-187.741	0/1:106:55,51:55:1976:51:1815:-131.722,0,-146.205	0/1:150:88,62:88:3133:62:2220:-154.91,0,-237.041	0/1:50:25,25:25:885:25:878:-64.2758,0,-64.915	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:71:35,36:35:1256:36:1266:-92.8634,0,-91.9722	0/1:94:44,50:44:1571:50:1760:-130.37,0,-113.384	0/1:143:73,70:73:2587:70:2469:-179.412,0,-190.032	0/1:95:42,53:42:1471:53:1851:-138.266,0,-104.083	0/1:30:15,15:15:532:15:514:-37.5496,0,-39.1822	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/1:107:51,56:51:1796:56:1964:-144.785,0,-129.709	0/1:28:10,18:10:356:18:642:-49.6757,0,-23.9524	0/0:64:64,0:64:2265:0:0:0,-19.2659,-204.111	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/1:86:34,52:34:1166:52:1808:-137.097,0,-79.3507	0/1:50:11,39:11:387:39:1388:-110.158,0,-20.1144	0/0:136:136,0:136:4872:0:0:0,-40.9401,-438.633	0/0:76:75,1:75:2641:1:36:0,-19.28,-234.339
chr01	19986695	.	G	A	37614.1	PASS	AB=0.506624;ABP=4.67883;AC=36;AF=0.191489;AN=188;AO=2235;CIGAR=1X;DP=10227;DPB=10227;DPRA=1.34546;EPP=4856.25;EPPR=17348.7;GTI=2;LEN=1;MEANALT=1.02381;MQM=59.9566;MQMR=59.9962;NS=94;NUMALT=1;ODDS=1.5269;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79959;QR=285298;RO=7988;RPL=2235;RPP=4856.25;RPPR=17340;RPR=0;RUN=1;SAF=2235;SAP=4856.25;SAR=0;SRF=7987;SRP=17340;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:100:100,0:100:3544:0:0:0,-30.103,-319.169	0/1:86:51,35:51:1824:35:1238:-85.8334,0,-138.553	0/0:287:287,0:287:10278:0:0:0,-86.3956,-924.943	0/0:264:264,0:264:9426:0:0:0,-79.4719,-848.301	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.324	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:83:41,42:41:1468:42:1504:-110.658,0,-107.431	0/0:118:117,0:117:4179:0:0:0,-35.2205,-375.933	0/0:152:152,0:152:5400:0:0:0,-45.7566,-486.133	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:135:135,0:135:4785:0:0:0,-40.639,-430.81	0/1:91:46,45:46:1640:45:1609:-117.705,0,-120.495	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/1:74:30,44:30:1072:44:1567:-119.045,0,-74.5162	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:39:23,16:23:824:16:576:-40.4348,0,-62.7431	0/1:46:32,14:32:1152:14:500:-31.4888,0,-90.1428	0/1:249:126,123:126:4520:123:4412:-322.295,0,-332.01	0/1:188:109,79:109:3877:79:2836:-198.884,0,-292.532	0/1:154:43,111:43:1533:111:3988:-312.75,0,-91.9025	0/0:161:159,2:159:5708:2:72:0,-41.6476,-507.018	0/0:98:91,7:91:3241:7:252:0,-6.47198,-268.882	0/0:164:163,0:163:5832:0:0:0,-49.0679,-524.759	0/1:263:137,126:137:4916:126:4528:-328.514,0,-363.419	0/1:285:134,151:134:4792:151:5412:-401.415,0,-345.643	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:288:288,0:288:10317:0:0:0,-86.6966,-928.451	0/0:189:189,0:189:6771:0:0:0,-56.8947,-609.461	0/0:125:125,0:125:4437:0:0:0,-37.6287,-399.503	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:19:19,0:19:667:0:0:0,-5.71957,-60.3546	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:232:124,108:124:4428:108:3880:-279.554,0,-328.854	0/0:142:142,0:142:5077:0:0:0,-42.7463,-457.073	0/1:47:23,24:23:820:24:860:-63.5734,0,-59.9741	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/1:186:101,85:101:3597:85:3017:-215.769,0,-267.945	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:145:145,0:145:5184:0:0:0,-43.6493,-466.701	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:160:160,0:160:5748:0:0:0,-48.1648,-517.433	0/0:139:139,0:139:4944:0:0:0,-41.8432,-445.111	0/1:169:75,94:75:2671:94:3376:-253.181,0,-189.761	0/1:96:40,56:40:1417:56:2008:-151.965,0,-98.9265	0/1:124:62,62:62:2224:62:2232:-163.816,0,-163.096	0/0:157:157,0:157:5616:0:0:0,-47.2617,-505.562	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/0:74:73,0:73:2616:0:0:0,-21.9752,-235.337	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:147:146,1:146:5206:1:36:0,-40.6531,-465.082	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/0:143:143,0:143:5128:0:0:0,-43.0473,-461.661	0/0:119:118,1:118:4220:1:36:0,-32.2243,-376.383	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:198:197,1:197:7051:1:36:0,-56.0057,-631.052	0/0:179:179,0:179:6355:0:0:0,-53.8844,-572.039	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:66:66,0:66:2322:0:0:0,-19.868,-209.238	0/0:178:175,3:175:6268:3:108:0,-43.5082,-554.139	0/0:160:160,0:160:5740:0:0:0,-48.1648,-516.715	0/0:50:50,0:50:1770:0:0:0,-15.0515,-159.582	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:46:45,1:45:1607:1:36:0,-10.2491,-141.321	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:199:84,115:84:2996:115:4096:-308.92,0,-209.968	0/1:94:48,46:48:1720:46:1648:-120.312,0,-126.789	0/1:168:104,63:104:3710:63:2245:-151.681,0,-283.463	0/1:131:51,80:51:1813:80:2872:-219.282,0,-124.015	0/1:218:112,106:112:4012:106:3792:-275.852,0,-295.641	0/1:52:24,28:24:864:28:1004:-75.0208,0,-62.429	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:69:29,40:29:1027:40:1407:-106.155,0,-71.9711	0/1:128:61,67:61:2184:67:2392:-176.981,0,-158.294	0/1:260:138,122:138:4921:122:4357:-314.036,0,-364.771	0/1:94:47,47:47:1660:47:1672:-122.47,0,-121.388	0/1:90:44,46:44:1559:46:1652:-121.876,0,-113.508	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:160:89,71:89:3176:71:2533:-180.055,0,-237.9	0/1:41:17,24:17:599:24:864:-65.7403,0,-41.8959	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.488	0/0:106:106,0:106:3779:0:0:0,-31.9092,-340.31	0/0:56:56,0:56:1978:0:0:0,-16.8577,-178.293	0/1:146:72,74:72:2576:74:2639:-193.7,0,-188.117	0/1:91:27,64:27:964:64:2271:-177.257,0,-59.6831	0/0:157:157,0:157:5598:0:0:0,-47.2617,-503.944	0/0:118:118,0:118:4183:0:0:0,-35.5215,-376.653
chr01	19986725	.	T	A	38577.2	PASS	AB=0.506664;ABP=4.74671;AC=34;AF=0.182796;AN=186;AO=2297;CIGAR=1X;DP=9891;DPB=9891;DPRA=1.65219;EPP=4990.88;EPPR=16460.6;GTI=4;LEN=1;MEANALT=1.075;MQM=59.9904;MQMR=60;NS=93;NUMALT=1;ODDS=0.372035;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82124;QR=271408;RO=7587;RPL=0;RPP=4990.88;RPPR=16460.6;RPR=2297;RUN=1;SAF=0;SAP=4990.88;SAR=2297;SRF=0;SRP=16478;SRR=7587;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:140:61,79:61:2181:79:2840:-213.693,0,-154.41	0/0:144:144,0:144:5120:0:0:0,-43.3483,-460.939	0/0:225:225,0:225:8058:0:0:0,-67.7317,-725.234	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.517	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.584	0/1:88:43,45:43:1548:45:1620:-119.599,0,-113.122	0/0:262:262,0:262:9386:0:0:0,-78.8699,-844.698	0/0:121:121,0:121:4325:0:0:0,-36.4246,-389.425	0/0:135:135,0:135:4830:0:0:0,-40.639,-434.851	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.646	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/1:73:33,40:33:1184:40:1440:-107.923,0,-84.8931	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/1:73:33,40:33:1188:40:1439:-107.833,0,-85.2534	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:69:68,0:68:2413:0:0:0,-20.47,-217.193	0/1:79:41,38:41:1476:38:1360:-98.9192,0,-109.355	0/1:33:19,14:19:680:14:489:-34.4049,0,-51.5952	0/1:215:98,117:98:3509:117:4157:-309.592,0,-251.297	0/1:152:77,75:77:2772:75:2661:-193.979,0,-203.964	0/1:108:33,75:33:1184:75:2690:-209.833,0,-74.3571	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/0:49:47,2:47:1677:2:72:0,-7.91375,-144.378	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/1:438:233,205:233:8350:205:7358:-530.414,0,-619.65	0/1:151:68,83:68:2433:83:2971:-222.167,0,-173.768	0/0:55:55,0:55:1942:0:0:0,-16.5566,-175.052	0/0:136:136,0:136:4858:0:0:0,-40.9401,-437.371	0/0:209:204,5:204:7287:5:176:0,-46.7302,-639.693	0/0:141:141,0:141:5030:0:0:0,-42.4452,-452.844	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:241:123,118:123:4424:118:4232:-308.511,0,-325.781	0/0:231:231,0:231:8265:0:0:0,-69.5379,-743.859	0/1:56:26,30:26:928:30:1076:-80.2952,0,-66.9806	.:.:.:.:.:.:.:.	0/1:110:46,64:46:1656:64:2300:-174.147,0,-116.215	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:167:165,0:165:5920:0:0:0,-49.6699,-532.621	0/0:86:86,0:86:3046:0:0:0,-25.8886,-274.368	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:112:112,0:112:4013:0:0:0,-33.7154,-361.357	0/0:154:154,0:154:5490:0:0:0,-46.3586,-494.226	0/1:189:95,94:95:3397:94:3357:-245.451,0,-249.049	0/1:136:63,73:63:2260:73:2600:-193.306,0,-162.723	0/1:227:125,102:125:4477:102:3660:-261.269,0,-334.763	0/0:117:117,0:117:4185:0:0:0,-35.2205,-376.83	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:167:166,1:166:5923:1:36:0,-46.6737,-529.577	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:136:136,0:136:4873:0:0:0,-40.9401,-438.72	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/0:103:103,0:103:3677:0:0:0,-31.0061,-331.132	0/0:133:133,0:133:4773:0:0:0,-40.037,-429.724	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:160:160,0:160:5703:0:0:0,-48.1648,-513.385	0/0:275:274,1:274:9762:1:36:0,-79.185,-874.924	0/0:95:95,0:95:3386:0:0:0,-28.5978,-304.953	0/0:87:87,0:87:3113:0:0:0,-26.1896,-280.395	0/0:161:155,6:155:5568:6:216:0,-28.6753,-481.451	0/0:126:125,1:125:4484:1:36:0,-34.3315,-400.13	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:124:70,54:70:2512:54:1914:-135.208,0,-189.004	0/1:69:34,35:34:1224:35:1252:-92.214,0,-89.696	0/1:176:109,67:109:3916:67:2388:-162.195,0,-299.65	0/1:199:87,111:87:3109:111:3958:-296.445,0,-220.072	0/1:125:67,58:67:2378:58:2067:-148.672,0,-176.646	0/1:194:98,96:98:3505:96:3448:-252.132,0,-257.259	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:178:80,98:80:2827:98:3511:-262.616,0,-201.082	0/1:114:45,69:45:1612:69:2442:-185.526,0,-111.053	0/1:209:115,94:115:4106:94:3357:-239.43,0,-306.807	0/1:106:49,56:49:1764:56:1994:-147.766,0,-127.076	0/1:78:39,39:39:1400:39:1404:-103.179,0,-102.819	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:176:99,77:99:3556:77:2742:-194.041,0,-267.266	0/1:51:23,28:23:828:28:1004:-75.3233,0,-59.4916	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.964	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/1:78:42,35:42:1508:35:1248:-89.0858,0,-112.475	0/1:87:27,60:27:957:60:2141:-166.766,0,-60.2543	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.441	0/0:126:125,0:125:4423:0:0:0,-37.6287,-397.879
chr01	20506943	.	TGT	AGC,TGC	214996	PASS	AB=0.501454,0.492955;ABP=3.09238,4.93796;AC=154,34;AF=0.819149,0.180851;AN=188;AO=7827,2217;CIGAR=1X1M1X,2M1X;DP=10086;DPB=10085.7;DPRA=108.441,1.7701;EPP=16903.7,4782.48;EPPR=18.2106;GTI=5;LEN=3,1;MEANALT=1.73118,2.425;MQM=59.5646,59.7149;MQMR=60;NS=94;NUMALT=2;ODDS=1.14552;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=276179,78563;QR=244;RO=7;RPL=7816,2213;RPP=16903.7,4782.48;RPPR=18.2106;RPR=11,4;RUN=1,1;SAF=7825,2217;SAP=16981.8,4817.16;SAR=2,0;SRF=7;SRP=18.2106;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32,0:0:0:32,0:1142,0:-103.081,-9.63296,0,-103.081,-9.63296,-103.081	1/2:128:0,58,69:0:0:58,69:2036,2442:-364.492,-198.904,-181.444,-165.581,0,-144.81	1/1:75:0,75,0:0:0:75,0:2663,0:-239.894,-22.5773,0,-239.894,-22.5773,-239.894	1/1:254:0,252,1:0:0:252,1:8804,36:-791.859,-75.8596,0,-788.921,-72.8772,-788.62	1/1:38:0,38,0:0:0:38,0:1328,0:-119.811,-11.4391,0,-119.811,-11.4391,-119.811	1/1:83:0,80,0:0:0:80,0:2817,0:-253.383,-24.0824,0,-253.383,-24.0824,-253.383	1/2:118:0,65,53:0:0:65,53:2272,1896:-339.679,-154.957,-135.39,-185.076,0,-169.122	1/1:210:0,210,0:0:0:210,0:7407,0:-666.532,-63.2163,0,-666.532,-63.2163,-666.532	1/1:106:0,105,0:0:0:105,0:3707,0:-333.131,-31.6082,0,-333.131,-31.6082,-333.131	1/1:48:0,48,0:0:0:48,0:1674,0:-150.881,-14.4494,0,-150.881,-14.4494,-150.881	1/1:103:0,103,0:0:0:103,0:3650,0:-328.696,-31.0061,0,-328.696,-31.0061,-328.696	1/1:104:0,104,0:0:0:104,0:3667,0:-330.191,-31.3071,0,-330.191,-31.3071,-330.191	1/2:88:0,54,34:0:0:54,34:1888,1220:-253.334,-99.8718,-83.6162,-153.817,0,-143.582	1/1:145:0,145,0:0:0:145,0:5146,0:-463.147,-43.6494,0,-463.147,-43.6494,-463.147	1/2:83:0,39,44:0:0:39,44:1371,1553:-238.379,-126.812,-115.072,-111.919,0,-98.6732	1/1:75:0,75,0:0:0:75,0:2641,0:-237.911,-22.5773,0,-237.911,-22.5773,-237.911	1/1:111:0,110,0:0:0:110,0:3856,0:-346.86,-33.1133,0,-346.86,-33.1133,-346.86	1/2:62:0,28,34:0:0:28,34:980,1200:-177.777,-98.0458,-89.617,-80.0822,0,-69.8472	1/2:59:0,29,30:0:0:29,30:1030,1058:-170.412,-86.4819,-77.7521,-84.284,0,-75.2531	1/2:119:1,68,50:1:36:68,50:2409,1792:-339.148,-143.211,-125.679,-193.297,0,-181.183	1/2:193:0,88,102:0:0:88,102:3101,3605:-546.129,-293.661,-267.17,-252.532,0,-221.827	1/2:88:0,39,49:0:0:39,49:1385,1744:-255.34,-142.493,-130.753,-113.202,0,-98.4516	1/1:41:0,41,0:0:0:41,0:1450,0:-130.792,-12.3422,0,-130.792,-12.3422,-130.792	1/2:92:0,82,10:0:0:82,10:2896,351:-264.736,-28.9117,-4.22727,-236.175,0,-233.165	1/1:94:0,94,0:0:0:94,0:3329,0:-299.776,-28.2968,0,-299.776,-28.2968,-299.776	1/2:404:3,170,231:3:108:170,231:5998,8195:-1145.77,-658.428,-616.066,-479.421,0,-418.696	1/1:198:0,196,0:0:0:196,0:6850,0:-616.16,-59.0019,0,-616.16,-59.0019,-616.16	1/1:49:0,49,0:0:0:49,0:1748,0:-157.585,-14.7505,0,-157.585,-14.7505,-157.585	1/1:224:0,222,1:0:0:222,1:7852,36:-705.557,-66.8287,0,-702.619,-63.8263,-702.318	1/1:153:0,153,0:0:0:153,0:5381,0:-483.494,-46.0576,0,-483.494,-46.0576,-483.494	1/1:165:0,164,0:0:0:164,0:5835,0:-524.406,-49.3689,0,-524.406,-49.3689,-524.406	1/1:4:0,4,0:0:0:4,0:144,0:-13.3089,-1.20412,0,-13.3089,-1.20412,-13.3089	1/1:10:0,10,0:0:0:10,0:358,0:-32.549,-3.0103,0,-32.549,-3.0103,-32.549	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:309:0,155,154:0:0:155,154:5488,5478:-893.567,-446.751,-400.091,-447.171,0,-400.812	1/1:252:0,252,0:0:0:252,0:8877,0:-798.858,-75.8596,0,-798.858,-75.8596,-798.858	1/2:71:1,39,31:1:28:39,31:1386,1103:-200.041,-87.7492,-78.2254,-110.449,0,-103.334	1/1:11:0,11,0:0:0:11,0:383,0:-34.8021,-3.31133,0,-34.8021,-3.31133,-34.8021	1/2:138:0,64,72:0:0:64,72:2250,2554:-391.155,-208.084,-188.818,-183.083,0,-161.409	1/1:39:0,39,0:0:0:39,0:1368,0:-123.412,-11.7402,0,-123.412,-11.7402,-123.412	1/1:117:0,117,0:0:0:117,0:4130,0:-371.868,-35.2205,0,-371.868,-35.2205,-371.868	1/1:134:0,133,0:0:0:133,0:4673,0:-420.336,-40.037,0,-420.336,-40.037,-420.336	1/1:98:0,98,0:0:0:98,0:3425,0:-308.297,-29.5009,0,-308.297,-29.5009,-308.297	1/1:121:0,120,0:0:0:120,0:4232,0:-380.672,-36.1236,0,-380.672,-36.1236,-380.672	1/1:103:0,103,0:0:0:103,0:3674,0:-330.843,-31.0061,0,-330.843,-31.0061,-330.843	1/2:249:0,115,134:0:0:115,134:4008,4749:-713.102,-387.228,-352.61,-326.225,0,-285.887	1/2:139:0,72,65:0:0:72,65:2550,2305:-395.493,-187.779,-166.105,-207.709,0,-188.142	1/2:185:2,80,102:2:72:80,102:2840,3611:-518.917,-288.127,-269.919,-225.512,0,-200.682	1/1:63:0,63,0:0:0:63,0:2200,0:-198.191,-18.9649,0,-198.191,-18.9649,-198.191	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/1:103:0,103,0:0:0:103,0:3644,0:-327.848,-31.0061,0,-327.848,-31.0061,-327.848	1/1:39:0,39,0:0:0:39,0:1375,0:-124.046,-11.7402,0,-124.046,-11.7402,-124.046	1/1:12:0,12,0:0:0:12,0:427,0:-38.5767,-3.61236,0,-38.5767,-3.61236,-38.5767	1/1:118:0,118,0:0:0:118,0:4170,0:-375.431,-35.5215,0,-375.431,-35.5215,-375.431	1/1:31:0,31,0:0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chr01	20507028	.	T	C	181059	PASS	AB=0.49484;ABP=3.90668;AC=155;AF=0.824468;AN=188;AO=8398;CIGAR=1X;DP=10383;DPB=10383;DPRA=0;EPP=18239;EPPR=4311.21;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9864;MQMR=59.9637;NS=94;NUMALT=1;ODDS=4.8548;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=299545;QR=70979;RO=1984;RPL=8398;RPP=18239;RPPR=4311.21;RPR=0;RUN=1;SAF=0;SAP=18239;SAR=8398;SRF=0;SRP=4311.21;SRR=1984;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:106:0,106:0:0:106:3749:-337.609,-31.9092,0	0/1:104:56,48:56:1996:48:1705:-122.427,0,-148.607	1/1:215:0,215:0:0:215:7631:-686.829,-64.7215,0	1/1:255:0,255:0:0:255:9059:-815.289,-76.7627,0	1/1:86:0,86:0:0:86:3072:-276.709,-25.8886,0	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	0/1:75:39,36:39:1400:36:1296:-94.3667,0,-103.722	1/1:137:3,134:3:108:134:4786:-420.819,-31.1659,0	1/1:174:0,174:0:0:174:6205:-558.548,-52.3792,0	1/1:88:0,88:0:0:88:3145:-283.274,-26.4906,0	1/1:50:0,50:0:0:50:1777:-160.211,-15.0515,0	1/1:112:0,112:0:0:112:3985:-358.84,-33.7154,0	0/1:75:37,38:37:1316:38:1345:-98.7709,0,-96.1646	1/1:50:0,50:0:0:50:1769:-159.491,-15.0515,0	0/1:70:30,40:30:1080:40:1436:-108.466,0,-76.4412	1/1:78:0,78:0:0:78:2793:-251.61,-23.4803,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:37:18,19:18:648:19:680:-50.3911,0,-47.5138	0/1:30:17,13:17:604:13:460:-32.7045,0,-45.6597	0/1:289:152,137:152:5460:137:4889:-353.164,0,-404.528	0/1:201:98,103:98:3516:103:3665:-269.547,0,-256.142	0/1:141:109,32:109:3908:32:1148:-61.1846,0,-309.468	1/1:160:1,159:1:36:159:5666:-506.461,-44.5665,0	1/1:137:12,125:12:428:125:4480:-364.51,-2.3823,0	1/1:140:1,139:1:36:139:4973:-444.119,-38.5459,0	0/1:265:133,132:133:4749:132:4732:-346.265,0,-347.783	1/1:276:0,276:0:0:276:9855:-886.891,-83.0843,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:326:0,326:0:0:326:11637:-1047.2,-98.1358,0	1/1:151:1,150:1:36:150:5373:-480.101,-41.8573,0	1/1:105:0,105:0:0:105:3748:-337.521,-31.6082,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:18:0,18:0:0:18:625:-56.5724,-5.41854,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:242:110,132:110:3948:132:4702:-350.49,0,-282.661	1/1:172:0,172:0:0:172:6138:-552.518,-51.7772,0	0/1:47:21,26:21:756:26:936:-70.4111,0,-54.2188	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/1:156:81,75:81:2889:75:2688:-195.204,0,-213.284	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:207:1,206:1:36:206:7350:-657.949,-58.7149,0	1/1:80:0,80:0:0:80:2861:-257.726,-24.0824,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:160:0,160:0:0:160:5717:-514.647,-48.1648,0	1/1:138:0,138:0:0:138:4952:-445.828,-41.5421,0	0/1:187:77,110:77:2764:110:3941:-298.587,0,-191.689	0/1:119:44,75:44:1576:75:2662:-204,0,-106.309	0/1:109:54,55:54:1914:55:1946:-141.237,0,-139.721	1/1:172:0,171:0:0:171:6091:-547.934,-51.4761,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:152:0,152:0:0:152:5434:-489.187,-45.7566,0	1/1:94:0,94:0:0:94:3349:-301.626,-28.2968,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:209:0,209:0:0:209:7467:-672.07,-62.9153,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	1/1:88:0,88:0:0:88:3136:-282.465,-26.4906,0	1/1:94:1,93:1:36:93:3325:-295.868,-24.6985,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:211:0,211:0:0:211:7511:-676.032,-63.5173,0	1/1:191:2,189:2:72:189:6668:-593.363,-50.66,0	1/1:55:0,55:0:0:55:1957:-176.404,-16.5567,0	1/1:100:0,100:0:0:100:3539:-318.715,-30.103,0	1/1:247:4,243:4:144:243:8673:-767.248,-61.0408,0	1/1:209:0,209:0:0:209:7462:-671.623,-62.9153,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:95:0,95:0:0:95:3381:-304.503,-28.5979,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:150:73,77:73:2590:77:2745:-202.137,0,-188.192	0/1:66:39,27:39:1396:27:968:-67.5694,0,-106.071	0/1:209:98,111:98:3498:111:3977:-295.204,0,-252.112	1/1:123:0,123:0:0:123:4376:-394.015,-37.0267,0	0/1:106:55,51:55:1980:51:1809:-131.18,0,-146.537	0/1:132:72,60:72:2584:60:2129:-152.141,0,-193.073	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:147:70,77:70:2500:77:2749:-203.354,0,-181.002	0/1:129:53,76:53:1908:76:2698:-204.229,0,-133.165	0/1:256:128,128:128:4523:128:4560:-333.312,0,-330.175	0/1:70:22,48:22:788:48:1694:-131.67,0,-50.1727	0/1:85:48,37:48:1724:37:1328:-94.2347,0,-129.858	1/1:48:0,48:0:0:48:1716:-154.725,-14.4494,0	0/1:146:74,72:74:2660:72:2576:-188.139,0,-195.695	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	1/1:82:0,82:0:0:82:2900:-261.235,-24.6845,0	1/1:104:0,104:0:0:104:3732:-336.08,-31.3071,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:70:42,28:42:1512:28:991:-68.4314,0,-115.303	0/1:100:67,33:67:2388:33:1188:-77.1256,0,-185.075	1/1:194:0,194:0:0:194:6926:-623.405,-58.3998,0	1/1:124:0,124:0:0:124:4432:-399.052,-37.3277,0
chr01	20514794	.	T	G	183613	PASS	AB=0.479106;ABP=19.9788;AC=155;AF=0.824468;AN=188;AO=8593;CIGAR=1X;DP=10938;DPB=10938;DPRA=0;EPP=18662.5;EPPR=5082.09;GTI=3;LEN=1;MEANALT=1.02128;MQM=59.5563;MQMR=59.9723;NS=94;NUMALT=1;ODDS=0.890912;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=306237;QR=83908;RO=2343;RPL=0;RPP=18662.5;RPPR=5082.09;RPR=8593;RUN=1;SAF=0;SAP=18662.5;SAR=8593;SRF=0;SRP=5090.77;SRR=2343;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1976:-178.104,-16.5567,0	0/1:218:126,92:126:4498:92:3253:-227.284,0,-339.362	1/1:326:0,326:0:0:326:11634:-1046.72,-98.1358,0	1/1:260:0,260:0:0:260:9238:-831.333,-78.2678,0	1/1:108:0,108:0:0:108:3864:-347.915,-32.5112,0	1/1:83:0,83:0:0:83:2942:-264.908,-24.9855,0	0/1:179:88,91:88:3140:91:3209:-235.119,0,-228.939	1/1:249:0,249:0:0:249:8857:-796.718,-74.9565,0	1/1:85:0,85:0:0:85:3043:-274.057,-25.5876,0	1/1:145:0,145:0:0:145:5173:-465.652,-43.6494,0	1/1:44:0,44:0:0:44:1578:-142.311,-13.2453,0	1/1:56:0,56:0:0:56:2000:-180.273,-16.8577,0	0/1:55:27,28:27:964:28:1004:-74.0947,0,-70.5202	1/1:55:0,55:0:0:55:1943:-175.12,-16.5567,0	0/1:32:13,19:13:468:19:669:-50.901,0,-32.8267	1/1:32:0,32:0:0:32:1139:-102.806,-9.63296,0	1/1:51:0,51:0:0:51:1819:-163.791,-15.3525,0	0/1:33:17,16:17:604:16:567:-41.4267,0,-44.7566	0/1:41:23,18:23:828:18:635:-45.1171,0,-62.5019	0/1:323:166,156:166:5944:156:5603:-407.06,0,-437.776	0/1:165:74,91:74:2664:91:3248:-242.815,0,-190.335	0/1:154:104,50:104:3713:50:1784:-114.479,0,-288.012	1/1:50:0,50:0:0:50:1787:-160.856,-15.0515,0	1/1:201:7,194:7:252:194:6918:-599.59,-37.4781,0	1/1:117:0,117:0:0:117:4184:-375.826,-35.2205,0	0/1:336:163,173:163:5852:173:6203:-457.203,0,-425.64	1/1:240:0,240:0:0:240:8524:-766.337,-72.2472,0	1/1:25:0,25:0:0:25:891:-80.3683,-7.52575,0	1/1:322:0,322:0:0:322:11520:-1036.3,-96.9317,0	1/1:165:0,165:0:0:165:5894:-530.523,-49.67,0	1/1:140:0,140:0:0:140:5013:-450.861,-42.1442,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:23:0,23:0:0:23:807:-72.9413,-6.92369,0	0/1:11:3,8:3:108:8:279:-22.0982,0,-6.76384	1/1:11:0,11:0:0:11:392:-35.3826,-3.31133,0	1/1:18:0,18:0:0:18:616:-55.7589,-5.41854,0	0/1:163:91,72:91:3263:72:2564:-181.939,0,-244.822	1/1:238:1,237:1:36:237:8476:-758.86,-68.0469,0	0/1:79:46,33:46:1652:33:1171:-81.8814,0,-125.187	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:214:112,102:112:4024:102:3637:-262.973,0,-297.927	1/1:24:0,24:0:0:24:856:-77.3565,-7.22472,0	1/1:219:0,219:0:0:219:7817:-703.242,-65.9256,0	1/1:38:0,38:0:0:38:1360:-122.698,-11.4391,0	1/1:43:0,43:0:0:43:1516:-136.703,-12.9443,0	1/1:147:0,147:0:0:147:5208:-468.139,-44.2514,0	1/1:204:0,204:0:0:204:7288:-655.893,-61.4101,0	0/1:216:124,92:124:4444:92:3272:-229.636,0,-334.481	0/1:147:75,72:75:2673:72:2580:-188.193,0,-196.563	0/1:162:71,91:71:2548:91:3248:-243.76,0,-180.803	1/1:267:0,267:0:0:267:9490:-853.753,-80.375,0	1/1:14:0,14:0:0:14:504:-45.5677,-4.21442,0	1/1:154:0,154:0:0:154:5515:-496.409,-46.3586,0	1/1:53:0,53:0:0:53:1896:-170.91,-15.9546,0	1/1:32:0,32:0:0:32:1152:-103.957,-9.63296,0	1/1:187:0,187:0:0:187:6620:-595.825,-56.2926,0	1/1:46:0,46:0:0:46:1644:-148.208,-13.8474,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	1/1:81:0,81:0:0:81:2898:-261.035,-24.3834,0	1/1:92:0,92:0:0:92:3290:-296.218,-27.6948,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:162:0,162:0:0:162:5804:-522.284,-48.7669,0	1/1:231:0,231:0:0:231:8249:-742.236,-69.5379,0	1/1:75:0,75:0:0:75:2649:-238.632,-22.5773,0	1/1:97:0,97:0:0:97:3463:-311.848,-29.1999,0	1/1:194:3,190:3:108:190:6746:-596.874,-48.3834,0	1/1:197:1,196:1:36:196:7000:-626.253,-55.7046,0	1/1:14:0,14:0:0:14:504:-45.6935,-4.21442,0	1/1:138:0,138:0:0:138:4915:-442.43,-41.5421,0	1/1:40:0,40:0:0:40:1417:-127.824,-12.0412,0	1/1:41:0,41:0:0:41:1440:-129.887,-12.3422,0	0/1:158:97,61:97:3476:61:2151:-146.24,0,-265.489	0/1:94:58,36:58:2061:36:1245:-84.0484,0,-157.463	0/1:250:122,128:122:4359:128:4583:-337.35,0,-317.198	1/1:184:1,183:1:36:183:6548:-585.058,-51.7912,0	0/1:248:110,138:110:3940:138:4921:-368.308,0,-280.136	0/1:131:59,72:59:2112:72:2526:-188.114,0,-150.914	1/1:16:0,16:0:0:16:568:-51.4437,-4.81648,0	0/1:131:67,64:67:2392:64:2292:-167.09,0,-176.103	0/1:201:114,87:114:4092:87:3086:-217.451,0,-307.958	0/1:324:145,179:145:5197:179:6384:-477.04,0,-370.333	0/1:73:38,35:38:1356:35:1243:-90.1596,0,-100.365	0/1:27:18,9:18:644:9:324:-21.378,0,-50.1628	1/1:48:0,48:0:0:48:1701:-153.369,-14.4494,0	0/1:89:42,47:42:1508:47:1666:-123.416,0,-109.223	0/1:36:17,19:17:604:19:680:-50.658,0,-43.8535	1/1:48:0,48:0:0:48:1682:-151.279,-14.4494,0	1/1:52:0,52:0:0:52:1851:-166.861,-15.6536,0	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	0/1:103:61,42:61:2196:42:1500:-104.259,0,-166.899	0/1:55:43,12:43:1540:12:423:-21.8484,0,-122.336	1/1:116:0,116:0:0:116:4142:-372.857,-34.9195,0	1/1:73:0,73:0:0:73:2611:-235.23,-21.9752,0
chr01	20514804	.	GCC	ACT,GCT	238516	PASS	AB=0.495573,0.501703;ABP=3.76009,3.12122;AC=155,33;AF=0.824468,0.175532;AN=188;AO=8710,2223;CIGAR=1X1M1X,2M1X;DP=10961;DPB=10961;DPRA=0,1.41515;EPP=18364.7,4675.11;EPPR=5.18177;GTI=2;LEN=3,1;MEANALT=1.68085,2.28205;MQM=59.5402,59.9663;MQMR=60;NS=94;NUMALT=2;ODDS=0.464555;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=307407,78494;QR=36;RO=1;RPL=8646,2205;RPP=18364.7,4675.11;RPPR=5.18177;RPR=64,18;RUN=1,1;SAF=0,0;SAP=18916.5,4830.19;SAR=8710,2223;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55,0:0:0:55,0:1961,0:-176.756,-16.5567,0,-176.756,-16.5567,-176.756	1/2:211:1,94,115:1:36:94,115:3311,4040:-595.112,-325.913,-300.554,-266.593,0,-234.912	1/1:330:0,330,0:0:0:330,0:11642,0:-1047.46,-99.3399,0,-1047.46,-99.3399,-1047.46	1/1:265:0,265,0:0:0:265,0:9347,0:-841.041,-79.773,0,-841.041,-79.773,-841.041	1/1:113:0,113,0:0:0:113,0:3997,0:-359.828,-34.0164,0,-359.828,-34.0164,-359.828	1/1:84:0,84,0:0:0:84,0:2972,0:-267.671,-25.2865,0,-267.671,-25.2865,-267.671	1/2:180:0,92,86:0:0:92,86:3223,3014:-507.576,-245.356,-217.661,-262.322,0,-236.434	1/1:257:0,257,0:0:0:257,0:9038,0:-812.203,-77.3647,0,-812.203,-77.3647,-812.203	1/1:86:0,86,0:0:0:86,0:3018,0:-271.808,-25.8886,0,-271.808,-25.8886,-271.808	1/1:148:0,147,0:0:0:147,0:5254,0:-472.761,-44.2514,0,-472.761,-44.2514,-472.761	1/1:44:0,44,0:0:0:44,0:1530,0:-137.988,-13.2453,0,-137.988,-13.2453,-137.988	1/1:57:0,56,1:0:0:56,1:1978,36:-177.934,-16.8577,0,-174.996,-13.5604,-174.695	1/2:54:0,28,26:0:0:28,26:994,904:-154.815,-73.8451,-65.4163,-81.3207,0,-73.4939	1/1:55:0,55,0:0:0:55,0:1932,0:-174.132,-16.5567,0,-174.132,-16.5567,-174.132	1/2:31:0,19,12:0:0:19,12:680,424:-90.3389,-34.8841,-29.1645,-55.8098,0,-52.1974	1/1:34:0,34,0:0:0:34,0:1210,0:-108.998,-10.235,0,-108.998,-10.235,-108.998	1/1:52:0,52,0:0:0:52,0:1827,0:-164.684,-15.6536,0,-164.684,-15.6536,-164.684	1/2:30:0,16,14:0:0:16,14:571,500:-87.6716,-41.1218,-36.3053,-46.9067,0,-42.6923	1/2:41:0,18,23:0:0:18,23:641,828:-120.146,-67.9204,-62.5019,-52.5834,0,-45.6597	1/2:321:0,158,163:0:0:158,163:5603,5759:-925.789,-469.325,-421.762,-456.818,0,-407.75	1/2:166:0,93,73:0:0:93,73:3230,2605:-475.239,-212.722,-184.726,-262.87,0,-240.895	1/2:146:0,51,95:0:0:51,95:1813,3326:-418.702,-270.963,-255.61,-148.093,0,-119.495	1/1:52:0,51,0:0:0:51,0:1794,0:-161.13,-15.3525,0,-161.13,-15.3525,-161.13	1/1:204:0,198,6:0:0:198,6:7021,208:-631.523,-59.6039,0,-614.616,-42.351,-612.81	1/1:116:0,116,0:0:0:116,0:4100,0:-369.139,-34.9195,0,-369.139,-34.9195,-369.139	1/2:337:0,179,157:0:0:179,157:6289,5589:-967.491,-455.659,-401.774,-511.975,0,-464.713	1/1:243:0,241,0:0:0:241,0:8465,0:-760.186,-72.5482,0,-760.186,-72.5482,-760.186	1/1:25:0,25,0:0:0:25,0:875,0:-79.0164,-7.52575,0,-79.0164,-7.52575,-79.0164	1/1:329:0,328,0:0:0:328,0:11620,0:-1045.1,-98.7378,0,-1045.1,-98.7378,-1045.1	1/1:165:0,165,0:0:0:165,0:5872,0:-528.475,-49.67,0,-528.475,-49.67,-528.475	1/1:140:0,140,0:0:0:140,0:4962,0:-446.596,-42.1442,0,-446.596,-42.1442,-446.596	1/1:5:0,5,0:0:0:5,0:178,0:-16.3686,-1.50515,0,-16.3686,-1.50515,-16.3686	1/1:23:0,23,0:0:0:23,0:810,0:-73.2142,-6.92369,0,-73.2142,-6.92369,-73.2142	1/2:11:0,8,3:0:0:8,3:281,93:-30.6472,-7.77364,-5.3654,-23.1946,0,-22.2915	1/1:11:0,11,0:0:0:11,0:374,0:-33.8904,-3.31133,0,-33.8904,-3.31133,-33.8904	1/1:18:0,17,0:0:0:17,0:607,0:-54.649,-5.11751,0,-54.649,-5.11751,-54.649	1/2:162:0,75,87:0:0:75,87:2653,3085:-467.773,-251.689,-229.111,-216.439,0,-190.249	1/1:243:0,241,1:0:0:241,1:8491,36:-763.694,-72.5482,0,-760.756,-69.5709,-760.455	1/2:78:0,33,45:0:0:33,45:1144,1600:-223.692,-130.744,-120.81,-93.2984,0,-79.752	1/2:9:0,1,8:0:0:1,8:36,284:-26.4331,-23.4951,-23.1941,-3.29724,0,-0.889005	1/2:201:0,101,100:0:0:101,100:3566,3527:-577.896,-287.538,-257.134,-290.711,0,-260.608	1/1:24:0,24,0:0:0:24,0:862,0:-77.8977,-7.22472,0,-77.8977,-7.22472,-77.8977	1/1:222:0,222,0:0:0:222,0:7795,0:-701.292,-66.8287,0,-701.292,-66.8287,-701.292	1/1:38:0,38,0:0:0:38,0:1365,0:-123.148,-11.4391,0,-123.148,-11.4391,-123.148	1/1:43:0,43,0:0:0:43,0:1495,0:-134.834,-12.9443,0,-134.834,-12.9443,-134.834	1/1:147:0,146,0:0:0:146,0:5058,0:-454.862,-43.9504,0,-454.862,-43.9504,-454.862	1/1:208:0,207,0:0:0:207,0:7324,0:-658.797,-62.3132,0,-658.797,-62.3132,-658.797	1/2:215:0,96,119:0:0:96,119:3389,4172:-615.149,-339.215,-310.316,-276.285,0,-240.463	1/2:143:0,73,69:0:0:73,69:2569,2434:-407.471,-198.34,-176.365,-209.28,0,-188.509	1/2:159:0,91,68:0:0:91,68:3230,2414:-460.202,-197.043,-169.649,-263.513,0,-243.043	1/1:272:0,271,0:0:0:271,0:9568,0:-860.686,-81.5791,0,-860.686,-81.5791,-860.686	1/1:15:0,15,0:0:0:15,0:535,0:-48.3542,-4.51545,0,-48.3542,-4.51545,-48.3542	1/1:153:0,153,0:0:0:153,0:5415,0:-487.435,-46.0576,0,-487.435,-46.0576,-487.435	1/1:54:0,54,0:0:0:54,0:1914,0:-172.528,-16.2556,0,-172.528,-16.2556,-172.528	1/1:32:0,32,0:0:0:32,0:1147,0:-103.507,-9.63296,0,-103.507,-9.63296,-103.507	1/1:193:0,193,0:0:0:193,0:6759,0:-608.349,-58.0988,0,-608.349,-58.0988,-608.349	1/1:46:0,46,0:0:0:46,0:16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chr01	20542221	.	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chr01	20542252	.	C	A,G	163149	PASS	AB=0.492034,0.507255;ABP=10.7596,9.43761;AC=94,94;AF=0.5,0.5;AN=188;AO=6918,7132;CIGAR=1X,1X;DP=14060;DPB=14060;DPRA=0,0;EPP=15025.3,15490;EPPR=9.52472;GTI=0;LEN=1,1;MEANALT=2.07447,2.07447;MQM=27.0426,27.2486;MQMR=31.6667;NS=94;NUMALT=2;ODDS=118.922;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=247519,254670;QR=108;RO=3;RPL=6918,7132;RPP=15025.3,15490;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=15025.3,15490;SAR=6918,7132;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,28,10:0:0:28,10:999,356:-75.7088,-20.7014,-12.2725,-55.2657,0,-52.2554	1/2:161:1,89,71:1:36:89,71:3185,2532:-346.205,-146.009,-121.728,-197.948,0,-179.085	1/2:144:0,83,60:0:0:83,60:2949,2141:-290.011,-124.952,-99.966,-165.126,0,-147.065	1/2:248:0,111,137:0:0:111,137:3988,4889:-497.06,-283.729,-250.315,-213.585,0,-172.344	1/2:85:0,37,48:0:0:37,48:1328,1708:-170.972,-100.264,-89.1261,-70.9624,0,-56.513	1/2:81:0,37,44:0:0:37,44:1332,1584:-169.132,-95.0032,-83.8651,-74.3924,0,-61.1471	1/2:171:1,79,91:1:36:79,91:2836,3233:-362.51,-184.24,-162.969,-176.022,0,-151.139	1/2:311:0,128,183:0:0:128,183:4540,6538:-634.048,-383.22,-344.689,-251.085,0,-195.997	1/2:68:0,48,20:0:0:48,20:1714,720:-137.391,-41.9756,-27.5262,-95.6771,0,-89.6565	1/2:190:0,91,99:0:0:91,99:3234,3548:-376.978,-204.047,-176.653,-173.184,0,-143.382	1/2:150:0,79,71:0:0:79,71:2823,2527:-299.501,-147.642,-123.861,-152.114,0,-130.741	1/2:108:0,55,53:0:0:55,53:1976,1896:-220.979,-110.992,-94.4353,-110.247,0,-94.2928	1/2:129:0,60,69:0:0:60,69:2144,2432:-275.512,-143.417,-125.355,-132.367,0,-111.596	1/2:173:0,73,100:0:0:73,100:2620,3592:-350.048,-208.946,-186.97,-141.358,0,-111.255	1/2:102:0,39,63:0:0:39,63:1400,2259:-220.056,-132.049,-120.309,-88.2845,0,-69.3196	1/2:108:0,52,55:0:0:52,55:1864,1954:-212.995,-113.624,-97.9707,-99.4377,0,-82.881	1/2:124:0,52,72:0:0:52,72:1864,2570:-255.093,-150.436,-134.782,-104.918,0,-83.244	1/2:88:0,32,56:0:0:32,56:1144,2016:-191.073,-117.415,-107.782,-73.9391,0,-57.0814	1/2:101:0,55,46:0:0:55,46:1956,1644:-216.416,-95.6944,-79.1378,-120.992,0,-107.144	1/2:187:0,85,101:0:0:85,101:3052,3604:-405.306,-211.368,-185.78,-194.01,0,-163.606	1/2:146:0,62,84:0:0:62,84:2228,3000:-312.879,-174.35,-155.686,-138.803,0,-113.516	1/2:120:0,64,56:0:0:64,56:2281,2008:-268.06,-116.63,-97.3642,-151.709,0,-134.851	1/2:155:0,83,72:0:0:83,72:2974,2545:-307.843,-148.885,-123.9,-159.212,0,-137.538	1/2:175:0,77,98:0:0:77,98:2757,3499:-358.677,-204.415,-181.236,-154.522,0,-125.021	1/2:91:0,71,20:0:0:71,20:2535,720:-175.322,-41.5902,-20.2171,-133.99,0,-127.969	1/2:549:0,291,258:0:0:291,258:10385,9225:-1171.74,-534.506,-446.906,-637.503,0,-559.837	1/2:268:0,130,138:0:0:130,138:4658,4944:-536.264,-287.302,-248.168,-249.218,0,-207.675	1/2:39:0,19,20:0:0:19,20:684,720:-78.2922,-41.7546,-36.0351,-36.7929,0,-30.7723	1/2:350:0,184,166:0:0:184,166:6581,5891:-698.906,-344.839,-289.45,-354.323,0,-304.352	1/2:204:0,108,95:0:0:108,95:3835,3393:-403.107,-197.022,-164.511,-206.075,0,-177.477	1/2:174:0,64,110:0:0:64,110:2277,3948:-352.218,-229.784,-210.518,-122.687,0,-89.574	1/2:11:0,3,8:0:0:3,8:108,288:-22.6791,-16.9265,-16.0234,-6.00425,0,-3.59601	1/2:23:0,14,9:0:0:14,9:504,320:-45.8041,-18.9475,-14.7331,-27.1139,0,-24.4046	1/2:6:0,4,2:0:0:4,2:144,72:-13.5845,-4.43028,-3.22616,-9.42659,0,-8.82453	1/2:18:0,13,5:0:0:13,5:449,180:-36.3083,-10.6784,-6.76502,-25.8914,0,-24.3862	1/2:21:0,6,15:0:0:6,15:216,509:-42.2595,-30.5844,-28.7782,-11.9272,0,-7.41177	1/2:317:0,162,155:0:0:162,155:5802,5526:-681.308,-320.349,-271.582,-361.231,0,-314.572	1/2:310:0,117,192:0:0:117,192:4178,6875:-626.062,-401.715,-366.494,-224.337,0,-166.539	1/2:169:0,84,85:0:0:84,85:3000,3041:-364.558,-177.452,-152.165,-187.379,0,-161.792	1/2:5:0,2,3:0:0:2,3:72,104:-10.9448,-6.44978,-5.84772,-4.76974,0,-3.86665	1/2:197:0,93,104:0:0:93,104:3340,3727:-421.952,-216.888,-188.893,-205.336,0,-174.029	1/2:90:0,32,58:0:0:32,58:1148,2060:-181.142,-120.112,-110.479,-61.282,0,-43.8223	1/2:132:0,72,60:0:0:72,60:2572,2140:-262.499,-124.581,-102.907,-138.174,0,-120.112	1/2:107:0,59,48:0:0:59,48:2113,1724:-214.68,-100.31,-82.5488,-114.628,0,-100.179	1/2:102:0,47,55:0:0:47,55:1688,1967:-206.427,-115.402,-101.254,-91.2815,0,-74.7248	1/2:100:0,66,34:0:0:66,34:2372,1216:-196.988,-70.6266,-50.7586,-126.619,0,-116.384	1/2:149:0,67,82:0:0:67,82:2408,2919:-305.784,-171.24,-151.071,-134.805,0,-110.12	1/2:214:0,100,114:0:0:100,114:3580,4084:-457.083,-236.563,-206.46,-220.792,0,-186.474	1/2:206:0,111,95:0:0:111,95:3976,3363:-444.742,-197.254,-163.84,-247.759,0,-219.161	1/2:188:0,109,79:0:0:109,79:3897,2780:-402.926,-162.477,-129.665,-240.717,0,-216.936	1/2:305:0,142,163:0:0:142,163:5075,5823:-612.385,-339.745,-296.999,-272.895,0,-223.827	1/2:16:0,8,8:0:0:8,8:288,288:-32.0217,-16.7607,-14.3525,-15.515,0,-13.1067	1/2:254:0,115,139:0:0:115,139:4112,4984:-521.005,-291.385,-256.767,-229.88,0,-188.037	1/2:71:0,36,35:0:0:36,35:1284,1250:-141.124,-72.75,-61.9129,-68.6279,0,-58.0919	1/2:31:0,19,12:0:0:19,12:680,432:-63.6208,-2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chr01	20542262	.	TTC	TTT,CTT	188435	PASS	AB=0.743087,0.255448;ABP=2805.93,2839.82;AC=156,32;AF=0.829787,0.170213;AN=188;AO=12687,1415;CIGAR=2M1X,1X1M1X;DP=14123;DPB=14123;DPRA=0,1.30248;EPP=27552.5,3075.64;EPPR=13.8677;GTI=5;LEN=1,3;MEANALT=1.58511,2.225;MQM=26.3195,33.9011;MQMR=54.4;NS=94;NUMALT=2;ODDS=0.268479;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=454328,50292;QR=172;RO=5;RPL=12687,1415;RPP=27552.5,3075.64;RPPR=13.8677;RPR=0,0;RUN=1,1;SAF=0,0;SAP=27552.5,3075.64;SAR=12687,1415;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40,0:0:0:40,0:1440,0:-92.243,-12.0412,0,-92.243,-12.0412,-92.243	1/2:163:0,117,46:0:0:117,46:4200,1628:-355.963,-116.457,-81.2368,-239.805,0,-225.957	1/1:143:0,142,0:0:0:142,0:5066,0:-330.09,-42.7463,0,-330.09,-42.7463,-330.09	1/1:247:0,247,0:0:0:247,0:8841,0:-569.295,-74.3544,0,-569.295,-74.3544,-569.295	1/1:86:0,86,0:0:0:86,0:3088,0:-199.168,-25.8886,0,-199.168,-25.8886,-199.168	1/1:83:0,83,0:0:0:83,0:2984,0:-197.842,-24.9855,0,-197.842,-24.9855,-197.842	1/2:173:0,126,47:0:0:126,47:4512,1668:-373.665,-118.434,-80.5039,-255.53,0,-241.381	1/1:314:0,314,0:0:0:314,0:11242,0:-737.295,-94.5234,0,-737.295,-94.5234,-737.295	1/1:66:0,66,0:0:0:66,0:2372,0:-153.155,-19.868,0,-153.155,-19.868,-153.155	1/1:191:0,190,1:0:0:190,1:6771,36:-433.338,-57.1957,0,-430.89,-54.4422,-430.588	1/1:149:0,149,0:0:0:149,0:5340,0:-342.012,-44.8535,0,-342.012,-44.8535,-342.012	1/1:111:0,110,0:0:0:110,0:3938,0:-256.502,-33.1133,0,-256.502,-33.1133,-256.502	1/2:130:0,108,22:0:0:108,22:3872,784:-277.369,-56.3529,-23.8417,-221.323,0,-214.701	1/1:179:1,178,0:1:36:178,0:6388,0:-410.14,-50.2912,0,-410.441,-53.5833,-413.375	1/2:97:0,77,20:0:0:77,20:2764,720:-208.905,-51.4345,-28.2552,-157.776,0,-151.755	1/1:109:0,109,0:0:0:109,0:3900,0:-249.803,-32.8123,0,-249.803,-32.8123,-249.803	1/1:124:0,122,1:0:0:122,1:4376,29:-284.799,-36.7257,0,-282.597,-34.5543,-282.296	1/2:89:0,69,20:0:0:69,20:2476,712:-193.161,-51.0676,-30.2966,-142.397,0,-136.376	1/2:100:0,78,22:0:0:78,22:2792,780:-215.511,-55.9061,-32.4258,-159.908,0,-153.285	1/2:189:0,140,48:0:0:140,48:5008,1706:-406.51,-120.312,-78.168,-286.298,0,-271.849	1/2:149:0,119,30:0:0:119,30:4243,1080:-319.043,-77.2335,-41.4109,-242.116,0,-233.085	1/2:123:0,73,50:0:0:73,50:2620,1765:-275.026,-126.416,-104.441,-148.901,0,-133.849	1/1:157:0,157,0:0:0:157,0:5621,0:-359.371,-47.2617,0,-359.371,-47.2617,-359.371	1/1:174:0,165,9:0:0:165,9:5889,324:-382.735,-49.67,0,-359.981,-26.6045,-357.272	1/1:90:0,90,0:0:0:90,0:3228,0:-200.627,-27.0927,0,-200.627,-27.0927,-200.627	1/2:554:0,426,126:0:0:426,126:15228,4498:-1175.06,-320.929,-192.69,-854.153,0,-816.223	1/1:269:0,269,0:0:0:269,0:9607,0:-617.567,-80.9771,0,-617.567,-80.9771,-617.567	1/1:40:0,40,0:0:0:40,0:1432,0:-92.1699,-12.0412,0,-92.1699,-12.0412,-92.1699	1/1:350:1,349,0:1:36:349,0:12466,0:-799.399,-101.769,0,-799.7,-105.059,-802.632	1/1:208:0,208,0:0:0:208,0:7410,0:-474.993,-62.6142,0,-474.993,-62.6142,-474.993	1/1:175:0,175,0:0:0:175,0:6272,0:-406.731,-52.6803,0,-406.731,-52.6803,-406.731	1/1:11:0,11,0:0:0:11,0:381,0:-25.4039,-3.31133,0,-25.4039,-3.31133,-25.4039	1/1:23:0,23,0:0:0:23,0:824,0:-52.7477,-6.92369,0,-52.7477,-6.92369,-52.7477	1/2:6:0,4,2:0:0:4,2:140,72:-13.5334,-5.45443,-4.25031,-8.37777,0,-7.77571	1/1:18:0,18,0:0:0:18,0:640,0:-42.072,-5.41854,0,-42.072,-5.41854,-42.072	1/1:21:0,21,0:0:0:21,0:752,0:-49.2764,-6.32163,0,-49.2764,-6.32163,-49.2764	1/2:312:0,234,78:0:0:234,78:8389,2779:-668.523,-197.975,-127.534,-470.849,0,-447.368	1/1:312:0,312,0:0:0:312,0:11163,0:-726.673,-93.9214,0,-726.673,-93.9214,-726.673	1/2:166:0,133,33:0:0:133,33:4780,1168:-356.241,-83.9064,-43.8694,-272.639,0,-262.705	1/2:5:0,4,1:0:0:4,1:144,36:-11.0072,-2.88659,-1.68247,-8.42763,0,-8.1266	1/2:201:0,158,42:0:0:158,42:5654,1489:-425.832,-105.683,-58.1199,-320.117,0,-307.474	1/1:90:0,89,1:0:0:89,1:3192,36:-205.291,-26.7917,0,-202.722,-23.9051,-202.421	1/1:136:0,136,0:0:0:136,0:4884,0:-311.303,-40.9401,0,-311.303,-40.9401,-311.303	1/1:103:0,102,0:0:0:102,0:3672,0:-234.022,-30.7051,0,-234.022,-30.7051,-234.022	1/1:98:0,98,0:0:0:98,0:3524,0:-227.682,-29.5009,0,-227.682,-29.5009,-227.682	1/1:101:0,101,0:0:0:101,0:3615,0:-229.313,-30.404,0,-229.313,-30.404,-229.313	1/1:151:1,150,0:1:36:150,0:5366,0:-348.532,-41.8624,0,-348.833,-45.1545,-351.766	1/2:213:0,165,48:0:0:165,48:5924,1700:-453.193,-119.934,-70.2636,-333.558,0,-319.108	1/2:207:0,154,53:0:0:154,53:5528,1885:-446.106,-135.093,-88.7346,-311.314,0,-295.359	1/2:194:0,143,51:0:0:143,51:5128,1813:-416.334,-130.195,-87.1475,-286.439,0,-271.087	1/1:309:0,309,0:0:0:309,0:11045,0:-713.069,-93.0183,0,-713.069,-93.0183,-713.069	1/1:16:0,16,0:0:0:16,0:576,0:-36.8381,-4.81648,0,-36.8381,-4.81648,-36.8381	1/1:251:0,247,3:0:0:247,3:8845,108:-577.462,-74.3544,0,-569.877,-66.764,-568.974	1/1:73:0,73,0:0:0:73,0:2600,0:-166.902,-21.9752,0,-166.902,-21.9752,-166.902	1/1:32:0,32,0:0:0:32,0:1148,0:-75.3259,-9.63296,0,-75.3259,-9.63296,-75.3259	1/1:152:0,152,0:0:0:152,0:5430,0:-350.844,-45.7566,0,-350.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chr01	20586264	.	C	T	196386	PASS	AB=0.745847;ABP=1267.17;AC=160;AF=0.851064;AN=188;AO=8863;CIGAR=1X;DP=9500;DPB=9500;DPRA=0;EPP=19248.8;EPPR=1384.07;GTI=11;LEN=1;MEANALT=1.01064;MQM=54.3495;MQMR=41.9686;NS=94;NUMALT=1;ODDS=0.621172;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317440;QR=22800;RO=636;RPL=0;RPP=19248.8;RPPR=1384.07;RPR=8863;RUN=1;SAF=8863;SAP=19248.8;SAR=0;SRF=636;SRP=1384.07;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:99:0,99:0:0:99:3537:-318.185,-29.802,0	0/1:77:10,67:10:360:67:2397:-192.612,0,-8.77399	1/1:226:0,226:0:0:226:8116:-729.772,-68.0328,0	1/1:294:0,294:0:0:294:10502:-942.002,-88.5028,0	1/1:91:0,91:0:0:91:3272:-294.071,-27.3937,0	1/1:74:0,74:0:0:74:2656:-238.983,-22.2762,0	0/1:62:14,48:14:504:48:1705:-134.775,0,-25.1607	1/1:221:0,221:0:0:221:7909:-710.802,-66.5276,0	1/1:115:0,115:0:0:115:4085:-367.188,-34.6185,0	1/1:78:0,78:0:0:78:2789:-249.505,-23.4803,0	1/1:69:0,69:0:0:69:2476:-222.37,-20.7711,0	1/1:152:0,151:0:0:151:5424:-487.122,-45.4555,0	0/1:97:48,49:48:1716:49:1756:-128.882,0,-118.335	1/1:67:0,67:0:0:67:2396:-215.791,-20.169,0	0/1:71:32,39:32:1148:39:1400:-104.693,0,-78.813	1/1:82:1,81:1:36:81:2910:-258.076,-21.0862,0	1/1:50:0,50:0:0:50:1800:-162.103,-15.0515,0	0/1:29:12,17:12:432:17:612:-46.5406,0,-28.8304	0/1:27:5,22:5:176:22:792:-63.3413,0,-7.69881	0/1:132:13,119:13:468:119:4268:-343.689,0,-1.14534	0/1:147:32,115:32:1144:115:4128:-327.004,0,-55.1736	0/1:33:6,27:6:216:27:968:-77.2895,0,-9.51469	1/1:186:0,186:0:0:186:6673:-599.088,-55.9916,0	1/1:49:0,49:0:0:49:1752:-157.578,-14.7505,0	1/1:129:1,128:1:32:128:4589:-409.765,-35.6336,0	1/1:170:15,155:15:528:155:5552:-451.652,-4.47223,0	1/1:336:0,336:0:0:336:12045:-1082.45,-101.146,0	1/1:30:0,30:0:0:30:1080:-97.4235,-9.0309,0	1/1:271:0,271:0:0:271:9721:-871.752,-81.5791,0	1/1:169:0,169:0:0:169:6056:-543.402,-50.8741,0	1/1:192:0,192:0:0:192:6858:-615.963,-57.7978,0	1/1:9:0,9:0:0:9:324:-29.4925,-2.70927,0	1/1:26:0,26:0:0:26:928:-83.7981,-7.82678,0	1/1:1:0,1:0:0:1:36:-3.59656,-0.30103,0	1/1:10:0,10:0:0:10:360:-32.7287,-3.0103,0	1/1:18:0,18:0:0:18:648:-58.6253,-5.41854,0	0/1:167:72,95:72:2588:95:3405:-255.085,0,-177.871	1/1:104:1,103:1:36:103:3692:-328.529,-27.7088,0	0/1:32:15,17:15:540:17:608:-45.3845,0,-37.8618	1/1:6:0,6:0:0:6:216:-19.7818,-1.80618,0	0/1:119:24,95:24:864:95:3397:-269.743,0,-39.3135	1/1:41:0,41:0:0:41:1476:-132.98,-12.3422,0	1/1:141:0,141:0:0:141:5044:-453.273,-42.4452,0	1/1:81:0,81:0:0:81:2903:-260.524,-24.3834,0	1/1:93:1,92:1:36:92:3292:-292.281,-24.3975,0	1/1:152:0,152:0:0:152:5414:-485.316,-45.7566,0	1/1:199:0,199:0:0:199:7133:-641.28,-59.905,0	0/1:113:15,98:15:536:98:3503:-280.332,0,-12.7644	0/1:57:11,46:11:392:46:1632:-129.512,0,-17.0101	0/1:88:19,69:19:680:69:2472:-194.934,0,-33.4949	1/1:147:0,147:0:0:147:5257:-471.454,-44.2514,0	1/1:16:0,16:0:0:16:576:-52.0803,-4.81648,0	1/1:187:0,187:0:0:187:6700:-601.918,-56.2926,0	1/1:115:0,115:0:0:115:4124:-369.701,-34.6185,0	1/1:9:0,9:0:0:9:320:-29.1293,-2.70927,0	1/1:206:0,206:0:0:206:7383:-663.581,-62.0122,0	1/1:65:0,65:0:0:65:2321:-208.161,-19.567,0	1/1:14:0,14:0:0:14:504:-45.433,-4.21442,0	1/1:7:0,7:0:0:7:248:-22.6112,-2.10721,0	1/1:99:0,99:0:0:99:3544:-318.744,-29.802,0	1/1:114:1,113:1:36:113:4055:-360.091,-30.7191,0	1/1:15:0,15:0:0:15:532:-48.1342,-4.51545,0	1/1:181:0,181:0:0:181:6477:-579.583,-54.4864,0	1/1:204:0,204:0:0:204:7331:-658.087,-61.4101,0	1/1:82:0,82:0:0:82:2916:-262.235,-24.6845,0	1/1:130:2,128:2:72:128:4561:-402.621,-32.2972,0	1/1:170:0,170:0:0:170:6073:-545.086,-51.1751,0	1/1:229:0,229:0:0:229:8220:-737.586,-68.9359,0	1/1:56:0,56:0:0:56:2007:-180.651,-16.8577,0	1/1:87:0,87:0:0:87:3132:-281.267,-26.1896,0	1/1:38:1,37:1:36:37:1332:-116.143,-7.84087,0	1/1:27:0,27:0:0:27:957:-85.8323,-8.12781,0	0/1:73:10,63:10:360:63:2237:-179.185,0,-9.89937	0/1:61:11,50:11:396:50:1788:-142.758,0,-16.6642	0/1:181:27,154:27:968:154:5508:-440.298,0,-29.1976	1/1:130:0,130:0:0:130:4660:-418.596,-39.1339,0	0/1:68:8,60:8:284:60:2152:-173.303,0,-4.41937	1/1:106:0,106:0:0:106:3776:-339.62,-31.9092,0	1/1:9:0,9:0:0:9:320:-29.0437,-2.70927,0	0/1:53:14,39:14:504:39:1404:-110.466,0,-28.087	0/1:105:18,87:18:644:87:3112:-248.272,0,-24.7137	0/1:169:22,147:22:784:147:5276:-421.035,0,-17.6645	0/1:45:18,27:18:648:27:969:-72.8963,0,-43.504	0/1:77:38,39:38:1360:39:1400:-102.735,0,-95.5691	1/1:58:0,58:0:0:58:2084:-186.999,-17.4597,0	0/1:124:40,84:40:1440:84:3008:-233.006,0,-89.2185	0/1:27:14,13:14:500:13:468:-34.0561,0,-36.0578	1/1:96:0,96:0:0:96:3439:-307.816,-28.8989,0	1/1:68:0,68:0:0:68:2440:-219.632,-20.47,0	1/1:64:1,63:1:36:63:2251:-198.71,-15.6676,0	0/1:101:26,75:26:932:75:2700:-212.295,0,-50.5476	0/1:73:38,35:38:1368:35:1252:-90.1441,0,-95.5254	1/1:195:0,195:0:0:195:7004:-627.677,-58.7009,0	1/1:137:0,137:0:0:137:4915:-440.743,-41.2411,0
chr01	20586326	.	A	C	28211.2	PASS	AB=0.38272;ABP=405.39;AC=29;AF=0.155914;AN=186;AO=1291;CIGAR=1X;DP=10359;DPB=10359;DPRA=1.09918;EPP=435.369;EPPR=10507.3;GTI=0;LEN=1;MEANALT=1.06452;MQM=46.4539;MQMR=42.947;NS=93;NUMALT=1;ODDS=17.8597;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45703;QR=324187;RO=9054;RPL=990;RPP=801.495;RPPR=10501;RPR=301;RUN=1;SAF=598;SAP=18.1904;SAR=693;SRF=1;SRP=19654.8;SRR=9053;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:68:68,0:68:2431:0:0:0,-20.47,-211.034	0/1:170:144,26:144:5172:26:914:-30.4816,0,-394.732	0/0:187:185,0:185:6618:0:0:0,-55.6905,-569.316	0/0:284:284,0:284:10178:0:0:0,-85.4925,-897.366	0/0:86:86,0:86:3075:0:0:0,-25.8886,-268.154	0/0:84:84,0:84:3007:0:0:0,-25.2865,-257.919	0/1:138:99,39:99:3547:39:1387:-81.7342,0,-272.862	0/0:264:264,0:264:9438:0:0:0,-79.4719,-816.789	0/0:148:146,0:146:5229:0:0:0,-43.9504,-450.786	0/0:184:184,0:184:6583:0:0:0,-55.3895,-578.418	0/0:47:47,0:47:1673:0:0:0,-14.1484,-148.254	0/0:87:87,0:87:3100:0:0:0,-26.1896,-267.19	0/1:119:38,81:38:1364:81:2870:-215.285,0,-82.3672	0/0:70:70,0:70:2500:0:0:0,-21.0721,-217.948	0/1:100:39,61:39:1389:61:2158:-160.863,0,-92.3678	0/0:65:65,0:65:2327:0:0:0,-19.5669,-203.343	0/0:71:71,0:71:2556:0:0:0,-21.3731,-220.317	0/1:63:27,36:27:972:36:1279:-93.454,0,-63.7774	0/1:25:14,11:14:504:11:396:-28.0545,0,-36.0037	0/1:189:159,30:159:5712:30:1073:-37.7388,0,-446.218	0/1:151:86,65:86:3088:65:2302:-156.486,0,-225.474	0/1:51:40,11:40:1425:11:387:-19.5065,0,-112.08	0/0:139:139,0:139:4996:0:0:0,-41.8432,-440.578	0/0:168:167,1:167:5979:1:36:0,-46.9866,-517.907	0/0:124:124,0:124:4448:0:0:0,-37.3277,-390.944	0/1:169:123,45:123:4377:45:1595:-90.9891,0,-336.938	0/0:269:267,0:267:9592:0:0:0,-80.375,-832.362	0/0:41:41,0:41:1472:0:0:0,-12.3422,-127.746	0/0:225:225,0:225:8066:0:0:0,-67.7317,-715.332	0/0:137:136,0:136:4856:0:0:0,-40.9401,-424.046	0/0:145:145,0:145:5170:0:0:0,-43.6493,-455.509	0/0:17:17,0:17:608:0:0:0,-5.11751,-52.4391	0/0:18:18,0:18:644:0:0:0,-5.41854,-56.7977	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.74595	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.61332	0/0:19:19,0:19:676:0:0:0,-5.71957,-59.1823	0/1:286:138,148:138:4947:148:5218:-378.468,0,-352.778	0/0:153:153,0:153:5487:0:0:0,-46.0576,-478.775	0/1:65:36,29:36:1292:29:1020:-70.8402,0,-91.86	.:.:.:.:.:.:.:.	0/1:146:108,38:108:3880:38:1344:-73.0743,0,-294.992	0/0:34:34,0:34:1212:0:0:0,-10.235,-106.452	0/0:241:241,0:241:8640:0:0:0,-72.5482,-756.859	0/0:107:107,0:107:3843:0:0:0,-32.2102,-339.042	0/0:104:104,0:104:3735:0:0:0,-31.3071,-328.419	0/0:138:138,0:138:4938:0:0:0,-41.5421,-438.136	0/0:173:173,0:173:6216:0:0:0,-52.0782,-536.349	0/1:130:99,31:99:3517:31:1108:-58.7528,0,-270.702	0/1:118:93,25:93:3344:25:892:-43.7546,0,-259.647	0/1:102:72,30:72:2573:30:1044:-61.4153,0,-196.591	0/0:221:221,0:221:7902:0:0:0,-66.5276,-698.987	0/0:15:15,0:15:536:0:0:0,-4.51545,-46.7121	0/0:234:231,0:231:8263:0:0:0,-69.5379,-714.01	0/0:36:36,0:36:1296:0:0:0,-10.8371,-113.988	0/0:28:28,0:28:996:0:0:0,-8.42884,-85.4082	0/0:147:146,0:146:5248:0:0:0,-43.9504,-457.373	0/0:70:70,0:70:2495:0:0:0,-21.0721,-217.352	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.3751	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.6917	0/0:94:94,0:94:3352:0:0:0,-28.2968,-293.806	0/0:81:81,0:81:2912:0:0:0,-24.3834,-256.823	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.3413	0/0:193:193,0:193:6924:0:0:0,-58.0988,-615.48	0/0:281:281,0:281:10073:0:0:0,-84.5894,-886.984	0/0:105:105,0:105:3768:0:0:0,-31.6081,-330.838	0/0:77:76,0:76:2711:0:0:0,-22.8783,-239.076	0/0:181:181,0:181:6456:0:0:0,-54.4864,-567.58	0/0:133:133,0:133:4771:0:0:0,-40.037,-421.649	0/0:14:14,0:14:504:0:0:0,-4.21442,-44.7168	0/0:98:98,0:98:3504:0:0:0,-29.5009,-302.752	0/0:87:87,0:87:3089:0:0:0,-26.1896,-270.516	0/0:25:25,0:25:900:0:0:0,-7.52575,-79.5775	0/1:82:58,24:58:2067:24:860:-51.8527,0,-152.993	0/1:97:59,38:59:2112:38:1340:-89.8626,0,-153.952	0/1:146:100,46:100:3583:46:1627:-99.1303,0,-270.993	0/0:221:221,0:221:7897:0:0:0,-66.5276,-697.299	0/1:68:52,16:52:1872:16:568:-29.9799,0,-142.033	0/0:137:137,0:137:4909:0:0:0,-41.2411,-422.245	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.0585	0/1:117:83,34:83:2988:34:1193:-70.9197,0,-226.741	0/1:95:65,29:65:2332:29:1036:-63.4828,0,-173.116	0/1:156:115,41:115:4132:41:1432:-78.4153,0,-315.367	0/1:85:39,46:39:1404:46:1634:-119.595,0,-97.8286	0/1:105:31,74:31:1107:74:2635:-201.7,0,-66.0558	0/0:120:120,0:120:4278:0:0:0,-36.1236,-378.127	0/1:172:82,90:82:2885:90:3184:-231.246,0,-201.481	0/1:44:14,30:14:504:30:1062:-81.2726,0,-30.6937	0/0:87:87,0:87:3119:0:0:0,-26.1896,-269.248	0/0:88:88,0:88:3126:0:0:0,-26.4906,-268.119	0/0:26:26,0:26:936:0:0:0,-7.82678,-82.4763	0/1:85:36,49:36:1296:49:1748:-128.608,0,-88.0575	0/1:94:28,66:28:995:66:2329:-176.477,0,-59.8163	0/0:114:114,0:114:4092:0:0:0,-34.3174,-360.163	0/0:138:137,1:137:4909:1:32:0,-38.8875,-429.657
chr01	20586334	.	AC	AGA,AG	207399	PASS	AB=0.747245,0.250978;ABP=1496.63,1518.18;AC=157,29;AF=0.844086,0.155914;AN=186;AO=9153,707;CIGAR=1M1I1X,1M1X;DP=9877;DPB=14461.5;DPRA=0,0.908223;EPP=19878.5,1529.57;EPPR=0;GTI=10;LEN=3,1;MEANALT=1.47312,2.16667;MQM=42.9251,51.0028;MQMR=0;NS=93;NUMALT=2;ODDS=1613.44;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=322866,25280;QR=0;RO=0;RPL=9153,706;RPP=19878.5,1529.57;RPPR=0;RPR=0,1;RUN=1,1;SAF=0,0;SAP=19878.5,1538.24;SAR=9153,707;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:69:0,69,0:0:0:69,0:2392,0:-208.394,-20.7711,0,-208.394,-20.7711,-208.394	1/2:167:0,147,20:0:0:147,20:5185,712:-461.691,-58.0113,-13.7599,-404.032,0,-398.011	1/1:192:0,191,0:0:0:191,0:6775,0:-582.103,-57.4967,0,-582.103,-57.4967,-582.103	1/1:288:0,287,0:0:0:287,0:10157,0:-896.422,-86.3956,0,-896.422,-86.3956,-896.422	1/1:87:0,87,0:0:0:87,0:3086,0:-269.766,-26.1896,0,-269.766,-26.1896,-269.766	1/1:84:0,84,0:0:0:84,0:2965,0:-255.452,-25.2865,0,-255.452,-25.2865,-255.452	1/2:130:0,101,29:0:0:101,29:3584,1036:-370.922,-84.3487,-53.9447,-286.927,0,-278.197	1/1:268:0,268,0:0:0:268,0:9459,0:-820.023,-80.676,0,-820.023,-80.676,-820.023	1/1:150:0,150,0:0:0:150,0:5295,0:-456.944,-45.1545,0,-456.944,-45.1545,-456.944	1/1:187:0,187,0:0:0:187,0:6518,0:-574.375,-56.2926,0,-574.375,-56.2926,-574.375	1/1:47:0,47,0:0:0:47,0:1653,0:-146.591,-14.1484,0,-146.591,-14.1484,-146.591	1/1:88:0,88,0:0:0:88,0:3123,0:-268.527,-26.4906,0,-268.527,-26.4906,-268.527	1/2:75:0,38,37:0:0:38,37:1357,1324:-213.603,-107.672,-96.2327,-106.281,0,-95.1426	1/1:70:0,69,0:0:0:69,0:2429,0:-211.995,-20.7711,0,-211.995,-20.7711,-211.995	1/2:73:0,40,33:0:0:40,33:1418,1184:-208.986,-96.425,-84.3838,-112.913,0,-102.979	1/1:66:0,66,0:0:0:66,0:2351,0:-205.923,-19.868,0,-205.923,-19.868,-205.923	1/1:73:0,73,0:0:0:73,0:2598,0:-223.479,-21.9752,0,-223.479,-21.9752,-223.479	1/2:50:0,27,23:0:0:27,23:946,828:-139.65,-66.4891,-58.3613,-73.5057,0,-66.582	1/2:22:0,14,8:0:0:14,8:504,288:-62.6794,-23.7168,-19.5023,-39.315,0,-36.9068	1/2:175:0,158,17:0:0:158,17:5599,608:-496.588,-49.275,-1.71222,-447.666,0,-442.548	1/2:122:0,88,33:0:0:88,33:3090,1184:-340.071,-95.4757,-68.9851,-244.611,0,-234.677	1/2:46:0,41,5:0:0:41,5:1459,180:-132.822,-15.0299,-2.68763,-118.151,0,-116.646	1/1:142:0,142,0:0:0:142,0:4971,0:-439.622,-42.7463,0,-439.622,-42.7463,-439.622	1/1:169:0,167,1:0:0:167,1:5926,36:-517.056,-50.272,0,-514.129,-47.3419,-513.828	1/1:126:0,126,0:0:0:126,0:4494,0:-395.342,-37.9298,0,-395.342,-37.9298,-395.342	1/2:158:0,123,34:0:0:123,34:4334,1224:-445.902,-98.9067,-61.88,-346.998,0,-336.763	1/1:272:0,272,0:0:0:272,0:9599,0:-835.665,-81.8802,0,-835.665,-81.8802,-835.665	1/1:41:0,41,0:0:0:41,0:1430,0:-124.491,-12.3422,0,-124.491,-12.3422,-124.491	1/1:226:0,226,0:0:0:226,0:8001,0:-711.027,-68.0328,0,-711.027,-68.0328,-711.027	1/1:136:0,133,0:0:0:133,0:4720,0:-412.01,-40.037,0,-412.01,-40.037,-412.01	1/1:148:0,148,0:0:0:148,0:5197,0:-458.064,-44.5524,0,-458.064,-44.5524,-458.064	1/1:16:0,16,0:0:0:16,0:572,0:-49.6214,-4.81648,0,-49.6214,-4.81648,-49.6214	1/1:18:0,18,0:0:0:18,0:644,0:-56.806,-5.41854,0,-56.806,-5.41854,-56.806	1/1:3:0,3,0:0:0:3,0:108,0:-9.74595,-0.90309,0,-9.74595,-0.90309,-9.74595	1/1:2:0,2,0:0:0:2,0:72,0:-6.61332,-0.60206,0,-6.61332,-0.60206,-6.61332	1/1:19:0,19,0:0:0:19,0:669,0:-58.5971,-5.71957,0,-58.5971,-5.71957,-58.5971	1/2:221:0,140,81:0:0:140,81:4954,2900:-632.354,-235.519,-193.374,-397.188,0,-372.805	1/1:156:0,155,0:0:0:155,0:5427,0:-475.235,-46.6597,0,-475.235,-46.6597,-475.235	1/2:50:0,36,14:0:0:36,14:1255,504:-138.361,-40.9342,-30.0971,-97.7764,0,-93.562	.:.:.:.:.:.:.:.	1/2:124:0,108,16:0:0:108,16:3805,559:-344.996,-44.5308,-12.0196,-300.806,0,-295.989	1/1:34:0,34,0:0:0:34,0:1217,0:-106.854,-10.235,0,-106.854,-10.235,-106.854	1/1:243:0,243,0:0:0:243,0:8590,0:-753.798,-73.1503,0,-753.798,-73.1503,-753.798	1/1:108:0,108,0:0:0:108,0:3838,0:-338.794,-32.5112,0,-338.794,-32.5112,-338.794	1/1:106:0,106,0:0:0:106,0:3782,0:-332.72,-31.9092,0,-332.72,-31.9092,-332.72	1/1:139:0,139,0:0:0:139,0:4882,0:-434.645,-41.8432,0,-434.645,-41.8432,-434.645	1/1:172:0,172,0:0:0:172,0:6073,0:-525.619,-51.7772,0,-525.619,-51.7772,-525.619	1/2:116:0,101,15:0:0:101,15:3508,536:-322.99,-43.8133,-13.4092,-279.53,0,-275.014	1/2:109:0,95,14:0:0:95,14:3318,496:-305.683,-40.6784,-12.0806,-265.356,0,-261.142	1/2:84:0,69,12:0:0:69,12:2450,428:-229.789,-34.7592,-13.9882,-195.054,0,-191.441	1/1:222:0,222,0:0:0:222,0:7856,0:-696.5,-66.8287,0,-696.5,-66.8287,-696.5	1/1:15:0,15,0:0:0:15,0:522,0:-46.0943,-4.51545,0,-46.0943,-4.51545,-46.0943	1/1:236:0,235,0:0:0:235,0:8266,0:-714.077,-70.7421,0,-714.077,-70.7421,-714.077	1/1:37:0,37,0:0:0:37,0:1321,0:-116.232,-11.1381,0,-116.232,-11.1381,-116.232	1/1:29:0,29,0:0:0:29,0:987,0:-85.8569,-8.72987,0,-85.8569,-8.72987,-85.8569	1/1:149:0,149,0:0:0:149,0:5307,0:-462.598,-44.8535,0,-462.598,-44.8535,-462.598	1/1:71:0,71,0:0:0:71,0:2491,0:-217.392,-21.3731,0,-217.392,-21.3731,-217.392	1/1:18:0,18,0:0:0:18,0:622,0:-55.2648,-5.41854,0,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chr01	20803565	.	T	C	167703	PASS	AB=0.508015;ABP=4.92482;AC=156;AF=0.829787;AN=188;AO=7710;CIGAR=1X;DP=9420;DPB=9420;DPRA=101.28;EPP=16745.1;EPPR=3685.85;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.989;MQMR=59.9865;NS=94;NUMALT=1;ODDS=0.470177;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275994;QR=61119;RO=1704;RPL=0;RPP=16745.1;RPPR=3685.85;RPR=7710;RUN=1;SAF=7710;SAP=16745.1;SAR=0;SRF=1704;SRP=3703.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:118:0,118:0:0:118:4224:-380.34,-35.5215,0	0/1:111:54,57:54:1940:57:2048:-151.177,0,-141.462	1/1:186:1,185:1:36:185:6608:-591.201,-52.3933,0	1/1:175:0,175:0:0:175:6259:-563.404,-52.6803,0	1/1:74:0,74:0:0:74:2634:-237.306,-22.2762,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	0/1:84:40,44:40:1440:44:1580:-117.205,0,-104.611	1/1:112:0,112:0:0:112:4003:-360.459,-33.7154,0	1/1:206:0,206:0:0:206:7359:-662.36,-62.0122,0	1/1:104:0,103:0:0:103:3688:-331.762,-31.0061,0	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	1/1:156:0,156:0:0:156:5565:-500.965,-46.9607,0	0/1:113:60,53:60:2152:53:1887:-136.091,0,-159.931	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	0/1:85:44,41:44:1584:41:1468:-106.829,0,-117.264	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:35:17,18:17:612:18:648:-48.1158,0,-44.8774	0/1:38:20,18:20:720:18:648:-47.2127,0,-53.6896	0/1:156:72,84:72:2565:84:2993:-222.641,0,-184.138	0/1:216:96,120:96:3444:120:4296:-321.766,0,-245.15	0/1:83:50,33:50:1792:33:1188:-82.2431,0,-136.577	1/1:119:0,119:0:0:119:4272:-384.657,-35.8226,0	1/1:139:2,137:2:72:137:4916:-435.753,-35.0064,0	1/1:120:0,120:0:0:120:4295:-386.727,-36.1236,0	0/1:232:121,111:121:4329:111:3980:-288.551,0,-319.945	1/1:385:0,385:0:0:385:13789:-1240.79,-115.897,0	1/1:50:0,50:0:0:50:1791:-161.472,-15.0515,0	1/1:306:0,305:0:0:305:10925:-982.785,-91.8142,0	1/1:89:0,89:0:0:89:3188:-287.144,-26.7917,0	1/1:98:0,98:0:0:98:3492:-314.49,-29.5009,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:18:1,17:1:36:17:604:-51.0923,-1.82027,0	0/1:258:115,143:115:4136:143:5123:-383.545,0,-294.756	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	0/1:67:25,42:25:900:42:1512:-116.206,0,-61.152	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:84:32,52:32:1152:52:1861:-142.482,0,-78.7036	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:208:1,207:1:36:207:7407:-663.078,-59.0164,0	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:78:0,78:0:0:78:2765:-249.035,-23.4803,0	1/1:94:0,94:0:0:94:3384:-304.774,-28.2968,0	0/1:104:52,52:52:1868:52:1859:-136.282,0,-137.092	0/1:113:54,59:54:1936:59:2101:-155.341,0,-140.5	0/1:93:49,44:49:1764:44:1571:-113.685,0,-131.048	1/1:149:0,149:0:0:149:5320:-478.936,-44.8535,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:113:0,113:0:0:113:4040:-363.788,-34.0164,0	1/1:65:1,64:1:32:64:2288:-202.982,-16.3676,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:117:0,117:0:0:117:4174:-375.843,-35.2205,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:117:0,117:0:0:117:4183:-376.652,-35.2205,0	1/1:122:0,121:0:0:121:4344:-390.774,-36.4246,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:120:0,120:0:0:120:4312:-388.255,-36.1236,0	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	1/1:69:1,68:1:36:68:2444:-216.616,-17.1728,0	1/1:81:0,81:0:0:81:2879:-259.347,-24.3834,0	1/1:193:3,190:3:108:190:6820:-603.793,-48.0236,0	1/1:141:3,136:3:108:136:4874:-428.575,-32.0829,0	1/1:68:1,67:1:36:67:2404:-213.018,-16.8718,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	1/1:89:0,89:0:0:89:3190:-287.323,-26.7917,0	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	0/1:135:69,66:69:2484:66:2376:-173.458,0,-183.174	0/1:87:48,39:48:1728:39:1395:-99.6587,0,-129.616	0/1:204:107,97:107:3836:97:3463:-250.472,0,-284.026	1/1:93:0,93:0:0:93:3333:-300.186,-27.9958,0	0/1:144:82,62:82:2932:62:2216:-156.356,0,-220.577	1/1:100:0,99:0:0:99:3548:-319.168,-29.802,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:72:37,35:37:1328:35:1256:-91.6711,0,-98.1481	0/1:105:50,55:50:1773:55:1976:-146.503,0,-128.243	0/1:225:101,124:101:3624:124:4438:-331.859,0,-258.633	0/1:88:47,41:47:1692:41:1459:-105.115,0,-126.076	0/1:91:47,44:47:1688:44:1580:-115.098,0,-124.813	1/1:77:0,77:0:0:77:2759:-248.551,-23.1793,0	0/1:178:80,98:80:2868:98:3520:-263.425,0,-204.774	0/1:15:5,10:5:180:10:347:-27.0482,0,-12.0366	1/1:81:1,80:1:32:80:2855:-253.988,-21.1841,0	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:126:57,69:57:2040:69:2459:-183.634,0,-145.942	0/1:86:55,31:55:1972:31:1099:-73.3309,0,-151.866	1/1:154:0,154:0:0:154:5469:-492.339,-46.3586,0	1/1:146:0,146:0:0:146:5247:-472.364,-43.9504,0
chr01	20862864	.	CACG	AACG	147619	PASS	AB=0.51898;ABP=13.3137;AC=155;AF=0.824468;AN=188;AO=6914;CIGAR=1X3M;DP=8524;DPB=8524;DPRA=0;EPP=15016.6;EPPR=3420.91;GTI=0;LEN=1;MEANALT=1.31915;MQM=59.9236;MQMR=59.974;NS=94;NUMALT=1;ODDS=1.43663;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245052;QR=55368;RO=1574;RPL=0;RPP=15016.6;RPPR=3420.91;RPR=6914;RUN=1;SAF=6914;SAP=15016.6;SAR=0;SRF=1574;SRP=3420.91;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:112:0,112:0:0:112:3993:-359.129,-33.7154,0	0/1:110:66,43:66:2349:43:1533:-105.167,0,-178.576	1/1:167:1,166:1:24:166:5813:-520.613,-47.8721,0	1/1:194:0,194:0:0:194:6918:-622.687,-58.3998,0	1/1:59:0,59:0:0:59:2104:-189.358,-17.7608,0	1/1:55:2,53:2:72:53:1877:-162.37,-9.71993,0	0/1:131:70,61:70:2481:61:2176:-156.672,0,-184.109	1/1:137:0,135:0:0:135:4810:-432.709,-40.6391,0	1/1:168:0,168:0:0:168:5970:-537.408,-50.573,0	1/1:89:0,89:0:0:89:3150:-283.724,-26.7917,0	1/1:33:0,33:0:0:33:1165:-105.155,-9.93399,0	1/1:102:0,101:0:0:101:3597:-323.616,-30.404,0	0/1:116:72,43:72:2565:43:1540:-103.915,0,-196.122	1/1:54:0,54:0:0:54:1913:-172.445,-16.2556,0	0/1:78:31,47:31:1099:47:1692:-129.087,0,-75.7398	1/1:66:0,66:0:0:66:2341:-210.944,-19.868,0	1/1:45:0,45:0:0:45:1597:-144.018,-13.5464,0	0/1:40:17,22:17:610:22:776:-58.0625,0,-43.1329	0/1:22:10,12:10:356:12:428:-32.2361,0,-25.7589	0/1:171:84,87:84:2949:87:3116:-229.183,0,-214.168	0/1:177:77,99:77:2719:99:3503:-262.137,0,-191.585	0/1:81:44,36:44:1527:36:1281:-91.1492,0,-113.279	1/1:130:1,128:1:36:128:4525:-403.792,-35.5944,0	1/1:99:0,97:0:0:97:3399:-305.766,-29.1999,0	1/1:78:0,77:0:0:77:2723:-244.951,-23.1793,0	0/1:252:119,133:119:4193:133:4730:-349.999,0,-301.696	1/1:209:0,208:0:0:208:7359:-661.954,-62.6142,0	1/1:35:0,35:0:0:35:1248:-112.624,-10.5361,0	1/1:204:1,203:1:35:203:7206:-645.097,-57.9115,0	1/1:125:0,125:0:0:125:4419:-397.611,-37.6288,0	1/1:120:0,120:0:0:120:4293:-386.546,-36.1236,0	1/1:6:0,6:0:0:6:201:-18.4124,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:6,5:6:213:5:172:-12.5066,0,-16.2052	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:202:100,102:100:3531:102:3617:-264.924,0,-257.194	1/1:81:0,81:0:0:81:2874:-258.895,-24.3834,0	0/1:41:24,17:24:813:17:612:-43.0712,0,-61.1374	0/1:5:3,2:3:107:2:72:-5.33157,0,-8.47702	0/1:104:45,58:45:1594:58:2035:-152.044,0,-112.384	1/1:23:0,22:0:0:22:777:-69.9959,-6.62266,0	1/1:158:0,155:0:0:155:5442:-489.557,-46.6597,0	1/1:61:0,61:0:0:61:2173:-195.671,-18.3628,0	1/1:78:0,77:0:0:77:2711:-243.89,-23.1793,0	1/1:126:0,126:0:0:126:4474:-402.782,-37.9298,0	1/1:115:0,115:0:0:115:4038:-363.608,-34.6185,0	0/1:174:78,96:78:2757:96:3376:-251.672,0,-195.994	0/1:101:57,44:57:2015:44:1565:-110.736,0,-151.219	0/1:87:45,42:45:1582:42:1478:-107.121,0,-116.479	1/1:91:0,91:0:0:91:3248:-292.54,-27.3937,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:123:1,122:1:25:122:4296:-384.327,-34.5402,0	1/1:67:0,67:0:0:67:2354:-212.115,-20.169,0	1/1:14:0,14:0:0:14:489:-44.3389,-4.21442,0	1/1:133:0,133:0:0:133:4730:-425.859,-40.037,0	1/1:69:0,69:0:0:69:2420:-218.05,-20.7711,0	0/1:8:1,7:1:36:7:237:-19.2508,0,-1.19003	0/1:12:7,5:7:251:5:180:-12.9397,0,-19.3255	1/1:107:0,107:0:0:107:3762:-338.774,-32.2102,0	1/1:83:0,83:0:0:83:2964:-266.988,-24.9855,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:121:0,121:0:0:121:4305:-387.591,-36.4246,0	1/1:160:2,158:2:72:158:5615:-498.628,-41.3281,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:89:0,89:0:0:89:3176:-286.063,-26.7917,0	1/1:148:0,148:0:0:148:5244:-472.085,-44.5524,0	1/1:128:0,128:0:0:128:4513:-406.331,-38.5318,0	1/1:17:0,17:0:0:17:597:-54.0557,-5.11751,0	1/1:68:0,68:0:0:68:2428:-218.776,-20.47,0	1/1:56:0,56:0:0:56:2000:-180.272,-16.8577,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:96:42,53:42:1469:53:1862:-138.898,0,-103.546	0/1:125:54,67:54:1868:67:2374:-177.149,0,-131.63	0/1:142:64,78:64:2269:78:2750:-204.99,0,-161.725	1/1:74:0,74:0:0:74:2611:-235.164,-22.2762,0	0/1:138:57,81:57:1976:81:2791:-209.872,0,-136.572	1/1:93:0,93:0:0:93:3291:-296.249,-27.9958,0	1/1:11:0,10:0:0:10:356:-32.0218,-3.0103,0	0/1:57:23,30:23:807:30:1048:-78.313,0,-56.636	0/1:138:44,94:44:1515:94:3337:-259.005,0,-95.0954	0/1:227:99,127:99:3488:127:4518:-338.543,0,-245.891	0/1:61:33,27:33:1170:27:968:-69.0158,0,-87.1854	0/1:86:34,52:34:1182:52:1864:-142.151,0,-80.7943	1/1:65:0,65:0:0:65:2279:-205.368,-19.567,0	0/1:142:65,77:65:2288:77:2753:-205.264,0,-163.435	0/1:29:16,12:16:549:12:432:-30.4325,0,-40.9451	1/1:79:1,77:1:36:77:2733:-242.645,-20.2103,0	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	1/1:20:0,20:0:0:20:712:-64.3941,-6.0206,0	0/1:56:28,27:28:984:27:968:-70.6461,0,-72.0816	0/1:73:50,23:50:1756:23:805:-50.7923,0,-136.347	1/1:145:0,145:0:0:145:5173:-465.701,-43.6494,0	1/1:160:0,158:0:0:158:5565:-500.652,-47.5627,0
chr01	20862891	.	AAAG	CAAA,AAAA	500447	PASS	AB=0.536727,0.4624;ABP=83.5601,87.4337;AC=156,32;AF=0.829787,0.170213;AN=188;AO=15501,3222;CIGAR=1X2M1X,3M1X;DP=18752;DPB=18801.5;DPRA=0,1.36948;EPP=33515.5,6921.54;EPPR=0;GTI=0;LEN=4,1;MEANALT=1.87234,2.23214;MQM=48.7677,59.5531;MQMR=0;NS=94;NUMALT=2;ODDS=12.8684;PAIRED=0,0;PAIREDR=0;PAO=76.5,76.5;PQA=2320,2320;PQR=0;PRO=0;QA=541100,114901;QR=0;RO=0;RPL=7116,1565;RPP=228.599,8.71463;RPPR=0;RPR=8385,1657;RUN=1,1;SAF=7133,1574;SAP=216.673,6.70086;SAR=8368,1648;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:186:0,186,0:0:0:186,0:6525,0:-578.471,-55.9916,0,-578.471,-55.9916,-578.471	1/2:201:0,102,99:0:0:102,99:3586,3537:-575.122,-288.732,-258.027,-286.742,0,-256.94	1/1:361:0,361,0:0:0:361,0:12593,0:-1112.79,-108.672,0,-1112.79,-108.672,-1112.79	1/1:479:0,477,2:0:0:477,2:16548,57:-1442.39,-143.591,0,-1437.87,-138.88,-1437.27	1/1:136:0,134,1:0:0:134,1:4718,36:-410.981,-40.338,0,-408.044,-37.4608,-407.743	1/1:98:0,96,2:0:0:96,2:3396,72:-301.553,-28.8989,0,-295.678,-22.7244,-295.076	1/2:219:0,107,112:0:0:107,112:3768,4016:-628.017,-327.708,-295.498,-300.482,0,-266.767	1/1:354:0,353,1:0:0:353,1:12397,36:-1090.12,-106.264,0,-1087.18,-102.966,-1086.88	1/1:292:0,290,2:0:0:290,2:10135,68:-897.489,-87.2987,0,-892.009,-81.571,-891.407	1/1:211:0,210,1:0:0:210,1:7314,21:-641.771,-63.2163,0,-640.183,-61.4174,-639.882	1/1:103:0,103,0:0:0:103,0:3566,0:-308.887,-31.0061,0,-308.887,-31.0061,-308.887	1/1:185:0,184,0:0:0:184,0:6456,0:-571.434,-55.3895,0,-571.434,-55.3895,-571.434	1/2:193:0,89,104:0:0:89,104:3137,3736:-555.529,-305.13,-278.338,-250.751,0,-219.444	1/1:153:0,153,0:0:0:153,0:5375,0:-470.999,-46.0576,0,-470.999,-46.0576,-470.999	1/2:166:0,94,72:0:0:94,72:3284,2576:-471.318,-210.25,-181.953,-261.301,0,-239.627	1/1:129:0,127,1:0:0:127,1:4442,36:-390.422,-38.2308,0,-387.507,-35.4373,-387.206	1/1:108:0,108,0:0:0:108,0:3793,0:-335.756,-32.5112,0,-335.756,-32.5112,-335.756	1/2:79:0,43,36:0:0:43,36:1509,1296:-226.885,-105.808,-92.8633,-121.431,0,-110.594	1/2:57:0,25,32:0:0:25,32:872,1126:-161.701,-91.8657,-84.34,-70.1258,0,-60.4928	1/2:294:0,168,126:0:0:168,126:5915,4486:-835.557,-365.664,-315.091,-469.946,0,-432.016	1/2:366:0,205,159:0:0:205,159:7147,5669:-1031.8,-462.019,-400.308,-569.832,0,-521.969	1/2:172:0,69,103:0:0:69,103:2413,3664:-489.428,-298.781,-278.01,-190.994,0,-159.988	1/1:319:0,318,1:0:0:318,1:11055,36:-964.001,-95.7275,0,-961.064,-92.4303,-960.763	1/1:169:0,164,3:0:0:164,3:5761,108:-510.508,-49.3689,0,-501.695,-40.5376,-500.792	1/1:169:0,169,0:0:0:169,0:5912,0:-521.167,-50.8741,0,-521.167,-50.8741,-521.167	1/2:580:0,313,266:0:0:313,266:10857,9502:-1628.47,-774.448,-680.226,-853.83,0,-773.756	1/1:455:0,454,0:0:0:454,0:15822,0:-1396.48,-136.668,0,-1396.48,-136.668,-1396.48	1/1:58:0,58,0:0:0:58,0:2009,0:-177.914,-17.4597,0,-177.914,-17.4597,-177.914	1/1:514:0,512,2:0:0:512,2:17777,68:-1550.08,-154.127,0,-1544.57,-148.434,-1543.97	1/1:274:0,274,0:0:0:274,0:9631,0:-847.792,-82.4822,0,-847.792,-82.4822,-847.792	1/1:262:0,261,1:0:0:261,1:9044,36:-795.427,-78.5688,0,-792.518,-75.303,-792.217	1/1:14:0,14,0:0:0:14,0:487,0:-43.499,-4.21442,0,-43.499,-4.21442,-43.499	1/1:30:0,30,0:0:0:30,0:1041,0:-90.8492,-9.0309,0,-90.8492,-9.0309,-90.8492	1/2:18:0,11,7:0:0:11,7:386,237:-50.4869,-19.5518,-16.2405,-31.2763,0,-29.1691	1/1:17:0,17,0:0:0:17,0:592,0:-50.6376,-5.11751,0,-50.6376,-5.11751,-50.6376	1/1:19:0,19,0:0:0:19,0:652,0:-57.9718,-5.71957,0,-57.9718,-5.71957,-57.9718	1/2:339:0,170,169:0:0:170,169:5956,6042:-968.29,-492.979,-441.804,-475.662,0,-424.788	1/1:168:0,164,3:0:0:164,3:5641,96:-498.367,-49.3689,0,-491.521,-42.6668,-490.618	1/2:80:0,44,36:0:0:44,36:1521,1292:-223.452,-105.648,-92.4025,-118.093,0,-107.256	1/2:11:0,6,4:0:0:6,4:215,144:-28.9001,-11.8516,-10.0454,-17.1404,0,-15.9363	1/2:276:0,150,126:0:0:150,126:5257,4500:-783.002,-366.971,-321.817,-416.143,0,-378.213	1/1:54:0,54,0:0:0:54,0:1894,0:-167.114,-16.2556,0,-167.114,-16.2556,-167.114	1/1:336:0,333,0:0:0:333,0:11572,0:-1021.26,-100.243,0,-1021.26,-100.243,-1021.26	1/1:128:0,128,0:0:0:128,0:4497,0:-395.795,-38.5318,0,-395.795,-38.5318,-395.795	1/1:126:0,126,0:0:0:126,0:4450,0:-394.389,-37.9298,0,-394.389,-37.9298,-394.389	1/1:236:0,235,0:0:0:235,0:8209,0:-722.663,-70.7421,0,-722.663,-70.7421,-722.663	1/1:244:0,242,0:0:0:242,0:8449,0:-748.13,-72.8493,0,-748.13,-72.8493,-748.13	1/2:362:0,194,168:0:0:194,168:6773,6007:-1025.84,-489.725,-431.326,-536.468,0,-485.895	1/2:194:0,99,95:0:0:99,95:3478,3408:-554.118,-278.3,-248.498,-276.169,0,-247.571	1/2:248:0,116,132:0:0:116,132:4026,4684:-699.242,-381.76,-346.841,-317.648,0,-277.912	1/1:198:0,198,0:0:0:198,0:6933,0:-609.405,-59.6039,0,-609.405,-59.6039,-609.405	1/1:12:0,12,0:0:0:12,0:424,0:-36.9895,-3.61236,0,-36.9895,-3.61236,-36.9895	1/1:301:0,301,0:0:0:301,0:10508,0:-927.781,-90.61,0,-927.781,-90.61,-927.781	1/1:207:0,205,1:0:0:205,1:7147,36:-623.387,-61.7112,0,-620.607,-58.9397,-620.306	1/1:29:0,29,0:0:0:29,0:993,0:-88.5082,-8.72987,0,-88.5082,-8.72987,-88.5082	1/1:345:0,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chr01	20862930	.	C	G	173647	PASS	AB=0.543115;ABP=61.9931;AC=156;AF=0.829787;AN=188;AO=8614;CIGAR=1X;DP=10304;DPB=10304;DPRA=0;EPP=18699.4;EPPR=3651.08;GTI=1;LEN=1;MEANALT=1.06383;MQM=39.3593;MQMR=59.1821;NS=94;NUMALT=1;ODDS=4.18805;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=307247;QR=60143;RO=1680;RPL=8614;RPP=18708.1;RPPR=3651.08;RPR=0;RUN=1;SAF=1;SAP=18699.4;SAR=8613;SRF=0;SRP=3651.08;SRR=1680;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:70:0,70:0:0:70:2504:-215.339,-21.0721,0	0/1:93:34,59:34:1216:59:2120:-156.268,0,-81.7407	1/1:191:0,190:0:0:190:6749:-583.475,-57.1957,0	1/1:296:0,296:0:0:296:10558:-891.761,-89.1049,0	1/1:75:0,75:0:0:75:2668:-226.206,-22.5773,0	1/1:45:0,45:0:0:45:1608:-140.482,-13.5464,0	0/1:90:42,48:42:1508:48:1715:-119.598,0,-108.897	1/1:220:0,220:0:0:220:7842:-676.77,-66.2266,0	1/1:125:0,125:0:0:125:4450:-383.967,-37.6288,0	1/1:124:0,124:0:0:124:4402:-376.413,-37.3277,0	1/1:71:0,71:0:0:71:2528:-214.483,-21.3731,0	1/1:82:0,82:0:0:82:2919:-251.64,-24.6845,0	0/1:80:32,48:32:1148:48:1701:-123.229,0,-79.5449	1/1:100:0,100:0:0:100:3568:-306.858,-30.103,0	0/1:86:41,45:41:1476:45:1604:-111.304,0,-107.192	1/1:68:0,68:0:0:68:2432:-208.409,-20.47,0	1/1:65:0,65:0:0:65:2323:-202.809,-19.567,0	0/1:42:21,21:21:740:21:744:-52.4686,0,-54.1009	0/1:36:23,13:23:828:13:454:-29.0261,0,-63.9173	0/1:118:40,78:40:1419:78:2788:-202.885,0,-92.4646	0/1:191:82,109:82:2911:109:3870:-276.287,0,-203.444	0/1:93:59,34:59:2108:34:1211:-74.6336,0,-161.965	1/1:193:1,192:1:21:192:6829:-577.131,-55.9993,0	1/1:70:5,65:5:180:65:2327:-184.727,-4.84398,0	1/1:91:0,91:0:0:91:3260:-280.955,-27.3937,0	0/1:332:155,177:155:5560:177:6287:-432.974,0,-400.193	1/1:248:0,243:0:0:243:8704:-749.396,-73.1503,0	1/1:21:1,20:1:36:20:716:-57.4072,-2.72846,0	1/1:312:0,312:0:0:312:11156:-944.563,-93.9214,0	1/1:148:0,148:0:0:148:5300:-455.878,-44.5524,0	1/1:139:0,139:0:0:139:4957:-422.802,-41.8432,0	1/1:6:0,6:0:0:6:216:-19.0237,-1.80618,0	1/1:24:0,24:0:0:24:864:-74.398,-7.22472,0	0/1:8:1,7:1:36:7:252:-19.9302,0,-1.19003	1/1:9:0,9:0:0:9:320:-26.2041,-2.70927,0	1/1:12:0,12:0:0:12:432:-37.9396,-3.61236,0	0/1:135:70,65:70:2512:65:2323:-157.706,0,-185.663	1/1:90:0,90:0:0:90:3173:-272.78,-27.0927,0	0/1:39:13,26:13:468:26:918:-65.5556,0,-30.6835	0/1:7:3,4:3:108:4:144:-10.6744,0,-7.16336	0/1:175:84,91:84:3011:91:3247:-225.295,0,-218.512	1/1:30:0,30:0:0:30:1076:-93.3528,-9.0309,0	1/1:172:0,172:0:0:172:6126:-525.855,-51.7772,0	1/1:64:0,64:0:0:64:2275:-194.729,-19.2659,0	1/1:48:0,48:0:0:48:1715:-147.731,-14.4494,0	1/1:108:0,108:0:0:108:3868:-327.992,-32.5112,0	1/1:134:0,134:0:0:134:4772:-415.342,-40.338,0	0/1:192:94,98:94:3364:98:3504:-240.401,0,-244.983	0/1:94:37,57:37:1332:57:2040:-147.26,0,-91.8494	0/1:164:89,75:89:3200:75:2680:-180.008,0,-238.805	1/1:106:0,106:0:0:106:3784:-323.28,-31.9092,0	1/1:10:0,10:0:0:10:360:-31.1548,-3.0103,0	1/1:179:0,179:0:0:179:6389:-553.457,-53.8844,0	1/1:142:0,142:0:0:142:5050:-430.117,-42.7463,0	1/1:15:0,15:0:0:15:536:-47.0363,-4.51545,0	1/1:217:0,217:0:0:217:7714:-660.994,-65.3235,0	1/1:69:0,69:0:0:69:2472:-210.185,-20.7711,0	1/1:16:0,16:0:0:16:567:-49.1975,-4.81648,0	0/1:11:4,7:4:144:7:248:-18.4373,0,-10.0023	1/1:204:0,204:0:0:204:7260:-623.797,-61.4101,0	1/1:72:0,72:0:0:72:2576:-220.16,-21.6742,0	1/1:9:0,9:0:0:9:324:-28.1017,-2.70927,0	1/1:167:0,167:0:0:167:5967:-510.12,-50.272,0	1/1:239:0,239:0:0:239:8542:-729.024,-71.9462,0	1/1:38:0,38:0:0:38:1344:-115.262,-11.4391,0	1/1:115:0,115:0:0:115:4036:-344.006,-34.6185,0	1/1:242:2,240:2:72:240:8570:-717.423,-66.0125,0	1/1:216:4,212:4:140:212:7572:-631.795,-52.0779,0	1/1:64:0,64:0:0:64:2296:-197.574,-19.2659,0	1/1:78:0,77:0:0:77:2752:-237.99,-23.1793,0	1/1:46:0,46:0:0:46:1640:-139.68,-13.8474,0	1/1:32:0,32:0:0:32:1144:-98.2059,-9.63296,0	0/1:121:56,65:56:1997:65:2336:-163.395,0,-143.427	0/1:104:37,67:37:1332:67:2382:-175.864,0,-88.7317	0/1:244:108,136:108:3868:136:4855:-345.198,0,-274.659	1/1:237:0,237:0:0:237:8430:-721.07,-71.3441,0	0/1:171:78,93:78:2785:93:3311:-236.616,0,-199.225	1/1:133:0,133:0:0:133:4767:-412.005,-40.037,0	1/1:19:0,19:0:0:19:680:-58.8754,-5.71957,0	0/1:161:81,80:81:2903:80:2872:-198.625,0,-212.863	0/1:154:65,89:65:2313:89:3162:-226.844,0,-161.651	0/1:266:98,167:98:3508:167:5955:-425.36,0,-235.396	0/1:47:24,23:24:860:23:823:-55.4318,0,-63.5657	0/1:90:37,52:37:1332:52:1853:-129.42,0,-92.983	1/1:57:0,57:0:0:57:2044:-174.501,-17.1587,0	0/1:128:58,70:58:2075:70:2512:-176.636,0,-148.46	0/1:22:13,9:13:468:9:324:-20.7142,0,-35.7912	1/1:55:0,55:0:0:55:1955:-169.605,-16.5567,0	1/1:79:0,79:0:0:79:2823:-243.138,-23.7814,0	1/1:67:0,67:0:0:67:2392:-205.41,-20.169,0	0/1:99:46,53:46:1652:53:1908:-132.746,0,-119.057	0/1:60:42,18:42:1512:18:644:-37.3911,0,-118.265	1/1:167:0,166:0:0:166:5911:-506.117,-49.971,0	1/1:110:0,110:0:0:110:3926:-332.859,-33.1133,0
chr01	20870194	.	C	A	109736	PASS	AB=0.475868;ABP=15.6918;AC=158;AF=0.840426;AN=188;AO=5455;CIGAR=1X;DP=6782;DPB=6782;DPRA=0;EPP=11848.4;EPPR=2871.53;GTI=3;LEN=1;MEANALT=1.05319;MQM=40.1175;MQMR=54.0553;NS=94;NUMALT=1;ODDS=0.209321;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194492;QR=46903;RO=1321;RPL=5455;RPP=11848.4;RPPR=2871.53;RPR=0;RUN=1;SAF=5455;SAP=11848.4;SAR=0;SRF=1321;SRP=2871.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1044:-87.3941,-8.72987,0	0/1:108:39,69:39:1368:69:2444:-172.421,0,-88.949	1/1:96:0,96:0:0:96:3431:-288.437,-28.8989,0	1/1:131:0,131:0:0:131:4708:-408.502,-39.4349,0	1/1:29:0,29:0:0:29:1044:-89.2746,-8.72987,0	1/1:38:0,38:0:0:38:1349:-113.623,-11.4391,0	0/1:85:44,41:44:1576:41:1453:-100.976,0,-116.172	1/1:122:0,122:0:0:122:4357:-365.691,-36.7257,0	1/1:61:0,61:0:0:61:2175:-183.303,-18.3628,0	1/1:57:0,57:0:0:57:2033:-177.044,-17.1587,0	1/1:40:1,39:1:36:39:1400:-117.334,-8.44552,0	1/1:55:0,55:0:0:55:1967:-164.716,-16.5567,0	0/1:55:34,21:34:1216:21:719:-44.271,0,-92.9164	1/1:46:0,45:0:0:45:1608:-136.952,-13.5464,0	0/1:44:26,18:26:932:18:648:-43.3054,0,-70.8054	1/1:46:0,46:0:0:46:1636:-139.227,-13.8474,0	1/1:31:1,30:1:36:30:1076:-87.0413,-5.7427,0	0/1:42:26,16:26:924:16:576:-35.7258,0,-70.2443	0/1:14:8,6:8:284:6:216:-14.4174,0,-21.6278	0/1:108:53,55:53:1896:55:1965:-138.557,0,-137.987	0/1:166:78,88:78:2755:88:3149:-219.806,0,-197.059	0/1:104:74,30:74:2632:30:1080:-64.32,0,-205.43	1/1:121:0,121:0:0:121:4309:-375.631,-36.4246,0	1/1:71:2,69:2:68:69:2445:-202.803,-14.9261,0	1/1:52:0,52:0:0:52:1849:-158.644,-15.6536,0	0/1:187:92,95:92:3266:95:3381:-240.559,0,-237.15	1/1:176:1,175:1:36:175:6214:-526.456,-49.3881,0	1/1:21:0,21:0:0:21:740:-63.7123,-6.32163,0	1/1:196:0,196:0:0:196:7014:-618.891,-59.0019,0	1/1:144:0,144:0:0:144:5162:-440.233,-43.3483,0	1/1:101:0,101:0:0:101:3585:-312.026,-30.404,0	1/1:2:0,2:0:0:2:72:-6.56353,-0.60206,0	1/1:13:0,13:0:0:13:468:-40.2109,-3.91339,0	0/1:5:1,4:1:36:4:144:-11.029,0,-2.08408	1/1:7:0,7:0:0:7:252:-21.6427,-2.10721,0	1/1:4:0,4:0:0:4:144:-11.0007,-1.20412,0	0/1:154:90,64:90:3208:64:2287:-154.631,0,-242.36	1/1:164:0,164:0:0:164:5810:-495.305,-49.3689,0	0/1:32:20,12:20:703:12:428:-27.0331,0,-53.6313	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	0/1:61:23,38:23:824:38:1349:-98.224,0,-55.8513	1/1:26:0,26:0:0:26:928:-80.5946,-7.82678,0	1/1:104:0,104:0:0:104:3732:-318.568,-31.3071,0	1/1:34:0,34:0:0:34:1220:-106.311,-10.235,0	1/1:44:0,44:0:0:44:1560:-135.823,-13.2453,0	1/1:61:0,61:0:0:61:2196:-193.916,-18.3628,0	1/1:95:0,95:0:0:95:3316:-277.304,-28.5979,0	0/1:152:73,79:73:2574:79:2824:-199.481,0,-185.021	0/1:70:40,30:40:1404:30:1049:-69.8397,0,-105.15	0/1:111:48,63:48:1678:63:2241:-161.049,0,-117.276	1/1:62:0,62:0:0:62:2215:-195.558,-18.6639,0	1/1:7:0,7:0:0:7:252:-22.2741,-2.10721,0	1/1:88:1,87:1:36:87:3109:-259.16,-22.9014,0	1/1:28:0,28:0:0:28:1008:-88.3307,-8.42884,0	1/1:17:0,17:0:0:17:612:-52.169,-5.11751,0	1/1:108:0,108:0:0:108:3846:-327.118,-32.5112,0	1/1:57:0,57:0:0:57:2039:-176.572,-17.1587,0	1/1:10:0,10:0:0:10:341:-30.5341,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.68688,-0.60206,0	1/1:56:0,56:0:0:56:2001:-171.494,-16.8577,0	1/1:67:0,67:0:0:67:2401:-208.418,-20.169,0	1/1:2:0,2:0:0:2:72:-6.65513,-0.60206,0	1/1:199:0,197:0:0:197:6929:-607.635,-59.3029,0	1/1:112:0,111:0:0:111:3968:-344.593,-33.4143,0	1/1:62:0,62:0:0:62:2220:-190.332,-18.6639,0	1/1:89:0,89:0:0:89:3149:-273.149,-26.7917,0	1/1:162:1,161:1:36:161:5765:-491.67,-45.1712,0	1/1:118:1,117:1:36:117:4188:-361.446,-31.9259,0	1/1:20:0,20:0:0:20:716:-61.3793,-6.0206,0	1/1:82:0,82:0:0:82:2944:-246.679,-24.6845,0	1/1:59:0,59:0:0:59:2099:-183.595,-17.7608,0	1/1:11:0,11:0:0:11:396:-34.4378,-3.31133,0	0/1:103:54,49:54:1924:49:1736:-116.49,0,-141.623	0/1:58:33,25:33:1172:25:885:-57.9283,0,-87.8039	0/1:110:54,56:54:1929:56:2002:-136.113,0,-140.275	1/1:132:0,132:0:0:132:4721:-412.228,-39.736,0	0/1:73:39,34:39:1383:34:1220:-80.7549,0,-102.314	1/1:96:0,96:0:0:96:3425:-286.978,-28.8989,0	1/1:34:0,34:0:0:34:1216:-101.908,-10.235,0	0/1:94:54,40:54:1923:40:1428:-94.3879,0,-144.73	0/1:78:39,39:39:1380:39:1389:-93.8452,0,-100.531	0/1:159:84,75:84:2988:75:2677:-184.313,0,-220.921	0/1:65:38,27:38:1327:27:968:-65.4039,0,-99.9923	0/1:52:24,28:24:856:28:997:-70.7818,0,-61.57	1/1:61:0,61:0:0:61:2184:-188.681,-18.3628,0	0/1:86:49,37:49:1752:37:1319:-89.4181,0,-131.613	0/1:29:14,15:14:504:15:540:-37.1022,0,-36.6561	1/1:56:0,56:0:0:56:1991:-167.301,-16.8577,0	1/1:48:0,48:0:0:48:1719:-145.124,-14.4494,0	1/1:24:0,24:0:0:24:845:-72.7956,-7.22472,0	0/1:64:34,30:34:1205:30:1080:-74.2904,0,-88.801	0/1:38:28,9:28:1000:9:320:-16.9207,0,-78.5946	1/1:119:0,119:0:0:119:4253:-367.341,-35.8226,0	1/1:69:0,68:0:0:68:2402:-208.625,-20.47,0
chr01	20959298	.	C	T	14952.2	PASS	AB=0.491537;ABP=3.89236;AC=29;AF=0.154255;AN=188;AO=710;CIGAR=1X;DP=4686;DPB=4686;DPRA=1.00325;EPP=5.76287;EPPR=1482.01;GTI=0;LEN=1;MEANALT=1;MQM=59.8141;MQMR=59.9645;NS=94;NUMALT=1;ODDS=7.07028;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24639;QR=141209;RO=3973;RPL=710;RPP=1544.76;RPPR=8630.27;RPR=0;RUN=1;SAF=370;SAP=5.76287;SAR=340;SRF=1164;SRP=1482.01;SRR=2809;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:948:0:0:0,-8.12781,-85.6319	0/1:19:11,8:11:396:8:288:-20.5474,0,-30.2632	0/0:65:65,0:65:2291:0:0:0,-19.5669,-206.447	0/0:33:33,0:33:1157:0:0:0,-9.93399,-104.434	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:25:20,5:20:669:5:180:-9.02631,0,-52.9947	0/0:59:58,1:58:2034:1:36:0,-14.2246,-179.756	0/0:46:45,1:45:1604:1:36:0,-10.2491,-141.052	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:127:127,0:127:4525:0:0:0,-38.2308,-407.418	0/0:55:54,0:54:1902:0:0:0,-16.2556,-171.133	0/1:74:25,49:25:892:49:1633:-124.967,0,-58.3235	0/0:40:40,0:40:1394:0:0:0,-12.0412,-125.756	0/1:66:29,37:29:1013:37:1297:-97.1526,0,-71.6114	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:35:35,0:35:1222:0:0:0,-10.536,-110.28	0/1:26:16,10:16:564:10:351:-24.0999,0,-43.2635	0/1:74:52,22:52:1833:22:698:-40.8358,0,-142.972	0/1:38:19,19:19:669:19:657:-48.0104,0,-49.0948	0/1:41:20,21:20:716:21:720:-52.748,0,-52.4255	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:25:23,2:23:804:2:72:0,-0.689027,-65.8398	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:43:22,21:22:792:21:752:-55.062,0,-58.6614	0/0:69:68,1:68:2417:1:36:0,-17.1728,-214.187	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:35:35,0:35:1218:0:0:0,-10.536,-109.919	0/0:119:119,0:119:4229:0:0:0,-35.8226,-380.789	0/0:110:110,0:110:3960:0:0:0,-33.1133,-356.589	0/0:98:95,3:95:3393:3:100:0,-20.1705,-296.245	0/0:126:126,0:126:4509:0:0:0,-37.9298,-405.976	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.531	0/1:134:55,79:55:1932:79:2786:-210.638,0,-133.816	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:74:55,19:55:1972:19:671:-38.4378,0,-155.479	0/0:28:26,2:26:936:2:68:0,-1.97113,-78.1018	0/1:39:17,22:17:612:22:746:-55.7098,0,-43.6733	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3756	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8379	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:49:20,29:20:720:29:1017:-77.087,0,-50.3783	0/1:17:4,13:4:140:13:406:-31.7222,0,-7.82707	0/1:34:18,16:18:629:16:553:-39.859,0,-46.6988	0/0:34:33,1:33:1171:1:36:0,-6.63674,-101.077	0/0:95:95,0:95:3385:0:0:0,-28.5978,-304.865	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.3013	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:103:103,0:103:3673:0:0:0,-31.0061,-330.773	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	0/0:24:24,0:24:828:0:0:0,-7.22472,-74.8333	0/0:73:72,1:72:2584:1:36:0,-18.3769,-229.211	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.763	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.465	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:50:50,0:50:1747:0:0:0,-15.0515,-157.508	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/0:125:125,0:125:4483:0:0:0,-37.6287,-403.638	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:89:88,0:88:3141:0:0:0,-26.4906,-282.526	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:33:17,16:17:612:16:516:-36.8086,0,-45.4794	0/1:58:32,26:32:1100:26:917:-65.3833,0,-81.8436	0/0:48:47,1:47:1684:1:36:0,-10.8512,-148.249	0/1:36:20,16:20:720:16:530:-37.175,0,-54.2917	0/0:45:45,0:45:1571:0:0:0,-13.5463,-141.677	0/0:189:189,0:189:6738:0:0:0,-56.8947,-606.494	0/1:38:23,15:23:816:15:521:-35.7772,0,-62.3226	0/1:22:10,12:10:351:12:417:-31.2376,0,-25.304	0/1:49:20,29:20:712:29:1009:-76.3678,0,-49.6562	0/1:50:18,32:18:640:32:1107:-84.8737,0,-42.8778	0/1:45:12,33:12:423:33:1176:-92.5991,0,-24.8587	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/1:106:46,60:46:1620:60:2122:-159.327,0,-114.177	0/1:17:8,9:8:273:9:316:-23.6613,0,-19.7827	0/0:31:31,0:31:1082:0:0:0,-9.33193,-97.6872	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/0:127:126,0:126:4488:0:0:0,-37.9298,-403.696	0/1:154:115,39:115:4117:39:1382:-78.3193,0,-324.353	0/1:38:5,33:5:176:33:1163:-93.537,0,-4.74588	0/0:31:31,0:31:1089:0:0:0,-9.33193,-98.3173	0/0:45:45,0:45:1584:0:0:0,-13.5463,-142.848
chr01	21094872	.	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chr01	21669284	.	TATCT	CATCT	78169.9	PASS	AB=0.719587;ABP=2192.6;AC=101;AF=0.537234;AN=188;AO=3902;CIGAR=1X4M;DP=5380;DPB=5380;DPRA=0;EPP=2171.52;EPPR=12.5161;GTI=16;LEN=1;MEANALT=1.1383;MQM=49.3262;MQMR=42.5321;NS=94;NUMALT=1;ODDS=0.201809;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127908;QR=51552;RO=1462;RPL=964;RPP=2171.52;RPPR=12.5161;RPR=2938;RUN=1;SAF=0;SAP=8476.1;SAR=3902;SRF=0;SRP=3177.7;SRR=1462;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:1,7:1:31:7:252:-20.5494,0,-0.215555	0/1:79:17,62:17:600:62:2220:-175.884,0,-18.1062	0/1:46:14,32:14:492:32:1152:-89.949,0,-22.642	0/1:109:25,84:25:863:84:2769:-211.656,0,-44.6125	1/1:25:2,23:2:72:23:672:-52.3812,-2.32697,0	1/1:20:2,18:2:72:18:633:-52.0963,-0.821816,0	0/1:57:23,34:23:798:34:1012:-69.8586,0,-54.9777	0/1:54:15,39:15:517:39:1400:-109.938,0,-20.5413	1/1:38:4,34:4:143:34:1163:-92.0086,-0.37767,0	0/1:69:23,46:23:815:46:1414:-102.002,0,-52.9005	0/1:42:11,31:11:395:31:976:-72.7124,0,-23.2489	0/1:51:12,39:12:424:39:1404:-111.303,0,-16.0371	0/1:50:15,35:15:527:35:1212:-92.7788,0,-21.6995	0/1:49:14,35:14:497:35:1169:-88.7486,0,-19.2119	0/1:45:12,33:12:431:33:1089:-82.6581,0,-25.5843	0/1:30:7,23:7:252:23:707:-51.9008,0,-9.22864	0/1:42:8,34:8:284:34:1220:-97.4635,0,-7.26672	0/1:42:11,31:11:393:31:1116:-88.1084,0,-16.1215	0/1:18:5,13:5:180:13:420:-31.0206,0,-7.16799	0/1:62:7,55:7:241:55:1654:-123.543,0,-3.36215	0/1:89:21,68:21:747:68:1828:-123.903,0,-25.9867	0/1:31:11,16:11:386:16:567:-42.6263,0,-17.8408	0/1:28:8,20:8:278:20:616:-45.1112,0,-16.9284	0/1:84:32,52:32:1137:52:1587:-111.531,0,-51.0381	0/1:22:11,11:11:390:11:379:-27.2535,0,-20.9477	0/1:135:32,103:32:1140:103:3517:-271.283,0,-54.9121	0/1:103:23,80:23:814:80:2200:-151.523,0,-26.1578	0/1:31:8,23:8:284:23:681:-49.2526,0,-9.35315	0/1:129:40,89:40:1408:89:3006:-226.689,0,-58.356	0/1:86:35,51:35:1241:51:1444:-95.8998,0,-59.434	0/1:65:13,51:13:457:51:1485:-106.983,0,-21.9684	0/1:18:4,13:4:144:13:403:-29.7898,0,-3.46555	0/1:4:1,3:1:36:3:82:-5.88771,0,-1.53208	0/1:21:4,17:4:144:17:612:-49.0918,0,-6.03039	0/1:11:7,4:7:241:4:144:-10.0023,0,-13.9619	0/1:6:2,4:2:72:4:120:-8.43978,0,-3.3926	0/1:196:48,147:48:1707:147:5244:-411.579,0,-55.2987	0/1:82:12,70:12:429:70:2389:-188.354,0,-5.099	0/1:35:11,24:11:391:24:856:-66.7369,0,-17.5075	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:106:37,69:37:1308:69:2218:-161.65,0,-52.9592	0/1:27:5,22:5:179:22:680:-51.085,0,-3.51527	0/1:51:19,32:19:661:32:1023:-73.7759,0,-31.1617	0/1:58:16,42:16:558:42:1398:-105.959,0,-33.0866	0/1:67:19,48:19:657:48:1625:-124.172,0,-39.1249	0/1:47:19,28:19:667:28:982:-73.9647,0,-31.5864	1/1:48:4,44:4:139:44:1584:-132.612,-4.21327,0	0/1:106:44,61:44:1561:61:1989:-143.067,0,-108.926	0/1:58:20,38:20:713:38:1069:-72.7637,0,-47.0376	0/1:99:24,75:24:833:75:2418:-182.093,0,-44.7047	0/1:103:16,87:16:561:87:3109:-248.608,0,-8.86908	0/1:19:2,17:2:72:17:469:-33.5392,0,-1.11715	0/1:60:13,47:13:449:47:1578:-120.834,0,-19.7397	0/1:7:4,3:4:136:3:108:-7.96796,0,-8.36663	1/1:4:0,4:0:0:4:144:-13.2956,-1.20412,0	0/1:77:25,52:25:876:52:1595:-114.756,0,-35.947	0/1:19:5,14:5:178:14:465:-35.5937,0,-10.5316	0/1:9:5,4:5:178:4:144:-10.6043,0,-9.44902	0/1:45:13,32:13:443:32:1125:-87.1965,0,-17.2855	0/1:29:7,22:7:232:22:719:-54.9258,0,-8.06744	0/1:85:31,54:31:1097:54:1609:-112.44,0,-71.9208	0/1:5:1,4:1:36:4:105:-7.37342,0,-2.09312	0/1:284:66,218:66:2318:218:7799:-616.011,0,-75.9666	0/1:81:24,57:24:837:57:1674:-118.666,0,-50.1655	0/1:68:28,38:28:994:38:1174:-81.2463,0,-44.6594	0/1:25:5,20:5:180:20:616:-46.0319,0,-9.02631	0/1:55:14,41:14:486:41:1248:-91.1801,0,-26.8073	0/1:47:18,27:18:647:27:894:-65.0912,0,-44.6763	0/1:16:6,10:6:207:10:334:-25.0191,0,-11.3723	0/1:60:19,41:19:669:41:1476:-115.074,0,-28.7101	0/1:103:26,76:26:912:76:2712:-212.879,0,-30.6695	0/1:17:4,13:4:141:13:390:-28.6026,0,-7.9194	0/1:32:8,24:8:282:24:849:-67.0949,0,-10.2394	0/1:53:21,32:21:738:32:1112:-82.9674,0,-48.438	0/1:46:11,35:11:377:35:959:-66.2191,0,-13.7033	0/1:108:19,89:19:671:89:2760:-207.02,0,-27.4249	0/1:18:5,12:5:180:12:377:-27.5361,0,-10.4108	0/1:72:24,47:24:839:47:1612:-120.92,0,-37.1659	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:60:14,46:14:503:46:1379:-100.627,0,-16.6743	0/1:52:11,41:11:393:41:1476:-117.319,0,-17.1407	0/1:64:18,46:18:633:46:1421:-104.21,0,-38.031	0/1:149:44,105:44:1543:105:3549:-269.685,0,-94.1099	0/1:26:9,17:9:318:17:556:-41.3209,0,-20.7004	0/1:47:13,34:13:467:34:1172:-90.3477,0,-27.3682	0/1:130:34,96:34:1215:96:3194:-243.376,0,-69.7444	0/1:43:8,35:8:282:35:1200:-93.4556,0,-8.54533	0/1:63:15,48:15:525:48:1709:-135.099,0,-24.273	0/1:69:20,49:20:719:49:1764:-138.25,0,-36.558	0/1:8:1,7:1:31:7:252:-20.6029,0,-0.215555	0/1:41:12,29:12:416:29:883:-63.4535,0,-14.5896	0/1:47:23,24:23:822:24:802:-56.8033,0,-58.9616	0/1:163:34,129:34:1204:129:3628:-256.58,0,-58.697	0/1:75:28,46:28:996:46:1355:-93.7581,0,-67.4456
chr01	22360091	.	A	G	171420	PASS	AB=0.53107;ABP=40.7918;AC=148;AF=0.787234;AN=188;AO=8071;CIGAR=1X;DP=10204;DPB=10204;DPRA=109.71;EPP=17529;EPPR=4613.05;GTI=1;LEN=1;MEANALT=1.09677;MQM=52.324;MQMR=49.7617;NS=94;NUMALT=1;ODDS=3.63748;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288764;QR=75982;RO=2123;RPL=8071;RPP=17529;RPPR=4613.05;RPR=0;RUN=1;SAF=0;SAP=17529;SAR=8071;SRF=0;SRP=4613.05;SRR=2123;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:0,76:0:0:76:2716:-243.989,-22.8783,0	0/1:83:24,59:24:864:59:2120:-166.083,0,-53.0869	1/1:239:1,238:1:36:238:8497:-760.446,-68.3483,0	1/1:231:3,228:3:108:228:8157:-720.75,-59.5323,0	0/1:126:59,67:59:2120:67:2389:-176.394,0,-151.807	0/1:22:5,17:5:180:17:608:-48.4294,0,-9.92736	0/1:69:24,45:24:860:45:1608:-123.676,0,-56.4251	1/1:195:0,195:0:0:195:6965:-626.605,-58.7009,0	1/1:176:1,175:1:32:175:6253:-559.333,-49.7821,0	1/1:113:0,113:0:0:113:4044:-361.554,-34.0164,0	1/1:65:0,65:0:0:65:2322:-207.073,-19.567,0	1/1:86:0,86:0:0:86:3071:-276.529,-25.8886,0	0/1:67:38,29:38:1368:29:1032:-73.0245,0,-103.103	0/1:55:32,23:32:1140:23:824:-57.5024,0,-85.3009	0/1:76:40,36:40:1424:36:1292:-93.1561,0,-104.668	1/1:64:0,64:0:0:64:2296:-205.51,-19.2659,0	1/1:31:0,31:0:0:31:1107:-99.9355,-9.33193,0	0/1:38:19,19:19:671:19:676:-49.7289,0,-49.2691	0/1:25:15,10:15:540:10:360:-25.2186,0,-41.4047	0/1:539:215,323:215:7682:323:11565:-872.583,0,-521.28	0/1:164:65,98:65:2319:98:3509:-265.534,0,-158.044	0/1:184:119,65:119:4256:65:2328:-152.69,0,-323.874	1/1:191:0,191:0:0:191:6825:-611.145,-57.4967,0	1/1:104:6,98:6:216:98:3520:-296.163,-11.6064,0	1/1:137:0,137:0:0:137:4912:-440.205,-41.2411,0	0/1:291:138,153:138:4952:153:5480:-401.759,0,-353.712	1/1:212:0,212:0:0:212:7577:-678.129,-63.8184,0	1/1:35:0,35:0:0:35:1260:-112.83,-10.5361,0	0/1:274:124,150:124:4452:150:5388:-398.256,0,-313.728	1/1:135:0,135:0:0:135:4836:-433.59,-40.6391,0	1/1:135:0,135:0:0:135:4848:-433.443,-40.6391,0	1/1:26:0,26:0:0:26:932:-83.9281,-7.82678,0	1/1:23:0,23:0:0:23:824:-74.0377,-6.92369,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.56877	1/1:6:0,6:0:0:6:216:-19.153,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:189:115,73:115:4132:73:2602:-175.379,0,-308.931	1/1:148:0,148:0:0:148:5309:-475.708,-44.5524,0	0/1:39:23,16:23:819:16:572:-39.943,0,-62.2604	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/1:96:43,53:43:1540:53:1908:-141.894,0,-109.282	1/1:27:0,27:0:0:27:972:-87.5208,-8.12781,0	1/1:272:0,271:0:0:271:9688:-866.846,-81.5791,0	1/1:68:0,68:0:0:68:2440:-218.529,-20.47,0	1/1:57:0,57:0:0:57:2039:-182.502,-17.1587,0	1/1:175:0,175:0:0:175:6245:-558.463,-52.6803,0	1/1:135:0,135:0:0:135:4828:-434.253,-40.6391,0	0/1:109:42,67:42:1504:67:2391:-181.115,0,-101.927	0/1:90:34,56:34:1182:56:2004:-152.555,0,-78.9755	0/1:96:38,58:38:1364:58:2080:-157.608,0,-93.3231	0/1:126:44,81:44:1576:81:2883:-220.541,0,-103.134	1/1:12:0,12:0:0:12:432:-39.0552,-3.61236,0	1/1:193:0,192:0:0:192:6869:-617.645,-57.7978,0	1/1:64:0,64:0:0:64:2296:-205.452,-19.2659,0	1/1:12:1,11:1:36:11:396:-32.3849,-0.0145306,0	1/1:139:0,138:0:0:138:4926:-441.514,-41.5421,0	1/1:48:0,48:0:0:48:1724:-154.225,-14.4494,0	1/1:6:0,6:0:0:6:216:-19.6871,-1.80618,0	0/1:20:13,7:13:468:7:252:-16.372,0,-36.0738	1/1:82:0,80:0:0:80:2859:-255.815,-24.0824,0	1/1:79:0,79:0:0:79:2828:-252.574,-23.7814,0	1/1:27:0,27:0:0:27:968:-86.8676,-8.12781,0	1/1:218:0,218:0:0:218:7816:-696.547,-65.6245,0	0/1:131:71,60:71:2548:60:2156:-154.063,0,-188.445	1/1:109:0,109:0:0:109:3906:-349.821,-32.8123,0	1/1:89:0,89:0:0:89:3196:-286.661,-26.7917,0	1/1:221:1,220:1:36:220:7845:-697.284,-63.2815,0	0/1:152:103,49:103:3677:49:1756:-111.288,0,-283.008	1/1:30:0,30:0:0:30:1080:-96.322,-9.0309,0	1/1:80:0,80:0:0:80:2861:-257.696,-24.0824,0	1/1:33:0,33:0:0:33:1176:-105.39,-9.93399,0	1/1:27:0,27:0:0:27:960:-86.3382,-8.12781,0	0/1:192:106,86:106:3784:86:3084:-219.755,0,-282.827	0/1:118:55,63:55:1968:63:2257:-167.669,0,-141.593	1/1:200:0,200:0:0:200:7134:-640.21,-60.206,0	1/1:282:0,282:0:0:282:10080:-900.078,-84.8905,0	0/1:110:40,70:40:1425:70:2512:-193.172,0,-95.3896	1/1:148:1,147:1:36:147:5260:-469.691,-40.9546,0	1/1:29:0,29:0:0:29:1017:-91.7361,-8.72987,0	0/1:127:50,77:50:1796:77:2749:-208.384,0,-122.671	0/1:109:41,68:41:1438:68:2432:-186.322,0,-96.8728	0/1:311:139,172:139:5000:172:6123:-453.948,0,-352.185	0/1:63:24,39:24:849:39:1404:-107.191,0,-56.8567	0/1:65:32,33:32:1152:33:1184:-86.6518,0,-83.3844	1/1:40:0,40:0:0:40:1436:-128.692,-12.0412,0	0/1:127:66,61:66:2376:61:2192:-158.05,0,-174.098	0/1:21:10,11:10:360:11:383:-28.4251,0,-26.4186	1/1:74:0,74:0:0:74:2648:-238.464,-22.2762,0	1/1:65:0,65:0:0:65:2323:-209.267,-19.567,0	0/1:33:17,16:17:612:16:572:-41.7362,0,-44.9256	0/1:85:34,51:34:1212:51:1824:-137.496,0,-83.3076	0/1:79:48,30:48:1728:30:1076:-72.4942,0,-131.022	1/1:114:0,114:0:0:114:4088:-366.105,-34.3174,0	1/1:108:0,108:0:0:108:3862:-345.421,-32.5112,0
chr01	22360093	.	G	A	34539.9	PASS	AB=0.469171;ABP=40.3649;AC=40;AF=0.212766;AN=188;AO=2140;CIGAR=1X;DP=10224;DPB=10224;DPRA=1.39727;EPP=4649.96;EPPR=17537.7;GTI=1;LEN=1;MEANALT=1.1087;MQM=49.6379;MQMR=52.3624;NS=94;NUMALT=1;ODDS=3.99514;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76581;QR=289406;RO=8075;RPL=2140;RPP=4649.96;RPPR=17537.7;RPR=0;RUN=1;SAF=0;SAP=4649.96;SAR=2140;SRF=0;SRP=17537.7;SRR=8075;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:74:74,0:74:2643:0:0:0,-22.2762,-237.422	0/1:84:60,24:60:2152:24:864:-52.7859,0,-168.66	0/0:236:235,1:235:8397:1:36:0,-67.4452,-751.809	0/0:233:230,3:230:8216:3:108:0,-60.1344,-726.215	0/1:127:68,58:68:2444:58:2069:-147.029,0,-181.069	0/1:22:16,6:16:576:6:216:-13.1654,0,-45.5523	0/1:68:44,24:44:1576:24:864:-57.0735,0,-121.104	0/0:197:197,0:197:7064:0:0:0,-59.3029,-635.396	0/0:173:172,1:172:6172:1:36:0,-48.4804,-551.621	0/0:115:115,0:115:4124:0:0:0,-34.6184,-368.716	0/0:65:65,0:65:2340:0:0:0,-19.5669,-207.871	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.49	0/1:69:30,39:30:1076:39:1400:-105.379,0,-76.3818	0/1:55:24,30:24:856:30:1076:-79.6307,0,-60.4719	0/1:77:37,39:37:1328:39:1400:-102.3,0,-96.0964	0/0:64:63,0:63:2264:0:0:0,-18.9649,-202.524	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.026	0/1:39:19,20:19:675:20:720:-53.38,0,-49.3368	0/1:25:10,15:10:360:15:540:-41.4047,0,-25.2186	0/1:540:327,213:327:11752:213:7648:-517.274,0,-888.812	0/1:166:99,67:99:3548:67:2408:-165.283,0,-268.538	0/1:186:65,121:65:2328:121:4316:-328.984,0,-152.088	0/0:193:193,0:193:6912:0:0:0,-58.0988,-618.821	0/0:103:96,7:96:3448:7:248:0,-8.65137,-287.263	0/0:139:139,0:139:4969:0:0:0,-41.8432,-445.116	0/1:290:148,141:148:5292:141:5064:-362.836,0,-385.635	0/0:212:210,2:210:7536:2:72:0,-57.4607,-668.178	0/0:35:35,0:35:1260:0:0:0,-10.536,-112.83	0/1:275:148,127:148:5297:127:4542:-321.513,0,-390.082	0/0:134:134,0:134:4796:0:0:0,-40.338,-430.304	0/0:134:134,0:134:4808:0:0:0,-40.338,-429.867	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.0545	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.3164	0/1:5:2,3:2:72:3:108:-8.56877,0,-5.33157	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.9122	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:192:73,119:73:2624:119:4257:-319.402,0,-176.437	0/0:149:149,0:149:5344:0:0:0,-44.8535,-478.452	0/1:40:17,23:17:612:23:828:-62.7716,0,-43.242	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/1:97:53,44:53:1908:44:1568:-111.474,0,-141.593	0/0:27:27,0:27:964:0:0:0,-8.12781,-86.8125	0/0:271:271,0:271:9716:0:0:0,-81.5791,-869.763	0/0:68:68,0:68:2440:0:0:0,-20.47,-218.529	0/0:59:59,0:59:2100:0:0:0,-17.7608,-188.255	0/0:174:174,0:174:6229:0:0:0,-52.3792,-556.997	0/0:136:136,0:136:4876:0:0:0,-40.9401,-438.595	0/1:107:65,42:65:2336:42:1504:-102.516,0,-176.781	0/1:89:58,31:58:2072:31:1104:-72.2679,0,-158.968	0/1:97:59,38:59:2081:38:1364:-93.0221,0,-157.431	0/1:126:80,45:80:2864:45:1601:-105.217,0,-218.798	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.0552	0/0:194:193,0:193:6921:0:0:0,-58.0988,-622.362	0/0:65:65,0:65:2324:0:0:0,-19.5669,-208.141	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:137:137,0:137:4904:0:0:0,-41.2411,-439.85	0/0:47:47,0:47:1692:0:0:0,-14.1484,-151.574	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6871	0/1:21:8,13:8:284:13:468:-35.7728,0,-18.9394	0/0:79:79,0:79:2840:0:0:0,-23.7814,-254.804	0/0:80:80,0:80:2856:0:0:0,-24.0824,-255.208	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.2092	0/0:218:217,0:217:7784:0:0:0,-65.3235,-693.414	0/1:133:60,73:60:2148:73:2586:-190.959,0,-152.754	0/0:113:113,0:113:4044:0:0:0,-34.0164,-362.05	0/0:89:89,0:89:3177:0:0:0,-26.7917,-284.892	0/0:220:219,1:219:7860:1:36:0,-62.9804,-697.789	0/1:152:49,103:49:1760:103:3694:-284.551,0,-111.64	0/0:30:30,0:30:1080:0:0:0,-9.0309,-96.322	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.133	0/0:33:33,0:33:1188:0:0:0,-9.93399,-106.31	0/0:28:28,0:28:1000:0:0:0,-8.42884,-89.845	0/1:192:85,107:85:3048:107:3760:-280.664,0,-216.517	0/1:115:63,52:63:2244:52:1856:-132.422,0,-167.44	0/0:202:202,0:202:7252:0:0:0,-60.8081,-650.758	0/0:280:280,0:280:10044:0:0:0,-84.2884,-896.009	0/1:111:71,40:71:2552:40:1432:-95.7208,0,-196.466	0/0:150:149,1:149:5333:1:36:0,-41.5567,-476.144	0/0:28:27,0:27:964:0:0:0,-8.12781,-86.6937	0/1:126:76,50:76:2732:50:1784:-121.914,0,-207.151	0/1:111:68,43:68:2444:43:1540:-105.344,0,-186.799	0/1:310:175,135:175:6257:135:4852:-339.157,0,-465.885	0/1:63:38,25:38:1364:25:900:-61.4058,0,-103.613	0/1:67:33,34:33:1188:34:1209:-87.8834,0,-86.4018	0/0:39:39,0:39:1388:0:0:0,-11.7402,-124.563	0/1:131:62,69:62:2228:69:2484:-182.547,0,-160.07	0/1:22:12,10:12:428:10:360:-26.1176,0,-32.1606	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.755	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.865	0/1:31:14,17:14:500:17:612:-45.5277,0,-35.8716	0/1:85:52,33:52:1860:33:1184:-80.7964,0,-140.506	0/1:79:29,50:29:1044:50:1791:-136.636,0,-69.6171	0/0:113:113,0:113:4056:0:0:0,-34.0164,-362.944	0/0:107:107,0:107:3844:0:0:0,-32.2102,-343.822
chr01	23112181	.	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chr01	23976390	.	A	T	15205.6	PASS	AB=0.481462;ABP=8.72643;AC=34;AF=0.182796;AN=186;AO=926;CIGAR=1X;DP=4186;DPB=4186;DPRA=1.50055;EPP=1996.46;EPPR=6993.25;GTI=1;LEN=1;MEANALT=1;MQM=59.5324;MQMR=59.8929;NS=93;NUMALT=1;ODDS=0.72837;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33153;QR=116674;RO=3259;RPL=2;RPP=1996.46;RPPR=6993.25;RPR=924;RUN=1;SAF=926;SAP=2013.79;SAR=0;SRF=3259;SRP=7079.84;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:57:30,27:30:1072:27:964:-69.9065,0,-79.6337	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:105:105,0:105:3763:0:0:0,-31.6081,-338.858	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/1:18:11,7:11:396:7:244:-16.8809,0,-30.5642	0/1:51:30,21:30:1072:21:756:-53.0009,0,-81.4399	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.472	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:51:25,26:25:896:26:928:-68.4834,0,-65.6078	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:39:17,22:17:612:22:792:-59.8517,0,-43.6733	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:39:19,20:19:680:20:720:-53.3859,0,-49.789	0/1:37:12,25:12:432:25:896:-69.8152,0,-28.0831	0/1:70:35,35:35:1248:35:1250:-91.7154,0,-91.5528	0/1:40:18,22:18:648:22:779:-58.3895,0,-46.6107	0/1:47:15,32:15:540:32:1120:-86.9489,0,-34.7881	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.559	0/0:61:59,2:59:2109:2:72:0,-11.5261,-183.24	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:121:68,53:68:2428:53:1900:-134.823,0,-182.349	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.113	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:129:77,52:77:2764:52:1864:-129.204,0,-210.168	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:45:45,0:45:1574:0:0:0,-13.5463,-141.941	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:151:76,75:76:2728:75:2691:-196.958,0,-200.307	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.787	0/1:45:25,20:25:900:20:720:-51.5824,0,-67.7747	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:43:22,21:22:792:21:756:-55.4123,0,-58.6614	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:44:44,0:44:1557:0:0:0,-13.2453,-140.42	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:52:31,21:31:1112:21:746:-51.8075,0,-84.7378	0/1:38:16,22:16:576:22:792:-60.1524,0,-40.7358	0/1:60:39,21:39:1396:21:756:-50.2916,0,-107.877	0/1:64:30,34:30:1076:34:1216:-90.4777,0,-77.8869	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:51:51,0:51:1812:0:0:0,-15.3525,-163.359	0/0:33:33,0:33:1150:0:0:0,-9.93399,-103.794	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.525	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:5,2:5:180:2:68:-4.33585,0,-14.4449	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.744	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.34	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:56:38,18:38:1364:18:648:-41.7765,0,-106.184	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:41:40,1:40:1436:1:36:0,-8.7444,-125.94	0/0:67:66,1:66:2345:1:36:0,-16.586,-207.228	0/0:58:57,0:57:2040:0:0:0,-17.1587,-183.195	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6342	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/0:62:62,0:62:2232:0:0:0,-18.6639,-200.516	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:46:18,28:18:648:28:995:-76.0026,0,-44.8045	0/1:22:10,12:10:360:12:432:-32.5962,0,-26.1216	0/0:53:53,0:53:1877:0:0:0,-15.9546,-169.207	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4958	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:41:25,16:25:896:16:576:-39.8328,0,-68.6181	0/1:32:17,15:17:608:15:540:-39.2965,0,-45.4191	0/1:73:47,26:47:1688:26:927:-61.7584,0,-130.232	0/1:67:30,37:30:1080:37:1332:-99.9855,0,-77.3442	0/1:47:22,25:22:792:25:900:-67.1584,0,-57.4573	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:144:76,68:76:2732:68:2438:-175.788,0,-202.774	0/1:51:25,26:25:900:26:932:-68.8416,0,-65.9638	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:83:35,48:35:1256:48:1728:-130.781,0,-88.3598	0/1:47:18,29:18:648:29:1027:-78.366,0,-44.5035	0/0:29:29,0:29:1044:0:0:0,-8.72987,-93.7169	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998
chr01	24752018	.	ATG	ATA,GTA	244157	PASS	AB=0.490977,0.507986;ABP=6.41953,5.68084;AC=152,36;AF=0.808511,0.191489;AN=188;AO=8798,2454;CIGAR=2M1X,1X1M1X;DP=11272;DPB=11282.7;DPRA=0,1.39382;EPP=19098.9,5331.8;EPPR=7.35324;GTI=3;LEN=1,3;MEANALT=1.60638,2.15;MQM=59.9704,59.9776;MQMR=60;NS=94;NUMALT=2;ODDS=1.46858;PAIRED=0,0;PAIREDR=0;PAO=13.5,18.5;PQA=486,662;PQR=0;PRO=0;QA=314510,86426;QR=64;RO=2;RPL=8797,2454;RPP=19098.9,5331.8;RPPR=7.35324;RPR=1,0;RUN=1,1;SAF=8796,2454;SAP=19090.3,5331.8;SAR=2,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:82:0,82,0:0:0:82,0:2924,0:-263.396,-24.6845,0,-263.396,-24.6845,-263.396	1/2:108:0,49,59:0:0:49,59:1764,2072:-312.924,-168.987,-154.236,-144.293,0,-126.533	1/1:211:1,210,0:1:28:210,0:7528,0:-674.133,-60.7176,0,-674.434,-63.2163,-676.652	1/1:433:0,431,0:0:0:431,0:15431,0:-1388.13,-129.744,0,-1388.13,-129.744,-1388.13	1/2:69:0,26,43:0:0:26,43:932,1540:-201.963,-125.949,-118.122,-76.3721,0,-63.4278	1/2:91:0,48,43:0:0:48,43:1708,1500:-261.528,-122.347,-107.897,-139.533,0,-126.589	1/2:171:0,93,78:0:0:93,78:3323,2729:-493.311,-222.372,-194.376,-271.292,0,-247.812	1/1:174:0,174,0:0:0:174,0:6208,0:-558.626,-52.3792,0,-558.626,-52.3792,-558.626	1/1:179:0,179,0:0:0:179,0:6416,0:-577.527,-53.8844,0,-577.527,-53.8844,-577.527	1/1:101:0,101,0:0:0:101,0:3597,0:-323.935,-30.404,0,-323.935,-30.404,-323.935	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3154,-8.42884,0,-90.3154,-8.42884,-90.3154	1/1:79:0,79,0:0:0:79,0:2809,0:-253.049,-23.7814,0,-253.049,-23.7814,-253.049	1/2:61:0,29,32:0:0:29,32:1040,1135:-177.654,-92.8257,-84.0958,-85.1845,0,-75.5515	1/1:51:0,51,0:0:0:51,0:1824,0:-164.441,-15.3525,0,-164.441,-15.3525,-164.441	1/2:80:0,45,34:0:0:45,34:1616,1214:-230.798,-98.972,-85.4257,-131.824,0,-121.589	1/1:58:0,58,0:0:0:58,0:2080,0:-187.466,-17.4597,0,-187.466,-17.4597,-187.466	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:23:0,14,9:0:0:14,9:504,324:-67.9204,-26.7966,-22.5822,-41.4837,0,-38.7744	1/2:16:0,7,9:0:0:7,9:237,321:-45.7295,-26.524,-24.4168,-19.5518,0,-16.8426	1/2:259:0,128,131:0:0:128,131:4580,4619:-749.922,-376.443,-337.912,-373.834,0,-334.399	1/2:194:0,104,90:0:0:104,90:3724,3125:-557.676,-253.974,-222.667,-303.734,0,-276.641	1/2:154:0,49,105:0:0:49,105:1752,3643:-438.911,-296.052,-281.301,-142.796,0,-111.188	1/1:231:0,230,1:0:0:230,1:8230,36:-740.223,-69.2369,0,-737.285,-65.9397,-736.984	1/2:97:0,86,11:0:0:86,11:3081,385:-282.951,-31.6734,-5.78479,-251.628,0,-248.317	1/1:70:0,69,0:0:0:69,0:2472,0:-222.482,-20.7711,0,-222.482,-20.7711,-222.482	1/2:375:0,192,183:0:0:192,183:6873,6485:-1088.59,-528.113,-470.315,-560.301,0,-505.212	1/1:300:0,299,0:0:0:299,0:10703,0:-962.817,-90.008,0,-962.817,-90.008,-962.817	1/1:17:0,17,0:0:0:17,0:599,0:-54.2381,-5.11751,0,-54.2381,-5.11751,-54.2381	1/2:355:0,175,180:0:0:175,180:6240,6347:-1025.56,-516.902,-464.222,-508.777,0,-454.591	1/1:209:1,207,0:1:36:207,0:7410,0:-663.4,-59.3209,0,-663.701,-62.3132,-666.638	1/1:201:0,201,0:0:0:201,0:7183,0:-646.524,-60.507,0,-646.524,-60.507,-646.524	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:15:0,15,0:0:0:15,0:527,0:-47.7602,-4.51545,0,-47.7602,-4.51545,-47.7602	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:12:0,12,0:0:0:12,0:419,0:-38.0427,-3.61236,0,-38.0427,-3.61236,-38.0427	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:146:0,72,74:0:0:72,74:2549,2618:-421.043,-213.415,-191.741,-207.805,0,-185.529	1/1:172:0,171,1:0:0:171,1:6123,33:-550.839,-51.4761,0,-548.171,-48.478,-547.87	1/2:25:0,13,12:0:0:13,12:468,426:-73.2546,-35.0656,-31.1522,-38.5463,0,-34.9339	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:186:0,100,86:0:0:100,86:3596,3028:-540.25,-246.864,-216.761,-293.742,0,-267.854	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:242:0,242,0:0:0:242,0:8647,0:-778.226,-72.8493,0,-778.226,-72.8493,-778.226	1/1:51:0,51,0:0:0:51,0:1832,0:-165.161,-15.3525,0,-165.161,-15.3525,-165.161	1/1:48:0,48,0:0:0:48,0:1699,0:-153.195,-14.4494,0,-153.195,-14.4494,-153.195	1/1:204:0,204,0:0:0:204,0:7294,0:-656.389,-61.4101,0,-656.389,-61.4101,-656.389	1/1:191:0,191,0:0:0:191,0:6812,0:-613.153,-57.4967,0,-613.153,-57.4967,-613.153	1/2:231:0,114,116:0:0:114,116:4053,4053:-659.417,-329.755,-295.438,-329.727,0,-294.808	1/2:149:0,68,81:0:0:68,81:2428,2861:-431.239,-233.345,-212.875,-198.249,0,-173.866	1/2:146:0,76,70:0:0:76,70:2728,2475:-424.459,-201.93,-179.052,-222.884,0,-201.812	1/2:221:0,96,125:0:0:96,125:3443,4369:-636.59,-355.761,-326.862,-281.184,0,-243.555	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:156:0,156,0:0:0:156,0:5584,0:-502.682,-46.9607,0,-502.682,-46.9607,-502.682	1/1:129:0,127,0:0:0:127,0:4536,0:-408.037,-38.2308,0,-408.037,-38.2308,-408.037	1/1:15:0,15,0:0:0:15,0:532,0:-48.2131,-4.51545,0,-48.2131,-4.51545,-48.2131	1/1:225:0,225,0:0:0:225,0:8013,0:-721.192,-67.7318,0,-721.192,-67.7318,-721.192	1/1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chr01	25276376	.	C	T	17556.1	PASS	AB=0.440582;ABP=133.582;AC=35;AF=0.18617;AN=188;AO=1885;CIGAR=1X;DP=9993;DPB=9993;DPRA=1.33565;EPP=4009.84;EPPR=15939.4;GTI=0;LEN=1;MEANALT=1.05263;MQM=59.922;MQMR=59.9954;NS=94;NUMALT=1;ODDS=2.28773;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52808;QR=290719;RO=8104;RPL=1875;RPP=4009.84;RPPR=15939.4;RPR=10;RUN=1;SAF=0;SAP=4096.24;SAR=1885;SRF=0;SRP=17600.6;SRR=8104;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:141:84,57:84:3009:57:1641:-105.49,0,-228.593	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:347:347,0:347:12458:0:0:0,-104.457,-1121.05	0/1:52:26,26:26:936:26:707:-48.2314,0,-68.9059	0/1:47:34,13:34:1216:13:385:-20.7845,0,-95.5982	0/1:137:88,49:88:3160:49:1466:-90.9555,0,-243.383	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.228	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/0:146:145,1:145:5161:1:21:0,-41.8504,-462.53	0/0:100:100,0:100:3583:0:0:0,-30.103,-322.676	0/0:82:82,0:82:2926:0:0:0,-24.6845,-263.574	0/1:66:37,29:37:1324:29:743:-47.2453,0,-99.5941	0/0:168:168,0:168:6025:0:0:0,-50.573,-542.351	0/1:70:43,27:43:1536:27:727:-44.6124,0,-117.461	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:127:127,0:127:4568:0:0:0,-38.2308,-411.283	0/1:93:42,51:42:1508:51:1553:-112.031,0,-108.019	0/1:93:60,33:60:2156:33:817:-45.7704,0,-166.308	0/1:174:92,82:92:3296:82:2389:-162.86,0,-244.48	0/1:169:95,74:95:3400:74:1914:-121.607,0,-255.341	0/1:166:79,87:79:2840:87:2298:-157.068,0,-205.867	0/0:238:238,0:238:8529:0:0:0,-71.6451,-767.606	0/0:120:113,7:113:4064:7:218:0,-16.1992,-346.021	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.72	0/1:274:156,118:156:5599:118:3130:-199.418,0,-421.548	0/0:147:147,0:147:5288:0:0:0,-44.2514,-476.052	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.577	0/1:250:140,110:140:5020:110:3011:-195.939,0,-376.688	0/0:178:178,0:178:6389:0:0:0,-53.5833,-575.095	0/0:228:228,0:228:8183:0:0:0,-68.6348,-736.48	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:201:113,88:113:4056:88:2423:-157.782,0,-304.719	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/1:100:58,42:58:2084:42:1226:-80.4586,0,-157.727	0/1:7:5,2:5:180:2:57:-3.3061,0,-14.4449	0/1:128:72,55:72:2580:55:1624:-107.878,0,-193.918	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.957	0/0:142:142,0:142:5108:0:0:0,-42.7463,-459.86	0/0:147:147,0:147:5288:0:0:0,-44.2514,-476.052	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.4551	0/0:114:114,0:114:4092:0:0:0,-34.3174,-368.465	0/0:72:72,0:72:2565:0:0:0,-21.6742,-231.099	0/1:88:32,56:32:1152:56:1605:-118.182,0,-77.4995	0/1:135:75,60:75:2687:60:1643:-107.468,0,-201.435	0/1:168:73,95:73:2616:95:2652:-188.318,0,-185.115	0/1:190:116,74:116:4149:74:2143:-135.909,0,-316.396	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:135:135,0:135:4825:0:0:0,-40.639,-434.404	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:120:120,0:120:4292:0:0:0,-36.1236,-386.458	0/0:52:51,0:51:1821:0:0:0,-15.3525,-163.809	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:15:7,8:7:252:8:239:-17.2862,0,-18.5135	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:158:158,0:158:5680:0:0:0,-47.5627,-511.316	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:151:151,0:151:5404:0:0:0,-45.4555,-486.491	0/1:163:88,75:88:3168:75:2172:-146.645,0,-236.275	0/0:120:120,0:120:4282:0:0:0,-36.1236,-385.554	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/0:227:226,1:226:8104:1:36:0,-64.7355,-725.777	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:97:59,38:59:2120:38:1201:-79.168,0,-161.869	0/1:74:46,28:46:1656:28:800:-49.9905,0,-127.052	0/0:211:211,0:211:7580:0:0:0,-63.5173,-682.235	0/0:160:160,0:160:5748:0:0:0,-48.1648,-517.433	0/1:113:57,56:57:2052:56:1650:-114.733,0,-150.935	0/0:141:140,0:140:5018:0:0:0,-42.1442,-451.405	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:91:48,43:48:1724:43:1191:-80.0438,0,-128.052	0/1:94:59,34:59:2120:34:912:-53.9753,0,-162.713	0/1:158:97,61:97:3488:61:1801:-114.772,0,-266.567	0/1:111:64,47:64:2300:47:1265:-80.6787,0,-173.846	0/1:87:60,27:60:2156:27:839:-49.6062,0,-168.117	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:180:108,72:108:3884:72:1969:-123.232,0,-295.567	0/1:52:31,21:31:1112:21:588:-37.5329,0,-84.7378	0/0:104:104,0:104:3744:0:0:0,-31.3071,-337.158	0/0:103:103,0:103:3687:0:0:0,-31.0061,-332.032	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/1:151:88,63:88:3164:63:1867:-122.821,0,-239.528	0/1:123:48,75:48:1728:75:1885:-132.842,0,-118.779	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082	0/0:130:130,0:130:4680:0:0:0,-39.1339,-421.358
chr01	25276388	.	GCGC	CCGC,CCGT	231885	PASS	AB=0.467374,0.528498;ABP=50.052,38.9028;AC=152,36;AF=0.808511,0.191489;AN=188;AO=8086,2703;CIGAR=1X3M,1X2M1X;DP=10833;DPB=10833.2;DPRA=0,1.48471;EPP=17561.5,5872.5;EPPR=5.18177;GTI=6;LEN=1,4;MEANALT=1.85106,2.4878;MQM=59.9942,59.9071;MQMR=60;NS=94;NUMALT=2;ODDS=1.14956;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=289692,94395;QR=36;RO=1;RPL=8086,2703;RPP=17561.5,5872.5;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=17561.5,5872.5;SAR=8086,2703;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,30,0:0:0:30,0:1080,0:-97.1534,-9.0309,0,-97.1534,-9.0309,-97.1534	1/2:161:0,83,78:0:0:83,78:2959,2733:-463.939,-222.734,-197.749,-241.558,0,-218.078	1/1:66:0,66,0:0:0:66,0:2372,0:-213.738,-19.868,0,-213.738,-19.868,-213.738	1/1:347:0,346,0:0:0:346,0:12385,0:-1114.2,-104.156,0,-1114.2,-104.156,-1114.2	1/2:65:0,26,39:0:0:26,39:936,1369:-188.144,-111.768,-103.941,-76.7327,0,-64.9925	1/2:53:0,34,19:0:0:34,19:1224,668:-154.601,-54.7237,-44.4887,-100.232,0,-94.5124	1/2:155:0,84,70:0:0:84,70:3012,2462:-446.072,-200.403,-175.116,-245.664,0,-224.592	1/1:88:0,88,0:0:0:88,0:3148,0:-283.502,-26.4906,0,-283.502,-26.4906,-283.502	1/1:84:0,83,0:0:0:83,0:2980,0:-268.072,-24.9855,0,-268.072,-24.9855,-268.072	1/1:146:0,145,1:0:0:145,1:5200,36:-467.75,-43.6494,0,-464.812,-40.3521,-464.511	1/1:99:0,99,0:0:0:99,0:3531,0:-318,-29.802,0,-318,-29.802,-318	1/1:79:0,79,0:0:0:79,0:2830,0:-254.878,-23.7814,0,-254.878,-23.7814,-254.878	1/2:86:0,36,50:0:0:36,50:1296,1766:-249.92,-144.17,-133.333,-106.107,0,-91.0554	1/1:169:0,169,0:0:0:169,0:6017,0:-541.634,-50.8741,0,-541.634,-50.8741,-541.634	1/2:78:0,43,34:0:0:43,34:1548,1196:-223.653,-97.3392,-84.3949,-126.309,0,-116.074	1/1:75:0,73,1:0:0:73,1:2601,30:-234.007,-21.9752,0,-231.609,-19.6065,-231.308	1/1:127:0,127,0:0:0:127,0:4546,0:-409.306,-38.2308,0,-409.306,-38.2308,-409.306	1/2:115:0,42,73:0:0:42,73:1508,2529:-328.877,-205.86,-193.217,-123.371,0,-101.396	1/2:141:0,60,81:0:0:60,81:2160,2718:-396.74,-220.488,-202.426,-176.602,0,-152.218	1/2:199:0,91,108:0:0:91,108:3272,3740:-571.235,-304.283,-276.889,-267.305,0,-234.794	1/2:195:0,94,100:0:0:94,100:3360,3489:-557.794,-283.826,-255.529,-274.109,0,-244.006	1/2:190:0,77,113:0:0:77,113:2764,3915:-544.002,-318.534,-295.355,-225.822,0,-191.805	1/1:239:1,237,0:1:36:237,0:8485,0:-760.051,-68.4067,0,-760.352,-71.3441,-763.289	1/1:120:0,108,10:0:0:108,10:3872,346:-348.328,-32.5112,0,-320.213,-4.38977,-317.202	1/1:76:0,76,0:0:0:76,0:2728,0:-245.763,-22.8783,0,-245.763,-22.8783,-245.763	1/2:318:0,157,158:0:0:157,158:5636,5546:-911.116,-451.374,-404.112,-459.76,0,-412.197	1/1:147:0,146,0:0:0:146,0:5235,0:-470.927,-43.9504,0,-470.927,-43.9504,-470.927	1/1:68:0,68,0:0:0:68,0:2448,0:-220.574,-20.47,0,-220.574,-20.47,-220.574	1/2:288:0,141,147:0:0:141,147:5057,5166:-833.311,-420.839,-378.394,-412.827,0,-368.575	1/1:178:0,177,0:0:0:177,0:6354,0:-571.588,-53.2823,0,-571.588,-53.2823,-571.588	1/1:224:0,223,0:0:0:223,0:7960,0:-716.176,-67.1297,0,-716.176,-67.1297,-716.176	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:17:0,16,0:0:0:16,0:572,0:-51.4537,-4.81648,0,-51.4537,-4.81648,-51.4537	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:5:0,4,0:0:0:4,0:144,0:-12.9538,-1.20412,0,-12.9538,-1.20412,-12.9538	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/2:250:0,113,136:0:0:113,136:4064,4716:-714.883,-383.309,-349.292,-331.569,0,-290.629	1/1:110:0,110,0:0:0:110,0:3948,0:-355.511,-33.1133,0,-355.511,-33.1133,-355.511	1/2:126:0,56,69:0:0:56,69:2012,2440:-362.963,-198.824,-181.966,-164.244,0,-143.472	1/2:7:0,5,2:0:0:5,2:180,71:-20.8306,-6.14,-4.63485,-15.0469,0,-14.4449	1/2:151:0,74,77:0:0:74,77:2648,2697:-435.733,-219.796,-197.52,-216.29,0,-193.111	1/1:74:0,74,0:0:0:74,0:2656,0:-239.286,-22.2762,0,-239.286,-22.2762,-239.286	1/1:144:0,144,0:0:0:144,0:5149,0:-463.55,-43.3483,0,-463.55,-43.3483,-463.55	1/1:146:0,145,0:0:0:145,0:5212,0:-468.936,-43.6494,0,-468.936,-43.6494,-468.936	1/1:2:0,2,0:0:0:2,0:66,0:-6.2663,-0.60206,0,-6.2663,-0.60206,-6.2663	1/1:116:0,116,0:0:0:116,0:4152,0:-373.863,-34.9195,0,-373.863,-34.9195,-373.863	1/1:71:0,71,0:0:0:71,0:2531,0:-228.04,-21.3731,0,-228.04,-21.3731,-228.04	1/2:105:0,34,71:0:0:34,71:1220,2408:-295.12,-195.6,-185.365,-99.8718,0,-78.4987	1/2:153:0,78,74:0:0:78,74:2800,2539:-434.533,-206.124,-182.644,-228.399,0,-206.123	1/2:208:0,74,132:0:0:74,132:2652,4627:-592.845,-376.55,-354.274,-216.348,0,-176.612	1/2:209:0,113,93:0:0:113,93:4024,3288:-595.784,-267.807,-233.79,-327.991,0,-299.996	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:134:0,133,1:0:0:133,1:4760,36:-428.198,-40.037,0,-425.261,-36.7397,-424.959	1/1:95:0,95,0:0:0:95,0:3412,0:-307.293,-28.5979,0,-307.293,-28.5979,-307.293	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/1:123:0,123,0:0:0:123,0:4395,0:-395.721,-37.0267,0,-395.721,-37.0267,-395.721	1/1:53:0,52,0:0:0:52,0:1868,0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chr01	25424140	.	A	G	37799.9	PASS	AB=0.508394;ABP=5.70789;AC=36;AF=0.191489;AN=188;AO=2254;CIGAR=1X;DP=10564;DPB=10564;DPRA=1.21562;EPP=4897.51;EPPR=18045.8;GTI=1;LEN=1;MEANALT=1.02273;MQM=59.5839;MQMR=59.9279;NS=94;NUMALT=1;ODDS=1.11594;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80312;QR=294277;RO=8309;RPL=0;RPP=4897.51;RPPR=18045.8;RPR=2254;RUN=1;SAF=2254;SAP=4897.51;SAR=0;SRF=8309;SRP=18045.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:86:86,0:86:3060:0:0:0,-25.8886,-275.631	0/1:84:40,44:40:1424:44:1580:-117.198,0,-103.171	0/0:351:351,0:351:12483:0:0:0,-105.662,-1123.29	0/0:288:288,0:288:10231:0:0:0,-86.6966,-920.486	0/1:111:59,52:59:2112:52:1868:-134.982,0,-156.934	0/1:42:22,20:22:776:20:699:-50.5797,0,-57.5189	0/1:101:51,50:51:1797:50:1779:-129.878,0,-131.606	0/0:113:112,1:112:3977:1:36:0,-30.4181,-354.524	0/0:127:127,0:127:4517:0:0:0,-38.2308,-406.698	0/0:70:70,0:70:2459:0:0:0,-21.0721,-221.56	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.22	0/1:62:36,26:36:1258:26:928:-65.1726,0,-94.8544	0/0:34:33,1:33:1176:1:36:0,-6.63674,-102.549	0/1:45:27,18:27:960:18:648:-45.0955,0,-73.1699	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.931	0/0:36:36,0:36:1272:0:0:0,-10.8371,-114.783	0/1:32:16,16:16:557:16:564:-41.454,0,-40.8226	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:259:117,142:117:4112:142:5077:-379.075,0,-292.292	0/1:139:64,75:64:2280:75:2654:-197.256,0,-163.596	0/1:244:77,167:77:2722:167:5988:-465.296,0,-171.664	0/0:160:160,0:160:5623:0:0:0,-48.1648,-506.188	0/0:100:97,3:97:3411:3:104:0,-20.4002,-297.499	0/0:125:125,0:125:4426:0:0:0,-37.6287,-398.435	0/1:240:149,91:149:5268:91:3202:-216.1,0,-401.903	0/0:329:329,0:329:11635:0:0:0,-99.0389,-1046.95	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:274:100,174:100:3510:174:6226:-477.811,0,-233.625	0/0:169:169,0:169:5978:0:0:0,-50.8741,-538.129	0/0:102:102,0:102:3632:0:0:0,-30.7051,-327.084	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6048	0/1:168:88,80:88:3152:80:2844:-205.576,0,-233.329	0/0:131:131,0:131:4665:0:0:0,-39.4349,-419.941	0/1:45:19,26:19:680:26:928:-70.2208,0,-47.9828	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:159:82,77:82:2901:77:2752:-199.828,0,-213.458	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:328:328,0:328:11629:0:0:0,-98.7378,-1046.48	0/0:45:45,0:45:1588:0:0:0,-13.5463,-143.21	0/0:48:47,1:47:1676:1:36:0,-10.8512,-147.522	0/0:156:156,0:156:5459:0:0:0,-46.9607,-491.331	0/0:187:187,0:187:6658:0:0:0,-56.2926,-599.299	0/1:197:102,95:102:3595:95:3391:-245.991,0,-264.453	0/1:136:70,66:70:2493:66:2372:-172.766,0,-183.68	0/1:129:45,84:45:1581:84:3004:-231.643,0,-103.746	0/1:163:87,76:87:3082:76:2705:-194.602,0,-228.535	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:219:219,0:219:7779:0:0:0,-65.9256,-700.143	0/0:94:94,0:94:3308:0:0:0,-28.2968,-297.728	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:238:237,1:237:8397:1:36:0,-68.0469,-752.106	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.203	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:7:3,4:3:100:4:144:-11.2064,0,-7.22323	0/0:90:90,0:90:3151:0:0:0,-27.0927,-283.815	0/0:71:71,0:71:2505:0:0:0,-21.3731,-225.702	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:289:289,0:289:10192:0:0:0,-86.9977,-917.216	0/1:206:138,68:138:4843:68:2388:-153.149,0,-374	0/0:81:81,0:81:2865:0:0:0,-24.3834,-258.086	0/0:144:144,0:144:5095:0:0:0,-43.3483,-458.663	0/0:277:273,4:273:9673:4:144:0,-70.0717,-857.212	0/0:195:194,1:194:6920:1:36:0,-55.1026,-619.269	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:88:88,0:88:3121:0:0:0,-26.4906,-281.117	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:177:83,93:83:2908:93:3294:-243.409,0,-208.722	0/1:88:46,42:46:1628:42:1485:-107.38,0,-120.289	0/0:121:121,0:121:4243:0:0:0,-36.4246,-382.051	0/0:186:186,0:186:6572:0:0:0,-55.9916,-591.565	0/1:281:134,147:134:4720:147:5276:-390.378,0,-340.37	0/0:116:116,0:116:4128:0:0:0,-34.9195,-371.707	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:119:76,43:76:2630:43:1529:-102.077,0,-201.117	0/1:201:103,98:103:3615:98:3496:-254.338,0,-265.041	0/1:315:159,156:159:5625:156:5548:-404.595,0,-411.55	0/1:53:25,28:25:900:28:978:-72.367,0,-65.3664	0/1:62:32,30:32:1148:30:1068:-77.719,0,-84.966	0/0:47:46,1:46:1644:1:36:0,-10.5501,-144.65	0/1:107:49,58:49:1748:58:2060:-153.42,0,-125.394	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.85	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:69:30,39:30:1068:39:1369:-102.729,0,-75.661	0/1:46:14,32:14:504:32:1144:-89.4175,0,-31.8507	0/0:189:189,0:189:6691:0:0:0,-56.8947,-602.077	0/0:92:92,0:92:3261:0:0:0,-27.6948,-293.711
chr01	25771362	.	CTTAGGGCAT	CTTGGGGCAA,CTTAGGGCAG,CTTGGGTCAA	88829.1	PASS	AB=0.768344,0.157865,0.275229;ABP=1196.38,1832.12,50.8425;AC=169,17,2;AF=0.898936,0.0904255,0.0106383;AN=188;AO=5029,293,33;CIGAR=3M1X5M1X,9M1X,3M1X2M1X2M1X;DP=5835;DPB=5879;DPRA=0,1.97124,0.746833;EPP=10923.3,639.252,74.6689;EPPR=5.18177;GTI=10;LEN=10,1,10;MEANALT=2.52128,3.15,4.4;MQM=32.891,54.8532,20.5758;MQMR=60;NS=94;NUMALT=3;ODDS=588.137;PAIRED=0,0,0;PAIREDR=0;PAO=0,0,0;PQA=0,0,0;PQR=0;PRO=0;QA=155867,10485,1146;QR=29;RO=1;RPL=4974,193,15;RPP=10450.8,67.1095,3.60252;RPPR=5.18177;RPR=55,100,18;RUN=1,1,1;SAF=4974,193,15;SAP=10450.8,67.1095,3.60252;SAR=55,100,18;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,25,0,0:0:0:25,0,0:769,0,0:-63.3021,-7.52575,0,-63.3021,-7.52575,-63.3021,-63.3021,-7.52575,-63.3021,-63.3021	1/1:49:0,49,0,0:0:0:49,0,0:1490,0,0:-123.535,-14.7505,0,-123.535,-14.7505,-123.535,-123.535,-14.7505,-123.535,-123.535	1/1:50:0,44,0,0:0:0:44,0,0:1318,0,0:-108.857,-13.2453,0,-108.857,-13.2453,-108.857,-108.857,-13.2453,-108.857,-108.857	1/1:96:0,92,0,0:0:0:92,0,0:2945,0,0:-245.668,-27.6948,0,-245.668,-27.6948,-245.668,-245.668,-27.6948,-245.668,-245.668	1/1:49:0,44,0,0:0:0:44,0,0:1438,0,0:-119.536,-13.2453,0,-119.536,-13.2453,-119.536,-119.536,-13.2453,-119.536,-119.536	1/1:30:0,28,0,0:0:0:28,0,0:933,0,0:-78.6503,-8.42884,0,-78.6503,-8.42884,-78.6503,-78.6503,-8.42884,-78.6503,-78.6503	1/1:22:0,19,0,0:0:0:19,0,0:572,0,0:-46.9349,-5.71957,0,-46.9349,-5.71957,-46.9349,-46.9349,-5.71957,-46.9349,-46.9349	1/1:71:0,71,0,0:0:0:71,0,0:2247,0,0:-187.289,-21.3731,0,-187.289,-21.3731,-187.289,-187.289,-21.3731,-187.289,-187.289	1/1:26:0,26,0,0:0:0:26,0,0:743,0,0:-61.4086,-7.82678,0,-61.4086,-7.82678,-61.4086,-61.4086,-7.82678,-61.4086,-61.4086	1/1:23:0,22,0,0:0:0:22,0,0:715,0,0:-60.3252,-6.62266,0,-60.3252,-6.62266,-60.3252,-60.3252,-6.62266,-60.3252,-60.3252	1/1:38:0,37,0,0:0:0:37,0,0:1194,0,0:-99.0425,-11.1381,0,-99.0425,-11.1381,-99.0425,-99.0425,-11.1381,-99.0425,-99.0425	1/1:42:0,33,0,0:0:0:33,0,0:1048,0,0:-87.4037,-9.93399,0,-87.4037,-9.93399,-87.4037,-87.4037,-9.93399,-87.4037,-87.4037	1/1:44:0,39,0,0:0:0:39,0,0:1181,0,0:-97.9222,-11.7402,0,-97.9222,-11.7402,-97.9222,-97.9222,-11.7402,-97.9222,-97.9222	1/1:16:0,14,0,0:0:0:14,0,0:448,0,0:-37.2742,-4.21442,0,-37.2742,-4.21442,-37.2742,-37.2742,-4.21442,-37.2742,-37.2742	1/1:30:0,29,0,0:0:0:29,0,0:870,0,0:-71.839,-8.72987,0,-71.839,-8.72987,-71.839,-71.839,-8.72987,-71.839,-71.839	1/1:16:0,16,0,0:0:0:16,0,0:480,0,0:-39.5615,-4.81648,0,-39.5615,-4.81648,-39.5615,-39.5615,-4.81648,-39.5615,-39.5615	1/1:16:0,15,0,0:0:0:15,0,0:453,0,0:-37.4934,-4.51545,0,-37.4934,-4.51545,-37.4934,-37.4934,-4.51545,-37.4934,-37.4934	1/1:17:0,17,0,0:0:0:17,0,0:473,0,0:-38.4597,-5.11751,0,-38.4597,-5.11751,-38.4597,-38.4597,-5.11751,-38.4597,-38.4597	1/1:20:0,18,0,0:0:0:18,0,0:548,0,0:-45.3446,-5.41854,0,-45.3446,-5.41854,-45.3446,-45.3446,-5.41854,-45.3446,-45.3446	1/1:30:0,27,0,0:0:0:27,0,0:861,0,0:-71.438,-8.12781,0,-71.438,-8.12781,-71.438,-71.438,-8.12781,-71.438,-71.438	1/1:84:0,66,0,0:0:0:66,0,0:1910,0,0:-155.327,-19.868,0,-155.327,-19.868,-155.327,-155.327,-19.868,-155.327,-155.327	1/1:52:0,45,0,0:0:0:45,0,0:1367,0,0:-112.096,-13.5464,0,-112.096,-13.5464,-112.096,-112.096,-13.5464,-112.096,-112.096	1/1:55:0,49,0,0:0:0:49,0,0:1591,0,0:-132.959,-14.7505,0,-132.959,-14.7505,-132.959,-132.959,-14.7505,-132.959,-132.959	1/2:58:0,52,6,0:0:0:52,6,0:1636,216,0:-136.209,-17.221,-1.56748,-119.045,0,-117.238,-136.209,-17.221,-119.045,-136.209	1/1:20:0,14,0,0:0:0:14,0,0:472,0,0:-39.7974,-4.21442,0,-39.7974,-4.21442,-39.7974,-39.7974,-4.21442,-39.7974,-39.7974	1/2:72:1,53,18,0:1:29:53,18,0:1634,644,0:-167.892,-49.9818,-36.335,-115.931,0,-112.821,-168.193,-52.2896,-118.239,-170.501	1/1:81:0,73,0,0:0:0:73,0,0:2245,0,0:-185.335,-21.9752,0,-185.335,-21.9752,-185.335,-185.335,-21.9752,-185.335,-185.335	1/2:19:0,11,5,0:0:0:11,5,0:331,176,0:-38.0756,-14.383,-11.0716,-23.7398,0,-22.2347,-38.0756,-14.383,-23.7398,-38.0756	1/1:36:0,29,0,0:0:0:29,0,0:829,0,0:-67.6814,-8.72987,0,-67.6814,-8.72987,-67.6814,-67.6814,-8.72987,-67.6814,-67.6814	1/1:26:0,24,0,0:0:0:24,0,0:760,0,0:-62.6649,-7.22472,0,-62.6649,-7.22472,-62.6649,-62.6649,-7.22472,-62.6649,-62.6649	1/2:37:0,29,8,0:0:0:29,8,0:903,288,0:-89.6448,-23.7555,-15.0256,-66.2321,0,-63.8239,-89.6448,-23.7555,-66.2321,-89.6448	1/2:98:0,69,18,0:0:0:69,18,0:2182,644,0:-212.36,-52.2614,-31.4903,-160.135,0,-154.716,-212.36,-52.2614,-160.135,-212.36	1/1:217:0,192,0,0:0:0:192,0,0:6154,0,0:-512.067,-57.7978,0,-512.067,-57.7978,-512.067,-512.067,-57.7978,-512.067,-512.067	1/2:464:0,388,74,0:0:0:388,74,0:11923,2660,0:-1086.48,-216.836,-100.036,-869.652,0,-847.376,-1086.48,-216.836,-869.652,-1086.48	1/1:175:0,172,0,0:0:0:172,0,0:5278,0,0:-438.19,-51.7772,0,-438.19,-51.7772,-438.19,-438.19,-51.7772,-438.19,-438.19	1/2:449:0,350,49,0:0:0:350,49,0:10614,1760,0:-915.353,-143.286,-37.9258,-772.101,0,-757.35,-915.353,-143.286,-772.101,-915.353	1/1:19:0,13,0,0:0:0:13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chr01	25784327	.	G	A	91978.3	PASS	AB=0.476344;ABP=16.5715;AC=150;AF=0.806452;AN=186;AO=4369;CIGAR=1X;DP=5852;DPB=5852;DPRA=31.7935;EPP=9403.51;EPPR=3167.06;GTI=6;LEN=1;MEANALT=1.02174;MQM=59.9091;MQMR=59.9048;NS=93;NUMALT=1;ODDS=0.70723;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155823;QR=52780;RO=1481;RPL=4359;RPP=9403.51;RPPR=3167.06;RPR=10;RUN=1;SAF=0;SAP=9490.17;SAR=4369;SRF=0;SRP=3218.96;SRR=1481;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1044:-94.2572,-8.72987,0	0/1:95:53,42:53:1896:42:1508:-107.409,0,-142.32	1/1:68:0,68:0:0:68:2419:-217.966,-20.47,0	1/1:73:0,73:0:0:73:2594:-233.708,-21.9752,0	0/1:31:21,10:21:744:10:360:-23.4124,0,-57.95	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	0/1:74:49,24:49:1751:24:864:-55.7475,0,-135.538	1/1:81:0,81:0:0:81:2872:-258.715,-24.3834,0	1/1:19:1,18:1:36:18:648:-55.0536,-2.1213,0	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	1/1:72:1,71:1:36:71:2544:-225.584,-18.0759,0	1/1:66:0,66:0:0:66:2344:-211.218,-19.868,0	0/1:60:32,28:32:1139:28:1008:-72.9746,0,-84.7555	1/1:90:0,90:0:0:90:3212:-289.302,-27.0927,0	0/1:52:23,29:23:816:29:1044:-78.6075,0,-58.1082	1/1:57:0,57:0:0:57:2031:-183.062,-17.1587,0	1/1:66:0,66:0:0:66:2364:-213.01,-19.868,0	0/1:56:30,26:30:1060:26:936:-67.7018,0,-78.8527	0/1:50:26,24:26:928:24:856:-62.3096,0,-68.7868	0/1:109:38,71:38:1364:71:2521:-194.328,0,-90.2484	0/1:97:50,47:50:1796:47:1672:-121.567,0,-132.712	0/1:47:30,17:30:1072:17:591:-39.3663,0,-82.6436	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:82:3,79:3:108:79:2828:-244.684,-14.6093,0	1/1:24:0,24:0:0:24:851:-76.9095,-7.22472,0	0/1:147:63,84:63:2260:84:2972:-223.458,0,-159.411	1/1:115:0,114:0:0:114:4053:-364.585,-34.3174,0	1/1:43:0,43:0:0:43:1535:-138.442,-12.9443,0	0/1:195:106,89:106:3762:89:3161:-225.995,0,-280.04	1/1:63:2,61:2:72:61:2178:-189.449,-12.1282,0	1/1:37:0,37:0:0:37:1324:-119.46,-11.1381,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:173:79,94:79:2807:94:3365:-250.906,0,-200.792	1/1:108:0,108:0:0:108:3834:-345.114,-32.5112,0	0/1:86:42,44:42:1499:44:1572:-115.883,0,-109.315	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:66:41,25:41:1459:25:888:-60.3687,0,-111.737	1/1:53:1,52:1:36:52:1872:-165.161,-12.3563,0	1/1:51:0,51:0:0:51:1827:-164.706,-15.3525,0	1/1:60:1,59:1:36:59:2089:-184.679,-14.4635,0	1/1:76:0,76:0:0:76:2719:-244.953,-22.8783,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:76:1,75:1:36:75:2663:-236.317,-19.28,0	0/1:112:61,51:61:2176:51:1823:-130.636,0,-162.367	0/1:57:38,19:38:1338:19:684:-44.7316,0,-103.514	0/1:54:26,28:26:928:28:989:-73.0664,0,-67.5826	0/1:102:51,51:51:1806:51:1828:-134.096,0,-132.098	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	1/1:99:0,99:0:0:99:3560:-320.578,-29.802,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:96:0,96:0:0:96:3393:-305.584,-28.8989,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:28:1,27:1:36:27:972:-84.1996,-4.83057,0	1/1:154:2,152:2:72:152:5460:-484.689,-39.5219,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:114:0,114:0:0:114:4084:-367.746,-34.3174,0	0/1:100:52,48:52:1855:48:1720:-124.983,0,-136.99	1/1:46:0,46:0:0:46:1620:-146.086,-13.8474,0	1/1:51:0,51:0:0:51:1813:-163.449,-15.3525,0	1/1:64:0,64:0:0:64:2273:-204.831,-19.2659,0	1/1:40:3,37:3:104:37:1328:-110.119,-2.33839,0	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	1/1:57:0,57:0:0:57:2005:-180.691,-17.1587,0	1/1:88:0,88:0:0:88:3145:-283.275,-26.4906,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:96:55,41:55:1976:41:1460:-102.797,0,-149.216	0/1:49:24,25:24:852:25:865:-63.4095,0,-62.2499	1/1:69:0,69:0:0:69:2455:-221.198,-20.7711,0	1/1:97:0,97:0:0:97:3432:-309.087,-29.1999,0	0/1:53:31,22:31:1108:22:792:-55.6511,0,-84.0764	1/1:73:2,71:2:72:71:2502:-218.59,-15.1385,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:81:43,38:43:1528:38:1368:-99.0374,0,-113.43	0/1:63:26,37:26:911:37:1328:-100.857,0,-63.3401	0/1:111:42,69:42:1512:69:2463:-188.509,0,-102.96	0/1:119:63,56:63:2252:56:2008:-145.166,0,-167.121	0/1:90:48,42:48:1720:42:1504:-108.562,0,-127.993	1/1:79:0,79:0:0:79:2824:-254.381,-23.7814,0	0/1:148:74,74:74:2614:74:2648:-194.014,0,-190.956	0/1:31:19,12:19:684:12:432:-29.8893,0,-52.5584	1/1:68:0,68:0:0:68:2420:-218.04,-20.47,0	1/1:67:0,67:0:0:67:2377:-214.187,-20.169,0	1/1:35:0,35:0:0:35:1252:-112.983,-10.5361,0	0/1:85:47,38:47:1671:38:1360:-97.113,0,-125.081	0/1:82:64,18:64:2284:18:648:-33.9674,0,-181.138	1/1:46:0,46:0:0:46:1652:-148.955,-13.8474,0	1/1:91:1,90:1:36:90:3196:-284.261,-23.7955,0
chr01	25784342	.	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chr01	25784372	.	T	A	106488	PASS	AB=0.482592;ABP=10.646;AC=151;AF=0.811828;AN=186;AO=5013;CIGAR=1X;DP=6520;DPB=6520;DPRA=0;EPP=10888.6;EPPR=3271.08;GTI=4;LEN=1;MEANALT=1.02151;MQM=59.9246;MQMR=59.9827;NS=93;NUMALT=1;ODDS=0.950907;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178943;QR=53844;RO=1505;RPL=0;RPP=10888.6;RPPR=3271.08;RPR=5013;RUN=1;SAF=5013;SAP=10888.6;SAR=0;SRF=1505;SRP=3271.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1477:-133.222,-12.6433,0	0/1:146:68,78:68:2436:78:2796:-207.93,0,-175.545	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:150:0,150:0:0:150:5341:-480.814,-45.1545,0	0/1:37:22,15:22:788:15:536:-37.4367,0,-60.1067	0/1:58:23,35:23:824:35:1253:-95.6133,0,-57.0236	0/1:100:59,41:59:2090:41:1464:-101.953,0,-158.263	1/1:107:0,107:0:0:107:3771:-339.159,-32.2102,0	1/1:139:0,139:0:0:139:4956:-446.19,-41.8432,0	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	1/1:35:0,35:0:0:35:1260:-113.704,-10.5361,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	0/1:47:20,26:20:720:26:928:-69.6273,0,-50.9216	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	0/1:74:39,35:39:1400:35:1256:-91.0691,0,-104.023	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:60:0,60:0:0:60:2152:-193.939,-18.0618,0	0/1:68:31,37:31:1095:37:1309:-97.6333,0,-78.3891	0/1:27:8,19:8:288:19:680:-53.4014,0,-18.1396	0/1:97:53,44:53:1881:44:1557:-111.22,0,-140.367	0/1:106:68,38:68:2435:38:1348:-89.7111,0,-187.494	0/1:42:28,14:28:993:14:504:-33.0548,0,-77.0383	1/1:65:0,65:0:0:65:2316:-208.701,-19.567,0	1/1:111:3,108:3:108:108:3838:-335.54,-23.3392,0	1/1:34:0,33:0:0:33:1173:-105.516,-9.93399,0	0/1:158:79,79:79:2819:79:2809:-205.484,0,-206.386	1/1:90:0,90:0:0:90:3211:-289.212,-27.0927,0	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	0/1:137:86,51:86:3092:51:1785:-119.685,0,-237.266	1/1:69:0,69:0:0:69:2465:-222.086,-20.7711,0	1/1:118:0,118:0:0:118:4216:-379.614,-35.5215,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:195:81,114:81:2912:114:4084:-309.045,0,-203.614	1/1:68:0,68:0:0:68:2402:-216.434,-20.47,0	0/1:63:28,35:28:1004:35:1248:-93.6594,0,-71.711	.:.:.:.:.:.:.:.	0/1:144:80,64:80:2851:64:2292:-163.192,0,-213.48	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:96:0,96:0:0:96:3433:-309.182,-28.8989,0	1/1:95:0,95:0:0:95:3408:-306.934,-28.5979,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:58:0,58:0:0:58:2080:-187.197,-17.4597,0	1/1:87:0,87:0:0:87:3079:-277.325,-26.1896,0	0/1:104:48,56:48:1728:56:1989:-147.975,0,-124.498	0/1:74:27,47:27:959:47:1680:-129.211,0,-64.3492	0/1:101:63,38:63:2241:38:1360:-92.2966,0,-171.548	0/1:78:34,44:34:1220:44:1572:-118.28,0,-86.6265	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:95:0,95:0:0:95:3393:-305.584,-28.5979,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:63:0,63:0:0:63:2214:-199.521,-18.9649,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:6:0,6:0:0:6:205:-18.217,-1.80618,0	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	1/1:65:0,65:0:0:65:2312:-208.34,-19.567,0	1/1:101:0,101:0:0:101:3625:-326.455,-30.404,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0	0/1:130:86,44:86:3080:44:1565:-102.006,0,-238.294	1/1:52:0,52:0:0:52:1849:-166.678,-15.6536,0	1/1:38:0,38:0:0:38:1327:-119.724,-11.4391,0	1/1:113:0,113:0:0:113:4052:-364.838,-34.0164,0	1/1:79:0,79:0:0:79:2826:-254.571,-23.7814,0	1/1:28:0,28:0:0:28:1000:-90.3016,-8.42884,0	1/1:59:0,59:0:0:59:2100:-189.264,-17.7608,0	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:32:19,13:19:671:13:453:-31.4667,0,-51.0828	0/1:59:27,32:27:947:32:1148:-85.8691,0,-67.783	1/1:135:0,135:0:0:135:4810:-433.054,-40.6391,0	1/1:93:0,93:0:0:93:3320:-299.011,-27.9958,0	0/1:59:25,34:25:900:34:1212:-91.6256,0,-63.5602	1/1:83:0,83:0:0:83:2964:-266.994,-24.9855,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:84:49,35:49:1760:35:1245:-87.058,0,-133.397	0/1:66:41,25:41:1472:25:896:-61.0924,0,-112.908	0/1:135:65,70:65:2340:70:2489:-183.586,0,-170.22	0/1:93:40,53:40:1440:53:1892:-142.562,0,-101.902	0/1:44:24,20:24:864:20:716:-51.5142,0,-64.8372	1/1:119:1,118:1:36:118:4210:-375.48,-32.2243,0	0/1:160:76,84:76:2728:84:3020:-223.865,0,-197.561	0/1:33:16,17:16:576:17:612:-45.4794,0,-42.241	1/1:78:0,78:0:0:78:2792:-251.476,-23.4803,0	1/1:50:1,49:1:36:49:1760:-155.086,-11.4532,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:41:22,19:22:792:19:680:-49.1869,0,-59.2634	0/1:79:52,27:52:1850:27:968:-63.656,0,-142.997	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:106:0,106:0:0:106:3807:-342.827,-31.9092,0
chr01	25784379	.	C	T	36212.8	PASS	AB=0.510275;ABP=6.17858;AC=35;AF=0.188172;AN=186;AO=1769;CIGAR=1X;DP=7331;DPB=7331;DPRA=1.60262;EPP=1875.25;EPPR=7599.17;GTI=4;LEN=1;MEANALT=1.05128;MQM=59.9808;MQMR=59.865;NS=93;NUMALT=1;ODDS=0.0852702;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63112;QR=198623;RO=5557;RPL=4;RPP=3809.68;RPPR=11983.2;RPR=1765;RUN=1;SAF=1506;SAP=1899.58;SAR=263;SRF=4993;SRP=7668.24;SRR=564;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:147:79,68:79:2805:68:2440:-175.604,0,-208.438	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:146:146,0:146:5188:0:0:0,-43.9504,-467.051	0/1:40:16,24:16:567:24:860:-65.6806,0,-39.3195	0/1:57:35,22:35:1256:22:792:-54.447,0,-96.1784	0/1:100:41,59:41:1458:59:2088:-158.085,0,-101.412	0/0:107:107,0:107:3824:0:0:0,-32.2102,-343.922	0/0:137:136,1:136:4868:1:36:0,-37.6428,-434.675	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.106	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.142	0/1:47:27,20:27:972:20:720:-50.9804,0,-73.6461	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/1:73:34,39:34:1216:39:1400:-104.324,0,-87.7714	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.945	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.458	0/1:67:37,30:37:1332:30:1076:-76.9838,0,-100.007	0/1:27:19,8:19:676:8:288:-18.1396,0,-53.0402	0/1:97:43,53:43:1548:53:1900:-142.098,0,-110.432	0/1:108:40,68:40:1428:68:2431:-186.529,0,-96.3063	0/1:106:31,75:31:1112:75:2656:-207.378,0,-68.4822	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:111:108,3:108:3844:3:108:0,-23.3392,-336.08	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.575	0/1:230:122,108:122:4363:108:3815:-274.312,0,-323.446	0/0:89:89,0:89:3178:0:0:0,-26.7917,-286.242	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:277:121,155:121:4324:155:5504:-412.048,0,-305.786	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.608	0/0:116:116,0:116:4143:0:0:0,-34.9195,-373.051	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:385:222,163:222:7927:163:5800:-406.222,0,-596.496	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:62:34,28:34:1211:28:999:-71.5606,0,-90.6317	.:.:.:.:.:.:.:.	0/1:143:63,80:63:2259:80:2868:-215.31,0,-160.523	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:94:94,0:94:3354:0:0:0,-28.2968,-302.072	0/0:96:95,0:95:3400:0:0:0,-28.5978,-305.944	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:127:126,0:126:4516:0:0:0,-37.9298,-405.941	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.481	0/1:104:55,49:55:1955:49:1752:-126.657,0,-144.918	0/1:75:48,27:48:1724:27:959:-64.0481,0,-132.868	0/1:100:37,63:37:1324:63:2251:-172.75,0,-89.3591	0/1:156:85,71:85:3039:71:2516:-179.733,0,-226.751	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:95:95,0:95:3399:0:0:0,-28.5978,-306.124	0/0:112:111,1:111:3972:1:36:0,-30.1171,-353.812	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.537	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:21:21,0:21:748:0:0:0,-6.32163,-66.1896	0/1:27:17,10:17:612:10:356:-24.2534,0,-47.268	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:100:100,0:100:3571:0:0:0,-30.103,-321.598	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:107:107,0:107:3835:0:0:0,-32.2102,-345.33	0/1:129:44,85:44:1580:85:3037:-234.726,0,-103.659	0/0:50:50,0:50:1758:0:0:0,-15.0515,-158.432	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.699	0/0:111:111,0:111:3960:0:0:0,-33.4143,-356.593	0/0:79:79,0:79:2807:0:0:0,-23.7814,-252.867	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0713	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.222	0/0:152:152,0:152:5414:0:0:0,-45.7566,-487.325	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	0/1:57:31,26:31:1108:26:932:-67.0402,0,-82.8723	0/0:134:134,0:134:4791:0:0:0,-40.338,-431.215	0/0:92:91,0:91:3264:0:0:0,-27.3937,-293.699	0/1:59:33,26:33:1188:26:932:-66.4381,0,-89.4678	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/1:86:36,50:36:1283:50:1800:-136.385,0,-89.883	0/1:67:27,40:27:964:40:1417:-107.656,0,-66.9078	0/1:136:70,66:70:2512:66:2368:-172.438,0,-185.389	0/1:89:51,38:51:1836:38:1359:-95.8182,0,-138.729	0/1:46:21,25:21:752:25:892:-66.7523,0,-54.1507	0/0:118:117,1:117:4192:1:36:0,-31.9233,-373.863	0/1:168:90,78:90:3213:78:2791:-200.771,0,-238.712	0/1:31:17,14:17:608:14:500:-36.0042,0,-45.7201	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.757	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:41:19,22:19:675:22:792:-59.2634,0,-48.7347	0/1:78:28,50:28:1004:50:1781:-137.091,0,-67.1955	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557
chr01	25784381	.	G	C	244513	PASS	AB=0.500899;ABP=3.04544;AC=153;AF=0.81383;AN=188;AO=8987;CIGAR=1X;DP=11508;DPB=11508;DPRA=0;EPP=236.489;EPPR=181.043;GTI=4;LEN=1;MEANALT=1.07447;MQM=59.7494;MQMR=59.9773;NS=94;NUMALT=1;ODDS=0.664828;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=319629;QR=89283;RO=2514;RPL=22;RPP=19327.4;RPPR=5410.1;RPR=8965;RUN=1;SAF=5007;SAP=257.858;SAR=3980;SRF=1490;SRP=190.579;SRR=1024;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/1:142:67,75:67:2384:75:2671:-197.889,0,-172.069	1/1:95:0,95:0:0:95:3388:-305.136,-28.5979,0	1/1:250:0,250:0:0:250:8890:-800.017,-75.2575,0	0/1:81:35,46:35:1256:46:1652:-124.573,0,-88.9619	0/1:55:22,33:22:792:33:1184:-90.3117,0,-55.049	0/1:172:92,80:92:3284:80:2863:-206.13,0,-244.003	1/1:108:0,108:0:0:108:3830:-344.462,-32.5112,0	1/1:141:0,141:0:0:141:5035:-453.297,-42.4452,0	1/1:145:0,145:0:0:145:5178:-465.116,-43.6494,0	1/1:129:0,129:0:0:129:4605:-414.112,-38.8329,0	1/1:83:0,83:0:0:83:2984:-268.791,-24.9855,0	0/1:48:21,27:21:756:27:968:-72.9846,0,-53.9178	1/1:152:0,152:0:0:152:5419:-487.809,-45.7566,0	0/1:151:80,71:80:2840:71:2532:-182.663,0,-210.381	1/1:153:0,152:0:0:152:5428:-488.281,-45.7566,0	1/1:60:0,60:0:0:60:2129:-191.876,-18.0618,0	0/1:65:28,37:28:1004:37:1311:-98.7177,0,-71.1089	0/1:27:8,19:8:288:19:680:-53.4014,0,-18.1396	0/1:227:108,119:108:3836:119:4244:-313.738,0,-277.103	0/1:171:96,75:96:3419:75:2688:-190.648,0,-256.447	0/1:109:79,30:79:2798:30:1063:-63.1686,0,-219.247	1/1:142:1,141:1:36:141:5003:-446.578,-39.148,0	1/1:155:7,148:7:252:148:5236:-448.339,-23.6307,0	1/1:108:0,108:0:0:108:3856:-347.226,-32.5112,0	0/1:230:108,122:108:3856:122:4318:-319.404,0,-278	1/1:253:0,253:0:0:253:8988:-808.85,-76.1606,0	1/1:77:0,77:0:0:77:2752:-247.897,-23.1793,0	0/1:286:158,128:158:5636:128:4537:-321.28,0,-421.266	1/1:116:0,116:0:0:116:4146:-373.065,-34.9195,0	1/1:221:0,220:0:0:220:7814:-702.958,-66.2266,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:35:0,35:0:0:35:1248:-112.604,-10.5361,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:402:179,223:179:6290:223:7907:-590.608,0,-445.185	1/1:138:0,138:0:0:138:4918:-442.726,-41.5421,0	0/1:60:27,33:27:972:33:1164:-87.0024,0,-69.7361	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:244:109,135:109:3896:135:4811:-359.684,0,-277.383	1/1:82:0,82:0:0:82:2942:-265.006,-24.6845,0	1/1:190:1,189:1:36:189:6748:-603.686,-53.5974,0	1/1:150:0,150:0:0:150:5325:-479.382,-45.1545,0	1/1:131:0,131:0:0:131:4672:-419.899,-39.4349,0	1/1:128:0,128:0:0:128:4500:-405.125,-38.5318,0	1/1:88:0,88:0:0:88:3130:-281.848,-26.4906,0	0/1:176:86,90:86:3033:90:3191:-234.429,0,-220.217	0/1:110:44,66:44:1564:66:2363:-179.814,0,-107.938	0/1:164:81,83:81:2879:83:2951:-216.421,0,-209.978	0/1:162:78,83:78:2760:83:2959:-217.69,0,-199.817	1/1:13:1,12:1:36:12:419:-34.4074,-0.315115,0	1/1:92:0,92:0:0:92:3247:-292.451,-27.6948,0	1/1:113:1,112:1:32:112:3995:-356.149,-30.8171,0	1/1:13:0,13:0:0:13:459:-41.6441,-3.91339,0	1/1:208:0,208:0:0:208:7412:-667.082,-62.6142,0	1/1:54:0,54:0:0:54:1915:-172.579,-16.2556,0	1/1:20:0,20:0:0:20:700:-62.7622,-6.0206,0	0/1:27:10,17:10:356:17:612:-47.268,0,-24.2534	1/1:137:2,135:2:72:135:4780:-423.503,-34.4044,0	1/1:210:2,208:2:72:208:7390:-658.302,-56.3796,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:105:0,105:0:0:105:3760:-338.598,-31.6082,0	0/1:205:122,83:122:4312:83:2939:-203.03,0,-326.546	1/1:75:0,75:0:0:75:2659:-239.516,-22.5773,0	1/1:76:0,76:0:0:76:2709:-243.984,-22.8783,0	1/1:184:1,183:1:27:183:6463:-578.971,-52.6897,0	1/1:185:1,184:1:36:184:6547:-585.67,-52.0923,0	1/1:130:0,130:0:0:130:4620:-415.899,-39.1339,0	1/1:59:0,59:0:0:59:2097:-188.995,-17.7608,0	1/1:149:0,149:0:0:149:5277:-475.008,-44.8535,0	1/1:45:0,45:0:0:45:1607:-144.906,-13.5464,0	0/1:31:18,13:18:644:13:464:-32.7656,0,-48.9587	0/1:58:26,32:26:936:32:1140:-85.4495,0,-67.0997	1/1:235:0,235:0:0:235:8352:-751.623,-70.7421,0	1/1:196:0,196:0:0:196:6929:-623.577,-59.0019,0	0/1:57:25,32:25:900:32:1121:-84.0368,0,-64.1623	1/1:83:0,83:0:0:83:2932:-264.116,-24.9855,0	1/1:13:0,13:0:0:13:455:-41.282,-3.91339,0	0/1:176:86,89:86:3071:89:3192:-234.439,0,-223.57	0/1:69:42,27:42:1485:27:959:-65.8543,0,-113.171	0/1:317:146,171:146:5115:171:6104:-453.905,0,-365.073	0/1:160:69,90:69:2444:90:3211:-240.951,0,-171.99	0/1:125:64,61:64:2280:61:2133:-154.592,0,-167.747	1/1:174:1,172:1:36:172:6102:-545.665,-48.8397,0	0/1:302:157,144:157:5560:144:5117:-369.559,0,-409.473	0/1:32:15,17:15:532:17:604:-45.0576,0,-38.5801	1/1:78:1,77:1:36:77:2751:-244.233,-19.8821,0	1/1:51:1,50:1:36:50:1765:-155.533,-11.7543,0	1/1:107:0,107:0:0:107:3812:-343.267,-32.2102,0	0/1:204:101,103:101:3600:103:3672:-269.258,0,-262.798	0/1:151:102,49:102:3618:49:1748:-112.121,0,-280.372	1/1:84:0,84:0:0:84:2965:-267.068,-25.2865,0	1/1:217:0,217:0:0:217:7733:-695.957,-65.3235,0
chr01	25784429	.	AGCG	GGCA,GGCG	153393	PASS	AB=0.516075,0.481246;ABP=9.71234,12.1325;AC=153,35;AF=0.81383,0.18617;AN=188;AO=5700,1447;CIGAR=1X2M1X,1X3M;DP=7171;DPB=7171;DPRA=0,1.27656;EPP=12380.4,3145.13;EPPR=11.6962;GTI=1;LEN=4,1;MEANALT=1.64894,2.21951;MQM=59.3946,59.9046;MQMR=60;NS=94;NUMALT=2;ODDS=0.943203;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=201534,51525;QR=136;RO=4;RPL=5700,1447;RPP=12380.4,3145.13;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12380.4,3145.13;SAR=5700,1447;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36,0:0:0:36,0:1279,0:-115.394,-10.8371,0,-115.394,-10.8371,-115.394	1/2:54:0,24,30:0:0:24,30:864,1080:-158.98,-88.4823,-81.2576,-70.8578,0,-61.8269	1/1:207:0,205,0:0:0:205,0:7267,0:-653.334,-61.7112,0,-653.334,-61.7112,-653.334	1/1:110:0,109,0:0:0:109,0:3859,0:-347.149,-32.8123,0,-347.149,-32.8123,-347.149	1/2:46:0,32,14:0:0:32,14:1135,500:-133.579,-41.1218,-31.4888,-92.8131,0,-88.5987	1/2:28:0,23,5:0:0:23,5:792,171:-78.5073,-14.2203,-7.29661,-64.6292,0,-63.124	1/2:77:1,40,36:1:36:40,36:1415,1284:-216.679,-101.729,-92.6254,-112.308,0,-104.409	1/1:105:0,104,0:0:0:104,0:3693,0:-331.748,-31.3071,0,-331.748,-31.3071,-331.748	1/1:57:0,57,0:0:0:57,0:2015,0:-181.596,-17.1587,0,-181.596,-17.1587,-181.596	1/1:49:0,49,0:0:0:49,0:1740,0:-155.97,-14.7505,0,-155.97,-14.7505,-155.97	1/1:96:0,96,0:0:0:96,0:3379,0:-303.759,-28.8989,0,-303.759,-28.8989,-303.759	1/1:113:2,111,0:2:70:111,0:3932,0:-347.269,-27.369,0,-347.871,-33.4143,-353.566	1/2:74:0,32,41:0:0:32,41:1120,1443:-208.576,-117.463,-107.83,-91.1038,0,-78.7616	1/1:89:0,88,0:0:0:88,0:3130,0:-281.539,-26.4906,0,-281.539,-26.4906,-281.539	1/2:80:0,35,45:0:0:35,45:1246,1616:-233.592,-132.054,-121.518,-101.895,0,-88.3485	1/1:102:0,102,0:0:0:102,0:3617,0:-325.651,-30.7051,0,-325.651,-30.7051,-325.651	1/1:46:0,46,0:0:0:46,0:1615,0:-145.613,-13.8474,0,-145.613,-13.8474,-145.613	1/2:34:0,12,22:0:0:12,22:432,772:-98.4285,-63.1763,-59.5639,-35.6088,0,-28.9862	1/2:112:1,68,43:1:30:68,43:2373,1534:-315.133,-122.439,-104.366,-190.65,0,-180.103	1/2:137:0,76,61:0:0:76,61:2715,2173:-398.778,-177.473,-154.595,-221.661,0,-203.298	1/2:67:0,34,32:0:0:34,32:1205,1148:-191.804,-93.6758,-83.4407,-98.1629,0,-88.53	1/2:71:0,18,53:0:0:18,53:639,1899:-207.297,-155.232,-149.814,-52.4202,0,-36.4656	1/1:82:0,80,1:0:0:80,1:2812,36:-252.812,-24.0824,0,-249.875,-21.145,-249.574	1/1:47:0,43,4:0:0:43,4:1517,144:-136.08,-12.9443,0,-124.33,-0.834793,-123.126	1/1:82:0,81,0:0:0:81,0:2861,0:-257.285,-24.3834,0,-257.285,-24.3834,-257.285	1/2:76:0,44,32:0:0:44,32:1552,1144:-219.955,-93.6366,-80.3912,-126.673,0,-117.04	1/1:170:0,170,0:0:0:170,0:6014,0:-540.863,-51.1751,0,-540.863,-51.1751,-540.863	1/1:47:0,47,0:0:0:47,0:1643,0:-148.123,-14.1484,0,-148.123,-14.1484,-148.123	1/2:152:0,77,73:0:0:77,73:2725,2595:-432.896,-211.464,-188.285,-221.427,0,-199.451	1/1:51:0,51,0:0:0:51,0:1798,0:-161.852,-15.3525,0,-161.852,-15.3525,-161.852	1/1:107:0,106,0:0:0:106,0:3766,0:-338.767,-31.9092,0,-338.767,-31.9092,-338.767	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:28:0,28,0:0:0:28,0:987,0:-89.1309,-8.42884,0,-89.1309,-8.42884,-89.1309	1/2:5:0,2,3:0:0:2,3:72,104:-14.6799,-8.79971,-8.19765,-6.23466,0,-5.33157	1/1:14:0,14,0:0:0:14,0:497,0:-45.0653,-4.21442,0,-45.0653,-4.21442,-45.0653	1/1:37:0,37,0:0:0:37,0:1298,0:-117.116,-11.1381,0,-117.116,-11.1381,-117.116	1/2:219:0,115,103:0:0:115,103:4083,3675:-631.747,-299.594,-264.976,-332.188,0,-301.182	1/1:72:0,72,0:0:0:72,0:2547,0:-229.446,-21.6742,0,-229.446,-21.6742,-229.446	1/2:85:0,43,42:0:0:43,42:1530,1486:-246.058,-121.386,-108.442,-125.026,0,-112.383	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:102:0,72,30:0:0:72,30:2567,1076:-297.329,-88.122,-66.4478,-209.565,0,-200.534	1/1:40:0,40,0:0:0:40,0:1422,0:-128.268,-12.0412,0,-128.268,-12.0412,-128.268	1/1:106:0,104,0:0:0:104,0:3649,0:-328.205,-31.3071,0,-328.205,-31.3071,-328.205	1/1:59:0,58,0:0:0:58,0:2060,0:-185.305,-17.4597,0,-185.305,-17.4597,-185.305	1/1:63:0,63,0:0:0:63,0:2223,0:-200.028,-18.9649,0,-200.028,-18.9649,-200.028	1/1:72:0,72,0:0:0:72,0:2520,0:-226.916,-21.6742,0,-226.916,-21.6742,-226.916	1/1:89:0,89,0:0:0:89,0:3163,0:-284.816,-26.7917,0,-284.816,-26.7917,-284.816	1/2:75:0,35,40:0:0:35,40:1228,1409:-214.783,-115.064,-104.528,-100.07,0,-88.0283	1/2:37:0,20,17:0:0:20,17:709,612:-108.054,-50.2959,-44.2753,-58.1151,0,-52.9976	1/2:65:0,43,22:0:0:43,22:1528,775:-187.938,-63.4485,-50.5042,-124.843,0,-118.22	1/2:87:0,42,45:0:0:42,45:1479,1601:-251.238,-130.832,-118.188,-120.76,0,-107.213	1/1:12:0,12,0:0:0:12,0:420,0:-38.1089,-3.61236,0,-38.1089,-3.61236,-38.1089	1/1:132:0,130,1:0:0:130,1:4613,36:-414.942,-39.1339,0,-412.005,-36.1965,-411.704	1/1:100:0,100,0:0:0:100,0:3521,0:-316.958,-30.103,0,-316.958,-30.103,-316.958	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:153:0,153,0:0:0:153,0:5389,0:-484.477,-46.0576,0,-484.477,-46.0576,-484.477	1/1:33:0,33,0:0:0:33,0:1175,0:-106.006,-9.93399,0,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chr01	25809525	.	G	A	172888	PASS	AB=0.493414;ABP=4.38326;AC=150;AF=0.806452;AN=186;AO=6468;CIGAR=1X;DP=8325;DPB=8325;DPRA=0;EPP=96.6052;EPPR=21.3207;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.7002;MQMR=59.9763;NS=93;NUMALT=1;ODDS=0.890749;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226859;QR=65475;RO=1853;RPL=5;RPP=14004.7;RPPR=4009.4;RPR=6463;RUN=1;SAF=2975;SAP=93.0935;SAR=3493;SRF=866;SRP=20.1676;SRR=987;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1009:-91.1108,-8.72987,0	0/1:95:49,46:49:1752:46:1580:-113.862,0,-129.366	1/1:97:0,97:0:0:97:3437:-309.481,-29.1999,0	1/1:111:0,111:0:0:111:3871:-348.452,-33.4143,0	0/1:67:37,30:37:1286:30:1037:-73.0138,0,-95.8702	0/1:35:21,14:21:733:14:474:-32.4413,0,-55.7536	0/1:105:44,60:44:1541:60:2103:-157.936,0,-107.469	1/1:86:0,86:0:0:86:3019:-271.924,-25.8886,0	1/1:75:0,75:0:0:75:2600:-234.237,-22.5773,0	1/1:61:1,60:1:36:60:2106:-186.206,-14.7646,0	1/1:122:0,122:0:0:122:4318:-388.62,-36.7257,0	1/1:177:0,177:0:0:177:6218:-559.611,-53.2823,0	0/1:131:70,61:70:2479:61:2151:-154.419,0,-183.926	1/1:120:0,120:0:0:120:4201:-378.052,-36.1236,0	0/1:105:55,50:55:1916:50:1721:-123.553,0,-141.107	1/1:80:0,80:0:0:80:2805:-252.67,-24.0824,0	1/1:131:0,130:0:0:130:4536:-408.162,-39.1339,0	0/1:89:42,47:42:1482:47:1642:-121.256,0,-106.85	0/1:86:31,55:31:1100:55:1934:-148.429,0,-73.4217	0/1:125:75,50:75:2614:50:1761:-121.143,0,-197.876	0/1:121:59,62:59:2081:62:2156:-157.877,0,-151.134	0/1:29:23,6:23:815:6:208:-10.3292,0,-64.9409	1/1:68:0,68:0:0:68:2390:-215.303,-20.47,0	1/1:80:2,78:2:68:78:2784:-244.311,-17.6247,0	1/1:28:0,28:0:0:28:965:-87.1191,-8.42884,0	0/1:126:69,57:69:2459:57:1997:-142.068,0,-183.634	1/1:170:1,169:1:36:169:5914:-528.054,-47.5768,0	1/1:85:0,85:0:0:85:3010:-271.076,-25.5876,0	0/1:158:76,82:76:2683:82:2872:-211.148,0,-194.151	1/1:61:0,61:0:0:61:2073:-186.82,-18.3628,0	1/1:76:0,76:0:0:76:2684:-241.792,-22.8783,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:351:158,193:158:5573:193:6774:-504.077,0,-396.029	1/1:64:0,64:0:0:64:2238:-201.622,-19.2659,0	0/1:107:48,59:48:1708:59:2112:-158.084,0,-121.796	0/1:3:1,2:1:36:2:64:-5.1756,0,-2.69518	0/1:89:45,44:45:1605:44:1549:-112.872,0,-117.946	1/1:88:0,88:0:0:88:3123:-281.298,-26.4906,0	1/1:91:0,91:0:0:91:3190:-287.136,-27.3937,0	1/1:152:0,152:0:0:152:5381:-484.298,-45.7566,0	1/1:116:0,116:0:0:116:3999:-358.831,-34.9195,0	1/1:45:0,45:0:0:45:1579:-142.338,-13.5464,0	1/1:88:0,88:0:0:88:3124:-281.369,-26.4906,0	0/1:73:36,37:36:1279:37:1237:-89.6399,0,-93.4187	0/1:53:32,21:32:1144:21:740:-50.9688,0,-87.3149	0/1:98:53,45:53:1887:45:1580:-112.987,0,-140.607	0/1:101:44,56:44:1535:56:1967:-146.797,0,-107.976	1/1:6:0,6:0:0:6:212:-19.4224,-1.80618,0	1/1:93:0,93:0:0:93:3228:-290.708,-27.9958,0	1/1:18:0,18:0:0:18:635:-57.4768,-5.41854,0	1/1:8:0,8:0:0:8:269:-24.5361,-2.40824,0	1/1:100:1,99:1:32:99:3473:-309.539,-26.9037,0	1/1:34:0,34:0:0:34:1157:-104.428,-10.235,0	.:.:.:.:.:.:.:.	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:65:0,64:0:0:64:2254:-202.761,-19.2659,0	1/1:195:0,195:0:0:195:6812:-612.525,-58.7009,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:76:0,76:0:0:76:2636:-236.783,-22.8783,0	0/1:99:44,55:44:1559:55:1888:-140.386,0,-110.799	1/1:39:0,39:0:0:39:1367:-123.326,-11.7402,0	1/1:53:0,53:0:0:53:1841:-165.961,-15.9546,0	1/1:100:0,100:0:0:100:3419:-307.906,-30.103,0	1/1:60:0,60:0:0:60:2128:-191.789,-18.0618,0	1/1:54:0,54:0:0:54:1896:-170.899,-16.2556,0	1/1:55:0,55:0:0:55:1960:-175.704,-16.5567,0	1/1:197:0,197:0:0:197:6944:-625.029,-59.3029,0	1/1:13:0,13:0:0:13:441:-39.9955,-3.91339,0	0/1:48:20,28:20:712:28:996:-75.5054,0,-49.9572	0/1:78:39,39:39:1382:39:1380:-101.018,0,-101.197	1/1:143:0,143:0:0:143:4985:-448.743,-43.0473,0	1/1:91:1,90:1:36:90:3132:-278.504,-23.7955,0	0/1:96:47,49:47:1659:49:1712:-125.461,0,-120.698	1/1:79:1,78:1:36:78:2634:-233.685,-20.1831,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:78:45,33:45:1581:33:1169:-82.0335,0,-119.098	0/1:97:51,46:51:1785:46:1644:-119.049,0,-131.731	0/1:125:72,53:72:2540:53:1892:-132.927,0,-191.221	0/1:168:98,70:98:3471:70:2468:-171.681,0,-262.031	0/1:117:60,57:60:2123:57:2040:-148.649,0,-156.118	1/1:170:1,169:1:36:169:5953:-532.27,-47.5768,0	0/1:245:109,136:109:3878:136:4834:-361.453,0,-275.463	0/1:71:34,37:34:1196:37:1328:-98.4328,0,-86.5695	1/1:164:0,164:0:0:164:5830:-524.781,-49.3689,0	1/1:150:1,149:1:36:149:5245:-467.596,-41.5562,0	1/1:78:0,78:0:0:78:2728:-245.753,-23.4803,0	0/1:145:65,80:65:2274:80:2799:-208.428,0,-161.271	0/1:118:86,32:86:3075:32:1127:-66.215,0,-241.456	1/1:81:0,81:0:0:81:2807:-252.857,-24.3834,0	1/1:223:0,223:0:0:223:7922:-712.865,-67.1297,0
chr01	25809543	.	G	C	185761	PASS	AB=0.502367;ABP=3.19535;AC=150;AF=0.806452;AN=186;AO=6842;CIGAR=1X;DP=8742;DPB=8742;DPRA=0;EPP=14860.2;EPPR=4122.29;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.6592;MQMR=59.9958;NS=93;NUMALT=1;ODDS=1.06752;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242845;QR=67506;RO=1897;RPL=3292;RPP=24.136;RPPR=35.7037;RPR=3550;RUN=1;SAF=3292;SAP=24.136;SAR=3550;SRF=864;SRP=35.7037;SRR=1033;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1063:-95.9653,-9.33193,0	0/1:104:53,51:53:1887:51:1812:-131.813,0,-138.801	1/1:111:0,111:0:0:111:3952:-355.83,-33.4143,0	1/1:117:0,117:0:0:117:4160:-374.471,-35.2205,0	0/1:65:35,30:35:1252:30:1051:-75.1331,0,-93.4181	0/1:38:22,16:22:788:16:572:-40.3637,0,-59.8057	0/1:105:44,61:44:1580:61:2121:-159.544,0,-110.883	1/1:95:0,95:0:0:95:3363:-302.802,-28.5979,0	1/1:82:0,82:0:0:82:2905:-261.45,-24.6845,0	1/1:66:1,65:1:36:65:2295:-203.208,-16.2697,0	1/1:133:0,133:0:0:133:4724:-425.134,-40.037,0	1/1:191:0,191:0:0:191:6776:-609.754,-57.4967,0	0/1:137:70,67:70:2482:67:2327:-168.441,0,-182.392	1/1:131:0,131:0:0:131:4629:-416.131,-39.4349,0	0/1:109:56,53:56:2004:53:1876:-136.296,0,-147.821	1/1:85:0,85:0:0:85:2987:-269.03,-25.5876,0	1/1:145:0,145:0:0:145:5160:-464.496,-43.6494,0	0/1:88:39,49:39:1404:49:1718:-128.357,0,-100.169	0/1:92:31,61:31:1112:61:2139:-164.948,0,-72.6966	0/1:127:76,51:76:2679:51:1836:-127.261,0,-203.123	0/1:129:59,70:59:2093:70:2459:-182.702,0,-149.805	0/1:29:23,6:23:828:6:216:-11.0606,0,-66.1142	1/1:70:0,70:0:0:70:2492:-224.485,-21.0721,0	1/1:84:3,81:3:108:81:2882:-249.508,-15.2114,0	1/1:29:0,29:0:0:29:1029:-92.8912,-8.72987,0	0/1:132:72,60:72:2584:60:2133:-152.5,0,-193.073	1/1:174:1,173:1:36:173:6149:-549.371,-48.7809,0	1/1:92:0,92:0:0:92:3274:-294.82,-27.6948,0	0/1:162:76,86:76:2728:86:3074:-228.118,0,-196.996	1/1:66:0,66:0:0:66:2372:-213.603,-19.868,0	1/1:82:0,82:0:0:82:2910:-262.128,-24.6845,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:370:164,206:164:5810:206:7314:-546.928,0,-411.625	1/1:68:0,68:0:0:68:2411:-217.214,-20.47,0	0/1:113:50,63:50:1775:63:2258:-169.415,0,-126.016	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:92:48,43:48:1700:43:1512:-108.602,0,-125.53	1/1:87:0,87:0:0:87:3108:-279.948,-26.1896,0	1/1:95:0,95:0:0:95:3378:-303.846,-28.5979,0	1/1:154:0,154:0:0:154:5458:-491.172,-46.3586,0	1/1:129:0,129:0:0:129:4563:-410.517,-38.8329,0	1/1:48:0,48:0:0:48:1711:-154.216,-14.4494,0	1/1:94:0,94:0:0:94:3356:-302.241,-28.2968,0	0/1:79:37,42:37:1320:42:1488:-110.384,0,-95.3206	0/1:54:32,22:32:1133:22:788:-54.9883,0,-86.021	0/1:97:51,46:51:1828:46:1656:-120.128,0,-135.601	0/1:106:47,59:47:1688:59:2108:-158.035,0,-120.298	1/1:7:0,7:0:0:7:243:-22.2051,-2.10721,0	1/1:94:0,94:0:0:94:3349:-301.593,-28.2968,0	1/1:20:0,20:0:0:20:712:-64.4057,-6.0206,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:106:0,106:0:0:106:3751:-337.757,-31.9092,0	1/1:41:0,41:0:0:41:1463:-131.965,-12.3422,0	.:.:.:.:.:.:.:.	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	1/1:69:0,69:0:0:69:2466:-222.163,-20.7711,0	1/1:205:0,205:0:0:205:7238:-651.354,-61.7112,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:84:0,84:0:0:84:2954:-266.044,-25.2865,0	0/1:100:43,57:43:1527:57:2052:-154.841,0,-107.619	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:50:0,50:0:0:50:1781:-160.566,-15.0515,0	1/1:108:0,107:0:0:107:3826:-344.177,-32.2102,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:56:0,56:0:0:56:1997:-179.973,-16.8577,0	1/1:60:0,60:0:0:60:2112:-190.182,-18.0618,0	1/1:205:0,205:0:0:205:7283:-655.519,-61.7112,0	1/1:12:0,12:0:0:12:432:-39.2035,-3.61236,0	0/1:50:20,30:20:707:30:1076:-82.1014,0,-48.9031	0/1:84:43,41:43:1536:41:1459:-106.319,0,-113.247	1/1:145:0,145:0:0:145:5153:-463.162,-43.6494,0	1/1:93:0,93:0:0:93:3318:-298.831,-27.9958,0	0/1:98:47,51:47:1676:51:1836:-136.02,0,-121.626	1/1:79:1,78:1:36:78:2780:-246.825,-20.1831,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:84:47,37:47:1652:37:1320:-93.7861,0,-123.678	0/1:102:55,47:55:1939:47:1677:-120.507,0,-144.078	0/1:127:74,53:74:2613:53:1876:-130.883,0,-197.187	0/1:181:105,76:105:3728:76:2692:-187.918,0,-281.235	0/1:123:64,59:64:2277:59:2112:-153.32,0,-168.164	1/1:179:0,179:0:0:179:6353:-571.846,-53.8844,0	0/1:260:111,149:111:3966:149:5291:-398.025,0,-278.863	0/1:78:38,40:38:1345:40:1401:-102.882,0,-97.8678	1/1:166:0,166:0:0:166:5877:-529.018,-49.971,0	1/1:150:0,149:0:0:149:5286:-474.538,-44.8535,0	1/1:84:0,84:0:0:84:2985:-268.852,-25.2865,0	0/1:147:65,82:65:2309:82:2879:-215.039,0,-163.818	0/1:123:86,37:86:3056:37:1320:-82.0682,0,-238.242	1/1:86:0,86:0:0:86:3025:-272.417,-25.8886,0	1/1:232:0,232:0:0:232:8214:-739.139,-69.839,0
chr01	25940640	.	CG	TG	132007	PASS	AB=0.516412;ABP=11.2784;AC=149;AF=0.792553;AN=188;AO=6219;CIGAR=1X1M;DP=7962;DPB=7962;DPRA=85.6022;EPP=13507.4;EPPR=3716.23;GTI=2;LEN=1;MEANALT=1.31183;MQM=59.9907;MQMR=59.9953;NS=94;NUMALT=1;ODDS=0.907295;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221558;QR=58899;RO=1710;RPL=2;RPP=13490;RPPR=3716.23;RPR=6217;RUN=1;SAF=2;SAP=13490;SAR=6217;SRF=0;SRP=3716.23;SRR=1710;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1837:-165.585,-15.6536,0	0/1:50:21,29:21:741:29:1040:-78.8629,0,-51.9606	1/1:176:0,176:0:0:176:6275:-564.844,-52.9813,0	1/1:232:0,230:0:0:230:8165:-734.618,-69.2369,0	0/1:37:16,21:16:538:21:756:-57.2291,0,-37.5975	0/1:36:19,17:19:652:17:599:-43.401,0,-48.1625	0/1:98:43,55:43:1465:55:1968:-147.894,0,-102.636	1/1:89:0,89:0:0:89:3136:-282.464,-26.7917,0	1/1:121:0,121:0:0:121:4326:-389.516,-36.4246,0	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:42:0,41:0:0:41:1472:-132.416,-12.3422,0	1/1:110:0,110:0:0:110:3896:-350.834,-33.1133,0	0/1:91:51,40:51:1743:40:1436:-102.144,0,-129.755	0/1:56:27,29:27:930:29:1031:-76.2449,0,-67.1517	0/1:78:44,34:44:1527:34:1211:-85.8152,0,-114.239	1/1:54:0,54:0:0:54:1892:-170.556,-16.2556,0	1/1:15:0,15:0:0:15:523:-47.3985,-4.51545,0	0/1:35:23,12:23:769:12:432:-28.6851,0,-58.9812	0/1:24:14,10:14:491:10:352:-24.7935,0,-37.2971	0/1:154:67,87:67:2350:87:3103:-233.138,0,-165.399	0/1:118:52,65:52:1798:65:2316:-173.228,0,-126.626	0/1:114:68,45:68:2383:45:1616:-111.354,0,-180.352	1/1:136:2,133:2:57:133:4763:-423.423,-35.4865,0	1/1:66:6,60:6:209:60:2136:-173.358,-0.717471,0	1/1:73:0,72:0:0:72:2575:-231.747,-21.6742,0	0/1:236:96,140:96:3321:140:5009:-379.914,0,-228.067	1/1:215:1,214:1:23:214:7646:-685.875,-62.4215,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:274:127,146:127:4437:146:5169:-382.92,0,-317.076	1/1:78:0,77:0:0:77:2759:-248.191,-23.1793,0	1/1:75:1,73:1:36:73:2607:-231.357,-18.9579,0	1/1:2:0,1:0:0:1:36:-3.30337,-0.30103,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891	1/1:7:0,7:0:0:7:239:-21.8427,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:146:71,74:71:2366:74:2635:-193.516,0,-169.313	1/1:125:0,124:0:0:124:4442:-399.7,-37.3277,0	0/1:45:31,14:31:1014:14:481:-30.0687,0,-78.0066	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:89:44,45:44:1500:45:1594:-116.957,0,-108.496	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	1/1:164:0,164:0:0:164:5804:-522.458,-49.3689,0	1/1:56:0,56:0:0:56:1985:-178.923,-16.8577,0	1/1:46:0,45:0:0:45:1576:-141.876,-13.5464,0	1/1:116:0,116:0:0:116:4126:-371.525,-34.9195,0	1/1:128:0,128:0:0:128:4579:-412.275,-38.5318,0	0/1:95:46,48:46:1610:48:1700:-124.734,0,-116.638	0/1:85:38,47:38:1301:47:1684:-126.259,0,-91.7966	0/1:76:42,34:42:1468:34:1209:-86.2359,0,-109.535	0/1:100:43,57:43:1472:57:2044:-154.129,0,-102.666	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:105:0,105:0:0:105:3760:-338.6,-31.6082,0	1/1:103:0,103:0:0:103:3654:-329.066,-31.0061,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:122:0,121:0:0:121:4307:-387.447,-36.4246,0	1/1:60:0,60:0:0:60:2107:-189.896,-18.0618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:12:3,8:3:101:8:280:-21.9663,0,-5.84017	1/1:94:0,94:0:0:94:3367:-303.245,-28.2968,0	1/1:103:1,102:1:36:102:3637:-323.937,-27.4078,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:161:0,160:0:0:160:5748:-517.074,-48.1648,0	0/1:108:62,45:62:2139:45:1595:-111.376,0,-160.313	1/1:108:0,108:0:0:108:3841:-345.888,-32.5112,0	1/1:72:0,72:0:0:72:2573:-231.818,-21.6742,0	1/1:136:2,134:2:70:134:4787:-424.339,-34.2928,0	0/1:148:84,63:84:2907:63:2259:-159.069,0,-217.365	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:61:0,61:0:0:61:2162:-194.847,-18.3628,0	1/1:50:0,49:0:0:49:1735:-156.201,-14.7505,0	1/1:35:1,34:1:34:34:1207:-105.536,-7.13714,0	0/1:148:69,78:69:2408:78:2775:-205.38,0,-172.364	0/1:66:30,36:30:1019:36:1288:-96.3556,0,-72.1457	1/1:110:0,110:0:0:110:3910:-352.095,-33.1133,0	1/1:178:0,177:0:0:177:6338:-570.26,-53.2823,0	0/1:100:53,46:53:1842:46:1652:-118.807,0,-135.895	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:43:14,29:14:476:29:1044:-81.3305,0,-30.2178	0/1:119:49,67:49:1648:67:2384:-179.574,0,-113.355	0/1:226:78,147:78:2675:147:5244:-404.115,0,-173.011	0/1:60:27,33:27:930:33:1172:-87.7257,0,-65.9488	0/1:77:32,45:32:1134:45:1608:-121.831,0,-79.1896	1/1:56:0,53:0:0:53:1877:-168.965,-15.9546,0	0/1:177:98,78:98:3346:78:2788:-197.859,0,-248.058	0/1:27:16,11:16:549:11:385:-26.8564,0,-41.6048	1/1:73:0,73:0:0:73:2572:-231.728,-21.9752,0	1/1:81:0,81:0:0:81:2876:-259.077,-24.3834,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:107:50,57:50:1748:57:2013:-149.231,0,-125.392	0/1:71:44,27:44:1505:27:951:-64.5312,0,-114.363	1/1:144:0,144:0:0:144:5145:-463.191,-43.3483,0	1/1:128:1,126:1:25:126:4516:-404.107,-35.9809,0
chr01	25959698	.	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chr01	25966706	.	T	A	291416	PASS	AB=0.524657;ABP=34.1715;AC=148;AF=0.787234;AN=188;AO=10669;CIGAR=1X;DP=13491;DPB=13491;DPRA=145.054;EPP=23170.4;EPPR=6120.05;GTI=2;LEN=1;MEANALT=1.05376;MQM=58.1398;MQMR=46.4512;NS=94;NUMALT=1;ODDS=2.28209;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=380761;QR=100503;RO=2817;RPL=5044;RPP=71.7144;RPPR=28.8252;RPR=5625;RUN=1;SAF=5044;SAP=71.7144;SAR=5625;SRF=1317;SRP=28.8252;SRR=1500;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:142:0,142:0:0:142:5039:-452.482,-42.7463,0	0/1:115:58,57:58:2080:57:2037:-148.728,0,-131.08	1/1:239:0,239:0:0:239:8517:-765.789,-71.9462,0	1/1:287:0,286:0:0:286:10247:-921.409,-86.0946,0	0/1:70:31,39:31:1112:39:1404:-105.352,0,-72.8822	0/1:88:52,36:52:1844:36:1276:-88.5018,0,-118.125	0/1:183:99,84:99:3533:84:3012:-216.074,0,-234.408	1/1:224:1,223:1:36:223:7964:-712.689,-64.6945,0	1/1:294:0,294:0:0:294:10518:-944.753,-88.5028,0	1/1:189:0,189:0:0:189:6753:-607.047,-56.8947,0	1/1:105:0,105:0:0:105:3744:-336.59,-31.6082,0	1/1:228:0,228:0:0:228:8054:-722.815,-68.6348,0	0/1:196:90,106:90:3215:106:3775:-279.923,0,-193.277	0/1:108:54,54:54:1928:54:1932:-141.021,0,-122.501	0/1:131:67,63:67:2400:63:2232:-161.105,0,-159.716	1/1:180:0,180:0:0:180:6411:-576.573,-54.1854,0	1/1:96:1,95:1:36:95:3416:-303.817,-25.3006,0	0/1:73:44,29:44:1557:29:1028:-70.7655,0,-97.0674	0/1:61:29,32:29:1040:32:1114:-82.0648,0,-64.6435	0/1:296:141,155:141:5039:155:5551:-410.447,0,-338.387	0/1:294:148,146:148:5271:146:5225:-381.592,0,-345.821	0/1:81:53,28:53:1876:28:1001:-65.9909,0,-135.503	1/1:183:2,181:2:54:181:6456:-575.909,-50.1848,0	0/1:151:15,136:15:540:136:4838:-388.219,0,-0.0160822	1/1:190:0,190:0:0:190:6812:-612.245,-57.1957,0	0/1:244:92,152:92:3300:152:5433:-415.468,0,-208.738	1/1:132:0,132:0:0:132:4710:-423.44,-39.736,0	1/1:91:0,91:0:0:91:3231:-290.851,-27.3937,0	0/1:246:101,144:101:3584:144:5120:-386.867,0,-230.525	1/1:150:1,149:1:36:149:5306:-474.13,-42.2517,0	1/1:214:1,213:1:36:213:7636:-683.063,-60.8221,0	1/1:7:0,7:0:0:7:252:-23.0274,-2.10721,0	1/1:10:0,10:0:0:10:351:-31.9236,-3.0103,0	0/1:9:4,5:4:144:5:176:-13.4655,0,-9.00114	1/1:9:0,9:0:0:9:324:-29.3852,-2.70927,0	1/1:7:0,7:0:0:7:244:-22.2864,-2.10721,0	0/1:255:104,151:104:3703:151:5381:-407.462,0,-238.671	1/1:113:0,113:0:0:113:4064:-365.29,-34.0164,0	0/1:70:26,44:26:919:44:1580:-121.366,0,-53.2226	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.90276	0/1:183:96,87:96:3428:87:3101:-224.156,0,-224.624	1/1:45:0,45:0:0:45:1607:-144.513,-13.5464,0	1/1:224:0,224:0:0:224:7994:-718.729,-67.4307,0	1/1:150:0,150:0:0:150:5341:-480.362,-45.1545,0	1/1:140:0,140:0:0:140:4998:-449.618,-42.1442,0	1/1:157:0,157:0:0:157:5619:-505.648,-47.2617,0	1/1:157:0,157:0:0:157:5624:-505.865,-47.2617,0	0/1:202:96,106:96:3439:106:3802:-281.333,0,-225.034	0/1:161:76,85:76:2720:85:3025:-223.858,0,-175.297	0/1:147:57,90:57:2036:90:3200:-243.869,0,-125.07	0/1:200:105,95:105:3740:95:3404:-245.884,0,-252.138	1/1:11:0,11:0:0:11:396:-35.9819,-3.31133,0	1/1:173:1,172:1:36:172:6163:-550.431,-48.4799,0	1/1:108:0,108:0:0:108:3852:-346.687,-32.5112,0	1/1:4:0,4:0:0:4:144:-13.3033,-1.20412,0	1/1:193:0,193:0:0:193:6901:-620.583,-58.0988,0	1/1:88:0,88:0:0:88:3146:-283.221,-26.4906,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:3,8:3:108:8:288:-22.9274,0,-6.76384	1/1:146:1,145:1:36:145:5159:-460.101,-41.0476,0	1/1:174:1,173:1:36:173:6197:-553.797,-48.7809,0	1/1:5:0,5:0:0:5:180:-16.5517,-1.50515,0	1/1:208:0,208:0:0:208:7450:-670.343,-62.6142,0	0/1:225:93,132:93:3329:132:4707:-355.905,0,-209.985	1/1:133:0,133:0:0:133:4723:-424.254,-40.037,0	1/1:86:1,85:1:36:85:3041:-269.779,-22.2903,0	1/1:235:0,235:0:0:235:8346:-750.409,-70.7421,0	0/1:197:153,44:153:5424:44:1576:-82.8135,0,-397.081	1/1:62:0,62:0:0:62:2203:-198.488,-18.6639,0	1/1:132:0,132:0:0:132:4693:-421.634,-39.736,0	1/1:75:0,75:0:0:75:2665:-239.724,-22.5773,0	1/1:46:0,46:0:0:46:1636:-147.447,-13.8474,0	0/1:93:40,53:40:1428:53:1892:-141.982,0,-83.7425	0/1:177:78,99:78:2779:99:3548:-265.257,0,-176.377	1/1:411:1,410:1:36:410:14575:-1306.05,-120.125,0	1/1:216:1,215:1:36:215:7696:-688.717,-61.9679,0	0/1:110:69,40:69:2480:40:1440:-96.6714,0,-171.39	1/1:154:0,154:0:0:154:5523:-496.474,-46.3586,0	1/1:19:0,19:0:0:19:669:-60.4839,-5.71957,0	0/1:175:74,101:74:2648:101:3623:-273.438,0,-166.443	0/1:197:96,101:96:3440:101:3615:-265.766,0,-218.445	0/1:346:145,201:145:5197:201:7158:-539.394,0,-331.474	0/1:112:58,54:58:2064:54:1927:-139.947,0,-139.635	0/1:122:60,62:60:2127:62:2203:-161.619,0,-144.277	1/1:93:0,93:0:0:93:3308:-297.844,-27.9958,0	0/1:222:109,113:109:3884:113:4003:-293.289,0,-255.243	0/1:60:28,32:28:1008:32:1152:-85.6609,0,-62.9906	1/1:170:0,170:0:0:170:6057:-544.59,-51.1751,0	1/1:179:0,179:0:0:179:6395:-574.818,-53.8844,0	1/1:63:0,63:0:0:63:2251:-202.59,-18.9649,0	0/1:147:66,81:66:2342:81:2891:-215.845,0,-148.803	0/1:143:92,51:92:3279:51:1820:-120.777,0,-231.047	1/1:189:0,189:0:0:189:6747:-606.932,-56.8947,0	1/1:252:2,249:2:68:249:8887:-794.012,-70.4842,0
chr01	25966708	.	T	A	56241.8	PASS	AB=0.474163;ABP=37.4589;AC=40;AF=0.212766;AN=188;AO=2832;CIGAR=1X;DP=13585;DPB=13585;DPRA=1.23082;EPP=6152.62;EPPR=23324.6;GTI=2;LEN=1;MEANALT=1.10204;MQM=46.7881;MQMR=58.1768;NS=94;NUMALT=1;ODDS=2.4201;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100587;QR=383661;RO=10744;RPL=1288;RPP=53.2609;RPPR=90.5168;RPR=1544;RUN=1;SAF=1288;SAP=53.2609;SAR=1544;SRF=5042;SRP=91.0495;SRR=5702;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:145:145,0:145:5171:0:0:0,-43.6493,-463.51	0/1:118:59,59:59:2111:59:2075:-132.227,0,-154.433	0/0:241:241,0:241:8641:0:0:0,-72.5482,-776.934	0/0:289:288,0:288:10269:0:0:0,-86.6966,-923.478	0/1:72:40,31:40:1408:31:1108:-72.8137,0,-105.185	0/1:85:37,48:37:1328:48:1724:-109.469,0,-94.0302	0/1:186:85,101:85:3035:101:3556:-239.224,0,-217.214	0/0:229:227,2:227:8111:2:53:0,-64.3537,-724.319	0/0:299:299,0:299:10663:0:0:0,-90.008,-956.718	0/0:188:188,0:188:6727:0:0:0,-56.5936,-604.786	0/0:105:105,0:105:3759:0:0:0,-31.6081,-337.947	0/0:229:229,0:229:8178:0:0:0,-68.9359,-734.169	0/1:196:104,92:104:3697:92:3280:-199.355,0,-273.424	0/1:106:53,53:53:1892:53:1883:-121.662,0,-138.267	0/1:133:66,67:66:2343:67:2384:-159.304,0,-170.58	0/0:181:181,0:181:6424:0:0:0,-54.4864,-577.721	0/0:95:94,1:94:3376:1:36:0,-24.9996,-300.283	0/1:73:29,44:29:1032:44:1568:-98.9741,0,-71.1219	0/1:66:36,30:36:1284:30:1064:-66.3562,0,-95.7553	0/1:296:155,141:155:5552:141:5016:-338.646,0,-410.539	0/1:299:149,150:149:5314:150:5335:-351.58,0,-388.092	0/1:79:28,51:28:1004:51:1811:-130.958,0,-66.864	0/0:180:178,2:178:6384:2:72:0,-48.3818,-568.616	0/1:149:133,16:133:4763:16:548:-1.90025,0,-383.096	0/0:192:192,0:192:6856:0:0:0,-57.7978,-616.347	0/1:241:153,88:153:5488:88:3148:-196.511,0,-421.343	0/0:132:131,0:131:4700:0:0:0,-39.4349,-422.513	0/0:93:92,0:92:3285:0:0:0,-27.6948,-295.499	0/1:253:149,104:149:5291:104:3691:-237.967,0,-400.083	0/0:152:151,0:151:5390:0:0:0,-45.4555,-484.151	0/0:215:212,2:212:7583:2:68:0,-58.2626,-675.476	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0274	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9796	0/1:8:5,3:5:180:3:108:-6.05773,0,-14.1336	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.3852	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0139	0/1:256:150,106:150:5362:106:3765:-245.358,0,-405.52	0/0:108:108,0:108:3801:0:0:0,-32.5112,-341.837	0/1:70:43,27:43:1544:27:968:-56.7297,0,-118.128	1/1:1:0,1:0:0:1:36:-2.90276,-0.30103,0	0/1:183:87,95:87:3102:95:3393:-223.502,0,-224.191	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.257	0/0:223:223,0:223:7987:0:0:0,-67.1297,-718.136	0/0:151:151,0:151:5387:0:0:0,-45.4555,-484.238	0/0:139:139,0:139:4960:0:0:0,-41.8432,-446.239	0/0:161:161,0:161:5772:0:0:0,-48.4658,-519.397	0/0:159:159,0:159:5675:0:0:0,-47.8638,-510.452	0/1:208:110,98:110:3927:98:3489:-227.924,0,-290.731	0/1:163:86,77:86:3096:77:2753:-177.335,0,-229.642	0/1:142:88,54:88:3151:54:1940:-119.953,0,-240.955	0/1:205:95,110:95:3408:110:3871:-264.091,0,-244.918	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6192	0/0:173:173,0:173:6195:0:0:0,-52.0782,-556.714	0/0:111:111,0:111:3976:0:0:0,-33.4143,-357.603	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3033	0/0:198:198,0:198:7020:0:0:0,-59.6039,-631.272	0/0:89:89,0:89:3164:0:0:0,-26.7917,-284.828	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.5803	0/0:146:144,2:144:5156:2:63:0,-38.7951,-457.807	0/0:171:170,1:170:6095:1:36:0,-47.8779,-544.692	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5517	0/0:208:208,0:208:7416:0:0:0,-62.6142,-667.36	0/1:221:131,90:131:4696:90:3197:-201.614,0,-355.914	0/0:135:135,0:135:4836:0:0:0,-40.639,-434.332	0/0:89:88,1:88:3124:1:36:0,-23.1934,-277.267	0/0:240:239,1:239:8507:1:28:0,-69.5925,-761.361	0/1:196:42,154:42:1496:154:5489:-403.75,0,-75.9263	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.508	0/0:134:134,0:134:4775:0:0:0,-40.338,-428.231	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.207	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.69	0/1:93:54,39:54:1925:39:1383:-81.7742,0,-144.954	0/1:176:99,77:99:3487:77:2729:-171.974,0,-260.091	0/0:408:408,0:408:14549:0:0:0,-122.82,-1307.51	0/0:220:219,1:219:7831:1:36:0,-63.1721,-700.861	0/1:109:40,69:40:1432:69:2454:-171.794,0,-96.3071	0/0:157:157,0:157:5597:0:0:0,-47.2617,-503.325	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5447	0/1:179:101,78:101:3601:78:2757:-175.918,0,-270.165	0/1:199:101,98:101:3603:98:3499:-226.031,0,-264.094	0/1:352:205,147:205:7294:147:5236:-335.427,0,-549.552	0/1:113:55,58:55:1972:58:2007:-136.681,0,-143.602	0/1:126:63,63:63:2256:63:2251:-153.804,0,-165.092	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.199	0/1:229:115,113:115:4128:113:3987:-263.604,0,-302.345	0/1:59:33,26:33:1180:26:920:-56.7272,0,-88.4785	0/0:171:171,0:171:6074:0:0:0,-51.4761,-545.729	0/0:178:178,0:178:6344:0:0:0,-53.5833,-570.282	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.236	0/1:150:82,68:82:2944:68:2405:-155.025,0,-219.707	0/1:141:52,89:52:1853:89:3187:-222.937,0,-124.347	0/0:193:193,0:193:6893:0:0:0,-58.0988,-619.932	0/0:253:251,1:251:8978:1:36:0,-74.041,-805.519
chr01	25966743	.	CAAG	AAAC,CAAC	154235	PASS	AB=0.507822,0.486859;ABP=4.70889,7.80439;AC=148,38;AF=0.795699,0.204301;AN=186;AO=5653,1561;CIGAR=1X2M1X,3M1X;DP=7236;DPB=7243.75;DPRA=0,1.13947;EPP=12278.3,3392.68;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.6129,2.2381;MQM=59.6531,59.6797;MQMR=60;NS=93;NUMALT=2;ODDS=1.24032;PAIRED=0,0;PAIREDR=0;PAO=23,0;PQA=692,0;PQR=0;PRO=0;QA=199539,55619;QR=25;RO=1;RPL=5653,1561;RPP=12278.3,3392.68;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12278.3,3392.68;SAR=5653,1561;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:75:0,75,0:0:0:75,0:2644,0:-238.195,-22.5773,0,-238.195,-22.5773,-238.195	1/2:51:0,20,30:0:0:20,30:715,1072:-145.737,-87.4366,-81.416,-58.3453,0,-49.3144	1/1:160:0,160,0:0:0:160,0:5644,0:-507.687,-48.1648,0,-507.687,-48.1648,-507.687	1/1:174:0,174,0:0:0:174,0:6113,0:-550.276,-52.3792,0,-550.276,-52.3792,-550.276	1/2:42:0,20,22:0:0:20,22:713,792:-122.681,-64.6186,-58.598,-58.0605,0,-51.4379	1/2:49:0,24,25:0:0:24,25:845,873:-140.14,-71.3502,-64.1255,-69.1399,0,-61.6141	1/2:108:0,52,56:0:0:52,56:1844,1966:-310.527,-160.339,-144.686,-150.54,0,-133.682	1/1:120:0,119,0:0:0:119,0:4205,0:-377.88,-35.8226,0,-377.88,-35.8226,-377.88	1/1:126:0,126,0:0:0:126,0:4440,0:-399.314,-37.9298,0,-399.314,-37.9298,-399.314	1/1:84:0,84,0:0:0:84,0:2967,0:-267.263,-25.2865,0,-267.263,-25.2865,-267.263	1/1:56:0,55,0:0:0:55,0:1958,0:-176.174,-16.5567,0,-176.174,-16.5567,-176.174	1/1:123:0,123,0:0:0:123,0:4332,0:-389.916,-37.0267,0,-389.916,-37.0267,-389.916	1/2:99:0,55,44:0:0:55,44:1939,1569:-286.059,-128.188,-111.631,-158.226,0,-144.98	1/2:58:0,32,26:0:0:32,26:1107,917:-164.731,-75.0096,-65.3767,-90.0704,0,-82.2436	1/2:63:0,26,37:0:0:26,37:930,1324:-184.155,-108.322,-100.495,-76.1907,0,-65.0526	1/1:92:0,92,0:0:0:92,0:3259,0:-293.458,-27.6948,0,-293.458,-27.6948,-293.458	1/1:54:0,53,1:0:0:53,1:1868,36:-168.034,-15.9546,0,-165.096,-12.6573,-164.795	1/2:36:0,19,17:0:0:19,17:661,612:-104.029,-50.2959,-44.5764,-54.0873,0,-48.9698	1/2:28:0,12,16:0:0:12,16:425,576:-81.9517,-47.3478,-43.7355,-34.9602,0,-30.1438	1/2:180:0,90,90:0:0:90,90:3168,3213:-520.117,-262.292,-235.199,-258.18,0,-231.087	1/2:155:1,69,85:1:25:69,85:2429,3037:-442.55,-245.145,-226.322,-195.861,0,-172.221	1/2:39:0,12,27:0:0:12,27:432,949:-112.846,-77.5946,-73.9822,-35.6088,0,-27.481	1/1:91:0,91,0:0:0:91,0:3203,0:-288.098,-27.3937,0,-288.098,-27.3937,-288.098	1/2:75:0,65,10:0:0:65,10:2321,356:-218.593,-29.3709,-9.804,-189.578,0,-186.567	1/1:94:0,94,0:0:0:94,0:3290,0:-296.038,-28.2968,0,-296.038,-28.2968,-296.038	1/2:121:0,67,52:0:0:67,52:2389,1868:-347.144,-152.403,-132.234,-194.76,0,-179.106	1/1:61:0,61,0:0:0:61,0:2166,0:-195.15,-18.3628,0,-195.15,-18.3628,-195.15	1/1:44:0,44,0:0:0:44,0:1553,0:-139.703,-13.2453,0,-139.703,-13.2453,-139.703	1/2:127:0,70,57:0:0:70,57:2493,2048:-370.625,-167.432,-146.36,-203.551,0,-186.392	1/1:78:0,78,0:0:0:78,0:2695,0:-242.787,-23.4803,0,-242.787,-23.4803,-242.787	1/1:113:0,111,2:0:0:111,2:3880,72:-349.051,-33.4143,0,-343.176,-27.5245,-342.574	1/1:7:0,7,0:0:0:7,0:252,0:-23.0274,-2.10721,0,-23.0274,-2.10721,-23.0274	1/1:10:0,10,0:0:0:10,0:352,0:-32.0181,-3.0103,0,-32.0181,-3.0103,-32.0181	1/2:5:0,3,2:0:0:3,2:108,68:-14.6731,-5.8522,-4.94911,-9.16862,0,-8.56656	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:6:0,6,0:0:0:6,0:210,0:-19.2304,-1.80618,0,-19.2304,-1.80618,-19.2304	1/2:128:0,73,55:0:0:73,55:2588,1976:-372.354,-161.554,-139.579,-211.158,0,-194.601	1/1:44:0,44,0:0:0:44,0:1577,0:-142.217,-13.2453,0,-142.217,-13.2453,-142.217	1/2:45:0,29,16:0:0:29,16:1036,568:-131.104,-46.6354,-37.9055,-84.824,0,-80.0075	.:.:.:.:.:.:.:.	1/2:102:0,50,52:0:0:50,52:1728,1842:-290.789,-150.398,-135.347,-140.74,0,-125.087	1/1:25:0,25,0:0:0:25,0:894,0:-80.7749,-7.52575,0,-80.7749,-7.52575,-80.7749	1/1:94:0,94,0:0:0:94,0:3309,0:-298.023,-28.2968,0,-298.023,-28.2968,-298.023	1/1:87:0,86,0:0:0:86,0:3048,0:-274.249,-25.8886,0,-274.249,-25.8886,-274.249	1/1:73:0,73,0:0:0:73,0:2597,0:-233.934,-21.9752,0,-233.934,-21.9752,-233.934	1/1:88:0,88,0:0:0:88,0:3089,0:-278.024,-26.4906,0,-278.024,-26.4906,-278.024	1/1:70:0,70,0:0:0:70,0:2464,0:-222.007,-21.0721,0,-222.007,-21.0721,-222.007	1/2:94:0,42,50:0:0:42,50:1494,1781:-266.911,-145.157,-132.514,-121.75,0,-106.698	1/2:88:0,53,35:0:0:53,35:1875,1248:-254.802,-102.084,-86.1295,-153.073,0,-142.537	1/2:80:0,51,29:0:0:51,29:1792,1044:-231.394,-85.5449,-70.1924,-146.206,0,-137.476	1/2:95:0,45,47:0:0:45,47:1582,1669:-264.189,-135.477,-121.93,-128.705,0,-114.557	1/1:10:0,10,0:0:0:10,0:351,0:-31.9265,-3.0103,0,-31.9265,-3.0103,-31.9265	1/1:87:0,87,0:0:0:87,0:3095,0:-278.727,-26.1896,0,-278.727,-26.1896,-278.727	1/1:70:0,70,0:0:0:70,0:2475,0:-222.812,-21.0721,0,-222.812,-21.0721,-222.812	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:93:0,93,0:0:0:93,0:3308,0:-297.906,-27.9958,0,-297.906,-27.9958,-297.906	1/1:39:0,39,0:0:0:39,0:1389,0:-125.309,-11.7402,0,-125.309,-11.7402,-125.309	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827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chr01	25971376	.	TGA	TGG,CGG	101523	PASS	AB=0.474364,0.520791;ABP=17.1499,12.3107;AC=148,40;AF=0.787234,0.212766;AN=188;AO=3764,1298;CIGAR=2M1X,1X1M1X;DP=5087;DPB=5087;DPRA=36.8406,1.39273;EPP=8176.43,2821.58;EPPR=7.35324;GTI=2;LEN=1,3;MEANALT=1.67391,2.21429;MQM=59.597,31.8382;MQMR=60;NS=94;NUMALT=2;ODDS=0.382908;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=133894,45659;QR=67;RO=2;RPL=0,0;RPP=8176.43,2821.58;RPPR=7.35324;RPR=3764,1298;RUN=1,1;SAF=3764,1298;SAP=8176.43,2821.58;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5047,-9.0309,0,-97.5047,-9.0309,-97.5047	1/2:42:0,19,22:0:0:19,22:680,788:-110.938,-55.4668,-49.7472,-55.4499,0,-48.8272	1/1:48:0,48,0:0:0:48,0:1716,0:-154.719,-14.4494,0,-154.719,-14.4494,-154.719	1/1:139:0,138,0:0:0:138,0:4904,0:-441.258,-41.5421,0,-441.258,-41.5421,-441.258	1/2:45:0,20,25:0:0:20,25:720,894:-119.105,-60.3301,-54.3095,-59.1082,0,-51.5824	1/2:28:0,14,14:0:0:14,14:498,494:-73.7147,-33.1023,-28.8879,-40.9371,0,-36.7226	1/2:50:0,31,18:0:0:31,18:1116,633:-134.67,-43.588,-34.256,-91.2017,0,-85.7832	1/1:81:0,80,0:0:0:80,0:2830,0:-254.724,-24.0824,0,-254.724,-24.0824,-254.724	1/1:32:0,32,0:0:0:32,0:1144,0:-103.265,-9.63296,0,-103.265,-9.63296,-103.265	1/1:62:0,62,0:0:0:62,0:2178,0:-196.269,-18.6639,0,-196.269,-18.6639,-196.269	1/1:28:0,28,0:0:0:28,0:1000,0:-90.2583,-8.42884,0,-90.2583,-8.42884,-90.2583	1/1:56:0,54,0:0:0:54,0:1928,0:-173.422,-16.2556,0,-173.422,-16.2556,-173.422	1/2:57:0,30,27:0:0:30,27:1072,956:-152.963,-65.5345,-56.5036,-87.7569,0,-79.6291	1/2:54:0,21,32:0:0:21,32:752,1117:-137.19,-75.8382,-69.5165,-61.4697,0,-51.8367	1/2:31:0,12,19:0:0:12,19:432,675:-80.8836,-45.6108,-41.9984,-35.6088,0,-29.8893	1/1:31:0,31,0:0:0:31,0:1101,0:-99.3984,-9.33193,0,-99.3984,-9.33193,-99.3984	1/1:35:0,35,0:0:0:35,0:1239,0:-111.814,-10.5361,0,-111.814,-10.5361,-111.814	1/2:35:0,19,16:0:0:19,16:680,570:-95.7203,-40.2453,-34.5257,-55.8072,0,-50.9908	1/2:14:0,8,6:0:0:8,6:288,214:-37.9526,-14.4162,-12.0079,-23.8592,0,-22.053	1/2:82:0,43,38:0:0:43,38:1532,1345:-216.574,-91.6872,-78.7429,-124.884,0,-113.445	1/2:69:0,43,26:0:0:43,26:1521,909:-184.673,-60.7595,-47.8152,-124.229,0,-116.402	1/2:126:0,32,94:0:0:32,94:1129,3274:-314.15,-222.215,-212.582,-92.2723,0,-63.9755	1/1:39:0,39,0:0:0:39,0:1374,0:-123.95,-11.7402,0,-123.95,-11.7402,-123.95	1/1:40:0,38,1:0:0:38,1:1364,36:-122.791,-11.4391,0,-120.344,-8.94336,-120.043	1/1:40:0,39,0:0:0:39,0:1400,0:-126.062,-11.7402,0,-126.062,-11.7402,-126.062	1/2:175:0,72,103:0:0:72,103:2561,3597:-454.385,-245.714,-224.04,-209.003,0,-177.997	1/1:108:0,108,0:0:0:108,0:3846,0:-345.775,-32.5112,0,-345.775,-32.5112,-345.775	1/1:16:0,16,0:0:0:16,0:561,0:-50.8171,-4.81648,0,-50.8171,-4.81648,-50.8171	1/2:168:0,92,75:0:0:92,75:3269,2623:-445.123,-178.731,-151.036,-266.357,0,-243.78	1/1:90:0,88,2:0:0:88,2:3135,72:-281.473,-26.4906,0,-276.091,-20.776,-275.489	1/1:86:0,86,0:0:0:86,0:3042,0:-273.876,-25.8886,0,-273.876,-25.8886,-273.876	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	2/2:2:0,0,2:0:0:0,2:0,72:-5.93491,-5.93491,-5.93491,-0.60206,-0.60206,0	1/1:3:0,3,0:0:0:3,0:106,0:-9.88756,-0.90309,0,-9.88756,-0.90309,-9.88756	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:109:0,65,44:0:0:65,44:2317,1520:-292.015,-103.111,-83.5445,-189.222,0,-175.976	1/1:49:0,49,0:0:0:49,0:1760,0:-158.665,-14.7505,0,-158.665,-14.7505,-158.665	1/2:31:0,14,16:0:0:14,16:504,568:-80.8671,-39.7218,-35.5074,-41.1275,0,-36.3111	1/2:4:0,1,3:0:0:1,3:36,108:-9.70527,-6.74619,-6.44516,-3.29724,0,-2.39415	1/2:96:0,56,40:0:0:56,40:1997,1431:-260.219,-97.452,-80.5944,-163.093,0,-151.051	1/1:21:0,21,0:0:0:21,0:756,0:-68.3639,-6.32163,0,-68.3639,-6.32163,-68.3639	1/1:66:0,65,0:0:0:65,0:2310,0:-207.812,-19.567,0,-207.812,-19.567,-207.812	1/1:31:0,31,0:0:0:31,0:1100,0:-99.2486,-9.33193,0,-99.2486,-9.33193,-99.2486	1/1:32:0,32,0:0:0:32,0:1152,0:-103.986,-9.63296,0,-103.986,-9.63296,-103.986	1/1:34:0,34,0:0:0:34,0:1201,0:-108.377,-10.235,0,-108.377,-10.235,-108.377	1/1:76:0,76,0:0:0:76,0:2717,0:-244.77,-22.8783,0,-244.77,-22.8783,-244.77	1/2:111:0,62,49:0:0:62,49:2209,1747:-298.493,-118.414,-99.75,-180.405,0,-165.654	1/2:72:0,35,37:0:0:35,37:1237,1293:-188.439,-87.7185,-77.1824,-101.046,0,-89.9082	1/2:82:0,47,33:0:0:47,33:1688,1168:-214.852,-77.1183,-62.9698,-137.702,0,-127.768	1/2:71:1,40,29:1:33:40,29:1425,1014:-180.624,-64.7413,-55.3695,-113.528,0,-107.466	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:62:0,62,0:0:0:62,0:2197,0:-197.994,-18.6639,0,-197.994,-18.6639,-197.994	1/1:23:0,23,0:0:0:23,0:805,0:-72.7674,-6.92369,0,-72.7674,-6.92369,-72.7674	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:85:0,85,0:0:0:85,0:3014,0:-271.476,-25.5876,0,-271.476,-25.5876,-271.476	1/1:18:0,18,0:0:0:18,0:640,0:-57.8675,-5.41854,0,-57.8675,-5.41854,-57.8675	1/1:13:0,13,0:0:0:13,0:468,0:-42.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chr01	25971385	.	A	G	14839.1	PASS	AB=0.518122;ABP=9.93612;AC=40;AF=0.212766;AN=188;AO=1264;CIGAR=1X;DP=5009;DPB=5009;DPRA=1.41428;EPP=2747.75;EPPR=8135.17;GTI=1;LEN=1;MEANALT=1;MQM=31.7864;MQMR=59.5354;NS=94;NUMALT=1;ODDS=0.25852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45080;QR=133891;RO=3745;RPL=0;RPP=2747.75;RPPR=8135.17;RPR=1264;RUN=1;SAF=1264;SAP=2747.75;SAR=0;SRF=3745;SRP=8135.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1849	0/1:41:21,20:21:752:20:720:-44.1956,0,-55.6617	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.837	0/0:141:141,0:141:5049:0:0:0,-42.4452,-454.475	0/1:42:17,25:17:603:25:900:-55.3771,0,-41.9558	0/1:28:14,14:14:504:14:504:-29.3599,0,-37.263	0/1:48:30,18:30:1072:18:648:-34.8074,0,-82.3256	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.325	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.503	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.439	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.9064	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.613	0/1:57:30,27:30:1080:27:964:-56.863,0,-80.3499	0/1:52:21,31:21:748:31:1108:-67.9773,0,-51.9917	0/1:31:12,19:12:432:19:680:-42.0814,0,-29.8893	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.777	0/1:34:18,16:18:648:16:572:-34.8969,0,-48.4145	0/1:15:9,6:9:320:6:208:-11.3887,0,-24.6269	0/1:83:45,38:45:1596:38:1368:-79.3573,0,-118.718	0/1:67:43,24:43:1532:24:860:-44.2661,0,-117.994	0/1:122:31,91:31:1108:91:3247:-209.39,0,-63.2961	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.808	0/0:40:39,1:39:1396:1:36:0,-8.98666,-122.88	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.02	0/1:171:72,99:72:2576:99:3541:-217.714,0,-180.555	0/0:108:108,0:108:3856:0:0:0,-32.5112,-346.127	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/1:161:89,72:89:3165:72:2567:-147.302,0,-236.589	0/0:87:86,1:86:3068:1:36:0,-23.1351,-273.279	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.729	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:2:0,2:0:0:2:68:-5.76636,-0.60206,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9422	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:108:65,43:65:2324:43:1531:-83.3747,0,-176.909	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.508	0/1:30:14,16:14:504:16:576:-36.656,0,-36.6672	0/1:4:1,3:1:36:3:108:-6.44516,0,-2.39415	0/1:93:54,39:54:1940:39:1400:-78.957,0,-146.829	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1254	0/0:65:65,0:65:2301:0:0:0,-19.5669,-207.342	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.773	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.224	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.093	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.813	0/1:110:63,47:63:2264:47:1688:-95.0195,0,-170.9	0/1:71:34,37:34:1212:37:1331:-79.485,0,-87.9633	0/1:82:47,35:47:1673:35:1245:-69.0878,0,-126.169	0/1:70:42,28:42:1500:28:983:-53.3384,0,-114.212	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1612	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.297	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.1558	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0402	1/1:1:0,1:0:0:1:36:-3.05454,-0.30103,0	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.12	0/0:86:86,0:86:3076:0:0:0,-25.8886,-276.934	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:161:161,0:161:5742:0:0:0,-48.4658,-516.868	0/1:145:70,75:70:2508:75:2677:-158.626,0,-180.46	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.278	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.042	0/0:59:58,1:58:2065:1:36:0,-14.7062,-183.033	0/1:56:18,38:18:636:38:1353:-84.8331,0,-40.6975	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4101	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.478	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:59:35,24:35:1252:24:860:-48.9819,0,-95.2173	0/1:23:4,19:4:144:19:684:-44.9832,0,-6.38993	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.373	0/0:101:101,0:101:3612:0:0:0,-30.404,-324.47	0/1:78:31,47:31:1112:47:1653:-104.999,0,-76.8328	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.7	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:70:32,38:32:1136:38:1352:-83.1133,0,-81.4734	0/1:80:36,44:36:1288:44:1553:-95.3319,0,-92.1373	0/1:112:49,63:49:1760:63:2244:-138.197,0,-124.774	0/1:40:15,25:15:540:25:892:-56.069,0,-36.8861	0/1:46:14,32:14:500:32:1144:-73.3538,0,-31.4869	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.607	0/1:73:34,39:34:1224:39:1365:-82.6343,0,-88.4872	0/1:22:13,9:13:468:9:315:-18.5167,0,-35.8323	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.214	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1123	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8361	0/1:68:33,35:33:1184:35:1239:-75.2671,0,-86.3983	0/1:36:14,22:14:504:22:788:-49.6703,0,-34.861	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.518	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.034
chr01	25971419	.	A	C	12343.4	PASS	AB=0.49685;ABP=3.2155;AC=40;AF=0.212766;AN=188;AO=1188;CIGAR=1X;DP=5004;DPB=5004;DPRA=1.35975;EPP=2582.72;EPPR=8276.32;GTI=1;LEN=1;MEANALT=1.025;MQM=31.7652;MQMR=59.526;NS=94;NUMALT=1;ODDS=2.49688;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39598;QR=136046;RO=3814;RPL=1188;RPP=2582.72;RPPR=8276.32;RPR=0;RUN=1;SAF=1188;SAP=2582.72;SAR=0;SRF=3814;SRP=8285.01;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1443	0/1:41:21,19:21:752:19:619:-37.7869,0,-55.698	0/0:48:48,0:48:1708:0:0:0,-14.4494,-153.991	0/0:143:143,0:143:5098:0:0:0,-43.0473,-458.815	0/1:43:20,23:20:720:23:784:-47.7636,0,-52.1811	0/1:28:15,13:15:540:13:460:-26.3687,0,-40.5014	0/1:46:30,16:30:1072:16:527:-27.6178,0,-82.9277	0/0:80:80,0:80:2834:0:0:0,-24.0824,-255.227	0/0:33:33,0:33:1164:0:0:0,-9.93399,-105.06	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.037	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.4464	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.639	0/1:54:29,25:29:1036:25:820:-49.0395,0,-77.295	0/1:52:21,31:21:739:31:998:-63.1618,0,-51.1788	0/1:31:12,19:12:432:19:628:-40.097,0,-29.8893	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.163	0/1:34:19,15:19:672:15:478:-29.0736,0,-50.5695	0/1:14:8,6:8:288:6:212:-11.8523,0,-22.053	0/1:78:45,33:45:1608:33:1114:-64.6932,0,-121.3	0/1:68:44,24:44:1580:24:801:-41.098,0,-122.011	0/1:115:32,83:32:1144:83:2736:-179.576,0,-68.6419	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.93	0/0:39:38,1:38:1356:1:36:0,-8.68563,-119.279	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.152	0/1:169:73,96:73:2616:96:3221:-199.449,0,-184.758	0/0:104:104,0:104:3699:0:0:0,-31.3071,-332.451	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.204	0/1:160:92,68:92:3275:68:2340:-133.275,0,-246.782	0/0:88:87,1:87:3095:1:36:0,-23.4361,-274.812	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.144	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:2:0,2:0:0:2:72:-5.93491,-0.60206,0	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9253	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:106:65,41:65:2324:41:1342:-72.9211,0,-177.511	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.746	0/1:31:14,17:14:504:17:550:-35.6851,0,-36.3662	0/1:4:1,3:1:32:3:108:-6.44516,0,-1.99519	0/1:95:56,39:56:2008:39:1338:-75.2024,0,-152.389	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7644	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.435	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.009	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.742	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.956	0/0:75:75,0:75:2662:0:0:0,-22.5772,-239.826	0/1:111:65,46:65:2332:46:1516:-85.5294,0,-176.716	0/1:68:34,34:34:1195:34:1185:-70.4395,0,-87.3346	0/1:77:44,33:44:1576:33:1104:-61.8809,0,-118.951	0/1:67:41,26:41:1459:26:832:-44.8249,0,-111.426	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8418	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:87:87,0:87:3086:0:0:0,-26.1896,-277.955	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.1558	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1638	1/1:1:0,1:0:0:1:36:-3.05454,-0.30103,0	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.36	0/0:87:87,0:87:3086:0:0:0,-26.1896,-277.834	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:163:163,0:163:5836:0:0:0,-49.0679,-525.329	0/1:139:70,69:70:2512:69:2289:-136.466,0,-182.628	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.157	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.001	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.114	0/1:58:19,39:19:680:39:1283:-82.5916,0,-44.0566	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0487	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.518	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:57:37,20:37:1319:20:646:-34.1737,0,-101.847	0/1:23:5,18:5:176:18:585:-39.0621,0,-9.26133	0/0:76:76,0:76:2711:0:0:0,-22.8783,-244.223	0/0:105:105,0:105:3729:0:0:0,-31.6081,-335.393	0/1:76:33,43:33:1184:43:1454:-91.8808,0,-83.9118	0/0:71:70,0:70:2495:0:0:0,-21.0721,-224.012	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:72:33,39:33:1184:39:1337:-82.7107,0,-85.1908	0/1:76:37,39:37:1324:39:1287:-78.2438,0,-96.5799	0/1:113:55,58:55:1952:58:1962:-118.824,0,-141.838	0/1:38:17,21:17:612:21:714:-44.2543,0,-43.965	0/1:45:14,31:14:500:31:1021:-66.9589,0,-31.7852	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.33	0/1:69:36,33:36:1275:33:1077:-63.5534,0,-94.2766	0/1:22:13,9:13:468:9:308:-18.3446,0,-35.8323	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.041	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9403	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7537	0/1:67:33,34:33:1176:34:1098:-67.5616,0,-85.9788	0/1:34:14,20:14:500:20:644:-41.322,0,-35.1012	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.845	0/0:43:43,0:43:1519:0:0:0,-12.9443,-136.832
chr01	25971466	.	T	C	19941.8	PASS	AB=0.509426;ABP=4.85246;AC=39;AF=0.207447;AN=188;AO=1223;CIGAR=1X;DP=4954;DPB=4954;DPRA=1.33816;EPP=2658.72;EPPR=8104.77;GTI=3;LEN=1;MEANALT=1;MQM=51.2339;MQMR=59.6146;NS=94;NUMALT=1;ODDS=0.641554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43494;QR=132857;RO=3731;RPL=0;RPP=2658.72;RPPR=8096.09;RPR=1223;RUN=1;SAF=0;SAP=2658.72;SAR=1223;SRF=1;SRP=8096.09;SRR=3730;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.016	0/1:35:26,9:26:913:9:324:-18.583,0,-71.943	0/0:133:133,0:133:4757:0:0:0,-40.037,-428.233	0/0:127:127,0:127:4525:0:0:0,-38.2308,-407.393	0/1:17:2,15:2:72:15:527:-42.2632,0,-1.71921	0/1:17:9,8:9:309:8:288:-21.0552,0,-23.0232	0/1:26:9,17:9:324:17:593:-45.8179,0,-21.6791	0/0:105:105,0:105:3723:0:0:0,-31.6081,-335.123	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.367	0/0:47:47,0:47:1664:0:0:0,-14.1484,-150.039	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.22	0/0:55:55,0:55:1948:0:0:0,-16.5566,-175.505	0/1:41:20,21:20:705:21:748:-54.5772,0,-50.9303	0/1:51:16,35:16:568:35:1247:-96.1838,0,-36.0993	0/1:31:15,16:15:536:16:567:-41.6756,0,-39.2429	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.821	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.137	0/1:10:7,3:7:233:3:108:-7.01025,0,-18.284	0/1:29:15,14:15:502:14:500:-36.0248,0,-36.7659	0/1:87:50,37:50:1781:37:1313:-91.3558,0,-134.379	0/1:63:35,28:35:1256:28:1004:-71.4749,0,-94.3712	0/1:41:11,30:11:392:30:1076:-83.2769,0,-23.2778	0/0:36:36,0:36:1258:0:0:0,-10.8371,-113.514	0/0:28:28,0:28:978:0:0:0,-8.42884,-88.3225	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8103	0/1:188:96,92:96:3378:92:3288:-238.366,0,-247.631	0/0:123:122,1:122:4342:1:36:0,-33.4436,-387.232	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:185:83,102:83:2965:102:3587:-266.006,0,-211.39	0/0:94:94,0:94:3333:0:0:0,-28.2968,-300.167	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.37	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.328	0/1:104:50,54:50:1762:54:1931:-141.164,0,-127.543	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.741	0/1:42:24,18:24:860:18:648:-45.4333,0,-65.0786	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:61:24,37:24:845:37:1320:-100.217,0,-57.9997	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4787	0/0:82:82,0:82:2921:0:0:0,-24.6845,-263.099	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.976	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.352	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.151	0/1:119:65,54:65:2298:54:1936:-138.078,0,-171.235	0/1:73:40,33:40:1425:33:1165:-82.5399,0,-106.566	0/1:100:50,50:50:1777:50:1780:-129.733,0,-130.108	0/1:57:32,25:32:1152:25:881:-62.2545,0,-86.8305	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.487	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1414	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.276	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:14:11,3:11:396:3:108:-5.83962,0,-31.7683	0/0:43:42,1:42:1497:1:36:0,-9.35506,-131.402	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.552	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:139:139,0:139:4954:0:0:0,-41.8432,-445.998	0/1:108:64,44:64:2285:44:1547:-106.243,0,-173.395	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.126	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.447	0/1:41:36,5:36:1280:5:180:-4.00473,0,-103.156	0/1:83:25,58:25:896:58:2076:-161.207,0,-55.9725	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:19:18,1:18:648:1:36:0,-2.1223,-55.0519	0/0:17:16,1:16:564:1:36:0,-1.53446,-47.5069	0/1:79:36,43:36:1266:43:1525:-112.392,0,-90.4491	0/1:53:19,34:19:680:34:1197:-90.9952,0,-45.5503	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.541	0/0:129:129,0:129:4574:0:0:0,-38.8329,-411.8	0/1:91:36,55:36:1292:55:1941:-146.957,0,-88.5376	0/0:64:63,1:63:2264:1:32:0,-16.0745,-200.764	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:63:22,41:22:792:41:1476:-113.827,0,-52.6316	0/1:83:41,42:41:1445:42:1493:-108.893,0,-105.349	0/1:127:70,57:70:2467:57:2023:-142.946,0,-184.042	0/1:32:20,12:20:720:12:432:-29.1643,0,-55.4958	0/1:45:24,21:24:864:21:741:-53.1378,0,-64.4617	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.2243	0/1:62:25,37:25:896:37:1320:-99.2914,0,-62.2941	0/1:11:8,3:8:280:3:104:-6.27942,0,-22.228	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.691	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.586	0/0:25:24,1:24:860:1:36:0,-3.95894,-74.1527	0/1:88:44,44:44:1580:44:1568:-113.999,0,-115.737	0/1:30:11,19:11:388:19:684:-52.4238,0,-26.2218	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.42	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.6
chr01	26171679	.	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chr01	26623675	.	G	A	83556.9	PASS	AB=0.491657;ABP=5.11181;AC=127;AF=0.675532;AN=188;AO=4225;CIGAR=1X;DP=6155;DPB=6155;DPRA=4.19437;EPP=9177.48;EPPR=4185.27;GTI=5;LEN=1;MEANALT=1.03297;MQM=59.9709;MQMR=59.9668;NS=94;NUMALT=1;ODDS=1.07976;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149899;QR=67750;RO=1926;RPL=4225;RPP=9177.48;RPPR=4185.27;RPR=0;RUN=1;SAF=4225;SAP=9177.48;SAR=0;SRF=1926;SRP=4185.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:8,36:8:284:36:1254:-99.9145,0,-12.658	0/1:64:42,22:42:1459:22:784:-51.618,0,-112.335	1/1:82:5,77:5:180:77:2726:-229.028,-8.1324,0	1/1:175:13,162:13:459:162:5771:-477.856,-11.0362,0	0/1:34:23,11:23:801:11:392:-25.385,0,-62.1717	0/1:37:21,16:21:752:16:565:-40.0414,0,-56.8681	0/1:69:33,36:33:1166:36:1277:-94.46,0,-84.4745	0/1:64:8,56:8:280:56:1994:-160.467,0,-6.27338	1/1:39:3,36:3:104:36:1280:-105.799,-2.03736,0	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	1/1:57:5,52:5:161:52:1856:-152.513,-2.35215,0	1/1:70:3,67:3:104:67:2370:-203.853,-11.3693,0	0/1:71:26,45:26:887:45:1608:-123.637,0,-58.7655	0/1:92:54,38:54:1895:38:1356:-94.6457,0,-143.13	0/1:42:26,16:26:911:16:568:-38.8086,0,-69.6617	1/1:46:0,46:0:0:46:1605:-144.735,-13.8474,0	1/1:17:1,16:1:36:16:566:-47.6726,-1.51924,0	0/1:30:10,20:10:351:20:720:-56.0979,0,-22.8958	0/1:24:16,8:16:568:8:284:-18.6786,0,-44.2271	0/1:78:52,26:52:1798:26:927:-60.267,0,-138.615	0/1:109:78,30:78:2748:30:1069:-63.7382,0,-214.78	0/1:74:47,27:47:1671:27:959:-64.3494,0,-128.4	1/1:90:4,85:4:144:85:3043:-260.785,-13.8379,0	1/1:31:1,30:1:36:30:1067:-92.7429,-5.73366,0	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	0/1:129:62,67:62:2158:67:2391:-176.614,0,-155.649	1/1:99:1,98:1:36:98:3492:-310.894,-26.2037,0	1/1:32:1,31:1:36:31:1100:-95.7114,-6.03469,0	0/1:127:73,54:73:2564:54:1919:-134.756,0,-192.779	1/1:115:7,108:7:252:108:3828:-321.689,-11.5895,0	1/1:91:0,91:0:0:91:3211:-289.083,-27.3937,0	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/0:23:22,1:22:784:1:36:0,-3.32541,-67.0576	0/0:25:25,0:25:875:0:0:0,-7.52575,-79.0661	0/1:26:18,8:18:635:8:288:-18.4406,0,-49.6502	0/1:134:70,64:70:2481:64:2269:-164.133,0,-183.135	0/1:140:74,66:74:2592:66:2311:-166.104,0,-191.385	1/1:61:4,57:4:140:57:2030:-170.027,-5.41825,0	0/1:70:27,43:27:946:43:1529:-116.83,0,-64.3808	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:68:40,26:40:1432:26:932:-64.064,0,-109.045	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:117:10,107:10:351:107:3804:-310.632,-3.29384,0	1/1:35:0,35:0:0:35:1240:-111.904,-10.5361,0	1/1:35:3,32:3:108:32:1144:-93.1946,-0.46088,0	1/1:48:1,47:1:36:47:1674:-147.347,-10.8512,0	0/1:70:12,58:12:420:58:2040:-162.798,0,-17.0333	0/1:65:39,26:39:1379:26:924:-63.9107,0,-104.841	0/1:68:34,34:34:1188:34:1212:-88.9163,0,-86.7521	0/1:79:50,29:50:1784:29:1033:-69.5011,0,-137.061	0/1:104:60,44:60:2133:44:1584:-111.544,0,-160.929	0/1:15:11,4:11:368:4:144:-8.79817,0,-28.9257	1/1:90:2,88:2:72:88:3133:-275.358,-20.256,0	0/1:47:5,42:5:176:42:1495:-120.695,0,-2.03661	0/1:13:7,6:7:252:6:203:-14.6878,0,-19.1156	1/1:76:6,70:6:216:70:2477:-203.391,-3.08777,0	0/1:14:2,12:2:68:12:429:-34.7351,0,-2.24329	0/1:13:8,5:8:284:5:165:-11.2608,0,-21.99	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	1/1:103:2,101:2:72:101:3572:-314.851,-24.1694,0	1/1:107:0,107:0:0:107:3779:-340.31,-32.2102,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:126:0,126:0:0:126:4473:-402.741,-37.9298,0	0/1:101:63,38:63:2233:38:1348:-91.2162,0,-170.829	1/1:74:3,71:3:108:71:2500:-215.177,-12.2011,0	0/1:49:7,42:7:248:42:1500:-120.544,0,-7.91372	1/1:62:2,60:2:68:60:2119:-184.519,-12.2062,0	0/1:142:109,33:109:3850:33:1165:-62.4087,0,-303.951	0/1:42:9,33:9:324:33:1174:-93.3241,0,-16.8626	1/1:24:1,23:1:36:23:824:-70.885,-3.62645,0	1/1:39:1,38:1:36:38:1334:-116.759,-8.1419,0	0/1:21:3,18:3:93:18:644:-51.969,0,-2.3551	0/1:143:79,64:79:2770:64:2242:-158.994,0,-206.493	0/1:67:34,33:34:1212:33:1163:-84.8071,0,-89.2173	1/1:126:7,119:7:243:119:4257:-361.101,-15.7223,0	1/1:88:3,85:3:99:85:3015:-262.343,-17.2541,0	0/1:95:47,48:47:1652:48:1690:-123.766,0,-120.367	0/1:82:9,73:9:315:73:2580:-207.765,0,-4.00277	0/1:75:42,33:42:1491:33:1179:-83.84,0,-111.889	0/1:67:37,30:37:1296:30:1063:-75.8095,0,-96.7693	0/1:60:29,31:29:1023:31:1108:-81.9692,0,-74.3199	0/1:78:37,41:37:1297:41:1459:-108.125,0,-93.5488	0/1:42:17,25:17:599:25:884:-67.2351,0,-41.5948	0/1:58:35,23:35:1240:23:824:-57.0236,0,-94.4447	1/1:29:1,28:1:36:28:983:-85.1843,-5.1316,0	0/1:85:42,43:42:1457:43:1532:-112.586,0,-105.832	0/1:14:5,9:5:176:9:320:-24.9279,0,-11.9706	1/1:61:0,61:0:0:61:2148:-193.586,-18.3628,0	1/1:52:0,52:0:0:52:1844:-166.24,-15.6536,0	0/1:62:26,36:26:920:36:1266:-95.5748,0,-64.4532	0/1:121:66,55:66:2275:55:1939:-138.361,0,-168.582	0/1:43:26,17:26:917:17:591:-40.571,0,-69.9003	1/1:120:0,120:0:0:120:4273:-384.749,-36.1236,0	1/1:68:2,66:2:63:66:2318:-202.884,-14.4869,0
chr01	26623771	.	T	C	51948.6	PASS	AB=0.451229;ABP=56.8101;AC=130;AF=0.691489;AN=188;AO=3751;CIGAR=1X;DP=5353;DPB=5353;DPRA=7.4757;EPP=8148.2;EPPR=3468.68;GTI=3;LEN=1;MEANALT=1.05747;MQM=29.2773;MQMR=53.8734;NS=94;NUMALT=1;ODDS=0.877142;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134066;QR=57198;RO=1596;RPL=3751;RPP=8148.2;RPPR=3468.68;RPR=0;RUN=1;SAF=0;SAP=8148.2;SAR=3751;SRF=0;SRP=3468.68;SRR=1596;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:1,16:1:32:16:576:-37.6351,-3.23849,0	0/1:77:48,29:48:1708:29:1036:-48.9129,0,-127.641	1/1:81:6,74:6:216:74:2644:-170.281,-12.5206,0	1/1:87:6,81:6:212:81:2867:-194.733,-13.6835,0	0/1:47:35,12:35:1256:12:432:-15.515,0,-97.832	0/1:34:19,15:19:680:15:536:-26.9034,0,-48.204	0/1:58:39,19:39:1396:19:684:-32.317,0,-107.289	1/1:122:17,103:17:608:103:3665:-218.615,-1.49443,0	1/1:72:2,70:2:72:70:2512:-169.463,-18.0803,0	1/1:81:2,79:2:72:79:2828:-202.164,-20.0536,0	1/1:17:1,16:1:36:16:576:-39.5809,-2.83864,0	1/1:44:3,41:3:93:41:1456:-95.2609,-6.69974,0	0/1:59:28,31:28:1004:31:1112:-59.0862,0,-66.4962	0/1:45:16,29:16:561:29:1040:-58.4592,0,-37.2708	0/1:40:26,14:26:932:14:504:-24.4422,0,-72.1577	1/1:37:2,35:2:72:35:1256:-82.9765,-7.1736,0	1/1:53:3,50:3:108:50:1796:-118.457,-10.6583,0	0/1:41:25,16:25:900:16:576:-27.3327,0,-65.8906	0/1:23:12,11:12:432:11:396:-20.4383,0,-30.7472	0/1:95:50,45:50:1800:45:1601:-87.6399,0,-133.684	0/1:99:62,37:62:2224:37:1324:-61.44,0,-158.941	0/1:66:46,20:46:1652:20:720:-35.4192,0,-124.624	1/1:39:4,35:4:144:35:1260:-83.1452,-3.30837,0	0/1:78:11,67:11:396:67:2400:-141.399,0,-12.5024	1/1:27:2,25:2:72:25:892:-57.7262,-4.1633,0	0/1:172:76,96:76:2732:96:3402:-206.632,0,-194.155	1/1:109:1,108:1:36:108:3880:-265.098,-30.7257,0	1/1:26:0,26:0:0:26:928:-64.1533,-7.82678,0	0/1:111:49,62:49:1760:62:2224:-134.299,0,-120.822	1/1:88:2,86:2:72:86:3080:-209.996,-22.5261,0	1/1:47:2,45:2:72:45:1612:-112.744,-9.81857,0	0/1:7:3,4:3:108:4:144:-7.76764,0,-5.12179	0/0:21:21,0:21:756:0:0:0,-6.32163,-39.4686	0/0:10:10,0:10:360:0:0:0,-3.0103,-17.2129	0/0:6:6,0:6:216:0:0:0,-1.80618,-10.4034	0/1:7:2,5:2:72:5:180:-10.4793,0,-2.77686	0/1:175:106,69:106:3812:69:2472:-129.399,0,-290.578	1/1:109:3,106:3:104:106:3793:-255.973,-27.1701,0	0/1:39:21,18:21:756:18:644:-32.7861,0,-48.9061	0/0:3:3,0:3:108:0:0:0,-0.90309,-5.84244	0/1:60:42,18:42:1512:18:644:-27.2419,0,-118.313	1/1:15:0,15:0:0:15:536:-37.7359,-4.51545,0	1/1:119:4,115:4:144:115:4101:-274.616,-28.1022,0	1/1:53:1,52:1:36:52:1868:-133.082,-13.6757,0	1/1:57:2,55:2:72:55:1957:-137.078,-12.8289,0	1/1:73:3,70:3:108:70:2493:-182.322,-15.0679,0	1/1:64:2,62:2:72:62:2197:-148.188,-15.672,0	0/1:85:50,35:50:1800:35:1256:-65.7352,0,-131.934	0/1:78:51,27:51:1821:27:953:-45.8116,0,-139.499	0/1:89:47,42:47:1688:42:1512:-83.3992,0,-120.114	0/1:80:46,34:46:1618:34:1201:-68.419,0,-115.698	0/0:8:8,0:8:284:0:0:0,-2.40824,-16.6082	1/1:49:0,49:0:0:49:1748:-120.486,-14.7505,0	1/1:14:0,14:0:0:14:504:-37.8263,-4.21442,0	0/1:5:2,3:2:72:3:108:-6.15622,0,-2.08875	1/1:54:5,49:5:180:49:1745:-107.848,-4.45452,0	0/1:9:3,6:3:108:6:216:-12.8564,0,-5.85515	0/0:8:8,0:8:288:0:0:0,-2.40824,-19.6887	0/0:13:12,1:12:428:1:36:0,-0.858852,-30.666	1/1:55:1,54:1:36:54:1906:-129.977,-14.4701,0	1/1:73:0,72:0:0:72:2580:-187.908,-21.6742,0	0/1:4:3,1:3:104:1:36:-1.69864,0,-5.14859	1/1:200:3,197:3:108:197:7044:-522.99,-52.3007,0	0/1:103:63,40:63:2252:40:1421:-72.5598,0,-167.179	1/1:48:4,44:4:144:44:1572:-99.0189,-4.69215,0	1/1:44:0,44:0:0:44:1579:-114.863,-13.2453,0	1/1:83:1,81:1:36:81:2904:-208.823,-22.6206,0	0/1:42:32,10:32:1133:10:356:-13.5156,0,-86.3917	1/1:4:0,4:0:0:4:144:-10.1239,-1.20412,0	1/1:34:3,31:3:108:31:1112:-72.1852,-4.93874,0	1/1:57:2,55:2:72:55:1953:-142.909,-10.322,0	1/1:7:0,7:0:0:7:248:-18.3202,-2.10721,0	0/1:43:15,28:15:536:28:1004:-56.8358,0,-32.5356	0/1:87:41,46:41:1476:46:1656:-88.4633,0,-106.947	1/1:47:0,47:0:0:47:1665:-115.573,-14.1484,0	1/1:50:1,49:1:36:49:1760:-125.298,-12.7726,0	0/1:67:34,33:34:1224:33:1188:-61.9973,0,-88.9331	1/1:77:5,71:5:180:71:2540:-163.585,-10.8809,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.89153	0/1:51:27,24:27:964:24:864:-44.0231,0,-62.3335	0/1:54:22,32:22:788:32:1148:-62.747,0,-51.9015	0/1:116:60,56:60:2148:56:1985:-110.868,0,-153.961	0/1:81:50,31:50:1800:31:1108:-56.5357,0,-135.512	0/1:35:25,10:25:896:10:360:-15.1364,0,-69.4504	1/1:76:1,75:1:36:75:2692:-192.55,-20.5994,0	0/1:110:63,47:63:2264:47:1684:-89.3768,0,-161.539	0/1:26:17,9:17:608:9:324:-14.6101,0,-47.2252	1/1:44:0,44:0:0:44:1568:-109.024,-13.2453,0	1/1:35:1,34:1:36:34:1212:-82.1889,-8.64452,0	0/1:10:5,5:5:180:5:180:-9.57623,0,-13.5418	0/1:29:14,15:14:504:15:540:-28.3215,0,-34.8149	0/1:67:43,24:43:1548:24:860:-42.3366,0,-118.953	1/1:119:1,118:1:36:118:4240:-301.387,-32.2243,0	1/1:72:1,71:1:36:71:2510:-181.26,-19.3953,0
chr01	26637174	.	T	C	15764.4	PASS	AB=0.440789;ABP=81.6976;AC=38;AF=0.202128;AN=188;AO=1142;CIGAR=1X;DP=6332;DPB=6332;DPRA=1.0245;EPP=2482.83;EPPR=11255.6;GTI=1;LEN=1;MEANALT=1;MQM=38.1944;MQMR=59.5998;NS=94;NUMALT=1;ODDS=1.37886;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40794;QR=185289;RO=5190;RPL=0;RPP=2482.83;RPPR=11255.6;RPR=1142;RUN=1;SAF=0;SAP=2482.83;SAR=1142;SRF=0;SRP=11273;SRR=5190;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.232	0/1:62:46,16:46:1639:16:576:-28.1834,0,-129.045	0/0:157:157,0:157:5616:0:0:0,-47.2617,-505.09	0/0:206:206,0:206:7353:0:0:0,-62.0122,-661.76	0/1:37:26,11:26:932:11:396:-22.3234,0,-73.0608	0/1:23:12,11:12:428:11:396:-25.858,0,-31.9174	0/1:44:19,25:19:676:25:892:-62.8804,0,-47.9227	0/0:123:123,0:123:4400:0:0:0,-37.0267,-396.045	0/0:124:124,0:124:4433:0:0:0,-37.3277,-398.751	0/0:86:86,0:86:3041:0:0:0,-25.8886,-273.854	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.98	0/1:57:23,34:23:828:34:1209:-78.4405,0,-57.6678	0/1:31:17,14:17:612:14:489:-32.0184,0,-46.0815	0/1:38:17,21:17:603:21:752:-53.3355,0,-43.1604	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4563	0/1:16:6,10:6:216:10:360:-24.4111,0,-14.974	0/1:17:6,11:6:216:11:396:-27.3441,0,-14.673	0/1:96:58,38:58:2060:38:1359:-87.6406,0,-156.758	0/1:120:66,54:66:2345:54:1940:-125.814,0,-175.184	0/1:88:45,43:45:1616:43:1527:-105.962,0,-119.238	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.551	0/0:107:105,2:105:3748:2:72:0,-25.8525,-331.002	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.233	0/1:188:112,76:112:3966:76:2713:-177.635,0,-300.472	0/0:184:184,0:184:6545:0:0:0,-55.3895,-589.084	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.757	0/1:243:138,105:138:4912:105:3768:-252.463,0,-369.052	0/0:95:95,0:95:3392:0:0:0,-28.5978,-305.431	0/0:83:83,0:83:2976:0:0:0,-24.9855,-267.915	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2566	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.7921	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:138:57,81:57:2040:81:2897:-209.288,0,-142.221	0/0:147:147,0:147:5238:0:0:0,-44.2514,-471.455	0/1:26:9,17:9:324:17:612:-41.578,0,-21.6791	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:81:43,38:43:1525:38:1351:-88.6761,0,-113.095	0/0:14:14,0:14:486:0:0:0,-4.21442,-44.068	0/0:157:157,0:157:5576:0:0:0,-47.2617,-501.932	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5541	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2374	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.474	0/0:107:107,0:107:3817:0:0:0,-32.2102,-343.523	0/1:101:60,41:60:2144:41:1472:-95.726,0,-162.651	0/1:65:38,27:38:1352:27:972:-62.9185,0,-102.411	0/1:64:45,19:45:1603:19:680:-38.5744,0,-125.275	0/1:87:55,32:55:1972:32:1142:-73.0576,0,-151.338	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2146	0/0:153:153,0:153:5500:0:0:0,-46.0576,-495.008	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.161	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.4592	0/0:126:126,0:126:4477:0:0:0,-37.9298,-403.039	0/0:41:40,1:40:1424:1:36:0,-8.91863,-125.034	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:13:10,3:10:356:3:108:-5.83256,0,-28.4679	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.673	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.56	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3073	0/0:169:169,0:169:6020:0:0:0,-50.8741,-541.845	0/1:104:66,38:66:2364:38:1341:-84.0071,0,-181.654	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.686	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.659	0/0:139:139,0:139:4941:0:0:0,-41.8432,-444.81	0/1:99:44,55:44:1576:55:1967:-137.329,0,-112.33	0/1:9:8,1:8:288:1:36:-0.536889,0,-23.5581	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.398	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.203	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0458	0/1:119:74,45:74:2640:45:1601:-91.501,0,-201.936	0/1:52:43,9:43:1521:9:324:-10.9649,0,-121.528	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.902	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.859	0/1:40:31,9:31:1097:9:320:-14.5346,0,-86.9189	0/0:42:42,0:42:1508:0:0:0,-12.6433,-134.633	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:53:36,17:36:1276:17:605:-34.6781,0,-99.1778	0/1:43:26,17:26:924:17:612:-35.6988,0,-70.5253	0/1:130:67,63:67:2404:63:2256:-152.656,0,-177.476	0/1:48:29,19:29:1031:19:654:-40.5736,0,-78.6466	0/1:28:13,15:13:468:15:536:-37.8578,0,-34.0308	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:72:43,29:43:1535:29:1036:-67.0676,0,-116.762	0/1:15:7,8:7:248:8:280:-18.6341,0,-18.1487	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.311	0/0:43:43,0:43:1520:0:0:0,-12.9443,-137.019	0/1:17:6,11:6:216:11:392:-27.8376,0,-14.673	0/1:75:29,46:29:1044:46:1652:-114.549,0,-71.6869	0/1:45:15,30:15:536:30:1067:-77.5822,0,-35.0285	0/0:110:110,0:110:3928:0:0:0,-33.1133,-353.642	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.61
chr01	26637187	.	G	T	16016.4	PASS	AB=0.436426;ABP=94.9509;AC=38;AF=0.202128;AN=188;AO=1147;CIGAR=1X;DP=6456;DPB=6456;DPRA=1.01527;EPP=2433.26;EPPR=11103;GTI=2;LEN=1;MEANALT=1.04878;MQM=38.2502;MQMR=59.6166;NS=94;NUMALT=1;ODDS=0.297925;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40888;QR=189702;RO=5302;RPL=1140;RPP=2433.26;RPPR=11103;RPR=7;RUN=1;SAF=0;SAP=2493.69;SAR=1147;SRF=0;SRP=11516.2;SRR=5302;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:69:68,1:68:2440:1:36:0,-17.1923,-215.041	0/1:64:47,17:47:1671:17:597:-29.5518,0,-131.325	0/0:162:162,0:162:5802:0:0:0,-48.7669,-521.814	0/0:213:213,0:213:7623:0:0:0,-64.1194,-686.037	0/1:37:27,10:27:964:10:356:-19.0703,0,-75.9387	0/1:23:12,11:12:432:11:396:-25.858,0,-32.2798	0/1:45:20,25:20:716:25:896:-62.8529,0,-51.2214	0/0:124:124,0:124:4431:0:0:0,-37.3277,-398.856	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.112	0/0:84:84,0:84:3011:0:0:0,-25.2865,-271.201	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.578	0/1:58:23,35:23:828:35:1256:-81.4245,0,-57.3667	0/1:31:17,14:17:612:14:504:-33.0734,0,-46.0815	0/1:37:17,20:17:608:20:720:-50.8291,0,-43.9139	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0941	0/1:16:6,10:6:216:10:360:-24.4111,0,-14.974	0/1:17:6,11:6:216:11:396:-27.3441,0,-14.673	0/1:98:58,40:58:2080:40:1402:-91.0122,0,-157.957	0/1:124:69,55:69:2453:55:1952:-126.512,0,-183.696	0/1:90:46,44:46:1652:44:1550:-107.306,0,-121.875	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.816	0/0:109:102,2:102:3628:2:72:0,-25.2909,-320.267	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.473	0/1:193:111,82:111:3973:82:2925:-193.286,0,-299.617	0/0:190:190,0:190:6794:0:0:0,-57.1957,-611.492	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3566	0/1:247:140,107:140:4997:107:3791:-253.585,0,-374.217	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.187	0/0:86:86,0:86:3083:0:0:0,-25.8886,-277.608	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4844	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.7921	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:139:58,81:58:2076:81:2897:-208.987,0,-145.16	0/0:152:152,0:152:5442:0:0:0,-45.7566,-489.806	0/1:25:10,15:10:360:15:540:-36.0354,0,-25.2186	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:82:45,37:45:1608:37:1313:-84.3429,0,-120.263	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:160:160,0:160:5732:0:0:0,-48.1648,-515.953	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7859	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4759	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.721	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.803	0/1:103:62,41:62:2228:41:1453:-93.827,0,-169.602	0/1:67:40,27:40:1428:27:972:-63.4547,0,-108.646	0/1:65:46,19:46:1644:19:684:-38.5473,0,-128.667	0/1:86:55,31:55:1972:31:1112:-70.7264,0,-151.866	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9132	0/0:158:158,0:158:5657:0:0:0,-47.5627,-509.127	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.919	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8204	0/0:129:129,0:129:4619:0:0:0,-38.8329,-415.812	0/0:43:42,1:42:1484:1:36:0,-9.52069,-130.428	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:15:12,3:12:432:3:108:-5.2305,0,-34.7057	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.15	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.913	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5458	0/0:172:172,0:172:6139:0:0:0,-51.7772,-552.551	0/1:104:68,35:68:2428:35:1252:-75.7871,0,-187.347	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.68	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.948	0/0:144:144,0:144:5172:0:0:0,-43.3483,-465.586	0/1:100:46,54:46:1640:54:1895:-131.625,0,-117.786	0/1:9:8,1:8:288:1:36:-0.536889,0,-23.5581	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.821	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.892	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0458	0/1:121:75,46:75:2688:46:1637:-93.0217,0,-205.669	0/1:53:44,9:44:1572:9:320:-10.4612,0,-125.816	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.617	0/0:90:90,0:90:3215:0:0:0,-27.0927,-289.52	0/1:40:31,9:31:1108:9:320:-14.5346,0,-87.9118	0/0:41:40,0:40:1420:0:0:0,-12.0412,-127.74	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:51:36,15:36:1284:15:532:-28.8766,0,-100.5	0/1:42:26,16:26:920:16:576:-33.8685,0,-70.4553	0/1:132:68,64:68:2425:64:2292:-154.978,0,-178.759	0/1:48:29,19:29:1044:19:684:-42.5348,0,-79.8188	0/1:29:13,16:13:468:16:572:-40.6382,0,-33.7298	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:74:45,29:45:1607:29:1040:-66.7053,0,-122.637	0/1:14:7,7:7:252:7:252:-16.449,0,-18.8145	0/0:41:41,0:41:1464:0:0:0,-12.3422,-131.951	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.303	0/1:18:7,11:7:252:11:396:-27.7778,0,-17.6104	0/1:77:30,47:30:1076:47:1680:-116.479,0,-73.9629	0/1:45:15,30:15:536:30:1080:-78.5332,0,-35.0285	0/0:110:110,0:110:3939:0:0:0,-33.1133,-354.639	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.733
chr01	26639341	.	C	T	101063	PASS	AB=0.514003;ABP=7.14576;AC=151;AF=0.803191;AN=188;AO=4707;CIGAR=1X;DP=5896;DPB=5896;DPRA=0;EPP=10206.8;EPPR=2567.55;GTI=0;LEN=1;MEANALT=1;MQM=59.1137;MQMR=59.8898;NS=94;NUMALT=1;ODDS=4.36868;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168292;QR=42383;RO=1189;RPL=2;RPP=10206.8;RPPR=2567.55;RPR=4705;RUN=1;SAF=4707;SAP=10224.1;SAR=0;SRF=1189;SRP=2584.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1775:-159.968,-15.0515,0	0/1:59:24,35:24:834:35:1252:-95.1783,0,-57.6123	1/1:361:2,359:2:72:359:12843:-1147.91,-101.835,0	1/1:173:0,173:0:0:173:6159:-554.169,-52.0782,0	0/1:35:9,26:9:324:26:921:-72.6692,0,-18.9698	0/1:34:11,23:11:388:23:824:-64.2307,0,-24.9758	0/1:76:52,24:52:1841:24:860:-54.8188,0,-143.09	1/1:104:0,104:0:0:104:3719:-334.035,-31.3071,0	1/1:38:0,38:0:0:38:1364:-123.032,-11.4391,0	1/1:51:0,51:0:0:51:1832:-165.038,-15.3525,0	1/1:38:0,38:0:0:38:1364:-123.058,-11.4391,0	1/1:54:0,54:0:0:54:1936:-174.354,-16.2556,0	0/1:44:18,26:18:648:26:932:-70.9535,0,-45.4066	0/1:35:22,13:22:784:13:468:-31.922,0,-60.3479	0/1:38:21,17:21:752:17:608:-43.6129,0,-56.5671	1/1:40:0,40:0:0:40:1431:-128.141,-12.0412,0	1/1:39:0,39:0:0:39:1400:-126.226,-11.7402,0	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8782	0/1:82:38,44:38:1368:44:1580:-117.805,0,-98.734	0/1:79:30,49:30:1055:49:1733:-132.461,0,-71.3914	0/1:21:9,12:9:307:12:428:-32.5372,0,-21.6386	1/1:35:1,34:1:36:34:1224:-106.869,-6.93778,0	1/1:63:1,62:1:36:62:2198:-194.375,-15.3666,0	1/1:71:0,71:0:0:71:2536:-227.988,-21.3731,0	0/1:109:56,53:56:1996:53:1904:-138.669,0,-147.094	1/1:252:0,252:0:0:252:9040:-812.269,-75.8596,0	1/1:24:0,24:0:0:24:860:-77.6866,-7.22472,0	0/1:196:90,106:90:3205:106:3808:-283.757,0,-229.671	1/1:108:0,108:0:0:108:3825:-343.602,-32.5112,0	1/1:30:0,30:0:0:30:1069:-96.3861,-9.0309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:356:-32.3635,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:14:0,14:0:0:14:500:-45.3113,-4.21442,0	0/1:91:45,46:45:1620:46:1644:-120.704,0,-118.696	1/1:97:0,97:0:0:97:3437:-309.5,-29.1999,0	0/1:32:13,19:13:468:19:671:-51.0652,0,-32.8267	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:80:31,49:31:1112:49:1756:-133.843,0,-76.2731	1/1:12:0,12:0:0:12:432:-39.2035,-3.61236,0	1/1:119:0,119:0:0:119:4237:-381.307,-35.8226,0	1/1:30:0,30:0:0:30:1080:-97.3834,-9.0309,0	1/1:36:0,36:0:0:36:1288:-116.198,-10.8371,0	1/1:60:0,60:0:0:60:2156:-193.848,-18.0618,0	1/1:104:0,104:0:0:104:3728:-335.53,-31.3071,0	0/1:116:70,46:70:2504:46:1656:-114.382,0,-190.686	0/1:43:17,26:17:604:26:932:-71.2369,0,-41.7463	0/1:98:52,46:52:1860:46:1648:-119.083,0,-138.177	0/1:71:25,46:25:887:46:1637:-125.786,0,-58.775	1/1:5:0,5:0:0:5:180:-16.5268,-1.50515,0	1/1:116:0,116:0:0:116:4151:-373.641,-34.9195,0	1/1:40:0,40:0:0:40:1436:-129.38,-12.0412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:118:0,118:0:0:118:4204:-378.371,-35.5215,0	1/1:24:0,24:0:0:24:864:-78.0092,-7.22472,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:10:5,5:5:180:5:180:-13.4936,0,-13.5418	1/1:104:0,104:0:0:104:3704:-333.167,-31.3071,0	1/1:70:1,69:1:36:69:2476:-219.399,-17.4738,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:91:0,91:0:0:91:3257:-293.288,-27.3937,0	0/1:125:46,79:46:1622:79:2832:-217.395,0,-108.639	1/1:57:0,57:0:0:57:2020:-181.972,-17.1587,0	1/1:82:0,82:0:0:82:2948:-265.483,-24.6845,0	1/1:63:3,60:3:108:60:2140:-182.167,-8.88972,0	0/1:157:108,49:108:3847:49:1760:-111.344,0,-299.165	1/1:28:0,28:0:0:28:999:-90.2222,-8.42884,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:29:1,28:1:36:28:1000:-85.9553,-5.1316,0	1/1:23:0,23:0:0:23:824:-74.4824,-6.92369,0	0/1:129:65,64:65:2320:64:2261:-164.864,0,-170.227	0/1:52:27,25:27:964:25:892:-64.9099,0,-71.4233	1/1:98:0,98:0:0:98:3528:-316.615,-29.5009,0	1/1:138:0,138:0:0:138:4948:-444.93,-41.5421,0	0/1:109:47,62:47:1676:62:2212:-166.529,0,-118.287	1/1:82:0,82:0:0:82:2924:-262.556,-24.6845,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:73:29,44:29:1031:44:1572:-119.475,0,-71.1274	0/1:91:38,53:38:1360:53:1908:-144.604,0,-95.3069	0/1:74:30,44:30:1076:44:1580:-120.055,0,-74.8766	0/1:23:9,14:9:324:14:491:-37.5974,0,-22.5822	0/1:35:18,17:18:639:17:612:-44.8774,0,-47.3022	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:48:19,29:19:684:29:1032:-78.6255,0,-47.4409	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:41:0,41:0:0:41:1462:-130.79,-12.3422,0	1/1:36:0,36:0:0:36:1292:-116.555,-10.8371,0	0/1:24:17,7:17:604:7:252:-15.5737,0,-47.4659	0/1:73:46,27:46:1639:27:972:-65.8212,0,-125.778	0/1:25:16,9:16:572:9:324:-21.9397,0,-44.2877	1/1:91:0,91:0:0:91:3224:-290.134,-27.3937,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0
chr01	26749771	.	C	A	92472.4	PASS	AB=0.425704;ABP=139.174;AC=144;AF=0.765957;AN=188;AO=4507;CIGAR=1X;DP=7270;DPB=7270;DPRA=0;EPP=9789.84;EPPR=5974.56;GTI=11;LEN=1;MEANALT=1.08511;MQM=59.9687;MQMR=59.996;NS=94;NUMALT=1;ODDS=0.224527;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159668;QR=98027;RO=2750;RPL=0;RPP=9789.84;RPPR=5974.56;RPR=4507;RUN=1;SAF=0;SAP=9789.84;SAR=4507;SRF=0;SRP=5974.56;SRR=2750;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	0/1:43:14,29:14:504:29:1032:-80.2492,0,-32.7538	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	1/1:167:0,167:0:0:167:5939:-534.62,-50.272,0	0/1:61:39,22:39:1383:22:788:-52.882,0,-106.405	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:53:27,26:27:949:26:927:-67.7928,0,-69.7682	1/1:98:0,98:0:0:98:3455:-311.15,-29.5009,0	1/1:28:0,28:0:0:28:985:-88.9615,-8.42884,0	1/1:78:1,77:1:36:77:2731:-242.433,-19.8821,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:63:0,63:0:0:63:2233:-201.224,-18.9649,0	0/1:31:9,22:9:324:22:783:-61.461,0,-20.1739	0/1:21:9,12:9:316:12:428:-32.5372,0,-22.4572	0/1:28:4,24:4:144:24:864:-69.6537,0,-4.88478	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:53:38,15:38:1355:15:527:-31.8056,0,-106.295	0/1:105:50,55:50:1787:55:1959:-144.977,0,-129.504	0/1:68:42,26:42:1496:26:909:-61.6534,0,-114.465	0/1:56:43,13:43:1536:13:456:-24.5156,0,-121.675	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:39:0,39:0:0:39:1372:-123.776,-11.7402,0	1/1:94:0,94:0:0:94:3334:-300.272,-28.2968,0	0/1:202:112,90:112:4001:90:3183:-225.887,0,-299.47	1/1:469:0,469:0:0:469:16547:-1488.92,-141.183,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:270:159,106:159:5703:106:3761:-258.558,0,-433.236	1/1:131:0,131:0:0:131:4631:-416.948,-39.4349,0	1/1:65:0,65:0:0:65:2304:-207.619,-19.567,0	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:21:0,21:0:0:21:742:-67.103,-6.32163,0	0/0:467:459,7:459:16362:7:252:0,-117.611,-1449.23	1/1:7:0,7:0:0:7:239:-21.8427,-2.10721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:65:18,47:18:639:47:1654:-129.58,0,-38.2713	1/1:122:0,122:0:0:122:4317:-388.707,-36.7257,0	0/1:50:37,13:37:1324:13:451:-25.8675,0,-104.411	0/0:337:334,3:334:11855:3:104:0,-91.7443,-1057.11	0/1:85:52,33:52:1863:33:1175:-80.4694,0,-142.361	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	1/1:96:0,96:0:0:96:3359:-302.525,-28.8989,0	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	1/1:39:0,39:0:0:39:1370:-123.597,-11.7402,0	1/1:61:0,61:0:0:61:2138:-192.683,-18.3628,0	1/1:55:0,55:0:0:55:1938:-174.693,-16.5567,0	0/1:155:75,80:75:2681:80:2841:-209.268,0,-194.874	0/1:82:59,23:59:2093:23:824:-49.7989,0,-163.954	0/1:111:52,59:52:1868:59:2101:-155.943,0,-134.985	0/1:94:44,50:44:1563:50:1784:-132.546,0,-112.664	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:40:0,40:0:0:40:1407:-126.925,-12.0412,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:93:0,92:0:0:92:3233:-290.872,-27.6948,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/0:336:331,5:331:11786:5:165:0,-85.9725,-1045.44	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0	1/1:58:1,56:1:36:56:1962:-173.254,-13.9203,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:166:0,166:0:0:166:5898:-530.93,-49.971,0	0/1:154:102,52:102:3644:52:1848:-120.241,0,-281.807	1/1:95:0,95:0:0:95:3348:-301.537,-28.5979,0	1/1:69:0,69:0:0:69:2463:-221.924,-20.7711,0	1/1:86:1,85:1:36:85:3028:-269.153,-22.2903,0	0/1:98:73,25:73:2620:25:862:-48.1611,0,-206.546	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:41:0,41:0:0:41:1449:-130.704,-12.3422,0	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	0/1:102:70,32:70:2512:32:1132:-71.4835,0,-195.627	0/1:54:17,37:17:608:37:1328:-103.567,0,-38.7964	1/1:94:0,94:0:0:94:3335:-300.367,-28.2968,0	1/1:108:0,108:0:0:108:3859:-347.505,-32.5112,0	0/1:110:63,47:63:2264:47:1688:-119.094,0,-170.909	1/1:88:0,88:0:0:88:3143:-283.095,-26.4906,0	1/1:28:0,28:0:0:28:976:-87.7786,-8.42884,0	0/1:63:33,30:33:1171:30:1068:-77.4672,0,-86.7318	0/1:105:65,40:65:2316:40:1432:-97.5694,0,-177.093	0/1:126:71,53:71:2535:53:1892:-132.871,0,-190.713	0/1:28:8,20:8:288:20:708:-55.6168,0,-17.8386	0/1:25:12,12:12:428:12:432:-31.6366,0,-31.2745	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:49:10,39:10:356:39:1404:-111.909,0,-17.6308	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:38:0,38:0:0:38:1333:-120.268,-11.4391,0	1/1:35:0,33:0:0:33:1158:-104.165,-9.93399,0	0/1:66:53,13:53:1877:13:460:-21.8674,0,-149.339	0/1:179:143,36:143:5052:36:1249:-58.8226,0,-400.946	0/1:18:9,9:9:320:9:320:-23.7238,0,-23.7238	1/1:83:0,83:0:0:83:2935:-264.386,-24.9855,0	1/1:47:0,47:0:0:47:1635:-147.435,-14.1484,0
chr01	26749888	.	G	A	115112	PASS	AB=0.554321;ABP=86.0517;AC=147;AF=0.781915;AN=188;AO=5413;CIGAR=1X;DP=6864;DPB=6864;DPRA=73.7957;EPP=11757.2;EPPR=3142.96;GTI=2;LEN=1;MEANALT=1.05376;MQM=59.9884;MQMR=59.9986;NS=94;NUMALT=1;ODDS=1.10878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193628;QR=51450;RO=1446;RPL=5413;RPP=11757.2;RPPR=3142.96;RPR=0;RUN=1;SAF=5413;SAP=11757.2;SAR=0;SRF=1446;SRP=3142.96;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:114:40,74:40:1440:74:2637:-203.258,0,-95.5803	1/1:137:0,137:0:0:137:4904:-441.512,-41.2411,0	1/1:114:1,113:1:36:113:4044:-360.55,-30.7191,0	0/1:58:28,30:28:991:30:1076:-79.6931,0,-72.0438	0/1:38:8,30:8:275:30:1080:-86.0741,0,-13.6443	0/1:104:53,50:53:1887:50:1792:-130.343,0,-138.889	1/1:152:0,152:0:0:152:5436:-489.314,-45.7566,0	1/1:81:1,80:1:36:80:2863:-254.309,-20.7852,0	1/1:70:0,70:0:0:70:2488:-224.174,-21.0721,0	1/1:67:0,67:0:0:67:2379:-214.366,-20.169,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:53:14,39:14:496:39:1388:-109.264,0,-29.0197	0/1:39:8,31:8:284:31:1097:-87.2978,0,-14.1632	0/1:28:8,20:8:288:20:712:-55.9778,0,-17.8386	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:59:0,59:0:0:59:2115:-190.618,-17.7608,0	0/1:20:4,16:4:144:16:568:-45.4313,0,-7.29302	0/1:27:12,15:12:428:15:540:-40.8087,0,-30.731	0/1:98:56,42:56:1982:42:1504:-106.154,0,-149.15	0/1:110:50,60:50:1780:60:2152:-160.834,0,-127.37	0/1:148:97,51:97:3445:51:1818:-119.349,0,-265.711	1/1:70:0,70:0:0:70:2484:-223.812,-21.0721,0	0/1:80:11,69:11:396:69:2437:-195.5,0,-11.9003	1/1:62:0,62:0:0:62:2213:-199.433,-18.6639,0	0/1:210:119,91:119:4205:91:3244:-228.963,0,-315.416	1/1:177:0,177:0:0:177:6327:-569.522,-53.2823,0	1/1:28:0,28:0:0:28:993:-89.6825,-8.42884,0	0/1:219:105,114:105:3743:114:4075:-301.011,0,-271.145	1/1:88:0,88:0:0:88:3140:-282.827,-26.4906,0	1/1:67:0,67:0:0:67:2398:-216.076,-20.169,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:89:29,59:29:1022:59:2116:-163.858,0,-65.4407	1/1:159:0,159:0:0:159:5702:-513.296,-47.8638,0	0/1:40:10,30:10:360:30:1068:-84.3909,0,-20.7031	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:57:26,31:26:936:31:1116:-83.593,0,-67.4008	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:125:0,125:0:0:125:4456:-401.21,-37.6288,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:88:0,88:0:0:88:3129:-281.836,-26.4906,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:141:85,56:85:3016:56:2008:-138.548,0,-229.225	0/1:125:48,77:48:1701:77:2768:-211.732,0,-115.745	0/1:110:51,58:51:1820:58:2069:-153.307,0,-130.909	0/1:178:90,88:90:3183:88:3152:-230.322,0,-233.11	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:101:1,100:1:36:100:3580:-318.809,-26.8058,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:12:0,12:0:0:12:413:-37.4978,-3.61236,0	1/1:104:0,104:0:0:104:3732:-336.08,-31.3071,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:150:0,150:0:0:150:5359:-482.387,-45.1545,0	0/1:164:81,83:81:2878:83:2984:-219.422,0,-209.888	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:66:0,66:0:0:66:2367:-213.287,-19.868,0	1/1:104:1,102:1:36:102:3648:-324.926,-27.7676,0	0/1:89:68,21:68:2420:21:756:-41.5756,0,-191.265	1/1:24:1,23:1:36:23:828:-71.2458,-3.62645,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:21:0,21:0:0:21:737:-66.6506,-6.32163,0	0/1:97:44,53:44:1556:53:1896:-141.718,0,-111.132	0/1:41:7,34:7:252:34:1216:-97.4043,0,-10.6867	1/1:163:0,163:0:0:163:5835:-524.945,-49.0679,0	1/1:156:0,156:0:0:156:5589:-503.13,-46.9607,0	0/1:93:44,48:44:1576:48:1692:-124.509,0,-114.077	1/1:99:0,99:0:0:99:3544:-319.169,-29.802,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:82:19,63:19:684:63:2252:-178.259,0,-37.2059	0/1:77:35,42:35:1247:42:1504:-112.475,0,-89.3548	0/1:211:113,98:113:4044:98:3520:-253.491,0,-300.631	0/1:52:14,38:14:491:38:1368:-107.767,0,-28.8676	0/1:30:5,25:5:180:25:900:-72.2901,0,-7.52116	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:74:18,56:18:648:56:2008:-158.717,0,-36.3757	0/1:22:9,13:9:324:13:464:-35.4748,0,-22.8832	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:30:4,26:4:144:26:925:-74.5365,0,-4.28272	0/1:47:13,34:13:468:34:1211:-95.1471,0,-28.3112	0/1:25:9,16:9:320:16:568:-43.9261,0,-21.6166	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0
chr01	26750005	.	A	G	114448	PASS	AB=0.526055;ABP=20.8891;AC=147;AF=0.781915;AN=188;AO=5373;CIGAR=1X;DP=6835;DPB=6835;DPRA=29.6957;EPP=11557.7;EPPR=3153.82;GTI=0;LEN=1;MEANALT=1.06522;MQM=59.7353;MQMR=59.9876;NS=94;NUMALT=1;ODDS=1.16298;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191297;QR=51784;RO=1455;RPL=5359;RPP=11549;RPPR=3153.82;RPR=14;RUN=1;SAF=1;SAP=11661.6;SAR=5372;SRF=0;SRP=3162.5;SRR=1455;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:923:-83.3868,-7.82678,0	0/1:104:52,52:52:1856:52:1846:-135.112,0,-136.013	1/1:128:4,123:4:144:123:4385:-381.51,-25.277,0	1/1:143:1,141:1:36:141:4999:-446.451,-39.5078,0	0/1:50:33,17:33:1172:17:604:-39.5819,0,-90.7314	0/1:45:26,19:26:920:19:668:-46.8993,0,-69.5707	0/1:126:58,68:58:2065:68:2424:-180.486,0,-148.189	1/1:67:0,67:0:0:67:2393:-215.008,-20.169,0	1/1:77:0,77:0:0:77:2743:-246.921,-23.1793,0	1/1:27:0,27:0:0:27:948:-85.6319,-8.12781,0	1/1:43:1,42:1:36:42:1494:-131.152,-9.34602,0	1/1:69:0,69:0:0:69:2438:-219.657,-20.7711,0	0/1:35:9,26:9:324:26:928:-73.3022,0,-18.9698	0/1:47:13,34:13:455:34:1224:-96.314,0,-27.1335	0/1:33:6,27:6:216:27:968:-77.5018,0,-9.85652	1/1:47:0,47:0:0:47:1682:-151.665,-14.1484,0	1/1:46:0,46:0:0:46:1636:-147.529,-13.8474,0	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.5032	0/1:17:3,14:3:108:14:504:-40.5806,0,-4.95766	0/1:104:55,49:55:1945:49:1740:-125.572,0,-144.017	0/1:90:39,51:39:1400:51:1811:-136.009,0,-99.2065	0/1:109:75,34:75:2680:34:1220:-77.2945,0,-208.633	1/1:68:0,68:0:0:68:2417:-217.784,-20.47,0	1/1:72:2,70:2:72:70:2488:-217.337,-14.8374,0	1/1:46:0,46:0:0:46:1643:-148.028,-13.8474,0	0/1:196:107,89:107:3798:89:3174:-226.772,0,-283.015	1/1:133:0,131:0:0:131:4628:-414.049,-39.4349,0	1/1:26:0,26:0:0:26:918:-82.9353,-7.82678,0	0/1:256:125,131:125:4438:131:4667:-343.038,0,-322.528	1/1:129:0,129:0:0:129:4623:-416.21,-38.8329,0	1/1:110:0,110:0:0:110:3907:-351.737,-33.1133,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:11:0,11:0:0:11:396:-35.7912,-3.31133,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:8:0,8:0:0:8:277:-25.2644,-2.40824,0	0/1:91:15,76:15:536:76:2719:-217.56,0,-21.1811	1/1:138:0,138:0:0:138:4905:-441.308,-41.5421,0	0/1:35:10,25:10:356:25:896:-70.4228,0,-21.8452	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:130:77,53:77:2745:53:1865:-128.991,0,-208.154	1/1:31:0,31:0:0:31:1092:-98.4943,-9.33193,0	1/1:95:0,94:0:0:94:3334:-299.829,-28.2968,0	1/1:109:0,109:0:0:109:3883:-349.618,-32.8123,0	1/1:67:0,67:0:0:67:2371:-213.61,-20.169,0	1/1:105:0,105:0:0:105:3738:-336.617,-31.6082,0	1/1:83:2,81:2:72:81:2900:-254.1,-18.1488,0	0/1:147:77,70:77:2759:70:2487:-179.832,0,-204.299	0/1:89:52,37:52:1860:37:1315:-91.8594,0,-140.886	0/1:97:54,43:54:1917:43:1536:-109.329,0,-143.605	0/1:157:93,64:93:3279:64:2287:-158.821,0,-248.066	1/1:8:0,8:0:0:8:275:-25.0827,-2.40824,0	1/1:111:0,111:0:0:111:3954:-355.776,-33.4143,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:104:0,103:0:0:103:3663:-329.063,-31.0061,0	1/1:47:0,47:0:0:47:1680:-151.481,-14.1484,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	1/1:32:1,31:1:36:31:1116:-97.1453,-6.03469,0	1/1:121:0,121:0:0:121:4318:-388.796,-36.4246,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:149:0,149:0:0:149:5330:-479.824,-44.8535,0	0/1:141:68,73:68:2397:73:2591:-190.364,0,-173.539	1/1:48:0,48:0:0:48:1704:-153.643,-14.4494,0	1/1:62:0,61:0:0:61:2162:-194.351,-18.3628,0	1/1:353:2,351:2:68:351:12453:-1113.57,-99.8059,0	0/1:57:30,27:30:1076:27:956:-69.197,0,-79.9941	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:72:0,72:0:0:72:2553:-229.65,-21.6742,0	1/1:63:0,63:0:0:63:2241:-201.946,-18.9649,0	1/1:23:0,23:0:0:23:799:-71.6636,-6.92369,0	0/1:91:54,37:54:1923:37:1319:-91.6092,0,-145.953	0/1:23:4,19:4:144:19:680:-54.6055,0,-6.38993	1/1:115:0,115:0:0:115:4106:-369.592,-34.6185,0	1/1:117:0,117:0:0:117:4174:-375.842,-35.2205,0	0/1:72:37,35:37:1324:35:1256:-90.7244,0,-97.7879	1/1:67:0,67:0:0:67:2404:-216.6,-20.169,0	1/1:5:0,5:0:0:5:180:-16.5437,-1.50515,0	0/1:91:52,39:52:1853:39:1390:-98.0044,0,-139.654	0/1:81:45,36:45:1582:36:1292:-92.1922,0,-118.283	0/1:122:56,66:56:2008:66:2360:-175.933,0,-144.268	0/1:67:16,51:16:572:51:1814:-143.371,0,-31.6444	0/1:42:15,27:15:536:27:963:-74.3427,0,-35.9316	1/1:75:0,75:0:0:75:2677:-241.175,-22.5773,0	0/1:89:20,69:20:716:69:2437:-192.792,0,-37.976	0/1:29:7,22:7:248:22:779:-61.6858,0,-13.9343	1/1:73:0,73:0:0:73:2617:-235.761,-21.9752,0	1/1:60:0,60:0:0:60:2126:-191.607,-18.0618,0	0/1:34:9,25:9:320:25:896:-70.7172,0,-18.9073	0/1:59:15,44:15:536:44:1572:-124.008,0,-30.814	0/1:36:11,25:11:392:25:900:-70.4839,0,-24.783	1/1:42:0,42:0:0:42:1493:-134.662,-12.6433,0	1/1:85:0,85:0:0:85:3043:-274.094,-25.5876,0
chr01	26760179	.	ATTTTTTTTTTGTTTGTGGTTAG	ATTTTTTTTTTGGTTTGTGGTTAG,ATTTTTTTTTGGTTTGTGGTTAG	146373	PASS	AB=0.641901,0.299838;ABP=1191.79,2368.35;AC=109,77;AF=0.586022,0.413978;AN=186;AO=5252,2116;CIGAR=11M1I12M,10M1X12M;DP=7822;DPB=8072.57;DPRA=0,16.6732;EPP=11312.2,4554.52;EPPR=7.35324;GTI=10;LEN=1,1;MEANALT=4.6129,4.88372;MQM=59.8797,58.5728;MQMR=60;NS=93;NUMALT=2;ODDS=6193.61;PAIRED=0,0;PAIREDR=0;PAO=0.666667,0.666667;PQA=20.3333,20.3333;PQR=20.3333;PRO=0.666667;QA=184830,75441;QR=70;RO=2;RPL=11,5;RPP=11312.2,4554.52;RPPR=7.35324;RPR=5241,2111;RUN=1,1;SAF=5252,2116;SAP=11407.6,4597.85;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=ins,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:52:0,40,7:0:0:40,7:1397,252:-134.195,-20.5666,-8.52539,-113.632,0,-111.525	1/2:74:0,40,31:0:0:40,31:1377,1116:-202.949,-91.1176,-79.0764,-111.881,0,-102.549	1/2:127:0,97,22:0:0:97,22:3380,769:-337.4,-62.5595,-33.3596,-274.844,0,-268.221	1/2:278:0,234,39:0:0:234,39:8255,1396:-785.995,-113.876,-43.4355,-672.153,0,-660.413	1/2:52:0,39,11:0:0:39,11:1364,396:-143.281,-32.3223,-20.5821,-110.967,0,-107.656	1/2:19:0,10,9:0:0:10,9:352,324:-55.4484,-26.7966,-23.7863,-29.0079,0,-26.2986	1/2:50:0,18,32:0:0:18,32:640,1148:-146.038,-93.8839,-88.4653,-52.5108,0,-42.8778	1/2:215:0,174,25:0:0:174,25:6132,873:-570.27,-71.0245,-18.6453,-499.261,0,-491.735	1/2:86:0,71,10:0:0:71,10:2466,356:-229.483,-29.0178,-7.64467,-200.467,0,-197.456	1/2:74:0,58,12:0:0:58,12:2034,428:-200.429,-34.9099,-17.4502,-165.538,0,-161.926	1/2:32:0,27,3:0:0:27,3:964,108:-87.4218,-8.825,-0.697187,-78.6092,0,-77.7061	1/2:67:0,55,9:0:0:55,9:1930,324:-183.513,-26.4492,-9.89257,-157.075,0,-154.366	1/2:64:0,25,33:0:0:25,33:896,1176:-168.952,-95.8733,-88.3475,-73.093,0,-63.159	1/2:60:0,17,37:0:0:17,37:604,1328:-157.589,-108.37,-103.253,-49.2539,0,-38.1158	1/2:56:0,22,30:0:0:22,30:775,1072:-150.458,-87.3635,-80.7408,-63.0963,0,-54.0654	1/2:39:0,31,5:0:0:31,5:1103,180:-104.607,-14.7079,-5.37594,-89.9187,0,-88.4136	1/2:37:0,32,4:0:0:32,4:1136,144:-104.345,-11.7816,-2.14868,-92.595,0,-91.3909	1/2:23:0,3,17:0:0:3,17:108,604:-58.046,-49.2328,-48.3297,-8.82332,0,-3.70581	1/2:14:0,4,9:0:0:4,9:136,324:-37.4626,-26.4368,-25.2326,-11.0156,0,-8.30631	1/2:237:0,120,99:0:0:120,99:4239,3544:-634.119,-288.908,-252.784,-345.227,0,-315.425	1/2:113:0,59,48:0:0:59,48:2100,1704:-309.998,-138.844,-121.084,-171.157,0,-156.708	1/2:107:0,45,47:0:0:45,47:1592,1639:-262.802,-133.194,-119.647,-129.612,0,-115.463	1/2:130:0,98,21:0:0:98,21:3442,741:-340.492,-60.3464,-30.8455,-280.154,0,-273.832	1/2:53:0,46,7:0:0:46,7:1640,240:-153.524,-19.8275,-5.98007,-134.041,0,-131.934	1/1:79:0,69,7:0:0:69,7:2411,244:-216.579,-20.7711,0,-196.735,-0.896927,-194.628	1/2:216:0,111,93:0:0:111,93:3870,3317:-584.764,-270.163,-236.749,-314.609,0,-286.613	1/2:203:0,171,19:0:0:171,19:6030,676:-546.082,-55.0981,-3.62192,-490.989,0,-485.27	1/2:20:0,16,3:0:0:16,3:533,108:-51.9248,-8.81225,-3.99577,-43.1087,0,-42.2056	1/2:241:0,133,96:0:0:133,96:4728,3444:-665.937,-280.73,-240.693,-385.216,0,-356.317	1/1:180:0,155,15:0:0:155,15:5456,540:-490.814,-46.6597,0,-446.752,-2.59352,-442.237	1/2:110:0,87,11:0:0:87,11:3050,377:-278.809,-30.6085,-4.4189,-248.205,0,-244.894	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:9:0,4,4:0:0:4,4:135,144:-22.6807,-11.7497,-10.5455,-10.9231,0,-9.71894	.:.:.:.:.:.:.:.	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:145:0,50,86:0:0:50,86:1772,3088:-396.017,-251.662,-236.61,-144.361,0,-118.473	1/1:96:0,83,6:0:0:83,6:2911,212:-261.863,-24.9855,0,-244.597,-7.71523,-242.791	1/2:26:0,7,17:0:0:7,17:244,612:-69.8321,-49.9897,-47.8825,-19.8815,0,-14.764	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:134:0,73,50:0:0:73,50:2536,1775:-350.819,-144.65,-122.675,-206.189,0,-191.138	1/1:13:0,11,0:0:0:11,0:392,0:-35.2988,-3.31133,0,-35.2988,-3.31133,-35.2988	1/2:202:0,165,24:0:0:165,24:5775,864:-540.35,-70.506,-20.8361,-469.851,0,-462.627	1/2:51:0,41,7:0:0:41,7:1451,252:-138.768,-20.5782,-8.23599,-118.205,0,-116.098	1/2:51:0,41,7:0:0:41,7:1444,248:-137.767,-20.2104,-7.86818,-117.564,0,-115.456	1/1:75:0,66,6:0:0:66,6:2299,201:-206.824,-19.868,0,-190.549,-3.60854,-188.743	1/2:119:0,95,19:0:0:95,19:3354,672:-327.782,-54.7351,-26.1372,-273.048,0,-267.328	1/2:161:0,82,71:0:0:82,71:2891,2544:-442.813,-207.426,-182.742,-235.403,0,-214.03	1/2:52:0,23,28:0:0:23,28:812,1004:-147.86,-81.7374,-74.8137,-66.1415,0,-57.7126	1/2:108:0,58,47:0:0:58,47:2029,1671:-301.132,-136.062,-118.602,-165.096,0,-150.947	1/2:76:0,42,32:0:0:42,32:1488,1140:-214.053,-92.8642,-80.2209,-121.185,0,-111.552	1/1:3:0,3,0:0:0:3,0:99,0:-9.23658,-0.90309,0,-9.23658,-0.90309,-9.23658	1/2:105:0,87,10:0:0:87,10:3055,360:-278.006,-29.3825,-3.19289,-248.631,0,-245.621	1/2:88:0,71,12:0:0:71,12:2511,428:-239.288,-34.7927,-13.4196,-204.504,0,-200.891	1/2:4:0,3,1:0:0:3,1:104,36:-11.7405,-3.29724,-2.39415,-8.79971,0,-8.49868	1/2:172:0,144,20:0:0:144,20:5108,708: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chr01	26760270	.	T	C	15194.1	PASS	AB=0.449661;ABP=93.9557;AC=38;AF=0.202128;AN=188;AO=1870;CIGAR=1X;DP=9574;DPB=9574;DPRA=1.18952;EPP=4063.66;EPPR=16732;GTI=0;LEN=1;MEANALT=1;MQM=27.5829;MQMR=41.8463;NS=94;NUMALT=1;ODDS=0.297436;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66776;QR=276142;RO=7704;RPL=1870;RPP=4063.66;RPPR=16732;RPR=0;RUN=1;SAF=0;SAP=4063.66;SAR=1870;SRF=0;SRP=16732;SRR=7704;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:99:99,0:99:3556:0:0:0,-29.802,-307.474	0/1:86:62,24:62:2208:24:849:-30.7751,0,-165.69	0/0:124:124,0:124:4429:0:0:0,-37.3277,-382.386	0/0:174:172,2:172:6168:2:72:0,-47.3491,-522.613	0/1:60:41,19:41:1472:19:669:-22.3887,0,-111.491	0/1:38:21,17:21:752:17:612:-30.6984,0,-54.0292	0/1:94:67,27:67:2400:27:953:-36.3179,0,-176.449	0/0:144:143,1:143:5109:1:36:0,-40.6121,-439.741	0/0:200:200,0:200:7173:0:0:0,-60.206,-618.835	0/0:124:124,0:124:4464:0:0:0,-37.3277,-384.26	0/0:101:101,0:101:3602:0:0:0,-30.404,-309.648	0/0:124:124,0:124:4464:0:0:0,-37.3277,-382.879	0/1:92:45,47:45:1620:47:1688:-87.5069,0,-112.652	0/1:107:44,63:44:1580:63:2222:-120.077,0,-107.168	0/1:101:44,57:44:1584:57:2032:-107.167,0,-105.815	0/0:100:100,0:100:3577:0:0:0,-30.103,-314.057	0/0:69:69,0:69:2484:0:0:0,-20.7711,-213.21	0/1:47:29,18:29:1044:18:633:-29.8045,0,-77.0367	0/1:35:22,13:22:788:13:460:-21.6031,0,-57.5619	0/1:309:176,133:176:6278:133:4745:-228.637,0,-440.908	0/1:202:103,99:103:3673:99:3536:-178.926,0,-261.895	0/1:69:41,28:41:1472:28:1008:-45.9762,0,-108.797	0/0:132:131,1:131:4696:1:36:0,-36.9998,-396.808	0/0:101:94,7:94:3376:7:252:0,-12.8923,-278.793	0/0:137:137,0:137:4897:0:0:0,-41.2411,-429.091	0/1:221:135,86:135:4828:86:3065:-144.939,0,-362.335	0/0:215:215,0:215:7712:0:0:0,-64.7214,-679.234	0/0:37:37,0:37:1332:0:0:0,-11.1381,-117.945	0/1:209:115,94:115:4140:94:3342:-168.248,0,-303.827	0/0:112:112,0:112:3986:0:0:0,-33.7154,-351.214	0/0:135:135,0:135:4836:0:0:0,-40.639,-413.281	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.2662	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.1787	0/1:8:3,5:3:108:5:180:-10.4033,0,-7.39932	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.2557	0/0:10:10,0:10:360:0:0:0,-3.0103,-30.4458	0/1:216:98,118:98:3516:118:4221:-218.059,0,-245.672	0/0:126:126,0:126:4528:0:0:0,-37.9298,-397.91	0/1:65:50,15:50:1800:15:531:-17.3827,0,-136.775	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.0527	0/1:117:67,50:67:2408:50:1788:-87.6413,0,-176.879	0/0:52:52,0:52:1860:0:0:0,-15.6536,-162.597	0/0:195:195,0:195:6993:0:0:0,-58.7008,-616.079	0/0:78:78,0:78:2800:0:0:0,-23.4803,-239.131	0/0:73:73,0:73:2609:0:0:0,-21.9752,-222.073	0/0:135:135,0:135:4852:0:0:0,-40.639,-432.637	0/0:121:121,0:121:4344:0:0:0,-36.4246,-378.434	0/1:128:73,55:73:2613:55:1972:-94.224,0,-186.164	0/1:88:62,26:62:2209:26:936:-37.8101,0,-160.32	0/1:79:42,37:42:1512:37:1332:-66.2196,0,-106.134	0/1:79:58,21:58:2080:21:756:-28.2065,0,-161.002	0/0:13:13,0:13:468:0:0:0,-3.91339,-40.763	0/0:118:118,0:118:4228:0:0:0,-35.5215,-364.531	0/0:63:63,0:63:2252:0:0:0,-18.9649,-200.512	0/0:14:14,0:14:504:0:0:0,-4.21442,-44.4843	0/0:177:177,0:177:6310:0:0:0,-53.2823,-554.098	0/0:77:77,0:77:2753:0:0:0,-23.1793,-233.32	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.5484	0/1:20:10,10:10:360:10:342:-16.6661,0,-26.5462	0/0:123:123,0:123:4420:0:0:0,-37.0267,-390.293	0/0:111:110,1:110:3956:1:36:0,-30.6781,-335.755	0/0:11:11,0:11:392:0:0:0,-3.31133,-33.9989	0/0:133:133,0:133:4780:0:0:0,-40.037,-425.427	0/1:155:89,66:89:3177:66:2368:-111.838,0,-225.979	0/0:99:99,0:99:3552:0:0:0,-29.802,-310.981	0/0:94:94,0:94:3372:0:0:0,-28.2968,-290.227	0/0:159:159,0:159:5704:0:0:0,-47.8638,-489.152	0/1:126:50,76:50:1785:76:2717:-148.462,0,-114.986	0/0:79:79,0:79:2840:0:0:0,-23.7814,-248.487	0/0:91:91,0:91:3268:0:0:0,-27.3937,-284.533	0/0:60:60,0:60:2148:0:0:0,-18.0618,-191.321	0/0:30:30,0:30:1080:0:0:0,-9.0309,-92.5655	0/1:101:52,49:52:1872:49:1741:-89.1717,0,-132.038	0/1:98:45,53:45:1616:53:1900:-100.132,0,-111.645	0/0:196:196,0:196:6994:0:0:0,-59.0019,-610.178	0/0:154:154,0:154:5516:0:0:0,-46.3586,-471.924	0/1:144:100,44:100:3592:44:1580:-65.0452,0,-266.785	0/0:134:134,0:134:4808:0:0:0,-40.338,-419.723	0/0:23:23,0:23:828:0:0:0,-6.92369,-71.503	0/1:84:52,32:52:1872:32:1122:-51.2524,0,-140.284	0/1:78:45,33:45:1616:33:1180:-56.3622,0,-117.388	0/1:213:128,85:128:4577:85:3052:-142.476,0,-327.595	0/1:59:37,22:37:1324:22:792:-34.8849,0,-97.1739	0/1:94:50,44:50:1800:44:1560:-79.4242,0,-124.601	0/0:69:69,0:69:2480:0:0:0,-20.7711,-211.117	0/1:154:70,84:70:2508:84:2991:-156.922,0,-168.817	0/1:22:15,7:15:540:7:252:-8.80018,0,-40.4701	0/0:80:80,0:80:2876:0:0:0,-24.0824,-249.394	0/0:92:92,0:92:3281:0:0:0,-27.6948,-281.862	0/1:59:37,22:37:1332:22:792:-35.2986,0,-100.166	0/1:156:68,88:68:2444:88:3160:-163.221,0,-168.064	0/1:119:28,91:28:1004:91:3265:-185.588,0,-50.9735	0/0:136:136,0:136:4877:0:0:0,-40.9401,-415.573	0/0:151:151,0:151:5416:0:0:0,-45.4555,-463.933
chr01	27408652	.	A	T	83466.9	PASS	AB=0.501957;ABP=3.25672;AC=40;AF=0.212766;AN=188;AO=3736;CIGAR=1X;DP=15399;DPB=15399;DPRA=1.49174;EPP=8115.63;EPPR=25294.2;GTI=2;LEN=1;MEANALT=1.13462;MQM=59.9615;MQMR=59.9719;NS=94;NUMALT=1;ODDS=1.95123;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132449;QR=411227;RO=11651;RPL=2333;RPP=505.715;RPPR=1233.05;RPR=1403;RUN=1;SAF=2333;SAP=505.715;SAR=1403;SRF=7109;SRP=1231.14;SRR=4542;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:82:82,0:82:2894:0:0:0,-24.6845,-260.698	0/1:410:188,222:188:6617:222:7838:-582.026,0,-472.194	0/0:336:335,0:335:11901:0:0:0,-100.845,-1070.71	0/0:348:348,0:348:12346:0:0:0,-104.758,-1110.95	0/0:116:114,2:114:4048:2:72:0,-28.0828,-357.672	0/0:79:79,0:79:2771:0:0:0,-23.7814,-249.632	0/1:210:123,86:123:4362:86:3058:-212.173,0,-329.48	0/0:282:279,3:279:9863:3:108:0,-74.8153,-877.496	0/1:193:94,97:94:3336:97:3444:-252.318,0,-242.604	0/0:246:244,1:244:8602:1:21:0,-71.9373,-772.017	0/0:114:114,0:114:3987:0:0:0,-34.3174,-359.026	0/0:108:108,0:108:3797:0:0:0,-32.5112,-341.93	0/1:132:54,78:54:1904:78:2762:-209.086,0,-131.899	0/0:144:143,0:143:5081:0:0:0,-43.0473,-457.077	0/1:105:52,52:52:1817:52:1854:-135.471,0,-132.137	0/0:96:96,0:96:3341:0:0:0,-28.8989,-300.91	0/0:106:106,0:106:3710:0:0:0,-31.9092,-334.106	0/1:108:41,67:41:1412:67:2399:-183.655,0,-94.8613	0/0:82:82,0:82:2847:0:0:0,-24.6845,-256.471	0/0:402:402,0:402:14238:0:0:0,-121.014,-1281.19	0/1:238:124,113:124:4387:113:3995:-287.964,0,-323.301	0/1:176:65,111:65:2315:111:3944:-302.172,0,-155.629	0/0:123:122,1:122:4332:1:36:0,-33.4284,-386.458	0/1:207:90,117:90:3190:117:4179:-313.979,0,-225.012	0/0:168:168,0:168:5926:0:0:0,-50.573,-533.453	0/1:380:199,181:199:7009:181:6414:-462.931,0,-516.49	0/1:395:192,203:192:6817:203:7182:-527.491,0,-494.7	0/0:44:44,0:44:1558:0:0:0,-13.2453,-140.51	0/0:428:427,1:427:15112:1:36:0,-125.243,-1356.23	0/0:222:222,0:222:7813:0:0:0,-66.8287,-703.141	0/1:178:87,91:87:3053:91:3244:-238.599,0,-221.419	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/1:10:6,4:6:212:4:140:-9.93428,0,-16.4145	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5438	0/0:23:23,0:23:801:0:0:0,-6.92369,-72.4067	0/1:240:125,114:125:4412:114:4028:-290.405,0,-324.95	0/1:246:135,111:135:4774:111:3941:-280.699,0,-355.766	0/1:139:68,71:68:2355:71:2501:-183.495,0,-170.321	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:320:151,167:151:5348:167:5972:-441.545,0,-385.414	0/0:72:72,0:72:2505:0:0:0,-21.6742,-225.704	0/0:271:270,1:270:9554:1:21:0,-79.4792,-857.718	0/0:105:104,1:104:3630:1:36:0,-28.0099,-323.311	0/0:79:79,0:79:2772:0:0:0,-23.7814,-249.722	0/0:173:172,1:172:6091:1:32:0,-48.8789,-545.097	0/0:195:195,0:195:6807:0:0:0,-58.7008,-612.714	0/1:290:150,140:150:5305:140:4998:-362.669,0,-390.286	0/1:177:96,81:96:3408:81:2895:-207.503,0,-253.652	0/1:194:109,85:109:3850:85:2991:-211.023,0,-288.3	0/0:389:389,0:389:13821:0:0:0,-117.101,-1243.68	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:186:185,1:185:6514:1:36:0,-52.3933,-582.753	0/0:85:85,0:85:3011:0:0:0,-25.5875,-271.223	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.459	0/0:208:208,0:208:7379:0:0:0,-62.6142,-664.166	0/0:75:75,0:75:2633:0:0:0,-22.5772,-237.218	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:47:31,16:31:1104:16:563:-36.8508,0,-85.5222	0/0:152:152,0:152:5345:0:0:0,-45.7566,-481.19	0/0:140:140,0:140:4939:0:0:0,-42.1442,-444.665	0/0:14:14,0:14:488:0:0:0,-4.21442,-44.2504	0/0:235:235,0:235:8289:0:0:0,-70.742,-745.76	0/1:292:153,139:153:5416:139:4923:-355.321,0,-399.183	0/1:127:70,57:70:2496:57:1988:-140.959,0,-186.663	0/0:131:131,0:131:4635:0:0:0,-39.4349,-417.313	0/0:264:263,1:263:9229:1:36:0,-75.8736,-826.957	0/0:191:189,2:189:6671:2:68:0,-51.039,-594.022	0/0:70:70,0:70:2454:0:0:0,-21.0721,-221.115	0/0:185:184,0:184:6518:0:0:0,-55.3895,-586.43	0/1:107:55,52:55:1909:52:1836:-133.308,0,-139.876	0/1:46:16,30:16:568:30:1065:-82.3124,0,-37.6045	0/1:211:111,100:111:3943:100:3591:-259.878,0,-291.547	0/1:126:67,59:67:2388:59:2055:-147.287,0,-177.248	0/0:288:288,0:288:10161:0:0:0,-86.6966,-914.436	0/1:267:134,133:134:4751:133:4751:-347.373,0,-347.37	0/1:184:87,97:87:3103:97:3436:-254.064,0,-224.108	0/1:247:132,115:132:4638:115:4061:-291.325,0,-343.231	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	0/0:194:193,1:193:6778:1:36:0,-54.8015,-606.506	0/1:148:62,86:62:2195:86:3000:-225.678,0,-153.263	0/1:386:204,182:204:7199:182:6414:-461.154,0,-531.776	0/1:121:62,59:62:2204:59:2079:-150.955,0,-161.924	0/1:107:50,57:50:1765:57:2027:-150.492,0,-126.921	0/1:112:45,67:45:1566:67:2377:-180.457,0,-107.511	0/1:199:98,101:98:3416:101:3607:-264.931,0,-247.754	0/1:46:16,30:16:555:30:1068:-82.5847,0,-36.4287	0/0:103:103,0:103:3654:0:0:0,-31.0061,-329.066	0/0:114:114,0:114:4019:0:0:0,-34.3174,-361.902	0/0:96:96,0:96:3352:0:0:0,-28.8989,-301.899	0/1:182:92,90:92:3217:90:3212:-234.516,0,-234.969	0/1:99:44,55:44:1528:55:1939:-144.984,0,-108.007	0/0:128:128,0:128:4535:0:0:0,-38.5318,-408.319	0/0:137:137,0:137:4809:0:0:0,-41.2411,-432.927
chr01	27456164	.	GAGG	TAGA,GAGA	214248	PASS	AB=0.514978,0.481375;ABP=10.4908,14.577;AC=145,43;AF=0.771277,0.228723;AN=188;AO=6032,1853;CIGAR=1X2M1X,3M1X;DP=7914;DPB=7914;DPRA=86,1.31878;EPP=19.1898,5.82396;EPPR=10.7656;GTI=0;LEN=4,1;MEANALT=1.69565,2.13636;MQM=59.9574,59.9941;MQMR=60;NS=94;NUMALT=2;ODDS=2.86274;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=211972,65719;QR=250;RO=7;RPL=15,5;RPP=12971.4,3983.44;RPPR=18.2106;RPR=6017,1848;RUN=1,1;SAF=3137,956;SAP=24.0929,7.08957;SAR=2895,897;SRF=6;SRP=10.7656;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1064,0:-96.0718,-9.0309,0,-96.0718,-9.0309,-96.0718	1/2:101:0,48,53:0:0:48,53:1678,1895:-291.375,-154.873,-140.423,-136.856,0,-120.901	1/1:128:0,128,0:0:0:128,0:4469,0:-402.159,-38.5318,0,-402.159,-38.5318,-402.159	1/1:129:0,129,0:0:0:129,0:4508,0:-405.894,-38.8329,0,-405.894,-38.8329,-405.894	1/1:50:0,50,0:0:0:50,0:1756,0:-158.321,-15.0515,0,-158.321,-15.0515,-158.321	1/1:36:0,36,0:0:0:36,0:1261,0:-113.163,-10.8371,0,-113.163,-10.8371,-113.163	1/2:88:0,46,42:0:0:46,42:1618,1481:-252.643,-120.935,-107.087,-132.06,0,-119.417	1/1:79:0,79,0:0:0:79,0:2761,0:-248.733,-23.7814,0,-248.733,-23.7814,-248.733	1/2:74:0,36,38:0:0:36,38:1230,1343:-209.544,-109.73,-98.8931,-100.161,0,-88.7218	1/1:72:0,72,0:0:0:72,0:2524,0:-227.412,-21.6742,0,-227.412,-21.6742,-227.412	1/1:118:0,118,0:0:0:118,0:4143,0:-373.003,-35.5215,0,-373.003,-35.5215,-373.003	1/1:145:0,144,0:0:0:144,0:5094,0:-458.308,-43.3483,0,-458.308,-43.3483,-458.308	1/2:125:0,67,57:0:0:67,57:2358,2019:-356.48,-164.523,-144.354,-192.009,0,-174.85	1/1:126:0,125,0:0:0:125,0:4409,0:-396.689,-37.6288,0,-396.689,-37.6288,-396.689	1/2:125:0,57,68:0:0:57,68:2036,2409:-362.594,-196.596,-179.437,-166.354,0,-145.884	1/1:112:0,112,0:0:0:112,0:3926,0:-353.537,-33.7154,0,-353.537,-33.7154,-353.537	1/1:119:0,119,0:0:0:119,0:4207,0:-378.729,-35.8226,0,-378.729,-35.8226,-378.729	1/2:140:0,72,68:0:0:72,68:2566,2400:-404.948,-195.786,-174.111,-209.517,0,-189.047	1/1:123:0,122,0:0:0:122,0:4293,0:-386.194,-36.7257,0,-386.194,-36.7257,-386.194	1/1:131:0,130,1:0:0:130,1:4569,32:-411.061,-39.1339,0,-408.483,-36.2356,-408.182	1/2:82:0,48,34:0:0:48,34:1695,1204:-236.459,-98.4308,-83.9814,-138.382,0,-128.147	1/2:14:0,7,7:0:0:7,7:245,239:-39.6721,-19.7347,-17.6275,-20.283,0,-18.1758	1/1:43:0,42,0:0:0:42,0:1481,0:-133.332,-12.6433,0,-133.332,-12.6433,-133.332	1/2:69:0,35,34:0:0:35,34:1239,1196:-198.635,-97.7103,-87.1743,-101.278,0,-91.0426	1/1:29:0,29,0:0:0:29,0:1026,0:-92.6478,-8.72987,0,-92.6478,-8.72987,-92.6478	1/2:153:0,88,65:0:0:88,65:3089,2319:-440.799,-189.403,-162.912,-251.75,0,-232.183	1/2:115:0,65,50:0:0:65,50:2286,1772:-330.794,-144.712,-125.145,-186.435,0,-171.383	1/1:70:0,70,0:0:0:70,0:2463,0:-221.924,-21.0721,0,-221.924,-21.0721,-221.924	1/1:105:0,104,0:0:0:104,0:3660,0:-329.25,-31.3071,0,-329.25,-31.3071,-329.25	1/1:42:0,41,0:0:0:41,0:1404,0:-126.335,-12.3422,0,-126.335,-12.3422,-126.335	1/2:61:0,22,39:0:0:22,39:763,1392:-175.855,-113.839,-107.216,-62.3663,0,-50.6262	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:5:0,4,1:0:0:4,1:143,36:-14.9552,-3.29724,-2.09312,-12.0173,0,-11.7163	1/1:4:0,4,0:0:0:4,0:137,0:-12.6674,-1.20412,0,-12.6674,-1.20412,-12.6674	1/2:322:2,170,149:2:70:170,149:5992,5247:-908.74,-421.472,-375.993,-482.173,0,-443.015	1/2:43:0,27,16:0:0:27,16:936,568:-122.706,-46.6354,-38.5076,-76.4225,0,-71.606	1/2:143:0,65,78:0:0:65,78:2268,2780:-411.423,-226.961,-207.394,-184.813,0,-161.333	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:95:1,50,43:1:36:50,43:1752,1510:-262.208,-119.948,-107.834,-139.615,0,-129.608	1/1:99:0,98,0:0:0:98,0:3476,0:-312.695,-29.5009,0,-312.695,-29.5009,-312.695	1/1:72:0,72,0:0:0:72,0:2533,0:-228.223,-21.6742,0,-228.223,-21.6742,-228.223	1/1:129:0,129,0:0:0:129,0:4525,0:-407.424,-38.8329,0,-407.424,-38.8329,-407.424	1/1:134:0,134,0:0:0:134,0:4683,0:-421.64,-40.338,0,-421.64,-40.338,-421.64	1/1:61:0,61,0:0:0:61,0:2152,0:-193.944,-18.3628,0,-193.944,-18.3628,-193.944	1/1:66:0,65,0:0:0:65,0:2290,0:-206.003,-19.567,0,-206.003,-19.567,-206.003	1/2:96:0,50,45:0:0:50,45:1767,1616:-275.729,-131.824,-116.772,-143.902,0,-130.355	1/2:50:2,25,22:2:72:25,22:885,788:-129.897,-58.4107,-56.7602,-66.2321,0,-65.4849	1/2:102:0,59,43:0:0:59,43:2044,1525:-290.715,-124.597,-106.836,-166.469,0,-153.525	1/1:70:0,69,1:0:0:69,1:2442,36:-219.675,-20.7711,0,-216.737,-17.4738,-216.436	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:80:0,79,0:0:0:79,0:2770,0:-249.184,-23.7814,0,-249.184,-23.7814,-249.184	1/1:25:0,25,0:0:0:25,0:876,0:-79.1545,-7.52575,0,-79.1545,-7.52575,-79.1545	1/1:6:0,6,0:0:0:6,0:215,0:-19.6992,-1.80618,0,-19.6992,-1.80618,-19.6992	1/1:93:0,93,0:0:0:93,0:3266,0:-294.163,-27.9958,0,-294.163,-27.9958,-294.163	1/1:33:0,33,0:0:0:33,0:1154,0:-104.166,-9.93399,0,-104.16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chr01	27487698	.	G	A	77574.7	PASS	AB=0.537796;ABP=30.2585;AC=148;AF=0.787234;AN=188;AO=3636;CIGAR=1X;DP=4656;DPB=4656;DPRA=16.6774;EPP=7881.12;EPPR=2209.23;GTI=1;LEN=1;MEANALT=1;MQM=59.9755;MQMR=60;NS=94;NUMALT=1;ODDS=2.03829;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130338;QR=36507;RO=1020;RPL=2;RPP=7881.12;RPPR=2209.23;RPR=3634;RUN=1;SAF=3636;SAP=7898.48;SAR=0;SRF=1020;SRP=2217.91;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:44:15,29:15:536:29:1040:-80.669,0,-35.3295	1/1:101:0,101:0:0:101:3626:-326.544,-30.404,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:69:25,44:25:881:44:1584:-122.08,0,-58.8348	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	0/1:49:33,16:33:1184:16:576:-37.4245,0,-92.1178	1/1:52:0,52:0:0:52:1857:-167.408,-15.6536,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:43:1,42:1:36:42:1512:-132.776,-9.34602,0	0/1:59:36,23:36:1296:23:828:-57.0833,0,-99.1832	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:34:17,17:17:612:17:612:-45.1784,0,-45.1784	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:52:0,52:0:0:52:1853:-167.049,-15.6536,0	0/1:38:20,18:20:705:18:644:-46.8515,0,-52.3336	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:94:0,94:0:0:94:3364:-302.976,-28.2968,0	0/1:90:34,56:34:1205:56:2012:-154.26,0,-81.6612	0/1:55:41,14:41:1468:14:504:-29.141,0,-115.859	1/1:45:0,45:0:0:45:1608:-145.008,-13.5464,0	0/1:74:40,34:40:1436:34:1209:-86.8379,0,-107.261	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:66:30,36:30:1065:36:1296:-97.076,0,-76.2918	0/1:159:60,99:60:2156:99:3544:-271.303,0,-146.443	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:138:0,138:0:0:138:4960:-446.547,-41.5421,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:50:22,28:22:788:28:1004:-75.624,0,-56.1933	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:87:55,32:55:1976:32:1152:-77.8005,0,-151.925	0/1:99:27,72:27:972:72:2592:-203.726,0,-57.9959	0/1:37:15,22:15:528:22:788:-60.1067,0,-36.7133	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:40:13,27:13:468:27:972:-75.7567,0,-30.4184	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:28:0,28:0:0:28:1008:-91.0317,-8.42884,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:64:0,64:0:0:64:2266:-204.199,-19.2659,0	0/1:61:29,32:29:1036:32:1148:-85.267,0,-75.1911	0/1:44:15,29:15:521:29:1040:-80.669,0,-33.971	0/1:59:25,34:25:900:34:1220:-92.346,0,-63.5602	1/1:99:0,99:0:0:99:3526:-316.611,-29.802,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:83:1,82:1:36:82:2937:-260.966,-21.3872,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:69:0,69:0:0:69:2461:-221.706,-20.7711,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:95:0,95:0:0:95:3420:-308.012,-28.5979,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	0/1:92:36,56:36:1281:56:1994:-152.037,0,-87.8965	0/1:59:29,30:29:1044:30:1076:-79.3921,0,-76.514	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:85:0,85:0:0:85:3045:-274.278,-25.5876,0	1/1:51:0,51:0:0:51:1821:-164.169,-15.3525,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:76:0,76:0:0:76:2721:-245.131,-22.8783,0	0/1:48:21,27:21:756:27:972:-73.3485,0,-53.9178	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/1:93:36,57:36:1292:57:2036:-155.515,0,-88.588	0/1:32:20,12:20:708:12:432:-29.5882,0,-54.4126	1/1:84:0,84:0:0:84:3001:-270.213,-25.2865,0	0/1:63:22,41:22:788:41:1426:-109.665,0,-52.2799	0/1:70:33,37:33:1188:37:1328:-98.7501,0,-86.1565	0/1:47:24,23:24:864:23:824:-60.3349,0,-63.9342	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:42:0,42:0:0:42:1497:-135.023,-12.6433,0	0/1:61:18,43:18:648:43:1540:-120.53,0,-40.2891	0/1:64:28,36:28:1008:36:1296:-97.678,0,-71.7704	0/1:64:35,29:35:1260:29:1044:-75.0089,0,-94.4396	0/1:43:24,19:24:864:19:684:-48.946,0,-65.1383	0/1:39:20,19:20:720:19:684:-50.1502,0,-53.3886	0/1:67:43,24:43:1525:24:864:-57.9136,0,-117.372	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:70:35,35:35:1256:35:1256:-92.2732,0,-92.2732	0/1:34:20,14:20:716:14:504:-35.4631,0,-54.5327	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:40:0,40:0:0:40:1426:-128.637,-12.0412,0
chr01	27487719	.	T	C	16308.9	PASS	AB=0.465899;ABP=24.9292;AC=40;AF=0.212766;AN=188;AO=1014;CIGAR=1X;DP=4585;DPB=4585;DPRA=1.27052;EPP=2204.88;EPPR=7755.17;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=59.9768;NS=94;NUMALT=1;ODDS=1.69511;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36122;QR=127931;RO=3570;RPL=1014;RPP=2204.88;RPPR=7755.17;RPR=0;RUN=1;SAF=1014;SAP=2204.88;SAR=0;SRF=3570;SRP=7755.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:43:28,15:28:1004:15:536:-35.6305,0,-77.7316	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.845	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:70:44,26:44:1576:26:919:-61.9541,0,-121.059	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/1:48:16,32:16:576:32:1124:-87.0158,0,-37.7255	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:58:23,35:23:828:35:1239:-94.3526,0,-57.3844	0/0:58:58,0:58:2056:0:0:0,-17.4597,-185.312	0/1:34:17,17:17:612:17:612:-45.1784,0,-45.1784	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6107	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/1:87:54,33:54:1927:33:1173:-79.6859,0,-147.516	0/1:53:14,39:14:504:39:1372:-107.823,0,-29.7431	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/1:74:34,40:34:1216:40:1436:-107.261,0,-87.4703	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:65:38,27:38:1356:27:972:-68.231,0,-102.774	0/1:160:98,62:98:3503:62:2210:-150.999,0,-267.315	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:134:134,0:134:4803:0:0:0,-40.338,-432.424	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:49:28,21:28:1008:21:748:-52.8948,0,-76.2855	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:86:32,54:32:1152:54:1925:-147.636,0,-78.1016	0/1:99:71,28:71:2540:28:1004:-60.8739,0,-199.049	0/1:37:22,15:22:788:15:536:-37.4367,0,-60.1067	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:40:27,13:27:968:13:468:-30.4184,0,-75.3962	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7144	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	0/1:60:30,30:30:1076:30:1070:-78.5502,0,-79.0911	0/1:42:27,15:27:972:15:523:-34.7552,0,-75.1546	0/1:58:33,25:33:1184:25:900:-63.8613,0,-89.4086	0/0:99:99,0:99:3551:0:0:0,-29.802,-318.86	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.487	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:67:67,0:67:2403:0:0:0,-20.169,-216.44	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.191	0/0:95:95,0:95:3398:0:0:0,-28.5978,-306.034	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:89:53,36:53:1896:36:1296:-90.1523,0,-144.126	0/1:61:30,31:30:1072:31:1079:-79.053,0,-78.4296	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:80:79,0:79:2840:0:0:0,-23.7814,-255.478	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.953	0/1:49:28,21:28:1004:21:734:-51.6299,0,-75.9254	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:93:56,37:56:2012:37:1324:-91.4663,0,-153.357	0/1:28:9,19:9:324:19:684:-53.4615,0,-21.077	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.13	0/1:61:40,21:40:1440:21:752:-49.6434,0,-111.535	0/1:69:37,32:37:1315:32:1140:-82.1381,0,-97.88	0/1:45:21,24:21:748:24:843:-62.6416,0,-54.0989	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:60:42,18:42:1504:18:644:-40.2288,0,-117.593	0/1:63:35,28:35:1260:28:1008:-72.0715,0,-94.7406	0/1:63:28,35:28:1004:35:1228:-91.8554,0,-71.711	0/1:43:19,24:19:684:24:864:-65.1383,0,-48.946	0/1:37:17,20:17:604:20:714:-53.4488,0,-43.5525	0/1:68:25,43:25:900:43:1529:-117.431,0,-60.851	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/1:69:33,36:33:1184:36:1288:-95.4525,0,-86.0972	0/1:33:14,19:14:504:19:684:-51.9563,0,-35.7641	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727
chr01	27488401	.	TGAC	CGAT,CGAC	195968	PASS	AB=0.504312,0.490014;ABP=3.72197,6.82689;AC=146,40;AF=0.784946,0.215054;AN=186;AO=7093,2172;CIGAR=1X2M1X,1X3M;DP=9317;DPB=9318.25;DPRA=0,1.45847;EPP=15396.6,4719.45;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=2.04301,2.6;MQM=59.9215,59.9779;MQMR=60;NS=93;NUMALT=2;ODDS=1.52505;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=88,88;PQR=0;PRO=0;QA=249083,77238;QR=36;RO=1;RPL=7092,2172;RPP=15396.6,4719.45;RPPR=5.18177;RPR=1,0;RUN=1,1;SAF=7093,2172;SAP=15405.3,4719.45;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42,0:0:0:42,0:1487,0:-134.017,-12.6433,0,-134.017,-12.6433,-134.017	1/2:116:0,47,67:0:0:47,67:1645,2375:-327.312,-193.477,-179.328,-133.828,0,-113.659	1/1:116:0,116,0:0:0:116,0:4067,0:-366.029,-34.9195,0,-366.029,-34.9195,-366.029	1/1:260:0,259,0:0:0:259,0:9137,0:-822.029,-77.9668,0,-822.029,-77.9668,-822.029	1/1:49:0,48,0:0:0:48,0:1680,0:-151.192,-14.4494,0,-151.192,-14.4494,-151.192	1/1:69:0,68,0:0:0:68,0:2387,0:-214.844,-20.47,0,-214.844,-20.47,-214.844	1/2:138:0,65,73:0:0:65,73:2265,2603:-396.734,-212.543,-192.976,-184.544,0,-162.568	1/1:156:0,154,2:0:0:154,2:5363,72:-482.448,-46.3586,0,-476.573,-40.124,-475.971	1/2:103:0,29,74:0:0:29,74:1010,2634:-297.16,-215.03,-206.3,-82.4799,0,-60.2037	1/1:90:0,89,1:0:0:89,1:3134,36:-281.869,-26.7917,0,-278.932,-23.4944,-278.631	1/1:49:0,49,0:0:0:49,0:1710,0:-154.18,-14.7505,0,-154.18,-14.7505,-154.18	1/1:124:0,123,0:0:0:123,0:4305,0:-387.272,-37.0267,0,-387.272,-37.0267,-387.272	1/2:68:0,43,25:0:0:43,25:1513,896:-196.595,-73.4346,-60.4903,-123.517,0,-115.991	1/1:67:0,66,0:0:0:66,0:2307,0:-207.528,-19.868,0,-207.528,-19.868,-207.528	1/2:62:0,38,24:0:0:38,24:1345,841:-178.341,-68.7816,-57.3425,-109.911,0,-102.686	1/1:69:0,69,0:0:0:69,0:2426,0:-218.596,-20.7711,0,-218.596,-20.7711,-218.596	1/1:40:0,39,0:0:0:39,0:1370,0:-123.295,-11.7402,0,-123.295,-11.7402,-123.295	1/2:51:0,28,23:0:0:28,23:975,824:-146.838,-67.5596,-59.1308,-79.6318,0,-72.7081	1/1:44:0,44,0:0:0:44,0:1554,0:-140.152,-13.2453,0,-140.152,-13.2453,-140.152	1/1:197:0,194,2:0:0:194,2:6852,68:-616.41,-58.3998,0,-610.894,-52.8973,-610.292	1/2:218:0,82,133:0:0:82,133:2854,4712:-615.935,-383.872,-359.187,-232.083,0,-192.046	1/2:107:0,47,60:0:0:47,60:1630,2122:-305.665,-173.186,-159.038,-132.829,0,-114.767	1/1:115:0,115,0:0:0:115,0:4026,0:-362.534,-34.6185,0,-362.534,-34.6185,-362.534	1/2:59:0,33,26:0:0:33,26:1154,906:-167.907,-74.025,-64.091,-94.2304,0,-86.4036	1/1:78:0,78,0:0:0:78,0:2740,0:-246.84,-23.4803,0,-246.84,-23.4803,-246.84	1/2:287:1,143,141:1:36:143,141:5030,5025:-815.824,-406.674,-366.564,-406.527,0,-367.019	1/2:271:0,164,107:0:0:164,107:5755,3818:-779.956,-311.607,-262.238,-468.703,0,-436.493	1/1:23:0,23,0:0:0:23,0:823,0:-74.3931,-6.92369,0,-74.3931,-6.92369,-74.3931	1/1:290:0,289,0:0:0:289,0:10109,0:-909.462,-86.9977,0,-909.462,-86.9977,-909.462	1/1:177:0,177,0:0:0:177,0:6241,0:-561.518,-53.2823,0,-561.518,-53.2823,-561.518	1/2:105:0,48,57:0:0:48,57:1672,2035:-302.225,-166.263,-151.813,-136.314,0,-119.156	1/1:15:0,15,0:0:0:15,0:528,0:-47.8511,-4.51545,0,-47.8511,-4.51545,-47.8511	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/2:7:0,2,5:0:0:2,5:61,180:-19.9175,-15.0469,-14.4449,-5.19117,0,-3.68602	1/1:5:0,5,0:0:0:5,0:179,0:-16.4604,-1.50515,0,-16.4604,-1.50515,-16.4604	1/1:11:0,10,0:0:0:10,0:359,0:-32.3574,-3.0103,0,-32.3574,-3.0103,-32.3574	1/2:201:0,105,95:0:0:105,95:3712,3394:-579.116,-276.796,-245.187,-302.395,0,-273.797	1/2:92:0,49,43:0:0:49,43:1721,1516:-263.857,-123.786,-109.036,-140.423,0,-127.479	1/2:52:0,28,24:0:0:28,24:996,828:-148.784,-67.608,-59.1791,-81.526,0,-74.3013	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/2:145:0,88,57:0:0:88,57:3089,2020:-416.305,-164.912,-138.421,-251.747,0,-234.588	1/1:54:0,54,0:0:0:54,0:1909,0:-172.086,-16.2556,0,-172.086,-16.2556,-172.086	1/1:148:0,147,0:0:0:147,0:5171,0:-464.941,-44.2514,0,-464.941,-44.2514,-464.941	1/1:89:0,88,0:0:0:88,0:3087,0:-277.806,-26.4906,0,-277.806,-26.4906,-277.806	.:.:.:.:.:.:.:.	1/1:161:0,161,0:0:0:161,0:5644,0:-508.089,-48.4658,0,-508.089,-48.4658,-508.089	1/1:108:0,108,0:0:0:108,0:3784,0:-340.76,-32.5112,0,-340.76,-32.5112,-340.76	1/2:153:0,67,85:0:0:67,85:2332,3024:-436.095,-246.479,-226.31,-189.647,0,-164.059	1/2:125:0,56,69:0:0:56,69:1970,2457:-360.975,-200.612,-183.754,-160.716,0,-139.945	1/2:161:0,70,90:0:0:70,90:2451,3130:-453.895,-254.473,-233.4,-199.412,0,-172.319	1/1:132:0,132,0:0:0:132,0:4656,0:-419.203,-39.736,0,-419.203,-39.736,-419.203	1/1:6:0,6,0:0:0:6,0:215,0:-19.6992,-1.80618,0,-19.6992,-1.80618,-19.6992	1/1:110:0,107,0:0:0:107,0:3807,0:-342.465,-32.2102,0,-342.465,-32.2102,-342.465	1/1:81:0,81,0:0:0:81,0:2828,0:-254.759,-24.3834,0,-254.759,-24.3834,-254.759	1/1:9:0,9,0:0:0:9,0:322,0:-29.3243,-2.70927,0,-29.3243,-2.70927,-29.3243	1/1:188:0,188,0:0:0:188,0:6621,0:-595.97,-56.5936,0,-595.97,-56.5936,-595.97	1/1:37:0,37,0:0:0:37,0:1297,0:-117.03,-11.1381,0,-117.03,-11.1381,-117.03	1/1:20:0,20,0:0:0:20,0:70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chr01	27488443	.	A	G	113765	PASS	AB=0.450109;ABP=72.1286;AC=145;AF=0.77957;AN=186;AO=5305;CIGAR=1X;DP=7096;DPB=7096;DPRA=0;EPP=11341;EPPR=3797.16;GTI=3;LEN=1;MEANALT=1;MQM=59.9972;MQMR=59.957;NS=93;NUMALT=1;ODDS=1.12992;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189810;QR=64137;RO=1791;RPL=5285;RPP=11349.6;RPPR=3797.16;RPR=20;RUN=1;SAF=1;SAP=11514;SAR=5304;SRF=0;SRP=3892.12;SRR=1791;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:72:0,72:0:0:72:2572:-231.73,-21.6742,0	0/1:44:25,19:25:896:19:671:-47.4705,0,-67.715	1/1:87:0,87:0:0:87:3107:-279.857,-26.1896,0	1/1:223:1,222:1:36:222:7930:-710.127,-63.5314,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:36:0,36:0:0:36:1281:-115.591,-10.8371,0	0/1:43:29,14:29:1044:14:504:-32.7538,0,-81.3305	1/1:87:0,87:0:0:87:3110:-280.127,-26.1896,0	0/1:93:43,50:43:1544:50:1787:-133.116,0,-111.257	1/1:76:0,76:0:0:76:2710:-244.143,-22.8783,0	1/1:94:0,94:0:0:94:3356:-302.255,-28.2968,0	1/1:122:0,122:0:0:122:4367:-393.203,-36.7257,0	0/1:111:60,51:60:2160:51:1804:-129.225,0,-161.252	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0	0/1:85:42,43:42:1497:43:1533:-112.674,0,-109.435	1/1:83:1,82:1:36:82:2935:-260.785,-21.3872,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:52:31,21:31:1116:21:756:-52.7137,0,-85.0981	1/1:42:0,42:0:0:42:1503:-135.564,-12.6433,0	1/1:113:0,113:0:0:113:4068:-366.304,-34.0164,0	0/1:72:51,21:51:1832:21:747:-45.8801,0,-143.487	0/0:29:27,2:27:964:2:72:0,-1.89315,-80.2401	1/1:82:0,82:0:0:82:2935:-264.385,-24.6845,0	0/1:86:57,29:57:2025:29:1044:-68.3862,0,-156.622	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:222:127,95:127:4560:95:3408:-240.105,0,-343.63	0/1:107:54,53:54:1929:53:1904:-139.428,0,-141.675	1/1:37:0,37:0:0:37:1329:-119.912,-11.1381,0	1/1:211:0,211:0:0:211:7537:-678.371,-63.5173,0	1/1:105:2,103:2:72:103:3704:-326.724,-24.7714,0	0/1:139:91,48:91:3259:48:1728:-113.962,0,-251.687	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:247:129,118:129:4617:118:4226:-306.164,0,-341.337	0/1:93:65,28:65:2317:28:992:-61.5973,0,-180.793	0/1:51:23,28:23:809:28:1004:-75.3233,0,-57.7606	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:100:60,40:60:2132:40:1424:-98.3545,0,-162.043	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:103:0,103:0:0:103:3695:-332.751,-31.0061,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:138:0,138:0:0:138:4935:-444.3,-41.5421,0	1/1:60:1,59:1:36:59:2112:-186.751,-14.4635,0	0/1:109:55,54:55:1980:54:1944:-142.424,0,-145.662	0/1:82:41,41:41:1453:41:1451:-106.201,0,-106.379	0/1:63:37,26:37:1328:26:930:-65.0538,0,-100.857	1/1:114:0,114:0:0:114:4096:-368.824,-34.3174,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:69:0,69:0:0:69:2459:-221.564,-20.7711,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:102:0,102:0:0:102:3643:-328.075,-30.7051,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:16:4,12:4:144:12:422:-33.4985,0,-8.49714	1/1:105:0,105:0:0:105:3752:-337.879,-31.6082,0	1/1:114:1,113:1:36:113:4056:-361.628,-30.7191,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:131:0,131:0:0:131:4688:-422.081,-39.4349,0	0/1:103:59,44:59:2124:44:1575:-111.035,0,-160.265	0/1:70:36,34:36:1277:34:1209:-88.042,0,-94.159	1/1:68:0,68:0:0:68:2431:-219.039,-20.47,0	1/1:105:0,105:0:0:105:3760:-338.6,-31.6082,0	1/1:84:0,84:0:0:84:3006:-270.77,-25.2865,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:43:18,25:18:648:25:892:-67.6554,0,-45.7076	0/1:22:15,7:15:525:7:252:-16.4063,0,-40.9554	0/1:60:32,28:32:1133:28:990:-71.3509,0,-84.2145	0/1:61:36,25:36:1296:25:892:-62.2369,0,-98.5811	1/1:146:0,146:0:0:146:5209:-468.949,-43.9504,0	0/1:60:34,26:34:1212:26:927:-65.6856,0,-91.3245	0/1:95:53,42:53:1892:42:1496:-106.337,0,-141.96	0/1:67:34,33:34:1220:33:1184:-86.6993,0,-89.9378	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:30:0,30:0:0:30:1076:-97.1531,-9.0309,0	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/1:166:80,86:80:2860:86:3080:-227.457,0,-207.667	0/1:62:29,33:29:1044:33:1179:-87.754,0,-75.6109	0/1:108:55,53:55:1980:53:1900:-138.767,0,-145.963	0/1:66:33,33:33:1188:33:1169:-85.6473,0,-87.3606	0/1:163:87,76:87:3128:76:2711:-195.166,0,-232.677	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	1/1:77:0,77:0:0:77:2759:-248.551,-23.1793,0	1/1:83:0,83:0:0:83:2970:-267.532,-24.9855,0	1/1:76:0,76:0:0:76:2724:-245.401,-22.8783,0	0/1:99:50,49:50:1800:49:1760:-128.882,0,-132.48	0/1:83:53,30:53:1908:30:1080:-72.5278,0,-147.012	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	1/1:130:0,130:0:0:130:4629:-416.772,-39.1339,0
chr01	27488465	.	G	A	31192.6	PASS	AB=0.552524;ABP=79.4272;AC=41;AF=0.22043;AN=186;AO=1796;CIGAR=1X;DP=7065;DPB=7065;DPRA=1.2457;EPP=3902.97;EPPR=11442.3;GTI=3;LEN=1;MEANALT=1.02222;MQM=59.9571;MQMR=59.9953;NS=93;NUMALT=1;ODDS=1.50647;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64287;QR=188133;RO=5268;RPL=1796;RPP=3902.97;RPPR=11442.3;RPR=0;RUN=1;SAF=0;SAP=3902.97;SAR=1796;SRF=0;SRP=11442.3;SRR=5268;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/1:43:19,24:19:680:24:864:-65.1383,0,-48.5849	0/0:87:86,1:86:3072:1:36:0,-22.5913,-273.111	0/0:223:222,1:222:7920:1:36:0,-63.5314,-709.23	0/0:38:38,0:38:1340:0:0:0,-11.4391,-120.9	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:45:15,30:15:536:30:1072:-83.2461,0,-35.0285	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.708	0/1:92:51,41:51:1824:41:1468:-104.721,0,-136.746	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.367	0/0:92:92,0:92:3283:0:0:0,-27.6948,-295.69	0/0:122:122,0:122:4359:0:0:0,-36.7257,-392.485	0/1:112:51,61:51:1832:61:2196:-164.19,0,-131.445	0/0:90:90,0:90:3206:0:0:0,-27.0927,-288.763	0/1:85:43,42:43:1531:42:1504:-110.067,0,-112.495	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.743	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/1:50:20,30:20:720:30:1070:-81.5605,0,-50.0773	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/1:76:22,54:22:780:54:1934:-151.458,0,-47.6415	1/1:30:2,28:2:72:28:1004:-83.8391,-2.19418,0	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.157	0/1:86:29,57:29:1040:57:2044:-158.341,0,-68.0258	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:222:95,127:95:3404:127:4556:-343.271,0,-239.746	0/1:107:52,55:52:1852:55:1949:-143.474,0,-134.75	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:212:212,0:212:7568:0:0:0,-63.8184,-681.163	0/0:104:102,2:102:3656:2:72:0,-24.4704,-322.407	0/1:140:48,92:48:1716:92:3290:-254.175,0,-112.581	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	.:.:.:.:.:.:.:.	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:246:120,125:120:4291:125:4473:-328.627,0,-312.255	0/1:92:27,65:27:956:65:2332:-182.445,0,-58.661	0/1:49:25,24:25:888:24:845:-61.5458,0,-65.4886	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:96:36,60:36:1284:60:2156:-165.408,0,-86.9645	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:103:103,0:103:3664:0:0:0,-31.0061,-329.966	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:67:67,0:67:2380:0:0:0,-20.169,-214.459	0/0:131:131,0:131:4680:0:0:0,-39.4349,-421.362	0/0:58:57,1:57:2044:1:36:0,-13.8615,-180.634	0/1:109:54,55:54:1936:55:1954:-143.322,0,-141.704	0/1:84:42,42:42:1492:42:1504:-110.368,0,-109.288	0/1:64:26,38:26:928:38:1364:-103.795,0,-64.5723	0/0:113:113,0:113:4032:0:0:0,-34.0164,-363.07	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:100:100,0:100:3572:0:0:0,-30.103,-321.688	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:16:12,4:12:428:4:144:-8.49714,0,-34.0423	0/0:107:107,0:107:3812:0:0:0,-32.2102,-343.279	0/0:115:114,1:114:4061:1:36:0,-31.0202,-362.079	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/1:99:41,58:41:1448:58:2053:-155.232,0,-100.814	0/1:67:32,35:32:1136:35:1256:-93.1763,0,-82.3799	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.385	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:43:24,19:24:838:19:676:-48.2237,0,-62.792	0/1:22:7,15:7:252:15:540:-42.3139,0,-16.4063	0/1:58:26,32:26:928:32:1152:-86.53,0,-66.3785	0/1:60:24,36:24:844:36:1296:-98.8821,0,-58.2171	0/0:145:145,0:145:5163:0:0:0,-43.6493,-464.813	0/1:60:26,34:26:928:34:1217:-91.7749,0,-65.7765	0/1:96:42,54:42:1508:54:1920:-144.178,0,-107.116	0/1:66:32,34:32:1148:34:1220:-90.2388,0,-83.7619	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:28:13,15:13:464:15:540:-40.5077,0,-33.6687	0/1:167:84,83:84:2992:83:2952:-215.639,0,-219.241	0/1:64:33,31:33:1176:31:1108:-80.7651,0,-86.8818	0/1:111:56,55:56:1991:55:1980:-145.06,0,-146.049	0/1:65:32,33:32:1148:33:1182:-87.121,0,-84.0629	0/1:162:76,86:76:2716:86:3088:-229.38,0,-195.917	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.786	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.118	0/1:99:50,49:50:1796:49:1760:-128.882,0,-132.11	0/1:83:31,52:31:1096:52:1868:-143.414,0,-73.9644	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:131:131,0:131:4670:0:0:0,-39.4349,-420.462
chr01	27521516	.	A	G	145088	PASS	AB=0.486077;ABP=10.448;AC=145;AF=0.77957;AN=186;AO=6707;CIGAR=1X;DP=8986;DPB=8986;DPRA=0;EPP=13627.3;EPPR=4622.9;GTI=4;LEN=1;MEANALT=1.02151;MQM=59.949;MQMR=59.9982;NS=93;NUMALT=1;ODDS=0.488083;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238693;QR=81526;RO=2277;RPL=6597;RPP=13627.3;RPPR=4622.9;RPR=110;RUN=1;SAF=0;SAP=14567.1;SAR=6707;SRF=0;SRP=4947.45;SRR=2277;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:776:-70.0748,-6.62266,0	0/1:149:74,75:74:2643:75:2675:-196.142,0,-193.263	1/1:100:0,100:0:0:100:3572:-321.686,-30.103,0	1/1:121:0,121:0:0:121:4280:-385.38,-36.4246,0	1/1:35:0,35:0:0:35:1235:-111.453,-10.5361,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:134:87,47:87:3108:47:1668:-110.069,0,-239.61	1/1:128:0,128:0:0:128:4572:-411.646,-38.5318,0	0/1:51:19,32:19:668:32:1131:-86.7451,0,-45.0931	1/1:142:0,142:0:0:142:5039:-453.652,-42.7463,0	1/1:120:0,120:0:0:120:4265:-384.027,-36.1236,0	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	0/1:71:37,34:37:1328:34:1212:-88.0132,0,-98.4491	1/1:112:0,112:0:0:112:3989:-359.2,-33.7154,0	0/1:86:36,50:36:1296:50:1792:-135.674,0,-91.0554	1/1:71:0,71:0:0:71:2537:-228.58,-21.3731,0	1/1:113:0,113:0:0:113:4038:-363.608,-34.0164,0	0/1:52:24,28:24:864:28:1004:-75.0223,0,-62.429	1/1:67:0,67:0:0:67:2376:-214.041,-20.169,0	1/1:244:0,244:0:0:244:8644:-777.958,-73.4513,0	0/1:79:31,48:31:1104:48:1712:-130.584,0,-75.8893	0/1:121:100,21:100:3596:21:756:-31.9426,0,-287.42	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:109:52,57:52:1864:57:2040:-151.06,0,-135.227	1/1:93:1,92:1:36:92:3288:-292.537,-24.3975,0	0/1:261:137,123:137:4901:123:4375:-315.391,0,-362.761	0/1:180:77,103:77:2756:103:3652:-274.698,0,-194.097	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	1/1:222:0,222:0:0:222:7886:-709.771,-66.8287,0	1/1:131:0,131:0:0:131:4662:-419.741,-39.4349,0	0/1:165:76,89:76:2705:89:3167:-235.554,0,-194.021	.:.:.:.:.:.:.:.	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:250:122,128:122:4375:128:4543:-333.752,0,-318.665	0/1:124:68,56:68:2444:56:1999:-142.855,0,-182.887	0/1:97:49,48:49:1752:48:1704:-124.444,0,-128.764	0/1:2:1,1:1:36:1:27:-2.09772,0,-2.99621	0/1:116:55,61:55:1976:61:2180:-161.547,0,-143.195	1/1:49:0,49:0:0:49:1729:-154.872,-14.7505,0	1/1:97:1,96:1:36:96:3386:-301.312,-25.6016,0	1/1:108:0,108:0:0:108:3856:-347.236,-32.5112,0	1/1:76:0,76:0:0:76:2703:-243.514,-22.8783,0	1/1:84:0,84:0:0:84:2969:-267.445,-25.2865,0	1/1:225:0,225:0:0:225:8025:-722.263,-67.7318,0	0/1:94:44,50:44:1584:50:1783:-132.455,0,-114.555	0/1:132:67,65:67:2392:65:2327:-169.943,0,-175.802	0/1:69:42,27:42:1474:27:949:-64.9517,0,-112.179	1/1:158:0,158:0:0:158:5655:-509.069,-47.5627,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:103:0,103:0:0:103:3665:-330.055,-31.0061,0	1/1:25:0,25:0:0:25:883:-79.7759,-7.52575,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:165:0,165:0:0:165:5891:-530.3,-49.67,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:42:0,42:0:0:42:1486:-134.033,-12.6433,0	1/1:206:2,204:2:72:204:7262:-646.797,-55.1755,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:192:0,192:0:0:192:6854:-616.843,-57.7978,0	0/1:143:83,60:83:2961:60:2123:-148.289,0,-223.675	0/1:66:44,22:44:1584:22:776:-50.2942,0,-122.984	1/1:43:1,42:1:36:42:1508:-132.416,-9.34602,0	1/1:140:2,138:2:72:138:4889:-433.31,-35.3075,0	0/1:60:6,54:6:216:54:1936:-156.455,0,-1.72871	1/1:61:0,61:0:0:61:2168:-195.385,-18.3628,0	1/1:96:1,95:1:36:95:3399:-302.527,-25.3006,0	0/1:111:42,69:42:1489:69:2463:-188.509,0,-100.888	0/1:41:25,16:25:885:16:572:-39.4712,0,-67.6243	0/1:117:64,53:64:2288:53:1879:-134.166,0,-170.961	0/1:61:26,35:26:932:35:1240:-93.5416,0,-65.836	1/1:148:0,148:0:0:148:5275:-474.873,-44.5524,0	0/1:131:72,59:72:2588:59:2084:-148.394,0,-193.733	0/1:97:55,42:55:1972:42:1512:-107.175,0,-148.555	0/1:103:49,54:49:1756:54:1924:-142.431,0,-127.318	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:71:0,71:0:0:71:2531:-228.041,-21.3731,0	0/1:77:39,38:39:1400:38:1352:-98.8011,0,-103.12	0/1:245:125,120:125:4477:120:4280:-311.627,0,-329.345	0/1:114:63,51:63:2256:51:1810:-128.863,0,-168.985	0/1:96:41,55:41:1476:55:1942:-146.154,0,-104.237	0/1:144:76,68:76:2732:68:2406:-173.447,0,-202.774	0/1:174:88,85:88:3164:85:3035:-220.942,0,-232.546	0/1:53:28,25:28:1004:25:900:-65.3664,0,-74.7213	1/1:110:0,110:0:0:110:3927:-353.623,-33.1133,0	1/1:96:1,95:1:36:95:3388:-301.537,-25.3006,0	1/1:73:0,73:0:0:73:2607:-234.878,-21.9752,0	0/1:140:81,59:81:2888:59:2080:-145.324,0,-218.01	0/1:85:53,32:53:1908:32:1137:-77.0494,0,-146.41	1/1:81:0,81:0:0:81:2858:-257.455,-24.3834,0	1/1:138:0,138:0:0:138:4894:-440.612,-41.5421,0
chr01	27599680	.	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chr01	27826108	.	T	C	133357	PASS	AB=0.480941;ABP=15.7575;AC=148;AF=0.787234;AN=188;AO=6360;CIGAR=1X;DP=8476;DPB=8476;DPRA=45.5591;EPP=13804.9;EPPR=4586.99;GTI=4;LEN=1;MEANALT=1.05376;MQM=52.527;MQMR=59.9749;NS=94;NUMALT=1;ODDS=1.01243;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227320;QR=75533;RO=2111;RPL=0;RPP=13813.6;RPPR=4586.99;RPR=6360;RUN=1;SAF=6359;SAP=13804.9;SAR=1;SRF=2111;SRP=4586.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:83:0,83:0:0:83:2974:-266.772,-24.9855,0	0/1:99:38,61:38:1364:61:2159:-162.767,0,-93.2587	1/1:126:0,126:0:0:126:4500:-403.306,-37.9298,0	1/1:182:1,181:1:36:181:6460:-576.594,-51.1892,0	0/1:79:48,31:48:1724:31:1116:-76.7076,0,-131.664	0/1:37:26,11:26:921:11:396:-24.7562,0,-72.0671	0/1:156:84,72:84:3001:72:2563:-182.312,0,-223.359	1/1:137:0,137:0:0:137:4893:-438.534,-41.2411,0	1/1:162:0,162:0:0:162:5775:-517.567,-48.7669,0	1/1:98:1,97:1:36:97:3464:-307.34,-25.9027,0	1/1:25:0,25:0:0:25:892:-80.3631,-7.52575,0	1/1:89:0,89:0:0:89:3188:-285.872,-26.7917,0	0/1:86:44,42:44:1580:42:1499:-108.544,0,-116.603	0/1:53:22,31:22:788:31:1112:-84.1919,0,-55.2902	0/1:82:45,37:45:1620:37:1328:-94.6424,0,-121.406	1/1:65:0,65:0:0:65:2323:-208.227,-19.567,0	1/1:30:0,30:0:0:30:1055:-94.7746,-9.0309,0	0/1:37:18,19:18:648:19:684:-50.4141,0,-47.5138	0/1:22:11,11:11:396:11:387:-28.4544,0,-29.3601	0/1:220:123,97:123:4377:97:3460:-244.451,0,-327.878	0/1:194:108,86:108:3823:86:3088:-218.834,0,-285.866	0/1:75:51,24:51:1824:24:864:-55.3581,0,-141.864	1/1:97:0,97:0:0:97:3476:-311.881,-29.1999,0	1/1:81:4,77:4:144:77:2764:-234.956,-11.0698,0	1/1:98:1,97:1:36:97:3463:-307.222,-25.9027,0	0/1:176:106,70:106:3808:70:2503:-172.283,0,-289.935	1/1:262:0,261:0:0:261:9302:-832.56,-78.5688,0	1/1:40:0,40:0:0:40:1428:-128.444,-12.0412,0	0/1:262:125,136:125:4492:136:4876:-359.515,0,-325.519	1/1:64:0,64:0:0:64:2283:-204.906,-19.2659,0	1/1:108:2,106:2:72:106:3779:-331.511,-25.6745,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	1/1:11:0,11:0:0:11:396:-35.8923,-3.31133,0	0/1:4:1,3:1:36:3:108:-8.84572,0,-2.39415	1/1:8:0,8:0:0:8:284:-25.5735,-2.40824,0	1/1:11:0,11:0:0:11:392:-35.5345,-3.31133,0	0/1:226:112,114:112:4028:114:4100:-299.812,0,-294.674	1/1:63:0,63:0:0:63:2256:-202.63,-18.9649,0	0/1:47:22,25:22:784:25:893:-65.9417,0,-56.7355	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:117:68,49:68:2432:49:1752:-121.881,0,-183.915	1/1:27:0,27:0:0:27:972:-87.5735,-8.12781,0	1/1:171:0,170:0:0:170:6059:-542.128,-51.1751,0	1/1:54:0,54:0:0:54:1936:-174.17,-16.2556,0	1/1:62:0,62:0:0:62:2197:-197.468,-18.6639,0	1/1:101:0,101:0:0:101:3568:-320.448,-30.404,0	1/1:106:0,106:0:0:106:3782:-338.727,-31.9092,0	0/1:157:76,81:76:2694:81:2889:-212.458,0,-195.44	0/1:78:29,49:29:1036:49:1742:-133.119,0,-70.0736	0/1:105:58,47:58:2080:47:1688:-120.117,0,-155.862	0/1:133:68,65:68:2429:65:2340:-170.369,0,-178.771	1/1:6:0,6:0:0:6:216:-19.7624,-1.80618,0	1/1:120:0,120:0:0:120:4300:-385.663,-36.1236,0	1/1:49:0,49:0:0:49:1748:-157.373,-14.7505,0	1/1:1:0,1:0:0:1:21:-2.09966,-0.30103,0	1/1:132:0,132:0:0:132:4732:-424.076,-39.736,0	1/1:56:0,56:0:0:56:2008:-180.617,-16.8577,0	1/1:6:0,6:0:0:6:216:-19.7762,-1.80618,0	0/1:22:13,9:13:468:9:324:-22.7772,0,-35.837	1/1:76:0,76:0:0:76:2709:-243.228,-22.8783,0	1/1:87:2,85:2:72:85:3052:-267.396,-19.3529,0	1/1:5:0,5:0:0:5:180:-16.5286,-1.50515,0	1/1:140:0,140:0:0:140:5024:-451.556,-42.1442,0	0/1:171:83,88:83:2984:88:3138:-230.239,0,-217.315	1/1:57:0,57:0:0:57:2025:-181.737,-17.1587,0	1/1:78:0,78:0:0:78:2792:-249.472,-23.4803,0	1/1:202:0,202:0:0:202:7232:-647.426,-60.8081,0	0/1:92:59,33:59:2120:33:1176:-78.3078,0,-162.184	1/1:26:0,26:0:0:26:936:-84.1666,-7.82678,0	1/1:74:0,74:0:0:74:2628:-235.009,-22.2762,0	1/1:48:0,48:0:0:48:1719:-154.439,-14.4494,0	1/1:24:0,24:0:0:24:855:-77.0054,-7.22472,0	0/1:130:49,81:49:1737:81:2904:-221.799,0,-117.479	0/1:105:48,56:48:1728:56:2016:-149.203,0,-124.285	1/1:163:0,163:0:0:163:5816:-521.076,-49.0679,0	1/1:151:0,151:0:0:151:5401:-484.579,-45.4555,0	0/1:115:59,56:59:2112:56:2012:-146.28,0,-155.731	1/1:117:3,114:3:108:114:4079:-355.223,-25.1453,0	1/1:16:0,16:0:0:16:576:-52.0438,-4.81648,0	0/1:90:42,48:42:1512:48:1724:-127.92,0,-109.282	0/1:135:69,66:69:2457:66:2348:-170.177,0,-180.744	0/1:283:136,146:136:4864:146:5223:-382.015,0,-352.773	0/1:53:32,21:32:1140:21:738:-50.5903,0,-86.9546	0/1:91:43,48:43:1533:48:1728:-127.815,0,-110.867	1/1:56:0,56:0:0:56:2012:-180.337,-16.8577,0	0/1:134:75,59:75:2700:59:2103:-148.327,0,-202.905	0/1:23:15,8:15:540:8:288:-18.9924,0,-42.0128	1/1:73:0,73:0:0:73:2585:-231.5,-21.9752,0	1/1:77:0,77:0:0:77:2748:-246.196,-23.1793,0	0/1:37:20,17:20:720:17:608:-43.7082,0,-53.9907	0/1:50:20,30:20:716:30:1076:-81.7394,0,-49.7162	0/1:64:48,16:48:1705:16:576:-32.8315,0,-134.468	1/1:110:1,109:1:36:109:3908:-347.472,-29.515,0	1/1:122:0,122:0:0:122:4376:-393.219,-36.7257,0
chr01	27826138	.	G	A	385201	PASS	AB=0.516813;ABP=23.3827;AC=149;AF=0.792553;AN=188;AO=14221;CIGAR=1X;DP=18269;DPB=18269;DPRA=0;EPP=30874.8;EPPR=8767.08;GTI=0;LEN=1;MEANALT=1.08511;MQM=56.2855;MQMR=59.9658;NS=94;NUMALT=1;ODDS=0.567588;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=507031;QR=140101;RO=4040;RPL=6380;RPP=328.941;RPPR=9.75261;RPR=7841;RUN=1;SAF=6381;SAP=328.049;SAR=7840;SRF=2075;SRP=9.51397;SRR=1965;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:171:0,171:0:0:171:6108:-547.836,-51.4761,0	0/1:227:96,131:96:3290:131:4667:-348.831,0,-227.986	1/1:313:1,312:1:36:312:11077:-990.665,-90.6241,0	1/1:419:1,418:1:36:418:14880:-1332.95,-122.533,0	0/1:149:71,78:71:2478:78:2791:-205.449,0,-178.419	0/1:72:40,32:40:1406:32:1152:-81.8572,0,-105.162	0/1:240:121,119:121:4251:119:4160:-300.755,0,-310.524	1/1:344:1,343:1:36:343:12267:-1096.99,-99.956,0	1/1:312:0,312:0:0:312:11072:-993.889,-93.9214,0	1/1:196:0,196:0:0:196:6974:-626.392,-59.0019,0	1/1:59:0,59:0:0:59:2094:-188.488,-17.7608,0	1/1:177:0,177:0:0:177:6315:-567.118,-53.2823,0	0/1:152:80,72:80:2745:72:2560:-183.822,0,-201.539	0/1:103:38,65:38:1277:65:2319:-177.561,0,-84.2146	0/1:149:72,77:72:2506:77:2726:-200.238,0,-180.939	1/1:139:0,139:0:0:139:4911:-441.177,-41.8432,0	1/1:72:0,72:0:0:72:2576:-231.565,-21.6742,0	0/1:67:33,34:33:1127:34:1216:-89.1214,0,-81.5619	0/1:41:22,19:22:753:19:684:-49.4442,0,-55.7426	0/1:390:188,202:188:6556:202:7212:-530.698,0,-472.733	0/1:414:224,189:224:7829:189:6751:-481.58,0,-580.127	0/1:175:96,79:96:3340:79:2817:-200.932,0,-248.14	1/1:292:4,288:4:144:288:10254:-907.498,-74.5871,0	1/1:184:11,173:11:371:173:6170:-520.953,-21.6744,0	1/1:204:1,203:1:36:203:7273:-649.51,-57.8118,0	0/1:462:216,245:216:7564:245:8748:-647.579,0,-541.83	1/1:498:0,498:0:0:498:17838:-1601.28,-149.913,0	1/1:76:0,76:0:0:76:2703:-243.095,-22.8783,0	0/1:600:297,302:297:10270:302:10752:-786.123,0,-743.732	1/1:205:0,205:0:0:205:7317:-657.484,-61.7112,0	1/1:226:2,224:2:72:224:7958:-707.38,-61.1961,0	1/1:5:0,5:0:0:5:169:-15.5317,-1.50515,0	1/1:23:0,23:0:0:23:824:-74.3982,-6.92369,0	0/1:8:3,5:3:93:5:180:-14.1189,0,-6.26849	1/1:25:0,25:0:0:25:891:-79.9209,-7.52575,0	1/1:14:0,14:0:0:14:504:-45.6078,-4.21442,0	0/1:386:188,198:188:6506:198:7064:-518.368,0,-469.445	1/1:196:1,195:1:36:195:6957:-620.968,-55.4036,0	0/1:63:27,36:27:927:36:1284:-95.9105,0,-64.7734	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:261:123,138:123:4245:138:4923:-363.842,0,-303.665	1/1:43:0,43:0:0:43:1510:-135.748,-12.9443,0	1/1:407:1,406:1:36:406:14543:-1300.71,-118.921,0	1/1:101:0,101:0:0:101:3604:-324.215,-30.404,0	1/1:123:0,123:0:0:123:4404:-395.204,-37.0267,0	1/1:228:0,228:0:0:228:8072:-725.341,-68.6348,0	1/1:238:0,238:0:0:238:8517:-764.491,-71.6451,0	0/1:399:183,215:183:6286:215:7677:-570.134,0,-445.821	0/1:191:62,129:62:2165:129:4630:-358.698,0,-137.619	0/1:295:144,151:144:4940:151:5404:-397.167,0,-355.956	0/1:247:107,140:107:3762:140:5003:-375.626,0,-264.372	1/1:16:0,16:0:0:16:576:-52.1472,-4.81648,0	1/1:316:0,316:0:0:316:11264:-1012.03,-95.1255,0	1/1:100:0,100:0:0:100:3541:-318.612,-30.103,0	1/1:5:0,5:0:0:5:180:-16.498,-1.50515,0	1/1:305:3,302:3:96:302:10751:-956.423,-82.8561,0	1/1:106:1,105:1:27:105:3760:-335.246,-29.2094,0	1/1:12:0,12:0:0:12:432:-39.2047,-3.61236,0	0/1:28:14,14:14:485:14:496:-36.4413,0,-35.5481	1/1:189:1,188:1:36:188:6696:-597.826,-53.2964,0	1/1:145:2,143:2:72:143:5112:-452.705,-36.8126,0	1/1:8:0,8:0:0:8:288:-26.2441,-2.40824,0	1/1:378:0,378:0:0:378:13521:-1215.76,-113.789,0	0/1:419:208,209:208:7163:209:7421:-540.53,0,-518.983	1/1:129:2,127:2:72:127:4518:-399.172,-31.9961,0	1/1:175:0,175:0:0:175:6229:-560.157,-52.6803,0	1/1:419:0,419:0:0:419:14990:-1344.64,-126.132,0	0/1:264:169,95:169:5861:95:3387:-225.316,0,-447.29	1/1:55:0,55:0:0:55:1967:-176.407,-16.5567,0	1/1:149:0,149:0:0:149:5290:-474.348,-44.8535,0	1/1:88:0,88:0:0:88:3150:-283.199,-26.4906,0	1/1:54:0,54:0:0:54:1916:-172.23,-16.2556,0	0/1:213:87,126:87:3006:126:4500:-340.364,0,-206.653	0/1:208:92,115:92:3215:115:4095:-304.951,0,-227.048	1/1:344:0,344:0:0:344:12280:-1102.27,-103.554,0	1/1:448:0,448:0:0:448:16007:-1438.43,-134.861,0	0/1:298:155,142:155:5311:142:5054:-364.849,0,-388.048	1/1:289:3,286:3:104:286:10202:-906.587,-77.2949,0	1/1:29:0,29:0:0:29:1026:-92.3621,-8.72987,0	0/1:239:102,137:102:3529:137:4924:-370.885,0,-245.877	0/1:242:113,129:113:3903:129:4594:-339.896,0,-278.433	0/1:511:221,290:221:7707:290:10332:-773.871,0,-539.85	0/1:104:60,44:60:2064:44:1568:-109.8,0,-154.723	0/1:140:64,76:64:2230:76:2683:-198.982,0,-158.821	1/1:108:0,108:0:0:108:3805:-341.745,-32.5112,0	0/1:225:116,109:116:4052:109:3901:-282.173,0,-297.141	0/1:35:23,12:23:798:12:428:-27.9578,0,-61.6006	1/1:139:1,138:1:36:138:4917:-437.3,-38.2486,0	1/1:137:2,135:2:72:135:4809:-424.523,-34.4044,0	0/1:61:34,27:34:1204:27:968:-68.8693,0,-90.303	0/1:95:37,58:37:1293:58:2056:-156.397,0,-88.0711	0/1:120:73,47:73:2538:47:1684:-115.636,0,-192.548	1/1:325:1,324:1:36:324:11556:-1035.27,-94.2365,0	1/1:214:0,214:0:0:214:7583:-681.651,-64.4204,0
chr01	27826143	.	G	A	383244	PASS	AB=0.50308;ABP=3.70583;AC=149;AF=0.792553;AN=188;AO=14133;CIGAR=1X;DP=18362;DPB=18362;DPRA=0;EPP=30683.7;EPPR=9153.6;GTI=2;LEN=1;MEANALT=1.07447;MQM=56.2763;MQMR=59.9761;NS=94;NUMALT=1;ODDS=1.52944;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=504892;QR=148737;RO=4222;RPL=6381;RPP=291.809;RPPR=3.01853;RPR=7752;RUN=1;SAF=6382;SAP=290.967;SAR=7751;SRF=2107;SRP=3.04322;SRR=2115;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:171:0,171:0:0:171:6110:-547.966,-51.4761,0	0/1:225:97,128:97:3411:128:4578:-341.945,0,-239.475	1/1:312:0,312:0:0:312:11129:-998.839,-93.9214,0	1/1:418:1,417:1:36:417:14825:-1327.8,-122.232,0	0/1:155:79,76:79:2802:76:2720:-196.934,0,-205.758	0/1:73:41,32:41:1445:32:1129:-79.4903,0,-108.369	0/1:239:124,115:124:4415:115:4132:-298.2,0,-325.578	1/1:340:1,339:1:36:339:12114:-1082.93,-98.7519,0	1/1:307:0,307:0:0:307:10997:-986.942,-92.4162,0	1/1:200:0,200:0:0:200:7124:-639.346,-60.206,0	1/1:60:1,59:1:32:59:2112:-186.896,-14.8625,0	1/1:175:0,175:0:0:175:6279:-563.864,-52.6803,0	0/1:152:82,70:82:2882:70:2512:-179.168,0,-213.862	0/1:112:46,66:46:1569:66:2350:-177.632,0,-107.78	0/1:150:74,76:74:2635:76:2731:-200.373,0,-192.243	1/1:138:0,138:0:0:138:4943:-443.839,-41.5421,0	1/1:72:0,72:0:0:72:2572:-231.212,-21.6742,0	0/1:70:37,33:37:1273:33:1184:-85.3433,0,-93.7959	0/1:44:25,19:25:875:19:672:-47.4625,0,-65.8208	0/1:399:201,198:201:7122:198:7058:-514.214,0,-520.934	0/1:422:233,188:233:8190:188:6707:-475.623,0,-610.182	0/1:187:109,78:109:3854:78:2800:-195.784,0,-290.766	1/1:287:2,285:2:72:285:10148:-905.11,-79.5589,0	1/1:186:14,172:14:474:172:6158:-510.601,-13.0094,0	1/1:204:1,203:1:36:203:7265:-648.32,-57.8118,0	0/1:477:235,242:235:8211:242:8648:-634.021,0,-595.427	1/1:492:0,492:0:0:492:17617:-1580.7,-148.107,0	1/1:75:0,75:0:0:75:2687:-241.644,-22.5773,0	0/1:597:302,295:302:10670:295:10542:-768.163,0,-780.512	1/1:200:0,200:0:0:200:7112:-639.208,-60.206,0	1/1:225:2,223:2:72:223:7959:-707.648,-60.895,0	1/1:5:0,5:0:0:5:180:-16.5258,-1.50515,0	1/1:21:0,21:0:0:21:752:-67.9375,-6.32163,0	0/1:8:3,5:3:104:5:180:-14.1189,0,-7.29457	1/1:24:0,24:0:0:24:860:-77.1339,-7.22472,0	1/1:14:0,14:0:0:14:504:-45.6078,-4.21442,0	0/1:394:193,201:193:6832:201:7174:-525.556,0,-496.264	1/1:195:0,195:0:0:195:6950:-623.45,-58.7009,0	0/1:71:35,36:35:1204:36:1268:-92.0562,0,-87.2867	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:263:128,135:128:4507:135:4801:-352.255,0,-326.632	1/1:43:0,43:0:0:43:1508:-134.86,-12.9443,0	1/1:400:1,399:1:27:399:14232:-1273.75,-117.712,0	1/1:101:0,101:0:0:101:3599:-323.774,-30.404,0	1/1:123:0,123:0:0:123:4392:-394.546,-37.0267,0	1/1:227:0,227:0:0:227:8093:-726.786,-68.3338,0	1/1:236:1,235:1:36:235:8361:-746.841,-67.4448,0	0/1:400:190,209:190:6651:209:7485:-552.702,0,-477.97	0/1:187:60,127:60:2119:127:4553:-352.961,0,-134.686	0/1:303:153,150:153:5362:150:5358:-390.618,0,-391.505	0/1:252:114,138:114:4024:138:4939:-368.364,0,-286.433	1/1:17:0,17:0:0:17:612:-55.3811,-5.11751,0	1/1:316:0,315:0:0:315:11241:-1009.64,-94.8245,0	1/1:98:0,98:0:0:98:3504:-315.137,-29.5009,0	1/1:5:0,5:0:0:5:180:-16.498,-1.50515,0	1/1:302:0,302:0:0:302:10771:-966.795,-90.9111,0	1/1:107:0,107:0:0:107:3815:-343.075,-32.2102,0	1/1:12:0,12:0:0:12:432:-39.2047,-3.61236,0	0/1:27:13,14:13:468:14:504:-37.4647,0,-34.3318	1/1:189:0,189:0:0:189:6756:-606.802,-56.8947,0	1/1:146:2,144:2:72:144:5147:-455.935,-37.1137,0	1/1:8:0,8:0:0:8:288:-26.2441,-2.40824,0	1/1:376:0,376:0:0:376:13475:-1211.6,-113.187,0	0/1:417:209,207:209:7372:207:7409:-538.775,0,-538.056	1/1:128:1,127:1:36:127:4520:-402.358,-34.9336,0	1/1:176:0,176:0:0:176:6299:-566.165,-52.9813,0	1/1:413:0,413:0:0:413:14713:-1320.44,-124.325,0	0/1:273:177,96:177:6268:96:3424:-225.709,0,-481.183	1/1:55:1,54:1:36:54:1931:-169.577,-12.9584,0	1/1:149:0,149:0:0:149:5360:-480.384,-44.8535,0	1/1:89:0,89:0:0:89:3175:-285.479,-26.7917,0	1/1:55:0,55:0:0:55:1966:-176.726,-16.5567,0	0/1:211:89,122:89:3144:122:4365:-328.845,0,-219.669	0/1:207:92,115:92:3250:115:4093:-304.722,0,-230.41	1/1:340:1,339:1:36:339:12140:-1086.22,-98.7519,0	1/1:444:0,444:0:0:444:15839:-1423.34,-133.657,0	0/1:305:162,143:162:5661:143:5115:-368.132,0,-417.806	1/1:293:3,290:3:108:290:10324:-916.813,-78.1266,0	1/1:29:0,29:0:0:29:1035:-93.1732,-8.72987,0	0/1:243:105,138:105:3735:138:4938:-370.963,0,-263.202	0/1:250:120,130:120:4251:130:4664:-343.8,0,-307.513	0/1:519:231,287:231:8128:287:10276:-765.396,0,-575.402	0/1:109:64,45:64:2231:45:1596:-110.812,0,-168.24	0/1:148:70,78:70:2504:78:2804:-207.454,0,-181.06	1/1:108:0,108:0:0:108:3867:-347.195,-32.5112,0	0/1:230:121,108:121:4263:108:3856:-276.576,0,-314.557	0/1:35:22,13:22:758:13:449:-29.8337,0,-58.0006	1/1:139:0,139:0:0:139:4984:-446.907,-41.8432,0	1/1:137:0,137:0:0:137:4892:-438.987,-41.2411,0	0/1:61:34,27:34:1203:27:964:-68.5137,0,-90.2122	0/1:100:42,57:42:1474:57:2040:-153.448,0,-102.938	0/1:123:75,48:75:2653:48:1724:-118.331,0,-201.989	1/1:324:1,323:1:36:323:11571:-1036.61,-93.9354,0	1/1:214:0,214:0:0:214:7659:-688.44,-64.4204,0
chr01	27826152	.	G	A	368592	PASS	AB=0.486601;ABP=16.278;AC=149;AF=0.792553;AN=188;AO=13689;CIGAR=1X;DP=18100;DPB=18100;DPRA=0;EPP=29476.9;EPPR=9505.5;GTI=3;LEN=1;MEANALT=1.03191;MQM=56.3847;MQMR=59.9757;NS=94;NUMALT=1;ODDS=2.30063;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=486922;QR=155949;RO=4408;RPL=6076;RPP=377.751;RPPR=55.3641;RPR=7613;RUN=1;SAF=6047;SAP=406.566;SAR=7642;SRF=2033;SRP=60.6292;SRR=2375;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:165:1,164:1:36:164:5809:-517.727,-46.0717,0	0/1:234:109,125:109:3871:125:4431:-325.749,0,-278.146	1/1:304:0,304:0:0:304:10806:-970.154,-91.5131,0	1/1:405:4,401:4:140:401:14262:-1268.04,-108.973,0	0/1:154:79,74:79:2784:74:2644:-191.735,0,-204.546	0/1:73:42,31:42:1491:31:1108:-77.9761,0,-112.509	0/1:233:121,112:121:4289:112:3981:-287.084,0,-316.047	1/1:337:1,336:1:36:336:11945:-1068.08,-97.8488,0	1/1:295:0,295:0:0:295:10532:-945.295,-88.8039,0	1/1:191:0,191:0:0:191:6801:-610.681,-57.4967,0	1/1:57:0,57:0:0:57:2027:-182.465,-17.1587,0	1/1:172:0,172:0:0:172:6134:-550.824,-51.7772,0	0/1:151:83,68:83:2908:68:2384:-168.536,0,-216.499	0/1:106:45,61:45:1597:61:2163:-162.192,0,-112.109	0/1:147:71,76:71:2523:76:2707:-199.117,0,-183.071	1/1:135:0,135:0:0:135:4819:-432.594,-40.6391,0	1/1:70:0,70:0:0:70:2486:-223.749,-21.0721,0	0/1:71:38,33:38:1336:33:1188:-85.4642,0,-99.164	0/1:44:26,18:26:923:18:640:-44.5932,0,-70.1414	0/1:398:207,191:207:7328:191:6754:-487.164,0,-539.766	0/1:431:252,179:252:8885:179:6382:-443.052,0,-669.858	0/1:193:115,78:115:4088:78:2784:-192.538,0,-310.007	1/1:281:2,279:2:72:279:9941:-885.901,-77.7527,0	1/1:179:14,165:14:500:165:5870:-482.397,-8.54819,0	1/1:201:1,200:1:36:200:7095:-633.215,-56.9088,0	0/1:492:254,238:254:8961:238:8511:-617.473,0,-658.371	1/1:473:0,473:0:0:473:16818:-1510.27,-142.387,0	1/1:74:0,74:0:0:74:2634:-236.92,-22.2762,0	0/1:616:323,293:323:11449:293:10393:-749.327,0,-844.862	1/1:199:0,199:0:0:199:7091:-637.48,-59.905,0	1/1:208:3,205:3:108:205:7300:-645.708,-52.5391,0	1/1:4:0,4:0:0:4:144:-13.3052,-1.20412,0	1/1:23:0,23:0:0:23:828:-74.7541,-6.92369,0	0/1:8:3,5:3:108:5:180:-14.1189,0,-7.66693	1/1:24:0,24:0:0:24:860:-77.1388,-7.22472,0	1/1:13:0,13:0:0:13:464:-42.0203,-3.91339,0	0/1:397:203,194:203:7182:194:6930:-502.844,0,-526.917	1/1:190:0,190:0:0:190:6754:-606.403,-57.1957,0	0/1:67:35,32:35:1220:32:1148:-82.4839,0,-89.9317	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:274:138,136:138:4868:136:4843:-352.681,0,-355.794	1/1:37:0,37:0:0:37:1319:-117.88,-11.1381,0	1/1:393:2,391:2:72:391:13938:-1244.02,-111.468,0	1/1:98:0,98:0:0:98:3488:-313.801,-29.5009,0	1/1:115:1,114:1:36:114:4035:-358.67,-31.0202,0	1/1:207:2,205:2:72:205:7281:-647.078,-55.4765,0	1/1:224:1,223:1:32:223:7938:-709.34,-64.2314,0	0/1:409:202,207:202:7161:207:7348:-537.494,0,-520.807	0/1:196:65,131:65:2298:131:4652:-359.259,0,-148.076	0/1:303:157,145:157:5545:145:5165:-373.252,0,-407.909	0/1:247:111,136:111:3903:136:4822:-359.343,0,-277.113	1/1:17:0,17:0:0:17:603:-54.5672,-5.11751,0	1/1:307:0,307:0:0:307:10961:-984.815,-92.4162,0	1/1:89:0,89:0:0:89:3173:-285.465,-26.7917,0	1/1:5:0,5:0:0:5:180:-16.498,-1.50515,0	1/1:294:0,294:0:0:294:10441:-937.779,-88.5028,0	1/1:100:0,100:0:0:100:3577:-321.618,-30.103,0	1/1:12:0,12:0:0:12:432:-39.2047,-3.61236,0	0/1:29:14,15:14:487:15:531:-39.2886,0,-35.4293	1/1:185:0,185:0:0:185:6562:-589.361,-55.6906,0	1/1:143:3,140:3:108:140:4959:-435.806,-32.9721,0	1/1:8:0,8:0:0:8:284:-25.8829,-2.40824,0	1/1:370:1,369:1:36:369:13089:-1173.25,-107.783,0	0/1:427:222,205:222:7900:205:7307:-527.374,0,-582.49	1/1:126:1,125:1:36:125:4385:-390.435,-34.3315,0	1/1:170:0,170:0:0:170:6031:-542.442,-51.1751,0	1/1:404:0,404:0:0:404:14401:-1292.62,-121.616,0	0/1:275:184,91:184:6523:91:3260:-210.383,0,-504.376	1/1:51:0,51:0:0:51:1820:-163.434,-15.3525,0	1/1:142:0,142:0:0:142:5039:-452.179,-42.7463,0	1/1:85:0,85:0:0:85:3028:-272.169,-25.5876,0	1/1:52:0,52:0:0:52:1856:-166.943,-15.6536,0	0/1:210:92,118:92:3252:118:4191:-313.587,0,-229.685	0/1:203:94,109:94:3317:109:3888:-287.506,0,-237.641	1/1:325:0,325:0:0:325:11562:-1038.11,-97.8348,0	1/1:431:0,431:0:0:431:15287:-1374.04,-129.744,0	0/1:306:170,136:170:5998:136:4857:-344.574,0,-447.797	1/1:284:4,280:4:144:280:9980:-882.867,-72.1789,0	1/1:28:0,28:0:0:28:983:-88.6061,-8.42884,0	0/1:244:111,133:111:3959:133:4755:-354.212,0,-283.051	0/1:247:121,126:121:4260:126:4460:-326.399,0,-309.142	0/1:516:237,278:237:8408:278:9875:-730.659,0,-601.343	0/1:109:68,41:68:2384:41:1450:-97.7586,0,-182.005	0/1:144:69,75:69:2472:75:2660:-195.735,0,-179.385	1/1:103:0,103:0:0:103:3687:-331.278,-31.0061,0	0/1:230:125,105:125:4384:105:3734:-265.673,0,-325.501	0/1:35:23,12:23:816:12:415:-26.7814,0,-63.2257	1/1:135:0,135:0:0:135:4798:-430.253,-40.6391,0	1/1:126:1,125:1:36:125:4455:-396.256,-34.351,0	0/1:59:33,26:33:1180:26:932:-66.241,0,-88.7473	0/1:100:42,58:42:1480:58:2057:-154.897,0,-103.389	0/1:126:79,47:79:2803:47:1688:-114.187,0,-214.581	1/1:317:1,316:1:36:316:11238:-1006.71,-91.8282,0	1/1:209:0,209:0:0:209:7402:-665.496,-62.9153,0
chr01	27834917	.	GTA	ATG,ATA	146497	PASS	AB=0.530649,0.466947;ABP=30.1641,34.5906;AC=149,39;AF=0.792553,0.207447;AN=188;AO=5312,1562;CIGAR=1X1M1X,1X2M;DP=6894;DPB=6894;DPRA=37.0538,1.38037;EPP=11529.2,3386.17;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.64516,2.18605;MQM=59.9932,59.9853;MQMR=60;NS=94;NUMALT=2;ODDS=0.530417;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=187520,55906;QR=36;RO=1;RPL=5311,1561;RPP=11529.2,3386.17;RPPR=5.18177;RPR=1,1;RUN=1,1;SAF=5312,1562;SAP=11537.9,3394.85;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15,0:0:0:15,0:530,0:-48.0318,-4.51545,0,-48.0318,-4.51545,-48.0318	1/2:70:0,35,35:0:0:35,35:1227,1252:-202.291,-102.449,-91.913,-100.196,0,-89.6601	1/1:81:0,81,0:0:0:81,0:2857,0:-257.367,-24.3834,0,-257.367,-24.3834,-257.367	1/1:176:0,176,0:0:0:176,0:6166,0:-555.045,-52.9813,0,-555.045,-52.9813,-555.045	1/2:55:0,32,23:0:0:32,23:1131,828:-160.028,-67.9204,-58.2875,-92.4646,0,-85.5409	1/2:37:0,22,15:0:0:22,15:788,536:-108.324,-44.0594,-37.4367,-64.6223,0,-60.1069	1/2:106:0,65,41:0:0:65,41:2282,1472:-306.151,-120.434,-100.867,-186.073,0,-173.731	1/1:111:0,111,0:0:0:111,0:3931,0:-353.985,-33.4143,0,-353.985,-33.4143,-353.985	1/1:64:0,64,0:0:0:64,0:2253,0:-203.031,-19.2659,0,-203.031,-19.2659,-203.031	1/1:91:0,91,0:0:0:91,0:3195,0:-287.773,-27.3937,0,-287.773,-27.3937,-287.773	1/1:41:0,41,0:0:0:41,0:1430,0:-128.991,-12.3422,0,-128.991,-12.3422,-128.991	1/1:48:0,48,0:0:0:48,0:1699,0:-153.195,-14.4494,0,-153.195,-14.4494,-153.195	1/2:49:0,26,23:0:0:26,23:914,828:-142.313,-67.9204,-60.0936,-74.7486,0,-67.8249	1/2:48:0,30,18:0:0:30,18:1058,648:-139.375,-53.2333,-44.2024,-86.4987,0,-81.0802	1/2:59:0,31,28:0:0:31,28:1099,1008:-172.137,-82.6075,-73.2756,-89.8871,0,-81.4583	1/1:46:0,46,0:0:0:46,0:1615,0:-145.637,-13.8474,0,-145.637,-13.8474,-145.637	1/1:43:0,43,0:0:0:43,0:1521,0:-137.182,-12.9443,0,-137.182,-12.9443,-137.182	1/2:41:0,22,19:0:0:22,19:779,684:-119.624,-56.1708,-49.5481,-63.8103,0,-58.0907	1/2:42:0,19,23:0:0:19,23:682,828:-123.551,-67.9204,-62.2009,-55.9903,0,-49.0666	1/2:151:0,76,75:0:0:76,75:2656,2688:-435.64,-219.587,-196.709,-216.407,0,-193.829	1/2:71:0,40,31:0:0:40,31:1392,1112:-204.238,-91.0594,-79.0182,-113.532,0,-104.2	1/2:111:0,39,71:0:0:39,71:1386,2556:-321.646,-208.704,-196.964,-113.084,0,-91.7109	1/1:53:0,53,0:0:0:53,0:1878,0:-169.298,-15.9546,0,-169.298,-15.9546,-169.298	1/1:40:0,39,0:0:0:39,0:1367,0:-122.967,-11.7402,0,-122.967,-11.7402,-122.967	1/1:68:0,68,0:0:0:68,0:2402,0:-216.438,-20.47,0,-216.438,-20.47,-216.438	1/2:253:0,134,119:0:0:134,119:4712,4272:-732.371,-348.823,-308.485,-383.904,0,-348.082	1/1:197:0,197,0:0:0:197,0:6974,0:-627.73,-59.3029,0,-627.73,-59.3029,-627.73	1/1:25:0,25,0:0:0:25,0:882,0:-79.6973,-7.52575,0,-79.6973,-7.52575,-79.6973	1/2:180:0,96,83:0:0:96,83:3408,2965:-519.417,-241.736,-212.837,-277.677,0,-252.691	1/1:78:0,78,0:0:0:78,0:2757,0:-248.372,-23.4803,0,-248.372,-23.4803,-248.372	1/1:83:0,82,0:0:0:82,0:2883,0:-259.346,-24.6845,0,-259.346,-24.6845,-259.346	1/1:14:0,14,0:0:0:14,0:502,0:-45.5172,-4.21442,0,-45.5172,-4.21442,-45.5172	1/1:19:0,19,0:0:0:19,0:676,0:-61.1674,-5.71957,0,-61.1674,-5.71957,-61.1674	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:6:0,6,0:0:0:6,0:208,0:-19.0585,-1.80618,0,-19.0585,-1.80618,-19.0585	1/1:14:0,14,0:0:0:14,0:487,0:-44.1591,-4.21442,0,-44.1591,-4.21442,-44.1591	1/2:191:0,102,89:0:0:102,89:3628,3186:-555.838,-260.172,-229.467,-296.022,0,-269.231	1/1:176:0,176,0:0:0:176,0:6256,0:-563.138,-52.9813,0,-563.138,-52.9813,-563.138	1/2:45:0,21,24:0:0:21,24:739,847:-129.483,-69.324,-63.0024,-60.5113,0,-53.2866	1/1:4:0,4,0:0:0:4,0:141,0:-13.0369,-1.20412,0,-13.0369,-1.20412,-13.0369	1/2:108:0,42,66:0:0:42,66:1495,2345:-313.285,-191.44,-178.797,-122.201,0,-102.333	1/1:35:0,35,0:0:0:35,0:1251,0:-112.895,-10.5361,0,-112.895,-10.5361,-112.895	1/1:16:0,16,0:0:0:16,0:563,0:-50.9994,-4.81648,0,-50.9994,-4.81648,-50.9994	1/1:64:0,64,0:0:0:64,0:2257,0:-203.392,-19.2659,0,-203.392,-19.2659,-203.392	1/1:67:0,67,0:0:0:67,0:2369,0:-213.468,-20.169,0,-213.468,-20.169,-213.468	1/1:57:0,57,0:0:0:57,0:1993,0:-179.642,-17.1587,0,-179.642,-17.1587,-179.642	1/1:81:0,80,1:0:0:80,1:2820,36:-253.679,-24.0824,0,-250.742,-20.7852,-250.441	1/2:161:0,108,52:0:0:108,52:3797,1841:-459.111,-150.043,-117.532,-309.149,0,-293.495	1/2:96:0,58,38:0:0:58,38:2043,1348:-276.506,-110.18,-92.72,-166.68,0,-155.241	1/2:83:0,32,51:0:0:32,51:1138,1828:-242.188,-149.448,-139.815,-93.0958,0,-77.7433	1/2:67:0,34,33:0:0:34,33:1178,1184:-192.666,-96.9343,-86.6993,-96.0845,0,-86.1505	1/1:8:0,8,0:0:0:8,0:280,0:-25.5387,-2.40824,0,-25.5387,-2.40824,-25.5387	1/1:119:0,119,0:0:0:119,0:4206,0:-378.722,-35.8226,0,-378.722,-35.8226,-378.722	1/1:57:0,57,0:0:0:57,0:2033,0:-183.242,-17.1587,0,-183.242,-17.1587,-183.242	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:108:0,107,0:0:0:107,0:3783,0:-340.379,-32.2102,0,-340.379,-32.2102,-340.379	1/1:26:0,25,0:0:0:25,0:888,0:-79.9846,-7.52575,0,-79.9846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chr01	27950228	.	G	A	92303.1	PASS	AB=0.440421;ABP=108.58;AC=147;AF=0.790323;AN=186;AO=4590;CIGAR=1X;DP=6526;DPB=6526;DPRA=17.7228;EPP=9944.03;EPPR=4183.1;GTI=9;LEN=1;MEANALT=1.06522;MQM=59.9179;MQMR=59.9647;NS=93;NUMALT=1;ODDS=1.56899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161183;QR=67059;RO=1929;RPL=0;RPP=9970.07;RPPR=4183.1;RPR=4590;RUN=1;SAF=3;SAP=9944.03;SAR=4587;SRF=0;SRP=4191.78;SRR=1929;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:324:-29.4605,-2.70927,0	0/1:65:31,34:31:1081:34:1210:-89.6394,0,-78.0294	1/1:112:2,110:2:68:110:3885:-343.39,-27.2577,0	1/1:121:0,121:0:0:121:4238:-381.59,-36.4246,0	0/1:49:34,15:34:1167:15:536:-33.8243,0,-90.5797	0/1:43:23,20:23:812:20:708:-51.1013,0,-60.4566	0/1:95:56,38:56:1936:38:1360:-94.044,0,-145.855	1/1:87:2,85:2:68:85:3002:-263.949,-19.7319,0	1/1:53:0,53:0:0:53:1858:-167.498,-15.9546,0	1/1:45:0,45:0:0:45:1582:-142.669,-13.5464,0	1/1:47:0,47:0:0:47:1603:-144.548,-14.1484,0	1/1:52:0,52:0:0:52:1826:-164.619,-15.6536,0	0/1:60:33,27:33:1139:27:951:-67.8425,0,-84.7527	0/1:52:22,30:22:768:30:1055:-79.6065,0,-53.7841	0/1:54:31,23:31:1069:23:815:-57.4151,0,-80.2597	1/1:34:0,34:0:0:34:1175:-106.051,-10.235,0	1/1:56:0,56:0:0:56:1950:-175.775,-16.8577,0	0/1:36:22,14:22:747:14:492:-33.7753,0,-56.7052	0/1:37:20,17:20:671:17:586:-41.9246,0,-49.5642	0/1:151:90,61:90:3163:61:2136:-147.05,0,-239.441	0/1:65:41,24:41:1390:24:822:-54.7237,0,-105.821	0/1:91:57,34:57:2002:34:1165:-77.7556,0,-153.059	1/1:60:1,59:1:36:59:2062:-182.25,-14.4635,0	1/1:70:4,66:4:144:66:2333:-196.914,-7.75848,0	1/1:47:0,47:0:0:47:1644:-147.817,-14.1484,0	0/1:290:190,97:190:6667:97:3463:-225.214,0,-513.45	1/1:120:0,120:0:0:120:4227:-380.613,-36.1236,0	1/1:37:0,37:0:0:37:1291:-116.489,-11.1381,0	0/1:235:115,119:115:4052:119:4163:-304.203,0,-294.216	1/1:73:0,73:0:0:73:2563:-230.917,-21.9752,0	1/1:95:0,95:0:0:95:3351:-301.808,-28.5979,0	.:.:.:.:.:.:.:.	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:146:70,76:70:2401:76:2646:-194.434,0,-172.397	1/1:52:0,52:0:0:52:1812:-163.358,-15.6536,0	0/1:57:34,23:34:1173:23:812:-56.2422,0,-88.713	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:121:53,68:53:1847:68:2381:-178.114,0,-130.082	1/1:39:0,39:0:0:39:1350:-121.795,-11.7402,0	1/1:95:0,94:0:0:94:3289:-295.096,-28.2968,0	1/1:52:0,52:0:0:52:1826:-164.62,-15.6536,0	1/1:51:0,51:0:0:51:1754:-158.138,-15.3525,0	1/1:59:1,58:1:36:58:2037:-180.002,-14.1625,0	1/1:50:0,50:0:0:50:1753:-158.052,-15.0515,0	0/1:150:85,65:85:2955:65:2307:-162.736,0,-221.029	0/1:102:59,43:59:2045:43:1501:-104.674,0,-153.611	0/1:154:79,75:79:2731:75:2636:-191.128,0,-199.672	0/1:111:59,52:59:2056:52:1845:-132.136,0,-151.896	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:71:0,71:0:0:71:2495:-224.801,-21.3731,0	1/1:66:1,65:1:36:65:2312:-204.743,-16.2697,0	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	1/1:70:0,70:0:0:70:2492:-224.533,-21.0721,0	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:69:0,69:0:0:69:2415:-217.576,-20.7711,0	1/1:99:0,99:0:0:99:3417:-307.748,-29.802,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:100:0,100:0:0:100:3536:-318.448,-30.103,0	0/1:140:76,64:76:2653:64:2278:-163.138,0,-196.871	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	1/1:25:0,25:0:0:25:849:-76.7185,-7.52575,0	1/1:100:1,99:1:36:99:3499:-311.523,-26.5047,0	0/1:19:11,8:11:392:8:279:-19.728,0,-29.9005	1/1:20:0,20:0:0:20:676:-61.1543,-6.0206,0	1/1:34:0,34:0:0:34:1208:-108.981,-10.235,0	1/1:58:0,58:0:0:58:2008:-180.992,-17.4597,0	1/1:20:0,20:0:0:20:688:-62.2384,-6.0206,0	0/1:86:43,43:43:1485:43:1540:-113.004,0,-108.049	0/1:29:19,10:19:667:10:348:-22.9253,0,-51.6248	1/1:116:0,116:0:0:116:4100:-369.186,-34.9195,0	1/1:160:1,159:1:36:159:5633:-503.495,-44.5665,0	0/1:179:112,67:112:3898:67:2335:-156.524,0,-297.096	1/1:140:1,138:1:36:138:4854:-432.812,-38.5848,0	1/1:7:0,7:0:0:7:235:-21.4779,-2.10721,0	0/1:100:53,47:53:1874:47:1657:-119.313,0,-138.835	0/1:98:45,53:45:1589:53:1869:-138.986,0,-113.797	0/1:180:105,75:105:3662:75:2669:-186.27,0,-275.601	0/1:76:41,35:41:1406:35:1214:-86.6828,0,-103.953	0/1:44:26,18:26:890:18:623:-43.1472,0,-67.0766	1/1:46:0,46:0:0:46:1579:-142.396,-13.8474,0	0/1:109:59,50:59:2020:50:1751:-124.929,0,-149.257	0/1:35:19,16:19:654:16:559:-40.1016,0,-48.644	1/1:48:0,48:0:0:48:1657:-149.412,-14.4494,0	1/1:58:0,58:0:0:58:2035:-183.421,-17.4597,0	0/1:46:24,22:24:812:22:761:-54.9529,0,-59.4729	0/1:80:50,30:50:1730:30:1063:-71.8993,0,-131.901	0/1:34:22,12:22:747:12:421:-27.988,0,-57.3073	1/1:58:0,58:0:0:58:2037:-183.6,-17.4597,0	1/1:66:0,66:0:0:66:2290:-206.358,-19.868,0
chr01	27950232	.	T	C	32362.3	PASS	AB=0.556284;ABP=99.5632;AC=39;AF=0.209677;AN=186;AO=1973;CIGAR=1X;DP=6735;DPB=6735;DPRA=1.7666;EPP=4287.33;EPPR=10295.8;GTI=8;LEN=1;MEANALT=1.02083;MQM=59.9463;MQMR=59.8613;NS=93;NUMALT=1;ODDS=1.29316;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68916;QR=167492;RO=4760;RPL=0;RPP=4287.33;RPPR=10321.9;RPR=1973;RUN=1;SAF=0;SAP=4287.33;SAR=1973;SRF=3;SRP=10313.2;SRR=4757;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.8747	0/1:64:30,34:30:1060:34:1207:-89.6691,0,-76.4454	0/0:112:111,1:111:3917:1:36:0,-30.1171,-349.128	0/0:132:132,0:132:4651:0:0:0,-39.736,-418.755	0/1:49:17,32:17:596:32:1125:-86.8064,0,-39.2173	0/1:41:20,21:20:716:21:737:-54.3094,0,-52.4255	0/1:100:40,60:40:1420:60:2119:-160.876,0,-97.9944	0/0:90:88,2:88:3108:2:72:0,-20.256,-273.105	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.547	0/0:46:46,0:46:1606:0:0:0,-13.8474,-144.828	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.639	0/0:56:56,0:56:1913:0:0:0,-16.8577,-172.444	0/1:61:28,33:28:960:33:1149:-85.3508,0,-68.3446	0/1:55:32,23:32:1134:23:810:-56.6629,0,-85.8106	0/1:52:19,33:19:680:33:1128:-86.1654,0,-45.8756	0/0:38:38,0:38:1287:0:0:0,-11.4391,-116.119	0/0:56:56,0:56:1929:0:0:0,-16.8577,-173.883	0/1:43:17,26:17:599:26:885:-67.0153,0,-41.2938	0/1:37:17,20:17:590:20:699:-52.0943,0,-42.2861	0/1:155:65,90:65:2264:90:3157:-237.686,0,-157.36	0/1:62:20,42:20:703:42:1476:-114.469,0,-44.9291	0/1:100:33,67:33:1176:67:2349:-181.563,0,-76.0405	0/0:61:60,1:60:2116:1:36:0,-14.7646,-187.108	0/0:73:67,6:67:2371:6:199:0,-3.73973,-195.283	0/0:50:50,0:50:1755:0:0:0,-15.0515,-157.805	0/1:302:103,199:103:3663:199:6987:-537.992,0,-238.835	0/0:131:131,0:131:4647:0:0:0,-39.4349,-418.396	0/0:34:34,0:34:1179:0:0:0,-10.235,-105.049	0/1:246:124,121:124:4418:121:4202:-304.253,0,-323.681	0/0:77:77,0:77:2713:0:0:0,-23.1793,-244.414	0/0:100:100,0:100:3547:0:0:0,-30.103,-319.309	.:.:.:.:.:.:.:.	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:151:80,71:80:2779:71:2488:-178.718,0,-204.897	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.163	0/1:56:22,34:22:764:34:1158:-87.6617,0,-52.2191	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:127:67,60:67:2357:60:2105:-151.485,0,-174.065	0/0:39:39,0:39:1362:0:0:0,-11.7402,-122.877	0/0:99:99,0:99:3502:0:0:0,-29.802,-315.279	0/0:52:51,1:51:1799:1:35:0,-12.1549,-158.321	0/0:49:49,0:49:1676:0:0:0,-14.7505,-151.123	0/0:63:62,1:62:2194:1:36:0,-15.3666,-194.126	0/0:53:53,0:53:1875:0:0:0,-15.9546,-169.028	0/1:163:69,94:69:2456:94:3260:-244.551,0,-171.526	0/1:105:45,60:45:1578:60:2080:-155.86,0,-110.701	0/1:151:74,77:74:2625:77:2712:-198.866,0,-191.041	0/1:111:56,55:56:1995:55:1928:-140.38,0,-145.632	0/0:8:8,0:8:272:0:0:0,-2.40824,-24.8112	0/0:69:69,0:69:2412:0:0:0,-20.7711,-217.318	0/0:66:65,1:65:2269:1:32:0,-16.6687,-201.27	0/0:20:20,0:20:699:0:0:0,-6.0206,-63.2325	0/0:73:73,0:73:2587:0:0:0,-21.9752,-233.08	0/0:42:42,0:42:1432:0:0:0,-12.6433,-129.169	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:74:74,0:74:2622:0:0:0,-22.2762,-235.929	0/0:104:102,2:102:3569:2:72:0,-24.4704,-314.586	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:104:104,0:104:3670:0:0:0,-31.3071,-330.504	0/1:138:64,74:64:2267:74:2601:-192.794,0,-162.748	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:108:107,1:107:3767:1:36:0,-28.913,-335.548	0/1:19:8,11:8:275:11:380:-28.8124,0,-19.3639	0/0:21:21,0:21:734:0:0:0,-6.32163,-66.3804	0/0:35:35,0:35:1235:0:0:0,-10.536,-111.435	0/0:66:66,0:66:2314:0:0:0,-19.868,-207.245	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:83:42,41:42:1469:41:1433:-104.278,0,-107.517	0/1:29:9,20:9:316:20:720:-56.3989,0,-20.049	0/0:125:125,0:125:4399:0:0:0,-37.6287,-396.084	0/0:158:157,1:157:5560:1:36:0,-43.9645,-496.93	0/1:181:71,110:71:2476:110:3793:-287.058,0,-168.608	0/0:136:136,0:136:4832:0:0:0,-40.9401,-434.536	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:105:51,54:51:1787:54:1913:-140.837,0,-129.504	0/1:99:55,44:55:1943:44:1556:-110.528,0,-145.344	0/1:180:78,102:78:2740:102:3614:-271.28,0,-192.658	0/1:80:39,41:39:1380:41:1409:-103.02,0,-100.416	0/1:44:18,26:18:586:26:900:-68.0629,0,-39.8024	0/0:48:48,0:48:1679:0:0:0,-14.4494,-151.396	0/1:109:54,55:54:1889:55:1920:-140.264,0,-137.344	0/1:36:18,18:18:627:18:585:-42.1181,0,-45.9173	0/0:54:54,0:54:1907:0:0:0,-16.2556,-171.907	0/0:59:59,0:59:2061:0:0:0,-17.7608,-185.76	0/1:49:24,25:24:827:25:875:-64.3157,0,-59.9375	0/1:85:34,51:34:1167:51:1752:-132.37,0,-79.7426	0/1:35:9,26:9:311:26:898:-70.5962,0,-17.7852	0/0:65:64,0:64:2256:0:0:0,-19.2659,-203.079	0/0:72:72,0:72:2524:0:0:0,-21.6742,-227.394
chr01	27957740	.	C	G	358444	PASS	AB=0.474883;ABP=54.7142;AC=148;AF=0.787234;AN=188;AO=13612;CIGAR=1X;DP=18604;DPB=18604;DPRA=100.011;EPP=29561.1;EPPR=10786.5;GTI=8;LEN=1;MEANALT=1.17204;MQM=59.9196;MQMR=59.9873;NS=94;NUMALT=1;ODDS=0.547905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=477517;QR=174995;RO=4974;RPL=6669;RPP=14.9869;RPPR=12.0629;RPR=6943;RUN=1;SAF=6669;SAP=14.9869;SAR=6943;SRF=2417;SRP=11.567;SRR=2557;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	0/1:273:131,142:131:4582:142:5007:-368.598,0,-330.369	1/1:256:0,256:0:0:256:8965:-806.787,-77.0637,0	1/1:458:0,458:0:0:458:16074:-1446.34,-137.872,0	0/1:201:102,99:102:3613:99:3479:-252.814,0,-264.87	0/1:128:60,68:60:2074:68:2394:-177.183,0,-148.396	0/1:404:212,192:212:7467:192:6731:-484.17,0,-550.465	1/1:302:0,302:0:0:302:10508:-945.589,-90.9111,0	1/1:237:0,237:0:0:237:8323:-748.995,-71.3441,0	1/1:278:0,278:0:0:278:9766:-878.897,-83.6863,0	1/1:104:1,103:1:36:103:3620:-322.408,-27.7088,0	1/1:141:0,141:0:0:141:4863:-437.832,-42.4452,0	0/1:170:83,86:83:2926:86:2978:-217.165,0,-212.491	0/1:137:75,62:75:2584:62:2137:-151.352,0,-191.566	0/1:178:73,105:73:2585:105:3697:-279.34,0,-179.315	1/1:132:0,132:0:0:132:4587:-412.994,-39.736,0	1/1:143:0,143:0:0:143:5027:-452.494,-43.0473,0	0/1:122:62,60:62:2185:60:2104:-152.901,0,-160.189	0/1:102:57,45:57:1954:45:1563:-110.251,0,-145.425	0/1:507:254,252:254:8947:252:8908:-649.027,0,-652.538	0/1:386:186,200:186:6569:200:6998:-513.267,0,-475.101	0/1:160:108,52:108:3797:52:1828:-116.633,0,-293.763	1/1:143:2,141:2:72:141:4973:-440.885,-36.2106,0	1/1:252:18,234:18:630:234:8176:-678.825,-18.8349,0	1/1:110:0,110:0:0:110:3898:-350.787,-33.1133,0	0/1:587:309,277:309:10894:277:9823:-707.237,0,-803.605	1/1:384:0,384:0:0:384:13583:-1222.26,-115.596,0	1/1:80:0,80:0:0:80:2804:-252.598,-24.0824,0	0/1:574:277,297:277:9774:297:10467:-769.148,0,-706.827	1/1:182:1,181:1:36:181:6348:-567.791,-51.1892,0	1/1:213:0,212:0:0:212:7470:-671.976,-63.8184,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:14:0,14:0:0:14:485:-43.977,-4.21442,0	0/1:10:2,8:2:72:8:261:-20.7975,0,-3.82642	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:19:0,19:0:0:19:668:-60.4457,-5.71957,0	0/1:402:223,178:223:7783:178:6197:-436.767,0,-579.445	1/1:229:0,229:0:0:229:8032:-722.913,-68.9359,0	0/1:132:77,55:77:2692:55:1869:-128.742,0,-202.79	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:338:168,170:168:5868:170:5993:-437.735,0,-426.491	1/1:75:0,75:0:0:75:2629:-236.856,-22.5773,0	1/1:234:0,233:0:0:233:8255:-742.607,-70.14,0	1/1:162:0,162:0:0:162:5670:-510.427,-48.7669,0	1/1:155:0,155:0:0:155:5404:-486.339,-46.6597,0	1/1:193:1,192:1:36:192:6795:-608.027,-54.5005,0	1/1:222:0,222:0:0:222:7804:-702.36,-66.8287,0	0/1:287:153,134:153:5437:134:4729:-339.376,0,-403.066	0/1:229:97,131:97:3415:131:4627:-347.602,0,-238.571	0/1:266:114,150:114:4033:150:5255:-393.262,0,-283.327	0/1:378:230,148:230:8114:148:5193:-353.723,0,-616.492	1/1:13:0,13:0:0:13:451:-40.9198,-3.91339,0	1/1:312:0,312:0:0:312:10910:-981.548,-93.9214,0	1/1:93:0,93:0:0:93:3229:-290.831,-27.9958,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:264:0,264:0:0:264:9321:-838.865,-79.4719,0	1/1:126:0,126:0:0:126:4447:-400.403,-37.9298,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:25:15,10:15:536:10:343:-23.6748,0,-41.0491	1/1:170:0,169:0:0:169:5946:-534.594,-50.8741,0	1/1:209:0,209:0:0:209:7262:-653.642,-62.9153,0	1/1:16:0,16:0:0:16:570:-51.6324,-4.81648,0	1/1:277:1,275:1:27:275:9696:-869.854,-80.6994,0	0/1:366:194,172:194:6876:172:6010:-430.835,0,-508.733	1/1:150:0,150:0:0:150:5244:-472.098,-45.1545,0	1/1:201:0,201:0:0:201:7076:-636.742,-60.507,0	1/1:300:3,297:3:108:297:10375:-923.459,-80.2338,0	0/1:232:157,75:157:5549:75:2613:-165.572,0,-429.697	1/1:61:0,61:0:0:61:2147:-193.489,-18.3628,0	1/1:204:0,204:0:0:204:7238:-651.475,-61.4101,0	1/1:183:0,183:0:0:183:6484:-583.651,-55.0885,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:164:75,89:75:2658:89:3115:-231.207,0,-190.089	0/1:137:91,46:91:3206:46:1583:-101.511,0,-247.522	1/1:307:0,307:0:0:307:10737:-966.095,-92.4162,0	1/1:320:0,320:0:0:320:11321:-1018.78,-96.3296,0	0/1:256:136,119:136:4774:119:4121:-293.623,0,-352.699	1/1:151:3,148:3:108:148:5190:-456.9,-35.3804,0	1/1:17:0,17:0:0:17:600:-54.3283,-5.11751,0	0/1:278:129,149:129:4593:149:5250:-388.948,0,-329.849	0/1:270:152,116:152:5327:116:4082:-286.463,0,-398.531	0/1:593:314,276:314:11090:276:9714:-696.241,0,-819.878	0/1:224:122,102:122:4241:102:3555:-252.73,0,-314.442	0/1:166:78,88:78:2702:88:3072:-226.637,0,-193.455	1/1:203:0,203:0:0:203:6984:-628.62,-61.1091,0	0/1:287:148,139:148:5197:139:4844:-349.727,0,-381.109	0/1:88:41,47:41:1438:47:1646:-121.935,0,-103.221	1/1:153:0,153:0:0:153:5286:-475.877,-46.0576,0	1/1:125:0,124:0:0:124:4313:-387.99,-37.3277,0	0/1:82:43,39:43:1495:39:1361:-98.1,0,-110.158	0/1:144:81,63:81:2870:63:2179:-153.019,0,-215.185	0/1:153:113,40:113:3953:40:1399:-80.1487,0,-309.909	1/1:221:0,221:0:0:221:7712:-694.128,-66.5276,0	1/1:246:0,246:0:0:246:8626:-776.344,-74.0534,0
chr01	27957779	.	CAAC	TAAT,CAAT	204732	PASS	AB=0.477145,0.521652;ABP=25.641,23.3215;AC=147,39;AF=0.790323,0.209677;AN=186;AO=7089,2616;CIGAR=1X2M1X,3M1X;DP=9716;DPB=9718.5;DPRA=105.598,1.51737;EPP=15396.6,5683.58;EPPR=5.18177;GTI=4;LEN=4,1;MEANALT=1.55435,2.11905;MQM=59.8541,60;MQMR=60;NS=93;NUMALT=2;ODDS=0.5231;PAIRED=0,0;PAIREDR=0;PAO=10,0;PQA=356,0;PQR=0;PRO=0;QA=249241,93615;QR=36;RO=1;RPL=7089,2616;RPP=15396.6,5683.58;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=15396.6,5683.58;SAR=7089,2616;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22,0:0:0:22,0:765,0:-69.1698,-6.62266,0,-69.1698,-6.62266,-69.1698	1/2:162:0,85,76:0:0:85,76:2958,2736:-463.904,-223.392,-197.804,-240.654,0,-217.776	1/1:106:0,106,0:0:0:106,0:3750,0:-337.286,-31.9092,0,-337.286,-31.9092,-337.286	1/1:218:0,218,0:0:0:218,0:7658,0:-688.884,-65.6245,0,-688.884,-65.6245,-688.884	1/2:120:0,59,61:0:0:59,61:2063,2192:-347.009,-179.183,-161.422,-168.181,0,-149.818	1/2:75:0,38,37:0:0:38,37:1344,1320:-217.428,-107.964,-96.5247,-109.819,0,-98.6809	1/2:162:0,75,87:0:0:75,87:2630,3105:-467.505,-253.486,-230.909,-214.372,0,-188.182	1/1:206:0,206,0:0:0:206,0:7227,0:-650.444,-62.0122,0,-650.444,-62.0122,-650.444	1/1:111:0,111,0:0:0:111,0:3888,0:-350.028,-33.4143,0,-350.028,-33.4143,-350.028	1/1:136:0,136,0:0:0:136,0:4787,0:-430.628,-40.9401,0,-430.628,-40.9401,-430.628	1/1:66:0,65,0:0:0:65,0:2320,0:-208.721,-19.567,0,-208.721,-19.567,-208.721	1/1:82:0,81,0:0:0:81,0:2859,0:-257.296,-24.3834,0,-257.296,-24.3834,-257.296	1/2:91:0,40,51:0:0:40,51:1413,1832:-264.876,-149.808,-137.767,-115.423,0,-100.071	1/2:76:0,38,38:0:0:38,38:1315,1360:-218.118,-111.261,-99.8223,-107.208,0,-95.7688	1/2:84:0,48,36:0:0:48,36:1684,1292:-242.765,-105.747,-91.2972,-137.374,0,-126.537	1/1:74:0,74,0:0:0:74,0:2632,0:-237.121,-22.2762,0,-237.121,-22.2762,-237.121	1/1:80:0,79,1:0:0:79,1:2817,36:-253.324,-23.7814,0,-250.386,-20.4841,-250.085	1/2:70:0,37,33:0:0:37,33:1297,1180:-202.108,-96.5741,-85.4359,-105.888,0,-95.9543	1/2:56:0,23,33:0:0:23,33:809,1184:-162.786,-96.9343,-90.0106,-66.2058,0,-56.2718	1/2:252:0,120,132:0:0:120,132:4223,4720:-729.002,-385.224,-349.1,-344.133,0,-304.397	1/2:199:0,105,94:0:0:105,94:3652,3380:-572.189,-276.118,-244.509,-296.425,0,-268.128	1/2:77:0,27,49:0:0:27,49:941,1748:-219.096,-142.572,-134.444,-76.5922,0,-61.8417	1/1:50:0,50,0:0:0:50,0:1768,0:-159.402,-15.0515,0,-159.402,-15.0515,-159.402	1/1:114:0,106,8:0:0:106,8:3702,288:-333,-31.9092,0,-309.5,-8.05001,-307.091	1/1:32:0,32,0:0:0:32,0:1107,0:-99.7452,-9.63296,0,-99.7452,-9.63296,-99.7452	1/2:334:0,158,176:0:0:158,176:5550,6265:-962.681,-510.966,-463.403,-452.069,0,-399.088	1/1:192:0,192,0:0:0:192,0:6745,0:-607.134,-57.7978,0,-607.134,-57.7978,-607.134	1/1:43:0,43,0:0:0:43,0:1518,0:-136.913,-12.9443,0,-136.913,-12.9443,-136.913	1/2:238:0,116,122:0:0:116,122:4089,4357:-688.488,-355.578,-320.659,-333.265,0,-296.539	1/1:108:0,108,0:0:0:108,0:3800,0:-342.174,-32.5112,0,-342.174,-32.5112,-342.174	1/1:115:0,115,0:0:0:115,0:4006,0:-360.722,-34.6185,0,-360.722,-34.6185,-360.722	1/1:3:0,3,0:0:0:3,0:107,0:-9.98217,-0.90309,0,-9.98217,-0.90309,-9.98217	1/1:8:0,8,0:0:0:8,0:286,0:-26.0856,-2.40824,0,-26.0856,-2.40824,-26.0856	1/1:8:0,8,0:0:0:8,0:267,0:-24.3547,-2.40824,0,-24.3547,-2.40824,-24.3547	.:.:.:.:.:.:.:.	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:205:0,93,112:0:0:93,112:3251,4016:-591.932,-327.553,-299.557,-264.372,0,-230.657	1/1:123:0,123,0:0:0:123,0:4310,0:-388.084,-37.0267,0,-388.084,-37.0267,-388.084	1/2:81:0,36,45:0:0:36,45:1261,1616:-234.785,-132.184,-121.347,-102.955,0,-89.4088	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:179:0,91,88:0:0:91,88:3223,3134:-518.338,-255.793,-228.399,-262.901,0,-236.41	1/1:37:0,37,0:0:0:37,0:1315,0:-118.652,-11.1381,0,-118.652,-11.1381,-118.652	1/1:123:0,123,0:0:0:123,0:4338,0:-390.601,-37.0267,0,-390.601,-37.0267,-390.601	1/1:89:0,89,0:0:0:89,0:3142,0:-283.002,-26.7917,0,-283.002,-26.7917,-283.002	1/1:85:0,85,0:0:0:85,0:2992,0:-269.512,-25.5876,0,-269.512,-25.5876,-269.512	1/1:78:1,77,0:1:36:77,0:2656,0:-235.69,-19.8821,0,-235.991,-23.1793,-238.928	1/1:127:0,127,0:0:0:127,0:4440,0:-399.38,-38.2308,0,-399.38,-38.2308,-399.38	1/2:183:0,87,96:0:0:87,96:3062,3425:-528.833,-279.564,-253.374,-249.623,0,-220.724	1/2:96:0,51,45:0:0:51,45:1792,1616:-278.038,-132.184,-116.831,-146.209,0,-132.663	1/2:149:0,83,65:0:0:83,65:2928,2332:-428.631,-190.213,-165.227,-238.414,0,-218.847	1/2:182:0,68,114:0:0:68,114:2359,4059:-522.933,-331.182,-310.712,-192.101,0,-157.784	1/1:7:0,7,0:0:0:7,0:246,0:-22.4821,-2.10721,0,-22.4821,-2.10721,-22.4821	1/1:161:0,161,0:0:0:161,0:5650,0:-508.376,-48.4658,0,-508.376,-48.4658,-508.376	1/1:59:0,59,0:0:0:59,0:2070,0:-186.556,-17.7608,0,-186.556,-17.7608,-186.556	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:143:0,143,0:0:0:143,0:5044,0:-454.113,-43.0473,0,-454.113,-43.0473,-454.113	1/1:31:0,31,0:0:0:31,0:1105,0:-99.7615,-9.33193,0,-99.7615,-9.33193,-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chr01	27959981	.	T	C	133555	PASS	AB=0.525282;ABP=20.2485;AC=147;AF=0.790323;AN=186;AO=5338;CIGAR=1X;DP=6976;DPB=6976;DPRA=0;EPP=4923.8;EPPR=175.24;GTI=3;LEN=1;MEANALT=1.04301;MQM=58.8297;MQMR=59.9394;NS=93;NUMALT=1;ODDS=0.0458356;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189276;QR=58540;RO=1634;RPL=32;RPP=11318;RPPR=175.24;RPR=5306;RUN=1;SAF=4440;SAP=5106.57;SAR=898;SRF=1634;SRP=3551.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:1004:-90.6059,-8.42884,0	0/1:124:63,60:63:2260:60:2089:-150.889,0,-166.416	1/1:148:1,147:1:36:147:5181:-462.491,-40.9542,0	1/1:178:1,177:1:36:177:6298:-563.236,-49.9851,0	0/1:82:57,25:57:2034:25:900:-56.6056,0,-158.645	0/1:61:40,21:40:1436:21:734:-47.9991,0,-111.118	0/1:91:42,49:42:1496:49:1739:-129.39,0,-107.541	1/1:162:0,162:0:0:162:5766:-518.813,-48.7669,0	1/1:84:0,84:0:0:84:2987:-268.885,-25.2865,0	1/1:107:0,107:0:0:107:3773:-339.771,-32.2102,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:30:0,30:0:0:30:1072:-96.7878,-9.0309,0	0/1:25:10,15:10:360:15:527:-40.2344,0,-25.2186	0/1:24:10,14:10:356:14:492:-37.3876,0,-25.1565	0/1:21:3,18:3:108:18:644:-51.969,0,-3.75354	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:47:0,47:0:0:47:1655:-149.228,-14.1484,0	0/1:33:12,21:12:432:21:743:-57.2593,0,-29.2859	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0803	0/1:155:74,81:74:2648:81:2884:-213.053,0,-191.907	0/1:78:39,39:39:1391:39:1400:-102.819,0,-101.876	0/0:170:154,16:154:5536:16:559:0,-0.674854,-447.862	1/1:70:1,69:1:36:69:2435:-215.711,-17.4738,0	1/1:120:2,118:2:72:118:4181:-369.431,-29.2869,0	1/1:78:0,78:0:0:78:2780:-250.224,-23.4803,0	0/1:212:109,103:109:3894:103:3665:-266.175,0,-286.835	1/1:176:0,176:0:0:176:6239:-561.314,-52.9813,0	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	0/1:242:99,143:99:3560:143:5107:-386.868,0,-247.757	1/1:75:0,75:0:0:75:2669:-240.349,-22.5773,0	1/1:96:0,96:0:0:96:3387:-304.998,-28.8989,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	0/1:63:17,46:17:608:46:1620:-127.121,0,-36.0871	1/1:122:0,122:0:0:122:4337:-390.254,-36.7257,0	0/1:32:10,22:10:360:22:766:-59.6255,0,-23.1113	.:.:.:.:.:.:.:.	0/1:163:75,88:75:2684:88:3093:-229.38,0,-192.735	1/1:13:0,13:0:0:13:456:-41.3732,-3.91339,0	1/1:143:0,143:0:0:143:5048:-454,-43.0473,0	1/1:27:1,26:1:36:26:928:-80.24,-4.52954,0	1/1:44:0,44:0:0:44:1564:-141.052,-13.2453,0	1/1:79:0,79:0:0:79:2784:-250.571,-23.7814,0	1/1:91:0,91:0:0:91:3242:-291.858,-27.3937,0	0/1:156:72,84:72:2584:84:2973:-220.552,0,-185.848	0/1:86:39,47:39:1404:47:1668:-124.37,0,-100.77	0/1:95:31,64:31:1116:64:2279:-176.745,0,-72.1538	0/1:104:45,59:45:1607:59:2090:-156.984,0,-113.612	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:143:0,143:0:0:143:5019:-451.039,-43.0473,0	1/1:52:0,52:0:0:52:1835:-165.393,-15.6536,0	1/1:21:0,21:0:0:21:735:-66.4714,-6.32163,0	1/1:132:0,132:0:0:132:4732:-425.877,-39.736,0	1/1:25:0,25:0:0:25:862:-77.8669,-7.52575,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:61:0,61:0:0:61:2129:-191.781,-18.3628,0	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:192:0,192:0:0:192:6838:-615.487,-57.7978,0	0/1:232:93,139:93:3340:139:4940:-373.067,0,-230.977	1/1:65:0,65:0:0:65:2286:-205.995,-19.567,0	1/1:96:0,96:0:0:96:3393:-305.421,-28.8989,0	1/1:125:1,124:1:36:124:4402:-392.636,-34.0305,0	0/1:92:58,34:58:2072:34:1199:-80.4289,0,-159.056	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:61:0,60:0:0:60:2139:-192.33,-18.0618,0	1/1:53:0,53:0:0:53:1887:-170.108,-15.9546,0	1/1:13:0,13:0:0:13:456:-41.3732,-3.91339,0	0/1:94:53,41:53:1896:41:1455:-102.759,0,-142.619	0/1:27:13,14:13:468:14:497:-36.9365,0,-34.33	1/1:120:0,120:0:0:120:4233:-381.012,-36.1236,0	1/1:116:0,115:0:0:115:4095:-368.375,-34.6185,0	0/1:147:106,41:106:3786:41:1443:-85.8656,0,-296.684	1/1:83:0,82:0:0:82:2923:-262.941,-24.6845,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:94:38,56:38:1360:56:2008:-152.613,0,-94.4029	0/1:125:57,68:57:2035:68:2402:-178.002,0,-145.791	0/1:188:91,97:91:3267:97:3448:-253.854,0,-237.655	0/1:61:22,39:22:788:39:1379:-106.045,0,-52.882	0/1:32:13,19:13:468:19:684:-52.2574,0,-32.8267	1/1:27:0,27:0:0:27:955:-86.2648,-8.12781,0	0/1:48:21,27:21:756:27:943:-70.6732,0,-53.9178	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3577	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:39:0,39:0:0:39:1367:-123.305,-11.7402,0	0/1:12:4,8:4:135:8:288:-22.655,0,-8.87015	0/1:35:16,19:16:567:19:669:-49.9979,0,-40.8238	0/1:26:17,9:17:612:9:320:-21.3156,0,-47.5867	1/1:82:0,82:0:0:82:2906:-261.776,-24.6845,0	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0
chr01	27987151	.	C	T	342723	PASS	AB=0.500127;ABP=3.01141;AC=149;AF=0.792553;AN=188;AO=12642;CIGAR=1X;DP=16600;DPB=16600;DPRA=0;EPP=27446.1;EPPR=8571.64;GTI=3;LEN=1;MEANALT=1.07447;MQM=59.7899;MQMR=59.8653;NS=94;NUMALT=1;ODDS=0.653177;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=452020;QR=139331;RO=3950;RPL=5519;RPP=444.934;RPPR=120.349;RPR=7123;RUN=1;SAF=5520;SAP=443.833;SAR=7122;SRF=1745;SRP=119.335;SRR=2205;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:98:0,98:0:0:98:3503:-315.473,-29.5009,0	0/1:295:140,153:140:4893:153:5487:-405.313,0,-351.952	1/1:331:0,331:0:0:331:11828:-1064.08,-99.6409,0	1/1:352:1,351:1:36:351:12555:-1126.15,-102.364,0	0/1:148:74,74:74:2652:74:2659:-194.998,0,-194.341	0/1:125:60,65:60:2117:65:2332:-172.511,0,-153.143	0/1:252:123,129:123:4362:129:4599:-338.198,0,-316.89	1/1:246:0,246:0:0:246:8794:-791.21,-74.0534,0	1/1:212:0,212:0:0:212:7579:-681.161,-63.8184,0	1/1:212:0,212:0:0:212:7585:-681.897,-63.8184,0	1/1:209:0,209:0:0:209:7472:-672.448,-62.9153,0	1/1:204:0,204:0:0:204:7268:-654.1,-61.4101,0	0/1:173:88,85:88:3062:85:3056:-223.19,0,-223.709	0/1:176:87,89:87:3036:89:3200:-235.229,0,-220.443	0/1:142:62,80:62:2129:80:2855:-214.286,0,-149.127	1/1:150:1,149:1:36:149:5347:-477.734,-41.5562,0	1/1:249:2,247:2:72:247:8828:-787.625,-68.1197,0	0/1:143:65,78:65:2274:78:2800:-209.184,0,-161.862	0/1:128:71,57:71:2507:57:2035:-144.883,0,-187.349	0/1:380:192,188:192:6806:188:6703:-488.945,0,-498.182	0/1:271:141,130:141:4966:130:4659:-337.891,0,-365.338	0/1:91:67,24:67:2378:24:856:-49.9674,0,-186.883	1/1:112:1,111:1:36:111:3972:-354.068,-30.1171,0	1/1:155:10,145:10:360:145:5185:-434.024,-13.9153,0	1/1:134:1,133:1:36:133:4755:-424.5,-36.7397,0	0/1:430:223,207:223:7918:207:7387:-535.415,0,-583.206	1/1:379:0,379:0:0:379:13541:-1217.8,-114.09,0	1/1:90:1,89:1:36:89:3187:-283.448,-23.4944,0	0/1:418:191,226:191:6801:226:8069:-599.844,0,-486.268	1/1:190:2,188:2:72:188:6732:-599.074,-50.359,0	1/1:202:0,201:0:0:201:7193:-647.047,-60.507,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:23:0,23:0:0:23:820:-74.1206,-6.92369,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:212:-19.4176,-1.80618,0	0/1:386:195,191:195:6766:191:6828:-498.38,0,-492.823	1/1:210:0,210:0:0:210:7531:-677.805,-63.2163,0	0/1:187:88,99:88:3064:99:3518:-260.408,0,-219.694	0/1:7:1,6:1:36:6:203:-16.494,0,-1.49106	0/1:249:122,127:122:4322:127:4552:-334.877,0,-314.195	1/1:89:0,89:0:0:89:3191:-287.412,-26.7917,0	1/1:257:0,257:0:0:257:9161:-824.38,-77.3647,0	1/1:172:0,172:0:0:172:6159:-554.398,-51.7772,0	1/1:147:0,147:0:0:147:5264:-473.892,-44.2514,0	1/1:119:0,119:0:0:119:4267:-384.146,-35.8226,0	1/1:209:0,209:0:0:209:7464:-671.735,-62.9153,0	0/1:234:115,119:115:4051:119:4264:-313.485,0,-294.328	0/1:183:98,85:98:3474:85:3018:-216.763,0,-257.782	0/1:239:97,142:97:3432:142:5083:-385.576,0,-237.04	0/1:272:138,134:138:4914:134:4797:-350.003,0,-360.505	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:220:0,220:0:0:220:7896:-710.617,-66.2266,0	1/1:74:1,73:1:36:73:2612:-231.638,-18.6779,0	1/1:11:0,11:0:0:11:388:-35.2564,-3.31133,0	1/1:174:0,174:0:0:174:6175:-555.783,-52.3792,0	1/1:78:0,78:0:0:78:2778:-250.254,-23.4803,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	1/1:144:0,144:0:0:144:5139:-462.64,-43.3483,0	1/1:290:1,289:1:36:289:10292:-922.557,-83.7004,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:207:0,207:0:0:207:7424:-668.166,-62.3132,0	0/1:257:128,128:128:4526:128:4572:-334.219,0,-329.993	1/1:106:0,106:0:0:106:3773:-339.74,-31.9092,0	1/1:125:0,125:0:0:125:4492:-404.356,-37.6288,0	1/1:232:1,231:1:36:231:8261:-739.807,-66.2407,0	0/1:229:140,89:140:4920:89:3196:-218.873,0,-374.017	1/1:97:0,97:0:0:97:3478:-313.228,-29.1999,0	1/1:154:0,154:0:0:154:5485:-492.631,-46.3586,0	1/1:218:0,217:0:0:217:7737:-695.826,-65.3235,0	1/1:47:0,47:0:0:47:1657:-149.415,-14.1484,0	0/1:126:66,60:66:2368:60:2140:-154.929,0,-175.448	0/1:90:40,50:40:1378:50:1796:-134.792,0,-97.2106	1/1:410:0,409:0:0:409:14653:-1317.21,-123.121,0	1/1:265:1,264:1:36:264:9488:-850.268,-76.1747,0	0/1:202:95,107:95:3360:107:3817:-282.915,0,-241.806	1/1:192:1,191:1:36:191:6828:-610.975,-54.1995,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:195:104,90:104:3678:90:3217:-230.952,0,-272.453	0/1:218:107,111:107:3771:111:3969:-291.774,0,-273.861	0/1:391:203,188:203:7150:188:6756:-490.403,0,-525.853	0/1:195:99,96:99:3450:96:3419:-249.219,0,-252.008	0/1:136:73,63:73:2595:63:2231:-160.108,0,-192.859	1/1:185:0,185:0:0:185:6621:-595.953,-55.6906,0	0/1:293:141,152:141:4962:152:5409:-398.691,0,-358.531	0/1:74:30,44:30:1057:44:1580:-120.199,0,-73.1627	1/1:131:0,131:0:0:131:4693:-422.5,-39.4349,0	1/1:143:1,142:1:36:142:5082:-453.903,-39.449,0	0/1:142:61,81:61:2148:81:2890:-217.589,0,-150.835	0/1:236:113,123:113:4005:123:4403:-325.388,0,-289.589	0/1:126:78,48:78:2779:48:1710:-116.256,0,-212.421	1/1:186:0,186:0:0:186:6634:-597.127,-55.9916,0	1/1:264:2,262:2:72:262:9396:-838.733,-72.6352,0
chr01	27987169	.	A	T	92805	PASS	AB=0.509925;ABP=9.77786;AC=39;AF=0.207447;AN=188;AO=4056;CIGAR=1X;DP=16531;DPB=16531;DPRA=1.42726;EPP=8801.82;EPPR=27016.2;GTI=4;LEN=1;MEANALT=1.08;MQM=59.8089;MQMR=59.8048;NS=94;NUMALT=1;ODDS=0.303838;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144921;QR=443274;RO=12464;RPL=1789;RPP=125.334;RPPR=507.69;RPR=2267;RUN=1;SAF=1788;SAP=126.36;SAR=2268;SRF=5375;SRP=514.832;SRR=7089;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:93:93,0:93:3303:0:0:0,-27.9958,-297.47	0/1:299:151,148:151:5340:148:5312:-388.141,0,-390.7	0/0:333:333,0:333:11878:0:0:0,-100.243,-1067.83	0/0:351:349,2:349:12453:2:72:0,-98.8248,-1113.75	0/1:152:74,78:74:2616:78:2774:-204.114,0,-189.926	0/1:124:62,62:62:2216:62:2205:-161.36,0,-162.377	0/1:250:123,127:123:4376:127:4545:-333.944,0,-318.738	0/0:247:247,0:247:8809:0:0:0,-74.3544,-792.572	0/0:203:203,0:203:7225:0:0:0,-61.1091,-649.344	0/0:211:211,0:211:7549:0:0:0,-63.5173,-678.658	0/0:199:199,0:199:7059:0:0:0,-59.905,-635.352	0/0:202:202,0:202:7168:0:0:0,-60.8081,-644.951	0/1:175:84,91:84:2980:91:3248:-239.848,0,-215.751	0/1:177:86,91:86:3070:91:3237:-238.224,0,-223.217	0/1:142:78,64:78:2774:64:2300:-164.508,0,-206.999	0/0:153:153,0:153:5455:0:0:0,-46.0576,-491.066	0/0:250:249,1:249:8878:1:36:0,-71.6592,-795.368	0/1:142:75,67:75:2660:67:2374:-171.16,0,-196.89	0/1:127:57,70:57:2029:70:2504:-187.379,0,-144.632	0/1:385:188,197:188:6652:197:7026:-516.389,0,-482.859	0/1:272:130,142:130:4622:142:5076:-374.922,0,-334.265	0/1:93:24,69:24:856:69:2480:-195.456,0,-49.3653	0/0:112:111,1:111:3965:1:36:0,-30.1171,-353.437	0/0:159:148,11:148:5267:11:392:0,-12.2437,-438.538	0/0:131:130,1:130:4623:1:36:0,-35.8367,-412.615	0/1:426:209,217:209:7448:217:7765:-570.64,0,-542.103	0/0:371:369,0:369:13100:0:0:0,-111.08,-1178.44	0/0:90:90,0:90:3204:0:0:0,-27.0927,-288.573	0/1:420:222,198:222:7876:198:7099:-512.469,0,-581.283	0/0:180:178,2:178:6368:2:72:0,-47.3487,-566.285	0/0:197:197,0:197:7025:0:0:0,-59.3029,-632.299	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4069	0/1:383:186,197:186:6613:197:7041:-518.438,0,-479.943	0/0:206:206,0:206:7309:0:0:0,-62.0122,-657.837	0/1:186:95,91:95:3359:91:3251:-236.818,0,-246.49	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/1:254:130,124:130:4584:124:4386:-318.413,0,-336.258	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:253:253,0:253:8997:0:0:0,-76.1606,-809.674	0/0:170:169,1:169:5997:1:36:0,-47.5794,-536.231	0/0:144:144,0:144:5106:0:0:0,-43.3483,-459.68	0/0:120:119,0:119:4249:0:0:0,-35.8226,-382.167	0/0:203:203,0:203:7165:0:0:0,-61.1091,-644.837	0/1:238:117,119:117:4167:119:4264:-312.514,0,-303.805	0/1:187:86,101:86:3041:101:3613:-269.081,0,-217.625	0/1:237:138,99:138:4940:99:3556:-248.853,0,-373.315	0/1:274:131,143:131:4684:143:5128:-379.167,0,-339.238	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:217:217,0:217:7717:0:0:0,-65.3235,-694.477	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.798	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9818	0/0:168:168,0:168:6000:0:0:0,-50.573,-540.09	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.554	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:17:10,7:10:360:7:248:-17.5467,0,-27.6268	0/0:143:143,0:143:5087:0:0:0,-43.0473,-457.968	0/0:281:279,1:279:9918:1:36:0,-81.0498,-888.868	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:200:200,0:200:7129:0:0:0,-60.206,-641.515	0/1:257:127,130:127:4511:130:4664:-342.46,0,-328.789	0/0:102:102,0:102:3616:0:0:0,-30.7051,-325.628	0/0:124:124,0:124:4388:0:0:0,-37.3277,-395.091	0/0:233:232,1:232:8254:1:36:0,-66.5417,-739.183	0/1:239:87,152:87:3088:152:5433:-417.136,0,-206.067	0/0:97:97,0:97:3440:0:0:0,-29.1999,-309.811	0/0:151:151,0:151:5375:0:0:0,-45.4555,-482.897	0/0:213:213,0:213:7555:0:0:0,-64.1194,-679.749	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.369	0/1:126:58,68:58:2048:68:2425:-180.566,0,-146.649	0/1:86:48,38:48:1692:38:1355:-96.3517,0,-126.674	0/0:413:413,0:413:14718:0:0:0,-124.325,-1323.64	0/0:261:260,1:260:9253:1:36:0,-74.9706,-829.137	0/1:204:106,98:106:3749:98:3462:-250.374,0,-276.195	0/0:189:188,1:188:6682:1:36:0,-53.2964,-597.845	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.328	0/1:202:91,108:91:3228:108:3855:-286.866,0,-230.316	0/1:217:111,106:111:3953:106:3778:-274.785,0,-290.55	0/1:393:186,207:186:6659:207:7397:-547.434,0,-481.075	0/1:204:97,107:97:3412:107:3807:-281.414,0,-245.884	0/1:139:61,78:61:2172:78:2787:-209.227,0,-153.899	0/0:177:177,0:177:6254:0:0:0,-53.2823,-562.954	0/1:288:146,142:146:5169:142:5072:-369.924,0,-378.607	0/1:76:43,33:43:1536:33:1184:-82.8841,0,-115.638	0/0:132:132,0:132:4715:0:0:0,-39.736,-424.468	0/0:141:141,0:141:5014:0:0:0,-42.4452,-451.381	0/1:142:78,64:78:2804:64:2292:-163.79,0,-209.853	0/1:240:120,119:120:4259:119:4254:-310.727,0,-311.175	0/1:127:48,79:48:1697:79:2828:-216.528,0,-114.783	0/0:187:187,0:187:6624:0:0:0,-56.2926,-596.192	0/0:260:259,0:259:9244:0:0:0,-77.9668,-831.542
chr01	28115582	.	T	C	102208	PASS	AB=0.5493;ABP=66.3866;AC=150;AF=0.797872;AN=188;AO=4918;CIGAR=1X;DP=6281;DPB=6281;DPRA=0;EPP=10682.3;EPPR=2951.87;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9858;MQMR=60;NS=94;NUMALT=1;ODDS=1.14049;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173563;QR=48593;RO=1358;RPL=4918;RPP=10682.3;RPPR=2951.87;RPR=0;RUN=1;SAF=4918;SAP=10682.3;SAR=0;SRF=1358;SRP=2951.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:98:32,66:32:1139:66:2327:-180.187,0,-73.3174	1/1:75:0,75:0:0:75:2647:-238.475,-22.5773,0	1/1:125:0,125:0:0:125:4439:-399.68,-37.6288,0	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:34:12,22:12:432:22:788:-61.0098,0,-28.9862	0/1:62:23,39:23:813:39:1371:-105.021,0,-54.8252	1/1:107:1,106:1:36:106:3737:-332.933,-28.6119,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:87:0,87:0:0:87:3103:-279.497,-26.1896,0	1/1:37:0,37:0:0:37:1292:-116.579,-11.1381,0	1/1:42:0,42:0:0:42:1456:-131.33,-12.6433,0	0/1:66:27,39:27:963:39:1352:-102.107,0,-67.118	0/1:56:31,25:31:1091:25:873:-62.0269,0,-81.6411	0/1:79:30,49:30:1080:49:1691:-128.688,0,-73.7319	1/1:47:0,47:0:0:47:1639:-147.794,-14.1484,0	1/1:79:0,79:0:0:79:2786:-250.982,-23.7814,0	0/1:60:22,38:22:788:38:1339:-102.747,0,-53.183	0/1:27:16,11:16:576:11:379:-26.3127,0,-44.0472	0/1:100:44,56:44:1571:56:1989:-149.179,0,-111.578	0/1:57:23,34:23:828:34:1216:-92.5832,0,-57.6854	0/1:69:49,20:49:1760:20:703:-42.8224,0,-137.913	1/1:68:0,68:0:0:68:2418:-217.876,-20.47,0	1/1:45:3,42:3:108:42:1495:-124.769,-3.47118,0	1/1:49:0,49:0:0:49:1732:-156.162,-14.7505,0	0/1:247:114,133:114:4092:133:4682:-347.183,0,-294.11	1/1:126:0,126:0:0:126:4477:-403.101,-37.9298,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:153:74,79:74:2656:79:2807:-206.813,0,-193.228	1/1:150:0,150:0:0:150:5268:-474.191,-45.1545,0	1/1:81:0,81:0:0:81:2876:-259.076,-24.3834,0	1/1:12:0,12:0:0:12:413:-37.4978,-3.61236,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:180:75,105:75:2696:105:3729:-281.628,0,-188.698	1/1:179:0,179:0:0:179:6239:-561.608,-53.8844,0	0/1:36:18,18:18:648:18:644:-47.4535,0,-47.8148	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:143:45,98:45:1608:98:3484:-270.723,0,-101.963	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	1/1:46:0,46:0:0:46:1595:-143.835,-13.8474,0	1/1:59:0,59:0:0:59:2069:-186.48,-17.7608,0	1/1:56:0,56:0:0:56:1959:-176.583,-16.8577,0	1/1:59:0,59:0:0:59:2093:-188.638,-17.7608,0	1/1:89:0,89:0:0:89:3134:-282.285,-26.7917,0	0/1:96:47,48:47:1684:48:1697:-124.096,0,-122.928	0/1:87:34,53:34:1212:53:1870:-142.386,0,-83.1967	0/1:98:32,66:32:1148:66:2336:-180.998,0,-74.1289	0/1:61:28,33:28:1000:33:1175:-87.6941,0,-71.9525	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:84:0,84:0:0:84:2959:-266.543,-25.2865,0	1/1:36:0,36:0:0:36:1283:-115.773,-10.8371,0	1/1:14:0,14:0:0:14:484:-43.8864,-4.21442,0	1/1:89:0,89:0:0:89:3157:-284.356,-26.7917,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:78:1,77:1:36:77:2677:-237.577,-19.8821,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:168:0,168:0:0:168:5975:-537.858,-50.573,0	0/1:132:41,90:41:1464:90:3189:-247.439,0,-92.2614	1/1:52:0,52:0:0:52:1777:-160.206,-15.6536,0	1/1:47:0,47:0:0:47:1666:-150.226,-14.1484,0	1/1:128:1,127:1:36:127:4487:-400.403,-34.9336,0	0/1:98:60,38:60:2148:38:1352:-92.4794,0,-164.087	1/1:13:1,12:1:36:12:419:-34.4444,-0.315115,0	1/1:44:0,42:0:0:42:1489:-133.943,-12.6433,0	1/1:115:0,115:0:0:115:4035:-363.34,-34.6185,0	1/1:26:0,26:0:0:26:913:-82.484,-7.82678,0	0/1:54:27,27:27:964:27:919:-66.761,0,-70.8212	0/1:52:20,32:20:716:32:1140:-87.2556,0,-49.1142	1/1:77:0,76:0:0:76:2703:-243.154,-22.8783,0	1/1:105:0,105:0:0:105:3727:-335.631,-31.6082,0	0/1:59:26,33:26:936:33:1184:-89.1075,0,-66.7987	1/1:88:0,88:0:0:88:3125:-281.476,-26.4906,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:93:38,55:38:1364:55:1963:-148.949,0,-95.0649	0/1:66:32,34:32:1148:34:1220:-90.2388,0,-83.7619	0/1:126:56,70:56:2003:70:2400:-178.321,0,-142.613	0/1:107:57,50:57:2032:50:1750:-125.57,0,-150.942	0/1:48:22,26:22:788:26:924:-69.0282,0,-56.7954	1/1:66:0,66:0:0:66:2327:-209.688,-19.868,0	0/1:147:69,78:69:2458:78:2772:-205.471,0,-177.222	0/1:34:20,14:20:716:14:477:-33.0181,0,-54.5327	1/1:60:0,60:0:0:60:2113:-190.422,-18.0618,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:29:16,13:16:568:13:463:-33.2772,0,-42.722	0/1:56:24,32:24:847:32:1119:-84.1591,0,-59.691	0/1:58:47,11:47:1684:11:377:-16.7982,0,-134.387	1/1:56:0,56:0:0:56:1982:-178.653,-16.8577,0	1/1:77:0,77:0:0:77:2686:-241.986,-23.1793,0
chr01	28374869	.	G	T	133163	PASS	AB=0.481443;ABP=14.5349;AC=149;AF=0.792553;AN=188;AO=6277;CIGAR=1X;DP=8279;DPB=8279;DPRA=0;EPP=13598.6;EPPR=4328.6;GTI=3;LEN=1;MEANALT=1.02128;MQM=59.9683;MQMR=59.961;NS=94;NUMALT=1;ODDS=0.845304;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224150;QR=69983;RO=2000;RPL=4;RPP=13598.6;RPPR=4328.6;RPR=6273;RUN=1;SAF=0;SAP=13633.3;SAR=6277;SRF=0;SRP=4345.96;SRR=2000;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/1:30:12,18:12:420:18:640:-48.8984,0,-29.1031	1/1:92:0,92:0:0:92:3273:-294.682,-27.6948,0	1/1:157:0,157:0:0:157:5601:-504.214,-47.2617,0	0/1:78:41,37:41:1460:37:1332:-96.702,0,-108.216	0/1:57:32,25:32:1098:25:888:-63.0803,0,-81.963	0/1:115:65,49:65:2268:49:1752:-123.286,0,-169.705	1/1:122:0,122:0:0:122:4378:-394.16,-36.7257,0	1/1:89:0,89:0:0:89:3173:-285.794,-26.7917,0	1/1:39:0,39:0:0:39:1396:-125.937,-11.7402,0	1/1:110:0,110:0:0:110:3935:-354.343,-33.1133,0	1/1:135:1,133:1:36:133:4751:-424.15,-37.0996,0	0/1:89:36,53:36:1252:53:1885:-143.135,0,-86.1876	0/1:120:60,60:60:2090:60:2119:-154.855,0,-152.244	0/1:80:37,43:37:1305:43:1531:-114,0,-93.6623	1/1:95:0,95:0:0:95:3400:-306.215,-28.5979,0	1/1:56:0,56:0:0:56:1971:-177.665,-16.8577,0	0/1:30:11,19:11:372:19:676:-52.1371,0,-24.7729	0/1:44:22,22:22:784:22:784:-57.6386,0,-57.6386	0/1:165:84,81:84:2965:81:2884:-210.125,0,-217.414	0/1:122:51,71:51:1807:71:2544:-192.485,0,-126.185	0/1:108:85,23:85:3022:23:816:-41.2505,0,-239.699	1/1:110:0,110:0:0:110:3936:-354.432,-33.1133,0	0/1:56:6,50:6:216:50:1791:-144.615,0,-2.93283	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	0/1:189:112,77:112:3948:77:2744:-190.309,0,-298.62	1/1:228:0,228:0:0:228:8152:-733.637,-68.6348,0	1/1:54:0,54:0:0:54:1902:-171.454,-16.2556,0	0/1:155:93,62:93:3254:62:2232:-154.484,0,-246.42	1/1:88:0,88:0:0:88:3130:-281.926,-26.4906,0	1/1:109:0,109:0:0:109:3903:-351.464,-32.8123,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:15:1,14:1:36:14:500:-41.7379,-0.917175,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:221:114,107:114:3943:107:3826:-278.008,0,-288.539	1/1:105:0,105:0:0:105:3768:-339.318,-31.6082,0	0/1:83:35,48:35:1210:48:1699:-128.21,0,-84.1956	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:95:53,42:53:1842:42:1495:-106.246,0,-137.455	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:164:0,164:0:0:164:5844:-526.073,-49.3689,0	1/1:63:0,63:0:0:63:2245:-202.299,-18.9649,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:112:0,112:0:0:112:3982:-358.568,-33.7154,0	0/1:140:70,70:70:2474:70:2512:-184.178,0,-180.77	0/1:100:60,40:60:2123:40:1432:-99.0746,0,-161.235	0/1:108:55,53:55:1949:53:1908:-139.486,0,-143.173	0/1:132:61,71:61:2134:71:2548:-189.834,0,-152.589	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:86:0,86:0:0:86:3068:-276.348,-25.8886,0	1/1:64:0,64:0:0:64:2256:-203.301,-19.2659,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:104:0,104:0:0:104:3723:-335.271,-31.3071,0	1/1:56:0,56:0:0:56:2002:-180.452,-16.8577,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:94:0,94:0:0:94:3366:-303.155,-28.2968,0	1/1:142:0,142:0:0:142:5056:-455.186,-42.7463,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:117:0,117:0:0:117:4192:-377.461,-35.2205,0	0/1:117:60,57:60:2108:57:2044:-149.011,0,-154.681	1/1:70:0,70:0:0:70:2512:-226.324,-21.0721,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:95:67,28:67:2346:28:995:-61.2662,0,-182.795	1/1:99:0,99:0:0:99:3480:-313.407,-29.802,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:77:0,77:0:0:77:2730:-245.942,-23.1793,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:110:63,47:63:2204:47:1678:-118.194,0,-165.511	0/1:61:21,40:21:728:40:1413:-109.102,0,-47.4749	1/1:164:0,164:0:0:164:5860:-527.511,-49.3689,0	1/1:174:0,174:0:0:174:6232:-560.969,-52.3792,0	0/1:84:39,45:39:1383:45:1605:-119.452,0,-99.4815	1/1:143:1,142:1:36:142:5045:-450.597,-39.449,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:123:69,54:69:2405:54:1935:-137.399,0,-179.678	0/1:88:42,46:42:1460:46:1641:-121.486,0,-105.201	0/1:149:80,69:80:2824:69:2472:-177.88,0,-209.545	0/1:47:21,26:21:714:26:936:-70.4111,0,-50.4247	0/1:85:33,52:33:1140:52:1860:-142.092,0,-77.3148	1/1:40:0,40:0:0:40:1432:-129.153,-12.0412,0	0/1:139:76,63:76:2661:63:2255:-161.369,0,-197.891	0/1:20:13,7:13:444:7:243:-16.1869,0,-34.2635	1/1:88:0,88:0:0:88:3143:-283.095,-26.4906,0	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	0/1:108:49,59:49:1710:59:2107:-157.388,0,-121.67	0/1:184:82,102:82:2796:102:3644:-272.776,0,-196.487	0/1:115:81,34:81:2804:34:1220:-75.4884,0,-217.977	1/1:138:0,138:0:0:138:4909:-441.961,-41.5421,0	1/1:128:0,128:0:0:128:4575:-411.915,-38.5318,0
chr01	28374885	.	C	T	35921.6	PASS	AB=0.528116;ABP=30.1174;AC=39;AF=0.207447;AN=188;AO=2087;CIGAR=1X;DP=8402;DPB=8402;DPRA=1.2361;EPP=4517.52;EPPR=13672.5;GTI=4;LEN=1;MEANALT=1;MQM=59.9233;MQMR=59.9698;NS=94;NUMALT=1;ODDS=0.376871;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74706;QR=225546;RO=6315;RPL=2085;RPP=4517.52;RPPR=13672.5;RPR=2;RUN=1;SAF=0;SAP=4534.87;SAR=2087;SRF=0;SRP=13715.9;SRR=6315;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:46,0:46:1630:0:0:0,-13.8474,-146.987	0/1:33:20,13:20:720:13:464:-32.1635,0,-55.1948	0/0:96:96,0:96:3409:0:0:0,-28.8989,-306.465	0/0:155:155,0:155:5534:0:0:0,-46.6596,-498.185	0/1:82:39,43:39:1379:43:1544:-114.569,0,-99.7235	0/1:56:24,32:24:852:32:1148:-86.7722,0,-60.1427	0/1:115:48,67:48:1711:67:2363:-178.311,0,-119.657	0/0:124:124,0:124:4436:0:0:0,-37.3277,-399.408	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.364	0/0:110:110,0:110:3931:0:0:0,-33.1133,-353.982	0/0:138:138,0:138:4935:0:0:0,-41.5421,-444.299	0/1:92:51,41:51:1810:41:1472:-105.081,0,-135.485	0/1:125:60,65:60:2144:65:2323:-171.701,0,-155.599	0/1:83:43,40:43:1548:40:1432:-104.159,0,-114.628	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:30:19,11:19:684:11:396:-26.9518,0,-52.8594	0/1:44:22,22:22:788:22:788:-57.9971,0,-57.9995	0/1:171:85,86:85:3047:86:3076:-225.593,0,-222.982	0/1:124:70,54:70:2486:54:1925:-136.198,0,-186.665	0/1:112:24,88:24:856:88:3157:-250.638,0,-43.6457	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.623	0/1:59:53,6:53:1904:6:216:-2.02974,0,-153.869	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/1:193:77,116:77:2744:116:4164:-316.843,0,-189.104	0/0:225:225,0:225:8037:0:0:0,-67.7317,-723.294	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/1:156:63,93:63:2240:93:3340:-253.856,0,-154.903	0/0:91:91,0:91:3239:0:0:0,-27.3937,-291.732	0/0:106:106,0:106:3778:0:0:0,-31.9092,-340.219	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:16:15,1:15:540:1:36:0,-1.2182,-45.3383	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:220:105,115:105:3754:115:4127:-304.365,0,-271.832	0/0:103:103,0:103:3663:0:0:0,-31.0061,-329.875	0/1:82:47,35:47:1684:35:1256:-88.6432,0,-127.163	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:100:45,55:45:1607:55:1972:-147.623,0,-114.816	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:161:161,0:161:5740:0:0:0,-48.4658,-516.716	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.163	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.127	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/0:118:118,0:118:4222:0:0:0,-35.5215,-380.14	0/1:144:72,72:72:2588:72:2568:-188.022,0,-189.803	0/1:100:41,59:41:1456:59:2112:-160.246,0,-101.233	0/1:107:51,56:51:1820:56:2000:-148.063,0,-131.871	0/1:136:71,65:71:2527:65:2332:-169.199,0,-186.741	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:87:87,0:87:3101:0:0:0,-26.1896,-279.316	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:103:103,0:103:3663:0:0:0,-31.0061,-329.875	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:93:93,0:93:3331:0:0:0,-27.9958,-300.002	0/0:144:144,0:144:5163:0:0:0,-43.3483,-464.809	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:121:121,0:121:4331:0:0:0,-36.4246,-389.965	0/1:119:56,63:56:2008:63:2264:-168.163,0,-145.171	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.16	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.757	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.115	0/1:99:28,71:28:1004:71:2533:-198.414,0,-60.8739	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.807	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.999	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/1:114:49,65:49:1752:65:2336:-176.182,0,-123.647	0/1:63:38,25:38:1360:25:881:-60.6289,0,-103.736	0/0:165:165,0:165:5902:0:0:0,-49.6699,-531.289	0/0:178:178,0:178:6355:0:0:0,-53.5833,-572.039	0/1:89:45,44:45:1616:44:1561:-113.976,0,-118.938	0/0:143:142,1:142:5065:1:36:0,-39.449,-452.388	0/0:17:17,0:17:591:0:0:0,-5.11751,-53.5153	0/1:124:53,71:53:1880:71:2544:-191.883,0,-132.151	0/1:96:47,49:47:1688:49:1752:-129.065,0,-123.308	0/1:152:70,82:70:2495:82:2929:-218.087,0,-179.046	0/1:49:27,22:27:959:22:788:-56.4943,0,-71.8749	0/1:91:52,39:52:1863:39:1392:-98.1853,0,-140.555	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.566	0/1:139:62,77:62:2208:77:2768:-207.518,0,-157.142	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:92:92,0:92:3267:0:0:0,-27.6948,-294.252	0/1:110:58,52:58:2084:52:1864:-134.926,0,-154.717	0/1:188:101,87:101:3611:87:3111:-223.621,0,-268.602	0/1:118:34,84:34:1216:84:3016:-236.149,0,-74.225	0/0:141:141,0:141:5039:0:0:0,-42.4452,-453.656	0/0:130:130,0:130:4641:0:0:0,-39.1339,-417.852
chr01	28381909	.	G	A	38092.1	PASS	AB=0.702133;ABP=2848.13;AC=102;AF=0.542553;AN=188;AO=6353;CIGAR=1X;DP=8786;DPB=8786;DPRA=0;EPP=13798.4;EPPR=5227.61;GTI=21;LEN=1;MEANALT=1.11702;MQM=22.1144;MQMR=59.7572;NS=94;NUMALT=1;ODDS=0.0220906;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227208;QR=86405;RO=2418;RPL=6353;RPP=13798.4;RPPR=5253.63;RPR=0;RUN=1;SAF=0;SAP=13798.4;SAR=6353;SRF=3;SRP=5227.61;SRR=2415;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:13,32:13:464:32:1136:-67.1031,0,-28.5512	0/1:92:37,55:37:1324:55:1972:-85.4864,0,-91.749	0/1:155:46,109:46:1640:109:3908:-224.136,0,-101.229	0/1:100:22,78:22:779:78:2800:-100.78,0,-40.3244	0/1:57:14,43:14:504:43:1540:-62.199,0,-28.5394	0/1:56:24,32:24:860:32:1140:-49.3532,0,-60.8642	0/1:56:35,21:35:1260:21:756:-18.0677,0,-96.8203	0/1:163:48,115:48:1724:115:4124:-237.613,0,-106.364	0/1:126:16,110:16:576:110:3921:-235.319,0,-14.2406	0/1:101:28,73:28:996:73:2608:-91.0455,0,-59.5509	0/1:67:27,40:27:959:40:1432:-44.5503,0,-66.4564	0/1:110:13,97:13:468:97:3475:-207.391,0,-9.34634	0/1:89:22,67:22:784:67:2408:-112.216,0,-42.8122	0/1:86:33,53:33:1172:53:1888:-63.6683,0,-79.8852	0/1:60:25,33:25:896:33:1184:-39.9107,0,-63.308	0/1:66:9,57:9:315:57:2048:-104.19,0,-8.81925	0/1:78:42,36:42:1504:36:1296:-65.796,0,-112.174	0/1:48:7,41:7:248:41:1472:-73.4836,0,-8.21475	0/1:31:5,26:5:180:26:936:-49.5369,0,-7.22013	0/1:111:37,74:37:1316:74:2629:-91.1737,0,-85.3137	1/1:193:15,178:15:536:178:6380:-256.306,-9.53778,0	0/1:90:63,27:63:2256:27:968:-11.2667,0,-176.154	1/1:135:5,130:5:180:130:4664:-204.797,-24.087,0	0/1:66:24,42:24:860:42:1508:-69.4919,0,-57.8539	0/1:121:27,94:27:960:94:3360:-161.499,0,-50.2916	0/1:216:102,114:102:3660:114:4062:-90.9432,0,-264.576	0/1:199:31,168:31:1116:168:6024:-295.262,0,-40.8467	0/1:39:4,35:4:144:35:1248:-62.5161,0,-1.57345	0/1:244:90,154:90:3204:154:5469:-140.851,0,-214.588	0/1:126:19,107:19:684:107:3832:-190.997,0,-23.9605	0/1:93:37,56:37:1316:56:2000:-72.2335,0,-90.746	0/1:51:5,46:5:180:46:1648:-83.1403,0,-1.18553	0/1:37:12,25:12:428:25:892:-41.8875,0,-27.7207	0/1:18:12,6:12:428:6:216:-7.03753,0,-33.4403	1/1:94:6,88:6:216:88:3148:-197.467,-8.50631,0	0/1:24:9,15:9:320:15:536:-29.3809,0,-21.9176	0/1:167:76,91:76:2712:91:3240:-74.2135,0,-193.923	0/1:168:46,122:46:1637:122:4341:-217.681,0,-97.0299	0/1:52:10,42:10:360:42:1496:-77.3688,0,-17.0907	0/1:8:1,7:1:36:7:252:-13.7982,0,-1.19003	0/1:128:53,75:53:1888:75:2692:-89.0774,0,-131.667	0/1:40:11,28:11:392:28:1004:-50.572,0,-23.6413	0/1:182:19,163:19:680:163:5844:-294.039,0,-5.19665	0/1:52:8,43:8:288:43:1540:-56.0677,0,-10.7155	0/1:71:15,56:15:540:56:2004:-77.2658,0,-27.5634	0/1:103:14,89:14:500:89:3180:-86.771,0,-14.3301	0/1:183:29,154:29:1040:154:5516:-331.355,0,-38.8259	0/1:104:45,59:45:1608:59:2101:-74.0761,0,-113.518	0/1:75:24,51:24:864:51:1824:-62.933,0,-55.5053	0/1:67:13,54:13:460:54:1924:-74.4649,0,-21.5664	0/1:95:31,64:31:1108:64:2292:-61.5304,0,-71.4285	1/1:58:0,58:0:0:58:2072:-94.1904,-17.4597,0	0/1:92:18,73:18:648:73:2624:-153.383,0,-30.98	0/1:43:14,29:14:504:29:1040:-21.9539,0,-32.7538	0/1:23:12,11:12:428:11:396:-20.4383,0,-31.9213	0/1:154:43,111:43:1540:111:3984:-190.815,0,-92.5345	1/1:31:0,31:0:0:31:1108:-53.1115,-9.33193,0	1/1:47:2,45:2:72:45:1616:-55.6174,-7.31169,0	0/1:12:5,7:5:180:7:252:-5.14732,0,-12.9397	0/1:74:22,52:22:780:52:1856:-89.1513,0,-48.2468	0/1:163:74,87:74:2656:87:3108:-95.5479,0,-190.636	1/1:39:2,37:2:72:37:1332:-57.3839,-4.90345,0	1/1:172:15,157:15:540:157:5570:-155.355,-2.84062,0	0/1:141:74,67:74:2644:67:2400:-66.951,0,-195.752	0/1:68:19,49:19:680:49:1722:-85.6268,0,-41.0591	0/1:103:22,81:22:788:81:2864:-107.889,0,-40.2249	0/1:175:21,154:21:752:154:5484:-214.822,0,-15.326	0/1:90:40,50:40:1436:50:1773:-66.5943,0,-102.445	0/1:43:7,36:7:252:36:1296:-66.9306,0,-10.0847	0/1:32:15,17:15:540:17:604:-32.8042,0,-39.3036	0/1:75:49,26:49:1747:26:932:-16.1912,0,-134.936	0/1:32:13,18:13:460:18:625:-21.1551,0,-32.2117	0/1:141:76,65:76:2708:65:2316:-90.7643,0,-201.519	0/1:94:18,76:18:636:76:2728:-121.802,0,-29.2712	0/1:173:50,123:50:1772:123:4369:-212.876,0,-107.675	0/1:200:59,141:59:2104:141:5068:-177.025,0,-129.424	0/1:128:23,105:23:828:105:3768:-177.366,0,-35.5004	0/1:82:14,68:14:500:68:2432:-144.674,0,-20.6517	0/1:50:16,34:16:576:34:1220:-70.3597,0,-37.1235	0/1:116:39,77:39:1392:77:2764:-100.008,0,-90.6549	0/1:157:15,142:15:540:142:5092:-241.823,0,-1.67483	0/1:184:88,96:88:3137:96:3440:-108.888,0,-225.816	0/1:80:54,26:54:1923:26:936:-21.05,0,-149.264	0/1:42:12,30:12:432:30:1076:-40.4173,0,-26.5779	0/1:70:22,48:22:784:48:1724:-57.0059,0,-49.8118	0/1:66:13,52:13:460:52:1864:-70.4402,0,-21.9766	0/1:31:8,23:8:284:23:824:-34.6215,0,-16.5714	0/1:81:16,63:16:572:63:2260:-131.292,0,-25.8091	0/1:78:13,64:13:468:64:2283:-136.765,0,-19.0006	0/1:29:9,20:9:320:20:716:-22.6996,0,-20.4125	0/1:129:18,110:18:640:110:3948:-158.077,0,-19.2558	0/1:22:2,20:2:72:20:712:-31.1731,0,-0.214062	0/1:113:13,100:13:464:100:3584:-136.195,0,-8.08112	0/1:115:14,99:14:504:99:3548:-134.125,0,-11.4798
chr01	28564990	.	TTTTGGG	TTTCGGG	91754.1	PASS	AB=0.704969;ABP=238.015;AC=175;AF=0.930851;AN=188;AO=3534;CIGAR=3M1X3M;DP=3814;DPB=3814.29;DPRA=0;EPP=1833.51;EPPR=134.807;GTI=2;LEN=1;MEANALT=1.62766;MQM=54.7609;MQMR=59.1823;NS=94;NUMALT=1;ODDS=3.09226;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121957;QR=6863;RO=203;RPL=3534;RPP=7676.99;RPPR=443.819;RPR=0;RUN=1;SAF=904;SAP=1833.51;SAR=2630;SRF=46;SRP=134.807;SRR=157;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:428:-38.7974,-3.61236,0	1/1:66:0,66:0:0:66:2303:-205.941,-19.868,0	1/1:30:0,28:0:0:28:964:-85.611,-8.42884,0	1/1:43:0,42:0:0:42:1457:-130.189,-12.6433,0	1/1:33:0,33:0:0:33:1143:-102.489,-9.93399,0	1/1:29:0,29:0:0:29:1002:-90.0781,-8.72987,0	1/1:38:0,38:0:0:38:1327:-118.693,-11.4391,0	1/1:42:0,42:0:0:42:1467:-131.672,-12.6433,0	1/1:27:0,24:0:0:24:839:-75.2744,-7.22472,0	1/1:17:0,17:0:0:17:586:-52.7726,-5.11751,0	1/1:51:0,50:0:0:50:1646:-145.824,-15.0515,0	1/1:32:0,32:0:0:32:1108:-99.4751,-9.63296,0	1/1:63:0,63:0:0:63:2105:-188.322,-18.9649,0	1/1:43:0,43:0:0:43:1481:-133.087,-12.9443,0	1/1:44:0,43:0:0:43:1438:-127.923,-12.9443,0	1/1:29:0,29:0:0:29:981:-88.1289,-8.72987,0	1/1:34:0,34:0:0:34:1168:-103.958,-10.235,0	1/1:63:0,61:0:0:61:2057:-182.919,-18.3628,0	1/1:36:0,34:0:0:34:1148:-102.033,-10.235,0	1/1:53:0,50:0:0:50:1751:-156.812,-15.0515,0	1/1:42:0,42:0:0:42:1470:-131.646,-12.6433,0	1/1:45:0,44:0:0:44:1544:-138.328,-13.2453,0	1/1:13:0,13:0:0:13:449:-39.8478,-3.91339,0	0/1:41:10,28:10:355:28:976:-75.6091,0,-20.5142	1/1:17:0,16:0:0:16:567:-50.9248,-4.81648,0	0/1:85:16,68:16:552:68:2395:-189.177,0,-24.4579	1/1:46:0,45:0:0:45:1574:-141.401,-13.5464,0	0/1:19:3,15:3:92:15:509:-39.8482,0,-2.87579	1/1:63:0,63:0:0:63:2231:-199.879,-18.9649,0	1/1:25:0,23:0:0:23:805:-72.2621,-6.92369,0	0/1:51:16,35:16:553:35:1209:-92.7348,0,-34.7436	1/1:28:1,27:1:35:27:952:-81.5371,-4.93021,0	1/1:55:0,55:0:0:55:1955:-175.864,-16.5567,0	1/1:88:3,84:3:98:84:2882:-247.94,-17.387,0	1/1:75:0,73:0:0:73:2507:-223.148,-21.9752,0	1/1:58:4,53:4:139:53:1822:-149.796,-4.59889,0	1/1:50:0,48:0:0:48:1684:-150.547,-14.4494,0	1/1:29:0,29:0:0:29:1031:-92.8284,-8.72987,0	1/1:55:0,52:0:0:52:1799:-160.67,-15.6536,0	1/1:28:0,27:0:0:27:937:-84.0994,-8.12781,0	1/1:60:4,56:4:138:56:1931:-159.651,-5.30565,0	0/1:18:2,14:2:70:14:477:-37.4887,0,-1.52219	1/1:49:0,49:0:0:49:1730:-155.382,-14.7505,0	1/1:33:0,32:0:0:32:990:-86.2572,-9.63296,0	1/1:35:0,34:0:0:34:1109:-97.2203,-10.235,0	1/1:25:0,25:0:0:25:896:-80.6322,-7.52575,0	1/1:46:0,46:0:0:46:1569:-139.283,-13.8474,0	0/1:62:16,46:16:550:46:1594:-124.664,0,-31.1609	1/1:28:0,26:0:0:26:932:-83.7483,-7.82678,0	1/1:67:0,67:0:0:67:2319:-207.272,-20.169,0	1/1:36:0,35:0:0:35:1227:-109.65,-10.5361,0	1/1:34:0,34:0:0:34:1166:-104.137,-10.235,0	0/1:90:37,52:37:1254:52:1805:-134.246,0,-86.0047	1/1:14:0,14:0:0:14:472:-42.7174,-4.21442,0	1/1:24:1,23:1:36:23:796:-68.1647,-3.62645,0	0/1:49:8,41:8:273:41:1439:-114.178,0,-10.1513	1/1:8:0,8:0:0:8:288:-26.222,-2.40824,0	1/1:14:1,13:1:31:13:464:-38.9518,-1.11497,0	1/1:33:0,33:0:0:33:1158:-104.22,-9.93399,0	1/1:32:0,31:0:0:31:1063:-95.4944,-9.33193,0	1/1:65:0,63:0:0:63:2082:-182.859,-18.9649,0	1/1:13:0,13:0:0:13:464:-41.8237,-3.91339,0	1/1:38:0,37:0:0:37:1308:-117.104,-11.1381,0	1/1:44:0,42:0:0:42:1446:-129.475,-12.6433,0	1/1:29:1,28:1:33:28:967:-82.9123,-5.43074,0	1/1:32:0,30:0:0:30:1076:-96.7313,-9.0309,0	1/1:34:0,34:0:0:34:1177:-105.678,-10.235,0	1/1:25:0,25:0:0:25:879:-79.044,-7.52575,0	1/1:32:0,32:0:0:32:1061:-94.8516,-9.63296,0	1/1:30:0,30:0:0:30:1063:-95.7829,-9.0309,0	1/1:54:0,48:0:0:48:1656:-147.261,-14.4494,0	1/1:25:1,23:1:34:23:767:-65.2731,-4.17548,0	1/1:29:0,29:0:0:29:1018:-91.5983,-8.72987,0	1/1:25:2,23:2:71:23:801:-65.3311,-0.783691,0	1/1:43:0,42:0:0:42:1467:-131.179,-12.6433,0	1/1:69:0,66:0:0:66:2291:-204.951,-19.868,0	0/1:41:13,28:13:443:28:973:-74.607,0,-27.8525	1/1:18:0,18:0:0:18:623:-56.3541,-5.41854,0	1/1:34:0,34:0:0:34:1146:-102.073,-10.235,0	1/1:54:0,54:0:0:54:1867:-167.673,-16.2556,0	1/1:49:4,44:4:140:44:1518:-123.337,-1.77668,0	1/1:119:0,117:0:0:117:4098:-367.555,-35.2205,0	1/1:31:0,28:0:0:28:948:-84.5069,-8.42884,0	1/1:22:0,22:0:0:22:761:-68.3619,-6.62266,0	1/1:25:0,25:0:0:25:808:-71.0263,-7.52575,0	1/1:46:0,43:0:0:43:1427:-126.726,-12.9443,0	1/1:14:0,14:0:0:14:469:-42.1067,-4.21442,0	0/1:34:9,25:9:298:25:856:-66.0873,0,-16.907	0/1:38:12,25:12:390:25:852:-65.1581,0,-23.2665	1/1:34:0,30:0:0:30:1009:-90.0195,-9.0309,0	0/1:86:33,53:33:1087:53:1827:-138.239,0,-72.2363	0/1:30:6,24:6:191:24:844:-66.7559,0,-8.47257	1/1:28:0,28:0:0:28:977:-87.7878,-8.42884,0	1/1:69:0,68:0:0:68:2309:-206.591,-20.47,0
chr01	28574627	.	GCTTT	GCCGT,GCTGT	99289	PASS	AB=0.53175,0.461855;ABP=22.1766,30.676;AC=147,39;AF=0.790323,0.209677;AN=186;AO=3651,1024;CIGAR=2M2X1M,3M1X1M;DP=4701;DPB=4699.4;DPRA=51.087,1.48961;EPP=7931.06,2226.6;EPPR=0;GTI=3;LEN=2,1;MEANALT=1.75,2.34043;MQM=56.4015,59.9277;MQMR=0;NS=93;NUMALT=2;ODDS=0.158925;PAIRED=0,0;PAIREDR=0;PAO=0.25,0.25;PQA=0,0;PQR=0;PRO=0.25;QA=129016,36484;QR=0;RO=0;RPL=0,0;RPP=7931.06,2226.6;RPPR=0;RPR=3651,1024;RUN=1,1;SAF=3651,1024;SAP=7931.06,2226.6;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27,0:0:0:27,0:939,0:-84.2386,-8.12781,0,-84.2386,-8.12781,-84.2386	1/2:28:0,14,13:0:0:14,13:500,453:-77.3459,-36.8272,-32.6128,-40.5113,0,-36.5979	1/1:102:0,101,0:0:0:101,0:3589,0:-322.579,-30.404,0,-322.579,-30.404,-322.579	1/1:69:0,69,0:0:0:69,0:2434,0:-219.079,-20.7711,0,-219.079,-20.7711,-219.079	1/2:10:0,9,1:0:0:9,1:324,36:-29.7228,-3.29724,-0.587975,-26.7854,0,-26.4844	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:16:0,8,8:0:0:8,8:286,288:-47.1552,-23.8592,-21.4509,-23.6545,0,-21.2462	1/1:73:0,73,0:0:0:73,0:2534,0:-227.567,-21.9752,0,-227.567,-21.9752,-227.567	1/1:35:0,35,0:0:0:35,0:1254,0:-113.049,-10.5361,0,-113.049,-10.5361,-113.049	1/1:75:0,75,0:0:0:75,0:2654,0:-238.825,-22.5773,0,-238.825,-22.5773,-238.825	1/1:17:0,17,0:0:0:17,0:601,0:-54.3732,-5.11751,0,-54.3732,-5.11751,-54.3732	1/1:56:0,56,0:0:0:56,0:1972,0:-177.001,-16.8577,0,-177.001,-16.8577,-177.001	1/2:51:0,32,19:0:0:32,19:1130,668:-146.131,-54.7255,-45.0926,-91.757,0,-86.0375	1/2:51:0,36,15:0:0:36,15:1266,540:-147.444,-44.4211,-33.584,-103.38,0,-98.8644	1/2:40:0,13,27:0:0:13,27:457,957:-115.486,-78.3161,-74.4027,-37.5222,0,-29.3944	1/1:35:0,35,0:0:0:35,0:1237,0:-111.391,-10.5361,0,-111.391,-10.5361,-111.391	1/1:27:0,27,0:0:0:27,0:955,0:-86.1794,-8.12781,0,-86.1794,-8.12781,-86.1794	1/2:25:0,8,17:0:0:8,17:286,612:-73.5895,-50.2959,-47.8877,-23.6514,0,-18.5339	1/2:11:0,2,9:0:0:2,9:72,309:-31.3016,-25.4305,-24.8285,-6.22762,0,-3.51835	1/2:68:0,48,20:0:0:48,20:1676,716:-194.874,-58.7425,-44.2931,-136.487,0,-130.466	1/2:127:0,68,59:0:0:68,59:2408,2093:-366.892,-170.877,-150.407,-196.369,0,-178.608	1/2:37:0,20,17:0:0:20,17:707,612:-107.799,-50.2959,-44.2753,-57.8597,0,-52.7422	1/1:55:0,52,2:0:0:52,2:1834,72:-164.656,-15.6536,0,-158.781,-9.69128,-158.179	1/1:44:0,42,2:0:0:42,2:1466,72:-131.415,-12.6433,0,-125.54,-6.4086,-124.938	1/1:47:0,47,0:0:0:47,0:1684,0:-151.452,-14.1484,0,-151.452,-14.1484,-151.452	1/2:121:0,53,68:0:0:53,68:1877,2418:-349.838,-197.385,-181.431,-152.807,0,-132.337	1/1:120:0,120,0:0:0:120,0:4210,0:-378.604,-36.1236,0,-378.604,-36.1236,-378.604	1/1:27:0,26,0:0:0:26,0:913,0:-82.1124,-7.82678,0,-82.1124,-7.82678,-82.1124	1/2:125:0,84,41:0:0:84,41:2975,1464:-361.745,-119.714,-94.4273,-242.387,0,-230.045	1/1:56:0,56,0:0:0:56,0:1988,0:-179.022,-16.8577,0,-179.022,-16.8577,-179.022	1/1:37:0,36,0:0:0:36,0:1266,0:-113.594,-10.8371,0,-113.594,-10.8371,-113.594	1/1:11:0,11,0:0:0:11,0:385,0:-34.9793,-3.31133,0,-34.9793,-3.31133,-34.9793	1/1:6:0,6,0:0:0:6,0:216,0:-19.7802,-1.80618,0,-19.7802,-1.80618,-19.7802	1/1:5:0,5,0:0:0:5,0:169,0:-15.3181,-1.50515,0,-15.3181,-1.50515,-15.3181	1/1:5:0,5,0:0:0:5,0:180,0:-16.535,-1.50515,0,-16.535,-1.50515,-16.535	1/1:8:0,8,0:0:0:8,0:277,0:-25.2412,-2.40824,0,-25.2412,-2.40824,-25.2412	1/2:114:0,62,52:0:0:62,52:2177,1868:-329.733,-152.746,-134.082,-177.342,0,-161.689	1/1:73:0,72,1:0:0:72,1:2557,36:-229.878,-21.6742,0,-226.94,-18.3769,-226.639	1/2:38:0,17,21:0:0:17,21:601,752:-110.575,-61.6837,-56.5662,-49.2469,0,-42.9253	.:.:.:.:.:.:.:.	1/2:74:0,33,40:0:0:33,40:1180,1436:-213.219,-117.283,-107.349,-96.0782,0,-84.037	1/1:12:0,12,0:0:0:12,0:432,0:-39.1325,-3.61236,0,-39.1325,-3.61236,-39.1325	1/1:72:0,72,0:0:0:72,0:2571,0:-231.423,-21.6742,0,-231.423,-21.6742,-231.423	1/2:31:0,28,3:0:0:28,3:997,108:-90.3738,-9.17208,-0.74324,-81.5611,0,-80.658	1/1:34:0,34,0:0:0:34,0:1211,0:-109.221,-10.235,0,-109.221,-10.235,-109.221	1/1:71:0,71,0:0:0:71,0:2480,0:-223.105,-21.3731,0,-223.105,-21.3731,-223.105	1/1:55:0,53,1:0:0:53,1:1877,36:-168.39,-15.9546,0,-165.452,-12.9522,-165.151	1/2:101:0,43,56:0:0:43,56:1518,2000:-286.606,-163.128,-150.184,-123.543,0,-106.686	1/2:45:0,30,15:0:0:30,15:1078,532:-131.548,-43.6976,-34.6667,-88.2062,0,-83.6907	1/2:68:0,39,29:0:0:39,29:1398,1040:-198.917,-85.1845,-73.4443,-114.091,0,-105.361	1/2:61:0,42,19:0:0:42,19:1440,653:-169.723,-53.3697,-40.7265,-116.696,0,-110.976	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:46:0,46,0:0:0:46,0:1614,0:-145.204,-13.8474,0,-145.204,-13.8474,-145.204	1/1:16:0,16,0:0:0:16,0:563,0:-50.7374,-4.81648,0,-50.7374,-4.81648,-50.7374	1/1:2:0,2,0:0:0:2,0:72,0:-6.82968,-0.60206,0,-6.82968,-0.60206,-6.82968	1/1:88:0,88,0:0:0:88,0:3097,0:-278.872,-26.4906,0,-278.872,-26.4906,-278.872	1/1:15:0,15,0:0:0:15,0:534,0:-48.296,-4.51545,0,-48.296,-4.51545,-48.296	1/1:13:0,13,0:0:0:13,0:468,0:-42.3913,-3.91339,0,-42.3913,-3.91339,-42.3913	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.172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chr01	28574656	.	C	T	100615	PASS	AB=0.529574;ABP=19.5786;AC=147;AF=0.790323;AN=186;AO=3702;CIGAR=1X;DP=4737;DPB=4737;DPRA=51.4783;EPP=3.40682;EPPR=75.6643;GTI=1;LEN=1;MEANALT=1.01087;MQM=56.507;MQMR=59.9449;NS=93;NUMALT=1;ODDS=0.0191129;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132447;QR=36962;RO=1034;RPL=1864;RPP=3.40682;RPPR=75.6643;RPR=1838;RUN=1;SAF=3702;SAP=8041.8;SAR=0;SRF=1034;SRP=2248.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:893:-79.9292,-7.52575,0	0/1:28:13,15:13:464:15:536:-39.8944,0,-33.6687	1/1:105:0,105:0:0:105:3772:-339.248,-31.6082,0	1/1:71:0,71:0:0:71:2544:-228.238,-21.3731,0	0/1:10:1,9:1:36:9:324:-26.4844,0,-0.587975	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:16:8,8:8:288:8:288:-21.4282,0,-21.4509	1/1:73:0,73:0:0:73:2607:-233.998,-21.9752,0	1/1:35:0,35:0:0:35:1252:-112.869,-10.5361,0	1/1:75:0,75:0:0:75:2684:-241.524,-22.5773,0	1/1:17:0,17:0:0:17:608:-55.0068,-5.11751,0	1/1:55:0,55:0:0:55:1966:-175.612,-16.5567,0	0/1:51:20,31:20:701:31:1116:-84.7306,0,-48.0592	0/1:50:15,35:15:540:35:1247:-97.459,0,-33.885	0/1:40:28,12:28:1004:12:423:-26.3369,0,-78.6347	1/1:34:0,34:0:0:34:1212:-109.186,-10.235,0	1/1:27:0,27:0:0:27:972:-87.7075,-8.12781,0	0/1:25:17,8:17:603:8:288:-18.7146,0,-47.0738	0/1:12:10,2:10:360:2:72:-3.21732,0,-29.131	0/1:68:21,47:21:744:47:1692:-131.895,0,-46.8124	0/1:129:59,70:59:2116:70:2512:-187.344,0,-151.876	0/1:37:17,20:17:608:20:716:-53.5451,0,-43.9139	1/1:55:1,54:1:32:54:1921:-169.406,-13.3573,0	1/1:42:2,40:2:63:40:1440:-123.717,-6.66011,0	1/1:45:0,45:0:0:45:1607:-144.632,-13.5464,0	0/1:124:69,55:69:2459:55:1969:-138.858,0,-184.219	1/1:122:0,122:0:0:122:4369:-392.654,-36.7257,0	1/1:27:0,27:0:0:27:963:-86.9585,-8.12781,0	0/1:126:41,85:41:1460:85:3039:-235.402,0,-93.7662	1/1:59:0,59:0:0:59:2112:-190.239,-17.7608,0	1/1:36:0,36:0:0:36:1268:-114.134,-10.8371,0	0/1:10:1,9:1:36:9:324:-26.4909,0,-0.587975	1/1:6:0,6:0:0:6:216:-19.7802,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.0892,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.535,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2403,-2.40824,0	0/1:118:54,64:54:1940:64:2283:-170.014,0,-139.355	1/1:77:0,77:0:0:77:2760:-248.497,-23.1793,0	0/1:39:21,18:21:756:18:620:-44.3311,0,-56.6261	.:.:.:.:.:.:.:.	0/1:76:41,35:41:1467:35:1256:-90.1794,0,-109.447	1/1:12:0,12:0:0:12:428:-38.7717,-3.61236,0	1/1:73:0,73:0:0:73:2620:-235.885,-21.9752,0	1/1:32:0,32:0:0:32:1152:-103.937,-9.63296,0	1/1:33:1,32:1:36:32:1148:-99.7204,-6.33572,0	1/1:71:0,71:0:0:71:2528:-227.44,-21.3731,0	1/1:54:0,54:0:0:54:1927:-173.262,-16.2556,0	0/1:104:56,48:56:2004:48:1728:-124.355,0,-149.326	0/1:47:16,31:16:576:31:1108:-85.7865,0,-38.0266	0/1:69:30,39:30:1071:39:1400:-105.24,0,-75.9305	0/1:59:18,41:18:644:41:1472:-113.875,0,-40.5298	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:48:0,48:0:0:48:1709:-153.704,-14.4494,0	1/1:15:0,15:0:0:15:540:-48.8348,-4.51545,0	1/1:2:0,2:0:0:2:72:-6.82968,-0.60206,0	1/1:89:0,89:0:0:89:3153:-283.617,-26.7917,0	1/1:15:0,15:0:0:15:531:-48.0255,-4.51545,0	1/1:14:0,14:0:0:14:495:-44.8146,-4.21442,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:25:0,25:0:0:25:892:-80.5769,-7.52575,0	1/1:55:0,55:0:0:55:1955:-176.134,-16.5567,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	1/1:196:0,196:0:0:196:7002:-629.213,-59.0019,0	0/1:82:40,42:40:1440:42:1500:-110.504,0,-105.213	1/1:21:0,21:0:0:21:752:-67.8883,-6.32163,0	1/1:52:0,52:0:0:52:1854:-166.569,-15.6536,0	1/1:104:2,102:2:72:102:3635:-319.547,-24.4704,0	0/1:90:55,35:55:1968:35:1252:-85.577,0,-150.302	1/1:12:0,12:0:0:12:432:-39.204,-3.61236,0	1/1:4:0,4:0:0:4:144:-13.2853,-1.20412,0	1/1:30:1,29:1:36:29:1031:-89.4124,-5.43522,0	1/1:5:0,5:0:0:5:180:-16.3333,-1.50515,0	0/1:47:29,18:29:1023:18:644:-43.9569,0,-78.1865	0/1:52:29,23:29:1036:23:828:-58.8611,0,-77.9004	1/1:51:0,51:0:0:51:1832:-165.053,-15.3525,0	1/1:139:1,138:1:36:138:4960:-442.127,-38.2449,0	0/1:28:14,14:14:504:14:504:-37.2222,0,-37.2693	1/1:83:0,83:0:0:83:2980:-267.824,-24.9855,0	1/1:13:0,13:0:0:13:468:-42.4193,-3.91339,0	0/1:65:34,31:34:1220:31:1116:-81.0824,0,-90.5399	0/1:90:38,52:38:1364:52:1852:-139.502,0,-95.968	0/1:149:59,90:59:2086:90:3226:-245.275,0,-143.155	0/1:50:21,29:21:756:29:1040:-78.4937,0,-53.3157	0/1:45:21,24:21:756:24:851:-63.3058,0,-54.8209	1/1:31:0,31:0:0:31:1116:-100.126,-9.33193,0	0/1:96:52,44:52:1857:44:1580:-113.497,0,-138.509	0/1:17:6,11:6:216:11:387:-29.709,0,-14.673	1/1:42:0,42:0:0:42:1512:-135.971,-12.6433,0	1/1:44:0,44:0:0:44:1565:-141.001,-13.2453,0	0/1:24:6,18:6:216:18:648:-51.3479,0,-12.5611	0/1:64:37,26:37:1328:26:936:-65.074,0,-100.578	0/1:39:25,14:25:896:14:499:-33.4669,0,-69.2202	1/1:112:0,112:0:0:112:4016:-361.439,-33.7154,0	1/1:71:0,71:0:0:71:2548:-229.407,-21.3731,0
chr01	28574683	.	A	G	75664.4	PASS	AB=0.521821;ABP=11.8236;AC=149;AF=0.801075;AN=186;AO=3621;CIGAR=1X;DP=4651;DPB=4651;DPRA=50.5435;EPP=7865.91;EPPR=2224.43;GTI=2;LEN=1;MEANALT=1.07609;MQM=56.5443;MQMR=59.911;NS=93;NUMALT=1;ODDS=0.288335;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128345;QR=36285;RO=1023;RPL=3621;RPP=7865.91;RPPR=2224.43;RPR=0;RUN=1;SAF=3621;SAP=7865.91;SAR=0;SRF=1023;SRP=2224.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:872:-78.5809,-7.52575,0	0/1:27:13,14:13:464:14:500:-36.9601,0,-33.9697	1/1:100:0,99:0:0:99:3508:-315.255,-29.802,0	1/1:68:0,68:0:0:68:2431:-218.716,-20.47,0	1/1:10:1,9:1:27:9:324:-26.7949,-0.310517,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:16:8,8:8:284:8:288:-21.4282,0,-21.0869	1/1:72:0,72:0:0:72:2531:-227.296,-21.6742,0	1/1:35:0,35:0:0:35:1243:-112.061,-10.5361,0	1/1:74:0,74:0:0:74:2607:-234.597,-22.2762,0	1/1:17:0,17:0:0:17:612:-55.3682,-5.11751,0	1/1:54:0,54:0:0:54:1904:-169.526,-16.2556,0	0/1:51:20,30:20:708:30:1071:-80.6255,0,-48.6349	0/1:50:15,35:15:519:35:1217:-94.7601,0,-31.9852	0/1:41:28,13:28:1000:13:446:-28.0972,0,-77.9731	1/1:30:0,30:0:0:30:1058:-95.3439,-9.0309,0	1/1:26:0,26:0:0:26:923:-83.3046,-7.82678,0	0/1:23:15,8:15:528:8:288:-19.3167,0,-40.9277	0/1:12:10,2:10:356:2:72:-3.21732,0,-28.768	0/1:69:21,48:21:744:48:1703:-132.593,0,-46.5086	0/1:126:58,68:58:2068:68:2415:-179.527,0,-148.461	0/1:35:16,19:16:564:19:680:-50.9135,0,-40.5543	1/1:53:0,53:0:0:53:1868:-167.857,-15.9546,0	1/1:43:2,41:2:72:41:1440:-122.592,-6.10757,0	1/1:46:0,46:0:0:46:1643:-147.808,-13.8474,0	0/1:119:69,50:69:2463:50:1768:-123.247,0,-186.094	1/1:117:0,117:0:0:117:4147:-372.845,-35.2205,0	1/1:26:0,26:0:0:26:928:-83.7196,-7.82678,0	0/1:126:42,83:42:1496:83:2959:-227.998,0,-96.9461	1/1:57:0,57:0:0:57:2014:-181.49,-17.1587,0	1/1:35:0,35:0:0:35:1234:-111.074,-10.5361,0	1/1:11:0,11:0:0:11:396:-35.9747,-3.31133,0	1/1:6:0,6:0:0:6:212:-19.4154,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.3255,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.535,-1.50515,0	1/1:6:0,6:0:0:6:212:-19.4064,-1.80618,0	0/1:112:53,59:53:1871:59:2095:-154.929,0,-134.953	1/1:76:0,76:0:0:76:2705:-243.562,-22.8783,0	0/1:38:21,17:21:743:17:604:-43.1984,0,-55.7533	.:.:.:.:.:.:.:.	0/1:74:39,35:39:1392:35:1217:-87.4252,0,-103.303	1/1:12:0,12:0:0:12:420:-38.0482,-3.61236,0	1/1:73:0,73:0:0:73:2595:-233.637,-21.9752,0	1/1:32:0,32:0:0:32:1108:-99.9825,-9.63296,0	1/1:35:0,34:0:0:34:1177:-105.804,-10.235,0	1/1:69:0,69:0:0:69:2440:-219.132,-20.7711,0	1/1:52:0,52:0:0:52:1830:-164.541,-15.6536,0	0/1:102:56,46:56:1992:46:1635:-116.611,0,-148.849	0/1:47:16,31:16:572:31:1104:-85.431,0,-37.665	0/1:67:28,39:28:983:39:1387:-104.671,0,-68.6135	0/1:58:19,39:19:676:39:1392:-106.99,0,-43.7083	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:47:0,47:0:0:47:1665:-149.786,-14.1484,0	1/1:14:0,14:0:0:14:504:-45.6045,-4.21442,0	1/1:2:0,2:0:0:2:72:-6.82968,-0.60206,0	1/1:85:0,85:0:0:85:3021:-272.038,-25.5876,0	1/1:15:0,15:0:0:15:536:-48.4761,-4.51545,0	1/1:14:0,14:0:0:14:500:-45.2719,-4.21442,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	1/1:24:0,24:0:0:24:860:-77.7017,-7.22472,0	1/1:55:0,55:0:0:55:1946:-175.339,-16.5567,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	1/1:201:0,201:0:0:201:7143:-641.727,-60.507,0	0/1:81:39,42:39:1388:42:1474:-108.489,0,-100.835	1/1:21:0,21:0:0:21:745:-67.2248,-6.32163,0	1/1:50:0,50:0:0:50:1781:-159.931,-15.0515,0	1/1:100:2,98:2:72:98:3502:-307.768,-23.2663,0	0/1:86:53,33:53:1896:33:1176:-80.0648,0,-145.03	1/1:12:0,12:0:0:12:428:-38.8416,-3.61236,0	1/1:4:0,4:0:0:4:140:-12.9183,-1.20412,0	1/1:29:0,28:0:0:28:995:-89.4373,-8.42884,0	1/1:5:0,5:0:0:5:180:-16.3333,-1.50515,0	0/1:47:28,19:28:980:19:671:-46.3818,0,-74.3174	0/1:54:32,21:32:1140:21:748:-51.2102,0,-86.5953	1/1:49:0,49:0:0:49:1722:-155.158,-14.7505,0	1/1:132:1,130:1:36:130:4630:-412.512,-36.1965,0	0/1:28:14,14:14:479:14:496:-36.5024,0,-35.0065	1/1:82:0,82:0:0:82:2944:-264.605,-24.6845,0	1/1:13:0,13:0:0:13:459:-41.6067,-3.91339,0	0/1:64:33,31:33:1175:31:1098:-79.7716,0,-86.791	0/1:91:38,53:38:1340:53:1878:-141.41,0,-93.5063	0/1:149:58,91:58:2056:91:3211:-244.095,0,-140.456	0/1:49:21,28:21:752:28:1000:-75.2737,0,-53.2558	0/1:45:21,24:21:743:24:856:-63.7575,0,-53.647	1/1:31:0,31:0:0:31:1086:-97.6682,-9.33193,0	0/1:94:52,42:52:1830:42:1485:-105.562,0,-136.683	0/1:19:7,12:7:252:12:432:-32.5693,0,-17.3094	1/1:39:0,39:0:0:39:1380:-124.143,-11.7402,0	1/1:45:0,45:0:0:45:1566:-141.102,-13.5464,0	0/1:24:6,18:6:212:18:640:-50.6253,0,-12.1954	0/1:64:39,25:39:1376:25:873:-59.6068,0,-104.714	0/1:38:25,13:25:896:13:442:-28.6238,0,-69.5212	1/1:108:0,108:0:0:108:3859:-347.331,-32.5112,0	1/1:68:0,68:0:0:68:2402:-216.281,-20.47,0
chr01	28623658	.	C	A	213126	PASS	AB=0.480988;ABP=24.2299;AC=149;AF=0.792553;AN=188;AO=10372;CIGAR=1X;DP=13896;DPB=13896;DPRA=0;EPP=22395.4;EPPR=7629.23;GTI=6;LEN=1;MEANALT=1.03191;MQM=59.9919;MQMR=59.9963;NS=94;NUMALT=1;ODDS=2.44547;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=363342;QR=125113;RO=3520;RPL=14;RPP=22404.1;RPPR=7637.91;RPR=10358;RUN=1;SAF=1;SAP=22516.8;SAR=10371;SRF=1;SRP=7637.91;SRR=3519;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1370:-123.598,-11.7402,0	0/1:175:104,71:104:3689:71:2494:-172.033,0,-279.533	1/1:118:0,118:0:0:118:4105:-369.64,-35.5215,0	1/1:294:1,293:1:36:293:10301:-923.431,-84.9045,0	0/1:26:11,15:11:396:15:521:-39.3895,0,-28.156	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/1:197:88,109:88:3130:109:3774:-280.559,0,-222.623	1/1:195:0,195:0:0:195:6758:-608.306,-58.7009,0	1/1:122:0,122:0:0:122:4298:-387.003,-36.7257,0	1/1:177:0,177:0:0:177:6259:-563.411,-53.2823,0	1/1:189:0,189:0:0:189:6639:-597.6,-56.8947,0	1/1:125:0,124:0:0:124:4322:-388.798,-37.3277,0	0/1:124:65,59:65:2269:59:2026:-145.28,0,-167.142	0/1:284:157,127:157:5521:127:4387:-309.522,0,-411.525	0/1:125:68,57:68:2395:57:1993:-142.014,0,-178.177	1/1:123:0,123:0:0:123:4296:-386.814,-37.0267,0	1/1:152:0,152:0:0:152:5319:-478.851,-45.7566,0	0/1:100:52,48:52:1852:48:1639:-117.691,0,-136.857	0/1:73:33,40:33:1188:40:1409:-105.131,0,-85.2534	0/1:236:143,93:143:5094:93:3260:-222.578,0,-387.562	0/1:88:58,30:58:2075:30:1051:-68.409,0,-160.529	0/1:98:74,24:74:2634:24:838:-46.2354,0,-207.805	1/1:132:0,132:0:0:132:4639:-417.678,-39.736,0	0/1:171:17,154:17:612:154:5422:-436.609,0,-3.9373	1/1:53:1,52:1:36:52:1800:-158.68,-12.3563,0	0/1:455:227,228:227:8106:228:8039:-586.573,0,-592.561	1/1:349:0,349:0:0:349:12335:-1110,-105.059,0	1/1:73:1,72:1:36:72:2513:-222.823,-18.3769,0	0/1:348:180,168:180:6377:168:5977:-433.281,0,-469.265	1/1:147:0,147:0:0:147:5229:-470.75,-44.2514,0	1/1:219:1,218:1:21:218:7686:-689.684,-63.8256,0	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:14:0,13:0:0:13:455:-41.062,-3.91339,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:616:314,302:314:11190:302:10322:-743.518,0,-821.554	1/1:190:0,190:0:0:190:6645:-598.143,-57.1957,0	0/1:147:78,69:78:2767:69:2356:-168.044,0,-205.018	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:160:86,74:86:3062:74:2618:-187.703,0,-227.644	1/1:106:0,106:0:0:106:3744:-337.162,-31.9092,0	1/1:123:0,123:0:0:123:4344:-391.139,-37.0267,0	1/1:224:0,224:0:0:224:7775:-699.804,-67.4307,0	1/1:100:0,100:0:0:100:3448:-310.534,-30.103,0	1/1:124:0,124:0:0:124:4333:-390.15,-37.3277,0	1/1:117:0,117:0:0:117:4086:-367.93,-35.2205,0	0/1:243:123,120:123:4400:120:4238:-308.455,0,-323.023	0/1:157:68,89:68:2418:89:3145:-236.015,0,-170.614	0/1:237:116,121:116:4110:121:4269:-313.046,0,-298.744	0/1:204:107,97:107:3820:97:3389:-243.815,0,-282.585	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:130:0,130:0:0:130:4626:-416.505,-39.1339,0	1/1:80:0,80:0:0:80:2811:-253.23,-24.0824,0	1/1:27:0,27:0:0:27:916:-82.7448,-8.12781,0	1/1:120:0,120:0:0:120:4209:-378.995,-36.1236,0	1/1:68:0,68:0:0:68:2379:-214.367,-20.47,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:38:15,23:15:525:23:807:-61.51,0,-36.1389	1/1:115:0,115:0:0:115:4060:-365.59,-34.6185,0	1/1:242:2,240:2:72:240:8411:-750.178,-66.0125,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:370:1,369:1:36:369:12948:-1161.56,-107.783,0	0/1:332:180,152:180:6406:152:5319:-378.91,0,-476.69	1/1:134:0,134:0:0:134:4763:-428.831,-40.338,0	1/1:77:1,76:1:36:76:2598:-230.472,-19.581,0	1/1:291:1,290:1:36:290:10204:-914.709,-84.0015,0	0/1:118:94,24:94:3351:24:825:-39.0419,0,-266.286	1/1:50:1,47:1:36:47:1633:-143.655,-11.211,0	1/1:88:0,88:0:0:88:3088:-278.147,-26.4906,0	1/1:198:0,198:0:0:198:6908:-621.804,-59.6039,0	1/1:28:1,27:1:36:27:943:-81.5844,-4.83057,0	0/1:103:57,46:57:2024:46:1619:-114.992,0,-151.424	0/1:113:64,49:64:2296:49:1726:-121.607,0,-172.885	1/1:313:0,313:0:0:313:10955:-985.871,-94.2224,0	1/1:185:0,185:0:0:185:6512:-586.173,-55.6906,0	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	1/1:134:0,134:0:0:134:4713:-424.337,-40.338,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:141:73,68:73:2587:68:2379:-171.922,0,-190.634	0/1:112:42,70:42:1480:70:2433:-185.508,0,-99.7764	0/1:226:133,93:133:4740:93:3265:-226.036,0,-358.725	0/1:173:84,89:84:2989:89:3125:-229.401,0,-217.163	0/1:172:80,92:80:2843:92:3224:-238.606,0,-204.332	1/1:203:0,203:0:0:203:7035:-633.232,-61.1091,0	0/1:369:184,185:184:6550:185:6419:-466.738,0,-478.503	0/1:77:41,36:41:1439:36:1236:-88.3565,0,-106.623	1/1:195:0,195:0:0:195:6773:-609.663,-58.7009,0	1/1:141:0,141:0:0:141:4950:-445.655,-42.4452,0	0/1:119:55,64:55:1953:64:2266:-168.38,0,-140.221	0/1:185:101,84:101:3540:84:2957:-210.673,0,-263.117	0/1:166:112,54:112:4004:54:1883:-119.777,0,-310.579	1/1:120:0,120:0:0:120:4212:-379.267,-36.1236,0	1/1:234:1,233:1:36:233:8211:-735.417,-66.8427,0
chr01	28674472	.	CGGAG	GGGAG,GGGAA	100402	PASS	AB=0.56704,0.425646;ABP=83.0774,101.499;AC=151,37;AF=0.803191,0.196809;AN=188;AO=4067,880;CIGAR=1X4M,1X3M1X;DP=4980;DPB=4980;DPRA=0,1.1076;EPP=8808.35,1913.91;EPPR=7.35324;GTI=1;LEN=1,5;MEANALT=1.76596,2.39024;MQM=48.2478,34.8966;MQMR=60;NS=94;NUMALT=2;ODDS=3.25785;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=144696,30742;QR=56;RO=2;RPL=3,0;RPP=8808.35,1913.91;RPPR=7.35324;RPR=4064,880;RUN=1,1;SAF=4067,880;SAP=8834.39,1913.91;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21,0:0:0:21,0:737,0:-65.9382,-6.32163,0,-65.9382,-6.32163,-65.9382	1/2:38:0,27,11:0:0:27,11:970,363:-105.426,-26.8086,-18.6808,-78.9349,0,-75.6236	1/1:79:0,79,0:0:0:79,0:2817,0:-252.233,-23.7814,0,-252.233,-23.7814,-252.233	1/1:73:0,73,0:0:0:73,0:2593,0:-233.3,-21.9752,0,-233.3,-21.9752,-233.3	1/2:20:0,10,10:0:0:10,10:360,354:-46.1941,-18.8313,-15.821,-27.6513,0,-24.641	1/2:20:0,8,12:0:0:8,12:288,430:-54.9691,-31.5295,-29.1213,-23.7838,0,-20.1715	1/2:62:0,25,37:0:0:25,37:883,1312:-169.733,-97.9005,-90.3748,-72.1744,0,-61.0363	1/1:76:0,76,0:0:0:76,0:2724,0:-244.205,-22.8783,0,-244.205,-22.8783,-244.205	1/1:45:0,45,0:0:0:45,0:1588,0:-142.706,-13.5464,0,-142.706,-13.5464,-142.706	1/1:63:0,63,0:0:0:63,0:2213,0:-198.834,-18.9649,0,-198.834,-18.9649,-198.834	1/1:112:0,111,0:0:0:111,0:3960,0:-355.388,-33.4143,0,-355.388,-33.4143,-355.388	1/1:95:0,94,0:0:0:94,0:3323,0:-297.721,-28.2968,0,-297.721,-28.2968,-297.721	1/2:75:0,42,33:0:0:42,33:1484,1160:-200.877,-80.945,-68.3018,-120.257,0,-110.323	1/2:54:0,38,16:0:0:38,16:1357,568:-132.56,-30.5307,-19.0916,-102.299,0,-97.4823	1/2:38:0,29,9:0:0:29,9:1044,318:-109.221,-24.3242,-15.5943,-85.2332,0,-82.5239	1/1:105:0,103,0:0:0:103,0:3663,0:-308.248,-31.0061,0,-308.248,-31.0061,-308.248	1/1:49:0,49,0:0:0:49,0:1748,0:-156.948,-14.7505,0,-156.948,-14.7505,-156.948	1/2:27:0,9,18:0:0:9,18:324,621:-67.7784,-41.4134,-38.7041,-26.6999,0,-21.2813	1/2:42:0,27,15:0:0:27,15:972,526:-117.015,-37.9687,-29.8409,-79.3754,0,-74.8599	1/2:70:0,40,30:0:0:40,30:1420,1057:-197.257,-82.3499,-70.3087,-115.251,0,-106.22	1/2:51:0,25,26:0:0:25,26:884,908:-113.835,-47.594,-40.0683,-66.5234,0,-58.6966	1/2:33:0,16,17:0:0:16,17:546,607:-90.6825,-46.8453,-42.0288,-44.1749,0,-39.0574	1/1:52:0,50,1:0:0:50,1:1775,34:-158.664,-15.0515,0,-156.065,-12.4425,-155.764	1/1:30:0,28,2:0:0:28,2:989,67:-83.0336,-8.42884,0,-79.2724,-4.41916,-78.6703	1/1:43:0,42,0:0:0:42,0:1498,0:-125.67,-12.6433,0,-125.67,-12.6433,-125.67	1/2:64:0,32,30:0:0:32,30:1129,1048:-171.698,-80.7377,-71.1048,-91.0163,0,-81.9854	1/1:125:0,125,0:0:0:125,0:4461,0:-374.854,-37.6288,0,-374.854,-37.6288,-374.854	1/1:15:0,15,0:0:0:15,0:536,0:-45.4817,-4.51545,0,-45.4817,-4.51545,-45.4817	1/2:84:0,53,31:0:0:53,31:1883,1077:-235.654,-82.8338,-66.8792,-153.158,0,-143.826	1/1:70:0,67,3:0:0:67,3:2369,107:-198.734,-20.169,0,-193.239,-14.4324,-192.336	1/1:51:0,51,0:0:0:51,0:1824,0:-164.164,-15.3525,0,-164.164,-15.3525,-164.164	1/1:1:0,1,0:0:0:1,0:27,0:-2.3994,-0.30103,0,-2.3994,-0.30103,-2.3994	1/1:7:0,7,0:0:0:7,0:252,0:-21.4153,-2.10721,0,-21.4153,-2.10721,-21.4153	1/1:3:0,3,0:0:0:3,0:108,0:-10.0532,-0.90309,0,-10.0532,-0.90309,-10.0532	1/1:7:0,7,0:0:0:7,0:248,0:-22.5952,-2.10721,0,-22.5952,-2.10721,-22.5952	1/1:23:0,23,0:0:0:23,0:824,0:-74.2399,-6.92369,0,-74.2399,-6.92369,-74.2399	1/2:104:0,61,43:0:0:61,43:2181,1487:-287.732,-111.311,-92.9478,-176.756,0,-163.812	1/1:36:0,36,0:0:0:36,0:1271,0:-106.944,-10.8371,0,-106.944,-10.8371,-106.944	1/2:73:0,44,29:0:0:44,29:1580,1009:-198.357,-69.907,-56.6617,-128.773,0,-120.043	1/1:5:0,4,0:0:0:4,0:143,0:-12.0265,-1.20412,0,-12.0265,-1.20412,-12.0265	1/2:36:0,17,18:0:0:17,18:583,631:-78.6172,-34.5697,-29.4522,-44.2173,0,-38.7987	1/1:40:0,40,0:0:0:40,0:1413,0:-119.019,-12.0412,0,-119.019,-12.0412,-119.019	1/1:58:0,58,0:0:0:58,0:2072,0:-173.84,-17.4597,0,-173.84,-17.4597,-173.84	1/1:59:0,59,0:0:0:59,0:2114,0:-189.758,-17.7608,0,-189.758,-17.7608,-189.758	1/1:43:0,43,0:0:0:43,0:1538,0:-138.146,-12.9443,0,-138.146,-12.9443,-138.146	1/1:61:0,61,0:0:0:61,0:2150,0:-193.157,-18.3628,0,-193.157,-18.3628,-193.157	1/1:54:0,54,0:0:0:54,0:1927,0:-172.759,-16.2556,0,-172.759,-16.2556,-172.759	1/2:52:0,32,20:0:0:32,20:1139,697:-146.083,-53.8411,-44.2082,-92.5811,0,-86.5605	1/2:41:0,22,19:0:0:22,19:782,665:-113.197,-50.1908,-43.5682,-63.3437,0,-57.6242	1/2:60:0,40,20:0:0:40,20:1422,699:-169.532,-53.8073,-41.7661,-116.063,0,-110.042	1/2:76:1,39,36:1:28:39,36:1400,1236:-204.502,-91.3455,-81.8229,-111.298,0,-102.678	1/1:8:0,8,0:0:0:8,0:284,0:-25.8799,-2.40824,0,-25.8799,-2.40824,-25.8799	1/1:101:0,101,0:0:0:101,0:3612,0:-323.835,-30.404,0,-323.835,-30.404,-323.835	1/1:56:1,55,0:1:28:55,0:1959,0:-172.928,-14.058,0,-173.229,-16.5567,-175.447	1/1:10:0,9,0:0:0:9,0:324,0:-29.0542,-2.70927,0,-29.0542,-2.70927,-29.0542	1/1:71:0,71,0:0:0:71,0:2532,0:-213.343,-21.3731,0,-213.343,-21.3731,-213.343	1/1:56:0,56,0:0:0:56,0:2006,0:-179.902,-16.8577,0,-179.902,-16.8577,-179.902	1/1:11:0,11,0:0:0:11,0:396,0:-35.8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chr01	28740155	.	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chr01	28928943	.	G	T	21905.3	PASS	AB=0.474811;ABP=20.5134;AC=37;AF=0.198925;AN=186;AO=1511;CIGAR=1X;DP=6747;DPB=6747;DPRA=1.48008;EPP=3284.11;EPPR=11327.3;GTI=1;LEN=1;MEANALT=1;MQM=38.1641;MQMR=59.9543;NS=93;NUMALT=1;ODDS=0.23328;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54126;QR=187285;RO=5235;RPL=1511;RPP=3284.11;RPPR=11344.6;RPR=0;RUN=1;SAF=1511;SAP=3284.11;SAR=0;SRF=5233;SRP=11353.3;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:65:38,27:38:1340:27:968:-59.3275,0,-101.308	0/0:102:101,1:101:3619:1:36:0,-27.1068,-322.316	0/0:114:114,0:114:4087:0:0:0,-34.3174,-368.015	0/1:62:21,41:21:752:41:1460:-102.559,0,-49.3424	0/1:33:19,14:19:684:14:504:-31.2922,0,-51.9563	0/1:122:66,56:66:2364:56:2012:-135.581,0,-176.293	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016	0/0:91:91,0:91:3263:0:0:0,-27.3937,-293.889	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:38:18,20:18:648:20:720:-47.3163,0,-47.2127	0/1:27:15,12:15:540:12:432:-28.4674,0,-40.8087	0/1:31:12,19:12:423:19:684:-48.78,0,-29.0731	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:44:44,0:44:1547:0:0:0,-13.2453,-139.462	0/1:27:18,9:18:648:9:320:-17.295,0,-50.5241	0/1:12:4,8:4:144:8:279:-18.6454,0,-9.70126	0/1:120:67,53:67:2412:53:1904:-127.112,0,-181.208	0/1:83:53,30:53:1873:30:1080:-65.7575,0,-143.861	0/1:144:32,112:32:1144:112:4009:-302.432,0,-59.9212	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:68:68,0:68:2417:0:0:0,-20.47,-217.655	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.123	0/1:320:188,132:188:6731:132:4729:-313.702,0,-509.533	0/0:173:172,1:172:6168:1:36:0,-48.732,-551.869	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/1:207:113,94:113:4047:94:3352:-228.364,0,-302.103	0/0:131:131,0:131:4657:0:0:0,-39.4349,-419.291	0/0:142:142,0:142:5087:0:0:0,-42.7463,-457.973	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	.:.:.:.:.:.:.:.	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:118:56,62:56:2016:62:2213:-154.101,0,-146.191	0/0:208:208,0:208:7445:0:0:0,-62.6142,-670.079	0/1:28:13,15:13:468:15:540:-35.2566,0,-34.0299	0/1:4:3,1:3:108:1:36:-2.14203,0,-8.87105	0/1:103:62,41:62:2232:41:1476:-92.0591,0,-170.137	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.696	0/0:33:33,0:33:1179:0:0:0,-9.93399,-106.417	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:120:120,0:120:4303:0:0:0,-36.1236,-387.445	0/0:109:108,1:108:3872:1:21:0,-30.7123,-346.574	0/1:142:75,67:75:2692:67:2404:-161.71,0,-199.778	0/1:71:51,20:51:1817:20:716:-40.3202,0,-142.427	0/1:63:28,35:28:1000:35:1252:-88.6046,0,-71.3505	0/1:25:13,12:13:464:12:432:-30.362,0,-34.5718	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:100:100,0:100:3552:0:0:0,-30.103,-319.888	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.454	0/0:85:85,0:85:3024:0:0:0,-25.5875,-272.389	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:211:211,0:211:7544:0:0:0,-63.5173,-678.999	0/1:193:109,84:109:3904:84:3011:-199.24,0,-293.45	0/0:45:45,0:45:1587:0:0:0,-13.5463,-143.106	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:149:149,0:149:5320:0:0:0,-44.8535,-478.932	0/1:50:23,27:23:828:27:972:-68.3444,0,-59.7926	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.597	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.147	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:164:75,89:75:2692:89:3191:-209.781,0,-193.155	0/1:33:25,8:25:900:8:288:-13.0519,0,-71.3788	0/0:105:105,0:105:3759:0:0:0,-31.6081,-338.509	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/1:148:83,65:83:2976:65:2315:-143.608,0,-223.52	0/0:77:77,0:77:2734:0:0:0,-23.1793,-246.3	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:120:75,45:75:2688:45:1620:-99.4593,0,-206.041	0/1:90:43,47:43:1535:47:1688:-110.291,0,-111.35	0/1:207:106,101:106:3776:101:3632:-248.55,0,-277.688	0/1:73:35,38:35:1256:38:1360:-93.781,0,-91.3701	0/1:32:20,12:20:716:12:432:-27.6843,0,-55.1348	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/1:77:37,40:37:1317:40:1423:-98.8703,0,-95.6505	0/1:42:23,19:23:819:19:675:-42.7462,0,-61.3883	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.454	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:20:10,10:10:360:10:360:-23.982,0,-26.7237	0/1:46:28,18:28:1000:18:644:-40.2734,0,-76.468	0/1:36:11,25:11:396:25:900:-65.7943,0,-25.1457	0/0:131:130,0:130:4651:0:0:0,-39.1339,-418.392	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805
chr01	28943343	.	C	G	99050.5	PASS	AB=0.480121;ABP=13.1975;AC=147;AF=0.798913;AN=184;AO=4691;CIGAR=1X;DP=6236;DPB=6236;DPRA=0;EPP=10146;EPPR=3301.68;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.9983;MQMR=60;NS=92;NUMALT=1;ODDS=0.459221;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167253;QR=55042;RO=1543;RPL=4686;RPP=10146;RPPR=3301.68;RPR=5;RUN=1;SAF=0;SAP=10189.4;SAR=4691;SRF=0;SRP=3353.59;SRR=1543;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:822:-74.303,-6.92369,0	0/1:51:31,20:31:1093:20:712:-49.0541,0,-83.3251	1/1:83:0,83:0:0:83:2963:-266.903,-24.9855,0	1/1:197:0,197:0:0:197:6982:-628.449,-59.3029,0	0/1:14:11,3:11:384:3:108:-5.86075,0,-30.6803	0/1:36:20,16:20:716:16:576:-41.3379,0,-53.9306	0/1:48:20,28:20:720:28:1000:-75.8659,0,-50.6793	1/1:56:0,56:0:0:56:1997:-180.002,-16.8577,0	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:130:0,130:0:0:130:4610:-415.067,-39.1339,0	0/1:105:63,42:63:2260:42:1498:-103.506,0,-172.054	0/1:84:41,43:41:1461:43:1529:-112.615,0,-106.498	0/1:73:32,41:32:1152:41:1472:-110.801,0,-82.015	1/1:61:0,61:0:0:61:2165:-195.115,-18.3628,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:38:16,22:16:572:22:792:-60.1665,0,-40.3743	0/1:45:26,19:26:932:19:676:-47.6216,0,-70.6525	0/1:84:37,47:37:1316:47:1688:-126.92,0,-93.4553	0/1:102:57,45:57:2012:45:1592:-112.863,0,-150.646	0/1:50:37,13:37:1332:13:449:-25.686,0,-105.131	1/1:73:2,71:2:72:71:2548:-222.734,-15.1385,0	1/1:38:0,38:0:0:38:1332:-120.178,-11.4391,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	0/1:127:62,65:62:2224:65:2286:-167.768,0,-162.193	1/1:134:0,134:0:0:134:4783:-430.628,-40.338,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	0/1:197:101,96:101:3598:96:3408:-247.631,0,-264.721	1/1:74:0,74:0:0:74:2629:-236.856,-22.2762,0	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:242:134,108:134:4726:108:3868:-275.466,0,-352.646	1/1:64:0,64:0:0:64:2261:-203.752,-19.2659,0	0/1:48:27,21:27:972:21:756:-53.9178,0,-73.3485	.:.:.:.:.:.:.:.	0/1:114:54,60:54:1925:60:2151:-159.54,0,-139.207	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:108:0,108:0:0:108:3846:-346.336,-32.5112,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	1/1:41:0,41:0:0:41:1453:-131.064,-12.3422,0	1/1:47:0,47:0:0:47:1654:-149.144,-14.1484,0	0/1:93:47,46:47:1692:46:1640:-119.893,0,-124.571	0/1:60:28,32:28:989:32:1152:-85.9283,0,-71.2602	0/1:126:63,63:63:2253:63:2252:-165.013,0,-165.101	0/1:44:28,16:28:1004:16:572:-38.5681,0,-77.4305	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:80:0,80:0:0:80:2844:-256.197,-24.0824,0	1/1:22:0,22:0:0:22:771:-69.7097,-6.62266,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:9:4,5:4:144:5:172:-13.1081,0,-10.6043	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:129:0,129:0:0:129:4595:-413.716,-38.8329,0	0/1:114:55,58:55:1944:58:2068:-152.015,0,-140.857	1/1:43:0,43:0:0:43:1527:-137.722,-12.9443,0	1/1:54:0,54:0:0:54:1911:-172.267,-16.2556,0	1/1:88:0,88:0:0:88:3139:-282.736,-26.4906,0	0/1:118:79,39:79:2844:39:1392:-90.0575,0,-220.676	1/1:42:0,42:0:0:42:1497:-135.023,-12.6433,0	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:39:0,39:0:0:39:1395:-125.848,-11.7402,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:48:23,25:23:824:25:884:-65.4289,0,-60.0339	0/1:54:17,37:17:608:37:1309:-101.854,0,-38.7964	1/1:82:0,82:0:0:82:2923:-263.305,-24.6845,0	1/1:64:0,64:0:0:64:2280:-205.462,-19.2659,0	0/1:49:21,28:21:756:28:1008:-76.2859,0,-53.6168	1/1:121:0,121:0:0:121:4315:-388.527,-36.4246,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:63:29,34:29:1040:34:1216:-90.7817,0,-74.9495	0/1:76:31,45:31:1116:45:1608:-122.132,0,-77.8734	0/1:128:57,71:57:2029:71:2548:-191.038,0,-144.349	0/1:53:23,29:23:813:29:1035:-77.5331,0,-57.5586	0/1:90:45,45:45:1612:45:1615:-118.547,0,-118.277	1/1:73:0,73:0:0:73:2602:-234.428,-21.9752,0	0/1:138:82,56:82:2936:56:1995:-138.281,0,-222.932	0/1:26:9,17:9:309:17:604:-46.8638,0,-20.3139	1/1:90:0,90:0:0:90:3198:-288.044,-27.0927,0	1/1:92:0,92:0:0:92:3281:-295.509,-27.6948,0	0/1:34:21,13:21:741:13:464:-31.8625,0,-56.7766	0/1:113:64,49:64:2269:49:1756:-124.308,0,-170.455	0/1:74:46,28:46:1652:28:1000:-68.0392,0,-126.692	1/1:84:0,84:0:0:84:3003:-270.501,-25.2865,0	1/1:135:0,135:0:0:135:4835:-435.303,-40.6391,0
chr01	28984561	.	T	A	115088	PASS	AB=0.469231;ABP=27.598;AC=149;AF=0.792553;AN=188;AO=5339;CIGAR=1X;DP=6939;DPB=6939;DPRA=0;EPP=11397.6;EPPR=3358.85;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.986;MQMR=59.9919;NS=94;NUMALT=1;ODDS=3.41856;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190739;QR=57236;RO=1597;RPL=5321;RPP=11440.7;RPPR=3358.85;RPR=18;RUN=1;SAF=5;SAP=11553.1;SAR=5334;SRF=0;SRP=3470.85;SRR=1597;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1547:-139.519,-13.2453,0	0/1:51:16,35:16:576:35:1247:-97.1815,0,-36.8225	1/1:100:0,100:0:0:100:3576:-322.048,-30.103,0	1/1:156:0,156:0:0:156:5574:-501.783,-46.9607,0	0/1:41:24,17:24:864:17:612:-43.0712,0,-65.7403	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/1:36:9,27:9:320:27:968:-76.6003,0,-18.3053	1/1:126:0,126:0:0:126:4487:-403.999,-37.9298,0	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	1/1:91:0,91:0:0:91:3260:-293.621,-27.3937,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:93:0,93:0:0:93:3311:-298.209,-27.9958,0	0/1:45:20,25:20:716:25:900:-67.7747,0,-51.2214	0/1:55:23,32:23:828:32:1152:-87.4335,0,-58.2875	0/1:59:24,35:24:856:35:1245:-94.5928,0,-59.6003	1/1:71:0,71:0:0:71:2535:-228.401,-21.3731,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/1:41:16,25:16:576:25:896:-68.6181,0,-39.8328	0/1:87:44,43:44:1561:43:1540:-112.703,0,-114.59	0/1:174:106,68:106:3796:68:2432:-166.756,0,-289.43	0/1:36:19,17:19:684:17:608:-44.2149,0,-51.0532	1/1:65:2,63:2:72:63:2260:-196.826,-12.7302,0	1/1:47:1,46:1:36:46:1643:-144.56,-10.5501,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:174:96,78:96:3440:78:2780:-198.062,0,-257.434	1/1:180:0,179:0:0:179:6385:-574.378,-53.8844,0	1/1:27:0,27:0:0:27:953:-86.0842,-8.12781,0	0/1:200:110,90:110:3952:90:3222:-229.996,0,-295.664	1/1:151:2,149:2:72:149:5326:-472.638,-38.6188,0	1/1:66:0,66:0:0:66:2342:-211.037,-19.868,0	1/1:17:0,17:0:0:17:597:-54.057,-5.11751,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:14:6,8:6:212:8:283:-21.5978,0,-15.2104	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:135:66,69:66:2368:69:2472:-182.095,0,-172.739	1/1:50:0,50:0:0:50:1767:-159.311,-15.0515,0	0/1:58:26,32:26:936:32:1135:-84.9983,0,-67.0997	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:88:47,41:47:1684:41:1464:-105.565,0,-125.356	1/1:42:0,42:0:0:42:1492:-134.575,-12.6433,0	1/1:122:0,122:0:0:122:4365:-393.023,-36.7257,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:82:0,82:0:0:82:2942:-265.009,-24.6845,0	1/1:81:0,81:0:0:81:2899:-261.145,-24.3834,0	0/1:141:79,62:79:2829:62:2213:-156.989,0,-212.402	0/1:86:50,36:50:1781:36:1281:-89.7027,0,-134.682	0/1:91:59,32:59:2116:32:1148:-76.2361,0,-163.315	0/1:80:45,35:45:1620:35:1248:-88.5425,0,-122.008	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:82:0,82:0:0:82:2952:-265.913,-24.6845,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:106:0,106:0:0:106:3796:-341.838,-31.9092,0	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:74:0,74:0:0:74:2630:-236.947,-22.2762,0	1/1:70:0,69:0:0:69:2463:-221.563,-20.7711,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:146:2,144:2:72:144:5144:-456.264,-37.1137,0	0/1:105:62,43:62:2213:43:1508:-104.401,0,-167.825	1/1:75:0,75:0:0:75:2676:-241.086,-22.5773,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:157:0,157:0:0:157:5610:-505.022,-47.2617,0	0/1:101:67,34:67:2400:34:1224:-80.063,0,-185.853	1/1:81:0,81:0:0:81:2907:-261.864,-24.3834,0	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	1/1:38:0,38:0:0:38:1341:-120.989,-11.4391,0	1/1:48:0,48:0:0:48:1700:-153.286,-14.4494,0	0/1:86:49,37:49:1760:37:1328:-93.9337,0,-132.795	0/1:83:49,34:49:1764:34:1208:-84.0406,0,-134.058	1/1:109:0,109:0:0:109:3903:-351.463,-32.8123,0	1/1:184:0,184:0:0:184:6601:-594.166,-55.3895,0	0/1:59:32,27:32:1148:27:968:-69.6766,0,-85.8691	1/1:124:3,121:3:108:121:4296:-376.735,-27.2526,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:105:57,48:57:2048:48:1698:-121.496,0,-152.983	0/1:71:34,37:34:1216:37:1328:-98.4491,0,-88.3734	0/1:164:80,84:80:2864:84:3016:-222.301,0,-208.628	0/1:57:30,27:30:1076:27:959:-69.4667,0,-79.9941	0/1:50:22,28:22:792:28:1000:-75.2639,0,-56.5542	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:86:50,36:50:1792:36:1292:-90.6952,0,-135.674	0/1:27:15,12:15:536:12:419:-29.4829,0,-40.447	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:71:0,71:0:0:71:2535:-228.401,-21.3731,0	0/1:48:14,34:14:500:34:1220:-95.6574,0,-30.8867	0/1:105:56,49:56:2000:49:1747:-125.905,0,-148.666	0/1:79:49,30:49:1760:30:1080:-73.7319,0,-134.903	1/1:108:0,108:0:0:108:3850:-346.696,-32.5112,0	1/1:99:0,98:0:0:98:3507:-315.48,-29.5009,0
chr01	28986656	.	TAA	CAA,CAG	154371	PASS	AB=0.514396,0.482933;ABP=9.07482,11.5344;AC=149,39;AF=0.792553,0.207447;AN=188;AO=5554,1637;CIGAR=1X2M,1X1M1X;DP=7205;DPB=7205;DPRA=0,1.41205;EPP=12063.4,3557.71;EPPR=9.52472;GTI=0;LEN=1,3;MEANALT=1.59574,2.17778;MQM=59.3356,46.121;MQMR=60;NS=94;NUMALT=2;ODDS=0.228765;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=198504,58145;QR=108;RO=3;RPL=0,0;RPP=12063.4,3557.71;RPPR=9.52472;RPR=5554,1637;RUN=1,1;SAF=5554,1637;SAP=12063.4,3557.71;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14,0:0:0:14,0:504,0:-45.6963,-4.21442,0,-45.6963,-4.21442,-45.6963	1/2:60:0,20,40:0:0:20,40:716,1436:-173.323,-114.934,-108.913,-58.7448,0,-46.7036	1/1:113:0,113,0:0:0:113,0:4060,0:-365.484,-34.0164,0,-365.484,-34.0164,-365.484	1/1:195:0,195,0:0:0:195,0:6972,0:-627.402,-58.7009,0,-627.402,-58.7009,-627.402	1/2:47:0,27,20:0:0:27,20:960,713:-136.187,-57.9856,-49.8577,-78.5554,0,-72.5348	1/2:35:0,22,13:0:0:22,13:787,468:-102.074,-37.9591,-31.3364,-64.4711,0,-60.5577	1/2:55:0,17,38:0:0:17,38:612,1343:-157.656,-107.716,-102.599,-50.2959,0,-38.8568	1/1:97:0,97,0:0:0:97,0:3447,0:-310.187,-29.1999,0,-310.187,-29.1999,-310.187	1/1:63:0,63,0:0:0:63,0:2249,0:-202.67,-18.9649,0,-202.67,-18.9649,-202.67	1/1:62:0,62,0:0:0:62,0:2232,0:-201.109,-18.6639,0,-201.109,-18.6639,-201.109	1/1:75:0,75,0:0:0:75,0:2685,0:-241.747,-22.5773,0,-241.747,-22.5773,-241.747	1/1:78:0,78,0:0:0:78,0:2800,0:-252.146,-23.4803,0,-252.146,-23.4803,-252.146	1/2:49:0,26,23:0:0:26,23:932,818:-141.513,-65.5677,-57.7409,-76.2983,0,-69.3746	1/2:75:0,28,47:0:0:28,47:1004,1663:-215.836,-134.011,-125.582,-82.1797,0,-68.0313	1/2:70:0,33,37:0:0:33,37:1188,1316:-203.478,-106.596,-96.6624,-97.2378,0,-86.0997	1/1:44:0,43,0:0:0:43,0:1544,0:-138.872,-12.9443,0,-138.872,-12.9443,-138.872	1/1:30:0,30,0:0:0:30,0:1080,0:-97.4683,-9.0309,0,-97.4683,-9.0309,-97.4683	1/2:27:0,18,9:0:0:18,9:648,322:-79.1003,-26.223,-20.8045,-53.2324,0,-50.5232	1/2:52:0,31,21:0:0:31,21:1116,748:-151.357,-60.2977,-50.9658,-91.4133,0,-85.0917	1/2:99:0,65,34:0:0:65,34:2292,1211:-284.676,-98.1358,-78.5689,-186.893,0,-176.658	1/2:133:0,71,62:0:0:71,62:2544,2199:-384.26,-176.813,-155.44,-207.801,0,-189.137	1/2:66:0,22,44:0:0:22,44:792,1529:-187.291,-122.768,-116.145,-64.8767,0,-51.6313	1/1:59:0,59,0:0:0:59,0:2102,0:-189.258,-17.7608,0,-189.258,-17.7608,-189.258	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2725,-8.72987,0,-94.2725,-8.72987,-94.2725	1/2:212:0,111,101:0:0:111,101:3944,3579:-608.936,-287.909,-254.494,-321.38,0,-290.975	1/1:152:0,152,0:0:0:152,0:5440,0:-489.39,-45.7566,0,-489.39,-45.7566,-489.39	1/1:40:0,40,0:0:0:40,0:1420,0:-127.956,-12.0412,0,-127.956,-12.0412,-127.956	1/2:137:0,71,65:0:0:71,65:2548,2297:-392.834,-185.048,-163.675,-207.784,0,-188.217	1/1:120:0,120,0:0:0:120,0:4294,0:-386.432,-36.1236,0,-386.432,-36.1236,-386.432	1/1:90:0,90,0:0:0:90,0:3228,0:-290.718,-27.0927,0,-290.718,-27.0927,-290.718	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:5:0,3,2:0:0:3,2:108,70:-14.7424,-5.96751,-5.06442,-9.12564,0,-8.52358	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:16:0,16,0:0:0:16,0:568,0:-51.4068,-4.81648,0,-51.4068,-4.81648,-51.4068	1/2:166:1,74,91:1:36:74,91:2651,3262:-474.732,-258.925,-239.586,-213.167,0,-188.711	1/1:95:0,95,0:0:0:95,0:3383,0:-304.642,-28.5979,0,-304.642,-28.5979,-304.642	1/2:54:0,23,31:0:0:23,31:819,1087:-153.627,-86.9598,-80.0361,-67.0179,0,-57.6859	1/2:5:0,3,2:0:0:3,2:108,72:-15.0012,-6.18746,-5.28437,-9.17208,0,-8.57002	1/2:188:0,124,64:0:0:124,64:4436,2300:-546.574,-185.08,-147.752,-361.849,0,-342.583	1/1:25:1,24,0:1:36:24,0:860,0:-74.1005,-3.92748,0,-74.4015,-7.22472,-77.339	1/1:113:0,113,0:0:0:113,0:4014,0:-361.383,-34.0164,0,-361.383,-34.0164,-361.383	1/1:40:0,38,1:0:0:38,1:1354,36:-121.726,-11.4391,0,-118.817,-8.52064,-118.516	1/1:50:0,49,0:0:0:49,0:1760,0:-158.299,-14.7505,0,-158.299,-14.7505,-158.299	1/1:82:0,82,0:0:0:82,0:2915,0:-262.518,-24.6845,0,-262.518,-24.6845,-262.518	1/1:93:0,93,0:0:0:93,0:3316,0:-298.19,-27.9958,0,-298.19,-27.9958,-298.19	1/2:96:0,57,39:0:0:57,39:2035,1393:-278.369,-112.552,-95.3936,-166.172,0,-154.431	1/2:70:0,36,34:0:0:36,34:1288,1220:-203.909,-98.9139,-88.0768,-105.352,0,-95.1169	1/2:116:0,57,58:0:0:57,58:2029,2047:-329.935,-164.723,-147.564,-165.293,0,-147.834	1/2:107:0,62,44:0:0:62,44:2217,1568:-306.732,-125.958,-107.295,-180.846,0,-167.601	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:333:0,332,1:0:0:332,1:11886,36:-1068.61,-99.942,0,-1065.72,-96.6945,-1065.42	1/1:58:0,58,0:0:0:58,0:2084,0:-187.77,-17.4597,0,-187.77,-17.4597,-187.77	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:110:0,110,0:0:0:110,0:3928,0:-353.187,-33.1133,0,-353.187,-33.1133,-353.187	1/1:18:0,18,0:0:0:18,0:644,0:-58.2621,-5.41854,0,-58.2621,-5.41854,-58.26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chr01	28986759	.	T	C	34549.5	PASS	AB=0.495805;ABP=3.6298;AC=40;AF=0.212766;AN=188;AO=2027;CIGAR=1X;DP=8807;DPB=8807;DPRA=1.40133;EPP=4249.63;EPPR=14232.5;GTI=2;LEN=1;MEANALT=1.02222;MQM=59.9961;MQMR=59.9957;NS=94;NUMALT=1;ODDS=0.525619;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72312;QR=242734;RO=6779;RPL=2015;RPP=4300.97;RPPR=14300.9;RPR=12;RUN=1;SAF=6;SAP=4352.62;SAR=2021;SRF=8;SRP=14654;SRR=6771;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/1:151:77,74:77:2768:74:2659:-194.1,0,-203.905	0/0:194:194,0:194:6946:0:0:0,-58.3998,-625.204	0/0:181:181,0:181:6452:0:0:0,-54.4864,-580.767	0/1:56:33,23:33:1188:23:816:-56.904,0,-90.3709	0/1:44:15,29:15:540:29:1036:-80.3086,0,-35.6912	0/1:82:37,45:37:1324:45:1612:-120.686,0,-94.7776	0/0:161:161,0:161:5752:0:0:0,-48.4658,-517.797	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.859	0/0:190:190,0:190:6797:0:0:0,-57.1957,-611.801	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:54:27,27:27:972:27:959:-70.3698,0,-71.5423	0/1:33:18,15:18:648:15:536:-38.6408,0,-48.7179	0/1:61:30,31:30:1080:31:1108:-81.6682,0,-79.1504	0/0:41:41,0:41:1467:0:0:0,-12.3422,-132.325	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:30:20,10:20:720:10:351:-22.8958,0,-56.0979	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:165:87,78:87:3100:78:2771:-199.962,0,-229.559	0/1:119:65,54:65:2313:54:1928:-137.974,0,-172.606	0/1:151:48,103:48:1715:103:3671:-285.139,0,-109.179	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:106:97,9:97:3488:9:310:0,-3.67581,-285.896	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/1:411:200,211:200:7153:211:7506:-551.86,0,-520.103	0/0:197:197,0:197:7064:0:0:0,-59.3029,-635.819	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:252:134,118:134:4799:118:4196:-301.962,0,-356.205	0/0:156:156,0:156:5580:0:0:0,-46.9607,-502.324	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:176:81,95:81:2904:95:3395:-252.784,0,-208.614	0/0:273:273,0:273:9735:0:0:0,-82.1812,-876.101	0/1:49:22,27:22:788:27:972:-73.0474,0,-56.4943	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:145:85,60:85:3044:60:2123:-147.687,0,-230.54	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:136:136,0:136:4876:0:0:0,-40.9401,-438.992	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:63:62,1:62:2232:1:36:0,-15.3666,-197.545	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/0:115:113,2:113:4056:2:72:0,-27.7817,-358.389	0/1:248:122,126:122:4376:126:4499:-330.424,0,-319.357	0/1:125:66,59:66:2368:59:2095:-151.191,0,-175.749	0/1:179:92,87:92:3304:87:3104:-225.704,0,-243.694	0/1:72:40,32:40:1436:32:1148:-81.9557,0,-107.864	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:133:133,0:133:4751:0:0:0,-40.037,-427.748	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:23:12,11:12:424:11:396:-29.0591,0,-31.5727	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:379:377,2:377:13480:2:72:0,-107.254,-1206.15	0/1:212:120,92:120:4316:92:3300:-233.4,0,-324.796	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:119:118,1:118:4220:1:36:0,-32.2243,-376.374	0/0:217:217,0:217:7772:0:0:0,-65.3235,-699.51	0/1:124:35,88:35:1260:88:3133:-244.81,0,-76.319	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:95:68,27:68:2444:27:956:-57.7573,0,-191.617	0/1:96:53,43:53:1900:43:1540:-109.994,0,-142.379	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.671	0/0:200:200,0:200:7188:0:0:0,-60.206,-646.972	0/1:88:43,45:43:1540:45:1594:-117.258,0,-112.402	0/0:121:119,2:119:4272:2:72:0,-29.5879,-377.82	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:115:61,54:61:2188:54:1931:-139.447,0,-162.567	0/1:144:72,72:72:2573:72:2567:-187.931,0,-188.47	0/1:123:66,57:66:2364:57:2035:-146.396,0,-175.992	0/1:90:43,47:43:1540:47:1692:-125.474,0,-111.8	0/1:31:17,14:17:612:14:503:-36.2758,0,-46.0815	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.786	0/1:130:63,67:63:2268:67:2404:-177.483,0,-165.248	0/1:36:17,19:17:612:19:683:-50.963,0,-44.5764	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:8:3,5:3:108:5:171:-13.3172,0,-7.66693	0/1:52:31,21:31:1104:21:756:-52.7137,0,-84.0171	0/1:57:24,33:24:856:33:1176:-88.9891,0,-60.2024	0/0:97:97,0:97:3464:0:0:0,-29.1999,-311.973	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809
chr01	28988528	.	GAAGGA	TGAGGA,TAAGGA	115488	PASS	AB=0.487548,0.506489;ABP=6.84979,4.053;AC=150,38;AF=0.797872,0.202128;AN=188;AO=3987,1450;CIGAR=2X4M,1X5M;DP=5481;DPB=5481;DPRA=0,1.59323;EPP=8625.96,3142.97;EPPR=0;GTI=7;LEN=2,1;MEANALT=1.88298,2.48837;MQM=59.9839,59.9897;MQMR=0;NS=94;NUMALT=2;ODDS=0.672865;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=141136,51666;QR=0;RO=0;RPL=3986,1449;RPP=8651.99,3142.97;RPPR=0;RPR=1,1;RUN=1,1;SAF=3,0;SAP=8634.63,3151.65;SAR=3984,1450;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19,0:0:0:19,0:662,0:-59.903,-5.71957,0,-59.903,-5.71957,-59.903	1/2:112:0,49,63:0:0:49,63:1748,2244:-325.757,-183.259,-168.508,-142.854,0,-123.89	1/1:68:0,68,0:0:0:68,0:2413,0:-217.426,-20.47,0,-217.426,-20.47,-217.426	1/1:124:0,124,0:0:0:124,0:4396,0:-395.813,-37.3277,0,-395.813,-37.3277,-395.813	1/2:37:0,14,23:0:0:14,23:497,828:-108.414,-67.9204,-63.706,-40.8499,0,-33.9262	1/2:35:0,23,12:0:0:23,12:813,424:-101.097,-34.8841,-27.9604,-66.566,0,-62.9536	1/2:69:0,38,30:0:0:38,30:1340,1068:-196.146,-87.0415,-75.6023,-109.099,0,-100.068	1/1:143:0,141,0:0:0:141,0:4994,0:-449.304,-42.4452,0,-449.304,-42.4452,-449.304	1/1:54:0,53,0:0:0:53,0:1879,0:-169.029,-15.9546,0,-169.029,-15.9546,-169.029	1/1:87:0,87,0:0:0:87,0:3077,0:-277.158,-26.1896,0,-277.158,-26.1896,-277.158	1/1:28:0,27,0:0:0:27,0:918,0:-82.5664,-8.12781,0,-82.5664,-8.12781,-82.5664	1/1:36:0,36,0:0:0:36,0:1262,0:-113.88,-10.8371,0,-113.88,-10.8371,-113.88	1/2:37:0,8,29:0:0:8,29:277,1024:-106.25,-83.7405,-81.3323,-22.8569,0,-14.127	1/2:42:0,27,15:0:0:27,15:955,532:-121.48,-43.6976,-35.5698,-78.137,0,-73.6215	1/2:20:0,6,14:0:0:6,14:214,500:-58.5667,-41.1218,-39.3156,-17.8016,0,-13.5872	1/1:18:0,17,1:0:0:17,1:599,36:-53.8798,-5.11751,0,-50.9419,-1.82027,-50.6409	1/1:28:0,28,0:0:0:28,0:996,0:-89.9555,-8.42884,0,-89.9555,-8.42884,-89.9555	1/2:21:0,14,7:0:0:14,7:504,244:-61.3237,-20.1922,-15.9778,-41.4837,0,-39.3765	1/2:23:0,13,10:0:0:13,10:462,356:-67.0187,-29.3709,-25.4576,-38.0034,0,-34.9931	1/2:121:0,65,55:0:0:65,55:2286,1934:-343.497,-157.417,-137.85,-186.072,0,-169.516	1/2:59:0,23,36:0:0:23,36:828,1284:-172.578,-105.026,-98.1026,-67.9098,0,-57.0727	1/2:66:0,16,50:0:0:16,50:572,1787:-192.701,-146.061,-141.245,-46.9972,0,-31.9457	1/1:25:0,25,0:0:0:25,0:879,0:-79.4258,-7.52575,0,-79.4258,-7.52575,-79.4258	1/2:82:0,72,9:0:0:72,9:2571,320:-235.692,-26.0827,-4.40851,-209.615,0,-206.906	1/1:21:0,20,0:0:0:20,0:707,0:-63.5948,-6.0206,0,-63.5948,-6.0206,-63.5948	1/2:268:0,144,122:0:0:144,122:5128,4360:-773.516,-355.557,-312.208,-418.023,0,-381.297	1/1:61:0,60,1:0:0:60,1:2150,36:-193.39,-18.0618,0,-190.452,-14.7646,-190.151	1/1:12:0,12,0:0:0:12,0:421,0:-38.2235,-3.61236,0,-38.2235,-3.61236,-38.2235	1/2:148:0,67,80:0:0:67,80:2327,2864:-422.719,-233.555,-213.386,-189.156,0,-165.074	1/1:135:0,134,0:0:0:134,0:4740,0:-426.42,-40.338,0,-426.42,-40.338,-426.42	1/1:90:0,86,1:0:0:86,1:3019,36:-271.607,-25.8886,0,-268.669,-22.942,-268.368	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:108:0,45,63:0:0:45,63:1597,2248:-313.736,-183.619,-170.072,-130.473,0,-111.508	1/1:186:0,183,0:0:0:183,0:6409,0:-576.51,-55.0885,0,-576.51,-55.0885,-576.51	1/2:18:0,6,12:0:0:6,12:216,432:-53.2333,-35.6088,-33.8027,-17.9843,0,-14.372	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:102:0,48,52:0:0:48,52:1705,1845:-289.334,-150.402,-135.952,-139.012,0,-123.359	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:75:0,75,0:0:0:75,0:2659,0:-239.555,-22.5773,0,-239.555,-22.5773,-239.555	1/1:20:0,20,0:0:0:20,0:698,0:-63.1407,-6.0206,0,-63.1407,-6.0206,-63.1407	1/1:29:0,29,0:0:0:29,0:1020,0:-92.1111,-8.72987,0,-92.1111,-8.72987,-92.1111	1/1:55:0,55,0:0:0:55,0:1970,0:-177.575,-16.5567,0,-177.575,-16.5567,-177.575	1/1:71:0,69,2:0:0:69,2:2450,72:-220.394,-20.7711,0,-214.519,-14.5364,-213.917	1/2:152:0,61,91:0:0:61,91:2160,3220:-438.578,-262.628,-244.266,-176.303,0,-148.91	1/2:91:0,45,46:0:0:45,46:1595,1652:-265.058,-135.121,-121.575,-130.294,0,-116.446	1/2:114:0,61,51:0:0:61,51:2155,1824:-324.279,-148.782,-130.419,-175.545,0,-160.193	1/2:119:0,67,51:0:0:67,51:2393,1805:-342.12,-147.018,-126.849,-195.098,0,-179.745	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/1:73:0,73,0:0:0:73,0:2584,0:-232.809,-21.9752,0,-232.809,-21.9752,-232.809	1/1:22:0,22,0:0:0:22,0:782,0:-70.703,-6.62266,0,-70.703,-6.62266,-70.703	1/1:12:0,11,0:0:0:11,0:396,0:-35.687,-3.31133,0,-35.687,-3.31133,-35.687	1/1:63:0,63,0:0:0:63,0:2209,0:-199.074,-18.9649,0,-199.074,-18.9649,-199.074	1/1:19:0,19,0:0:0:19,0:654,0:-59.1797,-5.71957,0,-59.1797,-5.71957,-59.1797	1/1:9:0,9,0:0:0:9,0:320,0:-29.1426,-2.70927,0,-29.1426,-2.70927,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chr01	28989834	.	GTGT	GTGC,ATGC	146185	PASS	AB=0.502563,0.493217;ABP=3.19949,4.33597;AC=148,38;AF=0.795699,0.204301;AN=186;AO=5212,1645;CIGAR=3M1X,1X2M1X;DP=6892;DPB=6892.75;DPRA=0,1.36518;EPP=11182.2,3557.73;EPPR=9.52472;GTI=3;LEN=1,4;MEANALT=1.7957,2.35556;MQM=59.5827,53.8316;MQMR=60;NS=93;NUMALT=2;ODDS=0.430719;PAIRED=0,0;PAIREDR=0;PAO=0,3;PQA=0,104;PQR=0;PRO=0;QA=184926,57381;QR=107;RO=3;RPL=5196,1643;RPP=11182.2,3557.73;RPPR=9.52472;RPR=16,2;RUN=1,1;SAF=5212,1645;SAP=11320.7,3575.08;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44,0:0:0:44,0:1580,0:-142.434,-13.2453,0,-142.434,-13.2453,-142.434	1/2:47:0,35,12:0:0:35,12:1251,424:-136.71,-34.7208,-24.1848,-102.342,0,-98.7295	1/1:151:0,149,0:0:0:149,0:5247,0:-471.906,-44.8535,0,-471.906,-44.8535,-471.906	1/1:142:0,142,0:0:0:142,0:5079,0:-457.24,-42.7463,0,-457.24,-42.7463,-457.24	1/2:38:0,19,19:0:0:19,19:652,662:-106.353,-53.4238,-47.7042,-53.2722,0,-47.5526	1/2:23:0,7,16:0:0:7,16:252,566:-66.8417,-46.2857,-44.1785,-20.9135,0,-16.097	1/2:73:0,36,37:0:0:36,37:1275,1247:-205.179,-101.311,-90.4742,-104.213,0,-93.0747	1/1:108:0,108,0:0:0:108,0:3790,0:-341.239,-32.5112,0,-341.239,-32.5112,-341.239	1/1:80:0,80,0:0:0:80,0:2809,0:-253.024,-24.0824,0,-253.024,-24.0824,-253.024	1/1:55:0,52,1:0:0:52,1:1856,36:-166.958,-15.6536,0,-164.023,-12.7185,-163.722	1/1:49:0,49,0:0:0:49,0:1756,0:-158.312,-14.7505,0,-158.312,-14.7505,-158.312	1/1:91:0,91,0:0:0:91,0:3185,0:-286.543,-27.3937,0,-286.543,-27.3937,-286.543	1/2:68:0,39,29:0:0:39,29:1391,1012:-195.828,-82.4394,-70.6993,-113.74,0,-105.01	1/2:43:0,19,24:0:0:19,24:676,848:-123.564,-68.4683,-62.7487,-55.4484,0,-48.2237	1/2:63:0,23,40:0:0:23,40:800,1416:-180.616,-115.574,-108.65,-65.3921,0,-53.3509	1/1:52:0,52,0:0:0:52,0:1842,0:-166.03,-15.6536,0,-166.03,-15.6536,-166.03	1/1:35:0,35,0:0:0:35,0:1243,0:-112.158,-10.5361,0,-112.158,-10.5361,-112.158	1/2:20:0,11,7:0:0:11,7:388,236:-50.6717,-19.0712,-15.7599,-31.5946,0,-29.4874	1/2:23:0,7,16:0:0:7,16:244,562:-65.8011,-45.9661,-43.8589,-20.1839,0,-15.3675	1/2:171:0,79,89:0:0:79,89:2823,3120:-483.568,-253.406,-229.625,-230.173,0,-203.382	1/2:95:0,58,37:0:0:58,37:2054,1303:-272.698,-105.491,-88.0314,-167.557,0,-156.419	1/2:53:0,18,35:0:0:18,35:644,1206:-150.777,-98.2584,-92.8399,-52.8717,0,-42.3356	1/1:145:0,145,0:0:0:145,0:5199,0:-467.994,-43.6494,0,-467.994,-43.6494,-467.994	1/1:42:0,39,2:0:0:39,2:1377,71:-123.786,-11.7402,0,-118.052,-5.91155,-117.45	1/1:43:0,43,0:0:0:43,0:1508,0:-135.907,-12.9443,0,-135.907,-12.9443,-135.907	1/2:221:0,102,119:0:0:102,119:3636,4184:-636.921,-340.541,-309.836,-296.734,0,-260.911	1/1:165:0,161,0:0:0:161,0:5692,0:-511.62,-48.4658,0,-511.62,-48.4658,-511.62	1/1:38:0,37,0:0:0:37,0:1316,0:-118.46,-11.1381,0,-118.46,-11.1381,-118.46	1/2:217:0,111,106:0:0:111,106:3937,3712:-622.336,-301.66,-268.245,-321.028,0,-289.119	1/1:48:0,46,2:0:0:46,2:1638,72:-147.228,-13.8474,0,-141.41,-7.6725,-140.808	1/1:79:0,79,0:0:0:79,0:2795,0:-251.409,-23.7814,0,-251.409,-23.7814,-251.409	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:7:0,2,5:0:0:2,5:72,173:-20.0654,-14.1852,-13.5832,-6.23466,0,-4.72951	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:224:0,104,118:0:0:104,118:3707,4089:-633.882,-331.773,-300.465,-302.101,0,-266.58	1/1:142:0,141,0:0:0:141,0:5027,0:-452.053,-42.4452,0,-452.053,-42.4452,-452.053	1/2:39:0,24,15:0:0:24,15:856,518:-112.09,-42.3028,-35.078,-70.1364,0,-65.6209	.:.:.:.:.:.:.:.	1/2:61:0,31,30:0:0:31,30:1099,1065:-175.31,-85.7747,-76.4427,-89.8875,0,-80.8566	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:132:0,132,0:0:0:132,0:4698,0:-422.977,-39.736,0,-422.977,-39.736,-422.977	1/1:58:0,57,0:0:0:57,0:2032,0:-182.778,-17.1587,0,-182.778,-17.1587,-182.778	1/1:52:0,52,0:0:0:52,0:1839,0:-165.783,-15.6536,0,-165.783,-15.6536,-165.783	1/1:86:0,85,0:0:0:85,0:3011,0:-270.858,-25.5876,0,-270.858,-25.5876,-270.858	1/1:54:0,54,0:0:0:54,0:1918,0:-172.309,-16.2556,0,-172.309,-16.2556,-172.309	1/2:160:0,85,74:0:0:85,74:3005,2599:-455.14,-210.559,-184.972,-244.577,0,-222.301	1/2:99:0,51,48:0:0:51,48:1818,1689:-285.711,-137.529,-122.176,-148.536,0,-134.086	1/2:62:0,38,24:0:0:38,24:1349,844:-178.831,-68.9194,-57.4802,-110.264,0,-103.04	1/2:175:0,104,71:0:0:104,71:3695,2450:-499.859,-199.084,-167.777,-301.124,0,-279.751	1/1:10:0,10,0:0:0:10,0:356,0:-32.3756,-3.0103,0,-32.3756,-3.0103,-32.3756	1/1:104:0,103,0:0:0:103,0:3657,0:-329.06,-31.0061,0,-329.06,-31.0061,-329.06	1/1:53:1,52,0:1:36:52,0:1830,0:-161.378,-12.3563,0,-161.679,-15.6536,-164.616	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:44:0,44,0:0:0:44,0:1568,0:-141.411,-13.2453,0,-141.411,-13.2453,-141.411	1/1:36:0,36,0:0:0:36,0:1288,0:-116.219,-10.8371,0,-116.219,-10.8371,-116.219	1/1:6:0,6,0:0:0:6,0:201,0:-18.4168,-1.80618,0,-18.4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chr01	28991201	.	G	A	107073	PASS	AB=0.476157;ABP=16.8861;AC=150;AF=0.797872;AN=188;AO=5125;CIGAR=1X;DP=6615;DPB=6615;DPRA=0;EPP=11123.1;EPPR=3234.16;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.968;MQMR=59.9906;NS=94;NUMALT=1;ODDS=0.127174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180573;QR=52247;RO=1488;RPL=2;RPP=11114.4;RPPR=3234.16;RPR=5123;RUN=1;SAF=1;SAP=11123.1;SAR=5124;SRF=0;SRP=3234.16;SRR=1488;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1272:-114.747,-10.8371,0	0/1:53:24,29:24:841:29:1020:-76.1548,0,-60.0518	1/1:75:1,74:1:36:74:2605:-230.398,-18.979,0	1/1:263:1,262:1:32:262:9254:-829.638,-75.9716,0	0/1:14:8,6:8:288:6:207:-14.7525,0,-22.053	0/1:46:27,19:27:960:19:667:-46.5072,0,-72.8689	0/1:53:22,31:22:784:31:1099:-83.2649,0,-54.9293	1/1:86:0,86:0:0:86:3062:-275.809,-25.8886,0	1/1:109:0,109:0:0:109:3872:-348.677,-32.8123,0	1/1:101:0,101:0:0:101:3535:-318.362,-30.404,0	1/1:47:0,47:0:0:47:1635:-147.437,-14.1484,0	1/1:102:0,102:0:0:102:3535:-318.364,-30.7051,0	0/1:62:31,31:31:1090:31:1077:-78.5675,0,-79.744	0/1:71:45,26:45:1590:26:916:-61.3833,0,-122.016	0/1:70:38,32:38:1273:32:1119:-79.9447,0,-93.7885	1/1:60:0,60:0:0:60:2104:-189.627,-18.0618,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:32:16,16:16:572:16:567:-41.7278,0,-42.1805	0/1:30:19,11:19:672:11:379:-25.4097,0,-51.7759	0/1:56:30,26:30:1040:26:911:-65.4464,0,-77.0489	0/1:89:42,47:42:1481:47:1675:-124.244,0,-106.791	0/1:22:19,3:19:676:3:99:-2.61392,0,-54.5453	1/1:96:2,94:2:72:94:3339:-293.892,-22.0622,0	1/1:39:3,36:3:104:36:1271:-104.989,-2.03736,0	1/1:46:0,46:0:0:46:1634:-147.347,-13.8474,0	0/1:192:99,93:99:3501:93:3279:-237.531,0,-257.504	1/1:158:0,158:0:0:158:5541:-498.824,-47.5627,0	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	0/1:200:87,113:87:3068:113:4013:-301.154,0,-216.143	1/1:89:1,88:1:36:88:3151:-280.216,-23.1934,0	1/1:130:1,129:1:36:129:4539:-405.079,-35.5356,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:14:11,3:11:392:3:89:-4.08994,0,-31.4056	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:12:0,12:0:0:12:408:-37.0441,-3.61236,0	0/1:166:73,93:73:2551:93:3214:-239.512,0,-179.869	1/1:78:0,78:0:0:78:2742:-247.021,-23.4803,0	0/1:46:27,19:27:935:19:656:-45.5148,0,-70.612	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:54:31,23:31:1091:23:806:-56.6026,0,-82.2431	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:74:0,74:0:0:74:2599:-234.158,-22.2762,0	1/1:68:0,68:0:0:68:2361:-212.747,-20.47,0	1/1:61:1,60:1:36:60:2104:-186.029,-14.7646,0	1/1:59:0,59:0:0:59:2063:-185.938,-17.7608,0	1/1:78:0,78:0:0:78:2765:-249.091,-23.4803,0	0/1:167:92,75:92:3249:75:2672:-190.454,0,-242.361	0/1:62:35,27:35:1243:27:959:-67.9615,0,-93.51	0/1:104:47,57:47:1676:57:2022:-150.944,0,-119.82	0/1:21:10,11:10:347:11:387:-28.8443,0,-25.242	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:85:1,84:1:36:84:2978:-264.655,-21.9893,0	1/1:50:1,49:1:36:49:1722:-151.665,-11.4532,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:138:0,138:0:0:138:4858:-437.343,-41.5421,0	1/1:33:0,33:0:0:33:1168:-105.427,-9.93399,0	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	0/1:12:4,8:4:144:8:275:-21.4711,0,-9.70126	1/1:72:0,72:0:0:72:2545:-229.278,-21.6742,0	1/1:91:3,88:3:108:88:3110:-270.04,-17.3186,0	1/1:10:0,10:0:0:10:348:-31.6546,-3.0103,0	1/1:126:0,126:0:0:126:4421:-398.064,-37.9298,0	0/1:119:65,54:65:2267:54:1931:-138.243,0,-168.466	1/1:37:0,37:0:0:37:1303:-117.571,-11.1381,0	1/1:41:0,41:0:0:41:1445:-130.344,-12.3422,0	1/1:100:2,98:2:72:98:3461:-304.793,-23.2663,0	0/1:75:47,28:47:1654:28:987:-66.5658,0,-126.569	1/1:45:1,44:1:36:44:1534:-134.752,-9.94808,0	1/1:34:0,34:0:0:34:1202:-108.486,-10.235,0	1/1:33:0,33:0:0:33:1152:-103.983,-9.93399,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:95:49,46:49:1733:46:1613:-116.859,0,-127.655	0/1:75:27,48:27:963:48:1699:-130.618,0,-64.4087	1/1:327:0,327:0:0:327:11458:-1031.06,-98.4368,0	1/1:135:0,135:0:0:135:4819:-433.866,-40.6391,0	0/1:75:42,33:42:1487:33:1168:-82.85,0,-111.511	1/1:79:0,79:0:0:79:2796:-251.88,-23.7814,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:71:26,45:26:905:45:1612:-123.997,0,-60.3897	0/1:64:34,30:34:1190:30:1056:-76.085,0,-88.1376	0/1:134:72,61:72:2497:61:2153:-153.787,0,-184.733	0/1:55:27,28:27:959:28:995:-73.3074,0,-70.0687	0/1:40:24,15:24:856:15:528:-35.7519,0,-65.2612	1/1:49:0,49:0:0:49:1731:-156.074,-14.7505,0	0/1:143:79,64:79:2743:64:2274:-161.875,0,-204.062	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.4848	1/1:76:0,76:0:0:76:2659:-239.557,-22.8783,0	1/1:77:0,77:0:0:77:2634:-237.307,-23.1793,0	0/1:29:19,10:19:663:10:352:-23.2883,0,-51.2636	0/1:101:60,41:60:2064:41:1409:-96.6992,0,-155.623	0/1:80:54,26:54:1878:26:928:-59.7559,0,-145.215	1/1:45:0,45:0:0:45:1597:-144.016,-13.5464,0	1/1:68:0,68:0:0:68:2402:-216.437,-20.47,0
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chr01	29373295	.	A	G	4968.78	PASS	AB=0.542056;ABP=19.4485;AC=42;AF=0.228261;AN=184;AO=581;CIGAR=1X;DP=2297;DPB=2297;DPRA=1.0148;EPP=1264.64;EPPR=3729.26;GTI=0;LEN=1;MEANALT=1;MQM=27.5439;MQMR=29.088;NS=92;NUMALT=1;ODDS=1.62371;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20804;QR=61389;RO=1716;RPL=581;RPP=1264.64;RPPR=3729.26;RPR=0;RUN=1;SAF=0;SAP=1264.64;SAR=581;SRF=0;SRP=3729.26;SRR=1716;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:572:0:0:0,-4.81648,-38.094	0/0:45:45,0:45:1601:0:0:0,-13.5463,-106.795	0/1:46:16,30:16:561:30:1076:-54.9733,0,-23.7881	0/0:37:37,0:37:1316:0:0:0,-11.1381,-95.8002	0/1:14:7,7:7:252:7:252:-13.135,0,-14.3633	0/1:11:4,7:4:144:7:252:-13.0644,0,-6.48849	0/1:33:11,22:11:396:22:788:-44.4427,0,-18.9422	0/0:49:49,0:49:1756:0:0:0,-14.7505,-115.617	0/0:18:18,0:18:633:0:0:0,-5.41854,-39.9696	0/0:21:21,0:21:752:0:0:0,-6.32163,-55.0484	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.1995	0/1:8:3,5:3:108:5:180:-9.27735,0,-5.00784	0/0:8:8,0:8:288:0:0:0,-2.40824,-19.0838	0/1:9:5,4:5:180:4:144:-7.41468,0,-10.6434	0/1:9:6,3:6:216:3:104:-4.71032,0,-13.2559	0/1:7:4,3:4:144:3:108:-5.55416,0,-8.63302	0/0:12:12,0:12:424:0:0:0,-3.61236,-28.9541	0/0:7:7,0:7:252:0:0:0,-2.10721,-16.951	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.6486	0/1:59:20,39:20:712:39:1404:-79.1714,0,-34.571	0/0:19:19,0:19:676:0:0:0,-5.71957,-49.7193	0/0:51:51,0:51:1836:0:0:0,-15.3525,-132.454	0/0:38:38,0:38:1368:0:0:0,-11.4391,-97.5359	0/0:47:47,0:47:1677:0:0:0,-14.1484,-119.121	0/0:35:35,0:35:1260:0:0:0,-10.536,-89.4713	0/0:75:75,0:75:2681:0:0:0,-22.5772,-195.179	0/0:42:42,0:42:1512:0:0:0,-12.6433,-109.332	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.7402	0/1:64:28,36:28:1008:36:1284:-69.6041,0,-54.174	0/1:56:34,22:34:1224:22:792:-37.0318,0,-71.5687	0/1:62:37,25:37:1324:25:892:-42.706,0,-77.6873	0/0:5:5,0:5:176:0:0:0,-1.50515,-13.2469	0/0:9:9,0:9:324:0:0:0,-2.70927,-23.4193	0/0:7:7,0:7:252:0:0:0,-2.10721,-16.8668	0/1:2:1,1:1:36:1:36:-1.95665,0,-1.95665	0/1:5:2,3:2:72:3:108:-5.65923,0,-3.52719	0/1:28:13,15:13:464:15:540:-28.7835,0,-25.2559	0/1:71:20,51:20:720:51:1832:-104.019,0,-30.9369	0/0:14:14,0:14:504:0:0:0,-4.21442,-33.6372	.:.:.:.:.:.:.:.	0/0:30:30,0:30:1061:0:0:0,-9.0309,-76.4121	0/0:6:6,0:6:216:0:0:0,-1.80618,-15.7322	0/1:48:24,24:24:845:24:856:-44.3205,0,-46.6739	0/1:4:1,3:1:36:3:108:-6.29158,0,-1.69864	0/1:9:1,8:1:32:8:288:-17.265,0,-0.0784555	0/0:61:61,0:61:2188:0:0:0,-18.3628,-159.144	0/1:31:15,16:15:525:16:576:-27.6015,0,-26.0225	0/0:42:42,0:42:1508:0:0:0,-12.6433,-107.864	0/1:44:29,15:29:1040:15:540:-23.8876,0,-62.5527	0/0:23:23,0:23:824:0:0:0,-6.92369,-59.8216	0/1:78:39,39:39:1396:39:1404:-73.7624,0,-78.2599	.:.:.:.:.:.:.:.	0/0:55:55,0:55:1976:0:0:0,-16.5566,-131.233	0/0:16:16,0:16:572:0:0:0,-4.81648,-41.9858	0/1:8:2,6:2:72:6:216:-11.6646,0,-2.6241	0/1:14:4,10:4:140:10:360:-20.5235,0,-5.67471	0/0:23:23,0:23:820:0:0:0,-6.92369,-60.1694	0/1:4:2,2:2:72:2:68:-3.91719,0,-4.31113	0/1:6:3,3:3:108:3:108:-5.85519,0,-6.32156	0/0:12:11,1:11:381:1:36:0,-0.876158,-25.2124	0/0:26:26,0:26:936:0:0:0,-7.82678,-67.84	0/0:7:7,0:7:252:0:0:0,-2.10721,-18.649	0/0:28:28,0:28:1004:0:0:0,-8.42884,-73.1855	0/1:66:31,35:31:1097:35:1246:-65.5537,0,-60.0829	0/1:14:6,8:6:216:8:288:-15.4359,0,-11.5981	0/0:8:8,0:8:284:0:0:0,-2.40824,-21.0852	0/1:50:26,24:26:932:24:845:-43.2002,0,-53.0595	0/0:26:26,0:26:921:0:0:0,-7.82678,-67.2135	0/1:4:2,2:2:72:2:72:-3.99466,0,-4.31113	0/1:22:7,15:7:252:15:540:-28.0079,0,-10.3284	0/1:19:6,13:6:216:13:468:-26.5676,0,-10.1708	0/0:7:7,0:7:252:0:0:0,-2.10721,-18.5777	0/0:32:32,0:32:1148:0:0:0,-9.63296,-76.4834	0/1:13:6,7:6:216:7:252:-12.2065,0,-10.6539	0/0:49:49,0:49:1745:0:0:0,-14.7505,-126.44	0/0:37:37,0:37:1332:0:0:0,-11.1381,-95.8891	0/1:51:28,23:28:1004:23:812:-37.1823,0,-51.5233	0/1:19:4,15:4:144:15:529:-28.7054,0,-4.31535	0/0:7:7,0:7:252:0:0:0,-2.10721,-16.951	0/0:25:25,0:25:892:0:0:0,-7.52575,-64.4754	0/1:18:12,6:12:428:6:212:-8.60319,0,-23.375	0/0:73:73,0:73:2620:0:0:0,-21.9752,-188.527	0/0:23:23,0:23:828:0:0:0,-6.92369,-60.153	0/0:8:8,0:8:288:0:0:0,-2.40824,-21.1902	0/0:10:10,0:10:356:0:0:0,-3.0103,-26.3814	0/1:21:11,10:11:396:10:360:-18.5778,0,-22.706	0/1:10:3,7:3:108:7:252:-13.3654,0,-4.40578	0/1:12:7,5:7:252:5:180:-8.15769,0,-13.3366	0/0:9:9,0:9:309:0:0:0,-2.70927,-21.0902	0/1:5:2,3:2:72:3:108:-6.07445,0,-4.0101	0/1:6:4,2:4:144:2:72:-3.3926,0,-8.69895	0/1:10:4,6:4:144:6:216:-10.6291,0,-7.72993	0/0:9:9,0:9:324:0:0:0,-2.70927,-23.6509	0/0:10:10,0:10:360:0:0:0,-3.0103,-26.0185
chr01	29531782	.	T	C	2719.63	PASS	AB=0.542505;ABP=37.345;AC=38;AF=0.202128;AN=188;AO=1195;CIGAR=1X;DP=4610;DPB=4610;DPRA=1.40773;EPP=2597.92;EPPR=7303.93;GTI=3;LEN=1;MEANALT=1.02326;MQM=19.4996;MQMR=30.9385;NS=94;NUMALT=1;ODDS=0.0898083;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42434;QR=122526;RO=3414;RPL=1195;RPP=2597.92;RPPR=7303.93;RPR=0;RUN=1;SAF=0;SAP=2597.92;SAR=1195;SRF=0;SRP=7416.42;SRR=3414;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1080:0:0:0,-9.0309,-84.7225	0/1:41:12,29:12:428:29:1023:-42.5287,0,-21.5443	0/0:67:67,0:67:2412:0:0:0,-20.169,-188.365	0/0:99:99,0:99:3556:0:0:0,-29.802,-258.976	0/1:29:10,19:10:360:19:671:-23.7436,0,-17.4038	0/1:27:9,18:9:324:18:648:-25.8835,0,-17.486	0/1:43:22,21:22:792:21:748:-22.9721,0,-44.521	0/0:67:67,0:67:2396:0:0:0,-20.169,-186.727	0/0:78:78,0:78:2796:0:0:0,-23.4803,-216.882	0/0:59:59,0:59:2116:0:0:0,-17.7608,-154.152	0/0:13:13,0:13:468:0:0:0,-3.91339,-32.6754	0/0:55:55,0:55:1972:0:0:0,-16.5566,-152.82	0/1:40:17,23:17:612:23:819:-31.2845,0,-35.5265	0/1:29:15,14:15:540:14:500:-15.6287,0,-32.469	0/1:45:18,27:18:648:27:964:-32.9369,0,-33.8393	0/0:37:36,1:36:1296:1:36:0,-9.24658,-94.0524	0/0:16:16,0:16:572:0:0:0,-4.81648,-45.132	0/1:14:7,7:7:252:7:252:-9.13972,0,-14.6504	0/1:9:5,4:5:180:4:144:-5.27652,0,-11.6595	0/1:59:24,35:24:860:35:1248:-43.0166,0,-45.5238	0/1:119:60,59:60:2152:59:2099:-65.0383,0,-120.8	0/1:33:16,17:16:576:17:595:-19.1233,0,-32.1561	0/0:54:53,1:53:1904:1:36:0,-14.3641,-137.728	0/0:13:13,0:13:468:0:0:0,-3.91339,-35.3026	0/0:57:57,0:57:2044:0:0:0,-17.1587,-150.195	0/1:165:89,76:89:3180:76:2719:-80.0036,0,-181.233	0/0:94:94,0:94:3376:0:0:0,-28.2968,-252.139	0/0:13:13,0:13:468:0:0:0,-3.91339,-34.3612	0/1:93:33,60:33:1188:60:2131:-74.2302,0,-56.8564	0/0:72:71,1:71:2529:1:36:0,-19.7826,-183.109	0/0:78:78,0:78:2795:0:0:0,-23.4803,-204.387	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.66343	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.0212	0/1:7:1,6:1:36:6:216:-9.63204,0,-1.01643	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.3687	0/0:9:9,0:9:320:0:0:0,-2.70927,-25.7775	0/1:96:51,45:51:1828:45:1607:-48.3645,0,-104.451	0/0:57:57,0:57:2048:0:0:0,-17.1587,-152.637	0/1:21:9,12:9:324:12:432:-16.5099,0,-19.5655	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.34611	0/1:49:16,33:16:576:33:1176:-41.9354,0,-27.4833	0/0:13:13,0:13:468:0:0:0,-3.91339,-35.3026	0/0:69:69,0:69:2463:0:0:0,-20.7711,-185.256	0/0:26:26,0:26:928:0:0:0,-7.82678,-68.0775	0/0:28:28,0:28:1008:0:0:0,-8.42884,-72.9432	0/0:95:95,0:95:3416:0:0:0,-28.5978,-242.373	0/0:78:78,0:78:2800:0:0:0,-23.4803,-213.818	0/1:98:46,52:46:1652:52:1842:-59.514,0,-91.1239	0/1:58:26,32:26:932:32:1128:-37.49,0,-48.3122	0/1:58:18,40:18:648:40:1431:-50.9511,0,-30.365	0/1:51:20,31:20:720:31:1103:-37.9849,0,-37.1875	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.8124	0/0:85:85,0:85:3048:0:0:0,-25.5875,-238.056	0/0:41:41,0:41:1468:0:0:0,-12.3422,-105.706	0/0:10:10,0:10:360:0:0:0,-3.0103,-28.6276	0/0:61:61,0:61:2192:0:0:0,-18.3628,-161.359	0/0:7:7,0:7:252:0:0:0,-2.10721,-18.5777	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.7606	0/1:10:7,3:7:252:3:104:-2.70114,0,-15.5674	0/0:38:38,0:38:1364:0:0:0,-11.4391,-101.264	0/0:53:53,0:53:1908:0:0:0,-15.9546,-139.317	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.3527	0/0:116:116,0:116:4168:0:0:0,-34.9195,-300.939	0/1:120:63,57:63:2256:57:2031:-61.6826,0,-128.42	0/0:40:40,0:40:1440:0:0:0,-12.0412,-110.407	0/0:46:46,0:46:1656:0:0:0,-13.8474,-119.558	0/0:98:98,0:98:3520:0:0:0,-29.5009,-257.046	0/1:92:27,65:27:968:65:2316:-83.0811,0,-43.0287	0/0:6:6,0:6:216:0:0:0,-1.80618,-16.3941	0/0:32:32,0:32:1148:0:0:0,-9.63296,-88.2975	0/0:17:17,0:17:612:0:0:0,-5.11751,-44.7026	0/0:11:11,0:11:396:0:0:0,-3.31133,-29.3879	0/1:108:61,47:61:2196:47:1653:-56.7173,0,-137.54	0/1:51:21,30:21:748:30:1068:-41.141,0,-43.4259	0/0:69:69,0:69:2480:0:0:0,-20.7711,-185.826	0/0:79:78,1:78:2800:1:36:0,-21.8898,-201.37	0/1:63:34,29:34:1212:29:1019:-36.3249,0,-76.6586	0/0:72:68,4:68:2436:4:144:0,-13.9538,-181.272	0/0:3:3,0:3:104:0:0:0,-0.90309,-8.81682	0/1:72:23,49:23:828:49:1732:-61.8411,0,-40.3255	0/1:50:23,27:23:824:27:956:-36.0499,0,-49.6305	0/1:200:107,92:107:3848:92:3236:-97.3628,0,-218.057	0/1:36:17,19:17:612:19:660:-21.465,0,-33.2075	0/1:41:18,23:18:648:23:820:-26.9789,0,-34.2411	0/0:29:29,0:29:1031:0:0:0,-8.72987,-75.9556	0/1:75:35,40:35:1256:40:1415:-45.7884,0,-69.0677	0/1:16:12,4:12:432:4:144:-2.90388,0,-28.2892	0/0:39:39,0:39:1404:0:0:0,-11.7402,-108.339	0/0:28:28,0:28:1008:0:0:0,-8.42884,-78.609	0/1:11:6,5:6:216:5:176:-5.37819,0,-13.0828	0/1:31:13,18:13:464:18:644:-21.6653,0,-24.7302	0/1:28:9,19:9:324:19:676:-24.2594,0,-15.3738	0/0:86:86,0:86:3080:0:0:0,-25.8886,-219.775	0/0:51:51,0:51:1836:0:0:0,-15.3525,-132.43
chr01	29531792	.	G	C	2756.81	PASS	AB=0.543916;ABP=39.6293;AC=38;AF=0.202128;AN=188;AO=1195;CIGAR=1X;DP=4577;DPB=4577;DPRA=1.39791;EPP=2597.92;EPPR=7338.24;GTI=4;LEN=1;MEANALT=1.07317;MQM=19.5088;MQMR=30.9426;NS=94;NUMALT=1;ODDS=0.204121;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42665;QR=120289;RO=3378;RPL=1195;RPP=2597.92;RPPR=7338.24;RPR=0;RUN=1;SAF=0;SAP=2597.92;SAR=1195;SRF=0;SRP=7338.24;SRR=3378;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:1000:0:0:0,-8.42884,-78.8181	0/1:40:11,29:11:379:29:1036:-42.9385,0,-18.3992	0/0:63:63,0:63:2248:0:0:0,-18.9649,-176.12	0/0:96:96,0:96:3428:0:0:0,-28.8989,-250.515	0/1:29:10,19:10:360:19:680:-23.7931,0,-17.4038	0/1:29:10,19:10:356:19:676:-27.124,0,-19.5338	0/1:44:22,22:22:784:22:780:-24.3621,0,-44.0119	0/0:66:66,0:66:2359:0:0:0,-19.868,-183.95	0/0:79:79,0:79:2805:0:0:0,-23.7814,-218.122	0/0:58:58,0:58:2058:0:0:0,-17.4597,-150.846	0/0:13:13,0:13:459:0:0:0,-3.91339,-32.6258	0/0:53:53,0:53:1865:0:0:0,-15.9546,-145.782	0/1:42:17,25:17:612:25:896:-34.4959,0,-34.9244	0/1:29:15,14:15:528:14:500:-15.6287,0,-32.0642	0/1:45:17,28:17:608:28:1000:-34.6392,0,-31.1227	0/0:37:36,0:36:1280:0:0:0,-10.8371,-95.3605	0/0:15:15,0:15:536:0:0:0,-4.51545,-42.3206	0/1:14:7,7:7:252:7:252:-9.13972,0,-14.6504	0/1:9:5,4:5:176:4:140:-5.24212,0,-11.4962	0/1:63:25,38:25:891:38:1356:-46.9193,0,-46.7215	0/1:119:60,59:60:2144:59:2108:-65.107,0,-120.427	0/1:33:16,17:16:572:17:608:-19.1842,0,-32.0518	0/0:52:51,1:51:1816:1:36:0,-13.762,-131.414	0/0:13:13,0:13:460:0:0:0,-3.91339,-35.0194	0/0:56:56,0:56:1988:0:0:0,-16.8577,-146.847	0/1:164:89,75:89:3164:75:2680:-78.6178,0,-181.322	0/0:93:93,0:93:3312:0:0:0,-27.9958,-248.193	0/0:13:13,0:13:468:0:0:0,-3.91339,-34.3612	0/1:92:33,59:33:1171:59:2120:-72.9232,0,-56.6075	0/0:72:71,1:71:2528:1:36:0,-19.7826,-183.435	0/0:78:78,0:78:2792:0:0:0,-23.4803,-204.347	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.66343	0/0:4:4,0:4:140:0:0:0,-1.20412,-9.89684	0/1:7:1,6:1:36:6:216:-9.63204,0,-1.01643	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.3687	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.2086	0/1:96:50,46:50:1792:46:1640:-50.9946,0,-102.157	0/0:59:59,0:59:2112:0:0:0,-17.7608,-157.94	0/1:21:9,12:9:324:12:432:-16.5099,0,-19.5655	0/0:3:3,0:3:104:0:0:0,-0.90309,-8.22057	0/1:49:17,32:17:608:32:1148:-40.2557,0,-30.0446	0/0:13:13,0:13:460:0:0:0,-3.91339,-35.0584	0/0:69:69,0:69:2440:0:0:0,-20.7711,-184.635	0/0:26:26,0:26:911:0:0:0,-7.82678,-67.4845	0/0:28:28,0:28:1008:0:0:0,-8.42884,-72.9432	0/0:92:92,0:92:3279:0:0:0,-27.6948,-234.237	0/0:80:80,0:80:2827:0:0:0,-24.0824,-217.843	0/1:101:47,54:47:1670:54:1919:-62.3807,0,-91.3883	0/1:56:25,30:25:896:30:1064:-34.6456,0,-47.3414	0/1:56:17,39:17:604:39:1387:-49.8024,0,-28.1287	0/1:51:20,31:20:691:31:1112:-38.0343,0,-36.324	0/0:4:4,0:4:135:0:0:0,-1.20412,-10.4619	0/0:84:84,0:84:3007:0:0:0,-25.2865,-234.793	0/0:42:42,0:42:1499:0:0:0,-12.6433,-107.995	0/0:10:10,0:10:360:0:0:0,-3.0103,-28.6276	0/0:61:61,0:61:2179:0:0:0,-18.3628,-160.76	0/0:7:7,0:7:252:0:0:0,-2.10721,-18.5777	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.7606	0/1:9:7,2:7:243:2:72:-0.884631,0,-15.522	0/0:37:37,0:37:1324:0:0:0,-11.1381,-98.46	0/0:52:52,0:52:1860:0:0:0,-15.6536,-135.854	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.3527	0/0:114:114,0:114:4074:0:0:0,-34.3174,-295.931	0/1:120:63,57:63:2243:57:2044:-61.7731,0,-127.985	0/0:40:40,0:40:1436:0:0:0,-12.0412,-111.037	0/0:46:46,0:46:1639:0:0:0,-13.8474,-119.248	0/0:97:97,0:97:3463:0:0:0,-29.1999,-253.847	0/1:94:27,67:27:964:67:2375:-85.8232,0,-42.3227	0/0:6:6,0:6:216:0:0:0,-1.80618,-16.3941	0/0:31:31,0:31:1107:0:0:0,-9.33193,-85.5711	0/0:17:17,0:17:604:0:0:0,-5.11751,-44.4941	0/0:11:11,0:11:383:0:0:0,-3.31133,-28.692	0/1:108:62,46:62:2216:46:1652:-55.084,0,-140.055	0/1:53:21,32:21:752:32:1130:-44.4389,0,-42.9844	0/0:69:69,0:69:2464:0:0:0,-20.7711,-185.341	0/0:78:78,0:78:2796:0:0:0,-23.4803,-202.247	0/1:62:33,29:33:1184:29:1035:-36.6965,0,-74.5294	0/0:68:64,4:64:2271:4:144:0,-12.7497,-168.607	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.18918	0/1:70:21,49:21:739:49:1756:-62.5108,0,-34.9333	0/1:50:24,26:24:847:26:932:-34.2249,0,-51.8493	0/1:197:104,92:104:3703:92:3283:-98.2985,0,-211.447	0/1:37:16,20:16:576:20:712:-23.1918,0,-31.3199	0/1:42:19,23:19:676:23:824:-26.6892,0,-36.4373	0/0:29:29,0:29:1008:0:0:0,-8.72987,-75.0241	0/1:72:34,38:34:1194:38:1360:-43.1826,0,-66.2794	0/1:16:12,4:12:424:4:136:-2.86776,0,-27.9669	0/0:38:38,0:38:1340:0:0:0,-11.4391,-104.676	0/0:27:27,0:27:963:0:0:0,-8.12781,-75.327	0/1:11:6,5:6:212:5:176:-5.37819,0,-12.9595	0/1:29:13,16:13:464:16:576:-18.6973,0,-25.443	0/1:27:9,18:9:316:18:636:-22.8404,0,-15.4652	0/0:85:85,0:85:3019:0:0:0,-25.5875,-216.267	0/0:51:51,0:51:1828:0:0:0,-15.3525,-132.223
chr01	29531796	.	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chr01	29611887	.	C	A	17657.1	PASS	AB=0.53878;ABP=28.273;AC=41;AF=0.222826;AN=184;AO=1044;CIGAR=1X;DP=3879;DPB=3879;DPRA=1.32674;EPP=2270.03;EPPR=6159.13;GTI=3;LEN=1;MEANALT=1;MQM=57.2452;MQMR=59.9369;NS=92;NUMALT=1;ODDS=0.159553;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37301;QR=100759;RO=2835;RPL=0;RPP=2270.03;RPPR=6159.13;RPR=1044;RUN=1;SAF=0;SAP=2270.03;SAR=1044;SRF=0;SRP=6159.13;SRR=2835;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0178	0/1:65:31,34:31:1104:34:1219:-90.3249,0,-80.1037	0/0:62:62,0:62:2198:0:0:0,-18.6639,-198.082	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.455	0/1:21:7,14:7:237:14:504:-39.3481,0,-15.3374	0/1:24:8,16:8:288:16:566:-44.0161,0,-19.0427	0/1:71:26,45:26:921:45:1605:-122.973,0,-61.8321	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5424	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:40:24,16:24:841:16:576:-40.0501,0,-63.9652	0/1:41:20,21:20:697:21:756:-55.994,0,-50.7084	0/1:24:11,13:11:396:13:468:-35.2231,0,-28.758	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:20:7,13:7:228:13:464:-35.9939,0,-14.817	0/1:18:9,9:9:320:9:324:-24.0549,0,-23.7238	0/1:74:39,35:39:1400:35:1260:-91.0106,0,-104.023	0/1:44:24,20:24:864:20:720:-51.8547,0,-64.8372	0/1:58:22,36:22:784:36:1288:-98.6476,0,-53.4242	0/0:47:47,0:47:1660:0:0:0,-14.1484,-149.685	0/1:30:27,3:27:952:3:108:-1.03948,0,-76.9637	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:134:72,62:72:2573:62:2232:-160.751,0,-191.48	0/0:74:74,0:74:2606:0:0:0,-22.2762,-234.762	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:97:44,53:44:1567:53:1895:-141.567,0,-111.781	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:5:3,2:3:108:2:72:-5.32966,0,-8.57002	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:79:37,42:37:1298:42:1474:-109.124,0,-93.3358	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.835	0/1:30:15,15:15:540:15:531:-39.0754,0,-39.9056	1/1:1:0,1:0:0:1:36:-3.59656,-0.30103,0	0/1:63:31,32:31:1074:32:1144:-84.1895,0,-77.9697	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/0:22:22,0:22:734:0:0:0,-6.62266,-66.3689	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:79:44,35:44:1580:35:1260:-89.8836,0,-118.702	0/1:55:13,42:13:468:42:1504:-119.034,0,-25.903	0/1:80:35,45:35:1256:45:1620:-121.963,0,-89.2629	0/1:76:40,36:40:1421:36:1292:-93.5994,0,-105.307	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.706	0/0:5:5,0:5:156:0:0:0,-1.50515,-14.347	0/0:62:62,0:62:2170:0:0:0,-18.6639,-195.561	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:1,3:1:36:3:108:-8.86675,0,-2.39415	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.53	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.391	0/1:55:22,33:22:792:33:1179:-89.7767,0,-55.049	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:41:41,0:41:1430:0:0:0,-12.3422,-128.992	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.988	0/1:95:23,72:23:824:72:2565:-202.347,0,-45.8156	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:48:48,0:48:1694:0:0:0,-14.4494,-152.742	0/0:56:56,0:56:1973:0:0:0,-16.8577,-177.843	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/1:51:20,31:20:711:31:1116:-85.2671,0,-48.9631	0/1:15:2,13:2:72:13:468:-37.9332,0,-2.32127	0/0:108:108,0:108:3842:0:0:0,-32.5112,-345.974	0/0:67:66,1:66:2357:1:36:0,-16.5707,-208.789	0/1:44:15,29:15:532:29:1025:-79.1098,0,-34.9678	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:35:18,17:18:644:17:612:-44.7823,0,-47.7545	0/1:46:19,27:19:684:27:968:-73.5271,0,-48.0429	0/1:86:40,46:40:1425:46:1639:-121.8,0,-102.656	0/1:58:27,31:27:972:31:1108:-82.4175,0,-70.3382	0/1:13:9,4:9:320:4:144:-9.39651,0,-25.229	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1722	0/1:54:30,24:30:1076:24:856:-61.0136,0,-80.8972	0/1:21:11,10:11:384:10:348:-25.326,0,-28.573	0/0:37:37,0:37:1305:0:0:0,-11.1381,-117.749	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/1:40:21,19:21:756:19:659:-47.4837,0,-56.326	0/1:65:35,30:35:1252:30:1063:-76.292,0,-93.4181	0/1:24:10,14:10:360:14:489:-37.0429,0,-25.5196	0/0:40:40,0:40:1372:0:0:0,-12.0412,-123.768	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299
chr01	29611907	.	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chr01	29680897	.	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chr01	29680914	.	C	T	181970	PASS	AB=0.485565;ABP=12.7271;AC=148;AF=0.795699;AN=186;AO=8370;CIGAR=1X;DP=11147;DPB=11147;DPRA=0;EPP=17091.9;EPPR=5434.01;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.8707;MQMR=59.9755;NS=93;NUMALT=1;ODDS=0.264106;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=298880;QR=98016;RO=2774;RPL=126;RPP=17100.3;RPPR=5434.01;RPR=8244;RUN=1;SAF=8369;SAP=18169.5;SAR=1;SRF=2774;SRP=6026.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:922:-83.2956,-7.82678,0	0/1:149:67,82:67:2388:82:2901:-216.463,0,-170.32	1/1:128:0,128:0:0:128:4591:-413.343,-38.5318,0	1/1:182:0,182:0:0:182:6493:-584.404,-54.7875,0	0/1:57:38,19:38:1355:19:676:-44.0093,0,-105.091	0/1:82:36,46:36:1280:46:1644:-123.519,0,-90.8188	0/1:150:80,70:80:2855:70:2495:-179.646,0,-212.033	1/1:226:0,226:0:0:226:8082:-726.564,-68.0328,0	1/1:75:0,74:0:0:74:2643:-237.72,-22.2762,0	1/1:95:0,94:0:0:94:3356:-301.846,-28.2968,0	1/1:86:0,86:0:0:86:3073:-276.797,-25.8886,0	1/1:72:1,71:1:32:71:2533:-225.02,-18.4748,0	0/1:93:44,49:44:1567:49:1756:-130.292,0,-113.325	0/1:117:56,61:56:1960:61:2179:-161.155,0,-141.452	0/1:86:47,39:47:1657:39:1392:-99.677,0,-123.527	1/1:62:0,62:0:0:62:2224:-200.421,-18.6639,0	1/1:88:0,88:0:0:88:3147:-283.422,-26.4906,0	0/1:84:43,41:43:1536:41:1467:-107.039,0,-113.238	0/1:32:20,12:20:681:12:428:-29.2212,0,-51.9732	0/1:340:191,149:191:6721:149:5306:-375.291,0,-502.629	0/1:120:59,61:59:2064:61:2165:-158.973,0,-149.906	0/1:100:66,34:66:2321:34:1216:-79.6432,0,-179.047	1/1:108:2,106:2:72:106:3788:-334.226,-25.6745,0	1/1:147:4,143:4:140:143:5094:-445.657,-31.3068,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	0/1:357:200,157:200:7113:157:5603:-396.889,0,-532.764	1/1:208:1,207:1:36:207:7408:-663.152,-59.016,0	1/1:54:0,54:0:0:54:1923:-173.346,-16.2556,0	0/1:340:164,176:164:5779:176:6252:-460.427,0,-417.883	1/1:161:0,161:0:0:161:5751:-517.699,-48.4658,0	1/1:164:1,162:1:36:162:5775:-516.231,-45.8294,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	0/1:12:4,8:4:144:8:288:-22.5983,0,-9.70126	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:242:120,122:120:4219:122:4348:-318.61,0,-307.043	1/1:224:0,224:0:0:224:7944:-714.961,-67.4307,0	0/1:91:51,40:51:1791:40:1436:-102.144,0,-134.074	.:.:.:.:.:.:.:.	0/1:213:83,130:83:2923:130:4648:-354.292,0,-199.185	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:151:0,151:0:0:151:5414:-487.388,-45.4555,0	1/1:117:1,116:1:36:116:4133:-368.54,-31.6222,0	1/1:89:0,89:0:0:89:3179:-286.334,-26.7917,0	1/1:87:0,87:0:0:87:3097:-278.951,-26.1896,0	1/1:122:0,122:0:0:122:4376:-393.998,-36.7257,0	0/1:214:84,130:84:2966:130:4672:-356.206,0,-202.752	0/1:157:77,80:77:2738:80:2843:-208.83,0,-199.397	0/1:183:89,94:89:3148:94:3360:-247.528,0,-228.457	0/1:168:78,90:78:2730:90:3225:-239.881,0,-195.372	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:182:0,182:0:0:182:6515:-586.431,-54.7875,0	1/1:105:0,105:0:0:105:3753:-337.964,-31.6082,0	1/1:21:0,21:0:0:21:742:-67.1036,-6.32163,0	1/1:168:0,168:0:0:168:5988:-539.022,-50.573,0	1/1:39:0,39:0:0:39:1400:-126.281,-11.7402,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	1/1:107:0,107:0:0:107:3820:-343.979,-32.2102,0	1/1:138:0,138:0:0:138:4924:-443.308,-41.5421,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:232:0,232:0:0:232:8278:-744.997,-69.839,0	0/1:287:162,125:162:5729:125:4460:-314.659,0,-429.321	1/1:108:0,108:0:0:108:3876:-349.034,-32.5112,0	1/1:127:0,127:0:0:127:4527:-407.535,-38.2308,0	1/1:318:0,318:0:0:318:11334:-1019.92,-95.7275,0	0/1:103:66,37:66:2329:37:1320:-88.0601,0,-178.863	1/1:32:0,32:0:0:32:1128:-101.826,-9.63296,0	1/1:81:0,81:0:0:81:2898:-261.046,-24.3834,0	1/1:98:0,98:0:0:98:3486:-313.949,-29.5009,0	1/1:33:0,33:0:0:33:1157:-104.434,-9.93399,0	0/1:129:64,65:64:2254:65:2319:-170.101,0,-164.282	0/1:57:33,24:33:1184:24:855:-60.1091,0,-89.7014	1/1:233:0,233:0:0:233:8321:-748.895,-70.14,0	1/1:187:0,187:0:0:187:6689:-602.085,-56.2926,0	0/1:128:47,81:47:1663:81:2908:-223.423,0,-111.425	1/1:159:1,158:1:36:158:5646:-504.627,-44.2655,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:114:47,67:47:1659:67:2404:-182.299,0,-115.279	0/1:132:77,55:77:2704:55:1976:-137.848,0,-203.868	0/1:235:106,129:106:3713:129:4599:-343.298,0,-263.63	0/1:113:62,51:62:2207:51:1836:-131.468,0,-164.878	0/1:89:48,41:48:1707:41:1463:-105.174,0,-127.123	1/1:107:1,106:1:36:106:3785:-337.249,-28.6119,0	0/1:190:103,87:103:3659:87:3124:-224.19,0,-272.315	0/1:50:28,22:28:1004:22:792:-56.5542,0,-75.6244	1/1:94:0,94:0:0:94:3344:-301.138,-28.2968,0	1/1:89:0,89:0:0:89:3187:-286.946,-26.7917,0	0/1:59:32,27:32:1129:27:972:-70.0371,0,-84.1556	0/1:163:111,52:111:3895:52:1868:-119.331,0,-301.678	0/1:109:65,44:65:2316:44:1574:-109.136,0,-175.889	1/1:99:0,99:0:0:99:3520:-316.856,-29.802,0	1/1:121:0,121:0:0:121:4331:-389.321,-36.4246,0
chr01	29680941	.	A	G	45443.2	PASS	AB=0.517228;ABP=16.6278;AC=40;AF=0.212766;AN=188;AO=2749;CIGAR=1X;DP=10954;DPB=10954;DPRA=1.44882;EPP=5972.39;EPPR=17800.4;GTI=3;LEN=1;MEANALT=1.02083;MQM=59.9811;MQMR=59.9449;NS=94;NUMALT=1;ODDS=1.07654;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96964;QR=291214;RO=8204;RPL=2749;RPP=5972.39;RPPR=17809.1;RPR=0;RUN=1;SAF=2749;SAP=5972.39;SAR=0;SRF=8203;SRP=17809.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/1:139:76,63:76:2680:63:2238:-159.837,0,-199.572	0/0:126:126,0:126:4475:0:0:0,-37.9298,-402.913	0/0:176:176,0:176:6304:0:0:0,-52.9813,-567.323	0/1:61:20,41:20:708:41:1439:-111.442,0,-45.6828	0/1:81:44,37:44:1550:37:1320:-94.7185,0,-115.407	0/1:148:68,80:68:2428:80:2834:-210.747,0,-174.224	0/0:222:222,0:222:7876:0:0:0,-66.8287,-708.87	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.841	0/0:89:89,0:89:3162:0:0:0,-26.7917,-284.805	0/0:86:86,0:86:3043:0:0:0,-25.8886,-274.099	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.231	0/1:99:52,47:52:1841:47:1668:-120.605,0,-136.166	0/1:115:61,54:61:2161:54:1905:-137.107,0,-160.137	0/1:86:38,48:38:1332:48:1684:-125.956,0,-94.1308	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.13	0/0:82:82,0:82:2907:0:0:0,-24.6845,-261.857	0/1:81:40,41:40:1423:41:1446:-106.043,0,-103.983	0/1:31:11,20:11:387:20:707:-54.6233,0,-25.834	0/1:328:140,188:140:4968:188:6678:-502.358,0,-348.534	0/1:120:61,59:61:2172:59:2068:-150.265,0,-159.623	0/1:94:32,62:32:1144:62:2202:-170.146,0,-74.9727	0/0:111:109,2:109:3870:2:72:0,-26.5776,-341.66	0/0:150:144,6:144:5075:6:212:0,-25.7297,-437.473	0/0:62:62,0:62:2181:0:0:0,-18.6639,-196.555	0/1:352:152,200:152:5391:200:7104:-533.462,0,-379.364	0/0:201:200,1:200:7140:1:36:0,-56.9088,-639.059	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/1:335:170,165:170:6045:165:5807:-421.904,0,-443.312	0/0:162:161,1:161:5730:1:36:0,-45.1686,-512.214	0/0:161:160,1:160:5683:1:36:0,-44.8676,-507.987	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:11:7,4:7:243:4:140:-9.63325,0,-18.8962	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:236:117,119:117:4119:119:4199:-307.053,0,-299.854	0/0:225:225,0:225:8022:0:0:0,-67.7317,-721.976	0/1:90:40,50:40:1397:50:1745:-130.238,0,-98.9321	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:212:131,81:131:4633:81:2823:-190.49,0,-353.293	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:146:146,0:146:5193:0:0:0,-43.9504,-467.511	0/0:114:114,0:114:3996:0:0:0,-34.3174,-359.836	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.948	0/0:83:83,0:83:2934:0:0:0,-24.9855,-264.291	0/0:123:123,0:123:4361:0:0:0,-37.0267,-392.667	0/1:219:131,88:131:4625:88:3125:-215.548,0,-350.49	0/1:154:79,75:79:2802:75:2667:-193.913,0,-206.038	0/1:184:95,89:95:3355:89:3133:-226.807,0,-246.778	0/1:167:89,78:89:3162:78:2757:-198.1,0,-234.532	0/0:26:26,0:26:918:0:0:0,-7.82678,-82.9353	0/0:179:179,0:179:6366:0:0:0,-53.8844,-573.032	0/0:105:103,2:103:3648:2:68:0,-25.1504,-322.012	0/0:20:20,0:20:695:0:0:0,-6.0206,-62.8714	0/0:165:164,1:164:5824:1:32:0,-46.4706,-521.005	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.683	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.619	0/0:138:138,0:138:4899:0:0:0,-41.5421,-441.066	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/0:225:225,0:225:8007:0:0:0,-67.7317,-720.657	0/1:279:119,160:119:4219:160:5652:-424.817,0,-295.416	0/0:108:108,0:108:3835:0:0:0,-32.5112,-345.349	0/0:122:122,0:122:4355:0:0:0,-36.7257,-392.124	0/0:305:305,0:305:10807:0:0:0,-91.8141,-972.13	0/1:99:33,66:33:1168:66:2337:-180.786,0,-75.6252	0/0:32:32,0:32:1132:0:0:0,-9.63296,-102.189	0/0:79:79,0:79:2823:0:0:0,-23.7814,-254.309	0/0:97:97,0:97:3449:0:0:0,-29.1999,-310.623	0/0:30:30,0:30:1054:0:0:0,-9.0309,-95.1692	0/1:124:63,61:63:2235:61:2141:-155.619,0,-164.086	0/1:56:24,32:24:841:32:1122:-84.4286,0,-59.1463	0/0:225:225,0:225:7977:0:0:0,-67.7317,-717.959	0/0:190:190,0:190:6771:0:0:0,-57.1957,-609.464	0/1:127:81,46:81:2854:46:1611:-107.046,0,-218.869	0/0:158:157,1:157:5599:1:36:0,-43.9645,-500.436	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:109:65,44:65:2336:44:1557:-107.607,0,-177.687	0/1:128:53,75:53:1870:75:2630:-198.415,0,-130.046	0/1:227:126,100:126:4479:100:3516:-248.254,0,-334.874	0/1:113:52,61:52:1838:61:2123:-157.323,0,-131.683	0/1:89:41,48:41:1464:48:1681:-124.783,0,-105.264	0/0:102:102,0:102:3617:0:0:0,-30.7051,-325.737	0/1:192:88,104:88:3102:104:3641:-270.099,0,-221.609	0/1:49:22,27:22:792:27:955:-71.5144,0,-56.8552	0/0:90:90,0:90:3189:0:0:0,-27.0927,-287.234	0/0:90:90,0:90:3199:0:0:0,-27.0927,-288.134	0/1:59:28,31:28:1004:31:1090:-80.6471,0,-72.9151	0/1:158:51,107:51:1807:107:3762:-291.221,0,-115.348	0/1:106:39,67:39:1388:67:2353:-180.119,0,-93.3028	0/0:97:96,1:96:3426:1:36:0,-25.6016,-304.398	0/0:117:117,0:117:4123:0:0:0,-35.2205,-371.255
chr01	29799897	.	C	A	84081	PASS	AB=0.528636;ABP=52.1337;AC=39;AF=0.207447;AN=188;AO=3687;CIGAR=1X;DP=14243;DPB=14243;DPRA=1.47965;EPP=8009.23;EPPR=22922.9;GTI=5;LEN=1;MEANALT=1.01961;MQM=59.9883;MQMR=59.9958;NS=94;NUMALT=1;ODDS=0.544608;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131372;QR=375265;RO=10555;RPL=1599;RPP=143.842;RPPR=443.347;RPR=2088;RUN=1;SAF=1599;SAP=143.842;SAR=2088;SRF=4546;SRP=443.347;SRR=6009;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2117:0:0:0,-18.0618,-190.797	0/1:187:79,108:79:2798:108:3854:-290.764,0,-195.768	0/0:225:225,0:225:7953:0:0:0,-67.7317,-715.795	0/0:277:276,1:276:9764:1:32:0,-80.186,-875.517	0/1:23:13,10:13:455:10:360:-25.8206,0,-34.3583	0/1:67:34,33:34:1216:33:1184:-86.6993,0,-89.5776	0/1:249:129,120:129:4599:120:4279:-310.332,0,-339.119	0/0:208:207,1:207:7343:1:36:0,-59.016,-657.327	0/0:197:197,0:197:6999:0:0:0,-59.3029,-629.98	0/0:175:175,0:175:6228:0:0:0,-52.6802,-560.615	0/0:146:146,0:146:5212:0:0:0,-43.9504,-469.218	0/0:192:192,0:192:6797:0:0:0,-57.7978,-611.799	0/1:145:68,77:68:2440:77:2741:-203.282,0,-176.206	0/1:206:111,95:111:3945:95:3367:-241.234,0,-293.23	0/1:160:82,78:82:2907:78:2794:-203.535,0,-213.702	0/0:125:125,0:125:4462:0:0:0,-37.6287,-401.75	0/0:166:166,0:166:5902:0:0:0,-49.971,-531.291	0/1:160:82,78:82:2928:78:2748:-199.395,0,-215.59	0/1:75:37,38:37:1328:38:1351:-99.3123,0,-97.245	0/1:243:105,138:105:3727:138:4943:-371.869,0,-262.48	0/1:246:118,128:118:4176:128:4576:-337.952,0,-301.968	0/1:110:36,74:36:1265:74:2639:-204.643,0,-81.0373	0/0:98:97,1:97:3405:1:36:0,-25.9027,-303.065	0/0:218:200,18:200:7103:18:648:0,-6.97266,-580.679	0/0:97:97,0:97:3464:0:0:0,-29.1999,-311.97	0/1:375:166,209:166:5887:209:7463:-558.828,0,-417.058	0/0:375:375,0:375:13347:0:0:0,-112.886,-1201.03	0/0:90:90,0:90:3173:0:0:0,-27.0927,-285.796	0/1:392:210,182:210:7500:182:6439:-461.594,0,-557.038	0/0:243:243,0:243:8633:0:0:0,-73.1503,-776.955	0/0:153:153,0:153:5456:0:0:0,-46.0576,-491.171	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:438:219,219:219:7792:219:7795:-569.731,0,-569.463	0/0:158:158,0:158:5612:0:0:0,-47.5627,-505.202	0/1:143:64,79:64:2276:79:2832:-212.071,0,-162.055	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:202:87,115:87:3069:115:4094:-307.831,0,-215.632	0/0:65:65,0:65:2314:0:0:0,-19.5669,-208.519	0/0:190:190,0:190:6764:0:0:0,-57.1957,-608.836	0/0:115:115,0:115:4094:0:0:0,-34.6184,-368.647	0/0:142:142,0:142:5058:0:0:0,-42.7463,-455.367	0/0:141:141,0:141:4983:0:0:0,-42.4452,-448.62	0/0:116:113,3:113:4039:3:108:0,-24.8443,-353.623	0/1:193:96,97:96:3386:97:3446:-252.255,0,-246.86	0/1:175:92,83:92:3283:83:2946:-212.692,0,-243.01	0/1:277:123,154:123:4399:154:5522:-413.715,0,-312.697	0/1:200:106,94:106:3768:94:3316:-238.453,0,-279.113	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:190:190,0:190:6795:0:0:0,-57.1957,-611.622	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:180:179,1:179:6301:1:32:0,-50.9861,-563.993	0/0:60:60,0:60:2122:0:0:0,-18.0618,-191.248	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:129:129,0:129:4577:0:0:0,-38.8329,-412.095	0/0:238:236,2:236:8410:2:72:0,-64.8084,-750.072	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:191:190,1:190:6731:1:36:0,-53.8985,-602.27	0/1:253:113,140:113:4020:140:4983:-372.457,0,-285.828	0/0:109:109,0:109:3855:0:0:0,-32.8123,-347.147	0/0:83:83,0:83:2926:0:0:0,-24.9855,-263.574	0/0:176:174,2:174:6179:2:72:0,-46.1446,-549.374	0/1:169:56,113:56:1994:113:4041:-313.003,0,-128.859	0/0:84:83,1:83:2972:1:36:0,-21.6882,-264.115	0/0:96:96,0:96:3410:0:0:0,-28.8989,-307.115	0/0:181:181,0:181:6452:0:0:0,-54.4864,-580.767	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:194:74,120:74:2614:120:4262:-325.361,0,-177.106	0/1:158:72,86:72:2548:86:3071:-229.056,0,-182.007	0/0:286:286,0:286:10197:0:0:0,-86.0946,-917.661	0/0:230:228,2:228:8118:2:72:0,-62.4002,-723.797	0/1:47:25,22:25:887:22:792:-57.4573,0,-65.9997	0/0:160:152,8:152:5440:8:284:0,-22.2614,-463.826	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:178:81,97:81:2896:97:3435:-255.777,0,-207.293	0/1:137:59,78:59:2116:78:2795:-210.548,0,-149.468	0/1:257:134,122:134:4754:122:4367:-315.553,0,-350.595	0/1:200:107,93:107:3786:93:3312:-238.088,0,-280.733	0/1:177:81,96:81:2900:96:3403:-253.203,0,-207.954	0/0:149:149,0:149:5281:0:0:0,-44.8535,-475.43	0/1:288:133,155:133:4763:155:5494:-407.893,0,-342.13	0/1:63:33,30:33:1179:30:1075:-78.098,0,-87.4523	0/0:142:142,0:142:5050:0:0:0,-42.7463,-454.645	0/0:186:186,0:186:6625:0:0:0,-55.9916,-596.332	0/1:115:49,66:49:1739:66:2361:-178.128,0,-122.175	0/1:228:114,114:114:4040:114:4075:-298.301,0,-295.154	0/1:147:56,91:56:2003:91:3253:-248.738,0,-136.291	0/0:114:114,0:114:4067:0:0:0,-34.3174,-366.217	0/0:229:229,0:229:8182:0:0:0,-68.9359,-736.395
chr01	29836355	.	C	T	28323.6	PASS	AB=0.477207;ABP=18.6504;AC=38;AF=0.202128;AN=188;AO=1655;CIGAR=1X;DP=7953;DPB=7953;DPRA=1.11184;EPP=3433.66;EPPR=12935.6;GTI=0;LEN=1;MEANALT=1;MQM=59.8924;MQMR=59.9844;NS=94;NUMALT=1;ODDS=2.30768;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59280;QR=224778;RO=6295;RPL=19;RPP=3433.66;RPPR=12935.6;RPR=1636;RUN=1;SAF=1655;SAP=3596.8;SAR=0;SRF=6295;SRP=13672.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.903	0/1:52:25,27:25:896:27:972:-72.1411,0,-65.3068	0/0:156:156,0:156:5570:0:0:0,-46.9607,-501.416	0/0:190:190,0:190:6791:0:0:0,-57.1957,-611.263	0/1:57:32,25:32:1152:25:900:-64.1623,0,-86.8314	0/1:67:41,26:41:1464:26:932:-64.0299,0,-111.887	0/1:65:35,30:35:1260:30:1072:-77.2246,0,-94.1385	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.055	0/0:97:97,0:97:3451:0:0:0,-29.1999,-310.799	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.743	0/0:112:112,0:112:4013:0:0:0,-33.7154,-361.357	0/0:98:98,0:98:3490:0:0:0,-29.5009,-313.114	0/1:70:38,32:38:1347:32:1152:-82.9171,0,-100.457	0/1:94:55,39:55:1976:39:1404:-98.3621,0,-149.818	0/1:68:35,33:35:1251:33:1179:-85.9472,0,-92.4242	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:35:26,9:26:932:9:324:-18.9698,0,-73.6628	0/1:59:28,31:28:1008:31:1107:-82.1794,0,-73.2756	0/1:130:55,75:55:1976:75:2679:-202.22,0,-138.981	0/1:104:43,61:43:1539:61:2188:-165.879,0,-107.495	0/1:84:29,55:29:1021:55:1963:-151.658,0,-66.9137	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:40:39,1:39:1370:1:36:0,-8.44292,-119.999	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:214:117,97:117:4173:97:3473:-248.36,0,-311.331	0/0:238:238,0:238:8469:0:0:0,-71.6451,-762.214	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/1:208:134,74:134:4784:74:2656:-176.669,0,-368.104	0/0:131:131,0:131:4639:0:0:0,-39.4349,-417.675	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.835	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:173:90,83:90:3206:83:2962:-214.678,0,-236.685	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:77:34,43:34:1205:43:1515:-113.462,0,-85.5746	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:108:62,46:62:2212:46:1648:-116.097,0,-166.834	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:159:159,0:159:5673:0:0:0,-47.8638,-510.689	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/0:117:117,0:117:4166:0:0:0,-35.2205,-375.124	0/1:156:74,82:74:2646:82:2943:-218.14,0,-191.425	0/1:72:28,44:28:996:44:1580:-120.817,0,-68.2807	0/1:101:50,51:50:1779:51:1836:-135.117,0,-129.988	0/1:76:50,26:50:1792:26:928:-60.96,0,-138.684	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:145:145,0:145:5184:0:0:0,-43.6493,-466.701	0/0:59:58,0:58:2080:0:0:0,-17.4597,-187.11	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/0:135:135,0:135:4818:0:0:0,-40.639,-433.775	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:10:10,0:10:332:0:0:0,-3.0103,-30.2001	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.966	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:20:19,0:19:676:0:0:0,-5.71957,-60.8084	0/0:173:173,0:173:6190:0:0:0,-52.0782,-557.196	0/1:94:38,56:38:1364:56:2008:-152.566,0,-94.7639	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.113	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/1:63:17,46:17:599:46:1639:-128.833,0,-35.2732	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/1:91:51,40:51:1820:40:1431:-101.687,0,-136.688	0/1:65:30,35:30:1068:35:1256:-93.7774,0,-76.8651	0/0:205:204,0:204:7243:0:0:0,-61.4101,-651.568	0/0:131:131,0:131:4679:0:0:0,-39.4349,-421.272	0/1:107:50,57:50:1775:57:2035:-151.211,0,-127.822	0/0:114:114,0:114:4079:0:0:0,-34.3174,-367.296	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:100:51,49:51:1828:49:1760:-128.552,0,-134.627	0/1:105:66,39:66:2364:39:1388:-93.5024,0,-181.41	0/1:162:95,67:95:3392:67:2412:-168.568,0,-256.729	0/1:48:31,17:31:1112:17:612:-40.964,0,-85.9419	0/1:83:49,34:49:1760:34:1216:-84.7605,0,-133.698	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:132:70,62:70:2504:62:2223:-160.598,0,-185.877	0/1:24:14,10:14:500:10:351:-24.702,0,-38.1115	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.76	0/1:82:48,34:48:1724:34:1224:-85.7826,0,-130.761	0/1:134:73,61:73:2598:61:2192:-157.174,0,-193.727	0/1:76:27,49:27:968:49:1760:-135.484,0,-64.5591	0/0:106:106,0:106:3778:0:0:0,-31.9092,-340.219	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.203
chr01	29836361	.	TCCCTCG	TCCGTCG,TCCATCA	166710	PASS	AB=0.511291,0.478865;ABP=6.83521,16.4113;AC=150,38;AF=0.797872,0.202128;AN=188;AO=6120,1655;CIGAR=3M1X3M,3M1X2M1X;DP=7861;DPB=7863;DPRA=0,1.12775;EPP=13283.7,3596.8;EPPR=9.52472;GTI=0;LEN=1,7;MEANALT=2.23404,2.82051;MQM=59.9989,59.9202;MQMR=60;NS=94;NUMALT=2;ODDS=2.69637;PAIRED=0,0;PAIREDR=0;PAO=2.66667,2.66667;PQA=70.3333,70.3333;PQR=70.3333;PRO=2.66667;QA=216930,58350;QR=71;RO=3;RPL=6119,1655;RPP=13283.7,3596.8;RPPR=9.52472;RPR=1,0;RUN=1,1;SAF=6120,1655;SAP=13292.4,3596.8;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48,0:0:0:48,0:1701,0:-153.374,-14.4494,0,-153.374,-14.4494,-153.374	1/2:52:0,25,24:0:0:25,24:896,848:-142.156,-69.0762,-61.5505,-73.0958,0,-65.8711	1/1:153:0,150,0:0:0:150,0:5298,0:-476.657,-45.1545,0,-476.657,-45.1545,-476.657	1/1:184:0,183,0:0:0:183,0:6487,0:-583.56,-55.0885,0,-583.56,-55.0885,-583.56	1/2:56:0,30,25:0:0:30,25:1061,883:-158.318,-71.9027,-62.8718,-86.4088,0,-78.8831	1/2:68:0,42,26:0:0:42,26:1508,928:-199.025,-76.0114,-63.3682,-123.371,0,-115.545	1/2:64:0,34,29:0:0:34,29:1220,1009:-181.548,-82.0296,-71.7946,-99.512,0,-90.7821	1/1:118:0,118,0:0:0:118,0:4155,0:-374.134,-35.5215,0,-374.134,-35.5215,-374.134	1/1:98:0,97,0:0:0:97,0:3464,0:-311.608,-29.1999,0,-311.608,-29.1999,-311.608	1/1:63:0,63,0:0:0:63,0:2243,0:-202.133,-18.9649,0,-202.133,-18.9649,-202.133	1/1:112:0,110,0:0:0:110,0:3900,0:-350.889,-33.1133,0,-350.889,-33.1133,-350.889	1/1:93:0,92,0:0:0:92,0:3248,0:-292.18,-27.6948,0,-292.18,-27.6948,-292.18	1/2:68:0,35,32:0:0:35,32:1244,1131:-193.538,-92.163,-81.6269,-101.427,0,-91.7942	1/2:92:0,55,37:0:0:55,37:1926,1296:-262.509,-105.802,-89.2458,-157.056,0,-145.918	1/2:66:0,33,33:0:0:33,33:1171,1151:-189.372,-93.9609,-84.0269,-95.7627,0,-85.8287	1/1:91:0,90,0:0:0:90,0:3186,0:-286.613,-27.0927,0,-286.613,-27.0927,-286.613	1/1:38:0,38,0:0:0:38,0:1320,0:-119.097,-11.4391,0,-119.097,-11.4391,-119.097	1/2:35:0,25,10:0:0:25,10:885,359:-101.675,-29.5958,-22.07,-72.3901,0,-69.3798	1/2:59:0,28,31:0:0:28,31:1004,1079:-169.979,-88.0852,-79.6564,-82.247,0,-72.9151	1/2:130:0,53,77:0:0:53,77:1854,2692:-370.18,-219.346,-203.392,-151.183,0,-128.003	1/2:105:0,43,62:0:0:43,62:1531,2204:-304.744,-179.961,-167.017,-125.138,0,-106.474	1/2:84:0,29,53:0:0:29,53:1031,1875:-236.771,-152.753,-144.023,-84.0506,0,-68.096	1/1:91:0,91,0:0:0:91,0:3251,0:-292.811,-27.3937,0,-292.811,-27.3937,-292.811	1/1:39:0,37,1:0:0:37,1:1312,36:-118.022,-11.1381,0,-115.085,-8.20069,-114.784	1/1:74:0,73,0:0:0:73,0:2604,0:-234.308,-21.9752,0,-234.308,-21.9752,-234.308	1/2:215:0,116,97:0:0:116,97:4131,3434:-616.456,-279.754,-244.835,-336.736,0,-307.536	1/1:236:0,232,0:0:0:232,0:8168,0:-734.803,-69.839,0,-734.803,-69.839,-734.803	1/1:39:0,39,0:0:0:39,0:1348,0:-121.564,-11.7402,0,-121.564,-11.7402,-121.564	1/2:211:0,132,74:0:0:132,74:4686,2612:-594.521,-212.706,-172.97,-381.829,0,-359.553	1/1:125:1,120,0:1:22:120,0:4226,0:-378.216,-34.4717,0,-378.517,-36.1236,-380.195	1/1:71:0,71,0:0:0:71,0:2544,0:-229.211,-21.3731,0,-229.211,-21.3731,-229.211	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3154,-8.42884,0,-90.3154,-8.42884,-90.3154	1/2:11:0,9,2:0:0:9,2:324,72:-32.6714,-6.23466,-3.52539,-26.7966,0,-26.1945	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:51:0,51,0:0:0:51,0:1819,0:-163.991,-15.3525,0,-163.991,-15.3525,-163.991	1/2:173:0,89,84:0:0:89,84:3088,2968:-493.042,-242.039,-215.248,-251.353,0,-226.067	1/1:104:0,103,0:0:0:103,0:3638,0:-327.265,-31.0061,0,-327.265,-31.0061,-327.265	1/2:78:0,34,44:0:0:34,44:1220,1549:-225.973,-126.456,-116.221,-99.8718,0,-86.6265	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:106:0,59,46:0:0:59,46:2112,1612:-303.395,-131.161,-113.4,-172.228,0,-158.381	1/1:48:0,48,0:0:0:48,0:1695,0:-152.835,-14.4494,0,-152.835,-14.4494,-152.835	1/1:155:0,150,0:0:0:150,0:5347,0:-481.029,-45.1545,0,-481.029,-45.1545,-481.029	1/1:58:0,58,0:0:0:58,0:2048,0:-184.589,-17.4597,0,-184.589,-17.4597,-184.589	1/1:57:0,57,0:0:0:57,0:2024,0:-182.43,-17.1587,0,-182.43,-17.1587,-182.43	1/1:62:0,62,0:0:0:62,0:2199,0:-198.175,-18.6639,0,-198.175,-18.6639,-198.175	1/1:113:1,112,0:1:20:112,0:3996,0:-357.829,-32.0164,0,-358.13,-33.7154,-359.628	1/2:153:0,71,82:0:0:71,82:2515,2877:-439.348,-234.471,-213.098,-205.23,0,-180.545	1/2:71:0,27,44:0:0:27,44:960,1555:-205.229,-126.995,-118.868,-78.5885,0,-65.3431	1/2:100:0,48,50:0:0:48,50:1711,1750:-281.873,-142.4,-127.951,-139.495,0,-124.443	1/2:77:0,50,27:0:0:50,27:1771,965:-223.304,-79.0396,-63.9881,-144.621,0,-136.493	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:142:0,140,0:0:0:140,0:4959,0:-446.187,-42.1442,0,-446.187,-42.1442,-446.187	1/1:57:0,56,0:0:0:56,0:2008,0:-180.741,-16.8577,0,-180.741,-16.8577,-180.741	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:131:0,127,0:0:0:127,0:4519,0:-406.549,-38.2308,0,-406.549,-38.2308,-406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chr01	29836407	.	A	G	33545.5	PASS	AB=0.507254;ABP=4.86889;AC=38;AF=0.202128;AN=188;AO=2087;CIGAR=1X;DP=8211;DPB=8211;DPRA=1.5115;EPP=4534.87;EPPR=13296.8;GTI=5;LEN=1;MEANALT=1.04167;MQM=54.1529;MQMR=53.6424;NS=94;NUMALT=1;ODDS=0.391271;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73393;QR=217344;RO=6122;RPL=0;RPP=4534.87;RPPR=13296.8;RPR=2087;RUN=1;SAF=0;SAP=4534.87;SAR=2087;SRF=0;SRP=13296.8;SRR=6122;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.4282	0/1:65:20,45:20:716:45:1586:-122.7,0,-44.817	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.036	0/0:155:155,0:155:5508:0:0:0,-46.6596,-493.827	0/1:61:26,35:26:915:35:1243:-93.2095,0,-63.7926	0/1:32:15,17:15:525:17:594:-43.5618,0,-37.8094	0/1:101:65,36:65:2311:36:1252:-82.2969,0,-177.546	0/0:108:105,2:105:3764:2:63:0,-26.4832,-328.68	0/0:103:103,0:103:3643:0:0:0,-31.0061,-326.139	0/0:114:114,0:114:4054:0:0:0,-34.3174,-364.014	0/0:34:34,0:34:1216:0:0:0,-10.235,-108.96	0/0:83:83,0:83:2968:0:0:0,-24.9855,-264.557	0/1:110:67,43:67:2381:43:1536:-104.4,0,-179.256	0/1:93:40,53:40:1436:53:1835:-137.179,0,-101.114	0/1:87:44,43:44:1567:43:1512:-109.954,0,-114.481	0/0:56:56,0:56:1973:0:0:0,-16.8577,-177.589	0/0:90:90,0:90:3183:0:0:0,-27.0927,-285.399	0/1:103:52,51:52:1845:51:1775:-128.614,0,-134.59	0/1:47:20,27:20:711:27:968:-72.7453,0,-49.8114	0/1:159:78,81:78:2776:81:2868:-209.213,0,-201.05	0/1:112:65,47:65:2324:47:1663:-115.156,0,-174.92	0/1:142:35,107:35:1234:107:3797:-298.32,0,-68.3556	0/0:93:92,1:92:3256:1:36:0,-24.4001,-289.088	0/0:110:100,10:100:3536:10:356:0,-0.775699,-283.169	0/0:63:63,0:63:2217:0:0:0,-18.9649,-199.412	0/1:255:132,122:132:4695:122:4311:-310.895,0,-345.431	0/0:155:155,0:155:5522:0:0:0,-46.6596,-494.854	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.359	0/1:216:97,119:97:3452:119:4198:-312.525,0,-245.238	0/0:97:95,2:95:3382:2:68:0,-22.749,-296.892	0/0:108:108,0:108:3850:0:0:0,-32.5112,-344.853	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7624	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.0839	0/1:5:2,3:2:72:3:108:-8.54469,0,-5.31438	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2801	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7351	0/1:252:140,112:140:4930:112:3927:-276.944,0,-367.675	0/0:128:128,0:128:4547:0:0:0,-38.5318,-407.08	0/1:72:46,26:46:1626:26:915:-60.2867,0,-124.024	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.45449	0/1:145:84,61:84:2969:61:2151:-148.897,0,-222.792	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.02	0/0:101:101,0:101:3593:0:0:0,-30.404,-322.66	0/0:117:117,0:117:4133:0:0:0,-35.2205,-371.265	0/0:88:88,0:88:3079:0:0:0,-26.4906,-277.007	0/0:97:97,0:97:3433:0:0:0,-29.1999,-308.208	0/0:109:109,0:109:3855:0:0:0,-32.8123,-344.924	0/1:166:68,98:68:2440:98:3459:-260.462,0,-169.677	0/1:81:36,45:36:1283:45:1607:-120.133,0,-91.1827	0/1:94:40,54:40:1419:54:1873:-140.317,0,-99.3187	0/1:124:60,64:60:2160:64:2291:-168.622,0,-156.986	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.925	0/0:81:81,0:81:2872:0:0:0,-24.3834,-257.273	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.4391	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.4567	0/0:101:100,1:100:3561:1:36:0,-26.9495,-316.241	0/0:74:74,0:74:2633:0:0:0,-22.2762,-235.55	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3099	0/1:8:3,5:3:99:5:171:-13.1536,0,-6.82634	0/0:39:39,0:39:1387:0:0:0,-11.7402,-124.174	0/0:138:137,1:137:4838:1:32:0,-38.3439,-431.065	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59568	0/0:186:186,0:186:6656:0:0:0,-55.9916,-597.413	0/1:193:91,102:91:3224:102:3545:-260.459,0,-231.477	0/0:27:26,1:26:936:1:36:0,-4.67332,-80.7874	0/0:61:61,0:61:2121:0:0:0,-18.3628,-190.705	0/0:105:102,3:102:3615:3:104:0,-21.9172,-315.346	0/1:62:13,49:13:468:49:1729:-136.366,0,-23.6749	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.6661	0/0:61:59,2:59:2090:2:72:0,-11.5433,-180.165	0/0:92:92,0:92:3275:0:0:0,-27.6948,-293.451	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.0789	0/1:120:64,56:64:2274:56:1978:-141.023,0,-166.343	0/1:42:23,19:23:816:19:667:-47.5615,0,-60.8348	0/0:91:91,0:91:3252:0:0:0,-27.3937,-290.433	0/0:148:148,0:148:5312:0:0:0,-44.5524,-476.837	0/1:101:54,47:54:1931:47:1660:-117.76,0,-141.513	0/0:96:96,0:96:3433:0:0:0,-28.8989,-306.278	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1484	0/1:117:49,68:49:1747:68:2420:-182.029,0,-121.525	0/1:79:37,42:37:1332:42:1472:-108.618,0,-95.9057	0/1:154:84,70:84:2988:70:2478:-176.388,0,-222.074	0/1:120:75,45:75:2630:45:1586:-106.469,0,-200.108	0/1:73:42,31:42:1462:31:1052:-72.6951,0,-108.709	0/0:125:125,0:125:4408:0:0:0,-37.6287,-395.165	0/1:204:113,91:113:3999:91:3153:-221.684,0,-297.178	0/1:43:21,22:21:748:22:784:-57.587,0,-53.5863	0/0:118:117,1:117:4120:1:27:0,-32.8547,-365.32	0/0:102:102,0:102:3575:0:0:0,-30.7051,-319.614	0/1:50:17,33:17:604:33:1148:-88.0731,0,-39.1892	0/1:85:51,34:51:1801:34:1134:-76.4349,0,-136.366	0/1:94:34,60:34:1220:60:2117:-162.08,0,-81.1206	0/0:59:59,0:59:2120:0:0:0,-17.7608,-190.617	0/0:137:137,0:137:4840:0:0:0,-41.2411,-434.091
chr01	29836424	.	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chr01	29862227	.	C	T	78726	PASS	AB=0.486726;ABP=6.46928;AC=144;AF=0.791209;AN=182;AO=3798;CIGAR=1X;DP=4960;DPB=4960;DPRA=0;EPP=8250.26;EPPR=2524.09;GTI=1;LEN=1;MEANALT=1.01099;MQM=59.4466;MQMR=59.9578;NS=91;NUMALT=1;ODDS=0.314281;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133660;QR=41213;RO=1161;RPL=3798;RPP=8250.26;RPPR=2524.09;RPR=0;RUN=1;SAF=0;SAP=8250.26;SAR=3798;SRF=0;SRP=2524.09;SRR=1161;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:980:-88.5129,-8.42884,0	0/1:39:24,15:24:852:15:532:-36.4706,0,-65.2602	1/1:32:0,32:0:0:32:1121:-101.196,-9.63296,0	1/1:126:0,126:0:0:126:4393:-395.486,-37.9298,0	0/1:32:19,13:19:676:13:468:-32.8053,0,-51.535	0/1:31:26,5:26:932:5:180:-7.21775,0,-74.8669	0/1:65:40,25:40:1421:25:880:-59.9446,0,-108.618	1/1:80:1,79:1:36:79:2756:-244.663,-20.4841,0	1/1:42:0,42:0:0:42:1500:-135.288,-12.6433,0	1/1:40:0,40:0:0:40:1405:-126.681,-12.0412,0	1/1:71:0,71:0:0:71:2510:-226.103,-21.3731,0	1/1:92:0,92:0:0:92:3260:-293.613,-27.6948,0	0/1:55:18,37:18:648:37:1316:-102.097,0,-42.0952	0/1:92:44,48:44:1557:48:1712:-126.66,0,-112.725	0/1:62:34,28:34:1205:28:1004:-71.9978,0,-90.09	1/1:68:0,68:0:0:68:2397:-215.966,-20.47,0	1/1:40:0,40:0:0:40:1421:-128.183,-12.0412,0	0/1:22:10,12:10:360:12:424:-31.8738,0,-26.1216	0/1:37:20,17:20:720:17:597:-42.9157,0,-53.9907	0/1:59:34,25:34:1175:25:869:-60.7493,0,-88.2873	0/1:96:49,47:49:1756:47:1657:-120.508,0,-129.425	0/1:55:34,21:34:1205:21:706:-47.2768,0,-92.1972	1/1:95:0,95:0:0:95:3367:-303.179,-28.5979,0	0/1:35:6,29:6:212:29:1021:-81.6406,0,-8.88875	1/1:46:0,46:0:0:46:1617:-145.782,-13.8474,0	0/1:141:56,85:56:1946:85:3021:-229.594,0,-132.968	1/1:81:0,81:0:0:81:2821:-254.1,-24.3834,0	1/1:14:0,14:0:0:14:500:-45.3148,-4.21442,0	0/1:98:52,46:52:1849:46:1610:-115.652,0,-137.173	1/1:107:0,107:0:0:107:3824:-344.309,-32.2102,0	1/1:39:0,39:0:0:39:1365:-123.08,-11.7402,0	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:147:73,74:73:2584:74:2648:-194.297,0,-188.552	1/1:70:0,70:0:0:70:2427:-218.384,-21.0721,0	0/1:56:20,36:20:716:36:1296:-100.076,0,-47.91	.:.:.:.:.:.:.:.	0/1:48:28,20:28:989:20:689:-47.8471,0,-74.8726	1/1:27:0,27:0:0:27:956:-86.3451,-8.12781,0	1/1:95:0,95:0:0:95:3358:-302.149,-28.5979,0	1/1:64:0,64:0:0:64:2270:-204.475,-19.2659,0	1/1:47:0,47:0:0:47:1676:-151.086,-14.1484,0	1/1:69:0,69:0:0:69:2424:-218.242,-20.7711,0	1/1:26:0,26:0:0:26:909:-82.1211,-7.82678,0	0/1:56:20,36:20:720:36:1253:-96.1986,0,-48.2711	0/1:55:36,19:36:1258:19:676:-44.5838,0,-96.9616	0/1:55:33,22:33:1169:22:750:-51.226,0,-88.9449	0/1:73:38,35:38:1348:35:1198:-86.1422,0,-99.6451	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	1/1:47:0,47:0:0:47:1653:-149.056,-14.1484,0	1/1:36:0,36:0:0:36:1284:-115.812,-10.8371,0	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:43:0,43:0:0:43:1512:-136.322,-12.9443,0	1/1:38:0,38:0:0:38:1336:-120.526,-11.4391,0	1/1:5:0,5:0:0:5:165:-15.173,-1.50515,0	0/1:6:4,2:4:129:2:68:-4.65153,0,-10.0985	1/1:63:0,63:0:0:63:2217:-199.678,-18.9649,0	1/1:107:0,107:0:0:107:3794:-341.56,-32.2102,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:102:0,102:0:0:102:3535:-318.269,-30.7051,0	0/1:82:52,30:52:1864:30:1068:-70.9551,0,-143.355	1/1:45:0,45:0:0:45:1596:-143.712,-13.5464,0	1/1:26:0,26:0:0:26:890:-80.3913,-7.82678,0	1/1:59:0,59:0:0:59:2065:-186.083,-17.7608,0	0/1:51:36,15:36:1292:15:536:-33.2223,0,-101.231	1/1:40:0,40:0:0:40:1401:-126.353,-12.0412,0	1/1:20:0,20:0:0:20:693:-62.6896,-6.0206,0	1/1:38:0,38:0:0:38:1360:-122.667,-11.4391,0	1/1:10:0,10:0:0:10:356:-32.3674,-3.0103,0	0/1:41:24,17:24:830:17:608:-42.7098,0,-62.6701	0/1:46:28,18:28:1004:18:632:-43.3584,0,-76.8285	1/1:132:0,132:0:0:132:4670:-420.405,-39.736,0	1/1:88:0,88:0:0:88:3041:-273.868,-26.4906,0	0/1:51:31,20:31:1097:20:705:-48.3978,0,-83.6855	1/1:68:1,67:1:36:67:2323:-205.616,-16.8718,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:36:15,21:15:540:21:736:-55.7253,0,-38.0995	0/1:39:14,25:14:500:25:877:-67.5027,0,-33.5958	0/1:92:53,38:53:1892:38:1299:-89.4357,0,-142.791	0/1:40:14,26:14:489:26:932:-71.8868,0,-32.2977	0/1:53:24,29:24:860:29:1012:-75.4302,0,-61.7672	1/1:37:0,37:0:0:37:1328:-119.794,-11.1381,0	0/1:81:38,43:38:1345:43:1517:-112.437,0,-96.9647	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:72:0,72:0:0:72:2537:-228.574,-21.6742,0	1/1:69:0,69:0:0:69:2392:-215.533,-20.7711,0	0/1:49:19,30:19:684:30:1057:-80.6885,0,-47.1399	0/1:98:41,57:41:1468:57:2021:-152.619,0,-102.915	0/1:73:47,26:47:1669:26:932:-62.2099,0,-128.52	1/1:25:0,25:0:0:25:877:-79.2177,-7.52575,0	1/1:95:0,95:0:0:95:3329:-299.75,-28.5979,0
chr01	29863743	.	ACA	AAA	25880.7	PASS	AB=0.482298;ABP=11.7744;AC=40;AF=0.212766;AN=188;AO=1564;CIGAR=1M1X1M;DP=7516;DPB=7496;DPRA=1.14354;EPP=3399.19;EPPR=12725.7;GTI=1;LEN=1;MEANALT=1.75556;MQM=58.7711;MQMR=59.9147;NS=94;NUMALT=1;ODDS=3.90277;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55992;QR=207345;RO=5875;RPL=1564;RPP=3399.19;RPPR=12725.7;RPR=0;RUN=1;SAF=0;SAP=3399.19;SAR=1564;SRF=0;SRP=12760.4;SRR=5875;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1664:0:0:0,-14.1484,-150.046	0/1:68:23,44:23:805:44:1584:-122.238,0,-52.2333	0/0:126:126,0:126:4402:0:0:0,-37.9298,-396.299	0/0:230:230,0:230:8177:0:0:0,-69.2369,-735.947	0/1:8:2,6:2:72:6:216:-17.3813,0,-4.42848	0/1:18:11,7:11:387:7:252:-17.6058,0,-29.7474	0/1:71:42,27:42:1451:27:956:-65.0895,0,-109.75	0/0:156:156,0:156:5521:0:0:0,-46.9607,-497.017	0/0:55:55,0:55:1930:0:0:0,-16.5566,-173.975	0/0:95:94,0:94:3234:0:0:0,-28.2968,-290.876	0/0:61:61,0:61:2178:0:0:0,-18.3628,-196.286	0/0:104:103,0:103:3609:0:0:0,-31.0061,-324.62	0/1:72:35,35:35:1260:35:1256:-91.8572,0,-92.2744	0/1:62:27,33:27:966:33:1168:-86.5031,0,-68.9061	0/1:75:36,39:36:1286:39:1396:-103.158,0,-93.4658	0/0:70:70,0:70:2463:0:0:0,-21.0721,-221.914	0/0:46:45,0:45:1583:0:0:0,-13.5463,-142.396	0/1:33:15,17:15:536:17:612:-45.3947,0,-38.5833	0/1:28:17,10:17:610:10:360:-24.2118,0,-46.7461	0/1:164:93,70:93:3328:70:2503:-175.748,0,-250.31	0/1:124:61,60:61:2163:60:2152:-156.971,0,-158.171	0/1:47:20,23:20:718:23:828:-61.4218,0,-51.6483	0/0:115:114,1:114:4046:1:36:0,-31.0212,-360.677	0/0:54:51,3:51:1806:3:108:0,-6.18045,-152.744	0/0:58:58,0:58:2052:0:0:0,-17.4597,-183.586	0/1:240:128,104:128:4538:104:3732:-265.435,0,-338.286	0/0:209:208,0:208:7332:0:0:0,-62.6142,-659.58	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.776	0/1:227:131,96:131:4640:96:3444:-241.658,0,-349.417	0/0:170:167,1:167:5846:1:36:0,-47.3096,-522.709	0/0:62:62,0:62:2189:0:0:0,-18.6639,-197.275	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686	0/1:12:4,8:4:136:8:288:-22.6532,0,-8.9626	0/0:12:11,0:11:393:0:0:0,-3.31133,-35.4885	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5387	0/1:180:89,86:89:3166:86:3083:-224.404,0,-232.075	0/0:53:53,0:53:1865:0:0:0,-15.9546,-168.125	0/1:37:28,9:28:972:9:320:-17.9969,0,-76.6518	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:106:54,52:54:1883:52:1860:-134.987,0,-137.833	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3808	0/0:101:101,0:101:3548:0:0:0,-30.404,-319.53	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.634	0/0:77:77,0:77:2731:0:0:0,-23.1793,-246.032	0/0:54:54,0:54:1899:0:0:0,-16.2556,-171.185	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.85	0/1:120:71,46:71:2519:46:1632:-111.555,0,-191.378	0/1:69:31,37:31:1104:37:1328:-98.9842,0,-78.8794	0/1:100:51,47:51:1798:47:1684:-121.721,0,-132.24	0/1:64:31,31:31:1081:31:1112:-81.2105,0,-78.5732	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:80:80,0:80:2829:0:0:0,-24.0824,-254.849	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.913	0/0:3:3,0:3:95:0:0:0,-0.90309,-8.86337	0/0:133:133,0:133:4709:0:0:0,-40.037,-423.97	0/0:58:58,0:58:2038:0:0:0,-17.4597,-183.689	0/0:4:4,0:4:134:0:0:0,-1.20412,-12.3905	0/1:11:8,3:8:281:3:108:-6.74963,0,-22.319	0/0:60:60,0:60:2073:0:0:0,-18.0618,-186.82	0/0:75:74,0:74:2601:0:0:0,-22.2762,-233.978	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:219:219,0:219:7740:0:0:0,-65.9256,-696.635	0/1:116:79,36:79:2794:36:1288:-81.2001,0,-216.721	0/0:32:31,1:31:1102:1:36:0,-6.03468,-95.8916	0/0:70:70,0:70:2473:0:0:0,-21.0721,-222.789	0/0:128:127,1:127:4478:1:36:0,-34.9336,-399.593	0/1:123:25,96:25:866:96:3448:-273.609,0,-41.4705	0/0:27:27,0:27:948:0:0:0,-8.12781,-85.6319	0/0:60:60,0:60:2109:0:0:0,-18.0618,-190.071	0/0:37:37,0:37:1265:0:0:0,-11.1381,-113.123	0/0:21:20,0:20:702:0:0:0,-6.0206,-63.1441	0/1:73:30,41:30:1035:41:1454:-109.336,0,-71.7237	0/1:69:20,48:20:716:48:1724:-133.999,0,-43.9382	0/0:116:116,0:116:4077:0:0:0,-34.9195,-367.12	0/0:203:203,0:203:7232:0:0:0,-61.1091,-650.933	0/1:30:17,11:17:585:11:392:-26.83,0,-44.1769	0/0:130:127,3:127:4490:3:108:0,-29.0615,-394.193	0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3652	0/1:101:52,49:52:1827:49:1752:-127.489,0,-134.304	0/1:110:59,49:59:2094:49:1756:-125.438,0,-155.877	0/1:213:104,102:104:3692:102:3653:-266.358,0,-270.105	0/1:53:23,29:23:802:29:1027:-76.7708,0,-56.5695	0/1:74:34,35:34:1196:35:1260:-92.5677,0,-86.8322	0/0:56:56,0:56:1947:0:0:0,-16.8577,-175.502	0/1:115:53,60:53:1872:60:2149:-159.155,0,-134.38	0/1:25:15,10:15:540:10:360:-25.1565,0,-41.4108	0/0:65:65,0:65:2313:0:0:0,-19.5669,-208.394	0/0:62:62,0:62:2179:0:0:0,-18.6639,-196.374	0/1:26:15,10:15:538:10:347:-23.6788,0,-40.8708	0/1:86:46,37:46:1613:37:1320:-93.0236,0,-120.11	0/1:70:19,50:19:666:50:1792:-140.403,0,-39.134	0/0:274:274,0:274:9623:0:0:0,-82.4822,-865.015	0/0:124:124,0:124:4423:0:0:0,-37.3277,-398.242
chr01	29929408	.	AACT	AACA	104866	PASS	AB=0.496519;ABP=3.34289;AC=148;AF=0.787234;AN=188;AO=4972;CIGAR=3M1X;DP=6588;DPB=6593.25;DPRA=10.1091;EPP=10799.6;EPPR=3470.85;GTI=2;LEN=1;MEANALT=1.2043;MQM=59.9358;MQMR=59.975;NS=94;NUMALT=1;ODDS=1.30517;PAIRED=0;PAIREDR=0;PAO=6.5;PQA=229;PQR=229;PRO=6.5;QA=177838;QR=55586;RO=1597;RPL=4972;RPP=10799.6;RPPR=3470.85;RPR=0;RUN=1;SAF=4972;SAP=10799.6;SAR=0;SRF=1597;SRP=3470.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1189:-107.083,-10.235,0	0/1:61:29,32:29:1005:32:1148:-85.2087,0,-72.3387	1/1:72:0,72:0:0:72:2569:-231.458,-21.6742,0	1/1:112:0,112:0:0:112:3987:-358.751,-33.7154,0	0/1:40:14,25:14:474:25:900:-69.3651,0,-31.0233	0/1:45:15,30:15:521:30:1080:-83.9669,0,-33.6708	0/1:92:42,50:42:1449:50:1796:-134.228,0,-103.006	1/1:98:0,98:0:0:98:3505:-315.601,-29.5009,0	1/1:60:0,60:0:0:60:2115:-190.616,-18.0618,0	1/1:57:0,57:0:0:57:2044:-184.173,-17.1587,0	1/1:46:0,46:0:0:46:1656:-148.073,-13.8474,0	1/1:69:0,69:0:0:69:2463:-221.909,-20.7711,0	0/1:76:40,36:40:1400:36:1288:-93.3453,0,-103.418	0/1:57:30,27:30:1066:27:963:-69.8226,0,-79.0931	0/1:44:27,17:27:951:17:612:-42.1681,0,-72.6598	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:37:0,36:0:0:36:1296:-116.669,-10.8371,0	0/1:44:25,19:25:859:19:657:-46.2051,0,-64.376	0/1:26:10,16:10:340:16:576:-44.3482,0,-23.1016	0/1:211:127,83:127:4433:83:2957:-202.787,0,-335.573	0/1:151:68,83:68:2346:83:2975:-222.524,0,-165.945	0/1:101:64,37:64:2222:37:1332:-89.7198,0,-169.778	1/1:43:1,42:1:36:42:1500:-131.696,-9.34602,0	1/1:53:3,50:3:108:50:1781:-150.496,-5.87942,0	1/1:51:0,51:0:0:51:1824:-164.382,-15.3525,0	0/1:163:62,100:62:2162:100:3588:-273.979,0,-145.699	1/1:177:0,177:0:0:177:6349:-571.422,-53.2823,0	1/1:20:0,20:0:0:20:711:-64.3156,-6.0206,0	0/1:205:91,113:91:3141:113:4068:-304.475,0,-221.077	1/1:52:0,52:0:0:52:1840:-165.878,-15.6536,0	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:4:2,2:2:69:2:72:-5.6326,0,-5.34854	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:136:69,66:69:2427:66:2359:-171.551,0,-177.777	1/1:185:0,184:0:0:184:6559:-590.152,-55.3895,0	0/1:67:40,27:40:1377:27:972:-67.6289,0,-104.054	0/0:7:7,0:7:242:0:0:0,-2.10721,-22.1166	0/1:63:27,36:27:950:36:1288:-97.2587,0,-66.8499	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:90:0,90:0:0:90:3225:-290.41,-27.0927,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:67:0,67:0:0:67:2395:-215.806,-20.169,0	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	0/1:85:38,46:38:1315:46:1652:-123.321,0,-93.0015	0/1:83:37,46:37:1310:46:1640:-122.814,0,-93.2161	0/1:102:47,54:47:1636:54:1936:-143.753,0,-116.763	0/1:131:58,73:58:2040:73:2616:-196.193,0,-144.377	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:92:1,91:1:36:91:3233:-287.59,-24.0965,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:15:0,15:0:0:15:525:-47.5789,-4.51545,0	1/1:66:0,66:0:0:66:2366:-213.169,-19.868,0	1/1:53:0,53:0:0:53:1882:-169.59,-15.9546,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:15:11,4:11:371:4:144:-8.79817,0,-29.1996	1/1:60:0,60:0:0:60:2143:-193.137,-18.0618,0	1/1:132:2,128:2:72:128:4557:-403.469,-32.6445,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:113:0,113:0:0:113:4045:-364.236,-34.0164,0	0/1:106:61,45:61:2121:45:1620:-114.173,0,-159.248	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:97:3,94:3:108:94:3354:-292.001,-19.1247,0	0/1:90:54,36:54:1870:36:1269:-87.4178,0,-141.482	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:152:0,151:0:0:151:5421:-486.72,-45.4555,0	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:123:53,70:53:1857:70:2489:-187.235,0,-130.383	0/1:34:30,4:30:1053:4:144:-3.0786,0,-84.8451	1/1:82:0,81:0:0:81:2904:-261.236,-24.3834,0	1/1:111:0,110:0:0:110:3948:-355.24,-33.1133,0	0/1:59:22,37:22:754:37:1328:-102.061,0,-50.4145	1/1:49:0,48:0:0:48:1720:-154.833,-14.4494,0	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	0/1:93:48,45:48:1673:45:1605:-116.742,0,-122.858	0/1:51:28,22:28:974:22:792:-56.2707,0,-72.6372	0/1:135:71,64:71:2488:64:2289:-165.57,0,-183.474	0/1:60:31,28:31:1067:28:1000:-72.1949,0,-78.215	0/1:40:23,17:23:784:17:612:-43.3722,0,-58.8315	1/1:30:0,30:0:0:30:1071:-96.7016,-9.0309,0	0/1:83:37,46:37:1296:46:1639:-122.812,0,-91.9548	0/1:28:18,9:18:643:9:324:-21.0358,0,-49.7318	1/1:62:0,62:0:0:62:2216:-199.704,-18.6639,0	1/1:111:0,111:0:0:111:3975:-357.94,-33.4143,0	0/1:98:49,48:49:1710:48:1728:-126.285,0,-124.628	0/1:92:43,49:43:1510:49:1756:-130.629,0,-108.498	0/1:66:39,27:39:1320:27:963:-67.06,0,-99.1657	1/1:120:0,120:0:0:120:4308:-387.893,-36.1236,0	1/1:66:0,66:0:0:66:2359:-212.568,-19.868,0
chr01	29953900	.	T	A	18942.2	PASS	AB=0.475397;ABP=15.9393;AC=39;AF=0.209677;AN=186;AO=1178;CIGAR=1X;DP=5429;DPB=5429;DPRA=1.28364;EPP=2561;EPPR=9231.77;GTI=0;LEN=1;MEANALT=1.02273;MQM=51.264;MQMR=59.7038;NS=93;NUMALT=1;ODDS=2.27029;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42138;QR=151275;RO=4250;RPL=0;RPP=2561;RPPR=9231.77;RPR=1178;RUN=1;SAF=1178;SAP=2561;SAR=0;SRF=4250;SRP=9231.77;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.923	0/1:52:35,17:35:1245:17:597:-37.9604,0,-96.691	0/0:124:124,0:124:4379:0:0:0,-37.3277,-394.219	0/0:113:113,0:113:3979:0:0:0,-34.0164,-358.282	0/1:25:18,7:18:648:7:252:-15.4453,0,-51.1261	0/1:18:8,10:8:288:10:360:-27.2434,0,-20.8489	0/1:74:36,38:36:1277:38:1368:-100.497,0,-92.9385	0/0:61:61,0:61:2150:0:0:0,-18.3628,-193.727	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.354	0/0:56:56,0:56:1974:0:0:0,-16.8577,-177.925	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.338	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.572	0/1:51:30,21:30:1076:21:756:-51.7805,0,-81.7058	0/1:56:26,30:26:917:30:1080:-80.1712,0,-65.9624	0/1:50:26,24:26:932:24:864:-62.6525,0,-69.1392	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.466	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7912	0/1:24:12,12:12:432:12:432:-31.8979,0,-31.9965	0/1:27:18,9:18:639:9:324:-21.3039,0,-49.7104	0/1:98:45,53:45:1612:53:1885:-138.712,0,-115.853	0/1:52:33,19:33:1184:19:684:-45.46,0,-91.2066	0/1:42:17,25:17:612:25:870:-65.7322,0,-42.7702	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.525	0/0:53:50,3:50:1766:3:108:0,-5.90475,-149.137	0/0:56:56,0:56:1981:0:0:0,-16.8577,-178.555	0/1:169:89,80:89:3170:80:2857:-205.219,0,-234.616	0/0:143:143,0:143:5087:0:0:0,-43.0473,-457.919	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:144:87,57:87:3117:57:2032:-139.05,0,-237.398	0/0:72:72,0:72:2557:0:0:0,-21.6742,-230.354	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.99	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.87105	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1743	0/1:108:53,54:53:1893:54:1936:-140.898,0,-138.061	0/0:141:141,0:141:5011:0:0:0,-42.4452,-450.807	0/1:26:11,15:11:392:15:540:-40.767,0,-27.7933	0/1:4:2,2:2:72:2:72:-5.61541,0,-5.6326	0/1:65:25,40:25:881:40:1436:-109.339,0,-60.0389	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:69:69,0:69:2416:0:0:0,-20.7711,-217.674	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.416	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.533	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.077	0/0:91:89,2:89:3139:2:72:0,-20.5742,-275.837	0/1:143:77,66:77:2745:66:2342:-166.743,0,-204.227	0/1:60:41,19:41:1453:19:684:-43.6729,0,-113.002	0/1:92:49,43:49:1741:43:1548:-111.501,0,-129.253	0/1:97:66,31:66:2334:31:1097:-69.5973,0,-181.073	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.127	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:37:37,0:37:1294:0:0:0,-11.1381,-116.749	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4729	0/1:18:7,11:7:252:11:396:-30.4737,0,-17.6104	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3128	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	.:.:.:.:.:.:.:.	0/0:156:154,2:154:5483:2:72:0,-40.1411,-486.743	0/1:84:47,37:47:1673:37:1308:-91.8616,0,-125.561	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.994	0/0:94:93,1:93:3313:1:36:0,-24.7076,-294.79	0/1:109:39,70:39:1385:70:2501:-191.352,0,-92.1343	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.272	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.228	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/1:90:45,45:45:1567:45:1616:-117.81,0,-114.194	0/1:72:29,43:29:1036:43:1548:-116.576,0,-71.8798	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.941	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.482	0/1:39:25,14:25:885:14:504:-33.843,0,-68.2264	0/0:54:53,1:53:1843:1:36:0,-12.6664,-162.539	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:64:23,41:23:813:41:1476:-112.804,0,-54.2232	0/1:58:32,26:32:1152:26:932:-66.5314,0,-86.5304	0/1:112:69,43:69:2446:43:1532:-104.095,0,-186.669	0/1:50:30,20:30:1076:20:720:-49.6031,0,-82.0932	0/1:29:18,11:18:648:11:392:-26.8046,0,-49.922	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.491	0/1:90:45,45:45:1601:45:1605:-115.214,0,-117.252	0/1:23:12,11:12:432:11:396:-28.6567,0,-32.2893	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.914	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.487	0/1:27:13,14:13:464:14:504:-37.4554,0,-33.9697	0/1:88:39,49:39:1388:49:1756:-130.451,0,-98.7158	0/1:25:9,16:9:324:16:576:-44.5181,0,-21.9801	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.274	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044
chr01	29959548	.	C	A	166.169	PASS	AB=0.416754;ABP=405.397;AC=65;AF=0.345745;AN=188;AO=3389;CIGAR=1X;DP=9496;DPB=9496;DPRA=12.3686;EPP=7362.13;EPPR=13244.6;GTI=60;LEN=1;MEANALT=1.07778;MQM=14.319;MQMR=54.2947;NS=94;NUMALT=1;ODDS=0.575194;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120356;QR=216064;RO=6098;RPL=0;RPP=7362.13;RPPR=13244.6;RPR=3389;RUN=1;SAF=0;SAP=7362.13;SAR=3389;SRF=0;SRP=13244.6;SRR=6098;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:40,34:40:1395:34:1199:-16.924,0,-102.143	0/0:227:178,47:178:6305:47:1671:0,-16.5566,-501.96	0/0:91:76,15:76:2692:15:536:0,-11.1878,-220.674	0/1:179:106,73:106:3756:73:2595:-44.1526,0,-280.892	0/0:70:52,18:52:1845:18:636:0,-2.29045,-141.262	0/1:44:16,28:16:576:28:985:-16.6718,0,-38.2909	0/1:148:88,60:88:3151:60:2140:-26.4252,0,-232.735	0/0:111:86,25:86:3058:25:891:0,-5.80022,-246.873	0/1:106:71,35:71:2526:35:1243:-8.27753,0,-194.445	0/1:91:58,33:58:2009:33:1153:-13.3858,0,-153.577	0/1:39:21,18:21:721:18:625:-10.7832,0,-52.9071	0/1:54:40,14:40:1416:14:504:-1.93199,0,-110.467	0/1:69:41,28:41:1442:28:1008:-9.08868,0,-106.247	0/1:67:30,37:30:1047:37:1315:-19.3454,0,-71.9224	0/1:66:30,36:30:1058:36:1271:-26.7736,0,-74.3336	0/1:56:27,29:27:963:29:1002:-14.0358,0,-68.4377	0/0:49:38,11:38:1368:11:387:0,-2.7767,-111.447	0/1:55:25,30:25:880:30:1068:-16.0081,0,-61.5776	0/1:25:15,10:15:523:10:356:-3.01341,0,-39.0028	0/1:188:111,77:111:3885:77:2739:-38.8904,0,-286.013	0/1:133:86,47:86:2999:47:1674:-6.4516,0,-226.034	0/1:163:102,61:102:3635:61:2164:-43.6332,0,-269.309	0/1:122:90,32:90:3202:32:1144:-7.17052,0,-246.096	0/1:118:73,45:73:2607:45:1604:-8.98669,0,-197.303	0/0:80:57,23:57:2004:23:812:0,-1.15283,-155.883	0/1:363:205,158:205:7248:158:5628:-130.65,0,-526.435	0/0:212:165,47:165:5864:47:1688:0,-12.9259,-471.586	0/0:36:26,10:26:928:10:356:0,-0.749621,-73.6644	0/1:296:185,111:185:6560:111:3953:-72.8161,0,-486.695	0/0:221:185,35:185:6576:35:1242:0,-31.8728,-545.072	0/1:102:67,35:67:2375:35:1256:-13.0891,0,-181.799	0/1:10:7,3:7:252:3:108:-4.72244,0,-20.0187	0/1:4:3,1:3:108:1:27:-1.49046,0,-8.87105	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.39318	0/1:15:8,7:8:288:7:252:-3.96987,0,-19.853	0/1:5:3,2:3:108:2:72:-0.771778,0,-8.57002	0/1:258:98,160:98:3466:160:5686:-172.9,0,-228.262	0/0:242:181,61:181:6415:61:2161:0,-7.78367,-503.419	0/1:40:22,18:22:779:18:636:-7.03395,0,-56.999	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.7888	0/0:221:175,46:175:6220:46:1640:0,-21.2067,-504.538	0/1:37:19,18:19:680:18:635:-9.276,0,-50.3045	0/1:170:110,59:110:3872:59:2085:-14.21,0,-295.42	0/1:66:29,37:29:1024:37:1295:-25.4185,0,-70.9499	0/1:68:31,37:31:1097:37:1320:-25.8323,0,-76.6643	0/1:111:47,64:47:1665:64:2286:-60.5668,0,-114.528	0/0:99:88,11:88:3140:11:388:0,-17.5537,-266.517	0/1:185:122,63:122:4325:63:2236:-22.2413,0,-323.435	0/1:128:72,55:72:2525:55:1946:-26.9562,0,-181.402	0/1:127:80,47:80:2834:47:1688:-17.7769,0,-210.778	0/1:250:122,126:122:4326:126:4475:-101.796,0,-306.844	0/1:7:5,2:5:180:2:72:-0.547806,0,-14.4449	0/0:146:130,16:130:4652:16:568:0,-20.254,-391.47	0/1:32:18,14:18:629:14:487:-13.3826,0,-46.2763	0/0:24:24,0:24:852:0:0:0,-7.22472,-74.4244	0/1:95:63,32:63:2219:32:1116:-6.20949,0,-166.538	0/0:67:58,9:58:2066:9:311:0,-8.73031,-174.771	0/1:8:3,5:3:108:5:176:-4.10294,0,-7.66693	0/0:20:16,4:16:576:4:144:0,-0.854954,-46.2156	0/1:63:44,19:44:1559:19:670:-0.161389,0,-121.428	0/1:110:64,46:64:2253:46:1637:-23.8599,0,-166.253	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.10491	0/1:284:195,89:195:6974:89:3166:-53.5814,0,-533.8	0/1:232:136,96:136:4813:96:3427:-48.6667,0,-350.716	0/0:57:41,16:41:1459:16:561:0,-1.3509,-113.145	0/1:52:34,18:34:1207:18:644:-13.0854,0,-92.1758	0/0:149:113,35:113:4026:35:1234:0,-3.5242,-318.229	0/1:130:78,52:78:2760:52:1856:-26.2894,0,-202.29	0/0:4:3,1:3:108:1:36:0,-0.105382,-8.97643	0/1:73:55,18:55:1936:18:637:-1.47768,0,-151.615	0/1:103:47,56:47:1680:56:1986:-52.4216,0,-116.956	0/0:21:20,1:20:712:1:36:0,-4.92425,-61.2904	0/1:129:89,40:89:3132:40:1423:-8.54983,0,-237.628	0/0:75:59,16:59:2073:16:572:0,-7.19114,-167.755	0/0:116:81,35:81:2856:35:1237:0,-0.0563468,-222.309	0/1:185:133,52:133:4745:52:1864:-14.8,0,-367.079	0/0:95:68,27:68:2404:27:959:0,-1.07915,-182.13	0/0:113:90,23:90:3161:23:828:0,-8.6541,-254.772	0/1:14:10,4:10:360:4:144:-0.219598,0,-28.5299	0/0:128:91,37:91:3247:37:1309:0,-1.14634,-247.082	0/0:127:93,34:93:3267:34:1203:0,-0.713084,-249.74	0/1:183:116,67:116:4104:67:2405:-18.8024,0,-307.159	0/1:145:60,85:60:2131:85:3010:-61.8992,0,-144.585	0/1:53:20,33:20:704:33:1180:-25.1271,0,-45.6803	0/1:92:39,53:39:1374:53:1876:-41.4289,0,-96.2624	0/1:144:70,74:70:2454:74:2631:-45.9543,0,-174.388	0/1:47:31,16:31:1107:16:567:-1.8664,0,-82.9749	0/1:54:37,17:37:1311:17:599:-5.15769,0,-99.7624	0/1:52:34,18:34:1212:18:611:-4.92105,0,-91.5311	0/1:18:8,10:8:276:10:360:-4.30767,0,-19.7104	0/1:48:22,26:22:762:26:924:-16.415,0,-53.1982	0/1:77:29,47:29:1040:47:1671:-36.9132,0,-66.685	0/1:128:93,35:93:3327:35:1239:-9.036,0,-259.111	0/1:95:61,34:61:2158:34:1199:-15.9072,0,-163.836
chr01	29959603	.	G	A	214.433	PASS	AB=0.40692;ABP=540.249;AC=67;AF=0.356383;AN=188;AO=3423;CIGAR=1X;DP=9704;DPB=9704;DPRA=12.6405;EPP=7435.96;EPPR=13637.7;GTI=62;LEN=1;MEANALT=1.02222;MQM=14.6348;MQMR=53.9135;NS=94;NUMALT=1;ODDS=0.888765;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122663;QR=224710;RO=6279;RPL=3423;RPP=7435.96;RPPR=13637.7;RPR=0;RUN=1;SAF=0;SAP=7435.96;SAR=3423;SRF=0;SRP=13637.7;SRR=6279;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:41,34:41:1472:34:1224:-16.6413,0,-108.399	0/0:233:183,50:183:6536:50:1788:0,-9.96312,-512.692	0/0:97:81,16:81:2900:16:576:0,-11.9137,-233.201	0/1:186:109,77:109:3916:77:2768:-50.9258,0,-292.767	0/0:71:54,17:54:1928:17:597:0,-3.69131,-147.066	0/1:46:16,30:16:576:30:1080:-19.235,0,-37.6888	0/1:149:89,60:89:3196:60:2156:-26.1524,0,-236.395	0/0:115:88,27:88:3159:27:968:0,-2.78122,-251.841	0/1:108:73,35:73:2616:35:1256:-7.78338,0,-201.43	0/1:93:60,33:60:2152:33:1184:-12.8353,0,-165.014	0/1:39:21,18:21:756:18:648:-10.8569,0,-55.7678	0/1:56:43,13:43:1544:13:464:-0.4068,0,-117.92	0/1:70:42,28:42:1499:28:1008:-8.51755,0,-108.677	0/1:67:31,36:31:1108:36:1288:-18.2768,0,-74.2783	0/1:66:32,34:32:1144:34:1220:-21.7653,0,-80.3561	0/1:55:26,29:26:932:29:1040:-14.3921,0,-66.2241	0/0:49:39,10:39:1404:10:360:0,-3.84518,-113.588	0/1:52:26,26:26:932:26:936:-12.6913,0,-60.8806	0/1:27:17,10:17:612:10:360:-2.14215,0,-44.0345	0/1:195:116,79:116:4136:79:2825:-40.2975,0,-302.063	0/1:133:84,48:84:3008:48:1716:-7.50398,0,-227.05	0/1:164:105,59:105:3745:59:2112:-41.159,0,-274.01	0/1:123:91,32:91:3260:32:1152:-8.86094,0,-251.868	0/1:124:79,45:79:2820:45:1620:-8.34107,0,-214.471	0/0:81:58,23:58:2080:23:824:0,-1.44106,-161.689	0/1:374:209,165:209:7488:165:5887:-144.255,0,-541.101	0/0:221:171,50:171:6132:50:1792:0,-7.27062,-484.817	0/0:36:27,9:27:968:9:324:0,-1.82743,-75.5936	0/1:304:194,110:194:6925:110:3936:-69.0139,0,-514.233	0/0:224:191,33:191:6845:33:1184:0,-34.7801,-568.33	0/1:108:71,37:71:2513:37:1328:-15.7817,0,-190.666	0/1:10:7,3:7:252:3:108:-4.72244,0,-20.0187	0/1:4:3,1:3:108:1:36:-2.3545,0,-8.87105	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.34904	0/1:15:8,7:8:284:7:248:-3.95844,0,-19.8113	0/1:5:3,2:3:104:2:72:-0.771778,0,-8.19766	0/1:260:101,159:101:3612:159:5689:-174.394,0,-237.52	0/0:249:188,61:188:6729:61:2192:0,-9.67037,-525.604	0/1:40:22,18:22:788:18:648:-8.45268,0,-57.6509	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.0961	0/0:228:180,48:180:6429:48:1724:0,-19.4645,-515.954	0/1:39:21,18:21:752:18:648:-8.68568,0,-56.1796	0/1:179:119,60:119:4260:60:2156:-13.799,0,-323.285	0/1:69:29,40:29:1040:40:1440:-28.3266,0,-71.1786	0/1:68:32,36:32:1148:36:1296:-24.6751,0,-80.4244	0/1:114:48,66:48:1701:66:2372:-61.6012,0,-116.891	0/0:110:97,13:97:3468:13:453:0,-14.4501,-288.136	0/1:187:125,62:125:4465:62:2224:-20.8282,0,-330.146	0/1:129:71,58:71:2528:58:2073:-32.9312,0,-180.807	0/1:128:79,49:79:2832:49:1764:-19.9947,0,-210.271	0/1:252:122,130:122:4376:130:4668:-109.008,0,-308.965	0/1:7:5,2:5:180:2:72:-0.547806,0,-14.4449	0/0:149:133,16:133:4765:16:576:0,-18.8147,-394.678	0/1:31:17,14:17:612:14:504:-13.7224,0,-45.0566	0/0:24:24,0:24:864:0:0:0,-7.22472,-75.5066	0/1:96:65,31:65:2316:31:1097:-6.24666,0,-174.665	0/0:68:60,8:60:2156:8:288:0,-10.2692,-184.106	0/1:8:3,5:3:108:5:180:-5.27749,0,-7.66693	0/0:20:16,4:16:572:4:144:0,-0.854954,-45.9844	0/0:65:46,19:46:1644:19:684:0,-0.398129,-128.872	0/1:117:69,48:69:2480:48:1679:-24.365,0,-181.271	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.10491	0/1:287:197,90:197:7080:90:3228:-54.4532,0,-540.15	0/1:231:134,97:134:4792:97:3472:-51.4544,0,-347.467	0/1:59:42,17:42:1512:17:604:-0.388571,0,-115.962	0/1:51:34,17:34:1224:17:608:-12.1309,0,-94.0086	0/0:155:121,34:121:4348:34:1224:0,-4.22723,-333.771	0/1:127:74,52:74:2656:52:1845:-27.1564,0,-194.146	0/0:4:3,1:3:108:1:36:0,-0.105382,-8.97643	0/1:76:57,19:57:2044:19:680:-1.68663,0,-159.974	0/1:107:53,54:53:1904:54:1940:-48.9052,0,-128.045	0/0:21:20,1:20:716:1:36:0,-4.92425,-61.6514	0/1:134:92,42:92:3269:42:1508:-11.4235,0,-247.482	0/0:75:59,16:59:2105:16:561:0,-7.24166,-170.261	0/1:117:82,35:82:2940:35:1256:-1.93111,0,-228.652	0/1:192:139,53:139:4957:53:1908:-15.2414,0,-382.797	0/1:98:70,28:70:2500:28:1000:-0.1416,0,-185.229	0/0:117:95,22:95:3400:22:773:0,-11.2908,-278.781	0/0:15:11,4:11:392:4:144:0,-0.0814322,-30.3227	0/0:128:92,36:92:3296:36:1292:0,-2.01674,-251.443	0/1:127:92,35:92:3276:35:1256:-2.2329,0,-247.549	0/1:188:118,70:118:4236:70:2516:-25.5569,0,-316.332	0/1:148:61,87:61:2176:87:3124:-64.0955,0,-144.53	0/1:53:24,29:24:864:29:1044:-19.3018,0,-54.2253	0/1:94:40,54:40:1440:54:1932:-42.3673,0,-101.556	0/1:149:73,76:73:2589:76:2728:-46.904,0,-181.657	0/1:48:33,15:33:1180:15:540:-1.38812,0,-87.4224	0/1:57:39,18:39:1400:18:644:-6.14641,0,-106.569	0/1:54:36,18:36:1279:18:640:-4.51074,0,-96.3377	0/1:18:8,10:8:279:10:360:-4.30767,0,-20.0138	0/1:47:22,25:22:792:25:900:-15.6431,0,-55.8288	0/1:72:25,47:25:892:47:1692:-39.1743,0,-55.5908	0/1:134:97,37:97:3488:37:1328:-12.5206,0,-270.981	0/1:99:66,33:66:2345:33:1188:-13.8238,0,-177.409
chr01	29959604	.	T	G	15334.5	PASS	AB=0.293067;ABP=1773.44;AC=38;AF=0.202128;AN=188;AO=1409;CIGAR=1X;DP=9594;DPB=9594;DPRA=1.43835;EPP=3062.61;EPPR=17720.1;GTI=3;LEN=1;MEANALT=1.2;MQM=40.2342;MQMR=39.7361;NS=94;NUMALT=1;ODDS=1.06214;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50437;QR=289081;RO=8159;RPL=1409;RPP=3062.61;RPPR=17720.1;RPR=0;RUN=1;SAF=0;SAP=3062.61;SAR=1409;SRF=0;SRP=17720.1;SRR=8159;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:75:75,0:75:2661:0:0:0,-22.5772,-166.558	0/1:226:145,81:145:5015:81:2908:-182.417,0,-278.485	0/0:93:93,0:93:3279:0:0:0,-27.9958,-253.452	0/0:185:185,0:185:6593:0:0:0,-55.6905,-447.269	0/1:73:36,36:36:1239:36:1284:-88.4297,0,-50.7793	0/0:46:42,4:42:1512:4:140:0,-1.39157,-59.5558	0/1:146:113,32:113:4049:32:1129:-53.4419,0,-198.422	0/0:114:114,0:114:4020:0:0:0,-34.3174,-306.42	0/0:105:105,0:105:3715:0:0:0,-31.6081,-260.857	0/0:89:89,0:89:3177:0:0:0,-26.7917,-220.944	0/0:38:38,0:38:1349:0:0:0,-11.4391,-86.1987	0/0:54:53,0:53:1900:0:0:0,-15.9546,-141.576	0/1:70:53,17:53:1908:17:608:-30.4268,0,-87.5187	0/1:66:52,13:52:1853:13:468:-21.142,0,-69.6863	0/1:64:55,9:55:1972:9:324:-8.83576,0,-88.3775	0/0:54:53,0:53:1892:0:0:0,-15.9546,-106.8	0/0:49:49,0:49:1756:0:0:0,-14.7505,-134.511	0/1:54:41,12:41:1476:12:432:-21.6694,0,-54.6057	0/1:26:19,7:19:680:7:252:-14.0241,0,-29.6224	0/1:192:137,55:137:4859:55:1976:-111.193,0,-224.855	0/1:129:97,31:97:3457:31:1108:-57.3279,0,-166.982	0/1:165:87,75:87:3102:75:2680:-183.231,0,-129.903	0/0:123:123,0:123:4276:0:0:0,-37.0267,-321.209	0/0:123:117,6:117:4177:6:212:0,-18.1399,-253.351	0/0:82:82,0:82:2898:0:0:0,-24.6845,-206.038	0/1:370:257,113:257:9196:113:4052:-237.603,0,-435.681	0/0:219:219,0:219:7776:0:0:0,-65.9256,-589.959	0/0:31:30,0:30:996:0:0:0,-9.0309,-69.8039	0/1:306:196,110:196:6983:110:3944:-250.181,0,-334.603	0/0:218:218,0:218:7604:0:0:0,-65.6245,-597.214	0/0:103:103,0:103:3680:0:0:0,-31.0061,-257.972	0/0:10:10,0:10:341:0:0:0,-3.0103,-28.7339	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.79905	1/1:3:0,3:0:0:3:108:-9.65906,-0.90309,0	0/0:15:15,0:15:517:0:0:0,-4.51545,-32.1817	0/0:6:6,0:6:212:0:0:0,-1.80618,-14.1545	0/1:261:209,52:209:7508:52:1872:-82.954,0,-330.142	0/0:246:244,0:244:8632:0:0:0,-73.4513,-634.093	0/1:41:29,12:29:1029:12:432:-25.2591,0,-40.1614	0/1:4:2,2:2:72:2:72:-5.4092,0,-5.6326	0/1:226:147,79:147:5226:79:2825:-173.688,0,-291.805	0/0:35:35,0:35:1203:0:0:0,-10.536,-71.1684	0/0:170:170,0:170:6049:0:0:0,-51.1751,-419.883	0/0:68:68,0:68:2428:0:0:0,-20.47,-137.178	0/0:68:68,0:68:2406:0:0:0,-20.47,-140.652	0/0:113:113,0:113:4021:0:0:0,-34.0164,-242.886	0/0:108:108,0:108:3751:0:0:0,-32.5112,-306.33	0/1:188:142,46:142:5015:46:1639:-82.8023,0,-262.053	0/1:128:90,38:90:3194:38:1355:-76.6679,0,-135.615	0/1:133:86,47:86:3069:47:1684:-104.944,0,-134.087	0/1:250:196,54:196:7036:54:1936:-93.1838,0,-317.994	0/0:7:7,0:7:248:0:0:0,-2.10721,-18.6397	0/0:145:144,0:144:4949:0:0:0,-43.3483,-416.033	0/0:32:32,0:32:1121:0:0:0,-9.63296,-77.6305	0/0:23:23,0:23:794:0:0:0,-6.92369,-69.1968	0/0:96:96,0:96:3383:0:0:0,-28.8989,-234.686	0/0:66:66,0:66:2300:0:0:0,-19.868,-189.398	0/0:9:9,0:9:316:0:0:0,-2.70927,-18.4122	0/1:17:11,6:11:396:6:216:-14.2313,0,-22.8574	0/0:64:64,0:64:2257:0:0:0,-19.2659,-160.934	0/0:115:114,0:114:4068:0:0:0,-34.3174,-268.087	0/0:3:3,0:3:104:0:0:0,-0.90309,-8.73254	0/0:289:289,0:289:10173:0:0:0,-86.9977,-754.677	0/1:231:167,63:167:5932:63:2264:-126.217,0,-265.739	0/0:59:59,0:59:1995:0:0:0,-17.7608,-142.161	0/0:49:49,0:49:1737:0:0:0,-14.7505,-126.819	0/0:149:145,0:145:5150:0:0:0,-43.6493,-394.151	0/1:128:77,51:77:2760:51:1832:-118.939,0,-106.854	0/0:4:4,0:4:140:0:0:0,-1.20412,-10.6325	0/0:75:75,0:75:2669:0:0:0,-22.5772,-202.271	0/0:106:102,0:102:3656:0:0:0,-30.7051,-231.612	0/0:20:20,0:20:697:0:0:0,-6.0206,-59.3399	0/1:132:101,31:101:3620:31:1101:-55.2174,0,-199.452	0/1:75:49,26:49:1756:26:932:-57.551,0,-99.1253	0/0:118:118,0:118:4159:0:0:0,-35.5215,-295.363	0/0:188:188,0:188:6623:0:0:0,-56.5936,-492.406	0/1:99:58,41:58:2034:41:1448:-93.6649,0,-90.8343	0/0:112:112,0:112:3944:0:0:0,-33.7154,-302.852	0/0:14:14,0:14:496:0:0:0,-4.21442,-36.6258	0/1:127:83,44:83:2829:44:1568:-97.1437,0,-134.779	0/1:129:75,54:75:2669:54:1940:-127.591,0,-127.275	0/1:187:143,44:143:5106:44:1584:-79.7273,0,-254.721	0/1:147:120,27:120:4289:27:972:-39.4099,0,-168.048	0/1:53:37,15:37:1328:15:536:-29.9325,0,-40.1004	0/0:92:92,0:92:3274:0:0:0,-27.6948,-194.772	0/1:147:120,27:120:4293:27:956:-38.5434,0,-185.386	0/1:45:29,16:29:1032:16:572:-36.2009,0,-47.5325	0/0:56:56,0:56:1965:0:0:0,-16.8577,-139.653	0/0:54:54,0:54:1932:0:0:0,-16.2556,-133.013	0/0:17:16,1:16:572:1:32:0,-1.96898,-26.1019	0/1:47:34,13:34:1220:13:468:-26.7335,0,-42.6803	0/1:78:62,16:62:2212:16:576:-26.4525,0,-81.8074	0/0:129:129,0:129:4590:0:0:0,-38.8329,-343.616	0/0:98:97,0:97:3462:0:0:0,-29.1999,-244.191
chr01	30015794	.	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chr01	30042632	.	GG	AG,AT	105727	PASS	AB=0.511238,0.486999;ABP=5.4995,6.34168;AC=150,38;AF=0.797872,0.202128;AN=188;AO=3786,1109;CIGAR=1X1M,2X;DP=4902;DPB=4902;DPRA=0,1.42615;EPP=8224.2,2411.17;EPPR=7.35324;GTI=1;LEN=1,2;MEANALT=1.47872,2.04762;MQM=59.5193,53.8431;MQMR=60;NS=94;NUMALT=2;ODDS=0.041476;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=135554,39385;QR=61;RO=2;RPL=0,0;RPP=8224.2,2411.17;RPPR=7.35324;RPR=3786,1109;RUN=1,1;SAF=3786,1109;SAP=8224.2,2411.17;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43,0:0:0:43,0:1544,0:-139.046,-12.9443,0,-139.046,-12.9443,-139.046	1/2:26:0,17,9:0:0:17,9:608,324:-76.1798,-26.6031,-21.4856,-49.9341,0,-47.2249	1/1:127:0,127,0:0:0:127,0:4544,0:-408.807,-38.2308,0,-408.807,-38.2308,-408.807	1/1:129:0,128,0:0:0:128,0:4581,0:-412.067,-38.5318,0,-412.067,-38.5318,-412.067	1/2:32:0,17,15:0:0:17,15:612,538:-94.098,-44.1655,-39.048,-50.2913,0,-45.7759	1/2:18:0,8,10:0:0:8,10:284,360:-52.5938,-29.4626,-27.0543,-23.4869,0,-20.4766	1/2:26:0,16,10:0:0:16,10:572,352:-75.6265,-28.9857,-24.1692,-46.9946,0,-43.9843	1/1:108:0,107,1:0:0:107,1:3840,32:-345.459,-32.2102,0,-342.968,-29.4085,-342.667	1/1:57:0,57,0:0:0:57,0:2048,0:-184.567,-17.1587,0,-184.567,-17.1587,-184.567	1/1:61:0,61,0:0:0:61,0:2184,0:-196.813,-18.3628,0,-196.813,-18.3628,-196.813	1/1:22:0,22,0:0:0:22,0:788,0:-71.2167,-6.62266,0,-71.2167,-6.62266,-71.2167	1/1:53:0,53,0:0:0:53,0:1900,0:-171.253,-15.9546,0,-171.253,-15.9546,-171.253	1/2:42:0,24,18:0:0:24,18:864,646:-123.386,-52.9028,-45.678,-70.8415,0,-65.4229	1/2:18:0,10,8:0:0:10,8:358,288:-52.6141,-23.6954,-20.6851,-29.2751,0,-26.8668	1/2:33:0,17,16:0:0:17,16:612,563:-96.0421,-46.1016,-40.9841,-50.2959,0,-45.4794	1/1:22:0,22,0:0:0:22,0:788,0:-71.233,-6.62266,0,-71.233,-6.62266,-71.233	1/1:26:0,26,0:0:0:26,0:936,0:-84.3609,-7.82678,0,-84.3609,-7.82678,-84.3609	1/2:21:0,13,8:0:0:13,8:468,286:-61.6121,-23.4302,-19.5169,-38.538,0,-36.1298	1/2:10:0,3,7:0:0:3,7:108,252:-29.4929,-20.6795,-19.7764,-9.17208,0,-7.06487	1/2:82:0,37,41:0:0:37,41:1324,1454:-226.155,-118.299,-107.161,-107.881,0,-95.5383	1/2:84:0,45,39:0:0:45,39:1616,1381:-244.165,-112.351,-98.8047,-132.17,0,-120.43	1/2:53:0,13,40:0:0:13,40:468,1396:-151.76,-113.572,-109.658,-38.5453,0,-26.5041	1/1:77:0,76,1:0:0:76,1:2732,36:-245.542,-22.8783,0,-242.607,-19.5836,-242.306	1/1:10:0,10,0:0:0:10,0:360,0:-32.7434,-3.0103,0,-32.7434,-3.0103,-32.7434	1/1:43:0,43,0:0:0:43,0:1540,0:-138.813,-12.9443,0,-138.813,-12.9443,-138.813	1/2:172:0,92,80:0:0:92,80:3289,2853:-500.17,-232.018,-204.324,-268.507,0,-244.425	1/1:105:0,105,0:0:0:105,0:3753,0:-337.77,-31.6082,0,-337.77,-31.6082,-337.77	1/1:21:0,21,0:0:0:21,0:752,0:-67.9491,-6.32163,0,-67.9491,-6.32163,-67.9491	1/2:104:0,65,39:0:0:65,39:2313,1391:-302.022,-113.546,-93.9791,-188.832,0,-177.092	1/1:79:0,79,0:0:0:79,0:2825,0:-254.476,-23.7814,0,-254.476,-23.7814,-254.476	1/1:63:0,63,0:0:0:63,0:2254,0:-203.108,-18.9649,0,-203.108,-18.9649,-203.108	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:4:0,3,1:0:0:3,1:108,36:-12.1011,-3.2882,-2.38511,-9.17208,0,-8.87105	1/1:10:0,10,0:0:0:10,0:360,0:-32.6826,-3.0103,0,-32.6826,-3.0103,-32.6826	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/2:108:0,53,55:0:0:53,55:1904,1923:-311.766,-156.508,-140.553,-155.613,0,-139.056	1/1:105:0,104,1:0:0:104,1:3713,36:-333.968,-31.3071,0,-331.039,-28.0189,-330.738	1/2:27:0,18,9:0:0:18,9:648,324:-79.2321,-26.355,-20.9365,-53.2333,0,-50.5241	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:98:0,59,39:0:0:59,39:2124,1386:-286.169,-112.864,-95.1029,-173.661,0,-161.921	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:84:1,83,0:1:36:83,0:2984,0:-265.189,-21.6882,0,-265.49,-24.9855,-268.427	1/1:24:0,24,0:0:0:24,0:864,0:-78.0684,-7.22472,0,-78.0684,-7.22472,-78.0684	1/1:32:0,32,0:0:0:32,0:1145,0:-103.349,-9.63296,0,-103.349,-9.63296,-103.349	1/1:93:0,93,0:0:0:93,0:3336,0:-300.442,-27.9958,0,-300.442,-27.9958,-300.442	1/1:101:0,101,0:0:0:101,0:3594,0:-323.362,-30.404,0,-323.362,-30.404,-323.362	1/2:138:0,66,72:0:0:66,72:2356,2537:-398.232,-206.276,-186.408,-192.309,0,-170.635	1/2:65:0,33,32:0:0:33,32:1184,1120:-187.353,-90.7736,-80.8396,-96.932,0,-87.299	1/2:39:0,21,18:0:0:21,18:756,647:-114.712,-53.0329,-46.7112,-62.0385,0,-56.62	1/2:67:0,43,24:0:0:43,24:1548,860:-196.729,-70.42,-57.4757,-126.668,0,-119.443	1/1:5:0,5,0:0:0:5,0:180,0:-16.4641,-1.50515,0,-16.4641,-1.50515,-16.4641	1/1:87:0,87,0:0:0:87,0:3093,0:-278.514,-26.1896,0,-278.514,-26.1896,-278.514	1/1:50:1,49,0:1:25:49,0:1752,0:-155.462,-12.5516,0,-155.763,-14.7505,-157.709	1/1:7:0,7,0:0:0:7,0:244,0:-22.2994,-2.10721,0,-22.2994,-2.10721,-22.2994	1/1:72:0,72,0:0:0:72,0:2553,0:-229.955,-21.6742,0,-229.955,-21.6742,-229.955	1/1:28:0,28,0:0:0:28,0:999,0:-89.95,-8.42884,0,-89.95,-8.42884,-89.95	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.806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chr01	30248588	.	TCTAT	TCTAC,CCTAC	137284	PASS	AB=0.501794,0.491431;ABP=3.0804,4.61056;AC=146,38;AF=0.793478,0.206522;AN=184;AO=4187,1240;CIGAR=4M1X,1X3M1X;DP=5463;DPB=5464;DPRA=0,1.30271;EPP=4136.08,663.201;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=1.83696,2.4186;MQM=59.9635,51.8427;MQMR=60;NS=92;NUMALT=2;ODDS=0.770511;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=90,90;PQR=0;PRO=0;QA=149034,42639;QR=31;RO=1;RPL=3505,927;RPP=4136.08,663.201;RPPR=5.18177;RPR=682,313;RUN=1,1;SAF=4187,1240;SAP=9094.97,2695.64;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/2:113:0,58,55:0:0:58,55:2076,1915:-322.733,-153.434,-135.974,-169.649,0,-153.092	1/1:91:0,91,0:0:0:91,0:3211,0:-289.213,-27.3937,0,-289.213,-27.3937,-289.213	1/1:118:0,118,0:0:0:118,0:4207,0:-378.798,-35.5215,0,-378.798,-35.5215,-378.798	1/2:33:0,13,19:0:0:13,19:442,661:-89.3886,-53.5394,-49.6261,-35.8765,0,-30.157	1/2:28:0,12,16:0:0:12,16:423,546:-78.5057,-44.0623,-40.45,-34.6824,0,-29.8659	1/2:46:0,24,20:0:0:24,20:842,679:-123.416,-54.8836,-47.6589,-68.61,0,-62.5894	1/1:118:0,117,0:0:0:117,0:4156,0:-373.973,-35.2205,0,-373.973,-35.2205,-373.973	1/1:52:0,52,0:0:0:52,0:1839,0:-165.788,-15.6536,0,-165.788,-15.6536,-165.788	1/1:79:0,78,0:0:0:78,0:2792,0:-251.161,-23.4803,0,-251.161,-23.4803,-251.161	1/1:30:0,30,0:0:0:30,0:1037,0:-93.6342,-9.0309,0,-93.6342,-9.0309,-93.6342	1/1:33:0,33,0:0:0:33,0:1170,0:-105.607,-9.93399,0,-105.607,-9.93399,-105.607	1/2:31:0,13,18:0:0:13,18:468,603:-87.0901,-48.8925,-44.9791,-38.5463,0,-33.1277	1/2:47:0,29,18:0:0:29,18:1021,617:-133.428,-50.3033,-41.5734,-83.4704,0,-78.0518	1/2:31:0,12,18:0:0:12,18:428,602:-83.6739,-48.7728,-45.1604,-35.0184,0,-29.5998	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/1:47:0,45,0:0:0:45,0:1601,0:-144.082,-13.5464,0,-144.082,-13.5464,-144.082	1/2:23:0,18,5:0:0:18,5:640,177:-66.699,-14.5385,-9.11992,-52.5108,0,-51.0056	1/2:18:0,7,11:0:0:7,11:252,381:-51.6492,-31.0811,-28.9739,-20.9217,0,-17.6104	1/2:88:0,54,33:0:0:54,33:1897,1136:-246.451,-92.0485,-75.7929,-154.332,0,-144.398	1/2:50:0,26,24:0:0:26,24:932,822:-142.927,-66.9044,-59.0776,-76.3721,0,-69.1474	1/2:67:0,21,45:0:0:21,45:756,1560:-187.889,-126.198,-119.877,-61.6802,0,-48.1339	1/1:43:0,43,0:0:0:43,0:1540,0:-138.893,-12.9443,0,-138.893,-12.9443,-138.893	1/1:58:0,57,1:0:0:57,1:2040,36:-183.513,-17.1587,0,-180.584,-13.8705,-180.283	1/1:68:0,65,1:0:0:65,1:2309,31:-207.774,-19.567,0,-205.289,-17.0728,-204.988	1/2:225:1,121,100:1:31:121,100:4328,3399:-625.135,-272.512,-238.576,-350.458,0,-322.843	1/1:109:0,108,0:0:0:108,0:3861,0:-347.325,-32.5112,0,-347.325,-32.5112,-347.325	1/1:15:0,15,0:0:0:15,0:521,0:-47.2163,-4.51545,0,-47.2163,-4.51545,-47.2163	1/2:166:0,92,74:0:0:92,74:3290,2587:-478.821,-210.549,-182.854,-268.625,0,-246.349	1/1:120:0,119,0:0:0:119,0:4233,0:-380.9,-35.8226,0,-380.9,-35.8226,-380.9	1/1:73:0,73,0:0:0:73,0:2607,0:-234.878,-21.9752,0,-234.878,-21.9752,-234.878	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:5:0,3,2:0:0:3,2:104,72:-14.644,-6.1976,-5.29451,-8.79971,0,-8.19765	.:.:.:.:.:.:.:.	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/2:90:0,37,53:0:0:37,53:1332,1819:-255.783,-147.091,-135.953,-109.044,0,-93.0897	1/1:148:0,148,0:0:0:148,0:5291,0:-476.325,-44.5524,0,-476.325,-44.5524,-476.325	1/2:38:0,17,20:0:0:17,20:604,677:-103.465,-54.2364,-49.1188,-49.2889,0,-43.2683	.:.:.:.:.:.:.:.	1/2:132:0,68,64:0:0:68,64:2424,2227:-377.774,-180.179,-159.709,-197.946,0,-178.68	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:102:0,101,0:0:0:101,0:3608,0:-324.567,-30.404,0,-324.567,-30.404,-324.567	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/1:25:0,25,0:0:0:25,0:891,0:-80.5088,-7.52575,0,-80.5088,-7.52575,-80.5088	1/1:60:0,60,0:0:0:60,0:2140,0:-192.868,-18.0618,0,-192.868,-18.0618,-192.868	1/1:58:0,55,3:0:0:55,3:1968,108:-177.037,-16.5567,0,-168.259,-7.42099,-167.356	1/2:111:0,64,45:0:0:64,45:2284,1543:-311.352,-125.143,-105.877,-186.264,0,-172.718	1/2:66:0,29,37:0:0:29,37:1032,1299:-189.114,-105.002,-96.2723,-84.4636,0,-73.3255	1/2:87:0,38,49:0:0:38,49:1341,1667:-243.683,-134.481,-123.042,-109.49,0,-94.7398	1/2:112:0,65,47:0:0:65,47:2285,1638:-319.17,-133.177,-113.61,-186.342,0,-172.194	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:76:0,75,1:0:0:75,1:2663,36:-239.558,-22.5773,0,-236.639,-19.2995,-236.338	1/1:68:0,68,0:0:0:68,0:2421,0:-218.144,-20.47,0,-218.144,-20.47,-218.144	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:82:0,82,0:0:0:82,0:2914,0:-262.495,-24.6845,0,-262.495,-24.6845,-262.495	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:20:0,9,11:0:0:9,11:320,383:-57.5516,-31.4705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chr01	30260737	.	T	A	92818.9	PASS	AB=0.470166;ABP=26.7209;AC=150;AF=0.797872;AN=188;AO=4652;CIGAR=1X;DP=6290;DPB=6290;DPRA=0;EPP=10104.7;EPPR=3555.54;GTI=4;LEN=1;MEANALT=1.02128;MQM=43.0254;MQMR=59.662;NS=94;NUMALT=1;ODDS=0.552163;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165280;QR=58182;RO=1636;RPL=0;RPP=10104.7;RPPR=3555.54;RPR=4652;RUN=1;SAF=0;SAP=10104.7;SAR=4652;SRF=0;SRP=3555.54;SRR=1636;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1335:-114.893,-11.4391,0	0/1:55:20,35:20:696:35:1244:-91.9204,0,-46.4031	1/1:154:0,154:0:0:154:5446:-471.757,-46.3586,0	1/1:148:0,148:0:0:148:5259:-461.376,-44.5524,0	0/1:18:12,6:12:432:6:212:-13.6223,0,-33.8027	0/1:35:14,21:14:500:21:747:-54.2998,0,-34.8001	0/1:107:63,44:63:2236:44:1553:-105.065,0,-169.224	1/1:52:0,52:0:0:52:1860:-160.533,-15.6536,0	1/1:78:0,78:0:0:78:2756:-237.782,-23.4803,0	1/1:74:0,74:0:0:74:2629:-230.44,-22.2762,0	1/1:83:0,83:0:0:83:2958:-260.947,-24.9855,0	1/1:99:0,99:0:0:99:3510:-302.445,-29.802,0	0/1:68:37,31:37:1319:31:1105:-74.9914,0,-98.5173	0/1:43:21,22:21:752:22:776:-55.0417,0,-55.0604	0/1:53:33,20:33:1171:20:716:-47.9389,0,-89.4508	1/1:40:0,40:0:0:40:1436:-126.33,-12.0412,0	1/1:26:0,26:0:0:26:919:-80.2653,-7.82678,0	0/1:28:13,15:13:442:15:536:-38.1597,0,-31.6721	0/1:20:6,13:6:216:13:460:-34.437,0,-13.7502	0/1:116:62,54:62:2204:54:1914:-134.985,0,-163.616	0/1:97:44,53:44:1571:53:1874:-134.73,0,-112.475	0/1:70:49,21:49:1747:21:752:-45.7513,0,-136.441	1/1:74:0,74:0:0:74:2652:-233.747,-22.2762,0	1/1:66:6,60:6:212:60:2119:-166.94,-0.443183,0	1/1:69:1,68:1:36:68:2411:-207.609,-17.1728,0	0/1:160:83,77:83:2971:77:2728:-193.615,0,-219.457	1/1:199:0,199:0:0:199:7092:-620.408,-59.905,0	1/1:34:0,34:0:0:34:1205:-105.687,-10.235,0	0/1:161:83,78:83:2960:78:2772:-198.55,0,-218.095	1/1:70:1,69:1:36:69:2463:-212.588,-17.4755,0	1/1:60:0,60:0:0:60:2139:-188.988,-18.0618,0	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	1/1:12:0,12:0:0:12:432:-37.2192,-3.61236,0	0/1:5:3,2:3:108:2:68:-4.79262,0,-8.57002	1/1:6:0,6:0:0:6:207:-18.3978,-1.80618,0	1/1:8:0,8:0:0:8:288:-24.6069,-2.40824,0	0/1:206:112,94:112:3947:94:3348:-236.402,0,-293.365	1/1:97:1,96:1:36:96:3407:-295.87,-25.6016,0	0/1:46:23,23:23:824:23:812:-56.9568,0,-60.6326	1/1:2:0,2:0:0:2:72:-6.68992,-0.60206,0	0/1:89:43,46:43:1523:46:1643:-117.701,0,-110.565	1/1:27:0,27:0:0:27:959:-84.4983,-8.12781,0	1/1:70:0,70:0:0:70:2484:-218.143,-21.0721,0	1/1:52:0,52:0:0:52:1847:-163.357,-15.6536,0	1/1:46:0,46:0:0:46:1629:-144.03,-13.8474,0	1/1:70:1,69:1:36:69:2463:-215.594,-17.4738,0	1/1:67:1,66:1:36:66:2325:-197.373,-16.5707,0	0/1:83:50,33:50:1767:33:1188:-79.2734,0,-133.674	0/1:102:51,50:51:1805:50:1780:-127.175,0,-131.962	0/1:65:36,29:36:1279:29:1032:-72.0487,0,-95.8455	0/1:116:65,51:65:2324:51:1828:-128.255,0,-174.499	1/1:4:0,4:0:0:4:144:-12.6726,-1.20412,0	1/1:61:0,61:0:0:61:2163:-187.484,-18.3628,0	1/1:26:0,26:0:0:26:923:-82.6724,-7.82678,0	1/1:16:0,16:0:0:16:557:-47.8221,-4.81648,0	1/1:78:0,78:0:0:78:2760:-242.363,-23.4803,0	1/1:41:0,41:0:0:41:1447:-128.654,-12.3422,0	1/1:3:0,3:0:0:3:104:-9.61503,-0.90309,0	0/1:8:4,4:4:144:4:144:-10.4382,0,-10.9054	1/1:65:0,65:0:0:65:2319:-203.497,-19.567,0	1/1:89:0,89:0:0:89:3161:-280.036,-26.7917,0	1/1:8:0,8:0:0:8:288:-25.8791,-2.40824,0	1/1:108:0,108:0:0:108:3872:-345.379,-32.5112,0	0/1:96:46,50:46:1627:50:1770:-128.135,0,-117.449	1/1:49:0,49:0:0:49:1726:-150.941,-14.7505,0	1/1:47:0,47:0:0:47:1663:-147.745,-14.1484,0	1/1:84:0,84:0:0:84:2987:-264.284,-25.2865,0	0/1:91:67,24:67:2391:24:860:-48.8465,0,-188.053	1/1:34:1,33:1:36:33:1160:-97.2985,-6.63675,0	1/1:52:0,52:0:0:52:1820:-158.208,-15.6536,0	1/1:34:0,34:0:0:34:1216:-105.333,-10.235,0	1/1:11:0,11:0:0:11:381:-34.1668,-3.31133,0	0/1:152:74,78:74:2620:78:2776:-192.078,0,-190.242	0/1:56:30,26:30:1072:26:928:-63.1686,0,-79.9151	1/1:87:0,87:0:0:87:3112:-273.217,-26.1896,0	1/1:57:0,57:0:0:57:2034:-180.264,-17.1587,0	0/1:66:40,26:40:1436:26:921:-59.9598,0,-109.559	1/1:47:0,47:0:0:47:1692:-147.433,-14.1484,0	1/1:18:0,18:0:0:18:640:-54.6168,-5.41854,0	0/1:48:19,29:19:680:29:1032:-76.841,0,-47.0797	0/1:62:26,36:26:928:36:1277:-92.5165,0,-65.1615	0/1:167:93,74:93:3327:74:2632:-182.228,0,-249.373	0/1:63:31,32:31:1099:32:1139:-82.5419,0,-80.2542	0/1:61:36,25:36:1288:25:876:-59.8351,0,-97.8415	1/1:40:1,39:1:36:39:1365:-117.173,-8.49268,0	0/1:157:69,88:69:2451:88:3112:-227.705,0,-173.582	0/1:16:10,6:10:352:6:216:-14.3273,0,-27.2017	1/1:78:0,78:0:0:78:2783:-239.616,-23.4803,0	1/1:73:0,73:0:0:73:2608:-227.018,-21.9752,0	0/1:52:31,21:31:1082:21:752:-50.3658,0,-81.9865	0/1:148:68,80:68:2435:80:2838:-205.172,0,-174.824	0/1:81:56,25:56:1992:25:880:-53.6952,0,-155.169	1/1:73:0,73:0:0:73:2596:-230.826,-21.9752,0	1/1:118:0,118:0:0:118:4180:-368.78,-35.5215,0
chr01	30260780	.	T	C	93427.1	PASS	AB=0.473217;ABP=22.6678;AC=149;AF=0.792553;AN=188;AO=4652;CIGAR=1X;DP=6322;DPB=6322;DPRA=0;EPP=10104.7;EPPR=3620.68;GTI=6;LEN=1;MEANALT=1.04255;MQM=43.0267;MQMR=59.5966;NS=94;NUMALT=1;ODDS=0.200813;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166213;QR=59503;RO=1666;RPL=4652;RPP=10104.7;RPPR=3620.68;RPR=0;RUN=1;SAF=0;SAP=10104.7;SAR=4652;SRF=0;SRP=3620.68;SRR=1666;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1432:-122.326,-12.0412,0	0/1:56:21,35:21:756:35:1245:-91.4491,0,-51.4164	1/1:153:0,152:0:0:152:5430:-468.616,-45.7566,0	1/1:145:0,145:0:0:145:5186:-455.515,-43.6494,0	0/1:18:12,6:12:420:6:216:-13.947,0,-32.7155	0/1:36:14,22:14:504:22:769:-55.9324,0,-34.861	0/1:107:63,44:63:2249:44:1565:-106.195,0,-170.391	1/1:55:0,55:0:0:55:1968:-169.548,-16.5567,0	1/1:78:0,78:0:0:78:2746:-236.6,-23.4803,0	1/1:72:0,72:0:0:72:2580:-226.024,-21.6742,0	1/1:82:0,82:0:0:82:2925:-258.303,-24.6845,0	1/1:100:0,100:0:0:100:3573:-307.831,-30.103,0	0/1:67:37,30:37:1332:30:1072:-72.11,0,-99.9896	0/1:44:23,21:23:828:21:756:-52.9738,0,-61.5957	0/1:54:34,20:34:1205:20:720:-47.9725,0,-92.0941	1/1:40:0,40:0:0:40:1432:-126.01,-12.0412,0	1/1:26:0,26:0:0:26:936:-81.5439,-7.82678,0	0/1:28:13,15:13:464:15:536:-37.9324,0,-33.6653	0/1:20:6,14:6:216:14:504:-38.0998,0,-13.7665	0/1:115:61,54:61:2177:54:1921:-134.861,0,-161.485	0/1:103:48,55:48:1686:55:1964:-139.023,0,-121.01	0/1:75:54,21:54:1932:21:741:-43.4933,0,-151.509	1/1:76:0,76:0:0:76:2709:-238.392,-22.8783,0	0/1:63:6,57:6:216:57:2036:-160.507,0,-0.825622	1/1:70:1,69:1:36:69:2457:-212.076,-17.4738,0	0/1:162:86,76:86:3080:76:2730:-193.108,0,-228.661	1/1:196:0,196:0:0:196:7014:-613.184,-59.0019,0	1/1:33:0,33:0:0:33:1180:-103.692,-9.93399,0	0/1:160:83,77:83:2964:77:2749:-196.673,0,-218.756	1/1:70:0,70:0:0:70:2486:-217.422,-21.0721,0	1/1:61:0,61:0:0:61:2188:-193.287,-18.3628,0	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	1/1:12:0,12:0:0:12:432:-37.2192,-3.61236,0	0/1:5:3,2:3:108:2:72:-5.10817,0,-8.57002	1/1:6:0,6:0:0:6:216:-19.0585,-1.80618,0	1/1:8:0,8:0:0:8:288:-24.6069,-2.40824,0	0/1:209:115,93:115:4120:93:3333:-234.046,0,-307.817	1/1:96:1,95:1:36:95:3385:-293.245,-25.3006,0	0/1:45:23,22:23:824:22:792:-55.1439,0,-60.9336	1/1:2:0,2:0:0:2:72:-6.68992,-0.60206,0	0/1:87:44,43:44:1561:43:1529:-108.262,0,-114.584	1/1:27:0,27:0:0:27:968:-85.0338,-8.12781,0	1/1:72:0,72:0:0:72:2572:-224.47,-21.6742,0	1/1:50:0,50:0:0:50:1777:-157.461,-15.0515,0	1/1:45:0,45:0:0:45:1612:-142.492,-13.5464,0	1/1:71:1,70:1:36:70:2474:-216.4,-17.7749,0	1/1:69:1,67:1:36:67:2400:-203.519,-17.2257,0	0/1:84:51,33:51:1798:33:1188:-78.9724,0,-136.41	0/1:104:52,52:52:1868:52:1864:-134.015,0,-137.084	0/1:65:36,29:36:1273:29:1029:-71.5105,0,-95.304	0/1:117:66,51:66:2352:51:1836:-128.82,0,-176.688	1/1:4:0,4:0:0:4:144:-12.6726,-1.20412,0	1/1:60:0,60:0:0:60:2137:-185.32,-18.0618,0	1/1:26:0,26:0:0:26:932:-83.4598,-7.82678,0	1/1:16:0,16:0:0:16:571:-48.6831,-4.81648,0	1/1:78:0,78:0:0:78:2781:-243.835,-23.4803,0	1/1:42:0,42:0:0:42:1485:-131.217,-12.6433,0	1/1:3:0,3:0:0:3:104:-9.61503,-0.90309,0	0/1:8:4,4:4:144:4:144:-10.4382,0,-10.9054	1/1:67:0,67:0:0:67:2397:-210.817,-20.169,0	1/1:89:0,89:0:0:89:3188:-282.374,-26.7917,0	1/1:8:0,8:0:0:8:284:-25.5417,-2.40824,0	1/1:109:0,109:0:0:109:3916:-349.119,-32.8123,0	0/1:98:45,53:45:1620:53:1884:-137.745,0,-116.403	1/1:48:0,48:0:0:48:1724:-150.382,-14.4494,0	1/1:47:0,47:0:0:47:1692:-150.18,-14.1484,0	1/1:85:0,84:0:0:84:2982:-262.534,-25.2865,0	0/1:91:67,24:67:2400:24:864:-49.207,0,-188.863	1/1:35:1,34:1:36:34:1220:-102.185,-6.93778,0	1/1:53:0,53:0:0:53:1896:-164.482,-15.9546,0	1/1:32:0,32:0:0:32:1143:-99.1282,-9.63296,0	1/1:13:0,13:0:0:13:453:-40.573,-3.91339,0	0/1:156:78,78:78:2788:78:2775:-190.658,0,-204.057	0/1:56:30,26:30:1076:26:928:-63.2906,0,-80.2755	1/1:90:0,90:0:0:90:3198:-281.197,-27.0927,0	1/1:58:0,58:0:0:58:2084:-184.144,-17.4597,0	0/1:67:42,25:42:1473:25:896:-57.5971,0,-112.636	1/1:48:0,48:0:0:48:1724:-150.092,-14.4494,0	1/1:18:0,18:0:0:18:644:-54.9176,-5.41854,0	0/1:47:20,27:20:720:27:972:-71.7642,0,-50.9579	0/1:62:26,36:26:936:36:1292:-93.6951,0,-65.8807	0/1:167:95,72:95:3389:72:2576:-177.315,0,-254.95	0/1:63:31,32:31:1116:32:1148:-83.3143,0,-81.7864	0/1:60:35,25:35:1252:25:896:-61.8169,0,-94.9045	1/1:39:0,39:0:0:39:1396:-122.987,-11.7402,0	0/1:157:70,87:70:2496:87:3132:-229.437,0,-177.609	0/1:16:10,6:10:360:6:216:-14.3273,0,-27.9278	1/1:78:0,78:0:0:78:2780:-239.397,-23.4803,0	1/1:73:0,73:0:0:73:2620:-227.916,-21.9752,0	0/1:52:31,21:31:1112:21:750:-50.502,0,-84.6898	0/1:149:68,81:68:2436:81:2866:-206.415,0,-174.613	0/1:82:58,24:58:2072:24:856:-51.2031,0,-162.065	1/1:73:0,73:0:0:73:2628:-232.988,-21.9752,0	1/1:119:0,119:0:0:119:4254:-375.332,-35.8226,0
chr01	30313902	.	ATGG	ATGA,GTGA	77442.1	PASS	AB=0.442454,0.551574;ABP=55.9933,45.5674;AC=146,40;AF=0.784946,0.215054;AN=186;AO=2599,1020;CIGAR=3M1X,1X2M1X;DP=3635;DPB=3634.75;DPRA=0,1.45763;EPP=5620.64,2217.91;EPPR=0;GTI=4;LEN=1,4;MEANALT=1.63441,2.25581;MQM=59.9742,59.848;MQMR=0;NS=93;NUMALT=2;ODDS=0.436115;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=93095,35889;QR=0;RO=0;RPL=3,0;RPP=5620.64,2217.91;RPPR=0;RPR=2596,1020;RUN=1,1;SAF=0,0;SAP=5646.67,2217.91;SAR=2599,1020;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,25,0:0:0:25,0:900,0:-81.0188,-7.52575,0,-81.0188,-7.52575,-81.0188	1/2:15:0,2,13:0:0:2,13:72,447:-42.5208,-36.6438,-36.0418,-6.23466,0,-2.32127	1/1:43:0,43,0:0:0:43,0:1531,0:-138.082,-12.9443,0,-138.082,-12.9443,-138.082	1/1:80:0,80,0:0:0:80,0:2868,0:-258.357,-24.0824,0,-258.357,-24.0824,-258.357	1/2:17:0,9,8:0:0:9,8:324,285:-50.0251,-23.5863,-20.8771,-26.7966,0,-24.3883	1/2:31:0,10,21:0:0:10,21:360,748:-90.6993,-61.3239,-58.3136,-29.734,0,-23.4124	1/2:44:0,12,32:0:0:12,32:428,1107:-125.195,-90.3022,-86.6898,-35.2464,0,-25.6135	1/1:33:0,33,0:0:0:33,0:1178,0:-106.328,-9.93399,0,-106.328,-9.93399,-106.328	1/2:30:0,26,4:0:0:26,4:936,144:-88.4823,-12.1095,-4.28272,-76.7327,0,-75.5286	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/1:57:0,57,0:0:0:57,0:2043,0:-184.141,-17.1587,0,-184.141,-17.1587,-184.141	1/2:64:0,30,34:0:0:30,34:1080,1215:-187.546,-99.422,-90.3911,-88.4823,0,-78.2473	1/2:37:0,18,19:0:0:18,19:648,664:-107.243,-54.364,-48.9455,-53.2333,0,-47.5138	1/2:33:0,20,13:0:0:20,13:720,465:-97.0245,-38.2747,-32.2541,-59.1082,0,-55.1948	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:7:0,3,4:0:0:3,4:108,140:-20.5571,-11.7406,-10.8375,-9.17208,0,-7.96796	1/2:9:0,3,6:0:0:3,6:108,216:-26.7966,-17.9843,-17.0812,-9.17208,0,-7.3659	1/2:65:0,28,37:0:0:28,37:1008,1298:-188.229,-105.978,-97.5487,-82.6075,0,-71.4694	1/2:49:0,16,33:0:0:16,33:572,1133:-138.424,-91.779,-86.9625,-46.9969,0,-37.063	1/2:35:0,15,20:0:0:15,20:540,720:-103.169,-59.1082,-54.5927,-44.4211,0,-38.4005	1/1:44:0,42,2:0:0:42,2:1476,61:-132.825,-12.6433,0,-127.941,-7.45209,-127.338	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.0469,0,-14.4449	1/1:30:0,30,0:0:0:30,0:1061,0:-95.7994,-9.0309,0,-95.7994,-9.0309,-95.7994	1/2:116:0,54,62:0:0:54,62:1944,2181:-336.503,-177.879,-161.623,-158.98,0,-140.317	1/1:83:0,83,0:0:0:83,0:2961,0:-266.722,-24.9855,0,-266.722,-24.9855,-266.722	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:133:0,60,73:0:0:60,73:2156,2557:-384.284,-208.394,-190.332,-176.245,0,-154.27	1/1:53:0,53,0:0:0:53,0:1908,0:-171.998,-15.9546,0,-171.998,-15.9546,-171.998	1/1:52:0,52,0:0:0:52,0:1853,0:-167.049,-15.6536,0,-167.049,-15.6536,-167.049	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:119:0,60,59:0:0:60,59:2143,2082:-344.609,-169.888,-151.826,-175.075,0,-157.314	1/1:51:0,50,0:0:0:50,0:1788,0:-160.97,-15.0515,0,-160.97,-15.0515,-160.97	1/2:39:0,22,17:0:0:22,17:792,608:-114.559,-49.9347,-43.312,-64.983,0,-59.8655	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/2:58:0,28,30:0:0:28,30:1008,1062:-169.111,-86.8606,-78.4318,-82.6075,0,-73.5766	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:67:0,67,0:0:0:67,0:2400,0:-216.257,-20.169,0,-216.257,-20.169,-216.257	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/1:32:0,32,0:0:0:32,0:1133,0:-102.277,-9.63296,0,-102.277,-9.63296,-102.277	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/1:26:0,26,0:0:0:26,0:921,0:-83.2037,-7.82678,0,-83.2037,-7.82678,-83.2037	1/2:80:0,42,37:0:0:42,37:1508,1293:-228.184,-105.166,-92.5232,-123.012,0,-111.873	1/2:54:0,17,37:0:0:17,37:612,1299:-156.011,-106.072,-100.954,-50.2959,0,-39.1578	1/2:43:0,21,21:0:0:21,21:756,732:-121.269,-59.5764,-53.2548,-61.7429,0,-55.4213	1/2:97:0,26,71:0:0:26,71:932,2514:-281.139,-205.124,-197.297,-76.3721,0,-54.9989	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9144,-8.72987,0,-93.9144,-8.72987,-93.9144	1/1:24:0,23,0:0:0:23,0:828,0:-74.4843,-6.92369,0,-74.4843,-6.92369,-74.4843	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:56:0,56,0:0:0:56,0:1992,0:-179.551,-16.8577,0,-179.551,-16.8577,-179.551	1/1:22:0,22,0:0:0:22,0:777,0:-70.2504,-6.62266,0,-70.2504,-6.62266,-70.2504	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:7:0,2,5:0:0:2,5:72,178:-20.7256,-14.8636,-14.2615,-6.2202,0,-4.7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chr01	30337363	.	G	A	91415.5	PASS	AB=0.449271;ABP=78.137;AC=147;AF=0.790323;AN=186;AO=5253;CIGAR=1X;DP=7119;DPB=7119;DPRA=0;EPP=11409.8;EPPR=4054.98;GTI=5;LEN=1;MEANALT=1;MQM=35.0423;MQMR=35.0359;NS=93;NUMALT=1;ODDS=0.314577;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182645;QR=66780;RO=1866;RPL=0;RPP=11409.8;RPPR=4054.98;RPR=5253;RUN=1;SAF=5253;SAP=11409.8;SAR=0;SRF=1866;SRP=4054.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:885:-73.4236,-7.82678,0	0/1:96:62,34:62:2224:34:1204:-69.7537,0,-151.939	1/1:61:0,61:0:0:61:2145:-175.504,-18.3628,0	1/1:143:0,143:0:0:143:5010:-410.306,-43.0473,0	0/1:67:32,35:32:1148:35:1194:-78.5016,0,-73.629	0/1:55:26,29:26:932:29:974:-64.2248,0,-59.527	0/1:71:46,25:46:1652:25:822:-47.924,0,-113.142	1/1:254:0,254:0:0:254:8907:-729.984,-76.4616,0	1/1:78:0,78:0:0:78:2661:-219.658,-23.4803,0	1/1:55:0,55:0:0:55:1936:-157.799,-16.5567,0	1/1:12:0,12:0:0:12:424:-34.5928,-3.61236,0	1/1:41:0,41:0:0:41:1402:-115.8,-12.3422,0	0/1:42:17,25:17:604:25:877:-59.2663,0,-36.9445	0/1:43:19,24:19:684:24:837:-55.8423,0,-42.8896	0/1:48:17,31:17:612:31:1085:-74.478,0,-35.5414	1/1:35:0,35:0:0:35:1252:-101.793,-10.5361,0	1/1:34:0,34:0:0:34:1212:-98.4803,-10.235,0	0/1:18:11,7:11:396:7:252:-15.3569,0,-26.9317	0/1:7:6,1:6:216:1:36:-1.13895,0,-15.4319	0/1:187:110,77:110:3940:77:2689:-164.15,0,-264.179	0/1:100:53,47:53:1889:47:1630:-103.83,0,-124.013	0/1:113:55,58:55:1980:58:1999:-131.018,0,-126.683	1/1:94:1,93:1:36:93:3230:-262.439,-25.0507,0	1/1:142:11,131:11:392:131:4483:-336.355,-10.1807,0	1/1:80:0,80:0:0:80:2785:-228.037,-24.0824,0	0/1:393:238,155:238:8518:155:5387:-324.401,0,-574.223	1/1:147:0,147:0:0:147:5049:-416.11,-44.2514,0	1/1:22:0,22:0:0:22:768:-63.5443,-6.62266,0	0/1:204:119,85:119:4264:85:2923:-179.49,0,-286.15	1/1:122:2,120:2:72:120:4216:-338.915,-30.558,0	1/1:124:0,124:0:0:124:4286:-351.169,-37.3277,0	1/1:5:0,5:0:0:5:172:-14.5229,-1.50515,0	1/1:8:0,8:0:0:8:280:-23.2909,-2.40824,0	0/1:7:5,2:5:180:2:64:-3.63774,0,-12.8251	1/1:2:0,2:0:0:2:72:-6.1677,-0.60206,0	.:.:.:.:.:.:.:.	0/1:142:77,65:77:2764:65:2285:-144.424,0,-182.136	1/1:321:0,321:0:0:321:11261:-919.606,-96.6306,0	0/1:24:10,14:10:356:14:500:-33.6885,0,-22.0014	1/1:2:0,2:0:0:2:68:-5.95632,-0.60206,0	0/1:114:64,50:64:2296:50:1761:-109.831,0,-152.165	1/1:8:0,8:0:0:8:280:-23.2909,-2.40824,0	1/1:102:0,102:0:0:102:3556:-292.216,-30.7051,0	1/1:45:0,45:0:0:45:1596:-130.479,-13.5464,0	1/1:33:0,33:0:0:33:1168:-96.0407,-9.93399,0	1/1:117:0,117:0:0:117:4039:-332.588,-35.2205,0	1/1:84:0,84:0:0:84:2937:-241.38,-25.2865,0	0/1:103:60,43:60:2145:43:1493:-91.7772,0,-143.446	0/1:95:47,48:47:1692:48:1680:-109.856,0,-108.929	0/1:148:77,71:77:2734:71:2478:-158.588,0,-178.225	0/1:113:50,63:50:1777:63:2138:-143.143,0,-110.935	1/1:3:0,3:0:0:3:100:-8.67391,-0.90309,0	1/1:125:0,125:0:0:125:4354:-357.61,-37.6288,0	1/1:34:0,34:0:0:34:1192:-97.7166,-10.235,0	1/1:7:0,7:0:0:7:233:-19.5087,-2.10721,0	1/1:66:0,66:0:0:66:2263:-185.442,-19.868,0	1/1:64:0,64:0:0:64:2241:-183.689,-19.2659,0	1/1:4:0,4:0:0:4:121:-10.5234,-1.20412,0	0/1:12:9,3:9:324:3:104:-4.87248,0,-23.0061	1/1:74:0,74:0:0:74:2566:-211.317,-22.2762,0	1/1:81:0,81:0:0:81:2844:-232.503,-24.3834,0	1/1:4:0,4:0:0:4:140:-11.805,-1.20412,0	1/1:126:0,126:0:0:126:4365:-359.354,-37.9298,0	0/1:226:138,88:138:4921:88:3089:-185.325,0,-332.593	1/1:43:0,43:0:0:43:1486:-122.127,-12.9443,0	1/1:56:0,56:0:0:56:1891:-156.702,-16.8577,0	1/1:135:1,134:1:36:134:4631:-377.895,-37.3929,0	0/1:90:68,22:68:2448:22:772:-36.2283,0,-172.201	0/1:8:1,7:1:36:7:252:-18.3672,0,-0.837919	1/1:57:0,57:0:0:57:1958:-160.749,-17.1587,0	1/1:71:0,71:0:0:71:2524:-205.929,-21.3731,0	1/1:12:0,12:0:0:12:428:-34.7949,-3.61236,0	0/1:78:44,34:44:1572:34:1176:-73.0235,0,-104.79	0/1:43:26,17:26:913:17:589:-35.5899,0,-61.6656	1/1:124:0,124:0:0:124:4299:-353.26,-37.3277,0	1/1:112:0,112:0:0:112:3803:-315.326,-33.7154,0	0/1:60:24,36:24:860:36:1272:-85.9095,0,-52.1787	1/1:56:0,56:0:0:56:1916:-157.578,-16.8577,0	1/1:8:0,8:0:0:8:284:-23.4939,-2.40824,0	0/1:71:44,27:44:1561:27:917:-54.6607,0,-106.04	0/1:53:26,27:26:936:27:941:-61.6437,0,-60.3301	0/1:213:105,108:105:3749:108:3627:-236.469,0,-241.421	0/1:77:41,36:41:1476:36:1288:-81.6484,0,-96.9286	0/1:34:14,20:14:504:20:700:-47.5136,0,-30.8801	1/1:68:0,68:0:0:68:2409:-196.989,-20.47,0	0/1:92:47,45:47:1673:45:1584:-102.446,0,-108.692	0/1:42:27,15:27:972:15:532:-31.101,0,-66.2527	1/1:67:0,67:0:0:67:2353:-193.421,-20.169,0	1/1:36:0,36:0:0:36:1260:-103.692,-10.8371,0	0/1:11:6,5:6:216:5:172:-11.2116,0,-14.5425	0/1:28:13,15:13:468:15:532:-35.6209,0,-29.8758	0/1:33:17,16:17:612:16:572:-36.5114,0,-40.0569	1/1:70:0,70:0:0:70:2413:-197.404,-21.0721,0	1/1:58:0,58:0:0:58:2064:-168.187,-17.4597,0
chr01	30337387	.	G	A	26423	PASS	AB=0.54712;ABP=68.2898;AC=39;AF=0.209677;AN=186;AO=1867;CIGAR=1X;DP=7174;DPB=7174;DPRA=1.37427;EPP=4057.15;EPPR=11527;GTI=4;LEN=1;MEANALT=1;MQM=35.0354;MQMR=35.0439;NS=93;NUMALT=1;ODDS=0.041382;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66985;QR=190048;RO=5307;RPL=1867;RPP=4057.15;RPPR=11527;RPR=0;RUN=1;SAF=1867;SAP=4057.15;SAR=0;SRF=5307;SRP=11527;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:936:0:0:0,-7.82678,-76.2847	0/1:95:33,62:33:1180:62:2228:-152.441,0,-67.7358	0/0:59:59,0:59:2112:0:0:0,-17.7608,-171.913	0/0:149:149,0:149:5339:0:0:0,-44.8535,-433.861	0/1:68:37,31:37:1328:31:1093:-69.0089,0,-87.7508	0/1:54:28,26:28:1004:26:932:-59.828,0,-65.6421	0/1:71:24,47:24:864:47:1688:-116.063,0,-49.3644	0/0:252:252,0:252:8981:0:0:0,-75.8596,-731.554	0/0:79:79,0:79:2832:0:0:0,-23.7814,-230.829	0/0:56:56,0:56:2000:0:0:0,-16.8577,-162.435	0/0:12:12,0:12:419:0:0:0,-3.61236,-34.2409	0/0:41:41,0:41:1468:0:0:0,-12.3422,-119.706	0/1:41:25,16:25:896:16:576:-34.7271,0,-60.8198	0/1:44:24,20:24:864:20:720:-45.5102,0,-57.1963	0/1:48:31,17:31:1103:17:612:-35.5414,0,-75.6212	0/0:35:35,0:35:1260:0:0:0,-10.536,-102.195	0/0:35:35,0:35:1252:0:0:0,-10.536,-101.644	0/1:17:6,11:6:216:11:396:-27.2327,0,-12.7364	0/1:7:1,6:1:36:6:216:-15.4319,0,-1.13895	0/1:191:80,111:80:2849:111:3988:-266.497,0,-174.431	0/1:100:47,53:47:1684:53:1900:-124.707,0,-107.133	0/1:119:60,59:60:2148:59:2097:-134.843,0,-139.806	0/0:98:97,1:97:3468:1:36:0,-26.2548,-279.348	0/0:144:133,11:133:4740:11:396:0,-10.5805,-352.983	0/0:79:79,0:79:2832:0:0:0,-23.7814,-229.905	0/1:396:161,235:161:5771:235:8425:-565.643,0,-350.129	0/0:147:147,0:147:5268:0:0:0,-44.2514,-428.712	0/0:22:22,0:22:788:0:0:0,-6.62266,-64.702	0/1:205:88,117:88:3152:117:4204:-280.64,0,-194.907	0/0:120:118,2:118:4213:2:72:0,-29.9559,-337.098	0/0:126:126,0:126:4528:0:0:0,-37.9298,-367.306	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.9323	0/0:8:8,0:8:284:0:0:0,-2.40824,-23.4939	0/1:7:2,5:2:72:5:180:-12.8251,0,-4.06049	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.1677	.:.:.:.:.:.:.:.	0/1:142:65,77:65:2328:77:2753:-181.288,0,-146.877	0/0:323:323,0:323:11564:0:0:0,-97.2327,-938.557	0/1:24:14,10:14:500:10:360:-22.2038,0,-33.6885	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.1677	0/1:116:52,64:52:1864:64:2304:-152.074,0,-116.924	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.697	0/0:101:101,0:101:3632:0:0:0,-30.404,-294.908	0/0:46:46,0:46:1652:0:0:0,-13.8474,-134.404	0/0:33:33,0:33:1169:0:0:0,-9.93399,-95.7942	0/0:115:115,0:115:4124:0:0:0,-34.6184,-335.5	0/0:88:88,0:88:3152:0:0:0,-26.4906,-256.922	0/1:103:43,60:43:1544:60:2145:-143.446,0,-94.6336	0/1:98:49,49:49:1746:49:1764:-113.869,0,-113.183	0/1:151:75,76:75:2696:76:2728:-176.395,0,-173.563	0/1:116:66,50:66:2376:50:1796:-111.282,0,-158.117	0/0:3:3,0:3:104:0:0:0,-0.90309,-8.88158	0/0:125:125,0:125:4496:0:0:0,-37.6287,-365.317	0/0:33:33,0:33:1188:0:0:0,-9.93399,-96.275	0/0:7:7,0:7:248:0:0:0,-2.10721,-20.572	0/0:66:66,0:66:2360:0:0:0,-19.868,-190.994	0/0:64:64,0:64:2284:0:0:0,-19.2659,-185.838	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.0108	0/1:12:3,9:3:108:9:324:-23.0061,0,-5.08015	0/0:71:71,0:71:2548:0:0:0,-21.3731,-207.966	0/0:82:82,0:82:2935:0:0:0,-24.6845,-238.478	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.0108	0/0:127:127,0:127:4547:0:0:0,-38.2308,-369.899	0/1:223:89,134:89:3179:134:4804:-323.459,0,-192.054	0/0:43:43,0:43:1548:0:0:0,-12.9443,-125.73	0/0:56:56,0:56:2008:0:0:0,-16.8577,-163.419	0/0:139:138,1:138:4948:1:36:0,-38.597,-398.756	0/1:90:22,68:22:779:68:2448:-172.201,0,-36.3684	0/1:8:7,1:7:252:1:36:-0.837919,0,-18.3672	0/0:59:59,0:59:2124:0:0:0,-17.7608,-171.803	0/0:72:72,0:72:2584:0:0:0,-21.6742,-210.054	0/0:13:13,0:13:468:0:0:0,-3.91339,-37.9188	0/1:80:35,45:35:1256:45:1612:-107.31,0,-77.9788	0/1:44:18,26:18:648:26:936:-62.8179,0,-39.6671	0/0:127:127,0:127:4516:0:0:0,-38.2308,-367.981	0/0:117:117,0:117:4204:0:0:0,-35.2205,-341.937	0/1:59:35,24:35:1260:24:864:-52.6809,0,-84.3972	0/0:56:56,0:56:2001:0:0:0,-16.8577,-162.609	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.697	0/1:71:27,44:27:968:44:1580:-107.188,0,-57.6321	0/1:52:26,26:26:936:26:936:-60.6312,0,-60.9318	0/1:217:109,108:109:3890:108:3884:-250.52,0,-251.548	0/1:77:36,41:36:1292:41:1460:-96.1254,0,-81.7362	0/1:34:20,14:20:720:14:500:-30.7191,0,-48.5205	0/0:68:68,0:68:2440:0:0:0,-20.47,-198.839	0/1:92:45,47:45:1620:47:1692:-109.942,0,-104.403	0/1:41:14,27:14:504:27:968:-66.3526,0,-28.884	0/0:68:68,0:68:2444:0:0:0,-20.47,-199.396	0/0:35:35,0:35:1256:0:0:0,-10.536,-102.378	0/1:11:5,6:5:180:6:216:-14.5425,0,-11.621	0/1:29:16,13:16:576:13:468:-29.5748,0,-38.6447	0/1:32:15,17:15:521:17:612:-40.3579,0,-32.8362	0/0:72:72,0:72:2571:0:0:0,-21.6742,-207.645	0/0:59:59,0:59:2115:0:0:0,-17.7608,-171.762
chr01	30337513	.	T	C	136592	PASS	AB=0.500816;ABP=3.03155;AC=149;AF=0.792553;AN=188;AO=6440;CIGAR=1X;DP=8287;DPB=8287;DPRA=0;EPP=13987.3;EPPR=4013.72;GTI=0;LEN=1;MEANALT=1;MQM=59.9894;MQMR=59.9935;NS=94;NUMALT=1;ODDS=2.28999;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229445;QR=63955;RO=1847;RPL=0;RPP=13987.3;RPPR=4013.72;RPR=6440;RUN=1;SAF=0;SAP=13987.3;SAR=6440;SRF=0;SRP=4013.72;SRR=1847;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62:0:0:62:2176:-196.106,-18.6639,0	0/1:106:55,51:55:1855:51:1824:-132.532,0,-135.318	1/1:191:0,191:0:0:191:6836:-615.311,-57.4967,0	1/1:176:0,176:0:0:176:6265:-563.947,-52.9813,0	0/1:61:28,33:28:968:33:1180:-88.1452,0,-69.0686	0/1:39:18,21:18:635:21:744:-55.5442,0,-45.7368	0/1:91:26,65:26:905:65:2319:-181.576,0,-54.3691	1/1:146:0,146:0:0:146:5221:-469.091,-43.9504,0	1/1:119:0,119:0:0:119:4214:-379.441,-35.8226,0	1/1:77:0,77:0:0:77:2755:-248.191,-23.1793,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	0/1:55:28,27:28:975:27:960:-70.1596,0,-71.5049	0/1:40:20,20:20:691:20:711:-52.2744,0,-50.4691	0/1:31:13,18:13:460:18:627:-47.4225,0,-32.4034	1/1:40:0,40:0:0:40:1431:-129.087,-12.0412,0	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	0/1:15:6,9:6:199:9:311:-23.8083,0,-13.72	0/1:11:3,8:3:104:8:273:-21.5899,0,-6.39148	0/1:181:90,91:90:3145:91:3272:-240.213,0,-228.771	0/1:108:40,68:40:1368:68:2436:-186.983,0,-90.9026	0/1:107:73,34:73:2547:34:1203:-76.3648,0,-197.273	1/1:85:1,84:1:36:84:2999:-266.543,-21.9893,0	1/1:75:6,69:6:208:69:2441:-200.885,-3.51817,0	1/1:155:1,154:1:36:154:5498:-491.348,-43.0614,0	0/1:245:117,128:117:4090:128:4536:-334.655,0,-294.542	1/1:191:0,191:0:0:191:6813:-613.241,-57.4967,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:258:113,145:113:3921:145:5191:-389.663,0,-275.425	1/1:158:0,158:0:0:158:5668:-510.238,-47.5627,0	1/1:106:0,106:0:0:106:3772:-339.68,-31.9092,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:20:1,19:1:32:19:676:-57.9687,-2.82129,0	0/1:7:3,4:3:100:4:129:-9.82045,0,-7.22323	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:113:57,56:57:1952:56:1983:-144.727,0,-141.938	1/1:147:0,147:0:0:147:5235:-471.287,-44.2514,0	0/1:22:10,12:10:343:12:432:-32.5985,0,-24.5779	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:188:84,104:84:2906:104:3701:-276.698,0,-205.185	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:197:0,197:0:0:197:6963:-626.738,-59.3029,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:43:0,43:0:0:43:1504:-135.65,-12.9443,0	1/1:131:0,131:0:0:131:4677:-421.09,-39.4349,0	1/1:189:0,189:0:0:189:6757:-608.204,-56.8947,0	0/1:205:74,131:74:2577:131:4646:-356.592,0,-170.47	0/1:106:61,45:61:2096:45:1616:-113.821,0,-157	0/1:102:53,49:53:1822:49:1748:-126.899,0,-133.555	0/1:128:72,56:72:2462:56:2004:-142.102,0,-183.302	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:140:0,140:0:0:140:4987:-448.977,-42.1442,0	1/1:77:0,77:0:0:77:2759:-248.552,-23.1793,0	1/1:21:0,21:0:0:21:724:-65.4767,-6.32163,0	1/1:128:0,128:0:0:128:4549:-409.561,-38.5318,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:20:14,6:14:488:6:216:-13.7699,0,-38.2298	1/1:138:0,138:0:0:138:4917:-442.682,-41.5421,0	1/1:91:1,90:1:36:90:3153:-280.398,-23.7955,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:173:0,173:0:0:173:6182:-556.478,-52.0782,0	0/1:208:123,85:123:4196:85:3033:-210.585,0,-315.222	1/1:84:0,84:0:0:84:2999:-270.142,-25.2865,0	1/1:89:0,89:0:0:89:3177:-286.153,-26.7917,0	1/1:215:1,214:1:36:214:7612:-681.521,-61.1232,0	0/1:179:125,54:125:4385:54:1931:-120.182,0,-340.947	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:39:0,39:0:0:39:1383:-124.768,-11.7402,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:135:74,61:74:2555:61:2175:-155.377,0,-189.563	0/1:45:28,17:28:967:17:603:-41.0532,0,-73.7942	1/1:182:0,182:0:0:182:6500:-585.087,-54.7875,0	1/1:128:0,128:0:0:128:4583:-412.634,-38.5318,0	0/1:151:69,82:69:2411:82:2936:-219.019,0,-171.79	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	0/1:115:53,62:53:1817:62:2216:-165.086,0,-129.191	0/1:114:53,61:53:1851:61:2179:-162.058,0,-132.552	0/1:236:117,119:117:4064:119:4255:-312.086,0,-294.914	0/1:41:17,24:17:595:24:864:-65.7403,0,-41.5344	0/1:45:29,16:29:1002:16:576:-38.6286,0,-76.9423	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:47:25,22:25:879:22:746:-53.3026,0,-65.2784	0/1:19:12,7:12:424:7:252:-17.3094,0,-32.7768	1/1:57:0,57:0:0:57:2022:-182.252,-17.1587,0	1/1:54:0,54:0:0:54:1907:-171.907,-16.2556,0	0/1:12:5,7:5:162:7:248:-19.0518,0,-11.2865	0/1:55:25,30:25:859:30:1072:-80.2358,0,-61.0668	0/1:34:21,13:21:723:13:464:-31.8625,0,-55.1535	1/1:160:0,160:0:0:160:5658:-509.342,-48.1648,0	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0
chr01	30388040	.	C	T	144907	PASS	AB=0.510762;ABP=6.98318;AC=150;AF=0.797872;AN=188;AO=6809;CIGAR=1X;DP=8751;DPB=8751;DPRA=0;EPP=14788.6;EPPR=4215.67;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.89;MQMR=59.9938;NS=94;NUMALT=1;ODDS=1.00868;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243319;QR=69323;RO=1940;RPL=0;RPP=14788.6;RPPR=4215.67;RPR=6809;RUN=1;SAF=6809;SAP=14788.6;SAR=0;SRF=1940;SRP=4215.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	0/1:62:31,31:31:1092:31:1103:-80.8983,0,-79.9257	1/1:155:0,155:0:0:155:5510:-496.007,-46.6597,0	1/1:172:1,171:1:36:171:6130:-548.2,-48.1789,0	0/1:60:28,32:28:1008:32:1136:-84.4852,0,-72.9746	0/1:65:34,31:34:1212:31:1107:-80.3732,0,-89.8194	0/1:140:69,71:69:2480:71:2521:-184.626,0,-181.309	1/1:119:1,118:1:36:118:4189:-373.595,-32.2243,0	1/1:121:0,121:0:0:121:4336:-390.379,-36.4246,0	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	1/1:90:2,88:2:72:88:3138:-275.581,-20.256,0	1/1:110:0,110:0:0:110:3927:-353.194,-33.1133,0	0/1:80:26,54:26:936:54:1935:-150.343,0,-60.4771	0/1:125:57,68:57:2036:68:2418:-180.247,0,-145.884	0/1:61:25,36:25:900:36:1287:-97.77,0,-62.9582	1/1:132:0,132:0:0:132:4729:-425.67,-39.736,0	1/1:62:0,62:0:0:62:2224:-200.407,-18.6639,0	0/1:44:21,23:21:752:23:810:-59.9737,0,-54.7609	0/1:38:14,24:14:495:24:864:-66.6072,0,-33.4439	0/1:139:61,78:61:2184:78:2796:-210.031,0,-154.983	0/1:160:74,86:74:2652:86:3084:-229.623,0,-190.761	0/1:78:41,37:41:1472:37:1324:-95.9818,0,-109.296	1/1:68:0,68:0:0:68:2431:-219.043,-20.47,0	1/1:74:0,74:0:0:74:2656:-239.278,-22.2762,0	1/1:98:1,97:1:36:97:3451:-307.203,-25.9027,0	0/1:160:86,74:86:3084:74:2643:-189.949,0,-229.623	1/1:277:0,277:0:0:277:9874:-888.181,-83.3853,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:247:98,149:98:3500:149:5344:-406.736,0,-240.857	1/1:116:0,116:0:0:116:4143:-373.045,-34.9195,0	1/1:115:0,115:0:0:115:4076:-367.028,-34.6185,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:7:3,4:3:104:4:144:-11.206,0,-7.5956	1/1:8:0,8:0:0:8:284:-25.8978,-2.40824,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:111:51,60:51:1836:60:2140:-159.452,0,-132.106	1/1:106:0,106:0:0:106:3780:-340.373,-31.9092,0	0/1:47:20,27:20:720:27:968:-73.289,0,-50.9804	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:58:34,24:34:1203:24:854:-59.7208,0,-91.1153	1/1:45:0,45:0:0:45:1603:-144.559,-13.5464,0	1/1:162:0,162:0:0:162:5804:-522.464,-48.7669,0	1/1:56:0,56:0:0:56:1991:-179.462,-16.8577,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:100:0,100:0:0:100:3570:-321.5,-30.103,0	1/1:149:0,149:0:0:149:5342:-480.868,-44.8535,0	0/1:141:83,58:83:2972:58:2069:-143.784,0,-225.268	0/1:100:53,47:53:1892:47:1684:-121.73,0,-140.455	0/1:128:67,61:67:2404:61:2188:-158.547,0,-178.085	0/1:114:58,56:58:2066:56:2008:-146.666,0,-151.892	1/1:9:0,9:0:0:9:314:-28.5957,-2.70927,0	1/1:93:0,93:0:0:93:3328:-299.731,-27.9958,0	1/1:108:0,108:0:0:108:3863:-347.858,-32.5112,0	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	1/1:194:0,194:0:0:194:6922:-622.93,-58.3998,0	1/1:39:0,39:0:0:39:1372:-123.775,-11.7402,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	1/1:120:0,120:0:0:120:4280:-385.128,-36.1236,0	1/1:119:1,118:1:36:118:4234:-377.64,-32.2243,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:97:0,97:0:0:97:3471:-312.595,-29.1999,0	0/1:160:71,89:71:2544:89:3186:-238.776,0,-181.024	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	1/1:72:1,71:1:36:71:2532:-224.534,-18.0759,0	1/1:150:0,150:0:0:150:5351:-481.723,-45.1545,0	0/1:290:211,79:211:7534:79:2836:-168.179,0,-590.804	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	1/1:69:0,69:0:0:69:2476:-223.087,-20.7711,0	1/1:44:0,44:0:0:44:1567:-141.321,-13.2453,0	1/1:30:0,30:0:0:30:1040:-93.8977,-9.0309,0	0/1:145:71,74:71:2524:74:2644:-194.557,0,-183.763	0/1:93:42,50:42:1491:50:1792:-133.508,0,-106.429	1/1:177:0,177:0:0:177:6306:-567.612,-53.2823,0	1/1:139:0,139:0:0:139:4981:-448.424,-41.8432,0	0/1:154:81,72:81:2892:72:2580:-186.019,0,-214.099	1/1:130:2,128:2:72:128:4580:-405.529,-32.2972,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:97:49,48:49:1756:48:1724:-126.241,0,-129.124	0/1:114:42,72:42:1504:72:2558:-196.152,0,-101.337	0/1:139:52,87:52:1852:87:3116:-238.823,0,-125.117	0/1:40:20,20:20:720:20:720:-53.0876,0,-53.0876	0/1:90:42,48:42:1495:48:1716:-127.633,0,-107.751	1/1:48:0,48:0:0:48:1709:-154.094,-14.4494,0	0/1:115:58,57:58:2080:57:2052:-150.328,0,-152.852	0/1:16:9,7:9:306:7:252:-18.2125,0,-23.0521	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:73:1,72:1:36:72:2579:-228.323,-18.3769,0	0/1:114:44,70:44:1562:70:2494:-190.351,0,-106.553	0/1:149:66,83:66:2347:83:2966:-222.318,0,-166.636	0/1:56:33,23:33:1180:23:820:-57.2648,0,-89.6504	1/1:113:0,113:0:0:113:4033:-363.157,-34.0164,0	1/1:82:0,82:0:0:82:2952:-265.912,-24.6845,0
chr01	30388065	.	GAG	CAA,GAA	203419	PASS	AB=0.485795,0.512327;ABP=10.4751,8.63145;AC=150,38;AF=0.797872,0.202128;AN=188;AO=6977,2189;CIGAR=1X1M1X,2M1X;DP=9181;DPB=9218.33;DPRA=0,1.39591;EPP=15101.3,4739.01;EPPR=5.18177;GTI=2;LEN=3,1;MEANALT=1.59574,2.18182;MQM=59.8787,59.9895;MQMR=60;NS=94;NUMALT=2;ODDS=1.59264;PAIRED=0,0;PAIREDR=0;PAO=57,55;PQA=1237,1169;PQR=0;PRO=0;QA=247158,78053;QR=36;RO=1;RPL=6971,1940;RPP=15101.3,2839.6;RPPR=5.18177;RPR=6,249;RUN=1,1;SAF=6977,1942;SAP=15153.4,2853.03;SAR=0,247;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55,0:0:0:55,0:1947,0:-175.503,-16.5567,0,-175.503,-16.5567,-175.503	1/2:66:0,33,32:0:0:33,32:1171,1144:-188.686,-93.2961,-83.3621,-95.4053,0,-85.7724	1/1:158:0,158,0:0:0:158,0:5555,0:-500.067,-47.5627,0,-500.067,-47.5627,-500.067	1/1:174:0,172,1:0:0:172,1:6129,36:-551.333,-51.7772,0,-548.396,-48.8599,-548.095	1/2:60:0,32,28:0:0:32,28:1140,1000:-174.687,-81.7705,-72.1375,-93.1584,0,-84.7295	1/2:68:0,32,36:0:0:32,36:1146,1292:-199.205,-105.747,-96.1137,-93.817,0,-82.98	1/2:142:0,74,68:0:0:74,68:2629,2436:-413.072,-198.907,-176.63,-214.404,0,-193.934	1/1:122:0,122,0:0:0:122,0:4351,0:-391.766,-36.7257,0,-391.766,-36.7257,-391.766	1/1:121:0,121,0:0:0:121,0:4260,0:-383.216,-36.4246,0,-383.216,-36.4246,-383.216	1/1:70:0,70,0:0:0:70,0:2482,0:-223.575,-21.0721,0,-223.575,-21.0721,-223.575	1/1:90:0,89,1:0:0:89,1:3163,36:-284.378,-26.7917,0,-281.441,-23.4944,-281.14	1/1:114:0,114,0:0:0:114,0:4005,0:-360.436,-34.3174,0,-360.436,-34.3174,-360.436	1/2:81:0,54,27:0:0:54,27:1931,968:-236.763,-79.3096,-63.0539,-157.811,0,-149.684	1/2:128:0,70,58:0:0:70,58:2472,2080:-371.317,-170.011,-148.938,-201.663,0,-184.203	1/2:62:0,36,26:0:0:36,26:1272,936:-180.142,-76.5591,-65.722,-103.768,0,-95.9413	1/1:134:0,131,0:0:0:131,0:4658,0:-419.021,-39.4349,0,-419.021,-39.4349,-419.021	1/1:63:0,63,0:0:0:63,0:2240,0:-201.86,-18.9649,0,-201.86,-18.9649,-201.86	1/2:44:0,24,20:0:0:24,20:855,720:-128.796,-59.1082,-51.8835,-70.0461,0,-64.0255	1/2:41:0,28,13:0:0:28,13:980,450:-116.638,-36.9149,-28.486,-80.0707,0,-76.1573	1/2:140:0,78,62:0:0:78,62:2776,2232:-408.489,-182.25,-158.769,-226.369,0,-207.705	1/2:162:0,89,73:0:0:89,73:3183,2619:-473.347,-213.803,-187.012,-259.724,0,-237.749	1/2:111:0,38,72:0:0:38,72:1334,2531:-314.555,-205.999,-194.56,-108.547,0,-86.873	1/1:69:0,69,0:0:0:69,0:2456,0:-221.236,-20.7711,0,-221.236,-20.7711,-221.236	1/1:77:0,77,0:0:0:77,0:2705,0:-243.694,-23.1793,0,-243.694,-23.1793,-243.694	1/1:101:0,100,1:0:0:100,1:3552,36:-319.53,-30.103,0,-316.593,-26.8058,-316.292	1/2:239:0,77,160:0:0:77,160:2708,5671:-682.4,-461.971,-438.791,-220.407,0,-172.242	1/1:285:0,285,0:0:0:285,0:10064,0:-905.43,-85.7936,0,-905.43,-85.7936,-905.43	1/1:30:0,30,0:0:0:30,0:1061,0:-95.4786,-9.0309,0,-95.4786,-9.0309,-95.4786	1/2:284:0,151,133:0:0:151,133:5333,4742:-821.197,-386.902,-341.447,-434.65,0,-394.613	1/1:119:0,119,0:0:0:119,0:4210,0:-379.014,-35.8226,0,-379.014,-35.8226,-379.014	1/1:119:0,119,0:0:0:119,0:4209,0:-378.934,-35.8226,0,-378.934,-35.8226,-378.934	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:21:0,21,0:0:0:21,0:746,0:-67.4644,-6.32163,0,-67.4644,-6.32163,-67.4644	1/2:7:0,4,3:0:0:4,3:144,108:-20.9213,-9.17208,-7.96796,-12.1091,0,-11.206	1/1:8:0,8,0:0:0:8,0:285,0:-25.9874,-2.40824,0,-25.9874,-2.40824,-25.9874	1/1:34:0,34,0:0:0:34,0:1211,0:-109.296,-10.235,0,-109.296,-10.235,-109.296	1/2:168:0,61,107:0:0:61,107:2157,3802:-485.785,-310.106,-291.744,-175.974,0,-143.764	1/1:107:0,107,0:0:0:107,0:3790,0:-341.023,-32.2102,0,-341.023,-32.2102,-341.023	1/2:50:0,29,21:0:0:29,21:1020,756:-145.07,-62.0456,-53.3157,-83.381,0,-77.0593	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:59:0,25,32:0:0:25,32:892,1152:-166.714,-93.9974,-86.4716,-72.7148,0,-63.0818	1/1:46:0,46,0:0:0:46,0:1627,0:-146.718,-13.8474,0,-146.718,-13.8474,-146.718	1/1:167:0,167,0:0:0:167,0:5934,0:-533.932,-50.272,0,-533.932,-50.272,-533.932	1/1:57:0,57,0:0:0:57,0:2020,0:-182.008,-17.1587,0,-182.008,-17.1587,-182.008	1/1:54:0,54,0:0:0:54,0:1921,0:-173.161,-16.2556,0,-173.161,-16.2556,-173.161	1/1:105:0,104,1:0:0:104,1:3668,32:-329.997,-31.3071,0,-327.419,-28.4088,-327.118	1/1:156:0,155,0:0:0:155,0:5470,0:-491.905,-46.6597,0,-491.905,-46.6597,-491.905	1/2:140:0,60,80:0:0:60,80:2082,2857:-402.445,-233.224,-215.162,-169.513,0,-145.431	1/2:102:0,48,54:0:0:48,54:1706,1939:-297.491,-158.475,-144.025,-139.318,0,-123.062	1/2:128:0,62,66:0:0:62,66:2187,2345:-369.412,-191.381,-172.717,-178.327,0,-158.459	1/2:160:0,57,103:0:0:57,103:2026,3640:-461.89,-296.8,-279.642,-165.444,0,-134.438	1/1:8:0,8,0:0:0:8,0:286,0:-26.0328,-2.40824,0,-26.0328,-2.40824,-26.0328	1/1:94:0,94,0:0:0:94,0:3331,0:-300.004,-28.2968,0,-300.004,-28.2968,-300.004	1/1:110:0,110,0:0:0:110,0:3927,0:-353.614,-33.1133,0,-353.614,-33.1133,-353.614	1/1:18:0,18,0:0:0:18,0:636,0:-57.5674,-5.41854,0,-57.5674,-5.41854,-57.5674	1/1:197:0,196,1:0:0:196,1:6946,36:-624.461,-59.0019,0,-621.523,-55.7046,-621.222	1/1:39:0,39,0:0:0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chr01	30388092	.	T	G	62335.1	PASS	AB=0.459525;ABP=90.5483;AC=37;AF=0.196809;AN=188;AO=2841;CIGAR=1X;DP=13580;DPB=13580;DPRA=1.51435;EPP=6172.16;EPPR=23298.6;GTI=0;LEN=1;MEANALT=1.14894;MQM=59.9792;MQMR=59.968;NS=94;NUMALT=1;ODDS=0.452864;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100418;QR=382062;RO=10728;RPL=1378;RPP=8.53261;RPPR=883.784;RPR=1463;RUN=1;SAF=1378;SAP=8.53261;SAR=1463;SRF=4321;SRP=883.784;SRR=6407;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.191	0/1:115:66,49:66:2368:49:1743:-122.536,0,-178.76	0/0:210:210,0:210:7483:0:0:0,-63.2163,-673.515	0/0:347:344,1:344:12289:1:36:0,-100.597,-1102.29	0/1:105:58,47:58:2079:47:1669:-118.888,0,-155.767	0/1:57:32,25:32:1124:25:888:-63.0803,0,-84.3065	0/1:218:102,114:102:3605:114:4059:-300.116,0,-259.276	0/0:173:173,0:173:6167:0:0:0,-52.0782,-555.131	0/0:178:177,1:177:6320:1:36:0,-49.9851,-565.296	0/0:194:194,0:194:6912:0:0:0,-58.3998,-622.149	0/0:137:137,0:137:4892:0:0:0,-41.2411,-440.434	0/0:90:90,0:90:3220:0:0:0,-27.0927,-289.993	0/1:98:57,41:57:2048:41:1443:-100.664,0,-155.091	0/1:162:89,73:89:3150:73:2557:-181.606,0,-234.96	0/1:130:72,58:72:2576:58:2038:-144.557,0,-192.956	0/0:107:107,0:107:3824:0:0:0,-32.2102,-344.358	0/0:117:117,0:117:4181:0:0:0,-35.2205,-376.471	0/1:86:43,43:43:1548:43:1514:-110.663,0,-113.724	0/1:35:22,13:22:779:13:460:-31.1993,0,-59.896	0/1:238:146,92:146:5217:92:3236:-219.818,0,-398.009	0/1:221:125,95:125:4473:95:3351:-235.33,0,-336.26	0/1:151:71,80:71:2527:80:2799:-206.694,0,-182.069	0/0:147:147,0:147:5229:0:0:0,-44.2514,-470.75	0/0:156:151,5:151:5401:5:180:0,-30.4086,-469.667	0/0:88:87,1:87:3094:1:27:0,-23.7909,-275.988	0/1:385:214,171:214:7667:171:6058:-429.432,0,-574.167	0/0:347:346,0:346:12295:0:0:0,-104.156,-1106.19	0/0:43:43,0:43:1527:0:0:0,-12.9443,-137.722	0/1:408:263,145:263:9375:145:5115:-337.678,0,-720.708	0/0:155:154,1:154:5496:1:36:0,-43.0614,-491.171	0/0:268:268,0:268:9569:0:0:0,-80.676,-861.167	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.7996	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:275:152,123:152:5411:123:4366:-310.325,0,-404.337	0/0:149:149,0:149:5324:0:0:0,-44.8535,-479.292	0/1:88:47,41:47:1664:41:1448:-104.125,0,-123.557	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:89:53,36:53:1877:36:1296:-90.1523,0,-142.415	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:180:180,0:180:6444:0:0:0,-54.1854,-580.044	0/0:123:122,0:122:4342:0:0:0,-36.7257,-390.464	0/0:113:113,0:113:4018:0:0:0,-34.0164,-361.681	0/0:217:216,1:216:7684:1:36:0,-61.7252,-687.99	0/0:136:136,0:136:4843:0:0:0,-40.9401,-436.026	0/1:214:107,107:107:3792:107:3789:-276.788,0,-276.924	0/1:178:98,80:98:3496:80:2821:-200.548,0,-261.255	0/1:241:128,112:128:4539:112:3969:-284.893,0,-336.022	0/1:216:110,106:110:3923:106:3755:-273.131,0,-288.236	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5702	0/0:100:100,0:100:3545:0:0:0,-30.103,-319.26	0/0:143:143,0:143:5098:0:0:0,-43.0473,-458.956	0/0:27:27,0:27:921:0:0:0,-8.12781,-83.1962	0/0:157:156,1:156:5560:1:36:0,-43.6634,-496.922	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.731	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:24:18,6:18:648:6:216:-12.5658,0,-51.4272	0/0:107:107,0:107:3824:0:0:0,-32.2102,-344.358	0/0:229:229,0:229:8153:0:0:0,-68.9359,-733.787	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:277:276,0:276:9818:0:0:0,-83.0843,-883.208	0/1:313:190,123:190:6785:123:4335:-296.106,0,-516.5	0/0:109:109,0:109:3893:0:0:0,-32.8123,-350.563	0/0:161:161,0:161:5748:0:0:0,-48.4658,-517.435	0/0:342:341,1:341:12086:1:36:0,-99.354,-1083.99	0/1:362:110,251:110:3929:251:8914:-693.359,0,-244.91	0/0:83:83,0:83:2945:0:0:0,-24.9855,-265.284	0/0:92:92,0:92:3261:0:0:0,-27.6948,-293.711	0/0:110:110,0:110:3931:0:0:0,-33.1133,-353.982	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.184	0/1:112:65,47:65:2320:47:1659:-115.873,0,-175.345	0/1:103:48,55:48:1720:55:1947:-144.499,0,-124.079	0/0:260:260,0:260:9241:0:0:0,-78.2678,-831.172	0/0:269:269,0:269:9602:0:0:0,-80.9771,-864.123	0/1:142:75,67:75:2677:67:2368:-170.631,0,-198.414	0/0:198:197,1:197:6986:1:36:0,-56.0057,-625.194	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:152:64,88:64:2292:88:3124:-235.629,0,-160.785	0/1:126:80,45:80:2826:45:1580:-104.5,0,-216.589	0/1:250:160,90:160:5695:90:3206:-213.506,0,-437.414	0/1:108:62,46:62:2205:46:1590:-110.872,0,-166.202	0/1:142:77,65:77:2722:65:2315:-165.864,0,-202.478	0/0:131:131,0:131:4632:0:0:0,-39.4349,-417.047	0/1:241:131,110:131:4629:110:3864:-275.409,0,-344.227	0/1:37:16,21:16:561:21:744:-56.1462,0,-39.679	0/0:108:108,0:108:3848:0:0:0,-32.5112,-346.518	0/0:96:96,0:96:3418:0:0:0,-28.8989,-307.834	0/1:104:63,41:63:2209:41:1456:-100.029,0,-167.765	0/1:129:74,55:74:2621:55:1929:-135.052,0,-197.304	0/1:97:31,66:31:1104:66:2302:-178.238,0,-70.4707	0/0:197:197,0:197:7028:0:0:0,-59.3029,-632.586	0/0:189:188,1:188:6674:1:36:0,-53.2964,-597.141
chr01	30395005	.	CAGCG	CAGCC,TAGCC	408258	PASS	AB=0.514401,0.480847;ABP=15.5188,25.1366;AC=149,39;AF=0.792553,0.207447;AN=188;AO=11999,3367;CIGAR=4M1X,1X3M1X;DP=15476;DPB=15477.4;DPRA=0,1.26589;EPP=26049.8,7314.36;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=2.51064,2.93617;MQM=59.6914,40.0906;MQMR=60;NS=94;NUMALT=2;ODDS=5.83069;PAIRED=0,0;PAIREDR=0;PAO=0.5,6.5;PQA=16,228;PQR=0;PRO=0;QA=424248,117167;QR=25;RO=1;RPL=4958,1672;RPP=788.224,3.35147;RPPR=5.18177;RPR=7041,1695;RUN=1,1;SAF=4959,1672;SAP=786.717,3.35147;SAR=7040,1695;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:99:0,98,0:0:0:98,0:3485,0:-313.509,-29.5009,0,-313.509,-29.5009,-313.509	1/2:225:0,112,113:0:0:112,113:3937,3958:-611.292,-290.858,-257.143,-320.769,0,-286.753	1/1:276:0,272,0:0:0:272,0:9564,0:-859.549,-81.8802,0,-859.549,-81.8802,-859.549	1/1:328:0,323,1:0:0:323,1:11395,31:-1024.41,-97.2327,0,-1021.92,-94.7432,-1021.62	1/2:67:0,25,42:0:0:25,42:896,1451:-180.487,-107.397,-99.871,-73.4331,0,-60.7898	1/2:72:0,37,35:0:0:37,35:1287,1208:-195.523,-90.8676,-79.7295,-104.989,0,-94.4531	1/2:214:0,127,86:0:0:127,86:4511,3023:-592.032,-224.79,-186.559,-367.327,0,-341.438	1/1:229:0,229,0:0:0:229,0:8058,0:-725.092,-68.9359,0,-725.092,-68.9359,-725.092	1/1:245:0,244,0:0:0:244,0:8718,0:-783.607,-73.4513,0,-783.607,-73.4513,-783.607	1/1:203:1,200,0:1:25:200,0:7078,0:-634.37,-58.2621,0,-634.671,-60.206,-636.619	1/1:133:0,131,0:0:0:131,0:4652,0:-418.501,-39.4349,0,-418.501,-39.4349,-418.501	1/1:173:0,173,0:0:0:173,0:6011,0:-541.1,-52.0782,0,-541.1,-52.0782,-541.1	1/2:137:0,75,61:0:0:75,61:2614,2139:-362.049,-149.487,-126.91,-212.528,0,-194.165	1/2:105:0,58,46:0:0:58,46:2025,1596:-279.686,-114.987,-97.5272,-164.746,0,-150.898	1/2:130:0,70,60:0:0:70,60:2504,2100:-355.848,-151.648,-130.576,-204.534,0,-186.472	1/1:114:0,113,0:0:0:113,0:3974,0:-357.389,-34.0164,0,-357.389,-34.0164,-357.389	1/1:97:0,96,0:0:0:96,0:3389,0:-304.867,-28.8989,0,-304.867,-28.8989,-304.867	1/2:89:0,49,40:0:0:49,40:1727,1393:-243.776,-103.146,-88.3959,-140.964,0,-128.922	1/2:62:0,31,31:0:0:31,31:1095,1067:-164.259,-75.0776,-65.7456,-89.5086,0,-80.1767	1/2:296:0,134,158:0:0:134,158:4783,5518:-803.827,-413.91,-373.572,-389.978,0,-342.415	1/2:264:0,133,131:0:0:133,131:4684,4552:-720.804,-339.553,-299.516,-381.588,0,-342.153	1/2:164:0,57,107:0:0:57,107:2012,3685:-441.311,-277.461,-260.302,-163.836,0,-131.625	1/1:199:0,197,1:0:0:197,1:6969,36:-626.89,-59.3029,0,-623.966,-56.38,-623.665	1/1:183:0,164,17:0:0:164,17:5852,594:-526.395,-49.3689,0,-482.601,-5.5036,-477.483	1/1:114:0,114,0:0:0:114,0:4036,0:-363.301,-34.3174,0,-363.301,-34.3174,-363.301	1/2:446:0,233,209:0:0:233,209:8291,7282:-1228.78,-554.237,-484.097,-674.576,0,-611.66	1/1:430:0,422,0:0:0:422,0:15022,0:-1351.24,-127.035,0,-1351.24,-127.035,-1351.24	1/1:63:0,62,0:0:0:62,0:2190,0:-196.758,-18.6639,0,-196.758,-18.6639,-196.758	1/2:391:0,197,193:0:0:197,193:7003,6762:-1082.71,-512.099,-452.796,-570.598,0,-512.5	1/1:198:0,196,1:0:0:196,1:6927,30:-622.863,-59.0019,0,-620.835,-56.9635,-620.534	1/1:144:0,142,0:0:0:142,0:5012,0:-450.87,-42.7463,0,-450.87,-42.7463,-450.87	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:16:0,16,0:0:0:16,0:567,0:-51.3607,-4.81648,0,-51.3607,-4.81648,-51.3607	1/2:8:0,3,5:0:0:3,5:108,173:-20.5456,-11.7061,-10.8031,-9.17208,0,-7.66693	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:16:0,15,0:0:0:15,0:532,0:-47.8528,-4.51545,0,-47.8528,-4.51545,-47.8528	1/2:354:0,191,163:0:0:191,163:6743,5663:-978.219,-429.352,-371.855,-549.205,0,-500.137	1/1:205:0,200,0:0:0:200,0:7102,0:-638.543,-60.206,0,-638.543,-60.206,-638.543	1/2:103:0,54,48:0:0:54,48:1899,1662:-272.828,-118.224,-101.968,-154.729,0,-140.28	1/2:4:0,3,1:0:0:3,1:108,31:-11.3214,-2.44526,-1.54217,-9.17208,0,-8.87105	1/2:211:0,122,89:0:0:122,89:4253,3098:-571.999,-226.132,-189.406,-346.196,0,-319.405	1/1:71:0,71,0:0:0:71,0:2505,0:-225.579,-21.3731,0,-225.579,-21.3731,-225.579	1/1:224:0,220,1:0:0:220,1:7790,33:-700.737,-66.2266,0,-698.092,-63.5877,-697.791	1/1:156:0,155,0:0:0:155,0:5452,0:-490.27,-46.6597,0,-490.27,-46.6597,-490.27	1/1:121:0,118,0:0:0:118,0:4156,0:-373.809,-35.5215,0,-373.809,-35.5215,-373.809	1/1:186:0,184,0:0:0:184,0:6560,0:-590.13,-55.3895,0,-590.13,-55.3895,-590.13	1/1:209:0,203,0:0:0:203,0:7109,0:-639.132,-61.1091,0,-639.132,-61.1091,-639.132	1/2:231:0,136,95:0:0:136,95:4836,3267:-636.639,-242.681,-201.741,-393.934,0,-365.336	1/2:187:0,98,89:0:0:98,89:3430,3081:-511.67,-232.641,-203.14,-279.365,0,-252.574	1/2:241:0,124,115:0:0:124,115:4351,4017:-649.619,-295.544,-258.216,-354.098,0,-319.48	1/2:240:0,125,114:0:0:125,114:4395,3981:-654.805,-297.047,-259.418,-357.815,0,-323.497	1/1:14:0,14,0:0:0:14,0:495,0:-44.883,-4.21442,0,-44.883,-4.21442,-44.883	1/1:257:0,254,0:0:0:254,0:9004,0:-809.982,-76.4616,0,-809.982,-76.4616,-809.982	1/1:168:0,168,0:0:0:168,0:5949,0:-535.376,-50.573,0,-535.376,-50.573,-535.376	1/1:32:0,32,0:0:0:32,0:1148,0:-103.626,-9.63296,0,-103.626,-9.63296,-103.626	1/1:22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chr01	30395018	.	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chr01	30642947	.	A	G	27842.8	PASS	AB=0.473056;ABP=25.7118;AC=40;AF=0.212766;AN=188;AO=1717;CIGAR=1X;DP=7836;DPB=7836;DPRA=1.20019;EPP=3731.43;EPPR=13288.1;GTI=1;LEN=1;MEANALT=1.02083;MQM=59.9301;MQMR=59.9667;NS=94;NUMALT=1;ODDS=3.61549;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61104;QR=219135;RO=6118;RPL=1717;RPP=3731.43;RPPR=13279.4;RPR=0;RUN=1;SAF=1717;SAP=3731.43;SAR=0;SRF=6117;SRP=13279.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:66:32,34:32:1148:34:1200:-88.4376,0,-83.7619	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/0:175:174,1:174:6224:1:36:0,-49.082,-556.658	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/1:37:15,22:15:536:22:792:-60.4676,0,-36.4101	0/1:85:51,34:51:1828:34:1220:-84.5193,0,-139.213	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:104:104,0:104:3720:0:0:0,-31.3071,-334.775	0/0:84:84,0:84:2984:0:0:0,-25.2865,-268.791	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.932	0/1:80:48,32:48:1704:32:1139:-78.736,0,-129.564	0/1:97:46,51:46:1648:51:1806:-133.62,0,-119.409	0/1:56:33,23:33:1180:23:824:-57.621,0,-89.6504	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:42:23,19:23:828:19:680:-48.8859,0,-62.2009	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:119:42,77:42:1512:77:2741:-211.11,0,-100.552	0/1:124:69,54:69:2476:54:1931:-136.679,0,-185.707	0/1:51:17,34:17:612:34:1199:-92.8619,0,-40.0609	0/0:105:104,1:104:3727:1:36:0,-28.0099,-332.032	0/1:51:46,5:46:1648:5:180:-1.19954,0,-133.256	0/0:19:18,1:18:639:1:36:0,-2.12129,-54.24	0/1:209:109,100:109:3901:100:3556:-256.843,0,-288.367	0/0:150:150,0:150:5357:0:0:0,-45.1545,-482.262	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:201:112,89:112:4011:89:3176:-225.557,0,-300.671	0/0:145:143,2:143:5128:2:72:0,-36.8126,-454.824	0/0:125:125,0:125:4492:0:0:0,-37.6287,-404.447	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:191:99,92:99:3536:92:3292:-239.003,0,-260.953	0/1:124:68,56:68:2416:56:1966:-139.875,0,-180.36	0/1:57:30,27:30:1080:27:957:-69.2868,0,-80.3187	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:124:67,57:67:2367:57:2031:-145.734,0,-175.956	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.225	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:51:48,3:48:1724:3:108:0,-5.27736,-145.37	0/1:162:78,84:78:2796:84:2975:-219.215,0,-203.113	0/1:77:50,27:50:1800:27:949:-62.5443,0,-139.103	0/1:152:88,64:88:3160:64:2276:-159.29,0,-238.868	0/1:86:62,24:62:2228:24:856:-51.4725,0,-174.895	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:129:129,0:129:4632:0:0:0,-38.8329,-417.041	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:169:169,0:169:6052:0:0:0,-50.8741,-544.709	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:25:16,9:16:564:9:324:-21.9801,0,-43.5646	0/0:116:116,0:116:4155:0:0:0,-34.9195,-374.132	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.806	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:296:296,0:296:10608:0:0:0,-89.1049,-954.627	0/1:128:69,59:69:2459:59:2107:-151.367,0,-183.032	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:163:161,2:161:5763:2:72:0,-42.2312,-511.948	0/1:122:43,79:43:1540:79:2828:-218.031,0,-102.167	0/0:56:53,3:53:1900:3:104:0,-7.15487,-161.575	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:43:42,1:42:1500:1:36:0,-9.34601,-131.696	0/1:67:40,27:40:1415:27:960:-66.5473,0,-107.478	0/1:79:48,31:48:1728:31:1106:-76.0696,0,-132.024	0/0:151:151,0:151:5424:0:0:0,-45.4555,-488.287	0/0:203:203,0:203:7258:0:0:0,-61.1091,-653.27	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/0:98:98,0:98:3505:0:0:0,-29.5009,-315.659	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.4319	0/1:105:45,60:45:1620:60:2129:-160.269,0,-114.482	0/1:47:25,22:25:900:22:788:-57.0964,0,-67.1726	0/1:162:101,61:101:3632:61:2179:-147.609,0,-278.317	0/1:66:38,28:38:1364:28:988:-69.3654,0,-103.193	0/1:68:37,31:37:1313:31:1116:-80.2532,0,-97.9997	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:130:67,63:67:2399:63:2243:-162.999,0,-177.032	0/1:22:10,12:10:360:12:420:-31.5114,0,-26.1216	0/0:95:95,0:95:3420:0:0:0,-28.5978,-308.012	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/1:78:37,41:37:1328:41:1468:-108.936,0,-96.3419	0/1:178:80,98:80:2855:98:3460:-258.028,0,-203.604	0/1:68:23,45:23:811:45:1590:-122.83,0,-52.8399	0/0:210:210,0:210:7518:0:0:0,-63.2163,-676.658	0/0:77:77,0:77:2749:0:0:0,-23.1793,-247.651
chr01	30645421	.	T	A	126904	PASS	AB=0.481354;ABP=16.2095;AC=147;AF=0.790323;AN=186;AO=6083;CIGAR=1X;DP=8365;DPB=8365;DPRA=0;EPP=13212.1;EPPR=4956.14;GTI=5;LEN=1;MEANALT=1.01075;MQM=59.9699;MQMR=59.9965;NS=93;NUMALT=1;ODDS=1.9512;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=217774;QR=81455;RO=2281;RPL=0;RPP=13212.1;RPPR=4956.14;RPR=6083;RUN=1;SAF=6083;SAP=13212.1;SAR=0;SRF=2281;SRP=4956.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	0/1:168:95,73:95:3404:73:2616:-185.115,0,-256.001	1/1:158:0,158:0:0:158:5680:-511.312,-47.5627,0	1/1:132:0,132:0:0:132:4736:-426.395,-39.736,0	0/1:64:36,28:36:1284:28:1006:-71.5903,0,-96.5975	0/1:79:34,45:34:1216:45:1620:-122.309,0,-85.9652	0/1:147:63,84:63:2233:84:3016:-227.419,0,-156.981	1/1:164:1,163:1:36:163:5856:-523.549,-45.7706,0	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	1/1:74:1,73:1:32:73:2612:-232.129,-19.0769,0	1/1:53:0,53:0:0:53:1893:-170.329,-15.9546,0	1/1:93:0,93:0:0:93:3328:-299.738,-27.9958,0	0/1:70:47,23:47:1684:23:824:-53.4112,0,-130.775	0/1:90:43,47:43:1544:47:1675:-123.944,0,-112.16	0/1:74:36,38:36:1296:38:1368:-101.145,0,-94.6677	1/1:70:0,70:0:0:70:2500:-225.253,-21.0721,0	1/1:73:0,73:0:0:73:2622:-236.227,-21.9752,0	0/1:68:31,37:31:1108:37:1332:-99.7123,0,-79.561	0/1:42:26,16:26:932:16:576:-39.5317,0,-71.5556	0/1:191:96,95:96:3452:95:3397:-248.447,0,-253.395	0/1:172:94,78:94:3351:78:2800:-200.462,0,-250.03	0/1:44:34,10:34:1220:10:360:-19.499,0,-96.8615	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:73:3,70:3:108:70:2500:-215.177,-11.9,0	1/1:54:0,54:0:0:54:1928:-173.796,-16.2556,0	0/1:267:136,131:136:4856:131:4688:-341.706,0,-356.818	1/1:160:0,160:0:0:160:5732:-515.996,-48.1648,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:170:93,77:93:3328:77:2758:-197.286,0,-248.563	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:91:0,91:0:0:91:3242:-291.977,-27.3937,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:224:102,122:102:3616:122:4360:-325.142,0,-258.215	0/1:111:57,54:57:2024:54:1932:-140.742,0,-149.019	0/1:76:33,43:33:1188:43:1544:-116.375,0,-84.3503	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:129:53,76:53:1884:76:2720:-206.202,0,-131.006	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	1/1:69:0,69:0:0:69:2468:-222.337,-20.7711,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	1/1:121:1,120:1:36:120:4299:-383.38,-32.8264,0	0/1:178:96,82:96:3409:82:2928:-210.172,0,-253.442	0/1:95:50,44:50:1783:44:1569:-112.931,0,-132.184	0/1:157:85,72:85:3044:72:2566:-183.927,0,-226.928	0/1:154:98,56:98:3496:56:2008:-134.635,0,-268.493	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:110:1,109:1:36:109:3899:-347.505,-29.515,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:114:0,114:0:0:114:4050:-364.687,-34.3174,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	1/1:95:0,95:0:0:95:3389:-305.224,-28.5979,0	1/1:105:3,102:3:108:102:3657:-319.257,-21.533,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:106:0,106:0:0:106:3777:-340.128,-31.9092,0	0/1:172:75,97:75:2684:97:3457:-259.566,0,-190.028	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:88:0,88:0:0:88:3144:-283.186,-26.4906,0	1/1:132:1,131:1:36:131:4665:-416.414,-36.1377,0	0/1:133:81,52:81:2904:52:1868:-128.362,0,-221.558	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:94:0,94:0:0:94:3350:-301.716,-28.2968,0	1/1:109:0,109:0:0:109:3912:-352.271,-32.8123,0	1/1:24:0,24:0:0:24:853:-77.0894,-7.22472,0	0/1:65:31,34:31:1112:34:1216:-90.179,0,-80.8244	0/1:63:32,31:32:1139:31:1089:-79.3486,0,-83.8535	1/1:131:0,131:0:0:131:4675:-420.906,-39.4349,0	1/1:112:0,112:0:0:112:4000:-360.19,-33.7154,0	0/1:147:81,66:81:2882:66:2364:-168.767,0,-215.365	1/1:86:4,82:4:140:82:2944:-252.249,-12.944,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:137:74,63:74:2644:63:2260:-162.422,0,-196.966	0/1:104:53,51:53:1886:51:1832:-133.854,0,-138.71	0/1:217:110,107:110:3915:107:3826:-279.214,0,-287.219	0/1:116:65,51:65:2322:51:1822:-129.341,0,-174.319	0/1:63:42,21:42:1508:21:756:-49.4023,0,-117.05	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	0/1:124:49,75:49:1752:75:2686:-204.655,0,-120.636	0/1:50:20,30:20:707:30:1071:-81.6508,0,-48.9031	1/1:75:0,75:0:0:75:2680:-241.444,-22.5773,0	1/1:78:0,78:0:0:78:2808:-252.959,-23.4803,0	0/1:50:19,31:19:680:31:1107:-84.8887,0,-46.4777	0/1:66:35,31:35:1256:31:1116:-80.8837,0,-93.4773	0/1:74:52,22:52:1856:22:788:-48.9686,0,-145.044	1/1:97:0,97:0:0:97:3488:-314.13,-29.1999,0	1/1:137:0,137:0:0:137:4902:-441.332,-41.2411,0
chr01	30645467	.	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chr01	30710306	.	C	T	27117.7	PASS	AB=0.529856;ABP=26.6087;AC=42;AF=0.225806;AN=186;AO=1644;CIGAR=1X;DP=5692;DPB=5692;DPRA=1.8714;EPP=3572.91;EPPR=8777.93;GTI=3;LEN=1;MEANALT=1.03704;MQM=59.9939;MQMR=59.9867;NS=93;NUMALT=1;ODDS=0.685366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58276;QR=141554;RO=4045;RPL=1644;RPP=3572.91;RPPR=8743.24;RPR=0;RUN=1;SAF=1644;SAP=3572.91;SAR=0;SRF=4039;SRP=8734.58;SRR=6;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2068	0/1:93:35,58:35:1248:58:2055:-157.224,0,-84.6291	0/0:76:76,0:76:2638:0:0:0,-22.8783,-237.665	0/0:111:109,2:109:3813:2:68:0,-26.9566,-336.911	0/1:47:29,18:29:1008:18:636:-43.4196,0,-76.8797	0/1:42:15,27:15:536:27:945:-72.719,0,-35.9316	0/1:49:26,23:26:928:23:816:-59.0112,0,-69.0878	0/0:95:95,0:95:3325:0:0:0,-28.5978,-299.47	0/0:63:63,0:63:2220:0:0:0,-18.9649,-200.066	0/0:80:79,0:79:2741:0:0:0,-23.7814,-246.571	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	0/0:67:66,1:66:2283:1:36:0,-16.5707,-202.131	0/1:48:23,25:23:797:25:875:-64.6167,0,-57.5965	0/1:29:18,11:18:599:11:392:-26.8902,0,-45.4928	0/1:61:30,31:30:1036:31:1110:-81.8481,0,-75.1833	0/0:30:30,0:30:1038:0:0:0,-9.0309,-93.7276	0/0:42:41,1:41:1428:1:36:0,-9.04498,-125.215	0/1:31:18,13:18:621:13:468:-33.1277,0,-46.8793	0/1:27:6,21:6:208:21:739:-58.7046,0,-10.9313	0/1:152:77,75:77:2737:75:2666:-194.429,0,-200.815	0/1:122:61,61:61:2136:61:2156:-157.581,0,-155.779	0/1:120:37,83:37:1315:83:2925:-227.36,0,-82.5274	0/0:70:69,1:69:2441:1:36:0,-17.4738,-216.346	0/0:82:75,7:75:2642:7:248:0,-2.02026,-215.356	0/0:63:63,0:63:2201:0:0:0,-18.9649,-198.336	0/1:201:101,100:101:3548:100:3568:-260.819,0,-259.022	0/0:127:127,0:127:4455:0:0:0,-38.2308,-401.122	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.306	0/1:209:108,100:108:3812:100:3551:-256.824,0,-280.303	0/0:66:66,0:66:2327:0:0:0,-19.868,-209.691	0/0:69:69,0:69:2442:0:0:0,-20.7711,-220.035	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4154	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:174:83,91:83:2913:91:3246:-239.982,0,-210.028	0/1:128:50,78:50:1750:78:2767:-210.739,0,-119.248	0/1:45:24,21:24:847:21:729:-52.3818,0,-63.0024	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:79:32,47:32:1136:47:1648:-124.823,0,-78.7675	0/0:31:31,0:31:1054:0:0:0,-9.33193,-95.1647	0/0:80:79,1:79:2768:1:36:0,-20.4841,-245.762	0/0:63:63,0:63:2179:0:0:0,-18.9649,-196.375	0/0:48:48,0:48:1684:0:0:0,-14.4494,-151.844	0/0:34:34,0:34:1184:0:0:0,-10.235,-106.862	0/0:63:63,0:63:2230:0:0:0,-18.9649,-200.963	0/1:61:39,22:39:1345:22:771:-51.3475,0,-102.979	0/1:113:54,59:54:1915:59:2089:-154.262,0,-138.61	0/1:97:44,53:44:1531:53:1887:-140.908,0,-108.878	0/1:99:55,44:55:1938:44:1563:-111.159,0,-144.893	0/0:4:4,0:4:132:0:0:0,-1.20412,-12.2065	0/0:62:61,1:61:2144:1:36:0,-15.0656,-189.628	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:62:62,0:62:2174:0:0:0,-18.6639,-195.924	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	.:.:.:.:.:.:.:.	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/0:26:26,0:26:892:0:0:0,-7.82678,-80.5901	0/0:89:87,2:87:3042:2:72:0,-19.9549,-267.172	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:119:118,1:118:4125:1:36:0,-32.2243,-367.839	0/1:101:52,49:52:1824:49:1764:-128.64,0,-134.034	0/0:47:47,0:47:1619:0:0:0,-14.1484,-145.982	0/0:62:61,1:61:2137:1:36:0,-15.0656,-188.996	0/0:105:104,1:104:3621:1:36:0,-28.0099,-322.499	0/1:79:20,59:20:698:59:2109:-166.298,0,-39.3601	0/0:8:8,0:8:261:0:0:0,-2.40824,-23.808	0/0:49:49,0:49:1731:0:0:0,-14.7505,-156.074	0/0:45:43,2:43:1508:2:72:0,-6.70963,-129.174	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:62:30,32:30:1049:32:1114:-81.9003,0,-76.0541	0/1:56:34,22:34:1208:22:792:-54.748,0,-92.1684	0/0:40:39,1:39:1342:1:36:0,-8.44292,-117.473	0/0:79:78,1:78:2760:1:36:0,-20.1831,-245.046	0/1:60:28,32:28:979:32:1135:-84.3963,0,-70.3589	0/0:62:62,0:62:2174:0:0:0,-18.6639,-195.924	0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8427	0/1:62:27,34:27:960:34:1220:-91.3842,0,-67.9938	0/1:101:44,57:44:1559:57:1994:-149.326,0,-110.197	0/1:101:45,56:45:1563:56:1987:-148.7,0,-110.553	0/1:94:40,54:40:1392:54:1901:-143.069,0,-97.2774	0/1:43:18,25:18:597:25:896:-68.0161,0,-41.0965	0/0:62:62,0:62:2110:0:0:0,-18.6639,-190.163	0/1:107:60,47:60:2082:47:1632:-114.954,0,-155.437	0/1:32:16,16:16:563:16:572:-42.1805,0,-41.3662	0/0:48:48,0:48:1629:0:0:0,-14.4494,-146.893	0/0:31:31,0:31:1079:0:0:0,-9.33193,-97.4177	0/1:20:7,13:7:233:13:464:-36.0769,0,-15.2737	0/1:39:21,18:21:739:18:644:-46.5504,0,-55.0922	0/1:53:16,37:16:572:37:1310:-102.246,0,-35.8588	0/0:58:58,0:58:2015:0:0:0,-17.4597,-181.621	0/0:62:62,0:62:2192:0:0:0,-18.6639,-197.546
chr01	30712385	.	T	A	37799.8	PASS	AB=0.55403;ABP=104.614;AC=38;AF=0.204301;AN=186;AO=2230;CIGAR=1X;DP=7769;DPB=7769;DPRA=1.61456;EPP=4845.39;EPPR=12022.1;GTI=7;LEN=1;MEANALT=1.06522;MQM=59.9942;MQMR=59.9967;NS=93;NUMALT=1;ODDS=0.205135;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79017;QR=195713;RO=5535;RPL=2230;RPP=4845.39;RPPR=12022.1;RPR=0;RUN=1;SAF=2230;SAP=4845.39;SAR=0;SRF=5535;SRP=12022.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:71:30,41:30:1055:41:1443:-108.792,0,-73.8869	0/0:102:102,0:102:3622:0:0:0,-30.7051,-326.187	0/0:207:207,0:207:7327:0:0:0,-62.3132,-659.485	0/1:66:36,30:36:1271:30:1076:-77.2849,0,-94.8241	0/1:45:29,16:29:1008:16:555:-36.7291,0,-77.4817	0/1:119:54,65:54:1911:65:2315:-172.788,0,-136.444	0/0:173:173,0:173:6109:0:0:0,-52.0782,-549.917	0/0:122:122,0:122:4323:0:0:0,-36.7257,-389.247	0/0:53:53,0:53:1856:0:0:0,-15.9546,-167.317	0/0:32:32,0:32:1126:0:0:0,-9.63296,-101.647	0/0:93:93,0:93:3241:0:0:0,-27.9958,-291.914	0/1:58:30,28:30:1080:28:990:-71.9526,0,-80.0535	0/1:35:20,15:20:716:15:523:-36.8624,0,-54.2317	0/1:71:31,39:31:1093:39:1384:-103.427,0,-77.246	0/0:37:36,0:36:1266:0:0:0,-10.8371,-113.882	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:29:16,13:16:555:13:456:-32.6434,0,-41.5462	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	0/1:163:76,87:76:2685:87:3103:-230.43,0,-192.827	0/1:186:82,104:82:2913:104:3703:-277.482,0,-206.413	0/1:141:27,114:27:955:114:4072:-324.222,0,-43.8196	0/0:103:102,1:102:3616:1:36:0,-27.4078,-322.048	0/0:62:60,2:60:2127:2:72:0,-11.8271,-184.861	0/0:85:85,0:85:2997:0:0:0,-25.5875,-269.96	0/1:275:114,161:114:4008:161:5706:-430.881,0,-278.128	0/0:211:211,0:211:7489:0:0:0,-63.5173,-674.06	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/1:266:111,155:111:3887:155:5504:-415.415,0,-269.953	0/0:84:84,0:84:2951:0:0:0,-25.2865,-265.824	0/0:78:77,1:77:2715:1:36:0,-19.8821,-240.994	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:185:97,88:97:3429:88:3090:-222.641,0,-253.135	0/1:135:59,76:59:2072:76:2710:-203.505,0,-146.11	0/1:32:14,18:14:500:18:636:-47.9351,0,-35.7032	.:.:.:.:.:.:.:.	0/1:148:61,87:61:2175:87:3083:-233.148,0,-151.463	0/0:22:22,0:22:767:0:0:0,-6.62266,-69.3494	0/0:163:161,2:161:5733:2:72:0,-42.2312,-509.252	0/0:50:50,0:50:1762:0:0:0,-15.0515,-158.862	0/0:46:46,0:46:1616:0:0:0,-13.8474,-145.726	0/0:123:123,0:123:4353:0:0:0,-37.0267,-391.946	0/0:119:119,0:119:4202:0:0:0,-35.8226,-378.363	0/1:202:80,122:80:2821:122:4343:-330.239,0,-193.322	0/1:90:45,45:45:1596:45:1583:-115.667,0,-116.838	0/1:101:39,62:39:1383:62:2220:-169.66,0,-94.364	0/1:101:61,40:61:2188:40:1422:-97.8732,0,-166.782	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:97:97,0:97:3449:0:0:0,-29.1999,-310.623	0/0:74:74,0:74:2617:0:0:0,-22.2762,-235.777	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:81:81,0:81:2866:0:0:0,-24.3834,-258.178	0/0:60:60,0:60:2113:0:0:0,-18.0618,-190.438	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/0:80:80,0:80:2807:0:0:0,-24.0824,-252.87	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:158:158,0:158:5537:0:0:0,-47.5627,-498.463	0/1:216:119,97:119:4241:97:3424:-243.35,0,-316.847	0/0:33:32,1:32:1117:1:27:0,-7.23421,-98.1354	0/0:75:75,0:75:2621:0:0:0,-22.5772,-236.137	0/0:147:145,1:145:5155:1:36:0,-40.7119,-460.494	0/1:131:42,89:42:1484:89:3125:-242.042,0,-94.4196	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:63:63,0:63:2213:0:0:0,-18.9649,-199.434	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:165:65,100:65:2306:100:3543:-269.411,0,-158.13	0/1:96:56,40:56:1987:40:1412:-98.4784,0,-150.205	0/0:113:112,1:112:3931:1:36:0,-30.4181,-350.386	0/0:113:113,0:113:4039:0:0:0,-34.0164,-363.698	0/1:110:40,70:40:1404:70:2474:-189.8,0,-93.5439	0/0:52:51,1:51:1828:1:36:0,-12.0553,-161.203	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:80:31,49:31:1103:49:1751:-133.791,0,-75.4974	0/1:140:47,92:47:1668:92:3244:-250.018,0,-108.244	0/1:187:89,98:89:3166:98:3481:-257.209,0,-228.872	0/1:46:26,20:26:918:20:691:-48.6611,0,-69.0879	0/1:44:27,17:27:943:17:604:-41.4453,0,-71.9379	0/0:43:43,0:43:1500:0:0:0,-12.9443,-135.29	0/1:118:63,55:63:2214:55:1950:-140.253,0,-164.003	0/1:15:7,8:7:248:8:284:-21.3879,0,-18.1487	0/0:68:68,0:68:2369:0:0:0,-20.47,-213.469	0/0:58:58,0:58:2060:0:0:0,-17.4597,-185.672	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	0/1:56:29,27:29:1023:27:942:-68.2347,0,-75.5241	0/1:55:22,33:22:776:33:1144:-86.707,0,-53.6055	0/0:94:94,0:94:3344:0:0:0,-28.2968,-301.179	0/0:93:93,0:93:3292:0:0:0,-27.9958,-296.497
chr01	30756023	.	T	A	68956.7	PASS	AB=0.492911;ABP=5.53467;AC=39;AF=0.207447;AN=188;AO=2866;CIGAR=1X;DP=12420;DPB=12420;DPRA=1.3461;EPP=1287.41;EPPR=6017.92;GTI=1;LEN=1;MEANALT=1.02041;MQM=59.9819;MQMR=59.9934;NS=94;NUMALT=1;ODDS=2.51063;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101646;QR=340179;RO=9549;RPL=2332;RPP=2452.4;RPPR=4733.61;RPR=534;RUN=1;SAF=1550;SAP=44.4971;SAR=1316;SRF=4852;SRP=8.47366;SRR=4697;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:93:93,0:93:3314:0:0:0,-27.9958,-298.478	0/1:242:117,125:117:4098:125:4452:-328.004,0,-296.159	0/0:218:218,0:218:7766:0:0:0,-65.6245,-698.972	0/0:202:202,0:202:7148:0:0:0,-60.8081,-643.251	0/1:71:45,26:45:1608:26:916:-61.3828,0,-123.637	0/1:77:37,40:37:1297:40:1440:-106.718,0,-93.8496	0/1:120:63,57:63:2219:57:2036:-147.389,0,-163.849	0/0:254:253,0:253:9023:0:0:0,-76.1606,-811.81	0/0:205:205,0:205:7327:0:0:0,-61.7111,-659.476	0/0:148:148,0:148:5266:0:0:0,-44.5524,-474.079	0/0:136:136,0:136:4842:0:0:0,-40.9401,-435.936	0/0:175:173,0:173:6146:0:0:0,-52.0782,-552.879	0/1:148:76,72:76:2732:72:2562:-186.277,0,-201.57	0/1:146:71,75:71:2548:75:2671:-196.685,0,-185.62	0/1:141:70,71:70:2508:71:2535:-185.956,0,-183.527	0/0:121:121,0:121:4300:0:0:0,-36.4246,-387.178	0/0:138:137,1:137:4788:1:36:0,-37.9439,-427.483	0/1:109:56,53:56:1990:53:1856:-134.505,0,-146.561	0/1:102:51,51:51:1823:51:1801:-131.665,0,-133.645	0/1:206:105,101:105:3741:101:3615:-263.543,0,-274.878	0/1:264:129,135:129:4577:135:4824:-354.844,0,-332.626	0/1:56:19,37:19:680:37:1308:-101.164,0,-44.6715	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:130:124,6:124:4408:6:212:0,-19.7091,-377.468	0/0:108:108,0:108:3859:0:0:0,-32.5112,-347.505	0/1:308:152,156:152:5445:156:5485:-401.068,0,-397.459	0/0:352:352,0:352:12592:0:0:0,-105.963,-1133.11	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.889	0/1:205:107,98:107:3829:98:3492:-252.781,0,-283.094	0/0:134:134,0:134:4782:0:0:0,-40.338,-430.537	0/0:143:142,1:142:5054:1:36:0,-39.449,-451.407	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:9:3,6:3:108:6:207:-16.2576,0,-7.3659	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:372:192,180:192:6863:180:6387:-462.939,0,-505.754	0/1:109:62,47:62:2220:47:1650:-115.974,0,-167.252	0/1:114:54,60:54:1900:60:2139:-158.46,0,-136.958	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:203:123,80:123:4395:80:2860:-196.529,0,-334.614	0/0:54:54,0:54:1922:0:0:0,-16.2556,-173.256	0/0:202:202,0:202:7207:0:0:0,-60.8081,-648.685	0/0:125:125,0:125:4467:0:0:0,-37.6287,-402.2	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.821	0/0:143:142,1:142:5091:1:36:0,-39.449,-454.734	0/0:162:162,0:162:5789:0:0:0,-48.7669,-521.124	0/1:209:119,90:119:4250:90:3162:-221.89,0,-319.763	0/1:117:48,69:48:1709:69:2415:-182.385,0,-118.873	0/1:167:89,78:89:3188:78:2749:-197.381,0,-236.382	0/1:172:91,81:91:3199:81:2869:-206.67,0,-236.355	0/0:17:17,0:17:575:0:0:0,-5.11751,-52.0669	0/0:149:148,1:148:5267:1:36:0,-41.2552,-470.571	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:130:130,0:130:4642:0:0:0,-39.1339,-417.942	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:30:20,10:20:716:10:360:-23.7134,0,-55.7368	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/0:171:170,1:170:6065:1:36:0,-47.8779,-542.355	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:137:136,0:136:4852:0:0:0,-40.9401,-436.473	0/1:196:101,95:101:3617:95:3354:-243.076,0,-266.732	0/0:140:140,0:140:4978:0:0:0,-42.1442,-448.171	0/0:124:123,1:123:4347:1:36:0,-33.7294,-387.809	0/0:237:236,1:236:8405:1:36:0,-67.7458,-752.858	0/1:111:42,69:42:1495:69:2437:-186.162,0,-101.429	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/0:103:103,0:103:3652:0:0:0,-31.0061,-328.885	0/0:131:131,0:131:4653:0:0:0,-39.4349,-418.934	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:109:68,41:68:2423:41:1441:-97.1716,0,-185.513	0/1:117:61,56:61:2184:56:1985:-143.702,0,-161.605	0/0:175:175,0:175:6257:0:0:0,-52.6802,-563.224	0/0:195:195,0:195:6909:0:0:0,-58.7008,-621.88	0/1:101:43,58:43:1531:58:2060:-155.267,0,-107.678	0/0:165:164,1:164:5837:1:36:0,-46.0717,-521.846	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/1:157:85,72:85:3006:72:2535:-181.141,0,-223.508	0/1:120:62,58:62:2210:58:2049:-148.556,0,-163.04	0/1:282:153,129:153:5471:129:4580:-327.479,0,-407.627	0/1:115:64,51:64:2283:51:1806:-128.201,0,-171.113	0/1:123:64,59:64:2284:59:2107:-152.872,0,-168.795	0/0:140:140,0:140:4964:0:0:0,-42.1442,-446.909	0/1:289:138,150:138:4905:150:5319:-391.799,0,-354.557	0/1:52:18,34:18:633:34:1207:-93.2812,0,-41.6415	0/0:199:198,1:198:7041:1:20:0,-57.905,-631.756	0/0:115:115,0:115:4120:0:0:0,-34.6184,-370.984	0/1:91:36,55:36:1279:55:1968:-150.001,0,-88.0187	0/1:123:59,64:59:2116:64:2275:-167.985,0,-153.682	0/1:101:39,62:39:1373:62:2212:-168.94,0,-93.4626	0/0:113:113,0:113:4010:0:0:0,-34.0164,-361.089	0/0:201:201,0:201:7174:0:0:0,-60.507,-645.718
chr01	30761811	.	C	T	156895	PASS	AB=0.521554;ABP=16.3028;AC=148;AF=0.787234;AN=188;AO=5880;CIGAR=1X;DP=7476;DPB=7476;DPRA=0;EPP=1539.88;EPPR=319.5;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.6636;MQMR=59.9228;NS=94;NUMALT=1;ODDS=2.25599;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209215;QR=56511;RO=1594;RPL=5868;RPP=12667.3;RPPR=3446.99;RPR=12;RUN=1;SAF=3948;SAP=1503.93;SAR=1932;SRF=1036;SRP=314.269;SRR=558;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:28:14,14:14:487:14:504:-37.2693,0,-35.7294	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:65:0,65:0:0:65:2292:-206.495,-19.567,0	0/1:34:26,8:26:928:8:288:-16.0324,0,-73.6032	0/1:36:16,20:16:572:20:716:-53.9306,0,-40.9763	0/1:50:22,28:22:774:28:1004:-75.622,0,-54.9287	1/1:42:0,42:0:0:42:1482:-133.662,-12.6433,0	1/1:53:0,53:0:0:53:1894:-170.738,-15.9546,0	1/1:37:0,37:0:0:37:1328:-119.794,-11.1381,0	1/1:280:1,279:1:27:279:9957:-893.236,-81.5886,0	1/1:110:0,110:0:0:110:3907:-351.75,-33.1133,0	0/1:89:37,52:37:1314:52:1847:-139.658,0,-91.7677	0/1:79:32,47:32:1152:47:1688:-128.421,0,-80.2079	0/1:76:30,46:30:1067:46:1638:-124.826,0,-73.4629	1/1:85:0,85:0:0:85:3010:-271.116,-25.5876,0	1/1:62:0,62:0:0:62:2216:-199.704,-18.6639,0	0/1:54:24,30:24:864:30:1076:-80.7552,0,-61.8269	0/1:110:52,58:52:1844:58:2080:-154.343,0,-133.123	0/1:38:15,23:15:540:23:828:-63.405,0,-37.4974	0/1:46:22,24:22:784:24:847:-62.6879,0,-57.0365	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:34:0,34:0:0:34:1182:-106.309,-10.235,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/1:85:36,49:36:1264:49:1745:-131.728,0,-88.4722	1/1:53:0,53:0:0:53:1896:-170.903,-15.9546,0	1/1:43:0,43:0:0:43:1528:-137.766,-12.9443,0	0/1:58:21,37:21:752:37:1316:-101.281,0,-50.5015	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:48:0,48:0:0:48:1712:-154.204,-14.4494,0	1/1:139:0,139:0:0:139:4962:-446.16,-41.8432,0	1/1:96:0,96:0:0:96:3408:-306.92,-28.8989,0	0/1:104:68,35:68:2384:35:1256:-82.1182,0,-183.592	1/1:171:1,170:1:36:170:6039:-539.904,-47.8779,0	1/1:215:1,214:1:36:214:7602:-680.484,-61.1232,0	0/1:169:79,90:79:2798:90:3204:-237.708,0,-201.187	0/1:28:14,14:14:500:14:500:-36.9073,0,-36.9073	0/1:248:116,132:116:4070:132:4675:-346.18,0,-291.829	0/1:89:41,48:41:1472:48:1728:-129.001,0,-105.555	0/1:38:12,26:12:420:26:932:-72.7597,0,-26.6949	1/1:150:0,150:0:0:150:5343:-480.941,-45.1545,0	1/1:41:1,40:1:36:40:1428:-125.215,-8.74396,0	1/1:66:1,65:1:36:65:2305:-204.093,-16.2697,0	1/1:64:0,64:0:0:64:2262:-203.842,-19.2659,0	1/1:23:0,23:0:0:23:824:-74.4815,-6.92369,0	1/1:17:1,16:1:36:16:559:-47.0383,-1.51924,0	0/1:77:38,39:38:1351:39:1387:-101.946,0,-98.7103	0/1:31:16,15:16:576:15:531:-38.7313,0,-42.8431	0/1:41:24,17:24:856:17:612:-43.0712,0,-65.0189	0/1:35:22,13:22:792:13:464:-31.5615,0,-61.0696	1/1:145:1,144:1:36:144:5156:-460.485,-40.0511,0	1/1:24:0,24:0:0:24:826:-74.6435,-7.22472,0	1/1:26:0,26:0:0:26:924:-83.4661,-7.82678,0	1/1:55:0,55:0:0:55:1955:-176.207,-16.5567,0	1/1:37:0,37:0:0:37:1290:-116.397,-11.1381,0	1/1:21:0,21:0:0:21:739:-66.8324,-6.32163,0	1/1:142:0,142:0:0:142:5056:-455.167,-42.7463,0	0/1:81:38,43:38:1364:43:1535:-114.056,0,-98.6773	1/1:36:0,36:0:0:36:1288:-116.219,-10.8371,0	1/1:90:0,90:0:0:90:3222:-290.108,-27.0927,0	1/1:102:1,101:1:36:101:3617:-322.1,-27.1068,0	1/1:28:0,28:0:0:28:966:-87.2472,-8.42884,0	0/1:48:27,21:27:960:21:756:-53.887,0,-72.2668	1/1:15:0,15:0:0:15:537:-48.6653,-4.51545,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:32:1,31:1:36:31:1104:-96.0439,-6.03469,0	0/1:27:19,8:19:680:8:288:-18.1396,0,-53.4014	1/1:294:5,289:5:176:289:10296:-910.202,-72.3178,0	1/1:20:0,20:0:0:20:693:-62.6568,-6.0206,0	1/1:98:0,98:0:0:98:3493:-314.479,-29.5009,0	1/1:114:2,112:2:72:112:3982:-351.528,-27.4807,0	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	0/1:38:23,15:23:819:15:532:-36.7739,0,-62.5915	1/1:89:1,88:1:36:88:3129:-278.236,-23.1934,0	1/1:58:0,58:0:0:58:2050:-184.771,-17.4597,0	0/1:30:15,15:15:540:15:536:-39.5439,0,-39.9056	1/1:49:3,46:3:104:46:1623:-136.651,-5.04766,0	1/1:192:0,192:0:0:192:6864:-617.131,-57.7978,0	0/1:50:25,25:25:884:25:892:-65.5482,0,-64.8269	0/1:37:16,21:16:563:21:743:-56.047,0,-39.8611	0/1:66:24,42:24:860:42:1496:-115.067,0,-57.8515	0/1:92:39,53:39:1381:53:1863:-140.251,0,-96.5214	0/1:83:45,38:45:1579:38:1368:-98.4353,0,-117.411	1/1:99:0,99:0:0:99:3532:-318.077,-29.802,0	0/1:140:66,74:66:2355:74:2614:-193.305,0,-170.064	0/1:30:14,16:14:491:16:564:-42.0594,0,-35.4902	1/1:97:0,97:0:0:97:3442:-309.965,-29.1999,0	1/1:83:0,83:0:0:83:2944:-265.071,-24.9855,0	0/1:346:161,184:161:5667:184:6520:-482.609,0,-406.024	0/1:477:239,238:239:8468:238:8457:-617.48,0,-618.535	0/1:72:32,40:32:1132:40:1428:-107.141,0,-80.5144	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:145:0,145:0:0:145:5129:-461.735,-43.6494,0
chr01	30781611	.	A	G	15456.2	PASS	AB=0.518642;ABP=8.43475;AC=38;AF=0.202128;AN=188;AO=937;CIGAR=1X;DP=3730;DPB=3730;DPRA=1.3948;EPP=2037.68;EPPR=6033.22;GTI=2;LEN=1;MEANALT=1.04762;MQM=59.9381;MQMR=59.9871;NS=94;NUMALT=1;ODDS=0.10181;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33360;QR=99553;RO=2789;RPL=937;RPP=2037.68;RPPR=6033.22;RPR=0;RUN=1;SAF=0;SAP=2037.68;SAR=937;SRF=0;SRP=6059.25;SRR=2789;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:36:15,21:15:536:21:756:-57.5301,0,-37.7377	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/1:21:9,12:9:320:12:432:-32.8996,0,-22.8207	0/1:26:11,15:11:396:15:531:-40.2951,0,-28.156	0/1:53:21,32:21:756:32:1120:-85.1512,0,-52.4126	0/0:44:43,1:43:1532:1:36:0,-9.64704,-134.575	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2452	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:40:21,19:21:752:19:680:-49.488,0,-55.9651	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:24:11,13:11:396:13:464:-34.8728,0,-28.758	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:13:13,0:13:445:0:0:0,-3.91339,-40.3754	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:66:34,32:34:1216:32:1148:-83.7619,0,-89.8786	0/1:76:43,33:43:1535:33:1175:-83.1787,0,-115.564	0/1:44:18,26:18:648:26:928:-70.5929,0,-45.4066	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:19:18,1:18:639:1:36:0,-2.12129,-54.24	0/0:28:28,0:28:988:0:0:0,-8.42884,-89.2339	0/1:116:42,72:42:1489:72:2530:-193.27,0,-99.6255	0/0:119:119,0:119:4245:0:0:0,-35.8226,-382.229	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:103:57,46:57:2052:46:1628:-115.802,0,-153.945	0/0:70:68,2:68:2421:2:72:0,-14.2354,-211.308	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:65:38,27:38:1364:27:968:-67.8704,0,-103.494	0/1:66:28,38:28:989:38:1368:-103.553,0,-69.454	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:59:37,22:37:1328:22:775:-52.3104,0,-102.061	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7228	0/0:37:37,0:37:1305:0:0:0,-11.1381,-117.749	0/0:30:29,0:29:1044:0:0:0,-8.72987,-93.9729	0/1:94:62,31:62:2215:31:1112:-72.0358,0,-171.258	0/1:36:19,17:19:676:17:608:-44.2149,0,-50.3309	0/1:75:45,30:45:1604:30:1076:-74.5756,0,-122.073	0/1:96:41,55:41:1468:55:1963:-148.045,0,-103.517	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:8:2,6:2:57:6:216:-17.3823,0,-3.00507	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:124:124,0:124:4437:0:0:0,-37.3277,-399.499	0/1:95:50,45:50:1788:45:1606:-116.232,0,-132.548	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:46:45,1:45:1607:1:36:0,-10.2491,-141.321	0/1:65:23,42:23:828:42:1496:-115.368,0,-55.2772	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:67:25,42:25:888:42:1491:-114.125,0,-60.07	0/1:50:18,32:18:644:32:1148:-88.5783,0,-43.2391	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.907	0/1:44:14,30:14:504:30:1065:-82.9144,0,-32.4528	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:43:23,20:23:824:20:716:-51.8152,0,-61.539	0/1:43:26,17:26:928:17:599:-41.2938,0,-70.894	0/1:85:27,58:27:964:58:2054:-159.54,0,-61.4893	0/1:42:25,17:25:900:17:608:-42.4088,0,-68.6778	0/1:10:5,5:5:176:5:171:-12.7152,0,-13.1747	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:39:21,18:21:756:18:644:-46.5504,0,-56.6271	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:33:17,16:17:608:16:564:-41.1563,0,-45.118	0/1:19:6,13:6:216:13:464:-36.3733,0,-14.0709	0/0:119:119,0:119:4234:0:0:0,-35.8226,-381.237	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701
chr01	30812347	.	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chr01	30817109	.	C	A	23475.7	PASS	AB=0.565146;ABP=92.6976;AC=40;AF=0.215054;AN=186;AO=1377;CIGAR=1X;DP=4667;DPB=4667;DPRA=1.41301;EPP=2993.13;EPPR=7134.13;GTI=4;LEN=1;MEANALT=1.04762;MQM=59.9455;MQMR=59.9647;NS=93;NUMALT=1;ODDS=0.289568;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48950;QR=116563;RO=3288;RPL=1377;RPP=2993.13;RPPR=7134.13;RPR=0;RUN=1;SAF=1377;SAP=2993.13;SAR=0;SRF=3288;SRP=7142.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.695	0/1:37:16,21:16:563:21:752:-56.8681,0,-39.8611	0/0:57:57,0:57:2018:0:0:0,-17.1587,-181.892	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.14	0/1:19:11,8:11:379:8:280:-19.8197,0,-28.721	0/1:20:13,7:13:451:7:233:-15.2737,0,-34.8992	0/1:31:11,20:11:379:20:712:-55.0747,0,-25.1086	0/0:86:86,0:86:3064:0:0:0,-25.8886,-275.982	0/0:67:67,0:67:2376:0:0:0,-20.169,-214.096	0/0:33:33,0:33:1163:0:0:0,-9.93399,-104.976	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/0:75:75,0:75:2657:0:0:0,-22.5772,-239.375	0/1:74:33,41:33:1179:41:1457:-109.148,0,-84.141	0/1:62:35,27:35:1241:27:972:-69.134,0,-93.3286	0/1:54:32,22:32:1129:22:745:-51.1041,0,-85.6607	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/0:18:18,0:18:628:0:0:0,-5.41854,-56.8455	0/1:21:11,10:11:387:10:360:-26.4227,0,-28.8443	0/1:34:15,19:15:527:19:684:-51.6553,0,-37.5252	0/1:72:32,40:32:1152:40:1395:-104.168,0,-82.316	0/1:132:60,72:60:2135:72:2588:-193.432,0,-152.682	0/1:57:15,42:15:528:42:1471:-115.519,0,-30.6927	0/0:77:77,0:77:2724:0:0:0,-23.1793,-245.405	0/1:39:35,4:35:1256:4:144:-1.57345,0,-101.605	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/1:122:53,69:53:1874:69:2435:-182.671,0,-132.212	0/0:136:136,0:136:4811:0:0:0,-40.9401,-433.134	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:111:45,65:45:1581:65:2306:-174.474,0,-108.982	0/0:77:77,0:77:2729:0:0:0,-23.1793,-245.853	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.58	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:162:82,79:82:2875:79:2817:-204.942,0,-210.162	0/1:83:40,43:40:1427:43:1533:-113.276,0,-103.741	0/1:40:25,15:25:888:15:540:-36.8953,0,-68.1978	.:.:.:.:.:.:.:.	0/1:59:26,33:26:928:33:1180:-88.7473,0,-66.0775	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/0:80:80,0:80:2804:0:0:0,-24.0824,-252.598	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.76	0/0:40:40,0:40:1391:0:0:0,-12.0412,-125.483	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.864	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:75:22,53:22:784:53:1878:-146.718,0,-48.3067	0/1:56:30,26:30:1072:26:921:-66.3475,0,-79.9348	0/1:59:31,28:31:1100:28:1004:-72.9151,0,-81.5495	0/1:83:24,59:24:833:59:2120:-166.083,0,-50.2994	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/0:80:80,0:80:2847:0:0:0,-24.0824,-256.468	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:88:88,0:88:3126:0:0:0,-26.4906,-281.567	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:65:64,1:64:2245:1:36:0,-15.9687,-198.715	0/1:72:22,50:22:788:50:1796:-140.248,0,-49.5706	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/1:99:26,73:26:928:73:2597:-204.175,0,-54.0339	0/0:22:22,0:22:766:0:0:0,-6.62266,-69.2585	0/0:12:11,1:11:388:1:36:0,-0.0140849,-31.6591	0/0:44:44,0:44:1545:0:0:0,-13.2453,-139.34	0/0:16:16,0:16:550:0:0:0,-4.81648,-49.8234	0/1:90:37,53:37:1307:53:1900:-144.185,0,-90.838	0/1:31:13,18:13:468:18:627:-47.4178,0,-33.1277	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/1:50:18,32:18:648:32:1148:-88.5783,0,-43.6004	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.575	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:36:9,27:9:324:27:964:-76.2397,0,-18.6688	0/1:41:20,21:20:701:21:739:-54.4901,0,-51.0695	0/1:70:26,44:26:936:44:1556:-119.257,0,-63.4874	0/1:62:22,40:22:788:40:1415:-108.982,0,-52.5809	0/1:40:18,22:18:644:22:788:-59.2036,0,-46.2494	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/1:115:54,61:54:1899:61:2174:-161.303,0,-136.479	0/1:18:9,9:9:316:9:324:-24.0873,0,-23.3603	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.551	0/0:52:52,0:52:1821:0:0:0,-15.6536,-164.166	0/1:31:12,19:12:415:19:680:-52.1972,0,-28.3484	0/1:101:39,62:39:1378:62:2228:-170.38,0,-93.9132	0/1:64:27,37:27:968:37:1275:-95.7784,0,-68.1714	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.441
chr01	30860362	.	C	A	95800.4	PASS	AB=0.604348;ABP=242.288;AC=150;AF=0.797872;AN=188;AO=4484;CIGAR=1X;DP=5495;DPB=5495;DPRA=0;EPP=9739.89;EPPR=2189.68;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9967;MQMR=59.998;NS=94;NUMALT=1;ODDS=1.16279;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160527;QR=35975;RO=1007;RPL=4484;RPP=9739.89;RPPR=2189.68;RPR=0;RUN=1;SAF=0;SAP=9739.89;SAR=4484;SRF=0;SRP=2189.68;SRR=1007;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:52:22,30:22:788:30:1072:-81.1389,0,-55.5903	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:161:1,160:1:21:160:5735:-514.165,-46.3659,0	0/1:43:16,27:16:568:27:968:-74.4931,0,-38.5076	0/1:30:12,18:12:428:18:644:-49.2597,0,-29.8279	0/1:116:42,74:42:1496:74:2652:-204.007,0,-100.015	1/1:152:0,152:0:0:152:5447:-490.356,-45.7566,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:97:0,97:0:0:97:3460:-311.611,-29.1999,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	0/1:23:8,15:8:288:15:536:-41.6511,0,-19.3437	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:126:48,78:48:1716:78:2792:-213.591,0,-116.796	0/1:65:23,42:23:828:42:1512:-116.808,0,-55.2772	0/1:75:38,37:38:1360:37:1328:-97.245,0,-100.123	1/1:161:0,161:0:0:161:5788:-521.031,-48.4658,0	1/1:141:3,138:3:108:138:4937:-434.403,-32.3701,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	0/1:223:95,128:95:3385:128:4569:-344.245,0,-237.735	1/1:95:0,95:0:0:95:3392:-305.495,-28.5979,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:122:51,71:51:1828:71:2540:-192.125,0,-128.075	1/1:92:1,91:1:36:91:3250:-289.122,-24.0965,0	1/1:122:0,122:0:0:122:4372:-393.653,-36.7257,0	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:75:35,40:35:1260:40:1436:-106.96,0,-91.1282	0/1:148:34,114:34:1220:114:4086:-323.371,0,-65.5544	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:60:28,32:28:993:32:1148:-85.568,0,-71.6207	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:77:0,76:0:0:76:2732:-245.762,-22.8783,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:109:0,108:0:0:108:3876:-348.674,-32.5112,0	1/1:88:0,88:0:0:88:3148:-283.546,-26.4906,0	0/1:106:49,57:49:1749:57:2052:-153.042,0,-125.783	0/1:88:34,54:34:1201:54:1940:-148.386,0,-81.903	0/1:119:39,80:39:1392:80:2848:-220.735,0,-89.7564	0/1:108:46,62:46:1648:62:2223:-167.823,0,-116.097	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	1/1:82:0,82:0:0:82:2921:-263.123,-24.6845,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:127:0,127:0:0:127:4550:-409.665,-38.2308,0	0/1:179:59,120:59:2112:120:4299:-333.202,0,-136.465	1/1:95:0,95:0:0:95:3392:-305.493,-28.5979,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:94:0,94:0:0:94:3360:-302.617,-28.2968,0	0/1:79:36,43:36:1273:43:1539:-115.022,0,-91.0896	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:44:0,44:0:0:44:1575:-142.041,-13.2453,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:66:25,41:25:896:41:1457:-111.556,0,-61.0924	0/1:40:21,19:21:756:19:676:-49.1268,0,-56.326	1/1:79:1,78:1:36:78:2760:-245.043,-20.1831,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:61:20,41:20:716:41:1472:-114.413,0,-46.4049	1/1:48:2,46:2:72:46:1641:-141.138,-7.61272,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	0/1:50:20,29:20:697:29:1040:-78.8041,0,-47.9409	0/1:54:29,25:29:1040:25:900:-65.0654,0,-77.6587	0/1:125:43,82:43:1532:82:2944:-227.565,0,-100.544	0/1:81:36,45:36:1292:45:1596:-119.544,0,-92.2003	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:43:18,24:18:648:24:864:-65.0795,0,-45.6488	0/1:28:8,20:8:288:20:708:-55.6168,0,-17.8386	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0
chr01	30863175	.	TGAA	CGAT,CGAA	255581	PASS	AB=0.468484,0.528308;ABP=56.8005,46.4081;AC=149,39;AF=0.792553,0.207447;AN=188;AO=8552,3318;CIGAR=1X2M1X,1X3M;DP=11915;DPB=11944.5;DPRA=0,1.73726;EPP=18573.4,7207.96;EPPR=7.35324;GTI=8;LEN=4,1;MEANALT=1.94681,2.41667;MQM=59.7059,59.978;MQMR=60;NS=94;NUMALT=2;ODDS=0.182183;PAIRED=0,0;PAIREDR=0;PAO=88,14.5;PQA=2952,47.5;PQR=13.5;PRO=13.5;QA=299598,117423;QR=60;RO=2;RPL=8552,3061;RPP=18573.4,5148.59;RPPR=3.0103;RPR=0,257;RUN=1,1;SAF=8552,3061;SAP=18573.4,5148.59;SAR=0,257;SRF=1;SRP=3.0103;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,58,1:0:0:58,1:2025,36:-182.113,-17.4597,0,-179.175,-14.1625,-178.874	1/2:226:0,107,118:0:0:107,118:3753,4209:-648.423,-343.109,-310.899,-305.307,0,-269.786	1/1:125:0,124,0:0:0:124,0:4337,0:-390.155,-37.3277,0,-390.155,-37.3277,-390.155	1/1:276:0,276,0:0:0:276,0:9732,0:-875.49,-83.0843,0,-875.49,-83.0843,-875.49	1/2:71:0,35,35:0:0:35,35:1233,1224:-199.944,-99.5625,-89.0264,-100.373,0,-89.8371	1/2:73:0,33,40:0:0:33,40:1164,1404:-208.996,-114.247,-104.313,-94.7409,0,-82.6997	1/2:209:0,108,100:0:0:108,100:3786,3570:-599.088,-291.016,-258.504,-308.037,0,-277.934	1/1:232:0,231,1:0:0:231,1:8051,36:-724.226,-69.5379,0,-721.289,-66.6005,-720.988	1/1:167:0,167,0:0:0:167,0:5837,0:-525.091,-50.272,0,-525.091,-50.272,-525.091	1/1:194:0,191,0:0:0:191,0:6671,0:-600.088,-57.4967,0,-600.088,-57.4967,-600.088	1/1:58:0,57,0:0:0:57,0:1984,0:-178.477,-17.1587,0,-178.477,-17.1587,-178.477	1/1:83:0,83,0:0:0:83,0:2880,0:-259.435,-24.9855,0,-259.435,-24.9855,-259.435	1/2:94:0,40,54:0:0:40,54:1384,1891:-266.311,-153.85,-141.809,-112.45,0,-96.1939	1/2:68:0,32,36:0:0:32,36:1107,1251:-191.858,-101.906,-92.2728,-90.1502,0,-79.3131	1/2:94:0,34,59:0:0:34,59:1203,2070:-266.464,-168.476,-158.24,-98.009,0,-80.2482	1/1:52:0,52,0:0:0:52,0:1850,0:-166.758,-15.6536,0,-166.758,-15.6536,-166.758	1/1:93:0,93,0:0:0:93,0:3274,0:-294.854,-27.9958,0,-294.854,-27.9958,-294.854	1/2:88:0,48,39:0:0:48,39:1704,1372:-250.504,-111.676,-97.2266,-138.821,0,-127.081	1/2:63:0,31,32:0:0:31,32:1063,1093:-175.33,-89.0378,-79.7059,-86.6347,0,-77.0017	1/2:203:0,114,89:0:0:114,89:3981,3155:-581.187,-257.382,-223.065,-324.157,0,-297.365	1/2:173:0,91,81:0:0:91,81:3191,2859:-492.456,-232.804,-205.41,-259.645,0,-235.261	1/2:155:0,50,105:0:0:50,105:1755,3723:-446.49,-303.663,-288.612,-143.179,0,-111.571	1/1:137:0,137,0:0:0:137,0:4806,0:-432.25,-41.2411,0,-432.25,-41.2411,-432.25	1/1:173:0,162,11:0:0:162,11:5678,396:-510.766,-48.7669,0,-478.454,-16.0954,-475.142	1/1:129:0,129,0:0:0:129,0:4545,0:-408.694,-38.8329,0,-408.694,-38.8329,-408.694	1/2:607:0,282,322:0:0:282,322:9881,11444:-1736.64,-932.662,-847.771,-804.082,0,-707.151	1/1:243:0,243,0:0:0:243,0:8551,0:-769.261,-73.1503,0,-769.261,-73.1503,-769.261	1/1:38:0,38,0:0:0:38,0:1319,0:-118.933,-11.4391,0,-118.933,-11.4391,-118.933	1/2:471:0,176,293:0:0:176,293:6190,10362:-1347.81,-843.945,-790.963,-503.908,0,-415.707	1/1:106:0,106,0:0:0:106,0:3702,0:-332.995,-31.9092,0,-332.995,-31.9092,-332.995	1/1:183:0,182,1:0:0:182,1:6373,36:-573.301,-54.7875,0,-570.363,-51.8434,-570.062	1/1:9:0,9,0:0:0:9,0:315,0:-28.6876,-2.70927,0,-28.6876,-2.70927,-28.6876	1/1:12:0,11,0:0:0:11,0:395,0:-35.5743,-3.31133,0,-35.5743,-3.31133,-35.5743	1/1:3:0,3,0:0:0:3,0:96,0:-8.95758,-0.90309,0,-8.95758,-0.90309,-8.95758	1/1:5:0,5,0:0:0:5,0:179,0:-16.4604,-1.50515,0,-16.4604,-1.50515,-16.4604	1/1:2:0,2,0:0:0:2,0:65,0:-6.17329,-0.60206,0,-6.17329,-0.60206,-6.17329	1/2:340:1,133,206:1:30:133,206:4693,7261:-970.675,-588.839,-551.2,-379.792,0,-320.178	1/2:189:0,99,89:0:0:99,89:3506,3164:-542.662,-257.857,-228.055,-284.824,0,-258.033	1/2:79:0,42,37:0:0:42,37:1455,1316:-225.649,-107.604,-94.9604,-118.397,0,-107.259	1/2:7:0,3,4:0:0:3,4:107,144:-20.8306,-12.1095,-11.2064,-9.07908,0,-7.87496	1/2:148:0,76,72:0:0:76,72:2657,2553:-424.122,-207.986,-185.108,-216.128,0,-194.454	1/1:32:0,32,0:0:0:32,0:1118,0:-100.552,-9.63296,0,-100.552,-9.63296,-100.552	1/1:205:0,205,0:0:0:205,0:7209,0:-648.501,-61.7112,0,-648.501,-61.7112,-648.501	1/1:106:0,105,0:0:0:105,0:3647,0:-328.077,-31.6082,0,-328.077,-31.6082,-328.077	1/1:78:0,78,0:0:0:78,0:2722,0:-244.85,-23.4803,0,-244.85,-23.4803,-244.85	1/1:133:0,132,1:0:0:132,1:4581,36:-412.087,-39.736,0,-409.149,-36.4387,-408.848	1/1:72:0,71,0:0:0:71,0:2482,0:-223.222,-21.3731,0,-223.222,-21.3731,-223.222	1/2:249:0,122,126:0:0:122,126:4242,4439:-706.279,-361.393,-324.668,-344.876,0,-306.947	1/2:164:0,85,79:0:0:85,79:3015,2803:-474.275,-228.729,-203.142,-245.901,0,-222.119	1/2:225:0,103,122:0:0:103,122:3594,4303:-642.576,-350.274,-319.268,-292.233,0,-255.507	1/2:218:0,106,112:0:0:106,112:3741,3949:-626.375,-321.879,-289.969,-304.849,0,-271.133	1/1:2:0,2,0:0:0:2,0:66,0:-6.26795,-0.60206,0,-6.26795,-0.60206,-6.26795	1/1:108:0,106,0:0:0:106,0:3681,0:-331.149,-31.9092,0,-331.149,-31.9092,-331.149	1/1:64:0,64,0:0:0:64,0:2246,0:-202.003,-19.2659,0,-202.003,-19.2659,-202.003	1/1:6:0,6,0:0:0:6,0:215,0:-19.6992,-1.80618,0,-19.6992,-1.80618,-19.6992	1/1:109:0,109,0:0:0:109,0:3795,0:-3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chr01	30873024	.	T	C	543.528	PASS	AB=0.156587;ABP=1900.1;AC=37;AF=0.198925;AN=186;AO=442;CIGAR=1X;DP=6199;DPB=6199;DPRA=2.43583;EPP=945.508;EPPR=12502;GTI=28;LEN=1;MEANALT=1.01333;MQM=59.914;MQMR=43.7894;NS=93;NUMALT=1;ODDS=125.152;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15805;QR=204196;RO=5756;RPL=1;RPP=954.135;RPPR=12502;RPR=441;RUN=1;SAF=441;SAP=954.135;SAR=1;SRF=5756;SRP=12502;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:18,6:18:636:6:216:-12.5658,0,-49.44	0/0:22:21,1:21:752:1:36:0,-3.02438,-62.4569	0/0:113:111,2:111:3954:2:68:0,-27.5587,-342.004	0/0:207:202,5:202:7167:5:180:0,-45.7611,-616.696	0/1:7:5,2:5:176:2:72:-4.72951,0,-13.1724	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.2996	0/0:32:32,0:32:1128:0:0:0,-9.63296,-98.5571	0/0:117:110,7:110:3861:7:252:0,-12.1915,-317.717	0/0:62:62,0:62:2199:0:0:0,-18.6639,-193.751	0/0:116:113,3:113:4020:3:104:0,-25.2167,-344.418	0/1:60:53,7:53:1875:7:252:-4.96716,0,-148.24	0/0:109:99,10:99:3469:10:356:0,-0.431022,-274.56	0/1:54:45,9:45:1581:9:311:-12.0681,0,-123.974	0/1:59:49,9:49:1744:9:324:-11.6863,0,-136.253	0/1:51:42,9:42:1499:9:320:-13.7898,0,-117.554	0/1:74:67,7:67:2379:7:252:-0.752741,0,-187.293	0/1:70:59,11:59:2120:11:396:-14.9107,0,-165.571	0/1:44:38,6:38:1352:6:216:-6.54519,0,-106.721	0/1:19:16,3:16:572:3:108:-4.3556,0,-45.2255	0/0:111:108,3:108:3840:3:108:0,-23.3392,-327.461	0/0:72:68,4:68:2407:4:144:0,-8.36054,-199.184	0/1:12:7,5:7:244:5:180:-12.9397,0,-17.8252	0/0:44:43,1:43:1506:1:36:0,-9.64704,-128.511	0/1:31:28,3:28:1008:3:108:-0.74324,0,-78.8398	0/0:35:35,0:35:1252:0:0:0,-10.536,-110.772	0/0:117:109,8:109:3871:8:288:0,-8.9531,-314.43	0/0:243:238,5:238:8411:5:176:0,-56.9653,-727.505	0/1:51:44,7:44:1568:7:252:-7.67643,0,-122.359	0/0:174:160,14:160:5638:14:504:0,-6.68204,-451.244	0/0:113:111,2:111:3977:2:72:0,-27.1797,-344.042	0/0:95:90,5:90:3193:5:180:0,-12.0458,-264.018	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.0429	0/0:12:12,0:12:424:0:0:0,-3.61236,-37.9413	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.53612	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.6959	0/0:10:10,0:10:345:0:0:0,-3.0103,-30.8699	0/1:118:98,20:98:3488:20:720:-29.6072,0,-269.333	0/1:46:39,7:39:1388:7:252:-9.18158,0,-108.281	0/1:17:15,2:15:536:2:72:-1.71062,0,-42.6449	.:.:.:.:.:.:.:.	0/1:76:68,8:68:2436:8:288:-3.38913,0,-192.916	0/1:35:31,4:31:1095:4:144:-2.77757,0,-86.0858	0/0:75:74,1:74:2643:1:36:0,-18.979,-228.991	0/1:83:67,16:67:2375:16:568:-26.4664,0,-183.836	0/0:70:68,2:68:2398:2:72:0,-14.2354,-204.327	0/0:51:48,3:48:1693:3:108:0,-5.27736,-139.431	0/0:55:54,1:54:1913:1:36:0,-12.9584,-166.005	0/1:45:39,6:39:1375:6:212:-5.87845,0,-107.563	0/0:37:35,2:35:1241:2:72:0,-4.30139,-102.689	0/0:92:89,3:89:3149:3:108:0,-17.6196,-268.23	0/1:30:24,6:24:856:6:216:-10.7596,0,-65.6524	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.90114	0/0:82:75,7:75:2665:7:252:0,-1.6555,-212.55	0/0:64:64,0:64:2292:0:0:0,-19.2659,-202.868	0/0:11:11,0:11:392:0:0:0,-3.31133,-34.3927	0/0:145:144,1:144:5130:1:36:0,-40.0511,-449.089	0/1:21:16,5:16:564:5:180:-10.2304,0,-42.9106	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.53612	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.2363	0/0:74:69,5:69:2418:5:176:0,-6.0912,-194.1	0/1:115:93,22:93:3293:22:784:-36.2655,0,-257.357	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.71863	0/0:288:280,8:280:9954:8:272:0,-61.9117,-848.52	0/0:63:60,3:60:2131:3:108:0,-8.88972,-177.996	0/0:79:77,2:77:2739:2:72:0,-16.9446,-234.317	0/0:54:50,4:50:1792:4:136:0,-3.68008,-145.449	0/0:108:104,4:104:3687:4:144:0,-19.1976,-311.544	0/1:47:42,5:42:1480:5:180:-2.40366,0,-116.733	0/0:48:47,1:47:1650:1:36:0,-10.8512,-141.002	0/0:46:45,1:45:1590:1:36:0,-10.2491,-136.817	0/1:71:55,16:55:1930:16:572:-30.4403,0,-149.072	0/0:39:36,3:36:1266:3:108:0,-1.665,-101.061	0/0:53:50,3:50:1783:3:108:0,-5.87942,-147.343	0/0:53:53,0:53:1888:0:0:0,-15.9546,-167.058	0/0:74:72,2:72:2535:2:72:0,-15.4395,-217.888	0/0:265:259,6:259:9234:6:216:0,-59.9824,-795.163	0/1:14:9,5:9:324:5:180:-12.3376,0,-23.9732	0/0:112:109,3:109:3900:3:108:0,-23.6402,-333.214	0/0:37:37,0:37:1332:0:0:0,-11.1381,-117.528	0/1:47:42,5:42:1504:5:180:-2.40366,0,-117.852	0/0:62:58,4:58:2042:4:144:0,-5.35024,-166.669	0/1:92:79,13:79:2812:13:459:-13.9493,0,-220.765	0/1:46:33,13:33:1176:13:468:-28.6123,0,-90.6139	0/1:46:40,6:40:1406:6:212:-5.57742,0,-110.839	0/1:77:66,11:66:2356:11:396:-12.8034,0,-184.253	0/1:75:64,11:64:2234:11:396:-13.4055,0,-175.032	0/1:7:5,2:5:165:2:72:-4.72951,0,-12.8357	0/1:80:70,10:70:2458:10:360:-8.6619,0,-193.28	0/0:71:65,6:65:2320:6:216:0,-1.58262,-185.473	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.0913	0/1:64:56,8:56:1987:8:288:-7.00149,0,-156.993	0/1:32:29,3:29:1035:3:108:-0.44221,0,-81.6303	0/0:190:190,0:190:6714:0:0:0,-57.1957,-593.095	0/0:95:88,7:88:3121:7:243:0,-6.39037,-253.001
chr01	31004350	.	C	T	9296.15	PASS	AB=0.546158;ABP=38.8928;AC=36;AF=0.195652;AN=184;AO=1062;CIGAR=1X;DP=3978;DPB=3978;DPRA=1.4176;EPP=2283.13;EPPR=6162.38;GTI=4;LEN=1;MEANALT=1.05128;MQM=27.3804;MQMR=42.2359;NS=92;NUMALT=1;ODDS=0.226981;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37773;QR=103805;RO=2912;RPL=1059;RPP=2283.13;RPPR=6162.38;RPR=3;RUN=1;SAF=0;SAP=2309.11;SAR=1062;SRF=0;SRP=6326.34;SRR=2912;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1036:0:0:0,-8.72987,-90.8889	0/1:55:25,30:25:900:30:1064:-56.3922,0,-62.9249	0/0:66:66,0:66:2356:0:0:0,-19.868,-207.877	0/0:56:56,0:56:2001:0:0:0,-16.8577,-175.68	0/1:32:17,15:17:608:15:536:-25.9971,0,-44.2261	0/1:11:4,7:4:144:7:244:-13.5247,0,-9.7164	0/1:30:15,15:15:527:15:540:-26.9617,0,-36.9886	0/0:41:41,0:41:1456:0:0:0,-12.3422,-124.375	0/0:41:41,0:41:1468:0:0:0,-12.3422,-129.718	0/0:24:24,0:24:852:0:0:0,-7.22472,-72.1257	0/0:26:26,0:26:928:0:0:0,-7.82678,-81.3232	0/0:50:50,0:50:1781:0:0:0,-15.0515,-154.836	0/1:28:14,14:14:492:14:499:-25.0563,0,-34.2832	0/1:21:6,15:6:216:15:536:-29.6379,0,-13.0439	0/1:45:22,23:22:774:23:815:-42.0598,0,-53.9435	0/0:29:29,0:29:1026:0:0:0,-8.72987,-89.1712	0/0:11:10,0:10:356:0:0:0,-3.0103,-31.4464	0/0:13:12,1:12:428:1:36:0,-1.26479,-35.4087	0/1:13:5,8:5:171:8:284:-15.1955,0,-10.7174	0/1:77:39,38:39:1391:38:1353:-66.705,0,-99.6704	0/1:64:20,44:20:712:44:1565:-87.789,0,-43.8268	0/1:82:22,60:22:792:60:2156:-118.135,0,-44.4667	0/0:59:59,0:59:2089:0:0:0,-17.7608,-182.3	0/0:35:35,0:35:1252:0:0:0,-10.536,-110.624	0/0:29:28,1:28:1000:1:36:0,-6.08127,-85.7854	0/1:91:41,50:41:1463:50:1756:-91.0398,0,-97.8817	0/0:95:95,0:95:3379:0:0:0,-28.5978,-295.623	0/0:15:15,0:15:540:0:0:0,-4.51545,-47.8857	0/1:127:56,71:56:1987:71:2524:-131.32,0,-135.609	0/0:76:76,0:76:2707:0:0:0,-22.8783,-234.43	0/0:36:36,0:36:1292:0:0:0,-10.8371,-113.202	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.52101	0/0:6:6,0:6:212:0:0:0,-1.80618,-18.9186	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.0277	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.5797	0/0:11:11,0:11:396:0:0:0,-3.31133,-34.442	0/1:111:45,66:45:1607:66:2358:-123.332,0,-105.867	0/1:76:46,30:46:1652:30:1057:-47.5966,0,-120.354	0/1:14:6,8:6:212:8:284:-15.0586,0,-14.8325	.:.:.:.:.:.:.:.	0/1:56:34,21:34:1211:21:748:-34.0451,0,-88.6782	0/0:14:14,0:14:489:0:0:0,-4.21442,-43.4253	0/0:75:75,0:75:2684:0:0:0,-22.5772,-235.46	0/0:10:10,0:10:356:0:0:0,-3.0103,-31.7189	0/0:16:16,0:16:572:0:0:0,-4.81648,-49.1524	0/0:53:53,0:53:1878:0:0:0,-15.9546,-164.926	0/0:48:48,0:48:1716:0:0:0,-14.4494,-150.473	0/1:68:36,32:36:1284:32:1148:-55.8492,0,-92.9807	0/1:57:24,33:24:852:33:1161:-61.8078,0,-58.3205	0/1:28:10,18:10:356:18:644:-34.5175,0,-23.29	0/1:45:15,30:15:531:30:1072:-58.3296,0,-33.3224	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.8708	0/0:190:190,0:190:6752:0:0:0,-57.1957,-588.023	0/0:29:29,0:29:1019:0:0:0,-8.72987,-90.1859	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.52101	0/0:50:50,0:50:1791:0:0:0,-15.0515,-156.76	0/0:15:15,0:15:540:0:0:0,-4.51545,-47.8857	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.0409	.:.:.:.:.:.:.:.	0/0:56:56,0:56:1991:0:0:0,-16.8577,-173.17	0/0:89:89,0:89:3161:0:0:0,-26.7917,-272.186	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.0277	0/0:73:73,0:73:2611:0:0:0,-21.9752,-225.884	0/1:81:29,52:29:1040:52:1852:-99.7894,0,-65.9707	0/0:26:26,0:26:928:0:0:0,-7.82678,-81.3149	0/0:33:33,0:33:1180:0:0:0,-9.93399,-102.749	0/0:50:49,1:49:1738:1:36:0,-12.4029,-149.527	0/1:75:19,56:19:680:56:1987:-110.191,0,-36.2356	0/0:20:20,0:20:711:0:0:0,-6.0206,-62.1824	0/0:23:23,0:23:820:0:0:0,-6.92369,-70.7292	0/0:38:38,0:38:1347:0:0:0,-11.4391,-118.255	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.4177	0/1:89:44,45:44:1559:45:1593:-79.57,0,-108.874	0/1:31:16,15:16:576:15:536:-27.5635,0,-41.7227	0/0:55:54,0:54:1924:0:0:0,-16.2556,-167.444	0/0:57:57,0:57:2044:0:0:0,-17.1587,-178.768	0/1:63:26,37:26:932:37:1308:-69.9888,0,-61.1204	0/0:30:30,0:30:1072:0:0:0,-9.0309,-93.2306	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.5496	0/1:49:24,25:24:856:25:892:-45.6797,0,-60.2398	0/1:50:26,23:26:932:23:812:-39.7493,0,-64.6803	0/1:66:36,30:36:1283:30:1060:-51.6032,0,-90.8235	0/1:98:41,57:41:1468:57:2040:-104.718,0,-100.104	0/1:26:12,14:12:424:14:489:-25.2939,0,-29.1301	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.0294	0/1:58:31,27:31:1108:27:964:-46.7983,0,-79.7007	0/1:9:5,4:5:180:4:144:-7.09055,0,-13.5152	0/0:38:38,0:38:1364:0:0:0,-11.4391,-119.716	0/0:34:34,0:34:1212:0:0:0,-10.235,-104.615	0/1:17:12,5:12:423:5:180:-7.06605,0,-32.506	0/1:76:47,29:47:1680:29:1036:-47.7023,0,-120.835	0/1:20:8,12:8:288:12:428:-22.3727,0,-19.646	0/0:74:74,0:74:2639:0:0:0,-22.2762,-231.176	0/0:35:35,0:35:1256:0:0:0,-10.536,-110.17
chr01	31004376	.	TTGCT	GTGCT,ATGCT	71419.6	PASS	AB=0.450782,0.539626;ABP=44.6914,30.0293;AC=148,36;AF=0.804348,0.195652;AN=184;AO=2924,1072;CIGAR=1X4M,1X4M;DP=4041;DPB=4043.6;DPRA=0,1.43148;EPP=6352.4,2330.83;EPPR=11.6962;GTI=6;LEN=1,1;MEANALT=1.72826,2.33333;MQM=42.2609,27.4123;MQMR=46;NS=92;NUMALT=2;ODDS=0.0636793;PAIRED=0,0;PAIREDR=0;PAO=3,4;PQA=108,144;PQR=0;PRO=3;QA=103588,28941;QR=144;RO=4;RPL=2924,1072;RPP=6352.4,2330.83;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=6352.4,2330.83;SAR=2924,1072;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,30,0:0:0:30,0:1063,0:-93.4968,-9.0309,0,-93.4968,-9.0309,-93.4968	1/2:58:0,27,31:0:0:27,31:968,840:-135.735,-58.6637,-50.5359,-77.3715,0,-68.0395	1/1:66:0,65,0:0:0:65,0:2327,0:-204.738,-19.567,0,-204.738,-19.567,-204.738	1/1:58:0,58,0:0:0:58,0:2075,0:-182.758,-17.4597,0,-182.758,-17.4597,-182.758	1/2:32:0,17,15:0:0:17,15:608,401:-76.2058,-27.7542,-22.6367,-48.7416,0,-44.2261	1/2:10:0,4,6:0:0:4,6:144,161:-22.816,-11.299,-10.0949,-11.8236,0,-10.0174	1/2:30:0,15,14:0:0:15,14:531,374:-67.6098,-25.5512,-21.0357,-42.0017,0,-37.7873	1/1:40:1,38,0:1:36:38,0:1341,0:-114.235,-8.53129,0,-114.537,-11.4391,-117.439	1/1:43:0,43,0:0:0:43,0:1544,0:-136.289,-12.9443,0,-136.289,-12.9443,-136.289	1/1:25:0,25,0:0:0:25,0:862,0:-75.3385,-7.52575,0,-75.3385,-7.52575,-75.3385	1/1:26:0,25,0:0:0:25,0:887,0:-77.9154,-7.52575,0,-77.9154,-7.52575,-77.9154	1/1:51:0,50,0:0:0:50,0:1765,0:-154.813,-15.0515,0,-154.813,-15.0515,-154.813	1/2:30:0,15,15:0:0:15,15:528,404:-69.8167,-28.0259,-23.5104,-42.0817,0,-37.5663	1/2:21:0,6,15:0:0:6,15:216,405:-45.3557,-28.1164,-26.3103,-17.5594,0,-13.0439	1/2:46:0,21,23:0:0:21,23:734,635:-102.379,-44.4882,-38.1665,-57.8807,0,-50.957	1/1:30:0,30,0:0:0:30,0:1054,0:-92.7531,-9.0309,0,-92.7531,-9.0309,-92.7531	1/1:12:0,12,0:0:0:12,0:423,0:-37.3602,-3.61236,0,-37.3602,-3.61236,-37.3602	1/1:13:0,12,1:0:0:12,1:432,27:-38.1304,-3.61236,0,-36.2806,-1.51399,-35.9796	1/2:13:0,4,8:0:0:4,8:125,214:-24.3956,-14.5857,-13.3816,-9.75552,0,-7.34728	1/2:78:0,38,38:0:0:38,38:1356,1008:-177.27,-69.2168,-57.7776,-108,0,-96.5613	1/2:70:0,22,47:0:0:22,47:792,1286:-153.026,-89.8645,-83.2418,-63.2091,0,-49.0607	1/2:83:0,22,61:0:0:22,61:782,1642:-175.13,-113.154,-106.531,-62.294,0,-43.9312	1/1:61:0,57,0:0:0:57,0:2021,0:-177.333,-17.1587,0,-177.333,-17.1587,-177.333	1/1:37:0,37,0:0:0:37,0:1332,0:-117.602,-11.1381,0,-117.602,-11.1381,-117.602	1/1:29:0,28,1:0:0:28,1:993,27:-87.5349,-8.42884,0,-85.6802,-6.33047,-85.3791	1/2:90:0,42,47:0:0:42,47:1480,1266:-204.386,-87.3244,-74.6811,-117.099,0,-102.951	1/1:94:1,92,0:1:36:92,0:3293,0:-286.3,-24.7274,0,-286.601,-27.6948,-289.502	1/1:15:0,15,0:0:0:15,0:540,0:-47.8857,-4.51545,0,-47.8857,-4.51545,-47.8857	1/2:136:0,60,76:0:0:60,76:2111,2054:-308.582,-141.872,-123.81,-166.949,0,-144.071	1/1:80:0,78,0:0:0:78,0:2734,0:-239.048,-23.4803,0,-239.048,-23.4803,-239.048	1/1:38:0,38,0:0:0:38,0:1359,0:-119.635,-11.4391,0,-119.635,-11.4391,-119.635	1/1:1:0,1,0:0:0:1,0:36,0:-3.52101,-0.30103,0,-3.52101,-0.30103,-3.52101	1/1:6:0,6,0:0:0:6,0:216,0:-19.2433,-1.80618,0,-19.2433,-1.80618,-19.2433	1/1:4:0,4,0:0:0:4,0:144,0:-13.0277,-1.20412,0,-13.0277,-1.20412,-13.0277	1/1:5:0,5,0:0:0:5,0:171,0:-15.1648,-1.50515,0,-15.1648,-1.50515,-15.1648	1/1:10:0,10,0:0:0:10,0:360,0:-32.0662,-3.0103,0,-32.0662,-3.0103,-32.0662	1/2:111:0,45,65:0:0:45,65:1578,1749:-244.648,-120.149,-106.603,-124.449,0,-104.882	1/2:76:0,41,30:0:0:41,30:1448,803:-169.404,-55.0271,-42.6849,-114.322,0,-105.291	1/2:14:0,6,8:0:0:6,8:212,216:-32.0474,-15.1074,-13.3012,-17.2408,0,-14.8325	.:.:.:.:.:.:.:.	1/2:56:0,36,20:0:0:36,20:1244,547:-136.78,-38.3128,-27.4757,-98.7454,0,-92.7248	1/1:14:0,14,0:0:0:14,0:500,0:-44.3955,-4.21442,0,-44.3955,-4.21442,-44.3955	1/1:76:0,75,0:0:0:75,0:2666,0:-234.353,-22.5773,0,-234.353,-22.5773,-234.353	1/1:10:0,10,0:0:0:10,0:360,0:-32.0412,-3.0103,0,-32.0412,-3.0103,-32.0412	1/1:17:0,17,0:0:0:17,0:594,0:-52.1914,-5.11751,0,-52.1914,-5.11751,-52.1914	1/1:53:0,53,0:0:0:53,0:1891,0:-166.394,-15.9546,0,-166.394,-15.9546,-166.394	1/1:47:0,47,0:0:0:47,0:1671,0:-147.08,-14.1484,0,-147.08,-14.1484,-147.08	1/2:72:0,38,34:0:0:38,34:1360,914:-171.444,-63.0659,-51.6268,-108.669,0,-98.4343	1/2:57:0,25,32:0:0:25,32:881,868:-130.244,-60.0689,-52.5432,-70.1994,0,-60.5665	1/2:29:0,11,18:0:0:11,18:385,484:-63.9067,-33.5109,-30.1995,-30.6975,0,-25.279	1/2:46:0,15,31:0:0:15,31:531,838:-100.255,-58.2126,-53.6971,-42.3533,0,-33.0214	1/1:5:0,5,0:0:0:5,0:180,0:-16.1966,-1.50515,0,-16.1966,-1.50515,-16.1966	1/1:181:1,180,0:1:36:180,0:6381,0:-556.53,-50.9278,0,-556.831,-54.1854,-559.733	1/1:29:0,29,0:0:0:29,0:1040,0:-91.8974,-8.72987,0,-91.8974,-8.72987,-91.8974	1/1:1:0,1,0:0:0:1,0:36,0:-3.52101,-0.30103,0,-3.52101,-0.30103,-3.52101	1/1:50:0,50,0:0:0:50,0:1759,0:-154.81,-15.0515,0,-154.81,-15.0515,-154.81	1/1:15:0,15,0:0:0:15,0:540,0:-47.8857,-4.51545,0,-47.8857,-4.51545,-47.8857	1/1:6:0,6,0:0:0:6,0:216,0:-19.3655,-1.80618,0,-19.3655,-1.80618,-19.3655	.:.:.:.:.:.:.:.	1/1:57:0,56,0:0:0:56,0:1976,0:-172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chr01	31013889	.	TATGG	CATGA,TAGGG	89666.1	PASS	AB=0.490778,0.506523;ABP=4.65234,3.83181;AC=148,40;AF=0.787234,0.212766;AN=188;AO=3397,1131;CIGAR=1X3M1X,2M1X2M;DP=4549;DPB=4549;DPRA=24.4462,1.33407;EPP=5213.41,2347.33;EPPR=0;GTI=6;LEN=5,1;MEANALT=1.62366,2.1;MQM=48.7442,25.1627;MQMR=0;NS=94;NUMALT=2;ODDS=0.564724;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=120119,28139;QR=0;RO=0;RPL=3126,1118;RPP=5213.41,2347.33;RPPR=0;RPR=271,13;RUN=1,1;SAF=0,0;SAP=7379.5,2458.95;SAR=3397,1131;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23,0:0:0:23,0:814,0:-73.0409,-6.92369,0,-73.0409,-6.92369,-73.0409	1/2:46:0,24,22:0:0:24,22:850,561:-105.102,-38.4156,-31.1909,-66.9683,0,-60.3456	1/1:84:0,84,0:0:0:84,0:2971,0:-264.48,-25.2865,0,-264.48,-25.2865,-264.48	1/1:90:0,88,0:0:0:88,0:3124,0:-277.615,-26.4906,0,-277.615,-26.4906,-277.615	1/2:24:0,13,11:0:0:13,11:455,275:-55.3549,-18.6852,-14.7719,-36.9475,0,-33.6361	1/2:33:0,14,19:0:0:14,19:493,471:-71.7217,-31.7534,-27.539,-40.2624,0,-34.5428	1/2:55:0,33,22:0:0:33,22:1166,533:-129.385,-35.6157,-25.6817,-94.0359,0,-87.4133	1/1:65:0,65,0:0:0:65,0:2286,0:-203.043,-19.567,0,-203.043,-19.567,-203.043	1/1:68:0,68,0:0:0:68,0:2405,0:-213.919,-20.47,0,-213.919,-20.47,-213.919	1/1:57:0,57,0:0:0:57,0:1995,0:-177.013,-17.1587,0,-177.013,-17.1587,-177.013	1/1:38:0,38,0:0:0:38,0:1342,0:-118.527,-11.4391,0,-118.527,-11.4391,-118.527	1/1:52:0,51,0:0:0:51,0:1779,0:-156.986,-15.3525,0,-156.986,-15.3525,-156.986	1/2:39:0,24,15:0:0:24,15:849,382:-95.1721,-26.3062,-19.0815,-69.1406,0,-64.6252	1/2:48:0,31,17:0:0:31,17:1094,431:-117.968,-29.5726,-20.2407,-88.6649,0,-83.5474	1/2:73:0,32,41:0:0:32,41:1146,986:-157.851,-65.532,-55.8991,-92.61,0,-80.2678	1/1:27:0,27,0:0:0:27,0:940,0:-83.8947,-8.12781,0,-83.8947,-8.12781,-83.8947	1/1:16:0,16,0:0:0:16,0:565,0:-50.3187,-4.81648,0,-50.3187,-4.81648,-50.3187	1/2:25:0,10,15:0:0:10,15:359,382:-55.3743,-26.3062,-23.2959,-29.3722,0,-24.8568	1/2:23:0,9,14:0:0:9,14:321,357:-49.4114,-24.6281,-21.9188,-25.0785,0,-20.8641	1/2:63:0,33,29:0:0:33,29:1163,697:-139.882,-46.0242,-36.0902,-93.7808,0,-85.0509	1/2:84:0,51,33:0:0:51,33:1772,834:-196.799,-56.6985,-41.346,-140.369,0,-130.435	1/2:77:0,20,57:0:0:20,57:714,1476:-158.514,-100.496,-94.4756,-58.3408,0,-41.1821	1/1:56:0,55,0:0:0:55,0:1932,0:-172.07,-16.5567,0,-172.07,-16.5567,-172.07	1/1:36:0,33,3:0:0:33,3:1137,75:-100.949,-9.93399,0,-95.9227,-4.67804,-95.0196	1/1:50:0,49,0:0:0:49,0:1719,0:-152.171,-14.7505,0,-152.171,-14.7505,-152.171	1/2:120:0,65,55:0:0:65,55:2311,1420:-284.317,-96.5991,-77.0322,-188.004,0,-171.447	1/1:94:0,94,0:0:0:94,0:3352,0:-296.729,-28.2968,0,-296.729,-28.2968,-296.729	1/1:18:0,18,0:0:0:18,0:639,0:-57.0749,-5.41854,0,-57.0749,-5.41854,-57.0749	1/2:120:0,60,59:0:0:60,59:2109,1522:-274.307,-103.313,-85.2516,-171.1,0,-153.34	1/1:61:0,61,0:0:0:61,0:2153,0:-189.142,-18.3628,0,-189.142,-18.3628,-189.142	1/1:70:0,69,0:0:0:69,0:2409,0:-213.93,-20.7711,0,-213.93,-20.7711,-213.93	1/1:4:0,4,0:0:0:4,0:140,0:-12.8484,-1.20412,0,-12.8484,-1.20412,-12.8484	1/1:12:0,12,0:0:0:12,0:427,0:-38.2446,-3.61236,0,-38.2446,-3.61236,-38.2446	2/2:2:0,0,2:0:0:0,2:0,50:-4.17935,-4.17935,-4.17935,-0.60206,-0.60206,0	1/1:5:0,5,0:0:0:5,0:180,0:-16.483,-1.50515,0,-16.483,-1.50515,-16.483	1/1:6:0,6,0:0:0:6,0:216,0:-19.4948,-1.80618,0,-19.4948,-1.80618,-19.4948	1/2:129:0,68,61:0:0:68,61:2440,1567:-302.669,-106.401,-85.9306,-196.556,0,-178.193	1/2:65:0,29,36:0:0:29,36:1027,896:-143.05,-60.4313,-51.7014,-82.9101,0,-72.073	1/2:38:0,19,17:0:0:19,17:680,425:-83.4607,-28.431,-22.7114,-54.9831,0,-49.8656	1/1:3:0,3,0:0:0:3,0:103,0:-9.51269,-0.90309,0,-9.51269,-0.90309,-9.51269	1/2:59:0,31,28:0:0:31,28:1110,699:-136.426,-47.1323,-37.8004,-89.5764,0,-81.1476	1/1:20:0,20,0:0:0:20,0:708,0:-63.3006,-6.0206,0,-63.3006,-6.0206,-63.3006	1/1:53:0,53,0:0:0:53,0:1842,0:-163.263,-15.9546,0,-163.263,-15.9546,-163.263	1/1:32:0,32,0:0:0:32,0:1146,0:-102.086,-9.63296,0,-102.086,-9.63296,-102.086	1/1:31:0,31,0:0:0:31,0:1073,0:-96.2369,-9.33193,0,-96.2369,-9.33193,-96.2369	1/1:61:0,60,0:0:0:60,0:2085,0:-186.995,-18.0618,0,-186.995,-18.0618,-186.995	1/1:55:0,54,0:0:0:54,0:1918,0:-171.126,-16.2556,0,-171.126,-16.2556,-171.126	1/2:75:0,35,40:0:0:35,40:1233,959:-162.299,-63.6736,-53.1376,-98.9078,0,-86.8666	1/2:64:0,32,32:0:0:32,32:1137,770:-142.495,-51.2326,-41.5996,-91.5432,0,-81.9103	1/2:35:0,25,10:0:0:25,10:880,236:-86.1953,-15.7354,-8.20965,-70.706,0,-67.6957	1/2:62:0,38,24:0:0:38,24:1329,624:-150.668,-42.6748,-31.2356,-108.269,0,-101.045	1/1:2:0,2,0:0:0:2,0:72,0:-6.77694,-0.60206,0,-6.77694,-0.60206,-6.77694	1/1:46:0,46,0:0:0:46,0:1634,0:-146.291,-13.8474,0,-146.291,-13.8474,-146.291	1/1:21:0,21,0:0:0:21,0:747,0:-67.49,-6.32163,0,-67.49,-6.32163,-67.49	1/1:10:0,10,0:0:0:10,0:359,0:-32.1734,-3.0103,0,-32.1734,-3.0103,-32.1734	1/1:57:0,57,0:0:0:57,0:2006,0:-178.166,-17.1587,0,-178.166,-17.1587,-178.166	1/1:28:0,28,0:0:0:28,0:1006,0:-89.4396,-8.42884,0,-89.4396,-8.42884,-89.4396	1/1:6:0,6,0:0:0:6,0:210,0:-18.663,-1.80618,0,-18.663,-1.80618,-18.663	1/2:6:0,2,4:0:0:2,4:63,100:-12.0303,-6.93485,-6.33279,-5.37863,0,-4.17451	1/1:58:0,57,0:0:0:57,0:2013,0:-176.989,-17.1587,0,-176.989,-17.1587,-176.989	1/1:70:0,69,0:0:0:69,0:2455,0:-217.437,-20.7711,0,-217.437,-20.7711,-217.437	1/1:3:0,3,0:0:0:3,0:108,0:-9.98707,-0.90309,0,-9.98707,-0.90309,-9.98707	1/1:66:0,66,0:0:0:66,0:2327,0:-208.256,-19.868,0,-208.256,-19.868,-208.256	1/2:72:0,36,36:0:0:36,36:1258,854:-157.52,-56.5081,-45.671,-101.288,0,-90.4508	1/1:46:0,45,0:0:0:45,0:1609,0:-141.981,-13.5464,0,-141.981,-13.5464,-141.981	1/1:15:0,15,0:0:0:15,0:532,0:-47.6563,-4.51545,0,-47.6563,-4.51545,-47.6563	1/1:39:0,38,0:0:0:38,0:1324,0:-116.485,-11.4391,0,-116.485,-11.4391,-116.485	1/2:100:0,32,68:0:0:32,68:1146,1634:-200.115,-108.43,-98.797,-91.9915,0,-71.5215	1/1:31:0,31,0:0:0:31,0:1086,0:-96.2247,-9.33193,0,-96.2247,-9.33193,-96.2247	1/1:27:0,27,0:0:0:27,0:936,0:-83.6506,-8.12781,0,-83.6506,-8.12781,-83.6506	1/1:40:0,40,0:0:0:40,0:1418,0:-127.732,-12.0412,0,-127.732,-12.0412,-127.732	1/1:8:0,8,0:0:0:8,0:281,0:-25.3481,-2.40824,0,-25.3481,-2.40824,-25.3481	1/2:107:0,55,52:0:0:55,52:1942,1307:-244.297,-88.412,-71.8553,-156.169,0,-140.515	1/2:29:0,12,17:0:0:12,17:432,425:-63.9014,-28.7572,-25.1449,-35.4453,0,-30.3278	1/1:70:0,69,0:0:0:69,0:2411,0:-213.697,-20.7711,0,-213.697,-20.7711,-213.697	1/1:168:0,168,0:0:0:168,0:5992,0:-533.558,-50.573,0,-533.558,-50.573,-533.558	1/2:39:0,14,25:0:0:14,25:494,633:-83.1867,-43.1803,-38.9659,-40.3117,0,-32.786	1/1:43:0,43,0:0:0:43,0:1522,0:-136.284,-12.9443,0,-136.284,-12.9443,-136.284	1/1:22:0,20,0:0:0:20,0:719,0:-64.2691,-6.0206,0,-64.2691,-6.0206,-64.2691	1/2:26:0,20,6:0:0:20,6:717,150:-68.0889,-10.2919,-4.27133,-58.0478,0,-56.2416	1/2:49:0,20,29:0:0:20,29:716,736:-107.841,-50.1647,-44.1441,-57.9774,0,-49.2476	1/2:111:0,56,55:0:0:56,55:2005,1323:-249.57,-87.8653,-71.0076,-161.986,0,-145.429	1/2:47:0,25,21:0:0:25,21:891,496:-103.294,-32.5543,-25.0286,-70.7091,0,-64.3874	1/2:37:0,11,26:0:0:11,26:396,635:-74.5962,-42.6537,-39.3423,-32.2563,0,-24.4295	1/1:23:0,23,0:0:0:23,0:812,0:-71.9964,-6.92369,0,-71.9964,-6.92369,-71.9964	1/2:89:0,45,44:0:0:45,44:1609,1058:-199.886,-70.2983,-56.752,-129.869,0,-116.624	1/2:18:0,6,12:0:0:6,12:207,303:-37.5702,-20.9095,-19.1034,-16.9632,0,-13.3508	1/1:48:0,48,0:0:0:48,0:1684,0:-150.782,-14.4494,0,-150.782,-14.4494,-150.782	1/1:56:0,56,0:0:0:56,0:1993,0:-177.686,-16.8577,0,-177.686,-16.8577,-177.686	1/2:27:0,15,12:0:0:15,12:523,311:-63.6003,-21.6343,-17.1189,-42.2475,0,-38.6352	1/2:73:0,34,38:0:0:34,38:1216,970:-163.358,-66.0631,-55.8281,-97.2949,0,-85.8558	1/2:36:0,12,24:0:0:12,24:430,576:-72.1024,-38.3417,-34.7293,-34.0611,0,-26.8364	1/1:70:0,70,0:0:0:70,0:2486,0:-220.821,-21.0721,0,-220.821,-21.0721,-220.821	1/1:64:0,64,0:0:0:64,0:2294,0:-201.673,-19.2659,0,-201.673,-19.2659,-201.673
chr01	31017062	.	GAG	GAC,CAC	131729	PASS	AB=0.476611,0.520772;ABP=17.5358,14.4672;AC=144,40;AF=0.782609,0.217391;AN=184;AO=4607,1598;CIGAR=2M1X,1X1M1X;DP=6223;DPB=6224.33;DPRA=0,1.23292;EPP=10007,3473.02;EPPR=7.35324;GTI=2;LEN=1,3;MEANALT=1.61957,2.14286;MQM=59.9976,59.9762;MQMR=60;NS=92;NUMALT=2;ODDS=0.476027;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=70,70;PQR=0;PRO=0;QA=164250,55362;QR=57;RO=2;RPL=0,0;RPP=10007,3473.02;RPPR=7.35324;RPR=4607,1598;RUN=1,1;SAF=0,0;SAP=10007,3473.02;SAR=4607,1598;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32,0:0:0:32,0:1144,0:-103.27,-9.63296,0,-103.27,-9.63296,-103.27	1/2:59:0,27,32:0:0:27,32:957,1119:-169.347,-91.3833,-83.2555,-78.3161,0,-68.6831	1/1:92:0,92,0:0:0:92,0:3243,0:-292.089,-27.6948,0,-292.089,-27.6948,-292.089	1/1:156:0,155,0:0:0:155,0:5539,0:-498.355,-46.6597,0,-498.355,-46.6597,-498.355	1/2:13:0,4,9:0:0:4,9:144,306:-36.9158,-25.1599,-23.9558,-12.1095,0,-9.40023	1/2:30:0,6,24:0:0:6,24:216,829:-85.326,-67.6985,-65.8924,-17.9843,0,-10.7596	1/2:84:0,33,51:0:0:33,51:1180,1756:-239.189,-142.967,-133.033,-96.5741,0,-81.2215	1/1:106:0,104,0:0:0:104,0:3724,0:-335.099,-31.3071,0,-335.099,-31.3071,-335.099	1/1:45:0,45,0:0:0:45,0:1601,0:-144.378,-13.5464,0,-144.378,-13.5464,-144.378	1/1:76:0,75,0:0:0:75,0:2662,0:-239.463,-22.5773,0,-239.463,-22.5773,-239.463	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:97:0,96,0:0:0:96,0:3423,0:-307.973,-28.8989,0,-307.973,-28.8989,-307.973	1/2:68:0,33,35:0:0:33,35:1155,1212:-192.82,-98.8463,-88.9123,-94.3216,0,-83.7855	1/2:57:0,24,33:0:0:24,33:847,1168:-164.465,-95.4937,-88.269,-69.324,0,-59.39	1/2:71:0,38,33:0:0:38,33:1328,1150:-201.898,-93.8691,-82.43,-108.378,0,-98.4441	1/1:52:0,52,0:0:0:52,0:1817,0:-163.809,-15.6536,0,-163.809,-15.6536,-163.809	1/1:16:0,16,0:0:0:16,0:567,0:-51.3607,-4.81648,0,-51.3607,-4.81648,-51.3607	1/2:35:0,14,21:0:0:14,21:496,731:-100.197,-59.789,-55.5746,-40.7598,0,-34.4382	1/2:11:0,7,4:0:0:7,4:252,144:-32.6714,-12.1095,-10.0023,-20.9217,0,-19.7176	1/2:97:0,48,49:0:0:48,49:1716,1684:-277.015,-137.089,-122.64,-140.276,0,-125.526	1/2:159:0,78,80:0:0:78,80:2777,2783:-452.688,-226.348,-202.868,-226.411,0,-202.328	1/2:56:0,17,39:0:0:17,39:608,1365:-160.985,-111.406,-106.288,-49.9345,0,-38.1943	1/1:97:0,97,0:0:0:97,0:3476,0:-313.051,-29.1999,0,-313.051,-29.1999,-313.051	1/1:45:0,42,3:0:0:42,3:1512,108:-136.015,-12.6433,0,-127.203,-3.47118,-126.299	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/2:248:0,112,134:0:0:112,134:4001,4631:-702.471,-376.26,-342.544,-326.203,0,-285.865	1/1:113:0,113,0:0:0:113,0:4025,0:-362.439,-34.0164,0,-362.439,-34.0164,-362.439	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:235:0,124,111:0:0:124,111:4440,3839:-674.388,-312.296,-274.968,-362.443,0,-329.029	1/1:151:0,150,0:0:0:150,0:5349,0:-481.294,-45.1545,0,-481.294,-45.1545,-481.294	1/1:101:0,101,0:0:0:101,0:3579,0:-322.318,-30.404,0,-322.318,-30.404,-322.318	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	.:.:.:.:.:.:.:.	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:172:0,79,93:0:0:79,93:2807,3217:-490.499,-261.761,-237.98,-229.089,0,-201.093	1/2:113:0,63,50:0:0:63,50:2260,1741:-326.266,-141.921,-122.956,-184.698,0,-169.646	1/2:22:0,10,12:0:0:10,12:360,411:-63.0881,-33.706,-30.6957,-29.734,0,-26.1216	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/2:98:0,48,48:0:0:48,48:1704,1663:-273.987,-135.144,-120.695,-138.834,0,-124.385	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:100:0,100,0:0:0:100,0:3583,0:-322.673,-30.103,0,-322.673,-30.103,-322.673	1/1:49:0,49,0:0:0:49,0:1752,0:-157.964,-14.7505,0,-157.964,-14.7505,-157.964	1/1:55:0,55,0:0:0:55,0:1964,0:-177.035,-16.5567,0,-177.035,-16.5567,-177.035	1/1:62:0,62,0:0:0:62,0:2216,0:-199.705,-18.6639,0,-199.705,-18.6639,-199.705	1/1:47:0,47,0:0:0:47,0:1676,0:-151.127,-14.1484,0,-151.127,-14.1484,-151.127	1/2:125:0,58,66:0:0:58,66:2072,2248:-351.233,-182.292,-164.832,-168.872,0,-149.004	1/2:50:0,27,23:0:0:27,23:966,766:-141.109,-62.3241,-54.1963,-79.1294,0,-72.2057	1/2:66:0,33,33:0:0:33,33:1188,1145:-190.361,-93.4198,-83.4858,-97.2946,0,-87.3606	1/2:73:0,34,39:0:0:34,39:1220,1384:-212.633,-113.119,-102.884,-99.8709,0,-88.1307	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:48:0,48,0:0:0:48,0:1695,0:-152.835,-14.4494,0,-152.835,-14.4494,-152.835	1/1:53:0,53,0:0:0:53,0:1877,0:-169.207,-15.9546,0,-169.207,-15.9546,-169.207	1/1:4:0,4,0:0:0:4,0:129,0:-11.9277,-1.20412,0,-11.9277,-1.20412,-11.9277	1/1:74:0,74,0:0:0:74,0:2623,0:-236.317,-22.2762,0,-236.317,-22.2762,-236.317	1/1:36:0,36,0:0:0:36,0:1277,0:-115.231,-10.8371,0,-115.231,-10.8371,-115.231	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:4:0,3,1:0:0:3,1:104,36:-11.7405,-3.29724,-2.39415,-8.79971,0,-8.49868	1/1:47:0,47,0:0:0:47,0:1672,0:-150.767,-14.1484,0,-150.767,-14.1484,-150.767	1/1:86:0,85,0:0:0:85,0:3044,0:-273.988,-25.5876,0,-273.988,-25.5876,-273.988	.:.:.:.:.:.:.:.	1/1:212:0,211,0:0:0:211,0:7552,0:-679.467,-63.5173,0,-679.467,-63.5173,-679.467	1/2:146:0,65,81:0:0:65,81:2332,2802:-418.097,-227.877,-208.311,-190.573,0,-166.189	1/1:61:0,61,0:0:0:61,0:2184,0:-196.826,-18.3628,0,-196.826,-18.3628,-196.826	1/1:63:0,63,0:0:0:63,0:2256,0:-203.303,-18.9649,0,-203.303,-18.9649,-203.303	1/1:97:0,97,0:0:0:97,0:3463,0:-311.823,-29.1999,0,-311.823,-29.1999,-311.823	1/2:93:0,28,65:0:0:28,65:1000,2207:-260.857,-179.322,-170.893,-81.8865,0,-62.3196	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:24:1,23,0:1:21:23,0:816,0:-71.6618,-5.12477,0,-71.9628,-6.92369,-73.5457	1/1:58:0,57,0:0:0:57,0:2023,0:-182.14,-17.1587,0,-182.14,-17.1587,-182.14	1/2:4:0,3,1:0:0:3,1:108,34:-11.9251,-3.09788,-2.19479,-9.17208,0,-8.87105	1/2:118:0,67,51:0:0:67,51:2384,1803:-341.494,-147.2,-127.031,-194.649,0,-179.297	1/2:70:0,43,27:0:0:43,27:1535,929:-200.941,-75.7913,-62.847,-125.499,0,-117.371	1/1:113:0,113,0:0:0:113,0:4024,0:-362.348,-34.0164,0,-362.348,-34.0164,-362.348	1/1:99:0,99,0:0:0:99,0:3547,0:-319.438,-29.802,0,-319.438,-29.802,-319.438	1/2:16:0,9,7:0:0:9,7:320,247:-46.5452,-20.466,-17.7567,-26.4331,0,-24.3259	1/1:64:0,61,3:0:0:61,3:2184,108:-196.466,-18.3628,0,-187.654,-9.19075,-186.751	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:35:0,16,19:0:0:16,19:572,678:-102.269,-55.6293,-50.8128,-46.9969,0,-41.2774	1/2:82:0,34,48:0:0:34,48:1211,1655:-233.493,-134.784,-124.549,-99.0605,0,-84.6111	1/2:111:0,58,53:0:0:58,53:2071,1826:-317.508,-148.658,-131.198,-169.2,0,-153.246	1/2:45:0,21,24:0:0:21,24:752,837:-129.752,-68.4209,-62.0993,-61.6846,0,-54.4599	1/2:73:0,33,40:0:0:33,40:1182,1390:-209.754,-113.353,-103.419,-96.754,0,-84.7128	1/1:62:0,62,0:0:0:62,0:2203,0:-198.476,-18.6639,0,-198.476,-18.6639,-198.476	1/2:127:0,71,56:0:0:71,56:2540,1934:-364.604,-157.477,-136.104,-207.478,0,-190.62	1/2:25:0,9,16:0:0:9,16:324,562:-72.5332,-46.0933,-43.3841,-26.7966,0,-21.9801	1/1:48:0,48,0:0:0:48,0:1706,0:-153.824,-14.4494,0,-153.824,-14.4494,-153.824	1/1:61:0,61,0:0:0:61,0:2145,0:-193.316,-18.3628,0,-193.316,-18.3628,-193.316	1/2:21:0,10,11:0:0:10,11:360,382:-60.7815,-31.4013,-28.391,-29.734,0,-26.4227	1/2:72:0,47,24:0:0:47,24:1664,833:-203.25,-67.7004,-53.552,-135.539,0,-128.315	1/2:68:1,21,46:1:36:21,46:748,1591:-187.003,-126.333,-122.949,-58.0264,0,-47.1166	1/1:141:0,141,0:0:0:141,0:5037,0:-453.417,-42.4452,0,-453.417,-42.4452,-453.417	1/1:86:0,86,0:0:0:86,0:3052,0:-274.908,-25.8886,0,-274.908,-25.8886,-274.908
chr01	31026040	.	T	C	131245	PASS	AB=0.48673;ABP=9.11913;AC=147;AF=0.781915;AN=188;AO=6159;CIGAR=1X;DP=8219;DPB=8219;DPRA=0;EPP=13083.4;EPPR=4372.52;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9753;MQMR=59.9771;NS=94;NUMALT=1;ODDS=0.18263;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219799;QR=73712;RO=2056;RPL=6125;RPP=13083.4;RPPR=4372.52;RPR=34;RUN=1;SAF=0;SAP=13377.1;SAR=6159;SRF=0;SRP=4467.56;SRR=2056;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:100:53,47:53:1904:47:1667:-120.214,0,-141.535	1/1:193:1,192:1:36:192:6859:-613.782,-54.5005,0	1/1:192:0,192:0:0:192:6870:-618.099,-57.7978,0	0/1:67:43,23:43:1536:23:828:-54.6163,0,-118.305	0/1:75:46,29:46:1644:29:1039:-71.2471,0,-125.671	0/1:101:42,59:42:1504:59:2079:-156.974,0,-105.251	1/1:108:0,108:0:0:108:3838:-345.618,-32.5112,0	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	1/1:108:0,108:0:0:108:3838:-345.617,-32.5112,0	1/1:42:0,42:0:0:42:1474:-132.95,-12.6433,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/1:48:19,29:19:684:29:1040:-79.4649,0,-47.4409	0/1:63:30,33:30:1080:33:1184:-87.9034,0,-78.5438	0/1:56:27,29:27:968:29:1032:-76.3358,0,-70.5797	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0	1/1:78:0,78:0:0:78:2764:-249.001,-23.4803,0	0/1:55:34,20:34:1224:20:705:-47.1577,0,-93.8516	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/1:150:81,69:81:2900:69:2466:-177.04,0,-216.081	0/1:111:50,61:50:1792:61:2175:-162.602,0,-128.148	0/1:61:48,13:48:1720:13:460:-23.3725,0,-135.271	1/1:79:0,79:0:0:79:2816:-253.68,-23.7814,0	0/1:80:12,68:12:424:68:2440:-195.773,0,-14.414	1/1:59:0,59:0:0:59:2078:-187.287,-17.7608,0	0/1:249:116,133:116:4153:133:4726:-350.544,0,-298.995	1/1:214:0,214:0:0:214:7659:-689.344,-64.4204,0	1/1:17:0,17:0:0:17:595:-53.8767,-5.11751,0	0/1:158:72,86:72:2576:86:3083:-230.134,0,-184.527	1/1:138:2,136:2:72:136:4872:-431.795,-34.7054,0	1/1:91:0,91:0:0:91:3242:-292.001,-27.3937,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:151:65,86:65:2332:86:3057:-229.903,0,-164.684	0/1:210:109,101:109:3912:101:3599:-260.9,0,-289.056	0/1:54:34,20:34:1224:20:671:-44.4089,0,-94.2114	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:124:79,45:79:2828:45:1603:-107.232,0,-217.431	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	1/1:142:0,142:0:0:142:5066:-456.085,-42.7463,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:42:0,42:0:0:42:1496:-134.933,-12.6433,0	1/1:87:0,87:0:0:87:3107:-279.857,-26.1896,0	1/1:100:0,100:0:0:100:3560:-320.608,-30.103,0	0/1:146:74,72:74:2664:72:2571:-187.689,0,-196.055	0/1:76:37,39:37:1324:39:1390:-102.519,0,-96.5838	0/1:129:69,60:69:2476:60:2139:-153.944,0,-184.26	0/1:155:83,72:83:2972:72:2576:-185.43,0,-221.053	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:171:0,171:0:0:171:6115:-550.44,-51.4761,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:159:0,159:0:0:159:5635:-507.259,-47.8638,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	1/1:66:0,66:0:0:66:2359:-212.568,-19.868,0	1/1:120:2,118:2:72:118:4210:-372.244,-29.2869,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:191:2,189:2:72:189:6768:-602.356,-50.66,0	0/1:203:97,106:97:3484:106:3796:-280.729,0,-252.661	1/1:55:0,55:0:0:55:1954:-176.134,-16.5567,0	1/1:112:0,112:0:0:112:4000:-360.191,-33.7154,0	1/1:191:1,190:1:36:190:6774:-606.134,-53.8985,0	0/1:159:108,51:108:3854:51:1813:-115.479,0,-299.189	0/1:26:3,23:3:108:23:824:-66.6565,0,-2.24839	1/1:108:0,108:0:0:108:3863:-347.864,-32.5112,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:30:0,30:0:0:30:1059:-95.6196,-9.0309,0	0/1:95:49,46:49:1760:46:1643:-119.56,0,-130.086	0/1:57:38,19:38:1360:19:684:-44.7316,0,-105.542	1/1:121:0,121:0:0:121:4300:-387.179,-36.4246,0	1/1:145:0,144:0:0:144:5160:-464.18,-43.3483,0	0/1:137:75,62:75:2684:62:2224:-159.183,0,-200.564	1/1:109:1,108:1:36:108:3880:-345.795,-29.214,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:97:53,43:53:1893:43:1527:-108.464,0,-141.388	0/1:99:46,53:46:1656:53:1892:-140.756,0,-119.526	0/1:161:87,74:87:3116:74:2649:-190.191,0,-232.201	0/1:80:32,48:32:1148:48:1710:-130.103,0,-79.5474	0/1:59:27,32:27:972:32:1140:-85.1484,0,-70.0371	1/1:76:0,76:0:0:76:2719:-244.953,-22.8783,0	0/1:124:53,71:53:1908:71:2530:-190.623,0,-134.67	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	1/1:73:0,73:0:0:73:2617:-235.778,-21.9752,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:51:34,17:34:1220:17:612:-40.0609,0,-94.7543	0/1:94:46,48:46:1656:48:1708:-125.709,0,-121.032	0/1:49:33,16:33:1188:16:576:-37.4245,0,-92.4781	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:69:0,69:0:0:69:2453:-221.023,-20.7711,0
chr01	31197566	.	A	G	36448.5	PASS	AB=0.507928;ABP=5.00725;AC=40;AF=0.215054;AN=186;AO=1871;CIGAR=1X;DP=7465;DPB=7465;DPRA=1.40116;EPP=4065.84;EPPR=12145.9;GTI=34;LEN=1;MEANALT=1.02174;MQM=59.481;MQMR=13.2248;NS=93;NUMALT=1;ODDS=0.538445;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66676;QR=200684;RO=5592;RPL=1871;RPP=4065.84;RPPR=12145.9;RPR=0;RUN=1;SAF=1871;SAP=4065.84;SAR=0;SRF=5592;SRP=12145.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:46,0:46:1647:0:0:0,-13.8474,-63.3314	0/1:86:37,49:37:1328:49:1752:-131.986,0,-17.3699	0/0:45:45,0:45:1620:0:0:0,-13.5463,-52.6963	0/0:129:129,0:129:4636:0:0:0,-38.8329,-150.635	0/1:59:33,26:33:1188:26:932:-66.4019,0,-20.9178	0/1:36:18,18:18:648:18:635:-46.6399,0,-10.3193	0/1:112:50,61:50:1785:61:2188:-163.349,0,-24.6245	0/0:68:68,0:68:2440:0:0:0,-20.47,-79.3785	0/0:55:55,0:55:1972:0:0:0,-16.5566,-66.3169	0/0:78:78,0:78:2800:0:0:0,-23.4803,-91.1497	0/0:63:62,1:62:2224:1:36:0,-15.4164,-70.8502	0/0:82:82,0:82:2952:0:0:0,-24.6845,-95.8279	0/1:62:33,29:33:1188:29:1032:-74.5111,0,-22.047	0/1:104:64,40:64:2300:40:1436:-98.2305,0,-43.9394	0/1:46:25,21:25:900:21:745:-53.5189,0,-15.486	0/0:57:57,0:57:2044:0:0:0,-17.1587,-66.7084	0/0:53:53,0:53:1908:0:0:0,-15.9546,-62.0414	0/1:63:29,34:29:1044:34:1163:-85.9109,0,-14.9511	0/1:29:15,14:15:540:14:504:-36.9682,0,-10.9626	0/1:197:91,106:91:3268:106:3767:-279.901,0,-48.9709	0/1:102:60,42:60:2152:42:1500:-104.59,0,-39.418	0/1:150:59,91:59:2101:91:3262:-248.527,0,-23.8371	0/0:93:93,0:93:3328:0:0:0,-27.9958,-108.663	0/0:114:111,3:111:3984:3:108:0,-24.2422,-119.531	0/0:80:79,1:79:2844:1:36:0,-20.4841,-90.6638	0/1:226:130,96:130:4672:96:3414:-239.257,0,-83.9501	0/0:147:147,0:147:5280:0:0:0,-44.2514,-181.974	0/0:23:23,0:23:824:0:0:0,-6.92369,-26.9943	0/1:229:108,121:108:3868:121:4320:-320.037,0,-58.3029	0/0:125:125,0:125:4488:0:0:0,-37.6287,-147.988	0/0:114:112,2:112:4024:2:72:0,-27.4807,-130.112	0/0:4:4,0:4:144:0:0:0,-1.20412,-4.80237	0/0:16:16,0:16:572:0:0:0,-4.81648,-18.8173	0/1:3:1,2:1:36:2:72:-5.93363,0,-0.394847	0/0:4:4,0:4:144:0:0:0,-1.20412,-4.80237	0/0:2:2,0:2:72:0:0:0,-0.60206,-2.46608	0/1:168:81,87:81:2908:87:3115:-229.926,0,-46.0197	0/0:162:162,0:162:5801:0:0:0,-48.7669,-193.269	0/1:57:28,29:28:1008:29:1040:-76.7107,0,-15.6791	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:140:61,79:61:2188:79:2822:-212.067,0,-30.4033	0/0:44:44,0:44:1576:0:0:0,-13.2453,-51.3429	0/0:97:97,0:97:3488:0:0:0,-29.1999,-113.168	0/0:44:44,0:44:1580:0:0:0,-13.2453,-53.556	0/0:55:55,0:55:1972:0:0:0,-16.5566,-66.4017	0/0:84:84,0:84:3012:0:0:0,-25.2865,-101.237	0/0:83:83,0:83:2972:0:0:0,-24.9855,-99.9526	0/1:177:74,103:74:2664:103:3673:-277.49,0,-33.2004	0/1:89:52,37:52:1864:37:1324:-92.6528,0,-34.2552	0/1:93:44,49:44:1576:49:1747:-129.464,0,-23.4369	0/1:135:64,71:64:2273:71:2540:-188.164,0,-34.098	0/0:5:5,0:5:180:0:0:0,-1.50515,-5.97051	0/0:94:94,0:94:3380:0:0:0,-28.2968,-109.843	0/0:67:67,0:67:2408:0:0:0,-20.169,-78.3926	0/0:13:13,0:13:464:0:0:0,-3.91339,-15.3128	0/0:117:117,0:117:4208:0:0:0,-35.2205,-136.8	0/0:58:58,0:58:2084:0:0:0,-17.4597,-67.7896	.:.:.:.:.:.:.:.	0/1:11:7,4:7:248:4:144:-10.0023,0,-4.99263	0/0:96:96,0:96:3452:0:0:0,-28.8989,-120.381	0/0:132:131,1:131:4691:1:36:0,-36.1377,-149.265	0/0:4:4,0:4:144:0:0:0,-1.20412,-4.80237	0/0:152:152,0:152:5472:0:0:0,-45.7566,-177.598	0/1:124:69,55:69:2472:55:1964:-139.663,0,-43.2161	0/0:54:54,0:54:1936:0:0:0,-16.2556,-65.0591	0/0:52:52,0:52:1868:0:0:0,-15.6536,-60.8705	0/0:120:118,2:118:4240:2:72:0,-29.2869,-135.094	0/1:39:13,26:13:468:26:928:-72.09,0,-3.57549	0/0:35:33,2:33:1188:2:72:0,-3.69933,-31.8418	0/0:37:37,0:37:1328:0:0:0,-11.1381,-43.3483	0/0:79:79,0:79:2828:0:0:0,-23.7814,-96.374	0/0:10:10,0:10:352:0:0:0,-3.0103,-11.8056	0/1:115:59,56:59:2120:56:1963:-142,0,-34.2495	0/1:44:31,13:31:1104:13:464:-28.8522,0,-25.032	0/0:138:138,0:138:4940:0:0:0,-41.5421,-160.955	0/0:121:121,0:121:4329:0:0:0,-36.4246,-141.413	0/1:95:46,49:46:1648:49:1752:-129.366,0,-25.261	0/0:75:75,0:75:2688:0:0:0,-22.5772,-87.6431	0/0:6:6,0:6:216:0:0:0,-1.80618,-7.13866	0/1:87:42,45:42:1508:45:1587:-116.93,0,-22.9994	0/1:71:32,39:32:1152:39:1400:-104.926,0,-15.8675	0/1:195:100,95:100:3596:95:3373:-244.386,0,-58.3299	0/1:96:42,54:42:1512:54:1918:-143.237,0,-22.234	0/1:73:39,34:39:1396:34:1218:-87.8777,0,-23.7066	0/0:59:59,0:59:2120:0:0:0,-17.7608,-68.9577	0/1:96:55,41:55:1972:41:1461:-102.884,0,-35.4732	0/1:37:17,20:17:612:20:712:-53.1785,0,-8.85013	0/0:71:70,0:70:2520:0:0:0,-21.0721,-81.3687	0/0:77:77,0:77:2768:0:0:0,-23.1793,-92.0128	0/1:61:30,31:30:1080:31:1103:-81.1535,0,-16.8113	0/1:105:46,59:46:1652:59:2092:-156.76,0,-24.1941	0/1:46:14,32:14:504:32:1146:-89.5277,0,-2.54611	0/0:95:95,0:95:3416:0:0:0,-28.5978,-112.278	0/0:72:72,0:72:2573:0:0:0,-21.6742,-84.1803
chr01	31197576	.	T	G	8924.53	PASS	AB=0.48484;ABP=10.3183;AC=146;AF=0.784946;AN=186;AO=5538;CIGAR=1X;DP=7438;DPB=7438;DPRA=80.837;EPP=12028.6;EPPR=4128.81;GTI=35;LEN=1;MEANALT=1;MQM=13.2402;MQMR=59.3405;NS=93;NUMALT=1;ODDS=0.670963;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197859;QR=68066;RO=1900;RPL=5538;RPP=12028.6;RPPR=4128.81;RPR=0;RUN=1;SAF=5538;SAP=12028.6;SAR=0;SRF=1900;SRP=4128.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1644:-63.3357,-13.8474,0	0/1:86:48,38:48:1699:38:1364:-18.538,0,-127.256	1/1:45:0,45:0:0:45:1616:-52.6935,-13.5464,0	1/1:130:0,130:0:0:130:4664:-151.888,-39.1339,0	0/1:61:27,34:27:972:34:1220:-21.481,0,-69.3725	0/1:37:19,18:19:680:18:648:-10.0183,0,-50.3911	0/1:112:63,49:63:2256:49:1764:-23.5637,0,-169.525	1/1:68:0,68:0:0:68:2444:-79.471,-20.47,0	1/1:56:0,56:0:0:56:1999:-67.4723,-16.8577,0	1/1:76:0,76:0:0:76:2728:-88.8134,-22.8783,0	1/1:63:0,63:0:0:63:2268:-77.6015,-18.9649,0	1/1:82:0,82:0:0:82:2927:-95.804,-24.6845,0	0/1:63:29,34:29:1031:34:1216:-22.9083,0,-74.0928	0/1:99:42,57:42:1512:57:2036:-36.9008,0,-102.78	0/1:46:22,24:22:784:24:847:-14.2995,0,-56.9882	1/1:55:0,55:0:0:55:1972:-64.3721,-16.5567,0	1/1:51:0,51:0:0:51:1801:-59.6381,-15.3525,0	0/1:63:34,29:34:1197:29:1040:-14.9483,0,-88.7048	0/1:28:13,15:13:460:15:540:-11.2636,0,-33.3065	0/1:198:108,90:108:3842:90:3220:-49.6111,0,-286.346	0/1:103:42,61:42:1504:61:2178:-40.1888,0,-104.604	0/1:153:93,60:93:3340:60:2144:-24.1496,0,-254.624	1/1:90:0,90:0:0:90:3224:-105.252,-27.0927,0	1/1:113:3,110:3:108:110:3898:-118.23,-23.9412,0	1/1:80:1,79:1:36:79:2828:-90.3228,-20.4841,0	0/1:228:101,127:101:3619:127:4545:-79.7878,0,-256.97	1/1:146:0,146:0:0:146:5192:-179.584,-43.9504,0	1/1:23:0,23:0:0:23:824:-26.9943,-6.92369,0	0/1:232:126,106:126:4532:106:3802:-55.0676,0,-338.188	1/1:124:0,124:0:0:124:4415:-145.487,-37.3277,0	1/1:115:2,113:2:72:113:4048:-131.362,-27.7817,0	1/1:4:0,4:0:0:4:144:-4.80237,-1.20412,0	1/1:16:0,16:0:0:16:572:-18.8173,-4.81648,0	0/1:3:2,1:2:72:1:36:-0.394847,0,-5.93363	1/1:4:0,4:0:0:4:144:-4.80237,-1.20412,0	1/1:2:0,2:0:0:2:72:-2.46608,-0.60206,0	0/1:168:91,77:91:3264:77:2752:-39.3104,0,-243.3	1/1:160:0,160:0:0:160:5732:-190.977,-48.1648,0	0/1:57:30,27:30:1080:27:964:-14.5054,0,-80.3096	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:141:81,60:81:2912:60:2145:-29.0774,0,-219.166	1/1:43:0,43:0:0:43:1504:-50.1032,-12.9443,0	1/1:98:0,98:0:0:98:3500:-114.32,-29.5009,0	1/1:44:0,44:0:0:44:1552:-53.2056,-13.2453,0	1/1:55:0,55:0:0:55:1968:-66.3989,-16.5567,0	1/1:83:0,83:0:0:83:2952:-100.004,-24.9855,0	1/1:79:0,79:0:0:79:2836:-94.1717,-23.7814,0	0/1:176:101,75:101:3621:75:2683:-34.6513,0,-273.111	0/1:90:38,52:38:1364:52:1853:-33.7247,0,-94.0525	0/1:94:50,44:50:1796:44:1576:-23.1359,0,-133.545	0/1:132:70,62:70:2507:62:2220:-32.8104,0,-186.097	1/1:5:0,5:0:0:5:180:-5.97051,-1.50515,0	1/1:95:0,95:0:0:95:3412:-111.008,-28.5979,0	1/1:67:0,67:0:0:67:2389:-78.3368,-20.169,0	1/1:13:0,13:0:0:13:468:-15.3157,-3.91339,0	1/1:117:0,117:0:0:117:4192:-136.789,-35.2205,0	1/1:59:0,59:0:0:59:2104:-68.9465,-17.7608,0	.:.:.:.:.:.:.:.	0/1:12:5,7:5:180:7:252:-4.69444,0,-12.9397	1/1:96:1,95:1:36:95:3407:-117.526,-27.4022,0	1/1:129:1,128:1:36:128:4563:-145.837,-35.2346,0	1/1:4:0,4:0:0:4:144:-4.80237,-1.20412,0	1/1:150:0,150:0:0:150:5356:-175.182,-45.1545,0	0/1:122:54,68:54:1927:68:2421:-44.6258,0,-136.98	1/1:52:0,52:0:0:52:1872:-62.7285,-15.6536,0	1/1:51:0,51:0:0:51:1819:-59.6868,-15.3525,0	1/1:119:2,117:2:72:117:4196:-133.92,-28.9858,0	0/1:37:25,12:25:892:12:432:-3.00941,0,-69.4166	1/1:35:2,33:2:72:33:1167:-31.8207,-3.69933,0	1/1:36:0,36:0:0:36:1260:-42.1088,-10.8371,0	1/1:80:0,80:0:0:80:2838:-96.7529,-24.0824,0	1/1:10:0,10:0:0:10:360:-11.8112,-3.0103,0	0/1:116:58,58:58:2088:58:2084:-32.7803,0,-152.669	0/1:43:12,31:12:432:31:1104:-25.333,0,-26.2769	1/1:139:0,139:0:0:139:4956:-162.11,-41.8432,0	1/1:120:1,119:1:36:119:4248:-137.389,-34.6269,0	0/1:97:50,47:50:1796:47:1680:-25.8242,0,-132.722	1/1:75:0,75:0:0:75:2650:-87.5431,-22.5773,0	1/1:6:0,6:0:0:6:216:-7.13866,-1.80618,0	0/1:87:46,41:46:1656:41:1472:-21.8313,0,-123.138	0/1:69:37,32:37:1332:32:1144:-16.464,0,-99.4113	0/1:194:96,98:96:3444:98:3497:-56.065,0,-249.143	0/1:96:54,42:54:1936:42:1500:-22.2256,0,-144.884	0/1:73:34,39:34:1207:39:1392:-23.7038,0,-86.8702	1/1:58:0,58:0:0:58:2045:-67.7437,-17.4597,0	0/1:96:42,54:42:1508:54:1928:-34.2995,0,-107.114	0/1:37:20,17:20:716:17:608:-8.84732,0,-53.5395	1/1:69:0,69:0:0:69:2468:-82.5698,-20.7711,0	1/1:77:0,77:0:0:77:2738:-91.9664,-23.1793,0	0/1:61:31,30:31:1116:30:1076:-16.8085,0,-82.299	0/1:105:60,45:60:2156:45:1620:-23.0288,0,-162.519	0/1:46:32,14:32:1132:14:500:-2.5433,0,-88.2601	1/1:94:0,94:0:0:94:3360:-111.08,-28.2968,0	1/1:69:0,69:0:0:69:2480:-80.7289,-20.7711,0
chr01	31392995	.	G	C	25525.5	PASS	AB=0.504316;ABP=3.49766;AC=39;AF=0.211957;AN=184;AO=1523;CIGAR=1X;DP=6221;DPB=6221;DPRA=1.37164;EPP=3301.48;EPPR=10204.6;GTI=2;LEN=1;MEANALT=1;MQM=58.3933;MQMR=59.8844;NS=92;NUMALT=1;ODDS=0.361816;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54406;QR=167577;RO=4698;RPL=0;RPP=3310.16;RPPR=10195.9;RPR=1523;RUN=1;SAF=1;SAP=3301.48;SAR=1522;SRF=1;SRP=10195.9;SRR=4697;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:56:56,0:56:1994:0:0:0,-16.8577,-179.733	0/1:38:27,11:27:972:11:396:-24.5436,0,-76.3229	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/0:100:100,0:100:3576:0:0:0,-30.103,-321.935	0/1:64:37,27:37:1319:27:964:-67.6668,0,-99.7452	0/1:29:13,16:13:453:16:576:-43.4088,0,-32.3698	0/1:51:25,26:25:884:26:917:-67.3751,0,-64.5254	0/0:128:128,0:128:4574:0:0:0,-38.5318,-411.824	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.391	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.352	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:88:88,0:88:3136:0:0:0,-26.4906,-282.467	0/1:65:39,26:39:1400:26:936:-64.9701,0,-106.718	0/1:56:28,28:28:992:28:989:-72.4537,0,-72.7361	0/1:71:37,34:37:1324:34:1192:-86.1019,0,-98.0729	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:38:19,19:19:680:19:680:-50.0508,0,-50.09	0/1:49:26,23:26:928:23:820:-59.372,0,-69.0878	0/1:201:60,141:60:2121:141:5049:-393.729,0,-130.604	0/1:70:30,40:30:1076:40:1427:-107.651,0,-76.0808	0/1:108:33,75:33:1180:75:2692:-209.726,0,-73.9955	0/0:57:57,0:57:2008:0:0:0,-17.1587,-180.976	0/1:30:26,4:26:936:4:144:-4.28272,0,-75.5286	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:160:77,83:77:2734:83:2950:-217.175,0,-198.137	0/0:139:139,0:139:4947:0:0:0,-41.8432,-445.279	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:142:69,73:69:2453:73:2616:-192.274,0,-178.191	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:58:57,1:57:2035:1:36:0,-13.8619,-179.803	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:123:71,52:71:2529:52:1819:-126.714,0,-190.774	0/0:115:115,0:115:4066:0:0:0,-34.6184,-366.113	0/1:57:32,25:32:1135:25:900:-64.1231,0,-85.2994	0/1:5:1,4:1:36:4:129:-10.4225,0,-2.09312	0/1:88:44,44:44:1568:44:1580:-115.999,0,-114.921	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:166:166,0:166:5900:0:0:0,-49.971,-531.11	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.52	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.322	0/0:112:112,0:112:3993:0:0:0,-33.7154,-359.556	0/1:118:56,62:56:2008:62:2228:-165.24,0,-145.471	0/1:79:34,45:34:1216:45:1608:-121.175,0,-85.9644	0/1:67:30,37:30:1068:37:1332:-99.8366,0,-76.2631	0/1:106:67,39:67:2348:39:1400:-94.2254,0,-179.666	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.628	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.385	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.371	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.854	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:5,4:5:176:4:129:-9.21609,0,-13.4757	0/0:53:53,0:53:1872:0:0:0,-15.9546,-168.756	0/0:74:74,0:74:2625:0:0:0,-22.2762,-236.451	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:112:111,1:111:3957:1:21:0,-31.6154,-354.166	0/1:137:79,58:79:2827:58:2080:-146.055,0,-213.425	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/0:127:126,1:126:4489:1:36:0,-34.633,-400.581	0/1:140:46,94:46:1640:94:3376:-261.818,0,-105.743	0/0:30:30,0:30:1055:0:0:0,-9.0309,-95.26	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/0:6:6,0:6:192:0:0:0,-1.80618,-17.5934	0/1:103:52,51:52:1845:51:1817:-132.731,0,-135.322	0/1:50:29,21:29:1044:21:748:-52.4436,0,-79.2196	0/0:105:105,0:105:3696:0:0:0,-31.6081,-332.836	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/1:88:50,38:50:1792:38:1368:-96.7961,0,-135.072	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:49:27,22:27:972:22:777:-55.4549,0,-73.0364	0/1:102:47,55:47:1684:55:1980:-147.73,0,-121.106	0/1:156:86,70:86:3072:70:2500:-177.241,0,-229.746	0/1:61:31,30:31:1112:30:1071:-78.233,0,-82.0285	0/1:46:26,20:26:936:20:707:-50.0417,0,-70.7113	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/1:93:44,49:44:1568:49:1760:-130.66,0,-113.392	0/1:21:14,7:14:500:7:252:-16.7073,0,-39.0145	0/0:69:69,0:69:2443:0:0:0,-20.7711,-220.087	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	0/1:49:29,20:29:1036:20:720:-50.3774,0,-78.8034	0/1:61:30,31:30:1076:31:1108:-81.5687,0,-78.7896	0/0:89:88,1:88:3143:1:36:0,-23.1934,-279.478	0/0:99:99,0:99:3534:0:0:0,-29.802,-318.25
chr01	31400484	.	G	T	100667	PASS	AB=0.479858;ABP=10.9704;AC=148;AF=0.787234;AN=188;AO=3744;CIGAR=1X;DP=4928;DPB=4928;DPRA=52.9785;EPP=300.344;EPPR=1027.27;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.9813;MQMR=59.9569;NS=94;NUMALT=1;ODDS=0.151646;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133321;QR=42275;RO=1183;RPL=1513;RPP=302.008;RPPR=1027.27;RPR=2231;RUN=1;SAF=3743;SAP=8124.32;SAR=1;SRF=1183;SRP=2571.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	0/1:44:20,24:20:700:24:851:-63.6641,0,-50.0782	1/1:89:0,89:0:0:89:3143:-283.094,-26.7917,0	1/1:121:0,121:0:0:121:4318:-388.796,-36.4246,0	0/1:33:16,17:16:572:17:612:-45.4794,0,-41.8794	0/1:25:3,22:3:108:22:784:-63.3582,0,-2.54942	0/1:58:24,34:24:864:34:1216:-92.2868,0,-60.6228	1/1:119:0,119:0:0:119:4221:-380.07,-35.8226,0	1/1:42:0,42:0:0:42:1489:-134.304,-12.6433,0	1/1:39:0,39:0:0:39:1379:-124.408,-11.7402,0	1/1:19:0,19:0:0:19:667:-60.3546,-5.71957,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:28:11,17:11:387:17:612:-46.9846,0,-26.7371	0/1:10:4,6:4:129:6:216:-16.7802,0,-8.91736	0/1:21:11,10:11:383:10:345:-25.0592,0,-28.4816	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:141:74,67:74:2652:67:2408:-174.531,0,-196.481	0/1:102:44,58:44:1563:58:2052:-154.244,0,-110.256	0/1:80:63,17:63:2251:17:608:-30.9696,0,-178.77	1/1:76:0,76:0:0:76:2688:-242.078,-22.8783,0	1/1:37:1,36:1:36:36:1283:-112.175,-7.53984,0	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	0/1:189:101,88:101:3598:88:3120:-224.132,0,-267.132	1/1:171:0,170:0:0:170:6070:-546.043,-51.1751,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:177:75,102:75:2688:102:3656:-275.961,0,-188.882	1/1:85:0,85:0:0:85:3031:-273.02,-25.5876,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:10:0,10:0:0:10:340:-30.928,-3.0103,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	1/1:14:0,14:0:0:14:485:-43.977,-4.21442,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:36:19,17:19:676:17:612:-44.5764,0,-50.3309	1/1:156:0,156:0:0:156:5561:-500.615,-46.9607,0	0/1:11:2,9:2:72:9:322:-26.0129,0,-3.52539	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:69:45,24:45:1602:24:860:-56.9508,0,-123.698	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:118:1,117:1:36:117:4175:-372.334,-31.9233,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:16:0,16:0:0:16:551:-49.9139,-4.81648,0	1/1:57:0,57:0:0:57:2027:-182.702,-17.1587,0	1/1:70:0,70:0:0:70:2505:-225.701,-21.0721,0	0/1:128:76,52:76:2720:52:1843:-127.618,0,-206.512	0/1:62:28,34:28:1004:34:1211:-90.6317,0,-72.012	0/1:68:34,34:34:1212:34:1215:-89.1864,0,-88.9163	0/1:76:38,38:38:1360:38:1364:-100.169,0,-99.8223	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:77:0,77:0:0:77:2730:-245.942,-23.1793,0	1/1:55:0,55:0:0:55:1941:-174.964,-16.5567,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	1/1:51:0,51:0:0:51:1812:-163.362,-15.3525,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:6:1,5:1:36:5:161:-13.0004,0,-1.79209	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:29:0,29:0:0:29:1035:-93.4631,-8.72987,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:107:0,107:0:0:107:3819:-343.908,-32.2102,0	0/1:136:62,74:62:2228:74:2613:-194.447,0,-159.844	1/1:39:0,39:0:0:39:1395:-125.849,-11.7402,0	1/1:69:1,68:1:32:68:2414:-214.316,-17.5718,0	1/1:87:1,86:1:36:86:3063:-272.3,-22.5913,0	0/1:96:68,28:68:2440:28:987:-60.207,0,-190.466	1/1:13:0,13:0:0:13:455:-41.282,-3.91339,0	1/1:71:3,68:3:108:68:2420:-207.982,-11.298,0	1/1:33:0,33:0:0:33:1171:-105.697,-9.93399,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:107:47,60:47:1676:60:2148:-161.377,0,-118.917	0/1:33:25,8:25:896:8:284:-15.9694,0,-71.0264	1/1:107:0,107:0:0:107:3822:-344.178,-32.2102,0	1/1:75:0,75:0:0:75:2691:-242.434,-22.5773,0	0/1:56:22,34:22:788:34:1197:-91.1768,0,-54.3871	1/1:42:0,42:0:0:42:1484:-133.852,-12.6433,0	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	0/1:43:14,29:14:504:29:1044:-81.3305,0,-32.7538	0/1:99:43,56:43:1540:56:1983:-148.942,0,-109.091	0/1:155:105,50:105:3763:50:1792:-114.903,0,-291.982	0/1:34:18,16:18:648:16:568:-41.2168,0,-48.4169	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:29:15,14:15:540:14:500:-36.6063,0,-40.2067	0/1:17:10,7:10:351:7:252:-17.9114,0,-26.8092	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:29:14,15:14:496:15:532:-39.4832,0,-36.2444	0/1:14:12,2:12:432:2:68:-2.24329,0,-35.0068	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:24:0,24:0:0:24:848:-76.6391,-7.22472,0
chr01	31526146	.	ACCG	GCCA,GCCG	94191.5	PASS	AB=0.541981,0.45283;ABP=35.4636,43.9815;AC=149,37;AF=0.801075,0.198925;AN=186;AO=3464,965;CIGAR=1X2M1X,1X3M;DP=4450;DPB=4450;DPRA=0,1.44512;EPP=7524.99,2098.48;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.62366,2.21951;MQM=59.8998,59.9523;MQMR=60;NS=93;NUMALT=2;ODDS=1.06865;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=122302,34473;QR=36;RO=1;RPL=3464,965;RPP=7524.99,2098.48;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=7524.99,2098.48;SAR=3464,965;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,13,0:0:0:13,0:465,0:-41.8275,-3.91339,0,-41.8275,-3.91339,-41.8275	1/2:60:0,39,20:0:0:39,20:1395,716:-172.134,-58.3874,-46.6472,-113.744,0,-107.724	1/1:52:0,50,0:0:0:50,0:1777,0:-159.902,-15.0515,0,-159.902,-15.0515,-159.902	1/1:109:0,107,0:0:0:107,0:3785,0:-340.518,-32.2102,0,-340.518,-32.2102,-340.518	1/2:32:0,20,12:0:0:20,12:714,432:-93.8167,-35.6088,-29.5882,-58.5666,0,-54.9542	1/2:15:0,13,2:0:0:13,2:442,72:-42.0684,-6.23466,-2.32127,-36.1909,0,-35.5889	1/2:54:0,23,31:0:0:23,31:805,1112:-156.55,-91.0594,-84.1357,-65.844,0,-56.5121	1/1:56:0,56,0:0:0:56,0:1988,0:-179.194,-16.8577,0,-179.194,-16.8577,-179.194	1/1:35:0,35,0:0:0:35,0:1221,0:-110.193,-10.5361,0,-110.193,-10.5361,-110.193	1/1:18:0,18,0:0:0:18,0:637,0:-57.6348,-5.41854,0,-57.6348,-5.41854,-57.6348	1/1:28:0,28,0:0:0:28,0:1007,0:-90.9463,-8.42884,0,-90.9463,-8.42884,-90.9463	1/1:48:0,48,0:0:0:48,0:1697,0:-153.015,-14.4494,0,-153.015,-14.4494,-153.015	1/2:43:0,23,20:0:0:23,20:810,707:-123.877,-57.934,-51.0103,-66.2955,0,-60.2749	1/2:43:0,26,17:0:0:26,17:921,608:-124.958,-49.9345,-42.1077,-75.3797,0,-70.2622	1/2:39:0,25,13:0:0:25,13:897,464:-111.05,-37.8801,-30.3544,-73.2227,0,-69.3094	1/1:26:0,26,0:0:0:26,0:922,0:-83.2971,-7.82678,0,-83.2971,-7.82678,-83.2971	1/1:30:0,30,0:0:0:30,0:1065,0:-96.161,-9.0309,0,-96.161,-9.0309,-96.161	1/2:33:0,19,14:0:0:19,14:674,504:-96.3937,-41.4837,-35.7641,-55.2676,0,-51.0532	1/2:21:0,12,9:0:0:12,9:422,324:-61.1432,-26.7966,-23.1842,-34.7028,0,-31.9936	1/2:87:0,47,40:0:0:47,40:1675,1428:-253.309,-116.776,-102.628,-136.889,0,-124.848	1/2:69:0,32,37:0:0:32,37:1117,1315:-198.363,-107.513,-97.8798,-91.2022,0,-80.0641	1/2:46:0,14,32:0:0:14,32:503,1144:-134.671,-93.6366,-89.4221,-41.3933,0,-31.7603	1/1:45:0,44,1:0:0:44,1:1539,36:-138.438,-13.2453,0,-135.5,-9.94808,-135.199	1/1:42:0,41,1:0:0:41,1:1470,36:-132.237,-12.3422,0,-129.299,-9.04499,-128.998	1/1:45:0,45,0:0:0:45,0:1572,0:-141.768,-13.5464,0,-141.768,-13.5464,-141.768	1/2:128:0,71,56:0:0:71,56:2521,2004:-368.836,-163.436,-142.063,-205.417,0,-188.559	1/1:83:0,83,0:0:0:83,0:2964,0:-266.994,-24.9855,0,-266.994,-24.9855,-266.994	1/1:21:0,21,0:0:0:21,0:734,0:-66.3808,-6.32163,0,-66.3808,-6.32163,-66.3808	1/2:129:0,91,38:0:0:91,38:3208,1368:-373.171,-111.982,-84.588,-261.547,0,-250.107	1/1:62:0,61,0:0:0:61,0:2158,0:-194.126,-18.3628,0,-194.126,-18.3628,-194.126	1/1:61:0,61,0:0:0:61,0:2139,0:-192.776,-18.3628,0,-192.776,-18.3628,-192.776	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:2:0,2,0:0:0:2,0:62,0:-5.8882,-0.60206,0,-5.8882,-0.60206,-5.8882	1/1:9:0,9,0:0:0:9,0:318,0:-28.9604,-2.70927,0,-28.9604,-2.70927,-28.9604	1/1:6:0,6,0:0:0:6,0:215,0:-19.6992,-1.80618,0,-19.6992,-1.80618,-19.6992	1/2:140:0,69,71:0:0:69,71:2451,2534:-406.647,-206.937,-186.166,-200.066,0,-178.693	1/1:123:0,122,0:0:0:122,0:4311,0:-387.807,-36.7257,0,-387.807,-36.7257,-387.807	1/2:31:0,11,20:0:0:11,20:396,716:-91.0594,-58.7471,-55.4358,-32.6714,0,-26.6508	.:.:.:.:.:.:.:.	1/2:59:0,40,19:0:0:40,19:1399,680:-169.619,-55.8096,-43.7684,-114.164,0,-108.445	1/1:31:0,31,0:0:0:31,0:1088,0:-98.1916,-9.33193,0,-98.1916,-9.33193,-98.1916	1/1:69:0,68,0:0:0:68,0:2386,0:-214.638,-20.47,0,-214.638,-20.47,-214.638	1/1:44:0,44,0:0:0:44,0:1542,0:-139.07,-13.2453,0,-139.07,-13.2453,-139.07	1/1:35:0,35,0:0:0:35,0:1233,0:-111.272,-10.5361,0,-111.272,-10.5361,-111.272	1/1:53:0,53,0:0:0:53,0:1877,0:-168.836,-15.9546,0,-168.836,-15.9546,-168.836	1/1:54:0,54,0:0:0:54,0:1890,0:-170.342,-16.2556,0,-170.342,-16.2556,-170.342	1/2:83:0,41,41:0:0:41,41:1433,1464:-235.915,-119.354,-107.012,-116.554,0,-104.212	1/2:47:0,33,14:0:0:33,14:1177,495:-136.618,-40.6686,-30.7346,-96.3039,0,-92.0894	1/2:57:0,31,23:0:0:31,23:1097,820:-156.192,-66.8394,-57.5075,-89.3484,0,-82.4247	1/2:94:0,64,29:0:0:64,29:2231,1040:-266.251,-84.8247,-65.5588,-181.422,0,-172.692	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:63:0,62,0:0:0:62,0:2177,0:-195.822,-18.6639,0,-195.822,-18.6639,-195.822	1/1:20:0,20,0:0:0:20,0:703,0:-63.5939,-6.0206,0,-63.5939,-6.0206,-63.5939	1/1:11:0,11,0:0:0:11,0:388,0:-35.2573,-3.31133,0,-35.2573,-3.31133,-35.2573	1/1:45:0,45,0:0:0:45,0:1562,0:-140.867,-13.5464,0,-140.867,-13.5464,-140.867	1/1:22:0,21,0:0:0:21,0:745,0:-67.0244,-6.32163,0,-67.0244,-6.32163,-67.0244	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:9:0,3,6:0:0:3,6:105,212:-2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chr01	31526161	.	C	T	14633	PASS	AB=0.444763;ABP=58.4249;AC=37;AF=0.198925;AN=186;AO=933;CIGAR=1X;DP=4384;DPB=4384;DPRA=1.44661;EPP=2028.99;EPPR=7466.36;GTI=1;LEN=1;MEANALT=1.20513;MQM=59.9925;MQMR=59.9072;NS=93;NUMALT=1;ODDS=1.68688;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33211;QR=122829;RO=3437;RPL=933;RPP=2028.99;RPPR=7466.36;RPR=0;RUN=1;SAF=0;SAP=2028.99;SAR=933;SRF=0;SRP=7466.36;SRR=3437;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9733	0/1:60:40,20:40:1440:20:716:-46.7059,0,-111.831	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.028	0/0:109:108,0:108:3872:0:0:0,-32.5112,-348.312	0/1:31:19,12:19:684:12:432:-29.8893,0,-52.5584	0/1:16:13,3:13:464:3:108:-5.25869,0,-37.281	0/1:52:22,30:22:784:30:1072:-81.1389,0,-55.2304	0/0:54:54,0:54:1917:0:0:0,-16.2556,-172.805	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6538	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.5	0/1:43:23,19:23:828:19:684:-48.8872,0,-61.841	0/1:42:26,13:26:936:13:464:-29.9981,0,-72.4595	0/1:38:26,12:26:936:12:432:-27.7821,0,-73.1203	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:32:18,14:18:640:14:500:-35.7032,0,-48.2964	0/1:21:13,8:13:460:8:276:-18.8536,0,-35.4137	0/1:85:46,37:46:1640:37:1324:-94.1169,0,-122.544	0/1:65:31,34:31:1108:34:1197:-88.4656,0,-80.464	0/1:45:14,31:14:500:31:1093:-85.1313,0,-31.7898	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.771	0/0:41:40,1:40:1440:1:21:0,-10.2423,-127.798	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	0/1:128:72,56:72:2564:56:2008:-142.461,0,-192.459	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.151	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:128:91,37:91:3244:37:1282:-77.1447,0,-253.637	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:140:70,69:70:2512:69:2462:-179.628,0,-184.121	0/0:121:120,0:120:4285:0:0:0,-36.1236,-385.467	0/1:31:11,20:11:396:20:712:-55.0747,0,-26.6508	.:.:.:.:.:.:.:.	0/1:59:41,18:41:1441:18:640:-40.1685,0,-112.223	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7363	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.104	0/0:53:53,0:53:1900:0:0:0,-15.9546,-170.651	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.35	0/1:83:41,42:41:1472:42:1508:-111.029,0,-107.743	0/1:47:33,13:33:1169:13:449:-26.5313,0,-91.3082	0/1:56:33,23:33:1184:23:820:-57.2648,0,-90.0106	0/1:92:64,28:64:2265:28:1000:-62.6206,0,-176.409	0/0:4:3,0:3:108:0:0:0,-0.90309,-9.71534	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.673	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.821	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/0:75:75,0:75:2681:0:0:0,-22.5772,-241.533	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.889	0/1:102:67,34:67:2404:34:1220:-79.343,0,-185.853	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:108:106,2:106:3767:2:72:0,-25.6745,-332.372	0/1:61:25,36:25:900:36:1284:-97.5006,0,-62.9558	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:57:38,19:38:1348:19:672:-43.6481,0,-104.462	0/1:31:12,19:12:432:19:684:-52.5584,0,-29.8893	0/0:75:75,0:75:2654:0:0:0,-22.5772,-239.09	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.53	0/1:30:20,10:20:716:10:360:-23.7134,0,-55.7335	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:50:14,36:14:500:36:1273:-99.8194,0,-30.2847	0/1:54:30,23:30:1076:23:820:-57.8082,0,-80.8385	0/1:112:62,50:62:2208:50:1788:-127.487,0,-165.266	0/1:46:25,21:25:885:21:756:-54.5198,0,-66.1191	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/1:88:40,47:40:1440:47:1684:-125.298,0,-103.348	0/1:29:18,11:18:644:11:381:-25.8908,0,-49.5607	0/0:51:51,0:51:1805:0:0:0,-15.3525,-162.73	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:37:15,22:15:540:22:773:-58.7514,0,-37.7984	0/1:40:14,26:14:496:26:920:-71.0759,0,-32.9331	0/0:52:52,0:52:1864:0:0:0,-15.6536,-167.849	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445
chr01	31526624	.	GGAA	TGAG,TGAA	183000	PASS	AB=0.46679,0.530805;ABP=54.7886,47.5602;AC=150,38;AF=0.797872,0.202128;AN=188;AO=8371,2884;CIGAR=1X2M1X,1X3M;DP=11273;DPB=11273;DPRA=0,1.45012;EPP=18180.4,6256.85;EPPR=5.18177;GTI=5;LEN=4,1;MEANALT=1.68085,2.25532;MQM=29.0972,41.518;MQMR=58;NS=94;NUMALT=2;ODDS=1.51085;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=298066,102964;QR=36;RO=1;RPL=0,1;RPP=18180.4,6256.85;RPPR=5.18177;RPR=8371,2883;RUN=1,1;SAF=8371,2884;SAP=18180.4,6265.54;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:83:0,83,0:0:0:83,0:2928,0:-203.054,-24.9855,0,-203.054,-24.9855,-203.054	1/2:154:0,85,69:0:0:85,69:3054,2446:-374.539,-191.929,-166.342,-182.921,0,-162.15	1/1:150:0,150,0:0:0:150,0:5325,0:-368.001,-45.1545,0,-368.001,-45.1545,-368.001	1/1:205:0,205,0:0:0:205,0:7300,0:-531.443,-61.7112,0,-531.443,-61.7112,-531.443	1/2:72:0,29,43:0:0:29,43:1043,1548:-183.883,-121.241,-112.511,-62.945,0,-50.0007	1/2:69:0,29,40:0:0:29,40:1027,1432:-174.92,-112.726,-103.996,-62.4963,0,-50.4551	1/2:216:0,90,125:0:0:90,125:3223,4450:-557.046,-351.2,-324.108,-205.951,0,-168.322	1/1:167:0,167,0:0:0:167,0:5917,0:-409.779,-50.272,0,-409.779,-50.272,-409.779	1/1:130:0,130,0:0:0:130,0:4611,0:-317.925,-39.1339,0,-317.925,-39.1339,-317.925	1/1:131:0,130,0:0:0:130,0:4601,0:-334.384,-39.1339,0,-334.384,-39.1339,-334.384	1/1:75:0,74,0:0:0:74,0:2641,0:-191.354,-22.2762,0,-191.354,-22.2762,-191.354	1/1:112:0,112,0:0:0:112,0:3997,0:-274.408,-33.7154,0,-274.408,-33.7154,-274.408	1/2:101:0,55,46:0:0:55,46:1957,1633:-246.556,-128.467,-111.91,-118.4,0,-104.552	1/2:138:0,53,85:0:0:53,85:1891,3026:-350.199,-235.941,-219.986,-114.558,0,-88.9704	1/2:79:0,41,38:0:0:41,38:1465,1368:-202.755,-108.703,-96.3612,-94.3722,0,-82.9331	1/1:59:0,59,0:0:0:59,0:2111,0:-144.724,-17.7608,0,-144.724,-17.7608,-144.724	1/1:86:0,86,0:0:0:86,0:3034,0:-209.722,-25.8886,0,-209.722,-25.8886,-209.722	1/2:79:0,42,37:0:0:42,37:1493,1316:-193.592,-103.365,-90.7219,-90.5361,0,-79.398	1/2:47:0,22,25:0:0:22,25:792,896:-117.945,-70.8377,-64.215,-47.4141,0,-39.8883	1/2:185:0,78,107:0:0:78,107:2788,3803:-479.62,-300.49,-277.009,-179.443,0,-147.232	1/2:187:0,95,92:0:0:95,92:3374,3291:-460.664,-256.45,-227.852,-204.522,0,-176.828	1/2:112:0,38,74:0:0:38,74:1355,2622:-299.526,-208.566,-197.126,-91.2759,0,-68.9997	1/1:189:0,189,0:0:0:189,0:6734,0:-489.368,-56.8947,0,-489.368,-56.8947,-489.368	1/1:143:0,140,3:0:0:140,3:4974,108:-343.623,-42.1442,0,-335.197,-33.3747,-334.294	1/1:91:0,91,0:0:0:91,0:3233,0:-222.326,-27.3937,0,-222.326,-27.3937,-222.326	1/2:319:0,174,143:0:0:174,143:6168,5093:-824.165,-406.062,-353.682,-418.209,0,-375.161	1/1:227:0,227,0:0:0:227,0:8103,0:-557.975,-68.3338,0,-557.975,-68.3338,-557.975	1/1:47:0,47,0:0:0:47,0:1683,0:-115.375,-14.1484,0,-115.375,-14.1484,-115.375	1/2:262:1,99,160:1:36:99,160:3532,5748:-695.751,-456.439,-429.573,-236.693,0,-191.465	1/1:176:0,175,0:0:0:175,0:6210,0:-429.081,-52.6803,0,-429.081,-52.6803,-429.081	1/1:158:0,157,1:0:0:157,1:5560,36:-405.888,-47.2617,0,-403.036,-44.06,-402.735	1/1:5:0,5,0:0:0:5,0:180,0:-12.5865,-1.50515,0,-12.5865,-1.50515,-12.5865	1/1:20:0,20,0:0:0:20,0:719,0:-50.1616,-6.0206,0,-50.1616,-6.0206,-50.1616	1/1:3:0,3,0:0:0:3,0:106,0:-7.63318,-0.90309,0,-7.63318,-0.90309,-7.63318	1/1:10:0,10,0:0:0:10,0:354,0:-24.6408,-3.0103,0,-24.6408,-3.0103,-24.6408	1/1:18:0,18,0:0:0:18,0:644,0:-44.5454,-5.41854,0,-44.5454,-5.41854,-44.5454	1/2:244:0,104,140:0:0:104,140:3703,5014:-650.406,-399.954,-368.647,-250.773,0,-208.629	1/1:230:0,230,0:0:0:230,0:8163,0:-562.429,-69.2369,0,-562.429,-69.2369,-562.429	1/2:101:0,46,54:0:0:46,54:1655,1918:-249.629,-150.242,-136.394,-99.4178,0,-83.1621	1/2:5:0,2,3:0:0:2,3:72,108:-13.0639,-8.76948,-8.16742,-4.59672,0,-3.69363	1/2:150:0,84,66:0:0:84,66:2973,2350:-363.653,-183.382,-158.095,-180.582,0,-160.714	1/1:59:0,59,0:0:0:59,0:2123,0:-145.44,-17.7608,0,-145.44,-17.7608,-145.44	1/1:173:0,172,0:0:0:172,0:6151,0:-421.139,-51.7772,0,-421.139,-51.7772,-421.139	1/1:79:0,79,0:0:0:79,0:2832,0:-204.85,-23.7814,0,-204.85,-23.7814,-204.85	1/1:80:0,79,0:0:0:79,0:2811,0:-204.654,-23.7814,0,-204.654,-23.7814,-204.654	1/1:157:0,156,1:0:0:156,1:5559,36:-421.059,-46.9607,0,-418.177,-43.7256,-417.876	1/1:128:0,127,1:0:0:127,1:4517,36:-311.472,-38.2308,0,-308.64,-35.0511,-308.339	1/2:172:0,89,83:0:0:89,83:3194,2973:-439.166,-234.854,-208.062,-204.631,0,-179.646	1/2:153:0,73,79:0:0:73,79:2603,2824:-390.563,-223.499,-201.523,-167.154,0,-143.372	1/2:140:0,55,85:0:0:55,85:1952,3010:-361.32,-237.115,-220.558,-124.512,0,-98.9247	1/2:253:0,128,124:0:0:128,124:4548,4438:-663.041,-354.378,-315.846,-308.699,0,-271.371	1/1:15:0,15,0:0:0:15,0:539,0:-39.4577,-4.51545,0,-39.4577,-4.51545,-39.4577	1/1:160:0,160,0:0:0:160,0:5669,0:-391.437,-48.1648,0,-391.437,-48.1648,-391.437	1/1:79:0,79,0:0:0:79,0:2822,0:-213.122,-23.7814,0,-213.122,-23.7814,-213.122	1/1:34:0,34,0:0:0:34,0:1205,0:-83.168,-10.235,0,-83.168,-10.235,-83.168	1/1:129:0,129,0:0:0:129,0:4593,0:-315.739,-38.8329,0,-315.739,-38.8329,-315.739	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chr01	31526693	.	T	C	209919	PASS	AB=0.468606;ABP=60.4113;AC=147;AF=0.790323;AN=186;AO=10043;CIGAR=1X;DP=13630;DPB=13630;DPRA=0;EPP=21785.1;EPPR=7789.91;GTI=5;LEN=1;MEANALT=1.01075;MQM=59.9913;MQMR=59.9835;NS=93;NUMALT=1;ODDS=1.10636;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=357611;QR=127998;RO=3586;RPL=0;RPP=21811.1;RPPR=7789.91;RPR=10043;RUN=1;SAF=3;SAP=21785.1;SAR=10040;SRF=0;SRP=7789.91;SRR=3586;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:65:0,65:0:0:65:2315:-208.58,-19.567,0	0/1:253:132,121:132:4715:121:4340:-314.614,0,-348.349	1/1:190:0,190:0:0:190:6785:-610.724,-57.1957,0	1/1:390:0,390:0:0:390:13852:-1246.46,-117.402,0	0/1:131:66,65:66:2324:65:2320:-169.626,0,-169.984	0/1:67:24,43:24:852:43:1544:-119.084,0,-56.8314	0/1:234:112,122:112:4004:122:4364:-322.449,0,-290.109	1/1:146:0,146:0:0:146:5235:-471.286,-43.9504,0	1/1:159:0,159:0:0:159:5662:-509.702,-47.8638,0	1/1:156:0,156:0:0:156:5572:-501.596,-46.9607,0	1/1:61:0,61:0:0:61:2168:-195.387,-18.3628,0	1/1:86:0,86:0:0:86:3012:-271.31,-25.8886,0	0/1:87:47,40:47:1657:40:1415:-101.457,0,-123.226	0/1:89:36,53:36:1292:53:1895:-144.036,0,-89.7921	0/1:97:47,50:47:1668:50:1792:-132.363,0,-121.207	1/1:63:0,63:0:0:63:2216:-199.703,-18.9649,0	1/1:58:0,58:0:0:58:2059:-185.581,-17.4597,0	0/1:80:43,37:43:1531:37:1328:-95.7398,0,-114	0/1:36:20,16:20:716:16:570:-40.7957,0,-53.9306	0/1:434:223,211:223:7941:211:7521:-546.285,0,-584.068	0/1:210:119,91:119:4233:91:3243:-228.875,0,-317.934	0/1:199:138,61:138:4928:61:2188:-137.281,0,-383.767	1/1:198:1,197:1:36:197:7029:-629.074,-56.0057,0	1/1:146:10,136:10:360:136:4809:-400.221,-11.2061,0	1/1:86:0,86:0:0:86:3076:-277.068,-25.8886,0	0/1:485:281,204:281:10055:204:7312:-512.129,0,-757.696	1/1:241:0,241:0:0:241:8602:-774.176,-72.5482,0	1/1:43:0,43:0:0:43:1517:-136.821,-12.9443,0	0/1:438:200,238:200:7133:238:8467:-630.182,0,-510.178	1/1:181:1,180:1:36:180:6416:-573.931,-50.8882,0	1/1:235:0,235:0:0:235:8381:-754.295,-70.7421,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:20:2,18:2:72:18:633:-51.2745,0,-0.816122	0/1:248:126,122:126:4507:122:4343:-316.392,0,-331.142	1/1:238:0,238:0:0:238:8502:-765.181,-71.6451,0	0/1:79:52,27:52:1855:27:964:-63.2955,0,-143.448	.:.:.:.:.:.:.:.	0/1:292:150,142:150:5368:142:5060:-367.645,0,-395.352	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	1/1:233:0,233:0:0:233:8299:-746.917,-70.14,0	1/1:91:0,91:0:0:91:3207:-288.85,-27.3937,0	1/1:69:1,68:1:36:68:2415:-214.008,-17.1728,0	1/1:179:0,179:0:0:179:6397:-575.818,-53.8844,0	1/1:189:0,189:0:0:189:6704:-603.437,-56.8947,0	0/1:310:164,146:164:5857:146:5219:-376.526,0,-433.877	0/1:170:75,95:75:2696:95:3381:-253.33,0,-191.709	0/1:205:116,89:116:4144:89:3192:-225.792,0,-311.433	0/1:242:129,113:129:4542:113:4032:-290.217,0,-336.099	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:220:0,220:0:0:220:7842:-705.808,-66.2266,0	1/1:108:0,108:0:0:108:3831:-344.985,-32.5112,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:207:0,207:0:0:207:7365:-662.9,-62.3132,0	1/1:66:1,65:1:36:65:2297:-203.391,-16.2697,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	1/1:119:0,119:0:0:119:4184:-376.742,-35.8226,0	1/1:118:1,116:1:36:116:4105:-366.04,-31.9821,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:309:0,309:0:0:309:11027:-992.324,-93.0183,0	0/1:307:159,148:159:5676:148:5247:-379.95,0,-418.545	1/1:107:0,107:0:0:107:3831:-344.986,-32.2102,0	1/1:172:1,171:1:36:171:6100:-545.5,-48.1789,0	1/1:297:3,294:3:108:294:10465:-931.694,-79.3307,0	0/1:197:110,87:110:3927:87:3108:-220.645,0,-294.32	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	1/1:108:0,108:0:0:108:3860:-347.596,-32.5112,0	1/1:98:1,97:1:36:97:3441:-306.307,-25.9027,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:194:103,91:103:3680:91:3221:-231.711,0,-273.004	0/1:58:32,26:32:1148:26:932:-66.7391,0,-86.1701	1/1:376:0,376:0:0:376:13343:-1200.67,-113.187,0	1/1:258:0,258:0:0:258:9168:-825.094,-77.6657,0	0/1:133:80,53:80:2867:53:1900:-131.241,0,-218.229	1/1:123:2,121:2:72:121:4324:-382.5,-30.19,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:246:147,99:147:5264:99:3533:-244.125,0,-399.84	0/1:217:141,76:141:5032:76:2699:-177.831,0,-387.705	0/1:360:186,174:186:6656:174:6163:-446.398,0,-490.747	0/1:92:52,40:52:1864:40:1436:-101.843,0,-140.345	0/1:91:43,48:43:1544:48:1716:-127.332,0,-111.859	1/1:101:0,101:0:0:101:3559:-320.521,-30.404,0	0/1:157:76,81:76:2710:81:2859:-210.285,0,-196.881	0/1:50:25,25:25:896:25:888:-65.1875,0,-65.9089	1/1:89:0,89:0:0:89:3144:-283.184,-26.7917,0	1/1:67:0,67:0:0:67:2384:-214.817,-20.169,0	0/1:42:18,24:18:632:24:860:-65.0786,0,-44.5635	0/1:69:35,34:35:1252:34:1216:-88.9755,0,-92.214	0/1:64:43,21:43:1536:21:741:-47.747,0,-119.267	1/1:208:0,208:0:0:208:7430:-668.744,-62.6142,0	1/1:86:0,86:0:0:86:3059:-275.54,-25.8886,0
chr01	31526738	.	A	C	60348	PASS	AB=0.528926;ABP=51.3749;AC=38;AF=0.204301;AN=186;AO=3542;CIGAR=1X;DP=13581;DPB=13581;DPRA=1.34133;EPP=7694.37;EPPR=21782.9;GTI=5;LEN=1;MEANALT=1.12245;MQM=59.9831;MQMR=59.9906;NS=93;NUMALT=1;ODDS=0.384038;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126348;QR=358518;RO=10030;RPL=3542;RPP=7694.37;RPPR=21782.9;RPR=0;RUN=1;SAF=0;SAP=7694.37;SAR=3542;SRF=0;SRP=21782.9;SRR=10030;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:249:118,131:118:4221:131:4685:-346.853,0,-305.098	0/0:191:191,0:191:6829:0:0:0,-57.4967,-614.68	0/0:383:383,0:383:13729:0:0:0,-115.294,-1235.38	0/1:131:67,64:67:2377:64:2261:-164.317,0,-174.751	0/1:68:43,25:43:1536:25:900:-60.851,0,-118.063	0/1:229:120,109:120:4289:109:3916:-283.696,0,-317.205	0/0:147:147,0:147:5238:0:0:0,-44.2514,-471.554	0/0:157:157,0:157:5525:0:0:0,-47.2617,-497.378	0/0:151:151,0:151:5386:0:0:0,-45.4555,-484.87	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.914	0/1:87:41,46:41:1472:46:1644:-122.059,0,-106.587	0/1:92:57,35:57:2036:35:1244:-84.5699,0,-155.818	0/1:98:51,47:51:1832:47:1692:-123.066,0,-135.66	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:79:37,42:37:1324:42:1485:-110.161,0,-95.6807	0/1:35:16,18:16:572:18:648:-48.057,0,-41.2187	0/1:431:210,221:210:7509:221:7884:-579.842,0,-546.107	0/1:215:94,121:94:3365:121:4310:-323.353,0,-238.343	0/1:202:62,140:62:2224:140:5001:-389.429,0,-139.616	0/0:203:202,1:202:7225:1:36:0,-57.5108,-646.705	0/0:142:133,9:133:4760:9:324:0,-13.2404,-399.052	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.797	0/1:482:205,276:205:7344:276:9831:-739.262,0,-515.853	0/0:238:238,0:238:8544:0:0:0,-71.6451,-768.955	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:438:237,200:237:8467:200:7150:-511.644,0,-630.118	0/0:182:181,1:181:6446:1:36:0,-51.1892,-576.629	0/0:230:230,0:230:8229:0:0:0,-69.2369,-740.62	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:22:21,1:21:737:1:36:0,-3.02438,-63.0524	0/1:252:128,124:128:4592:124:4433:-323.28,0,-337.584	0/0:237:237,0:237:8457:0:0:0,-71.3441,-761.134	0/1:78:28,50:28:1008:50:1788:-137.722,0,-67.556	.:.:.:.:.:.:.:.	0/1:286:141,145:141:4980:145:5169:-379.257,0,-362.254	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:231:231,0:231:8234:0:0:0,-69.5379,-741.073	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.538	0/0:68:67,1:67:2385:1:36:0,-16.8718,-211.308	0/0:180:180,0:180:6450:0:0:0,-54.1854,-580.582	0/0:193:193,0:193:6877:0:0:0,-58.0988,-619.001	0/1:310:147,163:147:5272:163:5821:-430.639,0,-381.296	0/1:168:95,73:95:3397:73:2597:-183.404,0,-255.37	0/1:207:90,117:90:3208:117:4151:-311.458,0,-226.631	0/1:241:111,130:111:3996:130:4588:-340.536,0,-287.271	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:220:220,0:220:7885:0:0:0,-66.2266,-709.673	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:208:207,0:207:7390:0:0:0,-62.3132,-664.786	0/0:63:62,1:62:2205:1:36:0,-15.3666,-195.115	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.426	0/0:116:115,1:115:4124:1:36:0,-31.3212,-367.745	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:312:312,0:312:11150:0:0:0,-93.9214,-1003.39	0/1:306:149,156:149:5332:156:5579:-410.058,0,-387.84	0/0:109:109,0:109:3870:0:0:0,-32.8123,-348.493	0/0:169:168,1:168:6028:1:36:0,-47.2758,-539.024	0/0:292:289,3:289:10340:3:108:0,-77.8256,-920.449	0/1:193:86,107:86:3050:107:3844:-288.056,0,-216.629	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.671	0/0:100:99,1:99:3540:1:36:0,-26.5047,-315.211	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:195:89,106:89:3181:106:3748:-278.818,0,-227.812	0/1:58:25,33:25:896:33:1154:-86.7025,0,-63.5006	0/0:372:372,0:372:13210:0:0:0,-111.983,-1188.7	0/0:259:259,0:259:9284:0:0:0,-77.9668,-835.526	0/1:133:53,80:53:1900:80:2868:-218.32,0,-131.241	0/0:123:118,2:118:4214:2:72:0,-29.6267,-372.63	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:244:99,145:99:3552:145:5179:-392.795,0,-246.436	0/1:214:76,138:76:2697:138:4909:-377.541,0,-178.553	0/1:355:172,183:172:6141:183:6538:-481.635,0,-445.924	0/1:91:41,50:41:1476:50:1779:-132.997,0,-105.742	0/1:92:50,42:50:1788:42:1500:-107.6,0,-133.508	0/0:101:101,0:101:3617:0:0:0,-30.404,-325.734	0/1:155:82,73:82:2944:73:2604:-187.949,0,-218.534	0/1:50:25,25:25:892:25:892:-65.5482,0,-65.5482	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:42:24,18:24:845:18:648:-46.0086,0,-63.7238	0/1:68:34,34:34:1220:34:1212:-88.9163,0,-89.6368	0/1:59:17,42:17:612:42:1508:-118.254,0,-37.6527	0/0:211:210,0:210:7497:0:0:0,-63.2163,-674.414	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667
chr01	31869662	.	TGA	GGG,TGG	85041.1	PASS	AB=0.519832,0.476562;ABP=8.69476,10.9497;AC=148,38;AF=0.795699,0.204301;AN=186;AO=3191,800;CIGAR=1X1M1X,2M1X;DP=4000;DPB=4003.33;DPRA=0,1.12246;EPP=6932.18,1740.19;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.52688,2.12195;MQM=59.8772,59.9312;MQMR=60;NS=93;NUMALT=2;ODDS=3.71053;PAIRED=0,0;PAIREDR=0;PAO=5,5;PQA=104,104;PQR=0;PRO=0;QA=112081,28628;QR=36;RO=1;RPL=0,0;RPP=6932.18,1740.19;RPPR=5.18177;RPR=3191,800;RUN=1,1;SAF=3191,800;SAP=6932.18,1740.19;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20,0:0:0:20,0:704,0:-63.6785,-6.0206,0,-63.6785,-6.0206,-63.6785	1/2:45:0,28,17:0:0:28,17:989,612:-130.808,-50.2959,-41.8671,-80.8692,0,-75.7517	1/1:33:0,33,0:0:0:33,0:1164,0:-105.066,-9.93399,0,-105.066,-9.93399,-105.066	1/1:49:0,49,0:0:0:49,0:1693,0:-152.65,-14.7505,0,-152.65,-14.7505,-152.65	1/2:29:0,18,11:0:0:18,11:644,396:-85.1847,-32.6714,-27.2529,-52.8723,0,-49.5609	1/2:28:0,9,19:0:0:9,19:304,661:-78.7282,-54.092,-51.3828,-24.9771,0,-19.2575	1/2:41:0,26,15:0:0:26,15:915,540:-118.903,-44.4211,-36.5943,-74.8386,0,-70.3231	1/1:84:0,83,0:0:0:83,0:2930,0:-263.561,-24.9855,0,-263.561,-24.9855,-263.561	1/1:47:0,47,0:0:0:47,0:1647,0:-148.516,-14.1484,0,-148.516,-14.1484,-148.516	1/1:54:0,54,0:0:0:54,0:1908,0:-171.948,-16.2556,0,-171.948,-16.2556,-171.948	1/1:24:0,24,0:0:0:24,0:851,0:-76.9098,-7.22472,0,-76.9098,-7.22472,-76.9098	1/1:41:0,41,0:0:0:41,0:1421,0:-128.181,-12.3422,0,-128.181,-12.3422,-128.181	1/2:22:0,9,13:0:0:9,13:322,464:-64.4418,-38.1841,-35.4748,-26.6149,0,-22.7016	1/2:23:0,6,17:0:0:6,17:216,612:-67.8629,-50.2393,-48.4331,-17.9342,0,-12.8167	1/2:25:0,18,7:0:0:18,7:605,243:-69.1014,-20.1003,-14.6817,-49.3451,0,-47.2379	1/1:31:0,31,0:0:0:31,0:1088,0:-98.2262,-9.33193,0,-98.2262,-9.33193,-98.2262	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9146,-8.72987,0,-93.9146,-8.72987,-93.9146	1/2:27:0,17,10:0:0:17,10:607,355:-78.7688,-29.2801,-24.1626,-49.8443,0,-46.834	1/2:18:0,9,9:0:0:9,9:304,324:-51.4257,-26.7966,-24.0873,-24.9778,0,-22.2686	1/2:45:0,24,21:0:0:24,21:804,737:-125.428,-60.329,-53.1043,-65.4427,0,-59.1211	1/2:74:0,43,30:0:0:43,30:1523,1076:-211.821,-87.7622,-74.8179,-124.055,0,-115.025	1/2:39:0,15,24:0:0:15,24:534,860:-114.019,-70.4971,-65.9817,-43.8788,0,-36.6541	1/1:24:0,24,0:0:0:24,0:855,0:-77.271,-7.22472,0,-77.271,-7.22472,-77.271	1/1:61:0,56,5:0:0:56,5:1995,180:-179.45,-16.8577,0,-164.763,-1.81077,-163.257	1/2:11:0,10,1:0:0:10,1:339,36:-30.7662,-3.29724,-0.286945,-27.8269,0,-27.5258	1/2:134:0,75,59:0:0:75,59:2628,2108:-385.501,-171.678,-149.101,-214.118,0,-196.357	1/1:85:0,85,0:0:0:85,0:3013,0:-271.402,-25.5876,0,-271.402,-25.5876,-271.402	1/1:14:0,14,0:0:0:14,0:484,0:-43.8871,-4.21442,0,-43.8871,-4.21442,-43.8871	1/2:71:0,39,32:0:0:39,32:1378,1148:-206.218,-93.9969,-82.2567,-112.577,0,-102.944	1/1:38:0,38,0:0:0:38,0:1349,0:-121.71,-11.4391,0,-121.71,-11.4391,-121.71	1/1:69:0,69,0:0:0:69,0:2423,0:-218.325,-20.7711,0,-218.325,-20.7711,-218.325	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:8:0,8,0:0:0:8,0:286,0:-26.0855,-2.40824,0,-26.0855,-2.40824,-26.0855	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:66:0,66,0:0:0:66,0:2317,0:-208.707,-19.868,0,-208.707,-19.868,-208.707	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:106:0,49,57:0:0:49,57:1718,2044:-306.871,-167.073,-152.323,-140.153,0,-122.994	1/1:116:0,116,0:0:0:116,0:4086,0:-367.928,-34.9195,0,-367.928,-34.9195,-367.928	1/2:33:0,20,13:0:0:20,13:703,468:-95.7628,-38.5463,-32.5257,-57.573,0,-53.6596	.:.:.:.:.:.:.:.	1/2:24:0,11,13:0:0:11,13:382,468:-69.595,-38.5463,-35.2349,-31.4017,0,-27.4884	1/1:23:0,23,0:0:0:23,0:822,0:-74.2168,-6.92369,0,-74.2168,-6.92369,-74.2168	1/1:57:0,57,0:0:0:57,0:2009,0:-181.023,-17.1587,0,-181.023,-17.1587,-181.023	1/1:20:0,20,0:0:0:20,0:710,0:-64.2257,-6.0206,0,-64.2257,-6.0206,-64.2257	1/1:38:0,38,0:0:0:38,0:1361,0:-122.791,-11.4391,0,-122.791,-11.4391,-122.791	1/1:84:0,84,0:0:0:84,0:2913,0:-262.404,-25.2865,0,-262.404,-25.2865,-262.404	1/1:43:0,43,0:0:0:43,0:1516,0:-136.731,-12.9443,0,-136.731,-12.9443,-136.731	1/2:72:1,39,32:1:36:39,32:1368,1152:-202.081,-91.0599,-82.2572,-108.38,0,-101.685	1/2:40:0,9,30:0:0:9,30:314,1072:-112.936,-87.3995,-84.6902,-25.5287,0,-16.4978	1/2:38:0,20,18:0:0:20,18:718,644:-111.442,-52.8721,-46.8515,-58.9278,0,-53.5092	1/2:64:0,29,35:0:0:29,35:1000,1256:-184.037,-102.809,-94.0794,-81.5784,0,-71.0423	1/1:8:0,8,0:0:0:8,0:274,0:-24.9924,-2.40824,0,-24.9924,-2.40824,-24.9924	1/1:50:0,50,0:0:0:50,0:1785,0:-160.933,-15.0515,0,-160.933,-15.0515,-160.933	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:9:0,9,0:0:0:9,0:316,0:-28.7783,-2.70927,0,-28.7783,-2.70927,-28.7783	1/1:47:0,47,0:0:0:47,0:1641,0:-147.976,-14.1484,0,-147.976,-14.1484,-147.976	1/1:8:0,8,0:0:0:8,0:288,0:-26.265,-2.40824,0,-26.265,-2.40824,-26.265	1/1:143:0,143,0:0:0:143,0:5029,0:-452.754,-43.0473,0,-452.754,-43.0473,-452.754	1/2:7:0,2,5:0:0:2,5:63,180:-20.1003,-15.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chr01	31888589	.	T	C	15968.4	PASS	AB=0.434745;ABP=89.4464;AC=39;AF=0.207447;AN=188;AO=1020;CIGAR=1X;DP=5640;DPB=5640;DPRA=1.11145;EPP=2209.23;EPPR=9998.33;GTI=2;LEN=1;MEANALT=1.02381;MQM=59.9578;MQMR=59.9944;NS=94;NUMALT=1;ODDS=0.4882;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36419;QR=165383;RO=4619;RPL=1;RPP=2209.23;RPPR=9998.33;RPR=1019;RUN=1;SAF=1020;SAP=2217.91;SAR=0;SRF=4619;SRP=10033;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965	0/1:20:6,14:6:212:14:490:-38.4105,0,-13.4042	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/0:140:140,0:140:4982:0:0:0,-42.1442,-448.526	0/1:59:33,26:33:1175:26:922:-65.5363,0,-88.2962	0/1:29:9,20:9:324:20:720:-56.3989,0,-20.776	0/1:68:24,44:24:864:44:1561:-120.31,0,-57.6125	0/0:88:88,0:88:3139:0:0:0,-26.4906,-282.736	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.728	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:33:21,12:21:752:12:428:-28.9248,0,-58.0723	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:23:15,8:15:540:8:288:-19.3437,0,-42.0128	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:126:75,51:75:2692:51:1821:-126.239,0,-204.594	0/1:80:46,33:46:1652:33:1167:-81.1954,0,-124.827	0/1:103:50,53:50:1787:53:1904:-140.632,0,-130.106	0/0:99:99,0:99:3564:0:0:0,-29.802,-320.966	0/0:104:103,1:103:3696:1:36:0,-27.7088,-329.016	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.889	0/1:211:128,83:128:4587:83:2963:-203.386,0,-349.476	0/0:195:195,0:195:7005:0:0:0,-58.7008,-630.508	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:146:70,76:70:2507:76:2728:-200.956,0,-181.931	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/0:106:106,0:106:3772:0:0:0,-31.9092,-339.679	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/1:61:37,24:37:1328:24:860:-59.359,0,-101.459	0/0:125:125,0:125:4475:0:0:0,-37.6287,-402.919	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:63:33,30:33:1184:30:1064:-77.1068,0,-87.9034	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:121:120,1:120:4261:1:36:0,-32.8264,-380.069	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:133:133,0:133:4753:0:0:0,-40.037,-427.927	0/0:106:104,2:104:3713:2:72:0,-25.0725,-327.534	0/1:87:41,46:41:1457:46:1656:-123.139,0,-105.234	0/1:69:46,23:46:1648:23:828:-54.073,0,-127.837	0/1:43:24,19:24:856:19:680:-48.5849,0,-64.4168	0/1:130:62,68:62:2220:68:2416:-178.562,0,-160.931	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.886	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:70:70,0:70:2511:0:0:0,-21.0721,-226.241	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:96:96,0:96:3427:0:0:0,-28.8989,-308.644	0/1:148:78,70:78:2800:70:2492:-179.979,0,-207.687	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:125:125,0:125:4496:0:0:0,-37.6287,-404.806	0/1:105:62,43:62:2203:43:1536:-106.924,0,-166.927	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:106:81,25:81:2916:25:892:-48.6905,0,-230.765	0/1:32:27,5:27:968:5:180:-6.91911,0,-77.8044	0/0:148:148,0:148:5302:0:0:0,-44.5524,-477.313	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:58:48,10:48:1716:10:360:-15.2846,0,-137.266	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/1:39:9,30:9:324:30:1076:-85.4127,0,-17.7657	0/1:57:39,18:39:1404:18:635:-40.3183,0,-109.501	0/1:199:114,85:114:4085:85:3020:-212.121,0,-307.929	0/1:41:18,23:18:648:23:824:-62.1407,0,-46.3097	0/1:17:13,4:13:468:4:144:-8.19611,0,-37.3421	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:41:31,10:31:1116:10:360:-20.4021,0,-88.4095	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2796	0/1:14:6,8:6:212:8:284:-21.6889,0,-15.2104	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383
chr01	31891617	.	G	T	145690	PASS	AB=0.486768;ABP=9.73396;AC=146;AF=0.784946;AN=186;AO=7109;CIGAR=1X;DP=9391;DPB=9391;DPRA=34.0145;EPP=15440;EPPR=4947.46;GTI=4;LEN=1;MEANALT=1.01087;MQM=48.3483;MQMR=51.3735;NS=93;NUMALT=1;ODDS=1.45534;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251245;QR=78302;RO=2281;RPL=0;RPP=15440;RPPR=4947.46;RPR=7109;RUN=1;SAF=0;SAP=15440;SAR=7109;SRF=0;SRP=4956.14;SRR=2281;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1305:-116.478,-11.1381,0	0/1:131:63,68:63:2158:68:2405:-174.707,0,-154.418	1/1:133:0,133:0:0:133:4747:-423.024,-40.037,0	1/1:267:0,267:0:0:267:9488:-846.303,-80.375,0	0/1:59:29,30:29:1002:30:1063:-77.271,0,-72.3038	0/1:30:16,14:16:568:14:500:-35.9132,0,-41.8433	0/1:158:77,81:77:2690:81:2855:-206.745,0,-193.956	1/1:153:0,153:0:0:153:5372:-477.356,-46.0576,0	1/1:66:0,66:0:0:66:2324:-207.326,-19.868,0	1/1:121:0,120:0:0:120:4231:-378.508,-36.1236,0	1/1:31:0,31:0:0:31:1091:-97.6871,-9.33193,0	1/1:63:1,62:1:36:62:2196:-192.788,-15.3666,0	0/1:52:29,23:29:965:23:792:-54.3698,0,-70.9887	0/1:39:16,23:16:514:23:808:-60.4581,0,-34.6326	0/1:61:32,29:32:1093:29:1024:-73.592,0,-79.3991	1/1:57:0,57:0:0:57:1995:-177.324,-17.1587,0	1/1:53:0,53:0:0:53:1840:-163.772,-15.9546,0	0/1:58:24,34:24:809:34:1216:-91.5704,0,-54.6838	0/1:15:8,7:8:267:7:240:-17.3007,0,-19.6787	0/1:227:120,107:120:4152:107:3798:-271.632,0,-302.904	0/1:124:47,77:47:1619:77:2698:-202.478,0,-107.733	0/1:130:80,50:80:2827:50:1770:-119.599,0,-215.042	1/1:84:0,84:0:0:84:2981:-266.65,-25.2865,0	1/1:158:5,153:5:180:153:5432:-465.932,-31.2987,0	1/1:61:0,61:0:0:61:2149:-191.752,-18.3628,0	0/1:373:192,181:192:6573:181:6428:-462.391,0,-477.534	1/1:199:0,199:0:0:199:7014:-623.702,-59.905,0	1/1:31:0,31:0:0:31:1069:-95.7975,-9.33193,0	0/1:399:221,178:221:7632:178:6298:-441.67,0,-564.97	1/1:142:0,142:0:0:142:4998:-445.009,-42.7463,0	1/1:116:0,116:0:0:116:4077:-363.866,-34.9195,0	1/1:3:0,3:0:0:3:108:-10.0056,-0.90309,0	1/1:14:0,14:0:0:14:496:-44.5438,-4.21442,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.81784	1/1:6:0,6:0:0:6:208:-18.9515,-1.80618,0	1/1:3:0,3:0:0:3:108:-9.9396,-0.90309,0	0/1:174:84,90:84:2804:90:3153:-229.179,0,-199.48	1/1:203:0,203:0:0:203:7227:-643.429,-61.1091,0	0/1:55:32,23:32:1034:23:782:-52.8166,0,-76.4817	0/1:5:2,3:2:57:3:104:-7.80786,0,-3.89334	0/1:159:84,75:84:2877:75:2651:-188.92,0,-209.544	1/1:39:0,39:0:0:39:1392:-124.45,-11.7402,0	1/1:79:0,79:0:0:79:2767:-246.848,-23.7814,0	1/1:49:0,49:0:0:49:1716:-153.927,-14.7505,0	1/1:48:0,48:0:0:48:1692:-150.878,-14.4494,0	1/1:70:0,70:0:0:70:2465:-219.499,-21.0721,0	1/1:132:0,132:0:0:132:4688:-417.732,-39.736,0	0/1:169:81,88:81:2785:88:3084:-224.308,0,-199.098	0/1:116:62,54:62:2141:54:1891:-132.271,0,-156.554	0/1:149:83,66:83:2867:66:2356:-164.573,0,-212.409	0/1:240:131,109:131:4549:109:3835:-270.967,0,-336.324	1/1:9:1,8:1:27:8:284:-22.981,-0.0106384,0	1/1:190:0,190:0:0:190:6747:-600.088,-57.1957,0	1/1:72:0,72:0:0:72:2547:-228.511,-21.6742,0	1/1:15:0,15:0:0:15:540:-48.4602,-4.51545,0	1/1:143:0,143:0:0:143:5053:-449.328,-43.0473,0	1/1:52:0,52:0:0:52:1838:-164.152,-15.6536,0	.:.:.:.:.:.:.:.	0/1:28:11,17:11:388:17:604:-45.8236,0,-26.777	1/1:65:0,65:0:0:65:2320:-206.372,-19.567,0	1/1:116:0,116:0:0:116:4116:-367.938,-34.9195,0	1/1:3:0,3:0:0:3:104:-9.66866,-0.90309,0	1/1:329:0,329:0:0:329:11657:-1043.24,-99.0389,0	0/1:259:121,138:121:4224:138:4896:-360.194,0,-300.632	1/1:64:0,64:0:0:64:2272:-202.589,-19.2659,0	1/1:95:0,95:0:0:95:3365:-301.39,-28.5979,0	1/1:177:2,175:2:53:175:6216:-550.493,-48.2517,0	0/1:151:91,60:91:3105:60:2138:-144.825,0,-233.049	1/1:16:0,16:0:0:16:548:-49.2007,-4.81648,0	1/1:102:0,102:0:0:102:3637:-323.896,-30.7051,0	1/1:83:0,83:0:0:83:2891:-259.087,-24.9855,0	1/1:26:0,26:0:0:26:928:-83.4278,-7.82678,0	0/1:83:46,37:46:1554:37:1308:-91.0305,0,-114.261	0/1:66:36,30:36:1248:30:1067:-75.1943,0,-91.4876	1/1:120:0,120:0:0:120:4258:-373.999,-36.1236,0	1/1:250:0,250:0:0:250:8901:-795.433,-75.2575,0	0/1:53:25,28:25:868:28:977:-71.6555,0,-62.2396	1/1:156:0,156:0:0:156:5529:-492.228,-46.9607,0	1/1:9:0,9:0:0:9:315:-28.1461,-2.70927,0	0/1:123:53,70:53:1827:70:2499:-185.831,0,-125.377	0/1:102:52,50:52:1774:50:1775:-128.299,0,-127.978	0/1:208:102,106:102:3494:106:3751:-272.663,0,-250.36	0/1:105:55,50:55:1872:50:1729:-121.551,0,-136.361	0/1:63:31,32:31:1035:32:1118:-79.995,0,-74.2628	1/1:75:0,75:0:0:75:2639:-236.333,-22.5773,0	0/1:112:62,50:62:2141:50:1724:-120.538,0,-158.136	0/1:44:17,27:17:573:27:940:-70.7435,0,-38.4118	1/1:68:0,68:0:0:68:2392:-212.574,-20.47,0	1/1:60:0,60:0:0:60:2099:-187.145,-18.0618,0	0/1:17:8,9:8:272:9:311:-22.9712,0,-19.5347	0/1:50:25,25:25:840:25:868:-62.8107,0,-60.6212	0/1:34:21,13:21:700:13:443:-28.7705,0,-52.9284	1/1:167:0,167:0:0:167:5932:-527.068,-50.272,0	1/1:87:0,87:0:0:87:3042:-271.191,-26.1896,0
chr01	31957139	.	A	G	338660	PASS	AB=0.507443;ABP=6.69539;AC=149;AF=0.792553;AN=188;AO=12785;CIGAR=1X;DP=16586;DPB=16586;DPRA=0;EPP=27765.3;EPPR=8248.09;GTI=1;LEN=1;MEANALT=1.04255;MQM=50.9324;MQMR=58.2652;NS=94;NUMALT=1;ODDS=1.89309;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=452700;QR=135050;RO=3797;RPL=6015;RPP=99.8264;RPPR=153.514;RPR=6770;RUN=1;SAF=6015;SAP=99.8264;SAR=6770;SRF=1642;SRP=153.514;SRR=2155;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:97:0,97:0:0:97:3453:-308.995,-29.1999,0	0/1:263:142,121:142:5068:121:4300:-297.583,0,-376.363	1/1:276:0,276:0:0:276:9770:-870.483,-83.0843,0	1/1:403:0,403:0:0:403:14306:-1268.41,-121.315,0	0/1:78:38,40:38:1360:40:1440:-104.709,0,-99.1848	0/1:102:32,70:32:1124:70:2516:-190.849,0,-70.6109	0/1:250:127,123:127:4486:123:4383:-313.323,0,-328.216	1/1:214:1,213:1:36:213:7460:-655.576,-60.8221,0	1/1:190:0,190:0:0:190:6761:-600.163,-57.1957,0	1/1:200:0,200:0:0:200:7086:-627.59,-60.206,0	1/1:151:0,151:0:0:151:5336:-474.138,-45.4555,0	1/1:167:0,167:0:0:167:5912:-525.538,-50.272,0	0/1:157:74,83:74:2602:83:2913:-211.606,0,-187.034	0/1:136:69,67:69:2423:67:2356:-168.007,0,-177.253	0/1:152:73,79:73:2608:79:2778:-200.537,0,-189.086	1/1:147:0,147:0:0:147:5197:-462.837,-44.2514,0	1/1:136:0,136:0:0:136:4797:-421.622,-40.9401,0	0/1:112:66,46:66:2344:46:1644:-110.524,0,-177.425	0/1:58:26,32:26:910:32:1131:-82.963,0,-64.6568	0/1:244:132,112:132:4727:112:3951:-276.736,0,-351.581	0/1:269:142,127:142:5104:127:4520:-320.895,0,-378.001	0/1:103:57,46:57:2044:46:1616:-114.305,0,-153.216	1/1:149:0,149:0:0:149:5269:-468.503,-44.8535,0	1/1:198:10,188:10:360:188:6639:-557.101,-26.9544,0	1/1:113:0,113:0:0:113:4017:-355.377,-34.0164,0	0/1:531:246,285:246:8798:285:10071:-743.723,0,-631.801	1/1:258:0,258:0:0:258:9171:-814.327,-77.6657,0	1/1:76:0,76:0:0:76:2710:-239.586,-22.8783,0	0/1:358:174,184:174:6215:184:6518:-477.614,0,-451.518	1/1:378:2,376:2:72:376:13226:-1158.81,-106.953,0	1/1:234:0,234:0:0:234:8263:-732.216,-70.441,0	1/1:13:0,13:0:0:13:460:-41.2139,-3.91339,0	1/1:30:0,30:0:0:30:1071:-95.4988,-9.0309,0	0/1:9:6,3:6:212:3:108:-7.11538,0,-16.6564	1/1:14:0,14:0:0:14:496:-44.5325,-4.21442,0	1/1:33:0,33:0:0:33:1171:-105.083,-9.93399,0	0/1:393:182,211:182:6475:211:7429:-547.311,0,-464.156	1/1:206:0,206:0:0:206:7337:-649.155,-62.0122,0	0/1:132:62,70:62:2165:70:2462:-177.584,0,-155.259	0/1:5:4,1:4:144:1:36:-1.99755,0,-11.8085	0/1:268:127,141:127:4519:141:5009:-361.513,0,-325.865	1/1:67:0,67:0:0:67:2359:-209.744,-20.169,0	1/1:243:0,243:0:0:243:8587:-762.983,-73.1503,0	1/1:146:0,146:0:0:146:5171:-456.034,-43.9504,0	1/1:143:0,143:0:0:143:5046:-447.339,-43.0473,0	1/1:209:0,209:0:0:209:7420:-666.429,-62.9153,0	1/1:212:2,209:2:72:209:7426:-647.306,-57.0373,0	0/1:308:119,189:119:4203:189:6681:-499.09,0,-285.397	0/1:216:88,128:88:3152:128:4550:-337.343,0,-218.639	0/1:192:84,108:84:3000:108:3880:-285.386,0,-212.289	0/1:241:110,131:110:3896:131:4686:-348.637,0,-278.279	1/1:7:0,7:0:0:7:248:-22.402,-2.10721,0	1/1:320:2,317:2:72:317:11186:-981.945,-89.5497,0	1/1:113:0,113:0:0:113:3994:-358.683,-34.0164,0	1/1:26:0,26:0:0:26:932:-83.3268,-7.82678,0	1/1:213:0,213:0:0:213:7575:-669.841,-64.1194,0	1/1:68:0,68:0:0:68:2343:-209.736,-20.47,0	1/1:14:0,14:0:0:14:500:-45.3328,-4.21442,0	0/1:47:27,20:27:943:20:716:-50.5945,0,-70.9484	1/1:169:0,169:0:0:169:6033:-535.205,-50.8741,0	1/1:171:0,171:0:0:171:6034:-534.416,-51.4761,0	1/1:20:0,20:0:0:20:702:-63.112,-6.0206,0	1/1:360:0,360:0:0:360:12871:-1155.47,-108.371,0	0/1:315:142,173:142:5071:173:6104:-445.059,0,-361.3	1/1:156:0,156:0:0:156:5524:-489.476,-46.9607,0	1/1:113:0,113:0:0:113:3958:-349.629,-34.0164,0	1/1:290:3,287:3:104:287:10173:-892.086,-77.5997,0	0/1:300:197,103:197:7035:103:3674:-236.549,0,-542.568	1/1:70:1,69:1:36:69:2466:-215.571,-17.4738,0	1/1:142:0,142:0:0:142:5043:-448.296,-42.7463,0	1/1:154:0,154:0:0:154:5451:-489.351,-46.3586,0	1/1:40:0,40:0:0:40:1421:-126.14,-12.0412,0	0/1:209:99,110:99:3523:110:3877:-282.062,0,-254.192	0/1:173:99,74:99:3517:74:2607:-179.463,0,-264.589	1/1:264:0,264:0:0:264:9361:-832.995,-79.4719,0	1/1:329:0,329:0:0:329:11744:-1040.17,-99.0389,0	0/1:175:74,101:74:2652:101:3575:-264.536,0,-186.184	1/1:241:5,235:5:176:235:8303:-718.462,-56.4196,0	1/1:13:0,13:0:0:13:459:-41.3718,-3.91339,0	0/1:249:110,139:110:3925:139:4913:-358.841,0,-277.938	0/1:146:72,74:72:2527:74:2594:-186.982,0,-183.636	0/1:372:189,183:189:6753:183:6492:-463.781,0,-495.159	0/1:166:99,67:99:3452:67:2364:-159.153,0,-260.042	0/1:129:57,72:57:2010:72:2530:-186.51,0,-142.178	1/1:156:0,156:0:0:156:5562:-491.297,-46.9607,0	0/1:292:144,148:144:5081:148:5146:-368.648,0,-369.14	0/1:67:34,32:34:1212:32:1125:-77.2961,0,-88.894	1/1:148:0,148:0:0:148:5215:-460.371,-44.5524,0	1/1:173:0,173:0:0:173:6133:-543.551,-52.0782,0	0/1:100:49,51:49:1727:51:1796:-129.654,0,-125.491	0/1:180:88,92:88:3152:92:3247:-233.218,0,-229.315	0/1:161:111,50:111:3963:50:1755:-107,0,-307.985	1/1:223:0,223:0:0:223:7850:-697.253,-67.1297,0	1/1:232:0,232:0:0:232:8209:-728.635,-69.839,0
chr01	31960697	.	TGCCA	AGCCA,CGCCA	191805	PASS	AB=0.470089,0.519312;ABP=36.0048,16.7653;AC=148,40;AF=0.787234,0.212766;AN=188;AO=6735,2220;CIGAR=1X4M,1X4M;DP=9058;DPB=9058;DPRA=97.3871,1.3714;EPP=14463.3,4728.61;EPPR=26.8965;GTI=3;LEN=1,1;MEANALT=2.36559,2.89583;MQM=59.9872,59.9847;MQMR=59.8182;NS=94;NUMALT=2;ODDS=0.976022;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=237990,78445;QR=294;RO=11;RPL=1,0;RPP=14619.2,4823.68;RPPR=26.8965;RPR=6734,2220;RUN=1,1;SAF=20,11;SAP=14454.7,4728.61;SAR=6715,2209;SRF=0;SRP=26.8965;SRR=11;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,48,0:0:0:48,0:1691,0:-152.18,-14.4494,0,-152.18,-14.4494,-152.18	1/2:49:0,20,28:0:0:20,28:720,973:-137.845,-79.0918,-73.0712,-58.7483,0,-50.3195	1/1:149:0,148,0:0:0:148,0:5239,0:-471.428,-44.5524,0,-471.428,-44.5524,-471.428	1/1:152:0,152,0:0:0:152,0:5311,0:-478.131,-45.7566,0,-478.131,-45.7566,-478.131	1/2:57:0,35,22:0:0:35,22:1247,764:-164.102,-62.4541,-51.918,-101.998,0,-95.3754	1/2:48:0,22,26:0:0:22,26:754,936:-137.933,-76.7327,-70.11,-61.5506,0,-53.7239	1/2:100:0,28,67:0:0:28,67:995,2372:-274.338,-193.256,-184.828,-81.1201,0,-60.9511	1/1:111:0,107,2:0:0:107,2:3788,72:-340.805,-32.2102,0,-334.93,-26.2873,-334.328	1/1:127:0,126,0:0:0:126,0:4466,0:-401.813,-37.9298,0,-401.813,-37.9298,-401.813	1/1:94:0,93,0:0:0:93,0:3302,0:-297.136,-27.9958,0,-297.136,-27.9958,-297.136	1/1:74:0,73,0:0:0:73,0:2591,0:-233.188,-21.9752,0,-233.188,-21.9752,-233.188	1/1:159:1,158,0:1:21:158,0:5535,0:-496.181,-45.7638,0,-496.482,-47.5627,-498.07	1/2:106:0,52,53:0:0:52,53:1833,1888:-303.174,-153.933,-138.279,-149.284,0,-133.33	1/2:92:0,45,45:0:0:45,45:1601,1603:-261.223,-130.744,-117.198,-130.564,0,-117.018	1/2:102:1,50,51:1:22:50,51:1771,1790:-288.097,-144.129,-130.754,-142.722,0,-129.046	1/1:98:0,97,0:0:0:97,0:3402,0:-306.047,-29.1999,0,-306.047,-29.1999,-306.047	1/1:61:0,60,0:0:0:60,0:2128,0:-191.478,-18.0618,0,-191.478,-18.0618,-191.478	1/2:22:0,12,10:0:0:12,10:404,356:-62.0932,-29.3709,-25.7586,-33.0693,0,-30.059	1/2:30:0,23,7:0:0:23,7:820,248:-87.393,-20.557,-13.6333,-67.1906,0,-65.0834	1/2:260:0,117,142:0:0:117,142:4167,5054:-751.539,-411.901,-376.681,-339.634,0,-296.888	1/2:141:0,84,56:0:0:84,56:2958,1999:-403.864,-163.055,-137.768,-240.893,0,-224.036	1/2:118:1,43,74:1:22:43,74:1540,2605:-335.815,-210.523,-199.256,-124.05,0,-103.449	1/1:133:0,131,2:0:0:131,2:4653,63:-418.619,-39.4349,0,-413.553,-34.0538,-412.951	1/1:58:0,56,2:0:0:56,2:2000,72:-179.914,-16.8577,0,-174.039,-10.623,-173.437	1/1:100:0,99,1:0:0:99,1:3492,36:-314.13,-29.802,0,-311.193,-26.5047,-310.892	1/2:208:1,96,110:1:24:96,110:3409,3886:-592.203,-314.732,-287.691,-276.035,0,-244.78	1/1:188:1,184,0:1:30:184,0:6512,0:-583.161,-52.9934,0,-583.462,-55.3895,-585.86	1/1:51:0,49,0:0:0:49,0:1735,0:-156.137,-14.7505,0,-156.137,-14.7505,-156.137	1/2:318:0,149,166:0:0:149,166:5283,5871:-908.677,-478.276,-433.422,-430.496,0,-380.525	1/1:97:0,96,1:0:0:96,1:3414,36:-307.115,-28.8989,0,-304.177,-25.6016,-303.876	1/1:103:1,101,0:1:22:101,0:3567,0:-319.037,-28.7251,0,-319.338,-30.404,-321.016	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:21:0,21,0:0:0:21,0:739,0:-66.8324,-6.32163,0,-66.8324,-6.32163,-66.8324	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:10:0,9,0:0:0:9,0:301,0:-27.1373,-2.70927,0,-27.1373,-2.70927,-27.1373	1/1:15:0,15,0:0:0:15,0:509,0:-46.1312,-4.51545,0,-46.1312,-4.51545,-46.1312	1/2:243:0,107,136:0:0:107,136:3756,4788:-695.821,-390.14,-357.93,-306.032,0,-265.092	1/1:152:0,148,1:0:0:148,1:5246,36:-472.009,-44.5524,0,-469.071,-41.585,-468.77	1/2:41:0,21,20:0:0:21,20:752,697:-118.362,-57.0301,-50.7084,-61.6846,0,-55.664	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:127:0,72,53:0:0:72,53:2545,1880:-360.446,-153.174,-131.5,-207.276,0,-191.322	1/1:38:0,38,0:0:0:38,0:1340,0:-120.9,-11.4391,0,-120.9,-11.4391,-120.9	1/1:132:0,130,0:0:0:130,0:4572,0:-411.29,-39.1339,0,-411.29,-39.1339,-411.29	1/1:81:0,81,0:0:0:81,0:2863,0:-257.909,-24.3834,0,-257.909,-24.3834,-257.909	1/1:61:0,61,0:0:0:61,0:2118,0:-190.781,-18.3628,0,-190.781,-18.3628,-190.781	1/1:111:0,108,0:0:0:108,0:3808,0:-342.655,-32.5112,0,-342.655,-32.5112,-342.655	1/1:145:1,142,0:1:30:142,0:5000,0:-447.198,-40.3227,0,-447.499,-42.7463,-449.897	1/2:136:0,56,80:0:0:56,80:1978,2827:-391.396,-230.316,-213.458,-161.433,0,-137.351	1/2:102:0,47,54:0:0:47,54:1692,1888:-291.754,-153.689,-139.541,-138.167,0,-121.911	1/2:97:0,57,40:0:0:57,40:2044,1432:-283.851,-117.136,-99.9777,-167.073,0,-155.032	1/2:153:0,75,74:0:0:75,74:2645,2599:-426.979,-211.612,-189.035,-215.448,0,-193.171	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:105:0,104,0:0:0:104,0:3702,0:-333.023,-31.3071,0,-333.023,-31.3071,-333.023	1/1:69:0,68,0:0:0:68,0:2418,0:-217.516,-20.47,0,-217.516,-20.47,-217.516	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:161:0,158,0:0:0:158,0:5544,0:-498.779,-47.5627,0,-498.779,-47.5627,-498.779	1/1:64:0,64,0:0:0:64,0:22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chr01	32285919	.	G	A	80931.3	PASS	AB=0.388546;ABP=247.933;AC=146;AF=0.776596;AN=188;AO=3179;CIGAR=1X;DP=4621;DPB=4621;DPRA=49.6774;EPP=1044.84;EPPR=150.642;GTI=5;LEN=1;MEANALT=1.01075;MQM=55.3712;MQMR=59.8695;NS=94;NUMALT=1;ODDS=0.726799;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112202;QR=51020;RO=1441;RPL=0;RPP=6906.12;RPPR=3123.42;RPR=3179;RUN=1;SAF=2207;SAP=1044.84;SAR=972;SRF=878;SRP=152.534;SRR=563;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:140:-12.9419,-1.20412,0	0/0:25:24,1:24:841:1:36:0,-3.92848,-72.037	1/1:13:0,13:0:0:13:456:-41.3644,-3.91339,0	1/1:40:0,40:0:0:40:1405:-126.023,-12.0412,0	0/1:29:17,12:17:600:12:428:-30.1104,0,-45.5993	0/1:11:5,6:5:180:6:208:-15.7433,0,-13.2407	0/1:38:27,11:27:956:11:392:-24.1083,0,-74.8976	1/1:27:0,27:0:0:27:964:-86.8447,-8.12781,0	1/1:14:0,14:0:0:14:500:-45.3239,-4.21442,0	1/1:19:0,19:0:0:19:668:-60.0662,-5.71957,0	1/1:85:0,85:0:0:85:3022:-270.764,-25.5876,0	1/1:44:0,44:0:0:44:1540:-138.554,-13.2453,0	0/1:50:33,17:33:1176:17:612:-40.3427,0,-91.0954	0/1:94:50,44:50:1773:44:1576:-112.815,0,-131.554	0/1:83:65,18:65:2288:18:640:-32.8611,0,-181.194	1/1:28:0,28:0:0:28:1008:-90.3864,-8.42884,0	1/1:19:1,18:1:36:18:644:-54.6728,-2.1213,0	0/1:62:34,28:34:1224:28:996:-71.1643,0,-91.8032	0/1:29:22,7:22:777:7:252:-14.2927,0,-61.5196	0/1:53:28,25:28:976:25:883:-63.6995,0,-72.1947	0/1:99:45,54:45:1604:54:1920:-142.686,0,-114.741	0/0:19:18,1:18:627:1:36:0,-2.13034,-53.1652	1/1:8:0,8:0:0:8:284:-24.9057,-2.40824,0	0/1:14:2,12:2:72:12:416:-33.5413,0,-2.6223	1/1:16:1,15:1:36:15:528:-44.0192,-1.21992,0	0/1:73:56,17:56:2012:17:604:-32.5211,0,-159.378	1/1:59:0,59:0:0:59:2089:-187.885,-17.7608,0	1/1:29:0,29:0:0:29:1036:-93.2213,-8.72987,0	0/1:52:37,15:37:1288:15:536:-31.9749,0,-100.564	1/1:39:0,39:0:0:39:1388:-124.287,-11.7402,0	1/1:9:0,9:0:0:9:324:-29.4726,-2.70927,0	1/1:93:2,91:2:72:91:3242:-283.736,-21.1591,0	1/1:27:0,27:0:0:27:952:-85.8395,-8.12781,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:110:0,110:0:0:110:3861:-347.205,-33.1133,0	1/1:54:0,54:0:0:54:1927:-173.553,-16.2556,0	0/1:246:140,106:140:4974:106:3796:-266.877,0,-373.758	0/1:25:11,14:11:388:14:496:-37.4153,0,-27.7316	0/1:42:13,29:13:464:29:1028:-80.1489,0,-29.4542	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:97:45,52:45:1604:52:1849:-136.921,0,-115.258	1/1:56:0,56:0:0:56:1988:-179.042,-16.8577,0	1/1:57:1,56:1:36:56:1974:-173.544,-13.5621,0	1/1:72:0,72:0:0:72:2495:-223.927,-21.6742,0	1/1:81:0,81:0:0:81:2813:-250.844,-24.3834,0	1/1:12:0,12:0:0:12:428:-38.7905,-3.61236,0	1/1:5:0,5:0:0:5:176:-16.1809,-1.50515,0	0/1:67:36,31:36:1288:31:1099:-78.4175,0,-96.0513	0/1:31:18,13:18:644:13:434:-29.9082,0,-48.9587	0/1:36:30,6:30:1072:6:197:-7.18938,0,-85.9546	0/1:45:26,19:26:919:19:648:-45.0206,0,-69.4798	1/1:60:0,60:0:0:60:2059:-184.49,-18.0618,0	1/1:22:0,22:0:0:22:776:-70.1443,-6.62266,0	1/1:7:0,7:0:0:7:241:-21.978,-2.10721,0	1/1:27:0,27:0:0:27:929:-83.8251,-8.12781,0	1/1:79:1,78:1:36:78:2706:-239.53,-20.1831,0	1/1:11:0,11:0:0:11:375:-34.0143,-3.31133,0	1/1:63:0,63:0:0:63:2191:-197.25,-18.9649,0	1/1:72:1,71:1:36:71:2463:-218.054,-18.0759,0	1/1:21:0,21:0:0:21:740:-66.8603,-6.32163,0	1/1:48:0,48:0:0:48:1698:-152.344,-14.4494,0	1/1:8:0,8:0:0:8:280:-25.5065,-2.40824,0	1/1:41:0,41:0:0:41:1413:-126.907,-12.3422,0	0/1:65:31,34:31:1108:34:1193:-87.5105,0,-80.4636	1/1:21:0,21:0:0:21:752:-67.5318,-6.32163,0	1/1:7:0,7:0:0:7:240:-21.8691,-2.10721,0	1/1:63:1,62:1:36:62:2224:-196.175,-15.3666,0	0/1:57:43,14:43:1508:14:485:-26.4896,0,-118.851	1/1:122:1,121:1:36:121:4322:-383.951,-33.1274,0	1/1:16:0,16:0:0:16:564:-51.0082,-4.81648,0	1/1:93:0,93:0:0:93:3294:-295.437,-27.9958,0	1/1:83:0,83:0:0:83:2929:-263.187,-24.9855,0	0/1:9:6,3:6:212:3:108:-7.36308,0,-16.7155	0/1:17:15,2:15:540:2:72:-1.7173,0,-43.819	1/1:55:0,55:0:0:55:1902:-171.098,-16.5567,0	1/1:39:1,38:1:21:38:1339:-118.379,-9.64022,0	0/1:34:26,8:26:913:8:284:-15.6615,0,-72.249	1/1:34:1,33:1:36:33:1172:-102.063,-6.63675,0	1/1:55:0,55:0:0:55:1899:-170.967,-16.5567,0	0/1:56:37,19:37:1320:19:676:-44.2484,0,-102.243	0/1:12:7,5:7:252:5:168:-11.7525,0,-19.4166	0/1:72:44,28:44:1561:28:984:-66.2543,0,-119.105	0/1:89:65,23:65:2289:23:811:-46.4184,0,-179.565	0/1:98:56,42:56:1969:42:1492:-104.13,0,-147.982	1/1:112:0,112:0:0:112:3981:-357.298,-33.7154,0	0/1:200:131,69:131:4608:69:2455:-159.844,0,-354.665	0/1:37:21,16:21:752:16:572:-40.6613,0,-56.8681	1/1:48:0,48:0:0:48:1703:-153.403,-14.4494,0	1/1:45:0,45:0:0:45:1608:-144.347,-13.5464,0	0/1:55:23,32:23:820:32:1132:-85.4334,0,-57.5659	0/1:102:70,32:70:2485:32:1148:-72.766,0,-192.88	0/1:91:72,19:72:2519:19:676:-33.5415,0,-199.568	1/1:8:0,8:0:0:8:284:-25.8615,-2.40824,0	1/1:25:0,25:0:0:25:892:-80.5059,-7.52575,0
chr01	32285942	.	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chr01	32380957	.	T	C	29693	PASS	AB=0.552171;ABP=75.9678;AC=39;AF=0.209677;AN=186;AO=1715;CIGAR=1X;DP=6155;DPB=6155;DPRA=1.38963;EPP=3649.32;EPPR=9546.87;GTI=6;LEN=1;MEANALT=1;MQM=59.9837;MQMR=59.991;NS=93;NUMALT=1;ODDS=0.910271;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61080;QR=159060;RO=4439;RPL=8;RPP=3657.92;RPPR=9546.87;RPR=1707;RUN=1;SAF=1;SAP=3718.4;SAR=1714;SRF=0;SRP=9642.18;SRR=4439;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:52:17,35:17:612:35:1252:-97.3315,0,-39.7599	0/0:144:144,0:144:5151:0:0:0,-43.3483,-463.731	0/0:131:131,0:131:4708:0:0:0,-39.4349,-423.878	0/1:17:6,11:6:216:11:380:-29.4145,0,-14.673	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:79:35,44:35:1248:44:1563:-117.179,0,-88.8435	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:88:87,0:87:3112:0:0:0,-26.1896,-279.947	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:67:67,0:67:2360:0:0:0,-20.169,-212.657	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/1:77:43,34:43:1535:34:1195:-84.6719,0,-115.263	0/1:74:43,31:43:1539:31:1103:-77.3036,0,-116.526	0/1:82:42,40:42:1500:40:1424:-103.773,0,-110.61	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.572	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/1:50:26,24:26:932:24:841:-60.9549,0,-69.1474	0/1:44:17,27:17:612:27:968:-74.192,0,-42.1681	0/1:109:34,75:34:1220:75:2681:-208.721,0,-77.2945	0/1:166:65,101:65:2328:101:3589:-273.246,0,-159.809	0/1:66:22,44:22:788:44:1569:-121.632,0,-51.3768	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:44:40,4:40:1432:4:144:-0.0682978,0,-115.932	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:113:39,74:39:1396:74:2626:-202.57,0,-91.9227	0/0:139:139,0:139:4992:0:0:0,-41.8432,-449.426	0/0:35:34,1:34:1216:1:36:0,-6.93777,-106.126	0/1:163:49,114:49:1764:114:4052:-315.8,0,-109.976	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	.:.:.:.:.:.:.:.	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:201:98,103:98:3524:103:3675:-270.446,0,-256.861	0/1:55:37,18:37:1324:18:648:-42.0952,0,-102.905	0/1:60:34,26:34:1201:26:928:-65.7765,0,-90.3319	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:65:26,39:26:932:39:1400:-106.732,0,-64.6319	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:62:62,0:62:2223:0:0:0,-18.6639,-200.333	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.465	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:75:33,42:33:1188:42:1503:-112.985,0,-84.6513	0/1:56:26,30:26:932:30:1076:-80.2952,0,-67.3412	0/1:62:30,32:30:1080:32:1135:-83.7936,0,-78.8494	0/1:103:54,49:54:1936:49:1760:-127.678,0,-143.51	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:123:123,0:123:4424:0:0:0,-37.0267,-398.329	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:112:108,4:108:3876:4:144:0,-20.4017,-335.72	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/1:89:30,59:30:1076:59:2086:-161.215,0,-70.3612	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:76:72,4:72:2576:4:140:0,-9.9337,-219.145	0/1:93:33,60:33:1180:60:2138:-164.691,0,-78.5123	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:42:40,2:40:1423:2:72:0,-5.80654,-121.53	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:103:41,62:41:1472:62:2228:-169.778,0,-101.77	0/1:78:31,47:31:1103:47:1680:-128.007,0,-76.0995	0/0:94:94,0:94:3360:0:0:0,-28.2968,-302.617	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:41:15,26:15:540:26:932:-71.8566,0,-36.5943	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:66:20,46:20:720:46:1637:-127.75,0,-45.2608	0/1:113:66,47:66:2376:47:1672:-116.751,0,-180.081	0/1:126:55,71:55:1976:71:2544:-191.281,0,-140.185	0/1:58:32,26:32:1144:26:932:-66.7368,0,-85.8098	0/1:88:51,37:51:1832:37:1311:-91.8002,0,-138.67	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:160:74,86:74:2634:86:3029:-224.675,0,-189.142	0/1:19:10,9:10:360:9:315:-22.9677,0,-27.0247	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:47:15,32:15:540:32:1148:-89.4814,0,-34.7881	0/1:112:63,49:63:2251:49:1741:-123.257,0,-169.137	0/1:69:25,44:25:900:44:1567:-120.55,0,-60.5499	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:141:141,0:141:5046:0:0:0,-42.4452,-454.284
chr01	32381001	.	T	C	29390.6	PASS	AB=0.55315;ABP=78.9529;AC=39;AF=0.209677;AN=186;AO=1724;CIGAR=1X;DP=6199;DPB=6199;DPRA=1.37529;EPP=3746.63;EPPR=9718.18;GTI=6;LEN=1;MEANALT=1;MQM=59.989;MQMR=59.9908;NS=93;NUMALT=1;ODDS=0.240637;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61412;QR=160235;RO=4474;RPL=1724;RPP=3746.63;RPPR=9718.18;RPR=0;RUN=1;SAF=0;SAP=3746.63;SAR=1724;SRF=0;SRP=9718.18;SRR=4474;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:51:16,35:16:561:35:1256:-97.9928,0,-35.4646	0/0:146:146,0:146:5232:0:0:0,-43.9504,-471.017	0/0:132:132,0:132:4725:0:0:0,-39.736,-425.407	0/1:16:6,10:6:216:10:352:-27.2017,0,-14.974	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:78:35,43:35:1241:43:1533:-114.781,0,-88.5122	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/0:90:90,0:90:3206:0:0:0,-27.0927,-288.76	0/0:67:67,0:67:2359:0:0:0,-20.169,-212.564	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:77:44,33:44:1576:33:1150:-80.6193,0,-118.952	0/1:75:42,33:42:1508:33:1154:-81.585,0,-113.437	0/1:83:42,41:42:1512:41:1464:-107.07,0,-111.389	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/1:47:24,23:24:860:23:820:-59.9741,0,-63.5734	0/1:44:17,27:17:612:27:953:-72.838,0,-42.1681	0/1:112:35,77:35:1260:77:2764:-215.281,0,-79.9901	0/1:172:69,103:69:2465:103:3639:-275.934,0,-170.325	0/1:64:20,44:20:720:44:1580:-123.225,0,-45.8629	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:44:40,4:40:1440:4:144:-0.0682978,0,-116.652	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:111:39,72:39:1396:72:2573:-198.404,0,-92.5244	0/0:139:139,0:139:4992:0:0:0,-41.8432,-449.426	0/0:35:34,1:34:1220:1:36:0,-6.93777,-106.486	0/1:161:48,113:48:1724:113:4022:-313.701,0,-106.98	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.044	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	.:.:.:.:.:.:.:.	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/1:202:97,105:97:3473:105:3726:-274.732,0,-251.972	0/1:54:35,19:35:1252:19:680:-45.2735,0,-96.7295	0/1:61:34,27:34:1220:27:934:-66.0053,0,-91.744	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:66:26,40:26:932:40:1421:-108.317,0,-64.3309	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:64:64,0:64:2274:0:0:0,-19.2659,-204.919	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.105	0/0:79:79,0:79:2823:0:0:0,-23.7814,-254.309	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:76:32,44:32:1148:44:1561:-117.901,0,-80.7516	0/1:54:25,29:25:900:29:1025:-76.3051,0,-65.0654	0/1:61:30,31:30:1080:31:1106:-81.4877,0,-79.1504	0/1:104:54,50:54:1940:50:1773:-128.544,0,-143.569	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:127:127,0:127:4556:0:0:0,-38.2308,-410.205	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:113:107,6:107:3852:6:201:0,-15.5993,-328.457	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/1:91:30,61:30:1080:61:2184:-169.432,0,-70.1195	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:74:70,4:70:2516:4:144:0,-8.9626,-213.378	0/1:97:33,64:33:1188:64:2281:-176.35,0,-78.0287	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:42:41,1:41:1472:1:36:0,-9.04498,-129.178	0/0:41:40,0:40:1425:0:0:0,-12.0412,-128.332	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:104:42,62:42:1508:62:2224:-169.117,0,-104.707	0/1:79:31,48:31:1112:48:1694:-128.961,0,-76.61	0/0:95:95,0:95:3386:0:0:0,-28.5978,-304.953	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.935	0/1:37:14,23:14:504:23:828:-63.706,0,-34.56	0/0:65:65,0:65:2306:0:0:0,-19.5669,-207.798	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7375	0/1:66:20,46:20:716:46:1644:-128.381,0,-44.8997	0/1:113:68,45:68:2448:45:1605:-110.723,0,-186.558	0/1:126:55,71:55:1949:71:2529:-189.93,0,-137.754	0/1:60:34,26:34:1220:26:936:-66.4977,0,-92.045	0/1:87:51,36:51:1824:36:1292:-90.3942,0,-138.251	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.249	0/1:163:76,87:76:2720:87:3124:-232.318,0,-195.976	0/1:20:10,10:10:360:10:356:-26.3606,0,-26.7237	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:47:15,32:15:540:32:1152:-89.8417,0,-34.7881	0/1:112:64,48:64:2285:48:1724:-121.73,0,-172.195	0/1:69:25,44:25:900:44:1576:-121.36,0,-60.5499	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:145:145,0:145:5197:0:0:0,-43.6493,-467.866
chr01	32402432	.	C	T	187813	PASS	AB=0.47886;ABP=27.5237;AC=148;AF=0.787234;AN=188;AO=8961;CIGAR=1X;DP=12276;DPB=12276;DPRA=0;EPP=19461.6;EPPR=7184.07;GTI=5;LEN=1;MEANALT=1.08511;MQM=59.983;MQMR=60;NS=94;NUMALT=1;ODDS=1.17385;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=321114;QR=117926;RO=3307;RPL=0;RPP=19461.6;RPPR=7184.07;RPR=8961;RUN=1;SAF=8961;SAP=19461.6;SAR=0;SRF=3307;SRP=7184.07;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1568:-141.411,-13.2453,0	0/1:228:99,129:99:3520:129:4616:-346.969,0,-248.377	1/1:125:0,125:0:0:125:4465:-402.019,-37.6288,0	1/1:258:2,256:2:72:256:9160:-817.53,-70.829,0	0/1:128:55,73:55:1976:73:2616:-197.156,0,-139.583	0/1:72:36,36:36:1284:36:1288:-94.5494,0,-94.1893	0/1:126:43,83:43:1532:83:2957:-228.434,0,-100.243	1/1:196:2,194:2:68:194:6940:-618.209,-52.5442,0	1/1:177:0,177:0:0:177:6336:-570.314,-53.2823,0	1/1:105:0,105:0:0:105:3752:-337.881,-31.6082,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:72:1,71:1:36:71:2540:-225.252,-18.0759,0	0/1:88:38,50:38:1356:50:1800:-135.792,0,-95.8498	0/1:63:29,34:29:1040:34:1224:-91.5022,0,-74.9495	0/1:92:43,49:43:1540:49:1756:-130.629,0,-111.198	1/1:74:0,74:0:0:74:2664:-240.005,-22.2762,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:96:60,36:60:2148:36:1288:-87.3247,0,-164.689	0/1:35:16,19:16:576:19:680:-50.9931,0,-41.6389	0/1:352:185,167:185:6596:167:5992:-433.421,0,-487.762	0/1:249:132,117:132:4740:117:4196:-302.864,0,-351.8	0/1:134:100,34:100:3556:34:1216:-69.4085,0,-279.912	1/1:140:0,140:0:0:140:5032:-453.001,-42.1442,0	1/1:138:8,129:8:288:129:4632:-390.756,-15.3335,0	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0	0/1:523:265,258:265:9426:258:9264:-676.285,0,-690.868	1/1:275:1,274:1:36:274:9833:-881.311,-79.185,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:354:199,154:199:7100:154:5524:-390.661,0,-532.439	1/1:188:0,188:0:0:188:6732:-605.953,-56.5936,0	1/1:178:0,177:0:0:177:6364:-572.117,-53.2823,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:238:123,115:123:4367:115:4126:-299.878,0,-321.562	0/1:344:173,171:173:6184:171:6129:-448.13,0,-453.105	0/1:87:30,57:30:1076:57:2048:-158.402,0,-70.9632	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:168:82,86:82:2924:86:3077:-226.583,0,-212.823	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:183:0,183:0:0:183:6545:-589.131,-55.0885,0	1/1:130:0,130:0:0:130:4676:-420.999,-39.1339,0	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	1/1:141:0,141:0:0:141:5045:-454.038,-42.4452,0	1/1:123:1,122:1:36:122:4376:-390.415,-33.4284,0	0/1:239:114,124:114:4044:124:4433:-327.135,0,-292.147	0/1:155:80,75:80:2833:75:2688:-195.505,0,-208.549	0/1:253:137,115:137:4912:115:4125:-295.214,0,-366.011	0/1:224:111,113:111:3944:113:4017:-294.289,0,-287.724	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:112:0,112:0:0:112:3993:-359.56,-33.7154,0	1/1:35:0,35:0:0:35:1248:-112.624,-10.5361,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:132:0,132:0:0:132:4716:-424.601,-39.736,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:39:24,15:24:860:15:532:-36.4729,0,-65.9817	1/1:121:0,121:0:0:121:4324:-389.337,-36.4246,0	1/1:123:1,122:1:36:122:4391:-391.762,-33.4284,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:316:0,315:0:0:315:11277:-1014.44,-94.8245,0	0/1:297:165,132:165:5888:132:4736:-336.992,0,-440.627	1/1:126:2,124:2:72:124:4456:-394.372,-31.0931,0	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:302:2,300:2:68:300:10726:-958.787,-84.4534,0	0/1:106:74,31:74:2648:31:1100:-67.3425,0,-206.599	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:103:56,47:56:1996:47:1684:-120.841,0,-148.908	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:58:31,27:31:1108:27:964:-69.6171,0,-82.5713	0/1:91:46,45:46:1624:45:1620:-118.696,0,-119.055	1/1:246:0,246:0:0:246:8820:-793.785,-74.0534,0	1/1:245:1,244:1:36:244:8747:-783.618,-70.1541,0	0/1:128:75,53:75:2692:53:1896:-132.386,0,-203.992	1/1:215:0,215:0:0:215:7720:-694.83,-64.7215,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:156:72,84:72:2572:84:3004:-223.631,0,-184.769	0/1:158:92,66:92:3272:66:2368:-165.815,0,-247.139	0/1:288:142,146:142:5064:146:5240:-385.039,0,-369.211	0/1:120:72,48:72:2564:48:1720:-118.962,0,-194.887	0/1:77:41,36:41:1460:36:1292:-93.4045,0,-108.517	1/1:154:0,154:0:0:154:5497:-494.787,-46.3586,0	0/1:196:107,88:107:3804:88:3148:-224.485,0,-283.5	0/1:53:25,28:25:900:28:1004:-74.7213,0,-65.3664	1/1:99:0,99:0:0:99:3560:-320.607,-29.802,0	1/1:102:0,102:0:0:102:3651:-328.794,-30.7051,0	0/1:34:13,21:13:452:21:752:-57.7712,0,-30.7761	0/1:70:36,34:36:1284:34:1220:-89.0347,0,-94.7913	0/1:86:59,27:59:2104:27:964:-61.1882,0,-163.741	1/1:152:0,152:0:0:152:5460:-491.526,-45.7566,0	1/1:117:0,117:0:0:117:4196:-377.809,-35.2205,0
chr01	32402525	.	T	G	70796.1	PASS	AB=0.591733;ABP=377.898;AC=43;AF=0.228723;AN=188;AO=3044;CIGAR=1X;DP=9875;DPB=9875;DPRA=1.36408;EPP=638.712;EPPR=799.171;GTI=7;LEN=1;MEANALT=1.08696;MQM=59.9711;MQMR=59.9864;NS=94;NUMALT=1;ODDS=0.386809;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108683;QR=244765;RO=6826;RPL=1997;RPP=646.819;RPPR=799.171;RPR=1047;RUN=1;SAF=3;SAP=6586.94;SAR=3041;SRF=0;SRP=14825.5;SRR=6826;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/1:65:26,39:26:921:39:1392:-106.012,0,-63.6383	0/0:168:168,0:168:6040:0:0:0,-50.573,-543.7	0/0:199:198,1:198:7108:1:36:0,-56.3067,-636.178	0/1:53:25,28:25:896:28:1000:-74.3608,0,-65.0058	0/1:57:16,41:16:572:41:1464:-114.897,0,-34.6547	0/1:138:45,93:45:1605:93:3310:-256.577,0,-103.196	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.565	0/0:109:109,0:109:3892:0:0:0,-32.8123,-350.463	0/0:154:154,0:154:5528:0:0:0,-46.3586,-497.643	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/1:95:47,48:47:1688:48:1728:-127.207,0,-123.609	0/1:105:34,71:34:1216:71:2533:-196.612,0,-78.1384	0/1:83:42,40:42:1508:40:1419:-102.962,0,-110.97	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:22:21,1:21:756:1:36:0,-3.02438,-64.7689	0/1:43:20,23:20:716:23:824:-61.539,0,-51.8234	0/1:36:13,23:13:468:23:828:-64.007,0,-31.6226	0/1:161:38,123:38:1364:123:4391:-346.897,0,-74.5949	0/1:103:56,47:56:2008:47:1688:-121.201,0,-149.987	0/1:114:25,89:25:900:89:3180:-252.107,0,-47.0036	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/1:42:32,10:32:1152:10:360:-20.101,0,-91.3469	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/1:302:136,166:136:4880:166:5929:-442.804,0,-348.44	0/0:255:255,0:255:9142:0:0:0,-76.7626,-822.747	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:274:130,144:130:4657:144:5127:-379.086,0,-336.807	0/0:128:128,0:128:4558:0:0:0,-38.5318,-410.385	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.276	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:175:92,83:92:3281:83:2928:-211.072,0,-242.829	0/1:190:68,122:68:2432:122:4343:-333.851,0,-161.94	0/1:55:30,25:30:1080:25:892:-64.043,0,-80.9566	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:168:76,92:76:2724:92:3296:-246.286,0,-194.83	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:143:143,0:143:5132:0:0:0,-43.0473,-462.02	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.667	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.913	0/1:234:98,136:98:3524:136:4847:-365.945,0,-246.927	0/1:146:55,91:55:1961:91:3248:-248.59,0,-132.813	0/1:156:69,87:69:2472:87:3108:-232.982,0,-175.773	0/1:172:49,123:49:1760:123:4386:-343.137,0,-106.907	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.518	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:163:163,0:163:5848:0:0:0,-49.0679,-526.402	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/0:132:130,1:130:4623:1:36:0,-36.1965,-412.633	0/0:119:119,0:119:4280:0:0:0,-35.8226,-385.376	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:193:193,0:193:6932:0:0:0,-58.0988,-623.943	0/1:216:102,114:102:3649:114:4071:-301.552,0,-263.59	0/0:119:119,0:119:4261:0:0:0,-35.8226,-383.667	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.729	0/0:139:139,0:139:4984:0:0:0,-41.8432,-448.621	0/1:258:60,198:60:2156:198:7082:-559.746,0,-116.641	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:92:28,64:28:1008:64:2288:-178.484,0,-63.3416	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:193:71,122:71:2544:122:4364:-334.835,0,-171.112	0/1:173:84,89:84:3020:89:3165:-232.996,0,-219.952	0/0:189:189,0:189:6792:0:0:0,-56.8947,-611.349	0/0:208:208,0:208:7472:0:0:0,-62.6142,-672.52	0/1:170:52,118:52:1860:118:4232:-329.882,0,-116.504	0/0:108:107,1:107:3817:1:36:0,-28.913,-340.128	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:112:53,57:53:1908:57:2048:-151.118,0,-138.524	0/1:126:55,71:55:1972:71:2548:-191.639,0,-139.825	0/1:176:74,101:74:2644:101:3603:-271.437,0,-185.167	0/1:77:35,42:35:1248:42:1485:-110.763,0,-89.4456	0/1:66:27,39:27:968:39:1391:-105.62,0,-67.5694	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:154:76,78:76:2724:78:2796:-205.517,0,-199.042	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	0/0:111:111,0:111:3992:0:0:0,-33.4143,-359.468	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.514	0/1:81:39,42:39:1404:42:1495:-110.46,0,-102.276	0/1:147:67,80:67:2412:80:2857:-213.115,0,-173.084	0/1:77:22,55:22:773:55:1965:-153.944,0,-46.7102	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.034
chr01	32402537	.	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chr01	32410444	.	T	C	98014	PASS	AB=0.522925;ABP=18.2431;AC=147;AF=0.781915;AN=188;AO=4714;CIGAR=1X;DP=6327;DPB=6327;DPRA=0;EPP=10239.3;EPPR=3492.57;GTI=2;LEN=1;MEANALT=1.06383;MQM=59.9782;MQMR=59.9963;NS=94;NUMALT=1;ODDS=0.731368;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168023;QR=57424;RO=1607;RPL=4;RPP=10204.6;RPPR=3423.43;RPR=4710;RUN=1;SAF=4;SAP=10204.6;SAR=4710;SRF=8;SRP=3423.43;SRR=1599;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1575:-142.042,-13.2453,0	0/1:95:47,48:47:1676:48:1703:-124.955,0,-122.529	1/1:119:1,118:1:36:118:4196:-374.223,-32.2243,0	1/1:127:0,126:0:0:126:4474:-402.608,-37.9298,0	0/1:70:29,41:29:1040:41:1476:-112.064,0,-72.8423	0/1:27:14,13:14:496:13:468:-34.3318,0,-36.8465	0/1:122:65,57:65:2316:57:2040:-147.146,0,-171.975	1/1:150:1,149:1:21:149:5346:-479.171,-43.0546,0	1/1:65:0,65:0:0:65:2282:-205.638,-19.567,0	1/1:80:0,80:0:0:80:2853:-257.007,-24.0824,0	1/1:33:0,33:0:0:33:1155:-104.253,-9.93399,0	1/1:39:0,39:0:0:39:1370:-123.597,-11.7402,0	0/1:34:15,19:15:540:19:671:-50.4808,0,-38.7015	0/1:46:24,22:24:864:22:792:-57.7583,0,-64.2352	0/1:32:14,18:14:504:18:644:-48.6576,0,-36.0651	1/1:37:0,37:0:0:37:1323:-119.371,-11.1381,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:33:16,17:16:572:17:612:-45.4794,0,-41.8794	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/1:125:66,59:66:2360:59:2107:-152.27,0,-175.03	0/1:98:64,34:64:2296:34:1220:-80.6059,0,-177.4	0/1:84:50,34:50:1777:34:1220:-84.8203,0,-134.924	1/1:50:1,49:1:36:49:1752:-154.366,-11.4532,0	1/1:103:2,101:2:72:101:3615:-318.718,-24.1694,0	1/1:62:0,62:0:0:62:2209:-199.074,-18.6639,0	0/1:187:80,107:80:2868:107:3818:-287.524,0,-202.064	1/1:130:0,130:0:0:130:4606:-414.705,-39.1339,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	0/1:187:88,99:88:3156:99:3529:-261.526,0,-227.972	1/1:90:2,88:2:72:88:3084:-270.948,-20.256,0	1/1:63:0,63:0:0:63:2241:-201.952,-18.9649,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:104:52,52:52:1847:52:1864:-136.732,0,-135.202	0/1:192:70,122:70:2471:122:4357:-334.278,0,-164.844	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:76:24,52:24:860:52:1856:-144.44,0,-54.8436	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:83:0,83:0:0:83:2962:-266.812,-24.9855,0	1/1:47:0,47:0:0:47:1659:-149.598,-14.1484,0	1/1:31:0,31:0:0:31:1097:-99.0394,-9.33193,0	1/1:84:1,82:1:36:82:2928:-260.157,-21.747,0	1/1:82:0,82:0:0:82:2943:-265.104,-24.6845,0	0/1:125:50,75:50:1800:75:2679:-203.726,0,-124.653	0/1:111:53,58:53:1873:58:2051:-151.445,0,-135.433	0/1:119:42,77:42:1508:77:2759:-212.728,0,-100.192	0/1:159:94,65:94:3368:65:2319:-161.106,0,-255.472	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:101:0,101:0:0:101:3611:-325.196,-30.404,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:76:0,75:0:0:75:2675:-240.635,-22.5773,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:29:10,19:10:360:19:684:-53.1605,0,-24.0144	1/1:38:0,38:0:0:38:1335:-120.447,-11.4391,0	1/1:89:0,89:0:0:89:3187:-287.053,-26.7917,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:171:1,170:1:36:170:6089:-544.511,-47.8779,0	0/1:150:76,74:76:2724:74:2644:-193.052,0,-200.249	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:54:2,52:2:72:52:1849:-159.851,-9.4189,0	1/1:142:1,140:1:36:140:4984:-445.111,-39.2068,0	0/1:69:46,23:46:1629:23:809:-52.3572,0,-126.126	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:76:39,37:39:1396:37:1319:-96.1329,0,-103.061	1/1:58:1,56:1:36:56:1980:-174.947,-13.8453,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:118:45,73:45:1620:73:2570:-196.026,0,-110.568	0/1:40:25,15:25:896:15:536:-36.5336,0,-68.9192	1/1:108:0,108:0:0:108:3880:-349.393,-32.5112,0	1/1:98:0,98:0:0:98:3518:-316.829,-29.5009,0	0/1:86:42,44:42:1508:44:1557:-114.529,0,-110.126	1/1:49:3,46:3:108:46:1634:-137.272,-4.6753,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:86:34,51:34:1216:51:1818:-137.953,0,-83.7993	0/1:73:25,48:25:887:48:1704:-131.671,0,-58.1729	0/1:212:103,109:103:3688:109:3902:-287.555,0,-268.304	0/1:88:43,45:43:1544:45:1596:-117.438,0,-112.758	0/1:38:18,20:18:644:20:716:-53.3286,0,-46.8515	1/1:51:0,51:0:0:51:1809:-163.091,-15.3525,0	0/1:76:47,29:47:1676:29:1025:-69.6824,0,-128.249	0/1:33:13,20:13:464:20:702:-53.5452,0,-32.1635	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:37:14,23:14:496:23:828:-63.706,0,-33.8362	0/1:36:24,12:24:847:12:424:-27.6593,0,-65.7116	1/1:74:0,74:0:0:74:2642:-238.009,-22.2762,0	1/1:43:0,43:0:0:43:1507:-135.919,-12.9443,0
chr01	32445199	.	GCTCAG	GCACAA,GCTCAA	114045	PASS	AB=0.536719,0.453782;ABP=35.0635,53.7936;AC=145,39;AF=0.788043,0.211957;AN=184;AO=4292,1256;CIGAR=2M1X2M1X,5M1X;DP=5600;DPB=5600.17;DPRA=0,1.36481;EPP=8961.73,2618.63;EPPR=9.52472;GTI=0;LEN=6,1;MEANALT=2.03261,2.58333;MQM=59.9911,60;MQMR=60;NS=92;NUMALT=2;ODDS=2.27011;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.833333;PQA=12,30;PQR=30;PRO=0.833333;QA=145509,43988;QR=99;RO=3;RPL=4250,1243;RPP=8961.73,2618.63;RPPR=9.52472;RPR=42,13;RUN=1,1;SAF=4292,1256;SAP=9322.97,2730.38;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25,0:0:0:25,0:878,0:-79.3374,-7.52575,0,-79.3374,-7.52575,-79.3374	1/2:71:0,32,39:0:0:32,39:1056,1356:-195.962,-110.596,-100.963,-85.7038,0,-73.9637	1/1:68:0,68,0:0:0:68,0:2306,0:-207.799,-20.47,0,-207.799,-20.47,-207.799	1/1:130:0,128,0:0:0:128,0:4345,0:-390.986,-38.5318,0,-390.986,-38.5318,-390.986	1/2:34:0,16,18:0:0:16,18:553,629:-96.4464,-51.5152,-46.6988,-45.2784,0,-39.8599	1/2:41:0,21,20:0:0:21,20:711,707:-115.571,-57.9346,-51.613,-57.9828,0,-51.9622	1/2:108:0,61,47:0:0:61,47:2022,1660:-299.081,-135.539,-117.176,-163.886,0,-149.737	1/1:72:0,72,0:0:0:72,0:2471,0:-222.643,-21.6742,0,-222.643,-21.6742,-222.643	1/1:46:0,46,0:0:0:46,0:1597,0:-144.017,-13.8474,0,-144.017,-13.8474,-144.017	1/1:61:0,61,0:0:0:61,0:2090,0:-188.367,-18.3628,0,-188.367,-18.3628,-188.367	1/1:42:0,41,1:0:0:41,1:1387,36:-124.761,-12.3422,0,-121.823,-9.04499,-121.522	1/1:45:0,45,0:0:0:45,0:1585,0:-142.94,-13.5464,0,-142.94,-13.5464,-142.94	1/2:40:0,24,16:0:0:24,16:854,555:-115.065,-45.4596,-38.2348,-69.9561,0,-65.1396	1/2:37:0,15,22:0:0:15,22:524,784:-106.883,-64.2613,-59.7458,-42.9738,0,-36.3511	1/2:30:0,13,17:0:0:13,17:433,600:-84.2457,-49.2117,-45.2983,-35.3756,0,-30.2581	1/1:68:0,67,0:0:0:67,0:2200,0:-197.904,-20.169,0,-197.904,-20.169,-197.904	1/1:53:0,53,0:0:0:53,0:1826,0:-164.62,-15.9546,0,-164.62,-15.9546,-164.62	1/2:26:0,16,10:0:0:16,10:546,351:-73.215,-28.9164,-24.0999,-44.6457,0,-41.6354	1/2:28:0,13,14:0:0:13,14:440,492:-75.7134,-40.048,-36.1346,-35.6606,0,-31.4462	1/2:115:0,69,44:0:0:69,44:2264,1519:-306.308,-123.395,-102.624,-182.896,0,-169.651	1/2:80:0,53,27:0:0:53,27:1803,968:-225.55,-79.3096,-63.355,-146.592,0,-138.465	1/2:97:0,27,69:0:0:27,69:880,2434:-269.273,-198.233,-190.105,-71.0623,0,-50.2912	1/1:21:0,21,0:0:0:21,0:710,0:-64.2143,-6.32163,0,-64.2143,-6.32163,-64.2143	1/1:84:0,79,3:0:0:79,3:2693,93:-242.304,-23.7814,0,-234.841,-16.3176,-233.938	1/1:54:0,52,1:0:0:52,1:1762,36:-158.535,-15.6536,0,-155.597,-12.6787,-155.296	1/2:193:0,102,88:0:0:102,88:3446,3117:-533.286,-253.974,-223.269,-279.366,0,-252.875	1/1:111:0,110,0:0:0:110,0:3739,0:-336.373,-33.1133,0,-336.373,-33.1133,-336.373	1/1:39:0,39,0:0:0:39,0:1326,0:-119.634,-11.7402,0,-119.634,-11.7402,-119.634	1/2:164:0,82,81:0:0:82,81:2799,2764:-451.512,-224.385,-199.7,-227.236,0,-202.853	1/1:83:1,80,1:1:32:80,1:2699,36:-239.966,-21.499,0,-237.329,-21.12,-239.606	1/1:74:0,73,0:0:0:73,0:2520,0:-226.831,-21.9752,0,-226.831,-21.9752,-226.831	1/1:8:0,8,0:0:0:8,0:282,0:-25.7211,-2.40824,0,-25.7211,-2.40824,-25.7211	1/1:13:0,13,0:0:0:13,0:438,0:-39.7415,-3.91339,0,-39.7415,-3.91339,-39.7415	1/1:4:0,4,0:0:0:4,0:118,0:-10.9129,-1.20412,0,-10.9129,-1.20412,-10.9129	1/1:6:0,6,0:0:0:6,0:202,0:-18.5094,-1.80618,0,-18.5094,-1.80618,-18.5094	1/1:6:0,6,0:0:0:6,0:209,0:-19.1506,-1.80618,0,-19.1506,-1.80618,-19.1506	1/2:103:0,52,51:0:0:52,51:1778,1808:-291.947,-147.649,-131.996,-144.646,0,-129.293	1/2:80:0,50,29:0:0:50,29:1675,1002:-217.093,-81.4548,-66.4033,-135.678,0,-126.948	1/2:40:0,23,17:0:0:23,17:806,612:-115.874,-50.2959,-43.3722,-65.9337,0,-60.8162	.:.:.:.:.:.:.:.	1/2:97:0,54,42:0:0:54,42:1820,1465:-266.627,-119.149,-102.894,-147.471,0,-134.828	1/1:21:0,21,0:0:0:21,0:727,0:-65.7486,-6.32163,0,-65.7486,-6.32163,-65.7486	1/1:100:0,99,0:0:0:99,0:3347,0:-301.093,-29.802,0,-301.093,-29.802,-301.093	1/1:33:0,33,0:0:0:33,0:1148,0:-103.625,-9.93399,0,-103.625,-9.93399,-103.625	1/1:35:0,35,0:0:0:35,0:1201,0:-108.389,-10.5361,0,-108.389,-10.5361,-108.389	1/1:55:0,51,0:0:0:51,0:1692,0:-152.272,-15.3525,0,-152.272,-15.3525,-152.272	1/1:80:0,78,1:0:0:78,1:2651,36:-238.49,-23.4803,0,-235.552,-20.533,-235.251	1/2:103:0,48,55:0:0:48,55:1624,1908:-287.091,-155.439,-140.989,-131.994,0,-115.437	1/2:80:1,48,30:1:31:48,30:1635,1045:-214.896,-82.5553,-70.5932,-130.214,0,-123.671	1/2:69:0,50,19:0:0:50,19:1740,656:-195.125,-53.6398,-38.5883,-141.831,0,-136.112	1/2:155:0,75,79:0:0:75,79:2417,2730:-416.786,-221.913,-199.336,-194.955,0,-171.173	1/1:2:0,2,0:0:0:2,0:61,0:-5.79323,-0.60206,0,-5.79323,-0.60206,-5.79323	1/1:144:0,142,0:0:0:142,0:4541,0:-408.589,-42.7463,0,-408.589,-42.7463,-408.589	1/1:42:0,42,0:0:0:42,0:1419,0:-127.999,-12.6433,0,-127.999,-12.6433,-127.999	1/1:18:0,18,0:0:0:18,0:616,0:-55.7603,-5.41854,0,-55.7603,-5.41854,-55.7603	1/1:76:0,75,0:0:0:75,0:2560,0:-230.402,-22.5773,0,-230.402,-22.5773,-230.402	1/1:37:0,36,1:0:0:36,1:1185,36:-106.584,-10.8371,0,-103.646,-7.53984,-103.345	1/1:6:0,5,0:0:0:5,0:175,0:-15.82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chr01	32445279	.	C	T	15171.1	PASS	AB=0.39465;ABP=266.089;AC=41;AF=0.218085;AN=188;AO=1085;CIGAR=1X;DP=5753;DPB=5753;DPRA=1.34105;EPP=2359.06;EPPR=10128.6;GTI=1;LEN=1;MEANALT=1.02222;MQM=59.7806;MQMR=59.9807;NS=94;NUMALT=1;ODDS=2.29164;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37631;QR=165485;RO=4667;RPL=0;RPP=2359.06;RPPR=10128.6;RPR=1085;RUN=1;SAF=0;SAP=2359.06;SAR=1085;SRF=0;SRP=10137.3;SRR=4667;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/1:56:29,27:29:1028:27:935:-67.6023,0,-75.9754	0/0:105:105,0:105:3755:0:0:0,-31.6081,-338.15	0/0:167:165,2:165:5837:2:57:0,-44.8587,-520.03	0/1:23:11,12:11:396:12:403:-29.6694,0,-29.0591	0/1:22:14,8:14:504:8:279:-18.8249,0,-39.0754	0/1:102:63,39:63:2219:39:1356:-91.6289,0,-169.27	0/0:79:78,1:78:2759:1:36:0,-20.2604,-245.027	0/0:63:63,0:63:2218:0:0:0,-18.9649,-199.884	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.099	0/0:38:38,0:38:1344:0:0:0,-11.4391,-121.26	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/1:52:26,26:26:923:26:894:-65.0956,0,-67.7332	0/1:39:26,13:26:915:13:455:-29.5418,0,-70.9254	0/1:25:15,10:15:531:10:356:-24.8541,0,-40.5962	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:57:57,0:57:1994:0:0:0,-17.1587,-179.73	0/1:27:21,6:21:743:6:203:-10.4734,0,-59.0655	0/1:16:9,7:9:311:7:224:-15.6545,0,-23.5072	0/1:110:75,35:75:2630:35:1226:-77.5254,0,-203.83	0/1:87:56,31:56:1992:31:1088:-72.0381,0,-153.365	0/1:83:49,33:49:1727:33:1164:-80.1489,0,-130.797	0/0:20:19,1:19:684:1:32:0,-2.82129,-58.691	0/0:68:66,2:66:2352:2:72:0,-13.6333,-205.103	0/0:43:43,0:43:1510:0:0:0,-12.9443,-136.192	0/1:128:70,58:70:2512:58:2008:-142.459,0,-187.8	0/0:140:140,0:140:4932:0:0:0,-42.1442,-444.034	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:167:91,76:91:3232:76:2609:-184.786,0,-240.832	0/0:111:110,1:110:3891:1:32:0,-30.215,-347.181	0/0:74:74,0:74:2634:0:0:0,-22.2762,-237.306	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	1/1:1:0,1:0:0:1:21:-2.09995,-0.30103,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:80:38,42:38:1326:42:1484:-109.771,0,-95.5557	0/1:161:99,62:99:3476:62:2183:-148.267,0,-264.586	0/1:34:19,15:19:667:15:523:-37.1071,0,-50.1196	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:100:62,38:62:2189:38:1318:-88.8127,0,-167.171	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:105:105,0:105:3730:0:0:0,-31.6081,-335.902	0/0:27:27,0:27:935:0:0:0,-8.12781,-84.4621	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:108:108,0:108:3834:0:0:0,-32.5112,-345.258	0/1:171:138,33:138:4931:33:1130:-50.526,0,-392.465	0/1:65:44,21:44:1543:21:732:-46.6312,0,-119.591	0/1:85:57,28:57:2014:28:983:-63.1926,0,-155.942	0/1:117:68,49:68:2411:49:1659:-114.373,0,-182.026	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:131:131,0:131:4669:0:0:0,-39.4349,-420.372	0/0:49:49,0:49:1715:0:0:0,-14.7505,-154.634	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:115:115,0:115:4046:0:0:0,-34.6184,-364.328	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.92	0/0:59:59,0:59:2094:0:0:0,-17.7608,-188.729	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:156:156,0:156:5530:0:0:0,-46.9607,-497.806	0/1:121:73,48:73:2595:48:1676:-114.701,0,-197.374	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.556	0/0:88:88,0:88:3096:0:0:0,-26.4906,-278.869	0/0:80:80,0:80:2848:0:0:0,-24.0824,-256.559	0/1:65:41,24:41:1460:24:836:-55.9537,0,-112.129	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:52:31,21:31:1097:21:724:-49.8259,0,-83.3845	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/1:86:45,41:45:1604:41:1431:-103.196,0,-118.75	0/1:39:22,17:22:783:17:592:-41.8653,0,-59.0528	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.926	0/0:113:113,0:113:3999:0:0:0,-34.0164,-360.104	0/1:63:42,21:42:1500:21:718:-45.9708,0,-116.33	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/0:17:17,0:17:591:0:0:0,-5.11751,-53.5153	0/1:70:43,27:43:1523:27:947:-64.4701,0,-116.29	0/1:68:48,20:48:1697:20:676:-40.6134,0,-132.536	0/1:167:102,65:102:3628:65:2211:-148.702,0,-276.455	0/1:45:26,19:26:919:19:672:-47.2605,0,-69.4798	0/1:17:8,9:8:275:9:316:-23.6613,0,-19.966	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:53:27,26:27:952:26:915:-66.7039,0,-70.0406	0/1:19:7,12:7:252:12:416:-32.0512,0,-17.3094	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/0:36:36,0:36:1274:0:0:0,-10.8371,-114.961	0/1:20:8,12:8:288:12:416:-31.751,0,-20.2468	0/1:56:33,23:33:1163:23:816:-56.904,0,-88.1184	0/1:25:5,20:5:180:20:699:-55.7067,0,-9.02631	0/0:77:77,0:77:2730:0:0:0,-23.1793,-245.943	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102
chr01	32445429	.	A	C	37068	PASS	AB=0.513862;ABP=9.87325;AC=42;AF=0.223404;AN=188;AO=2132;CIGAR=1X;DP=8253;DPB=8253;DPRA=1.41906;EPP=4333.57;EPPR=12746.5;GTI=2;LEN=1;MEANALT=1.06818;MQM=59.9831;MQMR=59.9964;NS=94;NUMALT=1;ODDS=0.1465;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75574;QR=217127;RO=6118;RPL=35;RPP=4333.57;RPPR=12755;RPR=2097;RUN=1;SAF=0;SAP=4632.59;SAR=2132;SRF=1;SRP=13279.4;SRR=6117;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/1:59:27,32:27:959:32:1127:-83.9767,0,-68.8646	0/0:159:158,1:158:5595:1:36:0,-44.2655,-500.076	0/0:237:237,0:237:8420:0:0:0,-71.3441,-757.81	0/1:113:58,55:58:2037:55:1938:-140.676,0,-149.582	0/1:51:31,20:31:1091:20:720:-49.7762,0,-83.1462	0/1:93:33,60:33:1172:60:2135:-164.422,0,-77.7917	0/0:101:101,0:101:3574:0:0:0,-30.404,-321.867	0/0:99:99,0:99:3478:0:0:0,-29.802,-313.233	0/0:89:89,0:89:3162:0:0:0,-26.7917,-284.805	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.782	0/0:96:96,0:96:3358:0:0:0,-28.8989,-302.434	0/1:80:36,44:36:1269:44:1543:-115.079,0,-90.4281	0/1:33:15,18:15:540:18:624:-46.546,0,-39.0025	0/1:81:45,36:45:1581:36:1266:-89.8577,0,-118.195	0/0:52:52,0:52:1838:0:0:0,-15.6536,-165.699	0/0:26:26,0:26:907:0:0:0,-7.82678,-81.9444	0/1:20:8,12:8:280:12:419:-32.0221,0,-19.5187	0/1:25:12,13:12:428:13:460:-34.2096,0,-31.3331	0/1:171:88,83:88:3148:83:2952:-214.436,0,-232.069	0/1:154:67,87:67:2396:87:3068:-229.991,0,-169.539	0/1:133:40,92:40:1415:92:3246:-252.405,0,-87.6874	0/0:164:164,0:164:5851:0:0:0,-49.3689,-526.704	0/0:38:37,1:37:1306:1:36:0,-7.84086,-114.242	0/0:148:148,0:148:5271:0:0:0,-44.5524,-474.526	0/1:340:156,184:156:5557:184:6540:-486.334,0,-397.905	0/0:266:266,0:266:9455:0:0:0,-80.074,-850.914	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/1:157:101,56:101:3604:56:1979:-131.122,0,-277.303	0/0:129:129,0:129:4546:0:0:0,-38.8329,-409.308	0/0:88:87,1:87:3059:1:36:0,-22.8924,-271.942	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:226:108,118:108:3840:118:4183:-308.622,0,-277.763	0/1:131:75,56:75:2642:56:1977:-138.768,0,-198.59	0/1:27:7,20:7:252:20:716:-56.6399,0,-14.9011	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:153:80,73:80:2824:73:2604:-188.551,0,-208.341	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:188:188,0:188:6675:0:0:0,-56.5936,-600.831	0/0:49:49,0:49:1739:0:0:0,-14.7505,-156.794	0/0:64:64,0:64:2269:0:0:0,-19.2659,-204.471	0/0:122:122,0:122:4315:0:0:0,-36.7257,-388.529	0/0:96:96,0:96:3419:0:0:0,-28.8989,-307.925	0/1:166:92,74:92:3287:74:2664:-190.034,0,-246.078	0/1:88:45,42:45:1596:42:1468:-105.862,0,-117.381	0/1:85:44,41:44:1572:41:1457:-105.836,0,-116.184	0/1:71:21,50:21:718:50:1770:-138.209,0,-43.5609	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:104:104,0:104:3695:0:0:0,-31.3071,-332.752	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:92:92,0:92:3276:0:0:0,-27.6948,-295.058	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:12:1,11:1:36:11:392:-32.0218,-0.0140851,0	0/0:42:42,0:42:1486:0:0:0,-12.6433,-134.033	0/0:93:93,0:93:3298:0:0:0,-27.9958,-297.04	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:175:175,0:175:6268:0:0:0,-52.6802,-564.214	0/1:190:100,90:100:3568:90:3220:-232.827,0,-264.13	0/0:40:40,0:40:1405:0:0:0,-12.0412,-126.745	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:170:169,1:169:5951:1:36:0,-47.5768,-532.106	0/1:212:80,132:80:2855:132:4670:-356.64,0,-193.369	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:35:14,21:14:500:21:722:-54.7615,0,-34.8001	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/1:146:68,77:68:2396:77:2715:-200.688,0,-171.988	0/1:118:62,56:62:2204:56:2004:-145.112,0,-163.101	0/0:126:126,0:126:4423:0:0:0,-37.9298,-398.245	0/0:158:158,0:158:5654:0:0:0,-47.5627,-508.979	0/1:137:54,83:54:1927:83:2944:-223.952,0,-132.465	0/0:61:61,0:61:2162:0:0:0,-18.3628,-194.846	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:42:25,17:25:883:17:595:-41.2334,0,-67.1442	0/1:97:38,59:38:1360:59:2107:-160.699,0,-93.5007	0/1:258:150,108:150:5345:108:3834:-267.593,0,-403.518	0/1:62:28,34:28:1000:34:1198:-89.4601,0,-71.6515	0/1:68:42,26:42:1480:26:914:-62.1046,0,-113.019	0/0:45:45,0:45:1574:0:0:0,-13.5463,-141.946	0/1:117:57,60:57:2018:60:2148:-158.367,0,-146.671	0/1:36:21,15:21:735:15:525:-36.7418,0,-55.6343	0/0:77:77,0:77:2716:0:0:0,-23.1793,-244.683	0/0:79:79,0:79:2792:0:0:0,-23.7814,-251.52	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:53:33,20:33:1172:20:716:-48.8131,0,-89.8329	0/1:66:26,40:26:936:40:1402:-106.608,0,-64.6915	0/0:85:85,0:85:3024:0:0:0,-25.5875,-272.389	0/0:113:113,0:113:4025:0:0:0,-34.0164,-362.438
chr01	32537154	.	C	T	108755	PASS	AB=0.517541;ABP=12.2282;AC=144;AF=0.774194;AN=186;AO=5171;CIGAR=1X;DP=6840;DPB=6840;DPRA=0;EPP=11231.7;EPPR=3627.2;GTI=0;LEN=1;MEANALT=1;MQM=59.9859;MQMR=59.9742;NS=93;NUMALT=1;ODDS=0.799837;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184870;QR=59723;RO=1669;RPL=0;RPP=11231.7;RPPR=3627.2;RPR=5171;RUN=1;SAF=5171;SAP=11231.7;SAR=0;SRF=1669;SRP=3627.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1428:-128.817,-12.0412,0	0/1:83:50,33:50:1792:33:1170:-80.6211,0,-136.577	1/1:118:1,117:1:36:117:4172:-372.066,-31.9233,0	1/1:209:0,209:0:0:209:7451:-670.637,-62.9153,0	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/1:32:11,21:11:392:21:756:-58.7343,0,-25.9871	0/1:50:33,17:33:1188:17:612:-40.3619,0,-92.1771	1/1:150:0,150:0:0:150:5364:-482.892,-45.1545,0	1/1:120:0,120:0:0:120:4289:-386.169,-36.1236,0	1/1:115:0,115:0:0:115:4112:-370.265,-34.6185,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:95:0,95:0:0:95:3408:-306.934,-28.5979,0	0/1:72:32,40:32:1152:40:1427:-107.053,0,-82.316	0/1:46:30,16:30:1063:16:568:-37.6045,0,-82.1334	0/1:86:43,43:43:1527:43:1544:-113.364,0,-111.834	1/1:49:0,49:0:0:49:1736:-156.524,-14.7505,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:37:23,14:23:828:14:504:-34.56,0,-63.706	0/1:19:7,12:7:252:12:421:-32.5039,0,-17.3094	0/1:106:55,51:55:1972:51:1820:-132.172,0,-145.846	0/1:160:83,77:83:2964:77:2760:-200.477,0,-218.458	0/1:43:33,10:33:1180:10:360:-19.8,0,-93.5638	1/1:127:1,126:1:36:126:4520:-403.368,-34.6325,0	1/1:43:3,40:3:108:40:1423:-118.291,-2.86912,0	1/1:59:0,59:0:0:59:2109:-190.077,-17.7608,0	0/1:242:105,137:105:3748:137:4900:-368.303,0,-264.672	1/1:110:0,110:0:0:110:3944:-355.151,-33.1133,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	0/1:194:77,117:77:2752:117:4149:-315.196,0,-189.523	1/1:97:0,97:0:0:97:3450:-310.711,-29.1999,0	1/1:96:0,96:0:0:96:3409:-306.919,-28.8989,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:177:97,80:97:3484:80:2864:-204.715,0,-260.488	0/1:67:35,32:35:1252:32:1140:-82.7402,0,-92.8161	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:136:67,69:67:2392:69:2480:-182.513,0,-174.597	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:69:0,69:0:0:69:2460:-221.655,-20.7711,0	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	0/1:121:69,52:69:2472:52:1868:-131.975,0,-186.309	0/1:56:24,32:24:864:32:1148:-86.7722,0,-61.2249	0/1:80:28,52:28:1004:52:1856:-143.237,0,-66.5935	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:95:0,95:0:0:95:3400:-306.215,-28.5979,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	.:.:.:.:.:.:.:.	0/1:14:5,9:5:172:9:324:-25.2914,0,-11.6036	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	1/1:68:0,68:0:0:68:2404:-216.615,-20.47,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:161:0,161:0:0:161:5748:-516.812,-48.4658,0	0/1:138:54,84:54:1928:84:3001:-228.779,0,-132.255	1/1:42:0,42:0:0:42:1492:-134.575,-12.6433,0	1/1:76:0,76:0:0:76:2712:-244.324,-22.8783,0	1/1:135:0,135:0:0:135:4824:-434.316,-40.6391,0	0/1:112:71,41:71:2532:41:1472:-99.0608,0,-194.416	1/1:33:0,33:0:0:33:1180:-106.507,-9.93399,0	0/1:41:19,22:19:676:22:792:-59.2634,0,-48.8142	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:64:14,50:14:496:50:1796:-142.656,0,-25.7083	0/1:110:44,66:44:1580:66:2376:-180.984,0,-109.378	1/1:119:0,119:0:0:119:4228:-380.703,-35.8226,0	0/1:106:46,60:46:1644:60:2148:-161.678,0,-116.339	0/1:80:36,44:36:1292:44:1576:-118.049,0,-92.5014	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:96:35,61:35:1252:61:2188:-168.287,0,-84.0862	0/1:140:57,83:57:2036:83:2968:-225.209,0,-141.368	0/1:224:109,115:109:3920:115:4109:-302.563,0,-285.56	0/1:61:27,34:27:968:34:1208:-90.6633,0,-69.0745	0/1:69:35,34:35:1256:34:1212:-88.6153,0,-92.5742	1/1:46:0,46:0:0:46:1634:-147.349,-13.8474,0	0/1:130:70,60:70:2504:60:2156:-155.173,0,-186.479	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:27:11,16:11:396:16:572:-43.6856,0,-27.8549	0/1:57:31,26:31:1089:26:927:-66.5887,0,-81.1586	0/1:66:45,21:45:1616:21:756:-48.4992,0,-125.862	1/1:120:0,120:0:0:120:4304:-387.536,-36.1236,0	1/1:115:0,115:0:0:115:4114:-370.444,-34.6185,0
chr01	32542646	.	C	T	42946.5	PASS	AB=0.501203;ABP=3.05732;AC=40;AF=0.217391;AN=184;AO=1888;CIGAR=1X;DP=7216;DPB=7216;DPRA=1.55334;EPP=3939.38;EPPR=11104;GTI=3;LEN=1;MEANALT=1;MQM=59.9227;MQMR=59.9677;NS=92;NUMALT=1;ODDS=0.17605;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67316;QR=189514;RO=5326;RPL=1045;RPP=49.9408;RPPR=147.836;RPR=843;RUN=1;SAF=1064;SAP=69.2586;SAR=824;SRF=3013;SRP=202.789;SRR=2313;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:244:138,106:138:4906:106:3770:-265.963,0,-368.232	0/0:87:87,0:87:3093:0:0:0,-26.1896,-278.597	0/0:86:86,0:86:3070:0:0:0,-25.8886,-276.528	0/1:49:23,26:23:824:26:924:-68.7272,0,-59.7328	0/1:36:25,11:25:900:11:396:-25.1457,0,-70.4839	0/1:64:28,36:28:999:36:1288:-96.9568,0,-70.9586	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.636	0/0:52:52,0:52:1843:0:0:0,-15.6536,-166.15	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/0:178:178,0:178:6354:0:0:0,-53.5833,-571.951	0/0:123:123,0:123:4358:0:0:0,-37.0267,-392.341	0/1:131:69,62:69:2447:62:2212:-159.904,0,-181.05	0/1:124:74,50:74:2629:50:1796:-124.595,0,-199.521	0/1:104:57,47:57:2048:47:1676:-119.82,0,-153.284	0/0:122:122,0:122:4344:0:0:0,-36.7257,-391.138	0/0:153:153,0:153:5436:0:0:0,-46.0576,-489.37	0/1:101:44,57:44:1568:57:2036:-153.107,0,-111.008	0/1:93:49,44:49:1756:44:1580:-114.496,0,-130.328	0/1:115:57,58:57:2030:58:2068:-151.771,0,-148.353	0/1:74:37,37:37:1320:37:1320:-96.8072,0,-96.8257	0/1:21:7,14:7:252:14:492:-38.2907,0,-16.7073	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:57:52,5:52:1830:5:180:0,-0.606645,-148.425	0/0:45:44,1:44:1572:1:36:0,-9.94807,-138.173	0/1:108:62,46:62:2220:46:1644:-115.737,0,-167.553	0/0:88:88,0:88:3124:0:0:0,-26.4906,-281.388	0/0:65:65,0:65:2304:0:0:0,-19.5669,-207.619	0/1:121:62,59:62:2220:59:2093:-152.178,0,-163.64	0/0:186:185,1:185:6595:1:36:0,-52.3933,-590.023	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:248:116,132:116:4112:132:4707:-349.136,0,-295.611	0/1:54:19,35:19:671:35:1241:-95.7369,0,-44.4602	0/1:133:68,65:68:2432:65:2332:-170.065,0,-179.099	.:.:.:.:.:.:.:.	0/1:70:41,29:41:1456:29:1036:-72.4818,0,-110.264	0/0:80:79,1:79:2827:1:36:0,-20.4841,-251.07	0/0:79:79,0:79:2781:0:0:0,-23.7814,-250.527	0/0:108:106,2:106:3771:2:72:0,-25.6745,-332.751	0/0:71:71,0:71:2510:0:0:0,-21.3731,-226.15	0/0:38:38,0:38:1340:0:0:0,-11.4391,-120.897	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.897	0/1:67:36,31:36:1270:31:1116:-80.5827,0,-94.4323	0/1:35:18,17:18:640:17:593:-43.1587,0,-47.3933	0/1:74:37,37:37:1324:37:1328:-97.546,0,-97.1859	0/1:73:38,35:38:1335:35:1250:-90.8295,0,-98.4739	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:92:92,0:92:3275:0:0:0,-27.6948,-294.965	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:77:77,0:77:2759:0:0:0,-23.1793,-248.551	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:181:181,0:181:6462:0:0:0,-54.4864,-581.634	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:73:42,31:42:1500:31:1101:-77.3778,0,-113.319	0/0:40:40,0:40:1410:0:0:0,-12.0412,-127.196	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/1:39:12,27:12:424:27:941:-73.2468,0,-26.7562	0/0:100:99,1:99:3513:1:36:0,-26.5047,-312.671	0/1:43:20,23:20:716:23:824:-61.539,0,-51.8234	0/0:151:151,0:151:5365:0:0:0,-45.4555,-482.985	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:27:16,11:16:572:11:396:-27.8549,0,-43.6856	0/1:51:24,27:24:855:27:960:-71.3637,0,-61.9176	0/0:79:78,0:78:2780:0:0:0,-23.4803,-250.11	0/1:83:41,42:41:1468:42:1508:-111.029,0,-107.431	0/1:69:34,35:34:1216:35:1237:-90.8612,0,-88.9755	0/0:68:68,0:68:2406:0:0:0,-20.47,-216.793	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:89:39,50:39:1381:50:1777:-133.42,0,-97.7951	0/1:50:20,30:20:712:30:1061:-80.7479,0,-49.3552	0/1:132:70,62:70:2492:62:2205:-158.978,0,-184.798	0/1:156:83,73:83:2944:73:2616:-188.727,0,-218.233	0/1:110:44,66:44:1571:66:2352:-178.825,0,-108.568	0/0:120:119,1:119:4207:1:36:0,-32.5253,-375.215	0/1:163:85,78:85:3018:78:2770:-200.473,0,-222.775	0/1:65:36,29:36:1284:29:1021:-72.6335,0,-96.2965	0/0:101:100,1:100:3550:1:36:0,-26.8058,-316.111	0/0:95:95,0:95:3399:0:0:0,-28.5978,-306.123	0/1:161:77,84:77:2716:84:2992:-221.034,0,-196.218	0/1:199:90,109:90:3218:109:3912:-292.367,0,-229.936	0/1:84:24,60:24:860:60:2133:-166.947,0,-52.4353	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:193:192,0:192:6826:0:0:0,-57.7978,-614.056
chr01	32542741	.	A	G	69216.7	PASS	AB=0.480529;ABP=24.6576;AC=40;AF=0.212766;AN=188;AO=3178;CIGAR=1X;DP=13420;DPB=13420;DPRA=1.33742;EPP=6895.27;EPPR=22204.2;GTI=2;LEN=1;MEANALT=1.09615;MQM=59.9242;MQMR=59.968;NS=94;NUMALT=1;ODDS=1.55698;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110818;QR=362252;RO=10236;RPL=1545;RPP=8.30164;RPPR=21.3469;RPR=1633;RUN=1;SAF=1546;SAP=8.06386;SAR=1632;SRF=4974;SRP=20.6061;SRR=5262;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1137:0:0:0,-9.93399,-102.63	0/1:185:91,94:91:3268:94:3311:-242.517,0,-238.646	0/0:284:284,0:284:9937:0:0:0,-85.4925,-894.287	0/0:319:319,0:319:11283:0:0:0,-96.0286,-1015.36	0/1:21:11,10:11:392:10:325:-23.2437,0,-29.2984	0/1:36:21,15:21:743:15:508:-35.2021,0,-56.3563	0/1:196:103,93:103:3651:93:3174:-226.851,0,-269.792	0/0:221:221,0:221:7834:0:0:0,-66.5276,-705.075	0/0:140:140,0:140:4994:0:0:0,-42.1442,-449.477	0/0:140:140,0:140:4971:0:0:0,-42.1442,-447.537	0/0:111:111,0:111:3914:0:0:0,-33.4143,-352.453	0/0:155:154,1:154:5361:1:36:0,-43.0614,-479.03	0/1:156:81,75:81:2870:75:2585:-185.913,0,-211.577	0/1:117:59,58:59:2072:58:2013:-146.22,0,-151.528	0/1:161:77,84:77:2743:84:2922:-214.751,0,-198.647	0/0:137:137,0:137:4852:0:0:0,-41.2411,-436.815	0/0:126:126,0:126:4485:0:0:0,-37.9298,-403.82	0/1:94:45,49:45:1603:49:1724:-127.148,0,-116.263	0/1:75:44,31:44:1559:31:1079:-74.8358,0,-118.024	0/1:237:128,108:128:4535:108:3786:-269.539,0,-336.914	0/1:223:138,84:138:4860:84:2945:-198.091,0,-370.366	0/1:73:29,44:29:1040:44:1527:-115.743,0,-71.9392	0/0:142:141,1:141:4956:1:36:0,-39.148,-442.591	0/0:112:109,3:109:3878:3:108:0,-23.6402,-339.14	0/0:74:74,0:74:2625:0:0:0,-22.2762,-236.495	0/1:331:170,160:170:6072:160:5579:-402.528,0,-446.882	0/0:416:416,0:416:14710:0:0:0,-125.228,-1323.58	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/1:323:172,151:172:6068:151:5239:-374.391,0,-448.994	0/0:165:164,1:164:5835:1:36:0,-46.0717,-521.665	0/0:136:136,0:136:4761:0:0:0,-40.9401,-428.63	0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4406	0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8116	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:34:34,0:34:1187:0:0:0,-10.235,-107.134	0/1:426:208,217:208:7408:217:7582:-554.134,0,-538.471	0/1:127:46,81:46:1652:81:2810:-214.907,0,-110.608	0/1:127:68,59:68:2431:59:2087:-149.782,0,-180.814	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/1:303:169,134:169:5998:134:4658:-328.174,0,-448.714	0/0:68:68,0:68:2407:0:0:0,-20.47,-216.884	0/0:192:192,0:192:6838:0:0:0,-57.7978,-615.486	0/0:147:147,0:147:5210:0:0:0,-44.2514,-469.041	0/0:129:129,0:129:4497:0:0:0,-38.8329,-404.905	0/0:126:126,0:126:4503:0:0:0,-37.9298,-405.434	0/0:133:133,0:133:4677:0:0:0,-40.037,-421.093	0/1:215:139,76:139:4932:76:2672:-176.004,0,-379.311	0/1:102:60,42:60:2139:42:1492:-103.869,0,-162.07	0/1:206:121,85:121:4267:85:2964:-204.979,0,-322.197	0/1:183:104,79:104:3708:79:2768:-194.271,0,-278.832	0/0:10:10,0:10:338:0:0:0,-3.0103,-30.746	0/0:145:144,1:144:5117:1:36:0,-40.0511,-457.069	0/0:104:103,1:103:3570:1:32:0,-28.1078,-318.307	0/0:23:23,0:23:807:0:0:0,-6.92369,-72.9492	0/0:195:195,0:195:6895:0:0:0,-58.7008,-620.564	0/0:67:67,0:67:2363:0:0:0,-20.169,-212.926	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:33:17,16:17:604:16:576:-42.241,0,-44.7557	0/0:143:143,0:143:5042:0:0:0,-43.0473,-453.906	0/0:183:182,1:182:6425:1:36:0,-51.4902,-574.747	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:235:235,0:235:8327:0:0:0,-70.742,-749.408	0/1:213:122,91:122:4342:91:3186:-222.473,0,-326.837	0/0:92:91,1:91:3202:1:32:0,-24.4954,-285.2	0/0:106:105,1:105:3691:1:36:0,-28.3109,-328.795	0/0:191:187,4:187:6649:4:144:0,-44.1831,-585.176	0/1:164:51,113:51:1819:113:4007:-311.443,0,-114.604	0/0:80:80,0:80:2831:0:0:0,-24.0824,-255.03	0/1:114:62,52:62:2163:52:1830:-130.662,0,-160.617	0/0:133:132,1:132:4719:1:36:0,-36.4387,-421.215	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:96:42,54:42:1477:54:1896:-142.015,0,-104.323	0/1:132:56,76:56:1971:76:2674:-201.168,0,-137.856	0/0:267:266,0:266:9450:0:0:0,-80.074,-850.254	0/1:262:140,121:140:4958:121:4223:-301.404,0,-367.521	0/1:54:30,24:30:1076:24:840:-59.6598,0,-80.8972	0/0:211:211,0:211:7520:0:0:0,-63.5173,-676.843	0/0:17:17,0:17:574:0:0:0,-5.11751,-51.976	0/1:185:96,89:96:3388:89:3100:-223.533,0,-249.415	0/1:146:91,55:91:3238:55:1880:-125.521,0,-247.691	0/1:251:126,125:126:4452:125:4396:-320.257,0,-325.294	0/1:178:92,86:92:3291:86:3000:-216.519,0,-242.825	0/1:121:58,63:58:2057:63:2170:-159.14,0,-148.975	0/0:124:124,0:124:4412:0:0:0,-37.3277,-397.208	0/1:283:141,142:141:5013:142:4935:-359.11,0,-366.127	0/1:66:46,20:46:1617:20:695:-43.0034,0,-125.949	0/0:157:157,0:157:5572:0:0:0,-47.2617,-501.606	0/0:146:146,0:146:5149:0:0:0,-43.9504,-463.556	0/1:64:30,34:30:1040:34:1131:-82.7981,0,-74.6406	0/1:152:70,82:70:2486:82:2859:-211.793,0,-178.236	0/1:143:56,87:56:2003:87:3003:-227.454,0,-137.496	0/0:265:262,3:262:9203:3:99:0,-70.5364,-818.996	0/0:252:252,0:252:8851:0:0:0,-75.8596,-796.582
chr01	32546719	.	C	T	30320.9	PASS	AB=0.514698;ABP=9.77643;AC=41;AF=0.218085;AN=188;AO=1862;CIGAR=1X;DP=6419;DPB=6419;DPRA=1.89811;EPP=4046.29;EPPR=9872.35;GTI=7;LEN=1;MEANALT=1.06667;MQM=45.6418;MQMR=58.6119;NS=94;NUMALT=1;ODDS=1.0664;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66501;QR=162173;RO=4545;RPL=0;RPP=4046.29;RPPR=9872.35;RPR=1862;RUN=1;SAF=1862;SAP=4046.29;SAR=0;SRF=4545;SRP=9872.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.261	0/1:106:49,57:49:1756:57:2048:-146.699,0,-125.811	0/0:233:233,0:233:8327:0:0:0,-70.14,-748.432	0/0:153:152,1:152:5424:1:36:0,-42.4908,-484.279	0/1:48:20,28:20:720:28:1008:-74.8568,0,-50.6678	0/1:31:16,15:16:568:15:536:-38.2755,0,-42.1068	0/1:105:59,46:59:2112:46:1637:-113.893,0,-158.554	0/0:112:112,0:112:3999:0:0:0,-33.7154,-359.605	0/0:33:33,0:33:1166:0:0:0,-9.93399,-105.174	0/0:76:74,0:74:2628:0:0:0,-22.2762,-236.261	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.6382	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.347	0/1:67:23,43:23:824:43:1540:-115.223,0,-54.2435	0/1:53:28,25:28:983:25:892:-63.2892,0,-72.828	0/1:45:18,27:18:648:27:947:-70.7913,0,-45.1055	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.2292	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.7	0/1:42:23,19:23:828:19:675:-47.123,0,-62.111	0/1:25:11,14:11:396:14:504:-37.1545,0,-28.4455	0/1:145:83,62:83:2953:62:2197:-151.373,0,-222.15	0/1:84:37,47:37:1304:47:1668:-122.147,0,-91.8971	0/1:115:42,73:42:1504:73:2598:-197.337,0,-100.943	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.206	0/0:88:87,1:87:3116:1:36:0,-22.8924,-276.936	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.493	0/1:250:131,118:131:4682:118:4228:-301.203,0,-346.303	0/0:104:102,0:102:3626:0:0:0,-30.7051,-325.656	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.2562	0/1:162:95,67:95:3386:67:2404:-166.476,0,-256.14	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.142	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:2:1,1:1:36:1:36:-2.91895,0,-2.99521	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.785	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.785	0/1:150:69,81:69:2468:81:2899:-213.682,0,-177.073	0/1:171:76,95:76:2716:95:3416:-251.697,0,-192.713	0/1:24:7,17:7:243:17:604:-45.7971,0,-14.9724	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:95:48,47:48:1711:47:1680:-119.15,0,-125.169	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.2918	0/0:93:93,0:93:3315:0:0:0,-27.9958,-298.248	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.232	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.218	0/0:56:56,0:56:1986:0:0:0,-16.8577,-179.013	0/0:72:72,0:72:2567:0:0:0,-21.6742,-230.665	0/1:105:44,61:44:1568:61:2192:-163.678,0,-109.671	0/1:102:27,75:27:972:75:2688:-207.925,0,-57.0709	0/1:99:53,46:53:1908:46:1652:-117.128,0,-142.137	0/1:119:61,58:61:2172:58:2038:-146.257,0,-159.903	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:151:150,1:150:5388:1:32:0,-42.2887,-479.948	0/0:40:40,0:40:1431:0:0:0,-12.0412,-128.716	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2394	0/0:68:64,0:64:2271:0:0:0,-19.2659,-204.1	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:10:3,7:3:108:7:252:-19.9264,0,-7.06487	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.565	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.001	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.374	0/1:152:66,86:66:2364:86:3084:-227.387,0,-166.862	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.505	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3012	0/0:81:77,3:77:2732:3:108:0,-15.1535,-236.75	0/1:83:30,53:30:1067:53:1904:-144.762,0,-71.3511	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:61:37,24:37:1319:24:864:-57.7945,0,-100.606	0/0:80:80,0:80:2851:0:0:0,-24.0824,-256.757	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.2061	0/1:98:45,53:45:1587:53:1865:-134.871,0,-113.503	0/1:29:13,16:13:468:16:576:-42.3248,0,-33.6472	0/0:114:114,0:114:4042:0:0:0,-34.3174,-363.683	0/1:123:58,65:58:2080:65:2313:-169.248,0,-150.413	0/1:154:88,66:88:3131:66:2364:-160.533,0,-235.447	0/0:57:56,0:56:1986:0:0:0,-16.8577,-178.407	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3099	0/1:52:28,24:28:989:24:852:-59.8997,0,-73.5977	0/1:121:78,43:78:2770:43:1536:-98.0929,0,-212.554	0/1:191:90,101:90:3232:101:3562:-259.415,0,-233.408	0/1:77:30,47:30:1076:47:1675:-125.711,0,-73.9722	0/1:32:21,11:21:739:11:396:-25.905,0,-57.176	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.796	0/1:102:50,52:50:1783:52:1872:-134.476,0,-130.047	0/1:35:18,17:18:640:17:603:-42.0831,0,-47.3798	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.057	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.367	0/1:24:18,6:18:639:6:216:-12.2921,0,-50.546	0/1:74:41,33:41:1472:33:1188:-82.5774,0,-110.329	0/1:43:13,30:13:468:30:1080:-83.4121,0,-29.4976	0/0:58:58,0:58:2079:0:0:0,-17.4597,-187.351	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.726
chr01	32722881	.	A	C	358134	PASS	AB=0.595413;ABP=1154.55;AC=133;AF=0.707447;AN=188;AO=16400;CIGAR=1X;DP=24565;DPB=24565;DPRA=0;EPP=35615.2;EPPR=17711.4;GTI=54;LEN=1;MEANALT=1.09574;MQM=40.4836;MQMR=10.097;NS=94;NUMALT=1;ODDS=77.6321;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=584726;QR=291552;RO=8155;RPL=0;RPP=35615.2;RPPR=17711.4;RPR=16400;RUN=1;SAF=16400;SAP=35615.2;SAR=0;SRF=8155;SRP=17711.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:76:30,46:30:1065:46:1656:-121.235,0,-4.16894	1/1:327:97,230:97:3435:230:8227:-626.897,-11.2049,0	0/1:391:142,249:142:5089:249:8837:-649.788,0,-10.043	1/1:298:95,203:95:3401:203:7251:-539.317,-4.21836,0	0/1:231:104,127:104:3732:127:4528:-325.18,0,-24.0662	0/1:180:78,102:78:2804:102:3654:-264.059,0,-16.2241	0/1:356:147,209:147:5276:209:7456:-536.202,0,-25.188	0/1:722:261,461:261:9334:461:16395:-1210.34,0,-19.8061	1/1:106:22,84:22:792:84:2980:-239.464,-12.0287,0	0/1:283:116,167:116:4149:167:5963:-429.704,0,-19.3555	0/1:266:116,150:116:4149:150:5354:-382.923,0,-24.2934	1/1:127:33,94:33:1188:94:3354:-262.473,-8.46003,0	1/1:144:42,102:42:1512:102:3656:-280.586,-5.48549,0	0/1:382:153,227:153:5496:227:8050:-585.204,0,-22.9292	1/1:101:21,80:21:756:80:2864:-224.545,-11.4227,0	0/1:145:64,81:64:2273:81:2869:-206.092,0,-14.1424	0/1:297:141,156:141:5053:156:5567:-395.764,0,-37.4408	1/1:180:46,134:46:1648:134:4795:-376.022,-12.7288,0	1/1:154:32,122:32:1144:122:4344:-348.579,-17.4896,0	1/1:862:258,603:258:9226:603:21517:-1626.15,-27.522,0	0/1:363:130,233:130:4638:233:8307:-610.474,0,-9.89044	1/1:123:23,100:23:805:100:3538:-282.254,-15.2542,0	1/1:61:19,42:19:684:42:1508:-113.506,-1.1797,0	0/1:336:144,191:144:5153:191:6810:-489.106,0,-30.3638	0/1:157:51,106:51:1813:106:3775:-281.739,0,-0.920863	1/1:543:153,390:153:5461:390:13964:-1064.68,-24.8495,0	0/1:670:250,420:250:8885:420:14930:-1097.08,0,-24.3669	0/1:80:36,44:36:1292:44:1562:-112.38,0,-9.27843	0/1:601:219,382:219:7838:382:13650:-998.818,0,-16.03	1/1:300:82,218:82:2906:218:7777:-601.283,-15.2162,0	0/1:224:101,123:101:3621:123:4388:-311.627,0,-23.4539	0/1:15:7,8:7:252:8:288:-20.8936,0,-1.87827	1/1:73:23,49:23:824:49:1752:-132.075,-1.23362,0	0/1:15:5,10:5:176:10:360:-27.0742,0,-0.0786786	0/1:33:17,16:17:612:16:568:-40.086,0,-5.45091	0/1:40:16,24:16:576:24:860:-63.1054,0,-2.44458	1/1:375:101,274:101:3609:274:9778:-752.84,-21.1134,0	1/1:906:133,773:133:4750:773:27549:-2268.9,-151.778,0	0/1:271:114,157:114:4092:157:5627:-401.863,0,-22.2544	0/1:5:2,3:2:72:3:104:-7.93078,0,-0.392987	0/1:396:161,235:161:5745:235:8358:-606.224,0,-25.7016	1/1:143:47,96:47:1684:96:3444:-255.642,-0.691539,0	0/1:338:120,218:120:4293:218:7767:-570.656,0,-6.21572	0/1:134:63,71:63:2241:71:2519:-177.847,0,-16.3761	0/1:128:48,80:48:1724:80:2841:-205.51,0,-4.72436	1/1:107:33,74:33:1188:74:2636:-198.608,-2.43943,0	1/1:201:43,158:43:1521:158:5623:-451.493,-21.7753,0	0/1:406:167,238:167:5924:238:8471:-609.872,0,-27.8776	0/1:190:85,105:85:3029:105:3741:-266.275,0,-19.2977	1/1:1049:122,927:122:4380:927:33024:-2737.88,-205.992,0	0/1:412:166,246:166:5922:246:8802:-636.759,0,-25.2688	1/1:55:18,37:18:644:37:1320:-97.1779,-0.273974,0	0/1:418:165,253:165:5920:253:9084:-664.626,0,-22.7069	0/1:207:102,105:102:3652:105:3741:-259.382,0,-29.49	1/1:39:2,37:2:72:37:1320:-113.289,-9.84203,0	0/1:291:104,187:104:3672:187:6631:-489.064,0,-6.99672	1/1:34:7,27:7:252:27:972:-77.8075,-3.8413,0	1/1:30:6,24:6:216:24:856:-69.0334,-3.53629,0	0/1:54:20,34:20:712:34:1212:-88.8745,0,-1.82395	0/1:271:131,139:131:4700:139:4963:-349.472,0,-36.7029	1/1:347:87,260:87:3113:260:9297:-723.68,-26.1618,0	1/1:41:10,31:10:341:31:1088:-85.1147,-3.2789,0	1/1:220:58,161:58:2084:161:5738:-442.025,-12.6959,0	0/1:532:241,291:241:8621:291:10368:-735.398,0,-58.6717	1/1:772:117,655:117:4174:655:23381:-1923.78,-123.834,0	0/1:260:108,152:108:3868:152:5404:-388.733,0,-18.9301	1/1:245:66,179:66:2357:179:6396:-492.521,-14.3382,0	0/1:372:151,221:151:5386:221:7884:-567.081,0,-25.0625	1/1:145:32,113:32:1152:113:4042:-322.87,-14.7777,0	0/1:241:86,154:86:3058:154:5460:-402.981,0,-11.4185	0/1:351:151,200:151:5412:200:7171:-512.314,0,-30.2869	1/1:70:18,52:18:633:52:1840:-143.483,-4.81435,0	0/1:194:75,119:75:2666:119:4208:-308.341,0,-9.08026	0/1:134:63,71:63:2245:71:2520:-178.645,0,-16.3775	0/1:463:205,258:205:7357:258:9155:-654.524,0,-45.9051	1/1:293:54,239:54:1932:239:8504:-686.711,-39.5535,0	0/1:432:146,286:146:5229:286:10190:-757.23,0,-2.70075	1/1:341:75,266:75:2677:266:9511:-754.285,-34.1355,0	0/1:45:15,30:15:536:30:1076:-80.4185,0,-0.0389721	1/1:205:51,154:51:1824:154:5460:-427.333,-15.7603,0	0/1:307:124,183:124:4437:183:6488:-470.784,0,-19.2339	0/1:567:200,367:200:7157:367:13094:-959.892,0,-9.20393	1/1:198:50,148:50:1796:148:5271:-405.79,-12.0948,0	0/1:187:74,113:74:2656:113:4017:-291.455,0,-10.3393	0/1:166:71,95:71:2556:95:3403:-244.317,0,-13.9663	1/1:239:59,180:59:2116:180:6420:-498.119,-18.801,0	0/1:103:43,60:43:1544:60:2148:-156.277,0,-7.75453	1/1:128:39,89:39:1404:89:3184:-241.657,-3.27636,0	0/1:138:62,76:62:2217:76:2732:-196.545,0,-14.3668	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chr01	32722895	.	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chr01	32759389	.	A	G	25459.8	PASS	AB=0.451826;ABP=73.0976;AC=44;AF=0.234043;AN=188;AO=1572;CIGAR=1X;DP=6796;DPB=6796;DPRA=1.24324;EPP=3399.22;EPPR=11333.8;GTI=1;LEN=1;MEANALT=1.04651;MQM=59.6336;MQMR=59.9701;NS=94;NUMALT=1;ODDS=3.96933;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56166;QR=187277;RO=5222;RPL=2;RPP=3399.22;RPPR=11333.8;RPR=1570;RUN=1;SAF=1572;SAP=3416.56;SAR=0;SRF=5222;SRP=11342.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:30:19,11:19:669:11:396:-26.9472,0,-51.503	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/0:107:107,0:107:3844:0:0:0,-32.2102,-345.965	0/1:65:33,32:33:1188:32:1141:-83.4245,0,-87.6616	0/1:46:19,27:19:669:27:953:-72.2359,0,-46.6866	0/1:47:23,24:23:828:24:850:-62.6696,0,-60.6957	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.873	0/1:85:52,33:52:1872:33:1184:-81.2622,0,-143.172	0/0:91:91,0:91:3276:0:0:0,-27.3937,-295.055	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/1:74:37,37:37:1328:37:1324:-97.167,0,-97.546	0/1:60:26,34:26:936:34:1201:-90.3014,0,-66.493	0/1:64:32,32:32:1152:32:1148:-84.3639,0,-84.7242	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:41:18,23:18:648:23:824:-62.1411,0,-46.3097	0/1:32:14,18:14:504:18:644:-48.6576,0,-36.0651	0/1:121:83,38:83:2988:38:1349:-85.2752,0,-232.726	0/1:103:65,38:65:2317:38:1364:-92.0484,0,-177.783	0/1:102:45,57:45:1620:57:2018:-151.162,0,-115.385	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/0:162:162,0:162:5790:0:0:0,-48.7669,-521.212	0/1:183:101,82:101:3628:82:2927:-208.358,0,-271.636	0/0:223:223,0:223:7989:0:0:0,-67.1297,-719.029	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:199:115,84:115:4109:84:2994:-209.784,0,-310.079	0/0:102:102,0:102:3653:0:0:0,-30.7051,-328.972	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.3026	0/1:172:86,86:86:3088:86:3088:-226.315,0,-226.37	0/1:153:104,49:104:3736:49:1760:-112.626,0,-290.382	0/1:47:27,20:27:972:20:716:-50.6193,0,-73.6495	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:56:27,29:27:968:29:1040:-77.0567,0,-70.5797	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:137:137,0:137:4924:0:0:0,-41.2411,-443.308	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:123:123,0:123:4382:0:0:0,-37.0267,-394.552	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:119:50,69:50:1800:69:2484:-187.776,0,-126.46	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.287	0/1:73:35,38:35:1256:38:1368:-101.439,0,-91.3701	0/1:142:106,36:106:3812:36:1288:-73.4773,0,-300.523	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:88:88,0:88:3168:0:0:0,-26.4906,-285.214	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.427	0/0:102:102,0:102:3657:0:0:0,-30.7051,-329.331	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:130:130,0:130:4631:0:0:0,-39.1339,-416.95	0/1:130:80,50:80:2838:50:1783:-121.582,0,-216.522	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.154	0/1:119:52,67:52:1868:67:2389:-179.435,0,-132.577	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:58:32,26:32:1144:26:921:-65.7413,0,-85.8098	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:135:87,48:87:3120:48:1716:-114.068,0,-240.387	0/1:81:56,25:56:2008:25:885:-55.5831,0,-156.61	0/0:125:125,0:125:4481:0:0:0,-37.6287,-403.457	0/1:110:46,64:46:1652:64:2287:-172.971,0,-115.855	0/1:90:52,37:52:1868:37:1317:-91.4789,0,-141.248	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:47:26,21:26:913:21:756:-54.2019,0,-68.3356	0/1:61:24,37:24:860:37:1298:-98.7248,0,-59.3588	0/1:144:91,52:91:3268:52:1842:-122.649,0,-250.932	0/1:48:19,29:19:684:29:1044:-79.809,0,-47.4409	0/1:47:29,18:29:1044:18:648:-44.5035,0,-80.1264	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:135:71,64:71:2556:64:2303:-166.867,0,-189.651	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:39:20,19:20:720:19:684:-50.144,0,-53.3886	0/1:106:54,52:54:1940:52:1864:-136.124,0,-142.967	0/1:62:20,42:20:716:42:1508:-117.342,0,-46.1039	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.128	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937
chr01	32759412	.	C	T	107931	PASS	AB=0.543819;ABP=60.4819;AC=144;AF=0.765957;AN=188;AO=5127;CIGAR=1X;DP=6702;DPB=6702;DPRA=72.0538;EPP=11118.8;EPPR=3416.56;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9672;MQMR=59.6628;NS=94;NUMALT=1;ODDS=4.58259;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183234;QR=56039;RO=1572;RPL=5125;RPP=11118.8;RPPR=3416.56;RPR=2;RUN=1;SAF=5127;SAP=11136.1;SAR=0;SRF=1572;SRP=3416.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:29:10,18:10:360:18:644:-49.5025,0,-23.9561	1/1:106:0,106:0:0:106:3796:-341.838,-31.9092,0	1/1:105:0,105:0:0:105:3738:-336.583,-31.6082,0	0/1:64:32,32:32:1148:32:1152:-84.7242,0,-84.3515	0/1:44:25,19:25:900:19:680:-48.2838,0,-68.0757	0/1:47:24,23:24:860:23:819:-59.8832,0,-63.5672	1/1:97:0,97:0:0:97:3453:-310.98,-29.1999,0	0/1:85:33,52:33:1180:52:1868:-142.812,0,-80.8756	1/1:89:0,89:0:0:89:3173:-285.793,-26.7917,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:78:0,78:0:0:78:2786:-250.981,-23.4803,0	0/1:74:37,37:37:1328:37:1326:-97.3661,0,-97.5226	0/1:61:34,27:34:1208:27:959:-68.258,0,-90.6	0/1:62:32,30:32:1152:30:1067:-77.6774,0,-85.3263	1/1:55:0,55:0:0:55:1978:-178.295,-16.5567,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:41:23,18:23:820:18:648:-46.3097,0,-61.7803	0/1:31:17,14:17:608:14:500:-36.0042,0,-45.7201	0/1:121:39,82:39:1364:82:2931:-227.594,0,-86.6196	0/1:99:36,63:36:1275:63:2260:-173.856,0,-85.2441	0/1:101:58,43:58:2076:43:1527:-107.318,0,-156.69	1/1:67:0,67:0:0:67:2399:-216.166,-20.169,0	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	1/1:161:0,161:0:0:161:5758:-518.335,-48.4658,0	0/1:179:79,100:79:2798:100:3575:-268.073,0,-198.142	1/1:215:0,215:0:0:215:7697:-692.762,-64.7215,0	1/1:36:0,36:0:0:36:1273:-114.871,-10.8371,0	0/1:197:83,113:83:2980:113:4017:-302.442,0,-209.16	1/1:96:0,96:0:0:96:3427:-308.644,-28.8989,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:10:0,10:0:0:10:341:-31.0178,-3.0103,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:15:0,15:0:0:15:520:-47.1019,-4.51545,0	0/1:170:86,84:86:3047:84:2999:-218.966,0,-223.228	0/1:153:50,103:50:1800:103:3660:-283.547,0,-116.225	0/1:46:20,26:20:697:26:932:-70.3515,0,-49.2033	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:58:31,27:31:1078:27:960:-69.2565,0,-79.8646	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	1/1:133:0,133:0:0:133:4769:-429.366,-40.037,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:49:0,49:0:0:49:1741:-156.972,-14.7505,0	1/1:120:0,120:0:0:120:4300:-387.177,-36.1236,0	1/1:94:0,94:0:0:94:3350:-301.715,-28.2968,0	0/1:121:71,50:71:2541:50:1783:-124.327,0,-192.289	1/1:93:0,93:0:0:93:3331:-300.004,-27.9958,0	0/1:74:39,35:39:1395:35:1260:-91.4293,0,-103.566	0/1:141:36,105:36:1281:105:3776:-297.586,0,-73.146	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:85:0,85:0:0:85:3039:-273.61,-25.5876,0	1/1:40:0,40:0:0:40:1421:-128.185,-12.0412,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:75:0,75:0:0:75:2698:-243.064,-22.5773,0	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:66:0,66:0:0:66:2349:-211.66,-19.868,0	1/1:100:1,99:1:36:99:3556:-316.649,-26.5047,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:128:0,128:0:0:128:4588:-413.084,-38.5318,0	0/1:129:49,80:49:1730:80:2880:-220.603,0,-117.107	1/1:56:0,56:0:0:56:1997:-180.003,-16.8577,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:91:0,91:0:0:91:3260:-293.598,-27.3937,0	0/1:119:67,52:67:2392:52:1864:-132.217,0,-179.701	1/1:44:0,44:0:0:44:1564:-141.052,-13.2453,0	0/1:55:26,29:26:936:29:1035:-76.9071,0,-67.9936	1/1:46:0,46:0:0:46:1646:-148.428,-13.8474,0	1/1:28:0,28:0:0:28:989:-89.322,-8.42884,0	0/1:135:50,85:50:1787:85:3028:-232.11,0,-120.454	0/1:80:25,55:25:888:55:1959:-152.502,0,-56.1566	1/1:125:0,125:0:0:125:4452:-400.85,-37.6288,0	0/1:109:64,45:64:2283:45:1611:-112.467,0,-172.919	0/1:89:37,52:37:1320:52:1835:-138.638,0,-92.1512	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:46:21,25:21:756:25:900:-67.4736,0,-54.503	0/1:62:37,25:37:1332:25:891:-61.8445,0,-101.486	0/1:140:51,89:51:1823:89:3192:-245.359,0,-122.206	0/1:48:30,18:30:1038:18:648:-44.2024,0,-79.2593	0/1:46:18,28:18:639:28:987:-75.2957,0,-43.9909	1/1:28:0,27:0:0:27:968:-87.0776,-8.12781,0	0/1:134:64,70:64:2280:70:2512:-185.994,0,-165.097	0/1:23:13,10:13:459:10:351:-25.003,0,-34.7204	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	1/1:72:0,72:0:0:72:2564:-231.011,-21.6742,0	0/1:38:18,20:18:644:20:720:-53.6896,0,-46.8453	0/1:103:52,51:52:1860:51:1828:-133.795,0,-136.667	0/1:63:43,20:43:1544:20:716:-45.8028,0,-120.279	1/1:77:0,77:0:0:77:2763:-248.91,-23.1793,0	1/1:93:0,93:0:0:93:3312:-298.297,-27.9958,0
chr01	32759509	.	T	C	150084	PASS	AB=0.501724;ABP=3.14508;AC=143;AF=0.777174;AN=184;AO=7198;CIGAR=1X;DP=9815;DPB=9815;DPRA=0;EPP=15633.3;EPPR=5672.72;GTI=4;LEN=1;MEANALT=1.06522;MQM=59.9637;MQMR=59.9709;NS=92;NUMALT=1;ODDS=0.789355;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257350;QR=90737;RO=2611;RPL=7198;RPP=15633.3;RPPR=5672.72;RPR=0;RUN=1;SAF=0;SAP=15633.3;SAR=7198;SRF=0;SRP=5672.72;SRR=2611;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:133:62,71:62:2165:71:2521:-187.104,0,-155.079	1/1:147:0,147:0:0:147:5268:-474.256,-44.2514,0	1/1:260:0,260:0:0:260:9297:-836.694,-78.2678,0	0/1:152:60,92:60:2101:92:3288:-250.382,0,-143.602	0/1:59:30,29:30:1052:29:1040:-76.1536,0,-77.2297	0/1:109:62,47:62:2109:47:1688:-119.395,0,-157.263	1/1:202:0,202:0:0:202:7210:-648.764,-60.8081,0	0/1:82:44,38:44:1532:38:1353:-97.3839,0,-113.487	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:81:0,80:0:0:80:2860:-257.278,-24.0824,0	0/1:64:35,29:35:1220:29:1026:-73.3867,0,-90.8375	0/1:62:34,28:34:1178:28:1004:-72.012,0,-87.6564	0/1:55:35,20:35:1221:20:716:-48.2111,0,-93.6348	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:92:0,92:0:0:92:3296:-296.859,-27.6948,0	0/1:53:25,28:25:865:28:1004:-74.7189,0,-62.2073	0/1:37:15,22:15:528:22:792:-60.4676,0,-36.7133	0/1:204:89,115:89:3094:115:4121:-309.663,0,-217.281	0/1:133:63,70:63:2213:70:2512:-186.295,0,-159.388	0/1:202:142,60:142:4971:60:2160:-133.753,0,-386.71	1/1:90:0,90:0:0:90:3217:-289.751,-27.0927,0	1/1:117:8,109:8:280:109:3920:-327.452,-9.68121,0	1/1:58:0,57:0:0:57:2048:-184.232,-17.1587,0	0/1:427:223,204:223:7763:204:7278:-526.488,0,-570.185	1/1:150:0,150:0:0:150:5376:-483.971,-45.1545,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:283:140,143:140:4787:143:5140:-377.548,0,-345.808	1/1:196:0,195:0:0:195:6924:-622.867,-58.7009,0	1/1:136:0,136:0:0:136:4861:-437.642,-40.9401,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	0/1:187:72,115:72:2510:115:4123:-314.96,0,-169.859	0/1:213:98,115:98:3406:115:4120:-306.836,0,-242.64	0/1:58:34,24:34:1193:24:864:-60.6228,0,-90.2101	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:195:91,104:91:3197:104:3720:-276.301,0,-229.255	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:143:0,143:0:0:143:5057:-455.273,-43.0473,0	1/1:71:0,70:0:0:70:2504:-225.253,-21.0721,0	1/1:77:0,77:0:0:77:2745:-247.291,-23.1793,0	1/1:107:0,107:0:0:107:3805:-342.648,-32.2102,0	1/1:168:0,168:0:0:168:6005:-540.553,-50.573,0	0/1:216:110,106:110:3822:106:3797:-276.903,0,-279.162	1/1:116:0,116:0:0:116:4153:-373.938,-34.9195,0	0/1:148:70,78:70:2417:78:2789:-206.696,0,-173.218	0/1:164:98,66:98:3330:66:2359:-163.199,0,-250.553	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:172:1,171:1:21:171:6098:-546.821,-49.6772,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	1/1:140:0,140:0:0:140:4990:-449.242,-42.1442,0	1/1:49:0,49:0:0:49:1750:-157.783,-14.7505,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:89:1,88:1:36:88:3141:-279.317,-23.1934,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:285:0,285:0:0:285:10187:-916.752,-85.7936,0	0/1:252:111,141:111:3889:141:5044:-378.241,0,-274.351	1/1:92:0,92:0:0:92:3296:-296.859,-27.6948,0	1/1:106:0,106:0:0:106:3785:-340.848,-31.9092,0	1/1:191:0,191:0:0:191:6821:-613.961,-57.4967,0	0/1:73:47,26:47:1656:26:936:-62.5843,0,-127.352	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:76:48,28:48:1646:28:1004:-67.7976,0,-125.545	1/1:77:0,77:0:0:77:2753:-248.009,-23.1793,0	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	0/1:107:57,50:57:1935:50:1792:-129.352,0,-142.212	0/1:65:33,32:33:1161:32:1148:-84.0629,0,-85.2278	1/1:125:0,125:0:0:125:4472:-402.021,-37.6288,0	0/1:183:85,98:85:2887:98:3486:-258.858,0,-204.981	0/1:162:61,101:61:2132:101:3594:-274.898,0,-143.383	1/1:146:0,145:0:0:145:5163:-464.448,-43.6494,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:152:67,85:67:2348:85:3056:-229.507,0,-165.825	0/1:139:60,79:60:2112:79:2813:-211.565,0,-148.507	0/1:224:119,105:119:4085:105:3749:-270.178,0,-300.414	0/1:101:59,42:59:2070:42:1494:-104.348,0,-156.161	0/1:66:35,31:35:1232:31:1116:-80.8837,0,-91.3161	1/1:102:0,102:0:0:102:3664:-329.963,-30.7051,0	0/1:144:67,77:67:2361:77:2756:-204.934,0,-169.4	0/1:39:25,14:25:880:14:504:-33.9579,0,-67.7743	1/1:87:0,87:0:0:87:3128:-281.322,-26.1896,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	0/1:35:14,21:14:496:21:748:-57.1092,0,-34.4382	0/1:80:35,45:35:1232:45:1612:-121.288,0,-87.1016	0/1:65:40,25:40:1388:25:888:-60.6721,0,-105.65	1/1:142:0,141:0:0:141:5036:-451.837,-42.4452,0	1/1:99:0,99:0:0:99:3533:-318.178,-29.802,0
chr01	32759529	.	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chr01	32759579	.	CGAC	TGAA,CGAA	564451	PASS	AB=0.477433,0.519958;ABP=53.8765,42.7953;AC=146,42;AF=0.776596,0.223404;AN=188;AO=14997,6012;CIGAR=1X2M1X,3M1X;DP=21061;DPB=21067;DPRA=0,1.46648;EPP=32542.5,13049.2;EPPR=5.18177;GTI=6;LEN=4,1;MEANALT=2.10638,2.46667;MQM=53.1177,59.8541;MQMR=60;NS=94;NUMALT=2;ODDS=2.06848;PAIRED=0,0;PAIREDR=0;PAO=24,0;PQA=813,0;PQR=0;PRO=0;QA=527455,214354;QR=23;RO=1;RPL=7955,3200;RPP=123.706,57.3852;RPPR=5.18177;RPR=7042,2812;RUN=1,1;SAF=7954,3199;SAP=123.178,56.8261;SAR=7043,2813;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:68:0,68,0:0:0:68,0:2376,0:-213.101,-20.47,0,-213.101,-20.47,-213.101	1/2:382:0,188,194:0:0:188,194:6649,6925:-1102.73,-564.88,-508.287,-538.2,0,-479.8	1/1:387:0,387,0:0:0:387,0:13618,0:-1220.36,-116.499,0,-1220.36,-116.499,-1220.36	1/1:308:0,308,0:0:0:308,0:10783,0:-964.239,-92.7172,0,-964.239,-92.7172,-964.239	1/2:196:0,94,102:0:0:94,102:3321,3628:-565.242,-295.943,-267.646,-269.652,0,-238.947	1/2:127:0,53,74:0:0:53,74:1848,2656:-365.651,-217.007,-201.052,-148.995,0,-126.719	1/2:302:0,142,160:0:0:142,160:5016,5726:-873.673,-467.2,-424.454,-406.827,0,-358.662	1/1:326:0,324,1:0:0:324,1:11371,36:-1018.71,-97.5337,0,-1015.77,-94.5913,-1015.47	1/2:185:0,96,85:0:0:96,85:3354,3043:-518.9,-248.152,-219.253,-270.742,0,-245.154	1/1:249:0,249,0:0:0:249,0:8680,0:-778.537,-74.9565,0,-778.537,-74.9565,-778.537	1/1:226:0,225,1:0:0:225,1:7932,36:-706.225,-67.7318,0,-703.373,-64.5301,-703.072	1/1:213:0,213,0:0:0:213,0:7488,0:-671.098,-64.1194,0,-671.098,-64.1194,-671.098	1/2:205:0,105,97:0:0:105,97:3678,3479:-582.021,-283.758,-252.15,-298.258,0,-269.058	1/2:225:0,108,117:0:0:108,117:3772,4179:-644.733,-340.704,-308.193,-304.021,0,-268.801	1/2:177:0,85,91:0:0:85,91:3016,3260:-509.439,-266.011,-240.423,-243.571,0,-216.177	1/1:146:0,146,0:0:0:146,0:5131,0:-459.364,-43.9504,0,-459.364,-43.9504,-459.364	1/1:230:0,228,1:0:0:228,1:8040,32:-720.177,-68.6348,0,-717.599,-66.0337,-717.298	1/2:155:0,81,74:0:0:81,74:2872,2656:-448.915,-217.007,-192.623,-232.263,0,-209.987	1/2:155:0,70,85:0:0:70,85:2461,3011:-444.029,-245.629,-224.557,-198.751,0,-173.164	1/2:493:0,219,274:0:0:219,274:7734,9784:-1421.15,-795.312,-729.386,-625.865,0,-543.383	1/2:321:0,162,159:0:0:162,159:5698,5657:-922.747,-461.076,-412.309,-461.713,0,-413.849	1/2:190:0,68,122:0:0:68,122:2384,4351:-548.064,-355.038,-334.568,-193.377,0,-156.651	1/1:128:0,128,0:0:0:128,0:4480,0:-401.618,-38.5318,0,-401.618,-38.5318,-401.618	1/1:141:0,137,4:0:0:137,4:4844,144:-433.599,-41.2411,0,-421.854,-29.476,-420.649	1/1:157:0,157,0:0:0:157,0:5453,0:-488.873,-47.2617,0,-488.873,-47.2617,-488.873	1/2:689:0,357,332:0:0:357,332:12507,11825:-1973.8,-964.101,-856.633,-1010.05,0,-910.113	1/1:565:0,564,0:0:0:564,0:19867,0:-1778.35,-169.781,0,-1778.35,-169.781,-1778.35	1/1:107:0,106,1:0:0:106,1:3765,36:-336.688,-31.9092,0,-333.751,-28.6119,-333.45	1/2:792:0,364,423:0:0:364,423:12809,15082:-2261.34,-1229.43,-1119.85,-1031.93,0,-904.593	1/1:257:0,257,0:0:0:257,0:9053,0:-810.357,-77.3647,0,-810.357,-77.3647,-810.357	1/1:184:0,184,0:0:0:184,0:6471,0:-579.806,-55.3895,0,-579.806,-55.3895,-579.806	1/1:17:0,17,0:0:0:17,0:593,0:-53.5148,-5.11751,0,-53.5148,-5.11751,-53.5148	1/1:34:0,34,0:0:0:34,0:1197,0:-107.675,-10.235,0,-107.675,-10.235,-107.675	1/2:6:0,2,4:0:0:2,4:72,144:-17.9486,-12.1095,-11.5074,-6.1976,0,-4.99348	1/1:13:0,13,0:0:0:13,0:459,0:-41.1644,-3.91339,0,-41.1644,-3.91339,-41.1644	1/1:17:0,17,0:0:0:17,0:598,0:-53.9741,-5.11751,0,-53.9741,-5.11751,-53.9741	1/2:561:0,259,302:0:0:259,302:9130,10737:-1613.14,-874.907,-796.94,-738.229,0,-647.318	1/2:321:0,171,150:0:0:171,150:5973,5346:-918.899,-435.987,-384.511,-483.264,0,-438.109	1/2:213:0,113,100:0:0:113,100:3974,3567:-612.726,-291.13,-257.113,-321.95,0,-291.847	1/2:10:0,3,7:0:0:3,7:101,252:-29.0973,-20.9208,-20.0177,-8.52004,0,-6.41283	1/2:233:0,122,111:0:0:122,111:4290,3965:-670.472,-323.623,-286.898,-347.202,0,-313.788	1/1:138:0,138,0:0:0:138,0:4856,0:-434.529,-41.5421,0,-434.529,-41.5421,-434.529	1/1:343:0,343,0:0:0:343,0:12054,0:-1077.72,-103.253,0,-1077.72,-103.253,-1077.72	1/1:212:0,211,0:0:0:211,0:7446,0:-665.108,-63.5173,0,-665.108,-63.5173,-665.108	1/1:167:0,165,1:0:0:165,1:5812,32:-519.998,-49.67,0,-517.42,-47.11,-517.119	1/1:202:0,202,0:0:0:202,0:7117,0:-638.135,-60.8081,0,-638.135,-60.8081,-638.135	1/1:238:0,234,4:0:0:234,4:8224,135:-735.709,-70.441,0,-724.771,-59.4457,-723.567	1/2:350:0,165,184:0:0:165,184:5740,6576:-998.082,-536.037,-486.367,-462.038,0,-406.649	1/1:272:0,270,1:0:0:270,1:9523,36:-851.494,-81.2781,0,-848.557,-78.2708,-848.256	1/2:337:0,195,141:0:0:195,141:6897,5048:-970.122,-411.643,-352.942,-558.475,0,-516.029	1/2:242:1,125,116:1:23:125,116:4405,4125:-689.457,-334.516,-298.655,-353.595,0,-320.444	1/1:21:0,20,0:0:0:20,0:696,0:-62.4878,-6.0206,0,-62.4878,-6.0206,-62.4878	1/1:290:0,289,1:0:0:289,1:10146,36:-908.302,-86.9977,0,-905.364,-84.0401,-905.063	1/1:87:0,86,0:0:0:86,0:3006,0:-269.629,-25.8886,0,-269.629,-25.8886,-269.629	1/1:30:0,30,0:0:0:30,0:1061,0:-94.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chr01	32870600	.	G	A	27870.9	PASS	AB=0.470052;ABP=31.2334;AC=40;AF=0.215054;AN=186;AO=1715;CIGAR=1X;DP=7350;DPB=7350;DPRA=1.47015;EPP=3727.09;EPPR=12234.9;GTI=2;LEN=1;MEANALT=1.02326;MQM=54.3516;MQMR=59.6096;NS=93;NUMALT=1;ODDS=0.349752;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61469;QR=201357;RO=5633;RPL=0;RPP=3727.09;RPPR=12234.9;RPR=1715;RUN=1;SAF=1715;SAP=3727.09;SAR=0;SRF=5633;SRP=12234.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5584	0/1:96:54,42:54:1936:42:1508:-106.617,0,-145.593	0/0:100:100,0:100:3572:0:0:0,-30.103,-321.652	0/0:224:224,0:224:8018:0:0:0,-67.4307,-721.611	0/1:11:8,3:8:280:3:108:-6.74587,0,-22.228	0/1:17:11,6:11:392:6:216:-14.6232,0,-30.5025	0/1:55:32,23:32:1132:23:813:-56.8785,0,-85.6296	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.855	0/1:38:23,15:23:824:15:540:-36.7574,0,-63.0438	0/0:213:213,0:213:7598:0:0:0,-64.1194,-683.822	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.446	0/0:53:53,0:53:1877:0:0:0,-15.9546,-169.142	0/1:67:29,38:29:1040:38:1360:-101.371,0,-73.7348	0/1:89:42,47:42:1504:47:1692:-125.383,0,-108.858	0/1:46:25,21:25:892:21:752:-53.9308,0,-66.75	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.381	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.596	0/1:73:39,34:39:1400:34:1224:-86.7666,0,-104.271	0/1:27:18,9:18:644:9:324:-21.153,0,-50.1628	0/1:200:144,56:144:5145:56:2012:-120.694,0,-402.961	0/1:128:68,60:68:2436:60:2152:-155.127,0,-180.949	0/1:34:17,17:17:612:17:608:-44.7108,0,-45.1738	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.196	0/0:203:193,10:193:6924:10:356:0,-28.7715,-590.778	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2402	0/1:244:144,100:144:5161:100:3588:-248.418,0,-391.149	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.368	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.296	0/1:166:79,87:79:2836:87:3132:-231.83,0,-205.45	0/0:131:131,0:131:4685:0:0:0,-39.4349,-421.791	0/0:83:83,0:83:2957:0:0:0,-24.9855,-266.253	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82813	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:224:122,102:122:4353:102:3664:-261.464,0,-324.495	0/1:101:57,44:57:2021:44:1576:-110.923,0,-151.587	0/1:56:26,30:26:936:30:1078:-80.0378,0,-67.7018	.:.:.:.:.:.:.:.	0/1:86:41,45:41:1472:45:1620:-119.849,0,-106.843	0/0:30:29,0:29:1021:0:0:0,-8.72987,-91.8106	0/0:56:56,0:56:2001:0:0:0,-16.8577,-180.357	0/0:101:101,0:101:3605:0:0:0,-30.404,-324.619	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.508	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.055	0/0:94:94,0:94:3327:0:0:0,-28.2968,-299.536	0/1:133:66,67:66:2368:67:2366:-172.769,0,-173.332	0/0:128:128,0:128:4561:0:0:0,-38.5318,-410.646	0/1:136:51,85:51:1809:85:3037:-231.887,0,-122.148	0/1:175:92,83:92:3285:83:2980:-214.132,0,-242.918	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8764	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.805	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.485	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1727	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:5,4:5:180:4:144:-10.5992,0,-13.8428	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.994	0/0:119:118,1:118:4240:1:36:0,-32.2269,-378.159	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3112	0/0:209:209,0:209:7440:0:0:0,-62.9153,-669.566	0/1:132:52,80:52:1864:80:2853:-216.974,0,-127.849	0/0:139:139,0:139:4957:0:0:0,-41.8432,-446.267	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.417	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.918	0/1:67:40,27:40:1440:27:972:-66.3262,0,-109.169	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:47:30,17:30:1076:17:612:-41.1257,0,-82.9174	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.425	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:35:24,11:24:841:11:396:-24.1594,0,-65.4181	0/1:104:46,57:46:1648:57:2052:-152.927,0,-117.222	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.689	0/1:139:85,54:85:3044:54:1940:-132.268,0,-232.293	0/1:27:20,7:20:716:7:252:-14.8228,0,-56.6399	0/0:159:158,1:158:5684:1:36:0,-44.2745,-507.026	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:62:30,32:30:1068:32:1152:-84.1025,0,-77.7586	0/1:62:39,23:39:1400:23:828:-55.9865,0,-107.578	0/1:185:83,102:83:2965:102:3617:-269.326,0,-211.37	0/1:103:60,43:60:2160:43:1533:-106.471,0,-163.653	0/1:67:35,32:35:1256:32:1152:-83.4275,0,-93.1735	0/0:91:91,0:91:3268:0:0:0,-27.3937,-293.327	0/1:138:70,68:70:2512:68:2444:-177.145,0,-184.79	0/1:52:27,25:27:964:25:900:-65.158,0,-71.3978	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.151	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.226	0/1:44:21,23:21:752:23:828:-61.1697,0,-54.7563	0/1:68:28,40:28:1000:40:1436:-107.985,0,-69.8407	0/1:80:36,44:36:1288:44:1580:-117.945,0,-92.1318	0/0:87:87,0:87:3094:0:0:0,-26.1896,-278.677	0/0:110:110,0:110:3937:0:0:0,-33.1133,-354.509
chr01	32989025	.	CCA	TCA	112866	PASS	AB=0.462651;ABP=43.2375;AC=149;AF=0.792553;AN=188;AO=5336;CIGAR=1X2M;DP=7152;DPB=7152;DPRA=0;EPP=11590;EPPR=3905.15;GTI=1;LEN=1;MEANALT=1.18085;MQM=59.9016;MQMR=59.9215;NS=94;NUMALT=1;ODDS=0.49237;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191202;QR=62564;RO=1797;RPL=0;RPP=11590;RPPR=3905.15;RPR=5336;RUN=1;SAF=5336;SAP=11590;SAR=0;SRF=1797;SRP=3905.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1860:-167.459,-15.6536,0	0/1:90:57,32:57:1985:32:1148:-76.4784,0,-151.771	1/1:156:1,155:1:36:155:5520:-493.302,-43.3624,0	1/1:183:0,182:0:0:182:6528:-587.197,-54.7875,0	0/1:10:6,4:6:208:4:144:-10.3033,0,-16.0482	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:89:57,32:57:1993:32:1144:-76.4779,0,-152.852	1/1:134:0,133:0:0:133:4776:-429.603,-40.037,0	0/1:86:25,61:25:883:61:2196:-172.017,0,-53.8997	1/1:98:0,98:0:0:98:3512:-316.289,-29.5009,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:116:0,115:0:0:115:4132:-371.703,-34.6185,0	0/1:99:40,58:40:1393:58:2080:-157.446,0,-95.9116	0/1:88:60,27:60:2102:27:972:-61.2677,0,-162.918	1/1:111:0,111:0:0:111:3984:-358.747,-33.4143,0	1/1:85:1,84:1:36:84:3016:-268.058,-21.9893,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:58:0,58:0:0:58:2088:-188.182,-17.4597,0	0/1:38:21,17:21:711:17:596:-42.5281,0,-52.8655	0/1:74:37,36:37:1258:36:1296:-94.6283,0,-91.1998	0/1:94:46,47:46:1615:47:1684:-123.491,0,-117.282	0/1:18:12,6:12:394:6:216:-14.372,0,-30.3563	1/1:57:0,56:0:0:56:2012:-180.993,-16.8577,0	1/1:67:5,62:5:175:62:2220:-183.971,-4.07586,0	1/1:62:1,61:1:28:61:2177:-193.395,-15.8642,0	0/1:208:113,94:113:3941:94:3326:-236.612,0,-292.215	1/1:168:0,168:0:0:168:6032:-542.977,-50.573,0	1/1:33:0,33:0:0:33:1183:-106.778,-9.93399,0	1/1:115:2,113:2:72:113:4033:-356.321,-27.7817,0	1/1:66:3,63:3:99:63:2268:-195.145,-10.6314,0	1/1:81:0,80:0:0:80:2872:-258.357,-24.0824,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:6:3,3:3:106:3:108:-8.26899,0,-8.08292	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:215:113,102:113:3991:102:3647:-263.712,0,-294.662	0/1:89:69,20:69:2375:20:712:-37.3425,0,-187.212	0/1:93:57,36:57:1993:36:1296:-88.9481,0,-151.646	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:98:56,42:56:1967:42:1512:-106.874,0,-147.783	0/1:51:22,29:22:715:29:1044:-78.9223,0,-49.2993	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:76:0,76:0:0:76:2736:-246.479,-22.8783,0	1/1:69:0,69:0:0:69:2464:-222.009,-20.7711,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:60:0,59:0:0:59:2103:-189.195,-17.7608,0	0/1:124:70,54:70:2436:54:1921:-135.835,0,-182.168	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:105:43,62:43:1512:62:2224:-168.686,0,-104.717	0/1:59:43,16:43:1508:16:568:-33.6911,0,-118.251	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:99:0,99:0:0:99:3556:-320.247,-29.802,0	1/1:38:0,35:0:0:35:1252:-112.625,-10.5361,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:115:0,115:0:0:115:4132:-372.054,-34.6185,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:15:0,15:0:0:15:536:-48.5715,-4.51545,0	0/1:23:13,10:13:447:10:356:-25.4576,0,-33.6336	1/1:71:0,71:0:0:71:2544:-229.206,-21.3731,0	1/1:130:2,128:2:72:128:4600:-407.326,-32.2972,0	1/1:13:0,13:0:0:13:458:-41.5382,-3.91339,0	1/1:105:0,104:0:0:104:3700:-332.842,-31.3071,0	0/1:103:49,54:49:1706:54:1936:-143.51,0,-122.816	1/1:61:0,61:0:0:61:2169:-195.2,-18.3628,0	1/1:65:0,65:0:0:65:2321:-209.148,-19.567,0	1/1:82:5,77:5:167:77:2753:-232.648,-9.32598,0	0/1:53:35,18:35:1173:18:644:-42.336,0,-89.9113	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:52:33,18:33:1153:18:644:-42.5784,0,-88.3636	1/1:85:1,84:1:27:84:3016:-268.971,-22.8878,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:105:36,68:36:1255:68:2436:-187.848,0,-81.6048	0/1:79:29,50:29:1010:50:1790:-137.6,0,-67.4279	1/1:84:0,84:0:0:84:3012:-271.266,-25.2865,0	0/1:160:87,73:87:3042:73:2628:-188.584,0,-225.839	0/1:42:10,32:10:324:32:1140:-90.2659,0,-16.8321	1/1:112:0,111:0:0:111:3984:-358.469,-33.4143,0	1/1:16:0,16:0:0:16:576:-52.1668,-4.81648,0	0/1:84:43,41:43:1496:41:1476:-107.85,0,-109.644	0/1:74:43,31:43:1467:31:1116:-78.4617,0,-110.04	0/1:161:101,60:101:3524:60:2152:-145.481,0,-268.908	0/1:83:49,34:49:1714:34:1216:-84.6748,0,-129.557	0/1:103:46,57:46:1628:57:2040:-152.865,0,-115.792	1/1:75:0,75:0:0:75:2667:-240.272,-22.5773,0	0/1:146:68,78:68:2395:78:2786:-207.028,0,-171.857	0/1:29:12,17:12:420:17:608:-46.3189,0,-29.4038	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:84:0,84:0:0:84:3020:-272.022,-25.2865,0	0/1:79:52,27:52:1826:27:964:-63.2955,0,-140.837	0/1:123:73,50:73:2556:50:1792:-124.43,0,-193.265	0/1:77:43,34:43:1486:34:1224:-87.0975,0,-110.844	1/1:31:0,31:0:0:31:1112:-100.305,-9.33193,0	1/1:143:0,143:0:0:143:5140:-462.729,-43.0473,0
chr01	32989083	.	A	G	37592.9	PASS	AB=0.554291;ABP=90.7211;AC=39;AF=0.207447;AN=188;AO=1915;CIGAR=1X;DP=7192;DPB=7192;DPRA=1.33266;EPP=2557.75;EPPR=10666.1;GTI=2;LEN=1;MEANALT=1.02222;MQM=59.9243;MQMR=59.9139;NS=94;NUMALT=1;ODDS=1.18748;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67408;QR=187377;RO=5276;RPL=1708;RPP=2557.75;RPPR=10666.1;RPR=207;RUN=1;SAF=1915;SAP=4161.38;SAR=0;SRF=5276;SRP=11459.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1911:0:0:0,-16.2556,-172.255	0/1:89:32,57:32:1144:57:2001:-153.569,0,-76.4778	0/0:148:148,0:148:5274:0:0:0,-44.5524,-474.778	0/0:175:175,0:175:6175:0:0:0,-52.6802,-555.854	0/1:42:6,36:6:216:36:1288:-103.58,0,-7.14725	0/1:37:9,28:9:320:28:1004:-79.5378,0,-18.0042	0/1:86:32,54:32:1148:54:1894:-144.846,0,-77.7413	0/0:133:133,0:133:4741:0:0:0,-40.037,-426.845	0/1:89:61,28:61:2142:28:996:-63.1632,0,-166.256	0/0:95:95,0:95:3375:0:0:0,-28.5978,-303.966	0/0:70:70,0:70:2487:0:0:0,-21.0721,-224.083	0/0:112:112,0:112:3980:0:0:0,-33.7154,-358.383	0/1:98:58,40:58:2071:40:1415:-98.1456,0,-156.382	0/1:82:26,56:26:932:56:1980:-153.79,0,-59.5144	0/0:108:108,0:108:3850:0:0:0,-32.5112,-346.695	0/0:82:81,1:81:2884:1:36:0,-21.0862,-256.186	0/0:33:33,0:33:1170:0:0:0,-9.93399,-105.606	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.501	0/1:32:14,18:14:496:18:627:-47.1214,0,-35.3413	0/1:77:38,39:38:1343:39:1404:-103.48,0,-97.99	0/1:94:45,48:45:1599:48:1711:-125.918,0,-115.844	0/1:35:7,28:7:248:28:1000:-79.776,0,-12.1281	0/0:56:56,0:56:1990:0:0:0,-16.8577,-179.373	0/0:64:59,5:59:2096:5:171:0,-3.54047,-173.185	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.773	0/1:206:88,118:88:3097:118:4164:-312.923,0,-215.843	0/0:165:165,0:165:5890:0:0:0,-49.6699,-530.206	0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.926	0/0:112:110,2:110:3895:2:72:0,-26.8786,-343.911	0/0:66:64,2:64:2280:2:72:0,-13.0313,-198.626	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.346	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/1:7:4,3:4:140:3:104:-7.5956,0,-10.8374	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:13:13,0:13:452:0:0:0,-3.91339,-41.0111	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:211:102,109:102:3623:109:3813:-279.855,0,-262.76	0/1:97:20,77:20:712:77:2708:-214.753,0,-35.2067	0/1:90:36,54:36:1270:54:1871:-141.574,0,-87.5086	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:94:40,54:40:1432:54:1892:-142.254,0,-100.881	0/1:51:29,22:29:1024:22:780:-55.1705,0,-77.1201	0/0:83:83,0:83:2933:0:0:0,-24.9855,-264.205	0/0:76:76,0:76:2674:0:0:0,-22.8783,-240.904	0/0:67:67,0:67:2367:0:0:0,-20.169,-213.286	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.607	0/1:129:55,74:55:1960:74:2598:-195.234,0,-137.838	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:102:60,42:60:2148:42:1472:-102.052,0,-162.753	0/1:59:15,44:15:532:44:1576:-124.371,0,-30.4523	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:102:102,0:102:3594:0:0:0,-30.7051,-323.668	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:17:17,0:17:596:0:0:0,-5.11751,-53.9678	0/0:113:113,0:113:4028:0:0:0,-34.0164,-362.707	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1716	0/1:22:10,12:10:356:12:432:-32.5985,0,-25.7586	0/0:72:72,0:72:2559:0:0:0,-21.6742,-230.556	0/0:128:126,2:126:4488:2:72:0,-31.6951,-397.064	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.3291	0/0:103:103,0:103:3667:0:0:0,-31.0061,-330.234	0/1:112:56,56:56:2000:56:1980:-144.746,0,-146.558	0/0:58:58,0:58:2056:0:0:0,-17.4597,-184.814	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:80:76,4:76:2653:4:144:0,-10.7735,-225.706	0/1:57:18,39:18:635:39:1384:-107.695,0,-40.3183	0/0:49:49,0:49:1739:0:0:0,-14.7505,-156.786	0/1:54:19,35:19:684:35:1239:-95.558,0,-45.6347	0/0:79:79,0:79:2780:0:0:0,-23.7814,-250.441	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/1:106:69,37:69:2448:37:1295:-84.9392,0,-188.667	0/1:74:48,26:48:1693:26:910:-59.9378,0,-130.378	0/0:82:82,0:82:2919:0:0:0,-24.6845,-262.771	0/1:152:68,84:68:2423:84:2971:-221.854,0,-172.569	0/1:100:40,60:40:1416:60:2138:-162.583,0,-97.6343	0/0:108:108,0:108:3855:0:0:0,-32.5112,-347.138	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5201	0/1:84:42,42:42:1504:42:1465:-106.856,0,-110.368	0/1:81:33,48:33:1184:48:1682:-127.28,0,-82.4711	0/1:163:60,103:60:2130:103:3628:-277.657,0,-142.899	0/1:80:35,45:35:1252:45:1570:-117.507,0,-88.8164	0/1:102:56,46:56:1987:46:1605:-114.022,0,-148.399	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.521	0/1:137:75,62:75:2653:62:2113:-149.191,0,-197.775	0/1:28:16,12:16:567:12:421:-29.7946,0,-42.9319	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:81:81,0:81:2862:0:0:0,-24.3834,-257.81	0/1:78:27,51:27:959:51:1790:-137.272,0,-63.1451	0/1:117:47,70:47:1657:70:2450:-185.533,0,-114.195	0/1:72:30,42:30:1046:42:1470:-110.905,0,-72.5839	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.61	0/0:138:138,0:138:4906:0:0:0,-41.5421,-441.688
chr01	32989155	.	G	A	170673	PASS	AB=0.490702;ABP=6.44257;AC=147;AF=0.781915;AN=188;AO=7988;CIGAR=1X;DP=10347;DPB=10347;DPRA=37.0753;EPP=17348.7;EPPR=5073.4;GTI=1;LEN=1;MEANALT=1.21505;MQM=59.9333;MQMR=59.7803;NS=94;NUMALT=1;ODDS=3.55425;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=285964;QR=83108;RO=2335;RPL=7988;RPP=17348.7;RPPR=5073.4;RPR=0;RUN=1;SAF=0;SAP=17348.7;SAR=7988;SRF=0;SRP=5073.4;SRR=2335;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:204:107,96:107:3819:96:3439:-248.253,0,-282.246	1/1:129:0,129:0:0:129:4640:-417.631,-38.8329,0	1/1:289:1,287:1:27:287:10244:-919.103,-84.3118,0	0/1:53:29,24:29:1044:24:860:-61.758,0,-78.3202	0/1:22:18,4:18:640:4:144:-6.69096,0,-51.2181	0/1:105:71,34:71:2498:34:1224:-78.8589,0,-193.432	1/1:163:0,163:0:0:163:5860:-527.508,-49.0679,0	0/1:90:21,69:21:744:69:2480:-196.36,0,-40.1916	1/1:144:0,144:0:0:144:5148:-462.835,-43.3483,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	0/1:92:46,45:46:1652:45:1612:-117.617,0,-121.215	0/1:92:54,37:54:1928:37:1328:-92.137,0,-146.112	1/1:112:0,111:0:0:111:3976:-357.65,-33.4143,0	1/1:83:0,83:0:0:83:2968:-267.335,-24.9855,0	1/1:69:0,69:0:0:69:2484:-223.813,-20.7711,0	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	0/1:34:19,15:19:680:15:536:-38.3398,0,-51.2941	0/1:228:134,94:134:4778:94:3368:-234.701,0,-361.528	0/1:174:84,90:84:2986:90:3220:-237.643,0,-216.593	0/1:83:56,27:56:1999:27:968:-62.4519,0,-155.198	1/1:117:0,117:0:0:117:4204:-378.539,-35.2205,0	1/1:145:5,140:5:180:140:5008:-434.303,-27.1036,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	0/1:363:153,210:153:5460:210:7492:-565.051,0,-382.124	1/1:250:0,249:0:0:249:8924:-801.42,-74.9565,0	1/1:64:0,64:0:0:64:2294:-206.721,-19.2659,0	1/1:257:0,257:0:0:257:9221:-829.854,-77.3647,0	1/1:182:0,182:0:0:182:6505:-585.095,-54.7875,0	1/1:177:0,176:0:0:176:6268:-563.859,-52.9813,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:179:82,97:82:2914:97:3472:-258.807,0,-208.603	0/1:200:103,97:103:3696:97:3449:-250.398,0,-272.564	0/1:74:31,43:31:1116:43:1544:-116.977,0,-77.1963	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:163:96,67:96:3418:67:2396:-166.825,0,-258.752	0/1:37:13,24:13:464:24:860:-66.5837,0,-30.9594	1/1:125:0,123:0:0:123:4404:-396.173,-37.0267,0	1/1:104:0,103:0:0:103:3684:-331.403,-31.0061,0	1/1:91:0,91:0:0:91:3268:-294.34,-27.3937,0	1/1:79:0,79:0:0:79:2836:-255.42,-23.7814,0	1/1:159:0,159:0:0:159:5692:-512.34,-47.8638,0	0/1:146:81,64:81:2891:64:2296:-162.98,0,-216.496	1/1:131:0,131:0:0:131:4680:-421.356,-39.4349,0	0/1:212:95,116:95:3380:116:4145:-309.355,0,-240.485	0/1:135:72,62:72:2567:62:2216:-159.007,0,-190.582	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:136:0,136:0:0:136:4856:-437.194,-40.9401,0	1/1:32:0,32:0:0:32:1133:-102.006,-9.63296,0	1/1:44:0,44:0:0:44:1578:-142.311,-13.2453,0	1/1:140:0,140:0:0:140:5020:-451.941,-42.1442,0	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	1/1:19:0,19:0:0:19:684:-61.8894,-5.71957,0	0/1:25:5,20:5:180:20:701:-55.886,0,-9.02631	1/1:102:0,101:0:0:101:3620:-325.637,-30.404,0	1/1:115:2,112:2:72:112:4012:-354.432,-27.8405,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:322:0,320:0:0:320:11425:-1027.44,-96.3296,0	0/1:214:95,119:95:3399:119:4243:-317.58,0,-241.693	1/1:85:0,85:0:0:85:3029:-272.839,-25.5876,0	1/1:92:0,92:0:0:92:3272:-294.701,-27.6948,0	1/1:277:1,276:1:36:276:9892:-886.616,-79.787,0	0/1:151:114,37:114:4056:37:1332:-74.7269,0,-319.611	1/1:31:1,30:1:36:30:1064:-92.4734,-5.73366,0	0/1:70:32,38:32:1136:38:1368:-102.349,0,-81.4755	1/1:121:0,121:0:0:121:4321:-389.065,-36.4246,0	1/1:33:0,33:0:0:33:1168:-105.427,-9.93399,0	0/1:67:42,25:42:1504:25:892:-60.4307,0,-115.486	0/1:100:53,47:53:1900:47:1692:-122.461,0,-141.069	1/1:158:0,158:0:0:158:5640:-507.715,-47.5627,0	0/1:177:58,119:58:2055:119:4268:-330.97,0,-131.91	0/1:44:28,16:28:979:16:576:-38.9297,0,-75.0671	1/1:142:1,141:1:36:141:5068:-452.664,-39.148,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:110:50,60:50:1776:60:2156:-161.194,0,-127.01	0/1:122:56,66:56:1986:66:2368:-176.616,0,-142.286	0/1:200:113,87:113:4014:87:3120:-220.82,0,-300.699	0/1:115:57,57:57:2023:57:2044:-149.555,0,-147.664	0/1:78:42,36:42:1488:36:1288:-92.7432,0,-110.734	1/1:149:0,147:0:0:147:5264:-473.524,-44.2514,0	0/1:124:56,68:56:2012:68:2444:-182.882,0,-144.022	0/1:40:20,20:20:703:20:720:-53.0876,0,-51.5523	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	1/1:92:0,90:0:0:90:3215:-289.209,-27.0927,0	0/1:49:21,28:21:748:28:1008:-76.2813,0,-52.4029	0/1:105:60,45:60:2119:45:1616:-114.122,0,-159.359	0/1:84:52,32:52:1789:32:1152:-78.7036,0,-136.004	1/1:140:0,139:0:0:139:4976:-447.623,-41.8432,0	1/1:113:0,112:0:0:112:3998:-359.649,-33.7154,0
chr01	33021233	.	T	G	178790	PASS	AB=0.492733;ABP=5.25112;AC=148;AF=0.787234;AN=188;AO=8510;CIGAR=1X;DP=11025;DPB=11025;DPRA=0;EPP=18482.2;EPPR=5431.69;GTI=0;LEN=1;MEANALT=1.08511;MQM=58.2907;MQMR=59.8383;NS=94;NUMALT=1;ODDS=2.58201;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302198;QR=89387;RO=2504;RPL=0;RPP=18482.2;RPPR=5431.69;RPR=8510;RUN=1;SAF=0;SAP=18482.2;SAR=8510;SRF=0;SRP=5440.38;SRR=2504;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:97:0,97:0:0:97:3416:-307.163,-29.1999,0	0/1:111:65,46:65:2302:46:1652:-115.554,0,-173.578	1/1:224:0,222:0:0:222:7876:-707.563,-66.8287,0	1/1:265:0,265:0:0:265:9415:-846.226,-79.773,0	0/1:91:59,32:59:2112:32:1144:-75.2499,0,-162.955	0/1:52:32,20:32:1139:20:689:-46.659,0,-87.1648	0/1:70:32,38:32:1114:38:1360:-101.615,0,-79.4899	1/1:162:2,160:2:72:160:5688:-503.88,-41.9301,0	0/1:141:65,76:65:2328:76:2693:-199.593,0,-167.334	1/1:101:0,101:0:0:101:3589:-322.879,-30.404,0	1/1:67:0,67:0:0:67:2323:-209.087,-20.169,0	1/1:141:0,141:0:0:141:4964:-446.545,-42.4452,0	1/1:98:0,98:0:0:98:3500:-314.926,-29.5009,0	0/1:61:25,36:25:900:36:1275:-96.1384,0,-62.9582	1/1:104:0,104:0:0:104:3701:-332.962,-31.3071,0	1/1:65:0,65:0:0:65:2301:-206.059,-19.567,0	1/1:51:0,51:0:0:51:1803:-162.385,-15.3525,0	1/1:45:0,45:0:0:45:1600:-143.826,-13.5464,0	0/1:16:7,8:7:252:8:279:-20.5731,0,-18.1537	0/1:276:120,156:120:4263:156:5576:-418.438,0,-300.716	0/1:188:89,99:89:3196:99:3499:-258.432,0,-231.268	0/1:282:194,88:194:6887:88:3124:-196.193,0,-534.352	1/1:188:2,185:2:72:185:6572:-584.193,-49.8157,0	1/1:141:9,132:9:324:132:4696:-392.797,-12.9394,0	1/1:153:0,153:0:0:153:5465:-491.055,-46.0576,0	0/1:319:160,159:160:5682:159:5641:-411.263,0,-415.333	1/1:310:2,308:2:72:308:10954:-977.461,-86.4826,0	1/1:39:0,39:0:0:39:1370:-123.552,-11.7402,0	1/1:448:0,445:0:0:445:15865:-1425.87,-133.958,0	1/1:169:2,167:2:72:167:5890:-522.91,-44.0373,0	1/1:126:0,126:0:0:126:4489:-402.707,-37.9298,0	1/1:5:0,5:0:0:5:171:-15.7245,-1.50515,0	0/1:11:3,8:3:108:8:268:-21.0767,0,-6.76384	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:7:0,7:0:0:7:237:-21.0582,-2.10721,0	1/1:24:0,24:0:0:24:847:-76.5129,-7.22472,0	0/1:228:112,116:112:4024:116:4135:-302.851,0,-293.709	0/1:146:54,92:54:1936:92:3291:-252.394,0,-130.51	0/1:47:27,20:27:968:20:699:-49.084,0,-73.289	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:122:57,64:57:2044:64:2273:-167.863,0,-147.452	0/1:17:10,6:10:356:6:201:-13.1988,0,-27.2053	1/1:265:0,265:0:0:265:9430:-845.661,-79.773,0	1/1:79:0,79:0:0:79:2804:-252.275,-23.7814,0	1/1:54:0,54:0:0:54:1898:-170.527,-16.2556,0	1/1:155:0,155:0:0:155:5531:-497.405,-46.6597,0	1/1:167:0,167:0:0:167:5926:-532.433,-50.272,0	0/1:201:102,99:102:3664:99:3506:-254.244,0,-269.182	1/1:137:0,137:0:0:137:4840:-434.564,-41.2411,0	0/1:100:55,45:55:1965:45:1616:-115.606,0,-146.975	0/1:146:66,80:66:2372:80:2839:-210.43,0,-169.785	1/1:18:0,18:0:0:18:644:-58.1548,-5.41854,0	1/1:102:0,102:0:0:102:3634:-327.122,-30.7051,0	1/1:65:0,64:0:0:64:2287:-205.45,-19.2659,0	1/1:17:0,17:0:0:17:608:-54.0263,-5.11751,0	1/1:166:1,165:1:36:165:5868:-522.47,-46.4225,0	1/1:57:0,57:0:0:57:2008:-180.942,-17.1587,0	1/1:6:0,6:0:0:6:216:-19.785,-1.80618,0	0/1:22:11,11:11:388:11:396:-29.35,0,-28.6347	1/1:92:0,92:0:0:92:3259:-293.109,-27.6948,0	1/1:102:1,101:1:36:101:3596:-319.668,-27.1068,0	1/1:15:0,15:0:0:15:540:-48.9247,-4.51545,0	1/1:268:0,268:0:0:268:9563:-859.873,-80.676,0	0/1:192:105,87:105:3764:87:3076:-219.13,0,-281.16	1/1:113:2,111:2:72:111:3943:-347.94,-27.1797,0	1/1:108:0,108:0:0:108:3805:-342.454,-32.5112,0	1/1:199:2,197:2:72:197:6963:-619.278,-53.0682,0	0/1:161:99,62:99:3540:62:2219:-151.431,0,-270.342	1/1:36:3,33:3:108:33:1165:-95.0611,-0.76191,0	0/1:67:40,27:40:1440:27:964:-66.872,0,-109.727	1/1:58:0,58:0:0:58:2043:-183.98,-17.4597,0	1/1:19:0,19:0:0:19:667:-60.3294,-5.71957,0	0/1:138:67,71:67:2381:71:2520:-183.973,0,-172.965	0/1:111:43,68:43:1539:68:2410:-183.63,0,-105.388	1/1:189:1,188:1:36:188:6691:-598.045,-53.2964,0	0/1:230:110,120:110:3921:120:4276:-315.511,0,-283.824	0/1:199:97,102:97:3476:102:3628:-266.388,0,-253.077	1/1:94:3,91:3:104:91:3216:-279.819,-18.594,0	1/1:20:0,20:0:0:20:716:-64.6959,-6.0206,0	0/1:127:53,74:53:1908:74:2612:-196.992,0,-133.767	0/1:184:108,76:108:3857:76:2720:-189.202,0,-291.934	0/1:252:120,132:120:4281:132:4720:-348.595,0,-309.579	0/1:58:28,30:28:1000:30:1052:-77.5162,0,-72.849	0/1:91:37,54:37:1328:54:1931:-146.557,0,-92.3584	1/1:59:0,59:0:0:59:2090:-188.207,-17.7608,0	0/1:133:61,72:61:2180:72:2541:-188.636,0,-156.425	0/1:34:23,11:23:816:11:396:-25.3162,0,-63.5267	1/1:63:0,63:0:0:63:2195:-196.411,-18.9649,0	1/1:92:0,92:0:0:92:3261:-293.515,-27.6948,0	0/1:64:31,33:31:1108:33:1180:-87.2421,0,-80.7651	0/1:85:41,44:41:1464:44:1551:-114.261,0,-106.468	0/1:101:64,36:64:2236:36:1296:-86.4226,0,-171.03	1/1:163:0,163:0:0:163:5813:-522.374,-49.0679,0	1/1:132:0,132:0:0:132:4674:-420.418,-39.736,0
chr01	33059716	.	GTT	CTC,CTT	377601	PASS	AB=0.417675,0.579062;ABP=435.982,402.339;AC=148,40;AF=0.787234,0.212766;AN=188;AO=10382,4289;CIGAR=1X1M1X,1X2M;DP=14719;DPB=14721.3;DPRA=0,1.50771;EPP=22503.8,9299.09;EPPR=0;GTI=7;LEN=3,1;MEANALT=2,2.45098;MQM=59.2371,59.8676;MQMR=0;NS=94;NUMALT=2;ODDS=2.3329;PAIRED=0,0;PAIREDR=0;PAO=4,3;PQA=144,108;PQR=0;PRO=0;QA=359075,151727;QR=0;RO=0;RPL=7896,2624;RPP=6124.65,468.634;RPPR=0;RPR=2486,1665;RUN=1,1;SAF=7891,2622;SAP=6102.04,464.758;SAR=2491,1667;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,28,0:0:0:28,0:952,0:-85.7117,-8.42884,0,-85.7117,-8.42884,-85.7117	1/2:226:0,95,131:0:0:95,131:3280,4610:-641.993,-375.631,-347.033,-266.709,0,-227.274	1/1:178:0,176,1:0:0:176,1:6121,36:-550.517,-52.9813,0,-547.58,-50,-547.279	1/1:500:0,499,0:0:0:499,0:17265,0:-1553.11,-150.214,0,-1553.11,-150.214,-1553.11	1/2:87:0,36,51:0:0:36,51:1288,1814:-253.203,-148.187,-137.35,-105.373,0,-90.0201	1/2:71:0,25,45:0:0:25,45:842,1604:-198.344,-130.56,-123.035,-67.8623,0,-54.3159	1/2:166:0,82,84:0:0:82,84:2836,2951:-470.884,-240.538,-215.853,-230.694,0,-205.408	1/1:294:0,292,2:0:0:292,2:10152,72:-912.208,-87.9008,0,-906.333,-81.6661,-905.731	1/2:156:0,47,109:0:0:47,109:1653,3844:-447.447,-312.964,-298.816,-134.834,0,-102.022	1/1:167:0,167,0:0:0:167,0:5727,0:-515.422,-50.272,0,-515.422,-50.272,-515.422	1/1:103:0,103,0:0:0:103,0:3497,0:-314.865,-31.0061,0,-314.865,-31.0061,-314.865	1/1:58:0,58,0:0:0:58,0:2010,0:-180.97,-17.4597,0,-180.97,-17.4597,-180.97	1/1:65:0,65,0:0:0:65,0:2260,0:-203.525,-19.567,0,-203.525,-19.567,-203.525	1/2:89:0,22,67:0:0:22,67:753,2391:-256.361,-195.249,-188.627,-61.4571,0,-41.2881	1/1:171:0,171,0:0:0:171,0:5855,0:-526.809,-51.4761,0,-526.809,-51.4761,-526.809	1/1:44:0,44,0:0:0:44,0:1549,0:-139.655,-13.2453,0,-139.655,-13.2453,-139.655	1/1:83:0,83,0:0:0:83,0:2860,0:-257.56,-24.9855,0,-257.56,-24.9855,-257.56	1/1:59:0,58,0:0:0:58,0:2018,0:-181.589,-17.4597,0,-181.589,-17.4597,-181.589	1/2:41:0,8,33:0:0:8,33:286,1176:-119.525,-96.2138,-93.8055,-23.6684,0,-13.7344	1/2:376:0,191,185:0:0:191,185:6670,6495:-1071.16,-528.949,-471.452,-542.566,0,-486.875	1/2:205:0,61,143:0:0:61,143:2148,5046:-585.6,-410.97,-392.607,-174.711,0,-131.664	1/2:219:0,77,142:0:0:77,142:2652,5050:-627.266,-411.896,-388.717,-215.718,0,-172.972	1/1:160:0,159,1:0:0:159,1:5507,36:-495.207,-47.8638,0,-492.27,-44.5665,-491.969	1/1:115:0,104,10:0:0:104,10:3611,360:-324.605,-31.3071,0,-295.23,-1.93069,-292.219	1/1:71:0,71,0:0:0:71,0:2438,0:-219.282,-21.3731,0,-219.282,-21.3731,-219.282	1/2:547:0,272,273:0:0:272,273:9291,9602:-1535.59,-781.72,-699.84,-753.973,0,-671.792	1/1:216:0,212,3:0:0:212,3:7370,108:-662.623,-63.8184,0,-653.811,-54.8862,-652.908	1/1:30:0,30,0:0:0:30,0:1059,0:-95.6103,-9.0309,0,-95.6103,-9.0309,-95.6103	1/1:563:0,559,0:0:0:559,0:19247,0:-1731.28,-168.276,0,-1731.28,-168.276,-1731.28	1/1:173:0,170,0:0:0:170,0:5890,0:-529.772,-51.1751,0,-529.772,-51.1751,-529.772	1/1:160:0,159,0:0:0:159,0:5544,0:-498.616,-47.8638,0,-498.616,-47.8638,-498.616	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:13:0,5,8:0:0:5,8:175,284:-37.7293,-23.4951,-21.99,-14.5859,0,-12.1777	1/2:15:0,5,10:0:0:5,10:170,360:-43.5165,-29.734,-28.2289,-14.1291,0,-11.1188	1/1:2:0,2,0:0:0:2,0:72,0:-6.83188,-0.60206,0,-6.83188,-0.60206,-6.83188	1/1:10:0,10,0:0:0:10,0:334,0:-30.3823,-3.0103,0,-30.3823,-3.0103,-30.3823	1/2:359:0,172,186:0:0:172,186:5923,6624:-1020.78,-539.771,-487.994,-480.994,0,-425.003	1/2:271:0,125,144:0:0:125,144:4297,5104:-764.72,-415.91,-378.281,-348.917,0,-305.568	1/2:69:0,24,45:0:0:24,45:843,1555:-194.908,-126.632,-119.407,-68.5674,0,-55.0211	1/2:4:0,2,2:0:0:2,2:72,68:-11.7405,-5.85565,-5.25359,-6.23466,0,-5.6326	1/2:315:0,139,175:0:0:139,175:4879,6219:-903.707,-506.727,-464.883,-396.976,0,-344.295	1/2:39:0,9,30:0:0:9,30:310,1059:-111.767,-86.5895,-83.8803,-25.5236,0,-16.4927	1/1:142:0,141,0:0:0:141,0:4902,0:-440.959,-42.4452,0,-440.959,-42.4452,-440.959	1/1:130:0,128,0:0:0:128,0:4446,0:-399.988,-38.5318,0,-399.988,-38.5318,-399.988	1/1:106:0,106,0:0:0:106,0:3659,0:-329.504,-31.9092,0,-329.504,-31.9092,-329.504	1/1:252:0,252,0:0:0:252,0:8565,0:-770.816,-75.8596,0,-770.816,-75.8596,-770.816	1/1:224:0,222,2:0:0:222,2:7735,72:-695.395,-66.8287,0,-689.52,-60.594,-688.918	1/2:302:0,131,171:0:0:131,171:4513,6087:-862.872,-496.444,-457.009,-366.777,0,-315.301	1/1:151:0,150,1:0:0:150,1:5165,36:-464.44,-45.1545,0,-461.503,-41.8573,-461.202	1/2:322:0,158,161:0:0:158,161:5519,5693:-912.441,-463.628,-416.066,-448.811,0,-400.345	1/2:244:0,111,132:0:0:111,132:3845,4666:-692.534,-380.077,-346.662,-312.525,0,-272.79	1/1:25:0,24,0:0:0:24,0:810,0:-72.8502,-7.22472,0,-72.8502,-7.22472,-72.8502	1/1:175:0,174,1:0:0:174,1:6139,36:-551.928,-52.3792,0,-548.99,-49.082,-548.689	1/1:95:0,94,0:0:0:94,0:3264,0:-293.638,-28.2968,0,-293.638,-28.2968,-293.638	1/1:25:0,25,0:0:0:25,0:865,0:-78.1223,-7.52575,0,-78.1223,-7.52575,-78.1223	1/1:177:0,177,0:0:0:177,0:6079,0:-546.843,-53.2823,0,-546.843,-53.2823,-546.84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chr01	33184096	.	G	T	13143.5	PASS	AB=0.407004;ABP=161.733;AC=37;AF=0.198925;AN=186;AO=866;CIGAR=1X;DP=5021;DPB=5021;DPRA=1.17981;EPP=1883.51;EPPR=9018.96;GTI=1;LEN=1;MEANALT=1.02564;MQM=59.9654;MQMR=59.9834;NS=93;NUMALT=1;ODDS=0.319829;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31090;QR=148539;RO=4152;RPL=0;RPP=1883.51;RPPR=9018.96;RPR=866;RUN=1;SAF=866;SAP=1883.51;SAR=0;SRF=4152;SRP=9018.96;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:35:18,17:18:648:17:604:-44.1546,0,-48.1158	0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.747	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.8	0/1:32:21,11:21:756:11:392:-25.9871,0,-58.7343	0/1:32:20,12:20:716:12:428:-29.2258,0,-55.1348	0/1:71:49,22:49:1764:22:792:-50.2325,0,-137.671	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:39:23,16:23:824:16:572:-40.0733,0,-62.7431	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/1:62:29,33:29:1040:33:1179:-87.7534,0,-75.2505	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	0/1:88:51,37:51:1828:37:1332:-93.6917,0,-138.31	0/1:34:29,5:29:1036:5:180:-6.31705,0,-83.3189	0/1:62:26,36:26:932:36:1296:-98.2801,0,-65.5116	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/0:99:94,5:94:3376:5:180:0,-13.2499,-287.503	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:141:76,65:76:2701:65:2319:-166.525,0,-200.888	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.432	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:148:148,0:148:5289:0:0:0,-44.5524,-476.145	0/0:81:80,0:80:2872:0:0:0,-24.0824,-258.357	0/0:115:115,0:115:4112:0:0:0,-34.6184,-370.265	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:147:75,72:75:2684:72:2588:-188.917,0,-197.554	0/1:89:61,28:61:2157:28:1004:-63.8842,0,-167.604	0/1:41:28,13:28:1004:13:468:-30.1174,0,-78.3336	.:.:.:.:.:.:.:.	0/1:72:41,31:41:1472:31:1112:-78.7172,0,-111.102	0/1:26:19,7:19:676:7:252:-15.2022,0,-53.3412	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:133:132,0:132:4707:0:0:0,-39.736,-423.431	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:118:84,34:84:3000:34:1224:-74.9455,0,-234.711	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/1:63:41,22:41:1472:22:792:-52.6408,0,-113.811	0/1:96:62,34:62:2220:34:1212:-80.4874,0,-171.166	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.252	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:95:95,0:95:3388:0:0:0,-28.5978,-305.136	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:12:2,10:2:68:10:360:-29.1319,0,-2.84535	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.401	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:130:130,0:130:4636:0:0:0,-39.1339,-417.405	0/1:67:53,14:53:1900:14:504:-25.5291,0,-151.109	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.596	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:52:30,22:30:1076:22:792:-55.7615,0,-81.4993	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:98:97,1:97:3460:1:36:0,-25.9027,-308.015	0/1:96:54,42:54:1932:42:1512:-107.476,0,-145.258	0/1:74:47,27:47:1673:27:960:-64.4401,0,-128.579	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.446	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:51:36,15:36:1273:15:540:-33.584,0,-99.5184	0/1:81:46,35:46:1648:35:1260:-89.3139,0,-124.225	0/1:49:31,18:31:1087:18:648:-43.9014,0,-83.3875	0/1:97:50,47:50:1787:47:1692:-123.367,0,-131.912	0/1:19:8,11:8:284:11:396:-30.2632,0,-20.1838	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:100:53,47:53:1900:47:1692:-122.464,0,-141.175	0/1:22:9,13:9:320:13:468:-35.837,0,-22.5197	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	0/1:41:21,19:21:748:19:684:-49.4893,0,-55.2444	0/1:34:11,23:11:396:23:828:-64.6091,0,-25.7477	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.817
chr01	33184239	.	G	A	60504.2	PASS	AB=0.488271;ABP=5.20073;AC=147;AF=0.781915;AN=188;AO=2896;CIGAR=1X;DP=3842;DPB=3842;DPRA=41.3011;EPP=6265.56;EPPR=2018.28;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.7162;MQMR=59.9502;NS=94;NUMALT=1;ODDS=0.209688;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102831;QR=33480;RO=944;RPL=3;RPP=6265.56;RPPR=2018.28;RPR=2893;RUN=1;SAF=0;SAP=6291.59;SAR=2896;SRF=0;SRP=2052.88;SRR=944;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1252:-112.982,-10.5361,0	0/1:72:21,51:21:729:51:1823:-142.673,0,-44.2545	1/1:62:0,62:0:0:62:2206:-198.802,-18.6639,0	1/1:100:0,100:0:0:100:3550:-319.376,-30.103,0	0/1:15:10,5:10:356:5:176:-11.6696,0,-27.8658	0/1:20:11,9:11:392:9:315:-22.6666,0,-29.5995	0/1:34:24,10:24:860:10:337:-20.4173,0,-67.4868	1/1:52:0,52:0:0:52:1856:-167.318,-15.6536,0	0/1:36:23,13:23:820:13:464:-31.2586,0,-63.2854	1/1:41:0,41:0:0:41:1451:-130.875,-12.3422,0	1/1:29:0,29:0:0:29:1040:-93.9064,-8.72987,0	1/1:36:0,36:0:0:36:1279:-115.401,-10.8371,0	1/1:75:0,75:0:0:75:2696:-242.88,-22.5773,0	0/1:28:17,11:17:591:11:396:-27.5539,0,-45.0864	1/1:26:0,26:0:0:26:932:-84.1933,-7.82678,0	1/1:41:0,41:0:0:41:1476:-133.135,-12.3422,0	1/1:14:0,14:0:0:14:500:-45.3353,-4.21442,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:13:8,5:8:288:5:171:-11.8121,0,-22.354	0/1:66:29,37:29:1044:37:1299:-97.3347,0,-74.4068	0/1:40:17,23:17:603:23:809:-61.0571,0,-42.5583	0/1:24:17,7:17:604:7:252:-15.8042,0,-47.4659	1/1:37:1,36:1:36:36:1261:-110.187,-7.53984,0	1/1:41:2,39:2:68:39:1362:-116.414,-5.88452,0	1/1:49:0,49:0:0:49:1735:-156.428,-14.7505,0	0/1:82:36,46:36:1268:46:1643:-123.473,0,-89.7355	1/1:103:0,103:0:0:103:3642:-327.98,-31.0061,0	1/1:14:0,14:0:0:14:491:-44.451,-4.21442,0	1/1:85:0,85:0:0:85:3007:-270.857,-25.5876,0	1/1:75:0,75:0:0:75:2634:-237.301,-22.5773,0	1/1:26:0,26:0:0:26:919:-83.0238,-7.82678,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:13:8,5:8:288:5:172:-11.9046,0,-22.354	0/1:4:2,1:2:72:1:36:-2.33536,0,-5.5738	1/1:6:0,6:0:0:6:216:-19.7896,-1.80618,0	1/1:22:0,22:0:0:22:792:-71.6048,-6.62266,0	0/1:81:36,45:36:1283:45:1618:-121.522,0,-91.3892	0/1:35:19,16:19:661:16:561:-40.2811,0,-49.2756	0/1:29:12,17:12:424:17:612:-46.6827,0,-29.7665	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:64:40,24:40:1436:24:856:-58.0927,0,-110.272	0/1:22:11,11:11:396:11:392:-28.9958,0,-29.3601	1/1:62:0,62:0:0:62:2191:-197.447,-18.6639,0	1/1:12:0,12:0:0:12:424:-38.4941,-3.61236,0	1/1:20:0,20:0:0:20:712:-64.4065,-6.0206,0	1/1:56:0,56:0:0:56:1985:-178.887,-16.8577,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:99:45,54:45:1581:54:1908:-142.181,0,-112.776	1/1:70:1,69:1:36:69:2469:-218.861,-17.4738,0	0/1:49:24,25:24:846:25:900:-66.5705,0,-61.7073	0/1:75:31,44:31:1108:44:1560:-118.112,0,-77.4537	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:59:0,59:0:0:59:2107:-189.895,-17.7608,0	1/1:50:0,50:0:0:50:1778:-160.245,-15.0515,0	1/1:15:0,15:0:0:15:540:-48.9347,-4.51545,0	1/1:38:0,38:0:0:38:1351:-121.882,-11.4391,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:14:8,6:8:284:6:212:-15.1986,0,-21.6889	1/1:52:0,52:0:0:52:1825:-164.454,-15.6536,0	1/1:48:0,48:0:0:48:1715:-154.631,-14.4494,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:52:0,52:0:0:52:1841:-165.965,-15.6536,0	0/1:69:29,40:29:1028:40:1399:-105.431,0,-72.062	1/1:33:0,33:0:0:33:1180:-106.505,-9.93399,0	1/1:43:1,42:1:36:42:1496:-131.325,-9.34602,0	1/1:50:0,50:0:0:50:1763:-158.941,-15.0515,0	0/1:133:94,39:94:3331:39:1388:-85.174,0,-259.97	1/1:14:0,14:0:0:14:504:-45.695,-4.21442,0	0/1:38:11,27:11:379:27:948:-74.1918,0,-23.0014	1/1:21:1,20:1:36:20:712:-60.8062,-2.72336,0	1/1:22:0,22:0:0:22:784:-70.8829,-6.62266,0	0/1:60:29,31:29:1032:31:1105:-81.6943,0,-74.8136	0/1:87:43,44:43:1540:44:1546:-113.232,0,-112.703	1/1:61:0,60:0:0:60:2114:-190.115,-18.0618,0	0/1:65:39,26:39:1350:26:928:-64.2713,0,-102.227	0/1:45:22,23:22:758:23:805:-59.1329,0,-54.9903	1/1:35:0,35:0:0:35:1241:-111.992,-10.5361,0	1/1:17:0,17:0:0:17:603:-54.5995,-5.11751,0	0/1:50:32,18:32:1152:18:639:-42.7821,0,-88.9386	0/1:63:37,26:37:1328:26:923:-64.421,0,-100.857	0/1:67:28,39:28:1004:39:1389:-105.044,0,-70.5069	0/1:38:15,23:15:527:23:815:-62.2246,0,-36.2344	0/1:27:18,9:18:631:9:320:-21.0145,0,-48.9879	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	0/1:51:21,30:21:738:30:1068:-81.0795,0,-51.3889	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:24:0,24:0:0:24:851:-76.8852,-7.22472,0	1/1:21:0,21:0:0:21:756:-68.3663,-6.32163,0	0/1:24:9,15:9:320:15:523:-40.1731,0,-21.9176	0/1:66:43,23:43:1536:23:819:-54.162,0,-118.665	0/1:28:14,14:14:500:14:496:-36.545,0,-36.9073	1/1:11:0,11:0:0:11:392:-34.9878,-3.31133,0	1/1:41:0,41:0:0:41:1454:-131.152,-12.3422,0
chr01	33184290	.	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chr01	33216349	.	A	G	103788	PASS	AB=0.517308;ABP=25.9363;AC=43;AF=0.228723;AN=188;AO=4591;CIGAR=1X;DP=18455;DPB=18455;DPRA=1.32677;EPP=9972.24;EPPR=30090.9;GTI=3;LEN=1;MEANALT=1;MQM=52.7942;MQMR=59.9645;NS=94;NUMALT=1;ODDS=1.54558;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163344;QR=494421;RO=13864;RPL=2521;RPP=99.2158;RPPR=3.01093;RPR=2070;RUN=1;SAF=2521;SAP=99.2158;SAR=2070;SRF=6935;SRP=3.01594;SRR=6929;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:129:72,57:72:2584:57:2036:-143.487,0,-193.976	0/1:289:123,166:123:4389:166:5937:-444.369,0,-308.185	0/0:349:349,0:349:12402:0:0:0,-105.059,-1116.01	0/0:393:393,0:393:13986:0:0:0,-118.305,-1258.51	0/1:108:62,46:62:2216:46:1644:-113.056,0,-167.193	0/1:45:29,16:29:1044:16:576:-38.4826,0,-80.7285	0/1:214:92,122:92:3296:122:4368:-325.502,0,-232.425	0/0:388:385,3:385:13754:3:108:0,-106.724,-1227.54	0/1:238:138,100:138:4901:100:3569:-248.423,0,-369.596	0/0:224:221,3:221:7859:3:108:0,-57.3849,-697.29	0/0:109:109,0:109:3867:0:0:0,-32.8123,-348.223	0/0:220:220,0:220:7859:0:0:0,-66.2266,-707.332	0/0:188:188,0:188:6710:0:0:0,-56.5936,-603.975	0/1:156:73,83:73:2592:83:2955:-217.776,0,-186.559	0/0:177:177,0:177:6314:0:0:0,-53.2823,-568.339	0/0:173:173,0:173:6163:0:0:0,-52.0782,-554.769	0/0:112:112,0:112:4009:0:0:0,-33.7154,-360.997	0/0:122:122,0:122:4375:0:0:0,-36.7257,-393.914	0/1:85:40,45:40:1428:45:1612:-117.401,0,-102.738	0/1:644:344,300:344:12239:300:10599:-753.636,0,-907.462	0/1:363:140,223:140:4984:223:7840:-590.994,0,-339.428	0/1:111:44,67:44:1565:67:2372:-178.709,0,-107.725	0/0:156:156,0:156:5565:0:0:0,-46.9607,-500.972	0/0:176:163,13:163:5784:13:464:0,-11.1109,-478.805	0/0:216:216,0:216:7738:0:0:0,-65.0225,-696.45	0/1:584:293,291:293:10434:291:10305:-744.606,0,-763.165	0/0:481:481,0:481:17186:0:0:0,-144.795,-1546.37	0/0:84:84,0:84:2988:0:0:0,-25.2865,-269.151	0/0:484:482,2:482:17227:2:72:0,-138.922,-1543.28	0/0:139:138,1:138:4935:1:36:0,-38.2697,-440.727	0/0:186:186,0:186:6635:0:0:0,-55.9916,-597.229	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:17:8,9:8:288:9:313:-23.3048,0,-21.1499	0/1:12:5,7:5:180:7:252:-19.3096,0,-12.9397	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:399:185,214:185:6615:214:7609:-559.115,0,-475.316	0/1:238:117,121:117:4200:121:4304:-311.718,0,-306.45	0/1:133:55,78:55:1934:78:2764:-207.704,0,-134.298	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:437:228,209:228:8160:209:7464:-533.964,0,-602.836	0/1:79:33,46:33:1173:46:1639:-122.2,0,-82.0942	0/0:375:375,0:375:13340:0:0:0,-112.886,-1200.37	0/0:148:148,0:148:5303:0:0:0,-44.5524,-477.403	0/0:140:140,0:140:5017:0:0:0,-42.1442,-451.674	0/0:199:199,0:199:7100:0:0:0,-59.905,-639.06	0/0:196:196,0:196:7004:0:0:0,-59.0019,-630.414	0/1:308:142,166:142:5092:166:5888:-433.291,0,-365.7	0/0:187:186,1:186:6663:1:36:0,-52.7258,-596.158	0/1:285:151,134:151:5390:134:4790:-341.22,0,-399.436	0/1:171:100,71:100:3566:71:2504:-172.253,0,-269.671	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:261:261,0:261:9300:0:0:0,-78.5688,-836.782	0/0:99:99,0:99:3524:0:0:0,-29.802,-317.369	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:291:291,0:291:10391:0:0:0,-87.5997,-935.098	0/0:85:84,1:84:3002:1:36:0,-22.0207,-266.844	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:16:8,8:8:284:8:288:-21.3361,0,-21.0869	0/0:110:110,0:110:3902:0:0:0,-33.1133,-351.045	0/0:193:193,0:193:6893:0:0:0,-58.0988,-620.438	1/1:4:0,4:0:0:4:144:-13.2263,-1.20412,0	0/0:306:305,1:305:10918:1:36:0,-88.5169,-978.918	0/1:348:162,186:162:5785:186:6563:-480.812,0,-416.006	0/0:138:138,0:138:4895:0:0:0,-41.5421,-440.703	0/0:202:202,0:202:7201:0:0:0,-60.8081,-648.144	0/0:330:329,1:329:11668:1:36:0,-95.7731,-1046.42	0/1:224:77,147:77:2719:147:5222:-400.499,0,-177.519	0/0:101:100,1:100:3565:1:36:0,-26.8306,-317.484	0/1:148:79,69:79:2815:69:2456:-175.243,0,-208.992	0/0:144:144,0:144:5122:0:0:0,-43.3483,-461.12	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:165:86,79:86:3055:79:2790:-200.484,0,-225.497	0/1:179:74,105:74:2636:105:3755:-281.787,0,-183.603	0/0:314:314,0:314:11154:0:0:0,-94.5234,-1003.75	0/1:308:150,158:150:5362:158:5668:-413.767,0,-389.995	0/1:188:119,69:119:4251:69:2471:-163.982,0,-326.167	0/0:276:275,1:275:9808:1:36:0,-79.5055,-879.087	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:264:139,125:139:4961:125:4452:-317.628,0,-367.167	0/1:259:140,119:140:5028:119:4203:-299.036,0,-374.689	0/1:520:252,268:252:8984:268:9559:-696.365,0,-651.98	0/1:152:60,92:60:2110:92:3296:-247.588,0,-144.409	0/1:190:97,93:97:3475:93:3320:-239.804,0,-255.765	0/0:187:187,0:187:6678:0:0:0,-56.2926,-601.091	0/1:291:134,157:134:4784:157:5605:-412.391,0,-343.116	0/1:59:26,33:26:936:33:1184:-88.3675,0,-66.7987	0/0:138:138,0:138:4849:0:0:0,-41.5421,-436.565	0/0:143:143,0:143:5101:0:0:0,-43.0473,-459.225	0/1:94:45,49:45:1607:49:1760:-129.318,0,-116.623	0/1:161:64,97:64:2268:97:3448:-260.686,0,-155.915	0/1:196:65,131:65:2316:131:4708:-361.777,0,-149.699	0/0:332:331,1:331:11802:1:36:0,-96.3437,-1058.11	0/0:267:267,0:267:9527:0:0:0,-80.375,-857.38
chr01	33216372	.	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chr01	33244684	.	T	C	9977.22	PASS	AB=0.291952;ABP=1156.83;AC=39;AF=0.209677;AN=186;AO=909;CIGAR=1X;DP=6724;DPB=6724;DPRA=1.17467;EPP=1976.88;EPPR=12617.1;GTI=5;LEN=1;MEANALT=1.02222;MQM=43.3575;MQMR=57.8037;NS=93;NUMALT=1;ODDS=1.026;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32532;QR=207909;RO=5813;RPL=0;RPP=1976.88;RPPR=12625.8;RPR=909;RUN=1;SAF=909;SAP=1976.88;SAR=0;SRF=5812;SRP=12617.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:37,10:37:1320:10:360:-17.5259,0,-104.741	0/1:29:24,5:24:860:5:180:-7.28133,0,-67.3467	0/0:84:84,0:84:3012:0:0:0,-25.2865,-270.366	0/0:88:87,1:87:3113:1:36:0,-22.9696,-274.882	0/1:29:25,4:25:900:4:140:-3.93295,0,-71.8234	0/1:33:26,7:26:917:7:252:-12.2573,0,-71.5434	0/1:46:35,11:35:1252:11:396:-21.0047,0,-99.023	0/0:55:53,2:53:1904:2:72:0,-9.94333,-164.996	0/0:65:61,4:61:2181:4:144:0,-6.68838,-182.687	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:97:97,0:97:3449:0:0:0,-29.1999,-308.618	0/0:138:137,1:137:4884:1:36:0,-38.0614,-435.208	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.353	0/1:112:84,28:84:2998:28:1000:-53.9805,0,-233.36	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.922	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.777	0/1:45:28,17:28:1004:17:612:-40.1344,0,-76.3399	0/1:79:63,16:63:2268:16:572:-27.3013,0,-179.536	0/1:111:76,35:76:2728:35:1244:-76.3431,0,-208.988	0/1:77:63,14:63:2260:14:500:-21.0696,0,-177.996	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:53:53,0:53:1900:0:0:0,-15.9546,-169.357	0/0:47:46,0:46:1656:0:0:0,-13.8474,-149.115	0/1:120:81,39:81:2881:39:1400:-88.082,0,-221.578	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.039	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:147:147,0:147:5261:0:0:0,-44.2514,-473.079	0/0:102:102,0:102:3592:0:0:0,-30.7051,-323.456	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.652	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.93094	0/1:5:1,4:1:36:4:144:-11.3734,0,-1.97555	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:234:167,67:167:5996:67:2404:-144.152,0,-466.702	0/1:72:44,28:44:1568:28:1000:-65.1525,0,-116.018	0/1:85:59,26:59:2089:26:932:-55.8244,0,-159.541	.:.:.:.:.:.:.:.	0/1:94:68,26:68:2425:26:936:-53.3242,0,-188.575	0/1:62:47,15:47:1688:15:540:-29.1167,0,-132.426	0/0:82:82,0:82:2917:0:0:0,-24.6845,-262.76	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:64:64,0:64:2250:0:0:0,-19.2659,-202.76	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.6	0/1:76:49,27:49:1752:27:968:-63.1245,0,-133.465	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/1:78:57,21:57:2044:21:752:-43.0447,0,-159.945	0/1:52:30,22:30:1072:22:788:-53.7079,0,-80.8875	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:68:67,1:67:2404:1:32:0,-17.3215,-213.422	0/0:59:59,0:59:2111:0:0:0,-17.7608,-189.887	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.859	0/0:23:23,0:23:820:0:0:0,-6.92369,-73.9925	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:6,5:6:216:5:180:-13.0792,0,-16.3516	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.741	0/0:151:151,0:151:5416:0:0:0,-45.4555,-486.378	0/1:4:3,1:3:108:1:36:-2.3444,0,-8.79702	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/1:75:56,19:56:2012:19:676:-37.7023,0,-157.12	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.021	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.248	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/1:138:83,55:83:2954:55:1976:-132.968,0,-221.401	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.64	0/0:41:37,4:37:1319:4:144:0,-0.152313,-105.517	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.289	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:74:54,20:54:1917:20:712:-39.4257,0,-149.171	0/1:47:39,8:39:1396:8:288:-11.1757,0,-110.937	0/0:164:164,0:164:5857:0:0:0,-49.3689,-527.193	0/1:122:101,21:101:3636:21:756:-30.5601,0,-288.352	0/1:49:33,16:33:1158:16:559:-34.3947,0,-89.2856	0/1:60:39,21:39:1373:21:741:-46.6499,0,-104.29	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:49:34,15:34:1190:15:536:-31.693,0,-92.1662	0/1:49:32,17:32:1148:17:608:-37.8769,0,-88.0837	0/1:77:62,15:62:2203:15:532:-22.4814,0,-174.93	0/1:99:69,30:69:2472:30:1080:-65.7169,0,-191.379	0/1:112:68,44:68:2440:44:1584:-106.226,0,-184.821	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.093	0/1:184:138,46:138:4937:46:1647:-90.8081,0,-384.452	0/1:37:30,7:30:1076:7:252:-11.2958,0,-84.5808	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.566	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.328	0/1:98:64,34:64:2292:34:1224:-78.2429,0,-175.136	0/1:213:142,70:142:5104:70:2493:-154.414,0,-390.708	0/1:85:55,30:55:1968:30:1068:-69.4891,0,-150.647	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.436
chr01	33244701	.	CGTA	GGTG,CGTG	155327	PASS	AB=0.768674,0.227048;ABP=1908.45,1969.61;AC=148,38;AF=0.795699,0.204301;AN=186;AO=6215,714;CIGAR=1X2M1X,3M1X;DP=6968;DPB=6968.75;DPRA=0,1.13046;EPP=11089.5,1311.78;EPPR=7.35324;GTI=10;LEN=4,1;MEANALT=1.86022,2.28261;MQM=57.4245,43.5938;MQMR=60;NS=93;NUMALT=2;ODDS=1429.84;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=99,0;PQR=0;PRO=0;QA=217514,25456;QR=71;RO=2;RPL=292,29;RPP=11081.6,1311.78;RPPR=7.35324;RPR=5923,685;RUN=1,1;SAF=6214,714;SAP=13490,1553.44;SAR=1,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,52,3:0:0:52,3:1811,100:-162.238,-15.6536,0,-155.075,-8.18878,-154.172	1/2:31:0,20,11:0:0:20,11:711,396:-88.3273,-30.9565,-24.9359,-57.7169,0,-54.4055	1/1:88:0,86,0:0:0:86,0:3012,0:-271.059,-25.8886,0,-271.059,-25.8886,-271.059	1/1:91:0,90,0:0:0:90,0:3190,0:-284.965,-27.0927,0,-284.965,-27.0927,-284.965	1/2:36:0,32,4:0:0:32,4:1128,144:-102.927,-11.3239,-1.69091,-91.9432,0,-90.7391	1/2:38:0,29,9:0:0:29,9:1012,324:-106.805,-25.3144,-16.5845,-81.8328,0,-79.1235	1/2:45:0,40,5:0:0:40,5:1376,167:-124.415,-13.743,-1.70177,-111.005,0,-109.499	1/1:60:0,60,0:0:0:60,0:2064,0:-185.808,-18.0618,0,-185.808,-18.0618,-185.808	1/1:76:0,67,7:0:0:67,7:2306,247:-207.04,-20.169,0,-187.541,-0.636944,-185.434	1/1:42:0,42,0:0:0:42,0:1456,0:-131.33,-12.6433,0,-131.33,-12.6433,-131.33	1/1:101:0,101,0:0:0:101,0:3560,0:-318.604,-30.404,0,-318.604,-30.404,-318.604	1/1:140:0,139,0:0:0:139,0:4846,0:-435.878,-41.8432,0,-435.878,-41.8432,-435.878	1/1:107:0,107,0:0:0:107,0:3704,0:-333.566,-32.2102,0,-333.566,-32.2102,-333.566	1/2:117:0,81,35:0:0:81,35:2842,1236:-327.403,-98.3867,-74.0033,-229.086,0,-218.55	1/1:82:0,82,0:0:0:82,0:2895,0:-260.787,-24.6845,0,-260.787,-24.6845,-260.787	1/1:107:0,107,0:0:0:107,0:3723,0:-335.268,-32.2102,0,-335.268,-32.2102,-335.268	1/1:50:0,50,0:0:0:50,0:1700,0:-153.281,-15.0515,0,-153.281,-15.0515,-153.281	1/1:50:0,50,0:0:0:50,0:1752,0:-157.956,-15.0515,0,-157.956,-15.0515,-157.956	1/2:46:0,38,8:0:0:38,8:1334,288:-129.989,-23.0008,-11.5617,-107.336,0,-104.928	1/2:79:0,58,20:0:0:58,20:2025,720:-221.629,-57.646,-40.1862,-163.975,0,-157.955	1/2:113:0,96,17:0:0:96,17:3407,600:-320.94,-45.9076,-17.0087,-275.01,0,-269.892	1/2:75:0,49,25:0:0:49,25:1709,892:-209.305,-71.1548,-56.4043,-138.14,0,-130.614	1/1:57:0,56,0:0:0:56,0:1987,0:-178.803,-16.8577,0,-178.803,-16.8577,-178.803	1/1:55:0,52,3:0:0:52,3:1807,108:-162.586,-15.6536,0,-155.661,-8.43489,-154.758	1/1:51:0,51,0:0:0:51,0:1804,0:-162.641,-15.3525,0,-162.641,-15.3525,-162.641	1/2:123:0,94,29:0:0:94,29:3298,1036:-349.316,-82.9922,-54.6954,-266.674,0,-257.944	1/1:122:0,121,1:0:0:121,1:4252,36:-382.512,-36.4246,0,-379.644,-33.2047,-379.343	1/1:53:0,53,0:0:0:53,0:1874,0:-168.938,-15.9546,0,-168.938,-15.9546,-168.938	1/1:151:0,149,0:0:0:149,0:5178,0:-465.743,-44.8535,0,-465.743,-44.8535,-465.743	1/1:109:0,109,0:0:0:109,0:3791,0:-341.387,-32.8123,0,-341.387,-32.8123,-341.387	1/1:67:0,67,0:0:0:67,0:2332,0:-210.138,-20.169,0,-210.138,-20.169,-210.138	1/1:5:0,4,0:0:0:4,0:138,0:-12.4033,-1.20412,0,-12.4033,-1.20412,-12.4033	1/2:4:0,2,2:0:0:2,2:69,72:-11.69,-6.08786,-5.4858,-5.9506,0,-5.34854	1/2:4:0,3,1:0:0:3,1:107,36:-11.6023,-3.17967,-2.27658,-8.77007,0,-8.46904	1/1:9:0,9,0:0:0:9,0:305,0:-27.7784,-2.70927,0,-27.7784,-2.70927,-27.7784	1/1:12:0,12,0:0:0:12,0:424,0:-38.4963,-3.61236,0,-38.4963,-3.61236,-38.4963	1/2:237:0,192,45:0:0:192,45:6716,1611:-673.503,-129.107,-71.3093,-544.747,0,-531.2	1/2:71:0,50,21:0:0:50,21:1756,756:-199.355,-59.2585,-44.207,-140.441,0,-134.119	1/2:85:0,64,21:0:0:64,21:2245,744:-238.015,-57.8987,-38.6328,-180.456,0,-174.134	.:.:.:.:.:.:.:.	1/2:102:0,87,15:0:0:87,15:3010,528:-283.518,-41.715,-15.5254,-242.143,0,-237.628	1/2:63:0,46,16:0:0:46,16:1611,572:-175.565,-45.5579,-31.7105,-129.998,0,-125.181	1/1:87:0,86,0:0:0:86,0:2997,0:-269.672,-25.8886,0,-269.672,-25.8886,-269.672	1/1:82:0,81,0:0:0:81,0:2817,0:-253.479,-24.3834,0,-253.479,-24.3834,-253.479	1/1:82:0,82,0:0:0:82,0:2833,0:-255.21,-24.6845,0,-255.21,-24.6845,-255.21	1/1:65:0,65,0:0:0:65,0:2272,0:-204.741,-19.567,0,-204.741,-19.567,-204.741	1/1:83:0,82,0:0:0:82,0:2879,0:-258.965,-24.6845,0,-258.965,-24.6845,-258.965	1/2:82:0,64,17:0:0:64,17:2196,593:-223.828,-46.8055,-27.5396,-177.092,0,-171.975	1/1:55:0,55,0:0:0:55,0:1962,0:-176.855,-16.5567,0,-176.855,-16.5567,-176.855	1/2:78:0,59,19:0:0:59,19:2066,684:-222.085,-55.3611,-37.6004,-167.077,0,-161.358	1/2:53:0,46,7:0:0:46,7:1632,252:-151.987,-20.6218,-6.77438,-131.72,0,-129.613	1/1:8:0,8,0:0:0:8,0:287,0:-26.1765,-2.40824,0,-26.1765,-2.40824,-26.1765	1/1:70:0,69,1:0:0:69,1:2419,36:-217.576,-20.7711,0,-216.265,-19.5484,-215.964	1/1:60:0,59,0:0:0:59,0:2057,0:-184.668,-17.7608,0,-184.668,-17.7608,-184.668	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:86:0,86,0:0:0:86,0:3009,0:-271.034,-25.8886,0,-271.034,-25.8886,-271.034	1/1:24:0,23,0:0:0:23,0:787,0:-70.832,-6.92369,0,-70.832,-6.92369,-70.832	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:11:0,8,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chr01	33244716	.	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chr01	33272882	.	A	T	123327	PASS	AB=0.465374;ABP=40.605;AC=145;AF=0.771277;AN=188;AO=5798;CIGAR=1X;DP=7751;DPB=7751;DPRA=41.6613;EPP=12402.8;EPPR=4073.64;GTI=2;LEN=1;MEANALT=1.09677;MQM=59.5219;MQMR=59.9629;NS=94;NUMALT=1;ODDS=1.15582;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206899;QR=69554;RO=1942;RPL=5776;RPP=12402.8;RPPR=4073.64;RPR=22;RUN=1;SAF=0;SAP=12593.2;SAR=5798;SRF=0;SRP=4220.01;SRR=1942;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:35,39:35:1256:39:1389:-103.013,0,-91.0691	0/1:70:45,25:45:1612:25:892:-59.5276,0,-124.298	1/1:193:0,192:0:0:192:6854:-616.551,-57.7978,0	1/1:215:0,215:0:0:215:7672:-690.314,-64.7215,0	0/1:45:30,15:30:1076:15:525:-34.0317,0,-83.6065	0/1:26:13,13:13:468:13:464:-34.2353,0,-34.6329	0/1:29:9,20:9:324:20:716:-56.0378,0,-20.776	1/1:182:0,181:0:0:181:6467:-581.67,-54.4864,0	0/1:83:45,38:45:1593:38:1360:-97.6975,0,-118.673	1/1:96:1,95:1:32:95:3382:-301.063,-25.6996,0	1/1:38:0,38:0:0:38:1360:-122.621,-11.4391,0	1/1:74:0,74:0:0:74:2633:-237.216,-22.2762,0	1/1:75:0,75:0:0:75:2688:-242.051,-22.5773,0	0/1:75:34,41:34:1224:41:1442:-107.472,0,-87.8898	1/1:50:0,50:0:0:50:1788:-161.201,-15.0515,0	1/1:66:0,66:0:0:66:2342:-210.906,-19.868,0	1/1:40:0,40:0:0:40:1412:-127.361,-12.0412,0	1/1:41:0,41:0:0:41:1464:-132.021,-12.3422,0	0/1:30:17,12:17:608:12:432:-30.1315,0,-45.9625	0/1:131:93,38:93:3328:38:1368:-83.9722,0,-260.303	0/1:66:29,37:29:1040:37:1298:-97.2275,0,-74.0464	0/1:125:86,39:86:3075:39:1387:-87.4668,0,-239.346	1/1:102:1,101:1:36:101:3628:-323.098,-27.1068,0	1/1:105:3,102:3:108:102:3652:-318.527,-21.533,0	1/1:106:0,106:0:0:106:3800:-342.15,-31.9092,0	0/1:187:100,87:100:3576:87:3097:-222.576,0,-265.755	1/1:248:3,245:3:108:245:8739:-776.134,-64.5803,0	1/1:28:0,28:0:0:28:1008:-91.015,-8.42884,0	1/1:204:0,202:0:0:202:7199:-647.373,-60.8081,0	1/1:110:1,109:1:36:109:3870:-344.87,-29.515,0	1/1:99:0,99:0:0:99:3521:-317.017,-29.802,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:13:8,5:8:284:5:176:-12.2564,0,-21.99	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:6:0,6:0:0:6:208:-19.0519,-1.80618,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:136:66,70:66:2372:70:2516:-185.723,0,-172.793	0/1:162:88,74:88:3152:74:2580:-183.648,0,-235.138	0/1:29:15,14:15:536:14:504:-36.9505,0,-38.9831	1/1:2:0,2:0:0:2:72:-6.82552,-0.60206,0	0/1:104:55,49:55:1980:49:1764:-127.715,0,-147.167	0/1:23:10,13:10:360:13:464:-35.1738,0,-25.8206	1/1:184:0,184:0:0:184:6562:-590.446,-55.3895,0	1/1:38:0,38:0:0:38:1360:-122.687,-11.4391,0	1/1:51:0,50:0:0:50:1793:-161.217,-15.0515,0	1/1:90:0,90:0:0:90:3209:-288.947,-27.0927,0	1/1:115:0,114:0:0:114:4054:-364.631,-34.3174,0	0/1:165:98,66:98:3520:66:2356:-162.543,0,-267.28	1/1:111:0,109:0:0:109:3897:-350.507,-32.8123,0	0/1:142:79,63:79:2836:63:2248:-159.548,0,-212.505	0/1:122:51,71:51:1836:71:2537:-191.195,0,-128.795	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:119:0,119:0:0:119:4272:-384.578,-35.8226,0	1/1:43:0,43:0:0:43:1544:-139.242,-12.9443,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:124:0,124:0:0:124:4421:-397.988,-37.3277,0	1/1:50:0,50:0:0:50:1791:-161.465,-15.0515,0	1/1:6:0,6:0:0:6:201:-18.4062,-1.80618,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:97:0,97:0:0:97:3469:-312.415,-29.1999,0	1/1:51:0,51:0:0:51:1818:-163.65,-15.3525,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:150:0,150:0:0:150:5369:-483.221,-45.1545,0	0/1:101:47,54:47:1683:54:1940:-144.472,0,-121.352	1/1:61:0,61:0:0:61:2172:-195.681,-18.3628,0	1/1:95:0,95:0:0:95:3392:-305.455,-28.5979,0	1/1:75:1,74:1:36:74:2648:-234.905,-18.979,0	0/1:126:92,34:92:3304:34:1210:-71.2603,0,-259.648	1/1:28:1,27:1:36:27:968:-83.8071,-4.83057,0	0/1:35:11,24:11:377:24:860:-66.8498,0,-23.7219	1/1:36:0,36:0:0:36:1277:-115.22,-10.8371,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:83:43,40:43:1535:40:1412:-102.282,0,-113.457	0/1:110:49,61:49:1749:61:2163:-161.799,0,-124.579	1/1:146:2,144:2:72:144:5147:-455.963,-37.1137,0	0/1:135:76,59:76:2728:59:2105:-148.888,0,-205.124	0/1:173:100,73:100:3583:73:2608:-182.682,0,-270.598	0/1:112:56,56:56:1994:56:2009:-147.359,0,-146.017	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:103:71,32:71:2544:32:1152:-72.9734,0,-198.205	0/1:137:70,67:70:2504:67:2393:-174.349,0,-184.371	0/1:198:89,108:89:3200:108:3860:-287.879,0,-228.559	0/1:44:20,24:20:712:24:845:-63.0993,0,-51.1613	0/1:65:30,35:30:1062:35:1252:-93.3769,0,-76.323	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:102:39,63:39:1400:63:2241:-171.216,0,-95.5941	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	1/1:54:0,54:0:0:54:1937:-174.567,-16.2556,0	1/1:61:0,61:0:0:61:2192:-197.475,-18.3628,0	0/1:44:27,17:27:972:17:608:-41.8067,0,-74.5526	0/1:113:42,71:42:1508:71:2513:-192.33,0,-101.998	0/1:63:43,20:43:1531:20:720:-46.1639,0,-119.117	1/1:74:0,74:0:0:74:2644:-238.179,-22.2762,0	1/1:95:0,95:0:0:95:3377:-304.041,-28.5979,0
chr01	33272885	.	C	G	33639.1	PASS	AB=0.534445;ABP=40.7077;AC=43;AF=0.228723;AN=188;AO=1967;CIGAR=1X;DP=7857;DPB=7857;DPRA=1.09445;EPP=4274.3;EPPR=12786.5;GTI=2;LEN=1;MEANALT=1.0625;MQM=59.9466;MQMR=59.5251;NS=94;NUMALT=1;ODDS=1.12803;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70280;QR=210816;RO=5887;RPL=1967;RPP=4274.3;RPPR=12786.5;RPR=0;RUN=1;SAF=0;SAP=4274.3;SAR=1967;SRF=0;SRP=12786.5;SRR=5887;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:37,35:37:1332:35:1238:-90.0495,0,-98.4906	0/1:71:26,45:26:928:45:1612:-123.997,0,-62.4651	0/0:199:199,0:199:7141:0:0:0,-59.905,-642.498	0/0:215:215,0:215:7707:0:0:0,-64.7214,-693.415	0/1:46:16,30:16:576:30:1071:-82.8542,0,-38.3276	0/1:26:13,13:13:464:13:468:-34.6329,0,-34.2353	0/1:29:20,9:20:720:9:324:-20.776,0,-56.3989	0/0:183:183,0:183:6530:0:0:0,-55.0885,-587.666	0/1:87:41,46:41:1468:46:1648:-122.419,0,-106.209	0/0:97:95,2:95:3416:2:72:0,-22.3776,-300.513	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.99	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.935	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.358	0/1:76:41,35:41:1476:35:1260:-90.8272,0,-110.208	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.682	0/0:68:68,0:68:2436:0:0:0,-20.47,-218.475	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.88	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.339	0/1:32:13,19:13:468:19:680:-51.8962,0,-32.8267	0/1:133:41,92:41:1464:92:3291:-256.372,0,-91.9962	0/1:65:36,29:36:1277:29:1044:-74.7079,0,-95.6429	0/1:124:34,90:34:1224:90:3193:-250.263,0,-73.1074	0/0:105:104,1:104:3721:1:36:0,-28.0099,-331.464	0/0:106:102,4:102:3656:4:144:0,-18.5956,-315.649	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.673	0/1:188:88,100:88:3152:100:3558:-263.834,0,-227.233	0/0:248:248,0:248:8882:0:0:0,-74.6554,-799.281	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.015	0/0:207:207,0:207:7409:0:0:0,-62.3132,-666.626	0/0:111:110,1:110:3922:1:36:0,-29.8161,-349.54	0/0:101:101,0:101:3636:0:0:0,-30.404,-327.36	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:13:5,8:5:180:8:288:-22.354,0,-12.617	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4069	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:138:71,67:71:2547:67:2412:-175.794,0,-187.888	0/1:161:72,88:72:2569:88:3149:-235.11,0,-182.866	0/1:29:14,15:14:504:15:529:-38.58,0,-36.9505	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82552	0/1:106:49,57:49:1760:57:2048:-152.682,0,-126.753	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1616	0/0:186:186,0:186:6669:0:0:0,-55.9916,-600.26	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.407	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.555	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.784	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.537	0/1:166:67,98:67:2404:98:3492:-264.462,0,-166.573	0/0:112:112,0:112:3955:0:0:0,-33.7154,-356.069	0/1:141:61,80:61:2192:80:2823:-211.616,0,-154.84	0/1:129:76,52:76:2709:52:1864:-129.148,0,-204.758	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:122:122,0:122:4388:0:0:0,-36.7257,-394.998	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.242	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:124:124,0:124:4429:0:0:0,-37.3277,-398.706	0/0:52:52,0:52:1838:0:0:0,-15.6536,-165.674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7797	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/0:98:98,0:98:3509:0:0:0,-29.5009,-316.009	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.703	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/0:151:151,0:151:5424:0:0:0,-45.4555,-488.175	0/1:104:56,48:56:2008:48:1728:-124.498,0,-149.686	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.401	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.847	0/0:81:80,1:80:2849:1:36:0,-20.7852,-252.986	0/1:127:33,94:33:1188:94:3357:-264.115,0,-68.9703	0/0:29:28,1:28:1008:1:36:0,-5.13159,-87.1783	0/1:35:24,11:24:860:11:396:-25.4467,0,-67.0093	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.451	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:86:41,45:41:1468:45:1612:-119.481,0,-106.408	0/1:111:62,49:62:2216:49:1750:-124.369,0,-166.114	0/0:148:148,0:148:5274:0:0:0,-44.5524,-473.49	0/1:132:61,71:61:2196:71:2539:-189.024,0,-157.979	0/1:179:76,103:76:2717:103:3688:-278.238,0,-190.5	0/1:118:58,60:58:2088:60:2148:-158.066,0,-152.651	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:103:34,69:34:1224:69:2445:-189.295,0,-79.4503	0/1:137:68,69:68:2435:69:2476:-181.852,0,-178.128	0/1:203:108,95:108:3850:95:3387:-243.937,0,-285.543	0/1:45:25,20:25:896:20:720:-51.5824,0,-67.3915	0/1:65:35,30:35:1260:30:1068:-76.8651,0,-94.0973	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/1:103:63,40:63:2268:40:1440:-98.8916,0,-173.345	0/1:6:3,3:3:93:3:108:-8.26899,0,-6.87055	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.472	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.714	0/1:43:18,25:18:648:25:900:-68.3767,0,-45.7076	0/1:115:70,45:70:2504:45:1607:-110.301,0,-190.454	0/1:66:20,46:20:716:46:1627:-126.848,0,-44.8997	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.379	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.827
chr01	33286630	.	C	G	30717.1	PASS	AB=0.539854;ABP=50.2622;AC=42;AF=0.223404;AN=188;AO=1855;CIGAR=1X;DP=6874;DPB=6874;DPRA=1.43541;EPP=4031.09;EPPR=10890.8;GTI=3;LEN=1;MEANALT=1.0625;MQM=59.9768;MQMR=59.9896;NS=94;NUMALT=1;ODDS=0.544578;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65089;QR=178303;RO=5014;RPL=0;RPP=4031.09;RPPR=10890.8;RPR=1855;RUN=1;SAF=0;SAP=4031.09;SAR=1855;SRF=0;SRP=10890.8;SRR=5014;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:9,10:9:311:10:341:-25.2982,0,-22.6042	0/1:42:18,24:18:648:24:856:-64.7178,0,-46.0086	0/0:105:105,0:105:3703:0:0:0,-31.6081,-333.473	0/0:222:220,1:220:7792:1:32:0,-63.6682,-698.1	0/1:27:15,12:15:536:12:432:-31.0934,0,-40.4424	0/1:12:7,5:7:239:5:171:-12.1131,0,-18.2304	0/1:72:26,46:26:928:46:1631:-125.404,0,-62.1641	0/0:63:63,0:63:2231:0:0:0,-18.9649,-201.054	0/1:57:38,19:38:1351:19:672:-43.6481,0,-104.731	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.662	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.12	0/1:61:28,33:28:1000:33:1148:-85.2611,0,-71.9525	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:53:53,0:53:1878:0:0:0,-15.9546,-169.297	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:24:11,13:11:396:13:464:-34.8728,0,-28.758	0/1:127:73,54:73:2574:54:1909:-133.854,0,-193.679	0/1:81:33,48:33:1146:48:1691:-128.092,0,-79.0608	0/1:86:31,55:31:1112:55:1917:-146.912,0,-74.5028	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.349	0/0:16:15,1:15:531:1:36:0,-1.2182,-44.5236	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:223:108,115:108:3844:115:4004:-293.42,0,-279.026	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.898	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:191:191,0:191:6815:0:0:0,-57.4967,-613.424	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:109:109,0:109:3850:0:0:0,-32.8123,-346.7	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:6:3,2:3:104:2:68:-4.59938,0,-7.82611	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:173:84,89:84:2963:89:3136:-230.389,0,-214.824	0/1:127:52,75:52:1856:75:2602:-196.196,0,-129.089	0/1:40:21,19:21:748:19:675:-49.0342,0,-55.6041	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:144:71,73:71:2521:73:2572:-188.374,0,-183.793	0/1:42:22,20:22:788:20:696:-50.3164,0,-58.6015	0/0:126:125,0:125:4449:0:0:0,-37.6287,-400.222	0/0:45:45,0:45:1596:0:0:0,-13.5463,-143.927	0/0:34:34,0:34:1192:0:0:0,-10.235,-107.582	0/0:95:95,0:95:3382:0:0:0,-28.5978,-304.596	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.869	0/1:151:61,90:61:2188:90:3149:-238.18,0,-151.73	0/0:106:105,1:105:3724:1:36:0,-28.3109,-331.764	0/1:150:65,85:65:2319:85:2988:-223.996,0,-163.815	0/1:84:34,49:34:1212:49:1739:-131.449,0,-84.0411	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:106:105,1:105:3754:1:36:0,-28.3109,-334.461	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:127:126,1:126:4482:1:27:0,-35.531,-400.851	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:80:80,0:80:2825:0:0:0,-24.0824,-254.488	0/0:103:103,0:103:3622:0:0:0,-31.0061,-326.187	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:132:132,0:132:4691:0:0:0,-39.736,-422.351	0/1:86:37,49:37:1316:49:1713:-128.562,0,-92.8532	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/0:107:107,0:107:3805:0:0:0,-32.2102,-342.648	0/0:120:119,1:119:4239:1:36:0,-32.5253,-378.093	0/1:147:48,99:48:1712:99:3499:-270.857,0,-110.114	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.319	0/1:45:15,30:15:536:30:1044:-80.7206,0,-35.0285	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:87:40,47:40:1420:47:1653:-122.866,0,-101.908	0/1:58:32,26:32:1129:26:902:-64.0298,0,-84.4566	0/0:100:100,0:100:3563:0:0:0,-30.103,-320.809	0/1:152:70,82:70:2492:82:2875:-213.231,0,-178.777	0/1:30:11,19:11:392:19:667:-51.3237,0,-26.5892	0/1:71:32,39:32:1152:39:1362:-101.504,0,-82.617	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:198:87,111:87:3097:111:3885:-290.245,0,-219.353	0/1:28:13,15:13:460:15:536:-40.146,0,-33.3065	0/1:163:79,84:79:2773:84:2927:-214.594,0,-200.742	0/1:52:31,21:31:1112:21:722:-49.644,0,-84.7378	0/1:66:24,42:24:860:42:1492:-114.707,0,-57.8539	0/0:46:46,0:46:1626:0:0:0,-13.8474,-146.627	0/1:164:83,81:83:2967:81:2840:-206.467,0,-217.894	0/1:13:5,8:5:180:8:276:-21.2619,0,-12.6387	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/0:39:39,0:39:1370:0:0:0,-11.7402,-123.597	0/1:66:26,40:26:911:40:1402:-106.603,0,-62.437	0/1:165:92,73:92:3304:73:2569:-181.788,0,-247.908	0/1:59:27,32:27:963:32:1125:-83.7953,0,-69.2252	0/0:154:154,0:154:5482:0:0:0,-46.3586,-493.507	0/0:95:94,0:94:3356:0:0:0,-28.2968,-301.898
chr01	33335506	.	G	A	18581.7	PASS	AB=0.436115;ABP=99.0073;AC=38;AF=0.208791;AN=182;AO=1202;CIGAR=1X;DP=6318;DPB=6318;DPRA=1.24642;EPP=2613.12;EPPR=11086.2;GTI=0;LEN=1;MEANALT=1.06977;MQM=59.99;MQMR=59.9812;NS=91;NUMALT=1;ODDS=9.65738;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42887;QR=182773;RO=5112;RPL=0;RPP=2613.12;RPPR=11094.9;RPR=1202;RUN=1;SAF=1202;SAP=2613.12;SAR=0;SRF=5111;SRP=11094.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:21,13:21:752:13:468:-32.2246,0,-57.7712	0/1:110:64,46:64:2300:46:1588:-110.088,0,-174.147	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.565	0/0:167:166,0:166:5927:0:0:0,-49.971,-533.175	0/1:41:24,17:24:845:17:612:-43.0712,0,-64.0249	0/1:50:27,22:27:968:22:792:-56.4954,0,-72.3271	0/1:84:51,33:51:1832:33:1188:-81.9421,0,-139.874	0/0:86:83,2:83:2988:2:72:0,-19.0841,-262.327	0/1:83:40,43:40:1421:43:1540:-113.908,0,-103.199	0/0:72:72,0:72:2577:0:0:0,-21.6742,-232.177	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.464	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:51:21,30:21:756:30:1080:-82.1607,0,-53.0147	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:105:71,34:71:2552:34:1186:-75.4326,0,-198.322	0/1:82:45,37:45:1601:37:1328:-95.1378,0,-119.694	0/1:89:36,53:36:1296:53:1885:-143.135,0,-90.1523	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.115	0/0:114:106,8:106:3797:8:288:0,-8.05001,-315.658	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:201:201,0:201:7167:0:0:0,-60.507,-645.067	0/0:172:172,0:172:6165:0:0:0,-51.7772,-554.946	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:137:137,0:137:4883:0:0:0,-41.2411,-439.619	0/0:103:103,0:103:3677:0:0:0,-31.0061,-331.132	0/0:113:113,0:113:4000:0:0:0,-34.0164,-360.186	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:176:174,2:174:6184:2:72:0,-46.1446,-549.818	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:113:64,49:64:2289:49:1756:-124.308,0,-172.253	0/1:118:68,50:68:2406:50:1769:-123.97,0,-181.272	0/1:34:18,16:18:648:16:576:-41.94,0,-48.4169	.:.:.:.:.:.:.:.	0/1:88:43,44:43:1544:44:1580:-115.942,0,-112.704	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/0:127:125,2:125:4450:2:72:0,-31.3941,-393.833	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:89:51,38:51:1821:38:1341:-94.1959,0,-137.378	0/0:78:78,0:78:2780:0:0:0,-23.4803,-250.439	0/1:62:45,17:45:1620:17:612:-36.7496,0,-127.426	0/1:153:89,64:89:3158:64:2300:-161.203,0,-238.386	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.179	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	.:.:.:.:.:.:.:.	0/0:182:182,0:182:6509:0:0:0,-54.7875,-585.893	0/1:128:77,51:77:2730:51:1779:-121.855,0,-207.409	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.392	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:122:115,7:115:4112:7:248:0,-14.0615,-347.601	0/1:88:52,36:52:1864:36:1292:-90.0931,0,-141.549	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:83:52,31:52:1868:31:1116:-75.7662,0,-143.414	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:93:54,39:54:1932:39:1396:-97.9433,0,-146.161	0/1:34:19,15:19:684:15:540:-38.7015,0,-51.6553	0/0:173:173,0:173:6155:0:0:0,-52.0782,-553.11	0/1:91:58,33:58:2069:33:1176:-78.7527,0,-159.085	0/1:82:47,35:47:1688:35:1260:-89.021,0,-127.522	0/1:69:46,23:46:1648:23:824:-53.7122,0,-127.837	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6972	0/1:58:34,24:34:1208:24:860:-60.2621,0,-91.5663	0/1:69:33,36:33:1173:36:1281:-94.8202,0,-85.1045	0/1:126:80,46:80:2849:46:1633:-109.327,0,-218.717	0/1:78:44,34:44:1576:34:1205:-85.2732,0,-118.565	0/1:36:18,18:18:639:18:648:-47.8148,0,-47.0012	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:79:42,37:42:1497:37:1324:-95.6807,0,-111.241	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/0:62:62,0:62:2217:0:0:0,-18.6639,-199.793	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:57:23,34:23:819:34:1216:-92.5879,0,-56.8729	0/1:33:10,23:10:356:23:824:-64.5493,0,-22.4473	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421
chr01	33342388	.	A	T	86555	PASS	AB=0.475166;ABP=16.7075;AC=146;AF=0.776596;AN=188;AO=4104;CIGAR=1X;DP=5452;DPB=5452;DPRA=0;EPP=8914.73;EPPR=2930.16;GTI=0;LEN=1;MEANALT=1;MQM=59.9929;MQMR=60;NS=94;NUMALT=1;ODDS=2.70475;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146532;QR=48206;RO=1348;RPL=4104;RPP=8914.73;RPPR=2930.16;RPR=0;RUN=1;SAF=0;SAP=8914.73;SAR=4104;SRF=0;SRP=2930.16;SRR=1348;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:25,16:25:896:16:576:-39.8328,0,-68.6181	0/1:85:46,39:46:1633:39:1381:-98.9992,0,-121.669	1/1:100:0,100:0:0:100:3569:-321.417,-30.103,0	1/1:109:0,109:0:0:109:3897:-350.922,-32.8123,0	0/1:62:28,34:28:1000:34:1224:-91.8032,0,-71.6515	0/1:38:19,19:19:684:19:684:-50.4512,0,-50.4512	0/1:71:36,35:36:1277:35:1252:-91.6119,0,-93.858	1/1:110:0,110:0:0:110:3903:-351.461,-33.1133,0	0/1:48:21,27:21:756:27:960:-72.2668,0,-53.9178	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:48:0,48:0:0:48:1678:-151.303,-14.4494,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:60:23,37:23:828:37:1332:-102.121,0,-56.7823	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:78:0,78:0:0:78:2770:-249.537,-23.4803,0	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	0/1:51:19,32:19:676:32:1143:-87.8262,0,-45.8155	0/1:79:37,42:37:1316:42:1500:-111.513,0,-94.9604	0/1:97:45,52:45:1612:52:1853:-137.848,0,-116.17	0/1:31:21,10:21:756:10:356:-23.0493,0,-59.0353	1/1:50:0,50:0:0:50:1750:-157.78,-15.0515,0	1/1:43:3,40:3:108:40:1425:-118.47,-2.86912,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:136:0,136:0:0:136:4876:-438.992,-40.9401,0	1/1:134:0,134:0:0:134:4799:-432.066,-40.338,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:14:0,14:0:0:14:489:-44.3389,-4.21442,0	0/1:174:97,77:97:3492:77:2749:-195.271,0,-262.11	0/1:51:29,22:29:1040:22:777:-54.8978,0,-78.5618	0/1:51:32,19:32:1140:19:684:-46.5378,0,-87.5567	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:78:38,40:38:1356:40:1432:-105.697,0,-98.8601	0/1:43:19,24:19:671:24:860:-64.7775,0,-47.7715	1/1:106:0,106:0:0:106:3762:-338.779,-31.9092,0	1/1:78:1,77:1:36:77:2765:-245.493,-19.8821,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:39:0,39:0:0:39:1389:-125.307,-11.7402,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:101:55,46:55:1976:46:1614:-115.141,0,-147.711	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:60:36,24:36:1284:24:856:-59.2993,0,-97.8016	0/1:56:31,25:31:1089:25:896:-64.1027,0,-81.4596	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:79:0,79:0:0:79:2802:-252.418,-23.7814,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:63:0,63:0:0:63:2258:-203.483,-18.9649,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:78:51,27:51:1828:27:972:-64.3176,0,-141.321	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:58:41,17:41:1472:17:597:-36.5964,0,-115.316	1/1:26:0,26:0:0:26:913:-82.484,-7.82678,0	0/1:65:28,37:28:996:37:1316:-99.1749,0,-70.3879	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:24:7,17:7:252:17:612:-48.1887,0,-15.8042	0/1:50:31,19:31:1107:19:684:-46.8388,0,-84.8887	1/1:94:0,94:0:0:94:3364:-302.976,-28.2968,0	0/1:78:37,41:37:1328:41:1472:-109.296,0,-96.3419	0/1:55:27,28:27:972:28:996:-73.3982,0,-71.2413	0/1:47:16,31:16:576:31:1095:-84.7092,0,-38.0266	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:68:37,31:37:1332:31:1108:-79.561,0,-99.7123	0/1:92:43,49:43:1544:49:1756:-130.629,0,-111.558	0/1:118:65,53:65:2332:53:1864:-132.513,0,-174.618	0/1:97:62,35:62:2220:35:1245:-83.1528,0,-170.865	0/1:50:27,23:27:968:23:809:-58.0768,0,-72.3859	1/1:110:0,110:0:0:110:3948:-355.511,-33.1133,0	0/1:147:84,63:84:2961:63:2264:-159.77,0,-222.47	0/1:47:26,21:26:932:21:756:-54.2188,0,-70.0505	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:65:0,65:0:0:65:2317:-208.76,-19.567,0	0/1:29:13,16:13:464:16:557:-41.7257,0,-33.3676	0/1:62:21,41:21:748:41:1464:-113.392,0,-48.9814	0/1:69:46,23:46:1652:23:809:-52.3572,0,-128.197	1/1:57:2,55:2:72:55:1976:-171.272,-10.322,0	1/1:100:0,100:0:0:100:3542:-318.988,-30.103,0
chr01	33342395	.	TAGCA	CAGCT,TAGCT	115133	PASS	AB=0.464258,0.527195;ABP=31.5718,19.5452;AC=146,42;AF=0.776596,0.223404;AN=188;AO=4041,1364;CIGAR=1X3M1X,4M1X;DP=5448;DPB=5453.6;DPRA=0,1.14235;EPP=8777.93,2964.9;EPPR=20.3821;GTI=2;LEN=5,1;MEANALT=1.75532,2.19149;MQM=59.9871,59.9993;MQMR=60;NS=94;NUMALT=2;ODDS=1.9188;PAIRED=0,0;PAIREDR=0;PAO=14,11.5;PQA=500,412;PQR=0;PRO=0;QA=142948,48767;QR=287;RO=8;RPL=4041,1364;RPP=8777.93,2964.9;RPPR=20.3821;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8777.93,2964.9;SAR=4041,1364;SRF=0;SRP=20.3821;SRR=8;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,15,25:0:0:15,25:536,896:-117.137,-73.4346,-68.9192,-44.0597,0,-36.534	1/2:82:2,37,42:2:72:37,42:1309,1500:-222.413,-116.398,-111.135,-100.72,0,-93.9518	1/1:97:0,96,0:0:0:96,0:3361,0:-302.351,-28.8989,0,-302.351,-28.8989,-302.351	1/1:111:0,109,0:0:0:109,0:3819,0:-343.624,-32.8123,0,-343.624,-32.8123,-343.624	1/2:63:0,33,28:0:0:33,28:1180,1000:-177.715,-81.4988,-71.5648,-96.1865,0,-87.7577	1/2:37:1,18,18:1:36:18,18:641,644:-101.519,-49.5748,-47.0938,-49.3043,0,-46.8234	1/2:70:0,32,37:0:0:32,37:1112,1324:-198.365,-107.964,-98.3313,-90.3937,0,-79.2556	1/1:106:0,106,0:0:0:106,0:3743,0:-337.015,-31.9092,0,-337.015,-31.9092,-337.015	1/2:48:0,26,22:0:0:26,22:914,784:-138.658,-64.2613,-56.4345,-74.7503,0,-68.1276	1/1:47:0,47,0:0:0:47,0:1645,0:-148.334,-14.1484,0,-148.334,-14.1484,-148.334	1/1:47:0,46,0:0:0:46,0:1637,0:-147.259,-13.8474,0,-147.259,-13.8474,-147.259	1/1:57:0,57,0:0:0:57,0:2004,0:-180.634,-17.1587,0,-180.634,-17.1587,-180.634	1/1:60:0,60,0:0:0:60,0:2139,0:-192.779,-18.0618,0,-192.779,-18.0618,-192.779	1/2:61:0,37,24:0:0:37,24:1301,860:-176.396,-70.4971,-59.359,-106.254,0,-99.0296	1/1:83:0,83,0:0:0:83,0:2959,0:-266.545,-24.9855,0,-266.545,-24.9855,-266.545	1/1:36:0,36,0:0:0:36,0:1281,0:-115.418,-10.8371,0,-115.418,-10.8371,-115.418	1/1:79:0,76,0:0:0:76,0:2698,0:-242.716,-22.8783,0,-242.716,-22.8783,-242.716	1/1:52:0,52,0:0:0:52,0:1856,0:-167.32,-15.6536,0,-167.32,-15.6536,-167.32	1/2:51:0,32,19:0:0:32,19:1136,680:-148.31,-55.7526,-46.1196,-92.8574,0,-87.1378	1/2:79:0,42,37:0:0:42,37:1473,1332:-228.91,-109.044,-96.401,-120.221,0,-109.083	1/2:98:0,52,45:0:0:52,45:1815,1600:-277.937,-130.384,-114.731,-147.546,0,-133.999	1/2:31:0,10,21:0:0:10,21:357,756:-91.1497,-62.0456,-59.0353,-29.4619,0,-23.1403	1/1:50:0,49,0:0:0:49,0:1745,0:-156.985,-14.7505,0,-156.985,-14.7505,-156.985	1/1:42:0,39,3:0:0:39,3:1381,108:-124.23,-11.7402,0,-115.418,-2.56809,-114.514	1/1:57:0,56,0:0:0:56,0:1978,0:-177.936,-16.8577,0,-177.936,-16.8577,-177.936	1/1:136:0,136,0:0:0:136,0:4808,0:-432.881,-40.9401,0,-432.881,-40.9401,-432.881	1/1:133:0,132,1:0:0:132,1:4644,36:-417.771,-39.736,0,-414.834,-36.4387,-414.533	1/1:35:0,35,0:0:0:35,0:1238,0:-111.725,-10.5361,0,-111.725,-10.5361,-111.725	1/1:72:0,72,0:0:0:72,0:2576,0:-232.09,-21.6742,0,-232.09,-21.6742,-232.09	1/1:29:0,29,0:0:0:29,0:1022,0:-92.2352,-8.72987,0,-92.2352,-8.72987,-92.2352	1/1:56:0,54,0:0:0:54,0:1917,0:-172.448,-16.2556,0,-172.448,-16.2556,-172.448	1/1:5:0,5,0:0:0:5,0:179,0:-16.4604,-1.50515,0,-16.4604,-1.50515,-16.4604	1/2:24:0,13,11:0:0:13,11:467,392:-70.407,-32.3087,-28.3953,-38.4558,0,-35.1445	1/2:8:0,3,2:0:0:3,2:108,72:-14.6871,-5.87483,-4.97174,-8.81225,0,-8.21019	1/1:13:0,13,0:0:0:13,0:466,0:-42.2232,-3.91339,0,-42.2232,-3.91339,-42.2232	1/1:14:0,14,0:0:0:14,0:497,0:-45.0646,-4.21442,0,-45.0646,-4.21442,-45.0646	1/2:176:2,73,97:2:72:73,97:2607,3480:-489.926,-277.983,-261.882,-206.675,0,-183.35	1/2:53:0,22,31:0:0:22,31:781,1101:-153.702,-90.0664,-83.4438,-63.9908,0,-54.6589	1/2:52:0,19,33:0:0:19,33:674,1184:-151.787,-96.876,-91.1564,-55.211,0,-45.277	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:79:0,40,39:0:0:40,39:1434,1385:-230.167,-113.207,-101.165,-117.317,0,-105.577	1/2:43:0,24,19:0:0:24,19:860,680:-125.949,-55.8096,-48.5849,-70.4975,0,-64.7779	1/1:106:0,105,0:0:0:105,0:3653,0:-328.622,-31.6082,0,-328.622,-31.6082,-328.622	1/1:77:0,76,0:0:0:76,0:2702,0:-243.007,-22.8783,0,-243.007,-22.8783,-243.007	1/1:79:0,79,0:0:0:79,0:2819,0:-253.831,-23.7814,0,-253.831,-23.7814,-253.831	1/1:37:0,37,0:0:0:37,0:1298,0:-117.12,-11.1381,0,-117.12,-11.1381,-117.12	1/1:40:0,39,1:0:0:39,1:1381,36:-124.227,-11.7402,0,-121.29,-8.44293,-120.989	1/2:104:0,47,57:0:0:47,57:1657,2029:-300.577,-165.663,-151.514,-135.21,0,-118.051	1/1:33:0,33,0:0:0:33,0:1170,0:-105.608,-9.93399,0,-105.608,-9.93399,-105.608	1/2:59:0,25,34:0:0:25,34:890,1220:-172.35,-99.8134,-92.2876,-72.8362,0,-62.6011	1/2:57:0,25,32:0:0:25,32:886,1133:-164.823,-92.6437,-85.1179,-72.5331,0,-62.9001	1/1:8:0,7,0:0:0:7,0:245,0:-22.0319,-2.10721,0,-22.0319,-2.10721,-22.0319	1/1:79:0,78,0:0:0:78,0:2764,0:-248.694,-23.4803,0,-248.694,-23.4803,-248.694	1/1:18:0,18,0:0:0:18,0:642,0:-58.1103,-5.41854,0,-58.1103,-5.41854,-58.1103	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:68:0,68,0:0:0:68,0:2407,0:-216.887,-20.47,0,-216.887,-20.47,-216.887	1/1:28:0,28,0:0:0:28,0:997,0:-90.0452,-8.42884,0,-90.0452,-8.42884,-90.0452	1/1:1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chr01	33345350	.	C	T	37440.6	PASS	AB=0.553378;ABP=98.9829;AC=42;AF=0.223404;AN=188;AO=2160;CIGAR=1X;DP=8259;DPB=8259;DPRA=1.18231;EPP=4693.39;EPPR=13192.6;GTI=4;LEN=1;MEANALT=1.07843;MQM=59.5407;MQMR=59.9861;NS=94;NUMALT=1;ODDS=1.91817;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77328;QR=218103;RO=6094;RPL=0;RPP=4693.39;RPPR=13192.6;RPR=2160;RUN=1;SAF=2160;SAP=4693.39;SAR=0;SRF=6094;SRP=13236;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:93:53,40:53:1908:40:1418:-99.8378,0,-144.002	0/1:64:32,32:32:1152:32:1137:-83.3098,0,-84.7242	0/0:93:92,1:92:3300:1:36:0,-24.3975,-293.62	0/0:127:125,2:125:4476:2:72:0,-31.3941,-396.173	0/1:51:22,29:22:784:29:1044:-78.9168,0,-55.5314	0/1:37:21,16:21:756:16:561:-39.6786,0,-57.2291	0/1:67:27,40:27:963:40:1431:-108.915,0,-66.8169	0/0:127:125,2:125:4453:2:68:0,-31.7731,-394.413	0/1:146:64,81:64:2292:81:2908:-217.917,0,-162.532	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:137:136,0:136:4845:0:0:0,-40.9401,-435.845	0/0:108:108,0:108:3859:0:0:0,-32.5112,-347.505	0/1:84:35,49:35:1247:49:1760:-133.388,0,-87.2475	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:22:21,1:21:756:1:36:0,-3.02438,-64.7689	0/1:28:14,14:14:500:14:504:-37.261,0,-36.9073	0/1:167:61,106:61:2176:106:3787:-290.743,0,-145.835	0/1:188:92,96:92:3296:96:3429:-252.062,0,-240.265	0/1:81:26,55:26:921:55:1960:-151.742,0,-58.8218	0/0:93:93,0:93:3313:0:0:0,-27.9958,-298.388	0/1:88:78,10:78:2788:10:360:-6.25366,0,-224.67	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.864	0/0:203:203,0:203:7272:0:0:0,-61.1091,-654.531	0/0:218:218,0:218:7798:0:0:0,-65.6245,-701.847	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.641	0/0:166:165,1:165:5907:1:36:0,-46.3727,-528.14	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:5,6:5:180:6:216:-16.4745,0,-13.2407	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:222:97,125:97:3480:125:4479:-336.446,0,-246.582	0/1:74:29,45:29:1032:45:1612:-123.08,0,-70.9173	0/1:41:30,11:30:1068:11:396:-23.6323,0,-84.0898	0/1:5:1,4:1:36:4:137:-11.0679,0,-2.09312	0/1:138:62,76:62:2220:76:2698:-201.008,0,-158.522	0/1:32:15,17:15:540:17:612:-45.7759,0,-39.3036	0/0:189:188,1:188:6708:1:36:0,-53.2964,-600.2	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:124:124,0:124:4436:0:0:0,-37.3277,-399.412	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/1:180:62,118:62:2228:118:4229:-326.464,0,-146.598	0/0:90:90,0:90:3207:0:0:0,-27.0927,-288.853	0/1:96:34,62:34:1215:62:2228:-171.88,0,-80.7449	0/1:107:49,58:49:1745:58:2076:-154.898,0,-125.122	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.726	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7439	0/0:170:170,0:170:6092:0:0:0,-51.1751,-548.381	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:24:10,14:10:345:14:485:-36.7513,0,-24.1561	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:149:149,0:149:5324:0:0:0,-44.8535,-479.294	0/1:131:45,86:45:1608:86:3092:-238.422,0,-105.574	0/0:71:67,4:67:2396:4:144:0,-8.05951,-202.584	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/1:150:44,106:44:1576:106:3789:-296.052,0,-96.9771	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.478	0/1:81:36,45:36:1288:45:1612:-120.97,0,-91.8402	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:114:68,46:68:2428:46:1652:-114.644,0,-184.459	0/1:113:41,72:41:1472:72:2584:-198.781,0,-98.7597	0/0:194:194,0:194:6952:0:0:0,-58.3998,-625.744	0/1:160:78,82:78:2780:82:2948:-217.374,0,-202.277	0/1:45:15,29:15:540:29:1044:-80.7926,0,-35.4719	0/1:83:26,57:26:936:57:2034:-157.765,0,-59.574	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:132:67,65:67:2392:65:2332:-170.341,0,-175.802	0/1:73:20,53:20:720:53:1904:-149.453,0,-43.1536	0/1:214:100,114:100:3572:114:4092:-304.029,0,-257.268	0/1:78:42,35:42:1508:35:1243:-88.6188,0,-112.475	0/1:84:38,46:38:1364:46:1656:-124.035,0,-97.7742	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:152:82,70:82:2939:70:2501:-179.425,0,-218.987	0/1:33:16,17:16:572:17:608:-45.1009,0,-41.8794	0/0:75:73,1:73:2620:1:36:0,-19.0378,-232.449	0/0:73:72,1:72:2567:1:36:0,-18.3769,-227.681	0/1:29:14,15:14:504:15:540:-40.202,0,-36.9682	0/1:98:44,54:44:1571:54:1934:-143.945,0,-112.18	0/1:79:33,46:33:1184:46:1652:-125.182,0,-83.0869	0/0:84:84,0:84:2993:0:0:0,-25.2865,-269.601	0/0:177:177,0:177:6344:0:0:0,-53.2823,-571.05
chr01	33345465	.	CG	TG	31428.3	PASS	AB=0.511695;ABP=13.6766;AC=43;AF=0.228723;AN=188;AO=4619;CIGAR=1X1M;DP=22822;DPB=22822.5;DPRA=2.61813;EPP=9955.02;EPPR=38788.2;GTI=2;LEN=1;MEANALT=1.55556;MQM=27.7751;MQMR=30.1464;NS=94;NUMALT=1;ODDS=2.20296;PAIRED=0;PAIREDR=0;PAO=1;PQA=36;PQR=0;PRO=0;QA=125345;QR=639520;RO=18160;RPL=4610;RPP=9955.02;RPPR=38788.2;RPR=9;RUN=1;SAF=4619;SAP=10033;SAR=0;SRF=18158;SRP=39419.6;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:20,16:20:705:16:441:-25.0407,0,-41.6729	0/1:62:36,26:36:1226:26:711:-38.8057,0,-74.3943	0/0:114:114,0:114:4013:0:0:0,-34.3174,-299.369	0/0:181:181,0:181:6355:0:0:0,-54.4864,-464.504	0/1:57:31,26:31:1093:26:700:-39.0467,0,-63.2819	0/1:10:2,8:2:70:8:216:-14.5053,0,-2.59891	0/1:90:61,29:61:2159:29:779:-35.4108,0,-130.02	0/0:90:90,0:90:3170:0:0:0,-27.0927,-236.713	0/1:93:52,41:52:1856:41:1100:-60.4217,0,-110.171	0/0:58:58,0:58:2019:0:0:0,-17.4597,-149.09	0/0:402:402,0:402:14138:0:0:0,-121.014,-1034.15	0/0:99:99,0:99:3463:0:0:0,-29.802,-258.551	0/0:73:73,0:73:2560:0:0:0,-21.9752,-190.697	0/1:45:20,25:20:709:25:693:-43.1187,0,-38.59	0/0:61:61,0:61:2141:0:0:0,-18.3628,-156.884	0/0:92:92,0:92:3205:0:0:0,-27.6948,-235.856	0/0:32:32,0:32:1114:0:0:0,-9.63296,-83.8523	0/0:24:24,0:24:846:0:0:0,-7.22472,-63.8868	0/1:164:82,81:82:2870:81:2204:-126.941,0,-165.514	0/1:131:66,65:66:2332:65:1760:-101.891,0,-131.621	0/1:111:51,60:51:1771:60:1620:-96.3935,0,-95.0246	0/1:133:49,84:49:1745:84:2298:-144.944,0,-78.3054	0/0:150:150,0:150:5224:0:0:0,-45.1545,-382.046	0/1:26:22,4:22:781:4:108:-1.05101,0,-49.5752	0/0:105:105,0:105:3739:0:0:0,-31.6081,-273.046	0/0:230:228,0:228:8023:0:0:0,-68.6348,-582.984	0/0:201:201,0:201:7111:0:0:0,-60.507,-518.46	0/0:23:23,0:23:790:0:0:0,-6.92369,-58.5826	0/0:170:168,0:168:5926:0:0:0,-50.573,-430.915	0/0:125:123,2:123:4340:2:48:0,-33.639,-313.24	0/0:42:42,0:42:1508:0:0:0,-12.6433,-109.854	0/0:909:904,1:904:32083:1:29:0,-270.097,-2333.65	0/1:807:438,369:438:15413:369:10039:-563.466,0,-878.703	0/1:949:428,520:428:15124:520:14128:-848.744,0,-842.699	0/0:2183:2175,5:2175:76364:5:141:0,-644.921,-5692.69	0/0:1469:1464,3:1464:51636:3:83:0,-434.967,-3851.74	0/1:142:72,70:72:2535:70:1886:-108.75,0,-143.015	0/1:111:69,41:69:2433:41:1104:-55.4606,0,-145.171	0/1:313:140,172:140:4912:172:4690:-283.155,0,-271.998	0/1:719:359,357:359:12625:357:9735:-566.09,0,-703.166	0/1:78:46,32:46:1589:32:878:-47.6671,0,-93.9948	0/1:195:98,96:98:3446:96:2603:-151,0,-194.879	0/0:110:110,0:110:3884:0:0:0,-33.1133,-282.892	0/0:36:36,0:36:1274:0:0:0,-10.8371,-93.3863	0/0:54:54,0:54:1901:0:0:0,-16.2556,-136.717	0/0:107:107,0:107:3738:0:0:0,-32.2102,-271.848	0/0:120:120,0:120:4200:0:0:0,-36.1236,-316.6	0/1:112:63,49:63:2203:49:1324:-72.6995,0,-126.638	0/0:108:108,0:108:3766:0:0:0,-32.5112,-277.294	0/1:109:54,54:54:1931:54:1443:-82.9797,0,-107.289	0/1:36:16,20:16:568:20:538:-32.4114,0,-29.6566	0/0:1170:1169,0:1169:41280:0:0:0,-351.904,-3006	0/0:118:117,1:117:4124:1:27:0,-33.1221,-305.501	0/0:60:59,0:59:2090:0:0:0,-17.7608,-150.959	0/0:778:773,4:773:27185:4:114:0,-224.727,-2026.82	0/0:112:112,0:112:3951:0:0:0,-33.7154,-287.006	0/0:52:52,0:52:1807:0:0:0,-15.6536,-132.779	0/0:934:930,2:930:32787:2:55:0,-276.167,-2376.29	0/1:661:321,340:321:11328:340:9226:-540.995,0,-622.849	0/0:48:48,0:48:1696:0:0:0,-14.4494,-123.57	0/0:98:98,0:98:3404:0:0:0,-29.5009,-252.001	0/1:717:333,384:333:11792:384:10358:-614.358,0,-642.337	0/0:88:88,0:88:3124:0:0:0,-26.4906,-224.174	0/1:203:93,109:93:3309:109:2991:-178.54,0,-178.701	0/0:50:50,0:50:1758:0:0:0,-15.0515,-129.461	0/0:82:82,0:82:2897:0:0:0,-24.6845,-210.133	0/0:158:158,0:158:5569:0:0:0,-47.5627,-402.88	0/1:186:45,140:45:1592:140:3801:-248.85,0,-56.1612	0/0:444:443,1:443:15560:1:27:0,-131.258,-1136.28	0/1:29:20,9:20:701:9:252:-12.0375,0,-44.1732	0/0:34:33,1:33:1146:1:28:0,-7.73571,-81.153	0/0:826:821,3:821:28956:3:81:0,-241.589,-2097.35	0/1:95:37,58:37:1275:58:1561:-96.4409,0,-66.943	0/1:62:35,27:35:1206:27:727:-39.701,0,-72.5402	0/0:152:152,0:152:5362:0:0:0,-45.7566,-392.011	0/1:131:67,64:67:2383:64:1728:-99.2814,0,-134.039	0/1:168:67,101:67:2399:101:2734:-168.944,0,-128.174	0/1:81:50,27:50:1744:27:746:-37.1878,0,-108.381	0/0:991:986,2:986:34763:2:56:0,-292.929,-2589.2	0/1:91:54,37:54:1916:37:999:-52.7463,0,-113.048	0/1:58:24,34:24:840:34:920:-56.8367,0,-46.0121	0/1:154:61,92:61:2125:92:2513:-156.533,0,-109.372	0/1:43:28,15:28:981:15:404:-19.5971,0,-59.5655	0/1:74:34,40:34:1194:40:1063:-62.8101,0,-65.671	0/0:34:34,0:34:1189:0:0:0,-10.235,-85.9485	0/1:107:57,50:57:1992:50:1375:-79.0669,0,-110.041	0/1:23:7,16:7:241:16:432:-27.8677,0,-11.4789	0/0:69:68,0:68:2284:0:0:0,-20.47,-173.826	0/0:83:82,0:82:2886:0:0:0,-24.6845,-215.257	0/1:476:223,253:223:7865:253:6844:-405.561,0,-429.988	0/1:1014:511,501:511:17981:501:13588:-784.334,0,-1008.44	0/1:76:24,52:24:860:52:1396:-88.9336,0,-40.0246	0/0:5:5,0:5:169:0:0:0,-1.50515,-12.9444	0/0:90:90,0:90:3182:0:0:0,-27.0927,-231.156
chr01	33404653	.	C	A	149231	PASS	AB=0.483107;ABP=13.5752;AC=145;AF=0.771277;AN=188;AO=7025;CIGAR=1X;DP=9249;DPB=9249;DPRA=14.1966;EPP=15257.6;EPPR=4821.51;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.2568;MQMR=59.8175;NS=94;NUMALT=1;ODDS=0.347106;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251625;QR=79294;RO=2219;RPL=7025;RPP=15257.6;RPPR=4821.51;RPR=0;RUN=1;SAF=0;SAP=15257.6;SAR=7025;SRF=0;SRP=4821.51;SRR=2219;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:27,27:27:953:27:968:-71.111,0,-69.8277	0/1:139:70,69:70:2497:69:2484:-181.911,0,-183.132	1/1:117:0,117:0:0:117:4200:-378.02,-35.2205,0	1/1:141:2,138:2:72:138:4946:-438.164,-35.5674,0	0/1:71:31,40:31:1112:40:1421:-106.794,0,-79.0182	0/1:97:50,47:50:1796:47:1688:-122.796,0,-132.691	0/1:149:61,88:61:2188:88:3148:-238.591,0,-152.332	1/1:132:0,132:0:0:132:4733:-425.761,-39.736,0	0/1:115:49,66:49:1760:66:2372:-178.995,0,-124.026	1/1:131:0,131:0:0:131:4669:-418.806,-39.4349,0	1/1:93:0,93:0:0:93:3315:-297.912,-27.9958,0	1/1:96:0,96:0:0:96:3431:-308.865,-28.8989,0	1/1:145:0,145:0:0:145:5204:-467.976,-43.6494,0	0/1:79:37,42:37:1332:42:1504:-111.476,0,-96.401	1/1:62:0,62:0:0:62:2232:-200.896,-18.6639,0	1/1:89:0,89:0:0:89:3200:-288.158,-26.7917,0	1/1:66:0,66:0:0:66:2367:-213.231,-19.868,0	1/1:63:0,63:0:0:63:2256:-203.238,-18.9649,0	0/1:61:34,27:34:1224:27:972:-69.4174,0,-92.1042	0/1:124:54,70:54:1936:70:2508:-188.603,0,-137.144	0/1:140:80,60:80:2859:60:2152:-151.715,0,-215.234	0/1:71:49,22:49:1752:22:792:-50.2195,0,-136.591	1/1:86:0,86:0:0:86:3080:-277.393,-25.8886,0	1/1:151:7,144:7:252:144:5165:-441.25,-22.4266,0	1/1:126:0,126:0:0:126:4517:-405.633,-37.9298,0	1/1:237:0,237:0:0:237:8508:-765.56,-71.3441,0	1/1:239:0,239:0:0:239:8540:-767.463,-71.9462,0	1/1:38:1,37:1:36:37:1332:-116.564,-7.84087,0	1/1:223:0,223:0:0:223:7963:-715.859,-67.1297,0	1/1:183:0,183:0:0:183:6565:-589.816,-55.0885,0	1/1:93:0,93:0:0:93:3325:-299.429,-27.9958,0	1/1:33:0,33:0:0:33:1188:-107.142,-9.93399,0	0/1:28:13,15:13:449:15:540:-40.49,0,-32.3086	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:26:0,26:0:0:26:932:-84.1927,-7.82678,0	0/1:239:124,115:124:4440:115:4111:-297.707,0,-327.824	0/1:161:75,85:75:2696:85:3032:-223.947,0,-194.507	0/1:93:42,51:42:1504:51:1832:-137.152,0,-106.802	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:82:47,35:47:1679:35:1256:-88.3919,0,-126.712	0/1:60:34,25:34:1224:25:889:-62.1239,0,-92.3464	1/1:143:0,143:0:0:143:5116:-460.102,-43.0473,0	1/1:85:0,85:0:0:85:3042:-273.992,-25.5876,0	1/1:57:0,57:0:0:57:2016:-181.304,-17.1587,0	1/1:135:0,135:0:0:135:4826:-434.429,-40.6391,0	1/1:95:2,93:2:72:93:3344:-294.129,-21.7611,0	0/1:187:104,83:104:3678:83:2947:-209.126,0,-274.925	1/1:148:0,148:0:0:148:5271:-474.219,-44.5524,0	0/1:142:62,80:62:2213:80:2868:-215.589,0,-156.65	0/1:132:63,69:63:2252:69:2480:-183.646,0,-163.207	1/1:12:0,12:0:0:12:432:-39.2119,-3.61236,0	1/1:117:0,117:0:0:117:4200:-377.939,-35.2205,0	1/1:57:0,57:0:0:57:2048:-184.53,-17.1587,0	1/1:14:0,14:0:0:14:504:-45.6957,-4.21442,0	1/1:114:0,114:0:0:114:4092:-368.26,-34.3174,0	1/1:90:0,90:0:0:90:3232:-291.048,-27.0927,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:27:16,11:16:568:11:388:-27.1277,0,-43.2175	1/1:79:0,79:0:0:79:2828:-254.751,-23.7814,0	1/1:111:0,110:0:0:110:3944:-354.503,-33.1133,0	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	1/1:181:0,181:0:0:181:6477:-582.971,-54.4864,0	0/1:202:106,96:106:3773:96:3437:-248.572,0,-278.957	1/1:61:0,61:0:0:61:2188:-196.799,-18.3628,0	1/1:58:0,58:0:0:58:2080:-187.436,-17.4597,0	1/1:100:0,100:0:0:100:3592:-323.2,-30.103,0	0/1:131:90,41:90:3228:41:1476:-93.68,0,-251.307	1/1:43:0,43:0:0:43:1533:-138.079,-12.9443,0	0/1:90:52,38:52:1828:38:1360:-95.5988,0,-137.699	1/1:83:0,83:0:0:83:2984:-268.623,-24.9855,0	1/1:23:0,23:0:0:23:824:-74.4599,-6.92369,0	0/1:132:61,70:61:2161:70:2516:-186.744,0,-154.89	0/1:109:60,49:60:2145:49:1742:-124.213,0,-160.417	1/1:146:0,146:0:0:146:5232:-470.453,-43.9504,0	0/1:93:55,38:55:1957:38:1360:-94.7048,0,-148.397	0/1:77:43,34:43:1536:34:1224:-87.157,0,-115.325	0/1:106:51,55:51:1828:55:1980:-146.291,0,-132.887	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:111:49,62:49:1741:62:2209:-165.508,0,-123.522	0/1:61:35,26:35:1256:26:932:-65.8342,0,-94.9743	0/1:206:110,96:110:3952:96:3444:-247.641,0,-293.853	0/1:119:67,52:67:2404:52:1863:-132.119,0,-180.787	0/1:65:33,32:33:1184:32:1139:-83.2229,0,-87.2907	1/1:67:0,67:0:0:67:2408:-216.736,-20.169,0	0/1:157:79,78:79:2817:78:2775:-202.664,0,-205.88	0/1:59:26,33:26:921:33:1188:-89.4394,0,-65.4444	1/1:104:0,104:0:0:104:3732:-335.915,-31.3071,0	1/1:74:0,74:0:0:74:2664:-239.895,-22.2762,0	0/1:62:31,31:31:1116:31:1112:-81.708,0,-82.0869	0/1:155:78,77:78:2800:77:2764:-202.122,0,-205.544	0/1:70:49,21:49:1747:21:743:-46.0627,0,-136.441	1/1:69:0,69:0:0:69:2480:-223.415,-20.7711,0	1/1:118:0,118:0:0:118:4208:-378.839,-35.5215,0
chr01	33527312	.	A	G	169396	PASS	AB=0.491716;ABP=5.81643;AC=146;AF=0.776596;AN=188;AO=8015;CIGAR=1X;DP=10446;DPB=10446;DPRA=0;EPP=17407.4;EPPR=5257.97;GTI=0;LEN=1;MEANALT=1.10638;MQM=59.9703;MQMR=59.9636;NS=94;NUMALT=1;ODDS=2.1285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=285715;QR=86549;RO=2420;RPL=8015;RPP=17407.4;RPPR=5257.97;RPR=0;RUN=1;SAF=8015;SAP=17407.4;SAR=0;SRF=2420;SRP=5257.97;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:17,13:17:608:13:453:-32.0687,0,-46.0211	0/1:133:83,50:83:2950:50:1776:-120.082,0,-225.694	1/1:109:0,109:0:0:109:3880:-349.394,-32.8123,0	1/1:149:0,149:0:0:149:5329:-479.741,-44.8535,0	0/1:71:30,41:30:1072:41:1476:-111.763,0,-75.4193	0/1:47:16,31:16:576:31:1112:-86.2429,0,-38.0266	0/1:124:80,44:80:2872:44:1584:-105.522,0,-221.389	1/1:139:0,139:0:0:139:4947:-445.378,-41.8432,0	0/1:92:61,31:61:2169:31:1112:-72.6966,0,-167.78	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:121:0,121:0:0:121:4289:-386.188,-36.4246,0	1/1:127:1,126:1:36:126:4484:-399.112,-34.6325,0	1/1:143:0,143:0:0:143:5076:-456.982,-43.0473,0	0/1:166:73,93:73:2628:93:3311:-248.238,0,-186.796	1/1:123:0,123:0:0:123:4401:-396.261,-37.0267,0	1/1:100:2,98:2:72:98:3474:-306.035,-23.2663,0	1/1:142:0,142:0:0:142:5076:-456.982,-42.7463,0	1/1:120:0,120:0:0:120:4287:-386.007,-36.1236,0	0/1:47:14,33:14:504:33:1176:-91.9994,0,-31.5497	0/1:142:66,75:66:2361:75:2677:-198.367,0,-169.938	0/1:127:77,50:77:2760:50:1792:-123.332,0,-210.411	0/1:64:52,12:52:1872:12:421:-18.9384,0,-149.493	1/1:116:1,114:1:36:114:4081:-363.868,-31.38,0	1/1:143:5,138:5:180:138:4945:-428.647,-26.4952,0	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	1/1:343:1,342:1:36:342:12181:-1092.52,-99.655,0	1/1:186:1,184:1:36:184:6571:-587.86,-52.4521,0	1/1:54:0,54:0:0:54:1913:-172.445,-16.2556,0	1/1:179:0,179:0:0:179:6376:-573.928,-53.8844,0	1/1:199:0,199:0:0:199:7092:-638.34,-59.905,0	1/1:193:1,190:1:36:190:6784:-607.031,-54.2583,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:9:0,9:0:0:9:315:-28.6879,-2.70927,0	0/1:284:145,139:145:5185:139:4984:-363.198,0,-381.296	0/1:206:108,98:108:3846:98:3478:-251.212,0,-284.132	0/1:80:29,51:29:1040:51:1821:-140.087,0,-69.832	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:107:55,52:55:1976:52:1859:-135.379,0,-145.904	0/1:60:26,34:26:936:34:1220:-92.045,0,-66.4977	1/1:110:1,109:1:36:109:3904:-347.952,-29.515,0	1/1:124:0,123:0:0:123:4343:-390.678,-37.0267,0	1/1:77:1,76:1:36:76:2736:-242.884,-19.581,0	1/1:116:0,114:0:0:114:4054:-364.76,-34.3174,0	1/1:123:0,123:0:0:123:4368:-393.292,-37.0267,0	0/1:163:69,94:69:2476:94:3351:-252.738,0,-174.015	1/1:93:1,91:1:36:91:3229:-287.231,-24.4563,0	0/1:150:76,74:76:2732:74:2644:-193.052,0,-200.968	0/1:171:87,84:87:3113:84:2997:-218.484,0,-228.919	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:122:65,57:65:2321:57:2033:-146.515,0,-172.423	1/1:92:1,90:1:36:90:3225:-286.872,-24.1553,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:119:0,119:0:0:119:4245:-382.229,-35.8226,0	1/1:62:0,62:0:0:62:2194:-197.709,-18.6639,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:25:7,18:7:252:18:644:-50.7648,0,-15.5032	1/1:96:0,96:0:0:96:3425:-308.463,-28.8989,0	1/1:176:0,176:0:0:176:6284:-565.653,-52.9813,0	0/1:12:7,5:7:248:5:171:-12.1131,0,-19.0518	1/1:171:1,170:1:36:170:6073:-543.066,-47.8779,0	0/1:265:153,112:153:5460:112:3995:-279.966,0,-411.755	1/1:86:1,85:1:36:85:3048:-270.951,-22.2903,0	1/1:55:1,54:1:36:54:1936:-170.918,-12.9584,0	1/1:187:3,184:3:93:184:6490:-575.502,-47.6159,0	0/1:92:56,36:56:1982:36:1292:-88.8875,0,-150.956	1/1:74:3,71:3:108:71:2548:-219.506,-12.2121,0	0/1:89:34,55:34:1186:55:1942:-148.261,0,-80.2491	1/1:170:1,169:1:36:169:6007:-537.138,-47.5768,0	1/1:23:1,22:1:36:22:777:-66.9042,-3.57754,0	0/1:126:53,73:53:1908:73:2616:-197.758,0,-134.068	0/1:68:42,26:42:1512:26:917:-62.3754,0,-115.905	1/1:334:0,334:0:0:334:11908:-1071.57,-100.544,0	0/1:122:67,55:67:2389:55:1937:-137.876,0,-178.54	0/1:154:70,84:70:2516:84:3000:-223.872,0,-180.333	0/1:80:47,33:47:1665:33:1188:-83.1462,0,-126.053	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:85:48,37:48:1720:37:1328:-94.2347,0,-129.498	0/1:110:58,52:58:2084:52:1841:-132.855,0,-154.717	0/1:188:110,78:110:3948:78:2781:-193.936,0,-298.917	0/1:139:55,84:55:1976:84:2987:-227.22,0,-136.271	0/1:112:47,65:47:1676:65:2320:-175.345,0,-117.412	1/1:145:1,144:1:36:144:5121:-457.425,-40.0511,0	0/1:230:101,129:101:3617:129:4580:-343.129,0,-256.497	0/1:54:29,25:29:1044:25:896:-64.6966,0,-78.0192	1/1:106:1,105:1:36:105:3746:-333.741,-28.3109,0	1/1:108:0,108:0:0:108:3860:-347.59,-32.5112,0	0/1:99:42,57:42:1492:57:2040:-154.07,0,-104.773	0/1:156:56,99:56:2008:99:3540:-271.938,0,-134.121	0/1:108:77,31:77:2732:31:1093:-66.1664,0,-213.541	1/1:87:0,87:0:0:87:3094:-278.685,-26.1896,0	1/1:150:0,150:0:0:150:5343:-481,-45.1545,0
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chr01	33533784	.	G	A	315042	PASS	AB=0.657678;ABP=1604.73;AC=145;AF=0.771277;AN=188;AO=16019;CIGAR=1X;DP=18575;DPB=18575;DPRA=0;EPP=34787.8;EPPR=5551.12;GTI=5;LEN=1;MEANALT=1.01064;MQM=38.4693;MQMR=44.6571;NS=94;NUMALT=1;ODDS=6.64005;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=571924;QR=91109;RO=2555;RPL=8042;RPP=3.58302;RPPR=5490.49;RPR=7977;RUN=1;SAF=8042;SAP=3.58302;SAR=7977;SRF=2548;SRP=5490.49;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:92:29,63:29:1029:63:2231:-132.634,0,-63.8501	0/1:214:68,146:68:2423:146:5218:-259.864,0,-150.438	1/1:184:0,184:0:0:184:6584:-444.59,-55.3895,0	1/1:378:0,378:0:0:378:13473:-853.141,-113.789,0	0/1:89:34,55:34:1208:55:1967:-87.9049,0,-79.9658	0/1:75:18,57:18:648:57:2040:-130.029,0,-35.0343	0/1:188:64,124:64:2292:124:4439:-255.568,0,-146.764	1/1:344:0,344:0:0:344:12204:-807.23,-103.554,0	0/1:208:61,147:61:2171:147:5235:-286.778,0,-130.594	1/1:260:0,260:0:0:260:9316:-611.101,-78.2678,0	1/1:171:0,171:0:0:171:6115:-434.582,-51.4761,0	1/1:256:1,255:1:27:255:9088:-684.334,-74.4828,0	1/1:224:0,224:0:0:224:7975:-599.508,-67.4307,0	0/1:167:63,104:63:2260:104:3735:-225.804,0,-148.19	1/1:243:3,240:3:108:240:8562:-592.023,-63.8797,0	1/1:223:0,223:0:0:223:7916:-557.142,-67.1297,0	1/1:152:0,151:0:0:151:5369:-356.313,-45.4555,0	1/1:211:0,211:0:0:211:7512:-534.223,-63.5173,0	0/1:86:26,60:26:924:60:2148:-136.999,0,-56.1741	0/1:430:205,225:205:7311:225:8041:-433.555,0,-515.937	0/1:335:101,234:101:3600:234:8362:-437.217,0,-216.107	0/1:161:78,83:78:2779:83:2968:-156.544,0,-196.029	1/1:228:0,228:0:0:228:8135:-583.931,-68.6348,0	1/1:234:5,229:5:180:229:8196:-458.092,-54.5723,0	1/1:161:0,161:0:0:161:5771:-399.997,-48.4658,0	1/1:616:1,615:1:36:615:21926:-1354.9,-182.698,0	1/1:599:0,599:0:0:599:21441:-1526.48,-180.317,0	1/1:110:0,110:0:0:110:3902:-285.441,-33.1133,0	1/1:484:1,483:1:36:483:17238:-1148.82,-142.15,0	1/1:307:0,307:0:0:307:10964:-652.604,-92.4162,0	1/1:216:0,216:0:0:216:7728:-516.954,-65.0225,0	1/1:21:0,21:0:0:21:756:-58.5687,-6.32163,0	0/1:33:15,18:15:540:18:648:-34.0072,0,-37.8871	0/1:9:6,3:6:212:3:108:-4.89396,0,-16.1201	1/1:6:0,6:0:0:6:212:-17.9499,-1.80618,0	1/1:24:0,24:0:0:24:856:-71.5421,-7.22472,0	0/1:393:118,275:118:4199:275:9751:-569.24,0,-252.36	0/1:188:41,147:41:1472:147:5253:-265.823,0,-73.2725	0/1:113:33,80:33:1184:80:2842:-159.923,0,-71.7777	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.0223	0/1:227:77,150:77:2755:150:5363:-308.547,0,-174.201	0/1:92:23,69:23:820:69:2468:-154.913,0,-44.5965	1/1:346:0,346:0:0:346:12343:-826.091,-104.156,0	1/1:240:0,240:0:0:240:8584:-538.866,-72.2472,0	1/1:162:0,162:0:0:162:5774:-396.866,-48.7669,0	1/1:226:0,226:0:0:226:8057:-499.008,-68.0328,0	1/1:169:0,169:0:0:169:6036:-382.522,-50.8741,0	0/1:294:101,193:101:3572:193:6911:-369.157,0,-227.69	1/1:193:1,192:1:36:192:6872:-472.437,-54.5503,0	0/1:192:38,154:38:1356:154:5490:-317.529,0,-62.6627	0/1:240:68,172:68:2428:172:6159:-310.454,0,-140.72	1/1:22:0,22:0:0:22:788:-50.236,-6.62266,0	0/1:197:64,133:64:2291:133:4714:-289.128,0,-144.593	1/1:147:0,147:0:0:147:5280:-441.926,-44.2514,0	1/1:19:0,19:0:0:19:684:-45.8666,-5.71957,0	1/1:299:0,299:0:0:299:10690:-773.662,-90.008,0	1/1:137:0,137:0:0:137:4909:-300.541,-41.2411,0	1/1:11:0,11:0:0:11:396:-27.3239,-3.31133,0	0/1:18:3,15:3:108:15:536:-29.2875,0,-4.4826	1/1:193:0,193:0:0:193:6887:-491.502,-58.0988,0	1/1:252:0,252:0:0:252:8969:-640.721,-75.8596,0	0/1:13:4,9:4:144:9:324:-23.8997,0,-9.21612	1/1:411:0,411:0:0:411:14690:-1000.78,-123.723,0	0/1:264:58,206:58:2062:206:7383:-401.663,0,-103.803	1/1:220:0,220:0:0:220:7863:-482.308,-66.2266,0	1/1:170:0,170:0:0:170:6104:-434.357,-51.1751,0	1/1:379:0,379:0:0:379:13562:-912.502,-114.09,0	0/1:219:119,100:119:4268:100:3592:-187.685,0,-311.626	1/1:107:0,107:0:0:107:3795:-303.828,-32.2102,0	0/1:85:25,60:25:896:60:2148:-110.639,0,-54.4977	1/1:183:0,183:0:0:183:6513:-410.854,-55.0885,0	1/1:56:0,56:0:0:56:2004:-128.396,-16.8577,0	0/1:177:44,133:44:1568:133:4708:-270.948,0,-86.2543	0/1:106:43,63:43:1531:63:2237:-138.138,0,-103.173	1/1:325:0,325:0:0:325:11596:-791.165,-97.8348,0	0/1:255:107,148:107:3819:148:5274:-258.977,0,-260.583	0/1:181:89,92:89:3187:92:3292:-191.769,0,-229.484	0/1:231:75,156:75:2660:156:5578:-308.021,0,-167.252	1/1:34:0,34:0:0:34:1220:-79.8371,-10.235,0	0/1:173:71,102:71:2537:102:3637:-202.622,0,-172.06	0/1:200:69,131:69:2445:131:4677:-236.324,0,-156.938	0/1:403:146,257:146:5159:257:9209:-533.062,0,-334.112	0/1:116:32,84:32:1144:84:3007:-169.764,0,-66.0201	0/1:140:50,90:50:1792:90:3228:-179.834,0,-115.708	1/1:276:1,275:1:36:275:9805:-614.516,-79.486,0	0/1:276:58,218:58:2063:218:7765:-448.197,0,-98.4614	0/1:56:13,43:13:459:43:1532:-81.7317,0,-23.9549	1/1:183:1,182:1:36:182:6473:-438.403,-52.034,0	1/1:194:2,192:2:72:192:6850:-485.26,-52.5962,0	0/1:117:42,75:42:1491:75:2675:-162.355,0,-95.4799	0/1:191:77,114:77:2759:114:4068:-247.965,0,-187.008	0/1:166:79,87:79:2832:87:3099:-173.685,0,-199.651	1/1:274:0,274:0:0:274:9832:-688.048,-82.4822,0	1/1:278:0,278:0:0:278:9941:-672.302,-83.6863,0
chr01	33589038	.	T	C	148366	PASS	AB=0.47465;ABP=27.3409;AC=140;AF=0.752688;AN=186;AO=7023;CIGAR=1X;DP=9329;DPB=9329;DPRA=34.1502;EPP=15253.3;EPPR=5006.08;GTI=0;LEN=1;MEANALT=1.02198;MQM=59.9655;MQMR=34.5564;NS=93;NUMALT=1;ODDS=4.97602;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250764;QR=82462;RO=2304;RPL=7023;RPP=15253.3;RPPR=5006.08;RPR=0;RUN=1;SAF=0;SAP=15253.3;SAR=7023;SRF=0;SRP=5006.08;SRR=2304;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:79:34,45:34:1216:45:1616:-121.949,0,-71.035	0/1:82:30,52:30:1072:52:1860:-142.995,0,-60.8206	1/1:213:0,213:0:0:213:7597:-683.77,-64.1194,0	1/1:283:0,283:0:0:283:10077:-906.868,-85.1915,0	0/1:34:19,15:19:676:15:540:-38.7015,0,-44.9742	0/1:19:7,12:7:252:12:432:-33.5016,0,-14.5337	0/1:139:77,62:77:2745:62:2220:-158.208,0,-182.729	1/1:137:0,137:0:0:137:4900:-441.141,-41.2411,0	0/1:126:60,66:60:2148:66:2365:-175.178,0,-130.982	1/1:111:0,111:0:0:111:3968:-357.312,-33.4143,0	1/1:33:0,33:0:0:33:1171:-105.697,-9.93399,0	1/1:127:0,127:0:0:127:4535:-408.316,-38.2308,0	1/1:102:0,102:0:0:102:3646:-328.345,-30.7051,0	0/1:33:18,15:18:644:15:532:-38.2785,0,-42.9693	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	1/1:84:0,84:0:0:84:2999:-270.142,-25.2865,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:45:0,45:0:0:45:1588:-143.208,-13.5464,0	0/1:20:13,7:13:468:7:248:-16.6436,0,-31.1109	0/1:259:146,113:146:5240:113:4056:-287.259,0,-346.814	0/1:240:123,117:123:4420:117:4196:-305.573,0,-286.635	0/1:85:51,34:51:1824:34:1212:-83.7963,0,-113.042	1/1:141:0,141:0:0:141:5036:-453.386,-42.4452,0	1/1:110:2,108:2:72:108:3849:-340.438,-26.9456,0	1/1:79:0,79:0:0:79:2804:-252.58,-23.7814,0	1/1:298:0,298:0:0:298:10622:-955.776,-89.7069,0	1/1:262:0,261:0:0:261:9318:-838.207,-78.5688,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:240:0,240:0:0:240:8580:-772.195,-72.2472,0	1/1:140:0,140:0:0:140:5016:-451.586,-42.1442,0	1/1:116:0,116:0:0:116:4149:-373.592,-34.9195,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:15:6,9:6:212:9:324:-24.9904,0,-13.3495	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:186:88,98:88:3160:98:3487:-258.044,0,-186.775	0/1:92:57,35:57:2048:35:1244:-84.5699,0,-138.573	0/1:36:13,23:13:468:23:828:-64.007,0,-26.323	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.7841	0/1:139:65,74:65:2321:74:2616:-193.845,0,-146.654	0/1:27:11,16:11:396:16:576:-44.0472,0,-24.4356	1/1:209:0,209:0:0:209:7464:-671.806,-62.9153,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	0/1:65:21,44:21:756:44:1580:-122.925,0,-42.1598	0/1:117:68,49:68:2432:49:1737:-121.392,0,-152.495	1/1:136:0,136:0:0:136:4852:-436.836,-40.9401,0	0/1:173:92,81:92:3273:81:2889:-208.167,0,-216.678	1/1:101:0,101:0:0:101:3599:-324.116,-30.404,0	0/1:87:43,44:43:1536:44:1580:-116.302,0,-99.4768	0/1:104:55,49:55:1949:49:1756:-127.012,0,-117.728	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:139:71,68:71:2533:68:2436:-177.652,0,-157.7	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:153:4,149:4:144:149:5331:-467.912,-34.0468,0	1/1:46:0,46:0:0:46:1616:-145.726,-13.8474,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-13.686	1/1:81:0,81:0:0:81:2888:-260.156,-24.3834,0	1/1:98:1,97:1:36:97:3454:-307.828,-26.2548,0	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.06287	1/1:209:0,209:0:0:209:7442:-669.825,-62.9153,0	0/1:186:98,88:98:3524:88:3150:-227.734,0,-230.3	1/1:69:1,68:1:36:68:2427:-214.982,-17.1728,0	1/1:105:0,105:0:0:105:3743:-337.026,-31.6082,0	1/1:216:1,215:1:36:215:7681:-688.079,-61.7763,0	0/1:253:154,99:154:5494:99:3536:-242.287,0,-370.936	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:75:53,22:53:1904:22:788:-48.6675,0,-126.497	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:145:71,74:71:2540:74:2652:-195.277,0,-156.401	0/1:97:43,54:43:1532:54:1931:-144.865,0,-92.165	1/1:136:0,136:0:0:136:4828:-434.57,-40.9401,0	0/1:171:95,76:95:3400:76:2712:-192.848,0,-225.789	0/1:47:18,29:18:648:29:1044:-80.126,0,-36.9978	0/1:126:53,72:53:1900:72:2584:-194.82,0,-111.696	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:129:61,68:61:2184:68:2417:-178.953,0,-138.932	0/1:109:68,41:68:2425:41:1436:-96.6978,0,-158.305	0/1:287:169,118:169:6053:118:4212:-292.864,0,-405.491	0/1:43:22,21:22:784:21:756:-55.4229,0,-51.1409	0/1:52:25,27:25:900:27:972:-72.1443,0,-57.5989	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	0/1:142:66,76:66:2376:76:2717:-202.026,0,-150.423	0/1:25:16,9:16:576:9:316:-21.2531,0,-37.7044	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	1/1:67:0,67:0:0:67:2404:-216.606,-20.169,0	0/1:18:6,12:6:216:12:424:-33.0779,0,-12.4353	0/1:44:28,16:28:1008:16:572:-38.5681,0,-69.0748	0/1:102:69,33:69:2468:33:1184:-76.1633,0,-170.528	1/1:185:0,185:0:0:185:6598:-593.9,-55.6906,0	1/1:97:0,97:0:0:97:3469:-312.421,-29.1999,0
chr01	33622300	.	C	G	84616.5	PASS	AB=0.583426;ABP=494.668;AC=94;AF=0.5;AN=188;AO=4779;CIGAR=1X;DP=8172;DPB=8172;DPRA=88.8043;EPP=10380.5;EPPR=7349.1;GTI=7;LEN=1;MEANALT=1.09783;MQM=59.991;MQMR=59.9917;NS=94;NUMALT=1;ODDS=1.15019;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170556;QR=121016;RO=3383;RPL=0;RPP=10380.5;RPPR=7349.1;RPR=4779;RUN=1;SAF=4779;SAP=10380.5;SAR=0;SRF=3383;SRP=7349.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:9,11:9:320:11:388:-29.2368,0,-23.1218	0/1:67:25,42:25:900:42:1512:-116.206,0,-61.152	0/1:89:30,59:30:1072:59:2112:-163.557,0,-70.0008	0/1:156:55,101:55:1968:101:3597:-276.976,0,-130.434	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:44:15,29:15:536:29:1036:-80.3086,0,-35.3295	0/1:77:35,42:35:1248:42:1512:-113.195,0,-89.4456	0/1:39:16,23:16:568:23:812:-61.6607,0,-39.7117	0/1:72:25,47:25:892:47:1692:-130.893,0,-58.9255	0/1:135:72,63:72:2572:63:2252:-162.304,0,-191.091	0/1:133:70,63:70:2495:63:2256:-163.266,0,-184.766	0/1:147:71,76:71:2531:76:2732:-201.871,0,-183.79	0/1:204:66,138:66:2356:138:4948:-384.059,0,-150.889	0/1:124:64,60:64:2287:60:2145:-155.988,0,-168.763	0/1:116:60,56:60:2148:56:2000:-145.354,0,-158.668	0/1:205:98,106:98:3498:106:3793:-279.945,0,-253.409	0/1:115:55,60:55:1955:60:2133:-157.618,0,-141.607	0/1:66:19,47:19:676:47:1660:-129.816,0,-41.3	0/1:45:12,33:12:432:33:1188:-93.0542,0,-25.6748	0/1:123:28,95:28:1000:95:3362:-265.769,0,-53.2887	1/1:35:3,32:3:108:32:1129:-91.8412,-0.46088,0	0/1:38:20,18:20:716:18:640:-46.4902,0,-53.3286	0/1:68:34,34:34:1204:34:1197:-87.5634,0,-88.1958	0/1:30:9,21:9:316:21:737:-57.6197,0,-19.748	0/1:316:140,176:140:5024:176:6285:-470.618,0,-357.179	0/1:133:67,66:67:2376:66:2360:-172.622,0,-174.062	0/1:65:38,26:38:1360:26:928:-64.3569,0,-103.221	0/1:123:62,60:62:2228:60:2156:-157.369,0,-163.846	0/1:163:70,93:70:2512:93:3336:-251.389,0,-177.264	0/1:90:43,47:43:1528:47:1665:-123.043,0,-110.72	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:265:82,183:82:2940:183:6518:-506.931,0,-185.061	0/1:133:45,87:45:1612:87:3092:-238.559,0,-105.421	0/1:114:43,71:43:1548:71:2510:-191.834,0,-105.296	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:106:41,65:41:1464:65:2313:-176.52,0,-100.147	0/1:51:13,38:13:464:38:1364:-107.708,0,-26.745	0/1:38:13,25:13:464:25:900:-69.8819,0,-30.6584	0/1:128:67,61:67:2387:61:2188:-158.654,0,-176.555	0/1:101:37,64:37:1328:64:2267:-173.889,0,-89.4182	0/1:36:8,28:8:288:28:985:-78.1244,0,-15.4303	0/1:78:31,47:31:1116:47:1680:-128.007,0,-77.2714	0/1:101:32,68:32:1129:68:2431:-188.582,0,-71.4537	0/1:87:45,42:45:1620:42:1504:-109.465,0,-119.9	0/1:118:37,81:37:1324:81:2912:-226.793,0,-83.9396	0/1:38:12,26:12:428:26:932:-72.7597,0,-27.4197	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:68:28,40:28:1004:40:1440:-109.428,0,-70.2058	0/1:44:26,18:26:928:18:644:-45.0453,0,-70.5929	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:73:35,37:35:1256:37:1324:-97.467,0,-91.3501	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:3:2,1:2:72:1:21:-1.19686,0,-5.93363	0/1:17:6,11:6:216:11:392:-30.5025,0,-14.673	0/1:60:28,32:28:1000:32:1140:-84.8468,0,-72.2536	0/1:307:154,153:154:5528:153:5451:-398.302,0,-405.098	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:162:84,78:84:3016:78:2788:-202.394,0,-222.903	0/1:88:22,66:22:788:66:2364:-186.528,0,-44.7542	0/1:74:30,44:30:1080:44:1570:-119.315,0,-75.237	0/1:41:16,25:16:576:25:900:-68.9788,0,-39.8328	0/1:119:64,55:64:2296:55:1955:-140.401,0,-171.079	0/1:27:3,23:3:108:23:805:-64.5813,0,-1.88856	0/1:67:37,30:37:1320:30:1080:-77.3442,0,-98.9329	0/1:47:22,25:22:788:25:900:-67.1726,0,-57.0964	0/1:225:108,117:108:3863:117:4167:-307.482,0,-280.133	0/1:32:13,19:13:468:19:680:-51.8962,0,-32.8267	0/1:53:21,32:21:748:32:1148:-87.6752,0,-51.6907	0/1:28:10,18:10:360:18:648:-50.223,0,-24.3155	0/1:145:62,83:62:2228:83:2957:-222.713,0,-157.135	0/1:70:23,47:23:824:47:1676:-130.055,0,-53.4112	0/1:100:37,63:37:1320:63:2260:-173.56,0,-88.9989	0/1:74:22,52:22:788:52:1842:-143.781,0,-48.9686	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:52:18,34:18:640:34:1205:-93.1003,0,-42.2758	0/1:44:23,21:23:820:21:737:-53.4053,0,-60.8772	0/1:70:28,42:28:992:42:1508:-114.943,0,-68.5223	0/1:146:39,105:39:1400:105:3741:-293.182,0,-82.5911	0/1:109:44,65:44:1572:65:2328:-176.968,0,-108.959	0/1:188:85,102:85:3043:102:3617:-269.08,0,-217.447	0/1:195:70,125:70:2503:125:4479:-344.577,0,-166.821	0/1:43:17,26:17:612:26:917:-69.9003,0,-42.4691	0/1:155:80,75:80:2833:75:2649:-191.994,0,-208.549	0/1:123:63,60:63:2256:60:2156:-157.28,0,-166.276	0/1:103:26,77:26:928:77:2740:-215.835,0,-52.8322	0/1:194:50,144:50:1792:144:5164:-406.5,0,-103.163	0/1:59:15,44:15:540:44:1571:-123.921,0,-31.1758	0/1:29:18,11:18:644:11:381:-25.8908,0,-49.5607	0/1:187:86,101:86:3096:101:3612:-268.992,0,-222.574
chr01	33622315	.	G	A	53073	PASS	AB=0.415927;ABP=501.04;AC=94;AF=0.5;AN=188;AO=3379;CIGAR=1X;DP=8152;DPB=8152;DPRA=43.8172;EPP=7271.09;EPPR=10285.1;GTI=7;LEN=1;MEANALT=1.02151;MQM=59.9917;MQMR=59.9937;NS=94;NUMALT=1;ODDS=0.336174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120828;QR=170574;RO=4771;RPL=8;RPP=7271.09;RPPR=10285.1;RPR=3371;RUN=1;SAF=3379;SAP=7340.42;SAR=0;SRF=4771;SRP=10363.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:70:45,25:45:1601:25:900:-60.2489,0,-123.306	0/1:86:56,30:56:1996:30:1040:-68.0165,0,-154.025	0/1:154:98,56:98:3475:56:1997:-133.643,0,-266.6	0/1:20:10,10:10:360:10:341:-24.9972,0,-26.7237	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:44:30,14:30:1064:14:485:-30.7317,0,-82.8263	0/1:78:43,35:43:1548:35:1244:-88.7821,0,-116.133	0/1:41:24,17:24:845:17:612:-43.0712,0,-64.0249	0/1:73:48,25:48:1701:25:896:-58.9852,0,-131.399	0/1:133:60,73:60:2145:73:2601:-194.301,0,-153.279	0/1:137:66,71:66:2368:71:2544:-187.97,0,-172.137	0/1:146:75,71:75:2675:71:2535:-184.45,0,-197.045	0/1:199:134,65:134:4801:65:2324:-149.515,0,-372.338	0/1:125:61,64:61:2188:64:2292:-168.913,0,-159.557	0/1:113:54,59:54:1916:59:2124:-157.412,0,-138.701	0/1:204:107,97:107:3816:97:3476:-251.641,0,-282.226	0/1:114:59,55:59:2116:55:1976:-143.797,0,-156.391	0/1:65:46,19:46:1648:19:680:-41.9622,0,-129.042	0/1:46:34,12:34:1220:12:428:-25.0114,0,-95.6314	0/1:120:93,27:93:3336:27:972:-51.6743,0,-264.333	0/0:36:33,3:33:1173:3:108:0,-0.76191,-95.8004	0/1:37:17,20:17:597:20:701:-52.2736,0,-42.918	0/1:69:34,35:34:1220:35:1229:-90.1395,0,-89.3357	0/1:29:20,9:20:704:9:324:-20.776,0,-54.9547	0/1:323:178,145:178:6361:145:5184:-369.466,0,-475.347	0/1:134:65,69:65:2340:69:2446:-180.055,0,-170.521	0/1:63:26,37:26:928:37:1332:-101.217,0,-64.8734	0/1:125:62,63:62:2208:63:2268:-166.753,0,-161.357	0/1:164:94,70:94:3361:70:2516:-177.323,0,-253.336	0/1:90:48,42:48:1720:42:1508:-108.922,0,-127.993	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/1:4:1,3:1:36:3:93:-7.47261,0,-2.39415	0/1:262:182,80:182:6506:80:2876:-180.206,0,-506.754	0/1:133:87,46:87:3073:46:1652:-108.931,0,-236.76	0/1:113:70,43:70:2512:43:1548:-105.597,0,-192.315	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:104:64,40:64:2304:40:1432:-97.8705,0,-176.313	0/1:52:39,13:39:1392:13:468:-26.8061,0,-109.925	0/1:38:25,13:25:900:13:468:-31.0205,0,-69.8819	0/1:128:60,68:60:2160:68:2444:-181.683,0,-156.135	0/1:103:66,37:66:2356:37:1324:-88.456,0,-181.293	0/1:35:27,8:27:957:8:273:-14.365,0,-75.9078	0/1:79:48,31:48:1724:31:1116:-76.9703,0,-131.664	0/1:100:69,31:69:2460:31:1116:-70.6487,0,-191.552	0/1:87:42,45:42:1504:45:1608:-118.82,0,-109.465	0/1:119:82,37:82:2936:37:1312:-82.5548,0,-228.652	0/1:37:25,12:25:896:12:432:-28.0831,0,-69.8222	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:67:39,28:39:1404:28:1008:-70.8673,0,-106.49	0/1:44:18,26:18:648:26:936:-71.3141,0,-45.4066	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:72:37,35:37:1324:35:1260:-92.0313,0,-97.7879	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:19:12,7:12:417:7:252:-17.3094,0,-32.1406	0/1:62:33,29:33:1172:29:1025:-73.8968,0,-87.1236	0/1:310:155,155:155:5559:155:5502:-401.93,0,-407.113	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:158:76,82:76:2713:82:2948:-217.99,0,-196.849	0/1:87:63,23:63:2240:23:824:-48.3786,0,-175.763	0/1:75:45,30:45:1593:30:1061:-73.2221,0,-121.081	0/1:42:26,16:26:921:16:576:-39.5317,0,-70.5619	0/1:119:55,64:55:1965:64:2277:-169.368,0,-141.301	0/1:27:24,3:24:864:3:108:-1.94736,0,-69.9548	0/1:66:29,37:29:1044:37:1318:-99.0537,0,-74.4068	0/1:47:25,22:25:900:22:788:-57.0964,0,-67.1726	0/1:224:115,109:115:4120:109:3889:-282.773,0,-303.553	0/1:31:18,13:18:644:13:468:-33.1277,0,-48.9587	0/1:54:33,21:33:1184:21:756:-52.1116,0,-90.6127	0/1:27:19,8:19:676:8:284:-17.7755,0,-53.0402	0/1:147:84,63:84:3011:63:2252:-158.692,0,-226.969	0/1:71:48,23:48:1728:23:824:-53.1102,0,-134.432	0/1:99:64,35:64:2265:35:1252:-83.1831,0,-174.31	0/1:74:52,22:52:1864:22:777:-47.9741,0,-145.763	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:51:34,17:34:1224:17:612:-40.0609,0,-95.1145	0/1:43:20,22:20:697:22:792:-58.6407,0,-50.0861	0/1:69:42,27:42:1504:27:972:-67.0268,0,-114.884	0/1:148:106,42:106:3780:42:1508:-91.4622,0,-295.848	0/1:107:65,42:65:2317:42:1504:-103.444,0,-176.579	0/1:185:101,84:101:3624:84:3001:-214.629,0,-270.674	0/1:192:124,68:124:4432:68:2440:-162.057,0,-341.254	0/1:43:26,17:26:924:17:612:-42.4691,0,-70.5334	0/1:153:74,79:74:2664:79:2832:-209.061,0,-193.947	0/1:123:60,63:60:2152:63:2245:-165.287,0,-156.921	0/1:98:73,25:73:2624:25:900:-51.8201,0,-206.906	0/1:195:145,50:145:5189:50:1800:-103.581,0,-408.447	0/1:59:44,15:44:1572:15:540:-31.1758,0,-124.011	0/1:28:10,18:10:360:18:648:-50.223,0,-24.3155	0/1:187:101,86:101:3628:86:3080:-221.136,0,-270.431
chr01	33622480	.	A	G	14936.5	PASS	AB=0.302728;ABP=1390.93;AC=42;AF=0.225806;AN=186;AO=1249;CIGAR=1X;DP=9645;DPB=9645;DPRA=1.02208;EPP=2715.18;EPPR=18226;GTI=7;LEN=1;MEANALT=1.04255;MQM=59.9392;MQMR=59.9651;NS=93;NUMALT=1;ODDS=3.62914;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44602;QR=300722;RO=8392;RPL=1249;RPP=2715.18;RPPR=18226;RPR=0;RUN=1;SAF=0;SAP=2715.18;SAR=1249;SRF=0;SRP=18226;SRR=8392;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:30,21:30:1076:21:756:-53.0147,0,-80.8612	0/1:82:59,23:59:2116:23:816:-49.0691,0,-166.024	0/0:218:217,1:217:7804:1:36:0,-62.0263,-698.786	0/0:156:155,1:155:5552:1:36:0,-43.3624,-496.206	0/0:30:28,2:28:1004:2:72:0,-2.19418,-83.8391	0/1:14:11,3:11:396:3:108:-5.86075,0,-30.8233	0/1:86:63,23:63:2256:23:817:-47.9622,0,-177.414	0/0:138:138,0:138:4924:0:0:0,-41.5421,-443.313	0/1:84:70,14:70:2500:14:496:-19.6877,0,-199.966	0/1:59:43,16:43:1544:16:557:-32.6948,0,-121.492	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/0:211:210,1:210:7471:1:36:0,-59.9191,-668.836	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/1:61:44,17:44:1576:17:612:-37.0506,0,-123.765	0/0:143:143,0:143:5140:0:0:0,-43.0473,-462.739	0/0:113:113,0:113:4022:0:0:0,-34.0164,-362.167	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:35:29,6:29:1036:6:216:-9.25446,0,-83.0179	0/1:210:147,62:147:5264:62:2220:-136.937,0,-410.77	0/1:92:66,26:66:2340:26:932:-56.5041,0,-182.228	0/1:125:92,33:92:3296:33:1188:-69.5998,0,-259.23	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.324	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:282:282,0:282:10113:0:0:0,-84.8905,-910.042	0/0:346:346,0:346:12405:0:0:0,-104.156,-1116.28	0/0:56:56,0:56:2016:0:0:0,-16.8577,-180.775	0/0:362:361,0:361:12944:0:0:0,-108.672,-1164.39	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.796	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:290:217,73:217:7764:73:2612:-148.029,0,-611.493	0/1:119:102,17:102:3652:17:612:-19.5909,0,-293.062	0/1:48:31,17:31:1108:17:593:-39.2453,0,-85.5816	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:106:61,45:61:2184:45:1616:-113.821,0,-164.917	0/1:41:32,9:32:1152:9:316:-16.4366,0,-91.6479	0/0:162:162,0:162:5781:0:0:0,-48.7669,-520.405	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/1:58:38,20:38:1360:20:720:-47.669,0,-105.236	0/1:79:58,21:58:2084:21:752:-44.2249,0,-164.049	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.361	0/1:181:124,57:124:4436:57:2023:-127.855,0,-344.925	0/0:148:148,0:148:5308:0:0:0,-44.5524,-477.853	0/1:88:62,26:62:2232:26:917:-56.354,0,-174.653	0/1:234:184,50:184:6600:50:1788:-90.7616,0,-523.637	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:131:79,50:79:2836:50:1785:-121.882,0,-216.431	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:170:170,0:170:6081:0:0:0,-51.1751,-547.383	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.324	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.518	0/0:208:208,0:208:7464:0:0:0,-62.6142,-671.801	.:.:.:.:.:.:.:.	0/0:218:218,0:218:7800:0:0:0,-65.6245,-702.03	0/1:163:112,51:112:4004:51:1836:-116.453,0,-311.482	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.941	0/0:206:205,1:205:7344:1:36:0,-58.4139,-657.41	0/1:114:59,55:59:2116:55:1972:-143.437,0,-156.391	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:81:60,21:60:2160:21:752:-43.6228,0,-170.283	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.735	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:147:95,52:95:3404:52:1849:-122.438,0,-260.45	0/1:109:72,37:72:2584:37:1328:-87.01,0,-199.997	0/0:136:136,0:136:4880:0:0:0,-40.9401,-439.347	0/1:204:120,84:120:4300:84:2974:-206.471,0,-325.766	0/1:59:46,13:46:1640:13:468:-24.6989,0,-130.128	0/1:60:39,21:39:1400:21:752:-49.9445,0,-108.237	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:90:61,29:61:2184:29:1032:-65.4683,0,-169.733	0/1:103:70,33:70:2480:33:1175:-75.0509,0,-192.449	0/1:140:100,40:100:3588:40:1428:-86.6733,0,-280.982	0/1:74:54,20:54:1936:20:720:-42.8526,0,-152.24	0/1:70:48,22:48:1724:22:792:-50.5336,0,-134.373	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/1:171:117,54:117:4204:54:1920:-121.599,0,-327.063	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/0:149:149,0:149:5340:0:0:0,-44.8535,-480.732	0/0:136:136,0:136:4888:0:0:0,-40.9401,-440.07	0/1:43:34,9:34:1224:9:320:-16.1981,0,-97.5228	0/1:86:66,20:66:2353:20:720:-39.2356,0,-186.139	0/1:70:39,31:39:1392:31:1104:-78.5985,0,-104.507	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.518	0/0:176:176,0:176:6328:0:0:0,-52.9813,-569.608
chr01	33649428	.	G	A	17072.3	PASS	AB=0.555244;ABP=50.2748;AC=45;AF=0.247253;AN=182;AO=998;CIGAR=1X;DP=3356;DPB=3356;DPRA=1.27017;EPP=2170.14;EPPR=5119;GTI=2;LEN=1;MEANALT=1.04167;MQM=59.9719;MQMR=59.9941;NS=91;NUMALT=1;ODDS=0.803209;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35785;QR=84006;RO=2356;RPL=0;RPP=2170.14;RPPR=5119;RPR=998;RUN=1;SAF=998;SAP=2170.14;SAR=0;SRF=2356;SRP=5119;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:16,6:16:576:6:216:-13.1679,0,-45.5523	0/1:35:12,23:12:432:23:824:-63.9464,0,-28.6851	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/1:33:16,17:16:576:17:597:-44.1221,0,-42.241	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:28:15,12:15:540:12:428:-30.3699,0,-40.4489	0/0:67:66,1:66:2338:1:32:0,-16.9697,-207.477	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:29:17,12:17:597:12:428:-30.1289,0,-45.3263	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:68:68,0:68:2433:0:0:0,-20.47,-219.224	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:53:17,35:17:612:35:1260:-97.8378,0,-39.5416	0/1:46:17,29:17:608:29:1044:-80.4274,0,-41.2046	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:38:37,1:37:1317:1:36:0,-7.84086,-115.232	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/0:66:66,0:66:2331:0:0:0,-19.868,-210.045	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:48:48,0:48:1698:0:0:0,-14.4494,-153.102	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:111:58,53:58:2088:53:1900:-137.864,0,-154.775	0/1:76:27,49:27:953:49:1760:-135.806,0,-63.205	0/1:31:16,15:16:561:15:540:-39.6046,0,-41.4852	.:.:.:.:.:.:.:.	0/1:54:22,32:22:792:32:1152:-87.7299,0,-55.3501	0/1:31:16,15:16:576:15:536:-39.2429,0,-42.8431	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:43:23,20:23:805:20:720:-52.1799,0,-59.8232	0/1:66:31,35:31:1112:35:1260:-93.8375,0,-80.5234	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:66:23,43:23:828:43:1544:-119.385,0,-54.9761	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/1:38:19,19:19:654:19:684:-50.4512,0,-47.7384	0/1:62:27,35:27:968:35:1256:-94.6814,0,-68.7735	.:.:.:.:.:.:.:.	0/1:34:12,22:12:432:22:788:-61.0098,0,-28.9862	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:22:22,0:22:777:0:0:0,-6.62266,-70.2504	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726	.:.:.:.:.:.:.:.	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:61:28,33:28:1004:33:1184:-88.5055,0,-72.313	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:49:47,2:47:1642:2:72:0,-7.91375,-141.219	0/1:56:12,44:12:432:44:1580:-125.634,0,-22.3635	0/0:28:27,1:27:972:1:36:0,-4.83056,-84.1996	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/0:40:40,0:40:1410:0:0:0,-12.0412,-127.193	0/1:6:5,1:5:150:1:36:-1.79209,0,-11.989	0/1:62:33,29:33:1158:29:1018:-73.2649,0,-85.8587	0/1:40:24,16:24:864:16:572:-39.7722,0,-66.0414	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:58:30,28:30:1065:28:1008:-73.5751,0,-78.7	0/1:54:19,35:19:684:35:1256:-97.0815,0,-45.6347	0/1:42:10,32:10:360:32:1152:-91.3469,0,-20.101	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:39:9,30:9:324:30:1080:-85.7731,0,-17.7657	0/1:43:15,28:15:525:28:1008:-78.0921,0,-34.6338	0/1:90:34,56:34:1205:56:2016:-154.62,0,-81.6612	0/1:35:17,18:17:612:18:644:-47.7545,0,-44.8774	0/1:41:25,16:25:900:16:576:-39.8328,0,-68.9788	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/1:50:31,19:31:1112:19:665:-45.1213,0,-85.3398	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/1:66:34,32:34:1209:32:1152:-84.1222,0,-89.2462	0/1:35:8,27:8:273:27:953:-75.5473,0,-14.3641	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433
chr01	33649448	.	G	T	20010.3	PASS	AB=0.554231;ABP=47.9947;AC=45;AF=0.247253;AN=182;AO=985;CIGAR=1X;DP=3321;DPB=3321;DPRA=1.28636;EPP=1187.49;EPPR=2442.57;GTI=2;LEN=1;MEANALT=1;MQM=59.9716;MQMR=59.994;NS=91;NUMALT=1;ODDS=0.964393;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35270;QR=83656;RO=2336;RPL=859;RPP=1187.49;RPPR=2442.57;RPR=126;RUN=1;SAF=985;SAP=2141.91;SAR=0;SRF=2336;SRP=5075.57;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:16,6:16:576:6:212:-12.8021,0,-45.5523	0/1:35:12,23:12:417:23:820:-63.5858,0,-27.3242	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:33:16,17:16:576:17:612:-45.4794,0,-42.241	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:26:14,12:14:504:12:420:-30.3066,0,-37.8713	0/0:65:64,1:64:2296:1:36:0,-15.9687,-203.303	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:29:17,12:17:608:12:432:-30.4913,0,-46.3222	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.414	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:29:14,15:14:504:15:536:-39.8449,0,-36.9682	0/0:39:39,0:39:1389:0:0:0,-11.7402,-125.307	0/0:49:48,1:48:1724:1:36:0,-11.1522,-151.847	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:51:17,34:17:612:34:1220:-94.7543,0,-40.0609	0/1:45:17,28:17:608:28:1000:-76.769,0,-41.5057	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:39:38,1:38:1360:1:36:0,-8.14189,-119.102	0/0:37:37,0:37:1305:0:0:0,-11.1381,-117.749	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:4:4,0:4:121:0:0:0,-1.20412,-11.1896	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:107:55,52:55:1980:52:1860:-135.469,0,-146.264	0/1:73:27,46:27:968:46:1645:-126.363,0,-65.4622	0/1:31:16,15:16:572:15:540:-39.6046,0,-42.4815	.:.:.:.:.:.:.:.	0/1:54:22,32:22:792:32:1148:-87.3696,0,-55.3501	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:43:23,20:23:811:20:712:-51.4577,0,-60.3657	0/1:63:28,35:28:1008:35:1260:-94.7406,0,-72.0715	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:65:23,42:23:824:42:1497:-115.456,0,-54.9164	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:38:19,19:19:684:19:684:-50.4512,0,-50.4512	0/1:62:27,35:27:968:35:1252:-94.3212,0,-68.7735	.:.:.:.:.:.:.:.	0/1:32:12,20:12:432:20:690:-52.7838,0,-29.5882	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:80:80,0:80:2827:0:0:0,-24.0824,-254.668	.:.:.:.:.:.:.:.	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:62:29,33:29:1040:33:1180:-87.8442,0,-75.2505	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:50:48,2:48:1724:2:68:0,-8.59379,-148.975	0/1:54:12,42:12:428:42:1512:-120.119,0,-22.6032	0/0:26:25,1:25:892:1:36:0,-4.2285,-77.0014	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/0:40:40,0:40:1416:0:0:0,-12.0412,-127.735	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:63:33,30:33:1188:30:1080:-78.5484,0,-88.2637	0/1:40:24,16:24:864:16:576:-40.1338,0,-66.0414	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:58:30,28:30:1080:28:985:-71.5002,0,-80.0535	0/1:54:19,35:19:684:35:1260:-97.4417,0,-45.6347	0/1:42:10,32:10:360:32:1137:-89.9937,0,-20.101	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:39:9,30:9:324:30:1080:-85.7731,0,-17.7657	0/1:43:15,28:15:532:28:1004:-77.7316,0,-35.2688	0/1:89:34,55:34:1224:55:1972:-150.963,0,-83.6754	0/1:35:17,18:17:612:18:648:-48.1158,0,-44.8774	0/1:41:25,16:25:896:16:576:-39.8328,0,-68.6181	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:50:31,19:31:1116:19:684:-46.8388,0,-85.7002	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/1:65:34,31:34:1224:31:1116:-81.1847,0,-90.9001	0/1:33:7,26:7:252:26:936:-74.6255,0,-13.095	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307
chr01	33650034	.	AATG	GATT,AATT	114785	PASS	AB=0.479053,0.518033;ABP=13.4721,10.7635;AC=142,46;AF=0.755319,0.244681;AN=188;AO=4068,1427;CIGAR=1X2M1X,3M1X;DP=5514;DPB=5514;DPRA=0,1.10054;EPP=8836.56,3101.7;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.69149,2.14;MQM=45.047,58.5648;MQMR=0;NS=94;NUMALT=2;ODDS=0.0634504;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=144111,51074;QR=0;RO=0;RPL=0,0;RPP=8836.56,3101.7;RPPR=0;RPR=4068,1427;RUN=1,1;SAF=4068,1427;SAP=8836.56,3101.7;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:31:0,10,21:0:0:10,21:360,752:-90.0234,-61.5946,-58.5843,-28.7808,0,-22.4591	1/2:35:0,20,15:0:0:20,15:692,540:-99.0621,-44.4074,-38.3868,-55.0048,0,-50.4893	1/1:63:0,63,0:0:0:63,0:2240,0:-196.756,-18.9649,0,-196.756,-18.9649,-196.756	1/1:146:0,146,0:0:0:146,0:5182,0:-458.021,-43.9504,0,-458.021,-43.9504,-458.021	1/2:110:0,37,73:0:0:37,73:1314,2596:-316.844,-211.651,-200.513,-105.544,0,-83.5686	1/2:77:0,25,52:0:0:25,52:891,1864:-222.633,-151.943,-144.417,-71.0413,0,-55.3877	1/2:51:0,26,25:0:0:26,25:927,892:-147.484,-73.0739,-65.2472,-74.7645,0,-67.2388	1/1:73:0,71,2:0:0:71,2:2511,72:-221.039,-21.3731,0,-215.166,-15.1404,-214.564	1/2:67:0,29,38:0:0:29,38:1001,1349:-187.992,-109.643,-100.913,-78.6907,0,-67.2515	1/2:66:0,27,38:0:0:27,38:953,1360:-186.435,-110.89,-102.762,-75.6119,0,-64.1728	1/1:27:0,27,0:0:0:27,0:971,0:-86.5807,-8.12781,0,-86.5807,-8.12781,-86.5807	1/1:76:0,74,0:0:0:74,0:2620,0:-229.455,-22.2762,0,-229.455,-22.2762,-229.455	1/1:58:0,58,0:0:0:58,0:2069,0:-181.68,-17.4597,0,-181.68,-17.4597,-181.68	1/2:33:0,14,19:0:0:14,19:503,684:-96.5843,-56.1708,-51.9563,-40.7702,0,-35.0506	1/1:53:0,53,0:0:0:53,0:1905,0:-169.705,-15.9546,0,-169.705,-15.9546,-169.705	1/1:44:0,44,0:0:0:44,0:1556,0:-138.212,-13.2453,0,-138.212,-13.2453,-138.212	1/1:28:0,28,0:0:0:28,0:981,0:-86.0066,-8.42884,0,-86.0066,-8.42884,-86.0066	1/1:24:0,24,0:0:0:24,0:850,0:-75.1414,-7.22472,0,-75.1414,-7.22472,-75.1414	1/2:18:0,8,10:0:0:8,10:287,360:-52.5406,-29.708,-27.2998,-23.1872,0,-20.1769	1/2:63:0,19,44:0:0:19,44:670,1580:-183.143,-129.218,-123.498,-54.2772,0,-41.0319	1/2:97:0,47,50:0:0:47,50:1673,1795:-280.017,-146.561,-132.412,-133.81,0,-118.758	1/1:66:0,66,0:0:0:66,0:2321,0:-206.535,-19.868,0,-206.535,-19.868,-206.535	1/1:66:0,65,1:0:0:65,1:2282,36:-202.605,-19.567,0,-199.667,-16.2697,-199.366	1/2:18:0,16,2:0:0:16,2:562,72:-51.3099,-6.23466,-1.41818,-45.4336,0,-44.8315	1/1:61:0,61,0:0:0:61,0:2174,0:-192.314,-18.3628,0,-192.314,-18.3628,-192.314	1/1:159:0,159,0:0:0:159,0:5630,0:-501.55,-47.8638,0,-501.55,-47.8638,-501.55	1/1:179:0,179,0:0:0:179,0:6368,0:-563.08,-53.8844,0,-563.08,-53.8844,-563.08	1/1:25:0,25,0:0:0:25,0:888,0:-78.4197,-7.52575,0,-78.4197,-7.52575,-78.4197	1/1:146:0,144,0:0:0:144,0:5098,0:-453.591,-43.3483,0,-453.591,-43.3483,-453.591	1/1:72:0,72,0:0:0:72,0:2535,0:-224.068,-21.6742,0,-224.068,-21.6742,-224.068	1/1:58:0,58,0:0:0:58,0:2079,0:-185.37,-17.4597,0,-185.37,-17.4597,-185.37	1/1:5:0,5,0:0:0:5,0:180,0:-16.3232,-1.50515,0,-16.3232,-1.50515,-16.3232	1/2:19:0,10,9:0:0:10,9:345,324:-54.4285,-26.7966,-23.7863,-27.9826,0,-25.2733	1/2:6:0,5,1:0:0:5,1:178,36:-17.1493,-3.21998,-1.71483,-14.2799,0,-13.9789	1/1:1:0,1,0:0:0:1,0:36,0:-3.52101,-0.30103,0,-3.52101,-0.30103,-3.52101	1/1:23:0,23,0:0:0:23,0:803,0:-70.6621,-6.92369,0,-70.6621,-6.92369,-70.6621	1/2:159:0,79,80:0:0:79,80:2808,2880:-460.631,-235.111,-211.329,-225.876,0,-201.793	1/2:79:0,46,33:0:0:46,33:1640,1180:-226.886,-96.5067,-82.6593,-130.733,0,-120.799	1/2:21:0,14,7:0:0:14,7:504,252:-61.0605,-20.9153,-16.7009,-40.5024,0,-38.3952	1/1:1:0,1,0:0:0:1,0:28,0:-2.68083,-0.30103,0,-2.68083,-0.30103,-2.68083	1/2:79:0,39,40:0:0:39,40:1383,1440:-228.5,-117.85,-106.11,-111.004,0,-98.9625	1/2:19:0,12,7:0:0:12,7:431,252:-55.5488,-20.9217,-17.3094,-34.9848,0,-32.8776	1/1:87:0,85,1:0:0:85,1:3002,36:-264.555,-25.5876,0,-261.617,-22.6476,-261.316	1/1:30:0,30,0:0:0:30,0:1059,0:-94.0028,-9.0309,0,-94.0028,-9.0309,-94.0028	1/2:26:0,18,8:0:0:18,8:641,284:-73.6036,-23.1195,-17.701,-50.8323,0,-48.4241	1/2:90:0,46,44:0:0:46,44:1642,1552:-259.473,-126.706,-112.859,-133.12,0,-119.875	1/1:77:0,77,0:0:0:77,0:2726,0:-238.984,-23.1793,0,-238.984,-23.1793,-238.984	1/2:101:0,51,50:0:0:51,50:1818,1783:-291.694,-145.153,-129.801,-146.895,0,-131.843	1/1:55:0,55,0:0:0:55,0:1942,0:-172.806,-16.5567,0,-172.806,-16.5567,-172.806	1/2:75:0,41,34:0:0:41,34:1460,1212:-216.698,-99.1205,-86.7783,-117.931,0,-107.696	1/2:41:0,22,19:0:0:22,19:776,671:-117.447,-54.9929,-48.3702,-62.8051,0,-57.0855	1/2:10:0,9,1:0:0:9,1:323,36:-29.3627,-3.26578,-0.556512,-26.4535,0,-26.1525	1/2:62:0,27,35:0:0:27,35:951,1256:-177.263,-101.556,-93.4285,-76.0564,0,-65.5203	1/1:32:0,32,0:0:0:32,0:1140,0:-102.358,-9.63296,0,-102.358,-9.63296,-102.358	1/1:11:0,11,0:0:0:11,0:377,0:-33.6284,-3.31133,0,-33.6284,-3.31133,-33.6284	1/1:62:0,62,0:0:0:62,0:2197,0:-190.985,-18.6639,0,-190.985,-18.6639,-190.985	1/1:27:0,27,0:0:0:27,0:944,0:-83.4179,-8.12781,0,-83.4179,-8.12781,-83.4179	1/1:6:0,6,0:0:0:6,0:215,0:-19.5845,-1.80618,0,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chr01	33676379	.	T	C	105782	PASS	AB=0.4477;ABP=89.7764;AC=139;AF=0.747312;AN=186;AO=5104;CIGAR=1X;DP=7136;DPB=7136;DPRA=78.3956;EPP=11086.2;EPPR=4411.1;GTI=1;LEN=1;MEANALT=1.02198;MQM=59.9696;MQMR=60;NS=93;NUMALT=1;ODDS=0.0420132;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182000;QR=70364;RO=2030;RPL=5104;RPP=11086.2;RPPR=4411.1;RPR=0;RUN=1;SAF=0;SAP=11086.2;SAR=5104;SRF=0;SRP=4411.1;SRR=2030;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:90:40,50:40:1390:50:1781:-133.478,0,-98.3002	0/1:58:35,23:35:1198:23:820:-56.6628,0,-90.6585	1/1:111:1,110:1:36:110:3930:-350.291,-29.8161,0	1/1:95:0,95:0:0:95:3377:-304.145,-28.5979,0	0/1:68:29,39:29:997:39:1370:-103.124,0,-69.5648	0/1:22:16,6:16:549:6:216:-13.1679,0,-43.1098	0/1:44:30,14:30:1046:14:489:-31.0936,0,-81.2006	1/1:92:1,91:1:36:91:3264:-290.382,-24.0965,0	0/1:119:58,61:58:1985:61:2177:-160.372,0,-143.094	0/1:96:60,36:60:2089:36:1292:-87.6849,0,-159.381	1/1:41:0,41:0:0:41:1448:-130.613,-12.3422,0	1/1:118:0,118:0:0:118:4192:-377.462,-35.5215,0	1/1:100:0,100:0:0:100:3592:-323.486,-30.103,0	0/1:64:30,34:30:1068:34:1224:-91.2011,0,-77.1661	1/1:71:1,70:1:32:70:2502:-222.232,-18.1738,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:22:8,14:8:284:14:504:-39.0754,0,-19.2807	0/1:142:90,51:90:3006:51:1820:-121.276,0,-227.956	0/1:201:105,96:105:3653:96:3428:-248.227,0,-268.467	1/1:112:0,112:0:0:112:3949:-355.602,-33.7154,0	1/1:80:0,80:0:0:80:2845:-256.287,-24.0824,0	1/1:35:3,32:3:108:32:1144:-93.1943,-0.46088,0	1/1:75:0,75:0:0:75:2676:-241.084,-22.5773,0	1/1:189:0,189:0:0:189:6739:-606.312,-56.8947,0	1/1:201:0,201:0:0:201:7140:-642.646,-60.507,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:196:1,195:1:36:195:6942:-621.248,-55.4036,0	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	1/1:49:0,49:0:0:49:1726:-155.621,-14.7505,0	.:.:.:.:.:.:.:.	0/1:5:3,2:3:104:2:68:-4.95256,0,-8.19766	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:206:113,93:113:4001:93:3327:-237.635,0,-298.267	0/1:72:39,33:39:1324:33:1176:-84.4736,0,-97.7753	0/1:35:10,25:10:345:25:896:-70.4243,0,-20.8448	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:79:56,23:56:1940:23:789:-47.5402,0,-151.088	0/1:47:17,30:17:608:30:1076:-83.0044,0,-40.9036	1/1:108:0,108:0:0:108:3853:-346.965,-32.5112,0	1/1:96:0,96:0:0:96:3440:-309.813,-28.8989,0	0/1:87:54,33:54:1924:33:1180:-80.3184,0,-147.247	0/1:98:47,51:47:1615:51:1813:-133.949,0,-116.132	1/1:99:0,99:0:0:99:3536:-318.421,-29.802,0	0/1:128:74,54:74:2508:54:1936:-135.985,0,-187.432	1/1:85:0,85:0:0:85:3045:-274.278,-25.5876,0	0/1:75:44,31:44:1520:31:1116:-78.1744,0,-114.507	0/1:67:45,22:45:1581:22:788:-51.0758,0,-122.409	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:215:134,81:134:4564:81:2893:-195.883,0,-346.208	1/1:26:0,26:0:0:26:906:-81.8518,-7.82678,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:82:0,82:0:0:82:2916:-262.674,-24.6845,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:10:5,5:5:165:5:180:-13.5418,0,-12.1633	1/1:84:0,84:0:0:84:2991:-269.421,-25.2865,0	1/1:83:0,83:0:0:83:2971:-267.622,-24.9855,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:123:0,123:0:0:123:4378:-394.192,-37.0267,0	0/1:98:60,38:60:2077:38:1345:-91.8472,0,-157.691	1/1:47:0,47:0:0:47:1665:-150.136,-14.1484,0	1/1:58:2,56:2:72:56:1982:-171.814,-10.623,0	1/1:106:3,103:3:104:103:3672:-320.98,-22.2064,0	0/1:93:51,41:51:1766:41:1472:-104.819,0,-131.263	1/1:35:1,34:1:32:34:1220:-106.907,-7.33674,0	0/1:44:30,14:30:1049:14:500:-32.0909,0,-81.4729	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:88:55,33:55:1877:33:1165:-78.6644,0,-142.709	0/1:134:84,50:84:2857:50:1794:-121.404,0,-217.023	1/1:127:0,127:0:0:127:4519:-406.699,-38.2308,0	0/1:124:66,58:66:2284:58:2065:-148.791,0,-168.489	0/1:79:37,42:37:1267:42:1500:-111.513,0,-90.5427	0/1:80:38,42:38:1295:42:1493:-110.58,0,-92.7575	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:102:61,41:61:2101:41:1468:-101.711,0,-158.647	0/1:70:40,30:40:1417:30:1072:-75.7204,0,-106.753	0/1:202:117,85:117:4079:85:3044:-213.382,0,-306.486	0/1:55:26,29:26:924:29:1044:-77.7182,0,-66.921	0/1:72:35,37:35:1244:37:1313:-96.7955,0,-90.5905	1/1:52:0,52:0:0:52:1855:-167.229,-15.6536,0	0/1:146:70,76:70:2482:76:2719:-201.002,0,-179.68	0/1:28:9,19:9:320:19:680:-53.1003,0,-20.7135	1/1:86:0,86:0:0:86:3056:-275.111,-25.8886,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:25:11,14:11:392:14:500:-37.8104,0,-28.0943	0/1:74:30,44:30:1064:44:1580:-120.215,0,-73.7954	0/1:86:52,34:52:1841:34:1220:-84.2182,0,-140.08	1/1:121:0,121:0:0:121:4321:-389.065,-36.4246,0	1/1:108:0,108:0:0:108:3843:-346.065,-32.5112,0
chr01	33728851	.	CAG	GAA,GAG	147305	PASS	AB=0.506439,0.491472;ABP=4.04502,4.82503;AC=144,42;AF=0.774194,0.225806;AN=186;AO=4646,1427;CIGAR=1X1M1X,1X2M;DP=6089;DPB=6089;DPRA=0,1.37775;EPP=45.075,98.8792;EPPR=0;GTI=0;LEN=3,1;MEANALT=1.73118,2.13208;MQM=39.0394,31.1184;MQMR=0;NS=93;NUMALT=2;ODDS=3.07097;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=163308,44137;QR=0;RO=0;RPL=4631,1426;RPP=9961.8,3093.02;RPPR=0;RPR=15,1;RUN=1,1;SAF=2458,838;SAP=37.0827,97.3575;SAR=2188,589;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:16:0,6,10:0:0:6,10:211,272:-34.2646,-19.0064,-17.2002,-15.5462,0,-12.5359	1/2:62:0,33,29:0:0:33,29:1159,832:-145.982,-58.5583,-48.6243,-87.7133,0,-78.9834	1/1:116:0,113,2:0:0:113,2:3992,66:-333.621,-34.0164,0,-328.569,-28.9133,-327.967	1/1:46:0,45,1:0:0:45,1:1605,32:-139.716,-13.5464,0,-137.409,-10.9483,-137.108	1/2:28:0,18,10:0:0:18,10:621,310:-69.9822,-22.4619,-17.0434,-47.8169,0,-44.8066	1/2:24:0,12,12:0:0:12,12:419,323:-53.1826,-22.6154,-19.003,-30.8456,0,-27.2332	1/2:52:0,30,22:0:0:30,22:1042,713:-131.968,-51.8836,-42.8527,-80.3936,0,-73.7709	1/1:56:0,56,0:0:0:56,0:1938,0:-160.787,-16.8577,0,-160.787,-16.8577,-160.787	1/2:50:0,30,20:0:0:30,20:1040,575:-117.527,-40.5738,-31.5429,-77.235,0,-71.2144	1/2:38:0,19,19:0:0:19,19:654,614:-94.9127,-44.8485,-39.1289,-50.3743,0,-44.6547	1/1:100:0,100,0:0:0:100,0:3477,0:-299.858,-30.103,0,-299.858,-30.103,-299.858	1/1:126:0,125,1:0:0:125,1:4429,36:-370.254,-37.6288,0,-367.316,-34.3315,-367.015	1/1:130:0,128,2:0:0:128,2:4444,63:-371.249,-38.5318,0,-366.22,-33.1892,-365.617	1/2:162:0,77,85:0:0:77,85:2709,2566:-389.04,-182.78,-159.6,-206.564,0,-180.976	1/1:106:0,104,0:0:0:104,0:3680,0:-316.661,-31.3071,0,-316.661,-31.3071,-316.661	1/1:115:0,115,0:0:0:115,0:4076,0:-348.628,-34.6185,0,-348.628,-34.6185,-348.628	1/1:157:0,156,1:0:0:156,1:5492,36:-460.676,-46.9607,0,-457.752,-43.6787,-457.451	1/1:108:0,107,1:0:0:107,1:3812,36:-314.97,-32.2102,0,-312.05,-28.9325,-311.749	1/2:156:0,82,74:0:0:82,74:2857,2062:-355.252,-143.762,-119.077,-211.772,0,-189.496	1/2:55:0,30,25:0:0:30,25:1050,807:-139.425,-58.6274,-49.5965,-81.1086,0,-73.5828	1/2:41:0,24,17:0:0:24,17:838,530:-102.317,-38.261,-31.0363,-64.3573,0,-59.2398	1/1:9:0,9,0:0:0:9,0:319,0:-28.2417,-2.70927,0,-28.2417,-2.70927,-28.2417	1/1:16:0,16,0:0:0:16,0:569,0:-48.5597,-4.81648,0,-48.5597,-4.81648,-48.5597	1/1:49:0,47,2:0:0:47,2:1644,60:-140.951,-14.1484,0,-136.698,-9.62201,-136.096	1/1:38:0,38,0:0:0:38,0:1299,0:-111.869,-11.4391,0,-111.869,-11.4391,-111.869	1/1:77:0,77,0:0:0:77,0:2703,0:-237.059,-23.1793,0,-237.059,-23.1793,-237.059	1/1:71:0,70,1:0:0:70,1:2496,30:-210.862,-21.0721,0,-208.734,-18.6739,-208.433	1/1:64:0,64,0:0:0:64,0:2259,0:-192.436,-19.2659,0,-192.436,-19.2659,-192.436	1/1:67:0,67,0:0:0:67,0:2371,0:-207.777,-20.169,0,-207.777,-20.169,-207.777	1/1:28:0,28,0:0:0:28,0:952,0:-81.4631,-8.42884,0,-81.4631,-8.42884,-81.4631	1/1:47:0,46,0:0:0:46,0:1625,0:-140.112,-13.8474,0,-140.112,-13.8474,-140.112	1/1:5:0,5,0:0:0:5,0:180,0:-15.4478,-1.50515,0,-15.4478,-1.50515,-15.4478	1/2:4:0,1,3:0:0:1,3:36,92:-9.60458,-6.84123,-6.5402,-3.08657,0,-2.18348	1/1:4:0,4,0:0:0:4,0:141,0:-10.9928,-1.20412,0,-10.9928,-1.20412,-10.9928	1/1:4:0,4,0:0:0:4,0:132,0:-10.5092,-1.20412,0,-10.5092,-1.20412,-10.5092	1/1:8:0,8,0:0:0:8,0:286,0:-24.0949,-2.40824,0,-24.0949,-2.40824,-24.0949	1/2:250:0,125,125:0:0:125,125:4425,4304:-664.872,-316.573,-278.944,-348.628,0,-310.999	1/2:42:0,25,17:0:0:25,17:882,495:-103.322,-35.2058,-27.6801,-68.4076,0,-63.2901	1/2:102:0,55,47:0:0:55,47:1909,1328:-232.906,-92.9061,-76.3495,-140.282,0,-126.133	1/1:1:0,1,0:0:0:1,0:36,0:-3.3876,-0.30103,0,-3.3876,-0.30103,-3.3876	1/2:44:0,23,21:0:0:23,21:818,622:-106.531,-44.4063,-37.4827,-62.4238,0,-56.1021	1/2:73:0,37,35:0:0:37,35:1318,1078:-177.364,-77.0455,-65.9073,-100.382,0,-89.8462	1/1:52:0,50,2:0:0:50,2:1721,72:-146.369,-15.0515,0,-140.515,-8.8399,-139.913	1/1:82:0,82,0:0:0:82,0:2882,0:-248.569,-24.6845,0,-248.569,-24.6845,-248.569	1/2:85:0,41,43:0:0:41,43:1438,1372:-210.113,-99.1853,-86.843,-110.961,0,-98.0172	1/2:21:0,10,11:0:0:10,11:350,378:-55.9894,-28.3254,-25.3151,-27.993,0,-24.6817	1/1:43:0,43,0:0:0:43,0:1528,0:-128.383,-12.9443,0,-128.383,-12.9443,-128.383	1/2:45:0,27,18:0:0:27,18:944,586:-116.801,-42.7422,-34.6144,-74.3713,0,-68.9527	1/1:37:0,37,0:0:0:37,0:1297,0:-112.671,-11.1381,0,-112.671,-11.1381,-112.671	1/2:57:0,26,31:0:0:26,31:923,998:-145.219,-72.3868,-64.56,-73.1529,0,-63.8209	1/2:63:0,22,41:0:0:22,41:763,1393:-161.148,-101.904,-95.281,-59.5687,0,-47.2265	.:.:.:.:.:.:.:.	1/2:56:0,30,26:0:0:30,26:1047,739:-129.45,-51.9014,-42.8705,-77.8338,0,-70.007	1/1:11:0,11,0:0:0:11,0:391,0:-34.2051,-3.31133,0,-34.2051,-3.31133,-34.2051	1/1:8:0,8,0:0:0:8,0:278,0:-23.8544,-2.40824,0,-23.8544,-2.40824,-23.8544	1/1:41:0,41,0:0:0:41,0:1427,0:-123.93,-12.3422,0,-123.93,-12.3422,-123.93	1/1:13:0,13,0:0:0:13,0:444,0:-38.7005,-3.91339,0,-38.7005,-3.91339,-38.7005	1/1:1:0,1,0:0:0:1,0:36,0:-3.5027,-0.30103,0,-3.5027,-0.30103,-3.5027	1/2:11:0,7,4:0:0:7,4:247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chr01	33728862	.	T	C	24055.4	PASS	AB=0.493644;ABP=4.00402;AC=43;AF=0.231183;AN=186;AO=1427;CIGAR=1X;DP=6047;DPB=6047;DPRA=1.11626;EPP=94.3506;EPPR=32.1581;GTI=1;LEN=1;MEANALT=1;MQM=30.9516;MQMR=39.0825;NS=93;NUMALT=1;ODDS=2.67104;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50785;QR=165538;RO=4619;RPL=1427;RPP=3101.7;RPPR=10033;RPR=0;RUN=1;SAF=836;SAP=94.3506;SAR=591;SRF=2434;SRP=32.1581;SRR=2185;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:6,10:6:216:10:352:-19.2949,0,-12.6389	0/1:61:33,28:33:1180:28:983:-51.7581,0,-80.4849	0/0:115:114,1:114:4050:1:36:0,-31.7157,-335.195	0/0:45:44,1:44:1580:1:36:0,-10.4918,-134.644	0/1:28:18,10:18:644:10:360:-18.6769,0,-45.8487	0/1:24:12,12:12:432:12:432:-21.955,0,-28.0158	0/1:53:30,23:30:1068:23:805:-46.9611,0,-75.2945	0/0:55:55,0:55:1961:0:0:0,-16.5566,-161.879	0/1:51:30,21:30:1072:21:744:-37.2083,0,-72.8194	0/1:37:16,21:16:576:21:744:-45.7908,0,-38.9847	0/0:99:99,0:99:3540:0:0:0,-29.802,-303.577	0/0:125:125,0:125:4484:0:0:0,-37.6287,-374.289	0/0:130:130,0:130:4668:0:0:0,-39.1339,-387.148	0/1:161:75,86:75:2696:86:3076:-176.842,0,-179.89	0/0:106:106,0:106:3812:0:0:0,-31.9092,-326.213	0/0:116:115,0:115:4124:0:0:0,-34.6184,-351.575	0/0:157:157,0:157:5631:0:0:0,-47.2617,-469.527	0/0:108:108,0:108:3871:0:0:0,-32.5112,-319.664	0/1:154:81,73:81:2908:73:2599:-132.871,0,-192.606	0/1:54:29,25:29:1044:25:879:-52.1144,0,-74.0928	0/1:41:24,17:24:860:17:608:-33.5944,0,-60.7158	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.3842	0/0:16:16,0:16:576:0:0:0,-4.81648,-49.0839	0/0:49:47,2:47:1692:2:72:0,-9.23522,-139.107	0/0:37:37,0:37:1324:0:0:0,-11.1381,-112.403	0/0:77:77,0:77:2755:0:0:0,-23.1793,-240.444	0/0:70:69,1:69:2472:1:36:0,-18.1693,-205.778	0/0:64:64,0:64:2292:0:0:0,-19.2659,-194.632	0/0:67:67,0:67:2404:0:0:0,-20.169,-209.881	0/0:28:28,0:28:985:0:0:0,-8.42884,-83.3244	0/0:46:46,0:46:1643:0:0:0,-13.8474,-142.834	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.4478	0/1:4:1,3:1:36:3:104:-6.95791,0,-2.18348	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.17646	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.333	0/0:7:7,0:7:252:0:0:0,-2.10721,-21.2277	0/1:251:125,126:125:4475:126:4498:-286.99,0,-314.295	0/1:42:25,17:25:900:17:603:-30.9232,0,-64.6223	0/1:101:53,48:53:1891:48:1703:-88.0892,0,-123.199	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.3876	0/1:44:21,23:21:756:23:814:-45.9059,0,-51.9464	0/1:74:38,36:38:1364:36:1288:-73.6745,0,-92.2642	0/0:50:50,0:50:1800:0:0:0,-15.0515,-152.532	0/0:81:81,0:81:2908:0:0:0,-24.3834,-249.864	0/1:83:41,42:41:1476:42:1500:-89.935,0,-101.524	0/1:21:10,11:10:360:11:396:-26.1623,0,-25.0024	0/0:43:43,0:43:1544:0:0:0,-12.9443,-128.77	0/1:44:27,17:27:972:17:612:-33.9884,0,-71.346	0/0:35:35,0:35:1251:0:0:0,-10.536,-108.57	0/1:58:26,32:26:932:32:1148:-71.5308,0,-64.1822	0/1:63:23,40:23:820:40:1436:-96.3131,0,-52.0966	.:.:.:.:.:.:.:.	0/1:56:30,26:30:1046:26:932:-48.0935,0,-70.3394	0/0:11:11,0:11:396:0:0:0,-3.31133,-34.6065	0/0:8:8,0:8:284:0:0:0,-2.40824,-24.1056	0/0:41:41,0:41:1463:0:0:0,-12.3422,-126.518	0/0:13:13,0:13:468:0:0:0,-3.91339,-40.4046	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.5027	0/1:10:6,4:6:216:4:144:-8.76385,0,-16.2965	0/0:29:29,0:29:1040:0:0:0,-8.72987,-88.7905	0/0:156:156,0:156:5612:0:0:0,-46.9607,-482.754	0/1:6:3,3:3:108:3:108:-6.60487,0,-7.99056	0/0:27:27,0:27:968:0:0:0,-8.12781,-84.6456	0/1:77:37,40:37:1328:40:1436:-85.466,0,-91.8172	0/0:32:32,0:32:1143:0:0:0,-9.63296,-96.5358	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.4872	0/0:42:42,0:42:1504:0:0:0,-12.6433,-129.443	1/1:25:2,23:2:68:23:820:-57.4907,-1.2355,0	0/0:86:85,1:85:3040:1:36:0,-22.9858,-254.299	0/1:52:33,19:33:1180:19:680:-31.5822,0,-83.7144	0/0:184:184,0:184:6572:0:0:0,-55.3895,-572.816	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.8431	0/1:24:14,10:14:504:10:341:-17.395,0,-35.2499	0/1:32:19,13:19:680:13:456:-22.8186,0,-46.5779	0/0:69:69,0:69:2468:0:0:0,-20.7711,-209.468	0/1:52:21,31:21:756:31:1094:-68.2714,0,-50.2606	0/1:55:29,26:29:1044:26:923:-49.0145,0,-69.4222	0/1:58:28,30:28:1004:30:1061:-57.1933,0,-65.8673	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.1876	0/1:66:35,31:35:1256:31:1108:-62.6944,0,-86.1373	0/1:48:26,22:26:936:22:784:-40.968,0,-62.2983	0/1:69:41,28:41:1468:28:1000:-55.8736,0,-105.808	0/1:143:68,75:68:2432:75:2679:-158.856,0,-166.498	0/0:121:121,0:121:4339:0:0:0,-36.4246,-369.078	0/0:169:169,0:169:6068:0:0:0,-50.8741,-521.974	0/1:201:110,91:110:3943:91:3211:-189.434,0,-275.766	0/1:57:28,29:28:1008:29:1044:-56.3356,0,-65.9632	0/0:120:120,0:120:4308:0:0:0,-36.1236,-355.628	0/0:110:110,0:110:3952:0:0:0,-33.1133,-326.841	0/1:139:62,77:62:2223:77:2728:-156.36,0,-144.676	0/1:133:71,62:71:2532:62:2216:-123.188,0,-175.008	0/1:89:29,60:29:1040:60:2120:-136.98,0,-64.2632	0/0:30:30,0:30:1076:0:0:0,-9.0309,-90.3048	0/0:178:178,0:178:6400:0:0:0,-53.5833,-551.405
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chr01	33774701	.	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chr01	33774723	.	G	T	138332	PASS	AB=0.483221;ABP=13.2118;AC=143;AF=0.768817;AN=186;AO=6742;CIGAR=1X;DP=8918;DPB=8918;DPRA=0;EPP=14643.1;EPPR=4706.42;GTI=1;LEN=1;MEANALT=1.06452;MQM=44.7348;MQMR=53.8968;NS=93;NUMALT=1;ODDS=0.241203;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240493;QR=77408;RO=2170;RPL=6742;RPP=14643.1;RPPR=4706.42;RPR=0;RUN=1;SAF=6742;SAP=14643.1;SAR=0;SRF=2170;SRP=4715.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:29,15:29:1021:15:536:-34.6898,0,-78.7408	0/1:53:24,29:24:856:29:1014:-74.6621,0,-61.1923	1/1:120:1,119:1:36:119:4226:-371.046,-32.5344,0	1/1:296:0,296:0:0:296:10564:-935.353,-89.1049,0	0/1:41:30,11:30:1076:11:396:-22.6939,0,-84.6427	0/1:49:32,17:32:1144:17:599:-38.7263,0,-88.0427	0/1:101:64,37:64:2296:37:1316:-86.7904,0,-176.187	1/1:102:1,101:1:36:101:3590:-313.838,-27.1068,0	0/1:79:43,35:43:1544:35:1246:-87.1093,0,-114.892	0/1:52:23,29:23:824:29:1040:-75.6339,0,-58.7772	1/1:74:0,74:0:0:74:2642:-233.419,-22.2762,0	1/1:133:0,133:0:0:133:4752:-420.629,-40.037,0	1/1:105:0,105:0:0:105:3742:-332.411,-31.6082,0	0/1:79:45,34:45:1599:34:1216:-84.5056,0,-120.203	1/1:82:0,82:0:0:82:2936:-258.41,-24.6845,0	1/1:75:0,75:0:0:75:2673:-236.627,-22.5773,0	1/1:41:0,40:0:0:40:1438:-127.313,-12.0412,0	1/1:41:0,41:0:0:41:1456:-129.575,-12.3422,0	0/1:33:17,16:17:608:16:576:-41.666,0,-44.9918	0/1:193:88,105:88:3143:105:3739:-270.925,0,-224.291	0/1:158:84,74:84:2992:74:2593:-181.492,0,-221.418	1/1:104:0,104:0:0:104:3716:-327.71,-31.3071,0	1/1:106:2,104:2:72:104:3728:-321.969,-25.0774,0	1/1:60:4,56:4:144:56:1996:-163.937,-4.89534,0	1/1:67:0,67:0:0:67:2400:-211.985,-20.169,0	1/1:226:0,226:0:0:226:8054:-708.273,-68.0328,0	1/1:212:0,212:0:0:212:7608:-672.724,-63.8184,0	1/1:37:0,37:0:0:37:1316:-117.185,-11.1381,0	1/1:320:0,320:0:0:320:11471:-1010.56,-96.3296,0	1/1:127:0,127:0:0:127:4526:-400.829,-38.2308,0	1/1:133:2,131:2:68:131:4659:-406.156,-33.5827,0	1/1:5:0,5:0:0:5:180:-16.3325,-1.50515,0	0/1:10:1,9:1:32:9:324:-24.2873,0,-0.18697	0/1:10:6,4:6:212:4:140:-9.41001,0,-16.3697	1/1:1:0,1:0:0:1:36:-3.12364,-0.30103,0	1/1:7:0,7:0:0:7:252:-22.5809,-2.10721,0	1/1:233:0,232:0:0:232:8269:-727.979,-69.839,0	0/1:151:87,64:87:3119:64:2304:-159.158,0,-234.668	0/1:48:24,24:24:851:24:864:-62.8389,0,-61.6135	.:.:.:.:.:.:.:.	0/1:131:66,65:66:2368:65:2311:-165.625,0,-173.542	0/1:30:13,17:13:464:17:612:-45.6567,0,-32.8797	1/1:141:0,141:0:0:141:5027:-443.908,-42.4452,0	1/1:77:0,77:0:0:77:2735:-242.741,-23.1793,0	0/1:77:41,36:41:1418:36:1262:-88.6768,0,-104.537	0/1:109:69,40:69:2418:40:1424:-93.6431,0,-184.453	1/1:56:0,55:0:0:55:1945:-171.905,-16.5567,0	0/1:200:77,123:77:2743:123:4361:-325.913,0,-186.447	1/1:81:0,81:0:0:81:2912:-257.763,-24.3834,0	0/1:141:69,72:69:2476:72:2588:-187.332,0,-180.254	0/1:80:42,38:42:1499:38:1360:-95.6781,0,-110.828	1/1:7:0,7:0:0:7:252:-22.7105,-2.10721,0	0/1:158:71,87:71:2518:87:3122:-229.971,0,-178.722	1/1:93:2,91:2:68:91:3259:-280.681,-21.5405,0	1/1:4:0,4:0:0:4:144:-13.1669,-1.20412,0	1/1:175:0,175:0:0:175:6233:-551.523,-52.6803,0	1/1:41:0,41:0:0:41:1464:-129.812,-12.3422,0	1/1:8:0,8:0:0:8:288:-25.3743,-2.40824,0	0/1:7:4,3:4:144:3:108:-7.79393,0,-11.2027	1/1:61:1,60:1:36:60:2139:-185.656,-14.7697,0	1/1:128:2,126:2:72:126:4479:-390.17,-31.7,0	0/1:13:6,6:6:216:6:216:-15.5535,0,-15.81	1/1:176:0,176:0:0:176:6274:-552.858,-52.9813,0	0/1:198:97,101:97:3458:101:3606:-258.781,0,-251.383	1/1:32:0,32:0:0:32:1148:-101.048,-9.63296,0	1/1:66:0,66:0:0:66:2347:-208.236,-19.868,0	1/1:100:1,99:1:36:99:3516:-307.372,-26.5073,0	0/1:170:113,57:113:4018:57:2044:-130.552,0,-309.818	1/1:54:0,54:0:0:54:1904:-167.805,-16.2556,0	0/1:68:41,27:41:1472:27:968:-65.4748,0,-111.621	1/1:46:0,46:0:0:46:1614:-143.212,-13.8474,0	1/1:27:0,27:0:0:27:959:-85.427,-8.12781,0	0/1:100:54,46:54:1944:46:1644:-116.22,0,-144.698	0/1:92:45,47:45:1603:47:1683:-122.035,0,-116.323	1/1:184:0,183:0:0:183:6515:-575.099,-55.0885,0	0/1:204:101,103:101:3599:103:3674:-265.087,0,-261.61	0/1:100:57,43:57:2023:43:1510:-104.211,0,-150.661	0/1:114:58,56:58:2065:56:2000:-143.093,0,-150.876	1/1:12:0,12:0:0:12:423:-38.0041,-3.61236,0	0/1:145:74,71:74:2664:71:2556:-182.106,0,-195.856	0/1:163:80,83:80:2856:83:2984:-216.386,0,-207.167	0/1:169:95,74:95:3408:74:2631:-181.77,0,-255.119	0/1:62:30,32:30:1072:32:1131:-82.1294,0,-77.9452	1/1:65:0,65:0:0:65:2323:-205.072,-19.567,0	0/1:65:29,36:29:1032:36:1296:-95.7871,0,-73.5155	0/1:164:69,95:69:2458:95:3395:-250.205,0,-171.743	0/1:20:10,10:10:356:10:347:-25.2348,0,-26.1987	1/1:91:0,91:0:0:91:3246:-288.383,-27.3937,0	1/1:86:0,86:0:0:86:3043:-269.678,-25.8886,0	0/1:67:32,35:32:1148:35:1260:-91.7339,0,-83.1695	0/1:150:70,80:70:2503:80:2851:-207.822,0,-180.012	0/1:74:44,30:44:1580:30:1063:-72.4907,0,-120.011	1/1:136:0,136:0:0:136:4880:-432.952,-40.9401,0	1/1:92:0,92:0:0:92:3284:-291.558,-27.6948,0
chr01	33774728	.	TAAC	GAAC,CAAA	187409	PASS	AB=0.472582,0.523653;ABP=30.755,23.6574;AC=143,43;AF=0.768817,0.231183;AN=186;AO=6689,2239;CIGAR=1X3M,1X2M1X;DP=8965;DPB=8966.25;DPRA=0,1.05795;EPP=14528,4856.26;EPPR=5.18177;GTI=1;LEN=1,4;MEANALT=1.91398,2.33333;MQM=44.7639,53.7459;MQMR=60;NS=93;NUMALT=2;ODDS=0.794902;PAIRED=0,0;PAIREDR=0;PAO=4,2;PQA=136,72;PQR=0;PRO=0;QA=237999,78874;QR=25;RO=1;RPL=6689,2238;RPP=14528,4856.26;RPPR=5.18177;RPR=0,1;RUN=1,1;SAF=6689,2239;SAP=14528,4864.94;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,12,30:0:0:12,30:428,1046:-119.139,-84.7331,-81.1208,-34.3977,0,-25.3668	1/2:57:0,30,27:0:0:30,27:1073,950:-163.309,-77.0549,-68.024,-86.6052,0,-78.4774	1/1:120:0,118,1:0:0:118,1:4208,35:-373.334,-35.5215,0,-370.493,-32.6598,-370.192	1/1:293:0,291,0:0:0:291,0:10389,0:-920.437,-87.5997,0,-920.437,-87.5997,-920.437	1/2:40:0,11,29:0:0:11,29:392,1016:-113.771,-82.5366,-79.2253,-31.2245,0,-22.4947	1/2:49:0,17,32:0:0:17,32:603,1124:-139.994,-91.4368,-86.3193,-48.9078,0,-39.2748	1/2:103:0,37,66:0:0:37,66:1332,2337:-297.475,-190.438,-179.3,-107.391,0,-87.5234	1/1:99:0,98,0:0:0:98,0:3487,0:-309.169,-29.5009,0,-309.169,-29.5009,-309.169	1/2:80:0,35,45:0:0:35,45:1243,1601:-230.196,-130.144,-119.608,-100.404,0,-86.8574	1/2:55:0,30,25:0:0:30,25:1032,893:-155.045,-73.1075,-64.0766,-82.2857,0,-74.76	1/1:72:0,72,0:0:0:72,0:2575,0:-227.49,-21.6742,0,-227.49,-21.6742,-227.49	1/1:131:0,130,0:0:0:130,0:4569,0:-405.691,-39.1339,0,-405.691,-39.1339,-405.691	1/1:102:0,102,0:0:0:102,0:3635,0:-323.447,-30.7051,0,-323.447,-30.7051,-323.447	1/2:83:0,36,46:0:0:36,46:1271,1636:-235.132,-133.083,-122.246,-102.107,0,-88.26	1/1:83:0,83,0:0:0:83,0:2918,0:-258.249,-24.9855,0,-258.249,-24.9855,-258.249	1/1:71:0,71,0:0:0:71,0:2519,0:-223.475,-21.3731,0,-223.475,-21.3731,-223.475	1/1:40:0,40,0:0:0:40,0:1384,0:-123.08,-12.0412,0,-123.08,-12.0412,-123.08	1/1:40:0,40,0:0:0:40,0:1424,0:-126.833,-12.0412,0,-126.833,-12.0412,-126.833	1/2:34:0,18,16:0:0:18,16:620,574:-96.8428,-47.0501,-41.6315,-50.1426,0,-45.3261	1/2:196:0,103,91:0:0:103,91:3665,3212:-553.394,-260.91,-229.904,-292.531,0,-265.137	1/2:162:0,73,89:0:0:73,89:2588,3142:-462.184,-255.677,-233.702,-206.857,0,-180.065	1/1:104:0,104,0:0:0:104,0:3717,0:-328.013,-31.3071,0,-328.013,-31.3071,-328.013	1/1:105:0,103,2:0:0:103,2:3671,72:-324.36,-31.0061,0,-318.489,-24.7764,-317.887	1/1:57:0,53,4:0:0:53,4:1900,140:-168.368,-15.9546,0,-157.049,-4.28672,-155.844	1/1:69:0,69,0:0:0:69,0:2446,0:-216.806,-20.7711,0,-216.806,-20.7711,-216.806	1/1:222:0,219,0:0:0:219,0:7827,0:-691.124,-65.9256,0,-691.124,-65.9256,-691.124	1/1:210:0,210,0:0:0:210,0:7484,0:-663.893,-63.2163,0,-663.893,-63.2163,-663.893	1/1:38:0,38,0:0:0:38,0:1348,0:-120.045,-11.4391,0,-120.045,-11.4391,-120.045	1/1:320:0,318,0:0:0:318,0:11369,0:-1003.9,-95.7275,0,-1003.9,-95.7275,-1003.9	1/1:126:0,126,0:0:0:126,0:4493,0:-398.467,-37.9298,0,-398.467,-37.9298,-398.467	1/1:132:0,129,2:0:0:129,2:4587,72:-406.52,-38.8329,0,-400.65,-32.9,-400.048	1/1:6:0,6,0:0:0:6,0:216,0:-19.5261,-1.80618,0,-19.5261,-1.80618,-19.5261	1/2:10:0,9,1:0:0:9,1:308,36:-26.958,-3.29214,-0.582873,-24.0218,0,-23.7208	1/2:10:0,4,6:0:0:4,6:141,200:-27.603,-16.4886,-15.2844,-11.4528,0,-9.64659	1/1:1:0,1,0:0:0:1,0:33,0:-2.99908,-0.30103,0,-2.99908,-0.30103,-2.99908	1/1:6:0,6,0:0:0:6,0:216,0:-19.5724,-1.80618,0,-19.5724,-1.80618,-19.5724	1/1:236:0,235,0:0:0:235,0:8301,0:-733.204,-70.7421,0,-733.204,-70.7421,-733.204	1/2:153:0,66,87:0:0:66,87:2366,3085:-440.641,-250.9,-231.032,-190.095,0,-163.905	1/2:49:0,25,24:0:0:25,24:896,860:-141.977,-69.7054,-62.1797,-72.6258,0,-65.4011	.:.:.:.:.:.:.:.	1/2:134:0,65,69:0:0:65,69:2328,2428:-384.221,-197.696,-178.129,-186.877,0,-166.106	1/2:30:0,17,13:0:0:17,13:612,466:-87.3914,-38.1773,-33.0598,-49.5701,0,-45.6567	1/1:144:0,140,0:0:0:140,0:4962,0:-439.965,-42.1442,0,-439.965,-42.1442,-439.965	1/1:79:0,78,0:0:0:78,0:2776,0:-245.943,-23.4803,0,-245.943,-23.4803,-245.943	1/2:82:0,38,44:0:0:38,44:1349,1521:-231.681,-123.721,-112.282,-108.307,0,-95.062	1/2:112:0,40,71:0:0:40,71:1419,2485:-315.293,-201.724,-189.683,-113.666,0,-92.2925	1/1:53:0,52,0:0:0:52,0:1865,0:-165.793,-15.6536,0,-165.793,-15.6536,-165.793	1/2:205:0,124,81:0:0:124,81:4403,2866:-585.813,-233.306,-195.978,-352.858,0,-328.475	1/1:83:0,82,0:0:0:82,0:2930,0:-259.616,-24.6845,0,-259.616,-24.6845,-259.616	1/2:144:0,72,71:0:0:72,71:2588,2500:-411.231,-203.288,-181.614,-207.946,0,-186.573	1/2:84:0,40,44:0:0:40,44:1409,1548:-238.096,-125.916,-113.875,-112.528,0,-99.2827	1/1:7:0,7,0:0:0:7,0:252,0:-22.7105,-2.10721,0,-22.7105,-2.10721,-22.7105	1/2:160:0,86,73:0:0:86,73:3090,2560:-456.202,-207.617,-181.729,-248.577,0,-226.602	1/1:94:0,93,1:0:0:93,1:3324,35:-293.166,-27.9958,0,-290.32,-24.8003,-290.019	1/1:5:0,5,0:0:0:5,0:180,0:-16.3696,-1.50515,0,-16.3696,-1.50515,-16.3696	1/1:174:0,173,0:0:0:173,0:6153,0:-545.638,-52.0782,0,-545.638,-52.0782,-545.638	1/1:43:0,43,0:0:0:43,0:1534,0:-135.899,-12.9443,0,-135.899,-12.9443,-135.899	1/1:8:0,8,0:0:0:8,0:284,0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chr01	33774744	.	TTC	CTT,TTT	181432	PASS	AB=0.479325,0.517823;ABP=18.6338,14.6211;AC=143,43;AF=0.768817,0.231183;AN=186;AO=6725,2192;CIGAR=1X1M1X,2M1X;DP=8942;DPB=8946.33;DPRA=0,1.04693;EPP=14606.2,4762.88;EPPR=7.35324;GTI=2;LEN=3,1;MEANALT=1.77419,2.19608;MQM=44.5496,53.8011;MQMR=60;NS=93;NUMALT=2;ODDS=0.465526;PAIRED=0,0;PAIREDR=0;PAO=9,2;PQA=316,0;PQR=0;PRO=2;QA=232280,77635;QR=72;RO=2;RPL=6725,2189;RPP=14606.2,4736.86;RPPR=7.35324;RPR=0,3;RUN=1,1;SAF=6725,2189;SAP=14606.2,4736.86;SAR=0,3;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,14,26:0:0:14,26:462,910:-111.089,-74.1007,-69.8862,-37.3231,0,-29.4963	1/2:53:0,27,26:0:0:27,26:943,927:-150.933,-75.4677,-67.3399,-75.8144,0,-67.9876	1/1:118:0,116,1:0:0:116,1:3997,36:-354.063,-34.9195,0,-351.134,-31.986,-350.833	1/1:291:0,289,0:0:0:289,0:10069,0:-892.27,-86.9977,0,-892.27,-86.9977,-892.27	1/2:42:0,12,30:0:0:12,30:408,1048:-117.697,-85.4411,-81.8288,-32.5928,0,-23.5619	1/2:48:0,17,31:0:0:17,31:583,1104:-136.563,-89.918,-84.8005,-46.989,0,-37.657	1/2:101:0,37,64:0:0:37,64:1279,2233:-284.24,-181.669,-170.53,-102.915,0,-83.6495	1/1:103:0,102,0:0:0:102,0:3528,0:-311.824,-30.7051,0,-311.824,-30.7051,-311.824	1/2:80:0,36,43:0:0:36,43:1233,1536:-222.938,-124.527,-113.69,-98.399,0,-85.4547	1/2:55:0,30,25:0:0:30,25:995,870:-149.69,-71.0385,-62.0076,-78.9891,0,-71.4634	1/1:72:0,72,0:0:0:72,0:2525,0:-223.168,-21.6742,0,-223.168,-21.6742,-223.168	1/1:127:0,127,0:0:0:127,0:4352,0:-386.033,-38.2308,0,-386.033,-38.2308,-386.033	1/1:105:0,105,0:0:0:105,0:3592,0:-319.11,-31.6082,0,-319.11,-31.6082,-319.11	1/2:83:0,37,46:0:0:37,46:1248,1630:-232.247,-132.825,-121.687,-99.7641,0,-85.9167	1/1:82:0,82,0:0:0:82,0:2825,0:-249.123,-24.6845,0,-249.123,-24.6845,-249.123	1/1:74:0,73,0:0:0:73,0:2520,0:-223.082,-21.9752,0,-223.082,-21.9752,-223.082	1/1:39:0,39,0:0:0:39,0:1319,0:-117.331,-11.7402,0,-117.331,-11.7402,-117.331	1/1:42:0,42,0:0:0:42,0:1459,0:-129.939,-12.6433,0,-129.939,-12.6433,-129.939	1/2:33:0,17,16:0:0:17,16:593,564:-93.8502,-46.1574,-41.0399,-48.0413,0,-43.2249	1/2:198:0,106,91:0:0:106,91:3641,3218:-549.955,-261.62,-229.711,-288.428,0,-261.035	1/2:165:0,76,88:0:0:76,88:2568,3132:-458.734,-254.821,-231.943,-204.004,0,-177.513	1/1:105:0,105,0:0:0:105,0:3607,0:-318.744,-31.6082,0,-318.744,-31.6082,-318.744	1/1:103:0,101,2:0:0:101,2:3526,72:-311.205,-30.404,0,-305.335,-24.1743,-304.733	1/1:59:0,56,3:0:0:56,3:1907,108:-169.074,-16.8577,0,-160.4,-7.82932,-159.497	1/1:67:0,66,0:0:0:66,0:2289,0:-202.197,-19.868,0,-202.197,-19.868,-202.197	1/1:224:0,223,0:0:0:223,0:7749,0:-683.256,-67.1297,0,-683.256,-67.1297,-683.256	1/1:212:0,212,0:0:0:212,0:7384,0:-654.915,-63.8184,0,-654.915,-63.8184,-654.915	1/1:38:0,38,0:0:0:38,0:1310,0:-116.818,-11.4391,0,-116.818,-11.4391,-116.818	1/1:322:0,321,0:0:0:321,0:11079,0:-977.472,-96.6306,0,-977.472,-96.6306,-977.472	1/1:127:0,125,0:0:0:125,0:4300,0:-380.862,-37.6288,0,-380.862,-37.6288,-380.862	1/1:133:0,131,2:0:0:131,2:4543,72:-402.357,-39.4349,0,-396.486,-33.2052,-395.884	1/1:6:0,6,0:0:0:6,0:213,0:-19.2696,-1.80618,0,-19.2696,-1.80618,-19.2696	1/2:11:0,10,1:0:0:10,1:353,36:-29.749,-3.29214,-0.281843,-26.8133,0,-26.5123	1/2:9:0,4,5:0:0:4,5:142,180:-26.0507,-15.0053,-13.8012,-11.394,0,-9.8889	1/1:1:0,1,0:0:0:1,0:36,0:-3.12364,-0.30103,0,-3.12364,-0.30103,-3.12364	1/1:7:0,7,0:0:0:7,0:239,0:-21.6029,-2.10721,0,-21.6029,-2.10721,-21.6029	1/1:233:0,233,0:0:0:233,0:8102,0:-714.848,-70.14,0,-714.848,-70.14,-714.848	1/2:150:0,65,85:0:0:65,85:2221,3034:-424.636,-246.949,-227.382,-178.032,0,-152.444	1/2:46:0,23,23:0:0:23,23:807,828:-132.028,-67.0664,-60.1427,-65.313,0,-58.3893	.:.:.:.:.:.:.:.	1/2:132:0,64,68:0:0:64,68:2195,2432:-373.673,-198.258,-178.992,-175.762,0,-155.292	1/2:29:0,16,13:0:0:16,13:576,460:-83.9236,-37.64,-32.8235,-46.637,0,-42.7236	1/1:141:0,141,0:0:0:141,0:4827,0:-426.711,-42.4452,0,-426.711,-42.4452,-426.711	1/1:78:0,78,0:0:0:78,0:2718,0:-241.133,-23.4803,0,-241.133,-23.4803,-241.133	1/2:82:0,37,44:0:0:37,44:1265,1529:-224.773,-124.016,-112.878,-100.743,0,-87.4981	1/2:109:0,39,70:0:0:39,70:1366,2472:-310.279,-201.057,-189.317,-109.569,0,-88.4968	1/1:55:0,55,0:0:0:55,0:1904,0:-168.494,-16.5567,0,-168.494,-16.5567,-168.494	1/2:201:0,124,77:0:0:124,77:4195,2737:-557.686,-223.017,-185.689,-335.016,0,-311.837	1/1:82:0,82,0:0:0:82,0:2803,0:-248.886,-24.6845,0,-248.886,-24.6845,-248.886	1/2:136:0,68,68:0:0:68,68:2380,2409:-386.555,-195.842,-175.372,-190.704,0,-170.234	1/2:86:0,41,44:0:0:41,44:1422,1559:-239.665,-126.538,-114.196,-113.192,0,-99.9464	1/1:7:0,7,0:0:0:7,0:248,0:-22.3782,-2.10721,0,-22.3782,-2.10721,-22.3782	1/2:159:0,86,73:0:0:86,73:2998,2587:-450.747,-210.354,-184.466,-240.741,0,-218.766	1/1:94:0,93,1:0:0:93,1:3279,36:-288.896,-27.9958,0,-285.961,-24.7011,-285.66	1/1:6:0,6,0:0:0:6,0:206,0:-18.701,-1.80618,0,-18.701,-1.80618,-18.701	1/1:175:0,175,0:0:0:175,0:6006,0:-532.387,-52.6803,0,-532.387,-52.6803,-532.387	1/1:40:0,40,0:0:0:40,0:1361,0:-120.956,-12.0412,0,-120.956,-12.0412,-120.956	1/1:8:0,8,0:0:0:8,0:285,0:-2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chr01	33774812	.	A	G	144457	PASS	AB=0.517298;ABP=12.4761;AC=145;AF=0.771277;AN=188;AO=6833;CIGAR=1X;DP=8604;DPB=8604;DPRA=0;EPP=14832;EPPR=3818.33;GTI=2;LEN=1;MEANALT=1.02128;MQM=51.5217;MQMR=59.6535;NS=94;NUMALT=1;ODDS=1.46232;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243200;QR=63205;RO=1769;RPL=6833;RPP=14840.7;RPPR=3818.33;RPR=0;RUN=1;SAF=1;SAP=14832;SAR=6832;SRF=0;SRP=3844.34;SRR=1769;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:21,22:21:756:22:788:-57.6388,0,-55.3876	0/1:91:28,63:28:1004:63:2256:-174.797,0,-63.1938	1/1:96:0,96:0:0:96:3423:-304.702,-28.8989,0	1/1:269:1,268:1:36:268:9542:-851.162,-77.3788,0	0/1:40:18,22:18:640:22:788:-58.6574,0,-45.8881	0/1:9:5,4:5:180:4:140:-10.1836,0,-13.8428	0/1:37:16,21:16:576:21:756:-56.9471,0,-41.0369	1/1:146:1,145:1:36:145:5146:-456.009,-40.3521,0	0/1:84:54,30:54:1913:30:1076:-70.5015,0,-147.141	0/1:77:41,36:41:1460:36:1274:-91.4227,0,-108.511	1/1:52:0,52:0:0:52:1851:-166.361,-15.6536,0	1/1:104:0,104:0:0:104:3702:-330.539,-31.3071,0	1/1:82:0,82:0:0:82:2948:-263.519,-24.6845,0	0/1:56:23,33:23:824:33:1176:-88.6122,0,-57.615	1/1:70:0,70:0:0:70:2479:-222.527,-21.0721,0	1/1:73:0,73:0:0:73:2603:-232.965,-21.9752,0	1/1:35:0,35:0:0:35:1260:-113.093,-10.5361,0	1/1:32:0,32:0:0:32:1140:-102.381,-9.63296,0	0/1:34:15,19:15:540:19:675:-50.5218,0,-38.7015	0/1:180:71,109:71:2525:109:3865:-293.075,0,-173.302	0/1:154:71,82:71:2541:82:2911:-214.075,0,-182.5	1/1:99:0,99:0:0:99:3506:-315.236,-29.802,0	1/1:179:0,179:0:0:179:6347:-568.96,-53.8844,0	1/1:58:3,55:3:108:55:1967:-165.624,-7.38457,0	1/1:28:1,27:1:36:27:959:-82.7402,-4.83057,0	1/1:299:0,299:0:0:299:10624:-952.657,-90.008,0	1/1:219:0,218:0:0:218:7763:-695.177,-65.6245,0	1/1:31:0,31:0:0:31:1091:-98.1824,-9.33193,0	1/1:358:2,356:2:72:356:12676:-1130.95,-100.932,0	1/1:240:0,240:0:0:240:8519:-761.591,-72.2472,0	1/1:118:0,118:0:0:118:4193:-375.877,-35.5215,0	1/1:10:0,10:0:0:10:360:-32.637,-3.0103,0	0/1:9:2,7:2:72:7:248:-19.8846,0,-4.12745	0/1:4:3,1:3:108:1:36:-2.37465,0,-8.87105	1/1:19:0,19:0:0:19:672:-60.5029,-5.71957,0	1/1:7:0,7:0:0:7:243:-22.0982,-2.10721,0	1/1:190:0,190:0:0:190:6779:-608.964,-57.1957,0	0/1:144:78,66:78:2761:66:2342:-166.695,0,-205.092	0/1:41:22,19:22:788:19:680:-48.8619,0,-58.8327	1/1:3:0,3:0:0:3:108:-10.0422,-0.90309,0	0/1:126:71,55:71:2540:55:1958:-137.467,0,-190.9	0/1:18:10,8:10:360:8:288:-20.7628,0,-27.3258	1/1:53:0,53:0:0:53:1895:-170.272,-15.9546,0	1/1:65:0,65:0:0:65:2315:-207.599,-19.567,0	0/1:64:33,31:33:1184:31:1103:-80.1197,0,-87.59	0/1:98:50,48:50:1796:48:1707:-124.238,0,-132.407	1/1:115:0,115:0:0:115:4112:-367.722,-34.6185,0	0/1:185:83,102:83:2980:102:3611:-267.669,0,-212.701	1/1:86:0,86:0:0:86:3071:-275.766,-25.8886,0	0/1:123:51,72:51:1820:72:2580:-194.989,0,-127.042	0/1:92:56,36:56:1995:36:1276:-87.2294,0,-152.108	1/1:10:0,10:0:0:10:360:-32.6774,-3.0103,0	0/1:73:38,35:38:1356:35:1239:-88.3718,0,-100.348	1/1:70:0,70:0:0:70:2489:-223.511,-21.0721,0	1/1:13:0,13:0:0:13:468:-41.9353,-3.91339,0	1/1:167:0,167:0:0:167:5920:-530.623,-50.272,0	1/1:44:0,44:0:0:44:1576:-141.722,-13.2453,0	1/1:15:0,15:0:0:15:540:-48.8861,-4.51545,0	0/1:17:9,8:9:305:8:284:-20.7434,0,-22.6563	1/1:69:0,69:0:0:69:2472:-222.011,-20.7711,0	1/1:97:0,97:0:0:97:3472:-310.801,-29.1999,0	0/1:5:1,4:1:36:4:144:-11.7831,0,-2.09312	1/1:211:0,211:0:0:211:7507:-673.878,-63.5173,0	0/1:176:87,89:87:3108:89:3163:-231.066,0,-226.946	1/1:46:0,46:0:0:46:1641:-147.336,-13.8474,0	1/1:107:0,107:0:0:107:3799:-340.574,-32.2102,0	1/1:256:4,252:4:144:252:8950:-790.161,-64.1299,0	0/1:121:78,43:78:2788:43:1522:-100.283,0,-214.712	1/1:25:0,25:0:0:25:900:-80.8372,-7.52575,0	0/1:39:24,15:24:860:15:536:-36.5799,0,-65.9817	1/1:54:0,54:0:0:54:1920:-172.451,-16.2556,0	1/1:22:0,22:0:0:22:780:-70.3994,-6.62266,0	0/1:101:43,58:43:1540:58:2042:-152.682,0,-108.355	0/1:108:43,65:43:1544:65:2314:-174.301,0,-106.742	1/1:157:0,157:0:0:157:5594:-498.552,-47.2617,0	0/1:161:59,102:59:2097:102:3642:-278.366,0,-140.532	0/1:98:39,59:39:1381:59:2102:-158.247,0,-95.0424	0/1:116:58,58:58:2080:58:2068:-149.79,0,-152.516	1/1:14:0,14:0:0:14:504:-45.1486,-4.21442,0	0/1:143:57,86:57:2044:86:3079:-232.614,0,-141.173	0/1:38:18,20:18:648:20:711:-52.2378,0,-47.2127	0/1:238:133,105:133:4764:105:3739:-263.094,0,-357.253	0/1:72:29,43:29:1028:43:1518:-114.628,0,-71.1527	1/1:69:0,69:0:0:69:2464:-221.288,-20.7711,0	0/1:46:22,24:22:788:24:860:-63.7337,0,-57.3869	0/1:123:61,62:61:2188:62:2220:-162.599,0,-160.132	0/1:19:9,10:9:311:10:356:-26.4947,0,-22.6042	1/1:78:0,78:0:0:78:2778:-247.885,-23.4803,0	1/1:78:0,78:0:0:78:2778:-248.953,-23.4803,0	0/1:35:19,16:19:684:16:557:-39.585,0,-51.3543	0/1:127:63,64:63:2252:64:2254:-163.816,0,-164.681	0/1:77:45,32:45:1608:32:1152:-80.6008,0,-121.828	1/1:104:0,104:0:0:104:3691:-331.633,-31.3071,0	1/1:120:0,120:0:0:120:4267:-382.174,-36.1236,0
chr01	33805213	.	C	T	155941	PASS	AB=0.344837;ABP=1523.92;AC=143;AF=0.760638;AN=188;AO=7843;CIGAR=1X;DP=12628;DPB=12628;DPRA=0;EPP=17033.9;EPPR=9999.8;GTI=9;LEN=1;MEANALT=1.03191;MQM=59.8828;MQMR=52.3122;NS=94;NUMALT=1;ODDS=0.355707;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279255;QR=169771;RO=4782;RPL=3;RPP=17007.8;RPPR=5.91649;RPR=7840;RUN=1;SAF=3;SAP=17007.8;SAR=7840;SRF=2476;SRP=16.1336;SRR=2306;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:27,27:27:944:27:956:-70.1001,0,-68.0054	0/1:242:149,93:149:5320:93:3300:-224.361,0,-399.814	1/1:356:0,356:0:0:356:12724:-1144.97,-107.167,0	1/1:241:0,241:0:0:241:8573:-771.551,-72.5482,0	0/1:124:74,50:74:2636:50:1756:-120.993,0,-198.719	0/1:56:43,13:43:1516:13:468:-25.602,0,-117.651	0/1:274:158,116:158:5610:116:4151:-291.062,0,-419.538	1/1:135:0,135:0:0:135:4832:-435.03,-40.6391,0	0/1:185:111,74:111:3952:74:2648:-180.42,0,-294.831	0/1:183:110,73:110:3908:73:2606:-179.653,0,-292.961	1/1:64:0,64:0:0:64:2268:-204.383,-19.2659,0	1/1:83:0,83:0:0:83:2984:-268.756,-24.9855,0	1/1:87:0,87:0:0:87:3112:-280.275,-26.1896,0	0/1:129:92,37:92:3222:37:1311:-79.458,0,-247.306	1/1:81:1,80:1:36:80:2855:-253.589,-20.7852,0	1/1:69:1,68:1:36:68:2417:-214.187,-17.1728,0	1/1:71:0,71:0:0:71:2512:-226.334,-21.3731,0	1/1:69:0,69:0:0:69:2464:-221.979,-20.7711,0	0/1:74:52,22:52:1856:22:784:-48.6077,0,-142.851	0/1:480:337,143:337:12003:143:5106:-315.148,0,-924.29	0/1:209:145,63:145:5097:63:2213:-136.415,0,-391.861	1/1:133:1,132:1:32:132:4682:-416.276,-36.8377,0	1/1:65:0,65:0:0:65:2312:-208.341,-19.567,0	1/1:102:5,97:5:176:97:3460:-295.52,-14.6116,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:336:0,336:0:0:336:11953:-1075.59,-101.146,0	1/1:292:1,291:1:32:291:10378:-930.767,-84.722,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:390:1,389:1:36:389:13822:-1240.17,-113.823,0	1/1:83:1,82:1:36:82:2885:-256.289,-21.3872,0	1/1:117:0,117:0:0:117:4162:-374.764,-35.2205,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:32:14,18:14:491:18:635:-47.844,0,-34.7527	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.2667	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:184:0,184:0:0:184:6535:-588.191,-55.3895,0	0/1:260:178,82:178:6306:82:2903:-183.239,0,-484.523	0/1:105:68,37:68:2420:37:1332:-88.5742,0,-183.24	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.3185	0/1:240:167,73:167:5937:73:2620:-163.8,0,-456.905	0/1:60:37,23:37:1320:23:824:-56.4215,0,-99.5315	1/1:163:0,163:0:0:163:5802:-522.298,-49.0679,0	1/1:77:0,77:0:0:77:2747:-247.416,-23.1793,0	0/1:119:85,34:85:2992:34:1211:-73.4729,0,-230.801	0/1:99:67,32:67:2396:32:1144:-73.4676,0,-184.3	1/1:125:0,125:0:0:125:4464:-401.931,-37.6288,0	0/1:267:159,108:159:5600:108:3841:-265.512,0,-421.181	1/1:78:0,78:0:0:78:2769:-249.452,-23.4803,0	0/1:298:202,96:202:7177:96:3427:-218.079,0,-552.443	0/1:260:175,85:175:6192:85:3011:-192.924,0,-477.159	1/1:20:0,20:0:0:20:715:-64.6773,-6.0206,0	0/1:264:185,79:185:6550:79:2832:-175.647,0,-501.144	1/1:40:0,40:0:0:40:1416:-127.737,-12.0412,0	1/1:13:0,13:0:0:13:456:-41.3732,-3.91339,0	1/1:169:0,169:0:0:169:6043:-543.966,-50.8741,0	1/1:50:0,50:0:0:50:1772:-159.763,-15.0515,0	1/1:25:0,25:0:0:25:880:-79.5177,-7.52575,0	0/1:21:13,8:13:450:8:279:-19.1259,0,-34.3404	1/1:58:0,58:0:0:58:2055:-185.199,-17.4597,0	1/1:97:1,96:1:36:96:3384:-300.847,-25.6331,0	0/1:34:18,16:18:644:16:572:-41.5784,0,-47.9535	1/1:243:0,243:0:0:243:8648:-778.23,-73.1503,0	0/1:252:149,103:149:5280:103:3692:-256.294,0,-394.872	1/1:71:0,71:0:0:71:2532:-228.13,-21.3731,0	1/1:119:0,119:0:0:119:4255:-383.129,-35.8226,0	1/1:176:5,171:5:176:171:6070:-530.27,-36.8542,0	0/1:156:133,23:133:4710:23:828:-27.8834,0,-373.183	0/1:29:3,26:3:108:26:915:-73.9132,0,-1.29886	0/1:107:72,35:72:2524:35:1248:-80.4147,0,-191.539	1/1:97:2,95:2:72:95:3370:-296.677,-22.3632,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:136:89,47:89:3173:47:1676:-110.187,0,-239.399	0/1:72:47,25:47:1684:25:896:-59.2862,0,-128.81	1/1:126:1,125:1:36:125:4425:-394.877,-34.3813,0	0/1:310:194,115:194:6903:115:4080:-274.097,0,-523.856	0/1:265:181,84:181:6432:84:2984:-189.003,0,-493.382	0/1:199:105,94:105:3740:94:3352:-241.993,0,-274.339	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:268:160,108:160:5686:108:3844:-265.457,0,-427.629	0/1:241:147,94:147:5232:94:3360:-230.069,0,-395.43	0/1:324:251,73:251:8965:73:2612:-137.794,0,-702.121	0/1:134:89,45:89:3153:45:1582:-102.331,0,-241.435	1/1:59:0,59:0:0:59:2111:-190.258,-17.7608,0	0/1:140:92,48:92:3258:48:1699:-111.047,0,-249.74	0/1:186:112,74:112:4003:74:2622:-180.236,0,-299.901	0/1:47:35,12:35:1232:12:424:-24.348,0,-95.0342	1/1:57:0,57:0:0:57:2044:-184.228,-17.1587,0	1/1:64:0,64:0:0:64:2280:-205.427,-19.2659,0	0/1:93:57,35:57:2027:35:1239:-83.7592,0,-152.499	0/1:125:86,39:86:3047:39:1400:-88.6613,0,-232.256	0/1:103:84,19:84:3011:19:680:-30.5231,0,-238.61	1/1:156:0,156:0:0:156:5533:-497.953,-46.9607,0	1/1:113:0,113:0:0:113:4039:-363.696,-34.0164,0
chr01	33805228	.	TGG	GGG,CGG	289493	PASS	AB=0.321818,0.67026;ABP=2126.41,1941.79;AC=143,45;AF=0.760638,0.239362;AN=188;AO=7672,5182;CIGAR=1X2M,1X2M;DP=12961;DPB=12961.7;DPRA=0,1.99719;EPP=16653.9,11255.6;EPPR=57.2971;GTI=10;LEN=1,1;MEANALT=2.29787,2.90909;MQM=59.8919,53.0318;MQMR=57.2;NS=94;NUMALT=2;ODDS=28042;PAIRED=0,0;PAIREDR=0;PAO=0.5,1;PQA=0,32;PQR=0;PRO=0;QA=263825,183694;QR=718;RO=25;RPL=0,2440;RPP=16662.5,41.2285;RPPR=28.1125;RPR=7672,2742;RUN=1,1;SAF=1,2440;SAP=16653.9,41.2285;SAR=7671,2742;SRF=4;SRP=28.1125;SRR=21;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:56:0,25,31:0:0:25,31:845,1087:-156.37,-87.8807,-80.355,-68.8314,0,-59.4995	1/2:264:0,97,165:0:0:97,165:3363,5866:-745.234,-472.165,-442.965,-273.111,0,-223.441	1/1:333:1,329,0:1:22:329,0:11349,0:-1019.01,-97.3933,0,-1019.31,-99.0389,-1020.99	1/1:233:0,231,0:0:0:231,0:7938,0:-714.123,-69.5379,0,-714.123,-69.5379,-714.123	1/2:128:0,50,77:0:0:50,77:1704,2707:-357.557,-219.315,-204.263,-138.353,0,-115.174	1/2:59:0,14,44:0:0:14,44:481,1580:-165.676,-126.622,-122.407,-39.0419,0,-25.7966	1/2:292:2,110,179:2:49:110,179:3781,6356:-818.242,-511.836,-482.529,-303.299,0,-253.221	1/1:134:1,132,0:1:28:132,0:4607,0:-411.954,-37.5572,0,-412.255,-39.736,-414.474	1/2:203:0,77,125:0:0:77,125:2569,4422:-563.326,-355.617,-332.437,-207.778,0,-170.149	1/2:191:0,68,121:0:0:68,121:2356,4294:-539.135,-347.659,-327.189,-191.498,0,-155.074	1/1:65:0,64,0:0:0:64,0:2192,0:-197.309,-19.2659,0,-197.309,-19.2659,-197.309	1/1:76:0,75,0:0:0:75,0:2596,0:-233.621,-22.5773,0,-233.621,-22.5773,-233.621	1/1:85:0,85,0:0:0:85,0:2820,0:-254.036,-25.5876,0,-254.036,-25.5876,-254.036	1/2:136:0,37,97:0:0:37,97:1280,3418:-379.082,-275.069,-263.931,-104.019,0,-74.8193	1/1:71:1,70,0:1:27:70,0:2343,0:-208.426,-18.6733,0,-208.727,-21.0721,-210.855	1/1:70:2,68,0:2:57:68,0:2268,0:-198.965,-15.6588,0,-199.567,-20.47,-204.092	1/1:72:0,72,0:0:0:72,0:2464,0:-222.014,-21.6742,0,-222.014,-21.6742,-222.014	1/1:68:0,67,0:0:0:67,0:2246,0:-202.115,-20.169,0,-202.115,-20.169,-202.115	1/2:80:0,24,56:0:0:24,56:816,1991:-226.555,-160.372,-153.147,-66.5263,0,-49.6687	1/2:506:1,139,363:1:21:139,363:4780,12827:-1422.95,-1035.13,-994.872,-386.575,0,-278.89	1/2:224:1,63,159:1:36:63,159:2164,5640:-628.419,-453.009,-436.982,-172.813,0,-127.887	1/1:128:2,125,1:2:72:125,1:4367,36:-388.479,-33.8658,0,-386.144,-34.6536,-389.68	1/1:66:0,66,0:0:0:66,0:2307,0:-207.89,-19.868,0,-207.89,-19.868,-207.89	1/1:98:0,92,6:0:0:92,6:3196,216:-287.505,-27.6948,0,-269.97,-9.80165,-268.163	1/1:52:0,52,0:0:0:52,0:1783,0:-160.749,-15.6536,0,-160.749,-15.6536,-160.749	1/1:328:1,326,1:1:21:326,1:11191,36:-1004.92,-96.6218,0,-1002.29,-95.1234,-1003.57	1/1:281:0,278,1:0:0:278,1:9606,36:-864.095,-83.6863,0,-861.202,-80.7954,-860.901	1/1:47:0,47,0:0:0:47,0:1595,0:-143.833,-14.1484,0,-143.833,-14.1484,-143.833	1/1:378:3,370,2:3:93:370,2:12676,72:-1132.03,-103.918,0,-1127.07,-105.508,-1133.93	1/1:83:0,82,1:0:0:82,1:2858,36:-257.099,-24.6845,0,-254.162,-21.3872,-253.861	1/1:128:0,127,0:0:0:127,0:4375,0:-393.558,-38.2308,0,-393.558,-38.2308,-393.558	1/1:21:0,21,0:0:0:21,0:712,0:-64.3857,-6.32163,0,-64.3857,-6.32163,-64.3857	1/2:34:0,17,17:0:0:17,17:567,608:-95.6808,-49.7993,-44.6818,-46.2265,0,-41.109	1/2:11:0,5,6:0:0:5,6:165,216:-31.0986,-17.7718,-16.2667,-13.6685,0,-11.8623	1/1:14:0,14,0:0:0:14,0:481,0:-43.6151,-4.21442,0,-43.6151,-4.21442,-43.6151	1/1:16:0,16,0:0:0:16,0:556,0:-50.3672,-4.81648,0,-50.3672,-4.81648,-50.3672	1/1:185:0,185,0:0:0:185,0:6338,0:-570.372,-55.6906,0,-570.372,-55.6906,-570.372	1/2:269:0,84,181:0:0:84,181:2863,6439:-753.726,-521.445,-496.158,-232.31,0,-177.824	1/2:113:0,37,76:0:0:37,76:1274,2718:-322.536,-219.064,-207.926,-103.819,0,-80.9411	1/2:7:0,2,5:0:0:2,5:72,180:-20.735,-14.859,-14.2569,-6.23466,0,-4.72951	1/2:255:0,72,179:0:0:72,179:2524,6358:-719.241,-513.854,-492.18,-205.418,0,-151.534	1/2:62:0,23,39:0:0:23,39:789,1370:-174.736,-110.68,-103.756,-64.4004,0,-52.6602	1/1:158:0,155,1:0:0:155,1:5345,36:-480.865,-46.6597,0,-477.928,-43.7073,-477.627	1/1:76:0,75,0:0:0:75,0:2548,0:-229.313,-22.5773,0,-229.313,-22.5773,-229.313	1/2:129:0,34,93:0:0:34,93:1160,3267:-358.138,-264.015,-253.78,-94.2047,0,-66.2089	1/2:108:0,34,74:0:0:34,74:1158,2599:-304.274,-210.348,-200.112,-94.2691,0,-71.9928	1/1:124:0,123,0:0:0:123,0:4223,0:-379.946,-37.0267,0,-379.946,-37.0267,-379.946	1/2:287:0,109,178:0:0:109,178:3809,6307:-821.757,-511.91,-479.098,-310.197,0,-256.614	1/1:75:1,73,0:1:36:73,0:2511,0:-222.683,-18.9978,0,-222.984,-21.9752,-225.922	1/2:310:1,88,214:1:24:88,214:3033,7635:-863.767,-617.975,-593.342,-244.266,0,-181.704	1/2:271:0,88,183:0:0:88,183:3018,6502:-773.224,-528.216,-501.725,-245.355,0,-190.266	1/1:20:0,20,0:0:0:20,0:691,0:-62.5103,-6.0206,0,-62.5103,-6.0206,-62.5103	1/2:269:0,79,190:0:0:79,190:2714,6729:-761.542,-541.17,-517.388,-220.718,0,-163.522	1/1:44:0,44,0:0:0:44,0:1497,0:-135.015,-13.2453,0,-135.015,-13.2453,-135.015	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:173:0,173,0:0:0:173,0:6018,0:-541.711,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chr01	33886137	.	A	G	349483	PASS	AB=0.493986;ABP=5.36113;AC=143;AF=0.768817;AN=186;AO=12945;CIGAR=1X;DP=16782;DPB=16782;DPRA=0;EPP=28095.4;EPPR=8293.69;GTI=0;LEN=1;MEANALT=1.12903;MQM=59.9854;MQMR=59.9749;NS=93;NUMALT=1;ODDS=9.22585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=458546;QR=135212;RO=3822;RPL=6637;RPP=21.1673;RPPR=30.0111;RPR=6308;RUN=1;SAF=6639;SAP=21.6115;SAR=6306;SRF=1803;SRP=29.5179;SRR=2019;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:6,15:6:207:15:523:-41.0768,0,-12.6453	0/1:115:58,57:58:2061:57:2035:-148.803,0,-151.141	1/1:61:0,61:0:0:61:2153:-194.036,-18.3628,0	1/1:381:2,379:2:72:379:13370:-1196.27,-107.856,0	0/1:93:51,42:51:1824:42:1508:-108.019,0,-136.444	0/1:78:36,42:36:1258:42:1472:-109.291,0,-90.0379	0/1:205:103,102:103:3661:102:3618:-264.115,0,-267.983	1/1:198:0,195:0:0:195:6867:-617.79,-58.7009,0	0/1:60:29,31:29:1027:31:1094:-80.7065,0,-74.6804	0/1:221:110,110:110:3884:110:3880:-282.626,0,-283.24	1/1:161:0,161:0:0:161:5717:-514.65,-48.4658,0	1/1:110:0,109:0:0:109:3784:-340.402,-32.8123,0	1/1:106:0,106:0:0:106:3691:-332.393,-31.9092,0	0/1:172:80,92:80:2838:92:3262:-242.025,0,-203.882	1/1:163:0,163:0:0:163:5764:-518.881,-49.0679,0	1/1:142:0,142:0:0:142:5065:-455.996,-42.7463,0	1/1:102:0,102:0:0:102:3626:-326.545,-30.7051,0	1/1:102:1,101:1:36:101:3568:-317.73,-27.1068,0	0/1:74:33,41:33:1180:41:1431:-106.806,0,-84.2318	0/1:361:178,183:178:6281:183:6506:-476.957,0,-456.719	0/1:314:140,174:140:4964:174:6196:-463.198,0,-352.384	1/1:175:1,173:1:36:173:6087:-544.339,-49.1408,0	1/1:250:1,248:1:36:248:8839:-791.901,-71.718,0	1/1:304:15,289:15:532:289:10235:-872.877,-43.3,0	1/1:201:1,200:1:32:200:7090:-634.968,-57.3077,0	1/1:540:0,539:0:0:539:19156:-1723.25,-162.255,0	1/1:523:0,522:0:0:522:18594:-1672.68,-157.138,0	1/1:81:0,81:0:0:81:2880:-259.435,-24.3834,0	1/1:438:0,437:0:0:437:15537:-1397.68,-131.55,0	1/1:212:1,209:1:36:209:7410:-663.35,-59.9779,0	1/1:212:3,209:3:100:209:7370:-654.024,-54.4879,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	0/1:70:23,47:23:824:47:1680:-130.415,0,-53.4112	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:433:1,432:1:36:432:15296:-1372.77,-126.748,0	0/1:246:113,133:113:4012:133:4712:-350.189,0,-287.216	0/1:94:42,52:42:1484:52:1824:-136.141,0,-105.555	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:239:105,134:105:3723:134:4771:-357.603,0,-263.328	0/1:90:34,56:34:1205:56:1995:-152.731,0,-81.6612	1/1:342:0,342:0:0:342:12200:-1097.85,-102.952,0	1/1:214:0,214:0:0:214:7545:-679.098,-64.4204,0	0/1:156:78,78:78:2705:78:2724:-198.44,0,-196.731	0/1:208:109,99:109:3822:99:3489:-251.607,0,-281.567	1/1:77:0,76:0:0:76:2665:-239.736,-22.8783,0	0/1:351:152,199:152:5371:199:7029:-527.016,0,-377.861	1/1:213:1,212:1:36:212:7503:-671.706,-60.5211,0	0/1:277:133,144:133:4705:144:5126:-378.099,0,-340.226	0/1:370:198,172:198:6994:172:6092:-437.006,0,-518.115	1/1:35:0,35:0:0:35:1235:-111.453,-10.5361,0	0/1:94:58,36:58:2071:36:1292:-88.2869,0,-158.363	1/1:117:1,116:1:36:116:4112:-366.654,-31.6222,0	1/1:12:0,12:0:0:12:417:-37.8495,-3.61236,0	1/1:220:1,218:1:36:218:7784:-696.995,-62.6871,0	1/1:115:0,115:0:0:115:4069:-366.399,-34.6185,0	1/1:20:1,19:1:36:19:680:-57.9309,-2.42233,0	0/1:33:18,15:18:640:15:531:-38.1879,0,-47.9953	1/1:147:0,147:0:0:147:5234:-471.201,-44.2514,0	1/1:204:0,204:0:0:204:7189:-647.074,-61.4101,0	0/1:20:11,9:11:375:9:324:-23.4853,0,-28.0573	1/1:254:1,253:1:36:253:8930:-800.088,-72.8633,0	0/1:412:201,211:201:7119:211:7473:-548.596,0,-516.744	1/1:146:1,145:1:36:145:5154:-460.403,-40.3521,0	1/1:144:0,144:0:0:144:5084:-457.709,-43.3483,0	1/1:343:3,340:3:108:340:12064:-1075.54,-93.1781,0	0/1:366:242,124:242:8518:124:4396:-285.635,0,-656.214	1/1:117:0,117:0:0:117:4189:-377.191,-35.2205,0	0/1:76:32,44:32:1152:44:1564:-118.173,0,-81.1119	1/1:178:0,178:0:0:178:6315:-568.445,-53.5833,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:78:33,45:33:1175:45:1584:-119.367,0,-82.5766	0/1:80:42,38:42:1504:38:1336:-96.4548,0,-111.572	1/1:452:0,452:0:0:452:16038:-1443.04,-136.066,0	0/1:286:172,114:172:6075:114:4007:-274.728,0,-460.765	0/1:95:58,37:58:2055:37:1302:-88.882,0,-156.62	0/1:98:44,54:44:1567:54:1898:-141.592,0,-111.82	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:266:130,136:130:4607:136:4804:-352.444,0,-334.725	0/1:63:34,29:34:1202:29:1036:-74.589,0,-89.5193	0/1:375:184,190:184:6501:190:6739:-493.645,0,-472.228	0/1:227:104,123:104:3663:123:4335:-321.995,0,-261.542	1/1:173:0,173:0:0:173:6067:-546.143,-52.0782,0	0/1:210:113,97:113:3980:97:3424:-245.159,0,-295.178	0/1:320:171,149:171:6095:149:5243:-375.681,0,-452.322	0/1:53:23,30:23:810:30:1058:-79.575,0,-57.2644	1/1:130:0,130:0:0:130:4594:-413.628,-39.1339,0	1/1:104:0,104:0:0:104:3707:-333.833,-31.3071,0	0/1:105:60,45:60:2128:45:1581:-110.971,0,-160.181	0/1:212:115,97:115:4064:97:3430:-245.095,0,-302.131	0/1:190:124,66:124:4393:66:2325:-152.314,0,-338.35	1/1:252:1,251:1:36:251:8841:-792.092,-72.2613,0	1/1:316:2,314:2:68:314:11192:-1000.71,-88.6678,0
chr01	33906080	.	TG	CA,CG	125083	PASS	AB=0.496754,0.499488;ABP=3.27812,3.01698;AC=142,46;AF=0.755319,0.244681;AN=188;AO=4447,1474;CIGAR=2X,1X1M;DP=5937;DPB=5937;DPRA=63.828,1.32007;EPP=9642.18,3203.76;EPPR=11.6962;GTI=2;LEN=2,1;MEANALT=1.69892,2.18519;MQM=59.8727,59.941;MQMR=60;NS=94;NUMALT=2;ODDS=1.99637;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=156611,52343;QR=144;RO=4;RPL=2,0;RPP=9642.18,3203.76;RPPR=11.6962;RPR=4445,1474;RUN=1,1;SAF=0,0;SAP=9659.55,3203.76;SAR=4447,1474;SRF=0;SRP=11.6962;SRR=4;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,14,24:0:0:14,24:504,848:-110.527,-69.4149,-65.2005,-41.4699,0,-34.2451	1/2:126:0,55,71:0:0:55,71:1922,2544:-364.181,-207.838,-191.281,-156.697,0,-135.324	1/1:96:0,96,0:0:0:96,0:3389,0:-305.179,-28.8989,0,-305.179,-28.8989,-305.179	1/1:140:0,139,1:0:0:139,1:4823,36:-433.867,-41.8432,0,-430.929,-38.5459,-430.628	1/2:36:0,19,16:0:0:19,16:673,572:-101.458,-46.6373,-40.9177,-54.8169,0,-50.0004	1/2:36:0,29,7:0:0:29,7:1042,252:-105.927,-20.9217,-12.1919,-85.3648,0,-83.2576	1/2:85:0,38,47:0:0:38,47:1356,1676:-247.523,-136.979,-125.54,-110.901,0,-96.7524	1/1:104:0,103,0:0:0:103,0:3576,0:-321.66,-31.0061,0,-321.66,-31.0061,-321.66	1/2:77:0,38,39:0:0:38,39:1330,1385:-221.412,-113.207,-101.768,-108.558,0,-96.8178	1/2:104:0,40,64:0:0:40,64:1399,2257:-297.929,-184.124,-172.083,-114.156,0,-94.8899	1/1:32:0,32,0:0:0:32,0:1128,0:-101.823,-9.63296,0,-101.823,-9.63296,-101.823	1/1:51:0,51,0:0:0:51,0:1778,0:-160.107,-15.3525,0,-160.107,-15.3525,-160.107	1/1:52:0,52,0:0:0:52,0:1847,0:-166.509,-15.6536,0,-166.509,-15.6536,-166.509	1/2:50:0,25,24:0:0:25,24:889,851:-141.93,-69.4786,-61.9528,-72.5973,0,-65.3726	1/1:39:1,38,0:1:36:38,0:1340,0:-117.286,-8.1419,0,-117.587,-11.4391,-120.525	1/1:29:0,29,0:0:0:29,0:1023,0:-92.3809,-8.72987,0,-92.3809,-8.72987,-92.3809	1/1:30:0,30,0:0:0:30,0:1066,0:-96.247,-9.0309,0,-96.247,-9.0309,-96.247	1/1:27:0,27,0:0:0:27,0:957,0:-86.4449,-8.12781,0,-86.4449,-8.12781,-86.4449	1/2:10:0,2,8:0:0:2,8:72,280:-29.0079,-23.1311,-22.529,-6.23466,0,-3.82642	1/2:102:0,47,55:0:0:47,55:1650,1956:-294.039,-159.756,-145.608,-134.636,0,-118.079	1/2:142:0,83,59:0:0:83,59:2945,2072:-408.931,-168.988,-144.002,-240.295,0,-222.535	1/1:95:0,95,0:0:0:95,0:3312,0:-298.297,-28.5979,0,-298.297,-28.5979,-298.297	1/1:70:0,70,0:0:0:70,0:2460,0:-221.652,-21.0721,0,-221.652,-21.0721,-221.652	1/2:85:0,74,10:0:0:74,10:2617,360:-242.593,-29.4468,-7.17055,-213.218,0,-210.208	1/1:43:0,43,0:0:0:43,0:1527,0:-137.723,-12.9443,0,-137.723,-12.9443,-137.723	1/1:243:0,241,1:0:0:241,1:8511,36:-765.611,-72.5482,0,-762.674,-69.6108,-762.373	1/1:91:0,90,1:0:0:90,1:3099,36:-278.771,-27.0927,0,-275.833,-23.7955,-275.532	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:167:0,167,0:0:0:167,0:5902,0:-531.293,-50.272,0,-531.293,-50.272,-531.293	1/1:96:0,96,0:0:0:96,0:3398,0:-305.845,-28.8989,0,-305.845,-28.8989,-305.845	1/1:100:0,100,0:0:0:100,0:3554,0:-320.066,-30.103,0,-320.066,-30.103,-320.066	1/1:2:0,2,0:0:0:2,0:70,0:-6.64733,-0.60206,0,-6.64733,-0.60206,-6.64733	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:120:0,120,0:0:0:120,0:4205,0:-378.631,-36.1236,0,-378.631,-36.1236,-378.631	1/2:157:0,78,79:0:0:78,79:2745,2814:-453.175,-229.718,-206.237,-223.811,0,-200.03	1/2:42:0,21,21:0:0:21,21:741,723:-119.35,-59.0641,-52.7425,-60.6342,0,-54.3126	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/2:117:1,56,59:1:36:56,59:1967,2087:-326.887,-167.095,-153.175,-157.2,0,-142.377	1/2:17:0,11,6:0:0:11,6:385,212:-48.9395,-17.6186,-14.3073,-31.6729,0,-29.8667	1/1:85:0,85,0:0:0:85,0:3000,0:-270.23,-25.5876,0,-270.23,-25.5876,-270.23	1/1:41:0,41,0:0:0:41,0:1466,0:-132.236,-12.3422,0,-132.236,-12.3422,-132.236	1/2:39:0,21,18:0:0:21,18:727,644:-111.946,-52.8721,-46.5504,-59.4263,0,-54.0078	1/2:68:0,34,33:0:0:34,33:1208,1165:-193.137,-94.6978,-84.4628,-98.5382,0,-88.6042	1/1:62:0,62,0:0:0:62,0:2161,0:-194.316,-18.6639,0,-194.316,-18.6639,-194.316	1/2:131:0,58,72:0:0:58,72:2028,2552:-372.827,-207.849,-190.39,-164.969,0,-143.295	1/1:41:0,41,0:0:0:41,0:1415,0:-127.64,-12.3422,0,-127.64,-12.3422,-127.64	1/2:115:1,50,64:1:36:50,64:1749,2296:-326.216,-184.232,-172.118,-139.342,0,-123.013	1/2:151:0,74,77:0:0:74,77:2620,2747:-437.218,-224.293,-202.017,-213.28,0,-190.101	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/2:85:0,40,44:0:0:40,44:1402,1566:-241.636,-127.626,-115.585,-114.003,0,-100.757	1/1:17:0,16,1:0:0:16,1:576,36:-51.8152,-4.81648,0,-48.8777,-1.51924,-48.5767	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:47:0,47,0:0:0:47,0:1660,0:-149.686,-14.1484,0,-149.686,-14.1484,-149.686	1/1:37:0,37,0:0:0:37,0:1317,0:-118.832,-11.1381,0,-118.832,-11.1381,-118.832	1/1:6:0,6,0:0:0:6,0:198,0:-1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chr01	33913847	.	ATC	GTA,ATA	216636	PASS	AB=0.492654,0.505975;ABP=5.40296,4.59307;AC=141,45;AF=0.758065,0.241935;AN=186;AO=7596,2594;CIGAR=1X1M1X,2M1X;DP=10206;DPB=10206.7;DPRA=0,1.48768;EPP=16497.5,5627.13;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.73118,2.15094;MQM=57.7944,59.6303;MQMR=60;NS=93;NUMALT=2;ODDS=0.0355786;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=68,0;PQR=0;PRO=0;QA=268371,92861;QR=28;RO=1;RPL=7596,2594;RPP=16497.5,5635.81;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,1;SAP=16497.5,5627.13;SAR=7596,2593;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,6,24:0:0:6,24:201,864:-87.0091,-70.8511,-69.045,-16.4962,0,-9.27146	1/2:150:1,81,68:1:28:81,68:2813,2433:-422.769,-195.309,-173.143,-225.615,0,-207.362	1/1:80:0,80,0:0:0:80,0:2830,0:-254.643,-24.0824,0,-254.643,-24.0824,-254.643	1/1:201:0,201,0:0:0:201,0:7108,0:-638.942,-60.507,0,-638.942,-60.507,-638.942	1/2:104:0,57,45:0:0:57,45:2029,1612:-296.664,-131.447,-114.289,-165.218,0,-151.671	1/2:55:0,27,28:0:0:27,28:944,1004:-158.945,-82.2307,-74.1029,-77.068,0,-68.6391	1/2:120:0,55,65:0:0:55,65:1934,2332:-347.357,-190.139,-173.583,-157.572,0,-138.005	1/1:189:0,189,0:0:0:189,0:6652,0:-597.262,-56.8947,0,-597.262,-56.8947,-597.262	1/2:62:0,28,34:0:0:28,34:984,1220:-179.487,-99.8718,-91.4429,-79.9684,0,-69.7334	1/2:140:0,68,72:0:0:68,72:2410,2584:-407.357,-211.135,-190.665,-196.579,0,-174.905	1/1:80:0,80,0:0:0:80,0:2842,0:-255.702,-24.0824,0,-255.702,-24.0824,-255.702	1/1:81:0,81,0:0:0:81,0:2886,0:-259.775,-24.3834,0,-259.775,-24.3834,-259.775	1/1:56:0,56,0:0:0:56,0:2009,0:-180.382,-16.8577,0,-180.382,-16.8577,-180.382	1/2:119:0,56,63:0:0:56,63:1981,2259:-345.782,-184.545,-167.687,-161.593,0,-142.628	1/1:65:0,65,0:0:0:65,0:2328,0:-209.599,-19.567,0,-209.599,-19.567,-209.599	1/1:64:0,64,0:0:0:64,0:2247,0:-202.281,-19.2659,0,-202.281,-19.2659,-202.281	1/1:95:0,95,0:0:0:95,0:3371,0:-303.152,-28.5979,0,-303.152,-28.5979,-303.152	1/1:62:0,62,0:0:0:62,0:2189,0:-196.803,-18.6639,0,-196.803,-18.6639,-196.803	1/2:65:0,26,38:0:0:26,38:924,1368:-186.85,-111.632,-103.806,-75.2906,0,-63.8515	1/2:174:0,92,81:0:0:92,81:3277,2889:-502.277,-235.331,-207.636,-266.942,0,-242.559	1/2:122:0,70,52:0:0:70,52:2452,1872:-351.986,-152.673,-131.601,-199.668,0,-184.014	1/1:128:0,127,0:0:0:127,0:4511,0:-405.753,-38.2308,0,-405.753,-38.2308,-405.753	1/1:41:0,41,0:0:0:41,0:1433,0:-129.251,-12.3422,0,-129.251,-12.3422,-129.251	1/2:79:0,71,8:0:0:71,8:2506,288:-227.69,-23.8592,-2.48604,-204.19,0,-201.782	1/1:59:0,59,0:0:0:59,0:2077,0:-186.751,-17.7608,0,-186.751,-17.7608,-186.751	1/1:440:0,438,1:0:0:438,1:15433,36:-1387.17,-131.851,0,-1384.26,-128.926,-1383.96	1/1:215:0,214,1:0:0:214,1:7625,36:-685.498,-64.4204,0,-682.56,-61.1232,-682.259	1/1:45:0,45,0:0:0:45,0:1612,0:-145.325,-13.5464,0,-145.325,-13.5464,-145.325	1/1:258:0,257,1:0:0:257,1:9019,36:-811.138,-77.3647,0,-808.2,-74.0675,-807.899	1/1:213:0,210,2:0:0:210,2:7399,68:-664.734,-63.2163,0,-659.219,-57.6272,-658.617	1/1:159:0,158,0:0:0:158,0:5547,0:-498.513,-47.5627,0,-498.513,-47.5627,-498.513	1/1:16:0,16,0:0:0:16,0:560,0:-50.7085,-4.81648,0,-50.7085,-4.81648,-50.7085	1/2:10:0,4,6:0:0:4,6:142,216:-29.4782,-17.9843,-16.7802,-11.8495,0,-10.0433	1/1:1:0,1,0:0:0:1,0:36,0:-3.59457,-0.30103,0,-3.59457,-0.30103,-3.59457	1/1:4:0,4,0:0:0:4,0:144,0:-13.3102,-1.20412,0,-13.3102,-1.20412,-13.3102	1/2:18:0,6,12:0:0:6,12:212,428:-52.4933,-35.2464,-33.4403,-17.6009,0,-13.9886	1/1:262:0,262,0:0:0:262,0:9340,0:-840.167,-78.8699,0,-840.167,-78.8699,-840.167	1/2:253:0,119,134:0:0:119,134:4169,4789:-729.557,-390.636,-354.813,-339.275,0,-298.937	1/2:102:0,46,56:0:0:46,56:1645,2008:-298.169,-164.115,-150.268,-134.411,0,-117.554	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/2:174:0,92,82:0:0:92,82:3266,2936:-505.598,-239.779,-212.084,-266.176,0,-241.491	1/2:45:0,19,26:0:0:19,26:676,932:-131.37,-76.3721,-70.6525,-55.3544,0,-47.5277	1/1:110:0,110,0:0:0:110,0:3865,0:-347.222,-33.1133,0,-347.222,-33.1133,-347.222	1/1:70:0,70,0:0:0:70,0:2504,0:-224.743,-21.0721,0,-224.743,-21.0721,-224.743	1/2:72:0,31,41:0:0:31,41:1110,1472:-210.923,-120.415,-111.084,-90.8655,0,-78.5233	1/2:81:0,39,42:0:0:39,42:1389,1508:-236.251,-123.315,-111.575,-113.293,0,-100.65	1/1:132:0,132,0:0:0:132,0:4632,0:-416.342,-39.736,0,-416.342,-39.736,-416.342	1/2:173:0,101,72:0:0:101,72:3541,2547:-495.303,-207.765,-177.361,-287.89,0,-266.215	1/1:106:0,106,0:0:0:106,0:3743,0:-336.915,-31.9092,0,-336.915,-31.9092,-336.915	1/2:172:0,68,104:0:0:68,104:2387,3736:-499.161,-305.021,-284.551,-194.493,0,-163.186	1/2:174:0,71,103:0:0:71,103:2510,3696:-505.605,-301.833,-280.46,-204.127,0,-173.121	1/1:26:0,26,0:0:0:26,0:934,0:-84.3213,-7.82678,0,-84.3213,-7.82678,-84.3213	1/2:148:0,85,63:0:0:85,63:3005,2260:-428.611,-184.298,-158.711,-244.668,0,-225.704	1/1:102:0,102,0:0:0:102,0:3563,0:-320.503,-30.7051,0,-320.503,-30.7051,-320.503	1/1:9:0,9,0:0:0:9,0:320,0:-29.1202,-2.70927,0,-29.1202,-2.70927,-29.1202	1/1:128:0,127,1:0:0:127,1:4431,36:-398.184,-38.2308,0,-395.246,-34.9336,-394.945	1/1:27: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chr01	33922804	.	G	A	115412	PASS	AB=0.562509;ABP=229.692;AC=53;AF=0.281915;AN=188;AO=4881;CIGAR=1X;DP=13695;DPB=13695;DPRA=1.38587;EPP=1903.77;EPPR=65.8613;GTI=6;LEN=1;MEANALT=1.0339;MQM=59.9789;MQMR=59.9938;NS=94;NUMALT=1;ODDS=1.70906;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173365;QR=313596;RO=8811;RPL=11;RPP=10506.6;RPPR=18755.6;RPR=4870;RUN=1;SAF=3485;SAP=1944.44;SAR=1396;SRF=4702;SRP=89.6743;SRR=4109;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:18,35:18:644:35:1239:-95.8591,0,-42.336	0/1:228:105,123:105:3768:123:4360:-323.935,0,-270.684	0/0:168:167,1:167:5972:1:36:0,-46.9748,-533.986	0/0:245:245,0:245:8729:0:0:0,-73.7523,-785.599	0/1:92:35,57:35:1256:57:1999:-152.486,0,-85.6496	0/1:75:34,41:34:1208:41:1460:-109.119,0,-86.4488	0/1:197:109,88:109:3793:88:3111:-220.914,0,-282.263	0/0:158:155,3:155:5514:3:108:0,-37.4876,-486.311	0/1:110:55,55:55:1946:55:1935:-141.31,0,-142.299	0/1:141:84,57:84:2973:57:2031:-140.598,0,-225.358	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.157	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/0:128:128,0:128:4577:0:0:0,-38.5318,-412.094	0/1:137:72,65:72:2576:65:2305:-166.469,0,-190.848	0/0:123:123,0:123:4403:0:0:0,-37.0267,-396.442	0/0:126:125,1:125:4453:1:36:0,-34.3315,-397.343	0/0:87:87,0:87:3081:0:0:0,-26.1896,-277.516	0/0:108:108,0:108:3837:0:0:0,-32.5112,-345.527	0/1:134:36,98:36:1288:98:3505:-275.321,0,-75.8856	0/1:212:94,118:94:3359:118:4179:-312.475,0,-238.708	0/1:264:115,149:115:4063:149:5287:-396.496,0,-286.387	0/0:56:56,0:56:1990:0:0:0,-16.8577,-179.373	0/0:75:75,0:75:2674:0:0:0,-22.5772,-240.905	0/1:156:141,15:141:5037:15:523:-0.437777,0,-406.51	0/0:83:82,1:82:2910:1:36:0,-21.3872,-258.537	0/0:303:302,1:302:10797:1:36:0,-87.6138,-968.036	0/0:287:287,0:287:10190:0:0:0,-86.3956,-917.033	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.832	0/0:310:310,0:310:11012:0:0:0,-93.3193,-990.975	0/0:197:196,1:196:7022:1:36:0,-55.7046,-628.442	0/0:113:113,0:113:4032:0:0:0,-34.0164,-363.067	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:206:6,199:6:216:199:7110:-620.166,-42.2805,0	1/1:158:1,157:1:36:157:5612:-501.602,-43.9645,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:251:4,247:4:129:247:8743:-774.933,-63.6309,0	0/0:313:313,0:313:11198:0:0:0,-94.2224,-1007.71	0/1:113:54,58:54:1920:58:2076:-153.035,0,-139.002	0/1:240:46,194:46:1643:194:6960:-554.216,0,-75.9107	1/1:97:2,95:2:72:95:3404:-299.738,-22.3632,0	0/1:168:86,82:86:3059:82:2884:-209.221,0,-224.967	0/1:142:41,101:41:1464:101:3636:-284.697,0,-89.3016	0/0:183:183,0:183:6500:0:0:0,-55.0885,-585.089	0/0:152:152,0:152:5418:0:0:0,-45.7566,-487.751	0/1:95:51,44:51:1774:44:1541:-110.382,0,-131.344	0/1:111:56,55:56:1969:55:1946:-142.001,0,-144.069	0/0:84:83,1:83:2961:1:36:0,-21.6882,-263.124	0/1:198:101,97:101:3610:97:3389:-245.621,0,-265.501	0/0:88:88,0:88:3138:0:0:0,-26.4906,-282.645	0/1:203:92,111:92:3257:111:3929:-292.696,0,-232.243	0/1:203:112,91:112:3982:91:3208:-227.835,0,-297.463	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:198:80,118:80:2860:118:4204:-318.935,0,-198.034	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:176:175,1:175:6184:1:36:0,-49.383,-553.065	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:255:4,251:4:140:251:8930:-790.68,-63.8181,0	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.14	0/0:172:171,1:171:6089:1:36:0,-48.1789,-544.495	1/1:161:1,160:1:36:160:5725:-511.767,-44.8676,0	0/0:159:159,0:159:5586:0:0:0,-47.8638,-502.864	0/1:233:100,133:100:3521:133:4645:-348.076,0,-246.958	0/1:89:46,43:46:1628:43:1506:-109.037,0,-120.014	0/0:103:103,0:103:3625:0:0:0,-31.0061,-326.454	0/0:140:139,1:139:4953:1:36:0,-38.5459,-442.322	0/1:141:42,99:42:1504:99:3488:-271.673,0,-93.2094	0/0:69:67,2:67:2372:2:72:0,-13.9343,-206.896	0/1:145:64,81:64:2300:81:2892:-216.867,0,-163.611	0/0:143:143,0:143:5101:0:0:0,-43.0473,-459.231	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:91:39,52:39:1396:52:1868:-141.006,0,-98.5454	0/1:74:40,34:40:1440:34:1211:-87.0193,0,-107.622	0/0:243:242,0:242:8631:0:0:0,-72.8493,-776.573	0/1:257:128,129:128:4565:129:4601:-336.889,0,-333.645	0/1:103:42,61:42:1504:61:2168:-164.064,0,-104.648	0/1:133:62,71:62:2210:71:2512:-186.294,0,-159.127	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:203:83,120:83:2959:120:4244:-321.033,0,-205.434	0/0:107:106,1:106:3779:1:36:0,-28.6119,-336.711	0/1:327:173,154:173:6152:154:5423:-389.742,0,-455.345	0/1:149:77,72:77:2745:72:2556:-185.435,0,-202.438	0/0:113:113,0:113:4026:0:0:0,-34.0164,-362.529	0/1:174:93,81:93:3281:81:2828:-202.381,0,-243.13	0/1:223:119,104:119:4247:104:3701:-266.162,0,-315.28	0/1:62:29,33:29:1036:33:1175:-87.3931,0,-74.8901	0/0:116:116,0:116:4124:0:0:0,-34.9195,-371.337	0/0:93:93,0:93:3320:0:0:0,-27.9958,-299.019	0/1:316:45,271:45:1592:271:9680:-776.023,0,-48.4421	0/1:355:69,286:69:2463:286:10220:-812.861,0,-115.058	0/1:125:45,80:45:1616:80:2840:-218.208,0,-108.101	0/0:152:152,0:152:5393:0:0:0,-45.7566,-485.502	0/0:208:208,0:208:7348:0:0:0,-62.6142,-661.375
chr01	34079839	.	T	C	41003.7	PASS	AB=0.499278;ABP=3.03226;AC=31;AF=0.166667;AN=186;AO=2437;CIGAR=1X;DP=12305;DPB=12305;DPRA=1.60217;EPP=5294.89;EPPR=21409.4;GTI=2;LEN=1;MEANALT=1.04444;MQM=59.817;MQMR=59.8814;NS=93;NUMALT=1;ODDS=2.11888;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87299;QR=353046;RO=9866;RPL=0;RPP=5294.89;RPPR=21426.8;RPR=2437;RUN=1;SAF=2437;SAP=5294.89;SAR=0;SRF=9864;SRP=21409.4;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.945	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.093	0/0:125:125,0:125:4466:0:0:0,-37.6287,-402.107	0/0:233:232,1:232:8267:1:36:0,-66.5417,-740.406	0/1:105:49,56:49:1760:56:2008:-149.381,0,-127.076	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.747	0/1:271:136,135:136:4834:135:4829:-353.172,0,-352.765	0/0:286:286,0:286:10230:0:0:0,-86.0946,-920.553	0/0:92:92,0:92:3269:0:0:0,-27.6948,-294.428	0/1:197:97,100:97:3465:100:3592:-264.173,0,-252.758	0/0:121:120,1:120:4285:1:36:0,-32.8264,-382.223	0/0:119:119,0:119:4249:0:0:0,-35.8226,-382.558	0/0:118:118,0:118:4244:0:0:0,-35.5215,-382.137	0/1:123:64,59:64:2296:59:2116:-153.673,0,-169.872	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.503	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.058	0/0:124:124,0:124:4444:0:0:0,-37.3277,-400.13	0/0:111:111,0:111:3981:0:0:0,-33.4143,-358.478	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:318:170,148:170:6086:148:5256:-377.44,0,-452.055	0/1:144:73,70:73:2601:70:2512:-182.92,0,-190.928	0/0:91:88,3:88:3168:3:108:0,-17.3186,-275.268	0/0:141:140,1:140:4990:1:36:0,-38.847,-445.62	0/1:249:110,139:110:3914:139:4985:-373.821,0,-277.063	0/0:159:159,0:159:5708:0:0:0,-47.8638,-513.836	0/0:443:442,1:442:15746:1:32:0,-130.157,-1413.07	0/0:276:276,0:276:9851:0:0:0,-83.0843,-886.49	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.298	0/0:264:264,0:264:9450:0:0:0,-79.4719,-850.412	0/0:183:181,1:181:6435:1:36:0,-51.549,-575.632	0/0:260:259,1:259:9277:1:36:0,-74.6695,-831.258	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	.:.:.:.:.:.:.:.	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:278:278,0:278:9938:0:0:0,-83.6863,-894.243	0/1:191:97,94:97:3472:94:3368:-245.833,0,-255.195	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.242	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:208:123,85:123:4405:85:3056:-212.623,0,-334.006	0/1:53:27,26:27:972:26:924:-67.5185,0,-71.8387	0/0:114:114,0:114:4073:0:0:0,-34.3174,-366.686	0/0:147:147,0:147:5284:0:0:0,-44.2514,-475.692	0/1:106:53,53:53:1908:53:1878:-137.381,0,-139.632	0/1:148:68,80:68:2376:80:2856:-212.723,0,-169.539	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.773	0/1:152:92,60:92:3281:60:2144:-147.383,0,-249.748	0/0:151:149,2:149:5341:2:72:0,-38.6188,-473.95	0/1:156:76,80:76:2713:80:2876:-212.113,0,-196.975	0/1:324:173,151:173:6189:151:5416:-390.029,0,-459.545	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:166:166,0:166:5952:0:0:0,-49.971,-535.785	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:21:13,8:13:468:8:288:-19.9449,0,-36.138	0/0:135:135,0:135:4818:0:0:0,-40.639,-433.739	0/0:144:142,2:142:5104:2:72:0,-36.5116,-452.664	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:175:175,0:175:6250:0:0:0,-52.6802,-562.592	0/1:258:128,130:128:4547:130:4676:-343.317,0,-331.727	0/1:98:49,49:49:1764:49:1756:-128.794,0,-129.538	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.875	0/0:263:262,1:262:9348:1:36:0,-75.5726,-837.403	0/1:65:14,51:14:504:51:1828:-145.232,0,-26.1311	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:136:135,1:135:4852:1:36:0,-37.3418,-433.225	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.11	0/0:75:74,1:74:2660:1:36:0,-18.979,-236.008	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.574	0/0:280:280,0:280:10010:0:0:0,-84.2884,-900.566	0/1:254:132,122:132:4744:122:4361:-316.163,0,-350.632	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.875	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.425	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:190:111,79:111:3992:79:2844:-198.992,0,-302.272	0/0:135:135,0:135:4802:0:0:0,-40.639,-432.323	0/1:378:182,196:182:6524:196:7032:-519.096,0,-473.453	0/1:144:61,83:61:2188:83:2980:-225.072,0,-153.82	0/0:136:136,0:136:4896:0:0:0,-40.9401,-440.771	0/1:132:67,65:67:2408:65:2332:-170.397,0,-177.184	0/1:208:92,116:92:3312:116:4147:-310.779,0,-235.043	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/0:115:115,0:115:4121:0:0:0,-34.6184,-371.07	0/0:98:97,1:97:3484:1:36:0,-25.9027,-310.158	0/1:76:42,34:42:1500:34:1220:-87.2285,0,-112.416	0/1:137:79,58:79:2840:58:2088:-146.949,0,-214.417	0/1:110:33,77:33:1188:77:2747:-214.349,0,-74.1153	0/0:203:202,1:202:7249:1:36:0,-57.5108,-648.86	0/0:161:161,0:161:5788:0:0:0,-48.4658,-521.029
chr01	34079867	.	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chr01	34079876	.	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chr01	34171510	.	G	A	135935	PASS	AB=0.515251;ABP=11.0245;AC=142;AF=0.755319;AN=188;AO=6471;CIGAR=1X;DP=8421;DPB=8421;DPRA=90.5376;EPP=14054.6;EPPR=4228.7;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9657;MQMR=59.9979;NS=94;NUMALT=1;ODDS=0.193221;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=230421;QR=69055;RO=1946;RPL=0;RPP=14054.6;RPPR=4228.7;RPR=6471;RUN=1;SAF=0;SAP=14054.6;SAR=6471;SRF=0;SRP=4228.7;SRR=1946;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:30,35:30:1058:35:1251:-93.3273,0,-75.9626	0/1:155:82,73:82:2900:73:2609:-188.398,0,-214.576	1/1:97:0,97:0:0:97:3444:-309.472,-29.1999,0	1/1:162:3,159:3:108:159:5697:-502.77,-38.6917,0	0/1:81:40,41:40:1428:41:1468:-108.032,0,-104.434	0/1:70:44,26:44:1580:26:927:-62.6753,0,-121.419	0/1:97:44,53:44:1567:53:1899:-141.987,0,-112.121	1/1:102:0,102:0:0:102:3639:-327.712,-30.7051,0	0/1:114:61,53:61:2184:53:1892:-136.24,0,-162.509	0/1:72:34,38:34:1198:38:1349:-100.035,0,-86.4498	1/1:26:0,26:0:0:26:918:-82.9369,-7.82678,0	1/1:45:0,45:0:0:45:1599:-144.199,-13.5464,0	1/1:46:0,46:0:0:46:1632:-147.169,-13.8474,0	0/1:50:22,28:22:771:28:1008:-75.9849,0,-54.6588	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	1/1:41:0,41:0:0:41:1465:-132.146,-12.3422,0	1/1:54:2,52:2:72:52:1846:-159.583,-9.4189,0	1/1:28:0,28:0:0:28:968:-87.4287,-8.42884,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:184:86,98:86:3028:98:3479:-257.896,0,-217.359	0/1:128:69,59:69:2459:59:2096:-150.37,0,-183.032	1/1:128:0,127:0:0:127:4518:-406.427,-38.2308,0	1/1:110:0,110:0:0:110:3944:-355.151,-33.1133,0	0/1:177:73,103:73:2582:103:3656:-275.903,0,-179.288	1/1:69:4,65:4:144:65:2300:-193.947,-7.45745,0	1/1:277:4,273:4:140:273:9702:-860.181,-70.4407,0	1/1:160:0,160:0:0:160:5725:-515.365,-48.1648,0	1/1:19:0,19:0:0:19:656:-59.3594,-5.71957,0	1/1:217:0,217:0:0:217:7724:-695.164,-65.3235,0	1/1:189:1,188:1:27:188:6731:-603.163,-54.1949,0	1/1:201:0,200:0:0:200:7126:-641.04,-60.206,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:150:0,150:0:0:150:5355:-482.084,-45.1545,0	0/1:216:112,104:112:3955:104:3689:-267.189,0,-291.121	0/1:23:10,13:10:356:13:464:-35.1738,0,-25.4576	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:137:58,79:58:2088:79:2805:-211.447,0,-146.949	0/1:19:12,7:12:413:7:252:-17.3094,0,-31.7783	1/1:110:0,110:0:0:110:3924:-353.343,-33.1133,0	1/1:29:0,29:0:0:29:1028:-92.833,-8.72987,0	0/1:49:24,25:24:860:25:876:-64.4038,0,-62.9714	0/1:101:55,46:55:1950:46:1634:-116.943,0,-145.37	1/1:107:0,107:0:0:107:3828:-344.717,-32.2102,0	0/1:175:88,87:88:3139:87:3101:-226.629,0,-230.056	1/1:118:1,117:1:36:117:4146:-369.669,-31.9233,0	0/1:138:52,86:52:1860:86:3092:-236.965,0,-126.137	0/1:170:86,84:86:3058:84:3003:-219.326,0,-224.274	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:130:55,75:55:1963:75:2677:-202.04,0,-137.811	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	1/1:19:0,19:0:0:19:667:-60.3546,-5.71957,0	1/1:139:1,138:1:36:138:4896:-437.194,-38.2449,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	0/1:28:5,23:5:180:23:820:-65.6937,0,-8.12322	1/1:90:0,90:0:0:90:3179:-286.322,-27.0927,0	1/1:75:2,73:2:63:73:2582:-226.646,-16.5941,0	0/1:8:4,4:4:136:4:144:-10.9054,0,-10.1673	1/1:252:1,251:1:36:251:8973:-803.929,-72.2613,0	0/1:234:116,118:116:4160:118:4232:-310.618,0,-304.141	0/1:88:45,42:45:1604:42:1477:-106.801,0,-118.229	1/1:71:0,71:0:0:71:2534:-228.309,-21.3731,0	1/1:181:2,179:2:72:179:6345:-564.306,-47.6497,0	0/1:134:80,54:80:2829:54:1935:-134.088,0,-214.509	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/1:95:44,51:44:1558:51:1828:-136.203,0,-111.912	1/1:58:1,57:1:36:57:2040:-180.274,-13.8615,0	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:109:42,67:42:1489:67:2396:-183.085,0,-101.49	0/1:66:32,34:32:1152:34:1205:-88.8859,0,-84.1222	1/1:180:0,180:0:0:180:6402:-576.272,-54.1854,0	0/1:143:66,77:66:2359:77:2759:-205.504,0,-169.521	0/1:116:56,60:56:1968:60:2123:-156.419,0,-142.473	0/1:80:38,42:38:1341:42:1503:-111.481,0,-96.9056	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:104:59,45:59:2082:45:1592:-112.256,0,-156.342	1/1:149:1,148:1:36:148:5227:-466.97,-41.2552,0	1/1:161:0,161:0:0:161:5766:-519.054,-48.4658,0	0/1:75:32,43:32:1130:43:1507:-113.345,0,-79.4297	1/1:43:0,43:0:0:43:1527:-137.722,-12.9443,0	0/1:59:36,23:36:1239:23:807:-55.1876,0,-94.0472	0/1:92:45,47:45:1599:47:1667:-122.622,0,-116.505	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2693	1/1:64:0,64:0:0:64:2262:-203.84,-19.2659,0	1/1:47:0,47:0:0:47:1668:-150.407,-14.1484,0	0/1:24:8,16:8:273:16:564:-43.865,0,-17.6755	0/1:62:32,30:32:1116:30:1072:-78.1286,0,-82.0807	0/1:31:20,11:20:701:11:396:-26.6508,0,-54.0798	1/1:134:0,134:0:0:134:4772:-429.635,-40.338,0	1/1:70:1,69:1:36:69:2472:-219.135,-17.4738,0
chr01	34210613	.	G	A	42955.3	PASS	AB=0.671572;ABP=437.419;AC=142;AF=0.771739;AN=184;AO=4344;CIGAR=1X;DP=4933;DPB=4933;DPRA=9.94343;EPP=9357.88;EPPR=1275.49;GTI=15;LEN=1;MEANALT=1.03333;MQM=22.6837;MQMR=30.3686;NS=92;NUMALT=1;ODDS=0.962832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155733;QR=21007;RO=586;RPL=4335;RPP=9357.88;RPPR=1275.49;RPR=9;RUN=1;SAF=0;SAP=9435.89;SAR=4344;SRF=0;SRP=1275.49;SRR=586;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:8,13:8:288:13:453:-16.9335,0,-13.4907	0/1:62:20,42:20:720:42:1508:-56.3626,0,-30.5401	1/1:72:0,72:0:0:72:2592:-127.507,-21.6742,0	1/1:63:0,63:0:0:63:2268:-134.985,-18.9649,0	0/1:40:14,26:14:500:26:936:-38.6424,0,-23.9792	0/1:23:11,12:11:392:12:432:-14.76,0,-20.3642	0/1:54:17,37:17:612:37:1332:-63.9961,0,-30.0816	1/1:58:0,58:0:0:58:2056:-102.169,-17.4597,0	0/1:44:8,36:8:288:36:1296:-49.0993,0,-6.56699	0/1:63:27,36:27:953:36:1281:-56.9781,0,-54.533	1/1:47:0,47:0:0:47:1672:-98.685,-14.1484,0	1/1:67:0,67:0:0:67:2395:-119.452,-20.169,0	1/1:77:0,77:0:0:77:2772:-137.607,-23.1793,0	0/1:42:7,35:7:252:35:1260:-54.4828,0,-5.93443	1/1:61:0,61:0:0:61:2192:-129.545,-18.3628,0	1/1:64:0,64:0:0:64:2300:-125.059,-19.2659,0	1/1:66:1,65:1:36:65:2340:-113.434,-16.3873,0	1/1:54:0,54:0:0:54:1944:-95.817,-16.2556,0	1/1:47:0,47:0:0:47:1692:-83.7267,-14.1484,0	0/1:50:22,28:22:792:28:1000:-45.1004,0,-46.1806	0/1:62:12,50:12:428:50:1796:-78.3611,0,-12.7205	1/1:30:0,30:0:0:30:1071:-67.727,-9.0309,0	1/1:42:0,42:0:0:42:1503:-88.6763,-12.6433,0	0/1:55:7,48:7:252:48:1728:-77.9738,0,-1.86876	1/1:50:0,50:0:0:50:1796:-98.3511,-15.0515,0	1/1:152:0,152:0:0:152:5415:-344.256,-45.7566,0	1/1:130:0,130:0:0:130:4672:-251.915,-39.1339,0	1/1:34:0,34:0:0:34:1216:-66.2014,-10.235,0	1/1:104:0,104:0:0:104:3716:-236.394,-31.3071,0	1/1:80:2,78:2:72:78:2788:-146.562,-18.5671,0	1/1:47:0,47:0:0:47:1653:-98.0599,-14.1484,0	1/1:3:0,3:0:0:3:108:-6.11282,-0.90309,0	0/0:9:9,0:9:311:0:0:0,-2.70927,-22.2691	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-9.15093,-1.50515,0	0/1:7:1,6:1:36:6:216:-8.83412,0,-0.628992	1/1:184:0,184:0:0:184:6612:-420.84,-55.3895,0	0/1:46:11,35:11:392:35:1256:-54.8527,0,-15.0757	0/1:46:8,37:8:288:37:1332:-53.416,0,-5.73762	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.51525	0/1:29:16,13:16:576:13:468:-17.0313,0,-33.3602	0/1:26:9,17:9:324:17:593:-24.8459,0,-15.9759	1/1:76:0,76:0:0:76:2728:-149.495,-22.8783,0	1/1:76:0,75:0:0:75:2696:-157.822,-22.5773,0	0/1:36:7,29:7:252:29:1036:-51.3666,0,-8.5732	0/1:46:19,27:19:684:27:960:-47.3962,0,-40.8593	1/1:75:0,75:0:0:75:2696:-133.387,-22.5773,0	0/1:72:30,41:30:1080:41:1463:-64.5083,0,-61.0994	1/1:76:0,76:0:0:76:2736:-162.415,-22.8783,0	0/1:43:14,29:14:487:29:1029:-47.8783,0,-25.1367	0/1:77:26,51:26:932:51:1836:-92.0036,0,-51.4288	1/1:4:0,4:0:0:4:140:-8.74767,-1.20412,0	0/1:43:21,22:21:756:22:792:-26.1101,0,-39.0436	1/1:21:1,20:1:36:20:701:-42.1729,-2.75482,0	1/1:12:0,12:0:0:12:428:-21.312,-3.61236,0	1/1:55:1,54:1:36:54:1928:-102.537,-13.6539,0	1/1:54:0,54:0:0:54:1932:-114.368,-16.2556,0	.:.:.:.:.:.:.:.	0/1:8:1,7:1:36:7:248:-12.7932,0,-0.779384	1/1:58:0,58:0:0:58:2088:-112.946,-17.4597,0	1/1:102:0,102:0:0:102:3672:-215.482,-30.7051,0	1/1:6:0,6:0:0:6:201:-12.643,-1.80618,0	1/1:44:0,44:0:0:44:1584:-100.296,-13.2453,0	0/1:105:24,81:24:864:81:2912:-140.844,0,-34.2834	0/1:37:12,25:12:432:25:900:-38.2876,0,-17.5366	1/1:34:0,34:0:0:34:1220:-72.5923,-10.235,0	1/1:120:0,120:0:0:120:4302:-250.465,-36.1236,0	0/1:63:42,21:42:1512:21:756:-26.2167,0,-95.2652	1/1:31:0,31:0:0:31:1097:-60.6282,-9.33193,0	0/1:33:4,29:4:144:29:1040:-41.1155,0,-0.189958	1/1:85:0,85:0:0:85:3056:-194.134,-25.5876,0	1/1:25:0,25:0:0:25:900:-52.8491,-7.52575,0	0/1:56:24,32:24:856:32:1152:-41.7758,0,-42.6716	0/1:25:15,10:15:540:10:360:-10.5772,0,-29.6866	1/1:109:0,109:0:0:109:3895:-211.82,-32.8123,0	0/1:50:25,25:25:896:25:896:-37.7931,0,-51.7369	0/1:36:15,21:15:536:21:752:-27.2099,0,-25.8867	0/1:47:17,30:17:612:30:1076:-39.2222,0,-27.8283	1/1:10:0,10:0:0:10:360:-18.1029,-3.0103,0	0/1:44:9,35:9:324:35:1256:-54.9255,0,-10.5573	1/1:32:0,32:0:0:32:1148:-56.9451,-9.63296,0	1/1:131:0,131:0:0:131:4704:-274.56,-39.4349,0	0/1:62:14,48:14:504:48:1728:-82.4376,0,-20.1288	1/1:64:0,64:0:0:64:2300:-134.462,-19.2659,0	1/1:63:6,57:6:216:57:2035:-103.706,-2.16493,0	1/1:73:8,65:8:288:65:2332:-116.035,-0.384866,0	0/1:20:6,14:6:216:14:504:-19.2439,0,-8.86581	1/1:85:0,85:0:0:85:3056:-151.666,-25.5876,0	1/1:67:0,67:0:0:67:2412:-119.357,-20.169,0	0/1:28:7,21:7:252:21:756:-33.051,0,-9.84428	0/1:64:14,50:14:500:50:1796:-79.1723,0,-15.3274	0/1:34:12,22:12:432:22:784:-36.3359,0,-22.3549	1/1:23:0,23:0:0:23:828:-46.5556,-6.92369,0	1/1:75:0,75:0:0:75:2686:-159.486,-22.5773,0
chr01	34210629	.	C	T	3942.92	PASS	AB=0.327092;ABP=446.81;AC=42;AF=0.228261;AN=184;AO=587;CIGAR=1X;DP=4986;DPB=4986;DPRA=0.728854;EPP=1277.66;EPPR=9503.27;GTI=14;LEN=1;MEANALT=1;MQM=30.3714;MQMR=22.7765;NS=92;NUMALT=1;ODDS=0.195967;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20960;QR=156974;RO=4399;RPL=587;RPP=1277.66;RPPR=9503.27;RPR=0;RUN=1;SAF=0;SAP=1277.66;SAR=587;SRF=0;SRP=9555.32;SRR=4399;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:13,8:13:453:8:288:-13.4907,0,-16.9335	0/1:63:43,20:43:1495:20:716:-30.1653,0,-57.1846	0/0:72:72,0:72:2580:0:0:0,-21.6742,-127.465	0/0:63:63,0:63:2249:0:0:0,-18.9649,-134.547	0/1:40:26,14:26:932:14:493:-23.9646,0,-38.6204	0/1:23:12,11:12:432:11:396:-20.4383,0,-14.76	0/1:56:38,18:38:1353:18:648:-32.2289,0,-65.125	0/0:59:59,0:59:2116:0:0:0,-17.7608,-104.212	0/1:43:35,8:35:1230:8:288:-6.86802,0,-47.2903	0/1:65:38,27:38:1360:27:972:-54.9638,0,-61.5936	0/0:48:48,0:48:1728:0:0:0,-14.4494,-100.681	0/0:67:67,0:67:2381:0:0:0,-20.169,-119.273	0/0:78:78,0:78:2804:0:0:0,-23.4803,-140.488	0/1:42:35,7:35:1252:7:252:-5.93443,0,-54.4389	0/0:61:61,0:61:2173:0:0:0,-18.3628,-129.43	0/0:65:65,0:65:2332:0:0:0,-19.5669,-127.008	0/0:67:67,0:67:2404:0:0:0,-20.169,-121.812	0/0:55:55,0:55:1938:0:0:0,-16.5566,-96.9653	0/0:48:48,0:48:1694:0:0:0,-14.4494,-85.0676	0/1:49:28,21:28:1008:21:756:-43.7327,0,-45.4686	0/1:65:52,13:52:1834:13:468:-15.1658,0,-81.9151	0/0:30:30,0:30:1050:0:0:0,-9.0309,-67.0072	0/0:42:42,0:42:1504:0:0:0,-12.6433,-88.6793	0/1:55:48,7:48:1728:7:252:-1.86876,0,-77.9738	0/0:50:50,0:50:1796:0:0:0,-15.0515,-98.3511	0/0:159:159,0:159:5621:0:0:0,-47.8638,-357.184	0/0:130:130,0:130:4645:0:0:0,-39.1339,-251.551	0/0:33:33,0:33:1184:0:0:0,-9.93399,-64.241	0/0:108:108,0:108:3846:0:0:0,-32.5112,-244.844	0/0:83:81,2:81:2912:2:72:0,-19.4702,-152.162	0/0:50:50,0:50:1713:0:0:0,-15.0515,-103.261	0/0:3:3,0:3:108:0:0:0,-0.90309,-6.11282	1/1:9:0,9:0:0:9:324:-22.7368,-2.70927,0	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-9.15093	0/1:7:6,1:6:216:1:36:-0.628992,0,-8.83412	0/0:185:185,0:185:6626:0:0:0,-55.6905,-424.096	0/1:46:35,11:35:1260:11:396:-15.1803,0,-54.8746	0/1:45:37,8:37:1332:8:288:-6.01061,0,-54.3619	1/1:2:0,2:0:0:2:72:-5.51525,-0.60206,0	0/1:29:13,16:13:468:16:576:-33.3602,0,-17.0313	0/1:26:17,9:17:612:9:324:-15.9759,0,-25.1719	0/0:77:77,0:77:2760:0:0:0,-23.1793,-151.104	0/0:78:78,0:78:2796:0:0:0,-23.4803,-165.396	0/1:37:30,7:30:1080:7:252:-8.27217,0,-54.2454	0/1:47:28,19:28:993:19:680:-40.3772,0,-49.0279	0/0:75:75,0:75:2681:0:0:0,-22.5772,-133.169	0/1:73:43,30:43:1525:30:1076:-60.6624,0,-68.761	0/0:77:77,0:77:2715:0:0:0,-23.1793,-163.409	0/1:43:28,15:28:1008:15:536:-28.4565,0,-45.8824	0/1:77:51,26:51:1806:26:917:-50.4267,0,-90.9624	0/0:4:4,0:4:144:0:0:0,-1.20412,-8.78206	0/1:43:22,21:22:788:21:756:-39.0436,0,-26.0959	0/0:20:20,0:20:716:0:0:0,-6.0206,-47.1744	0/0:12:12,0:12:432:0:0:0,-3.61236,-21.3263	0/0:57:56,1:56:1981:1:36:0,-14.2559,-106.159	0/0:55:55,0:55:1980:0:0:0,-16.5566,-115.802	.:.:.:.:.:.:.:.	0/1:8:7,1:7:252:1:36:-0.779384,0,-12.8272	0/0:60:60,0:60:2118:0:0:0,-18.0618,-117.499	0/0:103:103,0:103:3681:0:0:0,-31.0061,-218.201	0/0:6:6,0:6:216:0:0:0,-1.80618,-13.0544	0/0:43:43,0:43:1544:0:0:0,-12.9443,-98.9008	0/1:106:82,24:82:2918:24:845:-32.949,0,-141.898	0/1:37:25,12:25:881:12:432:-17.5366,0,-37.9623	0/0:34:34,0:34:1216:0:0:0,-10.235,-72.8417	0/0:121:121,0:121:4356:0:0:0,-36.4246,-252.66	0/1:62:20,42:20:720:42:1497:-94.6752,0,-24.3815	0/0:32:32,0:32:1144:0:0:0,-9.63296,-62.8741	0/1:33:29,4:29:1025:4:144:-0.189958,0,-41.0054	0/0:85:85,0:85:3056:0:0:0,-25.5875,-194.134	0/0:25:25,0:25:885:0:0:0,-7.52575,-52.4434	0/1:56:32,24:32:1148:24:864:-42.8191,0,-41.7616	0/1:25:10,15:10:360:15:540:-29.6866,0,-10.5772	0/0:113:113,0:113:4026:0:0:0,-34.0164,-218.753	0/1:50:25,25:25:896:25:888:-51.4559,0,-37.7931	0/1:38:22,16:22:784:16:561:-27.1737,0,-28.3925	0/1:47:30,17:30:1076:17:604:-27.6806,0,-39.2222	0/0:10:10,0:10:360:0:0:0,-3.0103,-18.1029	0/1:44:35,9:35:1256:9:324:-10.5573,0,-54.9255	0/0:33:33,0:33:1158:0:0:0,-9.93399,-59.1046	0/0:130:130,0:130:4630:0:0:0,-39.1339,-272.915	0/1:61:47,14:47:1692:14:489:-19.534,0,-81.3934	0/0:65:65,0:65:2291:0:0:0,-19.5669,-135.76	0/0:63:57,6:57:2048:6:216:0,-2.16493,-103.752	0/0:74:66,8:66:2353:8:284:0,-0.827726,-117.908	0/1:21:15,6:15:532:6:216:-8.56478,0,-20.3566	0/0:86:86,0:86:3092:0:0:0,-25.8886,-153.456	0/0:68:68,0:68:2440:0:0:0,-20.47,-122.57	0/1:28:21,7:21:756:7:248:-9.76972,0,-33.051	0/1:64:50,14:50:1796:14:500:-15.3274,0,-80.4487	0/1:34:22,12:22:784:12:402:-21.1037,0,-36.3359	0/0:25:25,0:25:896:0:0:0,-7.52575,-51.1881	0/0:74:74,0:74:2634:0:0:0,-22.2762,-156.891
chr01	34218108	.	T	C	281200	PASS	AB=0.483711;ABP=16.5217;AC=142;AF=0.763441;AN=186;AO=10429;CIGAR=1X;DP=13474;DPB=13474;DPRA=0;EPP=22649.3;EPPR=6608.63;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.9281;MQMR=59.9924;NS=93;NUMALT=1;ODDS=10.402;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=369882;QR=108801;RO=3042;RPL=4265;RPP=753.875;RPPR=272.122;RPR=6164;RUN=1;SAF=4265;SAP=753.875;SAR=6164;SRF=1214;SRP=272.122;SRR=1828;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:36,22:36:1296:22:792:-54.1459,0,-99.4842	0/1:164:94,70:94:3372:70:2456:-171.921,0,-254.326	1/1:176:0,176:0:0:176:6270:-564.326,-52.9813,0	1/1:342:0,342:0:0:342:12101:-1088.94,-102.952,0	0/1:47:32,15:32:1144:15:540:-34.7181,0,-89.1211	0/1:50:33,17:33:1173:17:599:-39.1866,0,-90.8241	0/1:103:52,51:52:1868:51:1827:-133.705,0,-137.393	1/1:229:0,229:0:0:229:8131:-731.49,-68.9359,0	0/1:151:65,86:65:2309:86:3040:-228.315,0,-162.614	0/1:211:104,107:104:3728:107:3802:-278.862,0,-272.203	1/1:116:1,114:1:36:114:4033:-359.559,-31.38,0	1/1:168:0,168:0:0:168:5947:-535.235,-50.573,0	1/1:129:0,129:0:0:129:4561:-410.651,-38.8329,0	0/1:122:61,61:61:2176:61:2134:-155.601,0,-159.381	1/1:129:0,129:0:0:129:4584:-412.724,-38.8329,0	1/1:104:0,104:0:0:104:3663:-329.876,-31.3071,0	1/1:120:0,120:0:0:120:4258:-383.399,-36.1236,0	1/1:83:0,83:0:0:83:2933:-264.194,-24.9855,0	1/1:69:0,69:0:0:69:2423:-218.323,-20.7711,0	0/1:188:95,93:95:3400:93:3315:-241.974,0,-249.621	0/1:241:114,127:114:4054:127:4516:-334.056,0,-292.498	1/1:100:0,100:0:0:100:3560:-320.606,-30.103,0	1/1:122:0,122:0:0:122:4329:-389.784,-36.7257,0	0/1:165:90,75:90:3228:75:2649:-188.982,0,-241.072	1/1:72:1,71:1:36:71:2536:-224.893,-18.0759,0	1/1:327:2,325:2:72:325:11563:-1033.7,-91.6001,0	1/1:395:0,395:0:0:395:14023:-1261.81,-118.907,0	1/1:94:0,94:0:0:94:3312:-298.071,-28.2968,0	1/1:273:1,272:1:32:272:9700:-869.751,-78.9819,0	1/1:169:1,168:1:36:168:5983:-534.974,-47.2758,0	1/1:198:0,198:0:0:198:7020:-631.863,-59.6039,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:16:12,4:12:423:4:144:-8.49714,0,-33.5886	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:8:4,4:4:136:4:144:-10.9054,0,-10.1673	1/1:432:2,430:2:72:430:15272:-1367.37,-123.208,0	0/1:205:98,107:98:3499:107:3757:-276.62,0,-253.41	0/1:89:46,43:46:1644:43:1514:-109.76,0,-121.457	.:.:.:.:.:.:.:.	0/1:213:113,100:113:4035:100:3588:-259.007,0,-299.219	0/1:55:32,23:32:1144:23:817:-57.2941,0,-86.7129	1/1:119:0,119:0:0:119:4226:-380.516,-35.8226,0	1/1:164:1,163:1:36:163:5750:-514.021,-45.7706,0	0/1:119:62,57:62:2224:57:2001:-144.511,0,-164.602	0/1:121:66,55:66:2355:55:1976:-141.69,0,-175.784	1/1:118:0,118:0:0:118:4167:-375.211,-35.5215,0	0/1:219:117,102:117:4193:102:3637:-261.609,0,-311.623	1/1:166:0,166:0:0:166:5888:-529.943,-49.971,0	0/1:298:140,158:140:5012:158:5630:-417.113,0,-361.52	0/1:114:37,77:37:1324:77:2735:-212.064,0,-85.1447	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:240:138,102:138:4952:102:3628:-254.477,0,-373.581	1/1:80:1,79:1:36:79:2805:-249.091,-20.4841,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:172:1,171:1:36:171:6038:-539.925,-48.1789,0	1/1:75:0,75:0:0:75:2669:-239.897,-22.5773,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:26:10,16:10:360:16:576:-44.3482,0,-24.9175	1/1:119:0,119:0:0:119:4210:-379.074,-35.8226,0	1/1:174:0,174:0:0:174:6124:-551.266,-52.3792,0	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	1/1:312:0,312:0:0:312:11005:-989.863,-93.9214,0	0/1:318:167,151:167:5979:151:5344:-385.351,0,-442.261	0/1:132:74,58:74:2644:58:2045:-144.583,0,-198.471	1/1:115:0,115:0:0:115:4093:-368.556,-34.6185,0	1/1:235:3,232:3:108:232:8236:-731.174,-60.6669,0	0/1:175:111,64:111:3954:64:2270:-151.881,0,-303.369	1/1:62:0,62:0:0:62:2219:-199.974,-18.6639,0	0/1:81:38,43:38:1356:43:1536:-114.15,0,-97.9571	1/1:132:0,132:0:0:132:4665:-419.979,-39.736,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:123:52,71:52:1864:71:2531:-191.014,0,-131.013	0/1:121:79,41:79:2802:41:1436:-93.2047,0,-216.095	1/1:247:0,247:0:0:247:8757:-788.124,-74.3544,0	0/1:184:98,86:98:3516:86:3092:-223.117,0,-261.26	0/1:104:53,51:53:1887:51:1811:-131.963,0,-138.801	0/1:213:118,95:118:4228:95:3362:-238.675,0,-316.58	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:190:87,102:87:3120:102:3640:-270.677,0,-223.901	1/1:192:2,190:2:72:190:6719:-597.882,-50.961,0	1/1:343:0,343:0:0:343:12207:-1098.48,-103.253,0	0/1:151:74,77:74:2664:77:2709:-198.596,0,-194.549	1/1:113:1,112:1:36:112:3945:-351.64,-30.4181,0	0/1:146:71,75:71:2520:75:2675:-196.959,0,-183.1	0/1:307:139,168:139:4984:168:5948:-443.014,0,-356.291	0/1:60:24,36:24:860:36:1292:-98.522,0,-59.66	1/1:157:0,157:0:0:157:5519:-496.821,-47.2617,0	1/1:152:0,152:0:0:152:5390:-484.205,-45.7566,0	0/1:48:28,20:28:1004:20:697:-48.6012,0,-76.2264	0/1:136:66,70:66:2363:70:2455:-180.264,0,-171.988	0/1:124:81,43:81:2895:43:1512:-99.0427,0,-223.458	1/1:200:0,200:0:0:200:7123:-641.125,-60.206,0	1/1:237:0,237:0:0:237:8421:-757.899,-71.3441,0
chr01	34218134	.	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chr01	34218755	.	T	C	323492	PASS	AB=0.477885;ABP=31.535;AC=142;AF=0.763441;AN=186;AO=11965;CIGAR=1X;DP=15495;DPB=15495;DPRA=0;EPP=105.914;EPPR=6.12272;GTI=1;LEN=1;MEANALT=1.11828;MQM=59.8517;MQMR=59.9935;NS=93;NUMALT=1;ODDS=2.52694;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=421886;QR=125559;RO=3517;RPL=11922;RPP=25612.5;RPPR=7475.94;RPR=43;RUN=1;SAF=6316;SAP=83.7511;SAR=5649;SRF=1775;SRP=3.68267;SRR=1742;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:29,51:29:1044:51:1795:-137.744,0,-70.1924	0/1:64:26,38:26:913:38:1353:-102.786,0,-63.2181	1/1:139:0,139:0:0:139:4947:-445.235,-41.8432,0	1/1:409:0,408:0:0:408:14259:-1282.8,-122.82,0	0/1:151:70,81:70:2508:81:2884:-214.333,0,-180.517	0/1:58:33,25:33:1180:25:892:-63.1318,0,-89.0483	0/1:217:108,108:108:3865:108:3749:-272.15,0,-282.661	1/1:109:0,109:0:0:109:3884:-349.74,-32.8123,0	0/1:143:76,67:76:2721:67:2374:-170.844,0,-202.084	0/1:168:84,84:84:2991:84:2979:-217.771,0,-218.849	1/1:125:0,125:0:0:125:4366:-392.89,-37.6288,0	1/1:122:0,122:0:0:122:4357:-392.297,-36.7257,0	1/1:85:0,85:0:0:85:3020:-272.025,-25.5876,0	0/1:132:64,68:64:2288:68:2404:-176.882,0,-166.446	1/1:168:0,168:0:0:168:5926:-533.449,-50.573,0	1/1:95:0,95:0:0:95:3358:-302.431,-28.5979,0	1/1:35:0,35:0:0:35:1252:-112.969,-10.5361,0	1/1:33:0,33:0:0:33:1184:-106.832,-9.93399,0	1/1:44:0,44:0:0:44:1580:-142.459,-13.2453,0	0/1:370:170,200:170:6039:200:7022:-520.659,0,-432.233	0/1:272:152,120:152:5433:120:4273:-302.865,0,-407.218	1/1:119:0,119:0:0:119:4191:-377.373,-35.8226,0	1/1:180:1,179:1:27:179:6288:-563.112,-51.4856,0	0/1:169:92,77:92:3296:77:2712:-193.443,0,-245.985	1/1:132:0,132:0:0:132:4685:-421.809,-39.736,0	1/1:591:1,587:1:36:587:20522:-1842.9,-173.767,0	1/1:449:1,448:1:36:448:15890:-1426.05,-131.564,0	1/1:80:0,80:0:0:80:2851:-256.821,-24.0824,0	1/1:392:0,392:0:0:392:13789:-1240.8,-118.004,0	1/1:257:1,256:1:36:256:9049:-810.769,-73.7664,0	1/1:226:0,226:0:0:226:7977:-717.94,-68.0328,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:13:9,4:9:324:4:129:-8.01427,0,-25.5925	1/1:456:0,455:0:0:455:15993:-1438.7,-136.969,0	0/1:164:90,74:90:3200:74:2609:-185.689,0,-238.856	0/1:55:24,31:24:864:31:1112:-83.8063,0,-61.5259	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:292:150,142:150:5376:142:5009:-363.063,0,-396.07	0/1:72:37,35:37:1324:35:1252:-91.3109,0,-97.7879	1/1:347:1,345:1:36:345:12231:-1097.01,-100.918,0	1/1:137:1,135:1:36:135:4722:-421.528,-37.6817,0	0/1:141:82,59:82:2930:59:2082:-145.204,0,-221.488	0/1:171:92,79:92:3292:79:2782:-199.145,0,-245.023	1/1:94:1,93:1:36:93:3304:-293.948,-24.6985,0	0/1:330:174,155:174:6186:155:5464:-392.481,0,-457.441	1/1:210:0,210:0:0:210:7280:-655.251,-63.2163,0	0/1:279:154,125:154:5477:125:4467:-318.21,0,-409.072	0/1:153:74,79:74:2642:79:2678:-195.187,0,-191.968	0/1:26:11,15:11:392:15:531:-40.2928,0,-27.7933	0/1:102:54,48:54:1929:48:1716:-124.021,0,-143.18	1/1:79:0,79:0:0:79:2749:-247.647,-23.7814,0	1/1:19:0,18:0:0:18:648:-58.2839,-5.41854,0	1/1:263:0,263:0:0:263:9367:-842.954,-79.1709,0	1/1:103:0,103:0:0:103:3627:-326.502,-31.0061,0	1/1:18:0,18:0:0:18:623:-56.3931,-5.41854,0	0/1:41:15,26:15:540:26:906:-69.5112,0,-36.5943	1/1:162:0,162:0:0:162:5687:-511.948,-48.7669,0	1/1:206:3,203:3:108:203:7076:-626.807,-51.937,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:281:0,279:0:0:279:9761:-878.17,-83.9874,0	0/1:462:263,199:263:9344:199:6953:-486.739,0,-701.854	0/1:170:79,91:79:2824:91:3232:-239.929,0,-203.22	1/1:158:0,158:0:0:158:5601:-504.21,-47.5627,0	1/1:244:0,244:0:0:244:8646:-778.133,-73.4513,0	0/1:261:180,81:180:6432:81:2780:-171.864,0,-500.397	1/1:86:1,85:1:36:85:3028:-269.137,-22.2903,0	0/1:45:27,18:27:972:18:644:-44.7305,0,-74.2516	1/1:137:0,137:0:0:137:4821:-434.048,-41.2411,0	1/1:43:0,43:0:0:43:1518:-136.912,-12.9443,0	0/1:86:51,35:51:1832:35:1230:-85.1065,0,-139.272	0/1:133:70,63:70:2512:63:2260:-163.626,0,-186.292	1/1:359:0,359:0:0:359:12704:-1142.65,-108.07,0	0/1:310:156,154:156:5557:154:5413:-393.984,0,-406.934	0/1:106:54,52:54:1940:52:1854:-135.204,0,-142.967	0/1:89:48,41:48:1720:41:1472:-105.984,0,-128.294	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:198:94,104:94:3376:104:3669:-270.811,0,-244.451	1/1:67:0,67:0:0:67:2388:-215.106,-20.169,0	1/1:818:1,816:1:36:816:28624:-2571.63,-242.683,0	0/1:198:96,102:96:3401:102:3596:-264.245,0,-246.679	1/1:118:1,117:1:36:117:4120:-367.385,-31.9233,0	0/1:156:67,89:67:2404:89:3135:-235.413,0,-169.656	0/1:340:176,164:176:6277:164:5823:-421.833,0,-462.672	0/1:41:23,18:23:813:18:648:-46.3015,0,-61.1469	1/1:72:0,72:0:0:72:2592:-233.528,-21.6742,0	1/1:53:0,53:0:0:53:1895:-170.816,-15.9546,0	0/1:89:42,47:42:1508:47:1676:-124.336,0,-109.223	0/1:170:81,89:81:2900:89:3156:-233.072,0,-210.061	0/1:153:104,49:104:3706:49:1735:-110.374,0,-287.685	1/1:138:0,138:0:0:138:4846:-436.167,-41.5421,0	1/1:300:0,300:0:0:300:10630:-956.576,-90.309,0
chr01	34218773	.	C	T	122550	PASS	AB=0.468634;ABP=30.5273;AC=142;AF=0.763441;AN=186;AO=5723;CIGAR=1X;DP=7436;DPB=7436;DPRA=0;EPP=12430.3;EPPR=3718.4;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.6755;MQMR=59.9936;NS=93;NUMALT=1;ODDS=0.685029;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204873;QR=61128;RO=1711;RPL=5723;RPP=12430.3;RPPR=3718.4;RPR=0;RUN=1;SAF=0;SAP=12430.3;SAR=5723;SRF=0;SRP=3718.4;SRR=1711;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:28,50:28:1008:50:1800:-138.785,0,-67.556	0/1:64:25,39:25:881:39:1400:-107.017,0,-60.3399	1/1:137:0,136:0:0:136:4880:-438.91,-40.9401,0	1/1:121:0,121:0:0:121:4340:-390.725,-36.4246,0	0/1:51:25,26:25:884:26:929:-68.569,0,-64.5258	0/1:57:32,25:32:1140:25:888:-63.0721,0,-85.7505	0/1:69:30,39:30:1060:39:1400:-105.397,0,-74.9402	1/1:111:0,111:0:0:111:3984:-358.719,-33.4143,0	0/1:143:75,68:75:2679:68:2436:-176.242,0,-198.307	0/1:56:24,32:24:849:32:1152:-87.1325,0,-59.8701	1/1:46:0,46:0:0:46:1630:-146.896,-13.8474,0	1/1:122:0,122:0:0:122:4388:-395.084,-36.7257,0	1/1:85:0,85:0:0:85:3040:-273.813,-25.5876,0	0/1:34:15,19:15:540:19:684:-51.6553,0,-38.7015	1/1:87:0,87:0:0:87:3116:-280.665,-26.1896,0	1/1:47:0,47:0:0:47:1673:-150.847,-14.1484,0	1/1:36:0,36:0:0:36:1292:-116.564,-10.8371,0	1/1:35:0,35:0:0:35:1260:-113.669,-10.5361,0	1/1:46:0,46:0:0:46:1647:-148.301,-13.8474,0	0/1:156:77,79:77:2764:79:2836:-208.501,0,-202.04	0/1:148:87,61:87:3104:61:2192:-152.991,0,-235.036	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:71:0,71:0:0:71:2544:-229.018,-21.3731,0	0/1:26:14,12:14:500:12:432:-31.3851,0,-37.5094	1/1:67:0,67:0:0:67:2400:-216.252,-20.169,0	1/1:193:0,192:0:0:192:6889:-619.84,-57.7978,0	1/1:263:0,263:0:0:263:9419:-847.568,-79.1709,0	1/1:40:0,40:0:0:40:1436:-129.528,-12.0412,0	1/1:137:0,137:0:0:137:4919:-442.848,-41.2411,0	1/1:83:0,83:0:0:83:2948:-265.347,-24.9855,0	1/1:95:0,95:0:0:95:3373:-303.765,-28.5979,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:17:10,7:10:360:7:248:-17.5467,0,-27.6268	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	1/1:219:0,219:0:0:219:7827:-704.43,-65.9256,0	0/1:72:36,36:36:1292:36:1296:-95.2698,0,-94.9096	0/1:57:24,33:24:864:33:1184:-89.698,0,-60.9239	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:94:52,42:52:1868:42:1504:-107.358,0,-140.102	0/1:38:23,15:23:811:15:540:-37.4974,0,-61.8708	1/1:133:0,133:0:0:133:4735:-426.268,-40.037,0	1/1:61:0,61:0:0:61:2181:-196.519,-18.3628,0	0/1:63:36,27:36:1268:27:972:-68.8284,0,-95.4551	0/1:101:65,36:65:2332:36:1285:-85.5463,0,-179.736	1/1:90:0,90:0:0:90:3240:-291.721,-27.0927,0	0/1:118:69,49:69:2476:49:1753:-122.516,0,-187.572	1/1:83:0,83:0:0:83:2969:-267.427,-24.9855,0	0/1:74:39,35:39:1396:35:1256:-91.0667,0,-103.663	0/1:38:20,18:20:716:18:644:-46.8338,0,-53.3286	0/1:13:6,7:6:216:7:252:-19.1132,0,-15.8771	0/1:101:53,48:53:1892:48:1720:-124.681,0,-140.154	1/1:41:0,41:0:0:41:1449:-130.703,-12.3422,0	1/1:19:0,19:0:0:19:684:-61.8821,-5.71957,0	1/1:125:0,125:0:0:125:4455:-401.081,-37.6288,0	1/1:36:0,36:0:0:36:1288:-116.159,-10.8371,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:15:4,11:4:144:11:388:-30.7419,0,-8.79817	1/1:65:0,65:0:0:65:2340:-210.85,-19.567,0	1/1:89:0,89:0:0:89:3199:-288.105,-26.7917,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:93:0,93:0:0:93:3329:-299.826,-27.9958,0	0/1:134:83,51:83:2972:51:1828:-124.452,0,-227.375	0/1:49:25,24:25:892:24:864:-63.3321,0,-65.8446	1/1:62:0,62:0:0:62:2219:-199.81,-18.6639,0	1/1:129:0,129:0:0:129:4594:-413.59,-38.8329,0	0/1:144:102,42:102:3668:42:1497:-91.6751,0,-286.974	1/1:38:0,38:0:0:38:1358:-122.511,-11.4391,0	0/1:45:27,18:27:952:18:642:-44.5599,0,-72.4488	1/1:45:0,45:0:0:45:1616:-145.728,-13.5464,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:85:51,34:51:1819:34:1220:-84.5065,0,-138.403	0/1:133:70,63:70:2500:63:2256:-163.266,0,-185.215	1/1:188:0,188:0:0:188:6709:-603.36,-56.5936,0	0/1:105:55,50:55:1964:50:1788:-129.589,0,-145.427	0/1:108:53,55:53:1883:55:1953:-143.507,0,-137.237	0/1:88:47,41:47:1684:41:1461:-105.293,0,-125.356	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:95:41,54:41:1461:54:1929:-145.285,0,-103.186	1/1:71:0,71:0:0:71:2501:-225.302,-21.3731,0	1/1:297:0,297:0:0:297:10652:-958.518,-89.4059,0	0/1:67:33,34:33:1180:34:1224:-90.2957,0,-86.339	1/1:63:0,63:0:0:63:2253:-203.029,-18.9649,0	0/1:50:23,27:23:819:27:964:-72.0206,0,-58.9801	0/1:167:87,80:87:3104:80:2868:-208.083,0,-229.316	0/1:41:22,19:22:783:19:684:-49.5399,0,-58.4507	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:55:0,55:0:0:55:1976:-178.058,-16.5567,0	0/1:33:15,18:15:536:18:644:-48.3548,0,-38.6408	0/1:92:42,50:42:1512:50:1784:-133.128,0,-108.68	0/1:77:54,23:54:1923:23:828:-51.6625,0,-150.167	1/1:65:0,65:0:0:65:2324:-209.286,-19.567,0	1/1:161:0,161:0:0:161:5780:-520.271,-48.4658,0
chr01	34222406	.	ATTG	GTTA,GTTG	199933	PASS	AB=0.490115,0.501594;ABP=5.67202,3.07954;AC=141,45;AF=0.758065,0.241935;AN=186;AO=5816,1582;CIGAR=1X2M1X,1X3M;DP=7442;DPB=7442.75;DPRA=40.4348,0.893938;EPP=618.556,224.83;EPPR=3.0103;GTI=2;LEN=4,1;MEANALT=1.95652,2.5;MQM=59.7376,59.9697;MQMR=60;NS=93;NUMALT=2;ODDS=2.75939;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=49.5,49.5;PQR=0;PRO=0;QA=203524,56329;QR=144;RO=4;RPL=5803,1582;RPP=12519.6,3438.28;RPPR=5.18177;RPR=13,0;RUN=1,1;SAF=3537,992;SAP=593.879,224.83;SAR=2279,590;SRF=3;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,20,19:0:0:20,19:694,676:-111.496,-55.089,-49.0684,-56.4,0,-50.6804	1/2:73:0,35,38:0:0:35,38:1224,1346:-209.566,-110,-99.4635,-99.9178,0,-88.4786	1/1:83:0,83,0:0:0:83,0:2900,0:-261.161,-24.9855,0,-261.161,-24.9855,-261.161	1/1:100:0,100,0:0:0:100,0:3485,0:-313.856,-30.103,0,-313.856,-30.103,-313.856	1/2:39:0,18,21:0:0:18,21:633,752:-113.208,-61.6846,-56.2661,-51.8783,0,-45.5567	1/2:36:0,16,20:0:0:16,20:562,720:-104.793,-59.0631,-54.2467,-46.0847,0,-40.0641	1/2:101:0,55,45:0:0:55,45:1941,1603:-288.701,-130.653,-114.097,-158.043,0,-144.496	1/1:75:0,73,0:0:0:73,0:2539,0:-228.403,-21.9752,0,-228.403,-21.9752,-228.403	1/2:75:0,38,37:0:0:38,37:1324,1294:-213.285,-105.619,-94.1798,-108.015,0,-96.8771	1/2:69:0,35,34:0:0:35,34:1233,1207:-199.084,-98.7003,-88.1642,-100.737,0,-90.5019	1/1:91:0,91,0:0:0:91,0:3124,0:-281.386,-27.3937,0,-281.386,-27.3937,-281.386	1/1:188:1,186,0:1:36:186,0:6503,0:-581.741,-53.0226,0,-582.042,-55.9916,-584.979	1/1:151:0,150,0:0:0:150,0:5266,0:-473.794,-45.1545,0,-473.794,-45.1545,-473.794	1/2:113:0,57,56:0:0:57,56:1993,1982:-323.795,-161.796,-144.637,-162.351,0,-145.493	1/1:144:0,144,0:0:0:144,0:5071,0:-456.511,-43.3483,0,-456.511,-43.3483,-456.511	1/1:151:0,150,0:0:0:150,0:5280,0:-474.915,-45.1545,0,-474.915,-45.1545,-474.915	1/1:117:0,117,0:0:0:117,0:4062,0:-365.757,-35.2205,0,-365.757,-35.2205,-365.757	1/1:103:0,102,0:0:0:102,0:3561,0:-320.094,-30.7051,0,-320.094,-30.7051,-320.094	1/1:86:0,85,1:0:0:85,1:3000,36:-269.858,-25.5876,0,-266.921,-22.2903,-266.62	1/2:53:0,28,24:0:0:28,24:985,860:-150.353,-70.1758,-61.7469,-80.2101,0,-72.9854	1/2:95:0,46,49:0:0:46,49:1597,1724:-270.508,-140.692,-126.844,-130.165,0,-115.415	1/1:19:0,19,0:0:0:19,0:650,0:-58.8184,-5.71957,0,-58.8184,-5.71957,-58.8184	1/1:55:0,54,1:0:0:54,1:1897,36:-170.647,-16.2556,0,-167.709,-12.9584,-167.408	1/2:61:0,32,29:0:0:32,29:1135,1024:-176.214,-83.7427,-74.1098,-92.825,0,-84.0951	1/1:51:0,51,0:0:0:51,0:1798,0:-162.091,-15.3525,0,-162.091,-15.3525,-162.091	1/1:152:0,150,1:0:0:150,1:5222,36:-469.563,-45.1545,0,-466.626,-42.1921,-466.325	1/1:145:0,145,0:0:0:145,0:5111,0:-460.12,-43.6494,0,-460.12,-43.6494,-460.12	1/1:88:0,88,0:0:0:88,0:3069,0:-276.404,-26.4906,0,-276.404,-26.4906,-276.404	1/1:104:0,104,0:0:0:104,0:3650,0:-328.706,-31.3071,0,-328.706,-31.3071,-328.706	1/1:48:0,48,0:0:0:48,0:1685,0:-151.931,-14.4494,0,-151.931,-14.4494,-151.931	1/1:62:0,61,0:0:0:61,0:2140,0:-192.562,-18.3628,0,-192.562,-18.3628,-192.562	1/1:3:0,3,0:0:0:3,0:105,0:-9.79597,-0.90309,0,-9.79597,-0.90309,-9.79597	1/2:6:0,1,5:0:0:1,5:36,180:-17.9843,-15.0469,-14.7459,-3.29724,0,-1.79209	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:35,0:-3.42101,-0.30103,0,-3.42101,-0.30103,-3.42101	1/2:5:0,2,3:0:0:2,3:72,104:-14.6799,-8.79971,-8.19765,-6.23466,0,-5.33157	1/1:372:0,372,0:0:0:372,0:12997,0:-1169.55,-111.983,0,-1169.55,-111.983,-1169.55	1/2:18:0,9,9:0:0:9,9:306,324:-51.6068,-26.7966,-24.0873,-25.1601,0,-22.4508	1/2:103:0,60,41:0:0:60,41:2089,1472:-290.031,-120.17,-102.108,-169.951,0,-157.608	1/2:4:0,3,1:0:0:3,1:106,36:-11.9251,-3.29724,-2.39415,-8.98601,0,-8.68498	1/2:80:0,42,38:0:0:42,38:1455,1364:-229.864,-111.622,-98.9783,-118.595,0,-107.156	1/2:57:0,31,26:0:0:31,26:1087,932:-164.822,-76.3721,-67.0401,-88.8045,0,-80.9777	1/1:92:0,91,0:0:0:91,0:3187,0:-286.733,-27.3937,0,-286.733,-27.3937,-286.733	1/1:138:0,137,0:0:0:137,0:4723,0:-424.88,-41.2411,0,-424.88,-41.2411,-424.88	1/2:131:0,70,59:0:0:70,59:2456,2090:-370.043,-170.249,-149.176,-199.787,0,-182.027	1/2:50:0,19,31:0:0:19,31:656,1107:-143.897,-90.6082,-84.8887,-53.638,0,-44.306	1/1:24:0,24,0:0:0:24,0:843,0:-76.1884,-7.22472,0,-76.1884,-7.22472,-76.1884	1/2:78:0,43,35:0:0:43,35:1519,1260:-226.868,-103.169,-90.2247,-124.056,0,-113.52	1/1:62:0,62,0:0:0:62,0:2181,0:-196.553,-18.6639,0,-196.553,-18.6639,-196.553	1/2:73:0,30,41:0:0:30,41:1059,1463:-205.507,-119.273,-110.242,-86.2388,0,-73.8966	1/2:87:0,45,41:0:0:45,41:1599,1449:-248.459,-118.158,-104.612,-130.45,0,-118.107	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:47:0,24,23:0:0:24,23:844,812:-135.17,-66.4767,-59.2519,-69.0454,0,-62.1217	1/1:31:0,31,0:0:0:31,0:1091,0:-98.4938,-9.33193,0,-98.4938,-9.33193,-98.4938	1/1:7:0,7,0:0:0:7,0:245,0:-22.3905,-2.10721,0,-22.3905,-2.10721,-22.3905	1/1:51:0,51,0:0:0:51,0:1790,0:-161.372,-15.3525,0,-161.372,-15.3525,-161.372	1/1:35:0,35,0:0:0:35,0:1236,0:-111.542,-10.5361,0,-111.542,-10.5361,-111.542	1/1:4:0,4,0:0:0:4,0:143,0:-13.2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chr01	34292390	.	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chr01	34350941	.	C	A	94620.5	PASS	AB=0.372242;ABP=510.693;AC=141;AF=0.75;AN=188;AO=4926;CIGAR=1X;DP=7203;DPB=7203;DPRA=77.4409;EPP=10682.3;EPPR=4921.41;GTI=6;LEN=1;MEANALT=1.04301;MQM=45.7621;MQMR=59.5059;NS=94;NUMALT=1;ODDS=0.782619;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176897;QR=80665;RO=2273;RPL=4926;RPP=10699.7;RPPR=4938.77;RPR=0;RUN=1;SAF=2;SAP=10682.3;SAR=4924;SRF=2;SRP=4921.41;SRR=2271;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:34,20:34:1193:20:711:-46.5184,0,-91.4174	0/1:119:75,44:75:2684:44:1584:-106.574,0,-205.982	1/1:87:1,86:1:36:86:3096:-273.186,-22.5913,0	1/1:152:1,151:1:36:151:5424:-439.545,-42.1583,0	0/1:47:31,16:31:1100:16:572:-37.5716,0,-85.1619	0/1:65:52,13:52:1814:13:464:-22.4986,0,-143.968	0/1:109:58,51:58:2076:51:1824:-120.108,0,-153.979	1/1:68:0,68:0:0:68:2429:-218.275,-20.47,0	0/1:64:40,24:40:1424:24:864:-58.4886,0,-109.192	0/1:85:46,39:46:1639:39:1400:-89.0755,0,-122.193	1/1:63:0,63:0:0:63:2268:-184.886,-18.9649,0	1/1:61:0,61:0:0:61:2187:-196.581,-18.3628,0	1/1:65:0,65:0:0:65:2340:-208.229,-19.567,0	0/1:125:78,47:78:2777:47:1688:-112.792,0,-212.041	1/1:65:0,65:0:0:65:2327:-190.949,-19.567,0	1/1:40:0,40:0:0:40:1440:-129.519,-12.0412,0	1/1:66:0,66:0:0:66:2376:-212.673,-19.868,0	1/1:52:0,52:0:0:52:1872:-168.001,-15.6536,0	1/1:39:0,39:0:0:39:1404:-126.095,-11.7402,0	0/1:154:91,63:91:3225:63:2256:-140.63,0,-243.564	0/1:122:68,54:68:2401:54:1944:-137.004,0,-179.131	1/1:43:0,43:0:0:43:1548:-128.302,-12.9443,0	1/1:79:2,77:2:68:77:2772:-223.511,-17.3719,0	0/1:88:54,34:54:1919:34:1224:-83.8774,0,-146.496	1/1:49:0,49:0:0:49:1760:-158.357,-14.7505,0	1/1:197:1,196:1:36:196:7048:-575.273,-55.7046,0	1/1:105:0,105:0:0:105:3772:-338.992,-31.6082,0	1/1:17:0,17:0:0:17:612:-55.3767,-5.11751,0	1/1:220:0,220:0:0:220:7908:-654.079,-66.2266,0	1/1:61:2,59:2:72:59:2120:-181.651,-11.5261,0	1/1:62:0,62:0:0:62:2224:-181.403,-18.6639,0	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	0/1:11:9,2:9:324:2:72:-3.51419,0,-26.1945	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0712,-0.90309,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:143:0,143:0:0:143:5131:-425.09,-43.0473,0	0/1:92:51,41:51:1824:41:1472:-104.932,0,-136.256	0/1:84:49,35:49:1756:35:1260:-88.0509,0,-133.037	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:110:77,33:77:2752:33:1188:-73.9978,0,-214.319	0/1:41:27,14:27:964:14:504:-33.3421,0,-74.7346	1/1:67:0,67:0:0:67:2408:-215.145,-20.169,0	1/1:66:0,66:0:0:66:2358:-190.481,-19.868,0	0/1:62:39,23:39:1377:23:824:-47.9556,0,-105.349	0/1:115:72,43:72:2545:43:1544:-93.5961,0,-194.511	1/1:66:1,65:1:36:65:2336:-206.356,-16.2697,0	0/1:110:66,44:66:2303:44:1584:-95.582,0,-174.304	1/1:88:0,87:0:0:87:3111:-257.231,-26.1896,0	0/1:158:89,69:89:3144:69:2467:-156.514,0,-235.603	0/1:126:68,58:68:2409:58:2069:-134.125,0,-178.898	0/1:7:1,6:1:36:6:216:-16.6601,0,-1.49106	0/1:109:65,44:65:2332:44:1572:-108.485,0,-177.327	1/1:181:0,181:0:0:181:6516:-542.982,-54.4864,0	1/1:7:0,7:0:0:7:252:-22.9903,-2.10721,0	1/1:88:0,88:0:0:88:3160:-284.249,-26.4906,0	1/1:21:0,21:0:0:21:752:-60.54,-6.32163,0	1/1:5:0,5:0:0:5:180:-14.992,-1.50515,0	0/1:18:13,5:13:460:5:180:-9.57923,0,-36.2883	1/1:69:0,69:0:0:69:2476:-222.86,-20.7711,0	1/1:95:0,95:0:0:95:3403:-280,-28.5979,0	0/1:4:2,2:2:72:2:72:-4.21322,0,-5.6326	1/1:117:0,117:0:0:117:4212:-344.278,-35.2205,0	0/1:172:126,46:126:4462:46:1656:-80.4654,0,-349.75	0/1:42:20,22:20:712:22:784:-58.0623,0,-51.7634	1/1:52:0,52:0:0:52:1864:-148.468,-15.6536,0	1/1:121:3,118:3:108:118:4229:-332.953,-26.3495,0	0/1:108:89,19:89:3149:19:680:-25.3569,0,-250.407	1/1:35:0,35:0:0:35:1260:-113.314,-10.5361,0	0/1:43:26,17:26:928:17:612:-42.1912,0,-70.894	1/1:92:0,92:0:0:92:3299:-271.986,-27.6948,0	0/0:14:13,1:13:460:1:36:0,-0.790818,-38.3118	0/1:57:40,17:40:1417:17:612:-38.0741,0,-110.667	0/1:45:30,15:30:1063:15:540:-35.2633,0,-82.4345	1/1:120:0,119:0:0:119:4268:-382.976,-35.8226,0	0/1:117:75,42:75:2692:42:1497:-82.8999,0,-205.943	0/1:92:58,34:58:2061:34:1220:-81.9881,0,-158.065	0/1:84:52,31:52:1837:31:1116:-75.0354,0,-140.263	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	0/1:81:53,28:53:1862:28:1008:-66.434,0,-143.472	1/1:64:0,64:0:0:64:2300:-206.869,-19.2659,0	1/1:153:0,153:0:0:153:5508:-446.42,-46.0576,0	0/1:114:65,49:65:2314:49:1764:-111.339,0,-173.643	1/1:73:1,72:1:32:72:2592:-206.964,-18.9875,0	0/1:84:63,21:63:2236:21:752:-36.7543,0,-176.21	0/1:131:80,51:80:2839:51:1832:-112.15,0,-215.826	0/1:52:28,24:28:1000:24:864:-62.16,0,-74.6618	1/1:49:0,49:0:0:49:1748:-157.155,-14.7505,0	1/1:66:0,66:0:0:66:2363:-212.239,-19.868,0	0/1:100:64,35:64:2288:35:1256:-82.8104,0,-176.02	0/1:115:66,49:66:2340:49:1764:-124.105,0,-176.239	0/1:58:51,7:51:1783:7:252:-3.56464,0,-143.032	1/1:81:1,80:1:32:80:2880:-238.358,-21.1841,0	1/1:87:0,87:0:0:87:3132:-262.905,-26.1896,0
chr01	34437868	.	ATGC	ATGT	24788.1	PASS	AB=0.420805;ABP=165.349;AC=90;AF=0.478723;AN=188;AO=1276;CIGAR=3M1X;DP=3280;DPB=3280;DPRA=0;EPP=401.663;EPPR=2260.91;GTI=7;LEN=1;MEANALT=1.04255;MQM=34.8237;MQMR=46.8823;NS=94;NUMALT=1;ODDS=0.0919322;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45481;QR=70476;RO=1997;RPL=957;RPP=695.71;RPPR=2741.62;RPR=319;RUN=1;SAF=581;SAP=25.1266;SAR=695;SRF=1542;SRP=1287.81;SRR=455;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:8,4:8:288:4:129:-7.1563,0,-22.5439	0/1:73:59,14:59:2100:14:504:-18.5607,0,-163.358	0/1:13:7,6:7:243:6:216:-13.6185,0,-17.4281	0/1:32:24,8:24:848:8:280:-13.4959,0,-63.3895	0/0:18:17,1:17:609:1:36:0,-2.11952,-51.2638	0/1:15:13,2:13:465:2:63:-1.00287,0,-37.1013	0/1:25:19,6:19:676:6:216:-10.1083,0,-50.4404	0/1:30:13,17:13:453:17:608:-38.7594,0,-30.7834	0/1:51:31,18:31:1085:18:625:-35.8335,0,-81.7015	0/1:47:33,14:33:1179:14:500:-26.095,0,-91.6995	0/1:37:22,15:22:770:15:536:-32.5374,0,-56.4202	0/1:52:13,39:13:459:39:1396:-97.2212,0,-23.4778	0/1:55:7,48:7:241:48:1728:-123.87,0,-4.43183	0/1:49:17,32:17:594:32:1144:-77.6979,0,-38.4037	0/1:36:4,32:4:136:32:1152:-81.8907,0,-1.1793	0/1:39:10,29:10:349:29:1036:-72.4332,0,-17.9649	0/1:32:9,23:9:321:23:824:-56.4839,0,-18.319	0/1:34:8,26:8:282:26:932:-66.073,0,-13.8812	0/1:32:13,19:13:436:19:684:-45.6132,0,-29.1297	0/1:87:66,21:66:2325:21:748:-34.8592,0,-180.463	0/1:28:12,16:12:424:16:576:-37.8927,0,-27.887	0/1:5:2,3:2:72:3:108:-7.63344,0,-4.82975	0/1:20:8,12:8:283:12:416:-28.4838,0,-18.6312	0/1:24:21,3:21:737:3:108:-1.70063,0,-57.593	0/1:16:14,2:14:491:2:72:-1.34584,0,-37.0521	0/1:40:17,23:17:605:23:815:-54.8849,0,-40.6846	0/1:16:6,10:6:216:10:360:-24.7535,0,-13.6592	0/1:24:7,17:7:252:17:603:-41.9569,0,-15.3349	0/1:46:27,19:27:934:19:684:-42.0136,0,-64.9832	0/1:33:23,10:23:815:10:356:-19.4592,0,-58.9644	0/1:11:8,3:8:282:3:104:-5.42739,0,-20.9962	0/1:4:2,2:2:72:2:72:-4.9582,0,-5.60367	0/1:12:8,4:8:270:4:140:-8.16179,0,-20.9392	0/1:9:8,1:8:278:1:36:-0.478354,0,-21.4728	0/1:40:27,13:27:952:13:464:-25.3913,0,-66.0487	0/1:9:6,3:6:216:3:108:-6.21608,0,-16.649	0/1:126:55,71:55:1908:71:2510:-167.365,0,-128.945	0/0:76:73,3:73:2594:3:104:0,-14.4441,-220.734	0/1:29:14,11:14:492:11:396:-24.1454,0,-36.4119	0/1:9:7,2:7:250:2:72:-3.45305,0,-19.6841	0/1:68:57,11:57:2037:11:379:-10.8923,0,-160.579	0/1:24:19,5:19:667:5:180:-7.75103,0,-51.0841	0/1:13:4,9:4:136:9:324:-22.4281,0,-8.36696	0/1:45:17,28:17:584:28:1004:-67.6074,0,-38.7935	0/1:30:7,23:7:252:23:828:-57.801,0,-13.7175	0/1:44:34,10:34:1207:10:360:-16.1298,0,-93.953	0/1:9:2,7:2:72:7:252:-17.6915,0,-3.64841	0/0:21:20,1:20:708:1:36:0,-3.13401,-56.1379	0/0:33:31,2:31:1098:2:72:0,-3.77167,-87.271	0/1:77:66,11:66:2339:11:392:-8.7177,0,-184.595	0/1:70:60,10:60:2106:10:360:-8.04182,0,-165.303	0/1:31:26,5:26:896:5:176:-5.55713,0,-70.1319	0/1:64:54,10:54:1923:10:356:-8.73253,0,-150.12	1/1:1:0,1:0:0:1:36:-3.29902,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.18762,-0.30103,0	0/1:13:3,10:3:100:10:360:-25.094,0,-5.1192	0/1:5:2,3:2:71:3:108:-7.4202,0,-4.94108	0/1:21:7,14:7:240:14:470:-32.6235,0,-15.532	0/0:32:29,3:29:1021:3:108:0,-0.603638,-82.1917	0/1:22:9,13:9:319:13:464:-31.5783,0,-21.2261	0/1:72:39,33:39:1379:33:1169:-73.478,0,-99.0249	0/1:12:8,4:8:281:4:136:-8.37251,0,-21.1216	0/1:27:22,5:22:766:5:180:-6.95291,0,-56.337	0/1:81:66,15:66:2356:15:506:-16.9924,0,-182.585	0/1:26:19,7:19:664:7:252:-12.6759,0,-51.3937	0/1:10:2,8:2:60:8:284:-20.1785,0,-2.44844	0/1:40:27,13:27:937:13:453:-25.072,0,-67.444	0/0:75:72,3:72:2570:3:108:0,-13.6519,-220.702	0/1:23:6,17:6:213:17:597:-42.0641,0,-12.0965	0/1:34:26,8:26:905:8:284:-12.7307,0,-70.4053	0/1:64:33,31:33:1166:31:1112:-71.4034,0,-80.3911	0/1:20:17,3:17:590:3:108:-2.90475,0,-47.2062	0/0:39:36,3:36:1276:3:108:0,-2.81482,-105.075	0/1:29:23,6:23:815:6:216:-8.85572,0,-64.2884	0/1:37:13,24:13:439:24:864:-58.537,0,-26.2356	0/1:60:47,13:47:1643:13:468:-19.5522,0,-128.864	0/1:50:42,8:42:1492:8:288:-8.21816,0,-118.008	0/1:23:12,11:12:432:11:392:-25.1407,0,-31.8217	1/1:4:0,4:0:0:4:144:-11.6711,-1.20412,0	0/1:41:31,10:31:1103:10:360:-16.6652,0,-85.4838	0/1:4:2,2:2:71:2:72:-4.85237,0,-5.13628	0/1:27:5,22:5:173:22:788:-55.5886,0,-6.51102	0/1:51:39,12:39:1395:12:432:-19.6584,0,-109.02	0/1:34:10,24:10:353:24:855:-59.0542,0,-21.1923	0/1:42:23,19:23:801:19:680:-42.3738,0,-59.1097	0/1:79:27,51:27:959:51:1819:-123.129,0,-62.008	0/1:28:15,13:15:537:13:468:-29.3977,0,-40.0194	0/1:25:10,15:10:353:15:536:-35.9957,0,-23.5806	0/1:38:11,27:11:384:27:968:-66.9295,0,-21.4547	0/1:19:11,8:11:393:8:284:-17.5607,0,-29.8469	0/1:35:20,15:20:707:15:540:-33.1871,0,-52.8097	0/1:29:22,7:22:777:7:252:-11.778,0,-60.7056	0/1:37:29,8:29:1039:8:280:-12.092,0,-79.0079	0/1:95:47,48:47:1669:48:1716:-109.836,0,-117.554
chr01	34437872	.	T	C	16326.6	PASS	AB=0.5467;ABP=33.4325;AC=44;AF=0.234043;AN=188;AO=966;CIGAR=1X;DP=3262;DPB=3262;DPRA=1.32193;EPP=2074.68;EPPR=64.5354;GTI=4;LEN=1;MEANALT=1.02174;MQM=49.4441;MQMR=38.8619;NS=94;NUMALT=1;ODDS=0.408868;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34450;QR=81903;RO=2295;RPL=962;RPP=2066.05;RPPR=3708.65;RPR=4;RUN=1;SAF=965;SAP=2091.98;SAR=1;SRF=1147;SRP=3.01125;SRR=1148;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:5,8:5:180:8:288:-22.2429,0,-10.7497	0/1:73:28,45:28:1004:45:1612:-122.439,0,-60.6708	0/0:14:14,0:14:500:0:0:0,-4.21442,-41.8615	0/0:34:34,0:34:1216:0:0:0,-10.235,-102.336	1/1:18:1,17:1:32:17:612:-51.7724,-2.364,0	0/1:14:4,10:4:144:10:360:-28.0315,0,-8.63204	0/0:26:26,0:26:928:0:0:0,-7.82678,-77.7956	0/0:29:29,0:29:1021:0:0:0,-8.72987,-84.0547	0/1:50:34,16:34:1211:16:568:-36.1961,0,-86.0343	0/1:47:25,22:25:900:22:780:-56.0976,0,-61.6211	0/0:37:37,0:37:1324:0:0:0,-11.1381,-112.459	0/0:50:50,0:50:1792:0:0:0,-15.0515,-145.891	0/0:54:54,0:54:1928:0:0:0,-16.2556,-158.297	0/1:51:37,14:37:1328:14:491:-28.9955,0,-92.3165	0/0:35:35,0:35:1247:0:0:0,-10.536,-100.995	0/0:37:37,0:37:1328:0:0:0,-11.1381,-108.018	0/0:32:32,0:32:1126:0:0:0,-9.63296,-92.6005	0/0:34:34,0:34:1224:0:0:0,-10.235,-100.52	0/0:31:31,0:31:1112:0:0:0,-9.33193,-93.3845	0/1:86:51,35:51:1820:35:1243:-85.623,0,-128.431	0/0:29:29,0:29:1028:0:0:0,-8.72987,-84.8855	0/0:5:5,0:5:176:0:0:0,-1.50515,-14.8373	0/0:19:19,0:19:671:0:0:0,-5.71957,-56.3422	0/1:24:7,17:7:252:17:608:-46.8846,0,-13.567	0/0:15:15,0:15:536:0:0:0,-4.51545,-45.3814	0/0:42:42,0:42:1504:0:0:0,-12.6433,-126.232	0/0:18:18,0:18:648:0:0:0,-5.41854,-52.9623	0/0:24:24,0:24:856:0:0:0,-7.22472,-71.1511	0/0:45:44,1:44:1580:1:36:0,-9.9633,-127.369	0/0:36:36,0:36:1288:0:0:0,-10.8371,-107.304	0/0:11:11,0:11:396:0:0:0,-3.31133,-33.2705	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.2682	0/1:10:6,4:6:216:4:144:-10.247,0,-15.8164	0/1:9:1,8:1:36:8:284:-22.0088,0,-0.478354	0/0:40:40,0:40:1416:0:0:0,-12.0412,-114.645	0/1:9:4,5:4:140:5:180:-13.409,0,-9.27983	0/0:126:126,0:126:4465:0:0:0,-37.9298,-374.501	0/1:76:15,61:15:536:61:2175:-171.506,0,-21.4773	0/1:29:17,12:17:612:12:416:-28.5349,0,-38.2618	0/1:8:2,6:2:72:6:212:-16.5787,0,-3.75408	0/1:67:25,42:25:888:42:1503:-114.83,0,-54.9121	0/1:24:20,4:20:699:4:144:-6.03256,0,-52.2044	0/0:12:12,0:12:420:0:0:0,-3.61236,-35.3419	0/0:47:47,0:47:1666:0:0:0,-14.1484,-139.469	0/0:30:29,1:29:1044:1:36:0,-5.44785,-82.4241	0/1:43:13,30:13:468:30:1076:-83.4592,0,-25.139	0/0:9:9,0:9:324:0:0:0,-2.70927,-26.4274	0/0:21:21,0:21:756:0:0:0,-6.32163,-63.0597	0/0:33:33,0:33:1165:0:0:0,-9.93399,-98.3049	0/1:78:25,52:25:896:52:1852:-142.7,0,-51.283	0/1:70:34,36:34:1212:36:1274:-92.3589,0,-82.5481	0/1:31:9,22:9:324:22:771:-60.1034,0,-17.3948	0/1:60:15,45:15:536:45:1604:-124.747,0,-26.0892	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.05454	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.18762	0/0:12:12,0:12:432:0:0:0,-3.61236,-35.2483	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.1294	0/1:21:15,6:15:532:6:208:-12.6704,0,-37.4346	0/1:32:11,21:11:388:21:756:-58.445,0,-24.0508	0/0:24:24,0:24:840:0:0:0,-7.22472,-70.3781	0/0:72:72,0:72:2571:0:0:0,-21.6742,-216.892	0/0:12:11,1:11:396:1:36:0,-0.0293099,-30.4452	0/0:28:28,0:28:996:0:0:0,-8.42884,-82.8377	0/1:80:32,48:32:1140:48:1712:-129.318,0,-69.9258	0/1:26:14,12:14:496:12:428:-30.8743,0,-34.0467	0/0:10:10,0:10:356:0:0:0,-3.0103,-29.2636	0/0:38:37,1:37:1324:1:36:0,-7.85609,-106.516	1/1:74:7,67:7:252:67:2400:-193.234,-0.858354,0	0/0:22:22,0:22:788:0:0:0,-6.62266,-65.6977	0/1:34:20,14:20:712:14:500:-34.7296,0,-50.2151	0/0:63:63,0:63:2256:0:0:0,-18.9649,-188.164	0/1:20:3,17:3:108:17:612:-49.1615,0,-2.90475	0/1:38:10,28:10:360:28:986:-77.2351,0,-19.4378	0/1:27:9,18:9:301:18:639:-49.4743,0,-17.7694	0/0:35:35,0:35:1240:0:0:0,-10.536,-101.053	0/1:58:15,43:15:540:43:1536:-120.155,0,-26.6081	0/1:50:15,35:15:540:35:1244:-96.7612,0,-29.8323	0/1:23:13,10:13:464:10:356:-25.3273,0,-31.2863	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.80113	0/1:41:13,28:13:464:28:1000:-76.059,0,-26.1385	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.16	0/0:28:28,0:28:1008:0:0:0,-8.42884,-81.5373	0/1:49:25,24:25:892:24:860:-62.6614,0,-60.6759	0/0:36:36,0:36:1264:0:0:0,-10.8371,-105.388	0/1:43:27,16:27:957:16:576:-38.6516,0,-66.1706	0/1:79:64,15:64:2296:15:540:-24.5896,0,-164.698	0/1:29:18,11:18:648:11:396:-27.1006,0,-44.9072	0/0:25:25,0:25:900:0:0:0,-7.52575,-75.1169	0/0:39:39,0:39:1387:0:0:0,-11.7402,-114.104	0/1:20:9,11:9:324:11:396:-29.8099,0,-20.3312	0/1:34:22,12:22:792:12:428:-28.4661,0,-55.7127	0/1:30:15,15:15:540:15:536:-38.9866,0,-36.6232	0/0:34:34,0:34:1224:0:0:0,-10.235,-104.572	0/0:93:93,0:93:3344:0:0:0,-27.9958,-280.176
chr01	34469787	.	C	T	29804.8	PASS	AB=0.526316;ABP=22.7821;AC=44;AF=0.236559;AN=186;AO=1734;CIGAR=1X;DP=8219;DPB=8219;DPRA=0.899925;EPP=3768.34;EPPR=14067.6;GTI=3;LEN=1;MEANALT=1.04348;MQM=59.9827;MQMR=59.9941;NS=93;NUMALT=1;ODDS=0.697884;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61778;QR=229336;RO=6481;RPL=1727;RPP=3707.79;RPPR=13791.1;RPR=7;RUN=1;SAF=1727;SAP=3707.79;SAR=7;SRF=6449;SRP=13799.7;SRR=32;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:13,24:13:459:24:856:-66.223,0,-30.506	0/1:126:59,67:59:2101:67:2400:-178.327,0,-151.428	0/0:91:91,0:91:3188:0:0:0,-27.3937,-287.139	0/0:188:187,1:187:6632:1:36:0,-52.9954,-593.364	0/1:97:47,50:47:1650:50:1780:-131.28,0,-119.584	0/1:40:17,23:17:608:23:824:-62.4421,0,-43.0108	0/0:82:82,0:82:2895:0:0:0,-24.6845,-260.785	0/0:132:132,0:132:4665:0:0:0,-39.736,-420.014	0/1:79:35,44:35:1240:44:1576:-118.35,0,-88.1231	0/1:103:63,40:63:2243:40:1426:-97.6296,0,-171.127	0/0:35:35,0:35:1169:0:0:0,-10.536,-105.503	0/0:67:67,0:67:2336:0:0:0,-20.169,-210.499	0/0:62:62,0:62:2181:0:0:0,-18.6639,-196.555	0/1:42:23,19:23:813:19:680:-48.8859,0,-60.8458	0/0:47:47,0:47:1654:0:0:0,-14.1484,-149.146	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:54:54,0:54:1884:0:0:0,-16.2556,-169.836	0/0:40:40,0:40:1414:0:0:0,-12.0412,-127.556	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/1:134:52,82:52:1847:82:2932:-223.777,0,-126.171	0/0:168:168,0:168:5953:0:0:0,-50.573,-535.862	0/0:153:153,0:153:5453:0:0:0,-46.0576,-490.899	0/0:112:112,0:112:3985:0:0:0,-33.7154,-358.838	0/1:111:61,50:61:2180:50:1785:-127.518,0,-163.05	0/0:78:78,0:78:2741:0:0:0,-23.4803,-246.931	0/0:361:361,0:361:12753:0:0:0,-108.672,-1147.61	0/0:230:230,0:230:8116:0:0:0,-69.2369,-730.463	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/0:231:230,0:230:8165:0:0:0,-69.2369,-734.55	0/0:61:61,0:61:2157:0:0:0,-18.3628,-194.396	0/0:125:125,0:125:4440:0:0:0,-37.6287,-399.766	0/0:15:15,0:15:523:0:0:0,-4.51545,-47.3985	0/1:12:4,8:4:144:8:279:-21.8352,0,-9.70126	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/0:170:170,0:170:5980:0:0:0,-51.1751,-538.312	0/1:198:98,100:98:3479:100:3563:-261.274,0,-253.716	0/1:44:20,24:20:704:24:860:-64.4765,0,-50.4392	.:.:.:.:.:.:.:.	0/1:159:73,85:73:2577:85:3045:-226.356,0,-184.257	0/1:27:14,13:14:500:13:468:-34.3318,0,-37.2084	0/0:142:141,0:141:5018:0:0:0,-42.4452,-451.407	0/0:50:50,0:50:1752:0:0:0,-15.0515,-157.961	0/1:64:25,39:25:879:39:1396:-106.673,0,-60.1609	0/1:93:41,52:41:1456:52:1845:-138.332,0,-103.34	0/0:110:110,0:110:3921:0:0:0,-33.1133,-353.083	0/0:166:164,1:164:5828:1:36:0,-46.4315,-521.037	0/0:109:109,0:109:3837:0:0:0,-32.8123,-345.525	0/1:141:68,73:68:2384:73:2606:-192.343,0,-172.369	0/1:140:63,77:63:2236:77:2752:-205.778,0,-159.357	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:78:39,39:39:1400:39:1404:-103.179,0,-102.819	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:105:105,0:105:3718:0:0:0,-31.6081,-334.821	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:14:5,9:5:176:9:320:-24.9279,0,-11.9706	0/0:33:33,0:33:1162:0:0:0,-9.93399,-104.885	0/0:87:87,0:87:3071:0:0:0,-26.1896,-276.619	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:265:265,0:265:9406:0:0:0,-79.7729,-846.507	0/1:168:89,79:89:3188:79:2836:-204.905,0,-236.571	0/1:72:41,31:41:1451:31:1116:-79.0599,0,-109.211	0/0:145:145,0:145:5130:0:0:0,-43.6493,-461.842	0/0:207:206,1:206:7322:1:36:0,-58.7149,-655.435	0/1:83:25,58:25:870:58:2061:-160.774,0,-53.6291	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:90:37,53:37:1311:53:1904:-144.545,0,-91.1982	0/0:61:61,0:61:2127:0:0:0,-18.3628,-191.696	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:75:39,36:39:1340:36:1279:-92.8352,0,-98.3179	0/1:46:24,22:24:849:22:777:-56.403,0,-62.8804	0/0:128:128,0:128:4564:0:0:0,-38.5318,-410.925	0/1:177:87,90:87:3111:90:3198:-234.76,0,-226.934	0/1:97:47,50:47:1679:50:1772:-130.56,0,-122.196	0/1:134:59,75:59:2107:75:2660:-199.307,0,-149.561	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:107:61,46:61:2152:46:1622:-114.056,0,-161.735	0/0:126:126,0:126:4440:0:0:0,-37.9298,-399.771	0/0:176:176,0:176:6213:0:0:0,-52.9813,-559.271	0/1:85:40,45:40:1418:45:1583:-117.172,0,-102.328	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:60:28,32:28:991:32:1135:-84.3963,0,-71.4417	0/1:157:71,86:71:2502:86:3050:-227.469,0,-178.169	0/1:32:8,24:8:271:24:843:-66.555,0,-15.0865	0/0:65:65,0:65:2310:0:0:0,-19.5669,-208.16	0/0:43:43,0:43:1506:0:0:0,-12.9443,-135.832	0/1:19:13,6:13:464:6:216:-14.0709,0,-36.3779	0/1:60:30,30:30:1067:30:1051:-76.8373,0,-78.2794	0/1:55:20,35:20:704:35:1230:-94.4458,0,-47.1279	0/0:121:121,0:121:4289:0:0:0,-36.4246,-386.19	0/0:64:64,0:64:2225:0:0:0,-19.2659,-200.512
chr01	34474058	.	G	A	32260.3	PASS	AB=0.471333;ABP=32.8901;AC=44;AF=0.234043;AN=188;AO=1977;CIGAR=1X;DP=8273;DPB=8273;DPRA=1.1892;EPP=4278.66;EPPR=7433.23;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9575;MQMR=59.9841;NS=94;NUMALT=1;ODDS=1.90903;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70263;QR=224502;RO=6292;RPL=2;RPP=4278.66;RPPR=7439.64;RPR=1975;RUN=1;SAF=1977;SAP=4296.01;SAR=0;SRF=6291;SRP=13657.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.4536	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:93:92,1:92:3272:1:36:0,-24.3975,-291.101	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:19:4,15:4:140:15:521:-41.4267,0,-7.22501	0/0:38:37,1:37:1316:1:32:0,-8.23983,-115.542	0/0:58:58,0:58:2050:0:0:0,-17.4597,-184.771	0/1:70:45,25:45:1589:25:884:-58.8063,0,-122.226	0/1:33:4,29:4:144:29:1017:-81.9058,0,-3.32214	0/0:142:142,0:142:5040:0:0:0,-42.7463,-453.618	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.295	0/0:65:65,0:65:2287:0:0:0,-19.5669,-206.09	0/1:38:22,16:22:773:16:557:-39.0164,0,-58.4503	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:73:73,0:73:2610:0:0:0,-21.9752,-235.147	0/1:78:34,44:34:1220:44:1557:-116.939,0,-86.6265	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:165:165,0:165:5904:0:0:0,-49.6699,-531.47	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:304:304,0:304:10856:0:0:0,-91.5131,-976.901	0/1:276:157,119:157:5582:119:4244:-299.057,0,-419.422	0/1:375:205,169:205:7327:169:6028:-429.677,0,-546.535	0/0:367:367,0:367:13126:0:0:0,-110.478,-1181.07	0/1:322:169,153:169:6002:153:5449:-393.605,0,-443.356	0/0:170:170,0:170:6059:0:0:0,-51.1751,-545.413	0/1:50:25,25:25:884:25:884:-64.8269,0,-64.8269	0/1:167:52,115:52:1863:115:4089:-317.924,0,-117.677	0/1:155:90,65:90:3211:65:2324:-162.761,0,-242.553	0/1:104:60,44:60:2147:44:1526:-106.321,0,-162.189	0/1:105:46,59:46:1648:59:2099:-157.571,0,-117	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:33:12,21:12:428:21:737:-56.7166,0,-28.9248	0/1:40:25,15:25:884:15:540:-36.8953,0,-67.8372	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/0:58:58,0:58:2056:0:0:0,-17.4597,-185.303	0/1:44:18,26:18:644:26:909:-68.8777,0,-45.0453	0/1:31:11,20:11:396:20:716:-55.4358,0,-26.6508	0/1:278:207,71:207:7415:71:2544:-145.524,0,-583.708	0/1:32:23,9:23:828:9:309:-18.5078,0,-65.2112	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:177:175,2:175:6275:2:72:0,-46.4456,-558.005	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.554	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:310:183,127:183:6564:127:4483:-310.317,0,-497.521	0/1:167:74,92:74:2639:92:3257:-243.014,0,-187.426	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/1:257:139,118:139:4968:118:4230:-303.514,0,-369.905	0/0:167:167,0:167:5932:0:0:0,-50.272,-533.991	0/1:70:46,24:46:1640:24:849:-55.6557,0,-126.817	0/1:27:13,14:13:459:14:500:-37.2084,0,-33.5163	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:47:47,0:47:1668:0:0:0,-14.1484,-150.407	0/1:47:19,28:19:684:28:980:-74.3624,0,-47.7419	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/1:31:22,9:22:792:9:320:-19.8104,0,-62.2737	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:105:29,76:29:1040:76:2728:-214.154,0,-62.3062	0/1:50:32,18:32:1144:18:648:-43.6004,0,-88.218	0/1:32:17,15:17:612:15:528:-37.5872,0,-45.7805	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.682	0/1:72:36,35:36:1292:35:1248:-91.0179,0,-94.9769	0/1:49:15,34:15:540:34:1212:-94.6359,0,-34.1861	0/1:24:4,20:4:144:20:701:-56.187,0,-6.0889	0/0:147:147,0:147:5230:0:0:0,-44.2514,-470.84	0/1:46:25,21:25:900:21:744:-53.4369,0,-67.4736	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:110:109,0:109:3893:0:0:0,-32.8123,-350.203	0/1:43:29,14:29:1044:14:504:-32.7538,0,-81.3305	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:30:18,12:18:631:12:428:-29.8279,0,-48.0848	0/1:84:50,34:50:1773:34:1224:-85.1805,0,-134.565	0/1:15:8,7:8:265:7:248:-18.1487,0,-19.6566	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.918	0/0:53:53,0:53:1874:0:0:0,-15.9546,-168.934	0/1:161:71,90:71:2532:90:3200:-239.758,0,-179.666	0/1:206:115,91:115:4095:91:3229:-228.82,0,-306.725	0/1:50:23,27:23:805:27:960:-71.6648,0,-57.716	0/0:54:54,0:54:1900:0:0:0,-16.2556,-171.275	0/0:85:85,0:85:2999:0:0:0,-25.5875,-270.141
chr01	34475878	.	T	C	31413.8	PASS	AB=0.476824;ABP=21.9325;AC=43;AF=0.231183;AN=186;AO=1945;CIGAR=1X;DP=10477;DPB=10477;DPRA=0.972031;EPP=4226.52;EPPR=18477.9;GTI=5;LEN=1;MEANALT=1;MQM=59.7517;MQMR=59.975;NS=93;NUMALT=1;ODDS=0.125853;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68883;QR=302817;RO=8532;RPL=0;RPP=4226.52;RPPR=18530;RPR=1945;RUN=1;SAF=0;SAP=4226.52;SAR=1945;SRF=6;SRP=18477.9;SRR=8526;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:38,23:38:1351:23:824:-56.1187,0,-103.527	0/1:143:68,75:68:2401:75:2651:-195.584,0,-173.299	0/0:137:137,0:137:4843:0:0:0,-41.2411,-436.028	0/0:287:284,3:284:10095:3:99:0,-77.159,-899.244	0/1:95:49,46:49:1729:46:1627:-118.119,0,-127.295	0/1:50:19,31:19:672:31:1107:-84.8887,0,-45.7553	0/0:206:206,0:206:7354:0:0:0,-62.0122,-661.91	0/0:239:238,1:238:8468:1:36:0,-68.3479,-758.525	0/1:123:78,45:78:2747:45:1595:-106.81,0,-210.445	0/1:106:52,54:52:1860:54:1923:-141.425,0,-135.77	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.988	0/0:91:91,0:91:3213:0:0:0,-27.3937,-289.386	0/0:67:67,0:67:2375:0:0:0,-20.169,-214.008	0/1:32:11,21:11:384:21:739:-57.1994,0,-25.2617	0/0:60:60,0:60:2090:0:0:0,-18.0618,-188.37	0/0:62:62,0:62:2199:0:0:0,-18.6639,-198.175	0/0:61:61,0:61:2154:0:0:0,-18.3628,-194.127	0/0:77:76,1:76:2674:1:36:0,-19.581,-237.308	0/0:39:39,0:39:1374:0:0:0,-11.7402,-123.957	0/1:306:162,144:162:5767:144:5118:-368.624,0,-427.034	0/0:149:149,0:149:5292:0:0:0,-44.8535,-476.411	0/0:150:149,1:149:5290:1:36:0,-41.5562,-472.582	0/0:104:104,0:104:3716:0:0:0,-31.3071,-334.642	0/1:159:100,59:100:3530:59:2066:-138.344,0,-270.049	0/0:123:123,0:123:4380:0:0:0,-37.0267,-394.369	0/0:382:382,0:382:13582:0:0:0,-114.993,-1222.18	0/0:236:236,0:236:8411:0:0:0,-71.0431,-756.296	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/0:316:316,0:316:11218:0:0:0,-95.1255,-1009.51	0/0:152:151,1:151:5329:1:25:0,-43.2567,-477.241	0/0:140:140,0:140:4986:0:0:0,-42.1442,-448.88	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:14:10,4:10:348:4:144:-9.0992,0,-27.4407	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:248:248,0:248:8716:0:0:0,-74.6554,-784.444	0/1:227:102,125:102:3647:125:4419:-329.504,0,-260.1	0/1:54:39,15:39:1384:15:536:-32.3149,0,-108.603	.:.:.:.:.:.:.:.	0/1:186:89,97:89:3176:97:3446:-254.351,0,-230.073	0/1:46:27,19:27:964:19:672:-46.9595,0,-73.2294	0/0:152:152,0:152:5406:0:0:0,-45.7566,-486.673	0/0:109:109,0:109:3827:0:0:0,-32.8123,-344.631	0/1:65:32,33:32:1140:33:1184:-87.3014,0,-83.3423	0/1:150:82,68:82:2898:68:2415:-172.434,0,-215.903	0/0:146:146,0:146:5201:0:0:0,-43.9504,-468.23	0/0:230:229,1:229:8121:1:36:0,-65.6386,-727.311	0/0:161:161,0:161:5754:0:0:0,-48.4658,-517.976	0/1:110:58,52:58:2076:52:1849:-133.575,0,-153.997	0/1:226:128,98:128:4554:98:3494:-246.638,0,-341.995	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:136:54,82:54:1931:82:2922:-222.243,0,-133.126	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:114:114,0:114:4078:0:0:0,-34.3174,-367.205	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:14:4,10:4:144:10:360:-28.529,0,-9.0992	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	0/0:153:153,0:153:5395:0:0:0,-46.0576,-485.688	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/0:253:252,1:252:8946:1:36:0,-72.5623,-801.53	0/1:191:99,92:99:3544:92:3273:-237.282,0,-261.672	0/1:41:20,21:20:716:21:740:-54.5799,0,-52.4255	0/0:88:88,0:88:3147:0:0:0,-26.4906,-283.455	0/0:203:203,0:203:7176:0:0:0,-61.1091,-644.962	0/1:113:39,74:39:1367:74:2635:-203.38,0,-89.3113	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/1:90:40,50:40:1428:50:1776:-133.029,0,-101.725	0/0:79:79,0:79:2773:0:0:0,-23.7814,-249.813	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:147:78,69:78:2791:69:2411:-172.975,0,-207.178	0/1:84:50,34:50:1774:34:1187:-81.8311,0,-134.655	0/0:236:236,0:236:8405:0:0:0,-71.0431,-756.325	0/1:137:78,59:78:2762:59:2080:-146.225,0,-207.581	0/1:112:68,44:68:2432:44:1564:-107.237,0,-185.404	0/1:99:57,42:57:2026:42:1477:-103.402,0,-152.809	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:84:35,49:35:1260:49:1734:-131.052,0,-88.419	0/0:98:98,0:98:3468:0:0:0,-29.5009,-312.333	0/0:316:316,0:316:11245:0:0:0,-95.1255,-1011.94	0/1:133:62,71:62:2189:71:2516:-186.653,0,-157.237	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:80:40,40:40:1420:40:1408:-102.932,0,-104.015	0/1:160:99,61:99:3462:61:2153:-145.869,0,-263.63	0/1:60:37,23:37:1308:23:816:-55.6977,0,-99.9526	0/0:100:100,0:100:3517:0:0:0,-30.103,-316.743	0/0:71:71,0:71:2498:0:0:0,-21.3731,-225.073	0/1:21:16,5:16:568:5:180:-10.2304,0,-45.1302	0/1:69:42,27:42:1491:27:919:-62.2285,0,-113.713	0/1:105:40,65:40:1419:65:2295:-175.14,0,-96.3985	0/0:103:103,0:103:3667:0:0:0,-31.0061,-330.235	0/0:102:102,0:102:3585:0:0:0,-30.7051,-322.858
chr01	34475927	.	T	C	31895.4	PASS	AB=0.473684;ABP=27.5822;AC=43;AF=0.231183;AN=186;AO=1943;CIGAR=1X;DP=10588;DPB=10588;DPRA=0.921648;EPP=4222.18;EPPR=18771;GTI=4;LEN=1;MEANALT=1;MQM=59.7391;MQMR=59.9737;NS=93;NUMALT=1;ODDS=0.580459;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69452;QR=309152;RO=8643;RPL=1943;RPP=4222.18;RPPR=18771;RPR=0;RUN=1;SAF=0;SAP=4222.18;SAR=1943;SRF=0;SRP=18771;SRR=8643;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:41,22:41:1472:22:788:-52.2781,0,-113.811	0/1:145:69,76:69:2476:76:2716:-200.831,0,-179.444	0/0:140:140,0:140:4987:0:0:0,-42.1442,-448.975	0/0:288:288,0:288:10296:0:0:0,-86.6966,-926.548	0/1:95:49,46:49:1760:46:1637:-119.019,0,-130.086	0/1:50:19,31:19:684:31:1112:-85.3398,0,-46.8388	0/0:207:207,0:207:7417:0:0:0,-62.3132,-667.573	0/0:246:244,2:244:8731:2:72:0,-67.2167,-778.938	0/1:127:79,48:79:2825:48:1724:-117.204,0,-215.699	0/1:107:53,54:53:1900:54:1936:-142.284,0,-139.068	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:92:91,0:91:3276:0:0:0,-27.3937,-294.691	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:35:13,22:13:464:22:792:-61.0696,0,-31.5615	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.952	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:77:76,1:76:2736:1:36:0,-19.581,-242.884	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:309:164,145:164:5865:145:5163:-371.765,0,-434.942	0/0:153:153,0:153:5469:0:0:0,-46.0576,-492.326	0/0:153:153,0:153:5473:0:0:0,-46.0576,-492.64	0/0:106:106,0:106:3782:0:0:0,-31.9092,-340.576	0/1:161:100,61:100:3592:61:2169:-147.005,0,-275.02	0/0:126:126,0:126:4501:0:0:0,-37.9298,-405.256	0/0:383:383,0:383:13715:0:0:0,-115.294,-1234.12	0/0:237:237,0:237:8478:0:0:0,-71.3441,-763.018	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:318:318,0:318:11391:0:0:0,-95.7275,-1025.06	0/0:152:152,0:152:5418:0:0:0,-45.7566,-487.744	0/0:144:144,0:144:5168:0:0:0,-43.3483,-465.25	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:250:249,0:249:8929:0:0:0,-74.9565,-803.227	0/1:224:99,125:99:3541:125:4462:-334.179,0,-251.466	0/1:53:38,15:38:1360:15:540:-32.9777,0,-106.746	.:.:.:.:.:.:.:.	0/1:189:91,98:91:3238:98:3509:-259.11,0,-234.745	0/1:49:30,19:30:1080:19:684:-47.1399,0,-82.7628	0/0:155:155,0:155:5500:0:0:0,-46.6596,-495.125	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/1:63:30,33:30:1076:33:1173:-86.9107,0,-78.188	0/1:151:83,68:83:2984:68:2410:-171.68,0,-223.336	0/0:144:144,0:144:5168:0:0:0,-43.3483,-465.259	0/0:234:233,1:233:8319:1:36:0,-66.8427,-745.031	0/0:164:164,0:164:5835:0:0:0,-49.3689,-525.261	0/1:109:58,51:58:2084:51:1817:-130.997,0,-155.018	0/1:227:129,98:129:4606:98:3500:-246.878,0,-346.368	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:137:55,82:55:1961:82:2925:-222.211,0,-135.522	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:114:114,0:114:4054:0:0:0,-34.3174,-365.046	0/0:78:78,0:78:2759:0:0:0,-23.4803,-248.546	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:15:5,10:5:180:10:360:-28.2279,0,-12.0366	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:154:154,0:154:5532:0:0:0,-46.3586,-498.003	0/1:8:4,4:4:129:4:144:-10.9054,0,-9.51942	0/0:255:254,1:254:9034:1:36:0,-73.1644,-809.437	0/1:192:99,93:99:3530:93:3336:-242.648,0,-260.109	0/1:41:20,21:20:701:21:726:-53.3128,0,-51.0695	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:202:202,0:202:7237:0:0:0,-60.8081,-651.376	0/1:118:42,76:42:1497:76:2705:-208.171,0,-99.501	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:92:41,51:41:1476:51:1836:-137.814,0,-105.441	0/0:83:83,0:83:2957:0:0:0,-24.9855,-266.362	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:147:79,68:79:2836:68:2431:-174.785,0,-211.227	0/1:83:50,33:50:1762:33:1184:-81.8691,0,-133.874	0/0:236:235,1:235:8420:1:36:0,-67.4448,-754.07	0/1:142:83,59:83:2980:59:2120:-148.322,0,-225.686	0/1:111:66,45:66:2353:45:1612:-111.867,0,-178.605	0/1:98:57,41:57:2033:41:1472:-103.148,0,-153.74	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:84:37,47:37:1328:47:1684:-126.559,0,-94.5357	0/0:100:100,0:100:3562:0:0:0,-30.103,-320.785	0/0:318:318,0:318:11333:0:0:0,-95.7275,-1019.79	0/1:130:63,67:63:2264:67:2404:-177.476,0,-164.888	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:80:41,39:41:1438:39:1396:-101.851,0,-105.629	0/1:160:99,61:99:3541:61:2173:-147.667,0,-270.732	0/1:61:38,23:38:1368:23:824:-56.1067,0,-105.04	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.845	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/1:20:15,5:15:521:5:180:-10.5315,0,-41.1957	0/1:67:41,26:41:1476:26:936:-64.3728,0,-112.967	0/1:107:42,65:42:1508:65:2332:-177.802,0,-103.804	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.894	0/0:105:105,0:105:3780:0:0:0,-31.6081,-340.389
chr01	34482198	.	TACG	CACC,TACC	77714.7	PASS	AB=0.428804,0.569022;ABP=84.0204,79.1487;AC=142,44;AF=0.763441,0.236559;AN=186;AO=3286,1051;CIGAR=1X2M1X,3M1X;DP=4351;DPB=4351.75;DPRA=23.6359,0.844811;EPP=7138.47,2285.23;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.63043,2.06667;MQM=32.4008,57.6461;MQMR=0;NS=93;NUMALT=2;ODDS=1.01782;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=36,36;PQR=0;PRO=0;QA=114504,37446;QR=0;RO=0;RPL=0,0;RPP=7138.47,2285.23;RPPR=0;RPR=3286,1051;RUN=1,1;SAF=3286,1051;SAP=7138.47,2285.23;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:16:0,10,6:0:0:10,6:358,216:-42.2358,-17.9827,-14.9724,-24.5917,0,-22.7855	1/2:44:0,10,34:0:0:10,34:342,1200:-120.128,-96.6938,-93.6835,-23.7404,0,-13.5053	1/1:80:0,80,0:0:0:80,0:2804,0:-212.412,-24.0824,0,-212.412,-24.0824,-212.412	1/1:83:0,82,0:0:0:82,0:2869,0:-221.388,-24.6845,0,-221.388,-24.6845,-221.388	1/2:21:0,8,13:0:0:8,13:265,468:-56.8753,-38.5344,-36.1261,-18.6566,0,-14.7432	1/2:31:0,14,17:0:0:14,17:502,608:-82.309,-49.8389,-45.6245,-32.791,0,-27.6735	1/1:94:0,94,0:0:0:94,0:3284,0:-257.816,-28.2968,0,-257.816,-28.2968,-257.816	1/1:57:0,57,0:0:0:57,0:1981,0:-152.502,-17.1587,0,-152.502,-17.1587,-152.502	1/2:45:0,19,26:0:0:19,26:662,932:-119.82,-76.0734,-70.3538,-44.0648,0,-36.238	1/2:55:0,30,25:0:0:30,25:1046,888:-145.324,-72.6377,-63.6068,-73.017,0,-65.4913	1/1:53:0,52,0:0:0:52,0:1802,0:-140.771,-15.6536,0,-140.771,-15.6536,-140.771	1/1:59:0,58,0:0:0:58,0:2019,0:-154.985,-17.4597,0,-154.985,-17.4597,-154.985	1/1:65:0,64,0:0:0:64,0:2216,0:-171.171,-19.2659,0,-171.171,-19.2659,-171.171	1/2:44:0,17,27:0:0:17,27:579,959:-117.689,-78.4191,-73.3016,-39.585,0,-31.4572	1/1:44:0,44,0:0:0:44,0:1539,0:-120.75,-13.2453,0,-120.75,-13.2453,-120.75	1/1:36:0,36,0:0:0:36,0:1280,0:-97.7572,-10.8371,0,-97.7572,-10.8371,-97.7572	1/1:55:0,55,0:0:0:55,0:1910,0:-146.332,-16.5567,0,-146.332,-16.5567,-146.332	1/1:50:0,49,0:0:0:49,0:1727,0:-131.423,-14.7505,0,-131.423,-14.7505,-131.423	1/1:38:0,38,0:0:0:38,0:1304,0:-99.7343,-11.4391,0,-99.7343,-11.4391,-99.7343	1/2:88:0,34,54:0:0:34,54:1164,1932:-239.324,-157.764,-147.529,-81.8815,0,-65.6258	1/1:72:0,72,0:0:0:72,0:2524,0:-195.13,-21.6742,0,-195.13,-21.6742,-195.13	1/1:31:0,31,0:0:0:31,0:1090,0:-88.9785,-9.33193,0,-88.9785,-9.33193,-88.9785	1/1:27:0,27,0:0:0:27,0:943,0:-73.8364,-8.12781,0,-73.8364,-8.12781,-73.8364	1/2:34:0,18,15:0:0:18,15:627,532:-85.5174,-43.3211,-37.9026,-42.2156,0,-37.7002	1/1:30:0,30,0:0:0:30,0:1033,0:-78.4744,-9.0309,0,-78.4744,-9.0309,-78.4744	1/1:102:0,102,0:0:0:102,0:3534,0:-284.488,-30.7051,0,-284.488,-30.7051,-284.488	1/1:96:0,96,0:0:0:96,0:3333,0:-257.68,-28.8989,0,-257.68,-28.8989,-257.68	1/1:39:0,39,0:0:0:39,0:1344,0:-104.571,-11.7402,0,-104.571,-11.7402,-104.571	1/1:75:0,75,0:0:0:75,0:2609,0:-212.24,-22.5773,0,-212.24,-22.5773,-212.24	1/1:38:0,38,0:0:0:38,0:1318,0:-101.434,-11.4391,0,-101.434,-11.4391,-101.434	1/1:33:0,33,0:0:0:33,0:1175,0:-92.3842,-9.93399,0,-92.3842,-9.93399,-92.3842	1/1:4:0,4,0:0:0:4,0:129,0:-10.6871,-1.20412,0,-10.6871,-1.20412,-10.6871	1/2:7:0,4,3:0:0:4,3:144,97:-17.9223,-8.14009,-6.93597,-10.0977,0,-9.19458	1/2:4:0,2,1:0:0:2,1:72,32:-7.50502,-2.60349,-2.00143,-4.9202,0,-4.61917	1/1:1:0,1,0:0:0:1,0:35,0:-3.02366,-0.30103,0,-3.02366,-0.30103,-3.02366	1/2:8:0,3,5:0:0:3,5:108,180:-22.3687,-15.0449,-14.1418,-7.64962,0,-6.14447	1/1:162:0,162,0:0:0:162,0:5693,0:-461.047,-48.7669,0,-461.047,-48.7669,-461.047	1/2:41:0,24,17:0:0:24,17:842,608:-106.793,-49.8642,-42.6395,-57.261,0,-52.1435	1/2:65:0,21,44:0:0:21,44:741,1572:-179.042,-128.152,-121.83,-51.2105,0,-37.9652	.:.:.:.:.:.:.:.	1/2:58:0,29,29:0:0:29,29:1021,1035:-154.698,-84.5173,-75.7874,-70.5102,0,-61.7803	1/2:42:0,15,27:0:0:15,27:513,951:-111.487,-77.5349,-73.0195,-34.2606,0,-26.1328	1/1:56:0,56,0:0:0:56,0:1909,0:-146.156,-16.8577,0,-146.156,-16.8577,-146.156	1/1:53:0,52,0:0:0:52,0:1833,0:-142.007,-15.6536,0,-142.007,-15.6536,-142.007	1/2:57:0,26,31:0:0:26,31:899,1094:-151.699,-89.1155,-81.2888,-62.9078,0,-53.5759	1/2:50:0,21,28:0:0:21,28:737,1008:-135.928,-82.2787,-75.9571,-53.7028,0,-45.274	1/1:40:0,40,0:0:0:40,0:1401,0:-108.857,-12.0412,0,-108.857,-12.0412,-108.857	1/1:69:0,69,0:0:0:69,0:2353,0:-186.291,-20.7711,0,-186.291,-20.7711,-186.291	1/1:41:0,41,0:0:0:41,0:1416,0:-110.927,-12.3422,0,-110.927,-12.3422,-110.927	1/2:50:0,22,28:0:0:22,28:747,992:-133.253,-80.6725,-74.0499,-52.9027,0,-44.4738	1/2:64:0,36,28:0:0:36,28:1258,1004:-173.435,-82.2246,-71.3875,-91.5498,0,-83.121	1/2:5:0,4,1:0:0:4,1:129,36:-12.6136,-3.29724,-2.09312,-9.66293,0,-9.3619	1/2:71:0,29,41:0:0:29,41:1013,1456:-188.63,-118.657,-109.927,-70.0507,0,-57.7085	1/1:11:0,11,0:0:0:11,0:387,0:-31.9182,-3.31133,0,-31.9182,-3.31133,-31.9182	1/1:5:0,5,0:0:0:5,0:163,0:-13.3581,-1.50515,0,-13.3581,-1.50515,-13.3581	1/1:37:0,36,1:0:0:36,1:1252,36:-95.4373,-10.8371,0,-92.5543,-7.60199,-92.2532	1/1:12:0,12,0:0:0:12,0:417,0:-33.2295,-3.61236,0,-33.2295,-3.61236,-33.2295	1/2:6:0,3,3:0:0:3,3:107,103:-16.017,-8.42709,-7.524,-7.91399,0,-7.0109	1/2:2:0,1,1:0:0:1,1:35,36:-5.85539,-3.29724,-2.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chr01	34482247	.	A	G	48095.8	PASS	AB=0.254026;ABP=1602.19;AC=142;AF=0.755319;AN=188;AO=3206;CIGAR=1X;DP=5495;DPB=5495;DPRA=17.0435;EPP=6956.07;EPPR=256.797;GTI=19;LEN=1;MEANALT=1.02174;MQM=32.4333;MQMR=57.5195;NS=94;NUMALT=1;ODDS=0.0572334;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111732;QR=81363;RO=2287;RPL=3204;RPP=6947.39;RPPR=2322.57;RPR=2;RUN=1;SAF=3203;SAP=6938.72;SAR=3;SRF=1040;SRP=43.6948;SRR=1247;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:12,10:12:423:10:343:-20.3216,0,-31.7526	0/1:88:78,10:78:2774:10:345:-0.305477,0,-221.992	1/1:77:0,77:0:0:77:2740:-207.317,-23.1793,0	1/1:81:0,81:0:0:81:2866:-220.222,-24.3834,0	0/1:31:23,8:23:820:8:262:-11.8181,0,-64.7708	0/1:41:26,15:26:928:15:504:-25.6967,0,-71.372	1/1:92:0,92:0:0:92:3231:-252.311,-27.6948,0	1/1:57:0,57:0:0:57:2027:-153.417,-17.1587,0	0/1:62:43,19:43:1528:19:658:-30.9687,0,-118.814	0/1:80:50,30:50:1766:30:1042:-58.1799,0,-135.028	1/1:54:1,53:1:36:53:1830:-139.872,-12.6591,0	1/1:58:0,58:0:0:58:1957:-152.143,-17.4597,0	1/1:63:0,63:0:0:63:2145:-167.198,-18.9649,0	0/1:102:89,13:89:3138:13:432:-2.62209,0,-251.604	1/1:46:3,43:3:93:43:1490:-108.483,-5.17421,0	1/1:35:0,35:0:0:35:1217:-94.3801,-10.5361,0	1/1:55:0,55:0:0:55:1931:-147.953,-16.5567,0	1/1:49:0,49:0:0:49:1672:-128.927,-14.7505,0	1/1:37:0,37:0:0:37:1272:-97.9798,-11.1381,0	0/1:151:118,33:118:4224:33:1172:-45.1604,0,-334.59	1/1:70:0,70:0:0:70:2480:-190.893,-21.0721,0	1/1:31:0,31:0:0:31:1099:-89.0973,-9.33193,0	1/1:27:0,27:0:0:27:960:-74.7609,-8.12781,0	0/1:53:35,18:35:1248:18:618:-31.7102,0,-96.6429	1/1:29:0,29:0:0:29:968:-73.8009,-8.72987,0	1/1:98:0,98:0:0:98:3418:-275.049,-29.5009,0	1/1:92:0,92:0:0:92:3246:-248.675,-27.6948,0	1/1:38:0,38:0:0:38:1318:-102.167,-11.4391,0	1/1:73:0,72:0:0:72:2529:-204.984,-21.6742,0	1/1:35:0,35:0:0:35:1214:-93.6458,-10.5361,0	1/1:33:0,33:0:0:33:1141:-90.7198,-9.93399,0	1/1:4:0,4:0:0:4:144:-11.3018,-1.20412,0	0/1:16:12,4:12:428:4:144:-6.48531,0,-33.9764	0/1:4:3,1:3:104:1:36:-1.85042,0,-8.49827	1/1:1:0,1:0:0:1:36:-3.05454,-0.30103,0	0/1:13:10,3:10:360:3:104:-4.49425,0,-28.8293	1/1:157:0,157:0:0:157:5418:-441.746,-47.2617,0	0/1:60:37,23:37:1310:23:809:-43.4757,0,-100.053	0/1:131:110,20:110:3927:20:693:-14.5384,0,-313.777	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0669	0/1:86:57,29:57:2035:29:1036:-53.9219,0,-157.298	0/1:79:64,15:64:2279:15:536:-15.5968,0,-181.109	1/1:56:0,56:0:0:56:1963:-148.203,-16.8577,0	1/1:52:0,52:0:0:52:1775:-139.585,-15.6536,0	0/1:87:62,25:62:2204:25:859:-41.3003,0,-171.995	0/1:59:38,21:38:1352:21:735:-42.376,0,-104.146	1/1:39:0,39:0:0:39:1383:-106.734,-11.7402,0	1/1:63:0,63:0:0:63:2222:-174.267,-18.9649,0	1/1:39:0,39:0:0:39:1362:-106.365,-11.7402,0	0/1:86:64,22:64:2284:22:762:-34.3086,0,-179.392	0/1:83:48,35:48:1720:35:1225:-74.6139,0,-130.027	0/1:5:1,4:1:32:4:144:-10.0523,0,-1.69416	0/1:108:80,28:80:2860:28:987:-44.3967,0,-225.008	1/1:10:0,10:0:0:10:360:-29.4286,-3.0103,0	1/1:5:0,5:0:0:5:180:-14.0509,-1.50515,0	1/1:37:1,36:1:36:36:1255:-92.8622,-7.60199,0	1/1:11:0,11:0:0:11:392:-31.0751,-3.31133,0	0/1:6:3,3:3:108:3:104:-6.82768,0,-7.94035	0/1:6:5,1:5:176:1:36:-1.43998,0,-14.3731	1/1:34:0,34:0:0:34:1183:-92.2239,-10.235,0	1/1:76:0,76:0:0:76:2616:-204.301,-22.8783,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3105	1/1:44:0,44:0:0:44:1559:-126.958,-13.2453,0	0/1:119:97,22:97:3467:22:739:-23.6236,0,-275.918	0/1:78:57,21:57:2020:21:752:-33.9107,0,-158.494	1/1:23:0,23:0:0:23:816:-64.4278,-6.92369,0	1/1:46:3,43:3:108:43:1519:-108.999,-3.83022,0	0/1:67:55,12:55:1952:12:428:-14.1126,0,-155.646	1/1:21:0,21:0:0:21:732:-56.0175,-6.32163,0	0/1:71:42,29:42:1488:29:1028:-58.1565,0,-112.741	1/1:61:0,61:0:0:61:2115:-171.589,-18.3628,0	0/1:19:17,2:17:608:2:72:-0.215342,0,-49.2725	0/1:81:52,29:52:1860:29:1006:-53.3975,0,-143.149	0/1:66:41,25:41:1459:25:883:-48.2666,0,-111.683	1/1:50:0,50:0:0:50:1738:-133.789,-15.0515,0	0/1:87:67,20:67:2374:20:703:-29.5132,0,-187.569	0/1:67:48,19:48:1724:19:676:-31.3319,0,-135.181	0/1:77:62,15:62:2212:15:536:-18.3018,0,-175.796	1/1:3:0,3:0:0:3:104:-8.40764,-0.90309,0	0/1:69:58,11:58:2055:11:396:-9.77431,0,-163.95	1/1:28:1,27:1:36:27:960:-69.7286,-4.88032,0	1/1:84:0,84:0:0:84:2978:-233.192,-25.2865,0	0/1:123:91,32:91:3223:32:1106:-49.6237,0,-253.11	1/1:52:0,52:0:0:52:1801:-143.057,-15.6536,0	0/1:92:57,35:57:2044:35:1180:-66.368,0,-156.237	0/1:170:133,37:133:4708:37:1242:-45.4655,0,-372.12	0/1:72:54,18:54:1910:18:623:-27.0281,0,-149.031	1/1:60:0,60:0:0:60:2089:-160.409,-18.0618,0	1/1:38:0,38:0:0:38:1291:-100.116,-11.4391,0	0/1:82:66,16:66:2355:16:555:-17.9724,0,-187.363	0/1:149:130,19:130:4612:19:643:-5.19157,0,-369.907	0/1:95:74,21:74:2631:21:744:-30.0111,0,-204.862	1/1:21:1,20:1:36:20:684:-50.1365,-2.72336,0	1/1:100:1,99:1:36:99:3408:-261.987,-26.5064,0
chr01	34493951	.	C	T	29398	PASS	AB=0.495016;ABP=3.76793;AC=44;AF=0.234043;AN=188;AO=1741;CIGAR=1X;DP=8321;DPB=8321;DPRA=0.90064;EPP=3748.88;EPPR=14239.2;GTI=2;LEN=1;MEANALT=1;MQM=59.9259;MQMR=59.912;NS=94;NUMALT=1;ODDS=0.77922;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62347;QR=235052;RO=6580;RPL=1737;RPP=3748.88;RPPR=14239.2;RPR=4;RUN=1;SAF=0;SAP=3783.54;SAR=1741;SRF=0;SRP=14291.3;SRR=6580;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:20,14:20:716:14:504:-35.4631,0,-54.5327	0/1:115:59,56:59:2124:56:2016:-147.094,0,-156.809	0/0:129:129,0:129:4636:0:0:0,-38.8329,-417.401	0/0:215:215,0:215:7682:0:0:0,-64.7214,-691.413	0/1:77:33,44:33:1184:44:1584:-119.672,0,-83.689	0/1:57:28,29:28:1000:29:1044:-77.1161,0,-73.1567	0/0:105:105,0:105:3742:0:0:0,-31.6081,-336.976	0/0:161:161,0:161:5746:0:0:0,-48.4658,-517.193	0/1:119:72,47:72:2573:47:1688:-116.384,0,-195.995	0/1:95:44,51:44:1565:51:1836:-136.917,0,-112.542	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.011	0/1:61:35,26:35:1245:26:936:-66.1405,0,-93.9899	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.846	0/0:69:69,0:69:2454:0:0:0,-20.7711,-221.111	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.466	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:129:56,73:56:2008:73:2609:-196.223,0,-142.16	0/0:133:133,0:133:4715:0:0:0,-40.037,-424.509	0/0:84:84,0:84:2986:0:0:0,-25.2865,-268.969	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:99:64,35:64:2292:35:1260:-83.9031,0,-176.739	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/0:354:354,0:354:12661:0:0:0,-106.565,-1139.1	0/0:209:209,0:209:7474:0:0:0,-62.9153,-672.7	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.7577	0/0:163:163,0:163:5822:0:0:0,-49.0679,-524.09	0/0:141:141,0:141:5055:0:0:0,-42.4452,-455.083	0/0:170:170,0:170:5999:0:0:0,-51.1751,-539.698	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:40:24,16:24:864:16:561:-38.7759,0,-66.0414	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.721	0/1:29:13,16:13:464:16:576:-43.4451,0,-33.3676	0/0:164:164,0:164:5862:0:0:0,-49.3689,-527.682	0/1:246:107,139:107:3833:139:4988:-375.011,0,-271.11	0/1:70:40,30:40:1440:30:1076:-76.0808,0,-108.826	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:129:62,67:62:2205:67:2382:-175.8,0,-159.88	0/1:38:17,21:17:612:21:737:-55.2116,0,-43.9743	0/0:110:110,0:110:3907:0:0:0,-33.1133,-351.802	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:54:28,26:28:1004:26:932:-67.9428,0,-74.4198	0/1:84:50,34:50:1800:34:1220:-84.8203,0,-136.951	0/0:192:192,0:192:6836:0:0:0,-57.7978,-615.263	0/0:174:173,1:173:6171:1:36:0,-48.7809,-551.739	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.356	0/1:142:64,78:64:2270:78:2788:-208.412,0,-161.813	0/1:93:40,53:40:1402:53:1870:-140.579,0,-98.4773	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:141:70,71:70:2504:71:2521:-184.695,0,-183.167	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:121:120,1:120:4275:1:36:0,-32.8264,-381.32	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/0:114:114,0:114:4066:0:0:0,-34.3174,-366.124	0/0:101:101,0:101:3617:0:0:0,-30.404,-325.689	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/0:114:114,0:114:4104:0:0:0,-34.3174,-369.543	0/1:203:104,99:104:3709:99:3545:-258.135,0,-272.201	0/1:81:46,35:46:1637:35:1250:-88.2278,0,-123.233	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.136	0/0:137:136,1:136:4828:1:36:0,-37.6428,-431.027	0/1:82:34,48:34:1209:48:1698:-128.418,0,-84.4293	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:70:33,37:33:1173:37:1332:-99.1099,0,-84.8027	0/0:75:75,0:75:2681:0:0:0,-22.5772,-241.533	0/1:26:17,9:17:608:9:320:-21.3156,0,-47.2252	0/1:147:71,76:71:2540:76:2721:-200.88,0,-184.599	0/1:63:35,28:35:1256:28:1008:-72.0715,0,-93.7524	0/0:185:185,0:185:6588:0:0:0,-55.6905,-592.911	0/1:137:67,70:67:2393:70:2516:-185.45,0,-174.384	0/1:139:67,72:67:2397:72:2592:-191.684,0,-174.12	0/1:87:38,49:38:1364:49:1756:-132.134,0,-96.8711	0/0:21:21,0:21:741:0:0:0,-6.32163,-66.8536	0/1:99:51,48:51:1821:48:1728:-126.003,0,-134.367	0/0:75:75,0:75:2681:0:0:0,-22.5772,-241.533	0/0:200:200,0:200:7128:0:0:0,-60.206,-641.575	0/1:71:36,35:36:1281:35:1245:-90.9796,0,-94.2181	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.738	0/1:59:32,27:32:1137:27:972:-70.0371,0,-84.8758	0/1:92:53,39:53:1904:39:1396:-98.2443,0,-143.625	0/1:38:25,13:25:900:13:468:-31.0205,0,-69.8819	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:46:22,24:22:788:24:860:-63.8745,0,-57.3974	0/1:107:65,42:65:2305:42:1512:-104.119,0,-175.499	0/1:43:17,26:17:608:26:936:-71.6128,0,-42.1077	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197
chr01	34493966	.	CTGCT	TTGCT	139208	PASS	AB=0.499286;ABP=3.02581;AC=144;AF=0.765957;AN=188;AO=6486;CIGAR=1X4M;DP=8283;DPB=8293;DPRA=0;EPP=14087.2;EPPR=3796.57;GTI=3;LEN=1;MEANALT=1.28723;MQM=59.9184;MQMR=59.9222;NS=94;NUMALT=1;ODDS=0.53336;PAIRED=0;PAIREDR=0;PAO=25;PQA=702;PQR=0;PRO=0;QA=232255;QR=62247;RO=1747;RPL=6486;RPP=14087.2;RPPR=3796.57;RPR=0;RUN=1;SAF=0;SAP=14087.2;SAR=6486;SRF=0;SRP=3796.57;SRR=1747;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:15,18:15:533:18:648:-48.6611,0,-38.3132	0/1:116:56,60:56:1997:60:2148:-158.668,0,-145.085	1/1:128:1,126:1:36:126:4490:-400.668,-34.9924,0	1/1:212:1,208:1:36:208:7461:-667.904,-59.6861,0	0/1:76:44,32:44:1579:32:1144:-80.3912,0,-119.524	0/1:56:29,26:29:1041:26:928:-66.8639,0,-77.0301	1/1:104:0,104:0:0:104:3732:-336.078,-31.3071,0	1/1:163:0,161:0:0:161:5758:-517.939,-48.4658,0	0/1:119:47,72:47:1686:72:2569:-195.576,0,-116.146	0/1:94:51,43:51:1819:43:1544:-110.897,0,-135.63	1/1:58:0,58:0:0:58:2088:-188.131,-17.4597,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	1/1:55:0,52:0:0:52:1868:-167.951,-15.6536,0	0/1:61:26,35:26:932:35:1260:-95.3427,0,-65.7802	1/1:47:0,44:0:0:44:1580:-142.15,-13.2453,0	1/1:47:0,46:0:0:46:1652:-148.608,-13.8474,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:33:0,33:0:0:33:1180:-106.507,-9.93399,0	1/1:43:1,42:1:30:42:1497:-132.012,-9.94472,0	0/1:128:72,56:72:2552:56:1997:-141.47,0,-191.398	1/1:134:0,134:0:0:134:4800:-432.155,-40.338,0	1/1:83:0,83:0:0:83:2980:-268.431,-24.9855,0	1/1:59:0,59:0:0:59:2086:-188.006,-17.7608,0	0/1:99:35,64:35:1250:64:2292:-176.739,0,-83.003	1/1:54:0,54:0:0:54:1934:-174.336,-16.2556,0	1/1:347:0,347:0:0:347:12436:-1118.52,-104.457,0	1/1:210:0,210:0:0:210:7532:-677.918,-63.2163,0	1/1:24:0,23:0:0:23:819:-73.643,-6.92369,0	1/1:162:0,161:0:0:161:5780:-519.952,-48.4658,0	1/1:141:0,141:0:0:141:5045:-454.113,-42.4452,0	1/1:165:0,163:0:0:163:5815:-522.779,-49.0679,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:40:16,24:16:574:24:860:-65.6806,0,-39.9532	0/1:8:2,6:2:70:6:216:-17.3823,0,-4.23909	1/1:24:0,24:0:0:24:849:-76.727,-7.22472,0	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	1/1:162:0,158:0:0:158:5676:-510.59,-47.5627,0	0/1:244:140,103:140:4966:103:3678:-257.819,0,-373.691	0/1:71:30,41:30:1073:41:1472:-111.403,0,-75.5097	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:130:67,63:67:2377:63:2247:-163.357,0,-175.044	0/1:38:21,17:21:736:17:608:-43.6129,0,-55.1214	1/1:108:0,108:0:0:108:3872:-348.536,-32.5112,0	1/1:50:0,49:0:0:49:1745:-156.973,-14.7505,0	0/1:54:26,28:26:915:28:993:-73.4265,0,-66.4104	0/1:84:34,50:34:1204:50:1773:-134.546,0,-83.3783	1/1:189:0,188:0:0:188:6714:-603.773,-56.5936,0	1/1:174:1,171:1:36:171:6137:-548.4,-48.5387,0	1/1:80:0,80:0:0:80:2842:-256.015,-24.0824,0	0/1:141:78,63:78:2777:63:2253:-160.586,0,-207.727	0/1:93:53,40:53:1893:40:1417:-99.8296,0,-142.653	0/1:16:7,7:7:252:7:252:-18.4547,0,-18.4547	0/1:141:71,70:71:2533:70:2516:-184.246,0,-185.776	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:118:1,117:1:35:117:4181:-372.853,-32.0229,0	1/1:46:0,44:0:0:44:1569:-141.153,-13.2453,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:21:12,9:12:427:9:324:-23.1842,0,-32.4468	1/1:115:0,115:0:0:115:4132:-372.062,-34.6185,0	1/1:101:0,100:0:0:100:3596:-323.44,-30.103,0	0/1:10:7,3:7:250:3:108:-7.06487,0,-19.8365	1/1:114:0,114:0:0:114:4100:-369.183,-34.3174,0	0/1:200:99,101:99:3529:101:3583:-262.019,0,-257.425	0/1:81:35,46:35:1246:46:1648:-124.225,0,-87.7842	1/1:69:0,69:0:0:69:2471:-222.373,-20.7711,0	1/1:138:1,137:1:36:137:4901:-437.542,-37.9439,0	0/1:82:48,34:48:1720:34:1209:-84.4293,0,-130.401	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:69:37,32:37:1316:32:1148:-82.858,0,-97.9709	1/1:74:0,72:0:0:72:2584:-232.449,-21.6742,0	0/1:24:9,15:9:318:15:536:-41.2939,0,-21.6821	0/1:147:76,68:76:2726:68:2423:-174.631,0,-201.891	0/1:63:28,35:28:995:35:1254:-93.9288,0,-70.9	1/1:183:0,183:0:0:183:6557:-590.003,-55.0885,0	0/1:135:70,65:70:2481:65:2336:-169.742,0,-182.786	0/1:137:73,63:73:2602:63:2268:-162.945,0,-193.008	0/1:88:49,39:49:1727:39:1397:-99.5381,0,-129.224	1/1:21:0,18:0:0:18:640:-57.5913,-5.41854,0	0/1:99:48,51:48:1724:51:1824:-134.639,0,-125.644	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	1/1:200:0,199:0:0:199:7126:-640.975,-59.905,0	0/1:73:36,37:36:1284:37:1328:-97.847,0,-93.8883	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:59:27,31:27:962:31:1112:-82.5811,0,-69.087	0/1:93:39,53:39:1398:53:1903:-143.282,0,-98.1233	0/1:38:13,25:13:462:25:900:-69.8819,0,-30.4773	1/1:72:0,67:0:0:67:2393:-215.269,-20.169,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	0/1:46:24,22:24:854:22:792:-57.7583,0,-63.3333	0/1:107:42,64:42:1495:64:2296:-174.631,0,-102.531	0/1:42:26,16:26:935:16:561:-38.1175,0,-71.766	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:79:0,79:0:0:79:2836:-255.419,-23.7814,0
chr01	34544994	.	G	C	76889.7	PASS	AB=0.534771;ABP=22.4903;AC=143;AF=0.760638;AN=188;AO=3853;CIGAR=1X;DP=4721;DPB=4721;DPRA=0;EPP=8369.69;EPPR=1885.68;GTI=3;LEN=1;MEANALT=1.01064;MQM=40.2276;MQMR=53.6021;NS=94;NUMALT=1;ODDS=0.255696;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136974;QR=30834;RO=867;RPL=3853;RPP=8369.69;RPPR=1885.68;RPR=0;RUN=1;SAF=3853;SAP=8369.69;SAR=0;SRF=867;SRP=1885.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:16,6:16:572:6:216:-12.0091,0,-44.6934	0/1:53:30,23:30:1060:23:828:-54.5075,0,-78.4229	1/1:109:0,109:0:0:109:3867:-323.308,-32.8123,0	1/1:169:1,168:1:36:168:5968:-515.231,-47.2809,0	0/1:20:12,8:12:432:8:280:-17.9608,0,-32.9559	0/1:19:10,9:10:356:9:324:-22.0587,0,-26.5843	1/1:12:0,12:0:0:12:428:-37.4424,-3.61236,0	1/1:79:0,79:0:0:79:2828:-236.035,-23.7814,0	0/1:46:18,28:18:640:28:992:-70.8293,0,-43.9074	0/1:54:18,36:18:629:36:1270:-93.7943,0,-40.5012	1/1:30:0,30:0:0:30:1076:-94.1657,-9.0309,0	1/1:47:0,47:0:0:47:1683:-141.595,-14.1484,0	1/1:34:0,34:0:0:34:1216:-100.641,-10.235,0	0/1:17:9,8:9:324:8:284:-19.8098,0,-24.3502	1/1:39:0,39:0:0:39:1383:-120.677,-11.7402,0	1/1:29:0,29:0:0:29:1032:-88.7246,-8.72987,0	1/1:11:0,11:0:0:11:392:-33.6498,-3.31133,0	1/1:14:0,14:0:0:14:489:-41.0948,-4.21442,0	1/1:20:0,20:0:0:20:711:-60.6633,-6.0206,0	0/1:54:33,21:33:1165:21:744:-49.1969,0,-88.6046	1/1:140:0,140:0:0:140:4949:-424.147,-42.1442,0	1/1:46:0,46:0:0:46:1644:-145.493,-13.8474,0	1/1:46:0,46:0:0:46:1634:-142.96,-13.8474,0	0/1:44:15,29:15:540:29:1040:-76.0841,0,-35.5492	1/1:15:0,15:0:0:15:540:-46.9204,-4.51545,0	1/1:145:0,145:0:0:145:5182:-453.924,-43.6494,0	1/1:142:0,142:0:0:142:5062:-433.982,-42.7463,0	1/1:17:0,17:0:0:17:600:-51.6505,-5.11751,0	1/1:161:1,160:1:36:160:5653:-492.356,-44.8702,0	1/1:70:0,70:0:0:70:2482:-212.951,-21.0721,0	1/1:25:0,25:0:0:25:892:-76.7742,-7.52575,0	1/1:7:0,7:0:0:7:239:-21.0189,-2.10721,0	0/1:21:10,11:10:356:11:392:-26.7781,0,-26.0172	0/1:5:1,4:1:36:4:144:-11.029,0,-1.88245	1/1:15:0,15:0:0:15:500:-42.7396,-4.51545,0	0/1:23:12,11:12:432:11:396:-26.1988,0,-32.0158	1/1:102:0,102:0:0:102:3647:-320.006,-30.7051,0	0/1:56:28,28:28:980:28:987:-68.8151,0,-71.4057	0/1:20:5,15:5:180:15:526:-38.298,0,-10.4899	0/1:6:4,2:4:144:2:72:-3.90636,0,-11.4886	0/1:118:67,51:67:2385:51:1820:-122.26,0,-178.562	0/1:17:8,9:8:284:9:316:-22.6292,0,-20.7514	1/1:71:0,71:0:0:71:2548:-219.829,-21.3731,0	1/1:27:0,27:0:0:27:968:-83.6188,-8.12781,0	0/1:29:11,18:11:392:18:619:-45.7596,0,-26.8587	0/1:53:20,33:20:711:33:1175:-87.7022,0,-48.1105	1/1:64:0,64:0:0:64:2256:-189.91,-19.2659,0	1/1:86:0,86:0:0:86:3033:-261.236,-25.8886,0	1/1:55:0,54:0:0:54:1931:-168.268,-16.2556,0	0/1:68:36,32:36:1279:32:1148:-80.1691,0,-94.6683	0/1:63:26,37:26:923:37:1285:-92.8552,0,-64.3504	0/1:8:3,5:3:104:5:180:-13.6598,0,-6.23195	0/1:82:42,40:42:1504:40:1419:-92.3181,0,-110.45	1/1:21:0,21:0:0:21:744:-65.4782,-6.32163,0	1/1:5:0,5:0:0:5:176:-15.3209,-1.50515,0	1/1:104:0,104:0:0:104:3705:-317.044,-31.3071,0	0/1:22:2,20:2:72:20:720:-55.187,0,-0.209131	0/1:7:6,1:6:216:1:36:-1.42891,0,-17.6763	0/1:10:4,6:4:129:6:207:-15.0582,0,-8.91307	1/1:21:0,21:0:0:21:739:-63.0577,-6.32163,0	1/1:46:1,45:1:36:45:1612:-136.494,-10.2517,0	0/1:3:1,2:1:36:2:72:-5.75204,0,-2.69259	1/1:220:1,219:1:36:219:7824:-681.572,-62.6905,0	0/1:79:38,41:38:1355:41:1465:-104.082,0,-98.1407	0/1:43:11,32:11:396:32:1135:-83.7351,0,-22.8614	1/1:41:0,41:0:0:41:1458:-126.666,-12.3422,0	1/1:102:0,102:0:0:102:3647:-318.57,-30.7051,0	0/1:81:58,23:58:2080:23:824:-47.9436,0,-162.924	1/1:19:0,19:0:0:19:672:-57.7075,-5.71957,0	0/1:13:7,6:7:252:6:212:-13.6163,0,-18.8733	1/1:20:0,20:0:0:20:720:-63.7653,-6.0206,0	0/1:13:3,10:3:108:10:352:-27.2502,0,-6.15451	0/1:54:20,34:20:712:34:1207:-85.7662,0,-48.0007	0/1:65:22,43:22:783:43:1525:-109.36,0,-51.0613	1/1:64:0,64:0:0:64:2262:-194.524,-19.2659,0	0/1:153:71,82:71:2540:82:2911:-204.155,0,-182.466	0/1:24:17,7:17:594:7:243:-13.797,0,-46.2532	0/1:94:36,58:36:1281:58:2041:-144.517,0,-86.6441	1/1:20:0,20:0:0:20:711:-59.833,-6.0206,0	0/1:72:27,45:27:972:45:1603:-117.069,0,-65.891	1/1:40:0,40:0:0:40:1419:-118.622,-12.0412,0	1/1:139:0,139:0:0:139:4962:-429.558,-41.8432,0	0/1:34:17,17:17:595:17:599:-42.0297,0,-43.6034	1/1:28:0,28:0:0:28:993:-85.8859,-8.42884,0	0/1:24:11,13:11:388:13:456:-32.9582,0,-28.0002	0/1:59:26,33:26:923:33:1154:-83.263,0,-65.4549	0/1:13:5,8:5:154:8:288:-20.8161,0,-10.1707	1/1:26:0,26:0:0:26:932:-77.5081,-7.82678,0	1/1:44:0,44:0:0:44:1559:-132.893,-13.2453,0	0/1:17:7,10:7:252:10:360:-25.6647,0,-17.8825	0/1:53:28,25:28:1000:25:879:-60.5267,0,-74.0967	0/1:24:12,12:12:424:12:428:-30.0334,0,-30.3222	1/1:19:0,19:0:0:19:680:-59.0297,-5.71957,0	1/1:60:0,60:0:0:60:2152:-184.077,-18.0618,0
chr01	34567410	.	T	A	82916.2	PASS	AB=0.469751;ABP=20.8766;AC=144;AF=0.765957;AN=188;AO=4105;CIGAR=1X;DP=5308;DPB=5308;DPRA=14.2581;EPP=8916.9;EPPR=2606.61;GTI=1;LEN=1;MEANALT=1;MQM=54.3055;MQMR=59.9401;NS=94;NUMALT=1;ODDS=1.43693;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141843;QR=42854;RO=1203;RPL=4105;RPP=8916.9;RPPR=2615.29;RPR=0;RUN=1;SAF=4105;SAP=8916.9;SAR=0;SRF=1202;SRP=2606.61;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:17,11:17:612:11:384:-26.3517,0,-46.898	0/1:40:22,18:22:768:18:604:-42.4981,0,-57.3964	1/1:28:0,28:0:0:28:974:-87.7189,-8.42884,0	1/1:163:0,163:0:0:163:5671:-508.979,-49.0679,0	0/1:56:31,25:31:1116:25:868:-61.4824,0,-83.894	0/1:61:29,32:29:1044:32:1128:-82.9388,0,-75.912	1/1:91:2,89:2:72:89:3046:-267.198,-20.557,0	1/1:76:0,76:0:0:76:2604:-233.721,-22.8783,0	0/1:93:64,29:64:2278:29:984:-60.519,0,-177.285	0/1:64:29,35:29:1026:35:1190:-88.065,0,-73.3854	1/1:15:0,15:0:0:15:532:-48.0097,-4.51545,0	1/1:35:0,35:0:0:35:1160:-104.139,-10.5361,0	1/1:41:0,41:0:0:41:1432:-128.327,-12.3422,0	0/1:14:8,6:8:288:6:216:-15.548,0,-22.053	1/1:33:0,33:0:0:33:1139:-102.727,-9.93399,0	1/1:29:0,29:0:0:29:1015:-91.5329,-8.72987,0	1/1:17:0,17:0:0:17:596:-53.8072,-5.11751,0	1/1:17:0,17:0:0:17:587:-53.0071,-5.11751,0	1/1:11:0,11:0:0:11:375:-34.0017,-3.31133,0	0/1:148:81,67:81:2881:67:2313:-163.457,0,-214.973	1/1:98:0,98:0:0:98:3341:-299.844,-29.5009,0	1/1:78:0,78:0:0:78:2717:-244.005,-23.4803,0	1/1:61:0,61:0:0:61:2131:-191.654,-18.3628,0	0/1:84:42,42:42:1504:42:1421:-102.38,0,-110.238	1/1:30:1,29:1:32:29:995:-86.5549,-5.83159,0	1/1:174:0,174:0:0:174:5970:-536.498,-52.3792,0	1/1:114:0,114:0:0:114:4021:-361.044,-34.3174,0	1/1:30:0,30:0:0:30:1023:-92.0716,-9.0309,0	1/1:216:0,216:0:0:216:7501:-674.633,-65.0225,0	1/1:40:0,40:0:0:40:1404:-126.371,-12.0412,0	1/1:91:0,91:0:0:91:3148:-283.277,-27.3937,0	1/1:7:0,7:0:0:7:242:-22.0858,-2.10721,0	0/1:3:1,2:1:36:2:63:-5.0746,0,-2.69518	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:2:0,2:0:0:2:68:-6.44461,-0.60206,0	0/1:4:2,2:2:72:2:72:-5.38188,0,-5.6326	1/1:105:1,104:1:36:104:3620:-321.948,-28.0099,0	0/1:129:69,60:69:2431:60:2088:-148.724,0,-180.211	0/1:20:15,5:15:540:5:176:-9.89555,0,-42.9159	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:113:56,57:56:2000:57:1986:-143.868,0,-146.257	0/1:19:10,9:10:345:9:315:-22.7855,0,-25.6613	1/1:89:1,88:1:36:88:3078:-272.445,-23.1934,0	1/1:27:0,27:0:0:27:955:-86.1178,-8.12781,0	0/1:32:17,15:17:612:15:510:-36.5619,0,-45.7781	0/1:95:44,51:44:1576:51:1734:-127.596,0,-113.533	1/1:94:0,94:0:0:94:3245:-290.57,-28.2968,0	1/1:140:1,139:1:36:139:4802:-428.086,-38.5459,0	1/1:33:0,33:0:0:33:1126:-101.482,-9.93399,0	0/1:82:38,44:38:1364:44:1514:-111.707,0,-98.3763	0/1:129:69,60:69:2472:60:2036:-144.436,0,-183.901	0/1:3:1,2:1:36:2:72:-5.9287,0,-2.69518	0/1:38:21,17:21:752:17:604:-43.0958,0,-56.5671	1/1:27:0,27:0:0:27:936:-84.5192,-8.12781,0	1/1:8:0,8:0:0:8:264:-24.0327,-2.40824,0	1/1:64:0,64:0:0:64:2124:-190.817,-19.2659,0	1/1:29:0,29:0:0:29:1012:-91.2966,-8.72987,0	0/1:2:1,1:1:36:1:32:-2.59685,0,-2.99621	0/1:12:10,2:10:360:2:72:-3.22245,0,-29.1319	1/1:33:0,33:0:0:33:1160:-104.449,-9.93399,0	1/1:74:0,74:0:0:74:2552:-229.648,-22.2762,0	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	1/1:123:0,123:0:0:123:4242:-381.635,-37.0267,0	0/1:44:23,21:23:811:21:728:-52.5534,0,-60.0646	0/1:20:12,8:12:424:8:280:-19.1729,0,-32.4758	1/1:65:0,65:0:0:65:2253:-202.8,-19.567,0	1/1:107:0,107:0:0:107:3680:-330.941,-32.2102,0	0/1:32:26,6:26:927:6:199:-8.59316,0,-74.1144	1/1:4:0,4:0:0:4:136:-12.434,-1.20412,0	0/1:49:24,25:24:852:25:860:-62.6607,0,-62.2499	1/1:44:0,44:0:0:44:1521:-136.888,-13.2453,0	0/1:7:3,4:3:104:4:144:-11.1968,0,-7.5956	0/1:146:89,57:89:3178:57:1999:-135.28,0,-242.291	0/1:37:23,14:23:816:14:488:-32.9881,0,-62.5786	1/1:61:0,61:0:0:61:2112:-189.834,-18.3628,0	0/1:94:41,53:41:1467:53:1820:-135.596,0,-104.029	0/1:64:35,29:35:1244:29:998:-70.6095,0,-92.9987	0/1:41:24,17:24:864:17:588:-40.7594,0,-65.7297	1/1:6:0,6:0:0:6:212:-19.1461,-1.80618,0	0/1:104:42,62:42:1504:62:2129:-159.881,0,-104.347	1/1:81:0,81:0:0:81:2782:-249.734,-24.3834,0	1/1:183:1,182:1:36:182:6270:-560.249,-51.4902,0	0/1:67:33,34:33:1148:34:1191:-86.4568,0,-83.4541	1/1:20:0,20:0:0:20:699:-63.1729,-6.0206,0	0/1:39:21,18:21:756:18:613:-43.6764,0,-56.6271	0/1:91:42,49:42:1479:49:1672:-123.207,0,-106.01	0/1:55:25,30:25:896:30:1055:-78.4204,0,-64.4037	1/1:41:0,41:0:0:41:1435:-128.854,-12.3422,0	1/1:36:0,36:0:0:36:1220:-109.586,-10.8371,0	0/1:10:4,6:4:144:6:207:-15.9326,0,-10.3033	0/1:23:13,10:13:464:10:356:-25.4139,0,-35.1738	0/1:52:32,20:32:1127:20:708:-48.2651,0,-86.0839	1/1:7:0,7:0:0:7:235:-21.4544,-2.10721,0	1/1:57:0,57:0:0:57:1991:-179.255,-17.1587,0
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chr01	34624645	.	G	C	16396.9	PASS	AB=0.550087;ABP=40.642;AC=43;AF=0.228723;AN=188;AO=959;CIGAR=1X;DP=4678;DPB=4678;DPRA=0.723655;EPP=2059.48;EPPR=8000.69;GTI=1;LEN=1;MEANALT=1;MQM=59.9906;MQMR=60;NS=94;NUMALT=1;ODDS=0.527881;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34244;QR=132817;RO=3715;RPL=956;RPP=2059.48;RPPR=8000.69;RPR=3;RUN=1;SAF=0;SAP=2085.45;SAR=959;SRF=0;SRP=8070.03;SRR=3715;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:11,17:11:384:17:604:-46.2612,0,-26.4658	0/1:32:16,16:16:564:16:576:-42.542,0,-41.4573	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:144:144,0:144:5146:0:0:0,-43.3483,-463.281	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/0:48:46,0:46:1640:0:0:0,-13.8474,-147.529	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:39:13,26:13:459:26:936:-72.8193,0,-29.9039	0/1:54:26,28:26:936:28:1004:-74.4202,0,-68.3038	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/0:57:57,0:57:2022:0:0:0,-17.1587,-182.252	0/1:42:19,23:19:680:23:828:-62.2009,0,-48.8859	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:36:9,27:9:324:27:949:-74.8857,0,-18.6688	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/0:86:85,1:85:3026:1:36:0,-22.2903,-268.972	0/0:35:33,2:33:1184:2:72:0,-3.69933,-100.032	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:154:154,0:154:5512:0:0:0,-46.3586,-496.206	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.217	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:155:154,0:154:5511:0:0:0,-46.3586,-495.756	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:14:13,1:13:468:1:36:0,-0.616145,-38.8614	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:126:126,0:126:4507:0:0:0,-37.9298,-405.798	0/1:92:44,48:44:1569:48:1717:-127.12,0,-113.805	0/1:28:16,12:16:572:12:428:-30.43,0,-43.3846	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:47:29,18:29:1044:18:620:-41.9717,0,-80.1264	0/1:21:11,10:11:396:10:351:-25.605,0,-29.6611	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:42:25,17:25:900:17:600:-41.6859,0,-68.6778	0/1:46:22,24:22:779:24:856:-63.5137,0,-56.5847	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.384	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/1:57:27,30:27:959:30:1063:-78.8221,0,-69.4667	0/1:20:3,17:3:108:17:598:-48.1254,0,-4.05457	0/1:6:2,4:2:72:4:129:-10.1215,0,-5.03054	0/1:45:22,23:22:788:23:824:-60.937,0,-57.6984	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/0:78:76,2:76:2732:2:72:0,-16.6436,-239.286	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:205:205,0:205:7347:0:0:0,-61.7111,-661.277	0/1:104:44,60:44:1572:60:2148:-162.28,0,-110.464	0/1:47:21,26:21:747:26:932:-70.0505,0,-53.4059	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/1:66:20,46:20:720:46:1648:-128.741,0,-45.2608	0/0:23:21,2:21:752:2:72:0,-0.0869673,-61.1695	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:50:25,25:25:896:25:900:-66.2695,0,-65.9089	0/1:74:43,31:43:1539:31:1112:-78.1151,0,-116.526	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:109:31,78:31:1103:78:2781:-217.717,0,-66.7675	0/1:61:21,40:21:739:40:1436:-111.175,0,-48.4695	0/1:68:35,33:35:1245:33:1180:-86.038,0,-91.8827	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:53:24,29:24:864:29:1040:-77.9598,0,-62.128	0/0:80:79,0:79:2827:0:0:0,-23.7814,-254.308	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/1:58:31,27:31:1107:27:968:-69.9776,0,-82.4804	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:32:16,16:16:567:16:572:-42.1805,0,-41.7278	0/1:85:36,49:36:1287:49:1748:-132.017,0,-90.5452	0/1:31:15,16:15:532:16:568:-42.1199,0,-38.8812	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:47:47,0:47:1666:0:0:0,-14.1484,-150.226	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/1:68:39,29:39:1400:29:1044:-73.8048,0,-105.829	0/1:52:23,29:23:828:29:1032:-77.5399,0,-59.1906	0/0:141:141,0:141:5068:0:0:0,-42.4452,-456.262	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878
chr01	34649228	.	G	T	15534.6	PASS	AB=0.4727;ABP=16.1705;AC=43;AF=0.228723;AN=188;AO=970;CIGAR=1X;DP=5935;DPB=5935;DPRA=0.801337;EPP=2074.74;EPPR=10628.6;GTI=3;LEN=1;MEANALT=1;MQM=59.9495;MQMR=59.9948;NS=94;NUMALT=1;ODDS=0.294419;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34590;QR=177360;RO=4965;RPL=966;RPP=2074.74;RPPR=10628.6;RPR=4;RUN=1;SAF=0;SAP=2109.34;SAR=970;SRF=0;SRP=10784.4;SRR=4965;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:32:22,10:22:792:10:360:-23.1113,0,-61.9727	0/0:77:77,0:77:2726:0:0:0,-23.1793,-245.584	0/0:143:143,0:143:5124:0:0:0,-43.0473,-461.302	0/1:43:28,15:28:995:15:540:-35.9922,0,-76.9197	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.636	0/1:52:25,27:25:892:27:972:-71.2049,0,-64.9461	0/1:42:18,24:18:640:24:860:-65.0786,0,-45.2861	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/1:34:14,20:14:504:20:720:-54.8938,0,-35.4631	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.877	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:112:55,57:55:1971:57:2033:-149.526,0,-143.949	0/0:108:108,0:108:3831:0:0:0,-32.5112,-344.989	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:209:209,0:209:7479:0:0:0,-62.9153,-673.153	0/0:176:176,0:176:6284:0:0:0,-52.9813,-565.653	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:163:163,0:163:5847:0:0:0,-49.0679,-526.34	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:144:144,0:144:5146:0:0:0,-43.3483,-463.281	0/1:78:37,41:37:1320:41:1468:-108.936,0,-95.6216	0/1:27:8,19:8:288:19:680:-53.4014,0,-18.1396	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:56:31,25:31:1112:25:885:-63.1088,0,-83.5337	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.895	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:39:14,25:14:487:25:894:-69.0396,0,-32.419	0/1:96:46,50:46:1652:50:1784:-131.944,0,-120.07	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.899	0/0:121:121,0:121:4309:0:0:0,-36.4246,-387.987	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:70:44,26:44:1584:26:936:-63.4874,0,-121.779	0/1:62:35,27:35:1247:27:953:-67.4195,0,-93.8702	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:51:28,23:28:992:23:813:-58.1366,0,-74.2419	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:120:120,0:120:4253:0:0:0,-36.1236,-382.951	0/0:30:28,2:28:1000:2:72:0,-2.19418,-83.4787	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:169:168,1:168:6007:1:36:0,-47.2758,-537.137	0/1:105:63,42:63:2252:42:1493:-103.054,0,-171.335	0/1:23:15,8:15:540:8:273:-17.9765,0,-42.0128	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:124:122,2:122:4368:2:72:0,-30.491,-386.371	0/1:95:38,57:38:1364:57:1982:-150.049,0,-94.4629	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:25:12,13:12:432:13:464:-34.5718,0,-31.6954	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:48:24,24:24:860:24:864:-63.6331,0,-63.2724	0/1:66:33,33:33:1165:33:1188:-87.3606,0,-85.287	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.665	0/1:68:39,29:39:1396:29:1017:-71.3617,0,-105.469	0/1:207:150,57:150:5376:57:2028:-120.478,0,-421.658	0/1:79:49,30:49:1740:30:1080:-73.7319,0,-133.103	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:61:37,24:37:1328:24:849:-58.365,0,-101.459	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.178	0/0:220:218,2:218:7748:2:57:0,-60.8133,-691.941	0/1:52:29,23:29:1032:23:828:-59.1906,0,-77.5399	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:35:13,22:13:468:22:792:-61.0696,0,-31.9236	0/1:90:44,46:44:1576:46:1656:-122.236,0,-115.039	0/1:19:8,11:8:284:11:396:-30.2632,0,-20.1838	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:77:33,44:33:1171:44:1561:-117.6,0,-82.5174	0/1:57:14,43:14:504:43:1540:-121.734,0,-28.5394	0/0:122:122,0:122:4322:0:0:0,-36.7257,-389.157	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.186
chr01	34674150	.	C	T	302289	PASS	AB=0.460294;ABP=75.7812;AC=146;AF=0.776596;AN=188;AO=11004;CIGAR=1X;DP=13909;DPB=13909;DPRA=0;EPP=23889.2;EPPR=6304.62;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.7809;MQMR=59.9841;NS=94;NUMALT=1;ODDS=5.21416;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=392496;QR=102708;RO=2902;RPL=5362;RPP=18.4814;RPPR=4.88097;RPR=5642;RUN=1;SAF=5361;SAP=18.7032;SAR=5643;SRF=1476;SRP=4.88097;SRR=1426;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:90:42,48:42:1491:48:1716:-127.633,0,-107.391	0/1:128:65,63:65:2312:63:2255:-164.662,0,-169.798	1/1:235:2,233:2:72:233:8297:-739.701,-63.9053,0	1/1:404:4,400:4:140:400:14218:-1266.31,-108.672,0	0/1:116:58,58:58:2061:58:2059:-150.657,0,-150.84	0/1:35:23,12:23:809:12:432:-28.6851,0,-62.5923	1/1:104:0,104:0:0:104:3701:-333.103,-31.3071,0	1/1:219:1,218:1:36:218:7780:-696.594,-62.3273,0	0/1:173:80,93:80:2822:93:3332:-248.001,0,-202.14	0/1:127:74,53:74:2638:53:1899:-132.956,0,-199.435	1/1:126:0,126:0:0:126:4472:-402.505,-37.9298,0	1/1:204:0,204:0:0:204:7224:-650.189,-61.4101,0	1/1:151:0,151:0:0:151:5381:-484.41,-45.4555,0	0/1:140:80,60:80:2791:60:2133:-150.056,0,-209.285	1/1:147:0,147:0:0:147:5256:-473.173,-44.2514,0	1/1:140:1,139:1:36:139:4927:-439.982,-38.5459,0	1/1:85:0,85:0:0:85:3032:-273.109,-25.5876,0	1/1:75:0,75:0:0:75:2670:-240.543,-22.5773,0	1/1:47:0,47:0:0:47:1673:-150.826,-14.1484,0	0/1:331:204,127:204:7268:127:4503:-305.667,0,-554.531	1/1:278:0,278:0:0:278:9889:-887.887,-83.6863,0	1/1:100:0,100:0:0:100:3556:-320.245,-30.103,0	1/1:173:1,172:1:36:172:6127:-547.658,-48.4799,0	0/1:123:47,76:47:1684:76:2711:-206.778,0,-114.82	1/1:116:1,115:1:36:115:4117:-367.019,-31.3212,0	1/1:338:3,334:3:108:334:11941:-1064.18,-91.7318,0	1/1:414:0,414:0:0:414:14758:-1327.93,-124.626,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:389:0,389:0:0:389:13886:-1249.51,-117.101,0	1/1:140:0,140:0:0:140:5028:-452.653,-42.1442,0	1/1:173:1,172:1:36:172:6133:-547.11,-48.4799,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	0/1:14:5,9:5:180:9:309:-23.9263,0,-12.3376	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:362:0,362:0:0:362:12893:-1160.17,-108.973,0	0/1:130:59,71:59:2081:71:2514:-187.374,0,-148.425	0/1:85:36,49:36:1262:49:1752:-131.695,0,-88.2934	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:206:85,121:85:2998:121:4325:-327.38,0,-208.041	0/1:49:21,28:21:743:28:990:-74.6397,0,-52.4429	1/1:231:1,230:1:32:230:8216:-736.247,-66.3386,0	1/1:152:1,151:1:36:151:5388:-481.443,-42.1583,0	0/1:139:71,67:71:2499:67:2399:-174.272,0,-183.407	0/1:136:68,68:68:2436:68:2436:-178.555,0,-178.555	1/1:209:3,206:3:108:206:7343:-650.037,-52.8401,0	1/1:279:3,275:3:108:275:9854:-873.185,-73.8886,0	1/1:114:1,113:1:36:113:4034:-359.221,-30.7191,0	0/1:185:90,95:90:3216:95:3404:-250.869,0,-233.972	0/1:117:64,53:64:2248:53:1893:-135.389,0,-167.359	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:200:112,88:112:3997:88:3160:-224.228,0,-299.713	1/1:62:0,62:0:0:62:2216:-199.703,-18.6639,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:228:1,227:1:36:227:8113:-726.551,-65.0366,0	1/1:90:1,89:1:36:89:3177:-282.554,-23.4944,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	1/1:111:1,110:1:36:110:3904:-347.691,-29.8161,0	1/1:143:1,142:1:36:142:5071:-452.929,-39.449,0	0/1:6:3,3:3:93:3:108:-8.26899,0,-6.87055	1/1:235:0,235:0:0:235:8385:-754.021,-70.7421,0	0/1:244:125,119:125:4397:119:4276:-311.546,0,-322.455	0/1:69:29,40:29:1011:40:1424:-107.496,0,-70.5266	1/1:149:0,149:0:0:149:5335:-480.18,-44.8535,0	1/1:188:4,184:4:140:184:6573:-578.679,-43.6491,0	0/1:214:155,59:155:5479:59:2099:-124.546,0,-428.82	1/1:68:0,68:0:0:68:2412:-217.18,-20.47,0	0/1:96:48,48:48:1724:48:1717:-125.915,0,-126.547	1/1:108:0,108:0:0:108:3867:-348.215,-32.5112,0	0/1:33:15,18:15:536:18:640:-47.9907,0,-38.6408	0/1:115:66,49:66:2308:49:1744:-122.607,0,-173.362	0/1:153:84,69:84:2985:69:2448:-174.07,0,-222.824	1/1:271:0,271:0:0:271:9666:-869.303,-81.5791,0	0/1:267:140,127:140:4974:127:4518:-326.414,0,-367.437	0/1:176:103,73:103:3625:73:2590:-180.363,0,-273.473	0/1:221:112,109:112:3994:109:3915:-284.434,0,-293.102	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:237:137,100:137:4842:100:3584:-251.422,0,-364.583	1/1:208:2,206:2:72:206:7341:-653.897,-55.7775,0	1/1:361:0,361:0:0:361:12886:-1159.52,-108.672,0	0/1:122:68,54:68:2406:54:1928:-137.071,0,-180.071	1/1:147:1,146:1:32:146:5220:-466.74,-41.0521,0	0/1:123:75,48:75:2651:48:1694:-114.44,0,-201.808	0/1:232:123,109:123:4330:109:3875:-279.097,0,-320.041	0/1:49:27,22:27:951:22:788:-56.2647,0,-71.1538	1/1:122:0,122:0:0:122:4359:-392.484,-36.7257,0	1/1:141:1,140:1:32:140:4952:-441.705,-39.2459,0	0/1:84:48,36:48:1694:36:1288:-90.9371,0,-127.458	0/1:151:92,59:92:3212:59:2097:-143.511,0,-243.847	0/1:165:117,48:117:4152:48:1720:-105.415,0,-324.194	1/1:224:0,224:0:0:224:8028:-722.506,-67.4307,0	1/1:231:0,231:0:0:231:8218:-739.596,-69.5379,0
chr01	34705817	.	GTTA	ATTG,ATTA	172435	PASS	AB=0.448415,0.549856;ABP=83.2134,77.9267;AC=142,44;AF=0.763441,0.236559;AN=186;AO=6102,1923;CIGAR=1X2M1X,1X3M;DP=8044;DPB=8044.25;DPRA=22.0769,1.03304;EPP=13253.3,4178.75;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.71429,2.125;MQM=59.4535,59.9438;MQMR=0;NS=93;NUMALT=2;ODDS=0.00975116;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=32,0;PQR=0;PRO=0;QA=215819,68881;QR=0;RO=0;RPL=0,0;RPP=13253.3,4178.75;RPPR=0;RPR=6102,1923;RUN=1,1;SAF=6102,1923;SAP=13253.3,4178.75;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,16,26:0:0:16,26:567,932:-122.547,-76.3721,-71.5556,-46.5303,0,-38.7035	1/2:136:0,51,85:0:0:51,85:1831,3053:-398.762,-249.411,-234.058,-149.71,0,-124.123	1/1:114:0,114,0:0:0:114,0:4034,0:-362.957,-34.3174,0,-362.957,-34.3174,-362.957	1/1:172:0,170,1:0:0:170,1:6002,36:-538.772,-51.1751,0,-535.834,-48.2377,-535.533	1/2:45:0,16,29:0:0:16,29:569,1025:-130.195,-83.8308,-79.0143,-46.7189,0,-37.989	1/2:26:0,8,18:0:0:8,18:288,644:-76.3475,-52.8721,-50.4638,-23.8344,0,-18.4159	1/1:84:0,84,0:0:0:84,0:2964,0:-266.961,-25.2865,0,-266.961,-25.2865,-266.961	1/1:105:0,105,0:0:0:105,0:3726,0:-335.475,-31.6082,0,-335.475,-31.6082,-335.475	1/2:103:0,56,47:0:0:56,47:2010,1681:-301.33,-137.428,-120.57,-164.261,0,-150.112	1/2:98:0,38,60:0:0:38,60:1361,2156:-287.144,-176.245,-164.806,-111.257,0,-93.1951	1/1:51:0,50,0:0:0:50,0:1756,0:-157.944,-15.0515,0,-157.944,-15.0515,-157.944	1/1:75:0,75,0:0:0:75,0:2642,0:-237.872,-22.5773,0,-237.872,-22.5773,-237.872	1/1:100:0,99,0:0:0:99,0:3508,0:-315.561,-29.802,0,-315.561,-29.802,-315.561	1/2:70:0,46,24:0:0:46,24:1612,849:-200.15,-69.4815,-55.6341,-131.02,0,-123.795	1/1:76:0,75,0:0:0:75,0:2676,0:-240.716,-22.5773,0,-240.716,-22.5773,-240.716	1/1:57:0,57,0:0:0:57,0:2020,0:-181.87,-17.1587,0,-181.87,-17.1587,-181.87	1/1:65:0,65,0:0:0:65,0:2302,0:-207.396,-19.567,0,-207.396,-19.567,-207.396	1/1:57:0,57,0:0:0:57,0:2042,0:-183.375,-17.1587,0,-183.375,-17.1587,-183.375	1/1:39:0,39,0:0:0:39,0:1390,0:-125.369,-11.7402,0,-125.369,-11.7402,-125.369	1/2:244:0,111,133:0:0:111,133:3921,4776:-708.835,-389.958,-356.544,-319.232,0,-279.195	1/1:140:0,139,0:0:0:139,0:4889,0:-439.804,-41.8432,0,-439.804,-41.8432,-439.804	1/1:119:0,119,0:0:0:119,0:4221,0:-380.005,-35.8226,0,-380.005,-35.8226,-380.005	1/1:66:0,65,1:0:0:65,1:2281,36:-205.184,-19.567,0,-202.246,-16.2697,-201.945	1/2:96:0,55,41:0:0:55,41:1923,1472:-276.85,-120.431,-103.874,-156.775,0,-144.433	1/1:54:0,54,0:0:0:54,0:1918,0:-172.764,-16.2556,0,-172.764,-16.2556,-172.764	1/1:272:0,272,0:0:0:272,0:9581,0:-861.481,-81.8802,0,-861.481,-81.8802,-861.481	1/1:132:0,131,0:0:0:131,0:4656,0:-418.679,-39.4349,0,-418.679,-39.4349,-418.679	1/1:36:0,36,0:0:0:36,0:1294,0:-115.981,-10.8371,0,-115.981,-10.8371,-115.981	1/1:190:0,190,0:0:0:190,0:6760,0:-608.469,-57.1957,0,-608.469,-57.1957,-608.469	1/1:87:0,87,0:0:0:87,0:3073,0:-276.541,-26.1896,0,-276.541,-26.1896,-276.541	1/1:118:0,117,0:0:0:117,0:4160,0:-374.303,-35.2205,0,-374.303,-35.2205,-374.303	1/1:3:0,3,0:0:0:3,0:101,0:-9.42313,-0.90309,0,-9.42313,-0.90309,-9.42313	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	.:.:.:.:.:.:.:.	1/1:211:0,211,0:0:0:211,0:7414,0:-667.297,-63.5173,0,-667.297,-63.5173,-667.297	1/2:182:0,83,99:0:0:83,99:2932,3514:-525.428,-286.667,-261.681,-239.115,0,-209.313	1/2:68:0,40,28:0:0:40,28:1413,1008:-197.658,-82.6075,-70.5663,-115.408,0,-106.979	1/1:2:0,2,0:0:0:2,0:67,0:-6.36304,-0.60206,0,-6.36304,-0.60206,-6.36304	1/2:159:0,66,93:0:0:66,93:2364,3340:-465.594,-272.821,-252.953,-193.132,0,-165.136	1/2:38:0,23,15:0:0:23,15:812,540:-110.529,-44.4165,-37.4928,-66.4701,0,-61.9546	1/1:101:0,101,0:0:0:101,0:3537,0:-318.52,-30.404,0,-318.52,-30.404,-318.52	1/1:72:0,71,0:0:0:71,0:2534,0:-227.812,-21.3731,0,-227.812,-21.3731,-227.812	1/2:58:0,31,26:0:0:31,26:1070,936:-163.346,-76.4305,-67.0986,-86.9663,0,-79.1395	1/2:76:0,29,47:0:0:29,47:992,1688:-218.121,-138.059,-129.329,-80.41,0,-66.2616	1/1:97:0,97,0:0:0:97,0:3466,0:-312.083,-29.1999,0,-312.083,-29.1999,-312.083	1/1:67:0,67,0:0:0:67,0:2388,0:-215.171,-20.169,0,-215.171,-20.169,-215.171	1/1:87:0,87,0:0:0:87,0:3082,0:-277.495,-26.1896,0,-277.495,-26.1896,-277.495	1/2:132:0,54,77:0:0:54,77:1907,2753:-379.872,-224.58,-208.324,-155.395,0,-132.216	1/2:159:0,45,114:0:0:45,114:1568,4077:-460.25,-332.742,-319.195,-127.86,0,-93.5422	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:122:0,39,82:0:0:39,82:1383,2940:-352.491,-239.83,-228.089,-112.697,0,-88.0124	1/1:34:0,33,0:0:0:33,0:1166,0:-104.963,-9.93399,0,-104.963,-9.93399,-104.963	1/1:12:0,12,0:0:0:12,0:432,0:-39.1926,-3.61236,0,-39.1926,-3.61236,-39.1926	1/1:85:0,84,1:0:0:84,1:2947,36:-264.434,-25.2865,0,-261.496,-21.9893,-261.195	1/1:36:0,36,0:0:0:36,0:1259,0:-113.606,-10.8371,0,-113.606,-10.8371,-113.606	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515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chr01	34706090	.	T	C	14677.4	PASS	AB=0.536842;ABP=20.9307;AC=41;AF=0.222826;AN=184;AO=822;CIGAR=1X;DP=3762;DPB=3762;DPRA=0.856475;EPP=1593.77;EPPR=6210.26;GTI=1;LEN=1;MEANALT=1.02222;MQM=60;MQMR=59.9986;NS=92;NUMALT=1;ODDS=0.135575;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29341;QR=104910;RO=2938;RPL=23;RPP=1593.77;RPPR=6218.83;RPR=799;RUN=1;SAF=822;SAP=1787.96;SAR=0;SRF=2937;SRP=6374.11;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:56:36,20:36:1273:20:720:-48.2711,0,-98.0132	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.987	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:13:12,1:12:417:1:36:0,-0.315115,-34.2619	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/0:43:43,0:43:1518:0:0:0,-12.9443,-136.909	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:51:27,24:27:968:24:864:-62.73,0,-72.0848	0/1:60:23,37:23:824:37:1320:-101.04,0,-56.4215	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:35:16,19:16:563:19:680:-50.9931,0,-40.4631	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.763	0/1:57:36,21:36:1296:21:737:-49.4919,0,-99.7852	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:36:35,1:35:1247:1:36:0,-7.2388,-108.936	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:43:42,0:42:1504:0:0:0,-12.6433,-135.441	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:92:92,0:92:3278:0:0:0,-27.6948,-295.237	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:32:32,0:32:1137:0:0:0,-9.63296,-102.637	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/1:23:16,7:16:572:7:252:-16.1053,0,-44.8897	0/1:33:22,11:22:788:11:396:-26.0488,0,-61.3108	.:.:.:.:.:.:.:.	0/1:48:23,25:23:824:25:896:-66.5109,0,-60.0339	0/1:12:10,2:10:360:2:68:-2.84535,0,-29.1319	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/1:14:5,9:5:180:9:315:-24.4728,0,-12.3376	0/1:43:19,24:19:684:24:858:-64.5973,0,-48.946	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:56:55,1:55:1938:1:36:0,-13.2594,-171.094	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:42:11,31:11:396:31:1112:-87.7481,0,-23.3395	0/1:36:9,27:9:324:27:953:-75.2462,0,-18.6688	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:40:19,21:19:680:21:756:-56.326,0,-49.488	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:34:34,0:34:1186:0:0:0,-10.235,-107.041	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	.:.:.:.:.:.:.:.	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:31:31,0:31:1086:0:0:0,-9.33193,-98.045	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/1:86:36,49:36:1288:49:1760:-132.883,0,-90.4221	0/1:41:19,22:19:684:22:780:-58.1802,0,-49.5481	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/0:70:67,3:67:2366:3:108:0,-10.9969,-203.121	0/1:105:38,67:38:1315:67:2392:-183.929,0,-87.0351	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:13:3,10:3:108:10:351:-28.0133,0,-6.16178	0/1:69:35,34:35:1252:34:1216:-88.9755,0,-92.214	0/1:55:27,28:27:972:28:992:-73.0377,0,-71.2413	0/0:97:97,0:97:3441:0:0:0,-29.1999,-309.901	0/1:68:27,41:27:949:41:1460:-111.226,0,-65.2527	0/1:39:29,10:29:1021:10:360:-21.0041,0,-80.4601	0/1:45:13,32:13:453:32:1144:-89.7232,0,-27.5533	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:41:18,23:18:648:23:820:-61.7803,0,-46.3097	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.786	0/1:22:11,11:11:381:11:392:-28.9974,0,-27.998	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:29:15,14:15:532:14:492:-35.8825,0,-39.4832	0/1:78:40,38:40:1436:38:1352:-98.4987,0,-106.057	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:23:10,13:10:345:13:468:-35.536,0,-24.4571	0/1:78:29,49:29:1040:49:1764:-135.563,0,-70.434	0/1:59:17,42:17:612:42:1475:-115.283,0,-37.6527	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562
chr01	34706213	.	C	G	123564	PASS	AB=0.659314;ABP=452.739;AC=147;AF=0.790323;AN=186;AO=5709;CIGAR=1X;DP=6416;DPB=6416;DPRA=0;EPP=12399.9;EPPR=1523.04;GTI=10;LEN=1;MEANALT=1.06452;MQM=59.9765;MQMR=59.9886;NS=93;NUMALT=1;ODDS=1.68594;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202502;QR=24980;RO=700;RPL=5709;RPP=12399.9;RPPR=1523.04;RPR=0;RUN=1;SAF=0;SAP=12399.9;SAR=5709;SRF=0;SRP=1523.04;SRR=700;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:5,7:5:180:7:236:-17.9553,0,-12.9397	0/1:45:12,33:12:432:33:1172:-92.2411,0,-25.6748	1/1:111:0,111:0:0:111:3938:-354.615,-33.4143,0	1/1:210:1,209:1:36:209:7393:-661.602,-59.618,0	1/1:21:1,20:1:36:20:712:-60.8084,-2.72336,0	0/1:19:3,16:3:108:16:568:-45.7323,0,-4.3556	1/1:81:0,81:0:0:81:2877:-259.166,-24.3834,0	1/1:103:0,103:0:0:103:3680:-331.4,-31.0061,0	0/1:48:15,33:15:528:33:1182:-92.2388,0,-33.4019	0/1:50:20,30:20:716:30:1068:-81.3806,0,-49.7162	1/1:63:0,63:0:0:63:2239:-201.773,-18.9649,0	1/1:71:0,71:0:0:71:2484:-223.813,-21.3731,0	1/1:62:0,62:0:0:62:2195:-197.816,-18.6639,0	0/1:89:45,44:45:1608:44:1555:-113.449,0,-118.218	1/1:68:0,68:0:0:68:2420:-218.057,-20.47,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:69:0,69:0:0:69:2459:-221.564,-20.7711,0	1/1:96:0,96:0:0:96:3387:-305.048,-28.8989,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:78:12,66:12:424:66:2356:-188.819,0,-15.0161	1/1:70:0,70:0:0:70:2508:-225.843,-21.0721,0	1/1:83:0,83:0:0:83:2948:-265.555,-24.9855,0	1/1:120:0,120:0:0:120:4252:-382.852,-36.1236,0	0/1:46:8,38:8:284:38:1364:-109.213,0,-12.056	1/1:39:0,39:0:0:39:1375:-124.049,-11.7402,0	1/1:181:1,179:1:36:179:6360:-568.898,-50.947,0	1/1:150:0,150:0:0:150:5313:-478.309,-45.1545,0	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	1/1:208:0,208:0:0:208:7403:-666.321,-62.6142,0	1/1:79:0,79:0:0:79:2797:-251.971,-23.7814,0	1/1:101:0,101:0:0:101:3612:-325.286,-30.404,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:137:0,137:0:0:137:4854:-437.02,-41.2411,0	0/1:113:39,74:39:1392:74:2624:-202.39,0,-91.5626	0/1:38:12,26:12:432:26:932:-72.7597,0,-27.7821	.:.:.:.:.:.:.:.	0/1:68:13,55:13:453:55:1941:-154.495,0,-20.6296	0/1:30:12,18:12:432:18:631:-48.0848,0,-30.1903	1/1:94:0,94:0:0:94:3348:-301.537,-28.2968,0	1/1:37:0,37:0:0:37:1303:-117.571,-11.1381,0	0/1:38:22,16:22:792:16:553:-38.6554,0,-60.1665	0/1:56:14,42:14:504:42:1480:-116.637,0,-28.8404	1/1:85:1,84:1:36:84:2981:-264.897,-21.9893,0	1/1:147:0,146:0:0:146:5180:-465.986,-43.9504,0	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0	0/1:96:32,64:32:1140:64:2269:-175.572,0,-74.0103	0/1:59:12,47:12:428:47:1672:-133.007,0,-21.098	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:57:7,50:7:252:50:1780:-143.324,0,-5.87025	1/1:46:0,46:0:0:46:1613:-145.457,-13.8474,0	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	1/1:149:0,149:0:0:149:5259:-473.451,-44.8535,0	1/1:34:0,34:0:0:34:1204:-108.666,-10.235,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:89:0,89:0:0:89:3164:-284.985,-26.7917,0	1/1:80:1,79:1:36:79:2823:-250.71,-20.4841,0	1/1:10:0,8:0:0:8:284:-25.6045,-2.40824,0	1/1:193:0,193:0:0:193:6854:-616.908,-58.0988,0	0/1:97:24,73:24:864:73:2589:-204.059,0,-48.8827	0/1:61:17,44:17:600:44:1568:-123.049,0,-35.9664	1/1:104:0,104:0:0:104:3674:-330.863,-31.3071,0	1/1:88:0,88:0:0:88:3118:-280.848,-26.4906,0	0/1:51:29,22:29:1040:22:780:-55.1705,0,-78.5618	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	0/1:46:17,29:17:604:29:1020:-78.2648,0,-40.8432	1/1:72:0,72:0:0:72:2568:-231.37,-21.6742,0	0/1:16:5,11:5:176:11:396:-31.1663,0,-11.3685	0/1:84:34,50:34:1216:50:1776:-134.836,0,-84.4568	0/1:46:15,31:15:532:31:1107:-86.0934,0,-34.3657	1/1:115:0,115:0:0:115:4072:-366.671,-34.6185,0	0/1:97:27,70:27:956:70:2455:-192.007,0,-57.1558	1/1:42:1,41:1:36:41:1424:-124.855,-9.04499,0	0/1:122:32,90:32:1140:90:3139:-246.013,0,-66.1835	1/1:20:0,19:0:0:19:680:-61.1694,-5.71957,0	0/1:61:16,45:16:576:45:1597:-125.656,0,-33.8122	1/1:110:0,110:0:0:110:3904:-351.557,-33.1133,0	1/1:156:0,156:0:0:156:5497:-494.865,-46.9607,0	0/1:40:19,21:19:680:21:735:-54.4302,0,-49.488	1/1:76:0,76:0:0:76:2704:-243.605,-22.8783,0	0/1:52:25,27:25:892:27:952:-70.3416,0,-64.9461	0/1:91:42,49:42:1512:49:1751:-130.48,0,-108.981	0/1:11:2,9:2:72:9:307:-24.6489,0,-3.52539	1/1:57:0,56:0:0:56:1991:-179.104,-16.8577,0	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	0/1:64:28,36:28:988:36:1284:-96.5975,0,-69.968	0/1:95:43,52:43:1532:52:1851:-138.271,0,-109.575	0/1:43:29,13:29:1027:13:460:-28.7327,0,-79.7393	1/1:97:0,97:0:0:97:3456:-311.254,-29.1999,0	1/1:59:0,59:0:0:59:2095:-188.819,-17.7608,0
chr01	34729069	.	A	G	124415	PASS	AB=0.496217;ABP=3.40462;AC=141;AF=0.758065;AN=186;AO=5832;CIGAR=1X;DP=7446;DPB=7446;DPRA=40.8901;EPP=12667;EPPR=3503.42;GTI=3;LEN=1;MEANALT=1.02198;MQM=59.9796;MQMR=59.9926;NS=93;NUMALT=1;ODDS=1.39127;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208249;QR=57706;RO=1612;RPL=0;RPP=12667;RPPR=3503.42;RPR=5832;RUN=1;SAF=5832;SAP=12667;SAR=0;SRF=1612;SRP=3503.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	0/1:122:47,75:47:1684:75:2686:-205.259,0,-115.121	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:185:0,185:0:0:185:6613:-595.242,-55.6906,0	0/1:42:21,21:21:752:21:752:-55.363,0,-55.363	0/1:20:5,15:5:176:15:540:-42.9159,0,-10.1644	1/1:69:1,68:1:21:68:2414:-215.413,-18.6711,0	1/1:129:0,129:0:0:129:4636:-417.401,-38.8329,0	0/1:69:32,37:32:1136:37:1332:-99.4113,0,-81.7778	0/1:109:66,43:66:2333:43:1536:-105.692,0,-177.417	1/1:82:0,82:0:0:82:2914:-262.493,-24.6845,0	1/1:82:0,82:0:0:82:2932:-264.115,-24.6845,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	0/1:93:50,43:50:1792:43:1524:-109.457,0,-133.562	1/1:67:0,67:0:0:67:2393:-215.625,-20.169,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:74:0,74:0:0:74:2649:-238.654,-22.2762,0	1/1:89:0,89:0:0:89:3168:-285.344,-26.7917,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:128:80,48:80:2868:48:1694:-114.21,0,-219.825	1/1:83:0,83:0:0:83:2950:-265.731,-24.9855,0	1/1:78:1,77:1:36:77:2738:-243.062,-19.8821,0	1/1:36:1,35:1:36:35:1252:-109.387,-7.23881,0	0/1:145:51,94:51:1813:94:3353:-258.336,0,-119.8	1/1:68:1,67:1:36:67:2395:-212.204,-16.8718,0	1/1:230:0,230:0:0:230:8181:-736.302,-69.2369,0	1/1:196:0,196:0:0:196:7013:-631.225,-59.0019,0	1/1:43:0,43:0:0:43:1525:-137.542,-12.9443,0	1/1:168:0,168:0:0:168:5982:-538.486,-50.573,0	1/1:129:0,129:0:0:129:4628:-416.679,-38.8329,0	1/1:65:0,64:0:0:64:2274:-204.56,-19.2659,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:210:0,210:0:0:210:7494:-674.502,-63.2163,0	0/1:130:70,60:70:2516:60:2133:-153.103,0,-187.558	0/1:92:39,53:39:1392:53:1904:-143.943,0,-97.8843	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:78:48,30:48:1724:30:1057:-71.9586,0,-131.965	0/1:44:24,20:24:860:20:720:-51.8835,0,-64.4765	1/1:103:0,103:0:0:103:3658:-329.418,-31.0061,0	1/1:105:0,105:0:0:105:3735:-336.347,-31.6082,0	0/1:83:44,39:44:1561:39:1397:-101.043,0,-115.794	0/1:78:28,50:28:1004:50:1777:-136.731,0,-67.1955	1/1:60:0,60:0:0:60:2125:-191.386,-18.0618,0	1/1:88:1,87:1:36:87:3085:-274.28,-22.8924,0	1/1:101:0,101:0:0:101:3601:-324.296,-30.404,0	0/1:96:46,50:46:1652:50:1781:-131.672,0,-120.07	0/1:185:101,84:101:3616:84:2997:-214.27,0,-269.955	0/1:8:2,6:2:72:6:201:-16.0088,0,-4.42848	0/1:107:60,47:60:2137:47:1665:-117.925,0,-160.386	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:78:0,78:0:0:78:2755:-248.188,-23.4803,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:146:1,145:1:36:145:5208:-465.258,-40.3521,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:182:0,182:0:0:182:6504:-585.445,-54.7875,0	0/1:128:61,67:61:2192:67:2381:-176.014,0,-159.014	0/1:56:30,26:30:1072:26:921:-66.3475,0,-79.9348	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:152:3,149:3:108:149:5333:-470.024,-35.6814,0	0/1:43:31,12:31:1112:12:432:-26.2745,0,-87.4471	1/1:27:0,27:0:0:27:962:-86.8938,-8.12781,0	0/1:41:22,19:22:792:19:680:-49.1869,0,-59.2634	1/1:85:0,85:0:0:85:3037:-273.558,-25.5876,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:75:33,42:33:1180:42:1500:-112.717,0,-83.9308	0/1:60:28,32:28:1004:32:1152:-85.9283,0,-72.6141	1/1:52:0,52:0:0:52:1841:-165.968,-15.6536,0	0/1:142:61,81:61:2192:81:2908:-219.208,0,-154.799	0/1:80:29,51:29:1036:51:1817:-139.727,0,-69.4715	0/1:101:60,41:60:2137:41:1449:-100.3,0,-162.192	1/1:11:0,10:0:0:10:356:-32.0218,-3.0103,0	0/1:70:41,29:41:1472:29:1040:-72.8423,0,-111.704	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:100:0,100:0:0:100:3592:-323.486,-30.103,0	0/1:120:66,54:66:2372:54:1921:-137.042,0,-177.611	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	0/1:109:49,60:49:1764:60:2156:-161.495,0,-126.231	0/1:181:93,88:93:3344:88:3149:-229.147,0,-246.69	0/1:51:32,19:32:1148:19:680:-46.1766,0,-88.2773	1/1:92:0,92:0:0:92:3288:-296.139,-27.6948,0	1/1:81:0,81:0:0:81:2903:-261.505,-24.3834,0	0/1:33:7,26:7:252:26:924:-73.5437,0,-13.095	0/1:98:52,46:52:1860:46:1656:-119.827,0,-138.179	0/1:92:61,31:61:2192:31:1104:-71.9759,0,-169.851	1/1:81:1,80:1:36:80:2876:-255.478,-20.7852,0	1/1:105:0,105:0:0:105:3756:-338.236,-31.6082,0
chr01	34729186	.	G	A	134184	PASS	AB=0.485878;ABP=8.16225;AC=144;AF=0.765957;AN=188;AO=6218;CIGAR=1X;DP=7763;DPB=7763;DPRA=0;EPP=13479.2;EPPR=3323.24;GTI=3;LEN=1;MEANALT=1.04255;MQM=59.9775;MQMR=60;NS=94;NUMALT=1;ODDS=1.34574;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222094;QR=54933;RO=1541;RPL=6215;RPP=13479.2;RPPR=3323.24;RPR=3;RUN=1;SAF=0;SAP=13505.2;SAR=6218;SRF=0;SRP=3349.25;SRR=1541;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:36,17:36:1288:17:612:-39.4588,0,-100.269	0/1:48:29,19:29:1036:19:684:-47.4409,0,-79.1045	1/1:113:0,112:0:0:112:3988:-358.899,-33.7154,0	1/1:201:0,201:0:0:201:7208:-648.744,-60.507,0	0/1:51:27,24:27:963:24:864:-62.73,0,-71.6334	0/1:25:11,14:11:388:14:500:-37.8104,0,-27.7316	1/1:76:2,74:2:72:74:2647:-231.639,-16.0416,0	1/1:100:0,100:0:0:100:3554:-320.069,-30.103,0	0/1:75:39,36:39:1383:36:1288:-93.6463,0,-102.191	0/1:71:30,41:30:1076:41:1445:-108.971,0,-75.7797	1/1:78:0,78:0:0:78:2808:-252.873,-23.4803,0	1/1:142:0,142:0:0:142:5086:-457.882,-42.7463,0	1/1:91:1,90:1:36:90:3222:-286.603,-23.7955,0	0/1:61:25,36:25:887:36:1292:-98.2209,0,-61.7853	1/1:97:0,97:0:0:97:3462:-311.793,-29.1999,0	1/1:68:0,68:0:0:68:2422:-218.235,-20.47,0	1/1:40:0,40:0:0:40:1411:-127.283,-12.0412,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:50:0,50:0:0:50:1770:-159.581,-15.0515,0	0/1:155:79,76:79:2823:76:2736:-199.822,0,-207.649	1/1:133:0,133:0:0:133:4735:-426.31,-40.037,0	1/1:105:0,105:0:0:105:3735:-336.352,-31.6082,0	1/1:81:0,81:0:0:81:2899:-261.145,-24.3834,0	0/1:47:15,32:15:540:32:1148:-89.4799,0,-34.7881	1/1:100:0,100:0:0:100:3561:-320.697,-30.103,0	1/1:198:0,198:0:0:198:7073:-636.632,-59.6039,0	1/1:194:0,194:0:0:194:6956:-626.104,-58.3998,0	1/1:36:0,36:0:0:36:1283:-115.773,-10.8371,0	1/1:278:1,276:1:36:276:9857:-883.549,-80.0719,0	1/1:127:0,127:0:0:127:4540:-408.766,-38.2308,0	1/1:108:0,107:0:0:107:3819:-343.603,-32.2102,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:25:10,15:10:360:15:531:-40.5962,0,-25.2186	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:16:7,9:7:248:9:315:-23.8707,0,-17.8477	1/1:246:1,245:1:36:245:8753:-784.157,-70.4551,0	0/1:116:56,60:56:1996:60:2160:-159.747,0,-144.995	0/1:83:40,43:40:1432:43:1540:-113.908,0,-104.192	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:125:47,78:47:1676:78:2788:-213.532,0,-113.498	0/1:24:16,8:16:572:8:280:-18.3146,0,-44.5887	1/1:168:0,168:0:0:168:6002:-540.286,-50.573,0	1/1:65:0,65:0:0:65:2301:-207.338,-19.567,0	0/1:81:44,37:44:1576:37:1313:-94.0863,0,-117.748	0/1:114:50,64:50:1778:64:2252:-168.624,0,-125.984	1/1:72:0,72:0:0:72:2560:-230.649,-21.6742,0	1/1:111:1,110:1:36:110:3915:-348.899,-29.8161,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:100:50,50:50:1792:50:1792:-131.457,0,-131.459	0/1:93:45,48:45:1590:48:1717:-126.819,0,-115.393	0/1:7:2,5:2:72:5:171:-13.6182,0,-4.72951	0/1:133:76,57:76:2724:57:2052:-144.914,0,-205.366	1/1:75:0,75:0:0:75:2675:-240.995,-22.5773,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:104:0,104:0:0:104:3732:-336.08,-31.3071,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:28:13,15:13:464:15:536:-40.146,0,-33.6687	1/1:72:0,72:0:0:72:2564:-231.011,-21.6742,0	1/1:111:3,108:3:100:108:3848:-337.185,-24.0839,0	0/1:17:13,4:13:464:4:144:-8.19611,0,-36.98	1/1:120:1,119:1:32:119:4263:-380.648,-32.9243,0	0/1:111:54,57:54:1906:57:2044:-150.817,0,-138.402	0/1:51:27,24:27:960:24:860:-62.3693,0,-71.3637	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:106:1,105:1:36:105:3743:-333.473,-28.3109,0	0/1:113:80,33:80:2846:33:1180:-72.4917,0,-222.361	1/1:36:0,36:0:0:36:1287:-116.133,-10.8371,0	0/1:23:13,10:13:459:10:360:-25.8206,0,-34.7204	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:119:60,59:60:2131:59:2116:-154.886,0,-156.235	0/1:70:28,42:28:996:42:1512:-115.303,0,-68.8828	1/1:106:0,106:0:0:106:3762:-338.78,-31.9092,0	0/1:148:76,72:76:2728:72:2565:-186.546,0,-201.21	0/1:82:58,24:58:2071:24:858:-52.8568,0,-161.976	0/1:60:39,21:39:1387:21:756:-50.3054,0,-107.066	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:60:37,23:37:1315:23:824:-56.4215,0,-100.589	1/1:77:0,77:0:0:77:2736:-246.481,-23.1793,0	1/1:154:1,153:1:36:153:5450:-487.029,-42.7603,0	0/1:69:36,33:36:1280:33:1171:-84.9256,0,-94.7322	1/1:92:0,92:0:0:92:3281:-295.51,-27.6948,0	0/1:51:18,33:18:639:33:1168:-90.0726,0,-42.4857	0/1:138:60,78:60:2148:78:2796:-210.338,0,-152.045	0/1:23:14,9:14:500:9:320:-22.2187,0,-38.4125	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	1/1:85:0,85:0:0:85:3037:-273.56,-25.5876,0	0/1:49:27,22:27:960:22:780:-55.7726,0,-71.9658	0/1:121:56,65:56:1991:65:2336:-174.075,0,-143.039	0/1:110:75,35:75:2676:35:1248:-79.5116,0,-207.972	1/1:102:0,101:0:0:101:3616:-325.286,-30.404,0	1/1:123:0,123:0:0:123:4395:-395.717,-37.0267,0
chr01	34784195	.	T	C	77616.5	PASS	AB=0.420947;ABP=138.279;AC=140;AF=0.744681;AN=188;AO=3783;CIGAR=1X;DP=5245;DPB=5245;DPRA=21.1475;EPP=8217.69;EPPR=3171.19;GTI=1;LEN=1;MEANALT=1.03333;MQM=59.6616;MQMR=59.9088;NS=94;NUMALT=1;ODDS=0.161697;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133313;QR=52156;RO=1459;RPL=3783;RPP=8217.69;RPPR=3171.19;RPR=0;RUN=1;SAF=3783;SAP=8217.69;SAR=0;SRF=1459;SRP=3171.19;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:17,19:17:612:19:684:-51.0451,0,-44.5764	0/1:50:41,9:41:1457:9:320:-14.0909,0,-116.102	1/1:81:0,81:0:0:81:2839:-255.723,-24.3834,0	1/1:39:0,39:0:0:39:1378:-124.316,-11.7402,0	0/1:36:18,18:18:644:18:644:-47.4535,0,-47.4535	0/1:32:25,7:25:900:7:248:-13.0312,0,-71.1965	1/1:68:0,68:0:0:68:2403:-216.512,-20.47,0	1/1:72:0,71:0:0:71:2472:-222.299,-21.3731,0	0/1:77:39,38:39:1396:38:1338:-97.5122,0,-101.738	0/1:79:45,34:45:1620:34:1216:-85.9628,0,-122.308	1/1:48:0,48:0:0:48:1657:-149.412,-14.4494,0	1/1:98:0,98:0:0:98:3451:-310.594,-29.5009,0	1/1:70:0,70:0:0:70:2473:-222.822,-21.0721,0	0/1:71:45,26:45:1604:26:921:-61.8193,0,-123.269	1/1:49:0,49:0:0:49:1737:-156.612,-14.7505,0	1/1:54:0,54:0:0:54:1881:-169.564,-16.2556,0	1/1:39:0,39:0:0:39:1384:-124.848,-11.7402,0	1/1:22:0,22:0:0:22:768:-69.4299,-6.62266,0	1/1:21:0,21:0:0:21:735:-66.4632,-6.32163,0	0/1:116:78,38:78:2781:38:1340:-85.9753,0,-215.61	1/1:82:0,82:0:0:82:2848:-256.535,-24.6845,0	1/1:163:1,162:1:36:162:5749:-513.916,-45.4696,0	1/1:55:0,55:0:0:55:1951:-175.704,-16.5567,0	0/1:49:23,26:23:828:26:928:-69.0845,0,-60.0936	1/1:59:0,59:0:0:59:2086:-188.001,-17.7608,0	1/1:122:0,122:0:0:122:4275:-384.919,-36.7257,0	1/1:56:0,56:0:0:56:1943:-175.131,-16.8577,0	1/1:31:0,31:0:0:31:1081:-97.5775,-9.33193,0	1/1:77:0,77:0:0:77:2733:-246.208,-23.1793,0	1/1:66:0,66:0:0:66:2308:-207.955,-19.868,0	1/1:48:0,48:0:0:48:1683:-151.658,-14.4494,0	1/1:7:0,7:0:0:7:252:-23.0207,-2.10721,0	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:3:0,3:0:0:3:108:-10.0727,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:145:0,145:0:0:145:5154:-463.998,-43.6494,0	0/1:80:63,17:63:2253:17:604:-30.6082,0,-178.949	0/1:46:30,16:30:1068:16:576:-38.3276,0,-82.5847	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:85:52,33:52:1863:33:1176:-80.5091,0,-142.361	0/1:21:13,8:13:468:8:284:-19.5817,0,-36.138	1/1:55:0,55:0:0:55:1912:-172.335,-16.5567,0	1/1:29:0,29:0:0:29:988:-89.2259,-8.72987,0	0/1:55:26,29:26:936:29:1032:-76.6368,0,-68.0005	0/1:113:55,58:55:1976:58:2055:-151.204,0,-144.098	1/1:47:0,47:0:0:47:1660:-149.683,-14.1484,0	0/1:91:11,80:11:396:80:2852:-229.513,0,-8.58902	1/1:58:0,58:0:0:58:2014:-181.517,-17.4597,0	0/1:47:32,15:32:1152:15:532:-34.057,0,-89.8394	0/1:76:56,20:56:2004:20:683:-38.7437,0,-157.755	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:82:57,25:57:2030:25:892:-55.9125,0,-158.287	1/1:15:0,15:0:0:15:531:-48.121,-4.51545,0	1/1:20:0,20:0:0:20:705:-63.7435,-6.0206,0	1/1:36:0,36:0:0:36:1292:-116.577,-10.8371,0	1/1:17:0,17:0:0:17:594:-53.7832,-5.11751,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:19:13,6:13:468:6:212:-13.7052,0,-36.7401	1/1:39:0,39:0:0:39:1392:-125.562,-11.7402,0	1/1:84:1,83:1:36:83:2911:-258.623,-21.6882,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:71:0,71:0:0:71:2528:-227.657,-21.3731,0	0/1:119:65,54:65:2332:54:1880:-133.641,0,-174.317	0/1:48:26,22:26:927:22:740:-52.4149,0,-69.2979	1/1:13:1,12:1:36:12:423:-34.8044,-0.315115,0	1/1:110:0,110:0:0:110:3919:-352.888,-33.1133,0	0/1:103:74,29:74:2632:29:1044:-63.264,0,-206.12	1/1:25:0,25:0:0:25:875:-79.0661,-7.52575,0	0/1:54:27,27:27:959:27:940:-68.6366,0,-70.3698	1/1:23:0,23:0:0:23:803:-72.5884,-6.92369,0	0/1:14:10,4:10:351:4:144:-9.0992,0,-27.7123	0/1:100:41,59:41:1468:59:2098:-158.977,0,-102.313	0/1:48:32,16:32:1143:16:552:-35.5534,0,-88.7293	1/1:68:0,68:0:0:68:2388:-215.16,-20.47,0	0/1:100:61,39:61:2188:39:1396:-95.8277,0,-167.082	0/1:96:64,32:64:2269:32:1152:-75.0612,0,-175.572	0/1:43:35,8:35:1243:8:288:-13.3231,0,-99.2296	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:52:34,18:34:1216:18:636:-41.9145,0,-94.093	1/1:58:0,58:0:0:58:2067:-186.233,-17.4597,0	1/1:126:2,124:2:72:124:4367:-386.348,-31.0931,0	0/1:55:16,39:16:572:39:1351:-105.327,0,-35.2568	1/1:58:0,57:0:0:57:2031:-182.685,-17.1587,0	0/1:40:23,17:23:819:17:599:-42.1922,0,-61.9904	0/1:116:57,58:57:2039:58:2046:-149.56,0,-148.844	0/1:15:3,12:3:108:12:420:-33.6186,0,-5.55972	1/1:55:0,55:0:0:55:1941:-174.964,-16.5567,0	1/1:48:0,48:0:0:48:1658:-149.387,-14.4494,0	0/1:56:29,27:29:1031:27:941:-68.1216,0,-76.2449	0/1:102:66,36:66:2351:36:1277:-84.5236,0,-181.144	0/1:56:33,23:33:1188:23:820:-57.2648,0,-90.3709	1/1:29:0,29:0:0:29:985:-88.9502,-8.72987,0	1/1:73:1,72:1:36:72:2511:-222.596,-18.3769,0
chr01	34784247	.	A	G	28200.7	PASS	AB=0.580864;ABP=162.098;AC=42;AF=0.225806;AN=186;AO=1636;CIGAR=1X;DP=6520;DPB=6520;DPRA=1.12058;EPP=3555.54;EPPR=10599.8;GTI=0;LEN=1;MEANALT=1.04167;MQM=59.552;MQMR=51.9232;NS=93;NUMALT=1;ODDS=0.33573;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58001;QR=174108;RO=4880;RPL=0;RPP=3555.54;RPPR=10599.8;RPR=1636;RUN=1;SAF=0;SAP=3555.54;SAR=1636;SRF=0;SRP=10599.8;SRR=4880;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:13,28:13:460:28:991:-77.1613,0,-29.23	0/1:57:20,37:20:716:37:1311:-101.108,0,-47.333	0/0:193:193,0:193:6901:0:0:0,-58.0988,-616.426	0/0:163:163,0:163:5838:0:0:0,-49.0679,-524.293	0/1:38:14,24:14:495:24:847:-65.1096,0,-33.325	0/1:35:15,20:15:536:20:712:-53.8683,0,-37.2619	0/0:67:67,0:67:2387:0:0:0,-20.169,-214.418	0/0:112:112,0:112:4020:0:0:0,-33.7154,-358.232	0/1:57:8,49:8:288:49:1743:-139.923,0,-7.67166	0/1:54:18,36:18:644:36:1264:-97.7965,0,-41.7975	0/0:62:62,0:62:2203:0:0:0,-18.6639,-197.971	0/0:48:48,0:48:1719:0:0:0,-14.4494,-153.616	0/0:39:39,0:39:1404:0:0:0,-11.7402,-125.892	0/1:84:27,57:27:959:57:2007:-155.584,0,-60.7182	0/0:43:43,0:43:1544:0:0:0,-12.9443,-138.891	0/0:51:51,0:51:1827:0:0:0,-15.3525,-163.851	0/0:62:62,0:62:2223:0:0:0,-18.6639,-199.128	0/0:35:35,0:35:1230:0:0:0,-10.536,-110.356	0/0:18:18,0:18:628:0:0:0,-5.41854,-56.5366	0/1:164:79,85:79:2832:85:3013:-221.997,0,-204.911	0/0:80:80,0:80:2856:0:0:0,-24.0824,-253.93	0/0:107:107,0:107:3822:0:0:0,-32.2102,-343.085	0/0:45:45,0:45:1587:0:0:0,-13.5463,-142.782	0/1:35:12,23:12:432:23:824:-63.9427,0,-28.5809	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.008	0/0:139:138,1:138:4914:1:36:0,-38.2475,-437.572	0/0:81:81,0:81:2899:0:0:0,-24.3834,-259.821	0/0:21:21,0:21:756:0:0:0,-6.32163,-67.89	0/0:185:185,0:185:6618:0:0:0,-55.6905,-594.841	0/0:180:178,2:178:6339:2:72:0,-47.3487,-560.094	0/0:94:94,0:94:3314:0:0:0,-28.2968,-296.836	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.68253	0/1:7:3,4:3:99:4:140:-10.8374,0,-7.11141	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.9401	0/1:11:5,6:5:161:6:212:-16.1135,0,-11.4468	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.309	0/1:130:58,72:58:2067:72:2517:-187.614,0,-144.24	0/1:37:14,23:14:487:23:819:-62.8815,0,-31.9399	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	0/1:157:72,84:72:2588:84:2968:-220.146,0,-184.904	0/1:48:17,31:17:599:31:1103:-85.1258,0,-39.5019	0/0:114:113,1:113:4028:1:36:0,-30.7191,-357.732	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.069	0/1:37:19,18:19:684:18:648:-47.5092,0,-50.1065	0/1:83:33,50:33:1175:50:1773:-134.859,0,-80.8814	0/0:64:64,0:64:2283:0:0:0,-19.2659,-204.129	0/0:115:115,0:115:4091:0:0:0,-34.6184,-367.03	0/0:75:75,0:75:2687:0:0:0,-22.5772,-240.921	0/1:137:65,72:65:2325:72:2566:-189.927,0,-167.63	0/1:76:36,40:36:1296:40:1424:-105.575,0,-93.8078	0/1:9:2,7:2:72:7:243:-19.4982,0,-4.11776	0/1:132:63,69:63:2256:69:2451:-181.092,0,-160.76	0/0:86:86,0:86:3088:0:0:0,-25.8886,-277.583	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.79866	0/0:117:117,0:117:4183:0:0:0,-35.2205,-374.454	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.806	0/1:8:5,3:5:180:3:99:-6.82834,0,-14.1296	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.3226	0/0:69:69,0:69:2436:0:0:0,-20.7711,-217.165	0/0:81:81,0:81:2861:0:0:0,-24.3834,-256.537	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.85308	0/0:107:107,0:107:3831:0:0:0,-32.2102,-344.177	0/1:142:67,75:67:2378:75:2666:-197.426,0,-170.875	0/1:66:29,37:29:1036:37:1328:-99.8992,0,-72.4031	0/0:91:90,1:90:3211:1:36:0,-23.7955,-284.009	0/0:148:145,3:145:5146:3:104:0,-34.8544,-450.212	0/1:131:53,78:53:1896:78:2776:-210.632,0,-131.035	0/0:45:45,0:45:1616:0:0:0,-13.5463,-144.904	0/1:47:28,19:28:1004:19:661:-45.6494,0,-74.8538	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.806	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.7872	0/1:68:30,38:30:1080:38:1352:-101.496,0,-76.1174	0/1:52:21,31:21:752:31:1082:-82.017,0,-51.8486	0/0:77:76,1:76:2692:1:36:0,-19.5901,-236.514	0/1:114:58,56:58:2080:56:1978:-143.957,0,-152.649	0/1:101:57,44:57:2027:44:1584:-112.211,0,-150.53	0/1:68:33,35:33:1180:35:1236:-90.214,0,-85.586	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.1779	0/1:66:29,37:29:1040:37:1316:-98.7161,0,-73.8143	0/0:139:138,0:138:4901:0:0:0,-41.5421,-437.63	0/0:61:61,0:61:2187:0:0:0,-18.3628,-196.072	0/1:44:19,25:19:680:25:874:-65.7253,0,-48.1335	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.154	0/1:48:18,30:18:648:30:1062:-81.4414,0,-44.1141	0/1:86:24,62:24:860:62:2193:-170.876,0,-51.6601	0/1:24:8,16:8:276:16:548:-42.3715,0,-17.8519	0/0:36:36,0:36:1279:0:0:0,-10.8371,-114.501	0/0:50:49,0:49:1711:0:0:0,-14.7505,-153.4	0/1:73:37,36:37:1312:36:1287:-94.1494,0,-95.8209	0/1:133:39,93:39:1396:93:3320:-258.943,0,-85.4491	0/1:80:13,67:13:464:67:2383:-190.564,0,-17.9134	0/0:112:112,0:112:4007:0:0:0,-33.7154,-359.472	0/0:52:52,0:52:1855:0:0:0,-15.6536,-166.755
chr01	34784250	.	T	C	98377.6	PASS	AB=0.415945;ABP=173.122;AC=144;AF=0.774194;AN=186;AO=4782;CIGAR=1X;DP=6415;DPB=6415;DPRA=0;EPP=10387;EPPR=3518.67;GTI=1;LEN=1;MEANALT=1.02151;MQM=51.955;MQMR=59.5573;NS=93;NUMALT=1;ODDS=0.350409;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168458;QR=57946;RO=1631;RPL=0;RPP=10387;RPPR=3518.67;RPR=4782;RUN=1;SAF=0;SAP=10387;SAR=4782;SRF=0;SRP=3544.68;SRR=1631;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:27,13:27:959:13:468:-30.2388,0,-74.5842	0/1:54:35,19:35:1256:19:662:-43.4172,0,-97.0759	1/1:194:0,193:0:0:193:6873:-613.642,-58.0988,0	1/1:158:0,158:0:0:158:5535:-497.253,-47.5627,0	0/1:38:24,14:24:851:14:482:-32.1698,0,-65.4703	0/1:32:17,15:17:608:15:531:-37.8003,0,-45.4191	1/1:67:0,67:0:0:67:2363:-212.484,-20.169,0	1/1:110:0,110:0:0:110:3889:-345.736,-33.1133,0	0/1:56:48,8:48:1720:8:284:-7.61693,0,-138.155	0/1:56:37,19:37:1324:19:671:-43.6201,0,-102.588	1/1:62:0,62:0:0:62:2151:-193.412,-18.6639,0	1/1:50:0,50:0:0:50:1733:-155.115,-15.0515,0	1/1:40:0,40:0:0:40:1411:-126.564,-12.0412,0	0/1:85:59,26:59:2083:26:909:-55.9338,0,-162.138	1/1:43:0,43:0:0:43:1506:-135.529,-12.9443,0	1/1:51:0,51:0:0:51:1763:-158.403,-15.3525,0	1/1:61:1,60:1:36:60:2098:-184.375,-14.7646,0	1/1:35:0,35:0:0:35:1235:-110.803,-10.5361,0	1/1:18:0,18:0:0:18:640:-57.4831,-5.41854,0	0/1:163:85,78:85:3025:78:2784:-200.97,0,-223.366	1/1:80:0,80:0:0:80:2794:-248.462,-24.0824,0	1/1:104:0,104:0:0:104:3650:-327.485,-31.3071,0	1/1:44:0,44:0:0:44:1545:-139.059,-13.2453,0	0/1:34:23,11:23:824:11:396:-25.6516,0,-64.2437	1/1:35:0,35:0:0:35:1226:-109.686,-10.5361,0	1/1:132:1,131:1:36:131:4650:-414.375,-36.1403,0	1/1:81:0,81:0:0:81:2889:-258.932,-24.3834,0	1/1:22:0,22:0:0:22:767:-68.8958,-6.62266,0	1/1:184:0,184:0:0:184:6502:-584.308,-55.3895,0	1/1:169:2,167:2:72:167:5851:-517.573,-44.0373,0	1/1:91:0,91:0:0:91:3180:-284.81,-27.3937,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:7:4,3:4:144:3:104:-7.57532,0,-11.2064	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:288:-25.9401,-2.40824,0	0/1:10:6,4:6:212:4:140:-9.88635,0,-16.4145	1/1:51:0,51:0:0:51:1799:-161.883,-15.3525,0	0/1:125:71,54:71:2498:54:1898:-130.74,0,-187.42	0/1:36:23,13:23:815:13:460:-29.8107,0,-62.7473	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:162:88,74:88:3099:74:2586:-182.89,0,-230.365	0/1:49:31,18:31:1108:18:644:-43.0881,0,-85.2759	1/1:110:2,108:2:72:108:3750:-329.685,-26.2766,0	1/1:26:0,26:0:0:26:900:-81.2044,-7.82678,0	0/1:37:17,20:17:581:20:703:-52.0545,0,-41.4703	0/1:83:50,33:50:1758:33:1152:-78.8152,0,-133.51	1/1:63:0,63:0:0:63:2213:-198.342,-18.9649,0	1/1:114:0,114:0:0:114:4010:-360.238,-34.3174,0	1/1:75:0,75:0:0:75:2645:-237.109,-22.5773,0	0/1:135:72,62:72:2562:62:2212:-158.286,0,-190.126	0/1:76:42,34:42:1500:34:1212:-86.4303,0,-112.412	0/1:9:7,2:7:237:2:72:-4.11776,0,-18.9498	0/1:132:69,63:69:2468:63:2256:-161.079,0,-182.608	1/1:81:0,81:0:0:81:2864:-257.657,-24.3834,0	1/1:1:0,1:0:0:1:36:-3.58305,-0.30103,0	1/1:114:0,114:0:0:114:3985:-357.227,-34.3174,0	1/1:12:0,12:0:0:12:417:-37.8091,-3.61236,0	0/1:8:3,5:3:108:5:180:-14.1296,0,-7.66693	0/1:5:3,2:3:108:2:68:-4.94506,0,-8.57002	1/1:65:0,65:0:0:65:2312:-206.907,-19.567,0	1/1:76:2,74:2:72:74:2591:-225.702,-16.0416,0	0/1:4:1,3:1:36:3:108:-8.85308,0,-2.39415	1/1:104:0,104:0:0:104:3697:-332.379,-31.3071,0	0/1:138:73,65:73:2574:65:2270:-162.508,0,-190.357	0/1:67:38,29:38:1360:29:1028:-71.3643,0,-102.408	1/1:85:1,84:1:36:84:2970:-263.098,-21.9893,0	1/1:148:3,145:3:108:145:5134:-448.475,-34.482,0	0/1:128:78,50:78:2749:50:1755:-119.362,0,-209.114	1/1:43:0,43:0:0:43:1506:-135.066,-12.9443,0	0/1:47:17,30:17:599:30:1067:-80.6261,0,-40.0759	1/1:36:0,36:0:0:36:1261:-113.708,-10.8371,0	0/1:12:6,6:6:216:6:216:-16.1501,0,-16.1782	0/1:67:37,30:37:1324:30:1059:-74.6609,0,-99.2734	0/1:51:30,21:30:1053:21:747:-51.7015,0,-79.724	1/1:76:1,75:1:36:75:2630:-230.988,-19.2891,0	0/1:107:54,53:54:1936:53:1892:-138.099,0,-142.29	0/1:102:45,57:45:1612:57:2020:-149.988,0,-114.429	0/1:67:34,33:34:1207:33:1176:-85.535,0,-87.895	1/1:17:0,17:0:0:17:603:-54.2239,-5.11751,0	0/1:66:37,29:37:1315:29:1023:-72.2985,0,-98.6254	1/1:138:0,138:0:0:138:4881:-436.57,-41.5421,0	1/1:61:0,61:0:0:61:2160:-194.089,-18.3628,0	0/1:44:25,19:25:891:19:667:-47.0222,0,-67.2588	1/1:60:0,60:0:0:60:2115:-190.066,-18.0618,0	0/1:48:30,18:30:1055:18:644:-43.7556,0,-80.8106	0/1:85:62,23:62:2208:23:816:-48.0488,0,-172.829	0/1:24:17,7:17:604:7:239:-14.4981,0,-47.4208	1/1:35:0,35:0:0:35:1217:-109.249,-10.5361,0	1/1:48:0,48:0:0:48:1675:-150.319,-14.4494,0	0/1:73:36,37:36:1271:37:1307:-95.3689,0,-92.7136	0/1:132:92,40:92:3300:40:1377:-84.0506,0,-257.422	0/1:78:65,13:65:2320:13:460:-18.0983,0,-185.499	1/1:109:0,109:0:0:109:3834:-344.5,-32.8123,0	1/1:52:0,52:0:0:52:1825:-164.188,-15.6536,0
chr01	34784307	.	T	C	103419	PASS	AB=0.427489;ABP=129.604;AC=144;AF=0.774194;AN=186;AO=4896;CIGAR=1X;DP=6493;DPB=6493;DPRA=0;EPP=10634.5;EPPR=3468.68;GTI=0;LEN=1;MEANALT=1.01075;MQM=51.8846;MQMR=59.5545;NS=93;NUMALT=1;ODDS=1.38845;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175025;QR=56377;RO=1596;RPL=4896;RPP=10634.5;RPPR=3468.68;RPR=0;RUN=1;SAF=0;SAP=10634.5;SAR=4896;SRF=0;SRP=3468.68;SRR=1596;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:28,12:28:989:12:428:-26.6599,0,-77.2808	0/1:56:35,21:35:1202:21:756:-51.2116,0,-91.6071	1/1:196:0,196:0:0:196:7015:-625.978,-59.0019,0	1/1:162:0,162:0:0:162:5757:-517.174,-48.7669,0	0/1:37:23,14:23:828:14:500:-34.0769,0,-63.706	0/1:33:18,15:18:644:15:540:-38.1383,0,-48.3543	1/1:68:0,68:0:0:68:2424:-217.901,-20.47,0	1/1:113:0,113:0:0:113:4056:-359.97,-34.0164,0	0/1:57:48,9:48:1708:9:320:-10.5432,0,-136.764	0/1:54:34,20:34:1224:20:716:-48.2655,0,-94.1182	1/1:63:0,63:0:0:63:2247:-201.17,-18.9649,0	1/1:47:0,47:0:0:47:1686:-150.878,-14.1484,0	1/1:40:0,40:0:0:40:1440:-129.117,-12.0412,0	0/1:85:58,27:58:2064:27:969:-61.3104,0,-160.422	1/1:43:0,43:0:0:43:1544:-138.891,-12.9443,0	1/1:52:0,52:0:0:52:1845:-165.39,-15.6536,0	1/1:64:1,63:1:36:63:2249:-197.85,-15.6676,0	1/1:35:0,35:0:0:35:1260:-113.01,-10.5361,0	1/1:18:0,18:0:0:18:648:-58.1892,-5.41854,0	0/1:162:82,80:82:2879:80:2845:-206.659,0,-210.555	1/1:82:0,81:0:0:81:2896:-257.003,-24.3834,0	1/1:108:0,108:0:0:108:3857:-346.456,-32.5112,0	1/1:45:0,45:0:0:45:1616:-145.235,-13.5464,0	0/1:35:23,12:23:813:12:432:-28.5809,0,-62.9484	1/1:34:0,34:0:0:34:1197:-107.773,-10.235,0	1/1:139:0,139:0:0:139:4969:-446.273,-41.8432,0	1/1:82:0,82:0:0:82:2940:-263.318,-24.6845,0	1/1:22:0,22:0:0:22:792:-71.1204,-6.62266,0	1/1:185:0,185:0:0:185:6636:-596.316,-55.6906,0	1/1:176:2,174:2:68:174:6210:-549.065,-46.5236,0	1/1:93:0,93:0:0:93:3336:-298.539,-27.9958,0	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	0/1:7:4,3:4:144:3:104:-7.57532,0,-11.2064	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:288:-25.9401,-2.40824,0	0/1:11:6,5:6:186:5:180:-13.1619,0,-13.7322	1/1:53:0,53:0:0:53:1885:-169.601,-15.9546,0	0/1:120:63,57:63:2210:57:2025:-143.375,0,-163.005	0/1:35:21,14:21:695:14:500:-33.6911,0,-52.2339	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:159:83,76:83:2892:76:2724:-195.453,0,-212.645	0/1:49:31,18:31:1104:18:640:-42.8141,0,-84.9156	1/1:114:1,113:1:36:113:4033:-357.89,-30.7191,0	1/1:24:0,24:0:0:24:864:-77.9718,-7.22472,0	0/1:37:18,19:18:621:19:676:-49.6299,0,-45.0685	0/1:80:48,32:48:1720:32:1122:-76.8907,0,-130.996	1/1:66:0,66:0:0:66:2356:-209.373,-19.868,0	1/1:116:0,116:0:0:116:4139:-371.379,-34.9195,0	1/1:76:0,76:0:0:76:2705:-242.437,-22.8783,0	0/1:134:68,66:68:2402:66:2376:-173.114,0,-176.083	0/1:76:41,35:41:1453:35:1252:-89.9804,0,-108.181	0/1:8:6,2:6:212:2:72:-4.41879,0,-17.0166	0/1:133:70,63:70:2508:63:2241:-159.121,0,-185.891	1/1:86:0,86:0:0:86:3064:-275.257,-25.8886,0	1/1:2:0,2:0:0:2:72:-6.79866,-0.60206,0	1/1:116:1,115:1:36:115:4101:-363.997,-31.3212,0	1/1:12:0,12:0:0:12:432:-39.1656,-3.61236,0	0/1:8:3,5:3:108:5:180:-14.1296,0,-7.66693	0/1:4:2,2:2:72:2:72:-5.62363,0,-5.6326	1/1:67:0,67:0:0:67:2370:-211.942,-20.169,0	1/1:78:0,78:0:0:78:2777:-249.225,-23.4803,0	0/1:4:1,3:1:36:3:108:-8.85308,0,-2.39415	1/1:107:0,107:0:0:107:3840:-344.985,-32.2102,0	0/1:142:75,67:75:2688:67:2389:-171.805,0,-199.409	0/1:65:37,28:37:1305:28:1008:-70.7967,0,-98.0628	1/1:90:0,90:0:0:90:3220:-288.638,-27.0927,0	1/1:150:4,146:4:144:146:5195:-449.939,-31.8456,0	0/1:131:76,55:76:2679:55:1950:-135.845,0,-201.901	1/1:47:0,47:0:0:47:1684:-151.004,-14.1484,0	0/1:50:20,30:20:716:30:1076:-80.4006,0,-49.7024	1/1:35:0,35:0:0:35:1260:-113.615,-10.5361,0	0/1:12:6,6:6:201:6:216:-16.1501,0,-14.8047	0/1:70:40,30:40:1379:30:1072:-74.9535,0,-103.309	0/1:49:28,21:28:989:21:755:-53.0515,0,-74.5574	1/1:76:0,76:0:0:76:2728:-243.459,-22.8783,0	0/1:112:54,58:54:1928:58:2084:-153.589,0,-140.065	0/1:102:45,57:45:1588:57:2040:-151.623,0,-112.183	0/1:67:34,33:34:1182:33:1184:-86.2391,0,-85.6403	1/1:18:0,18:0:0:18:644:-57.8663,-5.41854,0	0/1:66:37,29:37:1313:29:1040:-73.8143,0,-98.444	1/1:137:0,137:0:0:137:4902:-438.287,-41.2411,0	1/1:62:0,62:0:0:62:2221:-199.202,-18.6639,0	0/1:44:25,19:25:900:19:684:-48.4919,0,-68.0711	1/1:60:0,60:0:0:60:2160:-194.083,-18.0618,0	0/1:48:30,18:30:1031:18:644:-43.7566,0,-78.6429	0/1:84:61,23:61:2172:23:828:-49.3862,0,-170.449	0/1:23:16,7:16:572:7:252:-15.9649,0,-44.8446	1/1:37:0,37:0:0:37:1309:-117.182,-11.1381,0	1/1:48:0,48:0:0:48:1712:-153.749,-14.4494,0	0/1:70:33,37:33:1172:37:1332:-98.4936,0,-84.7072	0/1:133:90,43:90:3190:43:1544:-98.5948,0,-247.233	0/1:80:66,14:66:2338:14:500:-21.0492,0,-186.513	1/1:111:0,111:0:0:111:3988:-357.746,-33.4143,0	1/1:53:0,53:0:0:53:1900:-170.795,-15.9546,0
chr01	34812960	.	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chr01	34838244	.	G	C	83042.6	PASS	AB=0.460724;ABP=33.3726;AC=141;AF=0.758065;AN=186;AO=3951;CIGAR=1X;DP=5191;DPB=5191;DPRA=4.01941;EPP=8582.5;EPPR=2680.44;GTI=1;LEN=1;MEANALT=1.03261;MQM=60;MQMR=59.9919;NS=93;NUMALT=1;ODDS=0.0798571;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140119;QR=44088;RO=1237;RPL=3951;RPP=8582.5;RPPR=2689.12;RPR=0;RUN=1;SAF=3951;SAP=8582.5;SAR=0;SRF=1236;SRP=2680.44;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:65:42,23:42:1504:23:824:-54.9164,0,-116.088	1/1:41:0,41:0:0:41:1457:-131.424,-12.3422,0	1/1:69:0,69:0:0:69:2406:-216.794,-20.7711,0	0/1:42:27,15:27:944:15:532:-35.5698,0,-72.6281	0/1:24:10,14:10:347:14:504:-38.4734,0,-24.3389	1/1:31:1,30:1:36:30:1068:-92.8338,-5.73366,0	1/1:60:0,60:0:0:60:2085:-187.917,-18.0618,0	0/1:71:38,33:38:1364:33:1179:-85.0441,0,-101.688	0/1:55:26,29:26:924:29:1017:-75.2829,0,-66.921	1/1:37:0,36:0:0:36:1283:-115.413,-10.8371,0	1/1:72:0,71:0:0:71:2535:-228.041,-21.3731,0	1/1:62:0,62:0:0:62:2192:-197.545,-18.6639,0	0/1:69:31,38:31:1081:38:1355:-101.479,0,-76.8255	1/1:56:0,56:0:0:56:1988:-179.193,-16.8577,0	1/1:49:0,49:0:0:49:1739:-156.794,-14.7505,0	1/1:56:0,56:0:0:56:1983:-178.744,-16.8577,0	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	0/1:87:40,47:40:1409:47:1665:-123.946,0,-100.916	1/1:95:0,95:0:0:95:3349:-301.626,-28.5979,0	1/1:50:0,50:0:0:50:1777:-160.211,-15.0515,0	1/1:51:0,51:0:0:51:1805:-162.73,-15.3525,0	0/1:67:39,28:39:1388:28:1008:-70.8673,0,-105.05	1/1:44:0,44:0:0:44:1558:-140.51,-13.2453,0	1/1:236:0,236:0:0:236:8429:-758.611,-71.0431,0	0/1:125:59,66:59:2124:66:2352:-174.311,0,-153.799	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:81:0,81:0:0:81:2884:-259.797,-24.3834,0	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	1/1:49:0,49:0:0:49:1737:-156.612,-14.7505,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:192:0,192:0:0:192:6871:-618.458,-57.7978,0	0/1:108:49,59:49:1730:59:2077:-154.688,0,-123.472	0/1:33:16,17:16:576:17:599:-44.3041,0,-42.241	.:.:.:.:.:.:.:.	0/1:56:35,21:35:1245:21:741:-50.1539,0,-95.495	0/1:33:12,21:12:423:21:752:-58.0723,0,-28.4711	1/1:87:0,87:0:0:87:3082:-277.606,-26.1896,0	1/1:65:0,65:0:0:65:2299:-207.172,-19.567,0	0/1:43:19,24:19:684:24:835:-62.5222,0,-48.9323	0/1:53:27,26:27:968:26:921:-67.2506,0,-71.4828	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	1/1:42:0,42:0:0:42:1500:-135.294,-12.6433,0	1/1:80:0,80:0:0:80:2792:-251.52,-24.0824,0	0/1:49:26,23:26:936:23:828:-60.0936,0,-69.809	0/1:93:60,33:60:2152:33:1169:-77.5195,0,-165.951	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:65:31,34:31:1112:34:1220:-90.5399,0,-80.8244	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:16:0,16:0:0:16:559:-50.6376,-4.81648,0	1/1:40:0,40:0:0:40:1396:-125.934,-12.0412,0	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:46:0,46:0:0:46:1643:-148.158,-13.8474,0	1/1:89:1,88:1:36:88:3113:-276.799,-23.1934,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:91:0,91:0:0:91:3209:-289.032,-27.3937,0	0/1:97:67,30:67:2396:30:1068:-67.2322,0,-186.697	0/1:49:25,24:25:891:24:843:-61.4375,0,-65.7583	1/1:27:0,27:0:0:27:955:-86.2648,-8.12781,0	1/1:103:0,103:0:0:103:3623:-326.276,-31.0061,0	0/1:81:64,17:64:2269:17:612:-31.03,0,-180.088	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	0/1:52:22,30:22:766:30:1063:-80.3273,0,-53.6049	1/1:79:0,79:0:0:79:2792:-251.52,-23.7814,0	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:62:26,36:26:919:36:1280:-96.8394,0,-64.3623	0/1:36:10,25:10:356:25:892:-69.7039,0,-21.4857	1/1:110:0,110:0:0:110:3901:-351.285,-33.1133,0	0/1:78:46,32:46:1652:32:1129:-78.4369,0,-125.488	0/1:42:25,17:25:887:17:584:-40.2375,0,-67.5049	0/1:46:25,21:25:896:21:752:-54.1589,0,-67.113	1/1:22:0,22:0:0:22:787:-71.1547,-6.62266,0	0/1:51:39,12:39:1392:12:428:-23.5063,0,-110.226	1/1:40:0,40:0:0:40:1382:-124.671,-12.0412,0	1/1:58:0,58:0:0:58:2064:-186.029,-17.4597,0	0/1:81:37,44:37:1324:44:1576:-117.748,0,-95.0787	1/1:55:0,55:0:0:55:1935:-174.424,-16.5567,0	0/1:71:37,34:37:1315:34:1220:-88.7337,0,-97.2779	0/1:110:53,57:53:1895:57:1984:-145.717,0,-137.714	0/1:47:27,20:27:968:20:716:-50.6193,0,-73.289	1/1:74:0,74:0:0:74:2626:-236.588,-22.2762,0	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0	0/1:34:18,16:18:640:16:564:-40.8553,0,-47.6943	0/1:79:44,35:44:1571:35:1241:-88.2127,0,-117.899	0/1:48:33,15:33:1180:15:536:-34.1254,0,-92.0586	1/1:33:0,33:0:0:33:1171:-105.697,-9.93399,0	1/1:77:0,77:0:0:77:2735:-246.392,-23.1793,0
chr01	34838331	.	G	A	93328.3	PASS	AB=0.469012;ABP=22.9282;AC=143;AF=0.760638;AN=188;AO=4399;CIGAR=1X;DP=5671;DPB=5671;DPRA=0;EPP=9555.32;EPPR=2758.61;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9886;MQMR=59.9771;NS=94;NUMALT=1;ODDS=6.33622;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156321;QR=44849;RO=1269;RPL=1;RPP=9546.63;RPPR=2758.61;RPR=4398;RUN=1;SAF=1;SAP=9546.63;SAR=4398;SRF=0;SRP=2758.61;SRR=1269;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:16,16:16:544:16:576:-42.542,0,-39.6468	0/1:20:6,14:6:212:14:504:-39.6775,0,-13.4042	1/1:85:1,84:1:36:84:2994:-266.093,-21.9893,0	1/1:173:0,173:0:0:173:6170:-555.397,-52.0782,0	0/1:46:17,29:17:603:29:1040:-80.067,0,-40.7521	0/1:32:14,18:14:491:18:648:-49.0189,0,-34.8882	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:89:0,89:0:0:89:3162:-284.804,-26.7917,0	0/1:69:42,27:42:1495:27:959:-65.8543,0,-114.073	0/1:52:30,22:30:1071:22:788:-55.5912,0,-81.0481	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:79:0,79:0:0:79:2765:-249.088,-23.7814,0	1/1:91:0,91:0:0:91:3240:-291.822,-27.3937,0	0/1:44:16,28:16:561:28:987:-75.8977,0,-37.5718	1/1:51:0,51:0:0:51:1806:-162.821,-15.3525,0	1/1:38:0,38:0:0:38:1355:-122.25,-11.4391,0	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	1/1:22:0,22:0:0:22:755:-68.264,-6.62266,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:119:52,67:52:1859:67:2355:-176.383,0,-131.766	1/1:69:0,69:0:0:69:2425:-218.503,-20.7711,0	1/1:99:0,99:0:0:99:3480:-313.411,-29.802,0	1/1:84:0,84:0:0:84:3007:-270.861,-25.2865,0	0/1:35:17,18:17:600:18:640:-47.3933,0,-43.7931	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	1/1:121:0,121:0:0:121:4293:-386.531,-36.4246,0	0/1:119:71,48:71:2544:48:1684:-116.021,0,-193.388	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:139:0,139:0:0:139:4940:-444.75,-41.8432,0	1/1:83:0,82:0:0:82:2882:-259.253,-24.6845,0	1/1:81:0,81:0:0:81:2886:-259.976,-24.3834,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/1:14:9,5:9:324:5:174:-11.7872,0,-25.2914	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:21:17,4:17:599:4:144:-6.99199,0,-47.9165	1/1:186:0,186:0:0:186:6646:-598.216,-55.9916,0	0/1:99:51,48:51:1763:48:1720:-125.284,0,-129.145	0/1:38:17,21:17:586:21:751:-56.477,0,-41.6236	0/1:8:7,1:7:237:1:36:-1.19004,0,-19.2508	0/1:73:51,22:51:1819:22:773:-47.9143,0,-142.015	0/1:37:15,22:15:532:22:773:-58.7514,0,-37.075	1/1:98:0,98:0:0:98:3479:-313.321,-29.5009,0	1/1:35:0,35:0:0:35:1242:-112.083,-10.5361,0	0/1:51:20,31:20:692:31:1112:-85.0388,0,-47.2461	0/1:72:44,27:44:1576:27:960:-65.0798,0,-120.496	1/1:51:0,51:0:0:51:1812:-163.36,-15.3525,0	1/1:99:0,99:0:0:99:3514:-316.469,-29.802,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	0/1:79:31,48:31:1103:48:1716:-130.944,0,-75.7984	0/1:73:47,26:47:1661:26:923:-61.4107,0,-127.8	0/1:5:3,2:3:108:2:63:-4.478,0,-8.57002	0/1:66:35,31:35:1237:31:1103:-79.7118,0,-91.7643	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	1/1:9:0,9:0:0:9:300:-27.3221,-2.70927,0	1/1:79:0,79:0:0:79:2817:-253.768,-23.7814,0	1/1:22:1,21:1:36:21:734:-62.7821,-3.02439,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:91:0,91:0:0:91:3211:-289.213,-27.3937,0	0/1:7:6,1:6:216:1:32:-1.0921,0,-17.6833	1/1:178:0,178:0:0:178:6356:-572.129,-53.5833,0	0/1:104:51,53:51:1821:53:1908:-140.69,0,-132.862	0/1:21:11,10:11:396:10:352:-25.6966,0,-29.6611	1/1:65:0,65:0:0:65:2302:-207.438,-19.567,0	1/1:54:1,53:1:36:53:1892:-166.96,-12.6573,0	0/1:73:45,28:45:1616:28:977:-66.2651,0,-123.755	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	0/1:40:26,13:26:932:13:468:-30.5081,0,-72.2528	1/1:37:0,37:0:0:37:1317:-118.83,-11.1381,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:131:70,61:70:2470:61:2129:-152.439,0,-183.117	0/1:47:32,15:32:1127:15:536:-34.4264,0,-87.589	1/1:79:0,79:0:0:79:2810:-253.139,-23.7814,0	0/1:136:68,68:68:2431:68:2436:-178.554,0,-178.075	0/1:83:39,44:39:1382:44:1566:-116.245,0,-99.6918	0/1:60:30,30:30:1067:30:1072:-78.7307,0,-78.2794	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:71:45,26:45:1593:26:928:-62.4651,0,-122.285	1/1:95:0,95:0:0:95:3384:-304.775,-28.5979,0	1/1:93:0,93:0:0:93:3331:-300.006,-27.9958,0	0/1:49:23,26:23:792:26:928:-69.0878,0,-56.8437	1/1:66:0,66:0:0:66:2350:-211.758,-19.868,0	0/1:30:11,19:11:392:19:680:-52.4983,0,-26.5892	0/1:95:43,52:43:1508:52:1852:-138.362,0,-107.413	0/1:18:8,10:8:264:10:351:-26.5081,0,-18.6645	1/1:60:0,60:0:0:60:2149:-193.677,-18.0618,0	1/1:58:0,58:0:0:58:2067:-186.3,-17.4597,0	0/1:44:25,19:25:876:19:680:-48.2838,0,-65.9117	0/1:106:55,51:55:1886:51:1784:-128.929,0,-138.103	0/1:47:34,13:34:1183:13:448:-26.4994,0,-92.6227	1/1:80:0,80:0:0:80:2851:-256.828,-24.0824,0	1/1:80:0,80:0:0:80:2838:-255.656,-24.0824,0
chr01	34838358	.	C	G	22025.3	PASS	AB=0.529777;ABP=21.6322;AC=45;AF=0.239362;AN=188;AO=1284;CIGAR=1X;DP=5709;DPB=5709;DPRA=0.790748;EPP=2739.31;EPPR=9477.59;GTI=0;LEN=1;MEANALT=1.02083;MQM=59.979;MQMR=59.9808;NS=94;NUMALT=1;ODDS=6.17496;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45794;QR=158131;RO=4423;RPL=1278;RPP=2739.31;RPPR=9477.59;RPR=6;RUN=1;SAF=0;SAP=2791.18;SAR=1284;SRF=0;SRP=9607.43;SRR=4423;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:17,16:17:604:16:572:-41.8794,0,-44.7565	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/0:87:86,1:86:3084:1:36:0,-22.5913,-274.189	0/0:176:176,0:176:6242:0:0:0,-52.9813,-561.874	0/1:45:28,17:28:1004:17:612:-41.8671,0,-77.1295	0/1:32:18,14:18:633:14:504:-36.0651,0,-47.6621	0/0:58:58,0:58:2050:0:0:0,-17.4597,-184.768	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:71:27,44:27:964:44:1575:-120.668,0,-65.7037	0/1:51:21,30:21:756:30:1072:-81.4399,0,-53.0147	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/1:44:28,16:28:1004:16:576:-38.9297,0,-77.4305	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:123:70,53:70:2493:53:1892:-133.532,0,-187.595	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.552	0/0:100:100,0:100:3554:0:0:0,-30.103,-320.067	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	0/0:30:30,0:30:1050:0:0:0,-9.0309,-94.8063	0/0:117:117,0:117:4174:0:0:0,-35.2205,-375.57	0/1:119:48,71:48:1712:71:2513:-190.596,0,-118.543	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:136:136,0:136:4872:0:0:0,-40.9401,-438.632	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:20:4,16:4:144:16:568:-45.4313,0,-7.29302	0/0:189:189,0:189:6773:0:0:0,-56.8947,-609.64	0/1:98:48,50:48:1728:50:1773:-130.35,0,-126.304	0/1:41:24,17:24:860:17:612:-43.0712,0,-65.3796	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:73:22,51:22:788:51:1818:-141.926,0,-49.2696	0/1:37:22,15:22:788:15:540:-37.7984,0,-60.1067	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.18	0/1:52:33,19:33:1170:19:671:-45.0622,0,-89.9523	0/1:73:29,44:29:1036:44:1562:-118.895,0,-71.5754	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:102:102,0:102:3630:0:0:0,-30.7051,-326.903	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/1:81:50,31:50:1766:31:1116:-76.3683,0,-134.836	0/1:75:27,48:27:968:48:1716:-132.148,0,-64.8592	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:67:32,35:32:1152:35:1256:-93.1763,0,-83.8211	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:22:21,1:21:741:1:36:0,-3.02438,-63.4133	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:179:179,0:179:6428:0:0:0,-53.8844,-578.604	0/1:105:52,52:52:1856:52:1846:-134.751,0,-135.653	0/1:21:10,11:10:360:11:392:-29.2984,0,-26.4227	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:54:53,1:53:1889:1:36:0,-12.6573,-166.688	0/1:73:27,46:27:949:46:1656:-127.353,0,-63.7476	0/0:25:24,0:24:860:0:0:0,-7.22472,-77.4771	0/1:42:14,28:14:504:28:994:-77.1311,0,-33.0548	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:132:61,71:61:2162:71:2519:-187.225,0,-155.108	0/1:47:15,32:15:536:32:1148:-89.4814,0,-34.4264	0/0:79:79,0:79:2776:0:0:0,-23.7814,-250.076	0/1:138:70,68:70:2503:68:2435:-177.776,0,-183.98	0/1:84:44,40:44:1569:40:1416:-102.449,0,-116.213	0/1:66:32,34:32:1133:34:1196:-88.0746,0,-82.4087	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:70:25,45:25:896:45:1596:-122.856,0,-59.8883	0/0:96:96,0:96:3443:0:0:0,-28.8989,-310.082	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/1:49:26,23:26:936:23:811:-58.5587,0,-69.809	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/1:31:19,12:19:684:12:432:-29.8893,0,-52.5584	0/1:97:52,45:52:1864:45:1612:-116.17,0,-138.84	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:43:18,25:18:648:25:879:-66.4825,0,-45.7076	0/1:105:51,54:51:1812:54:1930:-142.368,0,-131.751	0/1:48:14,34:14:504:34:1220:-95.6574,0,-31.2487	0/0:81:81,0:81:2912:0:0:0,-24.3834,-261.824	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955
chr01	34901898	.	G	A	55495.4	PASS	AB=0.506414;ABP=4.82093;AC=44;AF=0.236559;AN=186;AO=2582;CIGAR=1X;DP=13279;DPB=13279;DPRA=1.01941;EPP=5583.72;EPPR=23161.8;GTI=3;LEN=1;MEANALT=1.03571;MQM=57.7521;MQMR=59.9063;NS=93;NUMALT=1;ODDS=2.17663;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91178;QR=378781;RO=10693;RPL=1861;RPP=1095.98;RPPR=2460.91;RPR=721;RUN=1;SAF=1858;SAP=1084.5;SAR=724;SRF=7079;SRP=2441.16;SRR=3614;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:19,21:19:680:21:743:-55.1521,0,-49.488	0/1:85:53,32:53:1876:32:1120:-75.5195,0,-143.529	0/0:164:162,2:162:5747:2:72:0,-42.5322,-510.513	0/0:502:501,1:501:17830:1:36:0,-147.519,-1600.55	0/1:59:34,25:34:1203:25:896:-63.1996,0,-90.8143	0/1:64:36,28:36:1287:28:1000:-71.0495,0,-96.8669	0/0:108:108,0:108:3860:0:0:0,-32.5112,-347.457	0/0:198:198,0:198:7017:0:0:0,-59.6039,-631.598	0/1:65:31,34:31:1103:34:1172:-86.2127,0,-80.0129	0/1:162:101,61:101:3600:61:2153:-144.759,0,-275.434	0/0:150:150,0:150:5272:0:0:0,-45.1545,-474.612	0/0:114:114,0:114:4005:0:0:0,-34.3174,-360.642	0/0:85:85,0:85:3010:0:0:0,-25.5875,-271.129	0/1:128:60,68:60:2116:68:2391:-176.915,0,-152.178	0/0:151:151,0:151:5358:0:0:0,-45.4555,-482.313	0/0:74:74,0:74:2624:0:0:0,-22.2762,-236.409	0/0:72:71,0:71:2518:0:0:0,-21.3731,-226.512	0/0:38:38,0:38:1315:0:0:0,-11.4391,-118.646	0/0:37:37,0:37:1293:0:0:0,-11.1381,-116.669	0/1:253:114,139:114:4057:139:4952:-368.715,0,-289.157	0/0:140:140,0:140:4970:0:0:0,-42.1442,-447.45	0/0:265:264,1:264:9352:1:36:0,-76.1837,-838.04	0/0:181:181,0:181:6434:0:0:0,-54.4864,-579.052	0/1:58:45,13:45:1577:13:456:-23.9135,0,-124.758	0/0:70:70,0:70:2474:0:0:0,-21.0721,-222.911	0/0:509:509,0:509:18007:0:0:0,-153.224,-1620.23	0/1:168:94,74:94:3330:74:2620:-185.473,0,-249.344	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:517:515,1:515:18199:1:36:0,-152.102,-1633.84	0/0:126:125,1:125:4449:1:36:0,-34.3315,-396.983	0/0:209:209,0:209:7402:0:0:0,-62.9153,-666.108	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:13:8,5:8:284:5:176:-12.2624,0,-21.99	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:419:419,0:419:14855:0:0:0,-126.132,-1336.68	0/1:131:68,63:68:2410:63:2222:-160.809,0,-177.721	0/1:90:46,44:46:1597:44:1521:-110.087,0,-116.922	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/1:167:96,71:96:3418:71:2492:-173.729,0,-257.562	0/1:23:12,11:12:428:11:392:-28.6964,0,-31.9351	0/0:130:130,0:130:4563:0:0:0,-39.1339,-410.84	0/0:140:139,1:139:4903:1:36:0,-38.5459,-437.817	0/1:125:57,68:57:2013:68:2423:-179.347,0,-143.811	0/1:230:117,113:117:4172:113:4019:-292.01,0,-306.366	0/0:132:132,0:132:4627:0:0:0,-39.736,-416.595	0/0:319:317,2:317:11268:2:72:0,-89.2049,-1007.18	0/0:177:176,1:176:6261:1:36:0,-49.6909,-559.956	0/1:240:114,126:114:4080:126:4482:-330.74,0,-295.139	0/1:177:83,94:83:2930:94:3308:-243.682,0,-209.451	0/1:26:14,12:14:496:12:432:-31.3259,0,-37.1465	0/1:179:86,93:86:3055:93:3275:-241.09,0,-221.293	0/0:105:104,1:104:3697:1:36:0,-28.0099,-329.333	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:175:175,0:175:6211:0:0:0,-52.6802,-559.09	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.868	0/1:16:7,9:7:239:9:315:-23.8367,0,-17.0262	0/1:32:16,16:16:576:16:568:-41.7615,0,-42.542	0/0:114:114,0:114:4040:0:0:0,-34.3174,-363.789	0/0:215:213,2:213:7542:2:72:0,-57.8847,-671.978	0/1:9:7,2:7:244:2:68:-3.72974,0,-19.5902	0/0:388:388,0:388:13716:0:0:0,-116.8,-1233.95	0/1:308:141,167:141:5012:167:5912:-438.597,0,-358.138	0/1:78:49,29:49:1729:29:1040:-70.434,0,-132.412	0/0:177:177,0:177:6310:0:0:0,-53.2823,-567.987	0/0:300:298,2:298:10600:2:72:0,-83.4723,-947.053	0/1:270:95,175:95:3367:175:6165:-472.739,0,-221.962	0/0:66:66,0:66:2300:0:0:0,-19.868,-207.261	0/1:54:33,21:33:1175:21:740:-50.6677,0,-89.8013	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.682	0/1:34:14,20:14:504:20:716:-54.5017,0,-35.4631	0/1:106:51,55:51:1783:55:1944:-143.327,0,-128.84	0/1:105:57,47:57:2026:47:1668:-118.741,0,-150.944	0/0:183:183,0:183:6384:0:0:0,-55.0885,-574.661	0/1:288:155,133:155:5525:133:4740:-338.604,0,-410.673	0/1:127:58,69:58:2048:69:2414:-179.284,0,-146.359	0/1:126:63,63:63:2222:63:2200:-160.336,0,-162.314	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:101:48,53:48:1703:53:1841:-135.561,0,-123.151	0/0:119:119,0:119:4216:0:0:0,-35.8226,-379.62	0/0:382:381,0:381:13538:0:0:0,-114.692,-1217.7	0/1:131:64,67:64:2273:67:2366:-173.549,0,-165.391	0/0:167:167,0:167:5917:0:0:0,-50.272,-532.635	0/1:89:34,55:34:1203:55:1947:-148.084,0,-81.7824	0/1:288:141,147:141:4994:147:5195:-380.169,0,-362.913	0/1:26:11,15:11:392:15:528:-40.0246,0,-27.7933	0/0:76:76,0:76:2644:0:0:0,-22.8783,-238.206	0/0:84:84,0:84:2975:0:0:0,-25.2865,-267.984	0/1:76:38,38:38:1326:38:1327:-96.8506,0,-96.7598	0/1:150:67,83:67:2304:83:2877:-214.017,0,-162.462	0/1:164:60,104:60:2132:104:3678:-281.348,0,-142.78	0/0:160:159,1:159:5653:1:36:0,-44.5665,-505.204	0/0:250:250,0:250:8828:0:0:0,-75.2575,-794.5
chr01	34901934	.	C	T	30012	PASS	AB=0.529323;ABP=27.7157;AC=44;AF=0.236559;AN=186;AO=1760;CIGAR=1X;DP=8306;DPB=8306;DPRA=0.834709;EPP=3790.14;EPPR=13850.6;GTI=1;LEN=1;MEANALT=1.05882;MQM=52.0136;MQMR=59.5477;NS=93;NUMALT=1;ODDS=0.851167;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63026;QR=233465;RO=6540;RPL=1756;RPP=3790.14;RPPR=13850.6;RPR=4;RUN=1;SAF=0;SAP=3824.8;SAR=1760;SRF=0;SRP=14204.4;SRR=6540;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:34,43:34:1200:43:1544:-115.353,0,-85.0962	0/1:55:23,32:23:815:32:1140:-86.0218,0,-57.0896	0/0:124:124,0:124:4418:0:0:0,-37.3277,-397.749	0/0:269:269,0:269:9596:0:0:0,-80.9771,-863.489	0/1:53:15,38:15:540:38:1368:-106.912,0,-32.9819	0/1:22:13,9:13:468:9:320:-22.4448,0,-35.8288	0/0:49:49,0:49:1739:0:0:0,-14.7505,-156.724	0/0:126:126,0:126:4489:0:0:0,-37.9298,-403.002	0/1:159:76,81:76:2715:81:2889:-211.021,0,-196.946	0/1:72:46,26:46:1630:26:932:-61.9969,0,-125.31	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.798	0/0:124:124,0:124:4436:0:0:0,-37.3277,-399.197	0/0:77:77,0:77:2760:0:0:0,-23.1793,-247.649	0/1:64:28,36:28:1004:36:1292:-96.6939,0,-71.4099	0/0:79:79,0:79:2791:0:0:0,-23.7814,-251.386	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.081	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.172	0/0:32:31,1:31:1108:1:36:0,-6.04373,-96.4231	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.499	0/1:114:57,57:57:2031:57:2025:-146.914,0,-148.743	0/0:156:155,0:155:5512:0:0:0,-46.6596,-495.703	0/0:216:215,1:215:7666:1:36:0,-61.4332,-686.135	0/0:96:96,0:96:3414:0:0:0,-28.8989,-307.374	0/1:58:32,26:32:1140:26:932:-66.4491,0,-85.4384	0/0:96:96,0:96:3431:0:0:0,-28.8989,-308.72	0/0:283:282,0:282:10051:0:0:0,-84.8905,-904.238	0/1:226:94,132:94:3371:132:4736:-356.718,0,-235.41	0/0:38:38,0:38:1338:0:0:0,-11.4391,-120.709	0/0:199:198,1:198:7083:1:36:0,-56.3157,-632.948	0/0:99:98,1:98:3481:1:36:0,-26.2088,-309.756	0/0:103:103,0:103:3680:0:0:0,-31.0061,-331.36	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:11:7,4:7:252:4:144:-9.98341,0,-19.7176	0/1:14:5,9:5:172:9:324:-24.822,0,-11.6036	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3052	0/1:7:2,5:2:72:5:180:-14.4032,0,-4.72951	0/0:227:226,0:226:8030:0:0:0,-68.0328,-721.738	0/1:160:76,84:76:2724:84:3016:-222.738,0,-197.053	0/1:67:42,25:42:1497:25:890:-60.004,0,-114.793	.:.:.:.:.:.:.:.	0/1:116:56,60:56:2008:60:2156:-158.578,0,-146.054	0/1:27:11,16:11:392:16:576:-43.8439,0,-27.4922	0/0:114:112,2:112:3990:2:72:0,-27.4904,-352.434	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.193	0/1:61:28,33:28:1004:33:1176:-86.4412,0,-71.9949	0/1:136:73,63:73:2612:63:2248:-161.007,0,-194.385	0/0:122:122,0:122:4352:0:0:0,-36.7257,-391.812	0/0:103:101,2:101:3593:2:72:0,-24.1824,-316.746	0/0:110:109,1:109:3891:1:36:0,-29.5219,-346.755	0/1:82:37,45:37:1320:45:1616:-120.428,0,-94.4175	0/1:121:53,67:53:1883:67:2408:-179.484,0,-133.406	0/1:17:7,10:7:252:10:360:-27.5644,0,-17.9114	0/1:97:57,40:57:2044:40:1417:-97.6669,0,-154.98	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5576	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5437	0/0:116:116,0:116:4139:0:0:0,-34.9195,-372.651	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.639	0/1:8:3,5:3:108:5:176:-13.7401,0,-7.66693	0/1:15:8,7:8:288:7:252:-18.4556,0,-21.752	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.047	0/0:114:114,0:114:4083:0:0:0,-34.3174,-367.638	0/1:5:3,2:3:104:2:68:-4.93386,0,-8.19766	0/0:205:205,0:205:7338:0:0:0,-61.7111,-659.197	0/1:119:50,69:50:1792:69:2476:-186.479,0,-125.102	0/1:45:21,24:21:756:24:864:-64.3862,0,-54.8081	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.584	0/0:148:148,0:148:5296:0:0:0,-44.5524,-476.745	0/1:96:28,68:28:1000:68:2431:-189.117,0,-61.4131	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:40:22,18:22:792:18:648:-46.0722,0,-59.5563	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.9592	0/1:10:5,5:5:176:5:180:-13.5102,0,-13.1747	0/1:116:48,68:48:1707:68:2436:-183.843,0,-118.983	0/1:82:46,36:46:1636:36:1284:-89.2469,0,-122.675	0/0:107:107,0:107:3836:0:0:0,-32.2102,-344.772	0/1:138:69,69:69:2460:69:2478:-180.245,0,-180.106	0/1:131:60,71:60:2136:71:2544:-187.679,0,-152.867	0/1:69:26,43:26:936:43:1540:-117.238,0,-63.7802	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4506	0/1:93:48,45:48:1724:45:1612:-116.739,0,-127.445	0/0:151:151,0:151:5407:0:0:0,-45.4555,-486.504	0/0:238:238,0:238:8497:0:0:0,-71.6451,-764.346	0/1:73:38,35:38:1341:35:1251:-90.6807,0,-99.0105	0/0:78:78,0:78:2778:0:0:0,-23.4803,-250.254	0/1:45:14,31:14:504:31:1112:-86.1649,0,-32.1471	0/1:140:62,78:62:2219:78:2796:-208.9,0,-157.827	0/1:23:18,5:18:644:5:180:-9.58676,0,-51.2713	0/0:86:86,0:86:3079:0:0:0,-25.8886,-276.368	0/0:89:89,0:89:3185:0:0:0,-26.7917,-286.839	0/1:48:25,23:25:896:23:824:-59.8051,0,-66.5109	0/1:111:59,52:59:2108:52:1872:-134.813,0,-156.575	0/1:85:29,56:29:1032:56:1989:-153.158,0,-67.6059	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.288	0/0:155:155,0:155:5537:0:0:0,-46.6596,-498.429
chr01	34912511	.	GGATGT	GAATGC,GAATGT	232944	PASS	AB=0.522004,0.473754;ABP=18.8738,25.5793;AC=143,45;AF=0.760638,0.239362;AN=188;AO=7078,1797;CIGAR=1M1X3M1X,1M1X4M;DP=8930;DPB=8932.33;DPRA=48,0.891506;EPP=15294.6,3844.58;EPPR=5.18177;GTI=2;LEN=6,1;MEANALT=2.04301,2.38;MQM=49.5212,55.2949;MQMR=60;NS=94;NUMALT=2;ODDS=1.57333;PAIRED=0,0;PAIREDR=0;PAO=9,0;PQA=312,0;PQR=30;PRO=1;QA=244029,62930;QR=36;RO=1;RPL=3572,971;RPP=4.34669,28.4166;RPPR=5.18177;RPR=3506,826;RUN=1,1;SAF=3563,966;SAP=3.71715,25.0332;SAR=3515,831;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,11,28:0:0:11,28:369,904:-102.59,-73.1403,-69.829,-29.778,0,-21.3491	1/2:107:0,53,54:0:0:53,54:1832,1891:-297.029,-153.819,-137.864,-143.552,0,-127.296	1/1:118:0,117,0:0:0:117,0:4026,0:-356.033,-35.2205,0,-356.033,-35.2205,-356.033	1/1:140:0,138,0:0:0:138,0:4765,0:-418.951,-41.5421,0,-418.951,-41.5421,-418.951	1/2:31:0,14,17:0:0:14,17:471,585:-85.2005,-47.7713,-43.5569,-37.7655,0,-32.648	1/2:44:0,29,14:0:0:29,14:998,500:-119.92,-40.7387,-32.0088,-79.2366,0,-75.0222	1/1:126:0,123,0:0:0:123,0:4220,0:-371.854,-37.0267,0,-371.854,-37.0267,-371.854	1/1:111:0,111,0:0:0:111,0:3820,0:-334.899,-33.4143,0,-334.899,-33.4143,-334.899	1/2:113:0,59,54:0:0:59,54:1986,1902:-312.912,-154.678,-136.917,-158.576,0,-142.321	1/2:74:0,45,29:0:0:45,29:1583,1022:-208.42,-83.3136,-69.7672,-125.454,0,-116.724	1/1:129:0,125,1:0:0:125,1:4287,36:-379.788,-37.6288,0,-376.859,-34.6805,-376.558	1/1:176:0,175,0:0:0:175,0:5993,0:-531.21,-52.6803,0,-531.21,-52.6803,-531.21	1/1:122:0,121,0:0:0:121,0:4185,0:-370.843,-36.4246,0,-370.843,-36.4246,-370.843	1/2:179:0,74,102:0:0:74,102:2548,3544:-487.303,-287.184,-264.908,-200.141,0,-169.436	1/1:113:0,112,0:0:0:112,0:3896,0:-341.05,-33.7154,0,-341.05,-33.7154,-341.05	1/1:131:0,130,0:0:0:130,0:4463,0:-395.968,-39.1339,0,-395.968,-39.1339,-395.968	1/1:131:0,130,0:0:0:130,0:4465,0:-390.376,-39.1339,0,-390.376,-39.1339,-390.376	1/1:83:0,83,0:0:0:83,0:2902,0:-255.12,-24.9855,0,-255.12,-24.9855,-255.12	1/1:87:1,85,0:1:36:85,0:2906,0:-253.701,-22.5996,0,-254.002,-25.5876,-256.94	1/2:200:0,114,85:0:0:114,85:4009,2965:-561.954,-241.019,-206.701,-321.032,0,-295.445	1/1:135:0,135,0:0:0:135,0:4657,0:-412.962,-40.6391,0,-412.962,-40.6391,-412.962	1/1:37:0,37,0:0:0:37,0:1252,0:-111.015,-11.1381,0,-111.015,-11.1381,-111.015	1/1:92:0,92,0:0:0:92,0:3173,0:-280.725,-27.6948,0,-280.725,-27.6948,-280.725	1/2:103:0,65,37:0:0:65,37:2269,1292:-286.353,-104.658,-85.0915,-181.711,0,-170.572	1/1:68:0,68,0:0:0:68,0:2327,0:-206.231,-20.47,0,-206.231,-20.47,-206.231	1/1:152:0,150,1:0:0:150,1:5161,36:-451.743,-45.1545,0,-448.808,-42.1896,-448.507	1/2:207:0,93,114:0:0:93,114:3199,4019:-582.611,-325.857,-297.861,-256.779,0,-222.461	1/1:74:0,74,0:0:0:74,0:2539,0:-223.342,-22.2762,0,-223.342,-22.2762,-223.342	1/1:159:0,159,0:0:0:159,0:5483,0:-482.031,-47.8638,0,-482.031,-47.8638,-482.031	1/1:83:0,83,0:0:0:83,0:2857,0:-251.407,-24.9855,0,-251.407,-24.9855,-251.407	1/1:99:0,98,0:0:0:98,0:3386,0:-298.455,-29.5009,0,-298.455,-29.5009,-298.455	1/1:5:0,5,0:0:0:5,0:177,0:-16.1688,-1.50515,0,-16.1688,-1.50515,-16.1688	1/2:12:0,7,5:0:0:7,5:232,180:-32.8168,-15.0469,-12.9397,-18.1114,0,-16.6063	1/2:9:0,5,4:0:0:5,4:173,144:-25.9592,-12.0858,-10.5806,-14.225,0,-13.0209	1/1:7:0,7,0:0:0:7,0:230,0:-20.3567,-2.10721,0,-20.3567,-2.10721,-20.3567	1/2:2:0,1,1:0:0:1,1:36,36:-6.22815,-3.29039,-2.98936,-3.29724,0,-2.99621	1/1:278:0,275,0:0:0:275,0:9511,0:-835.069,-82.7833,0,-835.069,-82.7833,-835.069	1/2:57:0,36,21:0:0:36,21:1255,740:-160.662,-60.2311,-49.3941,-100.779,0,-94.4573	1/2:109:0,59,49:0:0:59,49:2043,1713:-300.377,-139.183,-121.422,-161.189,0,-146.439	1/2:5:0,3,2:0:0:3,2:99,72:-14.1973,-6.21747,-5.31438,-8.32704,0,-7.72498	1/2:112:0,49,61:0:0:49,61:1712,2141:-309.661,-173.883,-159.132,-135.832,0,-117.469	1/2:63:0,34,29:0:0:34,29:1193,992:-175.757,-80.7924,-70.5574,-95.3072,0,-86.5773	1/1:112:0,110,0:0:0:110,0:3784,0:-335.863,-33.1133,0,-335.863,-33.1133,-335.863	1/1:142:0,141,0:0:0:141,0:4886,0:-426.161,-42.4452,0,-426.161,-42.4452,-426.161	1/2:108:0,51,57:0:0:51,57:1759,2017:-303.052,-163.753,-148.401,-139.284,0,-122.125	1/2:59:0,28,31:0:0:28,31:962,1086:-164.252,-88.371,-79.9422,-76.2226,0,-66.8907	1/1:82:0,81,0:0:0:81,0:2729,0:-241.724,-24.3834,0,-241.724,-24.3834,-241.724	1/1:79:0,78,1:0:0:78,1:2688,36:-237.367,-23.4803,0,-234.438,-20.1921,-234.137	1/1:66:0,66,0:0:0:66,0:2297,0:-200.334,-19.868,0,-200.334,-19.868,-200.334	1/2:97:0,54,43:0:0:54,43:1845,1523:-270.488,-124.051,-107.795,-146.782,0,-133.838	1/2:96:0,58,37:0:0:58,37:2010,1292:-263.179,-104.413,-86.9529,-158.798,0,-147.66	1/1:2:0,2,0:0:0:2,0:71,0:-6.60546,-0.60206,0,-6.60546,-0.60206,-6.60546	1/2:72:0,38,33:0:0:38,33:1312,1172:-200.068,-95.1633,-83.7242,-104.951,0,-95.0165	1/1:26:0,26,0:0:0:26,0:892,0:-79.0815,-7.82678,0,-79.0815,-7.82678,-79.0815	1/1:14:0,14,0:0:0:14,0:489,0:-43.6411,-4.21442,0,-43.6411,-4.21442,-43.6411	1/1:87:0,86,1:0:0:86,1:2965,36:-261.579,-25.8886,0,-258.641,-22.5913,-258.34	1/1:65:0,62,0:0:0:62,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chr01	34940493	.	T	C	128333	PASS	AB=0.46652;ABP=38.3432;AC=141;AF=0.758065;AN=186;AO=6128;CIGAR=1X;DP=8078;DPB=8078;DPRA=0;EPP=13283.7;EPPR=4235.21;GTI=0;LEN=1;MEANALT=1.01075;MQM=47.9688;MQMR=53.2991;NS=93;NUMALT=1;ODDS=5.46807;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219066;QR=69791;RO=1949;RPL=3;RPP=13283.7;RPPR=4235.21;RPR=6125;RUN=1;SAF=6128;SAP=13309.8;SAR=0;SRF=1949;SRP=4235.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:35,29:35:1260:29:1032:-73.1346,0,-93.764	0/1:79:35,44:35:1252:44:1567:-115.854,0,-88.8355	1/1:147:0,147:0:0:147:5253:-466.892,-44.2514,0	1/1:150:1,149:1:36:149:5335:-473.206,-41.5599,0	0/1:66:30,36:30:1080:36:1283:-94.9222,0,-77.3982	0/1:66:34,32:34:1224:32:1152:-83.4043,0,-90.3903	1/1:112:0,112:0:0:112:4020:-358.498,-33.7154,0	1/1:118:0,118:0:0:118:4206:-373.609,-35.5215,0	0/1:154:82,72:82:2910:72:2565:-181.789,0,-214.575	0/1:86:50,36:50:1777:36:1285:-89.4107,0,-134.148	1/1:81:0,81:0:0:81:2889:-257.961,-24.3834,0	1/1:81:0,81:0:0:81:2873:-254.807,-24.3834,0	1/1:70:1,69:1:36:69:2455:-213.17,-17.4807,0	0/1:100:57,43:57:2048:43:1536:-107.097,0,-153.407	1/1:53:0,53:0:0:53:1891:-168.865,-15.9546,0	1/1:63:0,63:0:0:63:2260:-201.886,-18.9649,0	1/1:82:0,82:0:0:82:2939:-260.442,-24.6845,0	1/1:44:0,44:0:0:44:1584:-140.489,-13.2453,0	1/1:32:2,30:2:68:30:1080:-89.7586,-3.59708,0	0/1:142:86,56:86:3068:56:2016:-137.432,0,-232.299	1/1:86:0,86:0:0:86:3079:-273.441,-25.8886,0	1/1:109:0,109:0:0:109:3896:-349.472,-32.8123,0	1/1:65:1,64:1:36:64:2300:-202.285,-15.9805,0	0/1:72:50,22:50:1781:22:788:-48.9466,0,-138.413	1/1:105:0,105:0:0:105:3745:-333.466,-31.6082,0	1/1:239:0,239:0:0:239:8555:-765.185,-71.9462,0	0/1:172:86,86:86:3061:86:3075:-220.047,0,-223.059	1/1:16:0,16:0:0:16:576:-51.691,-4.81648,0	1/1:225:0,225:0:0:225:8020:-718.34,-67.7318,0	1/1:137:1,136:1:36:136:4875:-430.509,-37.6497,0	1/1:80:0,80:0:0:80:2864:-255.747,-24.0824,0	1/1:10:0,10:0:0:10:360:-32.1129,-3.0103,0	0/1:22:16,6:16:572:6:216:-12.8635,0,-44.9143	0/1:11:5,6:5:180:6:216:-16.3426,0,-13.1276	1/1:13:0,13:0:0:13:468:-42.1665,-3.91339,0	0/1:11:10,1:10:360:1:36:-0.262104,0,-29.2179	1/1:140:0,140:0:0:140:5015:-447.86,-42.1442,0	0/1:124:65,59:65:2332:59:2106:-149.697,0,-172.115	0/1:51:18,33:18:648:33:1184:-89.9537,0,-42.8866	0/1:4:2,2:2:68:2:72:-5.57282,0,-5.24514	0/1:106:59,47:59:2112:47:1680:-117.982,0,-158.086	0/1:34:22,12:22:792:12:432:-28.6432,0,-61.2343	1/1:159:0,159:0:0:159:5703:-508.299,-47.8638,0	1/1:45:0,45:0:0:45:1616:-143.674,-13.5464,0	0/1:41:21,20:21:756:20:716:-51.8189,0,-55.8193	0/1:106:45,61:45:1616:61:2176:-163.378,0,-113.615	1/1:107:0,107:0:0:107:3824:-340.277,-32.2102,0	1/1:196:6,190:6:216:190:6777:-584.687,-39.2318,0	1/1:73:0,73:0:0:73:2615:-233.798,-21.9752,0	0/1:138:70,68:70:2485:68:2436:-175.661,0,-181.491	0/1:146:77,69:77:2772:69:2449:-176.001,0,-205.366	0/1:10:7,3:7:248:3:108:-7.01025,0,-19.6293	0/1:135:70,65:70:2516:65:2317:-166.056,0,-185.302	1/1:53:0,53:0:0:53:1891:-169.429,-15.9546,0	.:.:.:.:.:.:.:.	1/1:155:1,154:1:36:154:5502:-485.236,-43.0682,0	1/1:11:0,11:0:0:11:392:-34.916,-3.31133,0	0/1:5:2,3:2:72:3:108:-8.537,0,-5.32832	0/1:13:3,10:3:108:10:356:-28.1681,0,-6.15699	1/1:99:0,99:0:0:99:3551:-315.48,-29.802,0	1/1:81:1,80:1:36:80:2875:-251.522,-20.792,0	0/1:6:5,1:5:180:1:36:-1.77259,0,-14.7288	1/1:105:0,105:0:0:105:3764:-337.462,-31.6082,0	0/1:121:67,54:67:2412:54:1927:-135.549,0,-180.545	0/1:104:41,63:41:1472:63:2264:-170.53,0,-101.139	1/1:71:0,71:0:0:71:2520:-225.456,-21.3731,0	1/1:113:0,113:0:0:113:4035:-361.139,-34.0164,0	0/1:141:104,37:104:3713:37:1315:-75.5645,0,-290.688	1/1:83:0,83:0:0:83:2952:-262.909,-24.9855,0	0/1:85:46,39:46:1652:39:1385:-97.6979,0,-122.648	1/1:40:0,40:0:0:40:1431:-128.67,-12.0412,0	0/1:45:19,26:19:680:26:920:-68.707,0,-47.9125	0/1:189:97,92:97:3492:92:3270:-234.799,0,-256.746	0/1:86:46,40:46:1644:40:1409:-99.5166,0,-122.093	1/1:155:0,155:0:0:155:5527:-489.965,-46.6597,0	0/1:106:65,41:65:2328:41:1472:-100.128,0,-177.501	0/1:139:72,67:72:2565:67:2408:-172.9,0,-187.372	0/1:97:58,39:58:2088:39:1392:-95.5044,0,-158.633	1/1:26:0,26:0:0:26:930:-82.8794,-7.82678,0	0/1:79:41,38:41:1472:38:1364:-98.2372,0,-108.746	1/1:111:0,111:0:0:111:3963:-352.753,-33.4143,0	1/1:189:0,189:0:0:189:6764:-603.613,-56.8947,0	0/1:48:22,26:22:788:26:932:-68.7665,0,-56.7225	1/1:71:0,71:0:0:71:2535:-226.608,-21.3731,0	0/1:38:23,15:23:828:15:536:-36.8761,0,-63.1595	0/1:104:44,60:44:1576:60:2149:-160.51,0,-110.544	0/1:15:5,10:5:180:10:360:-27.2886,0,-12.009	1/1:53:0,53:0:0:53:1882:-167.008,-15.9546,0	1/1:74:0,74:0:0:74:2649:-236.775,-22.2762,0	0/1:64:27,37:27:955:37:1328:-97.5932,0,-66.8013	0/1:152:81,70:81:2908:70:2504:-177.358,0,-215.341	0/1:52:35,17:35:1260:17:612:-39.4546,0,-97.68	1/1:37:0,37:0:0:37:1332:-119.52,-11.1381,0	1/1:84:0,84:0:0:84:3008:-269.063,-25.2865,0
chr01	35081834	.	C	T	48279.6	PASS	AB=0.388484;ABP=166.221;AC=138;AF=0.75;AN=184;AO=2353;CIGAR=1X;DP=3291;DPB=3291;DPRA=9.11944;EPP=5112.48;EPPR=2037.68;GTI=2;LEN=1;MEANALT=1.01111;MQM=59.9643;MQMR=59.9979;NS=92;NUMALT=1;ODDS=0.985202;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83066;QR=32983;RO=937;RPL=0;RPP=5112.48;RPPR=2037.68;RPR=2353;RUN=1;SAF=0;SAP=5112.48;SAR=2353;SRF=0;SRP=2037.68;SRR=937;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/1:61:34,27:34:1204:27:947:-67.1809,0,-90.3027	1/1:38:0,38:0:0:38:1348:-121.62,-11.4391,0	1/1:57:0,57:0:0:57:2023:-182.342,-17.1587,0	0/1:23:12,11:12:432:11:388:-28.3337,0,-32.2975	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	1/1:44:0,44:0:0:44:1541:-138.98,-13.2453,0	1/1:56:0,56:0:0:56:1981:-178.563,-16.8577,0	0/1:36:24,12:24:823:12:413:-26.6618,0,-63.5445	0/1:50:35,15:35:1222:15:528:-32.7999,0,-95.2305	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:20:0,20:0:0:20:714:-64.5873,-6.0206,0	1/1:30:0,30:0:0:30:1051:-94.8996,-9.0309,0	0/1:29:14,15:14:482:15:532:-39.4832,0,-34.9762	1/1:18:1,17:1:36:17:608:-51.4537,-1.82027,0	1/1:16:0,16:0:0:16:555:-50.276,-4.81648,0	1/1:21:0,21:0:0:21:738:-66.743,-6.32163,0	1/1:17:0,17:0:0:17:591:-53.5153,-5.11751,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:39:16,23:16:568:23:812:-61.6607,0,-39.7117	1/1:34:0,34:0:0:34:1189:-107.313,-10.235,0	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:31:19,12:19:646:12:420:-28.8021,0,-49.1233	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:140:1,139:1:32:139:4917:-439.487,-38.9449,0	0/1:56:28,28:28:989:28:995:-73.0063,0,-72.4643	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:96:0,96:0:0:96:3385:-304.868,-28.8989,0	1/1:76:1,75:1:36:75:2650:-235.149,-19.28,0	1/1:45:0,45:0:0:45:1597:-144.018,-13.5464,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:82:0,82:0:0:82:2858:-257.457,-24.6845,0	0/1:69:44,25:44:1551:25:881:-58.8357,0,-119.11	0/1:19:15,4:15:523:4:140:-7.22501,0,-41.6789	.:.:.:.:.:.:.:.	0/1:46:33,13:33:1167:13:445:-26.5288,0,-91.489	0/1:12:6,6:6:204:6:212:-15.8124,0,-15.081	1/1:37:0,37:0:0:37:1313:-118.471,-11.1381,0	1/1:20:0,20:0:0:20:690:-62.4193,-6.0206,0	0/1:18:9,9:9:301:9:315:-23.2687,0,-21.9952	0/1:28:21,7:21:737:7:229:-12.5007,0,-58.2218	1/1:29:0,29:0:0:29:1022:-92.2906,-8.72987,0	1/1:54:0,54:0:0:54:1900:-171.276,-16.2556,0	1/1:47:0,47:0:0:47:1668:-150.392,-14.1484,0	0/1:58:29,29:29:1036:29:1032:-75.7337,0,-76.0942	0/1:109:74,34:74:2639:34:1212:-76.5154,0,-204.886	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:58:28,30:28:991:30:1064:-78.6119,0,-72.0438	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:28:0,28:0:0:28:988:-89.2339,-8.42884,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:27:0,27:0:0:27:935:-84.4606,-8.12781,0	1/1:66:0,66:0:0:66:2335:-210.41,-19.868,0	.:.:.:.:.:.:.:.	1/1:76:0,76:0:0:76:2696:-242.886,-22.8783,0	0/1:90:60,30:60:2136:30:1076:-70.0602,0,-165.416	0/1:40:30,10:30:1063:10:343:-19.1585,0,-83.9396	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	1/1:57:2,55:2:72:55:1918:-166.058,-10.322,0	0/1:90:73,17:73:2611:17:608:-27.9593,0,-208.145	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:46:21,25:21:729:25:875:-65.2182,0,-52.0813	1/1:57:1,56:1:36:56:1984:-175.21,-13.5604,0	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/1:40:29,11:29:1005:11:388:-23.2162,0,-78.7171	0/1:25:17,8:17:603:8:284:-18.3776,0,-47.0738	1/1:78:0,78:0:0:78:2770:-249.171,-23.4803,0	0/1:59:42,17:42:1482:17:608:-37.2913,0,-115.912	0/1:30:17,13:17:595:13:460:-32.7045,0,-44.8458	0/1:25:15,10:15:523:10:360:-25.2186,0,-39.8727	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:39:22,17:22:770:17:600:-42.589,0,-57.8792	1/1:37:0,37:0:0:37:1315:-118.65,-11.1381,0	1/1:69:0,69:0:0:69:2426:-218.596,-20.7711,0	0/1:70:42,28:42:1455:28:975:-66.9895,0,-110.169	1/1:23:0,23:0:0:23:814:-73.5814,-6.92369,0	0/1:17:7,10:7:244:10:348:-26.5376,0,-17.1819	0/1:35:17,18:17:596:18:636:-47.032,0,-43.4317	0/1:25:10,15:10:356:15:523:-39.8727,0,-24.8555	1/1:28:0,28:0:0:28:984:-88.8734,-8.42884,0	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	0/1:19:13,6:13:451:6:216:-14.0709,0,-35.2002	0/1:39:16,23:16:546:23:816:-62.0215,0,-37.7216	0/1:16:13,3:13:451:3:108:-5.25869,0,-36.1033	1/1:38:0,38:0:0:38:1347:-121.53,-11.4391,0	1/1:34:0,34:0:0:34:1203:-108.575,-10.235,0
chr01	35082403	.	G	A	17740.4	PASS	AB=0.466752;ABP=25.5359;AC=43;AF=0.231183;AN=186;AO=1101;CIGAR=1X;DP=5441;DPB=5441;DPRA=0.975463;EPP=2393.8;EPPR=9425.03;GTI=2;LEN=1;MEANALT=1.02222;MQM=60;MQMR=59.9829;NS=93;NUMALT=1;ODDS=0.685763;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39319;QR=154713;RO=4339;RPL=0;RPP=2393.8;RPPR=9416.35;RPR=1101;RUN=1;SAF=0;SAP=2393.8;SAR=1101;SRF=1;SRP=9416.35;SRR=4338;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:23,11:23:804:11:396:-25.7477,0,-62.4415	0/1:78:42,36:42:1485:36:1281:-92.1109,0,-110.462	0/0:55:55,0:55:1950:0:0:0,-16.5566,-175.775	0/0:85:85,0:85:3007:0:0:0,-25.5875,-270.861	0/1:28:18,10:18:648:10:356:-23.9524,0,-50.223	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.949	0/1:50:25,25:25:896:25:900:-66.2695,0,-65.9033	0/1:53:32,21:32:1152:21:743:-51.2387,0,-88.0356	0/0:54:54,0:54:1898:0:0:0,-16.2556,-171.094	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/1:78:44,34:44:1572:34:1224:-86.9867,0,-118.291	0/0:35:35,0:35:1235:0:0:0,-10.536,-111.453	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/1:60:32,28:32:1129:28:994:-71.7126,0,-83.8545	0/0:64:64,0:64:2264:0:0:0,-19.2659,-204.021	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.188	0/1:81:47,34:47:1673:34:1208:-84.6427,0,-126.472	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:235:235,0:235:8418:0:0:0,-70.742,-757.604	0/1:102:59,43:59:2093:43:1531:-107.377,0,-157.933	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:132:132,0:132:4736:0:0:0,-39.736,-426.397	0/0:118:117,1:117:4156:1:36:0,-31.9233,-370.625	0/0:131:131,0:131:4672:0:0:0,-39.4349,-420.641	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18	0/1:137:68,68:68:2425:68:2429:-177.564,0,-177.204	0/1:49:26,23:26:908:23:824:-59.7328,0,-67.282	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:79:37,42:37:1328:42:1496:-111.153,0,-96.0409	0/1:23:13,10:13:468:10:351:-25.003,0,-35.536	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/1:36:19,17:19:684:17:608:-44.2149,0,-51.0532	0/1:80:35,45:35:1256:45:1605:-120.657,0,-89.2629	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:102:102,0:102:3637:0:0:0,-30.7051,-327.534	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/1:70:35,35:35:1260:35:1260:-92.6334,0,-92.6334	0/1:82:50,32:50:1800:32:1124:-76.7807,0,-137.598	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:62:29,33:29:1044:33:1176:-87.4839,0,-75.6109	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:67:67,0:67:2376:0:0:0,-20.169,-214.096	0/0:40:40,0:40:1419:0:0:0,-12.0412,-128.007	.:.:.:.:.:.:.:.	0/1:16:13,3:13:453:3:108:-5.25869,0,-36.2831	0/0:29:27,2:27:968:2:72:0,-1.89315,-80.6006	0/0:125:125,0:125:4453:0:0:0,-37.6287,-400.941	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/1:139:70,69:70:2511:69:2465:-180.259,0,-184.398	0/1:41:19,22:19:680:22:792:-59.2634,0,-49.1869	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:120:120,0:120:4288:0:0:0,-36.1236,-386.096	0/1:51:18,33:18:629:33:1161:-89.4422,0,-41.5812	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/1:64:36,28:36:1296:28:1008:-71.7704,0,-97.678	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:68:40,28:40:1436:28:1000:-69.8453,0,-109.059	0/1:32:19,13:19:652:13:464:-32.4645,0,-49.3653	0/0:211:211,0:211:7521:0:0:0,-63.5173,-676.902	0/1:60:39,21:39:1385:21:752:-49.9445,0,-106.885	0/1:84:43,41:43:1533:41:1456:-106.049,0,-112.975	0/1:41:21,20:21:740:20:720:-52.7865,0,-54.5811	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:58:35,23:35:1251:23:828:-57.3844,0,-95.4345	0/0:43:43,0:43:1504:0:0:0,-12.9443,-135.65	0/0:104:103,1:103:3666:1:36:0,-27.7088,-326.546	0/1:80:45,35:45:1611:35:1260:-89.6231,0,-121.197	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:57:32,25:32:1144:25:892:-63.441,0,-86.1108	0/1:90:37,53:37:1316:53:1889:-143.194,0,-91.6491	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:43:27,16:27:959:16:576:-39.2307,0,-73.6811	0/1:102:53,49:53:1896:49:1746:-126.719,0,-140.213	0/1:55:23,32:23:820:32:1152:-87.4335,0,-57.5659	0/0:54:54,0:54:1918:0:0:0,-16.2556,-172.896	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22
chr01	35082434	.	A	C	91747.5	PASS	AB=0.532224;ABP=24.1421;AC=143;AF=0.768817;AN=186;AO=4287;CIGAR=1X;DP=5393;DPB=5393;DPRA=29.2989;EPP=9260.07;EPPR=2357.01;GTI=3;LEN=1;MEANALT=1.05435;MQM=59.9879;MQMR=60;NS=93;NUMALT=1;ODDS=1.64673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153008;QR=39359;RO=1100;RPL=4281;RPP=9260.07;RPPR=2365.64;RPR=6;RUN=1;SAF=0;SAP=9312.11;SAR=4287;SRF=1;SRP=2382.95;SRR=1099;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:13,23:13:464:23:813:-62.652,0,-31.2604	0/1:77:36,41:36:1296:41:1453:-107.885,0,-93.7646	1/1:55:1,54:1:36:54:1925:-169.927,-12.9584,0	1/1:83:0,83:0:0:83:2970:-267.533,-24.9855,0	0/1:28:10,18:10:360:18:640:-49.5005,0,-24.3155	0/1:34:15,19:15:527:19:680:-51.2941,0,-37.5252	1/1:58:0,57:0:0:57:2025:-182.161,-17.1587,0	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:48:24,24:24:860:24:849:-62.2784,0,-63.2724	0/1:54:23,31:23:809:31:1108:-83.7754,0,-56.8727	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	0/1:78:34,44:34:1220:44:1584:-119.371,0,-86.6265	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:36:0,36:0:0:36:1281:-115.591,-10.8371,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:21:0,21:0:0:21:738:-66.7414,-6.32163,0	0/1:60:26,34:26:927:34:1209:-91.0461,0,-65.6856	1/1:61:0,61:0:0:61:2167:-195.296,-18.3628,0	1/1:23:0,23:0:0:23:812:-73.4002,-6.92369,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:81:34,47:34:1209:47:1677:-126.832,0,-84.7307	1/1:38:0,38:0:0:38:1353:-122.068,-11.4391,0	1/1:232:0,232:0:0:232:8322:-748.966,-69.839,0	0/1:99:42,57:42:1500:57:1990:-149.566,0,-105.493	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:132:0,132:0:0:132:4725:-425.406,-39.736,0	1/1:121:1,120:1:36:120:4288:-382.498,-32.8264,0	1/1:126:0,126:0:0:126:4511:-406.157,-37.9298,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:116:0,116:0:0:116:4145:-373.232,-34.9195,0	0/1:140:67,73:67:2395:73:2608:-192.823,0,-173.662	0/1:50:24,26:24:847:26:936:-69.508,0,-61.4972	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:78:41,37:41:1472:37:1328:-96.3419,0,-109.296	0/1:23:9,13:9:320:13:468:-35.4772,0,-22.1603	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:36:17,19:17:612:19:684:-51.0532,0,-44.5764	0/1:80:45,35:45:1620:35:1260:-89.6231,0,-122.008	1/1:65:0,65:0:0:65:2320:-209.06,-19.567,0	1/1:101:0,101:0:0:101:3613:-325.374,-30.404,0	1/1:58:0,58:0:0:58:2061:-185.759,-17.4597,0	0/1:67:34,33:34:1216:33:1188:-87.0596,0,-89.5776	0/1:85:35,50:35:1252:50:1770:-133.992,0,-87.3975	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:63:33,30:33:1184:30:1076:-78.188,0,-87.9034	1/1:20:0,20:0:0:20:697:-63.0507,-6.0206,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:39:0,39:0:0:39:1389:-125.307,-11.7402,0	.:.:.:.:.:.:.:.	0/1:16:3,13:3:93:13:457:-36.6461,0,-3.86025	1/1:29:2,27:2:72:27:947:-78.7057,-1.89315,0	1/1:123:0,122:0:0:122:4357:-391.944,-36.7257,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:95:0,95:0:0:95:3380:-304.414,-28.5979,0	0/1:139:70,69:70:2512:69:2427:-176.839,0,-184.489	0/1:43:23,20:23:824:20:720:-52.1845,0,-61.539	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:116:0,116:0:0:116:4172:-375.66,-34.9195,0	0/1:49:32,17:32:1133:17:608:-40.3016,0,-87.5262	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:64:28,36:28:1004:36:1292:-97.3178,0,-71.4099	1/1:66:0,66:0:0:66:2349:-211.668,-19.868,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:66:27,39:27:968:39:1370:-103.726,0,-67.5694	0/1:33:14,19:14:500:19:663:-50.0595,0,-35.4022	1/1:210:0,210:0:0:210:7482:-673.418,-63.2163,0	0/1:60:21,38:21:756:38:1348:-103.5,0,-50.2466	0/1:82:41,41:41:1463:41:1468:-107.732,0,-107.281	0/1:40:19,21:19:684:21:752:-55.9651,0,-49.8491	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:59:24,35:24:860:35:1252:-95.2243,0,-59.9611	1/1:39:0,39:0:0:39:1373:-123.864,-11.7402,0	1/1:104:1,103:1:36:103:3665:-326.456,-27.7088,0	0/1:81:37,42:37:1328:42:1508:-111.873,0,-95.6811	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:56:24,32:24:860:32:1152:-87.1325,0,-60.8642	0/1:88:51,37:51:1832:37:1309:-91.6198,0,-138.67	0/1:28:12,16:12:432:16:564:-42.6615,0,-30.7924	1/1:45:1,44:1:36:44:1580:-138.893,-9.94808,0	1/1:41:0,41:0:0:41:1461:-131.784,-12.3422,0	0/1:42:16,26:16:576:26:923:-70.7435,0,-39.5317	0/1:103:48,55:48:1724:55:1976:-147.109,0,-124.439	0/1:56:31,25:31:1108:25:873:-62.0269,0,-83.1733	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:70:0,70:0:0:70:2501:-225.341,-21.0721,0
chr01	35113790	.	C	A	29538.2	PASS	AB=0.515708;ABP=10.2417;AC=46;AF=0.244681;AN=188;AO=1756;CIGAR=1X;DP=7833;DPB=7833;DPRA=0.928041;EPP=3816.12;EPPR=13155.6;GTI=1;LEN=1;MEANALT=1.07547;MQM=59.4727;MQMR=59.9718;NS=94;NUMALT=1;ODDS=1.01129;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62684;QR=215850;RO=6069;RPL=0;RPP=3816.12;RPPR=13138.3;RPR=1756;RUN=1;SAF=0;SAP=3816.12;SAR=1756;SRF=2;SRP=13164.3;SRR=6067;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:24,18:24:841:18:644:-45.6473,0,-63.3631	0/1:110:59,51:59:2093:51:1815:-130.513,0,-155.525	0/0:97:95,2:95:3398:2:72:0,-22.3632,-299.197	0/0:126:125,0:125:4460:0:0:0,-37.6287,-401.368	0/1:76:40,36:40:1432:36:1287:-93.2417,0,-106.299	0/1:155:72,83:72:2547:83:2980:-221.328,0,-182.819	0/0:73:70,0:70:2507:0:0:0,-21.0721,-225.522	0/0:169:167,2:167:5930:2:72:0,-44.0373,-526.963	0/1:88:44,44:44:1584:44:1568:-114.718,0,-116.361	0/1:88:33,55:33:1184:55:1956:-149.697,0,-80.3777	0/0:69:69,0:69:2435:0:0:0,-20.7711,-218.622	0/0:59:59,0:59:2084:0:0:0,-17.7608,-187.722	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/1:59:28,31:28:983:31:1094:-81.0023,0,-71.0218	0/0:66:66,0:66:2315:0:0:0,-19.868,-208.609	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:67:67,0:67:2380:0:0:0,-20.169,-214.459	0/0:40:40,0:40:1381:0:0:0,-12.0412,-124.582	0/0:54:54,0:54:1891:0:0:0,-16.2556,-170.465	0/1:124:63,61:63:2220:61:2183:-159.32,0,-162.735	0/0:189:189,0:189:6763:0:0:0,-56.8947,-608.743	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:82:82,0:82:2919:0:0:0,-24.6845,-262.945	0/1:115:55,59:55:1940:59:2124:-156.742,0,-140.197	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.211	0/0:251:251,0:251:8899:0:0:0,-75.5585,-800.884	0/1:220:112,107:112:4012:107:3798:-275.166,0,-294.983	0/0:38:38,0:38:1327:0:0:0,-11.4391,-119.726	0/0:193:193,0:193:6924:0:0:0,-58.0988,-623.225	0/0:105:104,1:104:3687:1:36:0,-28.0099,-328.434	0/0:84:83,1:83:2965:1:32:0,-22.0872,-263.882	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:17:6,11:6:216:11:392:-30.4979,0,-14.673	0/1:7:5,2:5:171:2:72:-4.72951,0,-13.6182	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:188:188,0:188:6688:0:0:0,-56.5936,-602	0/1:106:75,31:75:2661:31:1107:-68.026,0,-207.826	0/1:42:22,20:22:773:20:720:-52.4855,0,-57.2462	0/1:7:4,2:4:144:2:72:-4.67071,0,-11.1476	0/1:90:56,34:56:2012:34:1224:-83.3651,0,-154.26	0/1:46:25,21:25:879:21:739:-52.9785,0,-65.5794	0/0:127:126,1:126:4507:1:36:0,-34.6325,-402.2	0/0:91:91,0:91:3229:0:0:0,-27.3937,-290.832	0/1:50:25,25:25:877:25:880:-64.4486,0,-64.1937	0/1:129:53,76:53:1896:76:2700:-204.363,0,-132.085	0/0:105:105,0:105:3722:0:0:0,-31.6081,-335.181	0/0:169:167,2:167:5992:2:63:0,-44.8915,-533.401	0/0:89:89,0:89:3177:0:0:0,-26.7917,-286.153	0/1:117:62,55:62:2211:55:1960:-141.438,0,-164.033	0/1:167:91,76:91:3235:76:2724:-195.104,0,-241.101	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:64:30,34:30:1071:34:1224:-91.193,0,-77.4357	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:59:58,1:58:2088:1:36:0,-14.1625,-184.592	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	1/1:5:0,5:0:0:5:180:-16.5381,-1.50515,0	0/1:22:13,9:13:468:9:324:-22.8416,0,-35.837	0/0:83:82,1:82:2903:1:36:0,-21.3872,-257.906	0/0:83:83,0:83:2942:0:0:0,-24.9855,-265.015	0/1:11:3,8:3:108:8:288:-22.9283,0,-6.76384	0/0:150:150,0:150:5368:0:0:0,-45.1545,-483.252	0/1:169:84,85:84:2997:85:3052:-223.966,0,-219.073	0/1:82:42,40:42:1491:40:1430:-104.301,0,-109.799	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:126:126,0:126:4499:0:0:0,-37.9298,-405.075	0/1:106:27,79:27:964:79:2832:-222.554,0,-55.1676	0/0:18:18,0:18:627:0:0:0,-5.41854,-56.7544	0/1:59:16,43:16:576:43:1521:-119.399,0,-34.4142	0/0:70:70,0:70:2455:0:0:0,-21.0721,-221.204	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:63:29,34:29:1040:34:1224:-91.4884,0,-74.9481	0/1:38:21,17:21:748:17:612:-43.9661,0,-56.2062	0/0:185:185,0:185:6570:0:0:0,-55.6905,-591.385	0/1:138:58,80:58:2075:80:2867:-216.71,0,-145.478	0/1:92:63,29:63:2255:29:1031:-65.3993,0,-175.517	0/1:67:26,40:26:923:40:1419:-107.925,0,-63.3034	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:59:36,23:36:1288:23:824:-56.6955,0,-98.4628	0/0:110:110,0:110:3920:0:0:0,-33.1133,-352.992	0/0:214:214,0:214:7584:0:0:0,-64.4204,-682.6	0/1:79:39,40:39:1383:40:1425:-104.718,0,-100.987	0/0:51:51,0:51:1800:0:0:0,-15.3525,-162.279	0/1:69:27,42:27:944:42:1466:-111.438,0,-64.5003	0/1:117:53,64:53:1860:64:2296:-171.649,0,-132.456	0/1:52:21,31:21:744:31:1112:-84.7263,0,-51.6308	0/0:68:68,0:68:2399:0:0:0,-20.47,-215.848	0/0:77:77,0:77:2717:0:0:0,-23.1793,-244.774	0/1:37:15,22:15:532:22:788:-60.0985,0,-37.075	0/1:79:36,43:36:1280:43:1536:-114.658,0,-91.7219	0/1:75:16,59:16:572:59:2091:-165.851,0,-29.2362	0/0:85:85,0:85:3009:0:0:0,-25.5875,-271.042	0/0:90:90,0:90:3181:0:0:0,-27.0927,-286.515
chr01	35113798	.	G	A	29960.7	PASS	AB=0.512701;ABP=7.8091;AC=46;AF=0.244681;AN=188;AO=1770;CIGAR=1X;DP=7997;DPB=7997;DPRA=0.887502;EPP=3837.84;EPPR=13468.4;GTI=1;LEN=1;MEANALT=1.01961;MQM=59.4955;MQMR=59.9637;NS=94;NUMALT=1;ODDS=0.446693;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63359;QR=221999;RO=6225;RPL=1;RPP=3837.84;RPPR=13451;RPR=1769;RUN=1;SAF=0;SAP=3846.52;SAR=1770;SRF=2;SRP=13503.1;SRR=6223;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:25,19:25:896:19:680:-48.2838,0,-67.715	0/1:110:60,50:60:2156:50:1796:-128.798,0,-161.194	0/0:101:98,2:98:3491:2:72:0,-23.6261,-307.565	0/0:128:128,0:128:4582:0:0:0,-38.5318,-412.525	0/1:77:42,35:42:1482:35:1256:-90.1581,0,-110.494	0/1:156:72,84:72:2563:84:2986:-221.885,0,-183.959	0/0:77:77,0:77:2735:0:0:0,-23.1793,-246.393	0/0:171:169,2:169:6022:2:72:0,-44.6394,-535.249	0/1:91:47,44:47:1667:44:1571:-114.088,0,-122.923	0/1:91:33,58:33:1180:58:2079:-159.927,0,-79.1143	0/0:67:67,0:67:2362:0:0:0,-20.169,-212.832	0/0:62:62,0:62:2202:0:0:0,-18.6639,-198.338	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:59:29,30:29:1026:30:1080:-79.7433,0,-74.8906	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.945	0/0:67:67,0:67:2377:0:0:0,-20.169,-214.187	0/0:41:41,0:41:1454:0:0:0,-12.3422,-131.154	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:129:65,64:65:2306:64:2281:-166.671,0,-168.967	0/0:194:194,0:194:6918:0:0:0,-58.3998,-622.686	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.898	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/1:117:58,59:58:2064:59:2124:-156.199,0,-150.811	0/0:118:118,0:118:4179:0:0:0,-35.5215,-376.223	0/0:256:256,0:256:9131:0:0:0,-77.0637,-821.748	0/1:222:116,106:116:4143:106:3775:-272.552,0,-306.225	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:200:200,0:200:7150:0:0:0,-60.206,-643.557	0/0:107:107,0:107:3809:0:0:0,-32.2102,-343.007	0/0:87:86,1:86:3088:1:36:0,-22.5913,-274.549	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:17:6,11:6:216:11:396:-30.8606,0,-14.673	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:195:195,0:195:6921:0:0:0,-58.7008,-622.958	0/1:105:74,31:74:2626:31:1107:-68.3274,0,-204.979	0/1:45:25,20:25:888:20:720:-51.5824,0,-66.6927	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:92:57,35:57:2017:35:1260:-85.9969,0,-154.106	0/1:46:26,20:26:924:20:716:-50.9111,0,-69.6303	0/0:133:133,0:133:4721:0:0:0,-40.037,-425.049	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/1:50:25,25:25:900:25:900:-66.2264,0,-66.2695	0/1:129:53,76:53:1896:76:2732:-207.231,0,-132.085	0/0:104:104,0:104:3723:0:0:0,-31.3071,-335.271	0/0:170:168,2:168:5987:2:72:0,-44.3432,-532.104	0/0:94:94,0:94:3359:0:0:0,-28.2968,-302.44	0/1:119:63,56:63:2245:56:2012:-145.503,0,-166.489	0/1:168:90,78:90:3232:78:2778:-199.682,0,-240.528	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:65:29,36:29:1040:36:1283:-96.1975,0,-74.3474	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:58:57,1:57:2023:1:36:0,-13.8615,-178.744	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	1/1:5:0,5:0:0:5:180:-16.5381,-1.50515,0	0/1:24:13,11:13:468:11:396:-28.7165,0,-35.2349	0/0:84:83,1:83:2963:1:36:0,-21.6882,-263.305	0/0:88:88,0:88:3146:0:0:0,-26.4906,-283.364	0/1:11:3,8:3:108:8:288:-22.9283,0,-6.76384	0/0:151:151,0:151:5386:0:0:0,-45.4555,-484.872	0/1:172:86,86:86:3079:86:3086:-226.132,0,-225.547	0/1:84:43,41:43:1531:41:1472:-107.476,0,-112.796	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:130:130,0:130:4652:0:0:0,-39.1339,-418.838	0/1:107:27,80:27:972:80:2870:-225.667,0,-55.5877	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:63:18,45:18:648:45:1616:-126.729,0,-39.687	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/1:23:12,11:12:419:11:387:-28.2422,0,-31.119	0/1:62:28,34:28:999:34:1220:-91.4292,0,-71.5606	0/1:37:19,18:19:680:18:648:-47.5056,0,-50.3911	0/0:190:190,0:190:6770:0:0:0,-57.1957,-609.371	0/1:140:59,81:59:2103:81:2904:-219.437,0,-147.395	0/1:94:65,29:65:2331:29:1040:-65.609,0,-181.752	0/1:67:27,40:27:972:40:1428:-108.649,0,-67.6207	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2163	0/1:61:38,23:38:1342:23:828:-56.4542,0,-102.716	0/0:115:115,0:115:4102:0:0:0,-34.6184,-369.365	0/0:219:218,0:218:7791:0:0:0,-65.6245,-700.846	0/1:78:39,39:39:1400:39:1385:-101.425,0,-102.819	0/0:52:52,0:52:1846:0:0:0,-15.6536,-166.419	0/1:71:29,42:29:1040:42:1504:-114.246,0,-72.5412	0/1:123:59,64:59:2077:64:2295:-169.753,0,-149.942	0/1:51:21,30:21:756:30:1076:-81.7888,0,-53.0147	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.183	0/0:81:81,0:81:2886:0:0:0,-24.3834,-259.976	0/1:36:15,21:15:540:21:724:-54.6315,0,-38.0995	0/1:81:38,43:38:1342:43:1536:-114.142,0,-96.3245	0/1:76:17,59:17:604:59:2116:-167.802,0,-31.8123	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.57	0/0:95:95,0:95:3385:0:0:0,-28.5978,-304.865
chr01	35119848	.	C	T	426940	PASS	AB=0.788763;ABP=2361.94;AC=158;AF=0.840426;AN=188;AO=15229;CIGAR=1X;DP=16027;DPB=16027;DPRA=0;EPP=33072.4;EPPR=99.915;GTI=16;LEN=1;MEANALT=1.06383;MQM=59.966;MQMR=59.9609;NS=94;NUMALT=1;ODDS=4.20085;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=543276;QR=28291;RO=792;RPL=8538;RPP=489.436;RPPR=1578.33;RPR=6691;RUN=1;SAF=8538;SAP=489.436;SAR=6691;SRF=507;SRP=138.135;SRR=285;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:5,52:5:180:52:1859:-151.037,-0.606645,0	0/1:121:14,107:14:504:107:3817:-307.299,0,-9.27346	1/1:227:0,227:0:0:227:8090:-728.12,-68.3338,0	1/1:414:0,414:0:0:414:14776:-1329.35,-124.626,0	0/1:95:11,84:11:396:84:3000:-241.632,0,-7.3849	0/1:64:8,56:8:288:56:1993:-160.376,0,-7.00149	1/1:267:0,267:0:0:267:9510:-855.86,-80.375,0	1/1:329:0,329:0:0:329:11795:-1061.36,-99.0389,0	1/1:169:7,162:7:252:162:5773:-496.657,-27.8451,0	0/1:144:15,129:15:532:129:4583:-369.29,0,-4.86477	1/1:156:0,156:0:0:156:5564:-500.886,-46.9607,0	1/1:240:0,240:0:0:240:8576:-771.837,-72.2472,0	1/1:200:0,200:0:0:200:7134:-642.116,-60.206,0	0/1:159:30,129:30:1064:129:4620:-368.1,0,-48.2079	1/1:179:0,179:0:0:179:6398:-575.91,-53.8844,0	1/1:155:0,155:0:0:155:5542:-498.904,-46.6597,0	1/1:130:0,130:0:0:130:4615:-415.515,-39.1339,0	1/1:125:0,125:0:0:125:4448:-400.489,-37.6288,0	1/1:71:1,70:1:36:70:2508:-222.374,-17.7749,0	0/1:172:19,153:19:680:153:5459:-439.66,0,-9.752	1/1:348:0,348:0:0:348:12366:-1112.78,-104.758,0	1/1:187:1,186:1:27:186:6642:-595.151,-53.5928,0	1/1:239:0,239:0:0:239:8542:-768.773,-71.9462,0	1/1:144:12,132:12:424:132:4716:-386.101,-4.8519,0	1/1:196:1,195:1:36:195:6914:-618.729,-55.4036,0	1/1:590:0,590:0:0:590:21028:-1892,-177.608,0	1/1:278:18,260:18:648:260:9298:-778.127,-25.0345,0	1/1:91:0,91:0:0:91:3252:-292.902,-27.3937,0	1/1:580:0,580:0:0:580:20725:-1864.72,-174.597,0	1/1:259:2,257:2:72:257:9166:-817.918,-71.13,0	1/1:225:0,225:0:0:225:8033:-722.991,-67.7318,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:15:1,14:1:36:14:504:-42.0998,-0.917175,0	1/1:422:0,422:0:0:422:15014:-1350.99,-127.035,0	1/1:161:7,154:7:252:154:5462:-468.681,-25.4369,0	0/1:118:37,81:37:1328:81:2883:-224.185,0,-84.3007	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:155:20,135:20:712:135:4819:-387.204,0,-17.747	0/1:57:19,38:19:684:38:1359:-105.451,0,-44.7316	1/1:374:0,374:0:0:374:13373:-1203.34,-112.585,0	1/1:189:0,189:0:0:189:6755:-608.023,-56.8947,0	0/1:106:35,71:35:1233:71:2526:-195.45,0,-79.3629	0/1:105:15,90:15:532:90:3211:-257.605,0,-16.6049	1/1:202:0,202:0:0:202:7244:-652.011,-60.8081,0	1/1:354:0,354:0:0:354:12589:-1132.84,-106.565,0	1/1:241:0,241:0:0:241:8576:-771.834,-72.5482,0	0/1:197:20,177:20:716:177:6308:-508.51,0,-5.46481	0/1:158:17,141:17:608:141:5060:-407.981,0,-7.48928	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:114:6,107:6:216:107:3792:-321.689,-14.5857,0	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:275:0,275:0:0:275:9813:-883.029,-82.7833,0	1/1:97:0,97:0:0:97:3428:-308.735,-29.1999,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:20:4,16:4:144:16:568:-45.4313,0,-7.29302	1/1:200:0,200:0:0:200:7137:-642.341,-60.206,0	1/1:240:0,240:0:0:240:8522:-766.895,-72.2472,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:393:0,393:0:0:393:14007:-1260.13,-118.305,0	1/1:221:17,203:17:608:203:7266:-598.937,-11.5343,0	1/1:65:5,60:5:180:60:2151:-177.175,-3.01489,0	1/1:164:0,164:0:0:164:5830:-524.801,-49.3689,0	1/1:292:0,292:0:0:292:10431:-938.711,-87.9008,0	0/1:104:36,68:36:1288:68:2440:-188.548,0,-84.9158	1/1:140:4,136:4:144:136:4863:-424.51,-28.8306,0	0/1:125:15,110:15:536:110:3911:-314.552,0,-10.9461	1/1:162:0,162:0:0:162:5763:-518.787,-48.7669,0	1/1:29:1,28:1:36:28:1004:-87.0776,-5.1316,0	1/1:94:3,91:3:108:91:3267:-284.174,-18.2217,0	1/1:113:6,107:6:216:107:3814:-323.667,-14.2259,0	1/1:423:1,422:1:36:422:15055:-1351.08,-123.737,0	0/1:175:31,144:31:1103:144:5143:-410.331,0,-46.8996	1/1:113:7,106:7:252:106:3804:-319.528,-10.9874,0	0/1:94:18,76:18:640:76:2720:-216.743,0,-29.6325	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:106:18,88:18:644:88:3160:-252.71,0,-26.3814	1/1:220:0,220:0:0:220:7826:-704.37,-66.2266,0	1/1:378:1,377:1:36:377:13454:-1206.95,-110.191,0	0/1:141:45,95:45:1600:95:3388:-262.004,0,-101.787	1/1:157:0,157:0:0:157:5618:-505.696,-47.2617,0	0/1:160:61,98:61:2184:98:3478:-265.01,0,-148.603	0/1:250:83,166:83:2968:166:5914:-457.055,0,-191.547	0/1:46:10,36:10:360:36:1284:-102.016,0,-18.8969	1/1:192:0,192:0:0:192:6848:-616.391,-57.7978,0	1/1:194:1,192:1:36:192:6860:-613.87,-54.8603,0	0/1:83:17,66:17:612:66:2368:-188.393,0,-30.4279	0/1:162:31,131:31:1108:131:4644:-369.358,0,-51.2641	0/1:119:52,67:52:1856:67:2386:-179.174,0,-131.497	1/1:280:0,280:0:0:280:9984:-898.498,-84.2884,0	1/1:263:0,263:0:0:263:9406:-846.502,-79.1709,0
chr01	35121691	.	A	G	49687.4	PASS	AB=0.459702;ABP=72.1399;AC=46;AF=0.244681;AN=188;AO=2270;CIGAR=1X;DP=12693;DPB=12693;DPRA=0.819099;EPP=84.5735;EPPR=224.998;GTI=5;LEN=1;MEANALT=1.01923;MQM=50.3278;MQMR=59.4185;NS=94;NUMALT=1;ODDS=2.61196;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81302;QR=373342;RO=10418;RPL=989;RPP=84.5735;RPPR=224.998;RPR=1281;RUN=1;SAF=0;SAP=4932.25;SAR=2270;SRF=0;SRP=22625.4;SRR=10418;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:31,22:31:1112:22:792:-55.4174,0,-84.4358	0/1:239:125,114:125:4487:114:4078:-294.052,0,-331.814	0/0:196:196,0:196:7052:0:0:0,-59.0019,-633.707	0/0:401:400,0:400:14339:0:0:0,-120.412,-1289.46	0/1:117:70,47:70:2512:47:1688:-116.425,0,-191.103	0/1:127:79,48:79:2813:48:1702:-114.629,0,-215.178	0/0:234:234,0:234:8381:0:0:0,-70.441,-752.976	0/0:238:238,0:238:8533:0:0:0,-71.6451,-767.465	0/1:68:40,28:40:1440:28:1008:-70.3374,0,-109.428	0/1:153:84,69:84:3016:69:2462:-174.547,0,-225.585	0/0:54:53,1:53:1895:1:36:0,-12.6726,-166.832	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.266	0/0:111:110,1:110:3942:1:36:0,-29.8251,-351.104	0/1:80:46,34:46:1656:34:1212:-84.3213,0,-125.225	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.701	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.316	0/0:89:89,0:89:3183:0:0:0,-26.7917,-286.661	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.185	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0567	0/1:303:190,113:190:6827:113:4047:-270.78,0,-522.897	0/0:177:176,1:176:6301:1:36:0,-49.6958,-563.557	0/0:224:224,0:224:8008:0:0:0,-67.4307,-720.002	0/0:160:160,0:160:5740:0:0:0,-48.1648,-515.52	0/1:117:81,36:81:2878:36:1296:-81.0666,0,-223.084	0/0:111:111,0:111:3948:0:0:0,-33.4143,-354.895	0/0:444:444,0:444:15905:0:0:0,-133.657,-1430.7	0/1:214:103,111:103:3684:111:3961:-290.757,0,-267.27	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.649	0/0:392:392,0:392:14041:0:0:0,-118.004,-1262.34	0/0:402:400,2:400:14298:2:72:0,-114.2,-1279.09	0/0:255:255,0:255:9132:0:0:0,-76.7626,-821.401	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:16:11,5:11:396:5:180:-11.6839,0,-30.8458	0/1:6:3,3:3:108:3:108:-8.24366,0,-8.26899	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:7:0,7:0:0:7:252:-22.9711,-2.10721,0	0/0:216:216,0:216:7730:0:0:0,-65.0225,-695.52	0/1:226:116,110:116:4154:110:3943:-284.801,0,-305.93	0/1:58:34,24:34:1224:24:855:-59.4113,0,-92.9828	0/1:2:1,1:1:36:1:36:-2.98442,0,-2.99621	0/1:222:133,89:133:4765:89:3196:-219.159,0,-362.126	0/1:32:16,16:16:576:16:576:-42.371,0,-42.4554	0/0:196:195,0:195:7008:0:0:0,-58.7008,-630.514	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.128	0/1:63:35,28:35:1248:28:996:-70.5241,0,-93.6454	0/1:138:95,43:95:3400:43:1544:-96.7357,0,-264.505	0/0:161:160,0:160:5748:0:0:0,-48.1648,-516.772	0/0:274:272,2:272:9752:2:68:0,-76.0448,-870.619	0/0:253:253,0:253:9085:0:0:0,-76.1606,-817.441	0/1:168:79,88:79:2836:88:3164:-231.399,0,-204.825	0/1:232:107,125:107:3828:125:4466:-329.771,0,-274.825	0/1:6:4,2:4:144:2:68:-4.63123,0,-11.5074	0/1:214:124,90:124:4444:90:3231:-225.801,0,-335.411	0/0:125:125,0:125:4496:0:0:0,-37.6287,-404.314	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.9725	0/0:203:202,1:202:7218:1:36:0,-57.5226,-644.791	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.498	0/1:8:1,7:1:36:7:252:-20.4959,0,-1.19003	0/1:19:7,12:7:252:12:432:-32.1834,0,-17.2916	0/0:128:128,0:128:4585:0:0:0,-38.5318,-412.736	0/0:135:135,0:135:4843:0:0:0,-40.639,-435.782	0/1:4:2,2:2:72:2:72:-5.60367,0,-5.6326	0/0:298:297,0:297:10623:0:0:0,-89.4059,-954.479	0/1:242:106,136:106:3812:136:4859:-361.746,0,-270.329	0/1:60:34,26:34:1216:26:936:-66.2205,0,-90.6152	0/0:149:149,0:149:5325:0:0:0,-44.8535,-479.295	0/0:262:260,2:260:9321:2:72:0,-72.3821,-830.864	0/1:124:62,62:62:2224:62:2228:-162.307,0,-162.869	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:81:43,38:43:1536:38:1359:-97.6797,0,-114.055	0/0:62:62,0:62:2210:0:0:0,-18.6639,-199.154	0/1:42:18,24:18:644:24:853:-63.6773,0,-45.6469	0/1:174:90,84:90:3228:84:3000:-216.842,0,-238.305	0/1:72:44,28:44:1576:28:1004:-68.4975,0,-120.299	0/0:243:243,0:243:8719:0:0:0,-73.1503,-784.23	0/1:240:112,128:112:4009:128:4578:-337.834,0,-288.467	0/1:191:95,96:95:3416:96:3444:-251.876,0,-247.818	0/1:137:63,74:63:2248:74:2654:-196.672,0,-161.096	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.7711	0/1:115:53,62:53:1900:62:2222:-164.914,0,-136.617	0/0:176:176,0:176:6293:0:0:0,-52.9813,-566.325	0/0:311:311,0:311:11161:0:0:0,-93.6203,-1003.14	0/1:103:58,45:58:2088:45:1620:-114.396,0,-157.169	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.502	0/1:71:44,27:44:1580:27:968:-64.5842,0,-121.084	0/1:119:71,48:71:2556:48:1724:-118.767,0,-193.869	0/1:43:26,17:26:936:17:612:-41.9645,0,-71.607	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.695	0/0:86:86,0:86:3087:0:0:0,-25.8886,-278.038	0/1:33:17,16:17:608:16:572:-41.7173,0,-45.1073	0/1:92:57,35:57:2033:35:1260:-85.6063,0,-155.514	0/1:77:37,40:37:1332:40:1436:-105.519,0,-96.7613	0/0:179:179,0:179:6424:0:0:0,-53.8844,-577.984	0/0:111:111,0:111:3988:0:0:0,-33.4143,-358.665
chr01	35173981	.	C	A	22670.6	PASS	AB=0.498769;ABP=3.03703;AC=40;AF=0.217391;AN=184;AO=1016;CIGAR=1X;DP=5386;DPB=5386;DPRA=0.904947;EPP=2191.89;EPPR=9422.96;GTI=1;LEN=1;MEANALT=1.06977;MQM=59.9656;MQMR=59.989;NS=92;NUMALT=1;ODDS=1.66999;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36084;QR=155533;RO=4366;RPL=556;RPP=22.7074;RPPR=226.275;RPR=460;RUN=1;SAF=558;SAP=24.3831;SAR=458;SRF=2523;SRP=232.989;SRR=1843;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:17,7:17:599:7:244:-15.0747,0,-47.0134	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:151:150,1:150:5364:1:36:0,-41.8573,-479.292	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:82:82,0:82:2926:0:0:0,-24.6845,-263.574	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:30:18,12:18:631:12:417:-28.8293,0,-48.0848	0/1:74:45,28:45:1596:28:1000:-67.9805,0,-121.595	0/0:95:94,0:94:3345:0:0:0,-28.2968,-300.417	0/0:87:87,0:87:3077:0:0:0,-26.1896,-277.157	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818	0/1:52:27,25:27:968:25:892:-64.9461,0,-71.7838	0/0:127:127,0:127:4551:0:0:0,-38.2308,-409.755	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:26:26,0:26:902:0:0:0,-7.82678,-81.4903	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/1:89:52,37:52:1856:37:1308:-91.2298,0,-140.528	0/0:43:43,0:43:1511:0:0:0,-12.9443,-136.282	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/0:26:26,0:26:910:0:0:0,-7.82678,-82.2141	0/0:142:142,0:142:5019:0:0:0,-42.7463,-451.861	0/1:86:49,36:49:1755:36:1244:-86.1202,0,-132.267	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:177:177,0:177:6313:0:0:0,-53.2823,-568.263	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:99:99,0:99:3531:0:0:0,-29.802,-318	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:289:289,0:289:10284:0:0:0,-86.9977,-925.487	0/1:23:10,13:10:356:13:449:-33.8138,0,-25.4576	0/1:37:22,15:22:792:15:540:-37.7984,0,-60.4676	.:.:.:.:.:.:.:.	0/1:28:9,19:9:315:19:676:-52.7392,0,-20.2584	0/1:28:13,15:13:468:15:532:-39.7842,0,-34.0308	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:129:128,1:128:4570:1:21:0,-36.7329,-409.366	0/1:91:49,42:49:1749:42:1481:-106.189,0,-130.298	0/1:34:19,15:19:680:15:517:-36.6196,0,-51.2941	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:93:45,48:45:1595:48:1724:-127.45,0,-115.844	0/1:88:45,43:45:1597:43:1544:-112.762,0,-117.528	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:40:40,0:40:1411:0:0:0,-12.0412,-127.287	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:170:170,0:170:6069:0:0:0,-51.1751,-546.313	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.623	0/1:51:25,26:25:900:26:932:-68.8463,0,-65.9685	0/1:24:14,10:14:504:10:322:-22.0665,0,-38.4734	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:73:72,1:72:2556:1:32:0,-18.7759,-227.092	0/1:53:18,35:18:632:35:1241:-96.0379,0,-41.2522	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:16:9,7:9:311:7:252:-18.2125,0,-23.5072	0/0:108:108,0:108:3836:0:0:0,-32.5112,-345.437	0/1:26:12,14:12:420:14:504:-37.8713,0,-30.3072	0/1:46:37,9:37:1315:9:324:-15.6585,0,-104.804	0/1:36:21,15:21:752:15:528:-37.0143,0,-57.1692	0/0:52:52,0:52:1843:0:0:0,-15.6536,-166.15	0/1:109:46,63:46:1644:63:2256:-170.491,0,-115.436	0/1:11:3,8:3:108:8:283:-22.5009,0,-6.76384	0/1:19:5,14:5:176:14:490:-38.7109,0,-10.4654	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:21:11,10:11:387:10:360:-26.4227,0,-28.8443	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:119:119,0:119:4247:0:0:0,-35.8226,-382.41	0/1:142:66,76:66:2349:76:2724:-202.657,0,-168.921	0/0:110:110,0:110:3918:0:0:0,-33.1133,-352.811	0/1:131:68,63:68:2418:63:2252:-163.508,0,-178.44	0/1:220:97,123:97:3445:123:4379:-328.059,0,-244.037	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/0:53:53,0:53:1862:0:0:0,-15.9546,-167.855	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/1:52:20,32:20:716:32:1127:-86.0839,0,-49.1142	0/1:77:40,37:40:1427:37:1332:-97.0031,0,-105.547	0/1:124:45,78:45:1612:78:2765:-211.705,0,-107.984	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/0:202:202,0:202:7203:0:0:0,-60.8081,-648.325
chr01	35341979	.	T	C	240685	PASS	AB=0.464464;ABP=62.4282;AC=143;AF=0.760638;AN=188;AO=8951;CIGAR=1X;DP=11877;DPB=11877;DPRA=31.9167;EPP=19439.9;EPPR=6332.86;GTI=1;LEN=1;MEANALT=1.06452;MQM=59.815;MQMR=59.962;NS=94;NUMALT=1;ODDS=1.86333;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317068;QR=104052;RO=2919;RPL=4136;RPP=114.857;RPPR=49.1334;RPR=4815;RUN=1;SAF=4136;SAP=114.857;SAR=4815;SRF=1336;SRP=48.3955;SRR=1583;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:16,21:16:572:21:738:-55.5951,0,-40.6753	0/1:210:116,94:116:4130:94:3358:-239.219,0,-308.669	1/1:196:0,196:0:0:196:6933:-623.955,-59.0019,0	1/1:204:2,202:2:72:202:7122:-634.15,-54.5734,0	0/1:104:66,38:66:2367:38:1348:-90.3085,0,-181.976	0/1:88:53,35:53:1908:35:1237:-85.1352,0,-145.507	1/1:173:0,173:0:0:173:6089:-548.108,-52.0782,0	1/1:281:0,281:0:0:281:9904:-891.244,-84.5894,0	0/1:136:72,64:72:2565:64:2273:-163.874,0,-190.159	0/1:104:48,56:48:1688:56:1985:-147.595,0,-120.81	1/1:138:0,138:0:0:138:4887:-439.889,-41.5421,0	1/1:120:0,120:0:0:120:4279:-385.267,-36.1236,0	1/1:157:2,155:2:72:155:5554:-493.026,-40.425,0	0/1:166:89,77:89:3176:77:2735:-196.413,0,-236.094	1/1:133:0,133:0:0:133:4715:-424.511,-40.037,0	1/1:131:0,131:0:0:131:4645:-418.192,-39.4349,0	1/1:149:0,149:0:0:149:5292:-476.409,-44.8535,0	1/1:102:1,101:1:36:101:3601:-320.69,-27.1068,0	1/1:90:0,90:0:0:90:3208:-288.699,-27.0927,0	0/1:170:82,88:82:2931:88:3149:-232.46,0,-212.849	1/1:153:0,153:0:0:153:5421:-487.977,-46.0576,0	1/1:56:0,56:0:0:56:2007:-180.895,-16.8577,0	1/1:70:2,68:2:72:68:2404:-209.776,-14.2354,0	0/1:189:77,112:77:2738:112:3987:-302.103,0,-189.768	1/1:115:0,115:0:0:115:4095:-368.235,-34.6185,0	1/1:187:0,187:0:0:187:6587:-592.908,-56.2926,0	0/1:336:176,160:176:6256:160:5599:-402.884,0,-461.86	1/1:71:1,70:1:36:70:2443:-216.514,-17.7749,0	1/1:320:0,320:0:0:320:11280:-1015.09,-96.3296,0	1/1:112:0,112:0:0:112:3965:-356.948,-33.7154,0	1/1:146:0,146:0:0:146:5192:-467.415,-43.9504,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/1:29:18,11:18:648:11:396:-27.2529,0,-49.9165	0/1:6:3,3:3:104:3:99:-7.4304,0,-7.89663	1/1:15:0,15:0:0:15:521:-47.2163,-4.51545,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	1/1:317:2,314:2:72:314:11147:-996.227,-88.6495,0	0/1:173:92,81:92:3292:81:2854:-205.009,0,-244.421	0/1:156:82,74:82:2936:74:2656:-192.121,0,-217.514	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	1/1:136:1,135:1:36:135:4756:-424.591,-37.3418,0	0/1:86:44,42:44:1580:42:1477:-107.334,0,-116.603	1/1:152:0,151:0:0:151:5352:-481.437,-45.4555,0	1/1:80:1,79:1:36:79:2797:-248.34,-20.4841,0	0/1:97:52,45:52:1850:45:1591:-114.277,0,-137.351	0/1:86:48,38:48:1707:38:1342:-95.19,0,-128.027	1/1:124:0,124:0:0:124:4383:-394.635,-37.3277,0	1/1:119:0,119:0:0:119:4184:-376.74,-35.8226,0	1/1:97:0,97:0:0:97:3461:-311.688,-29.1999,0	0/1:155:85,70:85:3023:70:2508:-179.31,0,-225.639	0/1:168:94,73:94:3348:73:2599:-183.525,0,-250.907	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/1:154:74,80:74:2643:80:2848:-210.198,0,-191.758	1/1:51:0,51:0:0:51:1811:-163.211,-15.3525,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:149:2,147:2:72:147:5207:-461.432,-38.0167,0	1/1:51:0,51:0:0:51:1761:-158.736,-15.3525,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:32:17,15:17:608:15:540:-39.3036,0,-45.4191	1/1:99:0,99:0:0:99:3518:-316.812,-29.802,0	1/1:225:1,224:1:36:224:7916:-708.866,-64.1335,0	0/1:17:9,8:9:324:8:276:-20.0564,0,-24.3883	1/1:88:1,87:1:36:87:3109:-276.436,-22.8924,0	0/1:228:140,88:140:4980:88:3134:-213.648,0,-379.714	0/1:118:53,65:53:1889:65:2309:-172.543,0,-134.765	1/1:114:0,113:0:0:113:3994:-358.66,-34.0164,0	1/1:102:0,102:0:0:102:3590:-323.254,-30.7051,0	0/1:123:87,36:87:3099:36:1253:-76.039,0,-242.111	1/1:80:1,79:1:36:79:2821:-250.516,-20.4841,0	0/1:195:87,108:87:3101:108:3817:-285.026,0,-220.616	1/1:154:0,154:0:0:154:5489:-494.119,-46.3586,0	0/1:33:21,12:21:752:12:432:-29.2872,0,-58.0723	0/1:165:87,78:87:3082:78:2730:-196.271,0,-227.939	0/1:108:58,48:58:2062:48:1712:-122.097,0,-153.559	1/1:228:0,228:0:0:228:8101:-728.737,-68.6348,0	0/1:216:135,80:135:4812:80:2821:-189.005,0,-368.149	0/1:147:89,58:89:3187:58:2079:-143.082,0,-242.802	0/1:130:75,55:75:2661:55:1931:-134.931,0,-200.593	1/1:18:0,18:0:0:18:629:-56.9338,-5.41854,0	0/1:153:95,58:95:3387:58:2057:-139.342,0,-258.988	1/1:143:1,142:1:36:142:5013:-447.655,-39.449,0	1/1:192:0,192:0:0:192:6771:-609.461,-57.7978,0	0/1:166:86,80:86:3069:80:2843:-206.133,0,-226.466	1/1:110:0,110:0:0:110:3913:-352.227,-33.1133,0	0/1:161:80,81:80:2838:81:2846:-207.909,0,-207.193	0/1:197:89,108:89:3164:108:3820:-284.693,0,-225.681	0/1:72:38,34:38:1359:34:1169:-83.8302,0,-100.936	1/1:106:0,106:0:0:106:3749:-337.604,-31.9092,0	1/1:134:0,134:0:0:134:4759:-428.429,-40.338,0	0/1:151:77,74:77:2764:74:2647:-193.02,0,-203.546	0/1:206:99,107:99:3543:107:3808:-280.897,0,-257.058	0/1:108:67,41:67:2370:41:1465:-99.6321,0,-181.047	1/1:67:0,67:0:0:67:2343:-211.118,-20.169,0	1/1:180:0,180:0:0:180:6425:-578.326,-54.1854,0
chr01	35360455	.	A	G	107824	PASS	AB=0.413505;ABP=189.705;AC=142;AF=0.763441;AN=186;AO=5072;CIGAR=1X;DP=6778;DPB=6778;DPRA=18.4076;EPP=11016.7;EPPR=3701.03;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9278;MQMR=59.9125;NS=93;NUMALT=1;ODDS=2.18552;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181272;QR=60766;RO=1703;RPL=0;RPP=11016.7;RPPR=3701.03;RPR=5072;RUN=1;SAF=5072;SAP=11016.7;SAR=0;SRF=1703;SRP=3701.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:23,22:23:798:22:792:-58.0593,0,-58.5877	0/1:52:29,23:29:986:23:809:-57.4747,0,-73.3881	1/1:98:0,98:0:0:98:3524:-317.368,-29.5009,0	1/1:139:0,139:0:0:139:4966:-447.082,-41.8432,0	0/1:40:15,25:15:536:25:900:-69.2622,0,-36.5332	0/1:19:6,13:6:216:13:464:-36.3779,0,-14.0709	1/1:56:0,56:0:0:56:2016:-181.707,-16.8577,0	1/1:126:0,125:0:0:125:4469:-402.019,-37.6288,0	0/1:90:46,44:46:1652:44:1580:-115.399,0,-121.876	0/1:63:41,22:41:1461:22:773:-50.9246,0,-112.819	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:98:0,98:0:0:98:3515:-316.559,-29.5009,0	1/1:59:0,59:0:0:59:2108:-189.982,-17.7608,0	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3825	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:174:105,69:105:3772:69:2453:-168.639,0,-287.299	1/1:327:0,327:0:0:327:11659:-1048.81,-98.4368,0	1/1:58:0,58:0:0:58:2071:-186.659,-17.4597,0	1/1:55:0,55:0:0:55:1949:-175.683,-16.5567,0	0/1:48:29,19:29:1040:19:684:-47.4409,0,-79.4649	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:166:0,166:0:0:166:5953:-535.846,-49.971,0	0/1:263:185,78:185:6606:78:2804:-173.428,0,-515.447	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	1/1:144:2,142:2:72:142:5065:-449.158,-36.5116,0	1/1:61:0,61:0:0:61:2188:-197.157,-18.3628,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0186	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	1/1:165:0,165:0:0:165:5886:-529.763,-49.67,0	0/1:153:51,102:51:1813:102:3668:-284.264,0,-117.392	0/1:31:15,16:15:536:16:576:-42.8431,0,-39.2429	.:.:.:.:.:.:.:.	1/1:64:2,62:2:72:62:2186:-190.167,-12.4292,0	0/1:34:17,17:17:612:17:603:-44.3645,0,-45.1761	1/1:136:1,135:1:36:135:4837:-431.877,-37.3418,0	1/1:65:0,65:0:0:65:2313:-208.429,-19.567,0	0/1:50:30,20:30:1065:20:720:-50.0773,0,-81.1037	0/1:71:48,23:48:1724:23:809:-51.7552,0,-134.072	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:105:2,103:2:72:103:3681:-324.655,-24.7714,0	1/1:112:0,112:0:0:112:3989:-359.183,-33.7154,0	0/1:105:63,40:63:2260:40:1432:-97.8118,0,-172.252	0/1:84:59,25:59:2097:25:881:-54.3193,0,-163.711	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:118:82,36:82:2948:36:1292:-81.0622,0,-230.031	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:99:1,98:1:36:98:3515:-312.961,-26.2037,0	1/1:39:0,39:0:0:39:1393:-125.538,-11.7402,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.312	1/1:117:0,117:0:0:117:4164:-374.941,-35.2205,0	0/1:118:78,40:78:2769:40:1432:-93.6277,0,-213.901	0/1:60:39,21:39:1404:21:752:-49.9445,0,-108.597	1/1:54:0,54:0:0:54:1921:-173.165,-16.2556,0	1/1:304:4,300:4:144:300:10685:-947.811,-78.1995,0	0/1:160:126,34:126:4468:34:1224:-61.9314,0,-354.059	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:49:21,28:21:756:28:981:-73.8506,0,-53.6168	1/1:31:0,31:0:0:31:1112:-100.335,-9.33193,0	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:65:29,36:29:1044:36:1277:-95.6642,0,-74.7079	0/1:133:70,63:70:2486:63:2222:-160.204,0,-183.953	1/1:74:0,74:0:0:74:2616:-235.685,-22.2762,0	0/1:128:82,46:82:2918:46:1644:-109.712,0,-224.292	0/1:37:19,18:19:680:18:648:-47.5138,0,-50.3911	0/1:110:67,43:67:2400:43:1548:-106.129,0,-183.136	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:81:63,18:63:2241:18:644:-33.9072,0,-177.569	1/1:93:0,93:0:0:93:3302:-297.396,-27.9958,0	1/1:113:3,110:3:104:110:3952:-346.167,-24.3136,0	0/1:47:28,19:28:1008:19:669:-46.3855,0,-76.5169	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:51:23,28:23:824:28:1008:-75.6838,0,-59.1308	0/1:119:60,59:60:2156:59:2093:-152.445,0,-158.478	0/1:29:10,19:10:360:19:684:-53.1605,0,-24.0144	1/1:49:0,49:0:0:49:1730:-155.981,-14.7505,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:56:14,42:14:470:42:1493:-117.805,0,-25.7601	0/1:75:51,24:51:1824:24:860:-55.1446,0,-141.862	1/1:108:0,108:0:0:108:3880:-349.393,-32.5112,0	1/1:91:0,91:0:0:91:3276:-295.058,-27.3937,0
chr01	35360457	.	G	A	30486.5	PASS	AB=0.587569;ABP=196.966;AC=44;AF=0.236559;AN=186;AO=1732;CIGAR=1X;DP=6820;DPB=6820;DPRA=1.26816;EPP=3764;EPPR=11044.9;GTI=1;LEN=1;MEANALT=1.02;MQM=59.914;MQMR=59.9318;NS=93;NUMALT=1;ODDS=2.32619;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62082;QR=181955;RO=5085;RPL=0;RPP=3764;RPPR=11044.9;RPR=1732;RUN=1;SAF=1732;SAP=3764;SAR=0;SRF=5085;SRP=11044.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:22,23:22:788:23:828:-61.2978,0,-57.6984	0/1:53:23,30:23:824:30:1080:-81.5587,0,-58.5287	0/0:101:101,0:101:3605:0:0:0,-30.404,-324.655	0/0:140:139,0:139:4980:0:0:0,-41.8432,-447.983	0/1:43:26,17:26:928:17:612:-42.4687,0,-70.4578	0/1:19:13,6:13:464:6:216:-14.0709,0,-36.3779	0/0:56:56,0:56:1997:0:0:0,-16.8577,-179.996	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.607	0/1:95:47,48:47:1688:48:1724:-126.848,0,-123.609	0/1:64:22,42:22:792:42:1507:-116.659,0,-52.3398	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:98:98,0:98:3507:0:0:0,-29.5009,-315.84	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.827	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1277	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.231	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/1:179:69,110:69:2453:110:3929:-299.917,0,-167.109	0/0:325:324,1:324:11552:1:36:0,-94.2365,-1035.76	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.441	0/1:48:19,29:19:680:29:1044:-79.8254,0,-47.0797	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:165:165,0:165:5856:0:0:0,-49.6699,-527.149	0/1:269:81,188:81:2885:188:6719:-523.806,0,-178.908	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:142:140,2:140:5024:2:72:0,-35.9095,-445.468	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.642	0/0:58:58,0:58:2050:0:0:0,-17.4597,-184.768	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:17:8,9:8:284:9:320:-24.0186,0,-20.7858	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	0/0:166:166,0:166:5959:0:0:0,-49.971,-536.328	0/1:159:107,52:107:3840:52:1868:-120.535,0,-297.861	0/1:30:15,15:15:536:15:536:-39.5439,0,-39.5439	.:.:.:.:.:.:.:.	0/0:65:63,2:63:2241:2:72:0,-12.7302,-195.109	0/1:34:17,17:17:612:17:612:-45.1761,0,-45.1784	0/0:137:137,0:137:4882:0:0:0,-41.2411,-439.525	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:51:20,31:20:716:31:1116:-85.3946,0,-49.4152	0/1:71:23,48:23:824:48:1719:-133.622,0,-53.1102	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:105:102,3:102:3664:3:108:0,-21.533,-319.887	0/0:114:114,0:114:4077:0:0:0,-34.3174,-367.097	0/1:106:41,65:41:1468:65:2336:-178.545,0,-100.507	0/1:85:26,59:26:932:59:2105:-164.13,0,-58.6113	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:120:37,83:37:1328:83:2950:-229.608,0,-83.6986	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:99:97,2:97:3461:2:72:0,-22.9652,-304.865	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	1/1:4:0,4:0:0:4:144:-13.312,-1.20412,0	0/0:116:116,0:116:4168:0:0:0,-34.9195,-375.301	0/1:119:40,79:40:1432:79:2823:-218.456,0,-93.3266	0/1:59:20,39:20:705:39:1404:-108.899,0,-46.012	0/0:54:53,0:53:1893:0:0:0,-15.9546,-170.286	0/0:297:293,4:293:10505:4:144:0,-76.0923,-931.62	0/1:161:34,127:34:1224:127:4553:-361.432,0,-61.6304	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:49:28,21:28:989:21:752:-53.2558,0,-74.5715	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.933	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:65:36,29:36:1292:29:1029:-73.3542,0,-97.0168	0/1:133:63,70:63:2260:70:2520:-187.014,0,-163.626	0/0:77:77,0:77:2733:0:0:0,-23.1793,-246.212	0/1:130:45,84:45:1616:84:3012:-232.085,0,-106.533	0/1:37:18,19:18:636:19:680:-50.3911,0,-46.4299	0/1:109:42,67:42:1504:67:2400:-183.427,0,-102.842	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:81:18,63:18:640:63:2268:-179.999,0,-33.5459	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.662	0/0:115:112,3:112:3997:3:108:0,-24.5433,-349.844	0/1:48:19,29:19:669:29:1036:-78.7335,0,-46.0845	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:52:28,24:28:1008:24:864:-62.429,0,-75.3828	0/1:121:60,61:60:2144:61:2196:-161.474,0,-156.612	0/1:29:19,10:19:671:10:360:-24.0144,0,-51.9859	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/1:56:42,14:42:1508:14:504:-28.8404,0,-119.157	0/1:75:24,51:24:864:51:1836:-142.941,0,-55.5053	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/0:91:91,0:91:3276:0:0:0,-27.3937,-295.058
chr01	35360476	.	T	C	108225	PASS	AB=0.417017;ABP=173.836;AC=142;AF=0.763441;AN=186;AO=5065;CIGAR=1X;DP=6751;DPB=6751;DPRA=18.3342;EPP=10897.5;EPPR=3616.47;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9289;MQMR=59.9347;NS=93;NUMALT=1;ODDS=3.24336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180753;QR=60257;RO=1684;RPL=12;RPP=10897.5;RPPR=3616.47;RPR=5053;RUN=1;SAF=5065;SAP=11001.5;SAR=0;SRF=1684;SRP=3659.77;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:22,23:22:792:23:813:-59.9143,0,-58.0593	0/1:52:29,23:29:1031:23:815:-58.0172,0,-77.4491	1/1:99:0,98:0:0:98:3498:-314.671,-29.5009,0	1/1:138:0,138:0:0:138:4944:-445.105,-41.5421,0	0/1:41:15,26:15:522:26:932:-71.4205,0,-34.9646	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	1/1:56:0,56:0:0:56:2003:-180.537,-16.8577,0	1/1:125:0,125:0:0:125:4466:-402.109,-37.6288,0	0/1:92:45,47:45:1612:47:1688:-124.512,0,-117.675	0/1:62:41,21:41:1468:21:748:-48.9814,0,-113.752	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:98:0,98:0:0:98:3485:-313.861,-29.5009,0	1/1:58:0,58:0:0:58:2075:-187.017,-17.4597,0	0/1:31:18,13:18:640:13:468:-33.1277,0,-48.5974	1/1:57:0,57:0:0:57:2044:-184.231,-17.1587,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:20:0,20:0:0:20:699:-63.2325,-6.0206,0	0/1:174:105,69:105:3741:69:2453:-168.639,0,-284.511	1/1:323:0,323:0:0:323:11504:-1035.18,-97.2327,0	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:55:0,55:0:0:55:1947:-175.477,-16.5567,0	0/1:46:27,19:27:972:19:684:-48.0429,0,-73.9505	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	1/1:163:0,163:0:0:163:5806:-522.652,-49.0679,0	0/1:267:187,80:187:6694:80:2864:-177.622,0,-522.16	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:143:2,141:2:72:141:5033:-446.279,-36.2106,0	1/1:63:0,63:0:0:63:2252:-202.913,-18.9649,0	1/1:59:0,59:0:0:59:2085:-187.919,-17.7608,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3821	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:16:8,8:8:273:8:288:-21.4509,0,-20.0837	1/1:170:0,170:0:0:170:6078:-547.035,-51.1751,0	0/1:155:49,106:49:1760:106:3758:-291.692,0,-112.024	0/1:31:15,16:15:540:16:572:-42.4815,0,-39.6046	.:.:.:.:.:.:.:.	1/1:64:2,62:2:72:62:2191:-190.617,-12.4292,0	0/1:33:16,17:16:576:17:597:-44.1221,0,-42.2386	1/1:135:0,135:0:0:135:4826:-434.489,-40.6391,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	0/1:49:30,19:30:1076:19:684:-47.1399,0,-82.3978	0/1:70:47,23:47:1684:23:812:-52.3288,0,-130.775	1/1:67:0,67:0:0:67:2387:-215.087,-20.169,0	1/1:106:2,104:2:72:104:3703:-326.635,-25.0725,0	1/1:114:0,114:0:0:114:4068:-366.291,-34.3174,0	0/1:106:65,41:65:2319:41:1464:-100.147,0,-177.016	0/1:81:56,25:56:2008:25:887:-55.7647,0,-156.61	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:116:80,36:80:2872:36:1292:-81.6643,0,-223.797	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:99:2,97:2:68:97:3433:-302.727,-23.3443,0	1/1:40:0,40:0:0:40:1428:-128.789,-12.0412,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	1/1:87:0,87:0:0:87:3111:-280.217,-26.1896,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.312	1/1:115:0,115:0:0:115:4105:-369.635,-34.6185,0	0/1:113:74,39:74:2643:39:1400:-92.2544,0,-204.1	0/1:59:38,21:38:1364:21:748:-49.8845,0,-105.3	1/1:51:0,51:0:0:51:1827:-164.71,-15.3525,0	1/1:301:4,296:4:144:296:10535:-934.325,-77.3552,0	0/1:157:124,33:124:4432:33:1188:-59.9669,0,-351.725	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:47:21,26:21:752:26:936:-70.4111,0,-53.8578	1/1:32:0,32:0:0:32:1148:-103.573,-9.63296,0	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:64:29,35:29:1027:35:1252:-93.7192,0,-73.4763	0/1:130:68,62:68:2429:62:2208:-159.851,0,-179.73	1/1:73:0,73:0:0:73:2599:-234.159,-21.9752,0	0/1:128:84,44:84:3015:44:1580:-103.96,0,-233.015	0/1:36:19,17:19:676:17:612:-44.5764,0,-50.3309	0/1:109:66,43:66:2372:43:1525:-104.599,0,-180.908	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:80:62,18:62:2208:18:648:-34.5695,0,-174.9	1/1:92:0,92:0:0:92:3258:-293.442,-27.6948,0	1/1:112:3,109:3:108:109:3887:-339.95,-23.6402,0	0/1:45:26,19:26:928:19:676:-47.6216,0,-70.2919	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	0/1:52:24,28:24:864:28:1008:-75.3828,0,-62.429	0/1:121:61,60:61:2192:60:2144:-156.433,0,-161.115	0/1:29:10,19:10:360:19:680:-52.7993,0,-24.0144	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:55:13,42:13:468:42:1508:-119.458,0,-25.903	0/1:75:51,24:51:1827:24:856:-54.7839,0,-142.131	1/1:108:0,108:0:0:108:3855:-347.147,-32.5112,0	1/1:90:0,90:0:0:90:3215:-289.572,-27.0927,0
chr01	35360493	.	G	A	29891.9	PASS	AB=0.585967;ABP=187.819;AC=44;AF=0.236559;AN=186;AO=1710;CIGAR=1X;DP=6782;DPB=6782;DPRA=1.11248;EPP=3716.23;EPPR=11001.5;GTI=1;LEN=1;MEANALT=1;MQM=59.9129;MQMR=59.9288;NS=93;NUMALT=1;ODDS=2.76566;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61122;QR=180056;RO=5069;RPL=1710;RPP=3716.23;RPPR=11001.5;RPR=0;RUN=1;SAF=1710;SAP=3716.23;SAR=0;SRF=5069;SRP=11010.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:23,23:23:807:23:820:-60.2751,0,-59.0981	0/1:53:24,29:24:845:29:1032:-77.2389,0,-60.4125	0/0:100:100,0:100:3541:0:0:0,-30.103,-318.898	0/0:135:135,0:135:4803:0:0:0,-40.639,-432.421	0/1:42:26,16:26:893:16:572:-39.1698,0,-67.5884	0/1:19:13,6:13:464:6:216:-14.0709,0,-36.3779	0/0:56:55,0:55:1960:0:0:0,-16.5566,-176.31	0/0:126:126,0:126:4452:0:0:0,-37.9298,-400.854	0/1:94:47,47:47:1654:47:1677:-122.919,0,-120.847	0/1:62:21,41:21:743:41:1467:-113.661,0,-48.5295	0/0:26:25,0:25:900:0:0:0,-7.52575,-80.9612	0/0:99:98,0:98:3450:0:0:0,-29.5009,-310.443	0/0:59:59,0:59:2099:0:0:0,-17.7608,-189.177	0/1:30:13,17:13:464:17:600:-45.2983,0,-33.0666	0/0:57:57,0:57:1992:0:0:0,-17.1587,-179.551	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/1:176:69,107:69:2443:107:3816:-290.655,0,-167.128	0/0:326:326,0:326:11587:0:0:0,-98.1358,-1042.52	0/0:58:58,0:58:2070:0:0:0,-17.4597,-186.569	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.128	0/1:47:18,29:18:636:29:1029:-78.7727,0,-43.4196	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.169	0/0:165:165,0:165:5877:0:0:0,-49.6699,-529.014	0/1:265:78,187:78:2774:187:6716:-524.739,0,-170.128	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:145:143,2:143:5091:2:72:0,-36.8126,-451.497	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.831	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:17:8,9:8:288:9:324:-24.3821,0,-21.1499	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	0/0:165:165,0:165:5826:0:0:0,-49.6699,-524.37	0/1:159:107,52:107:3817:52:1855:-119.365,0,-295.705	0/1:30:15,15:15:540:15:532:-39.1822,0,-39.9056	.:.:.:.:.:.:.:.	0/0:62:60,2:60:2131:2:72:0,-11.8271,-185.219	0/1:34:17,17:17:603:17:612:-45.1761,0,-44.3645	0/0:137:136,1:136:4861:1:36:0,-37.6428,-434.038	0/0:63:63,0:63:2207:0:0:0,-18.9649,-198.893	0/1:50:20,30:20:682:30:1072:-81.7363,0,-46.6432	0/1:69:23,46:23:816:46:1644:-127.477,0,-52.9906	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/0:107:105,2:105:3738:2:72:0,-25.3735,-329.784	0/0:114:114,0:114:4058:0:0:0,-34.3174,-365.39	0/1:104:40,64:40:1440:64:2300:-175.909,0,-98.5906	0/1:84:25,59:25:892:59:2124:-166.142,0,-55.3132	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:119:37,82:37:1313:82:2940:-229.011,0,-82.6471	0/0:47:47,0:47:1651:0:0:0,-14.1484,-148.874	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:98:96,2:96:3426:2:68:0,-23.0432,-302.095	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:40:40,0:40:1411:0:0:0,-12.0412,-127.287	0/0:84:84,0:84:2979:0:0:0,-25.2865,-268.341	1/1:4:0,4:0:0:4:144:-13.312,-1.20412,0	0/0:118:118,0:118:4188:0:0:0,-35.5215,-377.103	0/1:119:40,79:40:1436:79:2815:-217.755,0,-93.6867	0/1:60:21,39:21:737:39:1387:-107.066,0,-48.5888	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/0:301:297,4:297:10553:4:140:0,-77.6654,-936.316	0/1:161:34,127:34:1215:127:4543:-360.508,0,-60.8191	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/1:48:27,21:27:972:21:747:-53.1049,0,-73.3485	0/0:32:30,2:30:1072:2:72:0,-2.85602,-90.0155	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:64:35,29:35:1260:29:1044:-75.0089,0,-94.4396	0/1:133:64,69:64:2272:69:2472:-182.697,0,-164.703	0/0:77:77,0:77:2715:0:0:0,-23.1793,-244.593	0/1:128:44,84:44:1576:84:2989:-230.679,0,-103.595	0/1:36:18,18:18:631:18:644:-47.4535,0,-46.2786	0/1:108:43,65:43:1544:65:2322:-176.71,0,-106.371	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:81:19,62:19:684:62:2220:-175.681,0,-37.5069	0/0:93:93,0:93:3301:0:0:0,-27.9958,-297.308	0/0:113:110,3:110:3892:3:108:0,-23.9412,-340.398	0/1:44:18,26:18:639:26:920:-69.8717,0,-44.5929	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/1:52:28,24:28:991:24:852:-61.3468,0,-73.85	0/1:119:58,61:58:2036:61:2188:-161.357,0,-147.617	0/1:29:19,10:19:684:10:360:-24.0144,0,-53.1605	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/0:64:64,0:64:2274:0:0:0,-19.2659,-204.921	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:56:42,14:42:1477:14:491:-27.6634,0,-116.365	0/1:72:23,49:23:824:49:1740:-135.208,0,-52.8092	0/0:108:108,0:108:3849:0:0:0,-32.5112,-346.606	0/0:91:90,1:90:3200:1:36:0,-23.7955,-284.623
chr01	35384082	.	TGGTA	CGGTA	160777	PASS	AB=0.463675;ABP=54.5974;AC=143;AF=0.768817;AN=186;AO=7564;CIGAR=1X4M;DP=10029;DPB=10029;DPRA=54.4946;EPP=16410.7;EPPR=5192.89;GTI=1;LEN=1;MEANALT=1.5;MQM=59.9937;MQMR=59.9988;NS=93;NUMALT=1;ODDS=0.392722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=270379;QR=84755;RO=2406;RPL=2;RPP=16410.7;RPPR=5192.89;RPR=7562;RUN=1;SAF=7564;SAP=16428;SAR=0;SRF=2406;SRP=5227.57;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:21,16:21:733:16:568:-40.3138,0,-55.1533	0/1:167:84,81:84:2969:81:2889:-210.245,0,-217.444	1/1:153:0,148:0:0:148:5290:-475.883,-44.5524,0	1/1:160:2,158:2:63:158:5632:-501.02,-42.1816,0	0/1:80:43,35:43:1541:35:1239:-87.9738,0,-115.144	0/1:97:58,36:58:2059:36:1288:-87.5702,0,-156.927	1/1:95:0,90:0:0:90:3216:-289.315,-27.0927,0	1/1:355:0,353:0:0:353:12608:-1134.27,-106.264,0	0/1:80:45,35:45:1592:35:1256:-89.2629,0,-119.488	0/1:237:123,114:123:4297:114:4056:-293.883,0,-315.568	1/1:81:0,81:0:0:81:2886:-259.976,-24.3834,0	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	0/1:93:49,44:49:1742:44:1580:-114.496,0,-129.069	1/1:65:0,65:0:0:65:2323:-209.33,-19.567,0	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	1/1:80:0,80:0:0:80:2849:-256.647,-24.0824,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	1/1:56:0,56:0:0:56:2003:-180.536,-16.8577,0	0/1:168:93,75:93:3258:75:2688:-191.592,0,-242.872	1/1:135:0,135:0:0:135:4800:-432.157,-40.6391,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:62:33,28:33:1171:28:1008:-72.3715,0,-87.0337	1/1:35:0,35:0:0:35:1256:-113.343,-10.5361,0	1/1:509:1,503:1:30:503:17982:-1615.01,-149.015,0	0/1:156:73,82:73:2563:82:2940:-217.814,0,-183.902	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:144:0,143:0:0:143:5099:-458.695,-43.0473,0	1/1:216:0,211:0:0:211:7515:-676.093,-63.5173,0	1/1:108:0,108:0:0:108:3859:-347.505,-32.5112,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:8:5,3:5:177:3:108:-7.66693,0,-13.8687	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:188:0,188:0:0:188:6748:-607.392,-56.5936,0	0/1:345:172,171:172:6043:171:6115:-446.833,0,-440.371	0/1:86:37,48:37:1302:48:1724:-129.498,0,-91.5329	0/1:4:1,3:1:35:3:108:-8.87105,0,-2.29451	1/1:92:2,89:2:71:89:3200:-281.511,-20.9433,0	0/1:46:23,23:23:803:23:815:-59.8234,0,-58.7394	1/1:119:0,119:0:0:119:4235:-381.331,-35.8226,0	1/1:67:0,67:0:0:67:2395:-215.806,-20.169,0	0/1:58:26,31:26:912:31:1104:-82.1522,0,-64.8777	0/1:138:66,71:66:2287:71:2543:-187.667,0,-164.635	1/1:121:1,120:1:36:120:4286:-382.319,-32.8264,0	1/1:156:0,156:0:0:156:5554:-499.985,-46.9607,0	1/1:132:0,132:0:0:132:4728:-425.679,-39.736,0	0/1:161:73,87:73:2564:87:3128:-233.221,0,-182.487	0/1:146:77,69:77:2719:69:2472:-178.783,0,-201.006	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:140:83,57:83:2931:57:2052:-142.807,0,-221.884	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	1/1:17:1,16:1:33:16:572:-48.5143,-1.81838,0	1/1:116:0,116:0:0:116:4137:-372.514,-34.9195,0	1/1:24:1,23:1:35:23:824:-70.9847,-3.72609,0	.:.:.:.:.:.:.:.	0/1:18:11,7:11:384:7:252:-17.6104,0,-29.4762	1/1:101:0,99:0:0:99:3545:-318.942,-29.802,0	1/1:130:2,128:2:72:128:4572:-404.81,-32.2972,0	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	1/1:190:0,190:0:0:190:6812:-613.15,-57.1957,0	0/1:265:142,121:142:5014:121:4319:-309.43,0,-371.958	0/1:86:49,35:49:1736:35:1260:-88.0674,0,-130.897	1/1:75:0,75:0:0:75:2672:-240.724,-22.5773,0	1/1:239:3,232:3:108:232:8298:-736.78,-61.0042,0	0/1:236:161,75:161:5678:75:2692:-171.481,0,-440.104	1/1:48:1,47:1:31:47:1680:-148.388,-11.35,0	0/1:115:48,67:48:1661:67:2384:-180.2,0,-115.156	1/1:147:0,147:0:0:147:5255:-473.086,-44.2514,0	0/1:44:19,24:19:669:24:860:-64.4178,0,-47.2324	0/1:130:60,69:60:2099:69:2452:-181.742,0,-149.987	0/1:86:44,40:44:1564:40:1432:-103.584,0,-115.457	1/1:233:1,232:1:36:232:8302:-743.589,-66.5417,0	0/1:138:80,58:80:2783:58:2072:-145.209,0,-209.17	0/1:156:104,52:104:3673:52:1868:-121.439,0,-283.816	0/1:130:78,52:78:2767:52:1864:-128.906,0,-210.138	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:114:63,51:63:2230:51:1819:-129.673,0,-166.648	1/1:78:0,78:0:0:78:2800:-252.239,-23.4803,0	1/1:195:0,193:0:0:193:6894:-620.169,-58.0988,0	0/1:121:60,61:60:2109:61:2180:-160.042,0,-153.653	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:75:40,35:40:1413:35:1256:-90.768,0,-104.89	0/1:137:63,74:63:2231:74:2660:-198.404,0,-159.814	0/1:67:37,29:37:1317:29:1040:-73.6866,0,-98.6037	1/1:82:0,81:0:0:81:2904:-261.236,-24.3834,0	1/1:44:1,43:1:35:43:1535:-134.944,-9.74669,0	0/1:83:46,37:46:1644:37:1328:-94.8367,0,-123.263	0/1:134:58,75:58:2045:75:2649:-198.26,0,-143.924	0/1:51:38,12:38:1346:12:432:-23.8099,0,-106.028	1/1:92:0,92:0:0:92:3258:-293.436,-27.6948,0	1/1:93:0,93:0:0:93:3327:-299.647,-27.9958,0
chr01	35384209	.	A	G	32848.6	PASS	AB=0.563478;ABP=123.759;AC=43;AF=0.231183;AN=186;AO=1956;CIGAR=1X;DP=7710;DPB=7710;DPRA=1.20454;EPP=4241.73;EPPR=12489;GTI=0;LEN=1;MEANALT=1.01852;MQM=59.9969;MQMR=59.9918;NS=93;NUMALT=1;ODDS=0.341984;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68532;QR=205685;RO=5750;RPL=1;RPP=4241.73;RPPR=12489;RPR=1955;RUN=1;SAF=0;SAP=4250.41;SAR=1956;SRF=0;SRP=12489;SRR=5750;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:17,24:17:612:24:830:-62.6718,0,-43.0712	0/1:94:41,53:41:1476:53:1883:-141.452,0,-104.839	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:107:107,0:107:3817:0:0:0,-32.2102,-343.727	0/1:62:34,28:34:1216:28:972:-69.1253,0,-91.0827	0/1:45:15,30:15:540:30:1048:-81.081,0,-35.3902	0/0:132:132,0:132:4708:0:0:0,-39.736,-423.879	0/0:50:49,1:49:1751:1:36:0,-11.4532,-154.275	0/1:76:42,34:42:1499:34:1190:-84.5252,0,-112.326	0/1:65:21,44:21:756:44:1540:-119.322,0,-48.8003	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:83:83,0:83:2945:0:0:0,-24.9855,-265.281	0/0:73:73,0:73:2594:0:0:0,-21.9752,-233.708	0/1:49:32,17:32:1152:17:597:-39.3057,0,-89.2397	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.451	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:44:44,0:44:1558:0:0:0,-13.2453,-140.51	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:191:86,105:86:3088:105:3708:-276.426,0,-220.651	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:178:177,1:177:6339:1:36:0,-49.9851,-567.002	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.217	0/1:141:71,69:71:2552:69:2450:-178.25,0,-187.426	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:220:218,2:218:7791:2:68:0,-59.7689,-694.764	0/1:239:83,156:83:2967:156:5434:-417.252,0,-195.316	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:148:147,1:147:5276:1:36:0,-40.9542,-471.376	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:86:85,1:85:3023:1:36:0,-22.2903,-268.703	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:9:1,8:1:36:8:280:-22.83,0,-0.889005	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:10:8,2:8:270:2:68:-3.44741,0,-21.6174	0/0:232:232,0:232:8316:0:0:0,-69.839,-748.016	0/1:206:89,117:89:3196:117:4094:-306.636,0,-225.721	0/1:62:27,35:27:953:35:1233:-92.6082,0,-67.4195	.:.:.:.:.:.:.:.	0/0:122:121,1:121:4340:1:32:0,-33.5263,-387.575	0/1:26:12,14:12:432:14:496:-37.1475,0,-31.3944	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.497	0/0:69:69,0:69:2452:0:0:0,-20.7711,-220.933	0/1:60:31,29:31:1108:29:1021:-74.1393,0,-81.9692	0/1:146:60,86:60:2152:86:3035:-229.43,0,-149.997	0/0:62:61,1:61:2178:1:36:0,-15.0656,-192.687	0/0:124:123,1:123:4416:1:36:0,-33.7294,-394.012	0/0:128:127,1:127:4530:1:36:0,-34.9336,-404.267	0/1:118:47,71:47:1692:71:2508:-190.453,0,-117.045	0/1:201:94,107:94:3380:107:3772:-279.175,0,-243.907	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:88:44,44:44:1584:44:1550:-113.298,0,-116.361	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:54:53,0:53:1908:0:0:0,-15.9546,-171.785	0/1:6:3,3:3:104:3:104:-7.89663,0,-7.89663	0/1:13:6,7:6:207:7:252:-19.1156,0,-15.0535	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:120:120,0:120:4283:0:0:0,-36.1236,-385.646	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:181:181,0:181:6421:0:0:0,-54.4864,-577.978	0/1:118:41,77:41:1472:77:2696:-207.357,0,-97.2546	0/1:40:18,22:18:644:22:771:-57.6691,0,-46.2494	0/0:68:68,0:68:2410:0:0:0,-20.47,-217.156	0/0:157:156,1:156:5582:1:36:0,-43.6634,-498.904	0/1:72:22,50:22:788:50:1764:-137.367,0,-49.5706	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:58:33,25:33:1179:25:887:-62.6884,0,-88.9575	0/0:77:77,0:77:2759:0:0:0,-23.1793,-248.551	0/1:22:15,7:15:532:7:252:-16.4063,0,-41.5904	0/1:147:60,87:60:2148:87:3023:-228.049,0,-149.336	0/1:101:46,55:46:1648:55:1911:-141.858,0,-118.205	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/1:143:67,76:67:2390:76:2687:-199.029,0,-172.309	0/1:93:38,55:38:1360:55:1919:-144.988,0,-94.7048	0/1:62:26,36:26:936:36:1272:-96.119,0,-65.8956	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:102:35,67:35:1248:67:2331:-179.341,0,-81.9198	0/0:90:89,0:89:3200:0:0:0,-26.7917,-287.862	0/0:136:135,0:135:4815:0:0:0,-40.639,-433.144	0/1:122:64,58:64:2300:58:2007:-144.173,0,-170.535	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:67:29,38:29:1040:38:1332:-100.008,0,-73.7454	0/1:124:62,62:62:2219:62:2110:-152.83,0,-162.646	0/1:40:15,25:15:531:25:869:-66.4827,0,-36.0807	0/0:95:94,1:94:3371:1:36:0,-24.9996,-300.007	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.639	0/1:15:4,11:4:144:11:377:-29.7425,0,-8.79817	0/1:85:29,56:29:1040:56:1961:-151.176,0,-68.3268	0/1:71:25,46:25:900:46:1586:-121.65,0,-59.9479	0/0:90:90,0:90:3218:0:0:0,-27.0927,-289.841	0/0:98:98,0:98:3511:0:0:0,-29.5009,-316.199
chr01	35430819	.	C	T	22745.4	PASS	AB=0.550833;ABP=56.8773;AC=44;AF=0.236559;AN=186;AO=1333;CIGAR=1X;DP=5212;DPB=5212;DPRA=1.25469;EPP=2897.58;EPPR=8421.81;GTI=1;LEN=1;MEANALT=1.02128;MQM=60;MQMR=59.9948;NS=93;NUMALT=1;ODDS=2.19031;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47491;QR=137826;RO=3877;RPL=1333;RPP=2897.58;RPPR=8421.81;RPR=0;RUN=1;SAF=1333;SAP=2897.58;SAR=0;SRF=3877;SRP=8421.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:12,11:12:424:11:392:-28.6964,0,-31.5727	0/1:74:24,50:24:856:50:1780:-138.207,0,-55.0849	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:28:18,10:18:633:10:360:-24.3155,0,-48.8662	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.809	0/1:27:19,8:19:676:8:280:-17.4115,0,-53.0402	0/1:74:38,36:38:1360:36:1287:-93.8566,0,-100.424	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:79:43,36:43:1532:36:1275:-91.2709,0,-114.392	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.6	0/0:101:101,0:101:3596:0:0:0,-30.404,-323.848	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:92:24,68:24:864:68:2428:-191.081,0,-50.3878	0/0:64:63,0:63:2217:0:0:0,-18.9649,-199.431	0/0:50:50,0:50:1763:0:0:0,-15.0515,-158.953	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:66:37,29:37:1316:29:1044:-74.4068,0,-98.8738	0/0:37:37,0:37:1293:0:0:0,-11.1381,-116.669	0/0:223:221,2:221:7837:2:72:0,-60.293,-698.527	0/1:31:9,22:9:315:22:792:-62.2737,0,-19.3553	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:110:109,1:109:3873:1:36:0,-29.515,-345.167	0/0:90:90,0:90:3205:0:0:0,-27.0927,-288.672	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:144:144,0:144:5098:0:0:0,-43.3483,-458.966	0/1:225:123,101:123:4370:101:3598:-256.234,0,-325.686	0/1:58:20,38:20:720:38:1356:-104.881,0,-47.669	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/0:62:59,3:59:2080:3:108:0,-8.58869,-177.393	0/0:45:45,0:45:1567:0:0:0,-13.5463,-141.317	0/1:55:31,24:31:1099:24:852:-60.4437,0,-82.6628	0/1:59:33,26:33:1180:26:928:-66.0775,0,-88.7473	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:124:124,0:124:4419:0:0:0,-37.3277,-397.883	0/0:60:60,0:60:2119:0:0:0,-18.0618,-190.979	0/1:57:24,33:24:847:33:1180:-89.3493,0,-59.39	0/1:96:40,56:40:1416:56:1970:-148.673,0,-98.8385	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:98:38,60:38:1360:60:2144:-163.727,0,-93.1997	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	.:.:.:.:.:.:.:.	0/1:17:14,3:14:489:3:108:-4.95766,0,-39.2214	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/0:129:128,1:128:4576:1:36:0,-35.2346,-408.408	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/1:180:80,100:80:2834:100:3558:-266.242,0,-201.114	0/1:61:21,40:21:748:40:1423:-110.004,0,-49.2825	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:76:76,0:76:2689:0:0:0,-22.8783,-242.254	0/1:76:12,64:12:420:64:2291:-183.572,0,-15.2557	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:28:11,17:11:396:17:608:-46.6232,0,-27.5539	0/0:110:110,0:110:3865:0:0:0,-33.1133,-348.038	0/1:8:1,7:1:36:7:244:-19.8912,0,-1.19003	0/1:18:5,13:5:172:13:464:-36.679,0,-10.3994	0/1:33:20,13:20:704:13:468:-32.5257,0,-53.7505	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:78:36,42:36:1292:42:1500:-111.814,0,-93.1034	0/1:77:35,42:35:1248:42:1504:-112.475,0,-89.4456	0/1:63:16,47:16:572:47:1668:-131.442,0,-32.8485	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:59:21,38:21:733:38:1356:-104.58,0,-48.5289	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/0:140:140,0:140:4923:0:0:0,-42.1442,-443.222	0/1:109:63,46:63:2237:46:1630:-114.175,0,-168.78	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/1:41:27,14:27:946:14:500:-32.9939,0,-73.1106	0/1:103:52,51:52:1868:51:1794:-130.733,0,-137.393	0/1:39:16,23:16:568:23:816:-62.0215,0,-39.7117	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:38:18,20:18:648:20:712:-52.9675,0,-47.2127	0/1:98:37,61:37:1328:61:2188:-167.685,0,-90.3213	0/1:48:13,35:13:468:35:1233:-96.8224,0,-28.0102	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.666	0/0:87:87,0:87:3085:0:0:0,-26.1896,-277.878
chr01	35430916	.	ACCCT	ACCCC,ACCCA	96490.6	PASS	AB=0.453425,0.540639;ABP=44.2742,34.4263;AC=143,45;AF=0.760638,0.239362;AN=188;AO=4368,1204;CIGAR=4M1X,4M1X;DP=5607;DPB=5607;DPRA=15.0618,0.944152;EPP=9488,2617.46;EPPR=7.35324;GTI=3;LEN=1,1;MEANALT=1.93548,2.25862;MQM=31.5092,59.8206;MQMR=60;NS=94;NUMALT=2;ODDS=0.987372;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=154708,42831;QR=67;RO=2;RPL=0,0;RPP=9488,2617.46;RPPR=7.35324;RPR=4368,1204;RUN=1,1;SAF=0,0;SAP=9488,2617.46;SAR=4368,1204;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,6,15:0:0:6,15:212,501:-54.2755,-40.6155,-38.8093,-13.6861,0,-9.17061	1/2:29:0,13,16:0:0:13,16:451,567:-74.0307,-46.536,-42.6227,-27.8017,0,-22.9852	1/1:88:0,87,0:0:0:87,0:3096,0:-214.377,-26.1896,0,-214.377,-26.1896,-214.377	1/1:213:0,212,1:0:0:212,1:7522,36:-572.272,-63.8184,0,-569.824,-61.0649,-569.523	1/2:18:0,11,7:0:0:11,7:392,252:-46.3517,-20.9217,-17.6104,-25.7629,0,-23.6557	1/2:29:0,16,13:0:0:16,13:564,440:-71.1155,-36.0085,-31.1921,-35.418,0,-31.5046	1/1:45:0,44,1:0:0:44,1:1534,36:-117.962,-13.2453,0,-115.023,-9.94808,-114.722	1/1:137:0,137,0:0:0:137,0:4853,0:-336.58,-41.2411,0,-336.58,-41.2411,-336.58	1/2:57:0,21,36:0:0:21,36:739,1283:-149.249,-104.936,-98.6139,-44.6142,0,-33.7771	1/2:41:0,19,22:0:0:19,22:680,779:-108.139,-63.8094,-58.0898,-44.6505,0,-38.0278	1/1:45:0,45,0:0:0:45,0:1596,0:-121.069,-13.5464,0,-121.069,-13.5464,-121.069	1/1:57:0,57,0:0:0:57,0:2006,0:-139.05,-17.1587,0,-139.05,-17.1587,-139.05	1/1:69:0,68,1:0:0:68,1:2428,36:-170.196,-20.47,0,-168.035,-18.0349,-167.734	1/2:26:0,13,13:0:0:13,13:460,468:-68.9811,-38.5463,-34.6329,-30.7617,0,-26.8483	1/1:44:0,43,0:0:0:43,0:1516,0:-117.207,-12.9443,0,-117.207,-12.9443,-117.207	1/1:35:0,35,0:0:0:35,0:1240,0:-90.4823,-10.5361,0,-90.4823,-10.5361,-90.4823	1/1:23:0,23,0:0:0:23,0:820,0:-57.5451,-6.92369,0,-57.5451,-6.92369,-57.5451	1/1:10:0,10,0:0:0:10,0:356,0:-24.6637,-3.0103,0,-24.6637,-3.0103,-24.6637	1/1:24:0,24,0:0:0:24,0:860,0:-60.8608,-7.22472,0,-60.8608,-7.22472,-60.8608	1/2:85:0,40,45:0:0:40,45:1412,1597:-226.414,-130.472,-118.431,-96.2674,0,-82.7211	1/1:99:1,98,0:1:33:98,0:3472,0:-252.283,-26.5028,0,-252.584,-29.5009,-255.253	1/1:100:0,99,1:0:0:99,1:3525,36:-280.357,-29.802,0,-277.419,-26.5047,-277.118	1/1:33:0,31,2:0:0:31,2:1103,72:-82.8044,-9.33193,0,-76.9258,-3.09727,-76.3237	1/2:23:0,14,9:0:0:14,9:504,324:-61.0016,-26.7966,-22.5822,-34.5435,0,-31.8342	1/1:45:0,44,1:0:0:44,1:1557,36:-114.195,-13.2453,0,-111.883,-10.6436,-111.582	1/1:168:0,167,0:0:0:167,0:5947,0:-471.939,-50.272,0,-471.939,-50.272,-471.939	1/2:147:0,70,77:0:0:70,77:2508,2768:-388.244,-226.181,-205.109,-162.386,0,-139.206	1/1:25:0,25,0:0:0:25,0:871,0:-65.0579,-7.52575,0,-65.0579,-7.52575,-65.0579	1/1:151:0,148,0:0:0:148,0:5253,0:-414.403,-44.5524,0,-414.403,-44.5524,-414.403	1/1:45:0,45,0:0:0:45,0:1599,0:-116.756,-13.5464,0,-116.756,-13.5464,-116.756	1/1:67:0,66,0:0:0:66,0:2326,0:-177.689,-19.868,0,-177.689,-19.868,-177.689	1/1:4:0,4,0:0:0:4,0:136,0:-10.5274,-1.20412,0,-10.5274,-1.20412,-10.5274	1/2:20:0,12,8:0:0:12,8:423,257:-48.4116,-21.0355,-17.4231,-27.6836,0,-25.2754	1/2:5:0,3,2:0:0:3,2:104,68:-14.3128,-5.85565,-4.95256,-8.79971,0,-8.19765	1/1:8:0,8,0:0:0:8,0:288,0:-19.9743,-2.40824,0,-19.9743,-2.40824,-19.9743	1/2:15:0,7,8:0:0:7,8:248,288:-38.8759,-23.8592,-21.752,-15.3299,0,-12.9217	1/1:144:0,143,0:0:0:143,0:5032,0:-402.576,-43.0473,0,-402.576,-43.0473,-402.576	1/2:91:0,47,43:0:0:47,43:1657,1529:-231.433,-124.592,-110.444,-106.804,0,-93.8596	1/2:27:0,12,15:0:0:12,15:391,532:-68.2835,-43.6976,-40.0853,-24.8886,0,-20.3732	1/2:2:0,1,1:0:0:1,1:36,36:-5.57393,-3.29724,-2.99621,-2.60173,0,-2.3007	1/1:75:0,74,1:0:0:74,1:2616,32:-192.736,-22.2762,0,-190.528,-19.7895,-190.227	1/2:22:0,4,18:0:0:4,18:144,648:-62.4665,-53.2333,-52.0292,-9.53611,0,-4.11757	1/1:115:0,115,0:0:0:115,0:4102,0:-299.878,-34.6185,0,-299.878,-34.6185,-299.878	1/1:27:0,27,0:0:0:27,0:946,0:-72.7079,-8.12781,0,-72.7079,-8.12781,-72.7079	1/2:26:0,9,17:0:0:9,17:324,612:-72.1724,-50.2959,-47.5867,-22.1997,0,-17.0821	1/2:103:0,38,64:0:0:38,64:1347,2300:-280.513,-187.275,-175.835,-93.2153,0,-73.9494	1/1:79:0,78,1:0:0:78,1:2767,32:-191.886,-23.4803,0,-189.307,-20.5821,-189.006	1/1:141:0,138,2:0:0:138,2:4880,72:-373.236,-41.5421,0,-367.36,-35.5663,-366.758	1/1:57:0,55,1:0:0:55,1:1930,36:-146.429,-16.5567,0,-143.49,-13.5436,-143.189	1/2:80:0,42,38:0:0:42,38:1466,1360:-210.973,-111.261,-98.6182,-100.041,0,-88.6015	1/2:48:0,26,21:0:0:26,21:927,756:-127.449,-61.7525,-53.9257,-65.7428,0,-59.4211	2/2:4:0,0,4:0:0:0,4:0,140:-12.9446,-12.9446,-12.9446,-1.20412,-1.20412,0	1/2:76:0,27,49:0:0:27,49:947,1752:-200.991,-143.214,-135.086,-58.0789,0,-43.3285	1/1:35:0,34,0:0:0:34,0:1202,0:-93.7664,-10.235,0,-93.7664,-10.235,-93.7664	1/1:4:0,4,0:0:0:4,0:144,0:-9.95976,-1.20412,0,-9.95976,-1.20412,-9.95976	1/1:78:0,77,1:0:0:77,1:2702,36:-199.745,-23.1793,0,-197.434,-20.5776,-197.133	1/1:17:0,17,0:0:0:17,0:608,0:-45.9722,-5.11751,0,-45.9722,-5.11751,-45.9722	1/2:6:0,5,1:0:0:5,1:180,36:-16.1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chr01	35461505	.	C	A	101685	PASS	AB=0.465905;ABP=32.1805;AC=146;AF=0.776596;AN=188;AO=4888;CIGAR=1X;DP=6441;DPB=6441;DPRA=0;EPP=10617.2;EPPR=3366.62;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.5436;MQMR=59.326;NS=94;NUMALT=1;ODDS=2.02422;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172431;QR=54737;RO=1549;RPL=4888;RPP=10617.2;RPPR=3366.62;RPR=0;RUN=1;SAF=4888;SAP=10617.2;SAR=0;SRF=1549;SRP=3366.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:8,11:8:279:11:379:-28.7098,0,-19.6826	0/1:85:61,24:61:2166:24:824:-48.885,0,-169.458	1/1:99:0,99:0:0:99:3475:-312.953,-29.802,0	1/1:91:0,90:0:0:90:3181:-285.97,-27.0927,0	0/1:54:33,21:33:1137:21:736:-50.2944,0,-86.3463	0/1:42:16,26:16:552:26:924:-70.8344,0,-37.362	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	1/1:106:1,105:1:36:105:3691:-328.775,-28.3109,0	0/1:78:26,52:26:920:52:1833:-141.757,0,-59.6308	0/1:23:7,16:7:252:16:568:-44.52,0,-16.1053	1/1:55:0,55:0:0:55:1921:-173.166,-16.5567,0	1/1:53:0,53:0:0:53:1836:-165.505,-15.9546,0	1/1:44:0,44:0:0:44:1556:-140.322,-13.2453,0	0/1:80:43,36:43:1509:36:1263:-89.8076,0,-111.903	1/1:49:0,49:0:0:49:1717:-154.781,-14.7505,0	1/1:41:0,41:0:0:41:1456:-131.11,-12.3422,0	1/1:68:0,68:0:0:68:2409:-217.061,-20.47,0	1/1:33:0,33:0:0:33:1159:-104.601,-9.93399,0	1/1:19:0,19:0:0:19:672:-60.1284,-5.71957,0	0/1:98:62,36:62:2198:36:1284:-86.3461,0,-168.511	1/1:65:0,65:0:0:65:2288:-206.17,-19.567,0	1/1:168:1,167:1:36:167:5900:-527.452,-46.9748,0	1/1:70:0,70:0:0:70:2479:-223.353,-21.0721,0	0/1:135:53,82:53:1895:82:2924:-222.738,0,-129.958	1/1:49:0,49:0:0:49:1693:-152.633,-14.7505,0	1/1:261:0,261:0:0:261:9211:-828.705,-78.5688,0	0/1:142:68,74:68:2408:74:2619:-193.119,0,-174.186	1/1:29:1,28:1:36:28:992:-85.9899,-5.1316,0	1/1:110:0,110:0:0:110:3873:-348.653,-33.1133,0	1/1:81:0,81:0:0:81:2860:-257.631,-24.3834,0	1/1:86:0,86:0:0:86:3047:-274.328,-25.8886,0	1/1:4:0,4:0:0:4:121:-11.1896,-1.20412,0	0/1:18:9,9:9:315:9:320:-23.7213,0,-23.2397	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:7:0,7:0:0:7:233:-21.2943,-2.10721,0	0/1:13:7,6:7:248:6:208:-15.1457,0,-18.7508	1/1:169:0,169:0:0:169:5961:-536.491,-50.8741,0	0/1:188:76,112:76:2707:112:3974:-301.216,0,-187.195	0/1:41:24,17:24:860:17:600:-41.9823,0,-65.3796	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:79:3,76:3:108:76:2667:-230.167,-13.7062,0	0/1:23:8,15:8:275:15:528:-40.9277,0,-18.0776	1/1:98:0,98:0:0:98:3485:-313.849,-29.5009,0	1/1:56:0,56:0:0:56:1977:-178.164,-16.8577,0	0/1:58:34,23:34:1197:23:812:-55.863,0,-90.4975	0/1:90:34,56:34:1212:56:1976:-151.006,0,-82.2936	1/1:40:0,40:0:0:40:1416:-127.733,-12.0412,0	1/1:71:0,71:0:0:71:2512:-226.311,-21.3731,0	1/1:72:0,72:0:0:72:2549:-229.66,-21.6742,0	0/1:72:35,37:35:1239:37:1312:-96.7042,0,-90.1395	0/1:164:98,66:98:3476:66:2343:-161.725,0,-263.651	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:92:58,34:58:2030:34:1201:-80.6881,0,-155.183	1/1:34:0,34:0:0:34:1201:-108.369,-10.235,0	1/1:14:0,14:0:0:14:485:-43.977,-4.21442,0	1/1:57:0,57:0:0:57:2005:-180.717,-17.1587,0	1/1:31:0,31:0:0:31:1088:-98.2129,-9.33193,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:33:20,13:20:712:13:452:-31.0771,0,-54.2656	1/1:61:0,61:0:0:61:2146:-193.361,-18.3628,0	1/1:130:2,128:2:72:128:4525:-400.514,-32.2972,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:98:0,98:0:0:98:3475:-312.927,-29.5009,0	0/1:216:120,96:120:4259:96:3382:-239.408,0,-316.589	0/1:91:45,46:45:1591:46:1628:-119.392,0,-116.029	1/1:32:0,32:0:0:32:1108:-100.009,-9.63296,0	1/1:215:0,215:0:0:215:7585:-682.637,-64.7215,0	0/1:77:49,28:49:1745:28:992:-66.4151,0,-134.13	1/1:31:0,31:0:0:31:1088:-98.1731,-9.33193,0	0/1:35:22,13:22:768:13:468:-31.919,0,-58.8564	1/1:104:0,104:0:0:104:3664:-329.578,-31.3071,0	0/1:28:14,14:14:496:14:504:-37.263,0,-36.5454	0/1:49:19,30:19:631:30:1050:-80.0491,0,-42.3033	0/1:30:21,9:21:735:9:320:-20.1115,0,-57.4102	1/1:136:0,136:0:0:136:4786:-430.811,-40.9401,0	0/1:108:70,38:70:2504:38:1337:-87.959,0,-193.057	0/1:28:15,13:15:536:13:464:-33.6687,0,-40.1456	0/1:71:45,26:45:1580:26:920:-61.7393,0,-121.057	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:62:44,18:44:1560:18:636:-38.898,0,-121.973	1/1:21:0,21:0:0:21:718:-64.934,-6.32163,0	1/1:91:0,91:0:0:91:3213:-289.293,-27.3937,0	0/1:129:66,63:66:2326:63:2237:-162.632,0,-170.431	1/1:30:0,30:0:0:30:1045:-94.3578,-9.0309,0	0/1:53:31,22:31:1096:22:780:-54.5684,0,-82.9777	0/1:104:56,48:56:1980:48:1704:-122.278,0,-147.16	0/1:36:13,23:13:455:23:820:-63.285,0,-30.4445	1/1:62:0,62:0:0:62:2184:-196.739,-18.6639,0	1/1:60:0,60:0:0:60:2132:-192.144,-18.0618,0	0/1:46:25,21:25:892:21:748:-53.7975,0,-65.8872	0/1:111:63,48:63:2181:48:1692:-119.134,0,-162.72	0/1:52:36,16:36:1279:16:564:-35.4366,0,-99.7464	1/1:58:0,58:0:0:58:2040:-183.836,-17.4597,0	1/1:59:0,58:0:0:58:2036:-183.137,-17.4597,0
chr01	35461641	.	TGTTG	AGTTA,TGTTA	151681	PASS	AB=0.540138,0.456055;ABP=43.4523,51.486;AC=144,42;AF=0.774194,0.225806;AN=186;AO=5767,1337;CIGAR=1X3M1X,4M1X;DP=7136;DPB=7136.2;DPRA=9.68478,0.913493;EPP=12525.9,2906.27;EPPR=0;GTI=2;LEN=5,1;MEANALT=1.78261,2.19149;MQM=56.3121,59.8616;MQMR=0;NS=93;NUMALT=2;ODDS=1.92247;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0;PQA=12,0;PQR=0;PRO=0;QA=202878,47828;QR=0;RO=0;RPL=5767,1337;RPP=12525.9,2906.27;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12525.9,2906.27;SAR=5767,1337;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:49:0,33,16:0:0:33,16:1174,576:-143,-47.3585,-37.4245,-95.9996,0,-91.1831	1/2:74:0,54,19:0:0:54,19:1909,676:-210.437,-55.0733,-38.8177,-155.366,0,-149.646	1/1:120:0,120,0:0:0:120,0:4232,0:-380.556,-36.1236,0,-380.556,-36.1236,-380.556	1/1:167:0,167,0:0:0:167,0:5831,0:-524.355,-50.272,0,-524.355,-50.272,-524.355	1/2:40:0,13,27:0:0:13,27:461,972:-117.184,-79.6701,-75.7567,-37.8704,0,-29.7425	1/2:60:0,41,19:0:0:41,19:1463,676:-174.681,-55.4475,-43.1053,-119.59,0,-113.87	1/1:95:0,94,0:0:0:94,0:3296,0:-296.048,-28.2968,0,-296.048,-28.2968,-296.048	1/1:171:0,171,0:0:0:171,0:6026,0:-541.898,-51.4761,0,-541.898,-51.4761,-541.898	1/2:74:0,41,33:0:0:41,33:1462,1160:-212.99,-94.7721,-82.4298,-118.57,0,-108.636	1/2:99:0,64,35:0:0:64,35:2260,1256:-286.047,-102.808,-83.5418,-183.595,0,-173.059	1/1:27:0,26,1:0:0:26,1:913,36:-82.0626,-7.82678,0,-79.1249,-4.52954,-78.8238	1/1:59:0,58,0:0:0:58,0:2053,0:-184.537,-17.4597,0,-184.537,-17.4597,-184.537	1/1:51:0,47,0:0:0:47,0:1669,0:-150.044,-14.1484,0,-150.044,-14.1484,-150.044	1/2:40:0,19,20:0:0:19,20:661,720:-112.458,-58.7423,-53.0228,-53.7099,0,-47.6893	1/1:37:0,34,0:0:0:34,0:1196,0:-107.515,-10.235,0,-107.515,-10.235,-107.515	1/1:34:0,34,0:0:0:34,0:1196,0:-107.822,-10.235,0,-107.822,-10.235,-107.822	1/1:24:0,24,0:0:0:24,0:835,0:-75.4466,-7.22472,0,-75.4466,-7.22472,-75.4466	1/1:22:0,22,0:0:0:22,0:786,0:-70.9773,-6.62266,0,-70.9773,-6.62266,-70.9773	1/1:15:0,15,0:0:0:15,0:525,0:-47.4823,-4.51545,0,-47.4823,-4.51545,-47.4823	1/2:217:0,123,94:0:0:123,94:4283,3361:-622.155,-274.397,-237.37,-348.111,0,-319.814	1/1:76:0,76,0:0:0:76,0:2683,0:-241.49,-22.8783,0,-241.49,-22.8783,-241.49	1/1:133:0,132,0:0:0:132,0:4673,0:-420.187,-39.736,0,-420.187,-39.736,-420.187	1/1:97:0,96,0:0:0:96,0:3351,0:-301.063,-28.8989,0,-301.063,-28.8989,-301.063	1/2:53:0,38,15:0:0:38,15:1344,540:-153.825,-44.4211,-32.9819,-109.762,0,-105.246	1/1:58:0,57,1:0:0:57,1:1998,36:-179.59,-17.1587,0,-176.652,-13.8615,-176.351	1/1:282:0,281,1:0:0:281,1:9865,36:-886.291,-84.5894,0,-883.354,-81.2922,-883.053	1/2:173:0,95,77:0:0:95,77:3319,2764:-495.155,-225.459,-196.861,-269.69,0,-246.511	1/1:25:0,25,0:0:0:25,0:883,0:-79.7139,-7.52575,0,-79.7139,-7.52575,-79.7139	1/1:172:0,172,0:0:0:172,0:6012,0:-540.443,-51.7772,0,-540.443,-51.7772,-540.443	1/1:147:0,146,0:0:0:146,0:5156,0:-463.135,-43.9504,0,-463.135,-43.9504,-463.135	1/1:63:0,63,0:0:0:63,0:2221,0:-199.807,-18.9649,0,-199.807,-18.9649,-199.807	1/1:20:0,20,0:0:0:20,0:709,0:-64.0982,-6.0206,0,-64.0982,-6.0206,-64.0982	1/2:17:0,13,4:0:0:13,4:454,144:-49.0135,-12.1095,-8.19611,-37.2613,0,-36.0571	1/1:3:0,3,0:0:0:3,0:106,0:-9.88663,-0.90309,0,-9.88663,-0.90309,-9.88663	1/1:5:0,5,0:0:0:5,0:179,0:-16.456,-1.50515,0,-16.456,-1.50515,-16.456	1/1:15:0,14,1:0:0:14,1:494,36:-44.4043,-4.21442,0,-41.4673,-0.918181,-41.1663	1/1:96:0,96,0:0:0:96,0:3395,0:-305.462,-28.8989,0,-305.462,-28.8989,-305.462	1/2:112:0,67,45:0:0:67,45:2358,1612:-322.963,-131.823,-111.654,-191.495,0,-177.949	1/2:21:0,11,10:0:0:11,10:390,360:-61.4443,-29.6865,-26.3751,-32.0698,0,-29.0595	.:.:.:.:.:.:.:.	1/1:100:0,97,3:0:0:97,3:3413,108:-306.682,-29.1999,0,-297.87,-20.0278,-296.967	1/2:12:0,5,7:0:0:5,7:180,252:-35.5948,-20.9155,-19.4103,-15.039,0,-12.9318	1/1:139:0,137,0:0:0:137,0:4817,0:-432.808,-41.2411,0,-432.808,-41.2411,-432.808	1/1:39:0,39,0:0:0:39,0:1374,0:-123.865,-11.7402,0,-123.865,-11.7402,-123.865	1/2:25:0,17,7:0:0:17,7:593,248:-68.1531,-20.1981,-15.0806,-47.9484,0,-45.8412	1/2:92:0,51,41:0:0:51,41:1748,1438:-259.066,-117.364,-102.012,-142.049,0,-129.707	1/1:87:0,87,0:0:0:87,0:3077,0:-276.828,-26.1896,0,-276.828,-26.1896,-276.828	1/1:180:0,179,0:0:0:179,0:6262,0:-562.3,-53.8844,0,-562.3,-53.8844,-562.3	1/1:111:0,111,0:0:0:111,0:3890,0:-349.727,-33.4143,0,-349.727,-33.4143,-349.727	1/2:77:0,48,29:0:0:48,29:1698,1036:-222.937,-84.8217,-70.3723,-138.471,0,-129.741	1/2:133:0,69,63:0:0:69,63:2419,2255:-380.366,-183.888,-163.117,-196.478,0,-177.513	1/2:7:0,4,3:0:0:4,3:140,108:-20.5493,-9.17208,-7.96796,-11.7327,0,-10.8296	1/2:139:0,84,55:0:0:84,55:3005,1967:-405.389,-160.747,-135.46,-244.999,0,-228.442	1/1:76:0,76,0:0:0:76,0:2679,0:-240.52,-22.8783,0,-240.52,-22.8783,-240.52	1/1:12:0,12,0:0:0:12,0:421,0:-38.2154,-3.61236,0,-38.2154,-3.61236,-38.2154	1/1:131:0,130,0:0:0:130,0:4536,0:-407.102,-39.1339,0,-407.102,-39.1339,-407.102	1/1:36:0,36,0:0:0:36,0:1257,0:-112.034,-10.8371,0,-112.034,-10.8371,-112.034	2/2:8:0,0,8:0:0:0,8:0,288:-26.2674,-26.2674,-26.2674,-2.40824,-2.40824,0	1/2:29:0,9,19:0:0:9,19:323,680:-81.858,-55.5258,-52.8165,-26.4015,0,-20.6819	1/1:56:0,56,0:0:0:56,0:1982,0:-178.553,-16.8577,0,-178.553,-16.8577,-178.553	1/1:65:0,61,4:0:0:61,4:2142,126:-192.249,-18.3628,0,-182.119,-7.91554,-180.915	1/2:3:0,2,1:0:0:2,1:72,32:-8.79487,-2.89828,-2.29622,-6.22973,0,-5.9287	1/1:184:0,184,0:0:0:184,0:6471,0:-581.929,-55.3895,0,-581.929,-55.3895,-581.929	1/2:162:0,82,80:0:0:82,80:2880,2868:-467.871,-234.271,-209.587,-233.954,0,-209.871	1/2:45:0,21,24:0:0:21,24:753,864:-132.237,-70.8517,-64.5301,-61.7438,0,-54.5191	1/1:65:0,64,0:0:0:64,0:2258,0:-202.967,-19.2659,0,-202.967,-19.2659,-202.967	1/1:157:0,156,0:0:0:156,0:5463,0:-490.563,-46.9607,0,-490.563,-46.9607,-490.563	1/2:205:0,82,122:0:0:82,122:2882,4368:-590.124,-356.325,-331.641,-233.921,0,-197.195	1/1:9:0,9,0:0:0:9,0:322,0:-29.2898,-2.70927,0,-29.2898,-2.70927,-29.2898	1/2:41:0,24,17:0:0:24,17:836,608:-117.894,-49.9345,-42.7098,-68.3136,0,-63.196	1/1:31:0,31,0:0:0:31,0:1108,0:-99.8936,-9.33193,0,-99.8936,-9.33193,-99.8936	1/2:10:0,7,3:0:0:7,3:252,108:-29.7151,-9.16966,-7.06245,-20.9051,0,-20.0021	1/2:185:0,98,85:0:0:98,85:3471,3037:-530.262,-247.609,-218.108,-282.649,0,-257.062	1/2:67:0,27,40:0:0:27,40:944,1436:-193.893,-117.49,-109.362,-76.7552,0,-64.714	1/1:133:0,133,0:0:0:133,0:4681,0:-421.235,-40.037,0,-421.235,-40.037,-421.235	1/2:132:0,54,78:0:0:54,78:1903,2800:-383.188,-228.759,-212.504,-154.783,0,-131.303	1/2:81:0,49,32:0:0:49,32:1689,1140:-230.272,-93.2762,-78.5258,-137.347,0,-127.714	1/2:50:0,23,27:0:0:23,27:806,960:-144.153,-78.5885,-71.6648,-65.9173,0,-57.7895	1/1:13:0,13,0:0:0:13,0:456,0:-41.2934,-3.91339,0,-41.2934,-3.91339,-41.2934	1/2:94:0,61,32:0:0:61,32:2157,1148:-269.212,-93.6855,-75.3227,-175.571,0,-165.939	1/1:103:0,102,0:0:0:102,0:3565,0:-320.615,-30.7051,0,-320.615,-30.7051,-320.615	1/1:227:0,227,0:0:0:227,0:7986,0:-717.648,-68.3338,0,-717.648,-68.3338,-717.648	1/2:54:0,21,33:0:0:21,33:734,1188:-156.874,-97.2946,-90.973,-59.9328,0,-49.9988	1/1:45:0,45,0:0:0:45,0:1598,0:-144.004,-13.5464,0,-144.004,-13.5464,-144.004	1/2:23:0,11,12:0:0:11,12:388,428:-66.8157,-35.2464,-31.9351,-31.9236,0,-28.3113	1/2:75:0,46,28:0:0:46,28:1635,1000:-214.604,-81.5271,-67.6797,-133.074,0,-124.645	1/2:16:0,9,7:0:0:9,7:318,252:-46.8093,-20.9208,-18.2116,-26.2453,0,-24.1381	1/1:36:0,34,0:0:0:34,0:1184,0:-106.292,-10.235,0,-106.292,-10.235,-106.292	1/1:35:0,35,0:0:0:35,0:1246,0:-112.346,-10.5361,0,-112.346,-10.5361,-112.346	1/2:17:0,6,11:0:0:6,11:209,396:-49.6564,-32.6714,-30.8652,-17.3372,0,-14.0259	1/2:58:0,25,33:0:0:25,33:890,1188:-169.577,-97.2884,-89.7627,-72.6453,0,-62.7113	1/2:29:0,14,15:0:0:14,15:498,540:-84.9738,-44.4211,-40.2067,-40.9102,0,-36.3947	1/1:108:0,108,0:0:0:108,0:3804,0:-341.857,-32.5112,0,-341.857,-32.5112,-341.857	1/1:46:0,46,0:0:0:46,0:1642,0:-147.632,-13.8474,0,-147.632,-13.8474,-147.632
chr01	35472644	.	C	T	205688	PASS	AB=0.508748;ABP=6.39151;AC=142;AF=0.763441;AN=186;AO=9527;CIGAR=1X;DP=12055;DPB=12055;DPRA=21.8279;EPP=20508.6;EPPR=5390.85;GTI=3;LEN=1;MEANALT=1.03261;MQM=59.4985;MQMR=53.3806;NS=93;NUMALT=1;ODDS=0.467128;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341060;QR=90125;RO=2525;RPL=21;RPP=20508.6;RPPR=5390.85;RPR=9506;RUN=1;SAF=9527;SAP=20690.6;SAR=0;SRF=2525;SRP=5485.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:19,25:19:684:25:891:-67.2389,0,-48.3013	0/1:170:75,95:75:2671:95:3396:-254.618,0,-187.864	1/1:128:0,128:0:0:128:4608:-414.782,-38.5318,0	1/1:257:0,257:0:0:257:9243:-831.587,-77.3647,0	0/1:79:44,35:44:1580:35:1245:-88.5667,0,-118.134	0/1:76:39,37:39:1382:37:1332:-97.2878,0,-101.125	1/1:154:0,154:0:0:154:5516:-496.505,-46.3586,0	1/1:207:0,207:0:0:207:7406:-665.731,-62.3132,0	0/1:182:105,77:105:3739:77:2739:-191.949,0,-279.987	0/1:207:85,122:85:3003:122:4349:-329.105,0,-205.417	1/1:69:0,69:0:0:69:2438:-219.556,-20.7711,0	1/1:94:0,94:0:0:94:3359:-302.479,-28.2968,0	1/1:94:0,94:0:0:94:3363:-302.845,-28.2968,0	0/1:82:46,36:46:1652:36:1294:-92.0046,0,-123.821	1/1:91:1,90:1:36:90:3219:-286.115,-23.7955,0	1/1:69:0,69:0:0:69:2467:-222.253,-20.7711,0	1/1:96:0,96:0:0:96:3440:-309.177,-28.8989,0	1/1:96:0,96:0:0:96:3432:-309.073,-28.8989,0	1/1:67:0,67:0:0:67:2400:-216.21,-20.169,0	0/1:225:112,113:112:3987:113:4060:-297.824,0,-290.116	1/1:410:0,410:0:0:410:14635:-1315.8,-123.422,0	1/1:88:0,88:0:0:88:3148:-283.345,-26.4906,0	1/1:163:0,163:0:0:163:5860:-527.487,-49.0679,0	0/1:204:82,122:82:2911:122:4366:-331.513,0,-198.473	1/1:101:0,101:0:0:101:3620:-325.945,-30.404,0	1/1:442:0,442:0:0:442:15788:-1420.47,-133.055,0	0/1:333:158,175:158:5654:175:6245:-461.764,0,-405.764	1/1:59:0,59:0:0:59:2108:-189.954,-17.7608,0	1/1:236:0,236:0:0:236:8462:-760.814,-71.0431,0	1/1:123:4,119:4:144:119:4264:-370.615,-23.732,0	1/1:169:0,169:0:0:169:6052:-544.65,-50.8741,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.3995	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.68614	1/1:8:0,8:0:0:8:288:-26.2592,-2.40824,0	0/1:5:3,2:3:108:2:72:-5.32298,0,-8.3565	1/1:255:1,254:1:36:254:9102:-815.35,-73.1644,0	0/1:164:100,64:100:3580:64:2284:-156.321,0,-272.12	0/1:74:36,38:36:1296:38:1360:-100.416,0,-94.1887	.:.:.:.:.:.:.:.	1/1:148:4,144:4:144:144:5153:-450.431,-31.2577,0	0/1:51:31,20:31:1112:20:703:-48.1049,0,-84.2869	1/1:219:2,217:2:72:217:7776:-692.95,-59.0985,0	1/1:140:0,140:0:0:140:5004:-450.38,-42.1442,0	0/1:71:34,37:34:1203:37:1328:-98.4421,0,-85.6281	0/1:155:77,78:77:2738:78:2800:-205.52,0,-199.611	1/1:107:0,107:0:0:107:3836:-345.371,-32.2102,0	1/1:279:2,277:2:72:277:9912:-884.994,-77.1556,0	1/1:134:0,134:0:0:134:4801:-431.951,-40.338,0	0/1:257:168,88:168:6006:88:3156:-206.882,0,-461.474	0/1:204:94,110:94:3363:110:3930:-292.362,0,-241.22	0/1:8:2,6:2:72:6:216:-17.3799,0,-4.42355	0/1:164:86,78:86:3076:78:2796:-202.482,0,-226.28	1/1:72:0,71:0:0:71:2544:-228.992,-21.3731,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:145:0,145:0:0:145:5189:-466.964,-43.6494,0	1/1:104:1,103:1:36:103:3678:-327.367,-27.7114,0	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.3664	0/1:29:14,15:14:504:15:540:-40.2058,0,-36.5269	1/1:78:0,78:0:0:78:2804:-252.549,-23.4803,0	1/1:98:0,98:0:0:98:3506:-315.713,-29.5009,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9371	1/1:196:0,196:0:0:196:7017:-631.582,-59.0019,0	0/1:227:107,120:107:3812:120:4304:-319.092,0,-273.824	0/1:94:33,61:33:1179:61:2184:-167.467,0,-77.7046	1/1:113:0,112:0:0:112:4000:-359.799,-33.7154,0	1/1:273:3,270:3:99:270:9642:-858.225,-72.9498,0	0/1:125:80,45:80:2851:45:1616:-108.005,0,-216.712	1/1:29:0,29:0:0:29:1044:-94.205,-8.72987,0	0/1:95:39,56:39:1387:56:2004:-151.985,0,-95.5008	1/1:103:0,103:0:0:103:3708:-333.784,-31.0061,0	0/1:21:11,10:11:392:10:360:-26.418,0,-29.2739	0/1:101:33,68:33:1184:68:2428:-188.356,0,-75.8299	0/1:109:60,49:60:2147:49:1751:-125.041,0,-158.552	1/1:240:1,239:1:36:239:8538:-764.478,-68.654,0	0/1:192:80,112:80:2851:112:4024:-304.495,0,-197.996	0/1:178:82,96:82:2913:96:3440:-256.21,0,-207.029	0/1:212:115,97:115:4088:97:3481:-249.199,0,-301.817	1/1:17:0,17:0:0:17:612:-55.3105,-5.11751,0	0/1:182:77,105:77:2755:105:3760:-283.567,0,-191.833	1/1:147:0,147:0:0:147:5272:-474.246,-44.2514,0	1/1:294:1,293:1:36:293:10482:-939.649,-84.9071,0	0/1:130:63,67:63:2259:67:2388:-176.007,0,-163.398	1/1:64:0,64:0:0:64:2300:-207.251,-19.2659,0	0/1:165:69,96:69:2476:96:3444:-260.391,0,-172.672	0/1:193:90,103:90:3216:103:3671:-272.102,0,-230.335	0/1:35:19,16:19:680:16:576:-41.6307,0,-50.7527	1/1:102:0,102:0:0:102:3647:-328.385,-30.7051,0	1/1:81:0,81:0:0:81:2916:-262.558,-24.3834,0	0/1:34:17,17:17:608:17:608:-44.8137,0,-43.9984	0/1:74:33,41:33:1179:41:1472:-110.481,0,-83.2033	0/1:104:65,39:65:2328:39:1404:-95.3475,0,-177.78	1/1:155:1,154:1:36:154:5528:-493.995,-43.157,0	1/1:132:0,132:0:0:132:4732:-425.65,-39.736,0
chr01	35472651	.	CTTA	CTCA,TTCC	335856	PASS	AB=0.504648,0.48993;ABP=3.97914,7.55845;AC=142,44;AF=0.763441,0.236559;AN=186;AO=9617,2556;CIGAR=2M1X1M,1X1M2X;DP=12233;DPB=12232.5;DPRA=22.1504,1.11005;EPP=43.7946,81.5231;EPPR=3.0103;GTI=2;LEN=1,4;MEANALT=2.02174,2.4717;MQM=59.4931,53.2355;MQMR=60;NS=93;NUMALT=2;ODDS=2.24076;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=343762,89830;QR=282;RO=8;RPL=4596,1430;RPP=43.7946,81.5231;RPPR=3.0103;RPR=5021,1126;RUN=1,1;SAF=9617,2556;SAP=20886.1,5553.29;SAR=0,0;SRF=8;SRP=20.3821;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,25,19:0:0:25,19:896,680:-128.604,-55.5512,-48.0255,-73.4101,0,-67.6905	1/2:175:0,97,77:0:0:97,77:3488,2673:-500.548,-216.027,-186.827,-284.631,0,-261.452	1/1:134:0,132,0:0:0:132,0:4727,0:-425.201,-39.736,0,-425.201,-39.736,-425.201	1/1:261:0,259,1:0:0:259,1:9277,25:-834.543,-77.9668,0,-832.753,-76.2399,-832.452	1/2:79:0,35,44:0:0:35,44:1260,1558:-229.703,-126.895,-116.359,-103.165,0,-89.9195	1/2:78:0,38,39:0:0:38,39:1351,1353:-219.502,-109.405,-97.9658,-110.088,0,-98.3482	1/1:159:0,159,0:0:0:159,0:5650,0:-508.521,-47.8638,0,-508.521,-47.8638,-508.521	1/1:218:0,217,0:0:0:217,0:7733,0:-695.297,-65.3235,0,-695.297,-65.3235,-695.297	1/2:184:0,78,105:0:0:78,105:2795,3656:-523.82,-295.881,-272.4,-227.933,0,-196.325	1/2:208:0,122,85:0:0:122,85:4359,2994:-597.505,-242.331,-205.605,-355.167,0,-329.58	1/1:70:0,70,0:0:0:70,0:2491,0:-224.071,-21.0721,0,-224.071,-21.0721,-224.071	1/1:94:0,94,0:0:0:94,0:3368,0:-303.29,-28.2968,0,-303.29,-28.2968,-303.29	1/1:96:0,96,0:0:0:96,0:3437,0:-309.508,-28.8989,0,-309.508,-28.8989,-309.508	1/2:85:0,37,48:0:0:37,48:1332,1705:-247.405,-138.828,-127.69,-108.934,0,-94.4841	1/1:92:1,91,0:1:36:91,0:3256,0:-289.625,-24.0965,0,-289.926,-27.3937,-292.864	1/1:70:0,70,0:0:0:70,0:2512,0:-226.23,-21.0721,0,-226.23,-21.0721,-226.23	1/1:97:1,96,0:1:30:96,0:3435,0:-306.076,-26.2003,0,-306.377,-28.8989,-308.775	1/1:98:0,97,0:0:0:97,0:3484,0:-313.479,-29.1999,0,-313.479,-29.1999,-313.479	1/1:69:0,69,0:0:0:69,0:2475,0:-222.968,-20.7711,0,-222.968,-20.7711,-222.968	1/2:230:1,116,111:1:36:116,111:4155,3891:-651.433,-312.904,-280.922,-335.913,0,-305.436	1/1:408:0,408,0:0:0:408,0:14565,0:-1310.04,-122.82,0,-1310.04,-122.82,-1310.04	1/1:89:0,89,0:0:0:89,0:3183,0:-286.555,-26.7917,0,-286.555,-26.7917,-286.555	1/1:164:0,163,0:0:0:163,0:5817,0:-523.343,-49.0679,0,-523.343,-49.0679,-523.343	1/2:206:0,120,86:0:0:120,86:4291,3013:-593.097,-243.299,-207.175,-350.15,0,-324.261	1/1:101:0,101,0:0:0:101,0:3611,0:-325.132,-30.404,0,-325.132,-30.404,-325.132	1/1:446:0,440,0:0:0:440,0:15680,0:-1410.48,-132.453,0,-1410.48,-132.453,-1410.48	1/2:338:0,174,163:0:0:174,163:6198,5785:-973.625,-468.568,-416.189,-505.201,0,-456.133	1/1:59:0,59,0:0:0:59,0:2098,0:-189.056,-17.7608,0,-189.056,-17.7608,-189.056	1/1:242:0,242,0:0:0:242,0:8620,0:-775.614,-72.8493,0,-775.614,-72.8493,-775.614	1/1:125:0,120,4:0:0:120,4:4273,142:-384.38,-36.1236,0,-372.827,-24.5344,-371.622	1/1:170:0,170,0:0:0:170,0:6071,0:-546.433,-51.1751,0,-546.433,-51.1751,-546.433	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	2/2:6:0,0,6:0:0:0,6:0,215:-19.6721,-19.6721,-19.6721,-1.80618,-1.80618,0	1/2:3:0,2,1:0:0:2,1:72,36:-9.16364,-3.2882,-2.68614,-6.23466,0,-5.93363	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:5:0,2,3:0:0:2,3:66,103:-13.9463,-8.61645,-8.01439,-5.66371,0,-4.76062	1/1:263:1,262,0:1:36:262,0:9409,0:-842.979,-75.5726,0,-843.28,-78.8699,-846.217	1/2:168:0,68,97:0:0:68,97:2440,3419:-476.481,-277.714,-257.244,-198.767,0,-169.568	1/2:75:0,38,36:0:0:38,36:1364,1273:-214.666,-103.408,-91.9692,-111.274,0,-100.437	.:.:.:.:.:.:.:.	1/1:150:0,146,4:0:0:146,4:5221,143:-469.356,-43.9504,0,-457.713,-31.951,-456.509	1/2:52:0,20,32:0:0:20,32:720,1126:-150.326,-91.713,-85.6924,-58.9688,0,-49.3359	1/1:222:0,219,2:0:0:219,2:7849,72:-705.982,-65.9256,0,-700.117,-60.0603,-699.515	1/1:142:1,141,0:1:36:141,0:5045,0:-450.472,-39.148,0,-450.773,-42.4452,-453.711	1/2:72:0,38,34:0:0:38,34:1342,1177:-204.216,-94.9371,-83.498,-109.626,0,-99.3914	1/2:159:0,78,79:0:0:78,79:2774,2767:-450.714,-224.704,-201.224,-226.003,0,-202.222	1/1:109:0,108,0:0:0:108,0:3852,0:-346.454,-32.5112,0,-346.454,-32.5112,-346.454	1/1:281:0,278,2:0:0:278,2:9937,69:-893.649,-83.6863,0,-888.047,-78.0809,-887.445	1/1:138:0,137,0:0:0:137,0:4910,0:-441.416,-41.2411,0,-441.416,-41.2411,-441.416	1/2:259:0,90,169:0:0:90,169:3220,5924:-743.492,-481.008,-453.915,-262.839,0,-211.965	1/2:205:0,111,93:0:0:111,93:3975,3301:-592.497,-268.715,-235.301,-323.778,0,-295.782	1/2:9:0,7,2:0:0:7,2:243,72:-25.6972,-6.22973,-4.12252,-19.8233,0,-19.2212	1/2:169:0,81,88:0:0:81,88:2876,3079:-483.876,-249.556,-225.173,-234.671,0,-208.18	1/1:71:0,71,0:0:0:71,0:2540,0:-228.845,-21.3731,0,-228.845,-21.3731,-228.845	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:147:0,145,0:0:0:145,0:5181,0:-465.733,-43.6494,0,-465.733,-43.6494,-465.733	1/1:107:0,106,1:0:0:106,1:3790,36:-340.607,-31.9092,0,-33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chr01	35501316	.	A	C	26810.3	PASS	AB=0.479976;ABP=14.837;AC=44;AF=0.234043;AN=188;AO=1640;CIGAR=1X;DP=8780;DPB=8780;DPRA=0.801186;EPP=3564.23;EPPR=15494.3;GTI=2;LEN=1;MEANALT=1.05882;MQM=59.8835;MQMR=59.9519;NS=94;NUMALT=1;ODDS=4.13182;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58686;QR=252705;RO=7134;RPL=0;RPP=3564.23;RPPR=12076.3;RPR=1640;RUN=1;SAF=1640;SAP=3564.23;SAR=0;SRF=6716;SRP=12076.3;SRR=418;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:32,41:32:1148:41:1454:-109.181,0,-81.6546	0/1:63:40,22:40:1398:22:784:-51.8615,0,-107.091	0/0:148:148,0:148:5281:0:0:0,-44.5524,-475.426	0/0:143:142,1:142:5042:1:32:0,-39.848,-450.727	0/1:41:25,16:25:900:16:576:-39.8328,0,-68.9788	0/1:38:15,23:15:536:23:824:-63.0442,0,-37.1357	0/0:106:106,0:106:3755:0:0:0,-31.9092,-338.148	0/0:100:100,0:100:3576:0:0:0,-30.103,-321.962	0/1:114:46,68:46:1636:68:2422:-183.475,0,-113.211	0/1:71:20,51:20:708:51:1828:-143.428,0,-42.6725	0/0:152:152,0:152:5406:0:0:0,-45.7566,-486.669	0/0:136:136,0:136:4822:0:0:0,-40.9401,-434.133	0/0:142:141,0:141:5000:0:0:0,-42.4452,-449.785	0/1:88:51,37:51:1798:37:1332:-93.661,0,-135.607	0/0:105:105,0:105:3727:0:0:0,-31.6081,-335.628	0/0:115:115,0:115:4074:0:0:0,-34.6184,-366.847	0/0:74:74,0:74:2569:0:0:0,-22.2762,-231.454	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.382	0/0:66:66,0:66:2313:0:0:0,-19.868,-208.431	0/1:117:56,61:56:1970:61:2185:-161.204,0,-142.351	0/0:156:156,0:156:5500:0:0:0,-46.9607,-495.129	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:93:92,1:92:3190:1:36:0,-24.3975,-283.694	0/1:36:24,12:24:856:12:432:-28.3841,0,-66.524	0/0:97:97,0:97:3423:0:0:0,-29.1999,-308.281	0/0:209:208,1:208:7376:1:36:0,-59.317,-660.291	0/1:197:105,92:105:3707:92:3304:-238.275,0,-274.528	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.82	0/0:200:200,0:200:7146:0:0:0,-60.206,-643.109	0/0:79:79,0:79:2787:0:0:0,-23.7814,-251.067	0/0:95:95,0:95:3392:0:0:0,-28.5978,-305.495	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/1:24:12,12:12:428:12:432:-31.9965,0,-31.6341	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:23:13,10:13:464:10:345:-24.4571,0,-35.1738	0/0:258:258,0:258:9191:0:0:0,-77.6657,-827.154	0/1:67:38,29:38:1364:29:1036:-73.3826,0,-102.891	0/1:103:54,49:54:1913:49:1756:-127.239,0,-141.431	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:87:86,1:86:3041:1:36:0,-22.5913,-270.322	0/1:59:41,18:41:1442:18:648:-40.8911,0,-112.311	0/0:168:168,0:168:5906:0:0:0,-50.573,-531.208	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/1:59:29,30:29:1032:30:1076:-79.3921,0,-75.4327	0/1:99:47,52:47:1688:52:1860:-137.878,0,-122.405	0/0:93:93,0:93:3275:0:0:0,-27.9958,-294.96	0/0:117:115,2:115:4051:2:72:0,-28.3838,-357.905	0/0:92:92,0:92:3220:0:0:0,-27.6948,-290.019	0/1:90:48,42:48:1693:42:1504:-108.562,0,-125.562	0/1:84:41,43:41:1449:43:1548:-114.327,0,-105.417	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:130:66,64:66:2360:64:2269:-165.333,0,-173.525	0/0:53:52,0:52:1822:0:0:0,-15.6536,-163.889	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0039	0/0:127:127,0:127:4499:0:0:0,-38.2308,-405.012	0/0:51:51,0:51:1778:0:0:0,-15.3525,-160.299	0/1:16:10,6:10:360:6:216:-14.9731,0,-27.9278	0/1:24:14,10:14:500:10:360:-25.5149,0,-38.1115	0/0:134:134,0:134:4713:0:0:0,-40.338,-424.328	0/0:143:140,2:140:4943:2:72:0,-36.2694,-438.186	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/0:98:98,0:98:3493:0:0:0,-29.5009,-314.58	0/1:123:59,64:59:2112:64:2286:-168.96,0,-153.322	0/1:83:42,41:42:1497:41:1468:-107.431,0,-110.037	0/0:77:77,0:77:2695:0:0:0,-23.1793,-242.792	0/0:137:137,0:137:4854:0:0:0,-41.2411,-437.016	0/1:97:23,74:23:824:74:2637:-208.376,0,-45.2834	0/0:108:108,0:108:3849:0:0:0,-32.5112,-346.604	0/1:69:34,35:34:1212:35:1256:-92.5742,0,-88.6153	0/0:82:82,0:82:2899:0:0:0,-24.6845,-261.112	0/1:39:24,15:24:856:15:536:-36.8346,0,-65.6209	0/1:71:44,27:44:1545:27:960:-65.3431,0,-117.92	0/1:79:50,29:50:1784:29:1044:-70.4934,0,-137.061	0/0:191:191,0:191:6783:0:0:0,-57.4967,-610.412	0/1:163:89,74:89:3181:74:2652:-189.858,0,-237.445	0/1:154:57,97:57:1927:97:3468:-265.974,0,-127.336	0/1:92:47,45:47:1658:45:1608:-117.315,0,-121.809	0/0:24:24,0:24:844:0:0:0,-7.22472,-76.2789	0/1:85:60,25:60:2110:25:900:-55.7335,0,-164.578	0/0:148:148,0:148:5121:0:0:0,-44.5524,-461.028	0/0:164:163,0:163:5798:0:0:0,-49.0679,-521.57	0/1:70:42,28:42:1500:28:1004:-69.6014,0,-114.222	0/0:117:117,0:117:4162:0:0:0,-35.2205,-374.762	0/1:75:45,30:45:1601:30:1064:-73.4938,0,-121.801	0/1:130:79,51:79:2832:51:1828:-125.667,0,-215.976	0/1:19:13,6:13:464:6:212:-13.7052,0,-36.3779	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/0:90:87,2:87:3082:2:72:0,-20.3148,-270.77	0/1:120:69,51:69:2468:51:1824:-128.318,0,-186.247	0/1:190:113,77:113:4022:77:2772:-192.525,0,-304.971	0/1:96:39,57:39:1384:57:2044:-155.333,0,-95.96	0/0:124:124,0:124:4417:0:0:0,-37.3277,-397.703	0/0:160:160,0:160:5663:0:0:0,-48.1648,-509.79
chr01	35501319	.	T	C	146864	PASS	AB=0.520626;ABP=15.2826;AC=144;AF=0.765957;AN=188;AO=6823;CIGAR=1X;DP=8429;DPB=8429;DPRA=0;EPP=14810.3;EPPR=3477.37;GTI=2;LEN=1;MEANALT=1.06383;MQM=59.9505;MQMR=59.9094;NS=94;NUMALT=1;ODDS=2.99011;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243664;QR=56833;RO=1600;RPL=0;RPP=14819;RPPR=3477.37;RPR=6823;RUN=1;SAF=6822;SAP=14810.3;SAR=1;SRF=1600;SRP=3477.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:37,30:37:1316:30:1068:-75.9613,0,-98.2714	0/1:60:22,38:22:769:38:1368:-105.359,0,-51.4561	1/1:147:0,147:0:0:147:5240:-471.74,-44.2514,0	1/1:139:1,138:1:36:138:4910:-438.453,-38.2449,0	0/1:37:13,24:13:452:24:852:-65.8623,0,-29.873	0/1:41:25,16:25:892:16:572:-39.4712,0,-68.2575	1/1:105:0,105:0:0:105:3763:-338.869,-31.6082,0	1/1:95:0,95:0:0:95:3361:-302.701,-28.5979,0	0/1:117:64,52:64:2219:52:1860:-132.509,0,-164.174	0/1:71:50,21:50:1776:21:740:-45.545,0,-138.75	1/1:145:0,145:0:0:145:5176:-465.977,-43.6494,0	1/1:132:0,132:0:0:132:4736:-426.389,-39.736,0	1/1:123:0,123:0:0:123:4372:-393.654,-37.0267,0	0/1:83:32,51:32:1144:51:1824:-139.456,0,-78.284	1/1:102:0,102:0:0:102:3654:-329.063,-30.7051,0	1/1:111:0,111:0:0:111:3972:-357.671,-33.4143,0	1/1:68:0,68:0:0:68:2423:-218.326,-20.47,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:65:0,65:0:0:65:2308:-207.981,-19.567,0	0/1:115:59,55:59:2120:55:1970:-143.02,0,-156.514	1/1:155:0,155:0:0:155:5544:-499.066,-46.6597,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:92:1,91:1:36:91:3252:-289.275,-24.0965,0	0/1:35:12,23:12:428:23:824:-63.9473,0,-28.1922	1/1:99:0,99:0:0:99:3528:-317.729,-29.802,0	1/1:193:1,192:1:36:192:6884:-616.029,-54.5005,0	0/1:190:91,99:91:3260:99:3548:-262.333,0,-236.425	1/1:34:0,34:0:0:34:1208:-109.024,-10.235,0	1/1:187:0,187:0:0:187:6695:-602.62,-56.2926,0	1/1:75:0,75:0:0:75:2677:-241.174,-22.5773,0	1/1:92:0,92:0:0:92:3284:-295.78,-27.6948,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:23:11,12:11:388:12:428:-31.9351,0,-28.3337	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:23:9,14:9:316:14:504:-38.7744,0,-21.8552	1/1:225:0,224:0:0:224:8022:-721.632,-67.4307,0	0/1:67:27,40:27:964:40:1436:-109.368,0,-66.9078	0/1:102:48,54:48:1703:54:1921:-142.452,0,-122.757	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:81:1,80:1:36:80:2868:-254.759,-20.7852,0	0/1:56:17,39:17:612:39:1388:-108.361,0,-38.5558	1/1:168:0,168:0:0:168:6004:-540.092,-50.573,0	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	0/1:57:31,26:31:1089:26:919:-65.8672,0,-81.1586	0/1:99:51,48:51:1790:48:1720:-125.284,0,-131.576	1/1:91:1,89:1:36:89:3187:-283.474,-23.8343,0	1/1:105:2,103:2:72:103:3664:-323.129,-24.7714,0	1/1:83:0,83:0:0:83:2976:-268.065,-24.9855,0	0/1:90:42,48:42:1504:48:1696:-125.829,0,-108.562	0/1:80:42,38:42:1504:38:1360:-98.6182,0,-111.572	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:128:58,70:58:2072:70:2485:-185.372,0,-148.213	1/1:47:0,47:0:0:47:1662:-149.864,-14.1484,0	1/1:20:0,20:0:0:20:716:-64.7654,-6.0206,0	1/1:121:0,121:0:0:121:4293:-386.548,-36.4246,0	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	0/1:16:6,10:6:212:10:352:-27.2017,0,-14.6079	0/1:25:9,16:9:320:16:561:-43.2922,0,-21.612	1/1:141:0,141:0:0:141:5049:-454.552,-42.4452,0	1/1:128:2,126:2:72:126:4492:-397.612,-31.6951,0	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	1/1:78:0,78:0:0:78:2780:-250.442,-23.4803,0	0/1:114:60,54:60:2129:54:1936:-140.199,0,-157.557	0/1:83:42,41:42:1508:41:1464:-107.071,0,-111.029	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:136:0,136:0:0:136:4848:-436.476,-40.9401,0	0/1:95:75,20:75:2631:20:720:-36.5309,0,-208.436	1/1:104:0,104:0:0:104:3712:-334.281,-31.3071,0	0/1:68:36,32:36:1281:32:1148:-83.1598,0,-95.1212	1/1:72:0,72:0:0:72:2566:-231.16,-21.6742,0	0/1:40:15,25:15:540:25:888:-68.1978,0,-36.8953	0/1:72:26,46:26:932:46:1636:-125.808,0,-62.4889	0/1:79:29,50:29:1040:50:1788:-137.421,0,-70.133	1/1:190:0,190:0:0:190:6777:-609.946,-57.1957,0	0/1:160:73,87:73:2620:87:3124:-233.221,0,-187.882	0/1:149:90,59:90:3139:59:2079:-142.525,0,-237.883	0/1:90:46,44:46:1640:44:1576:-115.039,0,-120.796	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:83:28,55:28:1004:55:1980:-153.488,0,-65.6842	1/1:149:0,149:0:0:149:5309:-477.937,-44.8535,0	1/1:150:0,150:0:0:150:5333:-480.102,-45.1545,0	0/1:63:28,35:28:993:35:1237:-92.6674,0,-70.7153	1/1:109:0,109:0:0:109:3884:-349.756,-32.8123,0	0/1:72:30,42:30:1044:42:1508:-114.34,0,-72.5922	0/1:125:52,73:52:1849:73:2616:-198.051,0,-129.059	0/1:17:7,10:7:228:10:360:-27.6268,0,-15.7201	1/1:77:0,77:0:0:77:2754:-248.102,-23.1793,0	1/1:84:2,81:2:72:81:2908:-255.118,-18.5086,0	0/1:118:50,68:50:1792:68:2435:-183.88,0,-126.041	0/1:192:76,116:76:2709:116:4148:-315.705,0,-186.255	0/1:93:54,39:54:1932:39:1379:-96.4122,0,-146.161	1/1:111:0,111:0:0:111:3976:-358.03,-33.4143,0	1/1:151:0,151:0:0:151:5403:-486.388,-45.4555,0
chr01	35539798	.	A	G	9025.33	PASS	AB=0.431033;ABP=374.717;AC=81;AF=0.430851;AN=188;AO=4067;CIGAR=1X;DP=10148;DPB=10148;DPRA=37.1392;EPP=8464.84;EPPR=12651;GTI=45;LEN=1;MEANALT=1.07692;MQM=19.0128;MQMR=20.1222;NS=94;NUMALT=1;ODDS=1.25381;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141846;QR=217885;RO=6074;RPL=4024;RPP=8464.84;RPPR=12651;RPR=43;RUN=1;SAF=0;SAP=8834.39;SAR=4067;SRF=0;SRP=13192.5;SRR=6074;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:63:48,15:48:1716:15:519:0,-1.33412,-44.6954	0/1:42:31,11:31:1112:11:383:-0.320516,0,-24.2349	0/1:149:79,70:79:2844:70:2470:-37.8057,0,-53.8326	0/1:189:89,100:89:3184:100:3457:-125.473,0,-120.056	0/0:45:40,5:40:1431:5:172:0,-6.21731,-53.2392	0/0:13:10,3:10:360:3:99:0,-0.382408,-8.18945	0/1:37:17,20:17:612:20:708:-24.8079,0,-23.253	0/1:139:66,73:66:2357:73:2544:-42.5805,0,-40.4238	0/1:118:79,39:79:2836:39:1350:-9.84565,0,-57.3273	0/1:142:95,47:95:3395:47:1617:-46.9378,0,-139.506	0/1:63:31,32:31:1116:32:1114:-39.0319,0,-44.496	0/1:125:76,49:76:2727:49:1669:-19.0758,0,-57.5372	0/1:123:71,52:71:2556:52:1834:-23.4477,0,-51.7776	0/1:65:50,15:50:1792:15:521:-1.04031,0,-53.8165	0/1:98:45,53:45:1620:53:1848:-66.0443,0,-62.4126	0/1:62:33,29:33:1188:29:975:-22.4904,0,-31.1208	0/1:56:25,31:25:900:31:1037:-18.9174,0,-14.5431	0/1:47:19,28:19:684:28:991:-18.5811,0,-14.387	0/1:25:13,12:13:468:12:424:-6.61614,0,-8.87304	0/0:396:336,60:336:12054:60:2100:0,-8.14794,-547.765	0/1:312:155,157:155:5564:157:5461:-128.959,0,-142.916	0/1:123:61,62:61:2179:62:2153:-92.867,0,-99.8875	0/1:110:63,47:63:2268:47:1645:-53.5045,0,-92.8225	0/0:45:37,8:37:1332:8:279:0,-1.92282,-48.4443	0/1:44:16,28:16:576:28:971:-26.5274,0,-10.8777	0/1:400:198,202:198:7107:202:7048:-305.541,0,-325.519	0/1:204:150,54:150:5375:54:1924:-16.3626,0,-160.469	0/1:50:18,32:18:648:32:1139:-32.3952,0,-12.1232	0/1:385:186,198:186:6679:198:6932:-300.185,0,-306.85	0/1:68:30,38:30:1076:38:1343:-33.2378,0,-26.0087	0/1:118:62,56:62:2224:56:1953:-67.0529,0,-91.025	1/1:3:0,3:0:0:3:98:-4.3486,-0.90309,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-7.24943	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.39738	0/1:8:6,2:6:216:2:72:-0.0578411,0,-5.27733	0/0:14:13,1:13:468:1:36:0,-2.91648,-14.3788	0/1:347:162,185:162:5795:185:6471:-284.626,0,-258.93	0/0:117:94,23:94:3358:23:811:0,-2.33437,-104.029	0/1:54:33,20:33:1188:20:712:-7.51441,0,-23.6039	0/0:3:3,0:3:108:0:0:0,-0.90309,-4.65279	0/1:45:27,18:27:968:18:628:-11.9903,0,-27.4421	0/1:24:17,7:17:612:7:241:-2.79256,0,-18.1566	0/1:117:54,63:54:1944:63:2188:-54.8887,0,-46.5947	0/1:84:39,45:39:1395:45:1583:-58.3447,0,-50.9427	0/1:84:56,28:56:2016:28:988:-25.6652,0,-85.4613	0/1:92:75,17:75:2692:17:599:-8.25714,0,-134.721	0/1:85:42,43:42:1504:43:1506:-24.6404,0,-28.6391	0/1:233:121,111:121:4339:111:3843:-133.526,0,-175.825	0/1:98:47,51:47:1688:51:1782:-66.2604,0,-64.7095	0/1:142:102,40:102:3655:40:1398:-29.5463,0,-155.707	0/1:53:40,13:40:1431:13:446:-11.2013,0,-71.2784	0/1:16:10,6:10:360:6:204:-5.63108,0,-15.0463	0/0:191:156,35:156:5612:35:1219:0,-16.6069,-147.849	0/1:55:32,22:32:1144:22:780:-30.6857,0,-58.2082	0/1:9:4,5:4:144:5:176:-3.25839,0,-2.46102	0/1:167:89,78:89:3204:78:2744:-59.1281,0,-84.203	0/1:19:7,12:7:252:12:415:-16.0835,0,-8.86517	0/0:10:9,1:9:324:1:36:0,-0.63677,-18.1017	0/1:29:22,7:22:792:7:240:-6.11252,0,-39.6306	0/1:47:25,22:25:896:22:770:-17.5511,0,-23.606	0/1:120:60,60:60:2152:60:2061:-75.0428,0,-85.2888	0/1:4:1,3:1:36:3:108:-4.63832,0,-0.882465	0/1:374:230,144:230:8238:144:5046:-191.467,0,-407.819	0/1:268:182,86:182:6536:86:2998:-76.6316,0,-272.291	0/1:64:43,21:43:1544:21:731:-11.0058,0,-43.1764	0/1:76:53,23:53:1900:23:804:-19.5399,0,-85.4703	0/1:271:159,112:159:5707:112:3914:-124.475,0,-240.746	0/1:158:130,27:130:4637:27:960:-4.54688,0,-204.837	0/1:35:13,22:13:464:22:733:-20.4087,0,-9.45391	0/1:28:17,11:17:612:11:387:-4.44725,0,-11.7392	0/1:62:27,35:27:957:35:1221:-55.3525,0,-42.7456	0/1:19:15,4:15:531:4:143:-2.08618,0,-24.6378	0/1:39:27,12:27:963:12:397:-1.91095,0,-20.9053	0/1:82:58,24:58:2079:24:835:-3.36404,0,-46.6042	0/1:141:70,71:70:2520:71:2475:-58.716,0,-63.6848	0/1:227:164,63:164:5891:63:2172:-49.0057,0,-251.759	0/0:87:80,7:80:2871:7:230:0,-17.9996,-91.5101	0/1:117:82,34:82:2944:34:1212:-4.78901,0,-66.2509	0/1:38:25,13:25:900:13:460:-3.87089,0,-19.7819	0/0:158:130,28:130:4659:28:983:0,-7.41666,-150.501	0/1:136:76,60:76:2736:60:2076:-28.3008,0,-54.0629	0/1:325:163,162:163:5830:162:5675:-204.21,0,-231.863	0/1:82:63,19:63:2264:19:646:-9.64246,0,-99.5693	0/1:79:41,38:41:1476:38:1334:-46.151,0,-61.2022	0/1:69:40,29:40:1421:29:998:-33.0923,0,-57.3087	0/1:150:99,51:99:3564:51:1806:-50.9587,0,-142.347	0/1:27:14,13:14:500:13:456:-7.08905,0,-11.3412	0/1:119:49,70:49:1760:70:2432:-48.1449,0,-27.1637	0/1:115:52,63:52:1853:63:2162:-38.5684,0,-29.9525	0/1:39:22,17:22:788:17:603:-12.8094,0,-19.4715	0/1:78:55,23:55:1967:23:803:-9.66377,0,-58.154	0/1:95:77,18:77:2768:18:625:-4.40507,0,-119.204	0/1:280:145,134:145:5208:134:4667:-163.304,0,-208.426	0/1:178:92,86:92:3308:86:3027:-106.433,0,-130.5
chr01	35539804	.	G	C	2861.51	PASS	AB=0.456834;ABP=62.8131;AC=43;AF=0.228723;AN=188;AO=1777;CIGAR=1X;DP=10399;DPB=10399;DPRA=0.803191;EPP=3861.72;EPPR=18695.1;GTI=28;LEN=1;MEANALT=1;MQM=18.2161;MQMR=19.9758;NS=94;NUMALT=1;ODDS=0.825215;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63456;QR=308699;RO=8620;RPL=1777;RPP=3861.72;RPPR=18695.1;RPR=0;RUN=1;SAF=0;SAP=3861.72;SAR=1777;SRF=0;SRP=18721.1;SRR=8620;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:23,41:23:828:41:1472:-34.1749,0,-8.4506	0/1:44:27,17:27:945:17:612:-6.47228,0,-19.6137	0/0:154:154,0:154:5509:0:0:0,-46.3586,-186.954	0/0:194:194,0:194:6946:0:0:0,-58.3998,-369.067	0/1:45:10,35:10:360:35:1241:-37.8635,0,-2.88698	0/1:13:5,8:5:180:8:288:-5.28902,0,-2.1485	0/0:39:39,0:39:1396:0:0:0,-11.7402,-73.4341	0/0:145:145,0:145:5192:0:0:0,-43.6493,-173.609	0/1:120:65,55:65:2323:55:1972:-26.6312,0,-41.7916	0/1:143:90,53:90:3232:53:1896:-55.6725,0,-134.362	0/0:63:62,1:62:2228:1:36:0,-16.8783,-117.429	0/0:132:132,0:132:4740:0:0:0,-39.736,-160.406	0/0:126:126,0:126:4532:0:0:0,-37.9298,-152.686	0/1:67:39,28:39:1396:28:1008:-19.7553,0,-36.6096	0/0:100:100,0:100:3596:0:0:0,-30.103,-190.844	0/0:67:67,0:67:2412:0:0:0,-20.169,-98.2541	0/0:59:59,0:59:2106:0:0:0,-17.7608,-70.5475	0/0:47:47,0:47:1688:0:0:0,-14.1484,-61.1285	0/0:25:25,0:25:900:0:0:0,-7.52575,-30.4121	0/1:400:213,187:213:7620:187:6680:-230.35,0,-305.84	0/0:323:322,1:322:11529:1:36:0,-95.6369,-473.332	0/0:126:126,0:126:4520:0:0:0,-37.9298,-275.325	0/0:115:115,0:115:4124:0:0:0,-34.6184,-219.715	0/1:45:19,26:19:680:26:932:-23.2347,0,-21.4015	0/0:46:46,0:46:1656:0:0:0,-13.8474,-66.6674	0/0:416:416,0:416:14875:0:0:0,-125.228,-904.629	0/1:208:112,96:112:4013:96:3426:-75.2785,0,-104.52	0/0:54:54,0:54:1936:0:0:0,-16.2556,-79.9511	0/0:403:403,0:403:14381:0:0:0,-121.315,-877.057	0/0:67:67,0:67:2400:0:0:0,-20.169,-98.8839	0/0:118:118,0:118:4231:0:0:0,-35.5215,-229.969	0/0:4:4,0:4:144:0:0:0,-1.20412,-5.81273	1/1:5:0,5:0:0:5:180:-7.24943,-1.50515,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.39738	0/0:8:8,0:8:288:0:0:0,-2.40824,-10.0194	0/1:14:5,9:5:180:9:324:-6.42867,0,-2.12203	0/0:353:353,0:353:12668:0:0:0,-106.264,-767.621	0/1:120:54,66:54:1927:66:2338:-57.2287,0,-49.6477	0/1:55:34,21:34:1216:21:752:-8.01128,0,-24.1804	0/0:3:3,0:3:104:0:0:0,-0.90309,-4.64539	0/0:47:47,0:47:1676:0:0:0,-14.1484,-68.9738	0/1:24:18,6:18:644:6:216:-1.55211,0,-19.4058	0/0:123:123,0:123:4392:0:0:0,-37.0267,-180.453	0/0:87:87,0:87:3124:0:0:0,-26.1896,-167.017	0/1:85:59,26:59:2120:26:932:-24.2627,0,-89.711	0/1:92:40,52:40:1432:52:1830:-81.4092,0,-60.8164	0/0:89:89,0:89:3187:0:0:0,-26.7917,-108.726	0/0:235:233,2:233:8352:2:72:0,-66.8699,-448.882	0/0:99:99,0:99:3539:0:0:0,-29.802,-191.803	0/1:144:86,58:86:3065:58:2080:-65.3142,0,-122.59	0/1:56:31,25:31:1116:25:896:-35.6419,0,-50.8814	0/1:16:12,4:12:432:4:144:-2.90388,0,-17.8149	0/1:195:69,126:69:2472:126:4486:-92.2814,0,-24.7108	0/0:56:56,0:56:1997:0:0:0,-16.8577,-125.218	0/0:9:9,0:9:324:0:0:0,-2.70927,-11.0055	0/0:175:175,0:175:6288:0:0:0,-52.6802,-255.372	0/0:20:20,0:20:705:0:0:0,-6.0206,-37.8382	0/1:10:7,3:7:252:3:108:-3.63558,0,-13.1961	0/1:30:16,14:16:576:14:500:-19.9228,0,-27.4099	0/0:50:49,1:49:1756:1:36:0,-13.4557,-70.6198	0/0:123:123,0:123:4405:0:0:0,-37.0267,-238.06	0/1:4:3,1:3:108:1:36:-0.882465,0,-4.63832	0/0:386:386,0:386:13807:0:0:0,-116.198,-849.209	0/1:272:161,111:161:5763:111:3958:-122.595,0,-229.738	0/1:65:39,26:39:1400:26:917:-17.2873,0,-39.2928	0/0:76:76,0:76:2728:0:0:0,-22.8783,-151.19	0/0:278:278,0:278:9937:0:0:0,-83.6863,-539.149	0/1:159:58,101:58:2061:101:3575:-141.216,0,-69.934	0/0:34:34,0:34:1216:0:0:0,-10.235,-50.0491	0/1:28:18,10:18:648:10:360:-3.38239,0,-12.8171	0/0:65:65,0:65:2323:0:0:0,-19.5669,-142.559	0/1:19:16,3:16:572:3:108:-0.122868,0,-26.6872	0/1:41:25,16:25:896:16:576:-6.47786,0,-17.5269	0/1:84:45,39:45:1616:39:1400:-20.3981,0,-30.7374	0/0:144:143,1:143:5117:1:36:0,-41.7525,-208.534	0/1:227:137,90:137:4890:90:3217:-99.6233,0,-200.605	1/1:89:14,75:14:504:75:2677:-77.3745,-9.76673,0	0/1:118:82,36:82:2932:36:1280:-7.83005,0,-64.0529	0/0:39:38,0:38:1368:0:0:0,-11.4391,-46.2741	0/1:160:84,76:84:3001:76:2699:-60.2982,0,-76.4411	0/0:141:141,0:141:5064:0:0:0,-42.4452,-169.842	0/0:335:334,0:334:11947:0:0:0,-100.544,-648.469	0/1:83:54,29:54:1940:29:1040:-28.4599,0,-81.3815	0/0:81:81,0:81:2889:0:0:0,-24.3834,-157.838	0/1:69:47,22:47:1684:22:792:-20.752,0,-69.6405	0/1:157:96,61:96:3452:61:2192:-65.3706,0,-134.977	0/0:28:25,3:25:896:3:108:0,-4.79461,-28.5848	0/0:121:121,0:121:4340:0:0:0,-36.4246,-149.698	0/0:116:116,0:116:4160:0:0:0,-34.9195,-139.025	0/1:39:19,20:19:684:20:720:-16.6946,0,-15.6173	0/1:81:52,29:52:1856:29:1040:-16.7918,0,-53.3097	0/1:99:37,62:37:1332:62:2232:-86.1613,0,-43.0585	0/0:283:283,0:283:10145:0:0:0,-85.1915,-546.766	0/0:182:182,0:182:6532:0:0:0,-54.7875,-352.608
chr01	35569938	.	G	T	183131	PASS	AB=0.501397;ABP=3.07096;AC=142;AF=0.755319;AN=188;AO=7080;CIGAR=1X;DP=8881;DPB=8881;DPRA=38.5913;EPP=5537.66;EPPR=722.126;GTI=4;LEN=1;MEANALT=1.06522;MQM=59.911;MQMR=59.9872;NS=94;NUMALT=1;ODDS=3.84257;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253158;QR=64192;RO=1795;RPL=1416;RPP=5537.66;RPPR=722.126;RPR=5664;RUN=1;SAF=7080;SAP=15377;SAR=0;SRF=1795;SRP=3900.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:14,21:14:500:21:748:-57.1092,0,-34.8001	0/1:135:50,85:50:1792:85:3055:-234.539,0,-120.923	1/1:105:0,105:0:0:105:3755:-338.146,-31.6082,0	1/1:243:0,243:0:0:243:8697:-782.719,-73.1503,0	0/1:116:53,63:53:1904:63:2243:-167.213,0,-136.718	0/1:60:35,25:35:1252:25:883:-61.7246,0,-94.9233	1/1:186:0,186:0:0:186:6651:-598.665,-55.9916,0	1/1:82:0,82:0:0:82:2943:-265.103,-24.6845,0	0/1:109:63,46:63:2221:46:1640:-114.806,0,-167.339	0/1:88:39,49:39:1396:49:1760:-132.193,0,-99.4485	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:61:0,61:0:0:61:2156:-194.306,-18.3628,0	1/1:59:0,59:0:0:59:2124:-191.425,-17.7608,0	0/1:74:41,33:41:1472:33:1179:-84.141,0,-110.5	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:42:0,42:0:0:42:1492:-134.572,-12.6433,0	1/1:35:0,33:0:0:33:1180:-106.148,-9.93399,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:207:119,88:119:4250:88:3151:-221.5,0,-320.363	1/1:87:0,87:0:0:87:3115:-280.554,-26.1896,0	1/1:160:0,160:0:0:160:5717:-514.63,-48.1648,0	1/1:125:0,125:0:0:125:4477:-403.097,-37.6288,0	0/1:146:54,92:54:1936:92:3288:-252.19,0,-130.566	1/1:105:0,105:0:0:105:3776:-340.037,-31.6082,0	1/1:342:0,341:0:0:341:12201:-1097.72,-102.651,0	0/1:187:89,98:89:3200:98:3516:-260.357,0,-231.93	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:308:0,308:0:0:308:11062:-995.465,-92.7172,0	1/1:141:0,141:0:0:141:5068:-456.262,-42.4452,0	1/1:225:0,225:0:0:225:8054:-724.761,-67.7318,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:4:0,4:0:0:4:131:-12.1126,-1.20412,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:149:0,148:0:0:148:5291:-476.005,-44.5524,0	0/1:174:81,93:81:2892:93:3340:-248.436,0,-208.137	0/1:46:21,25:21:724:25:879:-65.5781,0,-51.6142	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:129:3,126:3:108:126:4507:-395.72,-28.7577,0	0/1:27:12,15:12:432:15:525:-39.3801,0,-31.0934	1/1:172:0,171:0:0:171:6085:-547.518,-51.4761,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:49:22,27:22:784:27:955:-71.5144,0,-56.1334	0/1:108:43,65:43:1529:65:2332:-177.606,0,-105.39	1/1:85:0,85:0:0:85:3047:-274.459,-25.5876,0	1/1:145:1,144:1:36:144:5129:-457.655,-40.0511,0	1/1:139:0,139:0:0:139:4972:-447.522,-41.8432,0	0/1:96:65,31:65:2336:31:1116:-71.8528,0,-181.6	0/1:216:115,101:115:4128:101:3624:-261.342,0,-306.681	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:130:62,68:62:2216:68:2444:-181.081,0,-160.571	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:101:0,101:0:0:101:3602:-324.387,-30.404,0	1/1:76:0,76:0:0:76:2692:-242.428,-22.8783,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:6,3:6:216:3:99:-6.52731,0,-17.0812	1/1:91:0,91:0:0:91:3204:-288.58,-27.3937,0	1/1:98:1,97:1:36:97:3488:-310.531,-25.9027,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:189:0,189:0:0:189:6776:-609.911,-56.8947,0	0/1:175:78,97:78:2796:97:3488:-261.441,0,-199.2	0/1:75:40,35:40:1440:35:1252:-90.3997,0,-107.32	1/1:106:0,106:0:0:106:3812:-342.42,-31.9092,0	1/1:186:0,186:0:0:186:6632:-596.022,-55.9916,0	0/1:101:73,28:73:2616:28:999:-59.8205,0,-205.284	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:73:43,30:43:1540:30:1069:-74.5458,0,-116.918	1/1:85:0,85:0:0:85:3041:-273.918,-25.5876,0	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:160:63,97:63:2248:97:3452:-262.727,0,-154.419	0/1:28:8,20:8:284:20:720:-56.6999,0,-17.4745	1/1:221:0,221:0:0:221:7888:-709.932,-66.5276,0	0/1:170:93,77:93:3321:77:2723:-194.137,0,-247.929	0/1:78:38,40:38:1364:40:1428:-105.337,0,-99.5804	0/1:86:37,49:37:1332:49:1756:-132.435,0,-94.2938	1/1:9:0,9:0:0:9:313:-28.5051,-2.70927,0	0/1:114:58,56:58:2084:56:1996:-145.597,0,-153.513	1/1:92:0,92:0:0:92:3282:-295.109,-27.6948,0	1/1:279:0,278:0:0:278:9925:-892.872,-83.6863,0	0/1:106:49,57:49:1760:57:2048:-152.399,0,-126.775	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:59:37,22:37:1305:22:784:-53.1231,0,-99.9886	0/1:101:45,56:45:1607:56:1992:-149.122,0,-114.515	0/1:40:21,19:21:737:19:684:-49.8491,0,-54.6094	1/1:61:0,61:0:0:61:2179:-196.375,-18.3628,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:22:12,10:12:419:10:360:-26.1216,0,-31.42	0/1:76:42,34:42:1504:34:1192:-84.7041,0,-112.776	0/1:52:34,18:34:1215:18:648:-42.9983,0,-94.0022	1/1:107:0,107:0:0:107:3817:-343.719,-32.2102,0	1/1:63:0,63:0:0:63:2249:-202.661,-18.9649,0
chr01	35594719	.	C	A	187795	PASS	AB=0.538793;ABP=57.5966;AC=146;AF=0.776596;AN=188;AO=8581;CIGAR=1X;DP=10518;DPB=10518;DPRA=56.5376;EPP=18213.2;EPPR=4109.71;GTI=2;LEN=1;MEANALT=1.06452;MQM=59.4287;MQMR=59.9767;NS=94;NUMALT=1;ODDS=0.0735937;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=306853;QR=69022;RO=1931;RPL=8532;RPP=18213.2;RPPR=4109.71;RPR=49;RUN=1;SAF=0;SAP=18636.4;SAR=8581;SRF=0;SRP=4196.12;SRR=1931;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:28,22:28:1004:22:784:-55.7607,0,-75.6244	0/1:181:69,112:69:2442:112:4009:-305.947,0,-165.545	1/1:123:0,123:0:0:123:4397:-395.749,-37.0267,0	1/1:208:1,207:1:36:207:7397:-661.544,-59.016,0	0/1:84:41,43:41:1472:43:1544:-113.886,0,-107.49	0/1:50:18,32:18:644:32:1148:-88.5067,0,-43.2391	1/1:179:0,179:0:0:179:6383:-574.496,-53.8844,0	1/1:210:0,210:0:0:210:7490:-673.292,-63.2163,0	0/1:116:56,60:56:2004:60:2148:-158.582,0,-145.714	0/1:126:55,71:55:1980:71:2540:-190.894,0,-140.545	1/1:38:0,38:0:0:38:1340:-120.87,-11.4391,0	1/1:98:0,98:0:0:98:3494:-314.515,-29.5009,0	1/1:84:0,84:0:0:84:3011:-270.933,-25.2865,0	0/1:60:28,32:28:1000:32:1148:-85.568,0,-72.2536	1/1:90:0,90:0:0:90:3221:-289.59,-27.0927,0	1/1:53:0,53:0:0:53:1876:-169.049,-15.9546,0	1/1:78:0,78:0:0:78:2796:-251.772,-23.4803,0	1/1:87:0,87:0:0:87:3120:-280.851,-26.1896,0	1/1:35:0,35:0:0:35:1249:-112.549,-10.5361,0	0/1:234:125,109:125:4435:109:3880:-278.859,0,-328.879	1/1:220:0,220:0:0:220:7874:-708.298,-66.2266,0	1/1:157:0,156:0:0:156:5584:-502.451,-46.9607,0	1/1:122:0,122:0:0:122:4380:-394.328,-36.7257,0	0/1:172:57,115:57:2052:115:4115:-318.667,0,-133.174	1/1:135:0,135:0:0:135:4832:-434.873,-40.6391,0	1/1:406:0,406:0:0:406:14525:-1306.78,-122.218,0	0/1:203:100,102:100:3596:102:3656:-268.148,0,-262.826	1/1:39:0,39:0:0:39:1400:-126.254,-11.7402,0	1/1:263:0,263:0:0:263:9413:-847.017,-79.1709,0	1/1:149:0,149:0:0:149:5345:-481.169,-44.8535,0	1/1:129:0,129:0:0:129:4618:-415.46,-38.8329,0	1/1:5:0,5:0:0:5:180:-16.5292,-1.50515,0	0/1:8:3,5:3:108:5:180:-14.121,0,-7.66693	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3127,-1.20412,0	1/1:280:0,280:0:0:280:10027:-902.222,-84.2884,0	0/1:301:138,163:138:4921:163:5824:-433.469,0,-352.431	0/1:62:20,42:20:697:42:1480:-114.718,0,-44.3868	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:192:2,190:2:72:190:6803:-604.483,-50.961,0	0/1:19:6,13:6:216:13:460:-35.9933,0,-14.0709	1/1:193:0,193:0:0:193:6916:-621.742,-58.0988,0	1/1:90:0,90:0:0:90:3224:-290.382,-27.0927,0	0/1:72:33,38:33:1188:38:1364:-101.314,0,-85.4956	0/1:59:33,26:33:1173:26:919:-65.2654,0,-88.1148	1/1:142:0,142:0:0:142:5088:-458.02,-42.7463,0	1/1:272:1,271:1:36:271:9682:-867.626,-78.2819,0	1/1:184:0,184:0:0:184:6581:-592.003,-55.3895,0	0/1:184:93,91:93:3344:91:3259:-238.086,0,-245.786	0/1:193:103,90:103:3696:90:3231:-232.911,0,-274.743	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:147:72,75:72:2565:75:2688:-197.841,0,-186.847	1/1:47:0,47:0:0:47:1672:-150.755,-14.1484,0	1/1:11:0,11:0:0:11:396:-35.965,-3.31133,0	1/1:126:0,126:0:0:126:4482:-403.432,-37.9298,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	1/1:58:0,58:0:0:58:2084:-187.696,-17.4597,0	1/1:109:0,109:0:0:109:3887:-350.007,-32.8123,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:242:0,242:0:0:242:8649:-778.216,-72.8493,0	0/1:217:99,118:99:3518:118:4236:-315.99,0,-251.492	0/1:47:22,25:22:784:25:896:-66.8119,0,-56.7293	1/1:75:0,75:0:0:75:2670:-240.47,-22.5773,0	1/1:227:1,226:1:36:226:8083:-723.698,-64.7355,0	0/1:109:62,46:62:2224:46:1648:-115.773,0,-167.592	1/1:12:0,12:0:0:12:421:-38.1861,-3.61236,0	0/1:81:34,47:34:1205:47:1676:-126.636,0,-84.3705	1/1:68:0,68:0:0:68:2429:-218.835,-20.47,0	0/1:18:7,11:7:248:11:396:-30.5642,0,-17.2457	0/1:119:58,61:58:2065:61:2184:-160.844,0,-150.297	0/1:76:28,48:28:1008:48:1718:-131.986,0,-68.1581	1/1:124:0,124:0:0:124:4440:-399.29,-37.3277,0	0/1:160:73,87:73:2611:87:3111:-232.049,0,-187.073	0/1:112:53,59:53:1881:59:2112:-156.426,0,-135.85	0/1:124:49,75:49:1756:75:2679:-203.848,0,-120.995	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:181:79,102:79:2836:102:3638:-273.132,0,-200.992	1/1:142:1,141:1:36:141:5048:-449.168,-39.148,0	1/1:266:0,265:0:0:265:9458:-850.738,-79.773,0	0/1:138:54,84:54:1928:84:2997:-228.341,0,-132.255	1/1:82:0,82:0:0:82:2931:-263.969,-24.6845,0	0/1:98:42,56:42:1508:56:2016:-151.901,0,-106.51	0/1:160:67,93:67:2393:93:3339:-252.491,0,-167.461	0/1:49:21,28:21:756:28:995:-74.6847,0,-53.6168	1/1:107:0,106:0:0:106:3787:-340.563,-31.9092,0	1/1:103:0,103:0:0:103:3655:-328.84,-31.0061,0	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	0/1:43:23,20:23:828:20:720:-52.162,0,-61.8998	0/1:85:51,34:51:1828:34:1224:-84.852,0,-139.213	1/1:106:0,106:0:0:106:3800:-342.184,-31.9092,0	1/1:116:0,116:0:0:116:4133:-372.09,-34.9195,0
chr01	35609146	.	G	A	25777.5	PASS	AB=0.531466;ABP=22.9616;AC=42;AF=0.223404;AN=188;AO=1239;CIGAR=1X;DP=5704;DPB=5704;DPRA=0.937221;EPP=2693.46;EPPR=9670.41;GTI=0;LEN=1;MEANALT=1.02174;MQM=59.6642;MQMR=59.9659;NS=94;NUMALT=1;ODDS=3.23559;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43550;QR=155671;RO=4460;RPL=983;RPP=929.311;RPPR=5671.11;RPR=256;RUN=1;SAF=983;SAP=929.311;SAR=256;SRF=3934;SRP=5657.83;SRR=526;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:20,18:20:690:18:640:-46.4902,0,-50.9802	0/1:84:42,42:42:1449:42:1441:-104.671,0,-105.413	0/0:174:174,0:174:6171:0:0:0,-52.3792,-555.466	0/0:115:115,0:115:4011:0:0:0,-34.6184,-361.182	0/1:29:12,17:12:413:17:597:-45.3262,0,-28.768	0/1:26:17,9:17:599:9:316:-20.9521,0,-46.4113	0/0:87:86,1:86:2984:1:36:0,-22.5913,-265.188	0/0:78:78,0:78:2741:0:0:0,-23.4803,-246.931	0/1:51:19,32:19:668:32:1131:-86.743,0,-45.0931	0/1:51:25,26:25:820:26:888:-64.8181,0,-58.7495	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:72:72,0:72:2505:0:0:0,-21.6742,-225.701	0/0:48:48,0:48:1702:0:0:0,-14.4494,-153.464	0/1:31:17,14:17:591:14:500:-36.0042,0,-44.1833	0/0:63:63,0:63:2209:0:0:0,-18.9649,-199.072	0/0:38:38,0:38:1338:0:0:0,-11.4391,-120.718	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:30:30,0:30:1054:0:0:0,-9.0309,-95.1692	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/1:133:65,68:65:2302:68:2414:-177.349,0,-167.401	0/0:82:82,0:82:2833:0:0:0,-24.6845,-255.208	0/0:99:99,0:99:3446:0:0:0,-29.802,-310.355	0/0:69:69,0:69:2402:0:0:0,-20.7711,-216.433	0/1:61:38,23:38:1360:23:820:-55.7597,0,-104.338	0/0:63:63,0:63:2204:0:0:0,-18.9649,-198.624	0/0:126:126,0:126:4301:0:0:0,-37.9298,-387.277	0/1:163:67,96:67:2335:96:3390:-256.231,0,-161.339	0/0:25:25,0:25:874:0:0:0,-7.52575,-78.9752	0/0:159:159,0:159:5554:0:0:0,-47.8638,-499.99	0/0:63:63,0:63:2176:0:0:0,-18.9649,-196.103	0/0:70:69,0:69:2443:0:0:0,-20.7711,-219.914	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:5:3,2:3:108:2:61:-4.28808,0,-8.57002	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/0:100:100,0:100:3538:0:0:0,-30.103,-318.631	0/1:61:27,34:27:960:34:1208:-90.6633,0,-68.3534	0/1:34:10,24:10:348:24:855:-67.0352,0,-21.4201	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:90:90,0:90:3156:0:0:0,-27.0927,-283.775	0/1:27:8,19:8:284:19:671:-52.588,0,-17.7755	0/0:130:128,2:128:4489:2:72:0,-32.2972,-397.345	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.666	0/1:28:15,13:15:519:13:464:-33.6687,0,-38.6079	0/1:62:16,46:16:546:46:1617:-127.065,0,-30.7789	0/0:89:89,0:89:3013:0:0:0,-26.7917,-271.399	0/0:103:103,0:103:3600:0:0:0,-31.0061,-324.212	0/0:57:57,0:57:1958:0:0:0,-17.1587,-176.492	0/1:89:44,45:44:1562:45:1593:-116.852,0,-114.079	0/1:114:60,54:60:2078:54:1875:-134.65,0,-152.968	0/1:10:2,8:2:72:8:270:-21.6174,0,-3.82642	0/1:106:53,53:53:1832:53:1881:-137.658,0,-133.246	0/0:43:43,0:43:1520:0:0:0,-12.9443,-137.093	0/0:7:7,0:7:225:0:0:0,-2.10721,-20.5648	0/0:100:99,0:99:3476:0:0:0,-29.802,-312.695	0/0:46:46,0:46:1619:0:0:0,-13.8474,-145.998	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:6:1,5:1:32:5:178:-14.5625,0,-1.39313	0/0:46:46,0:46:1627:0:0:0,-13.8474,-146.718	0/0:56:55,1:55:1920:1:36:0,-13.2594,-169.476	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:110:110,0:110:3787:0:0:0,-33.1133,-341.027	0/1:126:65,61:65:2240:61:2146:-155.474,0,-163.931	0/1:60:26,34:26:909:34:1203:-90.5132,0,-64.0616	0/0:64:64,0:64:2188:0:0:0,-19.2659,-197.178	0/0:106:104,2:104:3617:2:72:0,-25.0725,-318.815	0/1:93:21,72:21:734:72:2494:-196.483,0,-38.3846	0/0:32:32,0:32:1128:0:0:0,-9.63296,-101.828	0/1:63:23,38:23:820:38:1328:-101.094,0,-55.4001	0/0:22:22,0:22:756:0:0:0,-6.62266,-68.355	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/1:61:27,34:27:917:34:1204:-90.2978,0,-64.4726	0/1:53:17,36:17:569:36:1284:-99.8742,0,-35.5714	0/0:75:75,0:75:2547:0:0:0,-22.5772,-229.477	0/1:135:70,65:70:2475:65:2268:-162.393,0,-182.365	0/1:72:39,33:39:1370:33:1119:-79.3313,0,-101.923	0/1:74:39,35:39:1363:35:1225:-88.1569,0,-100.689	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:86:42,44:42:1471:44:1567:-115.432,0,-106.795	0/0:78:78,0:78:2730:0:0:0,-23.4803,-245.943	0/0:125:125,0:125:4387:0:0:0,-37.6287,-395.007	0/1:28:20,8:20:703:8:288:-17.8386,0,-55.1647	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.486	0/1:27:16,11:16:550:11:377:-26.1301,0,-41.6955	0/1:81:48,33:48:1676:33:1171:-81.3132,0,-126.74	0/1:8:2,6:2:57:6:212:-17.0166,0,-3.00507	0/0:52:52,0:52:1797:0:0:0,-15.6536,-162.007	0/0:67:66,0:66:2330:0:0:0,-19.868,-209.598	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:41:23,18:23:793:18:619:-43.688,0,-59.3426	0/1:49:18,31:18:635:31:1091:-83.7398,0,-42.7265	0/0:76:76,0:76:2667:0:0:0,-22.8783,-240.275	0/0:71:71,0:71:2494:0:0:0,-21.3731,-224.711
chr01	35609251	.	A	G	198824	PASS	AB=0.478672;ABP=18.4791;AC=145;AF=0.771277;AN=188;AO=7574;CIGAR=1X;DP=9633;DPB=9633;DPRA=0;EPP=16423.7;EPPR=4463.22;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9247;MQMR=59.9708;NS=94;NUMALT=1;ODDS=3.69021;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263315;QR=73070;RO=2058;RPL=2719;RPP=1311.08;RPPR=432.498;RPR=4855;RUN=1;SAF=2718;SAP=1313.53;SAR=4856;SRF=711;SRP=429.809;SRR=1347;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:13,30:13:468:30:1047:-81.5922,0,-29.5154	0/1:92:52,40:52:1868:40:1399:-98.5088,0,-140.705	1/1:154:1,153:1:36:153:5360:-478.871,-42.7603,0	1/1:145:0,145:0:0:145:5135:-462.283,-43.6494,0	0/1:42:19,23:19:680:23:809:-60.4864,0,-48.8859	0/1:38:21,17:21:756:17:596:-42.5026,0,-56.9281	1/1:58:0,58:0:0:58:1996:-179.908,-17.4597,0	1/1:105:0,105:0:0:105:3660:-329.6,-31.6082,0	0/1:92:38,54:38:1347:54:1916:-145.023,0,-93.8347	0/1:91:42,49:42:1504:49:1723:-127.958,0,-108.261	1/1:157:0,157:0:0:157:5437:-489.472,-47.2617,0	1/1:188:2,186:2:64:186:6402:-570.21,-50.5149,0	1/1:193:0,193:0:0:193:6698:-602.909,-58.0988,0	0/1:213:114,99:114:4025:99:3385:-240.744,0,-298.32	1/1:131:1,130:1:36:130:4461:-398.068,-35.8367,0	1/1:142:0,142:0:0:142:4822:-434.144,-42.7463,0	1/1:184:1,183:1:36:183:6361:-568.995,-51.7912,0	1/1:130:0,130:0:0:130:4469:-402.38,-39.1339,0	1/1:75:0,75:0:0:75:2593:-233.617,-22.5773,0	0/1:116:50,66:50:1788:66:2342:-176.119,0,-126.282	1/1:128:0,128:0:0:128:4444:-400.137,-38.5318,0	1/1:34:0,34:0:0:34:1170:-105.6,-10.235,0	1/1:49:0,49:0:0:49:1737:-156.611,-14.7505,0	0/1:46:23,23:23:819:23:812:-59.5535,0,-60.1842	1/1:66:1,65:1:36:65:2307:-204.286,-16.2697,0	1/1:216:2,214:2:72:214:7491:-667.318,-58.1858,0	0/1:166:84,82:84:3004:82:2841:-205.827,0,-220.621	1/1:68:0,68:0:0:68:2333:-210.226,-20.47,0	1/1:164:0,163:0:0:163:5702:-512.943,-49.0679,0	1/1:84:1,83:1:36:83:2918:-259.257,-21.6882,0	1/1:76:0,76:0:0:76:2675:-240.995,-22.8783,0	1/1:14:0,14:0:0:14:467:-42.3469,-4.21442,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:324:1,323:1:36:323:11186:-1003.06,-93.9354,0	0/1:86:49,37:49:1741:37:1298:-91.2286,0,-131.084	0/1:106:52,54:52:1846:54:1864:-135.637,0,-134.51	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:119:2,117:2:68:117:4025:-355.982,-29.3649,0	0/1:74:48,26:48:1706:26:905:-59.488,0,-131.548	1/1:81:1,80:1:36:80:2809:-249.444,-20.7852,0	1/1:136:0,136:0:0:136:4660:-419.57,-40.9401,0	0/1:133:72,61:72:2552:61:2080:-147.425,0,-189.891	0/1:80:50,30:50:1780:30:1048:-70.5449,0,-136.4	1/1:86:0,86:0:0:86:3022:-272.208,-25.8886,0	1/1:126:0,126:0:0:126:4415:-397.525,-37.9298,0	1/1:55:0,55:0:0:55:1912:-172.353,-16.5567,0	0/1:166:80,86:80:2836:86:2996:-219.812,0,-205.507	0/1:45:25,20:25:887:20:707:-50.4082,0,-66.6018	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:123:56,67:56:1957:67:2360:-175.63,0,-139.356	1/1:32:0,32:0:0:32:1100:-99.2996,-9.63296,0	1/1:15:0,15:0:0:15:523:-47.3938,-4.51545,0	1/1:137:0,137:0:0:137:4790:-431.242,-41.2411,0	1/1:32:0,32:0:0:32:1099:-99.2,-9.63296,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	1/1:82:0,82:0:0:82:2894:-260.696,-24.6845,0	1/1:201:0,201:0:0:201:6916:-622.524,-60.507,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	1/1:146:0,146:0:0:146:5099:-459.03,-43.9504,0	0/1:119:73,46:73:2565:46:1617:-109.992,0,-195.275	0/1:65:28,37:28:985:37:1310:-98.6331,0,-69.3946	1/1:60:0,60:0:0:60:2085:-187.918,-18.0618,0	1/1:132:0,132:0:0:132:4687:-421.989,-39.736,0	0/1:82:64,18:64:2283:18:631:-32.4257,0,-181.047	1/1:108:2,106:2:72:106:3583:-315.844,-25.6745,0	0/1:61:36,25:36:1296:25:874:-60.6124,0,-98.5811	1/1:171:0,171:0:0:171:5858:-527.316,-51.4761,0	0/1:22:9,13:9:324:13:464:-35.4748,0,-22.8832	0/1:68:40,28:40:1404:28:970:-67.1376,0,-106.184	0/1:85:37,48:37:1308:48:1680:-125.766,0,-92.4312	1/1:113:0,113:0:0:113:3985:-358.841,-34.0164,0	0/1:107:58,49:58:2075:49:1737:-124.401,0,-154.805	0/1:141:74,67:74:2610:67:2387:-172.642,0,-192.57	0/1:129:60,69:60:2120:69:2389:-176.419,0,-152.234	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:120:58,62:58:2045:62:2186:-160.88,0,-148.194	1/1:119:1,118:1:36:118:4164:-370.716,-32.2243,0	1/1:144:0,144:0:0:144:5095:-458.695,-43.3483,0	0/1:145:66,79:66:2368:79:2686:-198.335,0,-169.729	1/1:177:0,177:0:0:177:6123:-551.181,-53.2823,0	0/1:124:66,58:66:2329:58:1944:-137.902,0,-172.542	0/1:244:133,111:133:4726:111:3837:-272.078,0,-352.048	0/1:49:24,25:24:852:25:840:-61.1551,0,-62.2499	1/1:120:0,120:0:0:120:4160:-374.586,-36.1236,0	1/1:143:0,143:0:0:143:4917:-442.689,-43.0473,0	0/1:174:86,88:86:3039:88:3055:-222.797,0,-221.36	0/1:240:119,121:119:4223:121:4149:-301.35,0,-308.004	0/1:122:91,31:91:3242:31:1063:-59.2479,0,-255.276	1/1:56:0,56:0:0:56:1966:-177.211,-16.8577,0	1/1:215:1,214:1:36:214:7445:-666.511,-61.1232,0
chr01	35625836	.	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chr01	35626007	.	A	C	28999.3	PASS	AB=0.463764;ABP=46.759;AC=43;AF=0.228723;AN=188;AO=1785;CIGAR=1X;DP=9583;DPB=9583;DPRA=0.865581;EPP=3879.09;EPPR=16912.3;GTI=2;LEN=1;MEANALT=1.02174;MQM=60;MQMR=59.9991;NS=94;NUMALT=1;ODDS=1.215;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63891;QR=278886;RO=7787;RPL=1785;RPP=3879.09;RPPR=16912.3;RPR=0;RUN=1;SAF=0;SAP=3879.09;SAR=1785;SRF=0;SRP=16912.3;SRR=7787;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:31,19:31:1108:19:680:-46.4777,0,-84.9795	0/1:79:44,35:44:1580:35:1256:-89.5639,0,-118.71	0/0:196:194,0:194:6968:0:0:0,-58.3998,-626.881	0/0:229:226,0:226:8108:0:0:0,-68.0328,-729.374	0/1:15:11,4:11:392:4:140:-8.42913,0,-31.1046	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:123:123,0:123:4386:0:0:0,-37.0267,-394.911	0/1:115:84,31:84:2985:31:1112:-65.7729,0,-234.263	0/1:92:46,46:46:1644:46:1637:-119.923,0,-120.554	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:145:145,0:145:5187:0:0:0,-43.6493,-466.969	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/1:96:42,54:42:1512:54:1944:-146.337,0,-107.476	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:95:95,0:95:3385:0:0:0,-28.5978,-304.865	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:194:120,74:120:4297:74:2641:-179.535,0,-328.505	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.322	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.472	0/0:203:200,3:200:7153:3:108:0,-51.0339,-633.751	0/1:52:38,14:38:1364:14:500:-29.6826,0,-107.407	0/0:107:107,0:107:3821:0:0:0,-32.2102,-344.086	0/0:272:272,0:272:9748:0:0:0,-81.8802,-877.266	0/1:276:156,120:156:5588:120:4258:-300.315,0,-419.958	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.5	0/0:247:247,0:247:8864:0:0:0,-74.3544,-797.742	0/0:105:105,0:105:3733:0:0:0,-31.6081,-336.171	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:27:12,15:12:417:15:540:-40.8087,0,-29.7324	0/1:11:2,9:2:68:9:320:-25.831,0,-3.14638	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:51:21,30:21:756:30:1076:-81.8003,0,-53.0147	0/0:214:214,0:214:7671:0:0:0,-64.4204,-690.423	0/1:80:44,36:44:1580:36:1296:-92.8615,0,-118.409	0/1:73:37,36:37:1332:36:1273:-92.8957,0,-98.2072	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:116:116,0:116:4168:0:0:0,-34.9195,-375.301	0/1:50:22,28:22:773:28:1004:-75.6244,0,-54.838	0/0:164:164,0:164:5868:0:0:0,-49.3689,-528.231	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:82:39,43:39:1400:43:1540:-114.209,0,-101.615	0/1:72:44,28:44:1580:28:1008:-69.3622,0,-120.817	0/0:135:135,0:135:4836:0:0:0,-40.639,-435.394	0/0:144:144,0:144:5156:0:0:0,-43.3483,-464.181	0/0:110:110,0:110:3913:0:0:0,-33.1133,-352.364	0/1:140:60,80:60:2137:80:2865:-215.941,0,-150.452	0/1:69:39,30:39:1389:30:1080:-76.7422,0,-104.536	0/1:17:7,10:7:252:10:353:-26.9915,0,-17.9114	0/1:172:97,75:97:3488:75:2642:-186.248,0,-262.353	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:169:168,0:168:6008:0:0:0,-50.573,-540.506	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:17:15,2:15:532:2:72:-1.71921,0,-43.0956	0/0:78:77,0:77:2760:0:0:0,-23.1793,-248.282	0/0:110:108,2:108:3868:2:72:0,-26.2766,-341.478	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:204:204,0:204:7320:0:0:0,-61.4101,-658.847	0/1:148:80,68:80:2868:68:2429:-174.311,0,-213.804	0/1:43:28,15:28:1004:15:540:-35.9922,0,-77.7316	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:196:195,1:195:6984:1:36:0,-55.4036,-625.025	0/1:268:123,145:123:4389:145:5200:-387.462,0,-314.507	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:66:32,34:32:1148:34:1224:-90.5991,0,-83.7619	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:33:17,16:17:600:16:572:-41.8794,0,-44.3952	0/1:113:51,62:51:1832:62:2232:-167.127,0,-131.144	0/1:93:50,43:50:1792:43:1540:-110.897,0,-133.567	0/0:113:111,0:111:3964:0:0:0,-33.4143,-356.592	0/1:188:117,71:117:4192:71:2552:-173.336,0,-320.868	0/1:93:77,16:77:2764:16:568:-23.4561,0,-221.005	0/1:130:68,62:68:2448:62:2213:-160.299,0,-181.44	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:116:68,48:68:2444:48:1728:-120.886,0,-185.295	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/0:274:274,0:274:9793:0:0:0,-82.4822,-881.316	0/1:85:40,45:40:1425:45:1612:-119.783,0,-102.958	0/0:98:98,0:98:3505:0:0:0,-29.5009,-315.659	0/1:66:31,35:31:1112:35:1260:-93.8375,0,-80.5234	0/1:146:75,71:75:2685:71:2552:-185.98,0,-197.943	0/1:29:17,12:17:612:12:432:-30.4913,0,-46.6836	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:96:96,0:96:3443:0:0:0,-28.8989,-310.082	0/1:82:36,45:36:1288:45:1612:-120.627,0,-91.4804	0/1:174:79,95:79:2840:95:3408:-254.555,0,-203.458	0/1:103:39,64:39:1400:64:2300:-176.255,0,-95.2931	0/0:132:132,0:132:4721:0:0:0,-39.736,-425.048	0/0:148:147,0:147:5257:0:0:0,-44.2514,-472.906
chr01	35630683	.	A	C	5665.26	PASS	AB=0.300502;ABP=2551.12;AC=59;AF=0.31383;AN=188;AO=2253;CIGAR=1X;DP=10692;DPB=10692;DPRA=1.6321;EPP=4895.34;EPPR=18291.2;GTI=23;LEN=1;MEANALT=1.11688;MQM=24.4731;MQMR=57.7586;NS=94;NUMALT=1;ODDS=1.51273;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79831;QR=300203;RO=8426;RPL=2253;RPP=4895.34;RPPR=18291.2;RPR=0;RUN=1;SAF=2253;SAP=4895.34;SAR=0;SRF=8426;SRP=18299.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:94:61,33:61:2176:33:1168:-46.6487,0,-167.395	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.424	0/0:138:136,2:136:4860:2:71:0,-35.8025,-431.401	0/0:214:210,2:210:7478:2:54:0,-60.8642,-667.661	0/1:75:57,18:57:2029:18:631:-12.4296,0,-160.198	0/1:37:19,18:19:656:18:648:-29.0427,0,-48.1045	0/0:48:48,0:48:1720:0:0:0,-14.4494,-154.883	0/1:317:223,93:223:7967:93:3268:-113.251,0,-621.182	0/1:123:87,36:87:3108:36:1277:-44.9094,0,-242.839	0/1:101:80,21:80:2857:21:734:-17.0723,0,-226.113	0/1:92:71,21:71:2540:21:744:-19.5257,0,-200.712	0/0:115:115,0:115:4136:0:0:0,-34.6184,-372.331	0/1:112:81,31:81:2889:31:1098:-35.4164,0,-226.466	0/1:81:62,19:62:2205:19:676:-12.9473,0,-174.057	0/1:78:57,21:57:2040:21:741:-22.7768,0,-160.332	0/1:82:59,23:59:2104:23:823:-19.8204,0,-164.412	0/1:43:29,14:29:1044:14:493:-18.5758,0,-81.3081	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2075	0/1:44:30,14:30:1076:14:500:-17.5631,0,-83.7998	0/1:234:154,80:154:5477:80:2848:-112.502,0,-421.285	0/1:219:159,60:159:5652:60:2110:-51.0727,0,-441.421	0/1:188:109,79:109:3893:79:2827:-123.979,0,-292.452	0/0:128:128,0:128:4554:0:0:0,-38.5318,-409.358	0/1:69:42,27:42:1489:27:944:-31.7303,0,-113.149	0/0:106:104,2:104:3720:2:63:0,-28.8168,-331.484	0/1:325:222,102:222:7822:102:3640:-135.137,0,-601.704	0/0:228:227,0:227:8101:0:0:0,-68.3338,-726.941	0/1:52:40,12:40:1423:12:411:-7.60084,0,-112.67	0/1:407:295,112:295:10494:112:3968:-124.595,0,-815.533	0/1:160:115,45:115:4084:45:1616:-39.9193,0,-319.508	0/1:75:53,21:53:1888:21:752:-25.4279,0,-145.533	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:21:14,7:14:500:7:252:-7.65053,0,-39.0141	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:9:5,4:5:180:4:144:-6.75794,0,-13.8428	0/0:16:14,2:14:504:2:68:0,-0.510707,-41.3923	0/1:256:185,71:185:6596:71:2512:-82.5618,0,-513.05	0/1:230:163,66:163:5807:66:2339:-58.0478,0,-453.033	0/1:60:51,9:51:1819:9:311:-2.20172,0,-145.446	0/1:4:1,3:1:36:3:108:-4.9087,0,-2.39415	0/0:100:100,0:100:3534:0:0:0,-30.103,-318.179	0/1:40:26,14:26:928:14:496:-15.6407,0,-71.7612	0/1:250:144,106:144:5149:106:3779:-131.491,0,-388.22	0/1:76:47,27:47:1680:27:949:-36.0641,0,-128.768	0/1:81:57,24:57:1999:24:847:-29.6376,0,-154.237	0/0:128:127,0:127:4521:0:0:0,-38.2308,-405.323	0/1:224:168,56:168:5986:56:2003:-60.2384,0,-471.216	0/0:160:159,1:159:5664:1:36:0,-46.0782,-507.524	0/1:162:113,49:113:4025:49:1722:-60.2707,0,-313.349	0/1:197:148,49:148:5288:49:1739:-50.7025,0,-416.523	0/0:120:117,3:117:4172:3:97:0,-30.9537,-367.164	0/1:12:7,5:7:252:5:171:-7.96253,0,-19.4059	0/0:124:122,2:122:4352:2:71:0,-33.9229,-388.28	0/0:19:18,1:18:632:1:36:0,-3.16086,-54.5452	0/1:12:9,3:9:324:3:93:-3.01329,0,-25.8935	0/1:264:191,73:191:6821:73:2590:-63.0044,0,-534.138	0/1:94:67,27:67:2375:27:962:-32.2031,0,-185.465	0/1:15:9,6:9:316:6:212:-9.50628,0,-24.2147	0/1:28:22,6:22:784:6:204:-4.69031,0,-62.3439	0/1:92:62,30:62:2232:30:1072:-30.7071,0,-173.412	0/1:144:112,31:112:4011:31:1091:-25.4551,0,-315.896	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83588	0/1:297:197,100:197:6978:100:3560:-139.558,0,-535.5	0/1:169:122,47:122:4346:47:1650:-56.2527,0,-339.62	0/1:56:41,15:41:1460:15:517:-11.7766,0,-114.838	0/0:90:90,0:90:3200:0:0:0,-27.0927,-286.9	0/1:227:144,82:144:5129:82:2914:-116.304,0,-391.871	0/1:250:175,75:175:6174:75:2659:-92.1066,0,-479.182	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.277	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6482	0/1:54:34,20:34:1205:20:702:-27.3719,0,-91.6193	0/1:24:18,6:18:635:6:216:-6.84817,0,-50.2456	0/0:128:127,1:127:4544:1:36:0,-36.9361,-407.214	0/1:161:115,46:115:4113:46:1629:-55.5336,0,-321.737	0/0:148:146,2:146:5221:2:72:0,-39.3808,-464.607	0/0:198:198,0:198:7067:0:0:0,-59.6039,-635.64	0/1:173:116,57:116:4081:57:2031:-72.5785,0,-314.995	0/0:102:101,1:101:3600:1:36:0,-29.0104,-322.507	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:102:98,4:98:3516:4:144:0,-23.6249,-309.444	0/1:223:151,72:151:5365:72:2567:-95.9325,0,-414.687	0/0:211:208,3:208:7416:3:108:0,-58.2255,-661.077	0/1:82:53,28:53:1896:28:1004:-38.6336,0,-146.077	0/0:59:56,3:56:1991:3:101:0,-12.4126,-173.855	0/1:60:41,19:41:1468:19:678:-24.8448,0,-114.14	0/0:144:140,4:140:5003:4:135:0,-35.8589,-442.419	0/1:29:18,11:18:648:11:386:-15.9489,0,-49.9189	0/1:97:68,29:68:2431:29:1036:-37.7374,0,-189.321	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.013	0/0:47:46,1:46:1644:1:36:0,-12.0618,-146.081	0/1:127:95,32:95:3395:32:1102:-22.5361,0,-267.163	0/1:63:53,10:53:1836:10:360:-1.95342,0,-146.391	0/0:124:123,1:123:4384:1:36:0,-35.2411,-391.991	0/0:85:82,3:82:2928:3:107:0,-20.2042,-258.073
chr01	35695069	.	A	T	93860.6	PASS	AB=0.443902;ABP=70.2518;AC=146;AF=0.776596;AN=188;AO=4405;CIGAR=1X;DP=5791;DPB=5791;DPRA=15.5565;EPP=9568.35;EPPR=3006.16;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.983;MQMR=59.9993;NS=94;NUMALT=1;ODDS=1.01;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157445;QR=49376;RO=1383;RPL=0;RPP=9568.35;RPPR=3006.16;RPR=4405;RUN=1;SAF=4405;SAP=9568.35;SAR=0;SRF=1383;SRP=3006.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:23,24:23:828:24:844:-62.1305,0,-60.6957	0/1:54:33,21:33:1184:21:752:-51.7506,0,-90.6127	1/1:107:0,107:0:0:107:3818:-343.588,-32.2102,0	1/1:138:0,138:0:0:138:4937:-444.479,-41.5421,0	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/1:16:2,14:2:72:14:504:-40.8816,0,-2.02024	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:118:0,118:0:0:118:4189:-377.193,-35.5215,0	0/1:89:51,38:51:1817:38:1368:-96.6292,0,-137.018	0/1:54:21,33:21:756:33:1179:-90.1616,0,-52.1116	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	0/1:45:21,24:21:748:24:860:-64.1755,0,-54.0989	1/1:56:0,56:0:0:56:2001:-180.362,-16.8577,0	1/1:52:0,52:0:0:52:1859:-167.589,-15.6536,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:141:77,64:77:2753:64:2296:-164.456,0,-205.565	1/1:113:0,113:0:0:113:4037:-363.517,-34.0164,0	1/1:50:0,50:0:0:50:1792:-161.56,-15.0515,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/1:47:26,21:26:932:21:756:-54.2188,0,-70.0505	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:189:0,189:0:0:189:6767:-609.1,-56.8947,0	0/1:161:80,81:80:2857:81:2906:-213.309,0,-208.9	1/1:29:0,29:0:0:29:1044:-94.2702,-8.72987,0	1/1:133:0,133:0:0:133:4756:-428.196,-40.037,0	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:32:24,8:24:864:8:288:-16.6344,0,-68.4496	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	1/1:125:2,123:2:57:123:4395:-390.308,-32.2154,0	0/1:98:54,44:54:1928:44:1576:-112.631,0,-144.295	0/1:32:12,20:12:432:20:720:-55.4958,0,-29.5882	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:66:3,63:3:104:63:2252:-193.24,-10.1652,0	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	1/1:127:0,127:0:0:127:4526:-407.506,-38.2308,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:47:24,23:24:849:23:828:-60.6957,0,-62.5794	0/1:98:49,49:49:1749:49:1749:-128.191,0,-128.191	1/1:50:0,50:0:0:50:1777:-160.203,-15.0515,0	1/1:124:1,123:1:36:123:4341:-387.267,-33.7294,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:50:23,27:23:824:27:953:-71.0318,0,-59.4318	0/1:72:27,45:27:968:45:1599:-122.525,0,-65.7632	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:75:48,27:48:1724:27:953:-63.5061,0,-132.868	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:102:0,100:0:0:100:3550:-319.348,-30.103,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:91:0,91:0:0:91:3272:-294.699,-27.3937,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:83:1,82:1:21:82:2944:-263.093,-22.8855,0	0/1:145:75,70:75:2664:70:2512:-182.683,0,-196.355	0/1:31:11,20:11:396:20:716:-55.4358,0,-26.6508	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:101:2,99:2:72:99:3544:-312.332,-23.5673,0	0/1:112:76,36:76:2728:36:1277:-81.5157,0,-212.047	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:59:26,33:26:917:33:1188:-89.4645,0,-65.0838	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:105:66,39:66:2372:39:1400:-94.691,0,-182.13	0/1:41:24,17:24:849:17:612:-43.0712,0,-64.3856	1/1:95:1,94:1:21:94:3361:-300.602,-26.4979,0	0/1:130:86,44:86:3043:44:1550:-100.654,0,-234.963	0/1:123:85,38:85:3025:38:1345:-84.3215,0,-235.453	0/1:58:29,29:29:1044:29:1036:-76.0942,0,-76.8151	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:75:50,25:50:1796:25:877:-56.668,0,-139.345	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:123:0,123:0:0:123:4397:-395.902,-37.0267,0	0/1:52:31,21:31:1112:21:752:-52.3527,0,-84.7378	1/1:42:0,42:0:0:42:1493:-134.654,-12.6433,0	0/1:34:20,14:20:705:14:504:-35.4631,0,-53.5378	0/1:97:49,48:49:1745:48:1716:-125.526,0,-128.132	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:46:1,45:1:36:45:1620:-142.492,-10.2491,0	1/1:50:0,49:0:0:49:1756:-157.964,-14.7505,0	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/1:64:43,21:43:1540:21:752:-48.7403,0,-119.627	0/1:66:47,19:47:1688:19:684:-42.0223,0,-132.339	1/1:132:0,132:0:0:132:4691:-422.349,-39.736,0	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0
chr01	35695325	.	C	T	198956	PASS	AB=0.491595;ABP=5.23682;AC=143;AF=0.760638;AN=188;AO=7298;CIGAR=1X;DP=9158;DPB=9158;DPRA=24.6075;EPP=685.038;EPPR=124.187;GTI=5;LEN=1;MEANALT=1.02151;MQM=59.7842;MQMR=59.9327;NS=94;NUMALT=1;ODDS=0.712114;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=260141;QR=65660;RO=1858;RPL=7298;RPP=15850.4;RPPR=4028.92;RPR=0;RUN=1;SAF=4406;SAP=685.038;SAR=2892;SRF=1089;SRP=122.687;SRR=769;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:24,22:24:860:22:780:-56.6743,0,-63.8745	0/1:96:42,54:42:1487:54:1925:-144.595,0,-105.225	1/1:147:0,147:0:0:147:5183:-466.595,-44.2514,0	1/1:165:0,165:0:0:165:5899:-530.993,-49.67,0	0/1:61:29,32:29:1019:32:1148:-85.267,0,-73.6585	0/1:42:22,20:22:788:20:701:-50.7685,0,-58.6015	1/1:52:0,52:0:0:52:1855:-167.227,-15.6536,0	1/1:144:0,143:0:0:143:5106:-459.273,-43.0473,0	0/1:78:38,40:38:1348:40:1418:-104.427,0,-98.1399	0/1:63:26,37:26:923:37:1319:-99.7738,0,-64.4209	1/1:83:0,83:0:0:83:2942:-265.012,-24.9855,0	1/1:176:0,176:0:0:176:6257:-563.195,-52.9813,0	1/1:191:1,190:1:36:190:6768:-605.59,-53.8985,0	0/1:131:70,61:70:2482:61:2171:-156.212,0,-184.194	1/1:188:0,188:0:0:188:6716:-604.383,-56.5936,0	1/1:140:0,140:0:0:140:4933:-444.123,-42.1442,0	1/1:102:0,102:0:0:102:3631:-326.908,-30.7051,0	1/1:120:0,120:0:0:120:4304:-387.519,-36.1236,0	1/1:55:1,54:1:36:54:1927:-170.1,-12.9584,0	0/1:141:76,65:76:2642:65:2328:-167.319,0,-195.582	1/1:130:0,130:0:0:130:4610:-414.979,-39.1339,0	1/1:47:0,47:0:0:47:1667:-150.317,-14.1484,0	1/1:94:0,94:0:0:94:3361:-302.701,-28.2968,0	0/1:77:29,48:29:1032:48:1712:-131.182,0,-70.0142	1/1:63:0,63:0:0:63:2244:-202.218,-18.9649,0	1/1:187:0,187:0:0:187:6680:-600.629,-56.2926,0	0/1:174:101,73:101:3575:73:2612:-182.949,0,-269.574	1/1:82:0,82:0:0:82:2913:-262.405,-24.6845,0	1/1:160:0,160:0:0:160:5723:-515.172,-48.1648,0	1/1:70:0,70:0:0:70:2491:-224.443,-21.0721,0	1/1:68:0,68:0:0:68:2436:-219.435,-20.47,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:7:2,5:2:54:5:180:-14.4449,0,-3.02238	1/1:398:0,398:0:0:398:14216:-1278.99,-119.81,0	0/1:67:32,35:32:1140:35:1249:-92.5448,0,-82.7402	0/1:65:27,38:27:959:38:1368:-103.846,0,-67.0584	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:127:3,124:3:104:124:4436:-389.698,-28.528,0	0/1:56:32,24:32:1152:24:864:-61.2157,0,-87.1325	1/1:96:1,95:1:36:95:3394:-302.063,-25.3006,0	1/1:156:0,156:0:0:156:5600:-504.088,-46.9607,0	0/1:129:59,70:59:2100:70:2491:-185.601,0,-150.437	0/1:78:38,40:38:1341:40:1436:-106.057,0,-97.5077	1/1:94:1,93:1:36:93:3312:-294.698,-24.6985,0	1/1:113:0,113:0:0:113:4016:-361.629,-34.0164,0	1/1:51:0,51:0:0:51:1832:-165.156,-15.3525,0	0/1:77:41,36:41:1447:36:1283:-92.5796,0,-107.346	0/1:89:49,40:49:1722:40:1428:-102.026,0,-128.202	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/1:139:70,69:70:2473:69:2459:-179.721,0,-180.98	1/1:22:0,22:0:0:22:792:-71.6011,-6.62266,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:102:0,102:0:0:102:3599:-323.891,-30.7051,0	1/1:38:1,37:1:27:37:1319:-116.293,-8.73936,0	0/1:4:1,3:1:36:3:100:-8.12632,0,-2.39415	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	1/1:173:0,173:0:0:173:6192:-557.337,-52.0782,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:86:0,86:0:0:86:3092:-278.493,-25.8886,0	0/1:104:46,58:46:1630:58:2084:-156.521,0,-115.68	0/1:76:17,59:17:599:59:2090:-165.476,0,-31.3598	1/1:42:0,42:0:0:42:1485:-133.943,-12.6433,0	1/1:126:1,125:1:36:125:4454:-397.427,-34.3315,0	0/1:124:91,33:91:3207:33:1158:-66.7395,0,-251.526	1/1:61:1,60:1:36:60:2127:-188.099,-14.7646,0	0/1:65:36,29:36:1258:29:1032:-73.6265,0,-93.9538	1/1:165:0,165:0:0:165:5890:-530.099,-49.67,0	0/1:9:2,7:2:64:7:252:-20.3197,0,-3.36942	0/1:66:31,35:31:1072:35:1260:-93.8375,0,-76.9168	0/1:66:32,34:32:1152:34:1216:-89.8622,0,-84.1222	1/1:108:0,108:0:0:108:3866:-348.129,-32.5112,0	0/1:135:62,73:62:2186:73:2600:-193.61,0,-156.366	0/1:88:44,44:44:1555:44:1571:-115.145,0,-113.75	0/1:105:55,50:55:1964:50:1780:-128.867,0,-145.424	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:124:60,64:60:2107:64:2287:-168.653,0,-152.568	1/1:123:0,123:0:0:123:4403:-396.442,-37.0267,0	1/1:138:0,138:0:0:138:4901:-441.236,-41.5421,0	0/1:146:88,58:88:3097:58:2058:-141.509,0,-233.813	1/1:130:0,130:0:0:130:4635:-416.884,-39.1339,0	0/1:175:76,99:76:2685:99:3543:-266.364,0,-189.215	0/1:294:152,141:152:5361:141:5055:-366.447,0,-394.058	0/1:52:27,25:27:968:25:892:-64.938,0,-71.7838	1/1:140:0,140:0:0:140:4962:-446.651,-42.1442,0	1/1:138:0,138:0:0:138:4855:-437.076,-41.5421,0	0/1:78:37,41:37:1295:41:1449:-107.22,0,-93.3668	0/1:127:63,64:63:2243:64:2263:-165.699,0,-163.902	0/1:151:106,45:106:3767:45:1599:-98.7416,0,-293.755	1/1:115:0,115:0:0:115:4110:-369.998,-34.6185,0	1/1:253:0,253:0:0:253:9023:-811.957,-76.1606,0
chr01	35703026	.	G	A	14535	PASS	AB=0.566599;ABP=97.5901;AC=44;AF=0.234043;AN=188;AO=1400;CIGAR=1X;DP=5165;DPB=5165;DPRA=1.09948;EPP=3043.07;EPPR=8176.43;GTI=3;LEN=1;MEANALT=1;MQM=28.9329;MQMR=55.0704;NS=94;NUMALT=1;ODDS=0.439033;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50114;QR=134336;RO=3764;RPL=0;RPP=3043.07;RPPR=8176.43;RPR=1400;RUN=1;SAF=1400;SAP=3043.07;SAR=0;SRF=3764;SRP=8176.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:11,8:11:396:8:288:-14.2547,0,-30.2156	0/1:141:59,82:59:2108:82:2925:-159.722,0,-147.239	0/0:77:77,0:77:2715:0:0:0,-23.1793,-243.731	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.33	0/1:22:10,12:10:356:12:432:-23.6652,0,-25.6958	0/1:44:21,23:21:756:23:824:-43.5939,0,-55.0515	0/0:88:88,0:88:3114:0:0:0,-26.4906,-279.766	0/0:95:95,0:95:3385:0:0:0,-28.5978,-304.439	0/1:47:22,25:22:792:25:881:-46.97,0,-57.3835	0/1:64:27,37:27:968:37:1324:-75.3661,0,-68.0211	0/0:49:49,0:49:1748:0:0:0,-14.7505,-156.864	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.2767	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.4019	0/1:92:51,41:51:1836:41:1476:-76.1498,0,-137.473	0/0:40:40,0:40:1432:0:0:0,-12.0412,-128.902	0/0:35:35,0:35:1230:0:0:0,-10.536,-110.685	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.137	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.0692	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.4708	0/1:101:45,56:45:1612:56:1961:-112.228,0,-114.567	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.148	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4676	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.5523	0/1:75:38,37:38:1349:37:1327:-68.8684,0,-98.4639	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.2754	0/0:181:181,0:181:6466:0:0:0,-54.4864,-581.631	0/1:156:62,94:62:2212:94:3380:-187.089,0,-151.26	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.6165	0/0:98:98,0:98:3520:0:0:0,-29.5009,-316.643	0/0:86:86,0:86:3049:0:0:0,-25.8886,-274.152	0/0:58:58,0:58:2053:0:0:0,-17.4597,-184.866	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/1:6:1,5:1:36:5:180:-10.7803,0,-1.78699	0/1:5:2,3:2:72:3:108:-6.15622,0,-5.32453	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2999	0/1:4:3,1:3:93:1:36:-1.53208,0,-7.35941	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.281	0/1:77:39,38:39:1389:38:1368:-71.7207,0,-101.833	0/1:41:15,26:15:536:26:936:-52.7081,0,-36.1875	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/0:78:75,3:75:2684:3:108:0,-15.819,-233.822	0/1:28:8,20:8:288:20:720:-41.0964,0,-17.806	0/0:63:63,0:63:2249:0:0:0,-18.9649,-201.925	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.046	0/1:49:22,27:22:788:27:972:-54.9455,0,-56.3999	0/1:41:15,26:15:540:26:932:-59.1617,0,-36.5806	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.364	0/0:92:92,0:92:3266:0:0:0,-27.6948,-293.677	0/0:34:33,0:33:1188:0:0:0,-9.93399,-106.796	0/1:104:49,55:49:1752:55:1948:-110.374,0,-126.502	0/1:55:19,36:19:680:36:1292:-82.6115,0,-44.9004	0/1:9:6,3:6:216:3:108:-5.41847,0,-17.067	0/1:59:33,26:33:1188:26:932:-46.9272,0,-89.3607	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.1758	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7106	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.344	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.3883	1/1:4:0,4:0:0:4:144:-11.3018,-1.20412,0	0/1:11:6,5:6:216:5:180:-10.4603,0,-16.4185	0/0:38:38,0:38:1368:0:0:0,-11.4391,-122.652	0/0:58:56,2:56:2008:2:72:0,-11.9445,-175.042	0/1:7:2,5:2:72:5:180:-11.0923,0,-4.72458	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.399	0/1:142:58,84:58:2076:84:3020:-175.681,0,-143.77	0/1:76:29,47:29:1044:47:1692:-92.9766,0,-71.2676	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.089	0/0:78:78,0:78:2736:0:0:0,-23.4803,-246.205	0/1:58:13,45:13:468:45:1567:-97.1146,0,-24.9573	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.6624	0/1:43:17,26:17:604:26:936:-51.8941,0,-41.2041	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.443	0/1:27:8,19:8:284:19:684:-41.7997,0,-17.7557	0/1:80:38,42:38:1368:42:1500:-78.6525,0,-99.205	0/1:51:27,24:27:972:24:864:-43.9438,0,-71.8376	0/0:156:156,0:156:5528:0:0:0,-46.9607,-496.366	0/1:60:32,28:32:1148:28:1008:-54.8475,0,-85.4897	0/1:89:32,57:32:1136:57:2048:-113.852,0,-75.5533	0/1:109:38,71:38:1364:71:2548:-142.308,0,-90.0205	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.651	0/1:61:23,38:23:828:38:1368:-75.4098,0,-56.3775	0/0:52:52,0:52:1864:0:0:0,-15.6536,-167.659	0/0:76:76,0:76:2697:0:0:0,-22.8783,-242.415	0/1:65:29,36:29:1044:36:1296:-74.4722,0,-74.6376	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.78	0/1:56:25,31:25:892:31:1112:-62.4517,0,-63.3122	0/1:95:41,54:41:1468:54:1917:-109.713,0,-103.707	0/1:22:12,10:12:424:10:360:-18.2768,0,-31.8408	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.398	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.357	0/1:43:21,22:21:752:22:792:-41.9674,0,-54.8435	0/1:75:39,36:39:1396:36:1292:-66.7345,0,-103.068	0/1:46:16,30:16:572:30:1076:-63.6692,0,-37.7153	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.44	0/0:69:69,0:69:2452:0:0:0,-20.7711,-220.756
chr01	35703051	.	A	G	39457.3	PASS	AB=0.560506;ABP=123.624;AC=44;AF=0.234043;AN=188;AO=2139;CIGAR=1X;DP=8538;DPB=8538;DPRA=0.969216;EPP=348.059;EPPR=341.053;GTI=0;LEN=1;MEANALT=1;MQM=34.352;MQMR=52.6468;NS=94;NUMALT=1;ODDS=2.87508;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76317;QR=226525;RO=6398;RPL=22;RPP=4458.67;RPPR=13473.7;RPR=2117;RUN=1;SAF=1383;SAP=402.107;SAR=756;SRF=3747;SRP=410.701;SRR=2651;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:11,8:11:396:8:273:-13.6026,0,-29.4353	0/1:140:59,81:59:2108:81:2896:-157.992,0,-147.611	0/0:77:77,0:77:2698:0:0:0,-23.1793,-242.213	0/0:175:175,0:175:6207:0:0:0,-52.6802,-555.908	0/1:40:23,17:23:828:17:600:-33.9725,0,-62.422	0/1:43:20,23:20:720:23:824:-43.895,0,-52.1174	0/0:172:172,0:172:6067:0:0:0,-51.7772,-543.51	0/0:95:95,0:95:3349:0:0:0,-28.5978,-301.222	0/1:47:22,25:22:792:25:896:-47.616,0,-57.3835	0/1:113:54,59:54:1908:59:2103:-130.355,0,-136.664	0/0:75:75,0:75:2680:0:0:0,-22.5772,-240.267	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.229	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.4932	0/1:121:64,57:64:2284:57:2048:-116.715,0,-168.34	0/0:83:83,0:83:2933:0:0:0,-24.9855,-262.846	0/0:60:60,0:60:2160:0:0:0,-18.0618,-193.786	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.223	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.246	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.4708	0/1:207:90,117:90:3176:117:4174:-272.154,0,-222.373	0/0:137:137,0:137:4773:0:0:0,-41.2411,-426.673	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.106	0/0:77:77,0:77:2728:0:0:0,-23.1793,-244.202	0/1:125:54,71:54:1879:71:2540:-160.21,0,-129.658	0/0:94:93,0:93:3300:0:0:0,-27.9958,-294.161	0/0:287:287,0:287:10151:0:0:0,-86.3956,-911.131	0/1:320:149,171:149:5261:171:6104:-379.811,0,-374.055	0/0:38:38,0:38:1356:0:0:0,-11.4391,-121.725	0/0:241:241,0:241:8549:0:0:0,-72.5482,-767.358	0/0:118:115,3:115:4060:3:108:0,-25.5857,-353.981	0/0:108:108,0:108:3790:0:0:0,-32.5112,-339.344	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.079	0/1:25:4,21:4:136:21:752:-54.7049,0,-4.99262	0/1:5:2,3:2:72:3:108:-6.15622,0,-5.32453	0/0:5:5,0:5:168:0:0:0,-1.50515,-15.438	0/1:4:3,1:3:108:1:36:-1.53208,0,-8.75785	0/0:211:211,0:211:7506:0:0:0,-63.5173,-673.76	0/1:121:51,70:51:1785:70:2492:-158.046,0,-124.049	0/1:41:16,25:16:557:25:896:-48.835,0,-37.965	0/1:6:3,3:3:108:3:104:-7.78457,0,-8.23628	0/0:146:143,3:143:5060:3:108:0,-36.289,-445.143	0/1:47:15,32:15:540:32:1144:-73.3237,0,-34.5981	0/0:152:152,0:152:5377:0:0:0,-45.7566,-480.592	0/0:68:68,0:68:2401:0:0:0,-20.47,-215.627	0/1:80:36,44:36:1280:44:1572:-99.0722,0,-90.8343	0/1:114:46,68:46:1624:68:2425:-169.393,0,-111.858	0/0:69:69,0:69:2448:0:0:0,-20.7711,-219.781	0/0:153:153,0:153:5416:0:0:0,-46.0576,-484.367	0/0:81:81,0:81:2892:0:0:0,-24.3834,-259.522	0/1:158:69,89:69:2426:89:3189:-201.833,0,-170.66	0/1:160:68,92:68:2409:92:3288:-226.119,0,-167.861	0/1:13:8,5:8:275:5:180:-10.6275,0,-21.1559	0/1:58:32,26:32:1113:26:932:-47.2282,0,-82.9249	0/0:51:51,0:51:1787:0:0:0,-15.3525,-160.692	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6275	0/0:139:139,0:139:4893:0:0:0,-41.8432,-437.238	0/0:55:55,0:55:1943:0:0:0,-16.5566,-174.199	0/1:17:3,14:3:108:14:504:-38.0438,0,-4.93233	0/1:19:8,11:8:275:11:396:-27.1767,0,-19.2588	0/0:83:83,0:83:2952:0:0:0,-24.9855,-263.55	0/0:107:104,3:104:3678:3:108:0,-24.0825,-320.794	0/1:9:3,6:3:108:6:201:-13.0401,0,-7.34685	0/0:137:137,0:137:4862:0:0:0,-41.2411,-436.733	0/1:208:92,116:92:3280:116:4143:-254.575,0,-231.76	0/1:101:43,58:43:1532:58:2072:-120.043,0,-107.362	0/0:77:77,0:77:2706:0:0:0,-23.1793,-242.344	0/0:137:134,3:134:4732:3:104:0,-31.6504,-413.989	0/1:117:32,85:32:1140:85:3018:-206.326,0,-66.9	0/0:57:57,0:57:2020:0:0:0,-17.1587,-181.35	0/1:39:15,24:15:520:24:864:-47.7122,0,-34.8578	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.09	0/1:43:17,26:17:596:26:932:-58.5756,0,-40.7884	0/1:78:38,40:38:1340:40:1402:-73.1689,0,-97.3018	0/1:47:24,23:24:856:23:824:-42.6116,0,-63.0333	0/0:203:203,0:203:7146:0:0:0,-61.1091,-640.664	0/1:137:68,69:68:2409:69:2440:-159.128,0,-175.308	0/1:89:33,56:33:1152:56:1993:-110.672,0,-77.0026	0/1:104:35,69:35:1217:69:2459:-138.48,0,-78.3215	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.807	0/1:119:49,70:49:1728:70:2504:-158.086,0,-119.378	0/0:52:52,0:52:1844:0:0:0,-15.6536,-165.874	0/0:202:202,0:202:7130:0:0:0,-60.8081,-638.225	0/1:101:48,53:48:1724:53:1896:-116.781,0,-124.582	0/0:83:82,1:82:2936:1:36:0,-21.437,-259.781	0/1:82:37,45:37:1303:45:1590:-95.0607,0,-92.3838	0/1:158:73,85:73:2612:85:3040:-192.74,0,-187.17	0/1:21:12,9:12:428:9:324:-16.1152,0,-32.5022	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.727	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.517	0/1:66:36,30:36:1280:30:1068:-59.8724,0,-94.4146	0/1:120:66,54:66:2352:54:1940:-109.833,0,-174.68	0/1:111:36,75:36:1275:75:2667:-184.136,0,-80.6684	0/0:90:90,0:90:3204:0:0:0,-27.0927,-287.216	0/0:152:152,0:152:5412:0:0:0,-45.7566,-484.651
chr01	35706926	.	A	T	164624	PASS	AB=0.494977;ABP=3.88282;AC=144;AF=0.765957;AN=188;AO=7676;CIGAR=1X;DP=9709;DPB=9709;DPRA=35.1558;EPP=16662.5;EPPR=4413.27;GTI=4;LEN=1;MEANALT=1.02174;MQM=59.9041;MQMR=59.9887;NS=94;NUMALT=1;ODDS=0.649936;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=274091;QR=71622;RO=2031;RPL=7675;RPP=16662.5;RPPR=4413.27;RPR=1;RUN=1;SAF=7676;SAP=16671.2;SAR=0;SRF=2031;SRP=4413.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:140:74,66:74:2596:66:2372:-171.576,0,-191.725	1/1:136:0,136:0:0:136:4867:-438.165,-40.9401,0	1/1:190:0,190:0:0:190:6760:-608.435,-57.1957,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:52:28,24:28:993:24:864:-62.429,0,-74.0289	1/1:153:0,153:0:0:153:5476:-492.964,-46.0576,0	1/1:193:0,193:0:0:193:6904:-621.425,-58.0988,0	0/1:93:45,48:45:1578:48:1712:-126.37,0,-114.311	0/1:148:77,71:77:2711:71:2553:-185.468,0,-199.678	1/1:57:1,56:1:32:56:2002:-177.24,-13.9594,0	1/1:86:0,86:0:0:86:3075:-276.977,-25.8886,0	1/1:74:0,74:0:0:74:2640:-237.845,-22.2762,0	0/1:93:47,46:47:1661:46:1639:-119.802,0,-121.78	1/1:79:0,79:0:0:79:2816:-253.307,-23.7814,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:102:0,102:0:0:102:3640:-327.804,-30.7051,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	1/1:45:0,45:0:0:45:1598:-144.108,-13.5464,0	0/1:123:80,43:80:2790:43:1526:-100.603,0,-214.307	1/1:144:0,144:0:0:144:5139:-462.556,-43.3483,0	1/1:119:0,119:0:0:119:4234:-381.233,-35.8226,0	1/1:114:0,114:0:0:114:4068:-366.305,-34.3174,0	0/1:93:43,50:43:1484:50:1776:-132.126,0,-105.849	1/1:80:0,80:0:0:80:2840:-255.836,-24.0824,0	1/1:582:1,581:1:36:581:20791:-1867,-171.601,0	0/1:184:84,100:84:2969:100:3596:-268.451,0,-212.051	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	1/1:270:0,270:0:0:270:9665:-869.764,-81.2781,0	1/1:146:0,146:0:0:146:5232:-470.783,-43.9504,0	1/1:171:0,171:0:0:171:6114:-550.36,-51.4761,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:25:2,23:2:72:23:828:-68.0074,-0.689028,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	1/1:217:0,217:0:0:217:7739:-696.512,-65.3235,0	0/1:255:131,124:131:4573:124:4448:-323.487,0,-334.968	0/1:67:40,27:40:1423:27:972:-67.6289,0,-108.198	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:126:6,120:6:212:120:4293:-367.113,-18.505,0	0/1:46:22,24:22:769:24:853:-63.242,0,-55.6812	1/1:100:0,100:0:0:100:3529:-317.817,-30.103,0	1/1:79:0,79:0:0:79:2788:-251.155,-23.7814,0	0/1:68:28,40:28:1000:40:1436:-109.068,0,-69.8453	0/1:98:42,56:42:1508:56:2008:-151.488,0,-106.514	1/1:102:0,102:0:0:102:3624:-326.26,-30.7051,0	1/1:253:0,253:0:0:253:9063:-815.642,-76.1606,0	1/1:201:1,199:1:36:199:7069:-632.656,-56.9676,0	0/1:169:81,88:81:2859:88:3143:-232.22,0,-206.67	0/1:74:28,46:28:1000:46:1634:-125.071,0,-68.0392	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:121:64,57:64:2266:57:2013:-145.009,0,-167.774	1/1:53:0,53:0:0:53:1890:-170.376,-15.9546,0	1/1:19:0,19:0:0:19:665:-60.1736,-5.71957,0	1/1:84:0,84:0:0:84:2992:-269.51,-25.2865,0	1/1:50:0,50:0:0:50:1788:-161.202,-15.0515,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	1/1:73:0,73:0:0:73:2591:-233.436,-21.9752,0	1/1:119:1,117:1:36:117:4183:-373.052,-32.2831,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:258:0,258:0:0:258:9256:-833.001,-77.6657,0	0/1:258:144,114:144:5029:114:4070:-288.78,0,-375.088	0/1:92:51,41:51:1790:41:1452:-103.28,0,-133.684	1/1:56:0,56:0:0:56:2016:-181.712,-16.8577,0	1/1:132:1,131:1:36:131:4703:-419.786,-36.1377,0	0/1:128:83,45:83:2866:45:1588:-104.662,0,-219.636	1/1:27:0,27:0:0:27:960:-86.7157,-8.12781,0	0/1:87:34,53:34:1224:53:1893:-144.456,0,-84.2774	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	0/1:132:62,70:62:2220:70:2502:-185.695,0,-160.328	0/1:107:57,50:57:2010:50:1796:-129.712,0,-148.96	1/1:166:0,166:0:0:166:5897:-530.84,-49.971,0	0/1:200:101,99:101:3594:99:3525:-257.248,0,-263.459	0/1:108:53,55:53:1888:55:1962:-144.343,0,-137.687	0/1:197:82,115:82:2921:115:4093:-309.242,0,-203.821	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:127:59,68:59:2105:68:2411:-179.012,0,-151.487	1/1:90:0,90:0:0:90:3169:-285.415,-27.0927,0	1/1:50:0,50:0:0:50:1785:-160.918,-15.0515,0	0/1:106:42,64:42:1489:64:2299:-175.262,0,-102.393	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:101:57,44:57:1983:44:1576:-111.728,0,-148.335	0/1:186:91,95:91:3237:95:3390:-249.323,0,-235.559	0/1:47:27,20:27:964:20:712:-50.2582,0,-72.9284	1/1:77:0,77:0:0:77:2744:-247.193,-23.1793,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:33:22,11:22:792:11:396:-26.0488,0,-61.6717	0/1:94:42,52:42:1493:52:1853:-138.752,0,-106.366	0/1:77:51,26:51:1744:26:936:-61.3802,0,-134.057	1/1:144:1,143:1:32:143:5111:-456.93,-40.149,0	1/1:112:0,112:0:0:112:3994:-359.645,-33.7154,0
chr01	35728329	.	G	T	35330.2	PASS	AB=0.519038;ABP=15.5779;AC=46;AF=0.247312;AN=186;AO=2098;CIGAR=1X;DP=9437;DPB=9437;DPRA=1.02896;EPP=4541.4;EPPR=15822.4;GTI=2;LEN=1;MEANALT=1.01852;MQM=59.8851;MQMR=59.9861;NS=93;NUMALT=1;ODDS=0.803038;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74717;QR=261785;RO=7337;RPL=2096;RPP=4541.4;RPPR=15831;RPR=2;RUN=1;SAF=0;SAP=4558.76;SAR=2098;SRF=3;SRP=15909.1;SRR=7334;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:39,42:39:1387:42:1504:-111.271,0,-100.745	0/1:82:56,26:56:1975:26:928:-59.1538,0,-153.329	0/0:101:101,0:101:3615:0:0:0,-30.404,-325.555	0/0:212:212,0:212:7549:0:0:0,-63.8184,-679.454	0/1:52:19,33:19:680:33:1168:-89.7737,0,-45.8756	0/1:48:22,26:22:779:26:936:-70.11,0,-55.9826	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.949	0/0:169:169,0:169:5995:0:0:0,-50.8741,-539.659	0/1:127:62,65:62:2215:65:2303:-169.27,0,-161.383	0/1:97:42,55:42:1496:55:1968:-148.195,0,-105.735	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:87:87,0:87:3107:0:0:0,-26.1896,-279.857	0/1:63:34,29:34:1224:29:1036:-74.589,0,-91.5022	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.413	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.161	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:293:149,144:149:5340:144:5168:-377.057,0,-392.53	0/0:189:189,0:189:6701:0:0:0,-56.8947,-603.164	0/0:150:150,0:150:5339:0:0:0,-45.1545,-480.646	0/0:140:140,0:140:4990:0:0:0,-42.1442,-449.249	0/1:98:56,42:56:1961:42:1465:-102.641,0,-147.26	0/0:94:92,2:92:3275:2:72:0,-21.4601,-288.134	0/0:219:219,0:219:7792:0:0:0,-65.9256,-701.314	0/1:338:194,144:194:6951:144:5128:-359.902,0,-523.906	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:271:271,0:271:9692:0:0:0,-81.5791,-872.232	0/0:134:131,3:131:4696:3:93:0,-31.6613,-414.123	0/0:165:165,0:165:5887:0:0:0,-49.6699,-529.942	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:6,5:6:216:5:180:-13.2398,0,-16.4792	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/0:193:192,1:192:6873:1:21:0,-55.9988,-616.439	0/1:174:79,95:79:2806:95:3374:-251.125,0,-200.401	0/1:42:23,19:23:828:19:684:-49.2471,0,-62.2009	.:.:.:.:.:.:.:.	0/0:164:163,1:163:5803:1:36:0,-45.7706,-518.789	0/1:35:19,16:19:684:16:576:-41.6389,0,-51.3543	0/0:122:122,0:122:4338:0:0:0,-36.7257,-390.597	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:53:26,27:26:908:27:948:-69.6801,0,-66.0807	0/1:134:57,77:57:2048:77:2752:-207.584,0,-144.254	0/0:154:153,0:153:5467:0:0:0,-46.0576,-491.947	0/0:217:216,1:216:7714:1:36:0,-61.7252,-690.696	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/1:129:55,74:55:1972:74:2622:-197.388,0,-138.922	0/1:123:65,58:65:2328:58:2080:-150.436,0,-172.753	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:128:54,74:54:1927:74:2609:-196.524,0,-135.174	0/0:80:80,0:80:2827:0:0:0,-24.0824,-254.668	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:145:144,1:144:5116:1:36:0,-40.0511,-456.989	0/0:69:69,0:69:2455:0:0:0,-20.7711,-221.205	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:20:9,11:9:320:11:396:-29.9621,0,-23.1218	0/0:101:101,0:101:3623:0:0:0,-30.404,-326.167	0/0:81:79,2:79:2840:2:72:0,-17.5467,-248.996	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:170:170,0:170:6076:0:0:0,-51.1751,-546.944	0/1:226:93,133:93:3315:133:4741:-358.039,0,-230.536	0/1:73:45,28:45:1611:28:1008:-69.0435,0,-123.304	0/0:115:115,0:115:4075:0:0:0,-34.6184,-366.937	0/0:184:175,9:175:6238:9:320:0,-26.2472,-532.371	0/1:271:84,186:84:3003:186:6652:-517.157,0,-188.903	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:69:44,25:44:1553:25:892:-59.6382,0,-119.289	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/1:30:12,18:12:428:18:648:-49.621,0,-29.8279	0/1:141:88,53:88:3143:53:1888:-127.753,0,-240.65	0/1:99:47,52:47:1677:52:1845:-136.526,0,-121.413	0/0:165:165,0:165:5860:0:0:0,-49.6699,-527.514	0/1:77:31,46:31:1108:46:1640:-124.709,0,-76.8517	0/1:119:60,59:60:2144:59:2108:-154.167,0,-157.405	0/1:103:56,47:56:1986:47:1661:-118.769,0,-148.007	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:103:44,59:44:1568:59:2078:-156.281,0,-110.406	0/0:150:149,1:149:5287:1:36:0,-41.5562,-472.352	0/0:187:186,1:186:6648:1:36:0,-52.6943,-594.801	0/1:56:24,32:24:860:32:1144:-86.4118,0,-60.8642	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/1:45:18,27:18:648:27:964:-73.5305,0,-45.1055	0/1:145:71,74:71:2535:74:2624:-192.736,0,-184.751	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:70:35,35:35:1256:35:1240:-90.8324,0,-92.2732	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	0/1:84:33,51:33:1184:51:1813:-138.144,0,-81.5818	0/1:77:26,51:26:928:51:1820:-140.884,0,-60.6589	0/0:146:146,0:146:5198:0:0:0,-43.9504,-467.961	0/0:122:122,0:122:4371:0:0:0,-36.7257,-393.563
chr01	35732045	.	ATAG	TTAA,TTAG	467764	PASS	AB=0.481207,0.516138;ABP=24.965,19.2003;AC=142,44;AF=0.763441,0.236559;AN=186;AO=13358,3732;CIGAR=1X2M1X,1X3M;DP=17139;DPB=17139;DPRA=62.087,1.28109;EPP=29009.5,8106.95;EPPR=7.35324;GTI=2;LEN=4,1;MEANALT=2.11957,2.48333;MQM=57.1505,59.8505;MQMR=60;NS=93;NUMALT=2;ODDS=4.46178;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=470284,133482;QR=65;RO=2;RPL=6308,1863;RPP=92.5098,3.03125;RPPR=7.35324;RPR=7050,1869;RUN=1,1;SAF=6308,1863;SAP=92.5098,3.03125;SAR=7050,1869;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,19,25:0:0:19,25:680,884:-127.681,-72.3281,-66.6085,-55.7085,0,-48.1827	1/2:343:0,151,192:0:0:151,192:5363,6883:-998.231,-561.708,-516.253,-436.878,0,-379.081	1/1:266:0,266,0:0:0:266,0:9341,0:-838.676,-80.074,0,-838.676,-80.074,-838.676	1/1:517:0,514,3:0:0:514,3:18025,108:-1620.45,-154.729,0,-1611.63,-145.557,-1610.73	1/2:22:0,12,10:0:0:12,10:424,360:-64.1866,-29.7294,-26.117,-34.8137,0,-31.8034	1/2:36:0,11,25:0:0:11,25:382,900:-104.777,-73.7953,-70.4839,-31.3327,0,-23.807	1/1:285:0,284,1:0:0:284,1:9928,36:-892.248,-85.4925,0,-889.31,-82.1953,-889.009	1/1:250:0,250,0:0:0:250,0:8819,0:-790.776,-75.2575,0,-790.776,-75.2575,-790.776	1/2:143:0,75,66:0:0:75,66:2628,2345:-404.549,-191.182,-168.605,-213.46,0,-193.592	1/2:280:0,148,131:0:0:148,131:5255,4679:-809.36,-381.472,-336.92,-427.884,0,-388.449	1/1:103:0,102,1:0:0:102,1:3615,36:-324.796,-30.7051,0,-321.858,-27.4078,-321.557	1/1:144:0,143,0:0:0:143,0:5059,0:-453.507,-43.0473,0,-453.507,-43.0473,-453.507	1/1:130:0,128,0:0:0:128,0:4531,0:-406.606,-38.5318,0,-406.606,-38.5318,-406.606	1/2:133:0,59,74:0:0:59,74:2049,2639:-381.622,-215.48,-197.72,-166.492,0,-144.216	1/1:116:0,115,0:0:0:115,0:4067,0:-365.301,-34.6185,0,-365.301,-34.6185,-365.301	1/1:106:0,106,0:0:0:106,0:3736,0:-335.512,-31.9092,0,-335.512,-31.9092,-335.512	1/1:124:0,123,0:0:0:123,0:4334,0:-389.137,-37.0267,0,-389.137,-37.0267,-389.137	1/1:113:0,112,1:0:0:112,1:3991,36:-358.173,-33.7154,0,-355.235,-30.4181,-354.934	1/1:60:0,60,0:0:0:60,0:2136,0:-191.931,-18.0618,0,-191.931,-18.0618,-191.931	1/2:415:0,202,212:0:0:202,212:7147,7576:-1198.78,-617.692,-556.884,-581.085,0,-517.267	1/1:428:0,422,4:0:0:422,4:14866,144:-1335.6,-127.035,0,-1323.85,-115.248,-1322.65	1/1:62:0,62,0:0:0:62,0:2143,0:-193.124,-18.6639,0,-193.124,-18.6639,-193.124	1/1:149:0,147,2:0:0:147,2:5189,72:-466.314,-44.2514,0,-460.439,-38.0167,-459.837	1/2:195:0,111,84:0:0:111,84:3936,2996:-563.507,-244.579,-211.164,-319.283,0,-293.996	1/1:62:0,61,0:0:0:61,0:2174,0:-195.439,-18.3628,0,-195.439,-18.3628,-195.439	1/1:734:0,730,1:0:0:730,1:25719,36:-2311.79,-219.752,0,-2308.85,-216.795,-2308.55	1/2:471:0,230,241:0:0:230,241:8145,8640:-1367.75,-705.012,-635.775,-663.095,0,-590.547	1/1:75:0,75,0:0:0:75,0:2669,0:-239.987,-22.5773,0,-239.987,-22.5773,-239.987	1/1:366:0,365,0:0:0:365,0:12849,0:-1155.56,-109.876,0,-1155.56,-109.876,-1155.56	1/1:161:0,161,0:0:0:161,0:5658,0:-507.415,-48.4658,0,-507.415,-48.4658,-507.415	1/1:354:0,354,0:0:0:354,0:12503,0:-1124.65,-106.565,0,-1124.65,-106.565,-1124.65	1/1:3:0,3,0:0:0:3,0:101,0:-9.4136,-0.90309,0,-9.4136,-0.90309,-9.4136	1/2:22:0,10,12:0:0:10,12:352,432:-64.2483,-35.6088,-32.5985,-28.9948,0,-25.3825	1/2:4:0,3,1:0:0:3,1:94,36:-10.8169,-3.29724,-2.39415,-7.86783,0,-7.5668	1/1:10:0,10,0:0:0:10,0:353,0:-32.0923,-3.0103,0,-32.0923,-3.0103,-32.0923	1/2:19:0,8,11:0:0:8,11:281,396:-55.5386,-32.6714,-30.2632,-23.2219,0,-19.9106	1/1:376:0,375,0:0:0:375,0:13230,0:-1189.06,-112.886,0,-1189.06,-112.886,-1189.06	1/2:261:0,131,129:0:0:131,129:4639,4622:-753.954,-376.729,-337.294,-377.241,0,-338.408	1/2:109:0,56,53:0:0:56,53:1976,1904:-316.161,-155.667,-138.809,-160.85,0,-144.895	.:.:.:.:.:.:.:.	1/1:275:0,268,6:0:0:268,6:9410,216:-844.589,-80.676,0,-826.965,-63.0514,-825.159	1/2:51:0,20,31:0:0:20,31:713,1116:-149.099,-91.4106,-85.39,-58.0449,0,-48.7129	1/1:121:0,119,1:0:0:119,1:4191,36:-376.525,-35.8226,0,-373.588,-32.8743,-373.287	1/1:153:0,151,2:0:0:151,2:5349,72:-480.598,-45.4555,0,-474.723,-39.2209,-474.121	1/2:134:0,66,68:0:0:66,68:2327,2414:-385.933,-197.039,-177.171,-189.247,0,-168.777	1/2:172:0,85,87:0:0:85,87:2981,3123:-497.453,-255.045,-229.458,-242.762,0,-216.572	1/1:159:0,155,2:0:0:155,2:5470,72:-491.14,-46.6597,0,-485.265,-40.7848,-484.663	1/1:340:0,337,0:0:0:337,0:11861,0:-1065.53,-101.447,0,-1065.53,-101.447,-1065.53	1/1:165:0,165,0:0:0:165,0:5803,0:-521.969,-49.67,0,-521.969,-49.67,-521.969	1/2:244:0,126,116:0:0:126,116:4451,4137:-699.62,-337.276,-299.346,-362.383,0,-327.464	1/2:302:0,156,144:0:0:156,144:5453,5172:-865.374,-421.982,-375.021,-443.458,0,-400.109	1/2:16:0,11,5:0:0:11,5:394,180:-47.1732,-15.0445,-11.7332,-32.4879,0,-30.9827	1/2:251:0,132,117:0:0:132,117:4648,4192:-719.217,-341.9,-302.164,-377.376,0,-342.155	1/1:96:0,96,0:0:0:96,0:3376,0:-304.032,-28.8989,0,-304.032,-28.8989,-304.032	1/1:17:0,17,0:0:0:17,0:605,0:-54.6821,-5.11751,0,-54.6821,-5.11751,-54.6821	1/1:284:0,282,2:0:0:282,2:9909,72:-889.794,-84.8905,0,-883.919,-78.6558,-8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chr01	35760993	.	A	G	6949.98	PASS	AB=0.42582;ABP=70.0193;AC=43;AF=0.231183;AN=186;AO=598;CIGAR=1X;DP=3569;DPB=3569;DPRA=0.786539;EPP=1301.55;EPPR=6445.77;GTI=7;LEN=1;MEANALT=1;MQM=34.2659;MQMR=28.7516;NS=93;NUMALT=1;ODDS=1.537;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21437;QR=106534;RO=2971;RPL=598;RPP=1301.55;RPPR=6445.77;RPR=0;RUN=1;SAF=0;SAP=1301.55;SAR=598;SRF=0;SRP=6454.45;SRR=2971;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:4,2:4:144:2:72:-4.36152,0,-7.71687	0/1:35:21,14:21:752:14:504:-30.7283,0,-40.5504	0/0:36:36,0:36:1296:0:0:0,-10.8371,-90.322	0/0:36:36,0:36:1292:0:0:0,-10.8371,-89.6308	0/1:34:28,6:28:1008:6:216:-7.4432,0,-61.1661	0/1:29:12,17:12:417:17:612:-41.261,0,-20.4456	0/0:49:49,0:49:1760:0:0:0,-14.7505,-122.217	0/0:70:70,0:70:2516:0:0:0,-21.0721,-172.486	0/1:46:31,15:31:1116:15:532:-29.1943,0,-64.1624	0/1:37:15,22:15:536:22:788:-52.1677,0,-25.8627	0/0:25:25,0:25:900:0:0:0,-7.52575,-61.8382	0/0:33:33,0:33:1184:0:0:0,-9.93399,-81.9569	0/0:51:51,0:51:1832:0:0:0,-15.3525,-125.045	0/1:43:25,18:25:896:18:648:-39.7946,0,-48.8202	0/0:35:35,0:35:1248:0:0:0,-10.536,-85.8088	0/0:15:15,0:15:540:0:0:0,-4.51545,-37.0514	0/0:33:33,0:33:1188:0:0:0,-9.93399,-81.5388	0/0:51:51,0:51:1836:0:0:0,-15.3525,-126.595	0/0:17:17,0:17:604:0:0:0,-5.11751,-41.9898	0/1:38:14,24:14:504:24:864:-56.9106,0,-22.8276	0/0:70:70,0:70:2516:0:0:0,-21.0721,-173.061	0/0:41:41,0:41:1476:0:0:0,-12.3422,-102.017	0/0:11:11,0:11:396:0:0:0,-3.31133,-27.362	0/1:30:24,6:24:860:6:216:-7.25789,0,-49.7709	0/0:36:36,0:36:1292:0:0:0,-10.8371,-88.5325	0/0:212:212,0:212:7589:0:0:0,-63.8184,-525.975	0/1:52:34,18:34:1216:18:648:-36.3829,0,-69.7566	0/0:12:12,0:12:424:0:0:0,-3.61236,-28.8967	0/0:44:44,0:44:1580:0:0:0,-13.2453,-110.108	0/0:78:78,0:78:2804:0:0:0,-23.4803,-194.346	0/0:35:35,0:35:1256:0:0:0,-10.536,-87.6599	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.1239	0/1:5:4,1:4:144:1:36:-1.74101,0,-8.6188	0/0:1:1,0:1:32:0:0:0,-0.30103,-2.65466	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.1239	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	0/0:102:102,0:102:3660:0:0:0,-30.7051,-252.166	0/1:52:29,23:29:1029:23:828:-51.9144,0,-56.1681	0/1:40:15,25:15:540:25:900:-61.3698,0,-24.6697	.:.:.:.:.:.:.:.	0/0:30:30,0:30:1076:0:0:0,-9.0309,-74.8558	0/1:25:11,14:11:396:14:504:-34.0022,0,-19.8363	0/0:94:94,0:94:3361:0:0:0,-28.2968,-231.422	0/0:34:34,0:34:1224:0:0:0,-10.235,-84.4519	0/1:21:12,9:12:413:9:324:-18.1609,0,-22.7798	0/1:33:25,8:25:896:8:288:-13.3891,0,-52.4489	0/0:41:41,0:41:1476:0:0:0,-12.3422,-101.567	0/0:48:48,0:48:1712:0:0:0,-14.4494,-118.194	0/0:46:46,0:46:1633:0:0:0,-13.8474,-112.113	0/1:30:18,12:18:644:12:432:-24.8887,0,-35.3346	0/1:63:43,20:43:1548:20:712:-37.9606,0,-87.1509	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.19878	0/1:52:26,26:26:932:26:928:-60.229,0,-48.5735	0/0:24:24,0:24:856:0:0:0,-7.22472,-59.0676	0/0:8:8,0:8:280:0:0:0,-2.40824,-19.8255	0/0:20:20,0:20:716:0:0:0,-6.0206,-49.4515	0/0:12:12,0:12:432:0:0:0,-3.61236,-29.8246	0/1:4:1,3:1:36:3:108:-7.72123,0,-1.53208	0/1:6:5,1:5:180:1:36:-1.38144,0,-10.7803	0/0:36:36,0:36:1288:0:0:0,-10.8371,-90.8224	0/0:104:104,0:104:3740:0:0:0,-31.3071,-256.598	0/1:2:1,1:1:36:1:36:-2.58556,0,-2.13414	0/0:59:59,0:59:2116:0:0:0,-17.7608,-144.263	0/1:65:35,30:35:1260:30:1080:-66.6301,0,-67.4477	0/1:28:22,6:22:792:6:216:-9.42503,0,-45.6935	0/0:14:14,0:14:504:0:0:0,-4.21442,-34.7498	0/0:54:54,0:54:1932:0:0:0,-16.2556,-134.876	0/1:27:19,8:19:680:8:284:-14.9594,0,-40.9139	0/0:16:16,0:16:576:0:0:0,-4.81648,-39.6749	0/1:39:28,11:28:1008:11:381:-19.6642,0,-57.3254	0/0:85:85,0:85:3044:0:0:0,-25.5875,-211.836	0/1:7:3,4:3:108:4:144:-9.56389,0,-5.55416	0/1:33:20,13:20:720:13:464:-28.2205,0,-39.4306	0/1:19:11,8:11:396:8:288:-17.9774,0,-20.904	0/0:65:65,0:65:2336:0:0:0,-19.5669,-161.495	0/1:22:15,7:15:536:7:248:-12.9197,0,-30.3548	0/1:38:25,13:25:892:13:468:-26.8655,0,-49.9237	0/1:22:15,7:15:540:7:252:-14.1528,0,-30.5897	0/0:10:10,0:10:360:0:0:0,-3.0103,-25.6835	0/1:42:25,17:25:892:17:612:-36.2971,0,-49.0475	0/0:25:25,0:25:896:0:0:0,-7.52575,-62.3829	0/0:102:102,0:102:3660:0:0:0,-30.7051,-252.487	0/1:64:39,25:39:1404:25:896:-51.7721,0,-78.498	0/0:29:29,0:29:1040:0:0:0,-8.72987,-71.7379	0/1:29:12,17:12:432:17:612:-39.5363,0,-21.548	0/1:74:38,36:38:1364:36:1288:-81.0662,0,-73.8351	0/1:24:8,16:8:288:16:572:-38.2654,0,-12.5876	0/1:43:23,20:23:828:20:716:-45.4989,0,-43.8082	0/0:38:38,0:38:1364:0:0:0,-11.4391,-93.7781	0/1:27:15,12:15:540:12:428:-27.0532,0,-30.647	0/1:66:37,29:37:1324:29:1040:-64.1542,0,-70.0881	0/1:50:17,33:17:608:33:1180:-77.8171,0,-29.193	0/0:32:32,0:32:1152:0:0:0,-9.63296,-81.2504	0/0:37:37,0:37:1324:0:0:0,-11.1381,-92.7603
chr02	44274	.	T	C	24016.2	PASS	AB=0.50754;ABP=4.3528;AC=30;AF=0.159574;AN=188;AO=1401;CIGAR=1X;DP=7226;DPB=7226;DPRA=1.47347;EPP=2890.91;EPPR=12040.3;GTI=5;LEN=1;MEANALT=1.075;MQM=59.9971;MQMR=59.9962;NS=94;NUMALT=1;ODDS=0.104594;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50009;QR=207929;RO=5820;RPL=1383;RPP=2890.91;RPPR=12040.3;RPR=18;RUN=1;SAF=0;SAP=3045.24;SAR=1401;SRF=0;SRP=12641;SRR=5820;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/1:106:46,60:46:1626:60:2129:-159.968,0,-114.716	0/1:96:49,47:49:1737:47:1672:-121.866,0,-127.714	0/1:41:37,4:37:1324:4:144:-0.971388,0,-107.12	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:89:89,0:89:3165:0:0:0,-26.7917,-285.074	0/0:106:105,1:105:3741:1:36:0,-28.3109,-333.292	0/0:115:115,0:115:4104:0:0:0,-34.6184,-369.547	0/0:57:57,0:57:2009:0:0:0,-17.1587,-181.079	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:98:97,1:97:3484:1:36:0,-25.9027,-310.172	0/0:86:86,0:86:3061:0:0:0,-25.8886,-275.718	0/1:76:37,39:37:1320:39:1400:-103.421,0,-96.2237	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:80:47,33:47:1669:33:1179:-82.3348,0,-126.413	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:46:46,0:46:1625:0:0:0,-13.8474,-146.537	0/1:405:191,213:191:6856:213:7573:-559.632,0,-495.131	0/1:90:44,46:44:1584:46:1644:-121.155,0,-115.759	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.746	0/0:149:149,0:149:5314:0:0:0,-44.8535,-478.393	0/0:192:192,0:192:6842:0:0:0,-57.7978,-615.85	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5591	0/0:137:135,1:135:4836:1:36:0,-37.7016,-431.796	0/0:103:101,2:101:3628:2:72:0,-24.1694,-319.887	0/0:79:79,0:79:2809:0:0:0,-23.7814,-253.049	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:184:184,0:184:6580:0:0:0,-55.3895,-592.282	0/1:85:52,32:52:1826:32:1118:-75.4227,0,-139.118	0/1:72:35,37:35:1260:37:1318:-97.2478,0,-92.0313	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:103:103,0:103:3669:0:0:0,-31.0061,-330.413	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:129:69,60:69:2476:60:2129:-153.044,0,-184.261	0/1:64:35,29:35:1260:29:1040:-74.6484,0,-94.4396	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.692	0/1:113:61,52:61:2177:52:1872:-134.743,0,-162.048	0/1:98:44,54:44:1576:54:1940:-145.375,0,-112.631	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.466	0/0:73:72,1:72:2573:1:36:0,-18.3769,-228.22	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:85:85,0:85:3018:0:0:0,-25.5875,-271.849	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:120:63,57:63:2260:57:2052:-148.828,0,-167.539	0/1:38:21,17:21:748:17:612:-43.9743,0,-56.2062	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:105:105,0:105:3746:0:0:0,-31.6081,-337.338	0/1:14:12,2:12:428:2:72:-2.6223,0,-34.6444	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/0:148:140,8:140:5016:8:288:0,-18.285,-425.319	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:75:75,0:75:2666:0:0:0,-22.5772,-240.183	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/1:61:13,48:13:468:48:1720:-136.723,0,-24.0968	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:113:49,64:49:1760:64:2300:-173.244,0,-124.667	0/0:143:143,0:143:5112:0:0:0,-43.0473,-460.221	0/1:72:26,46:26:902:46:1637:-125.943,0,-59.8162	0/0:59:59,0:59:2089:0:0:0,-17.7608,-188.278	0/1:53:22,31:22:784:31:1116:-84.7971,0,-54.9293	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:145:145,0:145:5165:0:0:0,-43.6493,-464.992	0/0:95:94,0:94:3345:0:0:0,-28.2968,-301.055	0/0:153:152,1:152:5433:1:36:0,-42.4593,-485.5	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/1:89:38,51:38:1360:51:1813:-136.658,0,-95.9089	0/0:75:72,3:72:2580:3:108:0,-12.5021,-222.374	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:59:31,28:31:1116:28:1008:-73.2756,0,-82.9909	0/1:135:55,80:55:1961:80:2843:-215.469,0,-136.124	0/1:67:34,33:34:1224:33:1175:-85.8879,0,-90.298	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:49:25,24:25:900:24:860:-62.9714,0,-66.5705	0/1:131:71,60:71:2541:60:2137:-153.162,0,-189.504	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:61:59,2:59:2103:2:72:0,-11.5261,-182.702	0/0:71:70,0:70:2512:0:0:0,-21.0721,-225.972	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.935	0/1:151:86,65:86:3073:65:2321:-163.693,0,-231.341	0/1:100:40,60:40:1417:60:2141:-162.853,0,-97.7224	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:98:97,1:97:3472:1:36:0,-25.9027,-309.094
chr02	59141	.	G	A	28255.6	PASS	AB=0.477654;ABP=18.2465;AC=30;AF=0.159574;AN=188;AO=1712;CIGAR=1X;DP=10327;DPB=10327;DPRA=1.46388;EPP=3608.51;EPPR=18392.3;GTI=1;LEN=1;MEANALT=1.02222;MQM=59.6431;MQMR=59.9685;NS=94;NUMALT=1;ODDS=1.93036;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60930;QR=308137;RO=8612;RPL=1699;RPP=3608.51;RPPR=18392.3;RPR=13;RUN=1;SAF=1712;SAP=3720.57;SAR=0;SRF=8612;SRP=18703.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:77:77,0:77:2733:0:0:0,-23.1793,-245.656	0/0:125:124,1:124:4431:1:32:0,-34.4294,-395.762	0/1:131:71,60:71:2544:60:2122:-151.55,0,-189.768	0/1:208:116,92:116:4147:92:3271:-231.264,0,-310.799	0/0:65:64,0:64:2304:0:0:0,-19.2659,-207.261	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:73:72,1:72:2576:1:36:0,-18.3769,-228.491	0/0:179:179,0:179:6403:0:0:0,-53.8844,-576.357	0/0:205:205,0:205:7347:0:0:0,-61.7111,-661.276	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:104:104,0:104:3723:0:0:0,-31.3071,-335.271	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/1:76:44,32:44:1580:32:1140:-79.3682,0,-119.613	0/0:81:81,0:81:2903:0:0:0,-24.3834,-261.505	0/1:58:28,30:28:1004:30:1065:-78.7,0,-73.2161	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:226:114,112:114:4039:112:4008:-292.874,0,-295.666	0/1:219:126,93:126:4524:93:3305:-231.74,0,-341.4	0/0:119:119,0:119:4243:0:0:0,-35.8226,-382.05	0/0:172:168,4:168:6024:4:140:0,-38.8326,-529.319	0/1:86:77,9:77:2772:9:324:-3.61728,0,-223.83	0/0:148:147,1:147:5253:1:36:0,-40.9542,-469.277	0/0:265:263,2:263:9399:2:72:0,-72.9362,-838.982	0/0:282:282,0:282:10113:0:0:0,-84.8905,-910.098	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/0:321:321,0:321:11468:0:0:0,-96.6306,-1031.99	0/0:161:149,12:149:5344:12:428:0,-9.60858,-442.235	0/0:265:264,1:264:9438:1:36:0,-76.1747,-845.778	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:187:187,0:187:6685:0:0:0,-56.2926,-601.726	0/1:160:101,59:101:3594:59:2101:-141.186,0,-275.502	0/1:34:14,20:14:485:20:713:-54.2615,0,-33.7419	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:144:142,2:142:5072:2:72:0,-36.5116,-449.718	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6965	0/1:199:89,110:89:3180:110:3886:-290.018,0,-226.516	0/1:62:30,32:30:1076:32:1144:-84.5716,0,-78.489	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.554	0/1:140:75,65:75:2680:65:2324:-167.274,0,-199.301	0/1:161:98,63:98:3516:63:2252:-154.437,0,-268.183	0/0:210:208,2:208:7447:2:72:0,-56.3796,-663.421	0/0:92:91,1:91:3272:1:36:0,-24.0965,-290.386	0/0:143:143,0:143:5144:0:0:0,-43.0473,-463.098	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.788	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:127:58,69:58:2080:69:2476:-184.863,0,-149.239	0/1:65:40,25:40:1428:25:896:-61.3925,0,-109.251	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:164:164,0:164:5840:0:0:0,-49.3689,-525.714	0/1:80:36,44:36:1275:44:1580:-118.4,0,-90.9699	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:200:200,0:200:7149:0:0:0,-60.206,-643.467	0/0:204:203,1:203:7276:1:36:0,-57.8118,-651.291	0/1:73:33,40:33:1175:40:1413:-105.489,0,-84.0818	0/0:114:114,0:114:4071:0:0:0,-34.3174,-366.577	0/1:250:113,136:113:4017:136:4876:-363.764,0,-286.543	0/0:139:138,1:138:4932:1:32:0,-38.6439,-440.832	0/1:31:16,15:16:572:15:536:-39.2429,0,-42.4815	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:40:18,22:18:644:22:784:-58.8394,0,-46.2494	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:115:115,0:115:4127:0:0:0,-34.6184,-371.556	0/0:139:139,0:139:4951:0:0:0,-41.8432,-445.742	0/0:461:461,0:461:16473:0:0:0,-138.775,-1482.23	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:270:140,130:140:4993:130:4621:-334.752,0,-368.24	0/0:108:106,2:106:3799:2:72:0,-25.6745,-335.27	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:122:122,0:122:4388:0:0:0,-36.7257,-395.091	0/1:160:89,71:89:3175:71:2514:-177.85,0,-237.764	0/1:267:125,142:125:4475:142:5018:-371.368,0,-322.542	0/1:54:27,27:27:960:27:959:-70.3362,0,-70.4607	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/1:58:26,32:26:927:32:1136:-85.059,0,-66.2876	0/1:126:61,65:61:2196:65:2301:-169.413,0,-159.975	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:67:67,0:67:2399:0:0:0,-20.169,-216.166	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.877	0/0:34:33,0:33:1188:0:0:0,-9.93399,-106.869	0/1:76:44,32:44:1576:32:1141:-80.1188,0,-119.253	0/1:67:20,47:20:720:47:1676:-130.946,0,-44.9598	0/0:180:178,2:178:6379:2:72:0,-47.3487,-567.36	0/0:123:122,1:122:4392:1:36:0,-33.4284,-391.852
chr02	86688	.	G	A	36732.2	PASS	AB=0.516119;ABP=9.94049;AC=31;AF=0.164894;AN=188;AO=1595;CIGAR=1X;DP=7807;DPB=7807;DPRA=1.44784;EPP=8.76232;EPPR=7.31793;GTI=3;LEN=1;MEANALT=1;MQM=59.921;MQMR=59.9868;NS=94;NUMALT=1;ODDS=1.63117;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57025;QR=221407;RO=6211;RPL=15;RPP=3337.45;RPPR=13076.3;RPR=1580;RUN=1;SAF=845;SAP=15.2972;SAR=750;SRF=3209;SRP=17.991;SRR=3002;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:128:127,1:127:4542:1:36:0,-34.9336,-405.348	0/1:110:59,51:59:2086:51:1810:-130.046,0,-154.893	0/1:80:38,42:38:1338:42:1508:-111.932,0,-96.6336	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/0:80:80,0:80:2855:0:0:0,-24.0824,-257.188	0/0:70:70,0:70:2471:0:0:0,-21.0721,-222.642	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:141:141,0:141:5027:0:0:0,-42.4452,-452.578	0/0:149:149,0:149:5295:0:0:0,-44.8535,-476.686	0/0:153:153,0:153:5462:0:0:0,-46.0576,-491.709	0/1:141:72,69:72:2575:69:2465:-179.607,0,-189.554	0/0:108:108,0:108:3854:0:0:0,-32.5112,-347.055	0/1:71:32,39:32:1144:39:1396:-104.566,0,-81.8964	0/0:135:135,0:135:4813:0:0:0,-40.639,-433.325	0/0:103:103,0:103:3640:0:0:0,-31.0061,-327.806	0/0:96:96,0:96:3427:0:0:0,-28.8989,-308.644	0/1:119:47,72:47:1665:72:2572:-195.907,0,-114.313	0/1:119:62,57:62:2215:57:2040:-147.859,0,-163.791	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/1:79:71,8:71:2528:8:288:-2.48604,0,-203.988	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.607	0/0:105:105,0:105:3752:0:0:0,-31.6081,-337.878	0/0:120:119,1:119:4259:1:36:0,-32.5253,-379.89	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:89:89,0:89:3172:0:0:0,-26.7917,-285.703	0/0:58:57,1:57:2009:1:36:0,-13.8615,-177.476	0/0:73:72,1:72:2561:1:36:0,-18.3769,-227.141	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:11:11,0:11:373:0:0:0,-3.31133,-33.8952	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	0/0:270:270,0:270:9622:0:0:0,-81.2781,-865.929	0/1:66:28,38:28:1000:38:1352:-102.112,0,-70.4474	0/1:155:84,71:84:3004:71:2548:-182.911,0,-223.932	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:88:88,0:88:3138:0:0:0,-26.4906,-282.645	0/0:70:69,1:69:2464:1:36:0,-17.4738,-218.416	0/1:97:44,53:44:1580:53:1908:-142.793,0,-113.292	0/1:135:63,72:63:2255:72:2592:-192.889,0,-162.573	0/0:99:99,0:99:3526:0:0:0,-29.802,-317.464	0/1:74:39,35:39:1385:35:1244:-89.9852,0,-102.671	0/1:77:36,41:36:1269:41:1476:-109.957,0,-91.3314	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:89:88,0:88:3148:0:0:0,-26.4906,-283.186	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:121:57,64:57:2040:64:2271:-168.219,0,-147.447	0/1:31:15,16:15:540:16:564:-41.7584,0,-39.6046	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/1:38:15,23:15:540:23:820:-62.6834,0,-37.4974	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:79:79,0:79:2807:0:0:0,-23.7814,-252.868	0/0:170:169,1:169:6038:1:36:0,-47.5768,-539.926	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:106:104,2:104:3687:2:72:0,-25.0725,-325.196	0/1:36:21,15:21:756:15:532:-37.3727,0,-57.5301	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:84:37,47:37:1328:47:1660:-124.398,0,-94.5357	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.128	0/1:113:60,53:60:2156:53:1904:-137.621,0,-160.291	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/1:156:68,88:68:2427:88:3149:-236.672,0,-171.725	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:53:52,1:52:1859:1:36:0,-12.3563,-163.991	0/0:153:153,0:153:5442:0:0:0,-46.0576,-489.909	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/1:78:31,47:31:1103:47:1655:-125.754,0,-76.0995	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.029	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:55:55,0:55:1945:0:0:0,-16.5566,-175.324	0/1:67:22,45:22:784:45:1603:-124.39,0,-50.7067	0/1:141:67,74:67:2383:74:2647:-196.031,0,-172.282	0/1:152:79,73:79:2826:73:2624:-190.648,0,-208.819	0/0:78:78,0:78:2733:0:0:0,-23.4803,-246.212	0/1:135:54,81:54:1931:81:2892:-219.878,0,-133.427	0/1:267:144,123:144:5159:123:4411:-316.783,0,-384.075	0/0:69:69,0:69:2452:0:0:0,-20.7711,-220.928	0/0:101:101,0:101:3613:0:0:0,-30.404,-325.374	0/0:140:140,0:140:4946:0:0:0,-42.1442,-445.291	0/0:80:80,0:80:2867:0:0:0,-24.0824,-258.266	0/1:178:85,93:85:3012:93:3326:-245.973,0,-217.727	0/1:131:50,81:50:1792:81:2908:-222.52,0,-122.128	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/0:191:190,1:190:6800:1:36:0,-53.8985,-608.474
chr02	86694	.	G	A	36023.2	PASS	AB=0.513549;ABP=7.89416;AC=31;AF=0.164894;AN=188;AO=1584;CIGAR=1X;DP=7798;DPB=7798;DPRA=1.454;EPP=3425.27;EPPR=13481.3;GTI=3;LEN=1;MEANALT=1;MQM=59.9407;MQMR=59.9842;NS=94;NUMALT=1;ODDS=1.27293;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56541;QR=221398;RO=6211;RPL=838;RPP=14.6134;RPPR=15.7647;RPR=746;RUN=1;SAF=840;SAP=15.6443;SAR=744;SRF=3202;SRP=16.0332;SRR=3009;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:126:125,1:125:4478:1:36:0,-34.3315,-399.589	0/1:113:61,52:61:2183:52:1868:-134.193,0,-162.683	0/1:82:39,43:39:1400:43:1544:-114.569,0,-101.615	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/0:103:103,0:103:3643:0:0:0,-31.0061,-328.075	0/0:79:79,0:79:2803:0:0:0,-23.7814,-252.508	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:145:145,0:145:5154:0:0:0,-43.6493,-464.001	0/0:152:152,0:152:5384:0:0:0,-45.7566,-484.693	0/0:152:151,0:151:5395:0:0:0,-45.4555,-485.319	0/1:142:72,70:72:2568:70:2497:-181.859,0,-188.624	0/0:106:106,0:106:3774:0:0:0,-31.9092,-339.86	0/1:72:32,40:32:1144:40:1420:-106.423,0,-81.5954	0/0:134:134,0:134:4781:0:0:0,-40.338,-430.447	0/0:102:102,0:102:3644:0:0:0,-30.7051,-328.165	0/0:93:93,0:93:3294:0:0:0,-27.9958,-296.678	0/1:121:48,73:48:1687:73:2617:-199.353,0,-115.688	0/1:114:59,55:59:2107:55:1963:-142.627,0,-155.581	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:48:48,0:48:1685:0:0:0,-14.4494,-151.932	0/1:78:70,8:70:2508:8:288:-2.78707,0,-202.492	0/0:60:60,0:60:2131:0:0:0,-18.0618,-191.788	0/0:105:105,0:105:3752:0:0:0,-31.6081,-337.881	0/0:120:119,1:119:4247:1:36:0,-32.5253,-378.812	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.533	0/0:91:90,0:90:3210:0:0:0,-27.0927,-288.901	0/0:60:59,1:59:2097:1:36:0,-14.4635,-185.398	0/0:71:70,1:70:2516:1:36:0,-17.7749,-223.093	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/0:269:269,0:269:9606:0:0:0,-80.9771,-864.485	0/1:65:28,37:28:1008:37:1328:-100.255,0,-71.4694	0/1:151:83,68:83:2961:68:2409:-171.611,0,-221.266	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:91:91,0:91:3246:0:0:0,-27.3937,-292.36	0/0:70:69,1:69:2468:1:36:0,-17.4738,-218.776	0/1:97:45,52:45:1568:52:1868:-139.195,0,-112.205	0/1:134:63,71:63:2268:71:2537:-188.241,0,-164.044	0/0:103:102,1:102:3647:1:36:0,-27.4078,-324.75	0/1:70:39,31:39:1379:31:1116:-79.6796,0,-103.336	0/1:77:36,41:36:1296:41:1464:-108.877,0,-93.7646	0/0:70:69,0:69:2452:0:0:0,-20.7711,-220.662	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:87:87,0:87:3076:0:0:0,-26.1896,-277.066	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:122:58,64:58:2075:64:2281:-168.816,0,-150.294	0/1:31:15,16:15:512:16:568:-42.1199,0,-37.0698	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:75:75,0:75:2656:0:0:0,-22.5772,-239.285	0/1:39:16,23:16:572:23:828:-63.1039,0,-40.0733	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:171:170,1:170:6078:1:36:0,-47.8779,-543.523	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:101:99,2:99:3534:2:72:0,-23.5673,-311.432	0/1:36:21,15:21:748:15:524:-36.6501,0,-56.8082	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:83:36,47:36:1268:47:1669:-125.51,0,-89.4345	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.064	0/1:110:58,52:58:2067:52:1864:-134.926,0,-153.187	0/0:41:41,0:41:1441:0:0:0,-12.3422,-129.984	0/1:156:68,88:68:2428:88:3148:-236.583,0,-171.815	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:52:51,1:51:1824:1:36:0,-12.0553,-160.843	0/0:153:153,0:153:5431:0:0:0,-46.0576,-488.919	0/0:93:93,0:93:3333:0:0:0,-27.9958,-300.185	0/1:77:33,44:33:1180:44:1576:-118.952,0,-83.3287	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/1:64:21,43:21:743:43:1517:-117.555,0,-47.9274	0/1:142:69,73:69:2452:73:2582:-189.881,0,-178.189	0/1:154:81,73:81:2904:73:2624:-190.046,0,-215.237	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/1:136:53,83:53:1870:83:2956:-225.332,0,-127.635	0/1:264:144,120:144:5145:120:4291:-306.893,0,-383.719	0/0:69:69,0:69:2458:0:0:0,-20.7711,-221.459	0/0:99:99,0:99:3532:0:0:0,-29.802,-318.09	0/0:140:140,0:140:4961:0:0:0,-42.1442,-446.641	0/0:81:81,0:81:2859:0:0:0,-24.3834,-257.547	0/1:182:86,96:86:3055:96:3425:-253.672,0,-220.39	0/1:132:50,82:50:1788:82:2913:-222.668,0,-121.467	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.942	0/0:191:190,1:190:6796:1:36:0,-53.8985,-608.115
chr02	123646	.	G	A	8528.02	PASS	AB=0.387197;ABP=217.096;AC=31;AF=0.168478;AN=184;AO=761;CIGAR=1X;DP=6300;DPB=6300;DPRA=1.15088;EPP=1655.5;EPPR=11952.7;GTI=3;LEN=1;MEANALT=1.08333;MQM=59.7714;MQMR=59.9798;NS=92;NUMALT=1;ODDS=4.58856;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24394;QR=198156;RO=5535;RPL=0;RPP=1655.5;RPPR=11961.4;RPR=761;RUN=1;SAF=761;SAP=1655.5;SAR=0;SRF=5534;SRP=12013.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:71:71,0:71:2532:0:0:0,-21.3731,-227.814	0/1:89:54,35:54:1924:35:1082:-70.8575,0,-146.645	0/1:112:74,38:74:2648:38:1216:-76.005,0,-204.851	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/1:53:29,24:29:1040:24:824:-58.5157,0,-77.9598	0/0:85:85,0:85:3047:0:0:0,-25.5875,-274.459	0/1:57:36,21:36:1292:21:650:-41.6309,0,-99.4251	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:62:29,32:29:1040:32:973:-69.2724,0,-75.3366	0/1:102:63,39:63:2236:39:1299:-86.4931,0,-170.797	0/0:47:46,0:46:1652:0:0:0,-13.8474,-148.609	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/0:52:50,2:50:1775:2:72:0,-8.81684,-153.196	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:215:215,0:215:7699:0:0:0,-64.7214,-692.943	0/0:165:165,0:165:5900:0:0:0,-49.6699,-531.111	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.116	0/0:114:114,0:114:4067:0:0:0,-34.3174,-366.112	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.734	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.747	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	.:.:.:.:.:.:.:.	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:248:247,1:247:8826:1:36:0,-71.0572,-790.727	0/1:72:49,23:49:1743:23:755:-46.5793,0,-135.479	0/1:106:69,37:69:2476:37:1165:-72.3619,0,-191.183	.:.:.:.:.:.:.:.	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.642	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/1:57:35,22:35:1260:22:674:-43.789,0,-96.5468	0/1:76:43,33:43:1548:33:1043:-71.276,0,-116.735	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/1:44:28,16:28:1004:16:467:-29.0631,0,-77.3243	0/1:38:27,11:27:964:11:343:-19.7319,0,-75.6377	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/0:71:70,1:70:2512:1:32:0,-18.1738,-223.133	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:71:40,30:40:1436:30:967:-66.0333,0,-108.252	0/1:22:10,12:10:360:12:341:-24.3441,0,-26.1216	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:31:11,20:11:392:20:651:-49.5623,0,-26.2881	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:136:135,1:135:4828:1:21:0,-38.8401,-432.575	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:146:145,1:145:5176:1:36:0,-40.3521,-462.381	0/0:139:139,0:139:4996:0:0:0,-41.8432,-449.785	0/1:50:26,24:26:936:24:784:-55.806,0,-69.508	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.757	0/1:79:55,24:55:1976:24:783:-46.9427,0,-154.333	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:20:14,6:14:504:6:208:-13.0341,0,-39.6775	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/1:70:45,25:45:1607:25:794:-50.6741,0,-123.847	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.04	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.957	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:52:39,13:39:1400:13:404:-21.0039,0,-110.646	0/0:86:84,2:84:3012:2:72:0,-19.0519,-264.474	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:60:35,25:35:1252:25:749:-49.6234,0,-94.9233	0/1:145:83,62:83:2979:62:1978:-134.625,0,-224.692	0/1:87:56,30:56:2016:30:993:-63.4171,0,-155.464	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:71:54,17:54:1940:17:570:-30.2414,0,-153.503	0/1:125:75,50:75:2672:50:1657:-111.638,0,-203.097	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:105:56,49:56:1991:49:1621:-114.555,0,-147.855	0/1:64:35,29:35:1239:29:918:-63.6414,0,-92.5477	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/0:125:125,0:125:4468:0:0:0,-37.6287,-402.291
chr02	162160	.	G	A	72740	PASS	AB=0.474069;ABP=11.7944;AC=158;AF=0.840426;AN=188;AO=3533;CIGAR=1X;DP=4328;DPB=4328;DPRA=0;EPP=7674.82;EPPR=1720.66;GTI=1;LEN=1;MEANALT=1;MQM=59.5443;MQMR=59.9358;NS=94;NUMALT=1;ODDS=0.0424561;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121820;QR=28229;RO=795;RPL=3533;RPP=7674.82;RPPR=1720.66;RPR=0;RUN=1;SAF=3533;SAP=7674.82;SAR=0;SRF=795;SRP=1729.33;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1477:-133.201,-12.9443,0	1/1:42:0,42:0:0:42:1430:-128.962,-12.6433,0	0/1:125:66,59:66:2347:59:2005:-142.994,0,-173.859	0/1:93:52,41:52:1852:41:1403:-98.5453,0,-138.959	1/1:25:0,25:0:0:25:880:-79.5039,-7.52575,0	1/1:37:0,37:0:0:37:1268:-114.373,-11.1381,0	1/1:30:0,30:0:0:30:1044:-94.2635,-9.0309,0	1/1:97:0,97:0:0:97:3363:-302.84,-29.1999,0	1/1:56:1,55:1:36:55:1895:-167.189,-13.2594,0	1/1:41:0,41:0:0:41:1390:-125.39,-12.3422,0	1/1:20:0,20:0:0:20:686:-62.0583,-6.0206,0	1/1:74:0,74:0:0:74:2529:-227.844,-22.2762,0	1/1:51:2,49:2:72:49:1681:-144.683,-8.51581,0	0/1:40:18,22:18:627:22:760:-56.6321,0,-44.7132	1/1:35:0,35:0:0:35:1184:-106.859,-10.5361,0	0/1:34:21,13:21:743:13:464:-31.8487,0,-56.9583	1/1:19:0,19:0:0:19:668:-60.4457,-5.71957,0	1/1:9:0,9:0:0:9:303:-27.5741,-2.70927,0	1/1:13:0,13:0:0:13:451:-40.9198,-3.91339,0	0/1:37:26,11:26:936:11:392:-24.2527,0,-73.4214	0/1:53:27,26:27:946:26:875:-63.0855,0,-69.4983	1/1:66:0,66:0:0:66:2300:-207.191,-19.868,0	1/1:36:0,36:0:0:36:1264:-114.043,-10.8371,0	1/1:32:1,31:1:36:31:1072:-93.1891,-6.03469,0	1/1:61:0,61:0:0:61:2082:-187.618,-18.3628,0	1/1:110:0,110:0:0:110:3818:-343.445,-33.1133,0	1/1:89:0,89:0:0:89:3066:-276.087,-26.7917,0	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	1/1:100:0,100:0:0:100:3437:-309.545,-30.103,0	1/1:76:0,76:0:0:76:2617:-235.431,-22.8783,0	1/1:43:0,43:0:0:43:1498:-135.064,-12.9443,0	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3683	1/1:14:0,14:0:0:14:488:-44.2504,-4.21442,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:15:0,15:0:0:15:493:-44.6268,-4.51545,0	0/1:16:6,10:6:216:10:356:-27.5196,0,-14.974	1/1:132:0,132:0:0:132:4516:-406.609,-39.736,0	0/1:103:56,47:56:2008:47:1660:-118.624,0,-149.987	0/1:23:10,13:10:356:13:443:-33.2719,0,-25.456	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:55:0,55:0:0:55:1910:-172.163,-16.5567,0	1/1:18:0,18:0:0:18:620:-56.1229,-5.41854,0	0/1:84:44,40:44:1568:40:1371:-98.3856,0,-116.125	0/1:25:15,10:15:540:10:344:-23.7663,0,-41.4108	1/1:30:0,30:0:0:30:1040:-93.7656,-9.0309,0	0/1:53:30,23:30:1068:23:797:-56.0846,0,-80.4775	0/1:70:33,37:33:1188:37:1280:-94.4284,0,-86.1565	1/1:84:0,84:0:0:84:2908:-261.733,-25.2865,0	1/1:49:0,49:0:0:49:1664:-150.041,-14.7505,0	1/1:50:0,50:0:0:50:1748:-157.597,-15.0515,0	1/1:30:0,30:0:0:30:1036:-93.5489,-9.0309,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:100:57,43:57:2024:43:1467:-102.189,0,-152.326	0/1:18:7,11:7:248:11:365:-27.7513,0,-17.2457	1/1:17:0,17:0:0:17:580:-52.5221,-5.11751,0	1/1:57:0,57:0:0:57:1934:-174.227,-17.1587,0	0/1:28:15,13:15:540:13:460:-33.304,0,-40.5077	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	1/1:6:0,6:0:0:6:204:-18.69,-1.80618,0	1/1:51:0,51:0:0:51:1778:-160.273,-15.3525,0	1/1:59:0,59:0:0:59:2037:-183.563,-17.7608,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:71:0,71:0:0:71:2455:-221.119,-21.3731,0	1/1:91:0,91:0:0:91:3134:-282.276,-27.3937,0	0/1:19:8,11:8:284:11:380:-28.8096,0,-20.1838	1/1:25:0,25:0:0:25:840:-75.9083,-7.52575,0	0/1:80:41,39:41:1468:39:1352:-97.8928,0,-108.334	1/1:71:0,71:0:0:71:2441:-219.939,-21.3731,0	0/1:14:8,6:8:284:6:204:-14.4789,0,-21.6889	1/1:43:0,43:0:0:43:1470:-132.581,-12.9443,0	0/1:17:9,8:9:320:8:275:-19.966,0,-24.0248	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:110:0,110:0:0:110:3831:-344.512,-33.1133,0	1/1:25:0,25:0:0:25:849:-76.6538,-7.52575,0	1/1:68:0,68:0:0:68:2353:-211.789,-20.47,0	1/1:75:0,75:0:0:75:2594:-233.71,-22.5773,0	0/1:104:47,57:47:1675:57:1998:-148.779,0,-119.729	1/1:41:0,41:0:0:41:1413:-127.432,-12.3422,0	1/1:12:0,12:0:0:12:416:-37.7716,-3.61236,0	1/1:36:0,36:0:0:36:1234:-111.354,-10.8371,0	0/1:51:35,16:35:1229:16:538:-33.2989,0,-95.5594	0/1:68:34,34:34:1189:34:1188:-86.7402,0,-86.8429	0/1:44:20,24:20:707:24:818:-60.687,0,-50.7093	1/1:33:0,33:0:0:33:1132:-102.168,-9.93399,0	0/1:20:7,13:7:252:13:443:-34.1749,0,-17.0084	0/1:76:39,37:39:1365:37:1282:-92.8008,0,-100.262	1/1:11:0,11:0:0:11:380:-34.532,-3.31133,0	1/1:48:0,48:0:0:48:1631:-146.988,-14.4494,0	1/1:44:0,44:0:0:44:1521:-137.041,-13.2453,0	1/1:19:0,19:0:0:19:672:-60.8002,-5.71957,0	0/1:67:36,31:36:1241:31:1070:-76.4168,0,-91.8178	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	1/1:53:0,53:0:0:53:1823:-164.35,-15.9546,0	1/1:40:0,40:0:0:40:1378:-124.312,-12.0412,0
chr02	162253	.	A	T	13842	PASS	AB=0.498197;ABP=3.05728;AC=31;AF=0.164894;AN=188;AO=840;CIGAR=1X;DP=5058;DPB=5058;DPRA=1.10878;EPP=1827.05;EPPR=9157.94;GTI=1;LEN=1;MEANALT=1.03125;MQM=60;MQMR=59.9998;NS=94;NUMALT=1;ODDS=2.91689;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30033;QR=150059;RO=4216;RPL=0;RPP=1827.05;RPPR=9157.94;RPR=840;RUN=1;SAF=0;SAP=1827.05;SAR=840;SRF=0;SRP=9157.94;SRR=4216;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.902	0/1:77:35,42:35:1248:42:1493:-111.483,0,-89.4456	0/1:99:51,48:51:1815:48:1709:-124.292,0,-133.829	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:103:103,0:103:3639:0:0:0,-31.0061,-327.716	0/0:81:81,0:81:2871:0:0:0,-24.3834,-258.626	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.858	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:41:23,18:23:824:18:640:-45.5871,0,-62.1411	0/0:24:24,0:24:831:0:0:0,-7.22472,-75.1031	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:37:37,0:37:1300:0:0:0,-11.1381,-117.298	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9198	0/1:96:53,43:53:1896:43:1544:-110.354,0,-142.019	0/1:75:36,39:36:1280:39:1386:-102.461,0,-92.926	0/0:110:110,0:110:3930:0:0:0,-33.1133,-353.892	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:66:64,2:64:2269:2:72:0,-13.0313,-197.634	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:196:196,0:196:7003:0:0:0,-59.0019,-630.334	0/0:67:67,0:67:2373:0:0:0,-20.169,-213.827	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:74:74,0:74:2624:0:0:0,-22.2762,-236.406	0/0:107:102,5:102:3644:5:180:0,-15.6581,-311.613	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:96:96,0:96:3427:0:0:0,-28.8989,-308.644	0/1:128:62,66:62:2216:66:2352:-173.406,0,-161.173	0/1:24:15,9:15:532:9:324:-22.2811,0,-40.9884	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/0:63:63,0:63:2224:0:0:0,-18.9649,-200.423	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/1:94:48,45:48:1720:45:1612:-117.171,0,-126.886	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/0:32:32,0:32:1123:0:0:0,-9.63296,-101.377	0/1:45:26,19:26:936:19:684:-48.344,0,-71.0131	0/1:100:55,45:55:1968:45:1608:-114.907,0,-147.292	0/0:123:123,0:123:4358:0:0:0,-37.0267,-392.395	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.347	0/0:86:86,0:86:3069:0:0:0,-25.8886,-276.437	0/0:79:79,0:79:2799:0:0:0,-23.7814,-252.149	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:90:46,44:46:1644:44:1584:-115.759,0,-121.156	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:62:62,0:62:2197:0:0:0,-18.6639,-197.994	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.822	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:139:139,0:139:4965:0:0:0,-41.8432,-446.998	0/0:136:136,0:136:4870:0:0:0,-40.9401,-438.451	0/1:58:30,28:30:1076:28:1008:-73.5766,0,-79.6931	0/0:46:46,0:46:1623:0:0:0,-13.8474,-146.358	0/1:57:32,25:32:1135:25:882:-62.5375,0,-85.2994	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:56:29,27:29:1023:27:968:-70.5797,0,-75.5241	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:70:70,0:70:2484:0:0:0,-21.0721,-223.812	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:61:61,0:61:2125:0:0:0,-18.3628,-191.515	0/0:116:116,0:116:4131:0:0:0,-34.9195,-371.973	0/1:68:38,30:38:1356:30:1052:-74.5177,0,-101.87	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:84:83,0:83:2956:0:0:0,-24.9855,-265.912	0/1:79:50,29:50:1785:29:1036:-69.7725,0,-137.149	0/1:109:49,60:49:1739:60:2148:-160.775,0,-123.981	0/1:69:30,39:30:1072:39:1400:-105.528,0,-76.0214	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/1:41:11,30:11:383:30:1080:-85.171,0,-22.461	0/1:79:36,43:36:1277:43:1544:-115.472,0,-91.4497	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:36:36,0:36:1266:0:0:0,-10.8371,-114.241	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:35:14,21:14:496:21:751:-57.3799,0,-34.4382	0/1:40:13,27:13:456:27:968:-75.3962,0,-29.332	0/0:57:57,0:57:2014:0:0:0,-17.1587,-181.53	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086
chr02	163006	.	G	A	122361	PASS	AB=0.48097;ABP=10.531;AC=154;AF=0.819149;AN=188;AO=5616;CIGAR=1X;DP=6873;DPB=6873;DPRA=24.8804;EPP=12198;EPPR=2728.21;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9902;MQMR=60;NS=94;NUMALT=1;ODDS=1.2822;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200949;QR=44934;RO=1255;RPL=5616;RPP=12198;RPPR=2728.21;RPR=0;RUN=1;SAF=0;SAP=12198;SAR=5616;SRF=0;SRP=2728.21;SRR=1255;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:68:0,68:0:0:68:2411:-217.245,-20.47,0	0/1:121:60,61:60:2152:61:2184:-160.401,0,-157.523	0/1:158:86,72:86:3079:72:2576:-184.527,0,-229.775	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:96:1,95:1:36:95:3384:-301.163,-25.3006,0	1/1:124:0,124:0:0:124:4443:-400.04,-37.3277,0	1/1:55:0,55:0:0:55:1957:-176.404,-16.5567,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:108:0,108:0:0:108:3884:-349.753,-32.5112,0	1/1:74:0,74:0:0:74:2633:-237.207,-22.2762,0	0/1:57:31,26:31:1116:26:927:-66.5887,0,-83.593	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	0/1:77:35,42:35:1260:42:1495:-111.664,0,-90.5262	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:118:68,50:68:2444:50:1796:-126.401,0,-184.693	0/1:143:80,63:80:2844:63:2268:-161.335,0,-213.152	1/1:56:0,56:0:0:56:1998:-180.094,-16.8577,0	1/1:90:0,90:0:0:90:3236:-291.461,-27.0927,0	0/1:66:7,59:7:252:59:2095:-168.949,0,-3.16098	1/1:47:0,47:0:0:47:1658:-149.504,-14.1484,0	1/1:205:0,205:0:0:205:7321:-658.94,-61.7112,0	1/1:266:0,266:0:0:266:9529:-857.564,-80.074,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:187:0,187:0:0:187:6628:-596.598,-56.2926,0	1/1:77:5,72:5:180:72:2584:-216.257,-6.62725,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:182:0,182:0:0:182:6520:-586.883,-54.7875,0	0/1:66:34,32:34:1220:32:1144:-83.4015,0,-90.2388	0/1:63:35,28:35:1260:28:1008:-72.0715,0,-94.7406	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:93:0,93:0:0:93:3327:-299.647,-27.9958,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:102:54,48:54:1932:48:1716:-124.021,0,-143.452	0/1:74:41,33:41:1472:33:1161:-82.5194,0,-110.5	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:81:32,49:32:1148:49:1756:-133.941,0,-79.2464	0/1:97:55,41:55:1959:41:1471:-103.574,0,-147.473	1/1:131:0,131:0:0:131:4708:-423.878,-39.4349,0	1/1:76:0,76:0:0:76:2736:-246.482,-22.8783,0	1/1:92:0,92:0:0:92:3295:-296.769,-27.6948,0	1/1:71:0,71:0:0:71:2550:-229.75,-21.3731,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:82:47,34:47:1680:34:1216:-85.0034,0,-126.744	0/1:37:21,16:21:756:16:576:-41.0369,0,-57.2291	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:125:0,125:0:0:125:4476:-402.996,-37.6288,0	0/1:39:18,21:18:648:21:752:-56.2661,0,-46.9117	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0	1/1:104:3,101:3:108:101:3617:-315.659,-21.232,0	0/1:61:34,27:34:1224:27:968:-69.0745,0,-92.1042	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:97:47,50:47:1684:50:1781:-131.371,0,-122.647	1/1:122:1,121:1:36:121:4294:-383.038,-33.1274,0	0/1:44:22,22:22:788:22:784:-57.6386,0,-57.9995	1/1:60:0,60:0:0:60:2132:-192.149,-18.0618,0	0/1:42:24,18:24:860:18:644:-45.6473,0,-65.0786	1/1:17:0,17:0:0:17:596:-53.9678,-5.11751,0	1/1:110:0,110:0:0:110:3931:-353.981,-33.1133,0	1/1:86:0,86:0:0:86:3080:-277.428,-25.8886,0	1/1:111:0,111:0:0:111:3948:-355.512,-33.4143,0	1/1:136:0,136:0:0:136:4884:-439.711,-40.9401,0	0/1:40:20,20:20:720:20:716:-52.7265,0,-53.0876	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	0/1:81:40,41:40:1440:41:1463:-107.583,0,-105.514	0/1:119:60,59:60:2126:59:2112:-154.526,0,-155.785	0/1:53:36,17:36:1283:17:608:-39.0974,0,-99.818	1/1:73:0,73:0:0:73:2600:-234.247,-21.9752,0	0/1:65:30,35:30:1072:35:1256:-93.7783,0,-77.2255	0/1:156:72,84:72:2588:84:3004:-223.631,0,-186.208	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:119:68,51:68:2423:51:1813:-127.627,0,-182.503	0/1:113:74,39:74:2640:39:1387:-91.1118,0,-203.831	1/1:100:0,100:0:0:100:3592:-323.486,-30.103,0	1/1:104:0,104:0:0:104:3736:-336.439,-31.3071,0
chr02	233887	.	G	A	174088	PASS	AB=0.49258;ABP=4.52491;AC=154;AF=0.827957;AN=186;AO=7975;CIGAR=1X;DP=9606;DPB=9606;DPRA=104.402;EPP=17320.5;EPPR=3538.17;GTI=1;LEN=1;MEANALT=1.03261;MQM=59.9591;MQMR=59.9681;NS=93;NUMALT=1;ODDS=1.6845;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284960;QR=58322;RO=1628;RPL=7975;RPP=17320.5;RPPR=3538.17;RPR=0;RUN=1;SAF=0;SAP=17320.5;SAR=7975;SRF=0;SRP=3538.17;SRR=1628;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	1/1:146:0,145:0:0:145:5171:-465.296,-43.6494,0	0/1:99:63,36:63:2268:36:1288:-86.4216,0,-174.58	0/1:171:74,97:74:2660:97:3455:-259.687,0,-188.169	1/1:100:0,100:0:0:100:3575:-321.957,-30.103,0	1/1:80:0,79:0:0:79:2797:-251.758,-23.7814,0	1/1:164:0,164:0:0:164:5855:-526.868,-49.3689,0	1/1:216:3,213:3:104:213:7605:-674.769,-55.3197,0	1/1:121:0,121:0:0:121:4344:-391.134,-36.4246,0	1/1:130:0,130:0:0:130:4647:-418.392,-39.1339,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	1/1:74:0,74:0:0:74:2648:-238.566,-22.2762,0	0/1:83:53,30:53:1904:30:1076:-72.1674,0,-146.652	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:56:29,27:29:1044:27:953:-69.2256,0,-77.4171	1/1:61:0,61:0:0:61:2187:-197.095,-18.3628,0	1/1:61:0,61:0:0:61:2192:-197.541,-18.3628,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:269:132,137:132:4709:137:4912:-361.251,0,-342.993	0/1:108:49,59:49:1764:59:2096:-156.399,0,-126.528	1/1:152:0,152:0:0:152:5460:-491.526,-45.7566,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	0/1:81:14,67:14:500:67:2396:-191.513,0,-20.9527	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:395:0,395:0:0:395:14112:-1269.76,-118.907,0	1/1:251:1,250:1:36:250:8947:-801.613,-71.9603,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:302:1,301:1:36:301:10756:-964.319,-87.3128,0	1/1:203:6,197:6:216:197:7073:-616.705,-41.3186,0	1/1:121:0,121:0:0:121:4332:-390.056,-36.4246,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:248:0,248:0:0:248:8866:-797.925,-74.6554,0	0/1:224:124,100:124:4420:100:3600:-256.773,0,-330.526	0/1:55:29,26:29:1044:26:936:-68.0028,0,-77.7182	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:195:0,195:0:0:195:6955:-626.012,-58.7009,0	1/1:24:0,24:0:0:24:851:-76.9095,-7.22472,0	0/1:167:75,92:75:2688:92:3277:-244.866,0,-191.893	0/1:71:29,42:29:1040:42:1508:-114.641,0,-72.5412	1/1:71:0,71:0:0:71:2536:-228.489,-21.3731,0	0/1:80:47,33:47:1672:33:1184:-82.7859,0,-126.685	0/1:188:82,106:82:2924:106:3800:-285.586,0,-206.802	1/1:242:1,241:1:36:241:8616:-771.644,-69.251,0	1/1:107:0,107:0:0:107:3836:-345.436,-32.2102,0	1/1:104:0,104:0:0:104:3720:-334.999,-31.3071,0	1/1:171:0,171:0:0:171:6093:-548.474,-51.4761,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:131:73,58:73:2605:58:2072:-147.316,0,-195.262	0/1:52:27,25:27:968:25:892:-64.9461,0,-70.7614	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:107:0,107:0:0:107:3815:-343.548,-32.2102,0	0/1:36:13,23:13:468:23:820:-63.2831,0,-31.6226	0/1:11:2,9:2:68:9:324:-26.1945,0,-3.14638	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:66:0,66:0:0:66:2350:-211.75,-19.868,0	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:209:0,209:0:0:209:7479:-673.154,-62.9153,0	1/1:215:4,210:4:144:210:7481:-660.022,-51.4666,0	0/1:53:32,21:32:1152:21:740:-50.9688,0,-88.0356	1/1:101:0,101:0:0:101:3579:-322.315,-30.404,0	0/1:151:81,70:81:2888:70:2496:-179.438,0,-214.702	1/1:128:1,127:1:36:127:4517:-403.102,-34.9336,0	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:43:0,43:0:0:43:1525:-137.541,-12.9443,0	0/1:88:53,35:53:1908:35:1245:-85.8559,0,-145.507	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:143:0,143:0:0:143:5100:-459.143,-43.0473,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:168:0,168:0:0:168:6007:-540.607,-50.573,0	1/1:152:0,152:0:0:152:5408:-486.851,-45.7566,0	0/1:115:63,52:63:2264:52:1868:-133.781,0,-169.404	1/1:127:1,126:1:36:126:4497:-401.3,-34.6325,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:134:0,134:0:0:134:4800:-432.156,-40.338,0	0/1:104:55,49:55:1976:49:1752:-126.657,0,-146.808	0/1:265:116,149:116:4152:149:5307:-397.612,0,-294.09	0/1:132:67,65:67:2408:65:2332:-170.404,0,-177.24	1/1:52:0,52:0:0:52:1846:-166.419,-15.6536,0	0/1:89:48,41:48:1720:41:1459:-104.814,0,-128.294	0/1:141:73,68:73:2624:68:2431:-176.6,0,-193.962	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:75:0,75:0:0:75:2670:-240.545,-22.5773,0	1/1:72:0,72:0:0:72:2571:-231.639,-21.6742,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:42:33,9:33:1180:9:320:-16.4991,0,-93.8648	0/1:86:60,26:60:2156:26:936:-58.6709,0,-168.418	1/1:121:0,121:0:0:121:4313:-388.346,-36.4246,0	1/1:118:2,116:2:72:116:4141:-366.034,-28.6848,0
chr02	250267	.	T	C	143352	PASS	AB=0.566192;ABP=91.2635;AC=158;AF=0.840426;AN=188;AO=6524;CIGAR=1X;DP=7543;DPB=7543;DPRA=0;EPP=14143.7;EPPR=2200.55;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9801;MQMR=60;NS=94;NUMALT=1;ODDS=11.674;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232967;QR=36205;RO=1016;RPL=3;RPP=14143.7;RPPR=2200.55;RPR=6521;RUN=1;SAF=6524;SAP=14169.7;SAR=0;SRF=1016;SRP=2209.23;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:61:0,61:0:0:61:2177:-196.195,-18.3628,0	1/1:79:0,79:0:0:79:2816:-253.68,-23.7814,0	0/1:138:61,77:61:2173:77:2752:-206.38,0,-154.293	0/1:208:91,117:91:3241:117:4156:-311.608,0,-229.297	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:61:1,60:1:36:60:2121:-187.559,-14.7646,0	1/1:105:0,105:0:0:105:3700:-333.199,-31.6082,0	1/1:73:0,73:0:0:73:2584:-232.808,-21.9752,0	1/1:74:0,74:0:0:74:2636:-237.487,-22.2762,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:69:0,69:0:0:69:2454:-221.114,-20.7711,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	0/1:29:18,11:18:648:11:377:-25.5289,0,-49.922	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:30:13,17:13:468:17:608:-46.0211,0,-33.4287	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:159:61,98:61:2173:98:3507:-267.976,0,-147.971	0/1:137:46,91:46:1587:91:3263:-252.648,0,-101.872	1/1:119:0,119:0:0:119:4265:-383.755,-35.8226,0	1/1:93:0,92:0:0:92:3292:-296.139,-27.6948,0	1/1:73:3,70:3:108:70:2499:-215.087,-11.9,0	1/1:78:0,78:0:0:78:2786:-250.977,-23.4803,0	1/1:268:0,268:0:0:268:9584:-862.514,-80.676,0	1/1:105:1,104:1:36:104:3707:-330.232,-28.0099,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:277:0,277:0:0:277:9873:-888.513,-83.3853,0	1/1:110:2,108:2:72:108:3857:-340.488,-26.2766,0	1/1:105:0,105:0:0:105:3739:-336.712,-31.6082,0	0/1:17:8,9:8:288:9:313:-23.3876,0,-21.1499	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:11:0,11:0:0:11:384:-34.8947,-3.31133,0	0/1:23:9,14:9:324:14:496:-38.0506,0,-22.5822	1/1:133:0,133:0:0:133:4764:-428.917,-40.037,0	0/1:120:50,70:50:1788:70:2508:-189.849,0,-125.079	0/1:20:10,10:10:348:10:360:-26.7237,0,-25.6345	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:219:0,219:0:0:219:7824:-704.189,-65.9256,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:146:55,91:55:1961:91:3238:-247.691,0,-132.813	0/1:37:25,12:25:900:12:432:-28.0831,0,-70.1829	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:104:46,58:46:1629:58:2067:-154.993,0,-115.59	0/1:84:44,40:44:1584:40:1423:-103.08,0,-117.565	1/1:157:0,157:0:0:157:5628:-506.626,-47.2617,0	1/1:115:0,115:0:0:115:4132:-372.062,-34.6185,0	1/1:122:0,121:0:0:121:4311:-387.805,-36.4246,0	1/1:135:0,135:0:0:135:4814:-433.414,-40.6391,0	1/1:17:0,17:0:0:17:591:-53.5147,-5.11751,0	0/1:163:85,78:85:3048:78:2760:-199.57,0,-225.481	0/1:40:14,26:14:489:26:936:-72.5183,0,-32.2977	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:157:0,157:0:0:157:5600:-504.12,-47.2617,0	0/1:49:16,33:16:576:33:1173:-91.1251,0,-37.4245	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:62:1,61:1:36:61:2188:-193.587,-15.0656,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:223:1,222:1:36:222:7928:-709.915,-63.5314,0	1/1:190:0,190:0:0:190:6801:-612.161,-57.1957,0	0/1:70:34,36:34:1205:36:1296:-95.8718,0,-87.6818	1/1:82:0,82:0:0:82:2932:-264.115,-24.6845,0	0/1:136:41,95:41:1457:95:3382:-263.653,0,-90.4839	1/1:149:0,149:0:0:149:5327:-479.564,-44.8535,0	0/1:24:16,8:16:576:8:288:-19.0427,0,-44.9503	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1277	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:188:0,187:0:0:187:6688:-601.675,-56.2926,0	1/1:95:0,95:0:0:95:3364:-302.918,-28.5979,0	1/1:121:0,121:0:0:121:4317:-388.706,-36.4246,0	1/1:193:0,193:0:0:193:6924:-623.225,-58.0988,0	0/1:65:32,33:32:1144:33:1161:-85.2278,0,-83.7026	1/1:90:1,89:1:36:89:3176:-282.467,-23.4944,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:102:0,102:0:0:102:3640:-327.803,-30.7051,0	0/1:59:17,42:17:612:42:1491:-116.723,0,-37.6527	0/1:185:63,122:63:2249:122:4349:-335.894,0,-146.981	0/1:32:20,12:20:701:12:432:-29.5882,0,-53.7788	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	0/1:83:39,44:39:1388:44:1570:-116.602,0,-100.233	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:15:0,15:0:0:15:521:-47.2163,-4.51545,0	0/1:44:24,20:24:852:20:720:-51.8835,0,-63.7551	0/1:45:32,13:32:1140:13:464:-28.5512,0,-89.3629	1/1:146:0,146:0:0:146:5213:-469.308,-43.9504,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0
chr02	274064	.	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chr02	274074	.	G	T	111537	PASS	AB=0.493615;ABP=3.73128;AC=158;AF=0.840426;AN=188;AO=5125;CIGAR=1X;DP=6163;DPB=6163;DPRA=0;EPP=11131.8;EPPR=2250.48;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9793;MQMR=59.9372;NS=94;NUMALT=1;ODDS=2.19596;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182568;QR=36783;RO=1035;RPL=5125;RPP=11131.8;RPPR=2250.48;RPR=0;RUN=1;SAF=5125;SAP=11131.8;SAR=0;SRF=1035;SRP=2250.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1711:-154.275,-14.4494,0	1/1:44:0,44:0:0:44:1571:-141.636,-13.2453,0	0/1:155:81,74:81:2904:74:2614:-188.847,0,-214.936	0/1:97:43,54:43:1531:54:1932:-144.957,0,-108.877	1/1:42:0,42:0:0:42:1491:-134.484,-12.6433,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:88:0,88:0:0:88:3148:-283.546,-26.4906,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	1/1:74:0,74:0:0:74:2625:-236.496,-22.2762,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:14:9,5:9:307:5:180:-12.3376,0,-23.7458	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	0/1:123:54,69:54:1917:69:2471:-185.616,0,-135.779	0/1:211:112,99:112:3995:99:3540:-255.291,0,-296.223	1/1:106:0,106:0:0:106:3770:-339.496,-31.9092,0	1/1:88:0,88:0:0:88:3115:-280.576,-26.4906,0	1/1:48:0,48:0:0:48:1711:-154.275,-14.4494,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:216:0,215:0:0:215:7649:-688.237,-64.7215,0	1/1:172:0,172:0:0:172:6124:-551.257,-51.7772,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:156:0,156:0:0:156:5579:-502.233,-46.9607,0	1/1:96:0,96:0:0:96:3400:-306.215,-28.8989,0	1/1:108:0,108:0:0:108:3849:-346.605,-32.5112,0	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:169:-15.5409,-1.50515,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:97:0,97:0:0:97:3467:-312.242,-29.1999,0	0/1:110:44,66:44:1554:66:2368:-180.261,0,-107.032	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:74:0,74:0:0:74:2623:-236.315,-22.2762,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:124:72,52:72:2571:52:1849:-129.36,0,-194.311	0/1:27:18,9:18:644:9:324:-21.378,0,-50.1628	1/1:30:0,30:0:0:30:1063:-95.9808,-9.0309,0	0/1:153:83,70:83:2965:70:2508:-179.915,0,-221.016	0/1:72:33,39:33:1180:39:1381:-102.913,0,-84.8339	1/1:127:0,127:0:0:127:4547:-409.393,-38.2308,0	1/1:69:0,69:0:0:69:2471:-222.643,-20.7711,0	1/1:97:0,97:0:0:97:3476:-313.051,-29.1999,0	1/1:164:0,164:0:0:164:5835:-525.257,-49.3689,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:90:50,40:50:1770:40:1436:-102.445,0,-132.489	0/1:44:19,25:19:680:25:878:-66.0906,0,-48.2838	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	0/1:22:6,16:6:208:16:568:-44.8292,0,-12.4364	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:57:0,57:0:0:57:2022:-182.252,-17.1587,0	1/1:56:0,56:0:0:56:1995:-179.823,-16.8577,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:186:0,186:0:0:186:6622:-596.062,-55.9916,0	1/1:151:0,151:0:0:151:5385:-484.767,-45.4555,0	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	0/1:157:68,89:68:2412:89:3157:-237.094,0,-169.91	1/1:104:1,103:1:36:103:3658:-325.826,-27.7088,0	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:36:18,18:18:640:18:631:-46.2786,0,-47.0922	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	1/1:170:0,170:0:0:170:6061:-545.594,-51.1751,0	1/1:47:0,47:0:0:47:1637:-147.614,-14.1484,0	1/1:88:0,88:0:0:88:3134:-282.283,-26.4906,0	1/1:123:0,123:0:0:123:4392:-395.452,-37.0267,0	0/1:87:52,35:52:1836:35:1256:-87.1511,0,-139.32	1/1:64:0,64:0:0:64:2260:-203.661,-19.2659,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:57:0,57:0:0:57:2001:-180.36,-17.1587,0	0/1:64:43,21:43:1535:21:756:-49.1013,0,-119.176	0/1:145:76,69:76:2681:69:2467:-178.634,0,-197.883	0/1:35:12,23:12:413:23:796:-61.4189,0,-26.9618	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:77:42,35:42:1472:35:1247:-89.3548,0,-109.592	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:28:0,28:0:0:28:991:-89.5035,-8.42884,0	1/1:28:0,28:0:0:28:1000:-90.312,-8.42884,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:32:13,19:13:456:19:672:-51.1739,0,-31.7403	0/1:42:25,17:25:892:17:604:-42.0427,0,-67.9564	1/1:306:3,302:3:104:302:10744:-957.16,-82.4678,0	1/1:38:0,37:0:0:37:1320:-118.742,-11.1381,0
chr02	307025	.	C	T	20638.3	PASS	AB=0.503257;ABP=3.18006;AC=29;AF=0.154255;AN=188;AO=932;CIGAR=1X;DP=5007;DPB=5007;DPRA=1.41024;EPP=3.04758;EPPR=43.0264;GTI=1;LEN=1;MEANALT=1;MQM=59.6545;MQMR=59.9669;NS=94;NUMALT=1;ODDS=0.319354;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32949;QR=144273;RO=4074;RPL=932;RPP=2026.82;RPPR=8849.59;RPR=0;RUN=1;SAF=464;SAP=3.04758;SAR=468;SRF=1900;SRP=43.0264;SRR=2174;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/1:65:29,36:29:1003:36:1243:-92.587,0,-71.0098	0/1:75:40,35:40:1436:35:1247:-89.955,0,-106.96	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:29:29,0:29:1006:0:0:0,-8.72987,-90.8466	0/0:70:70,0:70:2446:0:0:0,-21.0721,-220.391	0/0:54:54,0:54:1922:0:0:0,-16.2556,-173.256	0/0:47:47,0:47:1658:0:0:0,-14.1484,-149.504	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/0:101:101,0:101:3605:0:0:0,-30.404,-324.655	0/0:80:80,0:80:2839:0:0:0,-24.0824,-255.747	0/0:103:103,0:103:3668:0:0:0,-31.0061,-330.323	0/1:102:47,55:47:1666:55:1972:-146.933,0,-119.521	0/0:83:83,0:83:2970:0:0:0,-24.9855,-267.532	0/1:89:47,42:47:1660:42:1481:-106.791,0,-122.893	0/0:98:98,0:98:3431:0:0:0,-29.5009,-309.004	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.613	0/0:86:86,0:86:3013:0:0:0,-25.8886,-271.401	0/1:76:34,42:34:1206:42:1499:-112.315,0,-85.9662	0/1:73:35,38:35:1226:38:1329:-97.9325,0,-88.6645	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:33:32,1:32:1135:1:36:0,-6.33571,-98.8564	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/0:84:84,0:84:2975:0:0:0,-25.2865,-267.982	0/0:76:76,0:76:2692:0:0:0,-22.8783,-242.524	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/0:84:84,0:84:2993:0:0:0,-25.2865,-269.601	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:205:205,0:205:7293:0:0:0,-61.7111,-656.425	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	0/1:66:35,31:35:1221:31:1090:-78.5306,0,-90.3233	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:52:51,1:51:1811:1:36:0,-12.0553,-159.673	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/1:49:30,19:30:1057:19:680:-46.7787,0,-80.6885	0/1:77:40,37:40:1428:37:1312:-95.202,0,-105.638	0/0:81:81,0:81:2837:0:0:0,-24.3834,-255.567	0/1:27:6,21:6:216:21:741:-58.8388,0,-11.6627	0/1:40:21,19:21:748:19:680:-49.488,0,-55.6041	0/0:58:58,0:58:2037:0:0:0,-17.4597,-183.598	0/0:27:27,0:27:941:0:0:0,-8.12781,-85.0002	0/0:62:62,0:62:2155:0:0:0,-18.6639,-194.21	0/0:60:59,1:59:2096:1:36:0,-14.4635,-185.312	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/1:52:19,33:19:676:33:1188:-91.5607,0,-45.5082	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/1:11:7,4:7:244:4:144:-10.0014,0,-18.9881	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/0:101:101,0:101:3588:0:0:0,-30.404,-323.116	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:29:29,0:29:1008:0:0:0,-8.72987,-91.0281	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/1:27:17,10:17:608:10:351:-23.7989,0,-46.9242	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:54:27,27:27:968:27:964:-70.8212,0,-71.1808	0/0:37:37,0:37:1306:0:0:0,-11.1381,-117.84	0/1:65:39,26:39:1391:26:898:-61.5615,0,-105.921	0/0:26:26,0:26:914:0:0:0,-7.82678,-82.5747	0/1:117:58,59:58:2056:59:2044:-148.778,0,-150.088	0/0:16:16,0:16:546:0:0:0,-4.81648,-49.4593	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:34:34,0:34:1188:0:0:0,-10.235,-107.222	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.443	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/1:36:23,13:23:809:13:468:-31.6226,0,-62.2912	0/0:56:56,0:56:1965:0:0:0,-16.8577,-177.123	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:62:62,0:62:2150:0:0:0,-18.6639,-193.763	0/1:49:20,29:20:720:29:1028:-78.0569,0,-50.3783	0/1:83:37,46:37:1315:46:1633:-121.64,0,-93.6655	0/1:112:63,49:63:2224:49:1731:-122.354,0,-166.706	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/1:107:55,52:55:1941:52:1823:-132.127,0,-142.754	0/1:183:90,93:90:3175:93:3286:-240.492,0,-230.886	0/0:34:34,0:34:1199:0:0:0,-10.235,-108.215	0/0:90:89,1:89:3109:1:36:0,-23.4944,-276.437	0/0:63:62,0:62:2220:0:0:0,-18.6639,-199.649	0/0:71:71,0:71:2544:0:0:0,-21.3731,-228.941	0/1:97:52,45:52:1826:45:1612:-116.131,0,-134.928	0/1:62:17,45:17:608:45:1575:-123.367,0,-36.3882	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/0:147:146,1:146:5191:1:34:0,-40.8531,-463.895
chr02	321149	.	G	T	74965.1	PASS	AB=0.45085;ABP=37.5905;AC=157;AF=0.844086;AN=186;AO=3466;CIGAR=1X;DP=4375;DPB=4375;DPRA=0;EPP=7511.97;EPPR=1972.54;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.5868;MQMR=59.9978;NS=93;NUMALT=1;ODDS=0.720351;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123971;QR=32146;RO=907;RPL=2;RPP=7511.97;RPPR=1972.54;RPR=3464;RUN=1;SAF=0;SAP=7529.33;SAR=3466;SRF=0;SRP=1972.54;SRR=907;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:356:-32.3809,-3.0103,0	1/1:61:0,61:0:0:61:2169:-195.457,-18.3628,0	0/1:51:31,20:31:1112:20:720:-49.7665,0,-85.0388	0/1:86:51,34:51:1823:34:1190:-81.4431,0,-138.403	1/1:39:0,39:0:0:39:1385:-124.933,-11.7402,0	1/1:28:0,28:0:0:28:996:-89.9467,-8.42884,0	1/1:38:0,38:0:0:38:1364:-123.054,-11.4391,0	1/1:45:0,45:0:0:45:1620:-146.082,-13.5464,0	1/1:74:0,74:0:0:74:2660:-239.605,-22.2762,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:44:0,44:0:0:44:1572:-141.46,-13.2453,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:35:0,35:0:0:35:1254:-113.155,-10.5361,0	0/1:76:38,38:38:1346:38:1351:-98.9939,0,-98.5604	1/1:36:0,36:0:0:36:1288:-116.221,-10.8371,0	0/1:47:19,28:19:656:28:1004:-76.5203,0,-45.211	1/1:57:0,57:0:0:57:2029:-182.865,-17.1587,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:17:0,17:0:0:17:608:-55.0356,-5.11751,0	0/1:78:49,28:49:1737:28:1004:-67.1082,0,-133.074	0/1:100:57,43:57:2044:43:1521:-107.073,0,-154.129	1/1:64:0,64:0:0:64:2295:-206.81,-19.2659,0	1/1:52:0,52:0:0:52:1844:-166.178,-15.6536,0	1/1:65:2,63:2:72:63:2252:-195.994,-12.7302,0	1/1:39:0,39:0:0:39:1400:-126.242,-11.7402,0	1/1:115:0,115:0:0:115:4102:-369.355,-34.6185,0	1/1:58:0,58:0:0:58:2067:-186.266,-17.4597,0	1/1:14:0,14:0:0:14:504:-45.6935,-4.21442,0	1/1:67:0,67:0:0:67:2393:-215.607,-20.169,0	1/1:86:0,86:0:0:86:3079:-277.332,-25.8886,0	1/1:60:0,60:0:0:60:2148:-193.551,-18.0618,0	1/1:10:0,10:0:0:10:352:-31.9607,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:119:0,119:0:0:119:4264:-383.928,-35.8226,0	0/1:110:58,52:58:2056:52:1868:-135.087,0,-152.196	0/1:37:17,20:17:581:20:709:-52.9796,0,-41.4721	.:.:.:.:.:.:.:.	1/1:72:0,72:0:0:72:2572:-231.545,-21.6742,0	1/1:25:0,25:0:0:25:887:-80.1389,-7.52575,0	0/1:75:43,32:43:1514:32:1146:-80.871,0,-113.974	0/1:37:17,20:17:599:20:703:-52.4532,0,-43.1	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:59:28,31:28:1004:31:1108:-82.2702,0,-72.9151	0/1:45:37,8:37:1324:8:288:-12.7128,0,-105.916	1/1:70:0,70:0:0:70:2512:-226.326,-21.0721,0	1/1:63:0,63:0:0:63:2260:-203.656,-18.9649,0	1/1:45:0,45:0:0:45:1611:-145.265,-13.5464,0	1/1:78:0,78:0:0:78:2804:-252.597,-23.4803,0	1/1:8:0,8:0:0:8:288:-26.265,-2.40824,0	0/1:74:42,32:42:1480:32:1148:-81.3373,0,-111.215	0/1:44:20,24:20:716:24:852:-63.7532,0,-51.5224	1/1:8:0,8:0:0:8:284:-25.8951,-2.40824,0	1/1:47:0,47:0:0:47:1677:-151.211,-14.1484,0	0/1:30:20,10:20:705:10:360:-23.6264,0,-54.7419	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:11:0,11:0:0:11:396:-35.9818,-3.31133,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:66:0,66:0:0:66:2367:-213.276,-19.868,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:60:0,60:0:0:60:2144:-193.166,-18.0618,0	1/1:86:1,85:1:36:85:3025:-268.502,-22.2903,0	0/1:33:18,15:18:644:15:536:-38.2086,0,-48.3566	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	0/1:69:47,22:47:1661:22:792:-50.8323,0,-129.004	1/1:52:0,52:0:0:52:1854:-167.127,-15.6536,0	0/1:15:10,5:10:351:5:180:-12.0366,0,-27.4112	1/1:51:0,51:0:0:51:1815:-163.63,-15.3525,0	0/1:91:44,47:44:1550:47:1684:-124.423,0,-112.397	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:28:0,28:0:0:28:1008:-90.8332,-8.42884,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:111:0,111:0:0:111:3956:-355.933,-33.4143,0	1/1:42:0,42:0:0:42:1508:-136.008,-12.6433,0	0/1:35:20,15:20:720:15:536:-38.0388,0,-54.5927	1/1:43:0,43:0:0:43:1548:-139.605,-12.9443,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:40:0,40:0:0:40:1436:-129.533,-12.0412,0	0/1:47:25,22:25:881:22:784:-56.6318,0,-65.4575	0/1:84:39,45:39:1384:45:1616:-120.436,0,-99.5723	0/1:76:36,40:36:1221:40:1432:-106.299,0,-87.3049	1/1:39:0,39:0:0:39:1400:-126.297,-11.7402,0	0/1:36:14,22:14:500:22:792:-60.7593,0,-34.4991	0/1:97:59,38:59:2120:38:1361:-93.585,0,-161.869	1/1:30:0,30:0:0:30:1076:-97.1447,-9.0309,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:41:0,41:0:0:41:1466:-132.209,-12.3422,0	1/1:34:0,34:0:0:34:1216:-109.735,-10.235,0	0/1:78:42,36:42:1485:36:1296:-93.4636,0,-110.462	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	1/1:26:1,25:1:36:25:896:-77.3597,-4.22851,0	1/1:49:0,49:0:0:49:1752:-157.949,-14.7505,0
chr02	441633	.	T	C	31379.6	PASS	AB=0.489162;ABP=6.91714;AC=31;AF=0.164894;AN=188;AO=1886;CIGAR=1X;DP=11316;DPB=11316;DPRA=1.44844;EPP=4089.73;EPPR=20391.1;GTI=0;LEN=1;MEANALT=1.02381;MQM=59.5854;MQMR=59.949;NS=94;NUMALT=1;ODDS=1.9716;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67374;QR=337940;RO=9429;RPL=1885;RPP=4089.73;RPPR=20391.1;RPR=1;RUN=1;SAF=0;SAP=4098.41;SAR=1886;SRF=2;SRP=20460.5;SRR=9427;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:152:152,0:152:5468:0:0:0,-45.7566,-492.245	0/1:337:175,162:175:6258:162:5802:-420.61,0,-461.856	0/1:230:125,105:125:4450:105:3753:-268.725,0,-331.433	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.459	0/0:212:212,0:212:7575:0:0:0,-63.8184,-681.783	0/0:174:174,0:174:6213:0:0:0,-52.3792,-559.266	0/0:157:156,1:156:5593:1:36:0,-43.6634,-499.879	0/0:175:175,0:175:6249:0:0:0,-52.6802,-562.419	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:86:86,0:86:3084:0:0:0,-25.8886,-276.837	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:51:25,26:25:896:26:928:-68.4857,0,-65.5628	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/1:51:21,30:21:756:30:1071:-81.3429,0,-53.0147	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.135	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.875	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:224:115,109:115:4128:109:3899:-283.648,0,-304.269	0/1:195:89,106:89:3177:106:3791:-282.623,0,-227.452	0/0:226:225,1:225:8065:1:36:0,-64.4345,-722.266	0/0:118:118,0:118:4210:0:0:0,-35.5215,-379.078	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.66	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/0:394:394,0:394:14156:0:0:0,-118.606,-1273.79	0/0:290:289,1:289:10342:1:36:0,-83.7004,-927.101	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:353:352,1:352:12632:1:32:0,-103.064,-1133.5	0/0:125:125,0:125:4469:0:0:0,-37.6287,-402.374	0/0:158:158,0:158:5684:0:0:0,-47.5627,-511.675	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:208:208,0:208:7461:0:0:0,-62.6142,-671.523	0/1:200:92,108:92:3296:108:3835:-285.095,0,-236.653	0/1:58:35,23:35:1256:23:796:-54.487,0,-95.8855	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:180:180,0:180:6438:0:0:0,-54.1854,-579.463	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:144:81,63:81:2897:63:2264:-160.664,0,-217.587	0/1:67:29,38:29:1044:38:1360:-102.525,0,-74.1058	0/1:48:24,24:24:860:24:849:-62.2791,0,-63.2724	0/1:169:84,84:84:3020:84:2996:-218.927,0,-221.097	0/1:158:65,93:65:2317:93:3324:-251.372,0,-161.226	0/0:346:345,1:345:12380:1:36:0,-100.561,-1110.43	0/0:170:169,1:169:6064:1:36:0,-47.5768,-542.224	0/0:182:182,0:182:6518:0:0:0,-54.7875,-586.699	0/0:213:213,0:213:7621:0:0:0,-64.1194,-685.925	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:150:79,71:79:2844:71:2544:-184.01,0,-211.043	0/1:48:19,29:19:684:29:1040:-79.4636,0,-47.4409	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:134:134,0:134:4816:0:0:0,-40.338,-433.585	0/1:54:35,19:35:1256:19:684:-45.6324,0,-97.0851	0/1:12:2,10:2:72:10:360:-29.1228,0,-3.22436	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:95:95,0:95:3420:0:0:0,-28.5978,-308.012	0/1:110:62,48:62:2228:48:1724:-122.239,0,-167.671	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:310:310,0:310:11113:0:0:0,-93.3193,-1000.05	0/0:227:224,3:224:8048:3:108:0,-58.2586,-714.258	0/0:95:94,1:94:3365:1:32:0,-25.3985,-299.837	0/0:124:124,0:124:4443:0:0:0,-37.3277,-400.039	0/1:203:117,86:117:4196:86:3080:-216.208,0,-316.711	0/0:175:174,1:174:6248:1:36:0,-49.082,-558.812	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/0:125:125,0:125:4453:0:0:0,-37.6287,-400.941	0/1:68:35,33:35:1260:33:1180:-86.0353,0,-93.2354	0/0:21:21,0:21:741:0:0:0,-6.32163,-66.9666	0/0:154:154,0:154:5512:0:0:0,-46.3586,-496.205	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.348	0/0:166:166,0:166:5945:0:0:0,-49.971,-535.099	0/0:255:255,0:255:9140:0:0:0,-76.7626,-822.572	0/1:201:106,95:106:3769:95:3373:-243.148,0,-278.9	0/0:103:102,1:102:3668:1:36:0,-27.4078,-326.719	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:130:129,1:129:4613:1:36:0,-35.5356,-411.732	0/1:171:79,92:79:2817:92:3266:-241.863,0,-202.289	0/1:330:155,175:155:5526:175:6263:-464.412,0,-397.755	0/1:130:83,47:83:2976:47:1680:-112.346,0,-228.938	0/0:92:92,0:92:3312:0:0:0,-27.6948,-298.297	0/1:94:54,40:54:1932:40:1432:-100.876,0,-145.86	0/1:162:86,76:86:3092:76:2720:-195.91,0,-229.74	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.839	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.068	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:67:48,19:48:1720:19:680:-41.2847,0,-134.916	0/1:76:20,56:20:716:56:2004:-157.753,0,-41.8894	0/0:103:103,0:103:3689:0:0:0,-31.0061,-332.174	0/0:137:137,0:137:4924:0:0:0,-41.2411,-443.308
chr02	543805	.	GCAGA	ACAGA,ACAGG	104974	PASS	AB=0.597872,0.398582;ABP=120.325,128.98;AC=152,32;AF=0.826087,0.173913;AN=184;AO=4337,568;CIGAR=1X4M,1X3M1X;DP=4927;DPB=4927.8;DPRA=0,0.773285;EPP=9412,1227.74;EPPR=5.18177;GTI=4;LEN=1,5;MEANALT=1.63043,2.24324;MQM=42.867,41.1373;MQMR=46;NS=92;NUMALT=2;ODDS=0.543406;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=72,72;PQR=0;PRO=0;QA=155212,19939;QR=36;RO=1;RPL=4336,568;RPP=9412,1236.41;RPPR=5.18177;RPR=1,0;RUN=1,1;SAF=4337,567;SAP=9420.69,1227.74;SAR=0,1;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16,0:0:0:16,0:576,0:-51.0318,-4.81648,0,-51.0318,-4.81648,-51.0318	1/1:44:0,42,0:0:0:42,0:1508,0:-132.885,-12.6433,0,-132.885,-12.6433,-132.885	1/2:102:0,59,42:0:0:59,42:2100,1467:-282.902,-115.634,-97.8734,-167.308,0,-154.665	1/2:117:0,76,41:0:0:76,41:2708,1442:-328.403,-112.844,-89.9657,-215.901,0,-203.559	1/1:21:0,21,0:0:0:21,0:756,0:-66.9128,-6.32163,0,-66.9128,-6.32163,-66.9128	1/1:15:0,15,0:0:0:15,0:525,0:-46.6086,-4.51545,0,-46.6086,-4.51545,-46.6086	1/1:67:0,67,0:0:0:67,0:2404,0:-211.83,-20.169,0,-211.83,-20.169,-211.83	1/1:51:0,51,0:0:0:51,0:1825,0:-160.902,-15.3525,0,-160.902,-15.3525,-160.902	1/1:45:0,45,0:0:0:45,0:1605,0:-141.537,-13.5464,0,-141.537,-13.5464,-141.537	1/1:61:0,61,0:0:0:61,0:2196,0:-193.583,-18.3628,0,-193.583,-18.3628,-193.583	1/1:33:0,33,0:0:0:33,0:1184,0:-104.396,-9.93399,0,-104.396,-9.93399,-104.396	1/1:73:0,73,0:0:0:73,0:2624,0:-231.277,-21.9752,0,-231.277,-21.9752,-231.277	1/1:62:0,62,0:0:0:62,0:2232,0:-196.802,-18.6639,0,-196.802,-18.6639,-196.802	1/2:32:0,17,14:0:0:17,14:612,499:-88.2049,-39.5157,-34.3982,-48.8162,0,-44.6018	1/1:50:0,49,0:0:0:49,0:1756,0:-154.492,-14.7505,0,-154.492,-14.7505,-154.492	1/2:42:0,26,16:0:0:26,16:936,555:-118.504,-43.9577,-36.1309,-74.8888,0,-70.0723	1/1:17:0,17,0:0:0:17,0:608,0:-53.8799,-5.11751,0,-53.8799,-5.11751,-53.8799	1/1:16:0,16,0:0:0:16,0:576,0:-51.0351,-4.81648,0,-51.0351,-4.81648,-51.0351	1/1:8:0,8,0:0:0:8,0:288,0:-25.7004,-2.40824,0,-25.7004,-2.40824,-25.7004	1/2:69:0,61,8:0:0:61,8:2180,280:-195.747,-22.3118,-3.94899,-173.723,0,-171.315	1/2:98:0,51,46:0:0:51,46:1821,1588:-269.145,-124.373,-109.021,-144.802,0,-130.954	1/1:68:0,67,0:0:0:67,0:2403,0:-211.446,-20.169,0,-211.446,-20.169,-211.446	1/1:52:0,50,1:0:0:50,1:1792,36:-157.78,-15.0515,0,-154.972,-12.1894,-154.671	1/1:48:0,47,1:0:0:47,1:1678,36:-147.817,-14.1484,0,-144.986,-10.9687,-144.685	1/1:37:0,37,0:0:0:37,0:1317,0:-116.192,-11.1381,0,-116.192,-11.1381,-116.192	1/1:161:0,161,0:0:0:161,0:5776,0:-508.275,-48.4658,0,-508.275,-48.4658,-508.275	1/1:125:0,125,0:0:0:125,0:4492,0:-395.592,-37.6288,0,-395.592,-37.6288,-395.592	1/1:22:0,22,0:0:0:22,0:792,0:-69.9951,-6.62266,0,-69.9951,-6.62266,-69.9951	1/1:183:0,183,0:0:0:183,0:6546,0:-576.26,-55.0885,0,-576.26,-55.0885,-576.26	1/1:84:0,84,0:0:0:84,0:3016,0:-265.759,-25.2865,0,-265.759,-25.2865,-265.759	1/2:70:0,40,30:0:0:40,30:1431,1058:-196.695,-83.0606,-71.0194,-113.978,0,-104.947	1/1:7:0,7,0:0:0:7,0:252,0:-22.5345,-2.10721,0,-22.5345,-2.10721,-22.5345	1/1:14:0,14,0:0:0:14,0:500,0:-44.3589,-4.21442,0,-44.3589,-4.21442,-44.3589	.:.:.:.:.:.:.:.	1/1:7:0,6,0:0:0:6,0:216,0:-19.1131,-1.80618,0,-19.1131,-1.80618,-19.1131	1/2:12:0,8,4:0:0:8,4:284,143:-34.2385,-11.6023,-9.19407,-22.9828,0,-21.7787	1/1:98:0,98,0:0:0:98,0:3524,0:-310.338,-29.5009,0,-310.338,-29.5009,-310.338	1/2:56:0,34,22:0:0:34,22:1215,774:-157.926,-61.4058,-51.1708,-96.8646,0,-90.242	1/2:20:0,13,7:0:0:13,7:464,240:-56.2998,-19.3497,-15.4364,-37.2901,0,-35.1829	.:.:.:.:.:.:.:.	1/1:78:0,78,0:0:0:78,0:2781,0:-245.148,-23.4803,0,-245.148,-23.4803,-245.148	1/1:19:0,19,0:0:0:19,0:684,0:-60.5862,-5.71957,0,-60.5862,-5.71957,-60.5862	1/2:51:0,26,25:0:0:26,25:932,893:-144.878,-70.6154,-62.7886,-74.6105,0,-67.0847	1/2:16:0,10,6:0:0:10,6:360,211:-45.5086,-16.8214,-13.8111,-29.0309,0,-27.2247	1/2:27:0,10,17:0:0:10,17:356,590:-74.7275,-46.3485,-43.3382,-28.7223,0,-23.6048	1/2:34:0,16,18:0:0:16,18:570,641:-95.5591,-50.324,-45.5075,-45.58,0,-40.1614	1/2:41:0,17,24:0:0:17,24:593,855:-114.752,-67.7091,-62.5916,-47.3859,0,-40.1612	1/1:121:0,121,0:0:0:121,0:4348,0:-382.932,-36.4246,0,-382.932,-36.4246,-382.932	1/1:75:0,74,0:0:0:74,0:2652,0:-233.519,-22.2762,0,-233.519,-22.2762,-233.519	1/1:79:0,78,0:0:0:78,0:2772,0:-243.428,-23.4803,0,-243.428,-23.4803,-243.428	1/1:77:0,77,0:0:0:77,0:2757,0:-242.324,-23.1793,0,-242.324,-23.1793,-242.324	1/1:4:0,4,0:0:0:4,0:144,0:-13.0277,-1.20412,0,-13.0277,-1.20412,-13.0277	1/2:51:0,36,15:0:0:36,15:1296,538:-145.921,-42.7838,-31.9468,-103.487,0,-98.9711	1/2:23:0,13,10:0:0:13,10:464,337:-63.6704,-26.6938,-22.7804,-37.313,0,-34.3027	1/2:8:0,7,1:0:0:7,1:252,36:-23.1366,-3.08657,-0.97936,-20.3904,0,-20.0894	1/1:93:0,92,0:0:0:92,0:3300,0:-290.431,-27.6948,0,-290.431,-27.6948,-290.431	1/2:16:0,12,4:0:0:12,4:432,144:-45.997,-11.5775,-7.96514,-34.7666,0,-33.5625	1/2:4:0,3,1:0:0:3,1:108,36:-11.7621,-3.15346,-2.25037,-8.95573,0,-8.6547	1/1:11:0,11,0:0:0:11,0:385,0:-34.0089,-3.31133,0,-34.0089,-3.31133,-34.0089	1/1:61:0,61,0:0:0:6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chr02	554218	.	C	T	26347.2	PASS	AB=0.529993;ABP=25.9358;AC=31;AF=0.166667;AN=186;AO=1565;CIGAR=1X;DP=8556;DPB=8556;DPRA=1.19026;EPP=3401.36;EPPR=15168.6;GTI=1;LEN=1;MEANALT=1.05263;MQM=59.977;MQMR=59.9928;NS=93;NUMALT=1;ODDS=0.703748;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55558;QR=249454;RO=6988;RPL=1565;RPP=3401.36;RPPR=15177.3;RPR=0;RUN=1;SAF=0;SAP=3401.36;SAR=1565;SRF=1;SRP=15168.6;SRR=6987;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:137:137,0:137:4870:0:0:0,-41.2411,-438.453	0/1:102:69,33:69:2472:33:1169:-74.8102,0,-192.029	0/1:224:99,125:99:3524:125:4461:-334.229,0,-249.941	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/0:118:118,0:118:4201:0:0:0,-35.5215,-378.272	0/0:115:115,0:115:4105:0:0:0,-34.6184,-369.634	0/0:200:199,1:199:7068:1:36:0,-56.6077,-632.585	0/0:127:127,0:127:4540:0:0:0,-38.2308,-408.768	0/0:185:185,0:185:6601:0:0:0,-55.6905,-594.171	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/0:63:62,1:62:2224:1:36:0,-15.3666,-196.826	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/1:77:36,41:36:1292:41:1476:-109.957,0,-93.4045	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:40:19,21:19:684:21:756:-56.3214,0,-49.8491	0/0:97:97,0:97:3475:0:0:0,-29.1999,-312.961	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:167:70,97:70:2512:97:3431:-258.729,0,-176.06	0/1:69:27,42:27:972:42:1493:-113.891,0,-67.0268	0/0:93:93,0:93:3310:0:0:0,-27.9958,-298.116	0/0:105:105,0:105:3725:0:0:0,-31.6081,-335.452	0/0:135:133,2:133:4764:2:72:0,-33.8023,-422.08	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.789	0/0:351:351,0:351:12455:0:0:0,-105.662,-1120.79	0/0:167:167,0:167:5965:0:0:0,-50.272,-536.957	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/0:185:185,0:185:6602:0:0:0,-55.6905,-594.259	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/1:169:84,85:84:2984:85:2994:-218.817,0,-217.92	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:200:200,0:200:7164:0:0:0,-60.206,-644.811	0/1:92:46,46:46:1632:46:1617:-118.109,0,-119.474	0/1:48:22,26:22:784:26:928:-69.3888,0,-56.4345	.:.:.:.:.:.:.:.	0/0:135:135,0:135:4821:0:0:0,-40.639,-434.044	0/0:30:30,0:30:1071:0:0:0,-9.0309,-96.7016	0/1:83:43,40:43:1548:40:1417:-102.84,0,-114.628	0/1:86:42,44:42:1481:44:1580:-116.603,0,-107.694	0/1:83:43,40:43:1540:40:1425:-103.562,0,-113.908	0/1:127:61,65:61:2165:65:2298:-168.789,0,-156.826	0/1:111:56,55:56:1996:55:1972:-144.341,0,-146.5	0/0:210:210,0:210:7508:0:0:0,-63.2163,-675.763	0/0:57:57,0:57:2006:0:0:0,-17.1587,-180.81	0/0:152:152,0:152:5444:0:0:0,-45.7566,-490.089	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:83:36,47:36:1265:47:1657:-124.43,0,-89.1651	0/1:41:19,22:19:684:22:792:-59.2634,0,-49.5481	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/1:73:36,37:36:1284:37:1286:-94.0615,0,-93.8882	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/1:95:51,44:51:1832:44:1546:-110.828,0,-136.563	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:221:220,1:220:7861:1:36:0,-62.9294,-703.919	0/0:156:155,1:155:5518:1:36:0,-43.3624,-493.147	0/0:50:49,1:49:1760:1:36:0,-11.4532,-155.086	0/0:87:87,0:87:3086:0:0:0,-26.1896,-277.966	0/1:113:51,62:51:1836:62:2220:-166.048,0,-131.487	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.948	0/1:24:11,13:11:392:13:451:-33.6951,0,-28.3953	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:80:43,37:43:1544:37:1294:-92.6746,0,-115.171	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.149	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.322	0/0:123:122,0:122:4342:0:0:0,-36.7257,-390.594	0/1:181:61,120:61:2177:120:4239:-327.203,0,-141.708	0/0:135:135,0:135:4836:0:0:0,-40.639,-435.394	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:133:133,0:133:4752:0:0:0,-40.037,-427.839	0/1:126:62,63:62:2201:63:2230:-162.969,0,-160.365	0/1:139:66,73:66:2360:73:2620:-194.204,0,-170.816	0/1:112:42,70:42:1512:70:2488:-190.458,0,-102.659	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.194	0/1:93:48,45:48:1720:45:1593:-115.662,0,-127.09	0/1:143:67,76:67:2392:76:2697:-199.927,0,-172.49	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.747	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:78:38,40:38:1360:40:1436:-106.057,0,-99.2203	0/1:62:20,42:20:716:42:1488:-115.548,0,-46.1039	0/0:141:141,0:141:5041:0:0:0,-42.4452,-453.835	0/0:102:99,3:99:3536:3:108:0,-20.6299,-308.375
chr02	573185	.	G	A	118024	PASS	AB=0.463482;ABP=28.2271;AC=156;AF=0.829787;AN=188;AO=5391;CIGAR=1X;DP=6583;DPB=6583;DPRA=0;EPP=11605.4;EPPR=2552.44;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.954;MQMR=59.9445;NS=94;NUMALT=1;ODDS=3.56783;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192647;QR=42216;RO=1190;RPL=12;RPP=11605.4;RPPR=2543.82;RPR=5379;RUN=1;SAF=0;SAP=11709.4;SAR=5391;SRF=1;SRP=2578.38;SRR=1189;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	1/1:101:0,101:0:0:101:3603:-324.475,-30.404,0	0/1:95:53,42:53:1869:42:1508:-107.417,0,-139.889	0/1:81:56,25:56:1996:25:892:-56.2163,0,-155.531	1/1:63:0,63:0:0:63:2245:-202.311,-18.9649,0	1/1:63:0,63:0:0:63:2256:-203.113,-18.9649,0	1/1:121:2,119:2:57:119:4264:-378.255,-31.0113,0	1/1:130:1,128:1:36:128:4588:-409.56,-35.5195,0	1/1:98:0,98:0:0:98:3499:-315.12,-29.5009,0	1/1:84:0,84:0:0:84:3001:-270.32,-25.2865,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:28:1,27:1:36:27:972:-84.1996,-4.83057,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:32:22,10:22:788:10:359:-23.0026,0,-61.6118	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:37:25,12:25:881:12:423:-27.267,0,-68.4678	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	0/1:120:69,51:69:2468:51:1819:-127.867,0,-186.251	0/1:144:66,78:66:2334:78:2794:-208.352,0,-166.971	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:111:8,103:8:288:103:3677:-304.865,-7.14692,0	1/1:73:0,73:0:0:73:2602:-234.427,-21.9752,0	1/1:227:0,227:0:0:227:8120:-730.686,-68.3338,0	1/1:259:0,259:0:0:259:9240:-831.57,-77.9668,0	1/1:23:1,22:1:36:22:792:-68.0074,-3.32542,0	1/1:239:0,239:0:0:239:8559:-770.3,-71.9462,0	1/1:101:0,101:0:0:101:3611:-325.196,-30.404,0	0/1:39:20,19:20:712:19:684:-50.1502,0,-52.6665	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:1,5:1:36:5:172:-14.0112,0,-1.79209	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:9:6,3:6:207:3:108:-7.3659,0,-16.2576	1/1:115:0,115:0:0:115:4112:-370.192,-34.6185,0	0/1:172:77,95:77:2760:95:3381:-252.726,0,-196.863	0/1:36:20,16:20:707:16:572:-40.9763,0,-53.1144	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:129:2,127:2:72:127:4527:-400.76,-31.9961,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:68:42,26:42:1508:26:936:-64.0894,0,-115.545	0/1:37:20,17:20:707:17:612:-44.2753,0,-52.8165	0/1:42:24,18:24:830:18:635:-44.8337,0,-62.3691	0/1:87:58,29:58:2058:29:1044:-67.9553,0,-159.301	0/1:114:38,75:38:1339:75:2700:-209.015,0,-86.5792	1/1:106:0,106:0:0:106:3796:-341.838,-31.9092,0	1/1:83:0,83:0:0:83:2954:-266.093,-24.9855,0	1/1:110:0,110:0:0:110:3944:-355.151,-33.1133,0	1/1:139:0,139:0:0:139:4976:-447.988,-41.8432,0	1/1:5:0,5:0:0:5:171:-15.7237,-1.50515,0	0/1:82:37,45:37:1332:45:1601:-119.695,0,-95.4964	0/1:60:20,40:20:720:40:1436:-111.474,0,-47.067	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	0/1:64:41,23:41:1459:23:812:-54.135,0,-112.339	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:75:45,30:45:1562:30:1067:-73.764,0,-118.289	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:129:0,129:0:0:129:4608:-414.623,-38.8329,0	1/1:139:1,138:1:27:138:4923:-440.519,-39.1434,0	1/1:67:5,62:5:176:62:2216:-183.517,-3.98399,0	1/1:22:0,22:0:0:22:778:-70.3424,-6.62266,0	0/1:146:68,78:68:2423:78:2743:-203.159,0,-174.306	1/1:76:0,76:0:0:76:2723:-245.312,-22.8783,0	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	1/1:105:0,105:0:0:105:3764:-338.959,-31.6082,0	0/1:41:27,14:27:972:14:474:-30.6375,0,-75.3859	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:99:1,98:1:32:98:3516:-313.449,-26.6027,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:91:0,91:0:0:91:3250:-292.72,-27.3937,0	1/1:143:0,143:0:0:143:5127:-461.311,-43.0473,0	0/1:60:42,18:42:1504:18:648:-40.5901,0,-117.593	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:100:0,100:0:0:100:3581:-322.496,-30.103,0	0/1:63:37,26:37:1302:26:908:-63.0676,0,-98.5149	0/1:143:61,82:61:2175:82:2922:-220.167,0,-152.969	0/1:74:40,34:40:1428:34:1209:-86.8379,0,-106.541	1/1:28:0,28:0:0:28:991:-89.5035,-8.42884,0	0/1:49:32,17:32:1124:17:603:-39.849,0,-86.7147	0/1:107:60,47:60:2116:47:1680:-119.277,0,-158.482	1/1:27:0,27:0:0:27:954:-86.174,-8.12781,0	1/1:84:0,84:0:0:84:3003:-270.501,-25.2865,0	1/1:38:0,38:0:0:38:1345:-121.348,-11.4391,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:36:23,13:23:790:13:455:-30.4449,0,-60.5754	0/1:42:30,12:30:1065:12:432:-26.5779,0,-83.5142	1/1:101:1,100:1:36:100:3575:-318.359,-26.8058,0	1/1:59:0,59:0:0:59:2107:-189.899,-17.7608,0
chr02	620635	.	G	A	17845.6	PASS	AB=0.482374;ABP=9.05767;AC=25;AF=0.132979;AN=188;AO=1089;CIGAR=1X;DP=7435;DPB=7435;DPRA=1.26611;EPP=2367.74;EPPR=13770.1;GTI=1;LEN=1;MEANALT=1.12903;MQM=59.798;MQMR=59.9896;NS=94;NUMALT=1;ODDS=0.591115;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38892;QR=226025;RO=6340;RPL=0;RPP=2367.74;RPPR=13770.1;RPR=1089;RUN=1;SAF=1089;SAP=2367.74;SAR=0;SRF=6340;SRP=13770.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:77:77,0:77:2733:0:0:0,-23.1793,-246.212	0/0:59:59,0:59:2078:0:0:0,-17.7608,-187.287	0/0:62:62,0:62:2217:0:0:0,-18.6639,-199.793	0/1:165:63,102:63:2213:102:3628:-277.042,0,-149.761	0/0:69:69,0:69:2450:0:0:0,-20.7711,-220.752	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/0:105:105,0:105:3756:0:0:0,-31.6081,-338.24	0/0:106:106,0:106:3770:0:0:0,-31.9092,-339.498	0/0:116:116,0:116:4157:0:0:0,-34.9195,-374.306	0/0:54:54,0:54:1909:0:0:0,-16.2556,-172.086	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/0:76:76,0:76:2694:0:0:0,-22.8783,-242.702	0/1:69:31,38:31:1108:38:1364:-102.29,0,-79.2599	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:65:33,32:33:1188:32:1137:-83.0654,0,-87.6616	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/1:141:69,72:69:2476:72:2565:-188.653,0,-180.648	0/1:130:77,53:77:2730:53:1908:-132.85,0,-206.807	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:142:140,1:140:4960:1:36:0,-39.1319,-443.021	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:231:231,0:231:8212:0:0:0,-69.5379,-739.093	0/0:149:148,0:148:5277:0:0:0,-44.5524,-474.707	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:106:106,0:106:3785:0:0:0,-31.9092,-340.848	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511	0/1:94:59,35:59:2112:35:1237:-83.3308,0,-162.052	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:191:191,0:191:6844:0:0:0,-57.4967,-616.029	0/1:91:56,34:56:2001:34:1220:-82.5107,0,-152.909	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:132:132,0:132:4714:0:0:0,-39.736,-424.417	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:127:74,53:74:2629:53:1885:-131.609,0,-198.626	0/1:90:49,41:49:1752:41:1464:-104.963,0,-130.871	0/1:60:36,24:36:1279:24:860:-59.66,0,-97.3506	0/1:90:50,40:50:1777:40:1409:-100.009,0,-133.118	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:144:144,0:144:5119:0:0:0,-43.3483,-460.851	0/0:77:77,0:77:2726:0:0:0,-23.1793,-245.581	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.291	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:80:79,1:79:2806:1:36:0,-20.5797,-249.275	0/1:47:24,22:24:852:22:788:-57.0364,0,-62.7934	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:116:116,0:116:4130:0:0:0,-34.9195,-371.873	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/1:21:12,9:12:424:9:320:-22.8207,0,-32.1748	0/0:16:16,0:16:542:0:0:0,-4.81648,-48.9394	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/1:108:45,63:45:1608:63:2268:-171.866,0,-112.499	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:194:194,0:194:6942:0:0:0,-58.3998,-624.842	0/0:132:129,3:129:4609:3:108:0,-29.6608,-404.898	0/1:54:48,6:48:1720:6:216:-3.53489,0,-138.83	0/0:74:73,1:73:2597:1:36:0,-18.6779,-230.379	0/1:153:86,66:86:3054:66:2360:-166.542,0,-228.971	0/0:127:127,0:127:4541:0:0:0,-38.2308,-408.855	0/1:63:32,31:32:1135:31:1112:-81.4172,0,-83.4932	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.064	0/1:54:27,27:27:972:27:972:-71.5414,0,-71.5423	0/0:34:34,0:34:1182:0:0:0,-10.235,-106.681	0/0:128:128,0:128:4596:0:0:0,-38.5318,-413.803	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/0:155:155,0:155:5530:0:0:0,-46.6596,-497.824	0/0:208:207,0:207:7413:0:0:0,-62.3132,-666.854	0/0:58:58,0:58:2016:0:0:0,-17.4597,-181.706	0/0:96:96,0:96:3425:0:0:0,-28.8989,-308.463	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:133:133,0:133:4704:0:0:0,-40.037,-423.519	0/0:50:50,0:50:1751:0:0:0,-15.0515,-157.868	0/1:143:76,67:76:2713:67:2385:-171.854,0,-201.365	0/1:58:25,33:25:881:33:1184:-89.4086,0,-62.1461	0/0:62:61,1:61:2165:1:36:0,-15.0656,-191.517	0/1:46:22,24:22:792:24:860:-63.8674,0,-57.7583	0/1:138:61,77:61:2180:77:2741:-205.389,0,-154.924	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:83:83,0:83:2949:0:0:0,-24.9855,-265.626	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.94	0/1:106:53,53:53:1892:53:1900:-139.364,0,-138.649	0/1:102:34,68:34:1208:68:2425:-187.797,0,-78.321	0/0:125:125,0:125:4468:0:0:0,-37.6287,-402.291	0/0:123:122,1:122:4331:1:36:0,-33.431,-386.368
chr02	620660	.	C	A	17833.2	PASS	AB=0.476338;ABP=14.006;AC=25;AF=0.132979;AN=188;AO=1086;CIGAR=1X;DP=7508;DPB=7508;DPRA=1.40044;EPP=2352.55;EPPR=13883.1;GTI=1;LEN=1;MEANALT=1.03125;MQM=59.7864;MQMR=59.9796;NS=94;NUMALT=1;ODDS=1.2437;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38931;QR=229460;RO=6420;RPL=1085;RPP=2352.55;RPPR=13883.1;RPR=1;RUN=1;SAF=1086;SAP=2361.23;SAR=0;SRF=6420;SRP=13943.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:78:78,0:78:2778:0:0:0,-23.4803,-250.26	0/0:59:59,0:59:2102:0:0:0,-17.7608,-189.448	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/1:167:65,102:65:2327:102:3652:-278.583,0,-159.417	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:108:108,0:108:3842:0:0:0,-32.5112,-345.977	0/0:106:106,0:106:3765:0:0:0,-31.9092,-339.05	0/0:116:116,0:116:4159:0:0:0,-34.9195,-374.487	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.07	0/0:100:100,0:100:3531:0:0:0,-30.103,-318	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.191	0/1:68:32,36:32:1152:36:1284:-95.3934,0,-83.5201	0/0:73:72,0:72:2551:0:0:0,-21.6742,-229.479	0/1:67:36,31:36:1296:31:1108:-79.8574,0,-96.7749	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:143:71,72:71:2544:72:2580:-189.402,0,-186.163	0/1:132:79,53:79:2823:53:1900:-131.528,0,-214.573	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:143:142,1:142:5081:1:36:0,-39.449,-453.833	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:229:229,0:229:8204:0:0:0,-68.9359,-738.372	0/0:151:150,1:150:5392:1:36:0,-41.8573,-481.81	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/1:94:60,34:60:2148:34:1224:-82.1679,0,-165.291	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:196:196,0:196:7006:0:0:0,-59.0019,-630.603	0/1:91:57,34:57:2025:34:1220:-82.5722,0,-155.127	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:133:133,0:133:4754:0:0:0,-40.037,-428.017	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/1:125:73,52:73:2611:52:1864:-130.324,0,-197.609	0/1:91:50,41:50:1777:41:1476:-105.742,0,-132.817	0/1:59:35,24:35:1252:24:860:-59.9611,0,-95.2243	0/1:90:49,41:49:1755:41:1468:-105.32,0,-131.141	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/0:147:147,0:147:5251:0:0:0,-44.2514,-472.728	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:79:78,1:78:2762:1:36:0,-20.2787,-245.317	0/1:48:26,22:26:924:22:792:-57.1544,0,-69.0282	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:116:116,0:116:4144:0:0:0,-34.9195,-373.122	0/1:29:18,11:18:640:11:396:-27.2529,0,-49.1994	0/1:21:12,9:12:417:9:324:-23.1842,0,-31.5386	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.2583	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:110:46,64:46:1652:64:2289:-173.152,0,-115.855	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:196:195,1:195:6987:1:36:0,-55.4284,-625.263	0/0:132:129,3:129:4636:3:108:0,-29.6608,-407.326	0/1:54:48,6:48:1720:6:216:-3.53489,0,-138.83	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:155:89,66:89:3169:66:2368:-166.718,0,-238.147	0/0:125:125,0:125:4446:0:0:0,-37.6287,-400.31	0/1:64:33,31:33:1176:31:1105:-80.4887,0,-86.8642	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.17	0/1:55:28,27:28:1004:27:972:-71.2403,0,-74.1192	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:127:127,0:127:4530:0:0:0,-38.2308,-407.868	0/0:74:74,0:74:2638:0:0:0,-22.2762,-237.666	0/0:157:157,0:157:5644:0:0:0,-47.2617,-508.077	0/0:210:210,0:210:7500:0:0:0,-63.2163,-675.042	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:96:96,0:96:3443:0:0:0,-28.8989,-310.082	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:135:135,0:135:4827:0:0:0,-40.639,-434.585	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/1:144:78,66:78:2800:66:2364:-169.665,0,-208.891	0/1:58:25,33:25:885:33:1180:-89.0483,0,-62.5068	0/0:61:60,1:60:2132:1:36:0,-14.7646,-188.548	0/1:49:25,24:25:891:24:864:-63.3251,0,-65.7583	0/1:138:61,77:61:2181:77:2768:-207.819,0,-155.012	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/0:80:80,0:80:2858:0:0:0,-24.0824,-257.454	0/0:82:82,0:82:2912:0:0:0,-24.6845,-262.314	0/0:57:57,0:57:2034:0:0:0,-17.1587,-183.33	0/1:107:53,53:53:1887:53:1904:-139.364,0,-137.839	0/1:102:34,68:34:1216:68:2429:-188.157,0,-79.0415	0/0:129:129,0:129:4582:0:0:0,-38.8329,-412.545	0/0:127:126,1:126:4502:1:36:0,-34.6351,-401.752
chr02	628918	.	A	T	53049	PASS	AB=0.499463;ABP=3.02197;AC=32;AF=0.170213;AN=188;AO=2333;CIGAR=1X;DP=12457;DPB=12457;DPRA=1.29687;EPP=4999.81;EPPR=21718.5;GTI=3;LEN=1;MEANALT=1.05263;MQM=59.9378;MQMR=59.9756;NS=94;NUMALT=1;ODDS=1.34635;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83301;QR=361890;RO=10120;RPL=1380;RPP=172.716;RPPR=1157.92;RPR=953;RUN=1;SAF=1388;SAP=185.672;SAR=945;SRF=6248;SRP=1214.35;SRR=3872;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.149	0/0:163:163,0:163:5832:0:0:0,-49.0679,-524.982	0/1:169:79,90:79:2840:90:3216:-238.787,0,-204.964	0/1:257:124,133:124:4425:133:4765:-351.629,0,-321.057	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:143:143,0:143:5128:0:0:0,-43.0473,-461.035	0/0:234:234,0:234:8381:0:0:0,-70.441,-754.293	0/0:161:161,0:161:5738:0:0:0,-48.4658,-516.536	0/0:111:111,0:111:3977:0:0:0,-33.4143,-358.031	0/0:106:106,0:106:3770:0:0:0,-31.9092,-339.5	0/0:211:211,0:211:7552:0:0:0,-63.5173,-679.718	0/0:149:148,0:148:5288:0:0:0,-44.5524,-475.726	0/1:141:74,67:74:2656:67:2362:-170.344,0,-196.84	0/0:139:139,0:139:4979:0:0:0,-41.8432,-448.257	0/1:115:67,48:67:2400:48:1728:-121.187,0,-181.638	0/0:111:111,0:111:3971:0:0:0,-33.4143,-357.58	0/0:105:105,0:105:3728:0:0:0,-31.6081,-335.721	0/0:89:89,0:89:3183:0:0:0,-26.7917,-286.693	0/1:204:95,109:95:3378:109:3884:-288.343,0,-242.824	0/1:193:115,78:115:4128:78:2777:-192.064,0,-313.604	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:164:163,1:163:5816:1:36:0,-45.7706,-519.955	0/1:95:86,9:86:3084:9:324:-0.908006,0,-248.699	0/0:105:105,0:105:3749:0:0:0,-31.6081,-337.609	0/0:290:290,0:290:10373:0:0:0,-87.2987,-933.485	0/0:315:315,0:315:11278:0:0:0,-94.8244,-1014.9	0/0:102:102,0:102:3633:0:0:0,-30.7051,-327.175	0/0:228:227,1:227:8116:1:36:0,-65.0366,-726.856	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.253	0/1:150:71,79:71:2512:79:2795:-206.636,0,-181.176	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:360:359,1:359:12858:1:36:0,-104.773,-1153.43	0/1:105:47,58:47:1688:58:2072:-155.142,0,-120.599	0/1:110:48,61:48:1728:61:2169:-162.301,0,-122.633	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/0:177:177,0:177:6313:0:0:0,-53.2823,-568.261	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.743	0/1:216:103,113:103:3708:113:4052:-299.839,0,-268.897	0/1:146:64,82:64:2291:82:2935:-220.433,0,-162.5	0/1:137:79,58:79:2804:58:2088:-146.949,0,-211.358	0/1:91:35,56:35:1248:56:2003:-153.149,0,-85.2196	0/1:163:77,86:77:2768:86:3059:-226.47,0,-200.293	0/0:193:192,1:192:6833:1:25:0,-55.6157,-612.558	0/0:124:124,0:124:4444:0:0:0,-37.3277,-400.13	0/0:205:205,0:205:7316:0:0:0,-61.7111,-658.486	0/0:107:107,0:107:3829:0:0:0,-32.2102,-344.805	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:158:89,69:89:3180:69:2460:-174.089,0,-238.862	0/1:59:35,24:35:1256:24:843:-58.3895,0,-95.5845	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:156:156,0:156:5574:0:0:0,-46.9607,-501.779	0/1:69:28,41:28:1000:41:1467:-111.554,0,-69.5443	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:138:138,0:138:4922:0:0:0,-41.5421,-443.131	0/1:164:83,81:83:2979:81:2899:-211.776,0,-218.972	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:213:213,0:213:7624:0:0:0,-64.1194,-686.195	0/0:210:209,0:209:7469:0:0:0,-62.9153,-671.891	0/0:108:103,4:103:3704:4:144:0,-19.2564,-320.247	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/1:173:86,87:86:3072:87:3117:-228.677,0,-224.631	0/0:125:124,1:124:4419:1:36:0,-34.0305,-394.282	0/1:71:31,40:31:1112:40:1440:-108.525,0,-79.0182	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.182	0/1:157:75,82:75:2649:82:2921:-215.851,0,-191.392	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:99:99,0:99:3542:0:0:0,-29.802,-318.988	0/0:281:281,0:281:10063:0:0:0,-84.5894,-905.395	0/0:193:193,0:193:6902:0:0:0,-58.0988,-621.242	0/1:186:89,97:89:3195:97:3451:-254.81,0,-231.78	0/0:175:175,0:175:6279:0:0:0,-52.6802,-565.201	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:182:182,0:182:6540:0:0:0,-54.7875,-588.679	0/1:184:107,77:107:3805:77:2740:-191.451,0,-287.248	0/1:246:117,129:117:4212:129:4607:-340.724,0,-305.202	0/1:139:90,49:90:3208:49:1760:-116.841,0,-247.098	0/0:138:138,0:138:4948:0:0:0,-41.5421,-445.469	0/1:161:76,85:76:2728:85:3035:-224.914,0,-197.297	0/1:306:144,162:144:5138:162:5794:-429.458,0,-370.447	0/0:74:74,0:74:2645:0:0:0,-22.2762,-238.295	0/0:158:158,0:158:5664:0:0:0,-47.5627,-509.879	0/0:141:141,0:141:5035:0:0:0,-42.4452,-453.297	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.322	0/1:139:60,79:60:2143:79:2821:-212.286,0,-151.294	0/1:132:44,88:44:1546:88:3152:-244.169,0,-99.6918	0/0:157:157,0:157:5601:0:0:0,-47.2617,-504.053	0/0:226:226,0:226:8009:0:0:0,-68.0328,-720.777
chr02	652602	.	G	A	117651	PASS	AB=0.499773;ABP=3.01128;AC=157;AF=0.844086;AN=186;AO=5455;CIGAR=1X;DP=6577;DPB=6577;DPRA=0;EPP=11848.4;EPPR=2437.23;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.967;MQMR=59.9982;NS=93;NUMALT=1;ODDS=1.40578;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193620;QR=40010;RO=1121;RPL=0;RPP=11848.4;RPPR=2437.23;RPR=5455;RUN=1;SAF=5455;SAP=11848.4;SAR=0;SRF=1121;SRP=2437.23;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1592:-143.568,-13.5464,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:110:0,110:0:0:110:3901:-351.285,-33.1133,0	0/1:150:81,69:81:2904:69:2426:-173.439,0,-216.441	1/1:14:1,13:1:36:13:460:-38.1371,-0.616145,0	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	1/1:90:1,89:1:36:89:3160:-281.029,-23.4944,0	1/1:89:1,88:1:36:88:3129:-278.238,-23.1934,0	1/1:92:0,92:0:0:92:3284:-295.78,-27.6948,0	1/1:79:0,79:0:0:79:2817:-253.768,-23.7814,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:67:0,67:0:0:67:2384:-214.818,-20.169,0	1/1:64:1,63:1:36:63:2240:-198.21,-15.6676,0	0/1:39:21,18:21:748:18:648:-46.9117,0,-55.9051	1/1:46:0,46:0:0:46:1637:-147.617,-13.8474,0	0/1:43:20,23:20:712:23:828:-61.8998,0,-51.4624	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:26:0,26:0:0:26:934:-84.3793,-7.82678,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:151:63,88:63:2237:88:3128:-236.292,0,-156.137	0/1:201:112,89:112:4016:89:3165:-224.567,0,-301.121	1/1:97:0,97:0:0:97:3422:-308.194,-29.1999,0	1/1:104:2,102:2:72:102:3622:-319.349,-24.4704,0	0/1:64:7,57:7:252:57:2024:-163.167,0,-3.76304	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:266:0,266:0:0:266:9392:-845.248,-80.074,0	1/1:189:1,188:1:36:188:6568:-587.615,-53.2964,0	1/1:27:1,26:1:36:26:908:-78.4356,-4.52954,0	1/1:212:0,212:0:0:212:7529:-677.656,-63.8184,0	1/1:98:0,98:0:0:98:3474:-312.84,-29.5009,0	0/1:76:27,49:27:953:49:1760:-135.806,0,-63.205	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	1/1:123:0,123:0:0:123:4363:-392.843,-37.0267,0	0/1:121:51,70:51:1832:70:2500:-188.828,0,-128.736	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:61:0,61:0:0:61:2131:-192.054,-18.3628,0	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	0/1:92:26,66:26:928:66:2364:-185.324,0,-56.1435	0/1:29:20,9:20:705:9:316:-20.049,0,-55.0429	0/1:31:15,16:15:536:16:570:-42.3005,0,-39.2429	1/1:88:0,88:0:0:88:3117:-280.755,-26.4906,0	0/1:95:52,43:52:1845:43:1540:-110.295,0,-137.73	1/1:109:0,109:0:0:109:3865:-348.047,-32.8123,0	1/1:39:0,39:0:0:39:1369:-123.506,-11.7402,0	1/1:79:0,79:0:0:79:2805:-252.689,-23.7814,0	1/1:110:0,110:0:0:110:3870:-348.497,-33.1133,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:85:47,37:47:1669:37:1301:-91.7431,0,-124.849	0/1:44:30,14:30:1076:14:504:-32.4528,0,-83.9075	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:119:0,119:0:0:119:4223:-380.217,-35.8226,0	0/1:40:16,24:16:576:24:852:-64.9592,0,-40.1338	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:84:0,84:0:0:84:2966:-267.172,-25.2865,0	0/1:92:55,37:55:1961:37:1324:-91.7673,0,-149.069	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:93:0,93:0:0:93:3278:-295.24,-27.9958,0	1/1:229:1,228:1:36:228:8114:-726.68,-65.3376,0	1/1:47:3,44:3:108:44:1561:-130.704,-4.07324,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:137:73,64:73:2597:64:2257:-162.151,0,-192.735	1/1:156:5,151:5:180:151:5381:-467.871,-30.4086,0	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	1/1:58:0,58:0:0:58:2007:-180.471,-17.4597,0	0/1:44:21,23:21:756:23:828:-61.5988,0,-55.1219	1/1:25:0,25:0:0:25:885:-79.9665,-7.52575,0	1/1:146:0,146:0:0:146:5165:-464.957,-43.9504,0	1/1:25:0,25:0:0:25:896:-80.957,-7.52575,0	1/1:136:0,136:0:0:136:4840:-435.713,-40.9401,0	1/1:111:0,111:0:0:111:3920:-352.994,-33.4143,0	0/1:36:16,20:16:572:20:720:-54.2917,0,-40.9763	1/1:70:1,69:1:36:69:2453:-217.425,-17.4738,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:107:0,107:0:0:107:3815:-343.549,-32.2102,0	0/1:139:81,58:81:2889:58:2050:-142.819,0,-218.402	0/1:171:88,83:88:3141:83:2960:-215.158,0,-231.438	0/1:44:19,25:19:669:25:900:-68.0757,0,-47.2886	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	0/1:89:45,44:45:1620:44:1584:-116.06,0,-119.298	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:49:0,49:0:0:49:1727:-155.712,-14.7505,0	1/1:53:0,53:0:0:53:1900:-171.222,-15.9546,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:69:43,26:43:1544:26:936:-63.76,0,-118.482	0/1:45:31,14:31:1080:14:500:-31.7898,0,-83.9594	1/1:75:0,75:0:0:75:2653:-239.016,-22.5773,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0
chr02	663170	.	C	T	33645.7	PASS	AB=0.514956;ABP=10.5449;AC=29;AF=0.155914;AN=186;AO=2016;CIGAR=1X;DP=11817;DPB=11817;DPRA=1.3551;EPP=4363.34;EPPR=21192.3;GTI=1;LEN=1;MEANALT=1.04878;MQM=46.312;MQMR=59.4693;NS=93;NUMALT=1;ODDS=2.10733;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72006;QR=347764;RO=9794;RPL=2008;RPP=4311.49;RPPR=20838.3;RPR=8;RUN=1;SAF=2010;SAP=4328.74;SAR=6;SRF=9753;SRP=20915.8;SRR=41;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1238:0:0:0,-10.536,-111.656	0/0:189:189,0:189:6687:0:0:0,-56.8947,-601.347	0/0:87:87,0:87:3105:0:0:0,-26.1896,-279.654	0/1:213:119,94:119:4237:94:3361:-234.296,0,-317.121	0/0:48:47,1:47:1684:1:36:0,-10.8826,-147.852	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.686	0/0:176:175,1:175:6229:1:36:0,-49.4227,-557.05	0/0:260:260,0:260:9183:0:0:0,-78.2678,-826.331	0/0:143:143,0:143:5093:0:0:0,-43.0473,-458.042	0/0:175:175,0:175:6213:0:0:0,-52.6802,-557.703	0/0:111:111,0:111:3942:0:0:0,-33.4143,-354.397	0/0:111:111,0:111:3907:0:0:0,-33.4143,-351.756	0/0:113:113,0:113:3965:0:0:0,-34.0164,-356.941	0/1:157:83,74:83:2967:74:2625:-186.512,0,-219.976	0/0:97:97,0:97:3435:0:0:0,-29.1999,-309.313	0/1:87:42,45:42:1504:45:1612:-117.822,0,-109.437	0/0:149:149,0:149:5277:0:0:0,-44.8535,-474.63	0/0:136:136,0:136:4832:0:0:0,-40.9401,-434.944	0/0:74:74,0:74:2625:0:0:0,-22.2762,-236.497	0/1:213:99,114:99:3492:114:4092:-299.547,0,-250.246	0/1:191:101,90:101:3585:90:3208:-228.997,0,-265.304	0/0:124:124,0:124:4407:0:0:0,-37.3277,-396.567	0/0:78:77,1:77:2702:1:36:0,-19.9217,-239.582	0/0:79:77,2:77:2743:2:72:0,-17.0044,-240.276	0/0:69:67,0:67:2404:0:0:0,-20.169,-216.146	0/0:413:411,1:411:14572:1:36:0,-120.831,-1307.27	0/0:327:327,0:327:11632:0:0:0,-98.4368,-1046.13	0/0:67:67,0:67:2357:0:0:0,-20.169,-212.352	0/0:252:251,1:251:8958:1:36:0,-72.311,-802.51	0/0:113:112,0:112:3978:0:0:0,-33.7154,-357.784	0/1:95:40,55:40:1436:55:1953:-145.647,0,-100.832	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5292	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2906	0/1:7:2,5:2:68:5:180:-14.3306,0,-4.3505	0/0:285:285,0:285:10055:0:0:0,-85.7935,-904.223	0/1:300:123,177:123:4345:177:6327:-472.613,0,-300.894	0/1:101:48,53:48:1709:53:1908:-138.8,0,-123.673	.:.:.:.:.:.:.:.	0/0:152:148,4:148:5257:4:144:0,-32.5594,-459.992	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.811	0/1:170:72,98:72:2554:98:3486:-258.231,0,-178.906	0/1:121:67,54:67:2404:54:1933:-135.818,0,-179.559	0/1:92:45,47:45:1594:47:1680:-121.565,0,-116.054	0/0:131:131,0:131:4664:0:0:0,-39.4349,-418.677	0/1:116:55,61:55:1953:61:2178:-159.604,0,-141.057	0/0:236:233,3:233:8277:3:108:0,-61.0789,-734.072	0/0:150:150,0:150:5338:0:0:0,-45.1545,-480.46	0/0:187:187,0:187:6663:0:0:0,-56.2926,-599.53	0/0:199:199,0:199:7084:0:0:0,-59.905,-637.21	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.559	0/1:183:77,105:77:2729:105:3772:-279.744,0,-190.64	0/1:61:30,31:30:1076:31:1116:-79.2076,0,-78.7451	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:134:134,0:134:4779:0:0:0,-40.338,-430.12	0/1:8:1,7:1:36:7:252:-20.3669,0,-1.19003	0/1:4:2,2:2:72:2:72:-5.53806,0,-5.6326	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2262	0/0:158:158,0:158:5602:0:0:0,-47.5627,-504.22	0/1:168:87,81:87:3088:81:2894:-206.883,0,-227.538	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:237:236,1:236:8406:1:36:0,-67.7956,-752.511	0/0:200:200,0:200:7139:0:0:0,-60.206,-642.442	0/0:152:150,2:150:5333:2:72:0,-38.9562,-473.168	0/0:102:102,0:102:3626:0:0:0,-30.7051,-326.334	0/1:217:89,128:89:3163:128:4585:-342.645,0,-219.457	0/0:114:114,0:114:4033:0:0:0,-34.3174,-363.132	0/1:69:44,25:44:1568:25:896:-59.1053,0,-120.572	0/0:91:90,0:90:3199:0:0:0,-27.0927,-287.732	0/1:145:73,72:73:2594:72:2563:-183.682,0,-189.686	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.005	0/0:100:100,0:100:3515:0:0:0,-30.103,-316.148	0/0:116:116,0:116:4109:0:0:0,-34.9195,-369.495	0/0:291:290,1:290:10270:1:36:0,-84.0329,-920.152	0/0:189:188,0:188:6720:0:0:0,-56.5936,-603.933	0/1:118:68,50:68:2401:50:1785:-123.222,0,-180.773	0/0:186:186,0:186:6581:0:0:0,-55.9916,-592.298	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/0:112:111,1:111:3955:1:36:0,-30.1485,-352.503	0/1:82:41,41:41:1461:41:1464:-106.123,0,-107.077	0/1:252:130,122:130:4636:122:4334:-309.937,0,-341.348	0/1:120:55,65:55:1953:65:2291:-166.692,0,-139.898	0/0:117:117,0:117:4160:0:0:0,-35.2205,-374.393	0/1:125:71,54:71:2510:54:1940:-134.883,0,-188.45	0/1:200:104,96:104:3700:96:3444:-244.222,0,-272.965	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.184	0/0:125:125,0:125:4415:0:0:0,-37.6287,-397.41	0/0:91:91,0:91:3223:0:0:0,-27.3937,-290.234	0/0:85:85,0:85:3043:0:0:0,-25.5875,-273.915	0/1:165:82,83:82:2922:83:2931:-211.708,0,-213.488	0/1:98:30,68:30:1076:68:2440:-187.105,0,-67.5721	0/0:131:131,0:131:4643:0:0:0,-39.4349,-417.884	0/0:167:167,0:167:5860:0:0:0,-50.272,-527.33
chr02	664978	.	C	T	15895.8	PASS	AB=0.304917;ABP=1340.79;AC=28;AF=0.148936;AN=188;AO=1248;CIGAR=1X;DP=9312;DPB=9312;DPRA=1.64092;EPP=2713.01;EPPR=17487.7;GTI=0;LEN=1;MEANALT=1.05263;MQM=59.9046;MQMR=59.9335;NS=94;NUMALT=1;ODDS=5.03969;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44590;QR=287192;RO=8060;RPL=0;RPP=2713.01;RPPR=17487.7;RPR=1248;RUN=1;SAF=0;SAP=2713.01;SAR=1248;SRF=0;SRP=17505.1;SRR=8060;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:60,18:60:2148:18:634:-33.9062,0,-170.079	0/1:71:47,24:47:1669:24:860:-56.3487,0,-129.122	0/1:155:95,60:95:3370:60:2140:-146.208,0,-256.855	0/0:226:226,0:226:8062:0:0:0,-68.0328,-725.599	0/0:36:35,1:35:1252:1:36:0,-7.2388,-109.387	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:95:95,0:95:3366:0:0:0,-28.5978,-303.153	0/1:118:81,37:81:2881:37:1328:-84.3007,0,-224.004	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:59:59,0:59:2082:0:0:0,-17.7608,-186.626	0/1:140:105,35:105:3706:35:1256:-71.2011,0,-291.599	0/1:133:94,39:94:3356:39:1400:-86.2622,0,-262.22	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:66:65,1:65:2308:1:36:0,-16.2697,-204.383	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.94	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:143:143,0:143:5074:0:0:0,-43.0473,-456.803	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.197	0/1:149:91,57:91:3272:57:2035:-138.509,0,-249.787	0/0:104:104,0:104:3717:0:0:0,-31.3071,-334.73	0/0:32:32,0:32:1113:0:0:0,-9.63296,-100.447	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.11	0/1:250:185,65:185:6620:65:2336:-135.24,0,-520.613	0/0:170:170,0:170:6075:0:0:0,-51.1751,-546.853	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/1:385:266,119:266:9456:119:4256:-267.323,0,-735.096	0/0:74:73,1:73:2607:1:36:0,-18.6779,-231.28	0/0:101:101,0:101:3596:0:0:0,-30.404,-323.599	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:91:91,0:91:3257:0:0:0,-27.3937,-293.349	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/0:78:74,4:74:2651:4:144:0,-10.1667,-225.522	0/0:200:200,0:200:7081:0:0:0,-60.206,-637.354	0/0:91:91,0:91:3244:0:0:0,-27.3937,-292.18	0/1:102:83,19:83:2948:19:680:-30.8241,0,-234.85	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/1:293:209,83:209:7419:83:2949:-177.382,0,-579.496	0/1:56:41,15:41:1464:15:536:-31.7171,0,-115.198	0/0:112:111,0:111:3977:0:0:0,-33.4143,-357.758	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.225	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/1:123:97,26:97:3480:26:936:-47.5328,0,-276.192	0/0:80:80,0:80:2845:0:0:0,-24.0824,-256.283	0/0:204:203,1:203:7252:1:36:0,-57.8118,-649.099	0/0:80:80,0:80:2843:0:0:0,-24.0824,-256.106	0/1:177:115,62:115:4101:62:2211:-145.971,0,-315.993	0/0:114:114,0:114:4056:0:0:0,-34.3174,-365.199	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.228	0/1:317:211,106:211:7559:106:3788:-245.685,0,-584.922	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.454	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/1:239:172,67:172:6139:67:2396:-143.951,0,-480.392	0/1:56:35,21:35:1256:21:748:-50.6803,0,-96.4876	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:174:124,50:124:4355:50:1786:-108.644,0,-339.746	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:164:164,0:164:5855:0:0:0,-49.3689,-527.026	0/0:103:102,1:102:3638:1:36:0,-27.4078,-323.94	0/0:54:52,2:52:1841:2:72:0,-9.4189,-159.132	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/0:100:100,0:100:3549:0:0:0,-30.103,-319.336	0/1:161:98,63:98:3512:63:2212:-150.685,0,-267.824	0/0:41:41,0:41:1441:0:0:0,-12.3422,-129.984	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/1:54:40,14:40:1423:14:504:-29.4425,0,-112.111	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:119:119,0:119:4214:0:0:0,-35.8226,-379.442	0/0:117:117,0:117:4188:0:0:0,-35.2205,-377.1	0/0:157:157,0:157:5587:0:0:0,-47.2617,-502.947	0/0:176:176,0:176:6272:0:0:0,-52.9813,-564.575	0/1:34:22,12:22:788:12:432:-28.9815,0,-61.0098	0/1:70:42,28:42:1512:28:1008:-69.9643,0,-115.289	0/0:40:39,1:39:1392:1:36:0,-8.44292,-121.981	0/0:125:124,1:124:4437:1:32:0,-34.4294,-396.11	0/0:79:78,1:78:2788:1:36:0,-20.1831,-247.551	0/0:144:144,0:144:5112:0:0:0,-43.3483,-460.209	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:116:72,44:72:2561:44:1563:-106.042,0,-195.82	0/1:53:44,9:44:1568:9:324:-13.5513,0,-125.457	0/1:205:150,55:150:5343:55:1972:-115.999,0,-419.295	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:72:72,0:72:2526:0:0:0,-21.6742,-227.593	0/0:68:68,0:68:2392:0:0:0,-20.47,-215.534	0/1:59:46,13:46:1648:13:468:-24.6989,0,-130.848	0/1:131:94,37:94:3341:37:1324:-79.5363,0,-261.467	0/1:148:92,56:92:3284:56:2008:-136.441,0,-251.228	0/0:171:170,0:170:6067:0:0:0,-51.1751,-545.729	0/0:94:94,0:94:3353:0:0:0,-28.2968,-301.986
chr02	665006	.	C	T	30877.4	PASS	AB=0.330975;ABP=1265.61;AC=58;AF=0.308511;AN=188;AO=2196;CIGAR=1X;DP=9421;DPB=9421;DPRA=2.60347;EPP=4762.88;EPPR=15603;GTI=9;LEN=1;MEANALT=1.03371;MQM=59.918;MQMR=59.9195;NS=94;NUMALT=1;ODDS=1.19657;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78645;QR=257621;RO=7220;RPL=2195;RPP=4762.88;RPPR=15603;RPR=1;RUN=1;SAF=0;SAP=4771.56;SAR=2196;SRF=0;SRP=15681;SRR=7220;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:53,25:53:1904:25:874:-55.4932,0,-148.129	0/1:72:45,27:45:1616:27:972:-66.1237,0,-124.042	0/1:157:80,77:80:2853:77:2757:-201.108,0,-209.739	0/0:240:225,13:225:7998:13:468:0,-29.541,-677.384	0/0:36:33,3:33:1175:3:108:0,-0.76191,-95.9818	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:100:99,1:99:3503:1:36:0,-26.5047,-311.879	0/1:120:76,44:76:2713:44:1576:-106.008,0,-208.289	0/0:35:33,1:33:1180:1:36:0,-6.99657,-102.91	0/0:52:49,3:49:1756:3:108:0,-5.57839,-148.249	0/1:58:40,18:40:1424:18:648:-41.1921,0,-109.976	0/1:140:103,37:103:3677:37:1331:-77.9482,0,-288.988	0/1:135:90,45:90:3219:45:1620:-105.451,0,-249.293	0/0:57:52,5:52:1868:5:180:0,-0.606645,-151.847	0/1:95:81,14:81:2916:14:504:-17.1002,0,-233.947	0/0:68:62,6:62:2220:6:216:0,-0.679527,-180.274	0/0:43:39,4:39:1400:4:140:0,-0.0297638,-113.385	0/0:30:29,1:29:1025:1:36:0,-5.43262,-88.9624	0/1:38:33,5:33:1184:5:180:-5.11293,0,-95.4292	0/0:143:142,1:142:5085:1:36:0,-39.449,-454.193	0/1:114:98,16:98:3493:16:576:-17.8576,0,-279.883	0/1:149:86,63:86:3073:63:2249:-157.819,0,-231.944	0/0:104:101,3:101:3611:3:108:0,-21.2319,-315.12	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.241	0/0:36:33,3:33:1169:3:108:0,-0.76191,-95.4401	0/1:253:183,70:183:6556:70:2516:-150.529,0,-513.958	0/0:175:174,1:174:6231:1:36:0,-49.082,-557.286	0/1:51:46,5:46:1656:5:180:-1.19954,0,-133.976	0/1:387:261,126:261:9314:126:4513:-289.837,0,-721.34	0/0:74:71,3:71:2552:3:108:0,-12.201,-219.855	0/0:103:96,7:96:3410:7:244:0,-8.70738,-284.596	0/1:28:6,22:6:216:22:792:-63.1768,0,-11.3617	0/1:45:11,34:11:381:34:1220:-96.5605,0,-21.0743	1/1:94:0,94:0:0:94:3357:-302.31,-28.2968,0	1/1:90:5,85:5:176:85:3045:-258.093,-10.9077,0	1/1:83:2,81:2:72:81:2904:-254.758,-18.1488,0	0/0:202:200,2:200:7146:2:72:0,-53.9713,-636.359	0/0:91:89,2:89:3185:2:72:0,-20.557,-280.035	0/1:106:66,40:66:2367:40:1432:-97.2684,0,-181.378	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:292:200,92:200:7119:92:3298:-209.137,0,-552.867	0/1:58:40,18:40:1432:18:648:-41.1921,0,-111.706	0/0:113:106,7:106:3789:7:248:0,-11.3522,-318.543	0/0:60:57,3:57:2036:3:108:0,-7.98663,-173.437	0/0:64:62,2:62:2213:2:72:0,-12.4292,-192.596	0/1:126:99,27:99:3529:27:960:-48.7832,0,-279.693	0/0:80:74,6:74:2660:6:216:0,-4.3027,-219.866	0/0:209:202,7:202:7170:7:252:0,-39.8863,-622.295	0/0:82:81,0:81:2866:0:0:0,-24.3834,-257.816	0/1:177:112,65:112:3990:65:2321:-155.866,0,-306.006	0/0:113:111,2:111:3965:2:72:0,-27.1797,-350.175	1/1:35:0,35:0:0:35:1256:-113.344,-10.5361,0	0/1:323:209,114:209:7443:114:4070:-269.206,0,-572.668	0/0:48:45,3:45:1616:3:108:0,-4.37427,-135.655	0/1:28:4,24:4:144:24:864:-69.6537,0,-4.88478	0/1:235:149,86:149:5348:86:3088:-207.405,0,-410.709	0/1:60:38,22:38:1364:22:781:-52.5265,0,-104.999	1/1:30:2,28:2:72:28:1000:-83.4787,-2.19418,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/0:55:53,2:53:1885:2:72:0,-9.71993,-163.09	0/1:174:106,68:106:3768:68:2448:-168.195,0,-286.94	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/0:163:162,1:162:5812:1:36:0,-45.4696,-519.559	0/0:104:99,5:99:3526:5:180:0,-14.7551,-300.909	0/0:55:53,2:53:1870:2:72:0,-9.71993,-161.739	0/1:93:77,16:77:2753:16:576:-24.1788,0,-220.014	0/0:105:102,3:102:3611:3:108:0,-21.533,-314.838	0/1:161:95,66:95:3401:66:2356:-163.46,0,-257.837	0/1:43:32,11:32:1148:11:386:-22.1308,0,-90.6855	0/0:43:41,2:41:1461:2:72:0,-6.10757,-124.947	0/1:58:39,18:39:1377:18:644:-40.7722,0,-106.708	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	0/0:125:119,6:119:4214:6:208:0,-18.5697,-360.382	0/0:119:111,8:111:3949:8:288:0,-9.55516,-329.334	0/1:160:141,19:141:5030:19:684:-13.7255,0,-404.673	0/0:178:167,11:167:5946:11:381:0,-18.9627,-500.627	0/1:32:19,13:19:665:13:468:-32.8267,0,-50.5398	0/1:68:38,30:38:1364:30:1080:-77.0432,0,-102.577	0/1:41:5,36:5:180:36:1281:-103.213,0,-4.20983	0/1:124:108,16:108:3864:16:576:-14.8473,0,-310.438	0/1:77:64,13:64:2291:13:468:-19.2803,0,-183.243	0/0:144:136,8:136:4816:8:280:0,-17.8096,-408.044	0/0:52:52,0:52:1841:0:0:0,-15.6536,-165.968	0/1:117:65,52:65:2332:52:1868:-133.179,0,-174.919	0/1:54:43,11:43:1529:11:396:-19.7271,0,-121.645	0/1:208:146,62:146:5183:62:2218:-137.225,0,-403.995	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:69:65,4:65:2331:4:144:0,-7.45745,-196.735	0/0:66:63,3:63:2253:3:108:0,-9.79281,-192.956	0/1:59:34,25:34:1224:25:900:-63.5602,0,-92.7063	0/1:129:89,40:89:3184:40:1440:-90.5741,0,-247.937	0/1:147:89,58:89:3165:58:2075:-142.768,0,-240.823	0/0:171:165,6:165:5902:6:216:0,-31.6856,-510.933	0/0:96:90,6:90:3206:6:212:0,-9.47408,-269.335
chr02	882745	.	A	C	44779.8	PASS	AB=0.509045;ABP=6.66349;AC=28;AF=0.148936;AN=188;AO=2656;CIGAR=1X;DP=15297;DPB=15297;DPRA=1.30899;EPP=5744.41;EPPR=27108.3;GTI=2;LEN=1;MEANALT=1.02703;MQM=59.907;MQMR=59.9683;NS=94;NUMALT=1;ODDS=1.39234;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94978;QR=452733;RO=12630;RPL=2653;RPP=5744.41;RPPR=27108.3;RPR=3;RUN=1;SAF=0;SAP=5770.44;SAR=2656;SRF=0;SRP=27428.7;SRR=12630;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:256:255,1:255:9160:1:36:0,-73.4654,-820.769	0/0:228:228,0:228:8173:0:0:0,-68.6348,-735.58	0/1:368:198,170:198:7116:170:6108:-439.039,0,-529.586	0/0:112:112,0:112:4013:0:0:0,-33.7154,-361.352	0/0:85:83,2:83:2969:2:72:0,-18.7508,-260.604	0/0:162:160,0:160:5744:0:0:0,-48.1648,-516.697	0/0:321:320,0:320:11472:0:0:0,-96.3296,-1032.12	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/0:191:190,0:190:6820:0:0:0,-57.1957,-613.509	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:85:44,41:44:1576:41:1472:-107.189,0,-116.487	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842	0/1:74:32,42:32:1148:42:1508:-113.738,0,-81.3536	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.26	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:426:201,225:201:7213:225:8040:-595.375,0,-520.981	0/1:260:140,120:140:5019:120:4316:-310.338,0,-373.587	0/0:247:246,0:246:8809:0:0:0,-74.0534,-792.435	0/0:181:180,1:180:6449:1:36:0,-50.8882,-576.895	0/0:255:239,16:239:8592:16:576:0,-24.5923,-721.101	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:504:504,0:504:18062:0:0:0,-151.719,-1625.16	0/0:318:317,0:317:11368:0:0:0,-95.4265,-1022.47	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:521:520,0:520:18650:0:0:0,-156.536,-1677.7	0/0:207:207,0:207:7406:0:0:0,-62.3132,-666.578	0/1:216:123,93:123:4405:93:3331:-234.984,0,-331.596	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:261:261,0:261:9376:0:0:0,-78.5688,-843.799	0/1:484:256,228:256:9173:228:8150:-587.728,0,-679.341	0/1:54:27,27:27:964:27:964:-70.8212,0,-70.8212	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:225:225,0:225:8034:0:0:0,-67.7317,-723.079	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:242:96,146:96:3436:146:5217:-396.818,0,-236.604	0/1:93:41,52:41:1472:52:1864:-140.044,0,-104.78	0/1:93:54,39:54:1936:39:1400:-98.3034,0,-146.521	0/0:178:178,0:178:6360:0:0:0,-53.5833,-572.489	0/1:249:132,117:132:4744:117:4188:-302.145,0,-352.152	0/0:384:384,0:384:13773:0:0:0,-115.596,-1239.31	0/0:191:191,0:191:6846:0:0:0,-57.4967,-616.207	0/0:242:242,0:242:8683:0:0:0,-72.8493,-781.459	0/0:307:307,0:307:10989:0:0:0,-92.4162,-988.893	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:280:136,144:136:4880:144:5152:-379.522,0,-355.063	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.371	0/0:238:237,1:237:8463:1:36:0,-68.0469,-758.051	0/1:78:34,44:34:1224:44:1569:-118.019,0,-86.9867	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.871	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.56	0/1:156:79,77:79:2832:77:2749:-200.69,0,-208.158	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:409:407,1:407:14587:1:36:0,-119.507,-1308.91	0/0:426:426,0:426:15263:0:0:0,-128.239,-1373.38	0/0:161:148,13:148:5292:13:457:0,-7.00357,-434.953	0/0:180:179,0:179:6417:0:0:0,-53.8844,-577.292	0/1:329:153,176:153:5472:176:6268:-464.224,0,-393.567	0/0:136:133,3:133:4772:3:108:0,-30.8649,-419.561	0/1:25:15,10:15:540:10:356:-24.8555,0,-41.4108	0/0:165:164,1:164:5869:1:36:0,-46.0717,-524.721	0/1:131:63,68:63:2264:68:2429:-179.429,0,-164.587	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/0:230:230,0:230:8212:0:0:0,-69.2369,-738.976	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.357	0/0:276:275,0:275:9872:0:0:0,-82.7832,-888.053	0/0:257:257,0:257:9217:0:0:0,-77.3647,-829.496	0/1:233:113,120:113:4060:120:4254:-312.89,0,-295.446	0/0:166:166,0:166:5949:0:0:0,-49.971,-535.515	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:215:214,0:214:7672:0:0:0,-64.4204,-690.146	0/1:227:100,127:100:3600:127:4529:-339.432,0,-255.867	0/1:426:209,217:209:7454:217:7734:-567.722,0,-542.661	0/1:106:49,57:49:1756:57:2052:-153.025,0,-126.415	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/1:141:73,68:73:2624:68:2423:-175.872,0,-193.959	0/1:176:80,96:80:2880:96:3452:-257.91,0,-206.441	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.354	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.876	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:77:35,42:35:1260:42:1504:-112.47,0,-90.5216	0/1:90:31,59:31:1112:59:2124:-164.336,0,-73.2986	0/0:154:154,0:154:5519:0:0:0,-46.3586,-496.834	0/0:125:125,0:125:4492:0:0:0,-37.6287,-404.447
chr02	882751	.	T	C	276590	PASS	AB=0.483759;ABP=14.9302;AC=160;AF=0.851064;AN=188;AO=12673;CIGAR=1X;DP=15411;DPB=15411;DPRA=0;EPP=27417.9;EPPR=5892.07;GTI=2;LEN=1;MEANALT=1.1383;MQM=59.9631;MQMR=59.8833;NS=94;NUMALT=1;ODDS=1.52911;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=452650;QR=97455;RO=2724;RPL=12661;RPP=27417.9;RPPR=5892.07;RPR=12;RUN=1;SAF=0;SAP=27522.1;SAR=12673;SRF=0;SRP=5918.1;SRR=2724;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41:0:0:41:1461:-131.784,-12.3422,0	1/1:257:1,256:1:36:256:9155:-820.315,-73.7664,0	1/1:232:0,232:0:0:232:8282:-745.389,-69.839,0	0/1:377:177,199:177:6325:199:7129:-528.137,0,-455.926	1/1:112:0,112:0:0:112:4000:-360.182,-33.7154,0	1/1:88:2,85:2:72:85:3056:-268.423,-19.7127,0	1/1:163:1,162:1:36:162:5790:-517.479,-45.4696,0	1/1:323:0,322:0:0:322:11489:-1033.51,-96.9317,0	1/1:105:0,105:0:0:105:3717:-334.731,-31.6082,0	1/1:195:0,194:0:0:194:6896:-620.347,-58.3998,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:82:0,82:0:0:82:2939:-264.744,-24.6845,0	1/1:79:0,79:0:0:79:2810:-253.139,-23.7814,0	0/1:84:41,43:41:1476:43:1527:-112.417,0,-107.85	1/1:102:0,102:0:0:102:3636:-327.444,-30.7051,0	0/1:74:42,32:42:1512:32:1148:-81.3536,0,-114.098	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	1/1:85:0,85:0:0:85:3056:-275.26,-25.5876,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:426:225,201:225:8009:201:7220:-521.612,0,-592.584	0/1:262:124,138:124:4452:138:4935:-365.43,0,-321.971	1/1:250:0,250:0:0:250:8953:-805.749,-75.2575,0	1/1:184:1,183:1:36:183:6514:-582.747,-51.7912,0	1/1:257:18,239:18:644:239:8505:-707.166,-19.0787,0	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:506:0,506:0:0:506:18053:-1624.36,-152.321,0	1/1:313:0,313:0:0:313:11148:-1003.18,-94.2224,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:529:0,529:0:0:529:18887:-1699.38,-159.245,0	1/1:209:0,209:0:0:209:7466:-671.977,-62.9153,0	0/1:216:93,123:93:3302:123:4393:-330.519,0,-232.375	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:16:0,15:0:0:15:536:-48.2152,-4.51545,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:262:0,262:0:0:262:9393:-845.329,-78.8699,0	0/1:490:230,258:230:8241:258:9174:-678.089,0,-594.35	0/1:53:27,26:27:972:26:932:-68.2443,0,-71.8433	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:227:0,227:0:0:227:8111:-730.002,-68.3338,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:244:150,94:150:5373:94:3363:-229.434,0,-410.248	0/1:93:53,40:53:1899:40:1432:-101.182,0,-143.191	0/1:95:40,55:40:1432:55:1976:-149.517,0,-100.58	1/1:176:0,176:0:0:176:6252:-562.773,-52.9813,0	0/1:248:117,131:117:4189:131:4688:-347.417,0,-302.534	1/1:384:0,384:0:0:384:13667:-1229.73,-115.596,0	1/1:193:0,193:0:0:193:6906:-621.604,-58.0988,0	1/1:242:0,242:0:0:242:8666:-779.928,-72.8493,0	1/1:309:0,308:0:0:308:10990:-988.624,-92.7172,0	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	0/1:283:147,136:147:5280:136:4876:-353.8,0,-390.134	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:241:1,240:1:36:240:8586:-769.09,-68.95,0	0/1:79:44,35:44:1565:35:1252:-89.2037,0,-117.358	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:125:0,125:0:0:125:4496:-404.802,-37.6288,0	0/1:160:80,80:80:2876:80:2857:-209.201,0,-210.903	1/1:18:0,17:0:0:17:608:-54.6923,-5.11751,0	1/1:413:1,410:1:36:410:14652:-1314.86,-120.46,0	1/1:425:0,425:0:0:425:15176:-1365.55,-127.938,0	1/1:156:12,144:12:432:144:5133:-422.888,-7.73948,0	1/1:181:1,180:1:36:180:6437:-575.818,-50.8882,0	0/1:333:181,152:181:6450:152:5422:-387.863,0,-479.302	1/1:137:3,134:3:108:134:4805:-422.528,-31.1659,0	0/1:27:11,16:11:396:16:576:-44.0472,0,-27.8549	1/1:166:1,165:1:36:165:5915:-528.859,-46.3727,0	0/1:131:68,63:68:2440:63:2256:-163.868,0,-180.42	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:235:0,235:0:0:235:8406:-756.426,-70.7421,0	1/1:78:0,78:0:0:78:2789:-251.245,-23.4803,0	1/1:280:0,279:0:0:279:9923:-892.645,-83.9874,0	1/1:259:0,259:0:0:259:9224:-830.126,-77.9668,0	0/1:234:121,113:121:4329:113:4039:-293.256,0,-319.324	1/1:167:0,167:0:0:167:5931:-533.897,-50.272,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:216:0,216:0:0:216:7702:-693.211,-65.0225,0	0/1:234:133,101:133:4742:101:3624:-255.92,0,-356.479	0/1:434:228,206:228:8142:206:7387:-534.141,0,-601.125	0/1:107:58,49:58:2084:49:1760:-126.344,0,-155.613	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	0/1:147:72,74:72:2580:74:2644:-193.894,0,-188.094	0/1:179:100,79:100:3584:79:2817:-199.87,0,-268.776	1/1:57:0,57:0:0:57:2025:-182.521,-17.1587,0	1/1:81:0,81:0:0:81:2896:-260.873,-24.3834,0	1/1:76:0,76:0:0:76:2717:-244.768,-22.8783,0	1/1:38:0,38:0:0:38:1341:-120.988,-11.4391,0	0/1:80:46,34:46:1633:34:1216:-85.6596,0,-123.169	0/1:91:62,29:62:2232:29:1027:-65.3484,0,-173.75	1/1:154:0,153:0:0:153:5468:-491.886,-46.0576,0	1/1:127:0,127:0:0:127:4506:-405.707,-38.2308,0
chr02	910076	.	A	G	167625	PASS	AB=0.474335;ABP=18.2806;AC=158;AF=0.849462;AN=186;AO=7623;CIGAR=1X;DP=9046;DPB=9046;DPRA=0;EPP=16556.1;EPPR=3086.5;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.969;MQMR=60;NS=93;NUMALT=1;ODDS=4.74079;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272533;QR=50942;RO=1420;RPL=0;RPP=16556.1;RPPR=3086.5;RPR=7623;RUN=1;SAF=7623;SAP=16556.1;SAR=0;SRF=1420;SRP=3086.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:99:0,99:0:0:99:3545:-319.249,-29.802,0	1/1:141:0,141:0:0:141:5045:-454.194,-42.4452,0	0/1:292:168,124:168:6036:124:4452:-312.948,0,-455.44	1/1:32:1,31:1:36:31:1104:-96.0724,-6.03469,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:113:0,113:0:0:113:4021:-362.079,-34.0164,0	1/1:107:0,107:0:0:107:3790:-341.282,-32.2102,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	1/1:70:0,70:0:0:70:2492:-224.534,-21.0721,0	1/1:102:0,102:0:0:102:3644:-328.165,-30.7051,0	1/1:83:0,83:0:0:83:2966:-267.174,-24.9855,0	0/1:78:48,29:48:1720:29:1028:-69.2941,0,-131.546	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:64:30,34:30:1072:34:1216:-90.4806,0,-77.5265	1/1:49:1,48:1:36:48:1720:-151.487,-11.1522,0	1/1:37:0,37:0:0:37:1323:-119.371,-11.1381,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:193:107,85:107:3840:85:3046:-216.36,0,-287.786	0/1:200:90,110:90:3232:110:3941:-294.67,0,-230.895	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:173:2,171:2:68:171:6129:-545.251,-45.6205,0	1/1:88:5,83:5:180:83:2979:-251.79,-9.93858,0	1/1:59:0,59:0:0:59:2078:-187.287,-17.7608,0	1/1:238:0,238:0:0:238:8501:-765.074,-71.6451,0	1/1:222:0,222:0:0:222:7957:-716.15,-66.8287,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:285:0,285:0:0:285:10232:-920.795,-85.7936,0	1/1:128:0,128:0:0:128:4562:-410.744,-38.5318,0	0/1:101:54,47:54:1944:47:1688:-121.797,0,-144.832	1/1:17:0,17:0:0:17:604:-54.6893,-5.11751,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:10:0,10:0:0:10:360:-32.7265,-3.0103,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:189:0,189:0:0:189:6746:-607.214,-56.8947,0	0/1:79:45,34:45:1616:34:1208:-85.2425,0,-121.949	0/1:47:23,24:23:824:24:860:-63.5734,0,-60.3349	.:.:.:.:.:.:.:.	1/1:126:0,126:0:0:126:4496:-404.81,-37.9298,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:82:43,39:43:1540:39:1385:-100.262,0,-114.209	0/1:72:44,28:44:1580:28:1008:-69.3622,0,-120.817	0/1:58:33,25:33:1180:25:896:-63.5006,0,-89.0483	1/1:100:1,99:1:36:99:3544:-315.571,-26.5047,0	0/1:82:30,52:30:1080:52:1837:-140.924,0,-72.8288	1/1:148:0,148:0:0:148:5285:-475.786,-44.5524,0	1/1:107:0,107:0:0:107:3836:-345.436,-32.2102,0	1/1:132:0,132:0:0:132:4744:-427.116,-39.736,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:81:37,44:37:1313:44:1568:-117.028,0,-94.0863	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:141:0,141:0:0:141:5020:-451.945,-42.4452,0	0/1:40:26,14:26:936:14:496:-32.9331,0,-72.5183	0/1:13:5,8:5:180:8:281:-21.7165,0,-12.6387	1/1:22:0,22:0:0:22:777:-70.2512,-6.62266,0	1/1:77:0,77:0:0:77:2730:-245.94,-23.1793,0	0/1:88:34,54:34:1224:54:1932:-147.666,0,-83.9764	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:291:0,291:0:0:291:10347:-931.158,-87.5997,0	1/1:147:0,147:0:0:147:5268:-474.21,-44.2514,0	1/1:79:2,77:2:72:77:2753:-241.174,-16.9446,0	1/1:54:0,54:0:0:54:1926:-173.617,-16.2556,0	0/1:191:102,89:102:3656:89:3196:-230.366,0,-271.747	1/1:235:0,235:0:0:235:8428:-758.521,-70.7421,0	0/1:50:23,27:23:820:27:972:-72.7464,0,-59.071	1/1:78:0,78:0:0:78:2777:-250.17,-23.4803,0	0/1:47:24,23:24:864:23:828:-60.6957,0,-63.9342	1/1:28:0,28:0:0:28:1004:-90.6652,-8.42884,0	1/1:113:0,113:0:0:113:4011:-360.404,-34.0164,0	1/1:149:0,149:0:0:149:5344:-481.092,-44.8535,0	1/1:172:0,172:0:0:172:6138:-552.517,-51.7772,0	1/1:253:2,251:2:72:251:9005:-803.587,-69.3239,0	0/1:41:24,17:24:864:17:603:-42.2573,0,-65.7403	1/1:194:3,191:3:108:191:6845:-606.042,-48.3247,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:134:3,131:3:108:131:4694:-412.544,-30.2629,0	0/1:143:72,71:72:2588:71:2533:-185.172,0,-190.121	0/1:193:100,93:100:3577:93:3320:-240.92,0,-264.037	0/1:68:29,39:29:1044:39:1400:-105.829,0,-73.8048	1/1:78:0,78:0:0:78:2779:-250.351,-23.4803,0	0/1:58:30,28:30:1076:28:1008:-73.5766,0,-79.6931	0/1:113:60,53:60:2148:53:1896:-136.902,0,-159.571	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:83:0,83:0:0:83:2960:-266.634,-24.9855,0	1/1:78:0,78:0:0:78:2784:-250.799,-23.4803,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:97:50,47:50:1796:47:1672:-121.567,0,-132.722	0/1:96:68,27:68:2440:27:964:-58.1192,0,-190.897	1/1:252:0,252:0:0:252:9006:-810.445,-75.8596,0	1/1:126:0,126:0:0:126:4512:-406.234,-37.9298,0
chr02	910107	.	C	T	169356	PASS	AB=0.48398;ABP=8.92394;AC=158;AF=0.849462;AN=186;AO=7671;CIGAR=1X;DP=9058;DPB=9058;DPRA=0;EPP=16625.6;EPPR=3012.67;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.9713;MQMR=60;NS=93;NUMALT=1;ODDS=3.33483;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=274412;QR=49042;RO=1386;RPL=7666;RPP=16617;RPPR=3012.67;RPR=5;RUN=1;SAF=7670;SAP=16651.7;SAR=1;SRF=1386;SRP=3012.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:99:0,99:0:0:99:3556:-320.247,-29.802,0	1/1:143:0,143:0:0:143:5125:-461.39,-43.0473,0	0/1:290:164,126:164:5795:126:4510:-318.768,0,-434.369	1/1:32:1,31:1:36:31:1112:-96.7931,-6.03469,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:113:0,113:0:0:113:4028:-362.708,-34.0164,0	1/1:107:0,107:0:0:107:3821:-344.053,-32.2102,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:102:0,102:0:0:102:3668:-330.322,-30.7051,0	1/1:69:0,69:0:0:69:2447:-220.482,-20.7711,0	1/1:103:0,103:0:0:103:3693:-332.572,-31.0061,0	1/1:84:0,84:0:0:84:2994:-269.691,-25.2865,0	0/1:77:48,29:48:1711:29:1032:-70.0142,0,-131.096	1/1:67:0,67:0:0:67:2399:-216.166,-20.169,0	0/1:62:28,34:28:961:34:1209:-90.4503,0,-68.132	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:192:106,86:106:3779:86:3092:-220.709,0,-282.512	0/1:196:84,112:84:2988:112:3997:-300.894,0,-210.152	1/1:71:0,71:0:0:71:2541:-228.94,-21.3731,0	1/1:172:2,170:2:72:170:6095:-541.813,-44.9404,0	1/1:85:4,81:4:144:81:2897:-247.651,-12.2739,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:241:0,241:0:0:241:8594:-773.455,-72.5482,0	1/1:221:0,221:0:0:221:7940:-714.62,-66.5276,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:289:0,289:0:0:289:10339:-930.424,-86.9977,0	1/1:127:0,127:0:0:127:4560:-410.565,-38.2308,0	0/1:102:55,47:55:1968:47:1679:-120.69,0,-146.69	1/1:16:0,16:0:0:16:574:-51.9943,-4.81648,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:10:0,10:0:0:10:360:-32.7265,-3.0103,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:188:0,188:0:0:188:6735:-606.216,-56.5936,0	0/1:79:44,35:44:1584:35:1251:-89.1129,0,-119.07	0/1:47:22,25:22:783:25:881:-65.4583,0,-56.6445	.:.:.:.:.:.:.:.	1/1:124:0,124:0:0:124:4441:-399.86,-37.3277,0	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	0/1:82:42,40:42:1491:40:1436:-104.853,0,-109.799	0/1:74:44,30:44:1548:30:1065:-73.8835,0,-117.333	0/1:58:33,25:33:1140:25:896:-63.5006,0,-85.4426	1/1:100:0,100:0:0:100:3564:-320.967,-30.103,0	0/1:84:29,55:29:1036:55:1949:-150.397,0,-68.2674	1/1:147:0,147:0:0:147:5288:-476.052,-44.2514,0	1/1:107:0,107:0:0:107:3831:-344.985,-32.2102,0	1/1:132:0,132:0:0:132:4724:-425.317,-39.736,0	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:81:36,45:36:1283:45:1616:-121.347,0,-91.3892	1/1:70:0,70:0:0:70:2499:-225.162,-21.0721,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:139:0,139:0:0:139:4950:-445.639,-41.8432,0	0/1:40:26,14:26:924:14:504:-33.6569,0,-71.4365	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:76:0,76:0:0:76:2717:-244.771,-22.8783,0	0/1:89:35,54:35:1232:54:1921:-146.373,0,-84.3896	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:292:0,292:0:0:292:10476:-942.754,-87.9008,0	1/1:147:0,147:0:0:147:5267:-474.143,-44.2514,0	1/1:81:2,79:2:72:79:2824:-247.563,-17.5467,0	1/1:55:0,55:0:0:55:1967:-177.304,-16.5567,0	0/1:192:101,91:101:3562:91:3263:-236.092,0,-262.991	1/1:236:0,236:0:0:236:8453:-760.77,-71.0431,0	0/1:49:22,27:22:783:27:968:-72.6869,0,-56.0425	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:48:24,24:24:856:24:849:-62.2784,0,-62.9117	1/1:30:0,30:0:0:30:1062:-95.8893,-9.0309,0	1/1:113:0,113:0:0:113:3999:-359.609,-34.0164,0	1/1:155:0,155:0:0:155:5557:-500.252,-46.6597,0	1/1:169:0,169:0:0:169:6063:-545.766,-50.8741,0	1/1:256:2,254:2:72:254:9108:-812.856,-70.227,0	0/1:39:22,17:22:780:17:612:-43.6733,0,-58.7829	1/1:194:3,191:3:108:191:6832:-604.874,-48.3247,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:134:3,131:3:108:131:4694:-412.544,-30.2629,0	0/1:142:70,72:70:2487:72:2560:-187.902,0,-181.337	0/1:191:97,94:97:3449:94:3384:-247.277,0,-253.126	0/1:64:25,39:25:872:39:1396:-106.673,0,-59.5277	1/1:77:0,77:0:0:77:2755:-248.191,-23.1793,0	0/1:56:28,28:28:967:28:999:-73.3668,0,-70.4801	0/1:114:60,54:60:2067:54:1886:-135.695,0,-151.977	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:84:0,83:0:0:83:2945:-264.924,-24.9855,0	1/1:79:0,79:0:0:79:2806:-252.781,-23.7814,0	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	0/1:95:50,45:50:1770:45:1612:-116.772,0,-130.984	0/1:96:68,28:68:2398:28:995:-60.9658,0,-187.176	1/1:261:0,261:0:0:261:9302:-836.747,-78.5688,0	1/1:129:0,129:0:0:129:4616:-415.6,-38.8329,0
chr02	940883	.	C	A	76756	PASS	AB=0.447251;ABP=51.8055;AC=152;AF=0.808511;AN=188;AO=3607;CIGAR=1X;DP=4811;DPB=4811;DPRA=3.43799;EPP=7835.51;EPPR=2615.29;GTI=7;LEN=1;MEANALT=1.01075;MQM=59.7366;MQMR=59.9576;NS=94;NUMALT=1;ODDS=0.410909;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129104;QR=42522;RO=1203;RPL=3607;RPP=7835.51;RPPR=2615.29;RPR=0;RUN=1;SAF=3607;SAP=7835.51;SAR=0;SRF=1203;SRP=2615.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1569:-141.426,-13.2453,0	1/1:107:0,107:0:0:107:3813:-343.295,-32.2102,0	1/1:149:0,149:0:0:149:5343:-480.927,-44.8535,0	0/1:77:69,8:69:2416:8:288:-3.0881,0,-194.514	1/1:35:0,35:0:0:35:1256:-113.321,-10.5361,0	1/1:62:0,62:0:0:62:2186:-196.995,-18.6639,0	1/1:58:0,58:0:0:58:2080:-187.459,-17.4597,0	1/1:118:0,118:0:0:118:4191:-377.357,-35.5215,0	1/1:102:0,102:0:0:102:3623:-326.268,-30.7051,0	1/1:13:0,13:0:0:13:464:-42.096,-3.91339,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:37:0,36:0:0:36:1288:-115.862,-10.8371,0	1/1:46:0,46:0:0:46:1648:-148.599,-13.8474,0	0/1:41:27,14:27:964:14:504:-33.3528,0,-74.7346	1/1:11:0,11:0:0:11:396:-35.9812,-3.31133,0	0/1:32:21,11:21:739:11:396:-26.3498,0,-57.1994	1/1:30:0,30:0:0:30:1076:-96.9942,-9.0309,0	1/1:32:0,32:0:0:32:1152:-103.973,-9.63296,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:91:70,21:70:2491:21:756:-40.9735,0,-197.049	0/1:128:71,57:71:2500:57:2052:-146.405,0,-186.72	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:27:0,27:0:0:27:957:-86.3353,-8.12781,0	0/1:135:14,121:14:504:121:4310:-347.429,0,-5.05749	1/1:111:0,111:0:0:111:3977:-358.111,-33.4143,0	1/1:13:0,13:0:0:13:460:-41.679,-3.91339,0	1/1:76:0,76:0:0:76:2709:-244.042,-22.8783,0	1/1:17:0,17:0:0:17:612:-55.2984,-5.11751,0	1/1:9:0,9:0:0:9:316:-28.7773,-2.70927,0	1/1:111:1,110:1:36:110:3937:-350.919,-29.8161,0	0/1:46:32,14:32:1130:14:504:-31.7806,0,-88.1596	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:8:0,8:0:0:8:288:-26.2665,-2.40824,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:9:7,2:7:237:2:72:-4.12745,0,-18.9498	0/1:10:1,9:1:36:9:324:-26.4951,0,-0.587975	0/1:180:86,94:86:3063:94:3357:-248.126,0,-221.714	0/1:49:28,21:28:1004:21:756:-53.6149,0,-75.9254	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:123:0,123:0:0:123:4420:-397.967,-37.0267,0	1/1:19:0,19:0:0:19:680:-61.5259,-5.71957,0	0/1:112:42,70:42:1473:70:2512:-192.602,0,-99.1267	0/1:16:12,4:12:415:4:144:-8.49556,0,-32.8638	0/0:26:25,1:25:874:1:36:0,-4.2285,-75.3769	1/1:12:1,11:1:36:11:396:-32.2637,-0.0140851,0	0/1:122:66,56:66:2344:56:2012:-144.627,0,-174.494	1/1:29:0,29:0:0:29:1036:-93.4231,-8.72987,0	1/1:29:2,27:2:72:27:972:-80.955,-1.89315,0	1/1:25:0,25:0:0:25:900:-81.3117,-7.52575,0	1/1:17:1,16:1:21:16:572:-49.7126,-3.01756,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:149:78,71:78:2728:71:2552:-185.075,0,-200.889	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:34:0,34:0:0:34:1209:-109.113,-10.235,0	1/1:89:0,89:0:0:89:3195:-287.678,-26.7917,0	0/1:48:40,8:40:1404:8:273:-10.4476,0,-112.205	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	1/1:83:0,83:0:0:83:2984:-268.158,-24.9855,0	0/1:40:36,4:36:1275:4:144:-1.27149,0,-103.011	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:12:1,11:1:36:11:396:-32.3697,-0.0140851,0	1/1:26:0,26:0:0:26:932:-84.129,-7.82678,0	0/1:88:12,76:12:432:76:2724:-218.909,0,-12.7306	1/1:5:0,5:0:0:5:180:-16.4949,-1.50515,0	0/1:74:60,14:60:2116:14:504:-23.4219,0,-168.43	1/1:28:2,26:2:72:26:924:-76.5702,-1.59212,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:136:0,136:0:0:136:4853:-436.918,-40.9401,0	0/1:26:21,5:21:735:5:176:-8.35667,0,-58.6446	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:174:0,174:0:0:174:6241:-561.77,-52.3792,0	1/1:70:0,70:0:0:70:2512:-226.327,-21.0721,0	1/1:157:3,154:3:108:154:5509:-485.149,-37.1865,0	1/1:29:0,29:0:0:29:1040:-93.9113,-8.72987,0	0/1:80:35,45:35:1248:45:1620:-122.001,0,-88.5425	1/1:51:2,49:2:72:49:1751:-151.036,-8.51581,0	1/1:10:0,10:0:0:10:360:-32.7425,-3.0103,0	1/1:90:0,90:0:0:90:3240:-291.814,-27.0927,0	0/1:191:86,105:86:3017:105:3753:-280.391,0,-214.264	0/1:116:96,20:96:3419:20:720:-30.2077,0,-273.003	0/1:31:27,4:27:955:4:144:-3.98169,0,-76.9329	1/1:12:1,11:1:32:11:396:-32.7834,-0.413047,0	0/1:26:17,9:17:608:9:324:-21.6791,0,-47.2252	0/0:36:33,3:33:1171:3:108:0,-0.76191,-95.6215	1/1:19:0,19:0:0:19:684:-61.887,-5.71957,0	1/1:45:0,45:0:0:45:1604:-144.648,-13.5464,0	1/1:44:0,44:0:0:44:1580:-142.486,-13.2453,0	1/1:20:0,20:0:0:20:720:-65.1257,-6.0206,0	0/1:55:32,23:32:1131:23:828:-58.2875,0,-85.5396	0/1:24:21,3:21:752:3:108:-2.85045,0,-60.7815	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:14:0,14:0:0:14:496:-44.9727,-4.21442,0
chr02	940939	.	G	C	124984	PASS	AB=0.483094;ABP=8.37009;AC=159;AF=0.845745;AN=188;AO=5729;CIGAR=1X;DP=6859;DPB=6859;DPRA=73.7419;EPP=12313.4;EPPR=2422.1;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.4421;MQMR=59.9076;NS=94;NUMALT=1;ODDS=0.264438;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203328;QR=39024;RO=1126;RPL=1;RPP=12434.7;RPPR=2448.09;RPR=5728;RUN=1;SAF=16;SAP=12304.8;SAR=5713;SRF=3;SRP=2422.1;SRR=1123;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1269:-114.5,-10.8371,0	1/1:77:0,77:0:0:77:2738:-246.643,-23.1793,0	1/1:116:0,116:0:0:116:4160:-374.556,-34.9195,0	0/1:168:90,78:90:3142:78:2761:-198.138,0,-232.435	1/1:46:0,46:0:0:46:1647:-148.459,-13.8474,0	1/1:55:0,55:0:0:55:1949:-175.674,-16.5567,0	1/1:184:0,184:0:0:184:6578:-591.964,-55.3895,0	1/1:92:0,92:0:0:92:3280:-293.661,-27.6948,0	1/1:100:0,100:0:0:100:3575:-321.28,-30.103,0	1/1:99:0,99:0:0:99:3524:-317.322,-29.802,0	1/1:35:0,35:0:0:35:1243:-112.107,-10.5361,0	1/1:41:0,41:0:0:41:1436:-129.519,-12.3422,0	1/1:30:0,30:0:0:30:1060:-95.7069,-9.0309,0	0/1:38:25,13:25:852:13:455:-29.8428,0,-65.5512	1/1:26:0,26:0:0:26:924:-83.4715,-7.82678,0	0/1:36:14,22:14:460:22:772:-58.9596,0,-30.8772	1/1:44:0,44:0:0:44:1572:-141.763,-13.2453,0	1/1:29:0,29:0:0:29:1028:-92.833,-8.72987,0	1/1:14:0,14:0:0:14:485:-43.977,-4.21442,0	0/1:205:102,103:102:3564:103:3676:-269.305,0,-258.869	0/1:117:65,52:65:2279:52:1836:-130.272,0,-170.15	1/1:190:0,190:0:0:190:6785:-608.776,-57.1957,0	1/1:28:0,28:0:0:28:1004:-90.6697,-8.42884,0	1/1:153:4,149:4:136:149:5286:-463.24,-33.4821,0	1/1:76:0,76:0:0:76:2696:-242.869,-22.8783,0	1/1:178:0,178:0:0:178:6321:-566.605,-53.5833,0	1/1:71:0,71:0:0:71:2502:-225.417,-21.3731,0	1/1:23:0,23:0:0:23:792:-71.2549,-6.92369,0	1/1:169:0,167:0:0:167:5988:-537.587,-50.272,0	1/1:117:0,117:0:0:117:4128:-371.536,-35.2205,0	0/1:102:59,43:59:2078:43:1505:-105.012,0,-156.585	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.83426,-0.60206,0	1/1:10:0,10:0:0:10:360:-32.7361,-3.0103,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:55:0,55:0:0:55:1959:-176.507,-16.5567,0	0/1:175:73,102:73:2537:102:3626:-273.686,0,-175.9	0/1:32:20,12:20:679:12:417:-28.2234,0,-51.786	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:137:0,137:0:0:137:4865:-437.957,-41.2411,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:125:57,68:57:1998:68:2368:-174.798,0,-142.462	0/1:35:23,12:23:803:12:428:-28.3195,0,-62.0523	0/1:43:22,21:22:767:21:744:-54.3338,0,-56.4051	1/1:76:0,76:0:0:76:2701:-243.151,-22.8783,0	0/1:78:45,32:45:1542:32:1144:-78.8565,0,-115.497	1/1:130:0,130:0:0:130:4620:-414.91,-39.1339,0	1/1:169:0,169:0:0:169:6002:-540.16,-50.8741,0	1/1:69:0,69:0:0:69:2459:-221.558,-20.7711,0	1/1:183:0,183:0:0:183:6442:-578.573,-55.0885,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:140:61,79:61:2132:79:2793:-209.38,0,-150	1/1:48:0,48:0:0:48:1707:-153.899,-14.4494,0	1/1:14:0,14:0:0:14:504:-45.6977,-4.21442,0	1/1:82:0,82:0:0:82:2869:-258.424,-24.6845,0	0/1:18:8,10:8:269:10:356:-26.9627,0,-19.1176	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:105:0,105:0:0:105:3727:-335.608,-31.6082,0	0/1:53:22,31:22:775:31:1104:-83.6561,0,-54.1166	1/1:3:0,3:0:0:3:102:-9.48583,-0.90309,0	1/1:115:0,115:0:0:115:4086:-367.852,-34.6185,0	1/1:111:1,110:1:36:110:3901:-345.792,-29.8161,0	1/1:61:3,58:3:108:58:2066:-176.107,-8.28766,0	1/1:64:0,64:0:0:64:2256:-203.259,-19.2659,0	0/1:115:64,51:64:2233:51:1778:-125.671,0,-166.613	1/1:103:1,101:1:36:101:3592:-317.972,-27.4666,0	0/1:13:6,7:6:212:7:248:-18.7508,0,-15.5114	1/1:116:0,116:0:0:116:4127:-371.516,-34.9195,0	0/1:40:19,21:19:663:21:730:-53.9701,0,-47.9523	1/1:19:0,19:0:0:19:668:-60.4457,-5.71957,0	1/1:216:0,216:0:0:216:7643:-687.731,-65.0225,0	1/1:42:0,42:0:0:42:1503:-135.556,-12.6433,0	1/1:152:0,152:0:0:152:5379:-484.166,-45.7566,0	1/1:119:0,119:0:0:119:4243:-382.026,-35.8226,0	0/1:79:39,40:39:1365:40:1440:-103.971,0,-99.365	1/1:51:0,51:0:0:51:1808:-162.987,-15.3525,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:67:0,67:0:0:67:2358:-212.465,-20.169,0	0/1:133:68,65:68:2326:65:2323:-169.268,0,-169.559	0/1:198:98,100:98:3405:100:3575:-262.316,0,-247.062	0/1:57:31,26:31:1033:26:921:-66.0403,0,-76.1082	1/1:27:0,27:0:0:27:948:-85.6012,-8.12781,0	0/1:42:28,14:28:944:14:500:-32.6805,0,-72.6197	0/1:38:28,10:28:936:10:352:-20.4146,0,-73.1026	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:39:0,39:0:0:39:1357:-122.418,-11.7402,0	1/1:43:0,43:0:0:43:1531:-138.066,-12.9443,0	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	0/1:51:29,22:29:988:22:766:-53.9059,0,-73.8706	0/1:23:17,6:17:582:6:212:-12.4948,0,-45.7714	1/1:107:1,106:1:36:106:3758:-334.815,-28.6119,0	1/1:42:0,42:0:0:42:1496:-134.765,-12.6433,0
chr02	950750	.	C	A	25169.4	PASS	AB=0.525804;ABP=20.2686;AC=27;AF=0.146739;AN=184;AO=1592;CIGAR=1X;DP=8982;DPB=8982;DPRA=1.29524;EPP=3459.99;EPPR=16045.8;GTI=2;LEN=1;MEANALT=1.02857;MQM=41.044;MQMR=40.4402;NS=92;NUMALT=1;ODDS=0.870229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57052;QR=264460;RO=7388;RPL=1592;RPP=3459.99;RPPR=15967.8;RPR=0;RUN=1;SAF=0;SAP=3459.99;SAR=1592;SRF=9;SRP=15967.8;SRR=7379;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:53,0:53:1908:0:0:0,-15.9546,-166.987	0/0:120:119,1:119:4272:1:36:0,-32.6691,-369.841	0/0:104:104,0:104:3721:0:0:0,-31.3071,-323.813	0/1:232:114,118:114:4080:118:4221:-297.348,0,-279.206	0/0:56:56,0:56:1989:0:0:0,-16.8577,-171.972	0/0:52:52,0:52:1868:0:0:0,-15.6536,-163.758	0/0:118:118,0:118:4213:0:0:0,-35.5215,-360.563	0/0:141:140,0:140:5001:0:0:0,-42.1442,-437.184	0/0:80:80,0:80:2857:0:0:0,-24.0824,-249.199	0/0:84:84,0:84:3012:0:0:0,-25.2865,-257.869	0/0:22:22,0:22:788:0:0:0,-6.62266,-67.723	0/0:44:44,0:44:1584:0:0:0,-13.2453,-138.943	0/0:49:49,0:49:1760:0:0:0,-14.7505,-154.068	0/1:40:21,19:21:737:19:679:-46.9498,0,-51.5168	0/0:41:41,0:41:1461:0:0:0,-12.3422,-126.572	0/1:33:14,19:14:504:19:676:-49.3784,0,-33.6482	0/0:54:54,0:54:1936:0:0:0,-16.2556,-169.858	0/0:43:43,0:43:1548:0:0:0,-12.9443,-135.69	0/0:24:24,0:24:864:0:0:0,-7.22472,-75.8956	0/1:225:98,127:98:3497:127:4541:-328.182,0,-231.48	0/1:165:70,95:70:2496:95:3416:-247.344,0,-166.142	0/0:165:165,0:165:5886:0:0:0,-49.6699,-499.504	0/0:80:80,0:80:2853:0:0:0,-24.0824,-243.898	0/0:117:106,11:106:3808:11:396:0,-0.366541,-293.734	0/0:56:56,0:56:2016:0:0:0,-16.8577,-174.325	0/0:298:298,0:298:10655:0:0:0,-89.7069,-907.191	0/0:212:212,0:212:7574:0:0:0,-63.8184,-651.919	0/0:21:21,0:21:756:0:0:0,-6.32163,-64.2903	0/0:269:269,0:269:9617:0:0:0,-80.9771,-818.781	0/0:187:186,1:186:6665:1:36:0,-52.8119,-583.644	0/1:194:97,97:97:3465:97:3465:-243.452,0,-240.164	0/0:9:9,0:9:324:0:0:0,-2.70927,-27.9985	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.7196	.:.:.:.:.:.:.:.	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.8213	.:.:.:.:.:.:.:.	0/0:169:169,0:169:6049:0:0:0,-50.8741,-515.671	0/1:272:132,140:132:4740:140:5021:-353.509,0,-326.81	0/1:29:14,15:14:504:15:540:-37.9758,0,-35.5694	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.43644	0/0:168:168,0:168:6021:0:0:0,-50.573,-517.241	0/0:14:14,0:14:504:0:0:0,-4.21442,-44.2214	0/1:154:84,70:84:3020:70:2503:-170.285,0,-212.373	0/1:46:24,22:24:849:22:788:-55.0706,0,-59.202	0/1:51:24,27:24:856:27:972:-69.4923,0,-58.5865	0/0:76:76,0:76:2728:0:0:0,-22.8783,-231.978	0/1:175:94,81:94:3353:81:2916:-199.718,0,-238.092	0/0:197:197,0:197:7061:0:0:0,-59.3029,-603.741	0/0:102:102,0:102:3645:0:0:0,-30.7051,-310.145	0/0:143:143,0:143:5125:0:0:0,-43.0473,-438.851	0/0:164:164,0:164:5837:0:0:0,-49.3689,-494.518	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.3923	0/1:147:75,72:75:2696:72:2570:-178.066,0,-190.664	0/0:52:52,0:52:1856:0:0:0,-15.6536,-158.595	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.0268	0/0:181:179,2:179:6417:2:72:0,-47.8731,-547.645	0/1:51:28,23:28:1008:23:828:-56.8775,0,-71.1881	0/1:4:1,3:1:36:3:108:-8.28116,0,-2.27658	0/0:34:34,0:34:1220:0:0:0,-10.235,-104.179	0/0:60:60,0:60:2152:0:0:0,-18.0618,-184.194	0/1:97:58,39:58:2088:39:1400:-93.233,0,-148.806	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.9166	0/0:376:376,0:376:13482:0:0:0,-113.187,-1154.05	0/0:120:120,0:120:4278:0:0:0,-36.1236,-369.784	0/0:69:65,4:65:2317:4:144:0,-7.86985,-188.084	0/0:111:111,0:111:3980:0:0:0,-33.4143,-341.297	0/1:232:92,140:92:3308:140:5009:-366.722,0,-210.744	0/0:85:82,2:82:2906:2:55:0,-20.4358,-245.078	0/1:3:1,2:1:36:2:72:-5.71023,0,-2.48451	0/0:64:64,0:64:2285:0:0:0,-19.2659,-199.802	0/1:69:37,32:37:1328:32:1152:-76.3831,0,-92.2228	0/0:17:17,0:17:604:0:0:0,-5.11751,-52.5998	0/0:122:122,0:122:4376:0:0:0,-36.7257,-382.959	0/0:61:61,0:61:2192:0:0:0,-18.3628,-192.009	0/0:145:145,0:145:5151:0:0:0,-43.6493,-443.59	0/0:232:232,0:232:8312:0:0:0,-69.839,-710.772	0/1:56:29,27:29:1040:27:968:-67.1793,0,-74.4413	0/0:106:106,0:106:3789:0:0:0,-31.9092,-332.143	0/0:16:16,0:16:572:0:0:0,-4.81648,-50.3121	0/0:154:153,1:153:5489:1:36:0,-42.8779,-468.229	0/1:114:48,66:48:1724:66:2368:-170.501,0,-116.348	0/1:241:103,138:103:3681:138:4952:-356.891,0,-241.925	0/1:103:46,57:46:1656:57:2048:-147.897,0,-111.313	0/0:43:43,0:43:1544:0:0:0,-12.9443,-131.934	0/1:67:41,26:41:1472:26:936:-61.7336,0,-105.055	0/1:98:40,58:40:1436:58:2080:-151.014,0,-93.7421	0/0:40:40,0:40:1440:0:0:0,-12.0412,-126.464	0/0:48:48,0:48:1701:0:0:0,-14.4494,-148.742	0/0:33:33,0:33:1184:0:0:0,-9.93399,-103.361	0/0:13:13,0:13:464:0:0:0,-3.91339,-40.1603	0/1:33:14,19:14:504:19:684:-49.8019,0,-34.0225	0/1:53:16,37:16:576:37:1328:-99.9392,0,-33.3661	0/0:169:169,0:169:6068:0:0:0,-50.8741,-517.247	0/0:82:81,1:81:2901:1:36:0,-21.2038,-244.461
chr02	951394	.	A	G,C	431017	PASS	AB=0.483381,0.514949;ABP=17.3735,14.6315;AC=159,29;AF=0.845745,0.154255;AN=188;AO=14030,3134;CIGAR=1X,1X;DP=17191;DPB=17191;DPRA=0,1.33997;EPP=11285.6,2029.05;EPPR=38.1882;GTI=4;LEN=1,1;MEANALT=1.46809,2.08108;MQM=45.3942,45.0026;MQMR=44.5;NS=94;NUMALT=2;ODDS=1.28496;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=497126,110377;QR=716;RO=20;RPL=8233,2045;RPP=921.451,636.254;RPPR=6.91895;RPR=5797,1089;RUN=1,1;SAF=5487,1333;SAP=1448.46,154.767;SAR=8543,1801;SRF=12;SRP=4.74748;SRR=8;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51,0:0:0:51,0:1812,0:-134.418,-15.3525,0,-134.418,-15.3525,-134.418	1/1:279:0,279,0:0:0:279,0:9939,0:-773.093,-83.9874,0,-773.093,-83.9874,-773.093	1/1:277:0,277,0:0:0:277,0:9828,0:-778.115,-83.3853,0,-778.115,-83.3853,-778.115	1/2:455:1,209,245:1:36:209,245:7425,8698:-1171.83,-638.166,-577.818,-531.395,0,-460.211	1/1:218:0,218,0:0:0:218,0:7732,0:-632.096,-65.6245,0,-632.096,-65.6245,-632.096	1/1:72:0,72,0:0:0:72,0:2510,0:-170.068,-21.6742,0,-170.068,-21.6742,-170.068	1/1:245:1,244,0:1:36:244,0:8634,0:-651.528,-70.2717,0,-651.829,-73.4513,-654.661	1/1:243:1,242,0:1:36:242,0:8602,0:-659.024,-69.552,0,-659.325,-72.8493,-662.263	1/1:172:0,172,0:0:0:172,0:6094,0:-469.163,-51.7772,0,-469.163,-51.7772,-469.163	1/1:124:1,123,0:1:36:123,0:4311,0:-288.918,-33.7294,0,-289.219,-37.0267,-292.157	1/1:155:0,155,0:0:0:155,0:5485,0:-384.725,-46.6597,0,-384.725,-46.6597,-384.725	1/1:151:0,151,0:0:0:151,0:5317,0:-386.588,-45.4555,0,-386.588,-45.4555,-386.588	1/1:147:1,146,0:1:36:146,0:5168,0:-356.586,-41.1278,0,-356.887,-43.9504,-359.397	1/2:151:0,70,81:0:0:70,81:2442,2838:-329.842,-182.314,-161.242,-147.803,0,-123.42	1/1:129:0,129,0:0:0:129,0:4581,0:-329.198,-38.8329,0,-329.198,-38.8329,-329.198	1/2:112:0,55,57:0:0:55,57:1918,2017:-255.386,-129.312,-112.756,-126.36,0,-109.202	1/1:135:0,135,0:0:0:135,0:4801,0:-348.999,-40.6391,0,-348.999,-40.6391,-348.999	1/1:129:0,129,0:0:0:129,0:4579,0:-322.762,-38.8329,0,-322.762,-38.8329,-322.762	1/1:107:0,107,0:0:0:107,0:3782,0:-275.013,-32.2102,0,-275.013,-32.2102,-275.013	1/2:464:1,233,230:1:36:233,230:8231,8164:-1223.35,-604.294,-536.902,-616.596,0,-550.107	1/2:314:0,152,162:0:0:152,162:5439,5712:-768.942,-397.603,-351.847,-371.644,0,-322.877	1/1:79:0,78,1:0:0:78,1:2759,36:-220.627,-23.4803,0,-217.689,-20.1831,-217.388	1/1:143:1,138,4:1:36:138,4:4892,144:-346.255,-39.3856,0,-337.01,-31.977,-337.967	1/1:217:0,196,21:0:0:196,21:6956,744:-517.174,-59.0019,0,-464.405,-5.92204,-458.084	1/1:114:0,114,0:0:0:114,0:4031,0:-328.277,-34.3174,0,-328.277,-34.3174,-328.277	1/1:428:0,428,0:0:0:428,0:15144,0:-1205.96,-128.841,0,-1205.96,-128.841,-1205.96	1/1:385:1,384,0:1:36:384,0:13619,0:-1035.07,-112.709,0,-1035.37,-115.596,-1037.94	1/1:54:0,54,0:0:0:54,0:1923,0:-145.373,-16.2556,0,-145.373,-16.2556,-145.373	1/1:495:0,495,0:0:0:495,0:17579,0:-1363.5,-149.01,0,-1363.5,-149.01,-1363.5	1/1:258:0,258,0:0:0:258,0:9154,0:-730.879,-77.6657,0,-730.879,-77.6657,-730.879	1/2:384:0,203,181:0:0:203,181:7183,6449:-1006.57,-476.545,-415.436,-530.35,0,-475.863	1/1:13:0,13,0:0:0:13,0:464,0:-36.9595,-3.91339,0,-36.9595,-3.91339,-36.9595	1/1:23:0,23,0:0:0:23,0:815,0:-60.7392,-6.92369,0,-60.7392,-6.92369,-60.7392	1/1:12:0,12,0:0:0:12,0:424,0:-32.4097,-3.61236,0,-32.4097,-3.61236,-32.4097	1/1:10:0,10,0:0:0:10,0:360,0:-26.3055,-3.0103,0,-26.3055,-3.0103,-26.3055	1/2:26:0,19,7:0:0:19,7:672,244:-59.539,-14.6318,-8.91227,-45.178,0,-43.0707	1/1:347:0,346,0:0:0:346,0:12238,0:-896.438,-104.156,0,-896.438,-104.156,-896.438	1/2:184:0,87,97:0:0:87,97:3081,3372:-462.517,-242.679,-216.489,-220.151,0,-190.951	1/2:143:0,69,74:0:0:69,74:2439,2594:-328.225,-173.635,-152.864,-154.878,0,-132.602	1/1:19:0,19,0:0:0:19,0:680,0:-57.686,-5.71957,0,-57.686,-5.71957,-57.686	1/1:287:1,286,0:1:36:286,0:10139,0:-816.554,-83.4928,0,-816.855,-86.0946,-819.167	1/1:108:0,108,0:0:0:108,0:3836,0:-292.654,-32.5112,0,-292.654,-32.5112,-292.654	1/2:264:1,128,135:1:36:128,135:4552,4788:-668.84,-338.307,-302.713,-327.855,0,-290.153	1/2:163:1,76,86:1:36:76,86:2683,2981:-371.349,-198.477,-178.167,-170.576,0,-147.255	1/2:143:0,71,72:0:0:71,72:2472,2518:-338.429,-173.267,-151.894,-165.459,0,-143.785	1/1:131:0,131,0:0:0:131,0:4659,0:-356.341,-39.4349,0,-356.341,-39.4349,-356.341	1/2:265:1,131,133:1:36:131,133:4655,4694:-671.144,-342.537,-306.04,-325.928,0,-288.829	1/1:286:0,285,0:0:0:285,0:10120,0:-799.846,-85.7936,0,-799.846,-85.7936,-799.846	1/1:162:0,162,0:0:0:162,0:5763,0:-423.982,-48.7669,0,-423.982,-48.7669,-423.982	1/1:333:0,332,1:0:0:332,1:11789,36:-969.712,-99.942,0,-966.775,-96.6447,-966.474	1/1:260:0,259,1:0:0:259,1:9121,36:-685.976,-77.9668,0,-683.974,-75.7091,-683.673	1/1:18:0,18,0:0:0:18,0:644,0:-50.4207,-5.41854,0,-50.4207,-5.41854,-50.4207	1/2:229:0,120,108:0:0:120,108:4267,3805:-573.593,-272.576,-236.453,-300.971,0,-268.46	1/1:74:0,74,0:0:0:74,0:2635,0:-205.589,-22.2762,0,-205.589,-22.2762,-205.589	1/1:13:0,13,0:0:0:13,0:464,0:-33.106,-3.91339,0,-33.106,-3.91339,-33.106	1/1:367:0,367,0:0:0:367,0:13020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chr02	983884	.	TTTG	CTTA,TTTA	128011	PASS	AB=0.468216,0.528715;ABP=23.0257,19.3473;AC=158,28;AF=0.849462,0.150538;AN=186;AO=4708,1213;CIGAR=1X2M1X,3M1X;DP=5933;DPB=5933.25;DPRA=0,1.45711;EPP=10226.3,2637.01;EPPR=5.18177;GTI=7;LEN=4,1;MEANALT=1.47312,2.17647;MQM=59.9609,60;MQMR=60;NS=93;NUMALT=2;ODDS=0.850886;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=166857,43077;QR=36;RO=1;RPL=0,0;RPP=10226.3,2637.01;RPPR=5.18177;RPR=4708,1213;RUN=1,1;SAF=4708,1213;SAP=10226.3,2637.01;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10,0:0:0:10,0:341,0:-31.0191,-3.0103,0,-31.0191,-3.0103,-31.0191	1/1:107:0,107,0:0:0:107,0:3740,0:-336.802,-32.2102,0,-336.802,-32.2102,-336.802	1/1:62:0,62,0:0:0:62,0:2198,0:-198.085,-18.6639,0,-198.085,-18.6639,-198.085	1/2:83:0,38,45:0:0:38,45:1349,1589:-239.669,-129.752,-118.313,-110.271,0,-96.7243	1/1:18:0,18,0:0:0:18,0:640,0:-57.9292,-5.41854,0,-57.9292,-5.41854,-57.9292	1/1:15:0,15,0:0:0:15,0:538,0:-48.7558,-4.51545,0,-48.7558,-4.51545,-48.7558	1/1:56:0,56,0:0:0:56,0:1985,0:-178.925,-16.8577,0,-178.925,-16.8577,-178.925	1/1:90:0,88,0:0:0:88,0:3101,0:-278.927,-26.4906,0,-278.927,-26.4906,-278.927	1/1:38:0,38,0:0:0:38,0:1342,0:-121.08,-11.4391,0,-121.08,-11.4391,-121.08	1/1:98:0,98,0:0:0:98,0:3463,0:-311.885,-29.5009,0,-311.885,-29.5009,-311.885	1/1:32:0,32,0:0:0:32,0:1143,0:-103.179,-9.63296,0,-103.179,-9.63296,-103.179	1/1:87:0,87,0:0:0:87,0:3085,0:-277.879,-26.1896,0,-277.879,-26.1896,-277.879	1/1:65:0,65,0:0:0:65,0:2278,0:-205.281,-19.567,0,-205.281,-19.567,-205.281	1/2:57:0,35,22:0:0:35,22:1232,777:-163.923,-63.6286,-53.0925,-100.647,0,-94.024	1/1:71:0,71,0:0:0:71,0:2540,0:-228.851,-21.3731,0,-228.851,-21.3731,-228.851	1/2:53:0,28,25:0:0:28,25:982,892:-152.984,-73.0739,-64.6451,-80.2636,0,-72.7379	1/1:68:0,68,0:0:0:68,0:2389,0:-215.266,-20.47,0,-215.266,-20.47,-215.266	1/1:40:0,40,0:0:0:40,0:1424,0:-128.457,-12.0412,0,-128.457,-12.0412,-128.457	1/1:32:0,32,0:0:0:32,0:1137,0:-102.638,-9.63296,0,-102.638,-9.63296,-102.638	1/2:122:0,54,68:0:0:54,68:1913,2354:-347.49,-191.648,-175.393,-156.192,0,-135.722	1/2:159:1,34,123:1:36:34,123:1208,4375:-451.77,-353.635,-346.338,-95.5265,0,-61.4374	1/1:36:0,36,0:0:0:36,0:1276,0:-115.143,-10.8371,0,-115.143,-10.8371,-115.143	1/1:23:0,23,0:0:0:23,0:810,0:-73.2172,-6.92369,0,-73.2172,-6.92369,-73.2172	1/1:46:0,45,1:0:0:45,1:1549,36:-139.335,-13.5464,0,-136.397,-10.2491,-136.096	1/1:26:0,26,0:0:0:26,0:935,0:-84.4694,-7.82678,0,-84.4694,-7.82678,-84.4694	1/1:255:0,254,0:0:0:254,0:8961,0:-806.217,-76.4616,0,-806.217,-76.4616,-806.217	1/1:94:0,94,0:0:0:94,0:3327,0:-299.641,-28.2968,0,-299.641,-28.2968,-299.641	1/1:28:0,28,0:0:0:28,0:996,0:-89.9549,-8.42884,0,-89.9549,-8.42884,-89.9549	1/1:137:0,137,0:0:0:137,0:4873,0:-438.725,-41.2411,0,-438.725,-41.2411,-438.725	1/1:58:0,58,0:0:0:58,0:2076,0:-187.111,-17.4597,0,-187.111,-17.4597,-187.111	1/2:44:0,19,25:0:0:19,25:670,873:-125.915,-71.3588,-65.6392,-54.9067,0,-47.381	1/1:5:0,5,0:0:0:5,0:178,0:-16.3686,-1.50515,0,-16.3686,-1.50515,-16.3686	.:.:.:.:.:.:.:.	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:221:0,219,0:0:0:219,0:7826,0:-704.01,-65.9256,0,-704.01,-65.9256,-704.01	1/2:133:0,60,73:0:0:60,73:2118,2604:-385.104,-212.634,-194.572,-172.825,0,-150.85	1/2:68:0,38,30:0:0:38,30:1352,1070:-197.766,-87.5811,-76.142,-110.541,0,-101.51	1/1:1:0,1,0:0:0:1,0:24,0:-2.39989,-0.30103,0,-2.39989,-0.30103,-2.39989	1/1:38:0,38,0:0:0:38,0:1347,0:-121.531,-11.4391,0,-121.531,-11.4391,-121.531	1/1:14:0,14,0:0:0:14,0:498,0:-45.1555,-4.21442,0,-45.1555,-4.21442,-45.1555	1/2:67:0,29,38:0:0:29,38:1009,1360:-193.298,-111.261,-102.532,-82.389,0,-70.9499	1/2:74:0,38,36:0:0:38,36:1355,1292:-216.2,-105.747,-94.3075,-110.811,0,-99.9738	1/2:58:0,30,28:0:0:30,28:1067,996:-168.481,-81.526,-72.4951,-87.3107,0,-78.8818	1/1:15:0,15,0:0:0:15,0:533,0:-48.3034,-4.51545,0,-48.3034,-4.51545,-48.3034	1/2:96:0,43,53:0:0:43,53:1516,1888:-277.359,-154.244,-141.3,-123.469,0,-107.514	1/1:93:0,93,0:0:0:93,0:3318,0:-298.781,-27.9958,0,-298.781,-27.9958,-298.781	1/1:63:0,63,0:0:0:63,0:2209,0:-199.075,-18.9649,0,-199.075,-18.9649,-199.075	1/1:100:0,99,1:0:0:99,1:3520,36:-316.649,-29.802,0,-313.712,-26.5047,-313.41	1/1:53:0,53,0:0:0:53,0:1866,0:-168.219,-15.9546,0,-168.219,-15.9546,-168.219	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:88:0,43,44:0:0:43,44:1516,1564:-250.96,-127.525,-114.58,-123.507,0,-110.261	1/1:11:0,11,0:0:0:11,0:387,0:-35.1668,-3.31133,0,-35.1668,-3.31133,-35.1668	1/1:5:0,5,0:0:0:5,0:174,0:-16.0013,-1.50515,0,-16.0013,-1.50515,-16.0013	1/1:68:0,68,0:0:0:68,0:2398,0:-216.078,-20.47,0,-216.078,-20.47,-216.078	1/2:4:0,2,2:0:0:2,2:72,68:-11.7405,-5.85565,-5.25359,-6.23466,0,-5.6326	1/2:7:0,3,4:0:0:3,4:107,144:-20.8306,-12.1095,-11.2064,-9.07908,0,-7.87496	1/1:5:0,5,0:0:0:5,0:172,0:-15.8174,-1.50515,0,-15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chr02	1033110	.	TAC	CAT,TAT	242200	PASS	AB=0.514503,0.482055;ABP=10.4428,14.3886;AC=158,30;AF=0.840426,0.159574;AN=188;AO=9448,1967;CIGAR=1X1M1X,2M1X;DP=11470;DPB=11473.3;DPRA=0,1.1599;EPP=20519.1,4274.3;EPPR=16.0391;GTI=2;LEN=3,1;MEANALT=1.73404,2.29412;MQM=50.1985,59.9614;MQMR=60;NS=94;NUMALT=2;ODDS=0.867417;PAIRED=0,0;PAIREDR=0;PAO=5,5;PQA=178,178;PQR=0;PRO=0;QA=329464,70483;QR=216;RO=6;RPL=0,0;RPP=20519.1,4274.3;RPPR=16.0391;RPR=9448,1967;RUN=1,1;SAF=9448,1967;SAP=20519.1,4274.3;SAR=0,0;SRF=6;SRP=16.0391;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43,0:0:0:43,0:1454,0:-130.372,-12.9443,0,-130.372,-12.9443,-130.372	1/1:200:0,196,1:0:0:196,1:6755,36:-601.334,-59.0019,0,-598.396,-56.0503,-598.095	1/1:130:0,130,0:0:0:130,0:4518,0:-402.455,-39.1339,0,-402.455,-39.1339,-402.455	1/2:221:0,108,113:0:0:108,113:3775,4037:-634.385,-329.395,-296.884,-305.282,0,-271.266	1/1:104:0,103,0:0:0:103,0:3602,0:-322.758,-31.0061,0,-322.758,-31.0061,-322.758	1/1:87:0,87,0:0:0:87,0:3033,0:-271.134,-26.1896,0,-271.134,-26.1896,-271.134	1/1:157:0,157,0:0:0:157,0:5465,0:-489.732,-47.2617,0,-489.732,-47.2617,-489.732	1/1:223:0,221,0:0:0:221,0:7616,0:-680.01,-66.5276,0,-680.01,-66.5276,-680.01	1/1:80:0,80,0:0:0:80,0:2725,0:-243.933,-24.0824,0,-243.933,-24.0824,-243.933	1/1:91:0,90,0:0:0:90,0:3157,0:-283.139,-27.0927,0,-283.139,-27.0927,-283.139	1/1:51:0,51,0:0:0:51,0:1797,0:-161.291,-15.3525,0,-161.291,-15.3525,-161.291	1/1:85:0,85,0:0:0:85,0:2991,0:-267.326,-25.5876,0,-267.326,-25.5876,-267.326	1/1:73:0,72,1:0:0:72,1:2433,36:-216.637,-21.6742,0,-213.699,-18.3769,-213.398	1/2:97:0,38,59:0:0:38,59:1308,2120:-279.038,-173.308,-161.869,-106.079,0,-88.3182	1/1:59:0,59,0:0:0:59,0:2094,0:-188.122,-17.7608,0,-188.122,-17.7608,-188.122	1/2:61:0,25,36:0:0:25,36:893,1296:-178.587,-106.107,-98.5811,-72.8371,0,-62	1/1:100:0,100,0:0:0:100,0:3389,0:-302.055,-30.103,0,-302.055,-30.103,-302.055	1/1:71:0,71,0:0:0:71,0:2490,0:-222.035,-21.3731,0,-222.035,-21.3731,-222.035	1/1:28:0,28,0:0:0:28,0:974,0:-86.6853,-8.42884,0,-86.6853,-8.42884,-86.6853	1/2:293:0,164,129:0:0:164,129:5799,4628:-847.912,-377.848,-328.479,-470.419,0,-431.586	1/2:160:0,59,101:0:0:59,101:2038,3616:-458.874,-295.237,-277.476,-163.985,0,-133.581	1/1:208:0,208,0:0:0:208,0:7256,0:-651.193,-62.6142,0,-651.193,-62.6142,-651.193	1/1:88:0,88,0:0:0:88,0:3034,0:-271.21,-26.4906,0,-271.21,-26.4906,-271.21	1/2:136:0,121,13:0:0:121,13:4162,468:-374.13,-38.2591,-1.83452,-335.942,0,-332.029	1/1:83:0,83,0:0:0:83,0:2931,0:-262.423,-24.9855,0,-262.423,-24.9855,-262.423	1/1:410:0,405,0:0:0:405,0:14116,0:-1266.44,-121.917,0,-1266.44,-121.917,-1266.44	1/1:199:0,199,0:0:0:199,0:7000,0:-626.328,-59.905,0,-626.328,-59.905,-626.328	1/1:36:0,36,0:0:0:36,0:1278,0:-114.315,-10.8371,0,-114.315,-10.8371,-114.315	1/1:271:0,268,0:0:0:268,0:9458,0:-848.173,-80.676,0,-848.173,-80.676,-848.173	1/1:331:0,329,0:0:0:329,0:11358,0:-1015.55,-99.0389,0,-1015.55,-99.0389,-1015.55	1/2:219:2,121,94:2:72:121,94:4222,3380:-610.59,-269.882,-239.332,-335.429,0,-313.007	1/1:5:0,5,0:0:0:5,0:170,0:-15.576,-1.50515,0,-15.576,-1.50515,-15.576	1/1:6:0,6,0:0:0:6,0:212,0:-19.1343,-1.80618,0,-19.1343,-1.80618,-19.1343	1/1:11:0,11,0:0:0:11,0:375,0:-33.8661,-3.31133,0,-33.8661,-3.31133,-33.8661	1/1:4:0,4,0:0:0:4,0:139,0:-12.7758,-1.20412,0,-12.7758,-1.20412,-12.7758	1/2:3:0,2,1:0:0:2,1:68,36:-8.64141,-3.29724,-2.69518,-5.69451,0,-5.39348	1/1:193:0,189,0:0:0:189,0:6625,0:-594.553,-56.8947,0,-594.553,-56.8947,-594.553	1/2:370:0,178,192:0:0:178,192:6183,6857:-1058.82,-559.395,-505.812,-499.773,0,-441.975	1/2:55:0,20,35:0:0:20,35:686,1233:-155.998,-100.736,-94.7154,-55.6068,0,-45.0708	1/1:5:0,5,0:0:0:5,0:180,0:-16.482,-1.50515,0,-16.482,-1.50515,-16.482	1/1:344:0,344,0:0:0:344,0:12036,0:-1075.85,-103.554,0,-1075.85,-103.554,-1075.85	1/1:28:0,28,0:0:0:28,0:985,0:-88.6269,-8.42884,0,-88.6269,-8.42884,-88.6269	1/2:217:2,110,105:2:72:110,105:3793,3772:-607.144,-301.806,-274.567,-300.028,0,-274.295	1/2:60:0,20,40:0:0:20,40:708,1436:-174.983,-117.496,-111.476,-57.8418,0,-45.8006	1/2:68:0,34,33:0:0:34,33:1184,1184:-192.778,-96.7466,-86.5116,-96.1944,0,-86.2604	1/1:96:0,96,0:0:0:96,0:3344,0:-299.544,-28.8989,0,-299.544,-28.8989,-299.544	1/2:154:0,92,62:0:0:92,62:3206,2216:-439.028,-181.041,-153.346,-258.34,0,-239.676	1/1:254:0,253,0:0:0:253,0:8809,0:-788.686,-76.1606,0,-788.686,-76.1606,-788.686	1/1:122:0,122,0:0:0:122,0:4282,0:-384.207,-36.7257,0,-384.207,-36.7257,-384.207	1/1:217:0,216,0:0:0:216,0:7541,0:-675.722,-65.0225,0,-675.722,-65.0225,-675.722	1/1:170:0,168,0:0:0:168,0:5917,0:-530.175,-50.573,0,-530.175,-50.573,-530.175	1/1:12:0,12,0:0:0:12,0:427,0:-38.4561,-3.61236,0,-38.4561,-3.61236,-38.4561	1/2:254:0,128,126:0:0:128,126:4447,4528:-728.023,-369.756,-331.224,-358.619,0,-320.689	1/1:59:0,59,0:0:0:59,0:2069,0:-186.172,-17.7608,0,-186.172,-17.7608,-186.172	1/1:13:0,13,0:0:0:13,0:458,0:-40.9907,-3.91339,0,-40.9907,-3.91339,-40.9907	1/1:142:0,142,0:0:0:142,0:4970,0:-445.064,-42.7463,0,-445.064,-42.7463,-445.064	1/2:67:0,35,32:0:0:35,32:1175,1152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chr02	1033153	.	CATAAAATAG	TATAAATAG,TATAAAATAG	239465	PASS	AB=0.514706,0.479167;ABP=10.6743,18.3916;AC=158,30;AF=0.840426,0.159574;AN=188;AO=9509,1959;CIGAR=1X2M1D6M,1X9M;DP=11526;DPB=10574.2;DPRA=0,1.14698;EPP=20642.9,4256.92;EPPR=11.6962;GTI=2;LEN=9,1;MEANALT=1.8617,2.65625;MQM=50.3993,59.9786;MQMR=60;NS=94;NUMALT=2;ODDS=0.279149;PAIRED=0,0;PAIREDR=0;PAO=18.5,18.5;PQA=574,574;PQR=0;PRO=0;QA=326985,69833;QR=139;RO=4;RPL=9508,1959;RPP=20642.9,4256.92;RPPR=11.6962;RPR=1,0;RUN=1,1;SAF=9509,1959;SAP=20651.5,4256.92;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,42,0:0:0:42,0:1438,0:-128.404,-12.6433,0,-128.404,-12.6433,-128.404	1/1:203:0,202,0:0:0:202,0:6940,0:-619.042,-60.8081,0,-619.042,-60.8081,-619.042	1/1:132:0,132,0:0:0:132,0:4525,0:-404.454,-39.736,0,-404.454,-39.736,-404.454	1/2:222:0,106,114:0:0:106,114:3664,4047:-626.485,-329.804,-297.895,-296.737,0,-262.419	1/1:104:0,104,0:0:0:104,0:3574,0:-320.643,-31.3071,0,-320.643,-31.3071,-320.643	1/1:86:0,86,0:0:0:86,0:2986,0:-266.723,-25.8886,0,-266.723,-25.8886,-266.723	1/1:154:0,151,0:0:0:151,0:5133,0:-460.359,-45.4555,0,-460.359,-45.4555,-460.359	1/1:220:0,220,0:0:0:220,0:7522,0:-672.058,-66.2266,0,-672.058,-66.2266,-672.058	1/1:79:0,79,0:0:0:79,0:2693,0:-241.13,-23.7814,0,-241.13,-23.7814,-241.13	1/1:90:0,89,0:0:0:89,0:3105,0:-278.442,-26.7917,0,-278.442,-26.7917,-278.442	1/1:52:0,52,0:0:0:52,0:1809,0:-162.424,-15.6536,0,-162.424,-15.6536,-162.424	1/1:81:0,81,0:0:0:81,0:2750,0:-246.131,-24.3834,0,-246.131,-24.3834,-246.131	1/1:73:0,73,0:0:0:73,0:2476,0:-221.248,-21.9752,0,-221.248,-21.9752,-221.248	1/2:97:0,38,57:0:0:38,57:1283,2040:-269.962,-166.436,-154.996,-103.592,0,-86.4332	1/1:60:0,60,0:0:0:60,0:2090,0:-187.82,-18.0618,0,-187.82,-18.0618,-187.82	1/2:62:0,25,37:0:0:25,37:874,1324:-179.136,-108.324,-100.798,-71.1639,0,-60.0258	1/1:99:0,98,0:0:0:98,0:3391,0:-302.503,-29.5009,0,-302.503,-29.5009,-302.503	1/1:70:0,70,0:0:0:70,0:2402,0:-214.755,-21.0721,0,-214.755,-21.0721,-214.755	1/1:28:0,28,0:0:0:28,0:991,0:-88.2048,-8.42884,0,-88.2048,-8.42884,-88.2048	1/2:295:0,163,130:0:0:163,130:5675,4634:-837.782,-377.771,-328.703,-460.046,0,-420.912	1/2:158:0,58,100:0:0:58,100:1949,3572:-448.154,-291.465,-274.006,-156.917,0,-126.814	1/1:209:0,209,0:0:0:209,0:7186,0:-645.1,-62.9153,0,-645.1,-62.9153,-645.1	1/1:87:0,87,0:0:0:87,0:3011,0:-269.946,-26.1896,0,-269.946,-26.1896,-269.946	1/2:140:0,126,13:0:0:126,13:4286,468:-383.795,-38.2885,-0.358756,-345.606,0,-341.693	1/1:83:0,83,0:0:0:83,0:2873,0:-257.401,-24.9855,0,-257.401,-24.9855,-257.401	1/1:416:0,415,0:0:0:415,0:14406,0:-1293.27,-124.927,0,-1293.27,-124.927,-1293.27	1/1:199:0,199,0:0:0:199,0:6818,0:-610.214,-59.905,0,-610.214,-59.905,-610.214	1/1:37:0,37,0:0:0:37,0:1278,0:-114.823,-11.1381,0,-114.823,-11.1381,-114.823	1/1:274:0,273,0:0:0:273,0:9455,0:-848.356,-82.1812,0,-848.356,-82.1812,-848.356	1/1:336:0,335,0:0:0:335,0:11573,0:-1035.11,-100.845,0,-1035.11,-100.845,-1035.11	1/2:218:0,119,95:0:0:119,95:4031,3408:-603.211,-278.004,-242.181,-325.225,0,-296.627	1/1:5:0,5,0:0:0:5,0:171,0:-15.6676,-1.50515,0,-15.6676,-1.50515,-15.6676	1/1:6:0,6,0:0:0:6,0:209,0:-19.0221,-1.80618,0,-19.0221,-1.80618,-19.0221	1/1:11:0,11,0:0:0:11,0:384,0:-34.6864,-3.31133,0,-34.6864,-3.31133,-34.6864	1/1:4:0,4,0:0:0:4,0:137,0:-12.6041,-1.20412,0,-12.6041,-1.20412,-12.6041	1/2:3:0,2,1:0:0:2,1:64,36:-8.34429,-3.29724,-2.69518,-5.39209,0,-5.09106	1/1:194:0,194,0:0:0:194,0:6665,0:-598.481,-58.3998,0,-598.481,-58.3998,-598.481	1/2:367:0,176,189:0:0:176,189:5978,6729:-1031.06,-548.488,-495.507,-482.618,0,-425.723	1/2:56:0,21,35:0:0:21,35:715,1244:-159.395,-101.729,-95.407,-58.011,0,-47.4749	1/1:5:0,5,0:0:0:5,0:164,0:-15.0438,-1.50515,0,-15.0438,-1.50515,-15.0438	1/1:350:0,349,0:0:0:349,0:11939,0:-1068.75,-105.059,0,-1068.75,-105.059,-1068.75	1/1:28:0,28,0:0:0:28,0:960,0:-86.4099,-8.42884,0,-86.4099,-8.42884,-86.4099	1/2:220:0,113,107:0:0:113,107:3888,3802:-623.922,-310.167,-276.15,-314.104,0,-281.894	1/2:63:0,21,41:0:0:21,41:718,1454:-176.581,-118.453,-112.131,-58.1155,0,-45.7733	1/2:67:0,34,32:0:0:34,32:1145,1144:-186.004,-93.4369,-83.2019,-92.7124,0,-83.0794	1/1:98:0,98,0:0:0:98,0:3371,0:-302.952,-29.5009,0,-302.952,-29.5009,-302.952	1/2:153:0,92,61:0:0:92,61:3103,2170:-426.739,-177.143,-149.449,-249.884,0,-231.521	1/1:256:0,256,0:0:0:256,0:8797,0:-787.959,-77.0637,0,-787.959,-77.0637,-787.959	1/1:124:0,124,0:0:0:124,0:4336,0:-389.13,-37.3277,0,-389.13,-37.3277,-389.13	1/1:216:0,216,0:0:0:216,0:7525,0:-675.598,-65.0225,0,-675.598,-65.0225,-675.598	1/1:170:0,168,0:0:0:168,0:5793,0:-519.405,-50.573,0,-519.405,-50.573,-519.405	1/1:12:0,12,0:0:0:12,0:417,0:-37.5578,-3.61236,0,-37.5578,-3.61236,-37.5578	1/2:255:0,128,126:0:0:128,126:4479,4505:-728.429,-367.349,-328.817,-361.094,0,-323.164	1/1:61:0,61,0:0:0:61,0:2088,0:-187.926,-18.3628,0,-187.926,-18.3628,-187.926	1/1:13:0,13,0:0:0:13,0:453,0:-40.6023,-3.91339,0,-40.6023,-3.91339,-40.6023	1/1:144:0,142,0:0:0:142,0:4843,0:-433.802,-42.7463,0,-433.802,-42.7463,-433.802	1/2:66:0,34,32:0:0:34,32:1160,1125:-185.466,-91.9231,-81.688,-93.8881,0,-84.2552	1/2:8:0,3,5:0:0:3,5:108,180:-23.8137,-15.0469,-14.1438,-9.12554,0,-7.62039	1/1:6:0,6,0:0:0:6,0:214,0:-19.5814,-1.80618,0,-19.5814,-1.80618,-19.5814	1/1:118:0,116,0:0:0:116,0:3974,0:-355.381,-34.9195,0,-355.381,-34.9195,-355.381	1/2:139:0,67,71:0:0:67,71:2325,2541:-395.072,-207.216,-187.047,-187.857,0,-166.484	1/1:6:0,6,0:0:0:6,0:206,0:-18.7873,-1.80618,0,-18.7873,-1.80618,-18.7873	1/1:310:0,307,0:0:0:307,0:10640,0:-954.37,-92.4162,0,-954.37,-92.4162,-954.37	1/1:258:0,257,0:0:0:257,0:8903,0:-798.26,-77.3647,0,-798.26,-77.3647,-798.26	1/2:104:0,90,14:0:0:90,14:3085,492:-289.417,-40.3979,-13.3052,-249.369,0,-245.155	1/1:115:0,114,0:0:0:114,0:3875,0:-347.354,-34.3174,0,-347.354,-34.3174,-347.354	1/2:245:0,135,110:0:0:135,110:4584,3893:-687.424,-317.448,-276.809,-370.322,0,-337.209	1/1:118:0,115,3:0:0:115,3:3972,99:-356.504,-34.6185,0,-348.501,-26.3251,-347.598	1/2:18:0,8,10:0:0:8,10:270,360:-51.5029,-29.734,-27.3258,-22.1155,0,-19.1052	1/1:100:0,99,0:0:0:99,0:3357,0:-298.969,-29.802,0,-298.969,-29.802,-298.969	1/2:132:0,57,73:0:0:57,73:1936,2582:-366.435,-210.272,-193.113,-156.136,0,-134.16	1/1:28:0,28,0:0:0:28,0:981,0:-88.1645,-8.42884,0,-88.1645,-8.42884,-88.1645	1/1:154:0,152,0:0:0:152,0:5173,0:-462.168,-45.7566,0,-462.168,-45.7566,-462.168	1/1:72:0,71,0:0:0:71,0:2468,0:-219.904,-21.3731,0,-219.904,-21.3731,-219.904	1/1:169:2,166,0:2:69:166,0:5677,0:-502.241,-44.4385,0,-502.843,-49.971,-508.449	1/1:219:0,218,0:0:0:218,0:7435,0:-667.038,-65.6245,0,-667.038,-65.6245,-667.038	1/2:180:2,114,63:2:70:114,63:3918,2256:-492.419,-178.312,-149.689,-309.034,0,-295.765	1/1:166:0,166,0:0:0:166,0:5712,0:-510.536,-49.971,0,-510.536,-49.971,-510.536	1/1:8:0,8,0:0:0:8,0:280,0:-25.3816,-2.40824,0,-25.3816,-2.40824,-25.3816	1/1:156:0,154,0:0:0:154,0:5277,0:-472.663,-46.3586,0,-472.663,-46.3586,-472.663	1/2:112:0,47,64:0:0:47,64:1624,2278:-315.776,-185.676,-171.528,-130.108,0,-110.842	1/2:200:0,84,115:0:0:84,115:2936,4118:-573.858,-335.905,-310.618,-238.025,0,-203.407	1/2:111:0,57,54:0:0:57,54:1977,1940:-318.787,-158.621,-141.462,-160.519,0,-144.264	1/1:75:0,74,0:0:0:74,0:2565,0:-229.978,-22.2762,0,-229.978,-22.2762,-229.978	1/2:82:0,34,48:0:0:34,48:1174,1696:-233.221,-138.474,-128.239,-95.0939,0,-80.6445	1/2:148:0,71,77:0:0:71,77:2392,2764:-418.842,-225.822,-204.449,-193.367,0,-170.187	1/1:36:0,36,0:0:0:36,0:1249,0:-111.811,-10.8371,0,-111.811,-10.8371,-111.811	1/1:86:0,86,0:0:0:86,0:2901,0:-259.179,-25.8886,0,-259.179,-25.8886,-259.179	1/1:75:0,75,0:0:0:75,0:2545,0:-227.63,-22.5773,0,-227.63,-22.5773,-227.63	1/1:41:0,41,0:0:0:41,0:1442,0:-129.053,-12.3422,0,-129.053,-12.3422,-129.053	1/2:95:0,48,47:0:0:48,47:1629,1688:-269.265,-138.059,-123.609,-131.555,0,-117.406	1/2:64:0,29,34:0:0:29,34:1016,1208:-180.566,-98.4128,-89.683,-82.1453,0,-71.9102	1/1:130:0,130,0:0:0:130,0:4490,0:-402.95,-39.1339,0,-402.95,-39.1339,-402.95	1/1:88:0,87,1:0:0:87,1:2986,36:-267.634,-26.1896,0,-264.696,-22.8924,-264.395
chr02	1074385	.	TGGTG	CGGGG,CGGTG	234853	PASS	AB=0.452,0.54175;ABP=83.0595,63.5705;AC=160,28;AF=0.851064,0.148936;AN=188;AO=8753,2199;CIGAR=1X2M1X1M,1X4M;DP=11037;DPB=11034.8;DPRA=0,1.569;EPP=19009.9,4743.4;EPPR=11.6962;GTI=4;LEN=5,1;MEANALT=2.21277,2.88636;MQM=54.3342,59.6421;MQMR=60;NS=94;NUMALT=2;ODDS=2.04144;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=307953,78360;QR=144;RO=4;RPL=0,4;RPP=19009.9,4743.4;RPPR=11.6962;RPR=8753,2195;RUN=1,1;SAF=8753,2199;SAP=19009.9,4778.08;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55,0:0:0:55,0:1943,0:-174.04,-16.5567,0,-174.04,-16.5567,-174.04	1/1:68:0,64,0:0:0:64,0:2247,0:-201.619,-19.2659,0,-201.619,-19.2659,-201.619	1/1:175:0,173,0:0:0:173,0:6117,0:-547.931,-52.0782,0,-547.931,-52.0782,-547.931	1/2:275:0,84,187:0:0:84,187:2962,6678:-785.216,-544.406,-519.119,-240.807,0,-184.515	1/1:56:0,52,3:0:0:52,3:1849,108:-165.949,-15.6536,0,-157.136,-6.83895,-156.233	1/1:46:0,46,0:0:0:46,0:1632,0:-146.819,-13.8474,0,-146.819,-13.8474,-146.819	1/1:131:0,129,1:0:0:129,1:4564,36:-410.005,-38.8329,0,-407.067,-35.8935,-406.766	1/1:139:0,139,0:0:0:139,0:4859,0:-436.182,-41.8432,0,-436.182,-41.8432,-436.182	1/1:120:0,120,0:0:0:120,0:4258,0:-381.95,-36.1236,0,-381.95,-36.1236,-381.95	1/1:75:0,75,0:0:0:75,0:2626,0:-235.952,-22.5773,0,-235.952,-22.5773,-235.952	1/1:73:0,72,1:0:0:72,1:2550,36:-229.195,-21.6742,0,-226.258,-18.3769,-225.957	1/1:102:0,101,0:0:0:101,0:3560,0:-318.907,-30.404,0,-318.907,-30.404,-318.907	1/1:61:0,61,0:0:0:61,0:2140,0:-192.362,-18.3628,0,-192.362,-18.3628,-192.362	1/2:102:0,55,47:0:0:55,47:1928,1664:-292.251,-135.883,-119.326,-156.72,0,-142.571	1/1:74:0,74,0:0:0:74,0:2598,0:-233.828,-22.2762,0,-233.828,-22.2762,-233.828	1/2:90:0,39,51:0:0:39,51:1393,1815:-261.657,-148.274,-136.533,-113.74,0,-98.387	1/1:47:0,47,0:0:0:47,0:1641,0:-147.029,-14.1484,0,-147.029,-14.1484,-147.029	1/1:40:0,40,0:0:0:40,0:1412,0:-126.73,-12.0412,0,-126.73,-12.0412,-126.73	1/1:51:0,51,0:0:0:51,0:1773,0:-159.018,-15.3525,0,-159.018,-15.3525,-159.018	1/2:283:0,137,144:0:0:137,144:4798,5142:-809.06,-419.249,-378.008,-389.873,0,-346.525	1/2:304:0,148,156:0:0:148,156:5193,5551:-874.255,-452.726,-408.174,-421.881,0,-374.92	1/1:181:0,179,0:0:0:179,0:6330,0:-568.774,-53.8844,0,-568.774,-53.8844,-568.774	1/1:360:0,358,1:0:0:358,1:12554,36:-1127.34,-107.769,0,-1124.41,-104.831,-1124.11	1/1:86:0,79,6:0:0:79,6:2780,216:-249.484,-23.7814,0,-231.859,-6.14454,-230.053	1/1:111:0,111,0:0:0:111,0:3880,0:-348.517,-33.4143,0,-348.517,-33.4143,-348.517	1/1:284:0,282,0:0:0:282,0:9958,0:-894.987,-84.8905,0,-894.987,-84.8905,-894.987	1/1:236:0,231,1:0:0:231,1:8141,36:-730.72,-69.5379,0,-727.788,-66.6017,-727.487	1/1:33:0,32,1:0:0:32,1:1131,36:-101.614,-9.63296,0,-98.6767,-6.33572,-98.3757	1/1:268:0,266,1:0:0:266,1:9428,36:-847.211,-80.074,0,-844.274,-77.1365,-843.973	1/1:189:0,186,0:0:0:186,0:6478,0:-581.852,-55.9916,0,-581.852,-55.9916,-581.852	1/2:278:0,140,136:0:0:140,136:4906,4819:-791.035,-392.278,-350.134,-398.759,0,-357.819	1/1:4:0,4,0:0:0:4,0:122,0:-11.2717,-1.20412,0,-11.2717,-1.20412,-11.2717	1/1:30:0,30,0:0:0:30,0:1050,0:-94.6857,-9.0309,0,-94.6857,-9.0309,-94.6857	1/1:15:0,15,0:0:0:15,0:529,0:-47.7865,-4.51545,0,-47.7865,-4.51545,-47.7865	1/1:23:0,23,0:0:0:23,0:813,0:-73.3195,-6.92369,0,-73.3195,-6.92369,-73.3195	1/2:38:0,26,12:0:0:26,12:889,432:-107.278,-35.6021,-27.7753,-72.0291,0,-68.4168	1/1:182:0,179,0:0:0:179,0:6325,0:-568.721,-53.8844,0,-568.721,-53.8844,-568.721	1/2:207:0,84,122:0:0:84,122:2943,4352:-593.574,-354.714,-329.428,-238.852,0,-202.127	1/2:66:1,26,39:1:36:26,39:908,1383:-183.099,-109.728,-104.839,-70.7248,0,-61.9225	1/1:2:0,2,0:0:0:2,0:71,0:-6.73335,-0.60206,0,-6.73335,-0.60206,-6.73335	1/1:145:0,144,0:0:0:144,0:5065,0:-454.578,-43.3483,0,-454.578,-43.3483,-454.578	1/1:52:0,51,0:0:0:51,0:1818,0:-163.349,-15.3525,0,-163.349,-15.3525,-163.349	1/2:188:0,80,107:0:0:80,107:2804,3806:-537.482,-310.143,-286.061,-227.332,0,-195.122	1/2:64:0,31,33:0:0:31,33:1088,1188:-185.77,-97.2946,-87.9627,-88.8309,0,-78.8969	1/2:47:0,21,26:0:0:21,26:736,919:-134.945,-75.1938,-68.8721,-60.1024,0,-52.2756	1/1:100:0,98,1:0:0:98,1:3436,32:-308.797,-29.5009,0,-306.219,-26.9394,-305.918	1/2:130:0,54,76:0:0:54,76:1922,2705:-376.551,-220.54,-204.284,-156.366,0,-133.488	1/1:147:0,145,0:0:0:145,0:5093,0:-457.167,-43.6494,0,-457.167,-43.6494,-457.167	1/1:107:0,105,0:0:0:105,0:3706,0:-332.967,-31.6082,0,-332.967,-31.6082,-332.967	1/1:154:0,152,0:0:0:152,0:5354,0:-480.92,-45.7566,0,-480.92,-45.7566,-480.92	1/1:159:0,158,0:0:0:158,0:5532,0:-497.205,-47.5627,0,-497.205,-47.5627,-497.205	1/1:14:0,14,0:0:0:14,0:488,0:-44.2214,-4.21442,0,-44.2214,-4.21442,-44.2214	1/2:159:0,79,79:0:0:79,79:2772,2826:-455.481,-230.493,-206.711,-225.041,0,-201.259	1/1:122:0,122,0:0:0:122,0:4249,0:-382.291,-36.7257,0,-382.291,-36.7257,-382.291	1/1:11:0,11,0:0:0:11,0:396,0:-35.8923,-3.31133,0,-35.8923,-3.31133,-35.8923	1/1:101:0,101,0:0:0:101,0:3556,0:-319.443,-30.404,0,-319.443,-30.404,-319.443	1/2:145:0,68,76:0: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chr02	1074406	.	A	G	187184	PASS	AB=0.445407;ABP=107.568;AC=160;AF=0.851064;AN=188;AO=8721;CIGAR=1X;DP=10996;DPB=10996;DPRA=0;EPP=18931.7;EPPR=4912.72;GTI=5;LEN=1;MEANALT=1.06383;MQM=54.2915;MQMR=59.632;NS=94;NUMALT=1;ODDS=1.04228;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=311056;QR=81066;RO=2269;RPL=8717;RPP=18905.7;RPPR=4912.72;RPR=4;RUN=1;SAF=8718;SAP=18914.4;SAR=3;SRF=2269;SRP=4930.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1961:-175.561,-16.5567,0	1/1:68:0,68:0:0:68:2432:-218.399,-20.47,0	1/1:173:0,173:0:0:173:6203:-555.472,-52.0782,0	0/1:279:193,86:193:6906:86:3092:-193.917,0,-537.571	1/1:56:3,53:3:108:53:1900:-160.781,-6.78251,0	1/1:46:0,46:0:0:46:1648:-148.243,-13.8474,0	1/1:130:2,128:2:72:128:4580:-404.905,-32.2972,0	1/1:133:0,133:0:0:133:4769:-428.101,-40.037,0	1/1:120:0,120:0:0:120:4307:-386.294,-36.1236,0	1/1:75:0,75:0:0:75:2640:-237.063,-22.5773,0	1/1:71:1,70:1:36:70:2513:-222.607,-17.7749,0	1/1:103:0,103:0:0:103:3654:-327.623,-31.0061,0	1/1:60:0,60:0:0:60:2143:-192.636,-18.0618,0	0/1:103:47,55:47:1684:55:1964:-145.413,0,-120.773	1/1:72:0,72:0:0:72:2572:-231.392,-21.6742,0	0/1:91:52,39:52:1860:39:1396:-98.3535,0,-140.281	1/1:47:0,47:0:0:47:1672:-149.553,-14.1484,0	1/1:40:0,40:0:0:40:1436:-128.604,-12.0412,0	1/1:51:0,51:0:0:51:1828:-163.821,-15.3525,0	0/1:287:151,136:151:5413:136:4841:-348.861,0,-400.885	0/1:305:160,145:160:5737:145:5152:-370.857,0,-424.473	1/1:179:0,179:0:0:179:6404:-575.075,-53.8844,0	1/1:353:0,353:0:0:353:12598:-1131.33,-106.264,0	1/1:84:6,78:6:216:78:2785:-230.351,-5.49601,0	1/1:112:0,112:0:0:112:3959:-355.676,-33.7154,0	1/1:280:0,280:0:0:280:9956:-895.228,-84.2884,0	1/1:235:0,235:0:0:235:8408:-754.538,-70.7421,0	1/1:32:1,31:1:36:31:1108:-96.3046,-6.03469,0	1/1:265:1,264:1:36:264:9418:-843.163,-76.1747,0	1/1:184:2,180:2:72:180:6428:-570.024,-48.3051,0	0/1:288:149,139:149:5288:139:4965:-359.601,0,-389.274	1/1:4:0,4:0:0:4:144:-13.2995,-1.20412,0	1/1:29:0,29:0:0:29:1044:-94.1411,-8.72987,0	1/1:15:0,15:0:0:15:532:-47.9171,-4.51545,0	1/1:23:0,23:0:0:23:828:-74.656,-6.92369,0	0/1:41:15,26:15:525:26:932:-70.6957,0,-35.2324	1/1:183:0,183:0:0:183:6510:-584.596,-55.0885,0	0/1:206:122,83:122:4377:83:2930:-201.365,0,-331.969	0/1:64:38,26:38:1368:26:936:-65.0809,0,-104.151	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	1/1:145:0,145:0:0:145:5170:-464.28,-43.6494,0	1/1:51:0,51:0:0:51:1824:-163.693,-15.3525,0	0/1:190:111,79:111:3947:79:2836:-197.421,0,-298.066	0/1:65:33,32:33:1184:32:1122:-81.6418,0,-87.3014	0/1:50:29,21:29:1044:21:744:-52.0932,0,-79.2163	1/1:99:1,98:1:36:98:3490:-310.258,-26.2037,0	0/1:130:77,53:77:2738:53:1892:-130.702,0,-207.032	1/1:142:0,142:0:0:142:5087:-456.706,-42.7463,0	1/1:107:0,107:0:0:107:3829:-344.268,-32.2102,0	1/1:151:0,151:0:0:151:5402:-485.386,-45.4555,0	1/1:157:0,157:0:0:157:5596:-503.216,-47.2617,0	1/1:13:0,13:0:0:13:464:-42.0683,-3.91339,0	0/1:157:79,78:79:2806:78:2777:-202.3,0,-205.403	1/1:120:0,120:0:0:120:4242:-381.614,-36.1236,0	1/1:11:0,11:0:0:11:381:-34.5381,-3.31133,0	1/1:100:0,100:0:0:100:3570:-320.788,-30.103,0	0/1:149:79,70:79:2795:70:2458:-176.228,0,-206.926	0/1:21:16,5:16:576:5:180:-10.2258,0,-45.8524	1/1:16:0,16:0:0:16:561:-50.8038,-4.81648,0	1/1:105:0,105:0:0:105:3763:-337.47,-31.6082,0	0/1:132:72,60:72:2573:60:2160:-154.774,0,-192.056	1/1:8:0,8:0:0:8:288:-26.0914,-2.40824,0	1/1:138:2,136:2:72:136:4839:-428.482,-34.7054,0	1/1:221:0,221:0:0:221:7906:-709.499,-66.5276,0	1/1:82:1,81:1:36:81:2888:-256.048,-21.0862,0	1/1:76:0,76:0:0:76:2693:-242.187,-22.8783,0	0/1:343:201,142:201:7153:142:5070:-352.502,0,-540.38	1/1:282:5,277:5:176:277:9871:-869.203,-68.7054,0	0/1:47:25,22:25:881:22:764:-54.5914,0,-65.4528	1/1:75:1,74:1:36:74:2656:-234.73,-18.979,0	0/1:47:29,18:29:1044:18:644:-44.0156,0,-80.1264	1/1:43:0,43:0:0:43:1544:-139.065,-12.9443,0	1/1:130:0,130:0:0:130:4604:-412.103,-39.1339,0	1/1:113:0,113:0:0:113:4003:-358.567,-34.0164,0	1/1:245:1,244:1:36:244:8708:-777.67,-70.1541,0	1/1:201:0,201:0:0:201:7203:-647.429,-60.507,0	0/1:170:81,89:81:2912:89:3200:-235.6,0,-211.094	1/1:123:0,122:0:0:122:4350:-388.304,-36.7257,0	1/1:17:0,17:0:0:17:597:-53.9247,-5.11751,0	1/1:129:1,128:1:36:128:4549:-403.731,-35.2346,0	0/1:132:80,52:80:2846:52:1838:-124.349,0,-216.628	0/1:241:149,92:149:5329:92:3282:-222.226,0,-406.139	0/1:79:38,41:38:1360:41:1464:-108.154,0,-98.2978	1/1:58:0,57:0:0:57:2029:-182.277,-17.1587,0	0/1:55:22,33:22:792:33:1165:-88.3582,0,-55.049	0/1:106:40,66:40:1428:66:2361:-180.513,0,-96.906	1/1:26:0,26:0:0:26:928:-83.1188,-7.82678,0	1/1:87:0,87:0:0:87:3103:-278.392,-26.1896,0	1/1:88:0,88:0:0:88:3145:-281.968,-26.4906,0	1/1:57:0,57:0:0:57:2048:-184.131,-17.1587,0	0/1:161:88,73:88:3156:73:2612:-186.39,0,-235.77	0/1:100:62,38:62:2232:38:1355:-91.8687,0,-171.036	1/1:166:0,166:0:0:166:5884:-529.059,-49.971,0	1/1:95:3,92:3:108:92:3257:-282.673,-18.5227,0
chr02	1074422	.	T	A	39735.9	PASS	AB=0.557635;ABP=118.651;AC=28;AF=0.148936;AN=188;AO=2263;CIGAR=1X;DP=10779;DPB=10779;DPRA=1.45427;EPP=4899.7;EPPR=18482.2;GTI=5;LEN=1;MEANALT=1.04651;MQM=59.6434;MQMR=54.3599;NS=94;NUMALT=1;ODDS=1.49522;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80773;QR=300256;RO=8514;RPL=2244;RPP=4753.41;RPPR=17649.5;RPR=19;RUN=1;SAF=2246;SAP=4770.5;SAR=17;SRF=8417;SRP=17658;SRR=97;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1890:0:0:0,-16.5566,-169.466	0/0:65:65,0:65:2279:0:0:0,-19.5669,-204.732	0/0:163:163,0:163:5757:0:0:0,-49.0679,-515.836	0/1:274:83,191:83:2920:191:6835:-532.69,0,-180.179	0/0:72:69,3:69:2463:3:104:0,-11.9714,-211.819	0/0:54:54,0:54:1908:0:0:0,-16.2556,-171.675	0/0:125:124,1:124:4376:1:32:0,-34.4294,-390.23	0/0:125:125,0:125:4413:0:0:0,-37.6287,-396.238	0/0:112:112,0:112:3941:0:0:0,-33.7154,-353.626	0/0:69:69,0:69:2414:0:0:0,-20.7711,-216.823	0/0:72:71,1:71:2511:1:36:0,-18.0759,-222.446	0/0:99:99,0:99:3480:0:0:0,-29.802,-312.104	0/0:57:57,0:57:2001:0:0:0,-17.1587,-179.891	0/1:105:55,50:55:1932:50:1783:-129.127,0,-142.074	0/0:73:73,0:73:2552:0:0:0,-21.9752,-229.602	0/1:86:37,49:37:1319:49:1764:-133.151,0,-92.9411	0/0:46:46,0:46:1610:0:0:0,-13.8474,-143.805	0/0:39:39,0:39:1358:0:0:0,-11.7402,-121.695	0/0:49:49,0:49:1712:0:0:0,-14.7505,-153.437	0/1:280:133,147:133:4690:147:5247:-387.979,0,-337.431	0/1:295:139,156:139:4900:156:5583:-413.649,0,-351.264	0/0:185:185,0:185:6554:0:0:0,-55.6905,-587.169	0/0:339:339,0:339:11957:0:0:0,-102.049,-1073.89	0/0:81:75,6:75:2654:6:212:0,-4.95863,-219.035	0/0:116:116,0:116:4082:0:0:0,-34.9195,-365.903	0/0:274:274,0:274:9641:0:0:0,-82.4822,-866.448	0/0:223:223,0:223:7874:0:0:0,-67.1297,-706.946	0/0:33:32,1:32:1127:1:36:0,-6.33571,-98.016	0/0:263:262,1:262:9231:1:28:0,-76.3712,-826.666	0/0:176:175,1:175:6135:1:36:0,-49.3881,-547.136	0/1:280:132,147:132:4625:147:5256:-388.175,0,-331.534	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0656	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.2097	0/0:15:15,0:15:524:0:0:0,-4.51545,-47.3102	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.2323	0/1:38:23,15:23:807:15:527:-36.3173,0,-60.8544	0/0:180:180,0:180:6363:0:0:0,-54.1854,-572.323	0/1:214:82,132:82:2880:132:4696:-358.321,0,-194.376	0/1:63:24,39:24:830:39:1377:-105.258,0,-55.8957	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/0:137:137,0:137:4832:0:0:0,-41.2411,-433.957	0/0:51:51,0:51:1832:0:0:0,-15.3525,-164.407	0/1:183:74,109:74:2619:109:3912:-296.975,0,-180.134	0/1:66:32,34:32:1135:34:1207:-89.0679,0,-82.5168	0/1:48:19,29:19:680:29:1044:-79.8183,0,-46.9419	0/0:97:96,1:96:3416:1:36:0,-25.6016,-303.572	0/1:134:57,76:57:2039:76:2716:-204.28,0,-142.69	0/0:145:145,0:145:5070:0:0:0,-43.6493,-455.413	0/0:105:105,0:105:3728:0:0:0,-31.6081,-335.076	0/0:146:146,0:146:5154:0:0:0,-43.9504,-463.26	0/0:154:154,0:154:5462:0:0:0,-46.3586,-491.164	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0683	0/1:155:75,80:75:2676:80:2860:-210.926,0,-193.844	0/0:111:111,0:111:3921:0:0:0,-33.4143,-352.83	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5345	0/0:96:96,0:96:3385:0:0:0,-28.8989,-304.035	0/1:147:70,77:70:2447:77:2745:-203.033,0,-175.872	0/1:21:5,16:5:180:16:576:-45.8524,0,-10.2258	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7446	0/0:100:100,0:100:3522:0:0:0,-30.103,-315.768	0/1:130:59,71:59:2075:71:2535:-189.259,0,-147.751	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.3662	0/0:134:132,2:132:4691:2:72:0,-33.5013,-415.178	0/0:214:214,0:214:7533:0:0:0,-64.4204,-676.618	0/0:78:77,1:77:2740:1:36:0,-19.8821,-242.766	0/0:73:73,0:73:2561:0:0:0,-21.9752,-230.329	0/1:338:137,201:137:4847:201:7126:-539.585,0,-334.004	0/0:270:266,4:266:9349:4:144:0,-67.9645,-825.812	0/1:47:21,26:21:734:26:923:-69.2337,0,-51.8527	0/0:74:73,1:73:2590:1:36:0,-18.6779,-228.983	0/1:46:17,29:17:596:29:1040:-80.067,0,-39.9963	0/0:36:36,0:36:1275:0:0:0,-10.8371,-114.887	0/0:127:127,0:127:4477:0:0:0,-38.2308,-400.783	0/0:109:109,0:109:3877:0:0:0,-32.8123,-347.281	0/0:232:231,1:231:8035:1:36:0,-66.2407,-717.768	0/0:196:196,0:196:6951:0:0:0,-59.0019,-624.456	0/1:187:100,87:100:3503:87:3089:-221.867,0,-258.049	0/0:123:123,0:123:4327:0:0:0,-37.0267,-387.08	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.4567	0/0:129:128,1:128:4549:1:36:0,-35.2346,-403.373	0/1:129:53,76:53:1870:76:2719:-206.11,0,-127.982	0/1:242:94,148:94:3335:148:5287:-403.075,0,-226.709	0/1:81:43,38:43:1505:38:1355:-97.4177,0,-111.24	0/0:58:58,0:58:2056:0:0:0,-17.4597,-184.924	0/1:54:32,22:32:1135:22:792:-55.3501,0,-85.9644	0/1:106:65,41:65:2293:41:1472:-100.865,0,-174.484	0/0:22:22,0:22:762:0:0:0,-6.62266,-68.7188	0/0:84:84,0:84:2948:0:0:0,-25.2865,-264.5	0/0:88:88,0:88:3134:0:0:0,-26.4906,-280.996	0/0:55:55,0:55:1951:0:0:0,-16.5566,-175.467	0/1:158:70,88:70:2446:88:3143:-235.505,0,-172.404	0/1:101:40,61:40:1404:61:2176:-165.699,0,-96.0431	0/0:154:154,0:154:5450:0:0:0,-46.3586,-489.957	0/0:93:90,3:90:3191:3:108:0,-17.9206,-276.668
chr02	1221110	.	GAATG	GAATA	146441	PASS	AB=0.492454;ABP=4.25558;AC=162;AF=0.861702;AN=188;AO=6692;CIGAR=4M1X;DP=7997;DPB=7997.2;DPRA=0;EPP=14517.1;EPPR=2784.67;GTI=1;LEN=1;MEANALT=1.21277;MQM=59.9892;MQMR=59.9906;NS=94;NUMALT=1;ODDS=0.499721;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238801;QR=44874;RO=1281;RPL=6692;RPP=14534.5;RPPR=2784.67;RPR=0;RUN=1;SAF=6690;SAP=14517.1;SAR=2;SRF=1281;SRP=2784.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:119:0,119:0:0:119:4252:-382.86,-35.8226,0	1/1:66:0,66:0:0:66:2329:-209.869,-19.868,0	0/1:98:40,58:40:1359:58:2080:-157.969,0,-93.1016	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:51:0,51:0:0:51:1803:-162.551,-15.3525,0	1/1:73:0,73:0:0:73:2600:-234.249,-21.9752,0	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	1/1:91:0,91:0:0:91:3239:-291.732,-27.3937,0	1/1:116:0,116:0:0:116:4147:-373.413,-34.9195,0	1/1:81:0,80:0:0:80:2858:-257.176,-24.0824,0	1/1:86:0,86:0:0:86:3068:-276.35,-25.8886,0	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	0/1:99:52,47:52:1833:47:1675:-121.235,0,-135.448	1/1:67:0,67:0:0:67:2387:-215.087,-20.169,0	0/1:56:25,31:25:866:31:1108:-83.1733,0,-61.396	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:69:0,69:0:0:69:2460:-221.655,-20.7711,0	1/1:42:0,42:0:0:42:1503:-135.564,-12.6433,0	0/1:172:85,86:85:2968:86:3084:-226.001,0,-215.57	0/1:125:81,44:81:2861:44:1576:-104.503,0,-220.1	1/1:119:0,119:0:0:119:4223:-380.222,-35.8226,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:135:5,130:5:177:130:4656:-402.889,-24.3621,0	1/1:102:0,102:0:0:102:3619:-325.918,-30.7051,0	1/1:279:0,278:0:0:278:9876:-888.471,-83.6863,0	1/1:211:0,211:0:0:211:7563:-680.708,-63.5173,0	1/1:36:1,35:1:36:35:1248:-109.027,-7.23881,0	1/1:96:0,96:0:0:96:3448:-310.532,-28.8989,0	1/1:105:0,105:0:0:105:3757:-338.328,-31.6082,0	0/1:70:33,37:33:1165:37:1324:-98.39,0,-84.0851	0/1:11:3,8:3:107:8:288:-22.9561,0,-6.67084	1/1:15:0,15:0:0:15:540:-48.8802,-4.51545,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:271:2,268:2:64:268:9596:-857.535,-75.4794,0	0/1:180:80,98:80:2839:98:3516:-262.697,0,-201.827	0/1:64:32,32:32:1129:32:1148:-84.3639,0,-82.6526	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:92:0,91:0:0:91:3232:-290.89,-27.3937,0	1/1:55:0,55:0:0:55:1940:-174.874,-16.5567,0	0/1:105:53,52:53:1853:52:1855:-135.621,0,-135.441	0/1:78:42,36:42:1457:36:1296:-93.4636,0,-107.943	0/1:76:38,38:38:1325:38:1356:-99.3166,0,-96.5206	1/1:130:0,129:0:0:129:4605:-414.254,-38.8329,0	0/1:92:31,60:31:1093:60:2140:-165.086,0,-70.927	1/1:92:0,92:0:0:92:3253:-292.99,-27.6948,0	1/1:100:0,100:0:0:100:3550:-319.71,-30.103,0	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:159:0,159:0:0:159:5649:-508.534,-47.8638,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:100:61,39:61:2157:39:1396:-95.8361,0,-164.295	1/1:32:0,32:0:0:32:1148:-103.629,-9.63296,0	1/1:27:0,27:0:0:27:933:-84.2778,-8.12781,0	1/1:98:0,98:0:0:98:3483:-313.683,-29.5009,0	0/1:40:14,26:14:486:26:936:-72.5183,0,-32.0274	0/1:8:4,4:4:142:4:129:-9.51942,0,-10.721	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:63:0,61:0:0:61:2184:-196.481,-18.3628,0	0/1:143:72,71:72:2539:71:2535:-185.354,0,-185.715	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:117:0,117:0:0:117:4171:-375.574,-35.2205,0	1/1:187:0,187:0:0:187:6628:-596.605,-56.2926,0	1/1:38:3,35:3:106:35:1256:-103.456,-1.55004,0	1/1:47:0,47:0:0:47:1659:-149.597,-14.1484,0	0/1:115:62,52:62:2147:52:1864:-133.441,0,-158.898	1/1:72:0,67:0:0:67:2395:-215.458,-20.169,0	1/1:29:1,28:1:36:28:1004:-87.0776,-5.1316,0	1/1:79:0,79:0:0:79:2789:-251.251,-23.7814,0	0/1:86:38,47:38:1336:47:1679:-125.449,0,-94.5923	1/1:27:0,27:0:0:27:959:-86.625,-8.12781,0	1/1:127:0,127:0:0:127:4523:-407.239,-38.2308,0	1/1:88:0,88:0:0:88:3132:-282.108,-26.4906,0	1/1:156:0,155:0:0:155:5529:-497.376,-46.6597,0	1/1:120:0,120:0:0:120:4308:-387.895,-36.1236,0	1/1:92:0,92:0:0:92:3272:-294.702,-27.6948,0	1/1:93:1,92:1:32:92:3295:-293.569,-24.7965,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:108:0,108:0:0:108:3842:-345.977,-32.5112,0	0/1:87:46,41:46:1596:41:1451:-104.696,0,-117.738	0/1:135:72,62:72:2514:62:2208:-158.288,0,-185.816	0/1:100:43,56:43:1528:56:2012:-151.28,0,-107.74	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:102:48,54:48:1671:54:1936:-143.811,0,-119.971	0/1:191:100,90:100:3542:90:3232:-233.546,0,-261.437	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	1/1:72:0,72:0:0:72:2559:-230.56,-21.6742,0	1/1:83:0,83:0:0:83:2984:-268.791,-24.9855,0	0/1:107:55,52:55:1875:52:1856:-135.11,0,-136.815	0/1:78:58,19:58:2035:19:671:-37.177,0,-159.884	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	1/1:109:0,108:0:0:108:3864:-347.675,-32.5112,0
chr02	1308267	.	A	T	47819.9	PASS	AB=0.480124;ABP=18.4614;AC=26;AF=0.138298;AN=188;AO=2182;CIGAR=1X;DP=15970;DPB=15970;DPRA=1.09497;EPP=4741.16;EPPR=29917.2;GTI=1;LEN=1;MEANALT=1.05556;MQM=52.5257;MQMR=59.7798;NS=94;NUMALT=1;ODDS=5.29315;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77489;QR=488404;RO=13780;RPL=1001;RPP=35.254;RPPR=505.663;RPR=1181;RUN=1;SAF=1001;SAP=35.254;SAR=1181;SRF=5998;SRP=504.538;SRR=7782;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:152:151,1:151:5300:1:21:0,-43.6608,-474.997	0/0:174:174,0:174:6143:0:0:0,-52.3792,-552.021	0/0:235:235,0:235:8288:0:0:0,-70.742,-745.919	0/1:383:215,168:215:7635:168:5975:-412.247,0,-571.865	0/0:155:153,2:153:5418:2:72:0,-40.3694,-481.407	0/0:97:97,0:97:3458:0:0:0,-29.1999,-311.396	0/0:163:163,0:163:5746:0:0:0,-49.0679,-517.173	0/0:298:298,0:298:10576:0:0:0,-89.7069,-951.41	0/0:251:251,0:251:8917:0:0:0,-75.5585,-802.423	0/0:169:169,0:169:6026:0:0:0,-50.8741,-542.418	0/0:85:85,0:85:3014:0:0:0,-25.5875,-271.463	0/0:208:208,0:208:7395:0:0:0,-62.6142,-665.551	0/0:191:191,0:191:6767:0:0:0,-57.4967,-609.025	0/1:106:30,76:30:1072:76:2716:-211.626,0,-64.8833	0/0:162:162,0:162:5772:0:0:0,-48.7669,-519.499	0/1:92:51,41:51:1806:41:1468:-104.182,0,-135.096	0/0:62:61,0:61:2172:0:0:0,-18.3628,-195.409	0/0:80:80,0:80:2831:0:0:0,-24.0824,-254.999	0/0:38:38,0:38:1340:0:0:0,-11.4391,-120.897	0/1:361:183,178:183:6443:178:6350:-457.09,0,-470.919	0/1:319:170,145:170:6040:145:5159:-366.565,0,-448.321	0/0:226:226,0:226:8007:0:0:0,-68.0328,-720.648	0/0:267:266,1:266:9421:1:36:0,-76.854,-844.256	0/1:82:74,8:74:2644:8:284:-1.19019,0,-213.489	0/0:212:212,0:212:7499:0:0:0,-63.8184,-674.936	0/0:368:368,0:368:13016:0:0:0,-110.779,-1171.23	0/0:503:503,0:503:17881:0:0:0,-151.418,-1608.82	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.491	0/0:468:468,0:468:16545:0:0:0,-140.882,-1488.59	0/0:312:312,0:312:11001:0:0:0,-93.9214,-989.936	0/1:194:105,89:105:3753:89:3164:-223.769,0,-279.51	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:11:5,6:5:176:6:208:-15.7472,0,-12.8737	0/0:326:326,0:326:11606:0:0:0,-98.1358,-1044.32	0/1:196:100,96:100:3556:96:3433:-248.042,0,-261.203	0/1:70:42,28:42:1496:28:996:-68.1219,0,-113.793	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:252:251,0:251:8876:0:0:0,-75.5585,-798.595	0/0:39:39,0:39:1389:0:0:0,-11.7402,-125.299	0/1:308:165,143:165:5811:143:5083:-362.757,0,-430.104	0/1:116:64,52:64:2266:52:1853:-129.386,0,-169.238	0/1:103:52,51:52:1844:51:1816:-130.795,0,-135.098	0/0:228:228,0:228:8121:0:0:0,-68.6348,-730.815	0/1:238:111,127:111:3952:127:4505:-329.668,0,-284.035	0/0:393:393,0:393:13798:0:0:0,-118.305,-1241.46	0/0:179:178,1:178:6331:1:36:0,-50.3634,-566.174	0/0:145:145,0:145:5160:0:0:0,-43.6493,-464.511	0/0:146:146,0:146:5178:0:0:0,-43.9504,-466.12	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:203:203,0:203:7238:0:0:0,-61.1091,-651.439	0/0:124:123,1:123:4368:1:36:0,-33.7294,-389.697	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:232:232,0:232:8176:0:0:0,-69.839,-735.631	0/1:100:47,53:47:1659:53:1892:-138.167,0,-119.491	0/1:6:3,3:3:108:3:104:-7.79548,0,-8.26899	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3275	0/0:179:179,0:179:6350:0:0:0,-53.8844,-571.441	0/1:123:60,62:60:2125:62:2165:-154.542,0,-154.413	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:371:371,0:371:13098:0:0:0,-111.682,-1178.64	0/0:360:359,1:359:12761:1:36:0,-104.773,-1144.38	0/0:111:102,9:102:3548:9:324:0,-4.02314,-290.063	0/0:174:174,0:174:6137:0:0:0,-52.3792,-552.313	0/1:341:178,163:178:6304:163:5746:-407.764,0,-464.711	0/0:222:221,1:221:7833:1:36:0,-63.3076,-701.389	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.554	0/0:101:101,0:101:3595:0:0:0,-30.404,-323.584	0/1:61:39,22:39:1381:22:792:-52.8762,0,-106.222	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:176:176,0:176:6239:0:0:0,-52.9813,-561.587	0/0:215:215,0:215:7668:0:0:0,-64.7214,-690.042	0/0:349:349,0:349:12363:0:0:0,-105.059,-1112.48	0/0:288:287,0:287:10204:0:0:0,-86.3956,-917.846	0/0:205:205,0:205:7230:0:0:0,-61.7111,-650.664	0/0:153:151,2:151:5365:2:72:0,-39.3154,-476.217	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:236:235,1:235:8292:1:36:0,-67.4448,-742.678	0/1:194:104,90:104:3672:90:3179:-226.631,0,-272.274	0/1:398:188,210:188:6673:210:7458:-546.209,0,-480.214	0/1:131:69,62:69:2472:62:2188:-154.726,0,-183.271	0/0:139:139,0:139:4943:0:0:0,-41.8432,-444.964	0/1:87:51,36:51:1820:36:1274:-85.562,0,-137.876	0/1:217:121,96:121:4299:96:3422:-237.195,0,-321.666	0/0:57:57,0:57:2023:0:0:0,-17.1587,-182.342	0/0:123:123,0:123:4363:0:0:0,-37.0267,-391.804	0/0:108:108,0:108:3854:0:0:0,-32.5112,-347.038	0/0:39:39,0:39:1351:0:0:0,-11.7402,-121.882	0/1:140:67,73:67:2399:73:2588:-189.822,0,-173.975	0/1:126:42,84:42:1512:84:2966:-224.179,0,-98.1464	0/0:270:270,0:270:9565:0:0:0,-81.2781,-860.648	0/0:200:200,0:200:7071:0:0:0,-60.206,-636.332
chr02	1308288	.	G	T	192351	PASS	AB=0.528755;ABP=20.3686;AC=162;AF=0.861702;AN=188;AO=8090;CIGAR=1X;DP=9236;DPB=9236;DPRA=0;EPP=14314.7;EPPR=2021.05;GTI=2;LEN=1;MEANALT=1;MQM=59.9596;MQMR=59.9983;NS=94;NUMALT=1;ODDS=1.23292;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288260;QR=40477;RO=1146;RPL=7698;RPP=14330.3;RPPR=2021.05;RPR=392;RUN=1;SAF=2;SAP=17552.9;SAR=8088;SRF=0;SRP=2491.52;SRR=1146;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:0,76:0:0:76:2680:-241.365,-22.8783,0	1/1:118:0,118:0:0:118:4185:-376.834,-35.5215,0	1/1:178:0,178:0:0:178:6348:-571.414,-53.5833,0	0/1:241:94,147:94:3314:147:5209:-396.402,0,-225.933	1/1:92:0,92:0:0:92:3259:-293.533,-27.6948,0	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:97:0,97:0:0:97:3464:-311.973,-29.1999,0	1/1:167:0,167:0:0:167:5916:-532.546,-50.272,0	1/1:94:0,94:0:0:94:3353:-301.987,-28.2968,0	1/1:92:0,92:0:0:92:3281:-295.509,-27.6948,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:92:0,92:0:0:92:3286:-295.959,-27.6948,0	1/1:76:1,75:1:36:75:2679:-237.756,-19.28,0	0/1:57:43,14:43:1540:14:504:-28.5394,0,-121.734	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	0/1:43:21,22:21:725:22:792:-58.6614,0,-52.6234	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:43:0,43:0:0:43:1523:-137.36,-12.9443,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:260:119,141:119:4211:141:5041:-375.562,0,-300.907	0/1:131:62,69:62:2204:69:2457:-181.944,0,-159.191	1/1:161:0,161:0:0:161:5741:-516.809,-48.4658,0	1/1:175:0,175:0:0:175:6255:-563.045,-52.6803,0	0/1:58:7,51:7:252:51:1820:-146.622,0,-5.56922	1/1:100:0,100:0:0:100:3556:-320.25,-30.103,0	1/1:268:0,268:0:0:268:9551:-859.548,-80.676,0	1/1:301:0,301:0:0:301:10714:-964.174,-90.61,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:300:0,300:0:0:300:10729:-965.516,-90.309,0	1/1:219:0,219:0:0:219:7804:-702.391,-65.9256,0	0/1:109:56,53:56:1978:53:1904:-138.822,0,-145.481	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:121:0,121:0:0:121:4307:-387.807,-36.4246,0	0/1:90:43,47:43:1532:47:1672:-123.673,0,-111.08	0/1:26:10,16:10:345:16:572:-43.9866,0,-23.554	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:209:0,209:0:0:209:7450:-670.398,-62.9153,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:214:97,117:97:3414:117:4162:-310.273,0,-243.058	0/1:44:20,24:20:703:24:864:-64.8372,0,-50.3482	0/1:38:23,15:23:803:15:536:-37.1357,0,-61.1492	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	0/1:121:60,61:60:2132:61:2158:-158.059,0,-155.724	1/1:272:0,272:0:0:272:9706:-873.49,-81.8802,0	1/1:83:0,83:0:0:83:2972:-267.713,-24.9855,0	1/1:84:0,84:0:0:84:3005:-270.68,-25.2865,0	1/1:101:0,101:0:0:101:3589:-323.181,-30.404,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:151:0,151:0:0:151:5377:-484.053,-45.4555,0	1/1:94:1,93:1:36:93:3307:-294.249,-24.6985,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:147:0,147:0:0:147:5224:-470.3,-44.2514,0	0/1:47:28,19:28:974:19:684:-47.7373,0,-73.8223	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:112:0,112:0:0:112:4012:-361.269,-33.7154,0	0/1:58:30,28:30:1054:28:1008:-73.5766,0,-77.7094	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:257:0,257:0:0:257:9147:-823.206,-77.3647,0	1/1:194:1,193:1:36:193:6841:-612.164,-54.8015,0	1/1:56:3,53:3:108:53:1892:-159.992,-6.78251,0	1/1:137:0,137:0:0:137:4844:-436.115,-41.2411,0	0/1:196:88,108:88:3090:108:3828:-285.719,0,-219.329	1/1:142:0,142:0:0:142:5013:-451.311,-42.7463,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	0/1:30:15,15:15:517:15:535:-39.4534,0,-37.8237	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:106:0,106:0:0:106:3792:-341.479,-31.9092,0	1/1:93:0,93:0:0:93:3279:-295.326,-27.9958,0	1/1:196:0,196:0:0:196:6965:-626.292,-59.0019,0	1/1:219:0,219:0:0:219:7826:-704.368,-65.9256,0	1/1:130:0,130:0:0:130:4617:-415.682,-39.1339,0	1/1:96:0,96:0:0:96:3420:-308.015,-28.8989,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:164:1,163:1:36:163:5809:-519.327,-45.7706,0	0/1:99:54,45:54:1932:45:1616:-115.928,0,-144.355	0/1:261:130,131:130:4602:131:4658:-340.813,0,-335.779	0/1:49:21,28:21:752:28:986:-74.3029,0,-53.2558	1/1:66:0,66:0:0:66:2361:-212.747,-19.868,0	0/1:40:16,24:16:551:24:852:-64.9592,0,-37.8733	0/1:84:32,52:32:1131:52:1861:-142.413,0,-76.8112	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:58:29,29:29:1040:29:1040:-76.4546,0,-76.4546	0/1:51:34,17:34:1177:17:608:-39.6995,0,-90.8795	1/1:169:0,169:0:0:169:5976:-537.949,-50.8741,0	1/1:95:0,95:0:0:95:3410:-307.113,-28.5979,0
chr02	1312565	.	C	T	40830.3	PASS	AB=0.512321;ABP=7.61208;AC=25;AF=0.132979;AN=188;AO=1816;CIGAR=1X;DP=10701;DPB=10701;DPRA=1.56979;EPP=3937.72;EPPR=19242.3;GTI=3;LEN=1;MEANALT=1.05556;MQM=59.995;MQMR=59.9957;NS=94;NUMALT=1;ODDS=0.501122;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64586;QR=314847;RO=8880;RPL=921;RPP=3.81862;RPPR=10.585;RPR=895;RUN=1;SAF=920;SAP=3.69905;SAR=896;SRF=4349;SRP=11.1103;SRR=4531;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:71:71,0:71:2504:0:0:0,-21.3731,-225.612	0/0:168:168,0:168:5962:0:0:0,-50.573,-536.69	0/0:142:141,1:141:5007:1:36:0,-39.148,-447.18	0/1:136:68,68:68:2424:68:2415:-176.666,0,-177.476	0/0:82:82,0:82:2901:0:0:0,-24.6845,-261.323	0/0:94:94,0:94:3335:0:0:0,-28.2968,-300.369	0/0:144:144,0:144:5120:0:0:0,-43.3483,-460.944	0/0:222:222,0:222:7818:0:0:0,-66.8287,-703.658	0/0:120:120,0:120:4239:0:0:0,-36.1236,-381.692	0/0:126:126,0:126:4474:0:0:0,-37.9298,-402.83	0/0:123:123,0:123:4376:0:0:0,-37.0267,-394.014	0/0:147:147,0:147:5143:0:0:0,-44.2514,-463.017	0/0:156:156,0:156:5507:0:0:0,-46.9607,-495.762	0/1:154:78,76:78:2787:76:2724:-199.044,0,-204.711	0/0:116:116,0:116:4111:0:0:0,-34.9195,-370.176	0/1:124:62,62:62:2200:62:2203:-161.207,0,-160.938	0/0:143:143,0:143:5015:0:0:0,-43.0473,-451.501	0/0:106:106,0:106:3780:0:0:0,-31.9092,-340.4	0/0:79:79,0:79:2791:0:0:0,-23.7814,-251.429	0/1:135:60,75:60:2127:75:2687:-201.435,0,-151.059	0/1:195:95,100:95:3369:100:3552:-261.186,0,-244.726	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/0:85:85,0:85:3028:0:0:0,-25.5875,-272.752	0/0:165:153,12:153:5445:12:426:0,-10.9926,-451.503	0/0:70:70,0:70:2455:0:0:0,-21.0721,-221.204	0/0:248:247,1:247:8746:1:36:0,-71.0572,-783.539	0/0:178:178,0:178:6290:0:0:0,-53.5833,-566.197	0/0:71:71,0:71:2516:0:0:0,-21.3731,-226.693	0/0:202:201,1:201:7155:1:36:0,-57.2098,-640.409	0/0:103:103,0:103:3649:0:0:0,-31.0061,-328.616	0/1:128:62,66:62:2198:66:2349:-173.136,0,-159.542	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:25:14,11:14:496:11:387:-27.6402,0,-37.4485	0/0:315:314,1:314:11118:1:36:0,-91.2262,-996.924	0/1:103:60,43:60:2151:43:1539:-107.796,0,-162.85	0/1:158:73,85:73:2571:85:3015:-224.017,0,-184.076	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:156:155,1:155:5523:1:32:0,-43.7614,-493.996	0/0:83:83,0:83:2933:0:0:0,-24.9855,-264.205	0/1:122:54,68:54:1918:68:2389:-178.539,0,-136.17	0/1:122:54,68:54:1923:68:2436:-182.77,0,-136.621	0/1:93:49,44:49:1716:44:1568:-113.416,0,-126.727	0/0:89:89,0:89:3161:0:0:0,-26.7917,-284.715	0/1:124:72,52:72:2564:52:1844:-128.911,0,-193.683	0/0:124:123,0:123:4410:0:0:0,-37.0267,-396.71	0/0:81:81,0:81:2882:0:0:0,-24.3834,-259.616	0/0:137:137,0:137:4899:0:0:0,-41.2411,-441.062	0/0:136:136,0:136:4786:0:0:0,-40.9401,-430.899	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:172:172,0:172:6077:0:0:0,-51.7772,-547.038	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:148:145,3:145:5106:3:108:0,-34.4773,-449.609	0/1:69:34,35:34:1220:35:1239:-91.0426,0,-89.3357	0/1:10:5,5:5:161:5:180:-13.5418,0,-11.7963	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:98:98,0:98:3492:0:0:0,-29.5009,-314.492	0/1:200:95,105:95:3380:105:3758:-278.214,0,-244.209	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:97:96,1:96:3427:1:27:0,-26.5001,-305.944	0/0:179:178,0:178:6340:0:0:0,-53.5833,-570.333	0/0:56:51,5:51:1815:5:180:0,-0.306024,-147.079	0/0:78:78,0:78:2759:0:0:0,-23.4803,-248.55	0/1:186:98,88:98:3481:88:3135:-226.385,0,-257.506	0/0:111:111,0:111:3952:0:0:0,-33.4143,-355.874	0/0:61:60,1:60:2131:1:36:0,-14.7646,-188.46	0/0:123:123,0:123:4363:0:0:0,-37.0267,-392.845	0/1:209:110,99:110:3920:99:3521:-254.185,0,-290.077	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:95:95,0:95:3384:0:0:0,-28.5978,-304.774	0/0:88:88,0:88:3135:0:0:0,-26.4906,-282.376	0/0:222:222,0:222:7871:0:0:0,-66.8287,-708.419	0/0:130:130,0:130:4621:0:0:0,-39.1339,-416.055	0/0:67:67,0:67:2372:0:0:0,-20.169,-213.736	0/0:123:123,0:123:4356:0:0:0,-37.0267,-392.217	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:107:106,0:106:3767:0:0:0,-31.9092,-338.911	0/1:132:66,65:66:2360:65:2325:-169.754,0,-172.903	0/1:223:102,121:102:3627:121:4275:-317.797,0,-259.504	0/1:163:75,88:75:2643:88:3138:-233.577,0,-189.048	0/0:125:125,0:125:4459:0:0:0,-37.6287,-401.481	0/1:179:84,94:84:2991:94:3350:-247.773,0,-215.479	0/1:224:105,119:105:3695:119:4253:-315.517,0,-265.324	0/0:57:57,0:57:2015:0:0:0,-17.1587,-181.623	0/0:117:117,0:117:4126:0:0:0,-35.2205,-371.527	0/0:108:108,0:108:3795:0:0:0,-32.5112,-341.749	0/0:93:93,0:93:3296:0:0:0,-27.9958,-296.859	0/1:155:80,75:80:2781:75:2652:-192.266,0,-203.869	0/1:121:45,76:45:1588:76:2663:-203.489,0,-106.783	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/0:201:200,1:200:7080:1:36:0,-56.9088,-633.667
chr02	1339806	.	A	G	121527	PASS	AB=0.511418;ABP=5.14256;AC=160;AF=0.869565;AN=184;AO=5256;CIGAR=1X;DP=6188;DPB=6188;DPRA=0;EPP=9793.4;EPPR=1802.51;GTI=2;LEN=1;MEANALT=1.05435;MQM=59.9606;MQMR=59.9654;NS=92;NUMALT=1;ODDS=0.793548;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186590;QR=33120;RO=926;RPL=5062;RPP=9793.4;RPPR=1802.51;RPR=194;RUN=1;SAF=0;SAP=11416.3;SAR=5256;SRF=0;SRP=2013.79;SRR=926;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1668:-150.404,-14.1484,0	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:96:0,96:0:0:96:3391:-305.358,-28.8989,0	0/1:125:58,65:58:2072:65:2308:-170.636,0,-149.408	1/1:42:0,42:0:0:42:1483:-133.763,-12.6433,0	1/1:36:0,36:0:0:36:1283:-115.773,-10.8371,0	1/1:79:0,79:0:0:79:2812:-253.319,-23.7814,0	1/1:95:0,95:0:0:95:3400:-306.215,-28.5979,0	1/1:64:0,64:0:0:64:2259:-203.57,-19.2659,0	1/1:50:0,50:0:0:50:1777:-160.211,-15.0515,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:95:0,95:0:0:95:3317:-298.745,-28.5979,0	1/1:71:0,71:0:0:71:2535:-228.401,-21.3731,0	0/1:61:34,27:34:1216:27:944:-66.9085,0,-91.3837	1/1:76:0,76:0:0:76:2708:-243.962,-22.8783,0	0/1:42:16,26:16:572:26:927:-71.1041,0,-39.1702	1/1:21:0,21:0:0:21:740:-66.9228,-6.32163,0	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:78:30,48:30:1076:48:1673:-127.241,0,-73.6725	0/1:114:58,56:58:2080:56:1980:-144.156,0,-153.153	1/1:89:0,89:0:0:89:3144:-283.186,-26.7917,0	1/1:104:0,104:0:0:104:3728:-335.721,-31.3071,0	1/1:47:2,45:2:68:45:1576:-135.671,-7.6907,0	1/1:73:0,73:0:0:73:2586:-232.987,-21.9752,0	1/1:176:0,176:0:0:176:6266:-564.036,-52.9813,0	1/1:108:0,108:0:0:108:3808:-342.919,-32.5112,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:134:0,134:0:0:134:4777:-430.087,-40.338,0	1/1:122:1,121:1:36:121:4290:-382.678,-33.1274,0	0/1:66:38,28:38:1360:28:1004:-70.8079,0,-102.833	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:184:0,184:0:0:184:6490:-584.188,-55.3895,0	0/1:102:59,43:59:2116:43:1510:-105.397,0,-159.776	0/1:42:18,24:18:648:24:834:-62.7298,0,-46.0086	.:.:.:.:.:.:.:.	1/1:88:0,88:0:0:88:3139:-282.735,-26.4906,0	1/1:27:0,27:0:0:27:939:-84.8196,-8.12781,0	0/1:122:70,52:70:2516:52:1829:-128.115,0,-189.966	0/1:44:23,21:23:819:21:738:-53.4961,0,-60.7862	0/1:64:34,29:34:1220:29:1012:-72.065,0,-90.7821	1/1:101:0,101:0:0:101:3595:-323.758,-30.404,0	0/1:83:33,50:33:1188:50:1784:-135.857,0,-82.2431	1/1:149:0,149:0:0:149:5315:-478.486,-44.8535,0	1/1:57:0,57:0:0:57:2020:-182.07,-17.1587,0	1/1:72:1,71:1:36:71:2495:-221.201,-18.0759,0	1/1:98:0,98:0:0:98:3453:-310.983,-29.5009,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:68:0,68:0:0:68:2431:-219.045,-20.47,0	1/1:43:0,43:0:0:43:1533:-138.262,-12.9443,0	1/1:13:0,12:0:0:12:428:-38.6376,-3.61236,0	1/1:76:0,76:0:0:76:2719:-244.953,-22.8783,0	0/1:47:21,26:21:752:26:928:-69.6898,0,-53.8578	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:65:0,65:0:0:65:2314:-208.15,-19.567,0	0/1:90:46,44:46:1647:44:1557:-113.327,0,-121.425	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:118:2,116:2:72:116:4151:-366.936,-28.6848,0	1/1:142:1,141:1:36:141:5025:-448.799,-39.148,0	0/1:61:6,55:6:216:55:1972:-159.392,0,-1.42768	1/1:49:0,49:0:0:49:1740:-156.884,-14.7505,0	0/1:118:58,60:58:2067:60:2149:-158.155,0,-150.777	1/1:93:1,92:1:36:92:3281:-291.912,-24.3975,0	1/1:32:0,32:0:0:32:1127:-101.737,-9.63296,0	1/1:29:0,29:0:0:29:1010:-91.207,-8.72987,0	0/1:43:20,23:20:716:23:803:-59.6441,0,-51.8234	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:92:0,91:0:0:91:3243:-291.88,-27.3937,0	1/1:51:0,51:0:0:51:1788:-161.199,-15.3525,0	1/1:119:1,118:1:36:118:4202:-374.764,-32.2243,0	1/1:94:0,94:0:0:94:3353:-301.986,-28.2968,0	1/1:85:0,85:0:0:85:3027:-272.66,-25.5876,0	1/1:49:0,49:0:0:49:1740:-156.882,-14.7505,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:35:0,35:0:0:35:1231:-111.092,-10.5361,0	0/1:79:44,35:44:1565:35:1241:-88.2111,0,-117.358	0/1:160:91,68:91:3245:68:2433:-171.002,0,-244.047	0/1:58:25,33:25:896:33:1165:-87.6953,0,-63.5006	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:47:26,21:26:932:21:741:-52.864,0,-70.0505	0/1:104:50,54:50:1788:54:1916:-141.303,0,-129.895	1/1:28:0,28:0:0:28:993:-89.6825,-8.42884,0	1/1:79:0,79:0:0:79:2785:-250.889,-23.7814,0	1/1:70:1,69:1:36:69:2412:-213.733,-17.4738,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:73:26,47:26:909:47:1692:-130.592,0,-60.1482	0/1:60:32,28:32:1148:28:989:-71.2602,0,-85.568	1/1:44:0,44:0:0:44:1554:-140.151,-13.2453,0	1/1:113:0,113:0:0:113:4032:-363.067,-34.0164,0
chr02	1371651	.	T	C	3763.01	PASS	AB=0.342497;ABP=191.118;AC=24;AF=0.129032;AN=186;AO=303;CIGAR=1X;DP=3729;DPB=3729;DPRA=0.888401;EPP=660.966;EPPR=7427.28;GTI=2;LEN=1;MEANALT=1.03704;MQM=59.9571;MQMR=59.9752;NS=93;NUMALT=1;ODDS=0.49202;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=10783;QR=122671;RO=3423;RPL=0;RPP=660.966;RPPR=7427.28;RPR=303;RUN=1;SAF=303;SAP=660.966;SAR=0;SRF=3423;SRP=7435.96;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.042	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:66:66,0:66:2367:0:0:0,-19.868,-213.287	0/1:87:56,31:56:2008:31:1104:-73.481,0,-154.804	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/0:60:60,0:60:2147:0:0:0,-18.0618,-193.497	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:23:14,9:14:500:9:316:-21.8552,0,-38.4125	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:34:24,10:24:856:10:352:-21.7832,0,-67.1261	0/1:44:28,16:28:1000:16:560:-37.4834,0,-77.0701	0/0:35:35,0:35:1236:0:0:0,-10.536,-111.541	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:39:38,1:38:1364:1:32:0,-8.54086,-119.861	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.586	0/0:85:84,0:84:3003:0:0:0,-25.2865,-270.141	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:104:104,0:104:3731:0:0:0,-31.3071,-335.977	0/0:64:63,0:63:2268:0:0:0,-18.9649,-204.17	0/1:67:47,20:47:1668:20:716:-44.5987,0,-130.236	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:9:7,2:7:252:2:68:-3.74844,0,-20.3197	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.768	0/1:44:27,17:27:968:17:612:-42.1681,0,-74.192	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.168	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:63:48,14:48:1728:14:491:-25.498,0,-136.782	0/1:19:15,4:15:536:4:144:-7.59405,0,-42.8552	0/1:27:16,11:16:568:11:396:-27.8549,0,-43.3241	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.874	0/1:35:29,6:29:1040:6:216:-9.25446,0,-83.3783	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.732	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:66:66,0:66:2367:0:0:0,-19.868,-213.287	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:55:54,1:54:1936:1:36:0,-12.9584,-170.918	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.091	0/1:56:30,26:30:1076:26:924:-66.62,0,-80.2952	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/0:27:25,2:25:900:2:72:0,-1.29109,-74.4843	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/1:53:30,23:30:1071:23:815:-57.7162,0,-80.747	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.382	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.975	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.473	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:40:24,16:24:860:16:576:-40.1338,0,-65.6806	0/1:68:49,19:49:1756:19:665:-39.7027,0,-137.854	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:15:7,8:7:252:8:280:-21.0239,0,-18.5135	0/1:50:30,20:30:1076:20:720:-50.0488,0,-82.1014	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:41:34,7:34:1220:7:248:-10.322,0,-97.7646	0/1:17:2,15:2:72:15:540:-43.819,0,-1.71921	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01
chr02	1371683	.	C	G	3646.2	PASS	AB=0.336374;ABP=206.958;AC=24;AF=0.130435;AN=184;AO=298;CIGAR=1X;DP=3727;DPB=3727;DPRA=0.862274;EPP=650.109;EPPR=7438.13;GTI=2;LEN=1;MEANALT=1.03846;MQM=59.9564;MQMR=59.9892;NS=92;NUMALT=1;ODDS=0.147271;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=10613;QR=121462;RO=3424;RPL=298;RPP=650.109;RPPR=7438.13;RPR=0;RUN=1;SAF=298;SAP=650.109;SAR=0;SRF=3424;SRP=7438.13;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.021	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/0:64:64,0:64:2269:0:0:0,-19.2659,-204.471	0/1:87:56,31:56:1969:31:1112:-74.2017,0,-151.291	0/0:38:38,0:38:1336:0:0:0,-11.4391,-120.537	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/0:67:67,0:67:2365:0:0:0,-20.169,-213.105	0/0:56:56,0:56:1985:0:0:0,-16.8577,-178.922	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:21:21,0:21:710:0:0:0,-6.32163,-64.2119	0/0:61:61,0:61:2156:0:0:0,-18.3628,-194.305	0/0:31:31,0:31:1084:0:0:0,-9.33193,-97.8661	0/1:14:9,5:9:324:5:165:-10.9592,0,-25.2914	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:24:15,9:15:536:9:316:-21.5541,0,-41.3501	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:35:25,10:25:873:10:356:-21.8452,0,-68.3485	0/1:45:28,17:28:967:17:597:-40.5098,0,-73.7915	0/0:34:34,0:34:1196:0:0:0,-10.235,-107.943	0/0:76:74,0:74:2638:0:0:0,-22.2762,-237.306	0/0:41:40,1:40:1423:1:36:0,-8.74395,-124.768	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:116:116,0:116:4126:0:0:0,-34.9195,-371.526	0/0:84:84,0:84:2964:0:0:0,-25.2865,-266.991	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:102:102,0:102:3605:0:0:0,-30.7051,-324.656	0/0:63:63,0:63:2231:0:0:0,-18.9649,-201.054	0/1:66:48,18:48:1702:18:648:-38.7839,0,-133.597	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:92:92,0:92:3260:0:0:0,-27.6948,-293.621	0/1:47:30,17:30:1063:17:608:-40.9036,0,-81.8324	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:61:61,0:61:2154:0:0:0,-18.3628,-194.123	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:65:51,14:51:1803:14:500:-25.7692,0,-142.984	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:28:16,12:16:543:12:413:-29.069,0,-40.7625	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:34:28,6:28:1000:6:212:-9.18978,0,-80.0804	0/0:120:120,0:120:4267:0:0:0,-36.1236,-384.211	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:53:53,0:53:1873:0:0:0,-15.9546,-168.847	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:68:68,0:68:2407:0:0:0,-20.47,-216.887	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:38:37,0:37:1328:0:0:0,-11.1381,-119.502	0/1:55:30,25:30:1068:25:900:-64.7644,0,-79.8754	.:.:.:.:.:.:.:.	0/0:102:102,0:102:3630:0:0:0,-30.7051,-326.906	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:27:25,2:25:872:2:72:0,-1.29109,-71.9569	0/0:51:51,0:51:1760:0:0:0,-15.3525,-158.678	0/1:54:31,22:31:1098:22:788:-54.9305,0,-82.8144	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:32:20,12:20:708:12:432:-29.5882,0,-54.4126	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:91:91,0:91:3243:0:0:0,-27.3937,-292.091	0/0:29:28,0:28:1008:0:0:0,-8.42884,-90.6765	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.744	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.007	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/1:40:24,16:24:845:16:572:-39.7722,0,-64.3259	0/1:67:48,19:48:1682:19:684:-41.7213,0,-131.493	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/1:15:7,8:7:248:8:275:-20.5672,0,-18.1487	0/1:48:30,18:30:1055:18:644:-43.8127,0,-80.8106	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:14:14,0:14:486:0:0:0,-4.21442,-44.068	0/1:41:34,7:34:1193:7:243:-9.86525,0,-95.3309	0/1:16:2,14:2:72:14:500:-40.5197,0,-2.02024	0/0:58:58,0:58:2066:0:0:0,-17.4597,-186.21	0/0:43:43,0:43:1516:0:0:0,-12.9443,-136.73
chr02	1398456	.	T	C	16679	PASS	AB=0.482315;ABP=8.92425;AC=24;AF=0.12766;AN=188;AO=1061;CIGAR=1X;DP=8256;DPB=8256;DPRA=1.21118;EPP=2306.94;EPPR=15615.9;GTI=0;LEN=1;MEANALT=1.06452;MQM=59.8907;MQMR=59.968;NS=94;NUMALT=1;ODDS=7.50361;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37127;QR=256357;RO=7190;RPL=0;RPP=2306.94;RPPR=15615.9;RPR=1061;RUN=1;SAF=0;SAP=2306.94;SAR=1061;SRF=0;SRP=15615.9;SRR=7190;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:801:0:0:0,-6.92369,-72.4067	0/0:98:98,0:98:3499:0:0:0,-29.5009,-315.121	0/0:69:69,0:69:2431:0:0:0,-20.7711,-219.044	0/1:202:109,93:109:3872:93:3278:-234.432,0,-287.867	0/0:50:50,0:50:1792:0:0:0,-15.0515,-160.935	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:98:98,0:98:3494:0:0:0,-29.5009,-314.671	0/0:143:143,0:143:5107:0:0:0,-43.0473,-459.765	0/0:118:118,0:118:4201:0:0:0,-35.5215,-378.269	0/0:95:95,0:95:3358:0:0:0,-28.5978,-302.411	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:94:94,0:94:3351:0:0:0,-28.2968,-301.807	0/0:68:66,1:66:2355:1:36:0,-16.9206,-208.62	0/1:41:22,19:22:779:19:650:-46.3876,0,-58.0898	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/1:75:33,42:33:1176:42:1476:-110.554,0,-83.5705	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.089	0/0:38:38,0:38:1339:0:0:0,-11.4391,-120.809	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:155:81,74:81:2892:74:2597:-187.315,0,-213.856	0/1:171:98,73:98:3488:73:2575:-180.522,0,-262.645	0/0:85:85,0:85:3034:0:0:0,-25.5875,-273.287	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/0:29:28,1:28:995:1:36:0,-5.13159,-86.2634	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:311:309,1:309:11018:1:27:0,-90.8995,-988.786	0/0:195:195,0:195:6982:0:0:0,-58.7008,-628.443	0/0:36:36,0:36:1266:0:0:0,-10.8371,-114.241	0/0:313:313,0:313:11197:0:0:0,-94.2224,-1007.62	0/0:200:200,0:200:7065:0:0:0,-60.206,-635.919	0/1:88:45,43:45:1600:43:1503:-109.069,0,-117.8	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/0:183:183,0:183:6529:0:0:0,-55.0885,-587.694	0/1:103:64,39:64:2296:39:1381:-93.4941,0,-175.895	0/1:43:26,17:26:927:17:565:-38.2178,0,-70.8031	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:154:154,0:154:5463:0:0:0,-46.3586,-491.801	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:81:35,46:35:1244:46:1595:-119.449,0,-87.8812	0/1:58:35,23:35:1228:23:794:-54.3147,0,-93.3613	0/1:72:40,32:40:1427:32:1108:-78.3498,0,-107.053	0/0:101:101,0:101:3602:0:0:0,-30.404,-324.386	0/1:135:66,69:66:2350:69:2432:-178.496,0,-171.119	0/0:194:193,0:193:6876:0:0:0,-58.0988,-618.542	0/0:94:93,1:93:3324:1:32:0,-25.0975,-296.179	0/0:121:121,0:121:4335:0:0:0,-36.4246,-390.324	0/0:64:64,0:64:2278:0:0:0,-19.2659,-205.281	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:115:115,0:115:4106:0:0:0,-34.6184,-369.714	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:167:166,1:166:5902:1:27:0,-47.6692,-528.688	0/1:17:6,11:6:212:11:379:-29.323,0,-14.3073	0/1:11:6,5:6:216:5:165:-11.8623,0,-16.4792	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:76:76,0:76:2703:0:0:0,-22.8783,-243.49	0/1:79:35,44:35:1236:44:1532:-114.387,0,-87.7629	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:238:238,0:238:8515:0:0:0,-71.6451,-766.35	0/0:159:158,0:158:5655:0:0:0,-47.5627,-508.741	0/0:74:71,3:71:2527:3:108:0,-12.201,-217.606	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/1:151:89,62:89:3148:62:2198:-152.629,0,-238.072	0/0:163:160,3:160:5696:3:100:0,-39.7374,-503.417	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/0:53:53,0:53:1874:0:0:0,-15.9546,-168.938	0/1:38:11,27:11:396:27:949:-74.2836,0,-24.5436	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.725	0/0:104:103,0:103:3669:0:0:0,-31.0061,-330.172	0/0:111:111,0:111:3967:0:0:0,-33.4143,-357.221	0/0:175:175,0:175:6262:0:0:0,-52.6802,-563.673	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.217	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:153:153,0:153:5476:0:0:0,-46.0576,-492.968	0/1:109:65,44:65:2323:44:1546:-106.615,0,-176.517	0/1:253:138,115:138:4927:115:4050:-288.527,0,-367.419	0/0:58:58,0:58:2052:0:0:0,-17.4597,-184.949	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.268	0/1:39:23,16:23:824:16:529:-36.1826,0,-62.7431	0/1:128:52,76:52:1860:76:2639:-199.226,0,-129.148	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.509	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/1:53:25,28:25:887:28:979:-72.4675,0,-64.1935	0/1:59:14,45:14:504:45:1589:-125.538,0,-27.9373	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:118:118,0:118:4199:0:0:0,-35.5215,-378.09
chr02	1398460	.	A	G	158033	PASS	AB=0.514692;ABP=7.09402;AC=164;AF=0.87234;AN=188;AO=7194;CIGAR=1X;DP=8265;DPB=8265;DPRA=0;EPP=15624.6;EPPR=2313.46;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.969;MQMR=59.9483;NS=94;NUMALT=1;ODDS=7.28314;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255555;QR=37938;RO=1064;RPL=0;RPP=15624.6;RPPR=2313.46;RPR=7194;RUN=1;SAF=0;SAP=15624.6;SAR=7194;SRF=0;SRP=2313.46;SRR=1064;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,23:0:0:23:819:-73.6435,-6.92369,0	1/1:97:0,97:0:0:97:3441:-309.901,-29.1999,0	1/1:70:0,70:0:0:70:2475:-223.001,-21.0721,0	0/1:198:90,108:90:3228:108:3866:-288.531,0,-231.136	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:98:0,98:0:0:98:3468:-312.33,-29.5009,0	1/1:146:0,145:0:0:145:5158:-463.993,-43.6494,0	1/1:114:0,113:0:0:113:4015:-361.328,-34.0164,0	1/1:97:0,97:0:0:97:3456:-311.226,-29.1999,0	1/1:37:0,37:0:0:37:1314:-118.561,-11.1381,0	1/1:92:0,92:0:0:92:3237:-291.553,-27.6948,0	1/1:67:0,67:0:0:67:2410:-217.156,-20.169,0	0/1:39:18,21:18:644:21:743:-55.4532,0,-46.4639	1/1:54:0,54:0:0:54:1888:-170.194,-16.2556,0	0/1:76:43,33:43:1516:33:1179:-83.5396,0,-113.852	1/1:34:0,34:0:0:34:1198:-108.117,-10.235,0	1/1:36:0,36:0:0:36:1272:-114.78,-10.8371,0	1/1:29:0,29:0:0:29:1022:-92.2909,-8.72987,0	0/1:154:74,80:74:2652:80:2841:-209.567,0,-192.568	0/1:173:74,98:74:2648:98:3459:-259.381,0,-186.43	1/1:81:0,81:0:0:81:2882:-259.616,-24.3834,0	1/1:80:0,80:0:0:80:2865:-258.086,-24.0824,0	1/1:28:1,27:1:36:27:949:-82.1222,-4.83057,0	1/1:65:0,65:0:0:65:2304:-207.62,-19.567,0	1/1:311:1,310:1:36:310:11038:-989.7,-90.0221,0	1/1:196:0,196:0:0:196:7015:-631.41,-59.0019,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:314:0,314:0:0:314:11179:-1006,-94.5234,0	1/1:204:0,204:0:0:204:7256:-653.092,-61.4101,0	0/1:90:45,45:45:1603:45:1608:-117.917,0,-117.467	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:26:0,26:0:0:26:906:-81.8509,-7.82678,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:181:0,181:0:0:181:6462:-581.666,-54.4864,0	0/1:105:39,66:39:1392:66:2351:-180.241,0,-93.4135	0/1:48:22,26:22:780:26:917:-68.3952,0,-56.0736	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:155:0,155:0:0:155:5498:-494.947,-46.6597,0	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	0/1:77:43,34:43:1540:34:1193:-84.4933,0,-115.714	0/1:57:24,33:24:842:33:1173:-88.7168,0,-58.937	0/1:71:32,39:32:1148:39:1396:-104.566,0,-82.2567	1/1:100:0,100:0:0:100:3583:-322.677,-30.103,0	0/1:134:69,65:69:2472:65:2310:-167.822,0,-182.396	1/1:196:0,196:0:0:196:6959:-626.369,-59.0019,0	1/1:96:1,95:1:36:95:3372:-300.097,-25.3006,0	1/1:120:0,120:0:0:120:4291:-386.367,-36.1236,0	1/1:63:0,63:0:0:63:2232:-201.142,-18.9649,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:116:0,116:0:0:116:4134:-372.234,-34.9195,0	1/1:84:0,84:0:0:84:2961:-266.721,-25.2865,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:171:0,171:0:0:171:6051:-544.65,-51.4761,0	0/1:19:12,7:12:415:7:243:-16.4879,0,-31.9607	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	1/1:20:0,20:0:0:20:692:-62.5986,-6.0206,0	1/1:75:0,75:0:0:75:2681:-241.498,-22.5773,0	0/1:78:43,35:43:1519:35:1225:-87.0711,0,-113.522	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:241:0,241:0:0:241:8540:-768.601,-72.5482,0	1/1:158:0,158:0:0:158:5594:-503.577,-47.5627,0	1/1:74:2,72:2:72:72:2565:-224.262,-15.4395,0	1/1:100:0,100:0:0:100:3534:-318.269,-30.103,0	0/1:150:62,88:62:2186:88:3088:-232.993,0,-151.848	1/1:165:2,163:2:72:163:5767:-512.223,-42.8332,0	1/1:29:0,29:0:0:29:1023:-92.3817,-8.72987,0	1/1:51:0,51:0:0:51:1804:-162.639,-15.3525,0	0/1:39:29,10:29:1028:10:360:-21.0041,0,-81.0929	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:130:0,129:0:0:129:4585:-412.457,-38.8329,0	1/1:106:0,106:0:0:106:3732:-336.08,-31.9092,0	1/1:112:0,111:0:0:111:3959:-356.124,-33.4143,0	1/1:177:0,176:0:0:176:6265:-563.584,-52.9813,0	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	1/1:88:0,88:0:0:88:3149:-283.633,-26.4906,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:149:0,149:0:0:149:5318:-478.755,-44.8535,0	0/1:110:44,66:44:1584:66:2325:-176.394,0,-109.738	0/1:252:113,139:113:4052:139:4889:-364.303,0,-289.007	1/1:58:0,58:0:0:58:2064:-186.03,-17.4597,0	1/1:74:0,74:0:0:74:2639:-237.754,-22.2762,0	0/1:41:18,23:18:627:23:812:-61.0587,0,-44.4122	0/1:129:77,52:77:2760:52:1853:-128.215,0,-209.809	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:89:1,88:1:36:88:3133:-278.597,-23.1934,0	1/1:51:0,51:0:0:51:1800:-162.279,-15.3525,0	1/1:36:0,36:0:0:36:1272:-114.781,-10.8371,0	0/1:52:27,25:27:957:25:892:-64.9461,0,-70.7903	0/1:59:46,13:46:1629:13:453:-23.3389,0,-129.136	1/1:58:0,58:0:0:58:2067:-186.3,-17.4597,0	1/1:121:0,121:0:0:121:4293:-386.547,-36.4246,0
chr02	1435549	.	T	C	94210	PASS	AB=0.47913;ABP=9.44557;AC=159;AF=0.86413;AN=184;AO=4329;CIGAR=1X;DP=5233;DPB=5233;DPRA=0;EPP=9403.31;EPPR=1950.82;GTI=4;LEN=1;MEANALT=1.06522;MQM=59.9931;MQMR=59.9755;NS=92;NUMALT=1;ODDS=0.908579;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154403;QR=30621;RO=897;RPL=4329;RPP=9403.31;RPPR=1950.82;RPR=0;RUN=1;SAF=0;SAP=9403.31;SAR=4329;SRF=0;SRP=1950.82;SRR=897;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:164:0,163:0:0:163:5848:-526.07,-49.0679,0	1/1:121:0,121:0:0:121:4309:-387.987,-36.4246,0	0/1:84:45,39:45:1555:39:1400:-101.013,0,-114.948	1/1:34:0,33:0:0:33:1184:-106.547,-9.93399,0	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	1/1:64:0,62:0:0:62:2179:-196.012,-18.6639,0	1/1:73:0,73:0:0:73:2586:-232.987,-21.9752,0	1/1:63:0,63:0:0:63:2240:-201.864,-18.9649,0	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:54:1,53:1:36:53:1900:-167.68,-12.6573,0	1/1:82:0,82:0:0:82:2901:-261.327,-24.6845,0	0/1:66:38,28:38:1349:28:996:-70.0869,0,-101.84	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:65:27,38:27:933:38:1364:-103.494,0,-64.7137	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:51:2,49:2:72:49:1764:-152.207,-8.51581,0	1/1:137:0,137:0:0:137:4923:-443.219,-41.2411,0	0/1:59:27,32:27:907:32:1148:-85.8691,0,-64.1723	0/1:91:55,36:55:1847:36:1292:-89.19,0,-139.104	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:63:3,60:3:100:60:2140:-183.538,-9.63445,0	1/1:49:0,49:0:0:49:1730:-155.98,-14.7505,0	1/1:81:0,80:0:0:80:2842:-255.656,-24.0824,0	1/1:111:0,111:0:0:111:3961:-356.679,-33.4143,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:83:0,83:0:0:83:2953:-266.002,-24.9855,0	1/1:70:0,70:0:0:70:2489:-224.262,-21.0721,0	0/1:58:25,33:25:865:33:1180:-89.0483,0,-60.7035	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:185:0,185:0:0:185:6598:-593.899,-55.6906,0	0/1:41:23,18:23:752:18:648:-46.3097,0,-55.6386	0/1:86:47,39:47:1559:39:1400:-100.411,0,-114.697	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:79:0,79:0:0:79:2820:-254.04,-23.7814,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:49:33,16:33:1108:16:572:-37.063,0,-85.0744	0/1:83:46,37:46:1565:37:1328:-94.8367,0,-116.144	0/1:66:29,37:29:995:37:1324:-99.5941,0,-69.9854	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:47:29,18:29:1021:18:648:-44.5035,0,-78.0518	1/1:56:0,56:0:0:56:1985:-178.836,-16.8577,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:67:0,67:0:0:67:2378:-214.275,-20.169,0	.:.:.:.:.:.:.:.	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:57:1,56:1:36:56:2008:-177.395,-13.5604,0	0/1:41:16,25:16:542:25:892:-68.2575,0,-36.7555	0/1:9:3,6:3:100:6:216:-17.0812,0,-6.62117	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:43:1,42:1:36:42:1478:-129.712,-9.34602,0	0/1:97:51,46:51:1771:46:1639:-118.599,0,-130.467	.:.:.:.:.:.:.:.	1/1:50:0,49:0:0:49:1737:-156.253,-14.7505,0	1/1:77:1,76:1:36:76:2720:-241.445,-19.581,0	0/1:33:3,30:3:108:30:1050:-84.8723,0,-0.14118	1/1:33:1,32:1:36:32:1133:-98.6784,-6.33572,0	0/1:64:36,28:36:1167:28:1004:-71.4099,0,-86.0484	1/1:62:0,62:0:0:62:2205:-198.714,-18.6639,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:34:0,34:0:0:34:1182:-106.681,-10.235,0	0/1:95:56,39:56:1950:39:1385:-96.349,0,-147.175	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:49:0,49:0:0:49:1741:-156.972,-14.7505,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:100:0,100:0:0:100:3495:-314.758,-30.103,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:40:0,40:0:0:40:1425:-128.545,-12.0412,0	1/1:37:1,36:1:36:36:1292:-112.985,-7.53984,0	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	0/1:45:16,29:16:545:29:1017:-78.2935,0,-35.8245	0/1:122:63,59:63:2226:59:2097:-152.272,0,-163.876	1/1:92:0,91:0:0:91:3241:-291.551,-27.3937,0	1/1:52:0,52:0:0:52:1848:-166.6,-15.6536,0	0/1:73:34,39:34:1137:39:1400:-104.324,0,-80.6466	0/1:146:75,71:75:2624:71:2532:-184.181,0,-192.453	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:50:0,50:0:0:50:1783:-160.753,-15.0515,0	1/1:52:0,52:0:0:52:1847:-166.508,-15.6536,0	0/1:89:41,48:41:1395:48:1720:-128.294,0,-99.0477	0/1:88:66,22:66:2140:22:788:-44.7542,0,-166.362	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:107:0,107:0:0:107:3810:-343.096,-32.2102,0
chr02	1599021	.	G	A	516025	PASS	AB=0.520124;ABP=24.5973;AC=163;AF=0.867021;AN=188;AO=18758;CIGAR=1X;DP=21723;DPB=21723;DPRA=0;EPP=40735.5;EPPR=6437.08;GTI=0;LEN=1;MEANALT=1.02128;MQM=57.105;MQMR=59.8073;NS=94;NUMALT=1;ODDS=7.75454;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=666372;QR=105354;RO=2963;RPL=12063;RPP=3338.75;RPPR=608.561;RPR=6695;RUN=1;SAF=12063;SAP=3338.75;SAR=6695;SRF=1936;SRP=608.561;SRR=1027;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:0,76:0:0:76:2699:-242.489,-22.8783,0	1/1:375:0,375:0:0:375:13342:-1199.24,-112.886,0	1/1:350:0,350:0:0:350:12460:-1119.7,-105.361,0	0/1:488:229,259:229:8179:259:9159:-674.713,0,-589.197	1/1:231:1,230:1:36:230:8164:-729.732,-65.9397,0	1/1:116:0,116:0:0:116:4129:-371.323,-34.9195,0	1/1:343:0,343:0:0:343:12191:-1095.77,-103.253,0	1/1:473:0,473:0:0:473:16782:-1506.11,-142.387,0	1/1:228:0,228:0:0:228:8082:-726.286,-68.6348,0	1/1:200:1,199:1:36:199:7083:-632,-56.6077,0	1/1:114:0,114:0:0:114:4046:-363.42,-34.3174,0	1/1:156:0,156:0:0:156:5566:-500.695,-46.9607,0	1/1:150:0,150:0:0:150:5356:-481.49,-45.1545,0	0/1:184:94,90:94:3316:90:3199:-232.137,0,-243.251	1/1:161:1,160:1:36:160:5716:-510.328,-44.8676,0	0/1:102:38,64:38:1347:64:2259:-172.601,0,-90.7925	1/1:148:0,148:0:0:148:5281:-475.023,-44.5524,0	1/1:145:0,145:0:0:145:5130:-461.227,-43.6494,0	1/1:97:0,97:0:0:97:3453:-309.955,-29.1999,0	0/1:537:272,265:272:9715:265:9467:-689.943,0,-712.64	0/1:298:136,162:136:4842:162:5685:-421.122,0,-346.192	1/1:174:0,174:0:0:174:6179:-555.506,-52.3792,0	1/1:167:0,167:0:0:167:5946:-534.203,-50.272,0	0/1:273:136,137:136:4854:137:4871:-355.281,0,-354.83	1/1:195:0,195:0:0:195:6907:-621.255,-58.7009,0	1/1:734:0,734:0:0:734:26115:-2347.17,-220.956,0	1/1:565:1,564:1:36:564:20091:-1802.13,-166.484,0	1/1:96:0,96:0:0:96:3423:-307.859,-28.8989,0	1/1:631:0,631:0:0:631:22442:-2018.4,-189.95,0	1/1:241:0,241:0:0:241:8538:-766.911,-72.5482,0	0/1:234:102,132:102:3647:132:4670:-349.611,0,-257.993	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:74:0,74:0:0:74:2588:-232.846,-22.2762,0	1/1:13:0,13:0:0:13:464:-41.9773,-3.91339,0	1/1:25:0,25:0:0:25:882:-79.6293,-7.52575,0	0/1:37:24,13:24:856:13:468:-31.2975,0,-66.223	1/1:400:0,400:0:0:400:14246:-1279.68,-120.412,0	0/1:347:164,183:164:5820:183:6542:-483.284,0,-419.446	0/1:187:92,95:92:3256:95:3367:-246.114,0,-236.872	1/1:10:0,10:0:0:10:341:-30.9927,-3.0103,0	1/1:340:0,340:0:0:340:12094:-1086.67,-102.35,0	1/1:90:0,90:0:0:90:3227:-289.852,-27.0927,0	1/1:302:0,302:0:0:302:10741:-964.618,-90.9111,0	1/1:166:0,166:0:0:166:5935:-533.227,-49.971,0	0/1:149:63,86:63:2240:86:3007:-225.117,0,-157.002	1/1:224:1,223:1:36:223:7916:-708.112,-63.8324,0	0/1:360:161,199:161:5707:199:7065:-526.41,0,-405.378	1/1:478:0,478:0:0:478:16859:-1515.69,-143.892,0	1/1:204:0,204:0:0:204:7270:-652.132,-61.4101,0	1/1:432:1,431:1:36:431:15369:-1376.5,-126.447,0	1/1:320:0,320:0:0:320:11348:-1020.14,-96.3296,0	1/1:15:0,15:0:0:15:540:-48.8754,-4.51545,0	1/1:367:0,367:0:0:367:13167:-1183.87,-110.478,0	1/1:98:0,98:0:0:98:3463:-311.463,-29.5009,0	1/1:23:0,23:0:0:23:828:-74.721,-6.92369,0	1/1:377:0,377:0:0:377:13374:-1201.6,-113.488,0	0/1:141:68,73:68:2415:73:2584:-190.122,0,-175.146	0/1:15:5,10:5:176:10:360:-28.2255,0,-11.6696	1/1:37:0,37:0:0:37:1328:-119.655,-11.1381,0	1/1:188:0,188:0:0:188:6649:-597.589,-56.5936,0	0/1:198:96,102:96:3407:102:3604:-264.386,0,-247.064	1/1:20:0,20:0:0:20:704:-63.6361,-6.0206,0	1/1:496:0,496:0:0:496:17681:-1590.01,-149.311,0	1/1:348:4,344:4:135:344:12211:-1084.47,-92.2759,0	1/1:145:3,142:3:108:142:5003:-439.848,-33.5742,0	1/1:215:0,215:0:0:215:7600:-683.03,-64.7215,0	0/1:484:259,224:259:9234:224:7977:-571.314,0,-685.394	1/1:218:1,217:1:36:217:7739:-692.41,-62.0263,0	1/1:91:0,91:0:0:91:3239:-291.158,-27.3937,0	1/1:261:0,261:0:0:261:9277:-833.814,-78.5688,0	0/1:194:80,114:80:2816:114:4047:-305.623,0,-195.245	1/1:47:0,47:0:0:47:1680:-150.622,-14.1484,0	1/1:212:2,210:2:72:210:7401:-658.26,-56.9816,0	0/1:162:86,76:86:3051:76:2700:-194.313,0,-226.034	1/1:358:0,358:0:0:358:12642:-1134.98,-107.769,0	1/1:495:3,492:3:108:492:17455:-1559.1,-138.935,0	1/1:261:0,261:0:0:261:9251:-831.239,-78.5688,0	1/1:293:0,293:0:0:293:10419:-935.301,-88.2018,0	1/1:18:0,18:0:0:18:636:-57.5512,-5.41854,0	1/1:349:1,348:1:36:348:12365:-1107.86,-101.461,0	0/1:295:124,171:124:4386:171:6077:-457.046,0,-306.056	0/1:486:216,269:216:7705:269:9534:-710.688,0,-546.36	1/1:246:0,246:0:0:246:8722:-782.944,-74.0534,0	1/1:148:0,148:0:0:148:5242:-470.17,-44.5524,0	0/1:202:104,98:104:3680:98:3487:-252.958,0,-270.57	0/1:291:133,158:133:4719:158:5611:-416.457,0,-337.237	0/1:101:43,58:43:1531:58:2067:-155.561,0,-107.678	1/1:160:0,160:0:0:160:5694:-511.846,-48.1648,0	1/1:145:0,145:0:0:145:5117:-459.885,-43.6494,0	1/1:95:0,95:0:0:95:3377:-303.599,-28.5979,0	0/1:164:79,85:79:2787:85:3011:-221.401,0,-201.689	0/1:208:139,69:139:4957:69:2443:-157.256,0,-383.665	1/1:364:0,364:0:0:364:12895:-1158.77,-109.575,0	1/1:245:0,245:0:0:245:8759:-786.004,-73.7524,0
chr02	1599027	.	A	T	515163	PASS	AB=0.515442;ABP=15.7525;AC=163;AF=0.867021;AN=188;AO=18655;CIGAR=1X;DP=21658;DPB=21658;DPRA=0;EPP=40511.8;EPPR=6506.57;GTI=0;LEN=1;MEANALT=1.06383;MQM=57.0957;MQMR=59.7896;NS=94;NUMALT=1;ODDS=5.74797;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=664403;QR=106793;RO=2995;RPL=11889;RPP=3057.99;RPPR=647.745;RPR=6766;RUN=1;SAF=11889;SAP=3057.99;SAR=6766;SRF=1969;SRP=647.745;SRR=1026;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:75:0,75:0:0:75:2630:-236.282,-22.5773,0	1/1:374:0,374:0:0:374:13311:-1196.59,-112.585,0	1/1:345:0,345:0:0:345:12320:-1106.92,-103.855,0	0/1:487:233,254:233:8311:254:8978:-658.718,0,-601.374	1/1:230:1,229:1:36:229:8127:-727.071,-65.6386,0	1/1:115:0,115:0:0:115:4105:-369.166,-34.6185,0	1/1:349:0,349:0:0:349:12430:-1117.04,-105.059,0	1/1:466:0,466:0:0:466:16635:-1493.41,-140.28,0	1/1:227:0,227:0:0:227:8071:-725.664,-68.3338,0	1/1:196:0,196:0:0:196:7036:-631.298,-59.0019,0	1/1:110:0,110:0:0:110:3931:-353.046,-33.1133,0	1/1:156:0,156:0:0:156:5574:-501.077,-46.9607,0	1/1:150:0,150:0:0:150:5321:-478.359,-45.1545,0	0/1:187:97,90:97:3455:90:3207:-231.955,0,-254.612	1/1:163:1,161:1:32:161:5718:-510.87,-45.9074,0	0/1:104:39,65:39:1400:65:2316:-177.109,0,-94.9601	1/1:148:0,148:0:0:148:5254:-472.499,-44.5524,0	1/1:144:0,144:0:0:144:5135:-461.605,-43.3483,0	1/1:95:0,95:0:0:95:3389:-304.354,-28.5979,0	0/1:533:274,259:274:9780:259:9253:-671.919,0,-719.697	0/1:302:139,162:139:4967:162:5772:-427.375,0,-356.061	1/1:173:1,172:1:36:172:6128:-547.325,-48.4799,0	1/1:162:0,162:0:0:162:5770:-518.396,-48.7669,0	0/1:273:138,135:138:4923:135:4830:-351.869,0,-361.041	1/1:191:0,191:0:0:191:6736:-605.894,-57.4967,0	1/1:739:0,739:0:0:739:26390:-2371.49,-222.461,0	1/1:560:0,560:0:0:560:19953:-1793.34,-168.577,0	1/1:97:0,97:0:0:97:3442:-309.567,-29.1999,0	1/1:631:0,631:0:0:631:22533:-2026.52,-189.95,0	1/1:238:0,238:0:0:238:8461:-760.052,-71.6451,0	0/1:236:103,133:103:3671:133:4741:-355.385,0,-259.551	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:75:0,75:0:0:75:2692:-242.072,-22.5773,0	1/1:14:0,14:0:0:14:500:-45.2004,-4.21442,0	1/1:25:0,25:0:0:25:886:-79.9913,-7.52575,0	0/1:38:25,13:25:900:13:468:-30.9965,0,-69.8819	1/1:392:0,392:0:0:392:13952:-1253.72,-118.004,0	0/1:348:164,184:164:5832:184:6585:-486.494,0,-420.226	0/1:190:94,96:94:3340:96:3398:-247.964,0,-243.501	1/1:10:0,10:0:0:10:356:-32.3534,-3.0103,0	1/1:345:0,345:0:0:345:12254:-1101.38,-103.855,0	1/1:88:0,88:0:0:88:3134:-281.516,-26.4906,0	1/1:302:0,299:0:0:299:10609:-952.424,-90.008,0	1/1:168:0,168:0:0:168:6005:-539.356,-50.573,0	0/1:146:63,83:63:2252:83:2964:-221.163,0,-158.987	1/1:231:1,230:1:36:230:8229:-736.244,-65.9397,0	0/1:362:163,199:163:5788:199:7127:-531.517,0,-411.575	1/1:475:0,475:0:0:475:16893:-1518.65,-142.989,0	1/1:200:0,200:0:0:200:7169:-643.049,-60.206,0	1/1:429:0,429:0:0:429:15265:-1371.3,-129.142,0	1/1:322:0,322:0:0:322:11452:-1029.42,-96.9317,0	1/1:15:0,15:0:0:15:540:-48.8754,-4.51545,0	1/1:363:0,363:0:0:363:12988:-1167.79,-109.274,0	1/1:94:0,94:0:0:94:3340:-300.664,-28.2968,0	1/1:23:0,23:0:0:23:824:-74.3636,-6.92369,0	1/1:372:0,372:0:0:372:13219:-1187.47,-111.983,0	0/1:140:69,70:69:2440:70:2474:-180.485,0,-177.669	0/1:16:6,10:6:216:10:345:-26.5642,0,-14.974	1/1:37:0,37:0:0:37:1324:-119.297,-11.1381,0	1/1:189:0,189:0:0:189:6725:-604.393,-56.8947,0	0/1:201:98,103:98:3495:103:3675:-269.871,0,-254.156	1/1:22:0,22:0:0:22:769:-69.4589,-6.62266,0	1/1:481:0,481:0:0:481:17173:-1543.85,-144.795,0	1/1:349:3,346:3:108:346:12346:-1098.76,-94.9843,0	1/1:143:4,139:4:135:139:4942:-431.926,-30.5648,0	1/1:217:0,217:0:0:217:7696:-691.651,-65.3235,0	0/1:481:259,221:259:9241:221:7842:-559.792,0,-686.764	1/1:214:2,212:2:68:212:7558:-673.281,-57.9627,0	1/1:90:0,90:0:0:90:3180:-285.852,-27.0927,0	1/1:260:0,260:0:0:260:9285:-834.693,-78.2678,0	0/1:195:81,114:81:2877:114:4001:-301.158,0,-200.445	1/1:45:0,45:0:0:45:1606:-144.502,-13.5464,0	1/1:212:2,210:2:72:210:7494:-666.634,-56.9816,0	0/1:164:87,77:87:3103:77:2759:-199.01,0,-230.111	1/1:355:0,355:0:0:355:12671:-1136.6,-106.866,0	1/1:492:0,492:0:0:492:17499:-1573.09,-148.107,0	1/1:258:0,258:0:0:258:9177:-823.867,-77.6657,0	1/1:288:0,288:0:0:288:10271:-921.962,-86.6966,0	1/1:19:0,19:0:0:19:684:-61.8735,-5.71957,0	1/1:350:1,349:1:36:349:12458:-1116.22,-101.762,0	0/1:296:124,172:124:4429:172:6040:-454.008,0,-309.623	0/1:483:215,268:215:7662:268:9582:-715.909,0,-543.933	1/1:243:0,243:0:0:243:8639:-775.379,-73.1503,0	1/1:148:0,148:0:0:148:5272:-472.931,-44.5524,0	0/1:202:106,96:106:3779:96:3382:-243.529,0,-279.477	0/1:296:136,160:136:4872:160:5659:-419.217,0,-349.504	0/1:100:42,58:42:1512:58:2072:-156.315,0,-106.272	1/1:161:0,161:0:0:161:5744:-516.327,-48.4658,0	1/1:143:0,143:0:0:143:5095:-457.905,-43.0473,0	1/1:98:0,97:0:0:97:3459:-310.599,-29.1999,0	0/1:165:81,84:81:2892:84:3003:-220.285,0,-210.826	0/1:207:142,65:142:5061:65:2252:-140.404,0,-393.322	1/1:367:0,367:0:0:367:13083:-1175.36,-110.478,0	1/1:241:1,240:1:36:240:8573:-765.666,-68.95,0
chr02	1599043	.	TAGAC	TAAAC,TAAAT	168944	PASS	AB=0.534161,0.457853;ABP=25.858,37.7885;AC=162,24;AF=0.870968,0.129032;AN=186;AO=6636,1040;CIGAR=2M1X2M,2M1X1M1X;DP=7731;DPB=7734.4;DPRA=0,1.21229;EPP=14412.9,2261.34;EPPR=18.2106;GTI=1;LEN=1,5;MEANALT=1.74194,2.55556;MQM=53.7185,59.4192;MQMR=60;NS=93;NUMALT=2;ODDS=2.57195;PAIRED=0,0;PAIREDR=0;PAO=3.66667,3.66667;PQA=127.333,127.333;PQR=127.333;PRO=3.66667;QA=236899,36659;QR=252;RO=7;RPL=0,0;RPP=14412.9,2261.34;RPPR=18.2106;RPR=6636,1040;RUN=1,1;SAF=0,0;SAP=14412.9,2261.34;SAR=6636,1040;SRF=0;SRP=18.2106;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,19,0:0:0:19,0:684,0:-61.2822,-5.71957,0,-61.2822,-5.71957,-61.2822	1/1:113:1,112,0:1:36:112,0:4005,0:-356.683,-30.4181,0,-356.984,-33.7154,-359.921	1/1:133:0,132,0:0:0:132,0:4691,0:-421.03,-39.736,0,-421.03,-39.736,-421.03	1/2:105:0,61,44:0:0:61,44:2172,1536:-301.578,-125.226,-106.863,-176.652,0,-163.407	1/1:88:0,87,1:0:0:87,1:3111,36:-279.295,-26.1896,0,-276.358,-22.8924,-276.057	1/1:51:0,51,0:0:0:51,0:1832,0:-164.882,-15.3525,0,-164.882,-15.3525,-164.882	1/1:101:0,101,0:0:0:101,0:3616,0:-324.734,-30.404,0,-324.734,-30.404,-324.734	1/1:168:0,165,0:0:0:165,0:5836,0:-524.273,-49.67,0,-524.273,-49.67,-524.273	1/1:93:2,90,0:2:72:90,0:3222,0:-283.09,-21.1329,0,-283.692,-27.0927,-289.567	1/1:95:0,95,0:0:0:95,0:3396,0:-304.525,-28.5979,0,-304.525,-28.5979,-304.525	1/1:70:0,70,0:0:0:70,0:2497,0:-224.291,-21.0721,0,-224.291,-21.0721,-224.291	1/1:88:0,86,0:0:0:86,0:3054,0:-274.466,-25.8886,0,-274.466,-25.8886,-274.466	1/1:78:0,78,0:0:0:78,0:2773,0:-249.462,-23.4803,0,-249.462,-23.4803,-249.462	1/2:113:0,58,53:0:0:58,53:2068,1871:-320.665,-152.464,-135.004,-168.324,0,-152.37	1/1:77:0,77,0:0:0:77,0:2748,0:-247.054,-23.1793,0,-247.054,-23.1793,-247.054	1/2:65:0,37,28:0:0:37,28:1332,992:-189.566,-81.1422,-70.0041,-108.78,0,-100.351	1/1:84:0,84,0:0:0:84,0:3004,0:-270.177,-25.2865,0,-270.177,-25.2865,-270.177	1/1:87:0,86,0:0:0:86,0:3064,0:-275.246,-25.8886,0,-275.246,-25.8886,-275.246	1/1:57:0,57,0:0:0:57,0:2028,0:-182.611,-17.1587,0,-182.611,-17.1587,-182.611	1/2:70:0,39,31:0:0:39,31:1404,1076:-202.143,-87.8129,-76.0728,-114.682,0,-105.35	1/2:139:0,72,66:0:0:72,66:2588,2293:-396.848,-186.407,-164.733,-210.58,0,-190.712	1/1:36:0,36,0:0:0:36,0:1288,0:-116.11,-10.8371,0,-116.11,-10.8371,-116.11	1/1:58:0,58,0:0:0:58,0:2069,0:-185.807,-17.4597,0,-185.807,-17.4597,-185.807	1/2:83:0,40,42:0:0:40,42:1430,1490:-237.618,-121.39,-109.349,-116.223,0,-103.58	1/1:55:0,55,0:0:0:55,0:1964,0:-176.791,-16.5567,0,-176.791,-16.5567,-176.791	1/1:235:0,235,0:0:0:235,0:8412,0:-755.706,-70.7421,0,-755.706,-70.7421,-755.706	1/1:147:0,147,0:0:0:147,0:5253,0:-471.981,-44.2514,0,-471.981,-44.2514,-471.981	1/1:42:0,41,0:0:0:41,0:1464,0:-131.524,-12.3422,0,-131.524,-12.3422,-131.524	1/1:64:1,63,0:1:36:63,0:2254,0:-199.179,-15.6676,0,-199.48,-18.9649,-202.417	1/1:107:0,107,0:0:0:107,0:3803,0:-341.118,-32.2102,0,-341.118,-32.2102,-341.118	1/2:79:0,37,42:0:0:37,42:1324,1487:-229.069,-121.481,-110.342,-107.943,0,-95.3002	.:.:.:.:.:.:.:.	1/1:25:0,24,0:0:0:24,0:844,0:-75.7147,-7.22472,0,-75.7147,-7.22472,-75.7147	1/1:5:0,5,0:0:0:5,0:180,0:-16.4302,-1.50515,0,-16.4302,-1.50515,-16.4302	1/1:5:0,5,0:0:0:5,0:176,0:-16.17,-1.50515,0,-16.17,-1.50515,-16.17	1/2:6:0,3,3:0:0:3,3:108,108:-17.9741,-9.17208,-8.26899,-9.1617,0,-8.25861	1/1:235:0,235,0:0:0:235,0:8362,0:-751.186,-70.7421,0,-751.186,-70.7421,-751.186	1/2:110:0,65,45:0:0:65,45:2321,1571:-316.844,-128.12,-108.553,-189.075,0,-175.529	1/2:110:2,51,52:2:72:51,52:1801,1822:-288.139,-142.333,-132.856,-140.556,0,-130.778	1/1:6:0,6,0:0:0:6,0:216,0:-19.7624,-1.80618,0,-19.7624,-1.80618,-19.7624	1/1:111:0,111,0:0:0:111,0:3969,0:-356.649,-33.4143,0,-356.649,-33.4143,-356.649	1/1:43:0,43,0:0:0:43,0:1536,0:-138.074,-12.9443,0,-138.074,-12.9443,-138.074	1/1:90:0,90,0:0:0:90,0:3220,0:-289.005,-27.0927,0,-289.005,-27.0927,-289.005	1/1:82:0,82,0:0:0:82,0:2935,0:-263.29,-24.6845,0,-263.29,-24.6845,-263.29	1/2:76:0,48,28:0:0:48,28:1699,990:-218.164,-80.6176,-66.1681,-137.54,0,-129.111	1/1:106:0,106,0:0:0:106,0:3812,0:-342.613,-31.9092,0,-342.613,-31.9092,-342.613	1/2:130:0,91,39:0:0:91,39:3232,1383:-375.889,-113.029,-85.6349,-263.215,0,-251.475	1/1:125:0,125,0:0:0:125,0:4475,0:-401.825,-37.6288,0,-401.825,-37.6288,-401.825	1/1:68:0,65,0:0:0:65,0:2311,0:-206.606,-19.567,0,-206.606,-19.567,-206.606	1/1:111:0,111,0:0:0:111,0:3988,0:-357.994,-33.4143,0,-357.994,-33.4143,-357.994	1/1:56:0,56,0:0:0:56,0:2012,0:-180.827,-16.8577,0,-180.827,-16.8577,-180.827	1/1:7:0,7,0:0:0:7,0:252,0:-22.9851,-2.10721,0,-22.9851,-2.10721,-22.9851	1/1:138:0,138,0:0:0:138,0:4924,0:-442.858,-41.5421,0,-442.858,-41.5421,-442.858	1/1:28:0,28,0:0:0:28,0:997,0:-89.663,-8.42884,0,-89.663,-8.42884,-89.663	1/1:6:0,6,0:0:0:6,0:216,0:-19.6657,-1.80618,0,-19.6657,-1.80618,-19.6657	1/1:123:0,123,0:0:0:123,0:4420,0:-396.8,-37.0267,0,-396.8,-37.0267,-396.8	1/2:51:0,23,27:0:0:23,27:828,961:-145.69,-78.2936,-71.3699,-67.4039,0,-59.2761	1/1:1:0,1,0:0:0:1,0:36,0:-3.59457,-0.30103,0,-3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chr02	1599185	.	C	G,T	128903	PASS	AB=0.378995,0.61999;ABP=253.682,249.495;AC=156,26;AF=0.857143,0.142857;AN=182;AO=4633,1246;CIGAR=1X,1X;DP=5887;DPB=5887;DPRA=0,1.37325;EPP=10046.1,2699.99;EPPR=20.3821;GTI=4;LEN=1,1;MEANALT=1.35165,2;MQM=59.9914,59.9815;MQMR=58.125;NS=91;NUMALT=2;ODDS=0.42889;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165432,44416;QR=273;RO=8;RPL=4633,1246;RPP=10063.4,2708.66;RPPR=20.3821;RPR=0,0;RUN=1,1;SAF=2,1;SAP=10046.1,2699.99;SAR=4631,1245;SRF=0;SRP=20.3821;SRR=8;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36,0:0:0:36,0:1296,0:-116.944,-10.8371,0,-116.944,-10.8371,-116.944	1/1:49:0,49,0:0:0:49,0:1759,0:-158.594,-14.7505,0,-158.594,-14.7505,-158.594	1/1:93:0,93,0:0:0:93,0:3298,0:-297.04,-27.9958,0,-297.04,-27.9958,-297.04	1/2:208:0,73,135:0:0:73,135:2620,4833:-608.199,-394.485,-372.51,-214.072,0,-173.433	1/1:50:0,50,0:0:0:50,0:1776,0:-160.123,-15.0515,0,-160.123,-15.0515,-160.123	1/1:28:0,28,0:0:0:28,0:996,0:-89.9543,-8.42884,0,-89.9543,-8.42884,-89.9543	1/1:53:0,53,0:0:0:53,0:1876,0:-169.119,-15.9546,0,-169.119,-15.9546,-169.119	1/1:87:0,87,0:0:0:87,0:3105,0:-279.676,-26.1896,0,-279.676,-26.1896,-279.676	1/1:76:0,76,0:0:0:76,0:2702,0:-243.424,-22.8783,0,-243.424,-22.8783,-243.424	1/1:41:0,41,0:0:0:41,0:1456,0:-131.335,-12.3422,0,-131.335,-12.3422,-131.335	1/1:31:0,31,0:0:0:31,0:1103,0:-99.5798,-9.33193,0,-99.5798,-9.33193,-99.5798	1/1:80:0,80,0:0:0:80,0:2868,0:-258.356,-24.0824,0,-258.356,-24.0824,-258.356	1/1:58:1,57,0:1:36:57,0:2035,0:-179.823,-13.8615,0,-180.124,-17.1587,-183.062	1/2:35:0,16,19:0:0:16,19:568,669:-101.096,-54.8144,-49.9979,-46.6354,0,-40.9158	1/1:57:0,57,0:0:0:57,0:2040,0:-183.872,-17.1587,0,-183.872,-17.1587,-183.872	1/2:47:0,20,27:0:0:20,27:716,957:-136.708,-78.3169,-72.2963,-58.7471,0,-50.6193	1/1:16:0,16,0:0:0:16,0:568,0:-51.4519,-4.81648,0,-51.4519,-4.81648,-51.4519	1/1:25:0,25,0:0:0:25,0:888,0:-80.239,-7.52575,0,-80.239,-7.52575,-80.239	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	1/2:174:0,44,130:0:0:44,130:1576,4656:-508.596,-380.068,-366.823,-128.886,0,-89.7523	1/2:146:0,54,92:0:0:54,92:1928,3248:-422.031,-264.845,-248.59,-157.541,0,-129.846	1/1:77:0,77,0:0:0:77,0:2764,0:-249.001,-23.1793,0,-249.001,-23.1793,-249.001	1/1:80:1,79,0:1:21:79,0:2817,0:-251.671,-21.9841,0,-251.972,-23.7814,-253.557	1/2:87:0,22,65:0:0:22,65:788,2321:-253.846,-189.581,-182.959,-64.6221,0,-45.0552	1/1:75:0,75,0:0:0:75,0:2680,0:-241.445,-22.5773,0,-241.445,-22.5773,-241.445	1/1:104:0,104,0:0:0:104,0:3728,0:-335.721,-31.3071,0,-335.721,-31.3071,-335.721	1/1:169:0,167,2:0:0:167,2:5953,72:-535.519,-50.272,0,-529.644,-44.0373,-529.042	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/1:129:0,129,0:0:0:129,0:4632,0:-417.041,-38.8329,0,-417.041,-38.8329,-417.041	1/1:43:0,43,0:0:0:43,0:1510,0:-136.189,-12.9443,0,-136.189,-12.9443,-136.189	1/2:65:0,20,45:0:0:20,45:716,1611:-190.122,-131.733,-125.712,-58.7471,0,-45.2008	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	.:.:.:.:.:.:.:.	1/1:11:0,11,0:0:0:11,0:382,0:-34.7124,-3.31133,0,-34.7124,-3.31133,-34.7124	2/2:13:0,1,12:0:0:1,12:32,428:-38.5361,-35.9605,-35.6595,-3.61236,-0.714077,0	1/1:145:0,145,0:0:0:145,0:5184,0:-466.696,-43.6494,0,-466.696,-43.6494,-466.696	1/2:81:0,36,45:0:0:36,45:1288,1578:-233.792,-128.76,-117.923,-105.387,0,-91.8402	1/2:27:0,14,13:0:0:14,13:495,468:-78.8581,-38.5463,-34.3318,-40.6686,0,-36.7552	.:.:.:.:.:.:.:.	1/1:69:0,69,0:0:0:69,0:2461,0:-221.743,-20.7711,0,-221.743,-20.7711,-221.743	1/1:39:0,38,1:0:0:38,1:1360,36:-122.341,-11.4391,0,-119.403,-8.1419,-119.102	1/1:89:0,89,0:0:0:89,0:3200,0:-288.222,-26.7917,0,-288.222,-26.7917,-288.222	1/1:44:0,44,0:0:0:44,0:1576,0:-142.132,-13.2453,0,-142.132,-13.2453,-142.132	1/2:54:0,26,28:0:0:26,28:915,1004:-156.73,-82.247,-74.4202,-74.8382,0,-66.4094	1/1:93:0,93,0:0:0:93,0:3332,0:-300.097,-27.9958,0,-300.097,-27.9958,-300.097	1/2:104:0,34,70:0:0:34,70:1224,2496:-303.678,-203.805,-193.57,-100.232,0,-79.1599	1/1:130:0,130,0:0:0:130,0:4632,0:-417.045,-39.1339,0,-417.045,-39.1339,-417.045	1/1:68:0,68,0:0:0:68,0:2428,0:-218.776,-20.47,0,-218.776,-20.47,-218.776	1/1:67:0,66,1:0:0:66,1:2352,36:-211.58,-19.868,0,-208.642,-16.5707,-208.341	1/1:91:0,91,0:0:0:91,0:3254,0:-293.081,-27.3937,0,-293.081,-27.3937,-293.081	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:71:0,71,0:0:0:71,0:2536,0:-228.491,-21.3731,0,-228.491,-21.3731,-228.491	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:52:0,52,0:0:0:52,0:1860,0:-167.68,-15.6536,0,-167.68,-15.6536,-167.68	1/2:71:0,29,42:0:0:29,42:1036,1496:-206.759,-122.291,-113.561,-84.824,0,-72.1808	1/2:6:0,4,2:0:0:4,2:144,72:-17.9843,-6.23466,-5.03054,-12.1095,0,-11.5074	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:45:0,45,0:0:0:45,0:1610,0:-14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chr02	1599791	.	CA	TG,CG	137130	PASS	AB=0.510662,0.48541;ABP=4.7699,6.30528;AC=162,26;AF=0.861702,0.138298;AN=188;AO=5396,874;CIGAR=2X,1M1X;DP=6289;DPB=6289.5;DPRA=33.8011,1.07944;EPP=11720.3,1900.88;EPPR=0;GTI=1;LEN=2,1;MEANALT=1.50538,2.23333;MQM=59.5582,59.9371;MQMR=0;NS=94;NUMALT=2;ODDS=2.78991;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=190947,30831;QR=0;RO=0;RPL=5396,874;RPP=11720.3,1900.88;RPPR=0;RPR=0,0;RUN=1,1;SAF=5396,874;SAP=11720.3,1900.88;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,30,0:0:0:30,0:1072,0:-96.4784,-9.0309,0,-96.4784,-9.0309,-96.4784	1/1:24:0,24,0:0:0:24,0:856,0:-77.3531,-7.22472,0,-77.3531,-7.22472,-77.3531	1/1:62:0,62,0:0:0:62,0:2217,0:-199.423,-18.6639,0,-199.423,-18.6639,-199.423	1/2:123:0,70,53:0:0:70,53:2487,1883:-356.445,-153.793,-132.721,-203.006,0,-187.052	1/1:32:0,31,1:0:0:31,1:1116,36:-100.392,-9.33193,0,-97.4545,-6.03469,-97.1534	1/1:23:0,22,0:0:0:22,0:786,0:-70.7928,-6.62266,0,-70.7928,-6.62266,-70.7928	1/1:118:0,116,0:0:0:116,0:4154,0:-373.593,-34.9195,0,-373.593,-34.9195,-373.593	1/1:88:0,88,0:0:0:88,0:3107,0:-279.525,-26.4906,0,-279.525,-26.4906,-279.525	1/1:23:0,23,0:0:0:23,0:802,0:-72.4391,-6.92369,0,-72.4391,-6.92369,-72.4391	1/1:85:0,85,0:0:0:85,0:3022,0:-272.044,-25.5876,0,-272.044,-25.5876,-272.044	1/1:36:0,36,0:0:0:36,0:1273,0:-114.86,-10.8371,0,-114.86,-10.8371,-114.86	1/1:110:0,110,0:0:0:110,0:3890,0:-350.264,-33.1133,0,-350.264,-33.1133,-350.264	1/1:43:0,43,0:0:0:43,0:1506,0:-135.816,-12.9443,0,-135.816,-12.9443,-135.816	1/2:64:0,33,31:0:0:33,31:1168,1074:-182.773,-87.6346,-77.7006,-95.4884,0,-86.1565	1/1:43:0,43,0:0:0:43,0:1494,0:-134.631,-12.9443,0,-134.631,-12.9443,-134.631	1/2:38:0,13,25:0:0:13,25:464,849:-107.026,-69.193,-65.2796,-38.1843,0,-30.6586	1/1:43:0,43,0:0:0:43,0:1527,0:-137.684,-12.9443,0,-137.684,-12.9443,-137.684	1/1:30:0,30,0:0:0:30,0:1071,0:-96.701,-9.0309,0,-96.701,-9.0309,-96.701	1/1:33:0,33,0:0:0:33,0:1175,0:-106.041,-9.93399,0,-106.041,-9.93399,-106.041	1/2:159:0,81,77:0:0:81,77:2864,2706:-453.409,-220.242,-195.859,-233.159,0,-209.98	1/2:48:0,28,19:0:0:28,19:1002,675:-136.643,-55.0357,-46.6069,-81.6416,0,-75.922	1/1:101:0,100,0:0:0:100,0:3539,0:-318.356,-30.103,0,-318.356,-30.103,-318.356	1/1:66:0,66,0:0:0:66,0:2304,0:-207.509,-19.868,0,-207.509,-19.868,-207.509	1/2:77:0,46,30:0:0:46,30:1609,1057:-217.042,-86.1461,-72.2987,-130.984,0,-121.954	1/1:40:0,40,0:0:0:40,0:1411,0:-127.266,-12.0412,0,-127.266,-12.0412,-127.266	1/1:204:0,204,0:0:0:204,0:7218,0:-649.659,-61.4101,0,-649.659,-61.4101,-649.659	1/1:249:0,248,0:0:0:248,0:8824,0:-793.47,-74.6554,0,-793.47,-74.6554,-793.47	1/1:20:0,20,0:0:0:20,0:714,0:-64.5875,-6.0206,0,-64.5875,-6.0206,-64.5875	1/1:271:0,271,0:0:0:271,0:9651,0:-868.32,-81.5791,0,-868.32,-81.5791,-868.32	1/1:55:0,55,0:0:0:55,0:1968,0:-177.375,-16.5567,0,-177.375,-16.5567,-177.375	1/2:103:0,63,40:0:0:63,40:2233,1420:-297.962,-116.056,-97.0913,-182.261,0,-170.22	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:14:0,14,0:0:0:14,0:491,0:-44.5162,-4.21442,0,-44.5162,-4.21442,-44.5162	1/1:3:0,3,0:0:0:3,0:108,0:-10.0667,-0.90309,0,-10.0667,-0.90309,-10.0667	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/1:200:0,200,0:0:0:200,0:7089,0:-638.061,-60.206,0,-638.061,-60.206,-638.061	1/2:93:0,50,43:0:0:50,43:1776,1512:-268.125,-123.426,-108.375,-145.052,0,-132.108	1/2:37:0,18,19:0:0:18,19:631,653:-104.685,-53.3697,-47.9512,-51.6621,0,-45.9425	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:76:0,76,0:0:0:76,0:2681,0:-241.437,-22.8783,0,-241.437,-22.8783,-241.437	1/1:33:0,33,0:0:0:33,0:1156,0:-104.336,-9.93399,0,-104.336,-9.93399,-104.336	1/1:97:0,96,0:0:0:96,0:3360,0:-302.334,-28.8989,0,-302.334,-28.8989,-302.334	1/1:47:0,47,0:0:0:47,0:1643,0:-148.154,-14.1484,0,-148.154,-14.1484,-148.154	1/2:43:0,24,19:0:0:24,19:864,647:-123.324,-52.8218,-45.5971,-70.8509,0,-65.1313	1/1:77:0,77,0:0:0:77,0:2742,0:-247.014,-23.1793,0,-247.014,-23.1793,-247.014	1/2:78:0,24,54:0:0:24,54:845,1913:-224.801,-156.032,-148.807,-69.1217,0,-52.8661	1/1:127:0,127,0:0:0:127,0:4475,0:-402.83,-38.2308,0,-402.83,-38.2308,-402.83	1/1:72:0,72,0:0:0:72,0:2540,0:-228.826,-21.6742,0,-228.826,-21.6742,-228.826	1/1:95:0,95,0:0:0:95,0:3382,0:-304.233,-28.5979,0,-304.233,-28.5979,-304.233	1/1:119:0,119,0:0:0:119,0:4180,0:-376.277,-35.8226,0,-376.277,-35.8226,-376.277	1/1:9:0,9,0:0:0:9,0:322,0:-29.3218,-2.70927,0,-29.3218,-2.70927,-29.3218	1/1:77:0,77,0:0:0:77,0:2768,0:-249.3,-23.1793,0,-249.3,-23.1793,-249.3	1/1:52:0,52,0:0:0:52,0:1824,0:-164.426,-15.6536,0,-164.426,-15.6536,-164.426	1/1:11:0,11,0:0:0:11,0:391,0:-35.5293,-3.31133,0,-35.5293,-3.31133,-35.5293	1/1:69:0,68,0:0:0:68,0:2398,0:-215.695,-20.47,0,-215.695,-20.47,-215.695	1/2:34:0,13,21:0:0:13,21:457,748:-98.5148,-61.3237,-57.4103,-37.5443,0,-31.2226	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:9:0,9,0:0:0:9,0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chr02	1599856	.	C	T	86927.8	PASS	AB=0.511798;ABP=4.49623;AC=161;AF=0.865591;AN=186;AO=3933;CIGAR=1X;DP=4535;DPB=4535;DPRA=0;EPP=8543.41;EPPR=1310.24;GTI=1;LEN=1;MEANALT=1;MQM=58.1548;MQMR=39.495;NS=93;NUMALT=1;ODDS=1.19536;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140625;QR=21384;RO=602;RPL=0;RPP=8543.41;RPPR=1310.24;RPR=3933;RUN=1;SAF=0;SAP=8543.41;SAR=3933;SRF=0;SRP=1310.24;SRR=602;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:468:-42.3923,-3.91339,0	1/1:78:0,78:0:0:78:2788:-250.538,-23.4803,0	1/1:116:0,116:0:0:116:4138:-372.137,-34.9195,0	0/1:75:41,34:41:1451:34:1205:-86.1761,0,-103.947	1/1:42:0,42:0:0:42:1504:-135.653,-12.6433,0	1/1:19:0,19:0:0:19:684:-61.8177,-5.71957,0	1/1:53:0,53:0:0:53:1891:-170.372,-15.9546,0	1/1:44:0,44:0:0:44:1562:-140.702,-13.2453,0	1/1:45:0,45:0:0:45:1592:-143.418,-13.5464,0	1/1:51:0,51:0:0:51:1823:-163.9,-15.3525,0	1/1:22:0,22:0:0:22:788:-70.3404,-6.62266,0	1/1:41:0,41:0:0:41:1460:-131.546,-12.3422,0	1/1:49:0,49:0:0:49:1748:-157.507,-14.7505,0	0/1:37:15,22:15:514:22:792:-60.3396,0,-33.4437	1/1:32:0,32:0:0:32:1144:-103.259,-9.63296,0	0/1:30:10,20:10:347:20:690:-53.3884,0,-21.3249	1/1:37:0,37:0:0:37:1332:-120.036,-11.1381,0	1/1:35:0,35:0:0:35:1260:-113.674,-10.5361,0	1/1:30:0,30:0:0:30:1076:-96.9055,-9.0309,0	0/1:43:13,30:13:453:30:1072:-83.8482,0,-25.0256	0/1:61:24,37:24:852:37:1328:-100.919,0,-54.5888	1/1:57:0,57:0:0:57:2030:-182.489,-17.1587,0	1/1:48:0,48:0:0:48:1728:-155.774,-14.4494,0	0/1:46:23,23:23:811:23:824:-60.4363,0,-55.4856	1/1:39:0,39:0:0:39:1387:-125.09,-11.7402,0	1/1:135:0,135:0:0:135:4836:-434.859,-40.6391,0	1/1:118:0,118:0:0:118:4233:-379.703,-35.5215,0	1/1:15:0,15:0:0:15:540:-48.8646,-4.51545,0	1/1:111:0,111:0:0:111:3980:-357.954,-33.4143,0	1/1:92:0,92:0:0:92:3288:-295.884,-27.6948,0	0/1:55:30,25:30:1067:25:880:-62.6212,0,-76.7292	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.2403,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	1/1:8:0,8:0:0:8:288:-26.2601,-2.40824,0	0/1:7:5,2:5:180:2:72:-4.7276,0,-13.2851	1/1:113:0,113:0:0:113:4050:-364.418,-34.0164,0	0/1:83:51,32:51:1828:32:1146:-78.4188,0,-128.712	0/1:26:11,15:11:392:15:540:-40.9554,0,-24.748	.:.:.:.:.:.:.:.	1/1:90:0,90:0:0:90:3232:-291.025,-27.0927,0	1/1:89:0,89:0:0:89:3181:-284.578,-26.7917,0	1/1:91:0,91:0:0:91:3260:-293.526,-27.3937,0	1/1:39:0,39:0:0:39:1392:-125.389,-11.7402,0	0/1:37:15,22:15:525:22:788:-60.0842,0,-35.0143	1/1:71:0,71:0:0:71:2521:-226.351,-21.3731,0	0/1:40:21,19:21:748:19:684:-49.8318,0,-48.9681	1/1:66:0,66:0:0:66:2363:-211.794,-19.868,0	1/1:69:0,69:0:0:69:2463:-221.698,-20.7711,0	1/1:42:0,42:0:0:42:1504:-135.226,-12.6433,0	1/1:138:0,138:0:0:138:4911:-441.339,-41.5421,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:42:0,42:0:0:42:1508:-135.92,-12.6433,0	1/1:19:0,19:0:0:19:684:-61.8748,-5.71957,0	1/1:13:0,13:0:0:13:445:-40.3423,-3.91339,0	1/1:58:0,58:0:0:58:2084:-187.824,-17.4597,0	0/1:42:18,24:18:644:24:846:-63.8092,0,-43.3537	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	1/1:8:0,8:0:0:8:288:-26.2572,-2.40824,0	1/1:24:0,24:0:0:24:856:-77.3253,-7.22472,0	0/1:57:39,18:39:1395:18:644:-41.1319,0,-103.871	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:80:0,80:0:0:80:2876:-258.721,-24.0824,0	1/1:65:1,64:1:36:64:2296:-203.093,-15.9687,0	0/1:21:3,18:3:108:18:644:-51.9321,0,-3.42748	1/1:27:0,27:0:0:27:964:-86.9889,-8.12781,0	0/1:58:29,29:29:1021:29:1040:-76.3004,0,-71.4975	1/1:68:0,68:0:0:68:2444:-219.877,-20.47,0	1/1:14:1,13:1:36:13:464:-38.4947,-0.647608,0	1/1:32:0,32:0:0:32:1132:-101.929,-9.63296,0	0/1:48:30,18:30:1072:18:639:-43.2571,0,-75.5851	1/1:9:0,9:0:0:9:324:-29.4951,-2.70927,0	1/1:67:0,67:0:0:67:2394:-215.36,-20.169,0	0/1:29:5,24:5:176:24:864:-69.3294,0,-6.41822	1/1:60:0,60:0:0:60:2148:-193.245,-18.0618,0	1/1:67:0,67:0:0:67:2412:-217.183,-20.169,0	1/1:61:0,61:0:0:61:2172:-195.41,-18.3628,0	1/1:60:0,60:0:0:60:2130:-191.22,-18.0618,0	1/1:5:0,5:0:0:5:180:-16.5474,-1.50515,0	1/1:53:0,53:0:0:53:1908:-171.801,-15.9546,0	0/1:37:10,27:10:360:27:972:-76.6343,0,-18.5043	0/1:126:51,75:51:1827:75:2669:-202.427,0,-120.458	1/1:64:0,64:0:0:64:2287:-205.795,-19.2659,0	1/1:39:0,39:0:0:39:1379:-124.358,-11.7402,0	0/1:47:26,21:26:924:21:756:-54.2188,0,-65.5967	0/1:86:58,28:58:2058:28:1008:-65.1119,0,-153.981	0/1:30:16,14:16:572:14:500:-36.293,0,-39.196	1/1:56:0,56:0:0:56:2006:-180.723,-16.8577,0	1/1:37:0,37:0:0:37:1332:-119.982,-11.1381,0	1/1:30:0,30:0:0:30:1060:-95.7109,-9.0309,0	0/1:65:31,34:31:1095:34:1224:-90.7991,0,-73.5592	0/1:43:25,18:25:892:18:648:-45.6851,0,-64.5253	1/1:48:0,48:0:0:48:1708:-153.844,-14.4494,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0
chr02	1599914	.	GCGTT	GCGCT,GT	96883.1	PASS	AB=0.536878,0.463122;ABP=16.7841,16.7841;AC=161,25;AF=0.865591,0.134409;AN=186;AO=3875,541;CIGAR=3M1X1M,1M3D1M;DP=4420;DPB=4095.4;DPRA=0,1.00822;EPP=8417.47,1177.78;EPPR=0;GTI=2;LEN=1,3;MEANALT=1.30108,2;MQM=58.1938,39.1571;MQMR=0;NS=93;NUMALT=2;ODDS=3.74333;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=138587,18506;QR=0;RO=0;RPL=3875,541;RPP=8417.47,1177.78;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8417.47,1177.78;SAR=3875,541;SRF=0;SRP=0;SRR=0;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:464,0:-42.0307,-3.91339,0,-42.0307,-3.91339,-42.0307	1/1:77:0,76,1:0:0:76,1:2715,36:-243.676,-22.8783,0,-240.752,-19.5963,-240.451	1/1:118:0,118,0:0:0:118,0:4225,0:-380.007,-35.5215,0,-380.007,-35.5215,-380.007	1/2:74:0,36,38:0:0:36,38:1280,1295:-206.379,-102.075,-91.2377,-104.648,0,-93.2085	1/1:41:0,41,0:0:0:41,0:1476,0:-133.133,-12.3422,0,-133.133,-12.3422,-133.133	1/1:19:0,19,0:0:0:19,0:680,0:-61.4571,-5.71957,0,-61.4571,-5.71957,-61.4571	1/1:52:0,52,0:0:0:52,0:1860,0:-167.579,-15.6536,0,-167.579,-15.6536,-167.579	1/1:42:0,42,0:0:0:42,0:1497,0:-134.868,-12.6433,0,-134.868,-12.6433,-134.868	1/1:41:0,41,0:0:0:41,0:1453,0:-130.915,-12.3422,0,-130.915,-12.3422,-130.915	1/1:51:0,51,0:0:0:51,0:1830,0:-164.53,-15.3525,0,-164.53,-15.3525,-164.53	1/1:21:0,21,0:0:0:21,0:747,0:-67.2597,-6.32163,0,-67.2597,-6.32163,-67.2597	1/1:40:0,40,0:0:0:40,0:1425,0:-128.128,-12.0412,0,-128.128,-12.0412,-128.128	1/1:49:0,49,0:0:0:49,0:1756,0:-158.224,-14.7505,0,-158.224,-14.7505,-158.224	1/2:34:0,21,13:0:0:21,13:752,403:-92.636,-31.4008,-25.0792,-61.5566,0,-57.6432	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1422,-9.0309,0,-97.1422,-9.0309,-97.1422	1/2:28:0,19,9:0:0:19,9:684,305:-79.7116,-23.8765,-18.1569,-56.1708,0,-53.4615	1/1:37:0,37,0:0:0:37,0:1324,0:-119.317,-11.1381,0,-119.317,-11.1381,-119.317	1/1:36:0,36,0:0:0:36,0:1292,0:-116.553,-10.8371,0,-116.553,-10.8371,-116.553	1/1:29:0,29,0:0:0:29,0:1040,0:-93.6676,-8.72987,0,-93.6676,-8.72987,-93.6676	1/2:43:0,31,12:0:0:31,12:1116,424:-122.216,-31.126,-21.7941,-91.4198,0,-87.8074	1/2:59:0,37,22:0:0:37,22:1317,753:-165.259,-58.0397,-46.9016,-107.556,0,-100.933	1/1:55:0,52,0:0:0:52,0:1868,0:-167.661,-15.6536,0,-167.661,-15.6536,-167.661	1/1:45:0,45,0:0:0:45,0:1605,0:-144.711,-13.5464,0,-144.711,-13.5464,-144.711	1/2:45:0,22,23:0:0:22,23:788,788:-125.045,-60.9323,-54.3096,-64.4552,0,-57.5316	1/1:39:0,39,0:0:0:39,0:1373,0:-123.829,-11.7402,0,-123.829,-11.7402,-123.829	1/1:134:0,134,0:0:0:134,0:4793,0:-431.01,-40.338,0,-431.01,-40.338,-431.01	1/1:117:0,117,0:0:0:117,0:4180,0:-375.492,-35.2205,0,-375.492,-35.2205,-375.492	1/1:14:0,14,0:0:0:14,0:489,0:-44.3017,-4.21442,0,-44.3017,-4.21442,-44.3017	1/1:109:0,109,0:0:0:109,0:3908,0:-351.635,-32.8123,0,-351.635,-32.8123,-351.635	1/1:90:0,90,0:0:0:90,0:3200,0:-287.946,-27.0927,0,-287.946,-27.0927,-287.946	1/2:53:0,25,28:0:0:25,28:891,928:-145.389,-73.0499,-65.5242,-72.6781,0,-64.2493	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:4:0,4,0:0:0:4,0:140,0:-12.8929,-1.20412,0,-12.8929,-1.20412,-12.8929	1/1:1:0,1,0:0:0:1,0:36,0:-3.59727,-0.30103,0,-3.59727,-0.30103,-3.59727	1/1:8:0,8,0:0:0:8,0:288,0:-26.2601,-2.40824,0,-26.2601,-2.40824,-26.2601	1/2:6:0,2,4:0:0:2,4:72,144:-17.058,-11.1766,-10.5746,-6.23275,0,-5.02863	1/1:113:0,113,0:0:0:113,0:4040,0:-363.248,-34.0164,0,-363.248,-34.0164,-363.248	1/2:80:0,33,47:0:0:33,47:1185,1577:-215.35,-119.044,-109.11,-96.6461,0,-82.4977	1/2:25:0,15,10:0:0:15,10:540,344:-69.9651,-26.0339,-21.5184,-44.2662,0,-41.2559	.:.:.:.:.:.:.:.	1/1:92:0,92,0:0:0:92,0:3280,0:-295.074,-27.6948,0,-295.074,-27.6948,-295.074	1/1:84:0,84,0:0:0:84,0:2998,0:-269.348,-25.2865,0,-269.348,-25.2865,-269.348	1/1:90:0,90,0:0:0:90,0:3236,0:-291.365,-27.0927,0,-291.365,-27.0927,-291.365	1/1:39:0,39,0:0:0:39,0:1403,0:-126.109,-11.7402,0,-126.109,-11.7402,-126.109	1/2:36:0,22,14:0:0:22,14:792,481:-102.748,-38.1314,-31.5087,-64.9605,0,-60.7461	1/1:66:0,66,0:0:0:66,0:2368,0:-212.805,-19.868,0,-212.805,-19.868,-212.805	1/2:37:0,19,18:0:0:19,18:684,606:-100.423,-44.6026,-38.883,-56.1535,0,-50.7349	1/1:68:0,68,0:0:0:68,0:2412,0:-216.724,-20.47,0,-216.724,-20.47,-216.724	1/1:70:0,70,0:0:0:70,0:2516,0:-226.561,-21.0721,0,-226.561,-21.0721,-226.561	1/1:40:0,40,0:0:0:40,0:1437,0:-129.357,-12.0412,0,-129.357,-12.0412,-129.357	1/1:139:0,139,0:0:0:139,0:4955,0:-445.433,-41.8432,0,-445.433,-41.8432,-445.433	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:42:0,42,0:0:0:42,0:1508,0:-135.92,-12.6433,0,-135.92,-12.6433,-135.92	1/1:18:0,18,0:0:0:18,0:633,0:-57.2795,-5.41854,0,-57.2795,-5.41854,-57.2795	1/1:13:0,13,0:0:0:13,0:464,0:-42.0631,-3.91339,0,-42.0631,-3.91339,-42.0631	1/1:59:0,59,0:0:0:59,0:2120,0:-191.044,-17.7608,0,-191.044,-17.7608,-191.044	1/2:41:0,25,16:0:0:25,16:892,537:-115.288,-42.5674,-35.0417,-73.0587,0,-68.2422	1/1:1:0,1,0:0:0:1,0:36,0:-3.59727,-0.30103,0,-3.59727,-0.30103,-3.59727	1/1:8:0,8,0:0:0:8,0:288,0:-26.2572,-2.40824,0,-26.2572,-2.40824,-26.2572	1/1:24:0,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chr02	1651046	.	T	C	28298.6	PASS	AB=0.492276;ABP=4.78811;AC=25;AF=0.132979;AN=188;AO=1706;CIGAR=1X;DP=12400;DPB=12400;DPRA=1.0418;EPP=3707.54;EPPR=23105.4;GTI=0;LEN=1;MEANALT=1;MQM=59.9672;MQMR=59.9881;NS=94;NUMALT=1;ODDS=3.1352;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60912;QR=383279;RO=10691;RPL=1706;RPP=3707.54;RPPR=23105.4;RPR=0;RUN=1;SAF=0;SAP=3707.54;SAR=1706;SRF=0;SRP=23218.2;SRR=10691;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:222:222,0:222:7961:0:0:0,-66.8287,-716.507	0/0:161:161,0:161:5746:0:0:0,-48.4658,-517.254	0/1:324:203,121:203:7216:121:4327:-292.058,0,-551.96	0/0:94:93,1:93:3336:1:36:0,-24.6985,-296.859	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:247:247,0:247:8822:0:0:0,-74.3544,-793.966	0/0:228:228,0:228:8196:0:0:0,-68.6348,-737.648	0/0:165:165,0:165:5920:0:0:0,-49.6699,-532.907	0/0:183:183,0:183:6523:0:0:0,-55.0885,-587.151	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:64:30,34:30:1080:34:1220:-90.8409,0,-78.2473	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:55:17,38:17:612:38:1350:-105.242,0,-38.8568	0/0:57:56,1:56:2016:1:36:0,-13.5604,-178.115	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/1:377:156,221:156:5578:221:7909:-598.345,0,-388.652	0/1:169:110,59:110:3933:59:2101:-138.484,0,-303.287	0/0:163:163,0:163:5852:0:0:0,-49.0679,-526.79	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/1:189:95,94:95:3416:94:3363:-245.991,0,-250.758	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:445:444,0:444:15887:0:0:0,-133.657,-1429.15	0/0:276:276,0:276:9901:0:0:0,-83.0843,-891.026	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:447:447,0:447:16049:0:0:0,-134.56,-1444.08	0/0:154:154,0:154:5532:0:0:0,-46.3586,-498.003	0/1:157:73,84:73:2613:84:2995:-222.52,0,-188.154	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:182:182,0:182:6544:0:0:0,-54.7875,-589.039	0/1:179:105,74:105:3760:74:2638:-183.758,0,-284.715	0/1:83:31,52:31:1116:52:1864:-143.054,0,-75.7662	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:211:211,0:211:7531:0:0:0,-63.5173,-677.458	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.995	0/0:98:97,1:97:3480:1:36:0,-25.9027,-309.726	0/1:61:27,34:27:972:34:1200:-89.94,0,-69.4351	0/0:127:127,0:127:4549:0:0:0,-38.2308,-409.574	0/1:163:70,93:70:2512:93:3311:-249.14,0,-177.264	0/0:274:273,0:273:9774:0:0:0,-82.1812,-879.39	0/0:143:143,0:143:5136:0:0:0,-43.0473,-462.377	0/0:305:305,0:305:10960:0:0:0,-91.8141,-986.29	0/0:234:234,0:234:8412:0:0:0,-70.441,-757.079	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:174:174,0:174:6248:0:0:0,-52.3792,-562.412	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.747	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:220:220,0:220:7867:0:0:0,-66.2266,-708.048	0/1:46:27,19:27:968:19:661:-45.9642,0,-73.59	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:112:112,0:112:3998:0:0:0,-33.7154,-359.817	0/1:137:59,78:59:2116:78:2796:-210.639,0,-149.468	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:373:372,0:372:13341:0:0:0,-111.983,-1200.12	0/0:237:237,0:237:8486:0:0:0,-71.3441,-763.737	0/0:121:116,5:116:4149:5:180:0,-19.8726,-357.04	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.92	0/1:205:101,104:101:3621:104:3679:-269.601,0,-264.382	0/0:135:132,3:132:4729:3:108:0,-30.5639,-415.691	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:109:108,1:108:3880:1:36:0,-29.214,-345.794	0/1:77:40,37:40:1440:37:1317:-95.6505,0,-106.718	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:171:171,0:171:6099:0:0:0,-51.4761,-549.008	0/1:86:43,43:43:1544:43:1531:-112.193,0,-113.364	0/0:153:153,0:153:5504:0:0:0,-46.0576,-495.483	0/0:205:205,0:205:7337:0:0:0,-61.7111,-660.377	0/0:105:104,1:104:3744:1:36:0,-28.0099,-333.56	0/0:278:275,3:275:9857:3:108:0,-73.6112,-876.994	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:175:174,1:174:6248:1:36:0,-49.082,-558.81	0/1:210:100,110:100:3596:110:3942:-291.755,0,-260.629	0/1:338:217,121:217:7777:121:4317:-286.958,0,-598.209	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.746	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:90:47,43:47:1692:43:1544:-112.16,0,-125.474	0/1:158:73,85:73:2616:85:3041:-226.355,0,-188.125	0/1:68:38,30:38:1368:30:1080:-77.0432,0,-102.951	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:89:37,52:37:1332:52:1872:-141.967,0,-93.3907	0/1:88:35,53:35:1252:53:1882:-143.168,0,-86.4944	0/0:242:242,0:242:8688:0:0:0,-72.8493,-781.895	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418
chr02	1750015	.	T	C	13416.6	PASS	AB=0.371678;ABP=363.581;AC=24;AF=0.12766;AN=188;AO=954;CIGAR=1X;DP=11075;DPB=11075;DPRA=1.04101;EPP=2074.59;EPPR=21978.3;GTI=1;LEN=1;MEANALT=1;MQM=59.9224;MQMR=59.9799;NS=94;NUMALT=1;ODDS=2.22495;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34180;QR=362344;RO=10120;RPL=0;RPP=2074.59;RPPR=21978.3;RPR=954;RUN=1;SAF=954;SAP=2074.59;SAR=0;SRF=10120;SRP=21978.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:176:176,0:176:6328:0:0:0,-52.9813,-569.607	0/0:166:166,0:166:5944:0:0:0,-49.971,-535.068	0/1:265:177,88:177:6324:88:3160:-204.851,0,-489.481	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.646	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:171:170,0:170:6049:0:0:0,-51.1751,-544.156	0/0:186:186,0:186:6676:0:0:0,-55.9916,-600.905	0/0:100:100,0:100:3572:0:0:0,-30.103,-321.688	0/0:115:115,0:115:4092:0:0:0,-34.6184,-368.468	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:46:29,17:29:1044:17:608:-41.2046,0,-80.4274	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:31:17,14:17:608:14:496:-35.6423,0,-45.7201	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:288:171,117:171:6112:117:4192:-290.72,0,-463.485	0/1:130:74,56:74:2652:56:2000:-141.138,0,-199.663	0/0:197:197,0:197:7076:0:0:0,-59.3029,-636.897	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.811	0/1:85:53,32:53:1896:32:1136:-76.9613,0,-145.331	0/0:128:128,0:128:4580:0:0:0,-38.5318,-412.365	0/0:506:506,0:506:18108:0:0:0,-152.321,-1629.27	0/0:284:284,0:284:10157:0:0:0,-85.4925,-914.06	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:419:419,0:419:14980:0:0:0,-126.132,-1347.93	0/0:279:279,0:279:10000:0:0:0,-83.9874,-899.935	0/1:118:67,51:67:2392:51:1832:-129.635,0,-180.016	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:123:123,0:123:4396:0:0:0,-37.0267,-395.814	0/1:260:179,81:179:6393:81:2900:-182.96,0,-497.191	0/1:41:13,28:13:464:28:1004:-78.3265,0,-29.7553	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:229:229,0:229:8188:0:0:0,-68.9359,-736.93	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:160:160,0:160:5748:0:0:0,-48.1648,-517.433	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:37:26,11:26:924:11:396:-24.8446,0,-72.3395	0/0:142:142,0:142:5092:0:0:0,-42.7463,-458.423	0/1:132:104,28:104:3740:28:1000:-50.5794,0,-297.063	0/0:239:238,1:238:8504:1:36:0,-68.3479,-760.574	0/0:164:164,0:164:5860:0:0:0,-49.3689,-527.513	0/0:196:196,0:196:7020:0:0:0,-59.0019,-631.862	0/0:197:197,0:197:7056:0:0:0,-59.3029,-635.098	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:191:191,0:191:6860:0:0:0,-57.4967,-617.449	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:208:208,0:208:7436:0:0:0,-62.6142,-669.287	0/1:30:22,8:22:792:8:284:-16.8725,0,-62.5748	0/0:15:14,1:14:500:1:36:0,-0.917175,-41.5459	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:146:146,0:146:5216:0:0:0,-43.9504,-469.58	0/1:96:55,41:55:1980:41:1476:-104.237,0,-149.576	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:310:309,1:309:11072:1:36:0,-89.721,-992.772	0/0:308:307,1:307:11004:1:36:0,-89.119,-986.655	0/0:121:110,11:110:3952:11:392:0,-0.818413,-320.262	0/0:104:104,0:104:3712:0:0:0,-31.3071,-334.283	0/1:136:94,42:94:3360:42:1512:-95.4345,0,-261.677	0/0:207:207,0:207:7396:0:0:0,-62.3132,-665.686	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/1:74:41,33:41:1468:33:1180:-84.2309,0,-110.14	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:178:178,0:178:6376:0:0:0,-53.5833,-573.929	0/1:66:29,37:29:1044:37:1328:-99.9543,0,-74.4068	0/0:223:223,0:223:8000:0:0:0,-67.1297,-720.019	0/0:226:226,0:226:8084:0:0:0,-68.0328,-727.579	0/0:227:227,0:227:8128:0:0:0,-68.3338,-731.536	0/0:118:116,2:116:4156:2:72:0,-28.6848,-367.386	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:173:173,0:173:6184:0:0:0,-52.0782,-556.659	0/1:173:112,61:112:4016:61:2192:-145.467,0,-309.55	0/1:288:183,105:183:6528:105:3756:-251.536,0,-500.91	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:35:26,9:26:932:9:324:-18.9698,0,-73.6605	0/1:66:35,31:35:1260:31:1108:-80.163,0,-93.8375	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:63:41,22:41:1476:22:792:-52.6408,0,-114.171	0/1:29:15,14:15:536:14:500:-36.6063,0,-39.8449	0/0:105:105,0:105:3756:0:0:0,-31.6081,-338.24	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876
chr02	1783749	.	A	C	156555	PASS	AB=0.570482;ABP=94.2286;AC=158;AF=0.849462;AN=186;AO=7154;CIGAR=1X;DP=8072;DPB=8072;DPRA=59.1136;EPP=15468.3;EPPR=1974.75;GTI=2;LEN=1;MEANALT=1.02198;MQM=59.973;MQMR=60;NS=93;NUMALT=1;ODDS=0.408271;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=252753;QR=32904;RO=916;RPL=8;RPP=15468.3;RPPR=1974.75;RPR=7146;RUN=1;SAF=7154;SAP=15537.7;SAR=0;SRF=916;SRP=1992.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:771:-69.7103,-6.62266,0	1/1:183:0,183:0:0:183:6430:-578.796,-55.0885,0	1/1:106:0,106:0:0:106:3766:-339.14,-31.9092,0	0/1:194:94,100:94:3376:100:3559:-262.119,0,-245.655	1/1:52:0,51:0:0:51:1812:-163.002,-15.3525,0	1/1:52:0,52:0:0:52:1856:-167.264,-15.6536,0	1/1:101:0,101:0:0:101:3569:-321.42,-30.404,0	1/1:165:0,165:0:0:165:5826:-524.459,-49.67,0	1/1:83:0,83:0:0:83:2930:-263.936,-24.9855,0	1/1:63:0,63:0:0:63:2214:-199.524,-18.9649,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:29:0,29:0:0:29:1019:-92.0213,-8.72987,0	1/1:49:0,49:0:0:49:1736:-156.524,-14.7505,0	0/1:49:22,27:22:788:27:960:-71.9658,0,-56.4943	1/1:37:0,37:0:0:37:1299:-117.21,-11.1381,0	0/1:22:13,9:13:460:9:307:-21.3376,0,-35.1127	1/1:45:0,45:0:0:45:1582:-142.669,-13.5464,0	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	1/1:15:0,15:0:0:15:510:-46.2221,-4.51545,0	0/1:151:40,111:40:1436:111:3922:-307.719,0,-84.0821	0/1:107:56,51:56:2012:51:1789:-128.994,0,-149.143	1/1:177:0,177:0:0:177:6265:-563.952,-53.2823,0	1/1:89:0,89:0:0:89:3143:-283.098,-26.7917,0	0/1:118:63,55:63:2268:55:1934:-138.813,0,-168.86	1/1:84:0,84:0:0:84:2961:-266.724,-25.2865,0	1/1:313:1,312:1:36:312:11009:-987.126,-90.6241,0	1/1:206:0,206:0:0:206:7234:-651.117,-62.0122,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:336:0,336:0:0:336:11843:-1065.75,-101.146,0	1/1:263:0,263:0:0:263:9290:-836.08,-79.1709,0	0/1:101:47,54:47:1692:54:1928:-143.393,0,-122.163	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:132:-12.1896,-1.20412,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:110:0,110:0:0:110:3911:-352.183,-33.1133,0	0/1:182:75,107:75:2692:107:3735:-281.408,0,-187.737	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:144:0,144:0:0:144:5116:-460.585,-43.3483,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:118:0,118:0:0:118:4166:-375.126,-35.5215,0	1/1:38:0,38:0:0:38:1329:-119.907,-11.4391,0	0/1:50:27,23:27:972:23:824:-59.4318,0,-72.7464	1/1:95:0,95:0:0:95:3387:-305.046,-28.5979,0	0/1:119:43,76:43:1548:76:2687:-206.254,0,-103.79	1/1:244:0,244:0:0:244:8650:-778.415,-73.4513,0	1/1:112:1,111:1:36:111:3924:-349.757,-30.1171,0	1/1:148:0,148:0:0:148:5272:-474.619,-44.5524,0	1/1:154:0,154:0:0:154:5445:-490.18,-46.3586,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:105:0,105:0:0:105:3695:-332.756,-31.6082,0	1/1:37:0,37:0:0:37:1315:-118.651,-11.1381,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:107:36,71:36:1296:71:2496:-192.682,0,-84.7337	0/1:29:12,17:12:432:17:595:-45.1468,0,-30.4913	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:11:0,11:0:0:11:383:-34.8032,-3.31133,0	1/1:62:0,62:0:0:62:2182:-196.646,-18.6639,0	0/1:68:28,40:28:1004:40:1415:-107.177,0,-70.2058	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:247:0,247:0:0:247:8780:-790.194,-74.3544,0	1/1:171:0,171:0:0:171:6050:-544.61,-51.4761,0	1/1:60:0,60:0:0:60:2130:-191.968,-18.0618,0	1/1:87:1,86:1:36:86:3080:-273.83,-22.5913,0	0/1:151:65,86:65:2332:86:3045:-228.772,0,-164.684	1/1:139:1,137:1:36:137:4848:-432.879,-38.3037,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:60:0,60:0:0:60:2122:-191.248,-18.0618,0	0/1:72:32,40:32:1152:40:1395:-104.17,0,-82.316	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	1/1:109:0,109:0:0:109:3850:-346.699,-32.8123,0	0/1:35:20,15:20:716:15:518:-36.4095,0,-54.2317	1/1:116:0,116:0:0:116:4075:-366.939,-34.9195,0	1/1:161:0,161:0:0:161:5676:-510.967,-48.4658,0	1/1:176:0,176:0:0:176:6150:-553.598,-52.9813,0	1/1:111:0,111:0:0:111:3899:-351.108,-33.4143,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:100:1,99:1:36:99:3496:-311.255,-26.5047,0	0/1:120:37,83:37:1332:83:2926:-227.452,0,-84.0588	0/1:177:67,110:67:2404:110:3876:-295.756,0,-163.334	1/1:76:0,76:0:0:76:2683:-241.717,-22.8783,0	1/1:37:0,37:0:0:37:1294:-116.76,-11.1381,0	0/1:48:23,25:23:824:25:880:-65.0683,0,-60.0339	0/1:103:48,55:48:1720:55:1951:-144.859,0,-124.079	0/1:23:13,10:13:468:10:352:-25.0945,0,-35.536	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:36:0,36:0:0:36:1266:-114.241,-10.8371,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:33:13,20:13:468:20:703:-53.6595,0,-32.5257	0/1:35:23,12:23:828:12:426:-28.1417,0,-64.3081	1/1:112:0,112:0:0:112:3971:-357.583,-33.7154,0	1/1:60:0,60:0:0:60:2114:-190.528,-18.0618,0
chr02	1798779	.	A	T	185862	PASS	AB=0.479383;ABP=15.4562;AC=161;AF=0.856383;AN=188;AO=8220;CIGAR=1X;DP=9994;DPB=9994;DPRA=0;EPP=16514.9;EPPR=3651.09;GTI=5;LEN=1;MEANALT=1.08511;MQM=59.9802;MQMR=60;NS=94;NUMALT=1;ODDS=0.516276;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293507;QR=63207;RO=1763;RPL=157;RPP=16514.9;RPPR=3651.09;RPR=8063;RUN=1;SAF=0;SAP=17852.5;SAR=8220;SRF=0;SRP=3831.32;SRR=1763;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:158:0,158:0:0:158:5656:-509.16,-47.5627,0	1/1:91:0,91:0:0:91:3235:-291.373,-27.3937,0	0/1:185:110,74:110:3956:74:2652:-183.174,0,-300.48	1/1:90:0,89:0:0:89:3184:-286.424,-26.7917,0	1/1:63:0,63:0:0:63:2228:-200.781,-18.9649,0	1/1:159:0,159:0:0:159:5635:-507.272,-47.8638,0	1/1:164:1,163:1:36:163:5775:-516.267,-45.7706,0	1/1:111:0,111:0:0:111:3969:-357.399,-33.4143,0	1/1:172:0,172:0:0:172:6145:-553.151,-51.7772,0	1/1:30:0,30:0:0:30:1071:-96.7016,-9.0309,0	1/1:82:0,82:0:0:82:2931:-264.024,-24.6845,0	1/1:103:0,103:0:0:103:3700:-333.201,-31.0061,0	0/1:60:30,30:30:1062:30:1040:-75.8446,0,-77.8282	1/1:81:1,80:1:36:80:2874:-255.298,-20.7852,0	0/1:64:30,34:30:1080:34:1220:-90.8409,0,-78.2473	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0	1/1:73:0,73:0:0:73:2588:-233.168,-21.9752,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:283:148,135:148:5312:135:4832:-349.843,0,-393.021	0/1:182:75,107:75:2692:107:3824:-289.57,0,-187.737	1/1:169:0,169:0:0:169:6033:-543.074,-50.8741,0	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	0/1:181:98,83:98:3520:83:2947:-210.975,0,-262.522	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:400:1,397:1:36:397:14203:-1273.41,-116.571,0	1/1:238:0,238:0:0:238:8502:-765.183,-71.6451,0	1/1:42:0,42:0:0:42:1503:-135.564,-12.6433,0	1/1:179:0,179:0:0:179:6404:-576.449,-53.8844,0	1/1:240:0,240:0:0:240:8539:-768.512,-72.2472,0	0/1:115:53,62:53:1904:62:2204:-164.007,0,-137.019	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2535,-2.40824,0	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	1/1:263:0,263:0:0:263:9422:-847.941,-79.1709,0	0/1:191:103,88:103:3681:88:3152:-226.408,0,-273.995	0/1:78:40,38:40:1440:38:1347:-98.0491,0,-106.417	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:163:0,163:0:0:163:5843:-525.97,-49.0679,0	1/1:39:0,38:0:0:38:1351:-121.53,-11.4391,0	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	1/1:97:0,95:0:0:95:3408:-306.574,-28.5979,0	0/1:105:59,46:59:2098:46:1648:-117,0,-157.48	1/1:121:0,121:0:0:121:4332:-390.055,-36.4246,0	0/1:162:83,79:83:2971:79:2793:-202.842,0,-218.855	1/1:158:0,158:0:0:158:5632:-507.001,-47.5627,0	1/1:149:0,149:0:0:149:5332:-480.014,-44.8535,0	1/1:95:1,94:1:36:94:3360:-299.019,-24.9996,0	1/1:169:0,168:0:0:168:6016:-541.224,-50.573,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:97:1,96:1:36:96:3417:-304.146,-25.6016,0	1/1:51:0,50:0:0:50:1792:-161.242,-15.0515,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:123:78,45:78:2804:45:1620:-109.063,0,-215.572	0/1:48:25,23:25:896:23:824:-60.0339,0,-66.5109	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:70:0,70:0:0:70:2476:-223.088,-21.0721,0	0/1:136:66,70:66:2372:70:2508:-185.032,0,-172.798	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:229:0,229:0:0:229:8135:-732.169,-68.9359,0	1/1:182:3,179:3:108:179:6353:-561.79,-44.7123,0	0/1:42:4,38:4:144:38:1316:-106.093,0,-0.670357	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	0/1:188:97,91:97:3467:91:3264:-237.386,0,-255.648	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:13:0,13:0:0:13:459:-41.6441,-3.91339,0	1/1:73:0,73:0:0:73:2604:-234.609,-21.9752,0	0/1:129:64,65:64:2289:65:2321:-170.286,0,-167.437	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:100:0,100:0:0:100:3562:-320.788,-30.103,0	0/1:92:49,43:49:1764:43:1532:-110.478,0,-131.349	1/1:120:0,120:0:0:120:4300:-387.168,-36.1236,0	1/1:157:0,155:0:0:155:5548:-499.085,-46.6597,0	1/1:112:0,112:0:0:112:4011:-361.179,-33.7154,0	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	1/1:103:0,103:0:0:103:3700:-333.156,-31.0061,0	0/1:152:77,75:77:2751:75:2692:-196.768,0,-202.075	0/1:279:136,143:136:4879:143:5098:-374.976,0,-355.273	1/1:122:0,122:0:0:122:4339:-390.685,-36.7257,0	1/1:66:1,65:1:36:65:2336:-206.901,-16.2697,0	0/1:125:62,63:62:2232:63:2256:-165.674,0,-163.515	0/1:179:96,83:96:3448:83:2952:-212.029,0,-256.647	0/1:65:37,28:37:1332:28:1000:-70.7484,0,-100.615	1/1:108:0,108:0:0:108:3852:-346.874,-32.5112,0	1/1:80:0,80:0:0:80:2857:-257.367,-24.0824,0	1/1:37:0,37:0:0:37:1314:-118.56,-11.1381,0	0/1:77:43,34:43:1525:34:1207:-85.756,0,-114.362	0/1:102:74,28:74:2652:28:1000:-59.6103,0,-208.221	1/1:85:0,85:0:0:85:3035:-273.379,-25.5876,0	1/1:119:0,119:0:0:119:4261:-383.667,-35.8226,0
chr02	1845696	.	C	T	169123	PASS	AB=0.497544;ABP=3.15964;AC=162;AF=0.861702;AN=188;AO=7702;CIGAR=1X;DP=9143;DPB=9143;DPRA=0;EPP=16727.7;EPPR=3129.93;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9907;MQMR=60;NS=94;NUMALT=1;ODDS=0.714668;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275372;QR=51361;RO=1440;RPL=7702;RPP=16727.7;RPPR=3121.25;RPR=0;RUN=1;SAF=7702;SAP=16727.7;SAR=0;SRF=1439;SRP=3121.25;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:100:0,100:0:0:100:3564:-320.969,-30.103,0	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	0/1:178:91,87:91:3234:87:3099:-225.555,0,-237.696	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:110:0,110:0:0:110:3886:-349.935,-33.1133,0	1/1:159:1,158:1:36:158:5664:-506.28,-44.2655,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:114:0,114:0:0:114:4084:-367.745,-34.3174,0	1/1:124:0,124:0:0:124:4426:-398.512,-37.3277,0	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	0/1:199:102,97:102:3638:97:3475:-253.056,0,-267.72	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	0/1:78:28,50:28:993:50:1800:-138.802,0,-66.2022	1/1:133:0,133:0:0:133:4768:-429.277,-40.037,0	1/1:100:0,100:0:0:100:3576:-322.048,-30.103,0	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	0/1:131:78,53:78:2781:53:1895:-131.392,0,-211.095	0/1:81:47,34:47:1670:34:1215:-85.2723,0,-126.202	1/1:61:1,60:1:36:60:2142:-189.078,-14.7646,0	1/1:32:0,32:0:0:32:1127:-101.737,-9.63296,0	0/1:75:35,40:35:1238:40:1424:-105.88,0,-89.1456	1/1:73:0,72:0:0:72:2584:-232.449,-21.6742,0	1/1:250:0,250:0:0:250:8918:-802.603,-75.2575,0	1/1:147:1,146:1:36:146:5218:-466.137,-40.6531,0	1/1:41:0,41:0:0:41:1463:-131.965,-12.3422,0	1/1:198:0,198:0:0:198:7055:-635.012,-59.6039,0	1/1:207:0,207:0:0:207:7395:-665.598,-62.3132,0	0/1:73:31,42:31:1116:42:1499:-113.229,0,-78.7765	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:201:0,201:0:0:201:7198:-647.873,-60.507,0	0/1:214:88,126:88:3151:126:4514:-342.006,0,-219.394	0/1:131:65,66:65:2332:66:2368:-173.943,0,-170.705	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:107:0,107:0:0:107:3801:-342.289,-32.2102,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:123:0,123:0:0:123:4391:-395.364,-37.0267,0	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/1:68:27,41:27:968:41:1467:-111.855,0,-66.9673	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:94:49,45:49:1760:45:1604:-116.353,0,-130.387	1/1:167:0,167:0:0:167:5962:-536.688,-50.272,0	1/1:103:0,103:0:0:103:3663:-329.873,-31.0061,0	1/1:175:0,175:0:0:175:6271:-564.482,-52.6803,0	1/1:147:0,147:0:0:147:5276:-474.974,-44.2514,0	1/1:17:1,16:1:36:16:572:-48.2152,-1.51924,0	1/1:147:0,147:0:0:147:5260:-473.537,-44.2514,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:129:69,60:69:2464:60:2144:-154.395,0,-183.182	0/1:24:9,15:9:305:15:527:-40.5355,0,-20.5525	0/1:13:6,7:6:212:7:248:-18.7508,0,-15.5114	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:76:0,76:0:0:76:2723:-245.312,-22.8783,0	0/1:191:97,94:97:3441:94:3356:-244.76,0,-252.404	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:166:0,166:0:0:166:5931:-533.899,-49.971,0	1/1:205:1,204:1:36:204:7293:-652.822,-58.1129,0	1/1:138:2,136:2:72:136:4855:-430.266,-34.7054,0	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	0/1:130:64,66:64:2292:66:2320:-169.923,0,-167.407	1/1:96:1,95:1:36:95:3386:-301.357,-25.3006,0	1/1:87:0,87:0:0:87:3102:-279.407,-26.1896,0	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	0/1:134:79,55:79:2816:55:1971:-137.326,0,-213.342	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0	0/1:58:31,27:31:1112:27:968:-69.9776,0,-82.9316	1/1:188:0,188:0:0:188:6713:-604.246,-56.5936,0	1/1:144:0,144:0:0:144:5127:-461.573,-43.3483,0	1/1:134:0,134:0:0:134:4792:-431.279,-40.338,0	1/1:109:0,109:0:0:109:3900:-351.194,-32.8123,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:105:0,105:0:0:105:3759:-338.509,-31.6082,0	0/1:112:56,56:56:2012:56:2012:-147.638,0,-147.638	0/1:121:60,61:60:2129:61:2192:-161.121,0,-155.452	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	1/1:115:0,115:0:0:115:4127:-371.612,-34.6185,0	0/1:107:58,49:58:2076:49:1747:-125.303,0,-154.9	0/1:150:70,80:70:2487:80:2872:-213.562,0,-178.929	0/1:38:16,22:16:572:22:792:-60.1665,0,-40.3743	1/1:90:0,90:0:0:90:3236:-291.461,-27.0927,0	1/1:107:0,107:0:0:107:3832:-345.077,-32.2102,0	1/1:142:0,142:0:0:142:5072:-456.623,-42.7463,0	0/1:234:119,115:119:4239:115:4120:-300.543,0,-311.247	0/1:82:53,29:53:1891:29:1035:-68.7786,0,-145.783	1/1:21:0,21:0:0:21:737:-66.6503,-6.32163,0	1/1:105:0,105:0:0:105:3755:-338.15,-31.6082,0
chr02	1901717	.	AATA	GATT,GATA	207067	PASS	AB=0.50292,0.493796;ABP=3.21318,3.92644;AC=163,25;AF=0.867021,0.132979;AN=188;AO=8130,1368;CIGAR=1X2M1X,1X3M;DP=9534;DPB=9534;DPRA=0,1.26213;EPP=17657.1,2973.58;EPPR=7.35324;GTI=0;LEN=4,1;MEANALT=1.71277,2.27778;MQM=59.9641,59.9766;MQMR=60;NS=94;NUMALT=2;ODDS=0.55331;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=286564,48799;QR=64;RO=2;RPL=8130,1368;RPP=17657.1,2973.58;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=8130,1368;SAP=17657.1,2973.58;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:69:0,68,0:0:0:68,0:2366,0:-212.859,-20.47,0,-212.859,-20.47,-212.859	1/1:131:0,131,0:0:0:131,0:4645,0:-418.216,-39.4349,0,-418.216,-39.4349,-418.216	1/1:133:0,132,0:0:0:132,0:4627,0:-416.386,-39.736,0,-416.386,-39.736,-416.386	1/2:208:0,103,105:0:0:103,105:3635,3752:-602.262,-306.268,-275.262,-296.349,0,-264.741	1/1:111:0,110,1:0:0:110,1:3910,36:-351.734,-33.1133,0,-348.796,-29.8161,-348.495	1/1:87:0,87,0:0:0:87,0:3070,0:-276.53,-26.1896,0,-276.53,-26.1896,-276.53	1/1:120:0,119,0:0:0:119,0:4180,0:-376.164,-35.8226,0,-376.164,-35.8226,-376.164	1/1:214:0,213,1:0:0:213,1:7389,36:-664.716,-64.1194,0,-661.779,-60.8221,-661.478	1/1:127:0,127,0:0:0:127,0:4429,0:-398.745,-38.2308,0,-398.745,-38.2308,-398.745	1/1:97:0,95,1:0:0:95,1:3354,21:-301.794,-28.5979,0,-300.206,-27.0839,-299.905	1/1:38:0,38,0:0:0:38,0:1343,0:-121.17,-11.4391,0,-121.17,-11.4391,-121.17	1/1:49:0,49,0:0:0:49,0:1748,0:-157.604,-14.7505,0,-157.604,-14.7505,-157.604	1/1:68:0,68,0:0:0:68,0:2399,0:-216.169,-20.47,0,-216.169,-20.47,-216.169	1/2:62:1,41,20:1:28:41,20:1430,716:-172.244,-56.2484,-46.1212,-114.152,0,-110.349	1/1:54:0,53,0:0:0:53,0:1870,0:-168.327,-15.9546,0,-168.327,-15.9546,-168.327	1/2:30:0,17,13:0:0:17,13:607,468:-88.0319,-38.5463,-33.4287,-49.8442,0,-45.9309	1/1:72:0,72,0:0:0:72,0:2528,0:-227.771,-21.6742,0,-227.771,-21.6742,-227.771	1/1:54:0,54,0:0:0:54,0:1922,0:-173.257,-16.2556,0,-173.257,-16.2556,-173.257	1/1:33:0,33,0:0:0:33,0:1168,0:-105.427,-9.93399,0,-105.427,-9.93399,-105.427	1/2:212:0,85,127:0:0:85,127:3008,4560:-617.344,-372.334,-346.746,-245.366,0,-207.136	1/2:159:0,71,87:0:0:71,87:2474,3105:-454.422,-253.235,-231.862,-201.287,0,-175.098	1/1:133:0,131,0:0:0:131,0:4638,0:-417.292,-39.4349,0,-417.292,-39.4349,-417.292	1/1:55:0,55,0:0:0:55,0:1944,0:-175.235,-16.5567,0,-175.235,-16.5567,-175.235	1/2:122:0,62,60:0:0:62,60:2193,2129:-352.432,-173.815,-155.151,-178.971,0,-160.909	1/1:87:0,87,0:0:0:87,0:3104,0:-279.588,-26.1896,0,-279.588,-26.1896,-279.588	1/1:328:0,326,0:0:0:326,0:11489,0:-1033.57,-98.1358,0,-1033.57,-98.1358,-1033.57	1/1:177:0,177,0:0:0:177,0:6267,0:-564.129,-53.2823,0,-564.129,-53.2823,-564.129	1/1:34:0,34,0:0:0:34,0:1208,0:-109.026,-10.235,0,-109.026,-10.235,-109.026	1/1:239:0,238,0:0:0:238,0:8407,0:-756.365,-71.6451,0,-756.365,-71.6451,-756.365	1/1:291:0,290,1:0:0:290,1:10244,36:-921.537,-87.2987,0,-918.6,-84.0015,-918.299	1/2:107:0,50,57:0:0:50,57:1740,2052:-309.27,-167.793,-152.741,-141.83,0,-124.672	1/1:6:0,6,0:0:0:6,0:208,0:-19.0589,-1.80618,0,-19.0589,-1.80618,-19.0589	1/1:9:0,9,0:0:0:9,0:319,0:-29.0517,-2.70927,0,-29.0517,-2.70927,-29.0517	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:13:0,12,0:0:0:12,0:424,0:-38.137,-3.61236,0,-38.137,-3.61236,-38.137	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:193:0,192,0:0:0:192,0:6788,0:-610.701,-57.7978,0,-610.701,-57.7978,-610.701	1/2:305:0,142,160:0:0:142,160:5009,5701:-872.592,-464.731,-421.985,-407.904,0,-359.739	1/2:34:0,19,15:0:0:19,15:672,536:-98.7912,-44.0594,-38.3398,-55.0874,0,-50.5719	1/1:4:0,4,0:0:0:4,0:136,0:-12.5754,-1.20412,0,-12.5754,-1.20412,-12.5754	1/1:109:0,109,0:0:0:109,0:3833,0:-345.171,-32.8123,0,-345.171,-32.8123,-345.171	1/1:28:0,27,0:0:0:27,0:947,0:-85.1844,-8.12781,0,-85.1844,-8.12781,-85.1844	1/1:231:0,229,0:0:0:229,0:8063,0:-725.403,-68.9359,0,-725.403,-68.9359,-725.403	1/1:57:0,57,0:0:0:57,0:2031,0:-183.063,-17.1587,0,-183.063,-17.1587,-183.063	1/2:57:0,28,29:0:0:28,29:962,1040:-163.292,-85.1845,-76.7557,-78.4586,0,-69.7287	1/1:59:0,59,0:0:0:59,0:2090,0:-188.369,-17.7608,0,-188.369,-17.7608,-188.369	1/2:220:0,108,111:0:0:108,111:3800,3981:-634.109,-324.773,-292.261,-309.4,0,-275.986	1/1:225:0,225,0:0:0:225,0:7883,0:-709.512,-67.7318,0,-709.512,-67.7318,-709.512	1/1:97:0,96,0:0:0:96,0:3388,0:-304.778,-28.8989,0,-304.778,-28.8989,-304.778	1/1:153:0,153,0:0:0:153,0:5405,0:-486.586,-46.0576,0,-486.586,-46.0576,-486.586	1/1:156:0,156,0:0:0:156,0:5472,0:-492.618,-46.9607,0,-492.618,-46.9607,-492.618	1/1:10:0,10,0:0:0:10,0:354,0:-32.1999,-3.0103,0,-32.1999,-3.0103,-32.1999	1/1:180:0,179,1:0:0:179,1:6390,36:-574.833,-53.8844,0,-571.896,-50.5871,-571.595	1/1:56:0,55,1:0:0:55,1:1928,36:-173.436,-16.5567,0,-170.499,-13.2594,-170.198	1/1:25:0,25,0:0:0:25,0:874,0:-78.9751,-7.52575,0,-78.9751,-7.52575,-78.9751	1/2:149:0,69,80:0:0:69,80:2408,2872:-430.483,-234.634,-213.863,-196.202,0,-172.12	1/2:67:0,46,21:0:0:46,21:1619,732:-191.678,-59.877,-46.0297,-132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chr02	1901747	.	ATTTGTC	ACTTGTC,ATGTC	171370	PASS	AB=0.521399,0.471816;ABP=10.6309,16.2295;AC=158,26;AF=0.858696,0.141304;AN=184;AO=6800,915;CIGAR=1M1X5M,1M2D4M;DP=7770;DPB=7506.71;DPRA=0,0.948401;EPP=14760.3,1989.91;EPPR=0;GTI=0;LEN=1,2;MEANALT=1.83696,2.40625;MQM=58.0931,48.5464;MQMR=0;NS=92;NUMALT=2;ODDS=5.26001;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=243196,32057;QR=0;RO=0;RPL=0,0;RPP=14769,1989.91;RPPR=0;RPR=6800,915;RUN=1,1;SAF=1,0;SAP=14760.3,1989.91;SAR=6799,915;SRF=0;SRP=0;SRR=0;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,78,0:0:0:78,0:2808,0:-252.507,-23.4803,0,-252.507,-23.4803,-252.507	1/1:41:0,41,0:0:0:41,0:1468,0:-132.323,-12.3422,0,-132.323,-12.3422,-132.323	1/1:265:0,263,0:0:0:263,0:9412,0:-845.421,-79.1709,0,-845.421,-79.1709,-845.421	1/2:199:0,102,94:0:0:102,94:3664,3320:-568.192,-269.29,-238.585,-298.955,0,-270.659	1/1:70:0,69,0:0:0:69,0:2465,0:-221.661,-20.7711,0,-221.661,-20.7711,-221.661	1/1:60:0,59,0:0:0:59,0:2105,0:-188.988,-17.7608,0,-188.988,-17.7608,-188.988	1/1:88:0,88,0:0:0:88,0:3161,0:-284.444,-26.4906,0,-284.444,-26.4906,-284.444	1/1:125:0,124,0:0:0:124,0:4456,0:-400.046,-37.3277,0,-400.046,-37.3277,-400.046	1/1:112:0,112,0:0:0:112,0:3998,0:-359.602,-33.7154,0,-359.602,-33.7154,-359.602	1/1:75:0,75,0:0:0:75,0:2696,0:-242.788,-22.5773,0,-242.788,-22.5773,-242.788	1/1:31:0,31,0:0:0:31,0:1108,0:-100.01,-9.33193,0,-100.01,-9.33193,-100.01	1/1:99:0,99,0:0:0:99,0:3548,0:-319.068,-29.802,0,-319.068,-29.802,-319.068	1/1:67:0,67,0:0:0:67,0:2399,0:-215.864,-20.169,0,-215.864,-20.169,-215.864	1/2:60:0,37,23:0:0:37,23:1316,788:-170.641,-63.4121,-52.274,-107.573,0,-100.649	1/1:51:0,49,1:0:0:49,1:1760,36:-158.335,-14.7505,0,-155.4,-11.7604,-155.099	1/2:50:0,30,20:0:0:30,20:1076,695:-144.219,-56.4742,-47.4433,-88.0954,0,-82.0748	1/1:47:0,46,0:0:0:46,0:1648,0:-147.835,-13.8474,0,-147.835,-13.8474,-147.835	1/1:23:0,23,0:0:0:23,0:820,0:-73.9896,-6.92369,0,-73.9896,-6.92369,-73.9896	1/1:25:0,25,0:0:0:25,0:896,0:-80.8636,-7.52575,0,-80.8636,-7.52575,-80.8636	1/2:80:0,41,39:0:0:41,39:1457,1358:-229.049,-110.332,-97.99,-119.068,0,-107.328	1/2:100:0,67,33:0:0:67,33:2374,1176:-288.756,-95.5069,-75.3379,-193.603,0,-183.669	1/1:142:0,139,0:0:0:139,0:4966,0:-446.664,-41.8432,0,-446.664,-41.8432,-446.664	1/1:135:0,135,0:0:0:135,0:4829,0:-434.598,-40.6391,0,-434.598,-40.6391,-434.598	1/2:58:0,32,25:0:0:32,25:1133,876:-162.677,-70.4066,-60.7736,-92.4123,0,-84.8865	1/1:100:0,100,0:0:0:100,0:3569,0:-321.058,-30.103,0,-321.058,-30.103,-321.058	1/1:271:0,270,0:0:0:270,0:9657,0:-868.78,-81.2781,0,-868.78,-81.2781,-868.78	1/1:285:0,283,0:0:0:283,0:10139,0:-911.054,-85.1915,0,-911.054,-85.1915,-911.054	1/1:23:0,23,0:0:0:23,0:820,0:-74.0811,-6.92369,0,-74.0811,-6.92369,-74.0811	1/1:251:0,249,0:0:0:249,0:8890,0:-799.731,-74.9565,0,-799.731,-74.9565,-799.731	1/1:124:0,124,0:0:0:124,0:4449,0:-400.356,-37.3277,0,-400.356,-37.3277,-400.356	1/2:81:0,37,44:0:0:37,44:1328,1525:-232.05,-123.723,-112.585,-108.68,0,-95.4346	1/1:5:0,5,0:0:0:5,0:180,0:-16.5474,-1.50515,0,-16.5474,-1.50515,-16.5474	1/1:4:0,4,0:0:0:4,0:144,0:-13.3025,-1.20412,0,-13.3025,-1.20412,-13.3025	.:.:.:.:.:.:.:.	1/1:6:0,6,0:0:0:6,0:216,0:-19.733,-1.80618,0,-19.733,-1.80618,-19.733	1/2:20:0,10,10:0:0:10,10:360,356:-58.3859,-29.0314,-26.0211,-29.7104,0,-26.7001	1/1:171:0,168,0:0:0:168,0:5965,0:-536.615,-50.573,0,-536.615,-50.573,-536.615	1/2:129:0,60,69:0:0:60,69:2130,2460:-372.555,-199.171,-181.109,-173.739,0,-152.968	1/2:37:0,19,18:0:0:19,18:684,619:-105.612,-49.8352,-44.1156,-56.1261,0,-50.7076	1/1:3:0,3,0:0:0:3,0:108,0:-10.0709,-0.90309,0,-10.0709,-0.90309,-10.0709	1/1:101:0,101,0:0:0:101,0:3636,0:-327.351,-30.404,0,-327.351,-30.404,-327.351	1/1:23:0,22,0:0:0:22,0:788,0:-70.8701,-6.62266,0,-70.8701,-6.62266,-70.8701	1/1:154:0,154,0:0:0:154,0:5495,0:-494.266,-46.3586,0,-494.266,-46.3586,-494.266	1/1:36:0,36,0:0:0:36,0:1287,0:-116.114,-10.8371,0,-116.114,-10.8371,-116.114	1/2:23:0,11,12:0:0:11,12:392,423:-66.5927,-34.6377,-31.3263,-32.3087,0,-28.6964	1/1:112:0,110,0:0:0:110,0:3929,0:-353.381,-33.1133,0,-353.381,-33.1133,-353.381	1/2:133:0,58,71:0:0:58,71:2072,2529:-371.677,-202.994,-185.534,-168.755,0,-147.382	1/1:202:0,199,2:0:0:199,2:7108,68:-639.252,-59.905,0,-633.736,-54.3291,-633.134	1/1:81:0,80,0:0:0:80,0:2867,0:-258,-24.0824,0,-258,-24.0824,-258	1/1:65:0,65,0:0:0:65,0:2336,0:-210.456,-19.567,0,-210.456,-19.567,-210.456	1/1:89:0,87,2:0:0:87,2:3109,72:-279.513,-26.1896,0,-273.654,-19.9721,-273.052	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:122:0,121,0:0:0:121,0:4340,0:-389.988,-36.4246,0,-389.988,-36.4246,-389.988	1/1:68:0,66,0:0:0:66,0:2363,0:-212.573,-19.868,0,-212.573,-19.868,-212.573	1/1:2:0,2,0:0:0:2,0:72,0:-6.83179,-0.60206,0,-6.83179,-0.60206,-6.83179	1/2:121:0,65,56:0:0:65,56:2312,1960:-346.774,-158.511,-138.944,-188.614,0,-171.756	1/2:51:0,25,26:0:0:25,26:888,924:-147.403,-75.3177,-67.792,-72.4393,0,-64.6125	1/2:4:0,1,3:0:0:1,3:36,104:-11.7204,-8.77944,-8.47841,-3.29724,0,-2.39415	1/1:4:0,4,0:0:0:4,0:144,0:-1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chr02	1911205	.	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chr02	1911231	.	A	G	481384	PASS	AB=0.479439;ABP=26.3163;AC=162;AF=0.861702;AN=188;AO=17475;CIGAR=1X;DP=20804;DPB=20804;DPRA=0;EPP=37949.5;EPPR=7216.64;GTI=2;LEN=1;MEANALT=1.07447;MQM=59.9937;MQMR=59.9994;NS=94;NUMALT=1;ODDS=2.82231;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=616260;QR=118461;RO=3322;RPL=9332;RPP=178.682;RPPR=5.68771;RPR=8143;RUN=1;SAF=9332;SAP=178.682;SAR=8143;SRF=1693;SRP=5.68771;SRR=1629;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:86:0,86:0:0:86:2967:-267.264,-25.8886,0	1/1:295:1,294:1:36:294:10422:-934.311,-85.2056,0	1/1:258:0,258:0:0:258:9039:-813.5,-77.6657,0	0/1:497:248,249:248:8857:249:8804:-642.746,0,-647.504	1/1:99:0,99:0:0:99:3468:-312.333,-29.802,0	1/1:139:0,139:0:0:139:4934:-444.214,-41.8432,0	1/1:439:1,438:1:36:438:15473:-1388.7,-128.554,0	1/1:343:1,341:1:36:341:12048:-1080.59,-99.7138,0	1/1:234:1,233:1:36:233:8214:-735.685,-66.8427,0	1/1:278:1,277:1:36:277:9813:-879.524,-80.0881,0	1/1:182:0,182:0:0:182:6387:-574.927,-54.7875,0	1/1:190:0,190:0:0:190:6634:-597.151,-57.1957,0	1/1:223:0,223:0:0:223:7857:-707.166,-67.1297,0	0/1:204:117,87:117:4171:87:3101:-217.908,0,-314.161	1/1:134:0,134:0:0:134:4718:-424.783,-40.338,0	0/1:114:58,56:58:2064:56:1958:-142.175,0,-151.714	1/1:193:0,192:0:0:192:6784:-610.41,-57.7978,0	1/1:125:0,125:0:0:125:4420:-397.973,-37.6288,0	1/1:131:0,131:0:0:131:4655:-419.113,-39.4349,0	0/1:369:195,173:195:6951:173:6086:-436.71,0,-514.517	0/1:354:190,164:190:6815:164:5823:-417.621,0,-506.854	1/1:126:0,126:0:0:126:4451:-400.764,-37.9298,0	1/1:163:0,163:0:0:163:5776:-519.953,-49.0679,0	0/1:261:156,105:156:5549:105:3666:-251.577,0,-420.965	1/1:180:1,179:1:36:179:6353:-568.265,-50.5871,0	1/1:645:0,645:0:0:645:22828:-2053.94,-194.164,0	1/1:489:0,488:0:0:488:17187:-1546.13,-146.903,0	1/1:86:0,86:0:0:86:3011:-271.223,-25.8886,0	1/1:686:0,686:0:0:686:24225:-2179.62,-206.507,0	1/1:229:0,229:0:0:229:8145:-733.071,-68.9359,0	0/1:290:151,139:151:5373:139:4932:-356.734,0,-396.405	1/1:32:0,32:0:0:32:1120:-101.105,-9.63296,0	1/1:38:0,38:0:0:38:1353:-122.068,-11.4391,0	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	1/1:22:0,22:0:0:22:754:-68.1733,-6.62266,0	0/1:25:12,13:12:424:13:436:-32.034,0,-30.9707	1/1:487:1,486:1:36:486:17139:-1538.57,-143.003,0	0/1:267:142,125:142:5079:125:4442:-319.578,0,-376.879	0/1:244:103,141:103:3668:141:4987:-375.528,0,-256.871	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:257:0,257:0:0:257:9044:-813.953,-77.3647,0	1/1:122:0,122:0:0:122:4320:-388.976,-36.7257,0	1/1:211:0,211:0:0:211:7438:-669.475,-63.5173,0	1/1:212:0,212:0:0:212:7460:-671.454,-63.8184,0	0/1:150:82,68:82:2944:68:2284:-160.667,0,-220.039	1/1:245:0,245:0:0:245:8664:-779.76,-73.7524,0	0/1:221:95,126:95:3388:126:4403:-329.92,0,-238.606	1/1:298:0,298:0:0:298:10442:-939.716,-89.7069,0	1/1:248:0,248:0:0:248:8720:-784.804,-74.6554,0	1/1:232:1,231:1:36:231:8172:-731.899,-66.2407,0	1/1:379:0,379:0:0:379:13365:-1202.66,-114.09,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:209:0,209:0:0:209:7366:-662.996,-62.9153,0	1/1:87:0,87:0:0:87:3084:-277.787,-26.1896,0	1/1:43:0,43:0:0:43:1499:-135.2,-12.9443,0	0/1:316:158,157:158:5611:157:5499:-400.019,0,-410.088	0/1:87:40,47:40:1427:47:1641:-121.786,0,-102.537	0/1:26:10,16:10:351:16:568:-43.6251,0,-24.0999	1/1:39:0,39:0:0:39:1379:-124.408,-11.7402,0	1/1:196:0,195:0:0:195:6899:-620.663,-58.7009,0	0/1:288:181,107:181:6460:107:3745:-250.556,0,-494.789	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:434:1,433:1:36:433:15162:-1360.73,-127.049,0	1/1:408:1,407:1:36:407:14335:-1286.32,-119.222,0	1/1:116:2,114:2:72:114:4057:-358.482,-28.0828,0	1/1:187:0,187:0:0:187:6488:-583.99,-56.2926,0	0/1:307:180,127:180:6379:127:4446:-307.9,0,-481.786	1/1:158:1,156:1:36:156:5518:-493.223,-43.9533,0	1/1:96:0,96:0:0:96:3410:-307.116,-28.8989,0	1/1:224:0,224:0:0:224:7932:-713.908,-67.4307,0	0/1:183:83,100:83:2962:100:3497:-259.855,0,-211.724	1/1:50:0,50:0:0:50:1737:-156.605,-15.0515,0	1/1:254:1,253:1:36:253:8913:-798.566,-72.8633,0	0/1:240:135,105:135:4831:105:3644:-255.917,0,-362.697	1/1:453:0,453:0:0:453:15956:-1435.75,-136.367,0	1/1:398:1,397:1:36:397:14042:-1259.96,-116.212,0	1/1:174:1,173:1:36:173:6128:-548.023,-48.7809,0	1/1:276:0,276:0:0:276:9799:-881.859,-83.0843,0	1/1:38:1,37:1:36:37:1289:-112.708,-7.84087,0	1/1:259:0,259:0:0:259:9109:-819.792,-77.9668,0	0/1:245:115,130:115:4120:130:4611:-341.403,0,-297.232	0/1:540:280,260:280:10005:260:9201:-665.508,0,-737.832	1/1:310:0,310:0:0:310:10992:-989.185,-93.3193,0	1/1:156:1,155:1:36:155:5490:-490.632,-43.3624,0	0/1:184:98,86:98:3482:86:3007:-215.474,0,-258.203	0/1:327:163,164:163:5827:164:5734:-417.748,0,-426.106	0/1:120:55,65:55:1949:65:2287:-169.966,0,-139.56	1/1:193:0,193:0:0:193:6807:-612.712,-58.0988,0	1/1:175:1,174:1:36:174:6141:-549.195,-49.082,0	1/1:151:0,151:0:0:151:5341:-480.827,-45.4555,0	0/1:338:163,175:163:5834:175:6184:-454.917,0,-423.422	0/1:150:92,58:92:3220:58:2028:-137.633,0,-244.869	1/1:299:0,299:0:0:299:10586:-952.667,-90.008,0	1/1:287:1,286:1:36:286:10172:-911.817,-82.7973,0
chr02	1914118	.	T	A	15018.3	PASS	AB=0.505322;ABP=3.44946;AC=25;AF=0.132979;AN=188;AO=907;CIGAR=1X;DP=6136;DPB=6136;DPRA=1.21417;EPP=1972.54;EPPR=11355.5;GTI=0;LEN=1;MEANALT=1.03448;MQM=59.9857;MQMR=59.9939;NS=94;NUMALT=1;ODDS=1.07648;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32326;QR=185847;RO=5228;RPL=907;RPP=1972.54;RPPR=11355.5;RPR=0;RUN=1;SAF=907;SAP=1972.54;SAR=0;SRF=5228;SRP=11355.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1800:0:0:0,-15.3525,-162.282	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/0:83:83,0:83:2929:0:0:0,-24.9855,-263.846	0/1:219:118,101:118:4165:101:3600:-258.282,0,-309.111	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:100:100,0:100:3554:0:0:0,-30.103,-320.069	0/0:90:89,1:89:3180:1:36:0,-23.4944,-282.826	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.898	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.295	0/0:20:20,0:20:695:0:0:0,-6.0206,-62.8714	0/0:72:72,0:72:2507:0:0:0,-21.6742,-225.883	0/0:61:61,0:61:2156:0:0:0,-18.3628,-194.308	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/0:57:57,0:57:2023:0:0:0,-17.1587,-182.342	0/1:35:20,15:20:711:15:536:-38.0388,0,-53.7796	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:133:71,61:71:2532:61:2192:-157.45,0,-188.036	0/1:101:50,51:50:1788:51:1815:-133.227,0,-130.799	0/0:107:107,0:107:3794:0:0:0,-32.2102,-341.66	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.927	0/1:68:33,35:33:1184:35:1252:-92.515,0,-86.3983	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.065	0/0:217:217,0:217:7714:0:0:0,-65.3235,-694.297	0/0:170:170,0:170:6053:0:0:0,-51.1751,-544.875	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:169:169,0:169:6029:0:0:0,-50.8741,-541.939	0/0:73:73,0:73:2593:0:0:0,-21.9752,-233.618	0/1:88:33,55:33:1188:55:1968:-150.904,0,-80.738	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:301:0:0:0,-2.70927,-27.4137	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3584	0/0:140:140,0:140:4944:0:0:0,-42.1442,-445.112	0/1:90:51,39:51:1824:39:1400:-99.2065,0,-137.348	0/1:26:9,17:9:324:17:604:-46.8638,0,-21.6791	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:119:119,0:119:4228:0:0:0,-35.8226,-380.703	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:109:109,0:109:3871:0:0:0,-32.8123,-348.587	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/1:33:18,15:18:640:15:540:-39.0025,0,-47.9953	0/0:118:118,0:118:4216:0:0:0,-35.5215,-379.621	0/1:71:22,49:22:780:49:1744:-135.871,0,-49.1499	0/0:167:167,0:167:5890:0:0:0,-50.272,-530.215	0/0:116:116,0:116:4135:0:0:0,-34.9195,-372.335	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:168:168,0:168:5969:0:0:0,-50.573,-537.321	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.142	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:84:35,49:35:1248:49:1741:-131.675,0,-87.3383	0/1:70:28,42:28:992:42:1458:-110.435,0,-68.5223	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:60:60,0:60:2123:0:0:0,-18.0618,-191.338	0/1:59:28,31:28:1004:31:1116:-82.9909,0,-72.9151	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:166:164,2:164:5847:2:72:0,-43.1343,-519.508	0/0:91:91,0:91:3248:0:0:0,-27.3937,-292.542	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.904	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/1:101:53,48:53:1891:48:1716:-124.322,0,-140.064	0/0:87:87,0:87:3082:0:0:0,-26.1896,-277.609	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/1:52:20,32:20:716:32:1148:-87.9763,0,-49.1142	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/0:131:131,0:131:4648:0:0:0,-39.4349,-418.484	0/1:76:45,31:45:1596:31:1078:-74.4467,0,-121.052	0/0:91:91,0:91:3224:0:0:0,-27.3937,-290.382	0/0:111:111,0:111:3947:0:0:0,-33.4143,-355.424	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:71:70,1:70:2497:1:36:0,-17.7749,-221.383	0/1:75:43,32:43:1500:32:1136:-79.9716,0,-112.713	0/1:183:92,91:92:3289:91:3230:-235.832,0,-241.139	0/0:44:43,1:43:1514:1:36:0,-9.64704,-132.953	0/0:25:25,0:25:880:0:0:0,-7.52575,-79.5177	0/1:21:16,5:16:576:5:180:-10.2304,0,-45.8534	0/1:72:40,32:40:1432:32:1148:-81.9557,0,-107.503	0/1:22:11,11:11:392:11:392:-28.9974,0,-28.9974	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:43:18,25:18:639:25:900:-68.3767,0,-44.894	0/1:40:14,26:14:492:26:928:-71.7971,0,-32.5711	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537
chr02	1940176	.	C	A	590843	PASS	AB=0.490561;ABP=8.66742;AC=162;AF=0.861702;AN=188;AO=21104;CIGAR=1X;DP=24861;DPB=24861;DPRA=0;EPP=45821.1;EPPR=8152.55;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.8342;MQMR=59.9989;NS=94;NUMALT=1;ODDS=2.11353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=753272;QR=133528;RO=3753;RPL=10334;RPP=22.57;RPPR=60.4215;RPR=10770;RUN=1;SAF=10335;SAP=22.391;SAR=10769;SRF=1719;SRP=60.4215;SRR=2034;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:154:0,154:0:0:154:5490:-494.184,-46.3586,0	1/1:316:0,316:0:0:316:11265:-1013.53,-95.1255,0	1/1:457:1,456:1:36:456:16318:-1464.44,-133.972,0	0/1:586:305,281:305:10847:281:10037:-726.08,0,-799.733	1/1:168:2,166:2:72:166:5911:-524.968,-43.7363,0	1/1:137:0,137:0:0:137:4877:-439.058,-41.2411,0	1/1:267:1,266:1:36:266:9511:-852.325,-76.7767,0	1/1:553:0,553:0:0:553:19742:-1775.84,-166.47,0	1/1:282:0,282:0:0:282:10019:-901.005,-84.8905,0	1/1:297:0,297:0:0:297:10590:-952.993,-89.4059,0	1/1:132:0,132:0:0:132:4704:-423.513,-39.736,0	1/1:207:0,207:0:0:207:7382:-664.209,-62.3132,0	1/1:210:0,210:0:0:210:7507:-675.626,-63.2163,0	0/1:176:91,85:91:3229:85:3018:-218.668,0,-237.851	1/1:215:0,215:0:0:215:7681:-691.31,-64.7215,0	0/1:153:77,76:77:2738:76:2707:-197.81,0,-200.605	1/1:139:0,139:0:0:139:4940:-444.741,-41.8432,0	1/1:130:0,130:0:0:130:4619:-415.776,-39.1339,0	1/1:107:0,107:0:0:107:3840:-345.786,-32.2102,0	0/1:469:242,227:242:8642:227:8130:-590.419,0,-636.59	0/1:417:234,183:234:8339:183:6539:-463.021,0,-624.99	1/1:254:0,254:0:0:254:9067:-815.996,-76.4616,0	1/1:302:4,298:4:144:298:10585:-939.231,-77.5974,0	0/1:345:169,176:169:6016:176:6271:-460.586,0,-437.691	1/1:187:0,187:0:0:187:6688:-601.988,-56.2926,0	1/1:794:1,793:1:36:793:28315:-2543.88,-235.42,0	1/1:678:0,678:0:0:678:24191:-2175.98,-204.098,0	1/1:100:0,100:0:0:100:3583:-322.662,-30.103,0	1/1:678:2,676:2:72:676:24188:-2169.42,-197.262,0	1/1:415:0,415:0:0:415:14790:-1330.7,-124.927,0	0/1:259:115,144:115:4087:144:5140:-384.769,0,-290.049	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:57:0,57:0:0:57:2031:-183.051,-17.1587,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:33:18,15:18:648:15:536:-38.6408,0,-48.7179	1/1:447:0,447:0:0:447:15961:-1436.04,-134.56,0	0/1:294:145,149:145:5169:149:5350:-393.054,0,-376.848	0/1:161:77,84:77:2751:84:3016:-223.18,0,-199.366	1/1:7:0,7:0:0:7:252:-23.015,-2.10721,0	1/1:431:0,431:0:0:431:15385:-1384.34,-129.744,0	1/1:106:0,106:0:0:106:3793:-341.507,-31.9092,0	1/1:441:3,438:3:108:438:15638:-1396.96,-122.679,0	1/1:176:0,176:0:0:176:6276:-564.924,-52.9813,0	0/1:154:89,65:89:3166:65:2328:-163.421,0,-238.806	1/1:330:0,330:0:0:330:11794:-1061.31,-99.3399,0	0/1:385:174,211:174:6208:211:7534:-562.085,0,-442.923	1/1:385:0,384:0:0:384:13661:-1228.72,-115.596,0	1/1:333:0,333:0:0:333:11868:-1067.97,-100.243,0	1/1:372:0,372:0:0:372:13286:-1195.5,-111.983,0	1/1:393:0,393:0:0:393:14056:-1264.8,-118.305,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:530:0,530:0:0:530:19014:-1710.81,-159.546,0	1/1:126:0,126:0:0:126:4503:-405.436,-37.9298,0	1/1:48:0,48:0:0:48:1728:-155.797,-14.4494,0	0/1:363:186,177:186:6612:177:6328:-460.3,0,-485.889	0/1:104:60,44:60:2130:44:1576:-110.824,0,-160.66	0/1:28:17,11:17:612:11:388:-26.8285,0,-46.9846	1/1:64:0,64:0:0:64:2285:-205.91,-19.2659,0	1/1:211:0,211:0:0:211:7537:-678.279,-63.5173,0	0/1:254:134,120:134:4755:120:4273:-308.068,0,-351.65	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:598:0,598:0:0:598:21318:-1917.67,-180.016,0	1/1:496:2,494:2:72:494:17636:-1579.97,-142.474,0	1/1:158:2,156:2:72:156:5572:-494.753,-40.726,0	1/1:249:1,248:1:36:248:8862:-793.961,-71.3582,0	0/1:469:233,236:233:8264:236:8441:-618.496,0,-602.593	1/1:352:4,348:4:144:348:12406:-1103.06,-92.6489,0	1/1:123:0,123:0:0:123:4392:-395.447,-37.0267,0	1/1:221:0,221:0:0:221:7829:-704.365,-66.5276,0	0/1:180:86,94:86:3049:94:3371:-249.395,0,-220.454	1/1:61:0,61:0:0:61:2146:-193.357,-18.3628,0	1/1:204:0,204:0:0:204:7232:-650.647,-61.4101,0	0/1:275:145,130:145:5149:130:4659:-336.687,0,-380.771	1/1:369:0,369:0:0:369:13149:-1183.2,-111.08,0	1/1:476:0,475:0:0:475:16960:-1525.09,-142.989,0	1/1:288:2,286:2:72:286:10191:-909.739,-79.8599,0	1/1:311:4,307:4:144:307:10972:-973.879,-80.3067,0	1/1:36:0,36:0:0:36:1271:-114.684,-10.8371,0	1/1:339:0,338:0:0:338:12095:-1088,-101.748,0	0/1:409:204,205:204:7207:205:7275:-531.621,0,-525.565	0/1:647:302,345:302:10767:345:12291:-911.224,0,-774.175	1/1:194:0,194:0:0:194:6923:-623.117,-58.3998,0	1/1:207:0,207:0:0:207:7431:-668.764,-62.3132,0	0/1:199:104,95:104:3707:95:3399:-246.211,0,-273.928	0/1:392:191,200:191:6792:200:7127:-523.414,0,-493.293	0/1:95:40,55:40:1424:55:1972:-149.157,0,-99.8596	1/1:185:0,185:0:0:185:6577:-591.979,-55.6906,0	1/1:160:0,160:0:0:160:5720:-514.665,-48.1648,0	1/1:158:0,158:0:0:158:5646:-508.218,-47.5627,0	0/1:250:131,119:131:4668:119:4230:-305.516,0,-345.026	0/1:213:154,59:154:5472:59:2120:-126.947,0,-428.491	1/1:322:0,322:0:0:322:11450:-1030.21,-96.9317,0	1/1:290:1,289:1:36:289:10343:-927.186,-83.7004,0
chr02	1940209	.	G	A	239176	PASS	AB=0.481621;ABP=14.6636;AC=160;AF=0.860215;AN=186;AO=10826;CIGAR=1X;DP=12913;DPB=12913;DPRA=0;EPP=23389.9;EPPR=4465.59;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.6919;MQMR=59.9722;NS=93;NUMALT=1;ODDS=1.4287;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=387839;QR=74342;RO=2083;RPL=10813;RPP=23398.6;RPPR=4465.59;RPR=13;RUN=1;SAF=1;SAP=23502.7;SAR=10825;SRF=0;SRP=4526.19;SRR=2083;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1773:-159.819,-15.0515,0	1/1:209:0,208:0:0:208:7447:-669.73,-62.6142,0	1/1:153:0,153:0:0:153:5482:-493.242,-46.0576,0	0/1:348:176,172:176:6268:172:6164:-449.32,0,-459.456	1/1:97:0,97:0:0:97:3484:-313.761,-29.1999,0	1/1:58:0,58:0:0:58:2080:-187.436,-17.4597,0	1/1:98:1,97:1:36:97:3480:-309.801,-25.9027,0	1/1:324:0,324:0:0:324:11610:-1044.16,-97.5337,0	1/1:141:0,141:0:0:141:5015:-451.414,-42.4452,0	1/1:215:0,215:0:0:215:7703:-693.294,-64.7215,0	1/1:54:0,54:0:0:54:1944:-175.227,-16.2556,0	1/1:79:0,79:0:0:79:2832:-255.022,-23.7814,0	1/1:78:0,78:0:0:78:2789:-251.216,-23.4803,0	0/1:89:49,40:49:1756:40:1436:-102.732,0,-131.532	1/1:111:0,111:0:0:111:3984:-358.731,-33.4143,0	0/1:72:35,37:35:1244:37:1328:-98.1151,0,-90.5905	1/1:97:1,95:1:27:95:3404:-303.822,-26.514,0	1/1:77:0,77:0:0:77:2768:-249.155,-23.1793,0	1/1:48:0,48:0:0:48:1724:-155.436,-14.4494,0	0/1:264:131,133:131:4659:133:4753:-348.348,0,-339.995	0/1:207:106,101:106:3804:101:3609:-262.661,0,-280.244	1/1:127:0,127:0:0:127:4564:-410.495,-38.2308,0	1/1:110:2,108:2:72:108:3864:-341.102,-26.2766,0	0/1:285:137,148:137:4864:148:5302:-391.494,0,-352.014	1/1:110:0,110:0:0:110:3919:-352.89,-33.1133,0	1/1:484:1,483:1:36:483:17279:-1550.68,-142.1,0	1/1:364:2,362:2:72:362:12948:-1157.9,-102.738,0	1/1:41:0,41:0:0:41:1471:-132.675,-12.3422,0	1/1:384:0,384:0:0:384:13788:-1240.69,-115.596,0	1/1:234:0,234:0:0:234:8383:-754.335,-70.441,0	0/1:127:63,64:63:2264:64:2300:-169.028,0,-165.792	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:17:0,17:0:0:17:612:-55.4042,-5.11751,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	1/1:221:0,221:0:0:221:7927:-713.332,-66.5276,0	0/1:199:99,100:99:3540:100:3592:-263.576,0,-258.904	0/1:69:33,36:33:1167:36:1296:-96.1484,0,-84.5653	.:.:.:.:.:.:.:.	1/1:174:0,174:0:0:174:6239:-561.554,-52.3792,0	1/1:42:0,42:0:0:42:1508:-136.005,-12.6433,0	1/1:217:4,213:4:144:213:7625:-672.897,-52.0099,0	1/1:101:0,101:0:0:101:3628:-326.667,-30.404,0	0/1:83:47,36:47:1684:36:1296:-91.9584,0,-126.862	1/1:126:1,125:1:36:125:4446:-396.216,-34.3315,0	0/1:211:105,106:105:3759:106:3764:-275.37,0,-274.992	1/1:258:2,256:2:72:256:9176:-818.831,-70.829,0	1/1:180:0,180:0:0:180:6447:-580.299,-54.1854,0	1/1:250:0,250:0:0:250:8964:-806.691,-75.2575,0	1/1:221:0,221:0:0:221:7924:-713.165,-66.5276,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:158:0,158:0:0:158:5671:-510.507,-47.5627,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:32:0,32:0:0:32:1144:-103.266,-9.63296,0	0/1:157:82,75:82:2912:75:2666:-192.891,0,-215.053	0/1:42:29,13:29:1040:13:468:-29.8164,0,-81.2711	0/1:25:15,10:15:521:10:360:-25.2186,0,-39.6906	1/1:37:0,37:0:0:37:1323:-119.371,-11.1381,0	1/1:69:0,69:0:0:69:2473:-222.777,-20.7711,0	0/1:121:64,57:64:2288:57:2022:-145.429,0,-169.757	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:441:0,441:0:0:441:15814:-1422.86,-132.754,0	1/1:236:1,234:1:36:234:8405:-752.831,-67.5036,0	1/1:119:2,117:2:72:117:4185:-369.981,-28.9858,0	1/1:117:0,117:0:0:117:4182:-376.556,-35.2205,0	0/1:246:133,113:133:4768:113:4043:-290.002,0,-355.094	1/1:137:4,133:4:144:133:4767:-415.856,-27.9275,0	1/1:31:0,31:0:0:31:1116:-100.747,-9.33193,0	1/1:135:0,135:0:0:135:4820:-433.819,-40.6391,0	0/1:119:58,61:58:2076:61:2194:-161.859,0,-151.288	1/1:34:0,34:0:0:34:1224:-110.465,-10.235,0	1/1:55:0,55:0:0:55:1976:-178.086,-16.5567,0	0/1:120:66,54:66:2336:54:1940:-138.595,0,-174.377	1/1:150:0,150:0:0:150:5388:-484.7,-45.1545,0	1/1:274:0,274:0:0:274:9828:-883.931,-82.4822,0	1/1:139:1,138:1:36:138:4929:-439.707,-38.2449,0	1/1:164:1,163:1:36:163:5825:-520.365,-45.7706,0	1/1:25:0,25:0:0:25:900:-81.3128,-7.52575,0	1/1:156:0,156:0:0:156:5583:-502.552,-46.9607,0	0/1:163:89,74:89:3182:74:2626:-187.31,0,-237.535	0/1:447:233,214:233:8312:214:7674:-556.091,0,-613.529	1/1:124:0,124:0:0:124:4452:-400.83,-37.3277,0	1/1:86:0,86:0:0:86:3071:-276.548,-25.8886,0	0/1:139:78,61:78:2792:61:2192:-155.695,0,-209.677	0/1:204:103,101:103:3688:101:3632:-265.664,0,-270.713	0/1:61:24,37:24:856:37:1332:-101.82,0,-58.9983	1/1:100:0,100:0:0:100:3576:-322.004,-30.103,0	1/1:78:0,78:0:0:78:2796:-251.629,-23.4803,0	1/1:52:0,52:0:0:52:1852:-166.918,-15.6536,0	0/1:67:32,35:32:1148:35:1260:-93.4257,0,-83.4608	0/1:101:70,31:70:2487:31:1116:-70.3453,0,-193.679	1/1:222:0,221:0:0:221:7935:-713.614,-66.5276,0	1/1:136:1,135:1:36:135:4844:-432.505,-37.3418,0
chr02	2113229	.	G	A	14163.9	PASS	AB=0.463877;ABP=31.7195;AC=26;AF=0.139785;AN=186;AO=1193;CIGAR=1X;DP=7820;DPB=7820;DPRA=1.49324;EPP=2593.58;EPPR=14389;GTI=0;LEN=1;MEANALT=1.05263;MQM=32.891;MQMR=45.9377;NS=93;NUMALT=1;ODDS=1.43622;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42746;QR=236832;RO=6625;RPL=0;RPP=2593.58;RPPR=14389;RPR=1193;RUN=1;SAF=1193;SAP=2593.58;SAR=0;SRF=6625;SRP=14389;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1400:0:0:0,-11.7402,-124.154	0/0:108:108,0:108:3853:0:0:0,-32.5112,-341.573	0/0:111:111,0:111:3965:0:0:0,-33.4143,-351.695	0/1:192:101,91:101:3567:91:3257:-196.14,0,-259.554	0/0:59:59,0:59:2120:0:0:0,-17.7608,-187.857	0/0:80:80,0:80:2838:0:0:0,-24.0824,-250.922	0/0:179:178,1:178:6384:1:36:0,-50.6967,-564.636	0/0:119:118,1:118:4208:1:36:0,-32.6349,-369.646	0/0:74:73,1:73:2620:1:36:0,-19.2217,-228.396	0/0:95:95,0:95:3397:0:0:0,-28.5978,-301.585	0/0:42:42,0:42:1504:0:0:0,-12.6433,-134.182	0/0:76:76,0:76:2732:0:0:0,-22.8783,-240.377	0/0:77:77,0:77:2753:0:0:0,-23.1793,-242.406	0/1:48:21,27:21:756:27:972:-60.2395,0,-52.6338	0/0:73:73,0:73:2624:0:0:0,-21.9752,-233.487	0/1:68:39,29:39:1387:29:1040:-61.209,0,-102.773	0/0:60:60,0:60:2160:0:0:0,-18.0618,-191.559	0/1:58:33,25:33:1158:25:885:-51.7622,0,-85.2657	0/0:28:28,0:28:1004:0:0:0,-8.42884,-88.6662	0/1:237:135,102:135:4772:102:3668:-214.635,0,-352.145	0/1:132:69,63:69:2427:63:2253:-137.225,0,-175.664	0/0:111:111,0:111:3965:0:0:0,-33.4143,-352.863	0/0:66:64,2:64:2285:2:72:0,-13.9331,-198.177	0/1:123:59,64:59:2093:64:2304:-141.491,0,-149.554	0/0:56:56,0:56:2008:0:0:0,-16.8577,-177.827	0/0:285:285,0:285:10198:0:0:0,-85.7935,-903.732	0/0:61:61,0:61:2184:0:0:0,-18.3628,-194.955	0/0:32:32,0:32:1144:0:0:0,-9.63296,-101.419	0/0:176:176,0:176:6267:0:0:0,-52.9813,-556.903	0/0:105:105,0:105:3780:0:0:0,-31.6081,-336.948	0/1:113:63,50:63:2256:50:1788:-105.65,0,-167.55	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4073	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.0574	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.7875	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.3306	0/1:9:3,6:3:108:6:212:-14.6394,0,-7.22657	0/0:173:171,2:171:6129:2:72:0,-46.1433,-536.214	0/1:172:97,75:97:3476:75:2665:-158.076,0,-256.981	0/1:43:19,24:19:654:24:864:-55.4998,0,-44.2764	.:.:.:.:.:.:.:.	0/0:117:117,0:117:4204:0:0:0,-35.2205,-373.916	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.1897	0/0:137:136,1:136:4877:1:36:0,-38.0535,-431.664	0/0:69:69,0:69:2471:0:0:0,-20.7711,-220.53	0/1:69:36,33:36:1283:33:1184:-72.3915,0,-93.4384	0/0:113:113,0:113:4060:0:0:0,-34.0164,-359.964	0/1:54:32,22:32:1137:22:792:-47.1781,0,-83.6202	0/0:57:57,0:57:2033:0:0:0,-17.1587,-181.553	0/0:101:101,0:101:3571:0:0:0,-30.404,-318.893	0/0:106:106,0:106:3808:0:0:0,-31.9092,-339.933	0/0:185:184,1:184:6563:1:30:0,-53.2358,-580.063	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.4947	0/0:132:132,0:132:4748:0:0:0,-39.736,-420.013	0/0:34:34,0:34:1209:0:0:0,-10.235,-107.15	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5168	0/1:103:53,50:53:1904:50:1800:-107.621,0,-138.313	0/1:38:23,15:23:828:15:536:-30.8815,0,-62.4076	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.97178	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.9917	0/0:75:75,0:75:2688:0:0:0,-22.5772,-237.902	0/1:129:73,56:73:2628:56:2012:-118.198,0,-195.436	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.2719	0/0:137:137,0:137:4893:0:0:0,-41.2411,-433.929	0/0:177:177,0:177:6315:0:0:0,-53.2823,-562.718	0/0:84:82,2:82:2952:2:72:0,-19.2908,-256.632	0/0:66:64,2:64:2296:2:68:0,-14.0015,-197.885	0/1:169:86,83:86:3054:83:2953:-177.844,0,-220.641	0/0:102:102,0:102:3664:0:0:0,-30.7051,-326.762	0/0:17:17,0:17:612:0:0:0,-5.11751,-54.8708	0/0:100:98,1:98:3524:1:36:0,-27.0451,-307.885	0/1:56:23,33:23:828:33:1188:-73.8508,0,-56.2573	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.1638	0/0:99:99,0:99:3522:0:0:0,-29.802,-310.687	0/1:49:25,24:25:881:24:860:-53.4908,0,-62.6343	0/0:191:190,1:190:6767:1:36:0,-54.3091,-598.582	0/0:152:152,0:152:5434:0:0:0,-45.7566,-484.169	0/0:42:42,0:42:1485:0:0:0,-12.6433,-132.167	0/0:64:60,3:60:2160:3:108:0,-10.3483,-182.557	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.74218	0/0:57:57,0:57:2052:0:0:0,-17.1587,-182.652	0/1:101:76,25:76:2736:25:896:-41.4555,0,-212.689	0/1:211:131,80:131:4658:80:2872:-159.06,0,-349.61	0/0:60:60,0:60:2148:0:0:0,-18.0618,-190.969	0/0:66:66,0:66:2376:0:0:0,-19.868,-212.043	0/1:83:29,54:29:1036:54:1936:-125.696,0,-67.7778	0/1:115:62,53:62:2224:53:1895:-111.934,0,-163.661	0/1:46:24,22:24:860:22:792:-49.7672,0,-62.0241	0/0:79:79,0:79:2836:0:0:0,-23.7814,-250.854	0/0:76:76,0:76:2728:0:0:0,-22.8783,-241.392	0/0:47:47,0:47:1688:0:0:0,-14.1484,-150.859	0/1:67:31,36:31:1108:36:1296:-81.154,0,-78.8134	0/1:48:15,33:15:536:33:1188:-78.007,0,-33.6966	0/0:67:67,0:67:2393:0:0:0,-20.169,-212.709	0/0:100:100,0:100:3565:0:0:0,-30.103,-318.046
chr02	2113271	.	G	T	140957	PASS	AB=0.536605;ABP=31.9435;AC=160;AF=0.860215;AN=186;AO=6563;CIGAR=1X;DP=7733;DPB=7733;DPRA=0;EPP=14254.4;EPPR=2526.26;GTI=0;LEN=1;MEANALT=1.05376;MQM=45.9253;MQMR=32.9957;NS=93;NUMALT=1;ODDS=1.95327;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=234620;QR=41548;RO=1162;RPL=6563;RPP=14254.4;RPPR=2526.26;RPR=0;RUN=1;SAF=6563;SAP=14254.4;SAR=0;SRF=1162;SRP=2526.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41:0:0:41:1453:-128.631,-12.3422,0	1/1:107:0,107:0:0:107:3844:-340.713,-32.2102,0	1/1:110:0,110:0:0:110:3939:-349.335,-33.1133,0	0/1:187:88,99:88:3160:99:3528:-257.365,0,-189.997	1/1:58:0,58:0:0:58:2084:-184.637,-17.4597,0	1/1:79:0,79:0:0:79:2818:-249.114,-23.7814,0	1/1:172:0,172:0:0:172:6151:-547.578,-51.7772,0	1/1:120:1,119:1:36:119:4267:-374.114,-32.936,0	1/1:74:0,74:0:0:74:2637:-232.559,-22.2762,0	1/1:93:0,93:0:0:93:3332:-296.144,-27.9958,0	1/1:42:1,41:1:36:41:1468:-127.345,-9.04499,0	1/1:77:0,76:0:0:76:2711:-238.594,-22.8783,0	1/1:76:0,76:0:0:76:2726:-240.304,-22.8783,0	0/1:48:27,21:27:972:21:752:-52.2897,0,-60.2395	1/1:73:0,73:0:0:73:2611:-232.402,-21.9752,0	0/1:67:29,38:29:1028:38:1364:-100.984,0,-61.0291	1/1:61:0,61:0:0:61:2187:-193.981,-18.3628,0	0/1:57:25,32:25:891:32:1139:-83.8858,0,-52.5534	1/1:29:2,27:2:72:27:955:-77.4387,-1.89315,0	0/1:232:101,131:101:3624:131:4695:-347.249,0,-212.931	0/1:133:63,70:63:2241:70:2474:-179.157,0,-136.386	1/1:110:0,107:0:0:107:3831:-340.572,-32.2102,0	1/1:63:2,61:2:72:61:2184:-189.183,-13.03,0	0/1:118:61,57:61:2183:57:2021:-144.655,0,-134.682	1/1:56:0,56:0:0:56:1991:-176.365,-16.8577,0	1/1:286:0,286:0:0:286:10208:-904.467,-86.0946,0	1/1:60:0,60:0:0:60:2111:-188.354,-18.0618,0	1/1:31:0,31:0:0:31:1116:-98.8954,-9.33193,0	1/1:174:0,174:0:0:174:6236:-553.721,-52.3792,0	1/1:104:0,104:0:0:104:3708:-330.626,-31.3071,0	0/1:110:49,61:49:1756:61:2196:-163.061,0,-103.693	1/1:5:0,5:0:0:5:180:-16.4073,-1.50515,0	1/1:5:0,5:0:0:5:176:-16.0574,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.3232,-1.50515,0	1/1:4:0,4:0:0:4:125:-10.9891,-1.20412,0	0/1:9:6,3:6:216:3:104:-6.88148,0,-14.8227	1/1:170:0,170:0:0:170:6048:-534.739,-51.1751,0	0/1:164:71,93:71:2517:93:3324:-247.02,0,-148.833	0/1:42:25,17:25:896:17:608:-40.7631,0,-58.8318	.:.:.:.:.:.:.:.	1/1:115:0,115:0:0:115:4105:-365.527,-34.6185,0	1/1:24:0,24:0:0:24:864:-77.3998,-7.22472,0	1/1:137:0,137:0:0:137:4908:-437.671,-41.2411,0	1/1:69:0,69:0:0:69:2464:-219.944,-20.7711,0	0/1:68:33,35:33:1188:35:1256:-91.3137,0,-72.8527	1/1:109:0,109:0:0:109:3895:-345.344,-32.8123,0	0/1:54:22,32:22:788:32:1148:-84.6242,0,-46.9972	1/1:56:0,56:0:0:56:2012:-179.667,-16.8577,0	1/1:98:0,98:0:0:98:3500:-312.529,-29.5009,0	1/1:104:0,104:0:0:104:3736:-333.554,-31.3071,0	1/1:182:1,181:1:36:181:6479:-572.819,-52.2288,0	1/1:7:0,7:0:0:7:252:-22.8424,-2.10721,0	1/1:132:0,132:0:0:132:4735:-418.793,-39.736,0	1/1:34:0,34:0:0:34:1215:-107.934,-10.235,0	1/1:6:0,6:0:0:6:216:-19.5168,-1.80618,0	0/1:100:48,51:48:1720:51:1804:-130.96,0,-103.375	0/1:38:15,23:15:532:23:824:-62.0637,0,-30.7206	1/1:3:0,3:0:0:3:108:-9.97178,-0.90309,0	1/1:13:0,13:0:0:13:468:-41.9917,-3.91339,0	1/1:72:0,72:0:0:72:2571:-227.633,-21.6742,0	0/1:129:56,73:56:1996:73:2611:-193.966,0,-117.538	1/1:5:0,5:0:0:5:180:-16.4073,-1.50515,0	1/1:137:0,137:0:0:137:4896:-432.829,-41.2411,0	1/1:175:0,173:0:0:173:6204:-552.478,-52.0782,0	1/1:84:1,83:1:36:83:2967:-260.559,-22.1629,0	1/1:64:0,64:0:0:64:2292:-202.888,-19.2659,0	0/1:164:79,85:79:2820:85:3043:-221.364,0,-169.394	1/1:101:0,101:0:0:101:3604:-321.451,-30.404,0	1/1:18:0,18:0:0:18:640:-57.3922,-5.41854,0	1/1:102:0,102:0:0:102:3668:-322.812,-30.7051,0	0/1:57:34,23:34:1192:23:828:-55.9563,0,-74.6311	1/1:15:0,15:0:0:15:540:-48.5086,-4.51545,0	1/1:98:0,98:0:0:98:3524:-310.773,-29.5009,0	0/1:47:23,24:23:824:24:860:-61.3534,0,-51.9733	1/1:188:0,188:0:0:188:6709:-596.366,-56.5936,0	1/1:153:0,152:0:0:152:5426:-483.601,-45.7566,0	1/1:41:0,41:0:0:41:1472:-130.955,-12.3422,0	1/1:64:3,61:3:108:61:2192:-184.969,-10.3406,0	1/1:2:0,2:0:0:2:72:-6.74218,-0.60206,0	1/1:58:0,58:0:0:58:2056:-183.067,-17.4597,0	0/1:102:25,77:25:900:77:2751:-213.811,0,-41.3352	0/1:208:78,130:78:2792:130:4635:-348.885,0,-154.101	1/1:61:0,61:0:0:61:2183:-194.079,-18.3628,0	1/1:67:0,67:0:0:67:2391:-213.44,-20.169,0	0/1:80:51,29:51:1824:29:1027:-67.8939,0,-118.005	0/1:115:53,62:53:1904:62:2220:-163.396,0,-111.987	0/1:45:22,23:22:784:23:824:-59.6052,0,-49.7065	1/1:76:0,76:0:0:76:2710:-239.804,-22.8783,0	1/1:75:0,75:0:0:75:2679:-237.094,-22.5773,0	1/1:49:0,49:0:0:49:1756:-156.927,-14.7505,0	0/1:65:35,30:35:1260:30:1063:-75.4262,0,-78.9448	0/1:47:32,15:32:1144:15:540:-34.3187,0,-75.1355	1/1:66:0,66:0:0:66:2372:-210.859,-19.868,0	1/1:102:0,102:0:0:102:3643:-324.998,-30.7051,0
chr02	2113315	.	G	A	22312.3	PASS	AB=0.449285;ABP=71.7294;AC=27;AF=0.143617;AN=188;AO=1389;CIGAR=1X;DP=9852;DPB=9852;DPRA=1.14672;EPP=3019.19;EPPR=18371.5;GTI=1;LEN=1;MEANALT=1.03125;MQM=58.9496;MQMR=59.9797;NS=94;NUMALT=1;ODDS=3.8303;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49667;QR=301762;RO=8459;RPL=0;RPP=3019.19;RPPR=18371.5;RPR=1389;RUN=1;SAF=0;SAP=3019.19;SAR=1389;SRF=0;SRP=18371.5;SRR=8459;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:175:175,0:175:6254:0:0:0,-52.6802,-562.765	0/0:97:97,0:97:3442:0:0:0,-29.1999,-309.987	0/1:213:129,84:129:4594:84:3019:-207.729,0,-349.504	0/0:94:94,0:94:3349:0:0:0,-28.2968,-301.626	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.74	0/0:243:243,0:243:8683:0:0:0,-73.1503,-781.458	0/0:141:141,0:141:5017:0:0:0,-42.4452,-451.678	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.92	0/0:104:104,0:104:3708:0:0:0,-31.3071,-333.921	0/0:70:68,2:68:2415:2:72:0,-14.2354,-210.767	0/0:67:67,0:67:2379:0:0:0,-20.169,-214.361	0/0:80:80,0:80:2848:0:0:0,-24.0824,-256.559	0/1:102:57,45:57:2014:45:1600:-113.527,0,-150.827	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:66:31,35:31:1088:35:1246:-92.5559,0,-78.3585	0/0:64:64,0:64:2245:0:0:0,-19.2659,-202.31	0/1:50:21,29:21:756:29:1044:-79.2057,0,-53.3157	0/0:33:33,0:33:1166:0:0:0,-9.93399,-105.246	0/1:237:133,104:133:4741:104:3726:-263.921,0,-355.504	0/1:142:75,67:75:2676:67:2388:-172.428,0,-198.337	0/0:129:129,0:129:4614:0:0:0,-38.8329,-415.422	0/0:93:93,0:93:3309:0:0:0,-27.9958,-297.984	0/1:106:60,46:60:2156:46:1637:-115.69,0,-162.398	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:346:345,0:345:12305:0:0:0,-103.855,-1107.08	0/0:97:97,0:97:3453:0:0:0,-29.1999,-310.982	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:242:242,0:242:8624:0:0:0,-72.8493,-776.155	0/0:166:166,0:166:5951:0:0:0,-49.971,-535.696	0/1:164:78,86:78:2780:86:3074:-227.339,0,-201.07	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:180:180,0:180:6437:0:0:0,-54.1854,-579.415	0/1:280:170,110:170:6013:110:3940:-270.433,0,-456.988	0/1:66:31,35:31:1098:35:1245:-92.4495,0,-79.2606	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:208:208,0:208:7415:0:0:0,-62.6142,-667.394	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:155:155,0:155:5501:0:0:0,-46.6596,-495.218	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:60:32,28:32:1139:28:1008:-72.9637,0,-84.7566	0/0:92:91,0:91:3250:0:0:0,-27.3937,-292.36	0/1:114:77,37:77:2742:37:1322:-84.9422,0,-212.704	0/0:137:137,0:137:4889:0:0:0,-41.2411,-440.117	0/0:141:140,0:140:5017:0:0:0,-42.1442,-451.314	0/0:159:159,0:159:5680:0:0:0,-47.8638,-511.248	0/0:210:210,0:210:7513:0:0:0,-63.2163,-676.141	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:201:201,0:201:7200:0:0:0,-60.507,-648.052	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:127:62,64:62:2232:64:2292:-168.216,0,-162.854	0/1:71:41,30:41:1452:30:1063:-74.5872,0,-109.6	0/1:10:9,1:9:320:1:36:-0.586969,0,-26.1321	0/0:19:18,1:18:644:1:36:0,-2.12129,-54.6923	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.253	0/1:165:86,79:86:3067:79:2814:-203.755,0,-226.571	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:166:166,0:166:5926:0:0:0,-49.971,-533.449	0/0:152:152,0:152:5397:0:0:0,-45.7566,-485.861	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.231	0/0:89:89,0:89:3179:0:0:0,-26.7917,-286.334	0/1:168:108,60:108:3852:60:2140:-142.088,0,-296.301	0/0:308:306,2:306:10936:2:72:0,-85.8814,-977.302	0/0:46:46,0:46:1634:0:0:0,-13.8474,-147.347	0/0:90:89,1:89:3196:1:36:0,-23.4944,-284.264	0/1:75:36,39:36:1288:39:1400:-103.633,0,-93.6339	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:103:103,0:103:3653:0:0:0,-31.0061,-328.973	0/1:40:16,24:16:561:24:864:-66.0214,0,-38.7759	0/0:189:189,0:189:6753:0:0:0,-56.8947,-607.843	0/0:187:187,0:187:6699:0:0:0,-56.2926,-602.985	0/0:89:89,0:89:3136:0:0:0,-26.7917,-282.464	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:100:99,1:99:3514:1:36:0,-26.5047,-312.87	0/1:132:87,45:87:3109:45:1616:-105.976,0,-240.3	0/1:223:124,99:124:4433:99:3535:-249.37,0,-332.01	0/0:126:126,0:126:4507:0:0:0,-37.9298,-405.797	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:83:39,44:39:1396:44:1576:-117.101,0,-100.953	0/1:154:76,78:76:2701:78:2790:-204.673,0,-196.974	0/1:47:28,19:28:995:19:684:-47.7243,0,-75.7156	0/0:83:83,0:83:2939:0:0:0,-24.9855,-264.743	0/0:85:85,0:85:3010:0:0:0,-25.5875,-271.13	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:102:61,41:61:2175:41:1463:-101.26,0,-165.311	0/1:65:17,48:17:586:48:1713:-134.825,0,-33.4958	0/0:142:142,0:142:5051:0:0:0,-42.7463,-454.735	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407
chr02	2113353	.	T	C	21834.7	PASS	AB=0.442345;ABP=91.6488;AC=27;AF=0.143617;AN=188;AO=1365;CIGAR=1X;DP=9900;DPB=9900;DPRA=1.25991;EPP=2967.07;EPPR=18532.2;GTI=1;LEN=1;MEANALT=1;MQM=58.9341;MQMR=59.9807;NS=94;NUMALT=1;ODDS=5.17168;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48877;QR=306037;RO=8533;RPL=1365;RPP=2967.07;RPPR=18532.2;RPR=0;RUN=1;SAF=0;SAP=2967.07;SAR=1365;SRF=0;SRP=18532.2;SRR=8533;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:173:173,0:173:6212:0:0:0,-52.0782,-558.984	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.393	0/1:215:132,83:132:4748:83:2980:-203.572,0,-362.754	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:245:245,0:245:8781:0:0:0,-73.7523,-790.274	0/0:143:143,0:143:5116:0:0:0,-43.0473,-460.583	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.239	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:102:57,45:57:2040:45:1612:-114.606,0,-153.167	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:65:31,34:31:1116:34:1212:-89.7993,0,-81.1847	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:50:22,28:22:792:28:1004:-75.6067,0,-56.5365	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:235:133,102:133:4768:102:3652:-257.567,0,-358.534	0/1:143:77,66:77:2752:66:2356:-169.234,0,-204.875	0/0:133:133,0:133:4761:0:0:0,-40.037,-428.645	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.01	0/1:106:60,46:60:2160:46:1656:-117.402,0,-162.757	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/0:350:350,0:350:12557:0:0:0,-105.36,-1129.95	0/0:98:98,0:98:3486:0:0:0,-29.5009,-313.949	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:240:240,0:240:8617:0:0:0,-72.2472,-775.52	0/0:169:169,0:169:6068:0:0:0,-50.8741,-546.22	0/1:165:80,85:80:2857:85:3048:-224.669,0,-207.696	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:13:8,5:8:269:5:180:-12.6387,0,-20.6227	0/0:182:182,0:182:6527:0:0:0,-54.7875,-587.509	0/1:285:171,114:171:6144:114:4056:-279.373,0,-467.263	0/1:66:31,35:31:1104:35:1256:-93.4421,0,-79.8027	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:210:210,0:210:7526:0:0:0,-63.2163,-677.376	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:154:154,0:154:5536:0:0:0,-46.3586,-498.362	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:56:29,27:29:1040:27:968:-70.5695,0,-77.0567	0/0:91:91,0:91:3261:0:0:0,-27.3937,-293.708	0/1:118:81,37:81:2893:37:1320:-83.5557,0,-225.083	0/0:141:141,0:141:5049:0:0:0,-42.4452,-454.508	0/0:142:141,1:141:5072:1:36:0,-39.148,-453.023	0/0:159:159,0:159:5720:0:0:0,-47.8638,-514.914	0/0:211:211,0:211:7572:0:0:0,-63.5173,-681.447	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:204:204,0:204:7320:0:0:0,-61.4101,-658.848	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:124:64,60:64:2296:60:2140:-155.513,0,-169.573	0/1:68:42,26:42:1504:26:928:-63.3586,0,-115.178	0/1:10:9,1:9:320:1:36:-0.586969,0,-26.1321	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:104:104,0:104:3725:0:0:0,-31.3071,-335.449	0/1:163:85,78:85:3052:78:2800:-203.097,0,-225.796	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:167:167,0:167:5977:0:0:0,-50.272,-538.035	0/0:153:152,0:152:5460:0:0:0,-45.7566,-491.166	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.306	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:172:110,62:110:3929:62:2216:-147.683,0,-302.024	0/0:313:311,2:311:11138:2:72:0,-87.3865,-995.469	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:92:91,1:91:3242:1:36:0,-24.0965,-288.4	0/1:71:35,36:35:1260:36:1296:-95.5386,0,-92.303	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/0:110:110,0:110:3956:0:0:0,-33.1133,-356.23	0/1:38:15,23:15:540:23:828:-63.385,0,-37.4974	0/0:185:183,2:183:6557:2:72:0,-48.8538,-583.373	0/0:185:184,0:184:6597:0:0:0,-55.3895,-593.596	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:99:98,1:98:3520:1:32:0,-26.6027,-313.809	0/1:134:89,45:89:3196:45:1589:-102.953,0,-247.525	0/1:224:126,98:126:4494:98:3516:-247.319,0,-337.196	0/0:126:126,0:126:4512:0:0:0,-37.9298,-406.246	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:84:40,44:40:1436:44:1584:-117.519,0,-104.251	0/1:153:77,76:77:2772:76:2732:-199.482,0,-203.662	0/1:47:29,18:29:1044:18:644:-44.1245,0,-80.1264	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:102:61,41:61:2184:41:1476:-102.431,0,-166.121	0/1:61:18,43:18:640:43:1544:-120.829,0,-39.5665	0/0:145:145,0:145:5216:0:0:0,-43.6493,-469.575	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084
chr02	2225397	.	CACG	TACA,CACA	177001	PASS	AB=0.594412,0.402127;ABP=163.741,175.159;AC=161,26;AF=0.856383,0.138298;AN=188;AO=7304,846;CIGAR=1X2M1X,3M1X;DP=8179;DPB=8179.25;DPRA=0,0.943709;EPP=15846.1,1840.08;EPPR=9.52472;GTI=2;LEN=4,1;MEANALT=1.58511,2.34375;MQM=59.9521,59.9574;MQMR=60;NS=94;NUMALT=2;ODDS=2.60268;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=255816,30325;QR=108;RO=3;RPL=2,1;RPP=15846.1,1831.4;RPPR=3.73412;RPR=7302,845;RUN=1,1;SAF=0,1;SAP=15863.4,1831.4;SAR=7304,845;SRF=1;SRP=3.73412;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,59,0:0:0:59,0:2089,0:-188.224,-17.7608,0,-188.224,-17.7608,-188.224	1/1:95:0,94,0:0:0:94,0:3250,0:-292.506,-28.2968,0,-292.506,-28.2968,-292.506	1/1:183:0,183,0:0:0:183,0:6378,0:-573.568,-55.0885,0,-573.568,-55.0885,-573.568	1/2:262:0,138,123:0:0:138,123:4828,4411:-752.664,-359.883,-318.341,-392.884,0,-355.858	1/1:95:0,95,0:0:0:95,0:3333,0:-300.192,-28.5979,0,-300.192,-28.5979,-300.192	1/1:42:0,42,0:0:0:42,0:1469,0:-132.503,-12.6433,0,-132.503,-12.6433,-132.503	1/1:46:0,46,0:0:0:46,0:1601,0:-144.376,-13.8474,0,-144.376,-13.8474,-144.376	1/1:248:0,247,0:0:0:247,0:8617,0:-775.191,-74.3544,0,-775.191,-74.3544,-775.191	1/1:94:0,94,0:0:0:94,0:3261,0:-293.716,-28.2968,0,-293.716,-28.2968,-293.716	1/1:75:0,75,0:0:0:75,0:2660,0:-239.647,-22.5773,0,-239.647,-22.5773,-239.647	1/1:15:0,15,0:0:0:15,0:531,0:-48.1227,-4.51545,0,-48.1227,-4.51545,-48.1227	1/1:30:0,30,0:0:0:30,0:1074,0:-96.973,-9.0309,0,-96.973,-9.0309,-96.973	1/1:21:0,21,0:0:0:21,0:736,0:-66.5621,-6.32163,0,-66.5621,-6.32163,-66.5621	1/2:10:0,6,4:0:0:6,4:209,144:-29.0983,-12.1095,-10.3033,-17.3439,0,-16.1398	1/1:24:0,24,0:0:0:24,0:863,0:-77.9925,-7.22472,0,-77.9925,-7.22472,-77.9925	1/2:15:0,6,9:0:0:6,9:215,324:-44.3307,-26.7966,-24.9904,-17.893,0,-15.1837	1/1:11:0,11,0:0:0:11,0:394,0:-35.8016,-3.31133,0,-35.8016,-3.31133,-35.8016	1/2:16:0,6,10:0:0:6,10:205,360:-46.2338,-29.6032,-27.797,-16.9785,0,-13.9682	0/1:7:1,6,0:1:36:6,0:214,0:-17.5006,0,-1.49106,-17.8016,-3.29724,-20.7395	1/2:222:0,137,83:0:0:137,83:4795,2976:-632.894,-242.776,-201.535,-390.162,0,-365.177	1/2:133:0,65,68:0:0:65,68:2286,2411:-382.855,-196.774,-177.207,-186.435,0,-165.965	1/1:198:0,196,0:0:0:196,0:6849,0:-616.214,-59.0019,0,-616.214,-59.0019,-616.214	1/1:189:0,189,0:0:0:189,0:6594,0:-593.557,-56.8947,0,-593.557,-56.8947,-593.557	1/2:52:0,28,24:0:0:28,24:984,864:-150.946,-70.8578,-62.429,-80.4436,0,-73.2189	1/1:97:0,97,0:0:0:97,0:3384,0:-304.756,-29.1999,0,-304.756,-29.1999,-304.756	1/1:300:0,300,0:0:0:300,0:10492,0:-944.227,-90.309,0,-944.227,-90.309,-944.227	1/1:215:0,214,0:0:0:214,0:7484,0:-673.391,-64.4204,0,-673.391,-64.4204,-673.391	1/1:10:0,10,0:0:0:10,0:352,0:-32.0183,-3.0103,0,-32.0183,-3.0103,-32.0183	1/1:334:0,333,0:0:0:333,0:11701,0:-1051.78,-100.243,0,-1051.78,-100.243,-1051.78	1/1:153:0,151,0:0:0:151,0:5287,0:-475.665,-45.4555,0,-475.665,-45.4555,-475.665	1/2:110:0,71,38:0:0:71,38:2485,1360:-313.078,-110.902,-89.5286,-202.171,0,-190.732	1/1:5:0,5,0:0:0:5,0:172,0:-15.8174,-1.50515,0,-15.8174,-1.50515,-15.8174	1/1:7:0,7,0:0:0:7,0:245,0:-22.3905,-2.10721,0,-22.3905,-2.10721,-22.3905	1/1:1:0,1,0:0:0:1,0:35,0:-3.49863,-0.30103,0,-3.49863,-0.30103,-3.49863	1/1:8:0,8,0:0:0:8,0:276,0:-25.1752,-2.40824,0,-25.1752,-2.40824,-25.1752	1/2:10:0,5,5:0:0:5,5:179,180:-29.6433,-15.0469,-13.5418,-14.9552,0,-13.4501	1/1:48:0,48,0:0:0:48,0:1718,0:-154.906,-14.4494,0,-154.906,-14.4494,-154.906	1/2:137:1,94,42:1:36:94,42:3260,1495:-383.578,-118.903,-93.544,-262.031,0,-252.325	1/2:5:0,3,2:0:0:3,2:97,72:-14.0364,-6.23466,-5.33157,-8.1469,0,-7.54484	1/1:4:0,4,0:0:0:4,0:137,0:-12.6674,-1.20412,0,-12.6674,-1.20412,-12.6674	1/1:158:0,155,0:0:0:155,0:5428,0:-488.39,-46.6597,0,-488.39,-46.6597,-488.39	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/1:271:0,271,0:0:0:271,0:9488,0:-853.903,-81.5791,0,-853.903,-81.5791,-853.903	1/1:12:0,12,0:0:0:12,0:430,0:-39.0402,-3.61236,0,-39.0402,-3.61236,-39.0402	1/2:15:0,10,5:0:0:10,5:354,180:-43.8783,-15.0469,-12.0366,-29.1892,0,-27.684	1/1:152:0,152,0:0:0:152,0:5327,0:-479.574,-45.7566,0,-479.574,-45.7566,-479.574	1/2:152:0,123,29:0:0:123,29:4285,1036:-433.276,-84.824,-47.7974,-348.808,0,-340.078	1/1:196:0,194,0:0:0:194,0:6817,0:-613.122,-58.3998,0,-613.122,-58.3998,-613.122	1/1:102:0,102,0:0:0:102,0:3585,0:-322.861,-30.7051,0,-322.861,-30.7051,-322.861	1/1:114:0,114,0:0:0:114,0:3982,0:-358.538,-34.3174,0,-358.538,-34.3174,-358.538	1/1:96:0,96,0:0:0:96,0:3367,0:-303.251,-28.8989,0,-303.251,-28.8989,-303.251	1/1:10:0,10,0:0:0:10,0:356,0:-32.3816,-3.0103,0,-32.3816,-3.0103,-32.3816	1/1:115:0,114,0:0:0:114,0:4009,0:-360.707,-34.3174,0,-360.707,-34.3174,-360.707	1/1:103:0,103,0:0:0:103,0:3641,0:-327.898,-31.0061,0,-327.898,-31.0061,-327.898	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:127:0,69,58:0:0:69,58:2371,2088:-363.249,-170.725,-149.954,-192.876,0,-175.416	1/2:40:0,28,12:0:0:28,12:999,432:-117.046,-35.6088,-27.18,-81.7964,0,-78.1841	1/1:1:0,1,0:0:0:1,0:36,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chr02	2254667	.	G	A	104917	PASS	AB=0.502053;ABP=3.07271;AC=161;AF=0.856383;AN=188;AO=4806;CIGAR=1X;DP=5670;DPB=5670;DPRA=0;EPP=10439.1;EPPR=1879.16;GTI=0;LEN=1;MEANALT=1;MQM=59.9923;MQMR=59.978;NS=94;NUMALT=1;ODDS=2.60065;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171164;QR=30226;RO=864;RPL=4806;RPP=10439.1;RPPR=1879.16;RPR=0;RUN=1;SAF=4806;SAP=10439.1;SAR=0;SRF=864;SRP=1879.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1072:-96.4744,-9.0309,0	1/1:72:0,72:0:0:72:2568:-231.37,-21.6742,0	1/1:71:1,70:1:36:70:2495:-221.204,-17.7749,0	0/1:78:45,33:45:1586:33:1176:-82.6674,0,-119.549	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:77:0,77:0:0:77:2751:-247.832,-23.1793,0	1/1:121:0,121:0:0:121:4308:-387.897,-36.4246,0	1/1:78:0,78:0:0:78:2770:-249.542,-23.4803,0	1/1:35:1,34:1:36:34:1224:-106.869,-6.93778,0	1/1:49:0,49:0:0:49:1730:-155.983,-14.7505,0	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	1/1:63:0,63:0:0:63:2223:-200.335,-18.9649,0	0/1:56:30,26:30:1021:26:910:-65.357,0,-75.3375	1/1:44:0,44:0:0:44:1545:-139.34,-13.2453,0	0/1:77:47,30:47:1652:30:1080:-74.3339,0,-125.786	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	0/1:24:13,11:13:428:11:396:-28.758,0,-31.6108	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:74:39,35:39:1362:35:1250:-90.5278,0,-100.601	0/1:131:66,65:66:2324:65:2311:-168.815,0,-169.984	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:90:0,90:0:0:90:3211:-289.213,-27.0927,0	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:155:0,155:0:0:155:5539:-498.635,-46.6597,0	1/1:144:0,144:0:0:144:5147:-463.372,-43.3483,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:96:0,96:0:0:96:3424:-308.375,-28.8989,0	1/1:105:0,105:0:0:105:3733:-336.171,-31.6082,0	0/1:44:24,20:24:829:20:716:-51.5224,0,-61.6786	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:20:0,20:0:0:20:699:-63.2311,-6.0206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.0976	1/1:96:0,96:0:0:96:3398:-306.035,-28.8989,0	0/1:93:50,43:50:1759:43:1532:-110.177,0,-130.597	0/1:38:17,21:17:591:21:748:-56.2062,0,-42.0761	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:62:0,62:0:0:62:2206:-198.804,-18.6639,0	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	1/1:94:0,94:0:0:94:3364:-302.976,-28.2968,0	1/1:39:0,39:0:0:39:1383:-124.768,-11.7402,0	0/1:34:17,17:17:587:17:603:-44.3645,0,-42.9188	1/1:83:0,83:0:0:83:2964:-266.993,-24.9855,0	0/1:60:36,24:36:1279:24:854:-59.1187,0,-97.3506	1/1:107:0,107:0:0:107:3822:-344.178,-32.2102,0	1/1:86:2,84:2:63:84:3003:-264.518,-19.9054,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:81:0,81:0:0:81:2873:-258.808,-24.3834,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:73:1,72:1:36:72:2592:-229.93,-18.3769,0	1/1:77:0,77:0:0:77:2751:-247.832,-23.1793,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:104:49,55:49:1711:55:1959:-145.278,0,-122.965	0/1:60:16,44:16:563:44:1576:-124.07,0,-32.9374	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:37:0,37:0:0:37:1305:-117.749,-11.1381,0	0/1:87:48,39:48:1668:39:1372:-97.5878,0,-124.214	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	1/1:91:0,91:0:0:91:3257:-293.351,-27.3937,0	1/1:55:2,53:2:72:53:1869:-161.651,-9.71993,0	1/1:28:0,28:0:0:28:983:-88.7824,-8.42884,0	0/1:124:58,66:58:2068:66:2325:-172.182,0,-149.063	1/1:214:3,211:3:108:211:7473:-662.52,-54.3453,0	1/1:40:0,40:0:0:40:1415:-127.647,-12.0412,0	1/1:20:0,20:0:0:20:701:-63.4117,-6.0206,0	0/1:50:24,26:24:830:26:932:-69.1474,0,-59.9634	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	1/1:85:0,85:0:0:85:3013:-271.4,-25.5876,0	0/1:74:37,37:37:1291:37:1316:-96.4656,0,-94.2112	1/1:172:0,172:0:0:172:6155:-554.049,-51.7772,0	1/1:62:1,61:1:36:61:2188:-193.587,-15.0656,0	1/1:81:1,80:1:36:80:2846:-252.779,-20.7852,0	1/1:50:2,48:2:72:48:1720:-148.249,-8.21478,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:45:1,44:1:36:44:1580:-138.893,-9.94808,0	0/1:49:25,24:25:892:24:852:-62.2499,0,-65.8492	0/1:134:61,73:61:2154:73:2589:-192.92,0,-153.789	1/1:32:0,32:0:0:32:1121:-101.195,-9.63296,0	1/1:43:0,43:0:0:43:1522:-137.272,-12.9443,0	0/1:30:19,11:19:648:11:396:-26.9518,0,-49.6062	0/1:97:46,51:46:1600:51:1803:-133.351,0,-115.086	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:33:0,33:0:0:33:1170:-105.606,-9.93399,0	0/1:110:41,69:41:1407:69:2440:-186.741,0,-93.806	0/1:47:27,20:27:941:20:720:-50.9804,0,-70.853	1/1:39:0,39:0:0:39:1382:-124.679,-11.7402,0	1/1:85:0,85:0:0:85:3009:-271.042,-25.5876,0
chr02	2275569	.	CTG	CTA	155494	PASS	AB=0.463243;ABP=36.3737;AC=160;AF=0.851064;AN=188;AO=7143;CIGAR=2M1X;DP=8708;DPB=8708.67;DPRA=31.2007;EPP=15513.8;EPPR=3336.23;GTI=4;LEN=1;MEANALT=1.22581;MQM=59.9573;MQMR=59.9656;NS=94;NUMALT=1;ODDS=0.00736077;PAIRED=0;PAIREDR=0;PAO=1;PQA=34;PQR=0;PRO=0;QA=254980;QR=54430;RO=1539;RPL=0;RPP=15513.8;RPPR=3344.91;RPR=7143;RUN=1;SAF=7143;SAP=15513.8;SAR=0;SRF=1538;SRP=3336.23;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1317:-118.806,-11.1381,0	1/1:177:0,176:0:0:176:6251:-562.218,-52.9813,0	1/1:81:0,81:0:0:81:2894:-260.695,-24.3834,0	0/1:315:148,166:148:5253:166:5932:-439.126,0,-378.045	1/1:99:0,99:0:0:99:3540:-318.808,-29.802,0	1/1:73:0,73:0:0:73:2597:-233.977,-21.9752,0	1/1:99:0,99:0:0:99:3548:-319.52,-29.802,0	1/1:209:1,204:1:36:204:7236:-647.506,-58.4727,0	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	1/1:113:0,112:0:0:112:4001:-359.915,-33.7154,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:54:27,27:27:967:27:972:-71.5423,0,-71.0915	1/1:43:1,42:1:36:42:1504:-132.466,-9.75667,0	0/1:40:27,13:27:957:13:460:-29.6942,0,-74.4037	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:42:20,22:20:712:22:788:-58.6015,0,-51.7638	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	0/1:157:74,83:74:2632:83:2984:-221.53,0,-189.865	0/1:148:80,68:80:2855:68:2398:-171.512,0,-212.636	1/1:126:0,126:0:0:126:4491:-404.359,-37.9298,0	1/1:94:2,92:2:72:92:3293:-289.751,-21.4601,0	0/1:139:89,50:89:3168:50:1767:-117.467,0,-243.503	1/1:64:0,63:0:0:63:2252:-202.711,-18.9649,0	1/1:279:0,278:0:0:278:9926:-892.919,-83.6863,0	1/1:185:0,184:0:0:184:6527:-587.151,-55.3895,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:240:0,240:0:0:240:8558:-770.163,-72.2472,0	1/1:208:0,207:0:0:207:7369:-663.004,-62.3132,0	0/1:111:49,61:49:1708:61:2180:-163.032,0,-120.567	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:5,1:5:178:1:36:-1.79209,0,-14.5625	1/1:187:0,187:0:0:187:6681:-601.309,-56.2926,0	0/1:279:144,134:144:5071:134:4800:-348.05,0,-372.434	0/1:35:27,8:27:942:8:288:-15.7314,0,-74.5554	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:168:0,167:0:0:167:5923:-532.86,-50.272,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:98:0,98:0:0:98:3478:-313.23,-29.5009,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:51:27,23:27:964:23:824:-59.0721,0,-71.6655	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	0/1:99:43,56:43:1518:56:1989:-149.48,0,-107.109	1/1:144:1,143:1:36:143:5085:-454.192,-39.75,0	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	1/1:161:0,161:0:0:161:5768:-519.235,-48.4658,0	1/1:128:0,127:0:0:127:4514:-406.087,-38.2308,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:125:1,124:1:28:124:4390:-392.463,-34.829,0	1/1:26:0,26:0:0:26:913:-82.4262,-7.82678,0	1/1:18:0,17:0:0:17:604:-54.331,-5.11751,0	0/1:126:53,73:53:1875:73:2589:-195.254,0,-131.097	0/1:60:35,25:35:1197:25:880:-61.4403,0,-89.9647	0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:101:0,101:0:0:101:3593:-323.573,-30.404,0	0/1:100:65,35:65:2298:35:1256:-83.2423,0,-176.749	1/1:12:0,12:0:0:12:413:-37.4978,-3.61236,0	1/1:284:1,281:1:34:281:10050:-901.099,-81.7981,0	1/1:143:1,142:1:36:142:5075:-453.296,-39.449,0	1/1:77:6,71:6:216:71:2540:-209.061,-3.3888,0	1/1:98:0,98:0:0:98:3477:-313.142,-29.5009,0	0/1:194:103,91:103:3613:91:3264:-235.566,0,-266.979	1/1:110:0,109:0:0:109:3883:-349.304,-32.8123,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	0/1:66:36,30:36:1273:30:1076:-77.2849,0,-95.0024	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	0/1:57:29,28:29:1037:28:1004:-73.5172,0,-76.4856	1/1:118:0,118:0:0:118:4210:-379.077,-35.5215,0	1/1:167:0,167:0:0:167:5939:-534.617,-50.272,0	1/1:107:1,106:1:36:106:3792:-337.879,-28.6119,0	1/1:99:1,98:1:36:98:3520:-313.41,-26.2037,0	1/1:18:0,15:0:0:15:536:-48.221,-4.51545,0	1/1:105:0,105:0:0:105:3752:-337.876,-31.6082,0	0/1:99:42,56:42:1479:56:2008:-151.133,0,-103.542	0/1:284:162,121:162:5737:121:4332:-304.504,0,-430.899	1/1:93:0,93:0:0:93:3344:-301.176,-27.9958,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:80:45,35:45:1584:35:1260:-89.6231,0,-118.767	0/1:126:74,52:74:2618:52:1868:-130.469,0,-197.936	0/1:44:29,15:29:1018:15:540:-35.6912,0,-78.6857	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:59:32,26:32:1150:26:936:-66.8764,0,-86.128	0/1:72:54,18:54:1918:18:648:-36.9777,0,-151.222	1/1:101:1,100:1:36:100:3580:-318.809,-26.8058,0	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0
chr02	2275600	.	CATA	CACG,CATG	188188	PASS	AB=0.470862,0.526278;ABP=23.6373,19.7866;AC=160,28;AF=0.851064,0.148936;AN=188;AO=7168,1488;CIGAR=2M2X,3M1X;DP=8699;DPB=8699;DPRA=31.1685,1.22728;EPP=15568.1,3234.16;EPPR=0;GTI=3;LEN=2,1;MEANALT=1.74194,2.25714;MQM=59.9443,59.9671;MQMR=0;NS=94;NUMALT=2;ODDS=0.783111;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=252905,53209;QR=0;RO=0;RPL=7168,1488;RPP=15568.1,3234.16;RPPR=0;RPR=0,0;RUN=1,1;SAF=7168,1488;SAP=15568.1,3234.16;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38,0:0:0:38,0:1358,0:-122.093,-11.4391,0,-122.093,-11.4391,-122.093	1/1:175:0,173,0:0:0:173,0:6042,0:-543.54,-52.0782,0,-543.54,-52.0782,-543.54	1/1:81:0,81,0:0:0:81,0:2881,0:-259.526,-24.3834,0,-259.526,-24.3834,-259.526	1/2:313:0,168,145:0:0:168,145:5930,5204:-907.732,-424.848,-374.275,-483.24,0,-439.59	1/1:100:0,100,0:0:0:100,0:3533,0:-318.179,-30.103,0,-318.179,-30.103,-318.179	1/1:76:0,76,0:0:0:76,0:2667,0:-240.273,-22.8783,0,-240.273,-22.8783,-240.273	1/1:99:0,99,0:0:0:99,0:3502,0:-315.382,-29.802,0,-315.382,-29.802,-315.382	1/1:208:0,207,1:0:0:207,1:7307,36:-657.294,-62.3132,0,-654.356,-59.016,-654.055	1/1:76:0,76,0:0:0:76,0:2675,0:-240.994,-22.8783,0,-240.994,-22.8783,-240.994	1/1:113:0,113,0:0:0:113,0:3967,0:-357.223,-34.0164,0,-357.223,-34.0164,-357.223	1/1:31:0,30,0:0:0:30,0:1069,0:-96.3173,-9.0309,0,-96.3173,-9.0309,-96.3173	1/1:55:0,55,0:0:0:55,0:1924,0:-173.434,-16.5567,0,-173.434,-16.5567,-173.434	1/1:40:0,40,0:0:0:40,0:1413,0:-127.466,-12.0412,0,-127.466,-12.0412,-127.466	1/2:53:0,26,26:0:0:26,26:920,927:-150.594,-75.657,-67.8302,-75.0265,0,-67.1998	1/1:42:0,40,2:0:0:40,2:1367,72:-122.981,-12.0412,0,-117.476,-6.19666,-116.874	1/2:38:0,12,26:0:0:12,26:417,928:-109.91,-76.0115,-72.3991,-34.2484,0,-26.4216	1/1:47:0,47,0:0:0:47,0:1637,0:-147.615,-14.1484,0,-147.615,-14.1484,-147.615	1/2:41:0,22,19:0:0:22,19:768,684:-118.632,-56.1708,-49.5481,-62.8164,0,-57.0968	1/1:18:0,17,1:0:0:17,1:604,36:-54.3315,-5.11751,0,-51.3938,-1.82027,-51.0928	1/2:156:0,83,72:0:0:83,72:2935,2568:-448.376,-209.334,-184.349,-239.037,0,-217.363	1/2:146:0,70,76:0:0:70,76:2478,2728:-424.728,-222.884,-201.812,-202.2,0,-179.322	1/1:127:0,127,0:0:0:127,0:4460,0:-401.572,-38.2308,0,-401.572,-38.2308,-401.572	1/1:92:0,92,0:0:0:92,0:3279,0:-295.33,-27.6948,0,-295.33,-27.6948,-295.33	1/2:136:0,50,86:0:0:50,86:1776,3092:-397.332,-252.618,-237.567,-145.071,0,-119.182	1/1:65:0,64,0:0:0:64,0:2244,0:-201.91,-19.2659,0,-201.91,-19.2659,-201.91	1/1:282:0,279,0:0:0:279,0:9866,0:-887.565,-83.9874,0,-887.565,-83.9874,-887.565	1/1:187:0,184,0:0:0:184,0:6495,0:-584.279,-55.3895,0,-584.279,-55.3895,-584.279	1/1:26:0,26,0:0:0:26,0:925,0:-83.568,-7.82678,0,-83.568,-7.82678,-83.568	1/1:240:0,237,0:0:0:237,0:8355,0:-751.627,-71.3441,0,-751.627,-71.3441,-751.627	1/1:210:0,209,0:0:0:209,0:7393,0:-665.052,-62.9153,0,-665.052,-62.9153,-665.052	1/2:111:0,61,50:0:0:61,50:2176,1796:-324.256,-146.871,-128.508,-177.743,0,-162.692	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/1:14:0,13,0:0:0:13,0:466,0:-41.9931,-3.91339,0,-41.9931,-3.91339,-41.9931	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:7:0,2,5:0:0:2,5:56,180:-19.4604,-15.0469,-14.4449,-4.71626,0,-3.21111	1/1:188:0,188,0:0:0:188,0:6629,0:-596.64,-56.5936,0,-596.64,-56.5936,-596.64	1/2:275:0,131,141:0:0:131,141:4650,5030:-788.915,-410.043,-370.608,-378.868,0,-336.423	1/2:32:0,8,24:0:0:8,24:288,851:-93.1854,-69.6847,-67.2765,-23.8592,0,-16.6344	1/1:2:0,2,0:0:0:2,0:70,0:-6.64733,-0.60206,0,-6.64733,-0.60206,-6.64733	1/1:168:0,165,1:0:0:165,1:5790,36:-520.858,-49.67,0,-517.921,-46.7325,-517.62	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:100:0,100,0:0:0:100,0:3516,0:-316.649,-30.103,0,-316.649,-30.103,-316.649	1/1:60:0,59,0:0:0:59,0:2068,0:-186.177,-17.7608,0,-186.177,-17.7608,-186.177	1/2:49:0,23,26:0:0:23,26:810,928:-141.954,-76.0115,-69.0878,-66.2968,0,-58.47	1/1:102:0,101,0:0:0:101,0:3585,0:-322.567,-30.404,0,-322.567,-30.404,-322.567	1/2:98:0,56,42:0:0:56,42:1988,1500:-284.63,-122.651,-105.794,-162.335,0,-149.692	1/1:147:0,147,0:0:0:147,0:5180,0:-466.335,-44.2514,0,-466.335,-44.2514,-466.335	1/1:77:0,77,0:0:0:77,0:2720,0:-245.043,-23.1793,0,-245.043,-23.1793,-245.043	1/1:161:0,159,0:0:0:159,0:5613,0:-504.934,-47.8638,0,-504.934,-47.8638,-504.934	1/1:128:0,128,0:0:0:128,0:4512,0:-406.25,-38.5318,0,-406.25,-38.5318,-406.25	1/1:5:0,5,0:0:0:5,0:178,0:-16.3686,-1.50515,0,-16.3686,-1.50515,-16.3686	1/1:126:0,123,0:0:0:123,0:4373,0:-393.448,-37.0267,0,-393.448,-37.0267,-393.448	1/1:27:0,27,0:0:0:27,0:950,0:-85.814,-8.12781,0,-85.814,-8.12781,-85.814	1/1:17:0,17,0:0:0:17,0:579,0:-52.4283,-5.11751,0,-52.4283,-5.11751,-52.4283	1/2:125:0,73,52:0:0:73,52:2559,1868:-360.78,-152.746,-130.771,-208.39,0,-192.736	1/2:55:0,24,31:0:0:24,31:838,1093:-157.507,-89.3457,-82.121,-68.5114,0,-59.1795	2/2:3:0,0,3:0:0:0,3:0,104:-9.7028,-9.70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chr02	2275661	.	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chr02	2275669	.	C	A	157658	PASS	AB=0.472605;ABP=19.5476;AC=161;AF=0.856383;AN=188;AO=7207;CIGAR=1X;DP=8558;DPB=8558;DPRA=0;EPP=15652.8;EPPR=2925.81;GTI=0;LEN=1;MEANALT=1.05319;MQM=54.7235;MQMR=53.5208;NS=94;NUMALT=1;ODDS=1.16272;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257125;QR=48159;RO=1346;RPL=0;RPP=15652.8;RPPR=2925.81;RPR=7207;RUN=1;SAF=0;SAP=15652.8;SAR=7207;SRF=0;SRP=2925.81;SRR=1346;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:83:0,83:0:0:83:2950:-263.331,-24.9855,0	1/1:74:0,74:0:0:74:2613:-233.851,-22.2762,0	1/1:117:0,117:0:0:117:4173:-373.866,-35.2205,0	0/1:194:112,82:112:3997:82:2923:-204.586,0,-299.542	1/1:99:0,99:0:0:99:3551:-319.082,-29.802,0	1/1:68:0,68:0:0:68:2423:-217.82,-20.47,0	1/1:60:0,60:0:0:60:2144:-193.067,-18.0618,0	1/1:130:0,130:0:0:130:4659:-418.088,-39.1339,0	1/1:108:0,108:0:0:108:3852:-345.916,-32.5112,0	1/1:60:0,59:0:0:59:2092:-188.085,-17.7608,0	1/1:37:0,37:0:0:37:1311:-118.174,-11.1381,0	1/1:77:0,77:0:0:77:2728:-245.139,-23.1793,0	1/1:45:0,45:0:0:45:1603:-144.111,-13.5464,0	0/1:57:24,33:24:855:33:1172:-88.5128,0,-59.8613	1/1:60:0,60:0:0:60:2151:-193.667,-18.0618,0	0/1:47:27,20:27:959:20:712:-50.0778,0,-72.2828	1/1:25:1,24:1:36:24:856:-73.0047,-3.92748,0	0/1:34:19,15:19:676:15:531:-37.8053,0,-50.6584	1/1:20:1,19:1:36:19:684:-58.1519,-2.42233,0	0/1:98:49,49:49:1752:49:1760:-128.871,0,-128.245	0/1:142:70,72:70:2512:72:2562:-187.263,0,-182.667	1/1:136:0,136:0:0:136:4843:-435.511,-40.9401,0	1/1:139:3,136:3:108:136:4847:-425.788,-31.768,0	0/1:84:38,46:38:1364:46:1633:-121.507,0,-97.4397	1/1:106:0,106:0:0:106:3761:-337.883,-31.9092,0	1/1:266:0,266:0:0:266:9463:-849.806,-80.074,0	1/1:225:0,225:0:0:225:8039:-721.951,-67.7318,0	1/1:36:0,36:0:0:36:1283:-115.626,-10.8371,0	1/1:247:0,246:0:0:246:8794:-790.314,-74.0534,0	1/1:189:0,189:0:0:189:6761:-607.36,-56.8947,0	0/1:187:93,94:93:3344:94:3352:-245.293,0,-244.191	1/1:11:0,11:0:0:11:388:-35.1767,-3.31133,0	1/1:22:0,22:0:0:22:780:-70.4553,-6.62266,0	1/1:8:0,8:0:0:8:279:-25.403,-2.40824,0	1/1:11:0,11:0:0:11:396:-35.9142,-3.31133,0	0/1:21:9,12:9:324:12:429:-32.2388,0,-22.9751	1/1:152:0,152:0:0:152:5432:-488.129,-45.7566,0	0/1:164:94,70:94:3367:70:2494:-174.686,0,-253.452	0/1:36:21,15:21:748:15:536:-37.6483,0,-56.6907	1/1:3:0,3:0:0:3:108:-10.0619,-0.90309,0	1/1:109:0,109:0:0:109:3849:-346.033,-32.8123,0	1/1:26:0,26:0:0:26:923:-83.1874,-7.82678,0	1/1:222:0,221:0:0:221:7907:-709.876,-66.5276,0	1/1:46:0,45:0:0:45:1611:-144.758,-13.5464,0	0/1:41:30,11:30:1072:11:392:-23.218,0,-84.3059	1/1:124:0,124:0:0:124:4438:-398.416,-37.3277,0	0/1:154:70,84:70:2504:84:2973:-219.876,0,-178.464	1/1:152:0,152:0:0:152:5423:-487.396,-45.7566,0	1/1:124:0,124:0:0:124:4432:-398.747,-37.3277,0	1/1:80:0,80:0:0:80:2847:-256.297,-24.0824,0	1/1:144:0,144:0:0:144:5164:-464.445,-43.3483,0	1/1:8:0,8:0:0:8:288:-26.2549,-2.40824,0	1/1:86:0,86:0:0:86:3092:-277.577,-25.8886,0	1/1:65:0,65:0:0:65:2307:-207.588,-19.567,0	1/1:27:0,27:0:0:27:955:-86.0422,-8.12781,0	0/1:149:55,94:55:1964:94:3344:-256.011,0,-131.108	0/1:61:48,13:48:1708:13:459:-23.2622,0,-135.439	0/1:15:6,9:6:216:9:320:-24.607,0,-15.2547	1/1:24:0,24:0:0:24:856:-77.0908,-7.22472,0	1/1:123:0,123:0:0:123:4399:-395.239,-37.0267,0	0/1:111:53,58:53:1888:58:2084:-154.105,0,-135.949	1/1:4:0,4:0:0:4:140:-12.9392,-1.20412,0	1/1:169:0,169:0:0:169:6021:-540.892,-50.8741,0	1/1:141:0,141:0:0:141:5017:-451.294,-42.4452,0	1/1:32:2,30:2:72:30:1076:-90.1162,-2.80328,0	1/1:76:0,76:0:0:76:2723:-244.96,-22.8783,0	0/1:164:70,94:70:2512:94:3353:-251.916,0,-176.27	1/1:144:0,144:0:0:144:5153:-463.105,-43.3483,0	1/1:28:0,28:0:0:28:970:-87.1528,-8.42884,0	1/1:83:0,83:0:0:83:2961:-266.076,-24.9855,0	0/1:37:10,27:10:360:27:960:-75.4877,0,-21.5725	1/1:27:0,27:0:0:27:968:-87.3958,-8.12781,0	1/1:226:0,226:0:0:226:8036:-720.241,-68.0328,0	0/1:117:61,56:61:2188:56:2005:-145.143,0,-161.367	1/1:147:0,147:0:0:147:5259:-472.179,-44.2514,0	1/1:207:0,207:0:0:207:7420:-667.237,-62.3132,0	1/1:126:0,126:0:0:126:4503:-403.927,-37.9298,0	1/1:78:0,78:0:0:78:2791:-250.638,-23.4803,0	1/1:16:0,16:0:0:16:572:-51.4271,-4.81648,0	1/1:108:0,108:0:0:108:3856:-346.295,-32.5112,0	0/1:92:43,49:43:1548:49:1756:-130.033,0,-111.652	0/1:189:124,65:124:4439:65:2321:-151.839,0,-342.013	1/1:36:0,36:0:0:36:1280:-115.405,-10.8371,0	1/1:61:0,60:0:0:60:2152:-193.299,-18.0618,0	0/1:31:17,14:17:612:14:496:-35.6225,0,-45.8783	0/1:125:74,51:74:2634:51:1820:-126.291,0,-199.067	0/1:17:8,9:8:288:9:320:-23.9745,0,-20.449	1/1:52:0,52:0:0:52:1857:-166.37,-15.6536,0	1/1:56:0,56:0:0:56:1999:-179.143,-16.8577,0	1/1:21:0,21:0:0:21:744:-66.9142,-6.32163,0	0/1:113:68,45:68:2424:45:1612:-110.901,0,-183.835	0/1:57:45,12:45:1616:12:432:-22.0277,0,-127.876	1/1:125:0,125:0:0:125:4446:-399.409,-37.6288,0	1/1:84:1,83:1:36:83:2975:-264.05,-21.6933,0
chr02	2275706	.	TGC	TGT,AGT	188731	PASS	AB=0.468542,0.529504;ABP=25.0059,22.3584;AC=161,27;AF=0.856383,0.143617;AN=188;AO=7262,1360;CIGAR=2M1X,1X1M1X;DP=8637;DPB=8637.33;DPRA=0,1.10434;EPP=15772.2,2956.21;EPPR=16.0391;GTI=0;LEN=1,3;MEANALT=1.41489,2.1;MQM=54.7185,53.4066;MQMR=60;NS=94;NUMALT=2;ODDS=0.887149;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=258193,48050;QR=216;RO=6;RPL=7262,1360;RPP=15772.2,2956.21;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=0,0;SAP=15772.2,2956.21;SAR=7262,1360;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:83:0,82,0:0:0:82,0:2948,0:-263.504,-24.6845,0,-263.504,-24.6845,-263.504	1/1:73:0,73,0:0:0:73,0:2532,0:-226.024,-21.9752,0,-226.024,-21.9752,-226.024	1/1:125:0,125,0:0:0:125,0:4439,0:-397.752,-37.6288,0,-397.752,-37.6288,-397.752	1/2:196:0,83,113:0:0:83,113:2930,3960:-559.235,-320.968,-295.982,-238.618,0,-204.602	1/1:100:0,100,0:0:0:100,0:3540,0:-318.029,-30.103,0,-318.029,-30.103,-318.029	1/1:68:0,68,0:0:0:68,0:2440,0:-219.336,-20.47,0,-219.336,-20.47,-219.336	1/1:61:0,61,0:0:0:61,0:2181,0:-196.391,-18.3628,0,-196.391,-18.3628,-196.391	1/1:137:0,137,0:0:0:137,0:4924,0:-441.406,-41.2411,0,-441.406,-41.2411,-441.406	1/1:108:1,107,0:1:36:107,0:3825,0:-339.463,-28.913,0,-339.764,-32.2102,-342.701	1/1:62:0,62,0:0:0:62,0:2194,0:-197.54,-18.6639,0,-197.54,-18.6639,-197.54	1/1:37:0,37,0:0:0:37,0:1328,0:-119.653,-11.1381,0,-119.653,-11.1381,-119.653	1/1:76:0,76,0:0:0:76,0:2732,0:-245.324,-22.8783,0,-245.324,-22.8783,-245.324	1/1:47:0,47,0:0:0:47,0:1677,0:-150.735,-14.1484,0,-150.735,-14.1484,-150.735	1/2:57:0,33,24:0:0:33,24:1169,857:-165.044,-69.9755,-60.0415,-95.4232,0,-88.1985	1/1:59:0,59,0:0:0:59,0:2097,0:-188.813,-17.7608,0,-188.813,-17.7608,-188.813	1/2:47:0,20,27:0:0:20,27:720,962:-137.148,-78.5845,-72.5639,-58.9209,0,-50.7931	1/1:26:0,26,0:0:0:26,0:921,0:-82.4397,-7.82678,0,-82.4397,-7.82678,-82.4397	1/2:33:1,13,19:1:36:13,19:453,681:-88.7276,-52.2684,-51.2926,-33.8141,0,-31.0329	1/1:20:0,20,0:0:0:20,0:697,0:-62.924,-6.0206,0,-62.924,-6.0206,-62.924	1/2:100:0,50,50:0:0:50,50:1775,1771:-288.611,-144.404,-129.353,-144.56,0,-129.509	1/2:145:0,75,70:0:0:75,70:2673,2480:-418.937,-201.523,-178.946,-217.768,0,-196.696	1/1:137:0,137,0:0:0:137,0:4826,0:-434.174,-41.2411,0,-434.174,-41.2411,-434.174	1/1:139:0,139,0:0:0:139,0:4970,0:-446.913,-41.8432,0,-446.913,-41.8432,-446.913	1/2:84:0,46,38:0:0:46,38:1633,1340:-241.669,-109.21,-95.3625,-132.812,0,-121.373	1/1:107:0,107,0:0:0:107,0:3825,0:-342.912,-32.2102,0,-342.912,-32.2102,-342.912	1/1:272:0,270,1:0:0:270,1:9554,36:-857.173,-81.2781,0,-854.321,-78.3899,-854.02	1/1:227:0,227,0:0:0:227,0:8042,0:-722.251,-68.3338,0,-722.251,-68.3338,-722.251	1/1:34:0,34,0:0:0:34,0:1179,0:-106.276,-10.235,0,-106.276,-10.235,-106.276	1/1:248:0,248,0:0:0:248,0:8848,0:-794.992,-74.6554,0,-794.992,-74.6554,-794.992	1/1:189:0,188,0:0:0:188,0:6711,0:-602.25,-56.5936,0,-602.25,-56.5936,-602.25	1/2:187:0,93,94:0:0:93,94:3253,3293:-531.747,-267.368,-239.372,-264.37,0,-236.073	1/1:12:0,12,0:0:0:12,0:428,0:-38.7141,-3.61236,0,-38.7141,-3.61236,-38.7141	1/1:24:0,24,0:0:0:24,0:845,0:-76.2919,-7.22472,0,-76.2919,-7.22472,-76.2919	1/1:7:0,7,0:0:0:7,0:252,0:-22.9851,-2.10721,0,-22.9851,-2.10721,-22.9851	1/1:11:0,11,0:0:0:11,0:388,0:-35.1963,-3.31133,0,-35.1963,-3.31133,-35.1963	1/2:21:0,12,9:0:0:12,9:417,324:-60.3844,-26.5875,-22.9751,-34.1495,0,-31.4402	1/1:154:1,153,0:1:36:153,0:5424,0:-483.637,-42.7603,0,-483.938,-46.0576,-486.876	1/2:171:0,72,99:0:0:72,99:2535,3503:-491.292,-285.251,-263.577,-206.394,0,-176.592	1/2:36:0,15,21:0:0:15,21:540,741:-104.551,-60.5789,-56.0634,-44.3279,0,-38.0063	1/1:3:0,3,0:0:0:3,0:108,0:-10.0619,-0.90309,0,-10.0619,-0.90309,-10.0619	1/1:112:0,111,0:0:0:111,0:3972,0:-356.668,-33.4143,0,-356.668,-33.4143,-356.668	1/1:27:0,27,0:0:0:27,0:964,0:-86.8732,-8.12781,0,-86.8732,-8.12781,-86.8732	1/1:226:0,226,0:0:0:226,0:8029,0:-721.205,-68.0328,0,-721.205,-68.0328,-721.205	1/1:45:0,45,0:0:0:45,0:1616,0:-145.568,-13.5464,0,-145.568,-13.5464,-145.568	1/2:41:0,11,30:0:0:11,30:396,1052:-118.081,-85.8267,-82.5154,-32.6106,0,-23.5797	1/1:125:0,124,0:0:0:124,0:4422,0:-397.311,-37.3277,0,-397.311,-37.3277,-397.311	1/2:153:0,83,70:0:0:83,70:2962,2456:-439.354,-199.381,-174.396,-240.325,0,-219.253	1/1:153:0,153,0:0:0:153,0:5451,0:-488.895,-46.0576,0,-488.895,-46.0576,-488.895	1/1:124:0,124,0:0:0:124,0:4426,0:-398.248,-37.3277,0,-398.248,-37.3277,-398.248	1/1:79:0,79,0:0:0:79,0:2810,0:-252.968,-23.7814,0,-252.968,-23.7814,-252.968	1/1:145:0,145,0:0:0:145,0:5170,0:-465.11,-43.6494,0,-465.11,-43.6494,-465.11	1/1:8:0,8,0:0:0:8,0:273,0:-24.8892,-2.40824,0,-24.8892,-2.40824,-24.8892	1/1:86:0,86,0:0:0:86,0:3081,0:-276.405,-25.8886,0,-276.405,-25.8886,-276.405	1/1:65:0,65,0:0:0:65,0:2294,0:-206.003,-19.567,0,-206.003,-19.567,-206.003	1/1:27:0,27,0:0:0:27,0:968,0:-87.1222,-8.12781,0,-87.1222,-8.12781,-87.1222	1/2:150:0,94,56:0:0:94,56:3357,1996:-435.454,-162.444,-134.147,-273.365,0,-256.508	1/2:62:0,13,49:0:0:13,49:468,1745:-180.54,-142.375,-138.461,-38.5243,0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chr02	2316854	.	T	C	137804	PASS	AB=0.496183;ABP=3.27552;AC=160;AF=0.851064;AN=188;AO=6315;CIGAR=1X;DP=7388;DPB=7388;DPRA=0;EPP=13715.9;EPPR=2313.46;GTI=1;LEN=1;MEANALT=1.09574;MQM=59.4076;MQMR=59.9352;NS=94;NUMALT=1;ODDS=6.30109;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224082;QR=38072;RO=1064;RPL=6315;RPP=13715.9;RPPR=2313.46;RPR=0;RUN=1;SAF=6315;SAP=13715.9;SAR=0;SRF=1064;SRP=2313.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:356:-32.3635,-3.0103,0	1/1:55:0,55:0:0:55:1948:-175.576,-16.5567,0	1/1:180:0,180:0:0:180:6410:-576.674,-54.1854,0	0/1:224:113,111:113:4052:111:3959:-289.021,0,-297.436	1/1:41:0,41:0:0:41:1448:-130.256,-12.3422,0	1/1:10:0,10:0:0:10:356:-32.3635,-3.0103,0	1/1:92:0,92:0:0:92:3278:-294.802,-27.6948,0	1/1:160:0,159:0:0:159:5634:-506.128,-47.8638,0	1/1:45:0,45:0:0:45:1604:-144.596,-13.5464,0	1/1:64:0,64:0:0:64:2296:-206.884,-19.2659,0	1/1:69:0,69:0:0:69:2447:-220.277,-20.7711,0	1/1:76:0,76:0:0:76:2704:-243.574,-22.8783,0	1/1:58:0,58:0:0:58:2031:-182.956,-17.4597,0	0/1:66:32,34:32:1143:34:1220:-90.2113,0,-83.3107	1/1:36:0,36:0:0:36:1292:-116.54,-10.8371,0	0/1:55:33,22:33:1188:22:775:-53.5145,0,-90.6719	1/1:29:0,29:0:0:29:1008:-91.0142,-8.72987,0	0/1:18:4,14:4:144:14:487:-38.7407,0,-7.89508	1/1:14:0,14:0:0:14:494:-44.7885,-4.21442,0	0/1:207:103,104:103:3680:104:3697:-270.588,0,-269.091	0/1:98:58,40:58:2084:40:1398:-96.5868,0,-158.329	1/1:120:0,120:0:0:120:4274:-384.768,-36.1236,0	1/1:94:1,92:1:36:92:3241:-288.199,-24.7573,0	0/1:23:16,7:16:576:7:248:-15.7405,0,-45.2513	1/1:68:0,68:0:0:68:2383:-214.705,-20.47,0	1/1:222:0,222:0:0:222:7867:-707.758,-66.8287,0	1/1:183:0,183:0:0:183:6506:-585.424,-55.0885,0	1/1:21:0,21:0:0:21:725:-65.4528,-6.32163,0	1/1:221:1,219:1:36:219:7775:-694.973,-62.9882,0	1/1:110:0,109:0:0:109:3842:-345.639,-32.8123,0	0/1:66:33,33:33:1152:33:1169:-85.6465,0,-84.1154	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:39:0,39:0:0:39:1396:-125.932,-11.7402,0	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	1/1:130:0,130:0:0:130:4609:-414.895,-39.1339,0	0/1:116:65,51:65:2336:51:1832:-130.224,0,-175.262	0/1:31:18,13:18:644:13:464:-32.7067,0,-48.9587	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:98:0,98:0:0:98:3463:-311.065,-29.5009,0	1/1:25:0,25:0:0:25:880:-79.5039,-7.52575,0	1/1:117:0,117:0:0:117:4139:-372.584,-35.2205,0	1/1:37:0,37:0:0:37:1332:-120.153,-11.1381,0	0/1:40:27,13:27:956:13:447:-28.5027,0,-74.3113	1/1:117:0,117:0:0:117:4146:-373.215,-35.2205,0	0/1:60:38,22:38:1364:22:792:-53.5439,0,-104.999	1/1:88:0,88:0:0:88:3095:-278.672,-26.4906,0	1/1:83:0,83:0:0:83:2958:-266.219,-24.9855,0	1/1:135:0,135:0:0:135:4783:-430.54,-40.6391,0	1/1:147:0,147:0:0:147:5194:-467.332,-44.2514,0	1/1:15:0,15:0:0:15:540:-48.9227,-4.51545,0	1/1:202:0,202:0:0:202:7206:-648.185,-60.8081,0	1/1:68:0,67:0:0:67:2395:-215.427,-20.169,0	1/1:12:0,12:0:0:12:419:-38.0345,-3.61236,0	0/1:137:72,65:72:2579:65:2281:-164.269,0,-191.114	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:26:0,26:0:0:26:914:-82.5747,-7.82678,0	1/1:77:0,76:0:0:76:2693:-242.223,-22.8783,0	0/1:100:58,42:58:2088:42:1487:-103.993,0,-158.087	1/1:11:0,11:0:0:11:383:-34.7617,-3.31133,0	1/1:118:0,118:0:0:118:4222:-380.06,-35.5215,0	1/1:141:0,141:0:0:141:5036:-452.22,-42.4452,0	0/1:83:8,75:8:288:75:2655:-214.028,0,-1.28192	1/1:94:0,94:0:0:94:3330:-299.864,-28.2968,0	0/1:117:60,57:60:2152:57:2023:-147.077,0,-158.727	1/1:245:4,241:4:144:241:8560:-756.962,-60.4387,0	1/1:34:0,33:0:0:33:1162:-104.515,-9.93399,0	1/1:60:1,58:1:36:58:2070:-182.945,-14.5223,0	0/1:43:21,22:21:748:22:792:-58.661,0,-54.701	1/1:28:0,28:0:0:28:932:-84.1228,-8.42884,0	1/1:124:0,124:0:0:124:4383:-394.285,-37.3277,0	0/1:28:18,10:18:648:10:351:-23.4978,0,-50.223	1/1:97:0,97:0:0:97:3463:-311.824,-29.1999,0	1/1:110:0,110:0:0:110:3922:-353.042,-33.1133,0	1/1:162:0,162:0:0:162:5750:-517.539,-48.7669,0	1/1:77:1,76:1:36:76:2707:-240.259,-19.581,0	1/1:18:0,18:0:0:18:639:-57.7721,-5.41854,0	1/1:92:0,92:0:0:92:3269:-294.414,-27.6948,0	0/1:103:41,62:41:1476:62:2191:-166.421,0,-102.13	0/1:144:79,65:79:2840:65:2319:-165.607,0,-212.476	1/1:60:0,60:0:0:60:2140:-192.745,-18.0618,0	1/1:46:0,46:0:0:46:1648:-148.566,-13.8474,0	0/1:23:8,15:8:288:15:532:-41.2894,0,-19.3437	0/1:89:44,45:44:1552:45:1611:-118.474,0,-113.177	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:51:0,51:0:0:51:1782:-160.595,-15.3525,0	1/1:57:0,57:0:0:57:2040:-183.817,-17.1587,0	1/1:39:0,39:0:0:39:1380:-124.366,-11.7402,0	0/1:143:61,81:61:2163:81:2868:-215.13,0,-151.827	0/1:39:21,18:21:743:18:648:-46.6407,0,-55.4532	1/1:123:0,123:0:0:123:4370:-393.367,-37.0267,0	1/1:65:1,64:1:36:64:2255:-199.595,-15.9687,0
chr02	2320371	.	G	A	119855	PASS	AB=0.467825;ABP=16.9837;AC=161;AF=0.856383;AN=188;AO=5325;CIGAR=1X;DP=6155;DPB=6155;DPRA=0;EPP=11187.1;EPPR=1794.49;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9579;MQMR=59.9759;NS=94;NUMALT=1;ODDS=7.36391;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189709;QR=29246;RO=829;RPL=5281;RPP=11187.1;RPPR=1794.49;RPR=44;RUN=1;SAF=0;SAP=11566.1;SAR=5325;SRF=0;SRP=1803.16;SRR=829;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1495:-134.843,-12.6433,0	1/1:72:0,72:0:0:72:2571:-231.639,-21.6742,0	1/1:188:0,188:0:0:188:6707:-603.708,-56.5936,0	0/1:77:36,41:36:1280:41:1455:-108.065,0,-92.3239	1/1:65:0,65:0:0:65:2325:-209.509,-19.567,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:73:0,73:0:0:73:2587:-233.078,-21.9752,0	1/1:130:0,130:0:0:130:4594:-413.611,-39.1339,0	1/1:86:0,86:0:0:86:3051:-274.82,-25.8886,0	1/1:45:0,45:0:0:45:1593:-143.659,-13.5464,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:38:0,38:0:0:38:1330:-119.996,-11.4391,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:27:18,9:18:631:9:324:-21.378,0,-48.9879	1/1:27:0,27:0:0:27:956:-86.3498,-8.12781,0	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:168:88,80:88:3122:80:2826:-203.995,0,-230.634	0/1:91:49,42:49:1743:42:1484:-106.459,0,-129.741	1/1:138:0,138:0:0:138:4917:-442.624,-41.5421,0	1/1:76:0,76:0:0:76:2705:-243.694,-22.8783,0	0/1:95:54,41:54:1872:41:1457:-102.826,0,-140.159	1/1:84:0,84:0:0:84:2997:-269.959,-25.2865,0	1/1:245:0,245:0:0:245:8733:-785.625,-73.7524,0	1/1:147:0,147:0:0:147:5193:-467.506,-44.2514,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:177:0,177:0:0:177:6308:-567.806,-53.2823,0	1/1:106:0,106:0:0:106:3776:-340.038,-31.9092,0	0/1:72:31,41:31:1095:41:1472:-111.102,0,-77.1849	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:379:-34.44,-3.31133,0	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	1/1:93:0,93:0:0:93:3311:-298.209,-27.9958,0	0/1:152:77,75:77:2714:75:2645:-192.539,0,-198.748	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:66:1,65:1:36:65:2319:-205.371,-16.2697,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:143:0,143:0:0:143:5053:-454.917,-43.0473,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:26:11,15:11:388:15:540:-41.1098,0,-27.4306	1/1:105:0,105:0:0:105:3750:-337.699,-31.6082,0	0/1:82:46,36:46:1626:36:1240:-87.2118,0,-121.943	1/1:101:0,101:0:0:101:3593:-323.53,-30.404,0	1/1:125:0,125:0:0:125:4453:-400.941,-37.6288,0	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:179:0,179:0:0:179:6387:-574.919,-53.8844,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:177:0,177:0:0:177:6352:-571.769,-53.2823,0	1/1:35:0,35:0:0:35:1237:-111.633,-10.5361,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:76:52,24:52:1828:24:850:-53.9415,0,-141.923	0/1:41:23,18:23:798:18:648:-46.3097,0,-59.7944	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:69:0,69:0:0:69:2456:-221.291,-20.7711,0	0/1:56:36,20:36:1283:20:716:-47.91,0,-98.9149	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:93:0,93:0:0:93:3328:-299.736,-27.9958,0	1/1:213:0,213:0:0:213:7558:-680.261,-64.1194,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:37:0,37:0:0:37:1313:-118.467,-11.1381,0	0/1:84:51,33:51:1785:33:1176:-80.8612,0,-135.644	1/1:93:0,93:0:0:93:3333:-300.185,-27.9958,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:51:0,51:0:0:51:1818:-163.9,-15.3525,0	0/1:56:30,26:30:1064:26:921:-66.3484,0,-79.214	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:118:0,118:0:0:118:4218:-379.799,-35.5215,0	0/1:33:19,13:19:680:13:468:-32.4669,0,-51.5365	1/1:125:0,125:0:0:125:4456:-401.211,-37.6288,0	1/1:107:0,107:0:0:107:3815:-343.548,-32.2102,0	1/1:122:1,121:1:27:121:4307:-385.109,-34.0259,0	1/1:51:0,51:0:0:51:1825:-164.531,-15.3525,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:67:0,67:0:0:67:2394:-215.717,-20.169,0	0/1:80:39,41:39:1366:41:1460:-107.614,0,-99.1545	0/1:104:45,59:45:1600:59:2107:-158.591,0,-112.983	1/1:74:0,74:0:0:74:2649:-238.655,-22.2762,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:27:11,16:11:372:16:576:-44.0472,0,-25.676	0/1:63:27,36:27:944:36:1292:-97.6189,0,-66.3065	0/1:22:8,14:8:276:14:500:-38.7135,0,-18.5526	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:35:1,34:1:36:34:1212:-105.788,-6.93778,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:23:14,9:14:492:9:324:-22.5822,0,-37.6887	0/1:35:25,10:25:896:10:360:-22.2083,0,-70.4243	1/1:78:0,78:0:0:78:2785:-250.891,-23.4803,0	1/1:27:0,27:0:0:27:957:-86.4447,-8.12781,0
chr02	2320543	.	A	G	18432.3	PASS	AB=0.526818;ABP=16.7537;AC=27;AF=0.143617;AN=188;AO=1175;CIGAR=1X;DP=6821;DPB=6821;DPRA=1.52392;EPP=2554.49;EPPR=12247.9;GTI=2;LEN=1;MEANALT=1.05405;MQM=42.3404;MQMR=56.6151;NS=94;NUMALT=1;ODDS=1.18137;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41664;QR=202072;RO=5643;RPL=0;RPP=2554.49;RPPR=12247.9;RPR=1175;RUN=1;SAF=0;SAP=2554.49;SAR=1175;SRF=0;SRP=12256.6;SRR=5643;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1400:0:0:0,-11.7402,-125.948	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.83	0/0:336:333,3:333:11948:3:108:0,-91.8643,-1062.72	0/1:206:80,125:80:2846:125:4424:-324.564,0,-194.096	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.7977	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.0722	0/0:54:52,2:52:1872:2:72:0,-9.60049,-161.985	0/0:68:67,1:67:2400:1:36:0,-16.949,-212.608	0/0:135:135,0:135:4844:0:0:0,-40.639,-435.761	0/0:76:76,0:76:2732:0:0:0,-22.8783,-245.779	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4298	0/0:71:71,0:71:2524:0:0:0,-21.3731,-227.15	0/0:58:57,1:57:2044:1:36:0,-13.9387,-180.259	0/1:19:9,10:9:309:10:352:-25.677,0,-22.4086	0/0:59:59,0:59:2120:0:0:0,-17.7608,-190.713	0/1:39:25,14:25:896:14:504:-33.0421,0,-69.1843	0/0:20:19,1:19:680:1:36:0,-2.49959,-57.9914	0/1:17:12,5:12:432:5:180:-10.9703,0,-34.0161	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.865	0/1:129:79,50:79:2832:50:1767:-116.251,0,-215.818	0/1:188:111,77:111:3973:77:2748:-184.481,0,-300.776	0/0:115:115,0:115:4121:0:0:0,-34.6184,-370.772	0/0:113:112,1:112:4011:1:36:0,-30.5137,-357.022	0/1:42:23,19:23:820:19:680:-47.4767,0,-61.027	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.644	0/0:257:257,0:257:9187:0:0:0,-77.3647,-825.637	0/0:242:240,2:240:8623:2:68:0,-66.4724,-768.179	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.0497	0/0:229:229,0:229:8196:0:0:0,-68.9359,-737.048	0/0:80:80,0:80:2853:0:0:0,-24.0824,-255.82	0/1:96:40,56:40:1436:56:1993:-145.127,0,-100.237	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7858	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.6904	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0729	0/1:11:3,8:3:108:8:288:-22.4196,0,-6.75598	0/0:150:150,0:150:5380:0:0:0,-45.1545,-483.807	0/1:162:58,104:58:2073:104:3699:-275.208,0,-137.714	0/1:21:11,10:11:392:10:360:-25.4511,0,-29.2891	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.245	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.6712	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.191	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.9626	0/1:39:29,10:29:1036:10:351:-19.474,0,-81.7477	0/0:103:103,0:103:3685:0:0:0,-31.0061,-331.608	0/1:133:52,81:52:1868:81:2867:-212.223,0,-128.253	0/0:116:116,0:116:4122:0:0:0,-34.9195,-370.359	0/0:62:62,0:62:2198:0:0:0,-18.6639,-197.948	0/0:58:58,0:58:2050:0:0:0,-17.4597,-184.618	0/0:110:110,0:110:3941:0:0:0,-33.1133,-354.28	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0679	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.373	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.19	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5484	0/1:85:44,40:44:1575:40:1411:-99.1404,0,-116.407	0/1:55:22,33:22:792:33:1151:-84.6749,0,-54.9997	0/1:4:1,3:1:36:3:108:-8.69702,0,-2.39315	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0724	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.223	0/1:70:45,25:45:1612:25:900:-57.405,0,-123.977	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.304	0/0:114:114,0:114:4073:0:0:0,-34.3174,-366.497	0/0:119:119,0:119:4261:0:0:0,-35.8226,-383.185	0/0:71:68,3:68:2429:3:108:0,-11.5143,-208.628	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.542	0/1:142:59,83:59:2116:83:2928:-213.519,0,-147.602	0/0:186:185,1:185:6636:1:36:0,-52.4706,-593.285	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.0604	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.623	0/1:26:15,11:15:540:11:387:-26.3287,0,-41.0912	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.534	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.316	0/1:95:55,40:55:1964:40:1416:-96.3435,0,-146.999	0/0:91:90,0:90:3236:0:0:0,-27.0927,-290.904	0/0:81:81,0:81:2900:0:0:0,-24.3834,-260.89	0/0:71:71,0:71:2556:0:0:0,-21.3731,-229.995	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.142	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3726	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.055	0/1:145:61,84:61:2158:84:2976:-218.497,0,-150.715	0/1:226:75,151:75:2688:151:5316:-395.731,0,-173.968	0/0:44:43,1:43:1548:1:36:0,-9.74262,-135.842	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.129	0/1:29:16,13:16:576:13:459:-30.9836,0,-43.3232	0/1:111:64,47:64:2292:47:1683:-113.823,0,-172.708	0/1:16:12,4:12:432:4:144:-8.21125,0,-34.3938	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.896	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.173	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.6958	0/1:50:23,27:23:824:27:972:-70.94,0,-58.907	0/1:44:15,29:15:536:29:1028:-76.2635,0,-35.2941	0/0:100:100,0:100:3592:0:0:0,-30.103,-322.906	0/0:80:80,0:80:2876:0:0:0,-24.0824,-258.788
chr02	2369077	.	A	G	81780	PASS	AB=0.493706;ABP=5.52526;AC=30;AF=0.159574;AN=188;AO=3641;CIGAR=1X;DP=22253;DPB=22253;DPRA=1.25556;EPP=7909.34;EPPR=40388.1;GTI=0;LEN=1;MEANALT=1.03922;MQM=59.9885;MQMR=59.9932;NS=94;NUMALT=1;ODDS=6.75626;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129214;QR=659839;RO=18606;RPL=1953;RPP=44.8921;RPPR=3.19703;RPR=1688;RUN=1;SAF=1953;SAP=44.8921;SAR=1688;SRF=9281;SRP=3.23625;SRR=9325;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:95:95,0:95:3371:0:0:0,-28.5978,-303.608	0/0:318:316,1:316:11263:1:36:0,-92.1881,-1009.96	0/0:280:280,0:280:9966:0:0:0,-84.2884,-896.516	0/1:360:186,174:186:6584:174:6177:-447.66,0,-484.277	0/1:157:70,87:70:2503:87:3075:-229.716,0,-178.26	0/1:140:78,62:78:2768:62:2220:-157.92,0,-207.219	0/0:353:352,1:352:12459:1:36:0,-102.665,-1117.56	0/0:241:240,1:240:8503:1:36:0,-68.95,-761.682	0/0:284:284,0:284:10143:0:0:0,-85.4925,-912.804	0/0:261:261,0:261:9281:0:0:0,-78.5688,-835.262	0/0:172:172,0:172:6100:0:0:0,-51.7772,-549.103	0/0:198:198,0:198:7004:0:0:0,-59.6039,-630.43	0/0:254:254,0:254:9002:0:0:0,-76.4616,-810.169	0/1:240:118,122:118:4185:122:4288:-313.853,0,-304.587	0/0:211:211,0:211:7461:0:0:0,-63.5173,-671.542	0/1:204:107,95:107:3827:95:3353:-239.881,0,-283.459	0/0:199:199,0:199:7098:0:0:0,-59.905,-638.881	0/1:183:94,89:94:3352:89:3159:-229.448,0,-246.809	0/0:130:130,0:130:4643:0:0:0,-39.1339,-418.033	0/1:485:251,234:251:8930:234:8320:-602.811,0,-657.56	0/1:322:166,156:166:5902:156:5486:-396.942,0,-434.362	0/0:165:165,0:165:5882:0:0:0,-49.6699,-529.492	0/0:243:240,3:240:8500:3:108:0,-63.0751,-754.804	0/1:244:121,123:121:4303:123:4328:-316.247,0,-313.995	0/0:214:214,0:214:7511:0:0:0,-64.4204,-676.044	0/0:615:614,0:614:21766:0:0:0,-184.832,-1958.11	0/0:474:474,0:474:16824:0:0:0,-142.688,-1513.83	0/0:109:108,1:108:3811:1:36:0,-29.214,-339.591	0/0:508:507,1:507:17976:1:36:0,-149.325,-1613.86	0/0:282:282,0:282:10044:0:0:0,-84.8905,-903.9	0/1:208:98,110:98:3460:110:3875:-286.332,0,-249	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/1:35:24,11:24:860:11:396:-25.4467,0,-67.1858	0/0:598:596,2:596:21142:2:72:0,-173.179,-1895.43	0/1:279:145,134:145:5111:134:4762:-344.75,0,-376.149	0/1:209:96,113:96:3410:113:4032:-300.154,0,-244.2	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:315:314,1:314:11196:1:36:0,-91.2262,-1003.56	0/0:137:136,1:136:4820:1:36:0,-37.6428,-430.36	0/0:303:303,0:303:10730:0:0:0,-91.2121,-965.618	0/0:218:217,1:217:7709:1:32:0,-62.4252,-690.651	0/1:152:85,67:85:3030:67:2363:-167.17,0,-227.173	0/0:283:282,1:282:9941:1:36:0,-81.5932,-891.043	0/1:285:130,155:130:4648:155:5461:-405.825,0,-332.689	0/0:329:325,4:325:11512:4:144:0,-85.7252,-1022.65	0/0:343:342,0:342:12097:0:0:0,-102.952,-1088.38	0/0:281:280,1:280:9897:1:36:0,-80.9912,-887.078	0/0:330:329,1:329:11595:1:36:0,-95.7416,-1039.84	0/1:20:12,8:12:415:8:275:-19.0629,0,-31.6597	0/0:312:312,0:312:11119:0:0:0,-93.9214,-1000.61	0/0:106:106,0:106:3775:0:0:0,-31.9092,-339.95	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/1:329:171,158:171:6031:158:5598:-404.906,0,-443.861	0/1:209:111,98:111:3910:98:3472:-249.777,0,-289.18	0/1:28:19,9:19:675:9:324:-21.077,0,-52.6481	0/0:328:328,0:328:11642:0:0:0,-98.7378,-1047.65	0/0:213:213,0:213:7529:0:0:0,-64.1194,-677.66	0/1:276:159,117:159:5669:117:4164:-291.858,0,-427.246	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:385:384,0:384:13643:0:0:0,-115.596,-1227.41	0/0:419:418,1:418:14756:1:36:0,-122.533,-1324.2	0/0:137:132,5:132:4666:5:180:0,-24.689,-403.552	0/0:203:203,0:203:7204:0:0:0,-61.1091,-648.421	0/1:338:187,151:187:6614:151:5364:-381.147,0,-493.596	0/0:230:230,0:230:8202:0:0:0,-69.2369,-738.196	0/0:65:65,0:65:2298:0:0:0,-19.5669,-207.081	0/0:180:180,0:180:6380:0:0:0,-54.1854,-574.295	0/1:223:117,106:117:4174:106:3786:-273.808,0,-308.713	0/0:29:29,0:29:1017:0:0:0,-8.72987,-91.8398	0/0:266:265,1:265:9405:1:36:0,-76.4757,-842.822	0/1:169:72,97:72:2580:97:3468:-261.458,0,-181.575	0/0:400:400,0:400:14139:0:0:0,-120.412,-1272.29	0/0:323:323,0:323:11414:0:0:0,-97.2327,-1027.15	0/0:202:201,1:201:7166:1:36:0,-57.2098,-641.398	0/0:233:230,3:230:8161:3:108:0,-60.0648,-724.438	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:216:215,1:215:7595:1:36:0,-61.4242,-679.998	0/1:218:110,108:110:3924:108:3851:-281.162,0,-287.73	0/1:567:305,262:305:10792:262:9344:-670.243,0,-800.511	0/0:294:294,0:294:10419:0:0:0,-88.5028,-937.643	0/0:215:215,0:215:7614:0:0:0,-64.7214,-685.305	0/1:285:138,147:138:4863:147:5208:-383.068,0,-352.035	0/1:431:211,220:211:7496:220:7814:-573.551,0,-544.944	0/1:137:77,60:77:2723:60:2123:-150.097,0,-204.074	0/0:269:268,1:268:9498:1:36:0,-77.3788,-851.191	0/0:241:241,0:241:8591:0:0:0,-72.5482,-773.191	0/0:141:141,0:141:4979:0:0:0,-42.4452,-448.263	0/1:251:121,130:121:4265:130:4628:-341.128,0,-308.472	0/1:324:119,205:119:4228:205:7316:-560.957,0,-283.17	0/0:325:325,0:325:11451:0:0:0,-97.8347,-1030.48	0/0:294:294,0:294:10434:0:0:0,-88.5028,-938.989
chr02	2395398	.	G	A	5992.89	PASS	AB=0.382012;ABP=138.8;AC=28;AF=0.153846;AN=182;AO=430;CIGAR=1X;DP=4197;DPB=4197;DPRA=0.828316;EPP=936.743;EPPR=8163.41;GTI=4;LEN=1;MEANALT=1.06897;MQM=59.7488;MQMR=59.9931;NS=91;NUMALT=1;ODDS=0.0742643;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15301;QR=134196;RO=3762;RPL=0;RPP=936.743;RPPR=8163.41;RPR=430;RUN=1;SAF=0;SAP=936.743;SAR=430;SRF=0;SRP=8172.09;SRR=3762;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9062	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.572	0/1:95:60,35:60:2151:35:1256:-84.7465,0,-165.259	0/1:18:14,4:14:496:4:136:-7.13213,0,-39.5557	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:20:15,5:15:536:5:176:-10.1644,0,-42.5542	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:35:18,17:18:644:17:603:-44.0635,0,-47.7545	0/0:21:21,0:21:733:0:0:0,-6.32163,-66.2897	0/1:20:9,11:9:324:11:387:-29.1453,0,-23.4853	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:28:17,11:17:608:11:387:-26.7371,0,-46.6232	0/1:107:63,44:63:2242:44:1572:-109.538,0,-169.832	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:23:15,7:15:536:7:252:-16.0465,0,-41.5925	0/0:23:23,0:23:799:0:0:0,-6.92369,-72.2276	0/0:153:152,0:152:5431:0:0:0,-45.7566,-488.557	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:127:127,0:127:4508:0:0:0,-38.2308,-405.882	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.491	0/1:47:39,8:39:1404:8:288:-12.119,0,-112.511	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:4,3:4:144:3:97:-6.9421,0,-11.2064	0/0:170:170,0:170:6072:0:0:0,-51.1751,-546.582	0/1:33:28,5:28:993:5:180:-6.61808,0,-79.7485	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	.:.:.:.:.:.:.:.	0/0:67:66,0:66:2359:0:0:0,-19.868,-212.208	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/1:23:9,14:9:305:14:500:-38.4115,0,-20.8535	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/1:29:25,4:25:900:4:144:-4.58375,0,-72.5911	0/0:111:111,0:111:3962:0:0:0,-33.4143,-356.771	0/0:29:29,0:29:1020:0:0:0,-8.72987,-92.1094	0/0:49:48,1:48:1711:1:36:0,-11.1522,-150.677	0/0:119:119,0:119:4248:0:0:0,-35.8226,-382.498	.:.:.:.:.:.:.:.	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.166	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3411	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:38:21,17:21:752:17:612:-43.9743,0,-56.5671	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:35:35,0:35:1242:0:0:0,-10.536,-112.083	0/1:87:46,41:46:1648:41:1431:-102.888,0,-122.419	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:219:218,0:218:7800:0:0:0,-65.6245,-701.668	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:29:29,0:29:1006:0:0:0,-8.72987,-90.8466	0/1:58:42,16:42:1499:16:572:-34.3537,0,-117.744	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:38:16,22:16:572:22:783:-59.3538,0,-40.3743	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/1:55:24,31:24:836:31:1112:-83.8265,0,-58.9981	0/0:57:57,0:57:1998:0:0:0,-17.1587,-180.09	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/0:47:47,0:47:1666:0:0:0,-14.1484,-150.226	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:35:27,8:27:957:8:288:-15.7314,0,-75.9078	0/1:90:56,33:56:1999:33:1188:-80.2213,0,-153.18	0/0:65:65,0:65:2308:0:0:0,-19.5669,-207.979	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/1:32:19,13:19:676:13:438:-30.1092,0,-51.535	0/1:81:51,30:51:1819:30:1067:-71.9554,0,-139.607	0/1:25:21,4:21:752:4:144:-5.78787,0,-60.4805	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.472	0/0:42:42,0:42:1471:0:0:0,-12.6433,-132.681	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/1:35:24,11:24:856:11:396:-25.4421,0,-66.8251	0/1:38:11,27:11:383:27:968:-75.9959,0,-23.3641	0/0:152:152,0:152:5421:0:0:0,-45.7566,-488.02	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684
chr02	2395431	.	C	T	6238.13	PASS	AB=0.387211;ABP=127.428;AC=28;AF=0.153846;AN=182;AO=439;CIGAR=1X;DP=4191;DPB=4191;DPRA=0.917704;EPP=956.287;EPPR=8072.35;GTI=3;LEN=1;MEANALT=1;MQM=59.6697;MQMR=59.9947;NS=91;NUMALT=1;ODDS=1.28513;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15724;QR=133999;RO=3748;RPL=439;RPP=956.287;RPPR=8072.35;RPR=0;RUN=1;SAF=0;SAP=956.287;SAR=439;SRF=0;SRP=8141.69;SRR=3748;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9062	0/0:60:59,0:59:2092:0:0:0,-17.7608,-188.188	0/1:97:61,36:61:2180:36:1269:-85.3085,0,-167.266	0/1:18:14,4:14:500:4:144:-7.76208,0,-39.9176	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:50:50,0:50:1770:0:0:0,-15.0515,-159.579	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.465	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:20:9,11:9:320:11:396:-29.9621,0,-23.1218	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:28:17,11:17:593:11:396:-27.5539,0,-45.2659	0/1:108:64,44:64:2288:44:1584:-110.317,0,-173.67	0/0:32:32,0:32:1114:0:0:0,-9.63296,-100.563	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:22:15,7:15:540:7:237:-15.0364,0,-42.3139	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:155:153,0:153:5465:0:0:0,-46.0576,-491.615	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:128:128,0:128:4542:0:0:0,-38.5318,-408.946	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:47:39,8:39:1404:8:288:-12.119,0,-112.511	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:4,3:4:144:3:108:-7.95952,0,-11.2064	0/0:171:171,0:171:6113:0:0:0,-51.4761,-550.269	0/1:33:28,5:28:1008:5:180:-6.61808,0,-81.1024	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	.:.:.:.:.:.:.:.	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:55:54,1:54:1936:1:36:0,-12.9584,-170.918	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:22:8,14:8:288:14:504:-39.0731,0,-19.6447	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:29:25,4:25:881:4:140:-4.21471,0,-70.876	0/0:112:111,0:111:3957:0:0:0,-33.4143,-355.961	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:50:49,1:49:1764:1:36:0,-11.4532,-155.445	0/0:117:116,1:116:4152:1:21:0,-33.1206,-371.763	.:.:.:.:.:.:.:.	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:29:29,0:29:1017:0:0:0,-8.72987,-91.8398	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:38:21,17:21:756:17:612:-43.9743,0,-56.9281	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.35	0/1:87:46,41:46:1652:41:1476:-106.937,0,-122.779	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:219:219,0:219:7852:0:0:0,-65.9256,-706.706	0/0:88:88,0:88:3133:0:0:0,-26.4906,-282.195	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:59:43,16:43:1525:16:576:-34.4142,0,-119.78	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:40:17,23:17:608:23:828:-62.8029,0,-43.0108	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:55:23,32:23:816:32:1152:-87.4253,0,-57.2051	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.792	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.354	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/1:34:26,8:26:928:8:288:-16.0324,0,-73.6032	0/1:90:55,35:55:1972:35:1260:-85.4192,0,-150.662	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.822	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/1:32:19,13:19:684:13:464:-32.4645,0,-52.2574	0/1:79:49,30:49:1755:30:1065:-72.376,0,-134.452	0/1:27:21,6:21:741:6:216:-11.6627,0,-58.8838	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:33:22,11:22:779:11:396:-26.0441,0,-60.4981	0/1:39:12,27:12:432:27:972:-76.0554,0,-27.481	0/0:155:155,0:155:5557:0:0:0,-46.6596,-500.251	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282
chr02	2395436	.	C	T	6251.15	PASS	AB=0.388393;ABP=124.186;AC=28;AF=0.153846;AN=182;AO=437;CIGAR=1X;DP=4195;DPB=4195;DPRA=0.806158;EPP=951.944;EPPR=8089.72;GTI=3;LEN=1;MEANALT=1.03333;MQM=59.6682;MQMR=59.9944;NS=91;NUMALT=1;ODDS=0.531611;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15692;QR=134181;RO=3756;RPL=437;RPP=951.944;RPPR=8089.72;RPR=0;RUN=1;SAF=0;SAP=951.944;SAR=437;SRF=0;SRP=8159.06;SRR=3756;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1496	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/1:96:60,36:60:2126:36:1292:-87.6825,0,-162.706	0/1:18:14,4:14:485:4:140:-7.46761,0,-38.5584	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.763	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:20:15,5:15:536:5:180:-10.5315,0,-42.5542	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:36:19,17:19:680:17:604:-43.8535,0,-50.6921	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:28:17,11:17:597:11:396:-27.5539,0,-45.6273	0/1:105:61,44:61:2139:44:1584:-111.22,0,-161.165	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:155:155,0:155:5560:0:0:0,-46.6596,-500.523	0/0:75:75,0:75:2666:0:0:0,-22.5772,-240.183	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:127:127,0:127:4524:0:0:0,-38.2308,-407.325	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:46:38,8:38:1364:8:288:-12.42,0,-109.213	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:4,3:4:144:3:108:-7.95952,0,-11.2064	0/0:171:171,0:171:6087:0:0:0,-51.4761,-547.93	0/1:33:28,5:28:1000:5:180:-6.61808,0,-80.3814	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	.:.:.:.:.:.:.:.	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:22:8,14:8:288:14:504:-39.0731,0,-19.6447	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:28:24,4:24:864:4:140:-4.51574,0,-69.6537	0/0:111:111,0:111:3953:0:0:0,-33.4143,-355.962	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:49:48,1:48:1701:1:36:0,-11.1522,-149.776	0/0:118:117,0:117:4177:0:0:0,-35.2205,-375.752	.:.:.:.:.:.:.:.	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:38:21,17:21:756:17:612:-43.9743,0,-56.9281	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:87:46,41:46:1656:41:1472:-106.577,0,-123.139	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:220:220,0:220:7827:0:0:0,-66.2266,-704.46	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.989	0/0:22:21,1:21:756:1:36:0,-3.02438,-64.7689	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:60:43,17:43:1540:17:612:-37.3516,0,-120.831	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:40:17,23:17:608:23:828:-62.8029,0,-43.0108	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/1:55:22,32:22:773:32:1148:-87.0449,0,-53.3126	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.684	0/0:107:107,0:107:3832:0:0:0,-32.2102,-345.077	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:34:26,8:26:936:8:288:-16.0324,0,-74.3244	0/1:89:55,34:55:1960:34:1224:-82.4817,0,-149.884	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:31:18,13:18:632:13:464:-32.7656,0,-47.8748	0/1:76:47,29:47:1688:29:1044:-71.3942,0,-129.329	0/1:28:22,6:22:788:6:216:-11.3617,0,-62.816	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.133	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:34:23,11:23:828:11:392:-25.3804,0,-64.6091	0/1:39:12,27:12:428:27:968:-75.6948,0,-27.1186	0/0:156:156,0:156:5570:0:0:0,-46.9607,-501.421	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562
chr02	2395960	.	G	T	13292.4	PASS	AB=0.487273;ABP=5.3318;AC=32;AF=0.170213;AN=188;AO=813;CIGAR=1X;DP=5123;DPB=5123;DPRA=1.02502;EPP=1759.74;EPPR=9310.01;GTI=2;LEN=1;MEANALT=1;MQM=59.4305;MQMR=59.9452;NS=94;NUMALT=1;ODDS=2.86793;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29002;QR=153393;RO=4310;RPL=1;RPP=1759.74;RPPR=9310.01;RPR=812;RUN=1;SAF=813;SAP=1768.42;SAR=0;SRF=4310;SRP=9362.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:17,1:17:612:1:36:0,-1.82026,-51.8152	0/0:59:59,0:59:2082:0:0:0,-17.7608,-187.64	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.576	0/1:57:21,36:21:748:36:1282:-98.5149,0,-50.4866	0/1:25:19,6:19:684:6:216:-12.2601,0,-54.3646	0/1:21:13,8:13:464:8:269:-18.1918,0,-35.7759	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/0:134:134,0:134:4774:0:0:0,-40.338,-429.801	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.813	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.539	0/1:69:33,36:33:1169:36:1292:-95.7989,0,-84.7442	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:45:25,20:25:892:20:720:-51.5824,0,-67.0533	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:42:21,21:21:752:21:756:-55.724,0,-55.363	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:30:18,12:18:644:12:417:-28.8293,0,-49.2597	0/1:64:22,42:22:773:42:1481:-114.073,0,-50.6236	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.69	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:63:39,24:39:1389:24:864:-59.1131,0,-106.342	0/0:41:41,0:41:1449:0:0:0,-12.3422,-130.703	0/0:215:215,0:215:7622:0:0:0,-64.7214,-685.414	0/0:79:79,0:79:2810:0:0:0,-23.7814,-253.137	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.08	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/1:43:14,29:14:489:29:1025:-79.6109,0,-31.3946	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:172:172,0:172:6161:0:0:0,-51.7772,-554.586	0/1:155:88,67:88:3149:67:2385:-168.118,0,-236.974	0/1:44:26,18:26:936:18:644:-45.0453,0,-71.3141	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:53:53,0:53:1880:0:0:0,-15.9546,-169.476	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/0:93:93,0:93:3256:0:0:0,-27.9958,-293.257	0/0:52:52,0:52:1822:0:0:0,-15.6536,-164.257	0/1:53:33,20:33:1184:20:716:-48.8131,0,-90.9137	0/0:79:79,0:79:2829:0:0:0,-23.7814,-254.847	0/1:40:22,18:22:788:18:648:-46.6002,0,-59.2036	0/0:73:73,0:73:2549:0:0:0,-21.9752,-228.798	0/0:93:93,0:93:3276:0:0:0,-27.9958,-295.056	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/0:58:58,0:58:2058:0:0:0,-17.4597,-185.488	0/1:10:4,6:4:144:6:212:-16.4082,0,-10.3033	0/0:53:53,0:53:1863:0:0:0,-15.9546,-167.944	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:22:17,5:17:612:5:180:-9.92471,0,-48.7908	0/1:22:17,5:17:582:5:180:-9.9231,0,-46.0762	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:134:66,68:66:2357:68:2429:-178.504,0,-172.049	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:77:77,0:77:2757:0:0:0,-23.1793,-248.362	0/0:115:115,0:115:4101:0:0:0,-34.6184,-369.275	0/0:33:32,1:32:1152:1:36:0,-6.33571,-100.392	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.354	0/1:50:29,21:29:1032:21:752:-52.8559,0,-78.142	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/1:83:34,49:34:1220:49:1726:-130.61,0,-85.1213	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:58:57,1:57:2014:1:21:0,-15.4109,-179.481	0/1:62:27,35:27:957:35:1256:-94.6747,0,-67.78	0/0:82:82,0:82:2880:0:0:0,-24.6845,-259.433	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:43:42,1:42:1504:1:36:0,-9.34601,-132.056	0/0:112:111,1:111:3950:1:36:0,-30.1171,-352.092	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:42:42,0:42:1467:0:0:0,-12.6433,-132.318	0/1:44:15,29:15:540:29:1027:-79.4893,0,-35.6912	0/1:103:49,54:49:1726:54:1936:-143.502,0,-124.614	0/0:98:98,0:98:3490:0:0:0,-29.5009,-314.295	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:66:38,28:38:1345:28:1004:-70.8055,0,-101.48	0/1:131:69,62:69:2468:62:2220:-160.606,0,-182.939	0/1:42:19,23:19:684:23:824:-61.8334,0,-49.2471	0/0:75:74,1:74:2644:1:36:0,-18.979,-234.609	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8899	0/1:78:46,32:46:1614:32:1152:-80.5037,0,-122.058	0/1:52:22,30:22:792:30:1080:-81.8473,0,-55.9521	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.46	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.526
chr02	2407076	.	G	T	20676.4	PASS	AB=0.470876;ABP=22.6156;AC=29;AF=0.155914;AN=186;AO=1260;CIGAR=1X;DP=8650;DPB=8650;DPRA=1.04244;EPP=2739.07;EPPR=16039.3;GTI=1;LEN=1;MEANALT=1.03125;MQM=59.7508;MQMR=59.9005;NS=93;NUMALT=1;ODDS=5.1618;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45120;QR=264008;RO=7389;RPL=0;RPP=2739.07;RPPR=16048;RPR=1260;RUN=1;SAF=1260;SAP=2739.07;SAR=0;SRF=7388;SRP=16039.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:155:155,0:155:5500:0:0:0,-46.6596,-494.105	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/1:144:90,54:90:3224:54:1940:-131.499,0,-247.034	0/1:71:46,25:46:1648:25:900:-59.9479,0,-127.235	0/1:30:17,13:17:608:13:468:-33.4287,0,-46.0211	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.151	0/0:152:152,0:152:5441:0:0:0,-45.7566,-489.782	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.399	0/0:110:110,0:110:3903:0:0:0,-33.1133,-351.425	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.085	0/0:75:75,0:75:2674:0:0:0,-22.5772,-240.905	0/0:70:70,0:70:2463:0:0:0,-21.0721,-221.92	0/1:81:44,37:44:1580:37:1315:-94.0962,0,-118.1	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:60:35,25:35:1260:25:900:-63.2592,0,-95.6437	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.893	0/1:64:34,29:34:1224:29:1044:-75.0017,0,-91.1951	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:123:66,57:66:2319:57:2010:-144.128,0,-171.931	0/1:121:58,63:58:2065:63:2256:-166.867,0,-149.695	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.632	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:112:62,50:62:2216:50:1796:-128.138,0,-164.935	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.24	0/0:333:333,0:333:11878:0:0:0,-100.243,-1068.81	0/0:175:175,0:175:6284:0:0:0,-52.6802,-565.534	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/0:219:219,0:219:7833:0:0:0,-65.9256,-704.997	0/0:150:150,0:150:5338:0:0:0,-45.1545,-480.552	0/1:87:42,45:42:1474:45:1616:-119.505,0,-106.761	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2496	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:286:286,0:286:10230:0:0:0,-86.0946,-920.616	0/1:164:90,74:90:3225:74:2644:-188.768,0,-241.101	0/1:64:24,40:24:860:40:1440:-110.628,0,-58.4559	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:119:119,0:119:4260:0:0:0,-35.8226,-383.437	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7946	0/0:119:119,0:119:4241:0:0:0,-35.8226,-381.87	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/1:72:42,30:42:1496:30:1080:-75.8391,0,-113.26	0/0:56:56,0:56:1974:0:0:0,-16.8577,-177.923	0/1:134:67,67:67:2408:67:2404:-175.786,0,-176.635	0/0:146:145,1:145:5197:1:36:0,-40.3521,-464.246	0/0:103:103,0:103:3677:0:0:0,-31.0061,-331.132	0/0:176:176,0:176:6285:0:0:0,-52.9813,-565.744	0/0:104:104,0:104:3705:0:0:0,-31.3071,-333.641	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:129:129,0:129:4613:0:0:0,-38.8329,-413.967	0/0:32:32,0:32:1137:0:0:0,-9.63296,-102.637	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:104:63,41:63:2241:41:1472:-101.39,0,-170.645	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	.:.:.:.:.:.:.:.	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:67:66,1:66:2364:1:36:0,-16.5707,-209.42	0/1:109:50,59:50:1800:59:2100:-156.455,0,-129.47	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:301:301,0:301:10804:0:0:0,-90.61,-972.224	0/0:194:194,0:194:6915:0:0:0,-58.3998,-622.398	0/0:32:31,1:31:1097:1:36:0,-6.03468,-95.4212	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:126:66,60:66:2333:60:2152:-156.007,0,-172.299	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.246	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7946	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:109:49,60:49:1756:60:2141:-160.143,0,-125.512	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5915	0/0:69:69,0:69:2453:0:0:0,-20.7711,-221.023	0/1:71:48,23:48:1705:23:824:-53.1102,0,-132.357	0/0:122:122,0:122:4334:0:0:0,-36.7257,-390.1	0/0:177:177,0:177:6290:0:0:0,-53.2823,-566.182	0/0:165:165,0:165:5924:0:0:0,-49.6699,-533.26	0/0:150:148,2:148:5274:2:72:0,-38.3178,-467.956	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6515	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.107	0/1:90:58,32:58:2084:32:1148:-76.5371,0,-160.735	0/1:167:83,84:83:2984:84:3002:-220.132,0,-218.519	0/0:138:138,0:138:4919:0:0:0,-41.5421,-442.857	0/0:72:72,0:72:2576:0:0:0,-21.6742,-231.709	0/1:117:66,51:66:2346:51:1823:-129.13,0,-176.165	0/1:214:110,104:110:3932:104:3721:-270.669,0,-289.65	0/1:63:35,28:35:1260:28:1008:-72.0715,0,-94.7406	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.529	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.411	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:73:37,36:37:1332:36:1288:-94.2429,0,-98.2072	0/1:77:22,55:22:792:55:1980:-155.289,0,-48.4264	0/0:150:150,0:150:5364:0:0:0,-45.1545,-482.857	0/0:134:134,0:134:4788:0:0:0,-40.338,-431.075
chr02	2416525	.	TTTTTA	TGTTTA,TGTTTT	70547.7	PASS	AB=0.436266,0.562837;ABP=42.3151,41.2157;AC=157,31;AF=0.835106,0.164894;AN=188;AO=2634,629;CIGAR=1M1X4M,1M1X3M1X;DP=3277;DPB=3288.33;DPRA=0,1.17421;EPP=5722.67,1368.87;EPPR=9.52472;GTI=2;LEN=1,6;MEANALT=1.46809,2.06061;MQM=59.9981,60;MQMR=60;NS=94;NUMALT=2;ODDS=0.241722;PAIRED=0,0;PAIREDR=0;PAO=4.16667,4.16667;PQA=91,91;PQR=594;PRO=17.6667;QA=93478,21855;QR=100;RO=3;RPL=2634,629;RPP=5722.67,1368.87;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=2634,629;SAP=5722.67,1368.87;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:32:0,32,0:0:0:32,0:1152,0:-103.99,-9.63296,0,-103.99,-9.63296,-103.99	1/1:54:0,54,0:0:0:54,0:1931,0:-174.066,-16.2556,0,-174.066,-16.2556,-174.066	1/2:57:0,31,26:0:0:31,26:1103,883:-161.853,-71.9515,-62.6196,-90.2479,0,-82.4211	1/2:22:0,11,11:0:0:11,11:384,385:-62.9081,-31.6742,-28.3628,-31.5833,0,-28.272	1/2:20:0,9,11:0:0:9,11:324,391:-58.6571,-32.2183,-29.509,-26.7966,0,-23.4853	1/1:43:0,42,0:0:0:42,0:1470,0:-132.311,-12.6433,0,-132.311,-12.6433,-132.311	1/1:58:0,58,0:0:0:58,0:2043,0:-184.139,-17.4597,0,-184.139,-17.4597,-184.139	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1529,-9.0309,0,-97.1529,-9.0309,-97.1529	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:20:0,20,0:0:0:20,0:703,0:-63.5935,-6.0206,0,-63.5935,-6.0206,-63.5935	1/1:38:0,38,0:0:0:38,0:1350,0:-121.799,-11.4391,0,-121.799,-11.4391,-121.799	1/2:19:0,9,10:0:0:9,10:320,341:-54.0931,-28.0086,-25.2993,-26.4331,0,-23.4228	1/1:12:0,11,0:0:0:11,0:391,0:-35.2707,-3.31133,0,-35.2707,-3.31133,-35.2707	1/2:13:0,4,9:0:0:4,9:140,302:-36.1903,-24.7952,-23.5911,-11.7405,0,-9.03119	1/1:29:0,29,0:0:0:29,0:1020,0:-92.1122,-8.72987,0,-92.1122,-8.72987,-92.1122	1/2:19:0,10,9:0:0:10,9:356,294:-52.74,-23.7119,-20.7016,-29.0115,0,-26.3022	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:58:0,31,27:0:0:31,27:1095,955:-167.312,-78.1382,-68.8062,-89.5272,0,-81.3994	1/2:58:0,31,27:0:0:31,27:1086,926:-163.542,-75.1732,-65.8413,-88.3657,0,-80.2379	1/1:66:0,64,1:0:0:64,1:2258,36:-203.122,-19.2659,0,-200.185,-16.3285,-199.884	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/2:73:0,14,59:0:0:14,59:496,2073:-209.486,-169.08,-164.865,-40.7598,0,-22.9991	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:98:1,97,0:1:30:97,0:3460,0:-308.611,-26.5014,0,-308.912,-29.1999,-311.31	1/1:48:0,47,0:0:0:47,0:1664,0:-149.697,-14.1484,0,-149.697,-14.1484,-149.697	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:93:0,92,0:0:0:92,0:3248,0:-292.182,-27.6948,0,-292.182,-27.6948,-292.182	1/1:63:0,63,0:0:0:63,0:2238,0:-201.343,-18.9649,0,-201.343,-18.9649,-201.343	1/2:57:0,27,30:0:0:27,30:963,995:-158.972,-80.4591,-72.3313,-78.4984,0,-69.4675	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:7:0,7,0:0:0:7,0:243,0:-22.2075,-2.10721,0,-22.2075,-2.10721,-22.2075	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:5:0,4,1:0:0:4,1:135,30:-13.6695,-2.69854,-1.49442,-11.2784,0,-10.9774	1/1:53:0,52,0:0:0:52,0:1844,0:-165.881,-15.6536,0,-165.881,-15.6536,-165.881	1/2:90:0,26,64:0:0:26,64:924,2246:-258.435,-183.138,-175.311,-75.6509,0,-56.385	1/2:10:0,4,6:0:0:4,6:144,215:-29.6433,-17.893,-16.6889,-12.1095,0,-10.3033	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:56:0,56,0:0:0:56,0:1983,0:-178.744,-16.8577,0,-178.744,-16.8577,-178.744	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:27:0,14,13:0:0:14,13:495,435:-75.8817,-35.5567,-31.3423,-40.6686,0,-36.7552	1/1:41:0,41,0:0:0:41,0:1436,0:-129.533,-12.3422,0,-129.533,-12.3422,-129.533	1/2:49:0,22,27:0:0:22,27:788,945:-141.107,-76.8425,-70.2198,-64.2277,0,-56.0999	1/1:93:1,91,1:1:36:91,1:3213,36:-285.795,-24.4563,0,-283.159,-24.4563,-285.795	1/1:62:0,62,0:0:0:62,0:2215,0:-199.614,-18.6639,0,-199.614,-18.6639,-199.614	1/1:66:0,66,0:0:0:66,0:2359,0:-212.568,-19.868,0,-212.568,-19.868,-212.568	1/1:55:0,54,0:0:0:54,0:1928,0:-173.437,-16.2556,0,-173.437,-16.2556,-173.437	1/2:4:0,2,2:0:0:2,2:72,71:-12.0173,-6.14,-5.53794,-6.23466,0,-5.6326	1/1:68:0,67,0:0:0:67,0:2377,0:-213.829,-20.169,0,-213.829,-20.169,-213.829	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:40:0,12,28:0:0:12,28:428,980:-114.976,-80.0844,-76.472,-35.2464,0,-26.8176	1/2:33:0,9,24:0:0:9,24:324,841:-95.2228,-68.7834,-66.0741,-26.7966,0,-19.5719	1/2:5:0,3,2:0:0:3,2:104,71:-14.5882,-6.14,-5.23691,-8.79971,0,-8.19765	1/1:4:0,4,0: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chr02	2557457	.	G	A	113373	PASS	AB=0.517704;ABP=10.9296;AC=155;AF=0.824468;AN=188;AO=6818;CIGAR=1X;DP=8236;DPB=8236;DPRA=88.5484;EPP=14643.5;EPPR=3028.09;GTI=1;LEN=1;MEANALT=1.01075;MQM=32.0631;MQMR=35.5222;NS=94;NUMALT=1;ODDS=3.3847;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243612;QR=50603;RO=1417;RPL=19;RPP=14643.5;RPPR=3028.09;RPR=6799;RUN=1;SAF=6818;SAP=14808.1;SAR=0;SRF=1417;SRP=3079.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:812:-68.5287,-6.92369,0	1/1:135:1,134:1:36:134:4764:-393.286,-37.1364,0	1/1:54:0,54:0:0:54:1902:-156.359,-16.2556,0	0/1:129:48,80:48:1728:80:2843:-191.909,0,-110.414	0/1:25:13,12:13:468:12:432:-28.6324,0,-33.2372	0/1:30:22,8:22:784:8:284:-15.1538,0,-55.4247	1/1:140:1,139:1:36:139:4972:-397.646,-38.6897,0	1/1:149:0,149:0:0:149:5335:-443.064,-44.8535,0	1/1:45:0,45:0:0:45:1583:-130.97,-13.5464,0	1/1:111:0,111:0:0:111:3976:-321.428,-33.4143,0	1/1:93:1,92:1:36:92:3296:-202.333,-25.4371,0	1/1:91:1,90:1:36:90:3214:-202.177,-24.3392,0	1/1:82:0,82:0:0:82:2948:-187.446,-24.6845,0	0/1:188:109,79:109:3889:79:2833:-118.831,0,-219.713	1/1:68:0,68:0:0:68:2444:-150.662,-20.47,0	0/1:55:19,36:19:684:36:1292:-63.8212,0,-32.1056	1/1:144:0,144:0:0:144:5168:-331.39,-43.3483,0	0/1:65:31,34:31:1116:34:1209:-57.2304,0,-59.2206	1/1:80:0,80:0:0:80:2864:-183.61,-24.0824,0	0/1:65:23,42:23:828:42:1508:-102.017,0,-51.0418	0/1:182:103,79:103:3689:79:2832:-177.034,0,-262.786	1/1:81:0,81:0:0:81:2899:-232.838,-24.3834,0	1/1:16:0,16:0:0:16:576:-46.8472,-4.81648,0	0/1:84:47,37:47:1688:37:1328:-84.6843,0,-119.58	1/1:46:0,46:0:0:46:1648:-134.359,-13.8474,0	1/1:245:1,244:1:32:244:8709:-700.371,-70.6162,0	1/1:170:0,170:0:0:170:6046:-495.104,-51.1751,0	1/1:36:0,36:0:0:36:1288:-80.336,-10.8371,0	1/1:258:0,258:0:0:258:9211:-739.801,-77.6657,0	1/1:120:0,120:0:0:120:4266:-351.712,-36.1236,0	0/1:151:115,36:115:4090:36:1292:-56.5541,0,-307.349	1/1:9:0,9:0:0:9:320:-26.7707,-2.70927,0	1/1:11:0,11:0:0:11:396:-33.0331,-3.31133,0	1/1:5:0,5:0:0:5:180:-15.3923,-1.50515,0	1/1:3:0,3:0:0:3:104:-9.03463,-0.90309,0	0/1:8:3,5:3:108:5:180:-12.984,0,-7.28879	1/1:193:0,193:0:0:193:6912:-426.654,-58.0988,0	0/1:147:71,76:71:2556:76:2736:-178.647,0,-173.46	0/1:88:35,53:35:1256:53:1896:-93.9415,0,-64.8321	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.45449	1/1:115:0,115:0:0:115:4106:-335.014,-34.6185,0	1/1:54:0,54:0:0:54:1940:-121.613,-16.2556,0	1/1:95:0,95:0:0:95:3375:-277.371,-28.5979,0	1/1:84:0,84:0:0:84:3020:-186.671,-25.2865,0	0/1:57:20,37:20:716:37:1332:-65.2359,0,-33.8148	1/1:92:0,92:0:0:92:3236:-263.445,-27.6948,0	0/1:99:38,61:38:1341:61:2165:-150.408,0,-86.2416	1/1:175:1,174:1:36:174:6193:-496.235,-49.2258,0	1/1:91:0,91:0:0:91:3268:-259.221,-27.3937,0	1/1:82:0,82:0:0:82:2910:-233.656,-24.6845,0	1/1:127:1,126:1:36:126:4508:-363.004,-34.7763,0	0/1:6:3,3:3:108:3:108:-7.28306,0,-7.86639	1/1:80:0,80:0:0:80:2857:-237.279,-24.0824,0	1/1:14:0,14:0:0:14:492:-38.1331,-4.21442,0	1/1:18:0,18:0:0:18:648:-54.2113,-5.41854,0	0/1:127:72,55:72:2542:55:1968:-124.523,0,-179.325	0/1:13:11,2:11:396:2:72:-2.25431,0,-29.6488	0/1:5:4,1:4:144:1:36:-1.74101,0,-11.2765	1/1:16:0,16:0:0:16:564:-46.5663,-4.81648,0	1/1:46:1,45:1:36:45:1614:-126.911,-10.3929,0	0/1:152:61,91:61:2188:91:3256:-156.207,0,-111.328	1/1:10:0,10:0:0:10:360:-29.54,-3.0103,0	1/1:150:1,149:1:36:149:5315:-425.257,-41.7,0	0/1:223:135,88:135:4817:88:3141:-183.534,0,-349.443	1/1:87:4,83:4:144:83:2962:-232.267,-14.4079,0	1/1:93:0,93:0:0:93:3301:-266.802,-27.9958,0	0/1:120:40,80:40:1431:80:2849:-192.341,0,-87.7864	1/1:67:1,66:1:36:66:2345:-183.264,-16.7145,0	1/1:77:0,77:0:0:77:2768:-172.401,-23.1793,0	1/1:89:0,89:0:0:89:3166:-263.934,-26.7917,0	0/1:91:39,52:39:1392:52:1849:-87.3349,0,-70.7738	1/1:23:0,23:0:0:23:828:-67.4093,-6.92369,0	1/1:128:0,128:0:0:128:4583:-380.749,-38.5318,0	0/1:41:23,18:23:813:18:640:-41.7193,0,-58.2699	1/1:47:0,47:0:0:47:1656:-136.501,-14.1484,0	1/1:114:0,114:0:0:114:4069:-329.5,-34.3174,0	1/1:114:0,114:0:0:114:4072:-336.204,-34.3174,0	1/1:112:0,112:0:0:112:3982:-330.706,-33.7154,0	1/1:15:0,15:0:0:15:540:-45.3639,-4.51545,0	1/1:102:0,102:0:0:102:3660:-300.457,-30.7051,0	0/1:81:29,52:29:1021:52:1851:-128.694,0,-64.3899	0/1:123:52,71:52:1860:71:2540:-168.376,0,-120.512	1/1:88:0,88:0:0:88:3160:-195.028,-26.4906,0	1/1:71:0,71:0:0:71:2548:-158.099,-21.3731,0	0/1:97:36,61:36:1264:61:2188:-106.457,0,-58.2806	0/1:190:71,119:71:2518:119:4272:-204.446,0,-121.437	0/1:47:21,26:21:756:26:936:-45.5475,0,-41.0041	1/1:96:0,96:0:0:96:3444:-219.801,-28.8989,0	1/1:87:0,87:0:0:87:3120:-199.164,-26.1896,0	1/1:95:0,95:0:0:95:3408:-211.365,-28.5979,0	0/1:156:66,90:66:2368:90:3228:-153.545,0,-120.236	0/1:64:42,22:42:1508:22:788:-29.6141,0,-87.5241	1/1:64:0,64:0:0:64:2285:-189.367,-19.2659,0	1/1:100:0,100:0:0:100:3592:-220.048,-30.103,0
chr02	2557475	.	C	T	24330.2	PASS	AB=0.475869;ABP=17.2628;AC=33;AF=0.175532;AN=188;AO=1355;CIGAR=1X;DP=8023;DPB=8023;DPRA=1.1986;EPP=444.717;EPPR=4632.91;GTI=1;LEN=1;MEANALT=1.02439;MQM=35.4133;MQMR=31.9815;NS=94;NUMALT=1;ODDS=3.16884;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48200;QR=237845;RO=6666;RPL=940;RPP=444.717;RPPR=4632.91;RPR=415;RUN=1;SAF=1355;SAP=2945.36;SAR=0;SRF=6666;SRP=14478;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:747:0:0:0,-6.32163,-62.8397	0/0:129:129,0:129:4596:0:0:0,-38.8329,-382.383	0/0:53:53,0:53:1869:0:0:0,-15.9546,-154.157	0/1:122:78,44:78:2800:44:1570:-99.157,0,-189.769	0/1:23:12,11:12:428:11:366:-25.1487,0,-28.8992	0/1:28:8,20:8:284:20:720:-50.5776,0,-15.6709	0/0:138:137,1:137:4887:1:36:0,-38.0876,-390.826	0/0:147:147,0:147:5247:0:0:0,-44.2514,-435.36	0/0:45:45,0:45:1608:0:0:0,-13.5463,-131.944	0/0:113:113,0:113:4007:0:0:0,-34.0164,-324.626	0/0:89:89,0:89:3184:0:0:0,-26.7917,-195.532	0/0:91:90,1:90:3189:1:27:0,-25.1696,-203.209	0/0:82:82,0:82:2926:0:0:0,-24.6845,-187.449	0/1:182:81,101:81:2884:101:3566:-199.633,0,-124.93	0/0:66:66,0:66:2355:0:0:0,-19.868,-146.489	0/1:53:35,18:35:1256:18:644:-30.0806,0,-62.203	0/0:141:141,0:141:5021:0:0:0,-42.4452,-323.968	0/1:65:35,30:35:1256:30:1075:-56.9683,0,-60.1283	0/0:80:80,0:80:2872:0:0:0,-24.0824,-183.71	0/1:63:40,23:40:1428:23:828:-51.6439,0,-96.3742	0/1:178:76,102:76:2728:102:3640:-260.086,0,-169.452	0/0:78:78,0:78:2796:0:0:0,-23.4803,-224.483	0/0:15:15,0:15:536:0:0:0,-4.51545,-43.7239	0/1:82:36,46:36:1288:46:1652:-117.073,0,-82.1204	0/0:46:46,0:46:1652:0:0:0,-13.8474,-134.54	0/0:241:240,1:240:8568:1:36:0,-69.0937,-688.572	0/0:166:166,0:166:5947:0:0:0,-49.971,-485.668	0/0:36:36,0:36:1273:0:0:0,-10.8371,-79.8819	0/0:254:254,0:254:9054:0:0:0,-76.4616,-727.353	0/0:113:113,0:113:4032:0:0:0,-34.0164,-331.333	0/1:137:33,104:33:1180:104:3716:-278.671,0,-53.5142	0/0:8:8,0:8:280:0:0:0,-2.40824,-23.5757	0/0:10:10,0:10:360:0:0:0,-3.0103,-30.064	0/0:5:5,0:5:167:0:0:0,-1.50515,-14.5156	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.22126	0/1:8:5,3:5:180:3:108:-7.28879,0,-12.984	0/0:185:185,0:185:6594:0:0:0,-55.6905,-408.47	0/1:147:78,69:78:2779:69:2453:-165.741,0,-182.232	0/1:86:51,35:51:1828:35:1240:-65.0187,0,-90.0604	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	0/0:112:112,0:112:3995:0:0:0,-33.7154,-324.3	0/0:52:52,0:52:1851:0:0:0,-15.6536,-115.737	0/0:92:92,0:92:3253:0:0:0,-27.6948,-266.955	0/0:83:83,0:83:2959:0:0:0,-24.9855,-183.31	0/1:56:36,20:36:1287:20:712:-34.0277,0,-63.1553	0/0:89:89,0:89:3188:0:0:0,-26.7917,-258.934	0/1:96:60,36:60:2109:36:1288:-82.6675,0,-147.922	0/0:173:172,1:172:6149:1:36:0,-48.6237,-491.693	0/0:91:91,0:91:3234:0:0:0,-27.3937,-256.925	0/0:79:79,0:79:2836:0:0:0,-23.7814,-227.086	0/0:126:126,0:126:4465:0:0:0,-37.9298,-363.673	0/1:6:3,3:3:108:3:93:-6.59717,0,-7.28306	0/0:79:79,0:79:2820:0:0:0,-23.7814,-234.706	0/0:11:11,0:11:396:0:0:0,-3.31133,-30.8212	0/0:16:16,0:16:568:0:0:0,-4.81648,-48.0381	0/1:119:54,65:54:1932:65:2320:-162.734,0,-123.933	0/1:12:2,10:2:72:10:356:-27.5338,0,-2.55534	0/1:5:1,4:1:36:4:144:-11.2765,0,-1.74101	0/0:16:16,0:16:560:0:0:0,-4.81648,-46.4515	0/0:45:44,1:44:1559:1:36:0,-10.0919,-123.248	0/1:148:91,57:91:3264:57:2036:-100.026,0,-156.304	0/0:10:10,0:10:360:0:0:0,-3.0103,-29.54	0/0:149:148,1:148:5270:1:36:0,-41.399,-421.552	0/1:217:86,131:86:3080:131:4653:-336.152,0,-180.565	0/0:86:81,5:81:2895:5:176:0,-11.2853,-223.232	0/0:91:91,0:91:3237:0:0:0,-27.3937,-261.672	0/1:118:77,41:77:2739:41:1464:-91.3357,0,-184.345	0/0:67:66,1:66:2344:1:36:0,-16.7145,-183.314	0/0:75:75,0:75:2662:0:0:0,-22.5772,-167.424	0/0:88:88,0:88:3137:0:0:0,-26.4906,-261.02	0/1:92:52,40:52:1860:40:1425:-72.4117,0,-87.454	0/0:21:21,0:21:756:0:0:0,-6.32163,-61.5662	0/0:125:125,0:125:4476:0:0:0,-37.6287,-371.401	0/1:39:17,22:17:604:22:777:-55.7699,0,-39.3096	0/0:46:46,0:46:1636:0:0:0,-13.8474,-133.928	0/0:112:111,0:111:3969:0:0:0,-33.4143,-320.862	0/0:109:109,0:109:3893:0:0:0,-32.8123,-320.252	0/0:110:110,0:110:3916:0:0:0,-33.1133,-325.196	0/0:14:14,0:14:496:0:0:0,-4.21442,-41.8707	0/0:102:102,0:102:3664:0:0:0,-30.7051,-300.773	0/1:79:51,28:51:1820:28:1004:-63.2692,0,-128.283	0/1:120:70,50:70:2508:50:1781:-115.141,0,-166.558	0/0:88:88,0:88:3160:0:0:0,-26.4906,-194.918	0/0:72:72,0:72:2571:0:0:0,-21.6742,-159.063	0/1:94:59,35:59:2112:35:1248:-57.5656,0,-102.899	0/1:184:114,69:114:4079:69:2442:-118.312,0,-195.336	0/1:45:25,20:25:873:20:703:-38.4426,0,-43.1735	0/0:94:94,0:94:3362:0:0:0,-28.2968,-214.947	0/0:87:87,0:87:3108:0:0:0,-26.1896,-199.013	0/0:91:91,0:91:3233:0:0:0,-27.3937,-201.823	0/1:152:88,64:88:3147:64:2277:-115.551,0,-150.028	0/1:62:22,40:22:784:40:1408:-81.8779,0,-30.1748	0/0:51:50,1:50:1771:1:36:0,-12.1064,-140.798	0/0:97:97,0:97:3488:0:0:0,-29.1999,-213.428
chr02	2557505	.	A	G	107787	PASS	AB=0.523055;ABP=16.127;AC=155;AF=0.824468;AN=188;AO=6629;CIGAR=1X;DP=8002;DPB=8002;DPRA=86.0323;EPP=14397.7;EPPR=2975.76;GTI=1;LEN=1;MEANALT=1.03226;MQM=31.9246;MQMR=35.382;NS=94;NUMALT=1;ODDS=3.09656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=234041;QR=48715;RO=1369;RPL=6629;RPP=14397.7;RPPR=2975.76;RPR=0;RUN=1;SAF=6629;SAP=14397.7;SAR=0;SRF=1369;SRP=2975.76;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:676:-56.9297,-5.71957,0	1/1:130:0,130:0:0:130:4622:-385.217,-39.1339,0	1/1:51:0,51:0:0:51:1803:-148.563,-15.3525,0	0/1:123:45,78:45:1620:78:2760:-187.315,0,-102.977	0/1:25:13,12:13:464:12:424:-28.0751,0,-32.9483	0/1:28:21,7:21:744:7:244:-12.5012,0,-52.7358	1/1:137:1,136:1:36:136:4776:-383.219,-37.7866,0	1/1:143:0,143:0:0:143:5092:-421.884,-43.0473,0	1/1:45:0,45:0:0:45:1591:-130.825,-13.5464,0	1/1:111:0,111:0:0:111:3883:-315.892,-33.4143,0	1/1:87:0,87:0:0:87:3080:-190.669,-26.1896,0	1/1:84:0,84:0:0:84:2938:-191.613,-25.2865,0	1/1:81:0,81:0:0:81:2840:-184.175,-24.3834,0	0/1:183:103,80:103:3642:80:2841:-122.182,0,-205.431	1/1:67:0,67:0:0:67:2319:-147.417,-20.169,0	0/1:55:19,36:19:680:36:1265:-63.2174,0,-32.0175	1/1:141:0,141:0:0:141:4974:-321.842,-42.4452,0	0/1:65:31,34:31:1116:34:1208:-57.523,0,-59.2206	1/1:79:0,79:0:0:79:2798:-180.693,-23.7814,0	0/1:63:21,42:21:748:42:1479:-101.065,0,-45.1402	0/1:174:100,74:100:3567:74:2599:-161.572,0,-255.249	1/1:79:0,79:0:0:79:2804:-226.054,-23.7814,0	1/1:15:0,15:0:0:15:532:-43.5221,-4.51545,0	0/1:82:46,36:46:1630:36:1268:-80.8539,0,-115.556	1/1:44:0,44:0:0:44:1545:-127.166,-13.2453,0	1/1:241:1,240:1:36:240:8518:-684.322,-69.0937,0	1/1:164:0,164:0:0:164:5764:-472.913,-49.3689,0	1/1:35:0,35:0:0:35:1256:-77.993,-10.5361,0	1/1:253:0,253:0:0:253:8911:-720.135,-76.1606,0	1/1:114:0,114:0:0:114:4046:-332.528,-34.3174,0	0/1:144:109,35:109:3879:35:1241:-54.6484,0,-290.154	1/1:9:0,9:0:0:9:315:-26.4008,-2.70927,0	1/1:11:0,11:0:0:11:396:-33.0331,-3.31133,0	1/1:5:0,5:0:0:5:176:-15.1481,-1.50515,0	1/1:2:0,2:0:0:2:68:-6.10554,-0.60206,0	0/1:8:3,5:3:104:5:171:-12.3516,0,-6.97877	1/1:191:0,191:0:0:191:6784:-421.51,-57.4967,0	0/1:145:69,76:69:2464:76:2693:-176.21,0,-166.868	0/1:86:34,52:34:1211:52:1835:-91.5104,0,-62.4795	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.45449	1/1:111:0,111:0:0:111:3879:-318.079,-33.4143,0	1/1:49:0,49:0:0:49:1714:-108.527,-14.7505,0	1/1:91:0,91:0:0:91:3221:-264.861,-27.3937,0	1/1:83:0,83:0:0:83:2887:-182.053,-24.9855,0	0/1:56:20,36:20:702:36:1262:-62.8289,0,-33.6008	1/1:90:0,90:0:0:90:3204:-260.778,-27.0927,0	0/1:94:35,59:35:1235:59:2104:-147.048,0,-77.9893	1/1:170:1,168:1:36:168:5986:-478.901,-47.7435,0	1/1:89:0,89:0:0:89:3111:-250.534,-26.7917,0	1/1:80:0,80:0:0:80:2818:-226.911,-24.0824,0	1/1:120:0,120:0:0:120:4271:-347.465,-36.1236,0	0/1:6:3,3:3:108:3:108:-7.28306,0,-7.86639	1/1:76:0,76:0:0:76:2681:-223.715,-22.8783,0	1/1:13:0,13:0:0:13:445:-35.9334,-3.91339,0	1/1:18:0,18:0:0:18:635:-53.5851,-5.41854,0	0/1:124:69,55:69:2431:55:1945:-123.841,0,-170.979	0/1:13:11,2:11:388:2:72:-2.25431,0,-29.3256	0/1:5:4,1:4:144:1:36:-1.74101,0,-11.2765	1/1:14:0,14:0:0:14:489:-40.1712,-4.21442,0	1/1:45:1,44:1:36:44:1546:-122.16,-10.0919,0	0/1:148:57,91:57:2035:91:3205:-155.016,0,-99.9731	1/1:10:0,10:0:0:10:360:-29.54,-3.0103,0	1/1:148:1,147:1:36:147:5189:-416.105,-41.0979,0	0/1:221:133,88:133:4739:88:3116:-182.899,0,-342.507	1/1:87:5,82:5:180:82:2916:-225.319,-11.2934,0	1/1:88:0,88:0:0:88:3104:-250.831,-26.4906,0	0/1:118:40,78:40:1400:78:2747:-185.222,0,-85.9883	1/1:69:1,68:1:36:68:2404:-188.32,-17.3166,0	1/1:73:0,73:0:0:73:2586:-161.57,-21.9752,0	1/1:86:0,86:0:0:86:3019:-252.55,-25.8886,0	0/1:90:37,53:37:1324:53:1888:-90.3577,0,-66.0846	1/1:23:0,23:0:0:23:820:-67.0069,-6.92369,0	1/1:123:0,122:0:0:122:4312:-360.78,-36.7257,0	0/1:39:21,18:21:756:18:644:-42.5617,0,-53.8909	1/1:43:0,43:0:0:43:1535:-125.816,-12.9443,0	1/1:112:0,112:0:0:112:3960:-322.909,-33.7154,0	1/1:110:0,110:0:0:110:3866:-319.695,-33.1133,0	1/1:109:0,107:0:0:107:3779:-314.345,-32.2102,0	1/1:14:0,14:0:0:14:500:-42.1709,-4.21442,0	1/1:100:0,100:0:0:100:3546:-291.991,-30.103,0	0/1:77:27,50:27:968:50:1736:-122.663,0,-60.7621	0/1:122:51,71:51:1808:71:2504:-166.959,0,-117.751	1/1:88:1,87:1:36:87:3069:-189.602,-23.9319,0	1/1:71:0,71:0:0:71:2517:-156.42,-21.3731,0	0/1:96:36,60:36:1288:60:2124:-104.106,0,-59.6768	0/1:188:69,119:69:2449:119:4186:-204.017,0,-117.745	0/1:46:21,25:21:756:25:887:-43.143,0,-41.3051	1/1:92:0,92:0:0:92:3262:-210.906,-27.6948,0	1/1:84:0,84:0:0:84:2971:-192.167,-25.2865,0	1/1:95:0,95:0:0:95:3330:-210.055,-28.5979,0	0/1:153:65,88:65:2328:88:3078:-148.419,0,-118.512	0/1:64:42,22:42:1483:22:767:-29.3781,0,-86.9458	1/1:49:1,48:1:36:48:1684:-134.105,-11.5043,0	1/1:99:0,99:0:0:99:3481:-216.965,-29.802,0
chr02	2557936	.	A	G	47917.3	PASS	AB=0.489786;ABP=6.91371;AC=32;AF=0.170213;AN=188;AO=2129;CIGAR=1X;DP=12679;DPB=12679;DPRA=1.24236;EPP=30.7784;EPPR=3.32351;GTI=0;LEN=1;MEANALT=1.04545;MQM=59.9962;MQMR=59.9854;NS=94;NUMALT=1;ODDS=2.90227;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75754;QR=376058;RO=10545;RPL=9;RPP=4548.23;RPPR=22032.3;RPR=2120;RUN=1;SAF=1156;SAP=37.1674;SAR=973;SRF=5354;SRP=8.4815;SRR=5191;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/0:221:221,0:221:7906:0:0:0,-66.5276,-711.559	0/0:220:220,0:220:7858:0:0:0,-66.2266,-707.246	0/1:211:106,105:106:3796:105:3736:-272.92,0,-278.318	0/1:105:62,43:62:2215:43:1514:-104.942,0,-168.006	0/1:79:48,31:48:1686:31:1103:-75.7984,0,-128.241	0/0:247:247,0:247:8788:0:0:0,-74.3544,-790.911	0/0:253:252,1:252:9002:1:36:0,-72.5623,-806.56	0/0:155:155,0:155:5548:0:0:0,-46.6596,-499.445	0/0:193:193,0:193:6820:0:0:0,-58.0988,-613.873	0/0:133:132,1:132:4697:1:36:0,-36.4387,-419.293	0/0:148:148,0:148:5312:0:0:0,-44.5524,-478.213	0/0:152:152,0:152:5444:0:0:0,-45.7566,-490.089	0/1:117:71,46:71:2517:46:1632:-111.948,0,-191.56	0/0:119:118,0:118:4235:0:0:0,-35.5215,-380.968	0/1:101:49,52:49:1739:52:1846:-136.015,0,-126.39	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/1:91:41,50:41:1472:50:1792:-134.169,0,-105.382	0/0:119:119,0:119:4252:0:0:0,-35.8226,-382.86	0/1:229:121,107:121:4331:107:3808:-274.061,0,-321.109	0/1:217:108,109:108:3844:109:3872:-283.352,0,-280.832	0/0:56:56,0:56:1980:0:0:0,-16.8577,-178.472	0/0:109:108,1:108:3839:1:32:0,-29.613,-342.506	0/1:200:99,101:99:3548:101:3597:-263.73,0,-259.322	0/0:98:98,0:98:3440:0:0:0,-29.5009,-309.811	0/0:286:286,0:286:10195:0:0:0,-86.0946,-917.477	0/0:291:290,1:290:10379:1:32:0,-84.4004,-930.83	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/0:312:311,1:311:11090:1:36:0,-90.3231,-994.399	0/0:76:74,2:74:2656:2:72:0,-16.0416,-232.449	0/1:154:83,71:83:2964:71:2506:-179.432,0,-220.635	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:29:29,0:29:1020:0:0:0,-8.72987,-92.1094	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:3,5:3:104:5:176:-13.7768,0,-7.29457	0/0:347:346,1:346:12350:1:36:0,-100.859,-1107.74	0/1:142:74,68:74:2645:68:2431:-176.299,0,-195.549	0/1:134:59,75:59:2096:75:2688:-201.827,0,-148.572	0/1:4:2,2:2:68:2:64:-4.87398,0,-5.25359	0/0:170:170,0:170:6022:0:0:0,-51.1751,-542.086	0/0:82:82,0:82:2913:0:0:0,-24.6845,-262.405	0/0:201:200,1:200:7135:1:36:0,-56.9088,-638.609	0/0:148:148,0:148:5261:0:0:0,-44.5524,-473.624	0/1:107:51,56:51:1827:56:1983:-146.534,0,-132.5	0/0:97:97,0:97:3457:0:0:0,-29.1999,-311.342	0/1:159:83,75:83:2972:75:2661:-191.813,0,-219.79	0/0:179:178,0:178:6313:0:0:0,-53.5833,-568.012	0/0:101:101,0:101:3582:0:0:0,-30.404,-322.586	0/0:195:194,1:194:6900:1:36:0,-55.1026,-617.473	0/0:218:218,0:218:7762:0:0:0,-65.6245,-698.611	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:224:224,0:224:8017:0:0:0,-67.4307,-721.549	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:165:75,90:75:2672:90:3188:-237.474,0,-189.952	0/1:34:17,17:17:604:17:612:-45.1784,0,-44.4556	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:101:98,3:98:3465:3:108:0,-20.3289,-301.986	0/1:167:76,91:76:2705:91:3220:-239.751,0,-193.421	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:149:149,0:149:5300:0:0:0,-44.8535,-477.136	0/1:255:135,120:135:4856:120:4280:-308.617,0,-360.428	0/0:135:133,2:133:4727:2:72:0,-33.8023,-418.753	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/1:181:97,84:97:3465:84:2978:-213.764,0,-257.574	0/0:144:144,0:144:5114:0:0:0,-43.3483,-460.404	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.843	0/0:142:142,0:142:5077:0:0:0,-42.7463,-457.073	0/1:124:65,59:65:2328:59:2116:-153.381,0,-172.452	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.9615	0/0:75:75,0:75:2669:0:0:0,-22.5772,-240.454	0/1:67:30,37:30:1072:37:1312:-98.2127,0,-76.6234	0/0:258:258,0:258:9164:0:0:0,-77.6657,-824.738	0/0:227:227,0:227:8058:0:0:0,-68.3338,-725.242	0/0:129:129,0:129:4624:0:0:0,-38.8329,-416.133	0/0:174:174,0:174:6232:0:0:0,-52.3792,-560.967	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:161:157,4:157:5592:4:144:0,-35.1522,-490.09	0/1:163:96,67:96:3432:67:2408:-167.908,0,-260.026	0/1:325:169,156:169:5989:156:5540:-400.894,0,-440.508	0/0:199:198,0:198:7075:0:0:0,-59.6039,-636.564	0/0:94:94,0:94:3371:0:0:0,-28.2968,-303.605	0/1:162:75,87:75:2677:87:3087:-229.289,0,-192.407	0/1:240:118,122:118:4232:122:4354:-319.787,0,-308.812	0/1:70:43,27:43:1544:27:964:-66.0047,0,-118.181	0/0:127:127,0:127:4544:0:0:0,-38.2308,-409.127	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.97	0/0:83:83,0:83:2955:0:0:0,-24.9855,-266.184	0/1:163:87,76:87:3120:76:2711:-195.166,0,-231.958	0/1:122:46,76:46:1652:76:2719:-208.227,0,-112.243	0/0:82:82,0:82:2919:0:0:0,-24.6845,-262.816	0/0:246:246,0:246:8765:0:0:0,-74.0534,-788.841
chr02	2557944	.	T	C	46055.2	PASS	AB=0.489049;ABP=7.48074;AC=32;AF=0.170213;AN=188;AO=2119;CIGAR=1X;DP=12619;DPB=12619;DPRA=1.19796;EPP=4587;EPPR=22682;GTI=0;LEN=1;MEANALT=1.11364;MQM=59.9981;MQMR=59.9877;NS=94;NUMALT=1;ODDS=1.98992;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73777;QR=372305;RO=10492;RPL=1134;RPP=25.7611;RPPR=4.99799;RPR=985;RUN=1;SAF=1136;SAP=26.999;SAR=983;SRF=5209;SRP=4.14364;SRR=5283;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1155:0:0:0,-9.93399,-104.256	0/0:226:226,0:226:8071:0:0:0,-68.0328,-726.407	0/0:226:226,0:226:8050:0:0:0,-68.0328,-724.521	0/1:210:104,106:104:3659:106:3710:-270.888,0,-266.297	0/1:107:59,48:59:2107:48:1678:-119.094,0,-157.688	0/1:80:51,29:51:1824:29:998:-66.0433,0,-140.359	0/0:246:246,0:246:8745:0:0:0,-74.0534,-787.044	0/0:253:252,1:252:8986:1:36:0,-72.5623,-805.125	0/0:150:150,0:150:5312:0:0:0,-45.1545,-478.219	0/0:191:191,0:191:6794:0:0:0,-57.4967,-611.534	0/0:129:128,1:128:4507:1:36:0,-35.2346,-402.2	0/0:147:147,0:147:5180:0:0:0,-44.2514,-466.345	0/0:148:148,0:148:5285:0:0:0,-44.5524,-475.785	0/1:121:75,45:75:2633:45:1539:-102.312,0,-200.732	0/0:119:119,0:119:4215:0:0:0,-35.8226,-379.532	0/1:102:49,53:49:1713:53:1817:-133.102,0,-123.748	0/0:93:93,0:93:3292:0:0:0,-27.9958,-296.5	0/1:93:41,52:41:1452:52:1791:-133.47,0,-102.98	0/0:123:123,0:123:4356:0:0:0,-37.0267,-391.114	0/1:226:117,108:117:4156:108:3776:-271.95,0,-306.132	0/1:212:103,109:103:3658:109:3851:-282.972,0,-265.607	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/0:107:106,1:106:3788:1:32:0,-29.0109,-337.92	0/1:204:102,102:102:3626:102:3598:-262.617,0,-265.136	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:287:287,0:287:10230:0:0:0,-86.3956,-920.63	0/0:292:291,0:291:10348:0:0:0,-87.5997,-930.891	0/0:79:79,0:79:2801:0:0:0,-23.7814,-252.33	0/0:309:307,1:307:10965:1:36:0,-89.4089,-983.22	0/0:80:78,2:78:2766:2:68:0,-17.6247,-242.724	0/1:147:82,65:82:2932:65:2324:-165.169,0,-219.863	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:28:28,0:28:982:0:0:0,-8.42884,-88.6917	0/0:5:5,0:5:162:0:0:0,-1.50515,-14.8988	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:8:3,5:3:108:5:171:-13.3172,0,-7.66693	0/0:342:340,2:340:12040:2:72:0,-96.1155,-1076.62	0/1:142:72,69:72:2572:69:2455:-178.4,0,-188.925	0/1:134:58,76:58:2048:76:2614:-195.167,0,-144.251	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:171:170,0:170:6035:0:0:0,-51.1751,-542.897	0/0:83:83,0:83:2931:0:0:0,-24.9855,-264.024	0/0:195:194,1:194:6895:1:36:0,-55.1026,-617.026	0/0:150:150,0:150:5263:0:0:0,-45.1545,-473.808	0/1:107:48,58:48:1715:58:1990:-147.101,0,-122.366	0/0:99:99,0:99:3526:0:0:0,-29.802,-317.55	0/1:160:84,76:84:3001:76:2714:-196.339,0,-222.155	0/0:173:173,0:173:6162:0:0:0,-52.0782,-554.677	0/0:104:104,0:104:3694:0:0:0,-31.3071,-332.664	0/0:189:188,1:188:6681:1:36:0,-53.2964,-597.773	0/0:216:216,0:216:7686:0:0:0,-65.0225,-691.776	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0812	0/0:225:225,0:225:7982:0:0:0,-67.7317,-718.409	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6803	0/1:163:76,87:76:2674:87:3064:-226.922,0,-191.836	0/1:37:18,19:18:644:19:650:-47.6808,0,-47.1525	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:103:100,3:100:3559:3:104:0,-21.3033,-310.817	0/1:165:76,89:76:2687:89:3064:-226.321,0,-192.403	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:149:149,0:149:5274:0:0:0,-44.8535,-474.799	0/1:247:131,116:131:4654:116:4017:-287.365,0,-344.67	0/0:138:137,1:137:4858:1:36:0,-37.9439,-433.777	0/0:98:98,0:98:3477:0:0:0,-29.5009,-313.142	0/1:178:96,82:96:3405:82:2857:-203.785,0,-253.082	0/0:142:142,0:142:5057:0:0:0,-42.7463,-455.276	0/0:80:80,0:80:2819:0:0:0,-24.0824,-253.949	0/0:144:144,0:144:5114:0:0:0,-43.3483,-460.406	0/1:128:67,61:67:2352:61:2096:-150.373,0,-173.404	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/1:70:32,38:32:1140:38:1335:-99.377,0,-81.8371	0/0:250:250,0:250:8885:0:0:0,-75.2575,-799.639	0/0:226:226,0:226:8016:0:0:0,-68.0328,-721.466	0/0:129:129,0:129:4607:0:0:0,-38.8329,-414.605	0/0:178:175,3:175:6184:3:99:0,-44.3468,-547.426	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/0:161:158,3:158:5600:3:108:0,-38.3907,-494.051	0/1:164:99,65:99:3515:65:2267:-154.922,0,-267.19	0/1:323:168,155:168:5943:155:5397:-388.635,0,-437.751	0/0:193:193,0:193:6901:0:0:0,-58.0988,-621.071	0/0:95:94,0:94:3310:0:0:0,-28.2968,-297.908	0/1:159:76,83:76:2664:83:2829:-206.985,0,-192.14	0/1:235:116,119:116:4105:119:4075:-296.204,0,-298.896	0/1:74:46,28:46:1631:28:982:-66.4155,0,-124.802	0/0:123:123,0:123:4279:0:0:0,-37.0267,-385.29	0/0:126:126,0:126:4435:0:0:0,-37.9298,-399.323	0/0:81:81,0:81:2831:0:0:0,-24.3834,-255.027	0/1:161:86,75:86:3055:75:2638:-189.2,0,-226.715	0/1:120:45,75:45:1588:75:2577:-196.054,0,-107.084	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.296	0/0:244:244,0:244:8610:0:0:0,-73.4513,-774.902
chr02	2558304	.	C	T	36497.8	PASS	AB=0.465175;ABP=53.3747;AC=32;AF=0.170213;AN=188;AO=2236;CIGAR=1X;DP=12235;DPB=12235;DPRA=1.25771;EPP=4858.42;EPPR=21700.4;GTI=0;LEN=1;MEANALT=1.1;MQM=59.6118;MQMR=59.9347;NS=94;NUMALT=1;ODDS=3.4033;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79841;QR=357129;RO=9992;RPL=0;RPP=4858.42;RPPR=21700.4;RPR=2236;RUN=1;SAF=2236;SAP=4858.42;SAR=0;SRF=9992;SRP=21700.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:181:181,0:181:6492:0:0:0,-54.4864,-584.356	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.187	0/1:236:124,112:124:4408:112:3989:-288.151,0,-325.85	0/1:102:58,44:58:2065:44:1568:-110.698,0,-155.414	0/1:54:29,25:29:1040:25:892:-64.3277,0,-77.6587	0/0:111:111,0:111:3939:0:0:0,-33.4143,-354.703	0/0:238:238,0:238:8524:0:0:0,-71.6451,-767.147	0/0:144:144,0:144:5155:0:0:0,-43.3483,-464.09	0/0:177:176,0:176:6304:0:0:0,-52.9813,-567.239	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.363	0/0:85:83,1:83:2968:1:36:0,-22.0479,-263.755	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.306	0/1:73:32,41:32:1135:41:1476:-111.128,0,-80.4829	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/1:61:36,25:36:1287:25:900:-62.9582,0,-97.77	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.969	0/1:71:31,40:31:1103:40:1440:-108.477,0,-78.2067	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/1:225:113,112:113:4040:112:3997:-292.041,0,-296.056	0/1:831:418,412:418:14940:412:14679:-1070.22,0,-1093.76	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.717	0/0:157:156,0:156:5576:0:0:0,-46.9607,-501.759	0/1:91:59,32:59:2120:32:1117:-73.3255,0,-163.673	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.944	0/0:568:568,0:568:20304:0:0:0,-170.985,-1826.37	0/0:270:269,0:269:9604:0:0:0,-80.9771,-863.7	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:371:371,0:371:13237:0:0:0,-111.682,-1191.13	0/0:165:165,0:165:5892:0:0:0,-49.6699,-530.386	0/1:215:125,90:125:4449:90:3223:-225.476,0,-335.86	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:256:256,0:256:9159:0:0:0,-77.0637,-824.253	0/1:313:180,133:180:6425:133:4732:-331.796,0,-483.48	0/1:65:35,30:35:1256:30:1080:-77.9417,0,-93.7783	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:193:193,0:193:6888:0:0:0,-58.0988,-619.881	0/0:38:38,0:38:1342:0:0:0,-11.4391,-121.079	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.351	0/0:144:144,0:144:5167:0:0:0,-43.3483,-465.168	0/1:84:44,40:44:1558:40:1440:-104.609,0,-115.224	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.773	0/1:172:102,70:102:3651:70:2505:-173.755,0,-277.003	0/0:158:157,1:157:5545:1:36:0,-43.9645,-495.578	0/0:208:207,1:207:7420:1:36:0,-59.016,-664.244	0/0:198:198,0:198:7039:0:0:0,-59.6039,-633.458	0/0:240:240,0:240:8560:0:0:0,-72.2472,-770.399	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:116:116,0:116:4176:0:0:0,-34.9195,-376.002	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:153:71,82:71:2521:82:2913:-216.317,0,-181.083	0/1:69:40,29:40:1419:29:1040:-73.1433,0,-107.236	0/1:18:7,11:7:252:11:392:-30.1997,0,-17.6104	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:118:118,0:118:4224:0:0:0,-35.5215,-380.295	0/1:130:62,68:62:2220:68:2433:-180.087,0,-160.931	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:281:281,0:281:10052:0:0:0,-84.5894,-904.615	0/1:254:156,98:156:5578:98:3471:-235.857,0,-425.662	0/0:105:103,2:103:3684:2:72:0,-24.7714,-324.926	0/0:96:96,0:96:3416:0:0:0,-28.8989,-306.952	0/1:278:162,116:162:5800:116:4156:-290.527,0,-438.427	0/0:132:131,1:131:4696:1:29:0,-37.0122,-420.076	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5205	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.099	0/1:103:50,53:50:1792:53:1895:-139.819,0,-130.556	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:94:94,0:94:3340:0:0:0,-28.2968,-300.817	0/1:79:43,36:43:1548:36:1296:-93.1544,0,-115.832	0/0:200:200,0:200:7168:0:0:0,-60.206,-645.164	0/0:189:188,1:188:6732:1:36:0,-53.2964,-602.354	0/0:116:116,0:116:4142:0:0:0,-34.9195,-372.727	0/0:163:159,4:159:5664:4:144:0,-35.7543,-496.558	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.833	0/1:151:78,72:78:2796:72:2557:-184.821,0,-206.514	0/1:270:165,104:165:5868:104:3703:-252.27,0,-447.045	0/0:162:162,0:162:5816:0:0:0,-48.7669,-523.551	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:199:95,104:95:3399:104:3736:-276.442,0,-246.188	0/1:230:119,111:119:4267:111:3992:-290.219,0,-314.97	0/1:61:27,34:27:964:34:1220:-91.7,0,-68.714	0/0:106:106,0:106:3791:0:0:0,-31.9092,-341.388	0/0:80:79,1:79:2832:1:36:0,-20.4841,-251.52	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:83:43,40:43:1544:40:1434:-104.363,0,-114.268	0/1:95:40,55:40:1427:55:1960:-147.92,0,-100.129	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:135:135,0:135:4828:0:0:0,-40.639,-434.673
chr02	2558412	.	GAG	AAA,AAG	240541	PASS	AB=0.463475,0.534337;ABP=45.3638,40.4398;AC=155,33;AF=0.824468,0.175532;AN=188;AO=9127,1976;CIGAR=1X1M1X,1X2M;DP=11121;DPB=11121.7;DPRA=23.9054,1.09972;EPP=19822,4285.16;EPPR=11.6962;GTI=2;LEN=3,1;MEANALT=1.58065,2.12195;MQM=56.4515,59.3973;MQMR=60;NS=94;NUMALT=2;ODDS=0.39117;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=0;PRO=0;QA=321988,70734;QR=136;RO=4;RPL=9127,1976;RPP=19822,4293.84;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,1;SAP=19822,4285.16;SAR=9127,1975;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:84:0,83,0:0:0:83,0:2952,0:-264.865,-24.9855,0,-264.865,-24.9855,-264.865	1/1:109:0,109,0:0:0:109,0:3871,0:-346.741,-32.8123,0,-346.741,-32.8123,-346.741	1/1:230:0,230,0:0:0:230,0:8166,0:-732.554,-69.2369,0,-732.554,-69.2369,-732.554	1/2:294:0,168,126:0:0:168,126:5896,4501:-845.178,-367.266,-316.693,-478.266,0,-440.336	1/2:85:0,48,37:0:0:48,37:1683,1332:-245.183,-109.04,-94.5902,-136.499,0,-125.36	1/2:68:0,33,35:0:0:33,35:1169,1238:-194.883,-100.965,-91.0308,-94.2694,0,-83.7333	1/1:151:0,150,0:0:0:150,0:5275,0:-473.894,-45.1545,0,-473.894,-45.1545,-473.894	1/1:132:0,132,0:0:0:132,0:4649,0:-416.609,-39.736,0,-416.609,-39.736,-416.609	1/1:147:0,146,0:0:0:146,0:5126,0:-459.89,-43.9504,0,-459.89,-43.9504,-459.89	1/1:98:0,97,0:0:0:97,0:3421,0:-307.135,-29.1999,0,-307.135,-29.1999,-307.135	1/1:92:0,92,0:0:0:92,0:3273,0:-294.447,-27.6948,0,-294.447,-27.6948,-294.447	1/1:135:0,135,0:0:0:135,0:4789,0:-430.044,-40.6391,0,-430.044,-40.6391,-430.044	1/1:92:0,92,0:0:0:92,0:3249,0:-292.073,-27.6948,0,-292.073,-27.6948,-292.073	1/2:83:0,40,43:0:0:40,43:1419,1539:-240.144,-125.831,-113.79,-114.667,0,-101.723	1/1:86:0,86,0:0:0:86,0:3035,0:-273.037,-25.8886,0,-273.037,-25.8886,-273.037	1/2:86:0,37,49:0:0:37,49:1317,1756:-250.512,-143.532,-132.394,-107.336,0,-92.5858	1/1:51:0,51,0:0:0:51,0:1800,0:-161.575,-15.3525,0,-161.575,-15.3525,-161.575	1/2:49:1,24,24:1:36:24,24:860,860:-136.836,-67.1835,-62.8963,-67.0143,0,-62.7271	1/1:58:0,58,0:0:0:58,0:2056,0:-184.973,-17.4597,0,-184.973,-17.4597,-184.973	1/2:324:0,134,188:0:0:134,188:4749,6751:-936.555,-550.513,-510.175,-386.052,0,-329.459	1/2:162:0,84,78:0:0:84,78:2948,2800:-468.026,-228.74,-203.453,-239.641,0,-216.16	1/1:157:0,155,2:0:0:155,2:5492,72:-493.531,-46.6597,0,-487.656,-40.425,-487.054	1/1:160:0,160,0:0:0:160,0:5680,0:-510.858,-48.1648,0,-510.858,-48.1648,-510.858	1/2:92:0,39,53:0:0:39,53:1371,1892:-265.152,-154.319,-142.579,-111.185,0,-95.23	1/1:139:0,139,0:0:0:139,0:4877,0:-438.32,-41.8432,0,-438.32,-41.8432,-438.32	1/1:261:0,261,0:0:0:261,0:9140,0:-821.536,-78.5688,0,-821.536,-78.5688,-821.536	1/1:334:0,333,0:0:0:333,0:11648,0:-1046.37,-100.243,0,-1046.37,-100.243,-1046.37	1/1:43:0,43,0:0:0:43,0:1532,0:-137.962,-12.9443,0,-137.962,-12.9443,-137.962	1/1:298:0,297,1:0:0:297,1:10452,36:-937.58,-89.4059,0,-934.643,-86.1087,-934.342	1/1:153:0,153,0:0:0:153,0:5369,0:-482.003,-46.0576,0,-482.003,-46.0576,-482.003	1/2:148:1,73,74:1:36:73,74:2558,2639:-419.296,-211.629,-192.592,-205.023,0,-185.684	1/1:3:0,3,0:0:0:3,0:108,0:-10.0704,-0.90309,0,-10.0704,-0.90309,-10.0704	1/1:22:0,22,0:0:0:22,0:784,0:-70.7746,-6.62266,0,-70.7746,-6.62266,-70.7746	1/1:5:0,5,0:0:0:5,0:178,0:-16.2481,-1.50515,0,-16.2481,-1.50515,-16.2481	1/1:18:0,18,0:0:0:18,0:626,0:-56.5116,-5.41854,0,-56.5116,-5.41854,-56.5116	1/2:11:0,10,1:0:0:10,1:352,36:-31.1748,-3.29724,-0.286945,-28.2359,0,-27.9349	1/1:238:0,236,1:0:0:236,1:8332,36:-748.492,-71.0431,0,-745.554,-68.1057,-745.253	1/2:172:0,79,93:0:0:79,93:2804,3308:-497.977,-269.914,-246.132,-228.418,0,-200.422	1/2:86:0,36,50:0:0:36,50:1253,1787:-246.815,-146.026,-135.189,-101.139,0,-86.0871	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/1:147:0,147,0:0:0:147,0:5177,0:-464.501,-44.2514,0,-464.501,-44.2514,-464.501	1/1:46:0,45,1:0:0:45,1:1572,36:-141.101,-13.5464,0,-138.164,-10.2491,-137.863	1/1:214:0,213,0:0:0:213,0:7502,0:-672.675,-64.1194,0,-672.675,-64.1194,-672.675	1/1:68:0,68,0:0:0:68,0:2410,0:-217.031,-20.47,0,-217.031,-20.47,-217.031	1/2:80:0,34,46:0:0:34,46:1203,1652:-232.691,-135.016,-124.781,-98.0298,0,-84.1824	1/1:145:0,145,0:0:0:145,0:5093,0:-457.28,-43.6494,0,-457.28,-43.6494,-457.28	1/2:129:0,54,75:0:0:54,75:1940,2677:-376.499,-218.536,-202.281,-158.32,0,-135.743	1/1:189:0,189,0:0:0:189,0:6644,0:-596.773,-56.8947,0,-596.773,-56.8947,-596.773	1/1:130:0,130,0:0:0:130,0:4553,0:-409.421,-39.1339,0,-409.421,-39.1339,-409.421	1/1:195:0,192,3:0:0:192,3:6830,108:-614.035,-57.7978,0,-605.223,-48.6257,-604.32	1/1:164:0,163,0:0:0:163,0:5737,0:-515.333,-49.0679,0,-515.333,-49.0679,-515.333	1/2:10:0,2,8:0:0:2,8:70,288:-29.5496,-23.8568,-23.2547,-6.04458,0,-3.63634	1/1:139:0,139,0:0:0:139,0:4945,0:-442.899,-41.8432,0,-442.899,-41.8432,-442.899	1/1:96:0,96,0:0:0:96,0:3388,0:-304.461,-28.8989,0,-304.461,-28.8989,-304.461	1/1:10:0,10,0:0:0:10,0:360,0:-32.5867,-3.0103,0,-32.5867,-3.0103,-32.5867	1/2:180:0,102,78:0:0:102,78:3606,2804:-520.432,-228.897,-198.192,-291.89,0,-268.41	1/2:81:0,37,44:0:0:37,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chr02	2570942	.	A	G	28791.1	PASS	AB=0.429877;ABP=138.531;AC=35;AF=0.18617;AN=188;AO=1612;CIGAR=1X;DP=10440;DPB=10440;DPRA=1.06054;EPP=2953.63;EPPR=19155.4;GTI=2;LEN=1;MEANALT=1.02632;MQM=59.7996;MQMR=59.9806;NS=94;NUMALT=1;ODDS=2.74997;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57698;QR=311795;RO=8824;RPL=66;RPP=2953.63;RPPR=19155.4;RPR=1546;RUN=1;SAF=1612;SAP=3503.42;SAR=0;SRF=8822;SRP=19146.7;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:150:150,0:150:5257:0:0:0,-45.1545,-473.265	0/0:155:152,3:152:5335:3:108:0,-36.5845,-470.213	0/1:141:121,20:121:4285:20:716:-22.3225,0,-343.383	0/1:44:36,8:36:1265:8:288:-13.0212,0,-100.905	0/1:59:41,18:41:1448:18:648:-40.8911,0,-112.855	0/0:172:172,0:172:6137:0:0:0,-51.7772,-552.429	0/0:183:183,0:183:6496:0:0:0,-55.0885,-584.732	0/0:133:132,1:132:4643:1:36:0,-36.4387,-414.42	0/0:125:125,0:125:4449:0:0:0,-37.6287,-400.582	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/0:111:111,0:111:3937:0:0:0,-33.4143,-354.524	0/1:60:23,36:23:812:36:1292:-98.4632,0,-55.2699	0/0:86:86,0:86:3041:0:0:0,-25.8886,-273.921	0/1:58:30,28:30:1051:28:1008:-73.566,0,-77.4399	0/0:61:61,0:61:2153:0:0:0,-18.3628,-194.036	0/1:70:30,40:30:1030:40:1415:-106.568,0,-71.9322	0/0:57:56,1:56:1960:1:36:0,-13.5604,-173.075	0/1:161:108,53:108:3841:53:1904:-123.172,0,-297.421	0/1:95:70,25:70:2488:25:890:-51.8213,0,-195.576	0/0:122:122,0:122:4284:0:0:0,-36.7257,-385.739	0/0:78:78,0:78:2746:0:0:0,-23.4803,-247.381	0/1:115:92,23:92:3265:23:798:-37.5156,0,-259.452	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:357:354,3:354:12537:3:108:0,-97.3925,-1118.09	0/0:313:312,0:312:11053:0:0:0,-93.9214,-994.312	0/0:52:52,0:52:1811:0:0:0,-15.6536,-163.255	0/0:255:255,0:255:9061:0:0:0,-76.7626,-815.47	0/0:159:159,0:159:5607:0:0:0,-47.8638,-504.757	0/1:82:67,15:67:2339:15:521:-22.5319,0,-186.082	0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7716	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2943	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	1/1:118:5,113:5:165:113:4044:-348.73,-20.3479,0	0/0:251:250,0:250:8842:0:0:0,-75.2575,-795.416	0/1:62:55,7:55:1953:7:252:-4.3651,0,-157.38	0/1:250:64,186:64:2259:186:6680:-525.531,0,-128.316	0/1:44:5,39:5:180:39:1385:-111.702,0,-3.30674	0/0:189:189,0:189:6641:0:0:0,-56.8947,-597.776	0/0:70:70,0:70:2467:0:0:0,-21.0721,-222.285	0/0:78:78,0:78:2742:0:0:0,-23.4803,-247.022	0/0:113:113,0:113:3972:0:0:0,-34.0164,-357.676	0/1:90:38,52:38:1345:52:1868:-141.307,0,-94.2555	0/0:158:158,0:158:5578:0:0:0,-47.5627,-502.149	0/1:98:87,11:87:3054:11:392:-6.11637,0,-245.589	0/0:166:166,0:166:5851:0:0:0,-49.971,-526.708	0/0:170:170,0:170:6027:0:0:0,-51.1751,-542.536	0/0:133:133,0:133:4740:0:0:0,-40.037,-426.761	0/0:230:230,0:230:8144:0:0:0,-69.2369,-732.981	1/1:35:2,33:2:72:33:1180:-99.6713,-3.69933,0	0/0:160:160,0:160:5681:0:0:0,-48.1648,-511.413	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.374	0/0:23:23,0:23:794:0:0:0,-6.92369,-71.7733	0/1:108:89,19:89:3140:19:674:-28.4759,0,-250.298	0/1:42:32,10:32:1129:10:360:-20.101,0,-89.2731	1/1:99:7,92:7:240:92:3304:-275.639,-7.86731,0	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/0:86:86,0:86:3048:0:0:0,-25.8886,-274.549	0/1:111:58,53:58:2056:53:1908:-138.583,0,-151.897	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6444	0/0:236:236,0:236:8329:0:0:0,-71.0431,-749.6	0/1:168:128,40:128:4541:40:1422:-77.6742,0,-358.263	0/0:61:61,0:61:2157:0:0:0,-18.3628,-194.396	0/0:95:95,0:95:3340:0:0:0,-28.5978,-300.815	0/1:157:108,49:108:3766:49:1752:-110.702,0,-291.881	0/0:122:121,1:121:4237:1:36:0,-33.1771,-377.961	0/0:19:19,0:19:664:0:0:0,-5.71957,-60.0845	0/0:113:113,0:113:4003:0:0:0,-34.0164,-360.463	0/1:103:36,67:36:1257:67:2408:-185.969,0,-82.4241	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.484	0/0:122:122,0:122:4314:0:0:0,-36.7257,-388.438	0/1:53:39,14:39:1392:14:500:-29.3773,0,-109.624	0/0:193:193,0:193:6851:0:0:0,-58.0988,-615.643	0/0:203:203,0:203:7130:0:0:0,-61.1091,-641.755	0/0:120:119,1:119:4176:1:36:0,-32.5253,-372.409	0/0:152:152,0:152:5386:0:0:0,-45.7566,-484.874	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:125:125,0:125:4464:0:0:0,-37.6287,-401.931	0/1:68:54,14:54:1936:14:504:-25.2281,0,-154.046	0/1:174:149,25:149:5275:25:892:-28.2205,0,-422.508	0/0:115:115,0:115:4048:0:0:0,-34.6184,-364.507	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.508	0/1:126:48,78:48:1696:78:2792:-213.591,0,-114.996	0/1:152:83,69:83:2956:69:2484:-178.039,0,-220.518	0/1:43:30,13:30:1038:13:460:-28.7911,0,-80.7808	0/0:90:89,0:89:3161:0:0:0,-26.7917,-284.355	0/0:84:84,0:84:2956:0:0:0,-25.2865,-266.277	0/0:21:21,0:21:710:0:0:0,-6.32163,-64.2121	0/1:265:53,212:53:1868:212:7573:-601.776,0,-88.6237	0/1:174:34,140:34:1163:140:5024:-398.651,0,-52.5882	0/0:106:106,0:106:3715:0:0:0,-31.9092,-334.553	0/0:120:120,0:120:4264:0:0:0,-36.1236,-383.942
chr02	2578712	.	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chr02	2578814	.	C	T	86830.2	PASS	AB=0.485732;ABP=8.71109;AC=155;AF=0.824468;AN=188;AO=6994;CIGAR=1X;DP=8667;DPB=8667;DPRA=46.586;EPP=15190.3;EPPR=3622.86;GTI=2;LEN=1;MEANALT=1.02151;MQM=26.0164;MQMR=58.8504;NS=94;NUMALT=1;ODDS=1.23234;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250507;QR=59420;RO=1671;RPL=2;RPP=15172.9;RPPR=3622.86;RPR=6992;RUN=1;SAF=2;SAP=15172.9;SAR=6992;SRF=0;SRP=3631.54;SRR=1671;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:252:-14.2391,-2.10721,0	1/1:109:0,109:0:0:109:3912:-204.933,-32.8123,0	1/1:95:0,95:0:0:95:3400:-178.348,-28.5979,0	0/1:316:140,175:140:5009:175:6276:-335.015,0,-355.826	0/1:21:8,13:8:288:13:460:-23.3742,0,-19.9458	0/1:34:18,16:18:644:16:576:-20.0205,0,-47.3739	1/1:46:0,46:0:0:46:1652:-112.694,-13.8474,0	1/1:127:0,127:0:0:127:4560:-238.565,-38.2308,0	1/1:24:0,24:0:0:24:855:-45.1157,-7.22472,0	1/1:114:0,114:0:0:114:4100:-279.961,-34.3174,0	1/1:116:0,116:0:0:116:4158:-282.991,-34.9195,0	1/1:82:0,82:0:0:82:2939:-154.691,-24.6845,0	1/1:90:1,89:1:36:89:3175:-164.278,-24.1899,0	0/1:171:94,77:94:3339:77:2759:-124.613,0,-249.186	1/1:66:0,66:0:0:66:2356:-161.829,-19.868,0	0/1:81:42,39:42:1504:39:1396:-65.1562,0,-111.259	1/1:140:0,140:0:0:140:5023:-263.008,-42.1442,0	0/1:71:33,38:33:1175:38:1343:-49.9668,0,-84.4386	1/1:36:0,36:0:0:36:1262:-67.5932,-10.8371,0	0/1:160:81,79:81:2899:79:2835:-146.447,0,-212.797	0/1:111:71,40:71:2527:40:1416:-56.1122,0,-194.218	1/1:86:0,86:0:0:86:3088:-221.273,-25.8886,0	1/1:13:0,13:0:0:13:468:-31.6975,-3.91339,0	0/1:91:42,49:42:1500:49:1740:-84.3222,0,-106.951	1/1:22:0,22:0:0:22:784:-50.3902,-6.62266,0	1/1:304:0,304:0:0:304:10896:-774.749,-91.5131,0	1/1:133:0,133:0:0:133:4771:-303.437,-40.037,0	1/1:51:0,51:0:0:51:1828:-116.748,-15.3525,0	1/1:254:0,254:0:0:254:9076:-647.827,-76.4616,0	1/1:182:0,182:0:0:182:6536:-414.832,-54.7875,0	0/1:100:71,29:71:2540:29:1032:-39.87,0,-198.736	1/1:5:0,5:0:0:5:180:-11.77,-1.50515,0	1/1:8:0,8:0:0:8:284:-18.1968,-2.40824,0	1/1:3:0,3:0:0:3:104:-5.82421,-0.90309,0	1/1:9:0,9:0:0:9:320:-17.0922,-2.70927,0	0/1:3:1,2:1:36:2:72:-3.06142,0,-2.69347	1/1:193:0,193:0:0:193:6897:-491.449,-58.0988,0	0/1:160:90,70:90:3190:70:2512:-111.745,0,-239.122	0/1:90:42,48:42:1499:48:1724:-63.2388,0,-108.049	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:164:2,162:2:72:162:5796:-363.886,-42.5322,0	1/1:36:0,36:0:0:36:1296:-82.3927,-10.8371,0	1/1:85:0,85:0:0:85:3052:-193.94,-25.5876,0	1/1:55:0,55:0:0:55:1976:-135.505,-16.5567,0	0/1:68:34,34:34:1200:34:1220:-62.0443,0,-87.813	1/1:16:0,16:0:0:16:576:-41.287,-4.81648,0	0/1:103:60,43:60:2113:43:1533:-49.6954,0,-158.708	1/1:117:1,116:1:36:116:4144:-280.602,-31.766,0	1/1:88:0,88:0:0:88:3152:-215.622,-26.4906,0	1/1:156:3,153:3:108:153:5492:-365.943,-37.3505,0	1/1:75:0,75:0:0:75:2683:-191.542,-22.5773,0	0/1:9:5,4:5:165:4:144:-7.41468,0,-12.4643	1/1:119:0,119:0:0:119:4264:-223.681,-35.8226,0	1/1:37:0,37:0:0:37:1332:-92.7612,-11.1381,0	1/1:27:0,27:0:0:27:964:-50.8774,-8.12781,0	0/1:143:82,61:82:2881:61:2175:-96.9137,0,-216.09	0/1:23:20,3:20:716:3:108:-0.737676,0,-57.8316	0/1:11:2,9:2:72:9:324:-18.936,0,-3.52539	1/1:15:0,15:0:0:15:540:-39.3266,-4.51545,0	1/1:171:0,171:0:0:171:6135:-392.541,-51.4761,0	0/1:184:78,106:78:2775:106:3812:-204.069,0,-194.488	1/1:7:0,7:0:0:7:248:-17.4371,-2.10721,0	1/1:226:0,226:0:0:226:8088:-578.137,-68.0328,0	0/1:125:50,75:50:1779:75:2668:-143.233,0,-122.757	1/1:91:5,86:5:180:86:3076:-180.118,-10.8417,0	1/1:83:0,83:0:0:83:2965:-202.871,-24.9855,0	0/1:125:76,49:76:2702:49:1752:-82.7636,0,-205.507	1/1:69:0,69:0:0:69:2476:-167.664,-20.7711,0	1/1:61:0,61:0:0:61:2174:-139.532,-18.3628,0	1/1:74:0,74:0:0:74:2652:-139.122,-22.2762,0	0/1:160:68,91:68:2413:91:3253:-180.032,0,-169.288	1/1:39:0,39:0:0:39:1400:-95.9134,-11.7402,0	1/1:92:0,92:0:0:92:3308:-172.96,-27.6948,0	0/1:58:28,30:28:996:30:1068:-39.0338,0,-72.3839	1/1:105:0,105:0:0:105:3768:-241.035,-31.6082,0	1/1:154:0,154:0:0:154:5525:-375.801,-46.3586,0	1/1:56:0,56:0:0:56:2000:-105.302,-16.8577,0	1/1:136:0,136:0:0:136:4872:-255.501,-40.9401,0	1/1:5:0,5:0:0:5:180:-9.59829,-1.50515,0	1/1:92:0,92:0:0:92:3304:-209.922,-27.6948,0	0/1:110:57,53:57:2044:53:1896:-66.5726,0,-150.993	0/1:158:73,85:73:2585:85:3052:-161.563,0,-185.317	1/1:148:0,148:0:0:148:5308:-362.894,-44.5524,0	1/1:102:1,101:1:36:101:3615:-244.447,-27.2506,0	0/1:92:51,41:51:1811:41:1472:-72.4846,0,-135.558	0/1:148:81,67:81:2862:67:2382:-118.394,0,-212.605	0/1:45:24,21:24:852:21:751:-25.9906,0,-63.4121	1/1:93:0,93:0:0:93:3344:-174.838,-27.9958,0	1/1:54:0,54:0:0:54:1940:-101.599,-16.2556,0	1/1:81:0,81:0:0:81:2908:-186.008,-24.3834,0	0/1:182:82,100:82:2904:100:3579:-173.87,0,-206.737	0/1:71:52,19:52:1860:19:680:-25.6157,0,-146.267	1/1:100:0,100:0:0:100:3584:-245.14,-30.103,0	1/1:97:0,97:0:0:97:3484:-236.955,-29.1999,0
chr02	2639988	.	G	A	11906.2	PASS	AB=0.453892;ABP=33.8478;AC=33;AF=0.175532;AN=188;AO=768;CIGAR=1X;DP=5470;DPB=5470;DPRA=0.999648;EPP=1670.7;EPPR=10211.1;GTI=3;LEN=1;MEANALT=1.02564;MQM=59.9844;MQMR=59.9879;NS=94;NUMALT=1;ODDS=0.756191;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27307;QR=167575;RO=4701;RPL=0;RPP=1670.7;RPPR=10211.1;RPR=768;RUN=1;SAF=768;SAP=1670.7;SAR=0;SRF=4701;SRP=10211.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.821	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/1:87:41,46:41:1464:46:1625:-120.346,0,-105.866	0/1:27:21,6:21:756:6:216:-11.6627,0,-60.2394	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/0:114:112,1:112:3997:1:36:0,-30.7779,-356.321	0/0:131:130,1:130:4626:1:36:0,-35.8367,-412.904	0/0:81:81,0:81:2877:0:0:0,-24.3834,-259.166	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:66:65,1:65:2316:1:36:0,-16.2697,-205.103	0/0:122:122,0:122:4353:0:0:0,-36.7257,-391.944	0/0:93:93,0:93:3323:0:0:0,-27.9958,-299.288	0/1:64:32,32:32:1144:32:1144:-84.0036,0,-84.0036	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:74:43,31:43:1544:31:1100:-77.0341,0,-116.977	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:34:18,16:18:644:16:572:-41.5784,0,-48.0556	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:88:42,46:42:1504:46:1632:-120.678,0,-109.164	0/1:78:60,18:60:2133:18:644:-34.8103,0,-168.756	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.718	0/0:46:46,0:46:1599:0:0:0,-13.8474,-144.193	0/1:43:21,22:21:748:22:792:-58.6614,0,-54.701	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/0:127:127,0:127:4517:0:0:0,-38.2308,-406.696	0/0:91:91,0:91:3241:0:0:0,-27.3937,-291.911	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:116:116,0:116:4136:0:0:0,-34.9195,-372.423	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.265	0/1:70:30,40:30:1076:40:1416:-106.665,0,-76.0808	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:1,4:1:36:4:125:-10.0535,0,-2.09312	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:148:148,0:148:5296:0:0:0,-44.5524,-476.775	0/1:33:23,10:23:828:10:360:-22.8103,0,-64.9101	0/1:54:25,29:25:892:29:1039:-77.5687,0,-64.3441	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:114:114,0:114:4023:0:0:0,-34.3174,-362.252	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:47:24,23:24:864:23:820:-59.9741,0,-63.9342	0/0:61:61,0:61:2150:0:0:0,-18.3628,-193.764	0/1:34:17,17:17:585:17:600:-44.0942,0,-42.7369	0/0:94:93,1:93:3291:1:36:0,-24.6985,-292.808	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:55:25,30:25:900:30:1060:-79.1546,0,-64.7644	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:85:85,0:85:3025:0:0:0,-25.5875,-272.48	0/1:75:42,33:42:1485:33:1180:-83.9308,0,-111.365	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:55:55,0:55:1946:0:0:0,-16.5566,-175.412	0/1:71:35,36:35:1252:36:1288:-94.8505,0,-91.6119	0/0:53:48,5:48:1720:5:161:0,-1.14803,-140.279	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:94:54,40:54:1927:40:1412:-99.0796,0,-145.409	0/0:141:140,1:140:4981:1:36:0,-38.847,-444.839	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:46:24,22:24:852:22:792:-57.7583,0,-63.1497	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/1:48:27,21:27:949:21:741:-52.5622,0,-71.2733	0/0:181:181,0:181:6454:0:0:0,-54.4864,-580.946	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:107:107,0:107:3789:0:0:0,-32.2102,-341.211	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:49:35,14:35:1252:14:492:-29.8619,0,-98.2346	0/1:110:61,49:61:2173:49:1744:-124.131,0,-162.721	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/1:38:22,16:22:788:16:568:-40.0127,0,-59.8057	0/1:96:59,37:59:2112:37:1327:-90.8334,0,-161.45	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	0/0:75:75,0:75:2667:0:0:0,-22.5772,-240.276	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:121:67,54:67:2396:54:1921:-136.741,0,-179.473	0/1:53:15,38:15:536:38:1356:-106.386,0,-32.6202	0/0:39:39,0:39:1381:0:0:0,-11.7402,-124.587	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474
chr02	2640050	.	TT	AG,TG	127653	PASS	AB=0.496663,0.50286;ABP=3.21316,3.15934;AC=154,32;AF=0.827957,0.172043;AN=186;AO=4739,1064;CIGAR=2X,1M1X;DP=5809;DPB=5809;DPRA=63.1304,1.27406;EPP=10276.3,2101.41;EPPR=0;GTI=1;LEN=2,1;MEANALT=1.45652,2;MQM=57.1775,59.7152;MQMR=0;NS=93;NUMALT=2;ODDS=0.582168;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=169059,38050;QR=0;RO=0;RPL=4737,1039;RPP=10276.3,2101.41;RPPR=0;RPR=2,25;RUN=1,1;SAF=0,0;SAP=10293.6,2313.46;SAR=4739,1064;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14,0:0:0:14,0:500,0:-45.1003,-4.21442,0,-45.1003,-4.21442,-45.1003	1/1:76:0,76,0:0:0:76,0:2726,0:-244.171,-22.8783,0,-244.171,-22.8783,-244.171	1/1:58:0,58,0:0:0:58,0:2068,0:-184.934,-17.4597,0,-184.934,-17.4597,-184.934	1/2:157:0,76,81:0:0:76,81:2723,2888:-455.203,-235.727,-212.849,-219.832,0,-195.448	1/2:27:0,15,12:0:0:15,12:540,423:-78.6314,-34.7923,-30.2768,-44.1941,0,-40.5818	1/2:42:0,22,20:0:0:22,20:792,720:-122.894,-59.1082,-52.4855,-64.1441,0,-58.1235	1/1:79:0,79,0:0:0:79,0:2776,0:-249.274,-23.7814,0,-249.274,-23.7814,-249.274	1/1:109:0,109,0:0:0:109,0:3877,0:-346.645,-32.8123,0,-346.645,-32.8123,-346.645	1/1:61:0,61,0:0:0:61,0:2172,0:-195.189,-18.3628,0,-195.189,-18.3628,-195.189	1/1:87:0,86,0:0:0:86,0:3075,0:-275.627,-25.8886,0,-275.627,-25.8886,-275.627	1/1:50:0,50,0:0:0:50,0:1755,0:-157.298,-15.0515,0,-157.298,-15.0515,-157.298	1/1:62:0,62,0:0:0:62,0:2223,0:-199.184,-18.6639,0,-199.184,-18.6639,-199.184	1/1:57:0,57,0:0:0:57,0:2037,0:-182.722,-17.1587,0,-182.722,-17.1587,-182.722	1/2:47:0,23,24:0:0:23,24:828,864:-137.642,-70.8523,-63.9286,-67.1474,0,-59.9227	1/1:69:0,68,0:0:0:68,0:2426,0:-218.06,-20.47,0,-218.06,-20.47,-218.06	1/2:42:0,20,22:0:0:20,22:709,792:-122.631,-64.983,-58.9624,-58.0047,0,-51.382	1/1:56:0,56,0:0:0:56,0:1994,0:-177.753,-16.8577,0,-177.753,-16.8577,-177.753	1/2:73:0,34,39:0:0:34,39:1222,1400:-213.629,-114.559,-104.324,-99.4282,0,-87.688	1/1:34:0,34,0:0:0:34,0:1214,0:-108.958,-10.235,0,-108.958,-10.235,-108.958	1/2:118:0,56,62:0:0:56,62:2005,2221:-344.975,-181.486,-164.628,-163.847,0,-145.183	1/2:59:0,30,29:0:0:30,29:1076,1040:-172.546,-84.8664,-75.8355,-88.0372,0,-79.3074	1/1:35:0,35,0:0:0:35,0:1241,0:-111.863,-10.5361,0,-111.863,-10.5361,-111.863	1/1:64:0,64,0:0:0:64,0:2294,0:-206.66,-19.2659,0,-206.66,-19.2659,-206.66	1/2:85:0,39,46:0:0:39,46:1395,1652:-247.296,-135.121,-123.381,-112.531,0,-98.6834	1/1:26:0,26,0:0:0:26,0:934,0:-84.2405,-7.82678,0,-84.2405,-7.82678,-84.2405	1/1:158:0,157,0:0:0:157,0:5607,0:-501.639,-47.2617,0,-501.639,-47.2617,-501.639	1/1:96:0,96,0:0:0:96,0:3376,0:-302.64,-28.8989,0,-302.64,-28.8989,-302.64	1/1:29:0,29,0:0:0:29,0:1031,0:-92.9076,-8.72987,0,-92.9076,-8.72987,-92.9076	1/1:131:0,131,0:0:0:131,0:4682,0:-420.346,-39.4349,0,-420.346,-39.4349,-420.346	1/1:63:0,63,0:0:0:63,0:2245,0:-201.625,-18.9649,0,-201.625,-18.9649,-201.625	1/2:102:0,56,46:0:0:56,46:1984,1648:-295.274,-134.759,-117.901,-160.87,0,-147.023	1/1:8:0,8,0:0:0:8,0:288,0:-25.4224,-2.40824,0,-25.4224,-2.40824,-25.4224	1/1:6:0,6,0:0:0:6,0:214,0:-19.5258,-1.80618,0,-19.5258,-1.80618,-19.5258	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	.:.:.:.:.:.:.:.	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:98:0,98,0:0:0:98,0:3491,0:-312.77,-29.5009,0,-312.77,-29.5009,-312.77	1/2:73:0,32,41:0:0:32,41:1139,1456:-210.943,-118.852,-109.219,-92.4453,0,-80.1031	1/2:48:0,25,23:0:0:25,23:900,820:-140.383,-67.1988,-59.6731,-73.5416,0,-66.6179	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:116:0,116,0:0:0:116,0:4166,0:-373.338,-34.9195,0,-373.338,-34.9195,-373.338	1/1:20:0,20,0:0:0:20,0:720,0:-64.8237,-6.0206,0,-64.8237,-6.0206,-64.8237	1/1:83:0,83,0:0:0:83,0:2957,0:-265.496,-24.9855,0,-265.496,-24.9855,-265.496	1/1:66:0,66,0:0:0:66,0:2344,0:-209.671,-19.868,0,-209.671,-19.868,-209.671	1/2:70:0,33,37:0:0:33,37:1159,1332:-203.211,-109.016,-99.0819,-94.5504,0,-83.4123	1/1:39:0,39,0:0:0:39,0:1402,0:-125.817,-11.7402,0,-125.817,-11.7402,-125.817	1/2:52:0,20,32:0:0:20,32:696,1148:-150.163,-93.9087,-87.8881,-56.6054,0,-46.9724	1/1:148:0,147,1:0:0:147,1:5221,36:-469.298,-44.2514,0,-466.36,-40.9542,-466.059	1/1:59:0,59,0:0:0:59,0:2106,0:-189.119,-17.7608,0,-189.119,-17.7608,-189.119	1/1:169:0,169,0:0:0:169,0:6028,0:-538.688,-50.8741,0,-538.688,-50.8741,-538.688	1/1:79:0,79,0:0:0:79,0:2831,0:-253.746,-23.7814,0,-253.746,-23.7814,-253.746	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:41:0,41,0:0:0:41,0:1474,0:-132.491,-12.3422,0,-132.491,-12.3422,-132.491	1/1:48:0,48,0:0:0:48,0:1728,0:-155.499,-14.4494,0,-155.499,-14.4494,-155.499	1/1:11:0,11,0:0:0:11,0:381,0:-34.5683,-3.31133,0,-34.5683,-3.31133,-34.5683	1/2:70:0,44,25:0:0:44,25:1569,881:-197.93,-71.7214,-58.4761,-126.201,0,-118.675	1/2:38:0,20,18:0:0:20,18:720,648:-111.791,-53.2048,-47.1842,-58.9454,0,-53.5269	1/2:8:0,4,4:0:0:4,4:140,144:-23.4947,-12.1091,-10.905,-11.7405,0,-10.5363	1/1:8:0,8,0:0:0:8,0:288,0:-26.0977,-2.40824,0,-26.0977,-2.4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chr02	2697474	.	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chr02	2697483	.	C	T	28053.9	PASS	AB=0.509843;ABP=6.00249;AC=34;AF=0.180851;AN=188;AO=1831;CIGAR=1X;DP=11454;DPB=11454;DPRA=1.04846;EPP=3978.98;EPPR=20896.9;GTI=2;LEN=1;MEANALT=1.025;MQM=39.7253;MQMR=47.2035;NS=94;NUMALT=1;ODDS=0.108209;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65397;QR=341194;RO=9622;RPL=1831;RPP=3978.98;RPPR=20896.9;RPR=0;RUN=1;SAF=1831;SAP=3978.98;SAR=0;SRF=9622;SRP=20896.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:111:111,0:111:3865:0:0:0,-33.4143,-344.9	0/0:115:115,0:115:4102:0:0:0,-34.6184,-365.959	0/0:280:280,0:280:9992:0:0:0,-84.2884,-891.026	0/1:266:131,135:131:4654:135:4844:-338.874,0,-336.086	0/1:116:59,57:59:2116:57:2048:-141.253,0,-154.424	0/1:37:16,21:16:567:21:752:-52.7281,0,-39.9552	0/0:105:105,0:105:3730:0:0:0,-31.6081,-332.865	0/0:176:176,0:176:6250:0:0:0,-52.9813,-558.838	0/0:143:143,0:143:5019:0:0:0,-43.0473,-446.713	0/0:107:107,0:107:3790:0:0:0,-32.2102,-337.738	0/0:47:47,0:47:1680:0:0:0,-14.1484,-150.332	0/0:108:108,0:108:3808:0:0:0,-32.5112,-340.367	0/0:62:62,0:62:2192:0:0:0,-18.6639,-195.771	0/1:54:35,19:35:1252:19:684:-42.3706,0,-95.7808	0/0:82:82,0:82:2936:0:0:0,-24.6845,-262.268	0/1:51:24,27:24:852:27:951:-67.3665,0,-61.256	0/0:39:39,0:39:1378:0:0:0,-11.7402,-123.211	0/1:37:20,17:20:711:17:603:-40.4106,0,-52.8398	0/0:25:25,0:25:866:0:0:0,-7.52575,-77.8479	0/1:290:155,134:155:5502:134:4773:-325.492,0,-403.896	0/1:164:88,76:88:3125:76:2711:-184.417,0,-229.052	0/0:259:259,0:259:9192:0:0:0,-77.9668,-797.138	0/0:168:167,1:167:5902:1:36:0,-47.1185,-523.207	0/1:99:48,51:48:1705:51:1813:-125.524,0,-122.42	0/0:128:128,0:128:4549:0:0:0,-38.5318,-406.562	0/0:325:325,0:325:11462:0:0:0,-97.8347,-995.905	0/0:343:343,0:343:12192:0:0:0,-103.253,-1086.7	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.244	0/0:336:336,0:336:11907:0:0:0,-101.146,-1036.38	0/0:190:190,0:190:6743:0:0:0,-57.1957,-601.972	0/1:123:59,64:59:2100:64:2292:-161.984,0,-150.096	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0205	0/0:41:41,0:41:1468:0:0:0,-12.3422,-129.71	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.1289	1/1:3:0,3:0:0:3:108:-9.48528,-0.90309,0	0/1:19:7,12:7:252:12:432:-31.2053,0,-17.1569	0/0:144:144,0:144:5098:0:0:0,-43.3483,-444.126	0/1:211:100,111:100:3516:111:3961:-277.677,0,-249.904	0/1:43:15,28:15:536:28:989:-68.8564,0,-34.7628	0/1:6:3,3:3:108:3:104:-7.56927,0,-8.21437	0/0:265:265,0:265:9396:0:0:0,-79.7729,-836.316	0/0:21:21,0:21:756:0:0:0,-6.32163,-67.9102	0/0:164:164,0:164:5828:0:0:0,-49.3689,-521.336	0/0:45:45,0:45:1590:0:0:0,-13.5463,-142.039	0/1:46:23,23:23:807:23:808:-56.0582,0,-58.7429	0/0:205:205,0:205:7283:0:0:0,-61.7111,-634.299	0/1:191:96,95:96:3427:95:3401:-228.928,0,-249.423	0/0:255:254,1:254:9002:1:36:0,-73.2599,-801.284	0/0:162:162,0:162:5763:0:0:0,-48.7669,-512.633	0/0:101:101,0:101:3589:0:0:0,-30.404,-320.806	0/0:195:195,0:195:6930:0:0:0,-58.7008,-602.461	0/1:17:6,11:6:216:11:396:-29.0204,0,-14.5657	0/0:415:413,2:413:14637:2:72:0,-118.427,-1302.63	0/0:77:77,0:77:2741:0:0:0,-23.1793,-238.494	0/0:22:22,0:22:788:0:0:0,-6.62266,-70.5133	0/1:229:84,145:84:2972:145:5192:-376.234,0,-197.356	0/1:72:37,35:37:1311:35:1239:-86.0502,0,-94.8	0/1:9:5,4:5:180:4:144:-10.3744,0,-13.3019	0/0:15:15,0:15:532:0:0:0,-4.51545,-46.8241	0/0:94:94,0:94:3345:0:0:0,-28.2968,-298.571	0/1:90:48,42:48:1724:42:1499:-102.724,0,-127.131	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6832	0/0:226:226,0:226:8040:0:0:0,-68.0328,-700.104	0/1:215:102,113:102:3612:113:4041:-284.099,0,-258.669	0/0:125:118,7:118:4197:7:252:0,-15.52,-353.247	0/0:93:93,0:93:3287:0:0:0,-27.9958,-294.198	0/1:220:115,105:115:4084:105:3767:-259.921,0,-298.612	0/0:177:176,1:176:6242:1:36:0,-49.8278,-554.083	0/0:29:29,0:29:1024:0:0:0,-8.72987,-91.6106	0/0:86:84,2:84:2958:2:72:0,-19.4521,-258.627	0/1:48:20,28:20:697:28:1008:-74.4318,0,-46.7392	0/0:33:33,0:33:1169:0:0:0,-9.93399,-104.93	0/0:201:201,0:201:7155:0:0:0,-60.507,-638.87	0/1:162:84,78:84:2983:78:2796:-186.478,0,-214.71	0/0:193:193,0:193:6858:0:0:0,-58.0988,-611.89	0/0:239:239,0:239:8491:0:0:0,-71.9462,-758.511	0/0:222:221,1:221:7860:1:36:0,-63.4411,-697.758	0/0:115:115,0:115:4060:0:0:0,-34.6184,-363.436	0/0:17:17,0:17:599:0:0:0,-5.11751,-53.9174	0/0:160:160,0:160:5649:0:0:0,-48.1648,-504.2	0/1:179:75,104:75:2646:104:3691:-256.815,0,-181.597	0/1:251:132,119:132:4692:119:4268:-293.692,0,-344.208	0/0:58:58,0:58:2058:0:0:0,-17.4597,-184.52	0/0:64:64,0:64:2245:0:0:0,-19.2659,-200.693	0/1:54:29,25:29:999:25:900:-61.4804,0,-73.401	0/1:93:42,51:42:1470:51:1786:-127.531,0,-103.934	0/1:20:15,5:15:527:5:172:-8.10526,0,-41.528	0/0:72:72,0:72:2496:0:0:0,-21.6742,-221.035	0/0:75:75,0:75:2642:0:0:0,-22.5772,-236.728	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.1525	0/1:80:52,28:52:1842:28:1004:-62.3191,0,-139.696	0/1:64:17,47:17:608:47:1680:-126.294,0,-35.4962	0/0:159:159,0:159:5619:0:0:0,-47.8638,-501.947	0/0:98:98,0:98:3492:0:0:0,-29.5009,-311.47
chr02	2697545	.	CAATTTGTTA	TAATTTGTTA,TAATTGTTA	224900	PASS	AB=0.459377,0.535258;ABP=59.1135,45.2725;AC=156,32;AF=0.829787,0.170213;AN=188;AO=8169,2114;CIGAR=1X9M,1X2M1D6M;DP=10339;DPB=10126.4;DPRA=0,1.34289;EPP=17741.8,4593.5;EPPR=0;GTI=4;LEN=1,9;MEANALT=1.96809,2.61538;MQM=57.52,54.0246;MQMR=0;NS=94;NUMALT=2;ODDS=0.51683;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=292769,74892;QR=0;RO=0;RPL=8169,2114;RPP=17741.8,4593.5;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=17741.8,4593.5;SAR=8169,2114;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54,0:0:0:54,0:1932,0:-173.86,-16.2556,0,-173.86,-16.2556,-173.86	1/1:132:0,131,0:0:0:131,0:4677,0:-420.219,-39.4349,0,-420.219,-39.4349,-420.219	1/1:110:0,110,0:0:0:110,0:3944,0:-354.692,-33.1133,0,-354.692,-33.1133,-354.692	1/2:276:0,126,150:0:0:126,150:4520,5321:-801.315,-432.727,-394.797,-368.945,0,-323.79	1/2:98:0,54,44:0:0:54,44:1940,1550:-284.315,-126.136,-109.88,-158.534,0,-145.288	1/2:63:0,32,31:0:0:32,31:1129,1110:-182.405,-90.6076,-80.9746,-92.1518,0,-82.8199	1/1:46:0,46,0:0:0:46,0:1648,0:-148.551,-13.8474,0,-148.551,-13.8474,-148.551	1/1:204:0,202,0:0:0:202,0:7246,0:-650.846,-60.8081,0,-650.846,-60.8081,-650.846	1/1:98:0,96,0:0:0:96,0:3450,0:-309.877,-28.8989,0,-309.877,-28.8989,-309.877	1/1:116:0,115,0:0:0:115,0:4109,0:-369.597,-34.6185,0,-369.597,-34.6185,-369.597	1/1:42:0,42,0:0:0:42,0:1508,0:-135.989,-12.6433,0,-135.989,-12.6433,-135.989	1/1:52:0,51,0:0:0:51,0:1828,0:-164.166,-15.3525,0,-164.166,-15.3525,-164.166	1/1:67:0,67,0:0:0:67,0:2397,0:-215.748,-20.169,0,-215.748,-20.169,-215.748	1/2:70:0,29,41:0:0:29,41:1044,1458:-203.943,-118.826,-110.097,-85.4738,0,-73.1316	1/1:66:0,65,0:0:0:65,0:2317,0:-208.394,-19.567,0,-208.394,-19.567,-208.394	1/2:56:0,27,29:0:0:27,29:972,1023:-162.545,-83.2773,-75.1495,-79.6237,0,-70.8939	1/1:66:0,66,0:0:0:66,0:2366,0:-212.676,-19.868,0,-212.676,-19.868,-212.676	1/2:70:0,31,39:0:0:31,39:1116,1372:-202.611,-111.656,-102.324,-91.3103,0,-79.5701	1/1:29:0,29,0:0:0:29,0:1039,0:-93.5878,-8.72987,0,-93.5878,-8.72987,-93.5878	1/2:284:0,145,139:0:0:145,139:5211,4928:-825.748,-400.865,-357.216,-425.238,0,-383.395	1/2:186:0,93,93:0:0:93,93:3325,3286:-538.027,-267.259,-239.263,-271.123,0,-243.127	1/1:157:0,156,0:0:0:156,0:5600,0:-503.858,-46.9607,0,-503.858,-46.9607,-503.858	1/1:80:0,75,5:0:0:75,5:2688,180:-241.778,-22.5773,0,-227.102,-7.54227,-225.597	1/2:189:0,78,110:0:0:78,110:2800,3923:-546.904,-318.781,-295.3,-228.175,0,-195.061	1/1:96:0,96,0:0:0:96,0:3440,0:-309.614,-28.8989,0,-309.614,-28.8989,-309.614	1/1:336:0,333,0:0:0:333,0:11960,0:-1075.73,-100.243,0,-1075.73,-100.243,-1075.73	1/1:134:0,134,0:0:0:134,0:4804,0:-432.139,-40.338,0,-432.139,-40.338,-432.139	1/1:35:0,35,0:0:0:35,0:1256,0:-113.29,-10.5361,0,-113.29,-10.5361,-113.29	1/1:237:0,236,0:0:0:236,0:8441,0:-759.314,-71.0431,0,-759.314,-71.0431,-759.314	1/1:164:0,162,0:0:0:162,0:5806,0:-521.826,-48.7669,0,-521.826,-48.7669,-521.826	1/2:124:0,51,72:0:0:51,72:1832,2561:-357.786,-208.524,-193.171,-149.366,0,-127.692	1/1:5:0,5,0:0:0:5,0:176,0:-16.1781,-1.50515,0,-16.1781,-1.50515,-16.1781	1/1:6:0,5,0:0:0:5,0:171,0:-15.3386,-1.50515,0,-15.3386,-1.50515,-15.3386	1/1:14:0,14,0:0:0:14,0:504,0:-45.651,-4.21442,0,-45.651,-4.21442,-45.651	1/2:13:0,3,10:0:0:3,10:108,360:-38.454,-29.6517,-28.7486,-9.1617,0,-6.1514	1/2:5:0,2,3:0:0:2,3:72,108:-15.0151,-9.14675,-8.54469,-6.22762,0,-5.32453	1/1:238:0,237,0:0:0:237,0:8486,0:-762.348,-71.3441,0,-762.348,-71.3441,-762.348	1/2:260:0,131,129:0:0:131,129:4712,4469:-745.894,-362.02,-322.585,-384.226,0,-345.393	1/2:40:0,19,20:0:0:19,20:676,709:-112.366,-57.4783,-51.7587,-54.8926,0,-48.872	1/1:3:0,3,0:0:0:3,0:108,0:-10.0704,-0.90309,0,-10.0704,-0.90309,-10.0704	1/1:181:0,176,1:0:0:176,1:6305,36:-566.628,-52.9813,0,-563.82,-50.1644,-563.519	1/1:33:0,33,0:0:0:33,0:1175,0:-105.935,-9.93399,0,-105.935,-9.93399,-105.935	1/1:222:0,222,0:0:0:222,0:7964,0:-716.169,-66.8287,0,-716.169,-66.8287,-716.169	1/1:96:0,96,0:0:0:96,0:3448,0:-310.381,-28.8989,0,-310.381,-28.8989,-310.381	1/2:80:0,42,38:0:0:42,38:1508,1339:-232.187,-109.177,-96.5337,-123.365,0,-111.926	1/1:123:0,122,0:0:0:122,0:4372,0:-393.292,-36.7257,0,-393.292,-36.7257,-393.292	1/2:179:0,85,91:0:0:85,91:3041,3215:-508.425,-260.933,-235.346,-247.5,0,-220.106	1/1:129:0,125,4:0:0:125,4:4500,136:-404.735,-37.6288,0,-393.784,-26.3389,-392.58	1/1:135:0,135,0:0:0:135,0:4839,0:-435.254,-40.6391,0,-435.254,-40.6391,-435.254	1/1:129:0,128,0:0:0:128,0:4599,0:-413.429,-38.5318,0,-413.429,-38.5318,-413.429	1/1:229:0,226,0:0:0:226,0:8089,0:-727.196,-68.0328,0,-727.196,-68.0328,-727.196	1/2:11:0,5,6:0:0:5,6:180,216:-32.5727,-17.8848,-16.3797,-15.0469,0,-13.2407	1/1:171:0,170,0:0:0:170,0:6108,0:-548.105,-51.1751,0,-548.105,-51.1751,-548.105	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:16:0,16,0:0:0:16,0:576,0:-52.0123,-4.81648,0,-52.0123,-4.81648,-52.0123	1/2:119:0,48,69:0:0:48,69:1712,2425:-336.014,-196.84,-182.39,-139.213,0,-118.442	1/2:81:0,41,40:0:0:41,40:1449,1396:-231.656,-113.78,-101.437,-118.227,0,-106.186	1/2:6:0,1,5:0:0:1,5:36,178:-17.7973,-14.8592,-14.5582,-3.29724,0,-1.79209	1/1:26:0,26,0:0:0:26,0:936,0:-84.5072,-7.82678,0,-84.5072,-7.82678,-84.5072	1/1:64:0,64,0:0:0:64,0:2273,0:-204.663,-19.2659,0,-204.663,-19.2659,-204.663	1/2:115:0,43,72:0:0:43,72:1548,2554:-334.425,-208.161,-195.217,-126.621,0,-104.947	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:293:0,292,1:0:0:292,1:10419,36:-937.247,-87.9008,0,-934.311,-84.6045,-934.01	1/2:178:0,90,84:0:0:90,84:3216,2998:-505.961,-244.107,-217.014,-261.857,0,-236.57	1/1:160:0,154,5:0:0:154,5:5498,180:-494.093,-46.3586,0,-479.429,-31.6885,-477.924	1/1:92:0,92,0:0:0:92,0:3304,0:-297.403,-27.6948,0,-297.403,-27.6948,-297.403	1/2:256:0,137,119:0:0:137,119:4917,4235:-746.055,-345.053,-303.812,-401.358,0,-365.536	1/1:117:0,117,0:0:0:117,0:4181,0:-376.268,-35.2205,0,-376.268,-35.2205,-376.268	1/1:15:0,15,0:0:0:15,0:540,0:-48.8448,-4.51545,0,-48.8448,-4.51545,-48.8448	1/1:78:0,78,0:0:0:78,0:2780,0:-250.181,-23.4803,0,-250.181,-23.4803,-250.181	1/2:95:0,52,42:0:0:52,42:1868,1502:-274.757,-122.469,-106.816,-152.393,0,-139.749	1/1:18:0,18,0:0:0:18,0:648,0:-58.6503,-5.41854,0,-58.6503,-5.41854,-58.6503	1/1:170:0,170,0:0:0:170,0:6074,0:-546.087,-51.1751,0,-546.087,-51.1751,-546.087	1/2:125:0,42,83:0:0:42,83:1504,2975:-364.774,-242.256,-229.613,-122.875,0,-97.8894	1/1:135:0,134,0:0:0:134,0:4792,0:-430.664,-40.338,0,-430.664,-40.338,-430.664	1/1:198:0,198,0:0:0:198,0:7112,0:-640.034,-59.6039,0,-640.034,-59.6039,-640.034	1/1:152:0,152,0:0:0:152,0:5460,0:-490.414,-45.7566,0,-490.414,-45.7566,-490.414	1/1:161:0,159,2:0:0:159,2:5716,72:-513.291,-47.8638,0,-507.432,-41.6463,-506.83	1/1:24:0,24,0:0:0:24,0:864,0:-78.0055,-7.22472,0,-78.0055,-7.22472,-78.0055	1/1:125:0,122,1:0:0:122,1:4364,36:-392.223,-36.7257,0,-389.29,-33.7898,-388.989	1/2:141:0,63,76:0:0:63,76:2260,2690:-402.466,-218.335,-199.37,-184.201,0,-161.323	1/2:334:0,118,214:0:0:118,214:4240,7595:-963.576,-617.854,-582.333,-345.815,0,-281.394	1/1:101:0,101,0:0:0:101,0:3632,0:-326.916,-30.404,0,-326.916,-30.404,-326.916	1/1:57:0,56,0:0:0:56,0:2006,0:-180.41,-16.8577,0,-180.41,-16.8577,-180.41	1/2:104:0,58,46:0:0:58,46:2084,1630:-302.774,-132.854,-115.394,-170.276,0,-156.428	1/2:170:0,81,89:0:0:81,89:2901,3163:-493.966,-257.624,-233.241,-236.698,0,-209.906	1/2:40:0,15,25:0:0:15,25:540,894:-116.859,-72.8492,-68.3337,-44.3678,0,-36.8421	1/1:92:0,92,0:0:0:92,0:3308,0:-297.191,-27.6948,0,-297.191,-27.6948,-297.191	1/1:80:0,78,0:0:0:78,0:2785,0:-250.064,-23.4803,0,-250.064,-23.4803,-250.064	1/1:18:0,18,0:0:0:18,0:648,0:-58.6107,-5.41854,0,-58.6107,-5.41854,-58.6107	1/2:80:0,38,39:0:0:38,39:1368,1381:-223.435,-112.076,-100.637,-111.386,0,-99.6463	1/2:66:0,18,47:0:0:18,47:648,1652:-186.903,-134.027,-128.608,-52.8735,0,-38.7251	1/1:74:0,74,0:0:0:74,0:2660,0:-239.495,-22.2762,0,-239.495,-22.2762,-239.495	1/1:117:0,116,0:0:0:116,0:4164,0:-374.486,-34.9195,0,-374.486,-34.9195,-374.486
chr02	2757484	.	A	C	8491.21	PASS	AB=0.462549;ABP=28.0583;AC=35;AF=0.188172;AN=186;AO=958;CIGAR=1X;DP=5894;DPB=5894;DPRA=0.987769;EPP=2083.28;EPPR=10721.4;GTI=2;LEN=1;MEANALT=1;MQM=28.4562;MQMR=29.6341;NS=93;NUMALT=1;ODDS=2.16275;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34299;QR=173490;RO=4936;RPL=0;RPP=2083.28;RPPR=10721.4;RPR=958;RUN=1;SAF=958;SAP=2083.28;SAR=0;SRF=4936;SRP=10721.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:720:0:0:0,-6.0206,-49.5253	0/0:67:67,0:67:2313:0:0:0,-20.169,-163.022	0/0:59:59,0:59:2116:0:0:0,-17.7608,-146.196	0/1:138:80,58:80:2830:58:2088:-109.533,0,-164.865	0/1:32:22,10:22:750:10:360:-15.2665,0,-43.1428	0/1:36:17,19:17:578:19:684:-33.005,0,-30.7837	0/0:84:84,0:84:2940:0:0:0,-25.2865,-215.984	0/0:101:101,0:101:3552:0:0:0,-30.404,-249.527	0/0:60:60,0:60:2129:0:0:0,-18.0618,-146.811	0/0:54:54,0:54:1871:0:0:0,-16.2556,-137.124	0/0:52:52,0:52:1849:0:0:0,-15.6536,-134.468	0/0:54:54,0:54:1936:0:0:0,-16.2556,-133.804	0/0:73:73,0:73:2552:0:0:0,-21.9752,-177.286	0/1:68:38,30:38:1330:30:1072:-53.3734,0,-71.5316	0/1:55:33,22:33:1180:22:788:-39.4908,0,-69.7357	0/1:52:23,29:23:790:29:1036:-55.7272,0,-39.4058	0/0:51:51,0:51:1801:0:0:0,-15.3525,-125.218	0/1:47:28,19:28:962:19:680:-29.4924,0,-53.2834	0/0:47:47,0:47:1620:0:0:0,-14.1484,-113.581	0/1:107:44,63:44:1553:63:2248:-128.29,0,-80.3213	0/1:62:29,33:29:1006:33:1172:-62.4434,0,-52.0781	0/0:54:54,0:54:1920:0:0:0,-16.2556,-145.396	0/0:23:23,0:23:820:0:0:0,-6.92369,-60.0188	0/1:41:15,26:15:540:26:924:-51.494,0,-24.7092	0/0:46:46,0:46:1633:0:0:0,-13.8474,-113.538	0/0:123:123,0:123:4302:0:0:0,-37.0267,-330.266	0/0:144:144,0:144:4963:0:0:0,-43.3483,-350.405	0/0:38:38,0:38:1360:0:0:0,-11.4391,-95.0641	0/0:91:91,0:91:3256:0:0:0,-27.3937,-245.135	0/0:119:119,0:119:4136:0:0:0,-35.8226,-289.002	0/1:55:30,25:30:1027:25:900:-48.8953,0,-59.0422	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.19878	0/0:11:11,0:11:388:0:0:0,-3.31133,-27.7089	.:.:.:.:.:.:.:.	0/1:8:3,5:3:93:5:180:-9.36181,0,-4.58613	0/1:6:2,4:2:68:4:144:-7.48975,0,-3.31513	0/0:163:163,0:163:5833:0:0:0,-49.0679,-441.613	0/1:129:71,58:71:2412:58:2084:-102.642,0,-130.53	0/1:75:49,26:49:1650:26:932:-37.0842,0,-94.1916	0/0:5:5,0:5:180:0:0:0,-1.50515,-12.1658	0/0:120:120,0:120:4209:0:0:0,-36.1236,-292.156	0/0:41:41,0:41:1453:0:0:0,-12.3422,-100.035	0/0:50:50,0:50:1653:0:0:0,-15.0515,-117.234	0/0:39:39,0:39:1396:0:0:0,-11.7402,-102.597	0/1:56:25,31:25:896:31:1104:-63.6212,0,-47.4588	0/0:35:35,0:35:1256:0:0:0,-10.536,-95.4684	0/1:62:26,36:26:928:36:1284:-62.9544,0,-45.5662	0/0:121:121,0:121:4264:0:0:0,-36.4246,-313.503	0/0:66:66,0:66:2353:0:0:0,-19.868,-171.536	0/0:65:65,0:65:2275:0:0:0,-19.5669,-165.591	0/0:102:102,0:102:3622:0:0:0,-30.7051,-277.549	1/1:4:0,4:0:0:4:144:-10.3371,-1.20412,0	0/0:211:211,0:211:7179:0:0:0,-63.5173,-508.828	0/0:26:26,0:26:909:0:0:0,-7.82678,-69.8131	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.19878	0/1:57:29,28:29:1032:28:1004:-51.209,0,-54.6744	0/1:29:21,8:21:692:8:288:-12.2849,0,-42.9078	1/1:2:0,2:0:0:2:68:-5.65596,-0.60206,0	0/0:5:5,0:5:172:0:0:0,-1.50515,-13.7649	0/0:64:64,0:64:2247:0:0:0,-19.2659,-158.344	0/1:102:65,37:65:2321:37:1315:-65.6975,0,-137.143	0/0:4:4,0:4:140:0:0:0,-1.20412,-10.6338	0/0:69:69,0:69:2452:0:0:0,-20.7711,-186.239	0/1:107:68,39:68:2432:39:1404:-69.0286,0,-144.035	0/0:76:75,1:75:2613:1:36:0,-20.1421,-179.403	0/0:43:43,0:43:1544:0:0:0,-12.9443,-112.065	0/1:42:18,24:18:633:24:860:-49.6786,0,-34.3982	0/0:49:49,0:49:1684:0:0:0,-14.7505,-123.649	0/0:31:31,0:31:1085:0:0:0,-9.33193,-78.0884	0/0:59:59,0:59:2105:0:0:0,-17.7608,-145.669	0/1:69:38,31:38:1349:31:1112:-63.7452,0,-81.5201	0/0:8:8,0:8:273:0:0:0,-2.40824,-20.0022	0/0:81:81,0:81:2908:0:0:0,-24.3834,-201.102	0/1:48:27,21:27:938:21:748:-33.752,0,-50.7882	0/0:83:83,0:83:2901:0:0:0,-24.9855,-204.175	0/0:131:131,0:131:4689:0:0:0,-39.4349,-339.07	0/0:70:70,0:70:2374:0:0:0,-21.0721,-168.276	0/0:79:79,0:79:2737:0:0:0,-23.7814,-189.738	0/0:12:12,0:12:432:0:0:0,-3.61236,-30.4464	0/0:84:84,0:84:2959:0:0:0,-25.2865,-206.477	0/1:96:38,58:38:1341:58:2080:-104.504,0,-63.5772	0/1:125:72,53:72:2546:53:1900:-97.6594,0,-148.084	0/0:82:82,0:82:2913:0:0:0,-24.6845,-212.969	0/0:62:62,0:62:2228:0:0:0,-18.6639,-161.163	0/1:76:46,30:46:1603:30:1076:-54.0577,0,-94.8479	0/1:119:64,55:64:2296:55:1976:-108.983,0,-132.05	0/1:24:15,9:15:525:9:324:-13.588,0,-30.1213	0/0:83:83,0:83:2961:0:0:0,-24.9855,-203.048	0/0:58:58,0:58:2039:0:0:0,-17.4597,-141.288	0/0:65:65,0:65:2324:0:0:0,-19.5669,-160.787	0/1:93:56,37:56:1963:37:1320:-62.5316,0,-109.862	0/1:40:13,27:13:468:27:964:-58.1169,0,-22.2114	0/0:40:40,0:40:1402:0:0:0,-12.0412,-102.787	0/0:75:75,0:75:2673:0:0:0,-22.5772,-194.453
chr02	2785842	.	C	G	102505	PASS	AB=0.498501;ABP=3.04935;AC=153;AF=0.81383;AN=188;AO=4736;CIGAR=1X;DP=5745;DPB=5745;DPRA=0;EPP=10287.1;EPPR=2191.85;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9607;MQMR=59.994;NS=94;NUMALT=1;ODDS=0.707099;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168569;QR=35889;RO=1008;RPL=4736;RPP=10287.1;RPPR=2191.85;RPR=0;RUN=1;SAF=4736;SAP=10287.1;SAR=0;SRF=1008;SRP=2191.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:64:1,63:1:21:63:2248:-200.483,-17.166,0	1/1:73:0,73:0:0:73:2591:-233.437,-21.9752,0	0/1:81:37,44:37:1332:44:1575:-117.657,0,-95.799	0/1:52:20,32:20:720:32:1152:-88.332,0,-49.4752	0/1:29:15,14:15:532:14:500:-36.6063,0,-39.4832	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:113:0,113:0:0:113:4013:-361.34,-34.0164,0	1/1:74:0,74:0:0:74:2640:-237.845,-22.2762,0	1/1:62:0,62:0:0:62:2199:-198.175,-18.6639,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:33:0,33:0:0:33:1153:-104.074,-9.93399,0	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	0/1:58:27,31:27:938:31:1093:-81.2067,0,-67.2674	0/1:47:25,22:25:887:22:784:-56.7355,0,-65.9997	0/1:26:14,12:14:504:12:428:-31.032,0,-37.8713	1/1:35:0,35:0:0:35:1230:-111,-10.5361,0	0/1:37:13,24:13:464:24:851:-65.7713,0,-30.9594	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:82:31,51:31:1108:51:1817:-139.125,0,-75.3465	0/1:93:34,59:34:1220:59:2096:-160.782,0,-82.111	1/1:63:0,63:0:0:63:2207:-198.89,-18.9649,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:39:20,19:20:716:19:684:-50.1502,0,-53.0275	1/1:58:0,58:0:0:58:2036:-183.505,-17.4597,0	1/1:306:0,306:0:0:306:10873:-978.472,-92.1152,0	1/1:136:0,136:0:0:136:4867:-438.183,-40.9401,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:203:0,203:0:0:203:7216:-649.496,-61.1091,0	1/1:86:0,86:0:0:86:3049:-274.638,-25.8886,0	0/1:80:49,31:49:1752:31:1097:-74.9556,0,-133.882	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:20:0,20:0:0:20:715:-64.6759,-6.0206,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	1/1:125:0,125:0:0:125:4456:-401.206,-37.6288,0	0/1:145:63,82:63:2247:82:2940:-221.185,0,-158.843	0/1:36:20,16:20:716:16:572:-40.9763,0,-53.9306	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:59:0,59:0:0:59:2100:-189.267,-17.7608,0	1/1:48:0,48:0:0:48:1715:-154.626,-14.4494,0	1/1:76:0,76:0:0:76:2678:-241.262,-22.8783,0	1/1:34:0,34:0:0:34:1188:-107.222,-10.235,0	0/1:44:20,24:20:712:24:852:-63.7551,0,-51.1613	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:75:37,38:37:1319:38:1344:-98.6801,0,-96.4339	1/1:132:1,131:1:36:131:4700:-419.56,-36.1377,0	1/1:60:0,59:0:0:59:2074:-186.568,-17.7608,0	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:97:0,97:0:0:97:3471:-312.593,-29.1999,0	1/1:14:0,14:0:0:14:493:-44.7015,-4.21442,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:35:20,15:20:701:15:528:-37.3101,0,-52.8757	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	0/1:104:55,49:55:1949:49:1714:-123.234,0,-144.377	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:108:0,108:0:0:108:3842:-345.974,-32.5112,0	0/1:128:72,56:72:2559:56:2000:-141.742,0,-192.026	0/1:35:11,24:11:387:24:856:-66.8251,0,-24.6299	1/1:54:1,53:1:36:53:1896:-167.32,-12.6573,0	0/1:119:69,50:69:2453:50:1792:-125.74,0,-185.201	1/1:53:0,53:0:0:53:1900:-171.25,-15.9546,0	1/1:12:0,12:0:0:12:408:-37.0441,-3.61236,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:68:33,35:33:1184:35:1237:-91.1623,0,-86.3983	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:95:0,95:0:0:95:3400:-306.215,-28.5979,0	0/1:27:16,11:16:576:11:392:-27.4922,0,-44.0472	1/1:114:0,114:0:0:114:4076:-367.025,-34.3174,0	1/1:72:0,72:0:0:72:2554:-230.108,-21.6742,0	1/1:124:0,124:0:0:124:4391:-395.235,-37.3277,0	1/1:89:0,89:0:0:89:3141:-282.915,-26.7917,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:74:0,74:0:0:74:2645:-238.295,-22.2762,0	0/1:71:34,37:34:1220:37:1328:-98.4491,0,-88.7337	0/1:150:79,71:79:2836:71:2529:-182.706,0,-210.324	1/1:90:1,89:1:36:89:3196:-284.264,-23.4944,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:47:28,19:28:978:19:663:-45.845,0,-74.1828	0/1:85:53,32:53:1874:32:1137:-77.0494,0,-143.35	0/1:42:20,22:20:716:22:762:-56.2518,0,-52.1245	1/1:52:0,52:0:0:52:1850:-166.779,-15.6536,0	1/1:54:0,54:0:0:54:1917:-172.805,-16.2556,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:74:35,39:35:1229:39:1377:-101.95,0,-88.6357	0/1:34:24,10:24:851:10:360:-22.5093,0,-66.6744	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	1/1:55:0,55:0:0:55:1929:-173.882,-16.5567,0
chr02	2804107	.	T	C	187993	PASS	AB=0.609091;ABP=275.905;AC=156;AF=0.829787;AN=188;AO=8453;CIGAR=1X;DP=9504;DPB=9504;DPRA=0;EPP=18150.6;EPPR=2254.86;GTI=4;LEN=1;MEANALT=1.06383;MQM=59.9831;MQMR=60;NS=94;NUMALT=1;ODDS=1.15079;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302254;QR=37476;RO=1045;RPL=24;RPP=18150.6;RPPR=2254.86;RPR=8429;RUN=1;SAF=8453;SAP=18358.5;SAR=0;SRF=1045;SRP=2272.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:86:0,86:0:0:86:3063:-275.899,-25.8886,0	1/1:105:0,105:0:0:105:3764:-338.959,-31.6082,0	1/1:231:0,231:0:0:231:8267:-744.031,-69.5379,0	0/1:119:65,53:65:2332:53:1891:-134.586,0,-174.258	0/1:33:22,11:22:792:11:392:-25.6861,0,-61.6717	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:101:0,101:0:0:101:3598:-324.027,-30.404,0	1/1:217:0,216:0:0:216:7711:-693.664,-65.0225,0	1/1:95:0,95:0:0:95:3380:-304.416,-28.5979,0	1/1:76:0,76:0:0:76:2723:-245.313,-22.8783,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:48:18,30:18:648:30:1080:-83.0638,0,-44.2024	0/1:54:28,26:28:1004:26:928:-67.5826,0,-74.4202	0/1:54:17,37:17:600:37:1332:-103.927,0,-38.0736	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:225:82,143:82:2939:143:5086:-390.151,0,-197.011	0/1:158:62,96:62:2232:96:3435:-261.8,0,-153.581	1/1:162:0,162:0:0:162:5771:-519.499,-48.7669,0	1/1:168:0,168:0:0:168:6032:-542.937,-50.573,0	0/1:90:38,52:38:1364:52:1860:-140.587,0,-95.968	1/1:131:0,131:0:0:131:4700:-423.159,-39.4349,0	1/1:325:0,325:0:0:325:11617:-1045.4,-97.8348,0	1/1:341:0,341:0:0:341:12234:-1100.9,-102.651,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:308:0,308:0:0:308:10999:-989.808,-92.7172,0	1/1:226:0,226:0:0:226:8089:-728.024,-68.0328,0	0/1:93:30,63:30:1063:63:2220:-172.067,0,-67.985	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:17:5,12:5:180:12:428:-33.7413,0,-11.4346	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:150:0,150:0:0:150:5374:-483.791,-45.1545,0	0/1:132:34,98:34:1212:98:3499:-275.385,0,-69.6504	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7641	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:106:0,106:0:0:106:3791:-341.388,-31.9092,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:242:0,242:0:0:242:8671:-780.381,-72.8493,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:37:15,22:15:536:22:788:-60.1067,0,-37.4367	1/1:190:0,189:0:0:189:6754:-607.574,-56.8947,0	0/1:121:34,87:34:1220:87:3120:-244.602,0,-73.6822	1/1:208:8,200:8:284:200:7143:-617.023,-36.7109,0	1/1:135:0,135:0:0:135:4836:-435.394,-40.6391,0	1/1:141:0,140:0:0:140:5011:-450.777,-42.1442,0	1/1:209:0,209:0:0:209:7458:-671.263,-62.9153,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:171:0,171:0:0:171:6126:-551.439,-51.4761,0	1/1:113:0,113:0:0:113:4052:-364.867,-34.0164,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:147:56,91:56:2012:91:3254:-248.828,0,-137.102	0/1:33:10,23:10:360:23:797:-62.1107,0,-22.8103	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	0/1:74:35,39:35:1260:39:1404:-104.383,0,-91.4293	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:174:0,174:0:0:174:6216:-559.536,-52.3792,0	0/1:144:46,98:46:1647:98:3512:-272.941,0,-105.169	1/1:135:4,131:4:144:131:4684:-408.408,-27.3254,0	1/1:89:0,89:0:0:89:3184:-286.784,-26.7917,0	0/1:186:61,125:61:2188:125:4441:-343.871,0,-141.194	1/1:227:3,224:3:108:224:8009:-710.754,-58.2586,0	1/1:27:0,27:0:0:27:940:-84.9117,-8.12781,0	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	0/1:33:17,16:17:604:16:563:-41.0652,0,-44.7566	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:200:0,200:0:0:200:7132:-641.94,-60.206,0	0/1:77:38,39:38:1368:39:1396:-102.76,0,-100.242	1/1:282:0,282:0:0:282:10042:-903.586,-84.8905,0	1/1:199:0,199:0:0:199:7147:-643.283,-59.905,0	1/1:104:0,104:0:0:104:3731:-335.989,-31.3071,0	1/1:106:0,106:0:0:106:3782:-340.579,-31.9092,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:124:0,124:0:0:124:4452:-400.849,-37.3277,0	0/1:87:30,57:30:1080:57:2036:-157.005,0,-71.3236	0/1:330:129,201:129:4640:201:7186:-547.456,0,-318.42	1/1:51:0,51:0:0:51:1814:-163.535,-15.3525,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:34:15,19:15:540:19:676:-50.9324,0,-38.7015	0/1:100:46,54:46:1639:54:1936:-144.413,0,-117.695	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	1/1:52:0,52:0:0:52:1872:-168.731,-15.6536,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:78:29,48:29:1036:48:1713:-130.915,0,-70.0149	0/1:53:36,16:36:1292:16:565:-35.1666,0,-100.57	1/1:130:0,130:0:0:130:4652:-418.842,-39.1339,0	1/1:65:1,64:1:36:64:2285:-202.312,-15.9687,0
chr02	2880882	.	T	C	208183	PASS	AB=0.67696;ABP=786.91;AC=156;AF=0.829787;AN=188;AO=9415;CIGAR=1X;DP=10356;DPB=10356;DPRA=0;EPP=20447.4;EPPR=2033.34;GTI=5;LEN=1;MEANALT=1.06383;MQM=59.9604;MQMR=60;NS=94;NUMALT=1;ODDS=4.19818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=337006;QR=33428;RO=935;RPL=0;RPP=20447.4;RPPR=2033.34;RPR=9415;RUN=1;SAF=9415;SAP=20447.4;SAR=0;SRF=935;SRP=2033.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:140:0,140:0:0:140:4995:-449.698,-42.1442,0	1/1:142:0,142:0:0:142:5061:-455.631,-42.7463,0	0/1:153:42,110:42:1504:110:3922:-307.055,0,-89.5382	0/1:64:12,52:12:419:52:1851:-147.603,0,-18.7768	0/1:56:16,40:16:572:40:1427:-111.841,0,-34.9557	1/1:138:0,138:0:0:138:4921:-443.041,-41.5421,0	1/1:194:1,193:1:36:193:6903:-617.737,-54.8015,0	1/1:95:0,95:0:0:95:3392:-305.496,-28.5979,0	1/1:164:0,164:0:0:164:5876:-528.95,-49.3689,0	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	1/1:91:0,91:0:0:91:3268:-294.34,-27.3937,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:83:29,54:29:1031:54:1936:-149.513,0,-68.1171	0/1:62:22,40:22:788:40:1432:-110.513,0,-52.5809	0/1:49:9,40:9:324:40:1428:-114.067,0,-14.7554	1/1:83:0,83:0:0:83:2980:-268.427,-24.9855,0	0/1:70:19,51:19:667:51:1832:-144.089,0,-39.2825	1/1:44:0,44:0:0:44:1567:-141.321,-13.2453,0	0/1:126:31,95:31:1108:95:3391:-267.476,0,-62.1012	0/1:91:35,56:35:1233:56:2016:-154.315,0,-83.8784	1/1:142:0,142:0:0:142:5066:-456.085,-42.7463,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:39:13,26:13:468:26:936:-72.8189,0,-30.7195	1/1:60:0,60:0:0:60:2147:-193.497,-18.0618,0	1/1:512:0,512:0:0:512:18334:-1649.64,-154.127,0	1/1:243:0,243:0:0:243:8674:-780.655,-73.1503,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:247:0,247:0:0:247:8854:-796.684,-74.3544,0	1/1:252:0,252:0:0:252:8991:-809.146,-75.8596,0	0/1:135:51,83:51:1828:83:2968:-226.655,0,-124.103	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:12:2,10:2:72:10:356:-28.7689,0,-3.22436	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:245:0,245:0:0:245:8780:-789.997,-73.7524,0	0/1:211:62,149:62:2220:149:5307:-414.218,0,-136.547	0/1:55:17,38:17:608:38:1364:-106.504,0,-38.4954	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:186:0,186:0:0:186:6666:-599.588,-55.9916,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:195:0,195:0:0:195:6957:-626.192,-58.7009,0	1/1:88:0,88:0:0:88:3147:-283.455,-26.4906,0	0/1:61:22,39:22:784:39:1404:-108.296,0,-52.5211	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0	0/1:129:31,98:31:1112:98:3512:-277.456,0,-61.5585	1/1:318:0,318:0:0:318:11390:-1024.98,-95.7275,0	1/1:138:0,138:0:0:138:4936:-444.388,-41.5421,0	1/1:270:0,270:0:0:270:9665:-869.782,-81.2781,0	1/1:190:0,190:0:0:190:6828:-614.587,-57.1957,0	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	1/1:144:0,144:0:0:144:5163:-464.809,-43.3483,0	1/1:55:0,55:0:0:55:1965:-177.123,-16.5567,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:116:27,89:27:968:89:3188:-252.213,0,-52.5179	0/1:55:34,21:34:1211:21:752:-51.4496,0,-92.7389	1/1:15:1,14:1:36:14:504:-42.0998,-0.917175,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:105:0,105:0:0:105:3768:-339.318,-31.6082,0	0/1:128:53,75:53:1900:75:2677:-202.642,0,-132.746	1/1:8:0,8:0:0:8:288:-26.1802,-2.40824,0	1/1:270:0,269:0:0:269:9629:-866.2,-80.9771,0	0/1:201:61,140:61:2184:140:5016:-391.079,0,-136.319	1/1:102:1,100:1:36:100:3555:-316.542,-27.1656,0	1/1:86:0,86:0:0:86:3048:-274.552,-25.8886,0	0/1:149:61,88:61:2184:88:3160:-239.771,0,-151.972	1/1:143:1,142:1:36:142:5096:-455.184,-39.449,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:73:0,73:0:0:73:2600:-234.221,-21.9752,0	0/1:91:43,48:43:1544:48:1712:-126.972,0,-111.859	1/1:46:0,46:0:0:46:1652:-148.96,-13.8474,0	1/1:148:0,148:0:0:148:5295:-476.656,-44.5524,0	0/1:61:16,45:16:572:45:1616:-127.367,0,-33.4506	1/1:312:1,311:1:36:311:11129:-997.875,-90.3231,0	1/1:163:0,163:0:0:163:5852:-526.79,-49.0679,0	1/1:161:0,160:0:0:160:5733:-515.873,-48.1648,0	1/1:162:1,161:1:36:161:5784:-517.074,-45.1686,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:134:0,133:0:0:133:4776:-429.635,-40.037,0	0/1:108:29,79:29:1035:79:2831:-222.517,0,-60.9518	0/1:193:65,128:65:2328:128:4583:-354.527,0,-151.681	1/1:128:0,128:0:0:128:4590:-412.947,-38.5318,0	1/1:68:0,68:0:0:68:2435:-219.405,-20.47,0	0/1:61:16,45:16:564:45:1616:-127.359,0,-32.7275	0/1:129:39,90:39:1396:90:3223:-251.45,0,-87.1062	0/1:36:14,22:14:500:22:792:-60.7686,0,-34.4991	1/1:104:0,104:0:0:104:3731:-335.961,-31.3071,0	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:92:32,60:32:1152:60:2143:-165.425,0,-76.2954	0/1:45:18,27:18:648:27:968:-73.891,0,-45.1055	1/1:89:0,89:0:0:89:3185:-286.872,-26.7917,0	1/1:119:0,119:0:0:119:4263:-383.847,-35.8226,0
chr02	2880904	.	C	T	11348.8	PASS	AB=0.319861;ABP=811.945;AC=32;AF=0.170213;AN=188;AO=924;CIGAR=1X;DP=10335;DPB=10335;DPRA=0.844156;EPP=1966.26;EPPR=20176.8;GTI=4;LEN=1;MEANALT=1;MQM=59.9989;MQMR=59.9609;NS=94;NUMALT=1;ODDS=5.98427;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32902;QR=335504;RO=9410;RPL=919;RPP=1966.26;RPPR=20176.8;RPR=5;RUN=1;SAF=924;SAP=2009.45;SAR=0;SRF=9410;SRP=20436.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	0/0:138:138,0:138:4915:0:0:0,-41.5421,-442.501	0/0:140:140,0:140:4941:0:0:0,-42.1442,-444.829	0/1:152:112,40:112:4016:40:1395:-80.0853,0,-315.872	0/1:64:51,13:51:1832:13:468:-23.1937,0,-145.895	0/1:52:38,14:38:1351:14:504:-30.0445,0,-106.236	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871	0/0:192:192,0:192:6853:0:0:0,-57.7978,-616.84	0/0:94:94,0:94:3350:0:0:0,-28.2968,-301.717	0/0:162:162,0:162:5778:0:0:0,-48.7669,-520.133	0/0:93:93,0:93:3298:0:0:0,-27.9958,-297.04	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/1:83:54,29:54:1931:29:1036:-68.5684,0,-149.063	0/1:62:40,22:40:1423:22:792:-52.9418,0,-109.703	0/1:49:39,10:39:1381:10:350:-17.0855,0,-109.836	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.421	0/1:69:52,17:52:1842:17:595:-33.1056,0,-145.288	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	0/1:126:92,34:92:3287:34:1220:-72.177,0,-258.12	0/1:93:57,36:57:2043:36:1285:-87.9565,0,-156.141	0/0:141:141,0:141:5020:0:0:0,-42.4452,-451.947	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/1:39:26,13:26:927:13:460:-29.9952,0,-72.0068	0/0:61:61,0:61:2160:0:0:0,-18.3628,-194.665	0/0:517:517,0:517:18441:0:0:0,-155.633,-1659.28	0/0:245:245,0:245:8724:0:0:0,-73.7523,-785.155	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:249:249,0:249:8879:0:0:0,-74.9565,-798.935	0/0:252:251,0:251:8938:0:0:0,-75.5585,-804.022	0/1:131:83,48:83:2976:48:1716:-115.291,0,-228.637	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:244:244,0:244:8717:0:0:0,-73.4513,-784.492	0/1:217:156,61:156:5567:61:2160:-129.342,0,-435.803	0/1:53:37,16:37:1324:16:568:-35.4973,0,-103.508	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:185:185,0:185:6568:0:0:0,-55.6905,-590.773	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2702	0/0:190:190,0:190:6761:0:0:0,-57.1957,-608.547	0/0:88:88,0:88:3132:0:0:0,-26.4906,-282.105	0/1:62:39,23:39:1404:23:808:-54.3759,0,-107.995	0/0:89:89,0:89:3168:0:0:0,-26.7917,-285.343	0/1:133:100,33:100:3592:33:1180:-66.4711,0,-283.449	0/0:313:313,0:313:11169:0:0:0,-94.2224,-1005.1	0/0:140:140,0:140:4944:0:0:0,-42.1442,-445.11	0/0:269:269,0:269:9584:0:0:0,-80.9771,-862.496	0/0:188:188,0:188:6709:0:0:0,-56.5936,-603.883	0/1:14:10,4:10:356:4:144:-9.0992,0,-28.1668	0/0:143:143,0:143:5129:0:0:0,-43.0473,-461.749	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/1:116:89,27:89:3152:27:972:-52.8784,0,-248.974	0/1:54:21,33:21:752:33:1175:-89.8013,0,-51.7506	0/0:15:14,1:14:504:1:36:0,-0.917175,-42.0998	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/1:127:75,52:75:2668:52:1860:-129.449,0,-202.133	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8161	0/0:272:272,0:272:9712:0:0:0,-81.8802,-874.026	0/1:199:140,59:140:5001:59:2124:-131.523,0,-390.332	0/0:102:101,1:101:3604:1:36:0,-27.1068,-320.948	0/0:90:90,0:90:3209:0:0:0,-27.0927,-289.032	0/1:150:90,60:90:3219:60:2118:-145.731,0,-244.777	0/0:145:144,1:144:5146:1:36:0,-40.0511,-459.683	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:73:73,0:73:2588:0:0:0,-21.9752,-233.17	0/1:91:48,43:48:1698:43:1526:-110.239,0,-125.711	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:152:152,0:152:5402:0:0:0,-45.7566,-486.281	0/1:61:45,16:45:1605:16:572:-33.4506,0,-126.375	0/0:307:306,1:306:10891:1:36:0,-88.8179,-976.454	0/0:165:164,1:164:5876:1:36:0,-46.0717,-525.352	0/0:161:161,0:161:5743:0:0:0,-48.4658,-516.985	0/0:160:159,1:159:5671:1:36:0,-44.5665,-506.908	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:133:133,0:133:4750:0:0:0,-40.037,-427.657	0/1:106:78,28:78:2768:28:1000:-58.4062,0,-217.451	0/1:192:126,66:126:4497:66:2350:-153.96,0,-347.087	0/0:127:127,0:127:4502:0:0:0,-38.2308,-405.032	0/0:68:68,0:68:2404:0:0:0,-20.47,-216.615	0/1:60:45,15:45:1582:15:527:-29.6984,0,-124.601	0/1:126:89,37:89:3175:37:1315:-80.7212,0,-248.036	0/1:35:22,13:22:792:13:464:-31.5615,0,-61.0696	0/0:107:107,0:107:3811:0:0:0,-32.2102,-343.16	0/0:85:85,0:85:3017:0:0:0,-25.5875,-271.131	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:91:60,31:60:2120:31:1107:-72.5473,0,-163.666	0/1:46:27,19:27:968:19:679:-47.5916,0,-73.59	0/0:91:91,0:91:3242:0:0:0,-27.3937,-292.001	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.895
chr02	2897880	.	T	C	20461.1	PASS	AB=0.527463;ABP=18.0383;AC=33;AF=0.175532;AN=188;AO=1221;CIGAR=1X;DP=6620;DPB=6620;DPRA=1.10653;EPP=2593.93;EPPR=11452.6;GTI=1;LEN=1;MEANALT=1.05263;MQM=59.9869;MQMR=59.9963;NS=94;NUMALT=1;ODDS=1.55289;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43011;QR=193330;RO=5396;RPL=7;RPP=2593.93;RPPR=11452.6;RPR=1214;RUN=1;SAF=1221;SAP=2654.38;SAR=0;SRF=5396;SRP=11720.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:94:94,0:94:3340:0:0:0,-28.2968,-300.809	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:89:49,40:49:1764:40:1436:-102.746,0,-132.252	0/1:46:21,25:21:752:25:877:-65.3987,0,-54.1589	0/1:40:19,21:19:652:21:739:-54.7912,0,-46.957	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/0:139:139,0:139:4980:0:0:0,-41.8432,-448.348	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:77:77,0:77:2750:0:0:0,-23.1793,-247.741	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:82:40,41:40:1436:41:1440:-105.296,0,-104.941	0/1:54:29,25:29:1044:25:895:-64.6147,0,-78.0192	0/1:52:23,29:23:824:29:1036:-77.9004,0,-58.8298	0/0:94:94,0:94:3369:0:0:0,-28.2968,-303.424	0/1:67:37,30:37:1328:30:1058:-75.3606,0,-99.6532	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:184:89,95:89:3187:95:3357:-246.958,0,-231.663	0/1:85:43,42:43:1544:42:1484:-108.265,0,-113.666	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:56:19,37:19:684:37:1290:-99.5417,0,-45.0326	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:164:164,0:164:5896:0:0:0,-49.3689,-530.747	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:143:143,0:143:5144:0:0:0,-43.0473,-463.098	0/0:82:82,0:82:2906:0:0:0,-24.6845,-261.774	0/1:54:25,29:25:900:29:1029:-76.6616,0,-65.0654	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:162:162,0:162:5803:0:0:0,-48.7669,-522.383	0/1:55:30,25:30:1080:25:859:-61.0641,0,-80.9566	0/1:73:40,33:40:1440:33:1158:-82.5498,0,-107.923	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:348:347,0:347:12444:0:0:0,-104.457,-1119.58	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/1:57:23,34:23:824:34:1196:-90.7867,0,-57.3246	0/0:50:49,1:49:1737:1:36:0,-11.4532,-153.014	0/1:95:48,47:48:1720:47:1659:-120.999,0,-126.488	0/0:114:113,1:113:4068:1:36:0,-30.7191,-362.706	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.835	0/0:146:146,0:146:5252:0:0:0,-43.9504,-472.814	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:6:4,2:4:140:2:68:-4.65153,0,-11.1384	0/0:155:155,0:155:5524:0:0:0,-46.6596,-497.286	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:66:23,43:23:828:43:1511:-116.412,0,-54.9761	0/1:17:12,5:12:432:5:176:-11.0675,0,-34.1037	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/1:99:42,57:42:1512:57:2025:-152.72,0,-106.573	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:114:113,1:113:4053:1:32:0,-31.1181,-361.755	0/1:128:55,73:55:1972:73:2564:-192.478,0,-139.223	0/0:64:59,5:59:2124:5:165:0,-4.09232,-176.255	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/1:103:43,59:43:1536:59:2072:-155.684,0,-107.468	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:118:51,67:51:1828:67:2379:-178.846,0,-129.279	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:62:27,35:27:968:35:1234:-92.6988,0,-68.7731	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:132:132,0:132:4739:0:0:0,-39.736,-426.666	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:141:140,1:140:5024:1:36:0,-38.847,-448.707	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/1:67:22,45:22:788:45:1587:-122.951,0,-51.0758	0/1:135:70,65:70:2516:65:2287:-165.451,0,-186.052	0/0:93:93,0:93:3308:0:0:0,-27.9958,-297.938	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.87	0/1:91:41,50:41:1463:50:1758:-131.107,0,-104.572	0/1:126:68,58:68:2440:58:2035:-145.491,0,-181.925	0/1:32:16,16:16:572:16:558:-40.9143,0,-42.1805	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:61:60,1:60:2151:1:36:0,-14.7646,-190.258	0/1:81:40,41:40:1436:41:1431:-104.691,0,-105.154	0/1:69:29,40:29:1040:40:1400:-105.524,0,-73.1433	0/0:56:56,0:56:1997:0:0:0,-16.8577,-180.002	0/0:119:119,0:119:4211:0:0:0,-35.8226,-379.17
chr02	2897930	.	G	A	19239.4	PASS	AB=0.501536;ABP=3.05699;AC=33;AF=0.177419;AN=186;AO=1148;CIGAR=1X;DP=6112;DPB=6112;DPRA=1.1274;EPP=2461.24;EPPR=10639.3;GTI=0;LEN=1;MEANALT=1.02778;MQM=59.9939;MQMR=59.994;NS=93;NUMALT=1;ODDS=2.50859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40903;QR=176457;RO=4962;RPL=1144;RPP=2461.24;RPPR=10648;RPR=4;RUN=1;SAF=0;SAP=2495.86;SAR=1148;SRF=1;SRP=10769.2;SRR=4961;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:70:70,0:70:2476:0:0:0,-21.0721,-223.092	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:166:166,0:166:5917:0:0:0,-49.971,-532.64	0/1:86:53,33:53:1888:33:1175:-80.1684,0,-144.31	0/1:47:22,25:22:780:25:896:-66.8119,0,-56.3746	0/1:10:6,4:6:208:4:144:-10.3033,0,-16.0488	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:123:123,0:123:4379:0:0:0,-37.0267,-394.286	0/0:72:72,0:72:2550:0:0:0,-21.6742,-229.751	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.009	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.665	0/1:55:26,29:26:936:29:1040:-77.3577,0,-68.0028	0/1:80:40,40:40:1436:40:1431:-105.004,0,-105.455	0/1:66:34,32:34:1202:32:1148:-83.7619,0,-88.6162	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:34:20,14:20:720:14:500:-35.1012,0,-54.8938	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:203:84,119:84:2993:119:4261:-322.559,0,-208.492	0/1:128:60,68:60:2132:68:2428:-180.244,0,-153.617	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:64:27,37:27:968:37:1301:-98.1233,0,-68.1714	0/0:83:83,0:83:2955:0:0:0,-24.9855,-266.184	0/0:65:64,0:64:2279:0:0:0,-19.2659,-205.012	0/0:176:176,0:176:6231:0:0:0,-52.9813,-560.889	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:113:113,0:113:3994:0:0:0,-34.0164,-359.654	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:64:36,28:36:1284:28:1004:-71.4099,0,-96.5975	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:14:11,3:11:378:3:99:-5.02216,0,-30.1347	0/0:148:148,0:148:5259:0:0:0,-44.5524,-473.451	0/1:40:16,24:16:564:24:852:-64.9592,0,-39.0491	0/1:42:15,27:15:528:27:957:-73.8015,0,-35.2081	.:.:.:.:.:.:.:.	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:104:104,0:104:3654:0:0:0,-31.3071,-329.064	0/0:62:62,0:62:2206:0:0:0,-18.6639,-198.804	0/1:57:29,28:29:1036:28:998:-72.9765,0,-76.3952	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/1:93:41,52:41:1447:52:1835:-137.434,0,-102.529	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.471	0/0:62:62,0:62:2179:0:0:0,-18.6639,-196.374	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:108:108,0:108:3810:0:0:0,-32.5112,-343.096	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:102:55,47:55:1956:47:1668:-119.702,0,-145.611	0/1:44:22,22:22:783:22:771:-56.4642,0,-57.5476	0/1:9:5,4:5:176:4:140:-10.2353,0,-13.4757	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:56:56,0:56:1983:0:0:0,-16.8577,-178.744	0/1:88:48,40:48:1707:40:1424:-101.967,0,-127.424	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:81:81,0:81:2877:0:0:0,-24.3834,-259.166	0/1:107:51,56:51:1807:56:1992:-147.344,0,-130.701	0/0:54:51,3:51:1807:3:108:0,-6.18045,-152.836	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/1:53:30,23:30:1068:23:813:-57.5354,0,-80.4775	0/0:76:75,1:75:2668:1:36:0,-19.28,-236.768	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:64:64,0:64:2275:0:0:0,-19.2659,-205.012	0/1:34:16,18:16:576:18:631:-46.8807,0,-41.94	0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1752	0/0:64:64,0:64:2262:0:0:0,-19.2659,-203.614	0/1:108:58,50:58:2039:50:1775:-127.521,0,-151.268	0/0:60:60,0:60:2130:0:0:0,-18.0618,-191.967	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/0:79:79,0:79:2774:0:0:0,-23.7814,-249.901	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:83:83,0:83:2943:0:0:0,-24.9855,-265.105	0/1:96:47,48:47:1671:48:1712:-125.554,0,-121.866	0/1:214:120,94:120:4238:94:3351:-237.387,0,-317.184	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.99	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:44:27,17:27:972:17:612:-42.1681,0,-74.5526	0/1:128:63,65:63:2235:65:2336:-171.966,0,-162.882	0/1:25:13,12:13:468:12:423:-30.8793,0,-34.9339	0/0:70:70,0:70:2483:0:0:0,-21.0721,-223.724	0/0:85:85,0:85:3028:0:0:0,-25.5875,-272.752	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:71:37,34:37:1320:34:1211:-87.922,0,-97.7288	0/1:56:15,41:15:532:41:1471:-115.828,0,-31.3554	0/0:64:64,0:64:2267:0:0:0,-19.2659,-204.293	0/0:133:132,1:132:4704:1:36:0,-36.4387,-419.921
chr02	2912595	.	T	C	27045.9	PASS	AB=0.503608;ABP=3.37074;AC=34;AF=0.182796;AN=186;AO=1617;CIGAR=1X;DP=8939;DPB=8939;DPRA=1.15754;EPP=3514.28;EPPR=15850.5;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=59.9939;NS=93;NUMALT=1;ODDS=4.82543;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57699;QR=261503;RO=7322;RPL=1617;RPP=3514.28;RPPR=15850.5;RPR=0;RUN=1;SAF=0;SAP=3514.28;SAR=1617;SRF=0;SRP=15902.5;SRR=7322;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:143:142,1:142:5021:1:36:0,-39.449,-448.436	0/0:96:96,0:96:3354:0:0:0,-28.8989,-302.072	0/1:133:59,74:59:2094:74:2656:-199.249,0,-148.689	0/1:49:24,25:24:845:25:900:-66.5705,0,-61.6166	0/1:72:42,30:42:1504:30:1061:-74.1252,0,-113.98	0/0:124:124,0:124:4430:0:0:0,-37.3277,-398.824	0/0:168:168,0:168:6002:0:0:0,-50.573,-540.283	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/0:141:141,0:141:5042:0:0:0,-42.4452,-453.922	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.102	0/0:79:79,0:79:2799:0:0:0,-23.7814,-252.146	0/0:97:97,0:97:3428:0:0:0,-29.1999,-308.73	0/1:80:35,45:35:1245:45:1601:-120.296,0,-88.2703	0/1:97:55,42:55:1980:42:1508:-106.815,0,-149.275	0/1:69:32,37:32:1152:37:1332:-99.4113,0,-83.2191	0/0:77:76,1:76:2691:1:36:0,-19.581,-238.832	0/1:77:35,42:35:1260:42:1500:-112.115,0,-90.5262	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:274:137,137:137:4920:137:4909:-359.477,0,-360.467	0/1:130:62,68:62:2232:68:2436:-180.361,0,-162.01	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:128:125,3:125:4492:3:108:0,-28.4567,-394.372	0/1:83:55,28:55:1980:28:998:-65.1487,0,-153.489	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:379:378,1:378:13482:1:36:0,-110.492,-1209.57	0/0:157:157,0:157:5617:0:0:0,-47.2617,-505.65	0/0:50:49,1:49:1760:1:36:0,-11.4532,-155.086	0/0:133:133,0:133:4728:0:0:0,-40.037,-425.675	0/0:101:101,0:101:3602:0:0:0,-30.404,-324.384	0/1:110:54,56:54:1944:56:2001:-147.248,0,-142.123	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:258:258,0:258:9209:0:0:0,-77.6657,-828.775	0/1:133:65,68:65:2268:68:2425:-178.467,0,-164.34	0/1:87:45,42:45:1571:42:1512:-110.185,0,-115.485	.:.:.:.:.:.:.:.	0/0:127:127,0:127:4556:0:0:0,-38.2308,-410.205	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:106:106,0:106:3793:0:0:0,-31.9092,-341.566	0/0:127:125,2:125:4488:2:72:0,-31.3941,-397.251	0/1:70:33,37:33:1184:37:1301:-96.3172,0,-85.7962	0/0:91:91,0:91:3257:0:0:0,-27.3937,-293.349	0/1:92:55,37:55:1976:37:1332:-92.4876,0,-150.42	0/0:134:134,0:134:4786:0:0:0,-40.338,-430.894	0/0:137:137,0:137:4875:0:0:0,-41.2411,-438.9	0/0:134:134,0:134:4794:0:0:0,-40.338,-431.613	0/0:150:150,0:150:5381:0:0:0,-45.1545,-484.418	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:102:102,0:102:3649:0:0:0,-30.7051,-328.613	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:51:23,28:23:824:28:1008:-75.6838,0,-59.1308	0/1:69:38,31:38:1364:31:1089:-77.5449,0,-102.29	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4168	0/0:69:69,0:69:2450:0:0:0,-20.7711,-220.752	0/1:125:58,67:58:2088:67:2408:-179.347,0,-150.561	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:206:206,0:206:7303:0:0:0,-62.0122,-657.317	0/1:173:74,99:74:2645:99:3507:-263.759,0,-186.217	0/0:75:74,1:74:2641:1:36:0,-18.979,-234.337	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:200:103,97:103:3670:97:3458:-251.224,0,-270.295	0/0:102:102,0:102:3604:0:0:0,-30.7051,-324.563	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8446	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:94:55,39:55:1965:39:1400:-98.0024,0,-148.826	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.157	0/1:58:30,28:30:1080:28:973:-70.4181,0,-80.0535	0/0:165:165,0:165:5905:0:0:0,-49.6699,-531.558	0/0:176:176,0:176:6287:0:0:0,-52.9813,-565.919	0/0:89:89,0:89:3177:0:0:0,-26.7917,-286.153	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.39	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.989	0/1:95:45,50:45:1612:50:1800:-133.684,0,-116.772	0/1:184:95,89:95:3416:89:3181:-231.123,0,-252.263	0/0:110:110,0:110:3941:0:0:0,-33.1133,-354.253	0/0:103:103,0:103:3685:0:0:0,-31.0061,-331.851	0/1:127:66,61:66:2376:61:2177:-157.964,0,-175.867	0/1:177:76,101:76:2702:101:3548:-266.245,0,-190.139	0/1:47:25,22:25:885:22:788:-57.0964,0,-65.8181	0/0:90:90,0:90:3221:0:0:0,-27.0927,-290.11	0/0:100:100,0:100:3570:0:0:0,-30.103,-321.505	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:106:54,52:54:1940:52:1868:-136.49,0,-142.967	0/1:90:28,62:28:1008:62:2194:-170.63,0,-63.9437	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/0:137:137,0:137:4905:0:0:0,-41.2411,-441.599
chr02	2919637	.	C	A	19239.3	PASS	AB=0.531814;ABP=21.5245;AC=33;AF=0.177419;AN=186;AO=1130;CIGAR=1X;DP=5913;DPB=5913;DPRA=1.13488;EPP=2456.77;EPPR=10389.2;GTI=0;LEN=1;MEANALT=1;MQM=59.9982;MQMR=59.9868;NS=93;NUMALT=1;ODDS=1.15937;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40520;QR=168618;RO=4783;RPL=0;RPP=2456.77;RPPR=10389.2;RPR=1130;RUN=1;SAF=1130;SAP=2456.77;SAR=0;SRF=4783;SRP=10389.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1596:0:0:0,-13.5463,-143.93	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:91:91,0:91:3213:0:0:0,-27.3937,-289.394	0/1:199:94,105:94:3302:105:3756:-278.335,0,-237.495	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/1:15:6,9:6:208:9:324:-24.9904,0,-14.5436	0/0:55:55,0:55:1936:0:0:0,-16.5566,-174.517	0/0:97:97,0:97:3423:0:0:0,-29.1999,-308.287	0/0:83:83,0:83:2907:0:0:0,-24.9855,-261.869	0/0:54:54,0:54:1904:0:0:0,-16.2556,-171.638	0/0:51:51,0:51:1791:0:0:0,-15.3525,-161.472	0/0:77:77,0:77:2728:0:0:0,-23.1793,-245.765	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/1:63:35,28:35:1209:28:1004:-71.711,0,-90.1457	0/1:60:33,27:33:1172:27:972:-69.7361,0,-87.7257	0/1:68:34,34:34:1203:34:1220:-89.6368,0,-88.105	0/0:33:33,0:33:1164:0:0:0,-9.93399,-105.067	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:67:27,40:27:944:40:1425:-108.376,0,-65.1051	0/1:56:31,25:31:1096:25:885:-63.1088,0,-82.0923	0/0:77:77,0:77:2678:0:0:0,-23.1793,-241.266	0/0:68:68,0:68:2398:0:0:0,-20.47,-216.077	0/1:34:23,11:23:812:11:396:-25.7477,0,-63.1659	0/0:27:27,0:27:939:0:0:0,-8.12781,-84.8227	0/0:180:180,0:180:6379:0:0:0,-54.1854,-574.208	0/0:100:100,0:100:3523:0:0:0,-30.103,-317.284	0/0:28:28,0:28:983:0:0:0,-8.42884,-88.7825	0/0:195:195,0:195:6889:0:0:0,-58.7008,-620.089	0/0:85:85,0:85:3003:0:0:0,-25.5875,-270.504	0/1:81:44,37:44:1555:37:1317:-94.4464,0,-115.858	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/1:12:3,9:3:100:9:324:-25.8935,0,-5.71808	.:.:.:.:.:.:.:.	0/0:146:146,0:146:5132:0:0:0,-43.9504,-462.031	0/1:103:46,57:46:1624:57:2040:-152.866,0,-115.443	0/1:27:13,14:13:456:14:504:-37.5703,0,-33.2454	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:84:84,0:84:2972:0:0:0,-25.2865,-267.715	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.414	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/1:60:25,35:25:884:35:1260:-95.6437,0,-61.8166	0/0:48:48,0:48:1688:0:0:0,-14.4494,-152.206	0/1:56:27,29:27:933:29:1040:-77.0567,0,-67.4229	0/0:137:136,1:136:4747:1:36:0,-37.6428,-423.801	0/0:100:100,0:100:3531:0:0:0,-30.103,-318.003	0/0:73:73,0:73:2592:0:0:0,-21.9752,-233.53	0/0:48:48,0:48:1684:0:0:0,-14.4494,-151.846	0/1:4:3,1:3:100:1:36:-2.39415,0,-8.12632	0/0:60:60,0:60:2085:0:0:0,-18.0618,-187.919	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:117:56,61:56:1988:61:2188:-161.965,0,-143.974	0/1:42:24,18:24:852:18:644:-45.6473,0,-64.3571	0/1:3:2,1:2:72:1:21:-1.19686,0,-5.93363	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6551	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:77:30,47:30:1072:47:1688:-129.028,0,-73.6131	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:158:157,1:157:5516:1:36:0,-43.9645,-492.981	0/1:106:44,62:44:1544:62:2232:-169.234,0,-107.343	0/0:45:41,4:41:1441:4:144:0,-0.232732,-116.67	0/0:67:66,1:66:2336:1:36:0,-16.5707,-206.902	0/1:149:62,87:62:2200:87:3124:-236.532,0,-153.412	0/0:74:74,0:74:2607:0:0:0,-22.2762,-234.88	0/0:26:26,0:26:905:0:0:0,-7.82678,-81.7626	0/0:29:29,0:29:1001:0:0:0,-8.72987,-90.3978	0/1:31:13,18:13:460:18:648:-49.3195,0,-32.4034	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:83:83,0:83:2940:0:0:0,-24.9855,-264.836	0/1:63:28,35:28:980:35:1260:-94.7402,0,-69.548	0/0:129:128,1:128:4536:1:36:0,-35.2346,-404.188	0/0:121:121,0:121:4245:0:0:0,-36.4246,-382.237	0/0:42:41,1:41:1444:1:36:0,-9.04498,-126.658	0/0:83:83,0:83:2915:0:0:0,-24.9855,-262.588	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:85:85,0:85:3017:0:0:0,-25.5875,-271.761	0/1:88:28,60:28:987:60:2156:-167.816,0,-62.6524	0/1:121:62,59:62:2188:59:2120:-154.644,0,-160.762	0/0:44:43,1:43:1507:1:36:0,-9.64704,-132.324	0/0:50:50,0:50:1762:0:0:0,-15.0515,-158.862	0/1:39:21,18:21:713:18:648:-46.9117,0,-52.7444	0/1:113:67,46:67:2371:46:1656:-115.312,0,-179.632	0/1:18:4,14:4:144:14:504:-40.2796,0,-7.89508	0/0:69:69,0:69:2418:0:0:0,-20.7711,-217.79	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.256	0/0:29:29,0:29:1014:0:0:0,-8.72987,-91.57	0/1:110:50,60:50:1771:60:2156:-161.194,0,-126.559	0/1:79:30,49:30:1047:49:1748:-133.823,0,-70.7579	0/0:83:83,0:83:2920:0:0:0,-24.9855,-263.039	0/0:71:71,0:71:2515:0:0:0,-21.3731,-226.603
chr02	2935855	.	T	C	19642.6	PASS	AB=0.475586;ABP=16.0521;AC=35;AF=0.18617;AN=188;AO=1205;CIGAR=1X;DP=7564;DPB=7564;DPRA=0.87003;EPP=2619.63;EPPR=13804.9;GTI=2;LEN=1;MEANALT=1;MQM=58.9942;MQMR=59.9108;NS=94;NUMALT=1;ODDS=4.13895;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43129;QR=227368;RO=6356;RPL=0;RPP=2619.63;RPPR=13804.9;RPR=1205;RUN=1;SAF=1205;SAP=2619.63;SAR=0;SRF=6356;SRP=13804.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:137:137,0:137:4905:0:0:0,-41.2411,-441.599	0/1:194:84,110:84:2985:110:3937:-295.847,0,-210.474	0/1:35:25,10:25:900:10:360:-22.163,0,-70.785	0/1:40:24,16:24:860:16:568:-39.4103,0,-65.6806	0/0:68:67,1:67:2400:1:36:0,-16.8718,-212.659	0/0:133:133,0:133:4719:0:0:0,-40.037,-424.858	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.116	0/0:112:112,0:112:3993:0:0:0,-33.7154,-359.549	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.233	0/1:43:26,17:26:932:17:612:-42.4225,0,-71.25	0/1:83:37,46:37:1328:46:1635:-122.445,0,-94.8367	0/1:62:31,31:31:1116:31:1116:-82.0347,0,-82.0863	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:36:22,14:22:792:14:504:-34.8576,0,-60.7686	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:57:37,20:37:1324:20:716:-47.59,0,-102.303	0/1:117:62,55:62:2224:55:1976:-142.831,0,-165.204	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:99:99,0:99:3533:0:0:0,-29.802,-318.178	0/1:53:20,33:20:712:33:1180:-90.5479,0,-48.4517	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.663	0/0:262:262,0:262:9385:0:0:0,-78.8699,-844.453	0/0:193:193,0:193:6932:0:0:0,-58.0988,-623.941	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.315	0/0:71:70,0:70:2512:0:0:0,-21.0721,-226.12	0/1:85:53,32:53:1881:32:1152:-78.3561,0,-143.942	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:10:5,5:5:180:5:180:-13.496,0,-13.5418	0/1:24:14,10:14:489:10:356:-25.1099,0,-37.1142	0/0:191:191,0:191:6825:0:0:0,-57.4967,-614.317	0/1:109:52,57:52:1848:57:2052:-152.094,0,-133.788	0/1:66:42,24:42:1504:24:856:-56.856,0,-115.787	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:143:143,0:143:5144:0:0:0,-43.0473,-463.098	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.687	0/1:73:28,45:28:1004:45:1612:-123.286,0,-68.5617	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.861	0/1:69:31,38:31:1112:38:1364:-102.245,0,-79.6203	0/0:184:184,0:184:6585:0:0:0,-55.3895,-592.729	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:102:102,0:102:3618:0:0:0,-30.7051,-325.822	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.605	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.87105	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.15	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:121:56,65:56:2004:65:2320:-172.501,0,-144.209	0/1:56:24,32:24:860:32:1152:-87.1279,0,-60.8635	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:16:6,10:6:216:10:360:-27.8825,0,-14.974	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:93:48,45:48:1716:45:1616:-117.674,0,-126.73	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.474	0/1:121:70,51:70:2474:51:1830:-128.474,0,-186.487	0/0:50:46,4:46:1637:4:144:0,-1.78391,-134.302	0/0:90:90,0:90:3209:0:0:0,-27.0927,-289.032	0/1:132:63,69:63:2252:69:2438:-179.694,0,-163.206	0/0:124:123,1:123:4397:1:36:0,-33.7294,-392.303	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/1:63:35,28:35:1260:28:1008:-72.0633,0,-94.7383	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/0:99:99,0:99:3536:0:0:0,-29.802,-318.446	0/1:99:47,52:47:1688:52:1868:-138.385,0,-122.36	0/0:125:124,1:124:4436:1:36:0,-34.0802,-395.863	0/0:156:156,0:156:5572:0:0:0,-46.9607,-501.605	0/0:91:91,0:91:3218:0:0:0,-27.3937,-289.842	0/0:120:120,0:120:4289:0:0:0,-36.1236,-385.917	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/0:98:97,0:97:3492:0:0:0,-29.1999,-314.275	0/1:52:30,22:30:1050:22:792:-55.8587,0,-79.1527	0/1:186:129,57:129:4605:57:2041:-127.898,0,-358.619	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.941	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.901	0/1:54:29,25:29:1036:25:896:-64.633,0,-77.2867	0/1:140:80,60:80:2860:60:2136:-149.851,0,-215.493	0/1:21:13,8:13:468:8:288:-19.945,0,-36.138	0/0:70:70,0:70:2501:0:0:0,-21.0721,-224.753	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.383	0/1:110:56,54:56:2000:54:1923:-139.402,0,-147.159	0/1:80:28,52:28:1004:52:1853:-142.173,0,-66.5935	0/0:110:109,0:109:3916:0:0:0,-32.8123,-352.372	0/0:123:123,0:123:4404:0:0:0,-37.0267,-396.533
chr02	2935931	.	C	G	171547	PASS	AB=0.499085;ABP=3.03415;AC=153;AF=0.81383;AN=188;AO=7826;CIGAR=1X;DP=9487;DPB=9487;DPRA=102;EPP=16565.4;EPPR=3429.32;GTI=2;LEN=1;MEANALT=1.07527;MQM=54.0555;MQMR=59.5668;NS=94;NUMALT=1;ODDS=1.60157;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278895;QR=59043;RO=1653;RPL=7776;RPP=16565.4;RPPR=3429.32;RPR=50;RUN=1;SAF=0;SAP=16997;SAR=7826;SRF=0;SRP=3592.45;SRR=1653;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:928:-82.4813,-7.82678,0	1/1:181:0,180:0:0:180:6408:-573.323,-54.1854,0	1/1:66:0,66:0:0:66:2345:-209.924,-19.868,0	0/1:224:99,125:99:3560:125:4455:-332.937,0,-253.161	0/1:69:34,35:34:1204:35:1256:-92.125,0,-87.8948	0/1:41:19,22:19:676:22:792:-58.8899,0,-48.8176	1/1:157:3,154:3:108:154:5495:-483.585,-37.1865,0	1/1:92:0,92:0:0:92:3277:-293.386,-27.6948,0	1/1:88:0,88:0:0:88:3119:-278.069,-26.4906,0	1/1:143:0,143:0:0:143:5103:-458.71,-43.0473,0	1/1:47:0,47:0:0:47:1683:-151.562,-14.1484,0	1/1:87:0,87:0:0:87:3104:-278.551,-26.1896,0	1/1:79:0,79:0:0:79:2822:-253.36,-23.7814,0	0/1:77:37,40:37:1328:40:1436:-105.246,0,-96.6383	0/1:70:36,34:36:1280:34:1216:-88.5919,0,-93.9385	0/1:64:35,29:35:1256:29:1040:-74.3887,0,-94.0559	1/1:88:0,88:0:0:88:3144:-281.889,-26.4906,0	0/1:91:37,54:37:1324:54:1905:-143.462,0,-92.0665	1/1:40:0,40:0:0:40:1418:-127.391,-12.0412,0	0/1:207:103,104:103:3671:104:3700:-269.969,0,-267.976	0/1:151:83,68:83:2954:68:2436:-173.354,0,-220.6	1/1:75:0,75:0:0:75:2684:-241.275,-22.5773,0	1/1:98:1,97:1:36:97:3485:-309.569,-25.9027,0	0/1:160:74,86:74:2640:86:3038:-224.052,0,-189.667	1/1:71:0,71:0:0:71:2501:-224.467,-21.3731,0	1/1:335:0,335:0:0:335:11936:-1072.7,-100.845,0	1/1:204:0,204:0:0:204:7234:-648.659,-61.4101,0	1/1:58:0,58:0:0:58:2066:-185.802,-17.4597,0	1/1:276:0,276:0:0:276:9785:-879.366,-83.0843,0	1/1:120:0,120:0:0:120:4297:-385.72,-36.1236,0	0/1:123:59,64:59:2097:64:2255:-165.594,0,-151.958	1/1:3:0,3:0:0:3:108:-9.93145,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:5,2:5:180:2:72:-4.71232,0,-14.4449	1/1:192:0,191:0:0:191:6797:-609.99,-57.4967,0	0/1:123:75,47:75:2681:47:1688:-114.695,0,-204.422	0/1:51:19,32:19:672:32:1148:-87.7692,0,-45.451	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:161:0,159:0:0:159:5680:-508.237,-47.8638,0	1/1:51:0,51:0:0:51:1798:-161.64,-15.3525,0	1/1:136:0,136:0:0:136:4842:-433.807,-40.9401,0	1/1:97:0,97:0:0:97:3484:-312.967,-29.1999,0	0/1:81:38,43:38:1360:43:1531:-113.1,0,-98.3139	1/1:104:0,104:0:0:104:3689:-331.462,-31.3071,0	0/1:158:89,69:89:3162:69:2478:-174.144,0,-237.119	1/1:189:2,187:2:72:187:6676:-593.108,-50.0604,0	1/1:135:0,135:0:0:135:4795:-430.573,-40.6391,0	1/1:140:0,140:0:0:140:5016:-450.176,-42.1442,0	1/1:129:0,129:0:0:129:4610:-414.497,-38.8329,0	0/1:5:2,3:2:72:3:108:-8.56041,0,-5.33157	1/1:95:0,95:0:0:95:3390:-303.993,-28.5979,0	1/1:73:0,73:0:0:73:2599:-233.976,-21.9752,0	1/1:14:0,14:0:0:14:504:-45.5573,-4.21442,0	0/1:212:117,95:117:4192:95:3409:-241.73,0,-312.937	0/1:42:15,27:15:536:27:944:-71.9058,0,-35.9139	0/1:5:1,4:1:36:4:144:-11.8047,0,-2.09312	0/1:17:5,12:5:180:12:428:-33.6198,0,-11.4327	1/1:68:0,68:0:0:68:2415:-217.161,-20.47,0	0/1:76:42,34:42:1508:34:1219:-86.8178,0,-113.05	1/1:5:0,4:0:0:4:144:-12.9444,-1.20412,0	1/1:340:0,340:0:0:340:12126:-1089.02,-102.35,0	0/1:209:116,93:116:4153:93:3332:-236.569,0,-311.025	1/1:93:3,90:3:104:90:3203:-276.981,-18.293,0	1/1:139:0,139:0:0:139:4979:-447.501,-41.8432,0	0/1:147:55,91:55:1960:91:3237:-246.86,0,-132.428	1/1:110:1,109:1:36:109:3905:-347.368,-29.515,0	1/1:24:0,24:0:0:24:849:-76.3605,-7.22472,0	1/1:101:2,99:2:72:99:3505:-307.829,-23.5673,0	0/1:80:42,38:42:1508:38:1356:-98.0648,0,-111.929	1/1:31:0,31:0:0:31:1099:-99.1494,-9.33193,0	1/1:62:0,62:0:0:62:2196:-196.085,-18.6639,0	0/1:74:42,32:42:1504:32:1148:-80.6974,0,-113.332	1/1:128:0,128:0:0:128:4522:-404.521,-38.5318,0	1/1:165:0,165:0:0:165:5890:-529.421,-49.67,0	1/1:88:0,88:0:0:88:3132:-281.214,-26.4906,0	1/1:165:0,165:0:0:165:5899:-527.513,-49.67,0	1/1:11:0,11:0:0:11:396:-35.7034,-3.31133,0	1/1:205:0,205:0:0:205:7320:-657.011,-61.7112,0	0/1:69:34,35:34:1220:35:1235:-90.132,0,-89.3243	0/1:189:89,100:89:3188:100:3563:-262.727,0,-230.238	1/1:112:0,111:0:0:111:3956:-354.773,-33.4143,0	1/1:68:0,68:0:0:68:2409:-216.692,-20.47,0	0/1:115:55,60:55:1976:60:2138:-157.832,0,-143.34	0/1:155:77,78:77:2718:78:2782:-202.83,0,-198.192	0/1:36:18,18:18:644:18:635:-46.2929,0,-47.4119	1/1:72:0,72:0:0:72:2580:-231.159,-21.6742,0	1/1:85:0,85:0:0:85:3051:-273.723,-25.5876,0	1/1:22:0,22:0:0:22:780:-69.3725,-6.62266,0	0/1:60:32,28:32:1135:28:991:-71.2095,0,-84.3913	0/1:90:56,34:56:2004:34:1216:-82.3069,0,-153.536	1/1:147:0,147:0:0:147:5226:-468.525,-44.2514,0	1/1:110:0,110:0:0:110:3908:-351.177,-33.1133,0
chr02	2935938	.	T	A	28236.6	PASS	AB=0.503939;ABP=3.45512;AC=35;AF=0.18617;AN=188;AO=1678;CIGAR=1X;DP=9498;DPB=9498;DPRA=1.07221;EPP=3638.06;EPPR=16886.3;GTI=2;LEN=1;MEANALT=1;MQM=59.5155;MQMR=54.0575;NS=94;NUMALT=1;ODDS=0.878491;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60065;QR=278728;RO=7815;RPL=1677;RPP=3638.06;RPPR=16886.3;RPR=1;RUN=1;SAF=0;SAP=3646.74;SAR=1678;SRF=0;SRP=16973.1;SRR=7815;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:972:0:0:0,-8.12781,-86.4232	0/0:179:179,0:179:6379:0:0:0,-53.8844,-570.691	0/0:65:65,0:65:2317:0:0:0,-19.5669,-207.34	0/1:221:126,95:126:4505:95:3398:-239.496,0,-338.274	0/1:69:34,35:34:1216:35:1252:-92.214,0,-88.5336	0/1:41:22,19:22:773:19:680:-49.1787,0,-57.1921	0/0:152:149,3:149:5321:3:108:0,-35.6814,-468.047	0/0:91:91,0:91:3253:0:0:0,-27.3937,-291.047	0/0:89:89,0:89:3204:0:0:0,-26.7917,-285.642	0/0:145:145,0:145:5170:0:0:0,-43.6493,-464.654	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.651	0/0:90:89,0:89:3170:0:0:0,-26.7917,-283.933	0/0:79:79,0:79:2794:0:0:0,-23.7814,-250.734	0/1:80:41,39:41:1476:39:1391:-101.397,0,-107.931	0/1:70:35,35:35:1245:35:1256:-92.2732,0,-91.1951	0/1:67:29,38:29:1044:38:1368:-103.193,0,-73.8433	0/0:87:87,0:87:3124:0:0:0,-26.1896,-279.306	0/1:90:53,37:53:1893:37:1328:-92.7268,0,-142.539	0/0:37:37,0:37:1304:0:0:0,-11.1381,-116.896	0/1:207:105,102:105:3742:102:3651:-266.311,0,-273.63	0/1:156:70,86:70:2512:86:3069:-229.417,0,-178.613	0/0:75:75,0:75:2700:0:0:0,-22.5772,-242.66	0/0:98:97,1:97:3446:1:36:0,-25.9027,-306.134	0/1:163:87,76:87:3120:76:2728:-196.672,0,-230.414	0/0:71:71,0:71:2529:0:0:0,-21.3731,-226.785	0/0:329:329,0:329:11774:0:0:0,-99.0389,-1058.23	0/0:206:206,0:206:7344:0:0:0,-62.0122,-658.014	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.005	0/0:273:272,1:272:9731:1:36:0,-78.6451,-870.954	0/0:119:117,0:117:4125:0:0:0,-35.2205,-370.338	0/1:124:63,61:63:2256:61:2184:-159.301,0,-164.695	0/0:3:3,0:3:89:0:0:0,-0.90309,-8.2405	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2947	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.71232	0/0:193:193,0:193:6932:0:0:0,-58.0988,-622.537	0/1:121:46,75:46:1652:75:2685:-205.438,0,-112.173	0/1:54:32,22:32:1137:22:788:-54.9801,0,-85.8729	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/0:162:162,0:162:5741:0:0:0,-48.7669,-513.995	0/0:49:49,0:49:1745:0:0:0,-14.7505,-156.868	0/0:130:130,0:130:4631:0:0:0,-39.1339,-414.362	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.047	0/1:84:44,40:44:1546:40:1440:-104.608,0,-113.59	0/0:101:101,0:101:3632:0:0:0,-30.404,-326.327	0/1:157:71,86:71:2495:86:3076:-229.686,0,-176.096	0/0:191:189,2:189:6746:2:72:0,-50.6625,-599.399	0/0:135:135,0:135:4768:0:0:0,-40.639,-428.147	0/0:140:140,0:140:5005:0:0:0,-42.1442,-449.75	0/0:132:132,0:132:4684:0:0:0,-39.736,-421.04	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.62767	0/0:94:93,0:93:3332:0:0:0,-27.9958,-298.658	0/0:73:73,0:73:2605:0:0:0,-21.9752,-234.513	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.5573	0/1:215:95,120:95:3397:120:4307:-322.656,0,-239.794	0/1:42:27,15:27:972:15:540:-36.2756,0,-73.9366	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4363	0/1:17:12,5:12:413:5:180:-11.4327,0,-32.2921	0/0:72:72,0:72:2535:0:0:0,-21.6742,-227.885	0/1:78:35,43:35:1260:43:1540:-115.326,0,-89.8776	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5401	0/0:339:339,0:339:11990:0:0:0,-102.049,-1076.76	0/1:210:94,116:94:3365:116:4138:-309.369,0,-239.128	0/0:91:88,3:88:3138:3:108:0,-17.3186,-270.445	0/0:137:137,0:137:4855:0:0:0,-41.2411,-436.283	0/1:146:91,55:91:3234:55:1965:-133.168,0,-245.842	0/0:110:109,1:109:3893:1:36:0,-29.515,-346.218	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.6078	0/0:103:101,2:101:3590:2:72:0,-24.1694,-315.413	0/1:83:39,44:39:1396:44:1574:-116.961,0,-100.758	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.318	0/0:62:62,0:62:2213:0:0:0,-18.6639,-198.034	0/1:72:31,41:31:1112:41:1472:-111.056,0,-78.0657	0/0:127:127,0:127:4526:0:0:0,-38.2308,-404.276	0/0:167:167,0:167:5989:0:0:0,-50.272,-538.224	0/0:88:88,0:88:3153:0:0:0,-26.4906,-282.808	0/0:165:165,0:165:5889:0:0:0,-49.6699,-526.44	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.7034	0/0:204:204,0:204:7174:0:0:0,-61.4101,-643.721	0/1:69:34,35:34:1205:35:1260:-92.9181,0,-87.6014	0/1:192:102,90:102:3634:90:3200:-230.257,0,-268.751	0/0:111:111,0:111:3984:0:0:0,-33.4143,-357.824	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.231	0/1:115:60,55:60:2152:55:1976:-143.418,0,-159.017	0/1:159:77,82:77:2764:82:2940:-216.961,0,-199.935	0/1:34:16,18:16:572:18:640:-47.6526,0,-41.245	0/0:75:75,0:75:2688:0:0:0,-22.5772,-239.748	0/0:89:88,1:88:3156:1:25:0,-24.3128,-280.591	0/0:22:21,0:21:741:0:0:0,-6.32163,-66.1038	0/1:57:25,32:25:896:32:1148:-86.4656,0,-63.6147	0/1:91:33,58:33:1184:58:2078:-159.893,0,-79.1285	0/0:146:146,0:146:5179:0:0:0,-43.9504,-464.355	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.064
chr02	2935939	.	T	A	170484	PASS	AB=0.496337;ABP=3.3921;AC=153;AF=0.822581;AN=186;AO=7813;CIGAR=1X;DP=9475;DPB=9475;DPRA=0;EPP=16882;EPPR=3603.32;GTI=1;LEN=1;MEANALT=1;MQM=54.0404;MQMR=59.5397;NS=93;NUMALT=1;ODDS=0.121706;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279738;QR=59213;RO=1662;RPL=7803;RPP=16882;RPPR=3603.32;RPR=10;RUN=1;SAF=0;SAP=16968.7;SAR=7813;SRF=0;SRP=3612;SRR=1662;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:891:-80.1089,-7.52575,0	1/1:180:0,180:0:0:180:6447:-576.931,-54.1854,0	1/1:66:0,66:0:0:66:2357:-210.912,-19.868,0	0/1:221:97,124:97:3480:124:4436:-332.104,0,-246.872	0/1:68:35,33:35:1248:33:1180:-85.6319,0,-92.1548	0/1:42:19,23:19:676:23:824:-61.4633,0,-48.5214	1/1:156:3,153:3:108:153:5487:-482.874,-36.8855,0	1/1:92:0,92:0:0:92:3288:-294.226,-27.6948,0	1/1:88:0,88:0:0:88:3138:-280.025,-26.4906,0	1/1:145:0,145:0:0:145:5193:-466.709,-43.6494,0	1/1:47:0,47:0:0:47:1683:-151.56,-14.1484,0	1/1:87:0,87:0:0:87:3111:-278.832,-26.1896,0	1/1:78:0,78:0:0:78:2800:-251.351,-23.4803,0	0/1:79:38,41:38:1360:41:1472:-107.88,0,-98.91	0/1:70:36,34:36:1292:34:1220:-88.9518,0,-94.7325	0/1:63:36,27:36:1273:27:968:-68.2254,0,-95.8826	1/1:89:0,89:0:0:89:3168:-283.916,-26.7917,0	0/1:92:39,53:39:1377:53:1900:-142.424,0,-96.5278	1/1:40:0,40:0:0:40:1440:-129.054,-12.0412,0	0/1:205:102,103:102:3656:103:3696:-270.035,0,-267.227	0/1:153:83,70:83:2945:70:2504:-178.8,0,-219.183	1/1:73:0,73:0:0:73:2616:-235.239,-21.9752,0	1/1:99:1,98:1:36:98:3510:-311.823,-26.2037,0	0/1:160:73,87:73:2628:87:3124:-231.672,0,-188.588	1/1:68:0,68:0:0:68:2431:-218.159,-20.47,0	1/1:336:0,336:0:0:336:12022:-1080.12,-101.146,0	1/1:204:0,204:0:0:204:7312:-655.309,-61.4101,0	1/1:58:0,58:0:0:58:2060:-185.277,-17.4597,0	1/1:277:0,277:0:0:277:9926:-891.791,-83.3853,0	1/1:120:0,120:0:0:120:4308:-386.696,-36.1236,0	0/1:120:60,60:60:2144:60:2160:-158.062,0,-156.905	1/1:3:0,3:0:0:3:108:-9.93145,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	.:.:.:.:.:.:.:.	0/1:7:5,2:5:180:2:72:-4.71232,0,-14.4449	1/1:193:0,193:0:0:193:6910:-620.563,-58.0988,0	0/1:123:77,46:77:2726:46:1648:-111.228,0,-208.523	0/1:55:23,32:23:820:32:1152:-86.9172,0,-57.5568	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:159:0,159:0:0:159:5694:-510.699,-47.8638,0	1/1:50:0,50:0:0:50:1800:-161.803,-15.0515,0	1/1:134:0,134:0:0:134:4795:-429.102,-40.338,0	1/1:98:0,98:0:0:98:3502:-314.573,-29.5009,0	0/1:83:39,44:39:1400:44:1584:-117.26,0,-101.31	1/1:103:0,103:0:0:103:3680:-330.645,-31.0061,0	0/1:153:86,67:86:3035:67:2412:-169.81,0,-227.202	1/1:190:2,188:2:68:188:6738:-599.017,-50.7405,0	1/1:132:0,132:0:0:132:4719:-423.38,-39.736,0	1/1:141:0,141:0:0:141:5036:-452.459,-42.4452,0	1/1:132:0,132:0:0:132:4728:-425.065,-39.736,0	0/1:4:1,3:1:36:3:108:-8.86144,0,-2.39415	1/1:95:0,95:0:0:95:3404:-305.28,-28.5979,0	1/1:73:0,73:0:0:73:2624:-236.222,-21.9752,0	1/1:14:0,14:0:0:14:485:-43.849,-4.21442,0	0/1:208:113,95:113:4032:95:3399:-241.044,0,-299.752	0/1:41:15,26:15:540:26:926:-70.79,0,-36.5766	0/1:5:1,4:1:36:4:144:-11.8047,0,-2.09312	0/1:17:5,12:5:165:12:428:-33.6198,0,-10.0542	1/1:72:0,72:0:0:72:2571:-231.15,-21.6742,0	0/1:78:43,35:43:1532:35:1246:-88.6359,0,-114.607	1/1:5:0,5:0:0:5:180:-16.5401,-1.50515,0	1/1:338:0,338:0:0:338:12081:-1084.72,-101.748,0	0/1:207:115,92:115:4045:92:3300:-234.218,0,-301.908	1/1:93:3,90:3:108:90:3228:-278.494,-17.9206,0	1/1:140:0,140:0:0:140:5006:-450.007,-42.1442,0	0/1:148:57,91:57:2040:91:3272:-248.652,0,-139.314	1/1:112:1,111:1:36:111:3964:-352.679,-30.1171,0	1/1:23:0,23:0:0:23:828:-74.3738,-6.92369,0	1/1:102:2,100:2:68:100:3588:-315.597,-24.2474,0	0/1:83:43,40:43:1529:40:1422:-103.092,0,-112.911	1/1:31:0,31:0:0:31:1099:-99.1494,-9.33193,0	1/1:59:0,59:0:0:59:2101:-187.994,-17.7608,0	0/1:74:42,32:42:1500:32:1133:-79.3488,0,-112.972	1/1:123:0,123:0:0:123:4406:-394.145,-37.0267,0	1/1:168:0,168:0:0:168:6028:-541.733,-50.573,0	1/1:88:0,88:0:0:88:3156:-283.18,-26.4906,0	1/1:165:0,165:0:0:165:5928:-530.235,-49.67,0	1/1:11:0,11:0:0:11:396:-35.7034,-3.31133,0	1/1:204:0,204:0:0:204:7324:-657.201,-61.4101,0	0/1:70:35,35:35:1244:35:1256:-91.537,0,-91.1811	0/1:191:91,100:91:3233:100:3561:-262.499,0,-232.828	1/1:113:0,113:0:0:113:4047:-363.214,-34.0164,0	1/1:67:0,67:0:0:67:2395:-215.188,-20.169,0	0/1:115:55,60:55:1960:60:2143:-158.21,0,-142.012	0/1:157:80,77:80:2853:77:2764:-200.561,0,-209.735	0/1:35:17,18:17:612:18:648:-47.7607,0,-44.8308	1/1:69:0,69:0:0:69:2476:-220.993,-20.7711,0	1/1:89:0,89:0:0:89:3185:-285.836,-26.7917,0	1/1:23:0,23:0:0:23:817:-73.1335,-6.92369,0	0/1:58:31,27:31:1116:27:968:-69.7724,0,-83.2864	0/1:91:58,33:58:2076:33:1180:-78.7696,0,-159.712	1/1:146:0,146:0:0:146:5213:-467.429,-43.9504,0	1/1:106:0,106:0:0:106:3808:-342.191,-31.9092,0
chr02	2945042	.	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chr02	2945057	.	T	G	45403	PASS	AB=0.488216;ABP=9.66329;AC=34;AF=0.180851;AN=188;AO=2701;CIGAR=1X;DP=15065;DPB=15065;DPRA=1.05385;EPP=5850.8;EPPR=26692.8;GTI=1;LEN=1;MEANALT=1.10256;MQM=59.5946;MQMR=59.7221;NS=94;NUMALT=1;ODDS=3.41078;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96608;QR=442833;RO=12355;RPL=1;RPP=5859.47;RPPR=26701.4;RPR=2700;RUN=1;SAF=2700;SAP=5859.47;SAR=1;SRF=12354;SRP=26822.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.67	0/0:301:301,0:301:10815:0:0:0,-90.61,-973.182	0/0:171:171,0:171:6131:0:0:0,-51.4761,-551.664	0/1:326:154,171:154:5507:171:6116:-452.031,0,-397.555	0/1:127:55,72:55:1959:72:2572:-193.493,0,-138.349	0/1:115:52,63:52:1864:63:2264:-169.401,0,-133.413	0/0:242:241,1:241:8639:1:36:0,-69.251,-773.888	0/0:282:282,0:282:10105:0:0:0,-84.8905,-909.319	0/0:190:189,1:189:6776:1:36:0,-53.5974,-605.839	0/0:182:182,0:182:6488:0:0:0,-54.7875,-583.962	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.657	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.148	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.035	0/1:104:53,51:53:1891:51:1828:-133.364,0,-139.151	0/1:111:69,42:69:2480:42:1512:-102.953,0,-190.023	0/1:71:39,32:39:1404:32:1152:-82.5886,0,-105.285	0/0:72:71,0:71:2539:0:0:0,-21.3731,-228.357	0/1:97:50,47:50:1800:47:1684:-122.628,0,-133.066	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.529	0/1:416:234,181:234:8388:181:6491:-459.001,0,-629.611	0/1:294:136,158:136:4884:158:5618:-417.066,0,-351.18	0/0:195:195,0:195:7000:0:0:0,-58.7008,-629.942	0/0:219:219,0:219:7844:0:0:0,-65.9256,-705.648	0/1:217:140,77:140:5016:77:2749:-182.327,0,-385.463	0/0:113:113,0:113:4044:0:0:0,-34.0164,-363.89	0/0:491:489,0:489:17505:0:0:0,-147.204,-1574.39	0/0:169:169,0:169:6063:0:0:0,-50.8741,-545.75	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.869	0/0:475:475,0:475:17064:0:0:0,-142.989,-1535.22	0/0:185:185,0:185:6626:0:0:0,-55.6905,-596.381	0/1:271:146,125:146:5230:125:4496:-323.096,0,-388.98	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.605	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.213	0/1:20:17,3:17:612:3:108:-4.00813,0,-49.3928	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	0/0:345:345,0:345:12355:0:0:0,-103.855,-1111.67	0/1:362:209,153:209:7492:153:5444:-381.075,0,-565.272	0/1:126:62,64:62:2228:64:2280:-167.507,0,-162.846	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:214:214,0:214:7646:0:0:0,-64.4204,-688.131	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.415	0/0:205:205,0:205:7356:0:0:0,-61.7111,-662.072	0/0:129:129,0:129:4629:0:0:0,-38.8329,-416.662	0/1:123:54,69:54:1944:69:2458:-184.437,0,-138.207	0/0:171:171,0:171:6148:0:0:0,-51.4761,-553.299	0/1:163:73,90:73:2593:90:3228:-241.451,0,-184.509	0/0:296:295,0:295:10592:0:0:0,-88.8038,-952.714	0/0:160:160,0:160:5748:0:0:0,-48.1648,-517.409	0/0:207:207,0:207:7419:0:0:0,-62.3132,-667.741	0/0:299:298,0:298:10665:0:0:0,-89.7069,-958.979	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/0:187:187,0:187:6696:0:0:0,-56.2926,-602.647	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.924	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.8921	0/1:230:131,99:131:4704:99:3540:-249.538,0,-353.864	0/1:77:34,43:34:1196:43:1540:-115.623,0,-84.7574	0/1:35:31,4:31:1116:4:144:-2.77757,0,-90.212	0/1:21:10,11:10:360:11:396:-29.6588,0,-26.4227	0/0:130:130,0:130:4663:0:0:0,-39.1339,-419.808	0/1:130:64,66:64:2296:66:2372:-174.412,0,-167.765	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:325:325,0:325:11635:0:0:0,-97.8347,-1046.71	0/1:306:155,151:155:5560:151:5395:-393.507,0,-408.393	0/0:96:94,2:94:3372:2:72:0,-22.0622,-296.72	0/0:184:183,1:183:6568:1:36:0,-51.7938,-587.589	0/1:369:184,184:184:6592:184:6567:-479.838,0,-482.203	0/0:215:212,3:212:7589:3:108:0,-54.6463,-672.633	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.478	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.162	0/1:112:51,61:51:1828:61:2188:-163.468,0,-131.071	0/0:23:23,0:23:820:0:0:0,-6.92369,-73.7345	0/0:177:177,0:177:6340:0:0:0,-53.2823,-570.63	0/1:99:45,54:45:1616:54:1928:-143.978,0,-115.906	0/0:311:311,0:311:11125:0:0:0,-93.6203,-1000.85	0/0:338:338,0:338:12151:0:0:0,-101.748,-1093.32	0/0:150:150,0:150:5379:0:0:0,-45.1545,-484.089	0/0:143:143,0:143:5109:0:0:0,-43.0473,-459.906	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7595	0/0:210:210,0:210:7504:0:0:0,-63.2163,-675.058	0/1:203:91,112:91:3256:112:3999:-298.918,0,-232.152	0/1:313:163,150:163:5852:150:5337:-385.296,0,-431.753	0/0:115:115,0:115:4136:0:0:0,-34.6184,-372.412	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.711	0/1:121:66,55:66:2353:55:1972:-141.328,0,-175.592	0/1:227:119,108:119:4259:108:3863:-279.326,0,-314.523	0/1:77:45,32:45:1616:32:1152:-80.7726,0,-122.539	0/0:133:133,0:133:4784:0:0:0,-40.037,-430.605	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.199	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.725	0/1:111:40,70:40:1427:70:2507:-192.359,0,-95.2422	0/1:100:27,73:27:964:73:2628:-206.656,0,-56.9738	0/0:208:208,0:208:7454:0:0:0,-62.6142,-670.459	0/0:159:159,0:159:5707:0:0:0,-47.8638,-513.627
chr02	2945851	.	GTCG	ATCG,ATCA	142160	PASS	AB=0.660238,0.323313;ABP=396.197,481.066;AC=154,34;AF=0.819149,0.180851;AN=188;AO=5038,573;CIGAR=1X3M,1X2M1X;DP=5669;DPB=5669.25;DPRA=30.4677,0.837822;EPP=3.21891,916.624;EPPR=3.0103;GTI=10;LEN=1,4;MEANALT=1.75269,2.5;MQM=46.0677,26.8429;MQMR=56;NS=94;NUMALT=2;ODDS=847.657;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=177336,20349;QR=70;RO=2;RPL=5038,573;RPP=10942.9,1247.26;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=2508,41;SAP=3.21891,916.624;SAR=2530,532;SRF=1;SRP=3.0103;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29,0:0:0:29,0:969,0:-81.8158,-8.72987,0,-81.8158,-8.72987,-81.8158	1/1:75:0,75,0:0:0:75,0:2573,0:-224.007,-22.5773,0,-224.007,-22.5773,-224.007	1/1:71:0,71,0:0:0:71,0:2422,0:-206.966,-21.3731,0,-206.966,-21.3731,-206.966	1/2:72:0,47,24:0:0:47,24:1688,846:-180.768,-49.5857,-35.4373,-131.27,0,-124.046	1/2:21:0,18,3:0:0:18,3:642,101:-56.7061,-5.89966,-0.481121,-51.0642,0,-50.1611	1/2:19:0,15,4:0:0:15,4:519,144:-48.0101,-7.65072,-3.13527,-40.6182,0,-39.4141	1/1:47:0,47,0:0:0:47,0:1687,0:-146.821,-14.1484,0,-146.821,-14.1484,-146.821	1/1:76:0,76,0:0:0:76,0:2629,0:-228.179,-22.8783,0,-228.179,-22.8783,-228.179	1/1:70:0,70,0:0:0:70,0:2388,0:-205.692,-21.0721,0,-205.692,-21.0721,-205.692	1/1:46:0,46,0:0:0:46,0:1633,0:-143.338,-13.8474,0,-143.338,-13.8474,-143.338	1/1:105:0,105,0:0:0:105,0:3768,0:-332.353,-31.6082,0,-332.353,-31.6082,-332.353	1/1:158:0,155,0:0:0:155,0:5249,0:-448.618,-46.6597,0,-448.618,-46.6597,-448.618	1/1:169:0,165,0:0:0:165,0:5622,0:-480.79,-49.67,0,-480.79,-49.67,-480.79	1/2:81:0,55,25:0:0:55,25:1931,898:-200.311,-47.9474,-31.3907,-152.375,0,-144.85	1/2:85:0,62,22:0:0:62,22:2216,782:-218.945,-45.418,-26.7541,-173.485,0,-166.862	1/2:78:0,46,32:0:0:46,32:1622,1116:-188.593,-61.1069,-47.2595,-127.77,0,-118.137	1/1:105:0,103,0:0:0:103,0:3600,0:-317.704,-31.0061,0,-317.704,-31.0061,-317.704	1/2:56:0,41,14:0:0:41,14:1432,504:-137.082,-24.239,-11.8968,-112.783,0,-108.569	1/1:77:0,76,0:0:0:76,0:2599,0:-223.337,-22.8783,0,-223.337,-22.8783,-223.337	1/2:42:0,29,11:0:0:29,11:1040,395:-104.844,-22.8435,-14.1137,-81.9669,0,-78.6556	1/2:43:0,25,15:0:0:25,15:882,540:-96.9848,-28.7823,-21.2565,-68.2252,0,-63.7098	1/1:12:0,12,0:0:0:12,0:432,0:-38.3,-3.61236,0,-38.3,-3.61236,-38.3	1/1:56:0,55,0:0:0:55,0:1964,0:-169.397,-16.5567,0,-169.397,-16.5567,-169.397	1/2:26:0,19,7:0:0:19,7:663,251:-66.1599,-13.6735,-7.95394,-52.7581,0,-50.6509	1/1:50:0,50,0:0:0:50,0:1758,0:-150.779,-15.0515,0,-150.779,-15.0515,-150.779	1/1:84:0,84,0:0:0:84,0:3001,0:-263.289,-25.2865,0,-263.289,-25.2865,-263.289	1/1:94:0,94,0:0:0:94,0:3317,0:-280.671,-28.2968,0,-280.671,-28.2968,-280.671	1/1:67:0,65,0:0:0:65,0:2309,0:-201.231,-19.567,0,-201.231,-19.567,-201.231	1/1:96:1,95,0:1:34:95,0:3349,0:-287.729,-25.5057,0,-288.03,-28.5979,-290.783	1/1:33:0,33,0:0:0:33,0:1163,0:-99.5668,-9.93399,0,-99.5668,-9.93399,-99.5668	1/2:37:0,26,11:0:0:26,11:910,392:-94.2648,-22.9704,-15.1436,-71.5796,0,-68.2682	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:10:0,10,0:0:0:10,0:331,0:-28.2007,-3.0103,0,-28.2007,-3.0103,-28.2007	1/1:3:0,3,0:0:0:3,0:90,0:-7.83818,-0.90309,0,-7.83818,-0.90309,-7.83818	1/2:5:0,1,4:0:0:1,4:32,144:-9.5916,-7.22768,-6.92665,-2.64519,0,-1.44107	1/2:8:0,6,2:0:0:6,2:200,72:-18.6692,-3.72778,-1.9216,-15.1896,0,-14.5875	1/1:250:1,246,0:1:36:246,0:8831,0:-769.917,-71.1067,0,-770.218,-74.0534,-773.155	1/2:12:0,8,4:0:0:8,4:286,144:-30.7729,-7.92343,-5.51519,-23.1306,0,-21.9264	1/2:60:0,40,20:0:0:40,20:1353,714:-140.419,-35.0256,-22.9844,-105.654,0,-99.633	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:61:0,61,0:0:0:61,0:2157,0:-184.37,-18.3628,0,-184.37,-18.3628,-184.37	1/1:68:0,66,0:0:0:66,0:2340,0:-201.625,-19.868,0,-201.625,-19.868,-201.625	1/1:60:0,59,0:0:0:59,0:2069,0:-178.354,-17.7608,0,-178.354,-17.7608,-178.354	1/1:104:0,103,0:0:0:103,0:3688,0:-322.488,-31.0061,0,-322.488,-31.0061,-322.488	1/2:81:0,49,31:0:0:49,31:1753,1098:-200.253,-63.3972,-48.6467,-136.906,0,-127.574	1/1:30:0,30,0:0:0:30,0:1066,0:-93.1547,-9.0309,0,-93.1547,-9.0309,-93.1547	1/2:32:0,21,11:0:0:21,11:720,396:-75.3067,-19.3025,-12.9809,-56.2658,0,-52.9545	1/1:56:0,56,0:0:0:56,0:1979,0:-169.7,-16.8577,0,-169.7,-16.8577,-169.7	1/1:24:0,23,0:0:0:23,0:828,0:-72.0695,-6.92369,0,-72.0695,-6.92369,-72.0695	1/1:43:0,43,0:0:0:43,0:1540,0:-134.615,-12.9443,0,-134.615,-12.9443,-134.615	1/1:65:0,65,0:0:0:65,0:2318,0:-202.002,-19.567,0,-202.002,-19.567,-202.002	1/1:1:0,1,0:0:0:1,0:36,0:-3.59142,-0.30103,0,-3.59142,-0.30103,-3.59142	1/1:51:0,51,0:0:0:51,0:1770,0:-153.631,-15.3525,0,-153.631,-15.3525,-153.631	1/1:18:0,18,0:0:0:18,0:642,0:-56.5329,-5.41854,0,-56.5329,-5.41854,-56.5329	1/1:4:0,4,0:0:0:4,0:132,0:-11.0966,-1.20412,0,-11.0966,-1.20412,-11.0966	1/2:31:0,14,17:0:0:14,17:493,603:-69.6217,-32.412,-28.1976,-37.4999,0,-32.3824	1/2:31:0,23,8:0:0:23,8:813,282:-80.3196,-16.8296,-9.90588,-63.7733,0,-61.3651	1/2:6:0,1,5:0:0:1,5:36,178:-15.6224,-12.6847,-12.3837,-3.2882,0,-1.78305	2/2:2:0,0,2:0:0:0,2:0,72:-5.98669,-5.98669,-5.98669,-0.60206,-0.60206,0	1/1:57:0,57,0:0:0:57,0:2020,0:-173.971,-17.1587,0,-173.971,-17.1587,-173.971	1/2:94:0,61,30:0:0:61,30:2179,1080:-232.142,-62.2523,-43.8894,-169.849,0,-160.818	1/1:4:0,4,0:0:0:4,0:144,0:-12.6793,-1.20412,0,-12.6793,-1.20412,-12.6793	1/1:44:0,44,0:0:0:44,0:1554,0:-136.555,-13.2453,0,-136.555,-13.2453,-136.555	1/2:53:0,43,10:0:0:43,10:1530,359:-140.95,-21.0807,-8.13641,-120.148,0,-117.138	1/1:37:0,37,0:0:0:37,0:1295,0:-113.045,-11.1381,0,-113.045,-11.1381,-113.045	1/1:38:0,38,0:0:0:38,0:1351,0:-116.279,-11.4391,0,-116.279,-11.4391,-116.279	1/2:43:0,34,9:0:0:34,9:1212,318:-114.514,-18.8956,-8.66057,-95.8987,0,-93.1894	1/1:60:0,59,1:0:0:59,1:2119,36:-181.831,-17.7608,0,-179.75,-15.4132,-179.449	1/1:62:0,62,0:0:0:62,0:2175,0:-185.708,-18.6639,0,-185.708,-18.6639,-185.708	1/1:41:0,41,0:0:0:41,0:1431,0:-125.017,-12.3422,0,-125.017,-12.3422,-125.017	1/2:141:0,65,67:0:0:65,67:2316,2393:-352.725,-168.165,-148.598,-184.555,0,-164.386	1/1:7:0,7,0:0:0:7,0:248,0:-21.6212,-2.10721,0,-21.6212,-2.10721,-21.6212	1/1:33:0,33,0:0:0:33,0:1117,0:-94.9166,-9.93399,0,-94.9166,-9.93399,-94.9166	1/2:31:0,24,6:0:0:24,6:819,210:-72.9486,-10.471,-3.24629,-62.5182,0,-60.712	1/1:95:0,94,0:0:0:94,0:3314,0:-288.167,-28.2968,0,-288.167,-28.2968,-288.167	1/1:62:0,62,0:0:0:62,0:2223,0:-191.641,-18.6639,0,-191.641,-18.6639,-191.641	1/1:62:0,62,0:0:0:62,0:2126,0:-182.415,-18.6639,0,-182.415,-18.6639,-182.415	1/1:43:0,43,0:0:0:43,0:1481,0:-127.891,-12.9443,0,-127.891,-12.9443,-127.891	1/1:4:0,4,0:0:0:4,0:141,0:-12.751,-1.20412,0,-12.751,-1.20412,-12.751	1/1:49:0,49,0:0:0:49,0:1727,0:-149.566,-14.7505,0,-149.566,-14.7505,-149.566	1/2:32:0,22,10:0:0:22,10:759,340:-76.3115,-17.5489,-10.9263,-59.021,0,-56.0107	1/2:61:0,41,20:0:0:41,20:1457,691:-153.807,-41.0878,-28.7456,-113.005,0,-106.984	1/1:127:0,123,0:0:0:123,0:4409,0:-388.055,-37.0267,0,-388.055,-37.0267,-388.055	1/1:120:0,120,0:0:0:120,0:4305,0:-375.901,-36.1236,0,-375.901,-36.1236,-375.901	1/2:92:0,74,16:0:0:74,16:2660,567:-244.401,-33.1057,-10.8294,-211.238,0,-206.422	1/2:181:0,122,57:0:0:122,57:4354,2021:-458.414,-117.568,-80.8419,-340.807,0,-323.649	1/2:60:0,32,27:0:0:32,27:1095,970:-130.943,-47.1503,-37.5173,-83.7471,0,-75.6193	1/1:127:0,127,0:0:0:127,0:4338,0:-374.934,-38.2308,0,-374.934,-38.2308,-374.934	1/1:110:0,109,0:0:0:109,0:3768,0:-327.421,-32.8123,0,-327.421,-32.8123,-327.421	1/1:69:0,69,0:0:0:69,0:2440,0:-210.726,-20.7711,0,-210.726,-20.7711,-210.726	1/2:79:0,52,26:0:0:52,26:1840,912:-192.435,-49.5197,-33.8662,-142.865,0,-135.038	1/2:70:0,48,22:0:0:48,22:1717,780:-181.411,-45.888,-31.4386,-135.813,0,-129.191	1/1:46:0,46,0:0:0:46,0:1656,0:-144.824,-13.8474,0,-144.824,-13.8474,-144.824	1/1:237:0,237,0:0:0:237,0:8464,0:-731.042,-71.3441,0,-731.042,-71.3441,-731.042
chr02	2948820	.	CGACTT	TGACTC,TGACTT	113272	PASS	AB=0.512808,0.48217;ABP=5.84707,8.50824;AC=151,35;AF=0.811828,0.188172;AN=186;AO=4605,970;CIGAR=1X4M1X,1X5M;DP=5614;DPB=5614.17;DPRA=20.3297,1.23472;EPP=10002.6,2109.34;EPPR=0;GTI=1;LEN=6,1;MEANALT=1.79348,2.225;MQM=38.4771,53.3742;MQMR=0;NS=93;NUMALT=2;ODDS=2.45474;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.333333;PQA=10.6667,10.6667;PQR=0;PRO=0;QA=162499,34760;QR=0;RO=0;RPL=4605,970;RPP=10002.6,2109.34;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10002.6,2109.34;SAR=4605,970;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62,0:0:0:62,0:2134,0:-182.75,-18.6639,0,-182.75,-18.6639,-182.75	1/1:34:0,34,0:0:0:34,0:1208,0:-103.811,-10.235,0,-103.811,-10.235,-103.811	1/1:93:0,93,0:0:0:93,0:3289,0:-281.768,-27.9958,0,-281.768,-27.9958,-281.768	1/2:110:0,55,55:0:0:55,55:1957,1961:-310.611,-159.631,-143.075,-151.326,0,-134.77	1/2:25:0,15,10:0:0:15,10:525,360:-70.1079,-29.6876,-25.1721,-40.7691,0,-37.7588	1/2:32:0,13,19:0:0:13,19:468,684:-92.0657,-55.9295,-52.0161,-36.4851,0,-30.7655	1/1:34:0,34,0:0:0:34,0:1202,0:-103.07,-10.235,0,-103.07,-10.235,-103.07	1/1:52:0,51,0:0:0:51,0:1794,0:-153.277,-15.3525,0,-153.277,-15.3525,-153.277	1/1:116:0,114,0:0:0:114,0:4013,0:-344.008,-34.3174,0,-344.008,-34.3174,-344.008	1/1:41:0,41,0:0:0:41,0:1449,0:-124.208,-12.3422,0,-124.208,-12.3422,-124.208	1/1:45:0,44,0:0:0:44,0:1551,0:-132.5,-13.2453,0,-132.5,-13.2453,-132.5	1/1:101:0,100,0:0:0:100,0:3565,0:-305.269,-30.103,0,-305.269,-30.103,-305.269	1/1:82:0,81,0:0:0:81,0:2897,0:-247.8,-24.3834,0,-247.8,-24.3834,-247.8	1/2:56:0,37,19:0:0:37,19:1309,684:-156.882,-56.083,-44.9449,-101.151,0,-95.4313	1/2:85:0,42,43:0:0:42,43:1504,1540:-241.154,-125.25,-112.607,-116.252,0,-103.308	1/2:48:0,17,29:0:0:17,29:579,1044:-129.424,-84.9484,-79.8308,-44.5029,0,-35.773	1/1:27:0,27,0:0:0:27,0:959,0:-82.1365,-8.12781,0,-82.1365,-8.12781,-82.1365	1/2:29:0,13,16:0:0:13,16:468,568:-82.3797,-46.2413,-42.3279,-36.4851,0,-31.6686	1/1:23:0,23,0:0:0:23,0:821,0:-70.5534,-6.92369,0,-70.5534,-6.92369,-70.5534	1/2:124:0,71,52:0:0:71,52:2461,1864:-340.389,-151.415,-130.041,-189.044,0,-173.391	1/2:79:0,46,33:0:0:46,33:1644,1184:-223.176,-96.3221,-82.4747,-127.204,0,-117.27	1/1:94:0,94,0:0:0:94,0:3297,0:-281.999,-28.2968,0,-281.999,-28.2968,-281.999	1/1:65:0,64,1:0:0:64,1:2292,36:-196.335,-19.2659,0,-193.402,-15.9738,-193.101	1/2:34:0,22,9:0:0:22,9:792,324:-87.6272,-26.4597,-19.837,-61.2251,0,-58.5159	1/1:88:0,85,0:0:0:85,0:3028,0:-259.521,-25.5876,0,-259.521,-25.5876,-259.521	1/1:142:0,141,1:0:0:141,1:5000,36:-427.616,-42.4452,0,-424.683,-39.1531,-424.382	1/1:206:0,204,1:0:0:204,1:7205,36:-616.138,-61.4101,0,-613.205,-58.4688,-612.904	1/1:41:0,41,0:0:0:41,0:1438,0:-122.885,-12.3422,0,-122.885,-12.3422,-122.885	1/1:157:0,156,0:0:0:156,0:5519,0:-471.805,-46.9607,0,-471.805,-46.9607,-471.805	1/1:22:0,22,0:0:0:22,0:777,0:-66.7489,-6.62266,0,-66.7489,-6.62266,-66.7489	1/2:63:0,34,29:0:0:34,29:1176,1018:-172.299,-82.8697,-72.6347,-89.7684,0,-81.0385	1/1:6:0,6,0:0:0:6,0:201,0:-17.6103,-1.80618,0,-17.6103,-1.80618,-17.6103	1/1:10:0,10,0:0:0:10,0:360,0:-31.1548,-3.0103,0,-31.1548,-3.0103,-31.1548	1/1:4:0,4,0:0:0:4,0:144,0:-12.6673,-1.20412,0,-12.6673,-1.20412,-12.6673	1/2:11:0,3,8:0:0:3,8:108,288:-32.1543,-23.8183,-22.9152,-8.68299,0,-6.27475	1/2:15:0,12,3:0:0:12,3:395,108:-38.9033,-9.15779,-5.54543,-30.0948,0,-29.1917	1/1:205:0,203,1:0:0:203,1:7201,36:-615.832,-61.1091,0,-612.899,-58.1334,-612.598	1/2:96:0,59,37:0:0:59,37:2056,1317:-265.544,-107.519,-89.7579,-158.371,0,-147.233	1/2:45:0,26,18:0:0:26,18:910,648:-122.336,-52.6534,-44.8266,-69.6871,0,-64.2685	.:.:.:.:.:.:.:.	1/1:37:0,37,0:0:0:37,0:1314,0:-112.517,-11.1381,0,-112.517,-11.1381,-112.517	1/1:41:0,41,0:0:0:41,0:1473,0:-126.22,-12.3422,0,-126.22,-12.3422,-126.22	1/1:79:0,78,0:0:0:78,0:2737,0:-233.539,-23.4803,0,-233.539,-23.4803,-233.539	1/1:32:0,32,0:0:0:32,0:1137,0:-97.6425,-9.63296,0,-97.6425,-9.63296,-97.6425	1/2:58:0,34,24:0:0:34,24:1210,864:-163.778,-70.7471,-60.5121,-93.3811,0,-86.1564	1/1:35:0,35,0:0:0:35,0:1248,0:-107.078,-10.5361,0,-107.078,-10.5361,-107.078	1/2:73:0,35,37:0:0:35,37:1244,1332:-204.736,-108.527,-97.9914,-96.2148,0,-85.0767	1/1:84:0,84,0:0:0:84,0:2937,0:-251.694,-25.2865,0,-251.694,-25.2865,-251.694	1/1:67:0,66,0:0:0:66,0:2357,0:-201.446,-19.868,0,-201.446,-19.868,-201.446	1/1:35:0,35,0:0:0:35,0:1230,0:-105.3,-10.5361,0,-105.3,-10.5361,-105.3	1/1:85:0,82,0:0:0:82,0:2917,0:-250.03,-24.6845,0,-250.03,-24.6845,-250.03	1/2:8:0,3,5:0:0:3,5:108,180:-23.3577,-15.0234,-14.1204,-8.68299,0,-7.17784	1/1:79:0,78,0:0:0:78,0:2726,0:-233.831,-23.4803,0,-233.831,-23.4803,-233.831	1/1:30:0,30,0:0:0:30,0:1059,0:-90.6763,-9.0309,0,-90.6763,-9.0309,-90.6763	1/1:1:0,1,0:0:0:1,0:36,0:-3.4236,-0.30103,0,-3.4236,-0.30103,-3.4236	1/2:89:0,45,44:0:0:45,44:1574,1572:-249.298,-128.325,-114.779,-121.317,0,-108.072	1/2:10:0,6,4:0:0:6,4:201,144:-27.3726,-12.0906,-10.2844,-15.6243,0,-14.4202	2/2:3:0,0,3:0:0:0,3:0,108:-10.0609,-10.0609,-10.0609,-0.90309,-0.90309,0	1/2:7:0,2,5:0:0:2,5:72,1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chr02	2989736	.	G	A	35943	PASS	AB=0.526844;ABP=27.9588;AC=37;AF=0.198925;AN=186;AO=2133;CIGAR=1X;DP=11716;DPB=11716;DPRA=1.18366;EPP=4634.76;EPPR=20788.3;GTI=1;LEN=1;MEANALT=1.12245;MQM=60;MQMR=59.9994;NS=93;NUMALT=1;ODDS=1.73152;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75908;QR=337260;RO=9572;RPL=0;RPP=4634.76;RPPR=20788.3;RPR=2133;RUN=1;SAF=0;SAP=4634.76;SAR=2133;SRF=0;SRP=20788.3;SRR=9572;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:58:58,0:58:2052:0:0:0,-17.4597,-184.949	0/0:115:114,1:114:4002:1:36:0,-31.0202,-356.773	0/0:192:191,1:191:6764:1:36:0,-54.1995,-605.235	0/1:285:121,164:121:4273:164:5841:-440.009,0,-298.953	0/1:81:23,58:23:819:58:2075:-162.636,0,-49.6481	0/1:38:22,16:22:779:16:572:-40.3743,0,-58.9929	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:275:273,0:273:9616:0:0:0,-82.1812,-865.061	0/0:61:60,1:60:2077:1:21:0,-16.2629,-185.095	0/0:152:152,0:152:5351:0:0:0,-45.7566,-481.722	0/0:43:43,0:43:1510:0:0:0,-12.9443,-136.192	0/0:83:83,0:83:2864:0:0:0,-24.9855,-257.997	0/0:78:78,0:78:2725:0:0:0,-23.4803,-245.493	0/1:43:20,23:20:692:23:826:-61.7195,0,-49.6543	0/1:59:33,26:33:1152:26:936:-66.7987,0,-86.2253	0/1:41:16,25:16:576:25:892:-68.2575,0,-39.8328	0/0:66:66,0:66:2344:0:0:0,-19.868,-211.22	0/1:59:33,26:33:1155:26:932:-66.4381,0,-86.4948	0/0:34:34,0:34:1192:0:0:0,-10.235,-107.582	0/1:316:146,169:146:5154:169:6002:-445.102,0,-368.819	0/1:164:66,98:66:2337:98:3507:-266.471,0,-161.219	0/0:280:280,0:280:9843:0:0:0,-84.2884,-885.825	0/0:83:82,1:82:2902:1:36:0,-21.3872,-257.818	0/1:182:76,106:76:2661:106:3749:-282.822,0,-184.947	0/0:81:81,0:81:2873:0:0:0,-24.3834,-258.807	0/0:428:423,4:423:14820:4:129:0,-116.964,-1321.62	0/0:299:299,0:299:10567:0:0:0,-90.008,-950.953	0/0:48:48,0:48:1662:0:0:0,-14.4494,-149.863	0/0:344:344,0:344:12115:0:0:0,-103.554,-1090.22	0/0:143:143,0:143:5087:0:0:0,-43.0473,-457.974	0/1:87:30,57:30:1068:57:2021:-155.971,0,-70.2425	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:248:247,1:247:8664:1:36:0,-71.0572,-776.168	0/1:305:173,132:173:6103:132:4702:-331.525,0,-457.56	0/1:61:33,28:33:1155:28:999:-71.8617,0,-85.8927	.:.:.:.:.:.:.:.	0/0:204:204,0:204:7246:0:0:0,-61.4101,-652.194	0/0:36:36,0:36:1249:0:0:0,-10.8371,-112.71	0/0:153:151,1:151:5323:1:36:0,-42.5181,-475.607	0/0:109:109,0:109:3863:0:0:0,-32.8123,-347.869	0/1:81:45,36:45:1578:36:1284:-91.48,0,-117.926	0/0:99:99,0:99:3508:0:0:0,-29.802,-315.931	0/1:181:83,98:83:2931:98:3483:-259.194,0,-209.537	0/0:228:227,0:227:8009:0:0:0,-68.3338,-720.478	0/0:128:128,0:128:4545:0:0:0,-38.5318,-409.219	0/0:255:254,1:254:9016:1:36:0,-73.1644,-807.824	0/0:174:173,1:173:6143:1:36:0,-48.7809,-549.374	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:452:450,1:450:15880:1:36:0,-132.526,-1425.31	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2163	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:184:84,100:84:2990:100:3561:-265.308,0,-213.942	0/1:61:23,38:23:812:38:1341:-102.626,0,-55.0381	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:13:3,10:3:104:10:356:-28.4679,0,-5.78942	0/0:32:32,0:32:1130:0:0:0,-9.63296,-102.007	0/1:122:60,62:60:2065:62:2205:-161.988,0,-149.39	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:310:310,0:310:11048:0:0:0,-93.3193,-994.215	0/1:273:138,135:138:4861:135:4805:-350.424,0,-355.467	0/0:96:93,3:93:3252:3:108:0,-18.8237,-282.824	0/0:133:132,0:132:4694:0:0:0,-39.736,-422.263	0/1:267:124,143:124:4293:143:5083:-377.239,0,-306.175	0/0:90:89,1:89:3136:1:36:0,-23.4944,-278.866	0/0:18:18,0:18:614:0:0:0,-5.41854,-55.577	0/0:94:90,4:90:3190:4:144:0,-14.9832,-274.009	0/1:80:38,42:38:1343:42:1495:-110.761,0,-97.087	0/0:13:13,0:13:432:0:0:0,-3.91339,-39.1977	0/0:74:74,0:74:2597:0:0:0,-22.2762,-233.977	0/1:76:32,44:32:1132:44:1564:-118.173,0,-79.3103	0/0:85:85,0:85:2951:0:0:0,-25.5875,-265.824	0/0:502:502,0:502:17729:0:0:0,-151.117,-1595.24	0/0:152:150,2:150:5299:2:72:0,-38.9198,-470.211	0/0:158:157,0:157:5471:0:0:0,-47.2617,-492.162	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:323:323,0:323:11346:0:0:0,-97.2327,-1021.04	0/1:200:90,109:90:3197:109:3847:-286.161,0,-227.688	0/1:245:134,111:134:4718:111:3956:-282.478,0,-351.027	0/0:123:123,0:123:4244:0:0:0,-37.0267,-382.146	0/0:53:53,0:53:1852:0:0:0,-15.9546,-166.957	0/1:127:61,66:61:2132:66:2364:-174.788,0,-153.916	0/1:146:84,62:84:2910:62:2193:-153.684,0,-218.182	0/1:31:18,13:18:644:13:464:-32.7656,0,-48.9587	0/0:83:83,0:83:2912:0:0:0,-24.9855,-262.317	0/0:74:73,1:73:2579:1:36:0,-18.6779,-228.762	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:62:36,26:36:1279:26:936:-65.8956,0,-96.7486	0/1:111:37,73:37:1279:73:2619:-202.484,0,-81.9317	0/0:144:144,0:144:5105:0:0:0,-43.3483,-459.594	0/0:110:110,0:110:3907:0:0:0,-33.1133,-351.826
chr02	3042109	.	T	C	345121	PASS	AB=0.514053;ABP=12.2872;AC=151;AF=0.803191;AN=188;AO=12422;CIGAR=1X;DP=15084;DPB=15084;DPRA=18.0108;EPP=6.73652;EPPR=4.59193;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.7939;MQMR=59.9424;NS=94;NUMALT=1;ODDS=2.07139;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=442380;QR=94504;RO=2658;RPL=12347;RPP=26329.5;RPPR=5662.42;RPR=75;RUN=1;SAF=6209;SAP=3.0131;SAR=6213;SRF=1294;SRP=7.01339;SRR=1364;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:135:1,134:1:36:134:4793:-427.918,-37.0408,0	1/1:116:0,116:0:0:116:4128:-371.695,-34.9195,0	1/1:293:0,291:0:0:291:10365:-932.159,-87.5997,0	0/1:340:164,176:164:5789:176:6265:-461.582,0,-418.55	0/1:106:44,62:44:1568:62:2215:-167.7,0,-109.428	0/1:105:48,57:48:1728:57:2022:-150.634,0,-124.197	1/1:69:0,69:0:0:69:2430:-218.953,-20.7711,0	1/1:339:0,339:0:0:339:12036:-1082.23,-102.049,0	1/1:202:0,202:0:0:202:7173:-645.608,-60.8081,0	1/1:146:0,146:0:0:146:5198:-467.901,-43.9504,0	1/1:126:0,126:0:0:126:4469:-402.377,-37.9298,0	1/1:226:0,226:0:0:226:8039:-723.418,-68.0328,0	1/1:192:0,192:0:0:192:6856:-617.09,-57.7978,0	0/1:173:83,90:83:2954:90:3200:-235.94,0,-214.015	0/1:162:88,74:88:3139:74:2639:-188.983,0,-233.968	0/1:149:66,83:66:2363:83:2968:-222.495,0,-168.074	1/1:96:0,96:0:0:96:3408:-306.918,-28.8989,0	0/1:76:39,37:39:1404:37:1307:-95.0525,0,-103.781	1/1:87:0,87:0:0:87:3105:-279.66,-26.1896,0	0/1:246:128,118:128:4538:118:4198:-303.936,0,-334.535	0/1:266:143,123:143:5064:123:4358:-312.296,0,-375.834	1/1:98:0,98:0:0:98:3491:-314.369,-29.5009,0	1/1:210:0,210:0:0:210:7509:-675.851,-63.2163,0	0/1:123:46,77:46:1644:77:2741:-209.905,0,-111.222	1/1:154:0,154:0:0:154:5500:-495.092,-46.3586,0	1/1:291:0,291:0:0:291:10341:-930.526,-87.5997,0	1/1:400:0,400:0:0:400:14290:-1285.2,-120.412,0	1/1:68:1,67:1:32:67:2382:-211.437,-17.2707,0	1/1:422:1,420:1:36:420:15001:-1346.21,-123.495,0	1/1:179:0,179:0:0:179:6402:-576.265,-53.8844,0	0/1:144:85,59:85:3004:59:2083:-144.391,0,-227.243	1/1:7:0,7:0:0:7:252:-23.0243,-2.10721,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:344:0,344:0:0:344:12235:-1099.65,-103.554,0	0/1:168:87,81:87:3089:81:2895:-210.2,0,-227.663	0/1:110:63,47:63:2234:47:1658:-116.39,0,-168.21	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:202:0,202:0:0:202:7200:-647.96,-60.8081,0	1/1:43:1,42:1:36:42:1508:-132.374,-9.34602,0	1/1:477:1,476:1:36:476:16916:-1518.05,-139.993,0	1/1:120:0,120:0:0:120:4303:-387.431,-36.1236,0	0/1:127:49,78:49:1756:78:2746:-209.045,0,-120.093	1/1:143:0,143:0:0:143:5097:-458.657,-43.0473,0	0/1:248:108,140:108:3832:140:4989:-374.476,0,-270.425	1/1:313:1,312:1:36:312:11055:-991.229,-90.6241,0	1/1:131:0,131:0:0:131:4696:-422.782,-39.4349,0	1/1:163:0,163:0:0:163:5787:-520.934,-49.0679,0	1/1:122:0,122:0:0:122:4336:-390.416,-36.7257,0	0/1:10:2,8:2:68:8:288:-23.2571,0,-3.44741	1/1:248:4,244:4:140:244:8737:-773.221,-61.7109,0	1/1:95:0,95:0:0:95:3362:-302.796,-28.5979,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:238:97,141:97:3420:141:5028:-380.995,0,-236.363	0/1:109:64,45:64:2270:45:1597:-111.207,0,-171.749	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	1/1:169:0,169:0:0:169:6004:-540.453,-50.8741,0	0/1:216:108,108:108:3868:108:3868:-283.274,0,-283.292	1/1:11:0,11:0:0:11:383:-34.7962,-3.31133,0	1/1:199:0,199:0:0:199:7071:-636.431,-59.905,0	0/1:251:135,116:135:4828:116:4145:-297.669,0,-359.117	0/1:121:14,107:14:496:107:3781:-304.029,0,-8.54963	1/1:148:1,147:1:36:147:5247:-468.761,-40.9593,0	0/1:245:131,114:131:4645:114:4064:-292.172,0,-344.459	1/1:224:4,220:4:144:220:7872:-695.144,-54.1171,0	1/1:71:0,71:0:0:71:2524:-227.408,-21.3731,0	1/1:93:1,92:1:36:92:3283:-292.075,-24.3975,0	0/1:113:51,62:51:1816:62:2206:-164.787,0,-129.147	1/1:18:0,18:0:0:18:648:-58.6495,-5.41854,0	1/1:150:0,150:0:0:150:5358:-482.243,-45.1545,0	0/1:155:79,75:79:2788:75:2642:-191.238,0,-204.406	1/1:298:0,298:0:0:298:10562:-950.366,-89.7069,0	1/1:232:0,232:0:0:232:8270:-744.301,-69.839,0	1/1:246:0,246:0:0:246:8704:-783.132,-74.0534,0	1/1:123:0,123:0:0:123:4396:-395.799,-37.0267,0	1/1:12:0,12:0:0:12:432:-39.2203,-3.61236,0	1/1:166:1,165:1:36:165:5866:-524.422,-46.3727,0	0/1:250:119,131:119:4245:131:4683:-346.291,0,-306.962	0/1:349:183,166:183:6466:166:5891:-425.129,0,-476.974	1/1:122:1,121:1:36:121:4318:-384.712,-33.1274,0	1/1:165:0,165:0:0:165:5891:-530.289,-49.67,0	0/1:107:53,54:53:1892:54:1940:-142.659,0,-138.346	0/1:297:119,178:119:4247:178:6350:-482.177,0,-292.999	0/1:52:22,30:22:788:30:1075:-81.3946,0,-55.5912	1/1:177:1,176:1:36:176:6270:-560.672,-49.684,0	1/1:159:1,158:1:36:158:5652:-505.176,-44.2655,0	1/1:100:0,100:0:0:100:3549:-319.286,-30.103,0	0/1:172:86,86:86:3059:86:3051:-223.04,0,-223.763	0/1:149:107,42:107:3827:42:1504:-90.7826,0,-299.773	1/1:222:2,220:2:72:220:7837:-698.513,-59.9919,0	1/1:278:0,278:0:0:278:9938:-894.337,-83.6863,0
chr02	3063668	.	C	T	884.652	PASS	AB=0.508269;ABP=5.56012;AC=37;AF=0.196809;AN=188;AO=2216;CIGAR=1X;DP=11941;DPB=11941;DPRA=1.01472;EPP=4161.34;EPPR=7382.31;GTI=26;LEN=1;MEANALT=1.06667;MQM=14.9337;MQMR=15.563;NS=94;NUMALT=1;ODDS=3.99441;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79289;QR=346860;RO=9719;RPL=2138;RPP=4161.34;RPPR=7372.04;RPR=78;RUN=1;SAF=2216;SAP=4814.99;SAR=0;SRF=9717;SRP=21090.2;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:58:58,0:58:2080:0:0:0,-17.4597,-84.3028	0/0:218:218,0:218:7803:0:0:0,-65.6245,-311.203	0/0:113:113,0:113:4043:0:0:0,-34.0164,-161.944	0/1:220:89,131:89:3192:131:4695:-98.363,0,-56.2699	0/1:146:68,78:68:2440:78:2796:-66.8272,0,-53.9446	0/1:85:55,30:55:1950:30:1071:-18.4882,0,-52.8874	0/0:151:151,0:151:5400:0:0:0,-45.4555,-204.941	0/0:213:211,1:211:7519:1:36:0,-62.4714,-302.627	0/0:161:161,0:161:5753:0:0:0,-48.4658,-229.469	0/0:111:111,0:111:3945:0:0:0,-33.4143,-148.779	0/0:78:78,0:78:2792:0:0:0,-23.4803,-105.987	0/0:106:105,1:105:3733:1:36:0,-30.4125,-147.299	0/0:94:94,0:94:3365:0:0:0,-28.2968,-136.593	0/1:87:45,42:45:1595:42:1497:-31.4336,0,-38.2853	0/1:82:32,50:32:1139:50:1800:-38.773,0,-19.7892	0/1:56:35,21:35:1251:21:756:-14.372,0,-33.1858	0/0:68:68,0:68:2406:0:0:0,-20.47,-96.7907	0/1:61:31,30:31:1116:30:1065:-22.565,0,-25.6021	0/0:43:43,0:43:1505:0:0:0,-12.9443,-63.1927	0/1:378:184,194:184:6583:194:6928:-136.192,0,-135.972	0/1:237:109,128:109:3887:128:4574:-102.072,0,-88.2282	0/0:175:175,0:175:6259:0:0:0,-52.6802,-239.038	0/0:142:142,0:142:5049:0:0:0,-42.7463,-197.025	0/1:168:86,82:86:3072:82:2935:-66.8474,0,-72.4419	0/0:107:106,1:106:3760:1:36:0,-30.7135,-149.448	0/0:427:427,0:427:15220:0:0:0,-128.54,-573.835	0/0:315:315,0:315:11250:0:0:0,-94.8244,-452.175	0/0:50:50,0:50:1792:0:0:0,-15.0515,-71.0645	0/0:492:492,0:492:17565:0:0:0,-148.107,-661.522	0/0:131:129,1:129:4601:1:36:0,-37.7866,-183.65	0/1:178:75,103:75:2692:103:3684:-75.7144,0,-51.0085	0/0:6:6,0:6:212:0:0:0,-1.80618,-8.77106	0/0:9:9,0:9:320:0:0:0,-2.70927,-13.0797	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.59579	0/1:5:3,2:3:104:2:72:-1.33853,0,-2.67919	1/1:17:3,14:3:108:14:504:-15.1884,-1.29821,0	0/0:219:217,2:217:7750:2:72:0,-63.2706,-298.192	0/1:262:115,147:115:4091:147:5253:-117.927,0,-86.1001	0/1:75:45,30:45:1616:30:1080:-17.7131,0,-41.4893	1/1:1:0,1:0:0:1:36:-1.49667,-0.30103,0	0/0:120:120,0:120:4258:0:0:0,-36.1236,-172.774	0/0:46:46,0:46:1635:0:0:0,-13.8474,-67.4244	0/0:221:221,0:221:7899:0:0:0,-66.5276,-317.83	0/0:74:74,0:74:2660:0:0:0,-22.2762,-101.269	0/1:80:39,41:39:1392:41:1472:-27.7066,0,-28.1386	0/0:96:96,0:96:3440:0:0:0,-28.8989,-128.641	0/1:121:49,72:49:1756:72:2584:-63.0059,0,-33.471	0/0:105:101,4:101:3597:4:144:0,-26.8063,-131.718	0/0:191:191,0:191:6822:0:0:0,-57.4967,-260.755	0/0:207:207,0:207:7407:0:0:0,-62.3132,-281.811	0/0:262:260,2:260:9276:2:72:0,-76.2148,-347.09	0/1:22:14,8:14:495:8:288:-3.57819,0,-12.4546	0/0:166:166,0:166:5930:0:0:0,-49.971,-239.878	0/0:56:56,0:56:2003:0:0:0,-16.8577,-74.3913	0/0:14:14,0:14:496:0:0:0,-4.21442,-19.9853	0/1:148:86,62:86:3071:62:2232:-40.4889,0,-78.2689	0/1:55:28,27:28:987:27:959:-19.4222,0,-21.0959	0/1:11:5,6:5:180:6:216:-4.37424,0,-3.57336	0/1:12:9,3:9:324:3:108:-0.300295,0,-9.10922	0/0:138:137,0:137:4895:0:0:0,-41.2411,-194.732	0/1:118:62,56:62:2224:56:1997:-34.8409,0,-47.5055	0/0:16:16,0:16:572:0:0:0,-4.81648,-21.7869	0/0:225:225,0:225:8061:0:0:0,-67.7317,-309.348	0/1:354:179,175:179:6399:175:6246:-121.292,0,-135.026	0/0:72:69,3:69:2480:3:108:0,-17.4835,-95.1483	0/0:98:97,1:97:3444:1:36:0,-27.5116,-129.372	0/1:298:131,164:131:4637:164:5868:-120.645,0,-86.8356	0/0:169:169,0:169:6052:0:0:0,-50.8741,-227.313	0/0:39:39,0:39:1400:0:0:0,-11.7402,-55.8976	0/0:114:114,0:114:4050:0:0:0,-34.3174,-163.449	0/1:97:51,46:51:1828:46:1640:-29.7582,0,-39.4452	0/0:36:36,0:36:1280:0:0:0,-10.8371,-48.4446	0/0:106:106,0:106:3778:0:0:0,-31.9092,-150.909	0/1:79:48,31:48:1695:31:1116:-18.1255,0,-47.4133	0/0:295:295,0:295:10545:0:0:0,-88.8038,-425.378	0/0:220:220,0:220:7858:0:0:0,-66.2266,-298.271	0/0:85:85,0:85:3023:0:0:0,-25.5875,-120.843	0/0:136:133,3:133:4780:3:108:0,-36.7494,-186.351	0/0:13:13,0:13:464:0:0:0,-3.91339,-18.0154	0/0:141:141,0:141:5042:0:0:0,-42.4452,-201.165	0/1:180:96,84:96:3410:84:2995:-60.8562,0,-83.6668	0/1:240:125,115:125:4455:115:4116:-75.7904,0,-96.3017	0/0:137:137,0:137:4915:0:0:0,-41.2411,-186.948	0/0:88:88,0:88:3138:0:0:0,-26.4906,-119.689	0/1:87:39,48:39:1352:48:1719:-34.4805,0,-26.6356	0/1:150:77,73:77:2750:73:2620:-48.2872,0,-61.8896	0/1:43:19,24:19:675:24:860:-23.052,0,-13.7709	0/0:88:88,0:88:3119:0:0:0,-26.4906,-126.08	0/0:90:90,0:90:3177:0:0:0,-27.0927,-129.282	0/0:60:60,0:60:2136:0:0:0,-18.0618,-87.8894	0/1:92:55,37:55:1980:37:1315:-22.8771,0,-50.4711	0/1:66:24,42:24:851:42:1508:-32.9993,0,-12.3157	0/0:106:106,0:106:3764:0:0:0,-31.9092,-143.007	0/0:112:112,0:112:4009:0:0:0,-33.7154,-151.454
chr02	3136848	.	T	A	194969	PASS	AB=0.444279;ABP=111.424;AC=151;AF=0.811828;AN=186;AO=7676;CIGAR=1X;DP=10133;DPB=10133;DPRA=36.7029;EPP=13730.3;EPPR=2576.27;GTI=3;LEN=1;MEANALT=1.01087;MQM=49.9944;MQMR=51.0713;NS=93;NUMALT=1;ODDS=0.312436;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=274941;QR=87606;RO=2456;RPL=1358;RPP=6962.59;RPPR=1022.86;RPR=6318;RUN=1;SAF=6673;SAP=9097.65;SAR=1003;SRF=2140;SRP=2944.56;SRR=316;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:3,44:3:108:44:1584:-134.389,-9.35764,0	1/1:175:11,164:11:396:164:5858:-496.74,-29.8254,0	1/1:150:4,146:4:144:146:5228:-455.686,-38.9894,0	0/1:163:71,92:71:2540:92:3308:-247.079,0,-175.005	0/1:77:41,36:41:1464:36:1292:-92.4344,0,-104.134	0/1:59:35,24:35:1256:24:864:-59.1542,0,-92.8694	1/1:182:2,180:2:68:180:6456:-573.497,-50.3989,0	1/1:127:10,117:10:352:117:4192:-358.588,-24.1973,0	1/1:133:2,131:2:68:131:4689:-413.954,-37.7631,0	1/1:111:6,105:6:208:105:3772:-325.282,-20.7953,0	1/1:90:1,89:1:36:89:3196:-283.267,-23.5341,0	1/1:153:3,150:3:104:150:5376:-471.34,-38.6469,0	1/1:97:3,94:3:108:94:3376:-295.105,-23.5486,0	0/1:148:93,55:93:3308:55:1976:-132.463,0,-252.929	0/1:131:79,52:79:2824:52:1872:-126.539,0,-212.568	0/1:131:86,45:86:3064:45:1585:-101.288,0,-232.161	1/1:96:3,93:3:104:93:3321:-290.325,-25.5457,0	0/1:113:66,47:66:2372:47:1688:-116.535,0,-176.565	1/1:92:7,85:7:252:85:3056:-253.795,-9.81875,0	0/1:228:106,122:106:3754:122:4357:-318.815,0,-260.635	0/1:187:78,109:78:2776:109:3884:-290.368,0,-184.859	1/1:59:2,57:2:72:57:2048:-179.308,-12.9505,0	1/1:84:4,80:4:144:80:2853:-244.86,-14.3976,0	0/1:109:72,37:72:2580:37:1317:-85.0442,0,-193.713	1/1:60:5,55:5:176:55:1976:-171.494,-12.826,0	1/1:229:6,223:6:212:223:7997:-704.552,-56.2148,0	1/1:98:4,94:4:140:94:3356:-288.865,-19.7874,0	1/1:50:0,50:0:0:50:1796:-160.709,-15.0515,0	1/1:181:2,179:2:72:179:6406:-569.707,-49.835,0	1/1:80:5,75:5:180:75:2669:-228.628,-14.1721,0	0/1:125:77,48:77:2756:48:1724:-116.856,0,-200.121	1/1:1:0,1:0:0:1:36:-3.56681,-0.30103,0	1/1:18:0,18:0:0:18:644:-57.9086,-5.41854,0	1/1:9:0,9:0:0:9:320:-28.7108,-2.70927,0	.:.:.:.:.:.:.:.	0/1:6:3,3:3:108:3:108:-8.17611,0,-8.23257	1/1:246:8,238:8:284:238:8505:-739.744,-50.3774,0	0/1:98:56,42:56:1996:42:1504:-105.047,0,-142.65	0/1:103:59,44:59:2105:44:1584:-110.301,0,-153.143	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.91519	1/1:146:4,142:4:144:142:5081:-446.376,-37.2965,0	1/1:74:1,73:1:36:73:2616:-232.855,-21.0778,0	1/1:189:6,183:6:212:183:6549:-571.685,-45.9419,0	1/1:124:3,121:3:104:121:4344:-381.832,-29.4024,0	0/1:131:66,65:66:2348:65:2313:-168.258,0,-165.702	1/1:90:2,88:2:72:88:3160:-279.081,-22.5359,0	0/1:77:41,36:41:1464:36:1288:-91.4426,0,-100.405	1/1:140:12,128:12:424:128:4561:-382.895,-15.9524,0	1/1:67:2,65:2:68:65:2340:-206.949,-17.7059,0	1/1:130:1,129:1:36:129:4628:-411.33,-35.5474,0	1/1:141:7,134:7:248:134:4824:-424.338,-34.5958,0	0/1:5:1,4:1:36:4:140:-11.3853,0,-2.08802	1/1:148:8,140:8:288:140:5008:-434.11,-33.7232,0	1/1:34:1,33:1:36:33:1188:-102.926,-6.6436,0	1/1:12:0,12:0:0:12:424:-37.8823,-3.61236,0	0/1:141:74,67:74:2652:67:2400:-171.705,0,-189.56	0/1:57:26,31:26:936:31:1104:-81.8999,0,-67.3085	0/1:2:1,1:1:36:1:36:-2.98717,0,-2.9945	0/1:20:12,8:12:409:8:288:-20.1656,0,-28.7279	1/1:57:1,56:1:36:56:2004:-175.777,-13.5604,0	0/1:163:94,69:94:3327:69:2453:-171.21,0,-250.342	1/1:4:0,4:0:0:4:144:-13.2573,-1.20412,0	1/1:94:1,93:1:36:93:3321:-296.335,-27.0984,0	0/1:173:85,88:85:3048:88:3147:-230.107,0,-215.125	1/1:57:1,56:1:36:56:2008:-178.429,-15.9603,0	1/1:95:2,93:2:64:93:3340:-296.119,-26.3255,0	0/1:173:94,78:94:3338:78:2780:-197.184,0,-241.914	1/1:103:1,102:1:36:102:3660:-324.381,-27.4196,0	1/1:50:0,50:0:0:50:1792:-160.553,-15.0515,0	1/1:89:2,87:2:68:87:3101:-273.207,-24.5171,0	0/1:150:99,51:99:3516:51:1836:-119.974,0,-267.49	1/1:25:0,25:0:0:25:900:-80.8721,-7.52575,0	1/1:78:0,78:0:0:78:2789:-247.851,-23.4803,0	0/1:101:52,49:52:1868:49:1760:-124.678,0,-127.707	1/1:201:5,196:5:176:196:7005:-618.181,-52.5672,0	1/1:133:2,131:2:72:131:4704:-416.978,-35.3968,0	1/1:103:12,91:12:424:91:3272:-269.62,-9.92667,0	1/1:126:11,115:11:396:115:4101:-344.356,-18.4106,0	1/1:12:0,12:0:0:12:432:-38.724,-3.61236,0	1/1:115:3,112:3:100:112:4000:-353.916,-31.1752,0	0/1:141:84,57:84:2996:57:2044:-139.401,0,-218.215	0/1:230:125,105:125:4453:105:3755:-267.597,0,-322.147	1/1:114:3,111:3:108:111:3992:-347.84,-24.2707,0	1/1:124:7,117:7:248:117:4200:-362.755,-25.2025,0	0/1:166:99,67:99:3547:67:2412:-166.523,0,-265.465	0/1:267:151,116:151:5401:116:4164:-293.081,0,-403.258	0/1:70:34,36:34:1224:36:1288:-93.8833,0,-89.0597	1/1:130:8,122:8:284:122:4376:-367.189,-17.3754,0	1/1:129:7,122:7:248:122:4384:-382.675,-31.1654,0	1/1:88:4,84:4:144:84:3004:-255.616,-13.2678,0	0/1:140:73,67:73:2616:67:2408:-173.086,0,-191.11	0/1:135:100,35:100:3584:35:1260:-72.7001,0,-281.804	1/1:122:5,117:5:172:117:4192:-364.203,-26.893,0	1/1:198:7,191:7:252:191:6848:-595.232,-43.202,0
chr02	3136891	.	G	A	309676	PASS	AB=0.5019;ABP=3.55479;AC=110;AF=0.585106;AN=188;AO=12117;CIGAR=1X;DP=22045;DPB=22045;DPRA=33.8525;EPP=26306.1;EPPR=21515.8;GTI=37;LEN=1;MEANALT=1.17204;MQM=53.843;MQMR=23.0534;NS=94;NUMALT=1;ODDS=2.62791;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=432180;QR=351164;RO=9911;RPL=6139;RPP=7.65557;RPPR=9302.64;RPR=5978;RUN=1;SAF=6140;SAP=7.7717;SAR=5977;SRF=1699;SRP=9296.93;SRR=8212;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:142:68,74:68:2420:74:2652:-192.923,0,-25.812	1/1:320:78,242:78:2756:242:8606:-680.709,-9.89413,0	0/1:416:138,278:138:4921:278:9904:-760.429,0,-13.7885	0/1:421:280,141:280:9940:141:5040:-325.329,0,-410.549	0/1:175:102,72:102:3622:72:2584:-179.431,0,-172.016	0/1:130:69,61:69:2455:61:2169:-155.266,0,-117.599	1/1:310:74,236:74:2591:236:8423:-685.16,-23.1638,0	1/1:310:91,219:91:3237:219:7836:-608.173,-0.928082,0	0/1:277:110,167:110:3909:167:5957:-447.428,0,-26.4876	1/1:204:52,151:52:1836:151:5397:-434.49,-11.5172,0	0/1:219:85,134:85:3009:134:4769:-362.515,0,-10.7528	0/1:290:112,178:112:3978:178:6329:-478.559,0,-24.7489	0/1:260:95,164:95:3360:164:5851:-445.773,0,-15.3899	0/1:219:142,77:142:5042:77:2730:-179.067,0,-254.23	0/1:240:158,82:158:5635:82:2929:-191.06,0,-240.248	0/1:227:146,81:146:5146:81:2882:-190.461,0,-243.978	1/1:183:43,140:43:1520:140:4972:-399.904,-12.5906,0	0/1:173:98,75:98:3478:75:2675:-187.346,0,-170.349	1/1:204:50,154:50:1767:154:5504:-441.656,-11.7858,0	0/1:489:306,183:306:10783:183:6529:-435.871,0,-457.935	0/1:416:282,134:282:9976:134:4780:-301.402,0,-447.345	0/1:144:58,86:58:2054:86:3063:-232.117,0,-11.3055	0/1:253:92,161:92:3269:161:5736:-438.978,0,-11.7572	0/1:239:159,80:159:5653:80:2872:-185.885,0,-278.163	0/1:185:79,106:79:2823:106:3796:-284.765,0,-22.526	1/1:523:140,383:140:4946:383:13680:-1095.5,-26.6696,0	0/1:446:245,200:245:8706:200:7113:-503.023,0,-109.858	0/1:123:42,81:42:1508:81:2899:-223.023,0,-4.25381	0/1:484:184,300:184:6516:300:10708:-816.346,0,-20.0584	0/1:206:61,145:61:2170:145:5159:-400.683,0,-0.20287	0/1:275:184,90:184:6499:90:3212:-205.661,0,-314.369	0/1:17:8,9:8:288:9:320:-23.9962,0,-2.90327	0/1:52:28,24:28:999:24:851:-60.9393,0,-12.1367	1/1:12:1,11:1:36:11:392:-34.0907,-2.51362,0	0/1:28:20,8:20:701:8:288:-17.8386,0,-28.3764	0/0:40:37,3:37:1290:3:108:0,-2.05891,-53.2824	0/1:573:188,385:188:6636:385:13744:-1062.39,0,-4.28267	0/1:177:111,66:111:3957:66:2364:-158.699,0,-227.572	0/1:184:115,69:115:4079:69:2468:-165.494,0,-201.161	0/0:7:7,0:7:248:0:0:0,-2.10721,-18.0771	0/1:349:109,240:109:3869:240:8595:-664.453,0,-5.23044	0/1:161:61,100:61:2169:100:3551:-269.875,0,-15.0329	1/1:343:84,259:84:3007:259:9213:-739.592,-18.6935,0	1/1:265:76,189:76:2653:189:6750:-537.255,-10.7275,0	0/1:233:152,81:152:5343:81:2896:-190.02,0,-227.728	0/1:223:79,144:79:2800:144:5149:-395.493,0,-4.22396	0/1:195:126,69:126:4493:69:2450:-158.276,0,-201.628	0/1:307:102,205:102:3602:205:7320:-565.023,0,-8.11533	1/1:210:67,142:67:2385:142:5080:-395.201,-2.06157,0	1/1:240:65,175:65:2299:175:6259:-500.808,-13.6558,0	0/1:302:99,203:99:3510:203:7233:-558.098,0,-2.02023	0/1:28:17,11:17:584:11:392:-27.138,0,-11.6269	1/1:376:106,270:106:3748:270:9630:-753.722,-5.66513,0	0/1:99:51,47:51:1784:47:1675:-120.815,0,-16.4128	0/1:25:11,14:11:372:14:492:-36.6765,0,-5.87352	0/1:307:210,97:210:7388:97:3474:-218.326,0,-380.27	0/1:136:97,39:97:3439:39:1400:-84.7225,0,-128.029	0/1:21:19,2:19:662:2:72:-0.506499,0,-29.6705	0/1:35:19,16:19:671:16:576:-41.5476,0,-34.0499	0/1:190:71,119:71:2480:119:4235:-323.094,0,-13.4305	0/1:270:179,91:179:6331:91:3218:-207.619,0,-301.379	0/1:14:5,9:5:180:9:324:-25.2359,0,-0.381069	1/1:221:58,162:58:2059:162:5789:-467.065,-13.8392,0	0/1:342:230,112:230:8201:112:4003:-256.394,0,-385.901	0/1:146:56,90:56:1991:90:3209:-243.736,0,-20.2621	1/1:183:46,137:46:1639:137:4924:-396.508,-10.6672,0	0/1:351:231,119:231:8215:119:4237:-274.952,0,-391.675	0/1:251:84,167:84:2980:167:5983:-461.482,0,-0.380239	0/1:146:52,94:52:1847:94:3341:-255.998,0,-7.20598	0/1:214:74,139:74:2594:139:4974:-379.721,0,-8.99748	0/1:202:122,80:122:4350:80:2852:-195.718,0,-240.654	0/1:66:27,39:27:956:39:1396:-105.687,0,-6.8517	0/1:184:60,123:60:2136:123:4382:-336.241,0,-3.84662	0/1:221:166,55:166:5886:55:1959:-106.61,0,-286.555	0/1:476:190,286:190:6721:286:10201:-769.649,0,-44.3991	0/1:327:119,208:119:4205:208:7416:-567.199,0,-9.21289	1/1:241:62,177:62:2168:177:6308:-501.651,-10.3663,0	1/1:237:66,171:66:2348:171:6095:-473.31,-1.03267,0	0/1:37:12,25:12:428:25:896:-69.3538,0,-0.836402	0/1:269:85,184:85:3007:184:6563:-507.307,0,-3.21323	0/1:336:238,97:238:8503:97:3476:-209.818,0,-405.317	0/1:505:326,178:326:11605:178:6359:-419.316,0,-524.6	1/1:244:67,177:67:2383:177:6272:-500.402,-10.6019,0	0/1:245:98,146:98:3457:146:5183:-390.595,0,-15.5121	0/1:251:134,117:134:4744:117:4141:-296.513,0,-238.574	0/1:421:275,146:275:9735:146:5201:-340.087,0,-428.82	0/1:108:51,57:51:1811:57:2032:-149.534,0,-80.122	0/1:255:81,174:81:2859:174:6213:-477.339,0,-3.47728	0/1:242:80,162:80:2830:162:5752:-441.016,0,-10.3485	0/1:194:63,131: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chr02	3136923	.	A	T	168718	PASS	AB=0.510698;ABP=17.2733;AC=95;AF=0.505319;AN=188;AO=7403;CIGAR=1X;DP=14461;DPB=14461;DPRA=0;EPP=16078.4;EPPR=15307.5;GTI=92;LEN=1;MEANALT=1.06383;MQM=59.9284;MQMR=10.5667;NS=94;NUMALT=1;ODDS=35.3852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=265221;QR=251886;RO=7048;RPL=7403;RPP=16078.4;RPPR=15307.5;RPR=0;RUN=1;SAF=0;SAP=16078.4;SAR=7403;SRF=0;SRP=15307.5;SRR=7048;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:102:68,34:68:2428:34:1201:-77.6886,0,-37.6766	0/1:176:72,104:72:2536:104:3713:-281.319,0,-17.9132	0/1:292:134,158:134:4812:158:5661:-421.706,0,-44.3524	0/1:290:160,126:160:5736:126:4516:-320.153,0,-60.4718	0/1:116:47,69:47:1688:69:2484:-188.893,0,-11.3054	0/1:82:29,53:29:1040:53:1889:-145.602,0,-4.01066	0/1:154:73,81:73:2608:81:2908:-215.464,0,-21.6074	0/1:205:81,124:81:2900:124:4434:-337.518,0,-20.2024	0/1:176:108,68:108:3852:68:2433:-166.244,0,-54.7369	0/1:121:47,74:47:1664:74:2664:-203.58,0,-6.01441	0/1:158:85,73:85:3003:73:2618:-188.304,0,-29.1837	0/1:202:115,86:115:4128:86:3092:-217.897,0,-54.3442	0/1:196:93,103:93:3336:103:3700:-274.199,0,-32.3484	0/1:147:62,85:62:2208:85:3052:-230.657,0,-16.9779	0/1:153:81,72:81:2895:72:2582:-186.572,0,-28.7967	0/1:163:70,93:70:2512:93:3344:-252.108,0,-19.8995	0/1:106:39,67:39:1396:67:2385:-182.993,0,-6.40294	0/1:95:39,56:39:1392:56:2008:-152.395,0,-9.98256	0/1:131:47,84:47:1675:84:3016:-232.235,0,-7.05034	0/1:313:167,146:167:5947:146:5218:-375.533,0,-59.6266	0/1:284:144,140:144:5124:140:5001:-364.743,0,-56.2699	0/1:91:58,33:58:2084:33:1176:-78.7534,0,-24.8536	0/1:193:93,100:93:3320:100:3541:-260.797,0,-26.1488	0/1:157:72,85:72:2588:85:3056:-228.007,0,-24.1341	0/1:138:75,63:75:2676:63:2260:-162.12,0,-32.4526	0/1:328:142,184:142:5096:184:6567:-491.545,0,-29.3671	0/1:386:249,137:249:8891:137:4888:-323.645,0,-129.297	0/1:83:41,42:41:1476:42:1512:-111.389,0,-15.3978	0/1:329:183,146:183:6535:146:5221:-370.988,0,-67.9195	0/1:143:57,86:57:2048:86:3081:-234.458,0,-13.2463	0/1:176:81,94:81:2895:94:3384:-251.034,0,-20.0612	0/1:16:8,8:8:284:8:284:-21.0869,0,-3.20257	0/1:39:27,12:27:954:12:432:-27.481,0,-15.0534	0/1:3:1,2:1:36:2:72:-5.93363,0,-0.195648	0/1:30:11,19:11:396:19:684:-52.8594,0,-1.95648	0/1:35:24,11:24:860:11:396:-25.4467,0,-13.2147	0/1:381:186,195:186:6664:195:6998:-515.186,0,-55.6196	0/1:96:32,64:32:1148:64:2270:-175.66,0,-2.76286	0/1:111:46,65:46:1656:65:2324:-176.005,0,-12.0034	0/1:5:2,3:2:72:3:108:-8.57002,0,-0.582451	0/1:233:104,129:104:3720:129:4640:-347.62,0,-32.3526	0/1:108:59,49:59:2116:49:1764:-126.533,0,-26.7151	0/1:185:82,103:82:2940:103:3659:-273.82,0,-26.7184	0/1:178:75,102:75:2670:102:3660:-276.218,0,-14.5826	0/1:150:78,71:78:2796:71:2552:-184.717,0,-26.5126	0/1:151:79,72:79:2832:72:2588:-187.713,0,-25.6706	0/1:130:65,65:65:2324:65:2340:-171.725,0,-24.4362	0/1:206:91,115:91:3227:115:4090:-306.266,0,-20.1576	0/1:155:66,89:66:2376:89:3204:-241.922,0,-12.8719	0/1:133:65,68:65:2324:68:2444:-177.834,0,-18.5002	0/1:183:92,91:92:3288:91:3270:-239.429,0,-27.7222	0/1:23:15,8:15:540:8:288:-19.3437,0,-6.66297	0/1:244:97,147:97:3461:147:5254:-399.541,0,-22.269	0/1:75:51,24:51:1828:24:864:-55.4829,0,-23.4645	0/1:15:9,6:9:324:6:216:-15.2751,0,-4.4942	0/1:190:88,102:88:3144:102:3660:-272.407,0,-29.6547	0/1:94:61,33:61:2175:33:1180:-78.2112,0,-26.819	0/1:20:11,9:11:396:9:324:-23.4853,0,-3.96959	0/1:15:6,9:6:216:9:309:-23.6253,0,-0.979156	0/1:154:71,83:71:2523:83:2958:-220.092,0,-24.3672	0/1:171:82,89:82:2936:89:3185:-235.396,0,-22.4359	0/1:10:5,5:5:180:5:180:-13.5418,0,-1.58519	0/1:134:57,77:57:2044:77:2772:-209.382,0,-11.0089	0/1:191:102,89:102:3641:89:3183:-229.196,0,-34.4614	0/1:101:49,52:49:1752:52:1842:-133.308,0,-17.8852	0/1:114:46,68:46:1648:68:2440:-185.538,0,-9.7533	0/1:214:109,105:109:3882:105:3772:-275.257,0,-34.0225	0/1:173:86,87:86:3076:87:3132:-230.027,0,-25.7877	0/1:111:51,60:51:1832:60:2156:-160.893,0,-16.7661	0/1:136:74,62:74:2648:62:2232:-160.2,0,-32.0692	1/1:112:37,75:37:1328:75:2681:-208.167,-0.34945,0	0/1:49:27,22:27:960:22:792:-56.8552,0,-9.71171	0/1:120:62,58:62:2200:58:2080:-151.347,0,-25.1027	0/1:142:79,63:79:2823:63:2247:-159.746,0,-35.1118	0/1:339:190,149:190:6791:149:5325:-376.706,0,-85.1117	0/1:226:121,105:121:4324:105:3763:-270.835,0,-41.209	0/1:150:58,92:58:2080:92:3308:-251.594,0,-11.7665	0/1:135:56,79:56:1993:79:2840:-215.199,0,-14.8104	0/1:26:12,14:12:432:14:500:-37.5094,0,-4.14946	0/1:185:86,99:86:3071:99:3548:-263.838,0,-28.998	0/1:211:111,100:111:3976:100:3596:-260.222,0,-45.8987	0/1:328:157,171:157:5607:171:6113:-451.532,0,-45.2951	0/1:145:64,81:64:2283:81:2912:-218.665,0,-14.4331	0/1:171:93,78:93:3324:78:2808:-201.483,0,-32.4134	0/1:141:48,93:48:1724:93:3344:-258.731,0,-0.900927	0/1:267:139,128:139:4944:128:4595:-333.321,0,-45.2208	0/1:62:23,39:23:824:39:1404:-107.995,0,-4.18816	0/1:155:78,77:78:2796:77:2768:-202.701,0,-30.3971	0/1:151:73,78:73:2611:78:2777:-204.714,0,-27.9575	0/1:135:63,72:63:2244:72:2588:-192.529,0,-23.3832	0/1:215:106,109:106:3775:109:3908:-287.19,0,-39.5576	0/1:166:76,90:76:2708:90:3236:-241.4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chr02	3184018	.	G	A	25845.5	PASS	AB=0.485553;ABP=8.78271;AC=33;AF=0.175532;AN=188;AO=1555;CIGAR=1X;DP=8937;DPB=8937;DPRA=1.05328;EPP=3379.65;EPPR=16011.1;GTI=1;LEN=1;MEANALT=1.02564;MQM=59.9897;MQMR=59.9943;NS=94;NUMALT=1;ODDS=0.208827;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55706;QR=263099;RO=7372;RPL=0;RPP=3379.65;RPPR=16011.1;RPR=1555;RUN=1;SAF=1555;SAP=3379.65;SAR=0;SRF=7372;SRP=16011.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:202:200,0:200:7157:0:0:0,-60.206,-643.808	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.432	0/1:181:108,73:108:3864:73:2616:-181.201,0,-293.469	0/1:52:42,10:42:1512:10:360:-17.0907,0,-120.721	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	0/0:112:111,0:111:3942:0:0:0,-33.4143,-354.611	0/0:137:137,0:137:4783:0:0:0,-41.2411,-430.627	0/0:109:109,0:109:3892:0:0:0,-32.8123,-350.475	0/0:119:119,0:119:4230:0:0:0,-35.8226,-380.872	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/0:45:43,0:43:1544:0:0:0,-12.9443,-138.893	0/1:69:30,38:30:1080:38:1360:-101.871,0,-76.6834	0/1:64:41,23:41:1468:23:828:-55.5782,0,-113.15	0/1:46:23,23:23:809:23:828:-60.9967,0,-59.2809	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:55:15,40:15:540:40:1436:-112.981,0,-32.3799	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:189:104,85:104:3740:85:3029:-215.945,0,-279.904	0/1:156:81,75:81:2873:75:2673:-193.853,0,-211.846	0/0:131:131,0:131:4635:0:0:0,-39.4349,-417.313	0/0:98:98,0:98:3477:0:0:0,-29.5009,-313.142	0/1:137:79,58:79:2813:58:2080:-146.229,0,-212.167	0/0:79:79,0:79:2809:0:0:0,-23.7814,-253.049	0/0:310:310,0:310:11109:0:0:0,-93.3193,-999.697	0/0:175:175,0:175:6260:0:0:0,-52.6802,-563.495	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/0:279:279,0:279:9940:0:0:0,-83.9874,-894.539	0/0:166:166,0:166:5948:0:0:0,-49.971,-535.427	0/1:161:78,83:78:2784:83:2968:-218.887,0,-202.335	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:16:11,5:11:373:5:165:-10.3571,0,-29.0788	0/1:12:10,2:10:360:2:68:-2.84535,0,-29.1319	0/0:200:200,0:200:7078:0:0:0,-60.206,-637.08	0/1:209:109,100:109:3889:100:3580:-259.436,0,-287.288	0/1:56:33,23:33:1176:23:828:-57.9864,0,-89.2901	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:147:147,0:147:5272:0:0:0,-44.2514,-474.615	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:174:173,1:173:6154:1:36:0,-48.7809,-550.362	0/0:82:81,1:81:2904:1:36:0,-21.0862,-257.997	0/1:55:26,29:26:936:29:1044:-77.7182,0,-68.0028	0/0:94:93,0:93:3340:0:0:0,-27.9958,-300.605	0/1:132:66,66:66:2334:66:2356:-172.563,0,-170.581	0/0:160:160,0:160:5705:0:0:0,-48.1648,-513.569	0/0:131:131,0:131:4665:0:0:0,-39.4349,-420.012	0/0:164:164,0:164:5888:0:0:0,-49.3689,-530.028	0/0:171:171,0:171:6136:0:0:0,-51.4761,-552.338	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:154:152,0:152:5444:0:0:0,-45.7566,-489.729	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:135:65,70:65:2317:70:2512:-185.693,0,-168.15	0/1:60:30,30:30:1072:30:1076:-79.0911,0,-78.7307	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:48:48,0:48:1694:0:0:0,-14.4494,-152.742	0/1:124:62,62:62:2216:62:2228:-163.456,0,-162.377	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:181:181,0:181:6512:0:0:0,-54.4864,-586.16	0/1:188:106,82:106:3765:82:2936:-207.881,0,-282.457	0/0:55:54,1:54:1920:1:36:0,-12.9584,-169.479	0/0:101:100,1:100:3562:1:36:0,-26.8058,-317.187	0/1:202:113,89:113:4048:89:3196:-227.055,0,-303.699	0/0:109:107,2:107:3810:2:72:0,-25.9755,-336.259	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:60:27,33:27:953:33:1182:-88.6261,0,-68.0215	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.123	0/1:77:51,26:51:1832:26:932:-61.0196,0,-141.981	0/0:174:173,0:173:6204:0:0:0,-52.0782,-558.073	0/0:188:188,0:188:6706:0:0:0,-56.5936,-603.615	0/0:86:86,0:86:3065:0:0:0,-25.8886,-276.078	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.23	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:116:113,3:113:4056:3:108:0,-24.8443,-355.151	0/1:87:40,47:40:1440:47:1680:-125.298,0,-103.708	0/1:227:92,135:92:3254:135:4825:-366.071,0,-224.746	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.618	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/1:62:33,29:33:1176:29:1044:-75.6109,0,-87.4839	0/1:126:54,72:54:1929:72:2588:-195.239,0,-135.955	0/1:51:27,24:27:968:24:864:-62.73,0,-72.0848	0/0:74:74,0:74:2645:0:0:0,-22.2762,-238.295	0/0:64:64,0:64:2252:0:0:0,-19.2659,-202.942	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:52:20,32:20:720:32:1152:-88.3366,0,-49.4752	0/1:89:33,56:33:1169:56:2012:-154.561,0,-78.7236	0/0:92:92,0:92:3258:0:0:0,-27.6948,-293.44	0/0:92:92,0:92:3287:0:0:0,-27.6948,-296.049
chr02	3257239	.	A	G	133793	PASS	AB=0.505757;ABP=3.71031;AC=155;AF=0.824468;AN=188;AO=6177;CIGAR=1X;DP=7386;DPB=7386;DPRA=0;EPP=13416.2;EPPR=2617.47;GTI=1;LEN=1;MEANALT=1.01064;MQM=58.7181;MQMR=54.0613;NS=94;NUMALT=1;ODDS=0.702819;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219474;QR=43174;RO=1208;RPL=0;RPP=13416.2;RPPR=2617.47;RPR=6177;RUN=1;SAF=0;SAP=13416.2;SAR=6177;SRF=0;SRP=2626.15;SRR=1208;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:928:-83.8283,-7.82678,0	1/1:86:0,86:0:0:86:3051:-274.78,-25.8886,0	1/1:99:0,99:0:0:99:3536:-318.01,-29.802,0	0/1:152:78,74:78:2791:74:2640:-192.017,0,-205.124	0/1:21:4,17:4:144:17:612:-49.0227,0,-6.96663	0/1:50:18,32:18:639:32:1137:-86.7945,0,-42.6072	1/1:79:0,79:0:0:79:2763:-248.885,-23.7814,0	1/1:127:1,126:1:36:126:4493:-400.4,-34.6376,0	1/1:58:0,58:0:0:58:2067:-186.1,-17.4597,0	1/1:132:2,130:2:72:130:4628:-409.476,-32.9042,0	1/1:73:0,73:0:0:73:2591:-233.434,-21.9752,0	1/1:101:0,101:0:0:101:3589:-322.985,-30.404,0	1/1:70:0,70:0:0:70:2473:-222.628,-21.0721,0	0/1:81:38,43:38:1356:43:1525:-112.973,0,-97.7425	0/1:75:43,32:43:1548:32:1099:-76.5948,0,-116.596	0/1:54:22,32:22:788:32:1143:-86.8926,0,-54.5662	1/1:91:0,91:0:0:91:3218:-289.493,-27.3937,0	0/1:63:27,36:27:972:36:1264:-95.0822,0,-68.7116	1/1:46:0,46:0:0:46:1608:-144.708,-13.8474,0	0/1:83:40,43:40:1423:43:1517:-111.514,0,-103.12	0/1:134:71,63:71:2531:63:2233:-160.678,0,-187.046	1/1:62:0,62:0:0:62:2201:-197.825,-18.6639,0	1/1:44:1,43:1:36:43:1524:-133.809,-9.64964,0	0/1:69:39,30:39:1391:30:1074:-76.1032,0,-104.36	1/1:50:0,50:0:0:50:1779:-160.349,-15.0515,0	1/1:274:0,274:0:0:274:9764:-878.536,-82.4822,0	1/1:100:0,100:0:0:100:3562:-320.637,-30.103,0	1/1:36:0,36:0:0:36:1288:-116.079,-10.8371,0	1/1:130:0,130:0:0:130:4633:-416.93,-39.1339,0	1/1:108:0,108:0:0:108:3835:-344.92,-32.5112,0	0/1:93:38,55:38:1368:55:1963:-148.856,0,-93.7962	1/1:10:0,10:0:0:10:356:-32.3717,-3.0103,0	1/1:8:0,8:0:0:8:288:-26.2615,-2.40824,0	1/1:12:0,12:0:0:12:419:-38.0369,-3.61236,0	0/1:2:1,1:1:36:1:36:-2.99577,0,-2.99111	0/1:7:5,2:5:180:2:72:-4.72867,0,-14.4245	1/1:223:0,223:0:0:223:7941:-714.369,-67.1297,0	1/1:158:0,158:0:0:158:5640:-507.177,-47.5627,0	0/1:76:39,37:39:1400:37:1310:-95.3087,0,-102.193	0/1:3:1,2:1:36:2:72:-5.93172,0,-2.68833	1/1:110:0,110:0:0:110:3881:-348.899,-33.1133,0	1/1:41:0,41:0:0:41:1476:-133.071,-12.3422,0	1/1:89:0,89:0:0:89:3138:-282.442,-26.7917,0	1/1:85:0,85:0:0:85:3026:-272.521,-25.5876,0	0/1:71:30,41:30:1080:41:1457:-110.005,0,-75.9999	1/1:67:0,67:0:0:67:2377:-214.017,-20.169,0	0/1:58:32,26:32:1148:26:908:-64.5596,0,-85.7473	1/1:114:0,114:0:0:114:4038:-363.444,-34.3174,0	1/1:74:0,74:0:0:74:2629:-236.468,-22.2762,0	1/1:130:0,130:0:0:130:4643:-417.782,-39.1339,0	1/1:86:0,86:0:0:86:3084:-277.746,-25.8886,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4329	1/1:79:0,79:0:0:79:2824:-254.363,-23.7814,0	1/1:38:0,38:0:0:38:1335:-120.395,-11.4391,0	1/1:16:0,16:0:0:16:576:-52.1685,-4.81648,0	0/1:109:63,46:63:2240:46:1625:-113.677,0,-168.532	0/1:18:7,11:7:243:11:396:-30.5572,0,-16.7744	1/1:1:0,1:0:0:1:36:-3.57343,-0.30103,0	0/1:13:8,5:8:288:5:180:-12.6367,0,-22.2894	1/1:84:0,84:0:0:84:2992:-269.328,-25.2865,0	0/1:130:63,67:63:2255:67:2366:-174.017,0,-162.952	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:188:0,188:0:0:188:6681:-601.229,-56.5936,0	0/1:143:73,70:73:2608:70:2487:-180.918,0,-190.24	1/1:49:0,49:0:0:49:1764:-158.865,-14.7505,0	1/1:55:1,54:1:36:54:1927:-169.992,-12.9652,0	0/1:124:66,58:66:2358:58:2072:-149.368,0,-174.437	1/1:76:0,76:0:0:76:2696:-242.803,-22.8783,0	1/1:19:0,19:0:0:19:684:-61.8744,-5.71957,0	1/1:49:0,49:0:0:49:1740:-156.867,-14.7505,0	0/1:92:38,54:38:1368:54:1898:-143.396,0,-95.6909	1/1:20:0,20:0:0:20:711:-63.8814,-6.0206,0	1/1:99:0,99:0:0:99:3517:-316.641,-29.802,0	0/1:54:32,22:32:1152:22:788:-54.9251,0,-87.3839	1/1:140:0,140:0:0:140:4949:-445.357,-42.1442,0	1/1:120:0,120:0:0:120:4271:-384.56,-36.1236,0	1/1:97:0,97:0:0:97:3456:-311.201,-29.1999,0	1/1:107:2,105:2:72:105:3745:-329.999,-25.3832,0	1/1:13:0,13:0:0:13:468:-42.4544,-3.91339,0	1/1:86:0,86:0:0:86:3063:-275.619,-25.8886,0	0/1:93:41,52:41:1468:52:1828:-136.784,0,-104.075	0/1:85:48,36:48:1724:36:1283:-90.1246,0,-129.359	1/1:147:0,147:0:0:147:5211:-469.077,-44.2514,0	1/1:64:0,64:0:0:64:2277:-205.125,-19.2659,0	0/1:94:44,50:44:1561:50:1775:-131.728,0,-111.227	0/1:155:72,83:72:2571:83:2915:-215.893,0,-184.689	0/1:53:17,36:17:594:36:1259:-97.5278,0,-37.5932	1/1:85:0,85:0:0:85:2986:-268.712,-25.5876,0	1/1:79:0,79:0:0:79:2796:-251.718,-23.7814,0	1/1:43:0,43:0:0:43:1536:-138.407,-12.9443,0	0/1:109:56,53:56:1985:53:1900:-138.306,0,-145.302	0/1:61:42,19:42:1496:19:684:-43.5229,0,-115.623	1/1:80:0,80:0:0:80:2861:-257.548,-24.0824,0	1/1:119:0,119:0:0:119:4247:-382.357,-35.8226,0
chr02	3509804	.	A	G	15218.1	PASS	AB=0.498151;ABP=3.06651;AC=35;AF=0.18617;AN=188;AO=949;CIGAR=1X;DP=5208;DPB=5208;DPRA=1.11687;EPP=2055.06;EPPR=9223.1;GTI=1;LEN=1;MEANALT=1;MQM=59.9579;MQMR=59.9878;NS=94;NUMALT=1;ODDS=3.82255;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33339;QR=150927;RO=4258;RPL=948;RPP=2055.06;RPPR=9223.1;RPR=1;RUN=1;SAF=949;SAP=2063.74;SAR=0;SRF=4258;SRP=9249.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1371:0:0:0,-11.7402,-123.688	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.631	0/0:45:44,1:44:1568:1:36:0,-9.94807,-137.813	0/1:73:24,49:24:856:49:1733:-134.279,0,-55.3859	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/1:11:4,7:4:144:7:238:-18.4386,0,-10.0023	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:96:95,1:95:3359:1:36:0,-25.3006,-298.928	0/0:127:126,1:126:4462:1:36:0,-34.6325,-398.156	0/0:66:66,0:66:2305:0:0:0,-19.868,-207.704	0/1:77:48,29:48:1694:29:1027:-69.5583,0,-129.565	0/1:73:38,35:38:1352:35:1232:-89.2061,0,-100.005	0/1:88:43,45:43:1523:45:1577:-115.726,0,-110.872	0/0:36:36,0:36:1255:0:0:0,-10.8371,-113.251	0/1:40:24,16:24:856:16:550:-37.7822,0,-65.3199	0/0:60:60,0:60:2084:0:0:0,-18.0618,-187.829	0/1:58:31,27:31:1108:27:955:-68.8051,0,-82.5713	0/1:78:39,39:39:1365:39:1378:-100.837,0,-99.6096	0/0:49:49,0:49:1740:0:0:0,-14.7505,-156.884	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/1:32:23,9:23:824:9:324:-19.8729,0,-64.8504	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:96:96,0:96:3387:0:0:0,-28.8989,-305.046	0/0:132:132,0:132:4712:0:0:0,-39.736,-424.241	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.894	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.517	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:57:33,24:33:1176:24:842:-58.9389,0,-88.9891	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:15:3,12:3:108:12:428:-34.3434,0,-5.55972	0/0:183:183,0:183:6437:0:0:0,-55.0885,-579.425	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/1:80:36,44:36:1288:44:1520:-113.004,0,-92.1412	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:53:53,0:53:1878:0:0:0,-15.9546,-169.297	0/0:37:37,0:37:1307:0:0:0,-11.1381,-117.931	0/0:67:67,0:67:2368:0:0:0,-20.169,-213.377	0/1:68:30,38:30:1068:38:1325:-99.0748,0,-75.962	0/0:62:61,1:61:2184:1:27:0,-15.9641,-194.126	0/1:35:20,15:20:712:15:521:-36.6721,0,-53.8706	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:53:53,0:53:1872:0:0:0,-15.9546,-168.756	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:60:60,0:60:2122:0:0:0,-18.0618,-191.248	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:71:27,44:27:960:44:1563:-119.588,0,-65.3431	0/1:17:7,10:7:248:10:343:-26.0831,0,-17.5467	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1143	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:89:45,44:45:1599:44:1529:-111.105,0,-117.408	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:66:66,0:66:2328:0:0:0,-19.868,-209.779	0/1:61:19,42:19:672:42:1492:-116.212,0,-42.444	0/1:30:25,5:25:888:5:180:-7.52116,0,-71.2066	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:59:39,20:39:1396:20:703:-45.8327,0,-108.178	0/0:64:64,0:64:2267:0:0:0,-19.2659,-204.293	0/0:59:58,1:58:2023:1:36:0,-14.1625,-178.742	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:43:24,19:24:841:19:671:-47.7706,0,-63.0621	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:74:74,0:74:2598:0:0:0,-22.2762,-234.067	0/1:100:53,47:53:1863:47:1665:-120.032,0,-137.843	0/0:60:60,0:60:2127:0:0:0,-18.0618,-191.695	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/0:56:56,0:56:1977:0:0:0,-16.8577,-178.203	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:65:65,0:65:2308:0:0:0,-19.5669,-207.977	0/1:43:17,26:17:599:26:928:-70.894,0,-41.2938	0/1:62:32,30:32:1123:30:1047:-75.8735,0,-82.7133	0/0:88:88,0:88:3110:0:0:0,-26.4906,-280.126	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.757	0/1:50:29,21:29:1024:21:739:-51.7628,0,-77.4211	0/1:144:76,68:76:2701:68:2400:-172.908,0,-199.985	0/1:30:15,15:15:536:15:518:-37.9138,0,-39.5439	0/0:78:77,0:77:2719:0:0:0,-23.1793,-244.731	0/0:109:109,0:109:3829:0:0:0,-32.8123,-344.809	0/0:85:85,0:85:3022:0:0:0,-25.5875,-272.211	0/1:161:81,80:81:2864:80:2780:-201.972,0,-209.531	0/1:88:31,57:31:1104:57:1988:-152.697,0,-73.18	0/0:18:18,0:18:623:0:0:0,-5.41854,-56.3931	0/0:132:131,1:131:4631:1:36:0,-36.1377,-413.358
chr02	3509861	.	A	G	155893	PASS	AB=0.548332;ABP=61.9926;AC=153;AF=0.822581;AN=186;AO=7002;CIGAR=1X;DP=8323;DPB=8323;DPRA=0;EPP=14571.7;EPPR=2746.87;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.9743;MQMR=59.997;NS=93;NUMALT=1;ODDS=1.7825;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=249846;QR=46947;RO=1319;RPL=6928;RPP=14571.7;RPPR=2746.87;RPR=74;RUN=1;SAF=0;SAP=15207.7;SAR=7002;SRF=0;SRP=2867.18;SRR=1319;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:103:0,103:0:0:103:3692:-332.478,-31.0061,0	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	0/1:221:96,125:96:3421:125:4447:-333.874,0,-241.576	0/1:66:25,41:25:888:41:1448:-110.745,0,-60.371	0/1:43:26,17:26:928:17:612:-42.4691,0,-70.894	1/1:103:0,103:0:0:103:3692:-332.482,-31.0061,0	1/1:120:0,120:0:0:120:4289:-385.998,-36.1236,0	1/1:107:0,107:0:0:107:3836:-345.436,-32.2102,0	1/1:109:0,108:0:0:108:3876:-348.674,-32.5112,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:61:0,61:0:0:61:2152:-193.946,-18.3628,0	1/1:76:0,76:0:0:76:2718:-244.856,-22.8783,0	0/1:61:30,31:30:1072:31:1112:-82.0281,0,-78.4296	0/1:69:30,39:30:1080:39:1383:-103.997,0,-76.7422	0/1:46:26,20:26:916:20:701:-49.5643,0,-68.9091	1/1:73:1,72:1:36:72:2562:-227.21,-18.3769,0	0/1:51:23,28:23:820:28:991:-74.151,0,-58.77	1/1:34:0,34:0:0:34:1192:-107.582,-10.235,0	0/1:149:67,82:67:2404:82:2936:-219.621,0,-171.763	0/1:163:64,99:64:2274:99:3543:-270.01,0,-155.851	1/1:134:0,134:0:0:134:4741:-426.848,-40.338,0	1/1:119:1,118:1:36:118:4211:-375.465,-32.2243,0	0/1:116:60,56:60:2144:56:2000:-145.354,0,-158.308	1/1:85:0,85:0:0:85:3043:-274.099,-25.5876,0	1/1:292:0,292:0:0:292:10397:-935.651,-87.9008,0	1/1:157:0,157:0:0:157:5592:-503.404,-47.2617,0	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	1/1:244:0,244:0:0:244:8710:-783.838,-73.4513,0	1/1:129:0,129:0:0:129:4616:-415.604,-38.8329,0	0/1:100:35,65:35:1240:65:2332:-180.037,0,-81.8015	1/1:6:0,6:0:0:6:203:-18.6003,-1.80618,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:6:4,2:4:140:2:68:-4.65153,0,-11.1384	1/1:236:0,236:0:0:236:8408:-756.726,-71.0431,0	1/1:161:0,161:0:0:161:5739:-516.627,-48.4658,0	0/1:72:36,36:36:1292:36:1283:-94.0985,0,-94.9096	.:.:.:.:.:.:.:.	1/1:131:1,130:1:21:130:4664:-417.821,-37.335,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:137:0,137:0:0:137:4873:-438.722,-41.2411,0	1/1:90:0,90:0:0:90:3220:-290.023,-27.0927,0	0/1:95:39,56:39:1404:56:1983:-150.146,0,-98.061	1/1:45:0,45:0:0:45:1612:-145.369,-13.5464,0	0/1:64:33,31:33:1180:31:1099:-79.9251,0,-87.2421	1/1:193:1,192:1:36:192:6835:-611.623,-54.5005,0	1/1:129:0,129:0:0:129:4615:-415.513,-38.8329,0	1/1:181:0,181:0:0:181:6457:-581.217,-54.4864,0	1/1:125:1,124:1:36:124:4427:-395.003,-34.0305,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	1/1:92:1,91:1:36:91:3254:-289.481,-24.0965,0	1/1:79:0,79:0:0:79:2816:-253.678,-23.7814,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:78:42,36:42:1500:36:1288:-92.7432,0,-111.814	0/1:55:22,33:22:788:33:1165:-88.5984,0,-54.6881	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:37:20,17:20:720:17:604:-43.5525,0,-53.9907	1/1:84:0,83:0:0:83:2984:-268.432,-24.9855,0	0/1:103:45,58:45:1612:58:2056:-154.303,0,-114.364	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:165:0,165:0:0:165:5900:-531.11,-49.67,0	0/1:269:110,159:110:3875:159:5681:-430.426,0,-267.968	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	0/1:137:55,82:55:1957:82:2944:-223.823,0,-135.163	1/1:36:0,36:0:0:36:1276:-115.142,-10.8371,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:71:32,39:32:1122:39:1392:-104.206,0,-79.9107	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:65:32,33:32:1148:33:1178:-86.7611,0,-84.0629	1/1:142:0,142:0:0:142:5081:-457.433,-42.7463,0	1/1:147:0,147:0:0:147:5235:-471.288,-44.2514,0	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:103:0,103:0:0:103:3672:-330.684,-31.0061,0	0/1:87:38,49:38:1364:49:1739:-130.604,0,-96.8711	0/1:171:76,95:76:2678:95:3394:-254.198,0,-189.788	1/1:107:0,107:0:0:107:3808:-342.917,-32.2102,0	1/1:59:0,59:0:0:59:2071:-186.659,-17.7608,0	0/1:106:55,51:55:1956:51:1811:-131.362,0,-144.407	0/1:183:72,111:72:2572:111:3936:-299.345,0,-176.641	0/1:48:25,23:25:892:23:824:-60.0339,0,-66.1502	1/1:97:0,97:0:0:97:3451:-310.803,-29.1999,0	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:77:41,36:41:1455:36:1277:-92.0518,0,-108.065	0/1:76:41,35:41:1440:35:1256:-90.467,0,-107.015	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:123:0,123:0:0:123:4397:-395.902,-37.0267,0
chr02	3519259	.	GATA	GATG,AATG	207043	PASS	AB=0.505747,0.493321;ABP=3.9338,4.2576;AC=153,33;AF=0.822581,0.177419;AN=186;AO=8547,1600;CIGAR=3M1X,1X2M1X;DP=10175;DPB=10175;DPRA=0,1.02212;EPP=18467.2,3468.69;EPPR=9.52472;GTI=3;LEN=1,4;MEANALT=1.64516,2.2;MQM=41.9037,29.8056;MQMR=47;NS=93;NUMALT=2;ODDS=1.63535;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=305602,56682;QR=101;RO=3;RPL=8536,1599;RPP=18467.2,3468.69;RPPR=9.52472;RPR=11,1;RUN=1,1;SAF=8547,1600;SAP=18562.6,3477.37;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51,0:0:0:51,0:1815,0:-158.432,-15.3525,0,-158.432,-15.3525,-158.432	1/1:177:0,177,0:0:0:177,0:6333,0:-552.615,-53.2823,0,-552.615,-53.2823,-552.615	1/1:149:0,148,0:0:0:148,0:5250,0:-456.651,-44.5524,0,-456.651,-44.5524,-456.651	1/2:176:0,98,78:0:0:98,78:3507,2766:-455.951,-179.276,-149.775,-276.989,0,-253.509	1/2:67:0,39,28:0:0:39,28:1404,993:-176.851,-64.9701,-53.2299,-112.196,0,-103.768	1/2:59:0,26,33:0:0:26,33:936,1171:-147.63,-73.9405,-66.1137,-74.0081,0,-64.0741	1/1:104:0,104,0:0:0:104,0:3716,0:-325.992,-31.3071,0,-325.992,-31.3071,-325.992	1/1:233:0,229,2:0:0:229,2:8217,70:-717.212,-68.9359,0,-712.706,-64.4306,-712.104	1/1:122:0,122,0:0:0:122,0:4344,0:-380.894,-36.7257,0,-380.894,-36.7257,-380.894	1/1:105:0,103,0:0:0:103,0:3700,0:-322.622,-31.0061,0,-322.622,-31.0061,-322.622	1/1:57:0,57,0:0:0:57,0:2044,0:-178.87,-17.1587,0,-178.87,-17.1587,-178.87	1/1:75:0,75,0:0:0:75,0:2675,0:-234.828,-22.5773,0,-234.828,-22.5773,-234.828	1/1:111:0,111,0:0:0:111,0:3964,0:-346.001,-33.4143,0,-346.001,-33.4143,-346.001	1/2:92:0,46,46:0:0:46,46:1637,1638:-235.341,-106.103,-92.2558,-129.555,0,-115.708	1/2:91:0,55,36:0:0:55,36:1980,1283:-239.491,-83.0875,-66.5308,-156.716,0,-145.879	1/2:79:0,39,40:0:0:39,40:1404,1435:-203.535,-92.8487,-81.1085,-111.007,0,-98.9656	1/1:79:0,79,0:0:0:79,0:2828,0:-247.549,-23.7814,0,-247.549,-23.7814,-247.549	1/2:66:0,30,36:0:0:30,36:1057,1292:-163.989,-80.807,-71.7761,-83.4962,0,-72.6591	1/1:19:0,19,0:0:0:19,0:684,0:-59.6294,-5.71957,0,-59.6294,-5.71957,-59.6294	1/2:222:0,120,102:0:0:120,102:4275,3609:-572.554,-234.292,-198.168,-338.577,0,-307.872	1/2:194:0,80,114:0:0:80,114:2856,4026:-488.225,-261.386,-237.304,-227.162,0,-192.845	1/1:95:0,95,0:0:0:95,0:3377,0:-294.211,-28.5979,0,-294.211,-28.5979,-294.211	1/1:166:0,166,0:0:0:166,0:5951,0:-520.343,-49.971,0,-520.343,-49.971,-520.343	1/2:137:0,48,89:0:0:48,89:1724,3153:-341.446,-204.658,-190.208,-137.116,0,-110.325	1/1:84:0,84,0:0:0:84,0:3016,0:-265.886,-25.2865,0,-265.886,-25.2865,-265.886	1/1:262:0,260,0:0:0:260,0:9322,0:-810.617,-78.2678,0,-810.617,-78.2678,-810.617	1/1:223:0,222,0:0:0:222,0:7934,0:-694.86,-66.8287,0,-694.86,-66.8287,-694.86	1/1:37:0,37,0:0:0:37,0:1324,0:-116.587,-11.1381,0,-116.587,-11.1381,-116.587	1/1:235:0,232,1:0:0:232,1:8305,36:-721.815,-69.839,0,-719.577,-67.5964,-719.276	1/1:238:0,237,0:0:0:237,0:8484,0:-742.159,-71.3441,0,-742.159,-71.3441,-742.159	1/2:176:0,78,98:0:0:78,98:2779,3431:-442.561,-224.022,-200.542,-218.858,0,-189.357	.:.:.:.:.:.:.:.	1/1:11:0,11,0:0:0:11,0:381,0:-32.4789,-3.31133,0,-32.4789,-3.31133,-32.4789	1/1:4:0,4,0:0:0:4,0:144,0:-12.96,-1.20412,0,-12.96,-1.20412,-12.96	1/2:6:0,4,2:0:0:4,2:144,72:-16.1648,-4.75799,-3.55387,-11.7113,0,-11.1092	1/2:8:0,7,1:0:0:7,1:252,35:-22.5228,-2.50176,-0.394547,-20.3101,0,-20.009	1/1:164:0,164,0:0:0:164,0:5868,0:-509.232,-49.3689,0,-509.232,-49.3689,-509.232	1/1:212:0,212,0:0:0:212,0:7595,0:-666.162,-63.8184,0,-666.162,-63.8184,-666.162	1/2:36:0,21,13:0:0:21,13:752,468:-88.7018,-29.0933,-22.7716,-59.6305,0,-55.7171	1/2:3:0,2,1:0:0:2,1:72,36:-8.36162,-2.60173,-1.99967,-6.07046,0,-5.76943	1/1:209:0,209,0:0:0:209,0:7508,0:-659.508,-62.9153,0,-659.508,-62.9153,-659.508	1/1:24:0,24,0:0:0:24,0:851,0:-75.317,-7.22472,0,-75.317,-7.22472,-75.317	1/1:222:0,222,0:0:0:222,0:7918,0:-692.93,-66.8287,0,-692.93,-66.8287,-692.93	1/1:58:0,56,0:0:0:56,0:2004,0:-175.223,-16.8577,0,-175.223,-16.8577,-175.223	1/2:62:0,42,20:0:0:42,20:1476,718:-162.414,-46.4796,-33.8364,-116.241,0,-110.22	1/1:89:0,88,0:0:0:88,0:3147,0:-273.516,-26.4906,0,-273.516,-26.4906,-273.516	1/2:187:0,105,82:0:0:105,82:3746,2890:-478.078,-181.545,-149.937,-296.843,0,-272.158	1/1:214:0,214,0:0:0:214,0:7629,0:-668.506,-64.4204,0,-668.506,-64.4204,-668.506	1/1:115:0,115,0:0:0:115,0:4108,0:-360.457,-34.6185,0,-360.457,-34.6185,-360.457	1/1:148:0,148,0:0:0:148,0:5320,0:-465.064,-44.5524,0,-465.064,-44.5524,-465.064	1/1:130:0,129,0:0:0:129,0:4617,0:-401.027,-38.8329,0,-401.027,-38.8329,-401.027	1/2:8:0,2,6:0:0:2,6:72,214:-19.691,-13.9723,-13.3703,-6.05307,0,-4.24689	1/1:235:0,233,1:0:0:233,1:8356,30:-729.778,-70.14,0,-727.697,-68.0681,-727.396	1/1:83:0,83,0:0:0:83,0:2951,0:-256.232,-24.9855,0,-256.232,-24.9855,-256.232	1/1:8:0,8,0:0:0:8,0:288,0:-25.5257,-2.40824,0,-25.5257,-2.40824,-25.5257	1/2:138:0,73,65:0:0:73,65:2593,2301:-355.156,-149.021,-127.046,-206.45,0,-186.883	1/2:57:0,24,33:0:0:24,33:860,1157:-143.636,-75.4554,-68.2307,-68.503,0,-58.569	1/1:1:0,1,0:0:0:1,0:36,0:-3.4807,-0.30103,0,-3.4807,-0.30103,-3.4807	1/2:5:0,2,3:0:0:2,3:72,107:-12.8835,-7.19676,-6.5947,-6.01126,0,-5.10817	1/1:106:0,106,0:0:0:106,0:3767,0:-330.043,-31.9092,0,-330.043,-31.9092,-330.043	1/2:93:0,40,53:0:0:40,53:1413,1883:-232.552,-121.876,-109.835,-110.994,0,-95.0394	1/1:2:0,2,0:0:0:2,0:72,0:-6.65513,-0.60206,0,-6.65513,-0.60206,-6.65513	1/1:164:0,164,0:0:0:164,0:5861,0:-509.547,-49.3689,0,-509.547,-49.3689,-509.547	1/2:204:0,117,87:0:0:117,87:4183,3089:-529.37,-200.241,-165.02,-329.442,0,-303.252	1/1:73:0,69,4:0:0:69,4:2461,143:-216.152,-20.7711,0,-206.929,-11.2553,-205.725	1/1:73:0,73,0:0:0:73,0:2628,0:-228.938,-21.9752,0,-228.938,-21.9752,-228.938	1/2:184:0,99,84:0:0:99,84:3518,2971:-470.133,-192.557,-162.755,-277.6,0,-252.313	1/1:156:0,152,0:0:0:152,0:5441,0:-474.288,-45.7566,0,-474.288,-45.7566,-474.288	1/1:24:0,24,0:0:0:24,0:864,0:-75.8469,-7.22472,0,-75.8469,-7.22472,-75.8469	1/1:82:0,82,0:0:0:82,0:2935,0:-257.68,-24.6845,0,-257.68,-24.6845,-257.68	1/2:99:0,45,54:0:0:45,54:1611,1924:-246.564,-120.997,-107.45,-125.883,0,-109.627	1/1:9:0,9,0:0:0:9,0:324,0:-28.7866,-2.70927,0,-28.7866,-2.70927,-28.7866	1/1:168:0,168,0:0:0:168,0:6013,0:-525.37,-50.573,0,-525.37,-50.573,-525.37	1/2:101:0,47,54:0:0:47,54:1676,1905:-251.928,-120.169,-106.021,-132.074,0,-115.818	1/1:252:0,252,0:0:0:252,0:9003,0:-790.158,-75.8596,0,-790.158,-75.8596,-790.158	1/1:155:0,155,0:0:0:155,0:5539,0:-483.908,-46.6597,0,-483.908,-46.6597,-483.908	1/1:214:0,214,0:0:0:214,0:7661,0:-669.861,-64.4204,0,-669.861,-64.4204,-669.861	1/1:180:1,176,2:1:29:176,2:6299,72:-548.001,-50.6649,0,-543.827,-48.4892,-545.533	1/1:8:0,8,0:0:0:8,0:288,0:-24.9477,-2.40824,0,-24.9477,-2.40824,-24.9477	1/1:161:0,160,1:0:0:160,1:5745,36:-505.105,-48.1648,0,-502.794,-45.5631,-502.493	1/2:136:0,75,61:0:0:75,61:2676,2168:-344.836,-136.041,-113.464,-209.103,0,-190.741	1/2:149:0,81,68:0:0:81,68:2900,2399:-382.657,-156.059,-131.675,-226.912,0,-206.442	1/1:95:0,94,1:0:0:94,1:3380,36:-295.792,-28.2968,0,-293.481,-25.6951,-293.18	1/1:77:0,77,0:0:0:77,0:2740,0:-239.595,-23.1793,0,-239.595,-23.1793,-239.595	1/2:89:0,38,51:0:0:38,51:1360,1818:-224.9,-117.624,-106.185,-107.599,0,-92.2461	1/2:116:0,57,59:0:0:57,59:2044,2084:-296.233,-136.019,-118.861,-160.532,0,-142.771	1/2:31:0,20,11:0:0:20,11:716,379:-80.919,-24.153,-18.1324,-57.0669,0,-53.7555	1/1:54:0,54,0:0:0:54,0:1928,0:-169.592,-16.2556,0,-169.592,-16.2556,-169.592	1/1:54:1,52,0:1:36:52,0:1864,0:-158.957,-12.7681,0,-159.258,-15.6536,-162.109	1/1:44:0,44,0:0:0:44,0:1557,0:-136.985,-13.2453,0,-136.985,-13.2453,-136.985	1/2:77:0,36,41:0:0:36,41:1287,1457:-195.397,-94.5695,-83.7324,-101.146,0,-88.8037	1/2:71:0,32,39:0:0:32,39:1144,1387:-180.113,-90.6103,-80.9773,-89.8232,0,-78.0831	1/1:147:1,146,0:1:36:146,0:5222,0:-448.215,-40.7487,0,-448.516,-43.9504,-451.367	1/1:109:0,109,0:0:0:109,0:3880,0:-339.374,-32.8123,0,-339.374,-32.8123,-339.374
chr02	3544537	.	CTG	TTG	96768	PASS	AB=0.509341;ABP=4.38954;AC=154;AF=0.819149;AN=188;AO=4496;CIGAR=1X2M;DP=5413;DPB=5413;DPRA=0;EPP=9765.95;EPPR=1952.99;GTI=2;LEN=1;MEANALT=1.17021;MQM=47.9448;MQMR=59.922;NS=94;NUMALT=1;ODDS=0.160075;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160763;QR=31649;RO=898;RPL=0;RPP=9765.95;RPPR=1952.99;RPR=4496;RUN=1;SAF=4496;SAP=9765.95;SAR=0;SRF=898;SRP=1952.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1572:-140.542,-13.2453,0	1/1:50:0,50:0:0:50:1789:-160.284,-15.0515,0	1/1:87:0,87:0:0:87:3101:-277.228,-26.1896,0	0/1:91:52,38:52:1839:38:1349:-93.2862,0,-138.464	0/1:45:23,22:23:821:22:792:-57.4943,0,-60.6664	0/1:14:5,9:5:180:9:309:-23.773,0,-12.3376	1/1:67:0,66:0:0:66:2335:-207.454,-19.868,0	1/1:90:1,89:1:36:89:3185:-280.979,-23.4944,0	1/1:95:0,95:0:0:95:3405:-304.321,-28.5979,0	1/1:51:0,50:0:0:50:1784:-159.339,-15.0515,0	1/1:49:0,49:0:0:49:1748:-155.189,-14.7505,0	1/1:105:0,104:0:0:104:3703:-330.741,-31.3071,0	1/1:78:1,76:1:28:76:2719:-240.209,-20.6769,0	0/1:35:17,18:17:595:18:648:-47.7158,0,-43.3395	0/1:68:34,34:34:1194:34:1214:-87.9005,0,-87.2929	0/1:49:25,24:25:900:24:864:-62.7979,0,-66.5256	1/1:16:0,16:0:0:16:560:-49.9712,-4.81648,0	0/1:35:14,21:14:495:21:752:-57.1101,0,-34.347	1/1:27:0,27:0:0:27:966:-86.2678,-8.12781,0	0/1:103:67,36:67:2366:36:1292:-84.593,0,-182.191	0/1:83:37,46:37:1308:46:1644:-122.052,0,-92.7652	1/1:27:0,27:0:0:27:949:-85.0928,-8.12781,0	1/1:63:1,62:1:36:62:2214:-193.731,-15.3666,0	0/1:24:5,18:5:175:18:648:-50.9857,0,-8.81129	1/1:73:0,73:0:0:73:2604:-232.714,-21.9752,0	1/1:89:0,88:0:0:88:3135:-278.651,-26.4906,0	1/1:173:0,171:0:0:171:6128:-547.139,-51.4761,0	1/1:37:0,37:0:0:37:1316:-117.175,-11.1381,0	1/1:85:0,85:0:0:85:3056:-272.943,-25.5876,0	1/1:36:0,36:0:0:36:1291:-115.461,-10.8371,0	0/1:54:26,28:26:913:28:993:-72.6309,0,-66.2296	1/1:8:0,8:0:0:8:288:-26.0861,-2.40824,0	1/1:10:0,10:0:0:10:360:-32.5183,-3.0103,0	1/1:3:0,3:0:0:3:108:-10.0205,-0.90309,0	0/1:3:1,2:1:36:2:72:-5.89657,0,-2.69518	0/1:13:10,3:10:358:3:108:-6.10716,0,-28.6495	1/1:155:0,155:0:0:155:5548:-493.754,-46.6597,0	1/1:38:0,38:0:0:38:1359:-121.542,-11.4391,0	0/1:57:31,26:31:1099:26:928:-65.9932,0,-82.061	0/1:4:3,1:3:106:1:36:-2.36931,0,-8.68498	1/1:68:0,68:0:0:68:2411:-215.522,-20.47,0	1/1:33:0,33:0:0:33:1188:-106.577,-9.93399,0	1/1:112:0,112:0:0:112:4006:-357.832,-33.7154,0	1/1:76:0,76:0:0:76:2722:-242.374,-22.8783,0	0/1:48:21,27:21:744:27:966:-71.8247,0,-52.8345	1/1:67:0,67:0:0:67:2400:-214.469,-20.169,0	0/1:64:36,28:36:1237:28:989:-69.6089,0,-92.361	1/1:86:1,85:1:36:85:3040:-267.653,-22.2903,0	1/1:44:0,44:0:0:44:1580:-141.293,-13.2453,0	1/1:58:0,58:0:0:58:2066:-184.354,-17.4597,0	1/1:45:0,45:0:0:45:1616:-144.469,-13.5464,0	0/1:9:3,6:3:108:6:216:-16.9082,0,-7.3659	1/1:114:0,114:0:0:114:4092:-365.985,-34.3174,0	1/1:22:0,22:0:0:22:792:-70.6366,-6.62266,0	1/1:3:0,3:0:0:3:108:-10.0205,-0.90309,0	0/1:71:23,48:23:799:48:1711:-131.704,0,-50.8537	0/1:22:16,6:16:572:6:212:-12.6158,0,-45.191	0/1:6:1,5:1:36:5:176:-14.2802,0,-1.79209	0/1:11:5,6:5:172:6:216:-16.3061,0,-12.5061	1/1:63:0,62:0:0:62:2202:-196.775,-18.6639,0	0/1:90:26,64:26:919:64:2296:-177.627,0,-55.9323	1/1:4:0,4:0:0:4:144:-13.1972,-1.20412,0	1/1:75:0,74:0:0:74:2660:-237.198,-22.2762,0	0/1:77:38,39:38:1341:39:1398:-101.406,0,-97.8101	1/1:49:2,47:2:72:47:1691:-144.344,-7.91375,0	1/1:45:0,45:0:0:45:1620:-144.841,-13.5464,0	0/1:79:32,47:32:1119:47:1673:-125.852,0,-77.2273	1/1:86:2,84:2:63:84:3001:-261.629,-19.9054,0	1/1:43:0,43:0:0:43:1539:-137.118,-12.9443,0	1/1:36:0,36:0:0:36:1288:-115.627,-10.8371,0	0/1:47:19,27:19:669:27:964:-71.8664,0,-46.3679	1/1:18:0,18:0:0:18:640:-57.3612,-5.41854,0	1/1:64:0,64:0:0:64:2303:-206.074,-19.2659,0	0/1:86:54,32:54:1855:32:1152:-77.6759,0,-141.336	1/1:62:0,59:0:0:59:2105:-187.955,-17.7608,0	1/1:90:0,90:0:0:90:3232:-288.502,-27.0927,0	1/1:60:0,59:0:0:59:2121:-189.009,-17.7608,0	1/1:53:1,52:1:36:52:1867:-163.557,-12.3563,0	1/1:12:0,12:0:0:12:432:-39.0259,-3.61236,0	1/1:77:0,77:0:0:77:2755:-246.297,-23.1793,0	0/1:69:30,39:30:1070:39:1403:-104.892,0,-75.8407	0/1:133:59,74:59:2091:74:2654:-196.89,0,-148.422	1/1:51:0,51:0:0:51:1814:-161.533,-15.3525,0	1/1:75:0,74:0:0:74:2658:-236.845,-22.2762,0	0/1:51:25,26:25:896:26:932:-67.9138,0,-65.608	0/1:119:71,47:71:2498:47:1676:-113.309,0,-189.19	0/1:19:11,8:11:386:8:288:-20.4223,0,-29.356	1/1:69:0,69:0:0:69:2474:-221.575,-20.7711,0	1/1:63:0,63:0:0:63:2259:-201.887,-18.9649,0	1/1:50:0,49:0:0:49:1748:-156.414,-14.7505,0	0/1:69:30,39:30:1078:39:1384:-103.074,0,-76.5597	0/1:72:39,33:39:1367:33:1175:-83.1981,0,-101.651	1/1:63:0,63:0:0:63:2230:-198.633,-18.9649,0	1/1:101:0,101:0:0:101:3606:-321.081,-30.404,0
chr02	3544569	.	ATATT	GTATA,ATATA	340109	PASS	AB=0.508466,0.487905;ABP=5.58413,8.26302;AC=154,34;AF=0.819149,0.180851;AN=188;AO=10319,2038;CIGAR=1X3M1X,4M1X;DP=12392;DPB=12393;DPRA=0,1.05638;EPP=22410.4,4428.47;EPPR=7.35324;GTI=0;LEN=5,1;MEANALT=1.80851,2.34091;MQM=51.0089,59.7365;MQMR=53;NS=94;NUMALT=2;ODDS=1.62433;PAIRED=0,0;PAIREDR=0;PAO=5,0;PQA=180,0;PQR=0;PRO=0;QA=364916,72953;QR=45;RO=2;RPL=4516,880;RPP=351.567,85.3558;RPPR=7.35324;RPR=5803,1158;RUN=1,1;SAF=4516,880;SAP=351.567,85.3558;SAR=5803,1158;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:100:0,100,0:0:0:100,0:3528,0:-314.815,-30.103,0,-314.815,-30.103,-314.815	1/1:238:0,236,0:0:0:236,0:8398,0:-750.328,-71.0431,0,-750.328,-71.0431,-750.328	1/1:177:0,176,0:0:0:176,0:6202,0:-554.376,-52.9813,0,-554.376,-52.9813,-554.376	1/2:209:0,98,111:0:0:98,111:3438,3954:-600.725,-322.547,-293.046,-278.53,0,-245.116	1/2:105:0,46,59:0:0:46,59:1613,2124:-303.963,-173.658,-159.811,-130.658,0,-112.897	1/2:50:0,23,27:0:0:23,27:822,972:-145.914,-79.6443,-72.7206,-66.6263,0,-58.4985	1/1:161:0,160,0:0:0:160,0:5625,0:-500.3,-48.1648,0,-500.3,-48.1648,-500.3	1/1:258:0,257,1:0:0:257,1:9081,36:-810.237,-77.3647,0,-807.299,-74.0675,-806.998	1/1:178:0,177,1:0:0:177,1:6247,36:-558.36,-53.2823,0,-555.423,-49.9851,-555.122	1/1:126:0,126,0:0:0:126,0:4432,0:-397.211,-37.9298,0,-397.211,-37.9298,-397.211	1/1:95:0,94,0:0:0:94,0:3288,0:-292.944,-28.2968,0,-292.944,-28.2968,-292.944	1/1:169:0,169,0:0:0:169,0:5975,0:-532.49,-50.8741,0,-532.49,-50.8741,-532.49	1/1:135:0,135,0:0:0:135,0:4750,0:-424.519,-40.6391,0,-424.519,-40.6391,-424.519	1/2:93:0,58,35:0:0:58,35:2047,1256:-268.433,-102.809,-85.3495,-165.98,0,-155.443	1/2:122:0,64,57:0:0:64,57:2284,2043:-351.126,-166.618,-147.352,-184.504,0,-167.345	1/2:81:0,39,42:0:0:39,42:1382,1497:-234.189,-122.322,-110.581,-112.221,0,-99.5778	1/1:82:0,82,0:0:0:82,0:2919,0:-259.341,-24.6845,0,-259.341,-24.6845,-259.341	1/2:86:0,49,35:0:0:49,35:1732,1252:-242.221,-102.08,-87.3296,-140.163,0,-129.627	1/1:52:0,52,0:0:0:52,0:1831,0:-163.569,-15.6536,0,-163.569,-15.6536,-163.569	1/2:241:0,106,134:0:0:106,134:3751,4796:-694.958,-391.104,-359.195,-303.858,0,-263.52	1/2:225:0,117,108:0:0:117,108:4125,3880:-648.942,-315.261,-280.04,-334.035,0,-301.524	1/1:68:0,68,0:0:0:68,0:2391,0:-213.962,-20.47,0,-213.962,-20.47,-213.962	1/1:153:0,151,2:0:0:151,2:5360,72:-478.937,-45.4555,0,-473.062,-39.2209,-472.46	1/2:119:0,63,56:0:0:63,56:2232,1997:-343.827,-163.144,-144.179,-181.038,0,-164.18	1/1:103:0,102,0:0:0:102,0:3605,0:-321.666,-30.7051,0,-321.666,-30.7051,-321.666	1/1:314:0,312,0:0:0:312,0:10962,0:-980.065,-93.9214,0,-980.065,-93.9214,-980.065	1/1:325:0,323,2:0:0:323,2:11393,72:-1017.85,-97.2327,0,-1011.97,-90.998,-1011.37	1/1:69:0,67,0:0:0:67,0:2387,0:-212.723,-20.169,0,-212.723,-20.169,-212.723	1/1:270:0,269,1:0:0:269,1:9578,36:-857.217,-80.9771,0,-854.28,-77.6798,-853.978	1/1:145:0,145,0:0:0:145,0:5142,0:-461.133,-43.6494,0,-461.133,-43.6494,-461.133	1/2:194:0,93,100:0:0:93,100:3290,3554:-555.408,-289.657,-261.661,-265.803,0,-235.7	1/1:10:0,10,0:0:0:10,0:360,0:-32.5542,-3.0103,0,-32.5542,-3.0103,-32.5542	1/1:24:0,21,2:0:0:21,2:753,72:-67.3358,-6.32163,0,-61.4606,-0.429987,-60.8585	1/1:15:0,15,0:0:0:15,0:526,0:-47.478,-4.51545,0,-47.478,-4.51545,-47.478	1/2:6:0,4,2:0:0:4,2:139,72:-17.4804,-6.23466,-5.03054,-11.601,0,-10.9989	1/2:17:0,4,13:0:0:4,13:144,468:-50.2347,-38.5463,-37.3421,-12.047,0,-8.1336	1/1:277:0,277,0:0:0:277,0:9845,0:-878.303,-83.3853,0,-878.303,-83.3853,-878.303	1/1:124:0,124,0:0:0:124,0:4387,0:-392.176,-37.3277,0,-392.176,-37.3277,-392.176	1/2:92:0,46,46:0:0:46,46:1629,1640:-265.715,-134.041,-120.194,-132.028,0,-118.181	1/2:5:0,2,3:0:0:2,3:66,104:-13.9113,-8.79971,-8.19765,-5.44104,0,-4.53795	1/1:198:0,198,0:0:0:198,0:6989,0:-626.101,-59.6039,0,-626.101,-59.6039,-626.101	1/1:65:0,65,0:0:0:65,0:2297,0:-205.812,-19.567,0,-205.812,-19.567,-205.812	1/1:219:0,219,0:0:0:219,0:7740,0:-692.151,-65.9256,0,-692.151,-65.9256,-692.151	1/1:145:0,145,0:0:0:145,0:5122,0:-457.815,-43.6494,0,-457.815,-43.6494,-457.815	1/2:85:0,46,38:0:0:46,38:1614,1364:-241.751,-111.262,-97.4144,-130.484,0,-119.045	1/1:115:0,115,0:0:0:115,0:4074,0:-364.282,-34.6185,0,-364.282,-34.6185,-364.282	1/2:178:1,94,83:1:22:94,83:3267,2984:-505.277,-241.045,-214.424,-262.918,0,-239.609	1/1:211:0,209,0:0:0:209,0:7403,0:-662.589,-62.9153,0,-662.589,-62.9153,-662.589	1/1:116:0,115,0:0:0:115,0:4052,0:-362.902,-34.6185,0,-362.902,-34.6185,-362.902	1/1:178:0,175,2:0:0:175,2:6231,72:-556.675,-52.6803,0,-550.8,-46.7821,-550.198	1/1:107:0,106,0:0:0:106,0:3743,0:-335.029,-31.9092,0,-335.029,-31.9092,-335.029	1/2:17:0,11,6:0:0:11,6:390,216:-49.5731,-17.9843,-14.673,-31.946,0,-30.1399	1/1:186:0,186,0:0:0:186,0:6616,0:-591.774,-55.9916,0,-591.774,-55.9916,-591.774	1/1:58:0,58,0:0:0:58,0:2056,0:-184.363,-17.4597,0,-184.363,-17.4597,-184.363	1/1:13:0,13,0:0:0:13,0:441,0:-39.9089,-3.91339,0,-39.9089,-3.91339,-39.9089	1/2:169:0,104,64:0:0:104,64:3647,2300:-483.085,-187.706,-156.399,-295.445,0,-27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chr02	3581412	.	G	C	20784.3	PASS	AB=0.49642;ABP=3.29016;AC=34;AF=0.180851;AN=188;AO=1256;CIGAR=1X;DP=8202;DPB=8202;DPRA=0.835003;EPP=2730.38;EPPR=15081.7;GTI=1;LEN=1;MEANALT=1.02703;MQM=59.9896;MQMR=59.9967;NS=94;NUMALT=1;ODDS=1.49523;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44841;QR=248784;RO=6944;RPL=1256;RPP=2730.38;RPPR=15081.7;RPR=0;RUN=1;SAF=0;SAP=2730.38;SAR=1256;SRF=0;SRP=15081.7;SRR=6944;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:67:67,0:67:2382:0:0:0,-20.169,-214.637	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:159:159,0:159:5704:0:0:0,-47.8638,-513.476	0/1:214:92,122:92:3296:122:4346:-326.892,0,-232.439	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	0/1:41:29,12:29:1029:12:424:-26.1542,0,-80.5789	0/0:92:92,0:92:3312:0:0:0,-27.6948,-298.297	0/0:121:121,0:121:4328:0:0:0,-36.4246,-389.696	0/0:136:136,0:136:4872:0:0:0,-40.9401,-438.633	0/0:118:118,0:118:4244:0:0:0,-35.5215,-382.137	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:86:86,0:86:3066:0:0:0,-25.8886,-276.168	0/1:31:16,15:16:576:15:536:-39.2429,0,-42.8431	0/1:85:47,38:47:1684:38:1368:-97.8333,0,-126.259	0/1:60:27,33:27:972:33:1165:-87.0932,0,-69.7361	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:38:15,23:15:540:23:828:-63.405,0,-37.4974	0/0:37:37,0:37:1307:0:0:0,-11.1381,-117.931	0/1:115:63,52:63:2260:52:1851:-132.249,0,-169.044	0/1:179:68,111:68:2436:111:3916:-298.742,0,-165.611	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/0:85:84,1:84:3004:1:36:0,-21.9893,-266.993	0/1:52:24,28:24:860:28:1004:-75.0223,0,-62.0683	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/0:243:243,0:243:8692:0:0:0,-73.1503,-782.257	0/0:246:246,0:246:8844:0:0:0,-74.0534,-795.94	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:218:218,0:218:7820:0:0:0,-65.6245,-703.827	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:80:45,35:45:1612:35:1256:-89.2629,0,-121.288	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:175:175,0:175:6263:0:0:0,-52.6802,-563.764	0/0:141:141,0:141:5044:0:0:0,-42.4452,-454.106	0/1:56:29,27:29:1036:27:964:-70.2191,0,-76.6962	0/1:15:8,7:8:284:7:248:-18.1487,0,-21.3879	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:175:175,0:175:6276:0:0:0,-52.6802,-564.932	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:77:43,34:43:1544:34:1216:-86.5648,0,-116.074	0/0:117:117,0:117:4188:0:0:0,-35.2205,-377.102	0/1:112:55,57:55:1976:57:2033:-149.525,0,-144.399	0/0:123:123,0:123:4400:0:0:0,-37.0267,-396.173	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.87	0/0:77:76,1:76:2720:1:36:0,-19.581,-241.445	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:106:57,49:57:2040:49:1741:-125.063,0,-151.963	0/1:55:25,29:25:896:29:1044:-77.6594,0,-64.345	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:78:42,36:42:1512:36:1296:-93.4636,0,-112.894	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:133:132,1:132:4720:1:36:0,-36.4387,-421.362	0/1:143:80,63:80:2868:63:2268:-161.335,0,-215.31	0/0:72:69,3:69:2468:3:108:0,-11.599,-212.299	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:136:76,60:76:2724:60:2156:-153.367,0,-204.463	0/0:175:175,0:175:6260:0:0:0,-52.6802,-563.495	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:39:20,19:20:720:19:680:-49.789,0,-53.3886	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:114:114,0:114:4072:0:0:0,-34.3174,-366.668	0/1:83:44,39:44:1576:39:1400:-101.314,0,-117.146	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/0:136:136,0:136:4880:0:0:0,-40.9401,-439.351	0/0:108:108,0:108:3848:0:0:0,-32.5112,-346.515	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.037	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:243:243,0:243:8704:0:0:0,-73.1503,-783.351	0/1:123:63,60:63:2268:60:2114:-153.499,0,-167.355	0/1:182:91,91:91:3257:91:3253:-238.202,0,-238.558	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/1:70:32,38:32:1152:38:1363:-101.899,0,-82.918	0/1:131:77,54:77:2768:54:1944:-135.801,0,-209.923	0/1:28:12,16:12:432:16:572:-43.3846,0,-30.7924	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:68:31,37:31:1112:37:1326:-99.1722,0,-79.9213	0/1:60:25,35:25:900:35:1237:-93.5705,0,-63.2592	0/0:122:121,0:121:4324:0:0:0,-36.4246,-388.977	0/0:136:136,0:136:4888:0:0:0,-40.9401,-440.07
chr02	4219270	.	C	T	88402	PASS	AB=0.460695;ABP=25.0307;AC=153;AF=0.81383;AN=188;AO=4055;CIGAR=1X;DP=4950;DPB=4950;DPRA=17.7312;EPP=8808.33;EPPR=1944.31;GTI=1;LEN=1;MEANALT=1.01075;MQM=58.834;MQMR=59.8971;NS=94;NUMALT=1;ODDS=2.12933;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145057;QR=31914;RO=894;RPL=4055;RPP=8808.33;RPPR=1944.31;RPR=0;RUN=1;SAF=0;SAP=8808.33;SAR=4055;SRF=0;SRP=1944.31;SRR=894;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:936:-84.4369,-7.82678,0	1/1:113:1,112:1:36:112:3998:-356.268,-30.4181,0	1/1:50:0,50:0:0:50:1781:-160.321,-15.0515,0	0/1:179:91,88:91:3238:88:3126:-227.457,0,-237.755	0/1:47:33,14:33:1184:14:504:-31.5497,0,-92.7199	0/1:36:21,15:21:752:15:540:-38.069,0,-57.1683	1/1:108:0,108:0:0:108:3857:-346.371,-32.5112,0	1/1:63:0,63:0:0:63:2253:-202.735,-18.9649,0	1/1:41:0,41:0:0:41:1472:-132.663,-12.3422,0	1/1:41:0,41:0:0:41:1457:-131.424,-12.3422,0	1/1:19:0,19:0:0:19:684:-61.8595,-5.71957,0	1/1:27:0,27:0:0:27:957:-86.2134,-8.12781,0	1/1:24:0,24:0:0:24:864:-78.0535,-7.22472,0	0/1:25:11,14:11:392:14:500:-37.8091,0,-28.0943	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	1/1:18:0,18:0:0:18:638:-57.7247,-5.41854,0	0/1:13:5,8:5:180:8:288:-22.3467,0,-12.6387	1/1:15:0,15:0:0:15:534:-48.3112,-4.51545,0	0/1:192:94,98:94:3346:98:3493:-256.722,0,-243.557	0/1:85:50,35:50:1796:35:1256:-87.4833,0,-134.971	1/1:111:0,111:0:0:111:3943:-354.845,-33.4143,0	1/1:56:1,55:1:36:55:1980:-174.874,-13.2594,0	0/1:72:31,41:31:1101:41:1476:-111.415,0,-77.7233	1/1:38:0,38:0:0:38:1344:-121.156,-11.4391,0	1/1:153:1,152:1:36:152:5453:-486.832,-42.4593,0	1/1:102:0,102:0:0:102:3668:-330.274,-30.7051,0	1/1:8:0,8:0:0:8:288:-26.2211,-2.40824,0	1/1:175:0,175:0:0:175:6277:-564.953,-52.6803,0	1/1:90:0,90:0:0:90:3228:-290.694,-27.0927,0	0/1:71:45,26:45:1574:26:936:-62.9571,0,-120.562	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:12:0,12:0:0:12:428:-38.8579,-3.61236,0	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/1:4:3,1:3:108:1:36:-2.39315,0,-8.87105	0/1:8:6,2:6:216:2:72:-4.42657,0,-17.3814	1/1:102:0,102:0:0:102:3647:-328.122,-30.7051,0	1/1:66:0,66:0:0:66:2372:-213.731,-19.868,0	0/1:21:11,10:11:396:10:360:-26.3964,0,-29.6602	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:109:0,109:0:0:109:3870:-347.979,-32.8123,0	1/1:15:0,15:0:0:15:540:-48.9319,-4.51545,0	1/1:92:0,92:0:0:92:3281:-295.285,-27.6948,0	1/1:20:0,20:0:0:20:720:-65.0969,-6.0206,0	0/1:19:9,10:9:324:10:360:-26.9961,0,-23.7863	1/1:53:0,53:0:0:53:1904:-171.57,-15.9546,0	0/1:51:27,23:27:964:23:828:-59.3928,0,-71.6648	1/1:92:1,91:1:36:91:3272:-290.174,-24.0965,0	1/1:38:0,38:0:0:38:1360:-122.665,-11.4391,0	1/1:77:0,77:0:0:77:2753:-247.555,-23.1793,0	1/1:116:1,115:1:36:115:4106:-365.894,-31.3212,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:86:0,86:0:0:86:3066:-275.796,-25.8886,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:7:0,7:0:0:7:237:-21.6535,-2.10721,0	0/1:75:46,29:46:1652:29:1044:-71.6976,0,-126.391	0/1:40:28,12:28:985:12:432:-27.1098,0,-76.917	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:25:0,25:0:0:25:885:-79.9576,-7.52575,0	0/1:48:23,25:23:820:25:896:-66.4791,0,-59.6731	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:127:0,127:0:0:127:4533:-408.024,-38.2308,0	0/1:100:53,47:53:1908:47:1673:-120.612,0,-141.895	1/1:35:2,33:2:72:33:1188:-100.355,-3.69933,0	1/1:73:0,73:0:0:73:2620:-236.034,-21.9752,0	0/1:107:52,55:52:1868:55:1949:-143.411,0,-136.119	1/1:56:0,56:0:0:56:2012:-180.653,-16.8577,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:59:0,59:0:0:59:2083:-187.575,-17.7608,0	0/1:40:19,21:19:669:21:756:-56.3251,0,-48.4927	1/1:8:0,8:0:0:8:287:-26.1376,-2.40824,0	1/1:72:0,72:0:0:72:2573:-231.478,-21.6742,0	0/1:12:6,6:6:216:6:216:-16.1726,0,-16.1782	1/1:62:0,62:0:0:62:2220:-199.969,-18.6639,0	1/1:122:0,122:0:0:122:4350:-391.503,-36.7257,0	1/1:15:0,15:0:0:15:540:-48.8537,-4.51545,0	1/1:38:0,38:0:0:38:1368:-123.117,-11.4391,0	1/1:11:0,11:0:0:11:396:-35.9034,-3.31133,0	1/1:84:0,84:0:0:84:3009:-271,-25.2865,0	0/1:38:16,22:16:576:22:777:-58.7602,0,-40.7358	0/1:122:70,52:70:2497:52:1872:-132.033,0,-188.256	1/1:73:0,73:0:0:73:2610:-235.028,-21.9752,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:27:13,14:13:468:14:504:-37.4249,0,-34.3318	0/1:55:28,27:28:996:27:972:-71.2275,0,-73.3982	0/1:23:13,10:13:464:10:360:-25.7946,0,-35.1656	1/1:41:0,41:0:0:41:1476:-133.025,-12.3422,0	1/1:36:0,36:0:0:36:1292:-116.549,-10.8371,0	1/1:11:0,11:0:0:11:396:-35.9375,-3.31133,0	0/1:43:26,17:26:932:17:612:-42.4691,0,-71.2546	0/1:26:19,7:19:672:7:252:-15.1446,0,-52.9801	1/1:90:0,90:0:0:90:3217:-289.58,-27.0927,0	1/1:46:0,46:0:0:46:1652:-148.888,-13.8474,0
chr02	4265218	.	A	G	8801.48	PASS	AB=0.191317;ABP=6751.55;AC=32;AF=0.170213;AN=188;AO=1614;CIGAR=1X;DP=15552;DPB=15552;DPRA=1.94401;EPP=3490.42;EPPR=6491.9;GTI=9;LEN=1;MEANALT=1.02326;MQM=40.5682;MQMR=59.6607;NS=94;NUMALT=1;ODDS=2.5017;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57474;QR=498369;RO=13935;RPL=0;RPP=3507.77;RPPR=29743.6;RPR=1614;RUN=1;SAF=1612;SAP=3490.42;SAR=2;SRF=10254;SRP=6735.48;SRR=3681;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:63:58,5:58:2088:5:180:0,-3.38193,-172.577	0/0:204:204,0:204:7317:0:0:0,-61.4101,-657.95	0/1:287:224,63:224:8033:63:2226:-98.3077,0,-636.506	0/0:175:175,0:175:6238:0:0:0,-52.6802,-561.013	0/1:129:87,42:87:3098:42:1512:-90.05,0,-240.179	0/1:104:75,29:75:2700:29:1006:-53.9819,0,-211.703	0/0:145:143,2:143:5132:2:72:0,-36.9942,-455.292	0/1:341:244,97:244:8731:97:3449:-187.603,0,-682.805	0/0:119:119,0:119:4280:0:0:0,-35.8226,-385.319	0/0:173:172,1:172:6164:1:36:0,-48.5755,-550.829	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.117	0/0:124:124,0:124:4460:0:0:0,-37.3277,-401.465	0/0:102:102,0:102:3672:0:0:0,-30.7051,-330.58	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.637	0/0:78:78,0:78:2720:0:0:0,-23.4803,-244.85	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.957	0/0:93:93,0:93:3318:0:0:0,-27.9958,-298.601	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.928	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.539	0/1:433:357,76:357:12770:76:2694:-104.533,0,-1018.67	0/1:157:97,60:97:3492:60:2152:-136.928,0,-267.089	0/1:150:117,33:117:4167:33:1188:-60.222,0,-330.052	0/0:134:134,0:134:4792:0:0:0,-40.338,-431.276	0/0:38:37,1:37:1328:1:36:0,-7.98465,-116.368	0/0:112:112,0:112:4005:0:0:0,-33.7154,-360.593	0/1:854:728,126:728:25887:126:4468:-136.012,0,-2070.4	0/0:177:177,0:177:6334:0:0:0,-53.2823,-569.933	0/0:49:48,1:48:1728:1:36:0,-11.296,-152.342	0/1:724:647,77:647:23009:77:2749:-24.9131,0,-1852.16	0/1:220:177,43:177:6357:43:1544:-66.7214,0,-505.039	0/0:118:118,0:118:4212:0:0:0,-35.5215,-378.098	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:3:1,2:1:36:2:72:-5.53335,0,-2.69518	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:695:595,100:595:21235:100:3580:-103.444,0,-1701.13	0/1:253:210,43:210:7507:43:1524:-54.8297,0,-599.248	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.802	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.1969	0/0:335:335,0:335:12014:0:0:0,-100.845,-1080.75	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.85	0/0:183:182,1:182:6533:1:36:0,-51.4953,-584.02	0/0:160:160,0:160:5737:0:0:0,-48.1648,-515.941	0/1:119:78,41:78:2792:41:1476:-92.4662,0,-215.612	0/1:315:277,38:277:9800:38:1360:-25.5622,0,-786.93	0/0:65:64,1:64:2288:1:36:0,-16.1793,-202.674	0/0:244:244,0:244:8721:0:0:0,-73.4513,-784.796	0/0:175:175,0:175:6276:0:0:0,-52.6802,-564.856	0/0:290:289,1:289:10345:1:36:0,-84.3959,-926.738	0/1:392:340,52:340:12131:52:1818:-40.7853,0,-972.692	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:167:167,0:167:6004:0:0:0,-50.272,-540.232	0/0:73:73,0:73:2601:0:0:0,-21.9752,-233.557	0/1:12:9,3:9:324:3:108:-5.87292,0,-25.8935	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.58	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.625	0/1:8:7,1:7:237:1:36:-1.12788,0,-19.2508	0/0:28:27,1:27:972:1:36:0,-4.89272,-84.2618	0/0:106:106,0:106:3786:0:0:0,-31.9092,-340.918	0/1:244:208,36:208:7468:36:1277:-36.9746,0,-598.693	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:270:270,0:270:9604:0:0:0,-81.2781,-863.433	0/1:217:141,76:141:5048:76:2732:-172.899,0,-388.599	0/0:65:64,1:64:2304:1:36:0,-16.1125,-203.53	0/1:300:250,50:250:8953:50:1747:-62.4384,0,-715.396	0/1:439:354,84:354:12724:84:2978:-127.638,0,-1012.79	0/0:406:367,39:367:13117:39:1396:0,-0.376899,-1058.46	0/1:46:32,14:32:1148:14:504:-29.6618,0,-89.7825	0/1:140:108,32:108:3880:32:1148:-54.6716,0,-307	0/1:200:150,50:150:5346:50:1791:-97.3535,0,-421.038	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.047	0/1:106:87,19:87:3128:19:684:-24.1905,0,-249.828	0/1:132:99,33:99:3560:33:1188:-61.1345,0,-280.529	0/1:285:216,69:216:7711:69:2469:-122.62,0,-607.607	0/0:336:336,0:336:12025:0:0:0,-101.146,-1081.92	0/1:270:227,43:227:8130:43:1495:-44.5871,0,-650.116	0/1:298:228,70:228:8136:70:2490:-120.29,0,-642.491	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:170:170,0:170:6120:0:0:0,-51.1751,-550.071	0/0:65:65,0:65:2310:0:0:0,-19.5669,-207.878	0/0:202:202,0:202:7229:0:0:0,-60.8081,-650.546	0/0:245:244,0:244:8718:0:0:0,-73.4513,-783.946	0/0:156:156,0:156:5576:0:0:0,-46.9607,-501.957	0/0:94:93,0:93:3336:0:0:0,-27.9958,-300.069	0/0:282:282,0:282:10082:0:0:0,-84.8905,-907.285	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2524	0/0:159:159,0:159:5682:0:0:0,-47.8638,-511.361	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.466	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.398	0/1:112:88,24:88:3133:24:864:-41.1866,0,-248.477	0/1:169:135,34:135:4852:34:1209:-53.764,0,-385.852	0/0:218:218,0:218:7789:0:0:0,-65.6245,-700.901	0/0:237:237,0:237:8496:0:0:0,-71.3441,-764.611
chr02	4265238	.	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chr02	4265371	.	C	T	20115.5	PASS	AB=0.356704;ABP=728.023;AC=43;AF=0.231183;AN=186;AO=1455;CIGAR=1X;DP=7153;DPB=7153;DPRA=1.66509;EPP=3162.5;EPPR=12339.2;GTI=1;LEN=1;MEANALT=1;MQM=47.6873;MQMR=59.9073;NS=93;NUMALT=1;ODDS=0.462143;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51895;QR=203753;RO=5697;RPL=0;RPP=3162.5;RPPR=12339.2;RPR=1455;RUN=1;SAF=1455;SAP=3162.5;SAR=0;SRF=5697;SRP=12373.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:17,12:17:608:12:428:-29.4769,0,-46.3222	0/0:98:97,1:97:3460:1:36:0,-25.9027,-308.014	0/1:94:59,35:59:2116:35:1248:-83.0158,0,-162.412	0/0:156:156,0:156:5572:0:0:0,-46.9607,-501.572	0/1:58:41,17:41:1467:17:608:-37.1181,0,-114.843	0/1:64:43,21:43:1539:21:752:-48.2664,0,-119.536	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/1:135:82,53:82:2903:53:1881:-127.573,0,-220.863	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:67:67,0:67:2364:0:0:0,-20.169,-213.017	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:51:31,20:31:1108:20:712:-48.5198,0,-84.6785	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/1:28:20,8:20:702:8:284:-17.2458,0,-55.0737	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7863	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:163:105,58:105:3726:58:2068:-135.152,0,-286.472	0/0:86:85,0:85:3035:0:0:0,-25.5875,-273.06	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.501	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.336	0/1:72:41,31:41:1449:31:1108:-77.3744,0,-109.03	0/1:372:211,161:211:7544:161:5715:-395.008,0,-566.528	0/0:85:85,0:85:3027:0:0:0,-25.5875,-272.639	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/1:275:170,105:170:6100:105:3734:-249.342,0,-466.313	0/1:158:107,51:107:3817:51:1820:-114.831,0,-296.164	0/0:149:148,1:148:5324:1:36:0,-41.305,-475.656	0/1:9:6,3:6:216:3:108:-7.25486,0,-17.0812	0/1:8:6,2:6:212:2:72:-4.33176,0,-16.8234	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:143:95,48:95:3412:48:1724:-110.259,0,-264.246	0/1:206:122,84:122:4368:84:3016:-206.994,0,-331.281	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/1:2:1,1:1:32:1:36:-2.93406,0,-2.59725	0/1:133:94,39:94:3367:39:1400:-85.1995,0,-263.208	0/1:25:13,12:13:468:12:432:-31.3325,0,-34.9339	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2686	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:129:104,25:104:3716:25:900:-41.7785,0,-295.38	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.264	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.581	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:118:118,0:118:4211:0:0:0,-35.5215,-379.171	0/1:178:118,60:118:4208:60:2133:-136.527,0,-325.317	0/1:5:3,2:3:108:2:72:-5.30264,0,-8.57002	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.703	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.573	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.356	0/1:6:3,3:3:108:3:108:-8.12966,0,-8.26899	0/1:14:10,4:10:356:4:144:-8.62489,0,-28.1586	0/1:98:75,23:75:2669:23:801:-42.3178,0,-210.953	0/1:116:83,33:83:2984:33:1188:-70.7625,0,-233.871	.:.:.:.:.:.:.:.	0/0:189:189,0:189:6759:0:0:0,-56.8947,-608.381	0/0:144:144,0:144:5147:0:0:0,-43.3483,-463.358	0/0:73:71,2:71:2540:2:72:0,-15.2138,-222.09	0/1:71:50,21:50:1796:21:752:-45.9752,0,-140.547	0/1:212:134,78:134:4804:78:2773:-182.39,0,-368.646	0/1:182:114,68:114:4073:68:2404:-159.626,0,-311.968	0/1:8:5,3:5:180:3:108:-7.53489,0,-14.1438	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:98:67,31:67:2412:31:1116:-69.9725,0,-187.817	0/1:27:16,11:16:576:11:396:-27.4931,0,-44.0472	0/1:115:75,40:75:2672:40:1432:-93.6881,0,-206.108	0/1:64:47,17:47:1680:17:612:-35.7672,0,-132.204	0/1:140:86,54:86:3076:54:1928:-130.099,0,-234.924	0/0:120:119,1:119:4249:1:36:0,-32.565,-379.03	0/1:89:53,36:53:1892:36:1273:-87.2646,0,-143.767	0/1:101:68,33:68:2440:33:1184:-75.7846,0,-189.223	0/1:6:3,3:3:108:3:108:-8.18089,0,-8.26899	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.242	0/0:132:132,0:132:4732:0:0:0,-39.736,-425.997	0/1:110:73,37:73:2620:37:1310:-83.2031,0,-202.933	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:100:60,40:60:2151:40:1436:-97.8004,0,-163.754	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:69:43,26:43:1540:26:923:-62.1214,0,-118.122	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:38:22,16:22:788:16:576:-40.1914,0,-59.8033	0/1:64:39,25:39:1396:25:892:-60.2247,0,-106.659	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:32:32,0:32:1102:0:0:0,-9.63296,-99.482
chr02	4265388	.	T	C	18761.2	PASS	AB=0.475113;ABP=14.8994;AC=34;AF=0.182796;AN=186;AO=1060;CIGAR=1X;DP=7042;DPB=7042;DPRA=1.10656;EPP=1820.83;EPPR=4338.34;GTI=2;LEN=1;MEANALT=1.02564;MQM=59.6472;MQMR=56.9983;NS=93;NUMALT=1;ODDS=0.473104;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37625;QR=213345;RO=5979;RPL=59;RPP=1820.83;RPPR=4338.34;RPR=1001;RUN=1;SAF=1060;SAP=2304.77;SAR=0;SRF=5979;SRP=12986.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1031:0:0:0,-8.72987,-92.4526	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.436	0/0:90:90,0:90:3215:0:0:0,-27.0927,-288.319	0/1:150:54,96:54:1936:96:3389:-259.885,0,-129.362	0/1:57:31,26:31:1116:26:922:-66.1326,0,-83.1202	0/1:65:43,22:43:1532:22:784:-51.317,0,-118.134	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:134:134,0:134:4779:0:0:0,-40.338,-428.943	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:50:50,0:50:1788:0:0:0,-15.0515,-160.664	0/0:34:34,0:34:1202:0:0:0,-10.235,-108.484	0/1:29:19,10:19:684:10:356:-23.6514,0,-53.1605	0/1:25:7,18:7:252:18:629:-49.408,0,-15.5032	0/1:25:19,6:19:660:6:212:-11.899,0,-51.9467	0/0:37:37,0:37:1307:0:0:0,-11.1381,-117.931	0/1:29:19,10:19:680:10:360:-24.0082,0,-52.7993	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:162:102,60:102:3652:60:2125:-142.751,0,-277.932	0/1:85:43,42:43:1544:42:1491:-108.896,0,-113.666	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:88:88,0:88:3136:0:0:0,-26.4906,-282.462	0/1:93:26,67:26:928:67:2362:-184.727,0,-55.8425	0/0:72:72,0:72:2563:0:0:0,-21.6742,-229.966	0/0:366:365,1:365:12995:1:36:0,-106.579,-1158.48	0/0:85:85,0:85:3001:0:0:0,-25.5875,-270.3	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:270:270,0:270:9660:0:0:0,-81.2781,-865.01	0/0:154:154,0:154:5492:0:0:0,-46.3586,-492.54	0/1:146:63,83:63:2247:83:2955:-222.148,0,-158.498	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.3975	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.9823	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:143:141,2:141:5021:2:72:0,-36.2106,-443.172	0/0:202:202,0:202:7195:0:0:0,-60.8081,-645.123	0/1:24:13,11:13:464:11:396:-28.758,0,-34.8728	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.93406	0/0:130:130,0:130:4623:0:0:0,-39.1339,-415.189	0/0:25:25,0:25:900:0:0:0,-7.52575,-80.9598	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:24:24,0:24:852:0:0:0,-7.22472,-76.9988	0/1:30:15,15:15:532:15:523:-38.3676,0,-39.1822	0/0:125:125,0:125:4455:0:0:0,-37.6287,-399.735	0/1:74:35,39:35:1252:39:1382:-102.383,0,-90.7089	0/0:111:111,0:111:3944:0:0:0,-33.4143,-355.153	0/0:68:68,0:68:2411:0:0:0,-20.47,-217.247	0/0:114:114,0:114:4043:0:0:0,-34.3174,-364.058	0/0:176:176,0:176:6299:0:0:0,-52.9813,-564.898	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.5416	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/0:62:60,2:60:2131:2:68:0,-12.2081,-185.602	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:62:27,35:27:960:35:1239:-92.6581,0,-68.0524	0/1:43:19,24:19:671:24:864:-65.1245,0,-47.7715	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.1105	0/1:14:9,5:9:324:5:180:-12.3293,0,-24.8242	0/0:96:96,0:96:3421:0:0:0,-28.8989,-307.495	0/1:116:76,40:76:2724:40:1428:-93.8975,0,-208.966	.:.:.:.:.:.:.:.	0/0:182:182,0:182:6486:0:0:0,-54.7875,-583.825	0/1:138:70,68:70:2495:68:2404:-175.06,0,-183.261	0/0:70:69,1:69:2472:1:36:0,-17.4738,-219.064	0/0:70:70,0:70:2512:0:0:0,-21.0721,-225.675	0/1:208:123,85:123:4404:85:3015:-208.936,0,-330.359	0/0:177:173,1:173:6130:1:36:0,-49.1374,-546.083	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.3499	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:101:67,34:67:2404:34:1216:-79.335,0,-184.889	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.1702	0/0:114:114,0:114:4084:0:0:0,-34.3174,-366.843	0/1:63:41,22:41:1468:22:768:-50.4755,0,-112.671	0/0:139:139,0:139:4964:0:0:0,-41.8432,-445.204	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.098	0/0:86:86,0:86:3067:0:0:0,-25.8886,-275.492	0/0:98:97,1:97:3464:1:36:0,-25.9027,-307.281	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.704	0/0:100:100,0:100:3578:0:0:0,-30.103,-322.226	0/1:70:27,43:27:960:43:1540:-117.81,0,-65.6442	0/1:130:56,74:56:1992:74:2619:-196.792,0,-140.42	0/0:106:106,0:106:3792:0:0:0,-31.9092,-339.131	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:101:64,37:64:2292:37:1323:-88.9673,0,-174.519	0/1:26:10,16:10:356:16:572:-43.9866,0,-24.5545	0/0:69:69,0:69:2480:0:0:0,-20.7711,-222.912	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:39:27,12:27:960:12:423:-26.6625,0,-74.469	0/1:60:33,27:33:1175:27:964:-69.0009,0,-86.9223	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.711	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549
chr02	4265392	.	A	G	20408.2	PASS	AB=0.359101;ABP=701.207;AC=43;AF=0.231183;AN=186;AO=1463;CIGAR=1X;DP=7134;DPB=7134;DPRA=1.70917;EPP=3179.87;EPPR=12302.2;GTI=1;LEN=1;MEANALT=1.04167;MQM=47.6418;MQMR=59.9121;NS=93;NUMALT=1;ODDS=0.746701;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52382;QR=202836;RO=5668;RPL=1463;RPP=3179.87;RPPR=12302.2;RPR=0;RUN=1;SAF=1463;SAP=3179.87;SAR=0;SRF=5668;SRP=12310.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:17,12:17:612:12:424:-29.1095,0,-46.6836	0/0:99:98,1:98:3516:1:36:0,-26.2037,-313.051	0/1:94:59,35:59:2108:35:1256:-83.7362,0,-161.692	0/0:157:157,0:157:5585:0:0:0,-47.2617,-501.546	0/1:59:42,17:42:1504:17:608:-36.8382,0,-117.871	0/1:65:43,22:43:1544:22:784:-50.8432,0,-119.686	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/1:136:82,54:82:2921:54:1929:-131.584,0,-222.184	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:66:66,0:66:2341:0:0:0,-19.868,-210.948	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:51:32,19:32:1152:19:665:-44.3418,0,-88.6376	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:26:19,7:19:680:7:252:-14.9878,0,-53.7024	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5071	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:160:104,56:104:3740:56:2008:-130.636,0,-288.634	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.383	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.306	0/0:92:92,0:92:3312:0:0:0,-27.6948,-298.163	0/1:74:42,32:42:1500:32:1139:-79.5396,0,-113.018	0/1:370:209,161:209:7458:161:5765:-399.021,0,-559.391	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.288	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:270:167,103:167:5976:103:3669:-244.742,0,-456.666	0/1:154:104,50:104:3728:50:1780:-112.323,0,-289.362	0/0:149:148,1:148:5297:1:36:0,-41.305,-473.229	0/1:8:5,3:5:180:3:108:-7.55589,0,-14.1438	0/1:8:6,2:6:201:2:72:-4.33176,0,-15.8157	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:143:94,49:94:3345:49:1755:-113.015,0,-258.219	0/1:204:118,86:118:4186:86:3084:-213.699,0,-315.511	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:2:1,1:1:36:1:36:-2.93406,0,-2.99621	0/1:131:92,39:92:3300:39:1400:-85.7805,0,-257.784	0/1:25:13,12:13:464:12:428:-30.9835,0,-34.5718	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8426	0/0:30:30,0:30:1057:0:0:0,-9.0309,-95.439	0/1:130:104,26:104:3736:26:932:-44.3105,0,-296.605	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.044	0/0:115:111,4:111:3977:4:144:0,-21.3048,-344.803	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:117:117,0:117:4192:0:0:0,-35.2205,-377.461	0/1:174:116,58:116:4160:58:2084:-133.281,0,-322.201	0/1:5:3,2:3:108:2:72:-5.30264,0,-8.57002	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.822	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.7	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.315	0/1:7:4,3:4:144:3:108:-7.82863,0,-11.2064	0/1:14:11,3:11:392:3:108:-5.38459,0,-31.3941	0/1:97:74,23:74:2652:23:801:-42.563,0,-209.726	0/1:114:81,33:81:2908:33:1188:-71.3646,0,-227.637	.:.:.:.:.:.:.:.	0/0:190:190,0:190:6786:0:0:0,-57.1957,-610.808	0/0:147:147,0:147:5272:0:0:0,-44.2514,-474.601	0/0:73:71,2:71:2532:2:72:0,-15.2138,-221.37	0/1:71:50,21:50:1781:21:756:-46.3279,0,-139.193	0/1:214:134,80:134:4792:80:2872:-190.422,0,-366.933	0/1:181:112,68:112:4012:68:2436:-162.68,0,-306.724	0/1:8:5,3:5:180:3:108:-7.53489,0,-14.1438	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:102:67,33:67:2408:33:1188:-75.4137,0,-186.495	0/1:27:16,11:16:576:11:396:-27.4931,0,-44.0472	0/1:113:75,38:75:2684:38:1368:-88.4996,0,-207.789	0/1:63:47,16:47:1688:16:576:-32.431,0,-133.224	0/1:142:87,55:87:3112:55:1976:-133.639,0,-237.561	0/0:122:121,1:121:4325:1:36:0,-33.167,-385.866	0/1:89:52,37:52:1864:37:1324:-91.8168,0,-141.248	0/1:101:68,33:68:2428:33:1188:-76.1121,0,-188.372	0/1:6:3,3:3:108:3:108:-8.18089,0,-8.26899	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/0:132:132,0:132:4736:0:0:0,-39.736,-426.356	0/1:108:70,38:70:2516:38:1359:-87.5186,0,-194.18	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:101:60,41:60:2135:41:1468:-100.373,0,-162.014	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:70:43,27:43:1540:27:972:-66.155,0,-117.821	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/1:40:23,17:23:828:17:608:-42.48,0,-62.8006	0/1:63:38,25:38:1364:25:900:-61.1754,0,-104.082	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63
chr02	4265586	.	CACTG	GACTG,GACTC	133648	PASS	AB=0.479915,0.514271;ABP=9.63949,6.35703;AC=153,35;AF=0.81383,0.18617;AN=188;AO=5047,992;CIGAR=1X4M,1X3M1X;DP=6081;DPB=6081;DPRA=0,0.976543;EPP=10893.1,2139.77;EPPR=9.52472;GTI=3;LEN=1,5;MEANALT=1.79787,2.30769;MQM=59.9469,59.5323;MQMR=60;NS=94;NUMALT=2;ODDS=3.62767;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=180450,35013;QR=108;RO=3;RPL=5040,990;RPP=10901.7,2139.77;RPPR=9.52472;RPR=7,2;RUN=1,1;SAF=1,0;SAP=10953.7,2157.11;SAR=5046,992;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52,0:0:0:52,0:1864,0:-168.039,-15.6536,0,-168.039,-15.6536,-168.039	1/1:51:0,51,0:0:0:51,0:1812,0:-163.36,-15.3525,0,-163.36,-15.3525,-163.36	1/1:129:0,128,0:0:0:128,0:4543,0:-408.675,-38.5318,0,-408.675,-38.5318,-408.675	1/2:159:0,53,106:0:0:53,106:1896,3698:-455.688,-301.081,-285.126,-154.962,0,-123.052	1/2:57:0,25,32:0:0:25,32:881,1142:-165.178,-93.4517,-85.9259,-72.0801,0,-62.4472	1/2:42:0,25,17:0:0:25,17:888,605:-122.022,-49.6638,-42.1381,-72.7133,0,-67.5958	1/1:72:0,72,0:0:0:72,0:2573,0:-231.818,-21.6742,0,-231.818,-21.6742,-231.818	1/1:87:0,84,0:0:0:84,0:2996,0:-269.53,-25.2865,0,-269.53,-25.2865,-269.53	1/1:49:0,48,0:0:0:48,0:1701,0:-153.112,-14.4494,0,-153.112,-14.4494,-153.112	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/1:18:0,18,0:0:0:18,0:633,0:-57.2951,-5.41854,0,-57.2951,-5.41854,-57.2951	1/1:61:0,59,1:0:0:59,1:2118,36:-190.549,-17.7608,0,-187.62,-14.8114,-187.319	1/1:37:0,37,0:0:0:37,0:1323,0:-119.371,-11.1381,0,-119.371,-11.1381,-119.371	1/2:22:0,7,15:0:0:7,15:252,535:-64.5318,-43.9688,-41.8616,-20.9217,0,-16.4063	1/2:30:0,16,14:0:0:16,14:572,498:-87.5788,-40.9382,-36.1217,-46.9969,0,-42.7825	1/2:41:0,22,18:0:0:22,18:792,647:-117.402,-52.7833,-46.1606,-64.6186,0,-59.2	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:12:0,6,6:0:0:6,6:216,210:-35.0652,-17.4357,-15.6296,-17.9843,0,-16.1782	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:153:0,92,61:0:0:92,61:3304,2157:-445.554,-176.026,-148.332,-269.883,0,-251.52	1/2:136:0,59,76:0:0:59,76:2116,2640:-387.162,-214.568,-196.807,-172.588,0,-149.71	1/1:69:0,68,0:0:0:68,0:2420,0:-217.467,-20.47,0,-217.467,-20.47,-217.467	1/1:143:0,141,2:0:0:141,2:5045,71:-453.838,-42.4452,0,-448.053,-36.3052,-447.451	1/2:60:0,25,35:0:0:25,35:896,1241:-174.532,-101.459,-93.9331,-73.43,0,-62.8939	1/1:57:0,56,0:0:0:56,0:1991,0:-179.21,-16.8577,0,-179.21,-16.8577,-179.21	1/1:229:1,224,0:1:36:224,0:8014,0:-717.626,-64.4933,0,-717.927,-67.4307,-720.864	1/1:143:0,143,0:0:0:143,0:5105,0:-459.543,-43.0473,0,-459.543,-43.0473,-459.543	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:278:1,276,1:1:36:276,1:9846,36:-882.483,-80.1469,0,-879.847,-80.1469,-882.483	1/1:87:0,85,0:0:0:85,0:3025,0:-272.12,-25.5876,0,-272.12,-25.5876,-272.12	1/2:87:0,52,35:0:0:52,35:1864,1247:-254.024,-101.995,-86.3411,-152.386,0,-141.85	1/1:18:0,18,0:0:0:18,0:630,0:-57.0246,-5.41854,0,-57.0246,-5.41854,-57.0246	1/1:37:0,37,0:0:0:37,0:1328,0:-119.821,-11.1381,0,-119.821,-11.1381,-119.821	1/1:5:0,4,0:0:0:4,0:144,0:-12.9538,-1.20412,0,-12.9538,-1.20412,-12.9538	1/2:9:0,8,1:0:0:8,1:288,36:-26.7883,-3.2882,-0.879958,-23.8592,0,-23.5581	2/2:13:0,1,12:0:0:1,12:36,422:-37.9563,-35.0183,-34.7173,-3.61236,-0.315115,0	1/1:108:0,107,0:0:0:107,0:3836,0:-344.806,-32.2102,0,-344.806,-32.2102,-344.806	1/1:97:0,96,0:0:0:96,0:3440,0:-309.448,-28.8989,0,-309.448,-28.8989,-309.448	1/2:26:0,14,12:0:0:14,12:495,430:-75.7159,-35.4031,-31.1887,-40.6686,0,-37.0563	1/2:5:0,2,3:0:0:2,3:72,101:-14.4046,-8.52044,-7.91838,-6.23466,0,-5.33157	1/1:82:1,80,0:1:36:80,0:2861,0:-254.154,-21.1199,0,-254.455,-24.0824,-257.392	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/1:90:0,90,0:0:0:90,0:3216,0:-289.663,-27.0927,0,-289.663,-27.0927,-289.663	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/2:20:0,5,15:0:0:5,15:180,519:-57.2114,-42.5208,-41.0157,-15.0469,0,-10.5315	1/1:132:0,132,0:0:0:132,0:4717,0:-424.66,-39.736,0,-424.66,-39.736,-424.66	1/2:55:0,16,39:0:0:16,39:576,1371:-158.888,-111.895,-107.078,-47.3503,0,-35.6101	1/1:98:0,98,0:0:0:98,0:3492,0:-314.49,-29.5009,0,-314.49,-29.5009,-314.49	1/1:49:0,49,0:0:0:49,0:1747,0:-157.514,-14.7505,0,-157.514,-14.7505,-157.514	1/1:33:0,33,0:0:0:33,0:1174,0:-105.967,-9.93399,0,-105.967,-9.93399,-105.967	1/1:143:0,143,0:0:0:143,0:5121,0:-461.029,-43.0473,0,-461.029,-43.0473,-461.029	1/2:12:0,4,8:0:0:4,8:144,274:-34.3378,-22.5823,-21.3782,-12.1095,0,-9.70126	1/1:63:0,63,0:0:0:63,0:2255,0:-203.212,-18.9649,0,-203.212,-18.9649,-203.212	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:72:0,36,35:0:0:36,35:1288,1233:-205.268,-100.237,-89.3996,-105.027,0,-94.4907	1/2:35:0,20,14:0:0:20,14:712,503:-99.1059,-41.0756,-35.055,-58.0742,0,-53.8598	1/2:15:0,13,2:0:0:13,2:460,72:-43.697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chr02	4405092	.	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chr02	5264399	.	A	T	145997	PASS	AB=0.504117;ABP=3.33215;AC=158;AF=0.840426;AN=188;AO=6551;CIGAR=1X;DP=7649;DPB=7649;DPRA=0;EPP=13694.9;EPPR=2303.24;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.6179;MQMR=59.7644;NS=94;NUMALT=1;ODDS=1.31473;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232775;QR=39097;RO=1095;RPL=6489;RPP=13694.9;RPPR=2303.24;RPR=62;RUN=1;SAF=0;SAP=14228.3;SAR=6551;SRF=0;SRP=2380.77;SRR=1095;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1400:-125.108,-11.7402,0	1/1:79:0,79:0:0:79:2813:-253.405,-23.7814,0	1/1:125:0,125:0:0:125:4476:-402.988,-37.6288,0	1/1:185:0,184:0:0:184:6563:-589.761,-55.3895,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.5584	0/1:41:14,27:14:496:27:972:-75.2653,0,-32.632	1/1:112:0,112:0:0:112:4012:-360.484,-33.7154,0	1/1:155:0,155:0:0:155:5548:-499.444,-46.6597,0	1/1:90:0,90:0:0:90:3188:-286.87,-27.0927,0	1/1:127:0,127:0:0:127:4505:-404.973,-38.2308,0	1/1:56:0,56:0:0:56:1980:-178.341,-16.8577,0	1/1:54:0,54:0:0:54:1922:-173.233,-16.2556,0	1/1:53:0,53:0:0:53:1890:-170.366,-15.9546,0	0/1:69:32,37:32:1144:37:1313:-97.6991,0,-82.4903	0/1:48:21,27:21:756:27:953:-70.8988,0,-53.8479	0/1:48:24,24:24:855:24:838:-61.1507,0,-62.8207	1/1:34:0,34:0:0:34:1208:-108.99,-10.235,0	0/1:22:12,10:12:423:10:360:-26.1216,0,-31.4626	1/1:18:0,18:0:0:18:629:-56.8771,-5.41854,0	0/1:261:121,140:121:4348:140:4902:-362.303,0,-312.212	0/1:156:74,82:74:2647:82:2921:-216.154,0,-190.732	1/1:56:0,56:0:0:56:2004:-180.633,-16.8577,0	1/1:69:0,69:0:0:69:2392:-215.457,-20.7711,0	0/1:52:21,31:21:739:31:1104:-84.0171,0,-51.1788	1/1:62:0,62:0:0:62:2179:-196.055,-18.6639,0	1/1:264:1,263:1:32:263:9366:-839.608,-76.2726,0	1/1:249:0,249:0:0:249:8835:-795.129,-74.9565,0	1/1:24:0,24:0:0:24:839:-75.8216,-7.22472,0	1/1:267:0,267:0:0:267:9526:-857.297,-80.375,0	1/1:155:0,155:0:0:155:5545:-499.039,-46.6597,0	0/1:66:34,32:34:1216:32:1118:-81.0487,0,-89.8786	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:25:0,25:0:0:25:885:-79.7759,-7.52575,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	1/1:124:0,124:0:0:124:4420:-397.468,-37.3277,0	1/1:90:0,90:0:0:90:3212:-289.169,-27.0927,0	0/1:40:17,23:17:612:23:828:-62.802,0,-43.3722	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	1/1:151:0,151:0:0:151:5376:-483.257,-45.4555,0	1/1:26:0,26:0:0:26:914:-82.5744,-7.82678,0	1/1:105:0,105:0:0:105:3723:-335.266,-31.6082,0	1/1:39:0,39:0:0:39:1385:-124.948,-11.7402,0	0/1:44:18,26:18:644:26:888:-66.8959,0,-45.0453	1/1:67:0,67:0:0:67:2360:-212.657,-20.169,0	0/1:76:44,32:44:1572:32:1118:-78.0473,0,-118.893	1/1:134:0,134:0:0:134:4760:-428.559,-40.338,0	1/1:81:0,81:0:0:81:2882:-259.53,-24.3834,0	1/1:105:0,105:0:0:105:3759:-338.507,-31.6082,0	1/1:110:0,110:0:0:110:3939:-354.699,-33.1133,0	0/1:24:13,11:13:468:11:366:-26.0338,0,-35.2349	1/1:92:2,90:2:72:90:3191:-280.347,-20.858,0	1/1:88:1,87:1:36:87:3097:-275.359,-22.8924,0	1/1:7:0,7:0:0:7:237:-21.6593,-2.10721,0	0/1:161:81,80:81:2896:80:2841:-206.958,0,-212.406	1/1:23:0,23:0:0:23:810:-73.2185,-6.92369,0	0/1:17:12,5:12:413:5:176:-11.0671,0,-32.3803	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	1/1:96:0,96:0:0:96:3419:-307.923,-28.8989,0	0/1:81:44,37:44:1580:37:1332:-95.754,0,-118.103	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:163:0,163:0:0:163:5780:-520.279,-49.0679,0	0/1:172:79,93:79:2814:93:3282:-243.764,0,-201.232	1/1:106:5,101:5:180:101:3608:-308.371,-15.3571,0	1/1:75:0,75:0:0:75:2641:-236.588,-22.5773,0	0/1:132:63,69:63:2229:69:2434:-179.551,0,-161.051	1/1:161:1,160:1:36:160:5679:-507.493,-44.8676,0	1/1:37:0,37:0:0:37:1300:-117.242,-11.1381,0	1/1:63:1,62:1:36:62:2220:-196.466,-15.3666,0	0/1:29:15,14:15:536:14:496:-36.2444,0,-39.8449	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:72:0,71:0:0:71:2501:-224.704,-21.3731,0	0/1:83:42,41:42:1512:41:1458:-106.158,0,-111.352	1/1:173:0,173:0:0:173:6157:-553.339,-52.0782,0	1/1:111:0,111:0:0:111:3953:-353.409,-33.4143,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:151:0,151:0:0:151:5391:-485.312,-45.4555,0	1/1:20:0,20:0:0:20:692:-62.5917,-6.0206,0	1/1:98:0,98:0:0:98:3485:-313.563,-29.5009,0	0/1:105:59,46:59:2112:46:1652:-117.352,0,-158.741	0/1:229:120,109:120:4267:109:3861:-277.304,0,-315.272	1/1:46:0,46:0:0:46:1648:-147.895,-13.8474,0	1/1:55:0,55:0:0:55:1962:-176.852,-16.5567,0	0/1:36:17,19:17:603:19:680:-50.6921,0,-43.7624	1/1:76:0,76:0:0:76:2677:-240.822,-22.8783,0	0/1:19:9,10:9:324:10:352:-26.2986,0,-23.7863	1/1:53:0,53:0:0:53:1896:-170.902,-15.9546,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:42:0,42:0:0:42:1476:-133.132,-12.6433,0	0/1:55:29,26:29:1031:26:936:-68.0028,0,-76.546	0/1:60:41,19:41:1464:19:665:-42.111,0,-113.908	1/1:112:0,112:0:0:112:3958:-355.158,-33.7154,0	1/1:77:0,76:0:0:76:2709:-243.605,-22.8783,0
chr02	5513448	.	C	T	10508.8	PASS	AB=0.503586;ABP=3.15045;AC=28;AF=0.148936;AN=188;AO=635;CIGAR=1X;DP=4885;DPB=4885;DPRA=0.872242;EPP=1381.9;EPPR=9229.6;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9433;MQMR=59.9934;NS=94;NUMALT=1;ODDS=2.79195;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22788;QR=151830;RO=4249;RPL=635;RPP=1381.9;RPPR=9229.6;RPR=0;RUN=1;SAF=0;SAP=1381.9;SAR=635;SRF=0;SRP=9229.6;SRR=4249;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.242	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.751	0/1:25:10,15:10:356:15:536:-41.0491,0,-24.8555	0/1:44:18,26:18:648:26:928:-70.5929,0,-45.4066	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:63:62,1:62:2220:1:36:0,-15.3666,-196.466	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.035	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.986	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:39:29,10:29:1036:10:356:-20.6411,0,-81.8137	0/1:46:26,20:26:928:20:720:-51.2814,0,-69.9909	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:37:21,16:21:756:16:573:-40.7658,0,-57.2291	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:69:27,42:27:968:42:1504:-114.882,0,-66.6663	0/1:74:31,43:31:1108:43:1540:-116.617,0,-77.7548	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:74:40,34:40:1421:34:1209:-86.8379,0,-105.909	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:193:193,0:193:6893:0:0:0,-58.0988,-620.438	0/0:113:113,0:113:4064:0:0:0,-34.0164,-365.945	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.964	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:89:42,47:42:1508:47:1692:-125.775,0,-109.223	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978	0/0:141:141,0:141:5051:0:0:0,-42.4452,-454.734	0/0:126:126,0:126:4493:0:0:0,-37.9298,-404.539	0/1:21:9,12:9:309:12:432:-32.8996,0,-21.8191	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:91:90,1:90:3205:1:30:0,-24.3942,-285.673	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.539	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:43:20,23:20:716:23:828:-61.8998,0,-51.8234	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:30:9,21:9:324:21:748:-58.6144,0,-20.475	0/0:131:131,0:131:4655:0:0:0,-39.4349,-419.11	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.814	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:42:10,32:10:360:32:1152:-91.3469,0,-20.101	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:109:51,58:51:1832:58:2088:-155.378,0,-132.349	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/1:101:61,40:61:2188:40:1440:-99.4937,0,-166.782	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/1:61:36,25:36:1292:25:900:-62.9582,0,-98.2209	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.78	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:69:41,28:41:1476:28:1008:-70.2653,0,-112.365	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/1:54:26,28:26:920:28:1008:-74.7807,0,-66.8614	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.747	0/0:58:58,0:58:2058:0:0:0,-17.4597,-185.488	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.6947	0/0:58:57,1:57:2021:1:36:0,-13.8615,-178.457	0/1:24:12,11:12:428:11:390:-28.1554,0,-31.5755	0/0:101:101,0:101:3597:0:0:0,-30.404,-323.936	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:38:26,12:26:928:12:430:-27.601,0,-72.3991	0/0:82:82,0:82:2923:0:0:0,-24.6845,-263.305	0/1:40:20,20:20:711:20:720:-52.3842,0,-52.2744	0/0:54:54,0:54:1922:0:0:0,-16.2556,-173.256	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.536	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:43:20,23:20:712:23:828:-61.8998,0,-51.4624	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229
chr02	5532195	.	T	C	15962.9	PASS	AB=0.50682;ABP=3.95812;AC=29;AF=0.154255;AN=188;AO=1195;CIGAR=1X;DP=7934;DPB=7934;DPRA=0.979547;EPP=2597.92;EPPR=14636.6;GTI=0;LEN=1;MEANALT=1;MQM=34.713;MQMR=35.1603;NS=94;NUMALT=1;ODDS=2.96584;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42774;QR=241480;RO=6739;RPL=0;RPP=2597.92;RPPR=14636.6;RPR=1195;RUN=1;SAF=1195;SAP=2597.92;SAR=0;SRF=6739;SRP=14636.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:536:0:0:0,-4.51545,-42.166	0/0:143:143,0:143:5113:0:0:0,-43.0473,-392.904	0/0:65:65,0:65:2336:0:0:0,-19.5669,-181.186	0/0:139:139,0:139:4965:0:0:0,-41.8432,-407.976	0/1:38:19,19:19:684:19:684:-42.2039,0,-43.147	0/1:36:17,19:17:612:19:680:-41.832,0,-36.3906	0/0:64:64,0:64:2300:0:0:0,-19.2659,-189.742	0/0:115:114,1:114:4058:1:36:0,-31.5639,-305.982	0/0:96:96,0:96:3437:0:0:0,-28.8989,-265.809	0/0:123:123,0:123:4401:0:0:0,-37.0267,-362.328	0/0:33:33,0:33:1188:0:0:0,-9.93399,-97.1236	0/0:52:52,0:52:1868:0:0:0,-15.6536,-143.883	0/0:65:65,0:65:2336:0:0:0,-19.5669,-179.532	0/1:54:19,35:19:680:35:1260:-81.9718,0,-37.9086	0/1:66:28,38:28:1004:38:1348:-90.3529,0,-63.2758	0/1:47:21,26:21:752:26:923:-59.9404,0,-46.2458	0/0:65:65,0:65:2323:0:0:0,-19.5669,-176.7	0/1:56:30,26:30:1076:26:931:-53.1535,0,-65.1531	0/0:29:28,1:28:1008:1:36:0,-5.67533,-74.3501	0/1:164:89,75:89:3204:75:2696:-172.254,0,-213.134	0/1:191:99,92:99:3544:92:3303:-201.968,0,-221.675	0/0:88:88,0:88:3160:0:0:0,-26.4906,-266.73	0/0:84:84,0:84:3012:0:0:0,-25.2865,-247.515	0/1:93:22,71:22:788:71:2544:-173.897,0,-34.8204	0/0:36:36,0:36:1292:0:0:0,-10.8371,-103.389	0/0:360:360,0:360:12896:0:0:0,-108.371,-1085.86	0/0:188:188,0:188:6718:0:0:0,-56.5936,-533.36	0/0:43:43,0:43:1540:0:0:0,-12.9443,-122.278	0/0:186:186,0:186:6661:0:0:0,-55.9916,-558.97	0/0:158:157,1:157:5636:1:36:0,-45.6712,-441.848	0/1:153:60,93:60:2152:93:3330:-228.434,0,-128.683	0/0:8:8,0:8:273:0:0:0,-2.40824,-22.6519	0/0:9:9,0:9:324:0:0:0,-2.70927,-26.0173	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.05454	0/1:4:1,3:1:36:3:108:-7.34859,0,-1.85042	0/0:6:6,0:6:216:0:0:0,-1.80618,-16.9853	0/0:192:192,0:192:6896:0:0:0,-57.7978,-575.194	0/0:132:132,0:132:4721:0:0:0,-39.736,-369.152	0/1:55:33,22:33:1180:22:788:-44.6424,0,-73.3479	0/1:5:3,2:3:108:2:72:-4.55134,0,-7.4202	0/0:72:72,0:72:2584:0:0:0,-21.6742,-205.521	0/0:22:22,0:22:788:0:0:0,-6.62266,-61.6809	0/0:82:82,0:82:2944:0:0:0,-24.6845,-233.984	0/0:93:93,0:93:3331:0:0:0,-27.9958,-274.583	0/1:97:65,32:65:2321:32:1144:-64.1399,0,-162.793	0/0:59:59,0:59:2116:0:0:0,-17.7608,-178.637	0/1:112:48,64:48:1720:64:2296:-142.036,0,-99.9602	0/0:184:184,0:184:6600:0:0:0,-55.3895,-540.91	0/0:96:95,1:95:3408:1:36:0,-25.5999,-275.889	0/0:110:110,0:110:3940:0:0:0,-33.1133,-321.975	0/0:83:83,0:83:2976:0:0:0,-24.9855,-251.372	0/1:10:2,8:2:72:8:288:-21.0726,0,-3.25785	0/0:82:82,0:82:2936:0:0:0,-24.6845,-225.545	0/0:33:33,0:33:1184:0:0:0,-9.93399,-99.215	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.55271	0/1:118:53,65:53:1908:65:2324:-149.806,0,-114.869	0/0:24:24,0:24:864:0:0:0,-7.22472,-72.0116	0/1:3:1,2:1:36:2:72:-5.53335,0,-2.22055	0/1:29:19,10:19:684:10:360:-22.0167,0,-47.9709	0/0:72:72,0:72:2573:0:0:0,-21.6742,-203.192	0/1:109:52,57:52:1868:57:2036:-134.366,0,-121.734	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.29902	0/0:272:272,0:272:9726:0:0:0,-81.8802,-816.584	0/1:178:121,57:121:4328:57:2044:-114.795,0,-303.629	0/0:88:86,2:86:3084:2:72:0,-20.4342,-236.837	0/0:56:56,0:56:2012:0:0:0,-16.8577,-165.139	0/1:185:79,106:79:2815:106:3797:-256.195,0,-175.866	0/0:112:112,0:112:4024:0:0:0,-33.7154,-327.943	0/0:19:19,0:19:680:0:0:0,-5.71957,-53.4705	0/0:69:69,0:69:2480:0:0:0,-20.7711,-190.964	0/1:109:55,54:55:1980:54:1932:-130.81,0,-132.949	0/0:14:14,0:14:500:0:0:0,-4.21442,-41.454	0/0:41:41,0:41:1461:0:0:0,-12.3422,-111.498	0/1:63:40,23:40:1425:23:816:-43.7146,0,-91.7197	0/0:114:114,0:114:4085:0:0:0,-34.3174,-322.264	0/0:147:147,0:147:5268:0:0:0,-44.2514,-431.473	0/0:53:53,0:53:1904:0:0:0,-15.9546,-146.731	0/0:134:134,0:134:4800:0:0:0,-40.338,-369.908	0/0:18:18,0:18:648:0:0:0,-5.41854,-47.7769	0/0:114:114,0:114:4100:0:0:0,-34.3174,-321.939	0/1:85:55,30:55:1959:30:1072:-57.2841,0,-126.367	0/0:101:101,0:101:3616:0:0:0,-30.404,-296.852	0/0:101:101,0:101:3628:0:0:0,-30.404,-297.631	0/0:69:69,0:69:2468:0:0:0,-20.7711,-204.046	0/1:97:47,50:47:1688:50:1796:-119.165,0,-110.297	0/0:146:146,0:146:5226:0:0:0,-43.9504,-426.848	0/1:43:22,21:22:788:21:752:-45.1552,0,-48.5001	0/0:80:80,0:80:2864:0:0:0,-24.0824,-215.893	0/0:64:64,0:64:2295:0:0:0,-19.2659,-176.435	0/0:32:32,0:32:1152:0:0:0,-9.63296,-90.0001	0/1:75:29,46:29:1044:46:1643:-107.786,0,-60.1504	0/1:71:28,43:28:1004:43:1519:-103.818,0,-60.0572	0/0:130:130,0:130:4657:0:0:0,-39.1339,-381.15	0/0:103:103,0:103:3704:0:0:0,-31.0061,-303.718
chr02	5532207	.	A	G	131601	PASS	AB=0.489371;ABP=5.31841;AC=159;AF=0.845745;AN=188;AO=6748;CIGAR=1X;DP=7959;DPB=7959;DPRA=0;EPP=13624;EPPR=2484.68;GTI=0;LEN=1;MEANALT=1.05319;MQM=35.1849;MQMR=34.7181;NS=94;NUMALT=1;ODDS=5.19773;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241603;QR=43299;RO=1206;RPL=121;RPP=13624;RPPR=2484.68;RPR=6627;RUN=1;SAF=6748;SAP=14656.1;SAR=0;SRF=1206;SRP=2621.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:504:-39.2859,-4.21442,0	1/1:143:0,143:0:0:143:5125:-392.826,-43.0473,0	1/1:65:0,65:0:0:65:2298:-178.849,-19.567,0	1/1:141:0,141:0:0:141:5052:-414.885,-42.4452,0	0/1:38:19,19:19:684:19:684:-43.147,0,-42.2039	0/1:36:19,17:19:684:17:612:-36.3906,0,-42.1932	1/1:65:0,65:0:0:65:2317:-191.177,-19.567,0	1/1:115:1,114:1:36:114:4070:-306.806,-31.5639,0	1/1:95:0,95:0:0:95:3392:-263.269,-28.5979,0	1/1:123:0,123:0:0:123:4408:-362.878,-37.0267,0	1/1:33:0,33:0:0:33:1184:-96.9029,-9.93399,0	1/1:52:0,52:0:0:52:1860:-143.344,-15.6536,0	1/1:64:0,64:0:0:64:2304:-176.923,-19.2659,0	0/1:53:35,18:35:1252:18:644:-35.4611,0,-81.9502	0/1:65:38,27:38:1368:27:964:-60.4269,0,-91.4449	0/1:47:26,21:26:936:21:756:-46.4268,0,-60.5929	1/1:64:0,64:0:0:64:2300:-174.901,-19.2659,0	0/1:56:26,30:26:936:30:1076:-65.1531,0,-53.1742	1/1:29:1,28:1:36:28:1008:-74.3501,-5.67533,0	0/1:165:75,90:75:2696:90:3225:-213.724,0,-171.953	0/1:190:94,96:94:3380:96:3433:-212.883,0,-208.742	1/1:91:0,91:0:0:91:3276:-276.579,-27.3937,0	1/1:84:0,84:0:0:84:2979:-244.858,-25.2865,0	0/1:92:70,22:70:2520:22:777:-34.2592,0,-171.83	1/1:36:0,36:0:0:36:1296:-103.749,-10.8371,0	1/1:361:0,361:0:0:361:12898:-1087.6,-108.672,0	1/1:191:1,190:1:36:190:6805:-535.879,-53.9299,0	1/1:45:0,45:0:0:45:1616:-128.156,-13.5464,0	1/1:187:0,186:0:0:186:6650:-557.618,-55.9916,0	1/1:161:1,160:1:36:160:5718:-448.719,-46.5743,0	0/1:155:95,60:95:3416:60:2115:-126.482,0,-234.268	1/1:7:0,7:0:0:7:252:-20.7762,-2.10721,0	1/1:10:0,10:0:0:10:360:-28.7652,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.05454,-0.30103,0	0/1:4:3,1:3:108:1:36:-1.85042,0,-7.34859	1/1:6:0,6:0:0:6:216:-16.9853,-1.80618,0	1/1:193:0,193:0:0:193:6911:-577.763,-58.0988,0	1/1:132:0,132:0:0:132:4712:-370.037,-39.736,0	0/1:55:23,32:23:828:32:1139:-70.6074,0,-47.532	0/1:6:3,3:3:108:3:108:-7.11917,0,-6.27099	1/1:69:0,69:0:0:69:2476:-196.525,-20.7711,0	1/1:22:0,22:0:0:22:792:-61.6986,-6.62266,0	1/1:84:0,84:0:0:84:3008:-239.771,-25.2865,0	1/1:93:0,93:0:0:93:3340:-275.169,-27.9958,0	0/1:99:32,67:32:1148:67:2404:-169.087,0,-63.5598	1/1:60:0,60:0:0:60:2160:-182.083,-18.0618,0	0/1:113:65,47:65:2321:47:1692:-97.353,0,-143.736	1/1:184:0,184:0:0:184:6585:-539.777,-55.3895,0	1/1:98:1,97:1:36:97:3457:-280.203,-26.2019,0	1/1:112:0,112:0:0:112:3983:-326.014,-33.7154,0	1/1:84:0,84:0:0:84:2986:-252.321,-25.2865,0	0/1:11:8,3:8:288:3:108:-5.92594,0,-20.7715	1/1:81:0,81:0:0:81:2888:-222.43,-24.3834,0	1/1:33:0,33:0:0:33:1188:-99.4358,-9.93399,0	1/1:3:0,3:0:0:3:108:-8.55271,-0.90309,0	0/1:118:65,53:65:2328:53:1908:-114.726,0,-149.866	1/1:23:0,23:0:0:23:828:-69.0426,-6.92369,0	0/1:3:2,1:2:72:1:36:-2.22055,0,-5.53335	0/1:30:11,19:11:396:19:673:-47.3435,0,-24.9275	1/1:71:0,71:0:0:71:2548:-201.862,-21.3731,0	0/1:109:57,52:57:2037:52:1863:-120.712,0,-133.942	1/1:1:0,1:0:0:1:36:-3.29902,-0.30103,0	1/1:275:0,275:0:0:275:9844:-827.795,-82.7833,0	0/1:180:58,122:58:2073:122:4339:-304.41,0,-116.205	1/1:88:2,86:2:72:86:3077:-236.742,-20.4342,0	1/1:56:0,56:0:0:56:2012:-165.139,-16.8577,0	0/1:182:107,74:107:3840:74:2630:-162.329,0,-260.835	1/1:113:0,113:0:0:113:4048:-330.291,-34.0164,0	1/1:18:0,18:0:0:18:640:-50.1788,-5.41854,0	1/1:68:0,68:0:0:68:2444:-187.786,-20.47,0	0/1:110:54,56:54:1940:56:2016:-135.697,0,-130.95	1/1:15:0,15:0:0:15:540:-44.6451,-4.51545,0	1/1:42:0,42:0:0:42:1493:-114.107,-12.6433,0	0/1:64:23,41:23:828:41:1453:-93.8872,0,-43.8755	1/1:114:0,114:0:0:114:4104:-323.314,-34.3174,0	1/1:145:0,145:0:0:145:5182:-424.363,-43.6494,0	1/1:54:0,54:0:0:54:1940:-149.48,-16.2556,0	1/1:132:0,132:0:0:132:4752:-364.997,-39.736,0	1/1:18:0,18:0:0:18:648:-47.7769,-5.41854,0	1/1:113:0,112:0:0:112:4031:-316.059,-33.7154,0	0/1:84:30,54:30:1076:54:1936:-124.046,0,-57.7256	1/1:102:0,102:0:0:102:3637:-298.948,-30.7051,0	1/1:101:0,101:0:0:101:3636:-298.071,-30.404,0	1/1:70:0,70:0:0:70:2512:-207.726,-21.0721,0	0/1:94:48,46:48:1724:46:1656:-108.412,0,-114.23	1/1:146:0,146:0:0:146:5248:-428.28,-43.9504,0	0/1:43:21,22:21:752:22:792:-48.6407,0,-45.1552	1/1:78:0,77:0:0:77:2772:-208.731,-23.1793,0	1/1:65:0,65:0:0:65:2328:-179.29,-19.567,0	1/1:33:0,33:0:0:33:1182:-92.8173,-9.93399,0	0/1:77:47,30:47:1692:30:1076:-62.3669,0,-109.755	0/1:73:45,28:45:1616:28:1008:-59.5956,0,-110.602	1/1:132:0,132:0:0:132:4748:-388.389,-39.736,0	1/1:103:0,103:0:0:103:3696:-303.358,-31.0061,0
chr02	5544270	.	CG	TA,TG	158986	PASS	AB=0.496915,0.501402;ABP=3.15766,3.04075;AC=157,31;AF=0.835106,0.164894;AN=188;AO=6282,909;CIGAR=2X,1X1M;DP=7200;DPB=7200.5;DPRA=11.0492,1.00009;EPP=13644.2,1976.88;EPPR=5.18177;GTI=2;LEN=2,1;MEANALT=1.45161,2.05714;MQM=59.5716,59.8768;MQMR=60;NS=94;NUMALT=2;ODDS=3.96227;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=223032,32563;QR=36;RO=1;RPL=6282,909;RPP=13644.2,1976.88;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13644.2,1976.88;SAR=6282,909;SRF=0;SRP=5.18177;SRR=1;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:69:0,69,0:0:0:69,0:2427,0:-218.576,-20.7711,0,-218.576,-20.7711,-218.576	1/1:59:0,59,0:0:0:59,0:2070,0:-186.559,-17.7608,0,-186.559,-17.7608,-186.559	1/1:107:0,107,0:0:0:107,0:3788,0:-341.053,-32.2102,0,-341.053,-32.2102,-341.053	1/1:155:0,154,0:0:0:154,0:5458,0:-490.847,-46.3586,0,-490.847,-46.3586,-490.847	1/2:43:0,19,24:0:0:19,24:680,864:-126.303,-70.8578,-65.1383,-55.8036,0,-48.5789	1/2:56:0,27,29:0:0:27,29:950,1044:-162.802,-85.5449,-77.4171,-77.6126,0,-68.8828	1/1:79:0,79,0:0:0:79,0:2779,0:-250.349,-23.7814,0,-250.349,-23.7814,-250.349	1/1:135:0,134,1:0:0:134,1:4736,36:-425.247,-40.338,0,-422.309,-37.0408,-422.008	1/1:116:0,116,0:0:0:116,0:4084,0:-367.696,-34.9195,0,-367.696,-34.9195,-367.696	1/1:84:0,83,0:0:0:83,0:2929,0:-263.481,-24.9855,0,-263.481,-24.9855,-263.481	1/1:14:0,14,0:0:0:14,0:496,0:-44.9739,-4.21442,0,-44.9739,-4.21442,-44.9739	1/1:47:0,47,0:0:0:47,0:1680,0:-151.47,-14.1484,0,-151.47,-14.1484,-151.47	1/1:34:0,34,0:0:0:34,0:1207,0:-108.919,-10.235,0,-108.919,-10.235,-108.919	1/2:10:0,4,6:0:0:4,6:144,212:-29.3709,-17.6186,-16.4145,-12.1095,0,-10.3033	1/2:27:0,11,16:0:0:11,16:396,576:-79.6701,-47.3585,-44.0472,-32.6714,0,-27.8549	1/2:23:0,14,9:0:0:14,9:504,324:-67.9158,-26.7919,-22.5775,-41.4837,0,-38.7744	1/1:12:0,12,0:0:0:12,0:425,0:-38.5552,-3.61236,0,-38.5552,-3.61236,-38.5552	1/2:10:0,6,4:0:0:6,4:216,144:-29.7258,-12.1095,-10.3033,-17.976,0,-16.7719	1/1:17:0,17,0:0:0:17,0:612,0:-55.3693,-5.11751,0,-55.3693,-5.11751,-55.3693	1/2:211:0,100,111:0:0:100,111:3543,3959:-611.7,-323.085,-292.982,-288.97,0,-255.556	1/2:113:0,59,54:0:0:59,54:2109,1936:-330.064,-158.122,-140.362,-172.299,0,-156.043	1/1:141:0,141,0:0:0:141,0:4972,0:-447.626,-42.4452,0,-447.626,-42.4452,-447.626	1/1:108:0,108,0:0:0:108,0:3834,0:-345.237,-32.5112,0,-345.237,-32.5112,-345.237	1/2:50:0,27,23:0:0:27,23:960,809:-144.438,-66.2037,-58.0759,-78.5876,0,-71.6639	1/1:110:0,110,0:0:0:110,0:3885,0:-349.689,-33.1133,0,-349.689,-33.1133,-349.689	1/1:328:0,328,0:0:0:328,0:11709,0:-1053.44,-98.7378,0,-1053.44,-98.7378,-1053.44	1/1:211:0,210,0:0:0:210,0:7449,0:-670.031,-63.2163,0,-670.031,-63.2163,-670.031	1/1:11:0,11,0:0:0:11,0:394,0:-35.7991,-3.31133,0,-35.7991,-3.31133,-35.7991	1/1:265:0,264,0:0:0:264,0:9384,0:-844.09,-79.4719,0,-844.09,-79.4719,-844.09	1/1:118:0,118,0:0:0:118,0:4186,0:-376.157,-35.5215,0,-376.157,-35.5215,-376.157	1/2:120:0,61,59:0:0:61,59:2176,2101:-348.971,-171.597,-153.234,-177.73,0,-159.97	1/1:5:0,5,0:0:0:5,0:180,0:-16.5474,-1.50515,0,-16.5474,-1.50515,-16.5474	1/1:23:0,23,0:0:0:23,0:813,0:-73.485,-6.92369,0,-73.485,-6.92369,-73.485	1/1:7:0,7,0:0:0:7,0:239,0:-21.8419,-2.10721,0,-21.8419,-2.10721,-21.8419	1/2:13:0,2,11:0:0:2,11:70,388:-37.641,-31.946,-31.344,-6.04527,0,-2.73394	1/1:13:0,13,0:0:0:13,0:462,0:-41.9168,-3.91339,0,-41.9168,-3.91339,-41.9168	1/1:81:0,81,0:0:0:81,0:2890,0:-259.962,-24.3834,0,-259.962,-24.3834,-259.962	1/1:164:0,164,0:0:0:164,0:5829,0:-523.653,-49.3689,0,-523.653,-49.3689,-523.653	1/2:10:0,6,4:0:0:6,4:214,144:-29.5526,-12.1095,-10.3033,-17.8016,0,-16.5975	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/1:124:0,124,0:0:0:124,0:4390,0:-394.967,-37.3277,0,-394.967,-37.3277,-394.967	1/1:8:0,8,0:0:0:8,0:283,0:-25.7825,-2.40824,0,-25.7825,-2.40824,-25.7825	1/1:238:0,237,1:0:0:237,1:8454,36:-760.395,-71.3441,0,-757.458,-68.0469,-757.157	1/1:26:0,25,0:0:0:25,0:900,0:-80.9579,-7.52575,0,-80.9579,-7.52575,-80.9579	1/2:39:0,19,20:0:0:19,20:682,720:-114.648,-59.1082,-53.3886,-55.8991,0,-49.8785	1/1:149:0,149,0:0:0:149,0:5297,0:-476.629,-44.8535,0,-476.629,-44.8535,-476.629	1/2:143:0,59,84:0:0:59,84:2108,2997:-416.526,-244.674,-226.913,-172.209,0,-146.922	1/1:183:0,182,1:0:0:182,1:6423,36:-577.76,-54.7875,0,-574.822,-51.4902,-574.521	1/1:90:0,90,0:0:0:90,0:3181,0:-286.479,-27.0927,0,-286.479,-27.0927,-286.479	1/1:59:0,59,0:0:0:59,0:2106,0:-189.805,-17.7608,0,-189.805,-17.7608,-189.805	1/1:59:0,59,0:0:0:59,0:2105,0:-189.716,-17.7608,0,-189.716,-17.7608,-189.716	1/2:6:0,2,4:0:0:2,4:72,144:-17.9809,-12.1061,-11.504,-6.23466,0,-5.03054	1/1:113:0,113,0:0:0:113,0:4012,0:-361.224,-34.0164,0,-361.224,-34.0164,-361.224	1/1:50:0,50,0:0:0:50,0:1783,0:-160.751,-15.0515,0,-160.751,-15.0515,-160.751	1/1:9:0,9,0:0:0:9,0:315,0:-28.6881,-2.70927,0,-28.6881,-2.70927,-28.6881	1/2:172:0,97,75:0:0:97,75:3409,2700:-497.637,-220.658,-191.458,-277.335,0,-254.758	1/1:59:0,59,0:0:0:59,0:2089,0:-188.272,-17.7608,0,-188.272,-17.7608,-188.272	2/2:7:0,0,7:0:0:0,7:0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chr02	5581687	.	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chr02	5791411	.	G	T	165644	PASS	AB=0.475819;ABP=16.0324;AC=159;AF=0.845745;AN=188;AO=7515;CIGAR=1X;DP=8870;DPB=8870;DPRA=0;EPP=16321.6;EPPR=2934.5;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.9846;MQMR=60;NS=94;NUMALT=1;ODDS=2.19466;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268575;QR=48241;RO=1350;RPL=7515;RPP=16321.6;RPPR=2934.5;RPR=0;RUN=1;SAF=0;SAP=16321.6;SAR=7515;SRF=0;SRP=2934.5;SRR=1350;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:123:0,123:0:0:123:4372:-393.651,-37.0267,0	1/1:62:0,62:0:0:62:2209:-199.073,-18.6639,0	1/1:204:2,202:2:72:202:7229:-643.825,-54.5734,0	0/1:57:39,18:39:1396:18:640:-40.7706,0,-108.78	0/1:64:27,37:27:964:37:1328:-100.556,0,-67.8109	1/1:217:0,217:0:0:217:7780:-700.228,-65.3235,0	1/1:198:0,198:0:0:198:7062:-635.641,-59.6039,0	1/1:83:0,83:0:0:83:2965:-267.082,-24.9855,0	1/1:159:0,159:0:0:159:5689:-512.126,-47.8638,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:104:0,104:0:0:104:3722:-335.175,-31.3071,0	1/1:109:0,109:0:0:109:3874:-348.854,-32.8123,0	0/1:68:33,35:33:1170:35:1248:-92.1543,0,-85.1358	0/1:88:45,43:45:1612:43:1544:-112.762,0,-118.879	0/1:74:45,29:45:1603:29:1044:-71.9986,0,-122.283	1/1:83:1,82:1:36:82:2927:-260.065,-21.3872,0	0/1:92:42,50:42:1503:50:1773:-132.156,0,-107.869	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:134:81,53:81:2912:53:1881:-129.229,0,-221.976	0/1:132:76,56:76:2728:56:2012:-141.617,0,-206.027	1/1:76:0,75:0:0:75:2666:-239.827,-22.5773,0	1/1:92:0,92:0:0:92:3291:-296.409,-27.6948,0	0/1:98:61,37:61:2180:37:1318:-89.421,0,-166.965	1/1:82:0,82:0:0:82:2930:-263.935,-24.6845,0	1/1:301:0,301:0:0:301:10761:-968.392,-90.61,0	1/1:72:0,72:0:0:72:2565:-231.099,-21.6742,0	1/1:49:0,49:0:0:49:1755:-158.234,-14.7505,0	1/1:160:1,159:1:36:159:5695:-509.065,-44.5665,0	1/1:129:0,129:0:0:129:4596:-413.786,-38.8329,0	0/1:144:70,74:70:2500:74:2656:-195.937,0,-181.905	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:8:1,7:1:36:7:233:-18.8861,0,-1.19003	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:268:0,267:0:0:267:9541:-858.286,-80.375,0	1/1:103:0,103:0:0:103:3696:-332.842,-31.0061,0	0/1:79:38,40:38:1337:40:1428:-104.977,0,-96.7877	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:150:0,150:0:0:150:5303:-477.407,-45.1545,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:142:0,142:0:0:142:5069:-456.354,-42.7463,0	1/1:126:0,125:0:0:125:4488:-403.728,-37.6288,0	0/1:102:46,56:46:1639:56:1993:-148.937,0,-117.093	1/1:74:0,74:0:0:74:2639:-237.756,-22.2762,0	0/1:94:46,48:46:1640:48:1720:-126.789,0,-119.592	1/1:124:0,124:0:0:124:4452:-400.845,-37.3277,0	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	1/1:104:0,104:0:0:104:3706:-333.74,-31.3071,0	1/1:179:0,179:0:0:179:6418:-577.706,-53.8844,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:11:0,11:0:0:11:377:-34.2579,-3.31133,0	0/1:107:51,55:51:1824:55:1942:-142.784,0,-132.172	1/1:91:0,91:0:0:91:3256:-293.261,-27.3937,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	1/1:73:0,73:0:0:73:2624:-236.212,-21.9752,0	0/1:118:67,51:67:2383:51:1824:-128.92,0,-179.206	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:124:0,124:0:0:124:4433:-399.14,-37.3277,0	0/1:250:117,133:117:4192:133:4730:-350.599,0,-302.204	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:189:81,108:81:2888:108:3857:-290.397,0,-203.262	1/1:39:1,38:1:36:38:1345:-117.75,-8.1419,0	1/1:27:0,27:0:0:27:942:-85.0898,-8.12781,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:103:51,52:51:1828:52:1864:-137.033,0,-133.795	1/1:25:0,25:0:0:25:877:-79.2452,-7.52575,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:62:34,28:34:1216:28:1008:-72.3725,0,-91.0827	1/1:216:0,216:0:0:216:7731:-695.821,-65.0225,0	1/1:116:0,116:0:0:116:4145:-373.232,-34.9195,0	1/1:152:0,152:0:0:152:5417:-487.661,-45.7566,0	1/1:135:0,135:0:0:135:4833:-435.123,-40.6391,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:108:0,108:0:0:108:3857:-347.325,-32.5112,0	0/1:109:66,43:66:2360:43:1544:-106.441,0,-179.846	1/1:124:0,124:0:0:124:4433:-399.14,-37.3277,0	1/1:126:0,126:0:0:126:4481:-403.458,-37.9298,0	1/1:84:0,84:0:0:84:2996:-269.873,-25.2865,0	0/1:126:70,56:70:2511:56:2016:-143.783,0,-188.311	1/1:196:3,193:3:108:193:6904:-611.352,-48.9267,0	0/1:65:36,29:36:1283:29:1032:-73.6265,0,-96.2057	1/1:92:0,92:0:0:92:3285:-295.868,-27.6948,0	1/1:83:0,83:0:0:83:2979:-268.333,-24.9855,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:68:35,33:35:1248:33:1175:-85.5869,0,-92.1548	0/1:99:69,30:69:2460:30:1076:-67.3509,0,-191.853	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:144:0,144:0:0:144:5170:-465.439,-43.3483,0
chr02	5961073	.	G	A	139658	PASS	AB=0.513529;ABP=5.83052;AC=158;AF=0.849462;AN=186;AO=6324;CIGAR=1X;DP=7205;DPB=7205;DPRA=0;EPP=13666;EPPR=1872.89;GTI=3;LEN=1;MEANALT=1;MQM=59.985;MQMR=59.975;NS=93;NUMALT=1;ODDS=0.187797;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224875;QR=31522;RO=881;RPL=8;RPP=13666;RPPR=1864.32;RPR=6316;RUN=1;SAF=6324;SAP=13735.4;SAR=0;SRF=880;SRP=1907.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:492:-44.6118,-4.21442,0	1/1:107:0,107:0:0:107:3822:-344.178,-32.2102,0	1/1:95:0,95:0:0:95:3361:-302.708,-28.5979,0	1/1:223:0,223:0:0:223:7904:-711.386,-67.1297,0	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/1:38:15,23:15:540:23:813:-62.0508,0,-37.4974	1/1:108:0,108:0:0:108:3833:-345.167,-32.5112,0	1/1:77:1,76:1:36:76:2708:-240.249,-19.581,0	1/1:61:0,61:0:0:61:2145:-193.316,-18.3628,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:71:0,71:0:0:71:2532:-228.132,-21.3731,0	1/1:59:1,58:1:36:58:2064:-182.433,-14.1625,0	0/1:40:14,26:14:495:26:932:-72.1577,0,-32.8418	0/1:48:20,28:20:720:28:1004:-76.2264,0,-50.6793	0/1:38:21,17:21:752:17:600:-42.8901,0,-56.5671	1/1:68:0,68:0:0:68:2408:-216.973,-20.47,0	0/1:49:27,22:27:972:22:788:-56.4943,0,-73.0474	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:79:25,54:25:900:54:1908:-148.214,0,-57.5396	0/1:87:32,55:32:1148:55:1948:-149.404,0,-77.4402	1/1:90:0,90:0:0:90:3213:-289.392,-27.0927,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	0/1:98:54,44:54:1936:44:1576:-112.631,0,-145.015	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:213:0,213:0:0:213:7540:-678.647,-64.1194,0	1/1:177:0,177:0:0:177:6297:-566.824,-53.2823,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:274:0,274:0:0:274:9737:-876.283,-82.4822,0	1/1:114:0,114:0:0:114:4040:-363.791,-34.3174,0	0/1:112:60,52:60:2145:52:1845:-132.613,0,-159.41	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:184:1,183:1:36:183:6525:-583.737,-51.7912,0	1/1:153:0,153:0:0:153:5412:-487.211,-46.0576,0	0/1:46:24,22:24:860:22:788:-57.3974,0,-63.8745	.:.:.:.:.:.:.:.	1/1:121:0,121:0:0:121:4315:-388.521,-36.4246,0	1/1:18:0,18:0:0:18:640:-57.9288,-5.41854,0	1/1:78:0,78:0:0:78:2736:-246.478,-23.4803,0	1/1:74:0,74:0:0:74:2650:-238.746,-22.2762,0	0/1:66:43,23:43:1544:23:818:-54.0739,0,-119.385	1/1:61:0,61:0:0:61:2170:-195.564,-18.3628,0	0/1:86:54,32:54:1925:32:1137:-76.7484,0,-147.636	1/1:136:3,133:3:108:133:4736:-416.326,-30.8649,0	1/1:93:0,93:0:0:93:3323:-299.288,-27.9958,0	1/1:138:0,138:0:0:138:4901:-441.242,-41.5421,0	1/1:152:0,152:0:0:152:5371:-483.525,-45.7566,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:59:0,59:0:0:59:2094:-188.726,-17.7608,0	1/1:17:0,17:0:0:17:597:-54.0561,-5.11751,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:86:39,47:39:1388:47:1676:-125.239,0,-99.3303	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:70:36,34:36:1292:34:1212:-88.3142,0,-95.5117	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:270:0,270:0:0:270:9551:-859.551,-81.2781,0	0/1:188:99,89:99:3552:89:3172:-229.109,0,-263.294	1/1:50:1,49:1:36:49:1745:-153.734,-11.4532,0	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:97:50,47:50:1777:47:1658:-120.304,0,-131.011	1/1:63:1,62:1:36:62:2216:-196.106,-15.3666,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:63:0,63:0:0:63:2226:-200.593,-18.9649,0	0/1:80:31,49:31:1107:49:1752:-133.882,0,-75.8578	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:104:0,104:0:0:104:3713:-334.371,-31.3071,0	0/1:63:29,34:29:1032:34:1208:-90.056,0,-74.2286	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0	1/1:150:0,150:0:0:150:5313:-478.305,-45.1545,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:144:6,138:6:216:138:4858:-417.585,-23.5578,0	0/1:10:1,9:1:36:9:308:-25.041,0,-0.587975	1/1:128:0,128:0:0:128:4584:-412.725,-38.5318,0	0/1:95:33,62:33:1180:62:2218:-171.287,0,-77.9102	1/1:207:2,205:2:72:205:7293:-649.311,-55.4765,0	1/1:87:2,85:2:72:85:3019:-265.104,-19.3529,0	1/1:45:0,45:0:0:45:1601:-144.378,-13.5464,0	0/1:78:41,37:41:1453:37:1309:-94.6301,0,-107.584	1/1:157:0,157:0:0:157:5593:-503.494,-47.2617,0	0/1:42:20,22:20:720:22:780:-57.8798,0,-52.4855	1/1:68:0,68:0:0:68:2417:-217.784,-20.47,0	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:64:36,28:36:1280:28:992:-70.3285,0,-96.2373	0/1:74:45,29:45:1616:29:1040:-71.6381,0,-123.454	1/1:134:0,134:0:0:134:4783:-430.628,-40.338,0	1/1:77:0,77:0:0:77:2745:-247.291,-23.1793,0
chr02	5961107	.	G	A	12571.8	PASS	AB=0.473376;ABP=13.5322;AC=28;AF=0.150538;AN=186;AO=823;CIGAR=1X;DP=7096;DPB=7096;DPRA=0.887563;EPP=1790.13;EPPR=13618.1;GTI=3;LEN=1;MEANALT=1;MQM=60;MQMR=59.9876;NS=93;NUMALT=1;ODDS=0.106978;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28810;QR=221861;RO=6270;RPL=823;RPP=1790.13;RPPR=13618.1;RPR=0;RUN=1;SAF=823;SAP=1790.13;SAR=0;SRF=6270;SRP=13618.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:105:105,0:105:3708:0:0:0,-31.6081,-333.924	0/0:97:97,0:97:3434:0:0:0,-29.1999,-309.275	0/0:216:216,0:216:7675:0:0:0,-65.0225,-690.79	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	0/1:34:22,12:22:780:12:428:-28.6238,0,-60.288	0/0:105:105,0:105:3726:0:0:0,-31.6081,-335.543	0/0:74:73,1:73:2611:1:36:0,-18.6779,-231.638	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/0:38:38,0:38:1336:0:0:0,-11.4391,-120.537	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.666	0/0:68:68,0:68:2373:0:0:0,-20.47,-213.829	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:43:26,17:26:905:17:591:-40.571,0,-68.8183	0/1:43:26,17:26:936:17:598:-41.204,0,-71.6152	0/1:36:17,19:17:595:19:667:-49.5175,0,-43.0396	0/0:69:69,0:69:2428:0:0:0,-20.7711,-218.775	0/1:45:21,24:21:736:24:852:-63.454,0,-53.016	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/1:78:53,25:53:1896:25:888:-56.7587,0,-147.438	0/1:88:56,32:56:2004:32:1109:-73.6241,0,-154.143	0/0:89:89,0:89:3179:0:0:0,-26.7917,-285.844	0/0:54:54,0:54:1896:0:0:0,-16.2556,-170.916	0/1:94:43,51:43:1528:51:1772:-131.462,0,-109.516	0/0:30:30,0:30:1056:0:0:0,-9.0309,-95.3509	0/0:217:217,0:217:7673:0:0:0,-65.3235,-690.611	0/0:175:175,0:175:6213:0:0:0,-52.6802,-559.269	0/0:42:42,0:42:1484:0:0:0,-12.6433,-133.852	0/0:275:275,0:275:9734:0:0:0,-82.7832,-876.018	0/0:112:112,0:112:3969:0:0:0,-33.7154,-357.403	0/1:104:50,54:50:1784:54:1915:-141.32,0,-129.536	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:183:183,0:183:6403:0:0:0,-55.0885,-576.369	0/0:155:155,0:155:5463:0:0:0,-46.6596,-491.803	0/1:45:22,23:22:780:23:804:-59.133,0,-56.9767	.:.:.:.:.:.:.:.	0/0:122:121,0:121:4285:0:0:0,-36.4246,-385.432	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:80:80,0:80:2851:0:0:0,-24.0824,-256.828	0/0:78:77,1:77:2710:1:36:0,-19.8821,-240.547	0/1:64:22,42:22:770:42:1482:-114.408,0,-50.3534	0/0:60:60,0:60:2124:0:0:0,-18.0618,-191.429	0/1:81:31,50:31:1108:50:1767:-134.929,0,-75.6476	0/0:135:132,3:132:4648:3:100:0,-31.3086,-409.101	0/0:88:88,0:88:3121:0:0:0,-26.4906,-281.117	0/0:136:135,0:135:4795:0:0:0,-40.639,-431.347	0/0:152:152,0:152:5384:0:0:0,-45.7566,-484.696	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:59:59,0:59:2070:0:0:0,-17.7608,-186.567	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:84:47,37:47:1676:37:1305:-92.4629,0,-125.841	0/0:31:31,0:31:1096:0:0:0,-9.33193,-98.9499	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/0:54:54,0:54:1904:0:0:0,-16.2556,-171.635	0/1:69:34,35:34:1199:35:1204:-87.8885,0,-87.4437	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:274:274,0:274:9698:0:0:0,-82.4822,-872.78	0/1:182:89,93:89:3102:93:3264:-239.194,0,-224.62	0/0:49:48,1:48:1678:1:36:0,-11.1522,-147.704	0/0:76:76,0:76:2671:0:0:0,-22.8783,-240.635	0/1:95:47,48:47:1675:48:1706:-125.228,0,-122.439	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.44	0/0:23:23,0:23:810:0:0:0,-6.92369,-73.219	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.246	0/1:78:50,28:50:1774:28:975:-64.5812,0,-136.461	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:106:106,0:106:3758:0:0:0,-31.9092,-338.422	0/1:56:31,25:31:1083:25:865:-61.3055,0,-80.9176	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:148:148,0:148:5282:0:0:0,-44.5524,-475.516	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:141:135,6:135:4753:6:207:0,-23.4783,-408.965	0/1:11:9,2:9:308:2:57:-2.10198,0,-24.7405	0/0:127:127,0:127:4531:0:0:0,-38.2308,-407.958	0/1:92:59,33:59:2081:33:1165:-77.4602,0,-159.864	0/0:206:205,1:205:7240:1:36:0,-58.4139,-648.063	0/0:83:82,1:82:2871:1:36:0,-21.3872,-255.03	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/1:77:39,38:39:1371:38:1288:-93.0335,0,-100.508	0/0:152:152,0:152:5333:0:0:0,-45.7566,-480.109	0/1:38:21,17:21:744:17:579:-40.9919,0,-55.8452	0/0:61:61,0:61:2164:0:0:0,-18.3628,-195.027	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/0:19:19,0:19:668:0:0:0,-5.71957,-60.4457	0/1:61:28,33:28:983:33:1140:-84.5395,0,-70.4197	0/1:72:30,42:30:1046:42:1470:-110.916,0,-72.7742	0/0:133:132,0:132:4691:0:0:0,-39.736,-421.991	0/0:78:78,0:78:2741:0:0:0,-23.4803,-246.934
chr02	6095318	.	G	A	35896.7	PASS	AB=0.411125;ABP=394.008;AC=42;AF=0.223404;AN=188;AO=2354;CIGAR=1X;DP=9460;DPB=9460;DPRA=1.99375;EPP=5105.97;EPPR=15407.4;GTI=1;LEN=1;MEANALT=1;MQM=59.8335;MQMR=58.623;NS=94;NUMALT=1;ODDS=1.38324;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83448;QR=253863;RO=7106;RPL=0;RPP=5114.66;RPPR=15407.4;RPR=2354;RUN=1;SAF=2353;SAP=5105.97;SAR=1;SRF=7106;SRP=15433.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:36,26:36:1292:26:917:-64.167,0,-96.9172	0/0:122:122,0:122:4339:0:0:0,-36.7257,-389.537	0/1:286:167,119:167:5970:119:4225:-294.337,0,-451.011	0/0:156:156,0:156:5604:0:0:0,-46.9607,-504.074	0/1:89:42,47:42:1512:47:1658:-122.667,0,-109.259	0/1:79:41,38:41:1472:38:1308:-94.2297,0,-108.936	0/0:151:150,1:150:5400:1:36:0,-41.8573,-482.152	0/1:216:114,102:114:4042:102:3605:-259.348,0,-298.79	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.812	0/0:79:79,0:79:2810:0:0:0,-23.7814,-253.036	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.857	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.417	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6108	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.059	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1299	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.278	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8798	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.919	0/1:239:115,124:115:4106:124:4407:-324.85,0,-296.613	0/1:155:81,74:81:2867:74:2617:-189.116,0,-211.05	0/1:290:179,111:179:6383:111:3953:-268.641,0,-486.557	0/0:68:68,0:68:2444:0:0:0,-20.47,-219.858	0/0:75:70,5:70:2501:5:180:0,-6.02518,-208.789	0/0:52:52,0:52:1857:0:0:0,-15.6536,-167.408	0/1:423:299,124:299:10706:124:4414:-270.013,0,-835.74	0/0:204:204,0:204:7298:0:0:0,-61.4101,-656.275	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:452:305,147:305:10866:147:5186:-330.806,0,-840.778	0/1:250:151,99:151:5375:99:3476:-237.788,0,-408.4	0/0:88:86,2:86:3058:2:72:0,-19.6539,-268.443	0/1:16:7,9:7:252:9:316:-23.9624,0,-18.1837	0/1:22:14,8:14:500:8:284:-19.2807,0,-38.6684	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:13:9,4:9:324:4:144:-9.16608,0,-25.5563	0/1:199:127,72:127:4564:72:2565:-171.191,0,-350.632	0/1:286:181,105:181:6504:105:3718:-248.727,0,-498.986	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5065	0/0:100:100,0:100:3577:0:0:0,-30.103,-321.981	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.2399	0/0:149:149,0:149:5296:0:0:0,-44.8535,-476.505	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.242	0/1:43:19,24:19:684:24:856:-64.416,0,-48.8495	0/1:162:99,63:99:3507:63:2199:-149.397,0,-266.122	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.716	0/0:180:180,0:180:6461:0:0:0,-54.1854,-580.895	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.089	0/0:116:116,0:116:4112:0:0:0,-34.9195,-369.829	0/1:215:148,67:148:5275:67:2389:-150.543,0,-409.755	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5504	0/0:112:111,1:111:3965:1:36:0,-30.1171,-353.353	0/0:53:53,0:53:1885:0:0:0,-15.9546,-168.346	0/1:18:15,3:15:521:3:108:-4.65663,0,-41.7459	0/0:47:47,0:47:1677:0:0:0,-14.1484,-151.215	0/0:75:74,1:74:2641:1:36:0,-18.979,-234.214	0/1:9:5,4:5:180:4:136:-9.86627,0,-13.8382	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7756	0/0:68:68,0:68:2418:0:0:0,-20.47,-217.579	0/1:80:40,40:40:1425:40:1420:-103.997,0,-104.22	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1719	0/0:168:168,0:168:5964:0:0:0,-50.573,-536.275	0/1:206:97,109:97:3473:109:3854:-284.89,0,-250.682	0/1:58:49,9:49:1745:9:320:-11.6826,0,-139.644	0/1:118:70,48:70:2501:48:1700:-117.764,0,-189.747	0/1:223:86,137:86:3073:137:4888:-372.937,0,-209.143	0/1:181:99,82:99:3522:82:2921:-208.637,0,-262.304	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:103:74,29:74:2600:29:1012:-60.3824,0,-203.19	0/1:67:35,32:35:1260:32:1152:-83.8211,0,-93.4109	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7209	0/1:239:135,104:135:4814:104:3705:-261.701,0,-361.316	0/1:66:24,42:24:864:42:1477:-113.354,0,-58.2146	0/1:233:130,103:130:4634:103:3627:-256.493,0,-346.879	0/0:189:188,1:188:6737:1:36:0,-53.2964,-601.996	0/1:231:152,79:152:5410:79:2811:-183.618,0,-417.396	0/1:140:96,44:96:3429:44:1572:-99.6274,0,-266.429	0/1:14:7,7:7:252:7:244:-18.085,0,-18.8145	0/0:120:120,0:120:4307:0:0:0,-36.1236,-387.331	0/0:87:87,0:87:3117:0:0:0,-26.1896,-280.064	0/0:194:194,0:194:6919:0:0:0,-58.3998,-622.242	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.412	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.81	0/0:29:29,0:29:1044:0:0:0,-8.72987,-93.6844	0/0:76:76,0:76:2732:0:0:0,-22.8783,-245.82	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.0929	0/1:68:42,26:42:1512:26:932:-63.7288,0,-115.905	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.74	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:58:29,29:29:1044:29:1032:-75.7337,0,-76.7205	0/1:53:15,38:15:536:38:1364:-107.1,0,-32.5915	0/0:127:127,0:127:4534:0:0:0,-38.2308,-407.5	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.815
chr02	6095328	.	G	A	137635	PASS	AB=0.579071;ABP=303.486;AC=145;AF=0.771277;AN=188;AO=6766;CIGAR=1X;DP=9122;DPB=9122;DPRA=0;EPP=13831;EPPR=4918.84;GTI=1;LEN=1;MEANALT=1.05319;MQM=58.5974;MQMR=59.8843;NS=94;NUMALT=1;ODDS=0.251831;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235765;QR=84167;RO=2351;RPL=101;RPP=13831;RPPR=4910.32;RPR=6665;RUN=1;SAF=6766;SAP=14695.2;SAR=0;SRF=2350;SRP=5099.46;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:27,36:27:964:36:1255:-93.6646,0,-68.0982	1/1:120:0,120:0:0:120:4212:-379.1,-36.1236,0	0/1:283:119,164:119:4260:164:5708:-428.322,0,-298.387	1/1:151:0,151:0:0:151:5212:-468.837,-45.4555,0	0/1:85:48,37:48:1728:37:1282:-89.8712,0,-130.218	0/1:77:38,39:38:1360:39:1373:-100.686,0,-99.5213	1/1:140:3,137:3:108:137:4771:-419.214,-32.069,0	0/1:202:103,99:103:3681:99:3415:-246.606,0,-270.486	1/1:76:0,76:0:0:76:2653:-238.875,-22.8783,0	1/1:76:0,76:0:0:76:2693:-242.516,-22.8783,0	1/1:33:2,31:2:72:31:1069:-89.6691,-3.09727,0	1/1:44:0,43:0:0:43:1492:-134.199,-12.9443,0	1/1:28:0,28:0:0:28:973:-87.8084,-8.42884,0	1/1:18:0,18:0:0:18:632:-57.2068,-5.41854,0	1/1:30:0,30:0:0:30:1032:-93.1429,-9.0309,0	1/1:16:1,15:1:21:15:536:-46.4298,-2.71653,0	1/1:52:0,52:0:0:52:1848:-166.479,-15.6536,0	1/1:19:0,19:0:0:19:676:-61.1624,-5.71957,0	1/1:30:0,30:0:0:30:1056:-95.2792,-9.0309,0	0/1:232:123,108:123:4420:108:3722:-264.29,0,-328.069	0/1:150:75,75:75:2696:75:2616:-189.687,0,-197.728	0/1:284:109,174:109:3897:174:6076:-460.824,0,-265.388	1/1:67:0,67:0:0:67:2349:-211.469,-20.169,0	1/1:73:5,68:5:180:68:2396:-199.347,-5.42313,0	1/1:51:0,51:0:0:51:1772:-159.763,-15.3525,0	0/1:418:124,294:124:4433:294:10278:-798.814,0,-273.26	1/1:198:0,198:0:0:198:6913:-621.733,-59.6039,0	1/1:24:0,24:0:0:24:832:-75.1967,-7.22472,0	0/1:428:143,284:143:5116:284:9881:-759.43,0,-331.675	0/1:244:97,147:97:3484:147:5171:-390.678,0,-240.249	1/1:83:2,81:2:72:81:2810:-246.137,-18.1488,0	0/1:16:9,7:9:320:7:232:-16.3769,0,-24.3259	0/1:20:8,12:8:288:12:428:-32.793,0,-20.2468	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:5:2,3:2:72:3:93:-7.17158,0,-5.33157	0/1:10:2,8:2:72:8:288:-23.2117,0,-3.82642	0/1:194:69,125:69:2484:125:4385:-336.091,0,-165.41	0/1:272:100,172:100:3554:172:5992:-457.292,0,-238.187	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	0/1:6:2,4:2:72:4:144:-11.5065,0,-5.03054	1/1:96:0,96:0:0:96:3337:-300.373,-28.8989,0	0/1:16:2,14:2:72:14:490:-39.4823,0,-2.02024	1/1:141:0,141:0:0:141:4968:-446.865,-42.4452,0	1/1:42:1,41:1:36:41:1452:-127.204,-9.04499,0	0/1:41:23,18:23:828:18:642:-45.6896,0,-62.5011	0/1:158:61,97:61:2192:97:3397:-257.643,0,-149.975	1/1:50:0,50:0:0:50:1742:-157.017,-15.0515,0	1/1:172:0,172:0:0:172:5985:-538.173,-51.7772,0	1/1:98:0,98:0:0:98:3422:-308.166,-29.5009,0	1/1:107:0,107:0:0:107:3760:-337.914,-32.2102,0	0/1:205:67,138:67:2400:138:4744:-365.114,0,-154.545	1/1:4:0,4:0:0:4:144:-13.312,-1.20412,0	1/1:106:2,103:2:72:103:3547:-312.564,-25.1313,0	1/1:52:0,52:0:0:52:1806:-161.448,-15.6536,0	0/1:18:3,15:3:108:15:532:-42.6867,0,-4.65663	1/1:45:0,45:0:0:45:1572:-141.762,-13.5464,0	1/1:74:1,73:1:36:73:2542:-225.347,-18.6779,0	0/1:9:4,5:4:144:5:180:-13.8382,0,-10.6043	0/1:10:4,6:4:144:6:208:-16.0453,0,-10.3033	1/1:61:1,60:1:36:60:2089:-184.387,-14.7646,0	0/1:79:41,38:41:1464:38:1328:-95.8134,0,-108.257	1/1:6:0,6:0:0:6:216:-19.7745,-1.80618,0	1/1:160:1,159:1:36:159:5534:-494.112,-44.5665,0	0/1:199:108,91:108:3869:91:3149:-223.681,0,-288.344	0/1:57:9,48:9:324:48:1692:-134.969,0,-12.3471	0/1:112:48,64:48:1724:64:2210:-165.365,0,-121.73	0/1:218:137,81:137:4904:81:2826:-188.439,0,-375.883	0/1:177:82,95:82:2952:95:3287:-242.492,0,-212.63	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/1:99:26,73:26:928:73:2506:-195.958,0,-54.0363	0/1:68:38,30:38:1364:30:1068:-75.8676,0,-102.591	1/1:20:0,20:0:0:20:708:-63.994,-6.0206,0	0/1:222:104,118:104:3724:118:4010:-294.155,0,-268.528	0/1:65:41,24:41:1459:24:848:-57.0727,0,-112.038	0/1:229:102,127:102:3636:127:4415:-328.174,0,-258.506	1/1:183:1,182:1:36:182:6255:-558.749,-51.4902,0	0/1:223:77,146:77:2756:146:5140:-395.544,0,-181.152	0/1:135:44,91:44:1565:91:3136:-241.618,0,-100.501	0/1:14:7,7:7:252:7:244:-18.085,0,-18.8145	1/1:107:0,107:0:0:107:3671:-330.355,-32.2102,0	1/1:86:0,86:0:0:86:2973:-267.641,-25.8886,0	1/1:180:0,180:0:0:180:6282:-565.029,-54.1854,0	1/1:77:1,76:1:36:76:2696:-239.172,-19.581,0	1/1:33:1,32:1:36:32:1136:-98.893,-6.33572,0	1/1:26:2,24:2:72:24:852:-69.9341,-0.990058,0	1/1:75:0,75:0:0:75:2637:-237.306,-22.5773,0	1/1:20:0,20:0:0:20:716:-64.7318,-6.0206,0	0/1:65:26,39:26:936:39:1384:-105.292,0,-64.9925	1/1:41:1,40:1:36:40:1367:-119.717,-8.74396,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:58:29,29:29:1035:29:1009:-73.5647,0,-76.0033	0/1:53:38,15:38:1353:15:536:-32.5589,0,-106.108	1/1:119:0,119:0:0:119:4062:-365.417,-35.8226,0	1/1:48:0,48:0:0:48:1699:-153.128,-14.4494,0
chr02	6095347	.	G	A	145182	PASS	AB=0.586655;ABP=374.456;AC=145;AF=0.771277;AN=188;AO=7051;CIGAR=1X;DP=9429;DPB=9429;DPRA=0;EPP=15314.1;EPPR=5155.92;GTI=1;LEN=1;MEANALT=1.01064;MQM=58.5962;MQMR=59.8843;NS=94;NUMALT=1;ODDS=1.99986;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=252591;QR=85003;RO=2377;RPL=7051;RPP=15314.1;RPPR=5164.6;RPR=0;RUN=1;SAF=7051;SAP=15314.1;SAR=0;SRF=2376;SRP=5155.92;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:26,35:26:936:35:1260:-94.3399,0,-66.1829	1/1:124:0,124:0:0:124:4419:-397.469,-37.3277,0	0/1:285:120,165:120:4277:165:5922:-447.028,0,-299.314	1/1:156:0,156:0:0:156:5589:-502.75,-46.9607,0	0/1:86:48,38:48:1705:38:1351:-95.7923,0,-127.845	0/1:80:39,41:39:1400:41:1472:-108.635,0,-102.217	1/1:150:3,147:3:108:147:5276:-464.523,-35.0793,0	0/1:214:107,107:107:3803:107:3848:-281.938,0,-277.424	1/1:81:0,81:0:0:81:2874:-258.786,-24.3834,0	1/1:76:0,76:0:0:76:2713:-244.326,-22.8783,0	1/1:33:2,31:2:72:31:1112:-93.5432,-3.09727,0	1/1:48:0,48:0:0:48:1716:-154.654,-14.4494,0	1/1:28:0,28:0:0:28:1002:-90.4502,-8.42884,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:30:0,30:0:0:30:1076:-97.0523,-9.0309,0	1/1:16:1,15:1:36:15:540:-45.2931,-1.21821,0	1/1:54:0,54:0:0:54:1940:-174.755,-16.2556,0	1/1:18:0,18:0:0:18:648:-58.6413,-5.41854,0	1/1:31:0,31:0:0:31:1112:-100.32,-9.33193,0	0/1:238:124,113:124:4444:113:4044:-291.308,0,-328.424	0/1:156:75,81:75:2681:81:2904:-213.218,0,-194.571	0/1:294:111,183:111:3957:183:6545:-499.869,0,-267.793	1/1:68:0,68:0:0:68:2443:-219.778,-20.47,0	1/1:74:5,69:5:180:69:2461:-205.191,-5.72416,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:416:122,294:122:4369:294:10536:-822.549,0,-268.15	1/1:204:0,204:0:0:204:7316:-657.906,-61.4101,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:452:146,306:146:5231:306:10909:-844.575,0,-334.849	0/1:251:100,151:100:3584:151:5397:-409.223,0,-247.139	1/1:89:2,87:2:72:87:3128:-274.697,-19.9549,0	0/1:16:9,7:9:320:7:252:-18.1837,0,-24.3259	0/1:23:8,15:8:288:15:534:-41.4413,0,-19.3437	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:13:3,10:3:104:10:351:-27.9712,0,-5.67874	0/1:199:72,127:72:2559:127:4560:-350.273,0,-170.653	0/1:284:103,181:103:3647:181:6496:-498.947,0,-242.94	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:6:2,4:2:72:4:144:-11.5065,0,-5.03054	1/1:99:0,99:0:0:99:3560:-320.426,-29.802,0	0/1:15:2,13:2:68:13:468:-37.7811,0,-1.94226	1/1:147:0,147:0:0:147:5245:-471.697,-44.2514,0	1/1:42:1,41:1:36:41:1464:-128.324,-9.04499,0	0/1:43:24,19:24:864:19:684:-48.8495,0,-65.1375	0/1:160:61,99:61:2181:99:3536:-269.658,0,-148.382	1/1:53:0,53:0:0:53:1900:-171.235,-15.9546,0	1/1:179:0,179:0:0:179:6404:-576.109,-53.8844,0	1/1:102:0,102:0:0:102:3668:-330.284,-30.7051,0	1/1:115:0,115:0:0:115:4108:-368.797,-34.6185,0	0/1:214:66,148:66:2352:148:5305:-412.719,0,-147.515	1/1:5:0,5:0:0:5:180:-16.5504,-1.50515,0	1/1:111:2,109:2:72:109:3878:-342.288,-26.5776,0	1/1:54:0,54:0:0:54:1940:-172.77,-16.2556,0	0/1:18:3,15:3:108:15:536:-43.0484,0,-4.65663	1/1:47:0,47:0:0:47:1692:-152.559,-14.1484,0	1/1:74:1,73:1:36:73:2624:-232.691,-18.6779,0	0/1:9:4,5:4:144:5:180:-13.8382,0,-10.6043	0/1:10:4,6:4:144:6:216:-16.7756,0,-10.3033	1/1:67:1,66:1:36:66:2372:-209.845,-16.5707,0	0/1:80:41,39:41:1463:39:1404:-102.333,0,-107.865	1/1:6:0,6:0:0:6:212:-19.4171,-1.80618,0	1/1:166:0,166:0:0:166:5937:-533.646,-49.971,0	0/1:204:106,98:106:3808:98:3512:-254.662,0,-281.487	0/1:56:9,47:9:324:47:1688:-134.921,0,-12.6482	0/1:117:49,68:49:1760:68:2437:-184.289,0,-123.463	0/1:222:138,84:138:4933:84:2993:-202.739,0,-377.285	0/1:179:82,97:82:2948:97:3463:-257.602,0,-211.668	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:103:28,75:28:1008:75:2696:-211.796,0,-60.0303	0/1:69:39,30:39:1400:30:1076:-76.2505,0,-105.528	1/1:20:0,20:0:0:20:715:-64.6552,-6.0206,0	0/1:242:107,135:107:3835:135:4852:-363.815,0,-272.491	0/1:65:41,24:41:1457:24:860:-58.1549,0,-111.857	0/1:237:105,132:105:3757:132:4723:-353.479,0,-266.982	1/1:189:1,188:1:36:188:6756:-603.704,-53.2964,0	0/1:225:76,149:76:2728:149:5350:-413.839,0,-178.016	0/1:139:44,95:44:1568:95:3404:-264.482,0,-99.5685	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:119:0,119:0:0:119:4263:-383.763,-35.8226,0	1/1:87:0,87:0:0:87:3132:-281.842,-26.1896,0	1/1:194:0,194:0:0:194:6968:-626.628,-58.3998,0	1/1:78:1,77:1:36:77:2757:-244.695,-19.8821,0	1/1:33:1,32:1:36:32:1152:-100.333,-6.33572,0	1/1:29:2,27:2:72:27:960:-79.5095,-1.89315,0	1/1:75:0,75:0:0:75:2696:-242.586,-22.5773,0	1/1:20:0,20:0:0:20:710:-64.1967,-6.0206,0	0/1:67:25,42:25:896:42:1491:-114.315,0,-60.7913	1/1:41:1,40:1:36:40:1440:-126.264,-8.74396,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:59:30,29:30:1072:29:1039:-75.9779,0,-79.0317	0/1:53:38,15:38:1368:15:540:-32.9203,0,-107.46	1/1:126:0,126:0:0:126:4502:-405.004,-37.9298,0	1/1:50:0,50:0:0:50:1793:-161.58,-15.0515,0
chr02	6095439	.	GTTAA	GTAA,GTAAA	185353	PASS	AB=0.574495,0.421034;ABP=272.508,305.831;AC=146,42;AF=0.776596,0.223404;AN=188;AO=6752,2363;CIGAR=1M1D3M,2M1X2M;DP=9157;DPB=7804.2;DPRA=0,1.87337;EPP=14664.8,5134.2;EPPR=7.35324;GTI=3;LEN=1,1;MEANALT=1.87234,2.51111;MQM=59.6866,36.609;MQMR=38;NS=94;NUMALT=2;ODDS=4.15384;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=239212,83732;QR=52;RO=2;RPL=0,0;RPP=14664.8,5134.2;RPPR=7.35324;RPR=6752,2363;RUN=1,1;SAF=0,0;SAP=14664.8,5134.2;SAR=6752,2363;SRF=0;SRP=7.35324;SRR=2;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:63:0,38,25:0:0:38,25:1355,896:-179.338,-68.8805,-57.4414,-110.802,0,-103.277	1/1:74:0,73,0:0:0:73,0:2588,0:-232.924,-21.9752,0,-232.924,-21.9752,-232.924	1/2:121:1,64,55:1:22:64,55:2277,1950:-332.139,-146.883,-129.164,-184.131,0,-169.12	1/1:146:0,145,0:0:0:145,0:5098,0:-458.381,-43.6494,0,-458.381,-43.6494,-458.381	1/2:92:0,45,47:0:0:45,47:1603,1639:-253.402,-122.738,-109.192,-131.004,0,-116.855	1/2:61:0,28,32:0:0:28,32:981,1144:-166.956,-87.132,-78.7032,-79.8094,0,-70.1764	1/1:140:0,140,0:0:0:140,0:4923,0:-443.201,-42.1442,0,-443.201,-42.1442,-443.201	1/2:203:0,132,71:0:0:132,71:4700,2515:-575.016,-192.01,-152.274,-383.347,0,-361.974	1/1:68:0,67,1:0:0:67,1:2383,26:-214.488,-20.169,0,-212.721,-18.1705,-212.42	1/1:73:0,73,0:0:0:73,0:2576,0:-232.076,-21.9752,0,-232.076,-21.9752,-232.076	1/1:65:0,65,0:0:0:65,0:2318,0:-208.861,-19.567,0,-208.861,-19.567,-208.861	1/1:66:0,66,0:0:0:66,0:2327,0:-209.67,-19.868,0,-209.67,-19.868,-209.67	1/1:46:0,46,0:0:0:46,0:1634,0:-147.331,-13.8474,0,-147.331,-13.8474,-147.331	1/1:40:0,40,0:0:0:40,0:1406,0:-126.836,-12.0412,0,-126.836,-12.0412,-126.836	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:22:0,22,0:0:0:22,0:770,0:-69.6188,-6.62266,0,-69.6188,-6.62266,-69.6188	1/1:69:0,69,0:0:0:69,0:2472,0:-222.709,-20.7711,0,-222.709,-20.7711,-222.709	1/1:19:0,18,0:0:0:18,0:631,0:-56.7572,-5.41854,0,-56.7572,-5.41854,-56.7572	1/1:42:0,42,0:0:0:42,0:1483,0:-133.756,-12.6433,0,-133.756,-12.6433,-133.756	1/2:117:0,45,72:0:0:45,72:1578,2570:-321.798,-193.381,-179.835,-128.76,0,-107.086	1/2:116:0,67,49:0:0:67,49:2388,1698:-322.108,-127.435,-107.266,-195.009,0,-180.258	1/2:248:0,122,124:0:0:122,124:4294,4418:-677.118,-327.584,-290.859,-349.626,0,-312.298	1/1:45:0,45,0:0:0:45,0:1584,0:-142.835,-13.5464,0,-142.835,-13.5464,-142.835	1/2:52:0,46,6:0:0:46,6:1639,205:-149.168,-15.5467,-1.6993,-133.941,0,-132.135	1/1:76:0,76,0:0:0:76,0:2720,0:-245.026,-22.8783,0,-245.026,-22.8783,-245.026	1/2:489:0,297,190:0:0:297,190:10520,6749:-1356.35,-499.786,-410.38,-856.68,0,-799.485	1/1:182:0,182,0:0:0:182,0:6409,0:-576.877,-54.7875,0,-576.877,-54.7875,-576.877	1/1:35:0,35,0:0:0:35,0:1244,0:-112.263,-10.5361,0,-112.263,-10.5361,-112.263	1/2:304:0,190,113:0:0:190,113:6804,4015:-852.703,-297.882,-240.687,-554.938,0,-520.921	1/2:222:0,145,77:0:0:145,77:5129,2728:-623.646,-205.932,-162.283,-418.051,0,-394.872	1/1:46:0,41,4:0:0:41,4:1460,143:-131.371,-12.3422,0,-120.664,-1.5917,-119.46	1/2:12:0,9,3:0:0:9,3:324,108:-34.9218,-8.46612,-5.75685,-26.7966,0,-25.8935	1/2:40:0,27,13:0:0:27,13:947,460:-112.123,-35.0893,-26.9615,-77.371,0,-73.4576	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:16:0,9,7:0:0:9,7:324,252:-46.0138,-19.5734,-16.8642,-26.7883,0,-24.6811	1/2:30:0,19,11:0:0:19,11:684,392:-86.1316,-30.3057,-24.5861,-56.1708,0,-52.8594	1/2:284:0,167,115:0:0:167,115:5957,4104:-790.025,-304.412,-254.14,-485.673,0,-451.055	1/2:245:0,134,111:0:0:134,111:4705,3943:-680.014,-297.083,-256.745,-383.27,0,-349.856	1/1:34:0,34,0:0:0:34,0:1207,0:-108.901,-10.235,0,-108.901,-10.235,-108.901	1/2:8:0,3,5:0:0:3,5:93,180:-21.3416,-13.8871,-12.984,-7.77364,0,-6.26849	1/1:104:0,104,0:0:0:104,0:3704,0:-333.537,-31.3071,0,-333.537,-31.3071,-333.537	1/1:33:0,32,0:0:0:32,0:1129,0:-101.646,-9.63296,0,-101.646,-9.63296,-101.646	1/1:102:0,102,0:0:0:102,0:3628,0:-326.714,-30.7051,0,-326.714,-30.7051,-326.714	1/1:40:0,40,0:0:0:40,0:1389,0:-125.284,-12.0412,0,-125.284,-12.0412,-125.284	1/2:62:0,27,35:0:0:27,35:932,1225:-167.997,-92.2716,-84.1438,-76.0619,0,-65.5259	1/2:177:0,108,68:0:0:108,68:3849,2415:-493.071,-179.346,-146.835,-313.781,0,-293.311	1/1:55:0,53,0:0:0:53,0:1896,0:-170.613,-15.9546,0,-170.613,-15.9546,-170.613	1/1:125:0,124,0:0:0:124,0:4397,0:-395.682,-37.3277,0,-395.682,-37.3277,-395.682	1/1:123:0,123,0:0:0:123,0:4392,0:-395.371,-37.0267,0,-395.371,-37.0267,-395.371	1/1:131:0,131,0:0:0:131,0:4658,0:-419.317,-39.4349,0,-419.317,-39.4349,-419.317	1/2:334:0,198,136:0:0:198,136:7016,4774:-925.364,-353.856,-294.252,-571.843,0,-530.903	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:103:0,101,0:0:0:101,0:3612,0:-324.972,-30.404,0,-324.972,-30.404,-324.972	1/1:43:0,42,0:0:0:42,0:1493,0:-134.383,-12.6433,0,-134.383,-12.6433,-134.383	1/2:28:0,19,8:0:0:19,8:663,288:-75.9503,-22.0349,-16.3153,-53.9697,0,-51.5614	1/1:56:0,56,0:0:0:56,0:1988,0:-179.185,-16.8577,0,-179.185,-16.8577,-179.185	1/1:40:0,40,0:0:0:40,0:1427,0:-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chr02	6281272	.	TAAG	CAAA,CAAG	174930	PASS	AB=0.755189,0.2442;ABP=929.526,933.965;AC=161,27;AF=0.856383,0.143617;AN=188;AO=8251,407;CIGAR=1X2M1X,1X3M;DP=8666;DPB=8667;DPRA=0,0.759238;EPP=17919.8,886.8;EPPR=0;GTI=10;LEN=4,1;MEANALT=1.41489,2.06452;MQM=40.033,32.1941;MQMR=0;NS=94;NUMALT=2;ODDS=209.414;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=72,0;PQR=0;PRO=0;QA=286897,12988;QR=0;RO=0;RPL=0,0;RPP=17919.8,886.8;RPPR=0;RPR=8251,407;RUN=1,1;SAF=0,0;SAP=17919.8,886.8;SAR=8251,407;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21,0:0:0:21,0:742,0:-64.494,-6.32163,0,-64.494,-6.32163,-64.494	1/1:151:0,150,0:0:0:150,0:5254,0:-457.712,-45.1545,0,-457.712,-45.1545,-457.712	1/1:137:0,137,0:0:0:137,0:4737,0:-411.686,-41.2411,0,-411.686,-41.2411,-411.686	1/1:306:0,304,1:0:0:304,1:10554,32:-913.481,-91.5131,0,-911.173,-89.2168,-910.872	1/2:89:0,57,32:0:0:57,32:1984,999:-227.154,-71.8964,-54.7377,-155.559,0,-145.926	1/2:51:0,43,8:0:0:43,8:1476,263:-135.874,-19.4368,-6.49251,-116.742,0,-114.333	1/1:132:0,132,0:0:0:132,0:4577,0:-396.739,-39.736,0,-396.739,-39.736,-396.739	1/1:98:0,98,0:0:0:98,0:3423,0:-299.426,-29.5009,0,-299.426,-29.5009,-299.426	1/1:59:0,59,0:0:0:59,0:1997,0:-175.034,-17.7608,0,-175.034,-17.7608,-175.034	1/1:138:0,138,0:0:0:138,0:4751,0:-412.482,-41.5421,0,-412.482,-41.5421,-412.482	1/1:31:0,31,0:0:0:31,0:1098,0:-95.4858,-9.33193,0,-95.4858,-9.33193,-95.4858	1/1:40:0,37,3:0:0:37,3:1268,108:-111.15,-11.1381,0,-102.367,-1.9987,-101.464	1/1:46:0,46,0:0:0:46,0:1600,0:-138.955,-13.8474,0,-138.955,-13.8474,-138.955	1/2:34:0,26,8:0:0:26,8:912,257:-89.4605,-18.8465,-11.0197,-70.9155,0,-68.5073	1/2:22:0,11,11:0:0:11,11:394,352:-56.4583,-25.6797,-22.3684,-31.0956,0,-27.7843	1/2:17:0,13,4:0:0:13,4:452,129:-44.9184,-9.61505,-5.70166,-35.6058,0,-34.4017	1/1:34:0,34,0:0:0:34,0:1178,0:-102.824,-10.235,0,-102.824,-10.235,-102.824	1/2:18:0,15,3:0:0:15,3:538,99:-49.2635,-7.49433,-2.97888,-42.0762,0,-41.1731	1/1:16:0,16,0:0:0:16,0:563,0:-48.0461,-4.81648,0,-48.0461,-4.81648,-48.0461	1/2:178:0,145,32:0:0:145,32:5029,1022:-467.222,-73.6417,-29.9923,-393.548,0,-383.915	1/2:66:0,57,9:0:0:57,9:1982,287:-175.708,-20.9723,-3.81363,-155.031,0,-152.321	1/1:107:0,107,0:0:0:107,0:3713,0:-318.228,-32.2102,0,-318.228,-32.2102,-318.228	1/1:95:0,95,0:0:0:95,0:3296,0:-283.682,-28.5979,0,-283.682,-28.5979,-283.682	1/2:67:0,55,12:0:0:55,12:1913,384:-177.134,-27.9879,-11.4313,-149.444,0,-145.831	1/1:84:0,84,0:0:0:84,0:2953,0:-255.997,-25.2865,0,-255.997,-25.2865,-255.997	1/1:355:0,355,0:0:0:355,0:12446,0:-1071.34,-106.866,0,-1071.34,-106.866,-1071.34	1/1:122:0,122,0:0:0:122,0:4245,0:-368.439,-36.7257,0,-368.439,-36.7257,-368.439	1/1:20:0,20,0:0:0:20,0:700,0:-60.7661,-6.0206,0,-60.7661,-6.0206,-60.7661	1/1:251:0,250,0:0:0:250,0:8665,0:-747.893,-75.2575,0,-747.893,-75.2575,-747.893	1/1:258:0,258,0:0:0:258,0:8978,0:-773.908,-77.6657,0,-773.908,-77.6657,-773.908	1/2:130:0,102,28:0:0:102,28:3536,874:-339.488,-62.9336,-32.2285,-276.848,0,-268.419	1/1:14:0,14,0:0:0:14,0:487,0:-42.9318,-4.21442,0,-42.9318,-4.21442,-42.9318	1/1:23:0,23,0:0:0:23,0:814,0:-70.241,-6.92369,0,-70.241,-6.92369,-70.241	1/1:4:0,4,0:0:0:4,0:144,0:-12.8786,-1.20412,0,-12.8786,-1.20412,-12.8786	1/2:12:0,8,4:0:0:8,4:276,131:-30.9687,-9.84358,-7.43534,-21.4331,0,-20.229	1/1:13:0,13,0:0:0:13,0:467,0:-41.1121,-3.91339,0,-41.1121,-3.91339,-41.1121	1/1:121:0,121,0:0:0:121,0:4262,0:-363.284,-36.4246,0,-363.284,-36.4246,-363.284	1/1:278:0,276,2:0:0:276,2:9592,72:-829.427,-83.0843,0,-823.587,-76.8867,-822.985	1/2:30:0,24,6:0:0:24,6:840,198:-80.5369,-14.6888,-7.46403,-66.1557,0,-64.3495	1/1:2:0,2,0:0:0:2,0:71,0:-6.58276,-0.60206,0,-6.58276,-0.60206,-6.58276	1/1:232:0,232,0:0:0:232,0:8024,0:-693.98,-69.839,0,-693.98,-69.839,-693.98	1/1:20:0,20,0:0:0:20,0:707,0:-61.6947,-6.0206,0,-61.6947,-6.0206,-61.6947	1/1:144:0,144,0:0:0:144,0:4994,0:-433.021,-43.3483,0,-433.021,-43.3483,-433.021	1/1:37:0,37,0:0:0:37,0:1296,0:-112.883,-11.1381,0,-112.883,-11.1381,-112.883	1/2:26:0,20,6:0:0:20,6:676,187:-66.7361,-13.6808,-7.66025,-53.3475,0,-51.5413	1/1:119:0,119,0:0:0:119,0:4113,0:-355.267,-35.8226,0,-355.267,-35.8226,-355.267	1/2:125:0,96,29:0:0:96,29:3310,945:-329.859,-69.1301,-40.2312,-261.035,0,-252.305	1/1:186:0,185,0:0:0:185,0:6470,0:-559.725,-55.6906,0,-559.725,-55.6906,-559.725	1/1:136:0,136,0:0:0:136,0:4735,0:-409.763,-40.9401,0,-409.763,-40.9401,-409.763	1/1:258:0,258,0:0:0:258,0:9008,0:-778.198,-77.6657,0,-778.198,-77.6657,-778.198	1/1:145:0,145,0:0:0:145,0:4985,0:-429.465,-43.6494,0,-429.465,-43.6494,-429.465	1/1:9:0,9,0:0:0:9,0:314,0:-27.3287,-2.70927,0,-27.3287,-2.70927,-27.3287	1/1:142:0,142,0:0:0:142,0:4950,0:-432.141,-42.7463,0,-432.141,-42.7463,-432.141	1/1:116:0,116,0:0:0:116,0:4092,0:-352.686,-34.9195,0,-352.686,-34.9195,-352.686	1/1:21:0,21,0:0:0:21,0:714,0:-62.8004,-6.32163,0,-62.8004,-6.32163,-62.8004	1/2:146:0,117,29:0:0:117,29:4035,895:-378.497,-64.2497,-29.0292,-314.536,0,-305.807	1/1:47:0,47,0:0:0:47,0:1632,0:-140.09,-14.1484,0,-140.09,-14.1484,-140.09	1/2:8:0,6,2:0:0:6,2:197,64:-20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chr02	6281320	.	T	A	1721.91	PASS	AB=0.243072;ABP=996.095;AC=27;AF=0.143617;AN=188;AO=422;CIGAR=1X;DP=9141;DPB=9141;DPRA=0.681447;EPP=919.372;EPPR=18923.1;GTI=14;LEN=1;MEANALT=1;MQM=32.5071;MQMR=40.8345;NS=94;NUMALT=1;ODDS=5.27123;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15039;QR=311861;RO=8717;RPL=422;RPP=919.372;RPPR=18931.7;RPR=0;RUN=1;SAF=0;SAP=919.372;SAR=422;SRF=1;SRP=18923.1;SRR=8716;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:856:0:0:0,-7.22472,-74.627	0/0:161:161,0:161:5761:0:0:0,-48.4658,-501.48	0/0:148:148,0:148:5320:0:0:0,-44.5524,-461.622	0/0:318:317,1:317:11350:1:21:0,-93.6605,-977.019	0/1:92:60,32:60:2156:32:1152:-59.1132,0,-159.108	0/1:51:43,8:43:1548:8:288:-7.45003,0,-119.937	0/0:141:141,0:141:5068:0:0:0,-42.4452,-436.209	0/0:110:110,0:110:3907:0:0:0,-33.1133,-341.695	0/0:61:61,0:61:2184:0:0:0,-18.3628,-189.314	0/0:144:144,0:144:5168:0:0:0,-43.3483,-446.801	0/0:32:32,0:32:1152:0:0:0,-9.63296,-99.9964	0/0:43:43,0:43:1544:0:0:0,-12.9443,-135.644	0/0:47:47,0:47:1684:0:0:0,-14.1484,-146.132	0/1:35:27,8:27:972:8:273:-10.9241,0,-73.1715	0/1:26:15,11:15:540:11:396:-22.7186,0,-39.5383	0/1:18:13,5:13:464:5:180:-9.19614,0,-35.0793	0/0:34:34,0:34:1220:0:0:0,-10.235,-106.829	0/1:23:19,4:19:684:4:144:-4.63377,0,-52.636	0/0:21:20,0:20:716:0:0:0,-6.0206,-62.0748	0/1:186:151,35:151:5417:35:1256:-39.11,0,-412.557	0/1:68:58,10:58:2069:10:345:-6.35241,0,-158.922	0/0:115:115,0:115:4068:0:0:0,-34.6184,-347.702	0/0:97:97,0:97:3457:0:0:0,-29.1999,-296.495	0/1:69:56,13:56:2008:13:468:-15.766,0,-153.106	0/0:89:89,0:89:3192:0:0:0,-26.7917,-276.657	0/0:371:371,0:371:13309:0:0:0,-111.682,-1142.56	0/0:129:129,0:129:4590:0:0:0,-38.8329,-397.559	0/0:21:20,0:20:720:0:0:0,-6.0206,-61.8599	0/0:263:263,0:263:9407:0:0:0,-79.1709,-808.546	0/0:273:273,0:273:9722:0:0:0,-82.1812,-837.317	0/1:135:107,28:107:3836:28:986:-33.8471,0,-291.972	0/0:14:14,0:14:474:0:0:0,-4.21442,-41.7044	0/0:23:23,0:23:824:0:0:0,-6.92369,-70.9159	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.8786	0/1:13:9,4:9:324:4:140:-7.47996,0,-24.0406	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.1829	0/0:126:126,0:126:4536:0:0:0,-37.9298,-385.498	0/0:291:291,0:291:10421:0:0:0,-87.5997,-899.114	0/1:34:28,6:28:1008:6:216:-6.94499,0,-77.83	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.65286	0/0:240:240,0:240:8590:0:0:0,-72.2472,-738.333	0/0:20:20,0:20:716:0:0:0,-6.0206,-62.3254	0/0:150:150,0:150:5362:0:0:0,-45.1545,-463.603	0/0:38:38,0:38:1368:0:0:0,-11.4391,-118.728	0/1:29:23,6:23:824:6:212:-7.6359,0,-63.2113	0/0:128:128,0:128:4566:0:0:0,-38.5318,-392.569	0/1:135:104,31:104:3702:31:1100:-46.568,0,-282.075	0/0:196:196,0:196:7033:0:0:0,-59.0019,-606.632	0/0:139:139,0:139:4966:0:0:0,-41.8432,-427.962	0/0:275:275,0:275:9843:0:0:0,-82.7832,-848.189	0/0:151:151,0:151:5424:0:0:0,-45.4555,-465.114	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.2178	0/0:151:151,0:151:5386:0:0:0,-45.4555,-469.551	0/0:121:121,0:121:4340:0:0:0,-36.4246,-373.657	0/0:21:21,0:21:752:0:0:0,-6.32163,-65.8924	0/1:155:124,31:124:4452:31:1103:-36.1518,0,-337.145	0/0:53:53,0:53:1889:0:0:0,-15.9546,-162.238	0/1:8:6,2:6:216:2:72:-3.39538,0,-16.6254	0/1:11:8,3:8:288:3:108:-4.69292,0,-21.0574	0/0:80:80,0:80:2872:0:0:0,-24.0824,-249.316	0/1:78:48,30:48:1716:30:1080:-59.3555,0,-124.997	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.9997	0/0:307:307,0:307:10979:0:0:0,-92.4162,-942.085	0/1:133:98,35:98:3524:35:1256:-57.8812,0,-263.425	0/0:113:113,0:113:4064:0:0:0,-34.0164,-350.574	0/0:126:126,0:126:4493:0:0:0,-37.9298,-389.112	0/1:123:91,32:91:3241:32:1135:-50.5409,0,-242.942	0/0:157:157,0:157:5621:0:0:0,-47.2617,-485.683	0/0:15:15,0:15:540:0:0:0,-4.51545,-47.111	0/0:70:70,0:70:2500:0:0:0,-21.0721,-215.847	0/1:58:36,22:36:1281:22:780:-42.9038,0,-93.3902	0/0:27:27,0:27:972:0:0:0,-8.12781,-83.1262	0/0:143:143,0:143:5068:0:0:0,-43.0473,-441.44	0/1:32:26,6:26:936:6:212:-7.38441,0,-72.4662	0/0:144:144,0:144:5067:0:0:0,-43.3483,-436.843	0/0:186:186,0:186:6661:0:0:0,-55.9916,-573.472	0/0:174:174,0:174:6214:0:0:0,-52.3792,-541.799	0/0:101:101,0:101:3617:0:0:0,-30.404,-316.471	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.6488	0/0:110:110,0:110:3956:0:0:0,-33.1133,-341.523	0/1:111:82,29:82:2948:29:1044:-48.3457,0,-224.052	0/0:222:222,0:222:7938:0:0:0,-66.8287,-686.514	0/0:72:72,0:72:2547:0:0:0,-21.6742,-219.631	0/0:44:44,0:44:1580:0:0:0,-13.2453,-136.408	0/1:29:25,4:25:900:4:144:-2.57192,0,-69.3852	0/0:85:85,0:85:3044:0:0:0,-25.5875,-261.212	0/1:27:24,3:24:864:3:104:-0.245146,0,-67.5669	0/0:57:57,0:57:2033:0:0:0,-17.1587,-177.02	0/0:41:41,0:41:1476:0:0:0,-12.3422,-128.668	0/0:28:28,0:28:1004:0:0:0,-8.42884,-85.6832	0/1:40:25,15:25:900:15:540:-27.6703,0,-66.0536	0/1:13:5,8:5:180:8:284:-18.2429,0,-11.9773	0/0:212:212,0:212:7564:0:0:0,-63.8184,-655.643	0/0:74:74,0:74:2656:0:0:0,-22.2762,-230.987
chr02	6534700	.	GACG	AACC,GACA	90523.6	PASS	AB=0.367647,0.627005;ABP=230.632,212.61;AC=157,29;AF=0.844086,0.155914;AN=186;AO=3026,948;CIGAR=1X2M1X,3M1X;DP=4004;DPB=4783.5;DPRA=8.69348,1.32928;EPP=6470.07,16.9462;EPPR=5.18177;GTI=7;LEN=4,1;MEANALT=1.63043,2.1875;MQM=59.9537,59.9747;MQMR=60;NS=93;NUMALT=2;ODDS=0.493462;PAIRED=0,0;PAIREDR=0;PAO=3114,1;PQA=71179,35;PQR=35;PRO=1;QA=105774,33575;QR=36;RO=1;RPL=3017,945;RPP=6495.95,2035.59;RPPR=5.18177;RPR=9,3;RUN=1,1;SAF=3,432;SAP=6547.85,19.1727;SAR=3023,516;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,23,0:0:0:23,0:806,0:-72.5413,-6.92369,0,-72.5413,-6.92369,-72.5413	1/1:43:0,43,0:0:0:43,0:1500,0:-134.99,-12.9443,0,-134.99,-12.9443,-134.99	1/1:90:0,89,0:0:0:89,0:3135,0:-282.108,-26.7917,0,-282.108,-26.7917,-282.108	1/1:25:0,24,1:0:0:24,1:856,36:-77.0089,-7.22472,0,-74.0714,-4.2853,-73.7703	1/2:15:0,5,10:0:0:5,10:175,356:-43.2858,-29.0418,-27.5366,-14.2535,0,-11.2432	1/2:23:0,10,12:0:0:10,12:358,428:-64.1644,-34.945,-31.9347,-29.2436,0,-25.6313	1/1:34:0,34,0:0:0:34,0:1173,0:-105.533,-10.235,0,-105.533,-10.235,-105.533	1/1:67:0,67,0:0:0:67,0:2349,0:-211.373,-20.169,0,-211.373,-20.169,-211.373	1/1:36:0,36,0:0:0:36,0:1232,0:-110.878,-10.8371,0,-110.878,-10.8371,-110.878	1/1:23:0,22,0:0:0:22,0:775,0:-69.7668,-6.62266,0,-69.7668,-6.62266,-69.7668	1/1:72:0,71,0:0:0:71,0:2407,0:-216.542,-21.3731,0,-216.542,-21.3731,-216.542	1/1:87:0,86,0:0:0:86,0:2968,0:-267.08,-25.8886,0,-267.08,-25.8886,-267.08	1/1:51:0,50,1:0:0:50,1:1765,36:-158.83,-15.0515,0,-155.892,-12.1125,-155.591	1/2:69:0,40,29:0:0:40,29:1405,1014:-196.868,-82.505,-70.4638,-114.375,0,-105.645	1/2:74:0,19,55:0:0:19,55:672,1936:-212.693,-157.96,-152.241,-55.0862,0,-38.5296	1/2:79:0,39,39:0:0:39,39:1378,1404:-226.837,-114.601,-102.861,-112.262,0,-100.522	1/1:47:0,47,0:0:0:47,0:1636,0:-147.219,-14.1484,0,-147.219,-14.1484,-147.219	1/2:23:0,15,7:0:0:15,7:522,239:-61.8892,-19.4143,-14.8988,-42.483,0,-40.3758	1/1:52:0,52,0:0:0:52,0:1846,0:-166.138,-15.6536,0,-166.138,-15.6536,-166.138	1/2:66:0,13,53:0:0:13,53:465,1890:-192.076,-154.157,-150.244,-37.9863,0,-22.0317	1/2:64:0,31,33:0:0:31,33:1091,1184:-185.423,-96.6012,-87.2692,-88.8368,0,-78.9028	1/1:13:0,13,0:0:0:13,0:437,0:-39.3493,-3.91339,0,-39.3493,-3.91339,-39.3493	1/1:20:0,20,0:0:0:20,0:717,0:-64.8582,-6.0206,0,-64.8582,-6.0206,-64.8582	1/2:12:0,8,3:0:0:8,3:276,108:-31.2408,-8.81558,-6.40734,-22.4261,0,-21.523	1/1:18:0,18,0:0:0:18,0:621,0:-55.8829,-5.41854,0,-55.8829,-5.41854,-55.8829	1/1:38:0,37,1:0:0:37,1:1273,36:-114.557,-11.1381,0,-111.619,-8.19117,-111.318	1/1:57:0,55,0:0:0:55,0:1943,0:-174.81,-16.5567,0,-174.81,-16.5567,-174.81	1/1:24:0,24,0:0:0:24,0:854,0:-76.8524,-7.22472,0,-76.8524,-7.22472,-76.8524	1/1:54:0,54,0:0:0:54,0:1879,0:-169.037,-16.2556,0,-169.037,-16.2556,-169.037	1/1:32:0,32,0:0:0:32,0:1143,0:-102.853,-9.63296,0,-102.853,-9.63296,-102.853	1/2:50:0,15,35:0:0:15,35:519,1244:-143.542,-101.369,-96.8537,-42.163,0,-31.6269	1/1:4:0,4,0:0:0:4,0:144,0:-12.9804,-1.20412,0,-12.9804,-1.20412,-12.9804	1/1:14:0,14,0:0:0:14,0:502,0:-45.2104,-4.21442,0,-45.2104,-4.21442,-45.2104	1/1:3:0,3,0:0:0:3,0:107,0:-9.69674,-0.90309,0,-9.69674,-0.90309,-9.69674	1/2:4:0,1,3:0:0:1,3:36,104:-11.4652,-8.5149,-8.21387,-2.96706,0,-2.06397	1/1:12:0,12,0:0:0:12,0:429,0:-38.6867,-3.61236,0,-38.6867,-3.61236,-38.6867	1/1:117:0,116,0:0:0:116,0:4049,0:-364.311,-34.9195,0,-364.311,-34.9195,-364.311	1/1:16:0,16,0:0:0:16,0:544,0:-48.9475,-4.81648,0,-48.9475,-4.81648,-48.9475	1/2:50:0,29,21:0:0:29,21:998,741:-141.433,-60.3853,-51.6554,-81.0714,0,-74.7498	.:.:.:.:.:.:.:.	1/1:17:0,17,0:0:0:17,0:588,0:-52.9079,-5.11751,0,-52.9079,-5.11751,-52.9079	1/1:33:0,33,0:0:0:33,0:1147,0:-103.206,-9.93399,0,-103.206,-9.93399,-103.206	1/1:43:0,43,0:0:0:43,0:1502,0:-135.136,-12.9443,0,-135.136,-12.9443,-135.136	1/1:43:0,42,0:0:0:42,0:1488,0:-133.897,-12.6433,0,-133.897,-12.6433,-133.897	1/2:79:1,25,53:1:36:25,53:859,1879:-219.581,-150.133,-145.545,-66.7984,0,-53.7818	1/1:24:0,24,0:0:0:24,0:830,0:-74.6556,-7.22472,0,-74.6556,-7.22472,-74.6556	1/2:48:0,19,28:0:0:19,28:674,984:-135.111,-80.1759,-74.4563,-54.9835,0,-46.5546	1/1:47:0,47,0:0:0:47,0:1621,0:-145.744,-14.1484,0,-145.744,-14.1484,-145.744	1/1:23:0,23,0:0:0:23,0:819,0:-73.714,-6.92369,0,-73.714,-6.92369,-73.714	1/1:48:0,48,0:0:0:48,0:1663,0:-149.737,-14.4494,0,-149.737,-14.4494,-149.737	1/1:32:0,31,0:0:0:31,0:1110,0:-99.7452,-9.33193,0,-99.7452,-9.33193,-99.7452	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/1:41:0,41,0:0:0:41,0:1438,0:-129.412,-12.3422,0,-129.412,-12.3422,-129.412	1/1:17:0,17,0:0:0:17,0:577,0:-52.2338,-5.11751,0,-52.2338,-5.11751,-52.2338	1/1:4:0,4,0:0:0:4,0:143,0:-12.9497,-1.20412,0,-12.9497,-1.20412,-12.9497	1/2:40:0,14,26:0:0:14,26:475,931:-114.463,-75.944,-71.7295,-38.5257,0,-30.6989	1/1:2:0,2,0:0:0:2,0:70,0:-6.31506,-0.60206,0,-6.31506,-0.60206,-6.31506	1/2:9:0,1,8:0:0:1,8:36,288:-26.7966,-23.8592,-23.5581,-3.29724,0,-0.889005	1/2:10:0,2,8:0:0:2,8:72,279:-28.9164,-23.0393,-22.4372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chr02	6918918	.	C	T	114174	PASS	AB=0.464863;ABP=168.73;AC=93;AF=0.494681;AN=188;AO=7185;CIGAR=1X;DP=15470;DPB=15470;DPRA=0;EPP=15605;EPPR=17987.1;GTI=1;LEN=1;MEANALT=1.03191;MQM=43.3756;MQMR=59.916;NS=94;NUMALT=1;ODDS=102.588;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257833;QR=296601;RO=8282;RPL=0;RPP=15605;RPPR=17987.1;RPR=7185;RUN=1;SAF=7185;SAP=15605;SAR=0;SRF=8282;SRP=17987.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:100:47,53:47:1671:53:1884:-136.219,0,-120.57	0/1:104:32,72:32:1152:72:2580:-195.459,0,-72.6128	0/1:393:191,202:191:6839:202:7260:-515.875,0,-497.274	0/1:410:185,225:185:6624:225:8080:-585.723,0,-472.817	0/1:105:81,24:81:2896:24:851:-42.0475,0,-229.076	0/1:40:28,12:28:1004:12:428:-25.8656,0,-78.6347	0/1:162:70,92:70:2498:92:3295:-240.083,0,-176.078	0/1:184:86,98:86:3088:98:3501:-252.255,0,-222.758	0/1:144:64,80:64:2295:80:2850:-206.583,0,-163.462	0/1:160:77,83:77:2760:83:2972:-213.754,0,-200.474	0/1:99:45,54:45:1616:54:1936:-139.828,0,-115.928	0/1:194:111,83:111:3963:83:2988:-202.73,0,-298.458	0/1:126:62,64:62:2215:64:2304:-164.46,0,-161.684	0/1:98:67,31:67:2404:31:1116:-68.8155,0,-187.103	0/1:129:103,26:103:3686:26:936:-44.188,0,-293.09	0/1:116:87,29:87:3123:29:1044:-57.0485,0,-246.376	0/1:59:31,28:31:1108:28:1004:-70.5607,0,-82.2702	0/1:42:33,9:33:1180:9:324:-16.3225,0,-93.8484	0/1:57:25,32:25:888:32:1152:-84.2278,0,-63.0803	0/1:570:415,155:415:14854:155:5548:-316.737,0,-1164.93	0/1:209:159,50:159:5698:50:1800:-94.719,0,-449.964	0/1:185:112,73:112:4004:73:2620:-175.117,0,-304.849	0/1:252:110,142:110:3948:142:5069:-368.198,0,-279.651	0/1:126:81,45:81:2903:45:1616:-104.502,0,-223.526	0/1:125:46,79:46:1652:79:2840:-211.373,0,-111.339	0/1:404:174,230:174:6235:230:8268:-603.95,0,-439.628	0/1:449:191,258:191:6852:258:9266:-678.925,0,-481.583	0/1:77:30,47:30:1080:47:1692:-124.847,0,-74.2041	0/1:455:194,261:194:6931:261:9365:-684.056,0,-486.889	0/1:190:86,104:86:3092:104:3744:-273.104,0,-221.311	0/1:144:108,36:108:3872:36:1283:-70.4743,0,-305.326	0/1:14:6,8:6:216:8:288:-21.4637,0,-15.5761	0/1:38:14,24:14:504:24:860:-64.7988,0,-34.259	0/1:5:1,4:1:36:4:144:-10.9926,0,-2.09312	0/0:16:15,1:15:528:1:36:0,-1.28036,-44.3152	0/1:24:11,13:11:387:13:464:-34.1723,0,-27.9412	0/1:392:192,200:192:6896:200:7196:-512.375,0,-502.701	0/1:206:104,102:104:3724:102:3668:-260.608,0,-273.293	0/1:83:62,21:62:2232:21:756:-41.1921,0,-175.913	0/1:6:3,3:3:104:3:108:-8.09496,0,-7.89663	0/1:260:116,143:116:4134:143:5128:-372.059,0,-293.918	0/1:68:30,38:30:1072:38:1368:-100.491,0,-76.3224	0/1:198:113,85:113:4042:85:3047:-207.589,0,-304.363	0/1:127:55,72:55:1976:72:2592:-189.863,0,-139.884	0/1:93:59,34:59:2120:34:1224:-79.0786,0,-163.065	0/1:230:102,128:102:3638:128:4595:-334.85,0,-258.388	0/1:143:115,28:115:4115:28:995:-45.0637,0,-327.473	0/1:244:128,116:128:4591:116:4138:-291.817,0,-339.901	0/1:139:87,52:87:3120:52:1864:-122.036,0,-239.181	0/1:220:98,122:98:3520:122:4361:-317.272,0,-250.782	0/1:311:142,168:142:5071:168:6027:-436.661,0,-362.856	0/1:9:7,2:7:244:2:72:-4.00936,0,-19.5902	0/1:317:174,143:174:6235:143:5136:-356.673,0,-465.817	0/1:147:70,77:70:2508:77:2755:-198.701,0,-181.721	0/1:22:5,17:5:176:17:612:-47.2599,0,-9.56236	0/1:206:151,55:151:5396:55:1971:-112.484,0,-423.76	0/1:89:39,50:39:1375:50:1792:-129.864,0,-97.2562	0/1:15:9,6:9:324:6:212:-14.5872,0,-24.9904	0/1:27:18,9:18:644:9:324:-20.8684,0,-50.1628	0/1:122:62,59:62:2220:59:2124:-150.195,0,-163.28	0/1:197:141,56:141:5072:56:2008:-118.47,0,-397.274	0/1:7:2,5:2:72:5:180:-14.159,0,-4.72951	0/1:339:158,181:158:5664:181:6497:-470.127,0,-407.474	0/1:204:137,67:137:4907:67:2404:-150.079,0,-380.354	0/1:121:40,81:40:1420:81:2912:-220.951,0,-91.6728	0/1:106:67,39:67:2400:39:1400:-91.9669,0,-184.348	0/1:220:150,70:150:5365:70:2516:-155.945,0,-416.738	0/1:299:120,179:120:4287:179:6412:-474.713,0,-296	0/1:67:36,31:36:1287:31:1116:-78.4095,0,-95.9638	0/1:85:36,49:36:1288:49:1760:-129.811,0,-90.636	0/1:69:45,24:45:1620:24:856:-53.6786,0,-125.319	0/1:51:19,32:19:680:32:1152:-83.1702,0,-46.1766	0/1:203:92,111:92:3300:111:3992:-290.055,0,-236.109	0/1:147:98,49:98:3515:49:1756:-110.117,0,-272.282	0/1:205:81,124:81:2904:124:4456:-328.49,0,-199.88	0/1:355:179,176:179:6400:176:6328:-448.583,0,-469.221	0/1:220:141,79:141:5072:79:2829:-183.217,0,-390.36	0/1:220:121,99:121:4340:99:3560:-247.34,0,-324.548	0/1:23:11,12:11:396:12:432:-31.1826,0,-29.0138	0/1:276:156,120:156:5584:120:4304:-295.103,0,-419.599	0/1:185:129,56:129:4628:56:2007:-120.859,0,-360.959	0/1:293:133,160:133:4755:160:5752:-417.507,0,-339.82	0/1:117:60,57:60:2144:57:2048:-143.997,0,-158.007	0/1:122:46,76:46:1644:76:2736:-204.496,0,-111.523	0/1:80:52,28:52:1872:28:1003:-64.2138,0,-144.677	0/1:277:136,141:136:4871:141:5068:-362.655,0,-355.157	0/1:31:23,8:23:828:8:288:-16.4818,0,-65.5122	0/1:162:83,79:83:2980:79:2840:-201.112,0,-219.108	0/1:183:87,96:87:3128:96:3452:-248.846,0,-226.657	0/1:72:37,35:37:1324:35:1252:-89.4685,0,-97.7861	0/1:201:156,45:156:5586:45:1620:-82.3893,0,-442.328	0/1:174:151,23:151:5406:23:828:-20.6648,0,-434.277	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chr02	6918925	.	CGCCT	TGCCA,TGCCT	321437	PASS	AB=0.471557,0.52239;ABP=110.973,69.9104;AC=93,95;AF=0.494681,0.505319;AN=188;AO=7246,8041;CIGAR=1X3M1X,1X4M;DP=15380;DPB=15380;DPRA=0,0;EPP=15366.2,11074.6;EPPR=18.2106;GTI=1;LEN=5,1;MEANALT=2.7766,2.7766;MQM=43.3808,59.933;MQMR=56.5714;NS=94;NUMALT=2;ODDS=105.782;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=252369,287820;QR=245;RO=7;RPL=43,819;RPP=15366.2,11074.6;RPPR=18.2106;RPR=7203,7222;RUN=1,1;SAF=7246,8041;SAP=15737.5,17463.8;SAR=0,0;SRF=7;SRP=18.2106;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:100:0,53,45:0:0:53,45:1851,1612:-278.472,-131.486,-115.532,-146.998,0,-133.452	1/2:105:0,73,32:0:0:73,32:2538,1133:-293.949,-92.6299,-70.6547,-201.668,0,-192.035	1/2:390:0,200,189:0:0:200,189:6965,6750:-1100.49,-550.326,-490.12,-550.154,0,-493.26	1/2:401:2,224,174:2:72:224,174:7789,6227:-1120.08,-501.934,-440.379,-612.886,0,-566.382	1/2:103:0,24,79:0:0:24,79:841,2828:-296.489,-230.973,-223.748,-65.8575,0,-42.0761	1/2:39:0,12,27:0:0:12,27:413,968:-112.094,-79.3096,-75.6972,-33.1276,0,-24.9998	1/2:161:0,93,67:0:0:93,67:3200,2374:-447.374,-193.364,-165.368,-253.997,0,-233.828	1/2:184:0,100,83:0:0:100,83:3493,2976:-520.129,-242.797,-212.694,-277.393,0,-252.408	1/2:141:0,82,59:0:0:82,59:2839,2111:-397.86,-172.498,-147.813,-225.712,0,-207.952	1/2:159:0,82,76:0:0:82,76:2816,2715:-445.274,-221.463,-196.779,-223.907,0,-201.028	1/2:97:0,52,43:0:0:52,43:1789,1536:-267.995,-125.327,-109.673,-142.754,0,-129.809	1/2:191:0,84,106:0:0:84,106:2959,3787:-542.788,-308.827,-283.541,-234.021,0,-202.111	1/2:129:0,68,60:0:0:68,60:2375,2144:-362.708,-174.875,-154.405,-187.891,0,-169.829	1/2:95:0,31,64:0:0:31,64:1093,2287:-273.549,-186.812,-177.48,-87.0849,0,-67.819	1/2:125:0,25,99:0:0:25,99:879,3540:-358.88,-288.629,-281.103,-70.2399,0,-40.4379	1/2:114:0,30,84:0:0:30,84:1032,3001:-327.027,-245.035,-236.004,-82.3342,0,-57.0477	1/2:54:0,26,28:0:0:26,28:910,1004:-154.57,-82.247,-74.4202,-72.6733,0,-64.2444	1/2:42:0,9,33:0:0:9,33:315,1188:-122.457,-97.2783,-94.569,-25.5263,0,-15.5923	1/2:58:0,33,25:0:0:33,25:1152,900:-165.394,-73.7953,-63.8613,-91.9513,0,-84.4256	1/2:563:0,158,404:0:0:158,404:5491,14466:-1616.6,-1179.69,-1132.13,-436.894,0,-315.278	1/2:208:0,49,155:0:0:49,155:1711,5529:-586.4,-450.723,-435.973,-135.685,0,-89.0252	1/2:185:0,75,107:0:0:75,107:2620,3810:-518.861,-310.547,-287.97,-208.328,0,-176.118	1/2:252:0,141,108:0:0:141,108:4891,3872:-702.48,-315.873,-273.428,-386.666,0,-354.155	1/2:121:1,45,74:1:36:45,74:1563,2645:-336.907,-212.722,-202.113,-121.588,0,-102.25	1/2:126:0,79,46:0:0:79,46:2759,1652:-352.929,-134.811,-111.03,-218.161,0,-204.313	1/2:407:0,232,170:0:0:232,170:8065,6053:-1133.65,-493.337,-423.498,-640.303,0,-589.128	1/2:448:0,259,186:0:0:259,186:9040,6659:-1263.21,-543.084,-465.117,-720.168,0,-664.176	1/2:77:0,46,30:0:0:46,30:1590,1071:-212.709,-87.2314,-73.384,-125.516,0,-116.485	1/2:463:0,267,192:0:0:267,192:9283,6896:-1299.91,-562.587,-482.212,-737.366,0,-679.568	1/2:187:0,104,82:0:0:104,82:3648,2944:-531.154,-240.149,-208.842,-290.997,0,-266.313	1/2:144:0,37,107:0:0:37,107:1288,3836:-416.205,-313.226,-302.088,-103.326,0,-71.1162	1/2:14:0,8,6:0:0:8,6:273,216:-39.7462,-17.9843,-15.5761,-22.1114,0,-20.3052	1/2:38:0,24,14:0:0:24,14:842,504:-108.669,-41.4837,-34.259,-67.5393,0,-63.3249	1/2:5:0,4,1:0:0:4,1:143,36:-14.1549,-3.29724,-2.09312,-11.2126,0,-10.9116	2/2:16:0,1,15:0:0:1,15:36,540:-48.5825,-45.7014,-45.4004,-4.51545,-1.28036,0	1/2:24:0,11,10:0:0:11,10:373,360:-59.1575,-29.3774,-26.066,-29.7747,0,-26.7644	1/2:391:0,203,187:0:0:203,187:7098,6705:-1109.81,-546.871,-485.762,-562.927,0,-506.635	1/2:206:0,104,100:0:0:104,100:3621,3592:-580.867,-293.087,-261.78,-287.844,0,-257.741	1/2:82:0,21,61:0:0:21,61:751,2188:-237.911,-178.805,-172.484,-59.4555,0,-41.0927	1/2:5:0,3,2:0:0:3,2:102,72:-14.3837,-6.23466,-5.33157,-8.49927,0,-7.89721	1/2:260:0,145,113:0:0:145,113:5083,4047:-733.4,-330.041,-286.391,-403.351,0,-369.335	1/2:67:0,38,29:0:0:38,29:1325,1044:-191.199,-85.5449,-74.1058,-106.006,0,-97.2765	1/2:196:0,86,110:0:0:86,110:2980,3937:-557.691,-321.407,-295.518,-236.631,0,-203.517	1/2:129:1,74,53:1:36:74,53:2588,1904:-358.302,-152.386,-133.047,-203.272,0,-190.255	1/2:91:0,34,57:0:0:34,57:1211,2052:-263.294,-167.784,-157.549,-95.8609,0,-78.7022	1/2:229:0,129,100:0:0:129,100:4504,3580:-650.441,-292.304,-253.471,-358.487,0,-328.384	1/2:141:2,28,109:2:72:28,109:991,3899:-390.455,-312.047,-309.493,-73.1258,0,-46.1891	1/2:244:0,119,124:0:0:119,124:4060,4448:-686.432,-362.89,-327.068,-323.618,0,-286.29	1/2:139:0,54,85:0:0:54,85:1851,3025:-394.018,-246.89,-230.634,-147.471,0,-121.884	1/2:220:0,124,96:0:0:124,96:4318,3421:-621.759,-279.205,-241.877,-342.904,0,-314.005	1/2:312:0,170,141:0:0:170,141:5915,5052:-882.953,-412.169,-360.993,-470.924,0,-428.479	1/2:7:0,2,5:0:0:2,5:72,180:-20.8081,-15.0469,-14.4449,-6.11657,0,-4.61142	1/2:318:0,146,170:0:0:146,170:5096,6082:-901.728,-496.01,-452.06,-405.771,0,-354.596	1/2:149:0,78,71:0:0:78,71:2729,2544:-425.445,-207.838,-184.357,-217.95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chr02	6918990	.	A	G	4870.91	PASS	AB=0.215016;ABP=2417.7;AC=22;AF=0.117021;AN=188;AO=792;CIGAR=1X;DP=17621;DPB=17621;DPRA=0.90117;EPP=1722.82;EPPR=36509.8;GTI=9;LEN=1;MEANALT=1.03125;MQM=59.9924;MQMR=59.9845;NS=94;NUMALT=1;ODDS=0.0724677;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28034;QR=599117;RO=16824;RPL=0;RPP=1722.82;RPPR=36527.2;RPR=792;RUN=1;SAF=0;SAP=1722.82;SAR=792;SRF=2;SRP=36518.5;SRR=16822;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:82:82,0:82:2888:0:0:0,-24.6845,-260.154	0/0:377:377,0:377:13451:0:0:0,-113.488,-1210.38	0/0:234:234,0:234:8328:0:0:0,-70.441,-749.528	0/0:441:441,0:441:15731:0:0:0,-132.754,-1415.48	0/0:103:101,2:101:3574:2:72:0,-24.1694,-315.028	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:243:243,0:243:8676:0:0:0,-73.1503,-780.833	0/0:364:363,0:363:12876:0:0:0,-109.274,-1158.2	0/0:167:167,0:167:5959:0:0:0,-50.272,-536.415	0/0:276:276,0:276:9807:0:0:0,-83.0843,-882.546	0/0:121:121,0:121:4285:0:0:0,-36.4246,-385.783	0/0:134:134,0:134:4736:0:0:0,-40.338,-426.4	0/0:98:98,0:98:3480:0:0:0,-29.5009,-313.411	0/1:139:101,37:101:3542:37:1296:-75.0366,0,-277.087	0/1:94:58,36:58:2063:36:1283:-87.4758,0,-157.644	0/1:88:66,22:66:2350:22:792:-45.115,0,-185.267	0/0:127:126,1:126:4463:1:32:0,-35.0315,-398.643	0/1:90:70,20:70:2476:20:707:-36.8619,0,-196	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.486	0/0:336:311,25:311:11076:25:864:0,-23.0738,-918.663	0/1:317:271,46:271:9645:46:1622:-50.841,0,-772.577	0/0:204:204,0:204:7274:0:0:0,-61.4101,-654.712	0/0:173:173,0:173:6141:0:0:0,-52.0782,-552.792	0/1:246:180,66:180:6420:66:2350:-137.705,0,-503.835	0/0:81:81,0:81:2882:0:0:0,-24.3834,-259.616	0/0:641:641,0:641:22882:0:0:0,-192.96,-2057.58	0/0:367:367,0:367:13097:0:0:0,-110.478,-1178.54	0/0:73:73,0:73:2579:0:0:0,-21.9752,-232.358	0/0:491:491,0:491:17519:0:0:0,-147.806,-1576.33	0/0:299:299,0:299:10658:0:0:0,-90.008,-959.111	0/1:190:162,28:162:5783:28:966:-30.0515,0,-463.388	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:9:8,1:8:284:1:32:-0.490043,0,-23.1941	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:421:421,0:421:14980:0:0:0,-126.734,-1347.93	0/0:372:372,0:372:13233:0:0:0,-111.983,-1190.77	0/1:102:73,29:73:2581:29:1016:-61.0461,0,-201.834	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:287:287,0:287:10265:0:0:0,-86.3956,-923.775	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/0:281:281,0:281:10032:0:0:0,-84.5894,-902.366	0/0:168:168,0:168:5964:0:0:0,-50.573,-536.868	0/1:157:115,42:115:4072:42:1488:-86.9528,0,-319.404	0/0:148:148,0:148:5295:0:0:0,-44.5524,-476.685	0/0:186:175,11:175:6240:11:396:0,-20.0088,-525.713	0/0:347:345,2:345:12337:2:72:0,-97.6207,-1103.33	0/0:221:220,0:220:7842:0:0:0,-66.2266,-705.449	0/0:389:389,0:389:13850:0:0:0,-117.101,-1246.28	0/0:335:335,0:335:11953:0:0:0,-100.845,-1075.63	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:220:220,0:220:7850:0:0:0,-66.2266,-706.525	0/0:125:124,1:124:4394:1:36:0,-34.0305,-392.033	0/0:24:24,0:24:839:0:0:0,-7.22472,-75.8273	0/1:211:178,33:178:6312:33:1184:-43.351,0,-504.655	0/0:88:88,0:88:3137:0:0:0,-26.4906,-282.555	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/1:24:16,8:16:576:8:288:-19.0427,0,-44.9503	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:272:206,66:206:7347:66:2340:-128.977,0,-579.399	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:590:589,0:589:21054:0:0:0,-177.307,-1894.06	0/1:341:296,45:296:10580:45:1580:-39.8365,0,-849.464	0/0:211:211,0:211:7477:0:0:0,-63.5173,-672.975	0/0:163:163,0:163:5802:0:0:0,-49.0679,-522.291	0/1:285:254,31:254:9053:31:1104:-13.8771,0,-728.957	0/0:192:192,0:192:6820:0:0:0,-57.7978,-613.873	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:178:178,0:178:6311:0:0:0,-53.5833,-568.084	0/1:197:157,40:157:5560:40:1424:-69.1546,0,-441.223	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:203:203,0:203:7248:0:0:0,-61.1091,-652.373	0/1:141:95,46:95:3381:46:1644:-105.803,0,-262.06	0/0:338:338,0:338:12049:0:0:0,-101.748,-1084.26	0/0:342:342,0:342:12204:0:0:0,-102.952,-1098.21	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.743	0/0:311:310,1:310:11063:1:32:0,-90.421,-992.363	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:240:240,0:240:8570:0:0:0,-72.2472,-771.107	0/0:140:130,10:130:4628:10:360:0,-9.3999,-383.939	0/0:378:377,0:377:13428:0:0:0,-113.488,-1207.96	0/0:172:171,1:171:6073:1:36:0,-48.1789,-543.075	0/0:125:125,0:125:4460:0:0:0,-37.6287,-401.572	0/1:174:136,38:136:4830:38:1339:-68.43,0,-382.476	0/0:324:322,2:322:11413:2:72:0,-90.697,-1020.22	0/1:83:68,15:68:2440:15:525:-22.5934,0,-194.869	0/0:153:153,0:153:5390:0:0:0,-46.0576,-485.235	0/0:130:130,0:130:4596:0:0:0,-39.1339,-413.808	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/1:130:90,40:90:3212:40:1419:-88.8727,0,-250.17	0/1:124:78,46:78:2767:46:1627:-109.39,0,-211.945	0/0:273:273,0:273:9713:0:0:0,-82.1812,-874.121	0/0:193:193,0:193:6871:0:0:0,-58.0988,-618.458
chr02	6919006	.	A	G	200223	PASS	AB=0.494324;ABP=7.98977;AC=94;AF=0.5;AN=188;AO=8796;CIGAR=1X;DP=17794;DPB=17794;DPRA=0;EPP=1118.83;EPPR=58.6371;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9678;MQMR=59.9946;NS=94;NUMALT=1;ODDS=118.93;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=314674;QR=322090;RO=8994;RPL=3336;RPP=1116.74;RPPR=59.1016;RPR=5460;RUN=1;SAF=1;SAP=19094.6;SAR=8795;SRF=1;SRP=19524.5;SRR=8993;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:84:57,27:57:2036:27:961:-61.5193,0,-158.226	0/1:378:131,247:131:4681:247:8826:-680.535,0,-307.661	0/1:237:110,127:110:3912:127:4541:-337.511,0,-280.929	0/1:449:185,264:185:6629:264:9460:-716.181,0,-461.524	0/1:102:82,20:82:2948:20:716:-34.0627,0,-234.848	0/1:17:15,2:15:540:2:72:-1.71921,0,-43.819	0/1:246:116,130:116:4160:130:4667:-346.136,0,-300.529	0/1:366:183,183:183:6515:183:6542:-478.578,0,-476.258	0/1:168:81,87:81:2912:87:3132:-231.53,0,-211.741	0/1:281:114,167:114:4092:167:5957:-451.648,0,-283.805	0/1:123:55,68:55:1972:68:2432:-182.064,0,-140.728	0/1:131:64,67:64:2296:67:2391:-176.013,0,-167.466	0/1:97:50,47:50:1792:47:1692:-123.367,0,-132.363	0/1:140:103,37:103:3686:37:1328:-77.678,0,-289.797	0/1:97:78,19:78:2800:19:666:-31.0637,0,-223.04	0/1:90:69,21:69:2476:21:756:-41.2745,0,-196.001	0/1:127:63,64:63:2232:64:2268:-166.15,0,-162.911	0/1:91:63,28:63:2251:28:995:-62.4703,0,-175.459	0/1:65:36,29:36:1292:29:1040:-74.3474,0,-97.0168	0/1:332:209,123:209:7466:123:4397:-295.961,0,-572.04	0/1:319:209,110:209:7469:110:3905:-255.61,0,-576.225	0/1:203:111,92:111:3966:92:3304:-236.469,0,-296.021	0/1:173:71,102:71:2548:102:3664:-277.884,0,-177.492	0/1:251:192,59:192:6832:59:2124:-115.865,0,-539.39	0/1:83:37,46:37:1328:46:1644:-123.263,0,-94.8367	0/1:651:300,351:300:10761:351:12541:-931.904,0,-772.419	0/1:368:160,208:160:5719:208:7448:-559.583,0,-404.049	0/1:76:48,28:48:1724:28:986:-66.1739,0,-132.567	0/1:489:254,235:254:9104:235:8441:-612.483,0,-672.127	0/1:302:141,161:141:5049:161:5728:-424.723,0,-363.642	0/1:194:110,84:110:3940:84:3016:-213.271,0,-296.39	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:426:218,208:218:7840:208:7471:-544.191,0,-577.384	0/1:370:164,206:164:5860:206:7352:-550.348,0,-416.132	0/1:104:80,24:80:2852:24:858:-46.2345,0,-225.609	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:293:110,183:110:3944:183:6533:-499.849,0,-266.95	0/1:34:18,16:18:635:16:576:-41.94,0,-47.2419	0/1:281:146,135:146:5221:135:4807:-347.903,0,-385.438	0/1:173:80,93:80:2876:93:3323:-247.21,0,-206.998	0/1:156:119,37:119:4263:37:1317:-71.8692,0,-336.887	0/1:152:77,75:77:2764:75:2687:-196.128,0,-203.245	0/1:187:121,66:121:4328:66:2368:-157.085,0,-333.404	0/1:342:150,192:150:5377:192:6871:-515.505,0,-381.107	0/1:221:115,106:115:4128:106:3796:-275.31,0,-305.175	0/1:386:139,247:139:4992:247:8840:-679.381,0,-333.228	0/1:336:182,154:182:6489:154:5531:-396.766,0,-482.948	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:226:101,125:101:3624:125:4496:-336.774,0,-258.332	0/1:125:37,88:37:1324:88:3168:-247.714,0,-81.8333	0/1:25:5,20:5:176:20:716:-57.242,0,-8.65927	0/1:211:136,75:136:4857:75:2673:-177.297,0,-373.766	0/1:90:53,37:53:1904:37:1313:-91.3779,0,-144.545	0/1:8:7,1:7:252:1:32:-0.791073,0,-20.6207	0/1:25:22,3:22:788:3:108:-2.54942,0,-63.719	0/1:66:36,30:36:1288:30:1076:-77.2849,0,-96.3556	0/1:276:205,71:205:7332:71:2548:-146.486,0,-576.843	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/1:596:229,367:229:8208:367:13152:-1004.06,0,-559.317	0/1:342:218,124:218:7817:124:4443:-297.088,0,-600.603	0/1:215:77,138:77:2753:138:4932:-379.306,0,-183.289	0/1:162:52,110:52:1860:110:3927:-304.856,0,-118.913	0/1:291:188,101:188:6748:101:3624:-239.046,0,-520.074	0/1:194:69,123:69:2461:123:4401:-338.104,0,-163.585	0/1:33:17,16:17:612:16:576:-42.241,0,-45.4794	0/1:181:78,103:78:2800:103:3677:-276.646,0,-197.753	0/1:201:151,50:151:5424:50:1784:-100.332,0,-427.78	0/1:56:23,33:23:828:33:1184:-90.0106,0,-57.9864	0/1:207:92,115:92:3292:115:4115:-308.221,0,-234.186	0/1:143:105,38:105:3772:38:1360:-79.6533,0,-296.631	0/1:340:162,178:162:5812:178:6370:-471.039,0,-420.842	0/1:341:111,230:111:3972:230:8246:-639.496,0,-255.02	0/1:86:40,46:40:1440:46:1640:-122,0,-104.009	0/1:310:114,196:114:4077:196:7040:-540.339,0,-273.795	0/1:15:5,10:5:180:10:351:-27.4112,0,-12.0366	0/1:240:89,151:89:3196:151:5396:-413.522,0,-215.426	0/1:140:97,43:97:3484:43:1522:-95.1274,0,-271.626	0/1:387:183,204:183:6556:204:7236:-534.796,0,-473.623	0/1:180:77,103:77:2742:103:3667:-276.049,0,-192.837	0/1:127:56,71:56:2016:71:2547:-191.249,0,-143.482	0/1:175:118,57:118:4244:57:2039:-131.101,0,-329.457	0/1:335:167,168:167:6000:168:6027:-441.687,0,-439.258	0/1:83:56,27:56:2008:27:960:-61.7308,0,-156.008	0/1:157:65,92:65:2332:92:3297:-249.686,0,-162.878	0/1:129:62,67:62:2212:67:2399:-177.333,0,-160.512	0/1:67:29,38:29:1044:38:1345:-101.179,0,-74.1058	0/1:131:102,29:102:3656:29:1044:-54.8399,0,-289.809	0/1:125:103,22:103:37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chr02	6919008	.	T	C	5005.83	PASS	AB=0.211438;ABP=2506.92;AC=22;AF=0.117021;AN=188;AO=789;CIGAR=1X;DP=17780;DPB=17780;DPRA=0.97892;EPP=1656.04;EPPR=34619.9;GTI=7;LEN=1;MEANALT=1;MQM=60;MQMR=59.9784;NS=94;NUMALT=1;ODDS=4.47504;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28251;QR=608194;RO=16989;RPL=782;RPP=1656.04;RPPR=34636.7;RPR=7;RUN=1;SAF=0;SAP=1716.3;SAR=789;SRF=2;SRP=36876.8;SRR=16987;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/0:373:373,0:373:13334:0:0:0,-112.284,-1199.86	0/0:236:236,0:236:8441:0:0:0,-71.0431,-759.689	0/0:447:447,0:447:16007:0:0:0,-134.56,-1439.11	0/0:103:101,2:101:3628:2:72:0,-24.1694,-319.887	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:247:247,0:247:8828:0:0:0,-74.3544,-794.509	0/0:367:367,0:367:13117:0:0:0,-110.478,-1180.23	0/0:164:164,0:164:5864:0:0:0,-49.3689,-527.871	0/0:285:285,0:285:10189:0:0:0,-85.7935,-916.783	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.772	0/0:136:136,0:136:4856:0:0:0,-40.9401,-437.195	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/1:138:99,39:99:3541:39:1388:-83.6768,0,-277.355	0/1:94:59,35:59:2120:35:1260:-85.4087,0,-162.772	0/1:90:69,21:69:2480:21:752:-40.9136,0,-196.36	0/0:129:129,0:129:4601:0:0:0,-38.8329,-414.254	0/1:91:72,19:72:2584:19:684:-34.4966,0,-205.415	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/0:332:307,25:307:10967:25:896:0,-18.9816,-905.964	0/1:318:271,47:271:9728:47:1680:-55.7596,0,-779.737	0/0:207:207,0:207:7401:0:0:0,-62.3132,-666.136	0/0:172:172,0:172:6148:0:0:0,-51.7772,-553.421	0/1:253:188,65:188:6748:65:2336:-134.339,0,-531.226	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:650:648,0:648:23218:0:0:0,-195.067,-2087.42	0/0:371:371,0:371:13308:0:0:0,-111.682,-1197.51	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/0:494:494,0:494:17712:0:0:0,-148.709,-1593.69	0/0:295:295,0:295:10545:0:0:0,-88.8038,-948.953	0/1:197:170,27:170:6061:27:964:-27.7739,0,-486.291	0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9347	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:9:8,1:8:288:1:32:-0.490043,0,-23.5581	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:422:421,1:421:15073:1:36:0,-123.436,-1352.69	0/0:376:376,0:376:13461:0:0:0,-113.187,-1211.28	0/1:105:77,28:77:2768:28:1000:-58.7072,0,-217.753	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:291:291,0:291:10433:0:0:0,-87.5997,-938.885	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:279:279,0:279:9993:0:0:0,-83.9874,-898.733	0/0:169:169,0:169:6064:0:0:0,-50.8741,-545.861	0/1:160:118,42:118:4244:42:1512:-88.2098,0,-333.972	0/0:150:150,0:150:5388:0:0:0,-45.1545,-484.859	0/0:187:176,11:176:6309:11:396:0,-20.3099,-531.917	0/0:348:348,0:348:12436:0:0:0,-104.758,-1119.08	0/0:222:222,0:222:7971:0:0:0,-66.8287,-717.408	0/0:389:388,1:388:13924:1:36:0,-113.502,-1249.32	0/0:331:331,0:331:11857:0:0:0,-99.6409,-1066.99	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:227:227,0:227:8132:0:0:0,-68.3338,-731.895	0/0:124:122,2:122:4364:2:72:0,-30.491,-386.098	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:211:178,33:178:6373:33:1163:-41.458,0,-510.14	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/1:25:17,8:17:600:8:288:-18.7417,0,-46.8034	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:277:211,66:211:7560:66:2376:-130.712,0,-597.054	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:593:593,0:593:21222:0:0:0,-178.511,-1909.43	0/1:342:293,49:293:10485:49:1755:-55.281,0,-840.613	0/0:215:215,0:215:7677:0:0:0,-64.7214,-690.963	0/0:159:159,0:159:5695:0:0:0,-47.8638,-512.667	0/1:291:260,31:260:9312:31:1092:-10.9893,0,-750.446	0/0:196:196,0:196:7021:0:0:0,-59.0019,-631.95	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:176:176,0:176:6324:0:0:0,-52.9813,-569.249	0/1:196:157,39:157:5598:39:1404:-67.6574,0,-444.939	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:203:203,0:203:7284:0:0:0,-61.1091,-655.609	0/1:143:97,46:97:3468:46:1645:-105.29,0,-269.285	0/0:347:347,0:347:12375:0:0:0,-104.457,-1113.58	0/0:341:341,0:341:12220:0:0:0,-102.651,-1099.64	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.948	0/0:310:309,1:309:11062:1:36:0,-89.721,-991.87	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:241:241,0:241:8668:0:0:0,-72.5482,-780.107	0/0:146:136,10:136:4864:10:360:0,-11.2061,-405.169	0/0:391:391,0:391:13937:0:0:0,-117.703,-1254.08	0/0:172:170,2:170:6076:2:72:0,-44.9404,-540.107	0/0:126:126,0:126:4532:0:0:0,-37.9298,-408.045	0/1:173:137,36:137:4908:36:1288:-64.1454,0,-389.793	0/0:321:319,2:319:11389:2:72:0,-89.7939,-1018.06	0/1:84:69,15:69:2480:15:536:-23.2883,0,-198.167	0/0:156:156,0:156:5591:0:0:0,-46.9607,-503.311	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:131:94,37:94:3376:37:1328:-80.3873,0,-264.62	0/1:126:79,47:79:2809:47:1684:-113.917,0,-215.119	0/0:290:290,0:290:10350:0:0:0,-87.2987,-931.419	0/0:196:196,0:196:7036:0:0:0,-59.0019,-633.299
chr02	6919020	.	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chr02	7458823	.	G	A	39473.8	PASS	AB=0.477068;ABP=25.319;AC=51;AF=0.271277;AN=188;AO=2349;CIGAR=1X;DP=9537;DPB=9537;DPRA=1.18687;EPP=4965.77;EPPR=13758.6;GTI=0;LEN=1;MEANALT=1.04918;MQM=59.9762;MQMR=59.9698;NS=94;NUMALT=1;ODDS=7.77488;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84166;QR=256768;RO=7184;RPL=16;RPP=4965.77;RPPR=13766.8;RPR=2333;RUN=1;SAF=2349;SAP=5103.8;SAR=0;SRF=7183;SRP=15594.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:38,35:38:1356:35:1256:-91.3701,0,-100.365	0/0:110:107,2:107:3814:2:72:0,-26.3354,-336.512	0/0:460:459,1:459:16395:1:36:0,-134.876,-1471.51	0/1:217:93,124:93:3324:124:4436:-334.088,0,-234.055	0/1:38:18,20:18:644:20:716:-53.3286,0,-46.8515	0/1:21:5,16:5:180:16:576:-45.8534,0,-10.2304	0/1:87:42,45:42:1476:45:1605:-118.549,0,-106.942	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/1:168:91,77:91:3219:77:2752:-197.29,0,-239.356	0/1:110:62,48:62:2224:48:1724:-122.332,0,-167.311	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.622	0/1:120:57,63:57:2023:63:2259:-167.441,0,-146.219	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:62:32,30:32:1125:30:1080:-78.8494,0,-82.8922	0/0:31:30,1:30:1080:1:36:0,-5.73365,-93.915	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:180:92,87:92:3289:87:3105:-225.432,0,-241.984	0/1:163:93,70:93:3344:70:2508:-176.904,0,-252.108	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/1:167:71,96:71:2496:96:3452:-260.619,0,-174.615	0/0:124:119,5:119:4257:5:180:0,-20.7803,-365.398	0/1:71:46,24:46:1648:24:852:-55.5687,0,-127.177	0/0:334:334,0:334:11861:0:0:0,-100.544,-1067.14	0/1:271:147,124:147:5238:124:4422:-316.571,0,-389.977	0/1:39:16,23:16:572:23:828:-63.1039,0,-40.0733	0/0:254:253,1:253:9050:1:36:0,-72.8633,-810.876	0/1:123:75,48:75:2696:48:1724:-118.419,0,-205.857	0/0:131:131,0:131:4669:0:0:0,-39.4349,-420.369	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/1:29:14,15:14:500:15:536:-39.8449,0,-36.6063	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:35:18,17:18:644:17:612:-44.8774,0,-47.7545	0/0:220:220,0:220:7860:0:0:0,-66.2266,-707.427	0/1:75:44,31:44:1580:31:1116:-78.1698,0,-119.914	0/1:59:27,32:27:964:32:1141:-85.2374,0,-69.3161	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:99:97,2:97:3472:2:72:0,-22.9652,-305.855	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:118:67,51:67:2378:51:1808:-127.477,0,-178.753	0/1:59:31,28:31:1092:28:1008:-73.2756,0,-80.8261	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:95:43,52:43:1525:52:1857:-138.811,0,-108.937	0/0:113:113,0:113:4048:0:0:0,-34.0164,-364.507	0/0:171:171,0:171:6127:0:0:0,-51.4761,-551.522	0/1:143:87,56:87:3112:56:2003:-137.496,0,-237.26	0/1:126:57,69:57:2040:69:2480:-185.523,0,-145.942	0/1:213:104,109:104:3697:109:3916:-288.512,0,-268.813	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:215:156,59:156:5573:59:2105:-124.996,0,-436.971	0/1:43:26,17:26:936:17:612:-42.4691,0,-71.6152	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:156:154,2:154:5498:2:72:0,-40.124,-488.108	0/1:63:40,23:40:1436:23:812:-54.4355,0,-110.573	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:93:53,40:53:1892:40:1436:-101.542,0,-142.562	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.865	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:206:105,101:105:3726:101:3616:-263.634,0,-273.528	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/1:70:19,51:19:684:51:1832:-144.084,0,-40.8182	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:189:123,66:123:4412:66:2372:-156.843,0,-340.357	0/0:193:191,2:191:6818:2:72:0,-51.2621,-606.696	0/1:52:21,31:21:756:31:1116:-85.0981,0,-52.7137	0/1:64:35,29:35:1241:29:1044:-75.0089,0,-92.7266	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:97:97,0:97:3456:0:0:0,-29.1999,-311.254	0/0:160:160,0:160:5721:0:0:0,-48.1648,-515.006	0/0:192:191,0:191:6827:0:0:0,-57.4967,-614.132	0/0:160:160,0:160:5733:0:0:0,-48.1648,-516.084	0/1:114:64,50:64:2304:50:1792:-127.245,0,-173.303	0/1:105:62,43:62:2220:43:1540:-107.285,0,-168.456	0/1:20:9,11:9:324:11:392:-29.5995,0,-23.4853	0/1:83:42,41:42:1503:41:1476:-108.151,0,-110.578	0/1:82:46,36:46:1656:36:1296:-92.2595,0,-124.644	0/0:202:202,0:202:7256:0:0:0,-60.8081,-653.083	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/1:136:55,81:55:1972:81:2897:-220.024,0,-136.815	0/1:38:15,23:15:540:23:828:-63.405,0,-37.4974	0/1:91:54,37:54:1944:37:1332:-92.7887,0,-147.842	0/1:75:44,31:44:1580:31:1112:-77.8141,0,-119.914	0/1:34:24,10:24:864:10:356:-22.1462,0,-67.8475	0/1:87:34,53:34:1209:53:1900:-145.088,0,-82.9245	0/1:108:29,79:29:1044:79:2836:-222.967,0,-61.7636	0/0:132:131,1:131:4664:1:36:0,-36.1377,-416.322	0/0:108:106,2:106:3808:2:72:0,-25.6745,-336.08
chr02	7606219	.	TCCT	TCCA	92302.9	PASS	AB=0.479592;ABP=13.6461;AC=133;AF=0.715054;AN=186;AO=4386;CIGAR=3M1X;DP=5945;DPB=5947.5;DPRA=32.2989;EPP=9518.4;EPPR=3305.83;GTI=2;LEN=1;MEANALT=1.33696;MQM=59.9622;MQMR=59.9731;NS=93;NUMALT=1;ODDS=0.960035;PAIRED=0;PAIREDR=0;PAO=5;PQA=180;PQR=0;PRO=0;QA=157175;QR=53803;RO=1525;RPL=0;RPP=9527.09;RPPR=3314.51;RPR=4386;RUN=1;SAF=4385;SAP=9518.4;SAR=1;SRF=1524;SRP=3305.83;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:286:6:216:-15.5761,0,-21.8711	1/1:97:0,97:0:0:97:3431:-309.001,-29.1999,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	0/1:151:70,80:70:2478:80:2861:-212.201,0,-177.749	0/1:36:18,18:18:644:18:648:-47.8148,0,-47.4535	0/1:36:19,17:19:683:17:608:-44.2149,0,-50.963	0/1:71:21,48:21:749:48:1701:-132.272,0,-46.6327	1/1:95:0,95:0:0:95:3412:-307.234,-28.5979,0	0/1:57:31,26:31:1105:26:932:-67.0402,0,-82.6022	0/1:63:46,17:46:1586:17:608:-36.0871,0,-124.06	1/1:41:0,40:0:0:40:1436:-129.285,-12.0412,0	0/1:70:35,34:35:1226:34:1224:-89.4137,0,-89.5896	1/1:61:0,60:0:0:60:2156:-193.947,-18.0618,0	1/1:54:0,54:0:0:54:1944:-175.172,-16.2556,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:36:14,22:14:496:22:792:-60.7686,0,-34.1369	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:73:0,73:0:0:73:2628:-236.761,-21.9752,0	0/1:32:21,11:21:748:11:396:-26.3498,0,-58.0123	0/1:50:25,25:25:886:25:896:-65.9089,0,-65.0067	0/1:58:28,29:28:986:29:1044:-76.8411,0,-71.6185	1/1:28:0,24:0:0:24:864:-77.7227,-7.22472,0	0/1:73:38,34:38:1357:34:1208:-86.9917,0,-100.397	1/1:106:4,102:4:144:102:3651:-315.408,-18.5956,0	0/1:25:13,12:13:459:12:428:-31.3331,0,-34.119	1/1:218:1,216:1:34:216:7752:-694.239,-62.3348,0	0/1:148:80,67:80:2820:67:2404:-172.148,0,-209.578	0/1:35:13,22:13:466:22:792:-61.0696,0,-31.7427	1/1:107:0,107:0:0:107:3833:-345.164,-32.2102,0	0/1:96:44,52:44:1547:52:1845:-137.37,0,-110.563	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	1/1:2:0,1:0:0:1:36:-3.27338,-0.30103,0	0/1:6:2,4:2:71:4:138:-10.9536,0,-4.93588	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:160:0,160:0:0:160:5752:-517.781,-48.1648,0	0/1:33:15,18:15:531:18:648:-48.7179,0,-38.1887	0/1:45:21,24:21:747:24:860:-64.1755,0,-54.0087	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:78:0,77:0:0:77:2760:-248.282,-23.1793,0	1/1:27:0,27:0:0:27:972:-87.7933,-8.12781,0	0/1:96:46,50:46:1609:50:1796:-133.023,0,-116.174	0/1:86:40,44:40:1413:44:1572:-116.125,0,-101.821	1/1:73:0,73:0:0:73:2613:-235.414,-21.9752,0	0/1:50:28,22:28:985:22:788:-56.1933,0,-73.9112	1/1:59:1,58:1:29:58:2072:-183.851,-14.8611,0	1/1:180:1,178:1:36:178:6392:-571.768,-50.6459,0	0/1:90:53,37:53:1847:37:1328:-92.7295,0,-139.415	0/1:143:62,80:62:2177:80:2872:-215.758,0,-153.236	0/1:79:44,35:44:1561:35:1256:-89.5639,0,-116.999	0/1:12:7,5:7:247:5:180:-12.9397,0,-18.9608	0/1:83:42,40:42:1505:40:1432:-104.133,0,-110.701	0/1:39:22,17:22:774:17:608:-43.3119,0,-58.2412	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:73:0,73:0:0:73:2620:-235.917,-21.9752,0	0/1:20:16,4:16:555:4:144:-7.29302,0,-44.2552	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:51:26,24:26:908:24:860:-62.3588,0,-66.649	1/1:76:0,76:0:0:76:2725:-245.479,-22.8783,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:88:27,60:27:951:60:2152:-167.506,0,-59.462	1/1:110:0,109:0:0:109:3901:-351.011,-32.8123,0	0/1:35:18,17:18:635:17:593:-43.1587,0,-46.9416	1/1:53:0,53:0:0:53:1873:-168.847,-15.9546,0	0/1:143:69,73:69:2431:73:2628:-193.633,0,-175.999	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:8:4,4:4:133:4:144:-10.9054,0,-9.88935	0/1:35:23,12:23:819:12:432:-28.6851,0,-63.4958	1/1:81:0,81:0:0:81:2916:-262.674,-24.3834,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:40:0,40:0:0:40:1440:-129.869,-12.0412,0	1/1:82:0,81:0:0:81:2904:-261.227,-24.3834,0	1/1:105:0,102:0:0:102:3652:-328.566,-30.7051,0	1/1:79:1,78:1:35:78:2784:-247.303,-20.2827,0	0/1:66:39,27:39:1376:27:972:-67.9299,0,-104.271	0/1:107:63,44:63:2200:44:1572:-109.561,0,-166.054	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:78:42,36:42:1465:36:1281:-92.1109,0,-108.661	0/1:27:18,9:18:630:9:324:-21.378,0,-48.8976	1/1:155:0,155:0:0:155:5537:-498.454,-46.6597,0	1/1:79:0,77:0:0:77:2764:-248.641,-23.1793,0	1/1:46:0,45:0:0:45:1616:-145.37,-13.5464,0	1/1:69:0,69:0:0:69:2476:-223.034,-20.7711,0	0/1:127:70,57:70:2473:57:2044:-146.001,0,-184.59	0/1:38:14,24:14:499:24:856:-65.922,0,-33.8068	0/1:66:30,36:30:1062:36:1292:-96.6924,0,-76.0233	0/1:53:35,17:35:1253:17:612:-39.4,0,-97.0623	0/1:28:16,12:16:563:12:428:-30.43,0,-42.5707	0/1:59:32,27:32:1134:27:968:-69.6766,0,-84.6073	0/1:68:48,20:48:1693:20:720:-44.6587,0,-132.185	1/1:62:0,61:0:0:61:2180:-196.106,-18.3628,0	1/1:103:0,103:0:0:103:3704:-333.499,-31.0061,0
chr02	7690261	.	A	G	103329	PASS	AB=0.458487;ABP=63.7671;AC=136;AF=0.723404;AN=188;AO=5287;CIGAR=1X;DP=7502;DPB=7502;DPRA=0;EPP=11483.6;EPPR=4806.31;GTI=0;LEN=1;MEANALT=1.03191;MQM=41.7725;MQMR=44.0339;NS=94;NUMALT=1;ODDS=3.92043;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188903;QR=77819;RO=2212;RPL=0;RPP=11483.6;RPPR=4806.31;RPR=5287;RUN=1;SAF=5287;SAP=11483.6;SAR=0;SRF=2212;SRP=4806.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:23,20:23:798:20:705:-47.0684,0,-55.7781	1/1:99:0,99:0:0:99:3533:-299.666,-29.802,0	1/1:141:2,139:2:72:139:4969:-412.904,-35.8319,0	0/1:140:72,68:72:2516:68:2440:-171.799,0,-182.127	0/1:58:18,40:18:603:40:1436:-107.454,0,-36.0649	0/1:79:38,41:38:1310:41:1442:-99.1213,0,-91.0296	0/1:124:72,52:72:2547:52:1852:-126.012,0,-189.435	1/1:108:3,105:3:108:105:3760:-306.918,-22.7653,0	0/1:72:45,27:45:1571:27:966:-59.4759,0,-115.636	0/1:81:41,40:41:1453:40:1428:-101.422,0,-105.221	1/1:48:0,48:0:0:48:1690:-148.1,-14.4494,0	0/1:47:22,25:22:788:25:900:-61.1935,0,-54.0893	1/1:43:0,43:0:0:43:1544:-130.842,-12.9443,0	1/1:54:0,54:0:0:54:1936:-168.707,-16.2556,0	1/1:43:0,43:0:0:43:1548:-136.595,-12.9443,0	0/1:40:20,20:20:701:20:720:-50.6629,0,-50.0071	1/1:40:0,39:0:0:39:1396:-118.231,-11.7402,0	1/1:22:0,22:0:0:22:792:-67.1251,-6.62266,0	0/1:41:14,27:14:504:27:972:-69.406,0,-31.8291	0/1:155:74,81:74:2611:81:2912:-208.011,0,-185.838	0/1:144:77,67:77:2727:67:2389:-164.482,0,-197.033	1/1:140:0,140:0:0:140:5011:-442.143,-42.1442,0	0/1:56:28,28:28:1004:28:1008:-72.0294,0,-72.7358	1/1:130:7,123:7:252:123:4362:-356.997,-16.6363,0	0/1:89:56,33:56:1925:33:1188:-77.0834,0,-142.731	1/1:203:0,202:0:0:202:7249:-638.671,-60.8081,0	0/1:188:115,73:115:4007:73:2624:-170.583,0,-296.14	0/1:38:19,19:19:669:19:665:-46.8743,0,-47.8639	1/1:199:0,199:0:0:199:7125:-631.23,-59.905,0	0/1:124:63,61:63:2200:61:2176:-150.761,0,-156.322	1/1:76:0,76:0:0:76:2732:-240.338,-22.8783,0	1/1:20:0,20:0:0:20:716:-61.4006,-6.0206,0	0/1:17:12,5:12:432:5:180:-10.8937,0,-33.3317	1/1:8:0,8:0:0:8:288:-24.7295,-2.40824,0	1/1:6:0,6:0:0:6:216:-18.6318,-1.80618,0	0/1:21:4,17:4:140:17:612:-45.3342,0,-6.24969	1/1:155:0,154:0:0:154:5520:-488.58,-46.3586,0	0/1:235:124,111:124:4392:111:3958:-272.752,0,-308.457	0/1:44:29,15:29:1036:15:540:-33.017,0,-77.2264	0/1:7:2,5:2:72:5:180:-13.904,0,-4.58271	1/1:151:0,151:0:0:151:5390:-468.966,-45.4555,0	1/1:30:0,30:0:0:30:1076:-92.8547,-9.0309,0	0/1:117:77,40:77:2670:40:1440:-89.5165,0,-199.885	0/1:42:24,18:24:864:18:644:-44.4913,0,-64.5963	1/1:41:0,41:0:0:41:1476:-130.39,-12.3422,0	0/1:101:53,48:53:1885:48:1694:-118.353,0,-138.261	1/1:83:0,83:0:0:83:2969:-250.862,-24.9855,0	1/1:105:1,104:1:36:104:3672:-319.994,-28.0871,0	0/1:93:41,52:41:1438:52:1845:-133.957,0,-100.234	0/1:138:65,73:65:2325:73:2585:-186.139,0,-165.469	0/1:238:139,99:139:4962:99:3525:-239.011,0,-370.445	0/1:11:7,4:7:243:4:144:-9.51107,0,-18.5178	0/1:106:59,47:59:2063:47:1684:-110.392,0,-148.186	0/1:23:16,7:16:576:7:237:-14.3215,0,-44.8777	1/1:11:0,11:0:0:11:392:-33.4927,-3.31133,0	1/1:123:0,123:0:0:123:4412:-381.6,-37.0267,0	0/1:53:37,16:37:1316:16:568:-34.4581,0,-101.027	1/1:13:0,13:0:0:13:468:-41.8475,-3.91339,0	0/1:18:7,11:7:252:11:396:-30.0416,0,-17.4741	0/1:66:38,28:38:1334:28:1004:-68.1223,0,-97.9385	1/1:92:0,92:0:0:92:3270:-288.17,-27.6948,0	0/1:5:4,1:4:144:1:36:-2.01586,0,-11.5922	0/1:170:73,97:73:2586:97:3473:-256.981,0,-179.538	1/1:181:0,181:0:0:181:6473:-567.842,-54.4864,0	0/1:45:26,19:26:921:19:676:-45.2852,0,-67.8211	1/1:66:0,66:0:0:66:2349:-206.679,-19.868,0	0/1:149:79,70:79:2802:70:2475:-173.134,0,-204.843	1/1:80:1,79:1:36:79:2828:-243.202,-20.5238,0	0/1:13:10,3:10:352:3:108:-5.83256,0,-27.4665	0/1:89:54,35:54:1883:35:1245:-78.0891,0,-136.83	1/1:49:0,49:0:0:49:1764:-156.52,-14.7505,0	1/1:13:0,13:0:0:13:468:-41.4143,-3.91339,0	1/1:119:0,119:0:0:119:4231:-357.248,-35.8226,0	1/1:56:0,56:0:0:56:2008:-170.281,-16.8577,0	1/1:103:0,103:0:0:103:3674:-318.994,-31.0061,0	1/1:160:0,160:0:0:160:5717:-502.488,-48.1648,0	0/1:117:77,40:77:2669:40:1421:-85.6753,0,-197.106	0/1:32:21,11:21:752:11:392:-23.6395,0,-56.2647	0/1:5:3,2:3:108:2:72:-4.93129,0,-8.2408	0/1:67:46,21:46:1622:21:752:-44.3217,0,-123.134	0/1:91:45,46:45:1537:46:1646:-111.876,0,-106.747	1/1:118:0,118:0:0:118:4232:-372.569,-35.5215,0	1/1:88:0,88:0:0:88:3152:-273.033,-26.4906,0	1/1:27:0,27:0:0:27:972:-85.9126,-8.12781,0	1/1:59:0,59:0:0:59:2093:-184.171,-17.7608,0	0/1:130:64,66:64:2243:66:2331:-166.676,0,-160.616	0/1:23:13,10:13:460:10:360:-23.8229,0,-33.5455	0/1:67:37,30:37:1313:30:1080:-71.1535,0,-94.1992	0/1:50:22,28:22:788:28:1008:-69.6657,0,-53.8297	0/1:16:9,7:9:279:7:239:-16.3563,0,-20.2371	0/1:83:44,39:44:1569:39:1404:-97.0529,0,-113.465	0/1:58:40,18:40:1353:18:644:-39.455,0,-102.735	1/1:85:0,85:0:0:85:3041:-266.197,-25.5876,0	1/1:55:0,55:0:0:55:1968:-173.634,-16.5567,0
chr02	8931302	.	TA	CA	69713.2	PASS	AB=0.490581;ABP=4.89189;AC=134;AF=0.728261;AN=184;AO=3442;CIGAR=1X1M;DP=4696;DPB=4696;DPRA=0;EPP=7468.53;EPPR=2706.49;GTI=0;LEN=1;MEANALT=1.06522;MQM=45.889;MQMR=59.0048;NS=92;NUMALT=1;ODDS=3.85604;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122378;QR=43938;RO=1245;RPL=0;RPP=7477.22;RPPR=2706.49;RPR=3442;RUN=1;SAF=1;SAP=7468.53;SAR=3441;SRF=0;SRP=2706.49;SRR=1245;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:3,4:3:101:4:135:-10.1454,0,-7.31449	1/1:34:0,34:0:0:34:1207:-106.123,-10.235,0	1/1:35:0,35:0:0:35:1247:-109.951,-10.5361,0	0/1:135:78,57:78:2770:57:2029:-139.955,0,-208.759	0/1:7:3,4:3:108:4:144:-11.0223,0,-7.96796	0/1:14:3,11:3:108:11:396:-30.9957,0,-5.85793	0/1:26:14,12:14:490:12:432:-31.0349,0,-36.6046	1/1:42:0,42:0:0:42:1498:-132.029,-12.6433,0	0/1:22:8,14:8:281:14:482:-35.3777,0,-18.8093	0/1:79:46,33:46:1631:33:1179:-81.7065,0,-122.72	1/1:34:0,34:0:0:34:1209:-107.457,-10.235,0	0/1:51:21,29:21:750:29:1044:-76.7159,0,-52.2657	1/1:51:0,51:0:0:51:1812:-159.808,-15.3525,0	1/1:44:0,44:0:0:44:1568:-139.517,-13.2453,0	1/1:43:0,43:0:0:43:1548:-138.285,-12.9443,0	0/1:55:28,27:28:992:27:964:-68.6705,0,-73.0086	1/1:14:0,14:0:0:14:487:-43.2593,-4.21442,0	1/1:11:0,11:0:0:11:388:-34.0427,-3.31133,0	0/1:9:4,5:4:144:5:176:-13.1615,0,-10.6006	0/1:75:29,46:29:1038:46:1633:-122.712,0,-71.1547	0/1:134:76,58:76:2653:58:2041:-140.06,0,-198.27	1/1:18:0,18:0:0:18:648:-58.3743,-5.41854,0	0/1:64:31,33:31:1096:33:1182:-86.2262,0,-79.659	1/1:13:0,13:0:0:13:464:-41.5369,-3.91339,0	0/1:16:11,5:11:385:5:180:-11.2519,0,-30.1677	1/1:156:1,155:1:34:155:5524:-490.412,-43.5618,0	0/1:169:75,94:75:2669:94:3356:-246.572,0,-189.36	0/1:18:13,5:13:451:5:180:-10.9046,0,-35.5012	1/1:152:0,152:0:0:152:5435:-486.37,-45.7566,0	0/1:49:24,25:24:831:25:896:-65.062,0,-60.266	1/1:37:0,35:0:0:35:1225:-109.216,-10.5361,0	1/1:2:0,2:0:0:2:68:-6.39093,-0.60206,0	0/1:4:3,1:3:108:1:36:-2.3444,0,-8.87105	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	0/1:11:7,4:7:241:4:140:-9.38878,0,-18.5992	1/1:160:0,160:0:0:160:5691:-509.107,-48.1648,0	0/1:54:30,24:30:1066:24:851:-59.3369,0,-79.9941	0/1:20:12,8:12:428:8:288:-19.6828,0,-32.8272	.:.:.:.:.:.:.:.	1/1:41:1,40:1:36:40:1423:-122.534,-8.74396,0	1/1:15:0,15:0:0:15:536:-47.671,-4.51545,0	0/1:40:17,23:17:610:23:804:-58.6875,0,-43.1626	0/1:29:16,13:16:570:13:468:-33.3585,0,-42.9029	1/1:32:0,32:0:0:32:1135:-101.607,-9.63296,0	0/1:29:20,9:20:670:9:316:-19.9407,0,-51.8803	1/1:27:0,27:0:0:27:951:-83.5798,-8.12781,0	1/1:112:0,112:0:0:112:3967:-351.45,-33.7154,0	0/1:74:42,32:42:1502:32:1131:-78.4461,0,-113.072	0/1:63:30,33:30:1055:33:1154:-84.315,0,-76.2807	0/1:65:31,34:31:1090:34:1200:-88.2528,0,-78.581	0/1:9:2,7:2:72:7:246:-19.3429,0,-4.12745	0/1:69:29,40:29:996:40:1436:-105.981,0,-69.1526	0/1:29:18,11:18:622:11:381:-25.4789,0,-47.5353	1/1:6:0,6:0:0:6:216:-19.3286,-1.80618,0	1/1:97:0,97:0:0:97:3449:-305.396,-29.1999,0	0/1:14:10,4:10:358:4:144:-8.96586,0,-28.2615	1/1:2:0,2:0:0:2:72:-6.80779,-0.60206,0	0/1:11:7,4:7:252:4:144:-9.94595,0,-19.7176	0/1:42:31,11:31:1081:11:388:-22.1696,0,-84.8468	1/1:74:0,70:0:0:70:2488:-221.451,-21.0721,0	1/1:6:0,6:0:0:6:216:-19.6007,-1.80618,0	0/1:221:112,108:112:3961:108:3830:-275.181,0,-290.144	1/1:97:0,97:0:0:97:3470:-308.752,-29.1999,0	0/1:44:18,26:18:635:26:924:-69.1422,0,-44.1002	1/1:29:0,29:0:0:29:1034:-92.3242,-8.72987,0	0/1:88:32,56:32:1139:56:1989:-151.011,0,-76.3273	1/1:72:0,72:0:0:72:2555:-227.238,-21.6742,0	0/1:24:11,13:11:389:13:441:-32.3246,0,-28.1233	0/1:33:22,11:22:777:11:396:-25.2761,0,-60.1935	1/1:32:0,32:0:0:32:1144:-102.318,-9.63296,0	1/1:24:0,24:0:0:24:860:-77.0394,-7.22472,0	1/1:43:0,43:0:0:43:1508:-133.285,-12.9443,0	1/1:70:0,70:0:0:70:2487:-219.196,-21.0721,0	1/1:80:0,80:0:0:80:2837:-251.195,-24.0824,0	1/1:102:0,101:0:0:101:3555:-316.107,-30.404,0	0/1:14:7,7:7:237:7:244:-17.1829,0,-17.4408	0/1:99:44,55:44:1578:55:1955:-142.571,0,-112.469	0/1:8:4,4:4:142:4:144:-10.6195,0,-10.7176	0/1:80:34,46:34:1162:46:1648:-122.489,0,-80.0176	0/1:40:23,17:23:807:17:599:-41.0389,0,-60.5941	1/1:157:0,157:0:0:157:5625:-500.173,-47.2617,0	1/1:43:0,43:0:0:43:1535:-137.23,-12.9443,0	1/1:35:0,35:0:0:35:1250:-111.386,-10.5361,0	1/1:20:0,20:0:0:20:716:-64.1571,-6.0206,0	0/1:87:52,35:52:1839:35:1239:-84.544,0,-139.599	0/1:17:6,11:6:214:11:387:-28.7534,0,-14.4851	0/1:56:25,31:25:896:31:1100:-79.9309,0,-64.0759	0/1:37:20,17:20:700:17:603:-42.3319,0,-52.1682	0/1:9:7,2:7:248:2:68:-3.68166,0,-19.9551	0/1:53:26,27:26:923:27:947:-68.1546,0,-67.4323	0/1:39:27,12:27:966:12:432:-27.1048,0,-75.4888	1/1:119:0,119:0:0:119:4234:-376.689,-35.8226,0	1/1:72:1,71:1:36:71:2538:-222.868,-18.0759,0
chr02	8956958	.	T	C	127137	PASS	AB=0.491748;ABP=4.94551;AC=135;AF=0.718085;AN=188;AO=4752;CIGAR=1X;DP=6437;DPB=6437;DPRA=34.5968;EPP=10.265;EPPR=11.2727;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.9937;MQMR=60;NS=94;NUMALT=1;ODDS=6.0813;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168980;QR=60294;RO=1682;RPL=11;RPP=10226.5;RPPR=3612.13;RPR=4741;RUN=1;SAF=2322;SAP=8.34028;SAR=2430;SRF=806;SRP=9.33623;SRR=876;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:21,22:21:756:22:765:-56.2234,0,-55.4229	1/1:53:0,53:0:0:53:1873:-168.848,-15.9546,0	1/1:75:0,75:0:0:75:2671:-240.636,-22.5773,0	0/1:103:51,52:51:1823:52:1833:-134.24,0,-133.344	0/1:37:16,21:16:576:21:735:-55.3333,0,-41.0369	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:63:34,29:34:1211:29:1040:-74.9495,0,-90.3306	1/1:105:2,103:2:72:103:3653:-322.136,-24.7714,0	0/1:62:26,36:26:936:36:1265:-95.4862,0,-65.8956	0/1:56:20,36:20:716:36:1284:-99.0057,0,-47.91	1/1:95:1,94:1:36:94:3333:-296.59,-24.9996,0	0/1:167:74,93:74:2656:93:3286:-245.688,0,-189.014	1/1:112:0,112:0:0:112:4005:-360.638,-33.7154,0	1/1:83:0,83:0:0:83:2963:-266.903,-24.9855,0	1/1:101:0,101:0:0:101:3603:-324.477,-30.404,0	0/1:88:32,56:32:1148:56:1991:-152.973,0,-77.1392	1/1:65:0,65:0:0:65:2311:-208.25,-19.567,0	1/1:47:0,47:0:0:47:1658:-149.506,-14.1484,0	0/1:53:27,26:27:972:26:901:-65.4476,0,-71.8433	0/1:93:41,52:41:1468:52:1836:-137.523,0,-104.42	0/1:100:71,29:71:2533:29:1028:-62.73,0,-198.117	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:49:23,26:23:828:26:928:-69.0878,0,-60.0936	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	0/1:51:35,16:35:1256:16:557:-35.103,0,-97.9928	1/1:107:0,107:0:0:107:3826:-344.537,-32.2102,0	0/1:126:63,63:63:2249:63:2249:-164.742,0,-164.742	0/1:58:21,37:21:752:37:1300:-99.8387,0,-50.5465	1/1:121:0,119:0:0:119:4251:-382.409,-35.8226,0	0/1:47:23,24:23:824:24:850:-62.6714,0,-60.3349	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:266:0,265:0:0:265:9423:-847.679,-79.773,0	0/1:32:16,16:16:576:16:572:-42.1805,0,-42.542	0/1:68:42,26:42:1512:26:932:-63.7288,0,-115.905	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:95:4,91:4:144:91:3201:-274.999,-15.2842,0	1/1:38:0,38:0:0:38:1353:-122.069,-11.4391,0	0/1:103:45,58:45:1616:58:2064:-155.022,0,-114.724	0/1:98:45,53:45:1607:53:1899:-141.686,0,-115.418	1/1:105:0,105:0:0:105:3748:-337.519,-31.6082,0	0/1:40:22,18:22:792:18:644:-46.2494,0,-59.5645	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	1/1:63:1,62:1:36:62:2191:-193.856,-15.3666,0	0/1:41:19,22:19:680:22:765:-56.8255,0,-49.1869	0/1:71:36,35:36:1277:35:1236:-90.1692,0,-93.858	0/1:71:41,30:41:1459:30:1063:-74.6069,0,-110.232	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:51:26,25:26:936:25:880:-64.1652,0,-69.2069	0/1:24:16,8:16:568:8:288:-19.0427,0,-44.2271	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:69:0,69:0:0:69:2460:-221.655,-20.7711,0	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5887	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:46:24,22:24:864:22:780:-56.6757,0,-64.2352	1/1:139:2,137:2:72:137:4878:-432.335,-35.0064,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:62:31,31:31:1112:31:1103:-80.9159,0,-81.7275	1/1:105:1,104:1:36:104:3715:-330.953,-28.0099,0	0/1:36:13,23:13:468:23:824:-63.6462,0,-31.6226	1/1:37:0,37:0:0:37:1328:-119.752,-11.1381,0	0/1:87:35,52:35:1256:52:1814:-137.348,0,-87.1557	1/1:87:5,82:5:180:82:2897:-244.415,-9.63755,0	0/1:46:27,19:27:968:19:684:-48.0429,0,-73.59	0/1:40:25,15:25:892:15:540:-36.8953,0,-68.5585	1/1:73:0,73:0:0:73:2608:-234.967,-21.9752,0	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	1/1:47:0,47:0:0:47:1669:-150.496,-14.1484,0	1/1:74:0,74:0:0:74:2641:-237.936,-22.2762,0	1/1:65:0,65:0:0:65:2318:-208.879,-19.567,0	1/1:93:0,93:0:0:93:3306:-297.759,-27.9958,0	0/1:42:21,21:21:748:21:748:-55.002,0,-55.002	0/1:101:53,48:53:1904:48:1716:-124.322,0,-141.234	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:76:49,27:49:1760:27:972:-64.9196,0,-135.806	0/1:67:39,28:39:1404:28:1008:-70.8673,0,-106.49	1/1:106:0,106:0:0:106:3787:-341.029,-31.9092,0	1/1:99:0,99:0:0:99:3515:-316.562,-29.802,0	1/1:109:0,109:0:0:109:3857:-347.328,-32.8123,0	1/1:89:0,89:0:0:89:3165:-285.074,-26.7917,0	0/1:236:106,130:106:3808:130:4627:-345.551,0,-271.873	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	0/1:97:50,47:50:1791:47:1675:-121.837,0,-132.272	0/1:125:66,59:66:2360:59:2120:-153.44,0,-175.03	0/1:45:26,19:26:936:19:664:-46.5363,0,-71.0131	0/1:135:66,69:66:2368:69:2468:-181.735,0,-172.739	0/1:107:70,37:70:2512:37:1324:-87.2519,0,-194.122	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:224:1,223:1:36:223:7904:-707.793,-63.8324,0
chr02	9607835	.	T	G	16394.4	PASS	AB=0.367261;ABP=475.146;AC=29;AF=0.154255;AN=188;AO=1142;CIGAR=1X;DP=13848;DPB=13848;DPRA=0.71309;EPP=2465.49;EPPR=26757.4;GTI=10;LEN=1;MEANALT=1.09091;MQM=59.9965;MQMR=59.9895;NS=94;NUMALT=1;ODDS=1.58642;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40806;QR=455175;RO=12698;RPL=1140;RPP=2465.49;RPPR=26757.4;RPR=2;RUN=1;SAF=0;SAP=2482.83;SAR=1142;SRF=0;SRP=27576.4;SRR=12698;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:245:245,0:245:8781:0:0:0,-73.7523,-790.275	0/0:165:165,0:165:5904:0:0:0,-49.6699,-531.467	0/0:351:351,0:351:12563:0:0:0,-105.662,-1130.49	0/1:88:70,18:70:2485:18:648:-32.1612,0,-197.412	0/1:51:42,9:42:1504:9:320:-13.7898,0,-120.302	0/0:221:220,1:220:7881:1:36:0,-62.9294,-705.715	0/0:258:258,0:258:9237:0:0:0,-77.6657,-831.289	0/0:140:140,0:140:5009:0:0:0,-42.1442,-450.942	0/0:188:188,0:188:6740:0:0:0,-56.5936,-606.673	0/0:114:114,0:114:4065:0:0:0,-34.3174,-366.037	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.786	0/1:59:49,10:49:1752:10:356:-14.6205,0,-140.203	0/1:118:63,55:63:2268:55:1980:-142.953,0,-168.858	0/1:43:38,5:38:1364:5:180:-3.60778,0,-110.116	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.728	0/1:52:44,8:44:1584:8:270:-8.9741,0,-127.198	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:351:194,157:194:6964:157:5602:-398.642,0,-521.161	0/1:162:126,36:126:4501:36:1275:-66.2854,0,-356.487	0/0:99:99,0:99:3549:0:0:0,-29.802,-319.616	0/0:139:139,0:139:4980:0:0:0,-41.8432,-448.348	0/1:91:82,9:82:2948:9:320:-1.74863,0,-238.159	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:579:579,0:579:20675:0:0:0,-174.296,-1860.23	0/0:384:384,0:384:13730:0:0:0,-115.596,-1235.48	0/0:52:51,0:51:1832:0:0:0,-15.3525,-164.801	0/0:414:413,0:413:14829:0:0:0,-124.325,-1333.97	0/0:153:153,0:153:5485:0:0:0,-46.0576,-493.774	0/1:222:100,121:100:3592:121:4323:-322.359,0,-256.598	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:396:396,0:396:14213:0:0:0,-119.208,-1278.92	0/0:260:260,0:260:9316:0:0:0,-78.2678,-838.4	0/1:64:49,15:49:1756:15:536:-29.3089,0,-139.058	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:222:222,0:222:7968:0:0:0,-66.8287,-717.132	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:138:138,0:138:4960:0:0:0,-41.5421,-446.547	0/1:122:62,60:62:2220:60:2139:-156.052,0,-163.339	0/0:202:202,0:202:7256:0:0:0,-60.8081,-653.089	0/1:97:84,13:84:3005:13:464:-12.8976,0,-241.48	0/0:333:333,0:333:11914:0:0:0,-100.243,-1072.06	0/0:164:164,0:164:5892:0:0:0,-49.3689,-530.383	0/0:218:218,0:218:7809:0:0:0,-65.6245,-702.837	0/0:136:136,0:136:4881:0:0:0,-40.9401,-439.439	0/0:15:14,1:14:504:1:36:0,-0.917175,-42.0998	0/0:218:218,0:218:7836:0:0:0,-65.6245,-705.264	0/0:85:84,1:84:3005:1:36:0,-21.9893,-267.081	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:149:117,32:117:4173:32:1126:-56.7931,0,-330.898	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.5925	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:151:74,77:74:2645:77:2763:-203.455,0,-192.839	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:311:311,0:311:11172:0:0:0,-93.6203,-1005.36	0/1:362:203,159:203:7281:159:5703:-404.413,0,-546.365	0/0:93:90,3:90:3228:3:108:0,-17.9206,-280.665	0/0:185:185,0:185:6614:0:0:0,-55.6905,-595.337	0/1:256:131,125:131:4688:125:4476:-325.946,0,-345.017	0/0:172:172,0:172:6149:0:0:0,-51.7772,-553.508	0/0:58:57,0:57:2052:0:0:0,-17.1587,-184.592	0/0:135:135,0:135:4852:0:0:0,-40.639,-436.832	0/1:123:72,51:72:2576:51:1832:-128.134,0,-195.063	0/0:35:34,0:34:1216:0:0:0,-10.235,-109.387	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:67:52,15:52:1864:15:536:-28.4058,0,-147.87	0/0:369:369,0:369:13207:0:0:0,-111.08,-1188.43	0/0:257:257,0:257:9190:0:0:0,-77.3647,-827.069	0/0:247:247,0:247:8868:0:0:0,-74.3544,-798.083	0/0:216:216,0:216:7748:0:0:0,-65.0225,-697.35	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:211:210,0:210:7540:0:0:0,-63.2163,-678.427	0/1:91:64,26:64:2304:26:936:-57.1454,0,-180.207	0/0:355:352,2:352:12625:2:72:0,-99.9878,-1129.21	0/0:162:162,0:162:5824:0:0:0,-48.7669,-524.269	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/1:103:60,43:60:2156:43:1524:-106.442,0,-163.167	0/0:221:221,0:221:7940:0:0:0,-66.5276,-714.62	0/1:47:38,9:38:1364:9:324:-15.3574,0,-108.912	0/0:129:129,0:129:4640:0:0:0,-38.8329,-417.76	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.87	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.482	0/1:85:69,16:69:2464:16:558:-24.9589,0,-196.427	0/1:105:49,56:49:1760:56:2007:-149.294,0,-127.076	0/0:159:159,0:159:5697:0:0:0,-47.8638,-512.846	0/0:156:156,0:156:5596:0:0:0,-46.9607,-503.761
chr02	9616235	.	A	G	8307.52	PASS	AB=0.422648;ABP=68.1822;AC=33;AF=0.175532;AN=188;AO=549;CIGAR=1X;DP=4689;DPB=4689;DPRA=0.816549;EPP=1195.15;EPPR=8979.88;GTI=5;LEN=1;MEANALT=1;MQM=59.8652;MQMR=59.9113;NS=94;NUMALT=1;ODDS=0.876752;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=19616;QR=147266;RO=4138;RPL=0;RPP=1195.15;RPPR=8988.56;RPR=549;RUN=1;SAF=549;SAP=1195.15;SAR=0;SRF=4137;SRP=8979.88;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/0:68:68,0:68:2402:0:0:0,-20.47,-216.434	0/0:72:72,0:72:2516:0:0:0,-21.6742,-226.686	0/1:45:30,15:30:1080:15:540:-35.3902,0,-83.9669	0/1:43:34,9:34:1220:9:324:-16.5616,0,-97.1625	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:59:59,0:59:2089:0:0:0,-17.7608,-188.261	0/0:117:117,0:117:4181:0:0:0,-35.2205,-376.45	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.509	0/0:34:34,0:34:1208:0:0:0,-10.235,-108.988	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.845	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:48:20,28:20:720:28:1004:-76.2264,0,-50.6793	0/1:75:47,28:47:1669:28:989:-66.7448,0,-127.918	0/1:67:31,36:31:1093:36:1296:-96.7734,0,-78.5087	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:45:28,17:28:1004:17:596:-40.4195,0,-77.1295	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:30:20,10:20:705:10:356:-23.3503,0,-54.7419	0/1:48:32,16:32:1129:16:576:-36.7834,0,-87.4669	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7392	0/0:57:57,0:57:1961:0:0:0,-17.1587,-176.757	0/1:35:25,10:25:896:10:345:-20.8448,0,-70.4243	0/0:60:60,0:60:2130:0:0:0,-18.0618,-191.951	0/0:111:111,0:111:3882:0:0:0,-33.4143,-349.572	0/0:118:118,0:118:4221:0:0:0,-35.5215,-380.069	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:67:67,0:67:2359:0:0:0,-20.169,-212.564	0/0:56:56,0:56:1970:0:0:0,-16.8577,-177.553	0/1:42:29,13:29:1044:13:460:-29.0921,0,-81.4737	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:124:124,0:124:4447:0:0:0,-37.3277,-400.33	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/1:54:28,26:28:1008:26:928:-67.5826,0,-74.7807	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:73:73,0:73:2556:0:0:0,-21.9752,-230.285	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:54:28,26:28:1004:26:936:-68.3038,0,-74.4193	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.985	0/1:66:35,31:35:1230:31:1104:-79.8027,0,-91.132	0/0:59:59,0:59:2070:0:0:0,-17.7608,-186.568	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.003	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.162	0/0:45:45,0:45:1571:0:0:0,-13.5463,-141.672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3052	0/1:43:21,22:21:756:22:788:-58.3005,0,-55.4229	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.374	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/1:74:40,34:40:1440:34:1224:-88.1908,0,-107.622	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:43:43,0:43:1506:0:0:0,-12.9443,-135.804	0/1:66:44,22:44:1576:22:792:-51.7377,0,-122.219	0/0:33:31,2:31:1116:2:72:0,-3.09727,-93.9088	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.223	0/1:60:49,11:49:1722:11:392:-17.5583,0,-137.196	0/0:60:60,0:60:2107:0:0:0,-18.0618,-189.894	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:41:40,1:40:1432:1:36:0,-8.74395,-125.579	0/1:52:26,26:26:932:26:917:-67.191,0,-68.5453	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.358	0/1:63:39,24:39:1381:24:856:-58.3668,0,-105.622	0/0:96:94,0:94:3368:0:0:0,-28.2968,-302.996	0/0:74:74,0:74:2626:0:0:0,-22.2762,-236.584	0/0:64:64,0:64:2269:0:0:0,-19.2659,-204.201	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.177	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:128:128,0:128:4580:0:0:0,-38.5318,-412.354	0/0:47:47,0:47:1643:0:0:0,-14.1484,-148.152	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.395	0/1:42:23,19:23:824:19:684:-49.2389,0,-61.8401	0/0:109:109,0:109:3870:0:0:0,-32.8123,-348.494	0/1:24:19,5:19:676:5:180:-9.32734,0,-53.9433	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.702	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:82:33,49:33:1180:49:1756:-133.635,0,-81.8236	0/1:71:28,43:28:985:43:1529:-116.523,0,-67.5875	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.947
chr02	9673307	.	G	A	21207.1	PASS	AB=0.472738;ABP=35.3326;AC=87;AF=0.462766;AN=188;AO=2492;CIGAR=1X;DP=5659;DPB=5659;DPRA=1.83317;EPP=5396.96;EPPR=6825.88;GTI=20;LEN=1;MEANALT=1.01075;MQM=27.059;MQMR=29.7928;NS=94;NUMALT=1;ODDS=0.172222;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89366;QR=112851;RO=3166;RPL=2;RPP=5396.96;RPPR=5739.42;RPR=2490;RUN=1;SAF=0;SAP=5414.32;SAR=2492;SRF=3025;SRP=5707.72;SRR=141;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:18,23:18:648:23:828:-40.5439,0,-26.4937	0/1:90:64,26:64:2296:26:932:-32.225,0,-124.734	0/1:119:40,79:40:1415:79:2825:-144.769,0,-55.6367	0/1:130:44,86:44:1580:86:3080:-163.86,0,-76.5932	0/1:28:12,16:12:428:16:572:-30.8505,0,-23.1068	0/1:18:12,6:12:432:6:216:-8.65435,0,-22.9187	0/1:51:37,14:37:1332:14:500:-18.2233,0,-84.9208	0/1:75:38,37:38:1337:37:1313:-62.145,0,-64.8325	0/1:68:36,32:36:1269:32:1152:-53.0502,0,-62.8923	0/1:59:49,10:49:1751:10:360:-6.34149,0,-110.98	0/0:58:55,3:55:1944:3:108:0,-10.0437,-139.729	0/1:94:74,20:74:2567:20:720:-18.0158,0,-137.463	0/1:66:57,9:57:2044:9:324:-1.11341,0,-117.417	0/0:38:34,4:34:1196:4:140:0,-1.39062,-76.0449	0/1:37:32,5:32:1140:5:180:-0.878291,0,-74.6764	0/1:24:21,3:21:740:3:108:-0.436646,0,-47.2826	0/0:67:61,6:61:2169:6:216:0,-6.09612,-133.871	0/0:33:33,0:33:1179:0:0:0,-9.93399,-79.471	0/0:46:42,4:42:1485:4:144:0,-4.38017,-91.8916	0/1:48:22,26:22:792:26:936:-48.6464,0,-45.7501	0/1:48:22,26:22:784:26:936:-49.5305,0,-41.578	0/1:102:13,89:13:460:89:3173:-187.427,0,-3.88394	0/1:75:29,46:29:1044:46:1648:-86.8839,0,-52.6685	0/1:37:29,8:29:1044:8:284:-9.41719,0,-61.7447	0/1:47:12,35:12:413:35:1260:-71.9951,0,-16.0979	0/1:175:74,101:74:2633:101:3609:-195.527,0,-152.191	0/1:90:29,61:29:1027:61:2188:-121.865,0,-41.6005	0/0:60:53,7:53:1881:7:252:0,-0.550105,-118.204	0/1:108:24,84:24:860:84:3020:-172.985,0,-35.9509	0/1:63:25,38:25:900:38:1353:-74.0816,0,-43.4636	0/1:27:17,10:17:612:10:360:-15.8888,0,-37.1584	0/1:9:5,4:5:180:4:144:-7.41468,0,-9.71311	1/1:25:2,23:2:72:23:828:-50.4823,-2.0105,0	0/1:9:1,8:1:36:8:288:-15.9693,0,-0.0269322	0/1:5:1,4:1:36:4:144:-7.96206,0,-1.23105	0/1:7:2,5:2:72:5:180:-9.66284,0,-2.74704	0/1:232:198,34:198:7066:34:1224:-13.7495,0,-476.54	0/1:69:19,50:19:672:50:1796:-102.506,0,-28.365	0/0:31:28,3:28:1008:3:108:0,-2.16755,-60.2543	1/1:1:0,1:0:0:1:36:-2.7362,-0.30103,0	0/1:72:47,25:47:1692:25:900:-39.2558,0,-95.4113	0/1:40:31,9:31:1112:9:324:-10.2339,0,-65.0947	0/1:140:34,106:34:1220:106:3808:-217.393,0,-45.3254	0/0:99:96,3:96:3395:3:108:0,-22.3859,-247.533	0/0:41:36,5:36:1284:5:180:0,-0.0780756,-84.5371	0/1:58:25,33:25:885:33:1184:-63.1858,0,-52.4737	0/1:36:17,19:17:608:19:684:-32.8374,0,-31.2266	0/1:155:49,106:49:1760:106:3804:-204.007,0,-87.5262	0/1:66:44,22:44:1576:22:792:-32.8392,0,-97.0115	0/1:72:41,31:41:1468:31:1108:-52.4434,0,-87.7552	0/1:86:40,46:40:1423:46:1648:-86.8233,0,-84.9045	0/1:12:2,10:2:72:10:345:-19.9027,0,-2.19126	0/1:124:37,87:37:1320:87:3116:-163.074,0,-52.1371	0/1:17:11,6:11:396:6:216:-9.9316,0,-26.7587	1/1:11:1,10:1:36:10:352:-20.4465,-0.575128,0	0/1:33:16,17:16:572:17:612:-32.2035,0,-32.0518	0/1:34:13,21:13:468:21:752:-39.1028,0,-20.7826	0/1:5:1,4:1:36:4:144:-8.19576,0,-1.68247	1/1:5:0,5:0:0:5:180:-12.4232,-1.50515,0	0/1:56:26,30:26:932:30:1076:-57.2197,0,-49.6227	0/1:47:32,15:32:1144:15:532:-21.095,0,-73.2515	0/1:8:3,5:3:108:5:180:-9.77532,0,-6.14447	0/1:73:15,58:15:540:58:2084:-119.405,0,-21.2558	0/1:68:39,29:39:1392:29:1044:-48.7591,0,-84.63	0/1:37:26,11:26:936:11:392:-15.9884,0,-56.1629	1/1:47:1,46:1:36:46:1656:-106.349,-11.0939,0	0/1:51:30,21:30:1080:21:756:-34.9709,0,-66.4372	0/1:73:21,52:21:756:52:1868:-102.087,0,-33.6095	0/0:24:23,1:23:820:1:36:0,-4.48852,-55.6814	0/1:35:17,18:17:612:18:644:-31.1203,0,-31.6015	0/1:44:38,6:38:1356:6:216:-1.80379,0,-91.4985	0/1:18:4,14:4:140:14:496:-27.9535,0,-4.67537	0/1:69:16,53:16:568:53:1908:-100.771,0,-17.3443	0/1:32:10,22:10:351:22:792:-41.2853,0,-14.4221	0/1:103:65,38:65:2304:38:1360:-62.2856,0,-131.875	0/1:86:27,59:27:972:59:2120:-115.879,0,-45.6785	0/1:83:41,42:41:1476:42:1500:-70.593,0,-70.4197	0/1:44:23,21:23:828:21:756:-34.9429,0,-40.7961	0/1:21:3,18:3:108:18:648:-35.0499,0,-1.33974	0/1:80:46,34:46:1643:34:1216:-59.1985,0,-88.5559	0/1:41:13,28:13:464:28:1000:-51.4718,0,-16.9706	0/1:157:58,99:58:2075:99:3556:-187.933,0,-106.713	0/1:102:81,21:81:2883:21:756:-19.1078,0,-186.914	0/1:87:73,14:73:2588:14:504:-6.93778,0,-170.181	0/0:49:47,2:47:1663:2:72:0,-9.89074,-119.708	0/1:137:116,21:116:4111:21:756:-8.74777,0,-271.057	0/0:17:15,2:15:536:2:72:0,-0.255967,-30.7744	0/1:73:60,13:60:2133:13:464:-7.73835,0,-123.996	0/1:78:63,15:63:2231:15:540:-12.3931,0,-122.699	0/1:48:40,8:40:1436:8:288:-5.52484,0,-85.2611	0/1:49:37,11:37:1324:11:392:-12.2269,0,-78.5158	0/1:21:16,5:16:576:5:180:-5.86193,0,-35.0419	0/1:40:15,25:15:540:25:900:-47.3187,0,-29.2253	0/1:145:121,24:121:4322:24:864:-13.8253,0,-278.118
chr02	9701312	.	A	T	12094.1	PASS	AB=0.453757;ABP=35.1431;AC=30;AF=0.163043;AN=184;AO=785;CIGAR=1X;DP=5676;DPB=5676;DPRA=0.906065;EPP=1707.62;EPPR=10619.3;GTI=2;LEN=1;MEANALT=1;MQM=45.665;MQMR=52.0217;NS=92;NUMALT=1;ODDS=2.4075;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27965;QR=173750;RO=4889;RPL=0;RPP=1707.62;RPPR=10619.3;RPR=785;RUN=1;SAF=0;SAP=1707.62;SAR=785;SRF=0;SRP=10619.3;SRR=4889;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.5773	0/0:59:59,0:59:2099:0:0:0,-17.7608,-187.817	0/0:57:57,0:57:2044:0:0:0,-17.1587,-180.67	0/0:76:76,0:76:2713:0:0:0,-22.8783,-242.429	0/1:19:10,9:10:356:9:324:-23.3783,0,-26.6109	0/1:33:24,9:24:855:9:305:-17.5743,0,-67.099	0/0:55:55,0:55:1960:0:0:0,-16.5566,-175.262	0/0:95:95,0:95:3390:0:0:0,-28.5978,-304.123	0/0:32:32,0:32:1127:0:0:0,-9.63296,-100.93	0/0:68:68,0:68:2424:0:0:0,-20.47,-217.148	0/0:72:72,0:72:2541:0:0:0,-21.6742,-227.543	0/0:56:56,0:56:1987:0:0:0,-16.8577,-177.136	0/0:63:63,0:63:2221:0:0:0,-18.9649,-199.07	0/1:100:57,43:57:2012:43:1540:-106.628,0,-150.676	0/1:41:21,20:21:752:20:716:-51.8729,0,-55.0654	0/1:62:35,27:35:1232:27:968:-67.5837,0,-92.2442	0/0:75:75,0:75:2650:0:0:0,-22.5772,-237.154	0/1:50:21,29:21:747:29:1023:-76.1234,0,-52.2399	0/0:43:43,0:43:1523:0:0:0,-12.9443,-136.579	0/1:81:45,36:45:1592:36:1288:-90.8513,0,-118.561	0/1:69:35,34:35:1226:34:1216:-86.6962,0,-89.5821	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.555	0/0:32:32,0:32:1144:0:0:0,-9.63296,-102.831	0/1:76:41,35:41:1440:35:1239:-87.4902,0,-106.78	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.2923	0/0:206:206,0:206:7336:0:0:0,-62.0122,-659.638	0/0:124:124,0:124:4384:0:0:0,-37.3277,-393.783	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.4442	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.216	0/0:77:77,0:77:2731:0:0:0,-23.1793,-244.758	0/1:64:28,36:28:995:36:1270:-94.3959,0,-70.0321	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.4709	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/1:17:8,9:8:288:9:320:-23.721,0,-21.0839	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/0:220:220,0:220:7818:0:0:0,-66.2266,-703.04	0/0:134:134,0:134:4782:0:0:0,-40.338,-429.273	0/1:68:38,30:38:1351:30:1072:-74.897,0,-100.743	0/1:7:1,6:1:36:6:208:-16.7318,0,-1.48596	0/0:74:74,0:74:2592:0:0:0,-22.2762,-232.754	0/0:41:41,0:41:1464:0:0:0,-12.3422,-131.874	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.132	0/0:57:57,0:57:2018:0:0:0,-17.1587,-180.853	0/1:56:34,22:34:1220:22:784:-53.3995,0,-92.277	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.681	0/1:68:23,45:23:807:45:1620:-122.691,0,-52.2985	0/0:107:107,0:107:3816:0:0:0,-32.2102,-341.756	0/0:68:68,0:68:2423:0:0:0,-20.47,-216.043	0/0:84:84,0:84:2984:0:0:0,-25.2865,-267.382	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.729	0/1:4:3,1:3:108:1:36:-2.36269,0,-8.82842	0/0:78:78,0:78:2770:0:0:0,-23.4803,-248.155	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2043	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4823	0/1:64:34,30:34:1220:30:1072:-75.364,0,-90.5532	0/0:13:13,0:13:449:0:0:0,-3.91339,-39.2706	0/1:4:3,1:3:108:1:36:-2.36269,0,-8.86823	0/1:5:3,2:3:99:2:72:-5.22526,0,-7.72773	0/0:43:43,0:43:1519:0:0:0,-12.9443,-136.12	0/1:100:55,45:55:1959:45:1611:-113.785,0,-145.339	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.482	0/0:85:84,0:84:2981:0:0:0,-25.2865,-267.213	0/1:115:63,52:63:2247:52:1864:-131.824,0,-166.975	0/1:61:50,11:50:1773:11:388:-16.4501,0,-140.993	0/0:58:58,0:58:2031:0:0:0,-17.4597,-181.717	0/1:69:21,48:21:752:48:1716:-131.279,0,-46.9248	0/0:50:50,0:50:1766:0:0:0,-15.0515,-158.174	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.045	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.195	0/1:107:63,44:63:2234:44:1563:-106.396,0,-168.945	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.3405	0/0:73:73,0:73:2599:0:0:0,-21.9752,-233.475	0/1:44:29,15:29:1044:15:532:-34.4505,0,-80.7334	0/0:92:92,0:92:3276:0:0:0,-27.6948,-294.227	0/0:57:57,0:57:2048:0:0:0,-17.1587,-183.659	0/0:89:89,0:89:3117:0:0:0,-26.7917,-279.491	0/0:52:52,0:52:1841:0:0:0,-15.6536,-164.693	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0498	0/0:52:52,0:52:1864:0:0:0,-15.6536,-167.593	0/1:53:24,29:24:860:29:1027:-75.1498,0,-61.2931	0/0:95:95,0:95:3352:0:0:0,-28.5978,-299.961	0/0:95:95,0:95:3404:0:0:0,-28.5978,-302.988	0/0:61:61,0:61:2175:0:0:0,-18.3628,-193.537	0/1:75:35,40:35:1260:40:1424:-104.017,0,-90.3467	0/0:158:158,0:158:5601:0:0:0,-47.5627,-500.245	0/1:30:19,11:19:680:11:396:-26.5553,0,-52.3476	0/0:78:77,0:77:2738:0:0:0,-23.1793,-245.382	0/0:77:77,0:77:2751:0:0:0,-23.1793,-246.151	0/0:51:51,0:51:1832:0:0:0,-15.3525,-164.629	0/1:132:96,36:96:3423:36:1271:-73.4873,0,-267.874	0/1:56:26,30:26:915:30:1064:-78.0118,0,-64.856	0/0:33:33,0:33:1173:0:0:0,-9.93399,-104.44	0/0:87:87,0:87:3116:0:0:0,-26.1896,-279.142
chr02	9721882	.	G	A	7287.19	PASS	AB=0.488197;ABP=4.13797;AC=27;AF=0.146739;AN=184;AO=458;CIGAR=1X;DP=4226;DPB=4226;DPRA=0.854314;EPP=997.545;EPPR=8128.74;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=92;NUMALT=1;ODDS=5.19308;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=16411;QR=133860;RO=3766;RPL=458;RPP=997.545;RPPR=8128.74;RPR=0;RUN=1;SAF=0;SAP=997.545;SAR=458;SRF=0;SRP=8180.78;SRR=3766;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.976	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:84:84,0:84:2980:0:0:0,-25.2865,-268.432	0/0:71:71,0:71:2512:0:0:0,-21.3731,-226.331	0/1:25:10,15:10:356:15:540:-41.4108,0,-24.8555	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3501	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/0:65:65,0:65:2314:0:0:0,-19.5669,-208.519	0/0:78:78,0:78:2769:0:0:0,-23.4803,-249.451	0/0:48:48,0:48:1684:0:0:0,-14.4494,-151.844	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.7422	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:28:14,14:14:488:14:500:-36.9073,0,-35.8216	0/1:27:18,9:18:644:9:324:-21.378,0,-50.1628	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:57:34,23:34:1188:23:828:-57.6854,0,-90.0634	0/1:52:34,18:34:1220:18:644:-42.637,0,-94.4532	0/0:72:72,0:72:2531:0:0:0,-21.6742,-228.043	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:38:14,24:14:504:24:864:-66.6434,0,-34.259	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.581	0/0:97:97,0:97:3464:0:0:0,-29.1999,-311.973	0/0:152:151,0:151:5368:0:0:0,-45.4555,-482.993	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:108:108,0:108:3820:0:0:0,-32.5112,-343.999	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/1:50:30,20:30:1038:20:716:-49.7162,0,-78.6761	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.585	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.876	0/1:20:12,8:12:428:8:279:-19.4269,0,-32.8382	.:.:.:.:.:.:.:.	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:124:124,0:124:4339:0:0:0,-37.3277,-390.69	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/1:45:29,16:29:1040:16:572:-38.2671,0,-80.368	0/0:150:149,1:149:5268:1:36:0,-41.5562,-470.661	0/0:50:49,1:49:1756:1:36:0,-11.4532,-154.726	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:49:48,0:48:1716:0:0:0,-14.4494,-154.513	.:.:.:.:.:.:.:.	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.734	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:62:25,37:25:881:37:1308:-99.3554,0,-60.942	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:61:33,28:33:1151:28:1008:-72.6735,0,-85.5325	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:77:27,50:27:957:50:1800:-139.103,0,-63.2646	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/1:63:20,43:20:703:43:1539:-119.837,0,-44.6286	0/0:93:93,0:93:3269:0:0:0,-27.9958,-294.433	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:45:26,19:26:932:19:684:-48.344,0,-70.6525	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:107:107,0:107:3789:0:0:0,-32.2102,-341.211	0/1:33:19,14:19:671:14:504:-35.7641,0,-50.7818	0/0:104:103,1:103:3645:1:36:0,-27.7088,-324.658	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/0:77:77,0:77:2725:0:0:0,-23.1793,-245.493	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/0:56:56,0:56:1980:0:0:0,-16.8577,-178.475	0/1:42:26,16:26:936:16:576:-39.5317,0,-71.9162	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:57:29,28:29:1027:28:993:-72.5247,0,-75.5835	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	0/0:58:58,0:58:2043:0:0:0,-17.4597,-184.142	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944
chr02	9721961	.	GCTTT	GCTTA,GTTA	299541	PASS	AB=0.597856,0.399365;ABP=212.528,224.596;AC=161,27;AF=0.856383,0.143617;AN=188;AO=9862,1015;CIGAR=4M1X,1M1D2M1X;DP=10942;DPB=10740.6;DPRA=29.4032,0.843336;EPP=21418.1,2207.05;EPPR=16.0391;GTI=4;LEN=1,4;MEANALT=1.83871,2.19355;MQM=56.7784,50.4315;MQMR=60;NS=94;NUMALT=2;ODDS=0.218779;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=70.6667,70.6667;PQR=34;PRO=3;QA=346869,34917;QR=175;RO=6;RPL=4485,650;RPP=178.204,176.782;RPPR=4.45795;RPR=5377,365;RUN=1,1;SAF=4485,650;SAP=178.204,176.782;SAR=5377,365;SRF=4;SRP=4.45795;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,46,0:0:0:46,0:1612,0:-144.569,-13.8474,0,-144.569,-13.8474,-144.569	1/1:92:0,92,0:0:0:92,0:3193,0:-286.845,-27.6948,0,-286.845,-27.6948,-286.845	1/1:104:0,103,0:0:0:103,0:3630,0:-326.102,-31.0061,0,-326.102,-31.0061,-326.102	1/1:218:0,217,0:0:0:217,0:7682,0:-690.487,-65.3235,0,-690.487,-65.3235,-690.487	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:43:0,34,9:0:0:34,9:1196,303:-122.117,-24.8865,-14.6515,-97.5701,0,-94.8608	1/1:136:0,136,0:0:0:136,0:4764,0:-427.586,-40.9401,0,-427.586,-40.9401,-427.586	1/1:148:0,146,0:0:0:146,0:5182,0:-465.464,-43.9504,0,-465.464,-43.9504,-465.464	1/1:157:0,156,0:0:0:156,0:5484,0:-492.102,-46.9607,0,-492.102,-46.9607,-492.102	1/1:170:1,167,0:1:25:167,0:5834,0:-521.952,-48.3442,0,-522.253,-50.272,-524.201	1/1:83:0,83,0:0:0:83,0:2919,0:-262.629,-24.9855,0,-262.629,-24.9855,-262.629	1/1:210:0,210,0:0:0:210,0:7400,0:-663.707,-63.2163,0,-663.707,-63.2163,-663.707	1/1:141:0,139,0:0:0:139,0:4898,0:-438.876,-41.8432,0,-438.876,-41.8432,-438.876	1/2:88:0,55,33:0:0:55,33:1946,1112:-248.748,-90.4455,-73.8889,-158.646,0,-148.712	1/2:123:0,59,64:0:0:59,64:2037,2203:-333.077,-167.852,-150.091,-165.56,0,-146.294	1/2:83:2,56,25:2:71:56,25:1978,854:-223.857,-63.5048,-52.4333,-155.159,0,-153.418	1/1:82:0,82,0:0:0:82,0:2907,0:-259.615,-24.6845,0,-259.615,-24.6845,-259.615	1/2:41:0,29,12:0:0:29,12:1032,420:-118.536,-34.5221,-25.7923,-84.3655,0,-80.7532	1/1:43:0,43,0:0:0:43,0:1494,0:-134.598,-12.9443,0,-134.598,-12.9443,-134.598	1/2:248:0,111,136:0:0:111,136:3929,4667:-663.532,-343.756,-310.342,-319.822,0,-278.882	1/2:175:0,113,62:0:0:113,62:4006,2126:-498.832,-172.943,-138.926,-326.236,0,-307.572	1/1:49:0,49,0:0:0:49,0:1739,0:-156.604,-14.7505,0,-156.604,-14.7505,-156.604	1/1:197:0,197,0:0:0:197,0:6930,0:-622.476,-59.3029,0,-622.476,-59.3029,-622.476	1/2:75:0,43,32:0:0:43,32:1496,1065:-208.122,-86.5173,-73.573,-121.944,0,-112.311	1/1:82:0,82,0:0:0:82,0:2843,0:-255.683,-24.6845,0,-255.683,-24.6845,-255.683	1/1:280:0,280,0:0:0:280,0:9899,0:-890.558,-84.2884,0,-890.558,-84.2884,-890.558	1/1:325:0,322,0:0:0:322,0:11322,0:-1015.73,-96.9317,0,-1015.73,-96.9317,-1015.73	1/1:78:0,78,0:0:0:78,0:2714,0:-244.066,-23.4803,0,-244.066,-23.4803,-244.066	1/1:203:0,201,0:0:0:201,0:7029,0:-632.224,-60.507,0,-632.224,-60.507,-632.224	1/1:157:0,157,0:0:0:157,0:5563,0:-499.765,-47.2617,0,-499.765,-47.2617,-499.765	1/2:131:0,83,48:0:0:83,48:2948,1646:-365.913,-125.95,-100.965,-240.298,0,-225.848	1/1:4:0,4,0:0:0:4,0:136,0:-12.5708,-1.20412,0,-12.5708,-1.20412,-12.5708	1/1:14:0,14,0:0:0:14,0:496,0:-44.928,-4.21442,0,-44.928,-4.21442,-44.928	1/1:2:0,2,0:0:0:2,0:64,0:-6.07524,-0.60206,0,-6.07524,-0.60206,-6.07524	1/2:9:0,5,4:0:0:5,4:180,141:-26.4993,-11.8328,-10.3276,-15.0219,0,-13.8178	1/1:15:0,15,0:0:0:15,0:521,0:-46.5535,-4.51545,0,-46.5535,-4.51545,-46.5535	1/1:370:0,369,0:0:0:369,0:13035,0:-1171.78,-111.08,0,-1171.78,-111.08,-1171.78	1/1:139:0,139,0:0:0:139,0:4860,0:-436.93,-41.8432,0,-436.93,-41.8432,-436.93	1/2:46:0,29,17:0:0:29,17:1027,575:-130.032,-46.9513,-38.2214,-83.4234,0,-78.3059	1/1:4:0,4,0:0:0:4,0:140,0:-12.8069,-1.20412,0,-12.8069,-1.20412,-12.8069	1/1:159:0,156,0:0:0:156,0:5508,0:-493.823,-46.9607,0,-493.823,-46.9607,-493.823	1/1:49:0,49,0:0:0:49,0:1735,0:-156.144,-14.7505,0,-156.144,-14.7505,-156.144	1/1:132:0,132,0:0:0:132,0:4650,0:-417.491,-39.736,0,-417.491,-39.736,-417.491	1/1:150:0,149,0:0:0:149,0:5247,0:-471.581,-44.8535,0,-471.581,-44.8535,-471.581	1/2:115:0,58,57:0:0:58,57:2052,1981:-317.629,-150.555,-133.095,-167.414,0,-150.255	1/1:170:1,169,0:1:31:169,0:5923,0:-529.879,-48.0756,0,-530.18,-50.8741,-532.669	1/2:82:0,63,19:0:0:63,19:2217,648:-232.742,-52.9192,-33.9543,-180.165,0,-174.446	1/1:188:0,186,0:0:0:186,0:6560,0:-589.141,-55.9916,0,-589.141,-55.9916,-589.141	1/1:140:0,139,0:0:0:139,0:4858,0:-436.854,-41.8432,0,-436.854,-41.8432,-436.854	1/1:120:0,119,1:0:0:119,1:4223,34:-378.635,-35.8226,0,-375.877,-32.7247,-375.576	1/1:105:0,104,0:0:0:104,0:3603,0:-324.103,-31.3071,0,-324.103,-31.3071,-324.103	2/2:4:0,0,4:0:0:0,4:0,142:-12.0921,-12.0921,-12.0921,-1.20412,-1.20412,0	1/1:79:0,79,0:0:0:79,0:2764,0:-248.638,-23.7814,0,-248.638,-23.7814,-248.638	1/1:67:0,67,0:0:0:67,0:2363,0:-212.815,-20.169,0,-212.815,-20.169,-212.815	1/1:4:0,4,0:0:0:4,0:144,0:-13.2969,-1.20412,0,-13.2969,-1.20412,-13.2969	1/2:122:0,98,24:0:0:98,24:3385,827:-342.249,-67.5208,-38.0199,-275.073,0,-267.848	1/1:71:0,66,0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chr02	9723186	.	C	T	78349.6	PASS	AB=0.503804;ABP=3.15898;AC=158;AF=0.840426;AN=188;AO=3559;CIGAR=1X;DP=4155;DPB=4155;DPRA=18.0435;EPP=7731.28;EPPR=1288.52;GTI=3;LEN=1;MEANALT=1.03261;MQM=54.0815;MQMR=47.2517;NS=94;NUMALT=1;ODDS=1.60768;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127457;QR=21131;RO=592;RPL=0;RPP=7731.28;RPPR=1288.52;RPR=3559;RUN=1;SAF=3559;SAP=7731.28;SAR=0;SRF=592;SRP=1288.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:673:-60.5138,-5.71957,0	1/1:58:0,58:0:0:58:2080:-186.363,-17.4597,0	1/1:57:0,57:0:0:57:2048:-183.658,-17.1587,0	1/1:53:0,53:0:0:53:1892:-170.13,-15.9546,0	0/1:41:20,21:20:704:21:752:-55.2536,0,-50.9472	0/1:35:19,16:19:676:16:576:-41.5182,0,-50.3174	1/1:39:0,39:0:0:39:1404:-126.393,-11.7402,0	1/1:87:0,86:0:0:86:3087:-276.661,-25.8886,0	1/1:28:0,28:0:0:28:993:-89.1813,-8.42884,0	1/1:66:0,66:0:0:66:2368:-213.044,-19.868,0	1/1:37:0,37:0:0:37:1323:-118.99,-11.1381,0	1/1:22:0,22:0:0:22:788:-70.9861,-6.62266,0	1/1:29:0,29:0:0:29:1044:-93.6402,-8.72987,0	0/1:66:26,40:26:936:40:1440:-109.685,0,-63.8034	0/1:26:13,13:13:464:13:468:-34.5909,0,-33.9164	0/1:19:12,7:12:428:7:252:-17.1499,0,-32.5846	1/1:38:0,38:0:0:38:1364:-122.619,-11.4391,0	0/1:26:13,13:13:468:13:468:-34.5205,0,-34.1122	1/1:15:0,15:0:0:15:540:-47.6686,-4.51545,0	0/1:67:33,34:33:1176:34:1220:-89.5581,0,-83.7747	0/1:28:8,20:8:288:20:720:-56.4417,0,-17.6572	1/1:62:0,62:0:0:62:2220:-199.941,-18.6639,0	1/1:18:0,18:0:0:18:648:-58.6073,-5.41854,0	0/1:49:28,21:28:970:21:756:-53.5209,0,-72.3014	1/1:35:0,35:0:0:35:1256:-113.132,-10.5361,0	1/1:147:0,147:0:0:147:5269:-473.663,-44.2514,0	1/1:101:0,101:0:0:101:3619:-325.234,-30.404,0	1/1:10:0,10:0:0:10:356:-32.316,-3.0103,0	1/1:100:0,100:0:0:100:3584:-322.319,-30.103,0	1/1:78:0,78:0:0:78:2808:-250.916,-23.4803,0	0/1:83:44,39:44:1584:39:1381:-99.3188,0,-115.856	1/1:5:0,5:0:0:5:180:-16.5286,-1.50515,0	1/1:7:0,7:0:0:7:252:-22.9927,-2.10721,0	1/1:5:0,5:0:0:5:180:-16.5048,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	1/1:6:0,6:0:0:6:212:-19.38,-1.80618,0	1/1:97:0,97:0:0:97:3480:-313.061,-29.1999,0	1/1:109:0,109:0:0:109:3894:-349.49,-32.8123,0	0/1:23:16,7:16:576:7:248:-15.6596,0,-44.9684	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.8663	1/1:51:0,51:0:0:51:1813:-162.812,-15.3525,0	1/1:19:0,19:0:0:19:684:-61.7847,-5.71957,0	1/1:105:0,105:0:0:105:3759:-337.491,-31.6082,0	1/1:25:0,25:0:0:25:900:-81.2363,-7.52575,0	0/1:25:13,12:13:464:12:432:-31.6613,0,-34.2174	1/1:59:0,59:0:0:59:2112:-190.225,-17.7608,0	0/1:87:43,44:43:1536:44:1571:-114.553,0,-111.681	1/1:96:0,96:0:0:96:3456:-309.931,-28.8989,0	1/1:56:0,56:0:0:56:1999:-179.118,-16.8577,0	1/1:56:0,56:0:0:56:2012:-180.768,-16.8577,0	1/1:90:0,90:0:0:90:3224:-290.158,-27.0927,0	0/1:6:1,5:1:36:5:180:-14.7316,0,-1.76063	1/1:82:0,82:0:0:82:2928:-262.225,-24.6845,0	1/1:19:0,19:0:0:19:684:-61.7874,-5.71957,0	1/1:9:0,9:0:0:9:312:-28.3164,-2.70927,0	0/1:43:12,31:12:428:31:1112:-87.2942,0,-25.6572	1/1:15:0,15:0:0:15:536:-47.7535,-4.51545,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.56681	0/1:15:7,8:7:252:8:288:-21.6888,0,-18.3121	1/1:39:0,39:0:0:39:1404:-126.411,-11.7402,0	0/1:115:58,57:58:2076:57:2052:-149.928,0,-150.124	1/1:5:0,5:0:0:5:176:-16.1721,-1.50515,0	1/1:51:0,51:0:0:51:1832:-164.977,-15.3525,0	0/1:92:48,44:48:1724:44:1572:-113.596,0,-126.383	1/1:45:2,43:2:72:43:1540:-131.697,-6.75683,0	1/1:39:0,39:0:0:39:1392:-125.443,-11.7402,0	0/1:47:26,21:26:913:21:756:-54.1672,0,-66.6352	1/1:47:0,47:0:0:47:1669:-150.373,-14.1484,0	1/1:11:0,11:0:0:11:396:-35.9184,-3.31133,0	1/1:26:0,26:0:0:26:936:-84.103,-7.82678,0	0/1:71:35,36:35:1252:36:1296:-95.4693,0,-88.8262	1/1:15:0,15:0:0:15:532:-48.1807,-4.51545,0	1/1:69:0,69:0:0:69:2476:-222.194,-20.7711,0	0/1:33:13,20:13:464:20:704:-53.5671,0,-31.642	1/1:66:0,66:0:0:66:2372:-212.843,-19.868,0	1/1:59:0,59:0:0:59:2101:-189.13,-17.7608,0	1/1:65:0,65:0:0:65:2319:-207.695,-19.567,0	1/1:24:0,24:0:0:24:860:-77.4244,-7.22472,0	1/1:2:0,2:0:0:2:72:-6.54384,-0.60206,0	1/1:29:0,29:0:0:29:1044:-94.0158,-8.72987,0	0/1:47:25,19:25:888:19:684:-48.0386,0,-65.6417	1/1:80:0,80:0:0:80:2853:-256.634,-24.0824,0	1/1:70:0,70:0:0:70:2480:-222.724,-21.0721,0	1/1:12:0,12:0:0:12:432:-39.0039,-3.61236,0	0/1:38:21,17:21:752:17:603:-43.036,0,-55.3089	1/1:57:1,56:1:36:56:2000:-176.82,-13.9711,0	0/1:18:6,12:6:212:12:432:-33.7041,0,-13.8589	1/1:38:0,38:0:0:38:1368:-122.509,-11.4391,0	1/1:27:0,27:0:0:27:957:-86.2231,-8.12781,0	1/1:15:0,15:0:0:15:540:-48.8267,-4.51545,0	0/1:63:29,34:29:1040:34:1214:-90.2435,0,-73.8089	0/1:20:15,5:15:540:5:180:-10.4761,0,-42.3179	1/1:29:0,29:0:0:29:1036:-93.4878,-8.72987,0	1/1:33:0,33:0:0:33:1188:-106.442,-9.93399,0
chr02	9723220	.	C	G	9244.01	PASS	AB=0.489796;ABP=4.07388;AC=30;AF=0.159574;AN=188;AO=584;CIGAR=1X;DP=4119;DPB=4119;DPRA=0.962932;EPP=1271.15;EPPR=7676.99;GTI=3;LEN=1;MEANALT=1;MQM=47.1627;MQMR=54.0521;NS=94;NUMALT=1;ODDS=1.73717;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20837;QR=125712;RO=3534;RPL=584;RPP=1271.15;RPPR=7676.99;RPR=0;RUN=1;SAF=584;SAP=1271.15;SAR=0;SRF=3534;SRP=7676.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:684:0:0:0,-5.71957,-60.7906	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.084	0/0:57:57,0:57:2036:0:0:0,-17.1587,-182.588	0/0:52:52,0:52:1835:0:0:0,-15.6536,-165.069	0/1:41:22,19:22:792:19:680:-48.7759,0,-58.8457	0/1:36:16,20:16:563:20:711:-53.1408,0,-39.859	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.722	0/0:86:86,0:86:3051:0:0:0,-25.8886,-273.798	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.1716	0/0:64:64,0:64:2287:0:0:0,-19.2659,-205.762	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.557	0/0:21:21,0:21:743:0:0:0,-6.32163,-66.9548	0/0:29:29,0:29:1036:0:0:0,-8.72987,-92.9291	0/1:65:40,25:40:1420:25:888:-60.1422,0,-108.199	0/1:24:12,12:12:423:12:432:-31.6535,0,-31.1424	0/1:19:7,12:7:248:12:428:-32.5846,0,-16.788	0/0:38:38,0:38:1329:0:0:0,-11.4391,-119.552	0/1:26:13,13:13:455:13:460:-33.4091,0,-33.3549	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.1607	0/1:67:34,33:34:1212:33:1176:-83.7712,0,-88.8418	0/1:28:20,8:20:716:8:288:-17.6572,0,-56.107	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.055	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6073	0/1:48:20,28:20:701:28:1004:-75.5522,0,-48.8736	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.501	0/0:146:146,0:146:5218:0:0:0,-43.9504,-469.101	0/0:100:100,0:100:3552:0:0:0,-30.103,-319.3	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4424	0/0:96:96,0:96:3434:0:0:0,-28.8989,-308.936	0/0:79:79,0:79:2812:0:0:0,-23.7814,-251.3	0/1:82:38,44:38:1364:44:1580:-115.814,0,-98.0938	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5286	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7624	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5048	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2801	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.7867	0/0:95:95,0:95:3376:0:0:0,-28.5978,-303.902	0/0:109:109,0:109:3863:0:0:0,-32.8123,-346.849	0/1:23:7,16:7:248:16:568:-44.2664,0,-15.676	1/1:4:0,4:0:0:4:144:-13.2217,-1.20412,0	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.347	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.4263	0/0:106:106,0:106:3800:0:0:0,-31.9092,-341.104	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7053	0/1:25:12,13:12:432:13:468:-34.5626,0,-31.6613	0/0:58:58,0:58:2046:0:0:0,-17.4597,-184.246	0/1:85:44,41:44:1519:41:1476:-106.868,0,-109.736	0/0:95:95,0:95:3398:0:0:0,-28.5978,-305.172	0/0:56:56,0:56:1989:0:0:0,-16.8577,-178.253	0/0:56:56,0:56:1977:0:0:0,-16.8577,-177.498	0/0:89:89,0:89:3166:0:0:0,-26.7917,-284.919	0/1:6:5,1:5:180:1:36:-1.76063,0,-14.7316	0/0:83:83,0:83:2967:0:0:0,-24.9855,-265.623	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.5498	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.248	0/1:44:33,11:33:1168:11:396:-22.489,0,-92.0273	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.8455	1/1:1:0,1:0:0:1:36:-3.56681,-0.30103,0	0/1:15:8,7:8:288:7:252:-18.3121,0,-21.6888	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.696	0/1:117:58,59:58:2054:59:2106:-152.232,0,-149.633	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7148	0/0:52:51,0:51:1806:0:0:0,-15.3525,-162.285	0/1:92:43,49:43:1525:49:1760:-129.254,0,-109.748	0/0:45:43,2:43:1524:2:72:0,-6.75682,-130.157	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.641	0/1:47:22,25:22:783:25:891:-64.6517,0,-56.5927	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.581	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5501	0/0:27:27,0:27:968:0:0:0,-8.12781,-86.9777	0/1:70:36,34:36:1292:34:1197:-84.6853,0,-94.3902	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.429	0/0:68:68,0:68:2399:0:0:0,-20.47,-215.243	0/1:32:19,13:19:672:13:464:-31.943,0,-50.9488	0/0:65:65,0:65:2303:0:0:0,-19.5669,-206.786	0/0:58:58,0:58:2058:0:0:0,-17.4597,-185.276	0/0:66:66,0:66:2367:0:0:0,-19.868,-211.85	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.0686	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69863	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.6582	0/1:46:20,26:20:701:26:915:-67.1941,0,-49.3727	0/0:80:80,0:80:2827:0:0:0,-24.0824,-254.273	0/0:70:70,0:70:2489:0:0:0,-21.0721,-223.517	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.6429	0/1:36:17,19:17:595:19:661:-48.1297,0,-42.918	0/0:55:54,1:54:1924:1:36:0,-13.369,-170.065	0/1:19:14,5:14:495:5:180:-10.7428,0,-39.0557	0/0:36:36,0:36:1277:0:0:0,-10.8371,-114.336	0/0:26:26,0:26:932:0:0:0,-7.82678,-83.8582	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.4677	0/1:62:34,28:34:1205:28:1000:-70.898,0,-89.6611	0/1:21:6,15:6:216:15:532:-41.4751,0,-13.4114	0/0:29:29,0:29:1010:0:0:0,-8.72987,-91.1427	0/0:33:33,0:33:1176:0:0:0,-9.93399,-105.365
chr02	9723230	.	AG	CG,CA	87905.1	PASS	AB=0.512576,0.484822;ABP=4.59418,5.31737;AC=158,30;AF=0.840426,0.159574;AN=188;AO=3479,569;CIGAR=1X1M,2X;DP=4053;DPB=4059.5;DPRA=17.6,1.03588;EPP=7557.56,1238.58;EPPR=7.35324;GTI=3;LEN=1,2;MEANALT=1.3587,1.96875;MQM=54.123,46.8383;MQMR=60;NS=94;NUMALT=2;ODDS=2.0007;PAIRED=0,0;PAIREDR=0;PAO=6.5,6.5;PQA=225.5,225.5;PQR=0;PRO=0;QA=123181,19956;QR=59;RO=2;RPL=3479,569;RPP=7557.56,1238.58;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=3479,569;SAP=7557.56,1238.58;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20,0:0:0:20,0:697,0:-62.6245,-6.0206,0,-62.6245,-6.0206,-62.6245	1/1:56:0,56,0:0:0:56,0:2000,0:-179.654,-16.8577,0,-179.654,-16.8577,-179.654	1/1:56:0,56,0:0:0:56,0:1962,0:-176.405,-16.8577,0,-176.405,-16.8577,-176.405	1/1:52:0,51,0:0:0:51,0:1805,0:-162.045,-15.3525,0,-162.045,-15.3525,-162.045	1/2:41:0,22,19:0:0:22,19:788,677:-118.915,-55.0644,-48.4417,-64.1498,0,-58.4302	1/2:36:1,15,20:1:23:15,20:532,684:-96.4195,-53.5736,-50.8218,-41.4957,0,-37.2363	1/1:39:0,39,0:0:0:39,0:1385,0:-124.685,-11.7402,0,-124.685,-11.7402,-124.685	1/1:84:0,84,0:0:0:84,0:2959,0:-265.615,-25.2865,0,-265.615,-25.2865,-265.615	1/1:29:0,29,0:0:0:29,0:1027,0:-92.2419,-8.72987,0,-92.2419,-8.72987,-92.2419	1/1:64:0,64,0:0:0:64,0:2276,0:-204.707,-19.2659,0,-204.707,-19.2659,-204.707	1/1:38:0,38,0:0:0:38,0:1355,0:-121.94,-11.4391,0,-121.94,-11.4391,-121.94	1/1:21:0,21,0:0:0:21,0:743,0:-66.9512,-6.32163,0,-66.9512,-6.32163,-66.9512	1/1:28:0,28,0:0:0:28,0:996,0:-89.3464,-8.42884,0,-89.3464,-8.42884,-89.3464	1/2:65:0,41,24:0:0:41,24:1468,860:-188.951,-69.5784,-57.2361,-119.671,0,-112.446	1/2:24:0,11,13:0:0:11,13:388,442:-67.4663,-35.8898,-32.5784,-31.922,0,-28.0086	1/2:19:0,7,12:0:0:7,12:252,425:-54.8381,-34.43,-32.3228,-20.7623,0,-17.1499	1/1:37:0,37,0:0:0:37,0:1316,0:-118.331,-11.1381,0,-118.331,-11.1381,-118.331	1/2:24:0,12,12:0:0:12,12:428,427:-69.5647,-34.7742,-31.1618,-35.0921,0,-31.4798	1/1:17:0,16,1:0:0:16,1:558,25:-49.5351,-4.81648,0,-47.629,-2.65878,-47.328	1/2:65:0,33,32:0:0:33,32:1142,1113:-181.204,-88.5798,-78.6458,-92.9099,0,-83.277	1/2:26:0,18,8:0:0:18,8:648,281:-75.737,-23.0643,-17.6457,-53.0246,0,-50.6163	1/1:63:0,63,0:0:0:63,0:2244,0:-202.11,-18.9649,0,-202.11,-18.9649,-202.11	1/1:18:0,18,0:0:0:18,0:648,0:-58.6073,-5.41854,0,-58.6073,-5.41854,-58.6073	1/2:47:0,19,28:0:0:19,28:676,975:-134.087,-79.0736,-73.354,-55.3648,0,-46.9359	1/1:34:0,34,0:0:0:34,0:1195,0:-107.661,-10.235,0,-107.661,-10.235,-107.661	1/1:139:0,138,1:0:0:138,1:4882,25:-438.729,-41.5421,0,-436.784,-39.3459,-436.483	1/1:97:0,97,0:0:0:97,0:3448,0:-310.091,-29.1999,0,-310.091,-29.1999,-310.091	1/1:10:0,10,0:0:0:10,0:344,0:-31.2502,-3.0103,0,-31.2502,-3.0103,-31.2502	1/1:96:0,96,0:0:0:96,0:3396,0:-305.559,-28.8989,0,-305.559,-28.8989,-305.559	1/1:76:0,76,0:0:0:76,0:2665,0:-239.202,-22.8783,0,-239.202,-22.8783,-239.202	1/2:82:0,39,43:0:0:39,43:1386,1519:-234.925,-122.186,-110.446,-113.033,0,-100.088	1/1:4:0,4,0:0:0:4,0:144,0:-13.2947,-1.20412,0,-13.2947,-1.20412,-13.2947	1/1:7:0,7,0:0:0:7,0:248,0:-22.6329,-2.10721,0,-22.6329,-2.10721,-22.6329	1/1:5:0,5,0:0:0:5,0:180,0:-16.5048,-1.50515,0,-16.5048,-1.50515,-16.5048	1/1:4:0,4,0:0:0:4,0:144,0:-13.2801,-1.20412,0,-13.2801,-1.20412,-13.2801	1/1:6:0,6,0:0:0:6,0:198,0:-18.0789,-1.80618,0,-18.0789,-1.80618,-18.0789	1/1:94:0,94,0:0:0:94,0:3315,0:-298.42,-28.2968,0,-298.42,-28.2968,-298.42	1/1:107:0,107,0:0:0:107,0:3813,0:-342.357,-32.2102,0,-342.357,-32.2102,-342.357	1/2:22:0,7,15:0:0:7,15:248,534:-63.7719,-43.6328,-41.5256,-20.4925,0,-15.977	2/2:4:0,0,4:0:0:0,4:0,133:-12.2268,-12.2268,-12.2268,-1.20412,-1.20412,0	1/1:51:0,51,0:0:0:51,0:1783,0:-160.14,-15.3525,0,-160.14,-15.3525,-160.14	1/1:19:0,19,0:0:0:19,0:661,0:-59.716,-5.71957,0,-59.716,-5.71957,-59.716	1/1:104:0,104,0:0:0:104,0:3662,0:-328.797,-31.3071,0,-328.797,-31.3071,-328.797	1/1:23:0,23,0:0:0:23,0:819,0:-73.9532,-6.92369,0,-73.9532,-6.92369,-73.9532	1/2:25:0,12,13:0:0:12,13:432,459:-72.6198,-37.4001,-33.7878,-35.5747,0,-31.6613	1/1:59:0,58,0:0:0:58,0:2072,0:-186.359,-17.4597,0,-186.359,-17.4597,-186.359	1/2:81:0,44,37:0:0:44,37:1549,1304:-231.179,-105.868,-92.6229,-125.603,0,-114.465	1/1:94:0,94,0:0:0:94,0:3329,0:-298.925,-28.2968,0,-298.925,-28.2968,-298.925	1/1:51:0,51,0:0:0:51,0:1813,0:-162.736,-15.3525,0,-162.736,-15.3525,-162.736	1/1:54:0,54,0:0:0:54,0:1922,0:-172.867,-16.2556,0,-172.867,-16.2556,-172.867	1/1:88:0,88,0:0:0:88,0:3113,0:-280.152,-26.4906,0,-280.152,-26.4906,-280.152	1/2:6:0,5,1:0:0:5,1:176,36:-17.577,-3.26578,-1.76063,-14.6671,0,-14.366	1/1:81:0,81,0:0:0:81,0:2866,0:-257.116,-24.3834,0,-257.116,-24.3834,-257.116	1/1:19:0,19,0:0:0:19,0:667,0:-60.2536,-5.71957,0,-60.2536,-5.71957,-60.2536	1/1:9:0,9,0:0:0:9,0:315,0:-28.4365,-2.70927,0,-28.4365,-2.70927,-28.4365	1/2:44:0,32,12:0:0:32,12:1139,406:-125.729,-33.0382,-23.4052,-93.032,0,-89.4197	1/1:15:0,15,0:0:0:15,0:512,0:-46.293,-4.51545,0,-46.293,-4.51545,-46.293	2/2:1:0,0,1:0:0:0,1:0,36:-3.56681,-3.56681,-3.56681,-0.30103,-0.30103,0	1/2:15:0,8,7:0:0:8,7:287,252:-44.0792,-20.7204,-18.3121,-23.7161,0,-21.6089	1/1:38:0,38,0:0:0:38,0:1335,0:-120.215,-11.4391,0,-120.215,-11.4391,-120.215	1/2:112:0,56,56:0:0:56,56:1989,1985:-321.365,-159.644,-142.786,-162.015,0,-145.157	1/1:5:0,5,0:0:0:5,0:180,0:-16.5342,-1.50515,0,-16.5342,-1.50515,-16.5342	1/1:51:0,51,0:0:0:51,0:1811,0:-163.088,-15.3525,0,-163.088,-15.3525,-163.088	1/2:87:0,42,44:0:0:42,44:1493,1567:-247.635,-126.068,-113.424,-121.507,0,-108.261	1/1:42:0,40,2:0:0:40,2:1432,70:-128.526,-12.0412,0,-122.867,-6.0346,-122.265	1/1:39:0,39,0:0:0:39,0:1362,0:-122.691,-11.7402,0,-122.691,-11.7402,-122.691	1/2:48:0,22,26:0:0:22,26:758,907:-134.265,-72.737,-66.1144,-61.8712,0,-54.0444	1/1:45:0,45,0:0:0:45,0:1599,0:-144.056,-13.5464,0,-144.056,-13.5464,-144.056	1/1:11:0,11,0:0:0:11,0:384,0:-34.8376,-3.31133,0,-34.8376,-3.31133,-34.8376	1/1:27:0,27,0:0:0:27,0:962,0:-86.4661,-8.12781,0,-86.4661,-8.12781,-86.4661	1/2:71:1,36,34:1:36:36,34:1259,1210:-194.568,-92.9164,-85.0171,-98.945,0,-91.6477	1/1:13:0,13,0:0:0:13,0:464,0:-42.0683,-3.91339,0,-42.0683,-3.91339,-42.0683	1/1:66:0,66,0:0:0:66,0:2333,0:-209.38,-19.868,0,-209.38,-19.868,-209.38	1/2:31:0,18,13:0:0:18,13:635,456:-88.5295,-36.9551,-31.5366,-51.923,0,-48.0096	1/1:65:0,65,0:0:0:65,0:2277,0:-204.376,-19.567,0,-204.376,-19.567,-204.376	1/1:57:0,57,0:0:0:57,0:2035,0:-183.227,-17.1587,0,-183.227,-17.1587,-183.227	1/1:62:0,62,0:0:0:62,0:2200,0:-197.211,-18.6639,0,-197.211,-18.6639,-197.211	1/1:24:0,24,0:0:0:24,0:851,0:-76.6423,-7.22472,0,-76.6423,-7.22472,-76.6423	1/1:2:0,2,0:0:0:2,0:68,0:-6.16997,-0.60206,0,-6.16997,-0.60206,-6.16997	1/1:29:0,29,0:0:0:29,0:1036,0:-93.3005,-8.72987,0,-93.3005,-8.72987,-93.3005	1/2:45:0,21,24:0:0:21,24:732,826:-125.139,-65.9425,-59.6209,-59.4266,0,-52.2019	1/1:82:0,82,0:0:0:82,0:2926,0:-263.195,-24.6845,0,-263.195,-24.6845,-263.195	1/1:67:0,67,0:0:0:67,0:2374,0:-213.154,-20.169,0,-213.154,-20.169,-213.154	1/1:12:0,12,0:0:0:12,0:432,0:-39.0039,-3.61236,0,-39.0039,-3.61236,-39.0039	1/2:36:0,17,19:0:0:17,19:612,647:-101.706,-51.8842,-46.7667,-50.1695,0,-44.4499	1/1:56:0,55,1:0:0:55,1:1955,36:-175.648,-16.5567,0,-173.081,-13.6701,-172.78	1/2:20:0,14,6:0:0:14,6:500,216:-58.419,-17.7631,-13.5487,-41.0118,0,-39.2056	1/1:34:0,34,0:0:0:34,0:1201,0:-107.693,-10.235,0,-107.693,-10.235,-107.693	1/1:25:0,25,0:0:0:25,0:900,0:-81.1054,-7.52575,0,-81.1054,-7.52575,-81.1054	1/1:14:0,14,0:0:0:14,0:495,0:-44.8223,-4.21442,0,-44.8223,-4.21442,-44.8223	1/2:61:0,34,27:0:0:34,27:1197,952:-173.819,-76.7937,-66.5586,-97.375,0,-89.2472	1/2:20:0,6,14:0:0:6,14:212,471:-55.2149,-37.9735,-36.1673,-17.5879,0,-13.3735	1/1:28:0,28,0:0:0:28,0:991,0:-89.4405,-8.42884,0,-89.4405,-8.42884,-89.4405	1/1:33:0,33,0:0:0:33,0:1175,0:-105.669,-9.93399,0,-105.669,-9.93399,-105.669
chr02	9881621	.	TCG	CCA,CCG	360824	PASS	AB=0.468447,0.530505;ABP=36.035,33.8789;AC=159,29;AF=0.845745,0.154255;AN=188;AO=11648,2039;CIGAR=1X1M1X,1X2M;DP=13711;DPB=13733.3;DPRA=0,0.925295;EPP=25296.3,4430.64;EPPR=0;GTI=0;LEN=3,1;MEANALT=1.64894,2.18919;MQM=53.7856,45.0937;MQMR=0;NS=94;NUMALT=2;ODDS=3.77045;PAIRED=0,0;PAIREDR=0;PAO=43,24;PQA=1402,734;PQR=0;PRO=0;QA=395159,69964;QR=0;RO=0;RPL=5363,953;RPP=161.487,21.8485;RPPR=0;RPR=6285,1086;RUN=1,1;SAF=5363,953;SAP=161.487,21.8485;SAR=6285,1086;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:85:0,85,0:0:0:85,0:2914,0:-261.947,-25.5876,0,-261.947,-25.5876,-261.947	1/1:195:0,195,0:0:0:195,0:6745,0:-605.767,-58.7009,0,-605.767,-58.7009,-605.767	1/1:172:0,172,0:0:0:172,0:5957,0:-535.352,-51.7772,0,-535.352,-51.7772,-535.352	1/1:249:0,248,1:0:0:248,1:8345,36:-747.201,-74.6554,0,-744.266,-71.3608,-743.965	1/2:78:0,44,34:0:0:44,34:1501,1186:-213.227,-91.6223,-78.377,-121.94,0,-111.705	1/2:69:0,24,45:0:0:24,45:831,1531:-185.223,-117.765,-110.54,-67.7963,0,-54.25	1/1:149:0,148,0:0:0:148,0:5018,0:-447.82,-44.5524,0,-447.82,-44.5524,-447.82	1/1:218:0,216,0:0:0:216,0:7379,0:-661.161,-65.0225,0,-661.161,-65.0225,-661.161	1/1:152:0,152,0:0:0:152,0:5219,0:-467.49,-45.7566,0,-467.49,-45.7566,-467.49	1/1:165:0,165,0:0:0:165,0:5535,0:-495.86,-49.67,0,-495.86,-49.67,-495.86	1/1:131:0,129,0:0:0:129,0:4304,0:-385.419,-38.8329,0,-385.419,-38.8329,-385.419	1/1:121:0,120,0:0:0:120,0:4092,0:-367.352,-36.1236,0,-367.352,-36.1236,-367.352	1/1:137:0,137,0:0:0:137,0:4694,0:-421.543,-41.2411,0,-421.543,-41.2411,-421.543	1/2:129:0,73,56:0:0:73,56:2488,1921:-350.224,-148.663,-126.688,-201.836,0,-184.978	1/2:126:0,65,61:0:0:65,61:2209,2089:-340.781,-162.54,-142.973,-178.574,0,-160.212	1/2:89:0,50,39:0:0:50,39:1669,1346:-239.072,-104.528,-89.4766,-134.875,0,-123.135	1/1:120:0,120,0:0:0:120,0:4069,0:-365.838,-36.1236,0,-365.838,-36.1236,-365.838	1/2:109:0,53,55:0:0:53,55:1787,1853:-285.19,-141.488,-125.533,-143.765,0,-127.208	1/1:107:0,107,0:0:0:107,0:3611,0:-324.007,-32.2102,0,-324.007,-32.2102,-324.007	1/2:407:0,183,222:0:0:183,222:6264,7707:-1106.45,-599.793,-544.705,-506.688,0,-439.859	1/2:200:0,111,89:0:0:111,89:3784,3079:-545.93,-239.909,-206.495,-306.298,0,-279.506	1/1:122:0,122,0:0:0:122,0:4092,0:-366.767,-36.7257,0,-366.767,-36.7257,-366.767	1/1:182:0,181,0:0:0:181,0:6215,0:-558.001,-54.4864,0,-558.001,-54.4864,-558.001	1/2:194:0,85,109:0:0:85,109:2879,3774:-525.985,-293.666,-268.079,-232.654,0,-199.842	1/1:100:0,100,0:0:0:100,0:3390,0:-303.497,-30.103,0,-303.497,-30.103,-303.497	1/1:355:0,354,0:0:0:354,0:11953,0:-1067.11,-106.565,0,-1067.11,-106.565,-1067.11	1/1:313:0,313,0:0:0:313,0:10642,0:-954.365,-94.2224,0,-954.365,-94.2224,-954.365	1/1:64:0,64,0:0:0:64,0:2191,0:-196.63,-19.2659,0,-196.63,-19.2659,-196.63	1/1:420:0,419,0:0:0:419,0:14296,0:-1279.95,-126.132,0,-1279.95,-126.132,-1279.95	1/1:200:0,198,0:0:0:198,0:6606,0:-592.231,-59.6039,0,-592.231,-59.6039,-592.231	1/2:203:0,107,96:0:0:107,96:3648,3306:-550.497,-256.113,-223.902,-294.719,0,-265.82	1/1:17:0,17,0:0:0:17,0:569,0:-51.1296,-5.11751,0,-51.1296,-5.11751,-51.1296	1/1:24:0,24,0:0:0:24,0:817,0:-73.6238,-7.22472,0,-73.6238,-7.22472,-73.6238	1/1:2:0,2,0:0:0:2,0:72,0:-6.81819,-0.60206,0,-6.81819,-0.60206,-6.81819	1/2:22:0,10,12:0:0:10,12:343,418:-60.0002,-32.1762,-29.1659,-27.8045,0,-24.1921	1/1:12:0,12,0:0:0:12,0:398,0:-36.0348,-3.61236,0,-36.0348,-3.61236,-36.0348	1/1:357:0,356,0:0:0:356,0:11736,0:-1051.64,-107.167,0,-1051.64,-107.167,-1051.64	1/1:191:0,190,1:0:0:190,1:6391,35:-573.309,-57.1957,0,-570.731,-54.2977,-570.43	1/2:108:0,53,55:0:0:53,55:1834,1909:-298.371,-149.734,-133.78,-148.685,0,-132.128	1/2:6:0,4,2:0:0:4,2:139,71:-16.7704,-5.49752,-4.2934,-11.2622,0,-10.6601	1/1:192:0,192,0:0:0:192,0:6549,0:-588.237,-57.7978,0,-588.237,-57.7978,-588.237	1/1:82:0,82,0:0:0:82,0:2756,0:-247.114,-24.6845,0,-247.114,-24.6845,-247.114	1/1:209:0,209,0:0:0:209,0:7026,0:-630.315,-62.9153,0,-630.315,-62.9153,-630.315	1/1:144:0,144,0:0:0:144,0:4850,0:-434.796,-43.3483,0,-434.796,-43.3483,-434.796	1/2:99:0,51,48:0:0:51,48:1706,1604:-261.82,-124.555,-109.202,-137.592,0,-123.143	1/1:138:0,138,0:0:0:138,0:4621,0:-413.751,-41.5421,0,-413.751,-41.5421,-413.751	1/2:168:0,67,101:0:0:67,101:2282,3368:-441.732,-256.942,-236.773,-185.12,0,-154.716	1/1:174:0,174,0:0:0:174,0:5950,0:-533.211,-52.3792,0,-533.211,-52.3792,-533.211	1/1:151:0,151,0:0:0:151,0:5154,0:-461.498,-45.4555,0,-461.498,-45.4555,-461.498	1/1:254:0,254,0:0:0:254,0:8591,0:-768.218,-76.4616,0,-768.218,-76.4616,-768.218	1/1:258:0,258,0:0:0:258,0:8725,0:-780.083,-77.6657,0,-780.083,-77.6657,-780.083	1/2:13:0,5,8:0:0:5,8:180,271:-35.8244,-21.1548,-19.6496,-14.9698,0,-12.5616	1/1:281:0,280,0:0:0:280,0:9660,0:-867.361,-84.2884,0,-867.361,-84.2884,-867.361	1/1:42:0,42,0:0:0:42,0:1441,0:-128.986,-12.6433,0,-128.986,-12.6433,-128.986	1/1:19:0,19,0:0:0:19,0:652,0:-58.9455,-5.71957,0,-58.9455,-5.71957,-58.9455	1/2:169:0,60,109:0:0:60,109:2030,3715:-452.648,-288.487,-270.426,-164.495,0,-131.682	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chr02	9881626	.	G	C	41836.9	PASS	AB=0.533065;ABP=38.3353;AC=29;AF=0.154255;AN=188;AO=1995;CIGAR=1X;DP=13291;DPB=13291;DPRA=0.991727;EPP=4335.1;EPPR=24518.9;GTI=0;LEN=1;MEANALT=1.05714;MQM=45.2952;MQMR=53.9818;NS=94;NUMALT=1;ODDS=4.72103;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69914;QR=394020;RO=11290;RPL=905;RPP=40.2628;RPPR=270.819;RPR=1090;RUN=1;SAF=905;SAP=40.2628;SAR=1090;SRF=5055;SRP=270.819;SRR=6235;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:84:84,0:84:2935:0:0:0,-25.2865,-263.665	0/0:197:197,0:197:6955:0:0:0,-59.3029,-624.129	0/0:175:175,0:175:6127:0:0:0,-52.6802,-550.204	0/0:236:236,0:236:8241:0:0:0,-71.0431,-737.217	0/1:78:45,33:45:1587:33:1180:-77.0873,0,-119.404	0/1:64:23,41:23:812:41:1464:-103.224,0,-54.0397	0/0:142:142,0:142:4907:0:0:0,-42.7463,-438.257	0/0:223:223,0:223:7855:0:0:0,-67.1297,-702.838	0/0:156:156,0:156:5488:0:0:0,-46.9607,-490.836	0/0:157:156,0:156:5397:0:0:0,-46.9607,-482.46	0/0:130:130,0:130:4537:0:0:0,-39.1339,-405.411	0/0:125:125,0:125:4380:0:0:0,-37.6287,-393.479	0/0:144:144,0:144:5029:0:0:0,-43.3483,-451.389	0/1:126:72,54:72:2492:54:1908:-124.786,0,-186.126	0/1:125:64,61:64:2224:61:2115:-141.972,0,-161.517	0/1:86:48,38:48:1656:38:1330:-88.3783,0,-122.805	0/0:119:119,0:119:4194:0:0:0,-35.8226,-376.867	0/1:104:53,51:53:1834:51:1800:-120.997,0,-132.144	0/0:106:106,0:106:3731:0:0:0,-31.9092,-334.511	0/1:397:181,216:181:6409:216:7602:-533.605,0,-455.191	0/1:192:108,84:108:3757:84:2939:-193.879,0,-279.509	0/0:114:114,0:114:4027:0:0:0,-34.3174,-360.707	0/0:178:176,0:176:6118:0:0:0,-52.9813,-549.233	0/1:191:81,110:81:2829:110:3905:-276.422,0,-196.078	0/0:97:97,0:97:3368:0:0:0,-29.1999,-301.054	0/0:335:335,0:335:11747:0:0:0,-100.845,-1049.04	0/0:298:298,0:298:10442:0:0:0,-89.7069,-935.835	0/0:65:65,0:65:2264:0:0:0,-19.5669,-203.268	0/0:401:398,1:398:13864:1:21:0,-118.289,-1237.97	0/0:196:196,0:196:6835:0:0:0,-59.0019,-611.67	0/1:200:103,97:103:3607:97:3393:-229.093,0,-262.902	0/0:15:15,0:15:518:0:0:0,-4.51545,-46.5361	0/0:24:24,0:24:825:0:0:0,-7.22472,-74.1494	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81819	0/1:23:11,12:11:378:12:424:-29.4793,0,-27.3722	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.7214	0/0:328:328,0:328:11356:0:0:0,-98.7378,-1017	0/0:180:179,1:179:6245:1:36:0,-50.9392,-557.175	0/1:103:50,53:50:1744:53:1862:-131.672,0,-125.853	0/1:7:5,2:5:168:2:72:-4.39015,0,-13.3268	0/0:177:177,0:177:6158:0:0:0,-53.2823,-552.106	0/0:75:75,0:75:2638:0:0:0,-22.5772,-236.592	0/0:200:200,0:200:6943:0:0:0,-60.206,-622.214	0/0:140:140,0:140:4918:0:0:0,-42.1442,-440.792	0/1:91:46,45:46:1609:45:1501:-101.777,0,-116.681	0/0:124:124,0:124:4324:0:0:0,-37.3277,-386.803	0/1:163:71,92:71:2519:92:3242:-220.387,0,-177.172	0/0:167:167,0:167:5834:0:0:0,-50.272,-522.456	0/0:144:144,0:144:5018:0:0:0,-43.3483,-449.549	0/0:245:245,0:245:8589:0:0:0,-73.7523,-765.959	0/0:240:240,0:240:8345:0:0:0,-72.2472,-745.32	0/1:12:5,7:5:180:7:248:-17.7226,0,-12.9108	0/0:277:277,0:277:9780:0:0:0,-83.3853,-877.843	0/0:42:42,0:42:1460:0:0:0,-12.6433,-130.687	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.4945	0/1:164:56,108:56:1971:108:3728:-270.452,0,-127.8	0/0:62:62,0:62:2195:0:0:0,-18.6639,-196.677	0/1:11:6,5:6:203:5:180:-12.8592,0,-15.2493	0/1:14:4,10:4:140:10:360:-23.3376,0,-8.70105	0/0:108:108,0:108:3753:0:0:0,-32.5112,-337.372	0/1:182:86,96:86:2991:96:3281:-225.957,0,-213.745	0/0:14:14,0:14:475:0:0:0,-4.21442,-43.01	0/0:196:195,1:195:6755:1:36:0,-55.4046,-600.605	0/1:181:82,99:82:2840:99:3495:-252.008,0,-200.774	0/0:108:102,6:102:3533:6:201:0,-15.0872,-299.608	0/0:93:93,0:93:3270:0:0:0,-27.9958,-292.53	0/1:226:87,138:87:3063:138:4831:-349.386,0,-206.846	0/0:143:141,2:141:4891:2:68:0,-36.593,-430.2	0/0:77:77,0:77:2687:0:0:0,-23.1793,-240.939	0/0:140:140,0:140:4890:0:0:0,-42.1442,-439.149	0/1:159:76,83:76:2579:83:2855:-198.162,0,-182.385	0/0:25:25,0:25:861:0:0:0,-7.52575,-77.5595	0/0:181:181,0:181:6334:0:0:0,-54.4864,-567.3	0/1:123:71,52:71:2488:52:1842:-118.365,0,-186.102	0/0:246:246,0:246:8582:0:0:0,-74.0534,-769.889	0/0:250:250,0:250:8676:0:0:0,-75.2575,-776.752	0/0:147:147,0:147:5160:0:0:0,-44.2514,-463.324	0/0:160:160,0:160:5583:0:0:0,-48.1648,-500.979	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.622	0/0:175:174,1:174:6040:1:36:0,-49.4341,-538.275	0/1:169:72,97:72:2505:97:3434:-249.336,0,-174.31	0/0:305:305,0:305:10571:0:0:0,-91.8141,-944.922	0/0:168:168,0:168:5816:0:0:0,-50.573,-520.408	0/0:97:97,0:97:3412:0:0:0,-29.1999,-305.79	0/1:147:77,70:77:2663:70:2472:-169.615,0,-194.576	0/0:203:203,0:203:7041:0:0:0,-61.1091,-630.349	0/1:91:44,47:44:1524:47:1664:-116.7,0,-109.71	0/0:101:101,0:101:3508:0:0:0,-30.404,-314.176	0/0:93:93,0:93:3277:0:0:0,-27.9958,-293.812	0/0:88:88,0:88:3064:0:0:0,-26.4906,-274.631	0/1:152:78,74:78:2708:74:2591:-176.184,0,-197.551	0/1:139:31,108:31:1083:108:3798:-285.151,0,-55.5097	0/0:101:101,0:101:3502:0:0:0,-30.404,-313.257	0/0:189:189,0:189:6593:0:0:0,-56.8947,-591.066
chr02	10054294	.	C	T	163543	PASS	AB=0.501144;ABP=3.04011;AC=158;AF=0.849462;AN=186;AO=7409;CIGAR=1X;DP=8731;DPB=8731;DPRA=0;EPP=16074.1;EPPR=2869.35;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.9899;MQMR=59.8523;NS=93;NUMALT=1;ODDS=3.15697;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=265257;QR=47198;RO=1320;RPL=0;RPP=16091.4;RPPR=2869.35;RPR=7409;RUN=1;SAF=7407;SAP=16074.1;SAR=2;SRF=1320;SRP=2869.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1304:-117.659,-11.1381,0	1/1:131:1,130:1:36:130:4645:-414.613,-35.8367,0	1/1:75:1,74:1:36:74:2644:-234.605,-18.979,0	1/1:171:0,171:0:0:171:6144:-553.056,-51.4761,0	0/1:66:34,32:34:1200:32:1133:-82.4087,0,-88.4343	0/1:82:39,43:39:1391:43:1548:-114.929,0,-100.673	1/1:114:0,114:0:0:114:4081:-367.474,-34.3174,0	1/1:120:0,120:0:0:120:4296:-386.817,-36.1236,0	1/1:104:0,104:0:0:104:3724:-335.361,-31.3071,0	1/1:75:0,75:0:0:75:2673:-240.814,-22.5773,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:92:0,92:0:0:92:3308:-297.937,-27.6948,0	1/1:112:0,112:0:0:112:3994:-359.649,-33.7154,0	0/1:95:57,38:57:2027:38:1364:-94.4629,0,-154.087	0/1:88:52,36:52:1868:36:1296:-90.4533,0,-141.908	0/1:64:32,32:32:1135:32:1142:-83.8232,0,-83.1688	1/1:101:0,101:0:0:101:3609:-325.015,-30.404,0	0/1:91:52,39:52:1872:39:1404:-99.2655,0,-141.355	1/1:69:1,68:1:36:68:2440:-216.257,-17.1728,0	0/1:134:67,67:67:2400:67:2393:-175.288,0,-175.919	0/1:110:51,59:51:1828:59:2101:-156.244,0,-131.677	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:84:1,83:1:32:83:2984:-265.592,-22.0872,0	0/1:127:51,76:51:1836:76:2732:-207.887,0,-126.964	1/1:80:0,80:0:0:80:2833:-255.209,-24.0824,0	1/1:250:0,250:0:0:250:8979:-808.086,-75.2575,0	1/1:128:0,128:0:0:128:4588:-413.084,-38.5318,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:207:0,207:0:0:207:7425:-668.291,-62.3132,0	1/1:179:0,179:0:0:179:6388:-575.009,-53.8844,0	0/1:158:68,90:68:2428:90:3236:-243.898,0,-171.213	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:266:0,266:0:0:266:9519:-856.666,-80.074,0	1/1:149:0,149:0:0:149:5321:-479.024,-44.8535,0	0/1:90:53,37:53:1904:37:1317:-91.738,0,-144.545	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:223:0,223:0:0:223:8001:-720.107,-67.1297,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	1/1:127:0,127:0:0:127:4559:-410.475,-38.2308,0	0/1:95:53,42:53:1900:42:1512:-107.777,0,-142.68	1/1:80:0,80:0:0:80:2861:-257.725,-24.0824,0	0/1:101:56,45:56:2008:45:1612:-114.966,0,-150.589	1/1:107:0,107:0:0:107:3823:-344.266,-32.2102,0	1/1:116:0,116:0:0:116:4168:-375.293,-34.9195,0	1/1:103:0,103:0:0:103:3696:-332.841,-31.0061,0	1/1:96:0,96:0:0:96:3414:-307.472,-28.8989,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:66:0,66:0:0:66:2353:-212.028,-19.868,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:123:55,68:55:1976:68:2436:-182.469,0,-141.07	1/1:71:0,71:0:0:71:2537:-228.579,-21.3731,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	0/1:131:74,57:74:2656:57:2043:-144.706,0,-199.851	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:165:0,165:0:0:165:5891:-530.254,-49.67,0	0/1:193:86,106:86:3084:106:3804:-284.548,0,-219.77	0/1:65:6,59:6:216:59:2052:-165.378,0,-0.223562	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	0/1:141:78,63:78:2788:63:2264:-161.575,0,-208.716	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:39:0,38:0:0:38:1364:-122.847,-11.4391,0	0/1:136:71,65:71:2543:65:2328:-168.84,0,-188.18	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:70:0,70:0:0:70:2505:-225.701,-21.0721,0	0/1:79:29,50:29:1024:50:1796:-138.141,0,-68.6912	1/1:187:0,187:0:0:187:6688:-601.993,-56.2926,0	1/1:115:0,115:0:0:115:4111:-370.174,-34.6185,0	1/1:90:0,90:0:0:90:3206:-288.761,-27.0927,0	1/1:115:0,115:0:0:115:4127:-371.612,-34.6185,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:117:2,115:2:72:115:4121:-364.235,-28.3838,0	0/1:81:45,36:45:1589:36:1277:-90.8477,0,-118.915	1/1:170:3,167:3:104:167:6000:-530.4,-41.4723,0	1/1:144:1,143:1:36:143:5140:-459.141,-39.75,0	1/1:74:0,74:0:0:74:2642:-238.025,-22.2762,0	0/1:100:45,55:45:1603:55:1951:-145.757,0,-114.456	1/1:216:1,215:1:36:215:7731:-692.22,-61.4242,0	0/1:67:32,35:32:1144:35:1244:-92.0957,0,-82.9419	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	1/1:93:0,93:0:0:93:3339:-300.725,-27.9958,0	1/1:45:2,43:2:72:43:1531:-131.246,-6.70963,0	0/1:81:39,42:39:1387:42:1508:-111.631,0,-100.472	0/1:104:68,36:68:2427:36:1288:-84.9165,0,-187.378	1/1:72:0,72:0:0:72:2569:-231.458,-21.6742,0	1/1:138:0,138:0:0:138:4943:-445.019,-41.5421,0
chr02	10061983	.	T	G	186505	PASS	AB=0.425255;ABP=140.971;AC=151;AF=0.803191;AN=188;AO=6480;CIGAR=1X;DP=9065;DPB=9065;DPRA=0;EPP=1207.65;EPPR=3.4564;GTI=7;LEN=1;MEANALT=1.09574;MQM=59.8796;MQMR=59.9872;NS=94;NUMALT=1;ODDS=0.7831;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229767;QR=92025;RO=2575;RPL=895;RPP=7373.99;RPPR=1339.69;RPR=5585;RUN=1;SAF=3187;SAP=6.77553;SAR=3293;SRF=1934;SRP=1412.86;SRR=641;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1305:-117.749,-11.1381,0	1/1:93:0,93:0:0:93:3340:-300.813,-27.9958,0	1/1:87:0,87:0:0:87:3076:-277.06,-26.1896,0	1/1:103:0,103:0:0:103:3654:-329.062,-31.0061,0	0/1:51:16,35:16:564:35:1198:-92.763,0,-35.7378	0/1:28:13,15:13:468:15:536:-40.146,0,-34.0308	1/1:74:0,74:0:0:74:2634:-237.304,-22.2762,0	1/1:92:0,92:0:0:92:3270:-294.189,-27.6948,0	1/1:45:0,45:0:0:45:1593:-143.658,-13.5464,0	1/1:60:0,60:0:0:60:2124:-190.601,-18.0618,0	1/1:122:2,120:2:72:120:4253:-376.112,-29.8889,0	1/1:131:0,130:0:0:130:4625:-416.041,-39.1339,0	1/1:128:0,128:0:0:128:4547:-409.394,-38.5318,0	0/1:122:59,63:59:2107:63:2238:-164.957,0,-153.173	0/1:123:60,63:60:2144:63:2218:-162.854,0,-156.156	0/1:119:61,58:61:2184:58:2058:-149.666,0,-161.003	1/1:121:0,121:0:0:121:4310:-388.07,-36.4246,0	0/1:92:42,50:42:1499:50:1768:-131.702,0,-107.509	1/1:118:1,117:1:36:117:4137:-368.899,-31.9233,0	0/1:175:83,92:83:2969:92:3278:-242.536,0,-214.761	0/1:93:35,58:35:1248:58:2033:-155.173,0,-84.6291	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	1/1:55:0,55:0:0:55:1976:-178.114,-16.5567,0	0/1:52:26,26:26:932:26:919:-67.3722,0,-68.5453	1/1:45:0,45:0:0:45:1580:-142.484,-13.5464,0	1/1:150:1,149:1:36:149:5277:-471.437,-41.5562,0	1/1:133:1,132:1:36:132:4684:-418.115,-36.4387,0	1/1:98:0,98:0:0:98:3507:-315.831,-29.5009,0	1/1:149:0,149:0:0:149:5259:-473.447,-44.8535,0	1/1:30:0,30:0:0:30:1055:-95.26,-9.0309,0	0/1:91:44,46:44:1571:46:1648:-121.156,0,-114.228	1/1:8:0,8:0:0:8:288:-26.2658,-2.40824,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:284:277,6:277:9894:6:216:0,-65.7266,-870.616	0/1:10:1,9:1:36:9:315:-25.6691,0,-0.587975	1/1:343:0,343:0:0:343:12157:-1093.9,-103.253,0	1/1:48:0,48:0:0:48:1697:-153.01,-14.4494,0	0/1:282:222,60:222:7922:60:2135:-107.524,0,-628.114	0/0:149:145,2:145:5178:2:72:0,-37.7645,-459.333	1/1:104:0,104:0:0:104:3702:-333.377,-31.3071,0	1/1:75:0,75:0:0:75:2656:-239.285,-22.5773,0	1/1:80:0,80:0:0:80:2856:-257.275,-24.0824,0	1/1:163:1,162:1:36:162:5767:-515.5,-45.4696,0	0/1:136:65,71:65:2320:71:2521:-186.153,0,-168.12	1/1:39:0,39:0:0:39:1384:-124.841,-11.7402,0	0/1:54:23,31:23:816:31:1104:-83.415,0,-57.5061	1/1:64:0,64:0:0:64:2286:-206.001,-19.2659,0	1/1:57:0,57:0:0:57:2007:-180.896,-17.1587,0	1/1:88:0,88:0:0:88:3095:-278.776,-26.4906,0	1/1:87:0,87:0:0:87:3092:-278.505,-26.1896,0	0/0:181:175,6:175:6278:6:216:0,-34.6959,-545.32	1/1:73:0,73:0:0:73:2596:-233.887,-21.9752,0	1/1:28:0,28:0:0:28:990:-89.4124,-8.42884,0	0/0:99:97,2:97:3484:2:72:0,-22.9652,-306.934	0/1:68:38,29:38:1360:29:1025:-72.1732,0,-102.318	1/1:32:0,31:0:0:31:1062:-95.5604,-9.33193,0	0/0:129:124,5:124:4435:5:176:0,-22.6478,-383.136	0/0:117:112,5:112:4008:5:180:0,-18.6684,-344.329	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:145:71,74:71:2540:74:2600:-190.594,0,-185.202	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:72:0,72:0:0:72:2584:-232.548,-21.6742,0	0/1:91:53,38:53:1892:38:1314:-91.1593,0,-143.165	1/1:46:1,45:1:36:45:1593:-140.037,-10.2491,0	1/1:61:0,61:0:0:61:2184:-196.819,-18.3628,0	0/1:114:60,54:60:2136:54:1912:-138.037,0,-158.191	1/1:54:1,53:1:36:53:1899:-167.587,-12.6573,0	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	1/1:44:0,44:0:0:44:1550:-139.787,-13.2453,0	0/1:157:77,80:77:2743:80:2841:-208.667,0,-199.851	1/1:11:0,11:0:0:11:383:-34.8032,-3.31133,0	1/1:32:0,32:0:0:32:1109:-100.112,-9.63296,0	0/1:34:17,17:17:604:17:608:-44.817,0,-44.4556	1/1:99:0,99:0:0:99:3482:-313.555,-29.802,0	1/1:81:1,80:1:36:80:2843:-252.508,-20.7852,0	1/1:63:0,63:0:0:63:2234:-201.312,-18.9649,0	1/1:71:0,71:0:0:71:2544:-229.205,-21.3731,0	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	1/1:97:1,95:1:36:95:3397:-302.339,-25.6604,0	0/1:54:34,20:34:1211:20:696:-46.7039,0,-93.0399	1/1:140:0,140:0:0:140:4990:-449.25,-42.1442,0	1/1:175:1,173:1:27:173:6129:-548.967,-49.9943,0	1/1:77:0,77:0:0:77:2736:-246.48,-23.1793,0	0/1:140:60,80:60:2144:80:2847:-214.321,0,-151.084	1/1:197:1,196:1:36:196:6928:-619.992,-55.7072,0	0/1:77:42,35:42:1504:35:1256:-90.1626,0,-112.475	1/1:189:0,189:0:0:189:6648:-598.365,-56.8947,0	1/1:128:0,128:0:0:128:4515:-406.5,-38.5318,0	1/1:64:0,64:0:0:64:2263:-203.87,-19.2659,0	0/1:416:354,62:354:12651:62:2182:-71.4157,0,-1013.19	0/1:119:76,43:76:2724:43:1536:-102.711,0,-209.58	1/1:64:1,63:1:36:63:2228:-197.162,-15.6676,0	1/1:213:0,212:0:0:212:7522:-676.663,-63.8184,0
chr02	10567131	.	CCA	ACA,CTG	161262	PASS	AB=0.50347,0.490657;ABP=3.20623,4.43051;AC=158,30;AF=0.840426,0.159574;AN=188;AO=4839,930;CIGAR=1X2M,1M2X;DP=5802;DPB=5856.67;DPRA=31.1828,1.11622;EPP=5.02471,7.5307;EPPR=3.73412;GTI=1;LEN=1,2;MEANALT=1.65591,2.23529;MQM=59.9366,59.2129;MQMR=60;NS=94;NUMALT=2;ODDS=0.349171;PAIRED=0,0;PAIREDR=0;PAO=41.5,40.5;PQA=1455,0;PQR=0;PRO=40.5;QA=173100,32517;QR=100;RO=3;RPL=4839,930;RPP=10510.8,2022.48;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=2386,487;SAP=5.02471,7.5307;SAR=2453,443;SRF=1;SRP=3.73412;SRR=2;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:43:0,42,0:0:0:42,0:1504,0:-134.962,-12.6433,0,-134.962,-12.6433,-134.962	1/1:70:0,70,0:0:0:70,0:2512,0:-225.917,-21.0721,0,-225.917,-21.0721,-225.917	1/1:71:0,71,0:0:0:71,0:2524,0:-227.361,-21.3731,0,-227.361,-21.3731,-227.361	1/2:27:0,14,13:0:0:14,13:504,442:-77.2574,-36.1256,-31.9112,-41.4278,0,-37.5144	1/2:28:0,12,15:0:0:12,15:428,529:-78.0632,-43.1688,-39.5564,-34.9883,0,-30.4728	1/1:57:0,57,0:0:0:57,0:2024,0:-182.43,-17.1587,0,-182.43,-17.1587,-182.43	1/1:73:0,71,2:0:0:71,2:2534,72:-227.801,-21.3731,0,-221.927,-15.2889,-221.324	1/1:50:0,49,0:0:0:49,0:1740,0:-156.342,-14.7505,0,-156.342,-14.7505,-156.342	1/1:40:0,40,0:0:0:40,0:1417,0:-127.825,-12.0412,0,-127.825,-12.0412,-127.825	1/1:77:0,76,0:0:0:76,0:2710,0:-243.783,-22.8783,0,-243.783,-22.8783,-243.783	1/1:148:0,148,0:0:0:148,0:5316,0:-478.154,-44.5524,0,-478.154,-44.5524,-478.154	1/1:111:0,111,0:0:0:111,0:3985,0:-358.6,-33.4143,0,-358.6,-33.4143,-358.6	1/2:93:0,51,42:0:0:51,42:1828,1453:-267.474,-118.38,-103.027,-149.446,0,-136.803	1/2:107:0,56,50:0:0:56,50:1994,1763:-306.061,-143.54,-126.682,-162.515,0,-147.464	1/2:120:0,62,58:0:0:62,58:2205,2036:-345.516,-165.823,-147.159,-179.929,0,-162.469	1/1:76:0,74,0:0:0:74,0:2644,0:-237.813,-22.2762,0,-237.813,-22.2762,-237.813	1/2:58:0,32,26:0:0:32,26:1143,890:-165.663,-72.4684,-62.8355,-93.4291,0,-85.6023	1/1:64:1,63,0:1:30:63,0:2259,0:-200.454,-16.2664,0,-200.755,-18.9649,-203.153	1/2:64:0,32,32:0:0:32,32:1148,1112:-184.394,-90.7497,-81.1167,-93.9969,0,-84.3639	1/2:81:0,46,33:0:0:46,33:1648,1117:-225.022,-90.6047,-76.7574,-134.516,0,-124.582	1/1:24:0,24,0:0:0:24,0:857,0:-77.4514,-7.22472,0,-77.4514,-7.22472,-77.4514	1/1:40:0,40,0:0:0:40,0:1421,0:-128.185,-12.0412,0,-128.185,-12.0412,-128.185	1/2:38:0,16,22:0:0:16,22:562,774:-109.019,-63.2814,-58.4649,-46.0333,0,-39.4107	1/1:49:0,49,0:0:0:49,0:1756,0:-158.203,-14.7505,0,-158.203,-14.7505,-158.203	1/1:140:0,140,0:0:0:140,0:5005,0:-450.588,-42.1442,0,-450.588,-42.1442,-450.588	1/1:85:0,85,0:0:0:85,0:3030,0:-272.797,-25.5876,0,-272.797,-25.5876,-272.797	1/1:62:0,62,0:0:0:62,0:2202,0:-198.385,-18.6639,0,-198.385,-18.6639,-198.385	1/1:98:0,97,0:0:0:97,0:3465,0:-311.721,-29.1999,0,-311.721,-29.1999,-311.721	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1529,-9.0309,0,-97.1529,-9.0309,-97.1529	1/2:43:0,26,16:0:0:26,16:921,554:-120.033,-45.0046,-37.1778,-75.0188,0,-70.2023	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:282:0,280,0:0:0:280,0:9982,0:-897.975,-84.2884,0,-897.975,-84.2884,-897.975	1/1:23:0,23,0:0:0:23,0:828,0:-74.7866,-6.92369,0,-74.7866,-6.92369,-74.7866	1/2:65:0,27,38:0:0:27,38:968,1340:-188.409,-109.455,-101.328,-79.3096,0,-67.8704	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:48:0,48,0:0:0:48,0:1716,0:-154.725,-14.4494,0,-154.725,-14.4494,-154.725	1/1:64:0,64,0:0:0:64,0:2300,0:-207.256,-19.2659,0,-207.256,-19.2659,-207.256	1/1:74:0,74,0:0:0:74,0:2648,0:-238.567,-22.2762,0,-238.567,-22.2762,-238.567	1/1:114:0,114,0:0:0:114,0:4092,0:-368.405,-34.3174,0,-368.405,-34.3174,-368.405	1/2:122:0,57,65:0:0:57,65:2039,2271:-351.221,-184.953,-167.794,-166.564,0,-146.997	1/1:34:0,34,0:0:0:34,0:1219,0:-110.017,-10.235,0,-110.017,-10.235,-110.017	1/2:64:0,45,19:0:0:45,19:1611,676:-186.826,-55.4486,-41.9023,-131.734,0,-126.014	1/1:53:0,53,0:0:0:53,0:1904,0:-171.638,-15.9546,0,-171.638,-15.9546,-171.638	1/1:32:0,32,0:0:0:32,0:1137,0:-102.637,-9.63296,0,-102.637,-9.63296,-102.637	1/1:69:0,68,1:0:0:68,1:2421,36:-217.714,-20.47,0,-214.777,-17.1728,-214.476	1/1:47:0,47,0:0:0:47,0:1688,0:-152.193,-14.1484,0,-152.193,-14.1484,-152.193	1/2:4:0,3,1:0:0:3,1:108,32:-11.7405,-2.89828,-1.99519,-9.17208,0,-8.87105	1/1:42:0,42,0:0:0:42,0:1508,0:-135.897,-12.6433,0,-135.897,-12.6433,-135.897	1/1:20:0,19,0:0:0:19,0:680,0:-61.1875,-5.71957,0,-61.1875,-5.71957,-61.1875	1/2:4:0,1,3:0:0:1,3:36,103:-11.6477,-8.70651,-8.40548,-3.2968,0,-2.39371	1/2:57:0,32,25:0:0:32,25:1137,885:-165.053,-72.4052,-62.7722,-93.0025,0,-85.4768	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672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chr02	10768081	.	G	C	12324.8	PASS	AB=0.49668;ABP=3.15449;AC=29;AF=0.157609;AN=184;AO=751;CIGAR=1X;DP=5824;DPB=5824;DPRA=0.793394;EPP=1633.79;EPPR=11018.9;GTI=3;LEN=1;MEANALT=1;MQM=53.9547;MQMR=59.4895;NS=92;NUMALT=1;ODDS=1.88191;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26834;QR=182001;RO=5073;RPL=751;RPP=1633.79;RPPR=10932.2;RPR=0;RUN=1;SAF=0;SAP=1633.79;SAR=751;SRF=10;SRP=10932.2;SRR=5063;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.4089	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.631	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.569	0/0:144:144,0:144:5180:0:0:0,-43.3483,-466.304	0/1:30:14,16:14:504:16:576:-42.879,0,-36.6626	0/1:13:7,6:7:248:6:216:-15.7648,0,-18.733	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.783	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.361	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.401	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.872	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.983	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.112	0/0:47:47,0:47:1688:0:0:0,-14.1484,-151.828	0/1:57:31,26:31:1112:26:932:-66.9052,0,-83.2188	0/1:39:18,21:18:648:21:752:-56.2182,0,-46.9117	0/1:49:15,34:15:540:34:1211:-94.3952,0,-34.158	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.843	0/1:32:17,15:17:608:15:540:-39.1805,0,-45.0374	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:111:54,57:54:1940:57:2033:-149.066,0,-141.4	0/1:112:63,49:63:2256:49:1748:-123.537,0,-169.53	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.508	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1519	0/1:69:35,34:35:1252:34:1216:-88.6742,0,-92.2049	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.402	0/0:149:149,0:149:5336:0:0:0,-44.8535,-480.243	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.035	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1955	0/0:199:199,0:199:7140:0:0:0,-59.905,-642.481	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.367	0/1:88:51,37:51:1832:37:1313:-91.8089,0,-138.561	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:152:152,0:152:5464:0:0:0,-45.7566,-491.446	0/0:117:117,0:117:4204:0:0:0,-35.2205,-377.922	0/1:39:20,19:20:720:19:684:-49.9668,0,-53.371	.:.:.:.:.:.:.:.	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.688	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5579	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.715	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.77	0/1:56:25,31:25:896:31:1112:-83.324,0,-64.0971	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:77:48,29:48:1720:29:1016:-68.3027,0,-131.845	0/0:165:165,0:165:5924:0:0:0,-49.6699,-533.049	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.224	0/0:151:151,0:151:5436:0:0:0,-45.4555,-489.279	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.157	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.576	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:8:4,4:4:144:4:144:-10.8719,0,-10.9054	0/1:76:44,32:44:1584:32:1148:-80.5973,0,-119.882	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9033	.:.:.:.:.:.:.:.	0/1:2:1,1:1:36:1:36:-2.99521,0,-2.99621	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:77:36,41:36:1288:41:1461:-108.488,0,-93.0433	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:270:270,0:270:9672:0:0:0,-81.2781,-870.308	0/1:109:51,58:51:1809:58:2084:-154.17,0,-130.277	0/0:50:49,1:49:1760:1:36:0,-11.4583,-155.055	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.57	0/1:133:56,77:56:2012:77:2747:-206.629,0,-140.096	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0704	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2628	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:55:26,29:26:936:29:1044:-77.4384,0,-67.9995	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.307	0/1:28:14,14:14:504:14:500:-36.6434,0,-37.2586	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.483	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.468	0/0:58:58,0:58:2076:0:0:0,-17.4597,-186.93	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.828	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5341	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.851	0/1:54:26,28:26:928:28:1004:-74.1851,0,-67.5673	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.895	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.228	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.195	0/1:62:35,27:35:1256:27:946:-66.569,0,-94.6675	0/0:98:98,0:98:3496:0:0:0,-29.5009,-314.847	0/1:34:20,14:20:720:14:504:-35.3426,0,-54.8938	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.182	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.393	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:39:21,18:21:748:18:647:-46.627,0,-55.8826	0/1:53:23,30:23:828:30:1076:-81.0005,0,-58.8895	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.48	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.589
chr02	10817209	.	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chr02	10963172	.	T	G	16479.9	PASS	AB=0.50858;ABP=4.24001;AC=32;AF=0.170213;AN=188;AO=986;CIGAR=1X;DP=6383;DPB=6383;DPRA=0.883727;EPP=2144.08;EPPR=11720.3;GTI=3;LEN=1;MEANALT=1;MQM=59.999;MQMR=60;NS=94;NUMALT=1;ODDS=0.787547;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35290;QR=192806;RO=5396;RPL=986;RPP=2144.08;RPPR=11720.3;RPR=0;RUN=1;SAF=0;SAP=2144.08;SAR=986;SRF=0;SRP=11720.3;SRR=5396;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:61,1:61:2188:1:36:0,-15.0656,-193.587	0/0:57:56,1:56:1989:1:36:0,-13.5604,-175.684	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/0:108:108,0:108:3819:0:0:0,-32.5112,-343.906	0/1:48:28,20:28:1008:20:720:-50.6793,0,-76.5869	0/1:36:13,23:13:453:23:828:-64.007,0,-30.2625	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:81:78,3:78:2785:3:108:0,-14.3083,-240.814	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/1:96:47,49:47:1692:49:1756:-129.425,0,-123.668	0/1:62:33,29:33:1176:29:1031:-74.4388,0,-87.4839	0/1:61:26,35:26:936:35:1241:-93.631,0,-66.1966	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:52:23,29:23:824:29:1044:-78.6212,0,-58.8298	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/1:126:71,55:71:2556:55:1972:-139.825,0,-192.36	0/1:138:78,60:78:2804:60:2148:-152.045,0,-211.057	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:63:62,1:62:2213:1:36:0,-15.3666,-195.835	0/1:66:27,39:27:964:39:1400:-106.431,0,-67.2088	0/0:114:114,0:114:4065:0:0:0,-34.3174,-366.037	0/0:120:120,0:120:4297:0:0:0,-36.1236,-386.905	0/0:174:174,0:174:6143:0:0:0,-52.3792,-552.967	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/0:153:153,0:153:5457:0:0:0,-46.0576,-491.259	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:61:32,29:32:1140:29:1040:-75.5515,0,-84.5464	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:211:211,0:211:7568:0:0:0,-63.5173,-681.157	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/1:66:29,37:29:1044:37:1319:-99.1432,0,-74.4068	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:81:80,0:80:2876:0:0:0,-24.0824,-258.716	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:113:113,0:113:4064:0:0:0,-34.0164,-365.945	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:66:30,36:30:1065:36:1296:-97.076,0,-76.2918	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.475	0/1:73:48,25:48:1716:25:900:-59.3458,0,-132.75	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:77:77,0:77:2726:0:0:0,-23.1793,-245.581	0/0:98:98,0:98:3484:0:0:0,-29.5009,-313.771	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:98:98,0:98:3482:0:0:0,-29.5009,-313.59	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:80:34,46:34:1201:46:1644:-124.166,0,-84.3113	0/0:29:29,0:29:1021:0:0:0,-8.72987,-92.2003	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:96:45,51:45:1612:51:1814:-134.641,0,-116.471	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:80:37,43:37:1324:43:1544:-115.171,0,-95.3797	0/1:39:34,5:34:1224:5:180:-4.8119,0,-98.7269	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/1:120:51,69:51:1809:69:2484:-187.689,0,-126.966	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.839	0/0:57:57,0:57:1998:0:0:0,-17.1587,-180.09	0/1:72:35,37:35:1252:37:1322:-97.608,0,-91.3109	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:77:32,45:32:1137:45:1608:-121.831,0,-79.4577	0/0:116:116,0:116:4119:0:0:0,-34.9195,-370.892	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.638	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:74:73,1:73:2571:1:36:0,-18.6779,-228.038	0/1:57:29,28:29:1040:28:993:-72.5238,0,-76.7557	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.692	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.714	0/1:74:32,42:32:1152:42:1512:-114.098,0,-81.7139	0/0:147:147,0:147:5276:0:0:0,-44.2514,-474.974	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:129:75,54:75:2688:54:1918:-134.063,0,-203.332	0/1:93:28,65:28:996:65:2324:-181.424,0,-61.9591	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.864	0/0:113:113,0:113:4049:0:0:0,-34.0164,-364.595
chr02	10972982	.	A	G	89259.8	PASS	AB=0.339169;ABP=4263.74;AC=91;AF=0.484043;AN=188;AO=6455;CIGAR=1X;DP=19440;DPB=19440;DPRA=20.8925;EPP=14019.9;EPPR=28184.4;GTI=18;LEN=1;MEANALT=1.04301;MQM=59.8158;MQMR=42.2818;NS=94;NUMALT=1;ODDS=2.26548;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229825;QR=464875;RO=12978;RPL=6455;RPP=14019.9;RPPR=19620.5;RPR=0;RUN=1;SAF=6455;SAP=14019.9;SAR=0;SRF=1075;SRP=19620.5;SRR=11903;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:119:65,54:65:2304:54:1905:-135.827,0,-164.174	0/1:283:247,36:247:8864:36:1288:-31.0321,0,-684.892	0/1:244:145,99:145:5180:99:3490:-240.818,0,-374.538	0/1:503:268,235:268:9616:235:8405:-604.539,0,-684.53	0/1:183:163,20:163:5816:20:720:-10.0403,0,-452.685	0/1:110:87,23:87:3102:23:824:-41.37,0,-239.842	0/1:225:178,47:178:6383:47:1683:-84.0221,0,-486.221	0/1:472:348,124:348:12437:124:4430:-256.696,0,-934.929	0/1:192:112,79:112:4020:79:2799:-194.436,0,-291.953	0/1:198:152,46:152:5444:46:1652:-89.3636,0,-411.299	0/1:152:65,87:65:2320:87:3112:-234.542,0,-156.118	0/1:219:105,114:105:3743:114:4035:-297.41,0,-259.665	0/1:120:62,58:62:2208:58:2076:-150.983,0,-156.558	0/1:170:112,58:112:3988:58:2059:-133.846,0,-299.972	0/1:138:105,33:105:3754:33:1180:-64.9632,0,-286.454	0/1:123:98,25:98:3491:25:878:-42.3092,0,-270.609	0/1:136:84,52:84:3011:52:1834:-124.377,0,-220.214	0/1:84:74,10:74:2656:10:356:-7.09381,0,-206.792	0/1:100:58,42:58:2076:42:1508:-105.912,0,-150.153	0/1:339:294,45:294:10503:45:1601:-42.3263,0,-816.488	0/1:310:263,47:263:9401:47:1675:-57.7172,0,-729.783	0/1:165:108,53:108:3864:53:1892:-121.732,0,-286.793	0/1:240:84,156:84:2987:156:5547:-427.066,0,-186.752	0/1:275:246,29:246:8788:29:1031:-10.3185,0,-683.918	0/1:210:112,98:112:4020:98:3498:-251.775,0,-286.89	0/1:653:462,191:462:16575:191:6810:-416.386,0,-1242.28	0/1:523:259,264:259:9299:264:9356:-684.565,0,-649.101	0/1:77:58,19:58:2075:19:684:-38.711,0,-157.842	0/1:498:216,282:216:7750:282:10080:-757.164,0,-520.799	0/1:415:316,99:316:11351:99:3519:-191.99,0,-854.851	0/1:298:230,67:230:8268:67:2362:-122.978,0,-635.814	0/1:10:8,2:8:288:2:72:-3.82642,0,-22.3988	0/1:52:10,42:10:360:42:1495:-119.189,0,-15.633	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.07246	0/1:9:8,1:8:284:1:32:-0.490043,0,-23.0859	0/1:25:6,19:6:216:19:672:-53.2811,0,-11.2274	0/1:473:284,189:284:10196:189:6739:-464.193,0,-741.109	0/1:231:200,31:200:7179:31:1103:-30.041,0,-554.232	0/1:120:95,25:95:3412:25:891:-44.3834,0,-261.747	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.27658	0/1:457:378,79:378:13566:79:2832:-117.541,0,-1037.61	0/1:91:59,32:59:2124:32:1150:-76.4097,0,-156.083	0/1:260:120,140:120:4299:140:4966:-368.81,0,-292.73	0/1:164:115,49:115:4107:49:1738:-107.305,0,-304.724	0/1:116:96,20:96:3439:20:716:-29.8482,0,-266.401	0/1:260:162,98:162:5784:98:3498:-236.754,0,-422.39	0/1:241:204,37:204:7320:37:1328:-47.274,0,-569.313	0/1:342:225,117:225:8073:117:4183:-273.483,0,-596.058	0/1:227:186,41:186:6692:41:1472:-64.4423,0,-513.366	0/1:283:169,114:169:6059:114:4083:-282.457,0,-438.617	0/1:326:271,55:271:9736:55:1944:-77.0951,0,-744.936	0/1:24:16,8:16:563:8:288:-18.9555,0,-43.155	0/1:266:163,103:163:5844:103:3678:-251.13,0,-425.4	0/1:115:37,78:37:1319:78:2800:-217.602,0,-80.6169	0/1:32:28,4:28:1008:4:144:-3.68066,0,-78.7474	0/1:196:163,33:163:5852:33:1184:-47.8664,0,-453.521	0/1:71:45,26:45:1620:26:915:-61.2907,0,-119.822	0/0:10:10,0:10:356:0:0:0,-3.0103,-31.6323	0/0:272:259,13:259:9258:13:468:0,-39.4205,-761.831	0/1:206:69,137:69:2476:137:4865:-375.99,0,-152.156	0/1:239:176,63:176:6305:63:2251:-130.905,0,-482.95	0/1:15:6,9:6:216:9:316:-24.2625,0,-14.6284	0/1:427:232,195:232:8299:195:6969:-498.645,0,-591.334	0/1:377:339,38:339:12114:38:1360:-9.21229,0,-937.801	0/1:127:97,30:97:3471:30:1062:-57.6589,0,-263.805	0/1:116:81,35:81:2904:35:1238:-76.7704,0,-216.013	0/0:194:184,10:184:6594:10:356:0,-26.0186,-542.97	0/1:145:96,49:96:3414:49:1723:-111.701,0,-252.33	0/1:102:28,74:28:1008:74:2626:-205.877,0,-56.4831	0/1:163:123,40:123:4377:40:1432:-79.979,0,-327.885	0/1:147:125,22:125:4470:22:788:-26.991,0,-346.986	0/1:62:14,48:14:504:48:1710:-135.52,0,-25.541	0/1:207:114,93:114:4085:93:3297:-233.525,0,-286.157	0/1:158:136,22:136:4872:22:778:-22.777,0,-378.311	0/1:402:171,231:171:6097:231:8169:-614.121,0,-408.439	0/1:236:141,95:141:5068:95:3404:-235.529,0,-369.876	0/1:361:203,158:203:7252:158:5626:-397.772,0,-519.352	0/1:290:175,115:175:6276:115:4095:-281.434,0,-456.695	0/1:17:10,7:10:360:7:252:-17.8241,0,-26.5568	0/1:241:167,73:167:6004:73:2606:-162.173,0,-449.27	0/1:200:146,54:146:5231:54:1923:-113.102,0,-400.576	0/1:502:348,154:348:12487:154:5494:-343.042,0,-927.2	0/1:160:111,49:111:3980:49:1747:-109.348,0,-297.405	0/1:113:58,55:58:2080:55:1966:-143.188,0,-147.086	0/1:124:110,14:110:3951:14:496:-7.64654,0,-308.689	0/1:296:189,107:189:6741:107:3755:-249.037,0,-495.475	0/1:88:70,18:70:2508:18:648:-32.0738,0,-192.011	0/1:215:126,89:126:4503:89:3142:-218.281,0,-325.485	0/1:144:63,81:63:2268:81:2888:-216.804,0,-152.818	0/1:81:16,65:16:576:65:2320:-184.673,0,-26.0867	0/1:211:147,64:147:5260:64:2268:-140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chr02	11166602	.	G	C	401691	PASS	AB=0.524472;ABP=45.629;AC=158;AF=0.840426;AN=188;AO=18673;CIGAR=1X;DP=22594;DPB=22594;DPRA=0;EPP=40550.9;EPPR=8493.47;GTI=1;LEN=1;MEANALT=1.10638;MQM=53.1693;MQMR=53.2095;NS=94;NUMALT=1;ODDS=2.72543;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=665051;QR=139598;RO=3910;RPL=18673;RPP=40550.9;RPPR=8493.47;RPR=0;RUN=1;SAF=18673;SAP=40550.9;SAR=0;SRF=3910;SRP=8493.47;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57:0:0:57:2028:-181.347,-17.1587,0	1/1:60:0,60:0:0:60:2132:-190.704,-18.0618,0	1/1:138:0,138:0:0:138:4898:-438.387,-41.5421,0	1/1:211:0,211:0:0:211:7494:-672.936,-63.5173,0	0/1:59:22,37:22:788:37:1332:-101.878,0,-53.3802	0/1:25:21,4:21:740:4:140:-5.39036,0,-58.4008	1/1:61:0,61:0:0:61:2176:-195.355,-18.3628,0	1/1:137:0,137:0:0:137:4881:-437.346,-41.2411,0	1/1:95:0,95:0:0:95:3346:-298.693,-28.5979,0	1/1:64:0,64:0:0:64:2300:-207.092,-19.2659,0	1/1:399:0,399:0:0:399:14162:-1270.35,-120.111,0	1/1:90:0,90:0:0:90:3202:-286.95,-27.0927,0	1/1:73:0,73:0:0:73:2589:-231.748,-21.9752,0	0/1:81:44,37:44:1572:37:1317:-94.1205,0,-116.782	0/1:65:28,37:28:995:37:1319:-99.3343,0,-69.9691	0/1:61:35,26:35:1252:26:927:-65.2687,0,-94.2147	1/1:24:0,24:0:0:24:860:-77.3481,-7.22472,0	0/1:29:10,19:10:360:19:680:-52.6403,0,-23.9265	1/1:143:0,143:0:0:143:5081:-453.666,-43.0473,0	0/1:170:91,79:91:3240:79:2828:-202.992,0,-240.232	0/1:96:43,53:43:1532:53:1900:-141.776,0,-108.836	1/1:162:0,162:0:0:162:5783:-520.121,-48.7669,0	1/1:99:0,99:0:0:99:3534:-317.577,-29.802,0	0/1:47:23,24:23:820:24:825:-60.1518,0,-59.8699	1/1:90:0,90:0:0:90:3195:-287.207,-27.0927,0	1/1:164:0,164:0:0:164:5788:-520.429,-49.3689,0	1/1:241:0,241:0:0:241:8616:-773.539,-72.5482,0	1/1:19:0,19:0:0:19:684:-61.5097,-5.71957,0	1/1:269:2,267:2:72:267:9518:-848.39,-74.1423,0	1/1:81:0,81:0:0:81:2886:-258.847,-24.3834,0	0/1:76:39,37:39:1400:37:1328:-96.729,0,-102.873	1/1:1034:2,1032:2:68:1032:36833:-3296.1,-304.814,0	1/1:1178:1,1176:1:36:1176:41950:-3756.32,-351.078,0	1/1:651:0,650:0:0:650:23101:-2060.84,-195.67,0	0/1:1983:908,1074:908:32489:1074:38227:-2824.08,0,-2306.61	1/1:1431:0,1431:0:0:1431:51051:-4564.31,-430.774,0	1/1:171:0,171:0:0:171:6066:-545.385,-51.4761,0	1/1:153:0,153:0:0:153:5441:-487.032,-46.0576,0	0/1:311:162,149:162:5761:149:5317:-381.675,0,-420.68	0/1:541:255,284:255:9120:284:10129:-746.314,0,-655.146	1/1:131:0,131:0:0:131:4652:-416.721,-39.4349,0	1/1:186:0,186:0:0:186:6635:-594.803,-55.9916,0	1/1:234:0,234:0:0:234:8310:-745.272,-70.441,0	1/1:46:0,46:0:0:46:1641:-147.156,-13.8474,0	0/1:48:27,21:27:946:21:733:-51.7763,0,-69.9665	1/1:123:0,123:0:0:123:4408:-396.085,-37.0267,0	0/1:104:56,48:56:2012:48:1694:-120.434,0,-149.043	1/1:174:1,173:1:36:173:6183:-551.714,-48.7835,0	1/1:91:0,91:0:0:91:3224:-287.967,-27.3937,0	1/1:142:1,141:1:36:141:5044:-449.372,-39.1506,0	1/1:154:0,154:0:0:154:5486:-492.754,-46.3586,0	0/1:766:360,405:360:12884:405:14430:-1064.5,0,-925.646	1/1:147:0,147:0:0:147:5245:-470.594,-44.2514,0	1/1:37:0,37:0:0:37:1319:-118.888,-11.1381,0	0/1:491:246,244:246:8744:244:8621:-623.985,0,-634.315	0/1:172:83,89:83:2972:89:3141:-229.625,0,-215.479	1/1:69:0,69:0:0:69:2458:-221.02,-20.7711,0	0/1:722:328,394:328:11747:394:14058:-1044.48,0,-836.888	0/1:591:257,334:257:9188:334:11867:-887.35,0,-646.084	1/1:67:0,67:0:0:67:2386:-214.361,-20.169,0	0/1:93:39,54:39:1385:54:1923:-144.268,0,-96.7669	1/1:715:0,715:0:0:715:25481:-2283.42,-215.236,0	1/1:65:1,64:1:36:64:2282:-201.747,-15.9697,0	0/1:147:71,76:71:2532:76:2720:-199.978,0,-182.355	1/1:47:2,45:2:72:45:1608:-137.699,-7.32138,0	1/1:100:0,100:0:0:100:3542:-317.99,-30.103,0	0/1:162:67,95:67:2396:95:3374:-253.364,0,-166.355	1/1:181:3,178:3:108:178:6346:-560.209,-44.4185,0	1/1:489:0,489:0:0:489:17362:-1555.13,-147.204,0	1/1:46:0,46:0:0:46:1652:-148,-13.8474,0	0/1:38:19,19:19:684:19:680:-50.0145,0,-49.7809	1/1:776:6,770:6:216:770:27575:-2455.47,-213.92,0	1/1:170:0,170:0:0:170:6024:-539.677,-51.1751,0	0/1:62:32,30:32:1144:30:1061:-76.2862,0,-82.9919	1/1:178:0,178:0:0:178:6323:-566.53,-53.5833,0	1/1:166:0,166:0:0:166:5926:-532.009,-49.971,0	1/1:178:0,178:0:0:178:6299:-562.129,-53.5833,0	1/1:94:0,94:0:0:94:3318:-298.061,-28.2968,0	1/1:1227:0,1226:0:0:1226:43649:-3904.92,-369.063,0	1/1:109:1,108:1:36:108:3876:-343.799,-29.2191,0	0/1:141:70,71:70:2508:71:2539:-185.116,0,-182.83	1/1:181:0,181:0:0:181:6475:-581.046,-54.4864,0	1/1:44:0,44:0:0:44:1535:-138.191,-13.2453,0	1/1:54:0,54:0:0:54:1917:-172.512,-16.2556,0	0/1:30:20,10:20:720:10:360:-23.6029,0,-55.9553	1/1:90:0,89:0:0:89:3137:-281.407,-26.7917,0	0/1:22:10,12:10:356:12:432:-32.3845,0,-25.6812	1/1:68:0,68:0:0:68:2440:-218.897,-20.47,0	1/1:54:1,53:1:32:53:1908:-168.091,-13.0599,0	1/1:408:0,408:0:0:408:14550:-1301.79,-122.82,0	0/1:1001:477,522:477:16935:522:18563:-1362.65,0,-1216.12	0/1:59:46,13:46:1628:13:464:-24.3053,0,-128.606	1/1:5:0,5:0:0:5:180:-16.5401,-1.50515,0	1/1:60:0,60:0:0:60:2131:-191.647,-18.0618,0
chr02	11166605	.	T	C	64761.6	PASS	AB=0.479509;ABP=33.0008;AC=30;AF=0.159574;AN=188;AO=3972;CIGAR=1X;DP=22622;DPB=22622;DPRA=1.95043;EPP=8628.1;EPPR=40459.7;GTI=1;LEN=1;MEANALT=1.20455;MQM=53.1078;MQMR=53.1915;NS=94;NUMALT=1;ODDS=4.76275;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141294;QR=665228;RO=18631;RPL=3972;RPP=8628.1;RPPR=40459.7;RPR=0;RUN=1;SAF=3972;SAP=8628.1;SAR=0;SRF=18631;SRP=40459.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1940:0:0:0,-16.2556,-172.895	0/0:61:61,0:61:2184:0:0:0,-18.3628,-195.688	0/0:139:139,0:139:4938:0:0:0,-41.8432,-441.166	0/0:207:207,0:207:7393:0:0:0,-62.3132,-663.431	0/1:57:36,21:36:1296:21:748:-50.3937,0,-99.2462	0/1:27:4,23:4:144:23:813:-64.4232,0,-5.15234	0/0:59:59,0:59:2085:0:0:0,-17.7608,-187.187	0/0:136:136,0:136:4864:0:0:0,-40.9401,-435.708	0/0:93:93,0:93:3320:0:0:0,-27.9958,-295.899	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.206	0/0:398:397,1:397:14101:1:36:0,-116.307,-1260.86	0/0:86:86,0:86:3061:0:0:0,-25.8886,-274.417	0/0:74:74,0:74:2614:0:0:0,-22.2762,-233.781	0/1:80:36,44:36:1283:44:1566:-116.541,0,-91.3794	0/1:65:37,28:37:1309:28:999:-70.3282,0,-98.4344	0/1:61:26,35:26:910:35:1251:-94.1234,0,-63.7449	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.3481	0/1:29:19,10:19:680:10:356:-23.5717,0,-52.6403	0/0:144:144,0:144:5103:0:0:0,-43.3483,-455.434	0/1:169:79,90:79:2840:90:3232:-239.79,0,-204.369	0/1:99:56,43:56:2004:43:1540:-108.645,0,-149.285	0/0:162:162,0:162:5781:0:0:0,-48.7669,-519.936	0/0:100:100,0:100:3576:0:0:0,-30.103,-321.342	0/1:47:24,23:24:860:23:824:-60.228,0,-63.2938	0/0:89:88,0:88:3135:0:0:0,-26.4906,-281.567	0/0:163:163,0:163:5830:0:0:0,-49.0679,-523.952	0/0:239:239,0:239:8579:0:0:0,-71.9462,-770.203	0/0:19:19,0:19:675:0:0:0,-5.71957,-60.7212	0/0:274:272,2:272:9674:2:72:0,-75.6474,-862.192	0/0:81:81,0:81:2876:0:0:0,-24.3834,-258.29	0/1:75:35,40:35:1251:40:1424:-105.474,0,-90.1073	0/0:1035:1032,2:1032:36959:2:72:0,-304.715,-3305.56	0/0:1167:1159,6:1159:41374:6:216:0,-331.889,-3690.05	0/0:652:651,0:651:23250:0:0:0,-195.971,-2072.79	0/1:1997:1069,924:1069:38204:924:32748:-2326.7,0,-2815.8	0/0:1443:1442,0:1442:51509:0:0:0,-434.085,-4602.82	0/0:172:172,0:172:6142:0:0:0,-51.7772,-552.096	0/0:157:157,0:157:5591:0:0:0,-47.2617,-499.863	0/1:310:147,163:147:5234:163:5761:-422.443,0,-373.934	0/1:552:290,262:290:10331:262:9318:-669.204,0,-759.309	0/0:132:131,0:131:4689:0:0:0,-39.4349,-419.694	0/0:188:188,0:188:6652:0:0:0,-56.5936,-596.372	0/0:232:232,0:232:8297:0:0:0,-69.839,-743.373	0/0:46:46,0:46:1647:0:0:0,-13.8474,-147.954	0/1:46:20,26:20:712:26:917:-68.5394,0,-50.5082	0/0:123:123,0:123:4420:0:0:0,-37.0267,-395.736	0/1:108:48,60:48:1724:60:2135:-158.709,0,-121.031	0/0:177:176,1:176:6279:1:36:0,-49.6866,-559.913	0/0:90:90,0:90:3166:0:0:0,-27.0927,-282.621	0/0:142:141,1:141:5033:1:36:0,-39.1506,-448.577	0/0:153:153,0:153:5442:0:0:0,-46.0576,-488.788	0/1:766:404,360:404:14429:360:12822:-920.121,0,-1064.48	0/0:146:146,0:146:5252:0:0:0,-43.9504,-471.081	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.773	0/1:487:239,247:239:8562:247:8785:-638.538,0,-620.141	0/1:177:90,87:90:3223:87:3077:-223.344,0,-235.259	0/0:68:68,0:68:2431:0:0:0,-20.47,-218.519	0/1:728:394,333:394:14136:333:11919:-850.599,0,-1049.05	0/1:598:334,264:334:11896:264:9357:-659.953,0,-888.3	0/0:68:68,0:68:2425:0:0:0,-20.47,-217.864	0/1:93:52,41:52:1856:41:1449:-102.523,0,-138.297	0/0:710:710,0:710:25396:0:0:0,-213.731,-2276.12	0/0:66:64,1:64:2280:1:36:0,-16.2987,-201.495	0/1:151:77,74:77:2746:74:2656:-192.141,0,-201.009	0/0:46:44,2:44:1569:2:72:0,-7.02035,-134.169	0/0:102:102,0:102:3635:0:0:0,-30.7051,-326.295	0/1:164:95,69:95:3394:69:2457:-171.047,0,-255.592	0/0:181:178,3:178:6388:3:108:0,-44.4185,-564.15	0/0:488:487,0:487:17375:0:0:0,-146.602,-1555.97	0/0:46:46,0:46:1633:0:0:0,-13.8474,-146.52	0/1:38:21,17:21:748:17:612:-43.3045,0,-56.1303	0/0:788:782,6:782:27944:6:216:0,-217.532,-2488.15	0/0:167:167,0:167:5929:0:0:0,-50.272,-530.69	0/1:61:28,33:28:1000:33:1188:-87.2959,0,-70.7609	0/0:184:183,0:183:6546:0:0:0,-55.0885,-586.064	0/0:161:161,0:161:5752:0:0:0,-48.4658,-516.857	0/0:176:176,0:176:6308:0:0:0,-52.9813,-563.049	0/0:93:93,0:93:3316:0:0:0,-27.9958,-297.388	0/0:1227:1226,1:1226:43785:1:36:0,-365.976,-3911.93	0/0:111:110,1:110:3935:1:36:0,-29.8212,-349.103	0/1:137:69,68:69:2443:68:2427:-176.639,0,-177.761	0/0:184:184,0:184:6611:0:0:0,-55.3895,-593.167	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.368	0/0:54:54,0:54:1931:0:0:0,-16.2556,-173.774	0/1:29:9,20:9:320:20:720:-56.2564,0,-20.3079	0/0:87:87,0:87:3093:0:0:0,-26.1896,-277.112	0/1:22:12,10:12:423:10:360:-26.0393,0,-31.5804	0/0:67:67,0:67:2396:0:0:0,-20.169,-214.953	0/0:54:53,1:53:1878:1:36:0,-12.6664,-165.165	0/0:405:404,1:404:14381:1:36:0,-118.463,-1282.95	0/1:991:508,482:508:18079:482:17149:-1237.92,0,-1321.69	0/1:59:13,46:13:468:46:1640:-129.688,0,-24.666	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5401	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.232
chr02	11246954	.	CTCA	CTCC,TTCC	162323	PASS	AB=0.464188,0.529798;ABP=23.3846,17.116;AC=159,29;AF=0.845745,0.154255;AN=188;AO=5445,972;CIGAR=3M1X,1X2M1X;DP=6453;DPB=6454.25;DPRA=0,0.918059;EPP=6047.02,1780.54;EPPR=18.2106;GTI=1;LEN=1,4;MEANALT=1.57447,2.29032;MQM=59.9893,59.9702;MQMR=60;NS=94;NUMALT=2;ODDS=4.98716;PAIRED=0,0;PAIREDR=0;PAO=1.66667,1.66667;PQA=34.6667,34.6667;PQR=0;PRO=0;QA=194210,34154;QR=246;RO=7;RPL=775,40;RPP=6053.23,1780.54;RPPR=18.2106;RPR=4670,932;RUN=1,1;SAF=1,0;SAP=11818,2113.68;SAR=5444,972;SRF=0;SRP=18.2106;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,26,0:0:0:26,0:932,0:-83.8594,-7.82678,0,-83.8594,-7.82678,-83.8594	1/1:100:0,100,0:0:0:100,0:3569,0:-321.417,-30.103,0,-321.417,-30.103,-321.417	1/1:46:0,46,0:0:0:46,0:1631,0:-147.078,-13.8474,0,-147.078,-13.8474,-147.078	1/1:114:0,113,0:0:0:113,0:4021,0:-361.799,-34.0164,0,-361.799,-34.0164,-361.799	1/2:54:0,19,35:0:0:19,35:669,1212:-153.31,-98.8436,-93.124,-54.816,0,-44.28	1/2:42:0,17,25:0:0:17,25:604,878:-121.031,-71.8109,-66.6934,-49.5731,0,-42.0473	1/1:54:1,53,0:1:36:53,0:1894,0:-167.14,-12.6573,0,-167.441,-15.9546,-170.379	1/1:66:0,66,0:0:0:66,0:2364,0:-213.018,-19.868,0,-213.018,-19.868,-213.018	1/1:55:0,55,0:0:0:55,0:1972,0:-177.755,-16.5567,0,-177.755,-16.5567,-177.755	1/1:90:1,89,0:1:36:89,0:3181,0:-282.914,-23.4944,0,-283.215,-26.7917,-286.153	1/1:72:0,70,0:0:0:70,0:2504,0:-225.253,-21.0721,0,-225.253,-21.0721,-225.253	1/1:73:0,73,0:0:0:73,0:2601,0:-234.285,-21.9752,0,-234.285,-21.9752,-234.285	1/1:60:0,60,0:0:0:60,0:2143,0:-193.137,-18.0618,0,-193.137,-18.0618,-193.137	1/2:79:0,50,29:0:0:50,29:1773,1028:-228.548,-84.1031,-69.0516,-144.8,0,-136.07	1/2:56:1,23,32:1:36:23,32:820,1144:-156.88,-90.3392,-86.353,-63.9016,0,-57.2062	1/2:53:0,19,34:0:0:19,34:684,1183:-152.353,-96.5374,-90.8178,-56.1708,0,-45.9357	1/1:73:0,73,0:0:0:73,0:2591,0:-233.438,-21.9752,0,-233.438,-21.9752,-233.438	1/2:56:1,26,29:1:36:26,29:936,1038:-157.78,-81.7068,-76.8175,-73.4354,0,-67.643	1/1:39:0,38,0:0:0:38,0:1352,0:-121.621,-11.4391,0,-121.621,-11.4391,-121.621	1/2:114:0,53,60:0:0:53,60:1897,2127:-327.973,-173.276,-157.322,-154.693,0,-136.631	1/2:111:0,45,64:0:0:45,64:1604,2257:-314.605,-183.855,-170.309,-130.83,0,-111.564	1/1:37:0,37,0:0:0:37,0:1320,0:-119.102,-11.1381,0,-119.102,-11.1381,-119.102	1/1:36:0,36,0:0:0:36,0:1276,0:-115.142,-10.8371,0,-115.142,-10.8371,-115.142	1/2:44:0,14,30:0:0:14,30:500,1045:-126.094,-85.3266,-81.1122,-41.1218,0,-32.0909	1/1:38:0,38,0:0:0:38,0:1368,0:-123.421,-11.4391,0,-123.421,-11.4391,-123.421	1/1:197:0,197,0:0:0:197,0:7039,0:-633.571,-59.3029,0,-633.571,-59.3029,-633.571	1/1:160:0,160,0:0:0:160,0:5721,0:-515.006,-48.1648,0,-515.006,-48.1648,-515.006	1/1:33:0,32,0:0:0:32,0:1144,0:-102.91,-9.63296,0,-102.91,-9.63296,-102.91	1/1:154:1,153,0:1:36:153,0:5454,0:-487.389,-42.7603,0,-487.69,-46.0576,-490.628	1/1:132:1,130,0:1:30:130,0:4670,0:-417.43,-36.7653,0,-417.731,-39.1339,-420.129	1/2:79:0,34,45:0:0:34,45:1220,1559:-226.568,-127.05,-116.815,-99.8718,0,-86.3254	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:4:0,1,3:0:0:1,3:36,106:-11.9251,-8.98601,-8.68498,-3.29724,0,-2.39415	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:217:0,215,0:0:0:215,0:7652,0:-688.411,-64.7215,0,-688.411,-64.7215,-688.411	1/1:88:0,88,0:0:0:88,0:3118,0:-280.845,-26.4906,0,-280.845,-26.4906,-280.845	1/2:77:0,40,37:0:0:40,37:1413,1315:-222.584,-107.514,-95.4728,-115.424,0,-104.286	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:105:0,105,0:0:0:105,0:3710,0:-334.041,-31.6082,0,-334.041,-31.6082,-334.041	1/1:35:0,35,0:0:0:35,0:1244,0:-112.265,-10.5361,0,-112.265,-10.5361,-112.265	1/1:55:0,55,0:0:0:55,0:1965,0:-177.123,-16.5567,0,-177.123,-16.5567,-177.123	1/1:68:0,67,0:0:0:67,0:2404,0:-216.257,-20.169,0,-216.257,-20.169,-216.257	1/2:58:0,28,28:0:0:28,28:995,968:-159.801,-78.714,-70.2851,-81.1489,0,-72.7201	1/1:33:0,33,0:0:0:33,0:1173,0:-105.876,-9.93399,0,-105.876,-9.93399,-105.876	1/2:59:1,27,31:1:36:27,31:952,1083:-162.364,-85.1481,-79.9581,-74.5701,0,-68.1759	1/1:89:0,88,0:0:0:88,0:3160,0:-284.264,-26.4906,0,-284.264,-26.4906,-284.264	1/1:92:0,92,0:0:0:92,0:3292,0:-296.499,-27.6948,0,-296.499,-27.6948,-296.499	1/1:63:0,63,0:0:0:63,0:2245,0:-202.312,-18.9649,0,-202.312,-18.9649,-202.312	1/1:101:0,101,0:0:0:101,0:3613,0:-325.374,-30.404,0,-325.374,-30.404,-325.374	1/2:5:0,2,3:0:0:2,3:72,107:-14.9552,-9.07908,-8.47702,-6.23466,0,-5.33157	1/1:106:0,106,0:0:0:106,0:3788,0:-341.119,-31.9092,0,-341.119,-31.9092,-341.119	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1529,-9.0309,0,-97.1529,-9.0309,-97.1529	1/2:11:0,4,7:0:0:4,7:140,237:-30.9476,-19.5528,-18.3487,-11.7405,0,-9.63325	1/2:105:0,48,55:0:0:48,55:1707,1934:-296.604,-157.491,-143.042,-139.178,0,-122.621	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/2:5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chr02	11246975	.	A	T	16554.7	PASS	AB=0.525405;ABP=13.3817;AC=29;AF=0.154255;AN=188;AO=977;CIGAR=1X;DP=6543;DPB=6543;DPRA=0.925432;EPP=2124.54;EPPR=12072.1;GTI=0;LEN=1;MEANALT=1;MQM=59.9662;MQMR=59.9793;NS=94;NUMALT=1;ODDS=5.64886;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34975;QR=198874;RO=5566;RPL=977;RPP=2124.54;RPPR=12080.7;RPR=0;RUN=1;SAF=0;SAP=2124.54;SAR=977;SRF=1;SRP=12080.7;SRR=5565;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:105:105,0:105:3736:0:0:0,-31.6081,-335.504	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/0:114:114,0:114:4071:0:0:0,-34.3174,-366.577	0/1:51:17,34:17:600:34:1193:-92.3184,0,-38.9767	0/1:42:17,25:17:608:25:900:-68.6778,0,-42.4088	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.545	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:81:52,29:52:1839:29:1044:-69.8914,0,-141.406	0/1:56:24,32:24:864:32:1145:-86.5018,0,-61.2249	0/1:54:20,34:20:720:34:1213:-93.2196,0,-48.8732	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/1:57:28,29:28:1008:29:1044:-77.1161,0,-73.8776	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:115:55,60:55:1972:60:2141:-158.337,0,-143.136	0/1:114:49,65:49:1752:65:2329:-175.551,0,-123.647	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:42:12,30:12:428:30:1080:-84.8654,0,-26.2155	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:200:200,0:200:7137:0:0:0,-60.206,-642.389	0/0:162:162,0:162:5795:0:0:0,-48.7669,-521.664	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:158:158,0:158:5668:0:0:0,-47.5627,-510.238	0/0:132:132,0:132:4716:0:0:0,-39.736,-424.598	0/1:82:38,44:38:1364:44:1576:-117.447,0,-98.3763	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:1,3:1:32:3:107:-8.77805,0,-1.99519	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:220:220,0:220:7855:0:0:0,-66.2266,-706.912	0/0:87:86,1:86:3076:1:36:0,-22.5913,-273.47	0/1:78:41,37:41:1476:37:1332:-96.702,0,-109.656	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:106:106,0:106:3775:0:0:0,-31.9092,-339.76	0/0:36:36,0:36:1256:0:0:0,-10.8371,-113.339	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.13	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:59:29,30:29:1040:30:1080:-79.7501,0,-76.1536	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:60:29,31:29:1040:31:1116:-82.6899,0,-75.8526	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.341	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.123	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:105:105,0:105:3752:0:0:0,-31.6081,-337.881	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:11:4,7:4:140:7:248:-19.3529,0,-9.63325	0/1:106:50,56:50:1792:56:2004:-148.724,0,-129.653	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/1:133:66,67:66:2355:67:2403:-176.489,0,-172.171	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:135:135,0:135:4828:0:0:0,-40.639,-434.675	0/1:132:80,52:80:2848:52:1860:-127.944,0,-216.823	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.123	0/1:82:41,41:41:1468:41:1467:-107.641,0,-107.732	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.32	0/1:84:44,40:44:1571:40:1436:-104.251,0,-116.394	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:117:117,0:117:4167:0:0:0,-35.2205,-375.203	0/1:44:20,24:20:712:24:864:-64.8372,0,-51.1613	0/0:108:108,0:108:3856:0:0:0,-32.5112,-347.237	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.524	0/0:83:82,1:82:2923:1:36:0,-21.3872,-259.707	0/0:95:92,3:92:3292:3:108:0,-18.5227,-286.424	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:56:24,32:24:864:32:1144:-86.4118,0,-61.2249	0/0:147:147,0:147:5243:0:0:0,-44.2514,-472.007	0/0:131:131,0:131:4695:0:0:0,-39.4349,-422.709	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/1:82:43,39:43:1539:39:1396:-101.255,0,-114.118	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.657	0/1:35:12,23:12:432:23:828:-64.3081,0,-28.6851	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:81:81,0:81:2887:0:0:0,-24.3834,-260.067	0/0:37:37,0:37:1305:0:0:0,-11.1381,-117.749	0/1:94:58,36:58:2063:36:1288:-87.9082,0,-157.639	0/1:76:18,58:18:648:58:2053:-162.162,0,-35.7736	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/0:117:117,0:117:4179:0:0:0,-35.2205,-376.292
chr02	11317950	.	C	T	13226.5	PASS	AB=0.198401;ABP=6920.21;AC=64;AF=0.340426;AN=188;AO=1967;CIGAR=1X;DP=13374;DPB=13374;DPRA=3.58441;EPP=3942.26;EPPR=24764.3;GTI=30;LEN=1;MEANALT=1;MQM=57.6909;MQMR=31.0505;NS=94;NUMALT=1;ODDS=0.965276;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70194;QR=407450;RO=11407;RPL=40;RPP=3933.93;RPPR=24764.3;RPR=1927;RUN=1;SAF=1966;SAP=4265.62;SAR=1;SRF=11407;SRP=24773;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:40:40,0:40:1428:0:0:0,-12.0412,-108.357	0/1:164:144,20:144:5152:20:720:-15.7589,0,-343.417	0/1:162:135,27:135:4804:27:968:-38.6255,0,-318.914	0/1:308:257,51:257:9184:51:1824:-71.6848,0,-594.554	0/0:87:79,8:79:2827:8:288:0,-0.954576,-186.638	0/0:115:110,5:110:3943:5:180:0,-18.1131,-285.356	0/0:301:288,13:288:10303:13:468:0,-48.1596,-728.288	0/0:172:167,5:167:5968:5:180:0,-35.2251,-438.588	0/0:135:129,6:129:4619:6:215:0,-22.8705,-335.286	0/1:188:162,26:162:5796:26:928:-27.1599,0,-376.233	0/1:158:114,44:114:4031:44:1576:-94.3612,0,-255.241	0/1:96:83,13:83:2963:13:449:-11.2294,0,-197.79	0/1:118:102,16:102:3630:16:576:-16.1156,0,-242.986	0/0:97:93,4:93:3310:4:143:0,-16.4817,-235.082	0/1:98:83,15:83:2980:15:536:-18.4342,0,-193.073	0/0:92:88,4:88:3139:4:144:0,-14.5602,-223.496	0/1:95:81,14:81:2892:14:500:-16.6932,0,-193.196	0/1:101:90,11:90:3206:11:392:-4.18751,0,-214.835	0/1:89:75,14:75:2680:14:496:-18.1356,0,-178.174	0/0:247:225,22:225:8055:22:788:0,-3.68057,-531.286	0/1:195:169,26:169:6047:26:924:-24.3284,0,-394.377	0/1:121:101,20:101:3600:20:720:-28.6224,0,-227.198	0/0:121:116,5:116:4164:5:180:0,-19.8746,-293.872	0/0:174:162,12:162:5799:12:424:0,-13.928,-394.599	0/1:95:75,20:75:2672:20:708:-35.4477,0,-172.547	0/1:393:344,49:344:12295:49:1721:-36.8548,0,-780.47	0/1:325:278,47:278:9922:47:1671:-52.8341,0,-647.341	0/0:64:60,4:60:2148:4:144:0,-5.9523,-147.754	0/0:423:402,21:402:14350:21:756:0,-58.9794,-979.948	0/1:180:158,22:158:5645:22:780:-16.3376,0,-367.776	0/0:221:209,12:209:7408:12:428:0,-27.7337,-518.194	0/1:25:11,14:11:392:14:492:-36.9768,0,-22.1557	0/1:52:20,32:20:711:32:1140:-87.1649,0,-38.0697	0/1:42:8,34:8:284:34:1224:-97.6872,0,-10.0092	0/1:59:12,47:12:424:47:1663:-127.977,0,-15.1502	0/1:32:20,12:20:705:12:428:-29.2258,0,-45.2076	0/1:349:264,85:264:9433:85:3044:-169.097,0,-581.774	0/0:166:161,5:161:5763:5:180:0,-33.4189,-414.227	0/0:134:129,5:129:4593:5:180:0,-23.9798,-335.027	0/1:12:7,5:7:244:5:180:-12.6751,0,-15.2668	0/1:225:202,23:202:7228:23:804:-4.9395,0,-472.152	0/1:76:65,11:65:2328:11:388:-10.2526,0,-151.26	0/0:142:135,7:135:4810:7:252:0,-19.7173,-338.385	0/1:134:119,15:119:4234:15:540:-8.59033,0,-277.101	0/1:105:86,19:86:3088:19:669:-28.9104,0,-198.55	0/1:146:90,56:90:3216:56:1997:-136.02,0,-191.68	0/1:163:147,16:147:5267:16:576:-3.062,0,-352.49	0/1:226:204,22:204:7284:22:788:-2.66634,0,-476.066	0/0:156:150,6:150:5362:6:201:0,-28.5478,-381.374	0/1:122:89,33:89:3200:33:1188:-70.4065,0,-202.209	0/0:237:222,15:222:7934:15:536:0,-22.7797,-530.551	0/1:19:15,4:15:536:4:144:-7.43124,0,-34.8817	0/0:208:196,12:196:7036:12:428:0,-23.8006,-497.873	0/1:84:66,18:66:2372:18:644:-32.9477,0,-146.974	0/1:22:16,6:16:572:6:216:-13.1679,0,-37.5273	0/0:136:129,7:129:4620:7:252:0,-18.0691,-323.026	0/0:77:70,7:70:2508:7:248:0,-0.518746,-164.712	0/1:22:4,18:4:144:18:636:-50.2152,0,-4.11757	0/1:34:27,7:27:943:7:248:-12.4242,0,-59.8536	0/0:127:122,5:122:4348:5:176:0,-22.0474,-309.597	0/1:200:176,24:176:6275:24:864:-17.8608,0,-408.563	0/1:22:6,16:6:216:16:572:-45.181,0,-10.0632	0/1:173:155,18:155:5536:18:648:-6.5259,0,-352.871	0/1:224:198,26:198:7077:26:908:-14.4919,0,-462.16	0/1:117:106,11:106:3796:11:396:-0.762241,0,-248.621	0/0:95:90,5:90:3219:5:180:0,-12.0494,-224.302	0/1:211:177,34:177:6326:34:1220:-46.1295,0,-409.514	0/0:127:117,10:117:4171:10:356:0,-5.85592,-280.153	0/1:77:57,20:57:2031:20:720:-41.9029,0,-128.591	0/0:117:113,4:113:4038:4:144:0,-21.9078,-295.545	0/1:207:175,32:175:6268:32:1136:-35.0397,0,-395.23	0/1:80:28,52:28:1008:52:1835:-141.192,0,-51.8324	0/1:165:142,23:142:5042:23:824:-24.6736,0,-336.978	0/1:75:68,7:68:2428:7:248:-0.0869451,0,-163.965	0/0:301:289,12:289:10285:12:432:0,-51.3888,-730.181	0/1:167:105,62:105:3772:62:2216:-148.959,0,-231.598	0/0:121:117,4:117:4187:4:140:0,-24.03,-308.263	0/1:64:57,7:57:2035:7:252:-3.76304,0,-136.705	0/1:42:22,20:22:780:20:699:-50.097,0,-47.7203	0/1:89:71,18:71:2528:18:648:-31.7737,0,-162.871	0/0:115:112,3:112:4003:3:108:0,-24.5433,-295.448	0/1:404:326,78:326:11682:78:2794:-129.682,0,-751.286	0/1:182:136,46:136:4846:46:1652:-93.3975,0,-307.371	0/1:126:90,36:90:3198:36:1296:-78.8023,0,-202.393	0/1:102:89,13:89:3192:13:462:-9.83942,0,-207.525	0/1:242:151,91:151:5407:91:3252:-219.836,0,-328.963	0/0:71:69,2:69:2472:2:72:0,-14.5364,-182.127	0/1:132:105,27:105:3746:27:964:-47.2959,0,-247.192	0/1:116:86,30:86:3080:30:1076:-62.0427,0,-200.916	0/1:96:84,12:84:3012:12:424:-9.55078,0,-196.518	0/1:170:140,30:140:5003:30:1076:-45.8869,0,-322.061	0/1:94:78,16:78:2743:16:572:-23.3483,0,-177.421	0/1:160:123,37:123:4394:37:1324:-71.2797,0,-281.241	0/1:183:144,39:144:5115:39:1395:-70.6773,0,-327.884
chr02	11317964	.	GGAGAACA	TGAAAACG,GGAAAACA	212726	PASS	AB=0.798004,0.197752;ABP=6727.75,6920.66;AC=125,63;AF=0.664894,0.335106;AN=188;AO=11500,1963;CIGAR=1X2M1X3M1X,3M1X4M;DP=13509;DPB=13508.4;DPRA=0,3.6207;EPP=24818.8,4230.94;EPPR=9.52472;GTI=10;LEN=8,1;MEANALT=2.39362,2.4086;MQM=31.0322,58.1783;MQMR=60;NS=94;NUMALT=2;ODDS=2248.97;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=405270,70115;QR=108;RO=3;RPL=11482,1959;RPP=24818.8,4230.94;RPPR=9.52472;RPR=18,4;RUN=1,1;SAF=11500,1963;SAP=24974.9,4265.61;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40,0:0:0:40,0:1417,0:-107.954,-12.0412,0,-107.954,-12.0412,-107.954	1/2:168:0,147,21:0:0:147,21:5154,752:-414.073,-61.6837,-17.4323,-352.74,0,-346.419	1/2:164:0,137,27:0:0:137,27:4819,953:-407.789,-77.9105,-36.6694,-330.222,0,-322.095	1/2:313:0,260,52:0:0:260,52:9139,1853:-762.712,-151.055,-72.7873,-611.703,0,-596.05	1/1:87:0,80,7:0:0:80,7:2825,252:-213.073,-24.0824,0,-192.506,-3.16065,-190.399	1/1:115:0,110,5:0:0:110,5:3869,180:-298.871,-33.1133,0,-284.227,-18.1131,-282.722	1/1:305:0,291,14:0:0:291,14:10220,503:-772.243,-87.5997,0,-731.485,-46.4875,-727.27	1/1:174:0,169,5:0:0:169,5:5950,180:-457.203,-50.8741,0,-442.514,-35.8272,-441.009	1/1:136:0,130,5:0:0:130,5:4591,164:-352.791,-39.1339,0,-340.621,-27.0063,-339.116	1/2:192:0,166,26:0:0:166,26:5808,936:-464.959,-76.6477,-26.6767,-388.662,0,-380.835	1/2:160:0,114,46:0:0:114,46:3986,1656:-402.214,-135.216,-100.899,-267.339,0,-253.491	1/2:98:0,84,13:0:0:84,13:2975,460:-240.026,-36.9047,-11.6181,-203.162,0,-199.248	1/2:118:0,103,14:0:0:103,14:3631,504:-289.787,-41.1285,-10.1224,-248.656,0,-244.442	1/1:97:0,92,4:0:0:92,4:3229,139:-243.662,-27.6948,0,-232.63,-16.6288,-231.426	1/2:95:0,84,11:0:0:84,11:2974,396:-230.933,-32.6649,-7.37841,-198.62,0,-195.309	1/1:92:0,89,2:0:0:89,2:3147,72:-238.336,-26.7917,0,-232.46,-20.863,-231.858	1/2:97:0,83,14:0:0:83,14:2936,504:-242.155,-41.4385,-16.453,-201.068,0,-196.853	1/2:101:0,91,10:0:0:91,10:3227,345:-248.331,-28.0982,-0.704474,-220.571,0,-217.561	1/2:89:0,75,14:0:0:75,14:2644,499:-221.931,-41.0145,-18.4372,-181.264,0,-177.05	1/1:252:0,229,22:0:0:229,22:8109,788:-609.653,-68.9359,0,-545.396,-4.53902,-538.773	1/2:196:0,171,24:0:0:171,24:6008,849:-472.304,-69.0619,-17.5858,-403.234,0,-396.009	1/2:127:0,100,26:0:0:100,26:3510,922:-303.56,-74.7559,-44.6529,-228.851,0,-221.024	1/1:124:0,119,5:0:0:119,5:4166,180:-314.869,-35.8226,0,-300.181,-20.7777,-298.676	1/1:174:0,162,11:0:0:162,11:5701,396:-429.269,-48.7669,0,-396.998,-16.4439,-393.687	1/2:97:0,77,20:0:0:77,20:2712,716:-240.662,-58.7471,-35.5678,-182.26,0,-176.24	1/2:402:0,350,49:0:0:350,49:12316,1760:-945.837,-143.565,-38.205,-802.27,0,-787.519	1/2:328:0,282,46:0:0:282,46:9903,1637:-799.411,-133.762,-48.8712,-665.997,0,-652.15	1/1:65:0,61,4:0:0:61,4:2168,144:-162.979,-18.3628,0,-151.226,-6.25333,-150.022	1/1:430:0,408,22:0:0:408,22:14394,792:-1058.82,-122.82,0,-994.2,-57.8486,-987.577	1/2:181:0,157,21:0:0:157,21:5520,752:-430.525,-61.3818,-14.1201,-369.191,0,-362.869	1/1:225:0,214,11:0:0:214,11:7513,396:-567.941,-64.4204,0,-535.634,-31.7565,-532.322	1/2:24:0,11,13:0:0:11,13:393,464:-64.1484,-38.0477,-34.7364,-26.4248,0,-22.5114	1/2:54:0,20,34:0:0:20,34:712,1204:-145.952,-98.3681,-92.3475,-47.9021,0,-37.667	1/2:44:0,7,37:0:0:7,37:251,1332:-126.008,-108.908,-106.8,-17.4136,0,-6.27549	1/2:43:0,12,31:0:0:12,31:415,1116:-120.06,-91.4189,-87.8065,-28.9567,0,-19.6248	1/2:32:0,19,12:0:0:19,12:666,432:-81.0915,-35.2536,-29.534,-45.8217,0,-42.2093	1/2:355:0,265,90:0:0:265,90:9365,3236:-870.517,-264.262,-184.489,-606.595,0,-579.503	1/1:168:0,162,6:0:0:162,6:5720,212:-430.828,-48.7669,0,-413.56,-31.1482,-411.754	1/1:136:0,131,4:0:0:131,4:4629,144:-355.471,-39.4349,0,-343.72,-27.6293,-342.516	1/2:10:0,7,3:0:0:7,3:249,108:-25.7875,-9.17208,-7.06487,-16.9566,0,-16.0536	1/2:226:0,201,24:0:0:201,24:7109,864:-544.626,-70.5969,-10.0899,-474.165,0,-466.941	1/2:76:0,65,11:0:0:65,11:2286,372:-182.489,-29.6268,-10.0599,-153.187,0,-149.876	1/1:146:0,139,7:0:0:139,7:4877,237:-369.817,-41.8432,0,-350.602,-22.2913,-348.495	1/2:135:0,121,14:0:0:121,14:4276,500:-326.343,-41.1138,-4.68917,-285.579,0,-281.365	1/2:106:0,87,19:0:0:87,19:3071,684:-260.553,-56.0719,-29.8823,-204.829,0,-199.11	1/2:147:0,90,56:0:0:90,56:3178,2008:-370.497,-163.787,-136.694,-206.725,0,-189.867	1/2:165:0,148,16:0:0:148,16:5226,572:-403.543,-46.6419,-2.08951,-356.898,0,-352.081	1/2:227:0,205,22:0:0:205,22:7213,782:-545.078,-63.6919,-1.9807,-481.733,0,-475.111	1/1:155:0,149,6:0:0:149,6:5258,216:-395.805,-44.8535,0,-378.183,-26.8742,-376.377	1/2:122:0,89,33:0:0:89,33:3124,1184:-306.366,-96.8384,-70.0467,-209.869,0,-199.935	1/1:238:0,221,16:0:0:221,16:7839,561:-575.339,-66.5276,0,-529.696,-20.7879,-524.88	1/2:20:0,16,4:0:0:16,4:568,144:-50.1368,-12.1078,-7.29137,-38.3763,0,-37.1722	1/1:209:0,197,12:0:0:197,12:6970,432:-535.226,-59.3029,0,-500.018,-23.7393,-496.406	1/2:84:0,66,18:0:0:66,18:2334,644:-203.905,-52.8157,-32.9477,-151.432,0,-146.014	1/2:22:0,16,6:0:0:16,6:557,216:-56.4628,-17.9843,-13.1679,-38.8222,0,-37.016	1/1:137:0,130,7:0:0:130,7:4598,252:-346.463,-39.1339,0,-326.053,-18.3702,-323.946	1/1:77:0,70,7:0:0:70,7:2446,252:-184.735,-21.0721,0,-164.171,-0.154227,-162.064	1/2:20:0,4,16:0:0:4,16:143,568:-55.5675,-46.354,-45.1499,-9.51577,0,-4.69929	1/2:34:0,27,7:0:0:27,7:956,244:-82.2863,-20.1878,-12.06,-62.4347,0,-60.3275	1/1:128:0,123,5:0:0:123,5:4293,180:-325.116,-37.0267,0,-310.428,-21.9813,-308.923	1/2:201:0,175,25:0:0:175,25:6163,896:-483.761,-73.1186,-20.4384,-410.692,0,-403.167	1/2:22:0,6,16:0:0:6,16:210,576:-61.6409,-47.3485,-45.5423,-14.6076,0,-9.79109	1/2:174:0,155,19:0:0:155,19:5476,684:-412.513,-56.123,-9.46333,-356.741,0,-351.022	1/2:225:0,199,24:0:0:199,24:7034,849:-538.948,-69.0224,-9.11744,-469.95,0,-462.726	1/1:120:0,109,11:0:0:109,11:3795,396:-287.994,-32.8123,0,-255.676,-0.140851,-252.365	1/1:96:0,90,6:0:0:90,6:3188,216:-239.837,-27.0927,0,-222.213,-9.11287,-220.407	1/2:212:0,179,32:0:0:179,32:6305,1140:-513.945,-92.6923,-38.808,-421.246,0,-411.614	1/1:127:0,117,10:0:0:117,10:4119,356:-310.484,-35.2205,0,-281.47,-5.85562,-278.46	1/2:77:3,57,17:3:108:57,17:1995,612:-173.083,-41.0772,-32.7308,-124.081,0,-127.779	1/1:118:0,114,4:0:0:114,4:4018,144:-309.263,-34.3174,0,-297.513,-22.2089,-296.308	1/2:208:0,174,33:0:0:174,33:6130,1136:-488.011,-89.5351,-37.1558,-398.452,0,-388.518	1/2:84:0,28,55:0:0:28,55:970,1972:-226.163,-160.741,-152.312,-65.3859,0,-48.8293	1/2:167:0,141,23:0:0:141,23:4960,828:-407.303,-67.533,-25.0877,-339.804,0,-332.88	1/2:76:0,69,7:0:0:69,7:2443,252:-188.345,-20.9217,-0.150679,-167.778,0,-165.671	1/1:307:0,294,12:0:0:294,12:10371,428:-779.062,-88.5028,0,-744.169,-53.5514,-740.557	1/2:172:0,110,59:0:0:110,59:3882,2067:-427.901,-168.086,-134.972,-259.803,0,-242.042	1/1:124:0,120,3:0:0:120,3:4220,104:-326.002,-36.1236,0,-317.818,-27.8749,-316.915	1/2:66:0,59,7:0:0:59,7:2074,252:-163.228,-20.9217,-3.16098,-142.66,0,-140.552	1/2:43:0,22,21:0:0:22,21:785,748:-114.674,-61.0511,-54.4285,-53.9529,0,-47.6313	1/2:90:0,71,19:0:0:71,19:2499,676:-222.376,-55.3619,-33.9888,-167.357,0,-161.637	1/1:119:0,114,5:0:0:114,5:4011,180:-308.93,-34.3174,0,-294.241,-19.2705,-292.736	1/2:408:0,328,80:0:0:328,80:11638,2853:-1008.65,-232.497,-133.76,-776.495,0,-752.413	1/2:182:0,135,46:0:0:135,46:4769,1650:-451.84,-134.223,-93.584,-317.668,0,-303.821	1/2:129:0,91,38:0:0:91,38:3200,1364:-325.719,-111.409,-84.015,-214.65,0,-203.211	1/2:104:0,91,13:0:0:91,13:3210,452:-250.563,-36.2728,-8.87911,-214.625,0,-210.712	1/2:245:0,150,92:0:0:150,92:5262,3308:-621.365,-269.8,-224.646,-351.592,0,-323.897	1/1:70:0,69,1:0:0:69,1:2437,36:-187.449,-20.7711,0,-184.511,-17.4738,-184.21	1/2:135:0,106,29:0:0:106,29:3739,1040:-340.583,-85.1395,-53.2304,-255.789,0,-247.059	1/2:117:0,86,31:0:0:86,31:3039,1116:-298.674,-91.4189,-65.5303,-207.599,0,-198.267	1/2:97:0,85,12:0:0:85,12:3018,432:-236.706,-35.5621,-9.97453,-201.496,0,-197.883	1/2:169:0,138,30:0:0:138,30:4876,1076:-413.414,-87.7988,-46.2567,-325.73,0,-316.699	1/2:94:0,78,16:0:0:78,16:2697,568:-226.957,-46.6239,-23.1436,-180.677,0,-175.86	1/2:164:0,125,39:0:0:125,39:4431,1400:-410.502,-114.54,-76.9113,-296.306,0,-284.566	1/2:185:0,142,41:0:0:142,41:5023,1468:-454.545,-119.737,-76.9903,-334.899,0,-322.557
chr02	11317977	.	A	T,G	210070	PASS	AB=0.79899,0.198191;ABP=6612.35,6737.6;AC=126,62;AF=0.670213,0.329787;AN=188;AO=11389,1928;CIGAR=1X,1X;DP=13356;DPB=13356;DPRA=0,3.57957;EPP=24733.9,4189.61;EPPR=61.6401;GTI=10;LEN=1,1;MEANALT=2.08511,2.09677;MQM=31.0353,58.4544;MQMR=32.0741;NS=94;NUMALT=2;ODDS=2064.2;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=407364,68215;QR=963;RO=27;RPL=11389,1928;RPP=24733.9,4189.61;RPPR=61.6401;RPR=0,0;RUN=1,1;SAF=11389,1928;SAP=24733.9,4189.61;SAR=0,0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40,0:0:0:40,0:1440,0:-108.699,-12.0412,0,-108.699,-12.0412,-108.699	1/2:167:0,146,21:0:0:146,21:5222,752:-415.337,-61.6837,-17.7333,-354.004,0,-347.682	1/2:163:0,135,28:0:0:135,28:4848,986:-409.144,-80.5784,-39.9393,-328.909,0,-320.48	1/2:311:0,259,52:0:0:259,52:9253,1847:-764.189,-150.817,-72.8507,-613.717,0,-598.063	1/1:87:0,80,7:0:0:80,7:2848,252:-213.329,-24.0824,0,-192.762,-3.16065,-190.655	1/1:113:0,107,5:0:0:107,5:3848,180:-293.833,-32.2102,0,-279.189,-17.5243,-277.684	1/1:300:0,286,14:0:0:286,14:10228,496:-764.169,-86.0946,0,-723.927,-45.5028,-719.713	1/1:169:0,164,5:0:0:164,5:5866,180:-446.203,-49.3689,0,-431.515,-34.322,-430.009	1/1:137:4,131,2:4:135:131,2:4708,72:-348.338,-30.1132,0,-343.666,-33.538,-352.43	1/2:189:0,163,26:0:0:163,26:5812,915:-458.521,-74.7562,-25.6884,-384.108,0,-376.282	1/2:158:0,113,45:0:0:113,45:4011,1593:-396.18,-129.961,-95.9443,-266.556,0,-253.01	1/2:96:1,83,12:1:36:83,12:2975,415:-232.941,-30.9263,-8.38609,-199.9,0,-198.736	1/2:117:0,101,15:0:0:101,15:3614,523:-288.208,-42.5298,-12.1257,-245.713,0,-241.197	1/1:97:1,93,3:1:36:93,3:3344,108:-246.089,-25.6296,0,-237.576,-19.1372,-239.055	1/2:94:0,83,11:0:0:83,11:2980,396:-229.9,-32.6649,-7.67944,-197.588,0,-194.277	1/1:90:0,87,3:0:0:87,3:3115,108:-234.079,-26.1896,0,-225.309,-17.064,-224.406	1/2:97:0,83,14:0:0:83,14:2967,502:-242.886,-41.2737,-16.2882,-201.963,0,-197.749	1/1:101:1,91,9:1:36:91,9:3237,320:-245.442,-25.4854,0,-219.661,-1.21821,-218.87	1/2:86:0,72,14:0:0:72,14:2584,496:-215.868,-40.7134,-19.0393,-175.501,0,-171.286	1/1:249:0,228,20:0:0:228,20:8183,709:-609.71,-68.6348,0,-552.045,-10.921,-546.024	1/2:192:0,167,25:0:0:167,25:5965,879:-468.232,-71.7697,-21.4976,-396.806,0,-389.281	1/2:127:1,101,25:1:36:101,25:3623,877:-301.212,-68.1437,-40.6775,-230.409,0,-225.822	1/1:123:0,118,5:0:0:118,5:4240,180:-315.552,-35.5215,0,-300.864,-20.4767,-299.359	1/1:174:0,158,12:0:0:158,12:5671,428:-422.921,-47.5627,0,-388.072,-12.6611,-384.46	1/2:95:0,76,19:0:0:76,19:2715,671:-235.646,-54.9962,-32.1179,-180.992,0,-175.272	1/2:395:0,348,47:0:0:348,47:12443,1676:-941.188,-136.965,-32.2064,-804.572,0,-790.424	1/2:325:0,279,46:0:0:279,46:9925,1644:-796.007,-134.394,-50.4061,-661.962,0,-648.115	1/1:65:0,61,4:0:0:61,4:2196,144:-163.777,-18.3628,0,-152.024,-6.25333,-150.82	1/1:423:0,400,22:0:0:400,22:14323,765:-1042.8,-120.412,0,-980.605,-58.1688,-973.982	1/2:180:0,157,23:0:0:157,23:5637,828:-440.672,-67.9204,-20.6587,-373.104,0,-366.18	1/1:222:1,211,10:1:36:211,10:7535,356:-559.609,-60.636,0,-530.899,-34.5066,-530.77	1/2:25:0,11,14:0:0:11,14:396,489:-66.204,-40.0318,-36.7204,-26.4924,0,-22.2779	1/2:53:0,20,33:0:0:20,33:720,1180:-144.294,-96.4833,-90.4627,-48.1313,0,-38.1973	1/2:42:0,7,35:0:0:7,35:243,1243:-118.203,-101.502,-99.3946,-17.0088,0,-6.47272	1/2:42:0,11,31:0:0:11,31:381,1108:-116.706,-90.6987,-87.3874,-26.3198,0,-16.9879	1/2:31:0,20,11:0:0:20,11:720,392:-81.6832,-32.3087,-26.2881,-49.7136,0,-46.4022	1/2:349:0,263,86:0:0:263,86:9386,3050:-852.712,-248.81,-169.639,-604.24,0,-578.352	1/1:167:0,159,8:0:0:159,8:5711,284:-425.713,-47.8638,0,-403.126,-24.9321,-400.718	1/1:135:0,131,4:0:0:131,4:4671,140:-356.319,-39.4349,0,-344.927,-27.6945,-343.723	1/2:10:0,7,3:0:0:7,3:252,108:-25.8675,-9.17208,-7.06487,-17.0371,0,-16.134	1/2:222:0,198,24:0:0:198,24:7100,864:-539.944,-70.8129,-11.2089,-469.484,0,-462.26	1/2:75:3,63,8:3:108:63,8:2256,274:-164.479,-15.8171,-3.28074,-143.174,0,-147.209	1/1:144:0,137,7:0:0:137,7:4861,243:-365.284,-41.2411,0,-345.528,-21.1408,-343.421	1/2:133:0,119,14:0:0:119,14:4227,489:-320.868,-40.1167,-4.29409,-281.095,0,-276.88	1/2:106:0,87,19:0:0:87,19:3119,680:-261.839,-55.7971,-29.6075,-206.389,0,-200.669	1/2:145:0,90,55:0:0:90,55:3224,1949:-367.279,-159.097,-132.004,-208.512,0,-191.955	1/2:165:0,148,17:0:0:148,17:5298,604:-408.467,-49.528,-4.97558,-359.288,0,-354.171	1/2:228:0,205,23:0:0:205,23:7368,804:-552.186,-65.579,-3.86781,-486.951,0,-480.027	1/1:156:0,150,6:0:0:150,6:5396,216:-400.724,-45.1545,0,-383.102,-27.1752,-381.296	1/2:122:0,88,34:0:0:88,34:3141,1207:-306.955,-98.6048,-72.1142,-208.689,0,-198.454	1/1:237:0,222,15:0:0:222,15:7941,536:-579.086,-66.8287,0,-535.39,-22.7802,-530.875	1/2:19:0,15,4:0:0:15,4:540,140:-47.4191,-11.7391,-7.22361,-36.019,0,-34.8148	1/1:209:0,197,12:0:0:197,12:7062,428:-538.373,-59.3029,0,-503.525,-24.1017,-499.912	1/2:84:0,66,18:0:0:66,18:2361,648:-204.559,-53.1764,-33.3085,-151.727,0,-146.308	1/2:22:0,16,6:0:0:16,6:576,216:-57.1136,-17.9843,-1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chr02	11317983	.	A	G	167412	PASS	AB=0.798441;ABP=6650.76;AC=125;AF=0.664894;AN=188;AO=11325;CIGAR=1X;DP=13298;DPB=13298;DPRA=0;EPP=24594.9;EPPR=4280.81;GTI=30;LEN=1;MEANALT=1.03191;MQM=31.0322;MQMR=58.0203;NS=94;NUMALT=1;ODDS=0.896779;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=403963;QR=69923;RO=1970;RPL=11325;RPP=24594.9;RPPR=4280.81;RPR=0;RUN=1;SAF=11325;SAP=24594.9;SAR=0;SRF=1970;SRP=4280.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1396:-106.036,-11.7402,0	0/1:166:21,145:21:744:145:5134:-342.874,0,-17.3124	0/1:162:28,134:28:991:134:4771:-315.588,0,-40.6917	0/1:307:51,256:51:1785:256:9111:-589.438,0,-68.4803	1/1:86:7,79:7:252:79:2815:-188.701,-2.85962,0	1/1:113:5,108:5:180:108:3855:-279.434,-17.511,0	1/1:301:14,287:14:500:287:10209:-720.494,-45.6023,0	1/1:169:5,164:5:176:164:5871:-431.284,-34.6891,0	1/1:134:6,128:6:216:128:4577:-332.009,-22.5412,0	0/1:190:27,163:27:960:163:5823:-376.84,0,-29.436	0/1:161:48,113:48:1724:113:3936:-248.229,0,-106.714	0/1:95:14,81:14:488:81:2891:-192.859,0,-14.7983	0/1:118:16,102:16:572:102:3622:-242.706,0,-15.754	1/1:95:4,91:4:144:91:3233:-229.387,-15.8554,0	0/1:95:11,84:11:388:84:3012:-196.555,0,-6.65351	1/1:90:4,86:4:144:86:3068:-217.825,-13.8711,0	0/1:96:14,82:14:504:82:2903:-194.049,0,-16.7541	0/1:99:10,89:10:348:89:3184:-213.832,0,-0.823619	0/1:88:14,74:14:500:74:2648:-175.866,0,-18.7986	1/1:248:22,226:22:776:226:8111:-534.957,-5.06291,0	0/1:193:25,168:25:892:168:6000:-391.989,0,-22.3695	0/1:124:25,99:25:874:99:3556:-221.725,0,-41.4664	1/1:121:5,116:5:180:116:4147:-293.264,-19.8746,0	1/1:175:12,163:12:428:163:5824:-396.227,-13.8666,0	0/1:94:19,75:19:684:75:2675:-172.728,0,-33.5935	0/1:394:48,345:48:1695:345:12307:-781.395,0,-34.2256	0/1:327:47,280:47:1667:280:10027:-653.385,0,-51.8721	1/1:65:4,61:4:144:61:2179:-150.168,-6.25333,0	1/1:422:19,403:19:669:403:14421:-990.435,-66.5111,0	0/1:181:23,158:23:820:158:5655:-368.023,0,-19.6361	1/1:221:11,210:11:388:210:7457:-524.217,-31.2767,0	0/1:24:14,10:14:504:10:360:-19.8963,0,-38.337	0/1:54:34,20:34:1216:20:712:-37.615,0,-93.4002	0/1:42:35,7:35:1231:7:252:-6.90578,0,-98.3583	0/1:43:31,12:31:1089:12:424:-19.9666,0,-85.3721	0/1:32:12,20:12:419:20:716:-45.9606,0,-28.4097	0/1:352:90,262:90:3203:262:9357:-575.363,0,-182.469	1/1:168:6,162:6:208:162:5788:-413.836,-31.514,0	1/1:135:4,131:4:144:131:4677:-343.905,-27.3254,0	0/1:10:3,7:3:104:7:248:-15.9919,0,-6.69251	0/1:221:24,197:24:860:197:7039:-458.939,0,-11.1492	0/1:74:11,63:11:392:63:2256:-146.477,0,-11.1261	1/1:144:7,137:7:252:137:4892:-343.897,-20.3194,0	0/1:134:14,120:14:500:120:4223:-277.605,0,-4.9905	0/1:103:20,83:20:716:83:2955:-190.169,0,-33.6629	0/1:146:56,90:56:1981:90:3220:-191.192,0,-134.582	0/1:162:17,145:17:608:145:5191:-346.937,0,-6.24008	0/1:224:23,201:23:820:201:7167:-468.457,0,-5.88956	1/1:152:6,146:6:212:146:5224:-369.529,-26.3362,0	0/1:121:34,86:34:1220:86:3057:-193.071,0,-73.5871	1/1:232:16,216:16:559:216:7707:-511.744,-19.2821,0	0/1:18:3,15:3:108:15:540:-35.1159,0,-4.65538	1/1:207:12,195:12:428:195:6949:-492.326,-23.4996,0	0/1:84:18,66:18:640:66:2368:-146.871,0,-32.587	0/1:22:6,16:6:216:16:559:-36.9572,0,-13.1679	1/1:135:7,128:7:244:128:4581:-320.608,-18.4976,0	0/1:74:7,67:7:244:67:2404:-157.652,0,-0.0198221	0/1:18:14,4:14:504:4:144:-5.32169,0,-39.7772	0/1:34:7,27:7:248:27:968:-60.6294,0,-12.4242	1/1:124:5,119:5:180:119:4247:-301.594,-20.7772,0	0/1:198:25,173:25:896:173:6170:-401.012,0,-21.3408	0/1:22:16,6:16:576:6:216:-10.0632,0,-45.5423	0/1:173:19,154:19:676:154:5511:-350.944,0,-9.04203	0/1:221:25,196:25:896:196:6999:-457.317,0,-14.2172	1/1:117:10,106:10:356:106:3734:-248.44,-2.84156,0	1/1:94:6,88:6:216:88:3130:-215.133,-8.51081,0	0/1:210:32,178:32:1127:178:6359:-411.733,0,-38.3117	1/1:125:10,115:10:356:115:4094:-274.525,-5.25386,0	0/1:74:20,54:20:711:54:1931:-121.504,0,-41.9928	1/1:114:4,110:4:144:110:3947:-288.142,-21.0047,0	0/1:207:33,174:33:1167:174:6226:-391.853,0,-37.8973	0/1:82:55,27:55:1955:27:959:-47.835,0,-151.343	0/1:165:23,142:23:816:142:5052:-336.975,0,-23.952	1/1:75:7,68:7:244:68:2440:-164.663,-0.277821,0	1/1:296:12,284:12:432:284:10136:-717.1,-49.8837,0	0/1:169:61,108:61:2145:108:3861:-238.312,0,-142.052	1/1:123:4,119:4:144:119:4243:-312.382,-24.3248,0	0/1:64:7,57:7:244:57:2040:-136.906,0,-3.03351	0/1:43:21,22:21:744:22:792:-47.841,0,-53.8477	0/1:89:18,71:18:644:71:2556:-163.777,0,-31.4124	1/1:118:5,113:5:180:113:4022:-291.013,-18.9695,0	0/1:397:76,321:76:2683:321:11497:-739.487,0,-121.787	0/1:181:46,135:46:1635:135:4787:-303.978,0,-92.1695	0/1:125:36,89:36:1271:89:3157:-199.83,0,-76.8529	0/1:102:13,89:13:460:89:3148:-205.747,0,-9.51197	0/1:244:94,150:94:3339:150:5297:-322.024,0,-227.02	1/1:67:1,66:1:36:66:2338:-176.031,-16.5707,0	0/1:132:28,104:28:978:104:3660:-241.513,0,-48.5893	0/1:116:31,85:31:1108:85:3039:-196.897,0,-65.1106	0/1:97:12,85:12:428:85:3036:-198.498,0,-9.61214	0/1:165:30,135:30:1064:135:4804:-309.577,0,-46.3115	0/1:93:16,77:16:568:77:2744:-175.746,0,-23.4452	0/1:160:38,122:38:1329:122:4371:-279.063,0,-71.7262	0/1:182:41,141:41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chr02	11540558	.	G	A	19855.3	PASS	AB=0.412496;ABP=222.284;AC=30;AF=0.159574;AN=188;AO=1372;CIGAR=1X;DP=15562;DPB=15562;DPRA=0.779338;EPP=2904.61;EPPR=29897.7;GTI=5;LEN=1;MEANALT=1.11429;MQM=59.9308;MQMR=59.9746;NS=94;NUMALT=1;ODDS=4.30918;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47987;QR=504533;RO=14176;RPL=9;RPP=2904.61;RPPR=29897.7;RPR=1363;RUN=1;SAF=1372;SAP=2982.27;SAR=0;SRF=14176;SRP=30785.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:29,1:29:1036:1:36:0,-5.43262,-89.9556	0/0:265:264,0:264:9383:0:0:0,-79.4719,-844.076	0/0:226:226,0:226:8038:0:0:0,-68.0328,-723.256	0/0:574:573,0:573:20437:0:0:0,-172.49,-1838.48	0/1:101:54,47:54:1911:47:1648:-118.203,0,-141.863	0/1:78:49,29:49:1744:29:1032:-69.7131,0,-133.764	0/0:215:215,0:215:7653:0:0:0,-64.7214,-688.184	0/0:228:228,0:228:8126:0:0:0,-68.6348,-731.36	0/0:83:83,0:83:2946:0:0:0,-24.9855,-265.374	0/0:166:166,0:166:5936:0:0:0,-49.971,-534.349	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.58	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/0:88:88,0:88:3138:0:0:0,-26.4906,-282.645	0/1:113:65,48:65:2307:48:1665:-116.118,0,-173.874	0/1:55:27,28:27:972:28:988:-72.6773,0,-71.2413	0/1:48:21,27:21:756:27:964:-72.6274,0,-53.9178	0/0:91:91,0:91:3255:0:0:0,-27.3937,-293.17	0/1:64:35,29:35:1260:29:1020:-72.8462,0,-94.4396	0/0:57:57,0:57:1996:0:0:0,-17.1587,-179.912	0/1:273:184,89:184:6563:89:3101:-197.14,0,-508.57	0/1:261:147,114:147:5243:114:3953:-277.397,0,-393.44	0/0:199:198,0:198:7054:0:0:0,-59.6039,-634.509	0/0:48:48,0:48:1702:0:0:0,-14.4494,-153.464	0/1:167:98,69:98:3468:69:2409:-166.734,0,-262.064	0/0:106:106,0:106:3795:0:0:0,-31.9092,-341.747	0/0:567:566,0:566:20092:0:0:0,-170.383,-1807.45	0/0:338:338,0:338:12073:0:0:0,-101.748,-1086.42	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/0:522:522,0:522:18545:0:0:0,-157.138,-1668.58	0/0:451:449,2:449:16009:2:72:0,-128.928,-1432.89	0/1:173:121,51:121:4299:51:1773:-107.71,0,-334.953	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:4,1:4:135:1:36:-2.09312,0,-10.9774	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:200:200,0:200:7104:0:0:0,-60.206,-639.401	0/0:658:658,0:658:23416:0:0:0,-198.078,-2106.83	0/1:85:43,42:43:1540:42:1478:-107.725,0,-113.306	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:407:407,0:407:14527:0:0:0,-122.519,-1307.18	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:257:257,0:257:9145:0:0:0,-77.3647,-823.029	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/1:54:23,31:23:824:31:1063:-79.7204,0,-58.2277	0/0:214:214,0:214:7638:0:0:0,-64.4204,-687.458	0/1:198:134,64:134:4766:64:2211:-139.648,0,-369.492	0/0:393:393,0:393:13955:0:0:0,-118.305,-1255.73	0/0:191:191,0:191:6771:0:0:0,-57.4967,-609.468	0/0:488:485,2:485:17248:2:72:0,-140.125,-1545.13	0/0:323:323,0:323:11481:0:0:0,-97.2327,-1033.17	0/1:7:5,2:5:167:2:72:-4.72951,0,-13.2512	0/0:243:243,0:243:8652:0:0:0,-73.1503,-778.678	0/0:129:129,0:129:4620:0:0:0,-38.8329,-415.963	0/1:11:4,7:4:135:7:236:-18.2586,0,-9.17118	0/1:217:160,57:160:5681:57:2013:-116.118,0,-446.089	0/0:65:63,0:63:2252:0:0:0,-18.9649,-202.603	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:19:5,14:5:171:14:490:-38.7109,0,-10.0059	0/0:165:165,0:165:5864:0:0:0,-49.6699,-527.874	0/1:159:79,80:79:2820:80:2839:-207.886,0,-206.176	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:415:415,0:415:14765:0:0:0,-124.927,-1328.6	0/1:343:203,140:203:7260:140:4876:-335.744,0,-550.2	0/0:170:162,3:162:5724:3:108:0,-39.9546,-503.891	0/0:123:123,0:123:4358:0:0:0,-37.0267,-392.397	0/1:228:144,84:144:5118:84:2940:-196.204,0,-392.129	0/0:326:324,2:324:11543:2:72:0,-91.3015,-1031.91	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:198:198,0:198:7051:0:0:0,-59.6039,-634.607	0/1:101:51,50:51:1811:50:1747:-127.109,0,-132.867	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:164:164,0:164:5804:0:0:0,-49.3689,-522.479	0/1:82:44,38:44:1554:38:1339:-96.1248,0,-115.466	0/0:195:195,0:195:6883:0:0:0,-58.7008,-619.537	0/0:234:234,0:234:8354:0:0:0,-70.441,-751.868	0/0:275:275,0:275:9759:0:0:0,-82.7832,-878.106	0/0:309:309,0:309:11015:0:0:0,-93.0183,-991.248	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:192:192,0:192:6874:0:0:0,-57.7978,-618.727	0/1:162:97,65:97:3458:65:2250:-153.996,0,-262.665	0/0:312:312,0:312:11107:0:0:0,-93.9214,-999.527	0/0:121:121,0:121:4298:0:0:0,-36.4246,-386.999	0/0:79:79,0:79:2810:0:0:0,-23.7814,-253.139	0/1:75:31,44:31:1100:44:1560:-118.114,0,-76.733	0/0:157:155,1:155:5521:1:32:0,-44.1012,-493.796	0/1:35:26,9:26:927:9:316:-18.2428,0,-73.2113	0/0:80:80,0:80:2829:0:0:0,-24.0824,-254.849	0/0:89:89,0:89:3162:0:0:0,-26.7917,-284.776	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:142:66,76:66:2351:76:2660:-196.903,0,-169.093	0/1:41:16,25:16:567:25:880:-67.1755,0,-39.0185	0/0:231:231,0:231:8205:0:0:0,-69.5379,-738.467	0/0:99:99,0:99:3535:0:0:0,-29.802,-318.359
chr02	11540666	.	CGTT	CGTC,TGTC	225057	PASS	AB=0.530214,0.465887;ABP=27.4171,34.122;AC=158,30;AF=0.840426,0.159574;AN=188;AO=9448,1441;CIGAR=3M1X,1X2M1X;DP=10945;DPB=10943.8;DPRA=0,0.989333;EPP=20519.1,3132.1;EPPR=5.18177;GTI=3;LEN=1,4;MEANALT=1.89362,2.47222;MQM=43.3381,30.1659;MQMR=60;NS=94;NUMALT=2;ODDS=3.89269;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=336969,50965;QR=30;RO=1;RPL=9448,1441;RPP=20519.1,3132.1;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=20519.1,3132.1;SAR=9448,1441;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:91:0,91,0:0:0:91,0:3227,0:-278.032,-27.3937,0,-278.032,-27.3937,-278.032	1/1:69:0,69,0:0:0:69,0:2461,0:-213.966,-20.7711,0,-213.966,-20.7711,-213.966	1/1:150:0,148,1:0:0:148,1:5255,36:-454.685,-44.5524,0,-452.524,-42.3584,-452.223	1/1:187:0,186,0:0:0:186,0:6669,0:-589.464,-55.9916,0,-589.464,-55.9916,-589.464	1/2:80:0,51,28:0:0:51,28:1832,988:-208.014,-63.1675,-47.815,-144.803,0,-136.375	1/2:74:0,39,35:0:0:39,35:1385,1238:-183.194,-74.268,-62.5278,-109.23,0,-98.6944	1/1:157:0,156,0:0:0:156,0:5555,0:-492.04,-46.9607,0,-492.04,-46.9607,-492.04	1/1:174:0,173,0:0:0:173,0:6156,0:-533.906,-52.0782,0,-533.906,-52.0782,-533.906	1/1:209:0,208,0:0:0:208,0:7427,0:-641.058,-62.6142,0,-641.058,-62.6142,-641.058	1/1:168:0,168,0:0:0:168,0:5998,0:-529.646,-50.573,0,-529.646,-50.573,-529.646	1/1:83:0,82,0:0:0:82,0:2917,0:-256.707,-24.6845,0,-256.707,-24.6845,-256.707	1/1:121:0,119,0:0:0:119,0:4231,0:-365.69,-35.8226,0,-365.69,-35.8226,-365.69	1/1:92:0,92,0:0:0:92,0:3304,0:-285.756,-27.6948,0,-285.756,-27.6948,-285.756	1/2:115:0,62,53:0:0:62,53:2217,1872:-291.565,-116.541,-97.8774,-175.333,0,-159.378	1/2:75:0,36,38:0:0:36,38:1288,1359:-192.019,-89.9554,-79.1183,-102.081,0,-90.6416	1/2:62:0,32,29:0:0:32,29:1152,1020:-157.078,-65.8282,-56.1952,-91.3202,0,-82.5903	1/1:91:0,88,1:0:0:88,1:3134,36:-272.025,-26.4906,0,-269.864,-24.3253,-269.563	1/2:60:0,23,37:0:0:23,37:824,1324:-142.941,-80.1898,-73.2661,-63.0635,0,-51.9254	1/1:64:0,63,0:0:0:63,0:2264,0:-195.565,-18.9649,0,-195.565,-18.9649,-195.565	1/2:171:0,72,99:0:0:72,99:2535,3516:-439.884,-237.318,-215.644,-202.893,0,-173.091	1/2:179:0,95,83:0:0:95,83:3367,2923:-454.571,-187.81,-159.212,-266.784,0,-241.798	1/1:91:0,90,0:0:0:90,0:3232,0:-287.756,-27.0927,0,-287.756,-27.0927,-287.756	1/1:60:0,60,0:0:0:60,0:2118,0:-188.199,-18.0618,0,-188.199,-18.0618,-188.199	1/2:178:0,132,46:0:0:132,46:4711,1614:-475.819,-104.635,-64.899,-371.486,0,-357.638	1/1:89:0,89,0:0:0:89,0:3159,0:-277.825,-26.7917,0,-277.825,-26.7917,-277.825	1/1:310:0,308,0:0:0:308,0:11011,0:-976.649,-92.7172,0,-976.649,-92.7172,-976.649	1/1:298:0,297,0:0:0:297,0:10584,0:-929.384,-89.4059,0,-929.384,-89.4059,-929.384	1/1:53:0,52,0:0:0:52,0:1864,0:-162.784,-15.6536,0,-162.784,-15.6536,-162.784	1/1:269:1,265,0:1:30:265,0:9426,0:-834.751,-77.3743,0,-835.052,-79.773,-837.45	1/1:159:0,157,0:0:0:157,0:5610,0:-489.116,-47.2617,0,-489.116,-47.2617,-489.116	1/2:143:0,68,75:0:0:68,75:2429,2654:-375.084,-181.139,-160.669,-194.272,0,-171.695	1/1:10:0,10,0:0:0:10,0:360,0:-32.0412,-3.0103,0,-32.0412,-3.0103,-32.0412	1/1:31:0,31,0:0:0:31,0:1097,0:-95.6235,-9.33193,0,-95.6235,-9.33193,-95.6235	1/1:1:0,1,0:0:0:1,0:36,0:-3.4807,-0.30103,0,-3.4807,-0.30103,-3.4807	1/2:12:0,8,4:0:0:8,4:288,144:-30.6762,-7.95641,-5.54817,-23.0008,0,-21.7967	1/1:16:0,16,0:0:0:16,0:568,0:-49.4934,-4.81648,0,-49.4934,-4.81648,-49.4934	1/1:274:0,273,0:0:0:273,0:9736,0:-862.47,-82.1812,0,-862.47,-82.1812,-862.47	1/1:45:0,44,0:0:0:44,0:1554,0:-136.176,-13.2453,0,-136.176,-13.2453,-136.176	1/2:113:0,60,52:0:0:60,52:2130,1847:-274.635,-109.609,-91.5467,-165.088,0,-149.435	1/2:2:0,1,1:0:0:1,1:36,35:-5.47963,-2.57974,-2.27871,-3.21998,0,-2.91895	1/1:147:0,147,0:0:0:147,0:5220,0:-458.054,-44.2514,0,-458.054,-44.2514,-458.054	1/1:65:0,64,0:0:0:64,0:2269,0:-198.733,-19.2659,0,-198.733,-19.2659,-198.733	1/1:128:0,126,0:0:0:126,0:4442,0:-387.041,-37.9298,0,-387.041,-37.9298,-387.041	1/1:108:0,106,0:0:0:106,0:3785,0:-334.984,-31.9092,0,-334.984,-31.9092,-334.984	1/2:86:0,46,39:0:0:46,39:1652,1364:-224.497,-92.3899,-78.5425,-132.154,0,-120.414	1/1:288:0,286,0:0:0:286,0:10188,0:-906.54,-86.0946,0,-906.54,-86.0946,-906.54	1/2:119:0,70,49:0:0:70,49:2460,1724:-295.934,-102.979,-81.9066,-193.252,0,-178.502	1/1:162:0,162,0:0:0:162,0:5816,0:-514.807,-48.7669,0,-514.807,-48.7669,-514.807	1/1:94:0,94,0:0:0:94,0:3346,0:-296.958,-28.2968,0,-296.958,-28.2968,-296.958	1/1:85:0,85,0:0:0:85,0:3056,0:-271.288,-25.5876,0,-271.288,-25.5876,-271.288	1/1:225:0,225,0:0:0:225,0:8009,0:-710.347,-67.7318,0,-710.347,-67.7318,-710.347	1/2:12:0,6,6:0:0:6,6:216,215:-32.2084,-14.8263,-13.0202,-17.7107,0,-15.9045	1/1:90:0,89,1:0:0:89,1:3181,36:-275.455,-26.7917,0,-273.295,-24.3565,-272.994	1/1:38:0,38,0:0:0:38,0:1364,0:-121.623,-11.4391,0,-121.623,-11.4391,-121.623	1/2:29:0,20,9:0:0:20,9:705,321:-73.7514,-18.8727,-12.8521,-55.1651,0,-52.4559	1/2:151:0,68,83:0:0:68,83:2414,2933:-379.379,-189.368,-168.898,-190.329,0,-165.343	1/1:122:0,122,0:0:0:122,0:4327,0:-383.407,-3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chr02	11543083	.	C	G	73062.6	PASS	AB=0.514573;ABP=4.84569;AC=157;AF=0.853261;AN=184;AO=3305;CIGAR=1X;DP=3795;DPB=3795;DPRA=0;EPP=7153.69;EPPR=1051.85;GTI=1;LEN=1;MEANALT=1.03261;MQM=59.6166;MQMR=59.6899;NS=92;NUMALT=1;ODDS=2.06632;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117828;QR=17311;RO=487;RPL=3;RPP=7153.69;RPPR=1051.85;RPR=3302;RUN=1;SAF=3305;SAP=7179.73;SAR=0;SRF=487;SRP=1060.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:854:-77.142,-7.22472,0	1/1:42:0,42:0:0:42:1487:-134.071,-12.6433,0	1/1:70:0,70:0:0:70:2499:-225.113,-21.0721,0	1/1:55:0,55:0:0:55:1976:-178.108,-16.5567,0	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.4272	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:40:0,40:0:0:40:1419:-127.982,-12.0412,0	1/1:57:0,57:0:0:57:2040:-183.838,-17.1587,0	1/1:47:0,47:0:0:47:1676:-151.122,-14.1484,0	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	1/1:64:0,64:0:0:64:2263:-203.54,-19.2659,0	1/1:48:0,48:0:0:48:1703:-153.484,-14.4494,0	0/1:37:19,18:19:680:18:648:-47.5092,0,-50.3911	0/1:53:28,25:28:992:25:887:-64.1935,0,-73.6315	0/1:45:26,19:26:924:19:680:-47.9828,0,-69.9137	1/1:20:1,19:1:36:19:680:-57.9024,-2.42233,0	0/1:17:8,9:8:288:9:316:-23.6613,0,-21.1499	1/1:15:0,15:0:0:15:536:-48.5666,-4.51545,0	0/1:53:25,28:25:896:28:1008:-75.0818,0,-65.0058	0/1:90:56,34:56:1977:34:1212:-82.2936,0,-151.033	1/1:22:0,22:0:0:22:788:-71.243,-6.62266,0	1/1:60:0,60:0:0:60:2142:-193.01,-18.0618,0	0/1:18:4,14:4:144:14:498:-39.7353,0,-7.89508	1/1:21:0,21:0:0:21:739:-66.8278,-6.32163,0	1/1:101:0,100:0:0:100:3576:-321.653,-30.103,0	1/1:34:0,34:0:0:34:1208:-109.02,-10.235,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:50:0,50:0:0:50:1777:-160.21,-15.0515,0	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	0/1:34:16,18:16:572:18:635:-47.2362,0,-41.5784	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:146:0,145:0:0:145:5191:-466.959,-43.6494,0	1/1:59:2,56:2:72:56:1980:-171.607,-10.9828,0	0/1:43:24,19:24:846:19:671:-47.7715,0,-63.3556	.:.:.:.:.:.:.:.	1/1:18:0,18:0:0:18:626:-56.6581,-5.41854,0	1/1:16:0,16:0:0:16:572:-51.8088,-4.81648,0	1/1:58:0,58:0:0:58:2084:-187.825,-17.4597,0	1/1:40:0,40:0:0:40:1428:-128.815,-12.0412,0	0/1:47:25,22:25:892:22:792:-57.4573,0,-66.4513	1/1:29:0,29:0:0:29:1040:-93.9125,-8.72987,0	0/1:31:9,22:9:320:22:784:-61.5487,0,-19.7995	1/1:58:1,57:1:36:57:2048:-180.977,-13.8615,0	1/1:30:0,30:0:0:30:1051:-94.8927,-9.0309,0	1/1:68:0,68:0:0:68:2432:-219.126,-20.47,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	1/1:59:0,59:0:0:59:2108:-189.972,-17.7608,0	1/1:28:0,28:0:0:28:996:-89.8176,-8.42884,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:50:32,18:32:1144:18:648:-43.6004,0,-88.218	1/1:6:0,6:0:0:6:204:-18.689,-1.80618,0	0/1:4:1,3:1:36:3:108:-8.86917,0,-2.39415	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:31:0,31:0:0:31:1104:-99.655,-9.33193,0	0/1:68:31,37:31:1116:37:1316:-98.2718,0,-80.2817	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:151:0,151:0:0:151:5377:-484.044,-45.4555,0	0/1:80:34,46:34:1216:46:1633:-123.174,0,-85.6642	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:23:0,23:0:0:23:803:-72.5814,-6.92369,0	0/1:33:20,13:20:708:13:464:-32.1263,0,-54.1063	1/1:49:0,49:0:0:49:1752:-157.962,-14.7505,0	1/1:13:0,13:0:0:13:452:-41.0046,-3.91339,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:31:16,15:16:567:15:523:-38.0656,0,-42.0284	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	1/1:17:0,17:0:0:17:608:-55.0274,-5.11751,0	0/1:51:12,39:12:424:39:1377:-108.857,0,-23.1439	1/1:70:0,70:0:0:70:2496:-224.874,-21.0721,0	1/1:93:0,93:0:0:93:3311:-298.069,-27.9958,0	1/1:47:0,47:0:0:47:1688:-152.187,-14.1484,0	1/1:85:0,85:0:0:85:3027:-271.912,-25.5876,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:34:0,34:0:0:34:1216:-109.742,-10.235,0	0/1:36:16,20:16:572:20:720:-54.2835,0,-40.9701	1/1:95:0,95:0:0:95:3385:-304.831,-28.5979,0	1/1:57:0,57:0:0:57:2032:-183.15,-17.1587,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:18:12,6:12:424:6:216:-14.372,0,-33.0779	1/1:77:0,77:0:0:77:2751:-247.824,-23.1793,0	0/1:14:5,9:5:176:9:315:-24.4728,0,-11.9643	1/1:46:0,46:0:0:46:1640:-147.882,-13.8474,0	1/1:44:0,44:0:0:44:1576:-142.072,-13.2453,0	1/1:26:0,26:0:0:26:932:-84.1942,-7.82678,0	0/1:63:18,45:18:648:45:1603:-125.463,0,-39.687	0/1:38:24,14:24:821:14:504:-34.2542,0,-62.7503	1/1:160:0,160:0:0:160:5685:-511.75,-48.1648,0	1/1:65:0,65:0:0:65:2328:-209.714,-19.567,0
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chr02	11543123	.	A	G	71621.4	PASS	AB=0.514257;ABP=4.74394;AC=157;AF=0.853261;AN=184;AO=3248;CIGAR=1X;DP=3728;DPB=3728;DPRA=0;EPP=7047.27;EPPR=1045.32;GTI=1;LEN=1;MEANALT=1;MQM=59.6253;MQMR=59.775;NS=92;NUMALT=1;ODDS=1.93927;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115710;QR=17218;RO=480;RPL=3248;RPP=7055.95;RPPR=1045.32;RPR=0;RUN=1;SAF=3247;SAP=7047.27;SAR=1;SRF=480;SRP=1045.32;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:752:-67.9546,-6.32163,0	1/1:43:0,43:0:0:43:1529:-137.689,-12.9443,0	1/1:67:0,67:0:0:67:2412:-217.287,-20.169,0	1/1:54:0,54:0:0:54:1923:-173.341,-16.2556,0	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.7177	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:40:0,40:0:0:40:1428:-128.793,-12.0412,0	1/1:54:0,54:0:0:54:1904:-171.619,-16.2556,0	1/1:46:0,46:0:0:46:1640:-147.883,-13.8474,0	1/1:35:0,35:0:0:35:1240:-111.904,-10.5361,0	1/1:61:0,61:0:0:61:2164:-194.633,-18.3628,0	1/1:46:0,46:0:0:46:1652:-148.889,-13.8474,0	0/1:36:19,17:19:684:17:612:-44.5764,0,-51.0532	0/1:52:28,24:28:1004:24:856:-61.7075,0,-75.0131	0/1:45:25,20:25:896:20:707:-50.4082,0,-67.3964	1/1:20:0,20:0:0:20:720:-65.1003,-6.0206,0	0/1:17:8,9:8:284:9:320:-24.0248,0,-20.7858	1/1:14:0,14:0:0:14:496:-44.9661,-4.21442,0	0/1:52:25,27:25:900:27:972:-72.1443,0,-65.6675	0/1:87:54,33:54:1940:33:1176:-79.9582,0,-148.68	1/1:22:0,22:0:0:22:780:-70.5212,-6.62266,0	1/1:60:0,60:0:0:60:2131:-191.994,-18.0618,0	0/1:17:4,13:4:144:13:464:-36.9754,0,-8.19611	1/1:19:0,19:0:0:19:676:-61.1634,-5.71957,0	1/1:102:0,102:0:0:102:3625:-326.412,-30.7051,0	1/1:33:0,33:0:0:33:1171:-105.687,-9.93399,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:49:0,49:0:0:49:1748:-157.603,-14.7505,0	1/1:24:0,24:0:0:24:841:-76.0064,-7.22472,0	0/1:33:15,18:15:536:18:640:-47.986,0,-38.6408	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:145:0,145:0:0:145:5167:-465.163,-43.6494,0	1/1:58:2,56:2:72:56:1996:-173.045,-10.623,0	0/1:42:22,20:22:788:20:716:-52.1245,0,-58.6015	.:.:.:.:.:.:.:.	1/1:17:0,17:0:0:17:612:-55.4088,-5.11751,0	1/1:18:0,18:0:0:18:647:-58.558,-5.41854,0	1/1:54:0,54:0:0:54:1925:-173.52,-16.2556,0	1/1:39:0,39:0:0:39:1396:-125.937,-11.7402,0	0/1:48:25,23:25:900:23:812:-58.9515,0,-66.8716	1/1:29:0,29:0:0:29:1021:-92.1984,-8.72987,0	0/1:30:9,21:9:324:21:741:-57.9725,0,-20.4641	1/1:63:1,62:1:36:62:2200:-194.652,-15.3666,0	1/1:30:0,30:0:0:30:1072:-96.7832,-9.0309,0	1/1:68:0,68:0:0:68:2432:-219.128,-20.47,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:59:0,59:0:0:59:2097:-188.989,-17.7608,0	1/1:25:0,25:0:0:25:896:-80.9548,-7.52575,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:49:32,17:32:1152:17:608:-40.3016,0,-89.2397	1/1:6:0,6:0:0:6:216:-19.7797,-1.80618,0	0/1:4:1,3:1:36:3:108:-8.86917,0,-2.39415	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	1/1:29:0,29:0:0:29:1026:-92.6375,-8.72987,0	0/1:66:31,35:31:1097:35:1252:-93.1171,0,-79.17	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:146:0,146:0:0:146:5199:-468.045,-43.9504,0	0/1:80:34,46:34:1224:46:1643:-124.075,0,-86.3846	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:18:0,18:0:0:18:617:-55.849,-5.41854,0	0/1:33:20,13:20:705:13:468:-32.4672,0,-53.8326	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:12:0,12:0:0:12:424:-38.4899,-3.61236,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:29:14,15:14:504:15:536:-39.844,0,-36.9682	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:17:0,17:0:0:17:604:-54.666,-5.11751,0	0/1:51:12,39:12:432:39:1387:-109.758,0,-23.8687	1/1:67:0,67:0:0:67:2346:-211.386,-20.169,0	1/1:92:0,92:0:0:92:3281:-295.369,-27.6948,0	1/1:44:0,44:0:0:44:1572:-141.751,-13.2453,0	1/1:85:0,85:0:0:85:3052:-274.16,-25.5876,0	1/1:5:0,5:0:0:5:180:-16.5231,-1.50515,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:33:15,18:15:540:18:644:-48.3484,0,-38.9963	1/1:94:0,94:0:0:94:3342:-300.924,-28.2968,0	1/1:56:0,56:0:0:56:2012:-181.351,-16.8577,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	1/1:75:0,75:0:0:75:2674:-240.897,-22.5773,0	0/1:14:5,9:5:176:9:320:-24.9279,0,-11.9643	1/1:44:0,44:0:0:44:1539:-138.781,-13.2453,0	1/1:43:0,43:0:0:43:1540:-138.838,-12.9443,0	1/1:25:0,25:0:0:25:887:-80.1435,-7.52575,0	0/1:62:18,44:18:648:44:1564:-122.386,0,-39.988	0/1:43:27,16:27:972:16:576:-39.226,0,-74.8406	1/1:154:0,154:0:0:154:5503:-495.381,-46.3586,0	1/1:63:0,63:0:0:63:2241:-201.891,-18.9649,0
chr02	11687076	.	T	C	233076	PASS	AB=0.524623;ABP=16.2703;AC=158;AF=0.840426;AN=188;AO=9558;CIGAR=1X;DP=10777;DPB=10777;DPRA=0;EPP=20723.2;EPPR=2634.83;GTI=4;LEN=1;MEANALT=1.07447;MQM=42.0799;MQMR=52.5908;NS=94;NUMALT=1;ODDS=1.17271;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=340640;QR=43412;RO=1212;RPL=8158;RPP=10378.9;RPPR=2266.53;RPR=1400;RUN=1;SAF=8162;SAP=10403.4;SAR=1396;SRF=1168;SRP=2266.53;SRR=44;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1384:-117.13,-11.7402,0	1/1:140:0,140:0:0:140:4976:-421.124,-42.1442,0	1/1:203:0,203:0:0:203:7203:-606.201,-61.1091,0	1/1:120:0,120:0:0:120:4283:-369.681,-36.1236,0	0/1:122:65,57:65:2340:57:2036:-136.032,0,-172.076	0/1:95:40,55:40:1427:55:1944:-135.97,0,-99.8088	1/1:165:0,165:0:0:165:5903:-505.144,-49.67,0	1/1:138:0,138:0:0:138:4922:-418.226,-41.5421,0	1/1:98:0,98:0:0:98:3503:-295.193,-29.5009,0	1/1:102:0,102:0:0:102:3659:-312.994,-30.7051,0	1/1:86:0,86:0:0:86:3062:-260.481,-25.8886,0	1/1:66:0,65:0:0:65:2323:-196.251,-19.567,0	1/1:57:0,57:0:0:57:2009:-170.189,-17.1587,0	0/1:69:28,41:28:1004:41:1472:-102.887,0,-69.3942	0/1:55:29,26:29:1044:26:924:-63.5162,0,-77.5297	0/1:40:17,23:17:608:23:828:-58.5552,0,-42.8764	1/1:86:0,86:0:0:86:3072:-258.625,-25.8886,0	0/1:35:20,15:20:716:15:532:-35.0187,0,-53.8985	1/1:52:0,52:0:0:52:1847:-157.121,-15.6536,0	0/1:239:133,106:133:4772:106:3804:-256.689,0,-355.62	0/1:128:53,75:53:1899:75:2673:-187.523,0,-131.968	1/1:240:0,239:0:0:239:8515:-754.155,-71.9462,0	1/1:86:1,85:1:36:85:3031:-257.878,-22.2954,0	0/1:134:63,71:63:2268:71:2539:-174.435,0,-163.199	1/1:49:0,49:0:0:49:1752:-146.96,-14.7505,0	1/1:576:2,574:2:72:574:20403:-1799.39,-166.557,0	1/1:272:0,272:0:0:272:9684:-820.002,-81.8802,0	1/1:42:0,42:0:0:42:1488:-124.637,-12.6433,0	1/1:692:0,691:0:0:691:24659:-2182.21,-208.012,0	1/1:125:2,123:2:72:123:4365:-362.422,-30.8092,0	0/1:137:61,75:61:2188:75:2692:-190.153,0,-155.322	1/1:14:0,14:0:0:14:500:-42.3903,-4.21442,0	1/1:12:0,12:0:0:12:424:-36.4073,-3.61236,0	1/1:2:0,2:0:0:2:72:-6.43644,-0.60206,0	0/1:7:2,5:2:72:5:180:-12.9901,0,-4.71232	1/1:5:0,5:0:0:5:180:-15.5448,-1.50515,0	1/1:365:0,365:0:0:365:13012:-1150.47,-109.876,0	1/1:167:0,167:0:0:167:5964:-504.65,-50.272,0	0/1:77:37,40:37:1320:40:1432:-97.931,0,-95.6008	0/1:5:1,4:1:36:4:144:-11.029,0,-2.08408	1/1:131:0,131:0:0:131:4678:-394.54,-39.4349,0	1/1:46:0,46:0:0:46:1634:-137.027,-13.8474,0	1/1:116:0,116:0:0:116:4116:-347.301,-34.9195,0	1/1:87:0,87:0:0:87:3093:-265.656,-26.1896,0	0/1:53:27,26:27:972:26:896:-61.0185,0,-71.5805	1/1:176:0,176:0:0:176:6275:-555.732,-52.9813,0	0/1:138:63,75:63:2255:75:2658:-184.319,0,-160.807	1/1:193:5,188:5:180:188:6707:-561.354,-41.5702,0	1/1:101:0,101:0:0:101:3611:-311.772,-30.404,0	1/1:172:0,172:0:0:172:6134:-527.587,-51.7772,0	1/1:299:0,299:0:0:299:10644:-941.938,-90.008,0	0/1:4:2,2:2:72:2:72:-5.35941,0,-5.62776	1/1:127:0,127:0:0:127:4536:-383.136,-38.2308,0	1/1:83:0,83:0:0:83:2946:-262.166,-24.9855,0	0/1:15:4,11:4:144:11:376:-27.7243,0,-8.76672	0/1:154:71,83:71:2532:83:2976:-204.945,0,-180.636	1/1:70:0,70:0:0:70:2502:-214.643,-21.0721,0	0/1:19:5,14:5:176:14:496:-38.0438,0,-10.4654	0/1:32:19,13:19:668:13:449:-30.8834,0,-50.7983	1/1:100:0,100:0:0:100:3524:-297.989,-30.103,0	0/1:113:59,54:59:2120:54:1932:-132.942,0,-156.731	1/1:6:0,6:0:0:6:216:-18.9384,-1.80618,0	1/1:392:0,392:0:0:392:13976:-1235.17,-118.004,0	0/1:194:104,90:104:3740:90:3213:-218.355,0,-277.705	1/1:76:3,73:3:108:73:2584:-208.879,-12.8284,0	1/1:117:0,116:0:0:116:4159:-357.967,-34.9195,0	0/1:119:54,65:54:1929:65:2305:-161.74,0,-136.935	1/1:103:1,102:1:36:102:3664:-309.626,-27.4129,0	1/1:46:0,46:0:0:46:1656:-139.057,-13.8474,0	1/1:77:0,77:0:0:77:2764:-232.833,-23.1793,0	0/1:127:46,81:46:1620:81:2896:-217.801,0,-107.653	1/1:22:0,22:0:0:22:788:-66.2158,-6.62266,0	1/1:97:0,97:0:0:97:3454:-292.345,-29.1999,0	0/1:54:26,28:26:932:28:996:-68.0165,0,-67.7105	1/1:203:0,202:0:0:202:7202:-609.569,-60.8081,0	1/1:183:0,182:0:0:182:6499:-559.059,-54.7875,0	1/1:90:1,89:1:36:89:3169:-264.861,-23.5035,0	1/1:129:0,129:0:0:129:4601:-389.411,-38.8329,0	1/1:5:0,5:0:0:5:180:-15.583,-1.50515,0	1/1:88:0,88:0:0:88:3128:-264.935,-26.4906,0	0/1:75:32,43:32:1144:43:1540:-108.424,0,-80.3567	1/1:263:1,262:1:36:262:9340:-798.965,-75.5777,0	1/1:92:0,92:0:0:92:3255:-279.572,-27.6948,0	1/1:43:0,43:0:0:43:1536:-132.372,-12.9443,0	0/1:71:31,40:31:1107:40:1407:-99.9003,0,-78.2922	1/1:123:0,123:0:0:123:4398:-376.806,-37.0267,0	0/1:39:23,16:23:824:16:561:-34.8639,0,-62.5689	1/1:79:0,79:0:0:79:2781:-235.09,-23.7814,0	1/1:62:0,62:0:0:62:2220:-188.152,-18.6639,0	1/1:37:0,37:0:0:37:1324:-111.645,-11.1381,0	0/1:110:45,65:45:1620:65:2312:-162.644,0,-112.269	0/1:58:36,22:36:1287:22:783:-50.5766,0,-98.2343	1/1:125:0,125:0:0:125:4476:-382.828,-37.6288,0	1/1:101:0,101:0:0:101:3607:-310.928,-30.404,0
chr02	11870167	.	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chr02	12066841	.	C	T	16354.9	PASS	AB=0.503391;ABP=3.20173;AC=31;AF=0.164894;AN=188;AO=976;CIGAR=1X;DP=7532;DPB=7532;DPRA=0.974439;EPP=2087.77;EPPR=13641.6;GTI=2;LEN=1;MEANALT=1.07895;MQM=54.9652;MQMR=59.9313;NS=94;NUMALT=1;ODDS=1.87899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34982;QR=233884;RO=6550;RPL=4;RPP=2087.77;RPPR=13641.6;RPR=972;RUN=1;SAF=976;SAP=2122.37;SAR=0;SRF=6550;SRP=14226.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:104:103,1:103:3668:1:36:0,-27.7126,-326.727	0/0:111:111,0:111:3975:0:0:0,-33.4143,-357.94	0/0:136:136,0:136:4841:0:0:0,-40.9401,-435.835	0/1:67:30,37:30:1080:37:1328:-99.5198,0,-77.3442	0/1:76:29,47:29:1040:47:1688:-129.163,0,-71.0361	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.975	0/0:141:139,0:139:4955:0:0:0,-41.8432,-445.812	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.033	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/1:53:34,18:34:1216:18:648:-42.7202,0,-93.8789	0/1:48:26,22:26:936:22:788:-56.7077,0,-70.11	0/1:46:21,25:21:756:25:887:-66.2219,0,-54.5198	0/0:60:60,0:60:2125:0:0:0,-18.0618,-191.513	0/1:28:15,13:15:540:13:468:-33.9871,0,-40.5077	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.292	0/1:68:27,41:27:968:41:1476:-112.529,0,-66.9673	0/1:94:59,35:59:2108:35:1260:-85.2915,0,-161.686	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.479	0/0:89:88,1:88:3121:1:36:0,-23.1971,-277.522	0/1:114:57,57:57:2032:57:2044:-149.728,0,-148.828	0/0:72:72,0:72:2559:0:0:0,-21.6742,-230.556	0/0:239:238,1:238:8521:1:36:0,-68.3516,-763.279	0/0:208:208,0:208:7444:0:0:0,-62.6142,-670.005	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:242:240,1:240:8567:1:36:0,-69.2383,-767.497	0/0:180:180,0:180:6402:0:0:0,-54.1854,-576.266	0/1:93:38,55:38:1368:55:1971:-149.491,0,-95.4217	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:5:3,2:3:108:2:72:-5.32453,0,-8.57002	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.139	0/0:158:158,0:158:5651:0:0:0,-47.5627,-508.707	0/0:192:192,0:192:6850:0:0:0,-57.7978,-616.56	0/1:51:20,31:20:720:31:1104:-84.2203,0,-49.7762	0/1:11:4,7:4:144:7:248:-19.3312,0,-10.0023	0/0:95:95,0:95:3386:0:0:0,-28.5978,-304.949	0/0:24:23,1:23:815:1:36:0,-3.63015,-70.0762	0/0:121:121,0:121:4328:0:0:0,-36.4246,-389.688	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5054	0/1:43:24,19:24:860:19:676:-48.164,0,-64.7775	0/0:107:107,0:107:3803:0:0:0,-32.2102,-342.453	0/1:102:42,60:42:1504:60:2152:-163.044,0,-104.95	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.879	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:201:200,1:200:7155:1:36:0,-56.9125,-640.392	0/0:118:118,0:118:4228:0:0:0,-35.5215,-380.696	1/1:3:0,3:0:0:3:108:-10.0648,-0.90309,0	0/0:193:193,0:193:6907:0:0:0,-58.0988,-621.677	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6023	0/1:15:7,8:7:244:8:288:-21.7249,0,-17.784	0/1:82:42,40:42:1500:40:1432:-104.363,0,-110.61	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/1:8:5,3:5:180:3:108:-7.65655,0,-14.1438	0/1:19:11,8:11:388:8:288:-20.5208,0,-29.5378	0/0:74:74,0:74:2626:0:0:0,-22.2762,-236.587	0/1:134:83,51:83:2976:51:1832:-124.654,0,-227.734	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:102:100,1:100:3588:1:36:0,-27.0941,-319.598	0/1:224:135,89:135:4814:89:3169:-217.719,0,-365.985	0/0:77:76,1:76:2719:1:36:0,-19.5847,-241.355	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:95:46,49:46:1644:49:1752:-129.203,0,-119.647	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.483	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:92:92,0:92:3272:0:0:0,-27.6948,-294.693	0/1:76:51,25:51:1819:25:900:-58.359,0,-141.106	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:131:131,0:131:4624:0:0:0,-39.4349,-416.327	0/1:56:10,46:10:360:46:1652:-131.949,0,-15.8866	0/0:114:114,0:114:4052:0:0:0,-34.3174,-364.864	0/0:101:101,0:101:3604:0:0:0,-30.404,-324.564	0/0:140:140,0:140:5007:0:0:0,-42.1442,-450.77	0/0:88:88,0:88:3139:0:0:0,-26.4906,-282.736	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:111:110,0:110:3931:0:0:0,-33.1133,-353.613	0/1:78:20,58:20:716:58:2075:-163.351,0,-41.284	0/0:111:111,0:111:3935:0:0:0,-33.4143,-354.343	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.358	0/0:36:36,0:36:1266:0:0:0,-10.8371,-114.241	0/1:47:23,24:23:828:24:864:-63.8537,0,-60.6957	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/1:21:11,10:11:396:10:360:-26.3889,0,-29.6611	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.747	0/0:58:58,0:58:2050:0:0:0,-17.4597,-184.764	0/0:35:35,0:35:1234:0:0:0,-10.536,-111.359	0/1:113:58,55:58:2084:55:1980:-144.274,0,-153.81	0/1:50:20,30:20:716:30:1076:-81.9925,0,-49.7162	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.475	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806
chr02	12282836	.	C	A	183854	PASS	AB=0.471801;ABP=19.4206;AC=160;AF=0.851064;AN=188;AO=8329;CIGAR=1X;DP=9596;DPB=9596;DPRA=51.5806;EPP=18089.2;EPPR=2734.72;GTI=2;LEN=1;MEANALT=1.05376;MQM=59.3104;MQMR=59.9984;NS=94;NUMALT=1;ODDS=5.18653;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=296464;QR=44675;RO=1258;RPL=0;RPP=18089.2;RPPR=2734.72;RPR=8329;RUN=1;SAF=0;SAP=18089.2;SAR=8329;SRF=0;SRP=2734.72;SRR=1258;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1773:-159.808,-15.0515,0	1/1:149:0,149:0:0:149:5307:-477.401,-44.8535,0	1/1:165:0,165:0:0:165:5888:-529.418,-49.67,0	1/1:236:0,236:0:0:236:8417:-756.794,-71.0431,0	0/1:86:40,46:40:1408:46:1643:-122.269,0,-101.126	0/1:59:37,22:37:1328:22:788:-53.2811,0,-102.061	1/1:175:0,175:0:0:175:6220:-559.829,-52.6803,0	1/1:178:0,177:0:0:177:6303:-566.788,-53.2823,0	1/1:87:0,87:0:0:87:3082:-277.512,-26.1896,0	1/1:107:0,105:0:0:105:3742:-336.539,-31.6082,0	1/1:50:0,50:0:0:50:1779:-160.331,-15.0515,0	1/1:68:0,68:0:0:68:2432:-219.064,-20.47,0	1/1:63:0,63:0:0:63:2256:-203.22,-18.9649,0	0/1:59:36,23:36:1280:23:815:-55.8784,0,-97.7425	0/1:39:18,21:18:639:21:748:-55.9051,0,-46.0981	0/1:51:24,27:24:843:27:951:-70.5069,0,-60.8355	1/1:57:0,57:0:0:57:2003:-180.409,-17.1587,0	0/1:36:17,19:17:604:19:684:-50.9054,0,-43.8535	1/1:25:0,25:0:0:25:900:-81.2493,-7.52575,0	0/1:225:135,90:135:4808:90:3204:-220.806,0,-365.144	0/1:146:82,64:82:2922:64:2247:-157.281,0,-219.264	1/1:144:0,144:0:0:144:5101:-459.123,-43.3483,0	1/1:121:0,121:0:0:121:4272:-384.598,-36.4246,0	0/1:135:58,73:58:2071:73:2600:-194.319,0,-146.866	1/1:94:0,94:0:0:94:3364:-302.906,-28.2968,0	1/1:351:0,351:0:0:351:12512:-1125.67,-105.662,0	1/1:192:0,192:0:0:192:6851:-616.571,-57.7978,0	1/1:32:0,32:0:0:32:1144:-103.247,-9.63296,0	1/1:310:0,310:0:0:310:11054:-994.425,-93.3193,0	1/1:142:0,142:0:0:142:5053:-453.442,-42.7463,0	0/1:134:82,52:82:2928:52:1830:-124.614,0,-223.417	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:25:0,25:0:0:25:888:-80.1716,-7.52575,0	1/1:8:0,8:0:0:8:288:-26.195,-2.40824,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:181:0,181:0:0:181:6399:-575.685,-54.4864,0	1/1:220:0,220:0:0:220:7826:-703.234,-66.2266,0	0/1:54:29,25:29:1032:25:887:-63.8925,0,-76.9379	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:176:0,175:0:0:175:6207:-557.209,-52.6803,0	1/1:30:0,30:0:0:30:1067:-96.2739,-9.0309,0	1/1:158:0,158:0:0:158:5647:-508.175,-47.5627,0	1/1:48:0,48:0:0:48:1710:-154.129,-14.4494,0	0/1:61:27,34:27:951:34:1186:-88.6619,0,-67.5415	1/1:102:0,102:0:0:102:3656:-329.198,-30.7051,0	0/1:150:69,81:69:2451:81:2887:-214.698,0,-175.69	1/1:158:1,157:1:36:157:5567:-497.402,-43.9645,0	1/1:99:0,99:0:0:99:3526:-317.46,-29.802,0	1/1:175:0,175:0:0:175:6216:-559.418,-52.6803,0	1/1:275:0,275:0:0:275:9829:-883.9,-82.7833,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:219:0,219:0:0:219:7813:-702.313,-65.9256,0	1/1:31:0,31:0:0:31:1116:-100.727,-9.33193,0	0/1:10:1,9:1:36:9:315:-25.6769,0,-0.587975	0/1:151:85,66:85:3022:66:2327:-164.156,0,-226.755	1/1:86:0,86:0:0:86:3066:-276.094,-25.8886,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:20:14,6:14:481:6:216:-13.7616,0,-37.5945	1/1:30:0,30:0:0:30:1058:-95.5071,-9.0309,0	0/1:91:51,40:51:1786:40:1427:-101.271,0,-133.627	1/1:7:0,7:0:0:7:248:-22.6364,-2.10721,0	1/1:222:1,221:1:36:221:7871:-704.761,-63.2304,0	0/1:231:101,130:101:3602:130:4632:-347.334,0,-254.848	1/1:62:0,62:0:0:62:2216:-199.631,-18.6639,0	1/1:72:0,72:0:0:72:2567:-230.862,-21.6742,0	0/1:174:81,93:81:2854:93:3294:-243.986,0,-204.72	1/1:141:2,139:2:72:139:4967:-440.287,-35.6095,0	1/1:10:0,10:0:0:10:356:-32.3586,-3.0103,0	1/1:92:1,91:1:36:91:3247:-288.701,-24.0965,0	0/1:71:36,35:36:1274:35:1222:-88.8926,0,-93.5884	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:170:0,170:0:0:170:6044:-543.756,-51.1751,0	0/1:94:46,48:46:1627:48:1719:-126.659,0,-118.421	1/1:142:0,142:0:0:142:5062:-455.611,-42.7463,0	1/1:167:0,167:0:0:167:5947:-534.192,-50.272,0	1/1:74:0,73:0:0:73:2604:-234.361,-21.9752,0	1/1:111:0,111:0:0:111:3933:-354.064,-33.4143,0	1/1:13:0,13:0:0:13:464:-42.0615,-3.91339,0	1/1:124:0,124:0:0:124:4446:-399.871,-37.3277,0	0/1:82:54,28:54:1919:28:991:-63.4416,0,-148.302	1/1:327:0,327:0:0:327:11617:-1045.1,-98.4368,0	1/1:93:0,93:0:0:93:3297:-296.936,-27.9958,0	1/1:50:0,50:0:0:50:1791:-161.127,-15.0515,0	0/1:56:25,31:25:892:31:1111:-83.4433,0,-63.742	1/1:101:0,101:0:0:101:3585:-322.761,-30.404,0	0/1:36:22,14:22:783:14:504:-34.7891,0,-59.9559	1/1:82:0,82:0:0:82:2913:-262.264,-24.6845,0	1/1:64:0,64:0:0:64:2269:-204.263,-19.2659,0	1/1:26:0,26:0:0:26:928:-83.8158,-7.82678,0	0/1:79:45,34:45:1607:34:1211:-85.5141,0,-121.138	0/1:46:36,10:36:1275:10:360:-18.8969,0,-101.205	1/1:137:0,137:0:0:137:4882:-439.432,-41.2411,0	1/1:84:0,84:0:0:84:3007:-270.563,-25.2865,0
chr02	12282852	.	GATC	TATG,GATG	217412	PASS	AB=0.476365,0.51956;ABP=14.9171,11.1653;AC=160,28;AF=0.851064,0.148936;AN=188;AO=8628,1282;CIGAR=1X2M1X,3M1X;DP=9940;DPB=9940;DPRA=53.4301,0.917172;EPP=18738.5,2786.84;EPPR=5.18177;GTI=2;LEN=4,1;MEANALT=1.63441,2.25806;MQM=59.2804,59.9548;MQMR=60;NS=94;NUMALT=2;ODDS=4.31614;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=304412,45546;QR=36;RO=1;RPL=0,0;RPP=18738.5,2786.84;RPPR=5.18177;RPR=8628,1282;RUN=1,1;SAF=0,0;SAP=18738.5,2786.84;SAR=8628,1282;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53,0:0:0:53,0:1871,0:-168.604,-15.9546,0,-168.604,-15.9546,-168.604	1/1:150:0,148,0:0:0:148,0:5220,0:-469.224,-44.5524,0,-469.224,-44.5524,-469.224	1/1:169:0,169,0:0:0:169,0:5969,0:-536.68,-50.8741,0,-536.68,-50.8741,-536.68	1/1:246:0,246,0:0:0:246,0:8623,0:-775.374,-74.0534,0,-775.374,-74.0534,-775.374	1/2:83:0,45,38:0:0:45,38:1581,1353:-239.308,-110.629,-97.0829,-129.033,0,-117.594	1/2:68:0,27,41:0:0:27,41:957,1472:-197.65,-120.006,-111.878,-77.9997,0,-65.6574	1/1:182:0,182,0:0:0:182,0:6426,0:-578.383,-54.7875,0,-578.383,-54.7875,-578.383	1/1:184:0,184,0:0:0:184,0:6489,0:-583.807,-55.3895,0,-583.807,-55.3895,-583.807	1/1:92:0,92,0:0:0:92,0:3218,0:-289.699,-27.6948,0,-289.699,-27.6948,-289.699	1/1:108:0,108,0:0:0:108,0:3833,0:-345.113,-32.5112,0,-345.113,-32.5112,-345.113	1/1:52:0,51,0:0:0:51,0:1814,0:-163.238,-15.3525,0,-163.238,-15.3525,-163.238	1/1:70:0,70,0:0:0:70,0:2487,0:-224.013,-21.0721,0,-224.013,-21.0721,-224.013	1/1:68:0,68,0:0:0:68,0:2419,0:-217.678,-20.47,0,-217.678,-20.47,-217.678	1/2:59:0,23,36:0:0:23,36:814,1268:-169.847,-103.583,-96.6592,-66.6169,0,-55.7798	1/2:40:0,21,19:0:0:21,19:752,671:-116.326,-54.9962,-48.6746,-61.685,0,-55.9654	1/2:54:0,29,25:0:0:29,25:1027,891:-156.596,-72.983,-64.2532,-83.9681,0,-76.4424	1/1:60:0,59,0:0:0:59,0:2106,0:-189.314,-17.7608,0,-189.314,-17.7608,-189.314	1/2:37:0,19,18:0:0:19,18:670,644:-107.276,-52.8721,-47.1525,-54.7585,0,-49.3399	1/1:26:0,26,0:0:0:26,0:923,0:-83.3235,-7.82678,0,-83.3235,-7.82678,-83.3235	1/2:228:0,94,134:0:0:94,134:3330,4762:-659.471,-388.399,-360.102,-271.427,0,-231.089	1/2:149:0,67,81:0:0:67,81:2339,2884:-424.133,-235.055,-214.886,-189.071,0,-164.688	1/1:145:0,144,0:0:0:144,0:5109,0:-459.485,-43.3483,0,-459.485,-43.3483,-459.485	1/1:127:0,127,0:0:0:127,0:4428,0:-398.597,-38.2308,0,-398.597,-38.2308,-398.597	1/2:137:0,78,59:0:0:78,59:2725,2120:-394.855,-173.308,-149.827,-221.902,0,-204.142	1/1:98:0,98,0:0:0:98,0:3453,0:-310.922,-29.5009,0,-310.922,-29.5009,-310.922	1/1:363:0,362,0:0:0:362,0:12717,0:-1143.44,-108.973,0,-1143.44,-108.973,-1143.44	1/1:197:0,197,0:0:0:197,0:6983,0:-628.458,-59.3029,0,-628.458,-59.3029,-628.458	1/1:34:0,34,0:0:0:34,0:1202,0:-108.468,-10.235,0,-108.468,-10.235,-108.468	1/1:322:0,322,0:0:0:322,0:11364,0:-1022.33,-96.9317,0,-1022.33,-96.9317,-1022.33	1/1:148:0,148,0:0:0:148,0:5210,0:-468.275,-44.5524,0,-468.275,-44.5524,-468.275	1/2:140:0,56,84:0:0:56,84:1994,2961:-403.929,-241.434,-224.576,-162.849,0,-137.563	1/1:10:0,10,0:0:0:10,0:350,0:-31.8366,-3.0103,0,-31.8366,-3.0103,-31.8366	1/1:25:0,25,0:0:0:25,0:886,0:-79.9916,-7.52575,0,-79.9916,-7.52575,-79.9916	1/1:8:0,8,0:0:0:8,0:276,0:-25.109,-2.40824,0,-25.109,-2.40824,-25.109	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/1:190:0,190,0:0:0:190,0:6703,0:-602.956,-57.1957,0,-602.956,-57.1957,-602.956	1/1:231:0,231,0:0:0:231,0:8111,0:-728.534,-69.5379,0,-728.534,-69.5379,-728.534	1/2:58:0,26,31:0:0:26,31:912,1112:-164.885,-90.6996,-82.8728,-74.1799,0,-64.8479	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:180:0,177,0:0:0:177,0:6202,0:-557.608,-53.2823,0,-557.608,-53.2823,-557.608	1/1:30:0,30,0:0:0:30,0:1065,0:-96.1162,-9.0309,0,-96.1162,-9.0309,-96.1162	1/1:165:0,165,0:0:0:165,0:5869,0:-528.12,-49.67,0,-528.12,-49.67,-528.12	1/1:55:0,55,0:0:0:55,0:1931,0:-174.005,-16.5567,0,-174.005,-16.5567,-174.005	1/2:63:0,35,28:0:0:35,28:1224,985:-180.085,-80.5327,-69.9966,-99.9032,0,-91.4744	1/1:107:0,107,0:0:0:107,0:3788,0:-341.088,-32.2102,0,-341.088,-32.2102,-341.088	1/2:151:0,84,67:0:0:84,67:2955,2361:-432.932,-192.578,-167.291,-240.706,0,-220.537	1/1:165:0,164,1:0:0:164,1:5817,36:-523.146,-49.3689,0,-520.209,-46.0717,-519.908	1/1:105:0,105,0:0:0:105,0:3694,0:-332.607,-31.6082,0,-332.607,-31.6082,-332.607	1/1:182:0,182,0:0:0:182,0:6397,0:-575.708,-54.7875,0,-575.708,-54.7875,-575.708	1/1:287:0,285,0:0:0:285,0:10052,0:-903.714,-85.7936,0,-903.714,-85.7936,-903.714	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:227:0,227,0:0:0:227,0:8023,0:-721.22,-68.3338,0,-721.22,-68.3338,-721.22	1/1:32:0,31,0:0:0:31,0:1088,0:-97.8543,-9.33193,0,-97.8543,-9.33193,-97.8543	1/2:10:0,9,1:0:0:9,1:320,36:-29.3711,-3.29724,-0.587975,-26.4332,0,-26.1322	1/2:158:1,70,87:1:36:70,87:2481,3106:-451.931,-250.174,-232.04,-199.116,0,-175.864	1/1:89:0,89,0:0:0:89,0:3133,0:-282.126,-26.7917,0,-282.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chr02	12314208	.	C	T	10881.8	PASS	AB=0.385694;ABP=237.82;AC=31;AF=0.164894;AN=188;AO=809;CIGAR=1X;DP=10086;DPB=10086;DPRA=0.66686;EPP=1759.73;EPPR=20126;GTI=3;LEN=1;MEANALT=1.05405;MQM=59.885;MQMR=59.956;NS=94;NUMALT=1;ODDS=0.0869974;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28917;QR=324610;RO=9267;RPL=809;RPP=1759.73;RPPR=20126;RPR=0;RUN=1;SAF=809;SAP=1759.73;SAR=0;SRF=9267;SRP=20126;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:93:93,0:93:3209:0:0:0,-27.9958,-289.033	0/0:124:124,0:124:4333:0:0:0,-37.3277,-390.15	0/0:166:166,0:166:5813:0:0:0,-49.971,-523.292	0/0:356:356,0:356:12452:0:0:0,-107.167,-1120.54	0/1:50:43,7:43:1509:7:252:-7.97746,0,-121.05	0/1:54:40,14:40:1389:14:504:-29.4409,0,-109.047	0/0:95:95,0:95:3355:0:0:0,-28.5978,-302.167	0/0:147:146,0:146:5145:0:0:0,-43.9504,-462.707	0/0:148:148,0:148:5192:0:0:0,-44.5524,-467.424	0/0:98:98,0:98:3448:0:0:0,-29.5009,-310.447	0/0:21:21,0:21:722:0:0:0,-6.32163,-65.2975	0/0:64:64,0:64:2210:0:0:0,-19.2659,-199.164	0/0:53:53,0:53:1865:0:0:0,-15.9546,-168.127	0/1:30:18,12:18:632:12:432:-30.1841,0,-48.1759	0/1:42:25,17:25:848:17:612:-42.7702,0,-63.9864	0/1:35:22,13:22:763:13:464:-31.5615,0,-58.4525	0/0:19:19,0:19:628:0:0:0,-5.71957,-56.831	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:178:112,66:112:3970:66:2349:-158.084,0,-303.91	0/1:111:69,42:69:2407:42:1504:-102.234,0,-183.472	0/0:234:233,0:233:8235:0:0:0,-70.14,-740.811	0/0:142:142,0:142:5004:0:0:0,-42.7463,-450.267	0/1:73:47,26:47:1647:26:927:-61.7722,0,-126.539	0/0:110:110,0:110:3864:0:0:0,-33.1133,-347.96	0/0:343:342,0:342:11982:0:0:0,-102.952,-1077.98	0/0:247:247,0:247:8574:0:0:0,-74.3544,-771.678	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/0:361:361,0:361:12649:0:0:0,-108.672,-1137.99	0/0:190:189,0:189:6607:0:0:0,-56.8947,-594.36	0/1:184:121,63:121:4291:63:2259:-148.153,0,-330.979	0/0:14:14,0:14:487:0:0:0,-4.21442,-44.1592	0/0:23:23,0:23:808:0:0:0,-6.92369,-73.0401	0/0:17:17,0:17:584:0:0:0,-5.11751,-52.8808	0/1:17:11,6:11:372:6:216:-14.673,0,-28.6863	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/0:129:129,0:129:4429:0:0:0,-38.8329,-398.792	0/0:175:174,1:174:6027:1:36:0,-49.082,-538.951	0/1:17:10,7:10:345:7:252:-17.9099,0,-26.2633	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:215:215,0:215:7435:0:0:0,-64.7214,-669.221	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/0:264:263,0:263:9255:0:0:0,-79.1709,-832.657	0/0:47:47,0:47:1647:0:0:0,-14.1484,-148.517	0/1:32:22,10:22:752:10:360:-23.1113,0,-58.3612	0/0:192:192,0:192:6776:0:0:0,-57.7978,-609.921	0/1:119:86,33:86:2981:33:1176:-70.2872,0,-232.7	0/0:301:300,0:300:10525:0:0:0,-90.309,-946.971	0/0:148:148,0:148:5247:0:0:0,-44.5524,-472.368	0/0:116:116,0:116:4058:0:0:0,-34.9195,-365.407	0/0:269:268,0:268:9404:0:0:0,-80.676,-845.982	0/1:18:9,9:9:315:9:324:-24.0873,0,-23.2687	0/0:152:152,0:152:5369:0:0:0,-45.7566,-483.346	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/1:24:12,12:12:407:12:432:-31.9965,0,-29.7308	0/1:148:85,63:85:2945:63:2247:-157.94,0,-220.731	0/0:107:107,0:107:3747:0:0:0,-32.2102,-337.435	0/1:18:3,15:3:104:15:540:-43.518,0,-4.28427	0/1:37:21,16:21:731:16:572:-40.6181,0,-54.9723	0/0:129:129,0:129:4509:0:0:0,-38.8329,-405.979	0/1:70:42,27:42:1481:27:972:-66.6386,0,-112.452	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:238:238,0:238:8392:0:0:0,-71.6451,-755.235	0/1:164:108,56:108:3823:56:2003:-131.174,0,-294.902	0/0:68:65,3:65:2303:3:87:0,-12.3527,-199.414	0/0:144:144,0:144:5042:0:0:0,-43.3483,-453.921	0/1:286:168,116:168:5864:116:4159:-288.692,0,-442.077	0/0:151:150,1:150:5234:1:36:0,-41.8573,-467.606	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:62:61,1:61:2128:1:36:0,-15.0656,-188.187	0/1:38:22,16:22:771:16:568:-40.0127,0,-58.2712	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/0:229:229,0:229:7977:0:0:0,-68.9359,-717.956	0/1:72:42,30:42:1483:30:1068:-74.7579,0,-112.09	0/0:278:278,0:278:9762:0:0:0,-83.6863,-878.539	0/0:158:158,0:158:5555:0:0:0,-47.5627,-500.081	0/0:135:134,1:134:4710:1:36:0,-37.0408,-420.465	0/0:92:91,1:91:3185:1:32:0,-24.4954,-283.672	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:144:144,0:144:5059:0:0:0,-43.3483,-455.091	0/1:85:51,34:51:1786:34:1211:-83.708,0,-135.434	0/0:293:292,1:292:10277:1:36:0,-84.6035,-920.78	0/0:75:75,0:75:2592:0:0:0,-22.5772,-233.529	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8446	0/1:25:9,16:9:301:16:572:-44.2873,0,-19.888	0/0:83:83,0:83:2879:0:0:0,-24.9855,-259.122	0/1:21:12,9:12:412:9:324:-23.1842,0,-31.0876	0/0:45:45,0:45:1554:0:0:0,-13.5463,-140.149	0/0:45:45,0:45:1596:0:0:0,-13.5463,-143.93	0/0:18:18,0:18:621:0:0:0,-5.41854,-56.2103	0/1:39:18,21:18:648:21:747:-55.8141,0,-46.9117	0/1:59:26,33:26:888:33:1180:-88.7473,0,-62.4687	0/0:163:163,0:163:5722:0:0:0,-49.0679,-515.104	0/0:74:74,0:74:2603:0:0:0,-22.2762,-234.52
chr02	12464326	.	T	C	14043.8	PASS	AB=0.51504;ABP=6.21086;AC=31;AF=0.164894;AN=188;AO=852;CIGAR=1X;DP=6358;DPB=6358;DPRA=0.879393;EPP=1853.1;EPPR=11952.6;GTI=2;LEN=1;MEANALT=1.05556;MQM=57.9131;MQMR=59.9208;NS=94;NUMALT=1;ODDS=1.20267;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30429;QR=196781;RO=5503;RPL=852;RPP=1853.1;RPPR=11952.6;RPR=0;RUN=1;SAF=0;SAP=1853.1;SAR=852;SRF=0;SRP=11952.6;SRR=5503;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:150:150,0:150:5388:0:0:0,-45.1545,-485.049	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.113	0/0:150:150,0:150:5380:0:0:0,-45.1545,-484.299	0/1:57:30,27:30:1080:27:972:-70.5948,0,-80.3545	0/1:84:45,39:45:1616:39:1396:-100.331,0,-120.443	0/0:78:78,0:78:2777:0:0:0,-23.4803,-250.17	0/0:127:126,1:126:4516:1:36:0,-34.6325,-403.005	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.729	0/1:35:19,16:19:684:16:576:-41.5882,0,-51.3543	0/1:41:26,15:26:936:15:536:-36.2195,0,-72.2172	0/1:21:9,12:9:324:12:432:-32.8586,0,-23.1842	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:20:12,8:12:432:8:288:-20.1744,0,-33.2006	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:135:59,76:59:2120:76:2724:-204.61,0,-150.429	0/1:105:55,50:55:1968:50:1788:-129.497,0,-145.787	0/0:113:113,0:113:4041:0:0:0,-34.0164,-362.339	0/0:62:61,0:61:2165:0:0:0,-18.3628,-194.756	0/1:103:45,58:45:1612:58:2084:-156.681,0,-114.364	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:256:256,0:256:9147:0:0:0,-77.0637,-822.866	0/0:109:109,0:109:3897:0:0:0,-32.8123,-350.866	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:184:184,0:184:6539:0:0:0,-55.3895,-588.099	0/0:211:211,0:211:7534:0:0:0,-63.5173,-678.089	0/1:123:67,55:67:2385:55:1949:-138.334,0,-177.821	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:3:0,3:0:0:3:104:-9.68763,-0.90309,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.314	0/0:129:129,0:129:4636:0:0:0,-38.8329,-417.3	0/1:15:4,11:4:144:11:392:-31.1037,0,-8.79817	0/1:4:1,3:1:36:3:108:-8.8698,0,-2.39415	0/0:126:126,0:126:4482:0:0:0,-37.9298,-403.359	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:111:111,0:111:3965:0:0:0,-33.4143,-357.039	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:22:10,12:10:360:12:432:-32.5881,0,-26.1216	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.637	0/1:119:67,52:67:2385:52:1837:-129.66,0,-179.083	0/0:164:162,2:162:5755:2:57:0,-43.9566,-512.567	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.51	0/1:4:2,2:2:72:2:72:-5.63069,0,-5.6326	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/1:65:31,34:31:1100:34:1216:-90.14,0,-79.7433	0/0:38:36,2:36:1288:2:72:0,-4.60433,-109.389	0/1:7:5,2:5:180:2:72:-4.7276,0,-14.4449	0/1:6:3,3:3:93:3:108:-8.26617,0,-6.87055	0/0:57:55,2:55:1934:2:72:0,-10.3224,-167.497	0/1:79:34,45:34:1216:45:1620:-122.225,0,-85.9652	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:174:173,1:173:6159:1:36:0,-48.7819,-550.81	0/1:140:61,79:61:2180:79:2805:-209.39,0,-154.275	0/0:53:50,2:50:1784:2:72:0,-9.10153,-154.042	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.231	0/1:162:73,89:73:2612:89:3187:-238.121,0,-186.56	0/0:98:98,0:98:3505:0:0:0,-29.5009,-315.659	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.194	0/1:43:23,20:23:828:20:720:-52.1717,0,-61.8998	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.839	0/1:8:3,5:3:108:5:180:-14.1073,0,-7.66693	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.682	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.575	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.451	0/0:89:89,0:89:3173:0:0:0,-26.7917,-285.765	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:103:103,0:103:3659:0:0:0,-31.0061,-329.511	0/1:73:30,43:30:1080:43:1522:-115.24,0,-75.5381	0/0:129:129,0:129:4620:0:0:0,-38.8329,-415.963	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.323	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:49:19,30:19:684:30:1068:-81.6569,0,-47.1399	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.253	0/1:28:19,9:19:680:9:324:-21.0409,0,-53.1003	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:37:37,0:37:1332:0:0:0,-11.1381,-119.992	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:40:23,17:23:824:17:604:-42.6434,0,-62.4421	0/1:28:7,21:7:248:21:752:-59.5369,0,-14.2354	0/0:94:94,0:94:3345:0:0:0,-28.2968,-301.267	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161
chr02	12828706	.	TG	CA,CG	148123	PASS	AB=0.502444,0.494624;ABP=3.11643,3.52398;AC=156,28;AF=0.847826,0.152174;AN=184;AO=6254,1020;CIGAR=2X,1X1M;DP=7286;DPB=7288;DPRA=0,0.898858;EPP=13583.4,2217.91;EPPR=7.35324;GTI=0;LEN=2,1;MEANALT=1.44565,2.09375;MQM=38.1874,52.4461;MQMR=60;NS=92;NUMALT=2;ODDS=1.54131;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=144,0;PQR=0;PRO=0;QA=223037,36452;QR=64;RO=2;RPL=0,0;RPP=13583.4,2217.91;RPPR=7.35324;RPR=6254,1020;RUN=1,1;SAF=6254,1020;SAP=13583.4,2217.91;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18,0:0:0:18,0:642,0:-53.4715,-5.41854,0,-53.4715,-5.41854,-53.4715	1/1:103:0,103,0:0:0:103,0:3668,0:-301.117,-31.0061,0,-301.117,-31.0061,-301.117	1/1:132:0,132,0:0:0:132,0:4721,0:-387.018,-39.736,0,-387.018,-39.736,-387.018	1/1:141:0,140,0:0:0:140,0:4994,0:-427.028,-42.1442,0,-427.028,-42.1442,-427.028	1/2:50:0,28,22:0:0:28,22:997,788:-139.594,-64.4821,-56.0533,-75.458,0,-68.8354	1/2:71:0,41,30:0:0:41,30:1461,1079:-194.424,-87.6006,-75.2584,-107.166,0,-98.135	1/1:132:0,132,0:0:0:132,0:4721,0:-403.306,-39.736,0,-403.306,-39.736,-403.306	1/1:163:0,163,0:0:0:163,0:5827,0:-472.907,-49.0679,0,-472.907,-49.0679,-472.907	1/1:115:0,114,0:0:0:114,0:4077,0:-332.454,-34.3174,0,-332.454,-34.3174,-332.454	1/1:41:0,41,0:0:0:41,0:1474,0:-126.927,-12.3422,0,-126.927,-12.3422,-126.927	1/1:37:0,37,0:0:0:37,0:1319,0:-111.655,-11.1381,0,-111.655,-11.1381,-111.655	1/1:88:0,88,0:0:0:88,0:3149,0:-256.957,-26.4906,0,-256.957,-26.4906,-256.957	1/1:75:0,75,0:0:0:75,0:2674,0:-218.828,-22.5773,0,-218.828,-22.5773,-218.828	1/2:52:0,24,28:0:0:24,28:852,996:-144.698,-80.933,-73.7083,-64.1048,0,-55.676	1/2:71:0,43,28:0:0:43,28:1544,1004:-195.759,-81.816,-68.8717,-114.289,0,-105.86	1/2:53:1,26,26:1:36:26,26:934,936:-142.586,-73.1005,-68.2112,-66.8341,0,-61.9458	1/1:65:0,65,0:0:0:65,0:2321,0:-188.028,-19.567,0,-188.028,-19.567,-188.028	1/2:59:0,34,25:0:0:34,25:1187,896:-159.218,-72.9572,-62.7222,-86.6001,0,-79.0743	1/1:38:0,37,0:0:0:37,0:1328,0:-105.945,-11.1381,0,-105.945,-11.1381,-105.945	1/2:79:0,42,37:0:0:42,37:1506,1314:-223.64,-106.925,-94.2819,-117.063,0,-105.925	1/2:133:0,59,74:0:0:59,74:2109,2645:-374.76,-214.221,-196.46,-160.883,0,-138.607	1/1:70:0,70,0:0:0:70,0:2503,0:-218.036,-21.0721,0,-218.036,-21.0721,-218.036	1/1:59:0,59,0:0:0:59,0:2066,0:-178.527,-17.7608,0,-178.527,-17.7608,-178.527	1/2:78:1,61,16:1:28:61,16:2180,576:-209.867,-44.756,-28.6072,-163.267,0,-160.669	1/1:83:0,83,0:0:0:83,0:2938,0:-249.471,-24.9855,0,-249.471,-24.9855,-249.471	1/1:284:0,283,0:0:0:283,0:10080,0:-879.097,-85.1915,0,-879.097,-85.1915,-879.097	1/1:214:0,214,0:0:0:214,0:7647,0:-638.024,-64.4204,0,-638.024,-64.4204,-638.024	1/1:42:0,42,0:0:0:42,0:1493,0:-126.208,-12.6433,0,-126.208,-12.6433,-126.208	1/1:173:0,173,0:0:0:173,0:6200,0:-538.176,-52.0782,0,-538.176,-52.0782,-538.176	1/1:62:0,62,0:0:0:62,0:2228,0:-184.292,-18.6639,0,-184.292,-18.6639,-184.292	1/2:142:0,67,75:0:0:67,75:2393,2687:-401.964,-218.84,-198.671,-183.471,0,-160.894	1/1:1:0,1,0:0:0:1,0:34,0:-3.25451,-0.30103,0,-3.25451,-0.30103,-3.25451	1/1:8:0,8,0:0:0:8,0:288,0:-21.6399,-2.40824,0,-21.6399,-2.40824,-21.6399	1/1:4:0,4,0:0:0:4,0:144,0:-12.2064,-1.20412,0,-12.2064,-1.20412,-12.2064	.:.:.:.:.:.:.:.	1/1:2:0,2,0:0:0:2,0:72,0:-6.26815,-0.60206,0,-6.26815,-0.60206,-6.26815	1/1:220:0,219,0:0:0:219,0:7850,0:-675.193,-65.9256,0,-675.193,-65.9256,-675.193	1/1:58:0,58,0:0:0:58,0:2068,0:-173.203,-17.4597,0,-173.203,-17.4597,-173.203	1/2:61:0,32,29:0:0:32,29:1135,1040:-167.082,-84.6319,-74.9989,-82.7896,0,-74.0597	1/2:5:0,1,3:0:0:1,3:36,96:-10.1652,-7.41403,-7.113,-2.73762,0,-1.83453	1/1:98:0,98,0:0:0:98,0:3472,0:-291.367,-29.5009,0,-291.367,-29.5009,-291.367	1/1:33:0,33,0:0:0:33,0:1188,0:-98.1554,-9.93399,0,-98.1554,-9.93399,-98.1554	1/1:99:0,99,0:0:0:99,0:3492,0:-292.974,-29.802,0,-292.974,-29.802,-292.974	1/1:97:0,96,1:0:0:96,1:3426,36:-292.133,-28.8989,0,-289.265,-26.031,-288.964	1/2:67:0,31,36:0:0:31,36:1114,1296:-192.299,-105.916,-96.5844,-86.7332,0,-75.8961	1/1:117:0,117,0:0:0:117,0:4141,0:-360.679,-35.2205,0,-360.679,-35.2205,-360.679	1/2:71:0,30,41:0:0:30,41:1067,1468:-196.558,-119.21,-110.179,-77.6828,0,-65.3406	1/1:86:0,86,0:0:0:86,0:3068,0:-263.992,-25.8886,0,-263.992,-25.8886,-263.992	1/1:77:0,77,0:0:0:77,0:2747,0:-236.069,-23.1793,0,-236.069,-23.1793,-236.069	1/1:81:0,81,0:0:0:81,0:2899,0:-248.162,-24.3834,0,-248.162,-24.3834,-248.162	1/1:77:0,77,0:0:0:77,0:2751,0:-236.874,-23.1793,0,-236.874,-23.1793,-236.874	.:.:.:.:.:.:.:.	1/1:62:0,62,0:0:0:62,0:2216,0:-181.837,-18.6639,0,-181.837,-18.6639,-181.837	1/1:18:0,18,0:0:0:18,0:646,0:-56.0407,-5.41854,0,-56.0407,-5.41854,-56.0407	1/2:10:0,7,3:0:0:7,3:248,108:-26.8386,-9.13906,-7.03185,-18.045,0,-17.1419	1/2:115:0,55,58:0:0:55,58:1957,2073:-314.86,-167.871,-151.314,-146.973,0,-129.513	1/1:32:0,32,0:0:0:32,0:1142,0:-98.434,-9.63296,0,-98.434,-9.63296,-98.434	1/2:6:0,4,2:0:0:4,2:142,72:-16.4874,-6.23208,-5.02796,-10.6014,0,-9.99936	1/2:13:0,6,7:0:0:6,7:216,248:-37.6537,-20.547,-18.7408,-17.4587,0,-15.3515	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chr02	12828720	.	A	C	124809	PASS	AB=0.490557;ABP=4.65069;AC=154;AF=0.836957;AN=184;AO=6254;CIGAR=1X;DP=7370;DPB=7370;DPRA=0;EPP=13583.4;EPPR=2415.52;GTI=2;LEN=1;MEANALT=1.04348;MQM=38.2928;MQMR=51.1341;NS=92;NUMALT=1;ODDS=6.09406;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223147;QR=39715;RO=1111;RPL=0;RPP=13583.4;RPPR=2415.52;RPR=6254;RUN=1;SAF=6254;SAP=13583.4;SAR=0;SRF=1111;SRP=2415.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:622:-52.1533,-5.41854,0	1/1:107:0,107:0:0:107:3810:-312.117,-32.2102,0	1/1:137:0,137:0:0:137:4900:-402.13,-41.2411,0	1/1:144:2,142:2:72:142:5083:-427.676,-36.5213,0	0/1:51:23,28:23:828:28:1008:-69.4703,0,-57.7156	0/1:74:33,41:33:1188:41:1454:-96.9296,0,-84.0266	1/1:135:0,135:0:0:135:4832:-410.779,-40.6391,0	1/1:165:0,165:0:0:165:5867:-479.134,-49.67,0	1/1:115:0,115:0:0:115:4103:-335.353,-34.6185,0	1/1:41:0,41:0:0:41:1464:-126.185,-12.3422,0	1/1:38:0,38:0:0:38:1359:-115.155,-11.4391,0	1/1:89:0,89:0:0:89:3162:-258.251,-26.7917,0	1/1:79:0,79:0:0:79:2824:-231.746,-23.7814,0	0/1:51:28,23:28:996:23:820:-53.9052,0,-73.201	0/1:72:35,37:35:1256:37:1328:-93.3581,0,-83.9933	0/1:54:29,25:29:1044:25:888:-59.5316,0,-75.963	1/1:68:0,68:0:0:68:2432:-197.152,-20.47,0	0/1:62:27,35:27:968:35:1260:-83.6332,0,-68.2896	1/1:43:0,43:0:0:43:1540:-124.349,-12.9443,0	0/1:83:38,45:38:1364:45:1593:-112.501,0,-96.9039	0/1:137:76,61:76:2698:61:2170:-141.781,0,-199.066	1/1:70:0,70:0:0:70:2504:-217.155,-21.0721,0	1/1:61:0,61:0:0:61:2160:-185.979,-18.3628,0	0/1:77:17,60:17:612:60:2136:-157.181,0,-32.1303	1/1:82:0,82:0:0:82:2915:-246.309,-24.6845,0	1/1:286:0,285:0:0:285:10179:-887.049,-85.7936,0	1/1:215:0,215:0:0:215:7689:-642.191,-64.7215,0	1/1:42:0,42:0:0:42:1504:-127.048,-12.6433,0	1/1:176:1,175:1:36:175:6233:-539.988,-50.8947,0	1/1:61:1,60:1:36:60:2144:-177.732,-16.8662,0	0/1:144:77,67:77:2738:67:2392:-160.422,0,-201.842	1/1:1:0,1:0:0:1:32:-3.10273,-0.30103,0	0/1:8:2,6:2:72:6:216:-16.2236,0,-0.811641	1/1:4:0,4:0:0:4:144:-11.912,-1.20412,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.26815,-0.60206,0	1/1:223:3,220:3:108:220:7837:-671.632,-59.8788,0	1/1:57:0,57:0:0:57:2024:-169.365,-17.1587,0	0/1:61:33,28:33:1188:28:992:-63.3888,0,-85.5181	0/1:5:4,1:4:140:1:36:-1.88245,0,-10.2913	1/1:96:0,96:0:0:96:3427:-287.683,-28.8989,0	1/1:33:2,31:2:72:31:1103:-89.5533,-5.89328,0	1/1:101:0,101:0:0:101:3588:-301.27,-30.404,0	1/1:100:1,99:1:36:99:3506:-297.356,-26.5098,0	0/1:68:36,32:36:1296:32:1140:-76.9908,0,-96.2851	1/1:116:0,115:0:0:115:4103:-356.013,-34.6185,0	0/1:72:42,30:42:1508:30:1076:-65.9209,0,-113.316	1/1:87:0,87:0:0:87:3100:-267.029,-26.1896,0	1/1:78:0,78:0:0:78:2792:-240.184,-23.4803,0	1/1:82:0,82:0:0:82:2918:-251.059,-24.6845,0	1/1:77:1,76:1:36:76:2720:-233.912,-21.2878,0	.:.:.:.:.:.:.:.	1/1:64:0,64:0:0:64:2277:-187.211,-19.2659,0	1/1:18:0,18:0:0:18:648:-56.1012,-5.41854,0	0/1:10:4,6:4:144:6:212:-14.9102,0,-9.1377	0/1:118:63,55:63:2245:55:1955:-128.296,0,-164.437	1/1:34:0,34:0:0:34:1224:-104.98,-10.235,0	0/1:6:4,2:4:144:2:72:-4.84895,0,-10.2182	0/1:13:7,6:7:252:6:216:-15.3515,0,-19.1046	1/1:62:0,62:0:0:62:2181:-184.431,-18.6639,0	0/1:99:54,44:54:1936:44:1571:-101.126,0,-140.167	1/1:5:0,5:0:0:5:174:-14.753,-1.50515,0	1/1:68:0,68:0:0:68:2432:-211.868,-20.47,0	0/1:202:93,109:93:3291:109:3876:-272.635,0,-232.728	1/1:47:4,43:4:144:43:1544:-115.914,-0.860148,0	1/1:44:0,44:0:0:44:1580:-134.267,-13.2453,0	0/1:103:51,52:51:1813:52:1852:-128.739,0,-131.922	1/1:68:0,68:0:0:68:2427:-207.986,-20.47,0	1/1:19:0,19:0:0:19:680:-58.113,-5.71957,0	1/1:92:0,92:0:0:92:3292:-270.072,-27.6948,0	0/1:108:67,41:67:2408:41:1468:-94.931,0,-166.55	1/1:15:0,15:0:0:15:540:-46.3129,-4.51545,0	1/1:84:1,81:1:36:81:2895:-230.744,-21.4484,0	0/1:91:51,40:51:1824:40:1419:-90.3516,0,-136.351	1/1:160:0,160:0:0:160:5703:-480.727,-48.1648,0	1/1:106:1,105:1:32:105:3747:-319.053,-30.0302,0	1/1:71:0,71:0:0:71:2541:-208.614,-21.3731,0	1/1:101:2,99:2:72:99:3541:-282.721,-23.5897,0	1/1:9:0,9:0:0:9:319:-26.0597,-2.70927,0	1/1:75:1,74:1:36:74:2636:-217.149,-18.9858,0	0/1:79:49,30:49:1760:30:1072:-64.3681,0,-134.159	1/1:201:0,201:0:0:201:7187:-617.015,-60.507,0	1/1:108:7,101:7:252:101:3620:-294.18,-15.4774,0	1/1:66:3,63:3:108:63:2256:-186.019,-12.3741,0	0/1:75:37,38:37:1328:38:1360:-93.5651,0,-97.0038	1/1:152:1,151:1:36:151:5387:-459.585,-43.0204,0	0/1:35:16,19:16:542:19:676:-44.4059,0,-38.2535	1/1:73:1,72:1:36:72:2572:-207.159,-18.6762,0	1/1:77:0,77:0:0:77:2760:-226.43,-23.1793,0	0/1:31:4,27:4:144:27:968:-72.2516,0,-0.0769862	0/1:67:39,28:39:1400:28:999:-64.4657,0,-105.809	0/1:62:39,23:39:1404:23:808:-50.7739,0,-107.738	1/1:77:0,77:0:0:77:2748:-235.257,-23.1793,0	1/1:127:1,126:1:36:126:4511:-383.735,-36.3393,0
chr02	12834964	.	G	A	76205.8	PASS	AB=0.471377;ABP=18.9215;AC=159;AF=0.845745;AN=188;AO=7570;CIGAR=1X;DP=8758;DPB=8758;DPRA=0;EPP=16441.1;EPPR=2580.55;GTI=2;LEN=1;MEANALT=1.01064;MQM=22.5338;MQMR=36.8517;NS=94;NUMALT=1;ODDS=0.076514;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=269619;QR=42157;RO=1187;RPL=7570;RPP=16441.1;RPPR=2580.55;RPR=0;RUN=1;SAF=7570;SAP=16441.1;SAR=0;SRF=1187;SRP=2580.55;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1644:-78.9057,-13.8474,0	1/1:124:0,124:0:0:124:4421:-210.571,-37.3277,0	1/1:274:0,274:0:0:274:9779:-466.724,-82.4822,0	1/1:186:0,185:0:0:185:6539:-387.538,-55.6906,0	0/1:69:39,30:39:1387:30:1063:-37.0844,0,-94.721	0/1:45:27,18:27:956:18:636:-17.3401,0,-63.148	1/1:82:0,82:0:0:82:2928:-173.125,-24.6845,0	1/1:123:0,123:0:0:123:4366:-209.558,-37.0267,0	1/1:65:0,65:0:0:65:2327:-111.224,-19.567,0	1/1:97:0,97:0:0:97:3471:-206.259,-29.1999,0	1/1:46:0,46:0:0:46:1644:-97.9019,-13.8474,0	1/1:61:0,61:0:0:61:2175:-104.649,-18.3628,0	1/1:43:0,43:0:0:43:1540:-73.4569,-12.9443,0	0/1:62:31,31:31:1108:31:1108:-42.1571,0,-71.134	0/1:54:26,28:26:928:28:1004:-42.9142,0,-62.7885	0/1:37:16,21:16:572:21:748:-29.4095,0,-37.1405	1/1:51:0,51:0:0:51:1820:-87.4916,-15.3525,0	0/1:25:12,13:12:432:13:468:-14.883,0,-27.2194	1/1:18:0,18:0:0:18:640:-31.0721,-5.41854,0	0/1:226:134,92:134:4792:92:3282:-126.573,0,-336.646	0/1:168:91,77:91:3235:77:2736:-98.9911,0,-216.491	1/1:137:0,137:0:0:137:4894:-312.246,-41.2411,0	1/1:81:0,81:0:0:81:2885:-169.993,-24.3834,0	0/1:124:58,66:58:2084:66:2350:-90.3405,0,-133.897	1/1:90:0,90:0:0:90:3217:-173.651,-27.0927,0	1/1:325:0,325:0:0:325:11560:-731.529,-97.8348,0	1/1:235:0,235:0:0:235:8374:-455.301,-70.7421,0	1/1:22:0,22:0:0:22:777:-43.1412,-6.62266,0	1/1:300:0,300:0:0:300:10705:-682.881,-90.309,0	1/1:150:0,150:0:0:150:5331:-291.536,-45.1545,0	0/1:85:41,44:41:1445:44:1563:-68.2194,0,-97.6818	1/1:4:0,4:0:0:4:144:-8.07766,-1.20412,0	1/1:27:0,27:0:0:27:971:-52.3895,-8.12781,0	1/1:3:0,3:0:0:3:108:-5.29628,-0.90309,0	1/1:2:0,2:0:0:2:72:-3.5939,-0.60206,0	1/1:3:0,3:0:0:3:108:-5.29628,-0.90309,0	1/1:127:0,127:0:0:127:4543:-289.39,-38.2308,0	1/1:201:0,201:0:0:201:7178:-391.78,-60.507,0	0/1:43:23,20:23:815:20:720:-20.5749,0,-52.6652	0/1:7:5,2:5:171:2:59:-1.76933,0,-12.6526	1/1:148:0,148:0:0:148:5241:-286.27,-44.5524,0	1/1:29:0,29:0:0:29:1040:-56.8867,-8.72987,0	1/1:164:0,164:0:0:164:5856:-319.207,-49.3689,0	1/1:45:0,45:0:0:45:1603:-95.4702,-13.5464,0	0/1:51:24,27:24:843:27:966:-42.088,0,-56.019	1/1:93:0,93:0:0:93:3323:-210.874,-27.9958,0	0/1:115:51,64:51:1803:64:2276:-74.6792,0,-109.63	1/1:198:0,198:0:0:198:7072:-418.924,-59.6039,0	1/1:90:0,90:0:0:90:3175:-188.691,-27.0927,0	1/1:100:0,100:0:0:100:3549:-211.558,-30.103,0	1/1:174:0,174:0:0:174:6187:-394.451,-52.3792,0	0/1:13:3,10:3:108:10:356:-17.3023,0,-5.67269	1/1:184:0,184:0:0:184:6576:-313.619,-55.3895,0	1/1:25:0,25:0:0:25:883:-56.9706,-7.52575,0	0/1:11:5,6:5:180:6:216:-7.09207,0,-11.2293	0/1:149:78,71:78:2791:71:2525:-92.7088,0,-185.987	1/1:82:0,82:0:0:82:2917:-173.84,-24.6845,0	0/1:10:2,8:2:72:8:288:-15.6683,0,-3.60302	0/1:15:12,3:12:404:3:108:-2.64893,0,-30.8737	1/1:30:0,30:0:0:30:1076:-58.704,-9.0309,0	0/1:80:51,29:51:1820:29:1044:-37.6686,0,-130.678	1/1:6:0,6:0:0:6:216:-12.1596,-1.80618,0	1/1:247:0,247:0:0:247:8826:-562.254,-74.3544,0	0/1:173:98,75:98:3467:75:2668:-107.183,0,-243.086	1/1:58:2,56:2:72:56:2003:-102.495,-11.2527,0	1/1:105:0,105:0:0:105:3723:-221.771,-31.6082,0	0/1:189:98,91:98:3473:91:3229:-136.323,0,-239.852	1/1:126:1,125:1:36:125:4471:-259.752,-34.5062,0	1/1:22:0,22:0:0:22:792:-43.4447,-6.62266,0	1/1:75:0,75:0:0:75:2675:-128.206,-22.5773,0	0/1:72:29,43:29:1036:43:1523:-75.4086,0,-68.4062	1/1:19:0,19:0:0:19:671:-40.4835,-5.71957,0	1/1:101:0,101:0:0:101:3586:-172.452,-30.404,0	0/1:68:46,22:46:1624:22:788:-17.2485,0,-108.524	1/1:104:1,103:1:36:103:3659:-197.19,-27.961,0	1/1:196:0,196:0:0:196:6931:-416.314,-59.0019,0	1/1:157:0,157:0:0:157:5563:-268.472,-47.2617,0	1/1:119:0,119:0:0:119:4237:-203.73,-35.8226,0	1/1:3:0,3:0:0:3:108:-5.29628,-0.90309,0	1/1:137:1,136:1:36:136:4790:-260.404,-37.895,0	0/1:138:73,65:73:2586:65:2324:-68.5369,0,-165.663	1/1:199:0,199:0:0:199:7100:-421.8,-59.905,0	1/1:68:0,68:0:0:68:2431:-144.351,-20.47,0	1/1:57:0,57:0:0:57:2052:-120.525,-17.1587,0	0/1:60:28,32:28:982:32:1137:-49.3778,0,-66.247	1/1:83:0,83:0:0:83:2935:-174.891,-24.9855,0	0/1:25:14,11:14:504:11:396:-11.6558,0,-31.6606	1/1:75:0,75:0:0:75:2673:-128.438,-22.5773,0	1/1:60:0,60:0:0:60:2148:-102.912,-18.0618,0	1/1:26:0,26:0:0:26:928:-50.9965,-7.82678,0	0/1:74:34,40:34:1204:40:1427:-55.5618,0,-79.1091	0/1:48:33,15:33:1155:15:540:-17.8306,0,-85.0675	1/1:135:0,135:0:0:135:4802:-283.347,-40.6391,0	1/1:59:0,59:0:0:59:2092:-124.741,-17.7608,0
chr02	12920016	.	G	A	20497.3	PASS	AB=0.380422;ABP=438.2;AC=29;AF=0.154255;AN=188;AO=1342;CIGAR=1X;DP=15368;DPB=15368;DPRA=0.875032;EPP=2917.13;EPPR=30453.6;GTI=4;LEN=1;MEANALT=1;MQM=59.921;MQMR=59.8992;NS=94;NUMALT=1;ODDS=1.57752;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48079;QR=500754;RO=14023;RPL=1301;RPP=2571.88;RPPR=365.974;RPR=41;RUN=1;SAF=1301;SAP=2571.88;SAR=41;SRF=7777;SRP=365.974;SRR=6246;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:139:139,0:139:4958:0:0:0,-41.8432,-446.158	0/0:220:220,0:220:7831:0:0:0,-66.2266,-704.813	0/0:250:250,0:250:8923:0:0:0,-75.2575,-803.017	0/0:279:279,0:279:9967:0:0:0,-83.9874,-896.959	0/1:160:119,41:119:4272:41:1472:-84.6113,0,-336.483	0/1:131:77,54:77:2760:54:1925:-134.091,0,-209.207	0/0:246:246,0:246:8788:0:0:0,-74.0534,-790.906	0/0:322:322,0:322:11465:0:0:0,-96.9317,-1031.66	0/0:247:247,0:247:8839:0:0:0,-74.3544,-795.478	0/0:179:179,0:179:6420:0:0:0,-53.8844,-577.884	0/0:112:112,0:112:4011:0:0:0,-33.7154,-361.092	0/0:169:168,1:168:6000:1:36:0,-47.2758,-536.475	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.621	0/1:95:67,28:67:2356:28:1008:-62.4385,0,-183.691	0/1:56:34,22:34:1212:22:792:-54.748,0,-92.5286	0/1:50:35,15:35:1243:15:528:-32.7999,0,-97.1132	0/0:148:148,0:148:5281:0:0:0,-44.5524,-475.426	0/1:42:28,14:28:1008:14:504:-33.0548,0,-78.3931	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.384	0/1:250:167,83:167:5950:83:2988:-193.624,0,-460.347	0/1:265:153,112:153:5458:112:4024:-282.574,0,-411.562	0/0:156:156,0:156:5568:0:0:0,-46.9607,-501.24	0/0:217:217,0:217:7767:0:0:0,-65.3235,-699.042	0/1:158:86,72:86:3060:72:2592:-185.961,0,-228.065	0/0:165:164,1:164:5849:1:36:0,-46.0717,-522.852	0/0:616:615,1:615:21984:1:36:0,-181.836,-1974.39	0/0:354:354,0:354:12637:0:0:0,-106.565,-1137.13	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:427:427,0:427:15296:0:0:0,-128.54,-1376.34	0/0:234:234,0:234:8347:0:0:0,-70.441,-751.213	0/1:180:124,56:124:4423:56:2012:-127.168,0,-344.036	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:327:327,0:327:11663:0:0:0,-98.4368,-1049.54	0/0:159:159,0:159:5627:0:0:0,-47.8638,-506.545	0/1:114:80,34:80:2834:34:1220:-75.7894,0,-220.979	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:221:221,0:221:7897:0:0:0,-66.5276,-710.746	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.624	0/0:354:354,0:354:12661:0:0:0,-106.565,-1139.26	0/0:132:132,0:132:4709:0:0:0,-39.736,-423.965	0/1:116:77,39:77:2748:39:1400:-91.3797,0,-212.641	0/0:217:217,0:217:7754:0:0:0,-65.3235,-697.888	0/1:204:117,87:117:4184:87:3132:-220.695,0,-315.332	0/0:269:268,1:268:9572:1:26:0,-78.3772,-858.13	0/0:144:144,0:144:5124:0:0:0,-43.3483,-461.301	0/0:205:205,0:205:7337:0:0:0,-61.7111,-660.36	0/0:264:264,0:264:9452:0:0:0,-79.4719,-850.633	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/0:171:171,0:171:6117:0:0:0,-51.4761,-550.604	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.243	0/1:14:8,6:8:288:6:206:-14.6608,0,-22.053	0/1:163:90,73:90:3236:73:2604:-185.539,0,-242.388	0/0:97:97,0:97:3449:0:0:0,-29.1999,-310.62	0/1:31:15,16:15:523:16:576:-42.8339,0,-38.0665	0/1:27:16,11:16:572:11:388:-27.1255,0,-43.6856	0/0:182:179,0:179:6374:0:0:0,-53.8844,-573.2	0/1:130:72,58:72:2562:58:2075:-147.885,0,-191.696	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:202:200,2:200:7116:2:72:0,-53.9713,-633.601	0/1:293:163,130:163:5832:130:4638:-329.381,0,-436.784	0/0:132:131,1:131:4688:1:36:0,-36.1377,-418.473	0/0:123:123,0:123:4384:0:0:0,-37.0267,-394.729	0/1:216:136,80:136:4852:80:2852:-191.893,0,-371.804	0/0:320:319,1:319:11371:1:36:0,-92.7313,-1019.59	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.653	0/0:153:153,0:153:5500:0:0:0,-46.0576,-495.043	0/1:132:56,76:56:2008:76:2728:-206.006,0,-141.255	0/0:57:57,0:57:2018:0:0:0,-17.1587,-181.889	0/0:211:211,0:211:7506:0:0:0,-63.5173,-675.563	0/1:107:77,30:77:2735:30:1080:-65.303,0,-214.18	0/0:341:341,0:341:12171:0:0:0,-102.651,-1095.21	0/0:204:204,0:204:7280:0:0:0,-61.4101,-655.247	0/0:358:358,0:358:12726:0:0:0,-107.769,-1145.11	0/0:190:189,1:189:6761:1:36:0,-53.5974,-604.931	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:188:188,0:188:6709:0:0:0,-56.5936,-603.872	0/1:199:128,71:128:4577:71:2556:-170.385,0,-352.178	0/0:312:312,0:312:11188:0:0:0,-93.9214,-1006.55	0/0:149:149,0:149:5327:0:0:0,-44.8535,-479.555	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.739	0/1:101:62,39:62:2220:39:1396:-95.5351,0,-169.658	0/0:262:262,0:262:9367:0:0:0,-78.8699,-842.974	0/1:45:31,14:31:1112:14:489:-30.7925,0,-86.8441	0/0:113:113,0:113:3992:0:0:0,-34.0164,-359.358	0/0:121:121,0:121:4336:0:0:0,-36.4246,-390.398	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.846	0/1:118:98,20:98:3493:20:716:-29.2462,0,-279.049	0/1:88:44,44:44:1576:44:1580:-116.001,0,-115.641	0/0:240:240,0:240:8563:0:0:0,-72.2472,-770.671	0/0:190:190,0:190:6775:0:0:0,-57.1957,-609.818
chr02	12921765	.	C	T	130804	PASS	AB=0.535438;ABP=21.3249;AC=158;AF=0.840426;AN=188;AO=5874;CIGAR=1X;DP=6662;DPB=6662;DPRA=0;EPP=12758.2;EPPR=1707.62;GTI=3;LEN=1;MEANALT=1.03191;MQM=59.904;MQMR=59.9771;NS=94;NUMALT=1;ODDS=4.10307;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210535;QR=28066;RO=785;RPL=0;RPP=12758.2;RPPR=1707.62;RPR=5874;RUN=1;SAF=5874;SAP=12758.2;SAR=0;SRF=785;SRP=1707.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1345:-121.348,-11.4391,0	1/1:92:0,92:0:0:92:3308:-297.85,-27.6948,0	1/1:105:0,105:0:0:105:3760:-338.599,-31.6082,0	1/1:181:0,181:0:0:181:6508:-585.782,-54.4864,0	0/1:52:28,23:28:1008:23:828:-59.1318,0,-75.324	0/1:33:9,24:9:320:24:856:-67.4271,0,-19.2084	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:36:2,34:2:72:34:1224:-103.629,-4.00036,0	1/1:70:1,69:1:36:69:2468:-218.775,-17.4738,0	1/1:26:0,26:0:0:26:932:-84.1985,-7.82678,0	1/1:74:0,74:0:0:74:2652:-238.917,-22.2762,0	1/1:47:0,47:0:0:47:1684:-151.846,-14.1484,0	0/1:46:24,22:24:860:22:792:-57.7583,0,-63.8745	0/1:43:20,23:20:712:23:824:-61.539,0,-51.4599	0/1:30:19,11:19:684:11:392:-26.5892,0,-52.8594	1/1:64:0,64:0:0:64:2281:-205.55,-19.2659,0	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	1/1:26:0,26:0:0:26:936:-84.5583,-7.82678,0	0/1:90:32,58:32:1144:58:2053:-157.946,0,-76.1768	0/1:50:24,26:24:856:26:936:-69.508,0,-62.3096	1/1:221:0,221:0:0:221:7922:-713.002,-66.5276,0	1/1:81:0,81:0:0:81:2912:-262.314,-24.3834,0	0/1:69:34,35:34:1220:35:1256:-92.5742,0,-89.3357	1/1:47:0,47:0:0:47:1684:-151.76,-14.1484,0	1/1:274:0,274:0:0:274:9804:-882.279,-82.4822,0	1/1:103:0,103:0:0:103:3669:-330.413,-31.0061,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:203:0,203:0:0:203:7268:-653.375,-61.1091,0	1/1:160:0,160:0:0:160:5732:-515.937,-48.1648,0	0/1:103:52,51:52:1849:51:1832:-134.155,0,-135.682	1/1:30:0,30:0:0:30:1080:-97.5128,-9.0309,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:19:10,9:10:360:9:320:-23.4224,0,-27.0247	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:231:0,231:0:0:231:8288:-745.923,-69.5379,0	1/1:118:0,118:0:0:118:4232:-380.973,-35.5215,0	0/1:34:20,14:20:716:14:500:-35.0996,0,-54.5327	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:116:0,116:0:0:116:4141:-372.871,-34.9195,0	1/1:26:0,26:0:0:26:928:-83.8377,-7.82678,0	1/1:99:0,99:0:0:99:3552:-319.884,-29.802,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	0/1:52:25,27:25:900:27:972:-72.1435,0,-65.6498	1/1:59:0,59:0:0:59:2116:-190.708,-17.7608,0	0/1:45:24,21:24:860:21:752:-54.4599,0,-64.1755	1/1:109:0,109:0:0:109:3900:-351.174,-32.8123,0	1/1:121:0,121:0:0:121:4328:-389.61,-36.4246,0	1/1:87:0,87:0:0:87:3120:-280.988,-26.1896,0	1/1:122:1,121:1:36:121:4352:-388.167,-33.1274,0	0/1:11:1,10:1:36:10:360:-29.4267,0,-0.286945	1/1:55:0,55:0:0:55:1980:-178.473,-16.5567,0	1/1:24:0,24:0:0:24:864:-78.0818,-7.22472,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:88:31,57:31:1104:57:2036:-157.021,0,-73.18	1/1:47:0,47:0:0:47:1676:-151.125,-14.1484,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:32:7,25:7:252:25:896:-71.327,0,-13.396	1/1:38:0,38:0:0:38:1364:-123.06,-11.4391,0	0/1:91:43,48:43:1544:48:1724:-128.051,0,-111.859	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:115:0,114:0:0:114:4088:-367.317,-34.3174,0	0/1:95:38,57:38:1356:57:2044:-155.633,0,-93.7426	1/1:63:3,60:3:108:60:2152:-183.871,-8.88972,0	1/1:64:0,64:0:0:64:2300:-207.26,-19.2659,0	0/1:98:44,53:44:1561:53:1900:-141.631,0,-111.22	1/1:25:0,25:0:0:25:896:-80.9602,-7.52575,0	1/1:14:0,14:0:0:14:504:-45.6973,-4.21442,0	1/1:48:0,48:0:0:48:1720:-155.085,-14.4494,0	0/1:74:23,51:23:824:51:1836:-143.236,0,-52.2071	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:75:0,75:0:0:75:2677:-241.087,-22.5773,0	0/1:43:18,25:18:644:25:892:-67.655,0,-45.3463	1/1:82:0,82:0:0:82:2948:-265.552,-24.6845,0	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	1/1:89:0,89:0:0:89:3196:-287.776,-26.7917,0	1/1:96:0,96:0:0:96:3452:-310.873,-28.8989,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:99:0,99:0:0:99:3548:-319.527,-29.802,0	0/1:138:75,63:75:2668:63:2249:-161.042,0,-198.824	1/1:150:0,150:0:0:150:5384:-484.688,-45.1545,0	1/1:86:0,86:0:0:86:3080:-277.425,-25.8886,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:64:30,34:30:1072:34:1224:-91.1144,0,-77.5265	1/1:148:0,148:0:0:148:5316:-478.571,-44.5524,0	0/1:42:16,26:16:572:26:921:-70.5615,0,-39.1702	1/1:76:0,76:0:0:76:2728:-245.674,-22.8783,0	1/1:64:0,64:0:0:64:2296:-206.898,-19.2659,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:104:57,47:57:2032:47:1673:-119.548,0,-151.845	0/1:74:44,30:44:1580:30:1080:-75.237,0,-120.215	1/1:49:0,49:0:0:49:1760:-158.683,-14.7505,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0
chr02	13235293	.	C	G	182226	PASS	AB=0.474279;ABP=18.7604;AC=158;AF=0.840426;AN=188;AO=8251;CIGAR=1X;DP=9705;DPB=9705;DPRA=104.344;EPP=17919.8;EPPR=3151.65;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.9107;MQMR=59.9345;NS=94;NUMALT=1;ODDS=0.0158999;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=294532;QR=51866;RO=1450;RPL=7;RPP=17859.1;RPPR=3151.65;RPR=8244;RUN=1;SAF=8244;SAP=17859.1;SAR=7;SRF=1450;SRP=3151.65;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53:0:0:53:1881:-169.567,-15.9546,0	1/1:152:0,152:0:0:152:5425:-488.37,-45.7566,0	1/1:144:0,144:0:0:144:5142:-462.906,-43.3483,0	1/1:231:0,231:0:0:231:8251:-742.305,-69.5379,0	0/1:82:49,33:49:1752:33:1150:-79.1175,0,-133.271	0/1:48:24,24:24:860:24:864:-63.6331,0,-63.2724	1/1:183:0,183:0:0:183:6513:-586.235,-55.0885,0	1/1:183:0,182:0:0:182:6490:-583.808,-54.7875,0	1/1:108:0,108:0:0:108:3846:-346.336,-32.5112,0	1/1:85:0,85:0:0:85:3011:-271.193,-25.5876,0	1/1:80:0,80:0:0:80:2872:-258.711,-24.0824,0	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0	1/1:89:0,89:0:0:89:3173:-285.793,-26.7917,0	0/1:75:33,42:33:1184:42:1497:-112.445,0,-84.2911	0/1:70:34,36:34:1216:36:1292:-95.5117,0,-88.5882	0/1:56:25,31:25:892:31:1116:-83.894,0,-63.742	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	0/1:73:27,46:27:972:46:1652:-126.993,0,-65.8227	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:279:161,118:161:5750:118:4221:-296.073,0,-433.626	0/1:155:77,78:77:2740:78:2773:-203.149,0,-200.179	1/1:84:0,84:0:0:84:3000:-270.23,-25.2865,0	1/1:80:1,79:1:36:79:2840:-252.239,-20.4841,0	0/1:127:75,52:75:2676:52:1849:-128.448,0,-202.847	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	1/1:335:0,335:0:0:335:11921:-1072.05,-100.845,0	1/1:290:0,290:0:0:290:10381:-934.176,-87.2987,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:231:0,231:0:0:231:8257:-742.785,-69.5379,0	1/1:118:0,118:0:0:118:4225:-380.428,-35.5215,0	0/1:125:61,64:61:2192:64:2288:-168.553,0,-159.915	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:2,9:2:72:9:320:-25.8172,0,-3.52539	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:226:0,226:0:0:226:8033:-722.979,-68.0328,0	1/1:104:0,104:0:0:104:3725:-335.449,-31.3071,0	0/1:72:34,38:34:1211:38:1368:-101.711,0,-87.6214	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:156:0,156:0:0:156:5539:-498.635,-46.9607,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:106:0,105:0:0:105:3748:-337.16,-31.6082,0	1/1:93:0,93:0:0:93:3307:-297.835,-27.9958,0	0/1:78:44,34:44:1561:34:1224:-86.9867,0,-117.298	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:172:93,79:93:3336:79:2829:-203.07,0,-248.672	1/1:128:0,128:0:0:128:4592:-413.437,-38.5318,0	1/1:111:0,111:0:0:111:3962:-356.755,-33.4143,0	1/1:171:0,171:0:0:171:6118:-550.717,-51.4761,0	1/1:214:0,214:0:0:214:7622:-685.993,-64.4204,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:107:0,107:0:0:107:3824:-344.346,-32.2102,0	1/1:20:0,20:0:0:20:708:-64.045,-6.0206,0	0/1:22:11,11:11:392:11:392:-28.9974,0,-28.9974	0/1:180:90,90:90:3216:90:3224:-236.059,0,-235.478	1/1:45:0,45:0:0:45:1610:-145.185,-13.5464,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:17:4,12:4:144:12:428:-33.6828,0,-8.13731	1/1:76:0,76:0:0:76:2726:-245.581,-22.8783,0	0/1:89:43,46:43:1544:46:1641:-121.185,0,-112.461	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:214:0,214:0:0:214:7653:-688.799,-64.4204,0	0/1:226:146,80:146:5220:80:2853:-188.974,0,-401.902	1/1:77:3,74:3:108:74:2641:-227.86,-13.1041,0	1/1:90:1,89:1:36:89:3176:-282.462,-23.4944,0	0/1:190:94,96:94:3372:96:3395:-248.337,0,-246.5	1/1:74:0,73:0:0:73:2612:-234.966,-21.9752,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	0/1:102:37,65:37:1328:65:2306:-177.077,0,-89.1172	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:137:0,137:0:0:137:4867:-438.173,-41.2411,0	0/1:82:43,39:43:1544:39:1396:-101.167,0,-114.564	1/1:176:0,176:0:0:176:6260:-563.473,-52.9813,0	1/1:100:0,100:0:0:100:3596:-323.845,-30.103,0	1/1:110:0,110:0:0:110:3925:-353.239,-33.1133,0	1/1:132:3,129:3:108:129:4609:-404.892,-29.6608,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:120:0,120:0:0:120:4274:-384.826,-36.1236,0	0/1:116:84,32:84:3000:32:1144:-68.3419,0,-235.283	1/1:251:0,251:0:0:251:8920:-802.625,-75.5585,0	1/1:101:0,101:0:0:101:3585:-322.854,-30.404,0	1/1:87:0,87:0:0:87:3093:-278.597,-26.1896,0	0/1:85:45,40:45:1612:40:1425:-102.958,0,-119.783	1/1:136:1,135:1:36:135:4856:-433.573,-37.3418,0	0/1:48:21,27:21:756:27:968:-72.9879,0,-53.9178	1/1:90:0,90:0:0:90:3194:-287.677,-27.0927,0	1/1:85:0,85:0:0:85:3033:-273.199,-25.5876,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	0/1:81:35,46:35:1244:46:1656:-124.945,0,-87.8812	0/1:77:47,30:47:1684:30:1061:-72.6139,0,-128.662	1/1:108:0,108:0:0:108:3838:-345.61,-32.5112,0	1/1:129:0,129:0:0:129:4605:-414.609,-38.8329,0
chr02	13235332	.	CAGA	CAGC,TAGC	211399	PASS	AB=0.468501,0.527154;ABP=26.8132,20.6997;AC=158,30;AF=0.840426,0.159574;AN=188;AO=8192,1468;CIGAR=3M1X,1X2M1X;DP=9728;DPB=9753.5;DPRA=104.591,0.955941;EPP=17774.3,3190.73;EPPR=33.4109;GTI=1;LEN=1,4;MEANALT=1.83871,2.45946;MQM=59.9315,59.9298;MQMR=59.3571;NS=94;NUMALT=2;ODDS=1.06548;PAIRED=0,0;PAIREDR=0;PAO=50,52;PQA=1667,1739;PQR=0;PRO=0;QA=290410,51497;QR=439;RO=14;RPL=8189,1468;RPP=17765.7,3190.73;RPPR=25.3454;RPR=3,0;RUN=1,1;SAF=8191,1468;SAP=17783,3190.73;SAR=1,0;SRF=13;SRP=25.3454;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,51,0:0:0:51,0:1821,0:-163.81,-15.3525,0,-163.81,-15.3525,-163.81	1/1:151:0,151,0:0:0:151,0:5385,0:-484.78,-45.4555,0,-484.78,-45.4555,-484.78	1/1:144:0,143,0:0:0:143,0:5093,0:-458.253,-43.0473,0,-458.253,-43.0473,-458.253	1/1:231:1,225,0:1:25:225,0:8006,0:-718.034,-65.7872,0,-718.335,-67.7318,-720.284	1/2:83:0,34,48:0:0:34,48:1215,1671:-234.931,-135.864,-125.629,-99.061,0,-84.6115	1/2:48:1,24,23:1:36:24,23:851,820:-132.93,-63.9017,-59.6145,-66.3877,0,-62.4016	1/1:180:1,179,0:1:27:179,0:6344,0:-568.205,-51.4856,0,-568.506,-53.8844,-570.634	1/1:191:0,191,0:0:0:191,0:6764,0:-608.83,-57.4967,0,-608.83,-57.4967,-608.83	1/1:111:0,110,0:0:0:110,0:3918,0:-352.451,-33.1133,0,-352.451,-33.1133,-352.451	1/1:84:0,84,0:0:0:84,0:2979,0:-268.217,-25.2865,0,-268.217,-25.2865,-268.217	1/1:80:0,79,0:0:0:79,0:2788,0:-250.813,-23.7814,0,-250.813,-23.7814,-250.813	1/1:96:1,95,0:1:29:95,0:3324,0:-296.481,-26.001,0,-296.782,-28.5979,-299.088	1/1:88:0,88,0:0:0:88,0:3134,0:-282.278,-26.4906,0,-282.278,-26.4906,-282.278	1/2:75:1,42,32:1:26:42,32:1496,1122:-210.993,-89.3555,-78.7483,-119.992,0,-112.396	1/2:73:0,38,35:0:0:38,35:1355,1230:-210.737,-100.283,-88.8437,-110.635,0,-100.099	1/2:57:0,32,25:0:0:32,25:1144,890:-166.174,-72.8936,-63.2607,-93.6366,0,-86.1108	1/1:96:0,96,0:0:0:96,0:3399,0:-306.125,-28.8989,0,-306.125,-28.8989,-306.125	1/2:74:0,46,28:0:0:46,28:1614,986:-211.97,-80.624,-66.7766,-131.698,0,-123.269	1/1:67:0,67,0:0:0:67,0:2386,0:-214.997,-20.169,0,-214.997,-20.169,-214.997	1/2:279:0,118,160:0:0:118,160:4188,5620:-798.394,-457.166,-421.645,-340.983,0,-292.818	1/2:153:0,75,77:0:0:75,77:2649,2684:-434.002,-218.274,-195.697,-215.729,0,-192.55	1/1:82:0,82,0:0:0:82,0:2905,0:-261.568,-24.6845,0,-261.568,-24.6845,-261.568	1/1:80:0,78,1:0:0:78,1:2779,34:-250.04,-23.4803,0,-247.282,-20.6924,-246.981	1/2:128:0,53,75:0:0:53,75:1853,2620:-364.134,-213.463,-197.508,-151.021,0,-128.444	1/1:73:0,73,0:0:0:73,0:2603,0:-234.518,-21.9752,0,-234.518,-21.9752,-234.518	1/1:330:1,327,0:1:36:327,0:11626,0:-1042.46,-95.5791,0,-1042.76,-98.4368,-1045.69	1/1:287:0,282,0:0:0:282,0:10036,0:-902.804,-84.8905,0,-902.804,-84.8905,-902.804	1/1:42:0,42,0:0:0:42,0:1495,0:-134.844,-12.6433,0,-134.844,-12.6433,-134.844	1/1:230:0,230,0:0:0:230,0:8140,0:-732.048,-69.2369,0,-732.048,-69.2369,-732.048	1/1:114:1,112,0:1:30:112,0:3976,0:-355.065,-31.2818,0,-355.366,-33.7154,-357.764	1/2:130:0,67,63:0:0:67,63:2378,2203:-373.084,-179.331,-159.162,-193.87,0,-174.905	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:12:0,9,3:0:0:9,3:324,101:-34.9604,-8.52004,-5.81077,-26.7827,0,-25.8796	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:230:0,230,0:0:0:230,0:8085,0:-727.374,-69.2369,0,-727.374,-69.2369,-727.374	1/1:104:1,101,1:1:35:101,1:3580,36:-318.9,-27.5596,0,-316.263,-27.465,-318.81	1/2:73:0,38,35:0:0:38,35:1338,1208:-207.379,-98.4833,-87.0442,-109.244,0,-98.7075	1/2:3:0,2,1:0:0:2,1:68,36:-8.79971,-3.29724,-2.69518,-5.85565,0,-5.55462	1/1:155:0,154,0:0:0:154,0:5460,0:-491.249,-46.3586,0,-491.249,-46.3586,-491.249	1/1:59:0,59,0:0:0:59,0:2107,0:-189.899,-17.7608,0,-189.899,-17.7608,-189.899	1/1:104:0,104,0:0:0:104,0:3713,0:-334.371,-31.3071,0,-334.371,-31.3071,-334.371	1/1:98:2,96,0:2:72:96,0:3342,0:-294.054,-22.7549,0,-294.656,-28.8989,-300.531	1/2:78:0,34,44:0:0:34,44:1184,1528:-220.665,-124.388,-114.153,-96.4514,0,-83.2061	1/1:77:0,77,0:0:0:77,0:2748,0:-247.391,-23.1793,0,-247.391,-23.1793,-247.391	1/2:172:0,77,94:0:0:77,94:2679,3298:-486.206,-268.382,-245.203,-217.813,0,-189.516	1/1:122:0,116,1:0:0:116,1:4094,32:-368.28,-34.9195,0,-365.702,-32.3505,-365.401	1/1:115:0,115,0:0:0:115,0:4086,0:-367.865,-34.6185,0,-367.865,-34.6185,-367.865	1/1:175:0,174,0:0:0:174,0:6200,0:-557.378,-52.3792,0,-557.378,-52.3792,-557.378	1/1:212:0,211,0:0:0:211,0:7492,0:-673.899,-63.5173,0,-673.899,-63.5173,-673.899	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:106:0,105,0:0:0:105,0:3713,0:-334.012,-31.6082,0,-334.012,-31.6082,-334.012	1/1:21:0,21,0:0:0:21,0:747,0:-67.4397,-6.32163,0,-67.4397,-6.32163,-67.4397	1/2:23:0,11,12:0:0:11,12:396,409:-65.8455,-33.5248,-30.2135,-32.6714,0,-29.0591	1/2:180:0,86,91:0:0:86,91:3029,3207:-507.706,-261.114,-235.226,-246.597,0,-219.203	1/1:45:0,45,0:0:0:45,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chr02	13235377	.	G	A	19965.5	PASS	AB=0.475854;ABP=15.9087;AC=31;AF=0.164894;AN=188;AO=1225;CIGAR=1X;DP=9289;DPB=9289;DPRA=0.975877;EPP=2628.43;EPPR=16772.4;GTI=1;LEN=1;MEANALT=1.05128;MQM=59.9559;MQMR=59.9821;NS=94;NUMALT=1;ODDS=3.90675;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43639;QR=287655;RO=8059;RPL=1221;RPP=2628.43;RPPR=16797.9;RPR=4;RUN=1;SAF=0;SAP=2663.06;SAR=1225;SRF=3;SRP=17476.9;SRR=8056;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:124:124,0:124:4407:0:0:0,-37.3277,-396.803	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:172:172,0:172:6176:0:0:0,-51.7772,-555.936	0/1:74:39,35:39:1404:35:1238:-89.4466,0,-104.383	0/1:50:29,21:29:1036:21:743:-52.1418,0,-78.5024	0/0:127:127,0:127:4539:0:0:0,-38.2308,-408.677	0/0:216:216,0:216:7731:0:0:0,-65.0225,-695.822	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.734	0/0:102:100,1:100:3560:1:36:0,-27.1656,-317.012	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:84:84,0:84:2969:0:0:0,-25.2865,-267.443	0/0:71:71,0:71:2515:0:0:0,-21.3731,-226.603	0/1:86:48,38:48:1716:38:1364:-97.1721,0,-128.837	0/1:69:40,29:40:1431:29:1040:-73.1433,0,-108.311	0/1:52:27,25:27:968:25:875:-63.4119,0,-71.7838	0/0:74:73,0:73:2616:0:0:0,-21.9752,-235.476	0/1:62:35,27:35:1256:27:955:-67.601,0,-94.6814	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:246:133,113:133:4729:113:4052:-290.813,0,-351.717	0/1:164:95,68:95:3382:68:2411:-167.964,0,-255.316	0/0:97:97,0:97:3465:0:0:0,-29.1999,-312.061	0/0:84:84,0:84:2977:0:0:0,-25.2865,-268.163	0/1:107:50,57:50:1792:57:2040:-151.662,0,-129.352	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.571	0/0:293:293,0:293:10449:0:0:0,-88.2018,-940.325	0/0:200:199,1:199:7102:1:36:0,-56.6077,-635.642	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:285:284,1:284:10089:1:36:0,-82.1953,-904.35	0/0:107:107,0:107:3819:0:0:0,-32.2102,-343.883	0/1:108:52,56:52:1845:56:1982:-146.142,0,-133.817	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:220:220,0:220:7880:0:0:0,-66.2266,-709.226	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919	0/1:86:47,39:47:1680:39:1388:-99.3303,0,-125.599	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/0:132:132,0:132:4706:0:0:0,-39.736,-423.687	0/0:61:60,1:60:2156:1:36:0,-14.7646,-190.709	0/0:149:148,0:148:5263:0:0:0,-44.5524,-473.45	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/1:77:56,21:56:1995:21:752:-44.8223,0,-156.644	0/0:76:76,0:76:2709:0:0:0,-22.8783,-243.783	0/1:158:68,90:68:2420:90:3203:-240.931,0,-170.494	0/0:159:158,1:158:5652:1:36:0,-44.2655,-505.194	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:136:136,0:136:4867:0:0:0,-40.9401,-438.183	0/0:190:190,0:190:6812:0:0:0,-57.1957,-613.15	0/1:11:2,9:2:63:9:324:-26.1945,0,-2.67182	0/0:150:150,0:150:5345:0:0:0,-45.1545,-481.184	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:183:73,110:73:2620:110:3893:-295.47,0,-180.959	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:14:5,9:5:180:9:316:-24.5644,0,-12.3376	0/1:18:10,8:10:356:8:275:-19.6649,0,-26.9627	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:98:60,38:60:2136:38:1352:-92.4794,0,-163.007	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:134:134,0:134:4799:0:0:0,-40.338,-432.065	0/1:217:142,75:142:5055:75:2663:-174.591,0,-389.645	0/0:106:104,2:104:3708:2:72:0,-25.0725,-327.075	0/0:80:80,0:80:2851:0:0:0,-24.0824,-256.828	0/1:144:49,95:49:1756:95:3382:-261.247,0,-114.976	0/0:129:127,2:127:4548:2:72:0,-31.9961,-402.65	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.489	0/1:68:43,25:43:1527:25:900:-60.851,0,-117.252	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5128	0/0:94:94,0:94:3360:0:0:0,-28.2968,-302.617	0/1:71:37,34:37:1307:34:1224:-89.0939,0,-96.5576	0/0:164:164,0:164:5846:0:0:0,-49.3689,-526.249	0/0:174:174,0:174:6201:0:0:0,-52.3792,-558.189	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:142:141,1:141:5020:1:36:0,-39.148,-448.349	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:116:116,0:116:4082:0:0:0,-34.9195,-367.567	0/1:100:61,39:61:2150:39:1396:-95.8279,0,-163.664	0/0:219:219,0:219:7834:0:0:0,-65.9256,-705.088	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:66:65,1:65:2307:1:36:0,-16.2697,-204.293	0/1:69:37,32:37:1307:32:1148:-82.8588,0,-97.1597	0/0:157:157,0:157:5616:0:0:0,-47.2617,-505.558	0/1:36:22,14:22:783:14:504:-34.861,0,-59.9559	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/0:75:74,0:74:2651:0:0:0,-22.2762,-238.476	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/1:80:30,50:30:1076:50:1784:-136.76,0,-73.0705	0/1:70:32,38:32:1148:38:1364:-101.986,0,-82.5577	0/0:92:92,0:92:3272:0:0:0,-27.6948,-294.702	0/0:142:142,0:142:5042:0:0:0,-42.7463,-453.929
chr02	13411485	.	TAA	CAA	19707.8	PASS	AB=0.597176;ABP=200.521;AC=26;AF=0.138298;AN=188;AO=1450;CIGAR=1X2M;DP=8192;DPB=8192;DPRA=1.05751;EPP=3151.65;EPPR=14597.5;GTI=5;LEN=1;MEANALT=1.17143;MQM=34.4297;MQMR=47.8354;NS=94;NUMALT=1;ODDS=1.03052;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49493;QR=238766;RO=6721;RPL=0;RPP=3151.65;RPPR=14597.5;RPR=1450;RUN=1;SAF=1450;SAP=3151.65;SAR=0;SRF=6721;SRP=14597.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:48,0:48:1710:0:0:0,-14.4494,-153.043	0/0:92:92,0:92:3286:0:0:0,-27.6948,-293.232	0/0:158:158,0:158:5614:0:0:0,-47.5627,-501.612	0/0:224:224,0:224:7930:0:0:0,-67.4307,-706.811	0/1:57:14,43:14:486:43:1455:-103.153,0,-26.607	0/1:26:3,23:3:106:23:807:-59.43,0,-1.79001	0/0:125:125,0:125:4410:0:0:0,-37.6287,-393.254	0/0:124:124,0:124:4409:0:0:0,-37.3277,-394.628	0/0:101:101,0:101:3607:0:0:0,-30.404,-322.628	0/0:80:80,0:80:2836:0:0:0,-24.0824,-253.107	0/0:48:48,0:48:1722:0:0:0,-14.4494,-153.256	0/0:77:76,0:76:2704:0:0:0,-22.8783,-241.426	0/0:50:50,0:50:1771:0:0:0,-15.0515,-158.847	0/1:70:34,36:34:1214:36:1241:-81.5089,0,-87.4329	0/1:51:26,25:26:926:25:827:-52.8346,0,-67.2588	0/1:34:13,21:13:460:21:733:-50.5912,0,-31.2285	0/0:53:50,0:50:1787:0:0:0,-15.0515,-160.068	0/1:42:18,24:18:637:24:832:-56.616,0,-44.7617	0/0:31:31,0:31:1116:0:0:0,-9.33193,-99.9764	0/1:252:106,145:106:3769:145:4929:-330.432,0,-260.912	0/1:167:64,103:64:2264:103:3549:-243.047,0,-152.307	0/0:50:50,0:50:1772:0:0:0,-15.0515,-158.503	0/0:97:97,0:97:3448:0:0:0,-29.1999,-307.836	0/1:162:65,97:65:2296:97:3372:-229.208,0,-156.868	0/0:41:41,0:41:1462:0:0:0,-12.3422,-130.775	0/0:220:218,0:218:7757:0:0:0,-65.6245,-689.604	0/0:287:284,0:284:10120:0:0:0,-85.4925,-902.001	0/0:44:44,0:44:1572:0:0:0,-13.2453,-140.341	0/0:105:105,0:105:3736:0:0:0,-31.6081,-332.568	0/0:118:118,0:118:4203:0:0:0,-35.5215,-376.043	0/1:142:69,73:69:2457:73:2461:-159.473,0,-174.208	0/0:4:4,0:4:139:0:0:0,-1.20412,-12.6492	0/0:16:16,0:16:567:0:0:0,-4.81648,-50.7621	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5312	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81334	0/0:11:11,0:11:394:0:0:0,-3.31133,-35.6474	0/0:140:139,1:139:4960:1:34:0,-39.0451,-438.765	0/0:148:148,0:148:5269:0:0:0,-44.5524,-469.478	0/1:62:28,34:28:966:34:1194:-80.8076,0,-67.3296	0/0:11:10,1:10:356:1:35:0,-0.112291,-28.9727	0/0:149:149,0:149:5277:0:0:0,-44.8535,-471.871	0/0:35:35,0:35:1249:0:0:0,-10.536,-111.974	0/0:105:105,0:105:3687:0:0:0,-31.6081,-329.728	0/0:72:72,0:72:2569:0:0:0,-21.6742,-228.892	0/1:66:22,44:22:788:44:1440:-98.3093,0,-50.5383	0/0:118:117,1:117:4167:1:34:0,-32.4225,-368.491	0/1:166:62,104:62:2192:104:3620:-249.594,0,-146.331	0/0:149:147,1:147:5167:1:34:0,-41.7677,-456.683	0/0:87:87,0:87:3088:0:0:0,-26.1896,-275.605	0/0:128:127,0:127:4508:0:0:0,-38.2308,-401.97	0/0:82:82,0:82:2903:0:0:0,-24.6845,-259.062	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.98707	0/0:176:176,0:176:6236:0:0:0,-52.9813,-557.783	0/0:57:57,0:57:2037:0:0:0,-17.1587,-181.737	0/1:11:10,1:10:360:1:36:-0.112272,0,-29.07	0/1:171:76,94:76:2695:94:3256:-216.756,0,-189.509	0/0:54:54,0:54:1930:0:0:0,-16.2556,-172.204	0/1:5:1,1:1:36:1:34:-2.20999,0,-2.64266	0/0:12:11,1:11:384:1:34:0,-0.513303,-31.5251	0/0:72:72,0:72:2567:0:0:0,-21.6742,-229.481	0/1:81:34,46:34:1220:46:1538:-102.155,0,-84.508	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.41966	0/0:157:156,0:156:5543:0:0:0,-46.9607,-492.907	0/1:265:108,157:108:3818:157:5259:-352.006,0,-260.674	0/0:63:59,4:59:2099:4:140:0,-7.12845,-175.466	0/0:101:101,0:101:3585:0:0:0,-30.404,-318.051	0/1:141:58,83:58:2066:83:2706:-179.267,0,-141.31	0/0:127:126,1:126:4490:1:34:0,-35.1318,-397.562	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.15	0/0:62:61,1:61:2177:1:35:0,-15.4648,-190.232	0/1:62:18,44:18:638:44:1497:-104.764,0,-38.6056	0/0:21:21,0:21:736:0:0:0,-6.32163,-65.7332	0/0:71:71,0:71:2531:0:0:0,-21.3731,-226.745	0/1:69:28,40:28:993:40:1399:-95.7067,0,-68.6047	0/0:149:149,0:149:5288:0:0:0,-44.8535,-472.368	0/0:172:172,0:172:6112:0:0:0,-51.7772,-544.017	0/0:98:98,0:98:3453:0:0:0,-29.5009,-308.862	0/0:110:108,0:108:3821:0:0:0,-32.5112,-341.42	0/0:12:12,0:12:430:0:0:0,-3.61236,-38.847	0/0:128:128,0:128:4534:0:0:0,-38.5318,-403.668	0/1:105:38,67:38:1348:67:2334:-162.55,0,-89.2056	0/0:159:159,0:159:5668:0:0:0,-47.8638,-504.971	0/0:101:101,0:101:3587:0:0:0,-30.404,-320.422	0/0:41:41,0:41:1468:0:0:0,-12.3422,-131.316	0/1:47:13,34:13:466:34:1150:-80.8691,0,-27.821	0/0:68:67,1:67:2388:1:34:0,-17.371,-209.181	0/1:12:2,10:2:72:10:352:-25.9076,0,-3.1873	0/0:48:48,0:48:1682:0:0:0,-14.4494,-151.018	0/0:54:54,0:54:1922:0:0:0,-16.2556,-171.947	0/0:16:16,0:16:574:0:0:0,-4.81648,-51.6563	0/1:83:42,41:42:1497:41:1426:-92.6793,0,-108.511	0/1:59:11,48:11:391:48:1632:-116.925,0,-17.4988	0/0:88:88,0:88:3126:0:0:0,-26.4906,-278.632	0/0:92:92,0:92:3297:0:0:0,-27.6948,-294.156
chr02	13598868	.	C	A	122252	PASS	AB=0.369919;ABP=219.946;AC=149;AF=0.801075;AN=186;AO=4558;CIGAR=1X;DP=8061;DPB=8061;DPRA=0.414468;EPP=383.774;EPPR=255.405;GTI=21;LEN=1;MEANALT=1.01087;MQM=49.4563;MQMR=59.5223;NS=93;NUMALT=1;ODDS=0.201783;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162953;QR=125328;RO=3502;RPL=2726;RPP=383.774;RPPR=255.405;RPR=1832;RUN=1;SAF=4558;SAP=9900.58;SAR=0;SRF=3502;SRP=7607.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1512:-136.028,-12.6433,0	1/1:56:0,56:0:0:56:2016:-181.299,-16.8577,0	1/1:98:0,98:0:0:98:3509:-314.648,-29.5009,0	1/1:104:0,104:0:0:104:3710:-330.705,-31.3071,0	0/1:37:27,10:27:972:10:360:-21.3981,0,-76.646	0/1:26:11,15:11:396:15:540:-40.8877,0,-28.1513	1/1:87:1,86:1:32:86:3069:-270.693,-22.9903,0	1/1:90:0,90:0:0:90:3217:-288.863,-27.0927,0	1/1:59:0,59:0:0:59:2109:-189.801,-17.7608,0	1/1:81:0,81:0:0:81:2878:-256.315,-24.3834,0	1/1:47:0,47:0:0:47:1688:-151.49,-14.1484,0	1/1:47:0,47:0:0:47:1673:-150.633,-14.1484,0	1/1:39:0,39:0:0:39:1385:-124.73,-11.7402,0	0/1:48:30,18:30:1076:18:648:-43.7975,0,-82.4532	0/1:30:15,15:15:532:15:540:-39.5214,0,-39.1813	0/1:45:25,20:25:896:20:720:-51.1507,0,-67.414	1/1:25:0,25:0:0:25:896:-80.6945,-7.52575,0	0/1:21:8,13:8:288:13:453:-34.0777,0,-19.9458	1/1:27:0,27:0:0:27:968:-87.2753,-8.12781,0	0/1:107:52,55:52:1868:55:1972:-144.824,0,-136.134	0/1:75:36,39:36:1268:39:1389:-101.49,0,-91.7656	1/1:77:0,77:0:0:77:2742:-242.986,-23.1793,0	1/1:59:0,59:0:0:59:2105:-188.114,-17.7608,0	0/1:26:12,14:12:432:14:504:-37.5558,0,-31.2101	1/1:57:0,57:0:0:57:2037:-182.05,-17.1587,0	1/1:144:0,144:0:0:144:5132:-456.163,-43.3483,0	1/1:106:0,106:0:0:106:3793:-336.791,-31.9092,0	1/1:11:0,11:0:0:11:396:-35.4548,-3.31133,0	1/1:131:0,131:0:0:131:4697:-416.575,-39.4349,0	1/1:86:0,86:0:0:86:3073:-274.941,-25.8886,0	0/1:122:69,53:69:2476:53:1893:-132.664,0,-186.285	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	1/1:17:0,17:0:0:17:608:-54.4043,-5.11751,0	1/1:8:0,8:0:0:8:288:-26.2302,-2.40824,0	0/0:767:765,2:765:27327:2:72:0,-224.063,-2450.59	1/1:27:0,27:0:0:27:972:-87.6734,-8.12781,0	1/1:87:0,87:0:0:87:3128:-278.992,-26.1896,0	1/1:62:0,62:0:0:62:2232:-199.401,-18.6639,0	0/0:106:97,9:97:3492:9:324:0,-2.44516,-284.989	0/0:206:206,0:206:7380:0:0:0,-62.0122,-663.051	1/1:62:1,61:1:36:61:2173:-189.56,-15.0656,0	1/1:34:0,34:0:0:34:1224:-109.237,-10.235,0	1/1:107:0,107:0:0:107:3833:-340.16,-32.2102,0	1/1:16:0,16:0:0:16:572:-51.2981,-4.81648,0	0/1:21:8,13:8:288:13:468:-35.9584,0,-19.9458	1/1:52:0,52:0:0:52:1857:-165.737,-15.6536,0	0/1:41:28,13:28:1004:13:468:-29.9033,0,-78.3244	1/1:110:0,110:0:0:110:3944:-352.415,-33.1133,0	1/1:64:0,63:0:0:63:2264:-201.52,-18.9649,0	1/1:68:0,68:0:0:68:2421:-216.234,-20.47,0	1/1:121:1,120:1:36:120:4300:-378.662,-32.8264,0	0/0:469:461,8:461:16503:8:288:0,-115.538,-1458.96	1/1:116:0,116:0:0:116:4115:-368.62,-34.9195,0	1/1:50:0,50:0:0:50:1800:-160.903,-15.0515,0	0/0:311:304,7:304:10875:7:252:0,-70.624,-955.336	0/1:50:24,26:24:860:26:936:-68.6284,0,-62.6388	1/1:18:0,18:0:0:18:648:-57.8893,-5.41854,0	0/0:360:358,2:358:12777:2:72:0,-101.594,-1142.19	0/0:384:377,7:377:13528:7:248:0,-93.0915,-1194.15	1/1:94:0,94:0:0:94:3365:-301.042,-28.2968,0	0/1:63:27,36:27:972:36:1292:-94.6588,0,-68.833	.:.:.:.:.:.:.:.	1/1:97:0,97:0:0:97:3425:-304.409,-29.1999,0	0/1:104:56,48:56:1999:48:1728:-123.523,0,-148.862	1/1:34:1,33:1:36:33:1180:-101.8,-6.63675,0	1/1:30:0,30:0:0:30:1065:-95.3157,-9.0309,0	0/1:70:33,37:33:1180:37:1328:-97.7571,0,-85.4218	1/1:143:0,143:0:0:143:5099:-455.691,-43.0473,0	1/1:30:0,30:0:0:30:1065:-95.3964,-9.0309,0	1/1:32:0,32:0:0:32:1147:-103.183,-9.63296,0	0/1:28:14,14:14:504:14:497:-36.0933,0,-37.1826	1/1:31:0,31:0:0:31:1056:-94.5792,-9.33193,0	1/1:126:0,126:0:0:126:4471:-400.776,-37.9298,0	0/1:45:20,25:20:720:25:900:-67.5061,0,-51.5824	1/1:154:0,154:0:0:154:5540:-491.703,-46.3586,0	1/1:76:0,76:0:0:76:2728:-244.426,-22.8783,0	1/1:102:0,102:0:0:102:3611:-324.339,-30.7051,0	1/1:52:0,52:0:0:52:1872:-168.336,-15.6536,0	1/1:13:0,13:0:0:13:453:-40.9418,-3.91339,0	1/1:47:0,47:0:0:47:1684:-150.875,-14.1484,0	0/1:70:41,29:41:1453:29:1040:-72.5539,0,-109.985	1/1:69:0,69:0:0:69:2480:-222.507,-20.7711,0	1/1:37:0,37:0:0:37:1298:-116.387,-11.1381,0	1/1:25:0,25:0:0:25:900:-80.7202,-7.52575,0	0/1:9:4,5:4:144:5:180:-13.5115,0,-10.6043	1/1:61:0,61:0:0:61:2181:-194.765,-18.3628,0	0/1:9:6,3:6:216:3:108:-7.35161,0,-17.0812	1/1:39:0,39:0:0:39:1385:-124.438,-11.7402,0	1/1:36:0,36:0:0:36:1292:-115.671,-10.8371,0	1/1:34:0,34:0:0:34:1224:-108.147,-10.235,0	0/1:408:366,42:366:13118:42:1512:-12.0223,0,-1056.83	0/1:21:18,3:18:644:3:108:-3.44582,0,-51.9552	1/1:91:0,91:0:0:91:3276:-293.253,-27.3937,0	1/1:36:0,36:0:0:36:1296:-116.449,-10.8371,0
chr02	13644897	.	G	T	17289.7	PASS	AB=0.519916;ABP=9.5839;AC=31;AF=0.164894;AN=188;AO=1013;CIGAR=1X;DP=7167;DPB=7167;DPRA=0.907044;EPP=2150.91;EPPR=13229.7;GTI=2;LEN=1;MEANALT=1.05405;MQM=59.9467;MQMR=59.9902;NS=94;NUMALT=1;ODDS=1.38183;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36244;QR=219138;RO=6147;RPL=6;RPP=2150.91;RPPR=13229.7;RPR=1007;RUN=1;SAF=0;SAP=2202.71;SAR=1013;SRF=0;SRP=13351.1;SRR=6147;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:66:65,1:65:2328:1:36:0,-16.2697,-206.182	0/0:99:99,0:99:3539:0:0:0,-29.802,-318.719	0/0:159:159,0:159:5679:0:0:0,-47.8638,-511.23	0/1:28:10,18:10:360:18:648:-50.223,0,-24.3155	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/0:143:142,1:142:5052:1:36:0,-39.449,-451.228	0/0:79:78,0:78:2788:0:0:0,-23.4803,-250.798	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:110:110,0:110:3899:0:0:0,-33.1133,-351.101	0/0:72:72,0:72:2525:0:0:0,-21.6742,-227.497	0/1:66:24,42:24:845:42:1512:-116.507,0,-56.4991	0/1:52:22,30:22:783:30:1080:-81.8597,0,-55.1394	0/1:69:27,42:27:963:42:1506:-115.063,0,-66.2149	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:31:13,18:13:464:18:644:-48.9587,0,-32.7656	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:94:49,45:49:1760:45:1609:-116.802,0,-130.387	0/1:134:57,77:57:2023:77:2733:-205.874,0,-142.004	0/0:95:95,0:95:3407:0:0:0,-28.5978,-306.843	0/0:138:138,0:138:4901:0:0:0,-41.5421,-441.244	0/1:65:33,32:33:1171:32:1144:-83.7026,0,-86.1297	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/0:215:215,0:215:7646:0:0:0,-64.7214,-688.179	0/0:136:135,0:135:4815:0:0:0,-40.639,-433.147	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:159:158,1:158:5647:1:23:0,-45.615,-506.102	0/0:113:113,0:113:4027:0:0:0,-34.0164,-362.62	0/1:110:44,66:44:1565:66:2342:-177.924,0,-108.026	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/0:8:7,0:7:252:0:0:0,-2.10721,-22.6691	0/0:205:205,0:205:7330:0:0:0,-61.7111,-659.747	0/0:128:128,0:128:4573:0:0:0,-38.5318,-411.734	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:98:97,0:97:3472:0:0:0,-29.1999,-312.332	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:112:112,0:112:3990:0:0:0,-33.7154,-359.285	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/1:65:33,32:33:1134:32:1144:-83.7026,0,-82.7912	0/0:103:103,0:103:3675:0:0:0,-31.0061,-330.954	0/1:77:40,37:40:1428:37:1313:-95.2904,0,-105.638	0/0:168:168,0:168:5972:0:0:0,-50.573,-537.589	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.213	0/0:126:126,0:126:4499:0:0:0,-37.9298,-405.079	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/0:91:91,0:91:3223:0:0:0,-27.3937,-290.291	0/0:80:80,0:80:2858:0:0:0,-24.0824,-257.457	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:111:56,55:56:2008:55:1980:-145.059,0,-147.579	0/0:31:31,0:31:1087:0:0:0,-9.33193,-98.1384	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/0:59:59,0:59:2090:0:0:0,-17.7608,-188.369	0/1:104:55,49:55:1952:49:1756:-127.017,0,-144.646	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:165:165,0:165:5899:0:0:0,-49.6699,-531.02	0/1:190:92,97:92:3277:97:3481:-256.246,0,-237.895	0/0:49:48,1:48:1709:1:36:0,-11.1522,-150.496	0/0:78:78,0:78:2745:0:0:0,-23.4803,-247.29	0/1:184:100,84:100:3592:84:3012:-215.921,0,-268.096	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/0:32:32,0:32:1128:0:0:0,-9.63296,-101.826	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:49:24,25:24:864:25:900:-66.5705,0,-63.3321	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:74:74,0:74:2645:0:0:0,-22.2762,-238.295	0/1:85:46,39:46:1652:39:1392:-99.9915,0,-123.381	0/0:153:153,0:153:5468:0:0:0,-46.0576,-492.249	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.008	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.249	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:73:70,1:70:2512:1:36:0,-18.1347,-222.734	0/1:85:55,30:55:1963:30:1080:-71.9257,0,-151.357	0/0:163:157,6:157:5607:6:201:0,-30.6524,-486.337	0/0:79:79,0:79:2807:0:0:0,-23.7814,-252.868	0/0:64:64,0:64:2286:0:0:0,-19.2659,-206	0/1:36:23,13:23:819:13:468:-31.6226,0,-63.1945	0/0:124:124,0:124:4383:0:0:0,-37.3277,-394.641	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/0:65:65,0:65:2261:0:0:0,-19.5669,-203.748	0/0:75:75,0:75:2681:0:0:0,-22.5772,-241.533	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/1:103:44,59:44:1563:59:2112:-159.342,0,-109.955	0/1:56:22,34:22:792:34:1224:-93.6094,0,-54.748	0/0:131:131,0:131:4661:0:0:0,-39.4349,-419.653	0/0:86:85,1:85:3048:1:36:0,-22.2903,-270.951
chr02	13644905	.	T	C	134404	PASS	AB=0.474774;ABP=13.4179;AC=157;AF=0.835106;AN=188;AO=6059;CIGAR=1X;DP=7063;DPB=7063;DPRA=8.42772;EPP=13047.3;EPPR=2101.35;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.9837;MQMR=59.995;NS=94;NUMALT=1;ODDS=3.85521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=216065;QR=35944;RO=1002;RPL=6046;RPP=13047.3;RPPR=2101.35;RPR=13;RUN=1;SAF=0;SAP=13160;SAR=6059;SRF=0;SRP=2178.83;SRR=1002;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:95:0,95:0:0:95:3396:-305.855,-28.5979,0	1/1:153:0,153:0:0:153:5459:-491.438,-46.0576,0	0/1:29:19,10:19:684:10:360:-24.0144,0,-53.1605	0/1:20:16,4:16:572:4:144:-7.29302,0,-45.7928	1/1:71:0,71:0:0:71:2513:-226.421,-21.3731,0	1/1:144:1,143:1:36:143:5093:-454.918,-39.75,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:79:1,78:1:36:78:2759:-244.682,-20.1831,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:106:0,106:0:0:106:3763:-338.869,-31.9092,0	1/1:71:0,71:0:0:71:2518:-226.872,-21.3731,0	0/1:65:41,24:41:1461:24:852:-57.4334,0,-112.217	0/1:50:31,19:31:1108:19:680:-46.4777,0,-84.9795	0/1:68:41,27:41:1467:27:968:-66.9673,0,-111.855	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:31:18,13:18:644:13:464:-32.7656,0,-48.9587	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:91:44,47:44:1584:47:1675:-123.643,0,-115.458	0/1:129:77,52:77:2760:52:1837:-126.776,0,-209.809	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	1/1:139:0,139:0:0:139:4946:-445.291,-41.8432,0	0/1:63:30,33:30:1076:33:1171:-86.7318,0,-78.188	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	1/1:215:0,215:0:0:215:7678:-691.056,-64.7215,0	1/1:139:0,139:0:0:139:4949:-445.558,-41.8432,0	1/1:28:0,28:0:0:28:995:-89.864,-8.42884,0	1/1:153:0,153:0:0:153:5471:-492.518,-46.0576,0	1/1:110:0,110:0:0:110:3912:-352.273,-33.1133,0	0/1:109:66,43:66:2364:43:1542:-106.261,0,-180.206	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:14:0,14:0:0:14:489:-44.3389,-4.21442,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:198:0,198:0:0:198:7103:-639.326,-59.6039,0	1/1:129:0,129:0:0:129:4586:-412.907,-38.8329,0	0/1:28:17,11:17:612:11:388:-26.8285,0,-46.9846	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:97:0,97:0:0:97:3459:-311.523,-29.1999,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:111:0,110:0:0:110:3928:-353.348,-33.1133,0	1/1:51:0,51:0:0:51:1827:-164.71,-15.3525,0	0/1:66:33,33:33:1188:33:1182:-86.8203,0,-87.3606	1/1:102:0,102:0:0:102:3611:-325.195,-30.7051,0	0/1:79:38,41:38:1356:41:1450:-107.014,0,-98.5591	1/1:170:0,169:0:0:169:6002:-539.927,-50.8741,0	1/1:89:0,89:0:0:89:3187:-287.053,-26.7917,0	1/1:125:0,125:0:0:125:4434:-399.231,-37.6288,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	1/1:90:0,90:0:0:90:3194:-287.684,-27.0927,0	1/1:76:0,76:0:0:76:2719:-244.953,-22.8783,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:108:54,54:54:1940:54:1940:-142.365,0,-142.363	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:103:49,54:49:1760:54:1908:-140.99,0,-127.678	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:160:0,160:0:0:160:5699:-513.032,-48.1648,0	0/1:189:98,91:98:3524:91:3251:-235.916,0,-260.474	1/1:48:1,47:1:36:47:1683:-148.158,-10.8512,0	1/1:78:0,78:0:0:78:2763:-248.913,-23.4803,0	0/1:182:83,99:83:2972:99:3519:-262.133,0,-212.925	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:29:0,29:0:0:29:1031:-93.1033,-8.72987,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:46:23,23:23:828:23:803:-58.7395,0,-60.9967	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:75:0,75:0:0:75:2687:-242.075,-22.5773,0	0/1:84:38,46:38:1364:46:1636:-122.242,0,-97.7742	1/1:151:0,151:0:0:151:5352:-481.814,-45.4555,0	1/1:94:0,94:0:0:94:3352:-301.898,-28.2968,0	1/1:88:0,88:0:0:88:3125:-281.285,-26.4906,0	1/1:72:0,72:0:0:72:2572:-231.73,-21.6742,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:73:1,72:1:36:72:2580:-228.851,-18.3769,0	0/1:84:31,53:31:1112:53:1871:-143.382,0,-75.1048	1/1:156:0,156:0:0:156:5570:-501.422,-46.9607,0	1/1:77:0,77:0:0:77:2747:-247.472,-23.1793,0	1/1:65:0,65:0:0:65:2323:-209.33,-19.567,0	0/1:35:12,23:12:432:23:828:-64.3081,0,-28.6851	1/1:125:0,125:0:0:125:4442:-399.951,-37.6288,0	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	0/1:100:59,41:59:2120:41:1472:-102.673,0,-160.965	0/1:57:35,22:35:1260:22:792:-54.447,0,-96.5468	1/1:129:0,129:0:0:129:4616:-415.604,-38.8329,0	1/1:86:0,86:0:0:86:3050:-274.73,-25.8886,0
chr02	13644950	.	G	A	56175.8	PASS	AB=0.530928;ABP=9.45756;AC=155;AF=0.824468;AN=188;AO=2591;CIGAR=1X;DP=2957;DPB=2957;DPRA=32.1196;EPP=5629.3;EPPR=789.107;GTI=9;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=0.847706;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91249;QR=12988;RO=366;RPL=0;RPP=5629.3;RPPR=789.107;RPR=2591;RUN=1;SAF=2591;SAP=5629.3;SAR=0;SRF=366;SRP=797.769;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:61:0,61:0:0:61:2137:-192.594,-18.3628,0	1/1:65:0,65:0:0:65:2289:-206.269,-19.567,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:50:0,50:0:0:50:1743:-157.148,-15.0515,0	1/1:45:0,45:0:0:45:1565:-141.136,-13.5464,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:46:0,46:0:0:46:1614:-145.545,-13.8474,0	1/1:11:0,11:0:0:11:377:-34.2579,-3.31133,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:20:0,20:0:0:20:704:-63.6845,-6.0206,0	0/1:19:13,6:13:449:6:212:-13.7052,0,-35.0179	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:18:14,4:14:489:4:140:-7.52604,0,-38.9204	1/1:15:0,15:0:0:15:531:-48.1225,-4.51545,0	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:71:32,39:32:1114:39:1396:-104.566,0,-79.19	0/1:50:21,29:21:756:29:1006:-75.7951,0,-53.3157	1/1:17:0,17:0:0:17:589:-53.3333,-5.11751,0	1/1:23:0,23:0:0:23:768:-69.4241,-6.92369,0	0/1:26:15,11:15:540:11:386:-27.249,0,-41.1098	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:113:0,113:0:0:113:3976:-358.03,-34.0164,0	1/1:67:0,67:0:0:67:2343:-211.126,-20.169,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:107:0,107:0:0:107:3760:-338.599,-32.2102,0	1/1:53:0,53:0:0:53:1859:-167.585,-15.9546,0	0/1:33:10,23:10:360:23:820:-64.1885,0,-22.8103	1/1:5:0,5:0:0:5:172:-15.8174,-1.50515,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	0/1:20:14,6:14:496:6:216:-13.7699,0,-38.9537	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:43:0,43:0:0:43:1491:-134.477,-12.9443,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:14:0,14:0:0:14:489:-44.3389,-4.21442,0	0/1:26:15,11:15:536:11:396:-28.156,0,-40.748	1/1:37:0,37:0:0:37:1296:-116.938,-11.1381,0	0/1:37:15,22:15:532:22:752:-56.8545,0,-37.075	1/1:44:0,44:0:0:44:1501:-135.372,-13.2453,0	1/1:44:0,44:0:0:44:1546:-139.428,-13.2453,0	1/1:37:0,37:0:0:37:1298:-117.117,-11.1381,0	1/1:89:0,89:0:0:89:3129:-281.836,-26.7917,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:53:0,53:0:0:53:1868:-168.397,-15.9546,0	1/1:19:0,19:0:0:19:646:-58.4552,-5.71957,0	0/1:4:1,3:1:36:3:93:-7.47261,0,-2.39415	0/1:41:22,19:22:784:19:669:-48.1917,0,-58.5417	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:4:2,2:2:72:2:57:-4.20919,0,-5.6326	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:47:23,24:23:824:24:849:-62.5794,0,-60.3349	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:69:0,69:0:0:69:2430:-218.953,-20.7711,0	0/1:60:33,27:33:1143:27:972:-69.7361,0,-85.1077	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	1/1:26:0,26:0:0:26:902:-81.4903,-7.82678,0	0/1:50:10,40:10:356:40:1432:-114.126,0,-17.3297	1/1:68:0,68:0:0:68:2346:-211.395,-20.47,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:26:13,13:13:468:13:453:-33.2728,0,-34.6329	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	1/1:85:0,85:0:0:85:2987:-269.06,-25.5876,0	0/1:32:15,17:15:536:17:593:-44.0618,0,-38.9419	1/1:44:0,44:0:0:44:1552:-139.969,-13.2453,0	1/1:47:0,47:0:0:47:1661:-149.776,-14.1484,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/1:31:3,28:3:108:28:1000:-80.9834,0,-0.74324	0/1:31:17,14:17:597:14:485:-34.645,0,-44.7242	1/1:57:0,57:0:0:57:2028:-182.793,-17.1587,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:19:7,12:7:252:12:428:-33.1392,0,-17.3094	1/1:23:0,23:0:0:23:808:-73.0396,-6.92369,0	1/1:20:0,20:0:0:20:697:-63.0507,-6.0206,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	0/1:49:26,23:26:936:23:798:-57.3867,0,-69.809	0/1:25:15,10:15:528:10:356:-24.8555,0,-40.3256	1/1:60:0,60:0:0:60:2103:-189.534,-18.0618,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0
chr02	13817465	.	G	A	14424.8	PASS	AB=0.449751;ABP=47.0923;AC=30;AF=0.159574;AN=188;AO=915;CIGAR=1X;DP=7954;DPB=7954;DPRA=0.888819;EPP=1989.91;EPPR=15238.1;GTI=2;LEN=1;MEANALT=1.02857;MQM=59.8984;MQMR=59.9569;NS=94;NUMALT=1;ODDS=3.139;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32841;QR=251408;RO=7036;RPL=0;RPP=1989.91;RPPR=15238.1;RPR=915;RUN=1;SAF=915;SAP=1989.91;SAR=0;SRF=7036;SRP=15281.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/0:138:138,0:138:4931:0:0:0,-41.5421,-443.94	0/0:107:107,0:107:3799:0:0:0,-32.2102,-342.099	0/0:160:160,0:160:5713:0:0:0,-48.1648,-514.222	0/1:25:18,7:18:648:7:252:-15.5032,0,-51.1261	0/1:30:22,8:22:779:8:288:-17.2365,0,-61.4012	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.028	0/0:153:153,0:153:5442:0:0:0,-46.0576,-489.856	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.517	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/1:92:52,40:52:1843:40:1440:-102.198,0,-138.454	0/1:54:27,27:27:968:27:972:-71.5423,0,-71.1817	0/1:52:31,21:31:1103:21:756:-52.7137,0,-83.9262	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:35:23,12:23:815:12:432:-28.6851,0,-63.1347	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:130:80,49:80:2864:49:1760:-119.491,0,-218.804	0/1:131:60,71:60:2156:71:2552:-190.49,0,-154.872	0/0:152:152,0:152:5429:0:0:0,-45.7566,-488.739	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:82:48,34:48:1708:34:1216:-85.0621,0,-129.321	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:257:257,0:257:9216:0:0:0,-77.3647,-829.407	0/0:131:131,0:131:4679:0:0:0,-39.4349,-421.272	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:189:189,0:189:6742:0:0:0,-56.8947,-606.855	0/0:234:234,0:234:8356:0:0:0,-70.441,-752.042	0/1:112:71,41:71:2548:41:1472:-99.0608,0,-195.855	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3315	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:167:167,0:167:5984:0:0:0,-50.272,-538.665	0/0:222:220,2:220:7872:2:72:0,-59.9919,-701.671	0/1:46:22,24:22:784:24:864:-64.227,0,-57.0365	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:140:140,0:140:5002:0:0:0,-42.1442,-450.327	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:109:109,0:109:3887:0:0:0,-32.8123,-350.025	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/1:30:16,14:16:568:14:489:-35.308,0,-42.421	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.427	0/1:98:64,34:64:2283:34:1224:-80.9661,0,-176.072	0/0:175:174,0:174:6183:0:0:0,-52.3792,-556.207	0/0:121:121,0:121:4311:0:0:0,-36.4246,-387.95	0/0:183:182,1:182:6504:1:36:0,-51.4902,-581.847	0/0:149:149,0:149:5340:0:0:0,-44.8535,-480.732	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	0/0:123:123,0:123:4404:0:0:0,-37.0267,-396.445	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:17:11,6:11:388:6:216:-14.673,0,-30.1399	0/1:90:42,48:42:1495:48:1720:-127.993,0,-107.751	0/0:39:38,1:38:1360:1:36:0,-8.14189,-119.102	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:118:58,60:58:2045:60:2160:-159.143,0,-148.799	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:187:187,0:187:6691:0:0:0,-56.2926,-602.266	0/1:231:136,95:136:4864:95:3406:-237.196,0,-368.376	0/0:70:67,3:67:2400:3:108:0,-10.9969,-206.182	0/0:88:87,1:87:3100:1:36:0,-22.8924,-275.542	0/1:134:68,66:68:2428:66:2365:-172.769,0,-178.429	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.34	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:116:56,60:56:1995:60:2152:-158.758,0,-144.904	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:48:20,28:20:720:28:1004:-76.2264,0,-50.6793	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.219	0/0:183:183,0:183:6544:0:0:0,-55.0885,-589.04	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.874	0/0:132:131,1:131:4666:1:36:0,-36.1377,-416.494	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:117:117,0:117:4192:0:0:0,-35.2205,-377.326	0/1:84:59,25:59:2115:25:900:-56.0345,0,-165.332	0/0:163:162,0:162:5773:0:0:0,-48.7669,-519.327	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.351	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:66:38,28:38:1348:28:998:-70.2664,0,-101.752	0/0:130:130,0:130:4656:0:0:0,-39.1339,-419.202	0/1:26:16,10:16:572:10:360:-24.9175,0,-43.9843	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:84:41,43:41:1472:43:1539:-113.497,0,-107.49	0/1:45:14,31:14:504:31:1116:-87.2053,0,-32.1517	0/0:93:93,0:93:3316:0:0:0,-27.9958,-298.637	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047
chr02	13817498	.	G	T	156176	PASS	AB=0.555055;ABP=55.6125;AC=159;AF=0.845745;AN=188;AO=7055;CIGAR=1X;DP=7959;DPB=7959;DPRA=0;EPP=15314.1;EPPR=1946.48;GTI=2;LEN=1;MEANALT=1.07447;MQM=59.9425;MQMR=59.9687;NS=94;NUMALT=1;ODDS=4.5329;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251111;QR=31819;RO=895;RPL=7047;RPP=15253.3;RPPR=1886.15;RPR=8;RUN=1;SAF=7046;SAP=15244.7;SAR=9;SRF=888;SRP=1886.15;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1482:-133.673,-12.6433,0	1/1:140:0,140:0:0:140:4966:-447.09,-42.1442,0	1/1:111:0,111:0:0:111:3960:-356.589,-33.4143,0	1/1:158:0,158:0:0:158:5647:-508.26,-47.5627,0	0/1:27:9,18:9:324:18:633:-49.1673,0,-21.378	0/1:36:13,23:13:451:23:824:-63.6462,0,-30.0827	1/1:105:0,105:0:0:105:3732:-336.078,-31.6082,0	1/1:157:0,156:0:0:156:5473:-492.31,-46.9607,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:81:0,81:0:0:81:2885:-259.885,-24.3834,0	1/1:38:0,38:0:0:38:1345:-121.262,-11.4391,0	1/1:53:0,53:0:0:53:1888:-170.198,-15.9546,0	1/1:59:0,59:0:0:59:2096:-188.91,-17.7608,0	0/1:89:39,50:39:1387:50:1765:-132.339,0,-98.3346	0/1:54:27,27:27:964:27:960:-70.4607,0,-70.8212	0/1:51:20,31:20:694:31:1108:-84.6785,0,-47.4279	1/1:61:0,60:0:0:60:2123:-190.977,-18.0618,0	0/1:35:11,24:11:396:24:851:-66.3734,0,-25.4467	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:131:48,83:48:1720:83:2967:-227.825,0,-115.651	0/1:126:68,57:68:2411:57:2028:-144.922,0,-179.377	1/1:149:0,149:0:0:149:5305:-477.584,-44.8535,0	1/1:75:0,75:0:0:75:2669:-240.454,-22.5773,0	0/1:80:33,47:33:1163:47:1679:-127.314,0,-80.8937	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	1/1:263:0,263:0:0:263:9372:-843.442,-79.1709,0	1/1:135:0,135:0:0:135:4803:-432.426,-40.6391,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:191:0,191:0:0:191:6830:-614.741,-57.4967,0	1/1:231:0,231:0:0:231:8213:-739.184,-69.5379,0	0/1:111:41,70:41:1456:70:2484:-190.397,0,-97.9216	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:14:0,14:0:0:14:500:-45.3315,-4.21442,0	1/1:9:0,9:0:0:9:309:-28.1407,-2.70927,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	1/1:166:0,164:0:0:164:5803:-522.044,-49.3689,0	1/1:225:2,223:2:72:223:7928:-706.705,-60.895,0	0/1:48:24,24:24:851:24:860:-63.2724,0,-62.459	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:139:0,139:0:0:139:4948:-445.47,-41.8432,0	1/1:21:0,21:0:0:21:728:-65.8079,-6.32163,0	1/1:111:0,111:0:0:111:3947:-355.422,-33.4143,0	1/1:59:0,59:0:0:59:2091:-188.46,-17.7608,0	0/1:29:13,16:13:451:16:572:-43.0836,0,-32.1899	1/1:87:0,87:0:0:87:3087:-278.056,-26.1896,0	0/1:99:34,65:34:1211:65:2324:-179.618,0,-79.4935	1/1:174:0,174:0:0:174:6200:-558.097,-52.3792,0	1/1:123:0,123:0:0:123:4384:-394.543,-37.0267,0	1/1:183:1,182:1:36:182:6499:-581.396,-51.4902,0	1/1:154:0,154:0:0:154:5475:-492.878,-46.3586,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:122:0,122:0:0:122:4369:-393.194,-36.7257,0	1/1:45:0,45:0:0:45:1582:-142.595,-13.5464,0	0/1:17:6,11:6:198:11:396:-30.8652,0,-13.0258	0/1:91:46,45:46:1643:45:1588:-115.814,0,-120.764	1/1:38:1,35:1:36:35:1256:-109.747,-7.59863,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	1/1:51:0,51:0:0:51:1815:-163.63,-15.3525,0	0/1:115:60,55:60:2136:55:1935:-139.806,0,-157.889	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:183:0,183:0:0:183:6536:-588.322,-55.0885,0	0/1:227:92,135:92:3296:135:4815:-365.173,0,-228.523	1/1:70:2,68:2:72:68:2429:-212.027,-14.2354,0	1/1:90:0,90:0:0:90:3215:-289.484,-27.0927,0	0/1:130:63,67:63:2260:67:2374:-174.775,0,-164.524	1/1:84:0,84:0:0:84:2978:-268.201,-25.2865,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:92:0,92:0:0:92:3266:-294.159,-27.6948,0	0/1:117:58,59:58:2045:59:2094:-153.508,0,-149.1	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	1/1:71:0,71:0:0:71:2504:-225.609,-21.3731,0	0/1:45:26,19:26:915:19:680:-47.9828,0,-69.1192	1/1:117:0,117:0:0:117:4160:-374.58,-35.2205,0	1/1:182:0,182:0:0:182:6522:-587.06,-54.7875,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:131:1,130:1:36:130:4647:-414.775,-35.8367,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:116:0,116:0:0:116:4172:-375.525,-34.9195,0	0/1:86:26,60:26:924:60:2148:-167.698,0,-57.5891	1/1:165:0,165:0:0:165:5873:-528.684,-49.67,0	1/1:80:0,80:0:0:80:2816:-253.676,-24.0824,0	1/1:42:0,41:0:0:41:1459:-131.239,-12.3422,0	0/1:63:26,37:26:919:37:1315:-99.6861,0,-64.0613	1/1:131:0,130:0:0:130:4624:-415.961,-39.1339,0	0/1:27:11,16:11:396:16:572:-43.6856,0,-27.8549	1/1:59:0,59:0:0:59:2084:-187.829,-17.7608,0	1/1:56:0,56:0:0:56:2003:-180.543,-16.8577,0	1/1:48:0,48:0:0:48:1708:-154.005,-14.4494,0	0/1:84:41,43:41:1464:43:1521:-111.895,0,-106.77	0/1:43:29,14:29:1028:14:496:-32.03,0,-79.8887	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	1/1:73:0,73:0:0:73:2589:-233.258,-21.9752,0
chr02	13949325	.	G	A	78470.5	PASS	AB=0.481579;ABP=6.37037;AC=151;AF=0.838889;AN=180;AO=3587;CIGAR=1X;DP=4182;DPB=4182;DPRA=0;EPP=7792.08;EPPR=1292.86;GTI=2;LEN=1;MEANALT=1.01111;MQM=59.7129;MQMR=59.7391;NS=90;NUMALT=1;ODDS=2.15208;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127370;QR=20777;RO=594;RPL=3587;RPP=7792.08;RPPR=1292.86;RPR=0;RUN=1;SAF=3587;SAP=7792.08;SAR=0;SRF=594;SRP=1292.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:2,18:2:72:18:640:-51.9087,0,-0.816122	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:56:0,56:0:0:56:2008:-180.959,-16.8577,0	1/1:62:0,62:0:0:62:2213:-199.429,-18.6639,0	0/1:34:19,15:19:662:15:536:-38.3389,0,-49.6628	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	1/1:73:0,73:0:0:73:2592:-233.517,-21.9752,0	1/1:45:0,45:0:0:45:1608:-145.007,-13.5464,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:36:0,36:0:0:36:1268:-114.418,-10.8371,0	1/1:41:0,41:0:0:41:1456:-131.333,-12.3422,0	1/1:38:0,38:0:0:38:1347:-121.515,-11.4391,0	1/1:37:0,37:0:0:37:1316:-118.734,-11.1381,0	0/1:35:26,9:26:905:9:320:-18.6017,0,-71.2264	0/1:29:22,7:22:768:7:252:-14.2991,0,-60.7105	0/1:31:16,15:16:576:15:536:-39.2379,0,-42.8384	1/1:47:0,47:0:0:47:1672:-150.601,-14.1484,0	0/1:29:15,14:15:532:14:495:-36.1532,0,-39.4832	1/1:31:0,31:0:0:31:1104:-99.6674,-9.33193,0	0/1:53:27,26:27:955:26:905:-65.8082,0,-70.3087	0/1:58:37,21:37:1275:21:756:-50.9071,0,-97.5854	1/1:36:0,36:0:0:36:1254:-113.158,-10.8371,0	1/1:37:0,37:0:0:37:1320:-119.099,-11.1381,0	0/1:53:33,20:33:1145:20:712:-48.4502,0,-87.3559	1/1:25:0,25:0:0:25:896:-80.9511,-7.52575,0	1/1:116:0,116:0:0:116:4115:-370.532,-34.9195,0	1/1:82:0,82:0:0:82:2906:-261.748,-24.6845,0	1/1:25:0,25:0:0:25:879:-79.4268,-7.52575,0	1/1:162:0,162:0:0:162:5757:-518.228,-48.7669,0	1/1:48:0,48:0:0:48:1709:-154.085,-14.4494,0	0/1:53:35,18:35:1239:18:640:-41.9747,0,-95.856	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:99:0,99:0:0:99:3517:-316.739,-29.802,0	1/1:88:0,88:0:0:88:3129:-281.816,-26.4906,0	0/1:50:23,27:23:803:27:960:-71.6648,0,-57.5322	.:.:.:.:.:.:.:.	1/1:85:0,85:0:0:85:3028:-272.74,-25.5876,0	1/1:27:1,26:1:36:26:920:-79.5123,-4.52954,0	1/1:42:0,42:0:0:42:1495:-134.839,-12.6433,0	1/1:37:0,37:0:0:37:1294:-116.754,-11.1381,0	0/1:43:17,26:17:600:26:915:-69.7195,0,-41.3834	1/1:45:0,45:0:0:45:1620:-146.089,-13.5464,0	0/1:51:27,24:27:951:24:837:-60.291,0,-70.5166	1/1:51:0,51:0:0:51:1815:-163.629,-15.3525,0	1/1:47:0,47:0:0:47:1665:-150.131,-14.1484,0	1/1:64:1,63:1:36:63:2241:-198.347,-15.6676,0	1/1:88:0,88:0:0:88:3130:-281.553,-26.4906,0	0/1:5:1,4:1:36:4:125:-10.0535,0,-2.08942	1/1:115:0,115:0:0:115:4116:-370.6,-34.6185,0	1/1:21:0,21:0:0:21:756:-68.3496,-6.32163,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:58:31,27:31:1080:27:948:-68.1681,0,-80.0401	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:35:0,35:0:0:35:1260:-113.696,-10.5361,0	0/1:86:36,50:36:1254:50:1779:-134.458,0,-87.2705	.:.:.:.:.:.:.:.	1/1:96:0,96:0:0:96:3419:-307.837,-28.8989,0	0/1:84:43,41:43:1512:41:1456:-106.012,0,-111.081	1/1:23:1,22:1:36:22:792:-68.0074,-3.32542,0	1/1:32:0,32:0:0:32:1127:-101.737,-9.63296,0	0/1:56:25,31:25:882:31:1088:-81.3695,0,-62.8327	1/1:51:0,51:0:0:51:1810:-163.18,-15.3525,0	1/1:18:0,18:0:0:18:635:-57.4723,-5.41854,0	1/1:26:0,26:0:0:26:913:-82.4834,-7.82678,0	0/1:48:18,30:18:626:30:1076:-82.7034,0,-42.2127	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:53:0,53:0:0:53:1878:-169.284,-15.9546,0	0/1:35:17,18:17:580:18:640:-47.3851,0,-41.9833	1/1:70:0,70:0:0:70:2452:-220.888,-21.0721,0	1/1:61:0,61:0:0:61:2176:-196.103,-18.3628,0	1/1:56:0,56:0:0:56:1986:-179.005,-16.8577,0	1/1:45:0,45:0:0:45:1608:-145.002,-13.5464,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:81:0,81:0:0:81:2838:-255.659,-24.3834,0	0/1:31:12,19:12:420:19:676:-51.8361,0,-28.8021	1/1:70:0,70:0:0:70:2478:-223.266,-21.0721,0	1/1:66:1,65:1:36:65:2332:-206.535,-16.2697,0	1/1:36:0,36:0:0:36:1273:-114.868,-10.8371,0	0/1:32:16,16:16:559:16:565:-41.0514,0,-41.0046	1/1:69:0,69:0:0:69:2435:-219.401,-20.7711,0	0/1:25:13,12:13:451:12:420:-30.6083,0,-33.3869	1/1:46:0,46:0:0:46:1636:-147.506,-13.8474,0	1/1:30:0,30:0:0:30:1051:-94.881,-9.0309,0	1/1:34:0,34:0:0:34:1224:-110.272,-10.235,0	0/1:73:38,35:38:1303:35:1234:-89.3471,0,-95.5838	0/1:33:23,9:23:803:9:315:-18.6956,0,-62.5962	1/1:44:0,44:0:0:44:1570:-141.59,-13.2453,0	1/1:59:0,59:0:0:59:2073:-186.835,-17.7608,0
chr02	13949340	.	T	C	9589.67	PASS	AB=0.524229;ABP=8.7977;AC=29;AF=0.161111;AN=180;AO=600;CIGAR=1X;DP=4186;DPB=4186;DPRA=0.872893;EPP=1305.89;EPPR=7787.74;GTI=2;LEN=1;MEANALT=1.02941;MQM=59.6867;MQMR=59.7397;NS=90;NUMALT=1;ODDS=2.8784;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21013;QR=127269;RO=3585;RPL=600;RPP=1305.89;RPPR=7787.74;RPR=0;RUN=1;SAF=600;SAP=1305.89;SAR=0;SRF=3585;SRP=7787.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:19,2:19:675:2:72:-0.515093,0,-54.7553	0/0:78:78,0:78:2774:0:0:0,-23.4803,-249.901	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.091	0/0:65:65,0:65:2287:0:0:0,-19.5669,-206.084	0/1:32:14,18:14:504:18:639:-48.2007,0,-36.0642	0/1:19:6,13:6:216:13:447:-34.8381,0,-14.0709	0/0:73:73,0:73:2580:0:0:0,-21.9752,-232.318	0/0:42:41,1:41:1463:1:27:0,-9.94395,-129.266	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.456	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.814	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.595	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.378	0/1:34:8,26:8:275:26:911:-72.0696,0,-14.8438	0/1:30:8,22:8:288:22:763:-59.9576,0,-17.2365	0/1:31:14,17:14:504:17:595:-44.5401,0,-36.3615	0/0:46:46,0:46:1644:0:0:0,-13.8474,-147.928	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.734	0/1:51:25,26:25:887:26:894:-65.4148,0,-64.7956	0/1:57:19,38:19:680:38:1314:-101.391,0,-44.3705	0/0:35:35,0:35:1228:0:0:0,-10.536,-110.821	0/0:36:36,0:36:1266:0:0:0,-10.8371,-114.24	0/1:53:20,33:20:686:33:1184:-90.8733,0,-46.101	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8691	0/0:120:120,0:120:4275:0:0:0,-36.1236,-384.926	0/0:82:82,0:82:2926:0:0:0,-24.6845,-263.551	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/0:162:161,1:161:5690:1:36:0,-45.169,-508.53	0/0:49:49,0:49:1729:0:0:0,-14.7505,-155.884	0/1:52:18,34:18:640:34:1190:-91.7458,0,-42.2758	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0704	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.21	0/0:88:88,0:88:3138:0:0:0,-26.4906,-282.62	0/1:47:25,22:25:896:22:780:-56.3679,0,-66.8119	.:.:.:.:.:.:.:.	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.463	0/0:27:26,1:26:923:1:36:0,-4.52953,-79.7793	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.181	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.893	0/1:45:27,18:27:946:18:608:-41.4899,0,-71.9034	0/0:48:48,0:48:1685:0:0:0,-14.4494,-151.931	0/1:53:25,28:25:887:28:977:-72.2677,0,-64.1853	0/0:54:54,0:54:1905:0:0:0,-16.2556,-171.022	0/0:48:48,0:48:1688:0:0:0,-14.4494,-152.199	0/0:63:62,1:62:2180:1:36:0,-15.3666,-192.852	0/0:88:88,0:88:3128:0:0:0,-26.4906,-280.967	0/1:5:4,1:4:144:1:32:-1.69268,0,-11.8085	0/0:121:121,0:121:4220:0:0:0,-36.4246,-379.952	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8727	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:59:26,33:26:923:33:1137:-84.8604,0,-65.6205	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:9:6,3:6:216:3:108:-7.2767,0,-17.0812	0/0:39:39,0:39:1374:0:0:0,-11.7402,-123.935	0/1:83:48,35:48:1704:35:1244:-87.2776,0,-128.529	.:.:.:.:.:.:.:.	0/0:98:98,0:98:3468:0:0:0,-29.5009,-312.325	0/1:82:38,44:38:1364:44:1548:-114.922,0,-98.3503	0/0:21:20,1:20:711:1:36:0,-2.72335,-60.7174	0/0:35:35,0:35:1235:0:0:0,-10.536,-111.453	0/1:54:29,24:29:1015:24:849:-60.4075,0,-75.3462	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.286	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.4911	0/1:47:29,18:29:1025:18:635:-43.3276,0,-78.4123	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.948	0/1:36:18,18:18:635:18:622:-45.465,0,-46.6317	0/0:71:71,0:71:2524:0:0:0,-21.3731,-226.935	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.888	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.583	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.642	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:82:82,0:82:2895:0:0:0,-24.6845,-260.779	0/1:33:20,13:20:716:13:456:-31.4392,0,-54.8337	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.395	0/0:68:68,0:68:2422:0:0:0,-20.47,-218.229	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.701	0/1:32:15,17:15:540:17:595:-44.2437,0,-39.3005	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.369	0/1:26:12,14:12:428:14:492:-36.7795,0,-31.032	0/0:42:42,0:42:1473:0:0:0,-12.6433,-132.849	0/0:30:30,0:30:1062:0:0:0,-9.0309,-95.8795	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.503	0/1:71:35,36:35:1239:36:1266:-92.8588,0,-90.4047	0/1:34:10,24:10:360:24:840:-65.6789,0,-22.5093	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/0:65:65,0:65:2281:0:0:0,-19.5669,-205.547
chr02	13951710	.	C	A	63793.4	PASS	AB=0.410784;ABP=73.5278;AC=157;AF=0.844086;AN=186;AO=2936;CIGAR=1X;DP=3550;DPB=3550;DPRA=9.63587;EPP=6378.45;EPPR=1325.44;GTI=2;LEN=1;MEANALT=1.05435;MQM=59.5075;MQMR=59.8309;NS=93;NUMALT=1;ODDS=0.231768;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104234;QR=21070;RO=609;RPL=2936;RPP=6378.45;RPPR=1325.44;RPR=0;RUN=1;SAF=2936;SAP=6378.45;SAR=0;SRF=609;SRP=1325.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1184:-106.851,-9.93399,0	1/1:15:0,15:0:0:15:532:-48.1898,-4.51545,0	1/1:23:0,23:0:0:23:824:-74.4695,-6.92369,0	1/1:83:0,83:0:0:83:2955:-266.051,-24.9855,0	0/1:30:13,17:13:421:17:612:-46.3825,0,-29.1642	0/1:27:14,13:14:488:13:451:-32.792,0,-36.1226	1/1:34:0,34:0:0:34:1207:-108.907,-10.235,0	1/1:33:0,33:0:0:33:1155:-104.255,-9.93399,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:18:0,18:0:0:18:631:-57.0971,-5.41854,0	1/1:58:0,58:0:0:58:2037:-183.598,-17.4597,0	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	0/1:31:22,9:22:780:9:320:-19.8104,0,-61.1911	0/1:37:17,19:17:587:19:680:-50.3285,0,-41.9578	0/1:35:15,20:15:513:20:716:-54.1866,0,-35.9568	1/1:13:0,13:0:0:13:459:-41.2885,-3.91339,0	0/1:25:17,8:17:589:8:284:-18.1854,0,-44.6123	1/1:14:0,14:0:0:14:504:-45.6746,-4.21442,0	0/1:70:37,33:37:1269:33:1145:-82.1432,0,-93.4225	0/1:65:26,38:26:915:38:1356:-102.712,0,-63.0401	1/1:40:0,40:0:0:40:1410:-127.117,-12.0412,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:37:28,9:28:1000:9:316:-17.6364,0,-79.1773	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:87:0,87:0:0:87:3076:-277.018,-26.1896,0	1/1:84:0,84:0:0:84:2973:-267.758,-25.2865,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:78:0,78:0:0:78:2742:-246.986,-23.4803,0	1/1:63:0,63:0:0:63:2218:-199.786,-18.9649,0	0/1:43:24,19:24:823:19:676:-48.2237,0,-61.4373	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:15:0,15:0:0:15:531:-48.0883,-4.51545,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:9:5,4:5:172:4:144:-10.6043,0,-13.1087	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:128:0,128:0:0:128:4520:-406.795,-38.5318,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:21:12,9:12:428:9:324:-23.176,0,-32.5363	.:.:.:.:.:.:.:.	1/1:36:0,36:0:0:36:1276:-115.122,-10.8371,0	1/1:14:0,14:0:0:14:504:-45.6696,-4.21442,0	1/1:43:0,43:0:0:43:1535:-138.412,-12.9443,0	1/1:25:0,25:0:0:25:874:-78.9551,-7.52575,0	0/1:36:24,12:24:817:12:428:-28.0217,0,-63.0022	1/1:40:0,40:0:0:40:1417:-127.82,-12.0412,0	0/1:37:15,22:15:527:22:773:-58.7513,0,-36.6221	1/1:58:0,58:0:0:58:2076:-187.074,-17.4597,0	1/1:43:0,43:0:0:43:1532:-138.152,-12.9443,0	1/1:37:0,37:0:0:37:1315:-118.622,-11.1381,0	1/1:55:0,55:0:0:55:1956:-176.279,-16.5567,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:21:0,21:0:0:21:733:-66.2897,-6.32163,0	1/1:20:0,20:0:0:20:711:-64.298,-6.0206,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:39:25,14:25:859:14:500:-33.5926,0,-65.8806	1/1:28:0,28:0:0:28:999:-90.1758,-8.42884,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:7:6,1:6:212:1:36:-1.4596,0,-17.3176	1/1:32:0,32:0:0:32:1140:-102.894,-9.63296,0	0/1:65:40,25:40:1395:25:887:-60.5674,0,-106.279	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:128:0,128:0:0:128:4566:-409.966,-38.5318,0	0/1:81:49,32:49:1707:32:1140:-78.5013,0,-129.529	1/1:20:1,19:1:36:19:684:-58.2637,-2.42233,0	1/1:24:0,24:0:0:24:848:-76.6397,-7.22472,0	0/1:36:24,12:24:835:12:428:-28.0217,0,-64.6295	1/1:23:0,23:0:0:23:820:-74.1207,-6.92369,0	1/1:12:0,12:0:0:12:432:-39.2203,-3.61236,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/1:27:13,14:13:439:14:485:-35.85,0,-31.7056	1/1:13:0,13:0:0:13:464:-42.0936,-3.91339,0	1/1:47:0,46:0:0:46:1636:-147.169,-13.8474,0	0/1:73:42,31:42:1441:31:1099:-77.2245,0,-108.004	1/1:61:1,60:1:36:60:2143:-189.534,-14.7646,0	1/1:76:0,76:0:0:76:2711:-244.23,-22.8783,0	1/1:36:0,36:0:0:36:1284:-115.819,-10.8371,0	1/1:44:0,44:0:0:44:1571:-141.673,-13.2453,0	1/1:9:0,9:0:0:9:320:-29.0878,-2.70927,0	1/1:26:0,26:0:0:26:904:-81.6637,-7.82678,0	0/1:46:30,16:30:1045:16:572:-37.966,0,-80.5095	1/1:84:1,83:1:36:83:2944:-261.506,-21.6882,0	1/1:47:0,47:0:0:47:1667:-150.236,-14.1484,0	1/1:23:1,22:1:36:22:776:-68.2502,-5.03216,0	0/1:18:12,6:12:416:6:216:-14.372,0,-32.3531	1/1:65:0,65:0:0:65:2312:-208.3,-19.567,0	0/1:11:9,2:9:303:2:72:-3.52539,0,-24.2845	1/1:45:0,45:0:0:45:1589:-143.244,-13.5464,0	1/1:35:0,35:0:0:35:1248:-112.588,-10.5361,0	1/1:15:0,14:0:0:14:504:-45.3301,-4.21442,0	0/1:55:32,23:32:1088:23:820:-56.0687,0,-81.663	0/1:53:46,7:46:1569:7:252:-7.07437,0,-125.54	1/1:98:2,95:2:72:95:3358:-295.563,-22.723,0	1/1:60:0,60:0:0:60:2128:-191.775,-18.0618,0
chr02	13951807	.	ACCC	ACTT,ACTC	80097.2	PASS	AB=0.390592,0.598004;ABP=148.883,120.058;AC=153,33;AF=0.822581,0.177419;AN=186;AO=3491,855;CIGAR=2M2X,2M1X1M;DP=4371;DPB=4371;DPRA=7.98352,1.00293;EPP=7583.62,1859.62;EPPR=7.35324;GTI=1;LEN=2,1;MEANALT=1.56044,2.22857;MQM=32.9788,53.9427;MQMR=60;NS=93;NUMALT=2;ODDS=2.67814;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=124039,30475;QR=72;RO=2;RPL=0,0;RPP=7583.62,1859.62;RPPR=7.35324;RPR=3491,855;RUN=1,1;SAF=0,0;SAP=7583.62,1859.62;SAR=3491,855;SRF=0;SRP=7.35324;SRR=2;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17,0:0:0:17,0:602,0:-44.3736,-5.11751,0,-44.3736,-5.11751,-44.3736	1/1:64:0,64,0:0:0:64,0:2263,0:-166.149,-19.2659,0,-166.149,-19.2659,-166.149	1/1:58:0,57,1:0:0:57,1:2012,32:-147.934,-17.1587,0,-145.385,-14.2929,-145.084	1/1:54:0,54,0:0:0:54,0:1927,0:-153.971,-16.2556,0,-153.971,-16.2556,-153.971	1/2:35:0,11,18:0:0:11,18:388,644:-78.989,-52.4348,-49.1234,-26.5568,0,-21.1383	1/2:42:0,17,25:0:0:17,25:588,896:-111.953,-73.1789,-68.0614,-39.0892,0,-31.5634	1/1:27:0,27,0:0:0:27,0:959,0:-77.0302,-8.12781,0,-77.0302,-8.12781,-77.0302	1/1:45:0,45,0:0:0:45,0:1620,0:-118.134,-13.5464,0,-118.134,-13.5464,-118.134	1/1:41:0,41,0:0:0:41,0:1450,0:-106.792,-12.3422,0,-106.792,-12.3422,-106.792	1/1:60:0,60,0:0:0:60,0:2115,0:-168.782,-18.0618,0,-168.782,-18.0618,-168.782	1/1:19:0,19,0:0:0:19,0:667,0:-50.7737,-5.71957,0,-50.7737,-5.71957,-50.7737	1/1:35:0,35,0:0:0:35,0:1258,0:-92.6197,-10.5361,0,-92.6197,-10.5361,-92.6197	1/1:39:0,39,0:0:0:39,0:1378,0:-100.605,-11.7402,0,-100.605,-11.7402,-100.605	1/2:70:0,24,46:0:0:24,46:836,1628:-189.94,-132.583,-125.358,-57.6742,0,-43.8269	1/2:27:0,9,18:0:0:9,18:309,639:-74.5207,-52.2953,-49.586,-22.5488,0,-17.1302	1/2:33:0,9,24:0:0:9,24:322,856:-92.0549,-69.8018,-67.0925,-22.5742,0,-15.3495	1/1:31:0,31,0:0:0:31,0:1090,0:-80.7056,-9.33193,0,-80.7056,-9.33193,-80.7056	1/2:26:0,13,13:0:0:13,13:466,460:-67.9283,-37.5151,-33.6017,-30.7356,0,-26.8222	1/1:11:0,11,0:0:0:11,0:396,0:-29.0276,-3.31133,0,-29.0276,-3.31133,-29.0276	1/2:75:0,22,53:0:0:22,53:788,1884:-209.657,-153.575,-146.953,-56.4101,0,-40.4555	1/2:87:0,29,58:0:0:29,58:1020,2076:-237.748,-169.185,-160.456,-68.8789,0,-51.4191	1/1:54:0,54,0:0:0:54,0:1922,0:-158.362,-16.2556,0,-158.362,-16.2556,-158.362	1/1:31:0,29,0:0:0:29,0:1010,0:-81.1474,-8.72987,0,-81.1474,-8.72987,-81.1474	1/2:65:0,36,28:0:0:36,28:1279,991:-167.888,-80.2517,-69.4146,-87.6332,0,-79.2043	1/1:30:0,30,0:0:0:30,0:1062,0:-81.8947,-9.0309,0,-81.8947,-9.0309,-81.8947	1/1:144:0,143,0:0:0:143,0:5062,0:-417.703,-43.0473,0,-417.703,-43.0473,-417.703	1/1:86:0,86,0:0:0:86,0:3090,0:-237.414,-25.8886,0,-237.414,-25.8886,-237.414	1/1:10:0,10,0:0:0:10,0:349,0:-27.22,-3.0103,0,-27.22,-3.0103,-27.22	1/1:85:0,85,0:0:0:85,0:3054,0:-248.981,-25.5876,0,-248.981,-25.5876,-248.981	1/1:82:0,81,0:0:0:81,0:2880,0:-219.49,-24.3834,0,-219.49,-24.3834,-219.49	1/2:60:0,28,32:0:0:28,32:990,1132:-163.417,-92.4877,-84.0588,-71.2619,0,-61.6289	1/1:4:0,4,0:0:0:4,0:144,0:-11.3018,-1.20412,0,-11.3018,-1.20412,-11.3018	1/1:7:0,7,0:0:0:7,0:250,0:-19.4879,-2.10721,0,-19.4879,-2.10721,-19.4879	.:.:.:.:.:.:.:.	1/2:6:0,2,4:0:0:2,4:72,139:-15.9516,-11.345,-10.7429,-4.91319,0,-3.70907	1/1:2:0,2,0:0:0:2,0:61,0:-5.01958,-0.60206,0,-5.01958,-0.60206,-5.01958	1/1:123:0,122,0:0:0:122,0:4330,0:-353.682,-36.7257,0,-353.682,-36.7257,-353.682	1/1:86:0,86,0:0:0:86,0:3021,0:-230.886,-25.8886,0,-230.886,-25.8886,-230.886	1/2:28:0,10,18:0:0:10,18:356,644:-76.3112,-52.6862,-49.6759,-23.9426,0,-18.5241	2/2:1:0,0,1:0:0:0,1:0,36:-3.59317,-3.59317,-3.59317,-0.30103,-0.30103,0	1/1:57:0,57,0:0:0:57,0:2037,0:-155.378,-17.1587,0,-155.378,-17.1587,-155.378	1/1:20:0,20,0:0:0:20,0:692,0:-53.9509,-6.0206,0,-53.9509,-6.0206,-53.9509	1/1:56:0,56,0:0:0:56,0:1957,0:-151.051,-16.8577,0,-151.051,-16.8577,-151.051	1/1:34:0,33,0:0:0:33,0:1182,0:-94.2912,-9.93399,0,-94.2912,-9.93399,-94.2912	1/2:40:0,18,22:0:0:18,22:648,788:-110.125,-64.5719,-59.1534,-45.8871,0,-39.2644	1/1:37:0,37,0:0:0:37,0:1317,0:-106.704,-11.1381,0,-106.704,-11.1381,-106.704	1/2:55:0,28,27:0:0:28,27:1006,963:-142.271,-78.0613,-69.6325,-64.531,0,-56.4032	1/1:78:0,77,0:0:0:77,0:2759,0:-220.393,-23.1793,0,-220.393,-23.1793,-220.393	1/1:61:0,60,0:0:0:60,0:2129,0:-169.308,-18.0618,0,-169.308,-18.0618,-169.308	1/1:66:0,66,0:0:0:66,0:2348,0:-186.509,-19.868,0,-186.509,-19.868,-186.509	1/1:80:0,80,0:0:0:80,0:2825,0:-231.871,-24.0824,0,-231.871,-24.0824,-231.871	1/2:7:0,4,3:0:0:4,3:144,108:-19.1524,-9.16481,-7.96069,-10.3266,0,-9.4235	1/1:38:0,38,0:0:0:38,0:1362,0:-100.515,-11.4391,0,-100.515,-11.4391,-100.515	1/1:30:0,30,0:0:0:30,0:1068,0:-88.2621,-9.0309,0,-88.2621,-9.0309,-88.2621	1/2:9:0,1,8:0:0:1,8:36,288:-25.8957,-23.5916,-23.2906,-2.60173,0,-0.193494	1/2:77:2,37,37:2:72:37,37:1328,1332:-190.233,-102.221,-96.9583,-82.7416,0,-77.4814	1/2:15:0,12,3:0:0:12,3:419,108:-39.0701,-9.16481,-5.55245,-30.255,0,-29.352	2/2:11:0,0,11:0:0:0,11:0,377:-34.1676,-34.1676,-34.1676,-3.31133,-3.31133,0	1/2:4:0,3,1:0:0:3,1:108,36:-10.9121,-3.2968,-2.39371,-7.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chr02	13951815	.	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chr02	14258367	.	CTACA	ATACA	25519.3	PASS	AB=0.486393;ABP=8.15133;AC=30;AF=0.159574;AN=188;AO=1569;CIGAR=1X4M;DP=11024;DPB=11023.2;DPRA=1.03462;EPP=3410.05;EPPR=20447.4;GTI=2;LEN=1;MEANALT=1.55;MQM=59.9669;MQMR=59.9804;NS=94;NUMALT=1;ODDS=0.0519017;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55614;QR=333508;RO=9415;RPL=0;RPP=3410.05;RPPR=20447.4;RPR=1569;RUN=1;SAF=1569;SAP=3410.05;SAR=0;SRF=9415;SRP=20447.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:27,0:27:956:0:0:0,-8.12781,-85.9958	0/0:202:201,0:201:7091:0:0:0,-60.507,-637.901	0/0:70:70,0:70:2482:0:0:0,-21.0721,-223.634	0/0:124:122,1:122:4319:1:36:0,-33.7882,-385.293	0/1:63:26,36:26:925:36:1277:-96.2076,0,-64.5448	0/1:96:45,51:45:1601:51:1764:-130.136,0,-115.48	0/0:151:151,0:151:5366:0:0:0,-45.4555,-483.076	0/0:234:234,0:234:8260:0:0:0,-70.441,-743.424	0/0:60:60,0:60:2150:0:0:0,-18.0618,-193.767	0/0:94:94,0:94:3333:0:0:0,-28.2968,-300.188	0/0:191:188,0:188:6675:0:0:0,-56.5936,-600.474	0/0:124:123,0:123:4383:0:0:0,-37.0267,-394.285	0/0:96:96,0:96:3407:0:0:0,-28.8989,-306.848	0/1:196:105,90:105:3744:90:3232:-231.771,0,-278.101	0/1:79:42,37:42:1497:37:1309:-94.3282,0,-111.244	0/1:86:38,48:38:1345:48:1701:-127.485,0,-95.4617	0/0:196:195,0:195:6937:0:0:0,-58.7008,-624.08	0/1:79:32,47:32:1133:47:1665:-126.354,0,-78.4972	0/0:111:111,0:111:3939:0:0:0,-33.4143,-354.704	0/1:157:70,86:70:2462:86:3074:-229.716,0,-174.663	0/1:143:92,51:92:3252:51:1787:-118.059,0,-249.853	0/0:110:110,0:110:3888:0:0:0,-33.1133,-350.117	0/0:69:69,0:69:2427:0:0:0,-20.7711,-218.688	0/1:86:42,44:42:1496:44:1580:-116.603,0,-109.046	0/0:43:42,0:42:1493:0:0:0,-12.6433,-134.305	0/0:338:337,1:337:11878:1:36:0,-98.1499,-1065.31	0/0:130:129,0:129:4595:0:0:0,-38.8329,-413.506	0/0:53:52,1:52:1832:1:36:0,-12.3573,-161.562	0/0:187:186,0:186:6603:0:0:0,-55.9916,-594.037	0/0:174:172,0:172:6052:0:0:0,-51.7772,-544.434	0/1:118:52,65:52:1832:65:2306:-172.217,0,-129.579	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:30:30,0:30:1074:0:0:0,-9.0309,-96.9728	0/0:10:10,0:10:353:0:0:0,-3.0103,-32.109	0/1:7:4,3:4:129:3:108:-7.96796,0,-9.82143	0/0:19:19,0:19:666:0:0:0,-5.71957,-60.2642	0/0:323:321,1:321:11396:1:36:0,-93.6932,-1021.88	0/0:155:155,0:155:5490:0:0:0,-46.6596,-494.234	0/1:176:95,80:95:3337:80:2834:-202.405,0,-247.658	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:141:140,0:140:4938:0:0:0,-42.1442,-444.217	0/0:78:78,0:78:2766:0:0:0,-23.4803,-249.183	0/0:132:132,0:132:4680:0:0:0,-39.736,-421.363	0/0:97:97,0:97:3450:0:0:0,-29.1999,-310.714	0/1:104:53,49:53:1860:49:1729:-124.824,0,-136.611	0/0:55:54,0:54:1921:0:0:0,-16.2556,-172.807	0/1:103:38,65:38:1358:65:2325:-178.502,0,-91.5146	0/0:185:181,2:181:6389:2:72:0,-48.6116,-568.273	0/0:80:80,0:80:2819:0:0:0,-24.0824,-253.951	0/0:218:218,0:218:7750:0:0:0,-65.6245,-697.539	0/0:154:154,0:154:5473:0:0:0,-46.3586,-492.701	0/1:22:18,4:18:619:4:144:-6.69096,0,-49.4096	0/0:138:137,0:137:4871:0:0:0,-41.2411,-438.185	0/0:104:104,0:104:3635:0:0:0,-31.3071,-327.357	0/1:17:8,9:8:281:9:324:-24.3883,0,-20.5131	0/1:176:97,79:97:3405:79:2779:-197.36,0,-253.688	0/0:7:7,0:7:249:0:0:0,-2.10721,-22.7555	0/1:10:8,2:8:265:2:72:-3.82642,0,-21.1636	0/1:37:24,11:24:859:11:396:-25.0869,0,-66.7362	0/0:123:123,0:123:4329:0:0:0,-37.0267,-389.791	0/1:281:149,132:149:5311:132:4631:-332.361,0,-393.539	0/0:16:15,1:15:531:1:21:0,-2.71653,-46.0232	0/0:207:207,0:207:7357:0:0:0,-62.3132,-662.183	0/1:282:167,115:167:5888:115:4033:-278.265,0,-445.146	0/0:129:126,3:126:4422:3:84:0,-30.9947,-390.32	0/0:101:101,0:101:3584:0:0:0,-30.404,-322.75	0/1:120:51,68:51:1786:68:2432:-183.022,0,-124.906	0/0:152:150,2:150:5323:2:72:0,-38.9198,-472.373	0/0:80:80,0:80:2847:0:0:0,-24.0824,-256.468	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.58	0/1:142:71,71:71:2496:71:2533:-185.473,0,-182.149	0/0:46:46,0:46:1630:0:0:0,-13.8474,-146.984	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.9	0/1:48:26,22:26:912:22:773:-55.44,0,-67.9454	0/0:174:174,0:174:6119:0:0:0,-52.3792,-550.816	0/0:177:177,0:177:6264:0:0:0,-53.2823,-563.856	0/0:116:116,0:116:4029:0:0:0,-34.9195,-362.803	0/0:200:200,0:200:7092:0:0:0,-60.206,-638.348	0/0:12:12,0:12:431:0:0:0,-3.61236,-39.1307	0/0:158:157,1:157:5591:1:36:0,-43.9645,-499.718	0/1:89:39,50:39:1394:50:1785:-134.131,0,-98.9675	0/0:167:167,0:167:5936:0:0:0,-50.272,-534.354	0/0:185:185,0:185:6507:0:0:0,-55.6905,-585.726	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.878	0/1:115:56,57:56:1997:57:1999:-145.803,0,-145.628	0/0:192:192,0:192:6861:0:0:0,-57.7978,-617.562	0/1:47:23,21:23:822:21:756:-54.7626,0,-60.701	0/0:112:112,0:112:3986:0:0:0,-33.7154,-358.931	0/0:108:106,1:106:3781:1:36:0,-28.9718,-336.891	0/0:104:104,0:104:3705:0:0:0,-31.3071,-333.652	0/1:216:116,98:116:4109:98:3501:-250.592,0,-305.288	0/1:98:35,61:35:1256:61:2192:-168.287,0,-84.087	0/0:175:175,0:175:6201:0:0:0,-52.6802,-558.195	0/0:173:172,0:172:6133:0:0:0,-51.7772,-551.713
chr02	14258400	.	C	A	204425	PASS	AB=0.508415;ABP=4.94732;AC=158;AF=0.840426;AN=188;AO=9233;CIGAR=1X;DP=10800;DPB=10800;DPRA=0;EPP=19913.5;EPPR=3379.66;GTI=1;LEN=1;MEANALT=1.08511;MQM=59.9825;MQMR=59.9564;NS=94;NUMALT=1;ODDS=1.01817;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329658;QR=55406;RO=1559;RPL=9213;RPP=19878.9;RPPR=3379.66;RPR=20;RUN=1;SAF=9229;SAP=20017.5;SAR=4;SRF=1559;SRP=3388.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:199:0,199:0:0:199:7080:-637.258,-59.905,0	1/1:68:0,68:0:0:68:2418:-217.873,-20.47,0	1/1:116:1,115:1:36:115:4128:-368.105,-31.3212,0	0/1:63:38,25:38:1364:25:888:-61.2741,0,-104.096	0/1:98:51,47:51:1803:47:1673:-121.351,0,-133.05	1/1:150:0,150:0:0:150:5368:-483.252,-45.1545,0	1/1:226:1,224:1:36:224:7978:-714.446,-64.4933,0	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	1/1:93:0,93:0:0:93:3319:-298.927,-27.9958,0	1/1:188:0,187:0:0:187:6699:-602.625,-56.2926,0	1/1:120:0,120:0:0:120:4312:-388.255,-36.1236,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	0/1:194:90,104:90:3164:104:3736:-278.04,0,-226.312	0/1:78:37,41:37:1314:41:1461:-108.304,0,-95.0799	0/1:84:49,35:49:1747:35:1243:-86.8873,0,-132.227	1/1:193:0,193:0:0:193:6912:-622.146,-58.0988,0	0/1:79:47,32:47:1672:32:1152:-80.2088,0,-126.986	1/1:111:0,111:0:0:111:3959:-356.501,-33.4143,0	0/1:155:87,68:87:3103:68:2392:-168.876,0,-232.838	0/1:142:51,91:51:1806:91:3226:-247.815,0,-120.074	1/1:106:0,106:0:0:106:3792:-341.478,-31.9092,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:85:44,41:44:1567:41:1468:-106.829,0,-115.733	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	1/1:332:0,332:0:0:332:11745:-1056.92,-99.942,0	1/1:129:0,129:0:0:129:4603:-414.435,-38.8329,0	1/1:50:0,50:0:0:50:1796:-161.921,-15.0515,0	1/1:185:0,185:0:0:185:6590:-593.18,-55.6906,0	1/1:164:0,164:0:0:164:5850:-526.606,-49.3689,0	0/1:116:63,53:63:2260:53:1865:-133.1,0,-168.743	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:314:1,313:1:36:313:11163:-1000.96,-90.9251,0	1/1:154:0,154:0:0:154:5515:-496.473,-46.3586,0	0/1:176:80,96:80:2842:96:3440:-256.823,0,-203.034	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:138:0,138:0:0:138:4932:-444.031,-41.5421,0	1/1:74:0,73:0:0:73:2616:-235.328,-21.9752,0	1/1:130:0,130:0:0:130:4654:-419.021,-39.1339,0	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0	0/1:105:51,54:51:1820:54:1905:-140.113,0,-132.471	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:103:65,38:65:2297:38:1364:-92.0546,0,-175.984	1/1:180:2,178:2:63:178:6350:-565.606,-48.2022,0	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0	1/1:214:0,214:0:0:214:7663:-689.704,-64.4204,0	1/1:150:0,150:0:0:150:5372:-483.611,-45.1545,0	0/1:21:4,17:4:144:17:604:-48.3684,0,-6.99199	1/1:134:0,133:0:0:133:4720:-424.599,-40.037,0	1/1:105:0,105:0:0:105:3757:-338.329,-31.6082,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:170:74,96:74:2615:96:3402:-255.219,0,-184.418	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:36:11,25:11:388:25:900:-70.4839,0,-24.4203	1/1:115:0,114:0:0:114:4080:-367.027,-34.3174,0	0/1:277:130,146:130:4631:146:5201:-384.786,0,-333.422	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:202:0,201:0:0:201:7154:-643.558,-60.507,0	0/1:269:109,160:109:3901:160:5729:-434.745,0,-270.305	1/1:124:3,121:3:93:121:4335:-381.648,-28.651,0	1/1:99:0,99:0:0:99:3529:-317.749,-29.802,0	0/1:117:66,51:66:2338:51:1832:-129.936,0,-175.458	1/1:148:2,146:2:72:146:5221:-463.19,-37.7157,0	1/1:79:0,79:0:0:79:2804:-252.599,-23.7814,0	1/1:65:0,65:0:0:65:2321:-209.148,-19.567,0	0/1:142:71,71:71:2517:71:2533:-185.473,0,-184.035	1/1:46:0,46:0:0:46:1631:-147.032,-13.8474,0	1/1:59:0,59:0:0:59:2116:-190.708,-17.7608,0	0/1:48:22,26:22:788:26:924:-69.0282,0,-56.7954	1/1:169:0,169:0:0:169:6010:-541.004,-50.8741,0	1/1:173:0,173:0:0:173:6164:-554.859,-52.0782,0	1/1:112:0,112:0:0:112:3980:-358.381,-33.7154,0	1/1:194:0,194:0:0:194:6919:-622.773,-58.3998,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:156:1,155:1:36:155:5548:-495.846,-43.3624,0	0/1:87:49,38:49:1751:38:1332:-93.9869,0,-131.676	1/1:166:0,166:0:0:166:5913:-532.279,-49.971,0	1/1:182:1,181:1:36:181:6465:-578.338,-51.1892,0	1/1:78:0,78:0:0:78:2804:-252.582,-23.4803,0	0/1:113:58,55:58:2030:55:1968:-143.379,0,-148.953	1/1:189:0,188:0:0:188:6729:-605.323,-56.5936,0	0/1:47:24,23:24:860:23:828:-60.6957,0,-63.5711	1/1:112:0,112:0:0:112:4028:-362.707,-33.7154,0	1/1:106:0,106:0:0:106:3797:-341.926,-31.9092,0	1/1:104:0,104:0:0:104:3724:-335.36,-31.3071,0	0/1:214:99,115:99:3535:115:4120:-306.559,0,-253.939	0/1:96:61,35:61:2165:35:1260:-84.8066,0,-166.216	1/1:167:0,167:0:0:167:5958:-536.329,-50.272,0	1/1:169:0,169:0:0:169:6058:-545.322,-50.8741,0
chr02	14258418	.	C	G	54537.7	PASS	AB=0.4881;ABP=9.21205;AC=30;AF=0.159574;AN=188;AO=2473;CIGAR=1X;DP=18069;DPB=18069;DPRA=1.04695;EPP=5364.38;EPPR=33704.4;GTI=1;LEN=1;MEANALT=1;MQM=59.9721;MQMR=59.9884;NS=94;NUMALT=1;ODDS=2.42527;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87570;QR=554254;RO=15588;RPL=1554;RPP=357.071;RPPR=1231.8;RPR=919;RUN=1;SAF=1555;SAP=359.305;SAR=918;SRF=9286;SRP=1243.41;SRR=6302;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2313:0:0:0,-19.5669,-208.429	0/0:274:274,0:274:9714:0:0:0,-82.4822,-874.214	0/0:239:239,0:239:8527:0:0:0,-71.9462,-767.433	0/0:273:272,1:272:9625:1:36:0,-78.5829,-862.612	0/1:95:40,55:40:1431:55:1959:-147.987,0,-100.489	0/1:138:73,65:73:2615:65:2320:-167.518,0,-194.055	0/0:253:253,0:253:9008:0:0:0,-76.1606,-810.701	0/0:329:328,1:328:11706:1:36:0,-95.4406,-1049.81	0/0:155:154,0:154:5488:0:0:0,-46.3586,-493.69	0/0:172:172,0:172:6135:0:0:0,-51.7772,-552.247	0/0:241:241,0:241:8542:0:0:0,-72.5482,-768.784	0/0:204:204,0:204:7264:0:0:0,-61.4101,-653.815	0/0:159:159,0:159:5662:0:0:0,-47.8638,-509.702	0/1:250:129,121:129:4632:121:4300:-311.651,0,-341.784	0/1:142:82,60:82:2922:60:2102:-146.7,0,-220.468	0/1:135:65,70:65:2324:70:2441:-179.304,0,-168.781	0/0:284:284,0:284:10112:0:0:0,-85.4925,-910.016	0/1:120:46,74:46:1622:74:2647:-202.352,0,-110.144	0/0:146:146,0:146:5189:0:0:0,-43.9504,-467.152	0/1:256:127,129:127:4493:129:4591:-336.293,0,-327.476	0/1:297:122,175:122:4335:175:6141:-463.393,0,-300.912	0/0:193:193,0:193:6852:0:0:0,-58.0988,-616.749	0/0:139:138,0:138:4911:0:0:0,-41.5421,-441.781	0/1:205:115,90:115:4090:90:3189:-225.523,0,-306.576	0/0:109:109,0:109:3872:0:0:0,-32.8123,-348.675	0/0:591:591,0:591:21027:0:0:0,-177.909,-1891.91	0/0:249:249,0:249:8862:0:0:0,-74.9565,-797.569	0/0:94:94,0:94:3341:0:0:0,-28.2968,-300.906	0/0:299:299,0:299:10635:0:0:0,-90.008,-957.065	0/0:236:234,0:234:8318:0:0:0,-70.441,-748.265	0/1:185:82,103:82:2936:103:3658:-273.735,0,-208.356	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:580:579,1:579:20555:1:36:0,-170.999,-1845.83	0/0:289:288,0:288:10265:0:0:0,-86.6966,-923.416	0/1:234:135,99:135:4805:99:3510:-245.671,0,-362.158	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:235:235,0:235:8321:0:0:0,-70.742,-748.904	0/0:106:106,0:106:3759:0:0:0,-31.9092,-338.51	0/0:241:241,0:241:8548:0:0:0,-72.5482,-769.325	0/0:207:207,0:207:7336:0:0:0,-62.3132,-660.294	0/1:169:79,90:79:2792:90:3158:-233.57,0,-200.645	0/0:154:154,0:154:5491:0:0:0,-46.3586,-494.319	0/1:187:92,95:92:3264:95:3387:-248.753,0,-237.688	0/0:278:276,2:276:9781:2:72:0,-76.8496,-873.407	0/0:161:161,0:161:5695:0:0:0,-48.4658,-512.671	0/0:307:307,0:307:10935:0:0:0,-92.4162,-984.05	0/0:307:307,0:307:10907:0:0:0,-92.4162,-981.533	0/1:23:17,6:17:599:6:207:-12.0432,0,-47.3144	0/0:223:222,0:222:7894:0:0:0,-66.8287,-710.13	0/0:129:129,0:129:4568:0:0:0,-38.8329,-411.286	0/1:19:9,10:9:320:10:356:-26.6617,0,-23.4228	0/1:275:154,121:154:5492:121:4269:-301.605,0,-411.624	0/0:30:30,0:30:1047:0:0:0,-9.0309,-94.5392	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:52:33,19:33:1176:19:680:-45.8756,0,-90.4942	0/0:157:157,0:157:5585:0:0:0,-47.2617,-502.775	0/1:405:223,182:223:7964:182:6445:-458.141,0,-594.866	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:312:312,0:312:11110:0:0:0,-93.9214,-999.795	0/1:409:245,164:245:8709:164:5829:-401.603,0,-660.684	0/0:185:182,3:182:6463:3:108:0,-45.6154,-571.682	0/0:130:130,0:130:4634:0:0:0,-39.1339,-417.194	0/1:233:97,136:97:3434:136:4783:-360.49,0,-239.131	0/0:266:264,2:264:9382:2:72:0,-73.2373,-837.51	0/0:113:113,0:113:4035:0:0:0,-34.0164,-363.338	0/0:162:162,0:162:5779:0:0:0,-48.7669,-520.223	0/1:220:124,96:124:4423:96:3387:-238.82,0,-332.016	0/0:51:50,0:50:1777:0:0:0,-15.0515,-159.806	0/0:165:165,0:165:5861:0:0:0,-49.6699,-527.605	0/1:95:44,51:44:1539:51:1808:-134.404,0,-110.2	0/0:335:334,1:334:11816:1:36:0,-97.2468,-1059.71	0/0:268:268,0:268:9513:0:0:0,-80.676,-856.13	0/0:188:188,0:188:6665:0:0:0,-56.5936,-599.923	0/0:307:307,0:307:10979:0:0:0,-92.4162,-988.004	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:217:216,1:216:7708:1:36:0,-61.7252,-690.156	0/1:117:56,61:56:1980:61:2184:-161.597,0,-143.252	0/0:319:319,0:319:11350:0:0:0,-96.0286,-1021.38	0/0:297:297,0:297:10523:0:0:0,-89.4059,-946.993	0/0:147:147,0:147:5243:0:0:0,-44.2514,-472.006	0/1:199:106,93:106:3788:93:3297:-237.044,0,-281.21	0/0:340:340,0:340:12047:0:0:0,-102.35,-1084.09	0/1:93:50,43:50:1792:43:1528:-109.816,0,-133.567	0/0:209:209,0:209:7455:0:0:0,-62.9153,-670.997	0/0:198:197,0:197:7000:0:0:0,-59.3029,-629.705	0/0:122:122,0:122:4328:0:0:0,-36.7257,-389.697	0/1:289:158,131:158:5625:131:4623:-329.236,0,-419.371	0/1:177:66,111:66:2356:111:3943:-301.782,0,-159.017	0/0:203:203,0:203:7221:0:0:0,-61.1091,-649.946	0/0:285:285,0:285:10118:0:0:0,-85.7935,-910.561
chr02	14264162	.	A	G	17590.1	PASS	AB=0.460159;ABP=36.0589;AC=30;AF=0.159574;AN=188;AO=1123;CIGAR=1X;DP=9929;DPB=9929;DPRA=0.843643;EPP=2441.57;EPPR=18992.8;GTI=3;LEN=1;MEANALT=1.02439;MQM=59.4123;MQMR=59.2591;NS=94;NUMALT=1;ODDS=2.83518;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40190;QR=314694;RO=8805;RPL=1123;RPP=2441.57;RPPR=18992.8;RPR=0;RUN=1;SAF=0;SAP=2441.57;SAR=1123;SRF=0;SRP=19122.8;SRR=8805;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:130:130,0:130:4655:0:0:0,-39.1339,-418.644	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.971	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.718	0/0:203:203,0:203:7243:0:0:0,-61.1091,-651.523	0/1:72:39,33:39:1400:33:1173:-84.1717,0,-104.582	0/1:71:32,39:32:1140:39:1396:-104.452,0,-81.5279	0/0:149:148,1:148:5289:1:36:0,-41.2552,-471.938	0/0:72:72,0:72:2561:0:0:0,-21.6742,-230.704	0/0:170:170,0:170:6081:0:0:0,-51.1751,-547.311	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.555	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.563	0/0:144:144,0:144:5176:0:0:0,-43.3483,-465.703	0/0:98:98,0:98:3508:0:0:0,-29.5009,-314.537	0/1:76:48,28:48:1728:28:1008:-68.1155,0,-132.871	0/1:85:46,39:46:1652:39:1392:-99.9621,0,-123.223	0/1:65:37,28:37:1324:28:999:-70.6576,0,-99.8739	0/0:44:43,1:43:1525:1:36:0,-9.65609,-133.943	0/1:40:25,15:25:900:15:533:-36.2396,0,-69.2635	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.075	0/1:218:114,104:114:4085:104:3717:-268.98,0,-302.191	0/1:188:99,89:99:3564:89:3196:-231.176,0,-264.083	0/0:104:104,0:104:3717:0:0:0,-31.3071,-334.689	0/0:137:137,0:137:4848:0:0:0,-41.2411,-435.446	0/1:58:24,34:24:841:34:1220:-92.6006,0,-58.4017	0/0:77:76,1:76:2694:1:36:0,-19.5928,-239.073	0/0:361:361,0:361:12877:0:0:0,-108.672,-1158.3	0/0:312:312,0:312:11105:0:0:0,-93.9214,-999.167	0/0:48:48,0:48:1724:0:0:0,-14.4494,-152.686	0/0:325:322,3:322:11541:3:108:0,-87.762,-1027.86	0/0:160:158,1:158:5660:1:36:0,-44.6359,-503.981	0/1:152:67,85:67:2385:85:3048:-228.729,0,-168.859	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.057	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1546	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1367	0/0:339:339,0:339:12161:0:0:0,-102.049,-1093.92	0/0:107:107,0:107:3821:0:0:0,-32.2102,-344.018	0/1:57:37,20:37:1328:20:703:-46.4063,0,-102.577	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:119:119,0:119:4276:0:0:0,-35.8226,-384.931	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9347	0/0:240:240,0:240:8559:0:0:0,-72.2472,-769.749	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.617	0/1:74:41,33:41:1468:33:1175:-83.7807,0,-110.112	0/0:128:128,0:128:4566:0:0:0,-38.5318,-411.021	0/1:65:32,33:32:1148:33:1184:-87.2445,0,-83.9766	0/0:203:203,0:203:7244:0:0:0,-61.1091,-651.502	0/0:136:136,0:136:4843:0:0:0,-40.9401,-435.952	0/0:77:77,0:77:2756:0:0:0,-23.1793,-247.461	0/0:194:194,0:194:6941:0:0:0,-58.3998,-624.384	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:94:94,0:94:3331:0:0:0,-28.2968,-299.87	0/0:63:63,0:63:2229:0:0:0,-18.9649,-200.622	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.2761	0/1:147:74,73:74:2643:73:2607:-190.483,0,-193.835	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.657	0/1:27:10,17:10:360:17:612:-47.2856,0,-24.6132	0/1:14:7,7:7:244:7:252:-18.8145,0,-18.085	0/0:109:109,0:109:3851:0:0:0,-32.8123,-346.473	0/1:103:48,55:48:1712:55:1976:-147.104,0,-123.156	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:133:132,1:132:4702:1:36:0,-36.4387,-419.563	0/1:145:96,49:96:3425:49:1756:-114.639,0,-263.628	0/0:106:103,3:103:3673:3:108:0,-21.834,-320.595	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/1:184:100,84:100:3551:84:3008:-215.295,0,-264.292	0/0:105:102,3:102:3626:3:108:0,-21.533,-316.307	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.183	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.977	0/1:55:33,22:33:1184:22:784:-54.3273,0,-89.7213	0/0:41:41,0:41:1453:0:0:0,-12.3422,-130.99	0/0:112:112,0:112:4001:0:0:0,-33.7154,-359.826	0/1:75:42,33:42:1493:33:1184:-84.2829,0,-112.074	0/0:234:234,0:234:8353:0:0:0,-70.441,-750.687	0/0:139:138,1:138:4944:1:36:0,-38.2449,-441.472	0/0:167:167,0:167:5977:0:0:0,-50.272,-537.634	0/0:114:111,3:111:3984:3:108:0,-24.2422,-348.271	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.058	0/1:109:72,37:72:2561:37:1324:-86.6051,0,-197.575	0/0:275:275,0:275:9876:0:0:0,-82.7832,-887.16	0/0:91:91,0:91:3267:0:0:0,-27.3937,-293.979	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.064	0/1:61:40,21:40:1421:21:756:-50.0044,0,-109.809	0/0:172:170,2:170:6084:2:72:0,-44.9694,-540.67	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	0/0:102:102,0:102:3660:0:0:0,-30.7051,-328.008	0/0:117:117,0:117:4188:0:0:0,-35.2205,-377.008	0/0:51:51,0:51:1824:0:0:0,-15.3525,-163.389	0/1:101:59,42:59:2120:42:1500:-104.847,0,-160.639	0/1:92:40,52:40:1436:52:1851:-139.16,0,-101.414	0/0:154:154,0:154:5528:0:0:0,-46.3586,-497.347	0/0:159:159,0:159:5691:0:0:0,-47.8638,-512.127
chr02	14353683	.	ACAC	TCAC,TCAT	74388.4	PASS	AB=0.442216,0.552053;ABP=33.3757,27.6514;AC=155,33;AF=0.824468,0.175532;AN=188;AO=2851,590;CIGAR=1X3M,1X2M1X;DP=3463;DPB=3467.5;DPRA=11.3835,0.944614;EPP=6150.52,1284.18;EPPR=11.6962;GTI=0;LEN=1,4;MEANALT=1.48352,2.03125;MQM=59.63,58.5661;MQMR=59;NS=94;NUMALT=2;ODDS=0.915456;PAIRED=0,0;PAIREDR=0;PAO=7,7;PQA=243.5,243.5;PQR=0;PRO=0;QA=100802,20099;QR=121;RO=4;RPL=2851,590;RPP=6193.88,1284.18;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=2846,590;SAP=6150.52,1284.18;SAR=5,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9,0:0:0:9,0:316,0:-28.7789,-2.70927,0,-28.7789,-2.70927,-28.7789	1/1:37:0,36,0:0:0:36,0:1277,0:-114.939,-10.8371,0,-114.939,-10.8371,-114.939	1/1:44:0,43,0:0:0:43,0:1524,0:-137.215,-12.9443,0,-137.215,-12.9443,-137.215	1/1:55:0,55,0:0:0:55,0:1922,0:-173.251,-16.5567,0,-173.251,-16.5567,-173.251	1/2:39:0,15,24:0:0:15,24:523,807:-108.2,-65.6603,-61.1448,-42.8829,0,-35.6582	1/2:20:0,8,12:0:0:8,12:269,418:-56.0896,-34.326,-31.9178,-22.1043,0,-18.4919	1/1:42:0,42,0:0:0:42,0:1500,0:-135.288,-12.6433,0,-135.288,-12.6433,-135.288	1/1:51:0,51,0:0:0:51,0:1788,0:-161.132,-15.3525,0,-161.132,-15.3525,-161.132	1/1:29:0,29,0:0:0:29,0:1003,0:-90.5736,-8.72987,0,-90.5736,-8.72987,-90.5736	1/1:46:0,44,0:0:0:44,0:1580,0:-142.139,-13.2453,0,-142.139,-13.2453,-142.139	1/1:24:0,24,0:0:0:24,0:843,0:-76.1504,-7.22472,0,-76.1504,-7.22472,-76.1504	1/1:20:0,20,0:0:0:20,0:682,0:-61.6946,-6.0206,0,-61.6946,-6.0206,-61.6946	1/1:20:0,20,0:0:0:20,0:712,0:-64.2127,-6.0206,0,-64.2127,-6.0206,-64.2127	1/2:35:0,19,16:0:0:19,16:667,534:-97.8055,-43.5118,-37.7922,-54.6351,0,-49.8186	1/2:19:0,9,10:0:0:9,10:320,342:-54.1814,-28.0973,-25.388,-26.4331,0,-23.4228	1/2:29:0,15,13:0:0:15,13:525,424:-77.0337,-34.3148,-29.7994,-42.8064,0,-38.893	1/1:38:1,37,0:1:35:37,0:1273,0:-111.293,-7.94051,0,-111.594,-11.1381,-114.442	1/2:30:0,11,19:0:0:11,19:396,652:-85.4798,-53.1713,-49.86,-32.6085,0,-26.8889	1/1:17:0,17,0:0:0:17,0:604,0:-54.6401,-5.11751,0,-54.6401,-5.11751,-54.6401	1/2:117:0,54,62:0:0:54,62:1914,2173:-332.549,-176.641,-160.385,-155.901,0,-137.237	1/2:68:0,27,41:0:0:27,41:956,1381:-189.949,-112.077,-103.949,-78.2187,0,-65.8765	1/1:78:0,78,0:0:0:78,0:2764,0:-248.943,-23.4803,0,-248.943,-23.4803,-248.943	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:24:0,15,9:0:0:15,9:532,291:-67.1453,-23.7954,-19.28,-43.6848,0,-40.9755	1/1:24:0,24,0:0:0:24,0:860,0:-77.6479,-7.22472,0,-77.6479,-7.22472,-77.6479	1/1:129:1,128,0:1:25:128,0:4541,0:-406.383,-36.4883,0,-406.684,-38.5318,-408.632	1/1:64:0,64,0:0:0:64,0:2271,0:-204.627,-19.2659,0,-204.627,-19.2659,-204.627	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:152:0,152,0:0:0:152,0:5408,0:-486.743,-45.7566,0,-486.743,-45.7566,-486.743	1/1:41:0,40,0:0:0:40,0:1436,0:-129.236,-12.0412,0,-129.236,-12.0412,-129.236	1/2:26:0,7,19:0:0:7,19:252,671:-75.5545,-54.9907,-52.8835,-20.9217,0,-15.2022	1/1:14:0,14,0:0:0:14,0:504,0:-45.6828,-4.21442,0,-45.6828,-4.21442,-45.6828	1/1:8:0,8,0:0:0:8,0:288,0:-26.2628,-2.40824,0,-26.2628,-2.40824,-26.2628	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:2:0,1,1:0:0:1,1:32,35:-5.76098,-3.1976,-2.89657,-2.89828,0,-2.59725	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:65:0,65,0:0:0:65,0:2306,0:-207.676,-19.567,0,-207.676,-19.567,-207.676	1/1:79:0,79,0:0:0:79,0:2765,0:-248.811,-23.7814,0,-248.811,-23.7814,-248.811	1/2:26:0,11,15:0:0:11,15:380,508:-72.3754,-41.4973,-38.186,-31.2205,0,-26.705	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:50:0,50,0:0:0:50,0:1779,0:-160.374,-15.0515,0,-160.374,-15.0515,-160.374	1/1:16:0,16,0:0:0:16,0:567,0:-51.3607,-4.81648,0,-51.3607,-4.81648,-51.3607	1/1:39:0,38,0:0:0:38,0:1352,0:-121.722,-11.4391,0,-121.722,-11.4391,-121.722	1/1:26:0,26,0:0:0:26,0:914,0:-82.5701,-7.82678,0,-82.5701,-7.82678,-82.5701	1/2:29:0,12,17:0:0:12,17:423,564:-80.0569,-45.607,-41.9947,-34.7927,0,-29.6752	1/1:52:0,52,0:0:0:52,0:1846,0:-166.415,-15.6536,0,-166.415,-15.6536,-166.415	1/2:43:0,16,27:0:0:16,27:533,916:-117.655,-74.545,-69.7286,-43.445,0,-35.3172	1/1:56:0,55,1:0:0:55,1:1964,25:-176.765,-16.5567,0,-174.818,-14.3579,-174.517	1/1:39:0,39,0:0:0:39,0:1385,0:-124.945,-11.7402,0,-124.945,-11.7402,-124.945	1/1:39:0,39,0:0:0:39,0:1375,0:-124.027,-11.7402,0,-124.027,-11.7402,-124.027	1/1:68:0,67,0:0:0:67,0:2379,0:-214.006,-20.169,0,-214.006,-20.169,-214.006	1/2:3:0,1,2:0:0:1,2:36,71:-9.07833,-6.13924,-5.83821,-3.29724,0,-2.69518	1/1:58:0,58,0:0:0:58,0:2053,0:-184.949,-17.4597,0,-184.949,-17.4597,-184.949	1/1:15:0,15,0:0:0:15,0:531,0:-48.1219,-4.51545,0,-48.1219,-4.51545,-48.1219	2/2:6:0,0,6:0:0:0,6:0,195:-17.8626,-17.8626,-17.8626,-1.80618,-1.80618,0	1/2:63:0,28,34:0:0:28,34:982,1152:-173.207,-93.2893,-84.8605,-79.8555,0,-69.6204	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	2/2:2:0,0,2:0:0:0,2:0,68:-6.45637,-6.45637,-6.45637,-0.60206,-0.60206,0	1/2:6:0,2,3:0:0:2,3:72,101:-14.1699,-8.27675,-7.67469,-5.97473,0,-5.07164	1/1:30:0,30,0:0:0:30,0:1045,0:-94.3573,-9.0309,0,-94.3573,-9.0309,-94.3573	1/2:57:2,28,27:2:61:28,27:992,946:-152.287,-72.0758,-68.5301,-75.9744,0,-72.7296	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:93:0,92,0:0:0:92,0:3270,0:-294.269,-27.6948,0,-294.269,-27.6948,-294.269	1/2:74:0,26,48:0:0:26,48:936,1654:-210.988,-134.617,-126.79,-76.7246,0,-62.2752	1/1:8:0,8,0:0:0:8,0:275,0:-25.0835,-2.40824,0,-25.0835,-2.40824,-25.0835	1/1:57:0,57,0:0:0:57,0:1983,0:-178.732,-17.1587,0,-178.732,-17.1587,-178.732	1/2:92:0,44,48:0:0:44,48:1559,1593:-256.193,-129.185,-115.939,-127.352,0,-112.903	1/1:42:0,41,0:0:0:41,0:1425,0:-128.306,-12.3422,0,-128.306,-12.3422,-128.306	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:10:0,10,0:0:0:10,0:360,0:-32.6901,-3.0103,0,-32.6901,-3.0103,-32.6901	1/2:41:0,15,26:0:0:15,26:532,880:-114.786,-71.4362,-66.9208,-43.6976,0,-35.8709	1/1:5:0,5,0:0:0:5,0:171,0:-15.7255,-1.50515,0,-15.7255,-1.50515,-15.7255	1/1:24:0,24,0:0:0:24,0:848,0:-76.6151,-7.22472,0,-76.6151,-7.22472,-76.6151	1/2:20:0,11,9:0:0:11,9:392,306:-56.9205,-25.1579,-21.8465,-32.109,0,-29.3997	1/1:29:0,28,0:0:0:28,0:980,0:-88.2294,-8.42884,0,-88.2294,-8.42884,-88.2294	1/1:70:0,70,0:0:0:70,0:2480,0:-223.449,-21.0721,0,-223.449,-21.0721,-223.449	1/1:52:0,52,0:0:0:52,0:1859,0:-167.579,-15.6536,0,-167.579,-15.6536,-167.579	1/1:23:0,23,0:0:0:23,0:794,0:-71.7615,-6.92369,0,-71.7615,-6.92369,-71.7615	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:44:0,41,0:0:0:41,0:1440,0:-129.543,-12.3422,0,-129.543,-12.3422,-129.543	1/2:75:0,34,41:0:0:34,41:1203,1379:-209.99,-112.023,-101.788,-98.3121,0,-85.9699	1/1:60:0,60,0:0:0:60,0:2110,0:-190.159,-18.0618,0,-190.159,-18.0618,-190.159	1/1:60:0,60,0:0:0:60,0:2099,0:-189.098,-18.0618,0,-189.098,-18.0618,-189.098	1/1:16:0,16,0:0:0:16,0:564,0:-51.0856,-4.81648,0,-51.0856,-4.81648,-51.0856	1/2:23:0,10,13:0:0:10,13:356,446:-65.5499,-36.5314,-33.5211,-29.3686,0,-25.4552	1/1:46:0,46,0:0:0:46,0:1640,0:-147.886,-13.8474,0,-147.886,-13.8474,-147.886	1/2:22:0,12,10:0:0:12,10:424,338:-62.2104,-27.6827,-24.0703,-34.8207,0,-31.8104	1/1:32:0,32,0:0:0:32,0:1131,0:-102.039,-9.63296,0,-102.039,-9.63296,-102.039	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/1:22:0,21,1:0:0:21,1:748,36:-67.281,-6.32163,0,-64.3434,-3.02439,-64.0424	1/2:37:0,19,18:0:0:19,18:682,633:-107.508,-51.8755,-46.156,-55.9874,0,-50.5688	1/2:27:0,13,14:0:0:13,14:464,488:-77.8622,-40.0308,-36.1174,-38.1841,0,-33.9697	1/1:33:0,32,0:0:0:32,0:1139,0:-102.437,-9.63296,0,-102.437,-9.63296,-102.437	1/1:31:0,31,0:0:0:31,0:1089,0:-98.315,-9.33193,0,-98.315,-9.33193,-98.315
chr02	14551214	.	A	C	14355.5	PASS	AB=0.532797;ABP=18.1085;AC=29;AF=0.155914;AN=186;AO=869;CIGAR=1X;DP=5682;DPB=5682;DPRA=0.90529;EPP=1872.69;EPPR=10408.7;GTI=1;LEN=1;MEANALT=1;MQM=59.9402;MQMR=59.9463;NS=93;NUMALT=1;ODDS=1.50329;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30574;QR=166792;RO=4808;RPL=867;RPP=1872.69;RPPR=10408.7;RPR=2;RUN=1;SAF=869;SAP=1890.02;SAR=0;SRF=4808;SRP=10443.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1037:0:0:0,-9.0309,-93.637	0/0:52:52,0:52:1761:0:0:0,-15.6536,-158.764	0/0:99:99,0:99:3420:0:0:0,-29.802,-308.014	0/0:87:87,0:87:3035:0:0:0,-26.1896,-272.888	0/1:28:12,16:12:420:16:566:-42.8328,0,-29.7052	0/1:28:11,17:11:392:17:597:-45.6273,0,-27.1912	0/0:89:87,2:87:3014:2:72:0,-19.9549,-264.654	0/0:124:124,0:124:4201:0:0:0,-37.3277,-378.274	0/0:52:52,0:52:1801:0:0:0,-15.6536,-162.367	0/0:37:37,0:37:1260:0:0:0,-11.1381,-113.689	0/0:45:45,0:45:1537:0:0:0,-13.5463,-138.613	0/0:64:64,0:64:2258:0:0:0,-19.2659,-203.483	0/0:53:53,0:53:1844:0:0:0,-15.9546,-166.238	0/1:62:28,34:28:995:34:1184:-88.198,0,-71.2002	0/1:53:20,33:20:668:33:1153:-88.1199,0,-44.4749	0/1:36:19,17:19:640:17:608:-44.2149,0,-47.0777	0/0:62:61,0:61:2085:0:0:0,-18.3628,-187.537	0/1:50:20,30:20:699:30:1051:-79.8471,0,-48.181	0/0:38:38,0:38:1270:0:0:0,-11.4391,-114.591	0/1:74:28,46:28:967:46:1633:-124.982,0,-65.0644	0/1:76:38,38:38:1283:38:1313:-95.5865,0,-92.8767	0/0:83:83,0:83:2816:0:0:0,-24.9855,-253.616	0/0:36:36,0:36:1214:0:0:0,-10.8371,-109.554	0/1:87:40,47:40:1406:47:1664:-123.855,0,-100.646	0/0:46:46,0:46:1579:0:0:0,-13.8474,-142.389	0/0:218:218,0:218:7512:0:0:0,-65.6245,-676.133	0/0:119:118,0:118:4130:0:0:0,-35.5215,-371.528	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/0:153:153,0:153:5285:0:0:0,-46.0576,-475.789	0/0:53:53,0:53:1816:0:0:0,-15.9546,-163.714	0/1:80:43,37:43:1501:37:1313:-94.3873,0,-111.299	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:194:194,0:194:6880:0:0:0,-58.3998,-619.274	0/0:96:96,0:96:3294:0:0:0,-28.8989,-296.68	0/1:73:42,31:42:1483:31:1086:-76.0724,0,-111.78	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:49:49,0:49:1629:0:0:0,-14.7505,-146.798	0/0:34:34,0:34:1174:0:0:0,-10.235,-105.96	0/0:76:74,0:74:2593:0:0:0,-22.2762,-233.26	0/0:65:65,0:65:2284:0:0:0,-19.5669,-205.784	0/1:66:33,33:33:1117:33:1157:-84.5636,0,-80.961	0/0:122:122,0:122:4284:0:0:0,-36.7257,-385.734	0/1:63:36,27:36:1224:27:955:-67.3006,0,-91.4879	0/0:115:115,0:115:3898:0:0:0,-34.6184,-351.011	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:59:59,0:59:2075:0:0:0,-17.7608,-187.018	0/0:95:95,0:95:3319:0:0:0,-28.5978,-298.924	.:.:.:.:.:.:.:.	0/0:86:84,2:84:2955:2:72:0,-19.0519,-259.155	0/0:45:44,1:44:1538:1:36:0,-9.94807,-135.11	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:64:24,40:24:800:40:1412:-108.111,0,-53.037	0/0:21:21,0:21:698:0:0:0,-6.32163,-63.1292	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:10:9,1:9:309:1:36:-0.587975,0,-25.1304	0/0:33:33,0:33:1111:0:0:0,-9.93399,-100.29	0/1:108:52,56:52:1845:56:1991:-146.951,0,-133.817	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:94:94,0:94:3247:0:0:0,-28.2968,-292.447	0/1:109:56,53:56:1889:53:1885:-137.116,0,-137.465	0/0:38:36,2:36:1231:2:64:0,-5.36045,-105.006	0/0:27:27,0:27:934:0:0:0,-8.12781,-84.3687	0/1:77:37,40:37:1262:40:1428:-105.638,0,-90.6914	0/0:51:51,0:51:1774:0:0:0,-15.3525,-159.939	0/0:23:23,0:23:804:0:0:0,-6.92369,-72.6793	0/0:31:31,0:31:1058:0:0:0,-9.33193,-95.5226	0/1:82:46,36:46:1620:36:1237:-86.941,0,-121.405	0/0:12:12,0:12:401:0:0:0,-3.61236,-36.4107	0/0:74:73,1:73:2565:1:24:0,-19.8776,-228.696	0/1:64:30,34:30:1030:34:1196:-88.6767,0,-73.7384	0/0:99:99,0:99:3481:0:0:0,-29.802,-313.502	0/0:59:59,0:59:2091:0:0:0,-17.7608,-188.46	0/0:49:49,0:49:1708:0:0:0,-14.7505,-153.685	0/0:36:36,0:36:1241:0:0:0,-10.8371,-111.987	0/0:9:9,0:9:290:0:0:0,-2.70927,-26.4121	0/0:34:34,0:34:1189:0:0:0,-10.235,-107.313	0/1:43:22,21:22:761:21:715:-51.7187,0,-55.8626	0/0:148:148,0:148:5176:0:0:0,-44.5524,-465.894	0/0:95:95,0:95:3304:0:0:0,-28.5978,-297.582	0/0:48:47,0:47:1653:0:0:0,-14.1484,-148.696	0/1:78:33,45:33:1172:45:1585:-119.457,0,-82.3072	0/0:141:141,0:141:4970:0:0:0,-42.4452,-447.454	0/1:33:13,20:13:456:20:713:-54.5625,0,-31.4392	0/0:70:70,0:70:2468:0:0:0,-21.0721,-222.373	0/0:66:66,0:66:2281:0:0:0,-19.868,-205.548	0/0:37:37,0:37:1292:0:0:0,-11.1381,-116.578	0/1:77:30,47:30:1063:47:1660:-126.507,0,-72.8015	0/1:73:22,51:22:772:51:1776:-138.143,0,-47.8261	0/0:39:39,0:39:1357:0:0:0,-11.7402,-122.425	0/0:95:95,0:95:3359:0:0:0,-28.5978,-302.529
chr02	14729176	.	A	T	43017.4	PASS	AB=0.52976;ABP=30.2814;AC=28;AF=0.150538;AN=186;AO=1900;CIGAR=1X;DP=13612;DPB=13612;DPRA=1.26968;EPP=592.192;EPPR=3071.74;GTI=1;LEN=1;MEANALT=1.05714;MQM=59.9658;MQMR=59.9886;NS=93;NUMALT=1;ODDS=8.85262;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68034;QR=419239;RO=11710;RPL=14;RPP=4008.1;RPPR=24655.2;RPR=1886;RUN=1;SAF=1323;SAP=639.041;SAR=577;SRF=7979;SRP=3349.32;SRR=3731;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:168:168,0:168:6024:0:0:0,-50.573,-542.263	0/0:442:441,1:441:15797:1:24:0,-130.655,-1418.93	0/1:132:64,68:64:2296:68:2444:-180.479,0,-167.165	0/1:34:14,20:14:504:20:720:-54.8938,0,-35.4631	0/0:148:148,0:148:5308:0:0:0,-44.5524,-477.853	0/0:155:155,0:155:5553:0:0:0,-46.6596,-499.892	0/0:131:131,0:131:4681:0:0:0,-39.4349,-421.45	0/0:205:205,0:205:7344:0:0:0,-61.7111,-661.008	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/0:111:111,0:111:3992:0:0:0,-33.4143,-359.468	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:55:23,32:23:828:32:1146:-86.8928,0,-58.2875	0/1:169:76,93:76:2728:93:3331:-249.133,0,-194.889	0/1:47:19,28:19:680:28:1008:-76.8879,0,-47.3808	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:39:17,22:17:608:22:792:-59.8655,0,-43.3119	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:432:228,204:228:8172:204:7295:-526.557,0,-605.448	0/1:216:123,93:123:4416:93:3323:-234.265,0,-332.588	0/0:171:171,0:171:6088:0:0:0,-51.4761,-548.024	0/0:242:237,5:237:8476:5:180:0,-56.2972,-746.291	0/1:93:37,56:37:1328:56:2012:-153.357,0,-91.8264	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:478:478,0:478:17050:0:0:0,-143.892,-1534.15	0/0:190:190,0:190:6804:0:0:0,-57.1957,-612.431	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:591:591,0:591:21144:0:0:0,-177.909,-1902.43	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.889	0/1:180:72,108:72:2576:108:3846:-292.148,0,-177.904	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:419:419,0:419:14978:0:0:0,-126.132,-1347.75	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.839	0/1:35:22,13:22:792:13:464:-31.5615,0,-61.0696	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:166:166,0:166:5923:0:0:0,-49.971,-533.175	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:265:265,0:265:9492:0:0:0,-79.7729,-854.181	0/0:167:167,0:167:5980:0:0:0,-50.272,-538.306	0/1:127:63,64:63:2260:64:2304:-169.39,0,-165.429	0/0:214:214,0:214:7651:0:0:0,-64.4204,-688.627	0/1:104:44,59:44:1580:59:2111:-158.892,0,-111.126	0/0:381:381,0:381:13644:0:0:0,-114.692,-1227.74	0/0:169:169,0:169:6056:0:0:0,-50.8741,-545.142	0/0:295:294,1:294:10532:1:36:0,-85.2056,-944.195	0/0:215:215,0:215:7682:0:0:0,-64.7214,-691.415	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:118:118,0:118:4197:0:0:0,-35.5215,-377.912	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:147:61,86:61:2165:86:3079:-233.086,0,-150.864	0/0:111:110,1:110:3921:1:36:0,-29.8161,-349.398	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/0:85:85,0:85:3041:0:0:0,-25.5875,-273.918	0/1:160:85,75:85:3052:75:2700:-195.079,0,-226.744	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:274:273,1:273:9733:1:36:0,-78.8839,-872.32	0/1:399:177,222:177:6352:222:7947:-595.128,0,-451.658	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:233:233,0:233:8341:0:0:0,-70.14,-750.069	0/1:421:195,226:195:6985:226:8083:-600.594,0,-501.978	0/0:249:246,3:246:8812:3:100:0,-65.626,-783.736	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:74:32,42:32:1148:42:1504:-113.378,0,-81.3536	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.043	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/1:98:53,45:53:1896:45:1606:-115.329,0,-141.417	0/0:188:188,0:188:6717:0:0:0,-56.5936,-604.605	0/0:293:293,0:293:10492:0:0:0,-88.2018,-944.196	0/0:167:167,0:167:5992:0:0:0,-50.272,-539.384	0/0:123:123,0:123:4412:0:0:0,-37.0267,-397.251	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:165:164,1:164:5880:1:36:0,-46.0717,-525.711	0/1:183:91,91:91:3248:91:3267:-239.102,0,-237.395	0/0:575:573,2:573:20513:2:72:0,-166.256,-1838.82	0/0:141:141,0:141:5064:0:0:0,-42.4452,-455.903	0/0:145:145,0:145:5204:0:0:0,-43.6493,-468.497	0/1:107:46,61:46:1656:61:2188:-164.818,0,-117.118	0/0:251:251,0:251:8992:0:0:0,-75.5585,-809.256	0/1:24:17,7:17:612:7:252:-15.8042,0,-48.1887	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:45:25,20:25:896:20:720:-51.5824,0,-67.414	0/1:188:65,123:65:2332:123:4404:-339.939,0,-153.546	0/0:219:219,0:219:7817:0:0:0,-65.9256,-703.56	0/0:248:248,0:248:8904:0:0:0,-74.6554,-801.339
chr02	14729218	.	TAACA	CAACG,CAACA	196655	PASS	AB=0.500584,0.490463;ABP=3.01791,5.03977;AC=156,30;AF=0.83871,0.16129;AN=186;AO=7765,1274;CIGAR=1X3M1X,1X4M;DP=9105;DPB=9105.2;DPRA=24.731,1.04346;EPP=16786.4,2760.79;EPPR=5.18177;GTI=3;LEN=5,1;MEANALT=2.01087,2.85714;MQM=59.9616,59.9898;MQMR=60;NS=93;NUMALT=2;ODDS=2.16591;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=272183,45434;QR=36;RO=1;RPL=7759,1273;RPP=16812.4,2760.79;RPPR=5.18177;RPR=6,1;RUN=1,1;SAF=3,2;SAP=16838.4,2752.12;SAR=7762,1272;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:73:0,73,0:0:0:73,0:2534,0:-228.31,-21.9752,0,-228.31,-21.9752,-228.31	1/1:93:0,93,0:0:0:93,0:3245,0:-292.274,-27.9958,0,-292.274,-27.9958,-292.274	1/1:197:0,192,0:0:0:192,0:6790,0:-610.783,-57.7978,0,-610.783,-57.7978,-610.783	1/1:183:0,181,0:0:0:181,0:6344,0:-570.717,-54.4864,0,-570.717,-54.4864,-570.717	1/2:97:0,45,50:0:0:45,50:1582,1787:-274.561,-145.792,-132.246,-128.853,0,-113.802	1/2:22:0,12,9:0:0:12,9:429,315:-60.6788,-25.691,-22.0786,-35.0513,0,-32.342	1/1:41:0,41,0:0:0:41,0:1440,0:-129.894,-12.3422,0,-129.894,-12.3422,-129.894	1/1:137:0,135,0:0:0:135,0:4730,0:-425.502,-40.6391,0,-425.502,-40.6391,-425.502	1/1:120:0,120,0:0:0:120,0:4199,0:-378.096,-36.1236,0,-378.096,-36.1236,-378.096	1/1:102:0,102,0:0:0:102,0:3557,0:-320.341,-30.7051,0,-320.341,-30.7051,-320.341	1/1:81:0,81,0:0:0:81,0:2849,0:-256.649,-24.3834,0,-256.649,-24.3834,-256.649	1/1:139:0,137,0:0:0:137,0:4826,0:-434.155,-41.2411,0,-434.155,-41.2411,-434.155	1/1:97:0,97,0:0:0:97,0:3397,0:-305.911,-29.1999,0,-305.911,-29.1999,-305.911	1/2:93:0,43,48:0:0:43,48:1487,1716:-260.771,-139.945,-127.001,-120.846,0,-106.396	1/2:89:0,43,46:0:0:43,46:1528,1644:-258.913,-134.401,-121.457,-124.868,0,-111.021	1/2:94:0,46,48:0:0:46,48:1631,1728:-274.23,-141.356,-127.508,-133.231,0,-118.781	1/1:45:0,44,1:0:0:44,1:1559,36:-140.242,-13.2453,0,-137.305,-9.94808,-137.004	1/2:29:0,11,18:0:0:11,18:384,635:-83.2912,-52.0584,-48.7471,-31.5831,0,-26.1645	1/1:53:0,53,0:0:0:53,0:1872,0:-168.756,-15.9546,0,-168.756,-15.9546,-168.756	1/2:158:0,85,72:0:0:85,72:2993,2584:-454.545,-210.883,-185.296,-243.766,0,-222.091	1/2:243:0,126,115:0:0:126,115:4381,4101:-690.556,-334.37,-296.441,-356.251,0,-321.633	1/1:70:0,70,0:0:0:70,0:2466,0:-222.194,-21.0721,0,-222.194,-21.0721,-222.194	1/1:134:0,130,3:0:0:130,3:4563,108:-410.505,-39.1339,0,-401.692,-30.2543,-400.789	1/2:70:0,31,39:0:0:31,39:1100,1396:-203.82,-114.199,-104.867,-89.9772,0,-78.237	1/1:102:0,102,0:0:0:102,0:3575,0:-321.961,-30.7051,0,-321.961,-30.7051,-321.961	1/1:237:0,235,0:0:0:235,0:8195,0:-737.249,-70.7421,0,-737.249,-70.7421,-737.249	1/1:205:0,203,0:0:0:203,0:7095,0:-638.245,-61.1091,0,-638.245,-61.1091,-638.245	1/1:43:0,43,0:0:0:43,0:1539,0:-138.803,-12.9443,0,-138.803,-12.9443,-138.803	1/1:274:0,273,0:0:0:273,0:9559,0:-859.936,-82.1812,0,-859.936,-82.1812,-859.936	1/1:96:0,96,0:0:0:96,0:3366,0:-303.159,-28.8989,0,-303.159,-28.8989,-303.159	1/2:50:0,23,27:0:0:23,27:780,968:-142.55,-79.3096,-72.3859,-63.5881,0,-55.4603	.:.:.:.:.:.:.:.	1/1:8:0,8,0:0:0:8,0:281,0:-25.6303,-2.40824,0,-25.6303,-2.40824,-25.6303	1/1:2:0,1,0:0:0:1,0:35,0:-3.16873,-0.30103,0,-3.16873,-0.30103,-3.16873	1/2:11:0,9,2:0:0:9,2:308,72:-31.2197,-6.23466,-3.52539,-25.3417,0,-24.7396	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:211:0,210,0:0:0:210,0:7411,0:-666.682,-63.2163,0,-666.682,-63.2163,-666.682	1/1:81:0,81,0:0:0:81,0:2767,0:-249.271,-24.3834,0,-249.271,-24.3834,-249.271	1/2:45:0,28,17:0:0:28,17:995,608:-131.014,-49.9345,-41.5057,-81.4357,0,-76.3182	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:101:0,101,0:0:0:101,0:3544,0:-319.172,-30.404,0,-319.172,-30.404,-319.172	1/1:26:0,26,0:0:0:26,0:922,0:-83.297,-7.82678,0,-83.297,-7.82678,-83.297	1/1:226:0,224,1:0:0:224,1:7838,36:-705.163,-67.4307,0,-702.226,-64.4334,-701.925	1/1:96:0,95,0:0:0:95,0:3335,0:-300.01,-28.5979,0,-300.01,-28.5979,-300.01	1/2:71:0,31,39:0:0:31,39:1073,1396:-201.09,-113.898,-104.566,-87.2417,0,-75.5016	1/1:119:0,118,0:0:0:118,0:4156,0:-373.937,-35.5215,0,-373.937,-35.5215,-373.937	1/2:149:0,79,70:0:0:79,70:2759,2478:-426.618,-202.199,-178.417,-224.771,0,-203.699	1/1:179:0,178,0:0:0:178,0:6208,0:-558.619,-53.5833,0,-558.619,-53.5833,-558.619	1/1:109:0,109,0:0:0:109,0:3846,0:-346.338,-32.8123,0,-346.338,-32.8123,-346.338	1/1:159:0,158,0:0:0:158,0:5563,0:-500.499,-47.5627,0,-500.499,-47.5627,-500.499	1/1:88:0,88,0:0:0:88,0:3070,0:-276.531,-26.4906,0,-276.531,-26.4906,-276.531	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/1:143:0,143,0:0:0:143,0:5040,0:-453.753,-43.0473,0,-453.753,-43.0473,-453.753	1/1:37:0,36,0:0:0:36,0:1245,0:-111.99,-10.8371,0,-111.99,-10.8371,-111.99	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:178:0,100,77:0:0:100,77:3486,2732:-506.159,-222.66,-192.557,-283.57,0,-260.39	1/1:38:0,38,0:0:0:38,0:1318,0:-118.913,-11.4391,0,-118.913,-11.4391,-118.913	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.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chr02	14799696	.	TC	CA,TA	181953	PASS	AB=0.392219,0.604276;ABP=290.885,272.465;AC=157,31;AF=0.835106,0.164894;AN=188;AO=7166,1734;CIGAR=2X,1M1X;DP=8925;DPB=8926;DPRA=0,1.05763;EPP=15563.8,3768.34;EPPR=3.0103;GTI=0;LEN=2,1;MEANALT=1.59574,2.22222;MQM=39.42,47.6373;MQMR=60;NS=94;NUMALT=2;ODDS=4.89384;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=252113,61626;QR=59;RO=2;RPL=0,0;RPP=15563.8,3768.34;RPPR=3.0103;RPR=7166,1734;RUN=1,1;SAF=0,0;SAP=15563.8,3768.34;SAR=7166,1734;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16,0:0:0:16,0:558,0:-49.0532,-4.81648,0,-49.0532,-4.81648,-49.0532	1/1:69:0,68,1:0:0:68,1:2402,36:-207.384,-20.47,0,-204.464,-17.1923,-204.163	1/1:172:0,171,1:0:0:171,1:6028,36:-522.109,-51.4761,0,-519.189,-48.1984,-518.888	1/1:222:0,222,0:0:0:222,0:7874,0:-673.248,-66.8287,0,-673.248,-66.8287,-673.248	1/2:27:0,10,17:0:0:10,17:360,604:-76.8374,-48.7589,-45.7486,-28.4256,0,-23.3081	1/2:32:0,8,24:0:0:8,24:288,864:-93.0887,-70.4384,-68.0302,-23.0008,0,-15.7761	1/1:73:0,72,0:0:0:72,0:2528,0:-216.139,-21.6742,0,-216.139,-21.6742,-216.139	1/1:89:0,89,0:0:0:89,0:3166,0:-272.07,-26.7917,0,-272.07,-26.7917,-272.07	1/1:49:0,49,0:0:0:49,0:1708,0:-149.187,-14.7505,0,-149.187,-14.7505,-149.187	1/1:122:0,122,0:0:0:122,0:4208,0:-362.068,-36.7257,0,-362.068,-36.7257,-362.068	1/1:50:0,50,0:0:0:50,0:1750,0:-149.692,-15.0515,0,-149.692,-15.0515,-149.692	1/1:71:0,71,0:0:0:71,0:2513,0:-219.644,-21.3731,0,-219.644,-21.3731,-219.644	1/1:69:0,69,0:0:0:69,0:2443,0:-212.158,-20.7711,0,-212.158,-20.7711,-212.158	1/2:30:0,15,15:0:0:15,15:529,540:-85.4061,-44.0833,-39.5678,-41.6713,0,-37.1559	1/2:81:0,33,48:0:0:33,48:1160,1707:-227.163,-137.648,-127.714,-89.8561,0,-75.4066	1/2:46:0,15,30:0:0:15,30:514,1057:-124.737,-85.285,-80.7695,-39.5487,0,-30.5178	1/1:22:0,22,0:0:0:22,0:777,0:-68.0802,-6.62266,0,-68.0802,-6.62266,-68.0802	1/2:16:0,8,8:0:0:8,8:288,284:-46.0289,-23.3787,-20.9705,-23.0008,0,-20.5926	1/1:23:0,22,0:0:0:22,0:765,0:-66.8399,-6.62266,0,-66.8399,-6.62266,-66.8399	1/2:333:0,99,234:0:0:99,234:3491,8316:-938.554,-669.986,-640.184,-268.908,0,-198.467	1/2:260:0,117,143:0:0:117,143:4109,5088:-731.134,-411.499,-376.279,-319.979,0,-276.932	1/1:92:0,91,0:0:0:91,0:3224,0:-273.616,-27.3937,0,-273.616,-27.3937,-273.616	1/1:140:0,138,2:0:0:138,2:4791,68:-409.778,-41.5421,0,-404.302,-35.7286,-403.7	1/2:91:0,38,53:0:0:38,53:1355,1881:-257.345,-152.192,-140.753,-105.498,0,-89.5438	1/1:40:0,38,0:0:0:38,0:1344,0:-115.949,-11.4391,0,-115.949,-11.4391,-115.949	1/1:197:0,197,0:0:0:197,0:6880,0:-591.552,-59.3029,0,-591.552,-59.3029,-591.552	1/1:178:0,177,0:0:0:177,0:6204,0:-537.395,-53.2823,0,-537.395,-53.2823,-537.395	1/1:34:0,34,0:0:0:34,0:1190,0:-102.872,-10.235,0,-102.872,-10.235,-102.872	1/1:197:0,197,0:0:0:197,0:6936,0:-592.79,-59.3029,0,-592.79,-59.3029,-592.79	1/1:161:0,158,0:0:0:158,0:5559,0:-476.498,-47.5627,0,-476.498,-47.5627,-476.498	1/2:228:0,78,150:0:0:78,150:2738,5344:-643.754,-432.114,-408.633,-211.981,0,-166.827	1/1:92:0,92,0:0:0:92,0:3235,0:-279.531,-27.6948,0,-279.531,-27.6948,-279.531	1/1:28:0,27,0:0:0:27,0:948,0:-82.2394,-8.12781,0,-82.2394,-8.12781,-82.2394	1/1:23:0,23,0:0:0:23,0:790,0:-67.6496,-6.92369,0,-67.6496,-6.92369,-67.6496	1/2:34:0,28,6:0:0:28,6:973,216:-93.032,-17.881,-9.45212,-75.5043,0,-73.6982	1/1:17:0,17,0:0:0:17,0:586,0:-51.5234,-5.11751,0,-51.5234,-5.11751,-51.5234	1/1:202:0,202,0:0:0:202,0:7100,0:-609.947,-60.8081,0,-609.947,-60.8081,-609.947	1/1:98:0,98,0:0:0:98,0:3421,0:-295.717,-29.5009,0,-295.717,-29.5009,-295.717	1/2:52:1,26,25:1:23:26,25:929,885:-141.856,-69.7327,-63.6702,-70.772,0,-65.0109	1/2:14:0,8,6:0:0:8,6:288,201:-38.9724,-16.5012,-14.0929,-22.8095,0,-21.0034	1/1:151:0,149,0:0:0:149,0:5235,0:-451.309,-44.8535,0,-451.309,-44.8535,-451.309	1/1:18:0,18,0:0:0:18,0:633,0:-55.1413,-5.41854,0,-55.1413,-5.41854,-55.1413	1/1:75:0,74,0:0:0:74,0:2568,0:-222.231,-22.2762,0,-222.231,-22.2762,-222.231	1/1:41:0,41,0:0:0:41,0:1463,0:-125.249,-12.3422,0,-125.249,-12.3422,-125.249	1/2:64:0,32,32:0:0:32,32:1107,1125:-176.432,-90.6016,-80.9686,-86.1693,0,-76.5363	1/1:56:0,56,0:0:0:56,0:1988,0:-170.809,-16.8577,0,-170.809,-16.8577,-170.809	1/2:142:0,44,98:0:0:44,98:1513,3499:-400.784,-282.528,-269.282,-118.595,0,-89.0942	1/1:138:0,138,0:0:0:138,0:4852,0:-413.98,-41.5421,0,-413.98,-41.5421,-413.98	1/1:86:0,86,0:0:0:86,0:3024,0:-257.403,-25.8886,0,-257.403,-25.8886,-257.403	1/1:136:0,136,0:0:0:136,0:4854,0:-414.421,-40.9401,0,-414.421,-40.9401,-414.421	1/1:137:0,136,0:0:0:136,0:4779,0:-408.885,-40.9401,0,-408.885,-40.9401,-408.885	1/2:31:0,19,12:0:0:19,12:682,432:-87.1579,-35.2719,-29.5523,-52.2351,0,-48.6227	1/1:138:0,138,0:0:0:138,0:4849,0:-422.262,-41.5421,0,-422.262,-41.5421,-422.262	1/1:73:0,73,0:0:0:73,0:2555,0:-219.257,-21.9752,0,-219.257,-21.9752,-219.257	1/2:13:0,5,8:0:0:5,8:175,288:-37.4879,-23.7168,-22.2116,-14.1178,0,-11.7095	1/2:202:0,62,140:0:0:62,140:2186,4961:-570.144,-401.238,-382.575,-169.246,0,-127.102	1/1:34:0,34,0:0:0:34,0:1178,0:-100.816,-10.235,0,-100.816,-10.235,-1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chr02	14801594	.	G	A	190901	PASS	AB=0.4894;ABP=5.17394;AC=159;AF=0.845745;AN=188;AO=8526;CIGAR=1X;DP=9665;DPB=9665;DPRA=0;EPP=18482.3;EPPR=2474.15;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9865;MQMR=60;NS=94;NUMALT=1;ODDS=2.98106;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=305559;QR=40634;RO=1138;RPL=8522;RPP=18482.3;RPPR=2474.15;RPR=4;RUN=1;SAF=0;SAP=18517;SAR=8526;SRF=0;SRP=2474.15;SRR=1138;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:119:0,119:0:0:119:4250:-382.671,-35.8226,0	1/1:289:0,289:0:0:289:10372:-933.368,-86.9977,0	1/1:260:0,260:0:0:260:9321:-838.852,-78.2678,0	0/1:83:55,28:55:1968:28:1008:-66.0509,0,-152.41	0/1:43:21,22:21:752:22:792:-58.6614,0,-55.062	1/1:184:0,184:0:0:184:6608:-594.797,-55.3895,0	1/1:133:1,132:1:36:132:4699:-419.474,-36.4387,0	1/1:161:1,160:1:36:160:5728:-511.849,-44.8676,0	1/1:103:0,103:0:0:103:3673:-330.773,-31.0061,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:41:0,41:0:0:41:1467:-132.325,-12.3422,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/1:32:16,16:16:572:16:572:-42.1805,0,-42.1805	0/1:14:7,7:7:244:7:252:-18.8145,0,-18.085	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:33:14,19:14:496:19:684:-51.9563,0,-35.0403	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:277:125,152:125:4461:152:5464:-408.5,0,-318.274	0/1:147:80,67:80:2842:67:2412:-173.084,0,-211.767	1/1:274:1,273:1:36:273:9763:-875.018,-78.8839,0	1/1:93:0,93:0:0:93:3340:-300.816,-27.9958,0	0/1:192:101,91:101:3615:91:3268:-236.542,0,-267.757	1/1:116:0,116:0:0:116:4151:-373.773,-34.9195,0	1/1:382:1,381:1:36:381:13671:-1226.57,-111.395,0	1/1:247:0,247:0:0:247:8858:-797.201,-74.3544,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:261:0,261:0:0:261:9371:-843.349,-78.5688,0	1/1:137:0,137:0:0:137:4899:-441.062,-41.2411,0	0/1:101:53,48:53:1904:48:1728:-125.401,0,-141.234	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:7:0,7:0:0:7:241:-22.0247,-2.10721,0	1/1:129:0,129:0:0:129:4625:-416.411,-38.8329,0	1/1:305:0,305:0:0:305:10917:-982.424,-91.8142,0	0/1:25:11,13:11:396:13:464:-34.5132,0,-28.3982	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:173:0,173:0:0:173:6194:-557.556,-52.0782,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:188:0,188:0:0:188:6733:-606.012,-56.5936,0	1/1:47:0,47:0:0:47:1665:-150.135,-14.1484,0	0/1:26:13,13:13:464:13:451:-33.093,0,-34.2707	1/1:158:1,157:1:36:157:5583:-498.219,-43.9645,0	0/1:142:70,72:70:2488:72:2584:-190.063,0,-181.428	1/1:283:0,283:0:0:283:10171:-915.314,-85.1915,0	1/1:188:0,188:0:0:188:6739:-606.582,-56.5936,0	1/1:128:0,128:0:0:128:4600:-414.162,-38.5318,0	1/1:279:1,278:1:36:278:9968:-893.457,-80.3891,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:202:0,202:0:0:202:7251:-652.639,-60.8081,0	1/1:39:0,39:0:0:39:1395:-125.848,-11.7402,0	0/1:25:13,12:13:468:12:428:-31.3331,0,-34.9339	0/1:132:66,66:66:2360:66:2364:-173.282,0,-172.923	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:14:4,10:4:144:10:352:-27.8038,0,-9.0992	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	1/1:44:0,44:0:0:44:1571:-141.681,-13.2453,0	0/1:101:32,69:32:1143:69:2467:-191.879,0,-72.7747	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:226:0,226:0:0:226:8065:-725.868,-68.0328,0	0/1:211:114,97:114:4069:97:3492:-250.972,0,-302.878	1/1:79:1,78:1:36:78:2795:-248.191,-20.1831,0	1/1:77:0,77:0:0:77:2772:-249.72,-23.1793,0	0/1:206:100,106:100:3575:106:3785:-278.835,0,-259.945	1/1:127:0,127:0:0:127:4568:-411.283,-38.2308,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:73:0,73:0:0:73:2608:-234.968,-21.9752,0	0/1:53:32,21:32:1144:21:756:-52.4126,0,-87.3149	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:160:0,160:0:0:160:5752:-517.793,-48.1648,0	0/1:74:34,40:34:1208:40:1440:-107.622,0,-86.7499	1/1:94:0,94:0:0:94:3360:-302.612,-28.2968,0	1/1:161:0,161:0:0:161:5766:-519.053,-48.4658,0	1/1:92:0,92:0:0:92:3295:-296.768,-27.6948,0	1/1:117:0,117:0:0:117:4199:-378.09,-35.2205,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:183:0,183:0:0:183:6551:-589.672,-55.0885,0	0/1:90:62,28:62:2211:28:1004:-63.5832,0,-172.162	1/1:262:0,262:0:0:262:9387:-844.79,-78.8699,0	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	1/1:81:0,81:0:0:81:2906:-261.774,-24.3834,0	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:39:21,18:21:756:18:648:-46.9117,0,-56.6271	0/1:41:28,13:28:982:13:468:-30.1174,0,-76.3494	1/1:119:0,119:0:0:119:4266:-384.117,-35.8226,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0
chr02	14801597	.	T	A	18926.5	PASS	AB=0.506732;ABP=3.88747;AC=29;AF=0.154255;AN=188;AO=1133;CIGAR=1X;DP=9751;DPB=9751;DPRA=0.878792;EPP=2463.29;EPPR=18701.6;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=59.9873;NS=94;NUMALT=1;ODDS=3.56626;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40678;QR=309192;RO=8615;RPL=1133;RPP=2463.29;RPPR=18701.6;RPR=0;RUN=1;SAF=0;SAP=2463.29;SAR=1133;SRF=0;SRP=18710.2;SRR=8615;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.008	0/0:289:289,0:289:10354:0:0:0,-86.9977,-931.708	0/0:261:261,0:261:9343:0:0:0,-78.5688,-840.829	0/1:85:28,57:28:1008:57:2040:-158.284,0,-65.4488	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9624	0/0:189:189,0:189:6750:0:0:0,-56.8947,-607.572	0/0:136:136,0:136:4888:0:0:0,-40.9401,-440.07	0/0:163:163,0:163:5856:0:0:0,-49.0679,-526.959	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	0/1:14:7,7:7:252:7:244:-18.085,0,-18.8145	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:33:19,14:19:680:14:504:-35.7641,0,-51.5952	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:281:155,126:155:5568:126:4528:-323.096,0,-416.652	0/1:147:68,79:68:2440:79:2840:-211.586,0,-175.604	0/0:276:276,0:276:9897:0:0:0,-83.0843,-890.667	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:195:94,101:94:3361:101:3632:-268.383,0,-244.004	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/0:385:384,1:384:13774:1:36:0,-112.298,-1235.83	0/0:248:247,0:247:8876:0:0:0,-74.3544,-798.499	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:266:266,0:266:9560:0:0:0,-80.074,-860.35	0/0:141:141,0:141:5064:0:0:0,-42.4452,-455.903	0/1:101:47,54:47:1692:54:1944:-144.832,0,-122.163	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:128:128,0:128:4600:0:0:0,-38.5318,-414.162	0/0:311:311,0:311:11168:0:0:0,-93.6203,-1005	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:170:170,0:170:6116:0:0:0,-51.1751,-550.537	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:192:192,0:192:6896:0:0:0,-57.7978,-620.515	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/0:160:159,1:159:5720:1:36:0,-44.5665,-509.866	0/1:138:70,68:70:2505:68:2431:-177.503,0,-184.158	0/0:290:289,1:289:10380:1:36:0,-83.7004,-930.518	0/0:186:186,0:186:6680:0:0:0,-55.9916,-601.274	0/0:130:130,0:130:4680:0:0:0,-39.1339,-421.358	0/0:283:283,0:283:10153:0:0:0,-85.1915,-913.695	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:203:203,0:203:7293:0:0:0,-61.1091,-656.415	0/0:40:39,0:39:1400:0:0:0,-11.7402,-125.939	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:131:66,65:66:2368:65:2332:-170.705,0,-173.943	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:102:69,33:69:2484:33:1179:-75.7122,0,-193.108	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:229:229,0:229:8198:0:0:0,-68.9359,-737.829	0/1:213:99,114:99:3564:114:4092:-304.345,0,-256.847	0/0:79:78,1:78:2808:1:32:0,-20.5821,-249.759	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/1:209:108,101:108:3876:101:3624:-263.449,0,-286.119	0/0:128:128,0:128:4566:0:0:0,-38.5318,-411.104	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:73:73,0:73:2609:0:0:0,-21.9752,-235.056	0/1:52:21,31:21:756:31:1116:-85.0981,0,-52.7137	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:161:161,0:161:5765:0:0:0,-48.4658,-518.963	0/1:77:42,35:42:1493:35:1256:-90.166,0,-111.483	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:162:162,0:162:5809:0:0:0,-48.7669,-522.92	0/0:94:94,0:94:3353:0:0:0,-28.2968,-301.986	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:183:183,0:183:6584:0:0:0,-55.0885,-592.636	0/1:93:29,64:29:1040:64:2300:-179.265,0,-65.9186	0/0:268:268,0:268:9584:0:0:0,-80.676,-862.508	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:40:21,19:21:756:19:684:-49.8491,0,-56.326	0/1:40:13,27:13:468:27:972:-75.7567,0,-30.4184	0/0:127:126,0:126:4524:0:0:0,-37.9298,-406.966	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713
chr02	14801603	.	T	C	18955.4	PASS	AB=0.510332;ABP=5.07447;AC=29;AF=0.154255;AN=188;AO=1145;CIGAR=1X;DP=9689;DPB=9689;DPRA=0.960934;EPP=2489.35;EPPR=18553.9;GTI=1;LEN=1;MEANALT=1.02703;MQM=60;MQMR=59.9909;NS=94;NUMALT=1;ODDS=2.92075;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40918;QR=300532;RO=8543;RPL=1145;RPP=2489.35;RPPR=18553.9;RPR=0;RUN=1;SAF=0;SAP=2489.35;SAR=1145;SRF=0;SRP=18553.9;SRR=8543;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:79:79,0:79:2768:0:0:0,-23.7814,-249.357	0/0:119:119,0:119:4152:0:0:0,-35.8226,-373.851	0/0:283:283,0:283:9892:0:0:0,-85.1915,-890.227	0/0:263:263,0:263:9296:0:0:0,-79.1709,-836.609	0/1:85:28,57:28:989:57:2048:-159.004,0,-63.7345	0/1:42:21,21:21:741:21:741:-54.3683,0,-54.3683	0/0:189:189,0:189:6663:0:0:0,-56.8947,-599.748	0/0:133:133,0:133:4697:0:0:0,-40.037,-422.888	0/0:161:161,0:161:5639:0:0:0,-48.4658,-507.625	0/0:106:106,0:106:3668:0:0:0,-31.9092,-330.32	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.821	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:32:16,15:16:561:15:540:-39.2448,0,-41.1259	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:41:41,0:41:1442:0:0:0,-12.3422,-130.072	0/1:33:19,14:19:680:14:504:-35.7641,0,-51.5952	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:281:154,127:154:5310:127:4549:-324.985,0,-393.443	0/1:146:66,80:66:2296:80:2872:-214.766,0,-162.946	0/0:275:275,0:275:9690:0:0:0,-82.7832,-872.053	0/0:92:92,0:92:3289:0:0:0,-27.6948,-296.228	0/1:194:94,100:94:3323:100:3558:-262.026,0,-240.886	0/0:116:116,0:116:4070:0:0:0,-34.9195,-366.483	0/0:384:383,1:383:13554:1:36:0,-111.997,-1216.05	0/0:249:249,0:249:8786:0:0:0,-74.9565,-790.728	0/0:25:25,0:25:866:0:0:0,-7.52575,-78.2514	0/0:259:258,1:258:9090:1:21:0,-75.8668,-815.978	0/0:140:140,0:140:4914:0:0:0,-42.1442,-442.411	0/1:102:48,54:48:1713:54:1944:-144.531,0,-123.749	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:30:30,0:30:1053:0:0:0,-9.0309,-95.0786	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2943	0/0:129:128,1:128:4441:1:36:0,-35.2346,-396.261	0/0:307:307,0:307:10817:0:0:0,-92.4162,-973.434	0/1:25:13,12:13:441:12:430:-31.5144,0,-32.4875	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:170:170,0:170:6035:0:0:0,-51.1751,-543.252	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/0:189:189,0:189:6555:0:0:0,-56.8947,-590.031	0/0:46:46,0:46:1626:0:0:0,-13.8474,-146.625	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/0:158:157,1:157:5560:1:36:0,-43.9645,-495.822	0/1:142:71,71:71:2518:71:2544:-186.464,0,-184.123	0/0:289:288,1:288:10081:1:36:0,-83.3994,-903.627	0/0:186:186,0:186:6507:0:0:0,-55.9916,-585.713	0/0:129:129,0:129:4568:0:0:0,-38.8329,-411.283	0/0:283:283,0:283:9918:0:0:0,-85.1915,-892.566	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/0:199:199,0:199:6959:0:0:0,-59.905,-626.374	0/0:38:38,0:38:1326:0:0:0,-11.4391,-119.636	0/1:26:13,13:13:449:13:453:-33.2728,0,-32.9107	0/1:129:63,66:63:2218:66:2350:-172.923,0,-161.049	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/0:43:43,0:43:1488:0:0:0,-12.9443,-134.205	0/1:100:67,33:67:2385:33:1168:-75.3221,0,-184.803	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:227:227,0:227:8034:0:0:0,-68.3338,-723.082	0/1:211:99,112:99:3500:112:4005:-297.12,0,-251.689	0/0:77:76,1:76:2674:1:32:0,-19.98,-237.705	0/0:78:78,0:78:2763:0:0:0,-23.4803,-248.907	0/1:208:107,101:107:3776:101:3574:-259.251,0,-277.422	0/0:125:125,0:125:4431:0:0:0,-37.6287,-398.96	0/0:17:16,1:16:557:1:36:0,-1.51923,-46.8573	0/0:72:72,0:72:2519:0:0:0,-21.6742,-226.959	0/1:53:21,32:21:748:32:1148:-87.6752,0,-51.6907	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:160:160,0:160:5698:0:0:0,-48.1648,-512.938	0/1:77:42,35:42:1482:35:1237:-88.453,0,-110.491	0/0:94:94,0:94:3278:0:0:0,-28.2968,-295.231	0/0:162:162,0:162:5703:0:0:0,-48.7669,-513.386	0/0:92:92,0:92:3214:0:0:0,-27.6948,-289.477	0/0:118:118,0:118:4108:0:0:0,-35.5215,-369.901	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:183:181,2:181:6286:2:72:0,-48.2518,-558.995	0/1:91:28,63:28:989:63:2268:-176.988,0,-61.9283	0/0:263:263,0:263:9312:0:0:0,-79.1709,-838.046	0/0:74:74,0:74:2611:0:0:0,-22.2762,-235.234	0/0:26:26,0:26:891:0:0:0,-7.82678,-80.4967	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	0/0:82:82,0:82:2887:0:0:0,-24.6845,-260.064	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/0:47:47,0:47:1650:0:0:0,-14.1484,-148.784	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:40:21,19:21:756:19:684:-49.8491,0,-56.326	0/1:40:12,28:12:432:28:1008:-78.9952,0,-27.18	0/0:124:124,0:124:4357:0:0:0,-37.3277,-392.304	0/0:55:55,0:55:1931:0:0:0,-16.5566,-174.061
chr02	14818058	.	C	T	17673.5	PASS	AB=0.514411;ABP=6.70297;AC=30;AF=0.159574;AN=188;AO=1068;CIGAR=1X;DP=8182;DPB=8182;DPRA=0.989078;EPP=2322.14;EPPR=15448.7;GTI=1;LEN=1;MEANALT=1;MQM=59.6367;MQMR=59.9847;NS=94;NUMALT=1;ODDS=3.57187;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38116;QR=254634;RO=7113;RPL=0;RPP=2322.14;RPPR=15448.7;RPR=1068;RUN=1;SAF=1068;SAP=2322.14;SAR=0;SRF=7113;SRP=15448.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/0:172:172,0:172:6148:0:0:0,-51.7772,-553.421	0/0:262:261,1:261:9313:1:36:0,-75.2716,-834.538	0/1:24:12,12:12:428:12:432:-31.9965,0,-31.6341	0/1:26:7,19:7:244:19:684:-54.0635,0,-14.4726	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:144:144,0:144:5132:0:0:0,-43.3483,-461.655	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:127:127,0:127:4529:0:0:0,-38.2308,-407.777	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.771	0/0:66:65,1:65:2327:1:36:0,-16.2697,-206.091	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/1:45:24,21:24:864:21:756:-54.7463,0,-64.5362	0/1:51:24,27:24:864:27:972:-72.4454,0,-62.73	0/1:37:15,22:15:540:22:763:-57.8432,0,-37.7984	0/0:60:58,2:58:2076:2:72:0,-11.2251,-180.274	0/1:49:22,27:22:779:27:948:-70.8569,0,-55.6816	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:128:70,58:70:2512:58:2073:-148.304,0,-187.8	0/1:169:74,95:74:2656:95:3393:-254.589,0,-188.412	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.778	0/1:130:72,58:72:2580:58:2061:-146.564,0,-193.315	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:319:317,2:317:11326:2:72:0,-89.1918,-1012.3	0/0:175:174,0:174:6248:0:0:0,-52.3792,-562.053	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:245:245,0:245:8764:0:0:0,-73.7523,-788.75	0/0:132:132,0:132:4728:0:0:0,-39.736,-425.679	0/1:124:61,63:61:2192:63:2245:-164.352,0,-160.218	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:242:242,0:242:8652:0:0:0,-72.8493,-778.675	0/0:191:191,0:191:6856:0:0:0,-57.4967,-617.107	0/1:69:34,35:34:1216:35:1252:-92.1943,0,-88.9755	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:113:113,0:113:4036:0:0:0,-34.0164,-363.429	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.29	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:84:35,49:35:1252:49:1760:-133.395,0,-87.6986	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/1:96:62,34:62:2228:34:1216:-80.8219,0,-171.882	0/0:163:160,3:160:5728:3:108:0,-38.9927,-505.562	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.746	0/0:184:184,0:184:6536:0:0:0,-55.3895,-588.327	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:11:5,6:5:176:6:212:-16.1135,0,-12.8737	0/1:88:43,45:43:1540:45:1589:-116.803,0,-112.402	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.514	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.947	0/1:98:45,53:45:1611:53:1889:-140.785,0,-115.778	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:197:197,0:197:7060:0:0:0,-59.3029,-635.46	0/1:110:46,64:46:1648:64:2297:-173.859,0,-115.495	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:79:79,0:79:2793:0:0:0,-23.7814,-251.606	0/1:139:82,57:82:2944:57:2021:-140.313,0,-223.35	0/0:138:138,0:138:4960:0:0:0,-41.5421,-446.547	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.319	0/1:87:42,45:42:1508:45:1597:-117.828,0,-109.825	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/1:69:31,38:31:1096:38:1364:-102.272,0,-78.1789	0/0:125:125,0:125:4476:0:0:0,-37.6287,-403.009	0/0:163:163,0:163:5848:0:0:0,-49.0679,-526.428	0/0:54:52,2:52:1856:2:72:0,-9.4189,-160.483	0/0:97:96,1:96:3440:1:36:0,-25.6016,-306.215	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.722	0/1:88:35,53:35:1233:53:1885:-143.434,0,-84.7815	0/0:220:220,0:220:7880:0:0:0,-66.2266,-709.226	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:104:53,51:53:1896:51:1824:-133.129,0,-139.611	0/0:177:177,0:177:6348:0:0:0,-53.2823,-571.409	0/1:51:25,26:25:900:26:936:-69.0028,0,-65.9685	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145	0/0:110:109,1:109:3900:1:36:0,-29.515,-347.596	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:70:34,36:34:1220:36:1296:-95.8718,0,-89.0347	0/1:71:26,45:26:932:45:1607:-123.544,0,-62.8257	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:107:106,1:106:3816:1:36:0,-28.6119,-340.037
chr02	14818097	.	A	G	17126.7	PASS	AB=0.508424;ABP=4.25422;AC=30;AF=0.159574;AN=188;AO=1039;CIGAR=1X;DP=8173;DPB=8173;DPRA=0.899544;EPP=2259.17;EPPR=15492.1;GTI=1;LEN=1;MEANALT=1;MQM=59.7238;MQMR=59.9814;NS=94;NUMALT=1;ODDS=2.54076;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37077;QR=255563;RO=7133;RPL=1039;RPP=2259.17;RPPR=15492.1;RPR=0;RUN=1;SAF=1039;SAP=2259.17;SAR=0;SRF=7133;SRP=15492.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/0:177:177,0:177:6347:0:0:0,-53.2823,-571.319	0/0:266:265,1:265:9512:1:32:0,-76.8747,-852.834	0/1:24:12,12:12:432:12:417:-30.6355,0,-31.9965	0/1:27:7,20:7:252:20:716:-56.6399,0,-14.9011	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:146:146,0:146:5244:0:0:0,-43.9504,-471.725	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:67:66,1:66:2368:1:36:0,-16.5707,-209.78	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/1:46:24,22:24:851:22:784:-56.962,0,-63.0621	0/1:50:24,26:24:860:26:936:-69.508,0,-62.6703	0/1:39:18,21:18:648:21:752:-56.2599,0,-46.9117	0/0:61:59,2:59:2101:2:72:0,-11.5261,-182.521	0/1:49:23,26:23:824:26:932:-69.432,0,-59.7328	0/0:36:36,0:36:1272:0:0:0,-10.8371,-114.78	0/1:126:70,56:70:2508:56:1999:-142.251,0,-188.042	0/1:167:73,94:73:2620:94:3353:-251.658,0,-185.775	0/0:109:109,0:109:3897:0:0:0,-32.8123,-350.922	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.275	0/1:130:72,58:72:2588:58:2069:-147.336,0,-194.035	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:319:319,0:319:11434:0:0:0,-96.0286,-1028.87	0/0:175:175,0:175:6268:0:0:0,-52.6802,-564.214	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:245:245,0:245:8801:0:0:0,-73.7523,-792.071	0/0:133:133,0:133:4754:0:0:0,-40.037,-428.015	0/1:117:59,58:59:2124:58:2080:-152.25,0,-156.208	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:239:239,0:239:8588:0:0:0,-71.9462,-772.911	0/0:190:190,0:190:6797:0:0:0,-57.1957,-611.801	0/1:66:34,32:34:1220:32:1113:-80.5937,0,-90.2388	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:112:112,0:112:4015:0:0:0,-33.7154,-361.538	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:42:42,0:42:1485:0:0:0,-12.6433,-133.938	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.157	0/1:83:35,48:35:1260:48:1724:-130.458,0,-88.72	0/0:81:81,0:81:2880:0:0:0,-24.3834,-259.435	0/1:94:61,33:61:2187:33:1176:-77.8252,0,-168.79	0/0:164:161,3:161:5780:3:108:0,-39.2937,-510.237	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:116:116,0:116:4168:0:0:0,-34.9195,-375.301	0/0:183:183,0:183:6549:0:0:0,-55.0885,-589.491	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:101:101,0:101:3613:0:0:0,-30.404,-325.374	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/1:88:43,45:43:1548:45:1620:-119.595,0,-112.345	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.043	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.825	0/1:96:46,50:46:1644:50:1777:-131.312,0,-119.35	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:199:199,0:199:7099:0:0:0,-59.905,-638.967	0/1:106:46,60:46:1633:60:2130:-160.042,0,-115.348	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.47	0/1:138:82,56:82:2948:56:2000:-138.727,0,-224.008	0/0:139:139,0:139:4988:0:0:0,-41.8432,-449.065	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/1:86:42,44:42:1508:44:1584:-116.962,0,-110.126	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/1:66:29,37:29:1036:37:1328:-99.9364,0,-73.6859	0/0:125:125,0:125:4496:0:0:0,-37.6287,-404.806	0/0:160:159,0:159:5671:0:0:0,-47.8638,-510.145	0/0:54:52,2:52:1864:2:72:0,-9.4189,-161.203	0/0:96:95,1:95:3397:1:36:0,-25.3006,-302.345	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/1:89:36,53:36:1281:53:1900:-144.484,0,-88.7996	0/0:221:221,0:221:7916:0:0:0,-66.5276,-712.464	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.728	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:104:53,51:53:1900:51:1824:-133.129,0,-139.971	0/0:178:177,1:177:6360:1:36:0,-49.9851,-568.889	0/1:50:24,26:24:860:26:887:-64.9899,0,-62.6703	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:111:111,0:111:3973:0:0:0,-33.4143,-357.759	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:68:33,35:33:1188:35:1256:-92.8752,0,-86.7586	0/1:68:25,43:25:896:43:1540:-118.422,0,-60.4903	0/0:81:81,0:81:2885:0:0:0,-24.3834,-259.885	0/0:108:107,1:107:3843:1:36:0,-28.913,-342.466
chr02	14966744	.	G	T	26630.7	PASS	AB=0.455325;ABP=65.6791;AC=42;AF=0.223404;AN=188;AO=1672;CIGAR=1X;DP=9173;DPB=9173;DPRA=0.989117;EPP=3633.71;EPPR=16286.9;GTI=4;LEN=1;MEANALT=1.02083;MQM=59.5287;MQMR=59.9005;NS=94;NUMALT=1;ODDS=0.271464;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59691;QR=267979;RO=7499;RPL=1672;RPP=3633.71;RPPR=16286.9;RPR=0;RUN=1;SAF=1672;SAP=3633.71;SAR=0;SRF=7499;SRP=16286.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6185	0/0:185:185,0:185:6619:0:0:0,-55.6905,-595.764	0/1:92:53,39:53:1871:39:1396:-98.2337,0,-140.969	0/0:257:254,3:254:9080:3:94:0,-68.6009,-807.956	0/1:50:28,22:28:1008:22:788:-56.1917,0,-75.9849	0/1:44:28,16:28:1004:16:576:-38.919,0,-77.4259	0/1:91:49,42:49:1760:42:1508:-108.6,0,-131.29	0/0:211:211,0:211:7555:0:0:0,-63.5173,-679.975	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.595	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:71:35,36:35:1228:36:1283:-94.3737,0,-89.4464	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.224	0/1:70:32,38:32:1135:38:1341:-99.9007,0,-81.3502	0/1:56:25,31:25:900:31:1116:-83.8727,0,-64.4633	0/1:47:26,21:26:932:21:747:-53.3943,0,-70.0489	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.278	0/0:58:56,2:56:1996:2:68:0,-11.0158,-173.382	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.816	0/1:266:163,103:163:5847:103:3671:-250.52,0,-446.266	0/1:123:68,55:68:2426:55:1980:-141.192,0,-181.568	0/0:139:139,0:139:4992:0:0:0,-41.8432,-449.42	0/0:121:117,4:117:4176:4:144:0,-23.1119,-362.705	0/0:133:128,5:128:4592:5:176:0,-23.852,-397.257	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:330:330,0:330:11771:0:0:0,-99.3399,-1059.25	0/0:263:263,0:263:9384:0:0:0,-79.1709,-844.512	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:237:138,99:138:4944:99:3539:-247.346,0,-373.753	0/1:147:92,55:92:3288:55:1964:-132.784,0,-251.889	0/1:137:92,45:92:3304:45:1605:-103.452,0,-256.337	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2432	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7889	1/1:2:0,2:0:0:2:72:-6.74593,-0.60206,0	0/1:161:87,74:87:3115:74:2647:-189.989,0,-232.024	0/1:149:84,65:84:3016:65:2330:-165.092,0,-226.817	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.221	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:156:156,0:156:5592:0:0:0,-46.9607,-503.39	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:182:94,88:94:3350:88:3147:-228.632,0,-246.923	0/1:73:37,36:37:1328:36:1279:-93.3297,0,-97.847	0/1:64:26,38:26:909:38:1352:-102.714,0,-62.8575	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/1:114:57,57:57:2048:57:2052:-150.618,0,-150.266	0/0:213:213,0:213:7612:0:0:0,-64.1194,-685.043	0/0:97:97,0:97:3445:0:0:0,-29.1999,-310.263	0/0:206:206,0:206:7354:0:0:0,-62.0122,-661.907	0/1:132:76,56:76:2716:56:1996:-140.144,0,-204.942	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.548	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:9:4,5:4:140:5:180:-13.8236,0,-10.2296	0/1:113:55,58:55:1959:58:2045:-150.297,0,-142.568	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:25:14,11:14:481:11:396:-28.457,0,-36.0893	0/1:109:78,31:78:2789:31:1108:-67.1931,0,-218.436	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:319:318,0:318:11390:0:0:0,-95.7275,-1024.59	0/1:205:100,104:100:3592:104:3698:-271.241,0,-261.715	0/0:91:90,1:90:3236:1:36:0,-23.7955,-287.862	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.161	0/1:188:108,80:108:3864:80:2825:-197.648,0,-291.362	0/0:111:111,0:111:3974:0:0:0,-33.4143,-357.843	0/1:23:7,16:7:248:16:576:-45.2406,0,-15.7405	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.471	0/1:75:37,38:37:1320:38:1364:-100.473,0,-96.5247	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.092	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8011	0/0:165:163,2:163:5818:2:72:0,-42.8332,-516.888	0/0:180:180,0:180:6432:0:0:0,-54.1854,-578.966	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.497	0/0:121:119,2:119:4252:2:72:0,-29.5879,-375.697	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6382	0/0:104:104,0:104:3717:0:0:0,-31.3071,-334.73	0/1:103:51,52:51:1818:52:1864:-137.005,0,-132.887	0/0:167:167,0:167:5969:0:0:0,-50.272,-537.31	0/0:92:91,1:91:3242:1:36:0,-24.0965,-288.403	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.538	0/0:101:101,0:101:3585:0:0:0,-30.404,-322.858	0/1:136:64,72:64:2279:72:2587:-192.098,0,-164.432	0/1:40:23,17:23:812:17:593:-41.6428,0,-61.3566	0/1:81:45,36:45:1607:36:1280:-91.0856,0,-120.536	0/0:65:65,0:65:2322:0:0:0,-19.5669,-209.169	0/1:24:12,12:12:419:12:432:-31.9751,0,-30.7894	0/1:79:42,37:42:1508:37:1328:-95.6743,0,-112.227	0/1:59:17,42:17:600:42:1504:-117.883,0,-36.5684	0/0:143:143,0:143:5088:0:0:0,-43.0473,-458.062	0/0:100:100,0:100:3537:0:0:0,-30.103,-318.451
chr02	14967924	.	CATCC	TATCC,TATCA	154127	PASS	AB=0.497104,0.496422;ABP=3.22412,3.33658;AC=147,41;AF=0.781915,0.218085;AN=188;AO=5568,1470;CIGAR=1X4M,1X3M1X;DP=7072;DPB=7071.8;DPRA=0,1.07939;EPP=12024.4,3160.43;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=1.85106,2.38776;MQM=59.986,59.9782;MQMR=60;NS=94;NUMALT=2;ODDS=0.453607;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=199474,52235;QR=34;RO=1;RPL=7,4;RPP=12033,3160.43;RPPR=5.18177;RPR=5561,1466;RUN=1,1;SAF=5567,1470;SAP=12085.1,3195.07;SAR=1,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44,0:0:0:44,0:1580,0:-142.492,-13.2453,0,-142.492,-13.2453,-142.492	1/1:47:0,47,0:0:0:47,0:1673,0:-150.855,-14.1484,0,-150.855,-14.1484,-150.855	1/2:137:0,61,76:0:0:61,76:2184,2707:-399.086,-220.98,-202.617,-178.463,0,-155.585	1/1:239:0,238,0:0:0:238,0:8537,0:-768.114,-71.6451,0,-768.114,-71.6451,-768.114	1/2:32:0,15,17:0:0:15,17:540,595:-92.826,-48.7601,-44.2446,-44.4211,0,-39.3036	1/2:48:0,14,34:0:0:14,34:492,1223:-140.184,-100.142,-95.9276,-40.396,0,-30.161	1/2:93:0,40,53:0:0:40,53:1436,1876:-270.298,-153.158,-141.117,-117.496,0,-101.542	1/1:70:0,70,0:0:0:70,0:2497,0:-224.981,-21.0721,0,-224.981,-21.0721,-224.981	1/1:93:0,92,0:0:0:92,0:3289,0:-295.868,-27.6948,0,-295.868,-27.6948,-295.868	1/1:67:0,67,0:0:0:67,0:2369,0:-213.465,-20.169,0,-213.465,-20.169,-213.465	1/1:67:0,66,0:0:0:66,0:2368,0:-213.018,-19.868,0,-213.018,-19.868,-213.018	1/2:91:0,42,47:0:0:42,47:1499,1676:-258.838,-136.635,-123.992,-122.224,0,-108.075	1/1:66:0,66,0:0:0:66,0:2376,0:-214.097,-19.868,0,-214.097,-19.868,-214.097	1/2:50:0,27,23:0:0:27,23:972,821:-146.601,-67.2891,-59.1613,-79.6701,0,-72.7464	1/2:63:0,29,33:0:0:29,33:1044,1184:-181.81,-96.6232,-87.8934,-85.2333,0,-75.2993	1/2:40:0,30,10:0:0:30,10:1080,350:-116.955,-28.8254,-19.7945,-88.4823,0,-85.472	1/1:23:0,22,0:0:0:22,0:792,0:-71.2458,-6.62266,0,-71.2458,-6.62266,-71.2458	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:35:0,35,0:0:0:35,0:1244,0:-112.263,-10.5361,0,-112.263,-10.5361,-112.263	1/2:88:0,31,56:0:0:31,56:1112,2006:-254.297,-163.596,-154.264,-90.6996,0,-73.8419	1/2:90:0,56,34:0:0:56,34:2012,1200:-262.21,-98.0702,-81.2125,-164.495,0,-154.26	1/1:171:0,171,0:0:0:171,0:6101,0:-549.183,-51.4761,0,-549.183,-51.4761,-549.183	1/1:102:0,98,3:0:0:98,3:3501,108:-314.94,-29.5009,0,-306.127,-20.6887,-305.224	1/1:30:0,29,1:0:0:29,1:1044,36:-93.915,-8.72987,0,-90.9776,-5.43263,-90.6765	1/1:124:0,123,0:0:0:123,0:4385,0:-394.522,-37.0267,0,-394.522,-37.0267,-394.522	1/1:207:0,205,1:0:0:205,1:7316,22:-658.271,-61.7112,0,-656.593,-60.0272,-656.292	1/1:221:0,220,1:0:0:220,1:7912,36:-711.74,-66.2266,0,-708.803,-62.9294,-708.501	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/2:137:0,55,82:0:0:55,82:1976,2914:-399.011,-237.81,-221.254,-161.558,0,-136.874	1/2:121:0,58,63:0:0:58,63:2071,2240:-351.744,-182.9,-165.44,-169.2,0,-150.235	1/2:99:0,54,45:0:0:54,45:1929,1598:-287.837,-130.564,-114.308,-157.629,0,-144.083	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:18:0,11,7:0:0:11,7:392,249:-52.6012,-20.6482,-17.3369,-32.3087,0,-30.2015	1/2:23:0,16,6:0:0:16,6:576,216:-64.6232,-17.6245,-12.808,-46.9987,0,-45.1925	1/2:178:0,98,80:0:0:98,80:3516,2853:-519.716,-232.925,-203.424,-287.148,0,-263.066	1/2:146:0,76,66:0:0:76,66:2724,2335:-412.39,-190.22,-167.342,-222.203,0,-202.335	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:142:0,142,0:0:0:142,0:5096,0:-458.782,-42.7463,0,-458.782,-42.7463,-458.782	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/2:112:0,81,30:0:0:81,30:2912,1043:-322.453,-84.8757,-60.4923,-237.655,0,-228.625	1/2:39:1,20,18:1:34:20,18:720,648:-108.583,-50.1355,-46.8718,-56.0103,0,-53.3488	1/2:63:0,30,32:0:0:30,32:1080,1151:-182.03,-93.9074,-84.8765,-88.1225,0,-78.4896	1/1:122:0,121,0:0:0:121,0:4339,0:-390.403,-36.4246,0,-390.403,-36.4246,-390.403	1/2:100:0,46,53:0:0:46,53:1656,1878:-288.117,-152.993,-139.146,-135.131,0,-119.176	1/1:131:0,131,0:0:0:131,0:4689,0:-422.169,-39.4349,0,-422.169,-39.4349,-422.169	1/1:72:0,72,0:0:0:72,0:2592,0:-233.528,-21.6742,0,-233.528,-21.6742,-233.528	1/1:70:0,70,0:0:0:70,0:2501,0:-225.341,-21.0721,0,-225.341,-21.0721,-225.341	1/2:68:0,27,40:0:0:27,40:972,1423:-195.327,-116.015,-107.887,-79.3584,0,-67.3172	1/2:13:0,5,8:0:0:5,8:176,282:-37.6409,-23.3131,-21.8079,-14.6799,0,-12.2716	1/1:111:0,111,0:0:0:111,0:3954,0:-356.05,-33.4143,0,-356.05,-33.4143,-356.05	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/2:4:0,2,2:0:0:2,2:72,72:-12.0007,-6.23466,-5.6326,-6.12296,0,-5.5209	1/2:110:0,44,65:0:0:44,65:1580,2319:-318.026,-189.138,-175.892,-128.979,0,-109.412	1/1:47:0,47,0:0:0:47,0:1692,0:-152.567,-14.1484,0,-152.5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chr02	14968017	.	T	C	193068	PASS	AB=0.527965;ABP=32.2796;AC=148;AF=0.795699;AN=186;AO=9020;CIGAR=1X;DP=11080;DPB=11080;DPRA=0;EPP=19563.6;EPPR=4435.05;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.998;MQMR=60;NS=93;NUMALT=1;ODDS=2.02141;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=320374;QR=73338;RO=2057;RPL=0;RPP=19589.7;RPPR=4469.73;RPR=9020;RUN=1;SAF=3;SAP=19563.6;SAR=9017;SRF=4;SRP=4435.05;SRR=2053;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1769:-159.491,-15.0515,0	1/1:168:0,168:0:0:168:5991:-539.298,-50.573,0	0/1:135:64,71:64:2287:71:2534:-187.672,0,-165.452	1/1:236:0,236:0:0:236:8381:-754.3,-71.0431,0	0/1:72:35,37:35:1252:37:1319:-97.337,0,-91.3109	0/1:26:8,18:8:279:18:626:-48.8365,0,-17.6208	0/1:101:33,68:33:1184:68:2415:-187.202,0,-76.4643	1/1:181:0,181:0:0:181:6404:-576.453,-54.4864,0	1/1:135:0,135:0:0:135:4758:-428.38,-40.6391,0	1/1:173:0,173:0:0:173:6183:-556.568,-52.0782,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:58:31,27:31:1116:27:964:-69.6171,0,-83.292	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:55:25,30:25:892:30:1055:-78.7034,0,-64.043	0/1:52:23,29:23:806:29:1014:-75.9164,0,-57.2047	0/1:54:29,25:29:1040:25:883:-63.5318,0,-77.6587	1/1:64:0,64:0:0:64:2279:-205.372,-19.2659,0	1/1:54:0,54:0:0:54:1907:-171.905,-16.2556,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:190:89,101:89:3177:101:3575:-264.763,0,-228.957	0/1:178:73,105:73:2600:105:3707:-280.25,0,-180.663	1/1:276:1,274:1:36:274:9766:-875.293,-79.5448,0	1/1:123:1,121:1:36:121:4304:-384.013,-33.4123,0	1/1:269:13,256:13:464:256:9109:-777.694,-38.8796,0	1/1:127:0,126:0:0:126:4430:-398.653,-37.9298,0	1/1:388:1,387:1:36:387:13745:-1233.24,-113.201,0	1/1:278:0,278:0:0:278:9835:-885.101,-83.6863,0	1/1:34:1,33:1:36:33:1172:-102.189,-6.63675,0	0/1:342:151,191:151:5399:191:6768:-506.243,0,-383.089	0/1:153:63,90:63:2241:90:3228:-244.684,0,-155.894	0/1:126:69,57:69:2472:57:1999:-142.249,0,-184.804	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:188:85,103:85:3018:103:3605:-268.065,0,-215.258	0/1:449:188,261:188:6607:261:9267:-698.844,0,-459.553	1/1:43:0,43:0:0:43:1531:-138.082,-12.9443,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:160:0,160:0:0:160:5688:-512.042,-48.1648,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:163:93,70:93:3312:70:2504:-176.545,0,-249.229	0/1:64:34,30:34:1220:30:1068:-77.1661,0,-90.8409	0/1:47:26,21:26:928:21:748:-53.4969,0,-69.6898	1/1:70:0,70:0:0:70:2483:-223.722,-21.0721,0	0/1:158:84,74:84:2973:74:2610:-187.586,0,-220.238	1/1:256:0,256:0:0:256:9114:-820.238,-77.0637,0	1/1:202:0,202:0:0:202:7188:-646.979,-60.8081,0	1/1:202:0,202:0:0:202:7190:-647.157,-60.8081,0	0/1:234:116,118:116:4168:118:4184:-306.302,0,-304.86	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:127:0,127:0:0:127:4556:-410.205,-38.2308,0	1/1:33:0,33:0:0:33:1149:-103.712,-9.93399,0	0/1:8:2,6:2:68:6:208:-16.6508,0,-4.04947	0/1:104:63,41:63:2264:41:1460:-100.381,0,-172.715	1/1:81:0,81:0:0:81:2871:-258.626,-24.3834,0	.:.:.:.:.:.:.:.	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:83:45,38:45:1616:38:1355:-97.2642,0,-120.745	1/1:99:1,98:1:36:98:3477:-309.544,-26.2037,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:381:0,381:0:0:381:13527:-1217.23,-114.692,0	0/1:159:64,95:64:2300:95:3373:-255.922,0,-159.397	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	1/1:124:0,124:0:0:124:4354:-392.036,-37.3277,0	0/1:325:158,167:158:5609:167:5933:-436.246,0,-407.098	1/1:361:3,358:3:108:358:12773:-1139.32,-98.5967,0	0/1:12:5,7:5:161:7:248:-19.0518,0,-11.1942	1/1:95:0,95:0:0:95:3374:-303.877,-28.5979,0	0/1:84:41,43:41:1476:43:1519:-111.716,0,-107.85	1/1:29:0,29:0:0:29:1024:-92.4726,-8.72987,0	1/1:155:0,155:0:0:155:5489:-494.142,-46.6597,0	0/1:100:34,66:34:1220:66:2343:-181.025,0,-80.0038	1/1:214:0,214:0:0:214:7559:-680.353,-64.4204,0	1/1:214:0,214:0:0:214:7612:-685.12,-64.4204,0	1/1:148:0,148:0:0:148:5263:-473.808,-44.5524,0	1/1:117:2,115:2:72:115:4103:-362.619,-28.3838,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:124:0,124:0:0:124:4428:-398.693,-37.3277,0	0/1:179:74,105:74:2644:105:3756:-284.356,0,-184.323	1/1:276:0,276:0:0:276:9841:-885.638,-83.0843,0	1/1:120:0,120:0:0:120:4279:-385.289,-36.1236,0	1/1:39:0,39:0:0:39:1375:-124.048,-11.7402,0	1/1:79:0,79:0:0:79:2798:-252.061,-23.7814,0	0/1:143:70,73:70:2507:73:2577:-189.129,0,-182.834	0/1:44:21,23:21:739:23:819:-60.7862,0,-53.5871	0/1:60:28,32:28:1008:32:1148:-85.568,0,-72.9746	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:15:11,4:11:392:4:135:-7.96706,0,-31.1046	0/1:52:34,18:34:1216:18:636:-41.9145,0,-94.093	0/1:76:53,23:53:1891:23:815:-50.7925,0,-147.589	1/1:98:0,98:0:0:98:3478:-313.233,-29.5009,0	1/1:82:0,82:0:0:82:2904:-261.595,-24.6845,0
chr02	14996574	.	G	T	36823.6	PASS	AB=0.500816;ABP=3.03512;AC=40;AF=0.212766;AN=188;AO=2165;CIGAR=1X;DP=9492;DPB=9492;DPRA=1.31981;EPP=4617.79;EPPR=15417.4;GTI=2;LEN=1;MEANALT=1.08889;MQM=59.9931;MQMR=59.9984;NS=94;NUMALT=1;ODDS=1.21973;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77413;QR=260994;RO=7313;RPL=10;RPP=4617.79;RPPR=15417.4;RPR=2155;RUN=1;SAF=2165;SAP=4704.25;SAR=0;SRF=7313;SRP=15883;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:86:86,0:86:3083:0:0:0,-25.8886,-277.697	0/1:194:90,104:90:3215:104:3721:-276.69,0,-231.173	0/0:270:269,1:269:9625:1:36:0,-77.6798,-862.603	0/1:37:22,15:22:788:15:540:-37.7984,0,-60.1067	0/1:78:36,42:36:1292:42:1512:-112.894,0,-93.1034	0/1:143:61,82:61:2188:82:2928:-220.708,0,-154.137	0/0:109:106,0:106:3792:0:0:0,-31.9092,-341.119	0/0:113:113,0:113:4006:0:0:0,-34.0164,-360.732	0/0:89:89,0:89:3169:0:0:0,-26.7917,-285.434	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:204:103,101:103:3663:101:3619:-264.504,0,-268.462	0/0:104:104,0:104:3715:0:0:0,-31.3071,-334.552	0/1:55:26,29:26:932:29:1044:-77.7182,0,-67.6422	0/1:101:56,45:56:1999:45:1588:-112.804,0,-149.779	0/1:66:40,26:40:1418:26:932:-64.3309,0,-108.048	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:314:152,162:152:5425:162:5787:-426.419,0,-393.856	0/1:225:102,123:102:3647:123:4416:-329.879,0,-260.702	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:141:141,0:141:5044:0:0:0,-42.4452,-454.106	0/0:95:88,7:88:3136:7:252:0,-5.56889,-259.438	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.213	0/0:202:202,0:202:7203:0:0:0,-60.8081,-648.325	0/0:218:215,1:215:7655:1:36:0,-61.784,-685.39	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:301:150,151:150:5363:151:5401:-395.61,0,-392.192	0/1:93:66,27:66:2359:27:960:-58.7205,0,-184.572	0/1:125:62,63:62:2211:63:2253:-165.403,0,-161.626	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:222:124,97:124:4440:97:3469:-245.573,0,-332.923	0/1:65:27,38:27:964:38:1352:-102.413,0,-67.5099	0/0:49:49,0:49:1739:0:0:0,-14.7505,-156.794	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:193:193,0:193:6902:0:0:0,-58.0988,-621.247	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:159:79,80:79:2815:80:2851:-208.964,0,-205.726	0/1:105:61,44:61:2167:44:1559:-108.993,0,-163.688	0/1:74:42,32:42:1504:32:1144:-80.9933,0,-113.378	0/0:126:126,0:126:4486:0:0:0,-37.9298,-403.91	0/1:125:68,57:68:2440:57:2030:-145.343,0,-182.226	0/0:154:152,2:152:5426:2:72:0,-39.5219,-481.633	0/0:106:106,0:106:3775:0:0:0,-31.9092,-339.95	0/0:105:105,0:105:3743:0:0:0,-31.6081,-337.071	0/1:117:51,66:51:1836:66:2368:-178.158,0,-130.3	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:137:137,0:137:4891:0:0:0,-41.2411,-440.343	0/0:98:98,0:98:3486:0:0:0,-29.5009,-313.952	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:188:91,96:91:3229:96:3400:-249.564,0,-234.18	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:84:41,43:41:1459:43:1540:-113.607,0,-106.319	0/0:94:92,2:92:3288:2:72:0,-21.4601,-289.303	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.828	0/1:182:84,98:84:2986:98:3507:-261.052,0,-214.185	0/0:81:78,3:78:2800:3:108:0,-14.3083,-242.16	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/1:207:119,88:119:4230:88:3142:-220.691,0,-318.568	0/0:141:140,0:140:4961:0:0:0,-42.1442,-446.281	0/1:45:26,19:26:936:19:680:-47.9828,0,-71.0131	0/0:114:114,0:114:4083:0:0:0,-34.3174,-367.655	0/1:34:14,20:14:500:20:716:-54.5327,0,-35.1012	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:137:136,0:136:4867:0:0:0,-40.9401,-437.823	0/1:71:33,38:33:1167:38:1360:-101.327,0,-83.9633	0/0:204:204,0:204:7230:0:0:0,-61.4101,-650.76	0/0:175:174,0:174:6202:0:0:0,-52.3792,-557.919	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:93:92,0:92:3276:0:0:0,-27.6948,-294.702	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:102:102,0:102:3638:0:0:0,-30.7051,-327.625	0/1:181:68,113:68:2436:113:4048:-310.02,0,-165.009	0/0:223:222,0:222:7905:0:0:0,-66.8287,-711.12	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/1:172:95,77:95:3377:77:2772:-197.943,0,-252.369	0/1:26:12,14:12:428:14:504:-37.8713,0,-31.032	0/1:98:48,50:48:1715:50:1794:-132.242,0,-125.134	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/1:36:24,12:24:856:12:428:-28.0217,0,-66.524	0/1:60:28,30:28:1008:30:1080:-79.6937,0,-73.2168	0/1:80:23,57:23:820:57:2036:-159.43,0,-50.0401	0/0:121:121,0:121:4301:0:0:0,-36.4246,-387.268	0/0:142:142,0:142:5056:0:0:0,-42.7463,-455.186
chr02	14996625	.	T	A	202587	PASS	AB=0.505462;ABP=4.24384;AC=146;AF=0.776596;AN=188;AO=9019;CIGAR=1X;DP=11398;DPB=11398;DPRA=40.8423;EPP=17574.8;EPPR=4737.27;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9816;MQMR=59.9857;NS=94;NUMALT=1;ODDS=3.33156;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=322044;QR=84110;RO=2376;RPL=8781;RPP=17574.8;RPPR=4737.27;RPR=238;RUN=1;SAF=0;SAP=19587.5;SAR=9019;SRF=0;SRP=5162.43;SRR=2376;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1349:-121.709,-11.4391,0	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	0/1:192:94,98:94:3336:98:3511:-258.401,0,-242.662	1/1:333:0,333:0:0:333:11926:-1073.19,-100.243,0	0/1:42:20,22:20:716:22:788:-58.6015,0,-52.1245	0/1:29:13,16:13:460:16:568:-42.722,0,-33.0055	0/1:151:68,83:68:2380:83:2948:-220.098,0,-169.002	1/1:148:0,148:0:0:148:5277:-475.066,-44.5524,0	1/1:182:0,182:0:0:182:6464:-581.848,-54.7875,0	1/1:138:1,137:1:36:137:4892:-436.835,-37.9439,0	1/1:94:1,93:1:36:93:3313:-294.789,-24.6985,0	0/1:132:68,64:68:2409:64:2292:-166.805,0,-177.33	1/1:121:0,121:0:0:121:4305:-387.625,-36.4246,0	0/1:102:55,47:55:1930:47:1683:-121.051,0,-143.268	0/1:96:49,47:49:1728:47:1684:-122.948,0,-126.906	0/1:66:37,29:37:1312:29:1044:-74.4068,0,-98.5137	1/1:63:0,63:0:0:63:2241:-201.952,-18.9649,0	1/1:38:0,38:0:0:38:1360:-122.7,-11.4391,0	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	0/1:292:161,131:161:5682:131:4693:-334.627,0,-423.605	0/1:246:108,138:108:3833:138:4911:-368.088,0,-271.115	1/1:90:0,90:0:0:90:3220:-290.023,-27.0927,0	1/1:221:0,221:0:0:221:7913:-712.194,-66.5276,0	1/1:126:7,119:7:248:119:4276:-362.352,-15.2656,0	1/1:92:0,92:0:0:92:3308:-297.937,-27.6948,0	1/1:236:1,235:1:36:235:8397:-752.136,-67.4448,0	1/1:228:0,228:0:0:228:8149:-733.426,-68.6348,0	1/1:42:0,42:0:0:42:1479:-133.401,-12.6433,0	0/1:324:166,158:166:5864:158:5671:-412.973,0,-430.34	0/1:175:88,87:88:3074:87:3088:-225.468,0,-224.21	0/1:156:72,84:72:2560:84:2996:-222.853,0,-183.69	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	0/1:14:7,7:7:240:7:252:-18.8145,0,-17.7202	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:235:113,122:113:4020:122:4349:-320.843,0,-291.249	0/1:110:66,44:66:2364:44:1572:-108.658,0,-179.905	1/1:62:0,62:0:0:62:2223:-200.333,-18.6639,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:231:0,230:0:0:230:8251:-742.238,-69.2369,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:184:87,97:87:3089:97:3472:-257.302,0,-222.848	0/1:72:34,38:34:1212:38:1345:-99.674,0,-87.7122	0/1:85:46,39:46:1620:39:1396:-100.352,0,-120.501	1/1:112:0,112:0:0:112:4032:-363.066,-33.7154,0	0/1:119:47,72:47:1676:72:2576:-196.267,0,-115.305	1/1:195:0,195:0:0:195:6943:-624.938,-58.7009,0	1/1:124:0,124:0:0:124:4412:-397.254,-37.3277,0	1/1:180:0,180:0:0:180:6400:-576.088,-54.1854,0	0/1:170:81,88:81:2884:88:3144:-232.06,0,-208.672	0/1:14:6,8:6:208:8:279:-21.2331,0,-14.8447	1/1:182:0,182:0:0:182:6515:-586.433,-54.7875,0	1/1:127:0,127:0:0:127:4540:-408.758,-38.2308,0	0/1:16:10,6:10:345:6:216:-14.974,0,-26.5643	0/1:168:82,86:82:2898:86:3084:-227.215,0,-210.484	1/1:89:1,88:1:36:88:3141:-279.317,-23.1934,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:18:9,9:9:316:9:324:-24.0873,0,-23.3603	0/1:142:86,56:86:3057:56:2011:-138.517,0,-232.613	1/1:108:1,107:1:36:107:3836:-341.838,-28.913,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:250:0,250:0:0:250:8922:-802.965,-75.2575,0	0/1:224:108,116:108:3810:116:4152:-306.433,0,-275.474	1/1:103:5,98:5:165:98:3507:-300.666,-15.8325,0	1/1:111:0,111:0:0:111:3975:-357.94,-33.4143,0	0/1:265:120,145:120:4272:145:5192:-387.646,0,-304.888	1/1:236:1,235:1:32:235:8352:-748.489,-67.8438,0	0/1:45:26,19:26:909:19:684:-48.344,0,-68.5771	1/1:100:0,100:0:0:100:3574:-321.867,-30.103,0	0/1:54:21,33:21:748:33:1180:-90.2524,0,-51.3897	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:126:0,126:0:0:126:4493:-404.539,-37.9298,0	0/1:125:50,75:50:1780:75:2675:-203.366,0,-122.854	1/1:282:1,281:1:36:281:10029:-898.944,-81.2922,0	1/1:253:0,253:0:0:253:9070:-816.274,-76.1606,0	1/1:119:0,119:0:0:119:4227:-380.608,-35.8226,0	1/1:136:0,136:0:0:136:4852:-436.833,-40.9401,0	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	1/1:170:0,170:0:0:170:6041:-543.795,-51.1751,0	0/1:169:87,81:87:3065:81:2884:-208.704,0,-225.148	1/1:285:1,284:1:36:284:10139:-908.832,-82.1953,0	1/1:60:1,59:1:36:59:2094:-185.13,-14.4635,0	1/1:116:0,116:0:0:116:4136:-372.424,-34.9195,0	1/1:82:0,82:0:0:82:2943:-265.103,-24.6845,0	0/1:169:80,89:80:2832:89:3183:-235.819,0,-204.247	0/1:34:15,19:15:525:19:680:-51.2941,0,-37.343	0/1:81:42,39:42:1492:39:1396:-101.556,0,-110.191	1/1:96:0,96:0:0:96:3435:-309.363,-28.8989,0	0/1:48:25,23:25:883:23:809:-58.6789,0,-65.338	0/1:111:57,54:57:2032:54:1906:-138.401,0,-149.734	0/1:75:41,34:41:1456:34:1211:-86.7183,0,-108.759	1/1:165:0,165:0:0:165:5845:-525.536,-49.67,0	1/1:108:0,108:0:0:108:3829:-344.806,-32.5112,0
chr02	15002007	.	CGAT	TGAT,TGAG	310541	PASS	AB=0.518067,0.476228;ABP=20.8997,33.9822;AC=147,41;AF=0.781915,0.218085;AN=188;AO=11328,3033;CIGAR=1X3M,1X2M1X;DP=14443;DPB=14444;DPRA=0,1.01346;EPP=24350.2,6519.78;EPPR=13.8677;GTI=2;LEN=1,4;MEANALT=2.2766,2.7451;MQM=59.98,59.9456;MQMR=60;NS=94;NUMALT=2;ODDS=0.434928;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=72,72;PQR=0;PRO=0;QA=403762,105342;QR=171;RO=5;RPL=11297,3025;RPP=24332.9,6519.78;RPPR=13.8677;RPR=31,8;RUN=1,1;SAF=11326,3033;SAP=24584.1,6589.09;SAR=2,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:81:0,78,1:0:0:78,1:2766,36:-248.821,-23.4803,0,-245.884,-20.5429,-245.583	1/1:174:0,173,0:0:0:173,0:6163,0:-554.409,-52.0782,0,-554.409,-52.0782,-554.409	1/2:106:0,64,42:0:0:64,42:2285,1456:-304.982,-118.689,-99.4232,-186.644,0,-174.001	1/1:321:0,320,0:0:0:320,0:11404,0:-1025.86,-96.3296,0,-1025.86,-96.3296,-1025.86	1/2:48:0,28,20:0:0:28,20:1008,691:-138.746,-56.49,-48.0611,-82.6075,0,-76.5869	1/2:61:0,45,15:0:0:45,15:1600,489:-169.857,-39.4488,-25.9024,-130.384,0,-125.869	1/2:294:0,166,127:0:0:166,127:5936,4428:-844.131,-360.109,-310.138,-484.015,0,-445.785	1/1:270:0,269,0:0:0:269,0:9583,0:-862.062,-80.9771,0,-862.062,-80.9771,-862.062	1/1:170:1,167,0:1:35:167,0:5949,0:-531.868,-47.4043,0,-532.169,-50.272,-535.016	1/1:194:0,192,0:0:0:192,0:6883,0:-619.295,-57.7978,0,-619.295,-57.7978,-619.295	1/1:98:0,97,0:0:0:97,0:3423,0:-308.002,-29.1999,0,-308.002,-29.1999,-308.002	1/2:171:0,84,87:0:0:84,87:2982,3029:-489.63,-246.656,-221.369,-243.326,0,-217.137	1/1:122:0,121,1:0:0:121,1:4305,25:-387.375,-36.4246,0,-385.427,-34.2258,-385.126	1/2:139:0,75,64:0:0:75,64:2692,2238:-402.011,-182.418,-159.841,-219.947,0,-200.681	1/2:138:0,67,71:0:0:67,71:2412,2511:-401.681,-204.871,-184.702,-197.167,0,-175.794	1/2:110:0,55,53:0:0:55,53:1933,1846:-307.489,-150.153,-133.596,-157.374,0,-141.42	1/1:100:0,100,0:0:0:100,0:3563,0:-320.879,-30.103,0,-320.879,-30.103,-320.879	1/1:115:1,114,0:1:36:114,0:4076,0:-363.429,-31.0202,0,-363.73,-34.3174,-366.667	1/1:73:0,73,0:0:0:73,0:2618,0:-235.867,-21.9752,0,-235.867,-21.9752,-235.867	1/2:290:0,150,138:0:0:150,138:5349,4758:-822.396,-386.359,-341.205,-436.13,0,-394.588	1/2:254:0,137,117:0:0:137,117:4871,4019:-723.64,-326.687,-285.446,-397.302,0,-362.082	1/1:98:0,98,0:0:0:98,0:3500,0:-315.209,-29.5009,0,-315.209,-29.5009,-315.209	1/1:184:0,183,0:0:0:183,0:6563,0:-590.539,-55.0885,0,-590.539,-55.0885,-590.539	1/1:240:0,226,14:0:0:226,14:8037,472:-723.012,-68.0328,0,-684.763,-29.4459,-680.549	1/1:105:0,105,0:0:0:105,0:3736,0:-336.439,-31.6082,0,-336.439,-31.6082,-336.439	1/1:511:0,509,0:0:0:509,0:18132,0:-1631.12,-153.224,0,-1631.12,-153.224,-1631.12	1/1:316:0,316,0:0:0:316,0:11229,0:-1010.5,-95.1255,0,-1010.5,-95.1255,-1010.5	1/1:67:0,67,0:0:0:67,0:2387,0:-215.087,-20.169,0,-215.087,-20.169,-215.087	1/2:273:0,140,132:0:0:140,132:4978,4606:-780.282,-374.618,-332.474,-405.657,0,-365.921	1/2:168:0,96,71:0:0:96,71:3439,2495:-483.488,-203.02,-174.121,-280.414,0,-259.041	1/2:272:0,153,115:0:0:153,115:5460,3986:-769.154,-324.033,-277.976,-445.186,0,-410.567	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:9:0,8,1:0:0:8,1:288,36:-26.7966,-3.29724,-0.889005,-23.8592,0,-23.5581	1/2:33:0,28,5:0:0:28,5:1004,179:-96.8443,-14.9552,-6.5264,-82.247,0,-80.7419	1/2:505:0,233,269:0:0:233,269:8295,9412:-1441.81,-765.739,-695.599,-676.069,0,-595.092	1/2:206:0,88,118:0:0:88,118:3132,4116:-590.369,-335.107,-308.617,-255.614,0,-220.093	1/1:140:0,139,1:0:0:139,1:4939,35:-444.311,-41.8432,0,-441.463,-38.6456,-441.162	1/2:13:0,10,2:0:0:10,2:360,72:-35.249,-5.87483,-2.86453,-29.3742,0,-28.7721	1/1:169:0,169,0:0:0:169,0:5973,0:-537.678,-50.8741,0,-537.678,-50.8741,-537.678	1/1:74:0,74,0:0:0:74,0:2609,0:-235.056,-22.2762,0,-235.056,-22.2762,-235.056	1/2:200:0,102,97:0:0:102,97:3660,3376:-573.107,-274.561,-243.856,-298.607,0,-269.408	1/2:183:0,81,102:0:0:81,102:2875,3561:-524.249,-289.999,-265.616,-234.602,0,-203.897	1/2:138:0,64,73:0:0:64,73:2292,2544:-393.889,-206.967,-187.701,-187.004,0,-165.029	1/1:85:0,85,0:0:0:85,0:3039,0:-273.74,-25.5876,0,-273.74,-25.5876,-273.74	1/2:116:0,65,51:0:0:65,51:2332,1788:-336.067,-145.849,-126.282,-190.573,0,-175.22	1/1:280:0,273,0:0:0:273,0:9728,0:-875.093,-82.1812,0,-875.093,-82.1812,-875.093	1/1:186:0,185,1:0:0:185,1:6614,36:-594.967,-55.6906,0,-592.03,-52.3933,-591.729	1/1:158:0,156,0:0:0:156,0:5582,0:-502.025,-46.9607,0,-502.025,-46.9607,-502.025	1/2:341:0,197,141:0:0:197,141:7035,4851:-967.451,-393.932,-334.629,-573.489,0,-531.044	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:160:0,159,0:0:0:159,0:5696,0:-512.395,-47.8638,0,-512.395,-47.8638,-512.395	1/1:121:0,121,0:0:0:121,0:4317,0:-388.702,-36.4246,0,-388.702,-36.4246,-388.702	1/2:63:0,29,34:0:0:29,34:1026,1178:-179.658,-96.0867,-87.3568,-83.9215,0,-73.6864	1/2:189:0,92,94:0:0:92,9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chr02	15002067	.	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chr02	15062946	.	G	A	26347.9	PASS	AB=0.539303;ABP=42.269;AC=41;AF=0.218085;AN=188;AO=1584;CIGAR=1X;DP=6467;DPB=6467;DPRA=1.08997;EPP=3442.62;EPPR=10602;GTI=0;LEN=1;MEANALT=1;MQM=59.9293;MQMR=59.9885;NS=94;NUMALT=1;ODDS=1.3745;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55751;QR=174146;RO=4881;RPL=0;RPP=3442.62;RPPR=10602;RPR=1584;RUN=1;SAF=1584;SAP=3442.62;SAR=0;SRF=4881;SRP=10602;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:113:113,0:113:4022:0:0:0,-34.0164,-362.167	0/1:106:47,59:47:1676:59:2078:-155.378,0,-119.218	0/0:120:120,0:120:4285:0:0:0,-36.1236,-385.827	0/1:36:16,20:16:561:20:720:-54.2917,0,-39.98	0/1:22:7,15:7:252:15:540:-42.3139,0,-16.4063	0/1:109:44,65:44:1569:65:2302:-174.626,0,-108.687	0/0:218:218,0:218:7778:0:0:0,-65.6245,-700.051	0/0:85:85,0:85:3015:0:0:0,-25.5875,-271.577	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:39:20,19:20:705:19:665:-48.4326,0,-52.0326	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:24:13,11:13:468:11:377:-27.0332,0,-35.2349	0/1:35:14,21:14:504:21:748:-57.1092,0,-35.162	0/1:41:26,15:26:921:15:521:-34.8741,0,-70.863	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:132:62,70:62:2213:70:2481:-183.807,0,-159.689	0/1:144:85,59:85:3052:59:2039:-140.42,0,-231.56	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/1:90:77,13:77:2727:13:468:-15.3669,0,-218.576	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/0:190:190,0:190:6756:0:0:0,-57.1957,-608.101	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.894	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:157:76,81:76:2717:81:2867:-211.002,0,-197.51	0/1:96:43,53:43:1544:53:1855:-138.325,0,-110.354	0/1:69:36,33:36:1296:33:1157:-83.6539,0,-96.1729	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:11:4,7:4:144:7:237:-18.3477,0,-10.0023	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:145:80,65:80:2864:65:2246:-158.745,0,-214.348	0/1:193:81,112:81:2904:112:3925:-295.332,0,-203.497	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:90:90,0:90:3202:0:0:0,-27.0927,-288.401	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:123:50,73:50:1796:73:2582:-195.6,0,-124.896	0/1:30:19,11:19:680:11:396:-26.9518,0,-52.4983	0/1:30:16,14:16:576:14:485:-34.9461,0,-43.1441	0/0:57:57,0:57:2022:0:0:0,-17.1587,-182.249	0/1:85:31,54:31:1101:54:1903:-145.957,0,-73.8108	0/0:123:123,0:123:4412:0:0:0,-37.0267,-397.251	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/1:223:69,154:69:2472:154:5467:-425.026,0,-155.604	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/1:17:5,12:5:180:12:428:-33.7413,0,-11.4346	0/1:65:29,36:29:1029:36:1265:-94.579,0,-73.3542	0/0:126:123,3:123:4401:3:108:0,-27.8546,-386.183	0/1:12:5,7:5:176:7:248:-19.0484,0,-12.5727	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/1:74:21,53:21:752:53:1900:-149.002,0,-45.73	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.324	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:99:99,0:99:3517:0:0:0,-29.802,-316.74	0/1:154:56,98:56:2012:98:3391:-258.96,0,-134.994	0/0:45:42,3:42:1504:3:108:0,-3.47118,-125.579	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:146:61,85:61:2184:85:2927:-219.708,0,-152.876	0/0:137:137,0:137:4858:0:0:0,-41.2411,-437.375	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:72:34,38:34:1216:38:1337:-98.9538,0,-88.0275	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:69:69,0:69:2438:0:0:0,-20.7711,-219.673	0/1:52:28,24:28:985:24:849:-61.0743,0,-73.308	0/0:120:120,0:120:4289:0:0:0,-36.1236,-386.182	0/0:107:107,0:107:3829:0:0:0,-32.2102,-344.805	0/0:89:89,0:89:3162:0:0:0,-26.7917,-284.803	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726	0/1:81:35,46:35:1252:46:1603:-120.17,0,-88.6016	0/0:111:111,0:111:3912:0:0:0,-33.4143,-352.272	0/0:72:72,0:72:2516:0:0:0,-21.6742,-226.687	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/0:41:40,0:40:1409:0:0:0,-12.0412,-126.746	0/1:74:47,27:47:1688:27:968:-65.0748,0,-129.931	0/1:28:16,12:16:572:12:428:-30.43,0,-43.3846	0/1:45:28,17:28:1008:17:608:-41.5057,0,-77.49	0/0:42:41,0:41:1461:0:0:0,-12.3422,-131.424	0/1:28:14,14:14:489:14:500:-36.9073,0,-35.9101	0/1:44:25,19:25:896:19:679:-48.1936,0,-67.715	0/1:49:11,38:11:396:38:1341:-106.238,0,-21.2276	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83
chr02	15062966	.	TT	TC	102286	PASS	AB=0.460361;ABP=43.1216;AC=146;AF=0.776596;AN=188;AO=4845;CIGAR=1M1X;DP=6456;DPB=6456;DPRA=0;EPP=10497.8;EPPR=3416.7;GTI=0;LEN=1;MEANALT=1.14894;MQM=59.9789;MQMR=59.9359;NS=94;NUMALT=1;ODDS=4.41288;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172614;QR=55541;RO=1592;RPL=3;RPP=10497.8;RPPR=3416.7;RPR=4842;RUN=1;SAF=4845;SAP=10523.8;SAR=0;SRF=1592;SRP=3459.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:112:0,112:0:0:112:3961:-356.682,-33.7154,0	0/1:102:57,45:57:1998:45:1593:-112.954,0,-149.386	1/1:120:0,120:0:0:120:4260:-383.583,-36.1236,0	0/1:37:21,16:21:732:16:576:-41.0369,0,-55.0623	0/1:24:17,7:17:608:7:248:-15.4395,0,-47.8275	0/1:108:64,44:64:2253:44:1580:-109.98,0,-170.52	1/1:215:0,215:0:0:215:7655:-688.83,-64.7215,0	1/1:85:0,85:0:0:85:3028:-272.752,-25.5876,0	1/1:56:0,53:0:0:53:1892:-170.199,-15.9546,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:43:20,23:20:691:23:820:-61.1782,0,-49.5645	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:23:10,13:10:347:13:459:-34.7204,0,-24.6391	0/1:35:21,14:21:752:14:504:-35.162,0,-57.4704	0/1:42:15,27:15:518:27:957:-73.8006,0,-34.3025	1/1:32:0,32:0:0:32:1133:-102.278,-9.63296,0	1/1:54:0,54:0:0:54:1928:-173.796,-16.2556,0	1/1:40:0,38:0:0:38:1364:-122.701,-11.4391,0	0/1:134:72,62:72:2503:62:2210:-158.824,0,-185.181	0/1:141:59,82:59:2019:82:2920:-220.591,0,-139.516	1/1:94:0,94:0:0:94:3335:-300.367,-28.2968,0	1/1:56:0,56:0:0:56:1991:-179.464,-16.8577,0	0/1:89:13,76:13:446:76:2715:-217.802,0,-13.6749	1/1:53:0,52:0:0:52:1850:-166.42,-15.6536,0	1/1:187:0,186:0:0:186:6627:-596.167,-55.9916,0	1/1:99:0,97:0:0:97:3438:-309.275,-29.1999,0	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	0/1:157:81,76:81:2878:76:2712:-197.063,0,-211.996	0/1:97:54,43:54:1863:43:1540:-109.693,0,-138.742	0/1:69:33,36:33:1149:36:1280:-94.7322,0,-82.9247	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:11:7,4:7:230:4:144:-10.0023,0,-17.7091	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:148:67,81:67:2337:81:2904:-217.043,0,-166.032	0/1:192:111,81:111:3847:81:2884:-202,0,-288.62	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:3:2,1:2:61:1:36:-2.69518,0,-4.89014	1/1:87:0,86:0:0:86:3071:-276.298,-25.8886,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:124:74,50:74:2533:50:1767:-121.983,0,-190.888	0/1:29:11,18:11:389:18:635:-48.7471,0,-26.6178	0/1:30:14,16:14:489:16:575:-43.0538,0,-35.3091	1/1:56:0,56:0:0:56:1982:-178.653,-16.8577,0	0/1:86:55,31:55:1909:31:1091:-72.6102,0,-146.196	1/1:122:0,121:0:0:121:4319:-388.527,-36.4246,0	1/1:63:0,63:0:0:63:2246:-202.402,-18.9649,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	0/1:222:151,71:151:5296:71:2515:-159.774,0,-409.949	0/1:8:6,2:6:203:2:72:-4.42848,0,-16.1921	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:17:12,5:12:424:5:180:-11.4346,0,-33.3789	0/1:67:37,30:37:1243:30:1069:-76.3525,0,-91.9891	1/1:126:3,122:3:108:122:4352:-381.781,-27.9134,0	0/1:12:7,5:7:248:5:171:-12.1131,0,-19.0499	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	0/1:75:53,21:53:1843:21:752:-45.3703,0,-143.511	1/1:76:0,76:0:0:76:2711:-244.234,-22.8783,0	1/1:9:0,9:0:0:9:312:-28.4143,-2.70927,0	1/1:99:0,99:0:0:99:3513:-316.381,-29.802,0	0/1:149:93,55:93:3238:55:1976:-133.34,0,-246.864	1/1:43:3,40:3:108:40:1440:-119.823,-2.86912,0	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	0/1:148:86,62:86:3002:62:2212:-154.793,0,-225.859	1/1:140:0,139:0:0:139:4938:-444.213,-41.8432,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	1/1:70:0,70:0:0:70:2495:-224.803,-21.0721,0	0/1:71:38,33:38:1346:33:1184:-85.4952,0,-100.066	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:68:0,68:0:0:68:2404:-216.593,-20.47,0	0/1:53:25,28:25:876:28:991:-73.5489,0,-63.2016	1/1:121:1,120:1:36:120:4265:-380.412,-32.8264,0	1/1:107:0,106:0:0:106:3783:-340.439,-31.9092,0	1/1:87:1,86:1:36:86:3060:-272.032,-22.5913,0	1/1:68:0,67:0:0:67:2387:-214.727,-20.169,0	1/1:23:0,23:0:0:23:808:-73.0401,-6.92369,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:80:47,33:47:1623:33:1167:-81.254,0,-122.272	1/1:112:0,110:0:0:110:3894:-350.351,-33.1133,0	1/1:71:0,71:0:0:71:2534:-228.312,-21.3731,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	0/1:77:27,50:27:959:50:1788:-138.023,0,-63.4382	0/1:28:12,16:12:428:16:572:-43.3846,0,-30.4302	0/1:45:17,28:17:608:28:1008:-77.49,0,-41.5059	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:26:13,13:13:464:13:468:-34.6329,0,-34.2709	0/1:48:23,25:23:791:25:892:-66.1502,0,-57.0542	0/1:49:38,11:38:1353:11:392:-20.8677,0,-107.319	1/1:52:0,52:0:0:52:1837:-165.608,-15.6536,0	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0
chr02	15092464	.	G	C	129154	PASS	AB=0.685414;ABP=2848.75;AC=100;AF=0.531915;AN=188;AO=6911;CIGAR=1X;DP=9938;DPB=9938;DPRA=0;EPP=15010.1;EPPR=6563.03;GTI=14;LEN=1;MEANALT=1.02128;MQM=59.5145;MQMR=59.9445;NS=94;NUMALT=1;ODDS=0.301413;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247352;QR=107894;RO=3025;RPL=1;RPP=15001.4;RPPR=6571.71;RPR=6910;RUN=1;SAF=6910;SAP=15001.4;SAR=1;SRF=1;SRP=6563.03;SRR=3024;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:14,32:14:496:32:1144:-89.3088,0,-31.1269	0/1:139:17,122:17:608:122:4364:-350.732,0,-13.2089	0/1:144:30,114:30:1053:114:4076:-323.641,0,-51.7303	0/1:174:60,114:60:2140:114:4076:-314.612,0,-140.489	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/1:55:27,28:27:964:28:1004:-73.2556,0,-70.5202	1/1:131:9,122:9:324:122:4364:-363.416,-9.92908,0	0/1:173:43,130:43:1528:130:4648:-366.283,0,-85.7349	0/1:103:20,83:20:720:83:2956:-234.873,0,-34.1227	0/1:136:59,77:59:2108:77:2752:-206.945,0,-149.049	0/1:109:29,80:29:1032:80:2856:-224.439,0,-60.3812	0/1:95:35,60:35:1232:60:2156:-165.684,0,-82.5862	0/1:103:53,50:53:1900:50:1796:-130.894,0,-140.166	0/1:97:29,68:29:1036:68:2440:-190.623,0,-64.354	0/1:84:42,42:42:1496:42:1512:-111.054,0,-109.648	0/1:64:25,39:25:896:39:1404:-107.372,0,-61.6944	0/1:85:25,59:25:896:59:2116:-165.027,0,-55.3141	0/1:44:14,30:14:500:30:1072:-83.5119,0,-32.0909	0/1:58:7,51:7:248:51:1820:-146.579,0,-5.20445	0/1:155:37,118:37:1316:118:4204:-331.852,0,-72.082	0/1:173:53,119:53:1880:119:4236:-329.048,0,-117.218	0/1:87:18,69:18:632:69:2452:-194.734,0,-31.0171	0/1:112:24,88:24:860:88:3152:-249.948,0,-44.0065	1/1:109:5,104:5:176:104:3712:-318.01,-16.6273,0	0/1:71:13,58:13:464:58:2076:-165.691,0,-20.7244	0/1:274:56,218:56:2008:218:7800:-619.083,0,-98.4818	0/1:216:55,161:55:1949:161:5776:-454.81,0,-110.662	0/1:33:15,18:15:540:18:644:-48.3566,0,-39.0025	0/1:253:49,204:49:1748:204:7324:-582.983,0,-81.4436	0/1:168:49,119:49:1736:119:4272:-334.017,0,-105.952	0/1:130:34,96:34:1220:96:3452:-270.701,0,-70.9729	0/1:7:2,5:2:72:5:180:-14.434,0,-4.72951	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0	0/1:5:1,4:1:36:4:144:-11.7944,0,-2.09312	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:20:3,17:3:108:17:612:-49.3541,0,-4.05457	0/1:237:115,122:115:4121:122:4376:-322.633,0,-299.728	1/1:139:13,126:13:460:126:4512:-364.457,-0.107796,0	0/1:91:25,66:25:896:66:2368:-185.868,0,-53.5666	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:124:37,87:37:1316:87:3120:-243.588,0,-81.2564	0/1:32:10,22:10:352:22:784:-61.0016,0,-22.3852	0/1:107:27,80:27:964:80:2856:-224.18,0,-54.8666	0/1:87:18,69:18:648:69:2472:-196.538,0,-32.4623	0/1:56:28,28:28:996:28:1008:-74.1787,0,-73.0972	0/1:114:29,85:29:1044:85:3036:-239.139,0,-59.9574	0/1:109:27,82:27:956:82:2940:-231.91,0,-53.5435	0/1:196:47,149:47:1672:149:5320:-419.716,0,-91.7585	0/1:135:16,119:16:557:119:4252:-342.19,0,-9.81652	0/1:142:58,84:58:2068:84:3016:-228.892,0,-143.645	0/1:212:35,177:35:1236:177:6348:-507.452,0,-47.7259	0/1:7:1,6:1:32:6:216:-17.6833,0,-1.0921	0/1:115:23,92:23:824:92:3296:-262.135,0,-39.8649	0/1:73:15,58:15:532:58:2084:-165.848,0,-26.2379	0/1:23:3,20:3:108:20:716:-57.844,0,-3.15148	0/1:141:57,84:57:2028:84:3004:-228.1,0,-140.348	0/1:63:6,57:6:212:57:2040:-164.907,0,-0.459907	1/1:12:1,11:1:36:11:384:-31.295,-0.0140851,0	0/1:21:7,14:7:244:14:500:-39.0112,0,-15.9778	0/1:100:31,69:31:1104:69:2460:-191.53,0,-69.5676	0/1:151:55,96:55:1968:96:3448:-265.045,0,-131.94	0/1:20:3,17:3:108:17:608:-49.0314,0,-4.05457	0/1:298:155,143:155:5529:143:5128:-371.938,0,-408.028	0/1:165:45,120:45:1589:120:4308:-338.182,0,-93.6284	0/1:102:37,65:37:1316:65:2328:-178.874,0,-88.0361	0/1:85:22,63:22:784:63:2256:-177.609,0,-45.2954	0/1:127:30,97:30:1072:97:3460:-272.794,0,-58.5607	0/1:143:51,92:51:1828:92:3300:-254.137,0,-121.754	0/1:51:18,33:18:648:33:1184:-91.4945,0,-43.2994	0/1:69:7,62:7:248:62:2212:-178.543,0,-1.89312	0/1:87:24,63:24:864:63:2264:-177.829,0,-51.893	0/1:34:23,11:23:804:11:392:-25.3743,0,-62.4443	0/1:123:12,111:12:424:111:3976:-320.89,0,-1.46973	0/1:104:56,48:56:2016:48:1720:-123.778,0,-150.406	0/1:149:40,109:40:1428:109:3908:-307.029,0,-83.9182	0/1:231:113,118:113:4017:118:4216:-310.046,0,-292.182	0/1:70:27,43:27:968:43:1544:-118.173,0,-66.3653	0/1:163:61,102:61:2172:102:3644:-279.027,0,-146.679	0/1:34:10,24:10:360:24:856:-67.1261,0,-22.5093	0/1:106:29,77:29:1040:77:2752:-216.009,0,-62.0052	0/1:113:30,83:30:1072:83:2968:-233.094,0,-62.7761	0/1:239:47,192:47:1680:192:6896:-548.593,0,-79.5409	0/1:103:31,72:31:1112:72:2580:-201.174,0,-69.3853	0/1:87:37,50:37:1316:50:1784:-134.644,0,-92.5522	0/1:68:19,49:19:680:49:1744:-136.756,0,-41.0591	0/1:175:82,93:82:2929:93:3328:-247.003,0,-211.163	0/1:39:14,25:14:500:25:896:-69.1849,0,-33.5259	0/1:89:39,50:39:1396:50:1776:-133.261,0,-99.1474	0/1:90:39,51:39:1400:51:1836:-138.372,0,-99.0163	0/1:70:29,41:29:1044:41:1456:-110.253,0,-73.2027	0/1:186:62,124:62:2224:124:4432:-342.996,0,-144.433	0/1:69:27,42:27:951:42:1508:-115.201,0,-65.1328	0/1:146:102,44:102:3652:44:1548:-95.6552,0,-284.933	0/1:120:53,67:53:1891:67:2392:-179.392,0,-134.344
chr02	15092471	.	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chr02	15187910	.	T	G	231843	PASS	AB=0.488082;ABP=8.65195;AC=146;AF=0.776596;AN=188;AO=8489;CIGAR=1X;DP=10852;DPB=10852;DPRA=116.677;EPP=17.6218;EPPR=5032.51;GTI=1;LEN=1;MEANALT=1.07527;MQM=59.7959;MQMR=59.9996;NS=94;NUMALT=1;ODDS=2.1642;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302480;QR=82654;RO=2356;RPL=4125;RPP=17.6218;RPPR=5032.51;RPR=4364;RUN=1;SAF=8489;SAP=18436.6;SAR=0;SRF=2356;SRP=5119;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1266:-114.239,-10.8371,0	1/1:154:0,154:0:0:154:5505:-495.575,-46.3586,0	0/1:223:151,72:151:5274:72:2556:-163.16,0,-407.681	1/1:281:0,280:0:0:280:9966:-896.305,-84.2884,0	0/1:103:54,49:54:1904:49:1741:-125.966,0,-140.632	0/1:59:33,26:33:1151:26:894:-63.0084,0,-86.1345	0/1:154:77,77:77:2666:77:2734:-199.343,0,-193.831	1/1:182:0,182:0:0:182:6456:-581.126,-54.7875,0	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	1/1:186:1,185:1:36:185:6587:-589.276,-52.3933,0	1/1:63:0,63:0:0:63:2241:-201.946,-18.9649,0	0/1:67:35,32:35:1212:32:1144:-83.1005,0,-89.214	1/1:78:0,78:0:0:78:2766:-249.173,-23.4803,0	0/1:78:42,36:42:1462:36:1292:-93.1034,0,-108.393	0/1:78:36,42:36:1255:42:1505:-112.25,0,-89.7711	0/1:67:27,40:27:935:40:1421:-108.016,0,-64.2931	1/1:78:0,78:0:0:78:2783:-250.71,-23.4803,0	0/1:74:38,36:38:1348:36:1279:-93.1362,0,-99.344	1/1:54:1,53:1:21:53:1908:-169.898,-14.1557,0	0/1:214:109,105:109:3870:105:3721:-270.66,0,-284.076	0/1:164:93,71:93:3233:71:2533:-178.851,0,-241.826	1/1:117:0,117:0:0:117:4147:-373.071,-35.2205,0	1/1:117:0,117:0:0:117:4204:-378.513,-35.2205,0	1/1:135:3,132:3:104:132:4712:-414.538,-30.9362,0	1/1:98:0,98:0:0:98:3472:-312.692,-29.5009,0	1/1:374:0,374:0:0:374:13340:-1200.17,-112.585,0	1/1:243:1,242:1:36:242:8646:-774.535,-69.552,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:333:179,154:179:6242:154:5492:-394.023,0,-461.653	0/1:132:68,64:68:2411:64:2273:-165.094,0,-177.511	0/1:117:58,59:58:2043:59:2094:-153.463,0,-148.921	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:20:0,20:0:0:20:711:-64.3156,-6.0206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:17:12,5:12:406:5:180:-11.4346,0,-31.7466	0/1:21:5,16:5:172:16:576:-45.8534,0,-9.49634	0/1:266:146,119:146:5138:119:4248:-302.322,0,-382.498	0/1:250:119,129:119:4189:129:4597:-339.019,0,-302.329	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	1/1:140:1,139:1:36:139:4943:-441.423,-38.5459,0	1/1:69:0,69:0:0:69:2457:-221.383,-20.7711,0	0/1:172:64,108:64:2232:108:3868:-296.493,0,-149.369	0/1:82:44,38:44:1564:38:1353:-97.3777,0,-116.367	0/1:82:38,44:38:1338:44:1548:-114.899,0,-96.034	1/1:164:0,164:0:0:164:5849:-526.337,-49.3689,0	0/1:128:66,62:66:2335:62:2216:-161.173,0,-171.878	1/1:210:0,210:0:0:210:7497:-674.683,-63.2163,0	1/1:111:1,110:1:36:110:3890:-346.674,-29.8161,0	1/1:177:0,177:0:0:177:6301:-567.143,-53.2823,0	0/1:142:75,67:75:2624:67:2400:-173.502,0,-193.665	0/1:12:7,5:7:239:5:180:-12.9397,0,-18.2304	1/1:119:0,119:0:0:119:4242:-381.959,-35.8226,0	1/1:30:0,30:0:0:30:1072:-96.7843,-9.0309,0	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:145:86,59:86:3034:59:2073:-143.19,0,-229.643	1/1:60:0,60:0:0:60:2140:-192.868,-18.0618,0	0/1:9:6,3:6:212:3:104:-6.99354,0,-16.7155	0/1:23:16,7:16:556:7:252:-16.1053,0,-43.4435	0/1:81:41,40:41:1441:40:1432:-104.794,0,-105.6	1/1:133:0,133:0:0:133:4783:-430.604,-40.037,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:238:0,237:0:0:237:8462:-761.019,-71.3441,0	0/1:226:128,98:128:4446:98:3478:-245.168,0,-332.287	1/1:74:3,71:3:108:71:2525:-217.425,-12.2011,0	1/1:118:0,117:0:0:117:4176:-375.664,-35.2205,0	0/1:209:89,120:89:3155:120:4253:-319.404,0,-221.262	1/1:88:0,88:0:0:88:3133:-281.967,-26.4906,0	0/1:32:13,19:13:460:19:684:-52.2574,0,-32.1024	1/1:96:0,96:0:0:96:3418:-307.834,-28.8989,0	0/1:108:49,59:49:1740:59:2090:-155.849,0,-124.373	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:191:1,190:1:32:190:6742:-603.657,-54.2974,0	0/1:63:22,41:22:780:41:1460:-112.731,0,-51.5581	1/1:146:0,146:0:0:146:5209:-468.949,-43.9504,0	1/1:187:1,186:1:36:186:6643:-594.212,-52.6943,0	1/1:175:0,175:0:0:175:6238:-561.515,-52.6803,0	1/1:112:1,111:1:36:111:3916:-349.034,-30.1171,0	1/1:15:0,15:0:0:15:525:-47.5789,-4.51545,0	1/1:152:1,150:1:32:150:5338:-477.289,-42.5961,0	0/1:144:58,86:58:2048:86:3058:-232.098,0,-141.244	1/1:302:1,301:1:32:301:10720:-961.321,-87.7117,0	1/1:126:0,126:0:0:126:4508:-405.849,-37.9298,0	1/1:82:0,82:0:0:82:2919:-262.935,-24.6845,0	1/1:78:0,78:0:0:78:2792:-251.351,-23.4803,0	0/1:167:70,97:70:2451:97:3465:-261.762,0,-170.575	0/1:39:23,16:23:803:16:576:-40.4348,0,-60.8482	1/1:100:0,100:0:0:100:3561:-320.698,-30.103,0	1/1:96:0,96:0:0:96:3423:-308.284,-28.8989,0	0/1:64:30,34:30:1064:34:1220:-90.8409,0,-76.8057	0/1:141:73,68:73:2569:68:2444:-177.769,0,-189.015	0/1:69:50,19:50:1751:19:660:-38.9319,0,-137.102	1/1:127:0,127:0:0:127:4537:-408.469,-38.2308,0	1/1:97:1,96:1:36:96:3440:-305.972,-25.6016,0
chr02	15188003	.	C	T	40738.9	PASS	AB=0.52527;ABP=28.6909;AC=42;AF=0.223404;AN=188;AO=2459;CIGAR=1X;DP=10358;DPB=10358;DPRA=1.24296;EPP=5342.66;EPPR=17149;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.8979;MQMR=59.9894;NS=94;NUMALT=1;ODDS=0.830919;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86650;QR=281659;RO=7896;RPL=0;RPP=5342.66;RPPR=17149;RPR=2459;RUN=1;SAF=0;SAP=5342.66;SAR=2459;SRF=0;SRP=17149;SRR=7896;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/0:134:134,0:134:4772:0:0:0,-40.338,-429.637	0/1:197:71,126:71:2552:126:4414:-338.042,0,-170.627	0/0:202:202,0:202:7203:0:0:0,-60.8081,-648.311	0/1:108:47,61:47:1677:61:2158:-161.973,0,-118.704	0/1:43:18,25:18:648:25:887:-67.2045,0,-45.7076	0/1:171:91,79:91:3255:79:2764:-197.602,0,-241.774	0/0:171:170,0:170:6066:0:0:0,-51.1751,-545.816	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.38	0/0:156:156,0:156:5575:0:0:0,-46.9607,-501.874	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/1:90:49,41:49:1752:41:1426:-101.409,0,-130.871	0/0:80:80,0:80:2848:0:0:0,-24.0824,-256.556	0/1:57:31,26:31:1100:26:928:-66.6795,0,-82.1516	0/1:80:35,45:35:1252:45:1612:-121.288,0,-88.9027	0/1:50:24,26:24:864:26:924:-68.4262,0,-63.0311	0/0:56:56,0:56:1972:0:0:0,-16.8577,-177.753	0/1:77:40,37:40:1436:37:1324:-96.2828,0,-106.358	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:326:134,192:134:4723:192:6789:-512.932,0,-327.096	0/1:174:89,85:89:3172:85:3010:-218.62,0,-233.326	0/0:123:123,0:123:4405:0:0:0,-37.0267,-396.62	0/0:127:127,0:127:4522:0:0:0,-38.2308,-407.146	0/0:140:132,8:132:4735:8:258:0,-18.6112,-402.774	0/0:53:53,0:53:1872:0:0:0,-15.9546,-168.756	0/0:366:363,3:363:12948:3:93:0,-101.5,-1156.46	0/0:212:212,0:212:7592:0:0:0,-63.8184,-683.318	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:341:151,190:151:5412:190:6735:-503.573,0,-384.558	0/1:165:86,79:86:3084:79:2687:-192.307,0,-228.118	0/1:159:78,81:78:2781:81:2865:-210.221,0,-202.663	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:213:108,105:108:3848:105:3719:-270.794,0,-282.396	0/1:248:104,143:104:3705:143:5033:-378.37,0,-258.938	0/0:50:50,0:50:1758:0:0:0,-15.0515,-158.502	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:144:144,0:144:5110:0:0:0,-43.3483,-460.044	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:170:83,87:83:2952:87:3051:-223.639,0,-214.737	0/1:78:36,42:36:1288:42:1493:-111.182,0,-92.7432	0/1:54:22,32:22:767:32:1136:-86.2924,0,-53.0938	0/0:172:170,2:170:6083:2:72:0,-44.9404,-540.735	0/1:160:77,83:77:2760:83:2911:-214.059,0,-200.477	0/0:202:202,0:202:7216:0:0:0,-60.8081,-649.494	0/0:150:150,0:150:5365:0:0:0,-45.1545,-482.981	0/0:148:148,0:148:5275:0:0:0,-44.5524,-474.883	0/1:271:143,128:143:5140:128:4547:-327.815,0,-381.16	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/0:167:167,0:167:5981:0:0:0,-50.272,-538.394	0/0:53:53,0:53:1835:0:0:0,-15.9546,-165.425	0/1:17:4,13:4:140:13:464:-36.98,0,-7.82707	0/1:174:89,85:89:3165:85:3036:-221.091,0,-232.695	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/1:70:37,33:37:1315:33:1165:-84.0829,0,-97.5789	0/0:119:118,1:118:4211:1:36:0,-32.2243,-375.573	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:262:262,0:262:9383:0:0:0,-78.8699,-844.346	0/1:246:118,128:118:4212:128:4453:-326.802,0,-305.206	0/0:103:100,3:100:3584:3:104:0,-21.3033,-313.064	0/0:89:89,0:89:3177:0:0:0,-26.7917,-286.153	0/1:210:81,129:81:2896:129:4528:-344.437,0,-197.66	0/0:172:172,0:172:6155:0:0:0,-51.7772,-554.049	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/0:65:65,0:65:2285:0:0:0,-19.5669,-205.908	0/1:84:39,45:39:1388:45:1612:-120.084,0,-99.9324	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:98:98,0:98:3493:0:0:0,-29.5009,-314.572	0/1:55:33,22:33:1176:22:756:-51.6392,0,-89.5911	0/0:123:123,0:123:4397:0:0:0,-37.0267,-395.902	0/0:174:174,0:174:6201:0:0:0,-52.3792,-558.186	0/0:153:153,0:153:5468:0:0:0,-46.0576,-492.249	0/0:113:111,2:111:3969:2:72:0,-27.1797,-350.563	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:91:89,2:89:3184:2:72:0,-20.557,-279.947	0/1:145:88,57:88:3094:57:2002:-136.801,0,-235.036	0/0:275:275,0:275:9819:0:0:0,-82.7832,-883.651	0/0:120:120,0:120:4248:0:0:0,-36.1236,-382.499	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919	0/1:153:80,73:80:2847:73:2567:-185.208,0,-210.409	0/1:49:27,22:27:949:22:777:-55.4999,0,-70.9723	0/0:79:79,0:79:2805:0:0:0,-23.7814,-252.689	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/1:27:11,16:11:396:16:557:-42.3278,0,-27.8549	0/1:64:28,36:28:995:36:1296:-97.678,0,-70.5981	0/1:58:24,34:24:864:34:1177:-88.7725,0,-60.6228	0/0:130:130,0:130:4641:0:0:0,-39.1339,-417.852	0/0:112:112,0:112:3978:0:0:0,-33.7154,-358.21
chr02	15188017	.	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chr02	15261651	.	T	A	94088	PASS	AB=0.5315;ABP=22.436;AC=148;AF=0.787234;AN=188;AO=4357;CIGAR=1X;DP=5422;DPB=5422;DPRA=0;EPP=9420.74;EPPR=2296.12;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9612;MQMR=59.5752;NS=94;NUMALT=1;ODDS=0.455304;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156085;QR=37896;RO=1064;RPL=4353;RPP=9429.4;RPPR=2296.12;RPR=4;RUN=1;SAF=1;SAP=9455.43;SAR=4356;SRF=0;SRP=2313.46;SRR=1064;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:78:0,78:0:0:78:2779:-250.333,-23.4803,0	0/1:65:22,43:22:784:43:1548:-120.046,0,-51.3088	1/1:86:0,86:0:0:86:3064:-275.988,-25.8886,0	0/1:45:23,22:23:794:22:792:-58.0593,0,-57.9508	0/1:29:8,21:8:288:21:756:-59.6374,0,-17.5375	0/1:54:22,32:22:788:32:1152:-87.7345,0,-54.9822	1/1:84:1,83:1:36:83:2975:-264.375,-21.6882,0	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:48:0,47:0:0:47:1688:-151.847,-14.1484,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:44:24,20:24:856:20:720:-51.8835,0,-64.0636	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:56:26,30:26:932:30:1063:-79.1194,0,-67.3412	0/1:56:32,24:32:1148:24:859:-60.7741,0,-86.6811	0/1:37:18,19:18:644:19:684:-50.7522,0,-47.1506	1/1:42:0,42:0:0:42:1508:-136.01,-12.6433,0	0/1:42:23,19:23:820:19:684:-49.2462,0,-61.466	1/1:33:0,33:0:0:33:1184:-106.855,-9.93399,0	0/1:144:49,95:49:1752:95:3416:-264.305,0,-114.519	0/1:66:23,43:23:828:43:1540:-119.025,0,-54.8616	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	1/1:28:1,27:1:36:27:972:-84.1996,-4.83057,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:191:0,191:0:0:191:6810:-612.97,-57.4967,0	1/1:93:0,93:0:0:93:3304:-297.49,-27.9958,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:79:33,46:33:1169:46:1648:-124.799,0,-81.7316	0/1:73:26,47:26:932:47:1688:-130.232,0,-62.2191	0/1:50:31,19:31:1089:19:665:-45.1213,0,-83.2428	1/1:11:0,11:0:0:11:396:-35.852,-3.31133,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:34:20,14:20:716:14:500:-35.1012,0,-54.5318	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:159:91,68:91:3268:68:2444:-172.351,0,-246.444	0/1:106:59,47:59:2086:47:1673:-118.946,0,-156.097	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:95:0,95:0:0:95:3408:-306.934,-28.5979,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:49:19,30:19:665:30:1076:-82.4024,0,-45.4214	0/1:31:15,16:15:540:16:572:-42.4815,0,-39.6023	0/1:37:19,18:19:680:18:648:-47.5138,0,-50.3901	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:86:52,34:52:1864:34:1220:-84.2182,0,-142.141	1/1:104:0,104:0:0:104:3740:-336.799,-31.3071,0	1/1:87:0,87:0:0:87:3120:-281.024,-26.1896,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:91:32,59:32:1129:59:2124:-164.034,0,-74.5217	0/1:26:10,16:10:356:16:576:-44.3482,0,-24.5545	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:24:0,24:0:0:24:852:-76.9971,-7.22472,0	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	0/1:57:22,35:22:777:35:1256:-96.1866,0,-52.6576	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/1:47:20,27:20:716:27:945:-71.2138,0,-50.6175	0/1:35:18,17:18:640:17:608:-44.516,0,-47.3851	1/1:108:1,107:1:36:107:3831:-341.388,-28.913,0	1/1:17:0,17:0:0:17:595:-53.8767,-5.11751,0	1/1:140:0,140:0:0:140:5018:-451.765,-42.1442,0	0/1:90:39,51:39:1372:51:1832:-138.068,0,-96.685	1/1:58:5,53:5:180:53:1877:-152.655,-0.907675,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:69:35,34:35:1233:34:1224:-89.696,0,-90.501	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:24:13,11:13:453:11:392:-28.3953,0,-33.8703	1/1:79:0,79:0:0:79:2817:-253.76,-23.7814,0	0/1:56:23,33:23:816:33:1184:-90.0106,0,-56.8946	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	0/1:31:20,11:20:720:11:392:-26.2881,0,-55.7877	1/1:106:0,106:0:0:106:3795:-341.691,-31.9092,0	1/1:127:0,127:0:0:127:4560:-410.565,-38.2308,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:44:21,23:21:752:23:824:-61.238,0,-54.7609	1/1:181:0,181:0:0:181:6482:-583.461,-54.4864,0	1/1:99:0,99:0:0:99:3560:-320.607,-29.802,0	1/1:33:0,33:0:0:33:1188:-107.226,-9.93399,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	0/1:95:52,43:52:1845:43:1544:-110.655,0,-137.73	0/1:39:16,23:16:568:23:828:-63.1039,0,-39.6953	1/1:60:0,60:0:0:60:2145:-193.316,-18.0618,0	1/1:56:0,56:0:0:56:2003:-180.543,-16.8577,0	0/1:34:12,22:12:432:22:792:-61.3707,0,-28.9723	0/1:90:45,45:45:1616:45:1603:-117.466,0,-118.318	0/1:44:24,20:24:860:20:720:-51.8835,0,-64.4671	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:66:0,66:0:0:66:2359:-212.568,-19.868,0
chr02	15261662	.	G	A	16930.1	PASS	AB=0.462693;ABP=30.3919;AC=40;AF=0.212766;AN=188;AO=1059;CIGAR=1X;DP=5431;DPB=5431;DPRA=1.00819;EPP=2302.6;EPPR=9490.17;GTI=1;LEN=1;MEANALT=1.02222;MQM=59.5496;MQMR=59.9659;NS=94;NUMALT=1;ODDS=0.729547;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37896;QR=155722;RO=4369;RPL=1059;RPP=2302.6;RPPR=9490.17;RPR=0;RUN=1;SAF=0;SAP=2302.6;SAR=1059;SRF=0;SRP=9490.17;SRR=4369;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.329	0/1:63:42,21:42:1508:21:752:-49.0332,0,-117.05	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.709	0/1:46:24,22:24:856:22:780:-56.4023,0,-63.5137	0/1:32:24,8:24:852:8:288:-16.6344,0,-67.3674	0/1:55:32,23:32:1120:23:798:-55.5705,0,-84.551	0/0:86:84,2:84:2975:2:72:0,-19.0519,-261.144	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:41:19,22:19:680:22:779:-58.0376,0,-49.1869	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:56:29,27:29:1019:27:972:-70.9402,0,-75.152	0/1:56:24,32:24:856:32:1144:-86.3718,0,-60.5034	0/1:37:19,18:19:680:18:640:-46.7866,0,-50.3911	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.054	0/1:42:20,22:20:720:22:792:-58.9442,0,-52.4846	0/0:33:33,0:33:1170:0:0:0,-9.93399,-105.592	0/1:145:95,50:95:3370:50:1796:-118.226,0,-259.868	0/1:66:43,23:43:1539:23:824:-54.5008,0,-118.934	0/0:57:56,0:56:1995:0:0:0,-16.8577,-179.464	0/0:19:19,0:19:667:0:0:0,-5.71957,-60.3546	0/0:28:27,1:27:964:1:36:0,-4.83056,-83.4767	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:189:189,0:189:6743:0:0:0,-56.8947,-606.946	0/0:92:92,0:92:3276:0:0:0,-27.6948,-294.691	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:79:47,32:47:1676:32:1144:-79.4858,0,-127.334	0/1:75:49,26:49:1752:26:928:-61.2564,0,-135.387	0/1:48:18,30:18:644:30:1072:-82.32,0,-43.8412	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:34:15,19:15:531:19:684:-51.6544,0,-37.8869	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:163:70,93:70:2494:93:3332:-250.998,0,-175.642	0/1:106:49,57:49:1752:57:2044:-152.322,0,-126.055	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:95:94,0:94:3348:0:0:0,-28.2968,-301.179	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:50:30,20:30:1072:20:716:-49.7159,0,-81.741	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:39:20,19:20:716:19:671:-48.9753,0,-53.0275	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:85:35,50:35:1252:50:1788:-135.606,0,-87.3975	0/0:106:106,0:106:3776:0:0:0,-31.9092,-340.041	0/0:88:88,0:88:3115:0:0:0,-26.4906,-280.576	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:94:60,33:60:2136:33:1188:-79.0175,0,-164.3	0/1:27:17,10:17:608:10:360:-24.6165,0,-46.9242	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:56:35,21:35:1252:21:756:-51.0709,0,-96.1274	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:46:27,19:27:951:19:679:-47.5911,0,-72.0569	0/1:34:16,18:16:572:18:644:-48.0474,0,-41.5784	0/0:107:105,2:105:3750:2:72:0,-25.3735,-330.863	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:138:138,0:138:4911:0:0:0,-41.5421,-442.144	0/1:91:52,39:52:1852:39:1387:-97.7335,0,-139.566	0/0:60:55,5:55:1980:5:180:0,-1.50973,-161.922	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:71:35,36:35:1260:36:1296:-95.5699,0,-92.3324	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:24:12,12:12:419:12:432:-31.9918,0,-30.818	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.585	0/1:56:33,23:33:1157:23:828:-57.9764,0,-87.5765	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4753	0/0:58:58,0:58:2058:0:0:0,-17.4597,-185.49	0/1:32:13,19:13:460:19:676:-51.5314,0,-32.1024	0/0:104:104,0:104:3707:0:0:0,-31.3071,-333.777	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.666	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/1:44:24,20:24:852:20:716:-51.5224,0,-63.7551	0/0:178:178,0:178:6307:0:0:0,-53.5833,-567.728	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.866	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.225	0/1:94:43,51:43:1535:51:1832:-136.864,0,-110.146	0/1:38:22,16:22:771:16:576:-40.7194,0,-58.2712	0/0:59:59,0:59:2074:0:0:0,-17.7608,-186.93	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.13	0/1:35:22,13:22:784:13:454:-30.6032,0,-60.3479	0/1:92:45,47:45:1595:47:1684:-123.831,0,-116.144	0/1:43:19,24:19:676:24:860:-64.7682,0,-48.2237	0/0:65:64,1:64:2280:1:36:0,-15.9687,-201.864	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.86
chr02	15261668	.	T	C	16729.5	PASS	AB=0.463556;ABP=28.9676;AC=40;AF=0.212766;AN=188;AO=1051;CIGAR=1X;DP=5398;DPB=5398;DPRA=1.05161;EPP=2285.23;EPPR=9438.06;GTI=1;LEN=1;MEANALT=1.04444;MQM=59.6403;MQMR=59.9535;NS=94;NUMALT=1;ODDS=0.695686;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37453;QR=155200;RO=4345;RPL=1051;RPP=2285.23;RPPR=9438.06;RPR=0;RUN=1;SAF=0;SAP=2285.23;SAR=1051;SRF=0;SRP=9438.06;SRR=4345;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/0:78:78,0:78:2761:0:0:0,-23.4803,-248.732	0/1:64:42,22:42:1508:22:784:-51.6098,0,-116.749	0/0:83:83,0:83:2938:0:0:0,-24.9855,-264.652	0/1:44:23,21:23:824:21:744:-54.0344,0,-61.238	0/1:31:23,8:23:824:8:280:-16.2074,0,-65.1514	0/1:52:31,21:31:1116:21:756:-52.7067,0,-85.0981	0/0:84:83,1:83:2953:1:36:0,-21.6882,-262.397	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:42:19,23:19:684:23:815:-60.9753,0,-49.2471	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	0/1:57:30,27:30:1072:27:968:-70.2787,0,-79.6053	0/1:56:24,32:24:856:32:1148:-86.6811,0,-60.5034	0/1:37:19,18:19:680:18:644:-47.1479,0,-50.3911	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.411	0/1:43:20,23:20:720:23:807:-59.9872,0,-52.1836	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.264	0/1:141:93,48:93:3313:48:1709:-111.645,0,-255.943	0/1:64:42,22:42:1489:22:792:-52.2252,0,-115.037	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:18:18,0:18:625:0:0:0,-5.41854,-56.5725	0/0:28:27,1:27:972:1:36:0,-4.83056,-84.195	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:180:180,0:180:6418:0:0:0,-54.1854,-577.707	0/0:93:93,0:93:3305:0:0:0,-27.9958,-297.478	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:77:47,30:47:1672:30:1076:-73.9712,0,-127.576	0/1:76:50,26:50:1792:26:932:-61.316,0,-138.684	0/1:48:18,29:18:636:29:1025:-78.0322,0,-43.0604	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.852	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:33:13,20:13:464:20:716:-54.8328,0,-32.1635	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:163:70,93:70:2516:93:3310:-249.019,0,-177.623	0/1:107:50,57:50:1765:57:2044:-152.021,0,-126.921	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.211	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:51:30,21:30:1076:21:741:-51.6582,0,-81.8003	0/1:28:15,13:15:540:13:464:-33.6687,0,-40.5077	0/1:38:19,19:19:680:19:667:-48.9152,0,-50.09	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/1:85:35,50:35:1256:50:1777:-134.614,0,-87.7577	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/0:89:89,0:89:3161:0:0:0,-26.7917,-284.715	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:93:59,33:59:2116:33:1180:-78.4526,0,-162.654	0/1:27:17,10:17:608:10:360:-24.6165,0,-46.9242	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9522	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	0/1:57:36,21:36:1288:21:741:-49.8488,0,-98.574	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:45:25,20:25:896:20:720:-51.5806,0,-67.414	0/1:33:16,17:16:576:17:612:-45.4712,0,-42.241	0/0:107:106,1:106:3804:1:36:0,-28.6119,-338.959	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:133:133,0:133:4716:0:0:0,-40.037,-424.596	0/1:91:53,38:53:1888:38:1356:-94.9458,0,-142.805	0/0:56:52,4:52:1872:4:140:0,-3.9131,-155.815	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.859	0/1:71:36,35:36:1292:35:1241:-90.6193,0,-95.2106	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:25:12,13:12:428:13:468:-34.9293,0,-31.3331	0/0:80:80,0:80:2826:0:0:0,-24.0824,-254.566	0/1:57:34,23:34:1205:23:820:-56.9587,0,-91.5952	0/0:24:24,0:24:841:0:0:0,-7.22472,-76.0054	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:30:11,19:11:392:19:680:-52.4901,0,-26.5892	0/0:101:101,0:101:3620:0:0:0,-30.404,-325.949	0/0:127:126,1:126:4520:1:36:0,-34.6325,-403.368	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:42:22,20:22:792:20:705:-51.1295,0,-58.9624	0/0:180:180,0:180:6402:0:0:0,-54.1854,-576.267	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.749	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:93:41,52:41:1476:52:1868:-140.403,0,-105.14	0/1:39:23,16:23:824:16:572:-40.0569,0,-62.7431	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:35:22,13:22:792:13:443:-29.6104,0,-61.0696	0/1:91:45,46:45:1616:46:1640:-120.364,0,-118.336	0/1:44:20,24:20:720:24:852:-63.7471,0,-51.8835	0/0:64:64,0:64:2270:0:0:0,-19.2659,-204.559	0/0:65:65,0:65:2331:0:0:0,-19.5669,-210.049
chr02	15261681	.	GTT	ATC,ATT	157930	PASS	AB=0.545424,0.453908;ABP=56.669,58.2588;AC=146,42;AF=0.776596,0.223404;AN=188;AO=5960,1368;CIGAR=1X1M1X,1X2M;DP=7339;DPB=7340.33;DPRA=78.9032,1.03918;EPP=12945,2973.58;EPPR=0;GTI=4;LEN=3,1;MEANALT=1.60215,2.12766;MQM=59.7383,59.5651;MQMR=0;NS=94;NUMALT=2;ODDS=1.50665;PAIRED=0,0;PAIREDR=0;PAO=2,1;PQA=68,0;PQR=0;PRO=1;QA=210840,48963;QR=0;RO=0;RPL=0,0;RPP=12945,2973.58;RPPR=0;RPR=5960,1368;RUN=1,1;SAF=5960,1368;SAP=12945,2973.58;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20,0:0:0:20,0:710,0:-64.2257,-6.0206,0,-64.2257,-6.0206,-64.2257	1/1:145:0,144,0:0:0:144,0:5096,0:-458.422,-43.3483,0,-458.422,-43.3483,-458.422	1/2:74:0,42,32:0:0:42,32:1488,1152:-215.531,-94.3559,-81.7126,-121.532,0,-111.899	1/1:194:0,194,0:0:0:194,0:6880,0:-618.952,-58.3998,0,-618.952,-58.3998,-618.952	1/2:76:0,41,35:0:0:41,35:1470,1256:-222.703,-102.808,-90.4655,-120.254,0,-109.718	1/2:54:0,34,20:0:0:34,20:1210,716:-157.355,-58.7462,-48.5112,-98.9655,0,-92.9449	1/2:82:0,47,35:0:0:47,35:1681,1256:-239.878,-102.808,-88.6593,-137.429,0,-126.893	1/1:202:0,202,0:0:0:202,0:7110,0:-639.053,-60.8081,0,-639.053,-60.8081,-639.053	1/1:67:0,67,0:0:0:67,0:2376,0:-214.097,-20.169,0,-214.097,-20.169,-214.097	1/1:102:0,102,0:0:0:102,0:3609,0:-325.018,-30.7051,0,-325.018,-30.7051,-325.018	1/1:33:0,33,0:0:0:33,0:1181,0:-106.587,-9.93399,0,-106.587,-9.93399,-106.587	1/2:65:0,34,31:0:0:34,31:1209,1116:-189.923,-91.418,-81.1829,-98.8626,0,-89.5306	1/1:67:0,67,0:0:0:67,0:2388,0:-215.177,-20.169,0,-215.177,-20.169,-215.177	1/2:66:0,22,44:0:0:22,44:788,1566:-192.113,-127.848,-121.225,-64.6223,0,-51.377	1/2:52:0,26,26:0:0:26,26:918,928:-150.68,-75.9251,-68.0983,-75.1095,0,-67.2827	1/2:39:0,18,21:0:0:18,21:633,756:-113.425,-61.9058,-56.4872,-51.8742,0,-45.5525	1/1:73:0,73,0:0:0:73,0:2598,0:-233.571,-21.9752,0,-233.571,-21.9752,-233.571	1/2:57:0,20,37:0:0:20,37:703,1332:-166.262,-109.044,-103.024,-57.5724,0,-46.4342	1/1:22:0,22,0:0:0:22,0:786,0:-71.0647,-6.62266,0,-71.0647,-6.62266,-71.0647	1/2:144:0,81,63:0:0:81,63:2858,2256:-416.981,-184.263,-159.88,-233.074,0,-214.109	1/2:142:0,77,65:0:0:77,65:2726,2315:-410.756,-188.754,-165.575,-222.357,0,-202.79	1/1:117:0,117,0:0:0:117,0:4114,0:-370.235,-35.2205,0,-370.235,-35.2205,-370.235	1/1:111:0,109,1:0:0:109,1:3784,36:-340.381,-32.8123,0,-337.444,-29.8749,-337.143	1/2:85:0,76,9:0:0:76,9:2718,305:-246.699,-25.0673,-2.18904,-221.972,0,-219.263	1/1:57:0,57,0:0:0:57,0:1999,0:-180.059,-17.1587,0,-180.059,-17.1587,-180.059	1/1:220:0,217,1:0:0:217,1:7625,32:-685.091,-65.3235,0,-682.513,-62.7477,-682.212	1/1:129:0,128,0:0:0:128,0:4555,0:-409.836,-38.5318,0,-409.836,-38.5318,-409.836	1/1:27:0,27,0:0:0:27,0:960,0:-86.7147,-8.12781,0,-86.7147,-8.12781,-86.7147	1/2:159:0,90,69:0:0:90,69:3198,2476:-462.912,-202.317,-175.225,-260.951,0,-240.18	1/2:138:0,85,53:0:0:85,53:3011,1895:-400.101,-154.826,-129.238,-245.631,0,-229.676	1/2:112:0,56,56:0:0:56,56:1991,2001:-325.745,-163.5,-146.643,-162.601,0,-145.743	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/2:2:0,1,1:0:0:1,1:34,36:-6.04527,-3.29724,-2.99621,-3.09788,0,-2.79685	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:155:0,82,73:0:0:82,73:2912,2605:-449.663,-212.41,-187.726,-237.608,0,-215.633	1/2:96:0,53,43:0:0:53,43:1879,1532:-278.032,-124.953,-108.999,-153.433,0,-140.489	1/1:37:0,37,0:0:0:37,0:1315,0:-118.652,-11.1381,0,-118.652,-11.1381,-118.652	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:196:0,196,0:0:0:196,0:6917,0:-622.495,-59.0019,0,-622.495,-59.0019,-622.495	1/1:21:0,21,0:0:0:21,0:740,0:-66.9222,-6.32163,0,-66.9222,-6.32163,-66.9222	1/2:108:0,71,36:0:0:71,36:2529,1296:-311.928,-105.824,-84.4512,-206.18,0,-195.343	1/2:69:0,34,35:0:0:34,35:1211,1252:-201.067,-102.368,-92.133,-99.0559,0,-88.5198	1/2:52:0,27,25:0:0:27,25:953,896:-151.036,-73.4346,-65.3068,-77.9568,0,-70.431	1/1:62:0,62,0:0:0:62,0:2210,0:-199.162,-18.6639,0,-199.162,-18.6639,-199.162	1/2:90:0,50,40:0:0:50,40:1770,1401:-258.197,-114.335,-99.2835,-144.213,0,-132.172	1/1:171:0,168,1:0:0:168,1:5913,36:-531.812,-50.573,0,-528.874,-47.6223,-528.573	1/1:71:0,71,0:0:0:71,0:2520,0:-226.68,-21.3731,0,-226.68,-21.3731,-226.68	1/1:187:0,187,0:0:0:187,0:6629,0:-596.534,-56.2926,0,-596.534,-56.2926,-596.534	1/2:65:0,48,17:0:0:48,17:1688,612:-187.675,-50.2816,-35.8322,-137.751,0,-132.634	1/2:10:0,7,3:0:0:7,3:238,108:-28.4624,-9.17208,-7.06487,-19.6442,0,-18.7411	1/1:86:0,86,0:0:0:86,0:3057,0:-275.342,-25.8886,0,-275.342,-25.8886,-275.342	1/1:49:0,49,0:0:0:49,0:1705,0:-153.727,-14.7505,0,-153.727,-14.7505,-153.727	1/2:5:0,1,4:0:0:1,4:27,144:-14.2203,-12.1095,-11.8085,-2.39875,0,-1.19463	1/2:97:0,60,37:0:0:60,37:2105,1320:-279.235,-107.96,-89.8985,-171.629,0,-160.49	1/1:36:0,36,0:0:0:36,0:1284,0:-115.847,-10.8371,0,-115.847,-10.8371,-115.847	1/2:7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chr02	15261718	.	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chr02	15261746	.	T	C	62374.7	PASS	AB=0.486448;ABP=15.3699;AC=40;AF=0.212766;AN=188;AO=3787;CIGAR=1X;DP=16748;DPB=16748;DPRA=1.98613;EPP=572.977;EPPR=3674.65;GTI=0;LEN=1;MEANALT=1.01961;MQM=30.4156;MQMR=55.9197;NS=94;NUMALT=1;ODDS=0.882105;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135401;QR=464780;RO=12959;RPL=1395;RPP=572.977;RPPR=3668.38;RPR=2392;RUN=1;SAF=0;SAP=8226.38;SAR=3787;SRF=2;SRP=28125.8;SRR=12957;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:49:49,0:49:1745:0:0:0,-14.7505,-156.975	0/0:72:72,0:72:2592:0:0:0,-21.6742,-232.872	0/1:123:58,65:58:2084:65:2327:-122.471,0,-150.077	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.098	0/1:37:19,18:19:684:18:648:-35.7146,0,-50.3526	0/1:35:19,16:19:684:16:576:-29.1389,0,-51.2857	0/1:56:32,24:32:1148:24:849:-48.0287,0,-86.7084	0/0:100:100,0:100:3585:0:0:0,-30.103,-322.078	0/0:79:79,0:79:2832:0:0:0,-23.7814,-254.37	0/0:62:62,0:62:2232:0:0:0,-18.6639,-200.838	0/0:465:464,1:464:16672:1:36:0,-136.43,-1494.28	0/1:100:45,55:45:1620:55:1963:-105.338,0,-115.43	0/0:59:59,0:59:2124:0:0:0,-17.7608,-190.61	0/1:64:30,34:30:1076:34:1215:-68.9858,0,-77.2495	0/1:50:25,25:25:885:25:900:-52.7578,0,-64.8147	0/1:66:43,23:43:1548:23:828:-39.7947,0,-119.478	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.399	0/1:22:10,12:10:360:12:432:-23.2019,0,-25.9843	0/0:174:174,0:174:6244:0:0:0,-52.3792,-559.603	0/1:68:37,31:37:1317:31:1097:-63.1093,0,-98.2738	0/1:97:50,47:50:1796:47:1688:-92.7901,0,-132.507	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.434	0/0:46:44,2:44:1584:2:72:0,-8.04376,-136.834	0/0:53:52,1:52:1872:1:36:0,-13.0518,-165.579	0/0:73:73,0:73:2609:0:0:0,-21.9752,-234.521	0/0:91:91,0:91:3272:0:0:0,-27.3937,-293.541	0/0:150:149,0:149:5347:0:0:0,-44.8535,-478.805	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3871	0/1:113:44,69:44:1580:69:2465:-159.604,0,-108.446	0/1:70:50,20:50:1800:20:716:-31.2131,0,-140.942	0/1:52:23,29:23:824:29:1036:-60.683,0,-58.7125	0/0:702:701,1:701:25115:1:36:0,-207.802,-2249.83	0/0:810:810,0:810:29009:0:0:0,-243.834,-2604.51	0/0:563:560,3:560:20086:3:108:0,-161.124,-1788.93	0/1:1189:587,602:587:21046:602:21515:-1121.99,0,-1529.04	0/0:1004:1001,3:1001:35933:3:108:0,-293.878,-3210.14	0/1:126:52,74:52:1868:74:2646:-169.528,0,-129.964	0/1:52:30,22:30:1080:22:777:-41.1884,0,-81.8001	0/0:348:348,0:348:12497:0:0:0,-104.758,-1118.69	0/1:287:143,144:143:5136:144:5176:-289.299,0,-373.946	0/0:46:46,0:46:1656:0:0:0,-13.8474,-148.284	0/0:163:163,0:163:5860:0:0:0,-49.0679,-525.812	0/1:120:49,71:49:1764:71:2552:-149.546,0,-122.771	0/1:34:17,17:17:612:17:612:-36.8049,0,-45.028	0/1:40:14,26:14:504:26:932:-59.3472,0,-33.6516	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.202	0/1:50:26,24:26:936:24:864:-44.3241,0,-69.3179	0/0:79:79,0:79:2831:0:0:0,-23.7814,-254.237	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.055	0/0:71:71,0:71:2533:0:0:0,-21.3731,-227.28	0/1:78:50,28:50:1792:28:1008:-56.9092,0,-137.996	0/1:552:286,266:286:10284:266:9467:-549.382,0,-757.744	0/0:72:72,0:72:2580:0:0:0,-21.6742,-230.387	0/0:43:43,0:43:1514:0:0:0,-12.9443,-136.503	0/1:337:195,142:195:7004:142:5073:-247.761,0,-525.666	0/1:86:47,39:47:1692:39:1404:-75.5753,0,-125.729	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8974	0/1:534:258,276:258:9219:276:9867:-609.065,0,-668.26	0/1:601:263,338:263:9406:338:12080:-770.708,0,-663.627	0/1:73:46,27:46:1648:27:972:-48.2502,0,-125.917	0/0:86:85,1:85:3060:1:36:0,-22.834,-272.397	0/0:417:417,0:417:14937:0:0:0,-125.53,-1341.82	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.238	0/1:79:46,33:46:1656:33:1188:-65.1122,0,-125.424	0/0:47:45,2:45:1616:2:72:0,-8.63316,-140.006	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.8604	0/1:54:17,37:17:612:37:1309:-83.9489,0,-39.151	0/0:147:147,0:147:5280:0:0:0,-44.2514,-474.94	0/1:657:379,277:379:13609:277:9856:-518.59,0,-1023.35	0/0:44:44,0:44:1584:0:0:0,-13.2453,-141.7	0/1:32:13,19:13:464:19:684:-44.3857,0,-32.4641	0/0:728:728,0:728:26030:0:0:0,-219.15,-2338.98	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.444	0/1:77:43,34:43:1544:34:1220:-61.35,0,-115.927	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.471	0/0:61:60,1:60:2130:1:36:0,-15.3083,-188.833	0/0:66:66,0:66:2376:0:0:0,-19.868,-213.379	0/0:70:70,0:70:2512:0:0:0,-21.0721,-225.937	0/0:925:923,2:923:33041:2:72:0,-272.547,-2954.49	0/0:57:56,1:56:2016:1:36:0,-14.4225,-178.687	0/1:40:24,16:24:864:16:576:-27.3702,0,-65.0198	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.745	0/0:48:48,0:48:1724:0:0:0,-14.4494,-154.749	0/0:82:82,0:82:2948:0:0:0,-24.6845,-264.913	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.203	0/1:91:42,49:42:1512:49:1747:-107.081,0,-108.726	0/1:11:9,2:9:324:2:72:-1.88745,0,-26.045	0/0:28:28,0:28:1004:0:0:0,-8.42884,-89.0522	0/0:54:54,0:54:1936:0:0:0,-16.2556,-172.726	0/1:545:308,237:308:11056:237:8524:-454.993,0,-826.672	0/1:982:527,455:527:18944:455:16249:-884.709,0,-1403.37	0/1:68:22,46:22:788:46:1643:-104.194,0,-50.6728	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5469	0/0:69:69,0:69:2476:0:0:0,-20.7711,-222.819
chr02	15261914	.	T	A	355177	PASS	AB=0.541022;ABP=104.024;AC=147;AF=0.781915;AN=188;AO=13050;CIGAR=1X;DP=16263;DPB=16263;DPRA=0;EPP=28332;EPPR=6966.92;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9833;MQMR=59.9981;NS=94;NUMALT=1;ODDS=2.42805;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=463575;QR=112878;RO=3207;RPL=6953;RPP=124.935;RPPR=196.814;RPR=6097;RUN=1;SAF=6952;SAP=124.366;SAR=6098;SRF=1871;SRP=196.814;SRR=1336;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:78:0,78:0:0:78:2775:-249.992,-23.4803,0	1/1:150:0,150:0:0:150:5317:-478.666,-45.1545,0	0/1:319:142,177:142:5021:177:6278:-469.087,0,-356.013	1/1:377:0,377:0:0:377:13418:-1207.42,-113.488,0	0/1:41:19,22:19:676:22:788:-58.9026,0,-48.8258	0/1:61:30,31:30:1071:31:1112:-82.0285,0,-78.3388	0/1:206:83,123:83:2944:123:4383:-332.633,0,-203.181	1/1:325:0,325:0:0:325:11524:-1037.03,-97.8348,0	1/1:207:0,207:0:0:207:7360:-662.452,-62.3132,0	1/1:185:0,185:0:0:185:6539:-588.597,-55.6906,0	1/1:136:0,135:0:0:135:4770:-429.14,-40.6391,0	0/1:204:112,92:112:3931:92:3214:-228.062,0,-292.577	1/1:160:0,160:0:0:160:5654:-508.983,-48.1648,0	0/1:177:88,89:88:3095:89:3146:-230.085,0,-225.496	0/1:127:64,63:64:2170:63:2243:-163.902,0,-157.333	0/1:140:69,71:69:2395:71:2524:-185.266,0,-173.663	1/1:109:0,109:0:0:109:3877:-349.125,-32.8123,0	0/1:82:41,41:41:1450:41:1456:-106.652,0,-106.11	1/1:90:0,90:0:0:90:3169:-285.42,-27.0927,0	0/1:426:197,229:197:6941:229:8100:-600.784,0,-496.528	0/1:261:127,134:127:4465:134:4777:-351.518,0,-323.458	1/1:202:0,202:0:0:202:7223:-650.122,-60.8081,0	1/1:199:0,199:0:0:199:7042:-633.846,-59.905,0	0/1:124:21,103:21:721:103:3649:-291.286,0,-27.8788	1/1:141:0,141:0:0:141:5004:-450.508,-42.4452,0	1/1:447:1,446:1:36:446:15872:-1424.51,-130.962,0	1/1:443:1,442:1:32:442:15723:-1411.57,-130.157,0	1/1:58:0,58:0:0:58:2044:-184.23,-17.4597,0	0/1:532:238,294:238:8417:294:10446:-779.918,0,-597.397	0/1:277:106,171:106:3761:171:6078:-463.738,0,-255.305	0/1:182:97,85:97:3436:85:3011:-216.435,0,-254.666	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:11:0,11:0:0:11:383:-34.8032,-3.31133,0	0/1:361:147,212:147:5114:212:7508:-567.339,0,-351.984	0/1:97:49,48:49:1727:48:1712:-125.166,0,-126.514	1/1:102:0,102:0:0:102:3617:-325.737,-30.7051,0	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:261:0,261:0:0:261:9312:-838.048,-78.5688,0	1/1:40:0,40:0:0:40:1418:-127.916,-12.0412,0	0/1:251:120,131:120:4235:131:4639:-342.117,0,-305.774	0/1:140:66,74:66:2325:74:2617:-193.633,0,-167.365	0/1:109:46,63:46:1610:63:2232:-168.33,0,-112.375	1/1:196:0,196:0:0:196:6995:-629.616,-59.0019,0	0/1:183:67,116:67:2367:116:4118:-315.718,0,-158.2	1/1:336:12,324:12:428:324:11530:-998.72,-62.2873,0	1/1:159:0,159:0:0:159:5646:-508.262,-47.8638,0	1/1:225:0,225:0:0:225:7946:-715.169,-67.7318,0	0/1:185:86,99:86:3054:99:3511:-260.511,0,-219.399	0/1:6:2,4:2:72:4:139:-11.046,0,-5.03054	1/1:223:0,223:0:0:223:7939:-714.537,-67.1297,0	1/1:174:0,174:0:0:174:6211:-559.084,-52.3792,0	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/1:234:109,125:109:3846:125:4446:-329.859,0,-275.899	1/1:82:0,82:0:0:82:2914:-262.495,-24.6845,0	0/1:17:10,7:10:360:7:243:-17.09,0,-27.6268	0/1:33:16,17:16:572:17:600:-44.3946,0,-41.8794	0/1:161:82,79:82:2888:79:2809:-204.584,0,-211.691	1/1:202:2,200:2:72:200:7097:-631.687,-53.9713,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:336:1,334:1:36:334:11876:-1065.11,-97.6066,0	0/1:235:105,130:105:3699:130:4616:-344.864,0,-262.372	1/1:117:7,110:7:248:110:3928:-331.049,-12.5563,0	1/1:163:0,163:0:0:163:5801:-522.204,-49.0679,0	0/1:329:146,183:146:5165:183:6493:-485.417,0,-365.954	1/1:401:4,396:4:144:396:14102:-1254.62,-107.458,0	0/1:109:48,61:48:1694:61:2157:-161.584,0,-119.932	1/1:80:1,79:1:36:79:2828:-251.161,-20.4841,0	0/1:88:51,37:51:1807:37:1324:-92.9715,0,-136.42	1/1:33:0,33:0:0:33:1150:-103.802,-9.93399,0	1/1:163:0,163:0:0:163:5744:-517.078,-49.0679,0	0/1:129:58,71:58:2034:71:2538:-189.839,0,-144.498	1/1:339:0,339:0:0:339:12042:-1083.41,-102.049,0	1/1:319:1,318:1:36:318:11339:-1016.79,-92.4303,0	1/1:110:0,110:0:0:110:3853:-346.964,-33.1133,0	1/1:299:0,299:0:0:299:10665:-959.76,-90.008,0	1/1:20:0,20:0:0:20:705:-63.7728,-6.0206,0	1/1:177:0,177:0:0:177:6288:-566.017,-53.2823,0	0/1:269:126,143:126:4429:143:5044:-373.133,0,-317.809	1/1:320:0,320:0:0:320:11413:-1027.05,-96.3296,0	1/1:107:2,104:2:72:104:3694:-325.829,-25.4347,0	1/1:190:1,189:1:36:189:6683:-597.955,-53.5974,0	1/1:92:0,92:0:0:92:3255:-293.171,-27.6948,0	0/1:266:133,133:133:4650:133:4739:-346.596,0,-338.594	0/1:49:24,25:24:836:25:887:-65.3976,0,-60.807	1/1:144:0,144:0:0:144:5147:-463.372,-43.3483,0	1/1:153:0,153:0:0:153:5416:-487.575,-46.0576,0	0/1:106:43,63:43:1518:63:2251:-170.943,0,-105.002	0/1:236:103,133:103:3586:133:4736:-355.356,0,-251.907	0/1:122:79,43:79:2764:43:1536:-101.807,0,-212.277	1/1:198:0,198:0:0:198:7055:-635.01,-59.6039,0	1/1:211:4,207:4:140:207:7348:-648.43,-50.5728,0
chr02	15265724	.	C	T	71212.5	PASS	AB=0.465777;ABP=26.6422;AC=146;AF=0.784946;AN=186;AO=3965;CIGAR=1X;DP=5217;DPB=5217;DPRA=0;EPP=8586.86;EPPR=2713.01;GTI=1;LEN=1;MEANALT=1;MQM=35.6361;MQMR=59.8922;NS=93;NUMALT=1;ODDS=0.0780821;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141787;QR=44764;RO=1252;RPL=3;RPP=8586.86;RPPR=2713.01;RPR=3962;RUN=1;SAF=3965;SAP=8612.9;SAR=0;SRF=1252;SRP=2721.69;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:792:-63.9859,-6.62266,0	1/1:38:0,38:0:0:38:1341:-105.586,-11.4391,0	0/1:40:26,14:26:932:14:504:-27.4301,0,-72.1543	1/1:196:1,195:1:36:195:6994:-555.092,-55.4036,0	0/1:49:35,14:35:1256:14:502:-28.7941,0,-98.5925	0/1:10:5,5:5:180:5:180:-12.4556,0,-13.5418	0/1:55:38,17:38:1360:17:608:-32.4046,0,-106.144	1/1:80:0,80:0:0:80:2842:-228.875,-24.0824,0	1/1:31:0,31:0:0:31:1116:-91.3056,-9.33193,0	1/1:53:0,53:0:0:53:1900:-150.678,-15.9546,0	1/1:18:0,18:0:0:18:633:-51.6026,-5.41854,0	0/1:34:15,19:15:528:19:676:-44.3204,0,-37.6163	1/1:30:0,30:0:0:30:1067:-86.6827,-9.0309,0	0/1:22:13,9:13:468:9:324:-20.9134,0,-35.837	0/1:37:14,23:14:500:23:824:-54.8633,0,-34.1981	0/1:24:10,14:10:356:14:500:-37.092,0,-25.1565	1/1:16:0,16:0:0:16:572:-45.4072,-4.81648,0	0/1:18:13,5:13:460:5:180:-9.78056,0,-36.3168	1/1:9:0,9:0:0:9:320:-26.4158,-2.70927,0	0/1:128:46,82:46:1640:82:2952:-198.244,0,-109.357	0/1:118:62,56:62:2208:56:1999:-139.39,0,-163.464	1/1:60:0,60:0:0:60:2144:-163.858,-18.0618,0	1/1:57:1,56:1:36:56:2008:-155.882,-13.5604,0	0/1:31:4,27:4:144:27:968:-76.4074,0,-3.98169	1/1:33:1,32:1:36:32:1144:-95.3575,-6.33572,0	1/1:168:1,167:1:36:167:5984:-464.269,-46.9748,0	1/1:128:0,128:0:0:128:4577:-399.942,-38.5318,0	1/1:12:0,12:0:0:12:419:-37.1761,-3.61236,0	0/1:227:99,128:99:3544:128:4582:-288.272,0,-250.83	0/1:106:54,52:54:1928:52:1863:-132.406,0,-141.886	0/1:101:51,50:51:1816:50:1788:-111.419,0,-133.317	1/1:12:0,12:0:0:12:432:-33.7067,-3.61236,0	1/1:3:0,3:0:0:3:108:-9.07279,-0.90309,0	1/1:6:0,6:0:0:6:216:-16.7173,-1.80618,0	0/1:7:3,4:3:108:4:140:-9.22605,0,-7.96796	1/1:8:0,8:0:0:8:284:-23.4939,-2.40824,0	0/1:101:51,50:51:1832:50:1791:-108.917,0,-134.753	0/1:120:93,27:93:3331:27:972:-49.2194,0,-263.88	1/1:13:0,13:0:0:13:460:-36.2809,-3.91339,0	.:.:.:.:.:.:.:.	1/1:85:0,85:0:0:85:3042:-266.854,-25.5876,0	1/1:5:0,5:0:0:5:180:-16.2662,-1.50515,0	0/1:102:67,35:67:2404:35:1237:-75.7702,0,-185.907	0/1:32:22,10:22:792:10:360:-18.7775,0,-61.9727	0/1:25:10,15:10:360:15:536:-35.3123,0,-25.2186	1/1:73:0,73:0:0:73:2613:-201.915,-21.9752,0	0/1:56:32,24:32:1148:24:856:-52.3264,0,-86.7667	1/1:112:0,112:0:0:112:3997:-317.603,-33.7154,0	1/1:46:0,46:0:0:46:1644:-128.53,-13.8474,0	1/1:87:1,86:1:36:86:3057:-237.167,-22.6228,0	0/1:92:44,48:44:1580:48:1691:-104.853,0,-114.79	0/1:10:6,4:6:212:4:144:-8.78391,0,-16.4145	1/1:73:0,73:0:0:73:2620:-208.806,-21.9752,0	1/1:39:0,39:0:0:39:1392:-109.825,-11.7402,0	0/1:12:6,6:6:216:6:216:-14.2415,0,-16.1782	0/1:101:44,57:44:1580:57:2027:-148.17,0,-112.086	1/1:12:1,11:1:36:11:396:-28.9116,-0.0140851,0	0/1:5:2,3:2:72:3:108:-7.24104,0,-5.33157	0/1:12:9,3:9:320:3:108:-4.24709,0,-25.5266	0/1:51:26,25:26:936:25:896:-62.5793,0,-69.2054	1/1:40:0,40:0:0:40:1440:-114.644,-12.0412,0	1/1:1:0,1:0:0:1:36:-3.18762,-0.30103,0	1/1:204:0,204:0:0:204:7304:-574.018,-61.4101,0	0/1:136:80,56:80:2859:56:2012:-118.949,0,-216.607	1/1:33:0,33:0:0:33:1184:-103.245,-9.93399,0	1/1:78:0,78:0:0:78:2752:-217.433,-23.4803,0	0/1:118:65,53:65:2324:53:1895:-113.57,0,-173.899	1/1:71:0,71:0:0:71:2548:-201.218,-21.3731,0	0/1:11:3,8:3:108:8:288:-21.4279,0,-6.76384	1/1:30:0,30:0:0:30:1076:-87.1127,-9.0309,0	0/1:44:31,13:31:1112:13:468:-23.339,0,-87.146	1/1:4:0,4:0:0:4:140:-11.3651,-1.20412,0	1/1:83:1,82:1:36:82:2920:-232.665,-21.4121,0	0/1:57:28,29:28:1008:29:1036:-65.4687,0,-73.8749	1/1:56:1,55:1:36:55:1969:-167.867,-13.2594,0	1/1:108:0,108:0:0:108:3876:-308.337,-32.5112,0	1/1:28:0,28:0:0:28:1008:-82.3445,-8.42884,0	1/1:97:0,97:0:0:97:3476:-276.927,-29.1999,0	1/1:6:0,6:0:0:6:216:-17.3864,-1.80618,0	1/1:78:1,77:1:36:77:2768:-237.978,-19.8821,0	0/1:83:48,35:48:1701:35:1253:-76.0881,0,-128.347	1/1:143:1,142:1:36:142:5091:-398.347,-39.449,0	1/1:23:0,23:0:0:23:828:-66.3026,-6.92369,0	1/1:33:0,33:0:0:33:1175:-93.5864,-9.93399,0	1/1:25:0,25:0:0:25:885:-71.3531,-7.52575,0	0/1:58:39,19:39:1392:19:684:-37.3674,0,-108.119	0/1:13:8,5:8:284:5:156:-8.06879,0,-21.99	1/1:25:0,25:0:0:25:885:-71.241,-7.52575,0	1/1:32:0,32:0:0:32:1143:-92.0794,-9.63296,0	0/1:7:3,4:3:99:4:144:-10.7082,0,-7.12937	0/1:31:12,19:12:414:19:680:-50.4636,0,-28.2555	0/1:39:24,15:24:856:15:540:-31.6115,0,-65.6209	1/1:125:0,125:0:0:125:4465:-357.765,-37.6288,0	1/1:46:1,45:1:36:45:1620:-123.1,-10.2491,0
chr02	15265925	.	A	T	34608.8	PASS	AB=0.53418;ABP=34.1828;AC=39;AF=0.214286;AN=182;AO=1659;CIGAR=1X;DP=6953;DPB=6953;DPRA=1.25855;EPP=3605.48;EPPR=11498.8;GTI=1;LEN=1;MEANALT=1;MQM=44.9747;MQMR=48.2756;NS=91;NUMALT=1;ODDS=0.386879;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59358;QR=189495;RO=5294;RPL=645;RPP=181.232;RPPR=702.621;RPR=1014;RUN=1;SAF=1014;SAP=181.232;SAR=645;SRF=3300;SRP=702.621;SRR=1994;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:720:0:0:0,-6.0206,-61.1549	0/0:40:40,0:40:1428:0:0:0,-12.0412,-123.998	0/1:72:31,41:31:1108:41:1472:-91.1014,0,-74.2684	0/0:206:206,0:206:7400:0:0:0,-62.0122,-657.536	0/1:22:13,9:13:468:9:324:-18.2332,0,-34.1403	0/1:23:6,17:6:216:17:612:-41.1803,0,-12.2201	0/1:134:59,75:59:2116:75:2672:-191.45,0,-148.069	0/0:61:61,0:61:2177:0:0:0,-18.3628,-187.22	0/0:15:15,0:15:532:0:0:0,-4.51545,-44.7002	0/0:80:80,0:80:2868:0:0:0,-24.0824,-256.634	0/0:96:95,1:95:3416:1:36:0,-25.5527,-299.006	0/1:57:30,27:30:1080:27:972:-57.6126,0,-77.1681	0/0:40:40,0:40:1436:0:0:0,-12.0412,-124.116	0/1:56:26,30:26:936:30:1080:-68.7425,0,-64.2775	0/1:100:51,49:51:1836:49:1760:-123.123,0,-131.599	0/1:31:14,17:14:500:17:612:-39.7827,0,-32.7481	0/0:39:39,0:39:1385:0:0:0,-11.7402,-118.981	0/1:35:19,16:19:684:16:576:-33.9279,0,-49.3319	0/0:34:32,2:32:1152:2:72:0,-4.06732,-93.7719	0/1:201:94,107:94:3380:107:3840:-271.333,0,-239.931	0/1:59:30,29:30:1072:29:1032:-66.3012,0,-75.244	0/0:109:109,0:109:3882:0:0:0,-32.8123,-345.876	0/0:85:85,0:85:3037:0:0:0,-25.5875,-271.049	0/0:33:33,0:33:1158:0:0:0,-9.93399,-99.0539	0/0:32:32,0:32:1144:0:0:0,-9.63296,-98.0209	0/0:259:259,0:259:9216:0:0:0,-77.9668,-819.179	0/0:73:73,0:73:2612:0:0:0,-21.9752,-226.205	0/0:19:19,0:19:680:0:0:0,-5.71957,-59.164	0/1:274:107,167:107:3827:167:5950:-443.859,0,-259.155	0/1:62:22,40:22:777:40:1440:-97.3333,0,-48.2491	0/1:128:59,69:59:2116:69:2476:-175.321,0,-149.051	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.5978	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.2178	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.61332	.:.:.:.:.:.:.:.	0/1:292:132,160:132:4736:160:5744:-412.795,0,-334.073	0/1:98:45,53:45:1597:53:1869:-122.062,0,-109.209	0/0:52:52,0:52:1857:0:0:0,-15.6536,-160.024	.:.:.:.:.:.:.:.	0/0:50:50,0:50:1796:0:0:0,-15.0515,-155.629	0/0:29:29,0:29:1036:0:0:0,-8.72987,-88.1996	0/1:37:19,18:19:680:18:644:-41.3325,0,-47.856	0/1:67:33,34:33:1188:34:1212:-84.4854,0,-85.0274	0/1:63:25,38:25:900:38:1360:-97.8823,0,-60.9737	0/0:97:97,0:97:3461:0:0:0,-29.1999,-308.082	0/1:52:26,26:26:932:26:924:-57.1805,0,-65.1696	0/0:156:156,0:156:5593:0:0:0,-46.9607,-495.518	0/0:84:84,0:84:3001:0:0:0,-25.2865,-267.365	0/0:117:117,0:117:4200:0:0:0,-35.2205,-371.651	0/1:135:61,74:61:2180:74:2652:-194.376,0,-152.804	0/1:13:5,8:5:180:8:273:-20.7567,0,-12.287	0/0:50:50,0:50:1800:0:0:0,-15.0515,-156.308	0/0:64:64,0:64:2300:0:0:0,-19.2659,-205.452	0/1:16:3,13:3:104:13:464:-29.9988,0,-4.61945	0/1:64:21,43:21:756:43:1544:-106.015,0,-45.7195	0/0:54:54,0:54:1936:0:0:0,-16.2556,-169.879	0/1:10:3,7:3:108:7:252:-20.0124,0,-7.00686	0/1:19:11,8:11:396:8:288:-19.8543,0,-29.8677	0/1:38:24,14:24:849:14:500:-27.7191,0,-62.3411	0/0:202:198,4:198:7116:4:144:0,-47.9609,-616.451	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.7363	0/0:226:226,0:226:8093:0:0:0,-68.0328,-719.204	0/1:182:76,106:76:2720:106:3796:-272.189,0,-185.259	0/1:27:23,4:23:828:4:144:-3.88298,0,-62.5108	0/0:61:60,1:60:2144:1:21:0,-16.2629,-188.593	0/1:148:80,68:80:2872:68:2413:-163.132,0,-207.979	0/0:109:108,1:108:3876:1:36:0,-29.214,-342.032	0/1:7:4,3:4:144:3:108:-6.98204,0,-10.6125	0/0:28:28,0:28:1000:0:0:0,-8.42884,-86.9391	0/1:98:47,51:47:1684:51:1828:-130.013,0,-119.851	0/0:28:28,0:28:1000:0:0:0,-8.42884,-88.7586	0/0:39:39,0:39:1381:0:0:0,-11.7402,-120.211	0/1:25:8,17:8:284:17:612:-40.4488,0,-17.5802	0/0:74:74,0:74:2656:0:0:0,-22.2762,-229.922	0/0:181:181,0:181:6489:0:0:0,-54.4864,-577.92	0/0:50:50,0:50:1758:0:0:0,-15.0515,-152.071	0/0:58:58,0:58:2042:0:0:0,-17.4597,-177.373	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.90605	0/0:40:40,0:40:1440:0:0:0,-12.0412,-121.627	0/1:28:18,10:18:644:10:360:-19.9963,0,-47.438	0/0:166:165,1:165:5912:1:36:0,-46.6248,-521.059	0/0:107:106,1:106:3785:1:36:0,-28.6119,-330.993	0/0:69:69,0:69:2476:0:0:0,-20.7711,-219.054	0/0:79:78,1:78:2792:1:36:0,-20.4352,-243.205	0/1:173:94,79:94:3365:79:2832:-193.844,0,-246.935	0/1:25:13,12:13:468:12:432:-26.2623,0,-33.462	0/0:64:64,0:64:2300:0:0:0,-19.2659,-197.658	0/0:40:38,2:38:1353:2:72:0,-5.8735,-112.006	0/1:21:12,9:12:432:9:324:-20.2969,0,-30.8788	0/1:81:56,25:56:2008:25:896:-46.4196,0,-147.019	0/1:99:31,68:31:1116:68:2436:-181.765,0,-69.6548	0/0:126:125,1:125:4468:1:36:0,-34.3315,-391.506	0/0:118:115,3:115:4116:3:108:0,-25.917,-354.901
chr02	15294953	.	G	A	109719	PASS	AB=0.660494;ABP=437.948;AC=151;AF=0.811828;AN=186;AO=4991;CIGAR=1X;DP=5656;DPB=5656;DPRA=0;EPP=10728.2;EPPR=1421.1;GTI=3;LEN=1;MEANALT=1;MQM=59.4997;MQMR=59.4752;NS=93;NUMALT=1;ODDS=6.32254;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178620;QR=23664;RO=665;RPL=13;RPP=10728.2;RPPR=1421.1;RPR=4978;RUN=1;SAF=4991;SAP=10840.8;SAR=0;SRF=665;SRP=1447.04;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1608:-144.842,-13.5464,0	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	0/1:145:29,116:29:1025:116:4164:-330.686,0,-48.7516	1/1:142:0,142:0:0:142:5051:-454.616,-42.7463,0	0/1:22:4,18:4:144:18:640:-51.3067,0,-6.69096	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:29:12,17:12:432:17:612:-46.6273,0,-30.4913	1/1:98:0,98:0:0:98:3489:-314.086,-29.5009,0	1/1:67:1,66:1:36:66:2368:-209.7,-16.5707,0	1/1:53:0,53:0:0:53:1895:-170.638,-15.9546,0	1/1:21:0,21:0:0:21:756:-68.2972,-6.32163,0	0/1:60:26,34:26:932:34:1220:-91.9328,0,-66.1371	1/1:36:0,36:0:0:36:1292:-116.346,-10.8371,0	0/1:27:14,13:14:500:13:468:-34.3318,0,-37.2084	0/1:38:14,24:14:504:24:860:-66.2793,0,-34.259	0/1:34:18,16:18:633:16:576:-41.94,0,-47.0038	1/1:24:0,24:0:0:24:864:-78.0264,-7.22472,0	0/1:19:7,12:7:237:12:432:-33.5016,0,-15.9395	1/1:25:0,25:0:0:25:896:-80.9042,-7.52575,0	0/1:116:36,80:36:1288:80:2872:-223.517,0,-81.3041	0/1:71:25,46:25:896:46:1644:-126.852,0,-59.531	1/1:114:0,114:0:0:114:4013:-361.186,-34.3174,0	1/1:94:0,94:0:0:94:3345:-301.19,-28.2968,0	1/1:62:3,59:3:108:59:2116:-180.462,-8.58869,0	1/1:43:0,43:0:0:43:1532:-138.173,-12.9443,0	1/1:166:0,166:0:0:166:5934:-532.638,-49.971,0	1/1:200:0,200:0:0:200:7164:-644.589,-60.206,0	1/1:23:0,23:0:0:23:828:-74.8408,-6.92369,0	0/1:135:34,101:34:1192:101:3597:-283.241,0,-66.9433	0/1:81:15,66:15:540:66:2372:-189.354,0,-24.5531	0/1:33:11,22:11:396:22:788:-61.3108,0,-25.9889	1/1:6:0,6:0:0:6:212:-19.4011,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:117:55,62:55:1972:62:2220:-164.732,0,-142.475	0/1:67:18,49:18:644:49:1760:-138.459,0,-38.1216	1/1:26:1,25:1:36:25:900:-77.7227,-4.22851,0	.:.:.:.:.:.:.:.	1/1:90:0,90:0:0:90:3228:-290.63,-27.0927,0	1/1:31:0,31:0:0:31:1116:-100.748,-9.33193,0	0/1:87:23,64:23:816:64:2300:-180.959,0,-47.5721	0/1:36:18,18:18:633:18:648:-47.7022,0,-46.4017	0/1:32:16,16:16:572:16:576:-42.542,0,-42.1174	1/1:106:0,106:0:0:106:3773:-339.601,-31.9092,0	0/1:71:20,51:20:720:51:1824:-143.045,0,-43.6994	1/1:184:0,184:0:0:184:6605:-594.456,-55.3895,0	1/1:73:0,73:0:0:73:2612:-235.16,-21.9752,0	1/1:81:0,81:0:0:81:2896:-259.819,-24.3834,0	0/1:115:34,81:34:1190:81:2884:-225.067,0,-72.7245	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:88:0,88:0:0:88:3149:-283.518,-26.4906,0	1/1:23:0,23:0:0:23:828:-74.7879,-6.92369,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:74:28,46:28:1008:46:1648:-126.164,0,-68.7601	1/1:35:0,35:0:0:35:1260:-112.927,-10.5361,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:44:15,29:15:521:29:1036:-80.1963,0,-33.9147	1/1:83:0,83:0:0:83:2984:-268.785,-24.9855,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:146:0,146:0:0:146:5218:-469.585,-43.9504,0	0/1:92:24,68:24:856:68:2413:-189.731,0,-49.554	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:61:0,61:0:0:61:2192:-197.489,-18.3628,0	0/1:48:20,28:20:705:28:1004:-76.2264,0,-49.2671	1/1:126:0,126:0:0:126:4492:-403.949,-37.9298,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:15:0,15:0:0:15:540:-48.8802,-4.51545,0	0/1:37:14,23:14:496:23:828:-63.5936,0,-33.8348	1/1:14:0,14:0:0:14:492:-44.6023,-4.21442,0	1/1:104:0,104:0:0:104:3720:-334.99,-31.3071,0	0/1:48:15,33:15:525:33:1180:-92.0586,0,-33.1251	1/1:77:0,77:0:0:77:2756:-248.107,-23.1793,0	1/1:159:0,159:0:0:159:5708:-513.656,-47.8638,0	1/1:88:0,88:0:0:88:3164:-284.812,-26.4906,0	1/1:89:0,89:0:0:89:3169:-285.263,-26.7917,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:89:0,89:0:0:89:3184:-286.728,-26.7917,0	0/1:72:16,56:16:563:56:2012:-159.567,0,-29.3174	1/1:226:0,226:0:0:226:8107:-729.274,-68.0328,0	1/1:54:0,54:0:0:54:1925:-173.413,-16.2556,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:18:0,18:0:0:18:648:-58.5956,-5.41854,0	0/1:53:22,31:22:788:31:1116:-84.7971,0,-55.234	0/1:13:7,6:7:248:6:216:-15.8201,0,-18.7508	1/1:43:0,43:0:0:43:1536:-138.53,-12.9443,0	1/1:32:0,32:0:0:32:1152:-103.987,-9.63296,0	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:47:27,20:27:960:20:716:-50.5631,0,-72.4522	0/1:39:27,12:27:972:12:432:-27.481,0,-76.0577	1/1:102:0,102:0:0:102:3660:-329.305,-30.7051,0	1/1:72:0,72:0:0:72:2580:-232.33,-21.6742,0
chr02	15294974	.	A	G	9034.22	PASS	AB=0.365479;ABP=289.86;AC=35;AF=0.188172;AN=186;AO=678;CIGAR=1X;DP=5156;DPB=5156;DPRA=1.01623;EPP=1475.27;EPPR=9722.52;GTI=3;LEN=1;MEANALT=1.025;MQM=59.2198;MQMR=59.569;NS=93;NUMALT=1;ODDS=3.20836;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23960;QR=157769;RO=4476;RPL=678;RPP=1475.27;RPPR=9722.52;RPR=0;RUN=1;SAF=678;SAP=1475.27;SAR=0;SRF=4476;SRP=9722.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1371:0:0:0,-11.7402,-123.552	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:136:104,32:104:3669:32:1134:-61.2619,0,-288.617	0/0:125:125,0:125:4394:0:0:0,-37.6287,-395.479	0/1:22:18,4:18:648:4:144:-6.69096,0,-52.0292	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:29:17,12:17:604:12:428:-30.1289,0,-45.9044	0/0:86:86,0:86:3012:0:0:0,-25.8886,-271.135	0/0:65:64,1:64:2263:1:36:0,-15.9687,-200.223	0/0:48:48,0:48:1700:0:0:0,-14.4494,-153.091	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.7368	0/1:59:33,26:33:1164:26:902:-63.7321,0,-87.2267	0/0:33:32,1:32:1129:1:36:0,-6.58784,-97.7816	0/1:28:13,15:13:464:15:527:-39.3238,0,-33.6687	0/1:38:23,15:23:805:15:531:-36.6264,0,-61.325	0/1:34:16,18:16:568:18:627:-46.4631,0,-41.2168	0/0:20:20,0:20:700:0:0:0,-6.0206,-63.3001	0/1:19:12,7:12:423:7:244:-16.5799,0,-32.6855	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3522	0/1:110:74,36:74:2592:36:1287:-83.0195,0,-200.248	0/1:68:44,24:44:1548:24:860:-57.1956,0,-119.118	0/0:102:102,0:102:3591:0:0:0,-30.7051,-323.346	0/0:80:80,0:80:2804:0:0:0,-24.0824,-252.545	0/0:53:50,3:50:1775:3:108:0,-5.87942,-149.786	0/0:38:38,0:38:1323:0:0:0,-11.4391,-119.369	0/0:153:153,0:153:5375:0:0:0,-46.0576,-481.674	0/0:177:177,0:177:6283:0:0:0,-53.2823,-565.343	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1608	0/1:123:90,33:90:3172:33:1162:-67.8586,0,-248.682	0/1:75:61,14:61:2156:14:495:-22.3058,0,-171.731	0/1:29:18,11:18:631:11:392:-26.8303,0,-48.3858	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:112:56,55:56:1962:55:1904:-137.806,0,-143.084	0/1:64:45,19:45:1585:19:680:-42.2632,0,-123.649	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	.:.:.:.:.:.:.:.	0/0:74:74,0:74:2613:0:0:0,-22.2762,-235.362	0/0:27:27,0:27:952:0:0:0,-8.12781,-85.9918	0/1:79:56,23:56:1961:23:807:-49.1678,0,-152.903	0/1:33:17,16:17:600:16:568:-41.4616,0,-44.2826	0/1:29:13,16:13:460:16:568:-42.659,0,-33.0055	0/0:93:93,0:93:3280:0:0:0,-27.9958,-295.253	0/1:65:44,21:44:1535:21:752:-48.3268,0,-118.874	0/0:161:161,0:161:5684:0:0:0,-48.4658,-511.623	0/0:66:66,0:66:2334:0:0:0,-19.868,-210.151	0/0:69:69,0:69:2445:0:0:0,-20.7711,-220.08	0/1:106:71,35:71:2502:35:1240:-79.883,0,-193.412	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/0:85:85,0:85:3006:0:0:0,-25.5875,-270.637	0/0:20:20,0:20:704:0:0:0,-6.0206,-63.6845	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:74:43,31:43:1521:31:1099:-76.831,0,-114.849	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:43:26,17:26:920:17:604:-41.69,0,-70.0604	0/0:76:76,0:76:2652:0:0:0,-22.8783,-238.923	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:129:129,0:129:4562:0:0:0,-38.8329,-410.56	0/1:78:55,23:55:1940:23:824:-51.003,0,-151.396	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:56:55,1:55:1933:1:36:0,-13.3216,-170.709	0/1:42:23,19:23:797:19:669:-47.8344,0,-59.4026	0/0:108:108,0:108:3776:0:0:0,-32.5112,-339.941	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.2798	0/1:37:23,14:23:816:14:500:-34.1947,0,-62.5112	0/0:11:11,0:11:380:0:0:0,-3.31133,-34.4755	0/0:99:99,0:99:3505:0:0:0,-29.802,-315.651	0/1:45:30,15:30:1052:15:531:-34.5688,0,-81.4441	0/0:73:72,0:72:2556:0:0:0,-21.6742,-229.885	0/0:144:144,0:144:5123:0:0:0,-43.3483,-461.097	0/0:71:71,0:71:2462:0:0:0,-21.3731,-221.722	0/0:79:79,0:79:2787:0:0:0,-23.7814,-250.954	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/0:82:82,0:82:2891:0:0:0,-24.6845,-260.373	0/1:60:45,15:45:1599:15:531:-30.0038,0,-126.026	0/0:206:201,5:201:7123:5:176:0,-46.0797,-625.034	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.443	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.2729	0/1:51:29,22:29:1003:22:788:-55.836,0,-75.227	0/1:13:6,7:6:216:7:244:-18.386,0,-15.8201	0/0:41:41,0:41:1442:0:0:0,-12.3422,-130.071	0/0:30:30,0:30:1053:0:0:0,-9.0309,-95.0752	0/1:20:12,8:12:411:8:288:-20.2468,0,-31.2973	0/1:43:17,26:17:600:26:891:-67.4392,0,-41.3286	0/1:42:12,30:12:424:30:1059:-82.9487,0,-25.8532	0/0:93:93,0:93:3274:0:0:0,-27.9958,-294.643	0/0:67:67,0:67:2337:0:0:0,-20.169,-210.473
chr02	15354601	.	C	T	13068.3	PASS	AB=0.484731;ABP=7.18799;AC=37;AF=0.196809;AN=188;AO=1008;CIGAR=1X;DP=5782;DPB=5782;DPRA=1.08389;EPP=2055.09;EPPR=9529.37;GTI=1;LEN=1;MEANALT=1;MQM=33.2639;MQMR=59.2823;NS=94;NUMALT=1;ODDS=1.44959;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36213;QR=170363;RO=4771;RPL=16;RPP=2055.09;RPPR=9529.37;RPR=992;RUN=1;SAF=1008;SAP=2191.85;SAR=0;SRF=4771;SRP=10363.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.5839	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.773	0/1:70:30,40:30:1080:40:1440:-91.6912,0,-75.9762	0/0:177:177,0:177:6313:0:0:0,-53.2823,-567.992	0/1:77:21,56:21:752:56:2012:-129.475,0,-44.8269	0/1:49:29,20:29:1040:20:716:-41.6268,0,-79.0802	0/1:89:41,48:41:1463:48:1713:-107.793,0,-105.174	0/0:80:80,0:80:2793:0:0:0,-24.0824,-251.568	0/0:57:57,0:57:2024:0:0:0,-17.1587,-182.389	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.433	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:22:13,9:13:453:9:324:-19.0495,0,-34.477	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.715	0/1:23:13,10:13:468:10:360:-20.8726,0,-35.536	0/1:24:14,10:14:500:10:360:-21.3719,0,-38.1115	0/1:17:8,9:8:284:9:324:-19.9297,0,-20.7858	0/0:14:13,1:13:468:1:36:0,-0.655803,-38.901	0/1:18:11,7:11:396:7:252:-14.6848,0,-30.5642	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9219	0/1:172:89,83:89:3175:83:2984:-186,0,-233.827	0/1:68:38,30:38:1360:30:1080:-62.4328,0,-102.116	0/0:165:165,0:165:5893:0:0:0,-49.6699,-530.405	0/0:76:76,0:76:2720:0:0:0,-22.8783,-244.964	0/0:74:72,2:72:2588:2:72:0,-16.4726,-227.224	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.27	0/0:286:285,1:285:10189:1:36:0,-82.7956,-913.368	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.205	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6935	0/1:201:108,93:108:3842:93:3337:-211.984,0,-285.36	0/1:94:48,46:48:1724:46:1656:-97.9987,0,-126.473	0/1:124:62,62:62:2194:62:2232:-140.473,0,-160.128	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:8,0:8:288:0:0:0,-2.40824,-25.8213	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:5,3:5:180:3:108:-6.33795,0,-13.95	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:65:39,26:39:1396:26:936:-57.7391,0,-106.33	0/0:171:169,2:169:6051:2:72:0,-45.6725,-537.857	0/0:15:15,0:15:514:0:0:0,-4.51545,-46.5372	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:99:99,0:99:3499:0:0:0,-29.802,-314.444	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.455	0/1:118:58,60:58:2084:60:2148:-128.584,0,-152.283	0/1:22:14,8:14:496:8:288:-16.5256,0,-38.3231	0/1:15:8,7:8:288:7:252:-15.8853,0,-21.6447	0/0:99:99,0:99:3499:0:0:0,-29.802,-314.895	0/1:83:42,41:42:1504:41:1476:-88.8279,0,-110.633	0/0:83:83,0:83:2955:0:0:0,-24.9855,-265.677	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.425	0/0:144:144,0:144:5155:0:0:0,-43.3483,-463.796	0/1:12:8,4:8:288:4:144:-8.12266,0,-22.655	0/0:104:104,0:104:3692:0:0:0,-31.3071,-331.911	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.048	0/1:5:2,3:2:72:3:108:-6.27312,0,-5.33157	0/1:57:24,33:24:860:33:1184:-72.8946,0,-60.5075	0/0:40:40,0:40:1418:0:0:0,-12.0412,-127.853	0/1:3:1,2:1:36:2:72:-5.36506,0,-2.69518	0/1:8:2,6:2:72:6:216:-15.7364,0,-4.42848	0/1:69:39,30:39:1400:30:1076:-59.459,0,-105.524	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.724	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:119:117,0:117:4165:0:0:0,-35.2205,-373.188	0/1:126:71,55:71:2527:55:1980:-118.59,0,-189.324	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.763	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.747	0/1:125:57,68:57:2027:68:2435:-155.489,0,-144.986	0/0:91:89,2:89:3196:2:72:0,-21.3372,-281.618	0/1:6:4,2:4:144:2:72:-3.99744,0,-11.4384	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.152	0/1:53:27,26:27:963:26:936:-60.9034,0,-70.9952	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.6994	0/0:122:122,0:122:4371:0:0:0,-36.7257,-392.112	0/1:11:6,5:6:216:5:176:-10.8942,0,-16.4792	0/0:81:81,0:81:2899:0:0:0,-24.3834,-260.708	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.169	0/0:117:117,0:117:4188:0:0:0,-35.2205,-377.021	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.374	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.261	0/1:104:59,45:59:2103:45:1620:-93.5124,0,-158.053	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.767	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.171	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3388	0/0:22:22,0:22:774:0:0:0,-6.62266,-69.9765	0/1:46:26,20:26:927:20:720:-43.6077,0,-69.8147	0/1:25:16,9:16:576:9:324:-18.0881,0,-44.6133	0/0:36:36,0:36:1276:0:0:0,-10.8371,-115.071	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5129	0/1:11:6,5:6:216:5:180:-10.8031,0,-16.4336	0/1:25:16,9:16:576:9:324:-17.5215,0,-44.6041	0/1:18:8,10:8:288:10:360:-22.7619,0,-20.8426	0/0:109:109,0:109:3892:0:0:0,-32.8123,-350.07	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1182
chr02	15383898	.	T	G	25950.7	PASS	AB=0.477957;ABP=16.8915;AC=38;AF=0.202128;AN=188;AO=1584;CIGAR=1X;DP=9241;DPB=9241;DPRA=1.03064;EPP=3442.62;EPPR=16608.3;GTI=2;LEN=1;MEANALT=1.02381;MQM=59.94;MQMR=59.9945;NS=94;NUMALT=1;ODDS=1.69593;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56557;QR=274762;RO=7655;RPL=0;RPP=3442.62;RPPR=16608.3;RPR=1584;RUN=1;SAF=0;SAP=3442.62;SAR=1584;SRF=0;SRP=16625.6;SRR=7655;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/1:137:71,66:71:2552:66:2349:-170.426,0,-188.689	0/0:401:400,1:400:14316:1:36:0,-117.115,-1284.59	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:82:44,38:44:1584:38:1356:-97.656,0,-118.167	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.292	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/1:113:59,54:59:2124:54:1912:-138.149,0,-157.412	0/0:104:104,0:104:3744:0:0:0,-31.3071,-337.158	0/1:100:41,59:41:1476:59:2095:-158.716,0,-103.033	0/1:98:50,47:50:1800:47:1684:-122.287,0,-132.722	0/1:85:49,36:49:1764:36:1296:-91.3564,0,-133.456	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:58:31,27:31:1112:27:959:-69.1657,0,-82.9316	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:115:67,48:67:2403:48:1715:-120.016,0,-181.907	0/1:236:120,116:120:4293:116:4135:-301.239,0,-315.502	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016	0/0:64:62,2:62:2217:2:72:0,-12.4292,-192.956	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:265:265,0:265:9528:0:0:0,-79.7729,-857.471	0/0:264:264,0:264:9444:0:0:0,-79.4719,-849.919	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:287:164,123:164:5873:123:4401:-309.865,0,-442.283	0/1:89:58,31:58:2069:31:1112:-73.5997,0,-159.687	0/1:126:65,61:65:2332:61:2196:-159.975,0,-172.21	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:264:264,0:264:9492:0:0:0,-79.4719,-854.176	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:45:30,15:30:1080:15:536:-35.0285,0,-83.9669	0/1:82:46,36:46:1652:36:1292:-91.8993,0,-124.284	0/1:101:45,56:45:1620:56:1990:-148.969,0,-115.686	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:44:23,21:23:828:21:756:-55.1137,0,-61.5988	0/0:150:150,0:150:5384:0:0:0,-45.1545,-484.69	0/0:86:85,1:85:3056:1:36:0,-22.2903,-271.67	0/0:202:200,2:200:7200:2:72:0,-53.9713,-641.213	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:116:116,0:116:4157:0:0:0,-34.9195,-374.311	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:188:94,94:94:3361:94:3358:-245.842,0,-246.111	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:85:49,36:49:1760:36:1277:-89.642,0,-133.096	0/0:135:133,2:133:4788:2:72:0,-33.8023,-424.237	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:284:284,0:284:10208:0:0:0,-85.4925,-918.642	0/1:173:108,65:108:3880:65:2321:-157.07,0,-297.315	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:191:91,100:91:3261:100:3582:-265.087,0,-236.212	0/0:184:184,0:184:6593:0:0:0,-55.3895,-593.448	0/1:67:31,36:31:1112:36:1296:-96.7749,0,-80.2223	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.444	0/1:46:19,27:19:669:27:960:-72.8689,0,-46.6866	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/1:149:72,77:72:2588:77:2737:-201.715,0,-188.315	0/0:271:271,0:271:9740:0:0:0,-81.5791,-876.541	0/0:256:256,0:256:9196:0:0:0,-77.0637,-827.606	0/0:18:17,1:17:612:1:36:0,-1.82026,-51.8152	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/1:106:53,53:53:1904:53:1889:-138.369,0,-139.599	0/0:154:154,0:154:5521:0:0:0,-46.3586,-497.013	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:133:132,0:132:4752:0:0:0,-39.736,-427.475	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/1:145:76,69:76:2736:69:2476:-179.443,0,-202.832	0/1:29:15,14:15:540:14:500:-36.6063,0,-40.2067	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/1:61:32,29:32:1152:29:1024:-74.1077,0,-85.6273	0/1:101:51,50:51:1828:50:1792:-131.158,0,-134.397	0/1:101:33,68:33:1165:68:2409:-186.659,0,-74.751	0/0:292:292,0:292:10455:0:0:0,-87.9008,-940.862	0/0:146:146,0:146:5252:0:0:0,-43.9504,-472.814
chr02	15383906	.	G	A	25967.2	PASS	AB=0.481024;ABP=13.1467;AC=38;AF=0.202128;AN=188;AO=1571;CIGAR=1X;DP=9120;DPB=9120;DPRA=1.03017;EPP=3405.71;EPPR=16332.5;GTI=2;LEN=1;MEANALT=1.02381;MQM=59.9453;MQMR=59.9974;NS=94;NUMALT=1;ODDS=1.36403;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56207;QR=269068;RO=7548;RPL=1;RPP=3405.71;RPPR=16332.5;RPR=1570;RUN=1;SAF=0;SAP=3414.39;SAR=1571;SRF=0;SRP=16393.3;SRR=7548;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:104:104,0:104:3694:0:0:0,-31.3071,-332.664	0/1:133:68,65:68:2436:65:2319:-168.933,0,-179.458	0/0:398:397,1:397:14142:1:36:0,-116.212,-1268.95	0/1:19:12,7:12:428:7:251:-17.2183,0,-33.1392	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:82:43,39:43:1535:39:1404:-101.975,0,-113.758	0/0:95:95,0:95:3383:0:0:0,-28.5978,-304.685	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.948	0/0:56:56,0:56:1985:0:0:0,-16.8577,-178.923	0/0:71:71,0:71:2526:0:0:0,-21.3731,-227.591	0/1:114:60,54:60:2135:54:1921:-138.658,0,-158.1	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/1:99:40,59:40:1431:59:2086:-158.205,0,-99.2849	0/1:97:51,46:51:1832:46:1643:-118.958,0,-135.961	0/1:84:50,34:50:1800:34:1224:-85.1805,0,-136.996	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/1:58:31,27:31:1116:27:972:-70.3382,0,-83.292	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:115:66,49:66:2363:49:1760:-124.065,0,-178.309	0/1:231:117,114:117:4192:114:4061:-296.097,0,-307.923	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:118:118,0:118:4200:0:0:0,-35.5215,-378.181	0/0:62:60,2:60:2119:2:72:0,-11.8271,-184.139	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:264:264,0:264:9379:0:0:0,-79.4719,-844.078	0/0:259:259,0:259:9221:0:0:0,-77.9668,-829.863	0/0:42:42,0:42:1494:0:0:0,-12.6433,-134.753	0/1:277:157,120:157:5531:120:4304:-304.151,0,-414.535	0/1:85:54,31:54:1932:31:1112:-74.8038,0,-148.569	0/1:123:63,60:63:2256:60:2160:-157.64,0,-166.276	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:8,4:8:279:4:144:-9.70126,0,-21.8352	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:260:260,0:260:9243:0:0:0,-78.2678,-831.787	0/0:88:88,0:88:3124:0:0:0,-26.4906,-281.386	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:110:110,0:110:3932:0:0:0,-33.1133,-354.073	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/1:43:28,15:28:1008:15:540:-35.9922,0,-78.0921	0/1:81:45,36:45:1607:36:1292:-92.2003,0,-120.536	0/1:99:43,56:43:1524:56:2012:-151.551,0,-107.648	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:41:22,19:22:788:19:680:-49.1787,0,-58.9026	0/0:147:147,0:147:5249:0:0:0,-44.2514,-472.546	0/0:84:83,1:83:2953:1:36:0,-21.6882,-262.404	0/0:200:198,2:198:7068:2:72:0,-53.3693,-629.344	0/0:109:109,0:109:3885:0:0:0,-32.8123,-349.844	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:189:92,97:92:3296:97:3481:-256.604,0,-239.964	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:81:48,33:48:1712:33:1187:-82.7552,0,-129.982	0/0:136:134,2:134:4812:2:72:0,-34.1034,-426.397	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:278:278,0:278:9909:0:0:0,-83.6863,-891.753	0/1:172:107,65:107:3824:65:2336:-158.722,0,-292.58	0/0:73:73,0:73:2581:0:0:0,-21.9752,-232.536	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/1:186:89,97:89:3156:97:3479:-257.327,0,-228.273	0/0:179:179,0:179:6366:0:0:0,-53.8844,-573.032	0/1:68:32,36:32:1135:36:1292:-96.1137,0,-81.988	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.846	0/1:49:22,27:22:768:27:959:-71.8749,0,-54.6872	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.337	0/1:150:72,78:72:2562:78:2768:-204.205,0,-185.675	0/0:267:267,0:267:9450:0:0:0,-80.375,-850.467	0/0:249:249,0:249:8928:0:0:0,-74.9565,-803.5	0/0:18:17,1:17:604:1:36:0,-1.82026,-51.0923	0/0:96:96,0:96:3397:0:0:0,-28.8989,-305.944	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:111:111,0:111:3958:0:0:0,-33.4143,-356.411	0/1:105:51,53:51:1823:53:1893:-139.088,0,-132.793	0/0:154:154,0:154:5520:0:0:0,-46.3586,-496.925	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:131:131,0:131:4703:0:0:0,-39.4349,-423.428	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/1:141:74,67:74:2651:67:2392:-173.092,0,-196.39	0/1:27:13,14:13:468:14:496:-36.8464,0,-34.3318	0/0:89:89,0:89:3177:0:0:0,-26.7917,-286.153	0/0:93:93,0:93:3314:0:0:0,-27.9958,-298.478	0/1:61:32,29:32:1136:29:1044:-75.912,0,-84.1861	0/1:99:49,50:49:1706:50:1788:-131.401,0,-124.019	0/1:102:33,69:33:1171:69:2455:-190.497,0,-74.9916	0/0:289:289,0:289:10272:0:0:0,-86.9977,-924.409	0/0:148:148,0:148:5298:0:0:0,-44.5524,-476.954
chr02	15702152	.	CT	GT	177724	PASS	AB=0.509711;ABP=5.96263;AC=152;AF=0.808511;AN=188;AO=8207;CIGAR=1X1M;DP=9996;DPB=9996;DPRA=0;EPP=17824.3;EPPR=3842.17;GTI=2;LEN=1;MEANALT=1.17021;MQM=59.9893;MQMR=59.9955;NS=94;NUMALT=1;ODDS=0.528204;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=292573;QR=62207;RO=1768;RPL=0;RPP=17824.3;RPPR=3842.17;RPR=8207;RUN=1;SAF=8207;SAP=17824.3;SAR=0;SRF=1768;SRP=3842.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,37:0:0:37:1305:-117.39,-11.1381,0	1/1:186:1,185:1:36:185:6598:-590.301,-52.3933,0	0/1:248:130,118:130:4605:118:4224:-305.683,0,-339.959	1/1:290:0,290:0:0:290:10298:-926.747,-87.2987,0	0/1:74:28,44:28:1008:44:1576:-120.203,0,-69.1049	0/1:80:30,50:30:1063:50:1796:-137.84,0,-71.8993	0/1:173:73,100:73:2597:100:3544:-267.09,0,-181.902	1/1:164:0,164:0:0:164:5854:-526.969,-49.3689,0	1/1:82:0,82:0:0:82:2883:-259.704,-24.6845,0	1/1:132:0,132:0:0:132:4693:-422.529,-39.736,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:57:30,27:30:1065:27:960:-69.5576,0,-79.0033	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	0/1:44:26,18:26:932:18:648:-45.4066,0,-70.9538	0/1:61:35,25:35:1231:25:900:-62.8994,0,-92.6707	0/1:46:23,23:23:826:23:824:-60.6359,0,-60.8164	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:40:24,16:24:857:16:572:-39.7722,0,-65.4101	1/1:33:0,33:0:0:33:1177:-106.237,-9.93399,0	0/1:299:141,157:141:4908:157:5598:-413.983,0,-351.916	0/1:197:97,100:97:3434:100:3548:-260.117,0,-249.973	1/1:103:0,102:0:0:102:3626:-326.184,-30.7051,0	1/1:112:2,110:2:72:110:3930:-347.056,-26.8786,0	1/1:140:3,135:3:97:135:4824:-425.273,-32.8044,0	1/1:62:0,62:0:0:62:2212:-199.344,-18.6639,0	1/1:360:0,359:0:0:359:12758:-1147.79,-108.07,0	1/1:239:0,239:0:0:239:8505:-765.448,-71.9462,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:314:155,156:155:5464:156:5579:-408.247,0,-397.91	0/1:84:51,32:51:1764:32:1119:-75.7753,0,-133.8	0/1:126:62,64:62:2172:64:2266:-166.263,0,-157.815	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:195:0,195:0:0:195:6965:-626.915,-58.7009,0	1/1:160:0,160:0:0:160:5711:-514.109,-48.1648,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:124:1,123:1:36:123:4387:-391.404,-33.7294,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:176:83,93:83:2901:93:3286:-242.978,0,-208.336	0/1:60:31,29:31:1105:29:1040:-75.8526,0,-81.6991	0/1:45:20,25:20:701:25:896:-67.414,0,-49.8667	1/1:127:0,126:0:0:126:4467:-401.839,-37.9298,0	0/1:163:84,79:84:2955:79:2817:-204.701,0,-217.114	1/1:156:1,155:1:23:155:5489:-491.838,-44.6608,0	1/1:132:0,132:0:0:132:4684:-421.723,-39.736,0	1/1:201:0,201:0:0:201:7166:-644.997,-60.507,0	1/1:144:0,144:0:0:144:5130:-461.841,-43.3483,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:184:0,184:0:0:184:6589:-593.088,-55.3895,0	1/1:31:0,31:0:0:31:1083:-97.7766,-9.33193,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:187:82,105:82:2839:105:3709:-277.719,0,-199.454	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6891	0/1:75:29,46:29:1020:46:1644:-125.671,0,-69.5327	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:277:0,275:0:0:275:9840:-885.182,-82.7833,0	0/1:229:101,128:101:3557:128:4564:-341.989,0,-251.401	1/1:64:1,62:1:36:62:2224:-196.879,-15.6715,0	1/1:150:0,150:0:0:150:5345:-481.183,-45.1545,0	0/1:220:113,107:113:3987:107:3783:-274.441,0,-292.795	1/1:125:0,125:0:0:125:4465:-402.019,-37.6288,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:56:0,56:0:0:56:2000:-180.273,-16.8577,0	0/1:77:32,45:32:1119:45:1612:-122.191,0,-77.8358	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:51:0,51:0:0:51:1801:-162.37,-15.3525,0	0/1:81:39,42:39:1349:42:1512:-111.991,0,-97.3205	1/1:118:0,118:0:0:118:4177:-376.111,-35.5215,0	1/1:248:0,248:0:0:248:8879:-799.094,-74.6554,0	1/1:123:0,123:0:0:123:4399:-396.083,-37.0267,0	1/1:163:0,163:0:0:163:5844:-526.071,-49.0679,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:189:0,189:0:0:189:6755:-608.022,-56.8947,0	0/1:139:77,61:77:2675:61:2184:-155.003,0,-199.17	1/1:335:1,333:1:36:333:11894:-1066.78,-97.2507,0	1/1:110:0,110:0:0:110:3917:-352.723,-33.1133,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:118:62,56:62:2197:56:1995:-144.302,0,-162.473	0/1:37:21,16:21:750:16:568:-40.3138,0,-56.688	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:81:0,81:0:0:81:2881:-259.526,-24.3834,0	0/1:17:10,7:10:349:7:252:-17.9114,0,-26.6272	0/1:42:20,22:20:709:22:775:-57.4279,0,-51.4924	0/1:50:30,20:30:1052:20:720:-50.0773,0,-79.9376	1/1:196:0,196:0:0:196:6966:-627.008,-59.0019,0	1/1:90:0,90:0:0:90:3205:-288.671,-27.0927,0
chr02	15752547	.	CT	TT,TG	248851	PASS	AB=0.528027,0.470694;ABP=29.6666,32.1565;AC=150,38;AF=0.797872,0.202128;AN=188;AO=9482,1852;CIGAR=1X1M,2X;DP=11351;DPB=11351;DPRA=123.359,0.89071;EPP=20575.5,4024.58;EPPR=16.0391;GTI=3;LEN=1,2;MEANALT=1.52174,2.12821;MQM=59.5345,53.2959;MQMR=55.6667;NS=94;NUMALT=2;ODDS=3.5531;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=339079,65452;QR=210;RO=6;RPL=0,0;RPP=20592.9,4024.58;RPPR=16.0391;RPR=9482,1852;RUN=1,1;SAF=9480,1852;SAP=20575.5,4024.58;SAR=2,0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:77:2,75,0:2:68:75,0:2684,0:-235.326,-16.7216,0,-235.929,-22.5773,-241.444	1/1:231:0,231,0:0:0:231,0:8267,0:-743.88,-69.5379,0,-743.88,-69.5379,-743.88	1/1:123:0,123,0:0:0:123,0:4401,0:-396.132,-37.0267,0,-396.132,-37.0267,-396.132	1/1:267:0,267,0:0:0:267,0:9550,0:-859.008,-80.375,0,-859.008,-80.375,-859.008	1/2:115:0,52,63:0:0:52,63:1856,2251:-334.567,-183.266,-167.612,-151.658,0,-132.693	1/2:48:0,20,27:0:0:20,27:716,952:-135.381,-76.9885,-70.9679,-58.3882,0,-50.2604	1/2:162:0,102,60:0:0:102,60:3668,2143:-474.059,-174.802,-144.097,-299.615,0,-281.553	1/1:250:0,250,0:0:0:250,0:8934,0:-803.856,-75.2575,0,-803.856,-75.2575,-803.856	1/1:159:0,159,0:0:0:159,0:5664,0:-509.808,-47.8638,0,-509.808,-47.8638,-509.808	1/1:125:0,125,0:0:0:125,0:4467,0:-402.118,-37.6288,0,-402.118,-37.6288,-402.118	1/1:60:0,60,0:0:0:60,0:2160,0:-194.657,-18.0618,0,-194.657,-18.0618,-194.657	1/2:96:0,45,50:0:0:45,50:1620,1781:-276.672,-144.493,-130.947,-132.283,0,-117.232	1/1:102:1,100,0:1:36:100,0:3579,0:-318.318,-27.1656,0,-318.619,-30.103,-321.556	1/2:98:0,38,60:0:0:38,60:1368,2108:-282.915,-171.298,-159.859,-111.972,0,-93.9107	1/2:87:0,43,44:0:0:43,44:1544,1571:-254.04,-128.092,-115.147,-126.305,0,-113.06	1/2:66:0,32,34:0:0:32,34:1152,1195:-191.215,-97.2132,-87.5803,-94.3572,0,-84.1222	1/1:105:0,105,0:0:0:105,0:3767,0:-339.169,-31.6082,0,-339.169,-31.6082,-339.169	1/2:78:0,40,38:0:0:40,38:1427,1357:-226.042,-109.719,-97.678,-116.677,0,-105.238	1/1:47:0,47,0:0:0:47,0:1680,0:-151.426,-14.1484,0,-151.426,-14.1484,-151.426	1/2:302:0,159,143:0:0:159,143:5700,5042:-872.464,-407.667,-359.803,-465.151,0,-422.104	1/2:232:0,124,108:0:0:124,108:4429,3794:-668.451,-307.672,-270.345,-361.131,0,-328.62	1/1:86:0,86,0:0:0:86,0:3068,0:-276.343,-25.8886,0,-276.343,-25.8886,-276.343	1/1:112:0,112,0:0:0:112,0:3964,0:-356.81,-33.7154,0,-356.81,-33.7154,-356.81	1/1:201:0,192,8:0:0:192,8:6857,288:-616.752,-57.7978,0,-593.313,-34.3592,-590.905	1/1:115:0,115,0:0:0:115,0:4115,0:-370.525,-34.6185,0,-370.525,-34.6185,-370.525	1/1:494:1,493,0:1:34:493,0:17610,0:-1580.48,-145.31,0,-1580.78,-148.408,-1583.54	1/1:275:0,275,0:0:0:275,0:9831,0:-884.642,-82.7833,0,-884.642,-82.7833,-884.642	1/1:53:0,53,0:0:0:53,0:1900,0:-171.12,-15.9546,0,-171.12,-15.9546,-171.12	1/2:371:0,196,175:0:0:196,175:7000,6157:-1070.14,-499.687,-440.685,-570.805,0,-518.125	1/2:113:0,65,48:0:0:65,48:2308,1680:-323.281,-135.238,-115.671,-188.393,0,-173.944	1/2:156:0,91,65:0:0:91,65:3252,2318:-453.939,-188.794,-161.401,-265.501,0,-245.934	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	2/2:1:0,0,1:0:0:0,1:0,34:-3.39317,-3.39317,-3.39317,-0.30103,-0.30103,0	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:209:0,209,0:0:0:209,0:7483,0:-673.427,-62.9153,0,-673.427,-62.9153,-673.427	1/1:210:0,209,0:0:0:209,0:7442,0:-669.295,-62.9153,0,-669.295,-62.9153,-669.295	1/1:57:0,57,0:0:0:57,0:2039,0:-183.765,-17.1587,0,-183.765,-17.1587,-183.765	2/2:1:0,0,1:0:0:0,1:0,36:-3.59317,-3.59317,-3.59317,-0.30103,-0.30103,0	1/1:185:0,185,0:0:0:185,0:6647,0:-598.171,-55.6906,0,-598.171,-55.6906,-598.171	1/1:40:0,40,0:0:0:40,0:1432,0:-129.171,-12.0412,0,-129.171,-12.0412,-129.171	1/2:203:0,112,91:0:0:112,91:4020,3194:-586.653,-258.968,-225.252,-328.038,0,-300.645	1/2:105:0,55,50:0:0:55,50:1971,1784:-306.313,-145.565,-129.008,-161.105,0,-146.053	1/2:75:1,44,30:1:36:44,30:1563,1065:-210.636,-83.5836,-72.905,-124.82,0,-118.357	1/1:107:0,107,0:0:0:107,0:3820,0:-343.983,-32.2102,0,-343.983,-32.2102,-343.983	1/2:79:0,32,46:0:0:32,46:1148,1640:-226.146,-132.515,-122.882,-93.7041,0,-79.8568	1/1:192:0,192,0:0:0:192,0:6841,0:-615.458,-57.7978,0,-615.458,-57.7978,-615.458	1/1:101:0,101,0:0:0:101,0:3624,0:-326.278,-30.404,0,-326.278,-30.404,-326.278	1/1:285:0,285,0:0:0:285,0:10207,0:-918.343,-85.7936,0,-918.343,-85.7936,-918.343	1/1:219:0,219,0:0:0:219,0:7821,0:-703.44,-65.9256,0,-703.44,-65.9256,-703.44	1/2:11:0,4,7:0:0:4,7:140,252:-32.2922,-20.9051,-19.701,-11.7405,0,-9.63325	1/1:163:0,163,0:0:0:163,0:5840,0:-525.631,-49.0679,0,-525.631,-49.0679,-525.631	1/1:54:0,54,0:0:0:54,0:1924,0:-173.401,-16.2556,0,-173.401,-16.2556,-173.401	1/2:14:0,4,10:0:0:4,10:144,360:-41.4016,-29.6517,-28.4476,-12.1095,0,-9.0992	1/2:113:0,54,59:0:0:54,59:1932,2069:-324.515,-167.238,-150.982,-157.629,0,-139.869	1/1:77:0,77,0:0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chr02	15911951	.	TAAA	TAAG,CAAG	207225	PASS	AB=0.516045,0.480026;ABP=9.83899,13.5932;AC=154,34;AF=0.819149,0.180851;AN=188;AO=7935,1474;CIGAR=3M1X,1X2M1X;DP=9437;DPB=9436.75;DPRA=0,0.970955;EPP=17225,3203.76;EPPR=9.52472;GTI=1;LEN=1,4;MEANALT=1.65957,2.30769;MQM=59.6044,53.5366;MQMR=60;NS=94;NUMALT=2;ODDS=4.84628;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=283967,51863;QR=96;RO=3;RPL=7934,1474;RPP=17225,3203.76;RPPR=9.52472;RPR=1,0;RUN=1,1;SAF=7935,1474;SAP=17233.6,3203.76;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18,0:0:0:18,0:648,0:-58.6437,-5.41854,0,-58.6437,-5.41854,-58.6437	1/1:153:0,153,0:0:0:153,0:5479,0:-493.209,-46.0576,0,-493.209,-46.0576,-493.209	1/1:112:0,112,0:0:0:112,0:3982,0:-358.509,-33.7154,0,-358.509,-33.7154,-358.509	1/1:247:1,243,3:1:30:243,3:8713,107:-779.832,-70.7658,0,-771.417,-64.392,-772.912	1/2:128:0,74,54:0:0:74,54:2641,1902:-370.161,-154.916,-132.64,-215.599,0,-199.344	1/2:74:0,39,35:0:0:39,35:1404,1198:-211.783,-97.2617,-85.5215,-114.871,0,-104.335	1/2:106:0,42,64:0:0:42,64:1508,2219:-303.35,-180.335,-167.691,-123.369,0,-104.103	1/1:237:0,237,0:0:0:237,0:8451,0:-760.474,-71.3441,0,-760.474,-71.3441,-760.474	1/1:72:0,71,1:0:0:71,1:2528,36:-227.33,-21.3731,0,-224.401,-18.0849,-224.1	1/1:126:0,126,0:0:0:126,0:4498,0:-404.926,-37.9298,0,-404.926,-37.9298,-404.926	1/1:52:0,51,0:0:0:51,0:1811,0:-162.825,-15.3525,0,-162.825,-15.3525,-162.825	1/2:51:0,30,21:0:0:30,21:1080,738:-147.883,-60.1831,-51.1522,-88.0536,0,-81.732	1/1:52:0,52,0:0:0:52,0:1872,0:-168.516,-15.6536,0,-168.516,-15.6536,-168.516	1/2:55:0,26,29:0:0:26,29:932,1000:-157.004,-80.9878,-73.161,-76.3675,0,-67.6376	1/2:42:0,19,23:0:0:19,23:680,820:-122.55,-67.0976,-61.3781,-55.8096,0,-48.8859	1/2:47:0,23,24:0:0:23,24:824,855:-137.127,-69.9292,-63.0055,-67.555,0,-60.3303	1/1:47:1,46,0:1:36:46,0:1647,0:-144.846,-10.5501,0,-145.147,-13.8474,-148.085	1/2:42:0,25,16:0:0:25,16:900,555:-118.479,-45.0411,-37.5154,-73.4951,0,-68.6786	1/1:44:0,44,0:0:0:44,0:1572,0:-141.772,-13.2453,0,-141.772,-13.2453,-141.772	1/2:226:0,135,91:0:0:135,91:4854,3197:-656.206,-260.228,-219.589,-396.333,0,-368.939	1/2:134:1,72,61:1:30:72,61:2580,2145:-381.061,-170.948,-151.671,-208.07,0,-192.104	1/1:106:0,106,0:0:0:106,0:3787,0:-340.835,-31.9092,0,-340.835,-31.9092,-340.835	1/1:29:0,29,0:0:0:29,0:1040,0:-93.912,-8.72987,0,-93.912,-8.72987,-93.912	1/2:82:0,74,8:0:0:74,8:2656,280:-239.061,-22.9706,-0.69439,-216.44,0,-214.031	1/1:35:0,35,0:0:0:35,0:1260,0:-113.701,-10.5361,0,-113.701,-10.5361,-113.701	1/1:405:0,405,0:0:0:405,0:14529,0:-1306.73,-121.917,0,-1306.73,-121.917,-1306.73	1/1:150:0,149,0:0:0:149,0:5326,0:-479.157,-44.8535,0,-479.157,-44.8535,-479.157	1/1:29:0,29,0:0:0:29,0:1036,0:-93.2358,-8.72987,0,-93.2358,-8.72987,-93.2358	1/2:198:0,101,97:0:0:101,97:3617,3427:-573.752,-279.096,-248.692,-295.011,0,-265.811	1/2:186:0,102,83:0:0:102,83:3640,2919:-533.464,-236.731,-206.026,-296.838,0,-271.853	1/2:135:0,71,64:0:0:71,64:2556,2257:-392.175,-183.621,-162.248,-208.909,0,-189.644	1/1:13:0,13,0:0:0:13,0:468,0:-42.2684,-3.91339,0,-42.2684,-3.91339,-42.2684	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:15:0,15,0:0:0:15,0:540,0:-48.9237,-4.51545,0,-48.9237,-4.51545,-48.9237	1/2:7:0,2,5:0:0:2,5:72,174:-19.9442,-14.0632,-13.4612,-6.23466,0,-4.72951	1/1:19:0,19,0:0:0:19,0:684,0:-61.8618,-5.71957,0,-61.8618,-5.71957,-61.8618	1/1:173:0,171,0:0:0:171,0:6113,0:-548.758,-51.4761,0,-548.758,-51.4761,-548.758	1/1:247:0,247,0:0:0:247,0:8817,0:-793.166,-74.3544,0,-793.166,-74.3544,-793.166	1/1:46:0,46,0:0:0:46,0:1644,0:-148.232,-13.8474,0,-148.232,-13.8474,-148.232	1/2:5:0,2,3:0:0:2,3:72,108:-15.0328,-9.15779,-8.55573,-6.23466,0,-5.33157	1/1:165:0,165,0:0:0:165,0:5897,0:-530.728,-49.67,0,-530.728,-49.67,-530.728	1/1:30:0,30,0:0:0:30,0:1076,0:-97.134,-9.0309,0,-97.134,-9.0309,-97.134	1/2:206:0,78,128:0:0:78,128:2800,4498:-593.371,-365.073,-341.593,-228.653,0,-190.121	1/2:57:0,29,27:0:0:29,27:1040,963:-163.249,-78.4266,-69.6968,-84.8203,0,-76.6925	1/2:54:0,24,30:0:0:24,30:837,1067:-155.221,-87.1599,-79.9352,-68.4125,0,-59.3816	1/1:98:0,98,0:0:0:98,0:3515,0:-316.534,-29.5009,0,-316.534,-29.5009,-316.534	1/2:185:0,84,100:0:0:84,100:3020,3518:-530.156,-284.109,-258.822,-246.063,0,-215.96	1/1:215:0,215,0:0:0:215,0:7681,0:-690.914,-64.7215,0,-690.914,-64.7215,-690.914	1/1:114:0,111,0:0:0:111,0:3977,0:-357.441,-33.4143,0,-357.441,-33.4143,-357.441	1/1:208:0,208,0:0:0:208,0:7419,0:-667.66,-62.6142,0,-667.66,-62.6142,-667.66	1/1:191:0,189,0:0:0:189,0:6785,0:-610.362,-56.8947,0,-610.362,-56.8947,-610.362	1/2:11:0,5,6:0:0:5,6:180,212:-32.27,-17.582,-16.0768,-15.0445,0,-13.2383	1/1:190:0,190,0:0:0:190,0:6799,0:-611.876,-57.1957,0,-611.876,-57.1957,-611.876	1/1:46:0,46,0:0:0:46,0:1656,0:-149.328,-13.8474,0,-149.328,-13.8474,-149.328	1/2:23:0,13,10:0:0:13,10:468,357:-67.5595,-29.379,-25.4657,-38.538,0,-35.5277	1/2:172:0,80,91:0:0:80,91:2863,3201:-491.646,-259.094,-235.012,-232.56,0,-205.167	1/1:26:0,26,0:0:0:26,0:921,0:-83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chr02	15912004	.	A	C	29420	PASS	AB=0.50741;ABP=4.61927;AC=33;AF=0.175532;AN=188;AO=1736;CIGAR=1X;DP=10368;DPB=10368;DPRA=1.12628;EPP=3660.62;EPPR=18150.2;GTI=1;LEN=1;MEANALT=1.04651;MQM=59.9816;MQMR=59.9945;NS=94;NUMALT=1;ODDS=0.611462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61810;QR=307490;RO=8623;RPL=1723;RPP=3660.62;RPPR=18150.2;RPR=13;RUN=1;SAF=0;SAP=3772.69;SAR=1736;SRF=0;SRP=18727.6;SRR=8623;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1666:0:0:0,-14.1484,-150.226	0/0:234:233,0:233:8315:0:0:0,-70.14,-748.001	0/0:370:370,0:370:13242:0:0:0,-111.381,-1191.58	0/0:159:159,0:159:5695:0:0:0,-47.8638,-512.667	0/1:145:78,67:78:2796:67:2369:-169.818,0,-208.231	0/1:75:48,27:48:1711:27:964:-64.4996,0,-131.698	0/1:170:78,92:78:2770:92:3291:-245.234,0,-198.366	0/0:220:219,1:219:7805:1:36:0,-62.6283,-698.884	0/0:134:133,1:133:4748:1:36:0,-36.7397,-423.88	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:40:17,23:17:608:23:804:-60.6354,0,-43.0108	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:40:17,23:17:608:23:811:-61.2688,0,-43.0108	0/1:50:30,20:30:1072:20:707:-48.9031,0,-81.741	0/1:44:21,23:21:748:23:828:-61.5988,0,-54.4	0/0:57:57,0:57:2023:0:0:0,-17.1587,-182.342	0/1:33:18,15:18:639:15:536:-38.6408,0,-47.9043	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/1:303:145,157:145:5196:157:5578:-410.874,0,-376.508	0/1:160:71,89:71:2532:89:3160:-236.459,0,-179.967	0/0:130:130,0:130:4619:0:0:0,-39.1339,-415.874	0/0:69:69,0:69:2442:0:0:0,-20.7711,-220.035	0/0:213:199,14:199:7123:14:500:0,-18.7832,-595.791	0/0:109:109,0:109:3896:0:0:0,-32.8123,-350.835	0/0:329:328,1:328:11647:1:36:0,-95.4406,-1044.51	0/0:213:213,0:213:7583:0:0:0,-64.1194,-682.511	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:271:144,127:144:5155:127:4522:-325.57,0,-382.511	0/1:178:88,90:88:3152:90:3198:-234.46,0,-230.322	0/1:115:57,58:57:2035:58:2068:-151.773,0,-148.803	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:132:132,0:132:4712:0:0:0,-39.736,-424.241	0/0:245:245,0:245:8709:0:0:0,-73.7523,-783.809	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:162:162,0:162:5771:0:0:0,-48.7669,-519.508	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:234:103,131:103:3658:131:4637:-347.047,0,-258.984	0/1:59:26,33:26:932:33:1184:-89.1075,0,-66.4381	0/1:45:16,29:16:564:29:1032:-79.6471,0,-37.544	0/0:163:163,0:163:5800:0:0:0,-49.0679,-522.118	0/1:201:90,111:90:3198:111:3976:-297.523,0,-227.537	0/0:253:252,1:252:8946:1:36:0,-72.5623,-801.53	0/0:162:162,0:162:5796:0:0:0,-48.7669,-521.754	0/0:179:179,0:179:6400:0:0:0,-53.8844,-576.09	0/0:195:194,0:194:6931:0:0:0,-58.3998,-623.498	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:190:190,0:190:6795:0:0:0,-57.1957,-611.622	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/1:205:105,100:105:3736:100:3546:-257.639,0,-274.732	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/0:92:92,0:92:3265:0:0:0,-27.6948,-294.071	0/0:63:62,0:62:2228:0:0:0,-18.6639,-200.512	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:157:156,1:156:5544:1:36:0,-43.6634,-495.489	0/1:264:141,123:141:4981:123:4403:-316.97,0,-368.969	0/0:63:62,1:62:2211:1:36:0,-15.3666,-195.656	0/0:84:84,0:84:2990:0:0:0,-25.2865,-269.332	0/1:268:124,144:124:4405:144:5134:-381.256,0,-315.948	0/0:167:166,0:166:5899:0:0:0,-49.971,-530.662	0/1:12:5,7:5:172:7:252:-19.4166,0,-12.2056	0/0:68:67,1:67:2400:1:36:0,-16.8718,-212.659	0/1:48:31,17:31:1116:17:612:-40.964,0,-86.3023	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/0:113:111,0:111:3954:0:0:0,-33.4143,-355.712	0/1:103:50,53:50:1784:53:1880:-138.471,0,-129.837	0/0:200:200,0:200:7141:0:0:0,-60.206,-642.72	0/0:208:208,0:208:7426:0:0:0,-62.6142,-668.387	0/0:206:206,0:206:7331:0:0:0,-62.0122,-659.355	0/0:156:154,2:154:5503:2:72:0,-40.124,-488.56	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:148:148,0:148:5276:0:0:0,-44.5524,-474.976	0/1:175:97,78:97:3459:78:2779:-197.671,0,-258.843	0/0:289:289,0:289:10302:0:0:0,-86.9977,-927.11	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:83:82,1:82:2923:1:32:0,-21.7862,-260.106	0/1:26:11,15:11:388:15:531:-40.2951,0,-27.4306	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:28:15,12:15:536:12:428:-30.5097,0,-40.2278	0/1:45:15,30:15:540:30:1076:-83.6065,0,-35.3902	0/0:135:135,0:135:4807:0:0:0,-40.639,-432.788	0/0:82:81,0:81:2903:0:0:0,-24.3834,-261.145
chr02	15916439	.	G	A	256774	PASS	AB=0.497095;ABP=3.2879;AC=153;AF=0.81383;AN=188;AO=9237;CIGAR=1X;DP=11157;DPB=11157;DPRA=59.9731;EPP=19922.2;EPPR=4124.58;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9899;MQMR=60;NS=94;NUMALT=1;ODDS=2.60462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=330408;QR=68471;RO=1918;RPL=3857;RPP=548.295;RPPR=49.2067;RPR=5380;RUN=1;SAF=3841;SAP=571.45;SAR=5396;SRF=853;SRP=53.8939;SRR=1065;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:180:0,180:0:0:180:6430:-578.785,-54.1854,0	1/1:202:0,202:0:0:202:7252:-652.73,-60.8081,0	1/1:240:0,240:0:0:240:8570:-771.298,-72.2472,0	0/1:73:32,41:32:1129:41:1461:-109.809,0,-79.9412	0/1:76:38,38:38:1341:38:1364:-100.182,0,-98.1098	0/1:116:48,68:48:1716:68:2421:-183.225,0,-119.806	1/1:194:0,194:0:0:194:6924:-623.227,-58.3998,0	1/1:99:0,99:0:0:99:3533:-318.178,-29.802,0	1/1:123:0,123:0:0:123:4420:-397.97,-37.0267,0	1/1:112:0,112:0:0:112:4006:-360.727,-33.7154,0	0/1:146:75,71:75:2656:71:2543:-185.17,0,-195.337	1/1:145:0,145:0:0:145:5180:-466.341,-43.6494,0	0/1:167:80,87:80:2863:87:3113:-230.123,0,-207.635	0/1:114:58,56:58:2068:56:2008:-146.676,0,-152.074	0/1:100:51,49:51:1828:49:1760:-128.581,0,-134.698	1/1:164:1,163:1:36:163:5833:-521.483,-45.7706,0	0/1:97:50,47:50:1796:47:1672:-121.567,0,-132.722	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	0/1:188:86,102:86:3080:102:3648:-271.931,0,-220.835	0/1:193:107,86:107:3822:86:3088:-220.048,0,-286.078	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:111:11,100:11:392:100:3592:-290.071,0,-2.20573	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	1/1:257:0,257:0:0:257:9197:-827.699,-77.3647,0	1/1:303:0,303:0:0:303:10837:-975.228,-91.2121,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	0/1:256:121,135:121:4340:135:4847:-359.318,0,-313.711	0/1:120:55,65:55:1957:65:2321:-173.025,0,-140.28	0/1:103:50,53:50:1787:53:1908:-140.991,0,-130.106	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:333:0,333:0:0:333:11921:-1072.74,-100.243,0	1/1:104:0,104:0:0:104:3689:-332.211,-31.3071,0	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:171:0,171:0:0:171:6130:-551.783,-51.4761,0	1/1:44:0,44:0:0:44:1579:-142.401,-13.2453,0	0/1:151:87,64:87:3086:64:2288:-160.726,0,-232.511	0/1:123:65,58:65:2336:58:2084:-150.803,0,-173.473	0/1:113:67,46:67:2379:46:1640:-113.872,0,-180.349	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:111:65,46:65:2323:46:1640:-114.473,0,-175.915	1/1:168:1,166:1:36:166:5917:-529.115,-46.9586,0	1/1:90:0,90:0:0:90:3209:-289.031,-27.0927,0	1/1:181:0,181:0:0:181:6489:-584.092,-54.4864,0	1/1:116:0,116:0:0:116:4122:-371.165,-34.9195,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:156:0,156:0:0:156:5585:-502.771,-46.9607,0	1/1:47:0,47:0:0:47:1667:-150.317,-14.1484,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:195:80,115:80:2848:115:4095:-310.034,0,-197.858	1/1:30:0,30:0:0:30:1057:-95.439,-9.0309,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	1/1:100:0,100:0:0:100:3573:-321.776,-30.103,0	1/1:166:1,165:1:36:165:5902:-527.69,-46.3727,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:218:0,218:0:0:218:7812:-703.105,-65.6245,0	0/1:232:133,99:133:4734:99:3541:-249.058,0,-356.379	1/1:79:5,74:5:180:74:2652:-222.374,-7.22931,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	0/1:138:75,63:75:2666:63:2241:-160.41,0,-198.643	1/1:141:1,140:1:36:140:4994:-446.008,-38.847,0	0/1:59:30,29:30:1068:29:1044:-76.514,0,-78.6713	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	0/1:160:69,91:69:2472:91:3248:-244.375,0,-174.569	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:152:69,83:69:2472:83:2975:-222.225,0,-176.977	1/1:193:0,193:0:0:193:6903:-621.338,-58.0988,0	1/1:235:0,235:0:0:235:8395:-755.553,-70.7421,0	1/1:99:0,99:0:0:99:3548:-319.259,-29.802,0	1/1:170:1,169:1:36:169:6047:-540.735,-47.5768,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:139:1,138:1:36:138:4956:-442.589,-38.2449,0	0/1:159:103,56:103:3692:56:1998:-132.229,0,-284.618	1/1:211:1,210:1:36:210:7514:-672.7,-59.9191,0	1/1:134:0,134:0:0:134:4784:-430.703,-40.338,0	1/1:124:0,124:0:0:124:4441:-399.859,-37.3277,0	1/1:131:0,130:0:0:130:4663:-419.47,-39.1339,0	1/1:236:0,236:0:0:236:8447:-760.231,-71.0431,0	0/1:54:30,24:30:1072:24:860:-61.4662,0,-80.5368	1/1:129:0,129:0:0:129:4596:-413.805,-38.8329,0	1/1:114:0,114:0:0:114:4046:-364.328,-34.3174,0	1/1:76:0,76:0:0:76:2717:-244.772,-22.8783,0	0/1:153:84,69:84:3000:69:2466:-176.136,0,-224.175	0/1:95:68,27:68:2436:27:953:-57.4855,0,-190.897	1/1:187:0,187:0:0:187:6716:-604.512,-56.2926,0	1/1:232:0,232:0:0:232:8273:-744.58,-69.839,0
chr02	15929283	.	CTG	CTC,TTC	119135	PASS	AB=0.431271,0.567583;ABP=74.6465,72.2785;AC=152,34;AF=0.817204,0.182796;AN=186;AO=4468,1002;CIGAR=2M1X,1X1M1X;DP=5478;DPB=5479;DPRA=29.7609,0.931045;EPP=9705.15,2178.83;EPPR=9.52472;GTI=2;LEN=1,3;MEANALT=1.48913,2;MQM=59.7019,59.2196;MQMR=58.6667;NS=93;NUMALT=2;ODDS=2.09128;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=52,52;PQR=0;PRO=0;QA=158725,34878;QR=84;RO=3;RPL=2,0;RPP=9687.79,2178.83;RPPR=9.52472;RPR=4466,1002;RUN=1,1;SAF=2,0;SAP=9687.79,2178.83;SAR=4466,1002;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:460,0:-41.7354,-3.91339,0,-41.7354,-3.91339,-41.7354	1/1:58:0,58,0:0:0:58,0:2043,0:-184.125,-17.4597,0,-184.125,-17.4597,-184.125	1/1:61:0,61,0:0:0:61,0:2180,0:-196.45,-18.3628,0,-196.45,-18.3628,-196.45	1/1:80:0,80,0:0:0:80,0:2848,0:-256.488,-24.0824,0,-256.488,-24.0824,-256.488	1/2:12:0,3,9:0:0:3,9:108,317:-34.9524,-26.1381,-25.235,-9.17208,0,-6.46281	1/2:28:0,18,10:0:0:18,10:648,339:-80.6495,-27.8269,-22.4083,-53.1689,0,-50.1586	1/2:55:0,23,32:0:0:23,32:820,1095:-156.005,-89.1561,-82.2324,-67.1988,0,-57.5659	1/1:107:0,107,0:0:0:107,0:3805,0:-342.588,-32.2102,0,-342.588,-32.2102,-342.588	1/1:39:0,39,0:0:0:39,0:1391,0:-125.477,-11.7402,0,-125.477,-11.7402,-125.477	1/1:35:0,34,1:0:0:34,1:1220,27:-109.877,-10.235,0,-108.242,-8.38097,-107.941	1/1:50:0,50,0:0:0:50,0:1765,0:-159.126,-15.0515,0,-159.126,-15.0515,-159.126	1/2:52:0,22,30:0:0:22,30:770,1043:-147.778,-85.1303,-78.5077,-62.9967,0,-53.9658	1/1:71:0,70,0:0:0:70,0:2495,0:-224.429,-21.0721,0,-224.429,-21.0721,-224.429	1/2:74:0,28,46:0:0:28,46:989,1592:-210.254,-129.717,-121.288,-80.887,0,-67.0396	1/2:53:0,25,28:0:0:25,28:896,989:-153.972,-80.8928,-73.367,-73.4346,0,-65.0058	1/2:41:0,16,25:0:0:16,25:576,845:-115.781,-68.7737,-63.9572,-47.3585,0,-39.8328	1/1:62:0,62,0:0:0:62,0:2211,0:-199.221,-18.6639,0,-199.221,-18.6639,-199.221	1/2:59:0,28,31:0:0:28,31:983,1076:-167.809,-87.8122,-79.3833,-80.3455,0,-71.0136	1/1:45:0,45,0:0:0:45,0:1602,0:-144.402,-13.5464,0,-144.402,-13.5464,-144.402	1/2:89:0,40,49:0:0:40,49:1436,1661:-252.07,-134.931,-122.89,-117.49,0,-102.739	1/2:108:0,42,66:0:0:42,66:1469,2303:-307.147,-187.638,-174.995,-119.858,0,-99.9904	1/1:44:0,44,0:0:0:44,0:1553,0:-140.06,-13.2453,0,-140.06,-13.2453,-140.06	1/1:17:0,17,0:0:0:17,0:599,0:-54.2389,-5.11751,0,-54.2389,-5.11751,-54.2389	1/2:35:0,31,4:0:0:31,4:1103,134:-101.075,-11.1635,-1.83152,-90.2479,0,-89.0438	1/1:19:0,19,0:0:0:19,0:658,0:-59.5132,-5.71957,0,-59.5132,-5.71957,-59.5132	1/1:221:1,220,0:1:20:220,0:7846,0:-704.168,-64.5277,0,-704.469,-66.2266,-705.967	1/1:68:0,68,0:0:0:68,0:2432,0:-219.136,-20.47,0,-219.136,-20.47,-219.136	1/1:24:0,24,0:0:0:24,0:860,0:-77.6902,-7.22472,0,-77.6902,-7.22472,-77.6902	1/2:80:0,41,39:0:0:41,39:1458,1377:-231.304,-112.488,-100.146,-119.17,0,-107.43	1/2:87:0,35,52:0:0:35,52:1217,1771:-242.96,-144.014,-133.478,-99.2904,0,-83.6368	1/2:47:0,14,33:0:0:14,33:496,1144:-133.638,-93.2301,-89.0157,-40.7598,0,-30.8258	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:178:0,178,0:0:0:178,0:6308,0:-567.81,-53.5833,0,-567.81,-53.5833,-567.81	1/1:145:0,145,0:0:0:145,0:5164,0:-464.838,-43.6494,0,-464.838,-43.6494,-464.838	1/1:62:0,62,0:0:0:62,0:2208,0:-198.945,-18.6639,0,-198.945,-18.6639,-198.945	.:.:.:.:.:.:.:.	1/1:52:0,52,0:0:0:52,0:1848,0:-166.571,-15.6536,0,-166.571,-15.6536,-166.571	1/1:41:0,41,0:0:0:41,0:1464,0:-132.042,-12.3422,0,-132.042,-12.3422,-132.042	1/2:80:0,32,48:0:0:32,48:1152,1673:-230.115,-136.121,-126.488,-94.349,0,-79.8996	1/2:69:0,25,44:0:0:25,44:896,1531:-197.884,-124.803,-117.278,-73.4346,0,-60.1893	1/2:62:0,33,29:0:0:33,29:1158,1007:-176.421,-82.179,-72.245,-94.591,0,-85.8612	1/1:65:0,64,0:0:0:64,0:2273,0:-204.47,-19.2659,0,-204.47,-19.2659,-204.47	1/2:47:0,25,22:0:0:25,22:900,759:-135.112,-61.6843,-54.1586,-73.7789,0,-67.1562	1/1:144:0,143,1:0:0:143,1:5077,34:-456.71,-43.0473,0,-453.952,-39.9494,-453.651	1/1:70:0,70,0:0:0:70,0:2516,0:-226.677,-21.0721,0,-226.677,-21.0721,-226.677	1/1:45:0,45,0:0:0:45,0:1608,0:-145.005,-13.5464,0,-145.005,-13.5464,-145.005	1/1:134:0,134,0:0:0:134,0:4762,0:-428.541,-40.338,0,-428.541,-40.338,-428.541	1/2:8:0,3,5:0:0:3,5:104,180:-23.4951,-15.0469,-14.1438,-8.79971,0,-7.29456	1/1:54:1,52,1:1:36:52,1:1830,36:-161.387,-12.6985,0,-159.068,-13.0507,-161.704	1/1:27:0,27,0:0:0:27,0:972,0:-87.797,-8.12781,0,-87.797,-8.12781,-87.797	1/2:11:0,2,9:0:0:2,9:68,320:-31.9462,-26.4333,-25.8312,-5.85565,0,-3.14638	1/2:61:0,25,36:0:0:25,36:887,1283:-177.182,-104.914,-97.3887,-72.6224,0,-61.7853	1/1:30:0,30,0:0:0:30,0:1052,0:-94.9905,-9.0309,0,-94.9905,-9.0309,-94.9905	2/2:2:0,0,2:0:0:0,2:0,67:-6.36284,-6.36284,-6.36284,-0.60206,-0.60206,0	1/2:7:0,3,4:0:0:3,4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chr02	15929294	.	CT	TT,TG	117231	PASS	AB=0.428817,0.56946;ABP=79.6775,76.0127;AC=152,34;AF=0.817204,0.182796;AN=186;AO=4409,1003;CIGAR=1X1M,2X;DP=5422;DPB=5422;DPRA=29.4565,0.93295;EPP=9577.03,2181;EPPR=13.8677;GTI=2;LEN=1,2;MEANALT=1.47826,2.02439;MQM=59.6804,59.2124;MQMR=55;NS=93;NUMALT=2;ODDS=1.67615;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=155875,35119;QR=172;RO=5;RPL=2,0;RPP=9559.67,2181;RPPR=13.8677;RPR=4407,1003;RUN=1,1;SAF=2,0;SAP=9559.67,2181;SAR=4407,1003;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:55:0,55,0:0:0:55,0:1964,0:-177.023,-16.5567,0,-177.023,-16.5567,-177.023	1/1:62:0,62,0:0:0:62,0:2199,0:-198.151,-18.6639,0,-198.151,-18.6639,-198.151	1/1:79:0,79,0:0:0:79,0:2816,0:-253.667,-23.7814,0,-253.667,-23.7814,-253.667	1/2:11:0,2,9:0:0:2,9:72,313:-31.6503,-25.7732,-25.1711,-6.23466,0,-3.52539	1/2:27:0,17,10:0:0:17,10:595,354:-77.532,-29.1895,-24.072,-48.6947,0,-45.6844	1/2:60:0,28,32:0:0:28,32:968,1124:-170.422,-91.7725,-83.3437,-78.9971,0,-69.3641	1/1:105:0,105,0:0:0:105,0:3741,0:-336.827,-31.6082,0,-336.827,-31.6082,-336.827	1/1:39:0,39,0:0:0:39,0:1384,0:-124.859,-11.7402,0,-124.859,-11.7402,-124.859	1/1:33:0,32,1:0:0:32,1:1140,36:-102.672,-9.63296,0,-100.926,-7.65512,-100.625	1/1:50:0,50,0:0:0:50,0:1753,0:-158.035,-15.0515,0,-158.035,-15.0515,-158.035	1/2:54:0,24,30:0:0:24,30:844,1034:-153.023,-84.3172,-77.0925,-69.0542,0,-60.0233	1/1:71:0,71,0:0:0:71,0:2518,0:-226.858,-21.3731,0,-226.858,-21.3731,-226.858	1/2:72:0,26,46:0:0:26,46:920,1599:-205.282,-130.346,-122.52,-75.287,0,-61.4396	1/2:52:0,24,28:0:0:24,28:848,993:-150.313,-81.2535,-74.0288,-69.4131,0,-60.9842	1/2:43:0,18,25:0:0:18,25:623,847:-119.586,-68.9541,-63.5356,-50.9746,0,-43.4488	1/1:60:0,60,0:0:0:60,0:2119,0:-190.94,-18.0618,0,-190.94,-18.0618,-190.94	1/2:59:0,27,32:0:0:27,32:960,1108:-168.611,-90.3815,-82.2537,-78.5803,0,-68.9473	1/1:42:0,42,0:0:0:42,0:1487,0:-134.057,-12.6433,0,-134.057,-12.6433,-134.057	1/2:87:0,38,48:0:0:38,48:1344,1676:-245.728,-136.263,-124.823,-109.457,0,-95.0077	1/2:107:0,41,66:0:0:41,66:1442,2331:-307.512,-190.137,-177.795,-117.728,0,-97.8595	1/1:42:0,42,0:0:0:42,0:1467,0:-132.324,-12.6433,0,-132.324,-12.6433,-132.324	1/1:15:0,15,0:0:0:15,0:521,0:-47.2163,-4.51545,0,-47.2163,-4.51545,-47.2163	1/2:34:0,30,4:0:0:30,4:1041,144:-96.6925,-12.0865,-3.05562,-84.9637,0,-83.7596	1/1:19:0,19,0:0:0:19,0:680,0:-61.4683,-5.71957,0,-61.4683,-5.71957,-61.4683	1/1:220:0,220,0:0:0:220,0:7789,0:-700.956,-66.2266,0,-700.956,-66.2266,-700.956	1/1:67:0,67,0:0:0:67,0:2392,0:-215.537,-20.169,0,-215.537,-20.169,-215.537	1/1:25:0,25,0:0:0:25,0:875,0:-79.0412,-7.52575,0,-79.0412,-7.52575,-79.0412	1/2:79:0,40,39:0:0:40,39:1428,1392:-230.256,-113.838,-101.797,-116.775,0,-105.034	1/2:87:0,34,53:0:0:34,53:1216,1795:-245.025,-145.868,-135.633,-99.5069,0,-83.5523	1/2:45:0,12,33:0:0:12,33:432,1120:-126.363,-91.1086,-87.4963,-35.6088,0,-25.6748	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:3:0,2,1:0:0:2,1:72,34:-8.98601,-3.09788,-2.49582,-6.23466,0,-5.93363	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:169:0,169,0:0:0:169,0:5949,0:-535.515,-50.8741,0,-535.515,-50.8741,-535.515	1/1:144:0,144,0:0:0:144,0:5105,0:-459.472,-43.3483,0,-459.472,-43.3483,-459.472	1/1:60:0,60,0:0:0:60,0:2107,0:-189.859,-18.0618,0,-189.859,-18.0618,-189.859	.:.:.:.:.:.:.:.	1/1:49:0,49,0:0:0:49,0:1739,0:-156.767,-14.7505,0,-156.767,-14.7505,-156.767	1/1:38:0,38,0:0:0:38,0:1344,0:-121.254,-11.4391,0,-121.254,-11.4391,-121.254	1/2:75:0,27,48:0:0:27,48:940,1708:-215.567,-139.134,-131.007,-76.783,0,-62.3336	1/2:68:0,24,44:0:0:24,44:844,1534:-193.776,-125.073,-117.848,-69.0542,0,-55.8089	1/2:60:0,31,29:0:0:31,29:1080,1012:-170.464,-82.6386,-73.3066,-88.1738,0,-79.444	1/1:64:0,64,0:0:0:64,0:2292,0:-206.54,-19.2659,0,-206.54,-19.2659,-206.54	1/2:45:0,25,20:0:0:25,20:896,704:-130.408,-57.343,-49.8172,-73.4182,0,-67.3976	1/1:141:0,140,1:0:0:140,1:4941,36:-444.461,-42.1442,0,-441.524,-38.847,-441.223	1/1:70:0,70,0:0:0:70,0:2483,0:-223.713,-21.0721,0,-223.713,-21.0721,-223.713	1/1:45:0,45,0:0:0:45,0:1585,0:-142.934,-13.5464,0,-142.934,-13.5464,-142.934	1/1:129:0,129,0:0:0:129,0:4554,0:-410.024,-38.8329,0,-410.024,-38.8329,-410.024	1/2:9:0,4,5:0:0:4,5:140,178:-26.2514,-14.8635,-13.6594,-11.7405,0,-10.2353	1/1:54:1,52,1:1:36:52,1:1847,36:-162.91,-12.6985,0,-160.591,-13.0507,-163.227	1/1:27:0,27,0:0:0:27,0:934,0:-84.3678,-8.12781,0,-84.3678,-8.12781,-84.3678	1/2:11:0,2,9:0:0:2,9:72,322:-32.4902,-26.6149,-26.0129,-6.23466,0,-3.52539	1/2:62:0,25,37:0:0:25,37:892,1327:-181.28,-108.563,-101.038,-73.0739,0,-61.9358	1/1:31:0,31,0:0:0:31,0:1100,0:-99.3021,-9.33193,0,-99.3021,-9.33193,-99.3021	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:7:0,3,4:0:0:3,4:108,14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chr02	15929324	.	C	T	100220	PASS	AB=0.434537;ABP=68.9682;AC=152;AF=0.817204;AN=186;AO=4589;CIGAR=1X;DP=5603;DPB=5603;DPRA=30.4402;EPP=9950.53;EPPR=2194.03;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.6513;MQMR=59.305;NS=93;NUMALT=1;ODDS=2.57184;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163787;QR=36132;RO=1013;RPL=4587;RPP=9950.53;RPPR=2194.03;RPR=2;RUN=1;SAF=0;SAP=9967.9;SAR=4589;SRF=0;SRP=2202.71;SRR=1013;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:59:0,59:0:0:59:2074:-186.924,-17.7608,0	1/1:62:0,62:0:0:62:2224:-200.4,-18.6639,0	1/1:82:0,82:0:0:82:2921:-263.113,-24.6845,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8709	0/1:27:9,18:9:324:18:648:-50.4596,0,-21.378	0/1:62:32,30:32:1133:30:1080:-78.8466,0,-83.5201	1/1:113:0,113:0:0:113:4008:-360.854,-34.0164,0	1/1:42:0,42:0:0:42:1512:-136.358,-12.6433,0	1/1:34:0,34:0:0:34:1204:-108.495,-10.235,0	1/1:50:0,50:0:0:50:1800:-162.275,-15.0515,0	0/1:56:32,24:32:1148:24:856:-60.5034,0,-86.7545	1/1:71:0,71:0:0:71:2552:-229.916,-21.3731,0	0/1:75:45,30:45:1620:30:1080:-74.9217,0,-123.49	0/1:52:26,26:26:921:26:928:-68.1801,0,-67.5493	0/1:43:25,18:25:855:18:648:-45.7076,0,-64.2549	1/1:60:0,60:0:0:60:2148:-193.556,-18.0618,0	0/1:60:32,28:32:1148:28:994:-71.7107,0,-85.568	1/1:46:0,46:0:0:46:1656:-149.254,-13.8474,0	0/1:89:49,40:49:1749:40:1421:-101.391,0,-130.804	0/1:109:66,42:66:2357:42:1512:-103.645,0,-179.618	1/1:46:0,46:0:0:46:1633:-147.256,-13.8474,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:35:4,31:4:144:31:1116:-90.2156,0,-2.75459	1/1:19:0,19:0:0:19:680:-61.4683,-5.71957,0	1/1:227:0,227:0:0:227:8002:-720.112,-68.3338,0	1/1:69:0,69:0:0:69:2461:-221.743,-20.7711,0	1/1:25:0,25:0:0:25:896:-80.9287,-7.52575,0	0/1:77:37,40:37:1324:40:1425:-105.364,0,-96.2828	0/1:86:53,33:53:1904:33:1169:-79.6221,0,-145.749	0/1:48:34,14:34:1215:14:496:-30.5248,0,-95.1756	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:3:1,2:1:36:2:57:-4.51022,0,-2.69518	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:179:0,179:0:0:179:6419:-577.783,-53.8844,0	1/1:152:0,152:0:0:152:5403:-486.275,-45.7566,0	1/1:62:0,62:0:0:62:2232:-201.103,-18.6639,0	.:.:.:.:.:.:.:.	1/1:51:0,51:0:0:51:1832:-165.134,-15.3525,0	1/1:41:0,41:0:0:41:1476:-133.122,-12.3422,0	0/1:78:47,31:47:1665:31:1093:-75.1892,0,-126.256	0/1:69:44,25:44:1569:25:900:-60.5499,0,-120.694	0/1:62:30,32:30:1076:32:1152:-85.3263,0,-78.4582	1/1:69:0,69:0:0:69:2465:-222.101,-20.7711,0	0/1:46:21,25:21:748:25:896:-67.0966,0,-53.4793	1/1:152:2,150:2:72:150:5358:-475.486,-38.9198,0	1/1:72:0,72:0:0:72:2577:-232.163,-21.6742,0	1/1:46:0,46:0:0:46:1652:-148.964,-13.8474,0	1/1:135:0,135:0:0:135:4818:-433.395,-40.6391,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:56:1,55:1:36:55:1980:-174.538,-13.2594,0	1/1:28:0,28:0:0:28:989:-89.3211,-8.42884,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:61:37,24:37:1328:24:864:-59.7197,0,-101.429	1/1:31:0,31:0:0:31:1116:-100.744,-9.33193,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.1482	1/1:54:0,54:0:0:54:1898:-171.072,-16.2556,0	1/1:102:1,101:1:36:101:3611:-321.573,-27.1068,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:89:0,89:0:0:89:3176:-286.058,-26.7917,0	0/1:79:47,32:47:1688:32:1152:-80.199,0,-128.397	1/1:25:1,24:1:36:24:864:-74.4715,-3.92748,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:106:67,39:67:2381:39:1396:-94.0182,0,-182.113	1/1:105:2,103:2:68:103:3677:-324.645,-25.1504,0	0/1:17:8,9:8:288:9:324:-24.3837,0,-21.1272	1/1:58:0,58:0:0:58:2084:-187.797,-17.4597,0	0/1:77:37,40:37:1324:40:1425:-105.362,0,-96.226	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:95:0,95:0:0:95:3392:-305.447,-28.5979,0	0/1:67:34,33:34:1220:33:1184:-86.6572,0,-89.8673	1/1:102:0,102:0:0:102:3652:-328.869,-30.7051,0	1/1:56:0,56:0:0:56:1970:-177.561,-16.8577,0	1/1:36:0,36:0:0:36:1277:-115.215,-10.8371,0	1/1:65:1,64:1:36:64:2274:-201.324,-15.9882,0	1/1:9:0,9:0:0:9:320:-29.1341,-2.70927,0	1/1:46:0,46:0:0:46:1634:-147.315,-13.8474,0	0/1:38:24,14:24:841:14:489:-32.8998,0,-64.5496	1/1:116:0,116:0:0:116:4102:-369.032,-34.9195,0	1/1:134:0,134:0:0:134:4770:-429.174,-40.338,0	1/1:56:0,56:0:0:56:1996:-179.905,-16.8577,0	1/1:69:0,69:0:0:69:2446:-220.39,-20.7711,0	1/1:124:0,124:0:0:124:4460:-401.558,-37.3277,0	0/1:37:26,11:26:932:11:392:-24.4819,0,-73.0407	1/1:66:0,66:0:0:66:2356:-212.225,-19.868,0	1/1:63:0,63:0:0:63:2253:-203.015,-18.9649,0	1/1:53:1,52:1:36:52:1868:-165.148,-12.7084,0	0/1:101:60,41:60:2137:41:1468:-102.004,0,-162.134	0/1:73:47,26:47:1657:26:936:-62.4908,0,-127.381	1/1:46:1,45:1:36:45:1597:-140.415,-10.2491,0	1/1:83:0,83:0:0:83:2969:-267.426,-24.9855,0
chr02	15943078	.	ACTCG	ACTCA	123903	PASS	AB=0.4654;ABP=24.3483;AC=154;AF=0.819149;AN=188;AO=5626;CIGAR=4M1X;DP=6770;DPB=6770.2;DPRA=18.375;EPP=12193.7;EPPR=2398.15;GTI=4;LEN=1;MEANALT=1.36957;MQM=59.6758;MQMR=59.8627;NS=94;NUMALT=1;ODDS=1.39502;PAIRED=0;PAIREDR=0;PAO=1;PQA=36;PQR=0;PRO=0;QA=201521;QR=38797;RO=1107;RPL=3;RPP=12193.7;RPPR=2398.15;RPR=5623;RUN=1;SAF=5626;SAP=12219.7;SAR=0;SRF=1107;SRP=2406.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1144:-103.255,-9.63296,0	1/1:53:0,52:0:0:52:1849:-166.001,-15.6536,0	1/1:98:0,98:0:0:98:3496:-314.842,-29.5009,0	1/1:274:0,271:0:0:271:9688:-871.373,-81.5791,0	0/1:21:5,16:5:175:16:572:-45.4918,0,-9.77181	0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863	0/1:35:13,22:13:455:22:788:-60.7006,0,-30.7467	1/1:93:0,93:0:0:93:3344:-301.152,-27.9958,0	1/1:76:0,75:0:0:75:2692:-242.138,-22.5773,0	1/1:66:0,66:0:0:66:2368:-213.377,-19.868,0	1/1:59:0,58:0:0:58:2078:-186.933,-17.4597,0	0/1:110:61,48:61:2147:48:1726:-122.432,0,-160.328	1/1:86:1,85:1:27:85:3051:-272.087,-23.1888,0	0/1:53:27,26:27:950:26:932:-68.2443,0,-69.8603	0/1:74:39,35:39:1381:35:1260:-91.4231,0,-100.639	0/1:72:36,36:36:1279:36:1296:-95.2698,0,-93.7396	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:46:31,15:31:1081:15:540:-35.0754,0,-83.7486	1/1:26:0,26:0:0:26:932:-84.1927,-7.82678,0	0/1:98:63,34:63:2214:34:1220:-80.6211,0,-170.073	0/1:145:66,79:66:2306:79:2821:-210.465,0,-164.153	1/1:84:0,84:0:0:84:2991:-269.42,-25.2865,0	1/1:41:1,40:1:36:40:1432:-125.579,-8.74396,0	1/1:51:4,45:4:144:45:1620:-132.788,-1.76893,0	1/1:44:0,44:0:0:44:1580:-142.478,-13.2453,0	1/1:104:0,104:0:0:104:3711:-334.012,-31.3071,0	1/1:219:0,216:0:0:216:7721:-694.482,-65.0225,0	1/1:25:0,25:0:0:25:896:-80.9466,-7.52575,0	0/1:191:87,102:87:3069:102:3635:-269.61,0,-219.26	0/1:85:48,37:48:1666:37:1332:-94.277,0,-124.637	0/1:72:42,30:42:1492:30:1072:-75.1007,0,-112.9	1/1:15:0,12:0:0:12:432:-38.8622,-3.61236,0	1/1:27:0,27:0:0:27:968:-87.4236,-8.12781,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:219:0,219:0:0:219:7861:-707.474,-65.9256,0	1/1:171:0,170:0:0:170:6073:-546.273,-51.1751,0	1/1:65:0,65:0:0:65:2332:-210.139,-19.567,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:100:0,100:0:0:100:3588:-323.082,-30.103,0	1/1:34:0,34:0:0:34:1220:-110.079,-10.235,0	0/1:96:68,28:68:2344:28:1004:-61.771,0,-182.323	0/1:55:26,29:26:911:29:1044:-77.6002,0,-65.6908	0/1:55:29,25:29:1008:25:896:-64.4716,0,-74.5581	1/1:159:0,159:0:0:159:5712:-514.11,-47.8638,0	0/1:109:67,40:67:2339:40:1436:-96.9691,0,-178.202	1/1:109:1,108:1:36:108:3876:-345.4,-29.214,0	1/1:16:0,16:0:0:16:576:-52.1182,-4.81648,0	1/1:78:0,78:0:0:78:2800:-252.239,-23.4803,0	1/1:112:0,111:0:0:111:3988:-358.807,-33.4143,0	0/1:8:5,3:5:178:3:108:-7.66693,0,-13.9604	1/1:125:0,124:0:0:124:4456:-400.85,-37.3277,0	1/1:19:0,19:0:0:19:684:-61.8727,-5.71957,0	0/0:7:7,0:7:246:0:0:0,-2.10721,-22.482	0/1:98:45,53:45:1589:53:1892:-141.055,0,-113.799	1/1:40:0,40:0:0:40:1421:-128.136,-12.0412,0	0/1:6:5,1:5:179:1:36:-1.79209,0,-14.6542	0/1:14:7,7:7:242:7:252:-18.8145,0,-17.9022	1/1:29:0,27:0:0:27:964:-86.7781,-8.12781,0	1/1:76:0,76:0:0:76:2723:-245.223,-22.8783,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:126:0,125:0:0:125:4452:-400.302,-37.6288,0	0/1:79:35,43:35:1235:43:1548:-115.782,0,-87.6283	1/1:31:0,30:0:0:30:1067:-96.0862,-9.0309,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	0/1:117:61,56:61:2084:56:2008:-145.762,0,-152.599	1/1:108:0,108:0:0:108:3864:-347.785,-32.5112,0	1/1:49:0,48:0:0:48:1728:-155.48,-14.4494,0	1/1:30:0,30:0:0:30:1076:-97.1495,-9.0309,0	0/1:31:18,13:18:627:13:468:-33.1277,0,-47.4229	1/1:9:0,9:0:0:9:312:-28.4135,-2.70927,0	1/1:135:0,133:0:0:133:4765:-428.633,-40.037,0	0/1:77:43,34:43:1525:34:1220:-86.9137,0,-114.364	1/1:90:0,90:0:0:90:3228:-290.685,-27.0927,0	1/1:106:0,105:0:0:105:3749:-337.25,-31.6082,0	1/1:50:1,48:1:36:48:1711:-150.682,-11.5064,0	1/1:55:1,54:1:36:54:1942:-171.43,-12.9584,0	1/1:26:2,24:2:71:24:856:-70.6135,-1.08472,0	1/1:79:0,79:0:0:79:2824:-254.27,-23.7814,0	0/1:70:33,36:33:1151:36:1296:-95.7846,0,-82.7624	1/1:153:0,153:0:0:153:5461:-491.599,-46.0576,0	1/1:44:0,44:0:0:44:1561:-140.748,-13.2453,0	1/1:61:0,61:0:0:61:2185:-196.888,-18.3628,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:151:0,150:0:0:150:5380:-483.59,-45.1545,0	0/1:32:17,15:17:603:15:540:-39.2898,0,-44.9677	1/1:70:0,70:0:0:70:2512:-226.282,-21.0721,0	1/1:92:0,92:0:0:92:3312:-297.911,-27.6948,0	1/1:51:0,50:0:0:50:1800:-161.895,-15.0515,0	0/1:129:56,73:56:1962:73:2624:-197.574,0,-138	0/1:61:49,12:49:1722:12:424:-20.1334,0,-136.901	1/1:111:0,111:0:0:111:3968:-356.909,-33.4143,0	1/1:82:0,82:0:0:82:2935:-264.359,-24.6845,0
chr02	15971753	.	A	G	15023.5	PASS	AB=0.439781;ABP=72.0536;AC=34;AF=0.180851;AN=188;AO=977;CIGAR=1X;DP=7277;DPB=7277;DPRA=0.891035;EPP=2124.54;EPPR=13674.6;GTI=3;LEN=1;MEANALT=1;MQM=59.9806;MQMR=59.9948;NS=94;NUMALT=1;ODDS=0.011958;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34589;QR=224896;RO=6300;RPL=0;RPP=2124.54;RPPR=13674.6;RPR=977;RUN=1;SAF=0;SAP=2124.54;SAR=977;SRF=0;SRP=13683.3;SRR=6300;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/0:142:142,0:142:5076:0:0:0,-42.7463,-456.982	0/0:248:248,0:248:8836:0:0:0,-74.6554,-795.227	0/1:34:20,14:20:716:14:496:-34.7392,0,-54.5327	0/1:25:14,11:14:504:11:387:-27.6402,0,-38.1723	0/1:54:25,29:25:891:29:1036:-77.2977,0,-64.2532	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.497	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.465	0/1:103:63,40:63:2238:40:1416:-96.7307,0,-170.677	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:41:23,18:23:819:18:640:-45.5871,0,-61.6893	0/1:85:56,29:56:1997:29:1035:-67.8755,0,-154.414	0/1:49:28,21:28:1004:21:729:-51.1785,0,-75.9254	0/0:44:44,0:44:1553:0:0:0,-13.2453,-140.06	0/1:27:18,9:18:644:9:309:-20.0129,0,-50.1628	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:179:99,80:99:3538:80:2795:-197.904,0,-264.744	0/1:133:80,53:80:2868:53:1866:-128.181,0,-218.32	0/0:107:107,0:107:3790:0:0:0,-32.2102,-341.298	0/0:109:109,0:109:3886:0:0:0,-32.8123,-349.935	0/1:28:25,3:25:887:3:104:-1.27397,0,-71.7193	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:171:171,0:171:6115:0:0:0,-51.4761,-550.451	0/0:219:219,0:219:7823:0:0:0,-65.9256,-704.098	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:211:106,105:106:3797:105:3768:-275.801,0,-278.409	0/1:69:33,36:33:1184:36:1266:-93.4701,0,-86.0972	0/1:75:44,31:44:1576:31:1104:-77.0934,0,-119.554	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:6:2,4:2:68:4:140:-11.1384,0,-4.65153	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:189:189,0:189:6730:0:0:0,-56.8947,-605.776	0/0:141:141,0:141:5056:0:0:0,-42.4452,-455.184	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.006	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:143:85,58:85:3039:58:2033:-140.191,0,-230.692	0/1:33:22,11:22:777:11:372:-23.8709,0,-60.3164	0/1:60:39,21:39:1404:21:743:-49.1315,0,-108.597	0/0:116:116,0:116:4119:0:0:0,-34.9195,-370.866	0/1:80:43,37:43:1540:37:1316:-94.6136,0,-114.811	0/0:88:88,0:88:3159:0:0:0,-26.4906,-284.505	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.977	0/0:95:95,0:95:3397:0:0:0,-28.5978,-305.943	0/0:127:127,0:127:4518:0:0:0,-38.2308,-406.787	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/0:112:112,0:112:3992:0:0:0,-33.7154,-359.469	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.802	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:137:85,52:85:3029:52:1843:-124.908,0,-231.598	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.006	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:87:86,1:86:3060:1:32:0,-22.9903,-272.428	0/0:90:89,1:89:3178:1:36:0,-23.4944,-282.645	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:196:196,0:196:7000:0:0:0,-59.0019,-630.066	0/1:81:49,32:49:1751:32:1130:-77.6243,0,-133.49	0/0:58:56,2:56:1968:2:72:0,-10.623,-170.556	0/0:63:62,1:62:2211:1:36:0,-15.3666,-195.656	0/1:167:76,91:76:2709:91:3226:-240.289,0,-193.781	0/0:107:107,0:107:3816:0:0:0,-32.2102,-343.639	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:28:15,13:15:513:13:468:-34.0308,0,-38.064	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:134:134,0:134:4788:0:0:0,-40.338,-431.075	0/1:75:42,33:42:1504:33:1180:-83.9308,0,-113.077	0/0:127:127,0:127:4501:0:0:0,-38.2308,-405.259	0/0:149:149,0:149:5352:0:0:0,-44.8535,-481.81	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:100:99,1:99:3539:1:36:0,-26.5047,-315.12	0/1:99:58,41:58:2084:41:1468:-102.614,0,-158.028	0/0:147:147,0:147:5241:0:0:0,-44.2514,-471.828	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:146:145,1:145:5148:1:36:0,-40.3521,-459.868	0/1:31:14,17:14:500:17:595:-44.5447,0,-36.0042	0/0:87:87,0:87:3100:0:0:0,-26.1896,-279.229	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.191	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/1:60:32,28:32:1148:28:996:-71.8931,0,-85.568	0/1:69:30,39:30:1072:39:1380:-103.727,0,-76.0214	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.621
chr02	16068179	.	AACATTTTT	AACACACTTTC,AACATTTTC	111453	PASS	AB=0.580274,0.408207;ABP=80.7534,104.666;AC=158,30;AF=0.840426,0.159574;AN=188;AO=4599,571;CIGAR=1M2I3M1X3M1X,8M1X;DP=5234;DPB=6266.56;DPRA=0,0.813154;EPP=9989.61,1242.92;EPPR=5.18177;GTI=5;LEN=11,1;MEANALT=1.93617,2.5;MQM=51.3209,59.9772;MQMR=60;NS=94;NUMALT=2;ODDS=0.72947;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=161237,20431;QR=36;RO=1;RPL=1,2;RPP=9980.93,1225.61;RPPR=5.18177;RPR=4598,569;RUN=1,1;SAF=1,2;SAP=9980.93,1225.61;SAR=4598,569;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,36,0:0:0:36,0:1267,0:-113.596,-10.8371,0,-113.596,-10.8371,-113.596	1/1:27:0,26,0:0:0:26,0:925,0:-82.773,-7.82678,0,-82.773,-7.82678,-82.773	1/1:66:0,64,0:0:0:64,0:2243,0:-200.669,-19.2659,0,-200.669,-19.2659,-200.669	1/1:127:0,126,0:0:0:126,0:4394,0:-394.228,-37.9298,0,-394.228,-37.9298,-394.228	1/2:24:0,16,7:0:0:16,7:555,252:-65.3097,-20.5774,-15.761,-44.7432,0,-42.636	1/2:28:0,23,4:0:0:23,4:819,144:-78.1974,-11.7591,-4.83539,-66.447,0,-65.2428	1/2:41:0,20,21:0:0:20,21:705,756:-119.165,-62.0456,-56.025,-57.4744,0,-51.1527	1/1:105:0,101,0:0:0:101,0:3552,0:-318.537,-30.404,0,-318.537,-30.404,-318.537	1/1:78:0,77,0:0:0:77,0:2706,0:-242.256,-23.1793,0,-242.256,-23.1793,-242.256	1/1:35:0,35,0:0:0:35,0:1207,0:-108.513,-10.5361,0,-108.513,-10.5361,-108.513	1/1:22:0,22,0:0:0:22,0:767,0:-69.2727,-6.62266,0,-69.2727,-6.62266,-69.2727	1/1:83:0,83,0:0:0:83,0:2909,0:-261.258,-24.9855,0,-261.258,-24.9855,-261.258	1/1:61:0,61,0:0:0:61,0:2150,0:-193.231,-18.3628,0,-193.231,-18.3628,-193.231	1/2:51:0,39,12:0:0:39,12:1375,413:-144.739,-33.8855,-22.1453,-111.198,0,-107.586	1/2:46:0,21,25:0:0:21,25:737,896:-133.278,-73.4346,-67.113,-60.1973,0,-52.6715	1/2:42:0,24,18:0:0:24,18:839,648:-120.9,-53.2333,-46.0086,-68.0204,0,-62.6018	1/1:35:0,34,0:0:0:34,0:1199,0:-107.333,-10.235,0,-107.333,-10.235,-107.333	1/2:26:1,15,10:1:36:15,10:535,352:-68.8789,-25.7106,-24.1333,-40.5253,0,-40.4527	1/1:16:0,16,0:0:0:16,0:552,0:-49.7822,-4.81648,0,-49.7822,-4.81648,-49.7822	1/2:74:0,48,25:0:0:48,25:1693,887:-209.766,-72.2879,-57.8385,-137.497,0,-129.971	1/2:66:0,30,36:0:0:30,36:1030,1288:-188.118,-105.387,-96.3556,-83.0797,0,-72.2426	1/1:102:0,101,0:0:0:101,0:3518,0:-315.17,-30.404,0,-315.17,-30.404,-315.17	1/1:57:0,56,0:0:0:56,0:1946,0:-173.832,-16.8577,0,-173.832,-16.8577,-173.832	1/1:16:0,16,0:0:0:16,0:567,0:-50.8706,-4.81648,0,-50.8706,-4.81648,-50.8706	1/1:63:0,62,0:0:0:62,0:2166,0:-193.159,-18.6639,0,-193.159,-18.6639,-193.159	1/1:125:0,124,0:0:0:124,0:4385,0:-392.332,-37.3277,0,-392.332,-37.3277,-392.332	1/1:141:0,141,0:0:0:141,0:4967,0:-442.271,-42.4452,0,-442.271,-42.4452,-442.271	1/1:22:0,22,0:0:0:22,0:782,0:-70.1317,-6.62266,0,-70.1317,-6.62266,-70.1317	1/2:126:0,87,37:0:0:87,37:3040,1328:-354.663,-108.325,-82.1352,-246.334,0,-235.196	1/2:53:0,31,20:0:0:31,20:1076,720:-145.512,-58.7813,-49.4494,-86.7576,0,-80.737	1/2:78:0,41,37:0:0:41,37:1427,1324:-224.102,-108.324,-95.9818,-116.131,0,-104.993	1/1:2:0,2,0:0:0:2,0:72,0:-6.77694,-0.60206,0,-6.77694,-0.60206,-6.77694	1/1:16:0,16,0:0:0:16,0:568,0:-51.0208,-4.81648,0,-51.0208,-4.81648,-51.0208	1/1:4:0,4,0:0:0:4,0:144,0:-13.2801,-1.20412,0,-13.2801,-1.20412,-13.2801	1/2:9:0,7,2:0:0:7,2:247,72:-26.2922,-6.23466,-4.12745,-20.4156,0,-19.8135	1/1:16:0,16,0:0:0:16,0:570,0:-51.5105,-4.81648,0,-51.5105,-4.81648,-51.5105	1/1:144:0,144,0:0:0:144,0:5061,0:-453.25,-43.3483,0,-453.25,-43.3483,-453.25	1/1:99:0,99,0:0:0:99,0:3458,0:-308.242,-29.802,0,-308.242,-29.802,-308.242	1/1:41:0,41,0:0:0:41,0:1449,0:-130.406,-12.3422,0,-130.406,-12.3422,-130.406	1/2:3:0,2,1:0:0:2,1:72,36:-9.11335,-3.29724,-2.69518,-6.17488,0,-5.87385	1/1:65:0,61,0:0:0:61,0:2153,0:-191.897,-18.3628,0,-191.897,-18.3628,-191.897	1/1:32:0,32,0:0:0:32,0:1115,0:-99.6528,-9.63296,0,-99.6528,-9.63296,-99.6528	1/2:75:0,44,31:0:0:44,31:1558,1107:-215.407,-90.5996,-77.3543,-125.161,0,-115.829	1/2:50:0,28,21:0:0:28,21:978,752:-140.733,-61.349,-52.9201,-79.4023,0,-73.0806	1/2:45:0,20,24:0:0:20,24:706,841:-125.828,-68.4222,-62.4016,-57.3982,0,-50.1735	1/1:98:0,96,1:0:0:96,1:3361,36:-300.311,-28.8989,0,-297.373,-25.9264,-297.072	1/2:36:0,27,9:0:0:27,9:950,324:-102.775,-26.7966,-18.6688,-76.3344,0,-73.6252	1/1:107:0,106,0:0:0:106,0:3725,0:-334.813,-31.9092,0,-334.813,-31.9092,-334.813	1/1:66:0,66,0:0:0:66,0:2315,0:-208.106,-19.868,0,-208.106,-19.868,-208.106	1/1:51:0,50,0:0:0:50,0:1754,0:-157.485,-15.0515,0,-157.485,-15.0515,-157.485	1/1:43:0,43,0:0:0:43,0:1516,0:-136.422,-12.9443,0,-136.422,-12.9443,-136.422	1/2:7:0,6,1:0:0:6,1:211,36:-20.454,-3.29724,-1.49106,-17.5153,0,-17.2143	1/1:55:0,54,0:0:0:54,0:1915,0:-171.799,-16.2556,0,-171.799,-16.2556,-171.799	1/1:39:0,39,0:0:0:39,0:1357,0:-121.751,-11.7402,0,-121.751,-11.7402,-121.751	1/2:4:0,1,3:0:0:1,3:36,108:-12.1011,-9.17208,-8.87105,-3.2882,0,-2.38511	1/2:59:0,29,28:0:0:29,28:1010,1004:-163.102,-81.8962,-73.1663,-81.2067,0,-72.7779	1/1:16:0,16,0:0:0:16,0:562,0:-50.842,-4.81648,0,-50.842,-4.81648,-50.842	1/2:5:0,3,2:0:0:3,2:107,72:-1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chr02	16117484	.	T	C	20357.6	PASS	AB=0.478814;ABP=13.1316;AC=31;AF=0.164894;AN=188;AO=1259;CIGAR=1X;DP=10047;DPB=10047;DPRA=0.759068;EPP=2736.89;EPPR=19016.5;GTI=2;LEN=1;MEANALT=1.07317;MQM=59.9706;MQMR=59.9859;NS=94;NUMALT=1;ODDS=2.34845;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45013;QR=314477;RO=8784;RPL=0;RPP=2736.89;RPPR=19025.1;RPR=1259;RUN=1;SAF=1259;SAP=2736.89;SAR=0;SRF=8783;SRP=19068.5;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:144:144,0:144:5147:0:0:0,-43.3483,-463.372	0/0:160:160,0:160:5699:0:0:0,-48.1648,-513.026	0/0:341:341,0:341:12209:0:0:0,-102.651,-1098.65	0/1:103:54,49:54:1944:49:1752:-126.958,0,-144.23	0/1:47:28,19:28:1000:19:684:-47.7419,0,-76.167	0/1:84:48,36:48:1720:36:1273:-89.5844,0,-129.799	0/0:139:139,0:139:4963:0:0:0,-41.8432,-446.82	0/0:146:146,0:146:5161:0:0:0,-43.9504,-464.631	0/0:132:132,0:132:4731:0:0:0,-39.736,-425.947	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:45:44,1:44:1576:1:36:0,-9.94807,-138.525	0/1:35:13,22:13:468:22:780:-59.987,0,-31.9236	0/1:64:28,36:28:1008:36:1278:-96.042,0,-71.7704	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4958	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:52:29,23:29:1044:23:818:-58.2883,0,-78.6212	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:278:120,158:120:4287:158:5673:-426.995,0,-302.321	0/1:148:71,77:71:2552:77:2751:-203.279,0,-185.378	0/0:148:148,0:148:5303:0:0:0,-44.5524,-477.403	0/0:144:144,0:144:5134:0:0:0,-43.3483,-462.158	0/0:94:93,1:93:3336:1:36:0,-24.6985,-296.859	0/0:116:116,0:116:4151:0:0:0,-34.9195,-373.773	0/0:397:397,0:397:14225:0:0:0,-119.509,-1280.01	0/0:220:220,0:220:7865:0:0:0,-66.2266,-707.877	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:208:99,108:99:3564:108:3855:-284.472,0,-258.293	0/1:66:38,28:38:1360:28:1002:-70.6274,0,-102.833	0/1:107:51,56:51:1828:56:2000:-148.064,0,-132.591	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.882	0/0:361:360,0:360:12901:0:0:0,-108.371,-1160.54	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:7:1,6:1:36:6:216:-17.677,0,-1.49106	0/0:161:161,0:161:5784:0:0:0,-48.4658,-520.672	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:170:95,74:95:3400:74:2656:-188.039,0,-254.981	0/1:42:17,25:17:608:25:884:-67.2345,0,-42.4088	0/1:58:35,23:35:1252:23:828:-57.3844,0,-95.5116	0/0:108:108,0:108:3865:0:0:0,-32.5112,-348.043	0/1:147:82,65:82:2940:65:2317:-164.537,0,-220.582	0/0:187:183,4:183:6544:4:140:0,-43.348,-576.096	0/0:206:206,0:206:7384:0:0:0,-62.0122,-664.606	0/0:152:152,0:152:5441:0:0:0,-45.7566,-489.817	0/0:281:281,0:281:10074:0:0:0,-84.5894,-906.576	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:144:143,1:143:5095:1:36:0,-39.75,-455.095	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:109:66,43:66:2364:43:1534:-105.541,0,-179.579	0/0:49:47,2:47:1688:2:72:0,-7.91375,-145.37	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:17:11,6:11:396:6:212:-14.3073,0,-30.8652	0/0:59:58,1:58:2088:1:36:0,-14.1625,-184.592	0/0:119:118,1:118:4232:1:36:0,-32.2243,-377.461	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:251:251,0:251:8992:0:0:0,-75.5585,-809.256	0/1:130:73,57:73:2624:57:2048:-145.458,0,-197.273	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:130:130,0:130:4660:0:0:0,-39.1339,-419.561	0/1:234:136,98:136:4871:98:3512:-245.849,0,-368.101	0/0:194:190,3:190:6819:3:104:0,-48.6401,-604.108	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:146:146,0:146:5240:0:0:0,-43.9504,-471.736	0/1:76:40,36:40:1428:36:1280:-92.6244,0,-105.939	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/0:151:150,1:150:5363:1:36:0,-41.8573,-479.014	0/1:92:46,46:46:1652:46:1652:-121.274,0,-121.274	0/0:168:168,0:168:5985:0:0:0,-50.573,-538.755	0/0:178:178,0:178:6379:0:0:0,-53.5833,-574.198	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/0:121:121,0:121:4327:0:0:0,-36.4246,-389.602	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/0:150:150,0:150:5384:0:0:0,-45.1545,-484.69	0/1:128:69,59:69:2468:59:2116:-152.177,0,-183.842	0/0:342:342,0:342:12226:0:0:0,-102.952,-1100.18	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:135:135,0:135:4844:0:0:0,-40.639,-436.11	0/1:37:24,13:24:864:13:464:-30.9594,0,-66.9445	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:41:23,18:23:824:18:640:-45.5871,0,-62.1411	0/1:53:14,39:14:504:39:1396:-109.985,0,-29.7435	0/0:176:176,0:176:6260:0:0:0,-52.9813,-563.491	0/0:79:78,1:78:2787:1:36:0,-20.1831,-247.472
chr02	16164074	.	A	G	137761	PASS	AB=0.821012;ABP=233.043;AC=176;AF=0.956522;AN=184;AO=6037;CIGAR=1X;DP=6112;DPB=6112;DPRA=0;EPP=13112.2;EPPR=159.356;GTI=6;LEN=1;MEANALT=1.03261;MQM=59.967;MQMR=60;NS=92;NUMALT=1;ODDS=2.3433;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215321;QR=2576;RO=72;RPL=6037;RPP=13112.2;RPPR=159.356;RPR=0;RUN=1;SAF=0;SAP=13112.2;SAR=6037;SRF=0;SRP=159.356;SRR=72;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1521:-137.182,-12.9443,0	1/1:101:0,100:0:0:100:3588:-322.766,-30.103,0	1/1:60:0,60:0:0:60:2136:-192.505,-18.0618,0	1/1:236:0,236:0:0:236:8417:-757.534,-71.0431,0	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:170:0,170:0:0:170:6063:-545.776,-51.1751,0	1/1:83:0,83:0:0:83:2952:-265.915,-24.9855,0	1/1:104:0,104:0:0:104:3700:-333.204,-31.3071,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:58:0,58:0:0:58:2064:-186.031,-17.4597,0	1/1:70:0,70:0:0:70:2495:-224.803,-21.0721,0	1/1:39:3,36:3:108:36:1281:-105.518,-1.665,0	0/1:20:2,18:2:72:18:644:-52.27,0,-0.816122	1/1:27:2,25:2:72:25:900:-74.4843,-1.29109,0	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	1/1:36:2,34:2:72:34:1220:-103.27,-4.00036,0	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:56:1,55:1:36:55:1964:-173.437,-13.2594,0	0/1:46:9,37:9:316:37:1328:-105.975,0,-14.9315	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:99:0,99:0:0:99:3530:-317.911,-29.802,0	1/1:81:0,81:0:0:81:2872:-258.719,-24.3834,0	1/1:348:0,348:0:0:348:12413:-1116.38,-104.758,0	1/1:250:0,250:0:0:250:8902:-801.171,-75.2575,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:75:1,74:1:36:74:2652:-235.328,-18.979,0	1/1:37:0,37:0:0:37:1320:-118.324,-11.1381,0	1/1:66:0,66:0:0:66:2356:-212.293,-19.868,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:136:0,136:0:0:136:4861:-437.643,-40.9401,0	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	1/1:30:0,30:0:0:30:1068:-96.4315,-9.0309,0	.:.:.:.:.:.:.:.	1/1:165:0,165:0:0:165:5861:-527.598,-49.67,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:54:7,47:7:252:47:1684:-135.591,0,-6.77334	1/1:32:2,30:2:68:30:1072:-90.3347,-3.17525,0	1/1:35:1,34:1:36:34:1224:-106.869,-6.93778,0	1/1:66:0,66:0:0:66:2352:-211.939,-19.868,0	1/1:42:3,39:3:108:39:1400:-116.224,-2.56809,0	1/1:153:0,153:0:0:153:5438:-489.554,-46.0576,0	1/1:106:0,106:0:0:106:3796:-341.838,-31.9092,0	1/1:194:0,194:0:0:194:6936:-624.307,-58.3998,0	1/1:143:1,142:1:36:142:5088:-454.465,-39.449,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:28:0,28:0:0:28:996:-89.7971,-8.42884,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:62:3,59:3:108:59:2096:-178.835,-8.58869,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:73:0,73:0:0:73:2600:-234.249,-21.9752,0	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:61:0,61:0:0:61:2169:-195.476,-18.3628,0	1/1:90:4,86:4:144:86:3064:-262.676,-13.7791,0	1/1:49:0,48:0:0:48:1716:-154.366,-14.4494,0	1/1:54:0,54:0:0:54:1911:-172.265,-16.2556,0	1/1:83:2,81:2:68:81:2900:-254.778,-18.5278,0	1/1:35:0,35:0:0:35:1240:-111.904,-10.5361,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:49:0,48:0:0:48:1720:-154.726,-14.4494,0	0/1:33:6,27:6:216:27:968:-77.5034,0,-9.85652	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:65:0,65:0:0:65:2325:-209.509,-19.567,0	0/1:30:9,21:9:324:21:752:-58.9754,0,-20.475	1/1:116:0,116:0:0:116:4111:-370.177,-34.9195,0	1/1:153:0,153:0:0:153:5472:-492.606,-46.0576,0	1/1:158:0,158:0:0:158:5624:-504.916,-47.5627,0	1/1:116:0,116:0:0:116:4127:-371.616,-34.9195,0	1/1:14:0,14:0:0:14:497:-45.0649,-4.21442,0	1/1:101:0,101:0:0:101:3571:-321.599,-30.404,0	1/1:48:1,47:1:36:47:1668:-146.809,-10.8512,0	1/1:147:0,147:0:0:147:5258:-473.357,-44.2514,0	1/1:73:0,73:0:0:73:2599:-234.159,-21.9752,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	0/1:21:2,19:2:72:19:684:-55.5687,0,-0.515092	1/1:63:0,63:0:0:63:2231:-201.054,-18.9649,0	1/1:51:0,51:0:0:51:1799:-162.191,-15.3525,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:29:8,21:8:288:21:741:-58.2822,0,-17.5375	0/1:24:3,21:3:108:21:752:-60.7815,0,-2.85045	1/1:5:0,5:0:0:5:161:-14.8066,-1.50515,0	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0
chr02	16204836	.	C	T	20933.1	PASS	AB=0.513577;ABP=11.855;AC=32;AF=0.170213;AN=188;AO=2887;CIGAR=1X;DP=17676;DPB=17676;DPRA=1.14015;EPP=6263.37;EPPR=32073.5;GTI=1;LEN=1;MEANALT=1.04762;MQM=25.709;MQMR=42.8496;NS=94;NUMALT=1;ODDS=2.68901;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103444;QR=524929;RO=14781;RPL=2;RPP=6254.69;RPPR=102.517;RPR=2885;RUN=1;SAF=1;SAP=6263.37;SAR=2886;SRF=6976;SRP=103.973;SRR=7805;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:83:83,0:83:2943:0:0:0,-24.9855,-248.479	0/0:292:292,0:292:10412:0:0:0,-87.9008,-730.037	0/0:317:316,1:316:11286:1:36:0,-93.053,-927.589	0/0:363:362,0:362:12898:0:0:0,-108.973,-1047.42	0/1:106:67,39:67:2395:39:1404:-52.2617,0,-156.054	0/1:124:58,66:58:2072:66:2372:-94.9068,0,-113.164	0/1:216:124,92:124:4356:92:3300:-147.989,0,-279.747	0/0:403:403,0:403:14310:0:0:0,-121.315,-1029.68	0/0:182:181,0:181:6417:0:0:0,-54.4864,-531.485	0/0:220:220,0:220:7833:0:0:0,-66.2266,-613.171	0/0:128:128,0:128:4581:0:0:0,-38.5318,-369.628	0/0:213:213,0:213:7507:0:0:0,-64.1194,-590.234	0/0:154:154,0:154:5428:0:0:0,-46.3586,-420.473	0/1:227:95,132:95:3363:132:4728:-224.66,0,-194.971	0/1:177:105,72:105:3721:72:2584:-117.65,0,-251.434	0/1:149:84,65:84:2956:65:2332:-99.4668,0,-194.468	0/0:162:162,0:162:5710:0:0:0,-48.7669,-408.838	0/1:159:64,95:64:2258:95:3384:-141.009,0,-116.973	0/0:95:95,0:95:3391:0:0:0,-28.5978,-256.846	0/1:306:178,128:178:6330:128:4596:-205.375,0,-426.996	0/1:348:181,167:181:6427:167:5996:-257.319,0,-389.779	0/0:262:262,0:262:9312:0:0:0,-78.8699,-801.208	0/0:162:162,0:162:5746:0:0:0,-48.7669,-502.989	0/0:154:147,7:147:5229:7:252:0,-31.2622,-404.09	0/0:158:158,0:158:5641:0:0:0,-47.5627,-453.703	0/0:398:390,5:390:13884:5:180:0,-106.748,-1121.87	0/0:415:414,1:414:14714:1:36:0,-122.369,-1172.4	0/0:92:92,0:92:3265:0:0:0,-27.6948,-253.487	0/1:341:201,140:201:7195:140:5024:-243.971,0,-497.634	0/1:260:83,177:83:2940:177:6349:-307.982,0,-130.904	0/1:192:115,77:115:4095:77:2755:-122.621,0,-274.667	0/0:8:8,0:8:288:0:0:0,-2.40824,-22.3342	0/0:39:39,0:39:1388:0:0:0,-11.7402,-117.243	0/0:14:14,0:14:485:0:0:0,-4.21442,-37.4334	1/1:16:0,16:0:0:16:572:-31.9486,-4.81648,0	0/0:44:44,0:44:1584:0:0:0,-13.2453,-129.67	0/0:427:427,0:427:15123:0:0:0,-128.54,-1245.61	0/0:235:234,1:234:8308:1:36:0,-68.4632,-639.27	0/0:141:141,0:141:5005:0:0:0,-42.4452,-366.979	0/1:5:2,3:2:68:3:108:-5.22521,0,-4.13359	0/0:204:204,0:204:7176:0:0:0,-61.4101,-565.594	0/0:82:82,0:82:2932:0:0:0,-24.6845,-235.042	0/1:285:131,154:131:4651:154:5520:-255.881,0,-278.08	0/1:150:63,87:63:2235:87:3104:-162.348,0,-140.618	0/1:109:61,48:61:2153:48:1724:-80.3742,0,-142.389	0/0:176:176,0:176:6283:0:0:0,-52.9813,-516.555	0/1:227:104,122:104:3724:122:4369:-175.172,0,-214.02	0/0:287:285,2:285:10083:2:72:0,-81.7085,-795.146	0/0:133:133,0:133:4737:0:0:0,-40.037,-387.013	0/0:219:219,0:219:7778:0:0:0,-65.9256,-597.799	0/0:335:335,0:335:11927:0:0:0,-100.845,-995.087	0/1:22:9,13:9:320:13:468:-24.2717,0,-19.8332	0/0:274:274,0:274:9739:0:0:0,-82.4822,-745.809	0/0:94:94,0:94:3317:0:0:0,-28.2968,-283.256	0/1:27:13,14:13:468:14:504:-18.7155,0,-26.3544	0/1:254:129,125:129:4560:125:4484:-200.902,0,-276.1	0/0:50:50,0:50:1770:0:0:0,-15.0515,-144.697	0/1:20:9,11:9:311:11:392:-18.3059,0,-21.2604	0/1:21:7,14:7:252:14:504:-27.4159,0,-13.8505	0/0:176:176,0:176:6282:0:0:0,-52.9813,-506.475	0/0:223:219,4:219:7750:4:144:0,-57.753,-612.507	0/0:12:12,0:12:405:0:0:0,-3.61236,-34.8773	0/0:290:290,0:290:10347:0:0:0,-87.2987,-832.759	0/1:458:182,276:182:6444:276:9908:-500.421,0,-376.429	0/0:127:118,9:118:4214:9:324:0,-18.7792,-303.411	0/0:172:171,0:171:6055:0:0:0,-51.4761,-495.152	0/1:271:142,129:142:5065:129:4628:-217.88,0,-326.167	0/0:241:240,0:240:8513:0:0:0,-72.2472,-690.584	0/0:85:85,0:85:3005:0:0:0,-25.5875,-241.396	0/0:158:158,0:158:5615:0:0:0,-47.5627,-396.594	0/1:208:92,116:92:3240:116:4126:-225.847,0,-192.782	0/0:27:27,0:27:963:0:0:0,-8.12781,-80.5483	0/0:190:190,0:190:6744:0:0:0,-57.1957,-548.163	0/1:160:70,90:70:2462:90:3240:-137.775,0,-136.474	0/0:503:503,0:503:17821:0:0:0,-151.418,-1363.78	0/0:271:271,0:271:9671:0:0:0,-81.5791,-785.384	0/0:272:272,0:272:9681:0:0:0,-81.8802,-699.474	0/0:188:186,2:186:6635:2:72:0,-52.6291,-488.306	0/0:29:29,0:29:1029:0:0:0,-8.72987,-80.7069	0/0:219:219,0:219:7787:0:0:0,-65.9256,-607.5	0/1:247:112,135:112:3907:135:4836:-197.186,0,-224.424	0/0:319:318,1:318:11371:1:36:0,-93.5617,-883.092	0/0:157:157,0:157:5570:0:0:0,-47.2617,-435.854	0/0:175:175,0:175:6217:0:0:0,-52.6802,-512.168	0/0:141:141,0:141:4995:0:0:0,-42.4452,-388.713	0/0:271:270,1:270:9562:1:36:0,-78.8429,-770.046	0/1:74:38,36:38:1351:36:1284:-50.628,0,-76.6039	0/0:158:158,0:158:5606:0:0:0,-47.5627,-436.058	0/0:160:160,0:160:5672:0:0:0,-48.1648,-436.457	0/0:135:135,0:135:4801:0:0:0,-40.639,-375.487	0/1:225:103,122:103:3639:122:4355:-200.713,0,-217.681	0/1:156:64,92:64:2274:92:3270:-167.705,0,-140.674	0/0:175:175,0:175:6156:0:0:0,-52.6802,-504.988	0/0:247:247,0:247:8800:0:0:0,-74.3544,-730.225
chr02	16204872	.	C	A	3784.53	PASS	AB=0.33248;ABP=1050.65;AC=31;AF=0.164894;AN=188;AO=1457;CIGAR=1X;DP=10840;DPB=10840;DPRA=1.53075;EPP=3166.85;EPPR=20356.2;GTI=7;LEN=1;MEANALT=1.12195;MQM=23.6047;MQMR=28.0373;NS=94;NUMALT=1;ODDS=0.0259388;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52196;QR=334845;RO=9373;RPL=1457;RPP=3166.85;RPPR=20356.2;RPR=0;RUN=1;SAF=0;SAP=3166.85;SAR=1457;SRF=0;SRP=20356.2;SRR=9373;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:680:0:0:0,-5.71957,-43.3056	0/0:228:228,0:228:8149:0:0:0,-68.6348,-519.816	0/0:97:97,0:97:3464:0:0:0,-29.1999,-220.633	0/0:176:176,0:176:6296:0:0:0,-52.9813,-451.829	0/1:76:53,23:53:1904:23:828:-24.5221,0,-104.482	0/1:108:78,30:78:2796:30:1080:-23.6828,0,-140.609	0/1:168:120,48:120:4292:48:1720:-56.6853,0,-250.704	0/0:286:285,0:285:10157:0:0:0,-85.7935,-650.648	0/0:47:47,0:47:1680:0:0:0,-14.1484,-106.529	0/0:144:144,0:144:5124:0:0:0,-43.3483,-369.926	0/0:67:67,0:67:2408:0:0:0,-20.169,-174.151	0/0:93:93,0:93:3340:0:0:0,-27.9958,-212.889	0/0:77:76,1:76:2732:1:36:0,-21.0927,-172.403	0/1:183:121,62:121:4331:62:2224:-73.2081,0,-231.067	0/1:115:81,33:81:2908:33:1188:-38.2604,0,-168.741	0/1:102:68,34:68:2428:34:1224:-39.2561,0,-131.026	0/0:122:122,0:122:4346:0:0:0,-36.7257,-279.276	0/1:136:85,51:85:3023:51:1832:-54.3278,0,-145.679	0/0:54:54,0:54:1944:0:0:0,-16.2556,-124.894	0/1:208:135,73:135:4840:73:2620:-98.9478,0,-276.72	0/1:277:186,90:186:6620:90:3216:-101.004,0,-357.826	0/0:74:74,0:74:2640:0:0:0,-22.2762,-199.182	0/0:23:21,0:21:756:0:0:0,-6.32163,-54.2066	0/0:75:69,6:69:2476:6:216:0,-10.2197,-156.063	0/0:71:71,0:71:2519:0:0:0,-21.3731,-172.251	0/0:246:242,4:242:8636:4:144:0,-64.2536,-643.087	0/0:202:202,0:202:7216:0:0:0,-60.8081,-491.533	0/0:57:57,0:57:2036:0:0:0,-17.1587,-139.753	0/1:233:157,76:157:5593:76:2724:-111.692,0,-343.8	0/1:248:173,75:173:6171:75:2692:-78.9925,0,-328.27	0/1:131:98,33:98:3504:33:1172:-33.2346,0,-206.925	0/0:5:5,0:5:180:0:0:0,-1.50515,-12.5865	0/0:11:11,0:11:396:0:0:0,-3.31133,-26.7945	0/0:6:6,0:6:216:0:0:0,-1.80618,-13.9031	0/1:16:8,8:8:280:8:284:-10.0482,0,-12.4424	0/0:14:14,0:14:492:0:0:0,-4.21442,-31.9387	0/0:231:231,0:231:8284:0:0:0,-69.5379,-624.447	0/0:151:150,1:150:5333:1:36:0,-43.1767,-361.213	0/0:91:90,0:90:3228:0:0:0,-27.0927,-206.225	0/1:4:3,1:3:108:1:36:-1.07475,0,-5.95309	0/0:114:114,0:114:4057:0:0:0,-34.3174,-277.799	0/0:40:40,0:40:1431:0:0:0,-12.0412,-98.2992	0/1:219:146,73:146:5211:73:2611:-83.5902,0,-279.091	0/1:109:65,44:65:2340:44:1563:-64.1564,0,-130.14	0/1:82:60,21:60:2152:21:747:-21.1771,0,-127.216	0/0:93:93,0:93:3328:0:0:0,-27.9958,-249.922	0/1:178:109,69:109:3872:69:2476:-75.4637,0,-183.67	0/0:173:171,2:171:6125:2:72:0,-47.3911,-434.212	0/0:62:62,0:62:2220:0:0:0,-18.6639,-159.694	0/0:165:165,0:165:5893:0:0:0,-49.6699,-422.421	0/0:160:160,0:160:5697:0:0:0,-48.1648,-431.946	0/1:17:12,5:12:432:5:176:-6.01523,0,-25.3123	0/0:141:141,0:141:5035:0:0:0,-42.4452,-321.24	0/0:31:31,0:31:1108:0:0:0,-9.33193,-83.3144	0/1:22:11,11:11:396:11:396:-14.2432,0,-17.592	0/1:196:140,56:140:5008:56:2008:-55.8531,0,-272.837	0/0:22:22,0:22:783:0:0:0,-6.62266,-56.1894	0/1:12:8,4:8:288:4:144:-6.18746,0,-13.3981	0/1:21:11,10:11:388:10:356:-17.2514,0,-21.6	0/0:78:78,0:78:2768:0:0:0,-23.4803,-189.663	0/0:127:125,2:125:4463:2:72:0,-33.5437,-315.735	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.12774	0/0:194:194,0:194:6952:0:0:0,-58.3998,-524.074	0/1:386:225,161:225:8012:161:5763:-236.346,0,-446.575	0/0:82:76,6:76:2727:6:216:0,-12.1507,-173.178	0/0:85:85,0:85:3037:0:0:0,-25.5875,-218.822	0/1:200:136,63:136:4868:63:2260:-77.7021,0,-279.496	0/0:117:117,0:117:4188:0:0:0,-35.2205,-300.358	0/0:39:39,0:39:1396:0:0:0,-11.7402,-96.0248	0/0:123:123,0:123:4358:0:0:0,-37.0267,-279.837	0/1:180:125,55:125:4436:55:1976:-75.7707,0,-271.569	0/0:11:11,0:11:396:0:0:0,-3.31133,-28.8762	0/0:66:66,0:66:2356:0:0:0,-19.868,-150.372	0/1:126:86,40:86:3072:40:1432:-37.1846,0,-150.827	0/0:317:315,1:315:11280:1:36:0,-93.0745,-768.425	0/0:136:136,0:136:4876:0:0:0,-40.9401,-350.359	0/0:190:190,0:190:6800:0:0:0,-57.1957,-435.305	0/0:124:122,2:122:4368:2:72:0,-33.3632,-274.504	0/0:12:12,0:12:432:0:0:0,-3.61236,-27.8899	0/0:127:127,0:127:4532:0:0:0,-38.2308,-309.973	0/1:193:130,63:130:4648:63:2248:-59.4709,0,-226.697	0/0:207:204,3:204:7303:3:108:0,-55.4059,-510.342	0/0:108:108,0:108:3855:0:0:0,-32.5112,-278.194	0/0:80:80,0:80:2860:0:0:0,-24.0824,-208.673	0/0:95:95,0:95:3363:0:0:0,-28.5978,-244.762	0/0:142:142,0:142:5096:0:0:0,-42.7463,-365.895	0/1:62:48,14:48:1708:14:504:-7.48188,0,-87.7292	0/0:77:77,0:77:2735:0:0:0,-23.1793,-175.02	0/0:85:85,0:85:3027:0:0:0,-25.5875,-193.358	0/0:76:75,0:75:2671:0:0:0,-22.5772,-183.344	0/1:169:103,66:103:3680:66:2364:-84.4636,0,-193.736	0/1:121:84,37:84:3004:37:1324:-44.356,0,-172.879	0/0:76:76,0:76:2709:0:0:0,-22.8783,-193.039	0/0:97:97,0:97:3471:0:0:0,-29.1999,-246.873
chr02	16298218	.	GCCAA	CCCAA	129540	PASS	AB=0.501322;ABP=3.03901;AC=158;AF=0.840426;AN=188;AO=5602;CIGAR=1X4M;DP=6584;DPB=6593.6;DPRA=0;EPP=10283.8;EPPR=1945.63;GTI=1;LEN=1;MEANALT=1.3617;MQM=47.7722;MQMR=59.9363;NS=94;NUMALT=1;ODDS=1.54326;PAIRED=0;PAIREDR=0;PAO=21.5;PQA=498;PQR=0;PRO=0;QA=199931;QR=33218;RO=942;RPL=226;RPP=10283.8;RPPR=1945.63;RPR=5376;RUN=1;SAF=5602;SAP=12167.6;SAR=0;SRF=942;SRP=2048.54;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:68:0,67:0:0:67:2391:-213.533,-20.169,0	1/1:43:0,43:0:0:43:1536:-137.811,-12.9443,0	1/1:119:0,118:0:0:118:4229:-378.049,-35.5215,0	1/1:118:0,117:0:0:117:4172:-371.353,-35.2205,0	0/1:36:15,21:15:536:21:746:-55.6923,0,-37.7381	0/1:33:14,19:14:504:19:684:-51.6815,0,-35.7641	0/1:94:51,43:51:1793:43:1545:-109.468,0,-133.344	1/1:87:1,86:1:36:86:3078:-271.826,-22.5913,0	1/1:95:0,95:0:0:95:3400:-303.098,-28.5979,0	1/1:85:0,85:0:0:85:3041:-271.384,-25.5876,0	1/1:73:0,73:0:0:73:2602:-231.013,-21.9752,0	1/1:125:0,124:0:0:124:4424:-394.837,-37.3277,0	1/1:107:0,106:0:0:106:3781:-336.854,-31.9092,0	0/1:60:25,35:25:877:35:1236:-91.97,0,-61.1844	0/1:80:50,30:50:1780:30:1078:-72.1501,0,-136.4	0/1:57:27,30:27:941:30:1080:-79.5296,0,-67.8435	1/1:29:0,29:0:0:29:1044:-93.7579,-8.72987,0	0/1:33:24,9:24:844:9:324:-19.4197,0,-66.345	1/1:51:0,51:0:0:51:1835:-164.233,-15.3525,0	0/1:77:47,30:47:1657:30:1055:-70.74,0,-126.237	0/1:94:40,53:40:1405:53:1887:-140.353,0,-98.4436	1/1:52:0,49:0:0:49:1756:-156.258,-14.7505,0	1/1:96:0,95:0:0:95:3369:-299.456,-28.5979,0	1/1:30:0,30:0:0:30:1074:-95.8379,-9.0309,0	1/1:72:0,71:0:0:71:2532:-226.415,-21.3731,0	1/1:152:0,152:0:0:152:5432:-483.855,-45.7566,0	1/1:196:0,195:0:0:195:6965:-621.413,-58.7009,0	1/1:38:0,38:0:0:38:1360:-121.906,-11.4391,0	0/1:151:74,75:74:2602:75:2676:-193.582,0,-189.285	0/1:101:55,46:55:1941:46:1635:-116.12,0,-144.561	0/1:62:27,35:27:952:35:1231:-91.2277,0,-67.2152	1/1:5:0,5:0:0:5:180:-16.4607,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.0948,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	0/1:13:3,10:3:101:10:359:-28.3078,0,-5.50998	1/1:13:0,13:0:0:13:468:-42.2088,-3.91339,0	1/1:228:0,228:0:0:228:8118:-719.916,-68.6348,0	1/1:62:0,61:0:0:61:2182:-194.432,-18.3628,0	1/1:46:0,45:0:0:45:1613:-143.648,-13.5464,0	0/1:5:4,1:4:144:1:36:-2.06828,0,-11.8085	1/1:102:0,100:0:0:100:3563:-317.813,-30.103,0	1/1:30:0,30:0:0:30:1071:-95.8212,-9.0309,0	0/1:111:48,63:48:1684:63:2253:-167.844,0,-118.428	0/1:65:34,31:34:1206:31:1114:-79.9657,0,-89.2791	0/1:56:24,32:24:847:32:1126:-83.9049,0,-59.6922	1/1:90:0,90:0:0:90:3206:-285.753,-27.0927,0	0/1:82:46,35:46:1630:35:1242:-86.6228,0,-122.284	1/1:133:0,129:0:0:129:4607:-410.472,-38.8329,0	1/1:55:0,54:0:0:54:1938:-172.55,-16.2556,0	1/1:81:0,80:0:0:80:2833:-252.955,-24.0824,0	1/1:53:0,53:0:0:53:1884:-167.325,-15.9546,0	0/1:10:3,7:3:107:7:252:-19.8234,0,-6.97187	1/1:102:0,101:0:0:101:3588:-320.132,-30.404,0	1/1:21:0,21:0:0:21:754:-67.3609,-6.32163,0	0/1:4:1,3:1:36:3:108:-8.80527,0,-2.39415	0/1:86:35,51:35:1221:51:1815:-135.935,0,-84.3035	1/1:43:0,42:0:0:42:1496:-133.656,-12.6433,0	1/1:3:0,3:0:0:3:108:-10.0458,-0.90309,0	0/1:20:4,16:4:140:16:564:-44.6642,0,-6.92419	1/1:57:0,57:0:0:57:2042:-182.373,-17.1587,0	1/1:76:0,75:0:0:75:2669:-238.104,-22.5773,0	1/1:1:0,1:0:0:1:36:-3.56681,-0.30103,0	1/1:77:0,75:0:0:75:2670:-237.855,-22.5773,0	0/1:74:24,49:24:848:49:1743:-133.122,0,-54.3049	1/1:49:0,49:0:0:49:1760:-157.453,-14.7505,0	1/1:25:0,25:0:0:25:882:-78.7284,-7.52575,0	0/1:77:37,40:37:1297:40:1439:-105.307,0,-93.8516	1/1:83:0,83:0:0:83:2938:-262.039,-24.9855,0	1/1:54:0,54:0:0:54:1937:-172.662,-16.2556,0	1/1:38:0,38:0:0:38:1358:-121.371,-11.4391,0	0/1:49:18,31:18:636:31:1114:-84.7157,0,-42.8176	1/1:22:0,22:0:0:22:786:-70.2949,-6.62266,0	1/1:91:0,90:0:0:90:3221:-287.555,-27.0927,0	0/1:89:49,40:49:1709:40:1430:-101,0,-127.291	1/1:85:0,85:0:0:85:3035:-271.354,-25.5876,0	1/1:133:0,132:0:0:132:4726:-421.161,-39.736,0	1/1:73:1,72:1:35:72:2568:-225.941,-18.4766,0	1/1:58:1,56:1:35:56:2006:-175.908,-13.9798,0	1/1:7:0,6:0:0:6:216:-19.349,-1.80618,0	1/1:78:0,78:0:0:78:2787:-249.243,-23.4803,0	0/1:51:27,24:27:951:24:856:-60.6085,0,-70.5531	1/1:207:1,206:1:30:206:7341:-651.325,-59.3136,0	1/1:72:0,71:0:0:71:2537:-226.158,-21.3731,0	1/1:73:0,73:0:0:73:2608:-231.744,-21.9752,0	1/1:45:0,45:0:0:45:1588:-141.891,-13.5464,0	1/1:141:0,140:0:0:140:4988:-443.712,-42.1442,0	0/1:21:12,9:12:426:9:324:-23.0498,0,-32.356	1/1:89:0,88:0:0:88:3133:-278.781,-26.4906,0	1/1:87:0,87:0:0:87:3123:-279.457,-26.1896,0	1/1:43:0,42:0:0:42:1504:-134.311,-12.6433,0	0/1:102:60,41:60:2125:41:1471:-100.78,0,-160.756	0/1:98:59,39:59:2106:39:1392:-94.3158,0,-160.309	1/1:80:0,80:0:0:80:2832:-251.104,-24.0824,0	1/1:137:1,136:1:36:136:4871:-430.203,-37.6428,0
chr02	16298251	.	A	G	285749	PASS	AB=0.470588;ABP=31.6226;AC=158;AF=0.840426;AN=188;AO=10525;CIGAR=1X;DP=12572;DPB=12572;DPRA=0;EPP=22857.8;EPPR=4428.47;GTI=0;LEN=1;MEANALT=1.09574;MQM=53.5338;MQMR=59.8449;NS=94;NUMALT=1;ODDS=4.11254;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=368814;QR=72007;RO=2038;RPL=5286;RPP=3.46605;RPPR=49.1077;RPR=5239;RUN=1;SAF=5286;SAP=3.46605;SAR=5239;SRF=915;SRP=49.1077;SRR=1123;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:85:0,85:0:0:85:3015:-270.303,-25.5876,0	1/1:140:0,140:0:0:140:4950:-444.934,-42.1442,0	1/1:209:0,209:0:0:209:7367:-660.339,-62.9153,0	1/1:241:1,240:1:32:240:8437:-752.198,-69.3568,0	0/1:95:49,46:49:1733:46:1639:-118.177,0,-127.64	0/1:70:35,35:35:1238:35:1247:-91.1984,0,-90.6508	0/1:166:85,81:85:3008:81:2826:-203.287,0,-220.952	1/1:186:2,184:2:72:184:6424:-569.48,-49.1549,0	1/1:170:0,170:0:0:170:5938:-531.383,-51.1751,0	1/1:173:0,173:0:0:173:6080:-544.789,-52.0782,0	1/1:103:0,103:0:0:103:3552:-316.883,-31.0061,0	1/1:163:1,162:1:36:162:5665:-502.746,-45.4696,0	1/1:185:0,185:0:0:185:6403:-572.893,-55.6906,0	0/1:113:57,56:57:2016:56:1951:-140.364,0,-147.697	0/1:122:76,46:76:2706:46:1597:-106.245,0,-207.058	0/1:100:57,43:57:2011:43:1510:-105.282,0,-151.16	1/1:90:0,90:0:0:90:3147:-282.952,-27.0927,0	0/1:72:44,28:44:1562:28:970:-65.8038,0,-119.196	1/1:74:0,74:0:0:74:2598:-232.881,-22.2762,0	0/1:217:118,99:118:4158:99:3473:-245.755,0,-309.079	0/1:204:98,106:98:3468:106:3737:-272.819,0,-250.63	1/1:122:0,122:0:0:122:4291:-382.928,-36.7257,0	1/1:140:1,139:1:36:139:4900:-433.805,-38.5459,0	1/1:94:8,86:8:272:86:3058:-249.451,-3.48563,0	1/1:103:1,102:1:36:102:3603:-319.461,-27.4078,0	1/1:368:0,368:0:0:368:12966:-1161.9,-110.779,0	1/1:307:0,307:0:0:307:10835:-969.856,-92.4162,0	1/1:70:1,69:1:32:69:2421:-214.204,-17.8728,0	0/1:294:132,162:132:4664:162:5678:-419.597,0,-331.15	0/1:180:106,73:106:3789:73:2574:-176.75,0,-286.958	0/1:189:86,103:86:3051:103:3638:-269.986,0,-217.926	1/1:13:0,13:0:0:13:444:-40.1939,-3.91339,0	1/1:9:0,9:0:0:9:316:-28.6283,-2.70927,0	1/1:6:0,6:0:0:6:216:-19.7726,-1.80618,0	0/1:19:8,11:8:288:11:396:-29.7835,0,-20.5478	1/1:13:0,13:0:0:13:456:-41.2056,-3.91339,0	1/1:346:1,345:1:36:345:12021:-1067.22,-100.558,0	1/1:165:0,164:0:0:164:5675:-508.814,-49.3689,0	1/1:81:0,81:0:0:81:2798:-250.623,-24.3834,0	0/1:5:4,1:4:144:1:36:-2.06828,0,-11.8085	1/1:187:0,187:0:0:187:6563:-587.274,-56.2926,0	1/1:54:0,54:0:0:54:1877:-168.343,-16.2556,0	0/1:219:117,102:117:4148:102:3530:-250.228,0,-307.57	0/1:132:80,52:80:2822:52:1787:-120.501,0,-214.484	0/1:110:55,55:55:1943:55:1886:-136.048,0,-141.987	1/1:125:0,125:0:0:125:4450:-397.026,-37.6288,0	0/1:133:84,49:84:2979:49:1739:-115.891,0,-228.303	1/1:245:0,245:0:0:245:8594:-768.159,-73.7524,0	1/1:126:0,125:0:0:125:4403:-394.234,-37.6288,0	1/1:200:0,200:0:0:200:7059:-632.893,-60.206,0	1/1:149:0,149:0:0:149:5195:-465.109,-44.8535,0	0/1:16:5,11:5:180:11:392:-30.638,0,-11.7356	1/1:213:0,212:0:0:212:7420:-664.6,-63.8184,0	1/1:45:0,45:0:0:45:1556:-139.429,-13.5464,0	1/1:12:1,11:1:36:11:392:-31.9577,-0.0140851,0	0/1:213:109,103:109:3862:103:3606:-258.82,0,-283.642	1/1:75:0,74:0:0:74:2584:-230.345,-22.2762,0	0/1:4:2,2:2:72:2:72:-5.60271,0,-5.6326	0/1:25:6,19:6:212:19:671:-52.8045,0,-11.899	1/1:119:0,119:0:0:119:4182:-375,-35.8226,0	1/1:122:1,121:1:36:121:4235:-375.595,-33.1274,0	1/1:10:0,10:0:0:10:344:-31.2634,-3.0103,0	1/1:200:0,200:0:0:200:6971:-625.425,-60.206,0	0/1:179:85,93:85:3001:93:3289:-240.463,0,-216.383	1/1:97:1,96:1:36:96:3384:-300.159,-25.6016,0	1/1:89:0,89:0:0:89:3125:-280.911,-26.7917,0	0/1:220:113,107:113:3962:107:3757:-270.956,0,-290.048	1/1:147:0,147:0:0:147:5177:-462.852,-44.2514,0	1/1:65:0,65:0:0:65:2315:-206.597,-19.567,0	1/1:94:0,94:0:0:94:3315:-297.372,-28.2968,0	0/1:97:37,60:37:1293:60:2072:-156.68,0,-87.4688	1/1:30:0,30:0:0:30:1058:-94.6277,-9.0309,0	1/1:133:0,133:0:0:133:4676:-418.378,-40.037,0	0/1:157:86,71:86:3031:71:2513:-177.821,0,-225.735	1/1:220:0,220:0:0:220:7730:-693.612,-66.2266,0	1/1:228:0,227:0:0:227:8047:-719.404,-68.3338,0	1/1:108:1,107:1:36:107:3729:-330.236,-28.913,0	1/1:142:1,141:1:36:141:4952:-440.741,-39.148,0	1/1:19:0,19:0:0:19:662:-59.4925,-5.71957,0	1/1:162:1,161:1:36:161:5628:-501.215,-45.1686,0	0/1:104:56,48:56:1981:48:1663:-117.073,0,-147.256	1/1:349:0,349:0:0:349:12297:-1099.74,-105.059,0	1/1:148:1,147:1:36:147:5051:-448.546,-40.9542,0	1/1:108:0,108:0:0:108:3750:-334.492,-32.5112,0	1/1:135:0,135:0:0:135:4620:-414.724,-40.6391,0	1/1:262:0,262:0:0:262:9110:-814.741,-78.8699,0	0/1:47:27,20:27:951:20:677:-46.9737,0,-71.7559	1/1:140:0,140:0:0:140:4859:-434.614,-42.1442,0	1/1:128:0,128:0:0:128:4449:-398.983,-38.5318,0	1/1:66:0,66:0:0:66:2324:-208.377,-19.868,0	0/1:155:96,59:96:3363:59:2059:-137.867,0,-255.606	0/1:151:99,51:99:3459:51:1769:-111.977,0,-265.972	1/1:159:0,159:0:0:159:5591:-499.41,-47.8638,0	1/1:197:3,194:3:108:194:6810:-597.209,-49.2277,0
chr02	16298284	.	A	G	20191.7	PASS	AB=0.510248;ABP=5.14654;AC=30;AF=0.16129;AN=186;AO=1203;CIGAR=1X;DP=7270;DPB=7270;DPRA=0.999125;EPP=2580.66;EPPR=12716.7;GTI=1;LEN=1;MEANALT=1.05263;MQM=59.7573;MQMR=59.9024;NS=93;NUMALT=1;ODDS=1.52537;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42724;QR=216842;RO=6065;RPL=1199;RPP=2580.66;RPPR=12716.7;RPR=4;RUN=1;SAF=0;SAP=2615.29;SAR=1203;SRF=0;SRP=13173;SRR=6065;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:119:119,0:119:4242:0:0:0,-35.8226,-381.949	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:157:157,0:157:5631:0:0:0,-47.2617,-506.871	0/1:65:30,35:30:1076:35:1244:-92.66,0,-77.5859	0/1:46:22,24:22:788:24:864:-64.2352,0,-57.3974	0/1:78:40,38:40:1424:38:1331:-96.6087,0,-104.977	0/0:115:114,1:114:4069:1:36:0,-31.0202,-362.233	0/0:95:95,0:95:3411:0:0:0,-28.5978,-307.187	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.804	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:90:90,0:90:3215:0:0:0,-27.0927,-289.572	0/1:58:22,35:22:792:35:1252:-95.462,0,-54.0871	0/1:51:20,31:20:712:31:1104:-84.1882,0,-49.0541	0/1:49:18,31:18:648:31:1104:-84.9188,0,-43.9014	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.662	0/1:49:22,27:22:792:27:929:-69.1571,0,-56.8552	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/1:164:86,78:86:3070:78:2788:-201.79,0,-227.159	0/1:133:73,60:73:2585:60:2132:-151.841,0,-192.805	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.978	0/0:62:61,1:61:2180:1:36:0,-15.0656,-192.868	0/1:77:69,8:69:2467:8:284:-2.72404,0,-199.086	0/0:38:37,1:37:1324:1:36:0,-7.84086,-115.864	0/0:258:258,0:258:9239:0:0:0,-77.6657,-831.46	0/0:144:144,0:144:5139:0:0:0,-43.3483,-462.642	0/0:37:36,1:36:1288:1:36:0,-7.53983,-112.625	0/1:177:110,67:110:3925:67:2388:-161.405,0,-300.078	0/1:97:38,59:38:1359:59:2115:-161.414,0,-93.4004	0/1:147:85,62:85:3043:62:2221:-155.898,0,-229.848	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7449	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:154:154,0:154:5532:0:0:0,-46.3586,-497.929	0/0:139:139,0:139:4983:0:0:0,-41.8432,-448.616	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.087	.:.:.:.:.:.:.:.	0/0:102:102,0:102:3625:0:0:0,-30.7051,-326.445	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:129:54,75:54:1914:75:2646:-199.537,0,-133.703	0/1:80:28,52:28:996:52:1868:-144.317,0,-65.8725	0/1:59:29,30:29:1027:30:1060:-77.9505,0,-74.9814	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.67	0/1:63:23,40:23:815:40:1398:-107.152,0,-54.7059	0/0:138:138,0:138:4947:0:0:0,-41.5421,-445.35	0/0:88:88,0:88:3129:0:0:0,-26.4906,-281.836	0/0:137:137,0:137:4890:0:0:0,-41.2411,-440.127	0/0:107:107,0:107:3831:0:0:0,-32.2102,-344.958	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:136:136,0:136:4875:0:0:0,-40.9401,-438.856	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:139:66,73:66:2368:73:2545:-187.404,0,-171.535	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.527	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4963	0/0:163:163,0:163:5809:0:0:0,-49.0679,-522.925	0/1:129:55,74:55:1964:74:2631:-198.197,0,-138.202	0/0:62:61,1:61:2179:1:36:0,-15.0656,-192.777	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.237	0/1:158:80,78:80:2850:78:2792:-203.958,0,-209.175	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:61:61,0:61:2187:0:0:0,-18.3628,-197.095	0/1:55:32,23:32:1152:23:816:-57.2032,0,-87.4335	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:57:57,0:57:2043:0:0:0,-17.1587,-184.141	0/1:90:45,45:45:1586:45:1599:-117.107,0,-115.88	0/0:161:161,0:161:5745:0:0:0,-48.4658,-517.037	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.747	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/0:110:109,1:109:3891:1:36:0,-29.515,-346.085	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:112:110,1:110:3934:1:36:0,-30.1759,-350.653	0/1:65:31,34:31:1100:34:1212:-89.8194,0,-79.7433	0/0:176:176,0:176:6306:0:0:0,-52.9813,-567.403	0/0:91:90,1:90:3211:1:36:0,-23.7955,-285.612	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/0:107:107,0:107:3827:0:0:0,-32.2102,-344.626	0/0:138:138,0:138:4897:0:0:0,-41.5421,-440.885	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.459	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:69:28,41:28:1004:41:1438:-108.849,0,-69.9048	0/1:58:14,44:14:496:44:1567:-123.824,0,-27.5145	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.62	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926
chr02	16298368	.	G	A	10761.7	PASS	AB=0.56044;ABP=40.5458;AC=30;AF=0.159574;AN=188;AO=672;CIGAR=1X;DP=3799;DPB=3799;DPRA=1.26373;EPP=1462.24;EPPR=6780.18;GTI=0;LEN=1;MEANALT=1.02703;MQM=42.5595;MQMR=56.1418;NS=94;NUMALT=1;ODDS=1.56416;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24054;QR=111169;RO=3125;RPL=672;RPP=1462.24;RPPR=6788.86;RPR=0;RUN=1;SAF=672;SAP=1462.24;SAR=0;SRF=3124;SRP=6780.18;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8351	0/0:41:41,0:41:1447:0:0:0,-12.3422,-130.255	0/0:41:41,0:41:1454:0:0:0,-12.3422,-130.026	0/0:61:61,0:61:2176:0:0:0,-18.3628,-194.083	0/1:27:18,9:18:644:9:324:-20.8684,0,-50.1469	0/1:38:15,23:15:540:23:824:-61.0419,0,-37.3755	0/1:75:33,42:33:1184:42:1504:-107.733,0,-84.037	0/0:55:55,0:55:1950:0:0:0,-16.5566,-175.466	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.5048	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.188	0/0:23:23,0:23:819:0:0:0,-6.92369,-73.9291	0/0:22:22,0:22:756:0:0:0,-6.62266,-67.8295	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.8138	0/1:22:11,11:11:396:11:396:-28.523,0,-29.35	0/1:22:8,14:8:284:14:496:-37.0638,0,-19.043	0/1:9:3,6:3:108:6:216:-16.7394,0,-7.35302	0/0:13:13,0:13:450:0:0:0,-3.91339,-40.802	0/1:11:5,6:5:176:6:216:-15.81,0,-12.6921	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.304	0/1:66:26,40:26:928:40:1436:-103.947,0,-63.6639	0/1:62:28,34:28:996:34:1216:-88.8518,0,-71.2258	0/0:100:100,0:100:3548:0:0:0,-30.103,-318.274	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.3107	0/0:38:37,0:37:1319:0:0:0,-11.1381,-118.5	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.349	0/0:165:164,1:164:5870:1:36:0,-46.1338,-523.764	0/0:121:121,0:121:4284:0:0:0,-36.4246,-385.067	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7351	0/1:125:51,74:51:1812:74:2648:-194.842,0,-125.554	0/1:56:26,30:26:936:30:1076:-78.2086,0,-67.5579	0/1:32:13,19:13:455:19:676:-49.4168,0,-31.622	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.9154	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6208	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0679	0/1:11:4,7:4:144:7:252:-18.9628,0,-9.99268	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.0887	0/0:62:62,0:62:2206:0:0:0,-18.6639,-198.561	0/0:96:94,2:94:3344:2:72:0,-22.1802,-294.035	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.7615	0/1:9:3,6:3:108:6:216:-16.7394,0,-7.27482	0/0:53:53,0:53:1888:0:0:0,-15.9546,-169.697	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.9675	0/1:108:53,55:53:1888:55:1965:-138.054,0,-137.147	0/1:10:7,3:7:224:3:108:-6.34428,0,-17.4262	0/1:17:8,9:8:284:9:324:-23.7961,0,-20.7054	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.889	0/1:54:22,32:22:775:32:1139:-83.9245,0,-52.8361	0/0:95:94,1:94:3355:1:36:0,-25.0768,-298.28	0/0:57:56,1:56:2012:1:36:0,-13.6377,-177.562	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.111	0/0:101:101,0:101:3596:0:0:0,-30.404,-323.302	0/1:10:3,7:3:104:7:252:-19.538,0,-6.68868	0/0:68:68,0:68:2432:0:0:0,-20.47,-217.78	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3165	0/1:19:3,16:3:108:16:576:-44.4822,0,-4.34833	0/1:41:20,20:20:712:20:720:-51.609,0,-51.8235	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45543	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/1:18:10,8:10:337:8:288:-19.9557,0,-25.229	0/0:30:30,0:30:1056:0:0:0,-9.0309,-95.2496	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.072	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1306	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.047	0/1:85:41,44:41:1438:44:1580:-113.877,0,-103.902	0/0:35:33,2:33:1180:2:72:0,-3.81742,-99.6487	0/0:26:26,0:26:905:0:0:0,-7.82678,-81.6602	0/1:60:24,36:24:852:36:1287:-94.6821,0,-58.8296	0/0:108:108,0:108:3855:0:0:0,-32.5112,-346.135	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4124	0/0:36:36,0:36:1274:0:0:0,-10.8371,-113.517	0/1:59:26,33:26:923:33:1172:-85.6682,0,-65.5275	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.9217	0/0:50:50,0:50:1788:0:0:0,-15.0515,-160.268	0/1:28:14,14:14:492:14:504:-34.967,0,-36.0704	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.452	0/0:51:51,0:51:1836:0:0:0,-15.3525,-164.801	0/0:65:65,0:65:2306:0:0:0,-19.5669,-207.536	0/0:47:47,0:47:1666:0:0:0,-14.1484,-149.926	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.3446	0/0:27:26,1:26:924:1:36:0,-4.59169,-79.7899	0/1:45:15,30:15:532:30:1067:-79.6293,0,-33.266	0/0:100:100,0:100:3554:0:0:0,-30.103,-319.321	0/0:54:53,1:53:1887:1:36:0,-12.7346,-165.268	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4395	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.8806	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.1896	0/1:19:8,11:8:273:11:392:-28.9946,0,-19.1556	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.4895	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.2892	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.2287	0/1:29:16,13:16:567:13:468:-32.8942,0,-41.9877	0/1:16:5,11:5:180:11:392:-30.0716,0,-11.7277	0/0:51:51,0:51:1791:0:0:0,-15.3525,-160.764	0/0:21:21,0:21:747:0:0:0,-6.32163,-66.7411
chr02	16298694	.	G	A	174178	PASS	AB=0.502633;ABP=3.18179;AC=158;AF=0.849462;AN=186;AO=7981;CIGAR=1X;DP=9423;DPB=9423;DPRA=0;EPP=17324.8;EPPR=3125.59;GTI=0;LEN=1;MEANALT=1;MQM=59.979;MQMR=59.9723;NS=93;NUMALT=1;ODDS=3.9289;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284175;QR=51149;RO=1442;RPL=1;RPP=17324.8;RPPR=3116.93;RPR=7980;RUN=1;SAF=0;SAP=17333.5;SAR=7981;SRF=1;SRP=3125.59;SRR=1441;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	1/1:135:0,135:0:0:135:4798:-431.977,-40.6391,0	1/1:119:0,119:0:0:119:4268:-384.297,-35.8226,0	1/1:173:0,173:0:0:173:6173:-555.667,-52.0782,0	0/1:56:22,34:22:775:34:1212:-92.5286,0,-53.2135	0/1:54:24,30:24:839:30:1076:-80.8972,0,-59.5716	0/1:80:34,46:34:1216:46:1656:-125.246,0,-85.6642	1/1:156:0,156:0:0:156:5539:-498.637,-46.9607,0	1/1:91:0,91:0:0:91:3231:-291.011,-27.3937,0	1/1:98:1,97:1:36:97:3457:-307.744,-25.9027,0	1/1:55:0,55:0:0:55:1958:-176.494,-16.5567,0	1/1:63:0,63:0:0:63:2229:-200.873,-18.9649,0	1/1:55:0,55:0:0:55:1967:-177.301,-16.5567,0	0/1:95:49,46:49:1730:46:1640:-119.291,0,-127.385	0/1:75:37,38:37:1315:38:1339:-98.232,0,-96.0738	0/1:61:32,29:32:1136:29:1019:-73.6585,0,-84.1861	1/1:62:0,62:0:0:62:2211:-199.254,-18.6639,0	0/1:57:34,23:34:1189:23:820:-56.9638,0,-90.154	1/1:39:0,39:0:0:39:1377:-124.227,-11.7402,0	0/1:184:85,99:85:3004:99:3525:-262.07,0,-215.202	0/1:164:91,73:91:3251:73:2603:-185.149,0,-243.437	1/1:104:0,104:0:0:104:3690:-332.303,-31.3071,0	1/1:131:0,131:0:0:131:4635:-417.314,-39.4349,0	1/1:113:10,103:10:356:103:3686:-299.56,-1.63514,0	1/1:96:0,96:0:0:96:3398:-306.034,-28.8989,0	1/1:320:0,320:0:0:320:11431:-1028.56,-96.3296,0	1/1:179:0,179:0:0:179:6382:-574.469,-53.8844,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	0/1:254:109,145:109:3895:145:5180:-389.878,0,-274.282	0/1:123:62,61:62:2228:61:2149:-156.648,0,-163.757	0/1:102:54,48:54:1935:48:1724:-124.74,0,-143.721	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:279:0,279:0:0:279:9902:-891.123,-83.9874,0	1/1:325:0,325:0:0:325:11582:-1042.25,-97.8348,0	1/1:64:0,64:0:0:64:2275:-205.001,-19.2659,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:109:47,62:47:1671:62:2207:-166.082,0,-117.864	0/1:103:61,42:61:2157:42:1508:-105.009,0,-163.39	0/1:91:54,37:54:1921:37:1311:-90.8971,0,-145.771	1/1:81:0,81:0:0:81:2886:-259.976,-24.3834,0	0/1:168:78,90:78:2787:90:3208:-238.368,0,-200.497	1/1:170:2,168:2:72:168:6013:-534.436,-44.3384,0	1/1:119:0,119:0:0:119:4228:-380.699,-35.8226,0	1/1:175:0,175:0:0:175:6247:-562.326,-52.6803,0	1/1:156:0,156:0:0:156:5585:-502.771,-46.9607,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:103:0,103:0:0:103:3677:-331.132,-31.0061,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:12:7,5:7:239:5:180:-12.9397,0,-18.2304	0/1:136:66,70:66:2318:70:2478:-182.332,0,-167.938	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:22:10,12:10:345:12:432:-32.5985,0,-24.7582	1/1:101:0,101:0:0:101:3602:-324.386,-30.404,0	1/1:123:2,121:2:68:121:4322:-382.698,-30.569,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:300:1,299:1:36:299:10635:-953.458,-86.7107,0	0/1:274:124,150:124:4390:150:5326:-396.993,0,-312.792	1/1:59:4,55:4:140:55:1967:-164.36,-4.81619,0	1/1:120:1,119:1:36:119:4258:-379.799,-32.5253,0	0/1:168:80,88:80:2827:88:3122:-230.634,0,-204.081	1/1:79:2,77:2:72:77:2747:-240.635,-16.9446,0	1/1:20:1,19:1:36:19:671:-57.1175,-2.42233,0	1/1:97:0,97:0:0:97:3456:-311.251,-29.1999,0	0/1:96:46,50:46:1607:50:1761:-129.873,0,-116.017	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:55:0,55:0:0:55:1961:-176.764,-16.5567,0	0/1:65:44,21:44:1560:21:752:-48.4393,0,-121.122	1/1:174:0,174:0:0:174:6184:-556.657,-52.3792,0	1/1:146:0,146:0:0:146:5191:-467.33,-43.9504,0	1/1:184:1,183:1:32:183:6524:-584.042,-52.1902,0	1/1:134:0,134:0:0:134:4736:-426.398,-40.338,0	1/1:13:0,13:0:0:13:459:-41.6447,-3.91339,0	1/1:110:0,110:0:0:110:3937:-354.52,-33.1133,0	0/1:93:49,44:49:1756:44:1569:-113.504,0,-130.328	1/1:164:0,164:0:0:164:5831:-524.904,-49.3689,0	1/1:85:0,85:0:0:85:2997:-269.963,-25.5876,0	1/1:86:0,86:0:0:86:3059:-275.538,-25.8886,0	1/1:117:0,117:0:0:117:4139:-372.536,-35.2205,0	1/1:192:0,192:0:0:192:6844:-615.993,-57.7978,0	0/1:32:14,18:14:496:18:644:-48.6576,0,-35.2849	1/1:61:0,61:0:0:61:2169:-195.475,-18.3628,0	1/1:72:0,72:0:0:72:2517:-226.781,-21.6742,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:94:48,46:48:1702:46:1648:-120.312,0,-125.168	0/1:73:50,23:50:1760:23:820:-52.1473,0,-136.706	1/1:147:0,147:0:0:147:5213:-469.293,-44.2514,0	1/1:108:0,108:0:0:108:3863:-347.865,-32.5112,0
chr02	16420084	.	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chr02	16815879	.	A	G	16931.4	PASS	AB=0.495164;ABP=3.43031;AC=31;AF=0.164894;AN=188;AO=1030;CIGAR=1X;DP=7118;DPB=7118;DPRA=1.05376;EPP=2239.63;EPPR=13177.4;GTI=1;LEN=1;MEANALT=1;MQM=59.9942;MQMR=59.9916;NS=94;NUMALT=1;ODDS=0.865318;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36690;QR=215959;RO=6087;RPL=0;RPP=2239.63;RPPR=13177.4;RPR=1030;RUN=1;SAF=1030;SAP=2239.63;SAR=0;SRF=6087;SRP=13220.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.164	0/0:36:35,1:35:1225:1:36:0,-7.2388,-106.953	0/0:173:172,1:172:6072:1:36:0,-48.4799,-542.99	0/0:248:248,0:248:8816:0:0:0,-74.6554,-793.434	0/1:59:32,27:32:1136:27:959:-68.8646,0,-84.7881	0/1:20:10,10:10:356:10:360:-26.7237,0,-26.3606	0/1:47:21,26:21:756:26:924:-69.3292,0,-54.2188	0/0:76:76,0:76:2680:0:0:0,-22.8783,-241.448	0/0:102:102,0:102:3591:0:0:0,-30.7051,-323.402	0/0:55:55,0:55:1944:0:0:0,-16.5566,-175.236	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:74:74,0:74:2619:0:0:0,-22.2762,-235.959	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.789	0/1:39:17,22:17:608:22:780:-58.7829,0,-43.3119	0/1:71:42,29:42:1500:29:1032:-71.8203,0,-113.921	0/1:36:9,27:9:324:27:963:-76.1489,0,-18.6688	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:135:60,75:60:2136:75:2683:-201.075,0,-151.869	0/1:179:110,69:110:3900:69:2472:-168.849,0,-297.313	0/0:154:154,0:154:5467:0:0:0,-46.3586,-492.162	0/0:47:47,0:47:1651:0:0:0,-14.1484,-148.877	0/1:36:27,9:27:956:9:315:-17.8501,0,-75.5187	0/0:84:84,0:84:2991:0:0:0,-25.2865,-269.422	0/0:228:228,0:228:8080:0:0:0,-68.6348,-727.23	0/0:272:271,1:271:9663:1:36:0,-78.2819,-866.028	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:218:128,90:128:4556:90:3205:-223.049,0,-344.584	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.646	0/1:76:48,28:48:1686:28:992:-66.7161,0,-129.144	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8427	0/0:155:155,0:155:5532:0:0:0,-46.6596,-498.007	0/0:137:136,1:136:4823:1:36:0,-37.6428,-430.631	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:90:90,0:90:3203:0:0:0,-27.0927,-288.494	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:111:63,48:63:2209:48:1690:-118.97,0,-165.66	0/1:34:16,18:16:572:18:640:-47.6943,0,-41.5784	0/1:59:30,29:30:1056:29:1027:-74.9814,0,-77.5901	0/0:97:97,0:97:3460:0:0:0,-29.1999,-311.613	0/1:106:44,62:44:1541:62:2199:-166.264,0,-107.071	0/0:172:172,0:172:6092:0:0:0,-51.7772,-548.388	0/0:67:67,0:67:2375:0:0:0,-20.169,-214.008	0/0:111:111,0:111:3929:0:0:0,-33.4143,-353.787	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/1:13:8,5:8:279:5:180:-12.6387,0,-21.5341	0/0:116:116,0:116:4100:0:0:0,-34.9195,-369.188	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:154:75,79:75:2663:79:2836:-209.119,0,-193.558	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.534	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:181:181,0:181:6422:0:0:0,-54.4864,-578.071	0/1:124:68,56:68:2424:56:1984:-141.504,0,-181.089	0/0:51:50,1:50:1749:1:36:0,-11.7543,-154.094	0/0:123:123,0:123:4336:0:0:0,-37.0267,-390.42	0/1:172:78,94:78:2788:94:3356:-250.48,0,-199.384	0/0:135:134,0:134:4755:0:0:0,-40.338,-427.752	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:52:52,0:52:1837:0:0:0,-15.6536,-165.609	0/1:34:9,25:9:308:25:896:-70.7253,0,-17.8168	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:85:85,0:85:3032:0:0:0,-25.5875,-273.111	0/1:69:31,38:31:1092:38:1356:-101.569,0,-77.8185	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.367	0/0:158:158,0:158:5533:0:0:0,-47.5627,-498.106	0/0:122:122,0:122:4320:0:0:0,-36.7257,-388.981	0/0:81:81,0:81:2865:0:0:0,-24.3834,-258.088	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:102:102,0:102:3625:0:0:0,-30.7051,-326.456	0/1:119:65,54:65:2297:54:1944:-139.413,0,-171.168	0/0:207:207,0:207:7373:0:0:0,-62.3132,-663.621	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:98:98,0:98:3487:0:0:0,-29.5009,-314.042	0/1:19:10,9:10:352:9:320:-23.4228,0,-26.2986	0/0:60:60,0:60:2120:0:0:0,-18.0618,-191.069	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:50:14,36:14:504:36:1261:-98.7381,0,-30.6466	0/1:51:15,36:15:540:36:1276:-99.7905,0,-33.584	0/0:100:100,0:100:3524:0:0:0,-30.103,-317.372	0/0:85:85,0:85:3018:0:0:0,-25.5875,-271.851
chr02	16816002	.	T	G	166717	PASS	AB=0.528846;ABP=21.0502;AC=158;AF=0.840426;AN=188;AO=7638;CIGAR=1X;DP=8832;DPB=8832;DPRA=0;EPP=16545.3;EPPR=2574.04;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.9827;MQMR=59.9916;NS=94;NUMALT=1;ODDS=1.4289;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=270648;QR=42646;RO=1188;RPL=6;RPP=16536.6;RPPR=2574.04;RPR=7632;RUN=1;SAF=1;SAP=16580;SAR=7637;SRF=0;SRP=2582.72;SRR=1188;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:1,17:1:36:17:586:-49.4639,-1.82027,0	1/1:183:0,183:0:0:183:6507:-585.716,-55.0885,0	1/1:111:0,109:0:0:109:3833:-344.806,-32.8123,0	1/1:168:0,168:0:0:168:5972:-537.589,-50.573,0	0/1:24:9,15:9:324:15:528:-40.6266,0,-22.2811	0/1:46:17,29:17:612:29:1027:-78.8819,0,-41.5661	0/1:104:44,59:44:1572:59:2093:-157.272,0,-110.406	1/1:110:0,109:0:0:109:3875:-348.586,-32.8123,0	1/1:107:0,107:0:0:107:3804:-342.557,-32.2102,0	1/1:110:0,110:0:0:110:3919:-352.904,-33.1133,0	1/1:77:0,77:0:0:77:2690:-242.343,-23.1793,0	1/1:47:0,47:0:0:47:1675:-151.036,-14.1484,0	1/1:71:0,71:0:0:71:2511:-226.241,-21.3731,0	0/1:103:45,58:45:1616:58:2016:-150.702,0,-114.724	0/1:68:35,33:35:1256:33:1166:-84.7755,0,-92.8752	0/1:53:30,23:30:1076:23:814:-57.6261,0,-81.1983	1/1:101:1,100:1:36:100:3524:-313.771,-26.8058,0	0/1:48:15,33:15:536:33:1171:-91.244,0,-34.1254	1/1:41:0,41:0:0:41:1443:-130.162,-12.3422,0	0/1:149:90,59:90:3216:59:2105:-144.864,0,-244.807	0/1:124:65,58:65:2336:58:2076:-149.724,0,-173.113	1/1:128:2,126:2:72:126:4475:-396.083,-31.6951,0	1/1:63:0,63:0:0:63:2239:-201.773,-18.9649,0	0/1:102:15,87:15:540:87:3073:-246.094,0,-18.2315	1/1:52:0,52:0:0:52:1826:-164.617,-15.6536,0	1/1:301:0,301:0:0:301:10721:-964.8,-90.61,0	1/1:142:0,142:0:0:142:5057:-455.276,-42.7463,0	1/1:26:0,26:0:0:26:921:-83.2052,-7.82678,0	0/1:253:139,113:139:4992:113:4030:-286.669,0,-373.207	1/1:186:0,186:0:0:186:6619:-595.791,-55.9916,0	0/1:123:53,70:53:1904:70:2472:-185.706,0,-134.611	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:174:0,174:0:0:174:6179:-556.208,-52.3792,0	1/1:346:1,345:1:36:345:12295:-1102.73,-100.558,0	1/1:84:0,84:0:0:84:2958:-266.453,-25.2865,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:145:0,145:0:0:145:5153:-463.911,-43.6494,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:113:43,70:43:1548:70:2476:-189.076,0,-105.597	0/1:50:30,20:30:1076:20:705:-48.7213,0,-82.1014	0/1:50:23,27:23:828:27:948:-70.5804,0,-59.7926	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0	0/1:119:63,56:63:2264:56:1983:-142.921,0,-168.2	1/1:191:2,189:2:72:189:6678:-594.264,-50.66,0	1/1:146:0,146:0:0:146:5180:-466.343,-43.9504,0	1/1:191:0,191:0:0:191:6772:-609.557,-57.4967,0	1/1:166:1,165:1:36:165:5890:-526.613,-46.3727,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:166:0,166:0:0:166:5907:-531.743,-49.971,0	1/1:79:0,79:0:0:79:2780:-250.44,-23.7814,0	0/1:11:3,8:3:108:8:275:-21.7721,0,-6.76384	0/1:140:64,76:64:2304:76:2708:-201.819,0,-165.476	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:127:1,126:1:36:126:4467:-398.601,-34.6325,0	1/1:162:0,162:0:0:162:5729:-515.728,-48.7669,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:168:0,168:0:0:168:5982:-538.489,-50.573,0	0/1:208:100,108:100:3588:108:3798:-279.404,0,-260.506	1/1:104:1,103:1:36:103:3661:-326.096,-27.7088,0	1/1:76:0,76:0:0:76:2697:-242.974,-22.8783,0	0/1:147:86,61:86:3092:61:2148:-149.334,0,-234.255	1/1:150:2,148:2:72:148:5225:-463.555,-38.3178,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:65:1,64:1:36:64:2272:-201.143,-15.9687,0	0/1:111:44,67:44:1575:67:2381:-181.131,0,-108.626	1/1:24:0,24:0:0:24:841:-76.0064,-7.22472,0	1/1:105:0,105:0:0:105:3722:-335.18,-31.6082,0	0/1:58:33,25:33:1188:25:883:-62.3277,0,-89.7689	1/1:221:1,220:1:36:220:7825:-700.679,-62.9294,0	1/1:74:0,74:0:0:74:2605:-234.698,-22.2762,0	1/1:139:0,139:0:0:139:4893:-440.514,-41.8432,0	1/1:126:0,126:0:0:126:4460:-401.571,-37.9298,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:84:1,83:1:36:83:2968:-263.754,-21.6882,0	0/1:84:37,47:37:1328:47:1666:-124.939,0,-94.5357	1/1:134:0,134:0:0:134:4724:-425.32,-40.338,0	1/1:108:0,108:0:0:108:3846:-346.334,-32.5112,0	1/1:76:0,76:0:0:76:2701:-243.333,-22.8783,0	1/1:74:0,74:0:0:74:2617:-235.777,-22.2762,0	1/1:134:0,134:0:0:134:4703:-423.429,-40.338,0	0/1:39:19,20:19:671:20:697:-51.3105,0,-48.9756	1/1:61:0,61:0:0:61:2154:-194.127,-18.3628,0	1/1:67:0,67:0:0:67:2336:-210.498,-20.169,0	1/1:27:0,27:0:0:27:944:-85.2713,-8.12781,0	0/1:90:25,65:25:900:65:2297:-179.897,0,-54.2283	0/1:54:31,23:31:1116:23:785:-54.7051,0,-84.4961	1/1:93:0,93:0:0:93:3273:-294.765,-27.9958,0	1/1:73:0,73:0:0:73:2558:-230.467,-21.9752,0
chr02	16889880	.	T	A	165363	PASS	AB=0.532224;ABP=24.1421;AC=157;AF=0.835106;AN=188;AO=7378;CIGAR=1X;DP=8496;DPB=8496;DPRA=30.7609;EPP=15311.3;EPPR=2299.79;GTI=4;LEN=1;MEANALT=1.04348;MQM=59.9074;MQMR=59.9479;NS=94;NUMALT=1;ODDS=0.915769;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261976;QR=39562;RO=1113;RPL=7295;RPP=15311.3;RPPR=2299.79;RPR=83;RUN=1;SAF=0;SAP=16024.1;SAR=7378;SRF=0;SRP=2419.86;SRR=1113;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1950:-175.719,-16.5567,0	1/1:86:0,86:0:0:86:3056:-275.271,-25.8886,0	1/1:154:1,153:1:36:153:5442:-486.025,-42.7603,0	1/1:206:0,206:0:0:206:7296:-656.692,-62.0122,0	0/1:47:26,21:26:928:21:725:-51.417,0,-69.6817	0/1:36:12,24:12:428:24:847:-65.7116,0,-28.0217	0/1:84:33,51:33:1163:51:1765:-133.71,0,-79.6896	1/1:147:0,147:0:0:147:5165:-464.996,-44.2514,0	1/1:98:0,98:0:0:98:3466:-312.151,-29.5009,0	1/1:70:0,70:0:0:70:2465:-222.104,-21.0721,0	1/1:66:0,66:0:0:66:2303:-207.527,-19.868,0	1/1:100:0,99:0:0:99:3511:-315.834,-29.802,0	1/1:88:0,88:0:0:88:3140:-282.818,-26.4906,0	0/1:43:24,19:24:864:19:676:-48.2231,0,-65.1383	0/1:77:35,42:35:1240:42:1500:-112.107,0,-88.7251	0/1:56:29,27:29:1032:27:952:-69.1375,0,-76.3358	1/1:38:0,38:0:0:38:1355:-122.06,-11.4391,0	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	1/1:37:0,37:0:0:37:1310:-118.2,-11.1381,0	0/1:249:85,164:85:3001:164:5843:-450.968,0,-195.366	0/1:119:61,58:61:2179:58:2059:-149.749,0,-160.553	1/1:85:0,85:0:0:85:3006:-270.772,-25.5876,0	1/1:152:2,150:2:72:150:5313:-471.859,-39.31,0	1/1:28:2,26:2:72:26:924:-76.6409,-1.59212,0	1/1:64:0,64:0:0:64:2291:-206.451,-19.2659,0	1/1:180:0,180:0:0:180:6365:-572.937,-54.1854,0	1/1:308:0,308:0:0:308:10947:-985.049,-92.7172,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:207:89,118:89:3144:118:4218:-317.486,0,-220.606	1/1:110:0,109:0:0:109:3872:-348.316,-32.8123,0	0/1:108:52,56:52:1829:56:2004:-148.122,0,-132.378	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:170:0,170:0:0:170:6043:-543.975,-51.1751,0	1/1:71:0,71:0:0:71:2513:-226.422,-21.3731,0	1/1:49:0,49:0:0:49:1742:-157.063,-14.7505,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:208:0,206:0:0:206:7334:-659.754,-62.0122,0	1/1:39:0,39:0:0:39:1380:-124.498,-11.7402,0	0/1:203:110,93:110:3936:93:3268:-233.227,0,-293.323	0/1:53:27,26:27:925:26:923:-67.4298,0,-67.6047	0/1:72:37,35:37:1315:35:1229:-89.228,0,-96.9769	1/1:120:0,120:0:0:120:4280:-385.38,-36.1236,0	0/1:117:58,59:58:2060:59:2104:-154.219,0,-150.451	1/1:160:0,160:0:0:160:5703:-513.387,-48.1648,0	1/1:121:0,121:0:0:121:4311:-388.168,-36.4246,0	1/1:136:0,136:0:0:136:4873:-438.722,-40.9401,0	1/1:93:0,93:0:0:93:3281:-295.512,-27.9958,0	0/1:15:11,4:11:384:4:140:-8.42913,0,-30.3792	1/1:119:0,119:0:0:119:4227:-380.609,-35.8226,0	1/1:81:0,81:0:0:81:2884:-259.795,-24.3834,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:120:57,63:57:2009:63:2264:-167.899,0,-144.958	1/1:46:0,46:0:0:46:1631:-147.078,-13.8474,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:73:0,73:0:0:73:2573:-231.5,-21.9752,0	1/1:78:1,77:1:36:77:2725:-241.893,-19.8821,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:178:0,178:0:0:178:6365:-572.94,-53.5833,0	0/1:153:77,76:77:2752:76:2689:-196.194,0,-201.865	1/1:47:1,46:1:36:46:1639:-144.2,-10.5501,0	1/1:110:0,110:0:0:110:3912:-352.178,-33.1133,0	0/1:142:60,82:60:2148:82:2910:-219.301,0,-150.841	1/1:145:2,143:2:68:143:5055:-448.639,-37.1916,0	1/1:45:0,45:0:0:45:1589:-143.299,-13.5464,0	1/1:52:0,52:0:0:52:1855:-167.23,-15.6536,0	0/1:30:20,10:20:716:10:360:-23.7134,0,-55.7368	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:131:0,131:0:0:131:4643:-418.035,-39.4349,0	0/1:103:46,57:46:1636:57:2035:-152.411,0,-116.523	1/1:123:0,123:0:0:123:4393:-395.542,-37.0267,0	1/1:215:0,215:0:0:215:7631:-686.834,-64.7215,0	1/1:106:0,106:0:0:106:3737:-336.529,-31.9092,0	1/1:114:0,113:0:0:113:4051:-364.264,-34.0164,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:159:0,159:0:0:159:5668:-510.184,-47.8638,0	0/1:112:50,62:50:1792:62:2191:-163.737,0,-127.847	1/1:206:0,206:0:0:206:7358:-662.262,-62.0122,0	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:71:0,71:0:0:71:2535:-228.401,-21.3731,0	1/1:59:0,59:0:0:59:2095:-188.819,-17.7608,0	1/1:136:0,136:0:0:136:4834:-434.586,-40.9401,0	0/1:16:2,14:2:72:14:500:-40.5197,0,-2.02024	1/1:57:0,57:0:0:57:2015:-181.62,-17.1587,0	1/1:72:0,72:0:0:72:2559:-230.558,-21.6742,0	1/1:37:0,37:0:0:37:1297:-117.023,-11.1381,0	0/1:69:30,39:30:1076:39:1371:-102.917,0,-76.3818	0/1:67:45,22:45:1605:22:758:-48.3615,0,-124.569	1/1:196:2,194:2:72:194:6835:-608.382,-52.1652,0	1/1:128:0,128:0:0:128:4574:-411.795,-38.5318,0
chr02	16889901	.	G	A	159599	PASS	AB=0.525743;ABP=16.7617;AC=156;AF=0.829787;AN=188;AO=7431;CIGAR=1X;DP=8585;DPB=8585;DPRA=31.0833;EPP=16139.2;EPPR=2504.55;GTI=4;LEN=1;MEANALT=1.01087;MQM=59.8988;MQMR=59.9722;NS=94;NUMALT=1;ODDS=1.68435;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=260730;QR=41076;RO=1152;RPL=7431;RPP=16139.2;RPPR=2504.55;RPR=0;RUN=1;SAF=0;SAP=16139.2;SAR=7431;SRF=0;SRP=2504.55;SRR=1152;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62:0:0:62:2152:-193.827,-18.6639,0	1/1:88:0,88:0:0:88:3124:-281.388,-26.4906,0	1/1:150:4,146:4:144:146:5139:-448.343,-31.8409,0	1/1:210:0,210:0:0:210:7362:-662.635,-63.2163,0	0/1:49:28,21:28:1000:21:740:-52.1683,0,-75.5567	0/1:35:12,23:12:432:23:778:-59.7938,0,-28.6851	0/1:80:34,45:34:1208:45:1564:-115.971,0,-84.885	1/1:141:0,141:0:0:141:4937:-444.492,-42.4452,0	1/1:98:0,98:0:0:98:3408:-306.939,-29.5009,0	1/1:70:0,70:0:0:70:2476:-223.095,-21.0721,0	1/1:71:0,71:0:0:71:2495:-224.805,-21.3731,0	1/1:99:0,99:0:0:99:3480:-313.401,-29.802,0	1/1:89:0,89:0:0:89:3136:-282.459,-26.7917,0	0/1:41:24,17:24:843:17:592:-41.2641,0,-63.8458	0/1:77:34,43:34:1212:43:1532:-114.986,0,-86.207	0/1:54:28,26:28:1004:26:912:-66.1402,0,-74.4202	1/1:40:0,40:0:0:40:1411:-127.096,-12.0412,0	0/1:25:11,14:11:396:14:492:-37.0866,0,-28.457	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	0/1:254:89,165:89:3188:165:5781:-443.956,0,-210.682	0/1:119:59,60:59:2089:60:2072:-150.924,0,-152.456	1/1:93:0,93:0:0:93:3263:-293.89,-27.9958,0	1/1:157:1,156:1:36:156:5508:-491.883,-43.6634,0	1/1:27:2,25:2:72:25:838:-68.89,-1.29109,0	1/1:67:0,67:0:0:67:2332:-210.141,-20.169,0	1/1:184:0,184:0:0:184:6489:-584.051,-55.3895,0	1/1:302:1,301:1:36:301:10522:-943.239,-87.3128,0	1/1:27:0,27:0:0:27:952:-85.9952,-8.12781,0	0/1:211:95,116:95:3384:116:4057:-301.805,0,-240.987	1/1:113:0,113:0:0:113:3997:-359.923,-34.0164,0	0/1:109:54,55:54:1940:55:1924:-140.625,0,-142.064	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:172:0,172:0:0:172:6097:-548.837,-51.7772,0	1/1:72:0,72:0:0:72:2536:-228.493,-21.6742,0	1/1:50:0,50:0:0:50:1787:-161.112,-15.0515,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:223:0,223:0:0:223:7866:-707.983,-67.1297,0	1/1:39:0,39:0:0:39:1368:-123.418,-11.7402,0	0/1:209:113,96:113:4056:96:3395:-242.849,0,-302.311	0/1:51:27,24:27:957:24:835:-60.1131,0,-71.0913	0/1:72:38,34:38:1356:34:1203:-86.8983,0,-100.666	1/1:118:0,118:0:0:118:4107:-369.823,-35.5215,0	0/1:121:60,61:60:2113:61:2142:-156.613,0,-154.013	1/1:166:0,166:0:0:166:5852:-526.801,-49.971,0	1/1:120:0,120:0:0:120:4248:-382.502,-36.1236,0	1/1:134:0,134:0:0:134:4744:-427.125,-40.338,0	1/1:90:0,90:0:0:90:3113:-280.403,-27.0927,0	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	1/1:119:0,119:0:0:119:4180:-376.344,-35.8226,0	1/1:79:0,79:0:0:79:2742:-247.023,-23.7814,0	0/1:11:3,8:3:108:8:280:-22.228,0,-6.76384	0/1:131:63,68:63:2255:68:2368:-173.942,0,-163.777	1/1:48:0,48:0:0:48:1669:-150.492,-14.4494,0	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/0:4:3,0:3:108:0:0:0,-0.90309,-9.71534	1/1:73:0,73:0:0:73:2552:-229.157,-21.9752,0	1/1:80:1,79:1:36:79:2768:-245.764,-20.4841,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:182:0,182:0:0:182:6417:-577.627,-54.7875,0	0/1:155:78,77:78:2776:77:2685:-195.235,0,-203.422	1/1:49:1,48:1:36:48:1700:-149.688,-11.1522,0	1/1:113:0,113:0:0:113:3968:-357.279,-34.0164,0	0/1:145:61,84:61:2176:84:2902:-217.761,0,-152.457	1/1:147:2,145:2:72:145:5105:-452.275,-37.4147,0	1/1:49:0,49:0:0:49:1735:-156.434,-14.7505,0	1/1:49:0,49:0:0:49:1724:-155.445,-14.7505,0	0/1:32:20,12:20:708:12:424:-28.8635,0,-54.4126	1/1:12:0,12:0:0:12:420:-38.134,-3.61236,0	1/1:121:1,120:1:36:120:4177:-372.525,-32.8264,0	0/1:108:50,58:50:1779:58:2017:-149.283,0,-127.881	1/1:122:0,122:0:0:122:4264:-383.95,-36.7257,0	1/1:213:0,213:0:0:213:7473:-672.633,-64.1194,0	1/1:107:0,107:0:0:107:3771:-339.583,-32.2102,0	1/1:115:0,115:0:0:115:4027:-362.346,-34.6185,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:158:0,158:0:0:158:5552:-499.687,-47.5627,0	0/1:113:52,61:52:1849:61:2144:-159.199,0,-132.672	1/1:214:0,214:0:0:214:7463:-671.735,-64.4204,0	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	1/1:74:0,74:0:0:74:2605:-234.699,-22.2762,0	1/1:60:0,60:0:0:60:2110:-190.166,-18.0618,0	1/1:134:0,134:0:0:134:4662:-419.702,-40.338,0	0/1:17:2,15:2:72:15:519:-41.9192,0,-1.71921	1/1:54:0,54:0:0:54:1871:-168.668,-16.2556,0	1/1:71:0,71:0:0:71:2484:-223.816,-21.3731,0	1/1:33:0,33:0:0:33:1163:-104.844,-9.93399,0	0/1:72:32,40:32:1135:40:1398:-104.441,0,-80.7839	0/1:69:47,22:47:1680:22:788:-50.469,0,-130.716	1/1:196:2,194:2:72:194:6773:-602.787,-52.1652,0	1/1:128:0,128:0:0:128:4480:-403.346,-38.5318,0
chr02	16891340	.	CACC	AACC,AACA	146716	PASS	AB=0.559846,0.433719;ABP=51.3528,62.308;AC=159,29;AF=0.845745,0.154255;AN=188;AO=5355,684;CIGAR=1X3M,1X2M1X;DP=6076;DPB=6076;DPRA=0,0.936819;EPP=35.4867,34.757;EPPR=9.52472;GTI=2;LEN=1,4;MEANALT=1.70213,2.32353;MQM=35.8913,35.5804;MQMR=56;NS=94;NUMALT=2;ODDS=2.18529;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=180845,22454;QR=80;RO=3;RPL=2536,292;RPP=35.4867,34.757;RPPR=9.52472;RPR=2819,392;RUN=1,1;SAF=5355,684;SAP=11631.2,1488.3;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18,0:0:0:18,0:607,0:-52.2628,-5.41854,0,-52.2628,-5.41854,-52.2628	1/1:87:0,85,1:0:0:85,1:2916,24:-249.59,-25.5876,0,-248.05,-24.0539,-247.749	1/1:48:0,46,0:0:0:46,0:1605,0:-137.239,-13.8474,0,-137.239,-13.8474,-137.239	1/1:168:0,167,1:0:0:167,1:5554,36:-456.626,-50.272,0,-454.707,-48.1061,-454.406	1/2:32:0,20,11:0:0:20,11:690,336:-78.9049,-25.6695,-19.6489,-53.2962,0,-49.9848	1/2:38:0,19,19:0:0:19,19:669,603:-98.7998,-47.1591,-41.4396,-51.962,0,-46.2425	1/2:67:0,43,24:0:0:43,24:1437,752:-161.079,-55.0831,-42.1388,-106.29,0,-99.0657	1/1:127:0,126,0:0:0:126,0:4281,0:-367.148,-37.9298,0,-367.148,-37.9298,-367.148	1/1:32:0,32,0:0:0:32,0:1101,0:-94.5062,-9.63296,0,-94.5062,-9.63296,-94.5062	1/1:56:0,56,0:0:0:56,0:1842,0:-151.578,-16.8577,0,-151.578,-16.8577,-151.578	1/1:24:0,24,0:0:0:24,0:752,0:-62.9488,-7.22472,0,-62.9488,-7.22472,-62.9488	1/1:51:0,51,0:0:0:51,0:1797,0:-154.073,-15.3525,0,-154.073,-15.3525,-154.073	1/1:62:0,62,0:0:0:62,0:2205,0:-188.897,-18.6639,0,-188.897,-18.6639,-188.897	1/2:26:0,18,8:0:0:18,8:640,282:-71.6461,-22.1451,-16.7265,-49.8382,0,-47.4299	1/2:38:0,29,9:0:0:29,9:973,293:-92.9281,-21.8573,-13.1274,-71.3719,0,-68.6626	1/2:25:0,18,7:0:0:18,7:640,230:-67.7537,-18.1084,-12.6899,-49.9679,0,-47.8607	1/1:34:0,34,0:0:0:34,0:1182,0:-101.599,-10.235,0,-101.599,-10.235,-101.599	1/2:34:0,19,15:0:0:19,15:674,504:-91.2032,-39.2951,-33.5756,-52.2367,0,-47.7212	1/1:29:0,28,0:0:0:28,0:958,0:-82.1888,-8.42884,0,-82.1888,-8.42884,-82.1888	1/2:135:0,72,61:0:0:72,61:2402,1993:-320.989,-144.483,-122.809,-176.602,0,-158.24	1/2:91:0,67,23:0:0:67,23:2344,765:-239.706,-59.2399,-39.0709,-180.564,0,-173.64	1/1:54:0,54,0:0:0:54,0:1756,0:-145.063,-16.2556,0,-145.063,-16.2556,-145.063	1/1:40:0,40,0:0:0:40,0:1295,0:-107.237,-12.0412,0,-107.237,-12.0412,-107.237	1/1:98:0,94,4:0:0:94,4:3282,140:-281.718,-28.2968,0,-270.85,-17.0936,-269.646	1/1:33:0,33,0:0:0:33,0:1184,0:-101.9,-9.93399,0,-101.9,-9.93399,-101.9	1/1:216:0,213,0:0:0:213,0:6968,0:-573.34,-64.1194,0,-573.34,-64.1194,-573.34	1/1:139:0,139,0:0:0:139,0:4818,0:-413.647,-41.8432,0,-413.647,-41.8432,-413.647	1/1:16:0,16,0:0:0:16,0:563,0:-48.6882,-4.81648,0,-48.6882,-4.81648,-48.6882	1/2:172:0,89,80:0:0:89,80:2903,2646:-403.247,-191.73,-164.938,-211.612,0,-187.53	1/1:87:0,87,0:0:0:87,0:2933,0:-251.539,-26.1896,0,-251.539,-26.1896,-251.539	1/2:51:0,23,28:0:0:23,28:782,920:-124.175,-66.7505,-59.8268,-57.7294,0,-49.3006	1/1:7:0,7,0:0:0:7,0:237,0:-20.6947,-2.10721,0,-20.6947,-2.10721,-20.6947	1/1:10:0,10,0:0:0:10,0:356,0:-30.8794,-3.0103,0,-30.8794,-3.0103,-30.8794	1/1:4:0,4,0:0:0:4,0:114,0:-10.1651,-1.20412,0,-10.1651,-1.20412,-10.1651	1/2:10:0,7,3:0:0:7,3:226,98:-25.1124,-7.95722,-5.85001,-17.4685,0,-16.5654	1/1:5:0,5,0:0:0:5,0:169,0:-14.6225,-1.50515,0,-14.6225,-1.50515,-14.6225	1/1:126:0,124,1:0:0:124,1:4092,24:-336.463,-37.3277,0,-334.923,-35.784,-334.622	1/1:129:0,127,0:0:0:127,0:4375,0:-375.598,-38.2308,0,-375.598,-38.2308,-375.598	1/1:34:0,34,0:0:0:34,0:1174,0:-100.848,-10.235,0,-100.848,-10.235,-100.848	1/1:1:0,1,0:0:0:1,0:36,0:-3.4236,-0.30103,0,-3.4236,-0.30103,-3.4236	1/1:104:0,104,0:0:0:104,0:3624,0:-311.065,-31.3071,0,-311.065,-31.3071,-311.065	1/1:24:0,24,0:0:0:24,0:842,0:-72.4319,-7.22472,0,-72.4319,-7.22472,-72.4319	1/2:102:0,59,43:0:0:59,43:2044,1394:-265.555,-108.504,-90.7428,-157.371,0,-144.427	1/2:27:0,22,5:0:0:22,5:718,162:-63.6179,-11.4858,-4.86316,-52.4171,0,-50.912	1/2:30:0,19,11:0:0:19,11:646,361:-72.8806,-25.3994,-19.6798,-47.7772,0,-44.4658	1/1:65:0,65,0:0:0:65,0:2138,0:-176.263,-19.567,0,-176.263,-19.567,-176.263	1/2:69:0,35,34:0:0:35,34:1186,1131:-177.577,-86.6055,-76.0695,-91.2906,0,-81.0556	1/1:142:0,142,0:0:0:142,0:4709,0:-389.606,-42.7463,0,-389.606,-42.7463,-389.606	1/1:135:0,135,0:0:0:135,0:4434,0:-365.235,-40.6391,0,-365.235,-40.6391,-365.235	1/1:93:0,91,0:0:0:91,0:3014,0:-248.181,-27.3937,0,-248.181,-27.3937,-248.181	1/1:111:1,109,0:1:25:109,0:3630,0:-297.029,-30.8338,0,-297.33,-32.8123,-299.278	1/2:10:0,4,6:0:0:4,6:123,192:-23.2797,-14.2483,-13.0442,-9.31877,0,-7.51259	1/1:103:0,103,0:0:0:103,0:3603,0:-309.252,-31.0061,0,-309.252,-31.0061,-309.252	1/1:8:0,8,0:0:0:8,0:233,0:-19.3221,-2.40824,0,-19.3221,-2.40824,-19.3221	1/2:23:0,10,13:0:0:10,13:356,429:-61.0383,-33.4988,-30.4885,-27.8691,0,-23.9557	1/2:73:0,45,28:0:0:45,28:1572,934:-193.729,-72.9883,-59.442,-121.067,0,-112.638	1/1:33:0,33,0:0:0:33,0:1081,0:-89.588,-9.93399,0,-89.588,-9.93399,-89.588	1/2:13:0,10,3:0:0:10,3:338,92:-31.8617,-7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chr02	16891348	.	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chr02	16945394	.	C	T	121073	PASS	AB=0.446112;ABP=58.4762;AC=157;AF=0.835106;AN=188;AO=5611;CIGAR=1X;DP=6854;DPB=6854;DPRA=24.8116;EPP=12187.1;EPPR=2699.98;GTI=1;LEN=1;MEANALT=1.01087;MQM=54.0417;MQMR=59.7053;NS=94;NUMALT=1;ODDS=1.1746;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199842;QR=44355;RO=1242;RPL=5611;RPP=12187.1;RPPR=2699.98;RPR=0;RUN=1;SAF=0;SAP=12187.1;SAR=5611;SRF=0;SRP=2699.98;SRR=1242;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:489:-44.2263,-4.21442,0	1/1:88:0,88:0:0:88:3137:-281.27,-26.4906,0	1/1:67:0,67:0:0:67:2393:-212.921,-20.169,0	1/1:122:1,121:1:36:121:4314:-384.189,-33.1274,0	0/1:45:28,17:28:1004:17:593:-40.0735,0,-77.1249	0/1:45:25,20:25:896:20:720:-51.1561,0,-67.4025	0/1:48:27,21:27:972:21:752:-53.3348,0,-73.3485	1/1:101:0,101:0:0:101:3589:-321.629,-30.404,0	1/1:59:0,59:0:0:59:2116:-189.628,-17.7608,0	1/1:86:0,86:0:0:86:3049:-273.323,-25.8886,0	1/1:62:1,61:1:36:61:2158:-190.165,-15.0656,0	1/1:69:0,69:0:0:69:2465:-219.449,-20.7711,0	1/1:74:0,74:0:0:74:2656:-238.023,-22.2762,0	0/1:88:43,45:43:1529:45:1616:-117.703,0,-111.406	0/1:61:29,32:29:1036:32:1125:-83.0385,0,-75.182	0/1:66:34,32:34:1209:32:1137:-82.4128,0,-89.2083	1/1:80:0,80:0:0:80:2876:-257.274,-24.0824,0	0/1:74:41,33:41:1476:33:1176:-82.0231,0,-110.582	1/1:26:0,26:0:0:26:921:-82.9911,-7.82678,0	0/1:113:67,46:67:2408:46:1633:-112.732,0,-182.957	0/1:130:66,64:66:2353:64:2288:-166.398,0,-172.893	1/1:83:0,83:0:0:83:2957:-266.116,-24.9855,0	1/1:72:2,70:2:72:70:2459:-214.308,-14.8374,0	1/1:70:4,66:4:140:66:2308:-194.499,-8.13088,0	1/1:29:0,29:0:0:29:1040:-93.7834,-8.72987,0	1/1:268:0,268:0:0:268:9434:-847.692,-80.676,0	1/1:147:0,147:0:0:147:5276:-473.008,-44.2514,0	1/1:29:0,29:0:0:29:1036:-92.9789,-8.72987,0	0/1:149:86,63:86:3065:63:2249:-157.704,0,-231.219	1/1:79:0,79:0:0:79:2817:-251.961,-23.7814,0	0/1:108:66,42:66:2338:42:1485:-101.235,0,-178.158	1/1:7:0,7:0:0:7:252:-22.9963,-2.10721,0	1/1:7:0,7:0:0:7:252:-22.8659,-2.10721,0	1/1:4:0,4:0:0:4:140:-12.9161,-1.20412,0	0/1:7:6,1:6:216:1:36:-1.48202,0,-17.675	1/1:2:0,2:0:0:2:68:-6.44566,-0.60206,0	1/1:205:0,205:0:0:205:7320:-657.632,-61.7112,0	1/1:128:0,128:0:0:128:4551:-407.606,-38.5318,0	1/1:51:0,51:0:0:51:1817:-162.916,-15.3525,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:69:0,68:0:0:68:2411:-215.478,-20.47,0	1/1:25:0,25:0:0:25:889:-80.0291,-7.52575,0	0/1:117:63,54:63:2234:54:1921:-137.09,0,-166.095	0/1:77:35,42:35:1260:42:1512:-112.929,0,-90.5157	0/1:69:39,30:39:1404:30:1061:-74.8581,0,-105.8	1/1:53:0,53:0:0:53:1881:-169.411,-15.9546,0	0/1:79:46,33:46:1656:33:1180:-82.4453,0,-125.539	1/1:115:0,115:0:0:115:4106:-368.931,-34.6185,0	1/1:93:0,93:0:0:93:3278:-294.712,-27.9958,0	1/1:80:0,80:0:0:80:2849:-256.16,-24.0824,0	1/1:80:0,80:0:0:80:2857:-256.985,-24.0824,0	0/1:21:16,5:16:576:5:180:-10.2185,0,-45.8534	1/1:74:0,74:0:0:74:2649:-237.744,-22.2762,0	1/1:18:0,18:0:0:18:644:-58.2748,-5.41854,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:102:63,39:63:2226:39:1396:-94.1542,0,-169.565	1/1:13:0,13:0:0:13:453:-41.0713,-3.91339,0	1/1:3:0,3:0:0:3:108:-10.0724,-0.90309,0	0/1:7:2,5:2:72:5:180:-14.4402,0,-4.72951	1/1:38:0,38:0:0:38:1345:-120.929,-11.4391,0	1/1:117:1,116:1:36:116:4122:-365.917,-31.6222,0	1/1:6:0,6:0:0:6:212:-19.4097,-1.80618,0	1/1:174:0,174:0:0:174:6214:-558.03,-52.3792,0	0/1:200:117,83:117:4162:83:2916:-202.26,0,-314.415	1/1:34:2,32:2:72:32:1133:-95.2926,-3.3983,0	1/1:46:0,46:0:0:46:1622:-145.132,-13.8474,0	0/1:134:79,55:79:2806:55:1961:-136.047,0,-212.439	1/1:71:0,71:0:0:71:2552:-229.639,-21.3731,0	1/1:21:0,21:0:0:21:752:-67.2847,-6.32163,0	1/1:62:0,62:0:0:62:2232:-199.964,-18.6639,0	0/1:121:59,62:59:2120:62:2198:-161.483,0,-154.641	1/1:24:0,24:0:0:24:864:-78.0103,-7.22472,0	1/1:37:1,36:1:36:36:1258:-109.458,-7.53984,0	0/1:54:18,36:18:644:36:1273:-98.2551,0,-42.035	1/1:117:0,117:0:0:117:4191:-376.094,-35.2205,0	1/1:85:0,85:0:0:85:3022:-271.874,-25.5876,0	1/1:41:0,41:0:0:41:1442:-128.661,-12.3422,0	1/1:96:1,95:1:32:95:3371:-298.117,-25.7032,0	1/1:10:0,10:0:0:10:356:-32.3016,-3.0103,0	1/1:68:1,67:1:36:67:2412:-213.093,-16.8718,0	0/1:95:48,47:48:1705:47:1662:-120.629,0,-125.112	1/1:126:0,126:0:0:126:4509:-405.316,-37.9298,0	1/1:149:1,148:1:36:148:5292:-471.496,-41.2552,0	1/1:84:0,84:0:0:84:3016:-271.071,-25.2865,0	1/1:82:0,82:0:0:82:2906:-261.218,-24.6845,0	1/1:163:2,161:2:72:161:5750:-508.856,-42.2312,0	0/1:47:26,21:26:936:21:756:-53.8645,0,-70.4111	1/1:88:0,88:0:0:88:3130:-279.408,-26.4906,0	1/1:68:1,67:1:36:67:2397:-211.018,-16.8718,0	1/1:32:0,32:0:0:32:1152:-103.338,-9.63296,0	0/1:84:46,38:46:1652:38:1361:-96.1277,0,-123.668	0/1:58:43,15:43:1544:15:540:-31.4415,0,-121.786	1/1:62:0,62:0:0:62:2224:-200.124,-18.6639,0	1/1:96:0,96:0:0:96:3444:-309.817,-28.8989,0
chr02	17057074	.	T	A	120396	PASS	AB=0.51507;ABP=6.67539;AC=158;AF=0.840426;AN=188;AO=5538;CIGAR=1X;DP=6453;DPB=6453;DPRA=0;EPP=12028.6;EPPR=1985.56;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9899;MQMR=59.8686;NS=94;NUMALT=1;ODDS=2.45687;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196178;QR=32579;RO=913;RPL=0;RPP=12028.6;RPPR=1985.56;RPR=5538;RUN=1;SAF=5538;SAP=12028.6;SAR=0;SRF=913;SRP=1985.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:111:0,111:0:0:111:3919:-352.903,-33.4143,0	1/1:69:0,69:0:0:69:2461:-221.735,-20.7711,0	1/1:92:0,92:0:0:92:3276:-295.061,-27.6948,0	0/1:54:22,32:22:784:32:1144:-87.0139,0,-54.6283	0/1:37:18,19:18:644:19:669:-49.3958,0,-47.1525	0/1:82:28,54:28:1004:54:1891:-145.778,0,-65.9914	1/1:143:0,143:0:0:143:5050:-454.646,-43.0473,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:69:0,69:0:0:69:2449:-220.664,-20.7711,0	1/1:52:0,52:0:0:52:1841:-165.968,-15.6536,0	1/1:59:0,59:0:0:59:2094:-188.727,-17.7608,0	1/1:71:0,71:0:0:71:2532:-228.132,-21.3731,0	0/1:61:23,38:23:828:38:1356:-103.978,0,-56.4813	0/1:48:26,22:26:932:22:769:-55.0792,0,-69.7494	0/1:53:24,29:24:864:29:1021:-76.2457,0,-62.1234	1/1:57:0,57:0:0:57:1994:-179.731,-17.1587,0	0/1:55:27,28:27:964:28:992:-73.0377,0,-70.5168	1/1:65:0,64:0:0:64:2296:-206.541,-19.2659,0	0/1:44:16,28:16:576:28:1004:-77.4305,0,-38.9297	0/1:140:66,74:66:2357:74:2613:-193.265,0,-170.243	1/1:25:0,25:0:0:25:869:-78.5239,-7.52575,0	1/1:38:0,38:0:0:38:1336:-120.452,-11.4391,0	1/1:73:1,72:1:36:72:2548:-225.97,-18.3769,0	1/1:48:0,48:0:0:48:1701:-153.374,-14.4494,0	1/1:164:0,164:0:0:164:5813:-523.285,-49.3689,0	1/1:143:0,143:0:0:143:5078:-457.165,-43.0473,0	1/1:41:0,41:0:0:41:1449:-130.704,-12.3422,0	0/1:117:65,52:65:2321:52:1860:-132.459,0,-173.928	1/1:100:0,100:0:0:100:3510:-316.113,-30.103,0	0/1:72:39,33:39:1389:33:1184:-85.1942,0,-103.633	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:5,6:5:161:6:216:-16.4792,0,-11.4952	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:210:0,210:0:0:210:7432:-668.929,-63.2163,0	1/1:147:0,147:0:0:147:5191:-467.332,-44.2514,0	1/1:90:0,90:0:0:90:3213:-289.391,-27.0927,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:93:0,93:0:0:93:3294:-296.678,-27.9958,0	1/1:32:0,32:0:0:32:1121:-101.196,-9.63296,0	0/1:47:22,25:22:788:25:896:-66.8119,0,-57.0964	0/1:83:42,41:42:1512:41:1445:-105.358,0,-111.389	0/1:59:30,29:30:1061:29:1019:-74.2606,0,-77.1807	1/1:65:0,65:0:0:65:2255:-203.209,-19.567,0	0/1:86:36,50:36:1281:50:1765:-133.243,0,-89.7027	1/1:80:1,79:1:36:79:2821:-250.529,-20.4841,0	1/1:49:0,49:0:0:49:1711:-154.269,-14.7505,0	1/1:95:0,95:0:0:95:3385:-304.865,-28.5979,0	1/1:138:0,138:0:0:138:4897:-440.884,-41.5421,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	1/1:75:0,75:0:0:75:2659:-239.556,-22.5773,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:83:49,34:49:1733:34:1174:-80.974,0,-131.267	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:35:0,35:0:0:35:1203:-108.567,-10.5361,0	1/1:153:0,153:0:0:153:5468:-492.249,-46.0576,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:130:0,130:0:0:130:4594:-413.627,-39.1339,0	0/1:182:72,110:72:2580:110:3873:-293.974,0,-177.662	1/1:70:2,68:2:72:68:2436:-212.659,-14.2354,0	1/1:49:0,49:0:0:49:1737:-156.613,-14.7505,0	0/1:92:51,41:51:1809:41:1464:-104.361,0,-135.393	1/1:76:3,73:3:108:73:2589:-223.183,-12.8031,0	1/1:18:0,18:0:0:18:625:-56.5725,-5.41854,0	1/1:82:0,82:0:0:82:2898:-261.058,-24.6845,0	0/1:72:27,45:27:968:45:1612:-123.696,0,-65.7632	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:29:0,29:0:0:29:1017:-91.8398,-8.72987,0	0/1:64:28,36:28:993:36:1277:-95.9618,0,-70.4166	1/1:85:0,84:0:0:84:2964:-266.783,-25.2865,0	1/1:90:0,90:0:0:90:3206:-288.762,-27.0927,0	1/1:79:0,79:0:0:79:2775:-249.989,-23.7814,0	1/1:87:1,86:1:36:86:3050:-271.129,-22.5913,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	0/1:41:25,16:25:896:16:572:-39.4712,0,-68.6181	1/1:141:0,141:0:0:141:4954:-446.014,-42.4452,0	1/1:82:3,79:3:108:79:2789:-243.288,-16.7212,0	1/1:50:0,50:0:0:50:1769:-159.491,-15.0515,0	1/1:86:0,86:0:0:86:3065:-276.078,-25.8886,0	1/1:142:1,141:1:36:141:5006:-447.09,-39.148,0	0/1:58:24,34:24:849:34:1224:-93.0073,0,-59.2681	1/1:102:0,102:0:0:102:3637:-327.526,-30.7051,0	1/1:83:0,83:0:0:83:2957:-266.362,-24.9855,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:100:54,46:54:1928:46:1644:-118.145,0,-143.694	0/1:88:66,22:66:2353:22:752:-41.5035,0,-185.537	1/1:70:0,70:0:0:70:2455:-221.201,-21.0721,0	1/1:116:0,116:0:0:116:4089:-368.201,-34.9195,0
chr02	17057113	.	C	T	14813.1	PASS	AB=0.485515;ABP=6.4073;AC=30;AF=0.159574;AN=188;AO=920;CIGAR=1X;DP=6493;DPB=6493;DPRA=1.05522;EPP=2000.76;EPPR=12089.4;GTI=2;LEN=1;MEANALT=1.05128;MQM=59.8761;MQMR=59.9971;NS=94;NUMALT=1;ODDS=2.516;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32789;QR=197839;RO=5570;RPL=919;RPP=1992.09;RPPR=12089.4;RPR=1;RUN=1;SAF=919;SAP=1992.09;SAR=1;SRF=5570;SRP=12098.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.386	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/0:91:91,0:91:3220:0:0:0,-27.3937,-290.023	0/1:55:33,22:33:1184:22:771:-53.1522,0,-90.3117	0/1:35:17,18:17:595:18:644:-47.7545,0,-43.3406	0/1:82:54,28:54:1919:28:997:-65.3602,0,-148.302	0/0:142:142,0:142:5039:0:0:0,-42.7463,-453.658	0/0:41:41,0:41:1456:0:0:0,-12.3422,-131.336	0/0:70:70,0:70:2466:0:0:0,-21.0721,-222.192	0/0:52:52,0:52:1842:0:0:0,-15.6536,-166.059	0/0:63:63,0:63:2232:0:0:0,-18.9649,-201.142	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:61:38,23:38:1349:23:828:-56.4813,0,-103.345	0/1:51:24,27:24:845:27:963:-71.6342,0,-61.0146	0/1:51:28,23:28:1004:23:824:-59.1262,0,-75.3233	0/0:57:57,0:57:2004:0:0:0,-17.1587,-180.631	0/1:55:27,28:27:972:28:970:-71.0506,0,-71.2413	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:45:29,16:29:1035:16:576:-38.6286,0,-79.9167	0/1:137:71,66:71:2510:66:2359:-171.327,0,-184.904	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/0:37:37,0:37:1300:0:0:0,-11.1381,-117.298	0/0:73:71,2:71:2528:2:72:0,-15.1385,-220.935	0/0:49:49,0:49:1732:0:0:0,-14.7505,-156.162	0/0:166:164,1:164:5831:1:36:0,-46.3566,-521.377	0/0:144:144,0:144:5130:0:0:0,-43.3483,-461.844	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:118:53,65:53:1888:65:2324:-173.899,0,-134.677	0/0:101:101,0:101:3591:0:0:0,-30.404,-323.396	0/1:74:34,40:34:1191:40:1440:-107.622,0,-85.2153	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:210:210,0:210:7459:0:0:0,-63.2163,-671.359	0/0:146:146,0:146:5164:0:0:0,-43.9504,-464.903	0/0:89:89,0:89:3156:0:0:0,-26.7917,-284.267	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:94:93,0:93:3308:0:0:0,-27.9958,-297.578	0/0:33:33,0:33:1158:0:0:0,-9.93399,-104.525	0/1:49:25,24:25:900:24:860:-62.9714,0,-66.5705	0/1:82:41,41:41:1453:41:1468:-107.732,0,-106.379	0/1:57:28,29:28:982:29:1027:-74.7255,0,-71.533	0/0:66:66,0:66:2320:0:0:0,-19.868,-209.056	0/1:87:50,37:50:1788:37:1315:-92.4614,0,-135.013	0/0:80:79,1:79:2812:1:36:0,-20.4841,-249.72	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:96:96,0:96:3419:0:0:0,-28.8989,-307.925	0/0:139:138,1:138:4896:1:36:0,-38.2449,-437.196	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.037	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:81:32,49:32:1140:49:1749:-133.309,0,-78.5258	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/1:9:2,7:2:72:7:242:-19.4068,0,-4.12745	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:149:149,0:149:5298:0:0:0,-44.8535,-476.955	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:127:127,0:127:4503:0:0:0,-38.2308,-405.44	0/1:183:111,72:111:3980:72:2551:-174.75,0,-303.301	0/0:70:68,2:68:2406:2:72:0,-14.2354,-209.96	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:93:42,51:42:1470:51:1813:-135.455,0,-104.595	0/0:75:72,3:72:2557:3:108:0,-12.5021,-220.304	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:82:82,0:82:2872:0:0:0,-24.6845,-258.716	0/1:72:44,27:44:1552:27:968:-65.7045,0,-118.236	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:64:36,28:36:1273:28:1008:-71.7704,0,-95.605	0/0:87:86,1:86:3025:1:32:0,-22.9903,-269.283	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:88:88,0:88:3135:0:0:0,-26.4906,-282.376	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:67:67,0:67:2379:0:0:0,-20.169,-214.368	0/1:41:16,25:16:576:25:883:-67.4452,0,-39.8328	0/0:144:144,0:144:5061:0:0:0,-43.3483,-455.639	0/0:83:80,3:80:2853:3:102:0,-17.0895,-249.111	0/0:49:49,0:49:1739:0:0:0,-14.7505,-156.794	0/0:88:88,0:88:3124:0:0:0,-26.4906,-281.386	0/0:142:141,1:141:5003:1:36:0,-39.148,-446.821	0/1:59:35,24:35:1235:24:864:-60.3218,0,-93.6927	0/0:103:103,0:103:3652:0:0:0,-31.0061,-328.877	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:101:47,54:47:1645:54:1936:-144.112,0,-117.932	0/1:90:24,66:24:845:66:2339:-183.677,0,-49.2744	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	0/0:119:119,0:119:4223:0:0:0,-35.8226,-380.251
chr02	17151898	.	A	G	25218.7	PASS	AB=0.468721;ABP=30.8578;AC=30;AF=0.159574;AN=188;AO=1554;CIGAR=1X;DP=11181;DPB=11181;DPRA=0.921963;EPP=3377.48;EPPR=20907.8;GTI=2;LEN=1;MEANALT=1;MQM=59.9961;MQMR=59.9996;NS=94;NUMALT=1;ODDS=2.52386;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55554;QR=344777;RO=9627;RPL=1554;RPP=3377.48;RPPR=20907.8;RPR=0;RUN=1;SAF=0;SAP=3377.48;SAR=1554;SRF=0;SRP=20907.8;SRR=9627;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.554	0/0:176:176,0:176:6300:0:0:0,-52.9813,-567.093	0/0:221:221,0:221:7912:0:0:0,-66.5276,-712.105	0/0:281:281,0:281:10056:0:0:0,-84.5894,-904.975	0/1:114:54,60:54:1936:60:2141:-158.639,0,-140.199	0/1:101:61,40:61:2173:40:1436:-99.1336,0,-165.431	0/1:166:89,77:89:3192:77:2737:-196.603,0,-237.532	0/0:129:129,0:129:4597:0:0:0,-38.8329,-413.895	0/0:153:153,0:153:5492:0:0:0,-46.0576,-494.405	0/0:129:129,0:129:4632:0:0:0,-38.8329,-417.039	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.607	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:119:60,59:60:2148:59:2104:-153.807,0,-157.765	0/1:106:55,51:55:1953:51:1836:-133.611,0,-144.135	0/1:68:36,32:36:1292:32:1148:-83.1598,0,-96.1137	0/0:90:90,0:90:3214:0:0:0,-27.0927,-289.482	0/1:72:31,41:31:1116:41:1464:-110.382,0,-79.0775	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:183:109,74:109:3912:74:2652:-183.838,0,-297.184	0/1:237:116,121:116:4139:121:4324:-317.993,0,-301.35	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.203	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.088	0/0:161:152,9:152:5452:9:320:0,-19.3235,-461.665	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:310:310,0:310:11092:0:0:0,-93.3193,-998.172	0/0:250:250,0:250:8972:0:0:0,-75.2575,-807.457	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:301:162,139:162:5800:139:4952:-355.22,0,-431.504	0/0:146:146,0:146:5220:0:0:0,-43.9504,-469.939	0/1:131:75,56:75:2696:56:2004:-141.199,0,-203.449	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:228:228,0:228:8164:0:0:0,-68.6348,-734.774	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.768	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:204:204,0:204:7324:0:0:0,-61.4101,-659.207	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:176:113,63:113:4048:63:2248:-149.602,0,-311.526	0/1:105:61,44:61:2188:44:1584:-111.243,0,-165.578	0/1:84:31,53:31:1116:53:1884:-144.552,0,-75.4652	0/0:138:138,0:138:4920:0:0:0,-41.5421,-442.953	0/1:144:73,71:73:2597:71:2548:-186.222,0,-190.629	0/0:195:194,1:194:6944:1:36:0,-55.1026,-621.428	0/0:120:120,0:120:4288:0:0:0,-36.1236,-386.098	0/0:165:165,0:165:5904:0:0:0,-49.6699,-531.47	0/0:151:151,0:151:5400:0:0:0,-45.4555,-486.131	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:236:236,0:236:8464:0:0:0,-71.0431,-761.76	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:185:100,85:100:3588:85:3040:-218.14,0,-267.436	0/0:80:79,1:79:2812:1:36:0,-20.4841,-249.722	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:145:143,2:143:5132:2:72:0,-36.8126,-455.184	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:205:205,0:205:7349:0:0:0,-61.7111,-661.455	0/1:210:102,108:102:3656:108:3856:-284.02,0,-266.027	0/0:81:79,2:79:2832:2:72:0,-17.5467,-248.282	0/0:119:119,0:119:4260:0:0:0,-35.8226,-383.579	0/1:186:93,93:93:3336:93:3328:-243.746,0,-244.465	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:130:130,0:130:4640:0:0:0,-39.1339,-417.764	0/1:82:46,36:46:1644:36:1292:-91.8993,0,-123.564	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:115:64,51:64:2288:51:1824:-129.823,0,-171.563	0/0:253:253,0:253:9060:0:0:0,-76.1606,-815.376	0/0:181:181,0:181:6504:0:0:0,-54.4864,-585.441	0/0:204:204,0:204:7308:0:0:0,-61.4101,-657.77	0/0:126:125,1:125:4476:1:36:0,-34.3315,-399.411	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:178:178,0:178:6360:0:0:0,-53.5833,-572.492	0/1:116:67,49:67:2381:49:1752:-123.045,0,-179.627	0/0:256:256,0:256:9168:0:0:0,-77.0637,-825.092	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:92:91,1:91:3252:1:36:0,-24.0965,-289.303	0/0:146:145,1:145:5192:1:36:0,-40.3521,-463.821	0/1:41:18,23:18:644:23:824:-62.1411,0,-45.9484	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:92:92,0:92:3299:0:0:0,-27.6948,-297.128	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/1:132:78,54:78:2795:54:1932:-134.421,0,-212.053	0/1:70:28,42:28:1004:42:1496:-113.862,0,-69.6038	0/0:198:198,0:198:7104:0:0:0,-59.6039,-639.417	0/0:135:135,0:135:4852:0:0:0,-40.639,-436.832
chr02	17471058	.	C	T	8712.91	PASS	AB=0.521141;ABP=6.95824;AC=26;AF=0.141304;AN=184;AO=542;CIGAR=1X;DP=4095;DPB=4095;DPRA=1.03228;EPP=1179.95;EPPR=7713.91;GTI=2;LEN=1;MEANALT=1;MQM=59.8561;MQMR=59.964;NS=92;NUMALT=1;ODDS=1.40706;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=19188;QR=125285;RO=3551;RPL=542;RPP=1179.95;RPPR=7713.91;RPR=0;RUN=1;SAF=542;SAP=1179.95;SAR=0;SRF=3551;SRP=7713.91;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:63:61,2:61:2112:2:72:0,-15.0004,-186.381	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:17:10,7:10:336:7:248:-17.5467,0,-25.4457	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.0867	0/0:58:58,0:58:1977:0:0:0,-17.4597,-178.196	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:69:69,0:69:2436:0:0:0,-20.7711,-219.479	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.295	0/1:49:26,23:26:919:23:824:-59.7328,0,-68.2757	0/1:67:37,30:37:1302:30:1037:-73.4677,0,-97.3108	0/1:40:24,16:24:841:16:567:-39.3195,0,-63.9652	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:73:37,36:37:1279:36:1275:-93.0771,0,-93.4293	0/1:73:38,35:38:1338:35:1252:-91.0099,0,-98.7433	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6397	0/0:36:36,0:36:1266:0:0:0,-10.8371,-114.241	0/0:19:18,1:18:644:1:36:0,-2.12129,-54.6923	0/0:26:26,0:26:912:0:0:0,-7.82678,-82.3931	0/0:111:111,0:111:3918:0:0:0,-33.4143,-352.812	0/0:79:78,1:78:2752:1:36:0,-20.1831,-244.324	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:44:43,1:43:1510:1:36:0,-9.64704,-132.593	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.277	0/1:59:37,22:37:1316:22:779:-52.6713,0,-100.981	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:139:139,0:139:4903:0:0:0,-41.8432,-441.376	0/0:58:58,0:58:2058:0:0:0,-17.4597,-185.49	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	.:.:.:.:.:.:.:.	0/0:48:48,0:48:1692:0:0:0,-14.4494,-152.563	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/1:36:14,22:14:480:22:788:-60.4077,0,-32.6868	0/1:62:30,32:30:1043:32:1115:-81.9899,0,-75.515	0/1:55:24,31:24:836:31:1075:-80.4979,0,-58.9981	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5607	0/1:34:14,20:14:492:20:712:-54.1716,0,-34.3773	0/0:48:48,0:48:1661:0:0:0,-14.4494,-149.772	0/0:47:47,0:47:1645:0:0:0,-14.1484,-148.336	0/0:62:61,0:61:2172:0:0:0,-18.3628,-195.387	0/0:45:45,0:45:1564:0:0:0,-13.5463,-141.048	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:55:24,31:24:860:31:1094:-82.2116,0,-61.1652	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	.:.:.:.:.:.:.:.	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:63:63,0:63:2212:0:0:0,-18.9649,-199.343	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:124:124,0:124:4331:0:0:0,-37.3277,-389.947	0/1:63:21,42:21:725:42:1472:-113.807,0,-46.6026	0/0:41:40,1:40:1423:1:36:0,-8.74395,-124.768	0/0:17:16,0:16:559:0:0:0,-4.81648,-50.2784	0/1:53:31,22:31:1108:22:775:-54.1166,0,-84.0764	0/0:74:74,0:74:2599:0:0:0,-22.2762,-234.158	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6003	0/0:21:21,0:21:717:0:0:0,-6.32163,-64.8458	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:61:27,34:27:956:34:1216:-91.3837,0,-67.9929	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:107:107,0:107:3806:0:0:0,-32.2102,-342.739	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/1:21:5,16:5:176:16:572:-45.4918,0,-9.86339	0/0:85:82,3:82:2857:3:108:0,-15.5124,-247.293	0/0:47:47,0:47:1633:0:0:0,-14.1484,-147.253	0/0:64:64,0:64:2256:0:0:0,-19.2659,-203.301	0/0:37:37,0:37:1305:0:0:0,-11.1381,-117.749	0/0:114:114,0:114:4023:0:0:0,-34.3174,-362.261	0/1:17:4,13:4:144:13:464:-36.98,0,-8.19611	0/0:52:52,0:52:1832:0:0:0,-15.6536,-165.074	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:20:20,0:20:689:0:0:0,-6.0206,-62.3285	0/1:78:39,39:39:1387:39:1383:-101.288,0,-101.648	0/1:61:19,42:19:663:42:1504:-117.292,0,-41.6306	0/0:81:81,0:81:2805:0:0:0,-24.3834,-252.689	0/0:104:103,1:103:3624:1:36:0,-27.7088,-322.765
chr02	17549400	.	TTG	TTC,CTC	235303	PASS	AB=0.503647,0.49223;ABP=3.37462,4.66387;AC=157,29;AF=0.844086,0.155914;AN=186;AO=9113,1563;CIGAR=2M1X,1X1M1X;DP=10713;DPB=10713.7;DPRA=0,1.05388;EPP=19670.2,3353.73;EPPR=0;GTI=1;LEN=1,3;MEANALT=1.76344,2.33333;MQM=59.9765,59.8906;MQMR=0;NS=93;NUMALT=2;ODDS=5.24573;PAIRED=0,0;PAIREDR=0;PAO=0.5,1;PQA=0,36;PQR=0;PRO=0.5;QA=323513,54593;QR=0;RO=0;RPL=9095,1557;RPP=19635.6,3345.11;RPPR=0;RPR=18,6;RUN=1,1;SAF=9107,1562;SAP=19739.6,3388.34;SAR=6,1;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:81:0,81,0:0:0:81,0:2865,0:-258.087,-24.3834,0,-258.087,-24.3834,-258.087	1/1:115:0,114,0:0:0:114,0:4076,0:-366.744,-34.3174,0,-366.744,-34.3174,-366.744	1/1:144:0,144,0:0:0:144,0:5106,0:-459.685,-43.3483,0,-459.685,-43.3483,-459.685	1/1:272:0,272,0:0:0:272,0:9649,0:-868.285,-81.8802,0,-868.285,-81.8802,-868.285	1/2:60:0,32,28:0:0:32,28:1127,976:-171.477,-79.7224,-70.0894,-92.1045,0,-83.6756	1/2:19:0,4,14:0:0:4,14:140,496:-51.7903,-40.4006,-39.1965,-11.3826,0,-7.1682	1/2:187:0,108,79:0:0:108,79:3814,2760:-535.456,-224.86,-192.348,-310.948,0,-287.166	1/1:209:0,208,0:0:0:208,0:7333,0:-659.347,-62.6142,0,-659.347,-62.6142,-659.347	1/1:134:0,134,0:0:0:134,0:4719,0:-424.872,-40.338,0,-424.872,-40.338,-424.872	1/1:117:0,117,0:0:0:117,0:4156,0:-374.135,-35.2205,0,-374.135,-35.2205,-374.135	1/1:85:0,85,0:0:0:85,0:2988,0:-269.15,-25.5876,0,-269.15,-25.5876,-269.15	1/1:162:0,162,0:0:0:162,0:5674,0:-510.777,-48.7669,0,-510.777,-48.7669,-510.777	1/1:114:0,113,0:0:0:113,0:4007,0:-360.46,-34.0164,0,-360.46,-34.0164,-360.46	1/2:69:0,35,33:0:0:35,33:1226,1141:-192.458,-92.7004,-82.1643,-99.7469,0,-89.8129	1/2:101:0,47,54:0:0:47,54:1666,1929:-293.349,-157.628,-143.479,-136.077,0,-119.822	1/2:83:0,34,49:0:0:34,49:1212,1715:-238.681,-139.883,-129.648,-99.1513,0,-84.4008	1/1:46:0,46,0:0:0:46,0:1607,0:-144.916,-13.8474,0,-144.916,-13.8474,-144.916	1/2:51:0,33,18:0:0:33,18:1173,643:-148.367,-52.7816,-42.8476,-95.9416,0,-90.523	1/1:60:0,59,0:0:0:59,0:2124,0:-191.147,-17.7608,0,-191.147,-17.7608,-191.147	1/2:354:0,177,173:0:0:177,173:6297,6016:-1002.39,-489.23,-435.948,-513.262,0,-461.184	1/2:180:0,79,100:0:0:79,100:2804,3456:-509.371,-280.904,-257.122,-228.571,0,-198.468	1/1:137:0,137,0:0:0:137,0:4871,0:-438.546,-41.2411,0,-438.546,-41.2411,-438.546	1/1:155:0,155,0:0:0:155,0:5516,0:-496.567,-46.6597,0,-496.567,-46.6597,-496.567	1/2:87:0,76,11:0:0:76,11:2705,394:-252.947,-32.4902,-9.6119,-220.815,0,-217.503	1/1:113:0,112,0:0:0:112,0:4012,0:-360.998,-33.7154,0,-360.998,-33.7154,-360.998	1/1:286:0,284,1:0:0:284,1:10143,36:-912.413,-85.4925,0,-909.476,-82.5551,-909.175	1/1:298:0,296,0:0:0:296,0:10561,0:-950.047,-89.1049,0,-950.047,-89.1049,-950.047	1/1:49:0,49,0:0:0:49,0:1752,0:-157.964,-14.7505,0,-157.964,-14.7505,-157.964	1/2:351:0,164,187:0:0:164,187:5849,6522:-1007.59,-530.784,-481.415,-477.154,0,-420.861	1/1:85:0,83,0:0:0:83,0:2950,0:-265.413,-24.9855,0,-265.413,-24.9855,-265.413	1/2:101:0,55,46:0:0:55,46:1968,1611:-291.903,-131.419,-114.862,-160.838,0,-146.991	1/1:19:0,19,0:0:0:19,0:668,0:-60.4457,-5.71957,0,-60.4457,-5.71957,-60.4457	1/1:42:0,42,0:0:0:42,0:1485,0:-133.943,-12.6433,0,-133.943,-12.6433,-133.943	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:29:0,15,14:0:0:15,14:532,494:-83.9225,-40.5784,-36.063,-43.6976,0,-39.4832	1/1:23:0,22,1:0:0:22,1:780,36:-70.1634,-6.62266,0,-67.2258,-3.32542,-66.9248	1/1:244:0,243,1:0:0:243,1:8568,36:-770.763,-73.1503,0,-767.825,-69.853,-767.524	1/1:114:0,114,0:0:0:114,0:4045,0:-364.239,-34.3174,0,-364.239,-34.3174,-364.239	1/1:65:0,65,0:0:0:65,0:2298,0:-207.079,-19.567,0,-207.079,-19.567,-207.079	.:.:.:.:.:.:.:.	1/1:121:0,118,0:0:0:118,0:4163,0:-374.561,-35.5215,0,-374.561,-35.5215,-374.561	1/1:58:0,58,0:0:0:58,0:2067,0:-186.3,-17.4597,0,-186.3,-17.4597,-186.3	1/2:104:0,67,37:0:0:67,37:2400,1299:-301.807,-106.073,-85.9036,-196.088,0,-184.95	1/2:75:0,33,42:0:0:33,42:1188,1479:-217.699,-120.761,-110.827,-97.2946,0,-84.6513	1/2:61:0,25,34:0:0:25,34:856,1151:-162.895,-93.4086,-85.8829,-69.5774,0,-59.3424	1/1:162:0,159,0:0:0:159,0:5682,0:-511.228,-47.8638,0,-511.228,-47.8638,-511.228	1/2:105:0,61,44:0:0:61,44:2173,1500:-299.166,-122.041,-103.678,-177.473,0,-164.228	1/1:228:0,226,1:0:0:226,1:7997,36:-719.472,-68.0328,0,-716.534,-65.0204,-716.233	1/1:142:0,142,0:0:0:142,0:5062,0:-455.726,-42.7463,0,-455.726,-42.7463,-455.726	1/1:158:0,158,0:0:0:158,0:5625,0:-506.373,-47.5627,0,-506.373,-47.5627,-506.373	1/1:201:0,201,0:0:0:201,0:7140,0:-642.663,-60.507,0,-642.663,-60.507,-642.663	1/2:13:0,2,11:0:0:2,11:68,394:-38.0032,-32.4902,-31.8881,-5.85565,0,-2.54432	1/1:181:0,181,0:0:0:181,0:6441,0:-579.777,-54.4864,0,-579.777,-54.4864,-579.777	1/1:91:0,91,0:0:0:91,0:3251,0:-292.81,-27.3937,0,-292.81,-27.3937,-292.81	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/2:156:0,61,95:0:0:61,95:2168,3318:-446.914,-270.242,-251.879,-177.024,0,-148.426	1/1:49:0,49,0:0:0:49,0:1752,0:-157.963,-14.7505,0,-157.963,-14.7505,-157.963	1/2:11: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chr02	17550204	.	T	G	103224	PASS	AB=0.528853;ABP=13.6613;AC=160;AF=0.851064;AN=188;AO=4679;CIGAR=1X;DP=5382;DPB=5382;DPRA=0;EPP=10119.9;EPPR=1525.21;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9981;MQMR=59.8745;NS=94;NUMALT=1;ODDS=2.96398;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166686;QR=25042;RO=701;RPL=5;RPP=10119.9;RPPR=1525.21;RPR=4674;RUN=1;SAF=4679;SAP=10163.3;SAR=0;SRF=701;SRP=1525.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:71:0,71:0:0:71:2479:-223.36,-21.3731,0	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	1/1:146:0,146:0:0:146:5202:-468.316,-43.9504,0	0/1:34:14,20:14:500:20:720:-54.8938,0,-35.1012	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.2161	0/1:107:48,59:48:1720:59:2078:-155.076,0,-122.875	1/1:118:3,115:3:93:115:4120:-362.307,-26.8448,0	1/1:73:0,73:0:0:73:2609:-235.056,-21.9752,0	1/1:62:0,62:0:0:62:2212:-199.344,-18.6639,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:29:17,12:17:608:12:417:-29.1303,0,-46.3222	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/1:15:12,3:12:428:3:108:-5.55972,0,-34.3434	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:37:21,16:21:756:16:576:-41.0369,0,-57.2291	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:132:60,72:60:2148:72:2560:-190.912,0,-153.838	0/1:71:35,36:35:1239:36:1296:-95.5708,0,-90.4405	1/1:76:0,76:0:0:76:2707:-243.873,-22.8783,0	1/1:40:0,40:0:0:40:1402:-126.473,-12.0412,0	1/1:53:2,51:2:72:51:1794:-154.902,-9.11787,0	1/1:45:0,45:0:0:45:1602:-144.469,-13.5464,0	1/1:244:0,243:0:0:243:8619:-775.344,-73.1503,0	1/1:168:0,168:0:0:168:5978:-538.125,-50.573,0	1/1:14:0,14:0:0:14:477:-43.2531,-4.21442,0	0/1:183:73,110:73:2601:110:3915:-297.454,0,-179.224	1/1:80:0,80:0:0:80:2853:-257.007,-24.0824,0	0/1:81:36,45:36:1271:45:1608:-120.627,0,-90.2977	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:19:0,19:0:0:19:665:-60.1728,-5.71957,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:108:0,108:0:0:108:3861:-347.684,-32.5112,0	1/1:130:0,130:0:0:130:4661:-419.649,-39.1339,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:81:0,81:0:0:81:2885:-259.885,-24.3834,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:48:9,39:9:324:39:1381:-110.137,0,-15.0564	0/1:26:14,12:14:504:12:428:-31.032,0,-37.8713	0/1:33:13,20:13:468:20:720:-55.1948,0,-32.5223	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	0/1:69:34,35:34:1224:35:1237:-90.8612,0,-89.6602	1/1:107:0,107:0:0:107:3778:-340.218,-32.2102,0	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	1/1:73:0,72:0:0:72:2568:-231.008,-21.6742,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:49:25,24:25:878:24:856:-62.6106,0,-64.5854	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	1/1:93:1,92:1:36:92:3289:-292.63,-24.3975,0	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	1/1:129:0,129:0:0:129:4597:-413.895,-38.8329,0	0/1:123:57,66:57:2036:66:2364:-175.992,0,-146.457	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:64:0,64:0:0:64:2247:-202.489,-19.2659,0	0/1:97:51,46:51:1824:46:1648:-119.409,0,-135.241	1/1:75:1,74:1:36:74:2656:-235.687,-18.979,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:62:34,28:34:1220:28:1008:-72.3725,0,-91.4406	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:74:0,74:0:0:74:2631:-237.037,-22.2762,0	0/1:32:12,20:12:428:20:720:-55.4958,0,-29.2258	1/1:103:0,103:0:0:103:3629:-326.811,-31.0061,0	1/1:104:0,104:0:0:104:3691:-332.39,-31.3071,0	1/1:86:0,86:0:0:86:3069:-276.437,-25.8886,0	1/1:86:0,86:0:0:86:3081:-277.516,-25.8886,0	1/1:25:0,25:0:0:25:885:-79.9665,-7.52575,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	0/1:72:25,47:25:896:47:1665:-128.461,0,-59.2862	1/1:184:0,184:0:0:184:6570:-591.38,-55.3895,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	1/1:27:0,27:0:0:27:957:-86.4439,-8.12781,0	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:21:9,12:9:324:12:408:-30.7225,0,-23.1842	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:37:0,37:0:0:37:1308:-118.019,-11.1381,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:51:27,24:27:964:24:845:-61.0146,0,-71.7243	0/1:27:19,8:19:680:8:288:-18.1396,0,-53.4014	1/1:42:0,42:0:0:42:1472:-132.77,-12.6433,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0
chr02	17641272	.	C	T	430845	PASS	AB=0.506946;ABP=5.6949;AC=158;AF=0.840426;AN=188;AO=18400;CIGAR=1X;DP=21599;DPB=21599;DPRA=0;EPP=39958.1;EPPR=6938.69;GTI=0;LEN=1;MEANALT=1.05319;MQM=43.8399;MQMR=45.252;NS=94;NUMALT=1;ODDS=5.56589;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=654922;QR=112891;RO=3194;RPL=8646;RPP=147.893;RPPR=135.83;RPR=9754;RUN=1;SAF=8646;SAP=147.893;SAR=9754;SRF=1376;SRP=135.83;SRR=1818;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:116:0,116:0:0:116:4123:-308.593,-34.9195,0	1/1:363:1,362:1:36:362:12893:-1036.67,-106.995,0	1/1:412:0,412:0:0:412:14727:-1004.38,-124.024,0	1/1:487:3,484:3:108:484:17280:-1272,-137.413,0	0/1:198:86,112:86:3084:112:3981:-247.546,0,-180.754	0/1:71:26,45:26:915:45:1595:-109.705,0,-53.814	0/1:253:137,116:137:4861:116:4143:-260.042,0,-318.418	1/1:415:0,415:0:0:415:14696:-1098.85,-124.927,0	1/1:287:1,286:1:36:286:10178:-748.386,-84.1167,0	1/1:159:0,159:0:0:159:5656:-448.461,-47.8638,0	1/1:145:0,145:0:0:145:5175:-404.596,-43.6494,0	1/1:218:1,217:1:36:217:7701:-532.308,-62.0263,0	1/1:173:0,173:0:0:173:6171:-457.7,-52.0782,0	0/1:146:67,79:67:2370:79:2799:-181.098,0,-138.51	0/1:172:77,95:77:2746:95:3393:-213.989,0,-162.373	0/1:152:67,85:67:2345:85:3023:-175.832,0,-130.484	1/1:143:0,143:0:0:143:5083:-396.833,-43.0473,0	0/1:130:55,75:55:1927:75:2663:-177.696,0,-117.589	1/1:101:1,100:1:36:100:3531:-257.672,-26.8058,0	0/1:599:307,292:307:10951:292:10434:-654.892,0,-731.514	0/1:357:183,174:183:6480:174:6208:-384.057,0,-394.749	1/1:156:0,156:0:0:156:5542:-452.668,-46.9607,0	1/1:262:0,262:0:0:262:9330:-709.403,-78.8699,0	1/1:310:11,299:11:379:299:10629:-863.529,-62.3632,0	1/1:248:0,248:0:0:248:8836:-668.062,-74.6554,0	1/1:641:2,638:2:72:638:22730:-1830.29,-186.182,0	1/1:450:0,450:0:0:450:16099:-1206.41,-135.464,0	1/1:84:0,84:0:0:84:2981:-238.612,-25.2865,0	0/1:708:373,335:373:13181:335:11949:-748.873,0,-870.64	1/1:217:0,216:0:0:216:7663:-595.439,-65.0225,0	0/1:248:103,145:103:3654:145:5143:-321.142,0,-224.944	1/1:23:0,23:0:0:23:824:-58.1129,-6.92369,0	1/1:21:1,20:1:36:20:699:-44.6502,-3.85472,0	1/1:12:0,12:0:0:12:428:-34.065,-3.61236,0	0/1:17:11,6:11:396:6:216:-8.62571,0,-26.0674	1/1:39:0,39:0:0:39:1404:-84.8059,-11.7402,0	1/1:470:1,469:1:36:469:16686:-1350,-137.886,0	1/1:213:0,213:0:0:213:7559:-602.144,-64.1194,0	1/1:143:0,142:0:0:142:5032:-371.318,-42.7463,0	0/1:15:9,6:9:324:6:212:-10.5886,0,-21.898	1/1:298:0,298:0:0:298:10614:-810.838,-89.7069,0	1/1:92:0,92:0:0:92:3265:-246.642,-27.6948,0	0/1:406:206,200:206:7265:200:7112:-424.494,0,-452.832	0/1:184:87,97:87:3002:97:3451:-224.411,0,-186.591	0/1:191:93,98:93:3224:98:3484:-215.516,0,-208.934	1/1:226:0,226:0:0:226:8079:-643.57,-68.0328,0	0/1:250:99,151:99:3432:151:5361:-332.647,0,-181.893	1/1:467:2,464:2:72:464:16484:-1285.01,-134.789,0	1/1:220:0,220:0:0:220:7765:-631.424,-66.2266,0	1/1:361:0,361:0:0:361:12864:-1037.19,-108.672,0	1/1:399:1,397:1:32:397:14157:-1171.49,-117.402,0	0/1:42:18,24:18:636:24:864:-57.7113,0,-35.0403	1/1:390:0,390:0:0:390:13897:-1002.97,-117.402,0	1/1:82:0,82:0:0:82:2932:-224.667,-24.6845,0	0/1:17:5,12:5:180:12:424:-30.982,0,-9.00684	0/1:353:185,168:185:6499:168:5993:-336.707,0,-368.74	1/1:81:0,81:0:0:81:2900:-217.557,-24.3834,0	0/1:31:14,17:14:492:17:608:-41.4958,0,-30.8925	0/1:23:10,13:10:343:13:464:-30.9411,0,-20.1151	1/1:182:0,182:0:0:182:6479:-497.397,-54.7875,0	1/1:214:0,214:0:0:214:7594:-592.299,-64.4204,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:299:0,299:0:0:299:10622:-871.697,-90.008,0	0/1:369:194,175:194:6881:175:6210:-391.166,0,-457.232	1/1:176:3,173:3:108:173:6146:-476.087,-43.9621,0	1/1:256:0,256:0:0:256:9142:-706.255,-77.0637,0	0/1:335:163,172:163:5759:172:6139:-391.866,0,-358.356	1/1:300:2,298:2:72:298:10641:-779.484,-83.4723,0	1/1:85:0,85:0:0:85:3012:-212.637,-25.5876,0	1/1:135:0,135:0:0:135:4780:-402.663,-40.6391,0	0/1:179:82,97:82:2900:97:3451:-227.389,0,-188.713	1/1:36:0,36:0:0:36:1284:-102.488,-10.8371,0	1/1:139:0,139:0:0:139:4901:-361.575,-41.8432,0	0/1:194:87,107:87:3097:107:3794:-204.381,0,-172.452	1/1:480:0,480:0:0:480:17056:-1277.47,-144.494,0	1/1:418:0,418:0:0:418:14897:-1177.59,-125.831,0	1/1:282:1,281:1:36:281:10004:-757.389,-81.2922,0	1/1:334:1,333:1:36:333:11854:-918.003,-96.9457,0	1/1:47:0,47:0:0:47:1684:-129.231,-14.1484,0	1/1:347:2,345:2:72:345:12310:-926.091,-97.6207,0	0/1:312:157,155:157:5549:155:5510:-283.787,0,-298.968	1/1:512:0,512:0:0:512:18226:-1445.69,-154.127,0	1/1:212:0,212:0:0:212:7574:-619.226,-63.8184,0	1/1:171:0,171:0:0:171:6108:-474.489,-51.4761,0	1/1:221:0,221:0:0:221:7847:-650.752,-66.5276,0	1/1:350:0,350:0:0:350:12423:-1002.18,-105.361,0	0/1:92:51,41:51:1800:41:1468:-74.9542,0,-108.373	1/1:178:0,178:0:0:178:6337:-480.753,-53.5833,0	1/1:178:0,178:0:0:178:6287:-461.35,-53.5833,0	1/1:95:0,95:0:0:95:3387:-243.46,-28.5979,0	0/1:185:87,98:87:3103:98:3440:-205.799,0,-174.945	0/1:178:120,58:120:4256:58:2075:-109.087,0,-284.431	1/1:338:1,337:1:36:337:12030:-906.091,-98.1499,0	1/1:275:0,275:0:0:275:9789:-779.438,-82.7833,0
chr02	17641308	.	T	C	31144.8	PASS	AB=0.50576;ABP=4.0609;AC=30;AF=0.159574;AN=188;AO=1873;CIGAR=1X;DP=11877;DPB=11877;DPRA=1.17588;EPP=4070.18;EPPR=21722.1;GTI=0;LEN=1;MEANALT=1.02273;MQM=59.9728;MQMR=59.9278;NS=94;NUMALT=1;ODDS=4.54276;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66811;QR=358736;RO=10002;RPL=1873;RPP=4070.18;RPPR=21722.1;RPR=0;RUN=1;SAF=0;SAP=4070.18;SAR=1873;SRF=0;SRP=21722.1;SRR=10002;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:64,1:64:2300:1:36:0,-15.9691,-203.663	0/0:262:262,0:262:9400:0:0:0,-78.8699,-845.858	0/0:141:141,0:141:5045:0:0:0,-42.4452,-453.876	0/0:167:165,2:165:5916:2:60:0,-44.5729,-526.801	0/1:114:62,52:62:2224:52:1872:-134.442,0,-166.106	0/1:52:34,18:34:1224:18:636:-41.9145,0,-94.8131	0/1:159:75,84:75:2684:84:3016:-223.807,0,-193.941	0/0:231:231,0:231:8273:0:0:0,-69.5379,-744.576	0/0:147:147,0:147:5276:0:0:0,-44.2514,-474.963	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.1	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.669	0/0:95:95,0:95:3389:0:0:0,-28.5978,-305.205	0/1:89:53,36:53:1908:36:1279:-88.6208,0,-145.205	0/1:87:48,39:48:1728:39:1376:-97.9472,0,-129.616	0/1:65:35,30:35:1260:30:1054:-75.6022,0,-94.1385	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.691	0/1:98:56,42:56:2012:42:1478:-103.812,0,-151.852	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/1:397:175,222:175:6258:222:7937:-594.844,0,-443.784	0/1:215:109,105:109:3908:105:3748:-272.741,0,-287.132	0/0:92:92,0:92:3293:0:0:0,-27.6948,-296.587	0/0:111:111,0:111:3977:0:0:0,-33.4143,-358.118	0/0:252:245,7:245:8812:7:252:0,-52.8306,-769.885	0/0:120:120,0:120:4305:0:0:0,-36.1236,-387.623	0/0:358:354,4:354:12681:4:142:0,-94.6984,-1128.02	0/0:220:220,0:220:7882:0:0:0,-66.2266,-709.356	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.436	0/1:406:179,227:179:6440:227:8129:-609.405,0,-457.463	0/0:126:126,0:126:4512:0:0:0,-37.9298,-406.246	0/1:136:68,68:68:2436:68:2413:-176.486,0,-178.554	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:263:263,0:263:9452:0:0:0,-79.1709,-850.59	0/0:147:147,0:147:5284:0:0:0,-44.2514,-475.641	0/0:74:74,0:74:2645:0:0:0,-22.2762,-238.293	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:154:154,0:154:5521:0:0:0,-46.3586,-497.01	0/0:45:44,1:44:1584:1:36:0,-9.94852,-139.254	0/1:241:112,129:112:4016:129:4604:-341.977,0,-289.075	0/1:110:60,50:60:2144:50:1780:-127.368,0,-160.114	0/1:119:55,64:55:1980:64:2248:-166.742,0,-142.634	0/0:107:107,0:107:3852:0:0:0,-32.2102,-346.873	0/1:144:91,53:91:3264:53:1887:-126.756,0,-250.631	0/0:242:242,0:242:8665:0:0:0,-72.8493,-779.823	0/0:143:143,0:143:5136:0:0:0,-43.0473,-462.379	0/0:225:225,0:225:8096:0:0:0,-67.7317,-728.65	0/0:264:264,0:264:9484:0:0:0,-79.4719,-853.383	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/0:192:192,0:192:6904:0:0:0,-57.7978,-621.422	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6582	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/1:144:75,69:75:2696:69:2445:-176.957,0,-199.535	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.125	0/0:114:113,1:113:4060:1:28:0,-31.5178,-362.785	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:186:186,0:186:6684:0:0:0,-55.9916,-601.632	0/1:240:108,132:108:3873:132:4732:-353.791,0,-276.514	0/0:113:111,2:111:3954:2:72:0,-27.1797,-349.212	0/0:124:124,0:124:4437:0:0:0,-37.3277,-399.499	0/1:199:107,92:107:3852:92:3280:-235.516,0,-286.696	0/0:105:103,2:103:3681:2:72:0,-24.7714,-324.626	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:117:117,0:117:4212:0:0:0,-35.2205,-379.258	0/1:113:57,56:57:2048:56:2000:-146.257,0,-150.575	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8757	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.456	0/1:87:41,46:41:1468:46:1644:-122.059,0,-106.182	0/0:236:236,0:236:8461:0:0:0,-71.0431,-761.468	0/0:233:231,2:231:8292:2:72:0,-63.3041,-739.18	0/0:165:164,1:164:5896:1:36:0,-46.0717,-527.147	0/0:214:213,1:213:7633:1:36:0,-60.8221,-683.384	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0829	0/0:186:184,2:184:6600:2:72:0,-49.1549,-587.149	0/1:120:56,64:56:2001:64:2288:-170.058,0,-144.238	0/0:286:284,2:284:10156:2:72:0,-79.2587,-907.083	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.596	0/0:82:81,0:81:2904:0:0:0,-24.3834,-261.314	0/0:159:159,0:159:5716:0:0:0,-47.8638,-514.508	0/0:219:219,0:219:7856:0:0:0,-65.9256,-707.056	0/1:45:16,29:16:576:29:1044:-80.7285,0,-38.6286	0/0:104:104,0:104:3712:0:0:0,-31.3071,-334.194	0/0:91:90,1:90:3236:1:36:0,-23.7959,-287.863	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/1:93:53,40:53:1904:40:1432:-101.182,0,-143.641	0/1:96:31,65:31:1116:65:2319:-180.071,0,-71.8524	0/0:139:139,0:139:4996:0:0:0,-41.8432,-449.783	0/0:162:162,0:162:5816:0:0:0,-48.7669,-523.551
chr02	17641310	.	G	T	213105	PASS	AB=0.488554;ABP=7.08651;AC=158;AF=0.840426;AN=188;AO=9755;CIGAR=1X;DP=11614;DPB=11614;DPRA=0;EPP=21185.7;EPPR=4018.06;GTI=0;LEN=1;MEANALT=1.10638;MQM=59.9293;MQMR=59.9832;NS=94;NUMALT=1;ODDS=4.62758;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=347645;QR=65891;RO=1849;RPL=9755;RPP=21185.7;RPPR=4018.06;RPR=0;RUN=1;SAF=0;SAP=21185.7;SAR=9755;SRF=0;SRP=4018.06;SRR=1849;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:257:0,257:0:0:257:9163:-824.547,-77.3647,0	1/1:138:0,138:0:0:138:4908:-441.815,-41.5421,0	1/1:158:1,157:1:36:157:5583:-498.996,-43.9645,0	0/1:109:49,60:49:1752:60:2130:-159.156,0,-125.152	0/1:53:19,34:19:676:34:1209:-93.1604,0,-45.2134	0/1:157:83,74:83:2976:74:2624:-189.147,0,-220.811	1/1:221:0,221:0:0:221:7872:-708.51,-66.5276,0	1/1:139:0,139:0:0:139:4978:-448.167,-41.8432,0	1/1:86:0,86:0:0:86:3064:-275.99,-25.8886,0	1/1:72:1,71:1:36:71:2524:-223.813,-18.0759,0	1/1:81:1,80:1:32:80:2858:-254.258,-21.1841,0	1/1:95:0,94:0:0:94:3351:-301.447,-28.2968,0	0/1:88:35,53:35:1248:53:1891:-143.977,0,-86.1342	0/1:85:38,46:38:1360:46:1644:-122.602,0,-97.0543	0/1:67:32,35:32:1148:35:1247:-92.3651,0,-83.4608	1/1:97:0,97:0:0:97:3449:-310.622,-29.1999,0	0/1:98:42,56:42:1495:56:2003:-151.042,0,-105.343	1/1:50:0,49:0:0:49:1743:-156.793,-14.7505,0	0/1:395:223,172:223:7964:172:6135:-433.326,0,-597.879	0/1:215:105,110:105:3748:110:3916:-287.913,0,-272.8	1/1:89:0,89:0:0:89:3182:-286.604,-26.7917,0	1/1:102:0,102:0:0:102:3648:-328.525,-30.7051,0	1/1:246:8,238:8:284:238:8487:-737.914,-48.1583,0	1/1:118:1,117:1:36:117:4177:-372.512,-31.9233,0	1/1:346:1,345:1:36:345:12194:-1093.66,-100.558,0	1/1:219:0,219:0:0:219:7800:-701.99,-65.9256,0	1/1:55:0,55:0:0:55:1940:-174.875,-16.5567,0	0/1:395:221,172:221:7883:172:6140:-434.036,0,-590.835	1/1:122:0,122:0:0:122:4308:-387.898,-36.7257,0	0/1:134:69,65:69:2472:65:2324:-169.082,0,-182.396	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:255:0,255:0:0:255:9128:-821.449,-76.7627,0	1/1:144:0,144:0:0:144:5129:-461.701,-43.3483,0	1/1:72:0,72:0:0:72:2563:-230.875,-21.6742,0	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	1/1:154:1,153:1:36:153:5432:-485.376,-42.7694,0	1/1:44:0,44:0:0:44:1553:-140.059,-13.2453,0	0/1:235:128,107:128:4567:107:3794:-270.916,0,-340.454	0/1:109:48,61:48:1694:61:2162:-162.034,0,-119.932	0/1:116:62,53:62:2157:53:1875:-134.032,0,-159.419	1/1:102:0,102:0:0:102:3629:-326.815,-30.7051,0	0/1:138:52,85:52:1848:85:3029:-231.239,0,-124.997	1/1:235:0,235:0:0:235:8323:-749.067,-70.7421,0	1/1:141:0,141:0:0:141:5025:-452.397,-42.4452,0	1/1:222:0,222:0:0:222:7917:-712.557,-66.8287,0	1/1:257:0,257:0:0:257:9199:-827.83,-77.3647,0	0/1:21:6,15:6:216:15:532:-41.8915,0,-13.4689	1/1:185:0,185:0:0:185:6632:-596.956,-55.6906,0	1/1:28:0,28:0:0:28:1000:-90.3082,-8.42884,0	0/1:13:3,10:3:104:10:356:-28.4679,0,-5.78942	0/1:139:69,70:69:2464:70:2508:-184.128,0,-180.171	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:95:0,95:0:0:95:3395:-305.764,-28.5979,0	1/1:113:0,113:0:0:113:4024:-362.349,-34.0164,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:178:0,178:0:0:178:6334:-570.156,-53.5833,0	0/1:237:133,104:133:4740:104:3716:-263.297,0,-355.409	1/1:111:2,109:2:68:109:3853:-340.511,-26.9566,0	1/1:120:0,120:0:0:120:4287:-386.002,-36.1236,0	0/1:192:89,103:89:3172:103:3689:-274.223,0,-227.908	1/1:104:2,102:2:68:102:3644:-321.678,-24.8494,0	1/1:27:0,27:0:0:27:951:-85.9043,-8.12781,0	1/1:115:0,115:0:0:115:4120:-370.984,-34.6185,0	0/1:108:55,53:55:1956:53:1908:-139.486,0,-143.804	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:68:0,68:0:0:68:2405:-216.661,-20.47,0	0/1:88:48,40:48:1712:40:1417:-101.29,0,-127.875	1/1:234:0,234:0:0:234:8363:-752.658,-70.441,0	1/1:224:0,223:0:0:223:7897:-710.132,-67.1297,0	1/1:163:1,162:1:36:162:5757:-514.65,-45.4696,0	1/1:210:1,209:1:36:209:7457:-667.559,-59.618,0	1/1:27:0,27:0:0:27:960:-86.7159,-8.12781,0	1/1:177:2,175:2:72:175:6239:-554.719,-46.4456,0	0/1:120:64,56:64:2276:56:2012:-145.23,0,-168.979	1/1:280:0,279:0:0:279:9974:-897.193,-83.9874,0	1/1:133:0,133:0:0:133:4760:-428.548,-40.037,0	1/1:83:0,83:0:0:83:2959:-266.542,-24.9855,0	1/1:156:0,155:0:0:155:5542:-498.5,-46.6597,0	1/1:218:0,218:0:0:218:7798:-701.84,-65.6245,0	0/1:43:28,15:28:1004:15:540:-35.9922,0,-77.7316	1/1:103:0,103:0:0:103:3694:-332.576,-31.0061,0	1/1:91:0,91:0:0:91:3255:-293.171,-27.3937,0	1/1:34:0,34:0:0:34:1207:-108.934,-10.235,0	0/1:90:39,51:39:1392:51:1814:-136.448,0,-98.4863	0/1:95:64,31:64:2267:31:1099:-70.6212,0,-175.695	1/1:137:0,137:0:0:137:4870:-438.454,-41.2411,0	1/1:158:0,158:0:0:158:5643:-507.991,-47.5627,0
chr02	17969660	.	A	G	21141.5	PASS	AB=0.50122;ABP=3.03679;AC=28;AF=0.148936;AN=188;AO=1045;CIGAR=1X;DP=7529;DPB=7529;DPRA=1.0267;EPP=1131.7;EPPR=6549.73;GTI=1;LEN=1;MEANALT=1.07692;MQM=59.9378;MQMR=59.9335;NS=94;NUMALT=1;ODDS=6.44805;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37108;QR=231565;RO=6480;RPL=1006;RPP=1946.09;RPPR=11573.3;RPR=39;RUN=1;SAF=115;SAP=1383.25;SAR=930;SRF=730;SRP=8447.76;SRR=5750;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:56:56,0:56:1986:0:0:0,-16.8577,-179.013	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/0:268:267,1:267:9567:1:36:0,-77.0778,-857.385	0/0:217:217,0:217:7737:0:0:0,-65.3235,-696.356	0/1:29:7,22:7:252:22:771:-60.9804,0,-14.2991	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:45:25,20:25:896:20:712:-50.8597,0,-67.414	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.54	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.389	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:116:116,0:116:4155:0:0:0,-34.9195,-374.13	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/1:37:17,20:17:579:20:701:-52.2736,0,-41.2902	0/1:64:34,30:34:1224:30:1062:-76.6238,0,-91.2011	0/1:52:27,25:27:968:25:877:-63.5916,0,-71.7838	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/1:24:11,13:11:383:13:460:-34.5107,0,-27.5785	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/1:130:60,70:60:2152:70:2490:-185.218,0,-154.684	0/1:99:45,54:45:1620:54:1918:-143.088,0,-116.283	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/0:100:99,1:99:3530:1:32:0,-26.9037,-314.624	0/0:37:35,2:35:1260:2:72:0,-4.30139,-106.869	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.219	0/0:267:267,0:267:9531:0:0:0,-80.375,-857.694	0/0:187:187,0:187:6686:0:0:0,-56.2926,-601.806	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/1:302:158,143:158:5655:143:5087:-367.007,0,-418.1	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.571	0/1:67:32,35:32:1132:35:1235:-91.2844,0,-82.0196	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:411:411,0:411:14719:0:0:0,-123.723,-1324.44	0/0:69:68,1:68:2427:1:36:0,-17.1728,-215.085	0/0:51:51,0:51:1786:0:0:0,-15.3525,-160.948	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/0:52:52,0:52:1853:0:0:0,-15.6536,-166.918	0/1:132:59,73:59:2115:73:2589:-193.507,0,-150.882	0/1:44:22,22:22:779:22:781:-57.3668,0,-57.1867	0/1:58:36,22:36:1284:22:788:-53.7851,0,-98.4035	0/0:104:103,0:103:3680:0:0:0,-31.0061,-331.19	0/1:107:54,53:54:1944:53:1895:-138.616,0,-143.026	0/0:141:140,1:140:5024:1:36:0,-38.847,-448.707	0/0:73:73,0:73:2594:0:0:0,-21.9752,-233.708	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.143	0/0:172:172,0:172:6139:0:0:0,-51.7772,-552.242	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.48	0/0:49:48,1:48:1716:1:36:0,-11.1522,-151.127	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:140:60,80:60:2148:80:2868:-216.209,0,-151.443	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.735	0/1:15:8,7:8:280:7:248:-18.1487,0,-21.0239	0/1:17:8,9:8:284:9:320:-24.0248,0,-20.768	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:83:82,1:82:2927:1:27:0,-22.2857,-260.965	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:178:178,0:178:6348:0:0:0,-53.5833,-571.412	0/1:90:45,45:45:1612:45:1591:-116.384,0,-118.277	0/0:29:27,2:27:959:2:72:0,-1.89315,-79.7887	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.206	0/1:116:64,52:64:2292:52:1842:-131.131,0,-171.622	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.349	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:162:86,76:86:3064:76:2683:-192.95,0,-227.032	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/1:84:55,29:55:1972:29:1040:-68.6278,0,-152.468	0/0:88:88,0:88:3135:0:0:0,-26.4906,-282.376	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.788	0/0:84:83,1:83:2979:1:32:0,-22.0872,-264.824	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:96:94,1:94:3363:1:36:0,-25.3145,-298.555	0/1:92:46,46:46:1656:46:1640:-120.193,0,-121.634	0/0:155:155,0:155:5556:0:0:0,-46.6596,-500.163	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/0:66:64,2:64:2280:2:72:0,-13.0313,-198.623	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/0:127:127,0:127:4510:0:0:0,-38.2308,-406.031	0/1:27:12,15:12:432:15:536:-40.447,0,-31.0934	0/0:65:65,0:65:2305:0:0:0,-19.5669,-207.71	0/0:83:83,0:83:2937:0:0:0,-24.9855,-264.563	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:48:24,24:24:864:24:846:-62.0084,0,-63.6331	0/1:62:23,39:23:828:39:1389:-106.643,0,-56.1803	0/0:98:96,1:96:3423:1:36:0,-25.8864,-304.757	0/0:108:108,0:108:3865:0:0:0,-32.5112,-348.043
chr02	17969684	.	G	T	129180	PASS	AB=0.492896;ABP=3.81244;AC=160;AF=0.851064;AN=188;AO=5849;CIGAR=1X;DP=6791;DPB=6791;DPRA=24.3297;EPP=12695.3;EPPR=2039.85;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9237;MQMR=59.952;NS=94;NUMALT=1;ODDS=0.769363;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208856;QR=33518;RO=938;RPL=5849;RPP=12704;RPPR=2039.85;RPR=0;RUN=1;SAF=1;SAP=12695.3;SAR=5848;SRF=0;SRP=2039.85;SRR=938;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0	1/1:62:0,62:0:0:62:2171:-195.651,-18.6639,0	1/1:273:1,272:1:32:272:9734:-872.804,-78.9819,0	1/1:224:0,224:0:0:224:8025:-721.24,-67.4307,0	0/1:29:22,7:22:780:7:252:-14.2991,0,-61.7932	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:48:22,26:22:792:26:932:-69.7494,0,-57.1562	1/1:108:0,108:0:0:108:3851:-346.761,-32.5112,0	1/1:85:0,85:0:0:85:3060:-275.486,-25.5876,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:37:0,37:0:0:37:1327:-119.732,-11.1381,0	1/1:120:0,120:0:0:120:4305:-387.621,-36.1236,0	1/1:94:0,94:0:0:94:3365:-303.064,-28.2968,0	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9907	0/1:64:30,34:30:1072:34:1224:-91.2011,0,-77.5256	0/1:55:25,29:25:896:29:1025:-75.9455,0,-64.345	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:131:70,61:70:2500:61:2184:-157.281,0,-185.818	0/1:102:53,49:53:1892:49:1741:-126.261,0,-139.849	1/1:48:0,48:0:0:48:1713:-154.454,-14.4494,0	1/1:99:1,98:1:36:98:3495:-311.129,-26.2037,0	1/1:39:2,37:2:72:37:1320:-112.265,-4.90345,0	1/1:65:0,65:0:0:65:2327:-209.689,-19.567,0	1/1:115:0,115:0:0:115:4112:-370.26,-34.6185,0	1/1:189:0,189:0:0:189:6761:-608.557,-56.8947,0	1/1:41:0,41:0:0:41:1471:-132.686,-12.3422,0	0/1:213:105,108:105:3756:108:3850:-282.574,0,-274.121	1/1:77:0,77:0:0:77:2753:-248.006,-23.1793,0	0/1:67:37,30:37:1324:30:1065:-75.9907,0,-99.2931	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:176:0,176:0:0:176:6320:-568.889,-52.9813,0	1/1:70:0,70:0:0:70:2477:-223.18,-21.0721,0	1/1:52:0,52:0:0:52:1849:-165.909,-15.6536,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:85:0,85:0:0:85:3025:-272.479,-25.5876,0	1/1:51:0,51:0:0:51:1828:-164.744,-15.3525,0	0/1:135:74,61:74:2644:61:2192:-156.906,0,-197.522	0/1:43:21,21:21:743:21:752:-55.0033,0,-54.1905	0/1:57:23,34:23:828:34:1220:-92.9481,0,-57.6854	1/1:68:0,68:0:0:68:2414:-217.513,-20.47,0	0/1:110:54,56:54:1928:56:1997:-146.889,0,-140.683	1/1:140:1,139:1:36:139:4921:-439.441,-38.5459,0	1/1:71:0,71:0:0:71:2556:-230.29,-21.3731,0	1/1:87:0,87:0:0:87:3090:-278.324,-26.1896,0	1/1:115:0,115:0:0:115:4106:-369.693,-34.6185,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:101:0,101:0:0:101:3621:-326.094,-30.404,0	1/1:37:0,37:0:0:37:1302:-117.477,-11.1381,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:142:81,61:81:2892:61:2150:-151.018,0,-217.767	1/1:61:0,61:0:0:61:2183:-196.734,-18.3628,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	1/1:83:1,82:1:36:82:2944:-261.595,-21.3872,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:107:0,107:0:0:107:3831:-344.986,-32.2102,0	0/1:92:47,45:47:1684:45:1620:-118.395,0,-124.146	1/1:30:2,28:2:72:28:999:-83.3884,-2.19418,0	1/1:94:0,94:0:0:94:3318:-298.73,-28.2968,0	0/1:118:51,67:51:1820:67:2393:-180.104,0,-128.56	1/1:82:0,81:0:0:81:2880:-259.072,-24.3834,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:26:13,13:13:464:13:464:-34.2707,0,-34.2707	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:95:0,95:0:0:95:3405:-306.663,-28.5979,0	0/1:89:31,58:31:1112:58:2039:-156.985,0,-73.5997	1/1:90:0,90:0:0:90:3210:-289.12,-27.0927,0	1/1:117:0,117:0:0:117:4173:-375.751,-35.2205,0	1/1:86:1,85:1:36:85:3036:-269.87,-22.2903,0	1/1:73:0,73:0:0:73:2568:-231.364,-21.9752,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:98:1,97:1:32:97:3469:-308.444,-26.3016,0	0/1:91:45,46:45:1604:46:1622:-118.871,0,-117.256	1/1:158:0,158:0:0:158:5661:-509.607,-47.5627,0	1/1:55:0,55:0:0:55:1945:-175.324,-16.5567,0	1/1:66:0,66:0:0:66:2360:-212.657,-19.868,0	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	1/1:127:0,127:0:0:127:4559:-410.439,-38.2308,0	0/1:27:15,12:15:536:12:417:-29.7324,0,-40.447	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	1/1:84:0,84:0:0:84:2998:-270.047,-25.2865,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:49:25,24:25:888:24:860:-62.9714,0,-65.4886	0/1:67:42,24:42:1499:24:860:-57.4941,0,-114.975	1/1:100:0,100:0:0:100:3530:-317.821,-30.103,0	1/1:107:0,107:0:0:107:3832:-345.076,-32.2102,0
chr02	17973249	.	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chr02	17973273	.	A	T	5878.55	PASS	AB=0.37848;ABP=274.803;AC=27;AF=0.145161;AN=186;AO=810;CIGAR=1X;DP=8134;DPB=8134;DPRA=0.916458;EPP=1761.9;EPPR=15893.8;GTI=4;LEN=1;MEANALT=1;MQM=28.6778;MQMR=26.7639;NS=93;NUMALT=1;ODDS=0.456383;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28817;QR=262340;RO=7322;RPL=810;RPP=1761.9;RPPR=15902.5;RPR=0;RUN=1;SAF=810;SAP=1761.9;SAR=0;SRF=7321;SRP=15893.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:121:121,0:121:4322:0:0:0,-36.4246,-259.11	0/0:76:76,0:76:2728:0:0:0,-22.8783,-162.52	0/0:137:137,0:137:4901:0:0:0,-41.2411,-292.522	0/0:188:188,0:188:6752:0:0:0,-56.5936,-461.815	0/1:76:50,26:50:1796:26:913:-40.6291,0,-92.135	0/1:94:64,30:64:2281:30:1063:-40.5844,0,-107.326	0/1:87:64,23:64:2296:23:828:-34.0373,0,-131.095	0/0:207:207,0:207:7424:0:0:0,-62.3132,-442.02	0/0:170:170,0:170:6093:0:0:0,-51.1751,-361.785	0/0:53:53,0:53:1908:0:0:0,-15.9546,-131.207	0/0:21:21,0:21:756:0:0:0,-6.32163,-51.4991	0/0:43:43,0:43:1531:0:0:0,-12.9443,-92.5391	0/0:41:41,0:41:1472:0:0:0,-12.3422,-87.3521	0/1:15:5,10:5:180:10:351:-19.8147,0,-7.2546	0/1:44:20,24:20:708:24:860:-49.4901,0,-35.6447	0/1:26:15,11:15:531:11:392:-19.4611,0,-26.6114	0/0:9:9,0:9:320:0:0:0,-2.70927,-19.4291	0/1:8:4,4:4:144:4:144:-7.05897,0,-6.37382	0/0:14:14,0:14:504:0:0:0,-4.21442,-30.1438	0/1:185:114,71:114:4077:71:2527:-127.199,0,-224.133	0/1:93:52,41:52:1868:41:1451:-72.3675,0,-91.7902	0/0:127:127,0:127:4534:0:0:0,-38.2308,-327.503	0/0:177:175,2:175:6261:2:72:0,-47.7671,-424.502	0/0:132:128,4:128:4600:4:144:0,-29.612,-284.294	0/0:162:162,0:162:5813:0:0:0,-48.7669,-371.659	0/0:271:270,0:270:9658:0:0:0,-81.2781,-690.784	0/0:238:238,0:238:8532:0:0:0,-71.6451,-546.415	0/0:13:13,0:13:464:0:0:0,-3.91339,-29.7135	0/1:205:120,85:120:4301:85:3025:-169.314,0,-246.265	0/0:158:158,0:158:5663:0:0:0,-47.5627,-361.848	0/1:122:92,30:92:3308:30:1056:-40.1971,0,-189.232	0/0:11:11,0:11:396:0:0:0,-3.31133,-25.4187	0/0:22:22,0:22:792:0:0:0,-6.62266,-51.333	0/0:10:10,0:10:360:0:0:0,-3.0103,-21.5991	0/0:3:3,0:3:104:0:0:0,-0.90309,-6.61118	0/0:12:12,0:12:432:0:0:0,-3.61236,-26.7926	0/0:104:104,0:104:3701:0:0:0,-31.3071,-262.497	0/0:127:127,0:127:4545:0:0:0,-38.2308,-291.203	0/0:24:24,0:24:852:0:0:0,-7.22472,-51.2443	0/1:3:2,1:2:72:1:36:-1.83311,0,-3.78253	0/0:120:120,0:120:4285:0:0:0,-36.1236,-274.772	0/0:14:14,0:14:504:0:0:0,-4.21442,-32.4956	0/1:258:152,106:152:5431:106:3786:-182.123,0,-270.283	0/1:23:16,7:16:576:7:248:-11.3965,0,-32.1855	0/1:27:15,12:15:540:12:432:-22.7205,0,-29.0845	0/0:217:217,0:217:7792:0:0:0,-65.3235,-556.053	0/1:162:111,51:111:3965:51:1827:-68.5753,0,-188.048	0/0:217:217,0:217:7770:0:0:0,-65.3235,-531.992	0/0:116:116,0:116:4168:0:0:0,-34.9195,-284.425	0/0:53:53,0:53:1904:0:0:0,-15.9546,-130.601	0/0:164:164,0:164:5872:0:0:0,-49.3689,-424.548	.:.:.:.:.:.:.:.	0/0:116:116,0:116:4172:0:0:0,-34.9195,-247.829	0/0:96:96,0:96:3452:0:0:0,-28.8989,-249.587	0/1:11:9,2:9:320:2:72:-1.55021,0,-16.1177	0/1:104:61,43:61:2192:43:1540:-74.2531,0,-108.34	0/0:105:105,0:105:3768:0:0:0,-31.6081,-257.848	0/0:11:11,0:11:396:0:0:0,-3.31133,-28.8762	0/1:13:6,7:6:216:7:252:-15.6357,0,-12.0518	0/0:110:110,0:110:3960:0:0:0,-33.1133,-253.067	0/0:50:50,0:50:1788:0:0:0,-15.0515,-123.182	0/0:14:14,0:14:504:0:0:0,-4.21442,-34.5888	0/0:152:151,0:151:5428:0:0:0,-45.4555,-387.162	0/1:196:141,55:141:5056:55:1929:-82.863,0,-286.658	0/0:22:21,1:21:756:1:36:0,-3.88646,-45.8792	0/0:68:68,0:68:2436:0:0:0,-20.47,-167.706	0/1:116:79,37:79:2821:37:1307:-60.4882,0,-157.751	0/0:106:105,1:105:3753:1:36:0,-29.0064,-254.196	0/0:12:12,0:12:428:0:0:0,-3.61236,-27.8392	0/0:65:65,0:65:2332:0:0:0,-19.5669,-138.591	0/1:26:10,16:10:360:16:564:-35.5074,0,-17.4924	0/0:43:43,0:43:1544:0:0:0,-12.9443,-105.771	0/0:217:217,0:217:7763:0:0:0,-65.3235,-463.942	0/1:59:32,27:32:1144:27:959:-44.4773,0,-50.7671	0/0:176:176,0:176:6289:0:0:0,-52.9813,-405.44	0/0:81:81,0:81:2897:0:0:0,-24.3834,-199.144	0/0:158:158,0:158:5663:0:0:0,-47.5627,-336.879	0/0:54:54,0:54:1944:0:0:0,-16.2556,-114.55	0/0:12:12,0:12:428:0:0:0,-3.61236,-25.8377	0/0:47:47,0:47:1677:0:0:0,-14.1484,-107.634	0/1:92:51,41:51:1832:41:1463:-66.7356,0,-80.8635	0/0:290:290,0:290:10381:0:0:0,-87.2987,-710.968	0/0:25:25,0:25:896:0:0:0,-7.52575,-61.604	0/0:39:39,0:39:1400:0:0:0,-11.7402,-97.3771	0/0:31:31,0:31:1093:0:0:0,-9.33193,-75.6606	0/0:59:59,0:59:2120:0:0:0,-17.7608,-145.612	0/1:12:8,4:8:288:4:144:-5.85485,0,-13.7144	0/0:21:21,0:21:756:0:0:0,-6.32163,-45.0971	0/0:37:37,0:37:1328:0:0:0,-11.1381,-79.2423	0/0:18:18,0:18:648:0:0:0,-5.41854,-41.7069	0/1:34:16,18:16:576:18:648:-34.3651,0,-27.6174	0/1:28:8,20:8:288:20:712:-43.903,0,-11.5454	0/0:147:147,0:147:5272:0:0:0,-44.2514,-359.615	0/0:61:61,0:61:2188:0:0:0,-18.3628,-149.292
chr02	17973275	.	A	C	97162.7	PASS	AB=0.616911;ABP=254.34;AC=159;AF=0.854839;AN=186;AO=7246;CIGAR=1X;DP=8071;DPB=8071;DPRA=0;EPP=15728.8;EPPR=1792.3;GTI=5;LEN=1;MEANALT=1.01075;MQM=26.7461;MQMR=28.7221;NS=93;NUMALT=1;ODDS=1.23407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255095;QR=29367;RO=824;RPL=7246;RPP=15737.5;RPPR=1792.3;RPR=0;RUN=1;SAF=7245;SAP=15728.8;SAR=1;SRF=824;SRP=1792.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:117:0,117:0:0:117:4131:-250.433,-35.2205,0	1/1:77:0,77:0:0:77:2743:-164.421,-23.1793,0	1/1:138:0,138:0:0:138:4813:-292.031,-41.5421,0	1/1:184:0,184:0:0:184:6513:-449.415,-55.3895,0	0/1:79:26,53:26:904:53:1866:-97.1144,0,-39.9297	0/1:93:30,63:30:1065:63:2219:-105.349,0,-40.6565	0/1:84:23,61:23:824:61:2156:-123.518,0,-34.8363	1/1:206:0,206:0:0:206:7270:-438.203,-62.0122,0	1/1:168:0,168:0:0:168:5959:-357.045,-50.573,0	1/1:54:0,54:0:0:54:1936:-133.546,-16.2556,0	1/1:20:0,20:0:0:20:699:-48.5528,-6.0206,0	1/1:44:1,43:1:32:43:1453:-87.3867,-10.1908,0	1/1:40:0,40:0:0:40:1398:-84.7784,-12.0412,0	0/1:16:10,6:10:360:6:203:-8.89856,0,-19.6764	0/1:44:25,19:25:896:19:656:-32.7142,0,-51.9823	0/1:26:11,15:11:387:15:523:-26.5102,0,-19.2719	1/1:10:0,10:0:0:10:352:-21.5314,-3.0103,0	0/1:8:4,4:4:144:4:126:-6.09746,0,-7.05897	1/1:14:0,14:0:0:14:500:-30.1101,-4.21442,0	0/1:185:73,112:73:2604:112:3981:-218.872,0,-132.444	0/1:94:40,54:40:1428:54:1903:-95.568,0,-70.1223	1/1:125:0,125:0:0:125:4356:-318.847,-37.6288,0	1/1:176:3,173:3:108:173:6081:-412.545,-44.2936,0	1/1:130:4,126:4:144:126:4418:-277.348,-29.01,0	1/1:159:0,159:0:0:159:5606:-362.961,-47.8638,0	1/1:269:0,269:0:0:269:9504:-682.973,-80.9771,0	1/1:234:0,234:0:0:234:8274:-534.912,-70.441,0	1/1:13:0,13:0:0:13:456:-29.6452,-3.91339,0	0/1:203:88,115:88:3131:115:4053:-232.803,0,-177.313	1/1:157:0,157:0:0:157:5506:-357.099,-47.2617,0	0/1:122:30,92:30:1072:92:3249:-188.024,0,-41.1029	1/1:10:0,10:0:0:10:341:-22.7082,-3.0103,0	1/1:23:0,23:0:0:23:788:-52.7369,-6.92369,0	1/1:10:0,10:0:0:10:360:-21.5991,-3.0103,0	1/1:3:0,3:0:0:3:108:-6.64588,-0.90309,0	1/1:11:0,11:0:0:11:396:-23.7353,-3.31133,0	1/1:105:0,105:0:0:105:3642:-262.852,-31.6082,0	1/1:123:0,123:0:0:123:4343:-281.206,-37.0267,0	1/1:23:0,23:0:0:23:777:-48.252,-6.92369,0	0/1:4:2,2:2:72:2:72:-3.4815,0,-3.99466	1/1:117:0,117:0:0:117:4157:-267.13,-35.2205,0	1/1:15:0,15:0:0:15:532:-34.6972,-4.51545,0	0/1:257:107,150:107:3802:150:5262:-263.592,0,-184.682	0/1:21:6,15:6:212:15:518:-29.9567,0,-9.53812	0/1:27:12,15:12:432:15:527:-28.7479,0,-22.7205	1/1:215:0,215:0:0:215:7537:-544.295,-64.7215,0	0/1:164:53,111:53:1908:111:3906:-186.774,0,-73.2547	1/1:216:0,216:0:0:216:7681:-528.462,-65.0225,0	1/1:118:1,117:1:36:117:4136:-282.4,-32.6188,0	1/1:52:0,52:0:0:52:1834:-126.653,-15.6536,0	1/1:159:0,159:0:0:159:5560:-407.268,-47.8638,0	.:.:.:.:.:.:.:.	1/1:114:0,114:0:0:114:4031:-242.753,-34.3174,0	1/1:96:0,96:0:0:96:3435:-249.068,-28.8989,0	0/1:10:2,8:2:72:8:288:-14.3165,0,-1.85124	0/1:104:43,61:43:1531:61:2162:-107.696,0,-73.9917	1/1:103:0,103:0:0:103:3645:-251.792,-31.0061,0	1/1:10:0,10:0:0:10:345:-25.4866,-3.0103,0	0/1:14:8,6:8:279:6:207:-11.4035,0,-17.6515	1/1:112:0,112:0:0:112:3934:-255.414,-33.7154,0	1/1:47:0,47:0:0:47:1653:-115.01,-14.1484,0	1/1:15:0,15:0:0:15:536:-36.9775,-4.51545,0	1/1:148:0,148:0:0:148:5267:-378.631,-44.5524,0	0/1:195:55,140:55:1960:140:4948:-282.316,0,-84.2143	1/1:23:1,22:1:36:22:779:-47.9397,-4.18749,0	1/1:65:0,64:0:0:64:2270:-156.813,-19.2659,0	0/1:115:37,78:37:1324:78:2740:-154.571,0,-60.9847	1/1:109:1,108:1:36:108:3784:-259.178,-29.9095,0	1/1:12:0,12:0:0:12:432:-27.8899,-3.61236,0	1/1:68:0,68:0:0:68:2386:-144.35,-20.47,0	0/1:27:16,11:16:576:11:376:-19.0787,0,-35.4929	1/1:41:0,41:0:0:41:1431:-99.5305,-12.3422,0	1/1:215:0,215:0:0:215:7558:-458.03,-64.7215,0	0/1:61:29,32:29:1028:32:1106:-49.2872,0,-48.544	1/1:172:1,171:1:36:171:5973:-386.318,-48.3227,0	1/1:79:0,79:0:0:79:2785:-192.375,-23.7814,0	1/1:155:0,155:0:0:155:5461:-329.119,-46.6597,0	1/1:51:0,51:0:0:51:1809:-107.636,-15.3525,0	1/1:12:0,12:0:0:12:423:-25.7358,-3.61236,0	1/1:47:0,47:0:0:47:1680:-108.004,-14.1484,0	0/1:93:41,52:41:1464:52:1825:-82.1487,0,-66.5253	1/1:289:1,288:1:32:288:10109:-696.401,-83.839,0	1/1:25:0,25:0:0:25:876:-61.2587,-7.52575,0	1/1:38:0,38:0:0:38:1320:-93.2827,-11.4391,0	1/1:32:0,32:0:0:32:1104:-77.6484,-9.63296,0	1/1:59:0,59:0:0:59:2066:-144.148,-17.7608,0	0/1:12:4,8:4:140:8:284:-13.6805,0,-5.80323	1/1:20:0,20:0:0:20:696:-42.759,-6.0206,0	1/1:36:0,36:0:0:36:1253:-76.4996,-10.8371,0	1/1:18:0,18:0:0:18:635:-41.4643,-5.41854,0	0/1:33:18,15:18:648:15:519:-25.0641,0,-34.6661	0/1:26:18,8:18:644:8:275:-11.8087,0,-39.3841	1/1:147:0,147:0:0:147:5173:-356.82,-44.2514,0	1/1:61:0,61:0:0:61:2136:-148.088,-18.3628,0
chr02	17973280	.	T	A	6058.71	PASS	AB=0.381176;ABP=263.613;AC=27;AF=0.145161;AN=186;AO=818;CIGAR=1X;DP=8135;DPB=8135;DPRA=0.917862;EPP=1779.27;EPPR=15880.8;GTI=4;LEN=1;MEANALT=1.03226;MQM=28.6687;MQMR=26.7523;NS=93;NUMALT=1;ODDS=1.47286;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29348;QR=261361;RO=7316;RPL=818;RPP=1779.27;RPPR=15889.5;RPR=0;RUN=1;SAF=818;SAP=1779.27;SAR=0;SRF=7315;SRP=15880.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:123:123,0:123:4375:0:0:0,-37.0267,-263.384	0/0:79:79,0:79:2840:0:0:0,-23.7814,-168.962	0/0:137:137,0:137:4912:0:0:0,-41.2411,-292.721	0/0:184:184,0:184:6572:0:0:0,-55.3895,-450.691	0/1:78:53,25:53:1900:25:896:-38.2841,0,-98.4079	0/1:95:65,30:65:2327:30:1080:-40.5758,0,-109.519	0/1:86:63,23:63:2249:23:828:-34.3383,0,-128.323	0/0:208:208,0:208:7438:0:0:0,-62.6142,-443.854	0/0:169:169,0:169:6026:0:0:0,-50.8741,-359.19	0/0:53:53,0:53:1889:0:0:0,-15.9546,-130.649	0/0:21:21,0:21:752:0:0:0,-6.32163,-51.4253	0/0:44:44,0:44:1561:0:0:0,-13.2453,-94.5921	0/0:39:39,0:39:1383:0:0:0,-11.7402,-82.8777	0/1:16:6,10:6:212:10:356:-19.6348,0,-9.05257	0/1:43:19,24:19:684:24:864:-49.7445,0,-33.7044	0/1:26:15,11:15:540:11:392:-19.4611,0,-26.8037	0/0:10:10,0:10:347:0:0:0,-3.0103,-21.4293	0/1:8:4,4:4:144:4:144:-7.05897,0,-6.37382	0/0:14:14,0:14:504:0:0:0,-4.21442,-30.1438	0/1:184:112,72:112:4008:72:2584:-130.683,0,-219.956	0/1:94:53,41:53:1885:41:1472:-72.5487,0,-93.2211	0/0:127:127,0:127:4535:0:0:0,-38.2308,-327.87	0/0:174:172,2:172:6159:2:72:0,-46.864,-417.36	0/0:129:125,4:125:4479:4:144:0,-28.7089,-277.144	0/0:163:163,0:163:5812:0:0:0,-49.0679,-373.63	0/0:273:273,0:273:9764:0:0:0,-82.1812,-695.889	0/0:236:236,0:236:8456:0:0:0,-71.0431,-542.132	0/0:13:13,0:13:464:0:0:0,-3.91339,-29.7465	0/1:205:118,87:118:4212:87:3132:-175.045,0,-240.283	0/0:160:160,0:160:5684:0:0:0,-48.1648,-365.321	0/1:121:91,30:91:3272:30:1052:-40.3942,0,-187.071	0/0:10:10,0:10:360:0:0:0,-3.0103,-23.2842	0/0:22:22,0:22:780:0:0:0,-6.62266,-51.1984	0/0:10:10,0:10:360:0:0:0,-3.0103,-21.5991	0/0:3:3,0:3:108:0:0:0,-0.90309,-6.64588	0/0:12:12,0:12:432:0:0:0,-3.61236,-26.7926	0/0:103:103,0:103:3683:0:0:0,-31.0061,-260.611	0/0:126:126,0:126:4461:0:0:0,-37.9298,-287.928	0/0:24:24,0:24:856:0:0:0,-7.22472,-51.2662	0/1:2:1,1:1:36:1:36:-2.13414,0,-1.95665	0/0:118:118,0:118:4201:0:0:0,-35.5215,-269.471	0/0:15:15,0:15:540:0:0:0,-4.51545,-34.7984	0/1:261:154,107:154:5524:107:3840:-184.068,0,-274.299	0/1:22:15,7:15:540:7:248:-11.6976,0,-30.0237	0/1:27:15,12:15:536:12:432:-22.7205,0,-29.0106	0/0:219:219,0:219:7842:0:0:0,-65.9256,-560.477	0/1:166:114,52:114:4062:52:1872:-70.3498,0,-193.32	0/0:215:215,0:215:7689:0:0:0,-64.7214,-527.574	0/0:117:117,0:117:4200:0:0:0,-35.2205,-286.487	0/0:53:53,0:53:1908:0:0:0,-15.9546,-130.674	0/0:161:161,0:161:5728:0:0:0,-48.4658,-415.676	.:.:.:.:.:.:.:.	0/0:115:115,0:115:4105:0:0:0,-34.6184,-245.154	0/0:95:95,0:95:3384:0:0:0,-28.5978,-245.736	0/1:11:9,2:9:324:2:72:-1.55021,0,-16.1516	0/1:103:61,42:61:2156:42:1504:-72.2517,0,-108.037	0/0:102:102,0:102:3657:0:0:0,-30.7051,-250.014	0/0:11:11,0:11:396:0:0:0,-3.31133,-28.8762	0/1:13:5,8:5:180:8:288:-18.3847,0,-9.43933	0/0:111:111,0:111:3977:0:0:0,-33.4143,-254.8	0/0:50:50,0:50:1792:0:0:0,-15.0515,-123.256	0/0:15:15,0:15:540:0:0:0,-4.51545,-37.0514	0/0:150:150,0:150:5369:0:0:0,-45.1545,-383.868	0/1:193:138,55:138:4949:55:1972:-85.1276,0,-279.984	0/0:23:22,1:22:792:1:36:0,-4.18749,-48.1821	0/0:68:68,0:68:2444:0:0:0,-20.47,-167.806	0/1:115:76,39:76:2705:39:1400:-66.3672,0,-150.93	0/0:108:107,1:107:3819:1:36:0,-29.6085,-259.26	0/0:12:12,0:12:432:0:0:0,-3.61236,-27.8899	0/0:68:68,0:68:2428:0:0:0,-20.47,-144.9	0/1:27:11,16:11:396:16:576:-35.4929,0,-19.8049	0/0:43:43,0:43:1499:0:0:0,-12.9443,-103.836	0/0:214:214,0:214:7613:0:0:0,-64.4204,-457.173	0/1:62:32,30:32:1139:30:1072:-50.6575,0,-49.7627	0/0:174:174,0:174:6200:0:0:0,-52.3792,-400.543	0/0:82:82,0:82:2952:0:0:0,-24.6845,-202.324	0/0:161:161,0:161:5733:0:0:0,-48.4658,-343.44	0/0:55:55,0:55:1959:0:0:0,-16.5566,-116.473	0/0:11:11,0:11:396:0:0:0,-3.31133,-23.7353	0/0:48:48,0:48:1720:0:0:0,-14.4494,-110.357	0/1:92:51,40:51:1824:40:1440:-64.7197,0,-80.8303	0/0:291:291,0:291:10390:0:0:0,-87.5997,-712.563	0/0:25:25,0:25:892:0:0:0,-7.52575,-61.5535	0/0:39:39,0:39:1392:0:0:0,-11.7402,-97.2299	0/0:32:32,0:32:1139:0:0:0,-9.63296,-78.5806	0/0:59:59,0:59:2105:0:0:0,-17.7608,-144.962	0/1:12:8,4:8:288:4:144:-5.85485,0,-13.7144	0/0:21:21,0:21:752:0:0:0,-6.32163,-45.0634	0/0:38:38,0:38:1360:0:0:0,-11.4391,-81.345	0/0:18:18,0:18:640:0:0:0,-5.41854,-41.6058	0/1:35:17,18:17:599:18:648:-34.064,0,-29.2653	0/1:28:8,20:8:288:20:716:-44.0071,0,-11.5454	0/0:145:145,0:145:5177:0:0:0,-43.6493,-353.962	0/0:62:62,0:62:2228:0:0:0,-18.6639,-151.851
chr02	18179470	.	C	T	30419	PASS	AB=0.501786;ABP=3.08785;AC=30;AF=0.159574;AN=188;AO=1414;CIGAR=1X;DP=9252;DPB=9252;DPRA=0.975304;EPP=3073.47;EPPR=16992.6;GTI=0;LEN=1;MEANALT=1;MQM=59.9661;MQMR=59.9688;NS=94;NUMALT=1;ODDS=7.11992;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50562;QR=279434;RO=7832;RPL=1066;RPP=794.698;RPPR=6242.82;RPR=348;RUN=1;SAF=1066;SAP=794.698;SAR=348;SRF=6290;SRP=6253.34;SRR=1542;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:118:118,0:118:4203:0:0:0,-35.5215,-378.45	0/0:159:159,0:159:5627:0:0:0,-47.8638,-506.55	0/0:174:173,1:173:6191:1:36:0,-48.7809,-553.6	0/1:44:22,22:22:784:22:788:-57.9995,0,-57.6386	0/1:79:36,43:36:1279:43:1544:-115.472,0,-91.6311	0/1:118:48,70:48:1724:70:2435:-183.88,0,-119.924	0/0:201:200,1:200:7099:1:36:0,-56.9088,-635.373	0/0:123:123,0:123:4395:0:0:0,-37.0267,-395.723	0/0:93:93,0:93:3315:0:0:0,-27.9958,-298.569	0/0:101:101,0:101:3581:0:0:0,-30.404,-322.498	0/0:79:79,0:79:2818:0:0:0,-23.7814,-253.858	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:102:59,43:59:2097:43:1548:-108.537,0,-158.293	0/1:58:28,30:28:1004:30:1080:-80.0535,0,-73.2138	0/1:42:28,14:28:999:14:493:-32.0584,0,-77.5812	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:80:33,47:33:1162:47:1688:-128.121,0,-80.8029	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/1:253:145,108:145:5174:108:3865:-271.88,0,-389.64	0/1:109:58,51:58:2079:51:1831:-132.258,0,-154.297	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/0:91:91,0:91:3201:0:0:0,-27.3937,-288.313	0/1:119:55,64:55:1972:64:2296:-171.079,0,-141.93	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.71	0/0:262:262,0:262:9379:0:0:0,-78.8699,-844.054	0/0:170:170,0:170:6092:0:0:0,-51.1751,-548.381	0/0:39:38,1:38:1344:1:36:0,-8.14189,-116.881	0/1:227:116,111:116:4138:111:3988:-290.774,0,-304.27	0/0:105:105,0:105:3751:0:0:0,-31.6081,-337.785	0/1:77:33,44:33:1180:44:1580:-119.312,0,-83.3287	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:164:164,0:164:5828:0:0:0,-49.3689,-524.61	0/0:130:129,0:129:4628:0:0:0,-38.8329,-416.471	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:187:187,0:187:6677:0:0:0,-56.2926,-601.007	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:174:93,81:93:3340:81:2912:-209.935,0,-248.437	0/1:81:43,38:43:1516:38:1368:-99.0374,0,-112.347	0/1:49:21,28:21:748:28:1008:-76.2859,0,-52.8948	0/0:95:95,0:95:3382:0:0:0,-28.5978,-304.596	0/1:144:63,81:63:2251:81:2901:-217.975,0,-159.504	0/0:157:156,0:156:5565:0:0:0,-46.9607,-500.614	0/0:111:111,0:111:3952:0:0:0,-33.4143,-355.871	0/0:125:125,0:125:4454:0:0:0,-37.6287,-401.029	0/0:170:169,0:169:6036:0:0:0,-50.8741,-542.983	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/0:388:387,0:387:13798:0:0:0,-116.499,-1241.24	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:144:70,74:70:2490:74:2648:-195.217,0,-181.004	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:89:89,0:89:3179:0:0:0,-26.7917,-286.334	0/0:129:129,0:129:4619:0:0:0,-38.8329,-415.873	0/0:1:1,0:1:21:0:0:0,-0.30103,-2.09995	0/0:111:109,0:109:3877:0:0:0,-32.8123,-348.765	0/1:206:121,85:121:4289:85:3016:-209.657,0,-324.016	0/0:87:83,4:83:2980:4:144:0,-12.876,-255.118	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084	0/1:134:58,76:58:2051:76:2687:-201.733,0,-144.521	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:111:111,0:111:3963:0:0:0,-33.4143,-356.861	0/1:72:38,34:38:1364:34:1204:-86.9917,0,-100.365	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:113:113,0:113:4028:0:0:0,-34.0164,-362.651	0/1:67:25,42:25:900:42:1512:-116.206,0,-61.152	0/0:110:110,0:110:3891:0:0:0,-33.1133,-350.354	0/0:121:121,0:121:4329:0:0:0,-36.4246,-389.784	0/0:84:84,0:84:2994:0:0:0,-25.2865,-269.691	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:133:133,0:133:4744:0:0:0,-40.037,-427.118	0/1:160:83,77:83:2967:77:2770:-201.376,0,-219.098	0/0:275:275,0:275:9806:0:0:0,-82.7832,-882.487	0/0:90:88,2:88:3136:2:72:0,-20.256,-275.628	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:137:137,0:137:4869:0:0:0,-41.2411,-438.365	0/1:37:19,18:19:667:18:642:-46.9687,0,-49.2165	0/0:92:92,0:92:3283:0:0:0,-27.6948,-295.687	0/0:90:90,0:90:3192:0:0:0,-27.0927,-287.503	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/1:120:60,60:60:2125:60:2156:-158.183,0,-155.393	0/1:68:26,42:26:932:42:1494:-114.284,0,-63.7288	0/0:96:96,0:96:3443:0:0:0,-28.8989,-310.082	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.079
chr02	18699551	.	T	C	230443	PASS	AB=0.710373;ABP=859.088;AC=159;AF=0.845745;AN=188;AO=9056;CIGAR=1X;DP=9715;DPB=9715;DPRA=0;EPP=19667.9;EPPR=1418.81;GTI=7;LEN=1;MEANALT=1.06383;MQM=50.6905;MQMR=59.9294;NS=94;NUMALT=1;ODDS=2.41748;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317030;QR=23248;RO=652;RPL=6375;RPP=3275;RPPR=1367.17;RPR=2681;RUN=1;SAF=6375;SAP=3275;SAR=2681;SRF=646;SRP=1367.17;SRR=6;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:66:0,66:0:0:66:2307:-206.047,-19.868,0	1/1:149:0,149:0:0:149:5229:-419.996,-44.8535,0	1/1:271:0,269:0:0:269:9347:-820.303,-80.9771,0	1/1:216:0,216:0:0:216:7643:-665.083,-65.0225,0	0/1:63:23,40:23:824:40:1431:-102.27,0,-55.5184	0/1:33:5,28:5:180:28:976:-75.7019,0,-6.61807	0/1:76:15,61:15:540:61:2134:-164.92,0,-26.0583	1/1:199:0,199:0:0:199:6989:-591.197,-59.905,0	1/1:116:0,116:0:0:116:4058:-349.218,-34.9195,0	1/1:100:0,100:0:0:100:3508:-299.665,-30.103,0	1/1:104:0,104:0:0:104:3619:-307.48,-31.3071,0	1/1:111:0,111:0:0:111:3855:-334.023,-33.4143,0	1/1:98:0,98:0:0:98:3374:-290.119,-29.5009,0	0/1:79:22,57:22:764:57:1998:-143.136,0,-45.2954	0/1:76:29,47:29:1032:47:1639:-119.806,0,-70.3127	0/1:71:27,43:27:972:43:1521:-106.733,0,-66.4064	1/1:99:0,99:0:0:99:3421:-282.498,-29.802,0	0/1:48:10,38:10:360:38:1327:-96.919,0,-18.2949	1/1:62:0,62:0:0:62:2175:-186.23,-18.6639,0	0/1:126:34,92:34:1209:92:3209:-236.759,0,-71.1844	0/1:108:19,89:19:675:89:3054:-231.619,0,-28.5657	1/1:100:0,100:0:0:100:3515:-307.488,-30.103,0	1/1:88:0,88:0:0:88:3075:-270.482,-26.4906,0	0/1:73:14,59:14:504:59:2058:-154.343,0,-23.7229	1/1:95:0,95:0:0:95:3325:-289.883,-28.5979,0	1/1:296:4,292:4:144:292:10267:-877.778,-75.7913,0	1/1:285:0,285:0:0:285:9918:-852.683,-85.7936,0	1/1:48:0,48:0:0:48:1683:-144.823,-14.4494,0	0/1:190:55,135:55:1976:135:4718:-354.03,0,-120.919	1/1:123:0,123:0:0:123:4337:-364.378,-37.0267,0	0/1:62:21,41:21:743:41:1402:-107.686,0,-48.5295	1/1:24:0,24:0:0:24:847:-72.6987,-7.22472,0	1/1:26:0,26:0:0:26:877:-77.7086,-7.82678,0	1/1:19:0,19:0:0:19:672:-57.8873,-5.71957,0	1/1:6:0,6:0:0:6:208:-18.6818,-1.80618,0	1/1:23:0,23:0:0:23:816:-68.6564,-6.92369,0	1/1:208:0,208:0:0:208:7259:-630.162,-62.6142,0	1/1:105:0,105:0:0:105:3729:-305.873,-31.6082,0	1/1:105:0,105:0:0:105:3660:-303.581,-31.6082,0	0/1:5:1,4:1:36:4:135:-10.4744,0,-2.09312	1/1:167:0,167:0:0:167:5896:-510.849,-50.272,0	1/1:63:0,63:0:0:63:2192:-190.222,-18.9649,0	0/1:157:48,109:48:1705:109:3799:-284.221,0,-106.472	0/1:70:24,46:24:852:46:1632:-120.412,0,-55.9283	0/1:46:18,28:18:648:28:975:-71.7145,0,-44.8045	1/1:128:0,128:0:0:128:4545:-400.498,-38.5318,0	0/1:91:23,67:23:820:67:2361:-177.902,0,-46.6459	1/1:183:1,182:1:36:182:6353:-551.033,-51.4902,0	1/1:117:0,117:0:0:117:4091:-354.493,-35.2205,0	1/1:208:0,208:0:0:208:7318:-626.968,-62.6142,0	1/1:90:0,90:0:0:90:3185:-274.945,-27.0927,0	0/1:5:1,4:1:36:4:136:-10.1147,0,-2.09312	1/1:130:0,130:0:0:130:4621:-393.717,-39.1339,0	1/1:63:0,63:0:0:63:2243:-196.501,-18.9649,0	0/1:11:2,9:2:72:9:320:-22.8926,0,-3.52539	0/1:142:48,94:48:1711:94:3285:-244.107,0,-111.528	1/1:63:0,63:0:0:63:2230:-197.077,-18.9649,0	0/1:6:1,5:1:36:5:180:-13.6437,0,-1.79209	1/1:14:1,13:1:36:13:443:-34.5796,-0.616145,0	1/1:78:0,78:0:0:78:2757:-234.171,-23.4803,0	1/1:134:0,134:0:0:134:4601:-398.551,-40.338,0	1/1:7:0,7:0:0:7:252:-21.7793,-2.10721,0	1/1:159:2,157:2:72:157:5528:-475.497,-41.0319,0	0/1:130:29,101:29:1044:101:3569:-265.153,0,-55.1405	1/1:107:2,105:2:72:105:3730:-302.436,-25.3735,0	1/1:103:0,103:0:0:103:3610:-316.915,-31.0061,0	0/1:116:38,77:38:1360:77:2735:-198.455,0,-87.7215	1/1:147:1,146:1:36:146:5002:-433.794,-40.6531,0	1/1:77:0,77:0:0:77:2614:-226.368,-23.1793,0	1/1:83:0,83:0:0:83:2889:-248.112,-24.9855,0	0/1:51:13,38:13:459:38:1347:-99.766,0,-26.2916	1/1:27:0,27:0:0:27:955:-79.5251,-8.12781,0	1/1:125:0,125:0:0:125:4420:-368.618,-37.6288,0	0/1:72:19,53:19:680:53:1811:-137.627,0,-39.855	1/1:138:0,138:0:0:138:4843:-414.729,-41.5421,0	1/1:211:0,210:0:0:210:7359:-640.136,-63.2163,0	1/1:195:0,195:0:0:195:6804:-579.432,-58.7009,0	1/1:165:0,165:0:0:165:5786:-493.502,-49.67,0	1/1:31:0,31:0:0:31:1068:-93.8614,-9.33193,0	1/1:195:0,195:0:0:195:6813:-592.506,-58.7009,0	0/1:115:31,83:31:1107:83:2928:-216.122,0,-65.263	1/1:213:0,213:0:0:213:7512:-648.915,-64.1194,0	1/1:94:0,94:0:0:94:3291:-282.74,-28.2968,0	1/1:82:0,82:0:0:82:2879:-247.485,-24.6845,0	1/1:68:0,68:0:0:68:2372:-199.981,-20.47,0	1/1:155:0,155:0:0:155:5432:-466.053,-46.6597,0	0/1:20:7,13:7:243:13:446:-31.2893,0,-16.1869	1/1:75:0,75:0:0:75:2582:-222.65,-22.5773,0	1/1:101:0,101:0:0:101:3486:-294.703,-30.404,0	1/1:65:0,65:0:0:65:2261:-193.771,-19.567,0	0/1:122:33,89:33:1152:89:3064:-220.298,0,-67.2568	0/1:63:31,32:31:1112:32:1135:-79.7769,0,-81.4265	1/1:148:0,148:0:0:148:5225:-454.261,-44.5524,0	1/1:137:0,137:0:0:137:4804:-420.517,-41.2411,0
chr02	18769451	.	A	C	122774	PASS	AB=0.564252;ABP=70.8174;AC=156;AF=0.83871;AN=186;AO=5590;CIGAR=1X;DP=6437;DPB=6437;DPRA=0;EPP=12141.5;EPPR=1827.05;GTI=1;LEN=1;MEANALT=1.06452;MQM=59.9769;MQMR=60;NS=93;NUMALT=1;ODDS=0.936157;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199701;QR=29911;RO=840;RPL=0;RPP=12141.5;RPPR=1827.05;RPR=5590;RUN=1;SAF=5590;SAP=12141.5;SAR=0;SRF=840;SRP=1827.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,59:0:0:59:2096:-188.91,-17.7608,0	1/1:90:0,90:0:0:90:3212:-289.304,-27.0927,0	1/1:104:0,104:0:0:104:3720:-335.001,-31.3071,0	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	0/1:33:12,21:12:432:21:752:-58.0723,0,-29.2872	0/1:39:10,29:10:360:29:1033:-81.543,0,-21.0041	0/1:50:17,33:17:612:33:1169:-90.4646,0,-40.3619	1/1:120:2,118:2:57:118:4224:-374.927,-30.7103,0	1/1:77:0,77:0:0:77:2744:-247.203,-23.1793,0	1/1:71:0,71:0:0:71:2527:-227.682,-21.3731,0	1/1:101:0,101:0:0:101:3609:-325.015,-30.404,0	1/1:69:0,69:0:0:69:2454:-221.114,-20.7711,0	1/1:68:0,68:0:0:68:2423:-218.326,-20.47,0	0/1:107:58,49:58:2057:49:1734:-124.133,0,-153.189	0/1:61:33,28:33:1172:28:1004:-72.313,0,-87.4247	0/1:74:39,35:39:1396:35:1247:-90.2579,0,-103.663	1/1:68:0,68:0:0:68:2410:-217.156,-20.47,0	0/1:56:30,26:30:1061:26:932:-67.3412,0,-78.9417	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:85:41,44:41:1472:44:1580:-116.904,0,-107.189	0/1:111:57,54:57:2018:54:1932:-140.742,0,-148.475	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	0/1:58:11,47:11:381:47:1684:-134.387,0,-17.1609	1/1:62:0,61:0:0:61:2186:-196.646,-18.3628,0	1/1:159:0,158:0:0:158:5656:-508.8,-47.5627,0	1/1:97:1,96:1:32:96:3436:-306.254,-26.0006,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:95:37,58:37:1324:58:2045:-155.723,0,-90.8642	1/1:79:1,78:1:36:78:2800:-248.641,-20.1831,0	0/1:91:35,56:35:1237:56:2000:-152.879,0,-84.2386	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:125:0,125:0:0:125:4484:-403.728,-37.6288,0	1/1:102:0,102:0:0:102:3632:-327.082,-30.7051,0	1/1:72:0,72:0:0:72:2559:-230.56,-21.6742,0	.:.:.:.:.:.:.:.	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:91:22,69:22:784:69:2464:-194.621,0,-43.4902	0/1:65:27,38:27:964:38:1347:-101.963,0,-67.5099	0/1:58:27,31:27:968:31:1104:-82.2109,0,-69.9776	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:78:42,36:42:1485:36:1280:-92.0229,0,-110.462	1/1:92:1,91:1:36:91:3263:-290.291,-24.0965,0	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0	1/1:88:0,88:0:0:88:3120:-281.028,-26.4906,0	1/1:68:0,68:0:0:68:2428:-218.776,-20.47,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	1/1:86:0,85:0:0:85:3032:-272.751,-25.5876,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:20:9,11:9:309:11:392:-29.5995,0,-22.1201	0/1:88:32,56:32:1133:56:2004:-154.143,0,-75.786	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:77:0,77:0:0:77:2745:-247.292,-23.1793,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	0/1:87:31,56:31:1108:56:1980:-152.283,0,-73.8414	1/1:63:2,61:2:72:61:2184:-189.989,-12.1282,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:91:41,50:41:1476:50:1788:-133.809,0,-105.742	1/1:99:7,92:7:244:92:3304:-275.279,-7.50254,0	1/1:65:1,64:1:36:64:2260:-200.063,-15.9687,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:63:32,31:32:1148:31:1100:-80.3448,0,-84.6649	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:52:1,51:1:36:51:1803:-158.952,-12.0553,0	0/1:69:27,42:27:964:42:1500:-114.524,0,-66.3058	1/1:228:0,226:0:0:226:8062:-725.234,-68.0328,0	1/1:100:0,100:0:0:100:3584:-322.767,-30.103,0	1/1:87:0,87:0:0:87:3108:-279.948,-26.1896,0	1/1:84:0,83:0:0:83:2980:-268.072,-24.9855,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:79:20,59:20:716:59:2112:-166.568,0,-40.9863	1/1:120:0,120:0:0:120:4280:-385.38,-36.1236,0	1/1:52:1,51:1:21:51:1827:-162.119,-13.5536,0	1/1:68:0,68:0:0:68:2423:-218.326,-20.47,0	1/1:64:0,64:0:0:64:2271:-204.652,-19.2659,0	1/1:90:0,90:0:0:90:3207:-288.853,-27.0927,0	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	1/1:94:0,94:0:0:94:3360:-302.617,-28.2968,0	1/1:73:0,73:0:0:73:2608:-234.968,-21.9752,0	1/1:84:0,84:0:0:84:2997:-269.76,-25.2865,0	0/1:124:59,64:59:2108:64:2281:-168.164,0,-152.603	0/1:71:50,21:50:1796:21:752:-46.6331,0,-140.549	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:104:0,104:0:0:104:3711:-334.192,-31.3071,0
chr02	18769487	.	C	T	19085.6	PASS	AB=0.426881;ABP=112.883;AC=31;AF=0.164894;AN=188;AO=1027;CIGAR=1X;DP=8162;DPB=8162;DPRA=0.990069;EPP=2224.44;EPPR=15485.6;GTI=2;LEN=1;MEANALT=1.09756;MQM=59.9202;MQMR=59.9627;NS=94;NUMALT=1;ODDS=1.10168;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35419;QR=252336;RO=7130;RPL=804;RPP=716.744;RPPR=4350;RPR=223;RUN=1;SAF=805;SAP=721.666;SAR=222;SRF=5454;SRP=4350;SRR=1676;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.658	0/0:109:109,0:109:3863:0:0:0,-32.8123,-347.866	0/0:122:122,0:122:4292:0:0:0,-36.7257,-386.457	0/0:139:138,1:138:4870:1:36:0,-38.2449,-434.859	0/1:42:26,16:26:923:16:552:-37.3601,0,-70.7435	0/1:39:29,10:29:1040:10:360:-21.0041,0,-82.1742	0/1:82:53,29:53:1870:29:965:-62.4641,0,-143.893	0/0:137:137,0:137:4867:0:0:0,-41.2411,-438.184	0/0:94:94,0:94:3331:0:0:0,-28.2968,-299.971	0/0:96:95,0:95:3356:0:0:0,-28.5978,-301.895	0/0:115:115,0:115:4057:0:0:0,-34.6184,-365.319	0/0:103:103,0:103:3614:0:0:0,-31.0061,-325.466	0/0:92:92,0:92:3236:0:0:0,-27.6948,-291.461	0/1:119:56,63:56:2000:63:2164:-159.199,0,-144.451	0/1:76:38,38:38:1338:38:1336:-97.6589,0,-97.8402	0/1:94:46,48:46:1624:48:1632:-118.863,0,-118.13	0/0:81:81,0:81:2765:0:0:0,-24.3834,-249.052	0/1:61:29,32:29:1018:32:1118:-82.5632,0,-73.5676	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:108:56,52:56:1975:52:1793:-129.133,0,-145.51	0/1:130:69,61:69:2438:61:2135:-152.425,0,-180.541	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:123:123,0:123:4346:0:0:0,-37.0267,-391.317	0/1:71:53,18:53:1849:18:640:-36.5562,0,-145.302	0/0:80:80,0:80:2843:0:0:0,-24.0824,-256.109	0/0:186:186,0:186:6539:0:0:0,-55.9916,-588.6	0/0:146:145,1:145:5164:1:36:0,-40.3521,-461.303	0/0:71:71,0:71:2464:0:0:0,-21.3731,-222.012	0/1:152:86,65:86:3042:65:2251:-157.076,0,-228.233	0/0:98:98,0:98:3483:0:0:0,-29.5009,-313.68	0/1:112:69,42:69:2451:42:1424:-94.778,0,-187.179	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:4,3:4:135:3:104:-7.5956,0,-10.3753	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:157:157,0:157:5562:0:0:0,-47.2617,-500.707	0/0:110:110,0:110:3921:0:0:0,-33.1133,-353.081	0/0:82:81,1:81:2850:1:36:0,-21.0862,-253.139	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:114:114,0:114:4033:0:0:0,-34.3174,-363.154	0/0:55:55,0:55:1938:0:0:0,-16.5566,-174.695	0/1:122:85,36:85:3012:36:1261:-77.1413,0,-234.673	0/1:89:54,35:54:1876:35:1179:-79.6109,0,-142.322	0/1:73:37,36:37:1294:36:1229:-88.9311,0,-94.7843	0/0:46:45,1:45:1595:1:32:0,-10.6481,-140.64	0/1:89:40,49:40:1420:49:1704:-126.849,0,-101.306	0/0:113:112,1:112:3945:1:32:0,-30.8171,-352.033	0/0:117:117,0:117:4154:0:0:0,-35.2205,-374.026	0/0:121:121,0:121:4271:0:0:0,-36.4246,-384.523	0/0:82:82,0:82:2898:0:0:0,-24.6845,-261.057	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/0:95:95,0:95:3360:0:0:0,-28.5978,-302.617	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/1:134:89,45:89:3160:45:1569:-101.161,0,-244.287	0/0:58:58,0:58:2039:0:0:0,-17.4597,-183.779	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/0:95:94,1:94:3343:1:36:0,-24.9996,-297.467	0/0:91:91,0:91:3243:0:0:0,-27.3937,-292.091	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:102:101,1:101:3585:1:21:0,-28.6051,-320.758	0/1:110:67,43:67:2391:43:1489:-101.186,0,-182.333	0/0:86:82,4:82:2892:4:140:0,-12.944,-247.565	0/0:75:75,0:75:2658:0:0:0,-22.5772,-239.466	0/1:134:76,57:76:2669:57:1871:-128.403,0,-200.205	0/0:116:111,5:111:3972:5:176:0,-18.7345,-341.486	0/0:77:77,0:77:2732:0:0:0,-23.1793,-246.122	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:68:37,31:37:1311:31:1104:-79.2006,0,-97.8208	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.747	0/1:76:44,32:44:1539:32:1093:-75.7925,0,-115.92	0/0:249:248,1:248:8802:1:36:0,-71.3582,-788.572	0/0:122:122,0:122:4359:0:0:0,-36.7257,-392.485	0/0:97:97,0:97:3431:0:0:0,-29.1999,-309.003	0/0:103:103,0:103:3654:0:0:0,-31.0061,-329.066	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9923	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.21	0/1:84:63,21:63:2232:21:727:-40.4615,0,-175.855	0/0:161:161,0:161:5718:0:0:0,-48.4658,-514.739	0/0:66:66,0:66:2321:0:0:0,-19.868,-207.96	0/0:99:99,0:99:3485:0:0:0,-29.802,-313.861	0/0:88:88,0:88:3057:0:0:0,-26.4906,-275.359	0/0:143:143,0:143:5068:0:0:0,-43.0473,-456.251	0/1:25:14,11:14:466:11:396:-28.457,0,-34.7301	0/0:119:119,0:119:4232:0:0:0,-35.8226,-381.06	0/0:104:104,0:104:3651:0:0:0,-31.3071,-328.795	0/0:95:95,0:95:3401:0:0:0,-28.5978,-306.173	0/1:136:74,62:74:2633:62:2158:-153.537,0,-196.238	0/1:91:35,56:35:1252:56:1904:-144.233,0,-85.5913	0/0:83:83,0:83:2941:0:0:0,-24.9855,-264.924	0/0:160:160,0:160:5654:0:0:0,-48.1648,-508.983
chr02	18769495	.	AGTGG	AGTGA	187706	PASS	AB=0.485968;ABP=7.64192;AC=157;AF=0.835106;AN=188;AO=7098;CIGAR=4M1X;DP=8562;DPB=8564.4;DPRA=0;EPP=15407.4;EPPR=3017.01;GTI=0;LEN=1;MEANALT=1.60638;MQM=59.9669;MQMR=59.9496;NS=94;NUMALT=1;ODDS=3.20532;PAIRED=0;PAIREDR=0;PAO=4;PQA=140;PQR=0;PRO=4;QA=251061;QR=45611;RO=1388;RPL=5301;RPP=3759.19;RPPR=132.773;RPR=1797;RUN=1;SAF=5300;SAP=3754.9;SAR=1798;SRF=838;SRP=132.773;SRR=550;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:79:0,78:0:0:78:2768:-249.05,-23.4803,0	1/1:123:0,123:0:0:123:4352:-391.855,-37.0267,0	1/1:130:0,130:0:0:130:4607:-414.795,-39.1339,0	1/1:134:0,132:0:0:132:4680:-421.127,-39.736,0	0/1:42:17,25:17:564:25:884:-67.2351,0,-38.4309	0/1:55:21,34:21:693:34:1208:-92.4671,0,-46.1231	0/1:90:39,51:39:1296:51:1809:-135.997,0,-89.8388	1/1:137:0,136:0:0:136:4811:-432.939,-40.9401,0	1/1:114:0,113:0:0:113:4023:-362.032,-34.0164,0	1/1:95:0,94:0:0:94:3321:-298.829,-28.2968,0	1/1:112:0,112:0:0:112:3967:-357.222,-33.7154,0	1/1:118:0,118:0:0:118:4138:-372.611,-35.5215,0	1/1:95:0,95:0:0:95:3328:-299.741,-28.5979,0	0/1:131:72,57:72:2422:57:2003:-141.368,0,-179.064	0/1:89:51,38:51:1719:38:1338:-93.9268,0,-128.199	0/1:93:52,40:52:1742:40:1412:-99.4108,0,-129.092	1/1:88:1,87:1:24:87:3013:-268.967,-24.0907,0	0/1:79:47,32:47:1507:32:1108:-76.2423,0,-112.127	1/1:66:0,66:0:0:66:2294:-206.719,-19.868,0	0/1:123:63,56:63:2086:56:2000:-144.087,0,-151.823	0/1:148:84,64:84:2836:64:2261:-159.199,0,-210.439	1/1:60:0,60:0:0:60:2133:-192.238,-18.0618,0	1/1:120:0,120:0:0:120:4259:-383.489,-36.1236,0	0/1:76:23,52:23:778:52:1847:-143.662,0,-47.5109	1/1:78:0,78:0:0:78:2760:-248.641,-23.4803,0	1/1:180:0,178:0:0:178:6283:-565.206,-53.5833,0	1/1:144:1,142:1:36:142:5015:-447.944,-39.7639,0	1/1:66:0,64:0:0:64:2205:-198.337,-19.2659,0	0/1:167:87,79:87:2805:79:2819:-203.638,0,-202.385	1/1:94:0,92:0:0:92:3288:-295.78,-27.6948,0	0/1:112:50,61:50:1644:61:2163:-161.222,0,-114.525	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:2:0,2:0:0:2:72:-6.83426,-0.60206,0	0/1:8:5,3:5:167:3:108:-7.66693,0,-12.9505	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:152:0,151:0:0:151:5353:-481.547,-45.4555,0	1/1:105:0,105:0:0:105:3686:-331.943,-31.6082,0	1/1:89:1,88:1:36:88:3098:-275.452,-23.1934,0	0/1:2:1,1:1:34:1:32:-2.59725,0,-2.79685	1/1:110:0,109:0:0:109:3876:-348.672,-32.8123,0	1/1:57:0,57:0:0:57:1981:-178.562,-17.1587,0	0/1:136:53,83:53:1747:83:2955:-225.244,0,-116.565	0/1:108:53,52:53:1665:52:1817:-131.886,0,-118.2	0/1:90:55,34:55:1711:34:1191:-80.4401,0,-127.207	1/1:43:0,43:0:0:43:1489:-134.231,-12.9443,0	0/1:109:67,38:67:2200:38:1348:-89.6686,0,-166.312	1/1:108:1,107:1:36:107:3819:-340.293,-28.913,0	1/1:111:0,110:0:0:110:3894:-350.377,-33.1133,0	1/1:113:0,112:0:0:112:3956:-356.032,-33.7154,0	1/1:77:0,77:0:0:77:2730:-245.943,-23.1793,0	0/1:7:4,3:4:135:3:104:-7.5956,0,-10.3759	1/1:107:0,106:0:0:106:3749:-337.295,-31.9092,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	0/1:22:11,11:11:377:11:396:-29.3601,0,-27.6366	0/1:145:57,88:57:1886:88:3103:-235.847,0,-126.364	1/1:49:0,49:0:0:49:1740:-156.884,-14.7505,0	0/1:5:2,3:2:67:3:108:-8.57002,0,-4.85769	0/1:11:6,5:6:207:5:180:-13.2407,0,-15.6567	1/1:94:1,92:1:36:92:3260:-290.103,-24.6774,0	1/1:89:1,88:1:35:88:3077:-273.663,-23.293,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:102:1,100:1:31:100:3546:-316.267,-27.5945,0	0/1:117:53,64:53:1767:64:2284:-170.602,0,-124.086	1/1:81:4,74:4:129:74:2618:-223.964,-11.8372,0	1/1:74:0,74:0:0:74:2636:-237.488,-22.2762,0	0/1:153:80,72:80:2570:72:2534:-182.193,0,-185.434	1/1:114:7,106:7:231:106:3769:-318.303,-13.1901,0	1/1:76:0,72:0:0:72:2520:-226.715,-21.6742,0	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	0/1:73:36,34:36:1240:34:1208:-87.6773,0,-90.5511	1/1:13:0,13:0:0:13:459:-41.6441,-3.91339,0	1/1:78:0,76:0:0:76:2719:-244.707,-22.8783,0	0/1:116:63,52:63:2013:52:1841:-131.135,0,-146.607	1/1:240:0,238:0:0:238:8468:-761.868,-71.6451,0	1/1:121:0,119:0:0:119:4223:-379.896,-35.8226,0	1/1:103:0,102:0:0:102:3639:-327.355,-30.7051,0	1/1:114:0,114:0:0:114:4084:-367.743,-34.3174,0	1/1:6:0,6:0:0:6:205:-18.7806,-1.80618,0	1/1:97:0,96:0:0:96:3418:-307.681,-28.8989,0	0/1:112:49,63:49:1597:63:2248:-168.868,0,-110.294	1/1:156:0,156:0:0:156:5540:-498.728,-46.9607,0	1/1:65:0,61:0:0:61:2163:-194.669,-18.3628,0	1/1:99:0,97:0:0:97:3434:-308.994,-29.1999,0	1/1:84:0,82:0:0:82:2844:-255.928,-24.6845,0	1/1:134:1,132:1:31:132:4636:-414.342,-37.2242,0	0/1:34:19,15:19:598:15:515:-36.4394,0,-43.8835	1/1:140:0,140:0:0:140:4960:-446.55,-42.1442,0	1/1:123:0,123:0:0:123:4314:-388.441,-37.0267,0	1/1:92:0,91:0:0:91:3264:-293.624,-27.3937,0	0/1:142:70,72:70:2418:72:2552:-187.175,0,-175.126	0/1:113:78,34:78:2463:34:1188:-73.15,0,-187.843	1/1:95:1,94:1:32:94:3337:-297.34,-25.3985,0	1/1:161:0,155:0:0:155:5432:-488.761,-46.6597,0
chr02	18838813	.	C	G	93643.5	PASS	AB=0.516243;ABP=6.25524;AC=158;AF=0.840426;AN=188;AO=4242;CIGAR=1X;DP=4942;DPB=4942;DPRA=0;EPP=9214.4;EPPR=1507.84;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9901;MQMR=60;NS=94;NUMALT=1;ODDS=0.0849452;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151902;QR=24833;RO=693;RPL=4242;RPP=9214.4;RPPR=1507.84;RPR=0;RUN=1;SAF=0;SAP=9214.4;SAR=4242;SRF=0;SRP=1507.84;SRR=693;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:83:0,83:0:0:83:2965:-267.082,-24.9855,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:103:0,103:0:0:103:3692:-332.481,-31.0061,0	0/1:37:15,22:15:540:22:792:-60.4676,0,-37.7984	0/1:42:24,18:24:864:18:648:-46.0086,0,-65.4393	0/1:46:19,27:19:680:27:972:-73.9505,0,-47.6818	1/1:70:1,67:1:36:67:2388:-211.58,-17.2316,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:43:0,43:0:0:43:1521:-137.181,-12.9443,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	0/1:22:14,8:14:500:8:288:-19.6447,0,-38.7135	0/1:51:26,25:26:928:25:896:-65.6078,0,-68.4857	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	1/1:35:1,34:1:36:34:1220:-106.509,-6.93778,0	0/1:24:11,13:11:387:13:456:-34.1485,0,-27.9412	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:86:36,50:36:1284:50:1796:-136.034,0,-89.9748	0/1:56:25,31:25:900:31:1104:-82.813,0,-64.4633	1/1:62:0,62:0:0:62:2219:-199.975,-18.6639,0	1/1:75:0,75:0:0:75:2683:-241.715,-22.5773,0	0/1:70:23,47:23:824:47:1683:-130.684,0,-53.4112	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:215:0,215:0:0:215:7696:-692.674,-64.7215,0	1/1:87:0,87:0:0:87:3114:-280.487,-26.1896,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:112:69,43:69:2476:43:1539:-105.088,0,-189.378	1/1:124:0,123:0:0:123:4413:-396.98,-37.0267,0	0/1:91:44,47:44:1584:47:1688:-124.813,0,-115.458	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:116:0,116:0:0:116:4159:-374.491,-34.9195,0	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:92:0,91:0:0:91:3232:-290.744,-27.3937,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:95:61,34:61:2180:34:1220:-81.509,0,-167.868	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:28:13,15:13:464:15:540:-40.5077,0,-33.6687	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	0/1:64:27,37:27:972:37:1328:-100.556,0,-68.532	1/1:123:1,122:1:36:122:4363:-389.246,-33.4284,0	1/1:82:0,82:0:0:82:2932:-264.115,-24.6845,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	1/1:127:0,126:0:0:126:4492:-404.091,-37.9298,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:102:0,102:0:0:102:3648:-328.522,-30.7051,0	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:65:27,38:27:972:38:1368:-103.854,0,-68.231	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:83:0,83:0:0:83:2980:-268.426,-24.9855,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:110:0,110:0:0:110:3932:-354.073,-33.1133,0	0/1:104:57,47:57:2033:47:1688:-120.9,0,-151.933	1/1:44:3,41:3:108:41:1453:-120.989,-3.17015,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:114:43,71:43:1544:71:2548:-195.253,0,-104.936	1/1:69:1,68:1:36:68:2427:-215.087,-17.1728,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:72:28,44:28:1008:44:1584:-121.177,0,-69.3622	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:69:0,69:0:0:69:2468:-222.362,-20.7711,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:114:0,114:0:0:114:4092:-368.465,-34.3174,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:70:0,70:0:0:70:2496:-224.892,-21.0721,0	0/1:49:29,20:29:1040:20:712:-49.6562,0,-79.1639	1/1:139:0,138:0:0:138:4956:-445.828,-41.5421,0	1/1:117:0,117:0:0:117:4200:-378.18,-35.2205,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:31:1,30:1:36:30:1076:-93.5546,-5.73366,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:34:22,12:22:773:12:428:-28.6238,0,-59.6545	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:34:11,23:11:396:23:824:-64.2483,0,-25.7477	0/1:26:17,9:17:612:9:315:-20.8604,0,-47.5867	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:40:0,39:0:0:39:1400:-125.939,-11.7402,0
chr02	18854421	.	G	A	15072.9	PASS	AB=0.493767;ABP=3.63291;AC=31;AF=0.164894;AN=188;AO=924;CIGAR=1X;DP=6394;DPB=6394;DPRA=1.02796;EPP=2009.45;EPPR=11870.1;GTI=2;LEN=1;MEANALT=1;MQM=59.8874;MQMR=59.9984;NS=94;NUMALT=1;ODDS=2.9028;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32966;QR=195252;RO=5465;RPL=0;RPP=2009.45;RPPR=11870.1;RPR=924;RUN=1;SAF=924;SAP=2009.45;SAR=0;SRF=5465;SRP=11870.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:117:117,0:117:4180:0:0:0,-35.2205,-376.383	0/0:122:122,0:122:4330:0:0:0,-36.7257,-389.876	0/0:126:126,0:126:4502:0:0:0,-37.9298,-405.345	0/1:30:23,7:23:809:7:252:-13.9981,0,-64.0974	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	0/1:100:59,41:59:2112:41:1472:-102.673,0,-160.246	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:45:22,23:22:792:23:823:-60.8462,0,-58.0593	0/1:44:25,19:25:888:19:684:-48.645,0,-66.9937	0/1:43:22,21:22:788:21:756:-55.4229,0,-58.3005	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:30:15,15:15:532:15:540:-39.9056,0,-39.1822	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:84:50,34:50:1792:34:1220:-84.8203,0,-136.276	0/1:113:51,62:51:1824:62:2176:-162.086,0,-130.425	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/1:54:40,14:40:1402:14:500:-29.0806,0,-110.217	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:211:211,0:211:7545:0:0:0,-63.5173,-679.089	0/0:151:150,1:150:5342:1:36:0,-41.8573,-477.314	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:185:106,79:106:3773:79:2840:-200.147,0,-284.079	0/0:122:121,0:121:4348:0:0:0,-36.4246,-391.133	0/1:94:36,58:36:1284:58:2067:-158.002,0,-87.5666	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0178	0/0:113:112,0:112:4012:0:0:0,-33.7154,-361.008	0/0:164:164,0:164:5850:0:0:0,-49.3689,-526.611	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:124:124,0:124:4429:0:0:0,-37.3277,-398.781	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:66:35,31:35:1256:31:1112:-80.5234,0,-93.4773	0/1:48:16,32:16:572:32:1123:-86.9123,0,-37.364	0/1:45:23,22:23:824:22:788:-57.6984,0,-60.937	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:50:34,16:34:1224:16:576:-37.1235,0,-95.4155	0/0:143:143,0:143:5109:0:0:0,-43.0473,-459.952	0/0:131:131,0:131:4681:0:0:0,-39.4349,-421.45	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/0:138:137,0:137:4908:0:0:0,-41.2411,-441.511	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/0:119:119,0:119:4257:0:0:0,-35.8226,-383.307	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:22:7,15:7:237:15:540:-42.2962,0,-15.0364	0/1:84:52,32:52:1845:32:1152:-78.7036,0,-141.042	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:19:13,6:13:468:6:208:-13.3395,0,-36.7401	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:204:204,0:204:7300:0:0:0,-61.4101,-657.047	0/1:143:80,63:80:2830:63:2268:-161.33,0,-211.89	0/0:47:46,1:46:1648:1:36:0,-10.5501,-145.01	0/0:69:69,0:69:2449:0:0:0,-20.7711,-220.664	0/1:150:49,101:49:1756:101:3567:-276.064,0,-113.169	0/0:107:105,2:105:3764:2:72:0,-25.3735,-332.122	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:71:32,39:32:1148:39:1404:-105.286,0,-82.2567	0/0:28:28,0:28:981:0:0:0,-8.42884,-88.601	0/0:82:80,0:80:2860:0:0:0,-24.0824,-257.307	0/1:55:21,34:21:756:34:1224:-93.9065,0,-51.8106	0/0:66:66,0:66:2304:0:0:0,-19.868,-207.615	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.451	0/0:57:56,1:56:2000:1:36:0,-13.5604,-176.675	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.27	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:99:97,2:97:3468:2:72:0,-22.9652,-305.496	0/1:67:39,28:39:1400:28:980:-68.3412,0,-106.13	0/0:178:175,3:175:6258:3:108:0,-43.5082,-553.236	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:73:72,1:72:2565:1:36:0,-18.3769,-227.5	0/1:31:17,14:17:608:14:500:-35.9166,0,-45.7201	0/0:42:42,0:42:1478:0:0:0,-12.6433,-133.31	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:65:24,41:24:864:41:1468:-112.849,0,-58.5156	0/1:59:12,47:12:428:47:1650:-131.023,0,-21.098	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:57:57,0:57:2018:0:0:0,-17.1587,-181.889
chr02	18854426	.	C	T	14716.4	PASS	AB=0.488258;ABP=5.20312;AC=31;AF=0.164894;AN=188;AO=905;CIGAR=1X;DP=6423;DPB=6423;DPRA=0.960264;EPP=1968.19;EPPR=11983;GTI=2;LEN=1;MEANALT=1.02857;MQM=59.8961;MQMR=59.9966;NS=94;NUMALT=1;ODDS=3.50396;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32290;QR=197497;RO=5517;RPL=0;RPP=1968.19;RPPR=11983;RPR=905;RUN=1;SAF=905;SAP=1968.19;SAR=0;SRF=5517;SRP=11983;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:117:117,0:117:4185:0:0:0,-35.2205,-376.83	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.725	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.604	0/1:30:23,7:23:816:7:252:-13.9981,0,-64.7308	0/1:25:13,12:13:460:12:428:-31.3331,0,-34.2096	0/1:99:59,40:59:2116:40:1432:-99.3756,0,-160.907	0/0:90:90,0:90:3208:0:0:0,-27.0927,-288.944	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/1:45:22,23:22:792:23:824:-60.9354,0,-58.0593	0/1:44:25,19:25:892:19:684:-48.645,0,-67.3544	0/1:43:22,21:22:784:21:756:-55.4229,0,-57.9396	0/0:44:44,0:44:1552:0:0:0,-13.2453,-139.969	0/1:31:16,14:16:576:14:500:-36.0855,0,-42.9253	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:83:49,34:49:1756:34:1220:-85.1213,0,-133.339	0/1:113:52,61:52:1857:61:2167:-161.279,0,-133.391	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:54:40,14:40:1424:14:500:-29.0806,0,-112.202	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:212:212,0:212:7580:0:0:0,-63.8184,-682.239	0/0:153:153,0:153:5488:0:0:0,-46.0576,-494.046	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:182:104,78:104:3728:78:2773:-195.023,0,-280.933	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.611	0/1:91:36,55:36:1292:55:1972:-150.355,0,-89.19	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:117:117,0:117:4195:0:0:0,-35.2205,-377.73	0/0:165:165,0:165:5889:0:0:0,-49.6699,-530.12	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:122:122,0:122:4358:0:0:0,-36.7257,-392.392	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:66:36,30:36:1283:30:1080:-77.6453,0,-95.9046	0/1:46:16,30:16:576:30:1048:-80.7716,0,-38.3276	0/1:45:23,22:23:824:22:788:-57.6984,0,-60.937	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/1:50:34,16:34:1212:16:576:-37.1235,0,-94.3348	0/0:146:146,0:146:5225:0:0:0,-43.9504,-470.386	0/0:134:134,0:134:4785:0:0:0,-40.338,-430.806	0/0:70:70,0:70:2505:0:0:0,-21.0721,-225.701	0/0:139:139,0:139:4977:0:0:0,-41.8432,-448.076	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/0:119:119,0:119:4261:0:0:0,-35.8226,-383.667	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.155	0/1:21:7,14:7:252:14:504:-39.3588,0,-16.7073	0/1:84:52,32:52:1864:32:1152:-78.7036,0,-142.753	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:18:12,6:12:424:6:212:-14.0063,0,-33.0779	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:205:205,0:205:7343:0:0:0,-61.7111,-660.912	0/1:142:79,63:79:2832:63:2264:-161.271,0,-212.372	0/0:48:47,1:47:1684:1:36:0,-10.8512,-148.249	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:147:50,97:50:1800:97:3427:-264.373,0,-118.031	0/0:111:109,2:109:3896:2:72:0,-26.5776,-343.998	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:71:31,40:31:1116:40:1436:-108.165,0,-79.3786	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/1:55:21,34:21:756:34:1216:-93.186,0,-51.8106	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:149:149,0:149:5325:0:0:0,-44.8535,-479.383	0/0:59:58,1:58:2084:1:36:0,-14.1625,-184.232	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.823	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:100:98,2:98:3520:2:72:0,-23.2663,-310.172	0/1:68:42,26:42:1512:26:932:-63.7288,0,-115.905	0/0:180:177,3:177:6348:3:108:0,-44.1102,-561.334	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.359	0/1:31:17,14:17:612:14:466:-32.8859,0,-46.0815	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:52:52,0:52:1850:0:0:0,-15.6536,-166.779	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:65:24,41:24:864:41:1472:-113.209,0,-58.5156	0/1:59:13,46:13:468:46:1633:-129.496,0,-24.6989	0/0:94:94,0:94:3334:0:0:0,-28.2968,-300.276	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539
chr02	18855782	.	C	T	153777	PASS	AB=0.44053;ABP=91.0818;AC=160;AF=0.851064;AN=188;AO=7161;CIGAR=1X;DP=8788;DPB=8788;DPRA=0;EPP=15544.2;EPPR=3518.63;GTI=4;LEN=1;MEANALT=1.04255;MQM=59.9224;MQMR=59.9772;NS=94;NUMALT=1;ODDS=1.00058;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253279;QR=57764;RO=1623;RPL=0;RPP=15552.9;RPPR=3527.31;RPR=7161;RUN=1;SAF=7160;SAP=15544.2;SAR=1;SRF=1622;SRP=3518.63;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:916:-82.7565,-7.82678,0	1/1:128:0,128:0:0:128:4536:-408.407,-38.5318,0	1/1:38:0,38:0:0:38:1322:-119.275,-11.4391,0	1/1:149:0,149:0:0:149:5300:-476.643,-44.8535,0	0/1:91:54,37:54:1909:37:1292:-89.1866,0,-144.692	0/1:54:34,20:34:1207:20:704:-47.4274,0,-92.6797	0/1:112:72,40:72:2572:40:1408:-93.2147,0,-198.015	1/1:189:0,189:0:0:189:6665:-599.589,-56.8947,0	1/1:69:0,69:0:0:69:2438:-219.675,-20.7711,0	1/1:91:0,90:0:0:90:3187:-286.844,-27.0927,0	1/1:47:0,47:0:0:47:1668:-150.407,-14.1484,0	1/1:95:0,95:0:0:95:3326:-299.56,-28.5979,0	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	0/1:72:41,31:41:1464:31:1100:-77.6315,0,-110.382	0/1:88:47,41:47:1684:41:1446:-103.945,0,-125.356	0/1:60:27,33:27:963:33:1179:-88.3554,0,-68.9241	1/1:90:0,90:0:0:90:3215:-289.572,-27.0927,0	0/1:72:40,32:40:1427:32:1148:-81.9557,0,-107.053	1/1:31:0,31:0:0:31:1095:-98.8591,-9.33193,0	0/1:197:115,82:115:4050:82:2872:-199.4,0,-305.385	0/1:158:92,66:92:3284:66:2327:-161.996,0,-248.218	1/1:79:0,79:0:0:79:2812:-253.32,-23.7814,0	1/1:108:0,108:0:0:108:3835:-345.349,-32.5112,0	0/1:150:87,63:87:3104:63:2216:-154.551,0,-234.434	1/1:50:1,49:1:36:49:1752:-154.366,-11.4532,0	1/1:263:1,262:1:36:262:9298:-833.195,-75.5726,0	1/1:163:0,163:0:0:163:5760:-518.514,-49.0679,0	1/1:37:0,37:0:0:37:1302:-117.48,-11.1381,0	0/1:197:116,81:116:4152:81:2845:-196.985,0,-314.56	1/1:291:1,289:1:36:289:10251:-918.927,-84.0603,0	0/1:173:100,73:100:3572:73:2552:-177.853,0,-269.61	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:239:1,238:1:36:238:8422:-754.395,-68.3479,0	1/1:181:0,181:0:0:181:6392:-575.374,-54.4864,0	1/1:51:0,51:0:0:51:1804:-162.642,-15.3525,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:125:0,125:0:0:125:4369:-393.382,-37.6288,0	1/1:23:0,23:0:0:23:813:-73.49,-6.92369,0	0/1:80:45,35:45:1599:35:1252:-88.9027,0,-120.117	0/1:96:42,54:42:1500:54:1927:-144.807,0,-106.396	0/1:84:40,44:40:1406:44:1552:-114.681,0,-101.549	1/1:72:0,72:0:0:72:2537:-228.091,-21.6742,0	0/1:174:107,67:107:3819:67:2362:-160.459,0,-291.339	1/1:154:0,154:0:0:154:5476:-492.971,-46.3586,0	1/1:116:0,116:0:0:116:4123:-371.257,-34.9195,0	1/1:132:0,132:0:0:132:4646:-418.3,-39.736,0	1/1:138:0,138:0:0:138:4872:-438.641,-41.5421,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:69:0,69:0:0:69:2440:-219.23,-20.7711,0	1/1:52:0,52:0:0:52:1842:-166.06,-15.6536,0	0/1:25:13,12:13:468:12:411:-29.7921,0,-34.9339	0/1:120:68,52:68:2406:52:1836:-129.397,0,-180.666	1/1:61:0,61:0:0:61:2152:-193.948,-18.3628,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:6:1,5:1:36:5:172:-14.0118,0,-1.79209	1/1:58:0,58:0:0:58:2049:-184.682,-17.4597,0	1/1:121:0,121:0:0:121:4291:-386.371,-36.4246,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:144:0,144:0:0:144:5073:-456.722,-43.3483,0	0/1:204:109,95:109:3892:95:3361:-241.291,0,-289.054	1/1:79:7,72:7:252:72:2568:-208.341,-0.752411,0	1/1:47:1,46:1:36:46:1594:-140.147,-10.5501,0	0/1:167:101,66:101:3585:66:2327:-159.419,0,-272.586	1/1:136:3,133:3:108:133:4730:-415.786,-30.8649,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:59:0,59:0:0:59:2071:-186.66,-17.7608,0	0/1:90:43,47:43:1523:47:1684:-124.753,0,-110.27	1/1:15:0,15:0:0:15:520:-47.1261,-4.51545,0	1/1:111:1,110:1:36:110:3865:-344.448,-29.8161,0	0/1:71:36,35:36:1257:35:1227:-89.3599,0,-92.0571	1/1:168:0,168:0:0:168:5893:-530.469,-50.573,0	1/1:44:0,44:0:0:44:1552:-139.972,-13.2453,0	1/1:175:0,175:0:0:175:6213:-559.183,-52.6803,0	1/1:101:2,99:2:72:99:3485:-307.028,-23.5673,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:77:0,77:0:0:77:2710:-244.136,-23.1793,0	0/1:131:66,64:66:2333:64:2282:-166.295,0,-170.883	1/1:137:0,137:0:0:137:4840:-435.758,-41.2411,0	1/1:137:1,136:1:36:136:4824:-430.716,-37.6428,0	1/1:81:0,81:0:0:81:2859:-257.545,-24.3834,0	1/1:142:0,142:0:0:142:5043:-453.932,-42.7463,0	1/1:186:1,185:1:36:185:6570:-587.785,-52.3933,0	0/1:48:18,30:18:636:30:1072:-82.3267,0,-43.1186	1/1:64:0,64:0:0:64:2267:-204.293,-19.2659,0	1/1:75:0,74:0:0:74:2611:-234.1,-22.2762,0	1/1:34:0,34:0:0:34:1199:-108.215,-10.235,0	0/1:62:27,35:27:968:35:1236:-92.8758,0,-68.7735	0/1:79:57,22:57:2048:22:784:-47.1025,0,-160.81	1/1:108:0,108:0:0:108:3821:-344.085,-32.5112,0	1/1:113:0,113:0:0:113:4031:-362.979,-34.0164,0
chr02	18855878	.	A	G	22049.2	PASS	AB=0.53785;ABP=32.7634;AC=28;AF=0.148936;AN=188;AO=1305;CIGAR=1X;DP=7813;DPB=7813;DPRA=1.3028;EPP=2828.1;EPPR=14048.2;GTI=1;LEN=1;MEANALT=1;MQM=56.0429;MQMR=59.8533;NS=94;NUMALT=1;ODDS=0.817058;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46596;QR=232750;RO=6508;RPL=1304;RPP=2828.1;RPPR=14048.2;RPR=1;RUN=1;SAF=0;SAP=2836.78;SAR=1305;SRF=0;SRP=14135;SRR=6508;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:71:71,0:71:2506:0:0:0,-21.3731,-225.764	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:101:101,0:101:3604:0:0:0,-30.404,-324.297	0/0:174:174,0:174:6234:0:0:0,-52.3792,-561.138	0/1:53:31,22:31:1099:22:792:-55.6134,0,-83.2176	0/1:40:12,28:12:428:28:1004:-78.5858,0,-26.8176	0/1:124:42,82:42:1508:82:2930:-226.303,0,-98.6869	0/0:117:117,0:117:4183:0:0:0,-35.2205,-376.651	0/0:143:143,0:143:5129:0:0:0,-43.0473,-461.749	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.964	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.799	0/0:87:85,2:85:3039:2:72:0,-19.3529,-266.895	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:44:23,21:23:815:21:756:-54.9954,0,-60.4254	0/1:74:42,32:42:1512:32:1152:-81.4775,0,-114.098	0/1:61:30,31:30:1076:31:1112:-81.2632,0,-78.79	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:22:7,15:7:252:15:540:-42.3002,0,-16.4063	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0719	0/1:164:77,87:77:2753:87:3096:-229.131,0,-198.613	0/1:161:70,91:70:2508:91:3252:-243.783,0,-177.496	0/0:87:87,0:87:3115:0:0:0,-26.1896,-280.565	0/0:108:108,0:108:3884:0:0:0,-32.5112,-349.748	0/1:74:40,34:40:1432:34:1207:-86.5986,0,-106.901	0/0:94:94,0:94:3356:0:0:0,-28.2968,-302.095	0/0:237:236,1:236:8457:1:36:0,-67.7468,-757.368	0/0:192:192,0:192:6875:0:0:0,-57.7978,-618.818	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:160:64,96:64:2263:96:3413:-258.916,0,-155.756	0/0:109:108,1:108:3841:1:36:0,-29.214,-342.289	0/1:76:33,43:33:1184:43:1544:-116.168,0,-83.99	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:171:171,0:171:6144:0:0:0,-51.4761,-552.997	0/0:130:130,0:130:4656:0:0:0,-39.1339,-419.149	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.756	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.05	0/0:33:33,0:33:1179:0:0:0,-9.93399,-106.417	0/1:140:82,58:82:2919:58:2072:-143.644,0,-220.172	0/1:65:34,31:34:1212:31:1096:-78.3754,0,-89.817	0/1:56:24,32:24:860:32:1125:-83.9192,0,-60.0047	0/0:135:135,0:135:4787:0:0:0,-40.639,-430.929	0/1:141:63,78:63:2251:78:2778:-207.291,0,-160.399	0/0:133:127,6:127:4527:6:216:0,-20.346,-387.858	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:89:89,0:89:3183:0:0:0,-26.7917,-286.692	0/0:158:158,0:158:5656:0:0:0,-47.5627,-509.129	0/1:8:6,2:6:216:2:72:-4.42355,0,-17.3823	0/0:128:127,1:127:4555:1:36:0,-34.9336,-406.512	0/0:81:81,0:81:2883:0:0:0,-24.3834,-259.696	0/1:16:9,7:9:324:7:252:-18.1891,0,-24.6894	0/1:124:61,63:61:2171:63:2234:-163.423,0,-158.328	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.058	0/1:13:8,5:8:288:5:180:-12.5887,0,-22.354	0/0:33:32,1:32:1148:1:36:0,-6.33672,-100.033	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.594	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.759	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.464	0/1:158:69,89:69:2464:89:3187:-239.226,0,-174.452	0/0:65:64,1:64:2284:1:36:0,-15.9704,-202.225	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:140:60,80:60:2124:80:2853:-214.306,0,-149.274	0/0:131:129,2:129:4604:2:72:0,-32.7798,-407.801	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.756	0/1:59:20,39:20:720:39:1404:-108.765,0,-47.368	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:141:141,0:141:5052:0:0:0,-42.4452,-454.198	0/1:105:43,62:43:1540:62:2215:-167.813,0,-107.285	0/0:124:123,1:123:4377:1:36:0,-33.7312,-390.372	0/0:117:117,0:117:4212:0:0:0,-35.2205,-379.257	0/0:85:85,0:85:3022:0:0:0,-25.5875,-272.198	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.488	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8024	0/0:75:74,1:74:2660:1:36:0,-18.979,-236.047	0/1:125:68,57:68:2411:57:2031:-145.192,0,-179.609	0/0:207:206,1:206:7358:1:36:0,-58.7647,-658.692	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.666	0/0:86:86,0:86:3079:0:0:0,-25.8886,-277.309	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:117:116,1:116:4148:1:36:0,-31.6248,-369.904	0/1:37:24,13:24:856:13:460:-30.5191,0,-66.223	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.139	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:84:42,42:42:1508:42:1503:-110.146,0,-110.719	0/1:67:21,46:21:752:46:1652:-128.565,0,-47.6068	0/0:105:105,0:105:3747:0:0:0,-31.6081,-337.386	0/0:91:91,0:91:3255:0:0:0,-27.3937,-293.156
chr02	18967725	.	A	G	31910	PASS	AB=0.553347;ABP=87.5746;AC=31;AF=0.164894;AN=188;AO=1912;CIGAR=1X;DP=10805;DPB=10805;DPRA=1.39318;EPP=3715.48;EPPR=18907.8;GTI=0;LEN=1;MEANALT=1;MQM=40.2071;MQMR=59.4958;NS=94;NUMALT=1;ODDS=6.4046;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67957;QR=317418;RO=8893;RPL=52;RPP=3715.48;RPPR=18907.8;RPR=1860;RUN=1;SAF=0;SAP=4154.87;SAR=1912;SRF=0;SRP=19313.9;SRR=8893;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:112:112,0:112:3985:0:0:0,-33.7154,-358.148	0/0:179:179,0:179:6387:0:0:0,-53.8844,-574.879	0/0:181:181,0:181:6486:0:0:0,-54.4864,-583.603	0/0:247:247,0:247:8817:0:0:0,-74.3544,-793.429	0/1:106:35,71:35:1256:71:2540:-185.276,0,-81.4137	0/1:52:12,40:12:432:40:1418:-106.278,0,-23.5676	0/1:120:57,63:57:2035:63:2264:-158.672,0,-147.276	0/0:222:222,0:222:7933:0:0:0,-66.8287,-713.644	0/0:129:129,0:129:4596:0:0:0,-38.8329,-413.108	0/0:141:141,0:141:5023:0:0:0,-42.4452,-451.839	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.971	0/0:45:45,0:45:1597:0:0:0,-13.5463,-143.912	0/0:50:50,0:50:1767:0:0:0,-15.0515,-159.259	0/1:57:34,23:34:1201:23:803:-52.2793,0,-91.2345	0/1:65:35,30:35:1260:30:1072:-74.3014,0,-94.1385	0/1:37:17,20:17:612:20:712:-50.3845,0,-44.2753	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.207	0/1:33:23,10:23:828:10:356:-20.9454,0,-64.9055	0/0:30:30,0:30:1062:0:0:0,-9.0309,-95.7504	0/1:214:105,109:105:3759:109:3902:-272.56,0,-274.086	0/1:194:71,123:71:2544:123:4350:-311.532,0,-170.786	0/0:191:191,0:191:6808:0:0:0,-57.4967,-612.698	0/0:110:110,0:110:3929:0:0:0,-33.1133,-353.603	0/1:201:124,77:124:4416:77:2713:-171.657,0,-337	0/0:96:96,0:96:3426:0:0:0,-28.8989,-308.503	0/0:395:394,1:394:14082:1:36:0,-115.371,-1263.38	0/0:336:336,0:336:11979:0:0:0,-101.146,-1077.58	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1486	0/1:317:134,183:134:4761:183:6536:-481.604,0,-333.197	0/0:102:102,0:102:3643:0:0:0,-30.7051,-328.02	0/1:242:119,123:119:4239:123:4381:-307.833,0,-308.781	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/0:15:15,0:15:536:0:0:0,-4.51545,-47.6416	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:5:1,4:1:36:4:144:-11.1622,0,-2.09312	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2181	0/0:178:178,0:178:6363:0:0:0,-53.5833,-571.977	0/0:210:209,1:209:7465:1:36:0,-59.7136,-668.061	0/0:59:59,0:59:2074:0:0:0,-17.7608,-186.909	0/1:7:4,3:4:144:3:99:-6.80331,0,-11.2017	0/0:191:190,1:190:6804:1:33:0,-54.5505,-609.032	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	0/1:175:53,122:53:1900:122:4342:-318.262,0,-117.336	0/1:94:36,58:36:1277:58:2041:-149.178,0,-86.9273	0/1:56:28,28:28:990:28:989:-69.2855,0,-72.5546	0/0:102:102,0:102:3635:0:0:0,-30.7051,-327.311	0/1:171:87,84:87:3105:84:2995:-204.859,0,-228.109	0/0:241:239,2:239:8530:2:72:0,-65.8344,-760.949	0/0:148:148,0:148:5295:0:0:0,-44.5524,-476.682	0/0:174:174,0:174:6227:0:0:0,-52.3792,-559.974	0/0:311:310,1:310:11062:1:36:0,-90.1658,-991.84	0/1:11:7,4:7:252:4:144:-9.56724,0,-19.7176	0/0:114:113,1:113:4043:1:36:0,-30.7387,-360.368	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.746	0/1:30:15,15:15:540:15:536:-36.9838,0,-39.9056	0/1:152:50,102:50:1788:102:3599:-262.725,0,-115.424	0/0:80:80,0:80:2853:0:0:0,-24.0824,-256.208	0/1:19:8,11:8:288:11:396:-29.469,0,-20.5478	0/1:28:14,14:14:500:14:500:-36.1006,0,-36.9073	0/0:77:77,0:77:2734:0:0:0,-23.1793,-245.589	0/0:75:75,0:75:2655:0:0:0,-22.5772,-239.161	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3645	0/0:304:303,1:303:10829:1:36:0,-87.977,-970.336	0/1:193:108,85:108:3854:85:3009:-203.127,0,-288.776	0/0:107:103,4:103:3683:4:129:0,-20.7735,-319.835	0/0:97:96,1:96:3409:1:36:0,-25.6134,-303.369	0/1:370:124,246:124:4420:246:8746:-645.23,0,-286.534	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.169	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8213	0/0:110:110,0:110:3935:0:0:0,-33.1133,-354.298	0/1:56:28,28:28:1004:28:1008:-71.4893,0,-73.812	0/0:31:31,0:31:1088:0:0:0,-9.33193,-98.2048	0/0:98:96,2:96:3435:2:68:0,-23.0693,-302.871	0/1:90:52,38:52:1860:38:1343:-88.027,0,-140.494	0/0:265:265,0:265:9486:0:0:0,-79.7729,-853.494	0/0:154:154,0:154:5493:0:0:0,-46.3586,-494.383	0/0:143:143,0:143:5123:0:0:0,-43.0473,-461.002	0/0:121:119,2:119:4216:2:72:0,-29.9198,-372.959	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8395	0/0:119:119,0:119:4263:0:0:0,-35.8226,-383.785	0/1:136:68,68:68:2427:68:2414:-162.634,0,-177.726	0/0:231:230,1:230:8248:1:36:0,-65.9514,-736.795	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.203	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.614	0/0:92:92,0:92:3271:0:0:0,-27.6948,-294.576	0/0:110:109,1:109:3868:1:36:0,-29.6326,-344.786	0/1:45:27,18:27:963:18:640:-41.2212,0,-73.438	0/0:71:71,0:71:2523:0:0:0,-21.3731,-227.167	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.574	0/1:65:30,35:30:1072:35:1252:-86.3612,0,-77.2162	0/1:80:22,58:22:783:58:2051:-153.237,0,-46.6892	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.358	0/0:90:90,0:90:3212:0:0:0,-27.0927,-289.273
chr02	18986452	.	A	G	18371.8	PASS	AB=0.461361;ABP=36.7395;AC=31;AF=0.164894;AN=188;AO=1222;CIGAR=1X;DP=9172;DPB=9172;DPRA=1.21658;EPP=2656.55;EPPR=17255.4;GTI=1;LEN=1;MEANALT=1.06667;MQM=59.9198;MQMR=59.9742;NS=94;NUMALT=1;ODDS=6.09351;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42458;QR=279495;RO=7945;RPL=0;RPP=2656.55;RPPR=17255.4;RPR=1222;RUN=1;SAF=0;SAP=2656.55;SAR=1222;SRF=0;SRP=17255.4;SRR=7945;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1195:0:0:0,-10.536,-107.849	0/0:101:101,0:101:3542:0:0:0,-30.404,-318.991	0/0:98:98,0:98:3450:0:0:0,-29.5009,-310.714	0/0:229:229,0:229:8099:0:0:0,-68.9359,-728.849	0/1:52:31,21:31:1103:21:721:-49.5532,0,-83.9262	0/1:29:8,21:8:288:21:717:-56.1075,0,-17.5375	0/1:198:105,93:105:3681:93:3246:-232.103,0,-271.892	0/0:186:186,0:186:6580:0:0:0,-55.9916,-592.278	0/0:58:58,0:58:2033:0:0:0,-17.4597,-183.241	0/0:53:53,0:53:1868:0:0:0,-15.9546,-168.397	0/0:50:50,0:50:1761:0:0:0,-15.0515,-158.772	0/0:66:66,0:66:2322:0:0:0,-19.868,-209.238	0/0:70:70,0:70:2432:0:0:0,-21.0721,-219.133	0/1:62:28,34:28:988:34:1191:-88.8305,0,-70.5668	0/1:83:52,31:52:1851:31:1031:-68.1025,0,-141.884	0/1:39:22,17:22:771:17:593:-41.9562,0,-57.9701	0/0:68:68,0:68:2373:0:0:0,-20.47,-213.829	0/1:40:22,18:22:760:18:640:-45.8881,0,-56.6747	0/0:31:31,0:31:1091:0:0:0,-9.33193,-98.4987	0/1:192:103,89:103:3639:89:3114:-222.689,0,-269.918	0/1:122:59,63:59:2099:63:2211:-162.527,0,-152.449	0/0:133:133,0:133:4668:0:0:0,-40.037,-420.287	0/0:62:60,2:60:2080:2:72:0,-11.8271,-180.633	0/1:65:44,21:44:1568:21:730:-46.4525,0,-121.845	0/0:76:76,0:76:2696:0:0:0,-22.8783,-242.886	0/0:407:406,1:406:14338:1:21:0,-120.452,-1288.13	0/0:265:265,0:265:9318:0:0:0,-79.7729,-838.599	0/0:36:36,0:36:1254:0:0:0,-10.8371,-113.161	0/1:313:193,120:193:6808:120:4240:-287.559,0,-518.575	0/0:108:108,0:108:3841:0:0:0,-32.5112,-345.887	0/1:87:50,37:50:1749:37:1287:-89.9257,0,-131.5	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:11:4,7:4:129:7:248:-19.3529,0,-8.61633	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:193:192,0:192:6724:0:0:0,-57.7978,-605.037	0/0:264:262,2:262:9231:2:72:0,-72.6352,-823.932	0/0:59:58,0:58:2004:0:0:0,-17.4597,-180.27	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:167:166,1:166:5885:1:32:0,-47.0727,-526.564	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.871	0/1:100:50,50:50:1748:50:1773:-129.748,0,-127.498	0/1:67:31,36:31:1082:36:1242:-91.9086,0,-77.5157	0/1:66:37,29:37:1298:29:1002:-70.6207,0,-97.2517	0/0:114:114,0:114:3989:0:0:0,-34.3174,-359.202	0/1:112:57,55:57:1995:55:1910:-138.458,0,-146.102	0/0:207:206,1:206:7240:1:36:0,-58.7149,-648.069	0/0:128:128,0:128:4507:0:0:0,-38.5318,-405.8	0/0:113:113,0:113:4000:0:0:0,-34.0164,-360.191	0/0:216:216,0:216:7613:0:0:0,-65.0225,-685.217	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:162:162,0:162:5713:0:0:0,-48.7669,-514.291	0/0:44:44,0:44:1552:0:0:0,-13.2453,-139.969	0/1:12:3,9:3:104:9:305:-24.1649,0,-6.09045	0/1:152:97,54:97:3403:54:1873:-123.166,0,-260.808	0/0:53:53,0:53:1871:0:0:0,-15.9546,-168.668	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:16:9,7:9:320:7:246:-17.6651,0,-24.3259	0/0:35:35,0:35:1219:0:0:0,-10.536,-110.01	0/0:143:142,1:142:5033:1:36:0,-39.449,-449.522	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:277:276,1:276:9764:1:36:0,-79.787,-874.631	0/1:163:86,77:86:3008:77:2651:-189.763,0,-221.886	0/0:54:50,4:50:1746:4:135:0,-3.77311,-144.94	0/0:121:121,0:121:4203:0:0:0,-36.4246,-377.827	0/1:156:84,71:84:2940:71:2527:-180.662,0,-217.817	0/0:109:108,1:108:3783:1:21:0,-30.7123,-338.571	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:91:91,0:91:3162:0:0:0,-27.3937,-284.805	0/1:86:48,38:48:1695:38:1271:-88.7932,0,-126.947	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/0:90:90,0:90:3194:0:0:0,-27.0927,-287.684	0/1:63:28,35:28:987:35:1188:-88.2514,0,-70.1781	0/0:115:114,1:114:3989:1:36:0,-31.0202,-355.604	0/0:217:217,0:217:7684:0:0:0,-65.3235,-691.463	0/0:72:71,1:71:2498:1:36:0,-18.0759,-221.461	0/0:137:137,0:137:4839:0:0:0,-41.2411,-435.657	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:122:120,2:120:4258:2:72:0,-29.8889,-376.565	0/1:98:46,51:46:1603:51:1781:-131.011,0,-114.988	0/0:247:247,0:247:8733:0:0:0,-74.3544,-785.969	0/0:106:106,0:106:3656:0:0:0,-31.9092,-329.249	0/0:57:56,1:56:1985:1:32:0,-13.9594,-175.723	0/0:63:62,1:62:2119:1:32:0,-15.7656,-187.773	0/0:145:145,0:145:5071:0:0:0,-43.6493,-456.352	0/1:40:19,21:19:664:21:733:-54.2485,0,-48.0433	0/0:81:81,0:81:2831:0:0:0,-24.3834,-255.027	0/0:65:65,0:65:2285:0:0:0,-19.5669,-205.911	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.499	0/1:87:48,39:48:1675:39:1329:-93.713,0,-124.846	0/1:81:29,52:29:1002:52:1773:-135.462,0,-66.1052	0/0:119:118,1:118:4121:1:36:0,-32.2243,-367.48	0/0:75:75,0:75:2646:0:0:0,-22.5772,-238.387
chr02	18986662	.	G	A	92311.3	PASS	AB=0.490698;ABP=11.5742;AC=31;AF=0.164894;AN=188;AO=5619;CIGAR=1X;DP=26639;DPB=26639;DPRA=3.22881;EPP=12204.5;EPPR=44903.2;GTI=3;LEN=1;MEANALT=1.16667;MQM=47.3511;MQMR=47.3542;NS=94;NUMALT=1;ODDS=0.332115;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201077;QR=745459;RO=21008;RPL=5619;RPP=12204.5;RPPR=44903.2;RPR=0;RUN=1;SAF=0;SAP=12204.5;SAR=5619;SRF=0;SRP=45621.3;SRR=21008;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2302:0:0:0,-19.5669,-204.816	0/0:267:267,0:267:9461:0:0:0,-80.375,-836.343	0/0:220:220,0:220:7851:0:0:0,-66.2266,-698.748	0/0:214:214,0:214:7593:0:0:0,-64.4204,-676.681	0/1:85:45,40:45:1603:40:1431:-102.758,0,-117.706	0/1:68:37,31:37:1302:31:1116:-78.743,0,-96.0311	0/1:58:26,32:26:920:32:1152:-85.8125,0,-65.1044	0/0:92:92,0:92:3257:0:0:0,-27.6948,-290.405	0/0:82:82,0:82:2892:0:0:0,-24.6845,-257.261	0/0:52:52,0:52:1825:0:0:0,-15.6536,-161.078	0/0:533:532,1:532:18726:1:27:0,-157.752,-1662.87	0/0:70:70,0:70:2459:0:0:0,-21.0721,-219.322	0/0:51:51,0:51:1793:0:0:0,-15.3525,-159.365	0/1:80:37,43:37:1320:43:1517:-111.825,0,-93.6259	0/1:40:22,18:22:792:18:648:-45.8564,0,-58.9286	0/1:71:38,33:38:1345:33:1188:-85.2633,0,-98.9284	0/0:46:46,0:46:1631:0:0:0,-13.8474,-145.848	0/1:22:11,11:11:396:11:396:-28.5798,0,-29.0455	0/0:144:144,0:144:5104:0:0:0,-43.3483,-453.099	0/1:134:68,66:68:2424:66:2364:-170.274,0,-175.251	0/1:116:58,58:58:2063:58:2080:-151.533,0,-148.296	0/0:108:107,1:107:3755:1:36:0,-29.3876,-332.815	0/0:88:85,3:85:3013:3:108:0,-17.2052,-257.965	0/1:41:24,17:24:848:17:603:-41.6224,0,-63.5517	0/0:60:60,0:60:2118:0:0:0,-18.0618,-189.438	0/0:199:199,0:199:7074:0:0:0,-59.905,-629.221	0/0:146:146,0:146:5182:0:0:0,-43.9504,-462.359	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.0243	0/1:207:79,127:79:2807:127:4549:-343.578,0,-188.254	0/0:399:397,0:397:14092:0:0:0,-119.509,-1256.79	0/1:186:74,112:74:2619:112:4000:-300.976,0,-178.415	0/0:805:801,3:801:28473:3:108:0,-233.06,-2529.13	0/0:953:951,2:951:33808:2:72:0,-280.454,-3006.15	0/0:819:818,1:818:28955:1:36:0,-243.041,-2567.08	0/1:2597:1711,885:1711:60696:885:31600:-2023.15,0,-4606.77	0/0:2833:2827,4:2827:100379:4:144:0,-839.811,-8905.16	0/0:127:127,0:127:4519:0:0:0,-38.2308,-402.725	0/0:166:166,0:166:5894:0:0:0,-49.971,-524.986	0/0:354:354,0:354:12541:0:0:0,-106.565,-1113.95	0/1:920:427,493:427:15138:493:17645:-1294.55,0,-1071.82	0/0:151:151,0:151:5382:0:0:0,-45.4555,-480.899	0/0:230:229,1:229:8155:1:36:0,-66.0493,-724.432	0/1:248:146,102:146:5176:102:3652:-250.798,0,-388.351	0/1:26:15,11:15:536:11:388:-26.8583,0,-40.0738	0/1:33:14,19:14:491:19:680:-50.4828,0,-34.3301	0/0:120:120,0:120:4287:0:0:0,-36.1236,-381.712	0/1:111:60,51:60:2127:51:1820:-128.825,0,-156.238	0/0:140:140,0:140:4953:0:0:0,-42.1442,-441.096	0/0:50:50,0:50:1766:0:0:0,-15.0515,-158.185	0/0:73:73,0:73:2586:0:0:0,-21.9752,-230.442	0/0:83:83,0:83:2951:0:0:0,-24.9855,-262.908	0/1:1451:630,821:630:22413:821:29447:-2185.8,0,-1560.83	0/0:127:126,1:126:4506:1:36:0,-34.664,-395.422	0/0:92:91,1:91:3235:1:36:0,-24.5711,-285.537	0/1:856:419,437:419:14865:437:15647:-1130.71,0,-1063.05	0/1:107:51,56:51:1815:56:2008:-146.927,0,-128.461	0/0:40:40,0:40:1419:0:0:0,-12.0412,-127.07	0/1:1159:528,630:528:18765:630:22558:-1657.93,0,-1321.31	0/1:766:313,453:313:11092:453:16237:-1216.17,0,-756.661	0/0:74:73,1:73:2620:1:36:0,-19.0886,-229.335	0/0:103:103,0:103:3663:0:0:0,-31.0061,-326.6	0/0:981:979,1:979:34781:1:32:0,-292.139,-3088.37	0/0:74:72,2:72:2566:2:72:0,-16.3413,-222.897	0/1:108:43,65:43:1536:65:2320:-174.336,0,-104.59	0/0:42:41,1:41:1445:1:36:0,-9.06449,-125.699	0/0:50:50,0:50:1784:0:0:0,-15.0515,-158.741	0/1:154:71,83:71:2531:83:2964:-218.737,0,-178.996	0/0:122:119,2:119:4246:2:72:0,-30.3268,-371.317	0/0:629:629,0:629:22353:0:0:0,-189.348,-1991.28	0/0:30:30,0:30:1068:0:0:0,-9.0309,-95.6159	0/1:44:17,27:17:600:27:957:-72.2077,0,-40.7639	0/0:571:570,0:570:20154:0:0:0,-171.587,-1794.07	0/0:79:79,0:79:2812:0:0:0,-23.7814,-249.875	0/1:61:32,28:32:1135:28:1008:-71.8383,0,-82.177	0/0:182:182,0:182:6464:0:0:0,-54.7875,-578.588	0/0:102:102,0:102:3603:0:0:0,-30.7051,-321.52	0/0:240:240,0:240:8533:0:0:0,-72.2472,-756.668	0/0:61:61,0:61:2168:0:0:0,-18.3628,-193.024	0/0:655:654,1:654:23213:1:36:0,-193.608,-2056.28	0/0:62:62,0:62:2203:0:0:0,-18.6639,-196.814	0/1:84:38,46:38:1328:46:1648:-122.017,0,-92.6182	0/0:142:142,0:142:5031:0:0:0,-42.7463,-448.782	0/0:48:48,0:48:1692:0:0:0,-14.4494,-151.57	0/0:54:54,0:54:1936:0:0:0,-16.2556,-172.642	0/0:33:33,0:33:1171:0:0:0,-9.93399,-104.165	0/0:85:85,0:85:2987:0:0:0,-25.5875,-266.561	0/1:26:11,15:11:392:15:540:-40.6819,0,-27.0299	0/0:58:58,0:58:2059:0:0:0,-17.4597,-183.128	0/0:65:65,0:65:2317:0:0:0,-19.5669,-205.904	0/0:610:609,1:609:21601:1:36:0,-180.05,-1920.72	0/1:1480:746,734:746:26436:734:26246:-1892.14,0,-1910.69	0/1:57:9,48:9:306:48:1709:-135.602,0,-10.5505	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.3806	0/0:65:65,0:65:2287:0:0:0,-19.5669,-204.339
chr02	18986669	.	A	G	87650.9	PASS	AB=0.480457;ABP=40.7798;AC=31;AF=0.164894;AN=188;AO=5483;CIGAR=1X;DP=26859;DPB=26859;DPRA=3.14435;EPP=11909.2;EPPR=46316.2;GTI=3;LEN=1;MEANALT=1.09524;MQM=47.4211;MQMR=47.3258;NS=94;NUMALT=1;ODDS=0.765166;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193839;QR=766164;RO=21372;RPL=5483;RPP=11909.2;RPPR=46316.2;RPR=0;RUN=1;SAF=0;SAP=11909.2;SAR=5483;SRF=0;SRP=46411.7;SRR=21372;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:66:66,0:66:2376:0:0:0,-19.868,-210.835	0/0:272:272,0:272:9772:0:0:0,-81.8802,-864.961	0/0:222:222,0:222:7959:0:0:0,-66.8287,-708.308	0/0:217:217,0:217:7795:0:0:0,-65.3235,-693.633	0/1:83:45,38:45:1599:38:1352:-96.3156,0,-118.356	0/1:67:37,29:37:1328:29:1040:-72.8885,0,-98.5421	0/1:57:24,33:24:860:33:1172:-87.9418,0,-60.0374	0/0:94:94,0:94:3357:0:0:0,-28.2968,-298.575	0/0:81:81,0:81:2912:0:0:0,-24.3834,-258.415	0/0:55:55,0:55:1967:0:0:0,-16.5566,-173.027	0/0:543:542,1:542:19433:1:36:0,-159.886,-1722.46	0/0:75:75,0:75:2687:0:0:0,-22.5772,-239.539	0/0:50:50,0:50:1792:0:0:0,-15.0515,-159.138	0/1:81:38,43:38:1368:43:1532:-112.684,0,-97.606	0/1:41:23,18:23:820:18:643:-45.1699,0,-61.1498	0/1:72:40,32:40:1440:32:1131:-79.8959,0,-107.011	0/0:47:47,0:47:1688:0:0:0,-14.1484,-150.873	0/1:21:10,11:10:360:11:396:-28.8808,0,-26.1364	0/0:150:150,0:150:5388:0:0:0,-45.1545,-478.554	0/1:130:65,65:65:2327:65:2294:-165.2,0,-168.395	0/1:116:58,58:58:2080:58:2055:-149.341,0,-150.145	0/0:107:107,0:107:3840:0:0:0,-32.2102,-342.405	0/0:87:86,1:86:3088:1:36:0,-22.6162,-269.859	0/1:42:24,18:24:864:18:623:-43.327,0,-64.6623	0/0:61:61,0:61:2184:0:0:0,-18.3628,-195.472	0/0:205:205,0:205:7355:0:0:0,-61.7111,-653.38	0/0:147:147,0:147:5284:0:0:0,-44.2514,-470.879	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.5376	0/1:205:82,123:82:2931:123:4355:-327.018,0,-199.351	0/0:413:413,0:413:14807:0:0:0,-124.325,-1319.42	0/1:184:73,111:73:2577:111:3910:-293.328,0,-175.249	0/0:813:813,0:813:29162:0:0:0,-244.737,-2598.7	0/0:978:977,1:977:35030:1:36:0,-290.829,-3115.96	0/0:832:831,1:831:29794:1:36:0,-246.954,-2639.83	0/1:2587:1740,846:1740:62341:846:29942:-1880.32,0,-4749.04	0/0:2861:2858,3:2858:102332:3:104:0,-851.615,-9077.88	0/0:127:127,0:127:4560:0:0:0,-38.2308,-406.325	0/0:169:169,0:169:6056:0:0:0,-50.8741,-539.541	0/0:358:358,0:358:12855:0:0:0,-107.769,-1141.66	0/1:923:440,482:440:15773:482:17058:-1243.12,0,-1125.86	0/0:149:149,0:149:5318:0:0:0,-44.8535,-475.544	0/0:242:242,0:242:8692:0:0:0,-72.8493,-773.217	0/1:244:145,99:145:5196:99:3496:-237.012,0,-390.986	0/1:26:16,10:16:572:10:348:-23.6426,0,-43.1075	0/1:31:14,17:14:504:17:608:-45.0239,0,-35.7232	0/0:120:120,0:120:4304:0:0:0,-36.1236,-383.203	0/1:108:60,48:60:2151:48:1695:-118.625,0,-158.13	0/0:144:144,0:144:5159:0:0:0,-43.3483,-459.344	0/0:51:51,0:51:1832:0:0:0,-15.3525,-164.014	0/0:73:73,0:73:2610:0:0:0,-21.9752,-232.516	0/0:84:84,0:84:3001:0:0:0,-25.2865,-267.007	0/1:1464:654,810:654:23440:810:28684:-2115.43,0,-1647.86	0/0:129:128,1:128:4604:1:36:0,-35.2661,-404.097	0/0:94:94,0:94:3363:0:0:0,-28.2968,-299.18	0/1:855:427,428:427:15335:428:15139:-1085.87,0,-1105.14	0/1:106:52,54:52:1868:54:1859:-134.487,0,-133.476	0/0:41:41,0:41:1476:0:0:0,-12.3422,-132.104	0/1:1154:529,624:529:18984:624:22053:-1616.09,0,-1341.83	0/1:764:318,446:318:11366:446:15754:-1174.35,0,-781.039	0/0:77:77,0:77:2750:0:0:0,-23.1793,-243.81	0/0:105:105,0:105:3776:0:0:0,-31.6081,-336.282	0/0:1004:1003,1:1003:35966:1:36:0,-298.661,-3189.91	0/0:75:75,0:75:2691:0:0:0,-22.5772,-239.155	0/1:106:45,61:45:1620:61:2167:-161.343,0,-112.481	0/0:43:42,1:42:1494:1:32:0,-9.75286,-130.452	0/0:52:52,0:52:1856:0:0:0,-15.6536,-164.825	0/1:156:72,84:72:2583:84:2971:-218.552,0,-182.973	0/0:128:127,1:127:4550:1:36:0,-34.9584,-400.673	0/0:631:631,0:631:22667:0:0:0,-189.95,-2019.68	0/0:31:31,0:31:1116:0:0:0,-9.33193,-99.8602	0/1:44:17,27:17:608:27:943:-71.0115,0,-41.46	0/0:569:569,0:569:20405:0:0:0,-171.286,-1815.55	0/0:80:80,0:80:2855:0:0:0,-24.0824,-253.533	0/1:63:35,28:35:1256:28:969:-67.8596,0,-91.8791	0/0:186:186,0:186:6680:0:0:0,-55.9916,-597.505	0/0:105:105,0:105:3764:0:0:0,-31.6081,-335.129	0/0:243:243,0:243:8717:0:0:0,-73.1503,-771.529	0/0:59:59,0:59:2107:0:0:0,-17.7608,-187.775	0/0:659:658,1:658:23572:1:36:0,-194.812,-2086.95	0/0:64:64,0:64:2296:0:0:0,-19.2659,-205.093	0/1:83:40,43:40:1436:43:1520:-110.988,0,-102.453	0/0:144:144,0:144:5164:0:0:0,-43.3483,-460.434	0/0:50:50,0:50:1800:0:0:0,-15.0515,-161.188	0/0:55:55,0:55:1971:0:0:0,-16.5566,-176.04	0/0:33:33,0:33:1180:0:0:0,-9.93399,-104.59	0/0:87:87,0:87:3115:0:0:0,-26.1896,-277.904	0/1:26:12,14:12:432:14:496:-36.7817,0,-30.5695	0/0:59:59,0:59:2120:0:0:0,-17.7608,-188.481	0/0:64:64,0:64:2292:0:0:0,-19.2659,-203.675	0/0:622:621,1:621:22281:1:36:0,-183.662,-1980.76	0/1:1486:765,721:765:27440:721:25465:-1821.66,0,-1998.89	0/1:60:11,49:11:392:49:1709:-134.446,0,-17.333	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.3716	0/0:65:65,0:65:2328:0:0:0,-19.5669,-208.21
chr02	19018362	.	C	A	178110	PASS	AB=0.572991;ABP=125.688;AC=157;AF=0.835106;AN=188;AO=8085;CIGAR=1X;DP=9231;DPB=9231;DPRA=0;EPP=17550.7;EPPR=2469.8;GTI=2;LEN=1;MEANALT=1.10638;MQM=59.6842;MQMR=59.9965;NS=94;NUMALT=1;ODDS=0.856751;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288603;QR=40592;RO=1136;RPL=1;RPP=17550.7;RPPR=2469.8;RPR=8084;RUN=1;SAF=0;SAP=17559.4;SAR=8085;SRF=0;SRP=2469.8;SRR=1136;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1684:-151.647,-14.1484,0	1/1:58:0,58:0:0:58:2069:-186.446,-17.4597,0	1/1:232:0,232:0:0:232:8311:-747.936,-69.839,0	1/1:185:0,184:0:0:184:6584:-592.239,-55.3895,0	0/1:46:26,20:26:936:20:712:-50.5593,0,-70.7121	0/1:35:14,21:14:504:21:756:-57.8312,0,-35.162	0/1:81:50,31:50:1792:31:1082:-73.2993,0,-137.179	1/1:211:0,210:0:0:210:7468:-670.749,-63.2163,0	1/1:77:0,77:0:0:77:2738:-246.634,-23.1793,0	1/1:77:0,77:0:0:77:2753:-248.008,-23.1793,0	1/1:48:0,48:0:0:48:1704:-153.637,-14.4494,0	1/1:135:0,135:0:0:135:4778:-430.12,-40.6391,0	1/1:112:0,111:0:0:111:3944:-354.791,-33.4143,0	0/1:86:40,46:40:1427:46:1639:-121.905,0,-102.838	0/1:84:32,52:32:1144:52:1864:-142.753,0,-77.983	0/1:88:43,45:43:1519:45:1601:-117.883,0,-110.512	1/1:97:0,97:0:0:97:3447:-310.29,-29.1999,0	0/1:47:15,32:15:540:32:1121:-87.0209,0,-34.7881	1/1:48:0,48:0:0:48:1728:-155.773,-14.4494,0	0/1:115:44,71:44:1567:71:2540:-194.225,0,-106.702	0/1:109:37,72:37:1328:72:2563:-198.092,0,-87.01	1/1:218:0,218:0:0:218:7801:-702.11,-65.6245,0	1/1:157:0,157:0:0:157:5621:-505.878,-47.2617,0	0/1:82:34,48:34:1220:48:1716:-130.027,0,-85.4223	1/1:73:0,73:0:0:73:2613:-235.407,-21.9752,0	1/1:268:0,268:0:0:268:9584:-862.499,-80.676,0	1/1:189:0,189:0:0:189:6763:-608.725,-56.8947,0	1/1:43:0,43:0:0:43:1520:-137.086,-12.9443,0	0/1:229:101,127:101:3608:127:4538:-339.589,0,-255.932	1/1:103:0,103:0:0:103:3675:-330.801,-31.0061,0	0/1:105:38,67:38:1355:67:2395:-184.193,0,-90.6416	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	1/1:20:0,20:0:0:20:712:-64.3985,-6.0206,0	1/1:224:0,224:0:0:224:7968:-717.133,-67.4307,0	1/1:127:0,127:0:0:127:4549:-409.52,-38.2308,0	1/1:63:0,63:0:0:63:2239:-201.719,-18.9649,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:84:0,83:0:0:83:2972:-267.353,-24.9855,0	1/1:29:0,29:0:0:29:1027:-92.7376,-8.72987,0	0/1:184:82,102:82:2940:102:3645:-272.84,0,-209.442	0/1:73:29,44:29:1036:44:1576:-120.153,0,-71.5787	0/1:82:41,41:41:1468:41:1472:-108.092,0,-107.732	1/1:108:0,107:0:0:107:3803:-341.95,-32.2102,0	0/1:80:21,59:21:748:59:2112:-166.238,0,-43.5629	1/1:215:1,214:1:36:214:7636:-683.572,-61.1232,0	1/1:83:0,82:0:0:82:2916:-262.312,-24.6845,0	1/1:152:0,151:0:0:151:5349:-480.714,-45.4555,0	1/1:109:0,109:0:0:109:3905:-351.638,-32.8123,0	0/1:13:8,5:8:265:5:180:-12.6363,0,-20.2587	1/1:82:0,81:0:0:81:2903:-261.015,-24.3834,0	1/1:39:0,39:0:0:39:1404:-126.658,-11.7402,0	0/1:10:5,5:5:176:5:176:-13.1664,0,-13.1747	0/1:154:72,82:72:2580:82:2888:-213.761,0,-186.091	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:16:10,6:10:360:6:212:-14.6083,0,-27.9278	1/1:61:0,61:0:0:61:2186:-196.993,-18.3628,0	1/1:134:0,134:0:0:134:4777:-430.06,-40.338,0	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	1/1:273:0,273:0:0:273:9787:-880.647,-82.1812,0	0/1:194:57,137:57:2026:137:4883:-381.118,0,-124.212	1/1:43:2,41:2:72:41:1468:-125.575,-6.10757,0	1/1:71:0,71:0:0:71:2534:-228.309,-21.3731,0	0/1:158:67,91:67:2403:91:3253:-245.326,0,-168.963	1/1:134:0,134:0:0:134:4780:-430.349,-40.338,0	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:45:0,44:0:0:44:1575:-141.608,-13.2453,0	0/1:50:23,27:23:824:27:960:-71.6648,0,-59.4318	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:113:0,113:0:0:113:4017:-361.694,-34.0164,0	0/1:70:24,46:24:860:46:1652:-127.895,0,-56.6497	1/1:155:0,155:0:0:155:5512:-496.149,-46.6597,0	1/1:162:0,162:0:0:162:5775:-519.854,-48.7669,0	1/1:275:0,275:0:0:275:9863:-887.194,-82.7833,0	1/1:17:0,17:0:0:17:608:-54.982,-5.11751,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:42:1,41:1:36:41:1476:-129.529,-9.04499,0	0/1:179:76,103:76:2718:103:3680:-277.246,0,-190.978	1/1:187:0,187:0:0:187:6695:-602.598,-56.2926,0	1/1:60:1,59:1:36:59:2096:-184.828,-14.4635,0	1/1:112:0,112:0:0:112:4003:-360.433,-33.7154,0	1/1:68:0,68:0:0:68:2423:-218.229,-20.47,0	1/1:224:0,224:0:0:224:7987:-718.812,-67.4307,0	0/1:34:13,21:13:468:21:752:-57.7631,0,-32.2246	1/1:92:0,92:0:0:92:3268:-294.319,-27.6948,0	1/1:90:0,90:0:0:90:3211:-289.172,-27.0927,0	1/1:68:0,68:0:0:68:2424:-218.405,-20.47,0	0/1:134:54,80:54:1922:80:2859:-217.184,0,-132.918	0/1:98:69,29:69:2462:29:1031:-63.5841,0,-192.332	1/1:152:0,152:0:0:152:5434:-488.744,-45.7566,0	1/1:128:0,128:0:0:128:4587:-412.985,-38.5318,0
chr02	19029256	.	A	G	18194.9	PASS	AB=0.534267;ABP=23.3987;AC=31;AF=0.164894;AN=188;AO=1081;CIGAR=1X;DP=6958;DPB=6958;DPRA=0.903482;EPP=2350.37;EPPR=12712.7;GTI=1;LEN=1;MEANALT=1.05128;MQM=59.9547;MQMR=59.898;NS=94;NUMALT=1;ODDS=0.875944;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38575;QR=210581;RO=5873;RPL=1081;RPP=2350.37;RPPR=12712.7;RPR=0;RUN=1;SAF=1081;SAP=2350.37;SAR=0;SRF=5873;SRP=12756.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.3786	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.887	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.596	0/0:163:163,0:163:5810:0:0:0,-49.0679,-523.012	0/1:28:9,19:9:324:19:680:-53.1003,0,-21.077	0/1:28:8,20:8:284:20:716:-56.3389,0,-17.4745	0/1:84:47,37:47:1688:37:1328:-94.5353,0,-126.92	0/0:70:69,1:69:2467:1:36:0,-17.4738,-218.685	0/0:71:69,2:69:2476:2:72:0,-14.5364,-216.257	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.089	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.891	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.655	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:56:17,39:17:612:39:1382:-107.82,0,-38.5558	0/1:53:24,29:24:864:29:1040:-77.9598,0,-62.1276	0/1:66:25,41:25:896:41:1457:-111.557,0,-61.0924	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:19:9,10:9:320:10:348:-25.9356,0,-23.4228	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:100:48,52:48:1728:52:1856:-137.217,0,-125.702	0/1:151:84,67:84:2985:67:2384:-169.363,0,-223.426	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.344	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:47:21,26:21:756:26:936:-70.4111,0,-54.2188	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:203:203,0:203:7269:0:0:0,-61.1091,-654.246	0/0:343:343,0:343:12305:0:0:0,-103.253,-1107.28	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:224:100,124:100:3596:124:4420:-330.533,0,-256.405	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.231	0/1:81:32,49:32:1144:49:1747:-133.13,0,-78.3931	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.386	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:124:123,0:123:4416:0:0:0,-37.0267,-397.247	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82	0/0:42:41,1:41:1476:1:36:0,-9.04498,-129.538	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:132:132,0:132:4735:0:0:0,-39.736,-426.218	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:107:32,74:32:1148:74:2616:-203.416,0,-71.3609	0/1:24:10,13:10:360:13:464:-34.8142,0,-25.4608	0/1:41:18,23:18:644:23:824:-62.1411,0,-45.9476	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.617	0/1:89:32,57:32:1152:57:2044:-157.44,0,-77.1985	0/0:109:108,1:108:3869:1:36:0,-29.214,-344.802	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.564	0/0:151:151,0:151:5412:0:0:0,-45.4555,-487.177	0/0:231:230,0:230:8221:0:0:0,-69.2369,-739.564	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:121:120,1:120:4320:1:36:0,-32.8264,-385.37	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.112	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:153:92,61:92:3304:61:2180:-150.402,0,-251.498	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.176	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.603	0/1:31:14,17:14:504:17:612:-46.0243,0,-36.3662	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.539	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.758	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:225:225,0:225:8057:0:0:0,-67.7317,-725.142	0/1:143:79,64:79:2820:64:2293:-163.584,0,-210.99	0/0:72:68,4:68:2444:4:144:0,-8.36054,-206.901	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.838	0/1:68:24,44:24:860:44:1565:-120.67,0,-57.2518	0/0:137:136,1:136:4888:1:36:0,-37.6428,-436.426	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.297	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.623	0/1:43:22,21:22:792:21:752:-55.062,0,-58.6587	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:170:170,0:170:6096:0:0:0,-51.1751,-548.51	0/1:82:52,30:52:1872:30:1080:-72.8288,0,-144.075	0/0:95:95,0:95:3392:0:0:0,-28.5978,-305.398	0/0:134:134,0:134:4805:0:0:0,-40.338,-432.601	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:81:39,42:39:1404:42:1496:-110.551,0,-102.276	0/0:96:94,2:94:3376:2:72:0,-22.0622,-297.21	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.298	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.921	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1742	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.326	0/1:14:8,6:8:288:6:216:-15.5752,0,-22.053	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.929	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:111:54,57:54:1929:57:2027:-149.288,0,-140.47	0/1:30:8,22:8:288:22:784:-61.853,0,-17.2365	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.532	0/0:74:74,0:74:2649:0:0:0,-22.2762,-238.653
chr02	19029265	.	CATA	GATG,GATA	151556	PASS	AB=0.462798,0.534226;ABP=27.2455,23.523;AC=157,31;AF=0.835106,0.164894;AN=188;AO=5884,1086;CIGAR=1X2M1X,1X3M;DP=7002;DPB=7002;DPRA=0,0.894664;EPP=12780,2361.23;EPPR=5.18177;GTI=1;LEN=4,1;MEANALT=1.67021,2.19444;MQM=59.8907,59.953;MQMR=60;NS=94;NUMALT=2;ODDS=0.656191;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=207065,38703;QR=36;RO=1;RPL=5884,1086;RPP=12780,2361.23;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=5884,1086;SAP=12780,2361.23;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29,0:0:0:29,0:975,0:-88.0454,-8.72987,0,-88.0454,-8.72987,-88.0454	1/1:45:0,44,0:0:0:44,0:1534,0:-138.096,-13.2453,0,-138.096,-13.2453,-138.096	1/1:88:0,88,0:0:0:88,0:3069,0:-276.436,-26.4906,0,-276.436,-26.4906,-276.436	1/1:167:0,167,0:0:0:167,0:5840,0:-525.722,-50.272,0,-525.722,-50.272,-525.722	1/2:28:0,9,19:0:0:9,19:309,680:-80.8949,-55.8096,-53.1003,-25.4332,0,-19.7136	1/2:28:0,8,20:0:0:8,20:287,720:-82.5175,-59.1082,-56.6999,-23.7682,0,-17.7476	1/2:85:0,48,37:0:0:48,37:1718,1328:-248.782,-108.684,-94.2343,-140.456,0,-129.318	1/1:69:0,68,1:0:0:68,1:2402,36:-216.076,-20.47,0,-213.139,-17.1728,-212.838	1/1:71:0,71,0:0:0:71,0:2464,0:-222.013,-21.3731,0,-222.013,-21.3731,-222.013	1/1:71:0,71,0:0:0:71,0:2488,0:-224.054,-21.3731,0,-224.054,-21.3731,-224.054	1/1:43:0,43,0:0:0:43,0:1493,0:-134.658,-12.9443,0,-134.658,-12.9443,-134.658	1/1:48:0,48,0:0:0:48,0:1665,0:-150.115,-14.4494,0,-150.115,-14.4494,-150.115	1/1:42:0,42,0:0:0:42,0:1472,0:-132.773,-12.6433,0,-132.773,-12.6433,-132.773	1/2:55:0,17,38:0:0:17,38:595,1360:-159.669,-111.261,-106.144,-48.7598,0,-37.3206	1/2:53:0,24,29:0:0:24,29:841,1035:-153.163,-84.7338,-77.5091,-68.7819,0,-60.052	1/2:64:0,24,40:0:0:24,40:822,1427:-183.405,-116.686,-109.461,-67.067,0,-55.0258	1/1:27:0,27,0:0:0:27,0:966,0:-87.2576,-8.12781,0,-87.2576,-8.12781,-87.2576	1/2:19:0,9,9:0:0:9,9:318,309:-50.9751,-25.0733,-22.364,-25.8919,0,-23.1827	1/1:23:0,23,0:0:0:23,0:811,0:-73.3104,-6.92369,0,-73.3104,-6.92369,-73.3104	1/2:101:0,48,53:0:0:48,53:1700,1865:-290.653,-152.17,-137.721,-138.835,0,-122.881	1/2:152:0,84,68:0:0:84,68:2928,2419:-435.611,-197.496,-172.209,-238.468,0,-217.998	1/1:62:0,61,0:0:0:61,0:2155,0:-193.856,-18.3628,0,-193.856,-18.3628,-193.856	1/1:37:0,37,0:0:0:37,0:1282,0:-115.674,-11.1381,0,-115.674,-11.1381,-115.674	1/2:47:0,21,26:0:0:21,26:734,932:-136.078,-76.3721,-70.0504,-60.0594,0,-52.2326	1/1:67:0,66,0:0:0:66,0:2324,0:-209.06,-19.868,0,-209.06,-19.868,-209.06	1/1:206:0,205,0:0:0:205,0:7253,0:-652.456,-61.7112,0,-652.456,-61.7112,-652.456	1/1:342:0,338,0:0:0:338,0:11867,0:-1067.5,-101.748,0,-1067.5,-101.748,-1067.5	1/1:17:0,17,0:0:0:17,0:599,0:-54.2378,-5.11751,0,-54.2378,-5.11751,-54.2378	1/2:224:0,101,122:0:0:101,122:3592,4371:-649.235,-356.517,-326.113,-292.774,0,-256.048	1/1:136:0,135,0:0:0:135,0:4771,0:-429.2,-40.6391,0,-429.2,-40.6391,-429.2	1/2:82:0,32,50:0:0:32,50:1105,1792:-236.256,-146.511,-136.878,-90.0952,0,-75.0437	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:20:0,20,0:0:0:20,0:711,0:-64.3164,-6.0206,0,-64.3164,-6.0206,-64.3164	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:17:0,9,8:0:0:9,8:323,288:-50.2033,-23.8592,-21.1499,-26.7034,0,-24.2952	1/1:23:0,23,0:0:0:23,0:813,0:-73.4902,-6.92369,0,-73.4902,-6.92369,-73.4902	1/1:126:0,125,0:0:0:125,0:4412,0:-396.891,-37.6288,0,-396.891,-37.6288,-396.891	1/1:91:0,90,0:0:0:90,0:3165,0:-284.717,-27.0927,0,-284.717,-27.0927,-284.717	1/1:42:0,41,0:0:0:41,0:1446,0:-130.143,-12.3422,0,-130.143,-12.3422,-130.143	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:134:0,134,0:0:0:134,0:4666,0:-420.072,-40.338,0,-420.072,-40.338,-420.072	1/1:30:0,30,0:0:0:30,0:1074,0:-96.9728,-9.0309,0,-96.9728,-9.0309,-96.9728	1/2:107:0,32,75:0:0:32,75:1136,2651:-308.818,-216.257,-206.624,-92.9161,0,-70.3389	1/2:25:0,11,14:0:0:11,14:382,491:-71.3597,-40.3067,-36.9954,-31.4017,0,-27.1873	1/2:42:0,18,24:0:0:18,24:636,856:-121.93,-70.1364,-64.7178,-52.1486,0,-44.9239	1/1:64:0,64,0:0:0:64,0:2258,0:-203.479,-19.2659,0,-203.479,-19.2659,-203.479	1/2:89:0,33,56:0:0:33,56:1161,2016:-259.362,-164.855,-154.921,-94.8612,0,-78.0035	1/1:109:0,107,1:0:0:107,1:3772,36:-339.315,-32.2102,0,-336.378,-29.2728,-336.077	1/1:74:0,73,0:0:0:73,0:2589,0:-232.898,-21.9752,0,-232.898,-21.9752,-232.898	1/1:151:0,150,0:0:0:150,0:5286,0:-475.515,-45.1545,0,-475.515,-45.1545,-475.515	1/1:233:0,233,0:0:0:233,0:8230,0:-740.714,-70.14,0,-740.714,-70.14,-740.714	1/2:6:0,3,3:0:0:3,3:102,108:-17.4355,-9.17208,-8.26899,-8.61329,0,-7.7102	1/1:122:0,120,0:0:0:120,0:4286,0:-385.555,-36.1236,0,-385.555,-36.1236,-385.555	1/1:74:0,73,0:0:0:73,0:2608,0:-234.676,-21.9752,0,-234.676,-21.9752,-234.676	1/2:12:0,3,9:0:0:3,9:108,324:-35.6088,-26.7966,-25.8935,-9.17208,0,-6.46281	1/2:157:0,94,63:0:0:94,63:3296,2228:-449.994,-181.801,-153.504,-268.546,0,-249.581	1/1:13:0,13,0:0:0:13,0:447,0:-40.5127,-3.91339,0,-40.5127,-3.91339,-40.5127	1/2:9:0,4,5:0:0:4,5:131,180: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chr02	19029327	.	G	T	102360	PASS	AB=0.421578;ABP=115.403;AC=153;AF=0.822581;AN=186;AO=4619;CIGAR=1X;DP=5845;DPB=5845;DPRA=63.5217;EPP=9467.96;EPPR=2594.03;GTI=5;LEN=1;MEANALT=1.01087;MQM=59.9987;MQMR=60;NS=93;NUMALT=1;ODDS=0.818712;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164374;QR=43611;RO=1225;RPL=66;RPP=9467.96;RPPR=2594.03;RPR=4553;RUN=1;SAF=0;SAP=10033;SAR=4619;SRF=0;SRP=2663.06;SRR=1225;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:70:0,70:0:0:70:2487:-224.083,-21.0721,0	1/1:56:0,55:0:0:55:1950:-175.414,-16.5567,0	1/1:108:2,106:2:72:106:3783:-333.832,-25.6745,0	0/1:48:26,22:26:928:22:788:-56.7954,0,-69.3888	0/1:44:34,10:34:1183:10:360:-19.499,0,-93.5285	0/1:76:39,37:39:1385:37:1328:-96.944,0,-102.069	1/1:48:0,48:0:0:48:1702:-153.465,-14.4494,0	1/1:105:0,105:0:0:105:3725:-335.452,-31.6082,0	1/1:70:0,70:0:0:70:2500:-225.253,-21.0721,0	1/1:17:0,17:0:0:17:599:-54.2381,-5.11751,0	1/1:57:0,57:0:0:57:2023:-182.342,-17.1587,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:98:58,40:58:2056:40:1424:-98.9565,0,-155.811	0/1:51:31,20:31:1104:20:696:-47.6071,0,-84.3181	0/1:36:16,20:16:563:20:701:-52.5746,0,-40.1621	1/1:60:0,60:0:0:60:2139:-192.778,-18.0618,0	0/1:48:32,16:32:1144:16:572:-37.364,0,-88.8201	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:71:46,25:46:1648:25:881:-58.2327,0,-127.235	0/1:142:83,59:83:2972:59:2116:-147.962,0,-224.967	1/1:75:0,75:0:0:75:2673:-240.814,-22.5773,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:72:47,25:47:1662:25:896:-59.2862,0,-128.192	1/1:17:0,17:0:0:17:589:-53.3333,-5.11751,0	1/1:225:1,224:1:36:224:7929:-710.038,-64.1335,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:34:0,34:0:0:34:1201:-108.394,-10.235,0	0/1:137:86,51:86:3079:51:1828:-123.56,0,-236.096	1/1:88:0,88:0:0:88:3114:-280.486,-26.4906,0	0/1:114:67,47:67:2408:47:1688:-117.89,0,-182.659	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	.:.:.:.:.:.:.:.	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:170:1,169:1:36:169:5980:-534.712,-47.5768,0	1/1:94:0,94:0:0:94:3364:-302.976,-28.2968,0	1/1:26:0,26:0:0:26:923:-83.3868,-7.82678,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:90:0,90:0:0:90:3212:-289.304,-27.0927,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:72:52,20:52:1859:20:716:-43.0936,0,-145.915	0/1:41:18,23:18:648:23:798:-59.7919,0,-46.3097	0/1:66:38,28:38:1340:28:1008:-71.1684,0,-101.029	1/1:53:0,53:0:0:53:1887:-170.108,-15.9546,0	0/1:77:49,28:49:1760:28:993:-66.5032,0,-135.505	1/1:85:2,83:2:72:83:2968:-260.517,-18.7508,0	1/1:80:0,80:0:0:80:2845:-256.287,-24.0824,0	1/1:97:0,97:0:0:97:3447:-310.444,-29.1999,0	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:83:0,83:0:0:83:2963:-266.903,-24.9855,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:63:34,29:34:1203:29:1021:-73.2354,0,-89.6101	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:14:9,5:9:315:5:180:-12.3376,0,-24.4728	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:93:1,92:1:36:92:3244:-288.583,-24.3975,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:201:0,201:0:0:201:7135:-642.213,-60.507,0	0/1:138:66,72:66:2349:72:2568:-189.828,0,-170.125	0/1:56:6,50:6:201:50:1788:-144.345,0,-1.55936	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:145:85,60:85:3052:60:2144:-149.578,0,-231.259	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:58:31,27:31:1095:27:957:-68.9841,0,-81.3994	1/1:32:0,32:0:0:32:1125:-101.555,-9.63296,0	1/1:55:0,55:0:0:55:1952:-175.956,-16.5567,0	0/1:42:21,21:21:748:21:743:-54.5501,0,-55.002	1/1:120:0,120:0:0:120:4260:-383.578,-36.1236,0	1/1:134:0,134:0:0:134:4785:-430.806,-40.338,0	1/1:36:0,36:0:0:36:1292:-116.58,-10.8371,0	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:68:0,68:0:0:68:2423:-218.326,-20.47,0	0/1:79:47,32:47:1662:32:1148:-79.8485,0,-126.085	1/1:109:0,109:0:0:109:3877:-349.125,-32.8123,0	1/1:114:0,114:0:0:114:4069:-366.396,-34.3174,0	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	1/1:94:0,94:0:0:94:3340:-300.817,-28.2968,0	0/1:36:26,10:26:923:10:360:-21.9072,0,-72.5497	1/1:57:0,57:0:0:57:2020:-182.073,-17.1587,0	1/1:44:0,44:0:0:44:1560:-140.692,-13.2453,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:182:97,85:97:3439:85:3003:-215.714,0,-254.935	0/1:74:56,18:56:1985:18:644:-36.0144,0,-156.646	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	1/1:63:0,63:0:0:63:2229:-200.873,-18.9649,0
chr02	19033522	.	A	C	127814	PASS	AB=0.543884;ABP=39.793;AC=155;AF=0.824468;AN=188;AO=5851;CIGAR=1X;DP=6860;DPB=6860;DPRA=0;EPP=12708.3;EPPR=2189.68;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9415;MQMR=59.9782;NS=94;NUMALT=1;ODDS=3.59988;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208596;QR=36001;RO=1007;RPL=5851;RPP=12708.3;RPPR=2189.68;RPR=0;RUN=1;SAF=0;SAP=12708.3;SAR=5851;SRF=0;SRP=2189.68;SRR=1007;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:156:0,156:0:0:156:5573:-501.423,-46.9607,0	1/1:76:0,76:0:0:76:2693:-242.614,-22.8783,0	1/1:147:0,147:0:0:147:5216:-469.537,-44.2514,0	0/1:50:21,29:21:748:29:1032:-78.142,0,-52.5938	0/1:59:26,33:26:924:33:1170:-87.8448,0,-65.7169	0/1:72:26,46:26:932:46:1636:-125.855,0,-62.5247	1/1:140:0,140:0:0:140:4979:-448.248,-42.1442,0	1/1:112:0,112:0:0:112:3977:-357.888,-33.7154,0	1/1:80:0,80:0:0:80:2860:-257.635,-24.0824,0	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	1/1:71:0,71:0:0:71:2532:-228.132,-21.3731,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:94:56,38:56:2003:38:1368:-95.124,0,-152.246	0/1:52:29,23:29:1044:23:824:-58.8298,0,-78.6212	0/1:54:23,31:23:828:31:1104:-83.415,0,-58.5885	1/1:75:0,75:0:0:75:2687:-241.884,-22.5773,0	0/1:51:27,24:27:963:24:860:-62.3693,0,-71.6334	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	0/1:102:52,50:52:1855:50:1784:-130.135,0,-136.524	0/1:108:46,62:46:1644:62:2189:-164.764,0,-115.735	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0	1/1:52:0,52:0:0:52:1845:-166.328,-15.6536,0	0/1:98:42,56:42:1504:56:1996:-149.636,0,-106.154	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:226:0,226:0:0:226:8076:-726.852,-68.0328,0	1/1:114:0,114:0:0:114:4051:-364.761,-34.3174,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:144:51,93:51:1809:93:3324:-256.03,0,-119.741	1/1:93:0,93:0:0:93:3304:-297.578,-27.9958,0	0/1:94:45,49:45:1616:49:1740:-128.587,0,-117.347	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:6:0,6:0:0:6:208:-19.0585,-1.80618,0	1/1:193:0,193:0:0:193:6904:-621.428,-58.0988,0	1/1:64:0,64:0:0:64:2280:-205.462,-19.2659,0	0/1:86:37,49:37:1319:49:1743:-131.265,0,-93.1226	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:130:0,130:0:0:130:4652:-418.842,-39.1339,0	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	0/1:89:34,55:34:1208:55:1968:-150.591,0,-82.2344	0/1:105:56,49:56:2004:49:1755:-126.621,0,-149.025	0/1:74:34,40:34:1220:40:1427:-106.451,0,-87.8306	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	0/1:87:49,38:49:1756:38:1339:-94.6196,0,-132.134	1/1:84:1,83:1:36:83:2955:-262.583,-21.6882,0	1/1:74:0,74:0:0:74:2644:-238.205,-22.2762,0	1/1:114:0,114:0:0:114:4088:-368.105,-34.3174,0	1/1:107:0,107:0:0:107:3812:-343.279,-32.2102,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:85:0,85:0:0:85:3030:-272.93,-25.5876,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/1:82:33,49:33:1171:49:1725:-130.071,0,-81.0122	1/1:66:0,66:0:0:66:2342:-211.04,-19.868,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	1/1:85:0,85:0:0:85:3032:-273.087,-25.5876,0	1/1:98:1,97:1:36:97:3471:-309.003,-25.9027,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:87:0,87:0:0:87:3080:-277.43,-26.1896,0	0/1:107:49,58:49:1760:58:2068:-154.181,0,-126.474	0/1:64:7,57:7:252:57:2040:-164.606,0,-3.76304	1/1:55:0,54:0:0:54:1936:-174.157,-16.2556,0	0/1:112:38,73:38:1360:73:2600:-200.475,0,-88.9265	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	1/1:47:0,47:0:0:47:1675:-151.036,-14.1484,0	1/1:80:1,79:1:36:79:2814:-249.901,-20.4841,0	0/1:83:48,35:48:1716:35:1252:-87.9996,0,-129.74	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/1:31:8,23:8:288:23:828:-65.5122,0,-16.9355	1/1:169:1,168:1:21:168:6002:-538.186,-48.7741,0	1/1:112:0,112:0:0:112:4003:-360.459,-33.7154,0	1/1:35:0,35:0:0:35:1236:-111.387,-10.5361,0	1/1:71:0,71:0:0:71:2543:-229.12,-21.3731,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:69:0,69:0:0:69:2450:-220.75,-20.7711,0	0/1:54:23,31:23:824:31:1108:-83.7754,0,-58.2277	1/1:144:1,143:1:36:143:5090:-454.643,-39.75,0	1/1:105:0,105:0:0:105:3748:-337.521,-31.6082,0	1/1:83:0,83:0:0:83:2976:-268.07,-24.9855,0	1/1:73:0,73:0:0:73:2599:-234.159,-21.9752,0	1/1:125:0,125:0:0:125:4433:-399.143,-37.6288,0	0/1:38:21,17:21:748:17:608:-43.6129,0,-56.2062	1/1:58:0,58:0:0:58:2060:-185.672,-17.4597,0	1/1:50:0,50:0:0:50:1771:-159.664,-15.0515,0	1/1:59:0,59:0:0:59:2107:-189.899,-17.7608,0	0/1:103:59,44:59:2120:44:1564:-110.045,0,-160.062	0/1:64:36,28:36:1284:28:974:-68.7045,0,-96.5975	1/1:45:0,45:0:0:45:1602:-144.469,-13.5464,0	1/1:88:0,88:0:0:88:3151:-283.814,-26.4906,0
chr02	19037417	.	G	A	129539	PASS	AB=0.529052;ABP=19.7911;AC=155;AF=0.824468;AN=188;AO=5907;CIGAR=1X;DP=6995;DPB=6995;DPRA=0;EPP=12829.9;EPPR=2354.71;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.9904;MQMR=60;NS=94;NUMALT=1;ODDS=3.67058;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211387;QR=38593;RO=1083;RPL=5907;RPP=12829.9;RPPR=2354.71;RPR=0;RUN=1;SAF=5907;SAP=12829.9;SAR=0;SRF=1083;SRP=2354.71;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:87:1,86:1:36:86:3076:-273.47,-22.5913,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:111:0,111:0:0:111:3962:-356.769,-33.4143,0	1/1:188:0,188:0:0:188:6710:-603.976,-56.5936,0	0/1:59:27,32:27:968:32:1152:-86.2294,0,-69.6766	0/1:33:10,23:10:360:23:820:-64.188,0,-22.8103	0/1:92:34,58:34:1220:58:2080:-159.776,0,-82.412	1/1:101:0,101:0:0:101:3609:-324.946,-30.404,0	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	1/1:65:0,65:0:0:65:2320:-209.061,-19.567,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	0/1:70:36,34:36:1270:34:1212:-88.3142,0,-93.5292	0/1:54:20,34:20:712:34:1220:-93.8512,0,-48.151	0/1:56:27,28:27:963:28:989:-72.3997,0,-70.0696	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:28:15,13:15:523:13:459:-33.2152,0,-38.9696	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:124:64,60:64:2284:60:2143:-155.809,0,-168.494	0/1:117:52,65:52:1864:65:2321:-173.928,0,-132.819	1/1:89:0,89:0:0:89:3188:-287.143,-26.7917,0	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	0/1:91:44,47:44:1576:47:1684:-124.453,0,-114.738	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:193:1,192:1:36:192:6864:-614.229,-54.5005,0	1/1:191:0,191:0:0:191:6860:-617.466,-57.4967,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:273:141,132:141:5036:132:4726:-343.318,0,-371.206	1/1:98:0,98:0:0:98:3508:-315.93,-29.5009,0	0/1:63:33,29:33:1161:29:1031:-74.0791,0,-85.7713	1/1:3:0,3:0:0:3:88:-8.21104,-0.90309,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:173:0,173:0:0:173:6166:-555.04,-52.0782,0	1/1:113:0,113:0:0:113:4051:-364.776,-34.0164,0	0/1:62:28,34:28:1004:34:1211:-90.6317,0,-72.012	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:92:0,92:0:0:92:3286:-295.959,-27.6948,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:137:78,59:78:2804:59:2105:-148.477,0,-211.358	0/1:63:27,36:27:931:36:1292:-97.6189,0,-65.1339	0/1:53:21,32:21:744:32:1143:-87.2247,0,-51.3297	1/1:91:0,91:0:0:91:3256:-293.261,-27.3937,0	0/1:72:30,42:30:1072:42:1508:-114.339,0,-75.1183	1/1:133:0,133:0:0:133:4772:-429.636,-40.037,0	1/1:100:0,100:0:0:100:3579:-322.317,-30.103,0	1/1:85:0,85:0:0:85:3035:-273.379,-25.5876,0	1/1:114:0,114:0:0:114:4096:-368.824,-34.3174,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:74:0,74:0:0:74:2643:-238.117,-22.2762,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:107:59,48:59:2092:48:1689:-120.085,0,-156.34	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:65:0,65:0:0:65:2314:-208.521,-19.567,0	1/1:121:0,121:0:0:121:4330:-389.874,-36.4246,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:113:0,113:0:0:113:4064:-365.945,-34.0164,0	0/1:126:51,75:51:1820:75:2684:-203.875,0,-126.151	0/1:51:5,46:5:180:46:1648:-133.256,0,-1.19953	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	0/1:125:52,72:52:1868:72:2584:-195.121,0,-130.712	1/1:112:4,108:4:144:108:3856:-333.923,-20.4017,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:53:30,23:30:1056:23:819:-58.0767,0,-79.3963	1/1:16:1,15:1:36:15:532:-44.6148,-1.21821,0	1/1:122:0,122:0:0:122:4357:-392.304,-36.7257,0	0/1:51:27,24:27:968:24:852:-61.6479,0,-72.0848	1/1:126:0,126:0:0:126:4509:-405.977,-37.9298,0	1/1:114:0,114:0:0:114:4096:-368.824,-34.3174,0	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:87:35,52:35:1243:52:1856:-141.13,0,-85.9843	1/1:162:0,162:0:0:162:5797:-521.843,-48.7669,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:50:0,50:0:0:50:1782:-160.661,-15.0515,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:141:1,140:1:27:140:5015:-448.794,-39.7454,0	0/1:18:10,8:10:360:8:279:-20.029,0,-27.3258	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:60:0,60:0:0:60:2139:-192.777,-18.0618,0	1/1:46:0,44:0:0:44:1584:-142.492,-13.2453,0	0/1:126:60,66:60:2124:66:2372:-175.808,0,-153.499	0/1:61:43,18:43:1535:18:644:-39.9278,0,-120.08	1/1:90:0,90:0:0:90:3224:-290.382,-27.0927,0	1/1:91:0,91:0:0:91:3257:-293.349,-27.3937,0
chr02	19055414	.	A	G	106128	PASS	AB=0.499711;ABP=3.01155;AC=154;AF=0.827957;AN=186;AO=4843;CIGAR=1X;DP=5733;DPB=5733;DPRA=62.3043;EPP=10519.5;EPPR=1931.28;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.6822;MQMR=59.9741;NS=93;NUMALT=1;ODDS=0.0945829;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173238;QR=31753;RO=888;RPL=4843;RPP=10519.5;RPPR=1931.28;RPR=0;RUN=1;SAF=4843;SAP=10519.5;SAR=0;SRF=888;SRP=1931.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:529:-47.9404,-4.51545,0	1/1:98:0,98:0:0:98:3512:-316.254,-29.5009,0	1/1:60:0,60:0:0:60:2143:-193.115,-18.0618,0	1/1:120:0,120:0:0:120:4308:-387.809,-36.1236,0	0/1:39:21,18:21:748:18:644:-46.5318,0,-55.9051	0/1:42:19,23:19:676:23:828:-62.1845,0,-48.5247	0/1:108:53,55:53:1896:55:1948:-143.063,0,-138.407	1/1:105:0,105:0:0:105:3725:-335.348,-31.6082,0	1/1:45:0,45:0:0:45:1597:-144.018,-13.5464,0	1/1:58:0,58:0:0:58:2084:-187.818,-17.4597,0	1/1:17:0,17:0:0:17:612:-55.3948,-5.11751,0	1/1:53:0,53:0:0:53:1876:-168.739,-15.9546,0	1/1:51:0,51:0:0:51:1821:-163.956,-15.3525,0	0/1:43:17,26:17:593:26:932:-71.25,0,-40.75	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/1:36:18,18:18:648:18:637:-46.8108,0,-47.8086	1/1:43:0,43:0:0:43:1544:-139.223,-12.9443,0	0/1:30:13,17:13:464:17:612:-46.3825,0,-33.0666	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:94:39,55:39:1392:55:1962:-148.557,0,-97.2822	0/1:90:51,39:51:1836:39:1388:-98.1203,0,-138.428	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:59:1,58:1:36:58:2072:-183.124,-14.1625,0	0/1:107:66,41:66:2364:41:1472:-100.561,0,-180.808	1/1:61:0,61:0:0:61:2183:-196.726,-18.3628,0	1/1:261:2,259:2:72:259:9261:-826.139,-71.7321,0	1/1:168:0,168:0:0:168:6010:-540.991,-50.573,0	1/1:19:1,18:1:36:18:640:-54.331,-2.1213,0	0/1:119:56,63:56:1993:63:2260:-167.84,0,-143.82	1/1:112:0,112:0:0:112:4020:-361.98,-33.7154,0	0/1:78:36,42:36:1277:42:1512:-112.894,0,-91.7508	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:130:0,130:0:0:130:4651:-418.704,-39.1339,0	1/1:156:0,156:0:0:156:5585:-502.708,-46.9607,0	0/1:32:20,12:20:716:12:417:-28.219,0,-55.0897	.:.:.:.:.:.:.:.	1/1:104:0,104:0:0:104:3736:-336.379,-31.3071,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:79:41,38:41:1476:38:1368:-99.6349,0,-109.355	0/1:45:22,23:22:784:23:828:-61.2916,0,-57.3376	0/1:31:15,16:15:532:16:549:-40.398,0,-38.8812	1/1:72:0,72:0:0:72:2584:-232.776,-21.6742,0	0/1:64:32,32:32:1148:32:1144:-83.9898,0,-84.3639	1/1:109:9,100:9:324:100:3560:-291.076,-3.30642,0	1/1:80:1,79:1:36:79:2817:-250.123,-20.4841,0	1/1:57:0,57:0:0:57:2048:-184.588,-17.1587,0	1/1:137:0,137:0:0:137:4905:-441.542,-41.2411,0	0/1:10:4,6:4:144:6:216:-16.7739,0,-10.3033	1/1:83:0,83:0:0:83:2980:-268.427,-24.9855,0	1/1:27:0,27:0:0:27:972:-87.797,-8.12781,0	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:67:17,49:17:612:49:1756:-138.092,0,-35.1856	1/1:38:0,38:0:0:38:1368:-123.415,-11.4391,0	0/1:5:2,3:2:72:3:94:-7.25242,0,-5.33157	0/1:23:13,10:13:468:10:351:-25.003,0,-35.536	1/1:68:0,68:0:0:68:2448:-220.565,-20.47,0	1/1:86:3,83:3:108:83:2971:-257.483,-15.8134,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:92:0,92:0:0:92:3296:-296.818,-27.6948,0	0/1:151:68,83:68:2429:83:2984:-223.28,0,-173.408	1/1:75:4,71:4:144:71:2533:-214.892,-9.26363,0	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	0/1:133:70,63:70:2516:63:2260:-163.61,0,-186.655	1/1:57:0,57:0:0:57:2025:-182.521,-17.1587,0	1/1:10:0,10:0:0:10:337:-30.6529,-3.0103,0	1/1:66:0,66:0:0:66:2376:-214.081,-19.868,0	0/1:62:32,30:32:1148:30:1080:-78.8412,0,-84.966	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:92:0,92:0:0:92:3312:-298.289,-27.6948,0	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.5032	1/1:109:0,109:0:0:109:3901:-351.207,-32.8123,0	1/1:73:0,73:0:0:73:2591:-233.419,-21.9752,0	1/1:62:0,62:0:0:62:2232:-201.135,-18.6639,0	1/1:53:0,53:0:0:53:1894:-170.73,-15.9546,0	1/1:6:0,6:0:0:6:216:-19.7822,-1.80618,0	1/1:57:0,57:0:0:57:2033:-183.241,-17.1587,0	0/1:50:24,26:24:864:26:925:-68.5036,0,-63.0311	1/1:183:0,182:0:0:182:6486:-583.283,-54.7875,0	1/1:78:0,78:0:0:78:2791:-251.38,-23.4803,0	1/1:41:0,41:0:0:41:1476:-133.074,-12.3422,0	1/1:42:0,42:0:0:42:1508:-136.006,-12.6433,0	1/1:64:0,64:0:0:64:2288:-205.548,-19.2659,0	0/1:25:16,9:16:572:9:324:-21.9801,0,-44.2877	1/1:29:0,29:0:0:29:1044:-94.2702,-8.72987,0	1/1:37:0,37:0:0:37:1328:-119.79,-11.1381,0	1/1:12:0,12:0:0:12:428:-38.8584,-3.61236,0	0/1:49:24,25:24:856:25:900:-66.5582,0,-62.6106	0/1:59:48,11:48:1697:11:383:-17.0425,0,-135.253	1/1:68:0,68:0:0:68:2436:-219.483,-20.47,0	1/1:47:0,47:0:0:47:1679:-151.368,-14.1484,0
chr02	19159355	.	A	T	186349	PASS	AB=0.477623;ABP=15.1583;AC=157;AF=0.835106;AN=188;AO=7198;CIGAR=1X;DP=8676;DPB=8676;DPRA=0;EPP=6661.39;EPPR=1588.3;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9894;MQMR=59.9946;NS=94;NUMALT=1;ODDS=3.11451;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257384;QR=52843;RO=1473;RPL=5948;RPP=6661.39;RPPR=1588.3;RPR=1250;RUN=1;SAF=7198;SAP=15633.3;SAR=0;SRF=1473;SRP=3201.59;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	1/1:94:0,94:0:0:94:3361:-302.706,-28.2968,0	1/1:168:0,168:0:0:168:6024:-542.263,-50.573,0	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:28:19,9:19:680:9:315:-20.2584,0,-53.1003	0/1:178:93,85:93:3333:85:3044:-220.606,0,-246.602	1/1:100:0,100:0:0:100:3570:-321.507,-30.103,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:110:0,110:0:0:110:3909:-352.003,-33.1133,0	1/1:152:0,152:0:0:152:5463:-491.795,-45.7566,0	1/1:85:0,85:0:0:85:3031:-273.02,-25.5876,0	1/1:105:0,105:0:0:105:3758:-338.418,-31.6082,0	0/1:145:72,73:72:2588:73:2604:-190.958,0,-189.519	0/1:79:39,40:39:1400:40:1421:-104.404,0,-102.518	0/1:78:34,44:34:1224:44:1576:-118.651,0,-86.9867	1/1:98:0,98:0:0:98:3502:-315.39,-29.5009,0	0/1:71:36,35:36:1292:35:1256:-91.9722,0,-95.2106	1/1:78:0,78:0:0:78:2778:-250.26,-23.4803,0	0/1:113:52,61:52:1868:61:2177:-162.179,0,-134.383	0/1:99:58,41:58:2084:41:1476:-103.334,0,-158.028	1/1:80:1,78:1:36:78:2800:-248.641,-20.5429,0	1/1:51:0,51:0:0:51:1821:-164.17,-15.3525,0	0/1:78:35,43:35:1260:43:1536:-115.053,0,-90.217	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:243:0,243:0:0:243:8663:-779.663,-73.1503,0	1/1:190:1,189:1:36:189:6760:-604.873,-53.5974,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:271:142,129:142:5108:129:4609:-333.394,0,-378.281	1/1:128:1,127:1:21:127:4533:-406.036,-36.4319,0	0/1:116:66,50:66:2372:50:1800:-127.363,0,-178.818	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:324:-29.0734,-2.70927,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:248:0,248:0:0:248:8879:-799.091,-74.6554,0	1/1:162:0,160:0:0:160:5721:-514.647,-48.1648,0	0/1:124:78,46:78:2789:46:1652:-111.641,0,-213.921	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	1/1:86:0,86:0:0:86:3083:-277.697,-25.8886,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	0/1:96:50,46:50:1792:46:1640:-118.989,0,-132.664	0/1:99:50,49:50:1800:49:1730:-126.178,0,-132.48	0/1:59:31,28:31:1116:28:999:-72.4637,0,-82.9909	1/1:73:0,73:0:0:73:2600:-234.246,-21.9752,0	0/1:87:47,40:47:1669:40:1423:-102.177,0,-124.306	1/1:159:1,158:1:36:158:5655:-505.415,-44.2655,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	1/1:132:0,132:0:0:132:4715:-424.51,-39.736,0	1/1:142:0,142:0:0:142:5085:-457.793,-42.7463,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:100:0,100:0:0:100:3584:-322.767,-30.103,0	1/1:54:0,54:0:0:54:1929:-173.885,-16.2556,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:74:37,37:37:1332:37:1328:-97.546,0,-97.9062	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:179:2,177:2:68:177:6337:-563.962,-47.4267,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:174:0,174:0:0:174:6239:-561.603,-52.3792,0	0/1:172:75,97:75:2692:97:3475:-261.184,0,-190.747	1/1:52:1,51:1:36:51:1820:-160.483,-12.0553,0	1/1:71:0,71:0:0:71:2546:-229.377,-21.3731,0	0/1:167:92,75:92:3293:75:2700:-192.971,0,-246.315	1/1:63:2,61:2:72:61:2192:-190.709,-12.1282,0	1/1:71:0,71:0:0:71:2532:-228.13,-21.3731,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:102:51,51:51:1817:51:1824:-133.736,0,-133.104	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0	0/1:67:27,40:27:972:40:1419:-107.838,0,-67.6289	1/1:181:0,181:0:0:181:6453:-580.856,-54.4864,0	1/1:164:0,164:0:0:164:5855:-527.061,-49.3689,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:117:2,115:2:72:115:4128:-364.866,-28.3838,0	0/1:76:42,34:42:1512:34:1224:-87.5888,0,-113.496	1/1:216:0,216:0:0:216:7695:-692.583,-65.0225,0	1/1:110:1,109:1:36:109:3905:-348.043,-29.515,0	1/1:97:0,97:0:0:97:3435:-309.363,-29.1999,0	1/1:105:0,105:0:0:105:3755:-338.15,-31.6082,0	1/1:164:0,162:0:0:162:5806:-522.291,-48.7669,0	0/1:47:28,19:28:989:19:684:-47.7419,0,-75.1736	1/1:78:0,78:0:0:78:2786:-250.98,-23.4803,0	1/1:104:1,103:1:36:103:3653:-325.373,-27.7088,0	1/1:115:1,114:1:36:114:4061:-362.077,-31.0202,0	0/1:200:100,100:100:3596:100:3588:-262.92,0,-263.639	0/1:99:69,30:69:2484:30:1080:-67.7113,0,-194.011	1/1:85:0,85:0:0:85:3040:-273.828,-25.5876,0	1/1:110:0,110:0:0:110:3899:-351.102,-33.1133,0
chr02	19460710	.	G	A	18228.1	PASS	AB=0.499311;ABP=3.01928;AC=32;AF=0.170213;AN=188;AO=1096;CIGAR=1X;DP=6877;DPB=6877;DPRA=1.02412;EPP=2382.94;EPPR=12543.3;GTI=1;LEN=1;MEANALT=1.11429;MQM=60;MQMR=59.9984;NS=94;NUMALT=1;ODDS=3.73996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39176;QR=206799;RO=5775;RPL=1096;RPP=2382.94;RPPR=12543.3;RPR=0;RUN=1;SAF=0;SAP=2382.94;SAR=1096;SRF=0;SRP=12543.3;SRR=5775;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/1:50:36,14:36:1292:14:504:-30.6466,0,-101.532	0/1:37:22,15:22:792:15:540:-37.7984,0,-60.4676	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.013	0/0:124:124,0:124:4419:0:0:0,-37.3277,-397.883	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.462	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/1:69:30,39:30:1080:39:1387:-104.358,0,-76.7422	0/1:43:24,19:24:864:19:684:-48.946,0,-65.1383	0/1:45:20,25:20:720:25:900:-67.7747,0,-51.5824	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2127	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:149:67,82:67:2400:82:2929:-218.99,0,-171.403	0/1:130:73,57:73:2616:57:2040:-144.738,0,-196.554	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.817	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/1:119:67,52:67:2399:52:1864:-132.217,0,-180.344	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:216:216,0:216:7736:0:0:0,-65.0225,-696.261	0/0:180:179,1:179:6420:1:36:0,-50.5871,-574.288	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:199:91,108:91:3260:108:3880:-289.488,0,-233.716	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:86:42,44:42:1508:44:1568:-115.523,0,-110.126	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:3:1,2:1:32:2:70:-5.74424,0,-2.29622	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:212:212,0:212:7590:0:0:0,-63.8184,-683.137	0/0:129:129,0:129:4584:0:0:0,-38.8329,-412.726	0/1:72:37,35:37:1328:35:1260:-92.0313,0,-98.1481	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:117:57,60:57:2025:60:2129:-156.656,0,-147.3	0/1:77:40,36:40:1431:36:1292:-93.3457,0,-105.849	0/1:66:39,27:39:1387:27:968:-67.5694,0,-105.26	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:90:50,39:50:1792:39:1400:-99.1477,0,-134.411	0/0:116:116,0:116:4163:0:0:0,-34.9195,-374.851	0/0:111:110,0:110:3944:0:0:0,-33.1133,-354.792	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:126:126,0:126:4492:0:0:0,-37.9298,-404.451	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/0:105:105,0:105:3763:0:0:0,-31.6081,-338.868	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:85:36,49:36:1284:49:1752:-132.377,0,-90.2759	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:19:9,10:9:324:10:345:-25.6613,0,-23.7863	0/0:54:54,0:54:1935:0:0:0,-16.2556,-174.426	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.611	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:103:103,0:103:3683:0:0:0,-31.0061,-331.673	0/1:182:81,100:81:2896:100:3569:-266.719,0,-206.178	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:115:65,50:65:2332:50:1762:-124.241,0,-175.521	0/0:89:89,0:89:3156:0:0:0,-26.7917,-284.265	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:98:98,0:98:3507:0:0:0,-29.5009,-315.84	0/1:63:23,40:23:820:40:1436:-110.573,0,-55.1576	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:59:34,25:34:1220:25:900:-63.5602,0,-92.346	0/0:115:114,0:114:4088:0:0:0,-34.3174,-367.745	0/0:118:116,1:116:4160:1:32:0,-32.3611,-371.363	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:63:61,2:61:2188:2:72:0,-12.1282,-190.349	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:58:56,2:56:1996:2:72:0,-10.623,-173.077	0/1:72:37,35:37:1324:35:1260:-92.0313,0,-97.7879	0/0:148:148,0:148:5292:0:0:0,-44.5524,-476.416	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:156:156,0:156:5596:0:0:0,-46.9607,-503.761	0/1:50:27,23:27:972:23:828:-59.7926,0,-72.7464	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/1:70:36,34:36:1288:34:1211:-88.2234,0,-95.1515	0/1:52:14,38:14:504:38:1334:-104.702,0,-30.0445	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168
chr02	19463313	.	GAAA	AAAA,AAAG	235787	PASS	AB=0.468552,0.527354;ABP=26.0916,20.4734;AC=156,32;AF=0.829787,0.170213;AN=188;AO=7317,1430;CIGAR=1X3M,1X2M1X;DP=8777;DPB=8781.75;DPRA=47.1774,1.02236;EPP=15891.7,3108.22;EPPR=7.35324;GTI=2;LEN=1,4;MEANALT=1.68817,2.31579;MQM=59.9181,59.3552;MQMR=60;NS=94;NUMALT=2;ODDS=0.223981;PAIRED=0,0;PAIREDR=0;PAO=7,7.5;PQA=198,234;PQR=0;PRO=0.5;QA=251367,50343;QR=72;RO=2;RPL=3344,575;RPP=120.425,122.062;RPPR=3.0103;RPR=3973,855;RUN=1,1;SAF=3344,575;SAP=120.425,122.062;SAR=3973,855;SRF=1;SRP=3.0103;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33,0:0:0:33,0:1148,0:-103.626,-9.93399,0,-103.626,-9.93399,-103.626	1/1:127:0,125,1:0:0:125,1:4347,36:-391.116,-37.6288,0,-388.178,-34.6262,-387.877	1/1:103:0,103,0:0:0:103,0:3523,0:-317.281,-31.0061,0,-317.281,-31.0061,-317.281	1/1:127:0,127,0:0:0:127,0:4338,0:-390.381,-38.2308,0,-390.381,-38.2308,-390.381	1/2:15:0,7,8:0:0:7,8:235,278:-41.9777,-22.9481,-20.8409,-19.3707,0,-16.9625	1/2:36:0,15,21:0:0:15,21:519,751:-103.765,-61.5946,-57.0792,-42.5213,0,-36.1996	1/1:71:0,71,0:0:0:71,0:2423,0:-218.323,-21.3731,0,-218.323,-21.3731,-218.323	1/1:144:0,144,0:0:0:144,0:4976,0:-448.001,-43.3483,0,-448.001,-43.3483,-448.001	1/1:95:0,95,0:0:0:95,0:3345,0:-301.27,-28.5979,0,-301.27,-28.5979,-301.27	1/1:78:0,78,0:0:0:78,0:2637,0:-237.349,-23.4803,0,-237.349,-23.4803,-237.349	1/1:101:0,100,0:0:0:100,0:3438,0:-309.388,-30.103,0,-309.388,-30.103,-309.388	1/1:166:0,166,0:0:0:166,0:5622,0:-506.108,-49.971,0,-506.108,-49.971,-506.108	1/1:137:0,135,1:0:0:135,1:4676,36:-420.571,-40.6391,0,-417.634,-37.6817,-417.333	1/2:105:0,54,49:0:0:54,49:1857,1700:-288.545,-137.798,-121.543,-150.734,0,-135.983	1/2:125:0,56,69:0:0:56,69:1886,2445:-352.024,-199.21,-182.352,-153.158,0,-132.387	1/2:113:0,53,60:0:0:53,60:1842,2124:-323.1,-173.346,-157.391,-150.104,0,-132.043	1/1:73:0,73,0:0:0:73,0:2470,0:-222.55,-21.9752,0,-222.55,-21.9752,-222.55	1/2:112:0,54,58:0:0:54,58:1796,2057:-313.239,-167.923,-151.667,-145.659,0,-128.199	1/1:55:0,55,0:0:0:55,0:1847,0:-166.496,-16.5567,0,-166.496,-16.5567,-166.496	1/2:122:0,59,63:0:0:59,63:1984,2204:-339.995,-179.27,-161.509,-160.709,0,-141.744	1/2:185:0,79,105:0:0:79,105:2756,3708:-526.132,-301.979,-278.198,-224.232,0,-192.624	1/1:35:0,35,0:0:0:35,0:1189,0:-107.307,-10.5361,0,-107.307,-10.5361,-107.307	1/1:66:0,66,0:0:0:66,0:2330,0:-209.959,-19.868,0,-209.959,-19.868,-209.959	1/2:106:0,50,53:0:0:50,53:1683,1860:-287.835,-151.477,-136.426,-136.476,0,-120.522	1/1:66:0,65,0:0:0:65,0:2262,0:-203.609,-19.567,0,-203.609,-19.567,-203.609	1/1:181:0,181,0:0:0:181,0:6218,0:-559.73,-54.4864,0,-559.73,-54.4864,-559.73	1/1:180:0,178,1:0:0:178,1:6098,36:-548.653,-53.5833,0,-545.716,-50.571,-545.415	1/1:58:0,58,0:0:0:58,0:1990,0:-179.238,-17.4597,0,-179.238,-17.4597,-179.238	1/2:150:0,79,71:0:0:79,71:2690,2512:-423.114,-204.898,-181.117,-218.563,0,-197.189	1/1:80:0,80,0:0:0:80,0:2836,0:-255.48,-24.0824,0,-255.48,-24.0824,-255.48	1/2:59:0,28,31:0:0:28,31:980,1092:-168.959,-89.2429,-80.8141,-80.0665,0,-70.7345	1/1:5:0,5,0:0:0:5,0:172,0:-15.818,-1.50515,0,-15.818,-1.50515,-15.818	1/1:8:0,8,0:0:0:8,0:280,0:-25.5393,-2.40824,0,-25.5393,-2.40824,-25.5393	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:4:0,1,3:0:0:1,3:28,108:-11.3691,-9.17208,-8.87105,-2.4968,0,-1.59371	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:333:0,330,0:0:0:330,0:11353,0:-1021.35,-99.3399,0,-1021.35,-99.3399,-1021.35	1/1:78:0,78,0:0:0:78,0:2684,0:-241.806,-23.4803,0,-241.806,-23.4803,-241.806	1/2:94:0,44,50:0:0:44,50:1530,1763:-268.261,-143.866,-130.621,-124.745,0,-109.694	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:113:0,113,0:0:0:113,0:3925,0:-353.45,-34.0164,0,-353.45,-34.0164,-353.45	1/1:57:0,57,0:0:0:57,0:1959,0:-176.58,-17.1587,0,-176.58,-17.1587,-176.58	1/2:99:0,53,46:0:0:53,46:1843,1619:-281.955,-132.113,-116.158,-150.192,0,-136.345	1/2:139:0,72,67:0:0:72,67:2494,2361:-395.23,-192.54,-170.866,-203.039,0,-182.87	1/2:118:0,47,71:0:0:47,71:1626,2497:-335.719,-203.589,-189.44,-132.478,0,-111.105	1/1:79:0,79,0:0:0:79,0:2727,0:-245.676,-23.7814,0,-245.676,-23.7814,-245.676	1/2:76:0,35,41:0:0:35,41:1201,1426:-213.611,-116.102,-105.565,-97.8542,0,-85.5119	1/1:143:0,141,0:0:0:141,0:4844,0:-435.823,-42.4452,0,-435.823,-42.4452,-435.823	1/1:83:0,83,0:0:0:83,0:2814,0:-253.498,-24.9855,0,-253.498,-24.9855,-253.498	1/1:102:0,101,0:0:0:101,0:3446,0:-310.158,-30.404,0,-310.158,-30.404,-310.158	1/1:87:0,87,0:0:0:87,0:2987,0:-269.006,-26.1896,0,-269.006,-26.1896,-269.006	1/2:6:0,5,1:0:0:5,1:180,30:-17.4309,-2.69354,-1.18839,-15.0469,0,-14.7459	1/1:120:0,120,0:0:0:120,0:4179,0:-376.297,-36.1236,0,-376.297,-36.1236,-376.297	1/1:20:0,20,0:0:0:20,0:711,0:-64.2594,-6.0206,0,-64.2594,-6.0206,-64.2594	1/2:6:0,3,3:0:0:3,3:104,107:-17.5269,-9.07866,-8.17557,-8.79971,0,-7.89662	1/2:108:0,52,56:0:0:52,56:1772,1971:-304.49,-160.744,-145.091,-144.092,0,-127.234	1/1:46:0,46,0:0:0:46,0:1595,0:-143.839,-13.8474,0,-143.839,-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chr02	19637682	.	C	T	18752.8	PASS	AB=0.370286;ABP=518.466;AC=30;AF=0.159574;AN=188;AO=1312;CIGAR=1X;DP=13715;DPB=13715;DPRA=0.812349;EPP=2851.98;EPPR=26892.4;GTI=5;LEN=1;MEANALT=1.02857;MQM=59.654;MQMR=52.1708;NS=94;NUMALT=1;ODDS=7.94219;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46689;QR=438682;RO=12399;RPL=3;RPP=2825.98;RPPR=1534.35;RPR=1309;RUN=1;SAF=3;SAP=2825.98;SAR=1309;SRF=4725;SRP=1526.07;SRR=7674;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:81:81,0:81:2831:0:0:0,-24.3834,-247.941	0/0:210:210,0:210:7385:0:0:0,-63.2163,-654.261	0/0:194:194,0:194:6884:0:0:0,-58.3998,-602.271	0/0:329:329,0:329:11619:0:0:0,-99.0389,-1028.8	0/1:93:69,24:69:2423:24:856:-49.3653,0,-185.791	0/1:78:48,30:48:1716:30:1076:-73.6643,0,-127.004	0/0:166:166,0:166:5883:0:0:0,-49.971,-522.787	0/0:293:293,0:293:10380:0:0:0,-88.2018,-908.976	0/0:183:183,0:183:6457:0:0:0,-55.0885,-563.475	0/0:173:173,0:173:6166:0:0:0,-52.0782,-550.897	0/0:125:125,0:125:4398:0:0:0,-37.6287,-390.149	0/0:178:178,0:178:6256:0:0:0,-53.5833,-546.43	0/0:165:165,0:165:5803:0:0:0,-49.6699,-505.194	0/1:107:63,44:63:2206:44:1551:-107.645,0,-162.974	0/1:120:68,52:68:2388:52:1850:-130.649,0,-175.961	0/1:73:48,25:48:1658:25:888:-58.1909,0,-123.2	0/0:146:146,0:146:5136:0:0:0,-43.9504,-456.458	0/1:103:67,36:67:2368:36:1288:-85.2132,0,-179.717	0/0:85:85,0:85:3026:0:0:0,-25.5875,-266.374	0/1:187:132,55:132:4711:55:1968:-121,0,-359.346	0/1:205:111,94:111:3914:94:3372:-241.87,0,-286.746	0/0:145:145,0:145:5147:0:0:0,-43.6493,-458.249	0/0:119:119,0:119:4223:0:0:0,-35.8226,-376.144	0/1:178:101,77:101:3585:77:2732:-191.832,0,-266.148	0/0:163:162,1:162:5727:1:36:0,-45.4696,-502.708	0/0:391:391,0:391:13896:0:0:0,-117.703,-1235.61	0/0:182:181,0:181:6415:0:0:0,-54.4864,-573.302	0/0:96:96,0:96:3351:0:0:0,-28.8989,-294.92	0/1:338:220,118:220:7862:118:4178:-274.312,0,-598.781	0/0:154:154,0:154:5467:0:0:0,-46.3586,-484.408	0/1:92:68,24:68:2436:24:844:-48.4779,0,-189.858	0/0:21:21,0:21:724:0:0:0,-6.32163,-64.7141	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.2612	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.1077	0/0:10:10,0:10:345:0:0:0,-3.0103,-29.8568	0/0:359:359,0:359:12696:0:0:0,-108.07,-1130.98	0/0:164:164,0:164:5854:0:0:0,-49.3689,-523.627	0/1:124:78,45:78:2762:45:1600:-106.897,0,-202.518	0/1:4:3,1:3:93:1:36:-2.39415,0,-7.19923	0/0:213:212,0:212:7482:0:0:0,-63.8184,-658.762	0/0:53:53,0:53:1883:0:0:0,-15.9546,-166.174	0/0:188:188,0:188:6687:0:0:0,-56.5936,-593.427	0/0:146:146,0:146:5147:0:0:0,-43.9504,-458.5	0/1:112:66,46:66:2290:46:1615:-111.911,0,-168.983	0/0:155:155,0:155:5511:0:0:0,-46.6596,-487.138	0/1:161:87,74:87:3061:74:2625:-188.027,0,-218.789	0/0:211:211,0:211:7496:0:0:0,-63.5173,-661.514	0/0:160:160,0:160:5687:0:0:0,-48.1648,-505.504	0/0:279:279,0:279:9944:0:0:0,-83.9874,-885.632	0/0:207:207,0:207:7339:0:0:0,-62.3132,-653.123	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/0:164:164,0:164:5865:0:0:0,-49.3689,-511.587	0/0:67:67,0:67:2379:0:0:0,-20.169,-209.509	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:170:104,66:104:3677:66:2347:-160.307,0,-273.356	0/0:39:39,0:39:1342:0:0:0,-11.7402,-118.784	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.4709	0/1:25:10,15:10:343:15:540:-41.3931,0,-23.5874	0/0:210:210,0:210:7467:0:0:0,-63.2163,-652.377	0/0:162:162,0:162:5698:0:0:0,-48.7669,-505.214	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.7517	0/0:212:211,1:211:7463:1:36:0,-60.2205,-659.554	0/1:233:144,89:144:5091:89:3173:-215.477,0,-384.709	0/1:137:124,13:124:4399:13:464:-0.856401,0,-349.268	0/0:111:111,0:111:3963:0:0:0,-33.4143,-351.954	0/1:267:169,98:169:5984:98:3485:-233.474,0,-453.721	0/0:186:185,1:185:6573:1:36:0,-52.3933,-576.749	0/0:93:93,0:93:3277:0:0:0,-27.9958,-290.109	0/0:148:147,0:147:5218:0:0:0,-44.2514,-464.261	0/1:145:95,50:95:3366:50:1784:-117.188,0,-255.354	0/0:25:25,0:25:900:0:0:0,-7.52575,-80.3694	0/0:79:79,0:79:2798:0:0:0,-23.7814,-243.239	0/1:98:64,34:64:2284:34:1204:-79.1181,0,-169.868	0/0:224:224,0:224:7887:0:0:0,-67.4307,-693.963	0/0:243:243,0:243:8556:0:0:0,-73.1503,-760.988	0/0:129:129,0:129:4560:0:0:0,-38.8329,-399.454	0/0:211:210,1:210:7398:1:36:0,-59.9191,-644.275	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8359	0/0:161:159,2:159:5666:2:72:0,-41.6291,-498.45	0/1:153:91,62:91:3213:62:2212:-153.287,0,-234.556	0/0:282:282,0:282:10008:0:0:0,-84.8905,-890.723	0/0:152:152,0:152:5328:0:0:0,-45.7566,-475.012	0/0:166:166,0:166:5875:0:0:0,-49.971,-522.514	0/0:210:210,0:210:7434:0:0:0,-63.2163,-662.132	0/0:289:289,0:289:10187:0:0:0,-86.9977,-905.327	0/1:61:36,25:36:1287:25:892:-62.2278,0,-95.1039	0/0:140:140,0:140:4929:0:0:0,-42.1442,-429.329	0/0:162:162,0:162:5740:0:0:0,-48.7669,-501.851	0/0:91:91,0:91:3203:0:0:0,-27.3937,-282.963	0/1:115:89,26:89:3119:26:933:-49.6689,0,-240.073	0/1:112:44,68:44:1547:68:2424:-184.694,0,-104.687	0/0:162:162,0:162:5655:0:0:0,-48.7669,-499.311	0/0:246:246,0:246:8686:0:0:0,-74.0534,-768.559
chr02	19637728	.	T	C	174772	PASS	AB=0.517952;ABP=10.8849;AC=157;AF=0.835106;AN=188;AO=7962;CIGAR=1X;DP=9327;DPB=9327;DPRA=50.1344;EPP=17292.3;EPPR=2962.73;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.6461;MQMR=59.6324;NS=94;NUMALT=1;ODDS=0.743204;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284110;QR=48599;RO=1363;RPL=7962;RPP=17292.3;RPPR=2962.73;RPR=0;RUN=1;SAF=0;SAP=17292.3;SAR=7962;SRF=0;SRP=2962.73;SRR=1363;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51:0:0:51:1802:-162.19,-15.3525,0	1/1:165:0,164:0:0:164:5833:-524.618,-49.3689,0	1/1:119:0,119:0:0:119:4244:-382.107,-35.8226,0	1/1:167:0,167:0:0:167:5958:-536.256,-50.272,0	0/1:64:25,39:25:888:39:1396:-106.668,0,-59.6041	0/1:58:31,27:31:1097:27:960:-69.2532,0,-81.5701	1/1:106:0,106:0:0:106:3793:-341.532,-31.9092,0	1/1:179:0,179:0:0:179:6424:-578.184,-53.8844,0	1/1:118:0,118:0:0:118:4179:-375.314,-35.5215,0	1/1:134:0,134:0:0:134:4736:-426.354,-40.338,0	1/1:67:0,67:0:0:67:2396:-215.839,-20.169,0	1/1:89:0,89:0:0:89:3169:-285.434,-26.7917,0	1/1:87:0,87:0:0:87:3105:-279.637,-26.1896,0	0/1:91:51,40:51:1809:40:1434:-101.959,0,-135.67	0/1:93:54,39:54:1920:39:1385:-96.9429,0,-145.057	0/1:48:24,24:24:849:24:860:-63.2611,0,-62.2753	1/1:125:0,125:0:0:125:4492:-404.26,-37.6288,0	0/1:90:36,54:36:1296:54:1944:-148.124,0,-89.847	1/1:59:0,59:0:0:59:2116:-190.701,-17.7608,0	0/1:130:56,74:56:2004:74:2660:-200.499,0,-141.484	0/1:188:101,87:101:3593:87:3078:-220.076,0,-266.551	1/1:102:0,102:0:0:102:3626:-326.541,-30.7051,0	1/1:76:0,76:0:0:76:2732:-245.973,-22.8783,0	0/1:156:80,76:80:2864:76:2686:-195.016,0,-209.642	1/1:113:1,112:1:36:112:3997:-356.301,-30.4181,0	1/1:274:0,274:0:0:274:9745:-876.944,-82.4822,0	1/1:164:0,164:0:0:164:5866:-527.344,-49.3689,0	1/1:58:0,58:0:0:58:2058:-185.473,-17.4597,0	0/1:271:122,149:122:4353:149:5303:-395.822,0,-310.181	1/1:100:0,100:0:0:100:3580:-322.385,-30.103,0	0/1:78:28,50:28:981:50:1792:-138.043,0,-65.0145	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:25:0,25:0:0:25:885:-79.9583,-7.52575,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:237:0,237:0:0:237:8493:-764.358,-71.3441,0	1/1:135:0,135:0:0:135:4795:-431.676,-40.6391,0	0/1:94:46,48:46:1640:48:1720:-126.75,0,-119.583	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:117:0,117:0:0:117:4192:-377.425,-35.2205,0	1/1:33:0,33:0:0:33:1188:-107.227,-9.93399,0	1/1:143:0,143:0:0:143:5106:-459.642,-43.0473,0	1/1:110:0,110:0:0:110:3932:-353.937,-33.1133,0	0/1:90:48,42:48:1724:42:1504:-108.562,0,-128.343	1/1:65:0,65:0:0:65:2306:-207.797,-19.567,0	0/1:118:71,47:71:2548:47:1684:-116.317,0,-194.037	1/1:99:0,99:0:0:99:3537:-318.523,-29.802,0	1/1:109:0,109:0:0:109:3893:-349.593,-32.8123,0	1/1:182:0,182:0:0:182:6510:-585.941,-54.7875,0	1/1:138:1,137:1:36:137:4889:-436.56,-37.9439,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:93:0,93:0:0:93:3340:-300.796,-27.9958,0	1/1:16:0,16:0:0:16:576:-52.1746,-4.81648,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:130:67,63:67:2392:63:2249:-163.519,0,-176.4	1/1:20:0,20:0:0:20:701:-63.4041,-6.0206,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:24:15,9:15:540:9:324:-22.2807,0,-41.7118	1/1:112:0,112:0:0:112:3993:-359.553,-33.7154,0	1/1:93:0,93:0:0:93:3340:-300.81,-27.9958,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:138:0,138:0:0:138:4897:-440.818,-41.5421,0	0/1:198:95,103:95:3381:103:3659:-269.529,0,-244.893	0/1:104:14,90:14:504:90:3190:-255.798,0,-14.391	1/1:76:0,76:0:0:76:2724:-245.392,-22.8783,0	0/1:228:98,130:98:3492:130:4656:-350.553,0,-245.845	1/1:74:1,73:1:36:73:2628:-233.165,-18.6779,0	1/1:50:0,50:0:0:50:1800:-162.278,-15.0515,0	1/1:124:0,124:0:0:124:4437:-399.36,-37.3277,0	0/1:115:52,63:52:1864:63:2264:-169.388,0,-133.415	1/1:17:0,17:0:0:17:608:-55.0516,-5.11751,0	1/1:35:0,35:0:0:35:1256:-113.341,-10.5361,0	0/1:71:36,34:36:1281:34:1199:-86.7652,0,-94.0524	1/1:136:0,136:0:0:136:4831:-434.104,-40.9401,0	1/1:154:0,154:0:0:154:5464:-491.867,-46.3586,0	1/1:82:0,82:0:0:82:2921:-263.116,-24.6845,0	1/1:130:1,129:1:36:129:4594:-409.997,-35.5356,0	1/1:24:0,24:0:0:24:853:-77.0888,-7.22472,0	1/1:129:2,127:2:72:127:4530:-401.013,-31.9961,0	0/1:122:67,55:67:2404:55:1942:-138.319,0,-179.887	1/1:190:0,190:0:0:190:6790:-611.03,-57.1957,0	1/1:122:0,122:0:0:122:4310:-387.56,-36.7257,0	1/1:100:0,100:0:0:100:3596:-323.835,-30.103,0	1/1:159:0,159:0:0:159:5682:-511.145,-47.8638,0	1/1:178:0,178:0:0:178:6350:-571.516,-53.5833,0	0/1:50:27,23:27:957:23:820:-59.0658,0,-71.277	1/1:86:0,86:0:0:86:3073:-276.425,-25.8886,0	1/1:103:0,103:0:0:103:3693:-332.527,-31.0061,0	1/1:51:0,51:0:0:51:1802:-162.412,-15.3525,0	0/1:70:26,44:26:928:44:1572:-120.685,0,-62.7651	0/1:99:70,29:70:2462:29:1044:-64.4697,0,-192.027	1/1:74:0,74:0:0:74:2629:-236.227,-22.2762,0	1/1:149:0,149:0:0:149:5318:-478.747,-44.8535,0
chr02	19768448	.	C	T	78531	PASS	AB=0.461187;ABP=20.2036;AC=153;AF=0.81383;AN=188;AO=3630;CIGAR=1X;DP=5060;DPB=5060;DPRA=0.934783;EPP=7885.46;EPPR=3103.87;GTI=12;LEN=1;MEANALT=1.02174;MQM=59.9956;MQMR=60;NS=94;NUMALT=1;ODDS=0.103005;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129409;QR=50578;RO=1428;RPL=3630;RPP=7885.46;RPPR=3103.87;RPR=0;RUN=1;SAF=3630;SAP=7885.46;SAR=0;SRF=1428;SRP=3103.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1282:-115.683,-10.8371,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:47:1,46:1:36:46:1631:-143.48,-10.5501,0	1/1:89:0,89:0:0:89:3163:-284.893,-26.7917,0	0/1:34:20,14:20:716:14:500:-35.1012,0,-54.5327	0/1:25:14,11:14:504:11:383:-27.2775,0,-38.1723	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:31:0,31:0:0:31:1101:-99.3984,-9.33193,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:55:0,55:0:0:55:1956:-176.316,-16.5567,0	1/1:45:1,44:1:36:44:1549:-136.101,-9.94808,0	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:32:12,20:12:424:20:720:-55.4958,0,-28.8635	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:12:7,5:7:239:5:180:-12.9397,0,-18.2304	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:110:62,48:62:2184:48:1716:-121.612,0,-163.708	0/1:131:65,66:65:2297:66:2348:-172.144,0,-167.555	1/1:63:1,62:1:36:62:2188:-193.586,-15.3666,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:102:2,100:2:72:100:3548:-312.692,-23.8683,0	1/1:93:0,93:0:0:93:3284:-295.781,-27.9958,0	1/1:15:0,15:0:0:15:523:-47.3985,-4.51545,0	0/1:139:66,73:66:2294:73:2624:-194.564,0,-164.874	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:59:30,29:30:1052:29:1040:-76.1536,0,-77.227	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:166:165,1:165:5856:1:36:0,-46.3727,-523.557	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:133:1,132:1:36:132:4696:-419.202,-36.4387,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	0/1:49:43,6:43:1514:6:216:-5.04004,0,-121.801	0/0:58:58,0:58:2023:0:0:0,-17.4597,-182.338	1/1:67:0,67:0:0:67:2387:-215.087,-20.169,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:39:0,39:0:0:39:1395:-125.848,-11.7402,0	0/1:21:5,16:5:180:16:572:-45.4918,0,-10.2304	1/1:47:0,47:0:0:47:1671:-150.677,-14.1484,0	0/1:74:41,33:41:1455:33:1180:-84.2318,0,-108.969	1/1:110:0,110:0:0:110:3924:-353.351,-33.1133,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:46:1,45:1:21:45:1603:-142.459,-11.7474,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/0:162:158,3:158:5624:3:108:0,-38.7206,-496.217	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/0:57:57,0:57:2017:0:0:0,-17.1587,-181.801	0/1:64:34,30:34:1198:30:1080:-78.2473,0,-88.8581	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	0/0:158:155,3:155:5535:3:104:0,-37.8599,-488.573	0/0:127:118,8:118:4211:8:288:0,-12.0222,-352.904	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:195:0,195:0:0:195:6963:-626.734,-58.7009,0	0/1:117:46,71:46:1641:71:2536:-193.271,0,-112.756	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:87:0,87:0:0:87:3097:-278.957,-26.1896,0	0/1:98:51,47:51:1806:47:1688:-122.706,0,-133.319	1/1:64:0,64:0:0:64:2259:-203.57,-19.2659,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:26:7,19:7:252:19:684:-54.0635,0,-15.2022	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	0/1:25:11,14:11:396:14:491:-36.9954,0,-28.457	1/1:45:0,45:0:0:45:1603:-144.559,-13.5464,0	1/1:115:0,115:0:0:115:4115:-370.534,-34.6185,0	1/1:50:0,50:0:0:50:1769:-159.491,-15.0515,0	1/1:57:0,57:0:0:57:2008:-180.991,-17.1587,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	0/1:51:27,24:27:927:24:851:-61.5569,0,-68.3858	1/1:107:0,107:0:0:107:3832:-345.077,-32.2102,0	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	1/1:41:2,39:2:72:39:1391:-118.652,-5.50551,0	1/1:34:0,34:0:0:34:1199:-108.214,-10.235,0	1/1:85:0,85:0:0:85:3018:-271.795,-25.5876,0	0/1:16:3,13:3:104:13:436:-34.7436,0,-4.88633	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:119:103,16:103:3640:16:561:-14.9946,0,-291.984	0/1:54:31,23:31:1104:23:824:-58.2277,0,-83.415	1/1:70:0,70:0:0:70:2500:-225.252,-21.0721,0	1/1:63:0,63:0:0:63:2236:-201.502,-18.9649,0
chr02	19829877	.	T	C	17382.3	PASS	AB=0.490901;ABP=4.55151;AC=30;AF=0.159574;AN=188;AO=1063;CIGAR=1X;DP=8822;DPB=8822;DPRA=0.869232;EPP=2311.29;EPPR=16849.3;GTI=2;LEN=1;MEANALT=1.02632;MQM=59.7281;MQMR=59.9814;NS=94;NUMALT=1;ODDS=2.31579;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37994;QR=274261;RO=7758;RPL=0;RPP=2311.29;RPPR=16831.9;RPR=1063;RUN=1;SAF=0;SAP=2311.29;SAR=1063;SRF=2;SRP=16831.9;SRR=7756;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1891:0:0:0,-16.2556,-170.463	0/0:57:57,0:57:2014:0:0:0,-17.1587,-181.53	0/0:132:132,0:132:4656:0:0:0,-39.736,-419.184	0/0:277:276,1:276:9723:1:36:0,-79.787,-871.423	0/1:51:26,25:26:932:25:900:-65.9623,0,-68.8463	0/1:34:18,16:18:599:16:572:-41.3875,0,-43.9851	0/0:128:128,0:128:4509:0:0:0,-38.5318,-405.976	0/0:156:156,0:156:5545:0:0:0,-46.9607,-498.75	0/0:64:64,0:64:2253:0:0:0,-19.2659,-202.842	0/0:68:68,0:68:2387:0:0:0,-20.47,-215.084	0/0:48:47,1:47:1676:1:36:0,-10.8512,-147.529	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:61:61,0:61:2125:0:0:0,-18.3628,-191.515	0/1:78:42,36:42:1447:36:1287:-92.6423,0,-107.038	0/1:66:28,38:28:1000:38:1355:-102.376,0,-70.4474	0/1:50:25,25:25:869:25:892:-65.5482,0,-63.4724	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/1:38:15,23:15:498:23:824:-63.0442,0,-33.6953	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:185:108,77:108:3827:77:2738:-190.879,0,-288.934	0/1:164:72,92:72:2527:92:3296:-247.485,0,-178.309	0/0:145:145,0:145:5132:0:0:0,-43.6493,-462.021	0/0:156:155,1:155:5503:1:36:0,-43.3624,-491.796	0/1:15:6,9:6:201:9:324:-24.9858,0,-13.9016	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.327	0/0:259:259,0:259:9060:0:0:0,-77.9668,-815.326	0/0:207:207,0:207:7295:0:0:0,-62.3132,-656.595	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:251:138,113:138:4869:113:4050:-289.121,0,-362.803	0/0:122:122,0:122:4244:0:0:0,-36.7257,-382.137	0/1:121:70,51:70:2418:51:1814:-126.984,0,-181.444	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:182:182,0:182:6405:0:0:0,-54.7875,-576.541	0/0:79:79,0:79:2802:0:0:0,-23.7814,-252.418	0/1:46:20,26:20:701:26:928:-69.9745,0,-49.5643	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:162:162,0:162:5789:0:0:0,-48.7669,-521.124	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:221:221,0:221:7725:0:0:0,-66.5276,-695.284	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/1:45:22,23:22:788:23:801:-58.8594,0,-57.6984	0/0:124:124,0:124:4371:0:0:0,-37.3277,-393.562	0/1:97:58,39:58:2057:39:1396:-96.7229,0,-156.2	0/0:169:169,0:169:5966:0:0:0,-50.8741,-537.046	0/0:80:80,0:80:2830:0:0:0,-24.0824,-254.937	0/0:100:99,1:99:3518:1:36:0,-26.5047,-313.23	0/0:193:193,0:193:6868:0:0:0,-58.0988,-618.187	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:159:159,0:159:5655:0:0:0,-47.8638,-509.069	0/0:120:120,0:120:4210:0:0:0,-36.1236,-379.078	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:113:49,64:49:1722:64:2277:-171.165,0,-121.245	0/0:42:42,0:42:1467:0:0:0,-12.6433,-132.318	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7392	0/0:83:83,0:83:2920:0:0:0,-24.9855,-263.031	0/0:96:95,1:95:3362:1:36:0,-25.3006,-299.198	0/0:1:1,0:1:21:0:0:0,-0.30103,-2.09995	0/0:205:205,0:205:7257:0:0:0,-61.7111,-653.167	0/1:172:90,82:90:3172:82:2935:-212.602,0,-233.92	0/0:30:29,1:29:1014:1:36:0,-5.43262,-87.9692	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.461	0/1:153:90,62:90:3194:62:2220:-153.941,0,-241.565	0/0:133:132,1:132:4706:1:36:0,-36.4387,-420.1	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:81:81,0:81:2885:0:0:0,-24.3834,-259.885	0/1:52:25,27:25:892:27:947:-69.8866,0,-64.9461	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:181:180,1:180:6441:1:36:0,-50.8882,-576.169	0/1:94:46,48:46:1647:48:1724:-127.149,0,-120.221	0/0:211:211,0:211:7402:0:0:0,-63.5173,-666.228	0/0:217:217,0:217:7736:0:0:0,-65.3235,-696.269	0/0:138:138,0:138:4878:0:0:0,-41.5421,-439.173	0/0:131:131,0:131:4648:0:0:0,-39.4349,-418.479	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:135:135,0:135:4839:0:0:0,-40.639,-435.663	0/1:107:46,61:46:1614:61:2182:-164.431,0,-113.335	0/0:235:235,0:235:8373:0:0:0,-70.742,-753.572	0/0:63:63,0:63:2228:0:0:0,-18.9649,-200.785	0/0:79:79,0:79:2809:0:0:0,-23.7814,-253.049	0/0:51:51,0:51:1775:0:0:0,-15.3525,-160.027	0/0:126:126,0:126:4433:0:0:0,-37.9298,-399.14	0/1:24:11,13:11:373:13:468:-35.2349,0,-26.6705	0/0:62:62,0:62:2186:0:0:0,-18.6639,-197.003	0/0:72:72,0:72:2542:0:0:0,-21.6742,-229.029	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:78:43,35:43:1514:35:1256:-89.8557,0,-113.069	0/1:61:12,49:12:428:49:1764:-140.669,0,-20.496	0/0:164:164,0:164:5775:0:0:0,-49.3689,-519.863	0/0:107:106,1:106:3781:1:36:0,-28.6119,-336.89
chr02	19829913	.	A	G	17722	PASS	AB=0.489255;ABP=5.20362;AC=30;AF=0.159574;AN=188;AO=1081;CIGAR=1X;DP=9120;DPB=9120;DPRA=0.85294;EPP=2350.37;EPPR=17409.6;GTI=2;LEN=1;MEANALT=1.05405;MQM=59.6772;MQMR=59.9847;NS=94;NUMALT=1;ODDS=2.40117;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38702;QR=287854;RO=8036;RPL=1081;RPP=2350.37;RPPR=17409.6;RPR=0;RUN=1;SAF=0;SAP=2350.37;SAR=1081;SRF=0;SRP=17453;SRR=8036;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:138:138,0:138:4944:0:0:0,-41.5421,-445.109	0/0:286:284,2:284:10197:2:72:0,-79.2579,-910.816	0/1:52:27,25:27:968:25:896:-65.3006,0,-71.7838	0/1:36:20,16:20:697:16:572:-40.7854,0,-52.2136	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.319	0/0:157:157,0:157:5594:0:0:0,-47.2617,-503.154	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.2	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:50:49,1:49:1760:1:36:0,-11.4532,-155.086	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/1:78:42,36:42:1512:36:1287:-92.6423,0,-112.894	0/1:67:29,38:29:1044:38:1351:-101.714,0,-74.1058	0/1:50:25,25:25:900:25:900:-66.2695,0,-66.2695	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:40:17,23:17:612:23:828:-62.8029,0,-43.3722	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:186:106,79:106:3808:79:2836:-199.333,0,-286.866	0/1:172:77,95:77:2768:95:3404:-254.66,0,-197.584	0/0:152:152,0:152:5453:0:0:0,-45.7566,-490.895	0/0:160:159,1:159:5685:1:36:0,-44.5665,-508.167	0/1:15:6,9:6:216:9:324:-24.9858,0,-15.2751	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.102	0/0:275:275,0:275:9758:0:0:0,-82.7832,-878.11	0/0:208:208,0:208:7438:0:0:0,-62.6142,-669.462	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:259:142,117:142:5061:117:4179:-298.282,0,-377.666	0/0:130:130,0:130:4637:0:0:0,-39.1339,-417.493	0/1:122:72,50:72:2592:50:1794:-124.754,0,-196.802	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:188:188,0:188:6744:0:0:0,-56.5936,-607.032	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.961	0/1:47:21,26:21:756:26:936:-70.3947,0,-54.2188	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:168:168,0:168:6013:0:0:0,-50.573,-541.273	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:226:225,0:225:8084:0:0:0,-67.7317,-727.363	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:44:21,23:21:748:23:824:-61.2357,0,-54.4	0/0:135:135,0:135:4814:0:0:0,-40.639,-433.412	0/1:98:58,40:58:2061:40:1432:-99.6603,0,-156.258	0/0:174:174,0:174:6204:0:0:0,-52.3792,-558.455	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:110:109,1:109:3920:1:32:0,-29.914,-349.787	0/0:194:194,0:194:6964:0:0:0,-58.3998,-626.822	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:163:163,0:163:5845:0:0:0,-49.0679,-526.159	0/0:126:126,0:126:4532:0:0:0,-37.9298,-408.045	0/1:16:11,5:11:388:5:180:-11.7356,0,-30.4409	0/1:114:50,64:50:1783:64:2288:-171.855,0,-126.435	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:19:13,6:13:464:6:216:-14.0709,0,-36.377	0/0:87:87,0:87:3093:0:0:0,-26.1896,-278.597	0/0:100:99,1:99:3560:1:36:0,-26.5047,-317.008	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:207:207,0:207:7429:0:0:0,-62.3132,-668.644	0/1:175:91,84:91:3276:84:3000:-217.544,0,-242.378	0/0:34:33,1:33:1188:1:36:0,-6.63674,-103.63	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:153:89,64:89:3200:64:2300:-161.196,0,-242.165	0/0:136:135,1:135:4820:1:36:0,-37.3418,-430.358	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:81:81,0:81:2907:0:0:0,-24.3834,-261.864	0/1:56:29,27:29:1044:27:952:-69.1334,0,-77.4171	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:185:183,1:183:6549:1:36:0,-52.0762,-585.963	0/1:94:46,48:46:1648:48:1724:-127.149,0,-120.312	0/0:226:226,0:226:8090:0:0:0,-68.0328,-728.116	0/0:230:230,0:230:8247:0:0:0,-69.2369,-742.238	0/0:143:143,0:143:5091:0:0:0,-43.0473,-458.331	0/0:136:136,0:136:4892:0:0:0,-40.9401,-440.429	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:141:141,0:141:5049:0:0:0,-42.4452,-454.553	0/1:107:46,61:46:1656:61:2188:-164.967,0,-117.118	0/0:240:240,0:240:8605:0:0:0,-72.2472,-774.356	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:133:133,0:133:4771:0:0:0,-40.037,-429.545	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:80:44,36:44:1584:36:1292:-92.4921,0,-118.769	0/1:66:13,53:13:468:53:1896:-151.038,0,-22.5917	0/0:171:171,0:171:6060:0:0:0,-51.4761,-545.503	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.586
chr02	19860215	.	CAG	CAT,AAT	353183	PASS	AB=0.662074,0.336113;ABP=632.277,646.434;AC=159,29;AF=0.845745,0.154255;AN=188;AO=12432,940;CIGAR=2M1X,1X1M1X;DP=13401;DPB=13602;DPRA=0,0.750681;EPP=26886,2044.19;EPPR=9.52472;GTI=10;LEN=1,3;MEANALT=1.60638,2.14286;MQM=49.4749,29.1234;MQMR=48.6667;NS=94;NUMALT=2;ODDS=1231.79;PAIRED=0,0;PAIREDR=0;PAO=2,600.5;PQA=72,10669;PQR=18;PRO=0.5;QA=443819,33205;QR=90;RO=3;RPL=5523,0;RPP=338.547,2044.19;RPPR=9.52472;RPR=6909,940;RUN=1,1;SAF=5510,0;SAP=351.254,2044.19;SAR=6922,940;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42,0:0:0:42,0:1504,0:-135.489,-12.6433,0,-135.489,-12.6433,-135.489	1/1:88:0,88,0:0:0:88,0:3160,0:-284.596,-26.4906,0,-284.596,-26.4906,-284.596	1/1:110:0,110,0:0:0:110,0:3960,0:-356.429,-33.1133,0,-356.429,-33.1133,-356.429	1/1:384:0,384,0:0:0:384,0:13706,0:-1176.84,-115.596,0,-1176.84,-115.596,-1176.84	1/2:99:0,68,29:0:0:68,29:2436,1042:-254.767,-63.8652,-43.3952,-190.868,0,-182.138	1/2:24:0,6,17:0:0:6,17:216,602:-51.5417,-33.896,-32.0898,-17.6696,0,-12.5521	1/1:157:0,157,0:0:0:157,0:5558,0:-484.283,-47.2617,0,-484.283,-47.2617,-484.283	1/1:135:0,135,0:0:0:135,0:4817,0:-433.524,-40.6391,0,-433.524,-40.6391,-433.524	1/1:118:0,118,0:0:0:118,0:4201,0:-378.27,-35.5215,0,-378.27,-35.5215,-378.27	1/1:213:0,213,0:0:0:213,0:7607,0:-654.963,-64.1194,0,-654.963,-64.1194,-654.963	1/1:129:0,129,0:0:0:129,0:4574,0:-390.964,-38.8329,0,-390.964,-38.8329,-390.964	1/1:87:0,87,0:0:0:87,0:3117,0:-280.755,-26.1896,0,-280.755,-26.1896,-280.755	1/1:68:0,68,0:0:0:68,0:2440,0:-219.855,-20.47,0,-219.855,-20.47,-219.855	1/2:87:0,62,25:0:0:62,25:2204,846:-221.929,-53.0925,-34.4286,-168.949,0,-161.423	1/2:88:0,58,30:0:0:58,30:2079,1080:-232.55,-70.1185,-52.6588,-162.742,0,-153.711	1/2:73:0,52,21:0:0:52,21:1845,734:-190.862,-45.6832,-30.0296,-145.473,0,-139.151	1/1:22:0,22,0:0:0:22,0:781,0:-70.6121,-6.62266,0,-70.6121,-6.62266,-70.6121	1/2:35:0,13,22:0:0:13,22:468,790:-79.047,-40.8348,-36.9214,-38.2247,0,-31.602	1/1:32:0,32,0:0:0:32,0:1152,0:-103.99,-9.63296,0,-103.99,-9.63296,-103.99	1/2:226:0,155,71:0:0:155,71:5540,2510:-593.221,-163.468,-116.808,-429.898,0,-408.525	1/2:145:0,101,44:0:0:101,44:3604,1542:-371.626,-91.3309,-60.9268,-280.416,0,-267.171	1/1:143:0,142,0:0:0:142,0:5074,0:-426.251,-42.7463,0,-426.251,-42.7463,-426.251	1/1:149:0,148,0:0:0:148,0:5259,0:-453.137,-44.5524,0,-453.137,-44.5524,-453.137	1/2:113:0,97,16:0:0:97,16:3460,576:-299.132,-35.6214,-6.42153,-263.651,0,-258.835	1/1:136:0,136,0:0:0:136,0:4855,0:-428.438,-40.9401,0,-428.438,-40.9401,-428.438	1/1:523:0,522,0:0:0:522,0:18592,0:-1588.95,-157.138,0,-1588.95,-157.138,-1588.95	1/1:395:0,395,0:0:0:395,0:14100,0:-1220.59,-118.907,0,-1220.59,-118.907,-1220.59	1/1:64:0,64,0:0:0:64,0:2295,0:-200.139,-19.2659,0,-200.139,-19.2659,-200.139	1/2:374:0,239,135:0:0:239,135:8544,4774:-993.707,-327.268,-255.322,-666.639,0,-626	1/1:174:0,174,0:0:0:174,0:6204,0:-533.752,-52.3792,0,-533.752,-52.3792,-533.752	1/2:129:0,103,26:0:0:103,26:3676,895:-343.92,-59.6809,-28.6748,-284.371,0,-276.544	1/1:22:0,21,0:0:0:21,0:752,0:-66.7032,-6.32163,0,-66.7032,-6.32163,-66.7032	1/1:24:0,24,0:0:0:24,0:864,0:-74.0961,-7.22472,0,-74.0961,-7.22472,-74.0961	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:17:0,10,7:0:0:10,7:360,250:-42.9116,-13.4565,-10.4462,-29.6159,0,-27.5087	1/1:18:0,18,0:0:0:18,0:639,0:-57.8365,-5.41854,0,-57.8365,-5.41854,-57.8365	1/1:347:0,346,1:0:0:346,1:12364,36:-1062.86,-104.156,0,-1061.11,-102.179,-1060.81	1/1:215:0,214,0:0:0:214,0:7631,0:-652.017,-64.4204,0,-652.017,-64.4204,-652.017	1/2:54:0,29,25:0:0:29,25:1040,877:-134.098,-49.2307,-40.5008,-84.8848,0,-77.3591	1/2:3:0,1,2:0:0:1,2:36,64:-7.46495,-4.49705,-4.19602,-3.29724,0,-2.69518	1/1:899:0,899,0:0:0:899,0:32236,0:-2871.67,-270.626,0,-2871.67,-270.626,-2871.67	1/1:67:0,67,0:0:0:67,0:2396,0:-210.856,-20.169,0,-210.856,-20.169,-210.856	1/1:165:0,165,0:0:0:165,0:5881,0:-507.3,-49.67,0,-507.3,-49.67,-507.3	1/1:132:0,132,0:0:0:132,0:4721,0:-404.843,-39.736,0,-404.843,-39.736,-404.843	1/2:85:0,64,21:0:0:64,21:2264,740:-223.839,-47.3712,-28.1053,-176.765,0,-170.443	1/1:175:0,175,0:0:0:175,0:6288,0:-548.384,-52.6803,0,-548.384,-52.6803,-548.384	1/2:77:0,50,27:0:0:50,27:1773,964:-199.239,-54.7501,-39.6986,-144.501,0,-136.374	1/1:297:0,296,0:0:0:296,0:10552,0:-905.905,-89.1049,0,-905.905,-89.1049,-905.905	1/1:210:0,209,0:0:0:209,0:7486,0:-646.301,-62.9153,0,-646.301,-62.9153,-646.301	1/1:258:0,254,0:0:0:254,0:9078,0:-777.035,-76.4616,0,-777.035,-76.4616,-777.035	1/1:322:0,321,0:0:0:321,0:11471,0:-998.853,-96.6306,0,-998.853,-96.6306,-998.853	1/2:18:0,14,4:0:0:14,4:500,144:-48.9297,-9.82466,-5.61024,-39.4132,0,-38.2091	1/1:279:0,278,1:0:0:278,1:9967,36:-896.706,-83.6863,0,-894.705,-81.4287,-894.404	1/1:88:0,88,0:0:0:88,0:3145,0:-274.013,-26.4906,0,-274.013,-26.4906,-274.013	1/2:7:0,1,6:0:0:1,6:36,214:-14.8552,-11.9032,-11.6021,-3.0053,0,-1.19912	1/2:161:0,101,60:0:0:101,60:3632,2117:-413.463,-130.921,-100.517,-282.676,0,-264.614	1/1:77:0,77,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chr02	19979478	.	G	C	26010.4	PASS	AB=0.489264;ABP=6.27417;AC=29;AF=0.154255;AN=188;AO=1604;CIGAR=1X;DP=12410;DPB=12410;DPRA=0.876916;EPP=3486.05;EPPR=23428.9;GTI=0;LEN=1;MEANALT=1.24242;MQM=59.9963;MQMR=59.9961;NS=94;NUMALT=1;ODDS=13.9233;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56749;QR=383820;RO=10792;RPL=1604;RPP=3486.05;RPPR=23428.9;RPR=0;RUN=1;SAF=1604;SAP=3486.05;SAR=0;SRF=10792;SRP=23437.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:193:193,0:193:6860:0:0:0,-58.0988,-617.47	0/0:315:315,0:315:11195:0:0:0,-94.8244,-1007.45	0/0:337:336,0:336:11918:0:0:0,-101.146,-1072.12	0/1:69:34,35:34:1216:35:1251:-92.1232,0,-88.9755	0/1:80:33,47:33:1180:47:1670:-126.503,0,-82.4256	0/0:205:205,0:205:7260:0:0:0,-61.7111,-653.458	0/0:185:185,0:185:6550:0:0:0,-55.6905,-588.812	0/0:148:148,0:148:5261:0:0:0,-44.5524,-473.626	0/0:136:136,0:136:4839:0:0:0,-40.9401,-435.664	0/0:49:49,0:49:1720:0:0:0,-14.7505,-155.082	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:55:22,33:22:784:33:1163:-88.4195,0,-54.3273	0/1:65:22,43:22:779:43:1515:-117.075,0,-50.8651	0/1:36:24,12:24:848:12:432:-28.3841,0,-65.8026	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/1:50:25,25:25:887:25:881:-64.5544,0,-65.0966	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:253:150,103:150:5321:103:3640:-251.643,0,-402.865	0/1:186:74,112:74:2626:112:3960:-300.599,0,-180.596	0/0:220:220,0:220:7815:0:0:0,-66.2266,-703.384	0/0:166:166,0:166:5936:0:0:0,-49.971,-534.346	0/1:219:95,124:95:3382:124:4415:-331.596,0,-238.67	0/0:106:106,0:106:3759:0:0:0,-31.9092,-338.51	0/0:444:443,0:443:15843:0:0:0,-133.356,-1425.2	0/0:319:319,0:319:11353:0:0:0,-96.0286,-1021.66	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/1:389:223,163:223:7884:163:5763:-402.231,0,-593.035	0/0:116:116,0:116:4114:0:0:0,-34.9195,-370.447	0/1:202:121,81:121:4276:81:2874:-198.089,0,-324.213	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:32:32,0:32:1116:0:0:0,-9.63296,-100.745	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:18:7,11:7:237:11:383:-29.3847,0,-16.2405	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:208:208,0:208:7374:0:0:0,-62.6142,-663.711	0/0:349:348,0:348:12360:0:0:0,-104.758,-1111.89	0/1:87:40,47:40:1440:47:1652:-122.775,0,-103.708	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:165:165,0:165:5868:0:0:0,-49.6699,-528.233	0/0:48:48,0:48:1699:0:0:0,-14.4494,-153.195	0/0:133:133,0:133:4740:0:0:0,-40.037,-426.756	0/0:60:60,0:60:2147:0:0:0,-18.0618,-193.497	0/1:57:37,20:37:1320:20:712:-47.2479,0,-101.943	0/0:157:157,0:157:5615:0:0:0,-47.2617,-505.472	0/1:214:89,124:89:3155:124:4431:-334.482,0,-219.695	0/0:313:310,2:310:10956:2:72:0,-87.4445,-979.112	0/0:214:214,0:214:7621:0:0:0,-64.4204,-685.928	0/0:209:208,0:208:7434:0:0:0,-62.6142,-668.746	0/0:312:312,0:312:11095:0:0:0,-93.9214,-998.446	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	0/0:184:184,0:184:6560:0:0:0,-55.3895,-590.483	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.977	0/1:31:12,19:12:423:19:652:-49.6663,0,-29.0731	0/1:151:83,68:83:2940:68:2377:-168.73,0,-219.378	0/0:76:76,0:76:2714:0:0:0,-22.8783,-244.503	0/1:36:24,12:24:860:12:432:-28.3841,0,-66.8848	0/1:24:11,13:11:392:13:459:-34.4194,0,-28.3953	0/0:110:110,0:110:3929:0:0:0,-33.1133,-353.801	0/0:94:94,0:94:3355:0:0:0,-28.2968,-302.167	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:260:259,0:259:9233:0:0:0,-77.9668,-830.583	0/1:324:170,153:170:6068:153:5401:-388.633,0,-448.63	0/0:109:104,5:104:3687:5:176:0,-16.6272,-315.85	0/0:173:171,1:171:6102:1:36:0,-48.5387,-545.684	0/1:212:113,98:113:4015:98:3450:-246.837,0,-297.664	0/0:138:137,1:137:4864:1:36:0,-37.9439,-434.317	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/1:69:30,39:30:1068:39:1378:-103.546,0,-75.661	0/0:38:38,0:38:1350:0:0:0,-11.4391,-121.799	0/0:168:168,0:168:5970:0:0:0,-50.573,-537.408	0/1:101:49,52:49:1736:52:1816:-133.312,0,-126.118	0/0:246:246,0:246:8769:0:0:0,-74.0534,-789.202	0/0:253:253,0:253:9009:0:0:0,-76.1606,-810.789	0/0:151:151,0:151:5377:0:0:0,-45.4555,-484.063	0/0:148:148,0:148:5281:0:0:0,-44.5524,-475.426	0/0:43:43,0:43:1522:0:0:0,-12.9443,-137.272	0/0:192:192,0:192:6840:0:0:0,-57.7978,-615.672	0/1:119:68,50:68:2416:50:1777:-124.369,0,-181.852	0/0:364:364,0:364:12960:0:0:0,-109.575,-1166.22	0/0:68:68,0:68:2412:0:0:0,-20.47,-217.335	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.282	0/0:96:96,0:96:3413:0:0:0,-28.8989,-307.384	0/0:121:121,0:121:4310:0:0:0,-36.4246,-388.077	0/1:33:20,13:20:708:13:464:-32.1635,0,-54.1116	0/0:69:69,0:69:2443:0:0:0,-20.7711,-220.126	0/0:76:76,0:76:2680:0:0:0,-22.8783,-241.445	0/0:25:25,0:25:864:0:0:0,-7.52575,-78.0723	0/1:83:43,40:43:1523:40:1409:-102.12,0,-112.377	0/1:69:25,44:25:879:44:1568:-120.641,0,-58.6557	0/0:94:94,0:94:3344:0:0:0,-28.2968,-301.176	0/0:93:93,0:93:3283:0:0:0,-27.9958,-295.69
chr02	19979530	.	A	T	223130	PASS	AB=0.512314;ABP=6.80718;AC=157;AF=0.835106;AN=188;AO=9851;CIGAR=1X;DP=11280;DPB=11280;DPRA=22.2708;EPP=20679.3;EPPR=3017.62;GTI=4;LEN=1;MEANALT=1.01087;MQM=59.8312;MQMR=59.9671;NS=94;NUMALT=1;ODDS=1.6392;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=352731;QR=51207;RO=1428;RPL=9769;RPP=20687.9;RPPR=3017.62;RPR=82;RUN=1;SAF=1;SAP=21385.5;SAR=9850;SRF=0;SRP=3103.87;SRR=1428;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1400:-126.297,-11.7402,0	1/1:279:2,277:2:72:277:9911:-885.055,-77.1506,0	1/1:113:0,113:0:0:113:4036:-363.41,-34.0164,0	1/1:266:0,266:0:0:266:9531:-857.727,-80.074,0	0/1:85:36,49:36:1292:49:1755:-132.018,0,-90.9962	0/1:69:35,34:35:1256:34:1212:-88.6147,0,-92.5742	1/1:190:0,190:0:0:190:6830:-614.747,-57.1957,0	1/1:211:0,211:0:0:211:7562:-680.578,-63.5173,0	1/1:129:0,129:0:0:129:4603:-414.418,-38.8329,0	1/1:118:0,118:0:0:118:4193:-377.552,-35.5215,0	1/1:76:0,76:0:0:76:2715:-244.593,-22.8783,0	1/1:78:0,78:0:0:78:2784:-250.368,-23.4803,0	1/1:68:0,68:0:0:68:2416:-217.254,-20.47,0	0/1:80:41,39:41:1476:39:1396:-101.855,0,-109.054	0/1:73:35,38:35:1260:38:1368:-101.446,0,-91.7303	0/1:53:20,33:20:720:33:1184:-90.9137,0,-49.1742	1/1:92:0,92:0:0:92:3304:-297.568,-27.6948,0	0/1:74:34,40:34:1220:40:1432:-106.899,0,-87.8306	1/1:56:0,56:0:0:56:1996:-179.045,-16.8577,0	0/1:216:117,99:117:4200:99:3542:-253.953,0,-313.157	0/1:206:98,108:98:3503:108:3876:-286.932,0,-253.468	1/1:159:0,159:0:0:159:5716:-514.548,-47.8638,0	1/1:50:0,50:0:0:50:1792:-161.526,-15.0515,0	0/1:139:73,66:73:2611:66:2352:-170.096,0,-193.394	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0	1/1:434:3,431:3:108:431:15468:-1381.53,-120.572,0	1/1:232:0,232:0:0:232:8324:-749.131,-69.839,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:328:177,151:177:6337:151:5420:-389.172,0,-471.681	1/1:209:0,209:0:0:209:7469:-672.231,-62.9153,0	0/1:158:74,84:74:2643:84:3003:-222.919,0,-190.554	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:10:0,10:0:0:10:360:-32.7435,-3.0103,0	1/1:231:0,231:0:0:231:8263:-743.654,-69.5379,0	1/1:248:0,248:0:0:248:8878:-798.521,-74.6554,0	0/1:91:37,54:37:1328:54:1932:-146.759,0,-92.4285	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:215:0,215:0:0:215:7703:-693.212,-64.7215,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:169:0,169:0:0:169:6039:-543.519,-50.8741,0	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	0/1:70:31,39:31:1116:39:1396:-104.867,0,-79.662	1/1:98:0,98:0:0:98:3509:-316.013,-29.5009,0	0/1:127:60,67:60:2160:67:2392:-177.306,0,-156.436	1/1:232:0,232:0:0:232:8316:-748.356,-69.839,0	1/1:140:0,140:0:0:140:4995:-449.641,-42.1442,0	1/1:129:0,129:0:0:129:4605:-414.614,-38.8329,0	1/1:269:0,269:0:0:269:9660:-869.339,-80.9771,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:211:0,211:0:0:211:7573:-681.575,-63.5173,0	1/1:109:0,109:0:0:109:3905:-351.63,-32.8123,0	0/1:17:4,13:4:144:13:468:-37.3406,0,-8.19611	0/1:148:68,80:68:2448:80:2860:-213.043,0,-176.022	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:30:10,20:10:360:20:712:-55.3758,0,-23.7134	1/1:131:0,131:0:0:131:4694:-422.62,-39.4349,0	1/1:138:0,138:0:0:138:4927:-443.581,-41.5421,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:254:0,254:0:0:254:9102:-818.893,-76.4616,0	0/1:235:108,127:108:3871:127:4549:-338.707,0,-277.842	1/1:154:1,153:1:36:153:5473:-489.097,-42.7603,0	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	0/1:164:84,80:84:3004:80:2872:-208.696,0,-221.137	1/1:184:1,183:1:36:183:6534:-584.544,-51.7912,0	1/1:30:0,29:0:0:29:1032:-92.8338,-8.72987,0	1/1:124:0,124:0:0:124:4442:-399.769,-37.3277,0	0/1:96:43,53:43:1539:53:1904:-142.734,0,-109.817	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:218:0,218:0:0:218:7796:-701.652,-65.6245,0	0/1:51:28,23:28:1004:23:828:-59.4916,0,-75.3233	1/1:191:0,191:0:0:191:6814:-612.289,-57.4967,0	1/1:216:2,214:2:72:214:7661:-682.651,-58.1858,0	1/1:150:0,150:0:0:150:5372:-483.608,-45.1545,0	1/1:152:2,150:2:72:150:5380:-477.429,-38.9198,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:152:0,152:0:0:152:5461:-491.615,-45.7566,0	0/1:137:73,64:73:2628:64:2292:-165.19,0,-195.525	1/1:237:0,237:0:0:237:8512:-766.07,-71.3441,0	1/1:120:0,120:0:0:120:4272:-384.572,-36.1236,0	1/1:57:0,57:0:0:57:2025:-182.521,-17.1587,0	1/1:75:0,75:0:0:75:2685:-241.839,-22.5773,0	1/1:166:0,166:0:0:166:5934:-534.157,-49.971,0	0/1:49:27,22:27:963:22:792:-56.8537,0,-72.2355	1/1:73:0,73:0:0:73:2617:-235.548,-21.9752,0	1/1:54:0,54:0:0:54:1940:-174.873,-16.2556,0	1/1:48:0,48:0:0:48:1709:-154.094,-14.4494,0	0/1:115:54,61:54:1936:61:2183:-162.117,0,-139.898	0/1:53:32,21:32:1144:21:752:-52.0517,0,-87.3149	1/1:113:0,113:0:0:113:4052:-364.781,-34.0164,0	1/1:88:0,88:0:0:88:3145:-283.257,-26.4906,0
chr02	19989195	.	CATT	TGTT,CGTT	167248	PASS	AB=0.577967,0.416179;ABP=102.222,117.68;AC=152,34;AF=0.817204,0.182796;AN=186;AO=6535,1087;CIGAR=2X2M,1M1X2M;DP=7657;DPB=7657;DPRA=0,0.95192;EPP=14193.6,2363.4;EPPR=9.52472;GTI=2;LEN=2,1;MEANALT=1.66667,2.25;MQM=59.5767,59.8997;MQMR=37.3333;NS=93;NUMALT=2;ODDS=3.28803;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=231266,38789;QR=108;RO=3;RPL=0,0;RPP=14193.6,2363.4;RPPR=9.52472;RPR=6535,1087;RUN=1,1;SAF=6535,1087;SAP=14193.6,2363.4;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:100:0,100,0:0:0:100,0:3540,0:-318.624,-30.103,0,-318.624,-30.103,-318.624	1/1:126:0,126,0:0:0:126,0:4460,0:-401.533,-37.9298,0,-401.533,-37.9298,-401.533	1/1:169:0,168,0:0:0:168,0:5941,0:-534.476,-50.573,0,-534.476,-50.573,-534.476	1/2:16:0,7,9:0:0:7,9:252,324:-47.3585,-26.7966,-24.6894,-20.9217,0,-18.2125	1/2:14:0,11,3:0:0:11,3:396,108:-41.4673,-9.17208,-5.86075,-32.655,0,-31.7519	1/1:30:0,29,0:0:0:29,0:1027,0:-92.4718,-8.72987,0,-92.4718,-8.72987,-92.4718	1/1:128:0,127,0:0:0:127,0:4501,0:-404.972,-38.2308,0,-404.972,-38.2308,-404.972	1/1:135:0,135,0:0:0:135,0:4753,0:-427.69,-40.6391,0,-427.69,-40.6391,-427.69	1/1:56:0,56,0:0:0:56,0:1966,0:-177.207,-16.8577,0,-177.207,-16.8577,-177.207	1/1:62:0,60,0:0:0:60,0:2106,0:-189.435,-18.0618,0,-189.435,-18.0618,-189.435	1/1:99:0,99,0:0:0:99,0:3487,0:-313.941,-29.802,0,-313.941,-29.802,-313.941	1/1:96:2,93,1:2:72:93,1:3282,36:-290.39,-24.0615,0,-288.055,-25.0237,-291.755	1/2:77:0,50,27:0:0:50,27:1773,946:-221.759,-77.3219,-62.2704,-144.788,0,-136.661	1/2:93:0,54,39:0:0:54,39:1919,1400:-270.932,-114.559,-98.3034,-156.73,0,-144.99	1/2:62:0,38,24:0:0:38,24:1337,845:-177.964,-69.1424,-57.7032,-109.173,0,-101.948	1/1:67:0,67,0:0:0:67,0:2376,0:-214.085,-20.169,0,-214.085,-20.169,-214.085	1/2:42:0,17,25:0:0:17,25:608,892:-122.651,-73.0739,-67.9564,-49.9345,0,-42.4088	1/1:27:0,26,0:0:0:26,0:934,0:-84.0061,-7.82678,0,-84.0061,-7.82678,-84.0061	1/2:79:0,45,34:0:0:45,34:1605,1216:-230.069,-99.5115,-85.9652,-130.914,0,-120.679	1/2:193:0,110,83:0:0:110,83:3903,2965:-560.077,-242.096,-208.983,-318.337,0,-293.351	1/1:36:0,36,0:0:0:36,0:1282,0:-115.681,-10.8371,0,-115.681,-10.8371,-115.681	1/1:79:0,79,0:0:0:79,0:2824,0:-254.384,-23.7814,0,-254.384,-23.7814,-254.384	1/2:57:0,38,19:0:0:38,19:1327,680:-163.737,-55.8096,-44.3705,-108.283,0,-102.563	1/1:25:0,25,0:0:0:25,0:885,0:-79.9676,-7.52575,0,-79.9676,-7.52575,-79.9676	1/1:259:0,259,0:0:0:259,0:9109,0:-819.775,-77.9668,0,-819.775,-77.9668,-819.775	1/1:193:0,193,0:0:0:193,0:6919,0:-622.732,-58.0988,0,-622.732,-58.0988,-622.732	1/1:37:0,37,0:0:0:37,0:1313,0:-118.461,-11.1381,0,-118.461,-11.1381,-118.461	1/2:171:0,110,59:0:0:110,59:3886,2112:-488.801,-172.345,-139.231,-316.569,0,-298.808	1/1:129:0,129,0:0:0:129,0:4545,0:-409.176,-38.8329,0,-409.176,-38.8329,-409.176	1/2:51:0,30,21:0:0:30,21:1065,756:-148.817,-62.0456,-53.0147,-87.1293,0,-80.8077	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	.:.:.:.:.:.:.:.	2/2:88:0,3,85:0:0:3,85:106,3029:-272.486,-263.853,-262.95,-25.5876,-16.6015,0	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:202:0,201,0:0:0:201,0:7093,0:-637.665,-60.507,0,-637.665,-60.507,-637.665	1/1:63:0,63,0:0:0:63,0:2189,0:-197.267,-18.9649,0,-197.267,-18.9649,-197.267	1/2:44:0,17,27:0:0:17,27:585,972:-127.155,-79.6678,-74.5502,-47.8376,0,-39.7098	2/2:75:0,1,74:0:0:1,74:34,2647:-237.865,-235.107,-234.806,-22.2762,-19.1783,0	1/1:80:0,79,0:0:0:79,0:2787,0:-250.818,-23.7814,0,-250.818,-23.7814,-250.818	1/1:28:0,28,0:0:0:28,0:982,0:-88.6806,-8.42884,0,-88.6806,-8.42884,-88.6806	1/1:98:0,97,1:0:0:97,1:3444,36:-309.67,-29.1999,0,-306.732,-25.9027,-306.431	1/1:79:0,79,0:0:0:79,0:2814,0:-253.476,-23.7814,0,-253.476,-23.7814,-253.476	1/2:55:0,38,17:0:0:38,17:1358,612:-160.747,-50.2959,-38.8568,-110.81,0,-105.693	1/1:44:0,44,0:0:0:44,0:1559,0:-140.597,-13.2453,0,-140.597,-13.2453,-140.597	1/2:45:0,31,14:0:0:31,14:1094,504:-130.54,-41.4837,-32.1517,-89.414,0,-85.1995	1/1:120:0,118,1:0:0:118,1:4132,36:-371.727,-35.5215,0,-368.79,-32.5292,-368.489	1/1:82:0,82,0:0:0:82,0:2861,0:-257.719,-24.6845,0,-257.719,-24.6845,-257.719	1/1:151:0,150,0:0:0:150,0:5339,0:-480.384,-45.1545,0,-480.384,-45.1545,-480.384	1/1:24:0,23,0:0:0:23,0:820,0:-73.7614,-6.92369,0,-73.7614,-6.92369,-73.7614	2/2:63:0,4,59:0:0:4,59:144,2082:-187.259,-175.509,-174.305,-17.7608,-5.65127,0	1/1:73:0,73,0:0:0:73,0:2568,0:-231.064,-21.9752,0,-231.064,-21.9752,-231.064	1/1:31:0,31,0:0:0:31,0:1106,0:-99.848,-9.33193,0,-99.848,-9.33193,-99.848	2/2:21:0,1,20:0:0:1,20:36,720:-64.7689,-61.8315,-61.5305,-6.0206,-2.72336,0	1/2:156:0,100,55:0:0:100,55:3518,1980:-447.95,-161.675,-131.572,-286.4,0,-269.843	1/1:24:0,23,1:0:0:23,1:807,36:-72.5783,-6.92369,0,-69.6405,-3.62645,-69.3395	2/2:60:0,4,55:0:0:4,55:144,1956:-175.956,-164.207,-163.003,-16.5567,-4.80791,0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chr02	20061006	.	T	C	17877.5	PASS	AB=0.475066;ABP=15.3552;AC=27;AF=0.145161;AN=186;AO=1097;CIGAR=1X;DP=8648;DPB=8648;DPRA=1.17171;EPP=2385.12;EPPR=16399.8;GTI=1;LEN=1;MEANALT=1;MQM=59.8624;MQMR=59.9689;NS=93;NUMALT=1;ODDS=1.30412;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39285;QR=270604;RO=7551;RPL=1097;RPP=2385.12;RPPR=16399.8;RPR=0;RUN=1;SAF=0;SAP=2385.12;SAR=1097;SRF=0;SRP=16399.8;SRR=7551;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:474:0:0:0,-4.21442,-42.9797	0/0:107:107,0:107:3795:0:0:0,-32.2102,-341.746	0/0:130:130,0:130:4646:0:0:0,-39.1339,-418.299	0/0:187:186,1:186:6669:1:36:0,-52.6943,-596.686	0/1:48:29,19:29:1025:19:684:-47.4405,0,-78.1113	0/1:32:17,15:17:608:15:540:-39.3036,0,-45.4191	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/0:95:94,1:94:3372:1:36:0,-24.9996,-300.097	0/0:111:111,0:111:3969:0:0:0,-33.4143,-357.391	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:107:55,52:55:1980:52:1855:-135.018,0,-146.264	0/1:62:36,26:36:1292:26:936:-65.8947,0,-97.9199	0/1:56:26,30:26:936:30:1075:-80.2042,0,-67.7018	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:53:24,29:24:852:29:1040:-77.9598,0,-61.0458	0/0:52:52,0:52:1834:0:0:0,-15.6536,-165.337	0/1:145:79,66:79:2836:66:2368:-169.233,0,-211.829	0/1:102:42,60:42:1508:60:2148:-162.881,0,-105.306	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:71:35,36:35:1256:36:1296:-95.5626,0,-91.9722	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.864	0/0:389:386,3:386:13842:3:108:0,-107.025,-1234.82	0/0:188:188,0:188:6752:0:0:0,-56.5936,-607.751	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:273:145,128:145:5216:128:4577:-329.909,0,-387.394	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.824	0/1:149:78,71:78:2758:71:2529:-183.006,0,-203.607	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:8,3:8:288:3:104:-6.39148,0,-22.9561	0/0:4:4,0:4:125:0:0:0,-1.20412,-11.5586	0/0:187:185,2:185:6640:2:72:0,-49.4559,-590.838	0/0:217:217,0:217:7780:0:0:0,-65.3235,-700.227	0/1:91:49,42:49:1760:42:1499:-107.81,0,-131.29	.:.:.:.:.:.:.:.	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/0:56:56,0:56:1997:0:0:0,-16.8577,-179.957	0/0:99:99,0:99:3507:0:0:0,-29.802,-315.837	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:66:36,30:36:1296:30:1072:-76.8505,0,-97.076	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:51:34,17:34:1224:17:612:-40.0609,0,-95.1145	0/0:180:179,1:179:6412:1:36:0,-50.5871,-572.295	0/0:103:103,0:103:3670:0:0:0,-31.0061,-330.5	0/0:109:109,0:109:3900:0:0:0,-32.8123,-351.176	0/0:117:117,0:117:4208:0:0:0,-35.2205,-378.899	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:152:152,0:152:5445:0:0:0,-45.7566,-490.159	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5479	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:95:60,35:60:2152:35:1260:-85.1068,0,-165.349	0/0:30:29,1:29:1040:1:36:0,-5.43262,-90.3161	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:85:85,0:85:3033:0:0:0,-25.5875,-273.196	0/0:173:173,0:173:6220:0:0:0,-52.0782,-559.884	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:213:213,0:213:7614:0:0:0,-64.1194,-685.295	0/1:140:77,63:77:2760:63:2248:-160.435,0,-206.497	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.877	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/1:184:94,90:94:3368:90:3209:-233.639,0,-247.946	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:125:69,56:69:2484:56:2016:-144.052,0,-186.184	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/1:37:24,13:24:864:13:468:-31.3215,0,-66.9445	0/0:191:191,0:191:6841:0:0:0,-57.4967,-615.757	0/0:177:177,0:177:6330:0:0:0,-53.2823,-569.788	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.751	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/1:110:47,63:47:1692:63:2249:-169.558,0,-119.454	0/0:234:234,0:234:8412:0:0:0,-70.441,-757.079	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.768	0/0:152:151,1:151:5412:1:36:0,-42.1583,-483.609	0/1:34:15,19:15:540:19:684:-51.6553,0,-38.7015	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/1:164:88,76:88:3145:76:2736:-197.11,0,-233.859	0/1:62:25,37:25:900:37:1324:-100.796,0,-62.6572	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.777	0/0:76:75,1:75:2692:1:36:0,-19.28,-238.926
chr02	20179076	.	T	A	87700.3	PASS	AB=0.472399;ABP=9.24349;AC=164;AF=0.87234;AN=188;AO=3902;CIGAR=1X;DP=4420;DPB=4420;DPRA=8.71344;EPP=8415.4;EPPR=1104.01;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.7171;MQMR=59.9553;NS=94;NUMALT=1;ODDS=2.65714;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139711;QR=18452;RO=515;RPL=3895;RPP=8415.4;RPPR=1104.01;RPR=7;RUN=1;SAF=3902;SAP=8476.1;SAR=0;SRF=515;SRP=1121.32;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:81:0,81:0:0:81:2901:-261.317,-24.3834,0	1/1:21:0,21:0:0:21:752:-68.0032,-6.32163,0	1/1:45:0,45:0:0:45:1616:-145.685,-13.5464,0	1/1:65:0,65:0:0:65:2304:-207.587,-19.567,0	1/1:69:0,69:0:0:69:2445:-220.304,-20.7711,0	1/1:41:0,41:0:0:41:1461:-131.783,-12.3422,0	1/1:44:0,44:0:0:44:1584:-142.849,-13.2453,0	1/1:36:0,36:0:0:36:1296:-116.906,-10.8371,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:41:0,41:0:0:41:1476:-133.133,-12.3422,0	1/1:33:2,31:2:72:31:1114:-93.7311,-3.09727,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:27:0,27:0:0:27:972:-87.668,-8.12781,0	1/1:29:0,29:0:0:29:1044:-94.2744,-8.72987,0	1/1:131:0,131:0:0:131:4684:-421.699,-39.4349,0	1/1:54:0,54:0:0:54:1910:-172.169,-16.2556,0	1/1:70:0,70:0:0:70:2505:-225.669,-21.0721,0	1/1:24:0,24:0:0:24:860:-77.7172,-7.22472,0	0/1:65:35,30:35:1237:30:1080:-77.9432,0,-92.0653	1/1:44:0,44:0:0:44:1580:-142.488,-13.2453,0	0/1:185:92,93:92:3303:93:3310:-242.417,0,-241.797	1/1:74:0,74:0:0:74:2637:-237.543,-22.2762,0	0/1:18:10,8:10:360:8:288:-20.8473,0,-27.3258	1/1:84:0,84:0:0:84:3001:-270.278,-25.2865,0	1/1:55:2,53:2:72:53:1874:-162.095,-9.71993,0	0/1:42:23,19:23:816:19:669:-47.8883,0,-61.1185	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:120:0,120:0:0:120:4312:-388.249,-36.1236,0	1/1:99:0,99:0:0:99:3534:-318.258,-29.802,0	1/1:32:1,31:1:36:31:1116:-97.1453,-6.03469,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:70:31,39:31:1112:39:1389:-104.232,0,-79.3192	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	1/1:57:0,57:0:0:57:2048:-184.59,-17.1587,0	1/1:30:0,30:0:0:30:1080:-97.5063,-9.0309,0	1/1:38:0,38:0:0:38:1364:-123.013,-11.4391,0	1/1:84:0,83:0:0:83:2980:-268.067,-24.9855,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:86:53,33:53:1900:33:1165:-79.16,0,-145.389	1/1:84:0,84:0:0:84:3012:-271.302,-25.2865,0	1/1:60:0,60:0:0:60:2150:-193.699,-18.0618,0	1/1:124:0,124:0:0:124:4441:-399.831,-37.3277,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:64:38,26:38:1364:26:936:-65.2935,0,-103.795	1/1:34:0,34:0:0:34:1224:-110.464,-10.235,0	0/1:15:12,3:12:428:3:108:-5.55972,0,-34.3434	0/1:34:11,23:11:396:23:824:-64.2483,0,-25.7477	1/1:24:0,24:0:0:24:864:-77.4537,-7.22472,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:13:0,13:0:0:13:468:-41.9652,-3.91339,0	1/1:60:0,60:0:0:60:2160:-194.55,-18.0618,0	1/1:85:0,85:0:0:85:3040:-273.781,-25.5876,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:89:0,89:0:0:89:3195:-287.762,-26.7917,0	1/1:80:2,78:2:72:78:2789:-244.395,-17.2457,0	0/1:38:27,11:27:972:11:396:-24.5421,0,-76.2889	1/1:13:0,13:0:0:13:468:-42.4573,-3.91339,0	1/1:61:0,61:0:0:61:2192:-197.536,-18.3628,0	1/1:58:0,58:0:0:58:2076:-187.102,-17.4597,0	1/1:9:0,9:0:0:9:324:-29.5043,-2.70927,0	1/1:56:0,56:0:0:56:1993:-179.633,-16.8577,0	1/1:55:0,55:0:0:55:1980:-178.473,-16.5567,0	0/1:17:4,13:4:144:13:453:-35.9821,0,-8.19611	1/1:60:0,60:0:0:60:2149:-193.677,-18.0618,0	0/1:35:7,28:7:248:28:1008:-80.4988,0,-12.1281	1/1:77:0,77:0:0:77:2718:-244.657,-23.1793,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	0/1:44:31,13:31:1116:13:468:-29.2143,0,-87.5064	1/1:39:0,39:0:0:39:1389:-124.286,-11.7402,0	1/1:7:0,7:0:0:7:248:-22.627,-2.10721,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:40:19,21:19:680:21:756:-56.1959,0,-49.488	1/1:123:0,123:0:0:123:4375:-393.832,-37.0267,0	1/1:74:0,74:0:0:74:2660:-239.626,-22.2762,0	1/1:19:0,19:0:0:19:684:-61.8856,-5.71957,0	1/1:53:0,51:0:0:51:1836:-165.147,-15.3525,0	1/1:61:0,61:0:0:61:2188:-197.182,-18.3628,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:44:17,27:17:612:27:972:-74.5526,0,-42.1681	0/1:34:15,19:15:536:19:684:-51.6553,0,-38.3398	1/1:16:0,16:0:0:16:576:-52.1734,-4.81648,0	0/1:48:35,13:35:1252:13:468:-28.0087,0,-98.535	0/1:32:23,9:23:828:9:324:-19.8729,0,-65.2112	1/1:37:0,37:0:0:37:1332:-120.178,-11.1381,0	1/1:51:0,51:0:0:51:1836:-165.516,-15.3525,0
chr02	20413673	.	T	C	61040.8	PASS	AB=0.484373;ABP=18.8235;AC=30;AF=0.159574;AN=188;AO=3632;CIGAR=1X;DP=16822;DPB=16822;DPRA=1.90707;EPP=7725.63;EPPR=27630.8;GTI=5;LEN=1;MEANALT=1.06667;MQM=59.9813;MQMR=59.9939;NS=94;NUMALT=1;ODDS=0.745281;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129663;QR=471828;RO=13183;RPL=19;RPP=7725.63;RPPR=27630.8;RPR=3613;RUN=1;SAF=3632;SAP=7889.8;SAR=0;SRF=13183;SRP=28629.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:99:99,0:99:3533:0:0:0,-29.802,-318.178	0/0:74:73,1:73:2615:1:21:0,-20.1763,-233.497	0/0:124:124,0:124:4445:0:0:0,-37.3277,-400.218	0/1:59:42,17:42:1508:17:612:-37.6527,0,-118.254	0/1:21:3,18:3:108:18:644:-51.969,0,-3.75354	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/0:596:595,1:595:21330:1:36:0,-175.816,-1915.56	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:95:45,50:45:1597:50:1788:-132.605,0,-115.42	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/1:39:19,20:19:684:20:720:-53.3886,0,-50.1502	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:41:20,21:20:716:21:752:-55.664,0,-52.4255	0/0:191:191,0:191:6839:0:0:0,-57.4967,-615.579	0/1:76:43,33:43:1548:33:1169:-82.6376,0,-116.735	0/1:71:26,45:26:932:45:1603:-123.186,0,-62.8257	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:59:26,33:26:917:33:1188:-89.4678,0,-65.0838	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:199:199,0:199:7107:0:0:0,-59.905,-639.685	0/0:102:102,0:102:3638:0:0:0,-30.7051,-327.622	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:146:146,0:146:5243:0:0:0,-43.9504,-472.005	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.728	0/1:52:29,23:29:1044:23:824:-58.8298,0,-78.6212	0/0:519:516,0:516:18512:0:0:0,-155.331,-1665.39	0/0:684:684,0:684:24467:0:0:0,-205.905,-2201.35	0/0:724:724,0:724:25858:0:0:0,-217.946,-2326.49	0/1:1881:1048,833:1048:37511:833:29694:-2105.34,0,-2808.51	0/0:461:460,1:460:16473:1:36:0,-135.177,-1478.63	0/0:109:108,1:108:3876:1:36:0,-29.214,-345.436	0/0:139:139,0:139:4942:0:0:0,-41.8432,-444.933	0/1:482:240,242:240:8569:242:8621:-630.79,0,-626.11	0/1:426:218,207:218:7751:207:7399:-537.658,0,-569.326	0/0:150:149,1:149:5336:1:32:0,-41.9552,-477.174	0/0:212:212,0:212:7620:0:0:0,-63.8184,-685.833	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:37:19,18:19:684:18:648:-47.5138,0,-50.7522	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:63:30,33:30:1065:33:1184:-87.9034,0,-77.1949	0/0:105:104,1:104:3700:1:36:0,-28.0099,-329.603	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.538	0/0:86:86,0:86:3069:0:0:0,-25.8886,-276.437	0/1:599:308,291:308:11014:291:10389:-754.612,0,-810.836	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.034	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:490:268,222:268:9556:222:7899:-563.412,0,-712.494	0/1:57:27,30:27:972:30:1068:-79.2734,0,-70.6392	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:467:260,206:260:9325:206:7311:-517.402,0,-698.571	0/1:687:325,362:325:11661:362:12917:-955.521,0,-842.533	0/0:121:121,0:121:4294:0:0:0,-36.4246,-386.637	0/1:105:49,56:49:1760:56:2016:-150.105,0,-127.076	0/0:332:331,1:331:11848:1:36:0,-96.3437,-1062.58	0/0:88:85,3:85:3048:3:108:0,-16.4155,-264.474	0/1:107:57,50:57:2052:50:1783:-128.542,0,-152.741	0/0:58:56,2:56:2012:2:72:0,-10.623,-174.516	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:83:32,51:32:1152:51:1832:-140.175,0,-79.0047	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:374:374,0:374:13436:0:0:0,-112.585,-1209.02	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:82:41,41:41:1464:41:1472:-108.092,0,-107.372	0/0:415:414,1:414:14716:1:36:0,-121.329,-1320.58	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:44:30,14:30:1080:14:500:-32.0909,0,-84.2679	0/0:114:114,0:114:4072:0:0:0,-34.3174,-366.668	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:90:90,0:90:3205:0:0:0,-27.0927,-288.672	0/0:80:78,2:78:2804:2:72:0,-17.2457,-245.762	0/0:544:544,0:544:19468:0:0:0,-163.76,-1751.66	0/0:52:52,0:52:1864:0:0:0,-15.6536,-167.182	0/1:42:22,20:22:788:20:703:-50.9509,0,-58.6015	0/0:85:82,3:82:2925:3:108:0,-15.5124,-253.408	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:68:33,35:33:1180:35:1251:-92.4251,0,-86.038	0/0:80:79,1:79:2836:1:36:0,-20.4841,-251.88	0/1:17:5,12:5:180:12:417:-32.7425,0,-11.4346	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:577:576,1:576:20692:1:36:0,-170.096,-1858.16	0/1:1130:546,582:546:19521:582:20866:-1537.57,0,-1416.58	0/1:45:15,30:15:540:30:1080:-83.9669,0,-35.3902	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:43:42,1:42:1512:1:36:0,-9.34601,-132.776
chr02	20463660	.	ATG	GTG,GTA	79610.6	PASS	AB=0.478543,0.519028;ABP=7.9493,6.89433;AC=157,29;AF=0.844086,0.155914;AN=186;AO=3844,644;CIGAR=1X2M,1X1M1X;DP=4491;DPB=4491;DPRA=0,0.897867;EPP=8350.15,1401.44;EPPR=0;GTI=2;LEN=1,3;MEANALT=1.37634,2.09375;MQM=47.7495,29.4752;MQMR=0;NS=93;NUMALT=2;ODDS=1.10997;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=123037,22858;QR=0;RO=0;RPL=3844,644;RPP=8350.15,1401.44;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8350.15,1401.44;SAR=3844,644;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12,0:0:0:12,0:432,0:-39.1797,-3.61236,0,-39.1797,-3.61236,-39.1797	1/1:94:0,94,0:0:0:94,0:3376,0:-303.616,-28.2968,0,-303.616,-28.2968,-303.616	1/1:65:0,65,0:0:0:65,0:2327,0:-209.161,-19.567,0,-209.161,-19.567,-209.161	1/1:55:0,55,0:0:0:55,0:1672,0:-145.589,-16.5567,0,-145.589,-16.5567,-145.589	1/2:48:0,14,34:0:0:14,34:500,1209:-119.141,-78.4859,-74.2715,-40.9919,0,-30.7569	1/2:51:0,31,20:0:0:31,20:1085,715:-135.105,-47.3163,-37.9844,-88.1043,0,-82.0837	1/1:51:0,51,0:0:0:51,0:1648,0:-145.304,-15.3525,0,-145.304,-15.3525,-145.304	1/1:89:0,89,0:0:0:89,0:3188,0:-286.529,-26.7917,0,-286.529,-26.7917,-286.529	1/1:29:0,29,0:0:0:29,0:1029,0:-92.7561,-8.72987,0,-92.7561,-8.72987,-92.7561	1/1:33:0,33,0:0:0:33,0:1029,0:-89.9133,-9.93399,0,-89.9133,-9.93399,-89.9133	1/1:19:0,19,0:0:0:19,0:605,0:-53.3872,-5.71957,0,-53.3872,-5.71957,-53.3872	1/1:30:0,30,0:0:0:30,0:1072,0:-96.6219,-9.0309,0,-96.6219,-9.0309,-96.6219	1/1:39:0,39,0:0:0:39,0:1400,0:-126.06,-11.7402,0,-126.06,-11.7402,-126.06	1/2:35:0,19,16:0:0:19,16:684,576:-93.636,-37.9825,-32.2629,-55.9778,0,-51.1613	1/2:33:0,19,14:0:0:19,14:594,496:-77.3936,-31.276,-25.5564,-46.4071,0,-42.1927	1/2:21:0,7,14:0:0:7,14:252,504:-53.3779,-32.8484,-30.7412,-20.8661,0,-16.6516	1/1:44:0,44,0:0:0:44,0:1573,0:-141.275,-13.2453,0,-141.275,-13.2453,-141.275	1/2:29:0,19,10:0:0:19,10:684,360:-81.558,-26.1429,-20.4234,-55.7482,0,-52.7379	1/1:18:0,18,0:0:0:18,0:629,0:-56.5663,-5.41854,0,-56.5663,-5.41854,-56.5663	1/2:155:0,78,77:0:0:78,77:2069,2734:-305.621,-156.201,-132.721,-149.672,0,-126.493	1/2:51:0,24,27:0:0:24,27:864,946:-136.298,-65.993,-58.7683,-70.6376,0,-62.5098	1/1:69:0,69,0:0:0:69,0:2029,0:-175.014,-20.7711,0,-175.014,-20.7711,-175.014	1/1:10:0,10,0:0:0:10,0:270,0:-22.9295,-3.0103,0,-22.9295,-3.0103,-22.9295	1/2:55:0,30,25:0:0:30,25:1080,894:-147.663,-59.6431,-50.6122,-88.3448,0,-80.8191	1/1:31:0,31,0:0:0:31,0:1116,0:-100.518,-9.33193,0,-100.518,-9.33193,-100.518	1/1:171:0,171,0:0:0:171,0:4765,0:-405.669,-51.4761,0,-405.669,-51.4761,-405.669	1/1:89:0,89,0:0:0:89,0:3169,0:-284.745,-26.7917,0,-284.745,-26.7917,-284.745	1/1:24:0,24,0:0:0:24,0:864,0:-77.9036,-7.22472,0,-77.9036,-7.22472,-77.9036	1/1:126:0,126,0:0:0:126,0:3685,0:-317.548,-37.9298,0,-317.548,-37.9298,-317.548	1/1:79:0,79,0:0:0:79,0:2824,0:-253.815,-23.7814,0,-253.815,-23.7814,-253.815	1/2:54:0,37,15:0:0:37,15:1092,540:-115.816,-33.017,-21.8789,-82.7718,0,-78.2564	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:5:0,5,0:0:0:5,0:180,0:-16.5241,-1.50515,0,-16.5241,-1.50515,-16.5241	1/2:5:0,3,2:0:0:3,2:104,72:-13.074,-4.59672,-3.69363,-8.77978,0,-8.17772	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:91:0,91,0:0:0:91,0:2539,0:-216.599,-27.3937,0,-216.599,-27.3937,-216.599	1/1:124:0,124,0:0:0:124,0:4446,0:-399.429,-37.3277,0,-399.429,-37.3277,-399.429	1/2:31:0,14,17:0:0:14,17:500,599:-82.8867,-42.1599,-37.9455,-41.0609,0,-35.9434	1/2:2:0,1,1:0:0:1,1:36,36:-5.88569,-2.94513,-2.6441,-3.28202,0,-2.98099	1/1:53:0,53,0:0:0:53,0:1891,0:-169.912,-15.9546,0,-169.912,-15.9546,-169.912	1/1:18:0,18,0:0:0:18,0:639,0:-57.7813,-5.41854,0,-57.7813,-5.41854,-57.7813	1/1:54:0,54,0:0:0:54,0:1921,0:-172.371,-16.2556,0,-172.371,-16.2556,-172.371	1/1:17:0,17,0:0:0:17,0:488,0:-42.0193,-5.11751,0,-42.0193,-5.11751,-42.0193	1/2:19:0,7,12:0:0:7,12:207,410:-40.722,-25.0061,-22.8989,-15.9913,0,-12.3789	1/1:33:0,33,0:0:0:33,0:821,0:-67.9157,-9.93399,0,-67.9157,-9.93399,-67.9157	1/2:46:0,20,26:0:0:20,26:711,899:-118.629,-60.7593,-54.7387,-58.1968,0,-50.37	1/1:100:0,100,0:0:0:100,0:2758,0:-233.313,-30.103,0,-233.313,-30.103,-233.313	1/1:83:0,83,0:0:0:83,0:2311,0:-196.296,-24.9855,0,-196.296,-24.9855,-196.296	1/1:76:0,76,0:0:0:76,0:2192,0:-187.856,-22.8783,0,-187.856,-22.8783,-187.856	1/1:118:0,117,1:0:0:117,1:3318,36:-283.38,-35.2205,0,-280.759,-32.2754,-280.458	1/2:16:0,14,2:0:0:14,2:414,72:-36.946,-5.56564,-1.35122,-31.6997,0,-31.0977	1/1:66:0,66,0:0:0:66,0:2364,0:-212.613,-19.868,0,-212.613,-19.868,-212.613	1/1:31:0,31,0:0:0:31,0:884,0:-76.3109,-9.33193,0,-76.3109,-9.33193,-76.3109	1/2:4:0,3,1:0:0:3,1:108,36:-11.7697,-2.94513,-2.04204,-9.15787,0,-8.85684	1/2:48:0,19,29:0:0:19,29:684,1007:-125.354,-69.6842,-63.9647,-56.0054,0,-47.2755	.:.:.:.:.:.:.:.	1/1:5:0,5,0:0:0:5,0:132,0:-11.316,-1.50515,0,-11.316,-1.50515,-11.316	1/2:8:0,1,7:0:0:1,7:36,247:-15.8555,-12.9024,-12.6014,-3.29724,0,-1.19003	1/1:43:0,43,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chr02	20556842	.	A	G	18557.2	PASS	AB=0.526791;ABP=12.6677;AC=29;AF=0.154255;AN=188;AO=828;CIGAR=1X;DP=5007;DPB=5007;DPRA=1.01003;EPP=62.0177;EPPR=143.108;GTI=0;LEN=1;MEANALT=1.02857;MQM=59.9831;MQMR=59.988;NS=94;NUMALT=1;ODDS=2.8546;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29586;QR=148697;RO=4175;RPL=339;RPP=62.0177;RPPR=143.108;RPR=489;RUN=1;SAF=0;SAP=1800.99;SAR=828;SRF=0;SRP=9068.91;SRR=4175;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:43:42,0:42:1477:0:0:0,-12.6433,-133.01	0/0:110:110,0:110:3907:0:0:0,-33.1133,-351.826	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.893	0/1:19:14,5:14:504:5:171:-10.0059,0,-39.9785	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:43:43,0:43:1505:0:0:0,-12.9443,-135.738	0/0:73:72,1:72:2544:1:36:0,-18.3769,-225.612	0/0:65:65,0:65:2253:0:0:0,-19.5669,-203.026	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.977	0/1:76:34,42:34:1216:42:1508:-113.136,0,-86.8683	0/1:36:15,21:15:540:21:750:-56.9888,0,-38.0995	0/1:43:17,26:17:612:26:936:-71.6152,0,-42.4691	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7683	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	0/0:28:27,1:27:968:1:36:0,-4.83056,-83.8391	0/1:45:13,32:13:464:32:1148:-90.0835,0,-28.5512	0/1:48:20,28:20:720:28:1000:-75.8659,0,-50.6793	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:30:11,19:11:396:19:684:-52.8594,0,-26.9518	0/0:31:31,0:31:1091:0:0:0,-9.33193,-98.4987	0/0:154:154,0:154:5496:0:0:0,-46.3586,-494.738	0/0:169:168,0:168:6013:0:0:0,-50.573,-540.913	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.103	0/0:73:73,0:73:2592:0:0:0,-21.9752,-233.53	0/1:122:61,61:61:2180:61:2184:-160.1,0,-159.712	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:5,2:5:167:2:72:-4.72951,0,-13.2512	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:157:157,0:157:5628:0:0:0,-47.2617,-506.64	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:54:22,32:22:780:32:1139:-86.5628,0,-54.2674	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:86:86,0:86:3049:0:0:0,-25.8886,-274.64	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/1:44:16,28:16:564:28:1008:-77.791,0,-37.845	0/0:38:37,0:37:1301:0:0:0,-11.1381,-117.137	0/1:59:28,31:28:1004:31:1112:-82.6306,0,-72.9151	0/0:58:53,5:53:1900:5:176:0,-1.27472,-155.093	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/0:75:72,3:72:2555:3:108:0,-12.5021,-220.126	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.361	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.392	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:157:84,72:84:2990:72:2567:-183.959,0,-222.011	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:5:2,3:2:64:3:108:-8.57002,0,-4.57354	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/1:113:46,67:46:1648:67:2400:-182.24,0,-114.592	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:80:34,46:34:1216:46:1643:-124.075,0,-85.6642	0/0:32:31,1:31:1108:1:32:0,-6.43365,-96.8317	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:35:21,14:21:756:14:504:-35.162,0,-57.8312	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:48:48,0:48:1684:0:0:0,-14.4494,-151.844	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7228	0/1:48:24,24:24:860:24:847:-62.0985,0,-63.2724	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:96:96,0:96:3433:0:0:0,-28.8989,-309.182	0/1:45:22,23:22:783:23:828:-61.2978,0,-57.2466	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:80:80,0:80:2822:0:0:0,-24.0824,-254.218	0/0:61:60,1:60:2115:1:36:0,-14.7646,-187.021	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:89:49,40:49:1744:40:1422:-101.484,0,-130.453	0/0:93:93,0:93:3324:0:0:0,-27.9958,-299.378	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.393	0/1:25:17,8:17:595:8:287:-18.6507,0,-46.3509	0/0:87:87,0:87:3119:0:0:0,-26.1896,-280.936	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.382	0/0:50:50,0:50:1764:0:0:0,-15.0515,-159.041	0/0:66:66,0:66:2343:0:0:0,-19.868,-211.129	0/1:215:105,110:105:3742:110:3904:-286.83,0,-272.259	0/1:56:20,36:20:697:36:1292:-99.717,0,-46.193	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943
chr02	20556851	.	C	A	13715.3	PASS	AB=0.517549;ABP=7.2022;AC=29;AF=0.154255;AN=188;AO=825;CIGAR=1X;DP=5102;DPB=5102;DPRA=0.952497;EPP=1768.51;EPPR=9205.87;GTI=0;LEN=1;MEANALT=1.02632;MQM=59.9685;MQMR=59.9913;NS=94;NUMALT=1;ODDS=2.95556;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29388;QR=152585;RO=4274;RPL=822;RPP=1768.51;RPPR=9205.87;RPR=3;RUN=1;SAF=0;SAP=1794.48;SAR=825;SRF=0;SRP=9283.88;SRR=4274;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.309	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.746	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2796	0/1:25:14,11:14:500:11:392:-28.0943,0,-37.8104	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:47:46,0:46:1656:0:0:0,-13.8474,-148.969	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:45:45,0:45:1592:0:0:0,-13.5463,-143.568	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/0:74:74,0:74:2621:0:0:0,-22.2762,-236.137	0/1:75:33,42:33:1167:42:1500:-112.717,0,-82.7592	0/1:36:15,21:15:540:21:748:-56.8082,0,-38.0995	0/1:42:17,25:17:608:25:896:-68.3171,0,-42.4088	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:47:14,33:14:504:33:1176:-91.9994,0,-31.5497	0/1:49:20,29:20:716:29:1035:-78.7126,0,-50.0172	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:59:59,0:59:2106:0:0:0,-17.7608,-189.808	0/1:32:12,20:12:432:20:716:-55.1348,0,-29.5882	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:158:158,0:158:5599:0:0:0,-47.5627,-504.022	0/0:180:180,0:180:6435:0:0:0,-54.1854,-579.238	0/0:21:20,1:20:720:1:36:0,-2.72335,-61.5305	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:74:74,0:74:2637:0:0:0,-22.2762,-237.576	0/1:121:62,59:62:2201:59:2108:-153.565,0,-161.929	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:155:155,0:155:5559:0:0:0,-46.6596,-500.432	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:54:24,30:24:856:30:1080:-81.2576,0,-61.1055	0/0:2:1,0:1:36:0:0:0,-0.30103,-3.23845	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:37:36,1:36:1284:1:36:0,-7.53983,-112.265	0/1:43:16,27:16:560:27:960:-73.7714,0,-37.7845	0/0:39:38,1:38:1352:1:36:0,-8.14189,-118.382	0/1:61:29,32:29:1040:32:1134:-84.0044,0,-75.5515	0/0:57:52,5:52:1835:5:180:0,-0.606645,-148.875	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:77:75,2:75:2654:2:72:0,-16.3426,-232.267	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/1:10:6,4:6:212:4:140:-9.93428,0,-16.4145	0/0:105:105,0:105:3747:0:0:0,-31.6081,-337.431	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:163:89,73:89:3177:73:2604:-185.482,0,-237.026	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:60:60,0:60:2110:0:0:0,-18.0618,-190.166	0/1:115:49,66:49:1760:66:2352:-177.32,0,-124.065	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/1:83:34,49:34:1224:49:1752:-132.979,0,-85.4816	0/0:34:33,1:33:1180:1:36:0,-6.63674,-102.91	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:34:21,13:21:748:13:460:-31.5004,0,-57.4103	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.07	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.916	0/1:49:26,23:26:928:23:811:-58.5595,0,-69.0878	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/1:46:23,23:23:819:23:820:-60.2751,0,-60.1842	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.174	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/0:83:83,0:83:2958:0:0:0,-24.9855,-266.453	0/0:59:58,1:58:2062:1:36:0,-14.1625,-182.252	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:54:53,1:53:1889:1:36:0,-12.6573,-166.688	0/1:91:50,41:50:1796:41:1442:-102.681,0,-134.529	0/0:94:94,0:94:3353:0:0:0,-28.2968,-301.986	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:26:18,8:18:644:8:288:-18.4406,0,-50.4638	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/0:58:57,1:57:2044:1:23:0,-15.1809,-181.953	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.292	0/1:216:107,109:107:3832:109:3880:-284.372,0,-280.054	0/1:54:21,33:21:752:33:1167:-89.0808,0,-51.7506	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78
chr02	20559600	.	G	A	10341.9	PASS	AB=0.475979;ABP=9.79114;AC=29;AF=0.157609;AN=184;AO=647;CIGAR=1X;DP=5187;DPB=5187;DPRA=0.836854;EPP=1407.95;EPPR=9850.64;GTI=1;LEN=1;MEANALT=1;MQM=59.864;MQMR=59.9863;NS=92;NUMALT=1;ODDS=1.01082;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23064;QR=161148;RO=4539;RPL=0;RPP=1407.95;RPPR=9850.64;RPR=647;RUN=1;SAF=0;SAP=1407.95;SAR=647;SRF=0;SRP=9859.32;SRR=4539;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:86:86,0:86:3052:0:0:0,-25.8886,-274.909	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/1:34:15,19:15:536:19:684:-51.6553,0,-38.3398	0/1:32:14,18:14:504:18:640:-47.804,0,-36.0651	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.993	0/0:61:61,0:61:2164:0:0:0,-18.3628,-195.025	0/0:42:42,0:42:1462:0:0:0,-12.6433,-131.87	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/0:38:38,0:38:1329:0:0:0,-11.4391,-119.907	0/0:38:38,0:38:1317:0:0:0,-11.4391,-118.825	0/1:39:21,18:21:748:18:631:-45.3755,0,-55.9051	0/1:46:24,22:24:844:22:792:-57.7583,0,-62.4315	0/1:30:15,15:15:536:15:536:-39.5439,0,-39.5439	0/0:40:40,0:40:1414:0:0:0,-12.0412,-127.556	0/1:34:22,12:22:779:12:428:-28.6238,0,-60.197	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:115:64,51:64:2296:51:1824:-129.822,0,-172.283	0/1:74:43,31:43:1510:31:1116:-78.4755,0,-113.913	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.593	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.74	0/1:72:36,36:36:1292:36:1266:-92.5665,0,-94.9096	0/0:27:27,0:27:941:0:0:0,-8.12781,-85.0017	0/0:165:165,0:165:5858:0:0:0,-49.6699,-527.274	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/0:19:19,0:19:656:0:0:0,-5.71957,-59.3594	0/0:119:119,0:119:4207:0:0:0,-35.8226,-378.754	0/0:140:140,0:140:5012:0:0:0,-42.1442,-451.227	0/1:81:35,46:35:1237:46:1656:-124.841,0,-87.2489	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:143:143,0:143:5029:0:0:0,-43.0473,-452.76	0/0:100:100,0:100:3508:0:0:0,-30.103,-315.929	0/1:28:13,15:13:460:15:540:-40.5077,0,-33.3065	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/0:78:78,0:78:2772:0:0:0,-23.4803,-249.72	0/0:49:49,0:49:1721:0:0:0,-14.7505,-155.173	0/1:43:20,23:20:672:23:815:-60.7265,0,-47.8462	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:52:32,20:32:1135:20:702:-47.8489,0,-86.8045	0/0:128:128,0:128:4553:0:0:0,-38.5318,-409.937	0/0:69:69,0:69:2435:0:0:0,-20.7711,-219.401	0/0:114:114,0:114:4077:0:0:0,-34.3174,-367.115	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/1:43:17,26:17:595:26:936:-71.6152,0,-40.9324	0/0:29:29,0:29:1016:0:0:0,-8.72987,-91.749	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:38:38,0:38:1342:0:0:0,-11.4391,-121.079	0/1:77:40,37:40:1421:37:1313:-95.288,0,-105.006	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:145:145,0:145:5169:0:0:0,-43.6493,-465.351	0/1:105:67,38:67:2388:38:1336:-88.929,0,-183.57	0/0:57:57,0:57:2022:0:0:0,-17.1587,-182.252	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:86:44,42:44:1566:42:1508:-110.126,0,-115.342	0/0:62:61,1:61:2175:1:36:0,-15.0656,-192.418	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:60:28,32:28:983:32:1140:-84.8474,0,-70.7207	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:68:68,0:68:2407:0:0:0,-20.47,-216.887	0/1:57:40,17:40:1390:17:612:-38.2547,0,-108.234	0/0:45:45,0:45:1577:0:0:0,-13.5463,-142.216	0/0:130:130,0:130:4646:0:0:0,-39.1339,-418.302	0/0:61:60,0:60:2139:0:0:0,-18.0618,-192.418	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/1:52:26,26:26:917:26:913:-66.8304,0,-67.191	0/0:102:102,0:102:3635:0:0:0,-30.7051,-327.356	0/0:79:78,1:78:2764:1:36:0,-20.1831,-245.405	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:47:23,24:23:816:24:856:-63.1263,0,-59.6133	0/0:73:73,0:73:2524:0:0:0,-21.9752,-227.408	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.0815	0/0:58:58,0:58:2055:0:0:0,-17.4597,-185.221	0/0:56:56,0:56:1979:0:0:0,-16.8577,-178.381	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/1:41:22,19:22:784:19:684:-49.5481,0,-58.3511	0/1:46:14,32:14:486:32:1136:-88.7015,0,-30.2206	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:71:71,0:71:2518:0:0:0,-21.3731,-226.872
chr02	20559629	.	G	A	10543.1	PASS	AB=0.479321;ABP=8.03965;AC=29;AF=0.157609;AN=184;AO=651;CIGAR=1X;DP=5225;DPB=5225;DPRA=0.809163;EPP=1416.64;EPPR=9926.64;GTI=1;LEN=1;MEANALT=1.06897;MQM=59.874;MQMR=59.9867;NS=92;NUMALT=1;ODDS=2.71007;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23306;QR=162801;RO=4570;RPL=651;RPP=1416.64;RPPR=9926.64;RPR=0;RUN=1;SAF=0;SAP=1416.64;SAR=651;SRF=0;SRP=9926.64;SRR=4570;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/0:86:86,0:86:3067:0:0:0,-25.8886,-276.259	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/0:98:98,0:98:3484:0:0:0,-29.5009,-313.773	0/1:34:15,19:15:540:19:675:-50.8419,0,-38.7015	0/1:33:14,19:14:500:19:680:-51.1029,0,-35.4022	0/0:76:76,0:76:2704:0:0:0,-22.8783,-243.603	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:69:69,0:69:2445:0:0:0,-20.7711,-220.304	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.61	0/0:41:41,0:41:1443:0:0:0,-12.3422,-130.165	0/1:37:20,17:20:716:17:612:-44.2753,0,-53.6296	0/1:46:23,23:23:816:23:824:-60.6359,0,-59.9143	0/1:28:14,14:14:496:14:504:-37.2693,0,-36.5454	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:35:21,14:21:756:14:500:-34.8001,0,-57.8312	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:113:64,49:64:2288:49:1749:-123.676,0,-172.165	0/1:74:43,31:43:1528:31:1116:-78.4755,0,-115.537	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:66:66,0:66:2329:0:0:0,-19.868,-209.869	0/1:72:37,35:37:1324:35:1252:-91.3109,0,-97.7879	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:171:171,0:171:6108:0:0:0,-51.4761,-549.693	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:118:118,0:118:4184:0:0:0,-35.5215,-376.685	0/0:139:139,0:139:4951:0:0:0,-41.8432,-445.742	0/1:83:35,47:35:1252:47:1684:-126.748,0,-87.9409	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:143:143,0:143:5077:0:0:0,-43.0473,-457.077	0/0:98:98,0:98:3492:0:0:0,-29.5009,-314.492	0/1:28:13,15:13:456:15:540:-40.5077,0,-32.9444	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.887	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/0:48:48,0:48:1689:0:0:0,-14.4494,-152.294	0/1:43:20,23:20:707:23:824:-61.539,0,-51.0103	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/1:53:32,21:32:1124:21:752:-52.0517,0,-85.5134	0/0:130:130,0:130:4636:0:0:0,-39.1339,-417.405	0/0:71:71,0:71:2514:0:0:0,-21.3731,-226.512	0/0:114:114,0:114:4069:0:0:0,-34.3174,-366.396	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.141	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:43:17,26:17:595:26:928:-70.894,0,-40.9324	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:39:39,0:39:1379:0:0:0,-11.7402,-124.408	0/1:80:40,40:40:1418:40:1436:-105.453,0,-103.833	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:149:149,0:149:5312:0:0:0,-44.8535,-478.217	0/1:104:66,38:66:2364:38:1360:-91.3935,0,-181.711	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:88:45,43:45:1616:43:1544:-112.762,0,-119.239	0/0:63:62,1:62:2213:1:36:0,-15.3666,-195.835	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:60:28,31:28:996:31:1108:-81.9105,0,-71.8344	0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4406	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.924	0/1:58:40,18:40:1420:18:644:-40.8309,0,-110.638	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:130:130,0:130:4631:0:0:0,-39.1339,-416.955	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.149	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/1:50:26,24:26:908:24:852:-61.9489,0,-66.981	0/0:102:101,0:101:3612:0:0:0,-30.404,-324.926	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.945	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:47:23,24:23:815:24:854:-63.0218,0,-59.5224	0/0:71:71,0:71:2508:0:0:0,-21.3731,-225.974	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:56:56,0:56:1990:0:0:0,-16.8577,-179.373	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/1:39:21,18:21:752:18:644:-46.5504,0,-56.2661	0/1:47:14,33:14:469:33:1180:-92.3596,0,-28.3807	0/0:64:63,0:63:2252:0:0:0,-18.9649,-202.572	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.682
chr02	20642315	.	ATTTG	TTTTG,TTTTC	163174	PASS	AB=0.389732,0.608929;ABP=239.581,233.869;AC=158,30;AF=0.840426,0.159574;AN=188;AO=6032,1383;CIGAR=1X4M,1X3M1X;DP=7431;DPB=7431.2;DPRA=0,1.02767;EPP=13101.3,3006.16;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=1.56383,2.15789;MQM=59.9649,59.9205;MQMR=60;NS=94;NUMALT=2;ODDS=1.19458;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=215731,48451;QR=35;RO=1;RPL=0,0;RPP=13101.3,3006.16;RPPR=5.18177;RPR=6032,1383;RUN=1,1;SAF=0,0;SAP=13101.3,3006.16;SAR=6032,1383;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,56,0:0:0:56,0:1982,0:-178.651,-16.8577,0,-178.651,-16.8577,-178.651	1/1:48:0,48,0:0:0:48,0:1720,0:-155.085,-14.4494,0,-155.085,-14.4494,-155.085	1/1:134:0,134,0:0:0:134,0:4739,0:-426.667,-40.338,0,-426.667,-40.338,-426.667	1/1:183:0,183,0:0:0:183,0:6534,0:-588.112,-55.0885,0,-588.112,-55.0885,-588.112	1/2:56:0,10,46:0:0:10,46:341,1635:-161.256,-133.592,-130.581,-28.0075,0,-14.1601	1/2:45:0,19,26:0:0:19,26:684,931:-132.094,-76.2822,-70.5626,-56.1708,0,-48.344	1/1:145:0,145,0:0:0:145,0:5182,0:-466.517,-43.6494,0,-466.517,-43.6494,-466.517	1/1:74:0,73,1:0:0:73,1:2609,34:-234.717,-21.9752,0,-231.959,-18.8773,-231.658	1/1:81:0,81,0:0:0:81,0:2878,0:-259.254,-24.3834,0,-259.254,-24.3834,-259.254	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/1:79:0,79,0:0:0:79,0:2821,0:-254.128,-23.7814,0,-254.128,-23.7814,-254.128	1/1:67:0,67,0:0:0:67,0:2404,0:-216.616,-20.169,0,-216.616,-20.169,-216.616	1/1:58:0,58,0:0:0:58,0:2080,0:-187.47,-17.4597,0,-187.47,-17.4597,-187.47	1/2:117:0,55,62:0:0:55,62:1957,2178:-337.111,-177.617,-161.061,-159.847,0,-141.183	1/2:48:0,18,30:0:0:18,30:648,1036:-137.124,-84.2451,-78.8266,-53.2333,0,-44.2024	1/2:67:0,29,38:0:0:29,38:1044,1312:-192.13,-106.938,-98.2082,-85.5449,0,-74.1058	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/2:19:0,7,12:0:0:7,12:244,424:-54.7267,-34.8846,-32.7774,-20.1922,0,-16.5799	1/1:35:0,35,0:0:0:35,0:1256,0:-113.345,-10.5361,0,-113.345,-10.5361,-113.345	1/2:111:0,26,85:0:0:26,85:921,2973:-317.244,-242.219,-234.392,-75.3784,0,-49.7909	1/2:282:0,117,165:0:0:117,165:4174,5782:-811.092,-470.832,-435.612,-340.614,0,-290.944	1/1:104:0,103,0:0:0:103,0:3650,0:-328.453,-31.0061,0,-328.453,-31.0061,-328.453	1/1:79:1,77,0:1:35:77,0:2768,0:-245.891,-20.3016,0,-246.192,-23.1793,-249.04	1/2:31:0,9,22:0:0:9,22:320,757:-87.9059,-61.8249,-59.1156,-26.4331,0,-19.8104	1/1:49:0,49,0:0:0:49,0:1760,0:-158.684,-14.7505,0,-158.684,-14.7505,-158.684	1/1:136:0,136,0:0:0:136,0:4864,0:-437.911,-40.9401,0,-437.911,-40.9401,-437.911	1/1:197:0,197,0:0:0:197,0:7028,0:-632.175,-59.3029,0,-632.175,-59.3029,-632.175	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:123:0,123,0:0:0:123,0:4412,0:-397.249,-37.0267,0,-397.249,-37.0267,-397.249	1/1:150:0,150,0:0:0:150,0:5364,0:-482.89,-45.1545,0,-482.89,-45.1545,-482.89	1/2:175:0,81,94:0:0:81,94:2916,3307:-507.492,-269.558,-245.174,-238.291,0,-209.994	1/1:24:0,24,0:0:0:24,0:852,0:-77.0004,-7.22472,0,-77.0004,-7.22472,-77.0004	1/1:45:0,45,0:0:0:45,0:1605,0:-144.738,-13.5464,0,-144.738,-13.5464,-144.738	1/1:17:0,17,0:0:0:17,0:612,0:-55.4101,-5.11751,0,-55.4101,-5.11751,-55.4101	1/2:25:0,13,12:0:0:13,12:468,424:-73.074,-34.8841,-30.9708,-38.5463,0,-34.9339	1/1:31:0,31,0:0:0:31,0:1112,0:-100.39,-9.33193,0,-100.39,-9.33193,-100.39	1/1:125:0,124,0:0:0:124,0:4452,0:-400.559,-37.3277,0,-400.559,-37.3277,-400.559	1/1:135:0,133,0:0:0:133,0:4738,0:-426.267,-40.037,0,-426.267,-40.037,-426.267	1/2:69:0,24,44:0:0:24,44:860,1540:-195.428,-125.286,-118.061,-70.1374,0,-56.892	1/2:13:0,5,8:0:0:5,8:180,282:-38.0034,-23.3134,-21.8083,-15.0469,0,-12.6387	1/1:93:0,93,0:0:0:93,0:3323,0:-299.017,-27.9958,0,-299.017,-27.9958,-299.017	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:162:0,162,0:0:0:162,0:5771,0:-519.501,-48.7669,0,-519.501,-48.7669,-519.501	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/2:36:0,13,23:0:0:13,23:464,800:-103.225,-65.3942,-61.4808,-38.1841,0,-31.2604	1/1:48:0,48,0:0:0:48,0:1728,0:-155.805,-14.4494,0,-155.805,-14.4494,-155.805	1/2:108:0,46,61:0:0:46,61:1629,2156:-308.282,-175.586,-161.739,-132.69,0,-114.327	1/1:134:0,129,5:0:0:129,5:4617,179:-415.334,-38.8329,0,-400.737,-23.8776,-399.231	1/1:67:0,67,0:0:0:67,0:2408,0:-216.976,-20.169,0,-216.976,-20.169,-216.976	1/1:84:0,84,0:0:0:84,0:3016,0:-271.67,-25.2865,0,-271.67,-25.2865,-271.67	1/1:51:0,51,0:0:0:51,0:1832,0:-165.161,-15.3525,0,-165.161,-15.3525,-165.161	1/2:28:0,5,23:0:0:5,23:180,806:-80.6252,-65.9364,-64.4312,-15.0469,0,-8.12322	1/1:105:0,105,0:0:0:105,0:3756,0:-338.24,-31.6082,0,-338.24,-31.6082,-338.24	1/1:54:0,54,0:0:0:54,0:1932,0:-174.156,-16.2556,0,-174.156,-16.2556,-174.156	1/2:9:0,3,6:0:0:3,6:108,214:-26.615,-17.8016,-16.8986,-9.17208,0,-7.3659	1/2:84:0,30,54:0:0:30,54:1076,1880:-240.99,-153.223,-144.192,-88.122,0,-71.8663	1/1:47:0,46,1:0:0:46,1:1648,36:-148.249,-13.8474,0,-145.311,-10.5501,-145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chr02	20642328	.	T	G	128190	PASS	AB=0.387681;ABP=244.956;AC=158;AF=0.840426;AN=188;AO=5957;CIGAR=1X;DP=7331;DPB=7331;DPRA=0;EPP=12938.5;EPPR=2964.92;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9577;MQMR=59.9716;NS=94;NUMALT=1;ODDS=1.14465;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210566;QR=49206;RO=1372;RPL=0;RPP=12938.5;RPPR=2964.92;RPR=5957;RUN=1;SAF=0;SAP=12938.5;SAR=5957;SRF=0;SRP=2982.27;SRR=1372;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:47:0,47:0:0:47:1650:-148.784,-14.1484,0	1/1:133:0,132:0:0:132:4657:-418.938,-39.736,0	1/1:180:0,180:0:0:180:6368:-573.188,-54.1854,0	0/1:54:44,10:44:1584:10:351:-15.6711,0,-126.596	0/1:45:26,19:26:932:19:665:-46.6264,0,-70.6525	1/1:143:0,143:0:0:143:5018:-451.772,-43.0473,0	1/1:71:1,70:1:36:70:2467:-218.685,-17.7749,0	1/1:78:0,78:0:0:78:2751:-247.831,-23.4803,0	1/1:41:0,41:0:0:41:1453:-131.064,-12.3422,0	1/1:78:0,78:0:0:78:2747:-247.471,-23.4803,0	1/1:67:0,67:0:0:67:2303:-207.528,-20.169,0	1/1:58:0,58:0:0:58:2053:-185.041,-17.4597,0	0/1:118:64,54:64:2296:54:1913:-136.925,0,-171.367	0/1:47:29,17:29:1044:17:612:-41.2062,0,-80.0676	0/1:65:37,28:37:1324:28:991:-69.9366,0,-99.8951	1/1:35:1,34:1:36:34:1173:-102.271,-6.93778,0	0/1:19:12,7:12:432:7:248:-16.9446,0,-33.5016	1/1:34:0,34:0:0:34:1180:-106.502,-10.235,0	0/1:110:84,26:84:3012:26:932:-51.0856,0,-238.197	0/1:280:165,115:165:5915:115:4056:-280.937,0,-448.163	1/1:100:0,100:0:0:100:3559:-320.519,-30.103,0	1/1:79:0,79:0:0:79:2799:-252.149,-23.7814,0	0/1:29:22,7:22:792:7:248:-13.9343,0,-62.8758	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:134:0,134:0:0:134:4748:-427.48,-40.338,0	1/1:193:0,193:0:0:193:6822:-613.863,-58.0988,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:121:0,121:0:0:121:4300:-387.178,-36.4246,0	1/1:145:0,145:0:0:145:5142:-462.915,-43.6494,0	0/1:172:94,78:94:3372:78:2765:-197.314,0,-251.918	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:40:0,40:0:0:40:1421:-128.186,-12.0412,0	1/1:17:0,17:0:0:17:612:-55.4101,-5.11751,0	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	1/1:30:0,30:0:0:30:1041:-93.9974,-9.0309,0	1/1:125:0,125:0:0:125:4403:-396.444,-37.6288,0	1/1:133:0,133:0:0:133:4684:-421.708,-40.037,0	0/1:68:45,23:45:1616:23:810:-52.749,0,-125.26	0/1:13:8,5:8:284:5:176:-12.2716,0,-21.99	1/1:93:0,93:0:0:93:3228:-290.651,-27.9958,0	1/1:31:0,31:0:0:31:1071:-96.6942,-9.33193,0	1/1:161:0,161:0:0:161:5716:-514.517,-48.4658,0	1/1:26:0,26:0:0:26:921:-83.2068,-7.82678,0	0/1:36:23,13:23:824:13:456:-30.5362,0,-63.6462	1/1:49:0,49:0:0:49:1719:-154.992,-14.7505,0	0/1:108:61,47:61:2192:47:1650:-116.273,0,-165.034	1/1:131:5,126:5:180:126:4420:-381.421,-22.8829,0	1/1:66:0,66:0:0:66:2355:-212.208,-19.868,0	1/1:84:1,83:1:36:83:2954:-262.495,-21.6882,0	1/1:50:0,50:0:0:50:1761:-158.773,-15.0515,0	0/1:26:21,5:21:752:5:172:-7.99119,0,-60.1795	1/1:105:0,105:0:0:105:3712:-334.281,-31.6082,0	1/1:54:0,54:0:0:54:1915:-172.627,-16.2556,0	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/1:82:53,29:53:1900:29:1031:-68.4182,0,-146.593	1/1:47:1,46:1:36:46:1639:-144.2,-10.5501,0	0/1:23:17,6:17:612:6:212:-12.5011,0,-48.4897	0/1:37:22,15:22:792:15:523:-36.2603,0,-60.4676	1/1:57:0,57:0:0:57:2034:-183.326,-17.1587,0	0/1:86:49,37:49:1760:37:1307:-92.0422,0,-132.795	1/1:7:0,7:0:0:7:240:-21.9347,-2.10721,0	1/1:148:0,148:0:0:148:5223:-470.211,-44.5524,0	0/1:141:89,52:89:3200:52:1855:-124.784,0,-245.777	1/1:38:1,37:1:36:37:1296:-113.34,-7.84087,0	1/1:57:0,57:0:0:57:2035:-183.051,-17.1587,0	0/1:172:107,65:107:3827:65:2285:-154.132,0,-292.849	1/1:206:5,201:5:180:201:7199:-631.407,-45.4601,0	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:65:0,65:0:0:65:2288:-206.18,-19.567,0	0/1:50:25,25:25:900:25:885:-64.915,0,-66.2695	1/1:18:0,18:0:0:18:627:-56.7529,-5.41854,0	1/1:161:0,161:0:0:161:5660:-509.521,-48.4658,0	0/1:72:38,34:38:1352:34:1199:-86.5406,0,-100.302	1/1:229:0,229:0:0:229:8143:-732.887,-68.9359,0	1/1:115:0,115:0:0:115:4045:-364.24,-34.6185,0	1/1:79:2,77:2:72:77:2741:-240.095,-16.9446,0	1/1:86:3,83:3:108:83:2930:-253.858,-15.8134,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	0/1:68:45,23:45:1616:23:812:-52.9309,0,-125.26	1/1:147:1,146:1:36:146:5187:-463.371,-40.6531,0	1/1:42:0,42:0:0:42:1477:-133.222,-12.6433,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:26:17,9:17:604:9:320:-21.3156,0,-46.8638	1/1:85:0,85:0:0:85:2956:-266.27,-25.5876,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	1/1:49:0,49:0:0:49:1721:-155.173,-14.7505,0	1/1:59:0,59:0:0:59:2093:-188.638,-17.7608,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:161:86,75:86:3076:75:2613:-186.949,0,-228.597	0/1:51:39,12:39:1400:12:432:-23.8687,0,-110.947	1/1:83:0,83:0:0:83:2922:-263.214,-24.9855,0	1/1:55:0,55:0:0:55:1928:-173.793,-16.5567,0
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chr02	20645598	.	TT	TC	170551	PASS	AB=0.485048;ABP=7.42582;AC=158;AF=0.840426;AN=188;AO=8167;CIGAR=1M1X;DP=9367;DPB=9367;DPRA=0;EPP=17564.1;EPPR=2539.32;GTI=2;LEN=1;MEANALT=1.15957;MQM=40.9955;MQMR=40.4192;NS=94;NUMALT=1;ODDS=0.660086;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=291842;QR=41799;RO=1176;RPL=8147;RPP=17564.1;RPPR=2539.32;RPR=20;RUN=1;SAF=0;SAP=17737.4;SAR=8167;SRF=0;SRP=2556.66;SRR=1176;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:73:0,73:0:0:73:2624:-216.636,-21.9752,0	1/1:61:0,60:0:0:60:2145:-178.05,-18.0618,0	1/1:199:0,198:0:0:198:7073:-589.33,-59.6039,0	1/1:248:0,248:0:0:248:8853:-780.07,-74.6554,0	0/1:32:12,20:12:421:20:720:-50.9323,0,-26.0474	0/1:43:22,21:22:745:21:756:-50.5789,0,-50.4906	1/1:86:0,85:0:0:85:3052:-267.829,-25.5876,0	1/1:162:0,162:0:0:162:5800:-484.025,-48.7669,0	1/1:116:0,108:0:0:108:3863:-320.561,-32.5112,0	1/1:75:0,75:0:0:75:2668:-235.494,-22.5773,0	1/1:41:0,40:0:0:40:1440:-127.097,-12.0412,0	1/1:81:0,81:0:0:81:2896:-240.129,-24.3834,0	1/1:66:0,66:0:0:66:2362:-195.937,-19.868,0	0/1:48:28,20:28:1008:20:716:-45.9822,0,-68.7655	0/1:68:37,31:37:1321:31:1108:-76.9506,0,-96.106	0/1:58:32,25:32:1148:25:900:-58.159,0,-77.7678	1/1:37:0,37:0:0:37:1328:-111.731,-11.1381,0	0/1:17:7,10:7:250:10:360:-25.3324,0,-15.3674	1/1:31:0,31:0:0:31:1116:-93.2353,-9.33193,0	0/1:122:58,64:58:2058:64:2294:-165.451,0,-144.624	0/1:152:67,85:67:2392:85:3036:-207.739,0,-152.523	1/1:158:0,158:0:0:158:5668:-504.574,-47.5627,0	1/1:105:0,105:0:0:105:3760:-332.336,-31.6082,0	0/1:39:20,19:20:690:19:671:-45.0912,0,-46.4092	1/1:140:0,140:0:0:140:5020:-417.842,-42.1442,0	1/1:258:0,258:0:0:258:9211:-817.67,-77.6657,0	1/1:306:0,306:0:0:306:10976:-909.604,-92.1152,0	1/1:41:0,41:0:0:41:1472:-122.67,-12.3422,0	1/1:338:0,337:0:0:337:11986:-1063.32,-101.447,0	1/1:126:0,126:0:0:126:4490:-370.645,-37.9298,0	0/1:170:88,82:88:3128:82:2937:-208.27,0,-224.084	1/1:7:0,7:0:0:7:252:-21.4153,-2.10721,0	1/1:20:0,20:0:0:20:720:-60.6353,-6.0206,0	1/1:3:0,3:0:0:3:108:-9.36921,-0.90309,0	0/1:24:15,9:15:522:9:324:-19.4359,0,-36.6406	1/1:10:0,10:0:0:10:356:-30.2461,-3.0103,0	1/1:212:0,212:0:0:212:7596:-673.598,-63.8184,0	1/1:152:0,152:0:0:152:5436:-453.769,-45.7566,0	0/1:53:30,23:30:1069:23:824:-53.5453,0,-74.1476	0/1:2:1,1:1:36:1:36:-2.74409,0,-2.74409	1/1:141:0,141:0:0:141:5018:-418.643,-42.4452,0	1/1:25:0,25:0:0:25:878:-73.2608,-7.52575,0	1/1:193:1,192:1:36:192:6814:-561.713,-54.7526,0	1/1:64:0,63:0:0:63:2264:-199.625,-18.9649,0	0/1:57:29,28:29:1031:28:1000:-70.875,0,-74.0013	1/1:143:0,142:0:0:142:5065:-448.554,-42.7463,0	0/1:145:73,70:73:2579:70:2484:-164.88,0,-171.571	1/1:214:0,214:0:0:214:7631:-671.249,-64.4204,0	1/1:93:0,93:0:0:93:3318:-293.042,-27.9958,0	1/1:137:0,137:0:0:137:4873:-429.001,-41.2411,0	1/1:129:0,129:0:0:129:4628:-408.732,-38.8329,0	0/1:21:13,8:13:468:8:288:-19.5825,0,-34.5912	1/1:177:0,177:0:0:177:6328:-527.333,-53.2823,0	1/1:52:0,50:0:0:50:1796:-160.046,-15.0515,0	0/1:5:3,2:3:108:2:72:-4.85253,0,-7.86406	0/1:172:95,77:95:3400:77:2764:-178.418,0,-230.007	1/1:59:0,59:0:0:59:2116:-186.212,-17.7608,0	0/1:24:13,11:13:468:11:387:-27.0935,0,-34.6634	0/1:23:13,10:13:468:10:360:-25.3546,0,-34.282	1/1:108:1,107:1:36:107:3831:-317.563,-28.9248,0	0/1:124:66,58:66:2365:58:2074:-145.594,0,-171.508	1/1:11:0,11:0:0:11:392:-35.0599,-3.31133,0	1/1:234:1,232:1:36:232:8304:-734.391,-66.9299,0	0/1:187:82,105:82:2906:105:3764:-276.77,0,-200.877	1/1:58:0,58:0:0:58:2076:-173.548,-17.4597,0	1/1:115:0,115:0:0:115:4103:-363.106,-34.6185,0	0/1:173:81,92:81:2895:92:3285:-237.359,0,-203.743	1/1:140:1,138:1:36:138:4936:-429.432,-38.5931,0	1/1:38:0,38:0:0:38:1349:-113.399,-11.4391,0	1/1:71:0,71:0:0:71:2544:-212.595,-21.3731,0	0/1:39:25,14:25:887:14:504:-33.5583,0,-65.6265	1/1:22:0,22:0:0:22:779:-69.4057,-6.62266,0	1/1:165:0,165:0:0:165:5887:-485.773,-49.67,0	0/1:90:42,48:42:1500:48:1686:-114.879,0,-99.0174	1/1:163:0,163:0:0:163:5780:-480.303,-49.0679,0	1/1:134:0,134:0:0:134:4767:-420.049,-40.338,0	1/1:158:0,158:0:0:158:5645:-469.132,-47.5627,0	1/1:88:0,88:0:0:88:3137:-262.563,-26.4906,0	1/1:20:0,20:0:0:20:720:-60.7054,-6.0206,0	1/1:87:0,87:0:0:87:3116:-259.853,-26.1896,0	0/1:114:64,50:64:2266:50:1791:-114.007,0,-156.201	1/1:212:3,208:3:108:208:7407:-641.939,-53.9363,0	1/1:59:0,59:0:0:59:2112:-185.62,-17.7608,0	1/1:51:1,50:1:36:50:1792:-153.851,-11.7547,0	0/1:58:20,38:20:720:38:1361:-102.311,0,-46.4722	1/1:132:0,132:0:0:132:4736:-415.829,-39.736,0	0/1:30:16,14:16:561:14:503:-32.5769,0,-38.4569	1/1:78:0,78:0:0:78:2788:-232.428,-23.4803,0	1/1:80:0,80:0:0:80:2861:-239.085,-24.0824,0	1/1:35:0,35:0:0:35:1260:-104.93,-10.5361,0	0/1:117:69,48:69:2435:48:1722:-108.341,0,-168.081	0/1:67:47,20:47:1666:20:720:-44.0591,0,-126.562	1/1:167:0,166:0:0:166:5935:-521.02,-49.971,0	1/1:88:0,88:0:0:88:3138:-271.582,-26.4906,0
chr02	20646105	.	C	A	17179.2	PASS	AB=0.522538;ABP=10.9385;AC=30;AF=0.159574;AN=188;AO=953;CIGAR=1X;DP=6620;DPB=6620;DPRA=1.15705;EPP=1599.3;EPPR=12267.5;GTI=2;LEN=1;MEANALT=1.02381;MQM=46.8678;MQMR=47.4147;NS=94;NUMALT=1;ODDS=0.494878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33947;QR=201623;RO=5664;RPL=58;RPP=1599.3;RPPR=12267.5;RPR=895;RUN=1;SAF=0;SAP=2072.42;SAR=953;SRF=0;SRP=12302.2;SRR=5664;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.2382	0/0:107:107,0:107:3840:0:0:0,-32.2102,-342.51	0/0:70:69,1:69:2437:1:36:0,-17.8259,-213.285	0/0:163:163,0:163:5826:0:0:0,-49.0679,-515.822	0/1:75:45,30:45:1588:30:1072:-72.7569,0,-119.022	0/1:45:28,17:28:999:17:612:-41.597,0,-75.8994	0/0:84:84,0:84:2999:0:0:0,-25.2865,-266.272	0/0:113:113,0:113:4018:0:0:0,-34.0164,-358.256	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.052	0/0:60:59,1:59:2105:1:36:0,-14.8156,-183.952	0/0:70:70,0:70:2472:0:0:0,-21.0721,-218.637	0/0:56:56,0:56:2003:0:0:0,-16.8577,-178.944	0/0:39:39,0:39:1373:0:0:0,-11.7402,-122.789	0/1:90:37,53:37:1300:53:1900:-142.185,0,-88.3364	0/1:31:15,16:15:540:16:576:-42.268,0,-38.5074	0/1:35:11,24:11:387:24:853:-64.8318,0,-24.1484	0/0:49:49,0:49:1734:0:0:0,-14.7505,-154.39	0/1:27:11,16:11:392:16:576:-43.7545,0,-27.0054	0/0:36:36,0:36:1288:0:0:0,-10.8371,-115.459	0/1:167:78,89:78:2778:89:3159:-229.972,0,-195.359	0/1:53:26,27:26:919:27:964:-69.825,0,-66.3489	0/0:87:87,0:87:3107:0:0:0,-26.1896,-276.127	0/0:31:31,0:31:1112:0:0:0,-9.33193,-98.6495	0/1:84:37,47:37:1315:47:1675:-123.706,0,-92.4421	0/0:40:40,0:40:1432:0:0:0,-12.0412,-128.216	0/0:286:283,2:283:10084:2:72:0,-79.6683,-893.239	0/0:147:147,0:147:5207:0:0:0,-44.2514,-465.187	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.3382	0/0:182:181,1:181:6473:1:36:0,-51.2389,-575.098	0/0:112:111,0:111:3939:0:0:0,-33.4143,-350.568	0/1:74:38,36:38:1340:36:1284:-92.3796,0,-97.0917	0/1:3:2,1:2:63:1:36:-2.66372,0,-5.05915	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.5329	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.79966	0/1:19:14,5:14:491:5:176:-10.2878,0,-38.5798	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.52	0/0:142:142,0:142:5033:0:0:0,-42.7463,-447.097	0/0:235:235,0:235:8373:0:0:0,-70.742,-746.488	0/1:58:22,36:22:769:36:1279:-97.277,0,-49.9224	0/1:2:1,1:1:36:1:36:-2.96475,0,-2.6441	0/0:72:71,0:71:2526:0:0:0,-21.3731,-226.083	0/0:26:26,0:26:895:0:0:0,-7.82678,-80.2281	0/0:69:69,0:69:2454:0:0:0,-20.7711,-219.325	0/0:45:45,0:45:1579:0:0:0,-13.5463,-139.977	0/1:62:30,32:30:1058:32:1140:-82.8056,0,-75.7036	0/0:74:73,1:73:2587:1:36:0,-19.0301,-227.634	0/1:100:50,50:50:1788:50:1773:-127.959,0,-130.217	0/0:152:152,0:152:5439:0:0:0,-45.7566,-481.456	0/0:79:79,0:79:2797:0:0:0,-23.7814,-247.637	0/0:106:106,0:106:3790:0:0:0,-31.9092,-334.545	0/0:144:143,1:143:5123:1:36:0,-39.7998,-453.42	0/1:9:5,4:5:176:4:144:-9.85095,0,-13.2737	0/0:88:88,0:88:3134:0:0:0,-26.4906,-279.209	0/0:49:49,0:49:1755:0:0:0,-14.7505,-157.29	0/1:13:6,7:6:216:7:252:-18.9566,0,-15.7698	0/1:66:30,36:30:1067:36:1284:-95.157,0,-75.5026	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.2598	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.79966	0/1:20:10,10:10:360:10:360:-26.2709,0,-26.5462	0/0:78:78,0:78:2787:0:0:0,-23.4803,-248.799	0/1:119:54,65:54:1921:65:2316:-169.805,0,-134.462	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1295	0/0:137:136,1:136:4849:1:36:0,-37.9949,-429.041	0/1:140:61,79:61:2184:79:2811:-207.833,0,-150.541	0/0:77:75,2:75:2675:2:72:0,-16.707,-231.862	0/0:62:62,0:62:2206:0:0:0,-18.6639,-196.353	0/1:98:48,50:48:1720:50:1774:-128.792,0,-122.755	0/0:106:106,0:106:3766:0:0:0,-31.9092,-332.835	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.0022	0/0:49:49,0:49:1744:0:0:0,-14.7505,-153.962	0/1:69:31,38:31:1112:38:1356:-99.4998,0,-78.0454	0/0:30:30,0:30:1067:0:0:0,-9.0309,-95.0472	0/0:98:97,1:97:3440:1:36:0,-26.2548,-304.395	0/1:34:15,19:15:518:19:680:-49.8459,0,-36.4889	0/0:125:125,0:125:4466:0:0:0,-37.6287,-399.468	0/0:48:48,0:48:1711:0:0:0,-14.4494,-151.424	0/0:94:94,0:94:3351:0:0:0,-28.2968,-298.957	0/0:79:79,0:79:2824:0:0:0,-23.7814,-252.767	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.5668	0/0:53:52,1:52:1851:1:36:0,-12.3878,-161.708	0/1:70:45,25:45:1603:25:874:-57.2793,0,-122.127	0/0:146:145,1:145:5183:1:36:0,-40.8958,-454.948	0/0:61:61,0:61:2168:0:0:0,-18.3628,-192.728	0/0:37:37,0:37:1304:0:0:0,-11.1381,-116.163	0/1:44:23,21:23:807:21:756:-53.8468,0,-58.3678	0/0:100:100,0:100:3544:0:0:0,-30.103,-312.584	0/1:24:15,9:15:527:9:319:-21.6889,0,-40.2961	0/0:53:53,0:53:1868:0:0:0,-15.9546,-167.251	0/0:51:51,0:51:1801:0:0:0,-15.3525,-161.56	0/0:46:46,0:46:1629:0:0:0,-13.8474,-144.952	0/1:120:55,65:55:1960:65:2298:-168.184,0,-138.286	0/1:46:15,31:15:540:31:1108:-85.1867,0,-34.4575	0/0:74:73,1:73:2620:1:36:0,-19.2217,-228.803	0/0:53:53,0:53:1887:0:0:0,-15.9546,-167.41
chr02	20729355	.	C	T	19334.7	PASS	AB=0.547771;ABP=43.4661;AC=30;AF=0.16129;AN=186;AO=1137;CIGAR=1X;DP=6926;DPB=6926;DPRA=1.15958;EPP=2471.97;EPPR=12562.8;GTI=2;LEN=1;MEANALT=1;MQM=56.9578;MQMR=59.7156;NS=93;NUMALT=1;ODDS=0.356982;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40496;QR=205324;RO=5788;RPL=1137;RPP=2471.97;RPPR=12562.8;RPR=0;RUN=1;SAF=1137;SAP=2471.97;SAR=0;SRF=5788;SRP=12571.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1126:0:0:0,-9.63296,-101.647	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.152	0/0:123:123,0:123:4403:0:0:0,-37.0267,-396.419	0/0:176:176,0:176:6277:0:0:0,-52.9813,-564.893	0/1:30:12,18:12:432:18:639:-48.6404,0,-30.1903	0/1:28:14,14:14:492:14:495:-36.1582,0,-36.1801	0/0:92:92,0:92:3263:0:0:0,-27.6948,-293.881	0/0:92:92,0:92:3267:0:0:0,-27.6948,-293.863	0/0:88:88,0:88:3113:0:0:0,-26.4906,-280.37	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:85:83,2:83:2931:2:72:0,-18.7508,-256.821	0/0:98:98,0:98:3476:0:0:0,-29.5009,-313.034	0/0:48:48,0:48:1679:0:0:0,-14.4494,-151.386	0/1:53:28,25:28:1004:25:859:-61.4969,0,-74.7213	0/1:42:23,19:23:819:19:684:-49.2333,0,-61.3883	0/1:63:41,22:41:1454:22:774:-50.7242,0,-112.187	0/0:23:23,0:23:810:0:0:0,-6.92369,-73.219	0/1:20:7,13:7:252:13:468:-36.2919,0,-17.005	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1866	0/1:163:59,104:59:2090:104:3710:-284.606,0,-139.301	0/1:148:55,93:55:1960:93:3322:-254.149,0,-132.118	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.939	0/0:144:143,1:143:5102:1:32:0,-40.149,-456.061	0/1:62:38,24:38:1355:24:860:-59.02,0,-103.584	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.776	0/0:198:198,0:198:7029:0:0:0,-59.6039,-632.673	0/0:195:195,0:195:6946:0:0:0,-58.7008,-624.966	0/0:21:20,0:20:697:0:0:0,-6.0206,-62.4405	0/0:137:137,0:137:4888:0:0:0,-41.2411,-438.428	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.25	0/1:154:68,86:68:2415:86:3077:-230.387,0,-169.688	.:.:.:.:.:.:.:.	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5012	0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2909	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.32156	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:174:174,0:174:6142:0:0:0,-52.3792,-552.857	0/0:39:39,0:39:1372:0:0:0,-11.7402,-123.776	0/1:64:26,38:26:913:38:1349:-101.932,0,-63.2181	0/1:2:1,1:1:36:1:36:-2.9945,0,-2.99621	0/0:83:83,0:83:2948:0:0:0,-24.9855,-265.512	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:111:111,0:111:3926:0:0:0,-33.4143,-353.473	0/0:64:64,0:64:2248:0:0:0,-19.2659,-202.578	0/1:67:37,30:37:1292:30:1067:-76.1662,0,-96.3643	0/0:39:39,0:39:1374:0:0:0,-11.7402,-123.454	0/1:65:13,52:13:460:52:1860:-147.906,0,-22.1617	0/0:85:84,1:84:2996:1:36:0,-21.9893,-266.274	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.914	0/0:106:106,0:106:3790:0:0:0,-31.9092,-341.297	0/0:74:74,0:74:2628:0:0:0,-22.2762,-236.766	0/1:17:13,4:13:468:4:144:-8.19611,0,-37.3421	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.153	0/0:78:78,0:78:2765:0:0:0,-23.4803,-249.069	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82968	0/1:199:71,128:71:2495:128:4571:-350.984,0,-164.897	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:70:70,0:70:2479:0:0:0,-21.0721,-222.338	0/1:93:41,52:41:1476:52:1847:-138.325,0,-105.14	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:240:240,0:240:8512:0:0:0,-72.2472,-765.938	0/1:160:73,87:73:2559:87:3107:-231.561,0,-182.226	0/1:57:50,7:50:1774:7:252:-5.84303,0,-142.781	0/0:75:75,0:75:2615:0:0:0,-22.5772,-235.593	0/1:155:64,91:64:2252:91:3242:-243.664,0,-156.282	0/0:151:151,0:151:5377:0:0:0,-45.4555,-483.99	0/0:43:43,0:43:1518:0:0:0,-12.9443,-136.84	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.627	0/1:32:15,17:15:532:17:612:-45.682,0,-38.5801	0/0:32:32,0:32:1122:0:0:0,-9.63296,-101.284	0/0:68:68,0:68:2385:0:0:0,-20.47,-214.898	0/1:68:36,32:36:1277:32:1144:-82.5924,0,-94.5927	0/0:161:160,1:160:5640:1:36:0,-44.9173,-504.139	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.662	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9178	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.841	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:29:28,1:28:1000:1:36:0,-5.1333,-86.7188	0/1:62:33,29:33:1166:29:1012:-72.4342,0,-86.5813	0/0:184:183,1:183:6451:1:36:0,-51.7912,-576.965	0/0:40:40,0:40:1412:0:0:0,-12.0412,-127.371	0/0:60:60,0:60:2121:0:0:0,-18.0618,-190.727	0/1:23:10,13:10:356:13:454:-34.2347,0,-25.4576	0/0:110:110,0:110:3899:0:0:0,-33.1133,-351.034	0/1:19:14,5:14:504:5:180:-10.8189,0,-39.9723	0/0:69:69,0:69:2420:0:0:0,-20.7711,-218.012	0/0:73:73,0:73:2598:0:0:0,-21.9752,-233.948	0/0:34:34,0:34:1197:0:0:0,-10.235,-108.029	0/1:128:59,69:59:2072:69:2444:-181.283,0,-148.209	0/1:62:18,44:18:644:44:1575:-122.56,0,-39.6267	0/0:188:187,1:187:6625:1:36:0,-52.9954,-592.434	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.27
chr02	20729461	.	C	T	86606.1	PASS	AB=0.5;ABP=3.0103;AC=159;AF=0.845745;AN=188;AO=3875;CIGAR=1X;DP=4443;DPB=4443;DPRA=15.914;EPP=8348.12;EPPR=1199.74;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.424;MQMR=59.8765;NS=94;NUMALT=1;ODDS=0.414277;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138804;QR=20285;RO=567;RPL=8;RPP=8348.12;RPPR=1199.74;RPR=3867;RUN=1;SAF=3875;SAP=8417.47;SAR=0;SRF=567;SRP=1234.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:46:0,46:0:0:46:1636:-147.529,-13.8474,0	1/1:88:0,88:0:0:88:3151:-283.736,-26.4906,0	1/1:77:0,77:0:0:77:2768:-249.295,-23.1793,0	0/1:20:9,11:9:324:11:392:-29.5993,0,-23.477	0/1:22:12,10:12:428:10:360:-26.1216,0,-32.2361	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:80:0,80:0:0:80:2859:-256.337,-24.0824,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:16:0,16:0:0:16:576:-52.1668,-4.81648,0	1/1:38:0,38:0:0:38:1364:-123.034,-11.4391,0	1/1:74:0,74:0:0:74:2638:-237.6,-22.2762,0	1/1:39:0,39:0:0:39:1381:-124.574,-11.7402,0	0/1:38:14,24:14:500:24:856:-65.9138,0,-33.897	0/1:26:11,15:11:396:15:536:-40.7398,0,-28.156	0/1:43:25,18:25:880:18:635:-44.2139,0,-66.5652	1/1:27:0,27:0:0:27:972:-87.7816,-8.12781,0	0/1:25:16,9:16:576:9:320:-21.6162,0,-44.6492	1/1:34:0,34:0:0:34:1224:-110.451,-10.235,0	0/1:43:22,21:22:792:21:756:-55.4229,0,-58.6614	0/1:63:28,35:28:1004:35:1260:-94.7406,0,-71.6946	1/1:67:0,67:0:0:67:2408:-216.926,-20.169,0	1/1:43:0,43:0:0:43:1544:-139.142,-12.9443,0	0/1:18:12,6:12:432:6:210:-13.8211,0,-33.8027	1/1:38:0,38:0:0:38:1368:-123.404,-11.4391,0	1/1:114:0,114:0:0:114:4100:-368.108,-34.3174,0	1/1:120:0,120:0:0:120:4286:-385.89,-36.1236,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:147:0,147:0:0:147:5269:-474.056,-44.2514,0	1/1:91:0,91:0:0:91:3253:-292.93,-27.3937,0	0/1:59:34,25:34:1220:25:896:-63.1877,0,-92.346	1/1:11:0,11:0:0:11:396:-35.8876,-3.31133,0	1/1:5:0,5:0:0:5:161:-14.8015,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:2,5:2:68:5:176:-14.0778,0,-4.3505	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:123:0,123:0:0:123:4416:-397.558,-37.0267,0	1/1:89:0,89:0:0:89:3192:-286.306,-26.7917,0	0/1:49:27,22:27:972:22:792:-56.847,0,-73.0474	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0172	1/1:79:0,79:0:0:79:2821:-254.106,-23.7814,0	1/1:21:0,21:0:0:21:744:-67.2824,-6.32163,0	1/1:67:0,67:0:0:67:2408:-216.866,-20.169,0	1/1:15:0,15:0:0:15:540:-48.9361,-4.51545,0	0/1:36:21,15:21:748:15:540:-38.0995,0,-56.8	1/1:41:0,41:0:0:41:1476:-133.128,-12.3422,0	0/1:68:25,43:25:883:43:1540:-118.423,0,-59.3174	1/1:94:0,94:0:0:94:3371:-303.58,-28.2968,0	1/1:29:0,29:0:0:29:1044:-94.2666,-8.72987,0	1/1:58:0,58:0:0:58:2088:-188,-17.4597,0	1/1:56:0,56:0:0:56:2016:-181.678,-16.8577,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:80:0,80:0:0:80:2876:-258.966,-24.0824,0	1/1:26:0,26:0:0:26:927:-83.5899,-7.82678,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:87:34,53:34:1211:53:1889:-144.038,0,-83.0883	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:42:0,42:0:0:42:1512:-136.358,-12.6433,0	0/1:89:45,44:45:1616:44:1569:-114.683,0,-118.938	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:43:0,43:0:0:43:1548:-139.353,-12.9443,0	0/1:63:35,28:35:1252:28:1004:-71.6946,0,-94.0186	1/1:36:2,34:2:72:34:1220:-103.27,-4.00036,0	1/1:31:0,31:0:0:31:1108:-100.006,-9.33193,0	0/1:42:30,12:30:1080:12:432:-26.4473,0,-84.87	1/1:77:1,75:1:36:75:2692:-238.937,-19.5649,0	1/1:31:0,31:0:0:31:1116:-100.733,-9.33193,0	1/1:21:0,21:0:0:21:752:-67.9979,-6.32163,0	0/1:40:27,13:27:964:13:468:-30.3925,0,-75.0356	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:72:0,72:0:0:72:2592:-233.494,-21.6742,0	0/1:42:17,25:17:612:25:896:-68.3007,0,-42.7702	1/1:73:0,73:0:0:73:2603:-233.157,-21.9752,0	1/1:79:0,79:0:0:79:2821:-254.109,-23.7814,0	1/1:142:1,141:1:36:141:5022:-448.187,-39.148,0	1/1:58:0,58:0:0:58:2084:-187.801,-17.4597,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:80:0,80:0:0:80:2868:-258.324,-24.0824,0	0/1:53:19,34:19:680:34:1192:-91.5791,0,-45.5746	1/1:56:0,56:0:0:56:1992:-179.276,-16.8577,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:27:0,27:0:0:27:964:-86.5091,-8.12781,0	0/1:16:6,10:6:212:10:360:-27.9278,0,-14.6083	1/1:71:0,71:0:0:71:2552:-229.552,-21.3731,0	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	1/1:66:0,66:0:0:66:2372:-213.687,-19.868,0	1/1:37:0,37:0:0:37:1328:-119.806,-11.1381,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:98:41,57:41:1472:57:2037:-154.058,0,-103.275	0/1:46:34,12:34:1207:12:432:-25.3738,0,-95.0879	1/1:73:0,73:0:0:73:2609:-235.048,-21.9752,0	1/1:48:0,48:0:0:48:1728:-155.789,-14.4494,0
chr02	20739340	.	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chr02	20740017	.	A	T	11146.8	PASS	AB=0.380418;ABP=567.531;AC=47;AF=0.25;AN=188;AO=1758;CIGAR=1X;DP=7683;DPB=7683;DPRA=1.50645;EPP=3820.46;EPPR=12858.1;GTI=3;LEN=1;MEANALT=1.03571;MQM=27.0535;MQMR=36.8052;NS=94;NUMALT=1;ODDS=0.518167;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62882;QR=212104;RO=5920;RPL=0;RPP=3820.46;RPPR=12858.1;RPR=1758;RUN=1;SAF=1758;SAP=3820.46;SAR=0;SRF=5920;SRP=12858.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:12,6:12:432:6:216:-11.1826,0,-32.4941	0/0:80:79,0:79:2836:0:0:0,-23.7814,-216.656	0/0:40:40,0:40:1436:0:0:0,-12.0412,-110.301	0/1:147:86,61:86:3088:61:2177:-90.6391,0,-196.608	0/1:48:34,14:34:1216:14:500:-19.6738,0,-87.1244	0/1:62:34,28:34:1224:28:1004:-55.1142,0,-87.5575	0/1:142:81,61:81:2904:61:2185:-90.1129,0,-190.03	0/0:80:80,0:80:2876:0:0:0,-24.0824,-218.556	0/1:91:61,30:61:2165:30:1072:-50.4377,0,-148.305	0/1:79:41,38:41:1453:38:1364:-60.516,0,-86.0437	0/0:53:53,0:53:1904:0:0:0,-15.9546,-128.162	0/1:127:82,45:82:2952:45:1616:-79.2913,0,-201.926	0/0:66:66,0:66:2376:0:0:0,-19.868,-178.665	0/0:70:70,0:70:2501:0:0:0,-21.0721,-177.03	0/0:67:67,0:67:2408:0:0:0,-20.169,-159.246	0/1:93:56,37:56:2016:37:1310:-62.0489,0,-131.36	0/0:59:59,0:59:2124:0:0:0,-17.7608,-160.032	0/0:34:34,0:34:1220:0:0:0,-10.235,-91.4248	0/1:68:49,19:49:1756:19:684:-30.0006,0,-127.724	0/1:126:82,43:82:2933:43:1540:-57.758,0,-201.83	0/1:155:71,84:71:2548:84:3009:-159.915,0,-159.564	0/0:68:68,0:68:2440:0:0:0,-20.47,-145.097	0/0:81:80,1:80:2872:1:36:0,-21.9165,-225.475	0/0:53:48,5:48:1728:5:180:0,-3.36806,-111.291	0/1:78:52,26:52:1868:26:932:-42.0379,0,-128.78	0/0:171:167,4:167:5978:4:144:0,-43.3985,-354.812	0/1:221:111,110:111:3957:110:3933:-204.012,0,-251.743	0/1:48:33,15:33:1184:15:540:-21.1283,0,-80.6024	0/0:120:119,1:119:4220:1:36:0,-33.9404,-253.235	0/1:143:83,60:83:2984:60:2145:-105.617,0,-196.299	0/0:73:73,0:73:2601:0:0:0,-21.9752,-171.658	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.692	0/1:35:27,8:27:972:8:288:-9.43823,0,-73.3999	0/0:7:7,0:7:252:0:0:0,-2.10721,-19.549	0/0:13:13,0:13:460:0:0:0,-3.91339,-34.4968	0/1:9:8,1:8:288:1:36:-0.193495,0,-21.435	0/0:259:259,0:259:9282:0:0:0,-77.9668,-553.508	0/1:190:123,67:123:4401:67:2389:-106.109,0,-308.989	0/1:104:69,35:69:2468:35:1260:-60.4202,0,-172.699	0/1:2:1,1:1:36:1:36:-2.13414,0,-2.21902	0/0:55:54,1:54:1940:1:36:0,-13.0081,-133.246	0/0:45:45,0:45:1616:0:0:0,-13.5463,-111.281	0/1:86:55,31:55:1972:31:1106:-49.6477,0,-141.329	0/1:116:83,33:83:2988:33:1184:-38.5198,0,-192.04	0/0:59:59,0:59:2116:0:0:0,-17.7608,-141.939	0/1:95:40,55:40:1432:55:1957:-81.0739,0,-74.3227	0/0:69:69,0:69:2480:0:0:0,-20.7711,-183.895	0/0:84:84,0:84:3012:0:0:0,-25.2865,-200.229	0/1:141:75,66:75:2647:66:2339:-103.126,0,-164.5	0/1:109:55,54:55:1976:54:1929:-88.7643,0,-120.019	0/1:112:78,34:78:2808:34:1208:-33.2196,0,-181.928	0/1:11:7,4:7:252:4:144:-5.81622,0,-18.8494	0/1:117:70,47:70:2520:47:1677:-87.2798,0,-174.676	0/0:67:59,8:59:2120:8:288:0,-4.41078,-158.991	0/0:22:22,0:22:788:0:0:0,-6.62266,-59.7691	0/0:53:52,1:52:1868:1:36:0,-14.8559,-128.85	0/0:49:43,6:43:1533:6:216:0,-1.18249,-109.181	0/0:11:11,0:11:396:0:0:0,-3.31133,-24.2354	0/1:18:8,10:8:288:10:352:-14.2282,0,-16.2913	0/1:53:33,20:33:1184:20:711:-33.4592,0,-81.5098	0/0:122:122,0:122:4388:0:0:0,-36.7257,-290.833	0/1:12:8,4:8:288:4:144:-5.51519,0,-20.0549	0/1:165:88,77:88:3133:77:2764:-103.058,0,-188.817	0/0:103:101,2:101:3624:2:72:0,-26.319,-239.367	0/1:49:27,22:27:972:22:792:-39.7,0,-58.546	0/0:60:60,0:60:2152:0:0:0,-18.0618,-143.287	0/1:158:107,51:107:3818:51:1828:-65.1439,0,-261.967	0/0:48:48,0:48:1728:0:0:0,-14.4494,-114.136	0/1:35:22,13:22:792:13:468:-22.3474,0,-50.8033	0/1:82:60,22:60:2152:22:779:-32.0073,0,-150.661	0/0:64:64,0:64:2300:0:0:0,-19.2659,-138.24	0/0:9:9,0:9:324:0:0:0,-2.70927,-21.8757	0/0:87:87,0:87:3113:0:0:0,-26.1896,-238.436	0/0:46:46,0:46:1656:0:0:0,-13.8474,-126.068	0/0:103:103,0:103:3700:0:0:0,-31.0061,-263.213	0/0:67:67,0:67:2408:0:0:0,-20.169,-157.777	0/1:102:57,45:57:2044:45:1589:-86.4333,0,-144.403	0/1:108:73,35:73:2575:35:1256:-59.3044,0,-185.211	0/0:9:9,0:9:320:0:0:0,-2.70927,-26.5664	0/0:77:77,0:77:2749:0:0:0,-23.1793,-211.4	0/1:104:54,50:54:1940:50:1795:-99.5392,0,-129.592	0/0:74:74,0:74:2625:0:0:0,-22.2762,-175.863	0/0:110:110,0:110:3956:0:0:0,-33.1133,-264.242	0/0:48:48,0:48:1724:0:0:0,-14.4494,-113.767	0/0:73:73,0:73:2628:0:0:0,-21.9752,-175.099	0/1:207:136,68:136:4876:68:2432:-92.0738,0,-307.802	0/1:59:42,17:42:1508:17:612:-27.5359,0,-107.049	0/1:114:77,37:77:2764:37:1328:-63.1103,0,-194.624	0/1:118:88,30:88:3148:30:1076:-41.3819,0,-227.642	0/1:59:42,17:42:1512:17:612:-25.335,0,-106.9	0/1:226:169,57:169:6030:57:2048:-70.6676,0,-414.321	0/1:103:62,41:62:2220:41:1472:-60.2692,0,-155.11	0/0:27:27,0:27:953:0:0:0,-8.12781,-64.3281	0/0:98:98,0:98:3509:0:0:0,-29.5009,-233.822
chr02	20740027	.	G	A	20817.6	PASS	AB=0.325234;ABP=1280.41;AC=52;AF=0.276596;AN=188;AO=1572;CIGAR=1X;DP=7657;DPB=7657;DPRA=1.3738;EPP=3390.56;EPPR=13173;GTI=4;LEN=1;MEANALT=1.12281;MQM=59.7691;MQMR=27.9399;NS=94;NUMALT=1;ODDS=1.69346;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55996;QR=217346;RO=6073;RPL=3;RPP=3390.56;RPPR=13173;RPR=1569;RUN=1;SAF=1572;SAP=3416.56;SAR=0;SRF=6073;SRP=13190.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:10,9:10:356:9:320:-23.4219,0,-22.3461	0/0:79:79,0:79:2825:0:0:0,-23.7814,-215.789	0/0:38:38,0:38:1349:0:0:0,-11.4391,-103.912	0/1:152:108,44:108:3857:44:1538:-92.9431,0,-201.66	0/1:48:27,21:27:972:21:756:-53.9162,0,-53.3782	0/1:61:38,23:38:1368:23:804:-54.3165,0,-83.0496	0/1:143:97,46:97:3469:46:1632:-104.119,0,-175.69	0/0:81:80,1:80:2876:1:36:0,-20.7852,-214.317	0/1:92:71,21:71:2524:21:752:-40.3084,0,-160.038	0/1:80:64,16:64:2300:16:572:-27.7285,0,-121.565	0/0:54:54,0:54:1936:0:0:0,-16.2556,-130.505	0/1:126:90,36:90:3221:36:1288:-78.2938,0,-199.405	0/0:64:64,0:64:2296:0:0:0,-19.2659,-173.125	0/0:71:70,0:70:2493:0:0:0,-21.0721,-175.59	0/0:65:64,0:64:2288:0:0:0,-19.2659,-149.856	0/1:92:70,22:70:2516:22:788:-43.5469,0,-145.884	0/0:59:59,0:59:2105:0:0:0,-17.7608,-159.002	0/0:34:34,0:34:1224:0:0:0,-10.235,-91.5651	0/1:67:39,28:39:1389:28:975:-67.8899,0,-85.3195	0/1:127:74,53:74:2652:53:1869:-130.254,0,-130.889	0/1:157:120,37:120:4293:37:1309:-70.8357,0,-251.413	0/0:64:64,0:64:2260:0:0:0,-19.2659,-136.681	0/1:82:38,44:38:1368:44:1553:-115.375,0,-66.6213	0/0:53:51,2:51:1832:2:72:0,-9.11787,-122.855	0/1:78:49,29:49:1760:29:1040:-70.4325,0,-100.406	0/0:168:165,1:165:5886:1:36:0,-46.7096,-350.529	0/1:220:170,50:170:6048:50:1777:-93.8994,0,-355.235	0/1:48:33,15:33:1188:15:532:-33.6053,0,-67.5428	0/0:120:120,0:120:4301:0:0:0,-36.1236,-259.137	0/1:141:102,39:102:3660:39:1396:-83.4917,0,-214.022	0/0:75:75,0:75:2688:0:0:0,-22.5772,-177.081	0/1:5:4,1:4:144:1:36:-2.09312,0,-8.93285	0/1:35:14,21:14:504:21:737:-56.0447,0,-25.0993	0/0:7:7,0:7:252:0:0:0,-2.10721,-19.549	0/0:13:12,1:12:432:1:36:0,-0.316121,-27.9387	0/1:9:5,4:5:180:4:144:-10.6043,0,-11.0623	0/0:259:259,0:259:9300:0:0:0,-77.9668,-554.55	0/1:187:106,81:106:3816:81:2896:-204.584,0,-205.455	0/1:105:74,31:74:2664:31:1100:-67.7009,0,-166.317	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.27942	0/0:56:56,0:56:2004:0:0:0,-16.8577,-142.16	0/0:45:45,0:45:1612:0:0:0,-13.5463,-110.922	0/1:86:47,39:47:1684:39:1396:-100.049,0,-90.8347	0/1:113:81,32:81:2912:32:1148:-69.6119,0,-154.3	0/0:57:57,0:57:2033:0:0:0,-17.1587,-137.593	0/1:92:76,15:76:2709:15:536:-20.8495,0,-126.497	0/0:70:69,1:69:2463:1:36:0,-17.4738,-178.962	0/0:82:82,0:82:2933:0:0:0,-24.6845,-195.512	0/1:138:101,36:101:3581:36:1269:-73.0497,0,-187.569	0/1:109:86,23:86:3065:23:820:-41.3102,0,-165.832	0/1:110:69,41:69:2457:41:1472:-99.6581,0,-109.515	0/1:11:5,6:5:180:6:216:-16.4792,0,-8.20359	0/1:117:82,35:82:2952:35:1237:-76.4118,0,-183.98	0/1:66:23,43:23:820:43:1540:-119.022,0,-28.1571	0/0:22:22,0:22:777:0:0:0,-6.62266,-59.0165	0/0:52:52,0:52:1849:0:0:0,-15.6536,-128.458	0/1:49:26,23:26:928:23:813:-58.7382,0,-47.2418	0/0:9:9,0:9:324:0:0:0,-2.70927,-19.4629	0/1:19:15,4:15:536:4:144:-7.50564,0,-24.3814	0/1:56:37,19:37:1317:19:684:-45.0326,0,-75.6486	0/0:124:124,0:124:4452:0:0:0,-37.3277,-294.885	0/1:12:8,4:8:288:4:144:-9.69968,0,-15.9254	0/1:160:118,41:118:4229:41:1449:-82.4234,0,-194.075	0/0:104:104,0:104:3710:0:0:0,-31.3071,-249.837	0/1:49:42,7:42:1508:7:248:-7.91216,0,-89.9435	0/0:60:60,0:60:2152:0:0:0,-18.0618,-143.346	0/1:157:90,66:90:3217:66:2364:-165.669,0,-157.824	0/0:48:48,0:48:1724:0:0:0,-14.4494,-114.134	0/1:35:28,7:28:993:7:252:-12.4929,0,-59.2124	0/1:83:59,24:59:2124:24:845:-51.1068,0,-133.47	0/0:64:63,0:63:2268:0:0:0,-18.9649,-134.886	0/0:9:9,0:9:324:0:0:0,-2.70927,-21.8757	0/0:86:86,0:86:3081:0:0:0,-25.8886,-236.208	0/0:46:46,0:46:1652:0:0:0,-13.8474,-125.927	0/0:103:103,0:103:3662:0:0:0,-31.0061,-261.359	0/0:68:68,0:68:2448:0:0:0,-20.47,-160.816	0/1:102:64,36:64:2292:36:1292:-86.1247,0,-140.102	0/1:104:65,39:65:2302:39:1404:-95.3522,0,-141.168	0/1:9:6,3:6:212:3:108:-7.3659,0,-14.1239	0/1:77:55,22:55:1976:22:780:-47.3422,0,-118.021	0/1:105:80,24:80:2857:24:837:-43.9794,0,-180.568	0/0:74:74,0:74:2656:0:0:0,-22.2762,-176.673	0/0:113:113,0:113:4051:0:0:0,-34.0164,-271.371	0/0:48:48,0:48:1709:0:0:0,-14.4494,-113.059	0/0:73:73,0:73:2609:0:0:0,-21.9752,-174.456	0/1:204:151,53:151:5420:53:1900:-109.858,0,-287.109	0/1:58:39,19:39:1404:19:680:-44.0671,0,-88.1862	0/1:114:78,36:78:2774:36:1292:-82.2654,0,-173.184	0/1:117:74,43:74:2660:43:1544:-104.025,0,-163.238	0/1:58:33,25:33:1180:25:896:-63.4991,0,-66.0498	0/1:227:141,86:141:5055:86:3080:-209.067,0,-280.603	0/1:104:60,44:60:2145:44:1576:-110.823,0,-105.88	0/0:25:25,0:25:896:0:0:0,-7.52575,-59.867	0/0:98:98,0:98:3516:0:0:0,-29.5009,-234.281
chr02	20740059	.	C	T	20869.1	PASS	AB=0.330279;ABP=1204.46;AC=52;AF=0.276596;AN=188;AO=1614;CIGAR=1X;DP=7623;DPB=7623;DPRA=1.88482;EPP=3507.77;EPPR=13049.2;GTI=4;LEN=1;MEANALT=1.01351;MQM=59.2398;MQMR=27.8961;NS=94;NUMALT=1;ODDS=1.71667;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57181;QR=211352;RO=6008;RPL=1614;RPP=3507.77;RPPR=13049.2;RPR=0;RUN=1;SAF=1614;SAP=3507.77;SAR=0;SRF=6008;SRP=13049.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:11,9:11:379:9:315:-22.6657,0,-24.2069	0/0:77:77,0:77:2718:0:0:0,-23.1793,-208.572	0/0:38:38,0:38:1356:0:0:0,-11.4391,-104.523	0/1:148:107,41:107:3755:41:1442:-85.5133,0,-197.782	0/1:47:25,22:25:900:22:778:-56.1866,0,-47.9208	0/1:63:38,25:38:1325:25:887:-61.1832,0,-80.9332	0/1:142:97,45:97:3436:45:1590:-100.639,0,-175.697	0/0:79:77,2:77:2742:2:72:0,-16.9632,-201.318	0/1:91:70,21:70:2445:21:743:-39.796,0,-155.848	0/1:79:63,16:63:2209:16:571:-27.2348,0,-117.789	0/0:53:53,0:53:1851:0:0:0,-15.9546,-126.331	0/1:128:91,37:91:3201:37:1288:-77.6862,0,-198.719	0/0:62:61,1:61:2171:1:36:0,-17.1672,-164.206	0/0:72:72,0:72:2520:0:0:0,-21.6742,-180.106	0/0:65:64,1:64:2232:1:27:0,-16.8672,-148.793	0/1:93:68,25:68:2398:25:872:-50.7973,0,-139.106	0/0:58:56,2:56:1971:2:70:0,-12.8207,-146.216	0/0:34:32,2:32:1114:2:61:0,-6.15956,-81.4036	0/1:69:41,28:41:1433:28:995:-69.0908,0,-88.8661	0/1:127:73,54:73:2600:54:1915:-134.391,0,-128.129	0/1:151:116,35:116:4099:35:1238:-66.23,0,-240.502	0/0:68:67,1:67:2383:1:36:0,-16.9032,-138.113	0/1:80:38,42:38:1335:42:1508:-111.932,0,-66.5782	0/0:53:51,2:51:1797:2:72:0,-9.11787,-121.706	0/1:76:47,29:47:1662:29:998:-67.2465,0,-95.7814	0/0:169:168,1:168:5922:1:25:0,-48.3768,-359.434	0/1:222:168,54:168:5874:54:1911:-105.407,0,-346.349	0/1:45:31,14:31:1095:14:492:-31.066,0,-63.1495	0/0:121:120,1:120:4228:1:36:0,-32.8578,-252.843	0/1:141:101,40:101:3547:40:1407:-84.4533,0,-207.94	0/0:73:73,0:73:2580:0:0:0,-21.9752,-171.202	0/1:5:4,1:4:135:1:36:-2.09312,0,-8.62465	0/1:34:14,20:14:491:20:711:-54.0107,0,-25.0241	0/0:7:7,0:7:252:0:0:0,-2.10721,-19.549	0/0:13:13,0:13:460:0:0:0,-3.91339,-34.4968	0/1:9:5,4:5:165:4:144:-10.6043,0,-10.2768	0/0:256:255,1:255:8955:1:36:0,-75.9649,-542.307	0/1:187:104,83:104:3728:83:2959:-208.535,0,-201.503	0/1:105:75,30:75:2659:30:1067:-64.7313,0,-168.384	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.27942	0/0:53:53,0:53:1859:0:0:0,-15.9546,-132.869	0/0:44:43,1:43:1509:1:36:0,-11.9474,-104.64	0/1:87:47,40:47:1624:40:1428:-102.604,0,-87.4137	0/1:115:82,33:82:2870:33:1188:-72.6086,0,-154.325	0/0:58:57,1:57:1970:1:36:0,-13.8929,-130.593	0/1:94:78,16:78:2776:16:566:-22.9453,0,-130.422	0/0:70:68,1:68:2405:1:36:0,-17.457,-176.209	0/0:84:84,0:84:2947:0:0:0,-25.2865,-199.087	0/1:137:99,38:99:3435:38:1322:-78.005,0,-181.435	0/1:108:83,25:83:2931:25:891:-47.9526,0,-157.645	0/1:110:68,42:68:2406:42:1508:-102.868,0,-106.19	0/1:11:5,6:5:180:6:216:-16.4792,0,-8.20359	0/1:116:82,34:82:2906:34:1216:-74.8271,0,-182.727	0/1:66:23,43:23:824:43:1520:-117.221,0,-28.1684	0/0:21:21,0:21:737:0:0:0,-6.32163,-56.1264	0/0:53:53,0:53:1890:0:0:0,-15.9546,-131.724	0/1:49:26,23:26:915:23:824:-59.7324,0,-46.3888	0/0:11:11,0:11:388:0:0:0,-3.31133,-24.1401	0/1:19:15,4:15:523:4:144:-7.50564,0,-24.2562	0/1:55:36,19:36:1279:19:684:-45.3337,0,-73.8038	0/0:119:119,0:119:4152:0:0:0,-35.8226,-280.915	0/1:13:8,5:8:288:5:165:-11.2602,0,-15.6244	0/1:164:120,44:120:4214:44:1576:-92.7059,0,-195.25	0/0:102:101,1:101:3541:1:34:0,-27.3263,-237.663	0/1:49:42,7:42:1504:7:252:-8.27693,0,-89.8699	0/0:58:58,0:58:2057:0:0:0,-17.4597,-139.338	0/1:158:92,66:92:3227:66:2352:-162.192,0,-161.807	0/0:47:47,0:47:1688:0:0:0,-14.1484,-112.91	0/1:36:29,7:29:990:7:248:-11.8271,0,-60.5862	0/1:82:58,24:58:2053:24:838:-51.0301,0,-129.467	0/0:63:62,1:62:2166:1:36:0,-15.5773,-128.588	0/0:9:9,0:9:312:0:0:0,-2.70927,-21.6636	0/0:87:86,1:86:3031:1:28:0,-23.393,-231.484	0/0:45:45,0:45:1584:0:0:0,-13.5463,-121.958	0/0:101:99,2:99:3494:2:72:0,-23.9395,-244.765	0/0:69:68,1:68:2387:1:36:0,-19.3737,-158.218	0/1:97:61,36:61:2157:36:1280:-86.1537,0,-132.119	0/1:104:63,41:63:2232:41:1463:-100.657,0,-135.922	0/1:9:6,3:6:208:3:108:-7.3659,0,-13.9814	0/1:78:55,23:55:1955:23:820:-50.6182,0,-116.326	0/1:104:80,24:80:2836:24:851:-45.6021,0,-180.844	0/0:73:72,1:72:2538:1:36:0,-18.4084,-165.887	0/0:110:108,2:108:3770:2:63:0,-27.2347,-249.982	0/0:48:48,0:48:1692:0:0:0,-14.4494,-113.271	0/0:73:73,0:73:2555:0:0:0,-21.9752,-172.638	0/1:206:150,56:150:5209:56:1992:-117.341,0,-280.952	0/1:59:40,19:40:1403:19:684:-44.1272,0,-89.1118	0/1:115:76,39:76:2651:39:1374:-87.4239,0,-166.862	0/1:113:70,43:70:2479:43:1544:-105.23,0,-152.2	0/1:58:34,24:34:1166:24:838:-58.2757,0,-67.0835	0/1:226:141,85:141:4931:85:3001:-202.263,0,-277.148	0/1:102:60,42:60:2088:42:1468:-101.709,0,-104.63	0/0:27:26,1:26:895:1:33:0,-4.84476,-57.2624	0/0:96:95,1:95:3330:1:36:0,-25.3321,-220.931
chr02	20749359	.	T	A	10500.9	PASS	AB=0.410557;ABP=121.486;AC=29;AF=0.154255;AN=188;AO=703;CIGAR=1X;DP=6619;DPB=6619;DPRA=0.900993;EPP=1529.56;EPPR=12842.9;GTI=3;LEN=1;MEANALT=1;MQM=59.7141;MQMR=59.9577;NS=94;NUMALT=1;ODDS=1.73631;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25198;QR=210639;RO=5913;RPL=703;RPP=1529.56;RPPR=12842.9;RPR=0;RUN=1;SAF=703;SAP=1529.56;SAR=0;SRF=5913;SRP=12842.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:85:84,1:84:3012:1:36:0,-21.9893,-267.713	0/0:37:37,0:37:1298:0:0:0,-11.1381,-117.117	0/0:198:198,0:198:7063:0:0:0,-59.6039,-635.734	0/1:40:26,14:26:914:14:500:-33.295,0,-70.5335	0/1:45:27,18:27:968:18:648:-45.1055,0,-73.891	0/0:82:82,0:82:2915:0:0:0,-24.6845,-261.265	0/0:106:106,0:106:3747:0:0:0,-31.9092,-337.43	0/0:57:57,0:57:2005:0:0:0,-17.1587,-180.722	0/0:75:75,0:75:2666:0:0:0,-22.5772,-240.185	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/0:39:39,0:39:1374:0:0:0,-11.7402,-123.957	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/1:51:29,22:29:1036:22:788:-55.8923,0,-78.2014	0/1:43:33,10:33:1170:10:360:-19.8,0,-92.6592	0/1:48:22,26:22:788:26:932:-69.7494,0,-56.7954	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.695	0/1:31:19,12:19:667:12:432:-29.881,0,-51.0227	0/0:37:37,0:37:1296:0:0:0,-11.1381,-116.938	0/1:122:85,37:85:3043:37:1328:-83.0942,0,-237.373	0/1:78:39,39:39:1388:39:1396:-102.45,0,-101.739	0/0:127:127,0:127:4540:0:0:0,-38.2308,-408.768	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919	0/1:127:65,62:65:2323:62:2224:-162.175,0,-171.099	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:241:241,0:241:8563:0:0:0,-72.5482,-770.618	0/0:148:147,1:147:5227:1:21:0,-42.4525,-468.456	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/0:231:230,0:230:8200:0:0:0,-69.2369,-737.654	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/1:113:71,42:71:2536:42:1512:-102.356,0,-194.475	0/0:13:13,0:13:443:0:0:0,-3.91339,-40.1955	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2068	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/0:172:172,0:172:6140:0:0:0,-51.7772,-552.699	0/0:170:170,0:170:6067:0:0:0,-51.1751,-546.132	0/1:23:14,9:14:500:9:324:-22.5739,0,-38.4043	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:106:106,0:106:3775:0:0:0,-31.9092,-339.95	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:50:26,24:26:936:24:860:-62.6671,0,-69.508	0/0:94:94,0:94:3329:0:0:0,-28.2968,-299.829	0/1:84:61,23:61:2188:23:828:-49.5576,0,-171.899	0/0:158:158,0:158:5604:0:0:0,-47.5627,-504.484	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:69:69,0:69:2471:0:0:0,-20.7711,-222.643	0/0:137:137,0:137:4850:0:0:0,-41.2411,-436.658	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/1:66:45,21:45:1591:21:756:-48.4946,0,-123.61	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:16:12,4:12:432:4:140:-8.1281,0,-34.4047	0/0:66:66,0:66:2335:0:0:0,-19.868,-210.407	0/1:93:49,44:49:1764:44:1568:-113.413,0,-131.048	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:151:151,0:151:5369:0:0:0,-45.4555,-483.321	0/1:164:102,62:102:3635:62:2224:-151.053,0,-277.987	0/0:49:49,0:49:1742:0:0:0,-14.7505,-157.063	0/0:87:87,0:87:3085:0:0:0,-26.1896,-277.867	0/1:100:57,43:57:2027:43:1529:-107.702,0,-152.599	0/0:104:104,0:104:3716:0:0:0,-31.3071,-334.642	0/0:12:11,0:11:392:0:0:0,-3.31133,-35.2605	0/0:55:55,0:55:1943:0:0:0,-16.5566,-175.146	0/1:72:29,43:29:1040:43:1548:-117.879,0,-72.2402	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:116:116,0:116:4130:0:0:0,-34.9195,-371.885	0/1:41:22,19:22:784:19:684:-49.5481,0,-58.5417	0/0:147:147,0:147:5231:0:0:0,-44.2514,-470.801	0/0:53:53,0:53:1880:0:0:0,-15.9546,-169.479	0/0:98:97,0:97:3471:0:0:0,-29.1999,-312.239	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:70:51,19:51:1828:19:684:-40.5825,0,-143.729	0/0:163:162,1:162:5756:1:36:0,-45.4696,-514.472	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.099	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:41:18,23:18:640:23:824:-62.1411,0,-45.5871	0/0:115:115,0:115:4118:0:0:0,-34.6184,-370.801	0/1:37:21,16:21:748:16:576:-41.0287,0,-56.5072	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.906	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.108	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:59:32,27:32:1144:27:968:-69.6766,0,-85.5045	0/1:48:21,27:21:743:27:968:-72.9856,0,-52.7439	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.664	0/0:67:67,0:67:2399:0:0:0,-20.169,-216.166
chr02	20936428	.	TA	AG,AA	138608	PASS	AB=0.502279,0.496063;ABP=3.11919,3.33517;AC=159,29;AF=0.845745,0.154255;AN=188;AO=7670,1206;CIGAR=2X,1X1M;DP=8891;DPB=8892.5;DPRA=0,1.0524;EPP=16658.2,2621.81;EPPR=5.18177;GTI=1;LEN=2,1;MEANALT=1.52128,2.13889;MQM=28.842,40.1551;MQMR=52;NS=94;NUMALT=2;ODDS=2.34169;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=52,52;PQR=0;PRO=0;QA=266586,41985;QR=25;RO=1;RPL=7670,1206;RPP=16658.2,2621.81;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=7670,1206;SAP=16658.2,2621.81;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31,0:0:0:31,0:1104,0:-71.5935,-9.33193,0,-71.5935,-9.33193,-71.5935	1/1:161:0,160,0:0:0:160,0:5512,0:-362.835,-48.1648,0,-362.835,-48.1648,-362.835	1/1:157:0,157,0:0:0:157,0:5434,0:-356.309,-47.2617,0,-356.309,-47.2617,-356.309	1/1:160:0,160,0:0:0:160,0:5513,0:-404.349,-48.1648,0,-404.349,-48.1648,-404.349	1/2:83:0,44,39:0:0:44,39:1497,1364:-197.164,-106.062,-92.8166,-91.4031,0,-79.6629	1/2:31:0,16,15:0:0:16,15:550,536:-72.6806,-41.2976,-36.4811,-31.6786,0,-27.1631	1/1:84:0,84,0:0:0:84,0:2923,0:-213.327,-25.2865,0,-213.327,-25.2865,-213.327	1/1:186:0,186,0:0:0:186,0:6465,0:-423.195,-55.9916,0,-423.195,-55.9916,-423.195	1/1:78:0,78,0:0:0:78,0:2692,0:-177.489,-23.4803,0,-177.489,-23.4803,-177.489	1/1:106:0,106,0:0:0:106,0:3724,0:-271.536,-31.9092,0,-271.536,-31.9092,-271.536	1/1:36:0,36,0:0:0:36,0:1271,0:-92.9443,-10.8371,0,-92.9443,-10.8371,-92.9443	1/1:56:0,56,0:0:0:56,0:1919,0:-127.511,-16.8577,0,-127.511,-16.8577,-127.511	1/1:60:0,60,0:0:0:60,0:2099,0:-137.339,-18.0618,0,-137.339,-18.0618,-137.339	1/2:64:0,30,34:0:0:30,34:1047,1179:-156.207,-92.6147,-83.5838,-63.8927,0,-53.6577	1/2:66:0,27,39:0:0:27,39:929,1352:-167.517,-107.008,-98.8804,-60.8139,0,-49.0737	1/2:53:0,26,27:0:0:26,27:907,943:-128.486,-73.9921,-66.1653,-54.795,0,-46.6671	1/1:74:0,74,0:0:0:74,0:2572,0:-168.905,-22.2762,0,-168.905,-22.2762,-168.905	1/2:55:0,30,25:0:0:30,25:1049,861:-125.454,-66.1112,-57.0803,-59.6356,0,-52.1098	1/1:36:0,36,0:0:0:36,0:1283,0:-82.9968,-10.8371,0,-82.9968,-10.8371,-82.9968	1/2:231:0,103,128:0:0:103,128:3574,4523:-587.369,-357.445,-326.438,-230.234,0,-191.702	1/2:105:0,61,44:0:0:61,44:2065,1515:-244.481,-117.649,-99.2863,-127.134,0,-113.889	1/1:207:0,207,0:0:0:207,0:7263,0:-553.46,-62.3132,0,-553.46,-62.3132,-553.46	1/1:40:0,39,1:0:0:39,1:1338,36:-98.7035,-11.7402,0,-95.8504,-8.5385,-95.5493	1/2:91:0,46,45:0:0:46,45:1578,1600:-220.82,-124.782,-110.934,-96.3419,0,-82.7956	1/1:66:0,66,0:0:0:66,0:2299,0:-160.888,-19.868,0,-160.888,-19.868,-160.888	1/1:354:0,352,1:0:0:352,1:12175,36:-931.548,-105.963,0,-928.666,-103.017,-928.365	1/1:190:0,190,0:0:0:190,0:6627,0:-459.057,-57.1957,0,-459.057,-57.1957,-459.057	1/1:33:0,32,0:0:0:32,0:1117,0:-77.826,-9.63296,0,-77.826,-9.63296,-77.826	1/1:258:0,257,0:0:0:257,0:9026,0:-684.928,-77.3647,0,-684.928,-77.3647,-684.928	1/1:120:0,119,1:0:0:119,1:4158,36:-288.136,-35.8226,0,-285.328,-32.6691,-285.027	1/2:110:0,75,35:0:0:75,35:2634,1209:-266.326,-95.9264,-73.3491,-170.72,0,-160.184	1/1:5:0,5,0:0:0:5,0:167,0:-11.8282,-1.50515,0,-11.8282,-1.50515,-11.8282	1/1:10:0,10,0:0:0:10,0:331,0:-23.7664,-3.0103,0,-23.7664,-3.0103,-23.7664	1/1:3:0,3,0:0:0:3,0:95,0:-6.78766,-0.90309,0,-6.78766,-0.90309,-6.78766	1/2:15:0,13,2:0:0:13,2:461,72:-31.6951,-5.83438,-1.92099,-26.1884,0,-25.5863	1/1:7:0,7,0:0:0:7,0:250,0:-16.3552,-2.10721,0,-16.3552,-2.10721,-16.3552	1/1:213:0,212,1:0:0:212,1:7324,32:-556.348,-63.8184,0,-553.792,-60.9459,-553.491	1/1:209:0,209,0:0:0:209,0:7198,0:-501.994,-62.9153,0,-501.994,-62.9153,-501.994	1/2:48:0,19,29:0:0:19,29:664,1002:-113.632,-76.0163,-70.2967,-37.8967,0,-29.1668	1/1:2:0,2,0:0:0:2,0:70,0:-5.16707,-0.60206,0,-5.16707,-0.60206,-5.16707	1/1:158:0,158,0:0:0:158,0:5456,0:-381.022,-47.5627,0,-381.022,-47.5627,-381.022	1/1:20:0,20,0:0:0:20,0:692,0:-48.6757,-6.0206,0,-48.6757,-6.0206,-48.6757	1/1:120:0,120,0:0:0:120,0:4182,0:-292.3,-36.1236,0,-292.3,-36.1236,-292.3	1/1:83:0,83,0:0:0:83,0:2924,0:-213.427,-24.9855,0,-213.427,-24.9855,-213.427	1/2:58:0,31,27:0:0:31,27:1102,932:-144.613,-73.8494,-64.5175,-71.0773,0,-62.9495	1/1:63:0,63,0:0:0:63,0:2194,0:-169.332,-18.9649,0,-169.332,-18.9649,-169.332	1/2:137:0,75,62:0:0:75,62:2609,2163:-313.241,-164.972,-142.395,-148.564,0,-129.9	1/1:156:0,156,0:0:0:156,0:5431,0:-398.676,-46.9607,0,-398.676,-46.9607,-398.676	1/1:128:0,128,0:0:0:128,0:4538,0:-330.685,-38.5318,0,-330.685,-38.5318,-330.685	1/1:198:0,196,2:0:0:196,2:6898,72:-503.7,-59.0019,0,-497.997,-52.9488,-497.395	1/1:116:0,116,0:0:0:116,0:4066,0:-311.746,-34.9195,0,-311.746,-34.9195,-311.746	1/2:21:0,15,6:0:0:15,6:527,216:-50.956,-17.4587,-12.9432,-33.8281,0,-32.0219	1/1:92:0,92,0:0:0:92,0:3204,0:-209.768,-27.6948,0,-209.768,-27.6948,-209.768	1/1:30:0,30,0:0:0:30,0:1069,0:-82.2715,-9.0309,0,-82.2715,-9.0309,-82.2715	1/2:14:0,8,6:0:0:8,6:282,216:-32.7316,-16.8256,-14.4174,-16.2089,0,-14.4027	1/2:116:1,53,62:1:25:53,62:1804,2132:-274.479,-163.883,-149.876,-108.995,0,-92.2787	1/1:29:0,29,0:0:0:29,0:983,0:-73.5076,-8.72987,0,-73.5076,-8.72987,-73.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chr02	21064182	.	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chr02	21064292	.	A	T	20134.3	PASS	AB=0.496492;ABP=3.2693;AC=31;AF=0.164894;AN=188;AO=1211;CIGAR=1X;DP=8613;DPB=8613;DPRA=0.84244;EPP=2632.66;EPPR=16065.4;GTI=1;LEN=1;MEANALT=1.05128;MQM=59.5656;MQMR=59.5851;NS=94;NUMALT=1;ODDS=8.89464;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43361;QR=264376;RO=7397;RPL=0;RPP=2632.66;RPPR=16065.4;RPR=1211;RUN=1;SAF=0;SAP=2632.66;SAR=1211;SRF=0;SRP=16065.4;SRR=7397;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.167	0/0:107:107,0:107:3809:0:0:0,-32.2102,-342.941	0/0:120:120,0:120:4289:0:0:0,-36.1236,-386.151	0/0:161:160,1:160:5723:1:36:0,-44.8701,-511.259	0/1:89:45,44:45:1607:44:1580:-115.695,0,-117.891	0/1:78:36,42:36:1292:42:1512:-112.886,0,-93.0953	0/0:116:115,1:115:4115:1:36:0,-31.3212,-366.601	0/0:95:94,1:94:3364:1:36:0,-24.9996,-298.898	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.291	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.86	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.333	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.445	0/0:47:47,0:47:1650:0:0:0,-14.1484,-148.566	0/1:76:40,36:40:1432:36:1283:-92.8943,0,-106.29	0/1:39:22,17:22:788:17:612:-43.6671,0,-59.5046	0/1:35:20,15:20:701:15:540:-38.3912,0,-52.8711	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.08	0/1:44:19,25:19:684:25:896:-67.715,0,-48.645	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6595	0/1:228:116,111:116:4142:111:3971:-288.829,0,-304.159	0/1:115:59,56:59:2112:56:2004:-145.993,0,-155.731	0/0:287:287,0:287:10255:0:0:0,-86.3956,-922.701	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.091	0/1:109:44,65:44:1575:65:2328:-176.766,0,-109.162	0/0:61:61,0:61:2151:0:0:0,-18.3628,-193.846	0/0:296:296,0:296:10581:0:0:0,-89.1049,-951.618	0/0:150:150,0:150:5352:0:0:0,-45.1545,-481.787	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:302:302,0:302:10767:0:0:0,-90.9111,-967.952	0/0:165:165,0:165:5892:0:0:0,-49.6699,-529.755	0/1:179:82,97:82:2948:97:3467:-258.349,0,-211.545	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.213	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.397	0/0:85:84,0:84:3000:0:0:0,-25.2865,-269.866	0/0:251:251,0:251:8980:0:0:0,-75.5585,-807.813	0/1:75:27,47:27:964:47:1682:-128.934,0,-64.4375	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:179:178,1:178:6400:1:36:0,-50.2861,-572.464	0/0:36:36,0:36:1292:0:0:0,-10.8371,-115.641	0/0:116:116,0:116:4151:0:0:0,-34.9195,-373.577	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7851	0/1:26:12,14:12:432:14:504:-37.8666,0,-31.3076	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.944	0/1:95:44,51:44:1564:51:1832:-136.555,0,-111.946	0/0:130:130,0:130:4645:0:0:0,-39.1339,-417.407	0/0:127:127,0:127:4545:0:0:0,-38.2308,-409.2	0/0:137:137,0:137:4898:0:0:0,-41.2411,-440.963	0/0:195:195,0:195:7004:0:0:0,-58.7008,-629.636	0/1:28:16,12:16:576:12:428:-30.4276,0,-43.7461	0/0:192:191,0:191:6847:0:0:0,-57.4967,-615.783	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.114	0/1:22:5,17:5:180:17:608:-48.4226,0,-9.9294	0/1:125:60,65:60:2148:65:2332:-172.497,0,-155.941	0/0:19:18,1:18:644:1:32:0,-2.52026,-55.0913	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:34:21,13:21:756:13:464:-31.8625,0,-58.124	0/0:102:102,0:102:3628:0:0:0,-30.7051,-326.679	0/1:111:63,48:63:2264:48:1724:-122.026,0,-170.59	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2004	0/0:162:162,0:162:5808:0:0:0,-48.7669,-522.763	0/1:181:96,85:96:3409:85:3045:-219.588,0,-252.498	0/1:76:66,10:66:2368:10:348:-8.77686,0,-190.467	0/0:98:98,0:98:3469:0:0:0,-29.5009,-312.402	0/1:117:49,68:49:1751:68:2448:-185.347,0,-122.651	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.268	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6011	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.064	0/1:88:52,36:52:1856:36:1288:-89.7329,0,-140.827	0/0:30:30,0:30:1053:0:0:0,-9.0309,-95.0758	0/0:156:155,0:155:5544:0:0:0,-46.6596,-497.855	0/1:61:39,22:39:1400:22:780:-51.9497,0,-107.936	0/0:136:135,1:135:4810:1:36:0,-37.3418,-429.215	0/0:179:179,0:179:6427:0:0:0,-53.8844,-578.505	0/0:140:140,0:140:5012:0:0:0,-42.1442,-450.941	0/0:42:41,1:41:1457:1:36:0,-9.05403,-127.611	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6899	0/0:108:108,0:108:3852:0:0:0,-32.5112,-345.781	0/1:126:71,55:71:2544:55:1972:-139.71,0,-191.25	0/0:254:254,0:254:9087:0:0:0,-76.4616,-817.649	0/0:76:76,0:76:2703:0:0:0,-22.8783,-243.505	0/0:40:40,0:40:1431:0:0:0,-12.0412,-128.348	0/1:49:17,32:17:612:32:1148:-88.877,0,-40.6606	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.718	0/1:22:11,11:11:392:11:396:-29.3485,0,-28.9928	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.964	0/0:50:49,1:49:1744:1:21:0,-13.07,-155.236	0/0:50:50,0:50:1771:0:0:0,-15.0515,-159.668	0/1:136:63,73:63:2264:73:2612:-194.305,0,-163.078	0/1:27:9,18:9:324:18:644:-50.1581,0,-21.378	0/0:75:75,0:75:2696:0:0:0,-22.5772,-241.946	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.047
chr02	21064305	.	T	A	211904	PASS	AB=0.50489;ABP=3.51999;AC=157;AF=0.835106;AN=188;AO=7522;CIGAR=1X;DP=8745;DPB=8745;DPRA=0;EPP=33.3151;EPPR=30.844;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.5364;MQMR=59.6251;NS=94;NUMALT=1;ODDS=3.90198;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=269775;QR=43540;RO=1219;RPL=3923;RPP=33.3151;RPPR=30.844;RPR=3599;RUN=1;SAF=0;SAP=16336.8;SAR=7522;SRF=0;SRP=2650.04;SRR=1219;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1260:-113.644,-10.5361,0	1/1:106:0,106:0:0:106:3807:-342.76,-31.9092,0	1/1:123:0,123:0:0:123:4398:-395.954,-37.0267,0	1/1:164:0,164:0:0:164:5896:-530.414,-49.3689,0	0/1:89:44,45:44:1576:45:1620:-119.062,0,-115.335	0/1:79:42,37:42:1512:37:1332:-96.3928,0,-112.585	1/1:120:1,119:1:36:119:4265:-380.109,-32.5253,0	1/1:95:1,94:1:36:94:3342:-296.93,-24.9996,0	1/1:67:0,67:0:0:67:2412:-215.763,-20.169,0	1/1:112:0,112:0:0:112:4024:-362.34,-33.7154,0	1/1:65:0,65:0:0:65:2332:-210.128,-19.567,0	1/1:45:0,45:0:0:45:1609:-144.909,-13.5464,0	1/1:46:0,46:0:0:46:1652:-148.907,-13.8474,0	0/1:76:35,41:35:1256:41:1476:-110.249,0,-90.467	0/1:38:17,21:17:597:21:756:-56.9281,0,-42.6108	0/1:37:16,20:16:576:20:720:-53.9273,0,-40.9688	1/1:70:0,70:0:0:70:2508:-225.543,-21.0721,0	0/1:44:25,19:25:900:19:684:-48.645,0,-68.0757	1/1:28:0,28:0:0:28:1008:-91.02,-8.42884,0	0/1:232:116,116:116:4137:116:4172:-305.708,0,-302.519	0/1:119:56,63:56:2012:63:2260:-167.84,0,-145.508	1/1:290:0,289:0:0:289:10361:-930.425,-86.9977,0	1/1:49:0,49:0:0:49:1760:-158.679,-14.7505,0	0/1:112:69,43:69:2465:43:1548:-105.832,0,-188.182	1/1:64:0,64:0:0:64:2296:-206.882,-19.2659,0	1/1:300:0,300:0:0:300:10772:-968.843,-90.309,0	1/1:152:0,152:0:0:152:5456:-491.134,-45.7566,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:303:0,303:0:0:303:10871:-977.77,-91.2121,0	1/1:171:0,171:0:0:171:6138:-551.632,-51.4761,0	0/1:183:97,86:97:3492:86:3092:-223.292,0,-259.391	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	1/1:12:0,12:0:0:12:432:-39.213,-3.61236,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:18:0,18:0:0:18:648:-58.6355,-5.41854,0	1/1:88:0,88:0:0:88:3164:-284.974,-26.4906,0	1/1:255:0,255:0:0:255:9130:-821.296,-76.7627,0	0/1:75:48,27:48:1728:27:968:-64.8486,0,-133.08	0/1:10:6,4:6:201:4:144:-10.3033,0,-15.4067	1/1:181:1,179:1:36:179:6424:-574.62,-50.947,0	1/1:37:0,37:0:0:37:1332:-119.239,-11.1381,0	1/1:117:0,117:0:0:117:4208:-378.524,-35.2205,0	1/1:25:0,25:0:0:25:898:-81.1393,-7.52575,0	0/1:25:14,11:14:489:11:396:-28.3701,0,-36.8084	1/1:57:0,57:0:0:57:2048:-184.591,-17.1587,0	0/1:97:53,44:53:1908:44:1579:-112.756,0,-142.789	1/1:133:0,133:0:0:133:4764:-428.112,-40.037,0	1/1:130:0,130:0:0:130:4656:-419.188,-39.1339,0	1/1:141:0,141:0:0:141:5060:-455.475,-42.4452,0	1/1:201:0,201:0:0:201:7220:-649.069,-60.507,0	0/1:29:12,17:12:432:17:612:-46.5533,0,-30.489	1/1:194:0,194:0:0:194:6972:-627.217,-58.3998,0	1/1:61:0,61:0:0:61:2196:-197.903,-18.3628,0	0/1:22:17,5:17:608:5:176:-9.56236,0,-48.4247	0/1:126:65,61:65:2321:61:2196:-159.331,0,-171.205	1/1:20:1,19:1:32:19:684:-58.691,-2.82129,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:35:12,23:12:387:23:820:-63.5783,0,-24.6022	1/1:105:0,105:0:0:105:3745:-336.749,-31.6082,0	0/1:112:48,64:48:1705:64:2286:-172.263,0,-120.014	1/1:7:0,7:0:0:7:252:-23.0218,-2.10721,0	1/1:161:0,161:0:0:161:5765:-518.894,-48.4658,0	0/1:182:86,96:86:3073:96:3456:-256.423,0,-221.803	0/1:77:10,67:10:360:67:2374:-190.722,0,-9.56499	1/1:99:0,99:0:0:99:3560:-320.561,-29.802,0	0/1:121:69,52:69:2480:52:1853:-130.621,0,-187.021	1/1:142:0,142:0:0:142:5081:-456.309,-42.7463,0	1/1:22:0,22:0:0:22:792:-71.6011,-6.62266,0	1/1:85:0,85:0:0:85:3052:-274.848,-25.5876,0	0/1:90:36,54:36:1284:54:1936:-147.419,0,-88.7707	1/1:31:0,31:0:0:31:1108:-100.028,-9.33193,0	1/1:154:0,154:0:0:154:5510:-495.951,-46.3586,0	0/1:60:20,40:20:705:40:1436:-111.476,0,-45.4916	1/1:142:1,141:1:32:141:5035:-449.277,-39.5469,0	1/1:183:0,182:0:0:182:6552:-589.387,-54.7875,0	1/1:141:0,141:0:0:141:5050:-454.355,-42.4452,0	1/1:43:0,43:0:0:43:1544:-139.021,-12.9443,0	1/1:13:0,13:0:0:13:468:-42.4514,-3.91339,0	1/1:110:0,110:0:0:110:3913:-351.888,-33.1133,0	0/1:126:55,71:55:1980:71:2540:-190.892,0,-140.425	1/1:256:0,256:0:0:256:9147:-823.029,-77.0637,0	1/1:79:0,79:0:0:79:2836:-254.449,-23.7814,0	1/1:41:0,41:0:0:41:1461:-131.046,-12.3422,0	0/1:49:32,17:32:1118:17:608:-40.2992,0,-86.1707	1/1:78:0,78:0:0:78:2804:-252.563,-23.4803,0	0/1:22:11,11:11:396:11:396:-29.3555,0,-29.3485	1/1:57:0,57:0:0:57:2052:-184.922,-17.1587,0	1/1:50:0,50:0:0:50:1796:-161.241,-15.0515,0	1/1:50:0,50:0:0:50:1800:-162.278,-15.0515,0	0/1:136:72,64:72:2554:64:2304:-166.676,0,-189.156	0/1:28:18,10:18:648:10:356:-23.9505,0,-50.2183	1/1:74:0,74:0:0:74:2664:-239.495,-22.2762,0	1/1:44:0,44:0:0:44:1584:-142.847,-13.2453,0
chr02	21064311	.	G	A	164344	PASS	AB=0.498972;ABP=3.03261;AC=157;AF=0.835106;AN=188;AO=7400;CIGAR=1X;DP=8632;DPB=8632;DPRA=0;EPP=15959.2;EPPR=2652.23;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.5916;MQMR=59.6384;NS=94;NUMALT=1;ODDS=4.53443;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264929;QR=43842;RO=1228;RPL=7387;RPP=15959.2;RPPR=2652.23;RPR=13;RUN=1;SAF=0;SAP=16071.9;SAR=7400;SRF=0;SRP=2669.58;SRR=1228;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1220:-110.09,-10.235,0	1/1:105:0,105:0:0:105:3762:-338.712,-31.6082,0	1/1:122:0,122:0:0:122:4367:-393.169,-36.7257,0	1/1:163:0,163:0:0:163:5826:-524.119,-49.0679,0	0/1:89:44,45:44:1576:45:1608:-118.163,0,-115.335	0/1:77:42,35:42:1496:35:1233:-88.0846,0,-111.747	1/1:120:1,118:1:36:118:4244:-378.466,-32.5092,0	1/1:92:1,91:1:36:91:3264:-289.996,-24.0965,0	1/1:67:0,67:0:0:67:2370:-213.175,-20.169,0	1/1:111:0,111:0:0:111:3963:-356.859,-33.4143,0	1/1:62:0,62:0:0:62:2228:-200.772,-18.6639,0	1/1:45:0,45:0:0:45:1609:-144.906,-13.5464,0	1/1:46:0,46:0:0:46:1647:-148.262,-13.8474,0	0/1:78:37,41:37:1295:41:1468:-108.927,0,-93.3672	0/1:39:17,22:17:612:22:792:-59.8655,0,-43.6671	0/1:37:16,21:16:576:21:752:-56.8635,0,-41.0276	1/1:67:0,67:0:0:67:2401:-216.111,-20.169,0	0/1:44:25,19:25:887:19:684:-48.645,0,-66.9028	1/1:28:0,28:0:0:28:1004:-90.6595,-8.42884,0	0/1:230:116,114:116:4119:114:4091:-299.022,0,-301.519	0/1:120:57,63:57:2036:63:2264:-167.899,0,-147.366	1/1:287:0,287:0:0:287:10257:-922.968,-86.3956,0	1/1:49:0,49:0:0:49:1764:-159.039,-14.7505,0	0/1:111:67,44:67:2395:44:1571:-108.226,0,-182.377	1/1:61:0,61:0:0:61:2161:-194.747,-18.3628,0	1/1:295:0,294:0:0:294:10522:-946.095,-88.5028,0	1/1:151:0,151:0:0:151:5416:-487.542,-45.4555,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:297:0,297:0:0:297:10635:-956.267,-89.4059,0	1/1:169:2,167:2:72:167:5957:-529.132,-44.0373,0	0/1:178:98,80:98:3524:80:2856:-203.572,0,-263.777	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:11:0,11:0:0:11:396:-35.9745,-3.31133,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:18:0,18:0:0:18:648:-58.6355,-5.41854,0	1/1:87:0,87:0:0:87:3110:-280.121,-26.1896,0	1/1:254:0,254:0:0:254:9120:-820.398,-76.4616,0	0/1:76:48,28:48:1699:28:995:-66.9813,0,-130.21	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	1/1:179:1,178:1:32:178:6396:-572.499,-50.6851,0	1/1:37:2,35:2:72:35:1257:-105.892,-4.30139,0	1/1:116:0,116:0:0:116:4151:-373.398,-34.9195,0	1/1:24:0,24:0:0:24:864:-78.0802,-7.22472,0	0/1:26:14,12:14:496:12:421:-30.389,0,-37.1442	1/1:56:0,55:0:0:55:1953:-175.722,-16.5567,0	0/1:95:52,42:52:1847:42:1504:-106.49,0,-137.852	1/1:130:0,130:0:0:130:4644:-417.321,-39.1339,0	1/1:126:0,126:0:0:126:4512:-406.231,-37.9298,0	1/1:140:0,140:0:0:140:4999:-449.545,-42.1442,0	1/1:197:0,197:0:0:197:7059:-634.586,-59.3029,0	0/1:29:12,17:12:428:17:612:-46.5533,0,-30.1266	1/1:191:0,191:0:0:191:6842:-615.703,-57.4967,0	1/1:58:0,58:0:0:58:2088:-188.188,-17.4597,0	0/1:23:18,5:18:636:5:176:-9.26133,0,-50.6396	0/1:124:64,60:64:2287:60:2144:-155.883,0,-168.754	1/1:19:1,18:1:36:18:640:-54.331,-2.1213,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:36:13,23:13:468:23:828:-63.9989,0,-31.6226	1/1:104:0,104:0:0:104:3717:-334.702,-31.3071,0	0/1:112:50,62:50:1800:62:2218:-166.145,0,-128.562	1/1:7:0,7:0:0:7:251:-22.9312,-2.10721,0	1/1:158:0,158:0:0:158:5668:-510.169,-47.5627,0	0/1:176:83,93:83:2964:93:3340:-247.823,0,-213.917	0/1:73:10,63:10:360:63:2255:-181.23,0,-10.7691	1/1:96:0,96:0:0:96:3421:-308.093,-28.8989,0	0/1:117:68,49:68:2432:49:1751:-122.651,0,-183.908	1/1:143:0,143:0:0:143:5119:-459.73,-43.0473,0	1/1:22:0,22:0:0:22:792:-71.6011,-6.62266,0	1/1:84:0,84:0:0:84:3016:-271.593,-25.2865,0	0/1:85:34,51:34:1224:51:1832:-139.571,0,-84.8795	1/1:30:0,30:0:0:30:1072:-96.7897,-9.0309,0	1/1:152:0,152:0:0:152:5464:-491.822,-45.7566,0	0/1:59:21,38:21:744:38:1360:-104.94,0,-49.3212	1/1:139:1,138:1:36:138:4911:-437.728,-38.2449,0	1/1:181:0,181:0:0:181:6500:-585.072,-54.4864,0	1/1:138:0,138:0:0:138:4952:-445.718,-41.5421,0	1/1:41:0,41:0:0:41:1456:-131.32,-12.3422,0	1/1:13:0,13:0:0:13:468:-42.4514,-3.91339,0	1/1:109:0,109:0:0:109:3866:-347.495,-32.8123,0	0/1:128:57,71:57:2033:71:2552:-191.371,0,-144.589	1/1:251:1,250:1:36:250:8957:-802.361,-71.9603,0	1/1:78:0,78:0:0:78:2800:-252.23,-23.4803,0	1/1:40:0,40:0:0:40:1440:-129.159,-12.0412,0	0/1:49:32,17:32:1148:17:604:-39.9378,0,-88.877	1/1:77:0,77:0:0:77:2748:-247.527,-23.1793,0	0/1:22:11,11:11:392:11:396:-29.3555,0,-28.9907	1/1:58:0,58:0:0:58:2076:-187.084,-17.4597,0	1/1:48:0,48:0:0:48:1728:-155.752,-14.4494,0	1/1:49:0,49:0:0:49:1760:-158.679,-14.7505,0	0/1:137:74,63:74:2648:63:2268:-163.136,0,-197.202	0/1:30:19,11:19:680:11:396:-26.9472,0,-52.4936	1/1:74:0,74:0:0:74:2649:-238.634,-22.2762,0	1/1:43:0,43:0:0:43:1544:-139.248,-12.9443,0
chr02	21064334	.	T	C	20153.4	PASS	AB=0.493868;ABP=3.80929;AC=31;AF=0.164894;AN=188;AO=1218;CIGAR=1X;DP=8695;DPB=8695;DPRA=0.973486;EPP=2647.86;EPPR=16234.8;GTI=1;LEN=1;MEANALT=1.025;MQM=59.6511;MQMR=59.571;NS=94;NUMALT=1;ODDS=8.12899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43611;QR=267577;RO=7475;RPL=1218;RPP=2647.86;RPPR=16234.8;RPR=0;RUN=1;SAF=0;SAP=2647.86;SAR=1218;SRF=0;SRP=16234.8;SRR=7475;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.59	0/0:109:109,0:109:3878:0:0:0,-32.8123,-349.148	0/0:122:122,0:122:4388:0:0:0,-36.7257,-395.056	0/0:161:161,0:161:5776:0:0:0,-48.4658,-519.935	0/1:86:44,42:44:1576:42:1508:-110.121,0,-116.234	0/1:80:38,42:38:1360:42:1512:-112.284,0,-98.61	0/0:121:120,1:120:4300:1:36:0,-32.8264,-383.401	0/0:96:95,1:95:3389:1:36:0,-25.3006,-301.342	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.031	0/0:113:113,0:113:4030:0:0:0,-34.0164,-362.879	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.488	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.141	0/0:49:49,0:49:1743:0:0:0,-14.7505,-156.737	0/1:77:40,37:40:1436:37:1320:-95.9226,0,-106.349	0/1:39:22,17:22:792:17:612:-43.6671,0,-59.8655	0/1:37:21,16:21:756:16:576:-41.0276,0,-57.2245	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.551	0/1:44:19,25:19:684:25:896:-67.715,0,-48.645	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7816	0/1:233:116,117:116:4168:117:4162:-304.468,0,-305.046	0/1:120:63,57:63:2260:57:2044:-148.086,0,-167.539	0/0:288:288,0:288:10302:0:0:0,-86.6966,-925.634	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.449	0/1:108:44,64:44:1557:64:2300:-174.735,0,-107.86	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.643	0/0:298:298,0:298:10662:0:0:0,-89.7069,-958.901	0/0:149:149,0:149:5285:0:0:0,-44.8535,-475.763	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:294:292,2:292:10469:2:72:0,-81.668,-934.655	0/0:168:167,1:167:5992:1:36:0,-46.9799,-535.059	0/1:183:87,96:87:3105:96:3452:-255.795,0,-224.511	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.213	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4052	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.212	0/0:257:257,0:257:9205:0:0:0,-77.3647,-828.047	0/1:74:28,46:28:1008:46:1644:-125.895,0,-68.7486	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:181:180,1:180:6468:1:36:0,-50.8882,-578.579	0/0:37:36,1:36:1292:1:36:0,-7.53983,-112.352	0/0:116:116,0:116:4176:0:0:0,-34.9195,-375.65	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7195	0/1:24:11,13:11:396:13:468:-35.2326,0,-28.6711	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.24	0/1:95:43,52:43:1544:52:1853:-138.443,0,-110.147	0/0:133:133,0:133:4730:0:0:0,-40.037,-425.338	0/0:129:129,0:129:4598:0:0:0,-38.8329,-413.968	0/0:141:141,0:141:5026:0:0:0,-42.4452,-452.349	0/0:195:195,0:195:6993:0:0:0,-58.7008,-628.65	0/1:29:17,12:17:608:12:432:-30.489,0,-46.1919	0/0:193:193,0:193:6913:0:0:0,-58.0988,-621.942	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.305	0/1:23:5,18:5:180:18:632:-50.2751,0,-9.62837	0/1:125:58,67:58:2080:67:2378:-176.627,0,-149.837	0/0:18:18,0:18:618:0:0:0,-5.41854,-55.9382	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:36:23,13:23:805:13:468:-31.6226,0,-61.9222	0/0:106:106,0:106:3788:0:0:0,-31.9092,-340.664	0/1:111:63,48:63:2234:48:1728:-122.386,0,-167.802	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0218	0/0:155:155,0:155:5500:0:0:0,-46.6596,-495.065	0/1:181:96,85:96:3448:85:3045:-219.59,0,-256.022	0/1:76:66,10:66:2372:10:356:-9.50297,0,-190.828	0/0:96:96,0:96:3425:0:0:0,-28.8989,-308.417	0/1:122:52,70:52:1872:70:2497:-188.249,0,-132.031	0/0:143:143,0:143:5140:0:0:0,-43.0473,-461.617	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6011	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.191	0/1:89:54,35:54:1928:35:1256:-86.5536,0,-147	0/0:31:31,0:31:1086:0:0:0,-9.33193,-98.0423	0/0:154:154,0:154:5502:0:0:0,-46.3586,-494.449	0/1:61:40,21:40:1440:21:748:-49.0801,0,-111.535	0/0:143:142,1:142:5069:1:36:0,-39.449,-451.925	0/0:180:180,0:180:6434:0:0:0,-54.1854,-579.135	0/0:141:141,0:141:5048:0:0:0,-42.4452,-454.153	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.677	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0893	0/0:107:106,1:106:3812:1:36:0,-28.617,-338.596	0/1:126:71,54:71:2556:54:1944:-137.175,0,-192.314	0/0:259:258,0:258:9230:0:0:0,-77.6657,-830.112	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.59	0/0:40:40,0:40:1436:0:0:0,-12.0412,-128.799	0/1:49:17,32:17:612:32:1152:-89.2373,0,-40.6606	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.316	0/1:21:10,11:10:360:11:392:-29.2918,0,-26.4227	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.922	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.639	0/0:50:49,1:49:1760:1:36:0,-11.4583,-155.091	0/1:135:64,71:64:2300:71:2544:-188.562,0,-166.617	0/1:29:11,18:11:396:18:648:-49.9173,0,-27.2482	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.215	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.495
chr02	21070248	.	C	T	98995	PASS	AB=0.567371;ABP=383.378;AC=93;AF=0.494681;AN=188;AO=5593;CIGAR=1X;DP=9804;DPB=9804;DPRA=15.0492;EPP=12148.1;EPPR=9144.91;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.7163;MQMR=26.0475;NS=94;NUMALT=1;ODDS=62.9539;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200116;QR=150552;RO=4210;RPL=0;RPP=12148.1;RPPR=9144.91;RPR=5593;RUN=1;SAF=5593;SAP=12148.1;SAR=0;SRF=4210;SRP=9144.91;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:10,57:10:356:57:2052:-164.774,0,-3.06443	0/1:103:56,47:56:1996:47:1667:-119.307,0,-97.9569	0/1:95:20,75:20:720:75:2680:-212.843,0,-18.5691	0/1:211:110,101:110:3925:101:3608:-261.396,0,-190.216	0/1:89:47,42:47:1688:42:1512:-109.446,0,-81.6471	0/1:104:36,68:36:1261:68:2431:-187.734,0,-51.0778	0/1:127:76,51:76:2716:51:1832:-126.814,0,-136.789	0/1:139:41,98:41:1456:98:3494:-272.819,0,-52.5771	0/1:189:55,134:55:1968:134:4808:-375.978,0,-69.8662	0/1:105:35,70:35:1252:70:2508:-194.36,0,-49.1462	0/1:85:43,42:43:1540:42:1508:-110.308,0,-73.5895	0/1:141:68,73:68:2439:73:2610:-192.694,0,-114.212	0/1:129:61,68:61:2188:68:2433:-180.387,0,-101.795	0/1:110:57,53:57:2048:53:1874:-135.81,0,-98.3539	0/1:87:31,56:31:1116:56:2008:-154.794,0,-45.4542	0/1:123:60,63:60:2160:63:2252:-165.916,0,-101.399	0/1:167:129,38:129:4612:38:1349:-71.4332,0,-246.648	0/1:87:57,30:57:2048:30:1076:-70.9632,0,-106.129	0/1:51:19,32:19:684:32:1129:-86.5623,0,-28.6572	0/1:145:107,38:107:3832:38:1364:-79.4047,0,-202.759	0/1:156:54,102:54:1940:102:3648:-281.528,0,-77.598	0/1:44:10,34:10:360:34:1220:-96.8569,0,-10.0389	1/1:133:15,118:15:536:118:4240:-346.961,-5.28918,0	0/1:74:26,48:26:928:48:1720:-132.803,0,-37.7525	0/1:66:40,26:40:1409:26:932:-64.3309,0,-71.7789	0/1:176:69,107:69:2456:107:3826:-291.543,0,-106.755	0/1:149:54,95:54:1920:95:3396:-260.995,0,-79.4535	0/1:65:28,37:28:1008:37:1324:-99.8951,0,-45.1683	0/1:203:66,137:66:2357:137:4892:-379.306,0,-90.5633	0/1:101:55,46:55:1964:46:1629:-116.401,0,-97.244	0/1:114:31,83:31:1112:83:2976:-233.669,0,-37.276	0/1:12:8,4:8:288:4:144:-9.5925,0,-15.0662	0/1:4:1,3:1:36:3:108:-8.87105,0,-1.35459	0/1:10:7,3:7:248:3:108:-7.06487,0,-13.3144	0/0:16:15,1:15:536:1:36:0,-1.2182,-31.1495	0/1:10:5,5:5:180:5:176:-13.1747,0,-8.75975	0/1:322:166,156:166:5960:156:5604:-407.529,0,-285.394	0/1:74:16,58:16:576:58:2088:-165.893,0,-14.825	0/1:73:30,43:30:1076:43:1532:-116.198,0,-48.2544	0/1:8:7,1:7:252:1:36:-1.19004,0,-13.9675	0/1:103:40,63:40:1416:63:2264:-173.012,0,-61.061	0/1:45:20,25:20:720:25:888:-66.6903,0,-32.7662	0/1:140:32,108:32:1148:108:3849:-304.45,0,-31.752	0/1:127:49,78:49:1760:78:2781:-212.096,0,-74.8137	0/1:151:87,63:87:3045:63:2252:-157.45,0,-152.437	0/1:92:19,73:19:684:73:2608:-207.267,0,-16.315	0/1:85:20,65:20:716:65:2324:-183.83,0,-20.6745	0/1:168:68,100:68:2432:100:3566:-270.552,0,-106.074	0/1:73:16,57:16:576:57:2044:-162.237,0,-15.1261	0/1:68:44,24:44:1564:24:864:-57.6125,0,-80.8588	0/1:89:34,55:34:1208:55:1964:-150.234,0,-51.559	0/1:8:6,2:6:216:2:72:-4.42848,0,-11.6646	0/1:84:55,29:55:1972:29:1044:-68.9867,0,-102.376	0/1:67:27,40:27:956:40:1432:-109.004,0,-42.0617	0/1:3:2,1:2:72:1:36:-2.69518,0,-3.95845	0/1:142:38,104:38:1368:104:3740:-294.039,0,-45.0174	0/1:32:9,23:9:320:23:813:-63.8537,0,-11.2976	0/1:9:8,1:8:288:1:36:-0.889005,0,-15.9693	0/1:24:20,4:20:712:4:144:-6.0889,0,-38.9869	0/1:155:87,68:87:3096:68:2435:-172.657,0,-153.49	0/1:174:123,51:123:4404:51:1832:-112.778,0,-230.824	0/0:7:7,0:7:248:0:0:0,-2.10721,-16.3247	0/1:127:56,71:56:2008:71:2544:-190.34,0,-90.8832	0/1:238:68,170:68:2444:170:6103:-477.702,0,-85.1533	0/1:74:44,30:44:1572:30:1076:-74.8743,0,-79.1534	0/1:83:14,69:14:504:69:2476:-198.091,0,-7.51008	0/1:201:51,150:51:1828:150:5380:-423.741,0,-57.0928	0/1:91:21,70:21:744:70:2516:-199.288,0,-21.0702	0/1:75:48,27:48:1701:27:968:-64.855,0,-87.543	0/1:75:32,43:32:1148:43:1540:-116.314,0,-51.319	0/1:148:115,33:115:4136:33:1179:-61.7546,0,-220.479	0/1:26:9,17:9:324:17:607:-47.1348,0,-13.1546	0/1:49:27,22:27:968:22:784:-56.1319,0,-47.6315	0/1:62:10,52:10:360:52:1853:-148.372,0,-4.62037	0/1:258:113,145:113:4040:145:5196:-389.554,0,-182.459	0/1:133:33,100:33:1184:100:3564:-280.714,0,-36.1621	0/1:86:52,34:52:1860:34:1186:-81.15,0,-93.9637	0/1:144:69,75:69:2476:75:2688:-198.813,0,-115.703	0/1:11:2,9:2:72:9:309:-24.8278,0,-1.55021	0/1:145:63,82:63:2260:82:2940:-221.174,0,-101.585	0/1:102:52,50:52:1868:50:1792:-130.851,0,-89.2479	0/1:244:77,167:77:2764:167:5968:-463.705,0,-104.022	0/1:131:60,71:60:2156:71:2529:-188.422,0,-98.9408	0/1:133:63,70:63:2249:70:2512:-186.277,0,-104.727	0/1:103:45,58:45:1616:58:2083:-156.721,0,-73.4187	0/1:194:73,121:73:2609:121:4313:-329.936,0,-109.392	0/1:32:16,16:16:576:16:572:-42.1774,0,-27.4683	0/1:97:34,63:34:1220:63:2268:-175.179,0,-49.302	0/1:92:38,54:38:1360:54:1923:-145.58,0,-59.9681	0/1:65:41,24:41:1468:24:864:-58.5156,0,-75.0045	0/1:134:64,70:64:2284:70:2520:-186.704,0,-107.048	0/1:75:17,58:17:608:58:2061:-163.177,0,-16.7763	0/1:142:56,86:56:2000:86:3084:-234.986,0,-86.2671	0/1:224:115,109:115:4077:109:3900:-283.603,0,-196.119
chr02	21070254	.	C	T	28165.9	PASS	AB=0.430912;ABP=405.372;AC=95;AF=0.505319;AN=188;AO=4219;CIGAR=1X;DP=9865;DPB=9865;DPRA=0;EPP=9164.45;EPPR=12241.4;GTI=3;LEN=1;MEANALT=1.10638;MQM=26.0251;MQMR=59.7204;NS=94;NUMALT=1;ODDS=58.6648;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151104;QR=201637;RO=5636;RPL=0;RPP=9164.45;RPPR=12241.4;RPR=4219;RUN=1;SAF=4219;SAP=9164.45;SAR=0;SRF=5636;SRP=12241.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:58,9:58:2076:9:324:-0.812384,0,-166.934	0/1:104:48,56:48:1716:56:1993:-97.2864,0,-123.411	0/1:93:73,20:73:2608:20:720:-19.1711,0,-206.969	0/1:212:103,109:103:3675:109:3904:-187.195,0,-267.12	0/1:93:45,48:45:1604:48:1720:-82.6955,0,-116.589	0/1:102:66,36:66:2372:36:1281:-51.9318,0,-183.028	0/1:126:52,74:52:1849:74:2660:-132.686,0,-128.642	0/1:144:101,42:101:3616:42:1470:-52.5239,0,-282.381	0/1:189:136,52:136:4849:52:1860:-63.0028,0,-379.711	0/1:105:71,34:71:2516:34:1201:-46.3222,0,-195.079	0/1:87:42,45:42:1504:45:1596:-76.9817,0,-109.344	0/1:142:73,69:73:2612:69:2480:-116.355,0,-192.575	0/1:130:70,60:70:2484:60:2156:-99.2418,0,-184.675	0/1:114:57,57:57:2044:57:2037:-96.6796,0,-149.903	0/1:90:57,33:57:2048:33:1188:-49.1568,0,-157.487	0/1:123:63,60:63:2251:60:2152:-101.299,0,-165.826	0/1:167:38,129:38:1359:129:4625:-246.479,0,-72.3347	0/1:87:30,57:30:1080:57:2040:-105.177,0,-71.2373	0/1:51:32,19:32:1148:19:684:-28.6572,0,-88.2758	0/1:143:38,105:38:1360:105:3772:-198.906,0,-79.6466	0/1:154:100,53:100:3561:53:1904:-75.8406,0,-274.215	0/1:44:34,10:34:1216:10:360:-10.0389,0,-96.4966	0/0:137:122,15:122:4368:15:521:0,-7.01664,-358.94	0/1:75:49,26:49:1760:26:936:-37.5524,0,-136.099	0/1:66:27,39:27:968:39:1388:-69.997,0,-67.567	0/1:175:106,69:106:3785:69:2480:-106.421,0,-288.15	0/1:148:95,53:95:3412:53:1896:-77.6027,0,-262.604	0/1:65:38,27:38:1364:27:968:-42.8151,0,-103.494	0/1:202:135,66:135:4819:66:2357:-90.8076,0,-372.983	0/1:101:49,52:49:1752:52:1845:-88.9277,0,-127.385	0/1:117:86,31:86:3080:31:1112:-36.3729,0,-242.118	0/1:12:4,8:4:140:8:288:-15.0662,0,-9.28525	0/1:4:3,1:3:108:1:36:-1.35459,0,-8.87105	0/1:10:3,7:3:108:7:252:-13.3654,0,-7.06487	1/1:16:1,15:1:36:15:517:-30.5756,-1.21821,0	0/1:10:5,5:5:180:5:176:-8.7084,0,-13.5418	0/1:327:160,167:160:5744:167:5987:-286.001,0,-418.618	0/1:75:58,17:58:2076:17:612:-16.8268,0,-164.514	0/1:75:44,30:44:1554:30:1076:-46.8143,0,-117.672	0/1:9:1,8:1:36:8:288:-15.9693,0,-0.889005	0/1:104:62,41:62:2232:41:1464:-63.3154,0,-169.932	0/1:45:25,20:25:888:20:720:-32.7662,0,-66.6917	0/1:145:112,32:112:4000:32:1148:-30.348,0,-316.631	0/1:129:80,49:80:2876:49:1764:-74.262,0,-220.037	0/1:152:64,88:64:2291:88:3128:-156.236,0,-160.614	0/1:91:72,19:72:2584:19:684:-16.616,0,-205.41	0/1:88:67,21:67:2408:21:756:-22.1248,0,-190.482	0/1:171:100,71:100:3569:71:2544:-112.13,0,-269.921	0/1:73:57,16:57:2040:16:557:-14.5524,0,-161.879	0/1:69:24,45:24:864:45:1616:-83.0621,0,-57.3115	0/1:91:56,35:56:2012:35:1252:-53.3606,0,-153.95	0/1:8:2,6:2:72:6:216:-11.6646,0,-4.42848	0/1:85:29,56:29:1040:56:2016:-104.478,0,-68.3253	0/1:69:41,27:41:1464:27:968:-41.7003,0,-111.368	0/1:3:1,2:1:36:2:72:-3.95845,0,-2.69518	0/1:143:105,38:105:3730:38:1368:-44.7163,0,-292.841	0/1:32:22,9:22:784:9:324:-11.3004,0,-61.1927	0/1:9:1,8:1:36:8:288:-15.9693,0,-0.889005	0/1:24:4,20:4:144:20:716:-39.0374,0,-6.0889	0/1:156:69,87:69:2476:87:3124:-153.541,0,-176.061	0/1:176:51,125:51:1828:125:4492:-235.029,0,-111.816	1/1:7:0,7:0:0:7:237:-15.848,-2.10721,0	0/1:125:67,58:67:2412:58:2080:-96.0909,0,-179.071	0/1:236:168,68:168:6015:68:2432:-85.6044,0,-470.395	0/1:77:31,46:31:1116:46:1637:-82.4359,0,-77.57	0/1:83:69,14:69:2464:14:500:-7.45946,0,-197.012	0/1:201:152,49:152:5448:49:1764:-52.5878,0,-429.895	0/1:92:71,21:71:2552:21:752:-20.8702,0,-202.225	0/1:73:26,47:26:932:47:1688:-86.4636,0,-62.219	0/1:79:45,34:45:1608:34:1201:-54.1489,0,-121.228	0/1:148:33,115:33:1180:115:4136:-220.479,0,-61.8448	0/1:27:18,9:18:644:9:324:-12.8536,0,-50.1628	0/1:48:21,27:21:756:27:960:-47.8317,0,-53.9178	0/1:62:52,10:52:1864:10:360:-4.62037,0,-149.327	0/1:256:143,112:143:5116:112:4016:-181.011,0,-382.856	0/1:131:98,33:98:3508:33:1188:-36.8145,0,-276.329	0/1:88:35,53:35:1252:53:1904:-95.7652,0,-86.4913	0/1:145:75,70:75:2688:70:2493:-117.134,0,-198.512	0/1:11:9,2:9:324:2:72:-1.55021,0,-26.193	0/1:147:84,63:84:2984:63:2252:-100.882,0,-224.529	0/1:101:49,52:49:1760:52:1868:-89.549,0,-128.273	0/1:243:167,76:167:5972:76:2724:-101.97,0,-464.361	0/1:133:73,60:73:2628:60:2141:-97.8183,0,-196.726	0/1:132:68,64:68:2439:64:2296:-108.735,0,-180.017	0/1:104:58,46:58:2067:46:1656:-75.7308,0,-154.98	0/1:195:121,74:121:4323:74:2656:-112.798,0,-330.539	0/1:32:16,16:16:576:16:576:-27.4683,0,-42.5389	0/1:99:65,34:65:2323:34:1224:-48.7503,0,-179.524	0/1:95:56,39:56:1991:39:1404:-61.4686,0,-150.85	0/1:66:24,42:24:851:42:1500:-76.9559,0,-57.0415	0/1:134:71,63:71:2548:63:2264:-104.946,0,-189.223	0/1:75:58,17:58:2076:17:608:-16.7763,0,-164.532	0/1:146:88,58:88:3145:58:2084:-89.8196,0,-239.268	0/1:220:108,112:108:3863:112:4028:-191.897,0,-281.586
chr02	21132290	.	CAA	AAG,AAA	182036	PASS	AB=0.521574,0.474196;ABP=12.567,16.6821;AC=158,30;AF=0.840426,0.159574;AN=188;AO=7159,1129;CIGAR=1X1M1X,1X2M;DP=8324;DPB=8324.67;DPRA=0,0.890454;EPP=15487.8,2454.6;EPPR=7.35324;GTI=2;LEN=3,1;MEANALT=1.69149,2.30556;MQM=53.8486,59.9965;MQMR=60;NS=94;NUMALT=2;ODDS=3.48072;PAIRED=0,0;PAIREDR=0;PAO=1,0.5;PQA=36,0;PQR=0;PRO=0.5;QA=254301,40133;QR=70;RO=2;RPL=7,0;RPP=15487.8,2454.6;RPPR=7.35324;RPR=7152,1129;RUN=1,1;SAF=7159,1129;SAP=15548.6,2454.6;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39,0:0:0:39,0:1371,0:-123.053,-11.7402,0,-123.053,-11.7402,-123.053	1/1:110:0,110,0:0:0:110,0:3909,0:-349.64,-33.1133,0,-349.64,-33.1133,-349.64	1/1:165:0,165,0:0:0:165,0:5862,0:-523.628,-49.67,0,-523.628,-49.67,-523.628	1/1:168:0,166,0:0:0:166,0:5895,0:-529.254,-49.971,0,-529.254,-49.971,-529.254	1/2:59:0,42,17:0:0:42,17:1495,604:-171.11,-49.5731,-36.9298,-121.892,0,-116.775	1/2:52:0,24,27:0:0:24,27:859,956:-147.742,-77.9455,-70.7208,-69.8677,0,-61.7399	1/1:188:0,188,0:0:0:188,0:6701,0:-601.661,-56.5936,0,-601.661,-56.5936,-601.661	1/1:125:0,125,0:0:0:125,0:4434,0:-397.42,-37.6288,0,-397.42,-37.6288,-397.42	1/1:107:0,107,0:0:0:107,0:3840,0:-342.962,-32.2102,0,-342.962,-32.2102,-342.962	1/1:73:0,73,0:0:0:73,0:2579,0:-231.928,-21.9752,0,-231.928,-21.9752,-231.928	1/1:113:0,113,0:0:0:113,0:4002,0:-359.913,-34.0164,0,-359.913,-34.0164,-359.913	1/1:95:0,95,0:0:0:95,0:3378,0:-302.162,-28.5979,0,-302.162,-28.5979,-302.162	1/1:105:0,105,0:0:0:105,0:3730,0:-334.101,-31.6082,0,-334.101,-31.6082,-334.101	1/2:113:0,59,54:0:0:59,54:2103,1932:-328.562,-157.901,-140.14,-171.017,0,-154.761	1/2:84:0,53,31:0:0:53,31:1873,1116:-243.829,-91.4198,-75.4652,-152.767,0,-143.435	1/2:79:0,36,43:0:0:36,43:1256,1528:-226.718,-124.869,-114.032,-102.201,0,-89.2564	1/1:126:0,126,0:0:0:126,0:4461,0:-399.306,-37.9298,0,-399.306,-37.9298,-399.306	1/2:64:0,36,27:0:0:36,27:1264,960:-180.656,-78.2491,-67.412,-102.42,0,-94.2925	1/1:54:0,54,0:0:0:54,0:1911,0:-170.55,-16.2556,0,-170.55,-16.2556,-170.55	1/2:105:0,51,53:0:0:51,53:1825,1884:-302.241,-153.675,-138.322,-148.712,0,-132.757	1/2:136:0,74,62:0:0:74,62:2657,2213:-395.973,-180.769,-158.493,-215.56,0,-196.896	1/1:82:0,82,0:0:0:82,0:2913,0:-262.101,-24.6845,0,-262.101,-24.6845,-262.101	1/1:58:0,58,0:0:0:58,0:2039,0:-183.271,-17.4597,0,-183.271,-17.4597,-183.271	1/2:93:0,45,48:0:0:45,48:1611,1683:-268.353,-137.302,-123.756,-131.405,0,-116.955	1/1:63:0,63,0:0:0:63,0:2238,0:-200.751,-18.9649,0,-200.751,-18.9649,-200.751	1/1:260:0,258,0:0:0:258,0:9106,0:-818.528,-77.6657,0,-818.528,-77.6657,-818.528	1/1:184:0,183,0:0:0:183,0:6533,0:-586.039,-55.0885,0,-586.039,-55.0885,-586.039	1/1:59:0,59,0:0:0:59,0:2092,0:-188.148,-17.7608,0,-188.148,-17.7608,-188.148	1/1:182:0,182,0:0:0:182,0:6453,0:-579.452,-54.7875,0,-579.452,-54.7875,-579.452	1/1:63:0,62,0:0:0:62,0:2191,0:-196.162,-18.6639,0,-196.162,-18.6639,-196.162	1/2:117:0,59,58:0:0:59,58:2095,2007:-333.06,-163.435,-145.675,-169.974,0,-152.514	1/1:5:0,5,0:0:0:5,0:180,0:-16.5224,-1.50515,0,-16.5224,-1.50515,-16.5224	1/1:7:0,7,0:0:0:7,0:250,0:-22.7857,-2.10721,0,-22.7857,-2.10721,-22.7857	1/1:3:0,3,0:0:0:3,0:104,0:-9.40759,-0.90309,0,-9.40759,-0.90309,-9.40759	1/2:7:0,6,1:0:0:6,1:214,36:-20.6929,-3.29724,-1.49106,-17.7549,0,-17.4538	1/1:3:0,3,0:0:0:3,0:108,0:-10.0498,-0.90309,0,-10.0498,-0.90309,-10.0498	1/1:246:0,244,0:0:0:244,0:8679,0:-779.432,-73.4513,0,-779.432,-73.4513,-779.432	1/1:116:0,116,0:0:0:116,0:4134,0:-370.181,-34.9195,0,-370.181,-34.9195,-370.181	1/2:108:0,57,51:0:0:57,51:2032,1824:-313.918,-149.089,-131.93,-165.186,0,-149.833	1/2:4:0,1,3:0:0:1,3:31,108:-11.6466,-9.17208,-8.87105,-2.7968,0,-1.89371	1/1:112:0,112,0:0:0:112,0:3976,0:-356.553,-33.7154,0,-356.553,-33.7154,-356.553	1/1:52:0,52,0:0:0:52,0:1860,0:-166.253,-15.6536,0,-166.253,-15.6536,-166.253	1/1:83:0,83,0:0:0:83,0:2955,0:-264.044,-24.9855,0,-264.044,-24.9855,-264.044	1/1:105:0,105,0:0:0:105,0:3740,0:-335.86,-31.6082,0,-335.86,-31.6082,-335.86	1/2:76:0,34,41:0:0:34,41:1218,1446:-216.855,-117.769,-107.534,-99.1202,0,-86.7779	1/1:95:0,95,0:0:0:95,0:3356,0:-301.763,-28.5979,0,-301.763,-28.5979,-301.763	1/2:104:0,62,42:0:0:62,42:2190,1493:-299.785,-122.019,-103.355,-178.119,0,-165.476	1/1:147:0,147,0:0:0:147,0:5195,0:-466.292,-44.2514,0,-466.292,-44.2514,-466.292	1/1:79:0,79,0:0:0:79,0:2818,0:-253.587,-23.7814,0,-253.587,-23.7814,-253.587	1/1:107:0,104,0:0:0:104,0:3682,0:-330.649,-31.3071,0,-330.649,-31.3071,-330.649	1/1:103:0,103,0:0:0:103,0:3673,0:-330.386,-31.0061,0,-330.386,-31.0061,-330.386	1/2:9:0,5,4:0:0:5,4:180,144:-26.7848,-12.1095,-10.6043,-15.035,0,-13.8309	1/1:108:0,108,0:0:0:108,0:3862,0:-344.839,-32.5112,0,-344.839,-32.5112,-344.839	1/1:32:0,32,0:0:0:32,0:1127,0:-101.448,-9.63296,0,-101.448,-9.63296,-101.448	1/2:16:0,6,10:0:0:6,10:216,360:-47.3012,-29.734,-27.9278,-17.9264,0,-14.9161	1/2:85:0,45,39:0:0:45,39:1612,1400:-245.301,-114.28,-100.733,-131.099,0,-119.359	1/1:51:0,51,0:0:0:51,0:1808,0:-161.192,-15.3525,0,-161.192,-15.3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chr02	21132323	.	CGA	TGC,TGA	202837	PASS	AB=0.353077,0.6449;ABP=651.935,634.192;AC=158,30;AF=0.840426,0.159574;AN=188;AO=7094,2250;CIGAR=1X1M1X,1X2M;DP=9385;DPB=9388;DPRA=0,1.28712;EPP=15398.8,4888.82;EPPR=11.6962;GTI=7;LEN=3,1;MEANALT=1.82979,2.28889;MQM=53.7976,45.2378;MQMR=60;NS=94;NUMALT=2;ODDS=0.918133;PAIRED=0,0;PAIREDR=0;PAO=4.5,4.5;PQA=149,149;PQR=0;PRO=0;QA=246354,74523;QR=138;RO=4;RPL=7088,1110;RPP=15355.4,3.87889;RPPR=3.0103;RPR=6,1140;RUN=1,1;SAF=7087,1110;SAP=15346.7,3.87889;SAR=7,1140;SRF=2;SRP=3.0103;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39,0:0:0:39,0:1355,0:-121.779,-11.7402,0,-121.779,-11.7402,-121.779	1/1:110:0,110,0:0:0:110,0:3811,0:-340.473,-33.1133,0,-340.473,-33.1133,-340.473	1/1:164:0,160,0:0:0:160,0:5564,0:-496.655,-48.1648,0,-496.655,-48.1648,-496.655	1/1:166:0,166,0:0:0:166,0:5837,0:-524.288,-49.971,0,-524.288,-49.971,-524.288	1/2:108:0,41,67:0:0:41,67:1434,2088:-271.545,-155.133,-142.791,-116.738,0,-96.5694	1/2:84:0,25,59:0:0:25,59:884,1830:-209.894,-138.08,-130.554,-72.1492,0,-54.3885	1/1:186:0,184,0:0:0:184,0:6407,0:-575.18,-55.3895,0,-575.18,-55.3895,-575.18	1/1:125:0,124,0:0:0:124,0:4289,0:-384.493,-37.3277,0,-384.493,-37.3277,-384.493	1/1:107:0,106,1:0:0:106,1:3742,28:-334.167,-31.9092,0,-332.219,-29.7109,-331.918	1/1:73:0,72,0:0:0:72,0:2487,0:-223.599,-21.6742,0,-223.599,-21.6742,-223.599	1/1:112:0,112,0:0:0:112,0:3937,0:-354.096,-33.7154,0,-354.096,-33.7154,-354.096	1/1:94:0,94,0:0:0:94,0:3232,0:-289.819,-28.2968,0,-289.819,-28.2968,-289.819	1/1:104:0,104,0:0:0:104,0:3593,0:-322.219,-31.3071,0,-322.219,-31.3071,-322.219	1/2:156:0,58,98:0:0:58,98:2013,3213:-410.751,-247.725,-230.265,-163.36,0,-133.859	1/2:114:0,53,61:0:0:53,61:1857,2046:-308.98,-157.982,-142.027,-151.334,0,-132.971	1/2:103:0,33,69:0:0:33,69:1142,2317:-273.25,-180.718,-170.784,-92.6075,0,-71.8364	1/1:126:0,125,0:0:0:125,0:4368,0:-391.445,-37.6288,0,-391.445,-37.6288,-391.445	1/2:89:0,37,52:0:0:37,52:1269,1665:-230.499,-127.966,-116.828,-102.859,0,-87.2056	1/1:53:0,53,0:0:0:53,0:1872,0:-167.208,-15.9546,0,-167.208,-15.9546,-167.208	1/2:185:0,53,132:0:0:53,132:1838,4468:-489.935,-340.874,-324.919,-149.399,0,-109.663	1/2:209:0,74,135:0:0:74,135:2531,4393:-539.41,-335.18,-312.904,-204.559,0,-163.92	1/1:82:0,81,0:0:0:81,0:2848,0:-256.001,-24.3834,0,-256.001,-24.3834,-256.001	1/1:57:0,55,1:0:0:55,1:1882,33:-168.965,-16.5567,0,-166.568,-14.1786,-166.267	1/2:111:0,45,66:0:0:45,66:1556,2245:-303.489,-177.3,-163.753,-126.528,0,-106.66	1/1:62:0,61,0:0:0:61,0:2110,0:-189.354,-18.3628,0,-189.354,-18.3628,-189.354	1/1:259:0,258,0:0:0:258,0:8920,0:-801.892,-77.6657,0,-801.892,-77.6657,-801.892	1/1:184:0,183,0:0:0:183,0:6382,0:-572.536,-55.0885,0,-572.536,-55.0885,-572.536	1/1:59:0,59,0:0:0:59,0:2040,0:-183.509,-17.7608,0,-183.509,-17.7608,-183.509	1/1:181:0,176,0:0:0:176,0:6139,0:-551.577,-52.9813,0,-551.577,-52.9813,-551.577	1/1:62:0,62,0:0:0:62,0:2166,0:-194.355,-18.6639,0,-194.355,-18.6639,-194.355	1/2:180:0,57,123:0:0:57,123:2011,4141:-479.899,-316.846,-299.687,-163.394,0,-126.368	1/1:5:0,5,0:0:0:5,0:164,0:-15.0662,-1.50515,0,-15.0662,-1.50515,-15.0662	1/1:7:0,7,0:0:0:7,0:250,0:-22.7792,-2.10721,0,-22.7792,-2.10721,-22.7792	1/1:3:0,3,0:0:0:3,0:97,0:-8.82528,-0.90309,0,-8.82528,-0.90309,-8.82528	1/2:11:0,6,5:0:0:6,5:216,144:-28.2627,-10.6352,-8.82904,-17.9346,0,-16.4294	1/1:3:0,3,0:0:0:3,0:105,0:-9.77482,-0.90309,0,-9.77482,-0.90309,-9.77482	1/1:247:1,244,1:1:33:244,1:8459,36:-756.688,-70.7921,0,-754.052,-70.5079,-756.419	1/1:116:0,116,0:0:0:116,0:4042,0:-362.427,-34.9195,0,-362.427,-34.9195,-362.427	1/2:146:1,53,91:1:33:53,91:1856,2908:-370.161,-220.183,-206.897,-147.599,0,-122.873	1/2:4:0,1,3:0:0:1,3:36,108:-12.1048,-9.17208,-8.87105,-3.29214,0,-2.38905	1/1:111:0,111,0:0:0:111,0:3837,0:-344.328,-33.4143,0,-344.328,-33.4143,-344.328	1/1:52:0,52,0:0:0:52,0:1816,0:-162.397,-15.6536,0,-162.397,-15.6536,-162.397	1/1:81:0,80,0:0:0:80,0:2785,0:-249.867,-24.0824,0,-249.867,-24.0824,-249.867	1/1:104:0,103,0:0:0:103,0:3610,0:-324.19,-31.0061,0,-324.19,-31.0061,-324.19	1/2:104:0,33,70:0:0:33,70:1091,2392:-274.921,-186.848,-176.914,-88.1208,0,-67.0487	1/1:95:0,95,0:0:0:95,0:3298,0:-296.435,-28.5979,0,-296.435,-28.5979,-296.435	1/2:145:0,62,83:0:0:62,83:2124,2618:-370.624,-198.699,-180.035,-172.248,0,-147.263	1/1:145:0,143,1:0:0:143,1:4922,36:-442.006,-43.0473,0,-439.073,-40.0316,-438.772	1/1:78:0,78,0:0:0:78,0:2755,0:-247.879,-23.4803,0,-247.879,-23.4803,-247.879	1/1:106:0,106,0:0:0:106,0:3731,0:-334.773,-31.9092,0,-334.773,-31.9092,-334.773	1/1:102:0,102,0:0:0:102,0:3564,0:-320.66,-30.7051,0,-320.66,-30.7051,-320.66	1/2:12:0,5,7:0:0:5,7:178,237:-33.2393,-18.73,-17.2248,-14.8524,0,-12.7452	1/1:108:0,107,1:0:0:107,1:3746,36:-334.59,-32.2102,0,-331.652,-28.913,-331.351	1/1:31:0,31,0:0:0:31,0:1059,0:-95.392,-9.33193,0,-95.392,-9.33193,-95.392	1/2:30:0,6,24:0:0:6,24:195,743:-71.8411,-56.1341,-54.3279,-16.0248,0,-8.80005	1/2:132:0,46,86:0:0:46,86:1607,2761:-340.459,-210.129,-196.281,-130.663,0,-104.774	1/1:52:0,51,0:0:0:51,0:1753,0:-1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chr02	21132338	.	G	A	143122	PASS	AB=0.347016;ABP=701.296;AC=158;AF=0.840426;AN=188;AO=6908;CIGAR=1X;DP=9164;DPB=9164;DPRA=0;EPP=15003.5;EPPR=4891;GTI=7;LEN=1;MEANALT=1.01064;MQM=53.8082;MQMR=44.7525;NS=94;NUMALT=1;ODDS=3.01494;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241505;QR=80293;RO=2255;RPL=6902;RPP=14951.5;RPPR=12.4483;RPR=6;RUN=1;SAF=6902;SAP=14951.5;SAR=6;SRF=1077;SRP=12.8334;SRR=1178;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1228:-110.201,-10.8371,0	1/1:107:0,107:0:0:107:3773:-336.822,-32.2102,0	1/1:160:0,160:0:0:160:5565:-496.922,-48.1648,0	1/1:164:0,164:0:0:164:5710:-512.66,-49.3689,0	0/1:111:71,40:71:2540:40:1395:-92.1426,0,-156.914	0/1:87:63,24:63:2243:24:816:-47.4015,0,-143.724	1/1:177:0,177:0:0:177:6143:-551.802,-53.2823,0	1/1:117:0,117:0:0:117:4068:-364.974,-35.2205,0	1/1:105:1,104:1:36:104:3610:-319.705,-28.8719,0	1/1:67:0,67:0:0:67:2359:-212.197,-20.169,0	1/1:109:0,109:0:0:109:3858:-347.09,-32.8123,0	1/1:93:0,93:0:0:93:3280:-293.496,-27.9958,0	1/1:104:0,104:0:0:104:3703:-331.33,-31.3071,0	0/1:154:96,58:96:3429:58:2067:-139.171,0,-229.021	0/1:113:61,52:61:2184:52:1844:-132.101,0,-147.441	0/1:103:68,35:68:2440:35:1225:-79.2489,0,-171.969	1/1:124:0,124:0:0:124:4392:-392.871,-37.3277,0	0/1:86:50,36:50:1772:36:1271:-88.1554,0,-116.295	1/1:53:0,53:0:0:53:1863:-166.634,-15.9546,0	0/1:188:137,51:137:4877:51:1766:-102.255,0,-346.677	0/1:206:135,71:135:4808:71:2487:-160.995,0,-323.283	1/1:79:0,79:0:0:79:2769:-249.167,-23.7814,0	1/1:57:1,56:1:36:56:1951:-172.408,-14.0351,0	0/1:104:65,39:65:2332:39:1363:-91.3783,0,-167.175	1/1:61:0,61:0:0:61:2114:-189.635,-18.3628,0	1/1:245:0,245:0:0:245:8519:-766.215,-73.7524,0	1/1:179:0,179:0:0:179:6203:-556.816,-53.8844,0	1/1:57:0,57:0:0:57:1999:-179.806,-17.1587,0	1/1:175:0,175:0:0:175:6087:-546.855,-52.6803,0	1/1:59:0,59:0:0:59:2035:-182.503,-17.7608,0	0/1:178:122,56:122:4333:56:1949:-121.198,0,-303.978	1/1:4:0,4:0:0:4:140:-12.9223,-1.20412,0	1/1:7:0,7:0:0:7:243:-22.1571,-2.10721,0	1/1:3:0,3:0:0:3:108:-9.67347,-0.90309,0	0/1:12:6,6:6:212:6:212:-15.7676,0,-11.6807	1/1:3:0,3:0:0:3:104:-9.68253,-0.90309,0	1/1:237:1,236:1:36:236:8262:-738.172,-67.7458,0	1/1:112:0,112:0:0:112:3861:-345.248,-33.7154,0	0/1:147:94,53:94:3335:53:1841:-121.127,0,-220.844	0/1:4:3,1:3:108:1:36:-2.38905,0,-8.87105	1/1:104:0,104:0:0:104:3581:-320.981,-31.3071,0	1/1:50:0,50:0:0:50:1760:-157.485,-15.0515,0	1/1:79:0,79:0:0:79:2746:-245.848,-23.7814,0	1/1:105:0,105:0:0:105:3672:-329.861,-31.6082,0	0/1:99:66,33:66:2341:33:1167:-75.2896,0,-169.23	1/1:93:0,93:0:0:93:3238:-290.976,-27.9958,0	0/1:149:90,59:90:3212:59:2061:-140.373,0,-206.385	1/1:142:0,142:0:0:142:4991:-447.094,-42.7463,0	1/1:77:0,77:0:0:77:2683:-241.53,-23.1793,0	1/1:100:0,100:0:0:100:3505:-314.39,-30.103,0	1/1:98:0,98:0:0:98:3424:-308.054,-29.5009,0	0/1:12:7,5:7:252:5:172:-12.1965,0,-17.6804	1/1:104:0,103:0:0:103:3599:-321.998,-31.0061,0	1/1:31:0,31:0:0:31:1087:-97.445,-9.33193,0	0/1:30:24,6:24:852:6:212:-10.3409,0,-56.6096	0/1:129:88,41:88:3124:41:1405:-87.5285,0,-210.312	1/1:47:0,47:0:0:47:1628:-145.662,-14.1484,0	0/1:7:6,1:6:216:1:36:-1.48847,0,-16.3922	0/1:23:17,6:17:608:6:216:-12.8598,0,-45.7443	1/1:59:0,59:0:0:59:2068:-185.692,-17.7608,0	0/1:196:129,67:129:4565:67:2351:-152.46,0,-330.843	1/1:4:0,4:0:0:4:140:-12.9364,-1.20412,0	1/1:87:0,87:0:0:87:3080:-276.964,-26.1896,0	0/1:221:132,89:132:4683:89:3094:-211.07,0,-318.095	1/1:45:4,41:4:140:41:1447:-119.182,-2.37883,0	1/1:44:0,44:0:0:44:1543:-138.841,-13.2453,0	0/1:178:122,56:122:4354:56:1938:-120.547,0,-301.651	1/1:59:1,58:1:36:58:2005:-176.915,-14.1625,0	1/1:79:0,79:0:0:79:2795:-250.922,-23.7814,0	1/1:74:1,73:1:32:73:2558:-226.406,-19.0769,0	0/1:153:95,58:95:3384:58:2064:-139.776,0,-242.823	1/1:19:0,19:0:0:19:634:-57.3336,-5.71957,0	1/1:39:0,39:0:0:39:1367:-122.877,-11.7402,0	0/1:109:71,38:71:2505:38:1356:-88.8151,0,-171.719	1/1:182:1,181:1:36:181:6265:-558.574,-51.1892,0	1/1:83:0,83:0:0:83:2874:-258.541,-24.9855,0	1/1:78:0,78:0:0:78:2741:-244.535,-23.4803,0	1/1:56:0,56:0:0:56:1979:-177.121,-16.8577,0	1/1:5:0,5:0:0:5:180:-16.4823,-1.50515,0	1/1:36:0,36:0:0:36:1264:-113.153,-10.8371,0	0/1:151:107,44:107:3823:44:1563:-94.207,0,-250.108	1/1:139:1,138:1:36:138:4822:-429.475,-38.2449,0	1/1:119:0,119:0:0:119:4157:-373.868,-35.8226,0	1/1:109:0,109:0:0:109:3830:-343.989,-32.8123,0	0/1:125:79,46:79:2832:46:1585:-105.186,0,-199.773	1/1:152:1,151:1:36:151:5299:-472.262,-42.1583,0	0/1:64:38,26:38:1323:26:924:-63.6066,0,-86.0237	1/1:105:0,105:0:0:105:3690:-330.616,-31.6082,0	1/1:98:0,98:0:0:98:3470:-310.649,-29.5009,0	1/1:101:0,101:0:0:101:3554:-318.261,-30.404,0	0/1:170:101,69:101:3599:69:2441:-167.963,0,-249.334	0/1:126:100,26:100:3583:26:919:-44.9572,0,-257.034	1/1:99:0,99:0:0:99:3430:-308.151,-29.802,0	1/1:134:0,134:0:0:134:4676:-420.231,-40.338,0
chr02	21278863	.	TG	CG,CC	206128	PASS	AB=0.479576,0.518853;ABP=12.2352,10.8706;AC=159,29;AF=0.845745,0.154255;AN=188;AO=7962,1330;CIGAR=1X1M,2X;DP=9308;DPB=9308;DPRA=0,1.03279;EPP=17292.3,2891.07;EPPR=9.52472;GTI=1;LEN=1,2;MEANALT=1.5,2.11111;MQM=59.9161,58.9353;MQMR=60;NS=94;NUMALT=2;ODDS=0.387478;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=284531,47021;QR=106;RO=3;RPL=7962,1330;RPP=17292.3,2891.07;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=17292.3,2891.07;SAR=7962,1330;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33,0:0:0:33,0:1166,0:-105.247,-9.93399,0,-105.247,-9.93399,-105.247	1/1:98:0,97,0:0:0:97,0:3472,0:-312.393,-29.1999,0,-312.393,-29.1999,-312.393	1/1:115:0,115,0:0:0:115,0:4105,0:-369.63,-34.6185,0,-369.63,-34.6185,-369.63	1/1:308:0,307,0:0:0:307,0:11002,0:-989.44,-92.4162,0,-989.44,-92.4162,-989.44	1/2:54:0,31,23:0:0:31,23:1104,826:-157.721,-67.7401,-58.4082,-90.3387,0,-83.415	1/2:38:0,14,24:0:0:14,24:496,862:-110.988,-70.5871,-66.3727,-40.7571,0,-33.5324	1/1:138:0,138,0:0:0:138,0:4948,0:-445.451,-41.5421,0,-445.451,-41.5421,-445.451	1/1:154:0,152,2:0:0:152,2:5444,72:-489.694,-45.7566,0,-483.821,-39.5238,-483.219	1/1:85:0,85,0:0:0:85,0:3020,0:-272.03,-25.5876,0,-272.03,-25.5876,-272.03	1/1:95:0,95,0:0:0:95,0:3404,0:-306.574,-28.5979,0,-306.574,-28.5979,-306.574	1/1:111:0,111,0:0:0:111,0:3934,0:-354.255,-33.4143,0,-354.255,-33.4143,-354.255	1/1:68:0,68,0:0:0:68,0:2436,0:-219.493,-20.47,0,-219.493,-20.47,-219.493	1/1:95:1,94,0:1:34:94,0:3352,0:-298.483,-25.1989,0,-298.784,-28.2968,-301.542	1/2:127:0,59,68:0:0:59,68:2120,2390:-367.697,-194.745,-176.984,-173.308,0,-152.838	1/2:86:0,38,48:0:0:38,48:1356,1713:-250.221,-139.676,-128.237,-110.901,0,-96.4519	1/2:76:0,36,40:0:0:36,40:1292,1425:-221.848,-116.459,-105.621,-105.747,0,-93.7055	1/1:134:0,134,0:0:0:134,0:4794,0:-431.601,-40.338,0,-431.601,-40.338,-431.601	1/2:71:0,34,37:0:0:34,37:1224,1315:-207.119,-107.246,-97.011,-100.23,0,-89.0921	1/1:50:0,50,0:0:0:50,0:1800,0:-162.282,-15.0515,0,-162.282,-15.0515,-162.282	1/2:124:0,44,80:0:0:44,80:1549,2827:-356.675,-230.573,-217.328,-126.454,0,-102.372	1/2:136:0,61,74:0:0:61,74:2188,2600:-390.091,-211.624,-193.261,-178.57,0,-156.294	1/1:67:0,67,0:0:0:67,0:2396,0:-215.896,-20.169,0,-215.896,-20.169,-215.896	1/1:72:0,72,0:0:0:72,0:2564,0:-231.011,-21.6742,0,-231.011,-21.6742,-231.011	1/2:133:0,68,65:0:0:68,65:2405,2323:-385.547,-189.666,-169.196,-196.236,0,-176.669	1/1:22:0,22,0:0:0:22,0:769,0:-69.2579,-6.62266,0,-69.2579,-6.62266,-69.2579	1/1:320:0,320,0:0:0:320,0:11409,0:-1026.36,-96.3296,0,-1026.36,-96.3296,-1026.36	1/1:243:0,242,1:0:0:242,1:8688,36:-781.547,-72.8493,0,-778.609,-69.552,-778.308	1/1:38:0,38,0:0:0:38,0:1359,0:-122.61,-11.4391,0,-122.61,-11.4391,-122.61	1/1:360:0,359,1:0:0:359,1:12852,36:-1156.14,-108.07,0,-1153.2,-104.773,-1152.9	1/1:138:0,138,0:0:0:138,0:4937,0:-444.473,-41.5421,0,-444.473,-41.5421,-444.473	1/2:147:0,73,74:0:0:73,74:2603,2580:-421.88,-209.689,-187.714,-212.543,0,-190.267	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:8:0,6,2:0:0:6,2:216,70:-23.6757,-6.04371,-4.23753,-17.9843,0,-17.3823	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:241:0,240,0:0:0:240,0:8604,0:-774.088,-72.2472,0,-774.088,-72.2472,-774.088	1/1:106:0,106,0:0:0:106,0:3779,0:-340.31,-31.9092,0,-340.31,-31.9092,-340.31	1/2:89:0,44,45:0:0:44,45:1576,1585:-257.809,-129.279,-116.034,-128.885,0,-115.339	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:145:0,145,0:0:0:145,0:5204,0:-468.491,-43.6494,0,-468.491,-43.6494,-468.491	1/1:39:0,39,0:0:0:39,0:1404,0:-126.659,-11.7402,0,-126.659,-11.7402,-126.659	1/1:53:0,53,0:0:0:53,0:1889,0:-170.286,-15.9546,0,-170.286,-15.9546,-170.286	1/1:102:0,102,0:0:0:102,0:3651,0:-328.678,-30.7051,0,-328.678,-30.7051,-328.678	1/2:69:0,30,38:0:0:30,38:1080,1347:-197.752,-109.627,-100.596,-88.1225,0,-76.6834	1/1:97:0,97,0:0:0:97,0:3448,0:-310.535,-29.1999,0,-310.535,-29.1999,-310.535	1/2:129:0,75,54:0:0:75,54:2673,1873:-370.289,-152.405,-129.828,-218.234,0,-201.979	1/1:144:0,143,0:0:0:143,0:5073,0:-456.456,-43.0473,0,-456.456,-43.0473,-456.456	1/1:81:0,81,0:0:0:81,0:2896,0:-260.876,-24.3834,0,-260.876,-24.3834,-260.876	1/1:210:0,210,0:0:0:210,0:7517,0:-676.57,-63.2163,0,-676.57,-63.2163,-676.57	1/1:89:2,84,0:2:72:84,0:2996,0:-263.018,-19.4117,0,-263.62,-25.2865,-269.495	1/2:15:0,11,4:0:0:11,4:392,144:-44.0594,-12.1095,-8.79817,-32.3087,0,-31.1046	1/1:114:0,114,0:0:0:114,0:4088,0:-368.102,-34.3174,0,-368.102,-34.3174,-368.102	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/2:18:0,9,9:0:0:9,9:324,324:-53.2251,-26.7883,-24.0791,-26.7966,0,-24.0873	1/2:133:0,73,60:0:0:73,60:2592,2113:-383.469,-172.322,-150.347,-211.501,0,-193.439	1/1:70:0,70,0:0:0:70,0:2488,0:-224.174,-21.0721,0,-224.174,-21.0721,-224.174	1/2:2:0,1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chr02	21285897	.	G	C	143665	PASS	AB=0.522752;ABP=11.113;AC=157;AF=0.835106;AN=188;AO=6470;CIGAR=1X;DP=7353;DPB=7353;DPRA=79.0538;EPP=14052.4;EPPR=1883.51;GTI=3;LEN=1;MEANALT=1.11828;MQM=45.579;MQMR=59.8256;NS=94;NUMALT=1;ODDS=4.27806;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223689;QR=29987;RO=866;RPL=277;RPP=11749.5;RPPR=1747.1;RPR=6193;RUN=1;SAF=277;SAP=11749.5;SAR=6193;SRF=16;SRP=1747.1;SRR=850;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:68:0,68:0:0:68:2380:-209.659,-20.47,0	1/1:73:0,73:0:0:73:2532:-223.773,-21.9752,0	1/1:150:0,150:0:0:150:5199:-456.872,-45.1545,0	1/1:151:0,151:0:0:151:5227:-466.636,-45.4555,0	0/1:70:30,40:30:1057:40:1415:-105.379,0,-74.3645	0/1:58:20,36:20:712:36:1266:-94.9204,0,-47.2334	1/1:81:1,80:1:36:80:2733:-239.11,-20.7852,0	1/1:135:1,134:1:36:134:4664:-406.804,-37.0408,0	1/1:78:0,78:0:0:78:2682:-233.369,-23.4803,0	1/1:60:0,60:0:0:60:2102:-186.193,-18.0618,0	1/1:32:0,32:0:0:32:1105:-98.1323,-9.63296,0	1/1:92:0,92:0:0:92:3169:-278.666,-27.6948,0	1/1:57:0,57:0:0:57:1954:-172.28,-17.1587,0	0/1:35:15,20:15:528:20:676:-49.7151,0,-37.3153	0/1:69:44,25:44:1505:25:862:-55.8985,0,-114.962	0/1:51:23,28:23:777:28:942:-68.3637,0,-54.8894	1/1:18:0,18:0:0:18:582:-51.911,-5.41854,0	0/1:20:6,14:6:212:14:487:-37.0472,0,-13.4042	1/1:16:0,16:0:0:16:547:-47.7407,-4.81648,0	0/1:152:70,82:70:2444:82:2821:-205.549,0,-174.424	0/1:127:66,61:66:2334:61:2089:-145.511,0,-172.089	1/1:113:0,113:0:0:113:3902:-348.828,-34.0164,0	1/1:94:0,94:0:0:94:3266:-288.991,-28.2968,0	0/1:54:16,38:16:568:38:1321:-101.439,0,-35.1962	1/1:119:0,119:0:0:119:4129:-366.732,-35.8226,0	1/1:239:0,239:0:0:239:8290:-741.536,-71.9462,0	1/1:239:0,239:0:0:239:8299:-733.745,-71.9462,0	1/1:40:0,40:0:0:40:1345:-118.393,-12.0412,0	1/1:200:0,199:0:0:199:6912:-616.749,-59.905,0	1/1:112:0,112:0:0:112:3912:-347.394,-33.7154,0	0/1:76:38,38:38:1314:38:1327:-95.2422,0,-95.6767	1/1:5:0,5:0:0:5:180:-16.2979,-1.50515,0	1/1:7:0,7:0:0:7:220:-19.9265,-2.10721,0	1/1:2:0,2:0:0:2:68:-6.35344,-0.60206,0	0/1:6:2,4:2:72:4:131:-9.97156,0,-5.03054	1/1:3:0,3:0:0:3:104:-9.52825,-0.90309,0	1/1:147:0,147:0:0:147:5038:-449.755,-44.2514,0	1/1:123:0,123:0:0:123:4278:-377.548,-37.0267,0	0/1:45:21,24:21:722:24:775:-54.87,0,-51.7508	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:108:0,108:0:0:108:3716:-328.699,-32.5112,0	1/1:28:0,28:0:0:28:940:-83.6443,-8.42884,0	1/1:176:0,176:0:0:176:6099:-540.414,-52.9813,0	1/1:55:0,55:0:0:55:1869:-165.972,-16.5567,0	0/1:31:17,14:17:579:14:472:-33.1608,0,-43.0963	1/1:126:0,126:0:0:126:4432:-393.719,-37.9298,0	0/1:93:41,52:41:1394:52:1813:-131.216,0,-97.7526	1/1:186:1,185:1:32:185:6376:-564.836,-52.7923,0	1/1:81:0,81:0:0:81:2836:-251.676,-24.3834,0	1/1:84:0,82:0:0:82:2860:-253.689,-24.6845,0	1/1:85:0,85:0:0:85:2933:-262.372,-25.5876,0	0/1:8:7,1:7:235:1:36:-1.15857,0,-19.0697	1/1:135:0,135:0:0:135:4692:-411.75,-40.6391,0	1/1:49:0,49:0:0:49:1720:-154.139,-14.7505,0	0/1:9:5,4:5:176:4:140:-9.90074,0,-13.4757	0/1:64:32,32:32:1097:32:1075:-75.9076,0,-79.7526	1/1:53:0,52:0:0:52:1797:-159.707,-15.6536,0	1/1:4:0,4:0:0:4:140:-12.8831,-1.20412,0	0/1:12:8,4:8:275:4:140:-9.27079,0,-21.4711	1/1:55:0,55:0:0:55:1924:-171.464,-16.5567,0	0/1:63:37,26:37:1294:26:879:-59.7408,0,-97.7946	1/1:10:0,10:0:0:10:341:-30.7761,-3.0103,0	1/1:127:0,126:0:0:126:4400:-391.015,-37.9298,0	0/1:180:84,96:84:2908:96:3355:-244.212,0,-207.769	0/1:50:5,45:5:176:45:1559:-122.968,0,-1.13352	1/1:86:0,82:0:0:82:2853:-253.903,-24.6845,0	0/1:172:71,101:71:2481:101:3488:-258.083,0,-171.764	1/1:182:2,178:2:72:178:6183:-542.006,-47.6974,0	1/1:27:0,27:0:0:27:897:-80.1908,-8.12781,0	1/1:56:0,56:0:0:56:1908:-167.919,-16.8577,0	0/1:49:26,23:26:853:23:777:-55.0468,0,-62.319	1/1:22:0,22:0:0:22:776:-68.9124,-6.62266,0	1/1:126:0,126:0:0:126:4306:-379.758,-37.9298,0	0/1:60:23,37:23:812:37:1298:-96.169,0,-55.3391	1/1:142:0,142:0:0:142:4955:-439.705,-42.7463,0	1/1:131:0,130:0:0:130:4455:-395.575,-39.1339,0	1/1:123:0,123:0:0:123:4272:-377.501,-37.0267,0	1/1:76:0,76:0:0:76:2599:-228.757,-22.8783,0	1/1:13:1,12:1:36:12:415:-33.2933,-0.315115,0	1/1:94:0,94:0:0:94:3254:-287.648,-28.2968,0	0/1:51:26,25:26:924:25:868:-61.799,0,-68.1233	1/1:160:0,160:0:0:160:5564:-494.622,-48.1648,0	1/1:46:0,45:0:0:45:1579:-139.363,-13.5464,0	1/1:50:0,50:0:0:50:1705:-152.001,-15.0515,0	0/1:40:22,17:22:757:17:592:-40.0914,0,-56.3497	1/1:103:2,101:2:42:101:3463:-304.589,-27.2559,0	0/1:18:10,8:10:328:8:280:-19.6496,0,-24.4185	1/1:63:0,63:0:0:63:2170:-191.812,-18.9649,0	1/1:58:0,58:0:0:58:1983:-173.617,-17.4597,0	1/1:24:1,23:1:36:23:780:-65.8791,-3.62645,0	0/1:71:40,30:40:1379:30:991:-65.475,0,-102.954	0/1:68:51,17:51:1748:17:583:-31.7619,0,-137.1	1/1:80:0,80:0:0:80:2796:-249.26,-24.0824,0	1/1:72:0,72:0:0:72:2424:-216.286,-21.6742,0
chr02	21285902	.	GA	AA	151620	PASS	AB=0.518822;ABP=8.65044;AC=157;AF=0.835106;AN=188;AO=6566;CIGAR=1X1M;DP=7470;DPB=7470;DPRA=40.1505;EPP=14260.9;EPPR=1935.62;GTI=3;LEN=1;MEANALT=1.04301;MQM=45.571;MQMR=59.8213;NS=94;NUMALT=1;ODDS=1.3588;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233581;QR=31111;RO=890;RPL=282;RPP=11916.7;RPPR=1799.14;RPR=6284;RUN=1;SAF=282;SAP=11916.7;SAR=6284;SRF=16;SRP=1799.14;SRR=874;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:69:0,69:0:0:69:2446:-216.215,-20.7711,0	1/1:73:0,73:0:0:73:2610:-229.994,-21.9752,0	1/1:152:0,152:0:0:152:5396:-474.213,-45.7566,0	1/1:149:0,149:0:0:149:5338:-475.691,-44.8535,0	0/1:72:30,42:30:1058:42:1501:-111.964,0,-73.8101	0/1:60:22,38:22:779:38:1353:-101.879,0,-52.3695	1/1:83:1,82:1:36:82:2932:-256.706,-21.3872,0	1/1:135:1,134:1:36:134:4748:-414.549,-37.0408,0	1/1:85:0,79:0:0:79:2790:-244.931,-23.7814,0	1/1:64:0,64:0:0:64:2282:-202.658,-19.2659,0	1/1:32:0,29:0:0:29:1040:-92.7821,-8.72987,0	1/1:92:0,92:0:0:92:3263:-286.963,-27.6948,0	1/1:56:0,56:0:0:56:1966:-173.07,-16.8577,0	0/1:34:15,19:15:507:19:671:-49.6389,0,-35.715	0/1:68:44,24:44:1533:24:843:-54.807,0,-117.789	0/1:50:23,27:23:809:27:959:-70.2174,0,-58.0779	1/1:19:0,19:0:0:19:676:-59.8836,-5.71957,0	0/1:22:7,15:7:239:15:539:-40.9711,0,-15.2174	1/1:16:0,16:0:0:16:561:-49.5362,-4.81648,0	0/1:161:73,88:73:2508:88:3102:-227.167,0,-177.496	0/1:132:69,63:69:2424:63:2206:-155.074,0,-178.678	1/1:115:0,115:0:0:115:4084:-364.821,-34.6185,0	1/1:97:0,97:0:0:97:3442:-304.957,-29.1999,0	0/1:56:18,38:18:642:38:1354:-103.604,0,-41.2524	1/1:118:0,118:0:0:118:4197:-372.773,-35.5215,0	1/1:242:0,242:0:0:242:8665:-773.602,-72.8493,0	1/1:244:0,244:0:0:244:8718:-771.47,-73.4513,0	1/1:40:0,40:0:0:40:1400:-123.749,-12.0412,0	1/1:204:0,204:0:0:204:7241:-645.961,-61.4101,0	1/1:115:0,115:0:0:115:4112:-364.749,-34.6185,0	0/1:77:39,38:39:1370:38:1349:-96.921,0,-100.417	1/1:5:0,5:0:0:5:180:-16.2979,-1.50515,0	1/1:7:0,7:0:0:7:252:-22.7105,-2.10721,0	1/1:2:0,2:0:0:2:72:-6.68992,-0.60206,0	0/1:6:2,4:2:72:4:125:-9.36437,0,-5.03054	1/1:4:0,4:0:0:4:144:-12.9904,-1.20412,0	1/1:150:0,150:0:0:150:5300:-472.437,-45.1545,0	1/1:127:0,127:0:0:127:4522:-399.184,-38.2308,0	0/1:44:21,23:21:749:23:814:-58.5349,0,-54.4889	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:111:0,111:0:0:111:3951:-349.122,-33.4143,0	1/1:30:0,30:0:0:30:1068:-94.5806,-9.0309,0	1/1:178:0,178:0:0:178:6362:-563.74,-53.5833,0	1/1:55:0,55:0:0:55:1944:-172.748,-16.5567,0	0/1:31:17,14:17:577:14:504:-35.9813,0,-42.9165	1/1:131:0,131:0:0:131:4629:-412.445,-39.4349,0	0/1:97:41,52:41:1428:52:1857:-135.017,0,-100.471	1/1:185:1,184:1:34:184:6556:-580.28,-52.2916,0	1/1:81:0,81:0:0:81:2871:-255.784,-24.3834,0	1/1:83:0,83:0:0:83:2952:-262.674,-24.9855,0	1/1:86:0,86:0:0:86:3080:-275.051,-25.8886,0	0/1:8:7,1:7:250:1:36:-1.15857,0,-20.4384	1/1:137:0,137:0:0:137:4881:-427.625,-41.2411,0	1/1:51:0,51:0:0:51:1818:-162.865,-15.3525,0	0/1:9:5,4:5:163:4:144:-10.2284,0,-12.2815	0/1:63:31,32:31:1055:32:1136:-81.7538,0,-76.2681	1/1:55:0,55:0:0:55:1963:-174.548,-16.5567,0	1/1:4:0,4:0:0:4:144:-13.2414,-1.20412,0	0/1:12:8,4:8:281:4:144:-9.62908,0,-22.018	1/1:54:0,54:0:0:54:1925:-171.348,-16.2556,0	0/1:63:37,26:37:1298:26:926:-63.7577,0,-98.1541	1/1:10:0,10:0:0:10:360:-32.458,-3.0103,0	1/1:128:0,128:0:0:128:4561:-405.328,-38.5318,0	0/1:181:86,95:86:3023:95:3382:-246.846,0,-217.814	0/1:51:6,45:6:205:45:1611:-127.337,0,-3.4311	1/1:86:0,86:0:0:86:3080:-274.635,-25.8886,0	0/1:174:73,101:73:2559:101:3594:-267.329,0,-178.18	1/1:185:3,181:3:106:181:6453:-563.113,-45.7375,0	1/1:28:0,28:0:0:28:990:-87.8101,-8.42884,0	1/1:54:0,54:0:0:54:1923:-169.132,-16.2556,0	0/1:48:27,21:27:950:21:756:-53.2832,0,-71.3642	1/1:22:0,22:0:0:22:781:-69.7438,-6.62266,0	1/1:127:0,127:0:0:127:4532:-398.664,-38.2308,0	0/1:62:23,39:23:813:39:1393:-103.887,0,-54.8261	1/1:147:0,147:0:0:147:5229:-463.342,-44.2514,0	1/1:130:0,130:0:0:130:4644:-413.427,-39.1339,0	1/1:126:0,126:0:0:126:4460:-394.369,-37.9298,0	1/1:78:0,78:0:0:78:2774:-244.196,-23.4803,0	1/1:12:1,11:1:36:11:396:-31.5233,-0.0140851,0	1/1:101:0,101:0:0:101:3589:-317.616,-30.404,0	0/1:52:26,26:26:927:26:917:-65.6555,0,-68.0928	1/1:165:0,165:0:0:165:5891:-523.603,-49.67,0	1/1:46:0,46:0:0:46:1634:-144.85,-13.8474,0	1/1:50:0,50:0:0:50:1754:-156.396,-15.0515,0	0/1:42:24,18:24:837:18:625:-43.062,0,-63.003	1/1:107:2,105:2:55:105:3729:-327.633,-27.9744,0	0/1:19:12,7:12:414:7:248:-16.3853,0,-31.8693	1/1:63:0,63:0:0:63:2260:-199.343,-18.9649,0	1/1:58:0,58:0:0:58:2064:-180.543,-17.4597,0	1/1:25:1,24:1:36:24:840:-71.0854,-3.92748,0	0/1:72:41,31:41:1438:31:1082:-73.0564,0,-108.016	0/1:67:51,16:51:1792:16:572:-31.0112,0,-141.389	1/1:81:0,81:0:0:81:2895:-257.95,-24.3834,0	1/1:70:0,70:0:0:70:2478:-221.141,-21.0721,0
chr02	21667608	.	TTTT	TTTC	239544	PASS	AB=0.507323;ABP=4.60042;AC=157;AF=0.844086;AN=186;AO=10868;CIGAR=3M1X;DP=12588;DPB=12589.8;DPRA=0;EPP=23602.6;EPPR=3674.97;GTI=1;LEN=1;MEANALT=1.30108;MQM=59.9913;MQMR=60;NS=93;NUMALT=1;ODDS=2.94803;PAIRED=0;PAIREDR=0;PAO=1.5;PQA=51.5;PQR=51.5;PRO=1.5;QA=387604;QR=60090;RO=1691;RPL=10868;RPP=23602.6;RPPR=3674.97;RPR=0;RUN=1;SAF=0;SAP=23602.6;SAR=10868;SRF=0;SRP=3674.97;SRR=1691;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:65:0,65:0:0:65:2308:-207.98,-19.567,0	1/1:237:0,237:0:0:237:8455:-760.95,-71.3441,0	1/1:183:1,181:1:36:181:6405:-572.973,-51.5191,0	1/1:320:1,319:1:36:319:11290:-1012.39,-92.7313,0	0/1:134:59,75:59:2097:75:2682:-201.285,0,-148.663	0/1:95:41,54:41:1450:54:1936:-145.919,0,-102.198	1/1:201:0,199:0:0:199:7110:-639.599,-59.905,0	1/1:209:0,209:0:0:209:7463:-671.715,-62.9153,0	1/1:182:0,181:0:0:181:6438:-579.149,-54.4864,0	1/1:105:0,104:0:0:104:3702:-333.02,-31.3071,0	1/1:71:1,70:1:36:70:2502:-221.835,-17.7749,0	1/1:78:0,77:0:0:77:2752:-247.563,-23.1793,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:67:33,34:33:1182:34:1212:-89.2173,0,-86.5197	0/1:74:22,52:22:778:52:1872:-146.483,0,-48.0662	0/1:56:27,28:27:970:28:1008:-74.1199,0,-70.7014	1/1:65:0,65:0:0:65:2325:-209.508,-19.567,0	0/1:58:32,26:32:1146:26:924:-66.0179,0,-85.9905	1/1:36:0,36:0:0:36:1277:-115.231,-10.8371,0	0/1:301:157,144:157:5571:144:5164:-374.29,0,-410.91	0/1:291:134,156:134:4768:156:5551:-412.054,0,-341.622	1/1:136:0,136:0:0:136:4834:-435.215,-40.9401,0	1/1:111:0,111:0:0:111:3972:-357.671,-33.4143,0	0/1:201:80,121:80:2844:121:4317:-328.199,0,-195.692	1/1:144:0,144:0:0:144:5152:-463.799,-43.3483,0	1/1:412:0,411:0:0:411:14650:-1317.88,-123.723,0	1/1:314:0,314:0:0:314:11217:-1009.42,-94.5234,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:456:0,456:0:0:456:16284:-1465.17,-137.27,0	1/1:141:0,141:0:0:141:5036:-453.319,-42.4452,0	0/1:140:72,67:72:2559:67:2385:-172.703,0,-188.359	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:4:3,1:3:105:1:36:-2.39415,0,-8.59185	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:190:0,190:0:0:190:6797:-611.801,-57.1957,0	1/1:153:0,150:0:0:150:5323:-478.715,-45.1545,0	0/1:73:36,37:36:1292:37:1332:-98.2072,0,-94.6089	0/1:6:4,2:4:139:2:72:-5.03054,0,-11.0462	1/1:212:0,212:0:0:212:7487:-673.875,-63.8184,0	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	1/1:275:0,274:0:0:274:9805:-882.034,-82.4822,0	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	0/1:94:55,39:55:1957:39:1395:-97.5515,0,-148.109	1/1:181:0,181:0:0:181:6450:-580.587,-54.4864,0	0/1:196:94,102:94:3357:102:3636:-268.442,0,-243.347	1/1:246:1,243:1:30:243:8666:-776.895,-70.7717,0	1/1:170:0,169:0:0:169:6011:-540.734,-50.8741,0	1/1:229:0,229:0:0:229:8170:-735.314,-68.9359,0	1/1:181:0,181:0:0:181:6451:-580.675,-54.4864,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:181:0,181:0:0:181:6461:-581.577,-54.4864,0	1/1:50:1,49:1:36:49:1752:-154.366,-11.4532,0	0/1:7:4,3:4:144:3:93:-6.56952,0,-11.2064	0/1:237:134,103:134:4749:103:3692:-261.138,0,-356.229	1/1:69:0,69:0:0:69:2452:-220.936,-20.7711,0	.:.:.:.:.:.:.:.	0/1:13:9,4:9:317:4:144:-9.40023,0,-24.9566	1/1:125:0,124:0:0:124:4419:-397.523,-37.3277,0	0/1:88:40,48:40:1415:48:1724:-128.955,0,-101.155	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:257:1,256:1:30:256:9096:-815.618,-74.3651,0	0/1:303:143,160:143:5086:160:5696:-421.548,0,-366.675	1/1:95:5,90:5:179:90:3216:-273.202,-12.1375,0	1/1:138:0,138:0:0:138:4924:-443.312,-41.5421,0	0/1:322:160,161:160:5669:161:5681:-414.479,0,-413.405	1/1:159:0,159:0:0:159:5651:-508.711,-47.8638,0	1/1:19:0,18:0:0:18:644:-57.9309,-5.41854,0	1/1:125:0,125:0:0:125:4465:-402.017,-37.6288,0	0/1:89:36,52:36:1280:52:1868:-141.549,0,-88.6531	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	1/1:101:0,101:0:0:101:3597:-323.937,-30.404,0	0/1:107:48,59:48:1675:59:2112:-158.139,0,-118.824	1/1:225:1,224:1:36:224:7986:-715.165,-64.1335,0	1/1:300:0,299:0:0:299:10710:-963.443,-90.008,0	1/1:196:1,194:1:36:194:6945:-621.555,-55.4225,0	1/1:180:1,179:1:35:179:6412:-573.669,-50.6868,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:140:0,139:0:0:139:4957:-445.92,-41.8432,0	0/1:169:85,84:85:3044:84:2980:-217.556,0,-223.316	1/1:389:0,389:0:0:389:13851:-1246.31,-117.101,0	1/1:101:0,100:0:0:100:3565:-320.697,-30.103,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	0/1:121:64,56:64:2296:56:2016:-145.168,0,-170.359	1/1:138:2,135:2:72:135:4841:-429.005,-34.7642,0	0/1:37:17,20:17:604:20:720:-53.9907,0,-43.5524	1/1:66:0,66:0:0:66:2351:-211.849,-19.868,0	1/1:68:0,67:0:0:67:2387:-214.747,-20.169,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:68:43,24:43:1537:24:864:-57.6592,0,-118.202	0/1:60:41,19:41:1429:19:680:-43.4674,0,-110.843	1/1:208:0,208:0:0:208:7413:-667.219,-62.6142,0	1/1:111:0,111:0:0:111:3953:-355.959,-33.4143,0
chr02	21886600	.	AGAGA	AGAGC,GGAGC	204824	PASS	AB=0.627798,0.364518;ABP=1479.91,1662.86;AC=95,91;AF=0.510753,0.489247;AN=186;AO=6551,3796;CIGAR=4M1X,1X3M1X;DP=10427;DPB=10427;DPRA=0,113.326;EPP=14202.3,8228.56;EPPR=20.3821;GTI=10;LEN=1,5;MEANALT=2.66667,2.68478;MQM=59.9957,59.9452;MQMR=60;NS=93;NUMALT=2;ODDS=12272.7;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=234132,133526;QR=252;RO=8;RPL=3,2;RPP=14202.3,8228.56;RPPR=20.3821;RPR=6548,3794;RUN=1,1;SAF=6551,3796;SAP=14228.3,8245.92;SAR=0,0;SRF=8;SRP=20.3821;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:0,35,19:0:0:35,19:1251,678:-157.631,-55.6293,-45.0932,-102.358,0,-96.6387	1/2:99:0,54,43:0:0:54,43:1928,1499:-279.086,-121.897,-105.641,-157.181,0,-144.237	1/2:140:0,58,82:0:0:58,82:2066,2904:-405.308,-236.913,-219.453,-168.75,0,-144.065	1/2:112:0,89,23:0:0:89,23:3196,802:-326.295,-65.5745,-38.7828,-261.071,0,-254.147	1/2:93:0,81,10:0:0:81,10:2900,355:-265.496,-28.9876,-4.60419,-236.571,0,-233.56	1/2:11:0,10,1:0:0:10,1:356,36:-32.3087,-3.29724,-0.286945,-29.3709,0,-29.0699	1/2:83:0,67,16:0:0:67,16:2395,542:-239.579,-44.2833,-24.1143,-195.637,0,-190.821	1/2:187:0,103,78:0:0:103,78:3687,2753:-524.798,-224.128,-193.122,-300.666,0,-277.186	1/2:83:0,51,31:0:0:51,31:1832,1078:-237.092,-87.6357,-72.2832,-149.448,0,-140.117	1/2:82:0,56,25:0:0:56,25:1996,864:-232.895,-70.1878,-53.3302,-162.697,0,-155.171	1/2:81:0,39,42:0:0:39,42:1404,1452:-232.89,-118.324,-106.584,-114.919,0,-102.276	1/2:92:0,61,31:0:0:61,31:2188,1086:-267.186,-88.7156,-70.3528,-178.823,0,-169.491	1/2:87:0,33,54:0:0:33,54:1180,1895:-250.782,-154.563,-144.629,-96.5741,0,-80.3184	1/2:82:0,44,38:0:0:44,38:1572,1318:-235.651,-107.476,-94.2306,-128.526,0,-117.087	1/2:88:0,34,52:0:0:34,52:1208,1844:-248.765,-150.328,-140.093,-98.5305,0,-82.877	1/2:56:0,41,15:0:0:41,15:1454,527:-161.707,-43.2454,-30.9032,-118.813,0,-114.298	1/2:51:0,34,17:0:0:34,17:1220,608:-149.449,-49.9348,-39.6998,-99.8718,0,-94.7543	1/2:36:0,20,16:0:0:20,16:720,566:-105.206,-46.4539,-40.4333,-59.1082,0,-54.2917	1/2:33:0,26,7:0:0:26,7:932,251:-96.8443,-20.8306,-13.0039,-76.3721,0,-74.2649	1/2:401:0,316,84:0:0:316,84:11291,2971:-1162.57,-241.978,-146.852,-920.59,0,-895.304	1/2:101:1,68,32:1:35:68,32:2414,1123:-284.939,-88.5462,-70.9239,-193.848,0,-187.063	1/2:155:0,67,86:0:0:67,86:2395,3017:-440.848,-245.564,-225.395,-195.326,0,-169.438	1/2:77:0,35,41:0:0:35,41:1248,1433:-218.388,-116.651,-106.115,-101.818,0,-89.4755	1/2:136:0,89,46:0:0:89,46:3192,1614:-391.708,-131.35,-104.558,-260.361,0,-246.514	1/2:80:0,50,29:0:0:50,29:1796,1015:-229.089,-82.5714,-67.5199,-146.511,0,-137.781	1/2:366:0,189,176:0:0:189,176:6736,6152:-1049.49,-500.421,-443.526,-549.06,0,-496.078	1/2:249:0,192,55:0:0:192,55:6854,1956:-718.207,-159.429,-101.631,-558.803,0,-542.246	1/2:59:0,48,11:0:0:48,11:1717,387:-171.868,-31.8551,-17.4056,-140.366,0,-137.054	1/2:273:0,153,116:0:0:153,116:5487,4109:-782.298,-334.756,-288.698,-447.574,0,-412.655	1/2:143:0,110,33:0:0:110,33:3944,1170:-417.356,-95.6728,-62.5595,-322.038,0,-312.104	1/2:112:0,58,54:0:0:58,54:2066,1900:-323.418,-155.021,-137.561,-168.751,0,-152.495	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:15:0,14,1:0:0:14,1:496,36:-44.6148,-4.21442,0,-41.677,-0.917175,-41.376	1/2:9:0,2,7:0:0:2,7:72,249:-26.5242,-20.6484,-20.0463,-6.23466,0,-4.12745	1/2:9:0,4,5:0:0:4,5:144,168:-25.7058,-13.9455,-12.7414,-12.1095,0,-10.6043	1/2:8:0,6,2:0:0:6,2:216,72:-23.8592,-6.23466,-4.42848,-17.9843,0,-17.3823	1/2:243:0,122,120:0:0:122,120:4359,4281:-704.438,-349.035,-312.31,-355.449,0,-319.325	1/2:210:1,179,30:1:31:179,30:6408,1056:-605.789,-83.5196,-32.1224,-520.125,0,-513.582	1/2:75:0,59,15:0:0:59,15:2098,533:-214.401,-43.4286,-25.6678,-170.968,0,-166.452	.:.:.:.:.:.:.:.	1/2:124:0,58,63:0:0:58,63:2052,2239:-349.623,-182.485,-165.025,-167.168,0,-148.203	1/2:50:0,22,27:0:0:22,27:784,961:-142.224,-78.3189,-71.6963,-63.9016,0,-55.7738	1/2:235:0,174,61:0:0:174,61:6215,2129:-680.232,-173.514,-121.135,-507.068,0,-488.706	1/2:74:0,54,20:0:0:54,20:1944,703:-216.2,-57.5737,-41.318,-158.98,0,-152.96	1/2:75:0,42,32:0:0:42,32:1512,1136:-215.93,-92.5559,-79.9126,-123.372,0,-113.739	1/2:222:0,179,40:0:0:179,40:6412,1402:-637.006,-114.075,-60.1911,-522.923,0,-510.882	1/2:113:0,66,46:0:0:66,46:2372,1606:-324.137,-130.62,-110.752,-193.51,0,-179.663	1/2:200:0,108,91:0:0:108,91:3852,3170:-571.619,-257.608,-225.097,-314.003,0,-286.609	1/2:178:0,150,28:0:0:150,28:5368,981:-517.92,-80.1735,-35.019,-438.098,0,-429.669	1/2:187:0,133,53:0:0:133,53:4730,1857:-536.565,-151.093,-111.056,-385.464,0,-369.51	1/2:223:0,181,41:0:0:181,41:6483,1442:-646.088,-117.373,-62.8868,-528.708,0,-516.365	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/2:158:0,123,34:0:0:123,34:4388,1174:-453.075,-95.3679,-58.3412,-357.695,0,-347.46	1/2:48:0,28,20:0:0:28,20:1004,694:-138.655,-56.7593,-48.3304,-82.247,0,-76.2264	1/2:9:0,7,2:0:0:7,2:248,72:-26.4331,-6.23466,-4.12745,-20.557,0,-19.9549	1/2:136:0,56,77:0:0:56,77:1992,2702:-382.215,-2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chr02	21886615	.	G	C	80200.8	PASS	AB=0.473117;ABP=67.69;AC=93;AF=0.494681;AN=188;AO=4883;CIGAR=1X;DP=10314;DPB=10314;DPRA=112.087;EPP=10528.3;EPPR=11687.8;GTI=3;LEN=1;MEANALT=1.17391;MQM=59.959;MQMR=59.9978;NS=94;NUMALT=1;ODDS=0.238966;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173196;QR=193139;RO=5413;RPL=4874;RPP=10528.3;RPPR=11687.8;RPR=9;RUN=1;SAF=4883;SAP=10606.3;SAR=0;SRF=5413;SRP=11757.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:23,30:23:828:30:1076:-81.1983,0,-58.8895	0/1:98:56,42:56:2003:42:1496:-105.433,0,-151.042	0/1:140:61,79:61:2180:79:2819:-211.805,0,-154.322	0/1:113:59,54:59:2108:54:1904:-137.619,0,-155.973	0/1:94:73,21:73:2612:21:752:-39.7094,0,-207.031	0/1:10:7,3:7:252:3:93:-5.66643,0,-20.0187	0/1:83:52,28:52:1872:28:950:-61.3653,0,-144.317	0/1:186:103,82:103:3671:82:2895:-204.731,0,-274.544	0/1:81:37,44:37:1312:44:1572:-117.388,0,-93.9982	0/1:83:38,45:38:1352:45:1583:-117.772,0,-96.9949	0/1:77:35,42:35:1241:42:1480:-110.31,0,-88.8132	0/1:91:42,49:42:1496:49:1686:-124.625,0,-107.541	0/1:86:33,53:33:1169:53:1854:-141.245,0,-79.6267	0/1:80:43,37:43:1530:37:1292:-92.4912,0,-113.909	0/1:85:32,53:32:1140:53:1891:-144.878,0,-77.3217	0/1:55:28,27:28:976:27:949:-69.1661,0,-71.593	0/1:51:34,17:34:1224:17:612:-40.0609,0,-95.1145	0/1:36:20,16:20:703:16:576:-41.3379,0,-52.7564	0/1:32:17,15:17:608:15:510:-36.5866,0,-45.4191	0/1:398:236,162:236:8424:162:5749:-397.718,0,-638.352	0/1:101:56,45:56:1987:45:1585:-112.534,0,-148.7	0/1:154:69,85:69:2444:85:3017:-225.402,0,-173.855	0/1:78:39,39:39:1380:39:1372:-100.262,0,-101.018	0/1:135:86,49:86:3068:49:1739:-116.155,0,-235.711	0/1:82:31,51:31:1101:51:1785:-136.246,0,-74.7139	0/1:364:190,174:190:6811:174:6195:-448.001,0,-503.484	0/1:249:139,110:139:4964:110:3907:-276.869,0,-371.951	0/1:58:35,23:35:1221:23:816:-56.302,0,-92.7317	0/1:267:149,118:149:5317:118:4219:-299.514,0,-398.289	0/1:143:75,68:75:2684:68:2427:-175.638,0,-198.758	0/1:109:56,53:56:2004:53:1859:-134.772,0,-147.819	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:9:4,5:4:144:5:171:-13.0162,0,-10.6043	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:243:122,121:122:4349:121:4298:-313.844,0,-318.435	0/1:210:148,60:148:5277:60:2139:-129.802,0,-412.092	0/1:72:40,32:40:1422:32:1135:-80.7839,0,-106.602	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:122:58,64:58:2076:64:2279:-168.646,0,-150.385	0/1:49:22,27:22:760:27:963:-72.2355,0,-53.9654	0/1:230:113,116:113:4064:116:4152:-304.568,0,-296.649	0/1:73:42,31:42:1499:31:1112:-78.4162,0,-113.229	0/1:75:43,32:43:1525:32:1106:-77.2653,0,-114.964	0/1:218:126,92:126:4520:92:3292:-230.875,0,-341.342	0/1:114:67,47:67:2408:47:1658:-115.188,0,-182.659	0/1:195:106,89:106:3795:89:3173:-227.091,0,-283.047	0/1:176:127,49:127:4524:49:1744:-104.263,0,-354.346	0/1:187:91,96:91:3272:96:3418:-251.543,0,-238.406	0/1:221:135,85:135:4823:85:3039:-207.153,0,-367.639	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:160:79,81:79:2805:81:2839:-207.584,0,-204.524	0/1:46:19,27:19:676:27:954:-72.3266,0,-47.3206	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:136:60,76:60:2160:76:2687:-201.13,0,-153.727	0/1:46:21,25:21:739:25:879:-65.5794,0,-52.985	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	0/1:44:12,32:12:428:32:1140:-89.6639,0,-25.6135	0/1:159:75,83:75:2645:83:2934:-216.369,0,-190.374	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:232:108,124:108:3832:124:4411:-327.323,0,-275.238	0/1:317:209,108:209:7499:108:3807:-247.398,0,-579.522	0/1:89:50,39:50:1779:39:1388:-98.4273,0,-133.6	0/1:61:28,32:28:1004:32:1131:-83.676,0,-72.2543	0/1:196:121,75:121:4314:75:2661:-180.733,0,-329.435	0/1:115:40,75:40:1440:75:2676:-206.467,0,-95.2793	0/1:28:8,20:8:279:20:720:-56.6999,0,-17.0187	0/1:36:27,9:27:953:9:324:-18.6688,0,-75.2462	0/1:92:51,41:51:1804:41:1464:-104.357,0,-134.944	0/1:30:11,18:11:392:18:639:-48.7488,0,-26.5307	0/1:125:65,60:65:2328:60:2123:-153.708,0,-172.151	0/1:81:19,62:19:684:62:2199:-173.792,0,-37.5069	0/1:135:60,75:60:2144:75:2664:-199.365,0,-152.589	0/1:196:87,109:87:3116:109:3871:-289.585,0,-221.665	0/1:140:56,83:56:2008:83:2952:-223.857,0,-138.938	0/1:126:59,66:59:2099:66:2340:-172.866,0,-151.191	0/1:8:5,2:5:176:2:72:-4.36968,0,-13.7193	0/1:137:77,59:77:2760:59:2087:-146.8,0,-207.342	0/1:116:61,55:61:2166:55:1939:-139.866,0,-160.286	0/1:347:213,134:213:7616:134:4767:-324.733,0,-581.021	0/1:105:53,52:53:1896:52:1855:-135.607,0,-139.309	0/1:66:21,45:21:752:45:1581:-122.704,0,-48.1383	0/1:63:39,24:39:1400:24:851:-57.9446,0,-107.334	0/1:128:72,54:72:2553:54:1900:-132.983,0,-191.73	0/1:39:25,14:25:882:14:504:-33.9579,0,-67.9564	0/1:122:62,60:62:2205:60:2121:-154.431,0,-161.988	0/1:79:44,35:44:1554:35:1241:-88.2111,0,-116.369	0/1:42:15,26:15:540:26:932:-71.4969,0,-36.2345	0/1:145:72,73:72:2571:73:2599:-190.509,0,-187.99	0/1:87:44,43:44:1572:43:1520:-110.901,0,-115.582	0/1:177:66,111:66:2336:111:3952:-302.59,0,-157.216	0/1:126:46,80:46:1640:80:2849:-218.717,0,-109.959
chr02	21886786	.	G	T	119950	PASS	AB=0.552764;ABP=300.45;AC=95;AF=0.505319;AN=188;AO=6814;CIGAR=1X;DP=12316;DPB=12316;DPRA=0;EPP=14799.4;EPPR=11941.8;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9837;MQMR=59.9993;NS=94;NUMALT=1;ODDS=100.262;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243907;QR=196637;RO=5498;RPL=6814;RPP=14799.4;RPPR=11941.8;RPR=0;RUN=1;SAF=0;SAP=14799.4;SAR=6814;SRF=0;SRP=11941.8;SRR=5498;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:18,26:18:648:26:936:-71.3141,0,-45.4066	0/1:197:89,108:89:3180:108:3869:-289.1,0,-227.122	0/1:237:77,160:77:2749:160:5680:-439.973,0,-176.307	0/1:274:128,146:128:4592:146:5213:-386.826,0,-330.961	0/1:120:46,74:46:1633:74:2664:-203.881,0,-111.133	0/1:95:38,57:38:1360:57:2052:-156.353,0,-94.1027	0/1:140:68,72:68:2432:72:2584:-190.665,0,-176.991	0/1:208:108,100:108:3855:100:3566:-258.531,0,-284.532	0/1:124:65,59:65:2336:59:2104:-152.302,0,-173.172	0/1:113:67,46:67:2392:46:1652:-114.952,0,-181.521	0/1:50:25,25:25:887:25:900:-66.2695,0,-65.0966	0/1:96:56,40:56:2008:40:1432:-100.279,0,-152.094	0/1:77:40,37:40:1440:37:1332:-97.0031,0,-106.718	0/1:58:33,25:33:1184:25:900:-63.8613,0,-89.4086	0/1:85:42,43:42:1512:43:1548:-114.026,0,-110.787	0/1:52:27,25:27:972:25:896:-65.3068,0,-72.1443	0/1:75:42,33:42:1487:33:1182:-84.1061,0,-111.547	0/1:65:43,22:43:1544:22:792:-52.0387,0,-119.686	0/1:38:24,14:24:856:14:493:-33.2625,0,-65.922	0/1:545:209,335:209:7469:335:11935:-910.035,0,-508.283	0/1:213:99,114:99:3541:114:4100:-305.064,0,-254.778	0/1:183:58,125:58:2076:125:4466:-347.02,0,-132.022	0/1:124:53,71:53:1900:71:2537:-190.982,0,-133.95	0/1:110:46,64:46:1648:64:2259:-170.455,0,-115.495	0/1:95:35,60:35:1228:60:2156:-165.709,0,-82.2232	0/1:470:246,224:246:8808:224:7997:-578.265,0,-651.223	0/1:241:95,146:95:3381:146:5221:-397.479,0,-231.957	0/1:53:30,23:30:1080:23:828:-58.8895,0,-81.5587	0/1:327:109,217:109:3904:217:7781:-601.551,0,-253.058	0/1:135:63,72:63:2264:72:2567:-190.639,0,-163.383	0/1:201:71,130:71:2517:130:4658:-358.875,0,-166.274	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.439	0/1:19:7,12:7:248:12:417:-32.1406,0,-16.9446	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:15:5,10:5:180:10:352:-27.5027,0,-12.0366	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:271:131,140:131:4694:140:5032:-371.445,0,-341.039	0/1:303:117,185:117:4176:185:6613:-503.977,0,-284.753	0/1:53:29,24:29:1031:24:860:-61.7672,0,-77.148	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:220:94,126:94:3345:126:4488:-337.861,0,-235.04	0/1:49:25,24:25:900:24:860:-62.9714,0,-66.5705	0/1:162:85,77:85:3033:77:2772:-200.953,0,-224.432	0/1:97:48,49:48:1728:49:1764:-129.844,0,-126.605	0/1:93:55,38:55:1967:38:1368:-95.425,0,-149.309	0/1:74:28,46:28:1004:46:1656:-127.052,0,-68.3996	0/1:177:50,127:50:1767:127:4547:-356.112,0,-106.03	0/1:385:127,258:127:4537:258:9227:-714.499,0,-292.6	0/1:166:57,109:57:2033:109:3889:-300.233,0,-133.269	0/1:210:92,118:92:3296:118:4244:-318.921,0,-233.643	0/1:189:97,92:97:3457:92:3308:-241.043,0,-254.447	0/1:20:3,17:3:108:17:608:-49.0314,0,-4.05457	0/1:217:82,135:82:2940:135:4852:-371.508,0,-199.51	0/1:50:22,28:22:788:28:1008:-75.9849,0,-56.1933	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/1:170:57,113:57:2036:113:4045:-313.061,0,-132.337	0/1:48:32,15:32:1152:15:536:-34.0667,0,-89.4819	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	0/1:45:25,20:25:900:20:711:-50.7693,0,-67.7747	0/1:44:24,20:24:856:20:716:-51.5224,0,-64.1158	0/1:177:94,83:94:3380:83:2988:-215.869,0,-251.132	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:328:166,162:166:5944:162:5822:-425.352,0,-436.33	0/1:230:98,132:98:3504:132:4744:-357.879,0,-246.334	0/1:72:45,27:45:1593:27:968:-65.7632,0,-121.984	0/1:141:48,93:48:1709:93:3302:-254.952,0,-111.649	0/1:229:76,153:76:2716:153:5481:-424.479,0,-175.748	0/1:191:66,125:66:2349:125:4441:-342.337,0,-154.171	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:82:42,40:42:1508:40:1423:-103.681,0,-111.33	0/1:155:104,51:104:3711:51:1836:-118.861,0,-287.533	0/1:24:4,20:4:144:20:720:-57.9041,0,-6.0889	0/1:81:30,51:30:1064:51:1828:-140.418,0,-71.6882	0/1:79:36,43:36:1292:43:1544:-115.472,0,-92.8024	0/1:148:77,71:77:2752:71:2522:-182.668,0,-203.37	0/1:195:89,106:89:3180:106:3762:-280.076,0,-227.724	0/1:215:76,139:76:2732:139:4992:-384.705,0,-181.401	0/1:143:70,73:70:2512:73:2601:-191.29,0,-183.285	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:168:66,102:66:2356:102:3664:-279.39,0,-161.726	0/1:150:42,108:42:1508:108:3888:-304.958,0,-90.8601	0/1:230:91,139:91:3264:139:4977:-378.839,0,-224.743	0/1:194:108,86:108:3880:86:3061:-217.319,0,-290.993	0/1:58:32,26:32:1152:26:936:-67.0997,0,-86.5304	0/1:101:66,35:66:2359:35:1260:-83.3015,0,-182.164	0/1:166:93,73:93:3320:73:2628:-186.796,0,-249.045	0/1:81:43,38:43:1548:38:1364:-98.6773,0,-115.23	0/1:95:56,39:56:2004:39:1400:-97.7013,0,-152.036	0/1:93:58,35:58:2088:35:1260:-85.7097,0,-160.194	0/1:26:14,12:14:491:12:417:-30.0334,0,-36.6943	0/1:88:45,43:45:1608:43:1548:-113.122,0,-118.519	0/1:94:47,47:47:1692:47:1684:-123.55,0,-124.27	0/1:138:67,71:67:2396:71:2537:-187.037,0,-174.355	0/1:110:61,49:61:2170:49:1764:-125.93,0,-162.452
chr02	21886798	.	A	T	145415	PASS	AB=0.401387;ABP=1635.59;AC=94;AF=0.5;AN=188;AO=7758;CIGAR=1X;DP=19328;DPB=19328;DPRA=0;EPP=16849.3;EPPR=25126.9;GTI=0;LEN=1;MEANALT=1;MQM=59.9884;MQMR=59.9918;NS=94;NUMALT=1;ODDS=86.5878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277679;QR=413952;RO=11570;RPL=6746;RPP=9205.81;RPPR=98.6895;RPR=1012;RUN=1;SAF=1012;SAP=9205.81;SAR=6746;SRF=6142;SRP=98.6895;SRR=5428;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:41,24:41:1464:24:860:-58.1549,0,-112.489	0/1:309:203,106:203:7273:106:3796:-248.82,0,-561.601	0/1:289:131,158:131:4700:158:5661:-422.609,0,-336.161	0/1:407:265,142:265:9492:142:5080:-334.825,0,-731.719	0/1:218:116,102:116:4164:102:3639:-262.091,0,-309.317	0/1:184:101,83:101:3632:83:2972:-212.323,0,-271.672	0/1:254:181,73:181:6488:73:2612:-158.866,0,-507.542	0/1:302:204,98:204:7312:98:3493:-223.669,0,-567.218	0/1:196:137,59:137:4876:59:2112:-131.347,0,-379.994	0/1:168:120,48:120:4300:48:1728:-105.232,0,-336.603	0/1:89:63,26:63:2260:26:936:-57.7678,0,-176.871	0/1:162:119,43:119:4272:43:1544:-90.4862,0,-335.89	0/1:146:107,39:107:3833:39:1404:-82.7089,0,-301.214	0/1:130:78,52:78:2784:52:1868:-129.265,0,-211.041	0/1:200:124,76:124:4456:76:2728:-185.557,0,-341.003	0/1:134:87,47:87:3105:47:1692:-112.229,0,-239.338	0/1:135:102,33:102:3617:33:1180:-65.8644,0,-285.095	0/1:144:94,50:94:3384:50:1800:-118.934,0,-261.426	0/1:83:68,15:68:2436:15:540:-23.951,0,-194.51	0/1:645:283,362:283:10144:362:12892:-965.933,0,-718.725	0/1:437:239,198:239:8552:198:7073:-505.08,0,-638.129	0/1:202:80,122:80:2856:122:4342:-330.146,0,-196.47	0/1:192:121,71:121:4332:71:2525:-169.703,0,-332.258	0/1:249:133,116:133:4726:116:4144:-298.188,0,-350.543	0/1:151:94,57:94:3341:57:2014:-136.074,0,-255.452	0/1:638:419,219:419:14918:219:7853:-514.737,0,-1150.29	0/1:351:207,144:207:7378:144:5160:-358.879,0,-558.407	0/1:99:76,23:76:2713:23:828:-45.0421,0,-214.61	0/1:462:244,218:244:8752:218:7794:-561.711,0,-647.965	0/1:186:113,73:113:4018:73:2608:-178.977,0,-305.816	0/1:315:142,173:142:5072:173:6193:-462.643,0,-361.801	0/1:35:27,8:27:957:8:288:-15.7314,0,-75.9078	0/1:26:14,12:14:500:12:432:-31.3944,0,-37.5094	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:24:14,10:14:496:10:356:-25.1565,0,-37.7495	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:495:349,146:349:12481:146:5240:-322.726,0,-974.113	0/1:349:166,183:166:5944:183:6541:-483.713,0,-430.008	0/1:147:100,47:100:3588:47:1679:-107.145,0,-278.875	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:316:190,126:190:6808:126:4512:-311.122,0,-517.665	0/1:79:53,26:53:1900:26:936:-60.7781,0,-147.497	0/1:229:156,73:156:5588:73:2616:-166.752,0,-434.107	0/1:193:140,53:140:4997:53:1908:-113.899,0,-391.779	0/1:222:138,84:138:4956:84:3012:-204.482,0,-379.357	0/1:142:97,45:97:3472:45:1608:-102.264,0,-269.946	0/1:317:142,175:142:5065:175:6265:-468.515,0,-360.569	0/1:465:211,254:211:7541:254:9101:-679.083,0,-538.749	0/1:195:87,108:87:3120:108:3868:-289.614,0,-222.325	0/1:275:154,121:154:5516:121:4329:-307.001,0,-413.782	0/1:278:186,92:186:6657:92:3300:-213.532,0,-515.52	0/1:27:8,19:8:288:19:684:-53.7625,0,-18.1396	0/1:299:166,133:166:5937:133:4776:-339.987,0,-444.429	0/1:75:48,27:48:1705:27:968:-64.8601,0,-131.157	0/1:20:12,8:12:413:8:288:-20.2468,0,-31.4772	0/1:247:111,136:111:3972:136:4877:-364.725,0,-283.317	0/1:85:69,16:69:2480:16:576:-26.5874,0,-197.866	0/1:27:11,16:11:396:16:568:-43.3241,0,-27.8549	0/1:60:39,21:39:1392:21:752:-49.9445,0,-107.517	0/1:97:76,21:76:2724:21:752:-38.8063,0,-216.203	0/1:319:198,121:198:7104:121:4348:-295.465,0,-543.388	0/1:13:10,3:10:356:3:100:-5.41705,0,-28.4679	0/1:401:239,162:239:8519:162:5816:-402.838,0,-645.996	0/1:352:181,171:181:6462:171:6124:-445.297,0,-475.702	0/1:110:80,30:80:2860:30:1038:-60.6118,0,-224.524	0/1:180:88,92:88:3145:92:3288:-241.955,0,-229.089	0/1:389:179,210:179:6412:210:7516:-559.381,0,-460.067	0/1:255:130,125:130:4656:125:4447:-323.612,0,-342.439	0/1:30:20,10:20:720:10:360:-23.7134,0,-56.0979	0/1:135:95,40:95:3412:40:1421:-87.5382,0,-266.654	0/1:292:188,104:188:6740:104:3698:-245.12,0,-518.772	0/1:34:15,19:15:536:19:684:-51.6553,0,-38.3374	0/1:109:56,53:56:2012:53:1908:-139.185,0,-148.541	0/1:181:108,73:108:3872:73:2609:-180.57,0,-294.188	0/1:271:200,71:200:7149:71:2552:-148.343,0,-561.888	0/1:264:160,104:160:5708:104:3736:-256.967,0,-434.368	0/1:297:160,137:160:5744:137:4903:-352.015,0,-427.668	0/1:227:153,74:153:5469:74:2656:-170.952,0,-424.003	0/1:19:12,7:12:432:7:248:-16.9446,0,-33.5016	0/1:236:132,104:132:4752:104:3740:-265.756,0,-356.792	0/1:249:110,139:110:3903:139:4961:-371.683,0,-276.505	0/1:332:195,137:195:6992:137:4909:-342.017,0,-529.4	0/1:290:201,89:201:7176:89:3200:-200.923,0,-558.597	0/1:115:87,28:87:3124:28:1008:-56.4179,0,-246.767	0/1:243:145,98:145:5185:98:3508:-242.78,0,-393.638	0/1:313:239,74:239:8544:74:2626:-142.362,0,-674.733	0/1:152:96,56:96:3448:56:2012:-135.597,0,-264.775	0/1:160:118,42:118:4228:42:1504:-87.4898,0,-332.535	0/1:157:119,38:119:4276:38:1364:-75.799,0,-337.755	0/1:46:33,13:33:1180:13:464:-28.2501,0,-92.6607	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chr02	21886861	.	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chr02	21886870	.	C	T	9569.9	PASS	AB=0.242225;ABP=2545.4;AC=27;AF=0.143617;AN=188;AO=1101;CIGAR=1X;DP=16045;DPB=16045;DPRA=0.878472;EPP=2385.12;EPPR=32178.2;GTI=5;LEN=1;MEANALT=1.05;MQM=59.8819;MQMR=59.9861;NS=94;NUMALT=1;ODDS=2.58521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39393;QR=532756;RO=14937;RPL=1101;RPP=2393.8;RPPR=32178.2;RPR=0;RUN=1;SAF=1;SAP=2385.12;SAR=1100;SRF=0;SRP=32438.3;SRR=14937;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:104:104,0:104:3688:0:0:0,-31.3071,-332.123	0/0:184:184,0:184:6552:0:0:0,-55.3895,-589.764	0/0:240:239,0:239:8542:0:0:0,-71.9462,-768.402	0/0:328:328,0:328:11695:0:0:0,-98.7378,-1052.42	0/1:106:84,22:84:3005:22:788:-39.2492,0,-238.77	0/1:96:70,26:70:2478:26:917:-53.9457,0,-194.375	0/0:263:263,0:263:9393:0:0:0,-79.1709,-845.065	0/0:251:250,1:250:8896:1:36:0,-71.9603,-797.028	0/0:242:242,0:242:8637:0:0:0,-72.8493,-777.326	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.889	0/0:215:214,1:214:7651:1:36:0,-61.1232,-685.028	0/0:208:208,0:208:7410:0:0:0,-62.6142,-666.95	0/0:139:138,1:138:4939:1:36:0,-38.2449,-441.053	0/1:210:159,51:159:5683:51:1832:-101.944,0,-448.373	0/1:116:88,28:88:3139:28:1008:-56.1169,0,-247.816	0/1:160:130,30:130:4659:30:1080:-49.3485,0,-371.306	0/0:135:134,1:134:4795:1:36:0,-37.0408,-428.107	0/1:109:91,18:91:3268:18:637:-24.7745,0,-261.527	0/0:121:121,0:121:4336:0:0:0,-36.4246,-390.415	0/1:268:214,54:214:7647:54:1932:-93.4805,0,-607.591	0/1:314:227,87:227:8100:87:3128:-187.222,0,-634.495	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:192:192,0:192:6855:0:0:0,-57.7978,-617.021	0/0:213:198,14:198:7037:14:504:0,-18.4801,-587.696	0/0:130:130,0:130:4647:0:0:0,-39.1339,-418.392	0/0:379:379,0:379:13539:0:0:0,-114.09,-1218.3	0/0:384:384,0:384:13706:0:0:0,-115.596,-1233.32	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.793	0/0:391:391,0:391:13985:0:0:0,-117.703,-1258.42	0/0:162:162,0:162:5789:0:0:0,-48.7669,-521.124	0/1:226:184,42:184:6572:42:1503:-67.5317,0,-523.531	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:40:28,12:28:995:12:432:-27.1718,0,-77.8228	0/0:34:34,0:34:1199:0:0:0,-10.235,-108.21	0/0:345:345,0:345:12313:0:0:0,-103.855,-1108.01	0/0:159:159,0:159:5652:0:0:0,-47.8638,-508.803	0/1:187:151,36:151:5388:36:1296:-60.6513,0,-428.758	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/0:191:191,0:191:6795:0:0:0,-57.4967,-611.624	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:269:269,0:269:9588:0:0:0,-80.9771,-861.86	0/0:129:129,0:129:4590:0:0:0,-38.8329,-413.266	0/1:117:89,28:89:3162:28:999:-55.004,0,-249.585	0/0:116:116,0:116:4124:0:0:0,-34.9195,-371.078	0/1:159:109,50:109:3891:50:1785:-112.129,0,-302.521	0/0:210:209,0:209:7462:0:0:0,-62.9153,-671.266	0/0:150:150,0:150:5335:0:0:0,-45.1545,-480.284	0/0:273:273,0:273:9731:0:0:0,-82.1812,-875.742	0/0:261:261,0:261:9296:0:0:0,-78.5688,-836.609	0/1:24:18,6:18:648:6:210:-12.0173,0,-51.4272	0/0:211:211,0:211:7533:0:0:0,-63.5173,-677.956	0/0:129:129,0:129:4605:0:0:0,-38.8329,-414.613	0/0:27:25,2:25:900:2:72:0,-1.29109,-74.4843	0/1:270:208,62:208:7415:62:2224:-119.146,0,-586.117	0/0:91:89,2:89:3157:2:72:0,-20.557,-277.519	0/1:22:14,8:14:495:8:281:-19.0073,0,-38.2604	0/1:32:19,13:19:676:13:453:-31.4667,0,-51.535	0/0:197:196,1:196:7016:1:36:0,-55.7046,-627.905	0/1:251:191,60:191:6822:60:2152:-118.389,0,-538.493	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/0:181:181,0:181:6460:0:0:0,-54.4864,-581.486	0/1:351:256,94:256:9117:94:3369:-197.702,0,-714.772	0/0:124:122,2:122:4355:2:72:0,-30.491,-385.289	0/0:197:197,0:197:6973:0:0:0,-59.3029,-627.638	0/1:245:179,66:179:6366:66:2338:-136.923,0,-499.275	0/0:214:214,0:214:7597:0:0:0,-64.4204,-683.773	0/0:128:128,0:128:4579:0:0:0,-38.5318,-412.273	0/0:123:123,0:123:4357:0:0:0,-37.0267,-392.305	0/1:184:148,36:148:5249:36:1288:-60.8341,0,-417.159	0/0:51:50,1:50:1752:1:36:0,-11.7543,-154.363	0/0:109:109,0:109:3882:0:0:0,-32.8123,-349.575	0/1:116:85,31:85:3006:31:1112:-65.4719,0,-235.842	0/0:423:423,0:423:15045:0:0:0,-127.336,-1353.65	0/0:179:178,1:178:6344:1:36:0,-50.2861,-567.454	0/0:170:170,0:170:6065:0:0:0,-51.1751,-545.954	0/0:222:222,0:222:7935:0:0:0,-66.8287,-714.175	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:150:150,0:150:5344:0:0:0,-45.1545,-481.094	0/1:170:128,42:128:4564:42:1500:-84.1189,0,-359.753	0/0:396:394,0:394:14064:0:0:0,-118.606,-1265.17	0/0:180:180,0:180:6440:0:0:0,-54.1854,-579.687	0/0:137:137,0:137:4891:0:0:0,-41.2411,-440.343	0/1:111:86,25:86:3076:25:900:-47.8004,0,-243.654	0/0:234:234,0:234:8344:0:0:0,-70.441,-750.969	0/0:76:70,6:70:2508:6:216:0,-3.08777,-206.182	0/0:156:155,0:155:5551:0:0:0,-46.6596,-499.473	0/0:144:144,0:144:5145:0:0:0,-43.3483,-463.19	0/0:165:165,0:165:5912:0:0:0,-49.6699,-532.188	0/1:360:280,80:280:9991:80:2849:-148.275,0,-790.632	0/1:148:92,56:92:3253:56:2012:-136.798,0,-248.44	0/0:111:111,0:111:3952:0:0:0,-33.4143,-355.871	0/0:222:221,1:221:7894:1:36:0,-63.2304,-706.889
chr02	21886876	.	C	T	9291.46	PASS	AB=0.240584;ABP=2563.84;AC=27;AF=0.143617;AN=188;AO=1087;CIGAR=1X;DP=15962;DPB=15962;DPRA=0.922198;EPP=2363.4;EPPR=32236.4;GTI=5;LEN=1;MEANALT=1.07692;MQM=59.9411;MQMR=59.9857;NS=94;NUMALT=1;ODDS=5.2656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38873;QR=529849;RO=14868;RPL=1087;RPP=2363.4;RPPR=32236.4;RPR=0;RUN=1;SAF=0;SAP=2363.4;SAR=1087;SRF=0;SRP=32288.5;SRR=14868;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:106:106,0:106:3776:0:0:0,-31.9092,-340.041	0/0:181:181,0:181:6455:0:0:0,-54.4864,-581.036	0/0:239:239,0:239:8505:0:0:0,-71.9462,-765.438	0/0:329:329,0:329:11756:0:0:0,-99.0389,-1057.91	0/1:108:87,21:87:3085:21:756:-35.7695,0,-245.367	0/1:99:74,25:74:2625:25:900:-51.519,0,-206.695	0/0:255:255,0:255:9050:0:0:0,-76.7626,-814.213	0/0:246:245,1:245:8711:1:36:0,-70.4551,-780.386	0/0:239:239,0:239:8521:0:0:0,-71.9462,-766.893	0/0:125:125,0:125:4472:0:0:0,-37.6287,-402.65	0/0:222:222,0:222:7889:0:0:0,-66.8287,-710.042	0/0:203:203,0:203:7229:0:0:0,-61.1091,-650.667	0/0:136:135,1:135:4832:1:36:0,-37.3418,-431.428	0/1:206:155,51:155:5528:51:1832:-103.149,0,-435.633	0/1:115:87,28:87:3116:28:1000:-55.6969,0,-246.048	0/1:162:131,31:131:4676:31:1116:-51.9848,0,-372.233	0/0:136:136,0:136:4813:0:0:0,-40.9401,-433.33	0/1:111:93,18:93:3319:18:641:-24.5338,0,-265.514	0/0:121:121,0:121:4335:0:0:0,-36.4246,-390.324	0/1:266:213,53:213:7610:53:1908:-91.9236,0,-604.862	0/1:307:222,85:222:7880:85:3024:-179.972,0,-616.817	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.814	0/0:196:194,1:194:6885:1:36:0,-55.4624,-616.124	0/0:211:197,14:197:7046:14:489:0,-19.1784,-589.859	0/0:129:129,0:129:4593:0:0:0,-38.8329,-413.536	0/0:382:382,0:382:13594:0:0:0,-114.993,-1223.25	0/0:380:380,0:380:13530:0:0:0,-114.391,-1217.49	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/0:397:396,0:396:14109:0:0:0,-119.208,-1269.22	0/0:169:169,0:169:5986:0:0:0,-50.8741,-538.848	0/1:227:185,42:185:6544:42:1508:-67.6808,0,-520.712	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:58:58,0:58:2031:0:0:0,-17.4597,-183.057	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:40:28,12:28:996:12:418:-25.9099,0,-77.9137	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.625	0/0:342:342,0:342:12181:0:0:0,-102.952,-1096.14	0/0:151:151,0:151:5408:0:0:0,-45.4555,-486.85	0/1:187:150,36:150:5335:36:1281:-59.2408,0,-423.936	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/0:188:188,0:188:6727:0:0:0,-56.5936,-605.505	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:261:261,0:261:9325:0:0:0,-78.5688,-838.516	0/0:130:130,0:130:4601:0:0:0,-39.1339,-414.258	0/1:123:95,28:95:3389:28:1008:-54.0097,0,-268.198	0/0:121:121,0:121:4297:0:0:0,-36.4246,-386.897	0/1:155:107,48:107:3836:48:1728:-109.146,0,-298.768	0/0:211:211,0:211:7502:0:0:0,-63.5173,-675.223	0/0:145:145,0:145:5131:0:0:0,-43.6493,-461.933	0/0:276:276,0:276:9852:0:0:0,-83.0843,-886.628	0/0:259:259,0:259:9208:0:0:0,-77.9668,-828.692	0/1:24:18,6:18:648:6:210:-12.0173,0,-51.4272	0/0:211:211,0:211:7548:0:0:0,-63.5173,-679.305	0/0:133:132,0:132:4697:0:0:0,-39.736,-422.532	0/0:27:25,2:25:900:2:72:0,-1.29109,-74.4843	0/1:269:207,62:207:7393:62:2224:-119.447,0,-584.44	0/0:92:89,2:89:3161:2:72:0,-20.9168,-277.878	0/1:22:14,8:14:504:8:281:-19.0073,0,-39.0754	0/1:32:19,13:19:680:13:468:-32.8267,0,-51.8962	0/0:201:200,1:200:7117:1:36:0,-56.9088,-636.992	0/1:250:190,60:190:6796:60:2141:-117.7,0,-536.455	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:180:180,0:180:6414:0:0:0,-54.1854,-577.348	0/1:353:262,91:262:9334:91:3261:-187.445,0,-733.744	0/0:125:123,2:123:4385:2:66:0,-31.3608,-388.555	0/0:200:200,0:200:7110:0:0:0,-60.206,-639.959	0/1:244:179,65:179:6342:65:2306:-134.347,0,-497.425	0/0:212:211,0:211:7539:0:0:0,-63.5173,-678.192	0/0:124:124,0:124:4412:0:0:0,-37.3277,-397.248	0/0:121:120,0:120:4281:0:0:0,-36.1236,-385.108	0/1:181:145,36:145:5182:36:1288:-61.7372,0,-412.033	0/0:49:48,1:48:1716:1:36:0,-11.1522,-151.127	0/0:110:110,0:110:3943:0:0:0,-33.1133,-355.061	0/1:112:81,31:81:2908:31:1112:-66.676,0,-228.231	0/0:413:413,0:413:14677:0:0:0,-124.325,-1320.19	0/0:175:174,1:174:6211:1:36:0,-49.082,-555.49	0/0:171:171,0:171:6067:0:0:0,-51.4761,-546.134	0/0:222:222,0:222:7952:0:0:0,-66.8287,-715.703	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:148:148,0:148:5296:0:0:0,-44.5524,-476.775	0/1:174:132,42:132:4728:42:1500:-82.9154,0,-373.299	0/0:398:397,1:397:14209:1:36:0,-116.212,-1274.97	0/0:179:179,0:179:6332:0:0:0,-53.8844,-569.974	0/0:131:131,0:131:4670:0:0:0,-39.4349,-420.462	0/1:106:83,23:83:2956:23:828:-42.9349,0,-234.365	0/0:227:227,0:227:8099:0:0:0,-68.3338,-728.93	0/0:74:68,6:68:2433:6:216:0,-2.48571,-199.433	0/0:153:153,0:153:5464:0:0:0,-46.0576,-491.89	0/0:146:146,0:146:5217:0:0:0,-43.9504,-469.177	0/0:164:164,0:164:5824:0:0:0,-49.3689,-524.276	0/1:358:278,80:278:9892:80:2862:-150.047,0,-782.457	0/1:137:82,55:82:2923:55:1961:-135.52,0,-222.064	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.553	0/0:222:222,0:222:7935:0:0:0,-66.8287,-714.175
chr02	21886931	.	A	G	49476.4	PASS	AB=0.229031;ABP=10191.8;AC=47;AF=0.25;AN=188;AO=3712;CIGAR=1X;DP=32185;DPB=32185;DPRA=1.55193;EPP=8046.15;EPPR=61744.5;GTI=4;LEN=1;MEANALT=1.08219;MQM=59.9881;MQMR=59.9806;NS=94;NUMALT=1;ODDS=10.3828;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130668;QR=1015459;RO=28465;RPL=1868;RPP=3.34725;RPPR=16.2755;RPR=1844;RUN=1;SAF=1870;SAP=3.46893;SAR=1842;SRF=14030;SRP=15.5231;SRR=14435;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:202:163,39:163:5786:39:1370:-62.789,0,-460.046	0/0:462:462,0:462:16464:0:0:0,-139.076,-1481.43	0/0:501:501,0:501:17854:0:0:0,-150.816,-1606.47	0/1:785:613,172:613:21832:172:6063:-309.467,0,-1728.02	0/1:216:162,54:162:5792:54:1873:-103.82,0,-456.37	0/1:178:142,36:142:5053:36:1276:-61.5575,0,-401.331	0/1:360:281,79:281:10060:79:2811:-144.859,0,-796.94	0/0:588:586,2:586:20892:2:72:0,-170.169,-1872.93	0/1:498:371,127:371:13233:127:4497:-254.989,0,-1040.82	0/1:389:304,85:304:10882:85:3027:-155.559,0,-862.178	0/0:246:245,1:245:8750:1:36:0,-70.4551,-783.892	0/1:372:280,92:280:9975:92:3236:-179.478,0,-785.709	0/0:259:259,0:259:9233:0:0:0,-77.9668,-830.94	0/0:271:269,2:269:9593:2:72:0,-74.7424,-856.121	0/0:255:254,1:254:9107:1:36:0,-73.1644,-815.227	0/1:240:186,54:186:6605:54:1873:-96.5995,0,-522.279	0/0:274:273,1:273:9732:1:36:0,-78.8839,-872.234	0/0:169:169,0:169:6018:0:0:0,-50.8741,-541.727	0/1:161:124,37:124:4425:37:1301:-68.9232,0,-349.955	0/1:629:507,122:507:18097:122:4237:-192.162,0,-1438.98	0/1:671:534,137:534:19015:137:4836:-233.403,0,-1508.93	0/0:200:199,1:199:7107:1:32:0,-57.0067,-636.489	0/0:434:434,0:434:15479:0:0:0,-130.647,-1392.81	0/0:428:418,10:418:14899:10:352:0,-96.8226,-1308.62	0/1:326:237,89:237:8436:89:3113:-182.262,0,-661.11	0/0:930:926,3:926:33037:3:108:0,-269.942,-2962.21	0/1:754:611,143:611:21782:143:5049:-227.579,0,-1732.85	0/1:151:102,49:102:3620:49:1737:-111.157,0,-280.55	0/0:631:630,1:630:22543:1:36:0,-186.352,-2024.68	0/1:406:328,78:328:11716:78:2770:-127.323,0,-932.084	0/0:420:419,0:419:14964:0:0:0,-126.132,-1346.13	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:38:37,1:37:1315:1:32:0,-8.23983,-115.452	0/0:39:39,0:39:1382:0:0:0,-11.7402,-124.677	0/0:48:48,0:48:1698:0:0:0,-14.4494,-153.105	0/1:42:35,7:35:1260:7:252:-10.3857,0,-101.054	0/0:905:904,1:904:32340:1:36:0,-268.834,-2906	0/1:420:339,81:339:12098:81:2877:-132.734,0,-962.192	0/1:239:189,50:189:6742:50:1751:-85.9264,0,-534.91	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:470:466,4:466:16605:4:144:0,-128.17,-1480.8	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.887	0/1:541:429,112:429:15311:112:3922:-190.318,0,-1214.85	0/1:443:317,126:317:11293:126:4430:-265.515,0,-882.899	0/0:281:281,0:281:10033:0:0:0,-84.5894,-902.908	0/1:375:298,77:298:10613:77:2702:-130.538,0,-842.176	0/0:379:376,2:376:13411:2:72:0,-107.286,-1199.96	0/0:514:513,1:513:18355:1:36:0,-151.131,-1647.84	0/1:253:205,48:205:7310:48:1693:-76.4934,0,-581.79	0/1:504:386,118:386:13775:118:4224:-228.619,0,-1087.8	0/1:477:366,111:366:13077:111:3901:-207.698,0,-1033.15	0/1:51:45,6:45:1612:6:197:-2.6988,0,-130.018	0/1:415:311,104:311:11128:104:3708:-208.985,0,-876.483	0/1:202:141,61:141:5022:61:2148:-132.778,0,-391.163	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:514:513,1:513:18248:1:36:0,-151.131,-1638.32	0/1:191:136,55:136:4867:55:1942:-117.557,0,-380.686	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/1:73:53,20:53:1892:20:716:-42.7925,0,-148.583	0/1:368:290,77:290:10291:77:2715:-133.755,0,-815.283	0/0:405:403,2:403:14387:2:68:0,-115.459,-1288.13	0/1:34:26,8:26:909:8:284:-15.6683,0,-71.888	0/1:365:289,76:289:10299:76:2694:-132.828,0,-816.397	0/0:698:696,2:696:24806:2:72:0,-203.282,-2225.02	0/1:302:232,70:232:8255:70:2488:-133.26,0,-652.054	0/0:297:297,0:297:10597:0:0:0,-89.4059,-953.645	0/1:628:479,149:479:17046:149:5244:-283.053,0,-1344.66	0/0:523:519,3:519:18534:3:108:0,-147.392,-1656.54	0/1:140:106,34:106:3792:34:1174:-63.8156,0,-299.334	0/1:242:189,53:189:6736:53:1864:-95.1842,0,-533.467	0/0:327:327,0:327:11676:0:0:0,-98.4368,-1050.71	0/0:94:94,0:94:3338:0:0:0,-28.2968,-300.638	0/0:350:349,1:349:12460:1:36:0,-101.762,-1117.64	0/0:298:297,1:297:10578:1:36:0,-86.1087,-948.339	0/0:486:482,3:482:17147:3:108:0,-136.172,-1532.84	0/0:494:494,0:494:17638:0:0:0,-148.709,-1587.04	0/1:357:253,104:253:9038:104:3653:-221.505,0,-705.929	0/1:406:306,100:306:10914:100:3540:-196.591,0,-859.942	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:358:356,2:356:12681:2:72:0,-100.932,-1134.28	0/1:285:241,44:241:8604:44:1545:-53.5462,0,-688.555	0/0:613:613,0:613:21894:0:0:0,-184.531,-1969.9	0/0:331:330,0:330:11768:0:0:0,-99.3399,-1058.62	0/0:205:203,2:203:7279:2:72:0,-54.8744,-648.32	0/0:387:385,2:385:13781:2:72:0,-109.662,-1233.23	0/1:596:454,142:454:16170:142:4976:-268.579,0,-1275.41	0/1:172:120,51:120:4288:51:1809:-111.254,0,-334.254	0/1:284:228,56:228:8135:56:1970:-92.0814,0,-646.668	0/1:296:231,65:231:8253:65:2218:-110.773,0,-653.676	0/1:119:79,40:79:2823:40:1385:-89.1223,0,-218.486	0/1:414:321,93:321:11451:93:3202:-163.778,0,-905.837	0/1:404:276,128:276:9842:128:4487:-282.385,0,-764.112	0/0:343:342,1:342:12200:1:36:0,-99.655,-1094.25	0/0:480:478,2:478:17040:2:72:0,-137.658,-1526.41
chr02	21886952	.	C	A	330345	PASS	AB=0.454366;ABP=589.048;AC=94;AF=0.5;AN=188;AO=14721;CIGAR=1X;DP=32399;DPB=32399;DPRA=0;EPP=31960.6;EPPR=38294.8;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.9702;MQMR=59.9934;NS=94;NUMALT=1;ODDS=89.6063;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=526232;QR=624446;RO=17670;RPL=7167;RPP=25.1025;RPPR=3.01227;RPR=7554;RUN=1;SAF=7166;SAP=25.3314;SAR=7555;SRF=8828;SRP=3.03439;SRR=8842;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:201:72,129:72:2542:129:4596:-353.289,0,-168.522	0/1:473:218,255:218:7711:255:9104:-676.948,0,-551.641	0/1:515:260,255:260:9143:255:9098:-663.764,0,-667.819	0/1:787:360,427:360:12697:427:15278:-1137.82,0,-905.651	0/1:214:148,66:148:5266:66:2359:-148.147,0,-409.627	0/1:183:128,55:128:4497:55:1967:-122.216,0,-349.814	0/1:362:165,197:165:5845:197:7058:-526.294,0,-417.192	0/1:590:284,306:284:9941:306:10976:-810.125,0,-717.033	0/1:498:237,261:237:8329:261:9330:-689.722,0,-599.712	0/1:396:190,205:190:6722:205:7323:-539.982,0,-485.922	0/1:244:113,131:113:3983:131:4684:-348.266,0,-285.209	0/1:378:181,197:181:6382:197:7040:-519.872,0,-460.681	0/1:257:132,125:132:4624:125:4480:-326.004,0,-338.962	0/1:271:199,72:199:7080:72:2560:-149.069,0,-555.315	0/1:255:199,56:199:7054:56:1993:-102.88,0,-557.385	0/1:241:167,74:167:5898:74:2634:-164.755,0,-458.38	0/1:269:134,135:134:4694:135:4821:-353.067,0,-341.646	0/1:169:126,43:126:4484:43:1535:-87.5683,0,-352.855	0/1:161:85,76:85:3001:76:2723:-196.847,0,-221.857	0/1:636:461,175:461:16318:175:6275:-373.387,0,-1276.84	0/1:683:458,225:458:16192:225:8019:-516.123,0,-1251.14	0/1:203:67,136:67:2393:136:4855:-375.987,0,-154.516	0/1:438:190,248:190:6740:248:8844:-664.094,0,-474.821	0/1:430:330,100:330:11630:100:3579:-192.857,0,-917.135	0/1:328:184,144:184:6556:144:5161:-365.889,0,-491.381	0/1:945:399,546:399:14187:546:19557:-1475.16,0,-992.122	0/1:770:327,443:327:11541:443:15796:-1189.54,0,-806.775	0/1:155:89,66:89:3128:66:2364:-166.359,0,-235.086	0/1:644:276,368:276:9782:368:13178:-991.957,0,-686.469	0/1:406:194,212:194:6918:212:7589:-560.824,0,-500.468	0/1:423:301,122:301:10619:122:4339:-263.349,0,-828.294	0/1:28:11,17:11:373:17:603:-46.1707,0,-25.4664	0/1:39:26,13:26:913:13:464:-30.3573,0,-70.7438	0/1:41:10,31:10:345:31:1112:-88.0491,0,-19.0386	0/1:47:31,16:31:1095:16:568:-37.3035,0,-84.7107	0/1:42:18,24:18:648:24:856:-64.7097,0,-46.0086	0/1:901:424,476:424:14987:476:17041:-1262.04,0,-1077.28	0/1:421:166,255:166:5922:255:9141:-695.82,0,-406.354	0/1:241:187,54:187:6591:54:1917:-100.257,0,-520.728	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:469:206,263:206:7253:263:9390:-703.88,0,-511.639	0/1:122:64,58:64:2257:58:2072:-150.02,0,-166.666	0/1:547:218,329:218:7746:329:11800:-897.19,0,-532.51	0/1:447:240,207:240:8461:207:7396:-531.123,0,-626.941	0/1:267:202,64:202:7104:64:2281:-125.109,0,-558.99	0/1:369:159,210:159:5586:210:7516:-565.383,0,-391.784	0/1:385:304,81:304:10745:81:2912:-146.418,0,-851.06	0/1:516:242,274:242:8578:274:9776:-724.425,0,-616.689	0/1:259:107,152:107:3750:152:5426:-410.501,0,-259.734	0/1:508:248,260:248:8771:260:9269:-681.253,0,-636.459	0/1:487:242,245:242:8603:245:8768:-642.491,0,-627.664	0/1:54:22,32:22:777:32:1152:-87.7345,0,-53.9947	0/1:415:185,230:185:6590:230:8272:-619.549,0,-468.256	0/1:201:107,94:107:3816:94:3372:-243.118,0,-283.129	0/1:47:32,15:32:1107:15:540:-34.7881,0,-85.7847	0/1:518:371,147:371:13070:147:5211:-313.195,0,-1020.18	0/1:196:100,96:100:3482:96:3428:-249.73,0,-254.589	0/1:40:26,14:26:894:14:504:-33.6569,0,-68.7279	0/1:73:51,22:51:1800:22:788:-49.2696,0,-140.304	0/1:374:174,199:174:6087:199:7096:-526.203,0,-435.442	0/1:405:328,77:328:11596:77:2758:-126.544,0,-921.603	0/1:35:13,22:13:468:22:792:-61.0692,0,-31.9236	0/1:367:168,198:168:5929:198:7111:-528.653,0,-423.185	0/1:689:500,189:500:17724:189:6755:-400.609,0,-1387.37	0/1:306:167,139:167:5851:139:4968:-355.152,0,-434.589	0/1:291:135,156:135:4754:156:5553:-412.292,0,-340.415	0/1:627:483,144:483:17122:144:5104:-270.756,0,-1351.88	0/1:537:215,322:215:7585:322:11497:-871.589,0,-521.036	0/1:143:68,75:68:2408:75:2641:-194.887,0,-173.928	0/1:240:108,132:108:3791:132:4732:-353.791,0,-269.136	0/1:328:248,80:248:8776:80:2849:-157.901,0,-691.098	0/1:98:56,42:56:1947:42:1512:-106.874,0,-146	0/1:342:162,180:162:5681:180:6441:-476.822,0,-408.457	0/1:296:233,63:233:8254:63:2249:-113.567,0,-653.769	0/1:483:267,216:267:9356:216:7705:-548.086,0,-696.619	0/1:504:221,283:221:7890:283:10138:-760.63,0,-558.409	0/1:364:168,196:168:5913:196:7017:-522.016,0,-422.705	0/1:414:214,200:214:7650:200:7161:-519.918,0,-563.91	0/1:24:12,12:12:413:12:432:-31.9965,0,-30.2731	0/1:364:164,200:164:5792:200:7146:-533.622,0,-411.821	0/1:282:191,91:191:6836:91:3264:-209.081,0,-530.42	0/1:620:341,279:341:12022:279:9925:-706.554,0,-895.203	0/1:336:167,169:167:5901:169:6045:-443.006,0,-430.059	0/1:207:111,96:111:3920:96:3435:-247.047,0,-290.682	0/1:388:316,72:316:11108:72:2563:-114.119,0,-882.83	0/1:601:277,324:277:9784:324:11576:-860.791,0,-699.597	0/1:172:139,33:139:4914:33:1175:-54.2716,0,-390.634	0/1:286:128,157:128:4532:157:5613:-419.287,0,-322.043	0/1:303:137,166:137:4811:166:5926:-442.236,0,-341.935	0/1:122:70,52:70:2490:52:1859:-130.863,0,-187.627	0/1:409:298,111:298:10583:111:3970:-234.364,0,-829.271	0/1:404:330,73:330:11706:73:2603:-112.843,0,-931.741	0/1:344:129,215:129:4541:215:7722:-591.454,0,-305.301	0/1:479:250,228:250:8826:228:8173:-591.479,0,-650.235
chr02	21886989	.	G	A	155107	PASS	AB=0.545298;ABP=291.999;AC=95;AF=0.505319;AN=188;AO=8850;CIGAR=1X;DP=16223;DPB=16223;DPRA=0;EPP=19220.5;EPPR=15989.4;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.993;MQMR=59.9917;NS=94;NUMALT=1;ODDS=97.9325;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=316487;QR=262675;RO=7366;RPL=8850;RPP=19220.5;RPPR=15998.1;RPR=0;RUN=1;SAF=0;SAP=19220.5;SAR=8850;SRF=1;SRP=15989.4;SRR=7365;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:132:48,84:48:1700:84:3008:-231.215,0,-113.55	0/1:195:95,100:95:3373:100:3584:-264.066,0,-245.086	0/1:340:173,167:173:6168:167:5950:-433.259,0,-452.872	0/1:502:225,277:225:8025:277:9934:-742.879,0,-571.156	0/1:96:38,58:38:1344:58:2080:-158.571,0,-92.3613	0/1:42:12,30:12:428:30:1076:-84.5096,0,-26.2155	0/1:140:65,75:65:2340:75:2696:-200.74,0,-168.715	0/1:201:73,128:73:2576:128:4600:-353.655,0,-171.584	0/1:191:86,105:86:3046:105:3776:-282.541,0,-216.871	0/1:180:86,94:86:3072:94:3364:-248.791,0,-222.524	0/1:153:64,89:64:2292:89:3181:-240.455,0,-160.484	0/1:219:103,116:103:3683:116:4145:-307.307,0,-265.747	0/1:122:65,57:65:2328:57:2029:-146.155,0,-173.054	0/1:120:58,62:58:2076:62:2197:-161.871,0,-150.617	0/1:120:61,59:61:2192:59:2112:-153.734,0,-161.422	0/1:135:58,77:58:2068:77:2752:-207.283,0,-145.752	0/1:73:29,44:29:1044:44:1549:-117.725,0,-72.2996	0/1:45:25,20:25:892:20:720:-51.5824,0,-67.0533	0/1:69:37,32:37:1328:32:1152:-83.2191,0,-99.0512	0/1:414:193,221:193:6896:221:7883:-584.874,0,-496.083	0/1:328:127,201:127:4528:201:7194:-548.775,0,-308.952	0/1:127:49,78:49:1756:78:2787:-212.84,0,-120.093	0/1:278:126,152:126:4488:152:5440:-406.043,0,-320.405	0/1:207:70,136:70:2500:136:4850:-374.279,0,-162.881	0/1:227:127,100:127:4525:100:3565:-252.723,0,-339.084	0/1:459:190,269:190:6762:269:9632:-728.658,0,-470.482	0/1:445:206,238:206:7356:238:8525:-633.293,0,-528.173	0/1:68:37,30:37:1328:30:1064:-75.543,0,-99.2934	0/1:349:184,165:184:6562:165:5904:-426.41,0,-485.602	0/1:193:79,114:79:2812:114:4070:-308.389,0,-195.222	0/1:188:82,106:82:2909:106:3757:-281.739,0,-205.452	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:18:13,5:13:460:5:180:-11.1335,0,-36.3168	0/1:23:6,17:6:212:17:612:-48.4897,0,-12.5011	0/1:11:8,2:8:284:2:72:-3.46659,0,-22.5338	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/1:404:185,219:185:6636:219:7845:-584.46,0,-475.701	0/1:140:53,87:53:1876:87:3107:-237.714,0,-126.975	0/1:108:48,60:48:1712:60:2152:-161.436,0,-121.854	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:197:89,108:89:3145:108:3857:-288.022,0,-223.974	0/1:56:27,29:27:960:29:1044:-77.4171,0,-69.8586	0/1:356:149,207:149:5320:207:7408:-559.6,0,-371.769	0/1:103:53,50:53:1900:50:1785:-129.925,0,-140.272	0/1:113:52,61:52:1820:61:2186:-162.99,0,-130.065	0/1:164:70,94:70:2516:94:3364:-253.607,0,-177.323	0/1:221:101,120:101:3604:120:4308:-321.368,0,-258.04	0/1:270:113,157:113:4033:157:5621:-424.731,0,-281.879	0/1:100:46,54:46:1633:54:1932:-144.054,0,-117.154	0/1:190:75,115:75:2688:115:4120:-313.789,0,-184.969	0/1:353:175,178:175:6233:178:6344:-464.788,0,-454.804	0/1:25:6,19:6:216:19:671:-53.1892,0,-12.2648	0/1:215:94,121:94:3348:121:4340:-326.053,0,-236.817	0/1:143:85,58:85:3036:58:2072:-143.703,0,-230.423	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:344:151,193:151:5380:193:6896:-517.155,0,-380.78	0/1:97:51,46:51:1820:46:1648:-119.409,0,-134.881	0/1:11:3,8:3:104:8:284:-22.592,0,-6.39148	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	0/1:215:91,124:91:3244:124:4402:-331.631,0,-227.461	0/1:218:126,92:126:4520:92:3308:-232.313,0,-341.342	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/1:210:95,115:95:3392:115:4113:-307.138,0,-242.28	0/1:354:167,187:167:5996:187:6674:-494.171,0,-433.179	0/1:131:68,63:68:2417:63:2260:-164.228,0,-178.35	0/1:185:77,108:77:2748:108:3872:-292.982,0,-191.872	0/1:324:139,185:139:4956:185:6593:-495.918,0,-348.658	0/1:382:150,232:150:5341:232:8259:-628.329,0,-365.831	0/1:91:44,47:44:1564:47:1678:-123.913,0,-113.658	0/1:148:51,97:51:1794:97:3469:-267.868,0,-117.186	0/1:97:47,50:47:1676:50:1784:-131.643,0,-121.927	0/1:55:29,26:29:1013:26:932:-67.6422,0,-74.9227	0/1:195:98,97:98:3480:97:3480:-254.71,0,-254.713	0/1:139:67,72:67:2396:72:2565:-189.255,0,-174.054	0/1:255:113,142:113:4033:142:5088:-381.301,0,-286.391	0/1:307:124,183:124:4405:183:6567:-498.693,0,-304.208	0/1:200:90,110:90:3189:110:3929:-293.595,0,-227.028	0/1:170:81,89:81:2889:89:3196:-236.688,0,-209.07	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:163:87,76:87:3092:76:2717:-195.704,0,-229.442	0/1:174:61,113:61:2149:113:4033:-310.778,0,-141.297	0/1:305:154,149:154:5480:149:5336:-388.875,0,-401.834	0/1:118:58,60:58:2084:60:2152:-158.426,0,-152.308	0/1:127:66,61:66:2372:61:2172:-157.515,0,-175.507	0/1:91:52,39:52:1841:39:1396:-98.5454,0,-138.575	0/1:264:115,149:115:4116:149:5342:-401.44,0,-290.782	0/1:66:37,29:37:1332:29:1036:-73.6859,0,-100.314	0/1:122:53,69:53:1904:69:2472:-186.008,0,-134.912	0/1:152:69,83:69:2468:83:2964:-221.237,0,-176.618	0/1:71:37,34:37:1324:34:1208:-87.653,0,-98.089	0/1:238:105,133:105:3772:133:4768:-357.631,0,-268.033	0/1:152:65,87:65:2282:87:3120:-235.27,0,-159.883	0/1:193:90,102:90:3212:102:3637:-269.377,0,-231.146	0/1:211:106,105:106:3781:105:3749:-274.091,0,-276.971
chr02	21999043	.	G	A	16336.6	PASS	AB=0.458997;ABP=159.895;AC=85;AF=0.452128;AN=188;AO=4967;CIGAR=1X;DP=10979;DPB=10979;DPRA=19.4738;EPP=10788.7;EPPR=13055.7;GTI=31;LEN=1;MEANALT=1.01111;MQM=20.7097;MQMR=38.2783;NS=94;NUMALT=1;ODDS=0.98419;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176579;QR=214492;RO=6011;RPL=0;RPP=10788.7;RPPR=13055.7;RPR=4967;RUN=1;SAF=0;SAP=10788.7;SAR=4967;SRF=6011;SRP=13055.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:22,33:22:761:33:1171:-27.4762,0,-44.8486	0/1:124:39,85:39:1378:85:3032:-75.2296,0,-75.4344	0/1:149:115,34:115:4112:34:1212:-0.454838,0,-288.127	0/1:280:199,81:199:7129:81:2873:-77.5243,0,-529.079	0/1:39:17,22:17:612:22:788:-26.9376,0,-40.3007	0/1:38:25,13:25:877:13:468:-5.95084,0,-60.4704	0/1:222:41,181:41:1468:181:6405:-297.673,0,-59.9615	0/1:169:123,46:123:4404:46:1636:-10.9475,0,-306.54	0/1:127:83,44:83:2912:44:1580:-20.2856,0,-199.243	0/1:148:84,64:84:2981:64:2270:-81.7817,0,-212.008	0/1:74:37,37:37:1332:37:1324:-51.9462,0,-90.3689	0/1:135:91,44:91:3218:44:1557:-17.6989,0,-221.707	0/1:108:74,34:74:2631:34:1207:-14.2084,0,-181.684	0/1:58:27,31:27:959:31:1097:-37.0273,0,-63.9055	0/1:81:60,21:60:2148:21:752:-18.7138,0,-159.802	0/1:71:51,20:51:1820:20:707:-14.5584,0,-132.665	0/1:86:34,52:34:1220:52:1855:-41.9562,0,-73.0363	0/1:39:25,14:25:870:14:495:-7.24722,0,-59.2552	0/1:38:18,20:18:644:20:712:-15.6416,0,-40.81	0/1:90:58,32:58:2084:32:1111:-36.0482,0,-153.29	0/1:143:104,39:104:3728:39:1404:-26.4443,0,-272.128	0/1:103:21,82:21:752:82:2896:-147.854,0,-35.2339	0/1:164:86,78:86:3084:78:2781:-109.385,0,-215.13	0/1:103:60,43:60:2144:43:1509:-44.3559,0,-149.492	0/1:136:82,54:82:2906:54:1923:-52.9498,0,-205.32	0/1:438:229,209:229:8193:209:7426:-322.137,0,-580.54	0/1:335:204,131:204:7305:131:4673:-130.395,0,-514.837	0/1:76:53,23:53:1900:23:811:-16.5807,0,-137.35	0/1:358:225,133:225:8042:133:4729:-178.17,0,-592.058	0/1:274:145,129:145:5199:129:4596:-147.695,0,-353.751	0/1:145:95,50:95:3401:50:1777:-57.0828,0,-247.3	0/1:14:9,5:9:324:5:180:-4.93651,0,-23.5639	0/0:7:6,1:6:201:1:36:0,-0.117878,-15.1951	0/1:5:3,2:3:108:2:72:-1.33853,0,-7.58409	0/0:12:12,0:12:432:0:0:0,-3.61236,-35.3831	0/0:5:4,1:4:144:1:36:0,-0.00847779,-10.5141	0/1:199:72,127:72:2576:127:4498:-214.848,0,-165.346	0/1:162:29,133:29:1036:133:4749:-179.76,0,-38.7572	0/1:29:13,16:13:464:16:576:-12.6112,0,-29.3728	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.3876	0/1:169:71,98:71:2524:98:3504:-122.21,0,-161.648	0/1:26:16,10:16:563:10:356:-8.56317,0,-39.7103	0/1:265:173,92:173:6182:92:3291:-83.1811,0,-442.66	0/1:108:70,38:70:2508:38:1356:-43.2243,0,-183.771	0/1:86:58,28:58:2084:28:981:-31.0812,0,-151.341	0/1:138:80,58:80:2872:58:2066:-84.8576,0,-208.037	0/0:122:97,25:97:3439:25:896:0,-3.17503,-246.033	0/1:224:71,153:71:2540:153:5460:-239.543,0,-151.912	0/1:176:71,105:71:2543:105:3714:-159.31,0,-167.06	0/1:157:59,98:59:2111:98:3505:-149.257,0,-133.361	0/1:140:40,100:40:1421:100:3550:-174.106,0,-81.9995	0/1:7:3,3:3:108:3:108:-4.00639,0,-7.53657	0/1:124:57,67:57:2020:67:2360:-50.8486,0,-127.414	0/1:115:77,38:77:2768:38:1364:-47.6915,0,-204.698	0/1:6:4,2:4:144:2:72:-1.0375,0,-10.2046	0/1:160:126,34:126:4501:34:1215:-8.88536,0,-332.103	0/1:78:42,36:42:1508:36:1287:-48.46,0,-104.208	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.4173	0/1:8:2,6:2:72:6:212:-10.615,0,-4.24689	0/1:147:79,68:79:2802:68:2402:-75.1718,0,-192.44	0/1:113:63,50:63:2234:50:1771:-66.5881,0,-158.509	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.8907	0/1:335:168,167:168:6011:167:5958:-262.017,0,-421.079	0/1:126:57,69:57:2033:69:2447:-99.9192,0,-134.259	0/1:96:56,40:56:1989:40:1428:-41.8034,0,-138.397	0/1:154:107,47:107:3783:47:1671:-48.4082,0,-279.5	0/1:249:191,58:191:6790:58:2049:-42.5209,0,-508.401	0/1:84:56,28:56:2016:28:1004:-31.5581,0,-147.787	0/0:53:45,8:45:1620:8:288:0,-1.43246,-122.044	0/1:76:20,56:20:716:56:1975:-52.1239,0,-35.6758	0/1:64:35,29:35:1256:29:1036:-44.269,0,-90.4167	0/1:23:11,12:11:392:12:423:-17.8035,0,-27.3318	0/1:105:47,58:47:1669:58:2046:-45.7064,0,-104.118	0/1:47:36,11:36:1288:11:388:-0.177591,0,-90.8394	0/1:282:225,57:225:8022:57:2002:-16.7557,0,-590.622	0/1:201:98,103:98:3482:103:3650:-145.121,0,-239.908	0/1:171:46,125:46:1648:125:4457:-115.055,0,-82.4177	0/1:130:66,64:66:2341:64:2288:-46.4892,0,-151.508	0/0:24:23,1:23:813:1:36:0,-5.72805,-64.9717	0/1:120:38,82:38:1359:82:2929:-110.11,0,-79.0433	0/1:95:70,25:70:2512:25:883:-5.01908,0,-175.304	0/1:164:53,111:53:1896:111:3958:-172.638,0,-113.695	0/1:95:22,73:22:773:73:2599:-118.029,0,-38.3383	0/1:60:29,31:29:1040:31:1099:-45.121,0,-71.2056	0/1:84:63,21:63:2238:21:744:-18.6024,0,-167.69	0/1:159:68,91:68:2417:91:3228:-135.149,0,-159.408	0/1:20:9,11:9:320:11:396:-8.94612,0,-20.3952	0/1:118:62,56:62:2224:56:1987:-39.1209,0,-145.665	0/1:94:64,30:64:2281:30:1055:-10.7927,0,-157.115	0/1:33:16,17:16:564:17:604:-20.6734,0,-38.3401	0/1:72:39,33:39:1378:33:1171:-36.8554,0,-94.7891	0/1:32:22,10:22:788:10:356:-10.9023,0,-57.6009	0/1:224:109,115:109:3874:115:4074:-161.89,0,-265.393	0/1:168:113,55:113:4048:55:1956:-57.7285,0,-294.991
chr02	21999044	.	A	C	95981.3	PASS	AB=0.537392;ABP=132.274;AC=104;AF=0.553191;AN=188;AO=6037;CIGAR=1X;DP=11031;DPB=11031;DPRA=0;EPP=13112.2;EPPR=10845.2;GTI=29;LEN=1;MEANALT=1.01064;MQM=38.2572;MQMR=20.7078;NS=94;NUMALT=1;ODDS=1.17927;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213815;QR=178890;RO=4993;RPL=6037;RPP=13112.2;RPPR=10819.1;RPR=0;RUN=1;SAF=6037;SAP=13112.2;SAR=0;SRF=3;SRP=10819.1;SRR=4990;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:34,22:34:1220:22:773:-45.6049,0,-28.2776	0/1:123:84,39:84:3008:39:1377:-75.586,0,-74.2866	1/1:152:34,118:34:1201:118:4185:-294.311,-0.526128,0	0/1:279:79,200:79:2823:200:7078:-526.23,0,-74.9846	0/1:40:22,18:22:792:18:633:-41.8749,0,-26.6507	0/1:39:14,25:14:504:25:887:-60.8705,0,-6.99698	0/1:228:186,42:186:6675:42:1488:-59.3434,0,-305.207	0/1:168:46,122:46:1643:122:4288:-298.973,0,-11.2454	0/1:128:43,85:43:1548:85:3027:-207.487,0,-18.9111	0/1:151:66,85:66:2354:85:3015:-214.263,0,-84.0053	0/1:74:37,37:37:1328:37:1324:-89.7942,0,-51.9961	0/1:138:46,92:46:1647:92:3203:-220.296,0,-19.5623	0/1:105:32,73:32:1148:73:2544:-176.419,0,-12.532	0/1:58:31,27:31:1095:27:964:-64.3557,0,-36.5429	0/1:81:22,59:22:792:59:2103:-155.994,0,-19.9947	0/1:72:20,52:20:716:52:1814:-132.159,0,-14.3186	0/1:86:52,34:52:1872:34:1211:-72.4855,0,-41.9681	0/1:39:14,25:14:504:25:884:-60.1745,0,-7.26757	0/1:38:20,18:20:716:18:626:-39.7053,0,-15.6461	0/1:89:32,57:32:1144:57:2048:-150.482,0,-36.8992	0/1:144:40,104:40:1440:104:3700:-269.751,0,-29.3811	0/1:103:82,21:82:2948:21:743:-34.4954,0,-148.537	0/1:165:78,87:78:2800:87:3097:-217.606,0,-109.437	0/1:104:43,61:43:1544:61:2171:-151.615,0,-44.1722	0/1:134:52,82:52:1860:82:2890:-204.689,0,-51.4953	0/1:437:211,226:211:7565:226:8017:-566.129,0,-328.249	0/1:339:132,207:132:4726:207:7384:-520.726,0,-130.703	0/1:77:24,53:24:855:53:1882:-135.848,0,-17.6083	0/1:366:139,227:139:4952:227:8040:-590.841,0,-188.143	0/1:280:133,147:133:4768:147:5193:-352.151,0,-152.363	0/1:149:51,98:51:1828:98:3479:-252.897,0,-57.4876	0/1:14:5,9:5:180:9:320:-23.3044,0,-4.93651	1/1:7:1,6:1:36:6:207:-15.8241,-0.117878,0	0/1:4:2,2:2:72:2:72:-4.96358,0,-1.63956	1/1:12:0,12:0:0:12:432:-35.3831,-3.61236,0	1/1:5:1,4:1:36:4:144:-10.5141,-0.00847784,0	0/1:196:125,71:125:4480:71:2515:-160.262,0,-212.645	0/1:162:133,29:133:4744:29:1036:-38.7572,0,-178.626	0/1:29:16,13:16:576:13:464:-29.3728,0,-12.6112	1/1:1:0,1:0:0:1:32:-3.10273,-0.30103,0	0/1:168:98,70:98:3503:70:2501:-159.936,0,-122.529	0/1:26:10,16:10:360:16:572:-39.7878,0,-8.56452	0/1:272:92,180:92:3308:180:6367:-457.287,0,-81.163	0/1:110:40,70:40:1428:70:2491:-182.334,0,-46.312	0/1:85:29,56:29:1031:56:2000:-144.923,0,-33.6297	0/1:133:56,77:56:2016:77:2746:-199.835,0,-82.1365	1/1:121:25,96:25:896:96:3423:-244.5,-2.874,0	0/1:223:153,70:153:5466:70:2481:-147.101,0,-239.679	0/1:182:108,73:108:3849:73:2596:-170.049,0,-162.78	0/1:154:96,58:96:3452:58:2080:-131.835,0,-146.437	0/1:142:99,43:99:3564:43:1525:-90.3022,0,-171.359	0/1:7:4,3:4:144:3:108:-7.56536,0,-6.95152	0/1:127:69,58:69:2480:58:2045:-128.585,0,-52.7052	0/1:114:38,76:38:1364:76:2682:-198.056,0,-47.9926	0/1:6:2,4:2:72:4:136:-9.79298,0,-1.0375	0/1:158:33,125:33:1184:125:4466:-329.524,0,-7.70224	0/1:78:36,42:36:1284:42:1467:-101.279,0,-48.4902	1/1:8:0,8:0:0:8:279:-24.8249,-2.40824,0	0/1:9:6,3:6:216:3:93:-5.78407,0,-10.3416	0/1:147:68,79:68:2444:79:2792:-192.243,0,-77.0676	0/1:116:51,65:51:1824:65:2308:-163.558,0,-67.6537	1/1:5:0,5:0:0:5:180:-15.8907,-1.50515,0	0/1:335:165,170:165:5928:170:6032:-423.302,0,-258.42	0/1:122:65,57:65:2321:57:2020:-134.857,0,-92.8315	0/1:97:43,54:43:1544:54:1915:-132.648,0,-46.9148	0/1:161:50,111:50:1792:111:3900:-286.87,0,-53.6403	0/1:251:58,193:58:2079:193:6790:-508.453,0,-42.2105	0/1:83:27,56:27:972:56:1988:-145.875,0,-29.9218	1/1:53:8,45:8:284:45:1593:-120.301,-1.44674,0	0/1:76:57,19:57:2052:19:667:-32.0007,0,-53.3336	0/1:66:30,36:30:1067:36:1284:-92.3459,0,-45.8027	0/1:23:12,11:12:424:11:396:-27.6212,0,-17.8612	0/1:106:59,47:59:2124:47:1650:-102.567,0,-47.1758	0/1:47:11,36:11:392:36:1296:-91.2411,0,-0.452341	0/1:280:55,225:55:1976:225:7977:-589.388,0,-14.3214	0/1:199:104,95:104:3740:95:3389:-232.408,0,-148.078	0/1:173:126,47:126:4496:47:1654:-82.527,0,-115.62	0/1:132:66,66:66:2359:66:2315:-149.735,0,-48.2125	1/1:23:1,22:1:36:22:784:-62.6994,-5.42702,0	0/1:117:81,36:81:2912:36:1292:-74.6797,0,-109.454	0/1:96:25,71:25:900:71:2503:-175.215,0,-4.74638	0/1:164:110,54:110:3941:54:1918:-115.779,0,-171.6	0/1:95:73,22:73:2624:22:788:-39.4817,0,-118.236	0/1:56:29,27:29:1044:27:968:-66.1913,0,-42.3254	0/1:83:21,62:21:748:62:2165:-161.929,0,-18.6034	0/1:162:92,70:92:3288:70:2474:-163.359,0,-136.424	0/1:19:11,8:11:396:8:288:-17.9774,0,-9.24715	0/1:122:59,63:59:2099:63:2216:-144.782,0,-41.8728	0/1:95:31,64:31:1107:64:2261:-155.352,0,-11.5953	0/1:33:17,16:17:612:16:558:-37.7517,0,-20.7017	0/1:73:33,40:33:1180:40:1423:-97.9323,0,-36.5763	0/1:33:10,23:10:360:23:804:-59.1537,0,-10.6287	0/1:221:114,107:114:4092:107:3783:-258.597,0,-160.972	0/1:172:55,117:55:1976:117:4096:-299.072,0,-56.6353
chr02	21999050	.	G	A	94552.4	PASS	AB=0.540412;ABP=155.175;AC=103;AF=0.547872;AN=188;AO=5988;CIGAR=1X;DP=10953;DPB=10953;DPRA=0;EPP=13005.8;EPPR=10782.2;GTI=31;LEN=1;MEANALT=1.01064;MQM=38.2567;MQMR=20.7075;NS=94;NUMALT=1;ODDS=1.07462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211094;QR=176989;RO=4964;RPL=5988;RPP=13005.8;RPPR=10782.2;RPR=0;RUN=1;SAF=5988;SAP=13005.8;SAR=0;SRF=0;SRP=10782.2;SRR=4964;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:33,22:33:1156:22:772:-46.2403,0,-27.137	0/1:121:82,39:82:2948:39:1373:-75.9872,0,-72.2943	0/1:150:35,115:35:1248:115:4084:-286.091,0,-1.50317	0/1:280:81,199:81:2912:199:7001:-519.561,0,-78.2645	0/1:39:21,18:21:743:18:640:-42.8337,0,-25.9818	0/1:38:13,25:13:464:25:884:-61.1195,0,-6.21707	0/1:229:185,44:185:6582:44:1548:-64.7063,0,-302.747	0/1:164:45,119:45:1605:119:4147:-289.999,0,-11.0449	0/1:129:43,86:43:1544:86:3037:-208.319,0,-18.3388	0/1:148:65,83:65:2305:83:2936:-208.092,0,-82.7085	0/1:72:35,37:35:1248:37:1320:-90.1088,0,-48.4415	0/1:140:46,94:46:1652:94:3332:-229.758,0,-18.976	0/1:106:34,72:34:1193:72:2551:-176.502,0,-14.7403	0/1:59:32,27:32:1148:27:951:-63.1459,0,-38.1121	0/1:82:22,60:22:784:60:2107:-156.751,0,-19.6392	0/1:73:20,53:20:716:53:1868:-136.364,0,-14.0176	0/1:87:52,35:52:1812:35:1244:-75.0542,0,-41.1004	0/1:38:13,25:13:464:25:900:-61.1294,0,-6.21707	0/1:37:19,18:19:676:18:632:-40.5065,0,-14.5956	0/1:89:32,57:32:1140:57:2016:-148.186,0,-36.872	0/1:141:39,102:39:1392:102:3565:-260.479,0,-27.004	0/1:101:81,20:81:2903:20:701:-31.4109,0,-146.858	0/1:164:78,86:78:2787:86:2993:-209.181,0,-109.662	0/1:101:43,58:43:1529:58:2045:-141.748,0,-44.8575	0/1:133:53,80:53:1874:80:2800:-198.02,0,-52.3765	0/1:440:209,231:209:7448:231:8173:-577.155,0,-321.762	0/1:333:132,201:132:4668:201:7093:-499.629,0,-131.995	0/1:78:24,54:24:847:54:1888:-136.702,0,-17.3336	0/1:361:139,222:139:4931:222:7767:-568.23,0,-188.974	0/1:274:133,140:133:4732:140:4960:-334.843,0,-153.825	0/1:148:50,98:50:1777:98:3445:-251.267,0,-55.6667	0/1:14:5,9:5:180:9:312:-22.7853,0,-4.93651	1/1:7:1,6:1:36:6:212:-16.122,-0.117878,0	0/1:5:2,3:2:72:3:108:-7.58409,0,-1.33853	1/1:12:0,12:0:0:12:424:-34.9789,-3.61236,0	1/1:5:1,4:1:36:4:144:-10.5141,-0.00847784,0	0/1:200:126,74:126:4508:74:2623:-168.395,0,-213.319	0/1:159:132,27:132:4703:27:948:-33.1212,0,-178.762	0/1:28:15,13:15:540:13:464:-29.6739,0,-11.9259	1/1:1:0,1:0:0:1:36:-3.3876,-0.30103,0	0/1:164:96,68:96:3431:68:2412:-154.549,0,-120.734	0/1:27:10,17:10:356:17:604:-42.2781,0,-8.24925	0/1:268:89,179:89:3170:179:6320:-454.729,0,-77.7113	0/1:111:40,71:40:1440:71:2505:-183.029,0,-46.0441	0/1:85:27,58:27:950:58:2064:-150.207,0,-29.7658	0/1:137:58,79:58:2088:79:2775:-200.309,0,-85.3729	1/1:114:24,90:24:845:90:3163:-226.332,-2.19633,0	0/1:221:152,69:152:5426:69:2468:-146.465,0,-238.143	0/1:179:107,72:107:3832:72:2514:-163.859,0,-162.905	0/1:154:96,58:96:3421:58:2064:-130.389,0,-145.986	0/1:143:100,43:100:3575:43:1488:-87.0914,0,-173.507	0/1:7:4,3:4:144:3:100:-6.97112,0,-6.95152	0/1:122:68,54:68:2432:54:1904:-119.245,0,-53.1187	0/1:112:36,76:36:1296:76:2704:-200.562,0,-44.3648	0/1:6:2,4:2:72:4:144:-10.2046,0,-1.0375	0/1:157:33,124:33:1179:124:4361:-322.372,0,-8.87864	0/1:76:35,41:35:1252:41:1433:-99.5238,0,-47.0909	1/1:8:0,8:0:0:8:284:-25.2557,-2.40824,0	0/1:9:6,3:6:216:3:108:-7.05329,0,-10.3416	0/1:143:66,77:66:2368:77:2705:-185.885,0,-73.2487	0/1:114:52,62:52:1868:62:2145:-151.05,0,-70.3612	1/1:5:0,5:0:0:5:172:-15.3049,-1.50515,0	0/1:333:166,167:166:5935:167:5893:-413.244,0,-260.627	0/1:124:67,57:67:2391:57:1982:-131.106,0,-96.6035	0/1:98:43,55:43:1533:55:1941:-134.223,0,-46.3973	0/1:157:48,109:48:1704:109:3846:-284.323,0,-49.5863	0/1:245:58,187:58:2071:187:6604:-493.125,0,-43.9624	0/1:85:28,57:28:1004:57:2017:-148.099,0,-31.2702	1/1:51:8,43:8:284:43:1536:-115.373,-0.844682,0	0/1:75:56,19:56:2008:19:672:-32.6524,0,-52.2809	0/1:66:30,36:30:1044:36:1288:-92.8935,0,-45.2582	0/1:22:12,10:12:424:10:343:-23.5279,0,-18.1623	0/1:107:60,47:60:2124:47:1664:-103.562,0,-47.7499	0/1:48:12,36:12:413:36:1250:-88.0368,0,-1.16091	0/1:280:56,224:56:2004:224:7841:-578.587,0,-15.8186	0/1:199:104,95:104:3732:95:3384:-232.346,0,-148.037	0/1:175:126,49:126:4485:49:1748:-89.3951,0,-115.282	0/1:133:65,68:65:2336:68:2384:-154.802,0,-46.6777	1/1:23:1,22:1:36:22:771:-61.9464,-5.42702,0	0/1:118:80,38:80:2867:38:1364:-80.0387,0,-107.343	0/1:92:24,68:24:860:68:2416:-169.12,0,-4.59896	0/1:161:110,51:110:3936:51:1791:-106.32,0,-171.768	0/1:93:72,21:72:2554:21:748:-36.875,0,-116.455	0/1:58:29,29:29:1023:29:1032:-71.2324,0,-41.543	0/1:84:21,63:21:752:63:2228:-166.209,0,-18.6438	0/1:159:90,69:90:3220:69:2441:-161.455,0,-133.513	0/1:20:11,9:11:388:9:316:-20.1925,0,-8.93706	0/1:121:58,63:58:2044:63:2214:-145.179,0,-40.8337	0/1:96:30,66:30:1076:66:2321:-160.5,0,-10.4014	0/1:34:17,17:17:604:17:600:-41.0317,0,-20.3723	0/1:73:33,40:33:1160:40:1400:-96.4685,0,-36.2996	0/1:31:10,21:10:356:21:727:-52.8682,0,-11.2034	0/1:219:113,106:113:4033:106:3744:-256.508,0,-160.044	0/1:170:54,116:54:1924:116:4107:-300.12,0,-55.1283
chr02	21999056	.	C	A	16303.5	PASS	AB=0.458029;ABP=166.332;AC=86;AF=0.457447;AN=188;AO=4923;CIGAR=1X;DP=10902;DPB=10902;DPRA=18.5915;EPP=10693.2;EPPR=12981.9;GTI=30;LEN=1;MEANALT=1.02222;MQM=20.713;MQMR=38.2652;NS=94;NUMALT=1;ODDS=0.79185;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176126;QR=211382;RO=5977;RPL=1;RPP=10684.5;RPPR=12981.9;RPR=4922;RUN=1;SAF=1;SAP=10684.5;SAR=4922;SRF=5977;SRP=12981.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:21,33:21:738:33:1168:-27.5146,0,-43.2041	0/1:122:38,84:38:1338:84:2984:-74.5411,0,-72.914	0/1:150:115,35:115:4084:35:1251:-1.49182,0,-286.466	0/1:282:201,81:201:7123:81:2912:-78.2872,0,-528.814	0/1:40:18,22:18:614:22:788:-26.6494,0,-40.7114	0/1:36:22,14:22:779:14:495:-7.87972,0,-53.0085	0/1:227:43,184:43:1525:184:6591:-301.571,0,-62.7691	0/1:167:122,45:122:4310:45:1620:-10.2241,0,-300.468	0/1:127:83,44:83:2919:44:1580:-20.2856,0,-199.601	0/1:149:83,66:83:2923:66:2369:-84.7014,0,-206.905	0/1:73:36,37:36:1288:37:1312:-52.2014,0,-86.9859	0/1:134:90,44:90:3181:44:1580:-18.0881,0,-219.341	0/1:105:72,33:72:2551:33:1184:-13.879,0,-176.803	0/1:56:27,29:27:964:29:1031:-33.5908,0,-64.9014	0/1:83:61,22:61:2171:22:792:-19.3927,0,-161.323	0/1:71:51,20:51:1807:20:720:-14.6338,0,-131.503	0/1:86:35,51:35:1243:51:1831:-39.9917,0,-75.247	0/1:39:25,14:25:874:14:500:-7.26305,0,-59.3233	0/1:38:18,20:18:648:20:716:-15.6461,0,-41.0115	0/1:85:55,30:55:1972:30:1076:-35.1842,0,-145.181	0/1:141:103,38:103:3648:38:1356:-25.226,0,-266.869	0/1:96:19,77:19:663:77:2746:-139.716,0,-29.6743	0/1:165:88,77:88:3095:77:2745:-107.017,0,-216.364	0/1:102:59,43:59:2104:43:1544:-44.7742,0,-145.844	0/1:131:79,52:79:2805:52:1834:-51.2639,0,-197.971	0/1:430:225,205:225:7912:205:7359:-318.359,0,-559.707	0/1:332:202,130:202:7186:130:4672:-129.697,0,-506.156	0/1:76:52,24:52:1821:24:847:-17.9235,0,-131.507	0/1:362:224,137:224:7933:137:4893:-184.743,0,-583.453	0/1:275:145,130:145:5118:130:4664:-149.403,0,-347.43	0/1:148:99,49:99:3519:49:1737:-54.2524,0,-257.043	0/1:14:9,5:9:316:5:176:-4.92211,0,-23.0448	0/0:7:6,1:6:208:1:36:0,-0.117878,-15.9181	0/1:5:3,2:3:108:2:72:-1.33853,0,-7.58409	0/0:12:12,0:12:428:0:0:0,-3.61236,-35.181	0/1:4:3,1:3:104:1:36:-0.292552,0,-7.67746	0/1:200:73,127:73:2588:127:4559:-215.67,0,-165.551	0/1:158:27,131:27:968:131:4682:-176.892,0,-34.1208	0/1:28:13,15:13:464:15:528:-11.5546,0,-29.6739	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.3876	0/1:165:69,96:69:2456:96:3448:-120.333,0,-157.545	0/1:26:16,10:16:555:10:360:-8.56452,0,-38.9085	0/1:265:177,88:177:6237:88:3145:-75.9885,0,-448.437	0/1:109:71,38:71:2521:38:1368:-42.9787,0,-184.768	0/1:84:57,27:57:2027:27:968:-29.9405,0,-147.274	0/1:136:79,57:79:2808:57:2052:-83.4537,0,-202.97	0/0:119:95,24:95:3279:24:864:0,-3.61449,-236.643	0/1:220:70,150:70:2460:150:5336:-234.609,0,-146.474	0/1:180:75,105:75:2671:105:3730:-157.884,0,-176.647	0/1:149:56,93:56:2008:93:3324:-142.653,0,-126.951	0/1:145:42,102:42:1500:102:3655:-177.124,0,-87.9222	0/1:7:3,4:3:108:4:144:-6.95152,0,-7.56536	0/1:121:55,66:55:1964:66:2364:-50.4667,0,-123.672	0/1:114:77,37:77:2730:37:1320:-47.0615,0,-202.798	0/1:6:4,2:4:144:2:72:-1.0375,0,-10.2046	0/1:159:125,34:125:4425:34:1224:-9.19335,0,-326.21	0/1:77:41,36:41:1456:36:1288:-48.841,0,-100.643	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.2557	0/1:9:3,6:3:99:6:216:-10.3416,0,-6.32932	0/1:145:78,67:78:2769:67:2383:-74.6877,0,-190.198	0/1:116:64,52:64:2237:52:1868:-69.7333,0,-157.596	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.8907	0/1:329:165,164:165:5881:164:5848:-257.075,0,-411.564	0/1:120:54,66:54:1910:66:2372:-96.99,0,-127.051	0/1:97:56,41:56:1954:41:1476:-43.3352,0,-135.86	0/1:156:110,46:110:3897:46:1636:-46.0994,0,-288.008	0/1:240:182,58:182:6487:58:2080:-45.5922,0,-484.848	0/1:83:57,26:57:2023:26:927:-28.0205,0,-149.258	0/0:52:44,8:44:1536:8:288:0,-1.13143,-115.817	0/1:75:18,57:18:635:57:2043:-53.6251,0,-29.5813	0/1:65:35,30:35:1248:30:1067:-46.054,0,-89.4944	0/1:21:11,10:11:392:10:356:-14.3886,0,-27.9339	0/1:105:46,59:46:1621:59:2097:-47.0712,0,-100.595	0/1:47:36,11:36:1292:11:392:-0.452341,0,-91.0403	0/1:281:225,56:225:7935:56:2004:-15.6944,0,-584.749	0/1:196:96,100:96:3402:100:3584:-140.872,0,-234.96	0/1:172:48,124:48:1692:124:4428:-113.286,0,-86.2707	0/1:131:67,64:67:2362:64:2300:-45.9327,0,-153.806	0/0:24:23,1:23:816:1:36:0,-5.72805,-65.4198	0/1:120:38,82:38:1327:82:2940:-110.314,0,-77.0171	0/1:94:69,25:69:2435:25:887:-5.32786,0,-170.948	0/1:165:54,111:54:1876:111:3988:-173.581,0,-112.077	0/1:95:22,73:22:783:73:2614:-118.227,0,-39.068	0/1:58:27,31:27:956:31:1116:-45.8255,0,-64.7866	0/1:82:63,19:63:2232:19:680:-14.2227,0,-167.245	0/1:161:69,92:69:2430:92:3303:-136.814,0,-159.86	0/1:19:8,11:8:284:11:396:-9.24715,0,-17.7744	0/1:120:64,56:64:2246:56:1989:-38.841,0,-148.202	0/1:94:63,31:63:2214:31:1107:-11.8963,0,-152.607	0/1:33:17,16:17:595:16:572:-18.8971,0,-41.0383	0/1:73:40,33:40:1410:33:1188:-36.5927,0,-97.3087	0/1:31:21,10:21:730:10:345:-11.084,0,-53.1009	0/1:220:108,112:108:3798:112:4008:-157.471,0,-260.712	0/1:167:113,54:113:3989:54:1944:-56.1164,0,-291.765
chr02	22170740	.	C	T	2895.39	PASS	AB=0.524953;ABP=20.1324;AC=148;AF=0.795699;AN=186;AO=6164;CIGAR=1X;DP=7712;DPB=7712;DPRA=0;EPP=13388;EPPR=3357.94;GTI=43;LEN=1;MEANALT=1.03226;MQM=11.1007;MQMR=12.1314;NS=93;NUMALT=1;ODDS=6.20828;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219418;QR=54641;RO=1545;RPL=6164;RPP=13388;RPPR=3357.94;RPR=0;RUN=1;SAF=6164;SAP=13388;SAR=0;SRF=1545;SRP=3357.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:932:-25.7285,-7.82678,0	1/1:118:0,117:0:0:117:4168:-117.324,-35.2205,0	0/1:94:42,52:42:1473:52:1851:-23.1311,0,-16.8155	1/1:142:0,142:0:0:142:5036:-144.68,-42.7463,0	0/1:50:20,30:20:694:30:1068:-14.6278,0,-6.25557	0/1:31:16,15:16:563:15:536:-5.60918,0,-9.31097	0/1:78:33,45:33:1166:45:1599:-20.8455,0,-12.2095	1/1:138:1,137:1:36:137:4873:-136.026,-40.4434,0	1/1:67:0,67:0:0:67:2344:-66.0035,-20.169,0	1/1:96:0,96:0:0:96:3429:-97.0747,-28.8989,0	1/1:60:0,60:0:0:60:2127:-59.1542,-18.0618,0	0/1:55:32,23:32:1104:23:820:-6.20347,0,-17.8539	1/1:57:1,56:1:36:56:2008:-56.3563,-15.9603,0	0/1:61:32,29:32:1120:29:1021:-10.3872,0,-15.9527	0/1:58:32,26:32:1120:26:928:-8.26703,0,-16.8468	0/1:55:28,27:28:946:27:960:-10.2474,0,-13.5913	1/1:84:0,84:0:0:84:2995:-82.8885,-25.2865,0	1/1:57:0,57:0:0:57:2023:-57.8732,-17.1587,0	1/1:19:0,19:0:0:19:670:-18.8019,-5.71957,0	0/1:120:63,57:63:2255:57:2020:-20.3072,0,-31.3934	0/1:100:43,57:43:1531:57:2036:-26.3646,0,-16.2001	1/1:162:0,162:0:0:162:5763:-159.792,-48.7669,0	1/1:51:1,50:1:36:50:1766:-48.241,-14.1541,0	1/1:108:10,98:10:352:98:3483:-86.0046,-21.6104,0	1/1:64:0,64:0:0:64:2288:-63.3901,-19.2659,0	1/1:288:0,288:0:0:288:10255:-286.082,-86.6966,0	1/1:215:0,215:0:0:215:7678:-211.694,-64.7215,0	1/1:21:0,21:0:0:21:748:-20.7824,-6.32163,0	0/1:235:118,117:118:4200:117:4183:-44.5994,0,-56.0609	0/1:147:79,68:79:2796:68:2406:-22.5795,0,-44.1956	0/1:115:49,66:49:1721:66:2345:-30.8061,0,-19.9368	1/1:11:1,10:1:36:10:360:-8.80013,-2.11295,0	1/1:12:0,12:0:0:12:428:-11.8843,-3.61236,0	1/1:10:0,10:0:0:10:360:-9.99851,-3.0103,0	0/1:6:2,4:2:72:4:144:-2.25915,0,-0.470748	1/1:7:1,6:1:36:6:212:-4.84293,-0.908827,0	0/1:151:69,82:69:2434:82:2911:-35.3596,0,-28.598	0/1:191:87,104:87:3082:104:3713:-45.1457,0,-35.9349	1/1:33:0,33:0:0:33:1180:-32.7389,-9.93399,0	.:.:.:.:.:.:.:.	1/1:135:0,135:0:0:135:4836:-135.511,-40.6391,0	1/1:23:0,23:0:0:23:806:-22.8363,-6.92369,0	0/1:104:34,69:34:1208:69:2475:-37.3075,0,-7.46206	0/1:52:29,23:29:1005:23:824:-7.10828,0,-15.5684	1/1:45:12,33:12:423:33:1171:-19.4997,-0.675112,0	1/1:68:0,68:0:0:68:2417:-68.5978,-20.47,0	0/1:123:58,65:58:2046:65:2332:-29.0699,0,-25.109	1/1:152:1,151:1:36:151:5368:-148.027,-44.5582,0	0/1:96:50,46:50:1769:46:1586:-16.5155,0,-24.9268	1/1:110:0,110:0:0:110:3902:-110.023,-33.1133,0	0/1:131:48,83:48:1713:83:2980:-42.2966,0,-14.2342	1/1:2:0,2:0:0:2:72:-2.0876,-0.60206,0	1/1:96:0,96:0:0:96:3428:-96.9055,-28.8989,0	1/1:40:0,40:0:0:40:1428:-39.3893,-12.0412,0	0/1:12:5,7:5:171:7:248:-5.4726,0,-1.79835	0/1:112:46,66:46:1625:66:2364:-31.2037,0,-15.7871	1/1:46:0,46:0:0:46:1623:-45.2178,-13.8474,0	0/1:7:2,5:2:72:5:180:-2.94698,0,-0.169718	0/1:15:9,6:9:324:6:216:-1.52761,0,-5.31129	0/1:48:30,18:30:1072:18:640:-3.36624,0,-17.7516	1/1:92:1,91:1:36:91:3232:-90.6738,-26.4964,0	1/1:4:0,4:0:0:4:144:-4.06533,-1.20412,0	1/1:243:0,243:0:0:243:8683:-247.797,-73.1503,0	0/1:145:74,71:74:2614:71:2531:-26.3837,0,-35.4702	1/1:68:7,61:7:239:61:2188:-52.4102,-12.8127,0	1/1:74:0,74:0:0:74:2647:-72.8251,-22.2762,0	0/1:130:56,74:56:1991:74:2647:-37.8806,0,-21.0983	1/1:69:3,66:3:108:66:2352:-61.9192,-17.4156,0	0/1:24:15,9:15:532:9:320:-1.69234,0,-9.06888	1/1:58:0,58:0:0:58:2057:-57.3342,-17.4597,0	0/1:66:27,39:27:960:39:1391:-20.6462,0,-9.27592	1/1:24:0,24:0:0:24:856:-23.8392,-7.22472,0	1/1:74:0,74:0:0:74:2626:-72.9024,-22.2762,0	0/1:59:30,29:30:1063:29:1036:-11.0225,0,-14.521	1/1:115:0,115:0:0:115:4074:-115.133,-34.6185,0	1/1:149:0,149:0:0:149:5326:-146.892,-44.8535,0	1/1:146:0,146:0:0:146:5162:-144.234,-43.9504,0	1/1:110:2,107:2:72:107:3814:-105.469,-30.7415,0	1/1:11:0,11:0:0:11:392:-10.9856,-3.31133,0	1/1:110:1,109:1:36:109:3908:-106.78,-31.9149,0	0/1:135:71,64:71:2535:64:2263:-22.5562,0,-35.6816	1/1:167:0,167:0:0:167:5951:-164.291,-50.272,0	1/1:71:0,71:0:0:71:2506:-69.5712,-21.3731,0	1/1:50:0,50:0:0:50:1788:-49.5479,-15.0515,0	1/1:88:0,88:0:0:88:3115:-89.6565,-26.4906,0	0/1:126:65,61:65:2309:61:2154:-22.2951,0,-31.7953	0/1:31:16,15:16:567:15:532:-5.51743,0,-9.31467	0/1:62:23,39:23:806:39:1392:-19.8265,0,-6.2403	1/1:60:0,60:0:0:60:2105:-59.091,-18.0618,0	0/1:42:15,27:15:540:27:968:-13.8943,0,-3.65475	0/1:63:35,28:35:1252:28:995:-8.64342,0,-18.6297	0/1:36:20,16:20:708:16:572:-5.09289,0,-10.847	1/1:117:0,117:0:0:117:4164:-115.486,-35.2205,0	1/1:83:0,83:0:0:83:2964:-82.0854,-24.9855,0
chr02	22281000	.	GCC	CCC	85505.8	PASS	AB=0.462827;ABP=37.3969;AC=144;AF=0.765957;AN=188;AO=4082;CIGAR=1X2M;DP=5635;DPB=5635;DPRA=0;EPP=8866.96;EPPR=3318.85;GTI=3;LEN=1;MEANALT=1.2234;MQM=59.9917;MQMR=59.979;NS=94;NUMALT=1;ODDS=0.865762;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146183;QR=53773;RO=1527;RPL=0;RPP=8866.96;RPPR=3318.85;RPR=4082;RUN=1;SAF=4082;SAP=8866.96;SAR=0;SRF=1527;SRP=3318.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:25:0,25:0:0:25:890:-80.4191,-7.52575,0	0/1:134:74,60:74:2575:60:2136:-152.17,0,-191.659	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3503	0/1:23:14,9:14:471:9:320:-22.2187,0,-35.7867	0/1:52:28,20:28:961:20:720:-50.3195,0,-71.9898	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:137:0,136:0:0:136:4856:-436.835,-40.9401,0	0/1:75:40,35:40:1399:35:1252:-90.4078,0,-103.627	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:91:43,47:43:1516:47:1672:-123.315,0,-109.278	0/1:52:28,24:28:999:24:864:-62.429,0,-74.5721	0/1:65:38,27:38:1342:27:964:-67.5099,0,-101.512	1/1:46:0,46:0:0:46:1647:-148.518,-13.8474,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	0/1:84:47,36:47:1674:36:1296:-91.5986,0,-125.602	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:24:0,21:0:0:21:756:-68.0074,-6.32163,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:112:0,112:0:0:112:3988:-359.112,-33.7154,0	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	0/1:114:75,38:75:2624:38:1360:-88.3244,0,-202.033	0/1:77:40,36:40:1407:36:1288:-92.9855,0,-103.688	0/1:50:27,23:27:958:23:828:-59.7926,0,-71.4843	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:10:2,8:2:72:8:284:-22.8926,0,-3.82642	0/1:19:7,12:7:245:12:432:-33.5016,0,-16.671	0/1:108:55,53:55:1929:53:1899:-138.676,0,-141.372	0/1:50:29,21:29:1019:21:748:-52.5938,0,-76.9698	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	0/1:136:61,75:61:2163:75:2672:-199.786,0,-153.996	0/1:59:34,23:34:1201:23:824:-57.0017,0,-90.9151	0/1:48:23,25:23:809:25:896:-66.5109,0,-58.6797	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	0/1:112:62,50:62:2205:50:1792:-127.847,0,-164.999	1/1:90:1,88:1:28:88:3156:-281.469,-24.2669,0	0/1:43:26,16:26:909:16:569:-38.5395,0,-69.1203	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0	0/1:48:33,15:33:1165:15:536:-34.1254,0,-90.706	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	1/1:110:0,109:0:0:109:3924:-352.991,-32.8123,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:18:11,7:11:393:7:252:-17.6104,0,-30.2923	0/1:102:59,43:59:2106:43:1536:-107.828,0,-159.104	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:33:18,15:18:611:15:540:-39.0025,0,-45.3738	0/1:18:14,4:14:502:4:144:-7.89508,0,-40.0987	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	1/1:121:1,120:1:36:120:4308:-384.297,-32.8264,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:103:0,102:0:0:102:3664:-329.411,-30.7051,0	0/1:55:24,31:24:851:31:1104:-83.114,0,-60.353	0/1:52:29,22:29:1009:22:792:-56.0366,0,-75.2331	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:87:36,51:36:1278:51:1832:-138.971,0,-89.1334	1/1:52:1,51:1:36:51:1828:-161.2,-12.0553,0	0/1:86:41,44:41:1452:44:1580:-116.652,0,-105.136	0/1:34:15,19:15:531:19:684:-51.6553,0,-37.8869	0/1:36:24,12:24:812:12:424:-27.6593,0,-62.5523	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:85:0,85:0:0:85:3035:-273.381,-25.5876,0	0/1:47:33,14:33:1168:14:504:-31.5497,0,-91.2783	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:105:0,103:0:0:103:3698:-332.662,-31.0061,0	0/1:65:34,31:34:1180:31:1116:-81.1847,0,-86.9332	0/1:101:47,54:47:1679:54:1926:-143.213,0,-120.993	1/1:40:0,39:0:0:39:1404:-126.299,-11.7402,0	1/1:49:0,49:0:0:49:1748:-157.604,-14.7505,0	0/1:57:31,26:31:1101:26:936:-67.4008,0,-82.2412	1/1:82:0,82:0:0:82:2932:-264.115,-24.6845,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:90:0,90:0:0:90:3236:-291.461,-27.0927,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:82:40,42:40:1423:42:1504:-110.97,0,-103.683	0/1:15:6,8:6:214:8:288:-21.6932,0,-15.034	0/1:65:28,37:28:980:37:1311:-98.7239,0,-68.9447	1/1:65:0,64:0:0:64:2286:-205.641,-19.2659,0	0/1:128:66,61:66:2323:61:2176:-157.516,0,-170.738	0/1:214:109,105:109:3822:105:3751:-273.37,0,-279.761	0/1:54:35,19:35:1231:19:680:-45.2735,0,-94.836	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:52:0,52:0:0:52:1866:-168.219,-15.6536,0
chr02	22296028	.	GCCT	ACCC,CCCT	119617	PASS	AB=0.481618,0.510662;ABP=10.9937,5.6959;AC=143,45;AF=0.760638,0.239362;AN=188;AO=4219,1397;CIGAR=1X2M1X,1X3M;DP=5659;DPB=5659;DPRA=12.1591,1.12585;EPP=8794.77,2924.69;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.92473,2.40426;MQM=59.9813,59.9936;MQMR=0;NS=94;NUMALT=2;ODDS=2.06104;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=146082,49903;QR=0;RO=0;RPL=43,13;RPP=8794.77,2924.69;RPPR=0;RPR=4176,1384;RUN=1,1;SAF=4219,1397;SAP=9164.45,3036.56;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20,0:0:0:20,0:693,0:-62.6912,-6.0206,0,-62.6912,-6.0206,-62.6912	1/1:88:0,88,0:0:0:88,0:3037,0:-273.563,-26.4906,0,-273.563,-26.4906,-273.563	1/2:81:0,43,38:0:0:43,38:1500,1356:-232.895,-110.901,-97.9571,-122.347,0,-110.907	1/1:123:0,122,0:0:0:122,0:4204,0:-378.292,-36.7257,0,-378.292,-36.7257,-378.292	1/2:33:0,16,17:0:0:16,17:548,612:-94.7721,-50.2959,-45.4794,-44.827,0,-39.7095	1/2:18:0,9,9:0:0:9,9:314,324:-52.3297,-26.7966,-24.0873,-25.8874,0,-23.1782	1/2:105:0,50,53:0:0:50,53:1718,1880:-292.743,-153.242,-138.19,-139.567,0,-123.612	1/1:76:0,75,1:0:0:75,1:2618,32:-235.55,-22.5773,0,-232.972,-19.679,-232.671	1/1:38:0,37,0:0:0:37,0:1281,0:-115.24,-11.1381,0,-115.24,-11.1381,-115.24	1/1:53:0,51,0:0:0:51,0:1780,0:-160.18,-15.3525,0,-160.18,-15.3525,-160.18	1/1:29:0,29,0:0:0:29,0:997,0:-90.0383,-8.72987,0,-90.0383,-8.72987,-90.0383	1/2:46:0,26,19:0:0:26,19:890,675:-127.291,-55.0547,-47.2279,-72.2823,0,-66.5627	1/1:35:0,34,0:0:0:34,0:1157,0:-104.069,-10.235,0,-104.069,-10.235,-104.069	1/2:44:0,19,25:0:0:19,25:679,900:-129.156,-73.7953,-68.0757,-55.7194,0,-48.1936	1/2:39:0,17,22:0:0:17,22:592,792:-113.117,-64.983,-59.8655,-48.4871,0,-41.8645	1/2:28:0,11,17:0:0:11,17:391,604:-81.4362,-49.5731,-46.2618,-32.2183,0,-27.1008	1/1:30:0,30,0:0:0:30,0:1028,0:-92.8262,-9.0309,0,-92.8262,-9.0309,-92.8262	1/1:27:0,27,0:0:0:27,0:926,0:-83.6487,-8.12781,0,-83.6487,-8.12781,-83.6487	1/1:28:0,28,0:0:0:28,0:974,0:-87.9714,-8.42884,0,-87.9714,-8.42884,-87.9714	1/2:173:0,87,85:0:0:87,85:3014,3044:-493.196,-248.242,-222.053,-244.947,0,-219.359	1/1:77:0,75,0:0:0:75,0:2600,0:-233.89,-22.5773,0,-233.89,-22.5773,-233.89	1/1:71:0,71,0:0:0:71,0:2436,0:-219.496,-21.3731,0,-219.496,-21.3731,-219.496	1/1:50:0,49,0:0:0:49,0:1674,0:-150.641,-14.7505,0,-150.641,-14.7505,-150.641	1/1:73:0,72,0:0:0:72,0:2507,0:-225.633,-21.6742,0,-225.633,-21.6742,-225.633	1/1:55:0,53,0:0:0:53,0:1854,0:-166.849,-15.9546,0,-166.849,-15.9546,-166.849	1/1:154:0,151,0:0:0:151,0:5197,0:-467.597,-45.4555,0,-467.597,-45.4555,-467.597	1/1:111:0,111,0:0:0:111,0:3896,0:-350.842,-33.4143,0,-350.842,-33.4143,-350.842	1/1:21:0,21,0:0:0:21,0:741,0:-67.0136,-6.32163,0,-67.0136,-6.32163,-67.0136	1/2:190:0,94,94:0:0:94,94:3286,3368:-541.993,-274.679,-246.382,-267.308,0,-239.011	1/2:82:0,47,35:0:0:47,35:1641,1256:-236.284,-102.809,-88.6608,-133.829,0,-123.293	1/2:66:0,26,40:0:0:26,40:898,1428:-189.732,-116.776,-108.949,-73.3057,0,-61.2645	1/1:10:0,10,0:0:0:10,0:350,0:-31.8368,-3.0103,0,-31.8368,-3.0103,-31.8368	1/1:7:0,7,0:0:0:7,0:238,0:-21.7515,-2.10721,0,-21.7515,-2.10721,-21.7515	1/1:2:0,2,0:0:0:2,0:58,0:-5.5083,-0.60206,0,-5.5083,-0.60206,-5.5083	1/2:6:0,2,4:0:0:2,4:72,144:-17.9843,-12.1095,-11.5074,-6.23466,0,-5.03054	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/2:131:0,73,58:0:0:73,58:2538,2069:-375.365,-169.02,-147.045,-206.697,0,-189.238	1/2:119:0,50,69:0:0:50,69:1729,2464:-341.729,-201.239,-186.188,-140.841,0,-120.069	1/1:22:0,22,0:0:0:22,0:776,0:-70.1618,-6.62266,0,-70.1618,-6.62266,-70.1618	1/2:5:0,2,3:0:0:2,3:65,108:-14.4042,-9.17208,-8.57002,-5.57097,0,-4.66788	1/1:97:0,97,0:0:0:97,0:3299,0:-297.136,-29.1999,0,-297.136,-29.1999,-297.136	1/1:25:0,25,0:0:0:25,0:843,0:-76.1778,-7.52575,0,-76.1778,-7.52575,-76.1778	1/2:107:0,64,41:0:0:64,41:2205,1463:-298.428,-119.33,-100.064,-179.156,0,-166.814	1/2:30:0,13,17:0:0:13,17:463,590:-86.0484,-48.3067,-44.3933,-38.0938,0,-32.9763	1/2:48:0,25,22:0:0:25,22:875,776:-134.38,-63.1895,-55.6638,-71.1914,0,-64.5688	1/1:70:0,70,0:0:0:70,0:2442,0:-219.808,-21.0721,0,-219.808,-21.0721,-219.808	1/2:59:0,29,30:0:0:29,30:1011,1076:-170.34,-88.122,-79.3921,-82.5713,0,-73.5404	1/1:133:0,132,0:0:0:132,0:4534,0:-407.961,-39.736,0,-407.961,-39.736,-407.961	1/2:99:0,34,62:0:0:34,62:1180,2228:-277.748,-181.83,-171.595,-95.9768,0,-77.3129	1/1:83:0,82,0:0:0:82,0:2830,0:-254.679,-24.6845,0,-254.679,-24.6845,-254.679	1/2:134:0,64,70:0:0:64,70:2268,2512:-390.022,-205.26,-185.994,-185.118,0,-164.046	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/1:93:0,93,0:0:0:93,0:3243,0:-292.095,-27.9958,0,-292.095,-27.9958,-292.095	1/1:37:0,37,0:0:0:37,0:1277,0:-115.23,-11.1381,0,-115.23,-11.1381,-115.23	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/2:80:0,32,48:0:0:32,48:1101,1708:-228.969,-139.556,-129.923,-89.7617,0,-75.3123	1/1:17:0,16,0:0:0:16,0:529,0:-47.6691,-4.81648,0,-47.6691,-4.81648,-47.6691	1/1:3:0,3,0:0:0:3,0:102,0:-9.51638,-0.90309,0,-9.516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chr02	22319720	.	CCTAC	TCTAT,TCTAC	114977	PASS	AB=0.447268,0.549555;ABP=79.0422,70.1576;AC=141,47;AF=0.75,0.25;AN=188;AO=4654,1745;CIGAR=1X3M1X,1X4M;DP=6416;DPB=6416;DPRA=69.7174,1.2614;EPP=8742.83,3569.76;EPPR=5.18177;GTI=2;LEN=5,1;MEANALT=1.70652,2.16981;MQM=30.5374,59.8138;MQMR=60;NS=94;NUMALT=2;ODDS=2.15842;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=164431,62462;QR=36;RO=1;RPL=163,26;RPP=8742.83,3569.76;RPPR=5.18177;RPR=4491,1719;RUN=1,1;SAF=4654,1745;SAP=10109,3792.23;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27,0:0:0:27,0:940,0:-64.5476,-8.12781,0,-64.5476,-8.12781,-64.5476	1/1:94:0,93,1:0:0:93,1:3241,36:-233.609,-27.9958,0,-230.671,-24.6985,-230.37	1/2:88:0,43,45:0:0:43,45:1536,1620:-226.17,-132.54,-119.596,-93.9463,0,-80.3999	1/1:82:0,81,1:0:0:81,1:2850,36:-208.939,-24.3834,0,-206.001,-21.0862,-205.699	1/2:16:0,5,11:0:0:5,11:180,392:-43.3926,-32.3087,-30.8036,-11.3879,0,-8.07652	1/2:18:0,11,7:0:0:11,7:381,252:-44.7883,-20.9213,-17.61,-24.1938,0,-22.0866	1/2:53:0,28,25:0:0:28,25:987,892:-137.287,-73.0734,-64.6445,-64.5381,0,-57.0124	1/1:97:0,97,0:0:0:97,0:3377,0:-238.484,-29.1999,0,-238.484,-29.1999,-238.484	1/1:30:0,29,0:0:0:29,0:1030,0:-72.5971,-8.72987,0,-72.5971,-8.72987,-72.5971	1/1:82:0,82,0:0:0:82,0:2878,0:-211.339,-24.6845,0,-211.339,-24.6845,-211.339	1/1:96:0,96,0:0:0:96,0:3405,0:-249.69,-28.8989,0,-249.69,-28.8989,-249.69	1/2:79:0,43,36:0:0:43,36:1519,1292:-201.501,-105.747,-92.8024,-96.0772,0,-85.2401	1/1:72:0,72,0:0:0:72,0:2574,0:-184.589,-21.6742,0,-184.589,-21.6742,-184.589	1/2:148:0,57,90:0:0:57,90:2019,3223:-389.832,-262.851,-245.692,-126.948,0,-99.8553	1/2:75:0,34,41:0:0:34,41:1192,1476:-198.385,-120.794,-110.559,-77.9109,0,-65.5687	1/2:55:0,23,32:0:0:23,32:826,1152:-147.42,-94.3572,-87.4335,-53.382,0,-43.7491	1/1:115:0,115,0:0:0:115,0:4099,0:-291.465,-34.6185,0,-291.465,-34.6185,-291.465	1/1:69:0,68,1:0:0:68,1:2430,36:-170.152,-20.47,0,-167.214,-17.1728,-166.913	1/1:44:0,44,0:0:0:44,0:1540,0:-109.306,-13.2453,0,-109.306,-13.2453,-109.306	1/2:186:0,75,110:0:0:75,110:2638,3920:-490.901,-319.574,-296.997,-171.382,0,-138.269	1/1:39:0,39,0:0:0:39,0:1375,0:-100.524,-11.7402,0,-100.524,-11.7402,-100.524	1/1:61:0,61,0:0:0:61,0:2158,0:-164.589,-18.3628,0,-164.589,-18.3628,-164.589	1/1:17:0,17,0:0:0:17,0:604,0:-44.4892,-5.11751,0,-44.4892,-5.11751,-44.4892	1/1:42:0,41,1:0:0:41,1:1435,36:-102.541,-12.3422,0,-99.602,-9.04499,-99.3009	1/1:19:0,19,0:0:0:19,0:677,0:-50.0568,-5.71957,0,-50.0568,-5.71957,-50.0568	1/1:217:0,215,2:0:0:215,2:7577,72:-577.17,-64.7215,0,-571.406,-58.6049,-570.804	1/1:128:0,128,0:0:0:128,0:4515,0:-330.142,-38.5318,0,-330.142,-38.5318,-330.142	1/1:30:0,30,0:0:0:30,0:1059,0:-77.1057,-9.0309,0,-77.1057,-9.0309,-77.1057	1/2:101:0,49,52:0:0:49,52:1746,1848:-268.465,-150.945,-136.194,-117.847,0,-102.193	1/2:114:0,50,64:0:0:50,64:1756,2300:-295.976,-187.995,-172.943,-108.292,0,-89.0265	1/2:61:0,25,35:0:0:25,35:882,1245:-158.56,-101.297,-93.771,-57.3293,0,-46.7932	1/1:5:0,5,0:0:0:5,0:180,0:-13.6827,-1.50515,0,-13.6827,-1.50515,-13.6827	1/1:1:0,1,0:0:0:1,0:27,0:-2.44648,-0.30103,0,-2.44648,-0.30103,-2.44648	1/1:1:0,1,0:0:0:1,0:36,0:-2.55871,-0.30103,0,-2.55871,-0.30103,-2.55871	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:10:0,4,6:0:0:4,6:141,216:-26.9261,-17.9843,-16.7802,-9.25527,0,-7.44909	1/2:146:0,63,82:0:0:63,82:2242,2934:-389.917,-239.255,-220.29,-150.637,0,-125.953	1/2:137:0,51,86:0:0:51,86:1800,3071:-361.612,-250.722,-235.37,-111.195,0,-85.3065	1/1:91:0,91,0:0:0:91,0:3217,0:-229.016,-27.3937,0,-229.016,-27.3937,-229.016	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:95:0,95,0:0:0:95,0:3354,0:-241.328,-28.5979,0,-241.328,-28.5979,-241.328	1/1:39:0,39,0:0:0:39,0:1377,0:-100.91,-11.7402,0,-100.91,-11.7402,-100.91	1/2:48:0,20,28:0:0:20,28:712,1008:-126.565,-82.5782,-76.5576,-44.2984,0,-35.8695	1/2:69:0,30,39:0:0:30,39:1079,1400:-183.852,-114.558,-105.527,-69.6141,0,-57.874	1/2:61:0,26,35:0:0:26,35:886,1256:-161.645,-102.773,-94.9457,-59.1893,0,-48.6533	1/1:57:0,57,0:0:0:57,0:2025,0:-154.311,-17.1587,0,-154.311,-17.1587,-154.311	1/2:64:0,22,42:0:0:22,42:783,1508:-171.128,-123.371,-116.749,-48.0605,0,-35.4173	1/1:90:0,84,4:0:0:84,4:2955,144:-217.207,-25.2865,0,-205.457,-13.5329,-204.253	1/2:77:0,39,38:0:0:39,38:1382,1364:-200.979,-111.622,-99.8814,-89.6817,0,-78.2426	1/1:120:0,120,0:0:0:120,0:4252,0:-312.317,-36.1236,0,-312.317,-36.1236,-312.317	1/2:67:0,31,36:0:0:31,36:1102,1296:-181.623,-106.107,-96.7749,-75.8457,0,-65.0086	1/2:13:0,10,3:0:0:10,3:353,108:-32.0512,-9.17208,-6.16178,-23.2224,0,-22.3194	1/1:68:0,68,0:0:0:68,0:2402,0:-166.681,-20.47,0,-166.681,-20.47,-166.681	1/1:30:0,30,0:0:0:30,0:1054,0:-81.2914,-9.0309,0,-81.2914,-9.0309,-81.2914	1/2:10:1,2,7:1:36:2,7:72,234:-19.498,-15.9815,-18.3201,-0.78632,0,-1.65427	1/2:86:0,37,48:0:0:37,48:1296,1716:-223.183,-140.024,-128.886,-83.2228,0,-68.7734	1/1:14:0,14,0:0:0:14,0:498,0:-36.7209,-4.21442,0,-36.7209,-4.21442,-36.7209	1/2:4:0,2,2:0:0:2,2:71,72:-11.075,-6.23466,-5.6326,-5.17222,0,-4.57016	1/2:21:0,5,16:0:0:5,16:174,568:-58.3501,-46.3626,-44.8574,-12.3003,0,-7.48378	1/2:36:0,17,19:0:0:17,19:604,669:-92.9795,-54.8135,-49.696,-38.4817,0,-32.7621	1/1:157:0,154,1:0:0:154,1:5456,36:-400.603,-46.3586,0,-397.665,-43.418,-397.364	1/1:6:0,6,0:0:0:6,0:216,0:-15.9652,-1.80618,0,-15.9652,-1.80618,-15.9652	1/1:129:0,129,0:0:0:129,0:4532,0:-348.83,-38.8329,0,-348.83,-38.8329,-348.83	1/2:82:0,47,34:0:0:47,34:1679,1201:-207.333,-97.8774,-83.729,-109.501,0,-99.2663	1/2:57:0,27,30:0:0:27,30:950,1080:-146.992,-88.3525,-80.2247,-58.9545,0,-49.9236	1/1:31:0,31,0:0:0:31,0:1107,0:-80.6227,-9.33193,0,-80.6227,-9.33193,-80.6227	1/2:85:0,45,40:0:0:45,40:1607,1436:-221.588,-117.496,-103.95,-104.419,0,-92.3774	1/1:72:0,72,0:0:0:72,0:2546,0:-186.158,-21.6742,0,-186.158,-21.6742,-186.158	1/2:59:0,30,29:0:0:30,29:1077,1044:-154.113,-85.415,-76.3841,-69.0218,0,-60.2919	1/2:45:0,22,23:0:0:22,23:783,828:-117.202,-67.9204,-61.2978,-49.6023,0,-42.6786	1/2:111:0,57,53:0:0:57,53:2006,1900:-288.378,-154.959,-137.8,-133.388,0,-117.433	1/1:17:0,17,0:0:0:17,0:601,0:-42.0456,-5.11751,0,-42.0456,-5.11751,-42.0456	1/1:91:0,91,0:0:0:91,0:3205,0:-227.641,-27.3937,0,-227.641,-27.3937,-227.641	1/2:39:0,23,16:0:0:23,16:806,568:-96.8499,-46.6354,-39.7117,-50.5371,0,-45.7206	1/1:90:0,89,0:0:0:89,0:3131,0:-226.685,-26.7917,0,-226.685,-26.7917,-226.685	1/1:103:0,103,0:0:0:103,0:3642,0:-266.522,-31.0061,0,-266.522,-31.0061,-266.522	1/2:82:0,37,45:0:0:37,45:1284,1612:-212.368,-131.713,-120.575,-80.9679,0,-67.4215	1/2:80:0,46,34:0:0:46,34:1632,1216:-198.465,-99.5115,-85.6642,-99.2753,0,-89.0402	1/1:5:0,5,0:0:0:5,0:173,0:-13.1158,-1.50515,0,-13.1158,-1.50515,-13.1158	1/1:58:0,58,0:0:0:58,0:2030,0:-147.528,-17.4597,0,-147.528,-17.4597,-147.528	1/2:69:0,26,43:0:0:26,43:918,1532:-183,-125.198,-117.371,-58.1103,0,-45.166	1/1:112:0,112,0:0:0:112,0:3951,0:-288.835,-33.7154,0,-288.835,-33.7154,-288.835	1/1:81:0,80,0:0:0:80,0:2863,0:-208.844,-24.0824,0,-208.844,-24.0824,-208.844	1/1:80:0,80,0:0:0:80,0:2818,0:-204.82,-24.0824,0,-204.82,-24.0824,-204.82	1/1:75:0,75,0:0:0:75,0:2663,0:-195.95,-22.5773,0,-195.95,-22.5773,-195.95	1/2:151:0,65,84:0:0:65,84:2322,3012:-397.172,-245.735,-226.168,-151.469,0,-126.183	1/2:37:0,15,22:0:0:15,22:539,788:-97.3003,-64.6221,-60.1067,-32.9873,0,-26.3646	1/2:67:0,34,33:0:0:34,33:1201,1179:-171.185,-96.4832,-86.2482,-75.02,0,-65.086	1/1:69:0,69,0:0:0:69,0:2454,0:-177.187,-20.7711,0,-177.187,-20.7711,-177.187	1/2:75:0,34,41:0:0:34,41:1179,1476:-197.035,-120.664,-110.429,-76.6886,0,-64.3464	1/2:204:0,87,117:0:0:87,117:3042,4182:-534.562,-341.331,-315.141,-193.545,0,-158.325	1/2:62:0,11,51:0:0:11,51:394,1836:-175.542,-150.168,-146.857,-25.6763,0,-10.3238	1/1:42:0,42,0:0:0:42,0:1492,0:-108.136,-12.6433,0,-108.136,-12.6433,-108.136	1/1:76:0,74,2:0:0:74,2:2632,72:-192.155,-22.2762,0,-186.278,-16.0416,-185.676
chr02	22319743	.	GAGTTCT	ATGTTGG,AAGTTCT	101762	PASS	AB=0.445102,0.547995;ABP=82.6424,63.8743;AC=141,47;AF=0.75,0.25;AN=188;AO=4463,1678;CIGAR=2X3M2X,1X6M;DP=6191;DPB=6193.57;DPRA=67.2717,1.14387;EPP=9694.29,3646.74;EPPR=5.18177;GTI=2;LEN=7,1;MEANALT=2.03261,2.37255;MQM=29.562,59.9356;MQMR=60;NS=94;NUMALT=2;ODDS=2.05212;PAIRED=0,0;PAIREDR=0;PAO=10.5,10.5;PQA=315.5,315.5;PQR=0;PRO=0;QA=155232,59740;QR=35;RO=1;RPL=4463,1678;RPP=9694.29,3646.74;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=4463,1678;SAP=9694.29,3646.74;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,26,0:0:0:26,0:906,0:-61.4288,-7.82678,0,-61.4288,-7.82678,-61.4288	1/1:88:0,87,1:0:0:87,1:3041,36:-215.916,-26.1896,0,-212.977,-22.8924,-212.676	1/2:87:0,43,44:0:0:43,44:1531,1576:-222.356,-128.827,-115.883,-93.7871,0,-80.5417	1/1:81:0,80,1:0:0:80,1:2775,36:-204.929,-24.0824,0,-201.99,-20.7852,-201.689	1/2:14:0,5,9:0:0:5,9:174,324:-37.7411,-26.7966,-25.2914,-11.2513,0,-8.54203	1/2:17:0,10,7:0:0:10,7:353,252:-42.5164,-20.9213,-17.911,-21.9195,0,-19.8123	1/2:53:0,28,25:0:0:28,25:972,884:-135.979,-72.2948,-63.866,-63.9492,0,-56.4234	1/1:95:0,94,0:0:0:94,0:3243,0:-229.531,-28.2968,0,-229.531,-28.2968,-229.531	1/1:28:0,28,0:0:0:28,0:977,0:-68.8101,-8.42884,0,-68.8101,-8.42884,-68.8101	1/1:80:0,80,0:0:0:80,0:2789,0:-204.862,-24.0824,0,-204.862,-24.0824,-204.862	1/1:92:0,91,0:0:0:91,0:3151,0:-232.464,-27.3937,0,-232.464,-27.3937,-232.464	1/2:78:0,40,38:0:0:40,38:1380,1339:-196.333,-109.37,-97.3289,-87.2777,0,-75.8386	1/1:66:0,66,0:0:0:66,0:2324,0:-164.777,-19.868,0,-164.777,-19.868,-164.777	1/2:144:0,55,86:0:0:55,86:1902,3050:-370.199,-248.505,-231.948,-121.669,0,-95.7808	1/2:71:0,32,39:0:0:32,39:1101,1387:-184.724,-113.388,-103.755,-71.651,0,-59.9108	1/2:51:0,20,27:0:0:20,27:698,968:-123.528,-78.9717,-72.9511,-44.5407,0,-36.4129	1/1:112:0,110,0:0:0:110,0:3844,0:-275.112,-33.1133,0,-275.112,-33.1133,-275.112	1/1:66:0,65,0:0:0:65,0:2252,0:-159.609,-19.567,0,-159.609,-19.567,-159.609	1/1:42:0,41,0:0:0:41,0:1432,0:-100.482,-12.3422,0,-100.482,-12.3422,-100.482	1/2:178:0,72,104:0:0:72,104:2514,3720:-466.048,-303.394,-281.72,-162.669,0,-131.362	1/1:38:0,38,0:0:0:38,0:1332,0:-97.1524,-11.4391,0,-97.1524,-11.4391,-97.1524	1/1:59:0,57,0:0:0:57,0:1956,0:-150.322,-17.1587,0,-150.322,-17.1587,-150.322	1/1:17:0,17,0:0:0:17,0:600,0:-44.391,-5.11751,0,-44.391,-5.11751,-44.391	1/1:41:0,39,1:0:0:39,1:1373,36:-97.9126,-11.7402,0,-94.9732,-8.73299,-94.6722	1/1:16:0,16,0:0:0:16,0:547,0:-39.7234,-4.81648,0,-39.7234,-4.81648,-39.7234	1/1:214:0,213,0:0:0:213,0:7428,0:-568.9,-64.1194,0,-568.9,-64.1194,-568.9	1/1:121:0,121,0:0:0:121,0:4247,0:-307.98,-36.4246,0,-307.98,-36.4246,-307.98	1/1:28:0,28,0:0:0:28,0:972,0:-70.6845,-8.42884,0,-70.6845,-8.42884,-70.6845	1/2:100:0,49,51:0:0:49,51:1705,1832:-265.568,-149.808,-135.058,-116.086,0,-100.734	1/2:110:0,48,62:0:0:48,62:1649,2217:-283.138,-181.129,-166.679,-102.317,0,-83.6536	1/2:60:0,25,35:0:0:25,35:873,1241:-157.997,-101.042,-93.5158,-57.2129,0,-46.6769	1/1:4:0,4,0:0:0:4,0:142,0:-10.4012,-1.20412,0,-10.4012,-1.20412,-10.4012	1/1:1:0,1,0:0:0:1,0:31,0:-2.62379,-0.30103,0,-2.62379,-0.30103,-2.62379	1/1:1:0,1,0:0:0:1,0:36,0:-2.55871,-0.30103,0,-2.55871,-0.30103,-2.55871	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:9:0,4,5:0:0:4,5:140,180:-23.8969,-15.0469,-13.8428,-9.16558,0,-7.66043	1/2:139:0,61,78:0:0:61,78:2096,2787:-369.609,-227.591,-209.228,-142.339,0,-118.858	1/2:135:0,50,82:0:0:50,82:1733,2920:-345.642,-238.013,-222.962,-107.602,0,-82.9179	1/1:86:0,84,0:0:0:84,0:2920,0:-208.364,-25.2865,0,-208.364,-25.2865,-208.364	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:90:0,89,0:0:0:89,0:3107,0:-224.521,-26.7917,0,-224.521,-26.7917,-224.521	1/1:35:0,35,0:0:0:35,0:1231,0:-88.8694,-10.5361,0,-88.8694,-10.5361,-88.8694	1/2:46:0,20,26:0:0:20,26:696,910:-117.995,-74.2728,-68.2522,-43.9184,0,-36.0916	1/2:68:0,30,37:0:0:30,37:1055,1315:-175.881,-107.221,-98.1904,-68.6866,0,-57.5485	1/2:56:0,23,33:0:0:23,33:775,1168:-146.774,-95.4932,-88.5695,-51.5917,0,-41.6578	1/1:57:0,56,0:0:0:56,0:1951,0:-150.831,-16.8577,0,-150.831,-16.8577,-150.831	1/2:63:0,22,40:0:0:22,40:779,1427:-164.045,-116.326,-109.703,-47.6658,0,-35.6246	1/1:86:0,82,3:0:0:82,3:2864,108:-211.356,-24.6845,0,-202.541,-15.8064,-201.638	1/2:76:0,37,38:0:0:37,38:1299,1364:-194.953,-111.369,-100.231,-83.6529,0,-72.2137	1/1:115:0,113,0:0:0:113,0:3964,0:-291.487,-34.0164,0,-291.487,-34.0164,-291.487	1/2:65:0,30,35:0:0:30,35:1066,1248:-174.91,-102.089,-93.0579,-73.1488,0,-62.6128	1/2:13:0,10,3:0:0:10,3:349,108:-31.8836,-9.17208,-6.16178,-23.0544,0,-22.1513	1/1:67:0,67,0:0:0:67,0:2370,0:-164.526,-20.169,0,-164.526,-20.169,-164.526	1/1:29:0,29,0:0:0:29,0:1014,0:-77.9488,-8.72987,0,-77.9488,-8.72987,-77.9488	1/2:10:0,2,8:0:0:2,8:70,288:-27.66,-23.8592,-23.2571,-4.06954,0,-1.6613	1/2:81:0,35,46:0:0:35,46:1221,1627:-210.446,-132.8,-122.264,-77.9001,0,-64.0527	1/1:14:0,14,0:0:0:14,0:498,0:-36.717,-4.21442,0,-36.717,-4.21442,-36.717	1/2:4:0,2,2:0:0:2,2:69,72:-11.0034,-6.23466,-5.6326,-5.09866,0,-4.4966	1/2:21:0,5,16:0:0:5,16:176,576:-59.4452,-47.3585,-45.8534,-12.4027,0,-7.58625	1/2:35:0,16,19:0:0:16,19:562,659:-89.0397,-53.912,-49.0955,-35.4369,0,-29.7173	1/1:149:0,148,1:0:0:148,1:5091,36:-377.484,-44.5524,0,-374.546,-41.2552,-374.245	1/1:6:0,6,0:0:0:6,0:204,0:-15.6045,-1.80618,0,-15.6045,-1.80618,-15.6045	1/1:128:0,128,0:0:0:128,0:4459,0:-344.201,-38.5318,0,-344.201,-38.5318,-344.201	1/2:80:0,44,34:0:0:44,34:1562,1216:-200.356,-99.2179,-85.9726,-101.173,0,-90.9377	1/2:56:0,28,28:0:0:28,28:963,1008:-143.276,-82.6075,-74.1787,-60.9852,0,-52.5563	1/1:31:0,31,0:0:0:31,0:1073,0:-79.3375,-9.33193,0,-79.3375,-9.33193,-79.3375	1/2:82:0,44,38:0:0:44,38:1532,1341:-209.532,-109.49,-96.245,-100.306,0,-88.8667	1/1:69:0,67,0:0:0:67,0:2341,0:-171.414,-20.169,0,-171.414,-20.169,-171.414	1/2:54:0,28,26:0:0:28,26:996,928:-138.523,-75.8815,-67.4527,-62.9617,0,-55.135	1/2:44:0,21,23:0:0:21,23:719,828:-113.172,-67.9204,-61.5988,-45.5658,0,-38.6421	1/2:107:1,55,51:1:35:55,51:1912,1823:-272.752,-145.799,-132.09,-124.381,0,-111.877	1/1:17:0,17,0:0:0:17,0:602,0:-42.1511,-5.11751,0,-42.1511,-5.11751,-42.1511	1/1:88:0,88,0:0:0:88,0:3080,0:-219.453,-26.4906,0,-219.453,-26.4906,-219.453	1/2:37:0,22,15:0:0:22,15:755,540:-90.7178,-44.4211,-37.7984,-46.6191,0,-42.1036	1/1:86:0,86,0:0:0:86,0:2959,0:-215.435,-25.8886,0,-215.435,-25.8886,-215.435	1/1:101:0,101,0:0:0:101,0:3527,0:-259.246,-30.404,0,-259.246,-30.404,-259.246	1/2:77:0,33,42:0:0:33,42:1132,1476:-190.666,-120.195,-110.261,-70.4858,0,-57.8425	1/2:79:0,45,34:0:0:45,34:1548,1216:-194.762,-99.5115,-85.9652,-95.5695,0,-85.3345	1/1:5:0,3,0:0:0:3,0:107,0:-7.17003,-0.90309,0,-7.17003,-0.90309,-7.17003	1/1:56:0,55,0:0:0:55,0:1889,0:-137.611,-16.5567,0,-137.611,-16.5567,-137.611	1/2:67:0,25,42:0:0:25,42:866,1508:-177.924,-123.304,-115.779,-54.8696,0,-42.2263	1/1:108:0,108,0:0:0:108,0:3749,0:-274.262,-32.5112,0,-274.262,-32.5112,-274.262	1/1:77:0,77,0:0:0:77,0:2675,0:-197.253,-23.1793,0,-197.253,-23.1793,-197.253	1/1:77:0,75,0:0:0:75,0:2596,0:-190.607,-22.5773,0,-190.607,-22.5773,-190.607	1/1:71:0,70,0:0:0:70,0:2433,0:-179.273,-21.0721,0,-179.273,-21.0721,-179.273	1/2:146:0,62,84:0:0:62,84:2171,2972:-383.823,-242.427,-223.763,-141.711,0,-116.424	1/2:36:0,15,21:0:0:15,21:526,727:-91.9163,-59.4278,-54.9124,-32.7927,0,-26.471	1/2:66:0,33,33:0:0:33,33:1122,1169:-166.257,-95.5813,-85.6473,-70.9882,0,-61.0542	1/1:65:0,63,0:0:0:63,0:2190,0:-157.504,-18.9649,0,-157.504,-18.9649,-157.504	1/2:71:0,32,39:0:0:32,39:1108,1377:-184.097,-112.486,-102.853,-71.9249,0,-60.1848	1/2:193:0,82,111:0:0:82,111:2804,3960:-500.796,-323.119,-298.434,-177.927,0,-144.513	1/2:63:0,11,51:0:0:11,51:368,1816:-172.709,-148.156,-144.844,-24.632,0,-9.27952	1/1:42:0,42,0:0:0:42,0:1451,0:-106.912,-12.6433,0,-106.912,-12.6433,-106.912	1/1:75:0,72,2:0:0:72,2:2467,72:-183.636,-21.6742,0,-177.759,-15.753,-177.157
chr02	22319816	.	C	T	33013.9	PASS	AB=0.484841;ABP=11.3712;AC=44;AF=0.236559;AN=186;AO=2041;CIGAR=1X;DP=8899;DPB=8899;DPRA=1.15787;EPP=4434.99;EPPR=14884.1;GTI=0;LEN=1;MEANALT=1.01923;MQM=59.2847;MQMR=59.8459;NS=93;NUMALT=1;ODDS=6.02629;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72094;QR=243864;RO=6857;RPL=0;RPP=4434.99;RPPR=14884.1;RPR=2041;RUN=1;SAF=0;SAP=4434.99;SAR=2041;SRF=0;SRP=14892.8;SRR=6857;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1595:0:0:0,-13.5463,-143.836	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.866	0/1:198:105,92:105:3720:92:3247:-232.74,0,-275.002	0/0:233:233,0:233:8281:0:0:0,-70.14,-745.225	0/1:63:40,23:40:1387:23:814:-54.6086,0,-106.156	0/1:57:21,36:21:737:36:1276:-97.9671,0,-49.4919	0/1:146:74,72:74:2651:72:2547:-185.416,0,-194.885	0/0:141:141,0:141:5064:0:0:0,-42.4452,-455.9	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.761	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:67:66,1:66:2310:1:36:0,-16.5707,-203.783	0/1:70:41,29:41:1446:29:1016:-70.6347,0,-109.356	0/0:71:71,0:71:2515:0:0:0,-21.3731,-226.603	0/1:87:49,38:49:1724:38:1360:-96.503,0,-129.251	0/1:86:36,50:36:1279:50:1767:-133.412,0,-89.5233	0/1:58:28,30:28:1000:30:1072:-79.1959,0,-72.8556	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.064	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/0:31:31,0:31:1081:0:0:0,-9.33193,-97.5966	0/1:194:90,104:90:3224:104:3686:-273.475,0,-230.866	0/0:116:116,0:116:4141:0:0:0,-34.9195,-372.864	0/0:191:191,0:191:6827:0:0:0,-57.4967,-614.487	0/0:55:55,0:55:1922:0:0:0,-16.5566,-173.223	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.804	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/0:288:288,0:288:10256:0:0:0,-86.6966,-921.71	0/0:220:219,1:219:7801:1:36:0,-62.6283,-698.512	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.169	0/1:242:117,125:117:4155:125:4379:-320.846,0,-300.428	0/1:130:71,59:71:2526:59:2101:-150.201,0,-188.448	0/1:97:39,58:39:1359:58:2044:-155.021,0,-93.4015	0/1:13:9,4:9:320:4:136:-8.66215,0,-25.2243	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:7,3:7:252:3:108:-7.06141,0,-20.0187	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:195:87,108:87:3074:108:3806:-283.766,0,-218.187	0/1:180:85,95:85:3014:95:3300:-242.596,0,-217.304	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:158:157,1:157:5564:1:32:0,-44.3634,-497.653	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/1:148:78,70:78:2768:70:2481:-178.976,0,-204.789	0/1:56:34,22:34:1212:22:788:-54.3871,0,-92.5286	0/1:64:36,28:36:1245:28:967:-68.0533,0,-93.081	0/0:125:125,0:125:4448:0:0:0,-37.6287,-400.476	0/1:131:72,59:72:2540:59:2089:-147.787,0,-189.41	0/0:175:175,0:175:6243:0:0:0,-52.6802,-561.905	0/1:102:51,51:51:1815:51:1769:-128.677,0,-132.608	0/0:89:88,1:88:3138:1:36:0,-23.1934,-278.108	0/1:118:71,47:71:2522:47:1654:-113.614,0,-191.71	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:108:108,0:108:3860:0:0:0,-32.5112,-346.895	0/0:38:38,0:38:1344:0:0:0,-11.4391,-121.249	0/1:23:15,8:15:540:8:275:-18.1598,0,-42.0128	0/1:120:66,54:66:2351:54:1932:-138.028,0,-175.724	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	.:.:.:.:.:.:.:.	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:48:21,27:21:733:27:960:-72.2668,0,-51.8402	0/0:113:113,0:113:4008:0:0:0,-34.0164,-360.908	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:197:197,0:197:7024:0:0:0,-59.3029,-632.148	0/1:257:131,126:131:4699:126:4441:-322.446,0,-344.329	0/1:37:21,16:21:733:16:561:-39.6744,0,-55.1516	0/0:88:88,0:88:3133:0:0:0,-26.4906,-282.195	0/1:173:101,72:101:3624:72:2515:-173.953,0,-273.951	0/0:78:77,1:77:2747:1:36:0,-19.8821,-243.874	0/1:19:8,11:8:284:11:396:-30.2585,0,-20.1838	0/1:69:37,32:37:1328:32:1148:-82.8487,0,-99.0512	0/1:95:40,55:40:1424:55:1959:-147.805,0,-99.8596	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/0:200:198,2:198:7026:2:72:0,-53.3693,-625.57	0/1:43:21,22:21:756:22:792:-58.6513,0,-55.4229	0/0:138:138,0:138:4917:0:0:0,-41.5421,-442.674	0/0:205:204,1:204:7227:1:36:0,-58.1129,-646.889	0/1:90:62,28:62:2224:28:988:-62.1359,0,-173.331	0/1:107:68,39:68:2435:39:1380:-92.2806,0,-187.194	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:125:125,0:125:4476:0:0:0,-37.6287,-403.001	0/1:145:78,67:78:2770:67:2388:-171.515,0,-205.892	0/0:220:220,0:220:7850:0:0:0,-66.2266,-706.525	0/0:85:85,0:85:3020:0:0:0,-25.5875,-271.656	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.133	0/0:74:74,0:74:2592:0:0:0,-22.2762,-233.522	0/1:129:66,63:66:2346:63:2268:-165.465,0,-172.561	0/1:27:8,19:8:280:19:660:-51.5568,0,-17.4115	0/1:88:48,40:48:1701:40:1419:-101.515,0,-126.883	0/0:67:67,0:67:2380:0:0:0,-20.169,-214.457	0/1:55:29,26:29:1036:26:932:-67.633,0,-76.9973	0/1:136:65,71:65:2300:71:2480:-182.061,0,-166.319	0/1:57:18,39:18:640:39:1373:-106.349,0,-40.7706	0/0:135:135,0:135:4822:0:0:0,-40.639,-434.001	0/0:88:86,2:86:3044:2:72:0,-19.6539,-267.346
chr02	22372390	.	T	A	112233	PASS	AB=0.52257;ABP=24.7709;AC=145;AF=0.771277;AN=188;AO=8229;CIGAR=1X;DP=10589;DPB=10589;DPRA=0;EPP=17872.1;EPPR=5108.14;GTI=0;LEN=1;MEANALT=1.06383;MQM=28.3452;MQMR=32.2761;NS=94;NUMALT=1;ODDS=4.81853;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293710;QR=84144;RO=2351;RPL=0;RPP=17872.1;RPPR=5108.14;RPR=8229;RUN=1;SAF=8229;SAP=17872.1;SAR=0;SRF=2351;SRP=5108.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1188:-82.3173,-9.93399,0	1/1:163:0,163:0:0:163:5845:-400.404,-49.0679,0	0/1:100:60,40:60:2152:40:1440:-67.286,0,-122.105	1/1:138:0,138:0:0:138:4897:-336.466,-41.5421,0	0/1:81:41,40:41:1468:40:1440:-73.3823,0,-88.217	0/1:105:51,54:51:1828:54:1944:-101.719,0,-97.2081	0/1:105:60,45:60:2148:45:1614:-79.2277,0,-140.104	1/1:223:0,223:0:0:223:7960:-549.331,-67.1297,0	1/1:90:0,90:0:0:90:3236:-220.866,-27.0927,0	1/1:194:0,192:0:0:192:6833:-471.252,-57.7978,0	1/1:77:0,77:0:0:77:2721:-190.037,-23.1793,0	0/1:76:35,41:35:1260:41:1476:-78.201,0,-66.0302	1/1:79:0,79:0:0:79:2840:-195.114,-23.7814,0	0/1:74:39,35:39:1400:35:1260:-64.0275,0,-84.3312	0/1:77:29,48:29:1044:48:1698:-93.8488,0,-59.7506	0/1:76:32,44:32:1152:44:1572:-87.0839,0,-65.1237	1/1:129:0,129:0:0:129:4629:-318.032,-38.8329,0	1/1:73:0,73:0:0:73:2601:-179.829,-21.9752,0	1/1:58:0,58:0:0:58:2073:-142.916,-17.4597,0	0/1:214:116,98:116:4149:98:3483:-177.577,0,-266.838	1/1:94:0,94:0:0:94:3365:-233.051,-28.2968,0	1/1:353:0,353:0:0:353:12523:-860.494,-106.264,0	1/1:77:3,74:3:108:74:2649:-172.271,-14.3782,0	1/1:127:0,127:0:0:127:4507:-309.597,-38.2308,0	1/1:42:0,42:0:0:42:1512:-103.702,-12.6433,0	1/1:354:2,352:2:72:352:12484:-854.92,-100.207,0	1/1:168:0,168:0:0:168:5975:-411.841,-50.573,0	1/1:51:0,51:0:0:51:1832:-127.027,-15.3525,0	0/1:257:125,132:125:4473:132:4729:-249.509,0,-293.316	0/1:165:81,81:81:2893:81:2859:-147.133,0,-172.357	0/1:141:59,82:59:2120:82:2912:-157.908,0,-124.489	1/1:8:0,8:0:0:8:284:-19.8999,-2.40824,0	1/1:10:0,10:0:0:10:360:-24.8994,-3.0103,0	1/1:8:0,8:0:0:8:273:-19.3222,-2.40824,0	0/1:4:3,1:3:108:1:36:-1.53208,0,-6.53392	0/1:8:5,3:5:180:3:108:-5.25313,0,-10.5687	0/1:210:89,120:89:3187:120:4233:-230.319,0,-202.322	0/1:237:123,114:123:4408:114:4085:-209.54,0,-264.902	1/1:68:0,68:0:0:68:2425:-169.246,-20.47,0	1/1:1:0,1:0:0:1:36:-2.7362,-0.30103,0	1/1:127:0,127:0:0:127:4541:-310.453,-38.2308,0	1/1:54:0,54:0:0:54:1910:-133.736,-16.2556,0	0/1:177:87,90:87:3105:90:3232:-168.934,0,-180.846	0/1:90:41,49:41:1472:49:1749:-93.994,0,-90.5488	0/1:61:22,39:22:792:39:1400:-78.0282,0,-44.9505	1/1:84:0,84:0:0:84:3005:-206.71,-25.2865,0	0/1:186:93,93:93:3348:93:3332:-172.25,0,-177.566	1/1:209:0,209:0:0:209:7426:-510.334,-62.9153,0	0/1:134:58,76:58:2076:76:2713:-144.782,0,-124.762	1/1:194:0,194:0:0:194:6953:-477.104,-58.3998,0	0/1:131:53,78:53:1874:78:2785:-153.523,0,-115.799	0/1:13:5,8:5:172:8:273:-15.4088,0,-10.3818	1/1:129:0,129:0:0:129:4591:-316.246,-38.8329,0	1/1:35:0,35:0:0:35:1252:-86.8557,-10.5361,0	0/1:17:9,8:9:324:8:288:-14.8568,0,-18.0154	0/1:111:43,68:43:1544:68:2411:-132.564,0,-82.744	1/1:27:0,27:0:0:27:972:-65.8555,-8.12781,0	1/1:2:0,2:0:0:2:72:-5.03016,-0.60206,0	0/1:22:9,13:9:305:13:453:-25.0159,0,-19.2844	0/1:87:46,41:46:1633:41:1461:-75.1829,0,-99.1244	1/1:166:1,164:1:36:164:5884:-400.377,-46.7785,0	1/1:11:0,11:0:0:11:396:-27.2007,-3.31133,0	1/1:267:0,266:0:0:266:9492:-653.625,-80.074,0	0/1:357:191,166:191:6828:166:5945:-302.342,0,-436.386	0/1:131:68,63:68:2436:63:2238:-113.926,0,-145.294	1/1:133:0,133:0:0:133:4761:-327.55,-40.037,0	0/1:185:93,92:93:3306:92:3289:-169.604,0,-207.592	1/1:66:1,65:1:36:65:2317:-156.944,-16.6804,0	0/1:25:11,14:11:392:14:489:-26.5757,0,-22.5067	0/1:56:22,34:22:792:34:1224:-67.7556,0,-38.877	0/1:97:40,57:40:1440:57:2052:-111.441,0,-91.0708	1/1:16:0,16:0:0:16:576:-39.5141,-4.81648,0	1/1:42:0,42:0:0:42:1508:-104.406,-12.6433,0	0/1:77:33,44:33:1165:44:1584:-85.1276,0,-60.2931	1/1:128:0,128:0:0:128:4604:-316.858,-38.5318,0	1/1:161:0,161:0:0:161:5743:-395.849,-48.4658,0	0/1:203:119,84:119:4242:84:2986:-144.586,0,-238.885	0/1:156:64,92:64:2300:92:3274:-180.648,0,-115.491	1/1:13:0,13:0:0:13:468:-32.1261,-3.91339,0	1/1:142:0,142:0:0:142:5075:-348.802,-42.7463,0	0/1:166:75,91:75:2692:91:3233:-170.694,0,-135.493	1/1:315:0,315:0:0:315:11235:-771.183,-94.8245,0	1/1:121:0,121:0:0:121:4327:-296.448,-36.4246,0	1/1:80:0,80:0:0:80:2876:-195.09,-24.0824,0	1/1:161:0,161:0:0:161:5768:-397.68,-48.4658,0	0/1:174:66,108:66:2372:108:3850:-212.909,0,-135.737	0/1:60:20,40:20:720:40:1421:-80.6144,0,-32.5364	0/1:72:33,39:33:1180:39:1385:-73.7613,0,-60.0449	1/1:92:0,92:0:0:92:3289:-225.641,-27.6948,0	0/1:48:17,31:17:612:31:1116:-63.7215,0,-32.3193	0/1:85:37,48:37:1324:48:1713:-92.7839,0,-75.4318	0/1:67:41,26:41:1476:26:936:-43.8921,0,-97.5329	1/1:139:0,139:0:0:139:4966:-340.289,-41.8432,0	1/1:139:0,138:0:0:138:4934:-339.604,-41.5421,0
chr02	22372409	.	A	G	112424	PASS	AB=0.519333;ABP=18.9627;AC=144;AF=0.765957;AN=188;AO=8130;CIGAR=1X;DP=10503;DPB=10503;DPRA=0;EPP=17432;EPPR=4981.35;GTI=1;LEN=1;MEANALT=1.04255;MQM=28.3287;MQMR=32.2597;NS=94;NUMALT=1;ODDS=2.22098;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=290035;QR=84997;RO=2368;RPL=8104;RPP=17432;RPPR=4981.35;RPR=26;RUN=1;SAF=8130;SAP=17657.1;SAR=0;SRF=2368;SRP=5145.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1152:-79.8548,-9.63296,0	1/1:159:0,158:0:0:158:5621:-386.627,-47.5627,0	0/1:104:63,41:63:2268:41:1468:-68.4688,0,-129.376	1/1:139:0,139:0:0:139:4971:-340.997,-41.8432,0	0/1:83:43,40:43:1540:40:1425:-72.4897,0,-91.3484	0/1:105:51,53:51:1836:53:1887:-98.7877,0,-97.411	0/1:103:61,42:61:2188:42:1504:-72.5488,0,-142.318	1/1:214:0,214:0:0:214:7592:-523.868,-64.4204,0	1/1:89:0,89:0:0:89:3176:-218.122,-26.7917,0	1/1:191:0,191:0:0:191:6802:-470.071,-57.4967,0	1/1:75:0,75:0:0:75:2683:-186.73,-22.5773,0	0/1:76:36,40:36:1296:40:1427:-75.4034,0,-68.5692	1/1:78:0,78:0:0:78:2738:-189.673,-23.4803,0	0/1:75:39,36:39:1380:36:1292:-66.0596,0,-83.4541	0/1:77:29,48:29:1040:48:1707:-94.6561,0,-59.5699	0/1:77:32,45:32:1148:45:1599:-88.9839,0,-64.6823	1/1:130:0,130:0:0:130:4624:-319.182,-39.1339,0	1/1:73:0,73:0:0:73:2615:-179.582,-21.9752,0	1/1:58:0,58:0:0:58:2071:-143.152,-17.4597,0	0/1:212:115,97:115:4128:97:3445:-175.959,0,-265.47	1/1:91:0,91:0:0:91:3226:-224.985,-27.3937,0	1/1:346:0,346:0:0:346:12367:-848.497,-104.156,0	1/1:77:3,74:3:108:74:2656:-172.768,-14.3782,0	1/1:125:0,125:0:0:125:4449:-306.039,-37.6288,0	1/1:41:0,41:0:0:41:1459:-100.831,-12.3422,0	1/1:352:2,350:2:72:350:12465:-852.547,-99.6049,0	1/1:167:0,167:0:0:167:5959:-409.88,-50.272,0	1/1:50:0,50:0:0:50:1778:-123.516,-15.0515,0	0/1:255:124,131:124:4448:131:4668:-247.093,0,-291.788	0/1:161:82,79:82:2952:79:2823:-144.548,0,-175.746	0/1:140:59,81:59:2124:81:2872:-156.377,0,-124.97	1/1:8:0,8:0:0:8:288:-19.9743,-2.40824,0	1/1:10:0,10:0:0:10:360:-24.8994,-3.0103,0	1/1:8:0,8:0:0:8:288:-19.9743,-2.40824,0	0/1:4:3,1:3:108:1:36:-1.53208,0,-6.53392	0/1:8:5,3:5:180:3:108:-5.25313,0,-10.5687	0/1:207:89,118:89:3195:118:4240:-229.553,0,-203.109	0/1:236:122,114:122:4376:114:4075:-209.93,0,-262.607	1/1:68:0,68:0:0:68:2423:-169.232,-20.47,0	1/1:1:0,1:0:0:1:36:-2.7362,-0.30103,0	1/1:125:0,123:0:0:123:4412:-302.604,-37.0267,0	1/1:53:0,53:0:0:53:1886:-131.33,-15.9546,0	0/1:178:88,90:88:3156:90:3210:-168.187,0,-183.851	0/1:90:41,49:41:1476:49:1751:-94.3667,0,-90.7293	0/1:61:23,38:23:828:38:1364:-75.4153,0,-47.5618	1/1:81:0,81:0:0:81:2900:-199.746,-24.3834,0	0/1:187:94,93:94:3372:93:3318:-172.02,0,-179.54	1/1:205:0,205:0:0:205:7303:-502.245,-61.7112,0	0/1:132:58,74:58:2084:74:2660:-141.176,0,-125.752	1/1:194:0,194:0:0:194:6912:-476.322,-58.3998,0	0/1:131:53,78:53:1904:78:2788:-153.947,0,-117.848	0/1:13:5,8:5:180:8:280:-15.9121,0,-10.7497	1/1:130:0,130:0:0:130:4659:-320.306,-39.1339,0	1/1:34:0,34:0:0:34:1212:-84.3195,-10.235,0	0/1:17:9,8:9:320:8:288:-14.8568,0,-17.9267	0/1:113:45,68:45:1612:68:2427:-133.877,0,-87.5668	1/1:27:0,27:0:0:27:963:-65.699,-8.12781,0	0/1:3:1,2:1:36:2:72:-4.12707,0,-1.91799	0/1:23:9,14:9:324:14:491:-27.4224,0,-20.3703	0/1:89:48,41:48:1724:41:1460:-74.9314,0,-104.229	1/1:166:1,165:1:36:165:5899:-403.469,-46.7834,0	1/1:11:0,11:0:0:11:385:-26.917,-3.31133,0	1/1:264:0,264:0:0:264:9417:-650.501,-79.4719,0	0/1:357:194,163:194:6968:163:5825:-294.553,0,-446.393	0/1:130:67,63:67:2404:63:2252:-115.293,0,-142.934	1/1:132:0,132:0:0:132:4706:-324.915,-39.736,0	0/1:183:94,89:94:3376:89:3192:-162.82,0,-213.132	1/1:65:1,64:1:36:64:2296:-154.384,-16.3793,0	0/1:26:11,15:11:396:15:536:-29.3116,0,-22.2941	0/1:55:21,34:21:752:34:1211:-67.7072,0,-36.9558	0/1:96:39,57:39:1392:57:2039:-111.407,0,-87.8234	1/1:15:0,15:0:0:15:540:-37.0514,-4.51545,0	1/1:41:0,41:0:0:41:1459:-101.322,-12.3422,0	0/1:78:35,43:35:1260:43:1518:-81.5634,0,-65.9541	1/1:123:0,123:0:0:123:4383:-303.903,-37.0267,0	1/1:160:0,160:0:0:160:5736:-396.015,-48.1648,0	0/1:203:119,84:119:4276:84:3003:-145.54,0,-240.517	0/1:158:65,93:65:2336:93:3320:-183.845,0,-117.428	1/1:13:0,13:0:0:13:468:-32.1261,-3.91339,0	1/1:139:0,139:0:0:139:4976:-341.756,-41.8432,0	0/1:164:75,89:75:2692:89:3183:-168.816,0,-136.121	1/1:310:0,310:0:0:310:11030:-759.216,-93.3193,0	1/1:118:0,118:0:0:118:4223:-289.265,-35.5215,0	1/1:78:0,78:0:0:78:2779:-189.603,-23.4803,0	1/1:159:0,159:0:0:159:5672:-391.559,-47.8638,0	0/1:172:66,106:66:2363:106:3790:-209.352,0,-135.953	0/1:60:20,40:20:716:40:1428:-81.1354,0,-32.4483	0/1:75:35,40:35:1260:40:1432:-75.7553,0,-65.2484	1/1:90:0,90:0:0:90:3202:-220.072,-27.0927,0	0/1:47:16,31:16:576:31:1111:-63.4929,0,-29.8711	0/1:83:36,47:36:1292:47:1656:-89.6636,0,-73.9091	0/1:67:41,26:41:1463:26:932:-43.8184,0,-96.8412	1/1:138:0,137:0:0:137:4882:-336.264,-41.2411,0	1/1:136:0,136:0:0:136:4823:-333.167,-40.9401,0
chr02	22577149	.	G	A	21454.2	PASS	AB=0.475945;ABP=17.636;AC=46;AF=0.244681;AN=188;AO=1391;CIGAR=1X;DP=6524;DPB=6524;DPRA=1.00073;EPP=3023.53;EPPR=11144.8;GTI=3;LEN=1;MEANALT=1.02041;MQM=50.6592;MQMR=52.2056;NS=94;NUMALT=1;ODDS=0.799341;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49241;QR=181774;RO=5131;RPL=0;RPP=3023.53;RPPR=11144.8;RPR=1391;RUN=1;SAF=0;SAP=3023.53;SAR=1391;SRF=0;SRP=11144.8;SRR=5131;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5616	0/0:86:86,0:86:3038:0:0:0,-25.8886,-272.821	0/1:89:57,32:57:2016:32:1115:-73.8621,0,-154.229	0/0:187:187,0:187:6675:0:0:0,-56.2926,-597.126	0/1:51:31,20:31:1082:20:697:-47.6981,0,-79.7791	0/1:47:24,23:24:864:23:828:-60.6957,0,-63.7542	0/1:87:63,24:63:2217:24:836:-46.7412,0,-172.883	0/0:115:115,0:115:4081:0:0:0,-34.6184,-365.846	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.085	0/0:91:91,0:91:3219:0:0:0,-27.3937,-289.036	0/0:50:50,0:50:1779:0:0:0,-15.0515,-159.676	0/1:69:34,35:34:1195:35:1203:-87.798,0,-86.8496	0/0:66:66,0:66:2323:0:0:0,-19.868,-208.55	0/1:50:27,23:27:960:23:820:-59.071,0,-69.3855	0/1:65:33,32:33:1168:32:1136:-77.087,0,-85.5794	0/1:46:20,26:20:703:26:919:-69.1788,0,-49.5981	0/0:70:70,0:70:2444:0:0:0,-21.0721,-218.605	0/0:53:53,0:53:1878:0:0:0,-15.9546,-168.335	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.322	0/1:120:69,51:69:2436:51:1820:-121.951,0,-182.83	0/0:105:105,0:105:3726:0:0:0,-31.6081,-333.857	0/0:104:103,1:103:3674:1:36:0,-27.9195,-326.26	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.5998	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.3201	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.3267	0/0:237:236,1:236:8391:1:36:0,-68.6079,-750.304	0/0:163:163,0:163:5769:0:0:0,-49.0679,-516.667	0/0:38:38,0:38:1356:0:0:0,-11.4391,-121.805	0/1:138:93,44:93:3307:44:1563:-92.8579,0,-255.362	0/1:96:53,43:53:1873:43:1512:-107.471,0,-139.427	0/1:64:23,41:23:820:41:1451:-106.961,0,-54.7226	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9711	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.54469	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.61541	0/1:147:71,76:71:2495:76:2693:-186.936,0,-179.721	0/1:147:73,74:73:2512:74:2619:-191.705,0,-181.372	0/0:53:53,0:53:1878:0:0:0,-15.9546,-168.757	0/1:7:6,1:6:194:1:36:-1.49107,0,-15.64	0/0:122:122,0:122:4323:0:0:0,-36.7257,-387.693	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.7382	0/1:60:25,35:25:879:35:1234:-93.3009,0,-61.1824	0/1:46:23,23:23:811:23:816:-56.5695,0,-58.9491	0/1:47:23,24:23:820:24:843:-59.4363,0,-59.5383	0/0:63:63,0:63:2240:0:0:0,-18.9649,-200.982	0/1:100:56,44:56:2012:44:1572:-111.669,0,-150.725	0/0:170:170,0:170:6001:0:0:0,-51.1751,-538.505	0/1:61:35,26:35:1252:26:919:-61.7471,0,-94.3147	0/0:113:113,0:113:4011:0:0:0,-34.0164,-360.389	0/1:114:77,37:77:2733:37:1316:-79.0078,0,-211.235	0/1:8:4,4:4:144:4:140:-10.0789,0,-10.8927	0/0:94:94,0:94:3332:0:0:0,-28.2968,-297.882	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.3675	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:78:52,26:52:1794:26:932:-60.7185,0,-137.919	0/0:14:14,0:14:483:0:0:0,-4.21442,-43.7086	0/1:7:5,2:5:180:2:68:-4.1102,0,-14.4133	0/1:9:4,5:4:144:5:180:-13.0393,0,-10.579	0/1:58:31,27:31:1086:27:955:-68.8051,0,-80.3478	0/0:88:87,1:87:3065:1:36:0,-23.0361,-271.939	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.44859	0/0:153:153,0:153:5434:0:0:0,-46.0576,-486.583	0/1:124:83,41:83:2967:41:1459:-89.2898,0,-229.303	0/1:69:31,38:31:1108:38:1351:-101.119,0,-78.8271	0/0:87:87,0:87:3104:0:0:0,-26.1896,-278.758	0/1:111:52,59:52:1836:59:2115:-149.816,0,-131.733	0/0:61:60,1:60:2138:1:36:0,-14.9083,-188.651	0/1:13:5,8:5:180:8:288:-22.354,0,-12.5971	0/1:43:14,29:14:504:29:1032:-80.2492,0,-32.6425	0/1:61:34,27:34:1180:27:968:-64.8996,0,-87.9525	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.0968	0/0:88:88,0:88:3125:0:0:0,-26.4906,-279.966	0/1:52:27,25:27:960:25:874:-63.3217,0,-70.8598	0/0:91:91,0:91:3208:0:0:0,-27.3937,-287.86	0/0:147:147,0:147:5214:0:0:0,-44.2514,-467.696	0/1:83:31,52:31:1116:52:1824:-139.453,0,-75.5149	0/1:73:34,39:34:1212:39:1377:-100.842,0,-86.7945	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.65969	0/0:91:91,0:91:3224:0:0:0,-27.3937,-288.533	0/1:93:50,43:50:1766:43:1540:-110.897,0,-130.332	0/0:210:210,0:210:7450:0:0:0,-63.2163,-667.787	0/0:87:87,0:87:3087:0:0:0,-26.1896,-276.82	0/0:44:44,0:44:1558:0:0:0,-13.2453,-140.263	0/0:51:50,0:50:1766:0:0:0,-15.0515,-158.441	0/1:146:58,88:58:2046:88:3082:-223.209,0,-140.149	0/1:27:10,17:10:352:17:600:-46.2014,0,-23.775	0/1:60:30,30:30:1058:30:1061:-77.7376,0,-77.0558	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.272	0/1:25:12,13:12:428:13:464:-34.5718,0,-31.2417	0/1:50:20,30:20:716:30:1064:-80.7908,0,-49.4436	0/1:60:16,44:16:572:44:1559:-117.233,0,-33.6593	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.564	0/0:98:98,0:98:3483:0:0:0,-29.5009,-312.472
chr02	22577171	.	A	T	21331.5	PASS	AB=0.469771;ABP=25.8538;AC=46;AF=0.244681;AN=188;AO=1357;CIGAR=1X;DP=6526;DPB=6526;DPRA=0.964225;EPP=2829.35;EPPR=10277.1;GTI=3;LEN=1;MEANALT=1.04167;MQM=50.6573;MQMR=52.1858;NS=94;NUMALT=1;ODDS=1.02445;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47961;QR=185008;RO=5162;RPL=1343;RPP=2829.35;RPPR=10277.1;RPR=14;RUN=1;SAF=0;SAP=2949.7;SAR=1357;SRF=0;SRP=11212.2;SRR=5162;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5579	0/0:85:85,0:85:3041:0:0:0,-25.5875,-273.024	0/1:89:57,32:57:2044:32:1118:-73.6407,0,-156.73	0/0:186:186,0:186:6658:0:0:0,-55.9916,-596.046	0/1:50:31,19:31:1116:19:676:-46.1165,0,-83.1105	0/1:48:26,22:26:927:22:765:-54.7183,0,-69.1108	0/1:87:63,24:63:2260:24:847:-47.6448,0,-176.77	0/0:116:116,0:116:4128:0:0:0,-34.9195,-370.485	0/0:56:56,0:56:2008:0:0:0,-16.8577,-179.603	0/0:91:91,0:91:3227:0:0:0,-27.3937,-289.819	0/0:52:51,0:51:1836:0:0:0,-15.3525,-164.198	0/1:69:34,35:34:1211:35:1248:-91.8538,0,-88.2546	0/0:66:66,0:66:2376:0:0:0,-19.868,-213.273	0/1:48:26,22:26:936:22:777:-55.8009,0,-69.6672	0/1:66:34,32:34:1220:32:1152:-77.7524,0,-89.9405	0/1:46:20,26:20:720:26:901:-67.5548,0,-51.1164	0/0:71:71,0:71:2556:0:0:0,-21.3731,-228.374	0/0:54:54,0:54:1922:0:0:0,-16.2556,-172.573	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.629	0/1:123:69,54:69:2484:54:1917:-129.772,0,-186.216	0/0:105:105,0:105:3772:0:0:0,-31.6081,-337.685	0/0:107:107,0:107:3804:0:0:0,-32.2102,-340.954	0/0:19:18,0:18:644:0:0:0,-5.41854,-57.8331	0/0:22:22,0:22:788:0:0:0,-6.62266,-70.9642	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.2729	0/0:242:241,1:241:8647:1:36:0,-70.1131,-772.475	0/0:165:165,0:165:5902:0:0:0,-49.6699,-528.138	0/0:38:38,0:38:1368:0:0:0,-11.4391,-122.875	0/1:137:95,42:95:3416:42:1496:-87.4491,0,-265.281	0/1:94:54,40:54:1936:40:1432:-100.881,0,-145.667	0/1:61:22,39:22:792:39:1377:-101.405,0,-53.1065	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9711	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.54469	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.61541	0/1:145:70,74:70:2507:74:2632:-182.402,0,-181.275	0/1:141:73,67:73:2609:67:2332:-167.636,0,-191.541	0/0:53:53,0:53:1900:0:0:0,-15.9546,-170.661	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6335	0/0:121:121,0:121:4340:0:0:0,-36.4246,-389.114	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.0942	0/1:60:25,35:25:883:35:1248:-94.5631,0,-61.5381	0/1:45:23,22:23:828:22:769:-53.019,0,-60.7715	0/1:51:24,27:24:837:27:940:-67.0086,0,-59.8501	0/0:65:65,0:65:2332:0:0:0,-19.5669,-208.762	0/1:102:58,44:58:2080:44:1525:-106.832,0,-156.208	0/0:168:168,0:168:6036:0:0:0,-50.573,-540.727	0/1:59:34,25:34:1220:25:900:-60.8306,0,-92.0419	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.177	0/1:108:74,34:74:2652:34:1220:-72.5336,0,-205.843	0/1:8:4,4:4:144:4:144:-10.3734,0,-10.8927	0/0:96:96,0:96:3439:0:0:0,-28.8989,-307.932	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.0772	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:78:51,27:51:1828:27:944:-61.7938,0,-140.624	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.7192	0/1:7:5,2:5:180:2:72:-4.39763,0,-14.4133	0/1:9:4,5:4:144:5:176:-12.9216,0,-10.579	0/1:56:31,25:31:1116:25:892:-63.742,0,-83.6407	0/0:89:88,1:88:3155:1:36:0,-23.3372,-279.904	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.8237	0/0:153:151,0:151:5420:0:0:0,-45.4555,-485.844	0/1:125:83,42:83:2988:42:1474:-90.4544,0,-230.875	0/1:68:31,37:31:1112:37:1301:-96.4908,0,-79.3854	0/0:86:86,0:86:3088:0:0:0,-25.8886,-276.918	0/1:109:53,56:53:1904:56:1955:-136.895,0,-138.224	0/0:62:61,1:61:2196:1:36:0,-15.2094,-193.849	0/1:13:5,8:5:180:8:288:-22.354,0,-12.5971	0/1:42:14,28:14:504:28:972:-75.1459,0,-32.9435	0/1:63:34,29:34:1215:29:1032:-69.9692,0,-90.4838	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4559	0/0:90:90,0:90:3199:0:0:0,-27.0927,-286.738	0/1:52:26,26:26:932:26:905:-66.1092,0,-68.3396	0/0:92:92,0:92:3304:0:0:0,-27.6948,-296.36	0/0:153:153,0:153:5487:0:0:0,-46.0576,-491.796	0/1:78:31,47:31:1116:47:1650:-125.303,0,-76.7102	0/1:70:33,37:33:1180:37:1293:-94.1867,0,-84.8206	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0535	0/0:93:93,0:93:3336:0:0:0,-27.9958,-298.356	0/1:87:49,38:49:1760:38:1352:-95.7908,0,-131.245	0/0:217:217,0:217:7763:0:0:0,-65.3235,-694.818	0/0:90:90,0:90:3236:0:0:0,-27.0927,-289.348	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.016	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.331	0/1:146:59,87:59:2115:87:3104:-224.691,0,-146.322	0/1:26:10,16:10:360:16:576:-44.3482,0,-24.7364	0/1:61:30,31:30:1080:31:1108:-81.6682,0,-78.7193	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.364	0/1:26:12,14:12:432:14:495:-37.0563,0,-31.3017	0/1:49:20,29:20:720:29:1024:-77.02,0,-50.1008	0/1:60:16,44:16:572:44:1572:-118.35,0,-33.662	0/0:44:43,0:43:1540:0:0:0,-12.9443,-138.299	0/0:97:97,0:97:3473:0:0:0,-29.1999,-311.461
chr02	22765636	.	C	T	33308.5	PASS	AB=0.462194;ABP=58.3417;AC=45;AF=0.239362;AN=188;AO=2073;CIGAR=1X;DP=10527;DPB=10527;DPRA=1.10989;EPP=4504.47;EPPR=18354.1;GTI=1;LEN=1;MEANALT=1;MQM=59.0063;MQMR=59.8722;NS=94;NUMALT=1;ODDS=0.877446;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73959;QR=298098;RO=8451;RPL=2073;RPP=4504.47;RPPR=18345.4;RPR=0;RUN=1;SAF=2073;SAP=4504.47;SAR=0;SRF=8450;SRP=18345.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:121:121,0:121:4289:0:0:0,-36.4246,-386.185	0/0:76:76,0:76:2688:0:0:0,-22.8783,-242.093	0/1:159:84,75:84:2996:75:2679:-193.42,0,-221.979	0/0:369:369,0:369:13048:0:0:0,-111.08,-1174.15	0/1:78:47,31:47:1649:31:1093:-75.1969,0,-125.212	0/1:68:36,32:36:1272:32:1137:-82.0607,0,-94.3119	0/1:136:90,46:90:3173:46:1634:-106.376,0,-244.85	0/0:173:173,0:173:6131:0:0:0,-52.0782,-551.342	0/0:191:191,0:191:6762:0:0:0,-57.4967,-607.88	0/0:91:91,0:91:3193:0:0:0,-27.3937,-287.224	0/0:23:23,0:23:796:0:0:0,-6.92369,-71.955	0/1:94:55,39:55:1956:39:1388:-95.6306,0,-148.018	0/0:59:59,0:59:2087:0:0:0,-17.7608,-188.025	0/1:54:19,35:19:665:35:1241:-95.736,0,-43.9172	0/1:89:38,51:38:1334:51:1824:-137.645,0,-93.5666	0/1:51:23,28:23:820:28:985:-73.6081,0,-58.77	0/0:24:24,0:24:816:0:0:0,-7.22472,-73.7482	0/0:24:24,0:24:836:0:0:0,-7.22472,-75.5317	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:165:89,76:89:3137:76:2709:-194.298,0,-232.876	0/0:198:198,0:198:6994:0:0:0,-59.6039,-629.525	0/0:143:143,0:143:5048:0:0:0,-43.0473,-454.469	0/0:267:263,4:263:9256:4:144:0,-67.0614,-819.71	0/0:109:109,0:109:3845:0:0:0,-32.8123,-346.114	0/0:174:172,2:172:6038:2:72:0,-45.5425,-536.359	0/0:362:361,1:361:12705:1:32:0,-105.774,-1140.09	0/0:383:383,0:383:13523:0:0:0,-115.294,-1216.86	0/0:21:20,1:20:711:1:36:0,-2.72335,-60.7174	0/1:342:170,172:170:6006:172:6174:-452.517,0,-437.699	0/1:171:114,57:114:3969:57:2015:-130.099,0,-305.928	0/1:176:110,66:110:3869:66:2372:-160.752,0,-295.426	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:3,5:3:108:5:180:-14.1392,0,-7.66693	0/1:6:1,5:1:36:5:172:-14.0083,0,-1.79209	0/1:178:68,110:68:2426:110:3909:-298.382,0,-165.006	0/1:127:57,70:57:2036:70:2493:-186.217,0,-145.281	0/0:22:22,0:22:771:0:0:0,-6.62266,-69.7103	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:182:182,0:182:6378:0:0:0,-54.7875,-574.013	0/0:22:22,0:22:771:0:0:0,-6.62266,-69.7103	0/1:309:160,149:160:5639:149:5317:-385.589,0,-414.616	0/1:51:14,37:14:500:37:1315:-103.225,0,-29.9836	0/1:44:20,24:20:698:24:851:-63.638,0,-49.8961	0/0:230:230,0:230:8108:0:0:0,-69.2369,-729.73	0/1:153:92,61:92:3241:61:2196:-151.792,0,-245.836	0/0:291:289,2:289:10197:2:72:0,-80.763,-910.534	0/1:127:79,48:79:2791:48:1724:-117.036,0,-213.201	0/0:171:171,0:171:6051:0:0:0,-51.4761,-544.699	0/1:179:115,64:115:4066:64:2281:-151.61,0,-312.16	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:150:150,0:150:5327:0:0:0,-45.1545,-479.554	0/0:118:118,0:118:4175:0:0:0,-35.5215,-375.931	0/1:10:6,4:6:207:4:144:-10.2996,0,-15.9566	0/1:169:86,83:86:3027:83:2940:-212.761,0,-221.787	0/0:129:129,0:129:4524:0:0:0,-38.8329,-407.321	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/1:16:9,7:9:312:7:252:-18.2125,0,-23.5989	0/1:113:66,47:66:2352:47:1679:-117.199,0,-177.923	0/0:62:62,0:62:2187:0:0:0,-18.6639,-197.068	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:72:71,0:71:2510:0:0:0,-21.3731,-225.831	0/1:182:109,73:109:3863:73:2609:-180.212,0,-293.076	0/1:52:18,34:18:631:34:1220:-94.4483,0,-41.4621	0/0:145:144,0:144:5055:0:0:0,-43.3483,-454.758	0/1:158:90,68:90:3136:68:2436:-171.896,0,-234.534	0/0:157:156,1:156:5504:1:36:0,-43.6634,-491.891	0/1:38:20,18:20:716:18:631:-45.6765,0,-53.3286	0/1:51:31,20:31:1077:20:720:-49.758,0,-81.8783	0/1:31:16,15:16:564:15:540:-39.5761,0,-41.7584	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:197:197,0:197:6933:0:0:0,-59.3029,-624.042	0/1:98:50,48:50:1756:48:1709:-124.475,0,-128.773	0/0:205:205,0:205:7178:0:0:0,-61.7111,-644.098	0/0:175:175,0:175:6238:0:0:0,-52.6802,-561.516	0/1:171:105,66:105:3708:66:2360:-160.78,0,-282.435	0/1:104:54,50:54:1924:50:1788:-129.676,0,-142.129	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:195:195,0:195:6885:0:0:0,-58.7008,-619.154	0/1:137:72,65:72:2533:65:2313:-166.904,0,-186.96	0/0:364:362,2:362:12736:2:72:0,-102.738,-1138.79	0/0:45:44,0:44:1538:0:0:0,-13.2453,-138.351	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.173	0/0:41:41,0:41:1438:0:0:0,-12.3422,-129.696	0/1:105:54,51:54:1919:51:1823:-132.651,0,-141.377	0/1:19:8,11:8:271:11:383:-29.0677,0,-18.9999	0/1:57:28,29:28:982:29:1031:-75.919,0,-71.533	0/0:71:71,0:71:2495:0:0:0,-21.3731,-224.8	0/1:31:20,11:20:707:11:396:-26.6499,0,-54.6226	0/1:66:35,31:35:1236:31:1112:-80.5234,0,-91.6763	0/1:62:26,36:26:915:36:1292:-97.9176,0,-64.0017	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:61:61,0:61:2150:0:0:0,-18.3628,-193.767
chr02	22787871	.	A	G	64061.1	PASS	AB=0.509454;ABP=8.75866;AC=44;AF=0.234043;AN=188;AO=3785;CIGAR=1X;DP=15866;DPB=15866;DPRA=1.12431;EPP=8222.03;EPPR=26230.1;GTI=0;LEN=1;MEANALT=1.03774;MQM=59.7173;MQMR=59.9591;NS=94;NUMALT=1;ODDS=0.939816;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134927;QR=427315;RO=12078;RPL=0;RPP=8222.03;RPPR=26230.1;RPR=3785;RUN=1;SAF=3785;SAP=8222.03;SAR=0;SRF=12078;SRP=26230.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1484:0:0:0,-12.6433,-133.855	0/0:255:255,0:255:9032:0:0:0,-76.7626,-812.836	0/1:212:124,88:124:4392:88:3136:-218.637,0,-331.634	0/0:395:395,0:395:13934:0:0:0,-118.907,-1253.85	0/1:145:75,70:75:2649:70:2493:-180.953,0,-195.007	0/1:103:55,48:55:1933:48:1697:-122.008,0,-143.239	0/1:333:165,168:165:5785:168:5998:-439.629,0,-419.672	0/0:234:233,0:233:8239:0:0:0,-70.14,-741.171	0/0:265:265,0:265:9399:0:0:0,-79.7729,-845.833	0/0:203:203,0:203:7172:0:0:0,-61.1091,-645.542	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:93:38,55:38:1360:55:1946:-147.199,0,-94.7046	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.485	0/1:95:25,70:25:892:70:2505:-197.102,0,-52.0018	0/1:86:37,49:37:1316:49:1741:-131.076,0,-92.8532	0/1:65:37,28:37:1308:28:1008:-71.4481,0,-98.4546	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:696:355,341:355:12634:341:12153:-883.394,0,-927.22	0/0:363:363,0:363:12813:0:0:0,-109.274,-1153	0/0:144:143,1:143:5058:1:36:0,-39.75,-451.754	0/0:167:167,0:167:5911:0:0:0,-50.272,-532.102	0/0:271:271,0:271:9545:0:0:0,-81.5791,-859.019	0/0:211:211,0:211:7478:0:0:0,-63.5173,-673.07	0/0:538:537,1:537:19008:1:36:0,-158.356,-1706.71	0/0:370:370,0:370:13091:0:0:0,-111.381,-1178	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:518:257,261:257:9078:261:9368:-687.114,0,-661.077	0/1:148:85,63:85:3028:63:2233:-156.665,0,-228.199	0/1:254:135,119:135:4761:119:4276:-308.546,0,-352.183	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/0:36:36,0:36:1265:0:0:0,-10.8371,-114.149	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/0:20:19,1:19:664:1:36:0,-2.42232,-56.4862	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:227:109,118:109:3888:118:4205:-310.287,0,-281.78	0/1:250:132,118:132:4613:118:4201:-302.98,0,-340.085	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.534	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:273:273,0:273:9641:0:0:0,-82.1812,-867.653	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:329:150,179:150:5294:179:6367:-473.943,0,-377.521	0/1:104:47,57:47:1664:57:2014:-150.198,0,-118.74	0/1:106:53,53:53:1858:53:1892:-138.633,0,-135.587	0/0:276:276,0:276:9758:0:0:0,-83.0843,-878.182	0/1:257:140,117:140:4962:117:4181:-299.076,0,-369.366	0/0:276:273,3:273:9688:3:108:0,-73.0091,-861.808	0/1:190:87,103:87:3081:103:3639:-270.483,0,-220.298	0/0:213:213,0:213:7542:0:0:0,-64.1194,-678.829	0/1:284:136,148:136:4766:148:5300:-391.634,0,-343.611	0/1:11:3,8:3:104:8:288:-22.9561,0,-6.39148	0/0:273:273,0:273:9628:0:0:0,-82.1812,-866.479	0/0:61:59,2:59:2084:2:72:0,-11.5261,-179.974	0/1:16:14,2:14:488:2:72:-2.02024,0,-39.4339	0/1:240:122,117:122:4322:117:4127:-299.251,0,-316.851	0/0:110:110,0:110:3908:0:0:0,-33.1133,-351.916	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/1:37:16,21:16:560:21:752:-56.8681,0,-39.5906	0/1:157:77,80:77:2721:80:2857:-210.065,0,-197.757	0/0:117:117,0:117:4180:0:0:0,-35.2205,-376.383	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:259:258,1:258:9084:1:36:0,-74.3685,-813.943	0/1:328:167,161:167:5930:161:5720:-416.144,0,-435.067	0/1:157:80,77:80:2802:77:2749:-200.347,0,-205.158	0/0:154:154,0:154:5407:0:0:0,-46.3586,-486.765	0/1:360:175,185:175:6209:185:6582:-484.018,0,-450.541	0/0:187:185,2:185:6553:2:72:0,-49.4559,-583.023	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	0/1:178:83,95:83:2920:95:3350:-248.05,0,-209.442	0/1:117:46,71:46:1625:71:2536:-193.255,0,-110.46	0/0:26:26,0:26:908:0:0:0,-7.82678,-82.0353	0/0:219:219,0:219:7806:0:0:0,-65.9256,-702.562	0/1:129:72,57:72:2541:57:2044:-145.377,0,-190.107	0/0:447:447,0:447:15807:0:0:0,-134.56,-1422.34	0/0:263:263,0:263:9305:0:0:0,-79.1709,-837.43	0/1:171:86,85:86:3045:85:3025:-220.788,0,-222.804	0/1:147:76,71:76:2681:71:2548:-185.301,0,-197.284	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:226:226,0:226:7926:0:0:0,-68.0328,-713.384	0/1:223:111,112:111:3898:112:4024:-295.214,0,-283.888	0/0:386:384,1:384:13492:1:36:0,-112.658,-1210.38	0/0:113:113,0:113:4024:0:0:0,-34.0164,-362.351	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.295	0/0:104:104,0:104:3712:0:0:0,-31.3071,-334.282	0/1:211:87,124:87:3113:124:4399:-332.472,0,-216.878	0/1:55:19,36:19:684:36:1283:-99.2155,0,-45.3337	0/1:94:43,51:43:1540:51:1817:-135.495,0,-110.566	0/0:67:67,0:67:2380:0:0:0,-20.169,-214.459	0/1:35:13,22:13:464:22:777:-59.693,0,-31.5615	0/1:66:31,35:31:1093:35:1248:-92.7569,0,-78.8097	0/1:115:37,78:37:1312:78:2792:-216.899,0,-83.7632	0/0:170:170,0:170:6045:0:0:0,-51.1751,-544.157	0/0:124:123,1:123:4365:1:36:0,-33.7294,-389.428
chr02	22820898	.	T	A	51136	PASS	AB=0.494719;ABP=4.27181;AC=46;AF=0.244681;AN=188;AO=2587;CIGAR=1X;DP=10542;DPB=10542;DPRA=1.10615;EPP=4793.61;EPPR=15178.8;GTI=1;LEN=1;MEANALT=1.07692;MQM=38.2157;MQMR=49.406;NS=94;NUMALT=1;ODDS=1.32359;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91734;QR=282457;RO=7946;RPL=1295;RPP=3.01785;RPPR=161.688;RPR=1292;RUN=1;SAF=1394;SAP=36.922;SAR=1193;SRF=4601;SRP=434.117;SRR=3345;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1804:0:0:0,-15.3525,-156.784	0/0:82:82,0:82:2910:0:0:0,-24.6845,-255.329	0/1:185:90,95:90:3203:95:3384:-208.101,0,-224.31	0/0:178:178,0:178:6322:0:0:0,-53.5833,-557.24	0/1:34:19,15:19:672:15:524:-29.2617,0,-49.4482	0/1:49:29,20:29:1032:20:697:-40.8535,0,-76.0539	0/1:130:60,70:60:2144:70:2485:-164.989,0,-151.129	0/0:144:143,0:143:5054:0:0:0,-43.0473,-440.384	0/0:125:124,0:124:4415:0:0:0,-37.3277,-382.278	0/0:75:75,0:75:2676:0:0:0,-22.5772,-235.505	0/0:139:139,0:139:4943:0:0:0,-41.8432,-436.252	0/1:266:126,140:126:4440:140:4988:-320.307,0,-310.229	0/0:201:201,0:201:7102:0:0:0,-60.507,-623.251	0/1:179:93,86:93:3316:86:3064:-185.391,0,-235.186	0/1:146:78,68:78:2769:68:2418:-154.342,0,-202.571	0/1:184:94,90:94:3351:90:3164:-203.99,0,-242.635	0/0:119:119,0:119:4272:0:0:0,-35.8226,-371.065	0/0:91:91,0:91:3268:0:0:0,-27.3937,-287.574	0/0:105:104,1:104:3700:1:36:0,-28.362,-318.64	0/1:131:64,67:64:2258:67:2377:-148.731,0,-160.294	0/0:155:155,0:155:5494:0:0:0,-46.6596,-484.624	0/0:45:45,0:45:1607:0:0:0,-13.5463,-142.277	0/0:96:96,0:96:3424:0:0:0,-28.8989,-301.445	0/0:46:46,0:46:1644:0:0:0,-13.8474,-144.616	0/0:68:68,0:68:2414:0:0:0,-20.47,-212.634	0/0:169:169,0:169:6018:0:0:0,-50.8741,-536.801	0/0:162:160,0:160:5687:0:0:0,-48.1648,-498.325	0/0:73:73,0:73:2581:0:0:0,-21.9752,-227.686	0/1:211:124,87:124:4407:87:3068:-188.403,0,-327.285	0/1:126:65,61:65:2286:61:2146:-136.861,0,-162.838	0/1:116:60,56:60:2148:56:1985:-123.589,0,-154.418	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7221	0/0:9:9,0:9:320:0:0:0,-2.70927,-27.6444	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.25757	0/1:9:8,1:8:284:1:36:-0.869497,0,-22.4811	0/1:14:8,6:8:284:6:212:-14.1787,0,-20.9846	0/1:340:151,189:151:5356:189:6729:-468.187,0,-375.557	0/1:57:29,28:29:1028:28:989:-63.6347,0,-74.4957	0/0:108:108,0:108:3867:0:0:0,-32.5112,-340.463	1/1:1:0,1:0:0:1:36:-2.7362,-0.30103,0	0/0:136:136,0:136:4841:0:0:0,-40.9401,-424.636	0/0:80:80,0:80:2847:0:0:0,-24.0824,-251.581	0/1:136:69,67:69:2460:67:2395:-146.467,0,-174.737	0/1:153:88,65:88:3138:65:2290:-146.783,0,-231.684	0/1:127:61,66:61:2158:66:2301:-149.711,0,-154.165	0/0:84:84,0:84:3011:0:0:0,-25.2865,-268.048	0/1:89:47,41:47:1638:41:1463:-87.0364,0,-119.484	0/0:199:198,1:198:7036:1:36:0,-56.3382,-620.756	0/1:61:30,31:30:1076:31:1104:-72.1002,0,-76.9623	0/0:150:150,0:150:5345:0:0:0,-45.1545,-470.23	0/1:84:52,32:52:1849:32:1129:-67.6161,0,-139.989	0/1:9:5,4:5:176:4:140:-9.15304,0,-13.4757	0/0:110:110,0:110:3944:0:0:0,-33.1133,-342.249	0/0:64:64,0:64:2296:0:0:0,-19.2659,-204.44	0/1:5:3,2:3:108:2:72:-5.29451,0,-8.42579	0/1:145:76,69:76:2689:69:2468:-154.024,0,-191.329	0/0:60:60,0:60:2127:0:0:0,-18.0618,-188.829	0/1:4:1,3:1:36:3:108:-7.83787,0,-2.39415	0/1:14:5,9:5:180:9:320:-22.3775,0,-12.2233	0/1:122:56,66:56:1991:66:2337:-143.336,0,-139.901	0/0:199:199,0:199:7088:0:0:0,-59.905,-628.42	0/0:10:10,0:10:356:0:0:0,-3.0103,-31.381	0/0:133:133,0:133:4720:0:0:0,-40.037,-420.486	0/1:139:71,68:71:2515:68:2394:-156.027,0,-180.355	0/1:97:49,47:49:1752:47:1684:-105.614,0,-125.658	0/0:88:87,1:87:3071:1:36:0,-22.9238,-269.273	0/1:115:65,50:65:2306:50:1768:-106.721,0,-169.786	0/0:43:40,3:40:1408:3:108:0,-3.73245,-116.045	0/1:115:65,50:65:2310:50:1774:-106.781,0,-168.597	0/1:47:18,29:18:636:29:1040:-70.9532,0,-41.937	0/1:94:41,53:41:1455:53:1881:-131.341,0,-101.674	0/0:41:41,0:41:1455:0:0:0,-12.3422,-127.69	0/0:102:102,0:102:3610:0:0:0,-30.7051,-316.299	0/1:134:72,61:72:2534:61:2159:-134.227,0,-182.836	0/0:213:213,0:213:7599:0:0:0,-64.1194,-665.368	0/0:122:122,0:122:4327:0:0:0,-36.7257,-384.91	0/1:100:61,38:61:2184:38:1364:-69.211,0,-157.992	0/1:131:47,84:47:1661:84:2968:-180.272,0,-105.609	0/0:20:20,0:20:711:0:0:0,-6.0206,-62.2105	0/0:87:86,1:86:3033:1:36:0,-23.4534,-264.98	0/1:151:74,77:74:2625:77:2685:-153.34,0,-182.979	0/0:182:182,0:182:6463:0:0:0,-54.7875,-569.77	0/0:134:134,0:134:4743:0:0:0,-40.338,-420.785	0/0:201:201,0:201:7146:0:0:0,-60.507,-635.267	0/0:115:114,1:114:4034:1:36:0,-31.8822,-355.252	0/1:232:118,114:118:4203:114:4019:-256.03,0,-303.369	0/1:64:36,28:36:1272:28:1000:-61.039,0,-92.7082	0/1:136:83,53:83:2967:53:1900:-117.384,0,-219.642	0/0:134:133,0:133:4750:0:0:0,-40.037,-417.123	0/1:154:78,76:78:2804:76:2716:-168.018,0,-201.262	0/1:221:107,114:107:3813:114:4042:-253.427,0,-269.723	0/1:151:51,100:51:1806:100:3551:-248.161,0,-115.613	0/0:130:130,0:130:4609:0:0:0,-39.1339,-405.655	0/0:248:246,2:246:8761:2:72:0,-69.2984,-771.377
chr02	22846350	.	C	T	22637.8	PASS	AB=0.426794;ABP=163.883;AC=45;AF=0.239362;AN=188;AO=1482;CIGAR=1X;DP=7926;DPB=7926;DPRA=0.905197;EPP=3221.13;EPPR=13978.6;GTI=4;LEN=1;MEANALT=1.02083;MQM=60;MQMR=59.9904;NS=94;NUMALT=1;ODDS=2.06775;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52576;QR=228193;RO=6440;RPL=1482;RPP=3221.13;RPPR=13978.6;RPR=0;RUN=1;SAF=1482;SAP=3221.13;SAR=0;SRF=6438;SRP=13969.9;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:67:67,0:67:2333:0:0:0,-20.169,-210.225	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.757	0/1:152:84,68:84:2952:68:2432:-173.379,0,-220.156	0/0:196:193,3:193:6874:3:108:0,-48.9267,-608.654	0/1:41:29,12:29:1031:12:423:-26.0628,0,-80.7604	0/1:57:37,20:37:1324:20:720:-47.9701,0,-102.303	0/1:77:35,42:35:1237:42:1492:-111.395,0,-88.453	0/0:159:159,0:159:5630:0:0:0,-47.8638,-506.825	0/0:147:147,0:147:5225:0:0:0,-44.2514,-470.388	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:84:84,0:84:2975:0:0:0,-25.2865,-267.982	0/1:112:52,60:52:1844:60:2121:-157.442,0,-132.525	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:73:46,27:46:1609:27:956:-64.3805,0,-123.122	0/1:72:37,35:37:1315:35:1235:-89.7792,0,-96.9769	0/1:61:29,32:29:1044:32:1132:-83.8258,0,-75.912	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:91:52,39:52:1864:39:1392:-98.1852,0,-140.646	0/0:217:217,0:217:7678:0:0:0,-65.3235,-691.06	0/0:114:114,0:114:4029:0:0:0,-34.3174,-362.802	0/0:84:84,0:84:2941:0:0:0,-25.2865,-264.924	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.295	0/0:103:103,0:103:3576:0:0:0,-31.0061,-322.047	0/0:206:206,0:206:7342:0:0:0,-62.0122,-660.829	0/0:239:239,0:239:8491:0:0:0,-71.9462,-764.067	0/0:28:28,0:28:983:0:0:0,-8.42884,-88.7825	0/1:139:77,62:77:2714:62:2186:-155.161,0,-202.659	0/1:82:54,28:54:1905:28:996:-65.2704,0,-147.041	0/1:56:33,23:33:1161:23:828:-57.9864,0,-87.9371	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:17:9,8:9:320:8:273:-19.7827,0,-24.0248	0/1:14:11,3:11:392:3:108:-5.86075,0,-31.4056	0/1:182:82,100:82:2898:100:3524:-262.584,0,-206.27	0/1:123:85,38:85:2992:38:1364:-86.034,0,-232.484	0/0:57:57,0:57:2024:0:0:0,-17.1587,-182.433	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:87:87,0:87:3088:0:0:0,-26.1896,-278.147	0/0:31:31,0:31:1085:0:0:0,-9.33193,-97.957	0/1:155:111,44:111:3936:44:1563:-94.3013,0,-307.771	0/1:103:56,47:56:1988:47:1658:-118.5,0,-148.186	0/1:47:24,23:24:841:23:820:-59.9741,0,-61.858	0/0:177:177,0:177:6260:0:0:0,-53.2823,-563.497	0/1:79:49,30:49:1734:30:1078:-73.5518,0,-132.559	0/0:148:148,0:148:5252:0:0:0,-44.5524,-472.817	0/1:62:37,25:37:1298:25:871:-60.0401,0,-98.4558	0/0:119:119,0:119:4216:0:0:0,-35.8226,-379.564	0/1:127:81,46:81:2844:46:1656:-111.098,0,-217.966	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:101:101,0:101:3572:0:0:0,-30.404,-321.686	0/0:74:74,0:74:2621:0:0:0,-22.2762,-236.134	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:91:62,29:62:2167:29:1036:-66.1602,0,-167.899	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:14:7,7:7:248:7:239:-17.6283,0,-18.4498	0/1:93:72,21:72:2564:21:752:-40.0105,0,-203.015	0/0:125:122,3:122:4368:3:108:0,-27.5536,-383.219	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:108:108,0:108:3831:0:0:0,-32.5112,-344.987	0/1:124:82,42:82:2913:42:1508:-98.6869,0,-224.991	0/1:52:23,29:23:797:29:1040:-78.2608,0,-56.3923	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:152:93,59:93:3301:59:2099:-143.423,0,-251.553	0/0:180:179,0:179:6315:0:0:0,-53.8844,-568.089	0/1:41:17,24:17:612:24:856:-65.0189,0,-43.0712	0/1:73:47,26:47:1663:26:928:-61.8631,0,-127.982	0/1:52:26,26:26:919:26:921:-67.5516,0,-67.3726	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:139:139,0:139:4909:0:0:0,-41.8432,-441.962	0/1:100:47,51:47:1679:51:1803:-132.691,0,-121.536	0/0:166:165,0:165:5830:0:0:0,-49.6699,-524.456	0/0:116:116,0:116:4101:0:0:0,-34.9195,-369.276	0/1:62:44,18:44:1553:18:624:-37.8184,0,-121.396	0/1:73:37,36:37:1320:36:1264:-92.0856,0,-97.1268	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:66:39,27:39:1365:27:952:-66.1272,0,-103.278	0/0:124:124,0:124:4381:0:0:0,-37.3277,-394.465	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/0:73:72,1:72:2579:1:36:0,-18.3769,-228.76	0/0:42:42,0:42:1454:0:0:0,-12.6433,-131.15	0/1:177:93,84:93:3302:84:2969:-214.161,0,-244.117	0/1:26:15,11:15:536:11:388:-27.4306,0,-40.748	0/1:55:29,26:29:1024:26:924:-66.921,0,-75.9159	0/0:81:81,0:81:2886:0:0:0,-24.3834,-259.976	0/1:36:23,13:23:820:13:468:-31.6226,0,-63.2854	0/1:125:66,59:66:2307:59:2084:-150.199,0,-170.261	0/1:96:30,66:30:1072:66:2317:-179.892,0,-67.8936	0/0:121:121,0:121:4263:0:0:0,-36.4246,-383.85	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997
chr02	22846423	.	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chr02	22886999	.	A	T	31115.3	PASS	AB=0.501632;ABP=3.09536;AC=44;AF=0.236559;AN=186;AO=1850;CIGAR=1X;DP=7879;DPB=7879;DPRA=0.978704;EPP=4020.23;EPPR=13021.1;GTI=1;LEN=1;MEANALT=1.08163;MQM=59.9978;MQMR=59.9839;NS=93;NUMALT=1;ODDS=0.444089;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66185;QR=213375;RO=6023;RPL=1850;RPP=4020.23;RPPR=13021.1;RPR=0;RUN=1;SAF=1850;SAP=4020.23;SAR=0;SRF=6023;SRP=13081.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:15,1:15:521:1:36:0,-1.2182,-43.6181	0/0:145:145,0:145:5128:0:0:0,-43.6493,-461.662	0/1:94:45,49:45:1582:49:1725:-127.233,0,-114.37	0/0:117:117,0:117:4155:0:0:0,-35.2205,-374.024	0/1:47:22,25:22:777:25:896:-66.8119,0,-56.102	0/1:39:14,25:14:504:25:890:-68.6782,0,-33.9579	0/1:69:30,39:30:1076:39:1396:-105.166,0,-76.3818	0/0:149:149,0:149:5232:0:0:0,-44.8535,-471.014	0/0:139:139,0:139:4920:0:0:0,-41.8432,-442.95	0/0:78:77,1:77:2749:1:36:0,-19.8821,-244.008	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:81:44,37:44:1561:37:1323:-94.9879,0,-116.396	0/0:88:88,0:88:3128:0:0:0,-26.4906,-281.745	0/1:63:26,37:26:908:37:1328:-100.857,0,-63.0676	0/1:83:46,37:46:1633:37:1323:-94.3858,0,-122.271	0/1:63:28,35:28:989:35:1246:-93.4781,0,-70.3571	0/0:70:70,0:70:2482:0:0:0,-21.0721,-223.631	0/0:84:84,0:84:2995:0:0:0,-25.2865,-269.782	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3671	0/1:175:94,81:94:3319:81:2905:-209.004,0,-246.246	0/0:121:121,0:121:4314:0:0:0,-36.4246,-388.434	0/0:95:95,0:95:3352:0:0:0,-28.5978,-301.893	0/0:55:55,0:55:1942:0:0:0,-16.5566,-175.052	0/0:111:111,0:111:3913:0:0:0,-33.4143,-352.359	0/0:54:54,0:54:1910:0:0:0,-16.2556,-172.174	0/0:273:273,0:273:9628:0:0:0,-82.1812,-866.475	0/0:162:162,0:162:5718:0:0:0,-48.7669,-514.736	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/1:224:95,129:95:3367:129:4606:-347.272,0,-235.812	0/1:90:52,37:52:1811:37:1311:-91.1395,0,-136.114	0/1:105:59,46:59:2067:46:1656:-117.72,0,-154.687	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:5:2,3:2:57:3:108:-8.57002,0,-3.90816	0/1:203:103,100:103:3647:100:3570:-260.396,0,-267.323	0/1:189:105,83:105:3712:83:2969:-210.489,0,-277.325	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:105:105,0:105:3746:0:0:0,-31.6081,-337.338	0/0:35:35,0:35:1229:0:0:0,-10.536,-110.867	0/1:114:66,48:66:2368:48:1713:-120.136,0,-179.061	0/1:78:34,44:34:1194:44:1584:-119.371,0,-84.2809	0/1:67:31,36:31:1116:36:1292:-96.4148,0,-80.5827	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.275	0/1:116:62,53:62:2198:53:1893:-135.669,0,-163.104	0/0:105:105,0:105:3670:0:0:0,-31.6081,-330.5	0/1:116:44,72:44:1572:72:2565:-196.179,0,-106.852	0/0:164:164,0:164:5853:0:0:0,-49.3689,-526.882	0/1:115:54,61:54:1891:61:2196:-163.287,0,-135.844	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:124:124,0:124:4392:0:0:0,-37.3277,-395.45	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:127:66,61:66:2331:61:2192:-159.315,0,-171.814	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:82:47,35:47:1669:35:1241:-87.309,0,-125.811	0/0:98:97,1:97:3446:1:36:0,-25.9027,-306.753	0/0:1:1,0:1:21:0:0:0,-0.30103,-2.09995	0/0:160:160,0:160:5732:0:0:0,-48.1648,-515.996	0/1:119:57,62:57:2033:62:2220:-164.241,0,-147.418	0/1:78:32,46:32:1152:46:1656:-125.848,0,-80.5098	0/0:76:76,0:76:2697:0:0:0,-22.8783,-242.974	0/1:152:75,77:75:2575:77:2757:-202.613,0,-186.235	0/0:90:89,1:89:3128:1:36:0,-23.4944,-278.145	0/1:19:14,5:14:500:5:180:-10.8325,0,-39.6166	0/1:69:35,34:35:1237:34:1220:-89.3357,0,-90.8612	0/1:84:40,43:40:1424:43:1544:-113.908,0,-103.112	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2579	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/1:47:26,21:26:928:21:756:-54.2188,0,-69.6898	0/0:154:154,0:154:5494:0:0:0,-46.3586,-494.581	0/0:143:142,0:142:5028:0:0:0,-42.7463,-452.305	0/1:76:38,38:38:1319:38:1355:-99.3714,0,-96.1251	0/1:114:55,59:55:1912:59:2111:-155.941,0,-138.033	0/0:9:9,0:9:279:0:0:0,-2.70927,-25.4104	0/0:130:130,0:130:4642:0:0:0,-39.1339,-417.94	0/1:80:40,40:40:1391:40:1421:-104.103,0,-101.399	0/0:151:149,2:149:5352:2:72:0,-38.6188,-474.974	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/0:65:65,0:65:2283:0:0:0,-19.5669,-205.727	0/0:117:117,0:117:4162:0:0:0,-35.2205,-374.762	0/1:159:84,75:84:2985:75:2677:-193.311,0,-221.018	0/1:49:26,23:26:913:23:824:-59.7328,0,-67.7335	0/1:95:46,49:46:1652:49:1764:-130.446,0,-120.371	0/0:78:77,0:77:2757:0:0:0,-23.1793,-248.01	0/1:30:21,9:21:726:9:324:-20.475,0,-56.6251	0/1:61:27,34:27:972:34:1224:-92.1042,0,-69.4351	0/1:70:27,43:27:953:43:1540:-117.821,0,-65.0112	0/0:109:109,0:109:3845:0:0:0,-32.8123,-346.196	0/0:107:107,0:107:3780:0:0:0,-32.2102,-340.396
chr02	23204012	.	T	C	214463	PASS	AB=0.534903;ABP=55.1538;AC=142;AF=0.755319;AN=188;AO=8110;CIGAR=1X;DP=10422;DPB=10422;DPRA=37.3441;EPP=17613.7;EPPR=5008.25;GTI=1;LEN=1;MEANALT=1.07527;MQM=59.985;MQMR=59.9887;NS=94;NUMALT=1;ODDS=3.49644;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=283996;QR=81366;RO=2305;RPL=3397;RPP=466.719;RPPR=151.489;RPR=4713;RUN=1;SAF=3397;SAP=466.719;SAR=4713;SRF=954;SRP=151.489;SRR=1351;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	1/1:146:0,146:0:0:146:5090:-458.251,-43.9504,0	0/1:173:88,85:88:3104:85:3009:-218.963,0,-227.51	1/1:200:0,199:0:0:199:7017:-630.685,-59.905,0	0/1:30:25,5:25:896:5:176:-7.15412,0,-71.9295	0/1:49:18,31:18:648:31:1082:-82.9345,0,-43.9014	0/1:77:32,45:32:1148:45:1563:-117.778,0,-80.4505	1/1:151:0,150:0:0:150:5309:-477.588,-45.1545,0	1/1:87:0,87:0:0:87:3052:-274.91,-26.1896,0	1/1:147:0,147:0:0:147:5175:-465.893,-44.2514,0	1/1:111:0,111:0:0:111:3831:-344.992,-33.4143,0	0/1:172:83,89:83:2928:89:3097:-227.181,0,-211.978	1/1:177:0,177:0:0:177:6104:-549.473,-53.2823,0	0/1:154:53,101:53:1869:101:3503:-269.126,0,-122.129	0/1:129:59,70:59:2082:70:2420:-179.222,0,-148.817	0/1:106:39,67:39:1347:67:2352:-180.029,0,-89.6153	1/1:165:1,164:1:36:164:5682:-507.915,-46.0717,0	1/1:135:0,135:0:0:135:4661:-419.664,-40.6391,0	1/1:82:0,82:0:0:82:2822:-254.221,-24.6845,0	0/1:209:84,125:84:2987:125:4434:-336.318,0,-206.148	1/1:141:0,141:0:0:141:4956:-446.192,-42.4452,0	1/1:51:1,50:1:36:50:1766:-155.62,-11.7543,0	1/1:58:0,58:0:0:58:2063:-185.941,-17.4597,0	1/1:91:0,91:0:0:91:3198:-288.044,-27.3937,0	1/1:73:0,73:0:0:73:2583:-232.717,-21.9752,0	1/1:242:3,239:3:108:239:8482:-753.312,-62.7741,0	1/1:203:1,201:1:36:201:7118:-637.078,-57.5696,0	1/1:75:0,75:0:0:75:2617:-235.777,-22.5773,0	0/1:170:81,89:81:2876:89:3155:-232.999,0,-207.901	0/1:86:34,52:34:1195:52:1853:-141.161,0,-81.966	0/1:65:23,42:23:819:42:1482:-114.107,0,-54.4646	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:344:168,176:168:5917:176:6068:-442.685,0,-429.095	0/1:67:32,35:32:1143:35:1244:-92.0957,0,-83.0097	1/1:117:0,117:0:0:117:4022:-362.176,-35.2205,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:181:0,181:0:0:181:6398:-575.915,-54.4864,0	1/1:58:0,58:0:0:58:2021:-182.162,-17.4597,0	0/1:114:60,54:60:2136:54:1908:-137.678,0,-158.191	0/1:119:49,70:49:1712:70:2463:-186.103,0,-118.54	0/1:104:47,57:47:1656:57:1972:-146.443,0,-118.021	1/1:63:0,62:0:0:62:2182:-196.431,-18.6639,0	0/1:101:45,56:45:1595:56:1980:-148.069,0,-113.435	1/1:132:1,131:1:36:131:4619:-412.279,-36.1377,0	0/1:97:52,44:52:1808:44:1540:-109.67,0,-133.777	1/1:139:1,138:1:21:138:4885:-437.705,-39.7432,0	0/1:88:54,34:54:1931:34:1170:-79.1086,0,-147.575	0/1:10:5,5:5:165:5:180:-13.5418,0,-12.1633	1/1:116:0,116:0:0:116:4089:-368.2,-34.9195,0	1/1:64:0,64:0:0:64:2250:-202.76,-19.2659,0	0/1:6:2,4:2:72:4:125:-9.75244,0,-5.03054	0/1:146:74,72:74:2616:72:2521:-183.184,0,-191.737	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:15:5,10:5:176:10:356:-27.8658,0,-11.6696	0/1:114:47,67:47:1657:67:2371:-179.329,0,-115.098	1/1:210:1,209:1:32:209:7266:-650.814,-60.017,0	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:249:0,249:0:0:249:8724:-785.16,-74.9565,0	0/1:159:76,83:76:2695:83:2914:-214.63,0,-194.932	0/1:129:51,78:51:1804:78:2759:-209.72,0,-123.806	1/1:63:0,63:0:0:63:2240:-201.861,-18.9649,0	0/1:137:67,70:67:2370:70:2492:-183.29,0,-172.317	1/1:171:1,169:1:36:169:5958:-532.735,-47.9367,0	0/1:73:24,49:24:834:49:1699:-131.217,0,-53.4004	0/1:88:34,53:34:1212:53:1855:-140.677,0,-82.837	0/1:134:63,71:63:2200:71:2431:-178.704,0,-157.926	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:70:0,70:0:0:70:2482:-223.633,-21.0721,0	0/1:137:76,61:76:2705:61:2121:-149.914,0,-202.452	1/1:128:0,128:0:0:128:4492:-404.452,-38.5318,0	1/1:147:0,147:0:0:147:5184:-466.704,-44.2514,0	0/1:72:46,26:46:1605:26:932:-62.5247,0,-123.06	0/1:133:54,79:54:1904:79:2769:-209.413,0,-131.598	1/1:13:0,13:0:0:13:446:-40.4664,-3.91339,0	1/1:91:0,91:0:0:91:3221:-290.113,-27.3937,0	0/1:109:49,60:49:1739:60:2136:-159.696,0,-123.981	0/1:130:64,66:64:2280:66:2332:-171.004,0,-166.328	1/1:153:1,152:1:36:152:5269:-471.17,-42.87,0	1/1:189:0,189:0:0:189:6471:-582.498,-56.8947,0	1/1:160:0,160:0:0:160:5541:-498.827,-48.1648,0	0/1:261:131,130:131:4582:130:4522:-328.587,0,-333.981	0/1:50:25,25:25:878:25:876:-64.1055,0,-64.2844	0/1:157:75,82:75:2621:82:2826:-207.319,0,-188.875	1/1:125:0,125:0:0:125:4308:-387.904,-37.6288,0	0/1:115:51,64:51:1824:64:2220:-165.446,0,-129.823	0/1:164:64,100:64:2245:100:3470:-263.146,0,-152.944	0/1:121:74,47:74:2612:47:1655:-112.812,0,-198.903	1/1:169:0,169:0:0:169:5936:-534.354,-50.8741,0	1/1:239:1,238:1:36:238:8305:-743.875,-68.3479,0
chr02	23204780	.	CGAG	TGAA,TGAG	480573	PASS	AB=0.479602,0.517008;ABP=34.99,25.243;AC=141,45;AF=0.758065,0.241935;AN=186;AO=13290,4589;CIGAR=1X2M1X,1X3M;DP=17937;DPB=17945.8;DPRA=0,1.20721;EPP=28861.9,9959.21;EPPR=11.6962;GTI=0;LEN=4,1;MEANALT=2.12903,2.50909;MQM=59.9686,59.9837;MQMR=60;NS=93;NUMALT=2;ODDS=0.175037;PAIRED=0,0;PAIREDR=0;PAO=18,17;PQA=631.5,595.5;PQR=0;PRO=0;QA=463413,162727;QR=137;RO=4;RPL=5753,2087;RPP=523.029,84.5056;RPPR=5.18177;RPR=7537,2502;RUN=1,1;SAF=5753,2086;SAP=523.029,85.293;SAR=7537,2503;SRF=1;SRP=5.18177;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:0,75,1:0:0:75,1:2589,36:-232.813,-22.5773,0,-229.876,-19.28,-229.575	1/1:216:0,215,0:0:0:215,0:7456,0:-670.754,-64.7215,0,-670.754,-64.7215,-670.754	1/2:241:0,106,135:0:0:106,135:3674,4768:-687.254,-388.643,-356.734,-298.96,0,-258.321	1/1:357:0,355,0:0:0:355,0:12393,0:-1114.89,-106.866,0,-1114.89,-106.866,-1114.89	1/2:125:1,77,47:1:36:77,47:2723,1679:-355.369,-133.892,-113.65,-218.778,0,-207.567	1/2:112:0,54,58:0:0:54,58:1904,2049:-322.249,-167.221,-150.965,-155.381,0,-137.921	1/2:237:0,110,126:0:0:110,126:3851,4486:-678.756,-365.431,-332.317,-313.397,0,-275.467	1/1:309:0,307,1:0:0:307,1:10626,36:-955.958,-92.4162,0,-953.021,-89.4189,-952.72	1/1:216:0,214,1:0:0:214,1:7467,36:-671.735,-64.4204,0,-668.798,-61.478,-668.497	1/1:216:0,215,0:0:0:215,0:7433,0:-668.754,-64.7215,0,-668.754,-64.7215,-668.754	1/1:141:0,140,1:0:0:140,1:4881,36:-439.094,-42.1442,0,-436.157,-38.847,-435.856	1/2:198:0,102,95:0:0:102,95:3538,3387:-563.655,-276.088,-245.383,-287.558,0,-258.961	1/1:172:0,172,0:0:0:172,0:6039,0:-543.627,-51.7772,0,-543.627,-51.7772,-543.627	1/2:192:0,91,100:0:0:91,100:3165,3567:-548.199,-290.864,-263.471,-257.415,0,-227.312	1/2:158:1,72,85:1:36:72,85:2508,3009:-445.803,-242.157,-223.42,-201.001,0,-178.351	1/2:119:0,52,67:0:0:52,67:1836,2375:-343.291,-193.78,-178.126,-149.806,0,-129.637	1/1:140:0,138,0:0:0:138,0:4801,0:-431.956,-41.5421,0,-431.956,-41.5421,-431.956	1/1:103:0,103,0:0:0:103,0:3597,0:-323.94,-31.0061,0,-323.94,-31.0061,-323.94	1/1:69:0,69,0:0:0:69,0:2363,0:-212.929,-20.7711,0,-212.929,-20.7711,-212.929	1/2:309:0,128,179:0:0:128,179:4519,6347:-885.122,-517.13,-478.598,-368.035,0,-314.151	1/1:339:0,338,0:0:0:338,0:11636,0:-1046.86,-101.748,0,-1046.86,-101.748,-1046.86	1/1:129:0,129,0:0:0:129,0:4553,0:-409.881,-38.8329,0,-409.881,-38.8329,-409.881	1/1:249:0,249,0:0:0:249,0:8621,0:-775.858,-74.9565,0,-775.858,-74.9565,-775.858	1/1:203:0,202,0:0:0:202,0:7029,0:-632.392,-60.8081,0,-632.392,-60.8081,-632.392	1/1:131:0,130,0:0:0:130,0:4516,0:-406.333,-39.1339,0,-406.333,-39.1339,-406.333	1/1:420:0,418,0:0:0:418,0:14580,0:-1311.71,-125.831,0,-1311.71,-125.831,-1311.71	1/1:509:0,508,1:0:0:508,1:17814,36:-1602.43,-152.923,0,-1599.49,-149.626,-1599.19	1/1:81:0,81,0:0:0:81,0:2830,0:-254.94,-24.3834,0,-254.94,-24.3834,-254.94	1/2:518:0,298,217:0:0:298,217:10456,7772:-1484.73,-633.81,-544.103,-850.9,0,-785.577	1/2:318:0,135,181:0:0:135,181:4703,6384:-902.113,-519.799,-479.16,-382.418,0,-327.931	1/2:285:0,131,153:0:0:131,153:4541,5420:-810.538,-441.457,-402.022,-369.012,0,-322.954	1/1:21:0,21,0:0:0:21,0:744,0:-67.2277,-6.32163,0,-67.2277,-6.32163,-67.2277	1/1:27:0,27,0:0:0:27,0:952,0:-85.9936,-8.12781,0,-85.9936,-8.12781,-85.9936	1/1:7:0,6,0:0:0:6,0:216,0:-19.5248,-1.80618,0,-19.5248,-1.80618,-19.5248	1/2:12:0,7,5:0:0:7,5:219,171:-31.7997,-14.2203,-12.1131,-17.9092,0,-16.404	1/2:46:0,14,32:0:0:14,32:492,1139:-133.23,-93.1854,-88.971,-40.3975,0,-30.7646	1/2:391:0,192,199:0:0:192,199:6760,7030:-1123.2,-572.865,-515.067,-550.688,0,-490.783	1/2:272:0,118,154:0:0:118,154:4111,5450:-778.164,-443.854,-408.332,-334.241,0,-287.883	1/1:135:0,135,0:0:0:135,0:4752,0:-427.838,-40.6391,0,-427.838,-40.6391,-427.838	.:.:.:.:.:.:.:.	1/1:244:0,241,0:0:0:241,0:8379,0:-753.831,-72.5482,0,-753.831,-72.5482,-753.831	1/1:64:0,64,0:0:0:64,0:2253,0:-202.974,-19.2659,0,-202.974,-19.2659,-202.974	1/2:260:0,129,130:0:0:129,130:4429,4643:-738.148,-378.539,-339.706,-359.599,0,-320.465	1/2:179:0,87,91:0:0:87,91:3043,3205:-508.482,-260.919,-234.729,-247.555,0,-220.161	1/2:123:0,56,67:0:0:56,67:1921,2349:-347.46,-191.499,-174.642,-156.307,0,-136.138	1/1:211:0,211,0:0:0:211,0:7336,0:-660.312,-63.5173,0,-660.312,-63.5173,-660.312	1/2:194:0,94,100:0:0:94,100:3289,3522:-554.654,-287.088,-258.791,-267.917,0,-237.814	1/1:316:0,310,5:0:0:310,5:10819,180:-973.287,-93.3193,0,-958.6,-78.6325,-957.094	1/2:212:0,122,90:0:0:122,90:4268,3183:-606.832,-259.604,-222.878,-347.58,0,-320.487	1/1:247:0,247,0:0:0:247,0:8720,0:-784.807,-74.3544,0,-784.807,-74.3544,-784.807	1/2:242:0,131,111:0:0:131,111:4604,3943:-696.271,-321.531,-282.096,-374.975,0,-341.561	1/2:15:0,9,6:0:0:9,6:316,216:-43.6977,-17.9843,-15.2751,-26.0697,0,-24.2635	1/1:154:0,154,0:0:0:154,0:5414,0:-487.396,-46.3586,0,-487.396,-46.3586,-487.396	1/1:129:0,127,0:0:0:127,0:4387,0:-394.71,-38.2308,0,-394.71,-38.2308,-394.71	1/2:27:0,14,13:0:0:14,13:488,468:-78.2271,-38.5463,-34.3318,-40.0352,0,-36.1218	1/2:271:0,114,157:0:0:114,157:3965,54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chr02	23204819	.	C	T	45257.6	PASS	AB=0.525841;ABP=31.965;AC=43;AF=0.231183;AN=186;AO=2633;CIGAR=1X;DP=10015;DPB=10015;DPRA=1.28907;EPP=5711.81;EPPR=15965.5;GTI=3;LEN=1;MEANALT=1.10204;MQM=59.9692;MQMR=59.9729;NS=93;NUMALT=1;ODDS=1.14536;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94237;QR=262882;RO=7375;RPL=2632;RPP=5711.81;RPPR=15965.5;RPR=1;RUN=1;SAF=0;SAP=5720.5;SAR=2633;SRF=0;SRP=16017.6;SRR=7375;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:133:133,0:133:4734:0:0:0,-40.037,-426.22	0/1:128:50,78:50:1770:78:2755:-209.656,0,-121.05	0/0:174:173,1:173:6157:1:36:0,-48.7809,-550.615	0/1:75:46,29:46:1639:29:1031:-70.5254,0,-125.221	0/1:79:46,33:46:1631:33:1180:-82.7267,0,-123.297	0/1:137:71,66:71:2518:66:2353:-170.518,0,-185.631	0/0:191:191,0:191:6818:0:0:0,-57.4967,-613.684	0/0:125:124,0:124:4432:0:0:0,-37.3277,-398.692	0/0:160:160,0:160:5697:0:0:0,-48.1648,-512.832	0/0:60:59,1:59:2099:1:36:0,-14.4635,-185.581	0/1:78:39,39:39:1369:39:1400:-102.819,0,-100.018	0/0:70:70,0:70:2485:0:0:0,-21.0721,-223.902	0/1:102:43,59:43:1522:59:2124:-160.723,0,-106.567	0/1:81:36,45:36:1275:45:1616:-121.347,0,-90.6688	0/1:53:25,28:25:875:28:1004:-74.7213,0,-63.1115	0/0:97:97,0:97:3453:0:0:0,-29.1999,-310.982	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.733	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:185:79,106:79:2824:106:3775:-284.259,0,-198.709	0/0:156:156,0:156:5571:0:0:0,-46.9607,-501.506	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:137:137,0:137:4889:0:0:0,-41.2411,-440.162	0/0:132:132,0:132:4683:0:0:0,-39.736,-421.635	0/0:53:52,0:52:1856:0:0:0,-15.6536,-166.96	0/0:246:246,0:246:8808:0:0:0,-74.0534,-792.707	0/0:224:221,2:221:7882:2:72:0,-60.6522,-702.568	0/0:38:38,0:38:1338:0:0:0,-11.4391,-120.718	0/1:242:134,108:134:4779:108:3876:-276.185,0,-357.417	0/1:253:95,158:95:3395:158:5654:-432.804,0,-229.331	0/1:182:88,94:88:3131:94:3368:-248.548,0,-227.229	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:235:109,126:109:3916:126:4532:-337.303,0,-281.89	0/1:176:86,90:86:3037:90:3227:-237.67,0,-220.58	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.508	.:.:.:.:.:.:.:.	0/0:169:169,0:169:6017:0:0:0,-50.8741,-541.637	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:122:61,61:61:2164:61:2180:-159.741,0,-158.302	0/1:117:58,59:58:2059:59:2124:-156.208,0,-150.36	0/1:65:32,32:32:1148:32:1148:-84.0041,0,-84.0041	0/0:113:113,0:113:4032:0:0:0,-34.0164,-363.069	0/1:121:64,57:64:2288:57:2048:-148.167,0,-169.757	0/0:207:205,2:205:7312:2:72:0,-55.4765,-651.297	0/1:130:74,56:74:2644:56:2008:-141.859,0,-199.073	0/0:154:154,0:154:5519:0:0:0,-46.3586,-496.834	0/1:165:83,82:83:2947:82:2944:-215.523,0,-215.795	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/0:121:121,0:121:4328:0:0:0,-36.4246,-389.694	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/1:132:66,66:66:2347:66:2364:-173.282,0,-171.753	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.418	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:89:25,64:25:887:64:2284:-179.03,0,-53.3564	0/0:122:121,1:121:4281:1:36:0,-33.1274,-381.872	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:207:207,0:207:7369:0:0:0,-62.3132,-663.262	0/1:222:110,112:110:3924:112:4008:-294.081,0,-286.439	0/1:94:46,48:46:1644:48:1724:-127.149,0,-119.952	0/0:86:86,0:86:3067:0:0:0,-25.8886,-276.259	0/1:224:100,123:100:3580:123:4412:-329.761,0,-254.918	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.284	0/1:34:11,23:11:383:23:828:-64.6091,0,-24.5682	0/1:96:50,46:50:1779:46:1648:-119.71,0,-131.493	0/1:103:39,64:39:1392:64:2277:-174.184,0,-94.5729	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:118:118,0:118:4220:0:0:0,-35.5215,-379.981	0/1:68:25,43:25:896:43:1548:-119.143,0,-60.4903	0/0:226:226,0:226:8061:0:0:0,-68.0328,-725.511	0/0:189:189,0:189:6749:0:0:0,-56.8947,-607.484	0/1:147:80,67:80:2846:67:2397:-171.735,0,-212.126	0/1:141:69,71:69:2472:71:2547:-186.976,0,-180.23	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:124:123,1:123:4394:1:36:0,-33.7294,-392.034	0/1:151:80,70:80:2847:70:2489:-178.741,0,-210.954	0/1:167:88,79:88:3147:79:2798:-201.786,0,-233.183	0/0:98:98,0:98:3488:0:0:0,-29.5009,-314.133	0/0:93:93,0:93:3294:0:0:0,-27.9958,-296.308	0/0:120:120,0:120:4278:0:0:0,-36.1236,-385.198	0/1:155:82,73:82:2898:73:2620:-189.388,0,-214.397	0/1:49:20,29:20:708:29:1044:-79.5243,0,-49.2951	0/1:86:37,49:37:1320:49:1760:-132.795,0,-93.1996	0/0:84:84,0:84:2981:0:0:0,-25.2865,-268.522	0/1:62:28,34:28:1004:34:1218:-91.2629,0,-72.012	0/1:121:47,74:47:1670:74:2644:-201.773,0,-114.161	0/1:87:26,61:26:915:61:2172:-169.555,0,-56.476	0/0:130:130,0:130:4648:0:0:0,-39.1339,-418.483	0/0:106:106,0:106:3776:0:0:0,-31.9092,-340.041
chr02	23204831	.	T	C	156172	PASS	AB=0.47419;ABP=31.9302;AC=143;AF=0.768817;AN=186;AO=7445;CIGAR=1X;DP=10080;DPB=10080;DPRA=0;EPP=16169.6;EPPR=5713.98;GTI=3;LEN=1;MEANALT=1.05376;MQM=59.9698;MQMR=59.9692;NS=93;NUMALT=1;ODDS=0.647136;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=265673;QR=94240;RO=2630;RPL=7445;RPP=16169.6;RPPR=5713.98;RPR=0;RUN=1;SAF=0;SAP=16169.6;SAR=7445;SRF=0;SRP=5713.98;SRR=2630;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:132:0,132:0:0:132:4705:-423.61,-39.736,0	0/1:126:79,47:79:2825:47:1684:-113.917,0,-216.557	1/1:181:0,181:0:0:181:6449:-580.485,-54.4864,0	0/1:73:28,45:28:1004:45:1585:-120.963,0,-68.7007	0/1:77:35,42:35:1244:42:1508:-112.835,0,-89.0854	0/1:138:65,73:65:2332:73:2608:-193.426,0,-168.328	1/1:193:0,193:0:0:193:6875:-618.811,-58.0988,0	1/1:130:0,130:0:0:130:4617:-415.696,-39.1339,0	1/1:165:0,165:0:0:165:5861:-527.605,-49.67,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	0/1:80:39,41:39:1396:41:1444:-106.165,0,-101.857	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:101:59,42:59:2120:42:1473:-102.456,0,-160.664	0/1:82:45,37:45:1616:37:1301:-92.7057,0,-121.046	0/1:52:27,25:27:964:25:892:-64.9461,0,-71.4233	1/1:97:0,97:0:0:97:3464:-311.973,-29.1999,0	1/1:70:0,70:0:0:70:2499:-225.161,-21.0721,0	1/1:39:0,39:0:0:39:1381:-124.587,-11.7402,0	0/1:188:108,79:108:3865:79:2816:-197.025,0,-291.391	1/1:163:0,163:0:0:163:5806:-522.657,-49.0679,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:142:0,142:0:0:142:5051:-454.733,-42.7463,0	1/1:131:0,131:0:0:131:4680:-421.362,-39.4349,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:247:0,247:0:0:247:8829:-794.596,-74.3544,0	1/1:228:1,226:1:36:226:8035:-719.561,-65.0954,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:246:107,139:107:3836:139:4979:-374.202,0,-271.383	0/1:254:157,96:157:5632:96:3417:-231.174,0,-430.35	0/1:184:94,90:94:3380:90:3197:-232.564,0,-249.025	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:305:-27.7772,-2.70927,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:232:126,106:126:4528:106:3797:-272.087,0,-337.846	0/1:176:93,83:93:3332:83:2949:-212.662,0,-247.116	1/1:56:0,56:0:0:56:2012:-181.345,-16.8577,0	.:.:.:.:.:.:.:.	1/1:169:0,169:0:0:169:6038:-543.521,-50.8741,0	1/1:28:0,28:0:0:28:1008:-91.036,-8.42884,0	0/1:120:60,60:60:2156:60:2152:-157.824,0,-158.183	0/1:117:60,57:60:2152:57:2029:-147.661,0,-158.727	0/1:66:33,33:33:1176:33:1176:-86.2798,0,-86.2798	1/1:111:0,111:0:0:111:3958:-356.409,-33.4143,0	0/1:121:57,64:57:2044:64:2292:-170.117,0,-147.807	1/1:206:2,204:2:72:204:7280:-648.415,-55.1755,0	0/1:134:57,77:57:2052:77:2752:-207.584,0,-144.613	1/1:158:0,158:0:0:158:5653:-508.888,-47.5627,0	0/1:166:83,83:83:2957:83:2984:-218.82,0,-216.391	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:123:0,123:0:0:123:4393:-395.54,-37.0267,0	1/1:56:0,56:0:0:56:2012:-181.352,-16.8577,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:133:68,65:68:2433:65:2332:-170.103,0,-179.187	1/1:65:0,65:0:0:65:2305:-207.705,-19.567,0	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:91:63,28:63:2260:28:1004:-63.2821,0,-176.269	1/1:116:1,115:1:36:115:4120:-367.386,-31.3212,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:208:0,208:0:0:208:7464:-671.801,-62.6142,0	0/1:223:111,112:111:3972:112:4008:-293.694,0,-290.541	0/1:94:48,46:48:1709:46:1644:-119.952,0,-125.797	1/1:88:0,88:0:0:88:3145:-283.274,-26.4906,0	0/1:223:123,100:123:4386:100:3570:-254.376,0,-327.782	1/1:104:0,104:0:0:104:3713:-334.366,-31.3071,0	0/1:33:21,12:21:744:12:428:-28.9233,0,-57.3503	0/1:98:44,54:44:1584:54:1936:-144.98,0,-113.351	0/1:106:65,41:65:2332:41:1468:-100.507,0,-178.23	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:121:0,120:0:0:120:4250:-382.318,-36.1236,0	0/1:67:42,25:42:1508:25:881:-59.4369,0,-115.846	1/1:229:0,229:0:0:229:8132:-731.898,-68.9359,0	1/1:189:0,189:0:0:189:6764:-608.834,-56.8947,0	0/1:146:68,78:68:2440:78:2792:-207.57,0,-175.905	0/1:142:71,71:71:2548:71:2548:-186.824,0,-186.824	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:125:1,124:1:36:124:4440:-396.173,-34.0305,0	0/1:149:69,79:69:2472:79:2820:-209.128,0,-177.788	0/1:164:78,86:78:2808:86:3064:-226.621,0,-203.59	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	1/1:94:0,94:0:0:94:3351:-301.774,-28.2968,0	1/1:119:0,119:0:0:119:4272:-384.657,-35.8226,0	0/1:154:72,82:72:2576:82:2928:-217.396,0,-185.731	0/1:49:30,19:30:1076:19:684:-47.1399,0,-82.4024	0/1:86:49,37:49:1756:37:1320:-93.1996,0,-132.435	1/1:85:0,85:0:0:85:3032:-273.111,-25.5876,0	0/1:61:34,27:34:1224:27:966:-68.894,0,-92.1042	0/1:121:74,47:74:2645:47:1683:-115.333,0,-201.857	0/1:88:60,28:60:2152:28:1000:-63.8247,0,-167.457	1/1:131:0,131:0:0:131:4661:-419.62,-39.4349,0	1/1:107:0,107:0:0:107:3785:-340.848,-32.2102,0
chr02	23289862	.	T	C	28235.3	PASS	AB=0.542791;ABP=50.7704;AC=50;AF=0.265957;AN=188;AO=1648;CIGAR=1X;DP=5975;DPB=5975;DPRA=1.26711;EPP=3581.6;EPPR=9379.44;GTI=1;LEN=1;MEANALT=1.01887;MQM=59.6559;MQMR=59.9797;NS=94;NUMALT=1;ODDS=1.61013;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58955;QR=154652;RO=4326;RPL=1648;RPP=3581.6;RPPR=9379.44;RPR=0;RUN=1;SAF=0;SAP=3581.6;SAR=1648;SRF=0;SRP=9396.8;SRR=4326;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2095:0:0:0,-18.0618,-188.802	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/1:80:29,51:29:1044:51:1832:-141.07,0,-70.1924	0/0:119:118,1:118:4228:1:36:0,-32.2243,-377.101	0/1:47:29,18:29:1044:18:648:-44.4873,0,-80.1264	0/1:46:24,22:24:864:22:792:-57.7406,0,-64.2352	0/1:87:48,39:48:1728:39:1396:-99.7471,0,-129.616	0/0:94:94,0:94:3384:0:0:0,-28.2968,-304.774	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/0:72:72,0:72:2562:0:0:0,-21.6742,-230.827	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/1:61:32,29:32:1148:29:1031:-74.7351,0,-85.267	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	0/1:36:18,18:18:648:18:644:-47.4167,0,-47.8148	0/1:42:17,25:17:612:25:887:-67.5002,0,-42.7702	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:129:48,81:48:1724:81:2900:-221.617,0,-116.613	0/0:128:128,0:128:4600:0:0:0,-38.5318,-414.159	0/0:96:96,0:96:3429:0:0:0,-28.8989,-308.822	0/0:55:54,1:54:1906:1:36:0,-12.9584,-168.216	0/0:79:79,0:79:2809:0:0:0,-23.7814,-253.049	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:274:273,1:273:9721:1:32:0,-79.2829,-871.638	0/0:158:158,0:158:5657:0:0:0,-47.5627,-509.242	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:195:91,103:91:3253:103:3685:-273.229,0,-234.376	0/1:68:29,39:29:1036:39:1404:-106.083,0,-73.0839	0/1:80:36,44:36:1292:44:1584:-118.764,0,-92.5014	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.6223	0/1:131:69,62:69:2480:62:2213:-159.99,0,-184.018	0/1:117:56,61:56:2008:61:2196:-162.652,0,-145.773	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	1/1:4:0,4:0:0:4:140:-12.7488,-1.20412,0	0/0:69:69,0:69:2469:0:0:0,-20.7711,-222.462	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:141:70,71:70:2501:71:2556:-187.844,0,-182.896	0/1:29:16,13:16:561:13:464:-33.3676,0,-42.0842	0/1:31:17,14:17:612:14:500:-36.0019,0,-46.0815	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/1:71:27,44:27:957:44:1584:-121.477,0,-65.0707	0/0:127:124,3:124:4416:3:108:0,-28.1556,-387.537	0/1:116:68,48:68:2410:48:1720:-120.166,0,-182.234	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.794	0/1:145:70,75:70:2516:75:2692:-198.873,0,-183.042	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:84:38,46:38:1353:46:1607:-119.436,0,-96.7819	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/1:9:4,5:4:140:5:180:-13.8419,0,-10.2353	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	0/1:68:21,47:21:752:47:1669:-129.963,0,-47.5362	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.626	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:95:93,2:93:3310:2:72:0,-21.7611,-291.174	0/1:184:82,102:82:2929:102:3627:-271.197,0,-208.454	0/1:45:20,25:20:720:25:896:-67.414,0,-51.5824	0/0:28:27,1:27:968:1:36:0,-4.83056,-83.8382	0/1:136:63,73:63:2260:73:2582:-191.68,0,-162.723	0/1:115:35,80:35:1245:80:2861:-223.107,0,-77.7343	0/1:9:3,6:3:108:6:216:-17.0057,0,-7.3659	0/1:41:21,20:21:756:20:720:-52.7702,0,-56.025	0/1:39:18,21:18:648:21:752:-56.2661,0,-46.9117	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:140:140,0:140:4968:0:0:0,-42.1442,-447.266	0/1:87:37,50:37:1332:50:1794:-135.54,0,-93.9928	0/0:105:105,0:105:3723:0:0:0,-31.6081,-335.269	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:47:28,19:28:1004:19:680:-47.3808,0,-76.5275	0/1:46:12,34:12:432:34:1216:-95.8992,0,-25.3738	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:48:20,28:20:705:28:1004:-76.2194,0,-49.3233	0/1:98:35,63:35:1260:63:2264:-174.521,0,-84.2045	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:37:37,0:37:1298:0:0:0,-11.1381,-117.117	0/1:67:36,31:36:1296:31:1101:-79.227,0,-96.7749	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:50:27,23:27:972:23:828:-59.7844,0,-72.7464	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:35:19,16:19:680:16:570:-40.7186,0,-50.9931	0/1:39:12,27:12:428:27:972:-76.0577,0,-27.1186	0/0:91:91,0:91:3276:0:0:0,-27.3937,-295.059	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039
chr02	23322162	.	C	T	16156.8	PASS	AB=0.67661;ABP=802.233;AC=130;AF=0.691489;AN=188;AO=3941;CIGAR=1X;DP=5110;DPB=5110;DPRA=24.033;EPP=8517.41;EPPR=2310.19;GTI=19;LEN=1;MEANALT=1.01099;MQM=17.8297;MQMR=48.7628;NS=94;NUMALT=1;ODDS=0.0291714;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140625;QR=41620;RO=1168;RPL=3936;RPP=8517.41;RPPR=2310.19;RPR=5;RUN=1;SAF=0;SAP=8560.78;SAR=3941;SRF=0;SRP=2539.29;SRR=1168;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:680:-39.2549,-5.71957,0	1/1:34:1,33:1:32:33:1176:-65.127,-7.03571,0	0/1:106:29,77:29:1036:77:2753:-124.704,0,-59.1698	1/1:85:2,83:2:57:83:2965:-101.325,-20.266,0	0/1:68:11,57:11:387:57:2052:-69.7019,0,-13.6487	0/1:35:8,27:8:288:27:953:-44.1404,0,-15.4855	0/1:103:30,73:30:1080:73:2612:-64.1009,0,-66.1387	1/1:49:3,46:3:104:46:1648:-86.6753,-5.69681,0	1/1:29:0,29:0:0:29:1044:-58.2791,-8.72987,0	1/1:60:2,58:2:72:58:2050:-71.0365,-13.9138,0	1/1:18:0,18:0:0:18:648:-24.4092,-5.41854,0	0/1:90:29,61:29:1040:61:2188:-98.3637,0,-65.0268	1/1:48:0,48:0:0:48:1728:-97.7884,-14.4494,0	0/1:86:32,54:32:1152:54:1940:-59.353,0,-77.4444	0/1:47:16,31:16:576:31:1116:-24.7972,0,-37.8581	0/1:54:14,40:14:489:40:1430:-46.4779,0,-27.7663	1/1:33:1,32:1:36:32:1148:-62.0987,-6.36718,0	0/1:16:2,14:2:68:14:500:-24.2695,0,-1.61134	0/1:19:2,17:2:72:17:612:-30.0364,0,-1.05737	0/1:158:32,126:32:1148:126:4436:-114.887,0,-54.783	1/1:66:1,65:1:36:65:2313:-97.4746,-16.2697,0	0/1:7:1,6:1:36:6:216:-7.27564,0,-0.0759406	1/1:41:0,41:0:0:41:1476:-51.6123,-12.3422,0	1/1:36:1,35:1:36:35:1256:-54.4851,-7.27027,0	1/1:40:1,39:1:36:39:1374:-58.5881,-10.3465,0	1/1:16:1,15:1:27:15:540:-20.0386,-2.1167,0	1/1:114:2,112:2:72:112:4004:-170.56,-27.5405,0	1/1:20:0,20:0:0:20:711:-31.619,-6.0206,0	0/1:59:42,17:42:1489:17:608:-9.16264,0,-116.266	0/1:74:30,44:30:1052:44:1561:-47.3609,0,-72.2125	0/1:53:17,36:17:612:36:1257:-30.0872,0,-39.127	0/1:4:1,3:1:36:3:108:-4.08621,0,-2.36269	1/1:22:0,22:0:0:22:792:-33.6232,-6.62266,0	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	0/1:14:4,10:4:144:10:345:-16.2545,0,-8.99673	0/1:8:1,7:1:36:7:248:-11.6148,0,-1.15038	0/0:81:70,11:70:2508:11:392:0,-7.56679,-208.743	0/1:126:51,75:51:1816:75:2677:-80.5489,0,-124.823	1/1:28:2,26:2:68:26:936:-49.341,-4.30393,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.53612	1/1:70:1,69:1:36:69:2453:-102.981,-17.5053,0	1/1:16:1,15:1:21:15:540:-20.9476,-2.71653,0	0/1:73:29,44:29:1044:44:1576:-47.1163,0,-71.7885	0/1:52:16,36:16:576:36:1296:-29.7602,0,-36.3434	0/1:69:27,42:27:968:42:1485:-33.3512,0,-66.1374	0/1:5:2,3:2:72:3:89:-4.038,0,-3.94953	0/1:86:42,44:42:1504:44:1545:-64.5393,0,-106.195	1/1:75:4,71:4:140:71:2533:-79.3305,-9.73502,0	0/1:65:14,51:14:504:51:1836:-45.9562,0,-25.915	1/1:57:0,57:0:0:57:2040:-71.5443,-17.1587,0	0/0:46:37,9:37:1309:9:320:0,-1.32755,-103.172	0/1:11:8,3:8:273:3:108:-0.601325,0,-21.5135	1/1:79:1,78:1:36:78:2800:-156.751,-20.2146,0	1/1:7:0,7:0:0:7:233:-11.915,-2.10721,0	0/1:26:10,16:10:360:16:561:-24.9482,0,-23.9612	0/1:80:25,55:25:884:55:1980:-63.4783,0,-55.1803	1/1:19:0,19:0:0:19:665:-24.0857,-5.71957,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9304	0/1:45:12,33:12:428:33:1179:-38.3365,0,-24.9683	1/1:54:1,53:1:36:53:1904:-63.7195,-12.6573,0	0/1:4:1,3:1:32:3:108:-2.52281,0,-1.96932	1/1:8:0,7:0:0:7:252:-8.67519,-2.10721,0	0/1:74:30,44:30:1061:44:1556:-34.1233,0,-71.2538	0/1:70:24,46:24:860:46:1652:-53.3649,0,-56.1999	1/1:32:2,30:2:72:30:1076:-32.9453,-4.80396,0	0/1:85:23,62:23:824:62:2213:-53.0462,0,-47.6788	1/1:158:15,143:15:525:143:5087:-136.451,-0.626703,0	0/1:52:22,30:22:780:30:1050:-31.5133,0,-54.2709	0/1:57:16,41:16:568:41:1468:-65.6293,0,-33.445	0/0:45:42,3:42:1508:3:108:0,-9.63369,-131.676	1/1:26:2,24:2:68:24:864:-25.8479,-2.20022,0	1/1:117:3,114:3:108:114:4076:-226.509,-26.797,0	0/1:94:11,83:11:396:83:2944:-141.321,0,-5.87018	1/1:63:0,63:0:0:63:2256:-97.7962,-18.9649,0	1/1:80:2,78:2:72:78:2770:-92.4643,-17.2756,0	0/1:112:24,88:24:860:88:3122:-146.736,0,-42.602	0/1:104:33,71:33:1184:71:2539:-114.095,0,-74.0875	1/1:16:0,16:0:0:16:576:-33.2998,-4.81648,0	1/1:69:2,67:2:72:67:2400:-101.229,-15.7296,0	0/1:54:9,45:9:324:45:1589:-76.142,0,-12.925	0/1:123:26,97:26:932:97:3465:-86.8684,0,-46.8943	1/1:60:3,57:3:108:57:2048:-64.9921,-8.93172,0	1/1:30:1,29:1:36:29:1044:-34.2572,-5.43263,0	1/1:17:1,16:1:36:16:576:-19.1428,-2.93436,0	0/1:128:49,79:49:1737:79:2804:-63.2135,0,-116.902	0/1:36:18,18:18:648:18:648:-26.3084,0,-46.8789	0/1:62:20,42:20:720:42:1508:-67.5751,0,-45.4212	1/1:43:0,43:0:0:43:1539:-87.5974,-12.9443,0	0/1:57:29,28:29:1021:28:1000:-26.9869,0,-74.4878	0/1:143:59,84:59:2107:84:3004:-86.5375,0,-145.603	0/1:56:23,33:23:824:33:1188:-26.2141,0,-57.3867	1/1:76:0,76:0:0:76:2709:-96.6136,-22.8783,0	1/1:50:2,48:2:57:48:1714:-58.362,-9.8891,0
chr02	23322609	.	T	C	126501	PASS	AB=0.516853;ABP=38.5086;AC=94;AF=0.5;AN=188;AO=7437;CIGAR=1X;DP=14389;DPB=14389;DPRA=0;EPP=16152.3;EPPR=10109.5;GTI=0;LEN=1;MEANALT=1.03191;MQM=51.3514;MQMR=54.1062;NS=94;NUMALT=1;ODDS=119.097;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266265;QR=248767;RO=6949;RPL=0;RPP=16152.3;RPPR=15092.6;RPR=7437;RUN=1;SAF=7437;SAP=16152.3;SAR=0;SRF=6318;SRP=10109.5;SRR=631;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:94:55,39:55:1972:39:1404:-97.9015,0,-144.488	0/1:63:33,30:33:1176:30:1080:-78.1918,0,-84.8781	0/1:285:114,171:114:4049:171:6117:-457.739,0,-273.519	0/1:264:100,163:100:3576:163:5844:-443.988,0,-238.19	0/1:44:19,25:19:676:25:900:-67.5474,0,-40.9709	0/1:41:14,27:14:500:27:972:-74.2566,0,-30.5761	0/1:65:31,34:31:1108:34:1212:-88.5152,0,-78.9202	0/1:304:113,191:113:4025:191:6794:-517.295,0,-261.324	0/1:203:120,83:120:4316:83:2976:-205.917,0,-322.637	0/1:130:49,81:49:1752:81:2904:-221.575,0,-114.965	0/1:140:79,61:79:2816:61:2168:-153.062,0,-197.986	0/1:263:138,125:138:4943:125:4464:-314.947,0,-341.95	0/1:147:84,63:84:3024:63:2241:-157.039,0,-217.527	0/1:143:85,58:85:3021:58:2084:-144.168,0,-217.166	0/1:125:68,57:68:2444:57:2044:-141.752,0,-176.045	0/1:155:107,48:107:3821:48:1720:-107.461,0,-278.185	0/1:94:69,25:69:2480:25:900:-52.7507,0,-176.965	0/1:59:45,14:45:1616:14:500:-27.3619,0,-119.363	0/1:73:48,25:48:1728:25:896:-58.6305,0,-126.368	0/1:255:111,144:111:3984:144:5168:-378.922,0,-270.211	0/1:293:129,164:129:4620:164:5842:-436.27,0,-323.679	0/1:129:59,70:59:2081:70:2512:-187.265,0,-142.918	0/1:264:78,186:78:2804:186:6660:-519.335,0,-167.405	0/1:94:32,62:32:1144:62:2224:-171.657,0,-72.779	0/1:125:70,55:70:2481:55:1968:-139.367,0,-182.965	0/1:376:155,221:155:5556:221:7931:-597.286,0,-380.093	0/1:386:147,239:147:5268:239:8568:-653.363,0,-349.491	0/1:82:47,35:47:1676:35:1256:-88.4489,0,-117.647	0/1:389:145,244:145:5204:244:8756:-659.284,0,-349.442	0/1:175:57,118:57:2025:118:4206:-324.608,0,-128.705	0/1:177:88,89:88:3160:89:3192:-228.124,0,-228.729	0/1:9:7,2:7:252:2:72:-4.11443,0,-20.3089	0/1:34:10,24:10:356:24:860:-67.2134,0,-21.2062	0/1:9:4,5:4:144:5:180:-13.7765,0,-10.6043	0/1:17:12,5:12:432:5:180:-11.2261,0,-31.7181	0/1:16:5,11:5:180:11:396:-30.7544,0,-11.7356	0/1:390:227,163:227:8148:163:5844:-403.477,0,-600.915	0/1:143:64,79:64:2300:79:2828:-210.856,0,-159.542	0/1:93:54,39:54:1894:39:1396:-97.0412,0,-138.797	0/1:5:2,3:2:72:3:108:-8.4797,0,-5.33157	0/1:183:83,100:83:2980:100:3588:-267.23,0,-212.704	0/1:86:57,29:57:2052:29:1044:-68.1916,0,-150.82	0/1:207:74,133:74:2652:133:4768:-365.424,0,-169.881	0/1:134:80,54:80:2863:54:1928:-130.197,0,-205.231	0/1:138:93,45:93:3328:45:1612:-101.117,0,-240.711	0/1:213:119,94:119:4256:94:3380:-237.613,0,-312.667	0/1:182:69,113:69:2450:113:4044:-301.386,0,-161.993	0/1:318:155,162:155:5552:162:5816:-426.218,0,-400.174	0/1:143:87,56:87:3108:56:2004:-133.138,0,-235.118	0/1:170:68,102:68:2428:102:3656:-277.675,0,-163.764	0/1:150:79,71:79:2832:71:2524:-179.581,0,-207.299	0/1:10:3,7:3:108:7:252:-19.74,0,-6.6816	0/1:173:68,105:68:2429:105:3756:-285.065,0,-164.194	0/1:70:31,39:31:1112:39:1400:-104.947,0,-77.4346	0/1:5:2,3:2:72:3:108:-8.42609,0,-5.33157	0/1:220:91,129:91:3272:129:4608:-346.556,0,-225.338	0/1:72:42,30:42:1504:30:1072:-75.0367,0,-112.42	0/1:14:4,10:4:144:10:360:-27.8937,0,-8.71935	0/1:23:12,11:12:428:11:396:-28.611,0,-31.9351	0/1:130:63,67:63:2260:67:2400:-176.259,0,-160.325	0/1:225:136,89:136:4884:89:3196:-219.758,0,-354.268	0/1:18:3,15:3:108:15:540:-42.4477,0,-4.65663	0/1:351:135,216:135:4824:216:7728:-589.043,0,-325.469	0/1:157:84,73:84:3016:73:2628:-184.549,0,-221.872	0/1:112:65,47:65:2324:47:1676:-116.898,0,-172.901	0/1:128:36,92:36:1296:92:3277:-256.351,0,-77.4452	0/1:246:126,120:126:4496:120:4307:-307.235,0,-320.48	0/1:277:114,163:114:4096:163:5828:-427.239,0,-280.7	0/1:97:62,35:62:2216:35:1256:-83.7096,0,-157.561	0/1:78:40,38:40:1432:38:1352:-97.021,0,-102.294	0/1:132:97,35:97:3465:35:1260:-71.7778,0,-250.852	0/1:34:19,15:19:684:15:528:-37.3668,0,-48.7356	0/1:171:63,108:63:2260:108:3880:-295.29,0,-148.421	0/1:163:59,103:59:2112:103:3688:-278.299,0,-137.598	0/1:338:178,160:178:6384:160:5723:-410.558,0,-466.973	0/1:298:100,198:100:3584:198:7092:-548.087,0,-227.326	0/1:122:48,74:48:1720:74:2648:-197.971,0,-112.557	0/1:205:98,107:98:3512:107:3829:-278.954,0,-248.649	0/1:15:8,7:8:288:7:252:-18.4261,0,-21.752	0/1:153:40,113:40:1428:113:4048:-317.735,0,-79.8211	0/1:136:61,75:61:2180:75:2668:-196.158,0,-151.607	0/1:313:159,154:159:5692:154:5520:-393.476,0,-413.61	0/1:112:72,40:72:2584:40:1436:-95.4463,0,-191.692	0/1:133:72,61:72:2580:61:2184:-156.448,0,-184.981	0/1:149:93,56:93:3340:56:2016:-135.27,0,-234.173	0/1:238:127,111:127:4548:111:3984:-279.297,0,-324.692	0/1:59:34,25:34:1220:25:892:-61.9203,0,-89.9795	0/1:139:80,59:80:2876:59:2120:-146.919,0,-205.76	0/1:186:111,75:111:3983:75:2688:-184.828,0,-288.896	0/1:87:56,31:56:1988:31:1116:-74.2262,0,-145.322	0/1:191:109,82:109:3900:82:2924:-204.329,0,-282.424	0/1:86:54,32:54:1928:32:1082:-70.2481,0,-141.268	0/1:214:107,107:107:3832:107:3840:-281.061,0,-268.715	0/1:232:149,83:149:5333:83:2976:-197.888,0,-381.712
chr02	23322620	.	G	A	82896.5	PASS	AB=0.381926;ABP=1786.5;AC=94;AF=0.5;AN=188;AO=5625;CIGAR=1X;DP=14728;DPB=14728;DPRA=0;EPP=12208.9;EPPR=14734.3;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.2119;MQMR=48.3563;NS=94;NUMALT=1;ODDS=87.3604;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200694;QR=323527;RO=9102;RPL=0;RPP=12217.5;RPPR=19767.8;RPR=5625;RUN=1;SAF=5624;SAP=12208.9;SAR=1;SRF=8480;SRP=14734.3;SRR=622;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:94:48,46:48:1724:46:1641:-119.651,0,-121.831	0/1:67:37,30:37:1275:30:1061:-75.6304,0,-91.4614	0/1:293:191,102:191:6767:102:3656:-240.775,0,-505.96	0/1:273:176,97:176:6256:97:3457:-229.133,0,-471.406	0/1:46:34,12:34:1190:12:428:-25.0007,0,-86.527	0/1:44:33,11:33:1180:11:396:-22.702,0,-88.904	0/1:67:40,27:40:1436:27:964:-66.8342,0,-104.501	0/1:309:210,99:210:7440:99:3510:-220.616,0,-566.07	0/1:209:96,113:96:3417:113:4015:-297.836,0,-239.88	0/1:138:97,41:97:3408:41:1457:-89.8818,0,-260.439	0/1:144:101,43:101:3518:43:1536:-95.1146,0,-257.779	0/1:263:195,68:195:6938:68:2436:-140.167,0,-514.848	0/1:147:95,52:95:3382:52:1860:-123.393,0,-248.816	0/1:143:92,51:92:3276:51:1824:-121.362,0,-239.786	0/1:124:75,49:75:2677:49:1749:-120.346,0,-194.72	0/1:157:98,59:98:3484:59:2120:-142.951,0,-248.184	0/1:93:77,16:77:2768:16:576:-24.1615,0,-201.731	0/1:58:37,21:37:1328:21:756:-50.8228,0,-93.8758	0/1:77:52,25:52:1868:25:896:-57.7625,0,-137.107	0/1:261:160,101:160:5675:101:3586:-244.306,0,-411.326	0/1:299:174,125:174:6181:125:4450:-309.954,0,-461.17	0/1:134:80,54:80:2864:54:1932:-133.794,0,-209.637	0/1:272:198,74:198:7058:74:2625:-154.429,0,-545.43	0/1:95:67,28:67:2378:28:1004:-62.0765,0,-182.844	0/1:132:67,65:67:2389:65:2309:-168.29,0,-170.524	0/1:390:239,151:239:8451:151:5403:-367.951,0,-636.907	0/1:391:251,140:251:8884:140:4960:-327.338,0,-672.431	0/1:85:67,18:67:2403:18:644:-32.7021,0,-180.435	0/1:403:259,144:259:9183:144:5112:-338.025,0,-689.46	0/1:175:120,55:120:4246:55:1980:-125.77,0,-325.294	0/1:179:97,82:97:3412:82:2914:-207.57,0,-243.49	0/1:9:2,7:2:72:7:248:-19.9441,0,-4.11443	0/1:33:26,7:26:913:7:252:-13.095,0,-71.2337	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.7765	0/1:17:8,9:8:288:9:324:-24.3883,0,-18.5467	0/1:17:11,6:11:396:6:216:-14.673,0,-30.4534	0/1:399:212,187:212:7546:187:6699:-481.811,0,-539.22	0/1:149:91,58:91:3243:58:2073:-141.872,0,-239.74	0/1:92:53,39:53:1891:39:1396:-98.2443,0,-136.87	0/1:6:4,2:4:144:2:72:-5.03054,0,-10.5395	0/1:186:104,82:104:3685:82:2944:-208.682,0,-274.525	0/1:91:56,35:56:1993:35:1252:-85.5807,0,-143.816	0/1:217:156,61:156:5573:61:2196:-132.518,0,-425.32	0/1:140:86,54:86:3050:54:1932:-131.846,0,-216.613	0/1:139:98,41:98:3469:41:1468:-90.5667,0,-250.864	0/1:215:102,113:102:3566:113:3996:-294.925,0,-250.6	0/1:191:127,64:127:4537:64:2251:-144.829,0,-333.098	0/1:326:172,154:172:6160:154:5528:-399.147,0,-447.693	0/1:144:60,84:60:2141:84:3012:-226.924,0,-143.52	0/1:175:113,62:113:4049:62:2171:-141.921,0,-305.906	0/1:151:75,76:75:2658:76:2690:-196.61,0,-188.297	0/1:10:8,2:8:288:2:72:-3.82642,0,-22.2853	0/1:180:121,59:121:4329:59:2067:-132.11,0,-330.225	0/1:70:44,26:44:1554:26:936:-63.4572,0,-116.887	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.42609	0/1:230:140,90:140:5008:90:3217:-219.746,0,-372.886	0/1:77:40,37:40:1421:37:1316:-95.5472,0,-102.119	0/1:14:11,3:11:396:3:108:-5.86075,0,-30.7595	0/1:22:9,13:9:320:13:468:-35.8288,0,-22.1514	0/1:135:78,57:78:2778:57:2044:-143.112,0,-204.344	0/1:233:145,88:145:5200:88:3160:-214.456,0,-377.277	0/1:16:13,3:13:445:3:108:-5.25869,0,-35.5278	0/1:360:227,133:227:8120:133:4776:-321.493,0,-616.434	0/1:164:81,83:81:2893:83:2976:-218.622,0,-203.104	0/1:113:57,56:57:2029:56:2001:-146.324,0,-145.534	0/1:134:96,38:96:3414:38:1353:-81.5722,0,-265.852	0/1:251:138,113:138:4944:113:4015:-285.883,0,-353.137	0/1:279:170,109:170:6066:109:3905:-267.295,0,-442.289	0/1:103:75,28:75:2675:28:1008:-59.7969,0,-191.097	0/1:78:46,32:46:1637:32:1121:-77.6524,0,-119.671	0/1:139:104,35:104:3633:35:1256:-70.8995,0,-263.084	0/1:36:18,18:18:621:18:644:-47.4411,0,-42.5525	0/1:175:116,59:116:4110:59:2112:-137.634,0,-307.259	0/1:164:107,57:107:3818:57:2033:-133.724,0,-285.527	0/1:344:180,164:180:6388:164:5869:-424.138,0,-461.871	0/1:308:216,92:216:7685:92:3269:-201.572,0,-591.585	0/1:121:79,42:79:2817:42:1489:-97.4343,0,-208.041	0/1:213:122,91:122:4320:91:3230:-226.442,0,-313.428	0/1:15:7,8:7:252:8:288:-21.752,0,-18.4261	0/1:157:121,36:121:4314:36:1262:-66.5207,0,-338.526	0/1:142:85,56:85:3025:56:1995:-136.59,0,-220.573	0/1:319:164,155:164:5851:155:5511:-399.543,0,-417.274	0/1:114:61,53:61:2184:53:1904:-137.311,0,-154.076	0/1:135:81,54:81:2895:54:1936:-133.701,0,-210.8	0/1:151:121,30:121:4317:30:1080:-51.5604,0,-317.377	0/1:237:143,94:143:5121:94:3376:-232.669,0,-369.558	0/1:59:31,28:31:1112:28:993:-71.7287,0,-79.6652	0/1:139:92,47:92:3287:47:1688:-110.26,0,-240.473	0/1:190:115,75:115:4068:75:2684:-183.902,0,-294.702	0/1:89:54,35:54:1909:35:1252:-86.1934,0,-137.085	0/1:192:114,78:114:4059:78:2754:-189.991,0,-296.157	0/1:90:52,38:52:1708:38:1359:-95.4807,0,-114.923	0/1:221:125,96:125:4405:96:3422:-241.126,0,-317.057	0/1:236:168,68:168:5993:68:2444:-149.172,0,-434.436
chr02	23322641	.	C	T	83312.5	PASS	AB=0.381717;ABP=1780.39;AC=94;AF=0.5;AN=188;AO=5583;CIGAR=1X;DP=14626;DPB=14626;DPRA=0;EPP=12039.6;EPPR=13544.4;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.2364;MQMR=48.3368;NS=94;NUMALT=1;ODDS=87.6059;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199756;QR=320460;RO=9037;RPL=5574;RPP=12048.3;RPPR=18429.4;RPR=9;RUN=1;SAF=5582;SAP=12117.7;SAR=1;SRF=8412;SRP=14573.4;SRR=625;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:96:49,46:49:1743:46:1652:-120.042,0,-123.193	0/1:67:38,29:38:1350:29:1040:-73.7454,0,-98.1	0/1:292:191,101:191:6751:101:3621:-237.902,0,-505.672	0/1:269:175,93:175:6216:93:3307:-217.051,0,-470.808	0/1:46:34,12:34:1203:12:428:-25.0007,0,-86.5021	0/1:43:32,11:32:1139:11:396:-23.003,0,-85.8231	0/1:66:40,26:40:1436:26:932:-64.2573,0,-104.731	0/1:308:211,97:211:7468:97:3488:-219.024,0,-568.16	0/1:209:97,112:97:3438:112:4011:-298.004,0,-240.747	0/1:133:92,41:92:3273:41:1446:-90.3949,0,-249.128	0/1:143:100,43:100:3526:43:1539:-95.6848,0,-259.043	0/1:265:197,68:197:6910:68:2392:-135.671,0,-513.023	0/1:146:92,53:92:3253:53:1900:-127.236,0,-237.965	0/1:144:93,51:93:3335:51:1819:-120.621,0,-243.536	0/1:128:80,48:80:2837:48:1715:-116.085,0,-204.759	0/1:157:99,58:99:3465:58:2088:-139.84,0,-246.736	0/1:93:77,16:77:2744:16:576:-24.1615,0,-200.294	0/1:59:38,21:38:1343:21:756:-50.5218,0,-94.685	0/1:74:49,25:49:1738:25:900:-59.0262,0,-127.247	0/1:263:158,105:158:5639:105:3761:-259.426,0,-404.972	0/1:294:170,124:170:6014:124:4442:-310.872,0,-447.458	0/1:132:78,54:78:2758:54:1934:-134.579,0,-204.121	0/1:269:195,74:195:6928:74:2641:-156.766,0,-534.583	0/1:95:67,28:67:2370:28:1008:-62.437,0,-182.143	0/1:128:64,64:64:2273:64:2283:-167.149,0,-162.358	0/1:382:232,150:232:8271:150:5384:-368.644,0,-619.557	0/1:388:247,141:247:8767:141:5047:-336.065,0,-664.486	0/1:84:66,18:66:2345:18:648:-33.3645,0,-175.992	0/1:396:253,143:253:8976:143:5127:-341.144,0,-673.614	0/1:172:117,55:117:4155:55:1963:-125.143,0,-317.841	0/1:177:95,82:95:3367:82:2929:-210.272,0,-240.244	0/1:9:2,7:2:72:7:252:-20.3089,0,-4.11443	0/1:34:27,7:27:968:7:252:-12.7939,0,-75.8131	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.7765	0/1:17:8,9:8:288:9:324:-24.3883,0,-18.5467	0/1:16:11,5:11:392:5:180:-11.7356,0,-30.3981	0/1:396:211,185:211:7461:185:6629:-476.439,0,-532.376	0/1:148:91,57:91:3199:57:2020:-137.405,0,-235.754	0/1:93:53,40:53:1892:40:1440:-101.902,0,-136.531	0/1:6:4,2:4:144:2:72:-5.03054,0,-10.5395	0/1:186:103,83:103:3626:83:2968:-211.054,0,-269.233	0/1:91:55,36:55:1958:36:1296:-88.5182,0,-141.344	0/1:215:154,61:154:5485:61:2166:-130.428,0,-418.407	0/1:138:85,53:85:3010:53:1899:-129.475,0,-214.742	0/1:139:98,41:98:3455:41:1476:-91.2868,0,-249.741	0/1:211:101,110:101:3579:110:3937:-290.766,0,-250.581	0/1:188:125,63:125:4416:63:2255:-146.077,0,-323.903	0/1:320:169,151:169:5953:151:5367:-386.799,0,-431.414	0/1:145:60,85:60:2152:85:3028:-228.067,0,-144.28	0/1:172:111,61:111:3949:61:2177:-144.112,0,-297.82	0/1:147:73,74:73:2570:74:2651:-194.302,0,-181.429	0/1:10:8,2:8:288:2:72:-3.82642,0,-22.2853	0/1:179:119,60:119:4252:60:2152:-140.063,0,-323.643	0/1:69:44,25:44:1555:25:900:-60.5198,0,-117.626	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.0603	0/1:228:140,88:140:4972:88:3156:-214.862,0,-372.197	0/1:76:38,38:38:1347:38:1342:-98.1932,0,-95.8389	0/1:14:11,3:11:392:3:108:-5.86075,0,-30.4375	0/1:23:11,12:11:384:12:432:-32.2975,0,-27.5706	0/1:135:79,56:79:2803:56:2007:-139.792,0,-205.755	0/1:234:145,88:145:5123:88:3160:-214.185,0,-372.39	0/1:18:15,3:15:536:3:108:-4.65663,0,-42.0897	0/1:357:224,133:224:7985:133:4784:-323.11,0,-605.227	0/1:165:82,83:82:2915:83:2975:-218.241,0,-204.908	0/1:113:56,56:56:1968:56:2012:-147.326,0,-140.122	0/1:131:94,37:94:3368:37:1328:-80.2459,0,-262.541	0/1:248:135,113:135:4787:113:4034:-288.494,0,-340.435	0/1:275:166,109:166:5867:109:3911:-269.039,0,-428.862	0/1:98:70,28:70:2503:28:1008:-61.3021,0,-177.556	0/1:77:47,30:47:1672:30:1067:-73.0993,0,-122.477	0/1:139:104,35:104:3711:35:1247:-70.0883,0,-268.305	0/1:35:18,17:18:631:17:597:-43.5137,0,-43.7623	0/1:176:117,59:117:4141:59:2116:-137.692,0,-309.944	0/1:162:107,55:107:3801:55:1967:-128.408,0,-285.136	0/1:339:180,159:180:6433:159:5697:-410.179,0,-466.481	0/1:307:215,92:215:7641:92:3300:-204.665,0,-586.837	0/1:120:77,43:77:2706:43:1539:-102.235,0,-197.857	0/1:209:120,89:120:4262:89:3196:-224.487,0,-310.475	0/1:15:7,8:7:252:8:288:-21.752,0,-18.4261	0/1:153:119,34:119:4239:34:1214:-63.4744,0,-333.258	0/1:144:87,57:87:3076:57:2039:-139.994,0,-225.036	0/1:317:164,153:164:5845:153:5483:-397.642,0,-416.199	0/1:116:62,54:62:2213:54:1918:-137.964,0,-155.921	0/1:135:81,54:81:2833:54:1944:-134.416,0,-207.185	0/1:151:120,31:120:4260:31:1112:-54.6539,0,-313.479	0/1:238:145,93:145:5139:93:3298:-225.339,0,-370.174	0/1:59:32,27:32:1135:27:949:-67.9551,0,-81.4571	0/1:140:94,46:94:3326:46:1643:-105.91,0,-243.061	0/1:190:115,75:115:4089:75:2687:-182.982,0,-297.234	0/1:90:56,34:56:1991:34:1224:-83.3743,0,-143.79	0/1:191:114,77:114:3991:77:2746:-189.778,0,-291.121	0/1:93:55,38:55:1926:38:1360:-94.6732,0,-134.565	0/1:219:123,95:123:4317:95:3382:-238.207,0,-311.17	0/1:235:166,69:166:5901:69:2476:-152.351,0,-427.524
chr02	23322644	.	C	T	95441.9	PASS	AB=0.441262;ABP=404.786;AC=93;AF=0.494681;AN=188;AO=5917;CIGAR=1X;DP=13420;DPB=13420;DPRA=0;EPP=12842.9;EPPR=16265.2;GTI=1;LEN=1;MEANALT=1.06383;MQM=53.6721;MQMR=54.5337;NS=94;NUMALT=1;ODDS=99.5996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211919;QR=267584;RO=7497;RPL=5915;RPP=12834.2;RPPR=16273.9;RPR=2;RUN=1;SAF=5916;SAP=12842.9;SAR=1;SRF=7496;SRP=16273.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:46,39:46:1648:39:1390:-99.3851,0,-121.453	0/1:62:32,30:32:1139:30:1072:-77.8039,0,-81.1958	0/1:282:180,102:180:6409:102:3642:-242.028,0,-481.259	0/1:271:102,169:102:3638:169:6043:-458.267,0,-238.868	0/1:42:32,10:32:1144:10:360:-20.0312,0,-83.5947	0/1:43:28,15:28:1000:15:536:-35.4765,0,-73.7058	0/1:63:39,24:39:1395:24:860:-58.6921,0,-103.418	0/1:300:105,195:105:3750:195:6977:-534.902,0,-240.104	0/1:203:115,88:115:4099:88:3164:-222.447,0,-305.446	0/1:129:45,84:45:1616:84:3014:-231.784,0,-104.061	0/1:107:43,63:43:1536:63:2268:-171.91,0,-103.293	0/1:198:126,72:126:4472:72:2545:-167.218,0,-335.804	0/1:119:55,64:55:1956:64:2288:-169.687,0,-139.583	0/1:112:80,32:80:2836:32:1152:-70.0785,0,-220.653	0/1:109:74,35:74:2643:35:1247:-77.3811,0,-202.014	0/1:106:85,21:85:3015:21:756:-36.3321,0,-237.124	0/1:42:17,25:17:612:25:896:-68.05,0,-40.9385	0/1:35:22,13:22:792:13:468:-31.7833,0,-60.8985	0/1:55:28,27:28:995:27:968:-70.6062,0,-73.095	0/1:259:191,68:191:6843:68:2442:-141.868,0,-514.993	0/1:291:126,165:126:4490:165:5898:-441.957,0,-313.202	0/1:130:61,69:61:2192:69:2476:-183.729,0,-151.618	0/1:271:79,190:79:2820:190:6809:-531.006,0,-165.128	0/1:94:30,64:30:1080:64:2296:-178.127,0,-67.5844	0/1:123:65,58:65:2328:58:2065:-148.683,0,-170.25	0/1:384:157,226:157:5599:226:8100:-610.02,0,-381.385	0/1:388:149,239:149:5321:239:8528:-649.257,0,-353.391	0/1:56:20,36:20:716:36:1296:-99.8645,0,-46.792	0/1:397:272,125:272:9711:125:4470:-281.839,0,-740.566	0/1:172:106,66:106:3766:66:2366:-160.968,0,-284.141	0/1:170:127,42:127:4564:42:1495:-83.6295,0,-352.272	0/1:9:7,2:7:248:2:72:-4.11443,0,-19.9441	0/1:30:6,24:6:216:24:860:-68.4149,0,-10.7596	0/1:9:4,5:4:144:5:180:-13.7765,0,-10.6043	0/1:14:11,3:11:396:3:108:-5.82773,0,-29.9536	0/1:17:10,7:10:356:7:248:-17.482,0,-26.9658	0/1:362:261,101:261:9328:101:3628:-217.31,0,-721.067	0/1:144:102,42:102:3655:42:1508:-92.4179,0,-279.638	0/1:78:40,38:40:1440:38:1364:-98.872,0,-105.86	0/1:6:4,2:4:144:2:72:-4.95714,0,-10.6109	0/1:185:85,100:85:3028:100:3566:-264.661,0,-216.253	0/1:70:36,34:36:1264:34:1224:-89.2004,0,-91.9557	0/1:202:126,76:126:4515:76:2736:-185.141,0,-339.042	0/1:113:85,28:85:3006:28:995:-55.7873,0,-230.754	0/1:85:60,25:60:2118:25:900:-55.6555,0,-161.78	0/1:213:119,94:119:4271:94:3375:-237.145,0,-315.313	0/1:185:130,55:130:4645:55:1972:-121.032,0,-347.152	0/1:318:156,162:156:5531:162:5805:-426.303,0,-394.895	0/1:142:121,21:121:4328:21:752:-25.2044,0,-340.741	0/1:166:63,103:63:2256:103:3689:-281.856,0,-149.563	0/1:152:112,40:112:4007:40:1425:-82.0591,0,-309.419	0/1:10:5,5:5:180:5:176:-13.1603,0,-12.9533	0/1:174:62,112:62:2228:112:4032:-309.533,0,-146.744	0/1:64:27,37:27:972:37:1319:-99.4817,0,-68.4321	0/1:5:2,3:2:72:3:108:-8.42609,0,-5.33157	0/1:228:157,71:157:5613:71:2548:-160.317,0,-428.549	0/1:70:37,33:37:1328:33:1179:-85.2642,0,-97.4899	0/0:13:12,1:12:432:1:36:0,-0.318822,-34.995	0/1:23:18,5:18:648:5:180:-9.6015,0,-51.3084	0/1:127:88,39:88:3140:39:1404:-88.0829,0,-240.709	0/1:186:94,92:94:3364:92:3303:-241.248,0,-242.732	0/1:17:3,14:3:99:14:504:-40.536,0,-4.11907	0/1:356:138,218:138:4922:218:7830:-596.701,0,-331.071	0/1:158:124,34:124:4445:34:1220:-62.4202,0,-345.829	0/1:106:72,34:72:2584:34:1209:-76.9469,0,-200.586	0/1:134:41,93:41:1467:93:3325:-258.864,0,-90.7329	0/1:239:168,71:168:5979:71:2544:-157.063,0,-454.36	0/1:271:200,71:200:7140:71:2533:-146.163,0,-545.292	0/1:68:47,21:47:1651:21:748:-47.0435,0,-123.866	0/1:69:46,23:46:1628:23:828:-53.8233,0,-124.665	0/1:71:54,17:54:1884:17:612:-33.9614,0,-146.317	0/1:36:20,16:20:716:16:572:-40.7438,0,-51.0055	0/1:175:68,107:68:2423:107:3818:-288.536,0,-158.763	0/1:159:105,54:105:3751:54:1940:-126.14,0,-282.918	0/1:327:166,161:166:5951:161:5711:-414.249,0,-435.975	0/1:293:91,202:91:3249:202:7260:-564.658,0,-198.689	0/1:118:87,31:87:3107:31:1116:-64.8882,0,-235.729	0/1:206:138,68:138:4904:68:2448:-157.818,0,-370.277	0/1:14:7,7:7:252:7:244:-18.0161,0,-18.8145	0/1:151:37,114:37:1315:114:4081:-321.284,0,-71.9041	0/1:138:97,41:97:3479:41:1472:-90.7328,0,-264.26	0/1:314:231,83:231:8251:83:2975:-173.233,0,-635.053	0/1:96:56,40:56:1991:40:1432:-99.9064,0,-149.002	0/1:115:55,60:55:1976:60:2152:-158.989,0,-140.207	0/1:90:34,56:34:1215:56:1997:-152.194,0,-77.1232	0/1:209:151,58:151:5393:58:2088:-125.107,0,-411.348	0/1:51:34,16:34:1220:16:572:-36.2948,0,-93.9888	0/1:106:67,39:67:2404:39:1400:-93.892,0,-182.867	0/1:155:79,76:79:2794:76:2723:-197.268,0,-202.455	0/1:68:46,22:46:1652:22:790:-50.7867,0,-127.741	0/1:164:115,49:115:4087:49:1764:-108.343,0,-317.618	0/1:75:62,13:62:2215:13:468:-19.8464,0,-168.606	0/1:217:109,108:109:3863:108:3877:-283.467,0,-270.176	0/1:156:72,84:72:2579:84:3015:-224.272,0,-179.351
chr02	23322697	.	T	C	692.809	PASS	AB=0.523259;ABP=60.2836;AC=93;AF=0.5;AN=186;AO=6445;CIGAR=1X;DP=12432;DPB=12432;DPRA=45.0326;EPP=13989.5;EPPR=12897.4;GTI=72;LEN=1;MEANALT=1.01087;MQM=14.7258;MQMR=33.0145;NS=93;NUMALT=1;ODDS=0.927797;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227633;QR=214303;RO=5986;RPL=2;RPP=13980.8;RPPR=12897.4;RPR=6443;RUN=1;SAF=1;SAP=13989.5;SAR=6444;SRF=0;SRP=13001.4;SRR=5986;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:15,23:15:531:23:805:-11.2875,0,-36.3645	0/1:216:92,124:92:3300:124:4435:-57.1516,0,-229.827	0/1:66:18,48:18:648:48:1687:-29.6399,0,-34.7697	0/1:179:102,77:102:3664:77:2709:-62.971,0,-204.419	0/1:53:34,19:34:1216:19:671:-7.97136,0,-55.0086	0/1:46:13,33:13:464:33:1171:-18.7036,0,-27.9704	0/1:184:82,102:82:2940:102:3587:-99.279,0,-106.54	0/1:194:84,110:84:3012:110:3893:-49.8967,0,-210.429	0/1:185:93,92:93:3327:92:3255:-34.995,0,-241.19	0/1:200:97,103:97:3453:103:3639:-95.3913,0,-187.446	0/1:96:60,36:60:2148:36:1262:-25.1032,0,-122.038	0/1:138:51,87:51:1832:87:3068:-46.4481,0,-119.455	0/1:151:87,64:87:3115:64:2258:-19.8096,0,-230.981	0/1:138:73,65:73:2620:65:2267:-40.4453,0,-95.7955	0/1:144:91,53:91:3247:53:1882:-37.0428,0,-144.463	0/1:98:43,55:43:1544:55:1891:-42.3558,0,-46.8307	0/1:157:79,78:79:2798:78:2770:-32.8771,0,-203.056	0/1:120:61,59:61:2184:59:2102:-26.5535,0,-158.516	0/1:85:36,49:36:1292:49:1723:-27.3745,0,-89.9068	0/1:166:70,96:70:2512:96:3422:-93.8825,0,-86.3625	0/1:204:96,108:96:3452:108:3822:-74.7251,0,-235.304	0/1:173:95,78:95:3408:78:2758:-59.7174,0,-169.694	0/1:97:43,54:43:1539:54:1940:-52.3398,0,-82.6669	0/1:113:58,55:58:2065:55:1938:-34.8819,0,-150.852	0/1:76:27,49:27:972:49:1723:-38.3314,0,-59.9982	0/1:338:164,174:164:5892:174:6174:-149.267,0,-278.911	0/1:275:139,136:139:4976:136:4791:-87.2904,0,-352.392	0/1:81:51,30:51:1827:30:1059:-12.2917,0,-134.994	0/1:245:115,130:115:4128:130:4621:-114.068,0,-137.671	0/1:218:94,124:94:3384:124:4427:-90.346,0,-144.842	0/1:105:51,54:51:1836:54:1923:-50.999,0,-71.7871	1/1:5:0,5:0:0:5:176:-6.42431,-1.50515,0	0/1:7:2,5:2:72:5:171:-4.21287,0,-4.68231	.:.:.:.:.:.:.:.	0/1:7:1,6:1:36:6:207:-3.9279,0,-1.46622	1/1:5:0,5:0:0:5:176:-5.05244,-1.50515,0	0/1:501:281,220:281:10073:220:7724:-160.689,0,-359.379	0/1:221:97,124:97:3463:124:4388:-88.6489,0,-129.026	0/1:109:60,49:60:2148:49:1726:-15.7277,0,-159.469	0/0:3:3,0:3:108:0:0:0,-0.90309,-5.57219	0/1:267:108,159:108:3872:159:5608:-115.476,0,-264.553	0/1:72:34,38:34:1224:38:1337:-25.3154,0,-86.585	0/1:107:45,62:45:1612:62:2208:-45.2548,0,-66.8932	0/1:192:91,101:91:3238:101:3449:-90.368,0,-104.881	0/1:182:90,92:90:3185:92:3203:-81.2921,0,-123.266	0/1:184:85,99:85:3039:99:3521:-87.3571,0,-143.829	0/1:104:37,67:37:1328:67:2379:-37.0224,0,-87.7413	0/1:167:95,72:95:3391:72:2479:-58.7795,0,-193.629	0/1:145:65,80:65:2328:80:2845:-77.3154,0,-82.7744	0/1:114:52,62:52:1868:62:2209:-58.6705,0,-95.8176	0/1:92:19,73:19:676:73:2595:-78.8743,0,-13.06	0/1:5:2,3:2:72:3:108:-3.23994,0,-2.59672	0/0:192:144,48:144:5137:48:1720:0,-10.3159,-411.601	0/1:44:29,15:29:1035:15:528:-11.8577,0,-54.0752	0/1:9:2,7:2:68:7:252:-4.32265,0,-3.71526	0/1:120:40,80:40:1440:80:2830:-67.9168,0,-49.9173	0/1:54:16,38:16:576:38:1333:-39.2204,0,-25.3319	1/1:3:0,3:0:0:3:108:-4.4682,-0.90309,0	0/1:20:8,12:8:288:12:424:-11.3618,0,-5.07099	0/1:111:65,46:65:2336:46:1640:-23.8456,0,-96.5623	0/1:233:125,108:125:4480:108:3822:-91.3561,0,-249.141	0/1:6:1,5:1:36:5:167:-5.94957,0,-1.0149	0/1:245:126,119:126:4508:119:4212:-97.9154,0,-220.94	0/1:217:104,113:104:3736:113:4002:-104.973,0,-150.819	0/1:154:54,100:54:1940:100:3548:-78.6039,0,-82.3851	0/1:69:37,32:37:1328:32:1144:-28.0119,0,-74.1236	0/1:185:89,96:89:3180:96:3417:-87.7869,0,-130.66	0/1:213:52,161:52:1855:161:5776:-177.105,0,-24.0813	0/1:29:15,14:15:536:14:491:-8.99711,0,-16.1795	0/1:56:16,40:16:576:40:1407:-22.331,0,-34.42	0/1:153:74,78:74:2637:78:2736:-65.693,0,-91.6026	0/0:35:29,6:29:1032:6:216:0,-1.48786,-66.332	0/1:162:77,85:77:2752:85:3017:-34.8313,0,-197.363	0/1:97:19,78:19:680:78:2753:-47.8262,0,-29.8554	0/1:201:104,97:104:3723:97:3425:-59.9269,0,-267.722	0/1:141:90,51:90:3228:51:1824:-34.7775,0,-180.449	0/1:56:33,23:33:1169:23:813:-5.62349,0,-85.447	0/1:123:40,83:40:1432:83:2954:-45.3159,0,-90.4461	0/1:10:2,8:2:72:8:275:-7.19068,0,-3.77922	0/1:107:52,55:52:1868:55:1954:-36.1814,0,-135.037	0/1:157:66,91:66:2360:91:3237:-42.6115,0,-163.95	0/1:190:94,96:94:3368:96:3415:-88.1583,0,-127.349	0/1:242:118,124:118:4240:124:4345:-113.567,0,-226.25	0/1:114:55,59:55:1972:59:2068:-56.5179,0,-107.279	0/1:182:100,82:100:3592:82:2862:-68.5915,0,-203.572	0/1:359:202,157:202:7201:157:5525:-127.678,0,-276.09	0/1:58:23,35:23:824:35:1195:-16.8914,0,-55.9834	0/1:119:44,75:44:1567:75:2636:-38.835,0,-104.494	0/1:157:68,89:68:2444:89:3108:-40.1482,0,-169.907	0/1:62:29,33:29:1035:33:1172:-23.6657,0,-48.4191	0/1:161:84,77:84:3008:77:2665:-45.5379,0,-141.055	0/1:169:93,76:93:3319:76:2686:-63.3645,0,-112.578	0/1:100:49,51:49:1760:51:1816:-48.8215,0,-94.9409	0/1:249:137,112:137:4906:112:3933:-93.044,0,-268.521
chr02	23322726	.	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chr02	23390722	.	T	A	14078	PASS	AB=0.315542;ABP=756.037;AC=67;AF=0.356383;AN=188;AO=848;CIGAR=1X;DP=4323;DPB=4323;DPRA=1.31644;EPP=143.224;EPPR=1531.98;GTI=17;LEN=1;MEANALT=1.01149;MQM=54.4009;MQMR=51.0409;NS=94;NUMALT=1;ODDS=0.102297;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30324;QR=124361;RO=3474;RPL=541;RPP=143.224;RPPR=7546.71;RPR=307;RUN=1;SAF=0;SAP=1844.42;SAR=848;SRF=955;SRP=1531.98;SRR=2519;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:17,1:17:612:1:36:0,-1.82026,-51.2045	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.7299	0/1:51:45,6:45:1620:6:212:-4.07227,0,-129.678	0/1:50:35,15:35:1260:15:531:-32.2739,0,-96.2531	0/1:18:14,4:14:504:4:140:-7.52604,0,-39.8107	0/1:25:19,6:19:680:6:216:-12.2648,0,-53.0229	0/1:52:46,6:46:1648:6:216:-3.79512,0,-132.744	0/1:46:28,18:28:1008:18:648:-44.8045,0,-76.0281	0/1:27:23,4:23:828:4:144:-5.18581,0,-66.0489	0/1:12:6,6:6:212:6:216:-15.8363,0,-15.7425	0/0:40:38,2:38:1368:2:72:0,-5.32257,-115.125	0/0:87:86,1:86:3076:1:36:0,-22.5913,-271.513	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.75136	0/0:100:99,1:99:3543:1:36:0,-26.5047,-314.441	0/0:79:78,1:78:2800:1:36:0,-20.2452,-248.288	0/0:92:89,3:89:3188:3:108:0,-17.6196,-276.161	0/1:13:10,3:10:360:3:104:-5.78942,0,-28.5936	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.4063	0/1:13:8,5:8:288:5:180:-12.6387,0,-21.7365	0/1:39:35,4:35:1245:4:144:-0.603559,0,-100.427	0/1:18:14,4:14:504:4:144:-7.89508,0,-39.9065	0/1:11:2,9:2:72:9:324:-25.9086,0,-3.16728	0/1:17:8,9:8:288:9:324:-23.9353,0,-20.7968	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.5508	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0164	0/1:13:7,6:7:252:6:216:-15.7041,0,-19.0201	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.7939	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.3802	0/1:33:29,4:29:1044:4:144:-3.23483,0,-84.1602	0/1:30:23,7:23:813:7:252:-13.9981,0,-63.8632	0/1:56:47,9:47:1664:9:320:-11.9213,0,-131.432	0/1:90:55,35:55:1946:35:1252:-85.5216,0,-146.478	0/1:109:67,42:67:2404:42:1503:-102.752,0,-181.506	0/1:101:65,36:65:2332:36:1296:-86.5399,0,-177.294	0/1:187:127,60:127:4556:60:2129:-135.151,0,-350.09	0/1:98:68,30:68:2448:30:1039:-64.3148,0,-189.173	0/0:190:189,1:189:6773:1:36:0,-53.6289,-603.974	0/1:19:14,5:14:500:5:180:-10.8325,0,-39.5307	0/1:34:30,4:30:1080:4:144:-3.03264,0,-85.3278	0/1:67:40,27:40:1440:27:972:-67.6255,0,-107.858	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.87385	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.6981	0/1:56:41,15:41:1476:15:540:-32.0789,0,-114.819	0/0:143:141,2:141:5068:2:68:0,-36.6732,-448.275	0/0:73:67,6:67:2377:6:212:0,-2.85897,-194.814	0/1:17:7,10:7:252:10:351:-26.5198,0,-17.7525	0/1:41:30,11:30:1076:11:396:-23.6405,0,-84.3496	0/0:53:49,4:49:1760:4:144:0,-2.87093,-145.145	0/0:34:33,1:33:1184:1:27:0,-7.54358,-103.892	0/1:20:11,9:11:396:9:324:-23.0289,0,-29.5622	0/1:30:26,4:26:932:4:144:-4.16631,0,-74.9341	0/1:126:77,49:77:2772:49:1764:-117.645,0,-206.943	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.0859	0/1:19:2,17:2:72:17:608:-48.8771,0,-1.02015	0/1:122:70,51:70:2520:51:1832:-128.376,0,-187.861	0/1:53:37,16:37:1323:16:576:-36.2204,0,-102.61	0/1:3:2,1:2:72:1:36:-2.63303,0,-5.85828	0/1:108:61,47:61:2188:47:1680:-116.988,0,-163.15	0/1:24:18,6:18:648:6:216:-12.3927,0,-50.3258	0/1:32:24,8:24:856:8:284:-16.2704,0,-67.3687	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1658	0/1:45:22,23:22:792:23:828:-60.0612,0,-57.2701	0/1:6:4,2:4:129:2:72:-4.97076,0,-9.77118	0/0:61:56,5:56:1996:5:180:0,-2.09666,-163.008	0/1:22:17,5:17:608:5:180:-9.9294,0,-48.2342	0/1:23:12,11:12:428:11:387:-27.7337,0,-31.5272	0/0:64:61,3:61:2179:3:108:0,-9.36477,-184.772	0/1:67:58,9:58:2030:9:313:-6.36635,0,-162.196	0/1:49:44,5:44:1539:5:180:-1.8016,0,-122.496	0/1:32:26,6:26:932:6:212:-9.79184,0,-73.8413	0/0:123:121,2:121:4324:2:72:0,-30.2497,-381.728	0/1:30:25,5:25:892:5:180:-7.23527,0,-69.9274	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.6012	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.8194	0/1:28:16,12:16:576:12:432:-30.7924,0,-42.2529	0/1:27:15,12:15:536:12:432:-30.4724,0,-39.9743	0/0:35:33,2:33:1172:2:72:0,-3.69933,-98.2022	0/0:31:30,1:30:1080:1:36:0,-5.73365,-93.5339	0/1:63:42,21:42:1504:21:756:-49.4023,0,-114.832	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.1996	0/1:44:35,9:35:1251:9:320:-15.897,0,-98.4691	0/0:50:47,3:47:1688:3:108:0,-5.15036,-139.368	0/1:6:2,4:2:68:4:144:-11.3925,0,-4.63124	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.9711	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.1713	0/0:164:164,0:164:5850:0:0:0,-49.3689,-525.309	0/0:43:43,0:43:1540:0:0:0,-12.9443,-137.865	0/1:76:69,7:69:2472:7:252:-0.150681,0,-198.484	0/1:9:6,3:6:207:3:108:-7.3659,0,-16.191	0/0:75:72,3:72:2576:3:108:0,-12.5021,-220.597	0/0:74:73,1:73:2616:1:36:0,-18.6779,-230.875	0/0:104:103,1:103:3704:1:36:0,-27.771,-329.51	0/1:7:4,3:4:144:3:108:-7.79393,0,-11.0964	0/1:18:14,4:14:504:4:144:-7.66511,0,-39.9959
chr02	23419450	.	T	A	622006	PASS	AB=0.620963;ABP=821.481;AC=156;AF=0.829787;AN=188;AO=27900;CIGAR=1X;DP=30429;DPB=30429;DPRA=0;EPP=60587.1;EPPR=5425.18;GTI=4;LEN=1;MEANALT=1.2234;MQM=59.9933;MQMR=59.9864;NS=94;NUMALT=1;ODDS=14.9995;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=993259;QR=89351;RO=2497;RPL=98;RPP=59738.9;RPPR=4867.06;RPR=27802;RUN=1;SAF=98;SAP=59738.9;SAR=27802;SRF=66;SRP=4867.06;SRR=2431;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53:0:0:53:1881:-169.567,-15.9546,0	1/1:432:0,432:0:0:432:15375:-1383.47,-130.045,0	1/1:60:0,60:0:0:60:2144:-193.226,-18.0618,0	1/1:205:0,205:0:0:205:7248:-652.374,-61.7112,0	0/1:95:52,41:52:1864:41:1458:-103.159,0,-139.684	0/1:43:6,37:6:207:37:1314:-105.616,0,-6.0226	0/1:186:75,111:75:2692:111:3945:-299.248,0,-186.533	1/1:114:4,109:4:144:109:3893:-337.249,-21.0626,0	1/1:110:0,110:0:0:110:3921:-353.083,-33.1133,0	1/1:165:0,165:0:0:165:5831:-524.907,-49.67,0	1/1:1235:1,1233:1:32:1233:43730:-3931.04,-368.612,0	1/1:55:0,55:0:0:55:1946:-175.415,-16.5567,0	1/1:134:0,134:0:0:134:4773:-429.728,-40.338,0	0/1:240:106,133:106:3800:133:4742:-354.633,0,-269.892	0/1:95:38,57:38:1364:57:2015:-153.022,0,-94.4629	0/1:89:32,57:32:1136:57:2036:-156.721,0,-75.7572	1/1:132:0,132:0:0:132:4665:-420.014,-39.736,0	1/1:113:0,113:0:0:113:4020:-361.989,-34.0164,0	1/1:474:0,473:0:0:473:16847:-1515.67,-142.387,0	0/1:294:117,177:117:4191:177:6293:-477.962,0,-288.868	1/1:258:1,257:1:36:257:9170:-821.674,-74.0675,0	1/1:124:0,124:0:0:124:4406:-396.713,-37.3277,0	1/1:59:1,58:1:36:58:2041:-180.36,-14.1625,0	1/1:80:0,80:0:0:80:2839:-255.747,-24.0824,0	1/1:103:0,103:0:0:103:3642:-327.984,-31.0061,0	1/1:476:1,475:1:32:475:16928:-1520.38,-140.503,0	1/1:327:0,327:0:0:327:11648:-1048.19,-98.4368,0	1/1:45:0,44:0:0:44:1543:-138.799,-13.2453,0	0/1:342:171,169:171:6125:169:6051:-441.983,0,-448.638	0/1:184:65,119:65:2327:119:4253:-327.558,0,-154.3	0/1:142:54,87:54:1908:87:3100:-236.46,0,-129.229	1/1:1424:1,1422:1:36:1422:50675:-4555.37,-425.127,0	1/1:1833:1,1831:1:36:1831:65312:-5872.1,-548.249,0	1/1:1245:1,1244:1:36:1244:44283:-3980.35,-371.184,0	1/1:3553:1,3549:1:36:3549:126590:-11384.2,-1065.4,0	1/1:927:1,926:1:36:926:32965:-2962.24,-275.457,0	0/1:275:110,165:110:3935:165:5879:-446.437,0,-271.559	0/1:227:101,126:101:3602:126:4508:-337.555,0,-256.052	1/1:763:0,763:0:0:763:27114:-2439.49,-229.686,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:177:0,177:0:0:177:6344:-571.049,-53.2823,0	1/1:333:0,333:0:0:333:11827:-1064.3,-100.243,0	0/1:156:41,115:41:1467:115:4104:-322.584,0,-85.3647	0/1:91:44,46:44:1576:46:1629:-119.444,0,-114.679	0/1:72:28,44:28:1008:44:1559:-118.927,0,-69.3622	1/1:109:0,109:0:0:109:3899:-351.103,-32.8123,0	1/1:89:0,89:0:0:89:3161:-284.713,-26.7917,0	0/1:190:62,128:62:2206:128:4604:-357.326,0,-141.608	0/1:130:60,70:60:2148:70:2470:-183.418,0,-154.454	1/1:234:0,234:0:0:234:8298:-746.832,-70.441,0	0/1:224:118,106:118:4220:106:3752:-270.449,0,-312.55	1/1:923:16,907:16:576:907:32307:-2854.46,-225.676,0	1/1:199:0,199:0:0:199:7053:-634.832,-59.905,0	1/1:64:0,64:0:0:64:2274:-204.921,-19.2659,0	1/1:403:0,398:0:0:398:14157:-1273.54,-119.81,0	0/1:166:54,112:54:1925:112:3997:-309.947,0,-123.554	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:415:8,407:8:288:407:14465:-1275.33,-98.66,0	1/1:730:18,712:18:648:712:25382:-2225.02,-161.1,0	0/1:166:81,85:81:2912:85:3048:-224.578,0,-212.344	1/1:205:3,202:3:108:202:7167:-635.012,-51.636,0	1/1:832:0,831:0:0:831:29643:-2666.63,-250.156,0	1/1:110:0,110:0:0:110:3917:-352.721,-33.1133,0	0/1:229:105,124:105:3747:124:4448:-331.554,0,-268.495	0/1:144:67,77:67:2404:77:2743:-203.764,0,-173.268	1/1:121:0,121:0:0:121:4314:-388.436,-36.4246,0	0/1:198:106,92:106:3808:92:3255:-233.567,0,-283.312	0/1:174:115,59:115:4120:59:2112:-137.969,0,-318.603	0/1:250:42,208:42:1504:208:7399:-590.702,0,-60.3971	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:161:65,95:65:2327:95:3359:-254.002,0,-161.165	1/1:913:1,912:1:36:912:32446:-2915.55,-271.242,0	1/1:238:0,238:0:0:238:8431:-758.798,-71.6451,0	1/1:62:0,62:0:0:62:2201:-198.354,-18.6639,0	1/1:250:0,250:0:0:250:8911:-801.974,-75.2575,0	1/1:186:1,185:1:36:185:6599:-590.392,-52.3933,0	1/1:116:6,110:6:216:110:3874:-329.064,-15.129,0	1/1:66:0,66:0:0:66:2354:-212.118,-19.868,0	1/1:1686:0,1682:0:0:1682:59870:-5385.74,-506.332,0	1/1:167:0,167:0:0:167:5929:-533.72,-50.272,0	1/1:73:1,71:1:36:71:2539:-225.162,-18.4357,0	0/1:226:108,118:108:3863:118:4199:-310.058,0,-279.832	1/1:165:0,165:0:0:165:5892:-530.389,-49.67,0	1/1:123:0,123:0:0:123:4376:-394.014,-37.0267,0	1/1:127:0,127:0:0:127:4529:-407.777,-38.2308,0	0/1:173:78,94:78:2796:94:3332:-247.961,0,-199.743	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:51:0,51:0:0:51:1811:-163.271,-15.3525,0	1/1:102:0,102:0:0:102:3634:-327.265,-30.7051,0	0/1:1036:120,914:120:4282:914:32498:-2612.24,0,-73.9722	0/1:337:149,187:149:5344:187:6632:-495.455,0,-379.586	0/1:91:51,40:51:1815:40:1415:-100.253,0,-136.237	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:106:1,105:1:36:105:3732:-332.482,-28.3109,0
chr02	23419492	.	C	T	38566	PASS	AB=0.381998;ABP=955.702;AC=43;AF=0.228723;AN=188;AO=3091;CIGAR=1X;DP=31746;DPB=31746;DPRA=1.28726;EPP=6663.02;EPPR=57499.8;GTI=4;LEN=1;MEANALT=1.10909;MQM=59.9922;MQMR=59.9864;NS=94;NUMALT=1;ODDS=0.782862;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110544;QR=1022447;RO=28636;RPL=3085;RPP=6663.02;RPPR=57508.2;RPR=6;RUN=1;SAF=0;SAP=6715.03;SAR=3091;SRF=1;SRP=62176.6;SRR=28635;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.044	0/0:441:441,0:441:15778:0:0:0,-132.754,-1419.7	0/1:118:60,58:60:2148:58:2065:-150.598,0,-158.066	0/0:208:208,0:208:7396:0:0:0,-62.6142,-665.686	0/1:68:34,34:34:1208:34:1209:-88.6441,0,-88.556	0/1:60:32,28:32:1144:28:1008:-72.9746,0,-85.2077	0/1:187:111,76:111:3928:76:2724:-189.11,0,-297.422	0/1:186:104,82:104:3712:82:2903:-205.507,0,-278.291	0/0:107:107,0:107:3777:0:0:0,-32.2102,-340.132	0/0:171:170,0:170:6051:0:0:0,-51.1751,-544.332	0/0:1289:1288,1:1288:46006:1:36:0,-384.429,-4135.37	0/1:106:57,49:57:2036:49:1760:-126.775,0,-151.603	0/0:144:144,0:144:5132:0:0:0,-43.3483,-462.022	0/1:269:156,113:156:5584:113:4039:-282.721,0,-421.706	0/1:96:58,38:58:2084:38:1364:-94.1618,0,-158.931	0/1:94:61,33:61:2170:33:1184:-78.5715,0,-167.264	0/0:145:145,0:145:5207:0:0:0,-43.6493,-468.766	0/0:130:129,0:129:4610:0:0:0,-38.8329,-414.704	0/0:486:486,0:486:17407:0:0:0,-146.301,-1566.25	0/1:292:175,117:175:6264:117:4204:-290.639,0,-475.954	0/0:266:265,0:265:9423:0:0:0,-79.7729,-847.65	0/0:119:118,0:118:4209:0:0:0,-35.5215,-378.631	0/0:62:61,1:61:2184:1:36:0,-15.0656,-193.228	0/0:80:80,0:80:2841:0:0:0,-24.0824,-255.925	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.168	0/0:478:477,0:477:17035:0:0:0,-143.591,-1532.06	0/0:325:325,0:325:11628:0:0:0,-97.8347,-1046.39	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.39	0/1:342:171,171:171:6118:171:6094:-445.608,0,-447.765	0/1:189:124,65:124:4429:65:2336:-153.605,0,-341.886	0/1:142:90,52:90:3156:52:1872:-126.013,0,-241.516	0/0:1441:1440,0:1440:51499:0:0:0,-433.483,-4632.72	0/0:1832:1831,1:1831:65440:1:36:0,-547.889,-5883.6	0/0:1257:1255,1:1255:44785:1:36:0,-374.855,-4025.3	0/0:3597:3595,1:3595:128283:1:36:0,-1079.22,-11536.6	0/0:964:940,24:940:33574:24:860:0,-212.471,-2942.89	0/1:281:173,108:173:6187:108:3880:-264.804,0,-472.338	0/1:226:126,99:126:4464:99:3531:-249.906,0,-333.799	0/0:779:778,0:778:27775:0:0:0,-234.201,-2498.52	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:180:180,0:180:6452:0:0:0,-54.1854,-580.765	0/0:340:340,0:340:12165:0:0:0,-102.35,-1094.7	0/1:157:117,40:117:4188:40:1421:-80.9237,0,-329.84	0/1:99:55,44:55:1968:44:1553:-110.258,0,-147.593	0/1:76:48,28:48:1707:28:1008:-68.1581,0,-131.037	0/0:106:106,0:106:3758:0:0:0,-31.9092,-338.419	0/1:149:86,62:86:3080:62:2224:-155.512,0,-232.516	0/1:189:128,61:128:4561:61:2169:-138.58,0,-353.762	0/1:130:70,60:70:2500:60:2139:-153.643,0,-186.119	0/0:232:232,0:232:8278:0:0:0,-69.839,-745.03	0/1:228:109,119:109:3885:119:4253:-314.313,0,-281.209	0/0:939:923,16:923:33027:16:576:0,-230.492,-2918.9	0/0:197:197,0:197:7056:0:0:0,-59.3029,-635.101	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.952	0/0:406:399,7:399:14213:7:252:0,-99.1892,-1255.9	0/1:170:114,56:114:4077:56:2011:-130.088,0,-315.94	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:420:411,9:411:14679:9:320:0,-97.2902,-1291.7	0/0:736:717,18:717:25478:18:648:0,-162.965,-2233.67	0/1:169:87,82:87:3128:82:2940:-213.96,0,-230.871	0/0:247:245,2:245:8709:2:72:0,-67.5177,-776.967	0/0:844:843,1:843:30111:1:36:0,-250.471,-2705.49	0/0:193:192,0:192:6853:0:0:0,-57.7978,-616.421	0/1:232:125,107:125:4496:107:3840:-275.956,0,-334.967	0/1:149:79,70:79:2821:70:2491:-179.59,0,-209.274	0/0:125:123,0:123:4344:0:0:0,-37.0267,-390.848	0/1:197:92,105:92:3281:105:3772:-280.375,0,-236.206	0/1:176:61,115:61:2168:115:4099:-316.113,0,-142.406	0/1:253:209,44:209:7472:44:1574:-65.7911,0,-596.362	0/1:104:50,54:50:1792:54:1936:-143.209,0,-130.255	0/1:174:107,67:107:3828:67:2404:-164.237,0,-292.338	0/0:920:920,0:920:32784:0:0:0,-276.948,-2949.54	0/0:237:236,0:236:8402:0:0:0,-71.0431,-755.828	0/1:112:65,47:65:2321:47:1684:-118.132,0,-175.433	0/0:254:254,0:254:9041:0:0:0,-76.4616,-813.673	0/0:185:185,0:185:6598:0:0:0,-55.6905,-593.9	0/1:143:99,44:99:3533:44:1571:-98.6342,0,-275.131	0/1:108:67,40:67:2400:40:1421:-95.6155,0,-183.687	0/0:1708:1707,0:1707:61028:0:0:0,-513.858,-5489.89	0/0:164:163,0:163:5820:0:0:0,-49.0679,-523.632	0/1:127:67,60:67:2377:60:2127:-153.465,0,-175.956	0/1:219:112,107:112:4008:107:3821:-278.16,0,-294.984	0/0:182:182,0:182:6513:0:0:0,-54.7875,-586.252	0/0:144:144,0:144:5140:0:0:0,-43.3483,-462.743	0/0:142:142,0:142:5075:0:0:0,-42.7463,-456.895	0/1:188:109,79:109:3903:79:2813:-196.815,0,-294.867	0/1:44:30,14:30:1067:14:504:-32.4528,0,-83.0959	0/1:121:72,49:72:2575:49:1756:-121.899,0,-195.574	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.624	0/1:1059:937,122:937:33545:122:4370:-74.6831,0,-2699.19	0/1:342:192,150:192:6858:150:5378:-381.198,0,-514.338	0/1:92:41,51:41:1438:51:1824:-136.746,0,-102.017	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.148	0/0:155:155,0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chr02	23419501	.	C	T	674211	PASS	AB=0.625171;ABP=1095.13;AC=145;AF=0.771277;AN=188;AO=28932;CIGAR=1X;DP=32167;DPB=32167;DPRA=0;EPP=57408.7;EPPR=6617.34;GTI=5;LEN=1;MEANALT=1.48936;MQM=59.8051;MQMR=59.9908;NS=94;NUMALT=1;ODDS=2.15969;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1034381;QR=109188;RO=3058;RPL=27989;RPP=54904.2;RPPR=6617.34;RPR=943;RUN=1;SAF=307;SAP=60189.8;SAR=28625;SRF=0;SRP=6643.37;SRR=3058;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62:0:0:62:2193:-196.968,-18.6639,0	1/1:438:0,433:0:0:433:15351:-1380.92,-130.346,0	0/1:125:59,66:59:2097:66:2364:-175.248,0,-151.369	1/1:217:0,217:0:0:217:7755:-697.765,-65.3235,0	0/1:71:34,37:34:1201:37:1328:-98.3923,0,-87.0205	0/1:58:27,31:27:972:31:1116:-83.2635,0,-70.3382	0/1:188:77,111:77:2760:111:3950:-299.011,0,-192.048	0/1:190:82,108:82:2921:108:3853:-289.713,0,-205.892	1/1:119:0,119:0:0:119:4244:-381.335,-35.8226,0	1/1:172:0,172:0:0:172:6127:-551.517,-51.7772,0	1/1:1306:0,1296:0:0:1296:46508:-4183.63,-390.135,0	0/1:114:49,65:49:1752:65:2340:-176.271,0,-123.647	1/1:171:0,169:0:0:169:6043:-542.459,-50.8741,0	0/1:275:111,164:111:3968:164:5896:-447.273,0,-274.528	0/1:101:38,62:38:1364:62:2228:-170.203,0,-92.5933	0/1:104:32,72:32:1144:72:2588:-201.54,0,-71.9624	1/1:169:0,169:0:0:169:5991:-538.05,-50.8741,0	1/1:135:0,134:0:0:134:4804:-432.081,-40.338,0	1/1:500:0,489:0:0:489:17530:-1576.14,-147.204,0	0/1:291:114,177:114:4080:177:6328:-481.94,0,-279.787	1/1:267:0,266:0:0:266:9490:-853.536,-80.074,0	1/1:119:0,119:0:0:119:4280:-385.319,-35.8226,0	1/1:61:1,60:1:36:60:2122:-187.619,-14.7646,0	1/1:84:0,84:0:0:84:3016:-271.582,-25.2865,0	1/1:103:0,103:0:0:103:3685:-331.733,-31.0061,0	1/1:480:0,479:0:0:479:17115:-1539.54,-144.193,0	1/1:334:0,334:0:0:334:11950:-1075.14,-100.544,0	1/1:60:0,59:0:0:59:2105:-189.164,-17.7608,0	0/1:343:172,171:172:6137:171:6110:-446.688,0,-449.177	0/1:191:65,126:65:2336:126:4493:-347.014,0,-153.003	0/1:148:53,94:53:1900:94:3384:-260.106,0,-126.667	1/1:1454:0,1452:0:0:1452:51930:-4671.48,-437.096,0	1/1:1843:0,1835:0:0:1835:65419:-5884.93,-552.39,0	1/1:1254:0,1247:0:0:1247:44588:-4010.6,-375.384,0	1/1:3555:0,3528:0:0:3528:125606:-11298.8,-1062.03,0	1/1:947:25,919:25:885:919:32948:-2884.32,-204.565,0	0/1:292:108,184:108:3868:184:6592:-505.212,0,-260.414	0/1:224:98,126:98:3481:126:4524:-339.282,0,-246.071	1/1:802:0,794:0:0:794:28357:-2550.7,-239.018,0	0/1:15:9,6:9:316:6:216:-15.2751,0,-24.2634	1/1:187:0,186:0:0:186:6676:-600.392,-55.9916,0	1/1:345:0,342:0:0:342:12272:-1103.77,-102.952,0	0/1:157:39,118:39:1396:118:4240:-334.516,0,-78.6774	0/1:104:45,58:45:1612:58:2076:-155.66,0,-114.004	0/1:78:28,48:28:1008:48:1696:-129.683,0,-67.7982	1/1:110:0,110:0:0:110:3948:-355.454,-33.1133,0	0/1:153:63,90:63:2252:90:3213:-243.277,0,-156.886	0/1:193:61,132:61:2169:132:4728:-367.523,0,-137.376	0/1:132:60,72:60:2140:72:2592:-193.764,0,-153.132	1/1:240:0,239:0:0:239:8543:-767.873,-71.9462,0	0/1:227:117,110:117:4154:110:3948:-287.12,0,-305.709	1/1:933:14,912:14:500:912:32669:-2893.53,-233.776,0	1/1:205:0,203:0:0:203:7285:-655.28,-61.1091,0	1/1:66:0,66:0:0:66:2364:-212.978,-19.868,0	1/1:410:7,400:7:252:400:14275:-1261.48,-99.8501,0	0/1:170:55,115:55:1957:115:4132:-320.859,0,-125.229	1/1:31:0,31:0:0:31:1116:-100.723,-9.33193,0	1/1:427:9,413:9:320:413:14773:-1300.16,-98.2454,0	1/1:741:18,716:18:640:716:25678:-2252.36,-163.385,0	0/1:169:81,88:81:2896:88:3148:-232.643,0,-210.002	1/1:262:3,257:3:108:257:9198:-817.286,-68.5525,0	1/1:852:0,852:0:0:852:30473:-2741.64,-256.478,0	1/1:194:0,194:0:0:194:6956:-626.015,-58.3998,0	0/1:239:105,134:105:3760:134:4789:-359.123,0,-266.653	0/1:155:71,84:71:2536:84:2985:-222.166,0,-181.832	1/1:127:0,127:0:0:127:4556:-410.139,-38.2308,0	0/1:202:105,96:105:3768:96:3425:-247.511,0,-278.452	0/1:175:115,60:115:4092:60:2133:-139.556,0,-315.786	0/1:257:43,212:43:1521:212:7609:-607.648,0,-60.078	0/1:103:51,52:51:1824:52:1856:-136.314,0,-133.435	0/1:179:64,114:64:2288:114:4077:-312.997,0,-152.239	1/1:933:0,921:0:0:921:32962:-2965.17,-277.249,0	1/1:238:0,238:0:0:238:8520:-766.8,-71.6451,0	0/1:115:48,67:48:1724:67:2385:-180.231,0,-120.827	1/1:262:0,260:0:0:260:9292:-835.794,-78.2678,0	1/1:194:0,194:0:0:194:6941:-624.534,-58.3998,0	0/1:147:42,105:42:1500:105:3756:-293.875,0,-91.0432	0/1:111:40,69:40:1436:69:2476:-189.78,0,-96.3656	1/1:1692:0,1686:0:0:1686:60224:-5417.62,-507.537,0	1/1:171:0,170:0:0:170:6101:-548.686,-51.1751,0	0/1:130:60,70:60:2133:70:2516:-187.501,0,-153.103	0/1:222:105,116:105:3739:116:4160:-307.666,0,-269.824	1/1:193:0,190:0:0:190:6817:-612.868,-57.1957,0	1/1:149:0,144:0:0:144:5168:-464.649,-43.3483,0	1/1:164:0,164:0:0:164:5859:-526.271,-49.3689,0	0/1:198:81,114:81:2892:114:4073:-307.434,0,-201.456	0/1:44:11,31:11:396:31:1104:-86.5302,0,-22.9797	0/1:120:47,72:47:1684:72:2548:-193.265,0,-115.665	1/1:126:0,124:0:0:124:4429:-398.162,-37.3277,0	0/1:1070:118,947:118:4215:947:34004:-2737.88,0,-58.5741	0/1:351:148,200:148:5279:200:7157:-538.886,0,-370.126	0/1:94:50,43:50:1779:43:1544:-110.779,0,-132.037	1/1:77:0,77:0:0:77:2732:-246.083,-23.1793,0	1/1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chr02	23480468	.	GATT	CATT,CGTT	218380	PASS	AB=0.434813,0.560028;ABP=217.604,184.976;AC=140,46;AF=0.752688,0.247312;AN=186;AO=7041,3264;CIGAR=1X3M,2X2M;DP=10352;DPB=10352;DPRA=0,1.37829;EPP=15292.3,7090.7;EPPR=5.18177;GTI=6;LEN=1,2;MEANALT=2.02151,2.53846;MQM=59.9841,59.549;MQMR=60;NS=93;NUMALT=2;ODDS=0.717609;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=251559,115173;QR=36;RO=1;RPL=0,0;RPP=15292.3,7090.7;RPPR=5.18177;RPR=7041,3264;RUN=1,1;SAF=7041,3264;SAP=15292.3,7090.7;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,36,0:0:0:36,0:1269,0:-114.209,-10.8371,0,-114.209,-10.8371,-114.209	1/1:235:0,234,1:0:0:234,1:8380,34:-753.861,-70.441,0,-751.103,-67.3431,-750.802	1/2:167:0,74,92:0:0:74,92:2641,3248:-479.829,-264.525,-242.249,-215.358,0,-187.664	1/1:301:0,300,0:0:0:300,0:10706,0:-963.089,-90.309,0,-963.089,-90.309,-963.089	1/2:95:0,38,56:0:0:38,56:1359,1982:-272.37,-161.554,-150.114,-110.938,0,-94.0804	1/2:45:0,15,30:0:0:15,30:536,1078:-131.797,-88.0956,-83.5802,-44.0594,0,-35.0285	1/2:153:0,59,93:0:0:59,93:2114,3295:-440.776,-268.365,-250.604,-172.428,0,-144.432	1/2:223:0,69,153:0:0:69,153:2464,5280:-629.633,-428.743,-407.972,-200.884,0,-154.826	1/1:55:1,54,0:1:36:54,0:1928,0:-170.19,-12.9584,0,-170.491,-16.2556,-173.429	1/1:90:0,90,0:0:0:90,0:3224,0:-290.377,-27.0927,0,-290.377,-27.0927,-290.377	1/1:43:0,43,0:0:0:43,0:1536,0:-138.533,-12.9443,0,-138.533,-12.9443,-138.533	1/2:61:0,34,27:0:0:34,27:1224,917:-174.589,-74.705,-64.47,-100.232,0,-92.1042	1/1:66:0,66,0:0:0:66,0:2353,0:-212.028,-19.868,0,-212.028,-19.868,-212.028	1/2:80:0,35,45:0:0:35,45:1256,1598:-232.85,-130.398,-119.862,-102.809,0,-89.2629	1/2:59:0,28,30:0:0:28,30:1008,1075:-169.919,-87.6703,-79.2415,-82.2483,0,-73.2174	1/2:58:0,29,28:0:0:29,28:1044,978:-164.724,-79.5338,-70.8039,-85.1856,0,-76.7568	1/1:63:0,62,1:0:0:62,1:2227,36:-200.334,-18.6639,0,-197.397,-15.3666,-197.096	1/1:63:0,63,0:0:0:63,0:2268,0:-204.382,-18.9649,0,-204.382,-18.9649,-204.382	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:128:0,64,63:0:0:64,63:2300,2228:-369.106,-181.467,-162.201,-187.645,0,-168.68	1/1:133:0,132,0:0:0:132,0:4736,0:-426.117,-39.736,0,-426.117,-39.736,-426.117	1/1:169:0,169,0:0:0:169,0:6024,0:-542.265,-50.8741,0,-542.265,-50.8741,-542.265	1/1:44:0,43,1:0:0:43,1:1535,25:-138.19,-12.9443,0,-136.244,-10.7455,-135.942	1/1:118:0,118,0:0:0:118,0:4211,0:-379.171,-35.5215,0,-379.171,-35.5215,-379.171	1/1:89:0,86,2:0:0:86,2:3080,72:-277.068,-25.8886,0,-271.194,-20.0137,-270.591	1/1:329:0,327,0:0:0:327,0:11713,0:-1053.67,-98.4368,0,-1053.67,-98.4368,-1053.67	1/1:255:0,254,0:0:0:254,0:9074,0:-816.268,-76.4616,0,-816.268,-76.4616,-816.268	1/1:36:0,36,0:0:0:36,0:1288,0:-116.224,-10.8371,0,-116.224,-10.8371,-116.224	1/2:384:0,190,191:0:0:190,191:6770,6831:-1108.84,-557.019,-499.823,-551.845,0,-494.349	1/2:195:0,100,93:0:0:100,93:3584,3297:-560.921,-268.615,-238.512,-292.337,0,-264.341	1/2:112:0,48,63:0:0:48,63:1720,2228:-321.847,-181.566,-167.117,-140.403,0,-121.439	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:16:0,10,3:0:0:10,3:360,108:-38.1898,-8.81433,-5.80403,-29.3774,0,-28.4743	1/2:197:0,79,117:0:0:79,117:2831,4137:-567.853,-336.963,-313.182,-230.975,0,-195.755	1/2:284:0,130,152:0:0:130,152:4648,5392:-817.757,-438.763,-399.629,-379.009,0,-333.252	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:180:0,180,0:0:0:180,0:6444,0:-580.047,-54.1854,0,-580.047,-54.1854,-580.047	1/1:23:0,23,0:0:0:23,0:816,0:-73.7617,-6.92369,0,-73.7617,-6.92369,-73.7617	1/2:212:0,90,121:0:0:90,121:3228,4339:-617.169,-353.882,-326.79,-263.373,0,-226.949	1/2:60:0,29,31:0:0:29,31:1040,1106:-175.074,-90.2467,-81.5168,-85.1845,0,-75.8526	1/2:39:0,20,19:0:0:20,19:677,611:-104.398,-49.5031,-43.4825,-55.2245,0,-49.505	1/1:83:0,83,0:0:0:83,0:2979,0:-268.342,-24.9855,0,-268.342,-24.9855,-268.342	1/2:160:0,78,82:0:0:78,82:2765,2886:-460.531,-235.271,-211.791,-225.613,0,-200.928	1/2:215:0,94,121:0:0:94,121:3346,4256:-618.956,-346.519,-318.222,-272.791,0,-236.366	1/2:159:0,69,89:0:0:69,89:2472,3147:-457.87,-256.277,-235.506,-201.589,0,-174.797	1/1:159:0,158,0:0:0:158,0:5630,0:-506.46,-47.5627,0,-506.46,-47.5627,-506.46	1/2:235:0,97,137:0:0:97,137:3476,4810:-674.949,-391.453,-362.253,-283.492,0,-242.25	1/2:8:0,3,5:0:0:3,5:108,178:-23.6757,-14.862,-13.9589,-9.17208,0,-7.66693	1/1:195:0,194,0:0:0:194,0:6939,0:-624.216,-58.3998,0,-624.216,-58.3998,-624.216	1/1:59:0,59,0:0:0:59,0:2116,0:-190.709,-17.7608,0,-190.709,-17.7608,-190.709	1/2:15:0,11,4:0:0:11,4:396,142:-44.184,-11.8676,-8.55626,-32.6714,0,-31.4673	1/2:156:0,72,84:0:0:72,84:2543,2903:-443.29,-236.193,-214.519,-207.447,0,-182.16	1/1:26:0,26,0:0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chr02	23480514	.	C	G	54440.5	PASS	AB=0.563785;ABP=202.46;AC=46;AF=0.247312;AN=186;AO=3187;CIGAR=1X;DP=10014;DPB=10014;DPRA=1.44577;EPP=6923.49;EPPR=14777.7;GTI=6;LEN=1;MEANALT=1.14;MQM=59.6031;MQMR=59.989;NS=93;NUMALT=1;ODDS=0.684174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112501;QR=234635;RO=6816;RPL=3187;RPP=6923.49;RPPR=14795.1;RPR=0;RUN=1;SAF=3187;SAP=6923.49;SAR=0;SRF=6814;SRP=14786.4;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:38:38,0:38:1272:0:0:0,-11.4391,-114.77	0/0:229:228,1:228:7842:1:36:0,-65.3376,-702.226	0/1:161:73,88:73:2498:88:3102:-230.917,0,-176.604	0/0:288:288,0:288:10038:0:0:0,-86.6966,-903.38	0/1:90:35,55:35:1256:55:1960:-149.576,0,-86.2526	0/1:43:14,29:14:480:29:1004:-77.6854,0,-30.5795	0/1:147:57,89:57:1984:89:3171:-241.221,0,-134.52	0/1:216:68,148:68:2368:148:5194:-402.304,0,-148.356	0/0:55:54,0:54:1877:0:0:0,-16.2556,-168.982	0/0:80:80,0:80:2748:0:0:0,-24.0824,-247.559	0/0:42:42,0:42:1418:0:0:0,-12.6433,-127.907	0/1:58:33,25:33:1137:25:870:-61.1098,0,-85.1706	0/0:62:60,0:60:2052:0:0:0,-18.0618,-184.589	0/1:77:33,43:33:1130:43:1514:-113.288,0,-78.763	0/1:58:27,31:27:939:31:1091:-81.0305,0,-67.3629	0/1:56:28,28:28:929:28:985:-72.0928,0,-67.054	0/0:60:60,0:60:2075:0:0:0,-18.0618,-187.019	0/0:62:62,0:62:2128:0:0:0,-18.6639,-191.785	0/0:16:16,0:16:511:0:0:0,-4.81648,-46.2934	0/1:123:61,61:61:2121:61:2135:-155.328,0,-154.07	0/0:130:130,0:130:4486:0:0:0,-39.1339,-403.916	0/0:160:160,0:160:5485:0:0:0,-48.1648,-493.795	0/0:39:39,0:39:1328:0:0:0,-11.7402,-119.812	0/0:115:115,0:115:3895:0:0:0,-34.6184,-350.75	0/0:81:80,1:80:2757:1:36:0,-20.7852,-244.773	0/0:321:321,0:321:11191:0:0:0,-96.6306,-1007.1	0/0:247:247,0:247:8530:0:0:0,-74.3544,-767.727	0/0:37:37,0:37:1232:0:0:0,-11.1381,-111.173	0/1:377:187,190:187:6381:190:6794:-498.03,0,-460.905	0/1:184:92,91:92:3210:91:3219:-234.455,0,-233.675	0/1:110:47,63:47:1617:63:2220:-166.939,0,-112.7	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:9:9,0:9:293:0:0:0,-2.70927,-26.6865	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:16:10,6:10:337:6:212:-14.5884,0,-25.8382	0/1:191:77,114:77:2565:114:3995:-302.186,0,-173.602	0/1:279:129,149:129:4470:149:5249:-388.456,0,-318.428	0/0:41:41,0:41:1414:0:0:0,-12.3422,-127.554	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:175:175,0:175:6103:0:0:0,-52.6802,-549.381	0/0:20:20,0:20:657:0:0:0,-6.0206,-59.4371	0/1:203:86,117:86:2964:117:4162:-313.549,0,-205.88	0/1:57:27,30:27:929:30:1047:-77.2211,0,-66.7611	0/1:40:25,15:25:790:15:457:-29.3843,0,-59.3519	0/0:81:81,0:81:2849:0:0:0,-24.3834,-256.649	0/1:155:73,82:73:2498:82:2903:-214.821,0,-178.412	0/1:211:89,120:89:3075:120:4245:-319,0,-213.759	0/1:152:67,85:67:2259:85:3009:-225.282,0,-157.797	0/0:159:159,0:159:5528:0:0:0,-47.8638,-497.652	0/1:229:95,134:95:3241:134:4698:-354.044,0,-222.976	0/1:8:3,5:3:108:5:176:-13.7758,0,-7.66693	0/0:191:191,0:191:6688:0:0:0,-57.4967,-602.006	0/0:57:57,0:57:1958:0:0:0,-17.1587,-176.487	0/1:14:10,4:10:356:4:144:-9.04171,0,-28.1668	0/1:156:76,80:76:2617:80:2749:-200.663,0,-188.811	0/0:25:25,0:25:876:0:0:0,-7.52575,-79.1543	.:.:.:.:.:.:.:.	0/1:19:12,7:12:424:7:248:-16.9446,0,-32.7768	0/1:63:22,41:22:764:41:1459:-112.628,0,-50.1119	0/0:135:135,0:135:4589:0:0:0,-40.639,-413.19	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:189:189,0:189:6494:0:0:0,-56.8947,-584.559	0/1:276:109,167:109:3789:167:5937:-451.3,0,-258.128	0/1:105:36,69:36:1247:69:2426:-186.872,0,-80.8495	0/0:101:101,0:101:3542:0:0:0,-30.404,-318.991	0/1:183:88,95:88:3069:95:3393:-250.482,0,-221.351	0/1:186:49,137:49:1667:137:4873:-382.683,0,-94.3186	0/1:15:13,2:13:434:2:72:-2.32127,0,-34.8645	0/1:125:56,69:56:1905:69:2452:-183.29,0,-134.092	0/1:86:36,50:36:1260:50:1734:-130.436,0,-87.811	0/0:16:16,0:16:555:0:0:0,-4.81648,-50.276	0/0:107:106,0:106:3650:0:0:0,-31.9092,-328.349	0/1:79:29,50:29:1004:50:1773:-136.036,0,-66.8863	0/0:111:111,0:111:3742:0:0:0,-33.4143,-336.983	0/0:247:246,1:246:8461:1:36:0,-70.7561,-757.919	0/1:153:76,77:76:2615:77:2720:-198.832,0,-189.54	0/1:126:56,70:56:1871:70:2493:-186.684,0,-130.729	0/0:5:5,0:5:156:0:0:0,-1.50515,-14.347	0/0:119:119,0:119:4084:0:0:0,-35.8226,-367.706	0/1:153:75,78:75:2571:78:2745:-201.181,0,-185.583	0/1:278:114,164:114:3931:164:5823:-440.492,0,-270.3	0/0:110:110,0:110:3753:0:0:0,-33.1133,-337.978	0/0:57:57,0:57:1967:0:0:0,-17.1587,-177.3	0/0:73:73,0:73:2464:0:0:0,-21.9752,-222.014	0/1:129:65,64:65:2243:64:2224:-161.585,0,-163.3	0/1:35:13,22:13:419:22:773:-59.3509,0,-27.4839	0/1:65:23,42:23:781:42:1483:-114.197,0,-51.0358	0/0:64:64,0:64:2210:0:0:0,-19.2659,-199.164	0/1:26:16,10:16:555:10:351:-24.0999,0,-42.4493	0/1:64:24,40:24:835:40:1411:-107.511,0,-56.2006	0/1:67:21,46:21:739:46:1626:-126.457,0,-46.6634	0/0:107:107,0:107:3660:0:0:0,-32.2102,-329.604	0/0:78:76,2:76:2596:2:72:0,-16.6436,-227.051
chr02	23480582	.	T	C	47438.3	PASS	AB=0.514908;ABP=13.5634;AC=49;AF=0.260638;AN=188;AO=2823;CIGAR=1X;DP=10270;DPB=10270;DPRA=1.14629;EPP=6133.08;EPPR=16134.9;GTI=0;LEN=1;MEANALT=1.01818;MQM=60;MQMR=59.9863;NS=94;NUMALT=1;ODDS=1.28023;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100217;QR=259970;RO=7445;RPL=0;RPP=6133.08;RPPR=16134.9;RPR=2823;RUN=1;SAF=0;SAP=6133.08;SAR=2823;SRF=0;SRP=16169.6;SRR=7445;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:48,0:48:1669:0:0:0,-14.4494,-150.495	0/0:102:101,1:101:3554:1:36:0,-27.1068,-316.474	0/1:141:73,68:73:2586:68:2427:-176.24,0,-190.544	0/0:245:245,0:245:8585:0:0:0,-73.7523,-772.297	0/1:94:40,54:40:1398:54:1932:-145.86,0,-97.8187	0/1:87:55,32:55:1931:32:1139:-76.6288,0,-147.877	0/1:165:73,92:73:2540:92:3288:-246.47,0,-179.182	0/1:122:64,57:64:2246:57:2028:-146.156,0,-165.767	0/0:112:112,0:112:3894:0:0:0,-33.7154,-350.531	0/0:115:115,0:115:3997:0:0:0,-34.6184,-359.927	0/0:78:78,0:78:2723:0:0:0,-23.4803,-245.314	0/1:80:39,41:39:1361:41:1443:-106.083,0,-98.7037	0/0:92:92,0:92:3205:0:0:0,-27.6948,-288.675	0/1:96:38,58:38:1322:58:2058:-156.591,0,-90.3791	0/1:76:37,39:37:1303:39:1388:-102.341,0,-94.6923	0/1:45:25,20:25:871:20:711:-50.7693,0,-65.1591	0/0:96:96,0:96:3369:0:0:0,-28.8989,-303.43	0/0:76:76,0:76:2667:0:0:0,-22.8783,-240.278	0/0:30:30,0:30:1036:0:0:0,-9.0309,-93.5461	0/1:223:109,114:109:3822:114:4065:-298.906,0,-277.054	0/0:145:145,0:145:5040:0:0:0,-43.6493,-453.754	0/0:179:179,0:179:6285:0:0:0,-53.8844,-565.755	0/0:67:67,0:67:2354:0:0:0,-20.169,-212.119	0/0:106:106,0:106:3692:0:0:0,-31.9092,-332.487	0/0:105:105,0:105:3676:0:0:0,-31.6081,-331.048	0/0:365:363,2:363:12664:2:72:0,-103.039,-1132.79	0/0:209:209,0:209:7277:0:0:0,-62.9153,-655.003	0/0:37:37,0:37:1236:0:0:0,-11.1381,-111.533	0/1:360:169,191:169:5871:191:6778:-501.727,0,-420.144	0/1:119:53,66:53:1862:66:2315:-172.786,0,-132.036	0/1:113:56,57:56:1957:57:2035:-149.405,0,-142.388	0/0:21:20,1:20:695:1:36:0,-2.72335,-59.2731	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:8:8,0:8:272:0:0:0,-2.40824,-24.8112	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	0/1:200:93,107:93:3256:107:3802:-282.173,0,-233.058	0/1:243:127,116:127:4487:116:4135:-299.185,0,-330.855	0/0:75:75,0:75:2623:0:0:0,-22.5772,-236.317	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:162:162,0:162:5641:0:0:0,-48.7669,-507.336	0/0:46:46,0:46:1604:0:0:0,-13.8474,-144.646	0/1:141:51,90:51:1795:90:3176:-243.622,0,-119.386	0/1:67:33,34:33:1155:34:1185:-86.7835,0,-84.0866	0/1:57:30,27:30:1055:27:955:-69.1061,0,-78.1013	0/0:112:112,0:112:3921:0:0:0,-33.7154,-353.09	0/1:109:43,66:43:1499:66:2360:-179.846,0,-102.39	0/1:174:89,85:89:3108:85:3015:-219.2,0,-227.571	0/1:152:87,65:87:3048:65:2291:-160.693,0,-228.795	0/0:143:141,2:141:4904:2:72:0,-36.2106,-434.689	0/1:196:107,89:107:3716:89:3137:-223.557,0,-275.648	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/0:157:157,0:157:5485:0:0:0,-47.2617,-493.789	0/0:48:48,0:48:1677:0:0:0,-14.4494,-151.214	0/1:38:18,20:18:640:20:708:-52.6065,0,-46.4902	0/1:147:74,73:74:2567:73:2581:-188.287,0,-187.029	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/1:41:15,26:15:523:26:922:-70.9545,0,-35.0562	0/1:103:37,66:37:1299:66:2344:-180.214,0,-86.2044	0/0:138:137,1:137:4781:1:36:0,-37.9439,-426.858	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:217:217,0:217:7574:0:0:0,-65.3235,-681.72	0/1:223:100,123:100:3494:123:4356:-325.087,0,-247.548	0/1:74:47,27:47:1623:27:960:-64.4401,0,-124.078	0/0:96:96,0:96:3279:0:0:0,-28.8989,-295.332	0/1:194:92,102:92:3212:102:3604:-266.166,0,-230.907	0/1:87:29,58:29:1007:58:2068:-160.201,0,-64.7504	0/1:37:13,24:13:460:24:864:-66.9445,0,-30.5973	0/1:90:39,51:39:1352:51:1819:-136.898,0,-94.8854	0/1:94:43,51:43:1510:51:1823:-136.054,0,-107.895	0/0:47:47,0:47:1635:0:0:0,-14.1484,-147.437	0/0:203:202,0:202:6995:0:0:0,-60.8081,-629.278	0/1:78:46,32:46:1589:32:1130:-78.5266,0,-119.817	0/0:208:208,0:208:7223:0:0:0,-62.6142,-650.149	0/0:153:153,0:153:5344:0:0:0,-46.0576,-481.107	0/1:151:76,75:76:2691:75:2687:-196.618,0,-196.98	0/1:78:45,33:45:1583:33:1176:-82.6674,0,-119.279	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8767	0/0:107:107,0:107:3704:0:0:0,-32.2102,-333.569	0/1:147:68,79:68:2381:79:2787:-206.818,0,-170.296	0/1:211:123,88:123:4285:88:3100:-215.709,0,-322.232	0/0:109:108,1:108:3805:1:36:0,-29.214,-339.053	0/0:70:70,0:70:2453:0:0:0,-21.0721,-221.025	0/0:81:81,0:81:2832:0:0:0,-24.3834,-255.12	0/1:137:62,75:62:2171:75:2654:-197.865,0,-154.416	0/1:55:29,26:29:1023:26:920:-66.5604,0,-75.8251	0/1:86:43,43:43:1510:43:1535:-112.554,0,-110.303	0/0:63:63,0:63:2179:0:0:0,-18.9649,-196.375	0/1:88:45,43:45:1587:43:1527:-111.232,0,-116.629	0/1:125:59,66:59:2036:66:2340:-173.23,0,-145.882	0/1:59:22,37:22:776:37:1321:-101.431,0,-52.4014	0/0:182:182,0:182:6368:0:0:0,-54.7875,-573.227	0/0:92:92,0:92:3263:0:0:0,-27.6948,-293.892
chr02	23480639	.	T	G	161865	PASS	AB=0.486912;ABP=11.4227;AC=139;AF=0.739362;AN=188;AO=7739;CIGAR=1X;DP=10652;DPB=10652;DPRA=0;EPP=16808;EPPR=6324.17;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9863;MQMR=60;NS=94;NUMALT=1;ODDS=0.931861;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277319;QR=103640;RO=2911;RPL=7739;RPP=16808;RPPR=6324.17;RPR=0;RUN=1;SAF=0;SAP=16808;SAR=7739;SRF=0;SRP=6324.17;SRR=2911;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:104:1,103:1:36:103:3704:-329.962,-27.7088,0	0/1:150:73,77:73:2598:77:2764:-203.847,0,-188.911	1/1:256:0,256:0:0:256:9166:-824.722,-77.0637,0	0/1:97:55,42:55:1927:42:1508:-106.815,0,-144.501	0/1:87:33,54:33:1173:54:1940:-148.687,0,-79.6859	0/1:173:97,76:97:3484:76:2728:-193.684,0,-261.692	0/1:125:61,64:61:2162:64:2284:-168.193,0,-157.215	1/1:113:0,113:0:0:113:4052:-364.597,-34.0164,0	1/1:121:0,121:0:0:121:4348:-391.493,-36.4246,0	1/1:80:0,80:0:0:80:2880:-259.436,-24.0824,0	0/1:88:45,43:45:1601:43:1540:-112.402,0,-117.888	1/1:93:0,93:0:0:93:3337:-300.546,-27.9958,0	0/1:102:60,42:60:2141:42:1507:-105.22,0,-162.251	0/1:77:41,36:41:1476:36:1296:-93.7646,0,-109.957	0/1:46:21,25:21:756:25:900:-67.4736,0,-54.5198	1/1:98:0,98:0:0:98:3524:-317.368,-29.5009,0	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0	1/1:34:1,33:1:36:33:1178:-102.729,-6.63675,0	0/1:230:115,115:115:4098:115:4117:-301.476,0,-299.767	1/1:153:0,153:0:0:153:5474:-492.787,-46.0576,0	1/1:190:1,189:1:21:189:6780:-608.171,-55.0958,0	1/1:70:0,70:0:0:70:2497:-224.981,-21.0721,0	1/1:105:1,103:1:36:103:3685:-328.326,-27.9938,0	1/1:110:0,110:0:0:110:3914:-352.452,-33.1133,0	1/1:388:1,387:1:36:387:13881:-1245.46,-113.201,0	1/1:224:0,224:0:0:224:8031:-722.808,-67.4307,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:373:194,179:194:6931:179:6431:-466.589,0,-511.568	0/1:125:68,57:68:2409:57:2021:-144.532,0,-179.434	0/1:116:57,59:57:2039:59:2116:-155.789,0,-148.862	1/1:25:1,24:1:36:24:864:-74.4843,-3.92748,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:25:13,12:13:453:12:428:-31.3331,0,-33.5739	0/1:209:113,96:113:4049:96:3433:-246.266,0,-301.68	0/1:249:119,130:119:4233:130:4652:-343.886,0,-306.191	1/1:77:0,77:0:0:77:2760:-248.641,-23.1793,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:169:0,169:0:0:169:6072:-546.09,-50.8741,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:142:91,51:91:3261:51:1832:-122.415,0,-250.962	0/1:66:33,33:33:1180:33:1184:-87.0003,0,-86.6401	0/1:60:28,32:28:989:32:1148:-85.5671,0,-71.2602	1/1:120:0,120:0:0:120:4289:-386.186,-36.1236,0	0/1:112:67,45:67:2408:45:1612:-111.655,0,-183.261	0/1:183:86,97:86:3032:97:3465:-256.972,0,-218.017	0/1:156:69,87:69:2469:87:3101:-232.356,0,-175.501	1/1:150:3,147:3:108:147:5292:-466.336,-35.0793,0	0/1:207:93,114:93:3299:114:4083:-305.34,0,-234.812	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:159:0,159:0:0:159:5701:-513.205,-47.8638,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:40:21,19:21:741:19:680:-49.488,0,-54.9704	0/1:151:76,75:76:2717:75:2673:-195.359,0,-199.316	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/1:42:26,16:26:921:16:572:-39.1702,0,-70.5619	0/1:107:68,39:68:2414:39:1396:-93.7289,0,-185.303	1/1:141:1,140:1:36:140:5028:-449.066,-38.847,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:224:0,224:0:0:224:8040:-723.617,-67.4307,0	0/1:227:124,103:124:4422:103:3688:-263.789,0,-329.816	0/1:81:30,51:30:1050:51:1824:-140.058,0,-70.4228	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	0/1:197:105,92:105:3697:92:3296:-237.556,0,-273.625	0/1:90:59,31:59:2071:31:1112:-73.2986,0,-159.563	0/1:38:25,13:25:870:13:468:-31.0205,0,-67.1729	0/1:92:50,42:50:1792:42:1504:-107.959,0,-133.868	0/1:98:52,46:52:1857:46:1644:-118.748,0,-137.907	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:208:0,208:0:0:208:7432:-668.925,-62.6142,0	0/1:79:33,46:33:1188:46:1641:-124.195,0,-83.4472	1/1:221:0,221:0:0:221:7921:-712.911,-66.5276,0	1/1:160:0,160:0:0:160:5745:-517.162,-48.1648,0	0/1:158:79,79:79:2844:79:2828:-207.196,0,-208.634	0/1:77:32,45:32:1122:45:1616:-122.551,0,-78.1045	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:108:0,108:0:0:108:3857:-347.324,-32.5112,0	0/1:149:81,68:81:2878:68:2440:-175.001,0,-214.401	0/1:218:90,128:90:3176:128:4580:-346.736,0,-220.435	1/1:111:1,110:1:36:110:3933:-350.563,-29.8161,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	0/1:143:77,66:77:2753:66:2361:-169.701,0,-204.963	0/1:55:27,28:27:972:28:1008:-74.4797,0,-71.2413	0/1:89:44,44:44:1576:44:1570:-114.741,0,-115.281	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	0/1:91:43,48:43:1533:48:1728:-128.412,0,-110.867	0/1:129:69,60:69:2465:60:2148:-154.755,0,-183.27	0/1:63:41,22:41:1460:22:792:-52.6408,0,-112.731	1/1:189:0,189:0:0:189:6750:-607.572,-56.8947,0	1/1:96:0,96:0:0:96:3437:-309.541,-28.8989,0
chr02	23481093	.	T	C	136631	PASS	AB=0.422145;ABP=304.952;AC=134;AF=0.72043;AN=186;AO=6776;CIGAR=1X;DP=10118;DPB=10118;DPRA=21.6094;EPP=14699.5;EPPR=7240.53;GTI=3;LEN=1;MEANALT=1.05618;MQM=59.9875;MQMR=59.9862;NS=93;NUMALT=1;ODDS=1.0439;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=239824;QR=119241;RO=3337;RPL=1;RPP=14708.2;RPPR=7240.53;RPR=6775;RUN=1;SAF=6775;SAP=14708.2;SAR=1;SRF=3337;SRP=7249.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:63:0,63:0:0:63:2222:-200.244,-18.9649,0	1/1:171:0,171:0:0:171:6071:-546.498,-51.4761,0	0/1:132:88,43:88:3156:43:1527:-98.0741,0,-244.618	1/1:171:1,170:1:36:170:5996:-536.154,-47.8779,0	0/1:77:48,29:48:1724:29:1019:-68.842,0,-132.266	0/1:40:28,12:28:1000:12:428:-26.8176,0,-78.2732	0/1:74:54,20:54:1940:20:710:-41.9497,0,-152.6	0/1:262:143,119:143:5124:119:4177:-297.247,0,-382.43	1/1:132:0,132:0:0:132:4647:-418.375,-39.736,0	1/1:119:0,119:0:0:119:4242:-381.955,-35.8226,0	1/1:57:0,57:0:0:57:1993:-179.644,-17.1587,0	0/1:68:35,33:35:1260:33:1159:-84.1458,0,-93.2354	1/1:79:0,79:0:0:79:2794:-251.701,-23.7814,0	0/1:89:46,43:46:1656:43:1518:-110.12,0,-122.537	0/1:100:63,37:63:2264:37:1311:-88.1879,0,-173.919	0/1:51:30,21:30:1072:21:748:-52.2928,0,-81.4399	1/1:79:0,79:0:0:79:2782:-250.622,-23.7814,0	1/1:74:0,74:0:0:74:2622:-236.228,-22.2762,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:231:138,93:138:4907:93:3278:-225.705,0,-372.247	1/1:159:0,159:0:0:159:5617:-505.659,-47.8638,0	1/1:89:1,88:1:36:88:3137:-278.958,-23.1934,0	1/1:84:0,84:0:0:84:2970:-267.534,-25.2865,0	1/1:195:0,195:0:0:195:6902:-621.254,-58.7009,0	1/1:93:0,93:0:0:93:3283:-295.693,-27.9958,0	1/1:266:0,266:0:0:266:9352:-841.661,-80.074,0	1/1:230:0,230:0:0:230:8131:-731.814,-69.2369,0	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	0/1:252:124,128:124:4447:128:4506:-329.856,0,-324.526	0/1:125:87,38:87:3086:38:1329:-82.2787,0,-240.337	0/1:81:39,42:39:1400:42:1460:-107.307,0,-101.916	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:292:142,150:142:5084:150:5327:-391.668,0,-369.803	0/1:233:136,97:136:4835:97:3420:-237.871,0,-365.168	1/1:69:0,69:0:0:69:2436:-219.495,-20.7711,0	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	1/1:66:0,66:0:0:66:2352:-211.939,-19.868,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:193:108,85:108:3864:85:3006:-212.674,0,-289.857	0/1:132:65,67:65:2340:67:2362:-173.103,0,-171.123	0/1:121:66,55:66:2360:55:1964:-140.611,0,-176.234	1/1:108:0,108:0:0:108:3834:-345.257,-32.5112,0	0/1:135:73,62:73:2616:62:2170:-154.928,0,-195.049	0/1:143:95,48:95:3370:48:1708:-110.959,0,-260.467	0/1:152:87,65:87:3105:65:2328:-164.023,0,-233.919	1/1:171:0,171:0:0:171:6070:-546.218,-51.4761,0	0/1:188:92,96:92:3279:96:3415:-250.972,0,-238.737	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:94:0,93:0:0:93:3268:-294.023,-27.9958,0	1/1:32:0,32:0:0:32:1144:-103.266,-9.63296,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:142:76,66:76:2715:66:2329:-167.123,0,-201.839	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:21:10,11:10:360:11:387:-28.8443,0,-26.4227	0/1:72:31,41:31:1108:41:1464:-110.382,0,-78.3568	1/1:140:1,139:1:36:139:4942:-441.334,-38.5459,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:185:0,185:0:0:185:6585:-592.734,-55.6906,0	0/1:351:214,137:214:7619:137:4847:-330.729,0,-580.088	0/1:98:59,39:59:2103:39:1379:-94.907,0,-160.038	1/1:77:0,77:0:0:77:2726:-245.584,-23.1793,0	0/1:236:162,74:162:5799:74:2640:-166.804,0,-450.98	0/1:99:70,29:70:2500:29:1023:-62.5798,0,-195.451	0/1:29:16,13:16:572:13:468:-33.7298,0,-43.0836	0/1:70:37,33:37:1320:33:1184:-85.7962,0,-98.0298	0/1:87:52,35:52:1860:35:1227:-84.5434,0,-141.49	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:59:1,58:1:36:58:2064:-182.433,-14.1625,0	0/1:84:50,34:50:1787:34:1212:-84.0998,0,-135.822	1/1:158:0,158:0:0:158:5609:-504.935,-47.5627,0	1/1:164:0,164:0:0:164:5831:-524.907,-49.3689,0	0/1:151:91,60:91:3252:60:2135:-146.962,0,-247.443	0/1:168:100,68:100:3564:68:2428:-168.203,0,-270.396	1/1:8:0,8:0:0:8:271:-24.7194,-2.40824,0	1/1:118:0,118:0:0:118:4207:-378.812,-35.5215,0	0/1:128:93,35:93:3315:35:1230:-72.4706,0,-260.037	0/1:280:175,105:175:6250:105:3686:-247.658,0,-478.307	1/1:132:1,131:1:36:131:4637:-413.897,-36.1377,0	1/1:70:0,70:0:0:70:2481:-223.542,-21.0721,0	1/1:130:0,130:0:0:130:4574:-411.83,-39.1339,0	0/1:184:98,85:98:3511:85:3015:-216.174,0,-260.79	0/1:52:24,28:24:864:28:991:-73.85,0,-62.429	0/1:106:53,52:53:1896:52:1821:-132.201,0,-138.95	1/1:74:0,74:0:0:74:2614:-235.508,-22.2762,0	0/1:41:17,24:17:612:24:822:-61.9512,0,-43.0712	0/1:49:22,27:22:784:27:968:-72.6869,0,-56.1334	0/1:107:72,35:72:2562:35:1231:-78.883,0,-198.619	1/1:113:0,113:0:0:113:4016:-361.632,-34.0164,0	1/1:137:0,136:0:0:136:4802:-431.979,-40.9401,0
chr02	23481107	.	C	T	58845.5	PASS	AB=0.573955;ABP=276.98;AC=51;AF=0.271277;AN=188;AO=3336;CIGAR=1X;DP=10188;DPB=10188;DPRA=1.30547;EPP=7247.04;EPPR=14840.7;GTI=4;LEN=1;MEANALT=1.03636;MQM=59.9769;MQMR=59.992;NS=94;NUMALT=1;ODDS=0.439691;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119279;QR=244042;RO=6845;RPL=3335;RPP=7238.36;RPPR=14823.3;RPR=1;RUN=1;SAF=3335;SAP=7238.36;SAR=1;SRF=6843;SRP=14849.4;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:64:63,0:63:2247:0:0:0,-18.9649,-202.133	0/0:174:174,0:174:6205:0:0:0,-52.3792,-558.548	0/1:133:44,89:44:1558:89:3177:-246.116,0,-100.473	0/0:170:169,1:169:6040:1:36:0,-47.5768,-540.107	0/1:75:28,47:28:995:47:1681:-128.999,0,-67.2868	0/1:40:11,28:11:392:28:989:-77.3676,0,-23.6577	0/1:71:20,51:20:711:51:1836:-144.148,0,-42.9425	0/1:268:118,150:118:4187:150:5356:-401.497,0,-296.336	0/0:133:132,0:132:4686:0:0:0,-39.736,-421.352	0/0:121:121,0:121:4331:0:0:0,-36.4246,-389.964	0/0:53:53,0:53:1867:0:0:0,-15.9546,-168.306	0/1:70:35,35:35:1233:35:1256:-92.2732,0,-90.2	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.04	0/1:91:45,46:45:1589:46:1656:-121.935,0,-115.904	0/1:100:37,63:37:1328:63:2248:-172.392,0,-89.7192	0/1:52:21,31:21:748:31:1108:-84.3774,0,-51.9917	0/0:76:76,0:76:2675:0:0:0,-22.8783,-240.994	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:36:35,0:35:1256:0:0:0,-10.536,-113.024	0/1:227:95,132:95:3399:132:4724:-356.985,0,-237.79	0/0:163:163,0:163:5762:0:0:0,-49.0679,-518.698	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.195	0/0:83:81,1:81:2865:1:36:0,-21.446,-254.489	0/0:192:189,3:189:6735:3:108:0,-47.7226,-596.15	0/0:96:95,1:95:3404:1:32:0,-25.6996,-303.375	0/0:271:271,0:271:9681:0:0:0,-81.5791,-871.238	0/0:232:232,0:232:8301:0:0:0,-69.839,-747.097	0/0:56:56,0:56:1997:0:0:0,-16.8577,-180.002	0/1:257:129,128:129:4616:128:4590:-335.886,0,-338.239	0/1:128:41,87:41:1467:87:3124:-242.854,0,-93.7935	0/1:83:45,38:45:1594:38:1351:-96.9024,0,-118.763	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:292:151,141:151:5385:141:5029:-364.854,0,-396.878	0/1:237:96,141:96:3431:141:5037:-382.128,0,-237.659	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.295	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:195:86,109:86:3046:109:3896:-292.132,0,-215.67	0/1:131:66,65:66:2364:65:2327:-170.254,0,-173.583	0/1:121:56,65:56:2001:65:2317:-172.364,0,-143.937	0/0:110:110,0:110:3932:0:0:0,-33.1133,-354.073	0/1:134:61,73:61:2179:73:2614:-195.17,0,-156.038	0/1:147:50,97:50:1783:97:3472:-268.44,0,-116.501	0/1:151:65,86:65:2312:86:3071:-231.162,0,-162.886	0/0:174:173,0:173:6145:0:0:0,-52.0782,-552.934	0/1:188:98,90:98:3486:90:3220:-233.429,0,-257.358	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:97:97,0:97:3440:0:0:0,-29.1999,-309.811	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:142:67,75:67:2364:75:2663:-197.168,0,-170.274	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:9:7,2:7:252:2:70:-3.93806,0,-20.3197	0/1:20:10,10:10:360:10:356:-26.3606,0,-26.7237	0/1:72:41,31:41:1464:31:1093:-77.0035,0,-110.382	0/0:140:139,1:139:4966:1:36:0,-38.5459,-443.49	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:187:187,0:187:6691:0:0:0,-56.2926,-602.266	0/1:351:137,214:137:4878:214:7668:-584.492,0,-333.513	0/1:100:40,60:40:1432:60:2144:-163.125,0,-99.0746	0/0:77:76,1:76:2702:1:36:0,-19.581,-239.826	0/1:242:77,165:77:2747:165:5908:-458.979,0,-174.623	0/1:98:27,71:27:972:71:2548:-200.069,0,-58.297	0/1:29:14,15:14:489:15:540:-40.2067,0,-35.609	0/1:69:33,36:33:1175:36:1296:-96.1729,0,-85.2859	0/1:86:38,48:38:1340:48:1719:-129.106,0,-95.0087	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:60:59,1:59:2112:1:36:0,-14.4635,-186.751	0/1:82:32,50:32:1144:50:1778:-135.618,0,-78.5851	0/0:156:156,0:156:5539:0:0:0,-46.9607,-498.637	0/0:169:169,0:169:6025:0:0:0,-50.8741,-542.355	0/1:151:59,92:59:2108:92:3266:-248.703,0,-144.534	0/1:168:70,98:70:2504:98:3499:-264.548,0,-175.04	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/1:123:33,90:33:1188:90:3219:-252.904,0,-70.2019	0/1:280:108,172:108:3851:172:6159:-470.119,0,-262.498	0/0:132:132,0:132:4735:0:0:0,-39.736,-426.293	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/0:132:132,0:132:4671:0:0:0,-39.736,-420.551	0/1:190:89,101:89:3183:101:3603:-267.28,0,-229.498	0/1:53:29,24:29:1032:24:860:-61.7672,0,-77.2389	0/1:109:56,53:56:1998:53:1904:-138.825,0,-147.28	0/0:74:74,0:74:2628:0:0:0,-22.2762,-236.766	0/1:41:25,16:25:892:16:576:-39.8328,0,-68.2575	0/1:48:28,20:28:986:20:716:-50.3183,0,-74.6027	0/1:108:37,71:37:1328:71:2539:-196.249,0,-87.311	0/0:116:115,0:115:4107:0:0:0,-34.6184,-369.456	0/0:139:139,0:139:4966:0:0:0,-41.8432,-447.089
chr02	23484294	.	CAGGC	TAGGC,TAGGT	319029	PASS	AB=0.537706,0.458063;ABP=84.7239,104.094;AC=139,49;AF=0.739362,0.260638;AN=188;AO=9705,3045;CIGAR=1X4M,1X3M1X;DP=12806;DPB=12806;DPRA=19.6605,1.03999;EPP=10032.1,3247.52;EPPR=5.18177;GTI=1;LEN=1,5;MEANALT=2.08602,2.53846;MQM=59.4146,48.9061;MQMR=60;NS=94;NUMALT=2;ODDS=1.41222;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=347015,106949;QR=36;RO=1;RPL=8200,2589;RPP=10032.1,3247.52;RPPR=5.18177;RPR=1505,456;RUN=1,1;SAF=9705,3045;SAP=21077.2,6615.14;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45,0:0:0:45,0:1595,0:-143.831,-13.5464,0,-143.831,-13.5464,-143.831	1/1:207:0,205,0:0:0:205,0:7343,0:-660.311,-61.7112,0,-660.311,-61.7112,-660.311	1/2:167:0,77,89:0:0:77,89:2748,3121:-476.191,-252.411,-229.231,-223.932,0,-197.14	1/1:413:0,412,0:0:0:412,0:14771,0:-1328.29,-124.024,0,-1328.29,-124.024,-1328.29	1/2:93:0,54,39:0:0:54,39:1926,1383:-268.58,-111.958,-95.7021,-156.975,0,-145.235	1/2:75:0,37,38:0:0:37,38:1328,1323:-215.705,-107.386,-96.2481,-108.672,0,-97.2326	1/2:227:0,123,102:0:0:123,102:4391,3605:-647.793,-289.958,-252.931,-357.86,0,-327.155	1/2:200:0,121,79:0:0:121,79:4336,2799:-580.614,-227.076,-190.651,-353.893,0,-330.111	1/1:130:0,129,0:0:0:129,0:4604,0:-414.046,-38.8329,0,-414.046,-38.8329,-414.046	1/1:137:0,135,0:0:0:135,0:4803,0:-431.884,-40.6391,0,-431.884,-40.6391,-431.884	1/1:98:0,97,0:0:0:97,0:3488,0:-313.676,-29.1999,0,-313.676,-29.1999,-313.676	1/2:90:0,45,45:0:0:45,45:1603,1568:-256.297,-125.689,-112.143,-130.958,0,-117.411	1/1:104:0,104,0:0:0:104,0:3732,0:-336.038,-31.3071,0,-336.038,-31.3071,-336.038	1/2:77:0,42,35:0:0:42,35:1495,1205:-218.906,-97.1688,-84.5255,-122.085,0,-111.549	1/2:89:0,47,42:0:0:47,42:1684,1476:-255.435,-118.097,-103.949,-137.689,0,-125.046	1/2:82:0,41,40:0:0:41,40:1470,1413:-232.964,-113.392,-101.05,-119.568,0,-107.527	1/1:86:0,86,0:0:0:86,0:3088,0:-278.115,-25.8886,0,-278.115,-25.8886,-278.115	1/1:95:0,95,0:0:0:95,0:3388,0:-305.062,-28.5979,0,-305.062,-28.5979,-305.062	1/1:67:0,67,0:0:0:67,0:2406,0:-216.493,-20.169,0,-216.493,-20.169,-216.493	1/2:378:0,225,150:0:0:225,150:8068,5244:-1077.88,-419.989,-352.258,-658.019,0,-612.865	1/1:272:0,271,0:0:0:271,0:9673,0:-869.673,-81.5791,0,-869.673,-81.5791,-869.673	1/1:130:0,130,0:0:0:130,0:4664,0:-419.915,-39.1339,0,-419.915,-39.1339,-419.915	1/1:104:0,103,0:0:0:103,0:3679,0:-330.907,-31.0061,0,-330.907,-31.0061,-330.907	1/1:170:0,169,0:0:0:169,0:6004,0:-539.833,-50.8741,0,-539.833,-50.8741,-539.833	1/1:120:0,119,0:0:0:119,0:4228,0:-379.876,-35.8226,0,-379.876,-35.8226,-379.876	1/1:483:0,481,0:0:0:481,0:17217,0:-1548.66,-144.795,0,-1548.66,-144.795,-1548.66	1/1:373:0,370,0:0:0:370,0:13234,0:-1189.91,-111.381,0,-1189.91,-111.381,-1189.91	1/1:40:0,40,0:0:0:40,0:1436,0:-129.479,-12.0412,0,-129.479,-12.0412,-129.479	1/2:467:0,296,168:0:0:296,168:10605,5896:-1344.09,-479.201,-390.096,-864.903,0,-814.33	1/2:134:0,74,59:0:0:74,59:2640,2104:-384.192,-169.011,-146.734,-215.244,0,-197.484	1/2:128:0,67,61:0:0:67,61:2387,2147:-367.001,-172.543,-152.374,-194.81,0,-176.447	1/1:17:0,17,0:0:0:17,0:612,0:-55.3849,-5.11751,0,-55.3849,-5.11751,-55.3849	1/1:21:0,21,0:0:0:21,0:756,0:-68.3388,-6.32163,0,-68.3388,-6.32163,-68.3388	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:11:0,8,3:0:0:8,3:284,102:-31.7377,-8.59426,-6.18602,-23.4869,0,-22.5838	1/2:275:0,154,119:0:0:154,119:5516,4187:-789.753,-340.217,-293.859,-449.535,0,-413.713	1/2:284:0,167,115:0:0:167,115:5982,3963:-804.209,-316.639,-266.367,-487.579,0,-452.96	1/1:89:0,89,0:0:0:89,0:3192,0:-287.495,-26.7917,0,-287.495,-26.7917,-287.495	2/2:7:0,0,7:0:0:0,7:0,251:-22.7081,-22.7081,-22.7081,-2.10721,-2.10721,0	1/1:396:0,395,0:0:0:395,0:14120,0:-1269.07,-118.907,0,-1269.07,-118.907,-1269.07	1/1:53:0,53,0:0:0:53,0:1908,0:-171.884,-15.9546,0,-171.884,-15.9546,-171.884	1/2:237:0,143,91:0:0:143,91:5101,3195:-671.93,-256.465,-213.418,-415.505,0,-388.111	1/2:87:0,45,42:0:0:45,42:1618,1483:-251.278,-119.539,-105.992,-132.093,0,-119.45	1/2:85:0,44,41:0:0:44,41:1571,1449:-245.288,-117.257,-104.012,-128.384,0,-116.042	1/1:77:0,76,0:0:0:76,0:2712,0:-243.961,-22.8783,0,-243.961,-22.8783,-243.961	1/2:166:0,79,86:0:0:79,86:2811,3005:-471.91,-242.822,-219.041,-229.101,0,-203.212	1/2:214:0,115,98:0:0:115,98:4113,3432:-610.439,-275.57,-240.951,-334.863,0,-305.362	1/2:145:0,83,62:0:0:83,62:2964,2187:-417.535,-176.144,-151.159,-241.743,0,-223.079	1/1:170:0,168,0:0:0:168,0:5994,0:-538.711,-50.573,0,-538.711,-50.573,-538.711	1/2:227:0,114,113:0:0:114,113:4066,3968:-653.846,-322.435,-288.117,-331.765,0,-297.748	1/2:11:0,6,5:0:0:6,5:216,174:-31.9641,-14.3769,-12.5707,-17.9387,0,-16.4336	1/1:212:0,212,0:0:0:212,0:7578,0:-681.655,-63.8184,0,-681.655,-63.8184,-681.655	1/1:37:0,37,0:0:0:37,0:1324,0:-119.458,-11.1381,0,-119.458,-11.1381,-119.458	1/2:22:0,14,8:0:0:14,8:482,281:-62.3047,-23.1611,-18.9467,-39.4916,0,-37.0834	1/2:203:0,101,102:0:0:101,102:3599,3562:-579.15,-285.986,-255.582,-293.515,0,-262.81	1/1:69:0,69,0:0:0:69,0:2463,0:-221.692,-20.7711,0,-221.692,-20.7711,-221.692	1/2:8:0,3,5:0:0:3,5:108,168:-22.7323,-13.9108,-13.0077,-9.17208,0,-7.66693	1/2:17:0,12,5:0:0:12,5:432,174:-49.48,-14.2183,-10.6059,-35.6088,0,-34.1037	1/2:108:0,59,49:0:0:59,49:2103,1710:-308.998,-137.689,-119.928,-171.659,0,-156.908	1/1:146:1,140,4:1:36:140,4:5014,144:-447.634,-39.205,0,-436.64,-30.8564,-438.374	1/1:14:0,14,0:0:0:14,0:504,0:-45.6674,-4.21442,0,-45.6674,-4.21442,-45.6674	1/1:179:0,176,0:0:0:176,0:6291,0:-565.851,-52.9813,0,-565.851,-52.9813,-565.851	1/2:216:0,109,105:0:0:109,105:3914,3736:-619.666,-300.788,-267.976,-318.89,0,-287.282	1/2:87:0,47,39:0:0:47,39:1688,1374:-247.986,-110.368,-96.2191,-137.656,0,-125.916	1/1:173:0,172,1:0:0:172,1:6131,36:-551.504,-51.7772,0,-548.595,-48.5114,-548.294	1/2:185:0,79,106:0:0:79,106:2827,3725:-530.464,-299.956,-276.174,-230.861,0,-198.952	1/2:114:0,41,73:0:0:41,73:1472,2573:-327.815,-207.794,-195.452,-120.376,0,-98.401	1/2:54:0,23,30:0:0:23,30:828,1038:-149.842,-82.2991,-75.3754,-67.6339,0,-58.603	1/2:93:0,46,47:0:0:46,47:1644,1651:-268.146,-134.124,-120.276,-134.376,0,-120.228	1/2:92:0,42,49:0:0:42,49:1503,1748:-264.742,-142.198,-129.555,-122.547,0,-107.797	1/1:24:0,24,0:0:0:24,0:860,0:-77.6034,-7.22472,0,-77.6034,-7.22472,-77.6034	1/1:134:0,132,1:0:0:132,1:4699,36:-422.746,-39.736,0,-419.816,-36.7372,-419.515	1/2:91:0,50,40:0:0:50,40:1792,1416:-260.585,-114.457,-99.4059,-146.123,0,-134.082	1/1:260:0,259,0:0:0:259,0:9246,0:-831.7,-77.9668,0,-831.7,-77.9668,-831.7	1/1:198:0,198,0:0:0:198,0:7087,0:-637.709,-59.6039,0,-637.709,-59.6039,-637.709	1/2:163:0,90,72:0:0:90,72:3215,2513:-464.749,-202.789,-175.696,-262.03,0,-240.356	1/2:175:0,99,76:0:0:99,76:3523,2623:-499.043,-211.949,-182.148,-287.442,0,-264.563	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:153:0,153,0:0:0:153,0:5451,0:-490.602,-46.0576,0,-490.602,-46.0576,-490.602	1/2:216:0,132,83:0:0:132,83:4711,2927:-620.972,-236.949,-197.213,-384.095,0,-359.11	1/2:265:0,138,127:0:0:138,127:4947,4481:-764.159,-360.762,-319.219,-403.751,0,-365.52	1/1:114:0,114,0:0:0:114,0:4078,0:-366.942,-34.3174,0,-366.942,-34.3174,-366.942	1/1:99:0,99,0:0:0:99,0:3535,0:-318.226,-29.802,0,-318.226,-29.802,-318.226	1/1:116:0,116,0:0:0:116,0:4151,0:-373.707,-34.9195,0,-373.707,-34.9195,-373.707	1/2:165:0,84,81:0:0:84,81:3012,2851:-475.287,-229.821,-204.534,-245.819,0,-221.436	1/2:65:0,28,37:0:0:28,37:1004,1291:-186.261,-104.367,-95.9381,-82.247,0,-71.1089	1/2:94:0,54,40:0:0:54,40:1927,1412:-271.733,-114.664,-98.4082,-157.422,0,-145.381	1/1:63:0,63,0:0:0:63,0:2255,0:-202.969,-18.9649,0,-202.969,-18.9649,-202.969	1/2:68:0,35,33:0:0:35,33:1256,1165:-195.721,-93.2921,-82.756,-102.781,0,-92.8468	1/2:77:0,34,43:0:0:34,43:1216,1523:-221.554,-122.397,-112.162,-99.5106,0,-86.5663	1/2:90:0,31,59:0:0:31,59:1112,2075:-256.524,-165.849,-156.518,-91.0287,0,-73.2679	1/1:131:0,129,1:0:0:129,1:4611,36:-414.644,-38.8329,0,-411.735,-35.9238,-411.434	1/1:129:0,129,0:0:0:129,0:4636,0:-416.948,-38.8329,0,-416.948,-38.8329,-416.948
chr02	23484351	.	TGAGT	AGAGT,AGAGG	228728	PASS	AB=0.484854,0.507616;ABP=14.6533,5.95403;AC=139,47;AF=0.747312,0.252688;AN=186;AO=7728,2978;CIGAR=1X4M,1X3M1X;DP=10774;DPB=10774.4;DPRA=0,1.4942;EPP=16662.8,6452.3;EPPR=7.35324;GTI=1;LEN=1,5;MEANALT=2.2043,2.75439;MQM=59.9946,59.9762;MQMR=60;NS=93;NUMALT=2;ODDS=1.80278;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=276848,104137;QR=58;RO=2;RPL=7714,2976;RPP=16662.8,6452.3;RPPR=7.35324;RPR=14,2;RUN=1,1;SAF=0,0;SAP=16784.1,6469.66;SAR=7728,2978;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:213:0,211,1:0:0:211,1:7548,36:-678.981,-63.5173,0,-676.044,-60.5799,-675.743	1/2:171:0,84,84:0:0:84,84:3020,2920:-483.802,-237.412,-212.125,-246.403,0,-221.116	1/1:223:0,220,0:0:0:220,0:7884,0:-709.222,-66.2266,0,-709.222,-66.2266,-709.222	1/2:90:0,49,41:0:0:49,41:1755,1406:-257.622,-114.489,-99.7386,-143.483,0,-131.141	1/2:58:0,26,32:0:0:26,32:928,1108:-166.052,-90.3921,-82.5653,-76.0115,0,-66.3785	1/2:179:0,83,93:0:0:83,93:2980,3277:-509.941,-266.85,-241.864,-243.138,0,-215.142	1/2:160:0,93,65:0:0:93,65:3332,2239:-453.603,-181.852,-153.856,-271.747,0,-252.18	1/1:124:0,124,0:0:0:124,0:4406,0:-396.715,-37.3277,0,-396.715,-37.3277,-396.715	1/1:142:0,142,0:0:0:142,0:5068,0:-456.267,-42.7463,0,-456.267,-42.7463,-456.267	1/1:49:0,49,0:0:0:49,0:1760,0:-158.684,-14.7505,0,-158.684,-14.7505,-158.684	1/2:86:0,37,49:0:0:37,49:1324,1708:-247.224,-139.253,-128.115,-108.324,0,-93.5735	1/1:102:0,102,0:0:0:102,0:3655,0:-329.153,-30.7051,0,-329.153,-30.7051,-329.153	1/2:57:0,26,30:0:0:26,30:917,1036:-158.924,-84.2541,-76.4273,-74.7544,0,-65.7235	1/2:96:0,48,48:0:0:48,48:1728,1662:-276.416,-135.414,-120.964,-141.356,0,-126.906	1/2:59:0,27,32:0:0:27,32:968,1143:-172.498,-93.5467,-85.4188,-79.3096,0,-69.6766	1/1:75:0,73,0:0:0:73,0:2620,0:-235.687,-21.9752,0,-235.687,-21.9752,-235.687	1/1:75:0,74,0:0:0:74,0:2664,0:-239.645,-22.2762,0,-239.645,-22.2762,-239.645	1/1:45:0,45,0:0:0:45,0:1611,0:-145.279,-13.5464,0,-145.279,-13.5464,-145.279	1/2:308:0,148,159:0:0:148,159:5300,5559:-884.453,-452.224,-407.672,-432.222,0,-384.359	1/1:161:1,158,1:1:36:158,1:5627,30:-502.976,-44.6153,0,-500.878,-45.1841,-503.515	1/1:143:0,143,0:0:0:143,0:5122,0:-461.121,-43.0473,0,-461.121,-43.0473,-461.121	1/1:81:1,80,0:1:22:80,0:2865,0:-255.886,-22.1835,0,-256.187,-24.0824,-257.864	1/1:168:0,168,0:0:0:168,0:5996,0:-539.741,-50.573,0,-539.741,-50.573,-539.741	1/1:57:0,57,0:0:0:57,0:2044,0:-184.232,-17.1587,0,-184.232,-17.1587,-184.232	1/1:331:0,329,2:0:0:329,2:11771,67:-1058.91,-99.0389,0,-1053.49,-93.2781,-1052.89	1/1:242:0,239,1:0:0:239,1:8588,31:-772.657,-71.9462,0,-770.169,-69.4294,-769.868	1/1:48:0,48,0:0:0:48,0:1728,0:-155.805,-14.4494,0,-155.805,-14.4494,-155.805	1/2:351:0,181,169:0:0:181,169:6485,5957:-1013.91,-485.015,-430.528,-528.887,0,-478.013	1/2:101:0,51,50:0:0:51,50:1828,1752:-292.006,-142.912,-127.559,-149.448,0,-134.397	1/2:90:0,35,53:0:0:35,53:1244,1858:-252.616,-151.241,-140.705,-101.439,0,-85.484	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:13:0,6,7:0:0:6,7:216,234:-36.9151,-19.2788,-17.4726,-17.9843,0,-15.8771	1/2:229:0,100,128:0:0:100,128:3583,4553:-663.265,-371.049,-340.946,-292.213,0,-253.681	1/2:187:0,104,81:0:0:104,81:3706,2820:-531.464,-229.379,-198.072,-302.158,0,-277.775	1/1:80:0,80,0:0:0:80,0:2880,0:-259.436,-24.0824,0,-259.436,-24.0824,-259.436	.:.:.:.:.:.:.:.	1/1:126:0,126,0:0:0:126,0:4523,0:-407.235,-37.9298,0,-407.235,-37.9298,-407.235	1/1:51:0,50,0:0:0:50,0:1796,0:-161.563,-15.0515,0,-161.563,-15.0515,-161.563	1/2:213:0,111,100:0:0:111,100:3980,3505:-609.917,-285.295,-251.88,-324.709,0,-294.606	1/2:109:0,57,52:0:0:57,52:2048,1842:-317.482,-150.406,-133.247,-167.433,0,-151.779	1/2:95:0,47,48:0:0:47,48:1688,1690:-275.639,-137.936,-123.788,-138.059,0,-123.609	1/1:75:0,75,0:0:0:75,0:2669,0:-240.454,-22.5773,0,-240.454,-22.5773,-240.454	1/2:214:0,94,119:0:0:94,119:3357,4169:-612.862,-339.167,-310.87,-273.641,0,-237.818	1/2:211:0,95,111:0:0:95,111:3403,3856:-590.966,-313.432,-284.834,-277.579,0,-244.165	1/2:135:0,59,76:0:0:59,76:2108,2661:-388.732,-216.858,-199.097,-172.228,0,-149.35	1/1:164:0,161,1:0:0:161,1:5758,36:-518.011,-48.4658,0,-515.074,-45.5101,-514.773	1/2:234:0,114,117:0:0:114,117:4072,4106:-666.169,-334.175,-299.858,-332.014,0,-296.793	1/2:8:0,5,3:0:0:5,3:180,103:-23.404,-8.70651,-7.20136,-15.0469,0,-14.1438	1/1:207:0,207,0:0:0:207,0:7428,0:-668.562,-62.3132,0,-668.562,-62.3132,-668.562	1/1:46:0,46,0:0:0:46,0:1639,0:-147.798,-13.8474,0,-147.798,-13.8474,-147.798	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/2:192:0,98,93:0:0:98,93:3512,3246:-550.556,-264.12,-234.619,-286.538,0,-258.542	1/1:37:0,37,0:0:0:37,0:1328,0:-1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chr02	23518005	.	TGTTG	TGTTA	17371	PASS	AB=0.378138;ABP=408.938;AC=49;AF=0.260638;AN=188;AO=1196;CIGAR=4M1X;DP=6390;DPB=6390;DPRA=0.965291;EPP=2600.09;EPPR=11210;GTI=5;LEN=1;MEANALT=1.26923;MQM=58.7784;MQMR=59.3288;NS=94;NUMALT=1;ODDS=0.477734;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42767;QR=181957;RO=5161;RPL=0;RPP=2600.09;RPPR=11210;RPR=1196;RUN=1;SAF=0;SAP=2600.09;SAR=1196;SRF=0;SRP=11210;SRR=5161;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.878	0/0:109:108,0:108:3787:0:0:0,-32.5112,-340.525	0/1:154:49,105:49:1730:105:3751:-291.228,0,-109.326	0/0:106:105,1:105:3698:1:32:0,-28.8546,-329.804	0/1:48:39,9:39:1377:9:315:-14.1842,0,-109.761	0/1:46:29,16:29:1022:16:576:-38.2761,0,-78.3939	0/1:73:50,23:50:1762:23:811:-51.2694,0,-136.83	0/1:100:65,34:65:2286:34:1220:-79.7404,0,-175.84	0/0:86:83,0:83:2945:0:0:0,-24.9855,-264.402	0/0:90:90,0:90:3161:0:0:0,-27.0927,-284.705	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8504	0/1:33:14,19:14:494:19:676:-51.234,0,-34.8404	0/0:23:22,0:22:775:0:0:0,-6.62266,-69.7193	0/1:28:15,13:15:523:13:457:-33.03,0,-38.9704	0/1:26:13,13:13:466:13:453:-33.2684,0,-34.3117	0/1:32:12,20:12:426:20:716:-55.1348,0,-29.045	0/0:23:23,0:23:810:0:0:0,-6.92369,-73.1967	0/0:25:24,1:24:852:1:36:0,-3.92747,-73.2435	0/0:18:17,0:17:592:0:0:0,-5.11751,-53.2531	0/1:136:113,19:113:4016:19:684:-21.7478,0,-321.469	0/0:103:103,0:103:3630:0:0:0,-31.0061,-326.747	0/0:176:175,1:175:6128:1:36:0,-49.4078,-547.035	0/0:87:87,0:87:3047:0:0:0,-26.1896,-274.308	0/0:128:128,0:128:4533:0:0:0,-38.5318,-408.033	0/0:76:74,0:74:2646:0:0:0,-22.2762,-238.034	0/0:275:275,0:275:9687:0:0:0,-82.7832,-870.546	0/0:204:204,0:204:7216:0:0:0,-61.4101,-649.193	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.7388	0/1:191:138,52:138:4815:52:1864:-110.39,0,-375.477	0/1:76:46,30:46:1606:30:1076:-74.2746,0,-121.933	0/1:64:49,14:49:1728:14:500:-25.9613,0,-136.391	0/0:11:11,0:11:393:0:0:0,-3.31133,-35.6391	0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6078	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:11:11,0:11:389:0:0:0,-3.31133,-35.3479	0/1:12:3,9:3:108:9:324:-25.8574,0,-6.46281	0/1:115:57,58:57:2031:58:2084:-152.91,0,-148.005	0/1:102:79,23:79:2748:23:828:-44.1391,0,-216.776	0/0:22:22,0:22:781:0:0:0,-6.62266,-70.5271	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/0:72:72,0:72:2498:0:0:0,-21.6742,-224.686	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6393	0/1:111:69,42:69:2416:42:1508:-102.519,0,-184.274	0/1:29:14,15:14:499:15:525:-38.8425,0,-36.5157	0/1:28:16,12:16:574:12:428:-30.4234,0,-43.5655	0/0:71:71,0:71:2495:0:0:0,-21.3731,-224.688	0/1:67:43,24:43:1511:24:849:-56.5588,0,-116.063	0/1:119:89,28:89:3150:28:1008:-55.3966,0,-247.937	0/1:87:54,33:54:1884:33:1169:-79.2908,0,-143.639	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.009	0/1:131:87,44:87:3088:44:1580:-103.005,0,-238.426	1/1:2:0,2:0:0:2:72:-6.83588,-0.60206,0	0/0:93:93,0:93:3264:0:0:0,-27.9958,-293.88	0/0:51:51,0:51:1810:0:0:0,-15.3525,-163.109	0/1:22:14,8:14:497:8:288:-19.6447,0,-38.3353	0/1:68:53,15:53:1870:15:531:-27.6519,0,-148.087	0/0:23:22,1:22:761:1:36:0,-3.32586,-65.2103	0/1:4:2,1:2:72:1:36:-2.34028,0,-5.50953	0/1:31:13,18:13:463:18:648:-49.2482,0,-32.6657	0/1:45:26,18:26:922:18:648:-45.0505,0,-69.6913	0/0:76:76,0:76:2714:0:0:0,-22.8783,-244.346	0/0:21:21,0:21:743:0:0:0,-6.32163,-66.6281	0/0:167:167,0:167:5926:0:0:0,-50.272,-532.663	0/1:155:106,48:106:3719:48:1724:-108.612,0,-288.131	0/1:26:23,3:23:808:3:108:-2.24839,0,-65.2134	0/0:71:71,0:71:2505:0:0:0,-21.3731,-225.684	0/1:115:75,40:75:2655:40:1436:-94.9042,0,-204.56	0/1:80:47,33:47:1666:33:1183:-82.667,0,-126.055	0/1:8:6,2:6:213:2:72:-4.42848,0,-17.1081	0/1:53:30,18:30:1039:18:648:-43.8513,0,-79.0168	0/1:71:41,30:41:1450:30:1065:-74.6369,0,-109.296	0/0:20:20,0:20:693:0:0:0,-6.0206,-62.6904	0/0:112:112,0:112:3946:0:0:0,-33.7154,-355.188	0/1:30:19,8:19:673:8:288:-17.7816,0,-52.4112	0/0:161:161,0:161:5654:0:0:0,-48.4658,-508.765	0/0:161:161,0:161:5688:0:0:0,-48.4658,-511.665	0/1:85:42,43:42:1482:43:1548:-113.953,0,-108.076	0/1:50:32,18:32:1122:18:648:-43.5645,0,-86.2303	0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1292	0/0:103:102,0:102:3613:0:0:0,-30.7051,-324.367	0/1:68:51,17:51:1798:17:612:-34.943,0,-141.622	0/1:203:119,83:119:4200:83:2959:-205.181,0,-316.808	0/0:75:75,0:75:2657:0:0:0,-22.5772,-239.242	0/0:27:27,0:27:954:0:0:0,-8.12781,-86.1295	0/0:31:31,0:31:1078:0:0:0,-9.33193,-97.3176	0/1:54:22,32:22:770:32:1135:-86.1914,0,-53.2468	0/1:25:12,13:12:407:13:453:-33.5379,0,-29.328	0/1:47:20,27:20:701:27:963:-72.8375,0,-49.2272	0/0:29:28,0:28:994:0:0:0,-8.42884,-89.4226	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/1:42:17,25:17:589:25:900:-68.6754,0,-40.6913	0/1:37:13,24:13:460:24:864:-66.879,0,-30.5972	0/0:101:100,0:100:3538:0:0:0,-30.103,-318.131	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.664
chr02	23518034	.	C	T	107402	PASS	AB=0.615237;ABP=363.347;AC=139;AF=0.739362;AN=188;AO=5116;CIGAR=1X;DP=6327;DPB=6327;DPRA=34.0054;EPP=11112.3;EPPR=2626.15;GTI=6;LEN=1;MEANALT=1.03226;MQM=59.2373;MQMR=58.6772;NS=94;NUMALT=1;ODDS=0.0140742;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182244;QR=43201;RO=1208;RPL=5116;RPP=11112.3;RPPR=2626.15;RPR=0;RUN=1;SAF=0;SAP=11112.3;SAR=5116;SRF=0;SRP=2626.15;SRR=1208;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1188:-107.227,-9.93399,0	1/1:107:1,106:1:36:106:3758:-334.379,-28.6119,0	0/1:154:104,49:104:3744:49:1760:-111.92,0,-290.556	1/1:105:0,105:0:0:105:3689:-331.795,-31.6082,0	0/1:47:9,38:9:324:38:1368:-109.255,0,-15.3039	0/1:45:17,28:17:612:28:1004:-77.1291,0,-41.7971	0/1:73:23,50:23:824:50:1755:-136.183,0,-52.4403	0/1:98:33,65:33:1188:65:2332:-180.551,0,-77.5237	1/1:87:0,87:0:0:87:3083:-277.134,-26.1896,0	1/1:88:1,87:1:36:87:3094:-274.957,-22.8924,0	1/1:13:0,13:0:0:13:468:-42.4581,-3.91339,0	0/1:33:19,14:19:669:14:504:-35.694,0,-50.6	1/1:23:0,23:0:0:23:824:-74.4134,-6.92369,0	0/1:28:14,14:14:492:14:504:-37.2693,0,-36.1384	0/1:26:13,13:13:453:13:468:-34.4926,0,-33.2684	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4958	1/1:23:0,23:0:0:23:820:-74.0522,-6.92369,0	1/1:25:0,25:0:0:25:900:-81.1425,-7.52575,0	1/1:17:0,17:0:0:17:597:-53.9861,-5.11751,0	0/1:136:20,116:20:720:116:4161:-333.445,0,-24.1004	1/1:102:0,102:0:0:102:3668:-330.042,-30.7051,0	1/1:174:0,174:0:0:174:6192:-556.343,-52.3792,0	1/1:83:1,82:1:36:82:2907:-258.109,-21.3872,0	1/1:125:0,125:0:0:125:4413:-397.174,-37.6288,0	1/1:74:0,74:0:0:74:2630:-236.803,-22.2762,0	1/1:272:2,270:2:72:270:9650:-860.319,-75.0434,0	1/1:202:0,202:0:0:202:7196:-647.335,-60.8081,0	1/1:16:0,16:0:0:16:572:-51.6581,-4.81648,0	0/1:186:53,133:53:1900:133:4700:-366.311,0,-115.184	0/1:75:29,46:29:1044:46:1652:-126.279,0,-71.6976	0/1:64:14,50:14:492:50:1785:-141.061,0,-25.2855	1/1:11:0,11:0:0:11:377:-34.1861,-3.31133,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	0/1:12:9,3:9:309:3:108:-6.46281,0,-24.4922	0/1:117:60,57:60:2160:57:2033:-147.58,0,-159.087	0/1:100:23,77:23:824:77:2712:-214.073,0,-44.3803	1/1:22:0,22:0:0:22:777:-70.144,-6.62266,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69008	1/1:72:0,72:0:0:72:2569:-230.758,-21.6742,0	1/1:23:0,23:0:0:23:809:-73.1283,-6.92369,0	0/1:111:42,69:42:1504:69:2472:-189.311,0,-102.159	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5016	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7855	1/1:71:0,71:0:0:71:2533:-228.05,-21.3731,0	0/1:67:24,43:24:856:43:1525:-117.251,0,-57.1921	0/1:118:28,90:28:1000:90:3194:-251.907,0,-54.7274	0/1:84:31,52:31:1116:52:1868:-142.981,0,-75.3713	1/1:56:0,56:0:0:56:2016:-181.558,-16.8577,0	0/1:133:44,88:44:1550:88:3130:-241.211,0,-99.6493	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83588	1/1:93:0,93:0:0:93:3310:-297.956,-27.9958,0	1/1:51:0,51:0:0:51:1817:-163.738,-15.3525,0	0/1:22:8,14:8:288:14:492:-37.883,0,-19.6447	0/1:67:15,52:15:540:52:1868:-148.154,0,-28.7675	1/1:23:1,22:1:36:22:777:-66.6525,-3.32586,0	0/1:4:1,3:1:36:3:104:-8.37918,0,-2.39315	0/1:31:18,13:18:648:13:464:-32.737,0,-49.2482	0/1:45:18,27:18:640:27:957:-72.8917,0,-44.383	1/1:77:0,77:0:0:77:2772:-249.45,-23.1793,0	1/1:20:1,19:1:36:19:680:-57.3486,-2.42233,0	1/1:167:0,167:0:0:167:5974:-535.47,-50.272,0	0/1:155:50,105:50:1785:105:3703:-286.645,0,-114.139	0/1:26:3,23:3:108:23:824:-66.6565,0,-2.24839	1/1:70:0,70:0:0:70:2501:-225.309,-21.0721,0	0/1:115:41,74:41:1468:74:2622:-201.587,0,-97.7824	0/1:80:33,47:33:1169:47:1669:-126.323,0,-81.3669	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:53:23,30:23:820:30:1057:-79.4813,0,-57.8185	0/1:69:30,39:30:1068:39:1381:-103.675,0,-75.5254	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:109:0,109:0:0:109:3864:-347.735,-32.8123,0	0/1:30:11,19:11:392:19:684:-52.8561,0,-26.5214	1/1:160:0,160:0:0:160:5714:-513.994,-48.1648,0	1/1:159:0,159:0:0:159:5681:-510.933,-47.8638,0	0/1:84:42,42:42:1489:42:1497:-109.631,0,-108.979	0/1:49:16,33:16:576:33:1169:-90.721,0,-37.4245	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:102:0,102:0:0:102:3649:-327.881,-30.7051,0	0/1:68:17,51:17:608:51:1817:-143.337,0,-34.5816	0/1:202:83,119:83:2969:119:4227:-319.547,0,-206.433	1/1:71:0,71:0:0:71:2514:-226.324,-21.3731,0	1/1:27:0,27:0:0:27:968:-87.3924,-8.12781,0	1/1:31:0,31:0:0:31:1112:-100.26,-9.33193,0	0/1:53:31,22:31:1112:22:792:-55.5003,0,-84.4255	0/1:25:13,12:13:468:12:428:-31.1193,0,-34.8979	0/1:46:26,20:26:932:20:712:-50.4455,0,-70.3515	1/1:29:0,29:0:0:29:1025:-92.4909,-8.72987,0	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:40:25,15:25:896:15:521:-35.1751,0,-68.9168	0/1:36:25,11:25:888:11:387:-24.3289,0,-69.1468	1/1:100:0,100:0:0:100:3581:-322.271,-30.103,0	1/1:46:0,46:0:0:46:1656:-149.194,-13.8474,0
chr02	23519209	.	ACA	ACG	136088	PASS	AB=0.513053;ABP=9.69959;AC=139;AF=0.739362;AN=188;AO=6514;CIGAR=2M1X;DP=8740;DPB=8740;DPRA=93.9677;EPP=14087.2;EPPR=4782.42;GTI=2;LEN=1;MEANALT=1.2043;MQM=59.9748;MQMR=59.99;NS=94;NUMALT=1;ODDS=1.22141;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=231937;QR=77541;RO=2201;RPL=7;RPP=14087.2;RPPR=4782.42;RPR=6507;RUN=1;SAF=0;SAP=14148;SAR=6514;SRF=0;SRP=4782.42;SRR=2201;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:132:0,132:0:0:132:4688:-422.084,-39.736,0	0/1:98:47,51:47:1663:51:1810:-133.679,0,-120.455	1/1:212:0,208:0:0:208:7427:-668.164,-62.6142,0	0/1:60:22,38:22:792:38:1368:-105.359,0,-53.5439	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/1:109:47,62:47:1650:62:2203:-165.723,0,-115.972	0/1:184:91,93:91:3233:93:3304:-242.191,0,-235.803	1/1:93:0,88:0:0:88:3132:-281.76,-26.4906,0	1/1:150:1,148:1:36:148:5290:-472.709,-41.5401,0	1/1:34:0,34:0:0:34:1197:-108.033,-10.235,0	0/1:55:32,23:32:1104:23:796:-55.3983,0,-83.1067	1/1:55:0,55:0:0:55:1959:-176.585,-16.5567,0	0/1:57:24,33:24:834:33:1149:-86.5524,0,-58.2158	0/1:57:34,23:34:1206:23:828:-57.6854,0,-91.6868	0/1:39:17,22:17:612:22:784:-59.1437,0,-43.6733	1/1:75:0,75:0:0:75:2683:-241.714,-22.5773,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:182:80,102:80:2837:102:3630:-272.11,0,-200.781	1/1:122:0,122:0:0:122:4372:-393.653,-36.7257,0	1/1:155:0,155:0:0:155:5555:-500.073,-46.6597,0	1/1:48:1,47:1:36:47:1672:-147.169,-10.8512,0	1/1:134:0,134:0:0:134:4808:-432.874,-40.338,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:372:5,365:5:171:365:13013:-1155.26,-95.9711,0	1/1:206:0,206:0:0:206:7375:-663.797,-62.0122,0	1/1:30:0,30:0:0:30:1063:-95.9808,-9.0309,0	0/1:297:131,166:131:4632:166:5914:-442.965,0,-327.639	0/1:197:89,108:89:3119:108:3842:-286.656,0,-221.634	0/1:95:43,52:43:1521:52:1852:-138.362,0,-108.583	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:149:78,70:78:2781:70:2484:-178.939,0,-205.656	0/1:233:119,112:119:4157:112:3989:-289.303,0,-304.417	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:111:0,111:0:0:111:3954:-356.035,-33.4143,0	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	0/1:149:76,72:76:2703:72:2551:-185.057,0,-198.729	0/1:54:20,34:20:701:34:1220:-93.8512,0,-47.1565	0/1:52:33,19:33:1131:19:680:-45.8756,0,-86.4365	1/1:109:0,109:0:0:109:3862:-347.778,-32.8123,0	0/1:123:68,55:68:2415:55:1948:-138.569,0,-180.579	0/1:204:82,122:82:2847:122:4354:-330.624,0,-195.059	0/1:130:70,60:70:2498:60:2119:-151.845,0,-185.939	1/1:130:0,130:0:0:130:4668:-420.28,-39.1339,0	0/1:142:81,60:81:2833:60:2148:-150.782,0,-212.406	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:147:0,147:0:0:147:5255:-473.087,-44.2514,0	1/1:41:0,41:0:0:41:1434:-129.354,-12.3422,0	0/1:14:4,10:4:142:10:356:-28.1668,0,-8.91479	0/1:104:63,41:63:2246:41:1466:-100.929,0,-171.095	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:18:13,5:13:458:5:180:-11.1335,0,-36.1353	0/1:34:13,21:13:463:21:756:-58.1322,0,-31.7718	1/1:114:0,114:0:0:114:4057:-365.318,-34.3174,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:217:0,216:0:0:216:7714:-694.013,-65.0225,0	0/1:210:116,94:116:4073:94:3360:-239.401,0,-303.543	0/1:55:30,25:30:1057:25:892:-64.0429,0,-78.8843	1/1:101:0,101:0:0:101:3554:-320.07,-30.404,0	0/1:183:95,87:95:3348:87:3099:-224.149,0,-246.519	0/1:48:36,12:36:1275:12:432:-24.7718,0,-100.602	0/1:26:16,10:16:574:10:360:-24.9175,0,-44.1675	0/1:69:28,40:28:981:40:1414:-106.726,0,-67.7717	0/1:80:38,42:38:1336:42:1478:-109.231,0,-96.4559	1/1:29:0,29:0:0:29:1025:-92.5616,-8.72987,0	1/1:151:0,150:0:0:150:5340:-480.206,-45.1545,0	0/1:57:33,24:33:1170:24:856:-60.2024,0,-88.4486	1/1:188:0,188:0:0:188:6643:-597.957,-56.5936,0	1/1:143:0,143:0:0:143:5106:-459.596,-43.0473,0	0/1:119:47,72:47:1631:72:2584:-196.986,0,-111.251	0/1:120:52,68:52:1847:68:2420:-181.933,0,-130.385	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:123:0,122:0:0:122:4326:-389.156,-36.7257,0	0/1:105:53,52:53:1874:52:1856:-135.712,0,-137.329	0/1:249:98,151:98:3407:151:5342:-405.533,0,-231.89	1/1:79:0,79:0:0:79:2798:-252.061,-23.7814,0	1/1:51:0,51:0:0:51:1800:-162.28,-15.3525,0	1/1:96:0,96:0:0:96:3412:-307.294,-28.8989,0	0/1:119:49,70:49:1703:70:2457:-185.56,0,-117.729	0/1:25:12,13:12:422:13:459:-34.1183,0,-30.789	0/1:57:35,22:35:1240:22:773:-52.7308,0,-94.7454	1/1:52:0,52:0:0:52:1838:-165.699,-15.6536,0	0/1:24:11,13:11:376:13:464:-34.8728,0,-26.9427	0/1:44:16,26:16:545:26:924:-70.5166,0,-36.4093	0/1:59:41,18:41:1465:18:644:-40.5298,0,-114.385	1/1:133:0,133:0:0:133:4730:-425.862,-40.037,0	1/1:91:1,89:1:36:89:3172:-282.103,-23.8543,0
chr02	23534408	.	A	C	227565	PASS	AB=0.579881;ABP=384.273;AC=141;AF=0.75;AN=188;AO=10798;CIGAR=1X;DP=13700;DPB=13700;DPRA=0;EPP=23277.2;EPPR=6187.8;GTI=2;LEN=1;MEANALT=1.06383;MQM=59.9808;MQMR=59.9803;NS=94;NUMALT=1;ODDS=1.79885;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=383953;QR=103898;RO=2896;RPL=20;RPP=23277.2;RPPR=6187.8;RPR=10778;RUN=1;SAF=10798;SAP=23450.6;SAR=0;SRF=2896;SRP=6291.59;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1341:-120.989,-11.4391,0	1/1:234:1,233:1:36:233:8296:-743.01,-66.8427,0	0/1:166:64,102:64:2284:102:3599:-274.147,0,-155.851	1/1:319:3,316:3:104:316:11249:-1002.6,-86.3258,0	0/1:110:31,79:31:1116:79:2819:-220.836,0,-67.6384	0/1:56:22,34:22:784:34:1212:-92.5286,0,-54.0262	0/1:154:58,96:58:2088:96:3402:-260.038,0,-141.831	0/1:237:125,112:125:4484:112:3965:-285.696,0,-332.384	1/1:90:0,90:0:0:90:3182:-286.606,-27.0927,0	1/1:159:1,158:1:36:158:5605:-500.978,-44.2655,0	1/1:140:0,140:0:0:140:5004:-450.508,-42.1442,0	0/1:101:45,55:45:1620:55:1968:-146.932,0,-115.627	1/1:175:0,175:0:0:175:6235:-561.247,-52.6803,0	0/1:148:77,71:77:2768:71:2503:-180.969,0,-204.808	0/1:94:44,50:44:1584:50:1800:-133.985,0,-114.555	0/1:66:28,38:28:1004:38:1360:-102.833,0,-70.8079	1/1:114:0,114:0:0:114:4044:-364.149,-34.3174,0	1/1:105:0,105:0:0:105:3780:-340.397,-31.6082,0	1/1:89:0,89:0:0:89:3156:-284.267,-26.7917,0	0/1:303:109,194:109:3916:194:6903:-530.128,0,-261.42	1/1:229:0,229:0:0:229:8135:-732.171,-68.9359,0	1/1:132:0,132:0:0:132:4670:-420.465,-39.736,0	1/1:52:0,52:0:0:52:1847:-166.509,-15.6536,0	1/1:102:0,102:0:0:102:3617:-325.734,-30.7051,0	1/1:124:2,122:2:72:122:4353:-385.107,-30.491,0	1/1:474:1,473:1:36:473:16800:-1508.07,-139.09,0	1/1:415:0,415:0:0:415:14753:-1327.47,-124.927,0	1/1:56:0,56:0:0:56:1986:-179.013,-16.8577,0	0/1:381:97,284:97:3488:284:10117:-795.773,0,-199.437	0/1:210:85,124:85:3052:124:4407:-333.527,0,-211.634	0/1:132:58,74:58:2065:74:2644:-198.34,0,-146.37	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:28:0,28:0:0:28:965:-87.1588,-8.42884,0	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:243:101,142:101:3624:142:5070:-383.294,0,-253.214	0/1:208:92,115:92:3296:115:4100:-306.514,0,-234.181	1/1:135:0,135:0:0:135:4803:-432.427,-40.6391,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:178:0,177:0:0:177:6325:-568.982,-53.2823,0	1/1:74:0,74:0:0:74:2626:-236.586,-22.2762,0	0/1:149:53,96:53:1908:96:3416:-262.802,0,-127.144	0/1:86:49,37:49:1764:37:1320:-93.2134,0,-133.155	0/1:83:35,48:35:1256:48:1713:-129.468,0,-88.3598	1/1:109:0,109:0:0:109:3887:-350.025,-32.8123,0	0/1:203:89,114:89:3204:114:4045:-303.13,0,-227.473	0/1:286:92,194:92:3281:194:6892:-534.257,0,-209.414	0/1:185:85,100:85:3060:100:3529:-261.86,0,-219.937	1/1:299:0,299:0:0:299:10616:-955.359,-90.008,0	0/1:217:98,119:98:3516:119:4226:-315.198,0,-251.326	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	1/1:233:0,233:0:0:233:8299:-746.792,-70.14,0	1/1:96:0,96:0:0:96:3384:-304.774,-28.8989,0	0/1:29:17,12:17:608:12:417:-29.1317,0,-46.3222	0/1:172:69,103:69:2480:103:3649:-276.838,0,-171.676	1/1:44:0,44:0:0:44:1567:-141.321,-13.2453,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:33:10,23:10:360:23:828:-64.9101,0,-22.8103	0/1:94:40,54:40:1436:54:1923:-145.049,0,-101.241	1/1:188:0,188:0:0:188:6690:-602.178,-56.5936,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:354:0,354:0:0:354:12594:-1133.28,-106.565,0	0/1:296:103,192:103:3700:192:6803:-523.181,0,-244.037	0/1:120:48,72:48:1724:72:2567:-195.156,0,-119.322	1/1:154:0,154:0:0:154:5471:-492.52,-46.3586,0	0/1:209:94,115:94:3372:115:4088:-305.191,0,-240.78	0/1:124:61,62:61:2196:62:2174:-158.537,0,-160.519	0/1:65:24,41:24:864:41:1467:-112.758,0,-58.5156	0/1:109:66,43:66:2356:43:1535:-105.63,0,-179.169	0/1:143:74,69:74:2648:69:2468:-179.327,0,-195.519	1/1:64:0,64:0:0:64:2278:-205.282,-19.2659,0	1/1:215:0,215:0:0:215:7634:-687.095,-64.7215,0	0/1:136:39,97:39:1400:97:3459:-270.583,0,-85.3591	1/1:253:0,253:0:0:253:8963:-806.392,-76.1606,0	1/1:286:1,285:1:36:285:10109:-906.152,-82.4963,0	0/1:201:95,106:95:3388:106:3783:-280.154,0,-244.629	0/1:199:80,119:80:2860:119:4208:-318.998,0,-197.733	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	1/1:200:0,200:0:0:200:7132:-641.939,-60.206,0	0/1:145:58,87:58:2088:87:3073:-233.15,0,-144.54	0/1:307:141,166:141:5064:166:5906:-439.237,0,-363.487	1/1:169:0,169:0:0:169:6042:-543.883,-50.8741,0	1/1:108:0,108:0:0:108:3833:-345.168,-32.5112,0	1/1:114:1,113:1:36:113:4018:-358.212,-30.7191,0	0/1:143:74,69:74:2656:69:2472:-179.686,0,-196.238	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/1:98:47,51:47:1692:51:1808:-133.5,0,-123.045	1/1:97:0,97:0:0:97:3449:-310.62,-29.1999,0	0/1:128:61,67:61:2179:67:2395:-177.274,0,-157.844	0/1:169:73,96:73:2609:96:3428:-257.859,0,-184.182	0/1:63:40,23:40:1440:23:824:-55.5184,0,-110.933	1/1:144:0,144:0:0:144:5123:-461.212,-43.3483,0	1/1:147:1,146:1:36:146:5188:-463.462,-40.6531,0
chr02	23534414	.	G	A	47787.4	PASS	AB=0.421778;ABP=369.563;AC=47;AF=0.25;AN=188;AO=2919;CIGAR=1X;DP=13671;DPB=13671;DPRA=1.26043;EPP=6007.31;EPPR=22027.6;GTI=2;LEN=1;MEANALT=1.05455;MQM=59.9805;MQMR=59.9959;NS=94;NUMALT=1;ODDS=0.902575;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104601;QR=384302;RO=10746;RPL=39;RPP=6007.31;RPPR=22027.6;RPR=2880;RUN=1;SAF=2919;SAP=6341.54;SAR=0;SRF=10746;SRP=23337.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:235:235,0:235:8413:0:0:0,-70.742,-757.153	0/1:168:104,64:104:3713:64:2304:-157.047,0,-283.798	0/0:312:310,2:310:11068:2:72:0,-87.0846,-989.178	0/1:112:80,32:80:2833:32:1148:-69.9145,0,-221.491	0/1:56:34,22:34:1216:22:788:-54.3871,0,-92.8889	0/1:154:95,59:95:3384:59:2124:-145.07,0,-258.416	0/1:238:111,127:111:3968:127:4555:-338.47,0,-285.666	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:161:161,0:161:5753:0:0:0,-48.4658,-517.885	0/0:136:136,0:136:4875:0:0:0,-40.9401,-438.901	0/1:105:57,48:57:2039:48:1716:-123.117,0,-152.173	0/0:179:179,0:179:6415:0:0:0,-53.8844,-577.436	0/1:144:68,76:68:2448:76:2713:-201.064,0,-177.226	0/1:94:50,44:50:1788:44:1584:-114.555,0,-132.906	0/1:65:37,28:37:1332:28:1008:-71.4694,0,-100.615	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/0:106:106,0:106:3793:0:0:0,-31.9092,-341.566	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82	0/1:304:194,110:194:6968:110:3952:-264.357,0,-535.668	0/0:223:223,0:223:7968:0:0:0,-67.1297,-717.142	0/0:130:130,0:130:4644:0:0:0,-39.1339,-418.124	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.108	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:121:119,2:119:4247:2:72:0,-29.5879,-375.573	0/0:463:463,0:463:16562:0:0:0,-139.377,-1490.24	0/0:414:413,1:413:14776:1:36:0,-121.028,-1325.98	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:378:280,98:280:10036:98:3506:-201.961,0,-789.384	0/1:208:124,84:124:4456:84:3005:-208.066,0,-338.594	0/1:135:75,59:75:2675:59:2108:-149.383,0,-200.391	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	0/1:244:143,101:143:5105:101:3631:-253.542,0,-386.142	0/1:203:111,92:111:3988:92:3308:-236.827,0,-298	0/0:133:133,0:133:4767:0:0:0,-40.037,-429.186	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:181:181,0:181:6492:0:0:0,-54.4864,-584.363	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.977	0/1:151:97,54:97:3453:54:1927:-128.251,0,-265.527	0/1:86:38,48:38:1338:48:1724:-129.557,0,-94.8274	0/1:83:47,36:47:1688:36:1296:-91.9584,0,-127.221	0/0:108:108,0:108:3849:0:0:0,-32.5112,-346.606	0/1:201:113,88:113:4052:88:3156:-223.758,0,-304.36	0/1:287:191,96:191:6791:96:3444:-223.777,0,-524.867	0/1:183:99,84:99:3552:84:2985:-213.792,0,-264.799	0/0:294:293,1:293:10482:1:36:0,-84.9045,-939.696	0/1:216:117,99:117:4158:99:3540:-253.786,0,-309.38	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/0:236:236,0:236:8445:0:0:0,-71.0431,-759.681	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/1:30:13,17:13:464:17:612:-46.3825,0,-33.0666	0/1:169:100,69:100:3546:69:2472:-171.86,0,-268.474	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:36:26,10:26:913:10:345:-20.5437,0,-71.6469	0/1:97:56,41:56:1997:41:1465:-102.945,0,-150.802	0/0:187:187,0:187:6720:0:0:0,-56.2926,-604.872	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:353:352,1:352:12559:1:36:0,-102.665,-1126.54	0/1:295:191,104:191:6837:104:3738:-247.815,0,-526.594	0/1:121:73,48:73:2628:48:1724:-119.021,0,-200.342	0/0:157:157,0:157:5591:0:0:0,-47.2617,-503.31	0/1:211:115,96:115:4082:96:3418:-244.317,0,-304.048	0/1:124:62,61:62:2217:61:2192:-160.159,0,-162.406	0/1:67:42,25:42:1508:25:900:-61.152,0,-115.846	0/1:108:42,66:42:1489:66:2349:-179.119,0,-101.791	0/1:145:70,75:70:2516:75:2696:-199.234,0,-183.042	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/0:204:204,0:204:7274:0:0:0,-61.4101,-654.712	0/1:135:94,40:94:3372:40:1436:-88.8398,0,-262.998	0/0:251:250,0:250:8969:0:0:0,-75.2575,-806.826	0/0:289:289,0:289:10326:0:0:0,-86.9977,-929.263	0/1:200:105,95:105:3748:95:3401:-246.098,0,-277.315	0/1:204:124,80:124:4425:80:2843:-194.697,0,-337.011	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:196:194,0:194:6945:0:0:0,-58.3998,-624.754	0/1:146:88,58:88:3144:58:2082:-143.7,0,-239.236	0/1:313:170,143:170:6073:143:5127:-367.348,0,-452.45	0/0:169:169,0:169:6064:0:0:0,-50.8741,-545.861	0/0:108:108,0:108:3850:0:0:0,-32.5112,-346.694	0/0:118:117,1:117:4192:1:36:0,-31.9233,-373.863	0/1:143:69,74:69:2484:74:2658:-196.418,0,-180.765	0/1:36:18,18:18:640:18:644:-47.4535,0,-47.0922	0/1:97:49,48:49:1748:48:1721:-125.954,0,-128.404	0/0:96:95,1:95:3390:1:36:0,-25.3006,-301.716	0/1:129:67,62:67:2389:62:2222:-161.411,0,-176.433	0/1:167:94,73:94:3333:73:2626:-186.315,0,-249.914	0/1:65:25,40:25:900:40:1440:-110.331,0,-61.7541	0/0:143:143,0:143:5132:0:0:0,-43.0473,-462.02	0/0:144:143,1:143:5124:1:36:0,-39.75,-457.703
chr02	23534471	.	A	G	155980	PASS	AB=0.433583;ABP=243.285;AC=136;AF=0.723404;AN=188;AO=7549;CIGAR=1X;DP=11126;DPB=11126;DPRA=18.3066;EPP=16256.8;EPPR=7627.67;GTI=5;LEN=1;MEANALT=1.02198;MQM=59.5777;MQMR=59.9799;NS=94;NUMALT=1;ODDS=0.582532;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=270033;QR=127957;RO=3575;RPL=7533;RPP=16256.8;RPPR=7627.67;RPR=16;RUN=1;SAF=0;SAP=16395.5;SAR=7549;SRF=0;SRP=7766.02;SRR=3575;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:773:-69.8757,-6.62266,0	1/1:144:0,144:0:0:144:5131:-461.922,-43.3483,0	0/1:154:94,60:94:3368:60:2152:-147.568,0,-256.977	1/1:232:0,232:0:0:232:8313:-748.151,-69.839,0	0/1:56:32,24:32:1144:24:864:-61.2157,0,-86.4118	0/1:82:50,32:50:1792:32:1148:-78.8629,0,-136.878	0/1:185:77,107:77:2745:107:3800:-286.441,0,-191.542	0/1:263:128,135:128:4551:135:4824:-354.934,0,-330.583	1/1:110:0,110:0:0:110:3956:-356.086,-33.1133,0	1/1:88:0,88:0:0:88:3129:-281.828,-26.4906,0	1/1:77:0,77:0:0:77:2764:-248.987,-23.1793,0	0/1:119:63,55:63:2256:55:1957:-140.514,0,-167.422	1/1:105:0,105:0:0:105:3765:-338.944,-31.6082,0	0/1:72:34,38:34:1205:38:1364:-101.377,0,-87.0797	0/1:114:58,56:58:2073:56:2004:-146.156,0,-152.521	0/1:73:41,32:41:1476:32:1152:-82.0057,0,-111.161	1/1:109:0,109:0:0:109:3911:-352.105,-32.8123,0	1/1:82:0,82:0:0:82:2939:-264.691,-24.6845,0	1/1:45:0,45:0:0:45:1612:-145.334,-13.5464,0	0/1:231:147,84:147:5257:84:3003:-200.851,0,-403.727	1/1:128:0,128:0:0:128:4569:-411.226,-38.5318,0	1/1:125:0,125:0:0:125:4475:-402.918,-37.6288,0	1/1:42:0,42:0:0:42:1508:-135.739,-12.6433,0	1/1:40:0,40:0:0:40:1432:-129.014,-12.0412,0	1/1:59:0,59:0:0:59:2086:-187.956,-17.7608,0	1/1:414:0,414:0:0:414:14820:-1332.9,-124.626,0	1/1:372:1,371:1:36:371:13291:-1191.86,-108.385,0	1/1:55:0,55:0:0:55:1972:-177.736,-16.5567,0	0/1:531:367,164:367:13141:164:5866:-368.003,0,-1022.65	0/1:119:76,43:76:2705:43:1513:-100.627,0,-207.87	0/1:122:71,51:71:2540:51:1825:-127.672,0,-192.125	1/1:10:0,10:0:0:10:356:-32.3766,-3.0103,0	1/1:5:0,5:0:0:5:172:-15.8161,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:302:149,153:149:5328:153:5500:-404.203,0,-388.743	0/1:178:119,59:119:4284:59:2116:-137.101,0,-332.152	1/1:88:0,88:0:0:88:3160:-284.592,-26.4906,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:123:0,123:0:0:123:4393:-395.505,-37.0267,0	1/1:57:0,57:0:0:57:2052:-184.928,-17.1587,0	0/1:37:21,16:21:752:16:572:-40.6671,0,-56.8681	0/1:113:62,51:62:2232:51:1836:-131.502,0,-167.127	0/1:102:53,49:53:1896:49:1758:-127.77,0,-139.586	1/1:41:0,41:0:0:41:1476:-133.132,-12.3422,0	0/1:222:139,83:139:4984:83:2971:-200.733,0,-381.879	0/1:280:163,117:163:5840:117:4183:-292.329,0,-441.423	0/1:116:43,73:43:1548:73:2608:-199.925,0,-104.694	1/1:175:0,175:0:0:175:6255:-563.033,-52.6803,0	0/1:58:38,20:38:1368:20:707:-46.4921,0,-105.961	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:171:1,170:1:36:170:6090:-544.299,-47.8779,0	1/1:40:0,40:0:0:40:1440:-129.897,-12.0412,0	0/1:14:11,3:11:392:3:108:-5.86075,0,-31.4056	0/1:233:144,89:144:5140:89:3165:-214.901,0,-391.824	1/1:45:0,45:0:0:45:1599:-144.198,-13.5464,0	0/1:20:17,3:17:582:3:108:-4.05457,0,-46.6782	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:75:41,34:41:1476:34:1224:-87.8852,0,-110.559	1/1:169:1,168:1:36:168:6028:-539.007,-47.2758,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:261:0,261:0:0:261:9325:-839.129,-78.5688,0	0/1:164:106,58:106:3804:58:2088:-138.821,0,-293.188	0/1:84:48,36:48:1705:36:1296:-91.5092,0,-128.447	1/1:138:0,138:0:0:138:4910:-442.024,-41.5421,0	0/1:209:121,88:121:4325:88:3156:-221.325,0,-326.509	0/1:93:53,40:53:1893:40:1432:-101.161,0,-142.65	0/1:31:17,14:17:608:14:485:-34.6385,0,-45.7201	0/1:100:48,52:48:1728:52:1864:-137.861,0,-125.702	0/1:104:51,53:51:1819:53:1908:-140.687,0,-132.683	1/1:13:0,13:0:0:13:464:-42.0966,-3.91339,0	1/1:60:1,59:1:36:59:2102:-185.786,-14.4635,0	0/1:72:28,44:28:989:44:1576:-120.237,0,-67.6479	1/1:134:0,134:0:0:134:4764:-428.821,-40.338,0	1/1:194:0,194:0:0:194:6936:-624.275,-58.3998,0	0/1:184:97,87:97:3465:87:3108:-224.554,0,-256.663	0/1:192:108,84:108:3872:84:2988:-211.32,0,-290.876	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	1/1:177:0,177:0:0:177:6320:-568.815,-53.2823,0	0/1:192:121,71:121:4329:71:2539:-170.946,0,-331.986	0/1:274:169,105:169:6053:105:3762:-255.914,0,-462.389	1/1:124:1,123:1:36:123:4400:-392.555,-33.7294,0	1/1:100:0,100:0:0:100:3592:-322.007,-30.103,0	1/1:139:0,139:0:0:139:4988:-448.928,-41.8432,0	0/1:223:105,118:105:3768:118:4217:-312.554,0,-272.189	0/1:70:30,40:30:1076:40:1436:-108.448,0,-76.0808	0/1:125:54,71:54:1940:71:2526:-189.888,0,-137.247	1/1:88:0,88:0:0:88:3160:-284.571,-26.4906,0	0/1:57:31,26:31:1116:26:928:-66.6703,0,-83.593	0/1:91:42,49:42:1512:49:1718:-127.463,0,-108.981	0/1:108:75,33:75:2696:33:1188:-74.7127,0,-210.373	1/1:66:0,66:0:0:66:2360:-212.638,-19.868,0	1/1:150:0,150:0:0:150:5370:-483.277,-45.1545,0
chr02	23534492	.	G	C	153741	PASS	AB=0.434154;ABP=240.075;AC=136;AF=0.723404;AN=188;AO=7559;CIGAR=1X;DP=11148;DPB=11148;DPRA=18.3429;EPP=16417.2;EPPR=7783.4;GTI=5;LEN=1;MEANALT=1.06593;MQM=59.5693;MQMR=59.9821;NS=94;NUMALT=1;ODDS=0.516981;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268808;QR=128292;RO=3583;RPL=7559;RPP=16417.2;RPPR=7783.4;RPR=0;RUN=1;SAF=0;SAP=16417.2;SAR=7559;SRF=0;SRP=7783.4;SRR=3583;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:777:-70.2366,-6.62266,0	1/1:144:0,144:0:0:144:5114:-460.389,-43.3483,0	0/1:153:95,58:95:3408:58:2088:-142.098,0,-260.876	1/1:232:0,232:0:0:232:8257:-743.114,-69.839,0	0/1:56:32,24:32:1144:24:834:-58.5062,0,-86.4118	0/1:80:50,30:50:1781:30:1061:-71.7004,0,-136.488	0/1:185:77,108:77:2748:108:3853:-291.26,0,-191.872	0/1:265:129,136:129:4632:136:4834:-355.234,0,-337.268	1/1:109:0,109:0:0:109:3823:-344.168,-32.8123,0	1/1:86:0,86:0:0:86:3054:-275.077,-25.8886,0	1/1:75:0,75:0:0:75:2681:-241.519,-22.5773,0	0/1:117:64,53:64:2283:53:1906:-136.592,0,-170.511	1/1:106:0,106:0:0:106:3795:-341.505,-31.9092,0	0/1:73:34,39:34:1220:39:1381:-102.515,0,-88.1316	0/1:113:57,56:57:2040:56:2000:-146.1,0,-149.856	0/1:76:43,33:43:1539:33:1184:-83.9808,0,-115.924	1/1:107:0,107:0:0:107:3818:-343.76,-32.2102,0	1/1:81:0,81:0:0:81:2882:-259.557,-24.3834,0	1/1:45:0,45:0:0:45:1608:-144.974,-13.5464,0	0/1:234:150,84:150:5368:84:2989:-198.778,0,-412.811	1/1:128:0,128:0:0:128:4539:-408.524,-38.5318,0	1/1:127:0,127:0:0:127:4507:-405.793,-38.2308,0	1/1:40:0,40:0:0:40:1432:-129.171,-12.0412,0	1/1:40:0,40:0:0:40:1391:-125.319,-12.0412,0	1/1:61:0,61:0:0:61:2139:-192.733,-18.3628,0	1/1:421:0,421:0:0:421:15021:-1350.97,-126.734,0	1/1:373:1,372:1:36:372:13317:-1194.4,-108.686,0	1/1:55:0,55:0:0:55:1972:-177.736,-16.5567,0	0/1:535:365,170:365:13088:170:6085:-386.502,0,-1016.67	0/1:121:77,44:77:2756:44:1557:-103.984,0,-211.857	0/1:124:72,52:72:2572:52:1838:-127.717,0,-194.402	1/1:10:0,10:0:0:10:360:-32.7397,-3.0103,0	1/1:5:0,5:0:0:5:176:-16.1803,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:13:0,13:0:0:13:438:-39.7396,-3.91339,0	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:301:149,152:149:5344:152:5396:-395.152,0,-390.482	0/1:180:119,61:119:4264:61:2184:-142.616,0,-329.753	1/1:89:0,89:0:0:89:3183:-286.668,-26.7917,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:126:0,126:0:0:126:4490:-404.229,-37.9298,0	1/1:58:0,58:0:0:58:2073:-186.816,-17.4597,0	0/1:37:21,16:21:756:16:576:-41.0287,0,-57.2291	0/1:113:62,51:62:2232:51:1832:-131.142,0,-167.127	0/1:103:54,49:54:1922:49:1721:-124.125,0,-141.622	1/1:40:0,40:0:0:40:1425:-128.541,-12.0412,0	0/1:221:139,82:139:4984:82:2914:-195.904,0,-382.18	0/1:279:162,117:162:5800:117:4200:-294.159,0,-438.126	0/1:117:44,73:44:1572:73:2549:-194.395,0,-106.551	1/1:175:0,174:0:0:174:6187:-556.557,-52.3792,0	0/1:58:38,20:38:1360:20:690:-44.9552,0,-105.241	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:174:1,173:1:32:173:6152:-550.377,-49.1799,0	1/1:41:0,41:0:0:41:1430:-128.991,-12.3422,0	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/1:237:144,92:144:5152:92:3229:-219.406,0,-391.642	1/1:47:0,47:0:0:47:1673:-150.845,-14.1484,0	0/1:20:17,3:17:612:3:108:-4.05457,0,-49.3928	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:72:39,33:39:1400:33:1173:-84.1968,0,-104.625	1/1:166:1,165:1:36:165:5875:-525.243,-46.3727,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:266:0,266:0:0:266:9370:-843.181,-80.074,0	0/1:170:109,61:109:3912:61:2147:-142.317,0,-301.097	0/1:85:49,36:49:1729:36:1292:-90.848,0,-130.305	1/1:138:0,138:0:0:138:4860:-437.515,-41.5421,0	0/1:212:121,91:121:4320:91:3234:-227.437,0,-325.159	0/1:95:53,42:53:1908:42:1485:-105.216,0,-143.4	0/1:31:18,13:18:648:13:449:-31.3825,0,-49.32	0/1:101:46,55:46:1648:55:1934:-143.888,0,-118.205	0/1:102:51,51:51:1824:51:1817:-133.101,0,-133.736	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:60:1,59:1:36:59:2086:-184.346,-14.4635,0	0/1:72:28,44:28:1008:44:1565:-119.259,0,-69.3622	1/1:134:0,134:0:0:134:4740:-426.654,-40.338,0	1/1:195:0,195:0:0:195:6991:-629.14,-58.7009,0	0/1:184:99,85:99:3544:85:2984:-213.398,0,-263.779	0/1:190:108,82:108:3876:82:2914:-205.268,0,-291.837	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	1/1:174:0,174:0:0:174:6229:-560.623,-52.3792,0	0/1:193:120,72:120:4308:72:2531:-170.005,0,-329.886	0/1:270:166,103:166:5940:103:3681:-249.759,0,-453.371	1/1:119:1,118:1:36:118:4186:-373.218,-32.2243,0	1/1:99:0,98:0:0:98:3486:-312.115,-29.5009,0	1/1:137:0,137:0:0:137:4910:-442.003,-41.2411,0	0/1:222:103,119:103:3669:119:4238:-314.765,0,-263.584	0/1:71:30,41:30:1080:41:1472:-111.386,0,-76.1401	0/1:127:55,72:55:1971:72:2580:-194.138,0,-139.433	1/1:86:0,86:0:0:86:3092:-278.454,-25.8886,0	0/1:56:30,26:30:1076:26:917:-65.9777,0,-80.2952	0/1:92:42,49:42:1508:49:1726:-127.972,0,-108.407	0/1:110:77,33:77:2734:33:1188:-74.1106,0,-213.189	1/1:64:0,64:0:0:64:2255:-203.204,-19.2659,0	1/1:148:0,148:0:0:148:5278:-475,-44.5524,0
chr02	23727557	.	C	T	47416.9	PASS	AB=0.52183;ABP=24.9101;AC=47;AF=0.25;AN=188;AO=2764;CIGAR=1X;DP=9758;DPB=9758;DPRA=1.23712;EPP=6004.96;EPPR=15179.4;GTI=2;LEN=1;MEANALT=1.06;MQM=59.9616;MQMR=59.9416;NS=94;NUMALT=1;ODDS=0.746283;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98942;QR=250010;RO=6989;RPL=0;RPP=6004.96;RPPR=15179.4;RPR=2764;RUN=1;SAF=2764;SAP=6004.96;SAR=0;SRF=6989;SRP=15179.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:203:203,0:203:7280:0:0:0,-61.1091,-655.242	0/1:104:54,50:54:1944:50:1800:-130.975,0,-143.929	0/0:203:203,0:203:7264:0:0:0,-61.1091,-653.81	0/1:68:23,45:23:824:45:1612:-124.9,0,-54.0133	0/1:71:32,39:32:1148:39:1392:-104.206,0,-82.2567	0/1:79:31,48:31:1112:48:1724:-131.664,0,-76.6076	0/1:228:142,86:142:5096:86:3092:-209.872,0,-388.959	0/0:129:129,0:129:4620:0:0:0,-38.8329,-415.947	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.012	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.243	0/1:82:48,34:48:1719:34:1216:-85.0621,0,-130.31	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:58:28,30:28:1004:30:1076:-79.6931,0,-73.0862	0/1:90:41,49:41:1472:49:1752:-130.871,0,-105.683	0/1:50:23,27:23:824:27:968:-72.3859,0,-59.4318	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:235:107,128:107:3824:128:4592:-342.702,0,-273.571	0/0:145:145,0:145:5181:0:0:0,-43.6493,-466.427	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.892	0/0:144:144,0:144:5145:0:0:0,-43.3483,-463.191	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.472	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:446:445,0:445:15917:0:0:0,-133.958,-1431.84	0/0:196:196,0:196:7012:0:0:0,-59.0019,-631.144	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/1:281:123,158:123:4404:158:5619:-421.243,0,-311.942	0/1:139:57,82:57:2040:82:2925:-221.64,0,-142.029	0/1:141:66,75:66:2364:75:2684:-199.36,0,-170.57	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:213:101,110:101:3624:110:3925:-289.585,0,-262.484	0/1:230:113,116:113:4036:116:4160:-305.435,0,-294.277	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:111:111,0:111:3964:0:0:0,-33.4143,-356.952	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:173:88,85:88:3125:85:3048:-222.464,0,-229.242	0/1:73:30,43:30:1080:43:1544:-117.278,0,-75.4517	0/1:85:50,35:50:1784:35:1260:-88.1156,0,-133.892	0/0:153:153,0:153:5480:0:0:0,-46.0576,-493.326	0/1:165:93,71:93:3320:71:2532:-178.549,0,-249.438	0/1:153:68,85:68:2436:85:3040:-227.767,0,-173.438	0/1:161:75,86:75:2688:86:3092:-230.041,0,-193.699	0/0:157:156,1:156:5576:1:36:0,-43.6634,-498.361	0/1:141:83,58:83:2953:58:2068:-143.946,0,-223.558	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.505	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.671	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/1:11:7,4:7:237:4:144:-10.0023,0,-18.3477	0/1:125:72,53:72:2576:53:1896:-133.238,0,-194.355	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.907	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/1:107:42,65:42:1492:65:2321:-176.939,0,-102.364	0/0:108:107,1:107:3848:1:36:0,-28.913,-342.916	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:267:267,0:267:9530:0:0:0,-80.375,-857.601	0/1:198:97,101:97:3472:101:3612:-265.682,0,-253.087	0/1:84:43,41:43:1536:41:1476:-107.845,0,-113.247	0/0:73:73,0:73:2554:0:0:0,-21.9752,-230.11	0/1:209:90,119:90:3224:119:4272:-321.742,0,-227.464	0/1:106:40,66:40:1436:66:2360:-180.744,0,-97.6285	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:97:54,43:54:1940:43:1540:-109.693,0,-145.676	0/1:81:33,48:33:1188:48:1709:-129.71,0,-82.8452	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.108	0/1:75:34,41:34:1220:41:1472:-110.199,0,-87.5296	0/0:117:117,0:117:4169:0:0:0,-35.2205,-375.393	0/0:150:150,0:150:5376:0:0:0,-45.1545,-483.969	0/1:129:69,60:69:2472:60:2152:-155.069,0,-183.901	0/1:136:71,65:71:2536:65:2324:-168.48,0,-187.445	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:146:145,1:145:5161:1:36:0,-40.3521,-461.034	0/1:160:82,78:82:2914:78:2804:-204.434,0,-214.314	0/1:244:92,152:92:3269:152:5420:-414.476,0,-220.968	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.593	0/1:157:67,90:67:2408:90:3228:-243.479,0,-169.714	0/1:52:27,25:27:968:25:896:-65.3068,0,-71.782	0/1:89:38,51:38:1364:51:1836:-138.729,0,-96.269	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:28:9,19:9:324:19:680:-53.1003,0,-21.077	0/1:67:38,29:38:1364:29:1019:-71.8523,0,-102.892	0/1:66:17,49:17:608:49:1760:-138.816,0,-35.184	0/0:151:151,0:151:5392:0:0:0,-45.4555,-485.407	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155
chr02	23727577	.	C	G	143837	PASS	AB=0.476181;ABP=28.871;AC=141;AF=0.75;AN=188;AO=6873;CIGAR=1X;DP=9627;DPB=9627;DPRA=0;EPP=14668.1;EPPR=5918.21;GTI=2;LEN=1;MEANALT=1.06383;MQM=59.9408;MQMR=59.9541;NS=94;NUMALT=1;ODDS=0.231978;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245237;QR=97840;RO=2748;RPL=30;RPP=14668.1;RPPR=5918.21;RPR=6843;RUN=1;SAF=6873;SAP=14927.5;SAR=0;SRF=2748;SRP=5970.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:197:0,197:0:0:197:7025:-632.314,-59.3029,0	0/1:103:48,55:48:1702:55:1959:-145.579,0,-122.458	1/1:201:0,201:0:0:201:7160:-644.457,-60.507,0	0/1:67:44,23:44:1576:23:824:-54.3143,0,-121.963	0/1:72:41,31:41:1449:31:1112:-78.7172,0,-109.03	0/1:78:47,31:47:1672:31:1108:-76.5483,0,-127.287	0/1:226:83,143:83:2967:143:5102:-391.28,0,-199.23	1/1:125:0,125:0:0:125:4468:-402.274,-37.6288,0	1/1:121:0,121:0:0:121:4343:-391.043,-36.4246,0	1/1:49:0,49:0:0:49:1739:-156.792,-14.7505,0	0/1:79:34,45:34:1211:45:1608:-121.229,0,-85.5141	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	0/1:57:31,26:31:1112:26:935:-67.3107,0,-83.2326	0/1:88:48,40:48:1712:40:1432:-102.687,0,-127.875	0/1:51:27,24:27:968:24:856:-62.0086,0,-72.0848	1/1:70:0,70:0:0:70:2494:-224.713,-21.0721,0	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	0/1:234:128,106:128:4559:106:3785:-270.392,0,-340.037	1/1:145:0,145:0:0:145:5154:-463.994,-43.6494,0	1/1:121:0,121:0:0:121:4320:-388.977,-36.4246,0	1/1:145:0,145:0:0:145:5196:-467.779,-43.6494,0	1/1:60:0,60:0:0:60:2148:-193.584,-18.0618,0	1/1:73:0,73:0:0:73:2601:-234.337,-21.9752,0	1/1:433:0,433:0:0:433:15487:-1393.52,-130.346,0	1/1:193:0,193:0:0:193:6911:-622.055,-58.0988,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:280:158,122:158:5631:122:4376:-309.724,0,-422.625	0/1:139:83,56:83:2932:56:2016:-139.87,0,-222.271	0/1:140:75,65:75:2676:65:2332:-167.992,0,-198.942	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:213:112,101:112:3983:101:3598:-259.851,0,-294.54	0/1:227:112,115:112:3986:115:4079:-298.948,0,-290.407	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:1:0,1:0:0:1:21:-2.09995,-0.30103,0	1/1:113:0,113:0:0:113:4029:-362.798,-34.0164,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:168:81,85:81:2896:85:3013:-221.199,0,-210.685	0/1:71:43,28:43:1540:28:999:-68.8394,0,-117.52	0/1:84:35,49:35:1248:49:1736:-130.808,0,-87.336	1/1:151:0,151:0:0:151:5403:-486.4,-45.4555,0	0/1:164:71,93:71:2540:93:3336:-251.088,0,-179.479	0/1:151:84,67:84:2951:67:2396:-170.442,0,-220.364	0/1:158:83,75:83:2953:75:2672:-193.163,0,-218.44	1/1:155:1,154:1:27:154:5524:-494.58,-43.9599,0	0/1:136:55,81:55:1940:81:2887:-219.127,0,-133.934	0/1:6:2,4:2:72:4:144:-11.505,0,-5.03054	1/1:109:0,109:0:0:109:3886:-349.932,-32.8123,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:120:51,69:51:1827:69:2480:-187.223,0,-128.582	1/1:28:0,28:0:0:28:989:-89.3197,-8.42884,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:15:9,6:9:320:6:207:-14.4514,0,-24.6269	0/1:110:68,42:68:2423:42:1478:-100.198,0,-185.212	1/1:104:1,103:1:36:103:3695:-329.153,-27.7088,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:261:0,261:0:0:261:9301:-836.997,-78.5688,0	0/1:196:100,96:100:3540:96:3427:-249.641,0,-259.808	0/1:82:40,42:40:1427:42:1468:-107.727,0,-104.042	1/1:69:0,69:0:0:69:2401:-216.348,-20.7711,0	0/1:209:119,90:119:4248:90:3208:-226.026,0,-319.585	0/1:106:65,41:65:2295:41:1457:-99.5148,0,-174.852	0/1:15:7,8:7:248:8:284:-21.3879,0,-18.1487	0/1:96:44,52:44:1584:52:1850:-137.88,0,-113.953	0/1:81:48,33:48:1701:33:1188:-82.8452,0,-128.987	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:59:0,59:0:0:59:2107:-189.896,-17.7608,0	0/1:77:42,35:42:1496:35:1252:-89.8058,0,-111.755	1/1:113:0,113:0:0:113:4027:-362.62,-34.0164,0	1/1:147:0,147:0:0:147:5241:-471.828,-44.2514,0	0/1:127:59,68:59:2095:68:2423:-180.095,0,-150.573	0/1:133:62,70:62:2212:70:2449:-180.56,0,-159.249	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:143:1,142:1:36:142:5075:-453.296,-39.449,0	0/1:161:78,83:78:2792:83:2945:-216.817,0,-203.055	0/1:241:151,90:151:5366:90:3228:-218.183,0,-410.527	1/1:104:0,104:0:0:104:3700:-333.201,-31.3071,0	1/1:65:0,65:0:0:65:2322:-209.24,-19.567,0	1/1:104:0,102:0:0:102:3624:-326.065,-30.7051,0	0/1:155:91,63:91:3259:63:2252:-156.225,0,-246.811	0/1:52:25,27:25:900:27:963:-71.3318,0,-65.6675	0/1:92:53,39:53:1877:39:1385:-97.2521,0,-141.512	1/1:73:0,73:0:0:73:2591:-233.439,-21.9752,0	0/1:29:20,9:20:716:9:324:-20.776,0,-56.0378	0/1:68:30,38:30:1067:38:1360:-101.801,0,-75.8696	0/1:67:50,17:50:1788:17:612:-35.2444,0,-141.034	1/1:147:0,147:0:0:147:5243:-472.001,-44.2514,0	1/1:108:0,108:0:0:108:3846:-346.338,-32.5112,0
chr02	23765303	.	C	T	42184.7	PASS	AB=0.548496;ABP=93.3653;AC=46;AF=0.247312;AN=186;AO=2434;CIGAR=1X;DP=7919;DPB=7919;DPRA=1.44307;EPP=5288.37;EPPR=11604.8;GTI=5;LEN=1;MEANALT=1.09615;MQM=59.6993;MQMR=59.9881;NS=93;NUMALT=1;ODDS=0.312794;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87131;QR=195527;RO=5478;RPL=0;RPP=5288.37;RPPR=11630.6;RPR=2434;RUN=1;SAF=2434;SAP=5288.37;SAR=0;SRF=5475;SRP=11872.3;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:286:286,0:286:10206:0:0:0,-86.0946,-918.472	0/1:123:64,58:64:2283:58:2073:-149.743,0,-168.646	0/0:92:92,0:92:3282:0:0:0,-27.6948,-295.599	0/1:65:32,33:32:1148:33:1175:-86.49,0,-84.0629	0/1:51:14,37:14:504:37:1328:-104.47,0,-30.3456	0/1:96:54,42:54:1915:42:1508:-107.111,0,-143.728	0/1:173:66,107:66:2360:107:3835:-292.996,0,-160.58	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.113	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:50:50,0:50:1775:0:0:0,-15.0515,-160.032	0/1:44:19,25:19:675:25:896:-67.6938,0,-47.8316	0/0:45:44,0:44:1576:0:0:0,-13.2453,-141.772	0/1:78:33,45:33:1176:45:1620:-122.61,0,-82.6674	0/1:69:44,25:44:1572:25:900:-60.5453,0,-121.001	0/1:37:17,19:17:604:19:684:-50.6888,0,-43.494	0/0:82:82,0:82:2926:0:0:0,-24.6845,-263.574	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:185:65,120:65:2323:120:4299:-331.356,0,-153.639	0/0:128:128,0:128:4587:0:0:0,-38.5318,-412.994	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.646	0/0:84:81,2:81:2887:2:72:0,-18.5086,-253.23	0/0:69:69,0:69:2424:0:0:0,-20.7711,-218.415	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:188:188,0:188:6716:0:0:0,-56.5936,-604.517	0/0:178:178,0:178:6355:0:0:0,-53.5833,-572.042	0/0:37:37,0:37:1307:0:0:0,-11.1381,-117.931	0/1:222:88,134:88:3144:134:4816:-366.755,0,-216.357	0/1:328:159,169:159:5673:169:6047:-445.577,0,-411.952	0/1:147:44,103:44:1572:103:3671:-286.337,0,-97.5202	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:141:70,71:70:2512:71:2552:-187.484,0,-183.887	0/1:95:57,38:57:2036:38:1364:-94.443,0,-154.914	0/0:91:91,0:91:3254:0:0:0,-27.3937,-293.08	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:155:155,0:155:5532:0:0:0,-46.6596,-498.007	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:161:67,94:67:2388:94:3355:-253.687,0,-166.712	0/1:99:46,53:46:1631:53:1899:-141.38,0,-117.276	0/1:59:30,29:30:1068:29:1044:-76.5117,0,-78.6713	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:149:73,76:73:2594:76:2698:-198.161,0,-188.855	0/1:179:95,84:95:3378:84:3002:-216.514,0,-250.352	0/1:75:32,43:32:1136:43:1531:-115.474,0,-79.9716	0/0:134:133,1:133:4760:1:36:0,-36.7397,-424.959	0/1:58:20,37:20:720:37:1324:-102.077,0,-47.7434	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:106:106,0:106:3780:0:0:0,-31.9092,-340.4	0/0:71:70,1:70:2483:1:36:0,-17.7749,-220.125	0/1:7:5,2:5:180:2:68:-4.34705,0,-14.4449	0/1:131:61,70:61:2188:70:2503:-185.945,0,-157.751	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2511	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:71:37,34:37:1320:34:1216:-88.3549,0,-97.7288	0/0:85:83,2:83:2976:2:72:0,-18.7508,-261.236	.:.:.:.:.:.:.:.	0/0:182:180,1:180:6460:1:36:0,-51.248,-577.83	0/1:144:71,73:71:2527:73:2612:-191.968,0,-184.332	0/1:62:27,35:27:968:35:1260:-95.037,0,-68.7735	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/1:182:98,84:98:3499:84:2980:-213.626,0,-260.333	0/1:70:10,60:10:360:60:2160:-173.592,0,-11.6722	0/1:25:11,14:11:396:14:504:-38.1631,0,-28.457	0/1:46:24,22:24:855:22:779:-56.5733,0,-63.4228	0/1:71:34,37:34:1224:37:1332:-98.8037,0,-89.0939	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.2235	0/1:82:37,45:37:1312:45:1616:-121.045,0,-93.6688	0/0:137:136,0:136:4864:0:0:0,-40.9401,-437.554	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842	0/1:146:55,91:55:1956:91:3267:-250.236,0,-132.365	0/1:134:54,80:54:1940:80:2859:-217.192,0,-134.538	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.317	0/1:114:57,57:57:2044:57:2039:-149.453,0,-149.914	0/1:117:48,69:48:1711:69:2476:-187.861,0,-119.054	0/0:76:76,0:76:2702:0:0:0,-22.8783,-243.424	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:88:88,0:88:3139:0:0:0,-26.4906,-282.736	0/1:114:54,60:54:1936:60:2156:-159.976,0,-140.199	0/1:36:19,17:19:675:17:606:-44.0204,0,-50.2399	0/1:58:30,28:30:1072:28:1004:-73.2161,0,-79.3327	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:39:11,28:11:396:28:1008:-79.2962,0,-24.2426	0/1:62:33,29:33:1167:29:1031:-74.4342,0,-86.6725	0/1:54:17,37:17:600:37:1314:-102.298,0,-38.0736	0/0:142:141,1:141:5021:1:36:0,-39.148,-448.44	0/0:94:94,0:94:3351:0:0:0,-28.2968,-301.807
chr02	23765326	.	CTC	CTT,ATT	365855	PASS	AB=0.452666,0.544343;ABP=152.665,134.35;AC=141,47;AF=0.75,0.25;AN=188;AO=9395,4201;CIGAR=2M1X,1X1M1X;DP=13635;DPB=13637.7;DPRA=0,1.64924;EPP=20395.3,9125.37;EPPR=13.8677;GTI=5;LEN=1,3;MEANALT=1.96809,2.44068;MQM=59.9906,59.7872;MQMR=60;NS=94;NUMALT=2;ODDS=0.528985;PAIRED=0,0;PAIREDR=0;PAO=0.5,7.5;PQA=18,270;PQR=0;PRO=0;QA=334812,145786;QR=150;RO=5;RPL=5280,2462;RPP=316.707,273.206;RPPR=3.44459;RPR=4115,1739;RUN=1,1;SAF=5281,2462;SAP=317.785,273.206;SAR=4114,1739;SRF=2;SRP=3.44459;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:98:0,98,0:0:0:98,0:3498,0:-315.03,-29.5009,0,-315.03,-29.5009,-315.03	1/1:288:0,285,1:0:0:285,1:10121,36:-910.505,-85.7936,0,-907.567,-82.8378,-907.266	1/2:236:0,117,118:0:0:117,118:4156,4114:-673.265,-334.616,-299.396,-338.72,0,-303.198	1/1:196:0,196,0:0:0:196,0:7012,0:-631.144,-59.0019,0,-631.144,-59.0019,-631.144	1/2:119:0,56,63:0:0:56,63:1987,2178:-339.215,-177.319,-160.462,-162.246,0,-143.281	1/2:92:0,33,58:0:0:33,58:1180,1999:-258.577,-162.355,-152.421,-96.2143,0,-78.7546	1/2:135:0,71,64:0:0:71,64:2517,2253:-388.818,-183.765,-162.392,-205.406,0,-186.14	1/2:243:0,89,148:0:0:89,148:3167,5135:-675.513,-417.404,-390.612,-258.176,0,-213.624	1/1:186:0,185,1:0:0:185,1:6584,20:-592.443,-55.6906,0,-590.945,-53.9916,-590.644	1/1:125:0,124,0:0:0:124,0:4441,0:-399.5,-37.3277,0,-399.5,-37.3277,-399.5	1/1:93:0,93,0:0:0:93,0:3310,0:-298.119,-27.9958,0,-298.119,-27.9958,-298.119	1/2:160:1,66,93:1:36:66,93:2319,3229:-447.977,-259.527,-242.596,-185.803,0,-160.745	1/1:125:0,125,0:0:0:125,0:4475,0:-402.92,-37.6288,0,-402.92,-37.6288,-402.92	1/2:140:0,69,71:0:0:69,71:2459,2468:-401.445,-201.004,-180.233,-200.793,0,-179.42	1/2:149:0,79,70:0:0:79,70:2828,2432:-428.686,-198.06,-174.279,-230.978,0,-209.905	1/2:102:0,43,57:0:0:43,57:1536,1971:-285.377,-160.141,-147.196,-125.229,0,-108.07	1/1:91:0,91,0:0:0:91,0:3251,0:-292.811,-27.3937,0,-292.811,-27.3937,-292.811	1/1:72:0,72,0:0:0:72,0:2554,0:-230.11,-21.6742,0,-230.11,-21.6742,-230.11	1/1:66:0,66,0:0:0:66,0:2355,0:-212.208,-19.868,0,-212.208,-19.868,-212.208	1/2:286:1,108,177:1:34:108,177:3866,6133:-810.635,-495.666,-465.913,-312.525,0,-262.001	1/1:209:0,209,0:0:0:209,0:7487,0:-673.871,-62.9153,0,-673.871,-62.9153,-673.871	1/1:74:0,73,0:0:0:73,0:2597,0:-233.746,-21.9752,0,-233.746,-21.9752,-233.746	1/1:149:0,147,2:0:0:147,2:5211,72:-468.772,-44.2514,0,-462.897,-38.0167,-462.295	1/1:113:0,113,0:0:0:113,0:4052,0:-364.867,-34.0164,0,-364.867,-34.0164,-364.867	1/1:151:0,150,1:0:0:150,1:5357,28:-481.983,-45.1545,0,-479.765,-42.6558,-479.464	1/1:305:0,303,1:0:0:303,1:10808,21:-972.341,-91.2121,0,-970.753,-89.6981,-970.452	1/1:323:0,322,0:0:0:322,0:11515,0:-1035.97,-96.9317,0,-1035.97,-96.9317,-1035.97	1/1:67:0,67,0:0:0:67,0:2404,0:-216.616,-20.169,0,-216.616,-20.169,-216.616	1/2:342:0,128,214:0:0:128,214:4569,7420:-975.932,-603.441,-564.909,-372.844,0,-308.424	1/2:359:0,168,190:0:0:168,190:6020,6650:-1032.08,-541.103,-490.53,-491.05,0,-433.854	1/2:191:0,63,128:0:0:63,128:2238,4388:-538.927,-356.56,-337.595,-182.718,0,-144.186	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:12:0,12,0:0:0:12,0:419,0:-38.0427,-3.61236,0,-38.0427,-3.61236,-38.0427	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:9:0,8,1:0:0:8,1:280,36:-26.0696,-3.29724,-0.889005,-23.1311,0,-22.83	1/2:314:0,163,149:0:0:163,149:5812,5228:-899.334,-425.561,-376.493,-473.874,0,-429.021	1/2:132:0,76,56:0:0:76,56:2705,1885:-373.523,-153.051,-130.173,-220.816,0,-203.959	1/1:139:0,139,0:0:0:139,0:4881,0:-439.419,-41.8432,0,-439.419,-41.8432,-439.419	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:211:0,210,1:0:0:210,1:7522,28:-676.739,-63.2163,0,-674.52,-60.7176,-674.219	1/1:63:0,63,0:0:0:63,0:2224,0:-200.423,-18.9649,0,-200.423,-18.9649,-200.423	1/2:292:0,130,162:0:0:130,162:4635,5580:-831.328,-453.499,-414.365,-378.121,0,-329.354	1/2:156:0,72,84:0:0:72,84:2565,2906:-445.547,-236.474,-214.799,-209.424,0,-184.138	1/2:116:0,59,56:0:0:59,56:2112,1942:-330.178,-157.941,-140.18,-172.336,0,-155.479	1/1:124:0,123,1:0:0:123,1:4396,36:-395.454,-37.0267,0,-392.516,-33.7294,-392.215	1/2:204:0,96,107:0:0:96,107:3397,3739:-580.801,-304.107,-275.208,-276.795,0,-244.584	1/2:278:0,144,134:0:0:144,134:5135,4696:-800.687,-382.096,-338.748,-418.585,0,-378.247	1/2:132:0,56,75:0:0:56,75:1997,2629:-376.702,-213.911,-197.053,-162.785,0,-140.208	1/1:178:0,177,1:0:0:177,1:6313,36:-567.902,-53.2823,0,-564.965,-49.9851,-564.664	1/2:181:0,72,109:0:0:72,109:2588,3759:-516.29,-305.149,-283.475,-211.494,0,-178.682	1/2:10:0,3,7:0:0:3,7:108,241:-28.735,-19.918,-19.0149,-9.17208,0,-7.06487	1/1:153:0,153,0:0:0:153,0:5418,0:-487.753,-46.0576,0,-487.753,-46.0576,-487.753	1/1:90:0,88,1:0:0:88,1:3160,28:-284.357,-26.4906,0,-282.139,-24.2569,-281.838	1/2:8:0,5,3:0:0:5,3:180,103:-23.399,-8.70145,-7.1963,-15.0469,0,-14.1438	1/2:235:0,109,125:0:0:109,125:3882,435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chr02	23765347	.	G	T	93738.6	PASS	AB=0.540061;ABP=107.575;AC=47;AF=0.25;AN=188;AO=4058;CIGAR=1X;DP=13328;DPB=13328;DPRA=1.3333;EPP=8771.47;EPPR=19976.5;GTI=5;LEN=1;MEANALT=1.07692;MQM=59.8263;MQMR=59.9872;NS=94;NUMALT=1;ODDS=0.549716;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144270;QR=329597;RO=9266;RPL=2322;RPP=186.765;RPPR=251.631;RPR=1736;RUN=1;SAF=2317;SAP=180.547;SAR=1741;SRF=5131;SRP=235.488;SRR=4135;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:100:100,0:100:3567:0:0:0,-30.103,-321.238	0/0:280:280,0:280:9900:0:0:0,-84.2884,-890.95	0/1:231:119,112:119:4245:112:3992:-289.931,0,-312.691	0/0:189:189,0:189:6709:0:0:0,-56.8947,-603.889	0/1:117:57,60:57:2029:60:2140:-157.647,0,-147.66	0/1:92:34,58:34:1193:58:2063:-158.238,0,-79.9784	0/1:132:68,64:68:2423:64:2264:-164.28,0,-178.59	0/1:237:89,148:89:3104:148:5265:-402.49,0,-208.244	0/0:180:180,0:180:6416:0:0:0,-54.1854,-577.529	0/0:123:123,0:123:4384:0:0:0,-37.0267,-394.733	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:157:65,92:65:2313:92:3289:-248.947,0,-161.167	0/0:122:122,0:122:4358:0:0:0,-36.7257,-392.394	0/1:134:64,69:64:2246:69:2467:-181.887,0,-162.004	0/1:147:78,69:78:2804:69:2461:-177.487,0,-208.348	0/1:102:44,58:44:1576:58:2056:-154.598,0,-111.427	0/0:91:91,0:91:3230:0:0:0,-27.3937,-290.923	0/0:74:74,0:74:2620:0:0:0,-22.2762,-236.047	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/1:272:107,165:107:3809:165:5830:-442.928,0,-261.128	0/0:207:207,0:207:7297:0:0:0,-62.3132,-656.745	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:146:144,2:144:5163:2:72:0,-37.1137,-457.972	0/0:112:112,0:112:3987:0:0:0,-33.7154,-359.022	0/0:151:151,0:151:5387:0:0:0,-45.4555,-484.96	0/0:290:290,0:290:10333:0:0:0,-87.2987,-929.896	0/0:318:318,0:318:11326:0:0:0,-95.7275,-1019.23	0/0:65:65,0:65:2309:0:0:0,-19.5669,-208.069	0/1:336:127,209:127:4523:209:7480:-572.077,0,-306.093	0/1:346:168,178:168:5968:178:6312:-463.996,0,-433.071	0/1:182:63,119:63:2240:119:4228:-325.897,0,-147.077	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:307:159,148:159:5697:148:5222:-377.703,0,-420.429	0/1:126:73,52:73:2583:52:1852:-128.957,0,-194.732	0/0:129:129,0:129:4568:0:0:0,-38.8329,-410.861	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:212:212,0:212:7520:0:0:0,-63.8184,-676.846	0/0:63:63,0:63:2230:0:0:0,-18.9649,-200.963	0/1:287:129,158:129:4584:158:5584:-416.284,0,-326.331	0/1:154:71,83:71:2544:83:2947:-219.091,0,-182.852	0/1:111:56,55:56:1991:55:1965:-143.707,0,-146.049	0/0:124:124,0:124:4406:0:0:0,-37.3277,-396.712	0/1:197:95,102:95:3400:102:3638:-268.115,0,-246.912	0/1:273:143,130:143:5078:130:4641:-335.651,0,-374.984	0/1:127:56,71:56:1984:71:2533:-189.99,0,-140.601	0/0:177:176,1:176:6281:1:36:0,-49.684,-561.786	0/1:176:71,105:71:2540:105:3677:-277.718,0,-175.87	0/1:10:3,7:3:104:7:252:-20.0187,0,-6.69251	0/0:148:148,0:148:5291:0:0:0,-44.5524,-476.325	0/0:89:88,1:88:3110:1:32:0,-23.5924,-276.929	0/1:9:6,3:6:212:3:108:-7.35746,0,-16.7155	0/1:240:113,127:113:4030:127:4526:-335.188,0,-290.641	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:12:7,5:7:233:5:180:-12.9397,0,-17.6819	0/1:152:76,76:76:2695:76:2704:-197.801,0,-197.039	0/0:156:154,2:154:5515:2:72:0,-40.124,-489.638	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:231:230,1:230:8137:1:36:0,-65.9397,-728.754	0/1:224:109,115:109:3872:115:4098:-301.563,0,-281.236	0/1:125:60,64:60:2143:64:2259:-165.879,0,-154.429	0/0:120:120,0:120:4230:0:0:0,-36.1236,-380.88	0/1:246:138,108:138:4902:108:3841:-271.815,0,-367.281	0/1:154:31,123:31:1108:123:4342:-344.59,0,-53.6724	0/1:49:26,23:26:928:23:811:-58.558,0,-69.0878	0/1:61:32,29:32:1140:29:1030:-74.6418,0,-84.5464	0/1:104:55,48:55:1964:48:1712:-122.998,0,-145.669	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:74:74,0:74:2619:0:0:0,-22.2762,-235.87	0/1:140:64,76:64:2264:76:2724:-203.259,0,-161.848	0/0:254:254,0:254:9047:0:0:0,-76.4616,-814.211	0/0:168:168,0:168:5961:0:0:0,-50.573,-536.599	0/1:236:102,134:102:3602:134:4783:-359.544,0,-253.344	0/1:222:100,122:100:3567:122:4346:-324.473,0,-254.41	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:171:171,0:171:6081:0:0:0,-51.4761,-547.395	0/1:174:92,82:92:3285:82:2883:-207.311,0,-243.489	0/1:345:148,197:148:5264:197:7017:-527.725,0,-370.045	0/0:132:132,0:132:4698:0:0:0,-39.736,-422.981	0/0:104:104,0:104:3716:0:0:0,-31.3071,-334.642	0/0:135:135,0:135:4802:0:0:0,-40.639,-432.338	0/1:225:101,124:101:3567:124:4406:-328.881,0,-253.507	0/1:49:24,25:24:856:25:896:-66.1902,0,-62.6106	0/1:112:61,51:61:2162:51:1832:-131.445,0,-161.128	0/0:131:131,0:131:4684:0:0:0,-39.4349,-421.721	0/1:70:31,39:31:1116:39:1379:-103.336,0,-79.6796	0/1:151:73,78:73:2600:78:2786:-205.509,0,-188.791	0/1:134:48,86:48:1711:86:3057:-235.014,0,-113.937	0/0:196:196,0:196:6966:0:0:0,-59.0019,-627.005	0/0:194:194,0:194:6938:0:0:0,-58.3998,-624.486
chr02	23797887	.	A	G	132427	PASS	AB=0.485754;ABP=11.9817;AC=140;AF=0.744681;AN=188;AO=6471;CIGAR=1X;DP=9098;DPB=9098;DPRA=0;EPP=14045.9;EPPR=5696.61;GTI=2;LEN=1;MEANALT=1.05319;MQM=59.9818;MQMR=59.9908;NS=94;NUMALT=1;ODDS=0.612078;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229807;QR=93439;RO=2622;RPL=0;RPP=14054.6;RPPR=5687.93;RPR=6471;RUN=1;SAF=1;SAP=14045.9;SAR=6470;SRF=1;SRP=5687.93;SRR=2621;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	1/1:168:0,168:0:0:168:5918:-532.734,-50.573,0	0/1:285:115,170:115:4120:170:6059:-459.619,0,-285.191	1/1:225:0,225:0:0:225:8025:-722.27,-67.7318,0	0/1:58:29,29:29:1040:29:1040:-76.4546,0,-76.4546	0/1:36:19,17:19:669:17:612:-44.5764,0,-49.6969	0/1:175:90,85:90:3202:85:3006:-218.089,0,-235.723	0/1:188:97,91:97:3476:91:3228:-234.149,0,-256.458	1/1:98:0,98:0:0:98:3468:-312.328,-29.5009,0	1/1:111:0,111:0:0:111:3967:-357.222,-33.4143,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:48:24,24:24:855:24:847:-62.0993,0,-62.8207	1/1:58:1,57:1:32:57:2032:-179.953,-14.2604,0	0/1:52:26,26:26:906:26:924:-67.8241,0,-66.1999	0/1:63:30,33:30:1057:33:1176:-87.1829,0,-76.4741	0/1:40:20,20:20:712:20:691:-50.4676,0,-52.3655	1/1:62:0,62:0:0:62:2193:-197.635,-18.6639,0	1/1:43:1,42:1:32:42:1476:-129.932,-9.74498,0	1/1:29:0,29:0:0:29:1012:-91.3899,-8.72987,0	0/1:168:78,90:78:2781:90:3211:-238.626,0,-199.957	1/1:108:0,108:0:0:108:3834:-345.258,-32.5112,0	1/1:159:0,159:0:0:159:5589:-503.138,-47.8638,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	1/1:70:0,70:0:0:70:2465:-222.104,-21.0721,0	1/1:133:0,132:0:0:132:4650:-418.303,-39.736,0	1/1:356:0,356:0:0:356:12630:-1136.45,-107.167,0	1/1:155:0,155:0:0:155:5503:-495.392,-46.6597,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:359:226,133:226:8058:133:4748:-319.407,0,-617.168	0/1:119:61,58:61:2179:58:2069:-150.656,0,-160.553	0/1:105:63,42:63:2253:42:1489:-102.694,0,-171.423	1/1:12:0,11:0:0:11:392:-34.7666,-3.31133,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:6,5:6:201:5:180:-13.2407,0,-15.1057	0/1:146:83,63:83:2943:63:2248:-158.633,0,-221.155	0/1:249:120,129:120:4292:129:4577:-337.135,0,-311.501	1/1:52:0,51:0:0:51:1815:-163.263,-15.3525,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:117:0,117:0:0:117:4155:-374.134,-35.2205,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:186:94,92:94:3354:92:3250:-236.731,0,-246.085	0/1:69:33,36:33:1175:36:1292:-95.8127,0,-85.2859	0/1:44:24,20:24:856:20:720:-51.8835,0,-64.1158	1/1:107:0,107:0:0:107:3823:-344.267,-32.2102,0	0/1:74:37,37:37:1319:37:1324:-97.1859,0,-96.6643	0/1:250:140,110:140:4994:110:3908:-276.656,0,-374.351	0/1:132:73,59:73:2615:59:2103:-149.803,0,-195.861	1/1:140:0,140:0:0:140:4954:-446.007,-42.1442,0	0/1:128:57,71:57:2036:71:2540:-190.319,0,-144.98	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:155:0,154:0:0:154:5493:-494.137,-46.3586,0	1/1:37:0,37:0:0:37:1308:-118.019,-11.1381,0	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/1:114:51,63:51:1821:63:2220:-165.745,0,-129.852	1/1:25:0,25:0:0:25:876:-79.1543,-7.52575,0	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:14:2,12:2:72:12:413:-33.2825,0,-2.6223	0/1:77:30,47:30:1080:47:1643:-124.973,0,-74.3339	1/1:92:0,92:0:0:92:3273:-294.791,-27.6948,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:175:0,175:0:0:175:6209:-558.908,-52.6803,0	0/1:190:94,96:94:3366:96:3410:-249.917,0,-245.959	0/1:54:19,35:19:684:35:1256:-97.0897,0,-45.6347	1/1:101:0,101:0:0:101:3585:-322.855,-30.404,0	0/1:197:106,91:106:3780:91:3230:-231.618,0,-281.095	0/1:151:110,41:110:3910:41:1464:-86.6005,0,-306.637	0/1:12:6,6:6:208:6:216:-16.1782,0,-15.4467	0/1:102:54,48:54:1931:48:1693:-121.949,0,-143.361	0/1:54:24,30:24:851:30:1041:-77.7422,0,-60.6538	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:118:0,118:0:0:118:4184:-376.742,-35.5215,0	0/1:52:18,34:18:640:34:1203:-92.9215,0,-42.2758	1/1:104:0,104:0:0:104:3712:-333.966,-31.3071,0	1/1:160:0,160:0:0:160:5703:-513.388,-48.1648,0	0/1:170:77,93:77:2756:93:3285:-244.694,0,-197.107	0/1:123:68,55:68:2432:55:1956:-139.286,0,-182.109	1/1:36:0,36:0:0:36:1277:-115.231,-10.8371,0	1/1:121:1,120:1:36:120:4255:-379.53,-32.8264,0	0/1:96:42,54:42:1504:54:1889:-141.385,0,-106.756	0/1:282:157,125:157:5599:125:4433:-314.251,0,-419.141	1/1:75:0,75:0:0:75:2683:-241.714,-22.5773,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:71:0,71:0:0:71:2504:-225.612,-21.3731,0	0/1:124:63,61:63:2198:61:2185:-159.588,0,-160.755	0/1:26:15,11:15:536:11:383:-26.9765,0,-40.748	0/1:74:38,36:38:1328:36:1283:-93.4964,0,-97.5407	1/1:52:0,52:0:0:52:1834:-165.339,-15.6536,0	0/1:28:17,11:17:612:11:392:-27.1912,0,-46.9846	0/1:73:30,43:30:1059:43:1535:-116.467,0,-73.6452	0/1:56:37,19:37:1303:19:672:-43.9492,0,-100.713	1/1:79:2,76:2:72:76:2698:-236.228,-17.0034,0	1/1:102:0,102:0:0:102:3652:-328.884,-30.7051,0
chr02	23797915	.	T	C	135797	PASS	AB=0.503433;ABP=3.51721;AC=140;AF=0.744681;AN=188;AO=6538;CIGAR=1X;DP=9000;DPB=9000;DPRA=0;EPP=14148;EPPR=5236.77;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9786;MQMR=59.9988;NS=94;NUMALT=1;ODDS=0.902184;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233238;QR=85747;RO=2458;RPL=6533;RPP=14156.7;RPPR=5236.77;RPR=5;RUN=1;SAF=1;SAP=14191.4;SAR=6537;SRF=0;SRP=5340.49;SRR=2458;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1707:-153.915,-14.4494,0	1/1:169:0,169:0:0:169:6044:-544.064,-50.8741,0	0/1:276:107,169:107:3781:169:6043:-460.888,0,-257.407	1/1:223:0,223:0:0:223:7956:-716.065,-67.1297,0	0/1:56:26,29:26:894:29:1040:-76.9979,0,-63.8533	0/1:35:17,18:17:577:18:644:-47.7545,0,-41.713	0/1:174:88,86:88:3113:86:3076:-224.689,0,-228.019	0/1:184:92,92:92:3222:92:3281:-240.118,0,-234.815	1/1:102:0,102:0:0:102:3644:-328.161,-30.7051,0	1/1:115:0,115:0:0:115:4057:-365.315,-34.6185,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:49:23,26:23:824:26:916:-68.0054,0,-59.7328	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:52:25,27:25:896:27:960:-71.048,0,-65.3068	0/1:63:30,33:30:1041:33:1184:-87.9034,0,-75.0325	0/1:37:18,19:18:636:19:667:-49.2165,0,-46.4299	1/1:61:0,61:0:0:61:2170:-195.565,-18.3628,0	1/1:44:0,44:0:0:44:1571:-141.681,-13.2453,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:162:71,91:71:2491:91:3248:-243.761,0,-175.673	1/1:114:0,114:0:0:114:4031:-362.98,-34.3174,0	1/1:157:0,157:0:0:157:5591:-503.043,-47.2617,0	1/1:62:0,62:0:0:62:2208:-198.985,-18.6639,0	1/1:70:0,70:0:0:70:2488:-224.173,-21.0721,0	1/1:135:0,135:0:0:135:4822:-434.134,-40.6391,0	1/1:369:0,369:0:0:369:13155:-1183.76,-111.08,0	1/1:160:0,160:0:0:160:5702:-513.295,-48.1648,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:346:212,134:212:7268:134:4775:-325.752,0,-550.03	0/1:119:58,61:58:2030:61:2184:-161.003,0,-147.147	0/1:105:61,44:61:2134:44:1569:-109.892,0,-160.717	1/1:11:0,11:0:0:11:384:-34.8947,-3.31133,0	1/1:20:0,20:0:0:20:705:-63.7728,-6.0206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,3:0:0:3:108:-9.71534,-0.90309,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:147:83,64:83:2907:64:2296:-162.65,0,-217.613	0/1:237:106,130:106:3625:130:4583:-341.393,0,-255.217	1/1:52:0,52:0:0:52:1860:-167.676,-15.6536,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:115:0,115:0:0:115:4128:-371.703,-34.6185,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:180:82,98:82:2783:98:3451:-256.618,0,-196.522	0/1:66:31,35:31:1073:35:1252:-93.1171,0,-77.0079	0/1:41:22,19:22:769:19:680:-49.1869,0,-57.1864	1/1:106:0,106:0:0:106:3773:-339.769,-31.9092,0	0/1:74:37,37:37:1305:37:1315:-96.3748,0,-95.4732	0/1:234:125,109:125:4341:109:3908:-281.472,0,-320.429	0/1:132:72,60:72:2535:60:2137:-152.86,0,-188.661	1/1:139:0,139:0:0:139:4971:-447.539,-41.8432,0	0/1:124:53,71:53:1892:71:2548:-192.243,0,-133.231	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:154:0,154:0:0:154:5524:-497.284,-46.3586,0	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	0/1:17:5,12:5:161:12:432:-34.1037,0,-9.68905	0/1:114:49,65:49:1672:65:2311:-173.933,0,-116.441	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:14:2,12:2:72:12:423:-34.1897,0,-2.6223	0/1:77:29,47:29:1024:47:1673:-127.617,0,-69.2347	1/1:91:0,91:0:0:91:3251:-292.811,-27.3937,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:182:0,182:0:0:182:6524:-587.242,-54.7875,0	0/1:184:89,95:89:3146:95:3408:-251.544,0,-227.975	0/1:56:20,36:20:712:36:1288:-99.3659,0,-47.549	1/1:101:0,101:0:0:101:3598:-324.025,-30.404,0	0/1:197:103,94:103:3539:94:3352:-242.595,0,-259.416	0/1:142:100,42:100:3411:42:1512:-93.6284,0,-264.46	0/1:12:6,6:6:204:6:216:-16.1782,0,-15.081	0/1:99:51,48:51:1801:48:1688:-122.401,0,-132.568	0/1:50:20,30:20:682:30:1068:-81.3806,0,-46.6432	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:119:0,119:0:0:119:4252:-382.86,-35.8226,0	0/1:49:15,34:15:521:34:1203:-93.8246,0,-32.4659	1/1:104:0,104:0:0:104:3682:-331.423,-31.3071,0	1/1:161:0,161:0:0:161:5776:-519.953,-48.4658,0	0/1:161:71,90:71:2460:90:3201:-239.846,0,-173.185	0/1:118:64,54:64:2265:54:1924:-137.912,0,-168.59	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:120:1,119:1:36:119:4257:-379.708,-32.5253,0	0/1:96:39,57:39:1366:57:2040:-154.973,0,-94.3355	0/1:275:152,123:152:5361:123:4394:-312.849,0,-399.839	1/1:78:0,78:0:0:78:2769:-249.451,-23.4803,0	1/1:37:0,37:0:0:37:1322:-119.282,-11.1381,0	1/1:70:0,70:0:0:70:2500:-225.253,-21.0721,0	0/1:125:61,64:61:2134:64:2291:-168.822,0,-154.697	0/1:26:15,11:15:528:11:396:-28.156,0,-40.0246	0/1:72:36,36:36:1276:36:1292:-94.9096,0,-93.4689	1/1:51:0,51:0:0:51:1823:-164.35,-15.3525,0	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/1:68:27,41:27:951:41:1468:-111.946,0,-65.4343	0/1:55:37,18:37:1316:18:627:-40.1977,0,-102.185	1/1:79:1,78:1:36:78:2765:-245.493,-20.1831,0	1/1:101:0,101:0:0:101:3612:-325.286,-30.404,0
chr02	23881747	.	ATTTTTTATTGTC	ATTTTTTATTGAC,ATTTTTTTATTGAC	163882	PASS	AB=0.492729,0.494398;ABP=4.93641,4.15375;AC=139,49;AF=0.739362,0.260638;AN=188;AO=5631,2088;CIGAR=11M1X1M,1M1I10M1X1M;DP=7817;DPB=7978.62;DPRA=9.32855,1.33765;EPP=12230.6,4528.36;EPPR=18.2106;GTI=1;LEN=1,14;MEANALT=2.44086,3.01923;MQM=59.9521,55.0053;MQMR=60;NS=94;NUMALT=2;ODDS=2.09136;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=201076,73432;QR=217;RO=7;RPL=0,1;RPP=12230.6,4528.36;RPPR=18.2106;RPR=5631,2087;RUN=1,1;SAF=0,0;SAP=12230.6,4537.04;SAR=5631,2088;SRF=0;SRP=18.2106;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11,0:0:0:11,0:388,0:-35.2574,-3.31133,0,-35.2574,-3.31133,-35.2574	1/1:179:0,177,0:0:0:177,0:6351,0:-571.318,-53.2823,0,-571.318,-53.2823,-571.318	1/2:86:0,51,35:0:0:51,35:1828,1229:-249.108,-100.014,-84.661,-149.448,0,-138.911	1/1:200:0,198,0:0:0:198,0:7077,0:-636.644,-59.6039,0,-636.644,-59.6039,-636.644	1/2:60:0,26,32:0:0:26,32:926,1140:-168.312,-92.8358,-85.0091,-75.5038,0,-65.8709	1/2:42:0,18,24:0:0:18,24:644,860:-122.815,-70.3001,-64.8816,-52.8721,0,-45.6473	1/2:101:0,49,52:0:0:49,52:1752,1840:-293.002,-150.146,-135.396,-143.212,0,-127.558	1/2:154:0,87,65:0:0:87,65:3105,2282:-438.195,-185.11,-158.921,-253.137,0,-233.57	1/1:98:0,96,0:0:0:96,0:3456,0:-310.889,-28.8989,0,-310.889,-28.8989,-310.889	1/1:102:0,102,0:0:0:102,0:3643,0:-328.075,-30.7051,0,-328.075,-30.7051,-328.075	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7787,-9.0309,0,-96.7787,-9.0309,-96.7787	1/2:40:0,18,22:0:0:18,22:648,772:-115.895,-63.0169,-57.5984,-53.2333,0,-46.6107	1/1:37:1,36,0:1:35:36,0:1273,0:-111.372,-7.63948,0,-111.673,-10.8371,-114.521	1/2:49:0,33,16:0:0:33,16:1163,559:-140.455,-45.7628,-35.8288,-95.0421,0,-90.2257	1/2:33:0,18,15:0:0:18,15:638,532:-95.6482,-43.6744,-38.2559,-52.3281,0,-47.8127	1/2:36:0,16,20:0:0:16,20:568,696:-103.151,-56.8674,-52.0509,-46.6354,0,-40.6148	1/1:43:0,43,0:0:0:43,0:1519,0:-136.999,-12.9443,0,-136.999,-12.9443,-136.999	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/1:36:0,36,0:0:0:36,0:1276,0:-115.142,-10.8371,0,-115.142,-10.8371,-115.142	1/2:207:0,115,91:0:0:115,91:4115,3232:-598.341,-262.803,-228.184,-335.644,0,-308.25	1/1:110:0,110,0:0:0:110,0:3923,0:-353.247,-33.1133,0,-353.247,-33.1133,-353.247	1/1:118:0,116,0:0:0:116,0:4156,0:-373.897,-34.9195,0,-373.897,-34.9195,-373.897	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:65:1,64,0:1:30:64,0:2283,0:-202.728,-16.5674,0,-203.029,-19.2659,-205.427	1/1:65:0,64,0:0:0:64,0:2289,0:-205.982,-19.2659,0,-205.982,-19.2659,-205.982	1/1:278:1,275,2:1:32:275,2:9821,57:-880.658,-80.1932,0,-876.434,-78.2807,-878.41	1/1:213:0,206,0:0:0:206,0:7342,0:-660.517,-62.0122,0,-660.517,-62.0122,-660.517	1/1:24:0,23,0:0:0:23,0:824,0:-74.1236,-6.92369,0,-74.1236,-6.92369,-74.1236	1/2:226:0,106,116:0:0:106,116:3768,4090:-639.787,-332.731,-300.822,-307.059,0,-272.14	1/2:140:0,70,69:0:0:70,69:2491,2408:-398.369,-195.351,-174.279,-203.011,0,-182.24	1/2:124:0,64,59:0:0:64,59:2282,2050:-352.378,-166.354,-147.088,-186.064,0,-168.303	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:10:0,9,0:0:0:9,0:320,0:-28.783,-2.70927,0,-28.783,-2.70927,-28.783	1/2:2:0,1,1:0:0:1,1:36,36:-6.22607,-3.2882,-2.98717,-3.29724,0,-2.99621	1/2:125:0,67,54:0:0:67,54:2404,1918:-352.332,-156.277,-136.108,-196.071,0,-179.815	1/2:217:0,94,122:0:0:94,122:3318,4286:-618.451,-348.262,-319.966,-270.181,0,-233.455	1/1:35:0,35,0:0:0:35,0:1252,0:-112.985,-10.5361,0,-112.985,-10.5361,-112.985	2/2:9:0,0,9:0:0:0,9:0,309:-28.1136,-28.1136,-28.1136,-2.70927,-2.70927,0	1/1:132:0,132,0:0:0:132,0:4742,0:-426.923,-39.736,0,-426.923,-39.736,-426.923	1/1:28:0,28,0:0:0:28,0:996,0:-89.9549,-8.42884,0,-89.9549,-8.42884,-89.9549	1/2:106:0,58,47:0:0:58,47:2077,1664:-304.775,-135.39,-117.931,-169.381,0,-155.232	1/2:35:1,17,17:1:36:17,17:612,599:-95.3336,-45.6943,-43.5147,-46.9987,0,-44.8186	1/2:37:0,21,16:0:0:21,16:752,555:-106.754,-45.4209,-39.0993,-61.6846,0,-56.8681	1/1:74:0,72,0:0:0:72,0:2562,0:-230.494,-21.6742,0,-230.494,-21.6742,-230.494	1/2:138:0,75,62:0:0:75,62:2677,2142:-391.377,-173.131,-150.553,-218.237,0,-199.573	1/2:155:0,83,68:0:0:83,68:2976,2394:-437.553,-194.819,-169.833,-242.795,0,-222.325	1/2:76:0,37,38:0:0:37,38:1312,1334:-215.478,-108.586,-97.4475,-107.029,0,-95.5902	1/1:161:0,160,0:0:0:160,0:5736,0:-515.996,-48.1648,0,-515.996,-48.1648,-515.996	1/2:77:0,35,42:0:0:35,42:1239,1480:-221.757,-120.833,-110.297,-101.278,0,-88.6343	1/2:13:0,10,3:0:0:10,3:356,108:-38.1795,-9.16729,-6.15699,-29.3709,0,-28.4679	1/1:100:0,98,0:0:0:98,0:3511,0:-315.893,-29.5009,0,-315.893,-29.5009,-315.893	1/1:89:0,89,0:0:0:89,0:3188,0:-287.137,-26.7917,0,-287.137,-26.7917,-287.137	1/2:45:0,10,34:0:0:10,34:356,1216:-127.585,-98.5731,-95.5628,-29.0089,0,-18.7739	1/2:154:0,69,81:0:0:69,81:2477,2866:-435.216,-233.17,-212.399,-202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chr02	23893585	.	TCG	GCG,GCA	120826	PASS	AB=0.38676,0.610706;ABP=354.645,339.084;AC=139,49;AF=0.739362,0.260638;AN=188;AO=3747,1938;CIGAR=1X2M,1X1M1X;DP=5703;DPB=5703;DPRA=15.3199,1.27791;EPP=8035.62,4185.31;EPPR=5.18177;GTI=6;LEN=1,3;MEANALT=1.70968,2.13725;MQM=59.9202,59.3731;MQMR=60;NS=94;NUMALT=2;ODDS=0.298672;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=133882,68168;QR=36;RO=1;RPL=12,3;RPP=8035.62,4185.31;RPPR=5.18177;RPR=3735,1935;RUN=1,1;SAF=3747,1938;SAP=8139.52,4211.32;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,14,0:0:0:14,0:500,0:-44.9765,-4.21442,0,-44.9765,-4.21442,-44.9765	1/1:85:0,85,0:0:0:85,0:3033,0:-273.199,-25.5876,0,-273.199,-25.5876,-273.199	1/2:133:0,42,91:0:0:42,91:1504,3199:-383.176,-260.525,-247.882,-123.007,0,-95.613	1/1:127:0,127,0:0:0:127,0:4521,0:-407.056,-38.2308,0,-407.056,-38.2308,-407.056	1/2:18:0,2,16:0:0:2,16:72,562:-51.8822,-46.0064,-45.4043,-6.23466,0,-1.41818	1/2:18:0,10,8:0:0:10,8:360,284:-52.8343,-23.4571,-20.4468,-29.734,0,-27.3258	1/2:43:0,16,27:0:0:16,27:568,944:-123.421,-77.1387,-72.3222,-46.6354,0,-38.5076	1/2:69:0,22,46:0:0:22,46:788,1617:-195.869,-131.602,-124.98,-64.2624,0,-50.415	1/1:59:0,59,0:0:0:59,0:2112,0:-190.321,-17.7608,0,-190.321,-17.7608,-190.321	1/1:51:0,50,0:0:0:50,0:1791,0:-161.106,-15.0515,0,-161.106,-15.0515,-161.106	1/1:57:0,57,0:0:0:57,0:2052,0:-184.945,-17.1587,0,-184.945,-17.1587,-184.945	1/2:68:0,31,37:0:0:31,37:1116,1308:-197.92,-106.857,-97.5253,-91.4198,0,-80.2817	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/2:78:0,35,43:0:0:35,43:1256,1520:-226.471,-124.018,-113.482,-102.809,0,-89.8649	1/2:44:0,14,30:0:0:14,30:504,1045:-126.442,-85.3146,-81.1002,-41.4837,0,-32.4528	1/2:64:0,25,39:0:0:25,39:900,1376:-185.79,-112.352,-104.826,-73.7953,0,-62.0551	1/1:29:0,29,0:0:0:29,0:1025,0:-92.5607,-8.72987,0,-92.5607,-8.72987,-92.5607	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/1:28:0,28,0:0:0:28,0:995,0:-89.864,-8.42884,0,-89.864,-8.42884,-89.864	1/2:61:0,24,37:0:0:24,37:864,1282:-175.042,-104.538,-97.3137,-70.8578,0,-59.7197	1/1:99:0,99,0:0:0:99,0:3543,0:-319.078,-29.802,0,-319.078,-29.802,-319.078	1/1:31:0,31,0:0:0:31,0:1097,0:-99.0365,-9.33193,0,-99.0365,-9.33193,-99.0365	1/1:37:0,37,0:0:0:37,0:1313,0:-118.469,-11.1381,0,-118.469,-11.1381,-118.469	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/1:31:0,31,0:0:0:31,0:1112,0:-100.39,-9.33193,0,-100.39,-9.33193,-100.39	1/1:157:0,154,3:0:0:154,3:5479,108:-492.877,-46.3586,0,-484.065,-37.1865,-483.162	1/1:165:0,164,0:0:0:164,0:5868,0:-527.867,-49.3689,0,-527.867,-49.3689,-527.867	1/1:13:0,13,0:0:0:13,0:460,0:-41.7354,-3.91339,0,-41.7354,-3.91339,-41.7354	1/2:122:0,63,58:0:0:63,58:2257,2009:-347.29,-163.216,-144.251,-184.067,0,-166.607	1/2:177:0,68,109:0:0:68,109:2436,3828:-510.468,-311.848,-291.378,-198.976,0,-166.164	1/2:31:0,15,16:0:0:15,16:536,541:-87.9008,-44.1893,-39.6739,-44.0594,0,-39.2429	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:11:0,11,0:0:0:11,0:381,0:-34.6206,-3.31133,0,-34.6206,-3.31133,-34.6206	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:10:0,8,2:0:0:8,2:288,72:-29.734,-6.23466,-3.82642,-23.8592,0,-23.2571	1/2:118:0,44,73:0:0:44,73:1584,2600:-341.029,-211.781,-198.536,-129.246,0,-107.271	1/2:105:0,23,82:0:0:23,82:828,2889:-303.057,-235.523,-228.6,-67.892,0,-43.2075	1/1:35:0,34,1:0:0:34,1:1211,27:-109.023,-10.235,0,-106.897,-7.83627,-106.596	2/2:4:0,0,4:0:0:0,4:0,135:-12.4825,-12.4825,-12.4825,-1.20412,-1.20412,0	1/1:66:0,66,0:0:0:66,0:2335,0:-210.406,-19.868,0,-210.406,-19.868,-210.406	1/1:35:0,35,0:0:0:35,0:1220,0:-110.087,-10.5361,0,-110.087,-10.5361,-110.087	1/2:48:0,21,27:0:0:21,27:756,934:-137.935,-76.2428,-69.9212,-62.0456,0,-53.9178	1/2:58:0,36,22:0:0:36,22:1288,773:-168.294,-63.2608,-52.4238,-105.387,0,-98.7638	1/2:33:0,11,22:0:0:11,22:396,785:-96.6644,-64.3518,-61.0404,-32.6714,0,-26.0488	1/1:46:0,45,0:0:0:45,0:1574,0:-141.575,-13.5464,0,-141.575,-13.5464,-141.575	1/2:58:0,10,48:0:0:10,48:360,1693:-167.565,-138.189,-135.179,-29.734,0,-15.2846	1/2:125:0,40,84:0:0:40,84:1421,2965:-356.707,-240.917,-228.876,-115.785,0,-90.498	1/2:95:0,36,59:0:0:36,59:1296,2067:-274.254,-168.503,-157.666,-106.107,0,-88.3461	1/1:74:0,74,0:0:0:74,0:2640,0:-237.846,-22.2762,0,-237.846,-22.2762,-237.846	1/2:27:0,16,11:0:0:16,11:572,364:-76.4223,-29.7669,-24.9505,-46.9969,0,-43.6856	1/2:10:0,6,4:0:0:6,4:216,144:-29.734,-12.1095,-10.3033,-17.9843,0,-16.7802	1/1:83:0,81,0:0:0:81,0:2908,0:-261.595,-24.3834,0,-261.595,-24.3834,-261.595	1/1:34:1,33,0:1:36:33,0:1184,0:-103.27,-6.63675,0,-103.571,-9.93399,-106.509	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:101:0,43,57:0:0:43,57:1540,2006:-288.857,-163.264,-150.32,-125.589,0,-108.43	1/1:25:0,25,0:0:0:25,0:888,0:-80.048,-7.52575,0,-80.048,-7.52575,-80.048	1/2:6:0,2,4:0:0:2,4:72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chr02	23896594	.	T	A	41883.7	PASS	AB=0.521088;ABP=20.0453;AC=49;AF=0.260638;AN=188;AO=2306;CIGAR=1X;DP=8493;DPB=8493;DPRA=1.02841;EPP=4478.16;EPPR=12336.5;GTI=1;LEN=1;MEANALT=1.01852;MQM=59.99;MQMR=59.9948;NS=94;NUMALT=1;ODDS=0.222641;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82521;QR=221091;RO=6185;RPL=63;RPP=4478.16;RPPR=12336.5;RPR=2243;RUN=1;SAF=2306;SAP=5010.43;SAR=0;SRF=6185;SRP=13433.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:63:33,30:33:1184:30:1076:-78.188,0,-87.9034	0/0:227:227,0:227:8128:0:0:0,-68.3338,-731.536	0/1:96:45,51:45:1620:51:1796:-133.02,0,-117.191	0/1:23:10,13:10:356:13:464:-35.1738,0,-25.4576	0/1:91:39,52:39:1400:52:1864:-140.646,0,-98.9055	0/1:148:54,94:54:1931:94:3368:-258.783,0,-129.513	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/0:76:76,0:76:2710:0:0:0,-22.8783,-244.143	0/1:90:48,42:48:1720:42:1512:-109.282,0,-127.993	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:95:50,45:50:1764:45:1612:-116.754,0,-130.443	0/1:61:30,31:30:1076:31:1099:-80.8558,0,-78.79	0/1:53:34,19:34:1216:19:668:-44.4888,0,-93.792	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:30:30,0:30:1071:0:0:0,-9.0309,-96.7016	0/1:186:95,90:95:3377:90:3228:-234.691,0,-248.095	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.541	0/0:115:115,0:115:4105:0:0:0,-34.6184,-369.634	0/0:111:111,0:111:3971:0:0:0,-33.4143,-357.567	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:339:339,0:339:12128:0:0:0,-102.049,-1091.37	0/0:171:171,0:171:6093:0:0:0,-51.4761,-548.473	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:294:122,172:122:4349:172:6176:-467.432,0,-303.082	0/1:121:57,64:57:2035:64:2280:-169.036,0,-146.997	0/1:116:58,58:58:2072:58:2084:-152.911,0,-151.818	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:258:142,116:142:5022:116:4172:-297.995,0,-374.464	0/1:139:67,72:67:2404:72:2576:-190.246,0,-174.773	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:156:156,0:156:5561:0:0:0,-46.9607,-500.615	0/0:41:41,0:41:1467:0:0:0,-12.3422,-132.325	0/1:118:54,64:54:1931:64:2283:-170.209,0,-138.544	0/1:110:47,63:47:1671:63:2264:-170.909,0,-117.563	0/1:66:34,32:34:1207:32:1148:-83.7619,0,-89.0673	0/0:71:70,1:70:2495:1:36:0,-17.7749,-221.204	0/1:137:71,66:71:2539:66:2372:-172.497,0,-187.519	0/1:174:72,102:72:2571:102:3656:-276.864,0,-179.26	0/1:86:48,38:48:1720:38:1368:-97.5322,0,-129.197	0/0:77:76,1:76:2709:1:32:0,-19.98,-240.853	0/1:133:60,73:60:2151:73:2620:-196.01,0,-153.82	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:105:50,55:50:1787:55:1957:-144.796,0,-129.504	0/0:76:75,1:75:2688:1:36:0,-19.28,-238.566	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/1:24:14,10:14:500:10:356:-25.1565,0,-38.1115	0/1:77:27,50:27:964:50:1781:-137.392,0,-63.8975	0/0:103:103,0:103:3672:0:0:0,-31.0061,-330.682	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:284:284,0:284:10165:0:0:0,-85.4925,-914.778	0/1:130:67,63:67:2391:63:2256:-164.169,0,-176.313	0/1:49:24,25:24:852:25:892:-65.8492,0,-62.2499	0/0:101:101,0:101:3610:0:0:0,-30.404,-325.105	0/1:131:66,65:66:2351:65:2336:-171.064,0,-172.414	0/1:25:3,22:3:108:22:780:-62.9973,0,-2.54942	0/1:28:11,17:11:388:17:612:-46.9846,0,-26.8285	0/1:57:34,23:34:1211:23:801:-55.248,0,-92.1368	0/1:92:55,37:55:1972:37:1312:-90.6848,0,-150.06	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:87:86,1:86:3075:1:36:0,-22.5913,-273.38	0/1:38:19,19:19:684:19:680:-50.09,0,-50.4512	0/0:153:153,0:153:5484:0:0:0,-46.0576,-493.677	0/0:199:198,0:198:7108:0:0:0,-59.6039,-639.416	0/1:78:34,44:34:1208:44:1572:-118.291,0,-85.5457	0/1:113:51,62:51:1832:62:2224:-166.408,0,-131.144	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:136:134,2:134:4796:2:72:0,-34.1034,-424.96	0/1:88:52,36:52:1851:36:1288:-89.7329,0,-140.379	0/1:202:89,113:89:3200:113:4048:-303.699,0,-227.414	0/0:115:115,0:115:4136:0:0:0,-34.6184,-372.422	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:93:93,0:93:3335:0:0:0,-27.9958,-300.366	0/1:174:89,85:89:3191:85:3047:-222.079,0,-235.033	0/1:35:17,18:17:608:18:638:-47.2124,0,-44.516	0/1:86:52,34:52:1859:34:1213:-83.5867,0,-141.7	0/0:79:78,1:78:2765:1:36:0,-20.1831,-245.493	0/1:45:14,31:14:495:31:1094:-85.2219,0,-31.3367	0/1:76:38,38:38:1349:38:1368:-100.543,0,-98.83	0/1:75:22,53:22:788:53:1904:-149.06,0,-48.6675	0/0:82:82,0:82:2919:0:0:0,-24.6845,-262.945	0/0:115:115,0:115:4095:0:0:0,-34.6184,-368.734
chr02	23931576	.	C	A	165400	PASS	AB=0.541309;ABP=80.6915;AC=135;AF=0.733696;AN=184;AO=7838;CIGAR=1X;DP=10251;DPB=10251;DPRA=28.1511;EPP=16944.9;EPPR=5212.41;GTI=3;LEN=1;MEANALT=1.02198;MQM=59.9895;MQMR=59.9988;NS=92;NUMALT=1;ODDS=0.510287;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=280005;QR=86024;RO=2411;RPL=9;RPP=16944.9;RPPR=5212.41;RPR=7829;RUN=1;SAF=7838;SAP=17023;SAR=0;SRF=2411;SRP=5238.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54:0:0:54:1928:-173.796,-16.2556,0	1/1:129:0,129:0:0:129:4608:-414.885,-38.8329,0	0/1:88:44,44:44:1572:44:1555:-113.75,0,-115.281	1/1:213:0,213:0:0:213:7577:-681.974,-64.1194,0	0/1:115:45,70:45:1603:70:2504:-190.994,0,-109.941	0/1:104:46,58:46:1652:58:2084:-156.523,0,-117.661	0/1:117:42,75:42:1508:75:2681:-206.313,0,-100.794	0/1:139:69,70:69:2476:70:2483:-181.879,0,-181.25	1/1:94:1,93:1:36:93:3344:-297.522,-24.6985,0	1/1:129:0,129:0:0:129:4611:-415.155,-38.8329,0	1/1:43:0,42:0:0:42:1488:-133.855,-12.6433,0	0/1:82:36,46:36:1288:46:1652:-124.284,0,-91.5382	1/1:71:0,71:0:0:71:2527:-227.681,-21.3731,0	0/1:77:40,37:40:1436:37:1320:-95.9226,0,-106.358	0/1:56:27,29:27:968:29:1044:-77.4171,0,-70.5797	0/1:58:23,35:23:811:35:1256:-95.8855,0,-55.8502	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	0/1:242:120,122:120:4278:122:4336:-317.565,0,-312.349	1/1:126:0,126:0:0:126:4502:-405.349,-37.9298,0	1/1:155:0,155:0:0:155:5560:-500.514,-46.6597,0	1/1:143:0,143:0:0:143:5126:-461.482,-43.0473,0	1/1:130:0,130:0:0:130:4625:-416.415,-39.1339,0	1/1:101:0,101:0:0:101:3604:-324.567,-30.404,0	1/1:413:1,412:1:32:412:14710:-1320.44,-121.126,0	1/1:215:1,214:1:36:214:7577:-678.374,-61.1232,0	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	0/1:261:131,130:131:4696:130:4664:-341.352,0,-344.231	0/1:217:100,117:100:3564:117:4166:-309.797,0,-255.646	0/1:182:75,107:75:2680:107:3840:-291.008,0,-186.658	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:233:97,136:97:3476:136:4853:-366.784,0,-242.911	0/1:289:125,164:125:4470:164:5878:-442.132,0,-315.471	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:167:0,167:0:0:167:5948:-535.43,-50.272,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:232:80,152:80:2855:152:5421:-418.181,0,-187.349	0/1:79:41,38:41:1455:38:1368:-99.6395,0,-107.464	0/1:68:40,28:40:1436:28:999:-69.6979,0,-109.068	1/1:143:0,143:0:0:143:5075:-456.894,-43.0473,0	0/1:124:60,64:60:2139:64:2288:-168.854,0,-155.45	0/1:172:74,98:74:2636:98:3490:-262.532,0,-185.711	0/1:130:55,75:55:1959:75:2688:-203.031,0,-137.451	1/1:177:0,177:0:0:177:6352:-571.769,-53.2823,0	0/1:147:70,77:70:2508:77:2737:-202.321,0,-181.721	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:125:0,125:0:0:125:4434:-399.23,-37.6288,0	1/1:62:0,62:0:0:62:2205:-198.714,-18.6639,0	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:87:44,43:44:1584:43:1544:-113.063,0,-116.662	1/1:85:0,84:0:0:84:3012:-271.089,-25.2865,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:30:10,20:10:360:20:716:-55.7368,0,-23.7134	0/1:59:33,26:33:1171:26:932:-66.4381,0,-87.9359	1/1:89:0,89:0:0:89:3185:-286.874,-26.7917,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:338:0,338:0:0:338:12108:-1089.57,-101.748,0	0/1:128:59,69:59:2107:69:2462:-183.303,0,-151.367	0/1:52:17,35:17:604:35:1256:-97.6917,0,-39.037	1/1:113:0,113:0:0:113:4043:-364.057,-34.0164,0	0/1:234:114,120:114:4009:120:4280:-314.938,0,-290.561	0/1:62:38,24:38:1346:24:864:-59.4187,0,-102.775	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	0/1:57:24,33:24:843:33:1180:-89.3493,0,-59.0293	0/1:58:29,29:29:1040:29:1044:-76.8151,0,-76.4546	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:125:0,125:0:0:125:4445:-400.222,-37.6288,0	0/1:84:41,43:41:1472:43:1548:-114.327,0,-107.49	1/1:130:0,130:0:0:130:4653:-418.93,-39.1339,0	1/1:254:0,254:0:0:254:9081:-817.267,-76.4616,0	0/1:168:78,90:78:2776:90:3211:-238.639,0,-199.509	0/1:140:60,80:60:2135:80:2872:-216.572,0,-150.273	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:140:0,140:0:0:140:5013:-451.315,-42.1442,0	0/1:106:45,61:45:1595:61:2177:-164.285,0,-111.93	0/1:238:93,145:93:3323:145:5173:-394.065,0,-227.643	1/1:103:0,103:0:0:103:3685:-331.851,-31.0061,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:96:0,96:0:0:96:3456:-311.251,-28.8989,0	0/1:178:83,95:83:2976:95:3394:-252.092,0,-214.489	0/1:36:19,17:19:675:17:608:-44.2149,0,-50.2399	0/1:85:43,42:43:1536:42:1504:-110.067,0,-112.945	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:27:18,9:18:627:9:320:-21.0145,0,-48.6266	0/1:76:42,34:42:1499:34:1220:-87.2285,0,-112.326	0/1:80:53,27:53:1884:27:968:-63.355,0,-145.756	1/1:235:0,235:0:0:235:8346:-751.147,-70.7421,0	1/1:95:0,95:0:0:95:3377:-304.146,-28.5979,0
chr02	23931609	.	T	C	36039	PASS	AB=0.45276;ABP=102.717;AC=49;AF=0.266304;AN=184;AO=2341;CIGAR=1X;DP=10149;DPB=10149;DPRA=1.15085;EPP=5069.07;EPPR=16899.3;GTI=4;LEN=1;MEANALT=1.03704;MQM=59.9991;MQMR=59.9946;NS=92;NUMALT=1;ODDS=0.859269;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81487;QR=277663;RO=7805;RPL=2339;RPP=5069.07;RPPR=16890.6;RPR=2;RUN=1;SAF=2341;SAP=5086.43;SAR=0;SRF=7804;SRP=16942.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/0:132:132,0:132:4657:0:0:0,-39.736,-419.295	0/1:88:44,44:44:1544:44:1534:-111.859,0,-112.758	0/0:211:210,1:210:7486:1:36:0,-59.9191,-670.188	0/1:114:68,46:68:2440:46:1633:-112.939,0,-185.538	0/1:102:56,46:56:2008:46:1593:-112.95,0,-150.288	0/1:113:72,41:72:2556:41:1455:-97.2288,0,-196.275	0/1:138:72,66:72:2530:66:2339:-169.228,0,-186.404	0/0:95:94,1:94:3330:1:36:0,-24.9996,-296.262	0/0:130:130,0:130:4624:0:0:0,-39.1339,-416.324	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:82:47,35:47:1650:35:1197:-83.3427,0,-124.102	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:78:38,40:38:1335:40:1375:-100.563,0,-96.9688	0/1:56:29,27:29:1024:27:900:-64.4453,0,-75.6149	0/1:58:35,23:35:1256:23:816:-56.302,0,-95.8855	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:74:74,0:74:2600:0:0:0,-22.2762,-234.249	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:237:121,116:121:4321:116:4052:-293.523,0,-317.721	0/0:129:129,0:129:4586:0:0:0,-38.8329,-412.904	0/0:156:155,1:155:5501:1:36:0,-43.3624,-491.611	0/0:143:143,0:143:5100:0:0:0,-43.0473,-459.143	0/0:129:129,0:129:4592:0:0:0,-38.8329,-413.445	0/0:99:99,0:99:3508:0:0:0,-29.802,-315.931	0/0:408:405,3:405:14409:3:86:0,-114.795,-1288.54	0/0:220:219,1:219:7747:1:36:0,-62.6283,-693.669	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/1:258:130,128:130:4660:128:4449:-322.919,0,-341.895	0/1:214:115,99:115:4075:99:3458:-247.013,0,-302.517	0/1:177:103,74:103:3675:74:2607:-181.595,0,-277.671	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/1:7:5,2:5:172:2:72:-4.72951,0,-13.7108	0/1:231:137,94:137:4847:94:3258:-223.905,0,-366.849	0/1:282:165,117:165:5877:117:4139:-287.805,0,-444.151	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/0:171:170,0:170:6042:0:0:0,-51.1751,-543.525	0/0:32:32,0:32:1132:0:0:0,-9.63296,-102.189	0/1:224:149,75:149:5313:75:2583:-165.283,0,-410.874	0/1:80:40,40:40:1386:40:1363:-98.8814,0,-100.95	0/1:69:29,40:29:1031:40:1345:-100.57,0,-72.3316	0/0:139:139,0:139:4933:0:0:0,-41.8432,-444.121	0/1:120:61,59:61:2173:59:2047:-148.374,0,-159.711	0/1:166:96,70:96:3413:70:2447:-170.514,0,-257.413	0/1:127:75,52:75:2662:52:1807:-124.675,0,-201.595	0/0:181:181,0:181:6459:0:0:0,-54.4864,-581.395	0/1:150:79,71:79:2804:71:2477:-178.028,0,-207.444	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/0:60:59,1:59:2090:1:36:0,-14.4635,-184.771	0/1:15:7,8:7:252:8:279:-20.9321,0,-18.5135	0/1:85:41,44:41:1464:44:1544:-113.661,0,-106.469	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.512	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:30:20,10:20:720:10:360:-23.7134,0,-56.0979	0/1:56:25,31:25:896:31:1103:-82.7221,0,-64.1027	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/0:334:334,0:334:11917:0:0:0,-100.544,-1072.39	0/1:123:67,56:67:2386:56:1977:-141.176,0,-177.97	0/1:52:36,16:36:1296:16:568:-35.7983,0,-101.29	0/0:110:110,0:110:3894:0:0:0,-33.1133,-350.654	0/1:225:117,108:117:4196:108:3759:-270.777,0,-310.089	0/1:58:24,34:24:864:34:1154:-86.6963,0,-60.6228	0/1:15:6,9:6:212:9:305:-23.2618,0,-14.9093	0/1:55:32,23:32:1135:23:787:-54.5858,0,-85.9014	0/1:56:28,28:28:989:28:975:-71.2039,0,-72.4643	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:124:124,0:124:4424:0:0:0,-37.3277,-398.331	0/1:84:44,40:44:1572:40:1385:-99.6556,0,-116.485	0/0:128:128,0:128:4547:0:0:0,-38.5318,-409.397	0/0:253:253,0:253:9045:0:0:0,-76.1606,-814.024	0/1:165:89,76:89:3173:76:2653:-189.348,0,-236.123	0/1:137:76,61:76:2724:61:2081:-146.312,0,-204.162	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/0:143:143,0:143:5096:0:0:0,-43.0473,-458.781	0/1:105:63,42:63:2218:42:1469:-100.894,0,-168.273	0/1:232:145,86:145:5122:86:2980:-198.591,0,-391.286	0/0:103:103,0:103:3675:0:0:0,-31.0061,-330.948	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:94:94,0:94:3340:0:0:0,-28.2968,-300.817	0/1:176:93,82:93:3283:82:2877:-206.216,0,-242.739	0/1:35:17,18:17:608:18:617:-45.3139,0,-44.516	0/1:82:42,40:42:1496:40:1372:-99.0865,0,-110.25	0/0:72:72,0:72:2564:0:0:0,-21.6742,-231.011	0/1:24:8,16:8:284:16:564:-43.8656,0,-18.6786	0/1:76:34,42:34:1204:42:1476:-110.253,0,-85.7876	0/1:79:27,52:27:954:52:1778:-136.517,0,-62.3926	0/0:230:230,0:230:8170:0:0:0,-69.2369,-735.319	0/0:95:95,0:95:3358:0:0:0,-28.5978,-302.439
chr02	23931671	.	TCC	ACT,ACC	221496	PASS	AB=0.526926,0.468244;ABP=29.0874,39.2814;AC=141,47;AF=0.75,0.25;AN=188;AO=6210,1948;CIGAR=1X1M1X,1X2M;DP=8195;DPB=8195;DPRA=0,1.14037;EPP=3.09982,3.01476;EPPR=3.0103;GTI=1;LEN=3,1;MEANALT=1.93617,2.32727;MQM=59.8998,59.962;MQMR=60;NS=94;NUMALT=2;ODDS=0.331421;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=218940,69373;QR=62;RO=2;RPL=3113,973;RPP=3.09982,3.01476;RPPR=3.0103;RPR=3097,975;RUN=1,1;SAF=0,0;SAP=13487.9,4233.04;SAR=6210,1948;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:91:0,91,0:0:0:91,0:3152,0:-283.903,-27.3937,0,-283.903,-27.3937,-283.903	1/1:45:0,45,0:0:0:45,0:1599,0:-144.199,-13.5464,0,-144.199,-13.5464,-144.199	1/2:111:0,63,47:0:0:63,47:2181,1672:-313.496,-136.259,-117.294,-177.228,0,-163.08	1/1:195:0,193,0:0:0:193,0:6823,0:-613.789,-58.0988,0,-613.789,-58.0988,-613.789	1/2:50:0,33,17:0:0:33,17:1165,596:-143.425,-48.5776,-38.6436,-95.1974,0,-90.0799	1/2:52:0,21,31:0:0:21,31:742,1101:-150.494,-90.0664,-83.7448,-60.782,0,-51.45	1/2:90:0,61,29:0:0:61,29:2147,1040:-259.96,-85.1845,-66.8217,-175.132,0,-166.402	1/2:120:0,72,46:0:0:72,46:2520,1628:-337.623,-132.601,-110.926,-205.015,0,-191.167	1/1:184:0,184,0:0:0:184,0:6445,0:-580.144,-55.3895,0,-580.144,-55.3895,-580.144	1/1:67:0,66,0:0:0:66,0:2329,0:-209.509,-19.868,0,-209.509,-19.868,-209.509	1/1:48:0,48,0:0:0:48,0:1673,0:-150.842,-14.4494,0,-150.842,-14.4494,-150.842	1/2:103:0,54,48:0:0:54,48:1865,1700:-290.154,-138.633,-122.377,-151.669,0,-137.219	1/1:103:0,102,0:0:0:102,0:3618,0:-325.465,-30.7051,0,-325.465,-30.7051,-325.465	1/2:73:0,49,24:0:0:49,24:1729,864:-211.643,-70.8578,-56.1074,-141.143,0,-133.918	1/2:72:0,41,31:0:0:41,31:1458,1116:-210.235,-91.4198,-79.0775,-119.173,0,-109.841	1/2:63:1,23,39:1:34:23,39:806,1385:-175.391,-110.109,-105.943,-62.8373,0,-53.8547	1/1:25:0,25,0:0:0:25,0:896,0:-80.9606,-7.52575,0,-80.9606,-7.52575,-80.9606	1/1:34:0,34,0:0:0:34,0:1207,0:-108.927,-10.235,0,-108.927,-10.235,-108.927	1/1:44:0,44,0:0:0:44,0:1561,0:-140.781,-13.2453,0,-140.781,-13.2453,-140.781	1/2:149:0,71,76:0:0:71,76:2517,2712:-426.182,-221.13,-199.757,-205.091,0,-182.213	1/1:159:0,158,1:0:0:158,1:5523,36:-496.814,-47.5627,0,-493.877,-44.2655,-493.576	1/1:124:0,123,1:0:0:123,1:4337,36:-390.148,-37.0267,0,-387.211,-33.7294,-386.91	1/1:183:0,182,1:0:0:182,1:6422,36:-576.527,-54.7875,0,-573.59,-51.4902,-573.289	1/1:41:0,39,2:0:0:39,2:1350,72:-121.432,-11.7402,0,-115.556,-5.50551,-114.954	1/1:96:0,96,0:0:0:96,0:3397,0:-305.945,-28.8989,0,-305.945,-28.8989,-305.945	1/1:227:0,225,0:0:0:225,0:7908,0:-711.395,-67.7318,0,-711.395,-67.7318,-711.395	1/1:237:0,236,0:0:0:236,0:8321,0:-748.459,-71.0431,0,-748.459,-71.0431,-748.459	1/1:30:0,30,0:0:0:30,0:1070,0:-96.6118,-9.0309,0,-96.6118,-9.0309,-96.6118	1/2:291:0,142,149:0:0:142,149:5026,5340:-845.218,-435.879,-393.133,-409.695,0,-364.842	1/2:119:0,61,57:0:0:61,57:2173,2011:-341.009,-163.889,-145.526,-177.261,0,-160.102	1/2:108:0,54,53:0:0:54,53:1914,1873:-308.54,-152.613,-136.358,-156.07,0,-140.115	1/1:3:0,3,0:0:0:3,0:106,0:-9.8891,-0.90309,0,-9.8891,-0.90309,-9.8891	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:11:0,1,10:0:0:1,10:36,360:-32.6714,-29.734,-29.433,-3.29724,0,-0.286945	1/2:218:0,103,113:0:0:103,113:3615,4052:-624.656,-330.548,-299.542,-294.159,0,-260.143	1/2:107:0,57,50:0:0:57,50:2023,1792:-311.339,-146.511,-129.352,-165.184,0,-150.133	1/1:64:0,63,0:0:0:63,0:2230,0:-200.604,-18.9649,0,-200.604,-18.9649,-200.604	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:106:0,106,0:0:0:106,0:3731,0:-335.992,-31.9092,0,-335.992,-31.9092,-335.992	1/1:32:0,31,1:0:0:31,1:1092,36:-98.2266,-9.33193,0,-95.2889,-6.03469,-94.9879	1/2:130:0,65,64:0:0:65,64:2282,2275:-371.161,-185.445,-165.878,-185.767,0,-166.501	1/2:62:0,35,27:0:0:35,27:1204,953:-175.729,-77.9555,-67.4195,-98.1222,0,-89.9944	1/2:60:0,33,26:0:0:33,26:1153,932:-169.926,-76.1373,-66.2033,-93.9064,0,-86.0796	1/1:144:0,143,0:0:0:143,0:5032,0:-452.752,-43.0473,0,-452.752,-43.0473,-452.752	1/2:90:0,48,42:0:0:48,42:1677,1504:-259.421,-123.011,-108.562,-136.764,0,-124.121	1/2:148:0,92,55:0:0:92,55:3264,1940:-423.77,-158.105,-130.41,-265.805,0,-249.249	1/2:94:0,50,44:0:0:50,44:1765,1566:-271.712,-127.986,-112.935,-144.08,0,-130.835	1/1:52:0,52,0:0:0:52,0:1851,0:-166.865,-15.6536,0,-166.865,-15.6536,-166.865	1/2:82:1,33,48:1:28:33,48:1159,1697:-230.095,-136.066,-128.349,-92.1831,0,-79.9503	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/1:73:0,73,0:0:0:73,0:2600,0:-234.24,-21.9752,0,-234.24,-21.9752,-234.24	1/1:67:0,67,0:0:0:67,0:2354,0:-212.118,-20.169,0,-212.118,-20.169,-212.118	1/2:10:0,6,4:0:0:6,4:214,140:-29.1895,-11.7405,-9.93428,-17.8016,0,-16.5975	1/2:151:0,84,67:0:0:84,67:2962,2369:-434.474,-193.299,-168.012,-241.528,0,-221.359	1/1:72:0,70,1:0:0:70,1:2442,36:-219.673,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chr02	23931676	.	C	A	32568.5	PASS	AB=0.47661;ABP=22.4121;AC=47;AF=0.25;AN=188;AO=1952;CIGAR=1X;DP=8022;DPB=8022;DPRA=1.13629;EPP=4155.31;EPPR=12958.8;GTI=1;LEN=1;MEANALT=1.09615;MQM=59.9447;MQMR=59.9223;NS=94;NUMALT=1;ODDS=1.03927;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69637;QR=216704;RO=6062;RPL=1942;RPP=4155.31;RPPR=12958.8;RPR=10;RUN=1;SAF=0;SAP=4241.72;SAR=1952;SRF=0;SRP=13166.5;SRR=6062;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:88:88,0:88:3121:0:0:0,-26.4906,-281.117	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:108:62,46:62:2212:46:1634:-114.836,0,-166.834	0/0:191:191,0:191:6790:0:0:0,-57.4967,-611.175	0/1:49:32,17:32:1148:17:604:-39.4467,0,-88.7495	0/1:49:19,30:19:680:30:1080:-82.7628,0,-46.7787	0/1:90:59,31:59:2105:31:1108:-72.9383,0,-162.625	0/1:115:69,46:69:2464:46:1627:-112.098,0,-187.396	0/0:179:179,0:179:6382:0:0:0,-53.8844,-574.461	0/0:67:66,0:66:2353:0:0:0,-19.868,-211.746	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:101:52,49:52:1864:49:1752:-127.56,0,-137.635	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.239	0/1:71:47,24:47:1692:24:860:-56.3487,0,-131.194	0/1:71:41,30:41:1451:30:1053:-73.7054,0,-109.512	0/1:65:23,42:23:828:42:1495:-115.277,0,-55.2772	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.22	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:151:70,81:70:2520:81:2870:-213.08,0,-181.596	0/0:151:151,0:151:5387:0:0:0,-45.4555,-484.928	0/0:120:119,1:119:4261:1:36:0,-32.5253,-380.068	0/0:178:178,0:178:6362:0:0:0,-53.5833,-571.479	0/0:41:39,2:39:1392:2:72:0,-5.50551,-118.74	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:221:220,1:220:7845:1:36:0,-62.9294,-702.478	0/0:231:231,0:231:8276:0:0:0,-69.5379,-744.717	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/1:292:138,154:138:4956:154:5492:-406.506,0,-358.286	0/1:118:59,59:59:2116:59:2089:-152.757,0,-155.187	0/1:107:53,54:53:1900:54:1908:-139.685,0,-139.068	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2163	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:1,10:1:36:10:351:-28.6153,0,-0.286945	0/1:212:100,111:100:3600:111:3984:-294.989,0,-259.954	0/1:104:56,48:56:2016:48:1724:-124.138,0,-150.406	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.646	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.901	0/1:126:63,62:63:2260:62:2199:-160.244,0,-165.724	0/1:65:34,30:34:1220:30:1072:-77.1668,0,-90.4811	0/1:61:34,27:34:1216:27:968:-69.0745,0,-91.3837	0/0:133:133,0:133:4740:0:0:0,-40.037,-426.75	0/1:90:50,40:50:1781:40:1397:-98.9321,0,-133.478	0/1:146:90,56:90:3198:56:1993:-135.692,0,-243.72	0/1:94:49,45:49:1752:45:1616:-117.433,0,-129.667	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.153	0/1:78:30,48:30:1067:48:1716:-131.245,0,-72.8609	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.843	0/0:66:66,0:66:2333:0:0:0,-19.868,-210.228	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/1:145:82,63:82:2940:63:2260:-160.013,0,-221.185	0/0:70:69,1:69:2426:1:36:0,-17.4738,-214.996	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:86:49,37:49:1764:37:1315:-92.7624,0,-133.155	0/0:119:119,0:119:4225:0:0:0,-35.8226,-380.418	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:154:153,1:153:5445:1:36:0,-42.7603,-486.093	0/1:97:45,52:45:1600:52:1859:-138.389,0,-115.09	0/1:34:19,15:19:680:15:529:-37.7056,0,-51.2941	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/1:132:74,58:74:2648:58:2076:-147.374,0,-198.826	0/1:133:63,69:63:2264:69:2466:-182.173,0,-164.025	0/1:27:13,14:13:464:14:504:-37.5703,0,-33.9697	0/1:36:27,9:27:949:9:324:-18.6688,0,-74.8857	0/1:54:29,25:29:1044:25:900:-65.0654,0,-78.0192	0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3318	0/0:125:125,0:125:4466:0:0:0,-37.6287,-402.099	0/1:55:25,30:25:896:30:1052:-78.4311,0,-64.4037	0/0:193:193,0:193:6896:0:0:0,-58.0988,-620.705	0/0:142:141,0:141:5060:0:0:0,-42.4452,-455.184	0/1:134:87,47:87:3105:47:1677:-110.877,0,-239.321	0/1:70:32,38:32:1136:38:1360:-101.628,0,-81.4768	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.616	0/1:77:42,35:42:1508:35:1252:-89.8058,0,-112.834	0/1:157:84,72:84:3020:72:2584:-185.567,0,-224.788	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.164	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.283	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/1:140:71,69:71:2544:69:2470:-180.41,0,-187.047	0/1:18:11,7:11:388:7:252:-17.6104,0,-29.8388	0/1:77:42,35:42:1508:35:1260:-90.5262,0,-112.832	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.87	0/1:32:20,12:20:716:12:425:-28.9537,0,-55.1301	0/1:109:43,66:43:1533:66:2364:-180.204,0,-105.379	0/1:71:26,45:26:936:45:1612:-123.997,0,-63.1863	0/0:128:127,0:127:4560:0:0:0,-38.2308,-410.192	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.807
chr02	23931683	.	G	C	128140	PASS	AB=0.520282;ABP=17.7201;AC=141;AF=0.75;AN=188;AO=6111;CIGAR=1X;DP=8095;DPB=8095;DPRA=0;EPP=13272.9;EPPR=4263.51;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9057;MQMR=59.9616;NS=94;NUMALT=1;ODDS=1.25666;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218197;QR=70514;RO=1978;RPL=6111;RPP=13272.9;RPPR=4263.51;RPR=0;RUN=1;SAF=0;SAP=13272.9;SAR=6111;SRF=0;SRP=4298.18;SRR=1978;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:86:0,85:0:0:85:3017:-271.401,-25.5876,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:110:47,63:47:1667:63:2244:-169.111,0,-117.203	1/1:194:0,194:0:0:194:6894:-620.528,-58.3998,0	0/1:48:16,32:16:572:32:1139:-88.3236,0,-37.364	0/1:51:31,20:31:1112:20:720:-49.7762,0,-85.0388	0/1:90:31,59:31:1104:59:2124:-164.336,0,-72.5779	0/1:118:45,73:45:1603:73:2616:-200.158,0,-109.038	1/1:181:0,181:0:0:181:6430:-578.787,-54.4864,0	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	1/1:46:0,46:0:0:46:1634:-147.343,-13.8474,0	0/1:97:48,49:48:1724:49:1760:-129.484,0,-126.245	1/1:98:0,98:0:0:98:3496:-314.849,-29.5009,0	0/1:73:25,48:25:896:48:1715:-132.66,0,-58.9852	0/1:71:31,40:31:1108:40:1425:-107.172,0,-78.6579	0/1:64:42,22:42:1508:22:792:-52.3398,0,-116.749	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:33:0,33:0:0:33:1184:-106.86,-9.93399,0	1/1:43:0,43:0:0:43:1539:-138.803,-12.9443,0	0/1:151:80,69:80:2835:69:2461:-176.53,0,-210.177	1/1:158:0,158:0:0:158:5633:-507.06,-47.5627,0	1/1:119:1,118:1:36:118:4209:-375.392,-32.2243,0	1/1:182:1,181:1:36:181:6478:-578.316,-51.1892,0	1/1:41:2,39:2:68:39:1384:-118.397,-5.88452,0	1/1:94:0,94:0:0:94:3365:-303.064,-28.2968,0	1/1:222:0,222:0:0:222:7887:-709.852,-66.8287,0	1/1:232:0,232:0:0:232:8290:-745.977,-69.839,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:291:152,138:152:5417:138:4903:-353.706,0,-400.003	0/1:121:60,61:60:2096:61:2192:-161.121,0,-152.483	0/1:110:56,54:56:1992:54:1924:-140.323,0,-145.921	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/1:217:114,103:114:4088:103:3704:-267.257,0,-302.782	0/1:106:50,56:50:1792:56:2004:-148.724,0,-129.653	1/1:63:0,63:0:0:63:2248:-202.584,-18.9649,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:104:0,102:0:0:102:3660:-329.243,-30.7051,0	1/1:32:0,32:0:0:32:1128:-101.826,-9.63296,0	0/1:129:64,65:64:2276:65:2317:-169.947,0,-166.27	0/1:63:31,32:31:1107:32:1141:-84.0333,0,-80.9753	0/1:62:28,34:28:999:34:1216:-91.0827,0,-71.5606	1/1:140:0,140:0:0:140:4969:-447.328,-42.1442,0	0/1:88:39,49:39:1392:49:1764:-132.553,0,-99.0884	0/1:147:56,91:56:1987:91:3241:-247.469,0,-134.852	0/1:95:45,50:45:1608:50:1792:-132.965,0,-116.412	1/1:50:0,50:0:0:50:1788:-161.194,-15.0515,0	0/1:82:49,33:49:1756:33:1169:-80.8308,0,-133.64	0/1:6:1,5:1:36:5:165:-13.3674,0,-1.79209	1/1:73:0,73:0:0:73:2624:-236.399,-21.9752,0	1/1:64:0,64:0:0:64:2284:-205.82,-19.2659,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:145:64,81:64:2260:81:2881:-215.877,0,-160.012	1/1:72:1,71:1:36:71:2540:-225.253,-18.0759,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:84:36,48:36:1273:48:1724:-130.159,0,-89.5844	1/1:116:0,116:0:0:116:4153:-373.943,-34.9195,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:151:1,150:1:36:150:5341:-476.733,-41.8573,0	0/1:99:53,46:53:1896:46:1633:-117.455,0,-141.116	0/1:34:15,19:15:536:19:676:-50.933,0,-38.3398	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:133:59,74:59:2107:74:2641:-197.894,0,-149.861	0/1:135:70,65:70:2504:65:2298:-166.439,0,-184.887	0/1:27:14,13:14:491:13:464:-33.9697,0,-36.3933	0/1:36:9,27:9:324:27:945:-74.5252,0,-18.6688	0/1:56:28,28:28:1008:28:1008:-74.1787,0,-74.1787	1/1:17:0,17:0:0:17:602:-54.5042,-5.11751,0	1/1:124:0,124:0:0:124:4435:-399.31,-37.3277,0	0/1:57:31,26:31:1101:26:928:-66.6795,0,-82.2397	1/1:200:0,200:0:0:200:7111:-640.05,-60.206,0	1/1:146:0,146:0:0:146:5210:-469.038,-43.9504,0	0/1:133:47,86:47:1683:86:3064:-235.933,0,-111.719	0/1:70:39,31:39:1384:31:1112:-79.3192,0,-103.787	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:65:0,65:0:0:65:2324:-209.418,-19.567,0	0/1:75:33,42:33:1165:42:1512:-113.796,0,-82.5778	0/1:161:76,85:76:2715:85:3030:-224.462,0,-196.127	1/1:96:0,96:0:0:96:3443:-309.952,-28.8989,0	1/1:75:0,75:0:0:75:2696:-242.853,-22.5773,0	1/1:59:0,59:0:0:59:2116:-190.707,-17.7608,0	0/1:140:71,69:71:2536:69:2473:-180.674,0,-186.347	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/1:78:35,43:35:1245:43:1539:-115.322,0,-88.8724	1/1:84:0,84:0:0:84:3024:-272.389,-25.2865,0	0/1:31:11,20:11:396:20:709:-54.8024,0,-26.6508	0/1:114:70,44:70:2499:44:1569:-107.177,0,-190.84	0/1:72:45,27:45:1612:27:968:-65.7632,0,-123.696	1/1:130:0,130:0:0:130:4654:-419.009,-39.1339,0	1/1:120:0,120:0:0:120:4312:-388.166,-36.1236,0
chr02	23944551	.	C	G	13756.5	PASS	AB=0.400554;ABP=158.058;AC=51;AF=0.271277;AN=188;AO=874;CIGAR=1X;DP=3960;DPB=3960;DPRA=0.894338;EPP=1900.88;EPPR=6691.15;GTI=6;LEN=1;MEANALT=1.04;MQM=59.9954;MQMR=59.9857;NS=94;NUMALT=1;ODDS=0.574194;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31019;QR=108059;RO=3080;RPL=874;RPP=1900.88;RPPR=6691.15;RPR=0;RUN=1;SAF=874;SAP=1900.88;SAR=0;SRF=3080;SRP=6691.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:61:43,18:43:1502:18:635:-39.1141,0,-117.109	0/0:88:88,0:88:3120:0:0:0,-26.4906,-281.026	0/1:18:8,10:8:284:10:351:-26.5081,0,-20.4848	0/1:37:17,20:17:608:20:703:-52.4554,0,-43.9137	0/1:43:20,23:20:716:23:824:-61.539,0,-51.8234	0/1:53:26,27:26:932:27:968:-71.4828,0,-68.2443	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/0:60:60,0:60:2116:0:0:0,-18.0618,-190.707	0/0:34:34,0:34:1182:0:0:0,-10.235,-106.683	0/1:39:28,11:28:964:11:384:-23.1545,0,-75.328	0/0:63:63,0:63:2165:0:0:0,-18.9649,-195.112	0/1:24:17,7:17:591:7:248:-15.4395,0,-46.2905	0/1:54:36,18:36:1258:18:639:-41.5826,0,-97.2514	0/1:28:24,4:24:841:4:140:-4.51574,0,-67.5775	0/0:21:21,0:21:706:0:0:0,-6.32163,-63.8509	0/0:37:36,1:36:1269:1:36:0,-7.53983,-110.912	0/0:20:20,0:20:688:0:0:0,-6.0206,-62.2375	0/1:44:30,14:30:1059:14:504:-32.4528,0,-82.3751	0/0:56:56,0:56:1924:0:0:0,-16.8577,-173.43	0/0:28:28,0:28:981:0:0:0,-8.42884,-88.6008	0/0:38:38,0:38:1332:0:0:0,-11.4391,-120.177	0/0:27:27,0:27:944:0:0:0,-8.12781,-85.2713	0/0:24:23,0:23:819:0:0:0,-6.92369,-73.6719	0/0:95:95,0:95:3381:0:0:0,-28.5978,-304.505	0/0:91:91,0:91:3204:0:0:0,-27.3937,-288.582	0/0:14:14,0:14:467:0:0:0,-4.21442,-42.3469	0/1:67:41,26:41:1451:26:913:-62.315,0,-110.716	0/1:52:30,22:30:1015:22:779:-54.7785,0,-75.997	0/1:32:16,16:16:546:16:576:-42.542,0,-39.8288	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:266:0:0:0,-2.40824,-24.2636	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:77:3,74:3:108:74:2622:-226.152,-13.1041,0	0/1:86:70,16:70:2473:16:572:-25.9248,0,-196.932	0/1:26:16,10:16:567:10:360:-24.9175,0,-43.5339	0/0:36:36,0:36:1256:0:0:0,-10.8371,-113.339	0/1:28:5,23:5:180:23:820:-65.6937,0,-8.12322	0/0:44:44,0:44:1553:0:0:0,-13.2453,-140.06	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:56:38,18:38:1347:18:635:-40.6193,0,-104.672	0/1:20:12,8:12:419:8:288:-20.2468,0,-32.0221	0/1:34:21,13:21:695:13:459:-31.4091,0,-52.624	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.889	0/1:36:15,21:15:521:21:756:-57.5301,0,-36.3792	0/1:42:32,10:32:1117:10:351:-19.2834,0,-88.1921	0/1:26:13,13:13:459:13:453:-33.2728,0,-33.8173	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/1:31:25,6:25:883:6:207:-9.63496,0,-70.4555	1/1:77:1,76:1:36:76:2709:-240.454,-19.581,0	0/0:35:35,0:35:1224:0:0:0,-10.536,-110.461	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/1:42:5,37:5:180:37:1319:-106.368,0,-3.9088	0/1:60:42,18:42:1492:18:636:-39.5062,0,-116.513	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:36:9,27:9:324:27:964:-76.2397,0,-18.6688	0/1:9:3,6:3:99:6:216:-17.0812,0,-6.52731	0/1:14:5,9:5:176:9:324:-25.2914,0,-11.9706	0/0:64:64,0:64:2271:0:0:0,-19.2659,-204.652	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:129:129,0:129:4555:0:0:0,-38.8329,-410.117	0/1:17:13,4:13:455:4:144:-8.19611,0,-36.1644	0/1:21:17,4:17:612:4:135:-6.16088,0,-49.0918	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/1:36:21,15:21:747:15:531:-37.2848,0,-56.7172	0/1:63:37,26:37:1261:26:915:-63.7007,0,-94.8197	0/1:11:4,7:4:140:7:237:-18.3477,0,-9.63325	0/1:7:3,4:3:93:4:144:-11.2064,0,-6.56952	0/1:21:16,5:16:555:5:180:-10.2304,0,-43.9544	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:51:49,0:49:1742:0:0:0,-14.7505,-156.703	0/1:60:39,21:39:1387:21:748:-49.5811,0,-107.066	0/0:84:84,0:84:2905:0:0:0,-25.2865,-261.637	0/0:116:115,0:115:4032:0:0:0,-34.6184,-362.707	0/1:22:18,4:18:611:4:144:-6.69096,0,-48.6838	0/1:65:56,8:56:1975:8:275:-5.45954,0,-158.396	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:58:27,31:27:922:31:1103:-82.1201,0,-65.8271	0/1:72:34,38:34:1198:38:1356:-100.666,0,-86.4498	0/0:42:42,0:42:1450:0:0:0,-12.6433,-130.788	0/0:62:62,0:62:2147:0:0:0,-18.6639,-193.496	0/0:38:38,0:38:1298:0:0:0,-11.4391,-117.094	0/1:50:43,7:43:1512:7:252:-7.97746,0,-121.319	0/1:18:11,7:11:384:7:252:-17.6104,0,-29.4761	0/1:53:30,23:30:1051:23:828:-58.8895,0,-78.945	0/0:52:52,0:52:1821:0:0:0,-15.6536,-164.169	0/1:28:13,15:13:449:15:536:-40.146,0,-32.3086	0/1:64:31,32:31:1074:32:1101:-80.0697,0,-77.6422	0/1:37:17,20:17:578:20:711:-53.1775,0,-41.1993	0/0:101:101,0:101:3591:0:0:0,-30.404,-323.396	0/0:78:78,0:78:2703:0:0:0,-23.4803,-243.511
chr02	24020291	.	GAGC	GAGA,AAGA	108202	PASS	AB=0.558408,0.438616;ABP=82.66,90.984;AC=135,47;AF=0.741758,0.258242;AN=182;AO=3927,1180;CIGAR=3M1X,1X2M1X;DP=5119;DPB=5119.25;DPRA=0,1.06809;EPP=8530.38,2565.35;EPPR=0;GTI=1;LEN=1,4;MEANALT=1.65934,2.16667;MQM=54.372,43.3644;MQMR=0;NS=91;NUMALT=2;ODDS=1.3666;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=140735,41714;QR=0;RO=0;RPL=3927,1180;RPP=8530.38,2565.35;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8530.38,2565.35;SAR=3927,1180;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,24,0:0:0:24,0:860,0:-77.1637,-7.22472,0,-77.1637,-7.22472,-77.1637	1/1:49:0,49,0:0:0:49,0:1752,0:-156.274,-14.7505,0,-156.274,-14.7505,-156.274	1/2:54:0,46,8:0:0:46,8:1652,286:-157.219,-22.8585,-9.01112,-134.708,0,-132.3	1/1:67:0,67,0:0:0:67,0:2400,0:-215.394,-20.169,0,-215.394,-20.169,-215.394	1/2:18:0,6,12:0:0:6,12:212,419:-50.8564,-33.6135,-31.8073,-17.5919,0,-13.9795	1/2:22:0,9,13:0:0:9,13:324,457:-62.2067,-36.2677,-33.5585,-26.2872,0,-22.3738	1/2:59:0,28,31:0:0:28,31:1008,1096:-168.84,-86.8218,-78.3929,-82.3693,0,-73.0374	1/2:66:0,40,26:0:0:40,26:1432,929:-189.827,-73.4471,-61.4059,-116.73,0,-108.903	1/1:68:0,68,0:0:0:68,0:2444,0:-219.362,-20.47,0,-219.362,-20.47,-219.362	1/1:72:0,72,0:0:0:72,0:2580,0:-232.115,-21.6742,0,-232.115,-21.6742,-232.115	1/1:44:0,44,0:0:0:44,0:1580,0:-142.385,-13.2453,0,-142.385,-13.2453,-142.385	1/2:68:0,38,29:0:0:38,29:1368,1018:-189.403,-78.2934,-66.8543,-111.171,0,-102.441	1/1:44:0,44,0:0:0:44,0:1580,0:-142.14,-13.2453,0,-142.14,-13.2453,-142.14	1/2:64:0,29,35:0:0:29,35:1040,1246:-184.302,-99.6043,-90.8744,-85.0513,0,-74.5152	1/2:55:0,29,26:0:0:29,26:1044,925:-159.248,-74.1354,-65.4055,-85.4666,0,-77.6398	1/2:50:0,25,24:0:0:25,24:900,852:-140.588,-67.2647,-59.739,-73.318,0,-66.0933	1/1:29:0,29,0:0:0:29,0:1040,0:-93.4362,-8.72987,0,-93.4362,-8.72987,-93.4362	1/1:34:0,34,0:0:0:34,0:1224,0:-110.002,-10.235,0,-110.002,-10.235,-110.002	1/1:10:0,10,0:0:0:10,0:356,0:-31.8173,-3.0103,0,-31.8173,-3.0103,-31.8173	1/2:65:0,41,24:0:0:41,24:1476,864:-188.796,-69.2452,-56.903,-119.905,0,-112.68	1/1:96:0,95,1:0:0:95,1:3416,36:-305.675,-28.5979,0,-302.807,-25.3779,-302.506	1/1:69:0,69,0:0:0:69,0:2480,0:-223.274,-20.7711,0,-223.274,-20.7711,-223.274	1/2:67:0,43,24:0:0:43,24:1529,836:-191.002,-66.4956,-53.5513,-124.851,0,-117.627	1/1:57:0,57,0:0:0:57,0:2033,0:-182.605,-17.1587,0,-182.605,-17.1587,-182.605	1/1:64:0,64,0:0:0:64,0:2300,0:-206.655,-19.2659,0,-206.655,-19.2659,-206.655	1/1:145:0,145,0:0:0:145,0:5176,0:-465.625,-43.6494,0,-465.625,-43.6494,-465.625	1/1:131:0,131,0:0:0:131,0:4687,0:-420.644,-39.4349,0,-420.644,-39.4349,-420.644	1/1:21:0,21,0:0:0:21,0:752,0:-67.9085,-6.32163,0,-67.9085,-6.32163,-67.9085	1/2:103:0,59,44:0:0:59,44:2112,1576:-298.216,-126.341,-108.58,-172.229,0,-158.984	1/2:95:0,62,33:0:0:62,33:2224,1173:-273.525,-92.9623,-74.2984,-180.912,0,-170.978	1/2:46:0,36,10:0:0:36,10:1296,348:-133.794,-28.2333,-17.3962,-105.908,0,-102.898	.:.:.:.:.:.:.:.	1/1:5:0,5,0:0:0:5,0:180,0:-16.5286,-1.50515,0,-16.5286,-1.50515,-16.5286	1/1:1:0,1,0:0:0:1,0:36,0:-3.58923,-0.30103,0,-3.58923,-0.30103,-3.58923	1/1:5:0,5,0:0:0:5,0:180,0:-16.5105,-1.50515,0,-16.5105,-1.50515,-16.5105	1/2:6:0,2,4:0:0:2,4:72,143:-17.4651,-11.6023,-11.0003,-6.21747,0,-5.01335	1/2:175:0,104,70:0:0:104,70:3718,2496:-503.667,-200.857,-169.55,-302.806,0,-281.734	1/2:79:0,41,38:0:0:41,38:1476,1326:-225.264,-105.286,-92.9433,-120.327,0,-108.888	1/1:57:0,57,0:0:0:57,0:2040,0:-183.043,-17.1587,0,-183.043,-17.1587,-183.043	.:.:.:.:.:.:.:.	1/1:42:0,42,0:0:0:42,0:1504,0:-135.346,-12.6433,0,-135.346,-12.6433,-135.346	1/1:15:0,15,0:0:0:15,0:540,0:-48.8493,-4.51545,0,-48.8493,-4.51545,-48.8493	1/2:107:0,63,44:0:0:63,44:2256,1551:-306.898,-123.264,-104.299,-183.984,0,-170.738	1/2:35:0,16,19:0:0:16,19:572,684:-101.8,-55.3149,-50.4984,-46.8405,0,-41.121	1/2:25:0,17,8:0:0:17,8:608,280:-72.2282,-22.6803,-17.5628,-49.896,0,-47.4877	1/1:83:0,82,0:0:0:82,0:2936,0:-263.935,-24.6845,0,-263.935,-24.6845,-263.935	1/2:59:0,34,25:0:0:34,25:1220,876:-166.225,-67.1553,-56.9202,-99.4113,0,-91.8856	1/2:86:0,53,33:0:0:53,33:1900,1169:-247.61,-94.1354,-78.1808,-153.826,0,-143.892	1/2:56:0,33,22:0:0:33,22:1180,788:-159.35,-63.3095,-53.3755,-96.0374,0,-89.4148	1/1:68:0,68,0:0:0:68,0:2426,0:-218.23,-20.47,0,-218.23,-20.47,-218.23	1/2:84:0,43,41:0:0:43,41:1536,1470:-243.494,-118.423,-105.478,-125.427,0,-113.085	.:.:.:.:.:.:.:.	1/1:68:0,68,0:0:0:68,0:2440,0:-218.748,-20.47,0,-218.748,-20.47,-218.748	1/1:35:0,34,0:0:0:34,0:1220,0:-109.66,-10.235,0,-109.66,-10.235,-109.66	1/2:7:0,2,4:0:0:2,4:68,137:-16.2615,-10.7677,-10.1657,-5.48669,0,-4.28257	1/2:57:0,42,15:0:0:42,15:1512,532:-165.239,-42.1983,-29.5551,-123.389,0,-118.873	1/1:17:0,17,0:0:0:17,0:603,0:-54.534,-5.11751,0,-54.534,-5.11751,-54.534	1/2:5:0,1,4:0:0:1,4:36,144:-14.5814,-11.6423,-11.3413,-3.29624,0,-2.09212	1/2:11:0,6,5:0:0:6,5:216,180:-32.5215,-14.9022,-13.096,-17.9773,0,-16.4722	1/2:46:0,30,16:0:0:30,16:1076,566:-131.344,-43.7369,-34.706,-87.9499,0,-83.1334	1/1:82:0,82,0:0:0:82,0:2952,0:-265.527,-24.6845,0,-265.527,-24.6845,-265.527	1/1:1:0,1,0:0:0:1,0:36,0:-3.59568,-0.30103,0,-3.59568,-0.30103,-3.59568	1/1:120:0,120,0:0:0:120,0:4304,0:-387.195,-36.1236,0,-387.195,-36.1236,-387.195	1/2:102:0,62,39:0:0:62,39:2197,1360:-287.253,-108.523,-89.8596,-178.721,0,-166.981	1/2:44:0,19,25:0:0:19,25:684,874:-123.768,-68.0466,-62.327,-56.0703,0,-48.5445	1/1:24:0,24,0:0:0:24,0:864,0:-77.9399,-7.22472,0,-77.9399,-7.22472,-77.9399	1/2:91:0,38,53:0:0:38,53:1368,1871:-260.788,-149.335,-137.896,-111.807,0,-95.8527	1/2:79:0,28,51:0:0:28,51:1008,1792:-225.907,-144.099,-135.67,-82.1622,0,-66.8097	1/2:16:0,6,10:0:0:6,10:216,358:-45.7722,-28.169,-26.3628,-17.9563,0,-14.946	1/2:33:0,21,12:0:0:21,12:752,425:-94.0796,-33.0994,-26.7778,-61.324,0,-57.7117	1/2:43:0,22,21:0:0:22,21:788,748:-124.196,-59.9483,-53.3256,-64.6012,0,-58.2796	1/1:13:0,13,0:0:0:13,0:468,0:-42.4281,-3.91339,0,-42.4281,-3.91339,-42.4281	1/1:51:0,51,0:0:0:51,0:1813,0:-162.707,-15.3525,0,-162.707,-15.3525,-162.707	1/2:67:0,45,22:0:0:45,22:1612,755:-190.537,-59.7267,-46.1804,-131.151,0,-124.529	1/1:100:0,100,0:0:0:100,0:3584,0:-322.073,-30.103,0,-322.073,-30.103,-322.073	1/1:87:0,87,0:0:0:87,0:3128,0:-280.952,-26.1896,0,-280.952,-26.1896,-280.952	1/2:34:0,14,20:0:0:14,20:496,707:-95.4197,-55.3745,-51.16,-40.3915,0,-34.3709	1/2:64:0,46,18:0:0:46,18:1645,639:-184.371,-50.6396,-36.7922,-134.079,0,-128.661	1/1:10:0,10,0:0:0:10,0:360,0:-32.6564,-3.0103,0,-32.6564,-3.0103,-32.6564	1/1:58:0,58,0:0:0:58,0:2080,0:-186.853,-17.4597,0,-186.853,-17.4597,-186.853	1/2:34:0,23,11:0:0:23,11:828,379:-97.4791,-30.1519,-23.2283,-67.6696,0,-64.3583	1/2:108:0,52,56:0:0:52,56:1864,1986:-310.475,-158.73,-143.076,-152.098,0,-135.241	1/1:87:0,87,0:0:0:87,0:3104,0:-279.134,-26.1896,0,-279.134,-26.1896,-279.134	1/1:61:0,61,0:0:0:61,0:2173,0:-195.611,-18.3628,0,-195.611,-18.3628,-195.611	1/1:48:0,48,0:0:0:48,0:1724,0:-155.251,-14.4494,0,-155.251,-14.4494,-155.251	1/2:103:0,53,48:0:0:53,48:1904,1650:-286.344,-131.761,-115.806,-154.576,0,-140.126	1/2:19:0,11,8:0:0:11,8:396,288:-54.2963,-23.0008,-19.6895,-31.6441,0,-29.2359	1/2:50:0,26,24:0:0:26,24:936,849:-143.082,-66.9114,-59.0846,-76.5201,0,-69.2954	1/1:45:0,45,0:0:0:45,0:1615,0:-144.9,-13.5464,0,-144.9,-13.5464,-144.9	1/2:26:0,9,17:0:0:9,17:320,598:-73.9543,-47.9115,-45.2022,-26.394,0,-21.2765	1/2:57:0,28,29:0:0:28,29:1004,1036:-164.019,-82.3763,-73.9474,-81.9954,0,-73.2655	1/2:48:0,20,28:0:0:20,28:712,996:-137.532,-79.5424,-73.5218,-58.3419,0,-49.9131	1/1:149:0,149,0:0:0:149,0:5352,0:-480.79,-44.8535,0,-480.79,-44.8535,-480.79	1/1:74:0,73,0:0:0:73,0:2620,0:-235.341,-21.9752,0,-235.341,-21.9752,-235.341
chr02	24021178	.	A	G	89811.3	PASS	AB=0.487541;ABP=7.50123;AC=132;AF=0.717391;AN=184;AO=3539;CIGAR=1X;DP=5320;DPB=5320;DPRA=58.4505;EPP=612.918;EPPR=526.684;GTI=3;LEN=1;MEANALT=1.02198;MQM=59.9924;MQMR=59.9966;NS=92;NUMALT=1;ODDS=0.381205;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125093;QR=63405;RO=1779;RPL=3539;RPP=7687.85;RPPR=3866.06;RPR=0;RUN=1;SAF=2268;SAP=612.918;SAR=1271;SRF=1217;SRP=526.684;SRR=562;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:15:9,6:9:316:6:216:-15.2751,0,-24.2634	1/1:44:0,44:0:0:44:1567:-141.321,-13.2453,0	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.5925	0/1:10:6,4:6:208:4:144:-10.3033,0,-16.0488	0/1:32:13,19:13:464:19:654:-49.5471,0,-32.4645	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:298:0,298:0:0:298:10463:-941.608,-89.7069,0	0/1:62:30,32:30:1080:32:1148:-84.966,0,-78.8494	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	0/1:75:31,44:31:1104:44:1568:-118.834,0,-77.0934	0/1:82:41,41:41:1450:41:1447:-105.841,0,-106.11	0/1:105:51,54:51:1816:54:1928:-142.189,0,-132.113	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:34:24,10:24:860:10:343:-20.9655,0,-67.4868	1/1:55:0,55:0:0:55:1952:-175.956,-16.5567,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:26:16,10:16:572:10:356:-24.5545,0,-43.9866	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:47:0,47:0:0:47:1628:-146.805,-14.1484,0	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	1/1:46:0,46:0:0:46:1632:-147.169,-13.8474,0	0/1:29:14,15:14:504:15:519:-38.3069,0,-36.9682	0/1:24:7,17:7:244:17:608:-47.8273,0,-15.0747	0/1:32:18,14:18:636:14:492:-34.9794,0,-47.9351	0/1:92:58,34:58:2068:34:1184:-79.1699,0,-158.694	1/1:66:0,66:0:0:66:2316:-208.702,-19.868,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:139:69,70:69:2452:70:2469:-180.621,0,-179.092	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	1/1:13:1,12:1:36:12:428:-35.2605,-0.315115,0	0/1:52:26,26:26:928:26:916:-67.1029,0,-68.1847	1/1:31:0,30:0:0:30:1068:-96.0724,-9.0309,0	1/1:97:0,97:0:0:97:3460:-311.613,-29.1999,0	0/1:73:39,34:39:1400:34:1216:-87.7714,0,-104.324	0/1:64:38,26:38:1355:26:917:-63.5795,0,-102.984	0/1:54:26,28:26:919:28:996:-73.6993,0,-66.7705	1/1:15:0,15:0:0:15:512:-46.4017,-4.51545,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:35:20,15:20:711:15:540:-38.4005,0,-53.7796	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	0/1:35:21,14:21:752:14:491:-33.9851,0,-57.4702	0/0:49:48,1:48:1712:1:36:0,-11.1522,-150.767	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:12:0,12:0:0:12:415:-37.6803,-3.61236,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:21:13,8:13:453:8:284:-19.5817,0,-34.778	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	0/1:82:39,42:39:1392:42:1421:-103.434,0,-100.836	0/0:23:22,1:22:763:1:36:0,-3.32541,-65.3903	0/1:21:5,16:5:180:16:558:-44.2261,0,-10.2304	1/1:74:1,73:1:36:73:2582:-229.031,-18.6779,0	1/1:80:0,80:0:0:80:2817:-253.77,-24.0824,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:37:13,24:13:464:24:838:-64.5982,0,-30.9594	0/1:20:9,11:9:324:11:392:-29.5995,0,-23.4853	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:37:24,13:24:851:13:456:-30.2351,0,-65.7713	0/1:36:31,5:31:1095:5:180:-5.71499,0,-88.022	0/1:466:230,236:230:8200:236:8348:-610.871,0,-597.738	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:54:25,29:25:884:29:1024:-76.217,0,-63.6227	1/1:86:0,86:0:0:86:3008:-270.954,-25.8886,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	1/1:89:0,89:0:0:89:3144:-283.189,-26.7917,0	1/1:31:0,31:0:0:31:1087:-98.1384,-9.33193,0	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:24:17,7:17:593:7:252:-15.8042,0,-46.47	0/1:65:35,30:35:1260:30:1076:-77.5859,0,-94.1385	1/1:60:0,60:0:0:60:2122:-191.248,-18.0618,0	1/1:73:0,73:0:0:73:2587:-233.08,-21.9752,0	1/1:73:0,73:0:0:73:2575:-231.998,-21.9752,0	0/1:124:65,59:65:2336:59:2103:-152.211,0,-173.172	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	0/1:40:24,16:24:864:16:576:-40.1338,0,-66.0414	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:423:182,241:182:6500:241:8516:-639.121,0,-457.751	0/1:613:303,310:303:10804:310:10960:-801.787,0,-787.739	0/1:62:50,12:50:1767:12:419:-19.3788,0,-140.649	1/1:64:0,64:0:0:64:2236:-201.503,-19.2659,0	1/1:154:0,154:0:0:154:5456:-491.172,-46.3586,0
chr02	24084846	.	AAC	GAT,AAT	106303	PASS	AB=0.553008,0.445489;ABP=67.9292,71.6647;AC=135,49;AF=0.733696,0.266304;AN=184;AO=3905,1188;CIGAR=1X1M1X,2M1X;DP=5104;DPB=5105.33;DPRA=18.685,1.00003;EPP=8482.61,2582.72;EPPR=0;GTI=2;LEN=3,1;MEANALT=1.62637,2.0625;MQM=59.991,60;MQMR=0;NS=92;NUMALT=2;ODDS=1.97547;PAIRED=0,0;PAIREDR=0;PAO=3,0.5;PQA=100,0;PQR=0;PRO=0.5;QA=136379,42323;QR=0;RO=0;RPL=3905,1188;RPP=8482.61,2582.72;RPPR=0;RPR=0,0;RUN=1,1;SAF=3905,1188;SAP=8482.61,2582.72;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40,0:0:0:40,0:1404,0:-126.657,-12.0412,0,-126.657,-12.0412,-126.657	1/1:58:0,58,0:0:0:58,0:2042,0:-184.054,-17.4597,0,-184.054,-17.4597,-184.054	1/2:57:0,29,28:0:0:29,28:1002,1008:-164.013,-82.6075,-73.8776,-81.7583,0,-73.3294	1/1:76:0,76,0:0:0:76,0:2661,0:-239.738,-22.8783,0,-239.738,-22.8783,-239.738	1/2:26:0,19,7:0:0:19,7:639,248:-72.3132,-20.557,-14.8374,-52.1056,0,-49.9983	1/2:13:0,7,6:0:0:7,6:252,216:-38.5463,-17.9843,-15.8771,-20.9217,0,-19.1156	1/2:56:0,24,32:0:0:24,32:835,1139:-161.075,-93.1854,-85.9607,-68.2411,0,-58.6082	1/2:45:0,29,16:0:0:29,16:1023,576:-130.653,-47.3585,-38.6286,-83.6522,0,-78.8357	1/1:70:0,70,0:0:0:70,0:2456,0:-221.295,-21.0721,0,-221.295,-21.0721,-221.295	1/1:36:0,36,0:0:0:36,0:1258,0:-113.521,-10.8371,0,-113.521,-10.8371,-113.521	1/1:22:0,22,0:0:0:22,0:775,0:-70.0726,-6.62266,0,-70.0726,-6.62266,-70.0726	1/2:54:0,23,31:0:0:23,31:791,1094:-153.67,-89.4363,-82.5126,-64.5814,0,-55.2495	1/1:45:0,45,0:0:0:45,0:1541,0:-138.978,-13.5464,0,-138.978,-13.5464,-138.978	1/2:36:0,16,20:0:0:16,20:568,703:-103.855,-57.5729,-52.7564,-46.6358,0,-40.6152	1/2:33:0,15,18:0:0:15,18:523,633:-94.411,-51.8765,-47.3611,-42.8844,0,-37.4659	1/2:37:0,14,22:0:0:14,22:489,788:-104.037,-64.2624,-60.048,-39.7678,0,-33.1451	1/1:20:0,20,0:0:0:20,0:715,0:-64.6776,-6.0206,0,-64.6776,-6.0206,-64.6776	1/1:14:0,14,0:0:0:14,0:491,0:-44.5223,-4.21442,0,-44.5223,-4.21442,-44.5223	1/1:11:0,11,0:0:0:11,0:388,0:-35.2578,-3.31133,0,-35.2578,-3.31133,-35.2578	1/2:110:0,64,45:0:0:64,45:2278,1599:-316.034,-130.372,-111.106,-185.736,0,-172.189	1/1:79:0,78,0:0:0:78,0:2750,0:-247.543,-23.4803,0,-247.543,-23.4803,-247.543	1/1:83:0,82,0:0:0:82,0:2918,0:-262.573,-24.6845,0,-262.573,-24.6845,-262.573	1/2:56:0,41,15:0:0:41,15:1426,527:-159.185,-43.2447,-30.9025,-116.29,0,-111.775	1/1:35:0,35,0:0:0:35,0:1233,0:-111.274,-10.5361,0,-111.274,-10.5361,-111.274	1/1:63:0,63,0:0:0:63,0:2178,0:-196.283,-18.9649,0,-196.283,-18.9649,-196.283	1/1:170:0,169,0:0:0:169,0:5930,0:-533.61,-50.8741,0,-533.61,-50.8741,-533.61	1/1:179:0,179,0:0:0:179,0:6259,0:-563.415,-53.8844,0,-563.415,-53.8844,-563.415	1/1:19:0,19,0:0:0:19,0:645,0:-58.3672,-5.71957,0,-58.3672,-5.71957,-58.3672	1/2:172:0,113,59:0:0:113,59:3956,2112:-494.094,-172.228,-138.212,-321.861,0,-304.1	1/2:100:0,58,42:0:0:58,42:2020,1508:-287.309,-123.051,-105.591,-164.292,0,-151.649	1/2:56:0,39,17:0:0:39,17:1359,612:-160.805,-50.2959,-38.5558,-110.865,0,-105.748	1/1:4:0,4,0:0:0:4,0:139,0:-12.8525,-1.20412,0,-12.8525,-1.20412,-12.8525	1/1:8:0,8,0:0:0:8,0:278,0:-25.3568,-2.40824,0,-25.3568,-2.40824,-25.3568	.:.:.:.:.:.:.:.	1/1:5:0,5,0:0:0:5,0:171,0:-15.7259,-1.50515,0,-15.7259,-1.50515,-15.7259	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/2:118:0,54,64:0:0:54,64:1893,2280:-340.237,-186.196,-169.94,-154.394,0,-135.128	1/2:66:0,46,20:0:0:46,20:1627,711:-190.811,-58.295,-44.4477,-132.87,0,-126.85	1/1:27:0,27,0:0:0:27,0:946,0:-85.4539,-8.12781,0,-85.4539,-8.12781,-85.4539	.:.:.:.:.:.:.:.	1/1:80:0,80,0:0:0:80,0:2796,0:-251.882,-24.0824,0,-251.882,-24.0824,-251.882	1/1:9:0,9,0:0:0:9,0:308,0:-28.0517,-2.70927,0,-28.0517,-2.70927,-28.0517	1/2:67:0,57,10:0:0:57,10:1997,360:-191.899,-29.4104,-12.2517,-162.524,0,-159.514	1/2:27:0,14,13:0:0:14,13:493,456:-77.5975,-37.4598,-33.2454,-40.4889,0,-36.5755	1/2:37:0,12,25:0:0:12,25:407,891:-105.98,-72.983,-69.3707,-33.3414,0,-25.8157	1/1:66:0,66,0:0:0:66,0:2333,0:-210.23,-19.868,0,-210.23,-19.868,-210.23	1/2:63:0,41,22:0:0:41,22:1441,784:-181.55,-64.2613,-51.919,-117.643,0,-111.02	1/2:118:0,85,33:0:0:85,33:2979,1184:-339.335,-96.9343,-71.3468,-242.757,0,-232.823	1/2:56:0,18,38:0:0:18,38:621,1352:-160.985,-110.541,-105.123,-50.7923,0,-39.3531	1/1:62:0,61,0:0:0:61,0:2129,0:-191.532,-18.3628,0,-191.532,-18.3628,-191.532	1/2:85:0,55,30:0:0:55,30:1900,1080:-242.845,-88.4823,-71.9257,-154.717,0,-145.686	1/2:7:0,4,3:0:0:4,3:136,104:-19.8269,-8.79971,-7.59559,-11.3708,0,-10.4677	1/1:83:0,83,0:0:0:83,0:2917,0:-262.769,-24.9855,0,-262.769,-24.9855,-262.769	1/1:31:0,31,0:0:0:31,0:1082,0:-97.687,-9.33193,0,-97.687,-9.33193,-97.687	1/2:7:0,2,5:0:0:2,5:69,180:-20.6482,-15.0469,-14.4449,-5.95048,0,-4.44533	1/2:93:0,53,40:0:0:53,40:1868,1432:-269.226,-117.136,-101.182,-152.445,0,-140.403	1/1:38:0,38,0:0:0:38,0:1342,0:-121.08,-11.4391,0,-121.08,-11.4391,-121.08	1/2:7:0,2,5:0:0:2,5:70,180:-20.7395,-15.0469,-14.4449,-6.04527,0,-4.54012	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/2:48:0,26,22:0:0: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chr02	24095516	.	C	G	32874.9	PASS	AB=0.568016;ABP=140.958;AC=47;AF=0.252688;AN=186;AO=1950;CIGAR=1X;DP=5869;DPB=5869;DPRA=1.37929;EPP=4220.03;EPPR=8504.32;GTI=6;LEN=1;MEANALT=1.06383;MQM=60;MQMR=59.9944;NS=93;NUMALT=1;ODDS=1.73777;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68356;QR=138510;RO=3915;RPL=2;RPP=4220.03;RPPR=8504.32;RPR=1948;RUN=1;SAF=0;SAP=4237.38;SAR=1950;SRF=0;SRP=8504.32;SRR=3915;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1038:0:0:0,-9.0309,-93.7276	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:109:53,56:53:1879:56:1987:-146.291,0,-136.576	0/0:86:86,0:86:3039:0:0:0,-25.8886,-273.739	0/1:32:12,20:12:432:20:699:-53.5995,0,-29.5882	0/1:63:26,37:26:914:37:1304:-98.6937,0,-63.6098	0/1:67:32,35:32:1131:35:1224:-90.2919,0,-81.9287	0/1:106:33,73:33:1184:73:2512:-194.418,0,-74.9591	0/0:53:53,0:53:1851:0:0:0,-15.9546,-166.869	0/0:58:58,0:58:2030:0:0:0,-17.4597,-182.972	0/0:28:28,0:28:963:0:0:0,-8.42884,-86.9773	0/1:98:44,54:44:1550:54:1860:-138.174,0,-110.289	0/0:54:54,0:54:1898:0:0:0,-16.2556,-171.097	0/1:35:19,16:19:671:16:568:-40.9158,0,-50.1797	0/1:59:23,36:23:828:36:1249:-94.9489,0,-57.0833	0/1:38:17,21:17:599:21:740:-55.4842,0,-42.799	0/0:16:16,0:16:559:0:0:0,-4.81648,-50.6376	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5438	0/1:88:40,48:40:1436:48:1685:-125.444,0,-103.047	0/0:142:142,0:142:5017:0:0:0,-42.7463,-451.683	0/0:109:109,0:109:3882:0:0:0,-32.8123,-349.575	0/1:64:24,40:24:856:40:1403:-107.298,0,-58.0952	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/0:128:128,0:128:4551:0:0:0,-38.5318,-409.756	0/0:198:198,0:198:7048:0:0:0,-59.6039,-634.384	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:159:69,89:69:2444:89:3129:-233.916,0,-172.291	0/1:69:32,37:32:1140:37:1291:-95.7163,0,-82.1381	0/1:80:38,42:38:1349:42:1463:-107.879,0,-97.6259	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:178:79,99:79:2731:99:3399:-252.544,0,-192.449	0/1:84:29,55:29:1018:55:1932:-148.867,0,-66.6439	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:51:51,0:51:1802:0:0:0,-15.3525,-162.442	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:146:78,67:78:2760:67:2367:-169.277,0,-204.632	0/1:39:18,21:18:644:21:752:-56.2661,0,-46.5504	0/1:44:22,22:22:788:22:765:-55.9224,0,-57.9995	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.136	0/1:109:42,67:42:1491:67:2344:-178.404,0,-101.672	0/1:104:42,62:42:1476:62:2181:-165.247,0,-101.825	0/1:62:32,30:32:1139:30:1061:-77.1355,0,-84.1545	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/1:69:24,45:24:856:45:1595:-123.068,0,-56.59	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:57:57,0:57:2017:0:0:0,-17.1587,-181.801	0/0:54:54,0:54:1935:0:0:0,-16.2556,-174.426	0/1:6:5,1:5:180:1:32:-1.39313,0,-14.7459	0/1:180:78,102:78:2764:102:3583:-268.494,0,-194.815	0/0:23:22,0:22:792:0:0:0,-6.62266,-71.2458	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:39:20,19:20:716:19:680:-49.789,0,-53.0275	0/0:85:85,0:85:3022:0:0:0,-25.5875,-272.211	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:94:94,0:94:3295:0:0:0,-28.2968,-296.769	0/1:71:42,29:42:1487:29:1032:-71.8203,0,-112.751	0/1:37:22,15:22:788:15:532:-37.075,0,-60.1067	0/0:46:46,0:46:1634:0:0:0,-13.8474,-147.347	0/1:129:60,68:60:2107:68:2388:-176.285,0,-151.005	0/1:207:38,169:38:1341:169:5928:-471.323,0,-58.6748	0/1:13:6,7:6:197:7:240:-18.0213,0,-14.1379	0/1:22:7,15:7:244:15:527:-41.1375,0,-15.6768	0/1:23:9,14:9:311:14:504:-38.7744,0,-21.4	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:96:96,0:96:3402:0:0:0,-28.8989,-306.394	0/1:55:37,18:37:1294:18:648:-42.0952,0,-100.203	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.759	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:45:15,30:15:536:30:1042:-80.5416,0,-35.0285	0/1:42:12,30:12:417:30:1055:-82.6162,0,-25.217	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:70:70,0:70:2472:0:0:0,-21.0721,-222.733	0/1:63:32,31:32:1144:31:1095:-79.8942,0,-84.3046	0/1:204:103,101:103:3627:101:3564:-259.559,0,-265.227	0/0:44:44,0:44:1551:0:0:0,-13.2453,-139.881	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:30:30,0:30:1046:0:0:0,-9.0309,-94.4484	0/1:136:48,88:48:1676:88:3082:-236.669,0,-110.184	0/1:16:8,8:8:275:8:276:-20.3588,0,-20.267	0/1:61:26,35:26:919:35:1214:-91.198,0,-64.6633	0/0:41:41,0:41:1451:0:0:0,-12.3422,-130.885	0/1:15:9,6:9:320:6:208:-14.5436,0,-24.6269	0/1:72:40,32:40:1353:32:1115:-78.9823,0,-100.385	0/1:73:26,47:26:928:47:1633:-125.281,0,-61.8631	0/0:128:128,0:128:4529:0:0:0,-38.5318,-407.778	0/0:78:78,0:78:2749:0:0:0,-23.4803,-247.653
chr02	24095571	.	A	G	82029.8	PASS	AB=0.432409;ABP=140.389;AC=139;AF=0.747312;AN=186;AO=4012;CIGAR=1X;DP=5979;DPB=5979;DPRA=0;EPP=8706.27;EPPR=4269.95;GTI=6;LEN=1;MEANALT=1.02151;MQM=59.9808;MQMR=60;NS=93;NUMALT=1;ODDS=0.584703;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143703;QR=70421;RO=1965;RPL=4012;RPP=8714.96;RPPR=4269.95;RPR=0;RUN=1;SAF=1;SAP=8706.27;SAR=4011;SRF=0;SRP=4269.95;SRR=1965;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:69:1,68:1:36:68:2436:-215.897,-17.1728,0	0/1:113:60,53:60:2160:53:1885:-135.91,0,-160.65	1/1:95:0,95:0:0:95:3393:-304.395,-28.5979,0	0/1:33:21,12:21:752:12:432:-29.2872,0,-58.0723	0/1:65:38,27:38:1364:27:968:-67.8704,0,-103.494	0/1:69:35,33:35:1260:33:1184:-86.0385,0,-92.8756	0/1:108:74,34:74:2641:34:1224:-77.9558,0,-205.424	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:56:0,56:0:0:56:1993:-179.642,-16.8577,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:95:53,42:53:1908:42:1508:-107.417,0,-143.4	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:35:16,19:16:576:19:680:-50.9931,0,-41.6389	0/1:61:38,23:38:1364:23:828:-56.4813,0,-104.698	0/1:39:20,19:20:720:19:680:-49.789,0,-53.3886	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:18:0,18:0:0:18:636:-57.5675,-5.41854,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:88:49,39:49:1752:39:1400:-99.8085,0,-131.473	1/1:143:0,143:0:0:143:5124:-461.302,-43.0473,0	1/1:109:0,109:0:0:109:3920:-352.991,-32.8123,0	0/1:64:39,25:39:1400:25:900:-62.0551,0,-107.033	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:127:0,127:0:0:127:4537:-408.496,-38.2308,0	1/1:204:0,204:0:0:204:7316:-658.488,-61.4101,0	1/1:29:0,28:0:0:28:1004:-90.3161,-8.42884,0	0/1:164:92,72:92:3308:72:2583:-183.349,0,-248.569	0/1:70:38,32:38:1360:32:1148:-82.5577,0,-101.628	0/1:80:42,38:42:1512:38:1368:-99.3384,0,-112.292	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:175:95,80:95:3400:80:2875:-206.306,0,-253.535	0/1:83:54,29:54:1928:29:1036:-68.5684,0,-148.811	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:51:0,51:0:0:51:1836:-165.391,-15.3525,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:145:63,82:63:2260:82:2944:-221.544,0,-160.013	0/1:39:21,18:21:756:18:648:-46.9117,0,-56.6271	0/1:41:20,21:20:705:21:756:-56.025,0,-51.4306	1/1:86:0,86:0:0:86:3092:-278.506,-25.8886,0	0/1:108:65,43:65:2328:43:1548:-107.102,0,-177.269	0/1:107:64,43:64:2296:43:1520:-104.882,0,-174.691	0/1:60:30,30:30:1072:30:1080:-79.4515,0,-78.7307	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:69:47,22:47:1672:22:784:-50.1128,0,-129.996	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	0/1:182:101,81:101:3605:81:2912:-207.527,0,-269.868	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:40:20,20:20:716:20:716:-52.7265,0,-52.7265	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:95:0,95:0:0:95:3400:-306.215,-28.5979,0	0/1:73:29,44:29:1044:44:1580:-120.516,0,-72.2996	0/1:37:15,22:15:540:22:792:-60.4676,0,-37.7984	1/1:48:0,48:0:0:48:1677:-151.212,-14.4494,0	0/1:132:71,61:71:2552:61:2192:-157.809,0,-190.194	0/1:209:170,39:170:6100:39:1389:-62.3917,0,-486.184	0/1:14:7,7:7:237:7:248:-18.4498,0,-17.4446	0/1:23:16,7:16:572:7:252:-16.1053,0,-44.8897	0/1:23:14,9:14:504:9:316:-21.8552,0,-38.7744	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	0/1:57:18,39:18:648:39:1396:-108.78,0,-41.4932	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:42:31,11:31:1108:11:396:-23.3395,0,-87.3877	0/1:42:30,12:30:1080:12:428:-26.2155,0,-84.87	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:72:0,72:0:0:72:2561:-230.739,-21.6742,0	0/1:65:34,31:34:1220:31:1112:-80.8244,0,-90.5399	0/1:209:103,106:103:3688:106:3792:-278.477,0,-269.207	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:141:91,50:91:3272:50:1792:-119.117,0,-252.254	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/1:61:36,25:36:1284:25:896:-62.5975,0,-97.5006	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:74:33,41:33:1173:41:1460:-109.42,0,-83.5993	0/1:71:45,26:45:1620:26:932:-62.8257,0,-124.717	1/1:127:0,127:0:0:127:4537:-408.496,-38.2308,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0
chr02	24098280	.	CAAAC	TGAAG,CGAAC	169835	PASS	AB=0.493944,0.499009;ABP=4.45683,3.04903;AC=138,48;AF=0.741935,0.258065;AN=186;AO=6265,2269;CIGAR=2X2M1X,1M1X3M;DP=8587;DPB=8587;DPRA=0,1.1155;EPP=13555.2,4886.75;EPPR=0;GTI=0;LEN=5,1;MEANALT=2.05376,2.58824;MQM=39.9234,53.8325;MQMR=0;NS=93;NUMALT=2;ODDS=1.86632;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=218514,80653;QR=0;RO=0;RPL=6,5;RPP=13555.2,4886.75;RPPR=0;RPR=6259,2264;RUN=1,1;SAF=0,0;SAP=13607.3,4930.08;SAR=6265,2269;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54,0:0:0:54,0:1887,0:-156.754,-16.2556,0,-156.754,-16.2556,-156.754	1/1:41:0,41,0:0:0:41,0:1442,0:-121.34,-12.3422,0,-121.34,-12.3422,-121.34	1/2:156:0,97,57:0:0:97,57:3362,2040:-418.526,-165.64,-136.44,-252.89,0,-235.732	1/1:247:0,244,0:0:0:244,0:8524,0:-739.437,-73.4513,0,-739.437,-73.4513,-739.437	1/2:89:0,32,57:0:0:32,57:1108,2035:-251.527,-165.598,-155.965,-86.2699,0,-69.1112	1/2:49:0,24,25:0:0:24,25:853,896:-136.919,-73.2104,-65.9857,-64.051,0,-56.5252	1/2:72:0,40,32:0:0:40,32:1370,1144:-199.533,-93.4772,-81.436,-106.4,0,-96.7669	1/2:136:0,59,77:0:0:59,77:2062,2711:-375.422,-219.171,-201.41,-156.589,0,-133.409	1/1:81:0,80,0:0:0:80,0:2761,0:-232.095,-24.0824,0,-232.095,-24.0824,-232.095	1/1:70:0,69,1:0:0:69,1:2392,36:-206.934,-20.7711,0,-203.998,-17.4764,-203.697	1/1:61:0,60,0:0:0:60,0:2064,0:-178.827,-18.0618,0,-178.827,-18.0618,-178.827	1/2:106:0,54,50:0:0:54,50:1861,1741:-278.573,-140.989,-124.733,-137.655,0,-122.604	1/1:85:0,85,0:0:0:85,0:2986,0:-250.806,-25.5876,0,-250.806,-25.5876,-250.806	1/2:53:0,27,26:0:0:27,26:938,917:-147.218,-74.8463,-66.7185,-72.7138,0,-64.887	1/2:54:0,31,23:0:0:31,23:1079,820:-151.409,-67.022,-57.6901,-84.7344,0,-77.8107	1/2:63:0,33,29:0:0:33,29:1163,1039:-172.131,-84.6461,-74.7121,-87.622,0,-78.8921	1/1:27:0,27,0:0:0:27,0:918,0:-78.4519,-8.12781,0,-78.4519,-8.12781,-78.4519	1/1:19:0,19,0:0:0:19,0:658,0:-55.2181,-5.71957,0,-55.2181,-5.71957,-55.2181	1/1:23:0,23,0:0:0:23,0:804,0:-65.8881,-6.92369,0,-65.8881,-6.92369,-65.8881	1/2:112:0,63,48:0:0:63,48:2209,1710:-312.058,-138.693,-119.729,-173.362,0,-158.912	1/1:137:0,136,0:0:0:136,0:4720,0:-404.294,-40.9401,0,-404.294,-40.9401,-404.294	1/1:120:0,119,0:0:0:119,0:4151,0:-365.343,-35.8226,0,-365.343,-35.8226,-365.343	1/2:140:0,68,71:0:0:68,71:2382,2530:-392.367,-205.839,-185.369,-186.525,0,-165.151	1/1:75:0,75,0:0:0:75,0:2611,0:-224.007,-22.5773,0,-224.007,-22.5773,-224.007	1/1:96:0,95,0:0:0:95,0:3325,0:-284.653,-28.5979,0,-284.653,-28.5979,-284.653	1/1:331:0,330,0:0:0:330,0:11483,0:-1012.8,-99.3399,0,-1012.8,-99.3399,-1012.8	1/1:243:0,242,1:0:0:242,1:8481,36:-725.066,-72.8493,0,-722.133,-69.5571,-721.832	1/1:22:0,22,0:0:0:22,0:779,0:-67.8347,-6.62266,0,-67.8347,-6.62266,-67.8347	1/2:233:0,83,149:0:0:83,149:2911,5297:-659.182,-431.236,-406.251,-227.93,0,-183.077	1/2:130:0,61,67:0:0:61,67:2093,2379:-353.131,-192.87,-174.507,-160.313,0,-140.144	1/2:96:0,33,63:0:0:33,63:1133,2250:-272.413,-183.502,-173.568,-89.2523,0,-70.2874	1/2:15:0,8,7:0:0:8,7:283,252:-42.9546,-20.8798,-18.4716,-22.4251,0,-20.3179	1/1:17:0,17,0:0:0:17,0:576,0:-49.1887,-5.11751,0,-49.1887,-5.11751,-49.1887	1/1:3:0,3,0:0:0:3,0:108,0:-9.40261,-0.90309,0,-9.40261,-0.90309,-9.40261	1/1:4:0,4,0:0:0:4,0:133,0:-11.7968,-1.20412,0,-11.7968,-1.20412,-11.7968	1/2:18:0,12,6:0:0:12,6:422,216:-49.21,-17.7497,-14.1374,-31.8056,0,-29.9994	1/2:203:0,94,108:0:0:94,108:3314,3837:-573.439,-312.584,-284.287,-261.002,0,-228.491	1/2:157:0,58,99:0:0:58,99:2046,3540:-444.398,-288.13,-270.671,-156.61,0,-126.808	1/1:64:0,63,0:0:0:63,0:2201,0:-186.043,-18.9649,0,-186.043,-18.9649,-186.043	1/2:6:0,5,1:0:0:5,1:174,36:-16.8809,-3.29214,-1.78699,-13.9441,0,-13.6431	1/1:118:0,118,0:0:0:118,0:4108,0:-351.123,-35.5215,0,-351.123,-35.5215,-351.123	1/1:22:0,22,0:0:0:22,0:780,0:-67.6551,-6.62266,0,-67.6551,-6.62266,-67.6551	1/2:235:0,132,101:0:0:132,101:4597,3589:-644.217,-291.209,-251.473,-353.006,0,-322.602	1/2:44:0,16,28:0:0:16,28:550,980:-122.126,-79.9374,-75.1209,-42.5234,0,-34.0946	1/2:39:0,18,21:0:0:18,21:626,748:-110.628,-61.1689,-55.7504,-49.8057,0,-43.484	1/1:131:0,130,0:0:0:130,0:4542,0:-398.148,-39.1339,0,-398.148,-39.1339,-398.148	1/2:85:0,50,35:0:0:50,35:1717,1235:-230.617,-100.485,-85.4335,-130.472,0,-119.936	1/2:159:0,75,83:0:0:75,83:2617,2951:-442.607,-239.745,-217.167,-202.856,0,-177.871	1/2:73:0,41,32:0:0:41,32:1453,1123:-206.486,-91.3679,-79.0257,-115.466,0,-105.833	1/1:185:0,185,0:0:0:185,0:6525,0:-565.047,-55.6906,0,-565.047,-55.6906,-565.047	1/2:128:0,60,68:0:0:60,68:2117,2428:-365.029,-197.944,-179.883,-167.434,0,-146.964	1/1:3:0,3,0:0:0:3,0:108,0:-9.80756,-0.90309,0,-9.80756,-0.90309,-9.80756	1/1:149:0,149,0:0:0:149,0:5196,0:-433.733,-44.8535,0,-433.733,-44.8535,-433.733	1/1:79:0,78,0:0:0:78,0:2685,0:-235.617,-23.4803,0,-235.617,-23.4803,-235.617	1/1:8:0,8,0:0:0:8,0:287,0:-23.9147,-2.40824,0,-23.9147,-2.40824,-23.9147	1/2:154:0,85,66:0:0:85,66:2952,2332:-415.217,-189.013,-163.425,-226.276,0,-206.408	1/1:47:0,47,0:0:0:47,0:1670,0:-143.963,-14.1484,0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chr02	24098296	.	CA	GG,CG	171851	PASS	AB=0.492544,0.505044;ABP=5.21225,4.01794;AC=138,48;AF=0.741935,0.258065;AN=186;AO=6271,2307;CIGAR=2X,1M1X;DP=8601;DPB=8601;DPRA=0,1.15023;EPP=13620.3,5012.6;EPPR=0;GTI=0;LEN=2,1;MEANALT=1.78495,2.23077;MQM=39.907,53.6844;MQMR=0;NS=93;NUMALT=2;ODDS=2.58639;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=221272,82317;QR=0;RO=0;RPL=6271,2307;RPP=13620.3,5012.6;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13620.3,5012.6;SAR=6271,2307;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53,0:0:0:53,0:1840,0:-153.301,-15.9546,0,-153.301,-15.9546,-153.301	1/1:41:0,41,0:0:0:41,0:1459,0:-122.334,-12.3422,0,-122.334,-12.3422,-122.334	1/2:156:0,97,59:0:0:97,59:3405,2112:-426.434,-171.478,-142.278,-255.3,0,-237.539	1/1:247:0,246,0:0:0:246,0:8651,0:-749.091,-74.0534,0,-749.091,-74.0534,-749.091	1/2:91:0,32,59:0:0:32,59:1122,2094:-257.148,-170.315,-160.682,-87.1738,0,-69.413	1/2:48:0,23,25:0:0:23,25:828,892:-134.468,-72.8514,-65.9277,-61.9591,0,-54.4333	1/2:69:0,38,30:0:0:38,30:1347,1072:-191.047,-87.2573,-75.8182,-103.788,0,-94.7569	1/2:136:0,59,77:0:0:59,77:2086,2755:-380.611,-222.596,-204.835,-158.356,0,-135.177	1/1:81:0,81,0:0:0:81,0:2845,0:-237.691,-24.3834,0,-237.691,-24.3834,-237.691	1/1:70:0,69,1:0:0:69,1:2434,36:-210.647,-20.7711,0,-207.711,-17.4764,-207.41	1/1:61:0,60,0:0:0:60,0:2099,0:-181.283,-18.0618,0,-181.283,-18.0618,-181.283	1/2:106:0,55,51:0:0:55,51:1926,1836:-290.245,-149.008,-132.451,-141.576,0,-126.223	1/1:85:0,85,0:0:0:85,0:3014,0:-251.867,-25.5876,0,-251.867,-25.5876,-251.867	1/2:56:0,27,29:0:0:27,29:955,1024:-157.239,-83.4709,-75.3431,-74.1125,0,-65.3826	1/2:54:0,31,23:0:0:31,23:1110,824:-154.188,-67.3746,-58.0426,-87.165,0,-80.2413	1/2:63:0,32,31:0:0:32,31:1141,1099:-176.057,-89.493,-79.86,-86.9075,0,-77.5756	1/1:27:0,27,0:0:0:27,0:946,0:-79.8921,-8.12781,0,-79.8921,-8.12781,-79.8921	1/1:19:0,19,0:0:0:19,0:663,0:-55.5338,-5.71957,0,-55.5338,-5.71957,-55.5338	1/1:23:0,23,0:0:0:23,0:804,0:-65.9554,-6.92369,0,-65.9554,-6.92369,-65.9554	1/2:113:0,63,50:0:0:63,50:2234,1772:-318.828,-144.095,-125.13,-175.081,0,-160.029	1/1:137:0,135,0:0:0:135,0:4730,0:-403.698,-40.6391,0,-403.698,-40.6391,-403.698	1/1:120:0,119,0:0:0:119,0:4202,0:-368.724,-35.8226,0,-368.724,-35.8226,-368.724	1/2:139:0,68,71:0:0:68,71:2393,2552:-395.218,-208.126,-187.656,-187.441,0,-166.068	1/1:75:0,75,0:0:0:75,0:2624,0:-225.268,-22.5773,0,-225.268,-22.5773,-225.268	1/1:96:0,96,0:0:0:96,0:3366,0:-288.167,-28.8989,0,-288.167,-28.8989,-288.167	1/1:330:0,329,0:0:0:329,0:11634,0:-1022.35,-99.0389,0,-1022.35,-99.0389,-1022.35	1/1:242:0,240,1:0:0:240,1:8528,36:-726.179,-72.2472,0,-723.246,-69.3074,-722.945	1/1:22:0,22,0:0:0:22,0:792,0:-68.7444,-6.62266,0,-68.7444,-6.62266,-68.7444	1/2:232:0,82,149:0:0:82,149:2888,5335:-660.232,-434.297,-409.613,-225.927,0,-181.073	1/2:129:0,62,67:0:0:62,67:2191,2380:-359.479,-192.593,-173.93,-167.227,0,-147.058	1/2:97:0,32,64:0:0:32,64:1133,2300:-276.395,-187.372,-177.739,-89.1291,0,-69.8632	1/2:15:0,8,7:0:0:8,7:286,248:-42.7963,-20.5179,-18.1096,-22.6271,0,-20.5198	1/1:17:0,17,0:0:0:17,0:609,0:-51.6058,-5.11751,0,-51.6058,-5.11751,-51.6058	1/1:3:0,3,0:0:0:3,0:108,0:-9.40261,-0.90309,0,-9.40261,-0.90309,-9.40261	1/1:4:0,4,0:0:0:4,0:144,0:-12.5341,-1.20412,0,-12.5341,-1.20412,-12.5341	1/2:18:0,12,6:0:0:12,6:421,212:-48.9076,-17.389,-13.7766,-31.8597,0,-30.0535	1/2:203:0,95,108:0:0:95,108:3366,3835:-575.707,-312.569,-283.971,-263.485,0,-230.974	1/2:160:0,58,102:0:0:58,102:2063,3660:-455.595,-297.995,-280.536,-157.943,0,-127.238	1/1:64:0,64,0:0:0:64,0:2275,0:-190.958,-19.2659,0,-190.958,-19.2659,-190.958	1/2:6:0,5,1:0:0:5,1:176,36:-17.0288,-3.29214,-1.78699,-14.0926,0,-13.7916	1/1:117:0,117,0:0:0:117,0:4126,0:-351.847,-35.2205,0,-351.847,-35.2205,-351.847	1/1:22:0,22,0:0:0:22,0:792,0:-68.4954,-6.62266,0,-68.4954,-6.62266,-68.4954	1/2:233:0,131,102:0:0:131,102:4647,3648:-651.838,-295.424,-255.989,-356.76,0,-326.055	1/2:44:0,16,28:0:0:16,28:554,1004:-124.457,-82.0988,-77.2823,-42.6969,0,-34.268	1/2:41:0,18,23:0:0:18,23:636,824:-117.609,-67.3953,-61.9768,-50.5628,0,-43.6391	1/1:130:0,129,0:0:0:129,0:4571,0:-398.463,-38.8329,0,-398.463,-38.8329,-398.463	1/2:86:0,50,36:0:0:50,36:1726,1279:-234.09,-104.086,-89.0346,-130.344,0,-119.507	1/2:159:0,74,84:0:0:74,84:2607,2990:-445.682,-243.027,-220.751,-202.642,0,-177.356	1/2:72:0,41,31:0:0:41,31:1454,1078:-202.803,-87.6484,-75.3062,-115.501,0,-106.169	1/1:185:0,185,0:0:0:185,0:6528,0:-564.349,-55.6906,0,-564.349,-55.6906,-564.349	1/2:126:0,58,68:0:0:58,68:2063,2440:-361.8,-199.053,-181.593,-163.099,0,-142.628	1/1:3:0,3,0:0:0:3,0:97,0:-8.86372,-0.90309,0,-8.86372,-0.90309,-8.86372	1/1:148:0,148,0:0:0:148,0:5202,0:-432.528,-44.5524,0,-432.528,-44.5524,-432.528	1/1:79:0,79,0:0:0:79,0:2764,0:-242.586,-23.7814,0,-242.586,-23.7814,-242.586	1/1:8:0,8,0:0:0:8,0:288,0:-23.9731,-2.40824,0,-23.9731,-2.40824,-23.9731	1/2:154:0,87,66:0:0:87,66:3065,2324:-422.552,-188.293,-162.104,-234.419,0,-214.551	1/1:47:0,47,0:0:0:47,0:1660,0:-143.505,-14.1484,0,-143.505,-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chr02	24105481	.	A	T	61674.9	PASS	AB=0.240035;ABP=15333.9;AC=90;AF=0.478723;AN=188;AO=6282;CIGAR=1X;DP=26311;DPB=26311;DPRA=40.8339;EPP=13566.1;EPPR=43298;GTI=28;LEN=1;MEANALT=1.07609;MQM=59.9163;MQMR=59.9073;NS=94;NUMALT=1;ODDS=0.084073;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224669;QR=717142;RO=20022;RPL=9;RPP=13566.1;RPPR=43298;RPR=6273;RUN=1;SAF=6282;SAP=13644.2;SAR=0;SRF=20022;SRP=43480.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:108:81,27:81:2901:27:968:-54.9261,0,-228.795	0/1:477:364,113:364:13047:113:4052:-221.275,0,-1030.44	0/1:312:263,49:263:9362:49:1737:-62.6775,0,-748.349	0/1:669:490,179:490:17567:179:6405:-375.092,0,-1379.24	0/1:138:121,17:121:4352:17:608:-13.5099,0,-350.309	0/1:134:118,16:118:4228:16:576:-11.837,0,-340.362	0/1:502:421,81:421:15061:81:2885:-108.768,0,-1203.26	0/1:314:209,105:209:7501:105:3765:-244.511,0,-580.595	0/1:304:217,87:217:7778:87:3109:-188.522,0,-608.521	0/1:360:283,77:283:10120:77:2757:-139.999,0,-802.354	0/1:152:125,27:125:4449:27:964:-41.3193,0,-354.822	0/1:171:147,24:147:5288:24:860:-26.2457,0,-424.573	0/1:230:182,48:182:6548:48:1724:-86.2085,0,-519.723	0/1:124:103,21:103:3704:21:756:-31.0395,0,-296.233	0/1:197:170,27:170:6116:27:957:-27.141,0,-491.143	0/1:144:124,20:124:4456:20:720:-21.7805,0,-357.843	0/1:185:130,54:130:4676:54:1940:-119.127,0,-365.249	0/1:206:185,20:185:6630:20:716:-2.69684,0,-534.697	0/1:148:107,41:107:3852:41:1476:-88.5837,0,-302.321	0/1:664:548,116:548:19648:116:4149:-173.708,0,-1567.8	0/1:506:426,80:426:15240:80:2853:-104.458,0,-1217.86	0/1:546:430,116:430:15370:116:4164:-210.575,0,-1218.49	0/1:289:189,100:189:6754:100:3592:-236.483,0,-520.889	0/1:418:303,115:303:10836:115:4081:-241.513,0,-848.655	0/1:237:189,48:189:6773:48:1709:-82.7451,0,-538.283	0/1:1199:911,288:911:32659:288:10300:-565.968,0,-2576.62	0/1:407:301,106:301:10792:106:3808:-220.397,0,-847.862	0/1:134:105,29:105:3772:29:1044:-53.9368,0,-299.304	0/1:558:466,92:466:16723:92:3304:-129.603,0,-1336.72	0/1:253:218,35:218:7763:35:1256:-37.1813,0,-622.53	0/1:274:219,55:219:7827:55:1980:-95.9922,0,-621.972	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:48:39,9:39:1389:9:305:-13.3278,0,-110.857	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:544:361,183:361:12919:183:6549:-425.665,0,-998.759	0/1:583:375,208:375:13429:208:7423:-492.185,0,-1032.75	0/1:222:164,58:164:5900:58:2088:-121.361,0,-464.268	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:390:303,86:303:10847:86:3077:-159.775,0,-858.101	0/1:153:116,37:116:4176:37:1328:-73.7646,0,-329.954	0/1:382:315,67:315:11240:67:2408:-101.983,0,-896.345	0/1:181:147,34:147:5276:34:1224:-55.9806,0,-420.488	0/1:181:150,31:150:5381:31:1112:-45.9049,0,-429.932	0/1:412:313,99:313:11197:99:3539:-194.647,0,-883.49	0/1:247:213,34:213:7637:34:1224:-36.1126,0,-612.988	0/1:427:258,169:258:9254:169:6045:-415.575,0,-704.271	0/1:324:222,102:222:7947:102:3591:-225.86,0,-617.389	0/1:365:262,103:262:9379:103:3688:-222.24,0,-734.191	0/1:584:400,184:400:14327:184:6562:-414.858,0,-1113.31	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:552:408,143:408:14630:143:5132:-295.777,0,-1150.17	0/1:99:89,10:89:3166:10:360:-2.94233,0,-255.231	0/0:23:21,2:21:737:2:72:0,-0.0869673,-59.8139	0/1:382:310,72:310:11125:72:2558:-115.445,0,-885.946	0/1:191:134,57:134:4816:57:2044:-126.735,0,-375.599	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:44:27,17:27:972:17:612:-42.1681,0,-74.548	0/1:203:180,23:180:6449:23:828:-13.735,0,-519.382	0/1:343:262,80:262:9405:80:2856:-153.964,0,-743.09	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:477:344,133:344:12271:133:4761:-285.051,0,-960.565	0/1:548:456,92:456:16306:92:3300:-132.253,0,-1302.23	0/1:192:134,58:134:4786:58:2080:-129.668,0,-373.096	0/1:282:230,52:230:8226:52:1845:-81.4373,0,-655.449	0/1:470:382,88:382:13625:88:3141:-141.424,0,-1084.36	0/1:292:177,115:177:6349:115:4140:-284.876,0,-483.555	0/1:51:41,10:41:1472:10:360:-17.3918,0,-117.415	0/1:174:107,67:107:3836:67:2384:-162.439,0,-293.046	0/1:209:174,35:174:6260:35:1234:-48.4457,0,-500.575	0/1:54:42,12:42:1512:12:428:-22.6032,0,-120.101	0/1:393:292,101:292:10449:101:3602:-206.061,0,-822.013	0/0:157:146,11:146:5229:11:396:0,-11.279,-434.761	0/1:459:319,140:319:11419:140:4991:-311.012,0,-889.404	0/1:582:437,145:437:15670:145:5197:-292.667,0,-1234.79	0/1:217:149,68:149:5326:68:2444:-154.891,0,-413.59	0/1:213:143,70:143:5091:70:2493:-160.502,0,-394.16	0/1:29:20,9:20:720:9:324:-20.776,0,-56.2067	0/1:417:308,109:308:11024:109:3889:-224.656,0,-866.499	0/1:283:236,47:236:8458:47:1692:-67.3578,0,-676.025	0/1:732:500,232:500:17930:232:8284:-525.206,0,-1392.86	0/1:384:295,89:295:10544:89:3185:-171.202,0,-833.196	0/1:187:145,42:145:5208:42:1508:-79.6514,0,-412.563	0/1:256:179,77:179:6424:77:2764:-171.937,0,-501.167	0/1:386:324,61:324:11622:61:2177:-79.9381,0,-927.514	0/1:112:93,19:93:3325:19:680:-27.8138,0,-265.743	0/1:183:111,71:111:3980:71:2552:-174.783,0,-303.111	0/1:221:171,50:171:6111:50:1785:-94.4031,0,-483.067	0/1:75:62,13:62:2232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chr02	24105483	.	A	G	171219	PASS	AB=0.41711;ABP=1563.56;AC=93;AF=0.494681;AN=188;AO=10907;CIGAR=1X;DP=26155;DPB=26155;DPRA=46.862;EPP=23565.8;EPPR=32935.8;GTI=1;LEN=1;MEANALT=1.06452;MQM=59.9123;MQMR=59.9099;NS=94;NUMALT=1;ODDS=69.55;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=388766;QR=542954;RO=15242;RPL=14;RPP=23565.8;RPPR=32953.1;RPR=10893;RUN=1;SAF=10907;SAP=23687.3;SAR=0;SRF=15240;SRP=33083.2;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:107:56,51:56:1996:51:1757:-126.193,0,-147.704	0/1:479:228,251:228:8126:251:8964:-662.544,0,-587.162	0/1:313:218,95:218:7757:95:3416:-212.068,0,-603.913	0/1:667:350,316:350:12485:316:11279:-814.147,0,-922.576	0/1:138:91,47:91:3241:47:1654:-107.6,0,-250.369	0/1:133:92,41:92:3262:41:1430:-88.9547,0,-253.762	0/1:500:352,148:352:12450:148:5293:-325.972,0,-969.14	0/1:312:190,122:190:6781:122:4346:-297.39,0,-516.429	0/1:298:172,126:172:6086:126:4490:-314.556,0,-458.134	0/1:355:179,176:179:6327:176:6240:-454.829,0,-462.621	0/1:152:93,59:93:3332:59:2116:-144.952,0,-254.337	0/1:168:113,55:113:4029:55:1977:-127.632,0,-312.222	0/1:229:107,122:107:3832:122:4384:-325.786,0,-275.712	0/1:123:80,43:80:2864:43:1540:-101.866,0,-220.971	0/1:194:127,67:127:4544:67:2398:-157.675,0,-350.682	0/1:142:88,54:88:3164:54:1944:-132.49,0,-242.22	0/1:184:98,85:98:3494:85:3050:-219.28,0,-259.22	0/1:209:89,120:89:3177:120:4300:-324.261,0,-223.231	0/1:148:86,62:86:3088:62:2213:-154.881,0,-233.595	0/1:656:456,199:456:16250:199:7088:-440.592,0,-1264.76	0/1:506:274,231:274:9742:231:8221:-587.024,0,-723.937	0/1:539:261,278:261:9245:278:9851:-724.149,0,-669.753	0/1:289:187,102:187:6669:102:3606:-237.749,0,-513.242	0/1:416:221,195:221:7866:195:6980:-502.386,0,-582.419	0/1:234:117,117:117:4189:117:4182:-306.109,0,-306.747	0/1:1194:578,616:578:20673:616:21896:-1610.28,0,-1500.58	0/1:403:215,188:215:7643:188:6688:-479.885,0,-566.587	0/1:134:67,67:67:2363:67:2400:-175.883,0,-172.586	0/1:558:355,203:355:12669:203:7212:-481.133,0,-972.06	0/1:251:174,77:174:6171:77:2734:-170.742,0,-479.92	0/1:274:189,85:189:6714:85:3052:-192.427,0,-521.856	0/1:19:15,4:15:521:4:144:-7.59405,0,-41.4968	0/1:46:22,24:22:753:24:863:-64.1451,0,-54.2377	0/1:7:3,4:3:104:4:140:-10.8374,0,-7.5956	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/1:543:354,189:354:12700:189:6748:-443.933,0,-979.294	0/1:585:408,177:408:14501:177:6311:-391.839,0,-1128.32	0/1:225:110,115:110:3929:115:4132:-304.33,0,-286.066	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:387:212,175:212:7530:175:6225:-443.476,0,-561.247	0/1:152:75,77:75:2696:77:2764:-203.236,0,-197.127	0/1:382:255,127:255:9136:127:4522:-292.023,0,-707.214	0/1:180:117,63:117:4184:63:2252:-148.758,0,-322.557	0/1:181:117,64:117:4185:64:2292:-152.055,0,-322.344	0/1:407:211,196:211:7503:196:7012:-508.598,0,-552.793	0/1:248:164,84:164:5860:84:2975:-193.324,0,-452.588	0/1:429:289,140:289:10302:140:4938:-315.414,0,-797.929	0/1:323:188,135:188:6687:135:4799:-334.832,0,-504.321	0/1:363:169,193:169:5961:193:6924:-514.04,0,-427.413	0/1:582:385,197:385:13692:197:7014:-456.121,0,-1056.8	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:550:255,295:255:9068:295:10532:-782.225,0,-650.497	0/1:98:56,42:56:1996:42:1508:-106.384,0,-150.413	0/1:24:14,10:14:504:10:341:-23.793,0,-38.4734	0/1:380:239,141:239:8510:141:5038:-339.164,0,-651.31	0/1:189:95,94:95:3388:94:3372:-246.799,0,-247.971	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/1:44:29,15:29:1044:15:540:-35.6866,0,-81.0295	0/1:200:111,89:111:3948:89:3155:-223.966,0,-295.306	0/1:341:152,189:152:5417:189:6761:-505.906,0,-385.01	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:474:237,236:237:8446:236:8444:-617.174,0,-617.338	0/1:547:386,161:386:13736:161:5727:-350.882,0,-1071.26	0/1:193:114,79:114:4080:79:2828:-196.66,0,-309.283	0/1:274:137,137:137:4842:137:4860:-355.069,0,-353.439	0/1:461:316,145:316:11216:145:5130:-323.068,0,-870.552	0/1:290:216,74:216:7729:74:2640:-150.547,0,-608.302	0/1:47:32,15:32:1144:15:540:-34.7881,0,-89.1211	0/1:173:130,43:130:4588:43:1544:-87.1749,0,-360.996	0/1:206:135,71:135:4860:71:2546:-167.378,0,-375.537	0/1:52:29,23:29:1036:23:828:-59.1906,0,-77.9004	0/1:390:195,195:195:6931:195:6925:-505.903,0,-506.438	0/1:158:94,64:94:3345:64:2281:-157.987,0,-253.668	0/1:454:224,230:224:7975:230:8211:-602.325,0,-580.959	0/1:577:252,325:252:8990:325:11603:-870.442,0,-635.35	0/1:217:146,71:146:5209:71:2529:-162.53,0,-403.624	0/1:214:150,64:150:5314:64:2288:-141.754,0,-413.946	0/1:29:13,16:13:468:16:576:-43.4436,0,-33.5385	0/1:414:216,198:216:7651:198:7053:-510.197,0,-563.988	0/1:279:186,93:186:6614:93:3332:-216.11,0,-510.978	0/1:724:510,214:510:18173:214:7582:-464.453,0,-1417.21	0/1:379:184,195:184:6604:195:6945:-510.969,0,-480.263	0/1:185:88,97:88:3133:97:3431:-253.311,0,-226.345	0/1:255:128,127:128:4566:127:4511:-329.378,0,-334.341	0/1:384:248,136:248:8842:136:4846:-318.63,0,-680.11	0/1:112:71,41:71:2537:41:1468:-98.6926,0,-194.864	0/1:181:118,63:118:4216:63:2249:-148.185,0,-325.134	0/1:219:108,111:108:3833:111:3953:-290.011,0,-279.24	0/1:75:47,28:47:1688:28:1008:-68.4591,0,-129.63	0/1:201:145,56:145:5192:56:1978:-117.784,0,-406.723	0/1:147:115,32:115:4105:32:1148:-59.3784,0,-325.383	0/1:279:135,144:135:4767:144:5119:-376.856,0,-345.185	0/1:317:152,165:152:5452:165:5888:-434.597,0,-395.022
chr02	24105485	.	C	A	88740.8	PASS	AB=0.286014;ABP=10425.4;AC=92;AF=0.489362;AN=188;AO=7497;CIGAR=1X;DP=26229;DPB=26229;DPRA=0;EPP=16195.8;EPPR=40388.5;GTI=13;LEN=1;MEANALT=1.06383;MQM=59.8869;MQMR=59.9228;NS=94;NUMALT=1;ODDS=0.188145;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268637;QR=670280;RO=18726;RPL=10;RPP=16195.8;RPPR=40440.5;RPR=7487;RUN=1;SAF=7497;SAP=16282.5;SAR=0;SRF=18720;SRP=40613.9;SRR=6;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:108:79,29:79:2801:29:1044:-61.7636,0,-219.801	0/1:479:367,112:367:13138:112:4003:-216.236,0,-1038.03	0/1:308:212,96:212:7608:96:3416:-214.93,0,-591.005	0/1:672:507,165:507:18139:165:5913:-329.983,0,-1429.77	0/1:139:81,58:81:2884:58:2076:-145.267,0,-217.95	0/1:131:86,45:86:3084:45:1605:-105.303,0,-238.353	0/1:497:316,181:316:11320:181:6479:-432.826,0,-869.025	0/1:312:226,86:226:8094:86:3084:-183.866,0,-634.532	0/1:304:219,85:219:7851:85:3030:-181.408,0,-615.1	0/1:360:257,103:257:9177:103:3677:-222.726,0,-717.529	0/1:151:85,66:85:3048:66:2370:-168.101,0,-229.094	0/1:168:110,58:110:3944:58:2084:-137.254,0,-304.578	0/1:230:170,60:170:6096:60:2148:-124.302,0,-479.494	0/1:125:85,39:85:3052:39:1400:-88.6117,0,-237.221	0/1:197:127,70:127:4552:70:2505:-166.353,0,-350.523	0/1:142:99,43:99:3551:43:1533:-95.4972,0,-277.051	0/1:186:142,44:142:5087:44:1584:-86.8599,0,-401.981	0/1:208:169,39:169:6064:39:1400:-63.6788,0,-483.247	0/1:148:102,46:102:3660:46:1656:-104.776,0,-285.051	0/1:661:415,246:415:14857:246:8852:-597.648,0,-1137.88	0/1:504:378,126:378:13552:126:4510:-254.043,0,-1067.42	0/1:541:393,148:393:14061:148:5292:-313.535,0,-1102.27	0/1:292:206,86:206:7381:86:3088:-190.202,0,-576.429	0/1:416:314,102:314:11254:102:3649:-203.381,0,-886.863	0/1:237:166,71:166:5899:71:2548:-158.226,0,-459.668	0/1:1191:899,292:899:32219:292:10477:-584.29,0,-2539.78	0/1:405:295,110:295:10561:110:3960:-234.666,0,-828.466	0/1:137:100,37:100:3588:37:1317:-77.5887,0,-281.849	0/1:555:405,150:405:14473:150:5388:-317.975,0,-1135.21	0/1:254:154,100:154:5499:100:3592:-247.016,0,-418.573	0/1:277:189,88:189:6768:88:3134:-198.898,0,-525.805	0/1:19:14,5:14:496:5:180:-10.8325,0,-39.2547	0/1:47:34,13:34:1215:13:468:-28.3112,0,-95.5073	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5027	0/1:543:375,168:375:13456:168:6048:-380.96,0,-1047.31	0/1:582:386,196:386:13810:196:7041:-458.521,0,-1066.99	0/1:224:173,51:173:6185:51:1821:-96.7303,0,-489.316	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:391:265,126:265:9481:126:4536:-290.701,0,-734.901	0/1:155:118,37:118:4228:37:1332:-73.5227,0,-334.032	0/1:380:262,118:262:9400:118:4229:-266.391,0,-731.56	0/1:182:140,42:140:5024:42:1508:-81.2271,0,-397.518	0/1:180:135,45:135:4827:45:1605:-90.5527,0,-380.399	0/1:411:294,117:294:10486:117:4183:-252.916,0,-819.767	0/1:248:175,73:175:6267:73:2605:-160.041,0,-489.195	0/1:430:311,119:311:11093:119:4265:-254.583,0,-868.728	0/1:323:237,86:237:8433:86:3082:-180.236,0,-661.715	0/1:363:298,65:298:10647:65:2336:-101.225,0,-848.861	0/1:584:382,201:382:13633:201:7189:-471.183,0,-1050.9	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:553:440,113:440:15756:113:4044:-197.662,0,-1251.24	0/1:99:54,45:54:1918:45:1616:-115.928,0,-142.964	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5887	0/1:383:276,107:276:9878:107:3844:-230.671,0,-773.633	0/1:187:148,39:148:5291:39:1381:-68.2641,0,-420.033	0/0:12:11,1:11:392:1:36:0,-0.0140849,-32.0218	0/1:44:34,10:34:1220:10:356:-19.1359,0,-96.8569	0/1:200:129,71:129:4623:71:2556:-170.081,0,-356.026	0/1:344:272,72:272:9749:72:2588:-129.614,0,-773.795	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:477:371,106:371:13302:106:3812:-199.624,0,-1053.34	0/1:544:349,195:349:12466:195:6971:-463.679,0,-957.974	0/1:193:140,53:140:5007:53:1908:-113.899,0,-392.676	0/1:276:191,84:191:6821:84:3005:-187.623,0,-530.894	0/1:460:312,148:312:11141:148:5285:-337.308,0,-863.909	0/1:291:186,105:186:6680:105:3770:-251.862,0,-513.666	0/1:49:32,17:32:1144:17:608:-40.3016,0,-88.5109	0/1:172:110,62:110:3921:62:2211:-147.471,0,-301.305	0/1:208:131,77:131:4694:77:2768:-186.746,0,-360.003	0/1:53:35,18:35:1252:18:640:-41.9747,0,-97.0129	0/1:388:295,93:295:10552:93:3330:-183.116,0,-832.772	0/1:157:97,60:97:3476:60:2150:-146.498,0,-265.781	0/1:459:373,86:373:13367:86:3073:-138.624,0,-1064.48	0/1:581:470,110:470:16833:110:3944:-180.155,0,-1339.66	0/1:217:138,78:138:4932:78:2789:-185.866,0,-378.07	0/1:214:135,79:135:4810:79:2840:-191.383,0,-368.616	0/1:27:23,4:23:824:4:144:-4.99093,0,-66.354	0/1:413:308,105:308:11045:105:3746:-213.012,0,-869.612	0/1:280:185,95:185:6632:95:3385:-220.575,0,-512.645	0/1:731:447,284:447:15968:284:10186:-696.59,0,-1216.73	0/1:382:288,94:288:10344:94:3350:-186.71,0,-815.784	0/1:185:139,46:139:5000:46:1637:-91.9238,0,-394.384	0/1:255:205,49:205:7340:49:1764:-82.2223,0,-583.811	0/1:381:266,115:266:9522:115:4117:-256.016,0,-740.52	0/1:112:82,30:82:2948:30:1072:-63.0771,0,-231.829	0/1:184:138,46:138:4940:46:1652:-93.5781,0,-389.361	0/1:221:161,60:161:5792:60:2144:-126.672,0,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chr02	24105492	.	A	G	29846.7	PASS	AB=0.185943;ABP=23491.3;AC=83;AF=0.441489;AN=188;AO=5299;CIGAR=1X;DP=29817;DPB=29817;DPRA=33.935;EPP=11509.6;EPPR=52324.1;GTI=41;LEN=1;MEANALT=1.1;MQM=59.8434;MQMR=59.9208;NS=94;NUMALT=1;ODDS=0.35787;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189455;QR=865876;RO=24509;RPL=0;RPP=11509.6;RPPR=52375.8;RPR=5299;RUN=1;SAF=5299;SAP=11509.6;SAR=0;SRF=24503;SRP=53171.5;SRR=6;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:137:102,34:102:3613:34:1205:-67.4499,0,-284.071	0/1:528:440,88:440:15503:88:3140:-123.745,0,-1236.05	0/1:324:284,40:284:9979:40:1425:-30.932,0,-800.26	0/1:786:636,150:636:22533:150:5346:-244.662,0,-1790.73	0/1:154:131,23:131:4626:23:828:-28.4855,0,-370.148	0/1:162:131,31:131:4589:31:1112:-51.6236,0,-364.41	0/1:529:466,63:466:16547:63:2260:-44.4178,0,-1329.06	0/1:331:292,39:292:10320:39:1385:-25.2972,0,-829.073	0/1:383:291,92:291:10313:92:3308:-182.625,0,-812.795	0/1:418:343,75:343:12118:75:2665:-114.26,0,-964.609	0/1:159:143,16:143:5062:16:561:-2.95336,0,-407.861	0/1:192:162,30:162:5780:30:1076:-39.3484,0,-462.516	0/1:287:218,69:218:7761:69:2476:-136.682,0,-611.898	0/1:137:121,16:121:4336:16:557:-9.2111,0,-349.174	0/1:215:182,33:182:6500:33:1188:-42.5071,0,-520.345	0/1:166:135,31:135:4797:31:1108:-50.06,0,-381.91	0/1:226:178,48:178:6326:48:1716:-86.4711,0,-501.401	0/1:251:190,61:190:6734:61:2190:-121.794,0,-530.575	0/1:185:142,43:142:5063:43:1548:-83.9016,0,-400.126	0/0:670:606,62:606:21260:62:2232:0,-0.305832,-1711.73	0/1:592:454,138:454:16021:138:4937:-266.188,0,-1262.27	0/1:620:501,119:501:17697:119:4268:-197.641,0,-1405.58	0/1:313:269,44:269:9379:44:1565:-46.8815,0,-749.868	0/1:505:395,110:395:13923:110:3910:-200.07,0,-1100.2	0/1:255:217,38:217:7690:38:1345:-44.432,0,-615.365	0/1:1322:1106,215:1106:38641:215:7666:-291.955,0,-3077.77	0/1:503:374,129:374:13167:129:4606:-263.279,0,-1032.92	0/1:162:125,37:125:4460:37:1317:-70.0599,0,-352.769	0/1:626:518,108:518:18232:108:3853:-158.519,0,-1452.05	0/1:267:227,40:227:7960:40:1440:-49.5188,0,-636.053	0/1:288:257,31:257:9027:31:1108:-13.3344,0,-725.724	0/0:19:18,1:18:640:1:36:0,-2.12129,-54.331	0/1:47:41,6:41:1415:6:212:-5.27639,0,-113.491	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/0:13:12,1:12:428:1:36:0,-0.318822,-35.2642	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:620:508,112:508:18047:112:4013:-174.715,0,-1437.15	0/0:598:544,54:544:19195:54:1944:0,-4.79546,-1551.32	0/1:269:213,56:213:7613:56:2001:-99.3813,0,-604.229	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:453:368,85:368:13005:85:3026:-136.2,0,-1033.28	0/1:196:145,51:145:5142:51:1832:-106.149,0,-403.914	0/1:406:356,50:356:12602:50:1785:-38.711,0,-1011.67	0/1:204:168,36:168:5978:36:1277:-53.821,0,-476.717	0/1:210:175,35:175:6249:35:1245:-49.1364,0,-499.289	0/1:483:384,97:384:13530:97:3492:-169.354,0,-1072.36	0/1:283:236,47:236:8257:47:1684:-66.6238,0,-657.939	0/1:440:398,42:398:14065:42:1504:-3.20139,0,-1133.17	0/1:341:292,49:292:10358:49:1760:-56.0326,0,-829.164	0/1:444:338,106:338:11959:106:3789:-207.55,0,-942.512	0/1:637:550,87:550:19387:87:3082:-85.8506,0,-1552.57	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:610:516,93:516:18187:93:3344:-117.613,0,-1452.87	0/1:113:94,19:94:3326:19:684:-27.8739,0,-265.411	0/1:22:19,3:19:676:3:108:-3.45251,0,-54.5453	0/1:408:362,46:362:12801:46:1607:-21.9611,0,-1028.88	0/1:222:177,45:177:6215:45:1612:-78.5414,0,-492.123	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/1:59:43,16:43:1517:16:576:-34.4142,0,-119.056	0/1:208:183,25:183:6434:25:900:-18.7052,0,-516.535	0/1:451:325,126:325:11578:126:4520:-271.196,0,-906.127	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:641:451,190:451:15867:190:6809:-419.918,0,-1234.75	0/0:554:504,50:504:17787:50:1781:0,-6.19977,-1439.79	0/1:209:181,28:181:6378:28:1004:-27.7606,0,-511.2	0/1:316:261,55:261:9238:55:1976:-82.9876,0,-736.131	0/1:505:421,84:421:14914:84:3003:-118.437,0,-1189.79	0/0:286:268,18:268:9410:18:648:0,-27.4442,-788.212	0/1:57:47,10:47:1664:10:356:-15.221,0,-132.881	0/1:201:163,38:163:5774:38:1360:-62.1835,0,-459.261	0/1:232:197,35:197:6956:35:1245:-42.5135,0,-556.271	0/1:70:53,17:53:1857:17:612:-34.3413,0,-146.318	0/1:441:357,84:357:12576:84:2978:-135.447,0,-998.93	0/1:184:144,40:144:5061:40:1428:-73.4047,0,-400.238	0/1:501:425,76:425:15055:76:2712:-93.5036,0,-1203.77	0/1:706:526,180:526:18616:180:6461:-368.985,0,-1462.51	0/0:221:206,15:206:7281:15:540:0,-17.5944,-605.852	0/1:246:205,41:205:7168:41:1472:-58.7194,0,-571.079	0/1:26:23,3:23:794:3:108:-2.24839,0,-63.9465	0/1:470:387,83:387:13696:83:2969:-125.957,0,-1090.93	0/1:306:261,45:261:9168:45:1616:-53.6148,0,-732.953	0/1:809:693,116:693:24494:116:4126:-126.438,0,-1960.22	0/1:478:357,120:357:12670:120:4312:-244.297,0,-996.038	0/1:229:177,52:177:6297:52:1856:-98.3839,0,-497.818	0/1:317:243,74:243:8646:74:2660:-144.217,0,-682.697	0/1:439:363,76:363:12957:76:2717:-112.618,0,-1031.72	0/1:127:101,26:101:3601:26:936:-46.322,0,-286.057	0/1:215:179,36:179:6373:36:1288:-51.496,0,-508.94	0/1:292:212,80:212:7577:80:2857:-169.462,0,-594.068	0/1:76:68,8:68:2412:8:288:-3.38913,0,-194.459	0/1:214:189,25:189:6719:25:885:-15.5461,0,-540.176	0/1:150:127,23:127:4434:23:813:-28.3346,0,-354.078	0/1:395:263,132:263:9212:132:4732:-307.11,0,-710.137	0/1:401:304,96:304:10814:96:3425:-187.68,0,-852.108
chr02	24105588	.	G	T	37300.6	PASS	AB=0.190374;ABP=24934.8;AC=87;AF=0.462766;AN=188;AO=5825;CIGAR=1X;DP=32090;DPB=32090;DPRA=86.2527;EPP=12634.5;EPPR=56943.4;GTI=43;LEN=1;MEANALT=1.15054;MQM=59.9519;MQMR=59.9617;NS=94;NUMALT=1;ODDS=2.34518;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208471;QR=930553;RO=26250;RPL=1;RPP=12643.2;RPPR=56934.7;RPR=5824;RUN=1;SAF=1;SAP=12643.2;SAR=5824;SRF=3;SRP=56978.1;SRR=26247;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:39,15:39:1379:15:536:-32.3192,0,-108.152	0/1:528:354,174:354:12538:174:6246:-403.276,0,-969.316	0/1:391:315,76:315:11083:76:2706:-126.081,0,-879.613	0/1:1016:796,220:796:28270:220:7881:-403.464,0,-2237.61	0/1:171:152,19:152:5400:19:684:-10.4142,0,-434.642	0/1:158:140,18:140:4985:18:648:-11.0891,0,-401.131	0/1:593:524,69:524:18671:69:2480:-44.9244,0,-1501.45	0/1:328:262,66:262:9278:66:2376:-115.359,0,-736.255	0/1:292:246,46:246:8793:46:1656:-61.4277,0,-703.398	0/1:248:205,43:205:7288:43:1525:-62.8822,0,-581.32	0/1:212:159,53:159:5657:53:1893:-106.829,0,-445.434	0/1:200:170,30:170:6027:30:1068:-36.2255,0,-482.333	0/1:305:246,59:246:8681:59:2120:-99.2543,0,-689.477	0/1:169:136,33:136:4766:33:1169:-54.6408,0,-378.214	0/1:186:149,37:149:5283:37:1328:-63.8307,0,-419.615	0/1:116:96,20:96:3392:20:720:-30.2093,0,-270.577	0/1:260:202,58:202:7129:58:2068:-108.123,0,-563.407	0/1:237:179,58:179:6323:58:2084:-116.486,0,-497.82	0/1:164:127,37:127:4468:37:1318:-69.552,0,-352.924	0/1:776:676,100:676:23982:100:3550:-86.1065,0,-1924.15	0/1:647:516,130:516:18176:130:4656:-224.377,0,-1440.63	0/1:557:489,68:489:17345:68:2432:-51.4619,0,-1392.94	0/0:337:325,12:325:11601:12:432:0,-62.2268,-1004.26	0/1:493:412,81:412:14623:81:2907:-113.457,0,-1167.41	0/1:338:297,41:297:10519:41:1468:-30.668,0,-844.886	0/1:1302:1096,206:1096:39036:206:7370:-271.385,0,-3119.71	0/1:558:381,177:381:13457:177:6348:-403.435,0,-1042.96	0/1:171:122,49:122:4301:49:1751:-106.397,0,-335.793	0/1:784:646,137:646:22916:137:4909:-205.893,0,-1824.69	0/1:404:296,108:296:10508:108:3864:-226.333,0,-824.021	0/1:429:386,43:386:13664:43:1548:-10.4712,0,-1100.41	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:27:19,8:19:684:8:288:-18.1396,0,-53.7625	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:553:463,90:463:16418:90:3229:-124.361,0,-1310.71	0/1:642:573,67:573:20275:67:2378:-21.2524,0,-1631.19	0/1:254:184,70:184:6450:70:2505:-149.234,0,-504.134	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:806:625,180:625:22255:180:6456:-338.435,0,-1759.68	0/1:133:94,39:94:3335:39:1392:-85.542,0,-260.33	0/1:356:322,34:322:11330:34:1224:-3.30037,0,-912.428	0/1:219:189,30:189:6660:30:1071:-30.7714,0,-533.556	0/1:215:190,25:190:6587:25:892:-15.8767,0,-528.173	0/0:395:374,21:374:13270:21:752:0,-50.9006,-1126.09	0/1:330:289,41:289:10259:41:1468:-33.0762,0,-823.892	0/1:629:546,82:546:19304:82:2931:-73.5979,0,-1547.52	0/1:325:279,46:279:9881:46:1656:-51.4921,0,-791.406	0/1:524:396,128:396:14049:128:4596:-256.061,0,-1106.45	0/1:621:522,99:522:18524:99:3560:-133.667,0,-1479.81	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:749:574,174:574:20358:174:6229:-335.174,0,-1606.2	0/1:230:203,27:203:7227:27:972:-18.561,0,-581.132	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/1:425:353,72:353:12537:72:2573:-103.81,0,-999.583	0/0:199:183,15:183:6532:15:497:0,-15.1512,-543.299	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:228:198,30:198:7044:30:1080:-28.8784,0,-565.39	0/1:461:338,123:338:11919:123:4401:-257.486,0,-933.798	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:981:769,211:769:27313:211:7527:-382.098,0,-2162.03	0/1:580:468,112:468:16621:112:4015:-186.94,0,-1320.96	0/1:172:135,37:135:4788:37:1328:-68.0451,0,-379.295	0/1:423:337,86:337:11903:86:3046:-147.028,0,-943.75	0/0:573:535,38:535:18977:38:1360:0,-49.7987,-1584.01	0/0:398:367,30:367:13005:30:1056:0,-24.5204,-1074.74	0/1:45:29,16:29:1019:16:572:-38.2671,0,-78.3675	0/0:243:234,9:234:8352:9:316:0,-44.372,-722.909	0/1:216:166,49:166:5870:49:1764:-94.0016,0,-462.748	0/1:50:40,10:40:1428:10:356:-17.3111,0,-113.721	0/1:447:345,102:345:12241:102:3653:-194.412,0,-966.982	0/1:197:161,36:161:5708:36:1288:-56.9207,0,-454.531	0/1:643:526,117:526:18727:117:4196:-184.258,0,-1491.41	0/1:781:544,236:544:19291:236:8458:-526.054,0,-1500.58	0/1:291:248,43:248:8823:43:1544:-51.6533,0,-705.969	0/1:237:177,60:177:6292:60:2152:-122.595,0,-495.004	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:509:415,94:415:14751:94:3384:-151.55,0,-1174	0/1:319:287,32:287:10225:32:1129:-5.88778,0,-824.152	0/1:785:693,92:693:24628:92:3308:-61.6244,0,-1979.55	0/1:431:330,101:330:11683:101:3624:-196.621,0,-921.604	0/1:249:185,64:185:6514:64:2284:-130.866,0,-511.392	0/1:335:245,90:245:8675:90:3228:-189.893,0,-679.906	0/1:381:310,71:310:10944:71:2531:-113.349,0,-870.168	0/1:143:124,19:124:4404:19:676:-18.1207,0,-353.486	0/1:228:188,40:188:6634:40:1436:-60.9028,0,-528.51	0/1:285:232,53:232:8171:53:1884:-84.0434,0,-649.61	0/1:78:63,15:63:2192:15:540:-25.456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chr02	24105610	.	C	G	72750.9	PASS	AB=0.239347;ABP=19211.9;AC=91;AF=0.484043;AN=188;AO=7791;CIGAR=1X;DP=32568;DPB=32568;DPRA=63.1241;EPP=16756.3;EPPR=52996.2;GTI=22;LEN=1;MEANALT=1.21978;MQM=59.9116;MQMR=59.9838;NS=94;NUMALT=1;ODDS=0.123913;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278171;QR=885211;RO=24755;RPL=7773;RPP=16765;RPPR=53004.8;RPR=18;RUN=1;SAF=1;SAP=16912.3;SAR=7790;SRF=1;SRP=53749.1;SRR=24754;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:41,13:41:1476:13:464:-25.8419,0,-116.881	0/1:537:423,114:423:15101:114:4084:-206.093,0,-1197.15	0/1:393:282,111:282:10115:111:3964:-238.589,0,-791.974	0/1:1028:814,213:814:29106:213:7625:-376.732,0,-2309.16	0/1:174:137,37:137:4908:37:1328:-67.4384,0,-389.492	0/1:162:114,48:114:4069:48:1707:-105.129,0,-317.628	0/1:605:433,172:433:15504:172:6143:-370.751,0,-1212.93	0/1:340:244,96:244:8713:96:3440:-207.463,0,-681.812	0/1:301:242,59:242:8633:59:2099:-98.5494,0,-686.354	0/1:249:198,51:198:7077:51:1828:-89.8445,0,-562.031	0/1:214:172,42:172:6167:42:1508:-71.5942,0,-490.704	0/1:202:152,50:152:5448:50:1779:-99.5841,0,-429.64	0/1:311:250,60:250:8960:60:2152:-100.268,0,-712.7	0/1:170:128,41:128:4553:41:1472:-81.5423,0,-358.703	0/1:182:126,55:126:4519:55:1958:-121.648,0,-352.03	0/1:121:86,35:86:3071:35:1256:-76.9207,0,-240.194	0/1:262:215,47:215:7691:47:1684:-72.9772,0,-613.353	0/1:238:192,46:192:6884:46:1647:-76.8727,0,-547.98	0/1:165:129,36:129:4620:36:1283:-66.1027,0,-366.293	0/1:795:571,223:571:20474:223:7923:-473.719,0,-1602.77	0/1:664:544,120:544:19433:120:4277:-185.224,0,-1548.63	0/1:567:473,94:473:16904:94:3343:-130.404,0,-1350.32	0/1:348:239,109:239:8546:109:3900:-246.332,0,-664.377	0/1:494:381,111:381:13590:111:3960:-208.124,0,-1074.42	0/1:346:266,80:266:9457:80:2859:-153.391,0,-746.936	0/1:1324:1039,285:1039:37189:285:10174:-517.029,0,-2946.86	0/1:568:473,95:473:16926:95:3406:-135.763,0,-1352	0/1:169:139,30:139:4973:30:1080:-46.6392,0,-396.843	0/1:803:592,211:592:21174:211:7529:-434.475,0,-1663.39	0/1:407:311,96:311:11140:96:3432:-186.567,0,-879.966	0/1:433:286,147:286:10187:147:5209:-338.605,0,-786.412	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:28:23,5:23:824:5:180:-8.12322,0,-66.0545	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:554:423,131:423:15197:131:4644:-251.344,0,-1200.67	0/1:670:439,230:439:15635:230:8217:-537.782,0,-1205.07	0/1:254:193,60:193:6920:60:2156:-117.787,0,-546.34	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:817:659,156:659:23581:156:5508:-250.134,0,-1875.95	0/1:137:110,26:110:3936:26:936:-43.2596,0,-313.133	0/1:371:280,91:280:10001:91:3244:-180.497,0,-788.347	0/1:223:152,71:152:5452:71:2552:-162.8,0,-423.673	0/1:216:141,75:141:5048:75:2661:-174.694,0,-389.442	0/1:396:284,112:284:10122:112:4014:-242.236,0,-791.706	0/1:338:234,103:234:8392:103:3673:-228.954,0,-653.476	0/1:644:502,142:502:17956:142:5069:-262.491,0,-1421.77	0/1:331:244,87:244:8742:87:3116:-181.026,0,-687.126	0/1:533:446,87:446:15945:87:3084:-117.338,0,-1274.28	0/1:630:442,188:442:15755:188:6726:-415.763,0,-1228	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:760:610,150:610:21814:150:5375:-255.096,0,-1733.91	0/1:235:192,43:192:6872:43:1536:-67.791,0,-547.802	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:436:340,96:340:12165:96:3427:-177.106,0,-963.376	0/1:201:161,40:161:5756:40:1409:-66.598,0,-456.713	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:227:164,62:164:5864:62:2205:-130.321,0,-459.477	0/1:457:383,74:383:13722:74:2640:-100.273,0,-1097.19	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:997:776,221:776:27735:221:7891:-410.09,0,-2195.2	0/1:580:429,151:429:15341:151:5407:-312.162,0,-1205.8	0/1:174:122,51:122:4372:51:1828:-112.51,0,-341.364	0/1:416:335,80:335:11979:80:2864:-132.75,0,-952.718	0/1:580:393,187:393:13960:187:6654:-423.827,0,-1081.57	0/1:411:251,160:251:8945:160:5719:-391.076,0,-681.18	0/1:43:36,7:36:1296:7:252:-10.0847,0,-104	0/1:247:192,55:192:6876:55:1953:-101.689,0,-544.553	0/1:221:172,49:172:6180:49:1726:-88.6662,0,-489.767	0/1:51:37,14:37:1317:14:491:-29.1234,0,-103.477	0/1:455:362,93:362:12908:93:3306:-160.791,0,-1024.57	0/1:205:155,50:155:5543:50:1792:-99.8432,0,-437.284	0/1:648:530,118:530:18876:118:4213:-184.26,0,-1503.28	0/1:800:649,151:649:23233:151:5412:-246.379,0,-1849.51	0/1:296:177,117:177:6327:117:4188:-287.741,0,-480.66	0/1:240:170,70:170:6042:70:2508:-153.713,0,-471.635	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:517:393,124:393:14078:124:4426:-242.868,0,-1111.15	0/1:328:213,115:213:7625:115:4106:-270.988,0,-587.545	0/1:793:567,225:567:20246:225:8055:-486.091,0,-1582.87	0/1:436:351,85:351:12595:85:3052:-143.66,0,-1002.12	0/1:243:198,44:198:7116:44:1576:-68.9202,0,-567.286	0/1:334:273,60:273:9757:60:2131:-91.5435,0,-777.559	0/1:381:286,95:286:10232:95:3406:-192.027,0,-806.113	0/1:141:102,38:102:3656:38:1364:-80.5567,0,-286.74	0/1:234:172,62:172:6139:62:2222:-129.803,0,-482.17	0/1:282:228,54:228:8158:54:1926:-88.7249,0,-649.321	0/1:81:61,20:61:2192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chr02	24105616	.	G	T	34291.4	PASS	AB=0.187763;ABP=25358;AC=86;AF=0.457447;AN=188;AO=5781;CIGAR=1X;DP=32509;DPB=32509;DPRA=69.9011;EPP=12530.2;EPPR=57955.3;GTI=43;LEN=1;MEANALT=1.13978;MQM=59.9524;MQMR=59.9667;NS=94;NUMALT=1;ODDS=1.18984;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205067;QR=952884;RO=26712;RPL=5779;RPP=12538.9;RPPR=57964;RPR=2;RUN=1;SAF=1;SAP=12547.6;SAR=5780;SRF=1;SRP=57998.7;SRR=26711;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:40,16:40:1409:16:576:-35.3173,0,-110.248	0/1:529:360,169:360:12861:169:5976:-378.703,0,-998.064	0/1:393:317,75:317:11281:75:2647:-120.109,0,-895.45	0/1:1025:809,216:809:28884:216:7664:-381.239,0,-2290.14	0/1:174:155,19:155:5528:19:669:-8.15473,0,-445.267	0/1:165:146,19:146:5214:19:684:-12.2204,0,-419.611	0/1:596:532,64:532:18989:64:2268:-24.962,0,-1529.16	0/1:332:266,66:266:9485:66:2353:-112.085,0,-753.67	0/1:299:254,45:254:9051:45:1612:-55.3621,0,-724.562	0/1:249:207,42:207:7399:42:1504:-60.6929,0,-591.001	0/1:215:162,53:162:5782:53:1896:-106.194,0,-455.774	0/1:202:172,30:172:6158:30:1065:-35.3526,0,-493.509	0/1:306:249,57:249:8881:57:2044:-92.1166,0,-707.162	0/1:172:138,34:138:4889:34:1212:-57.6088,0,-388.383	0/1:183:149,34:149:5328:34:1220:-55.0183,0,-424.566	0/1:119:100,19:100:3566:19:680:-25.7066,0,-285.325	0/1:257:201,56:201:7173:56:1975:-100.651,0,-568.262	0/1:237:178,59:178:6367:59:2097:-117.654,0,-501.771	0/1:163:129,34:129:4620:34:1224:-61.3992,0,-366.895	0/1:788:691,95:691:24647:95:3352:-64.9972,0,-1979.56	0/1:665:531,134:531:18981:134:4732:-225.853,0,-1507.67	0/1:563:496,67:496:17719:67:2336:-41.0143,0,-1424.76	0/0:347:335,12:335:11983:12:418:0,-66.5073,-1040.09	0/1:497:419,78:419:14928:78:2785:-101.277,0,-1193.64	0/1:349:307,42:307:10950:42:1500:-30.2351,0,-880.343	0/1:1333:1121,212:1121:39970:212:7443:-268.624,0,-3194.25	0/1:570:396,174:396:14115:174:6191:-385.699,0,-1098.53	0/1:167:121,46:121:4331:46:1644:-97.9766,0,-339.693	0/1:796:660,136:660:23520:136:4774:-190.196,0,-1876.53	0/1:405:299,106:299:10686:106:3761:-216.768,0,-839.728	0/1:435:391,44:391:13938:44:1553:-9.10976,0,-1123.25	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:27:19,8:19:684:8:273:-16.7724,0,-53.7625	0/1:13:8,5:8:284:5:176:-12.2716,0,-21.99	0/1:561:473,88:473:16882:88:3160:-115.746,0,-1350.11	0/1:662:591,71:591:21020:71:2484:-24.526,0,-1691.97	0/1:250:182,68:182:6497:68:2436:-144.233,0,-509.558	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:813:631,182:631:22533:182:6402:-331.535,0,-1782.63	0/1:138:99,39:99:3556:39:1404:-85.1171,0,-278.705	0/0:371:335,35:335:11946:35:1207:0,-2.81376,-966.074	0/1:222:191,31:191:6844:31:1093:-31.8444,0,-549.2	0/1:215:190,25:190:6710:25:854:-12.4473,0,-539.244	0/0:407:386,21:386:13737:21:752:0,-54.5129,-1168.1	0/1:339:294,43:294:10489:43:1506:-34.0221,0,-842.105	0/1:643:558,85:558:19864:85:3014:-77.2257,0,-1593.73	0/1:332:287,45:287:10198:45:1575:-42.0925,0,-817.815	0/1:524:395,128:395:14144:128:4531:-250.156,0,-1114.92	0/1:632:532,98:532:19011:98:3498:-125.019,0,-1520.54	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:757:585,171:585:20787:171:6067:-318.195,0,-1642.39	0/1:233:206,27:206:7355:27:957:-16.3039,0,-591.85	0/1:9:8,1:8:275:1:36:-0.889005,0,-22.3742	0/1:431:359,72:359:12810:72:2527:-97.9291,0,-1022.77	0/0:199:182,17:182:6486:17:593:0,-7.15198,-531.075	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:231:202,29:202:7222:29:1029:-23.3832,0,-580.496	0/1:462:337,125:337:12003:125:4469:-263.303,0,-941.052	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:985:775,210:775:27606:210:7414:-370.791,0,-2187.2	0/1:583:474,109:474:16951:109:3839:-170.204,0,-1349.73	0/1:171:136,35:136:4876:35:1252:-61.5089,0,-387.515	0/1:420:335,85:335:11950:85:2999:-143.706,0,-948.928	0/0:579:542,37:542:19321:37:1324:0,-54.8428,-1618.71	0/0:410:380,29:380:13501:29:1036:0,-29.8885,-1121.31	0/1:44:28,16:28:995:16:576:-38.9297,0,-76.6187	0/0:249:241,8:241:8620:8:284:0,-49.0531,-749.893	0/1:217:170,47:170:6055:47:1672:-85.4438,0,-479.73	0/1:52:42,10:42:1508:10:349:-16.0874,0,-120.316	0/1:450:350,98:350:12461:98:3508:-180.709,0,-986.107	0/1:201:164,37:164:5824:37:1332:-59.6754,0,-463.761	0/1:662:544,117:544:19377:117:4151:-174.431,0,-1544.11	0/1:799:562,237:562:20082:237:8414:-516.733,0,-1566.36	0/1:289:246,43:246:8781:43:1524:-50.4549,0,-703.279	0/1:240:180,59:180:6435:59:2112:-118.043,0,-506.932	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:518:422,96:422:15075:96:3413:-151.451,0,-1200.45	0/1:329:295,34:295:10495:34:1193:-8.63431,0,-845.434	0/1:783:689,94:689:24632:94:3372:-67.9843,0,-1980.49	0/1:437:338,99:338:12090:99:3541:-187.347,0,-956.399	0/1:249:186,63:186:6649:63:2256:-128.346,0,-523.53	0/1:335:246,89:246:8802:89:3169:-184.586,0,-691.322	0/1:381:311,70:311:11105:70:2501:-110.648,0,-884.615	0/1:142:124,18:124:4439:18:648:-15.9056,0,-356.934	0/1:232:194,38:194:6888:38:1356:-52.5015,0,-550.154	0/1:282:232,50:232:8285:50:1796:-77.0319,0,-660.747	0/1:82:67,15:67:2403:15:540:-24.2521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chr02	24125984	.	A	G	67509	PASS	AB=0.497946;ABP=3.23326;AC=50;AF=0.265957;AN=188;AO=3043;CIGAR=1X;DP=11650;DPB=11650;DPRA=1.22042;EPP=3.78741;EPPR=237.141;GTI=2;LEN=1;MEANALT=1.07018;MQM=59.9888;MQMR=59.9995;NS=94;NUMALT=1;ODDS=1.80867;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106614;QR=307323;RO=8601;RPL=0;RPP=6610.8;RPPR=18671.2;RPR=3043;RUN=1;SAF=1538;SAP=3.78741;SAR=1505;SRF=3820;SRP=236.169;SRR=4781;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:93:91,2:91:3264:2:72:0,-21.1591,-287.143	0/1:113:52,60:52:1868:60:2120:-156.992,0,-134.324	0/0:248:248,0:248:8846:0:0:0,-74.6554,-796.126	0/1:43:20,23:20:716:23:813:-60.5448,0,-51.8234	0/1:24:9,15:9:324:15:521:-39.9916,0,-22.2811	0/1:106:57,49:57:2033:49:1737:-124.703,0,-151.331	0/1:146:63,83:63:2238:83:2876:-215.125,0,-157.732	0/0:128:128,0:128:4600:0:0:0,-38.5318,-414.162	0/0:83:82,0:82:2911:0:0:0,-24.6845,-261.864	0/0:154:154,0:154:5506:0:0:0,-46.3586,-495.666	0/1:272:142,130:142:5088:130:4564:-329.05,0,-376.183	0/0:216:216,0:216:7727:0:0:0,-65.0225,-695.46	0/1:188:100,88:100:3557:88:3061:-219.125,0,-263.744	0/1:225:102,123:102:3647:123:4351:-324.038,0,-260.702	0/1:199:96,103:96:3439:103:3637:-267.63,0,-249.817	0/0:163:163,0:163:5844:0:0:0,-49.0679,-526.071	0/0:125:125,0:125:4470:0:0:0,-37.6287,-402.469	0/0:142:142,0:142:5082:0:0:0,-42.7463,-457.523	0/1:123:79,44:79:2820:44:1560:-103.665,0,-217.013	0/0:195:195,0:195:6992:0:0:0,-58.7008,-629.342	0/0:49:49,0:49:1732:0:0:0,-14.7505,-156.162	0/1:73:32,41:32:1152:41:1456:-109.361,0,-82.015	0/0:92:92,0:92:3266:0:0:0,-27.6948,-294.159	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:282:281,1:281:10037:1:36:0,-81.2922,-899.666	0/0:232:231,1:231:8249:1:36:0,-66.2407,-738.821	0/0:129:128,1:128:4579:1:36:0,-35.2346,-408.677	0/1:198:127,71:127:4547:71:2487:-164.479,0,-349.792	0/1:58:35,23:35:1243:23:811:-55.8502,0,-94.7141	0/1:139:89,50:89:3195:50:1746:-115.577,0,-245.929	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:519:284,235:284:10119:235:8190:-580.891,0,-754.409	0/1:25:11,14:11:396:14:489:-36.8131,0,-28.457	0/0:168:168,0:168:5986:0:0:0,-50.573,-538.846	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:151:151,0:151:5390:0:0:0,-45.4555,-485.232	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/1:106:52,54:52:1855:54:1919:-141.077,0,-135.32	0/1:257:148,109:148:5289:109:3811:-265.824,0,-398.78	0/1:182:78,104:78:2757:104:3629:-272.032,0,-193.582	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/1:92:44,48:44:1559:48:1686:-124.328,0,-112.906	0/1:151:84,66:84:2992:66:2261:-158.232,0,-223.996	0/1:59:25,34:25:891:34:1174:-88.1987,0,-62.748	0/0:132:132,0:132:4723:0:0:0,-39.736,-425.229	0/1:63:34,29:34:1216:29:1008:-72.0626,0,-90.7817	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:129:68,61:68:2408:61:2138:-153.852,0,-178.142	0/0:44:43,1:43:1518:1:36:0,-9.64704,-133.313	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:16:7,9:7:243:9:301:-22.5972,0,-17.391	0/1:57:20,37:20:720:37:1265:-96.987,0,-47.9701	0/0:218:218,0:218:7777:0:0:0,-65.6245,-699.96	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:152:149,3:149:5326:3:108:0,-35.6814,-469.398	0/1:90:34,56:34:1224:56:1989:-152.19,0,-83.3743	0/1:68:36,32:36:1296:32:1139:-82.3483,0,-96.4739	0/0:88:87,0:87:3115:0:0:0,-26.1896,-280.216	0/1:177:86,91:86:3080:91:3134:-229,0,-224.146	0/1:90:31,59:31:1116:59:2095:-161.727,0,-73.659	0/1:86:41,45:41:1455:45:1577:-116.33,0,-105.357	0/1:50:29,21:29:1044:21:752:-52.9548,0,-79.2233	0/1:226:111,114:111:3988:114:3920:-284.927,0,-291.126	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2702	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:86:38,48:38:1347:48:1719:-129.106,0,-95.6409	0/0:171:171,0:171:6079:0:0:0,-51.4761,-547.214	0/0:153:153,0:153:5481:0:0:0,-46.0576,-493.412	0/1:72:37,35:37:1317:35:1235:-89.7793,0,-97.1557	0/1:113:52,61:52:1847:61:2139:-158.759,0,-132.493	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:125:125,0:125:4450:0:0:0,-37.6287,-400.669	0/1:104:56,48:56:1976:48:1691:-121.166,0,-146.805	0/1:193:80,113:80:2868:113:4002:-302.274,0,-200.258	0/0:217:216,1:216:7706:1:36:0,-61.7252,-689.975	0/0:193:193,0:193:6932:0:0:0,-58.0988,-623.943	0/0:210:210,0:210:7479:0:0:0,-63.2163,-673.155	0/1:355:186,169:186:6639:169:5937:-427.58,0,-490.722	0/1:101:41,60:41:1468:60:2124:-161.022,0,-102.012	0/1:201:99,102:99:3552:102:3550:-259.203,0,-259.381	0/0:207:207,0:207:7409:0:0:0,-62.3132,-666.854	0/1:115:62,53:62:2219:53:1838:-131.077,0,-165.355	0/1:170:89,81:89:3195:81:2831:-203.855,0,-236.597	0/1:200:70,130:70:2486:130:4543:-348.837,0,-163.787	0/0:122:122,0:122:4338:0:0:0,-36.7257,-390.597	0/0:368:366,1:366:13118:1:36:0,-107.22,-1176.84
chr02	24126026	.	A	G	225585	PASS	AB=0.491899;ABP=6.52856;AC=137;AF=0.728723;AN=188;AO=8484;CIGAR=1X;DP=11636;DPB=11636;DPRA=125.108;EPP=290.595;EPPR=3.31479;GTI=1;LEN=1;MEANALT=1.07527;MQM=59.9988;MQMR=59.9892;NS=94;NUMALT=1;ODDS=0.0790042;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=301267;QR=112517;RO=3145;RPL=8481;RPP=18399.7;RPPR=6823.61;RPR=3;RUN=1;SAF=3709;SAP=293.86;SAR=4775;SRF=1582;SRP=3.25955;SRR=1563;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53:0:0:53:1874:-168.938,-15.9546,0	1/1:92:2,90:2:72:90:3227:-283.815,-20.858,0	0/1:119:65,54:65:2319:54:1912:-136.535,0,-173.147	1/1:241:1,240:1:36:240:8548:-765.724,-68.95,0	0/1:45:26,19:26:928:19:680:-47.9828,0,-70.2919	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/1:106:50,56:50:1784:56:1973:-145.934,0,-128.934	0/1:141:82,59:82:2922:59:2078:-144.846,0,-220.769	1/1:125:0,125:0:0:125:4431:-398.963,-37.6288,0	1/1:87:0,87:0:0:87:3059:-275.541,-26.1896,0	1/1:150:0,150:0:0:150:5348:-481.456,-45.1545,0	0/1:269:133,136:133:4772:136:4794:-350.643,0,-348.659	1/1:212:0,212:0:0:212:7499:-674.96,-63.8184,0	0/1:194:95,99:95:3412:99:3491:-256.002,0,-248.894	0/1:227:126,101:126:4520:101:3616:-257.312,0,-338.633	0/1:204:108,94:108:3872:94:3334:-239.111,0,-287.507	1/1:157:0,157:0:0:157:5604:-504.483,-47.2617,0	1/1:126:0,126:0:0:126:4511:-406.157,-37.9298,0	1/1:139:1,138:1:36:138:4886:-436.298,-38.2449,0	0/1:125:46,79:46:1637:79:2820:-216.411,0,-109.988	1/1:194:0,194:0:0:194:6899:-620.98,-58.3998,0	1/1:49:0,49:0:0:49:1701:-153.372,-14.7505,0	0/1:73:41,32:41:1472:32:1134:-80.3933,0,-110.801	1/1:89:0,89:0:0:89:3167:-285.254,-26.7917,0	1/1:63:0,63:0:0:63:2239:-201.773,-18.9649,0	1/1:284:0,284:0:0:284:10092:-908.221,-85.4925,0	1/1:228:0,228:0:0:228:8131:-731.81,-68.6348,0	1/1:128:0,128:0:0:128:4555:-410.119,-38.5318,0	0/1:200:74,126:74:2652:126:4483:-343.435,0,-178.72	0/1:61:26,35:26:936:35:1248:-94.262,0,-66.1966	0/1:141:49,92:49:1743:92:3260:-251.176,0,-114.708	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:528:244,284:244:8726:284:10129:-752.602,0,-626.387	0/1:28:16,12:16:572:12:432:-30.7924,0,-43.3846	1/1:162:0,162:0:0:162:5746:-517.259,-48.7669,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:152:0,152:0:0:152:5392:-485.415,-45.7566,0	1/1:95:0,95:0:0:95:3396:-305.855,-28.5979,0	0/1:106:56,50:56:2008:50:1776:-128.214,0,-149.084	0/1:254:109,145:109:3924:145:5132:-385.565,0,-276.889	0/1:177:103,74:103:3700:74:2592:-180.247,0,-279.919	1/1:61:0,61:0:0:61:2164:-195.027,-18.3628,0	0/1:99:54,45:54:1919:45:1599:-114.397,0,-143.184	0/1:152:67,85:67:2399:85:3025:-226.723,0,-170.41	0/1:57:33,24:33:1184:24:860:-60.5631,0,-89.7096	1/1:132:0,132:0:0:132:4705:-423.611,-39.736,0	0/1:64:31,33:31:1116:33:1166:-85.9797,0,-81.4858	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:94:0,93:0:0:93:3274:-294.521,-27.9958,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:5:4,1:4:129:1:36:-2.09312,0,-10.4225	0/1:128:61,67:61:2184:67:2379:-175.836,0,-158.294	1/1:44:2,42:2:68:42:1486:-127.575,-6.78761,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:17:10,7:10:356:7:248:-17.5467,0,-27.2637	0/1:56:36,20:36:1284:20:708:-47.1879,0,-99.0057	1/1:215:0,215:0:0:215:7654:-688.899,-64.7215,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:149:2,147:2:72:147:5221:-463.194,-38.0167,0	0/1:92:58,34:58:2068:34:1216:-82.0518,0,-158.696	0/1:69:38,31:38:1344:31:1096:-78.1789,0,-100.486	1/1:90:0,90:0:0:90:3190:-287.325,-27.0927,0	0/1:178:93,84:93:3283:84:2986:-215.33,0,-242.048	0/1:91:60,31:60:2152:31:1104:-72.2769,0,-166.553	0/1:87:48,39:48:1711:39:1392:-99.3894,0,-128.085	0/1:50:21,29:21:756:29:1007:-75.8885,0,-53.3157	0/1:228:117,111:117:4178:111:3941:-286.25,0,-307.197	1/1:20:0,20:0:0:20:699:-63.2325,-6.0206,0	1/1:52:0,52:0:0:52:1847:-166.509,-15.6536,0	0/1:90:53,37:53:1900:37:1315:-91.5583,0,-144.185	1/1:171:0,171:0:0:171:6090:-548.198,-51.4761,0	1/1:149:0,148:0:0:148:5280:-475.126,-44.5524,0	0/1:72:36,36:36:1292:36:1284:-94.1893,0,-94.9096	0/1:113:61,52:61:2184:52:1850:-132.762,0,-162.81	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:117:0,117:0:0:117:4184:-376.742,-35.2205,0	0/1:106:51,55:51:1832:55:1924:-141.525,0,-133.252	0/1:194:111,83:111:3967:83:2935:-205.986,0,-298.821	1/1:205:1,204:1:36:204:7208:-645.185,-58.1129,0	1/1:191:1,190:1:36:190:6765:-605.328,-53.8985,0	1/1:208:1,207:1:36:207:7365:-659.303,-59.016,0	0/1:360:171,188:171:6127:188:6658:-491.014,0,-443.238	0/1:102:59,43:59:2111:43:1532:-107.468,0,-159.553	0/1:213:112,101:112:4012:101:3568:-257.211,0,-297.146	1/1:201:1,200:1:36:200:7126:-637.803,-56.9088,0	0/1:118:56,62:56:1999:62:2207:-163.373,0,-144.662	0/1:174:84,90:84:3011:90:3170:-233.148,0,-218.841	0/1:205:136,69:136:4864:69:2430:-157.245,0,-376.203	1/1:121:0,121:0:0:121:4283:-385.65,-36.4246,0	1/1:361:0,360:0:0:360:12760:-1147.88,-108.371,0
chr02	24127214	.	CCTCT	TCTCC,TCTCT	270518	PASS	AB=0.453073,0.543625;ABP=124.679,108.162;AC=136,52;AF=0.723404,0.276596;AN=188;AO=7792,3478;CIGAR=1X3M1X,1X4M;DP=11311;DPB=11312.4;DPRA=60.8011,1.13507;EPP=16923.1,7555.39;EPPR=18.2106;GTI=2;LEN=5,1;MEANALT=1.94624,2.30357;MQM=50.2975,35.0589;MQMR=57.7143;NS=94;NUMALT=2;ODDS=1.6456;PAIRED=0,0;PAIREDR=0;PAO=7,0;PQA=212,0;PQR=0;PRO=0;QA=274215,106998;QR=238;RO=7;RPL=4116,2850;RPP=56.9627,3085.58;RPPR=10.7656;RPR=3676,628;RUN=1,1;SAF=4116,2850;SAP=56.9627,3085.58;SAR=3676,628;SRF=1;SRP=10.7656;SRR=6;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19,0:0:0:19,0:680,0:-61.5293,-5.71957,0,-61.5293,-5.71957,-61.5293	1/1:198:0,197,0:0:0:197,0:6953,0:-624.206,-59.3029,0,-624.206,-59.3029,-624.206	1/2:218:0,86,132:0:0:86,132:3048,4232:-570.082,-321.776,-295.888,-248.64,0,-208.904	1/1:262:0,262,0:0:0:262,0:9186,0:-803.55,-78.8699,0,-803.55,-78.8699,-803.55	1/2:87:0,44,43:0:0:44,43:1544,1259:-215.12,-89.4427,-76.1974,-125.984,0,-113.04	1/2:62:0,15,47:0:0:15,47:521,1446:-149.148,-106.784,-102.269,-42.6954,0,-28.547	1/2:190:0,109,80:0:0:109,80:3869,2391:-474.087,-169.412,-136.6,-304.669,0,-280.586	1/2:241:0,87,153:0:0:87,153:3061,4937:-626.386,-377.222,-351.033,-249.179,0,-203.122	1/1:115:0,115,0:0:0:115,0:4068,0:-366.303,-34.6185,0,-366.303,-34.6185,-366.303	1/1:99:0,99,0:0:0:99,0:3481,0:-304.91,-29.802,0,-304.91,-29.802,-304.91	1/1:139:0,137,1:0:0:137,1:4833,30:-421.605,-41.2411,0,-419.477,-39.1231,-419.176	1/2:156:0,45,111:0:0:45,111:1559,3581:-400.337,-273.62,-260.073,-127.052,0,-93.6374	1/1:90:0,88,0:0:0:88,0:3105,0:-279.366,-26.4906,0,-279.366,-26.4906,-279.366	1/2:118:0,56,62:0:0:56,62:1953,1796:-285.64,-126.804,-109.946,-159.142,0,-140.479	1/2:103:0,54,49:0:0:54,49:1898,1445:-251.364,-102.637,-86.3818,-149.027,0,-134.277	1/2:77:0,47,30:0:0:47,30:1647,873:-195.568,-61.9507,-47.8023,-133.913,0,-124.882	1/1:82:0,82,0:0:0:82,0:2872,0:-258.694,-24.6845,0,-258.694,-24.6845,-258.694	1/1:83:0,82,0:0:0:82,0:2892,0:-260.034,-24.6845,0,-260.034,-24.6845,-260.034	1/1:65:0,65,0:0:0:65,0:2303,0:-207.412,-19.567,0,-207.412,-19.567,-207.412	1/2:256:3,162,91:3:103:162,91:5722,2726:-636.326,-185.115,-144.713,-443.705,0,-424.674	1/1:169:0,169,0:0:0:169,0:5906,0:-531.381,-50.8741,0,-531.381,-50.8741,-531.381	1/1:86:0,85,0:0:0:85,0:3017,0:-265.913,-25.5876,0,-265.913,-25.5876,-265.913	1/2:94:0,48,46:0:0:48,46:1687,1391:-232.832,-99.6873,-85.2378,-133.452,0,-119.604	1/1:144:0,144,0:0:0:144,0:5111,0:-460.124,-43.3483,0,-460.124,-43.3483,-460.124	1/1:81:0,79,2:0:0:79,2:2765,58:-248.813,-23.7814,0,-244.738,-19.4449,-244.136	1/1:304:0,303,0:0:0:303,0:10660,0:-940.323,-91.2121,0,-940.323,-91.2121,-940.323	1/1:274:0,274,0:0:0:274,0:9633,0:-866.859,-82.4822,0,-866.859,-82.4822,-866.859	1/1:37:0,37,0:0:0:37,0:1327,0:-119.732,-11.1381,0,-119.732,-11.1381,-119.732	1/2:296:0,174,122:0:0:174,122:6101,3862:-765.216,-278.377,-225.998,-487.149,0,-450.423	1/2:91:0,50,40:0:0:50,40:1747,1165:-224.429,-82.2986,-67.2471,-142.136,0,-130.095	1/2:134:0,70,64:0:0:70,64:2423,1924:-328.645,-136.925,-115.853,-191.838,0,-172.572	1/2:9:0,2,7:0:0:2,7:72,203:-20.425,-14.5279,-13.9259,-6.23466,0,-4.12745	1/1:26:0,26,0:0:0:26,0:902,0:-81.4908,-7.82678,0,-81.4908,-7.82678,-81.4908	1/1:3:0,3,0:0:0:3,0:103,0:-9.6096,-0.90309,0,-9.6096,-0.90309,-9.6096	1/1:23:0,23,0:0:0:23,0:826,0:-74.6639,-6.92369,0,-74.6639,-6.92369,-74.6639	1/2:15:0,7,8:0:0:7,8:245,249:-38.6248,-18.6631,-16.5559,-20.283,0,-17.8748	1/2:337:1,166,169:1:36:166,169:5879,5316:-845.996,-379.995,-332.906,-463.44,0,-415.448	1/2:124:0,58,66:0:0:58,66:2052,1934:-305.088,-137.939,-120.48,-167.461,0,-147.593	1/1:77:0,76,0:0:0:76,0:2678,0:-240.904,-22.8783,0,-240.904,-22.8783,-240.904	2/2:2:0,0,2:0:0:0,2:0,58:-4.93856,-4.93856,-4.93856,-0.60206,-0.60206,0	1/1:129:0,129,0:0:0:129,0:4533,0:-408.062,-38.8329,0,-408.062,-38.8329,-408.062	1/1:41:0,40,0:0:0:40,0:1392,0:-125.192,-12.0412,0,-125.192,-12.0412,-125.192	1/2:167:0,61,106:0:0:61,106:2158,3073:-392.335,-216.579,-198.216,-176.076,0,-144.167	1/2:151:0,72,79:0:0:72,79:2513,2354:-364.951,-167.612,-145.938,-197.643,0,-173.862	1/2:123:1,59,63:1:33:59,63:2039,1871:-289.981,-130.134,-115.042,-157.453,0,-141.156	1/1:58:0,56,0:0:0:56,0:1994,0:-176.119,-16.8577,0,-176.119,-16.8577,-176.119	1/2:136:0,49,87:0:0:49,87:1731,2730:-346.618,-205.628,-190.877,-141.322,0,-115.133	1/2:183:0,109,74:0:0:109,74:3852,2225:-459.834,-158.462,-125.65,-301.671,0,-279.395	1/2:139:0,64,74:0:0:64,74:2253,2215:-333.721,-157.305,-138.039,-176.448,0,-154.172	1/1:182:0,182,0:0:0:182,0:6470,0:-562.938,-54.7875,0,-562.938,-54.7875,-562.938	1/2:132:0,72,58:0:0:72,58:2543,1836:-334.648,-132.102,-110.428,-202.598,0,-185.138	1/2:12:0,8,4:0:0:8,4:288,120:-31.7344,-8.78287,-6.37463,-23.2487,0,-22.0446	1/1:131:0,131,0:0:0:131,0:4605,0:-414.429,-39.4349,0,-414.429,-39.4349,-414.429	1/1:60:0,60,0:0:0:60,0:2117,0:-187.733,-18.0618,0,-187.733,-18.0618,-187.733	2/2:12:0,1,11:0:0:1,11:36,348:-29.3615,-26.4189,-26.1179,-3.31133,-0.0140851,0	1/2:133:0,57,76:0:0:57,76:1972,2219:-317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chr02	24127236	.	A	G	113106	PASS	AB=0.548578;ABP=200.48;AC=51;AF=0.271277;AN=188;AO=5306;CIGAR=1X;DP=16808;DPB=16808;DPRA=1.37058;EPP=6728.97;EPPR=3537.32;GTI=4;LEN=1;MEANALT=1.06452;MQM=43.7906;MQMR=53.4563;NS=94;NUMALT=1;ODDS=2.1082;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189129;QR=411223;RO=11498;RPL=3447;RPP=1035.03;RPPR=2834.42;RPR=1859;RUN=1;SAF=2821;SAP=49.2128;SAR=2485;SRF=4101;SRP=2054.68;SRR=7397;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:207:207,0:207:7373:0:0:0,-62.3132,-662.252	0/1:220:90,130:90:3209:130:4668:-304.228,0,-222.783	0/0:506:506,0:506:18061:0:0:0,-152.321,-1601.48	0/1:114:46,68:46:1629:68:2440:-155.859,0,-112.569	0/1:62:16,46:16:572:46:1644:-106.289,0,-33.1414	0/1:298:164,134:164:5863:134:4750:-290.504,0,-426.627	0/1:247:91,156:91:3259:156:5549:-372.93,0,-219.143	0/0:118:118,0:118:4248:0:0:0,-35.5215,-382.488	0/0:183:181,2:181:6447:2:70:0,-48.4412,-564.929	0/0:206:205,1:205:7326:1:36:0,-59.1094,-641.929	0/1:156:47,109:47:1684:109:3879:-264.219,0,-104.878	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.805	0/1:167:56,111:56:2003:111:3980:-263.992,0,-130.012	0/1:200:103,97:103:3674:97:3478:-222.67,0,-264.586	0/1:117:48,69:48:1715:69:2448:-164.881,0,-118.96	0/0:90:88,2:88:3149:2:72:0,-20.2732,-276.804	0/0:84:84,0:84:3006:0:0:0,-25.2865,-270.747	0/0:72:72,0:72:2588:0:0:0,-21.6742,-232.909	0/1:479:292,187:292:10449:187:6682:-402.195,0,-781.457	0/0:171:171,0:171:6118:0:0:0,-51.4761,-550.105	0/0:168:168,0:168:6023:0:0:0,-50.573,-535.645	0/1:205:105,100:105:3776:100:3565:-231.697,0,-273.752	0/0:146:146,0:146:5222:0:0:0,-43.9504,-470.105	0/0:80:78,2:78:2800:2:72:0,-18.7223,-246.858	0/0:630:629,1:629:22543:1:36:0,-186.051,-2002.7	0/0:282:282,0:282:10066:0:0:0,-84.8905,-905.761	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:630:346,284:346:12340:284:10125:-660.358,0,-910.603	0/1:125:55,70:55:1976:70:2504:-160.776,0,-139.975	0/1:260:152,108:152:5401:108:3855:-229.864,0,-402.624	0/1:13:2,11:2:72:11:396:-27.1236,0,-2.92333	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:11:7,4:7:252:4:144:-7.84557,0,-19.7176	0/1:581:292,289:292:10467:289:10296:-665.651,0,-754.051	0/1:188:60,127:60:2139:127:4522:-307.995,0,-136.179	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.941	1/1:3:0,3:0:0:3:108:-8.62441,-0.90309,0	0/0:135:133,2:133:4768:2:72:0,-33.8247,-422.381	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.009	0/1:209:67,141:67:2386:141:5040:-323.222,0,-152.047	0/1:242:131,111:131:4678:111:3956:-236.51,0,-341.165	0/1:214:105,109:105:3767:109:3833:-242.443,0,-268.602	0/0:102:102,0:102:3648:0:0:0,-30.7051,-324.808	0/1:140:51,89:51:1820:89:3176:-205.428,0,-121.929	0/1:284:163,121:163:5824:121:4314:-258.809,0,-425.199	0/1:226:100,126:100:3569:126:4487:-289.936,0,-245.569	0/0:315:312,3:312:11164:3:104:0,-85.1216,-975.622	0/1:278:143,135:143:5115:135:4800:-319.35,0,-369.939	0/1:20:13,7:13:464:7:248:-13.7237,0,-35.5195	0/0:137:137,0:137:4904:0:0:0,-41.2411,-441.469	0/0:116:116,0:116:4148:0:0:0,-34.9195,-370.181	0/1:11:1,10:1:36:10:356:-25.1009,0,-0.286945	0/1:184:63,121:63:2248:121:4285:-281.391,0,-147.076	0/0:89:88,1:88:3148:1:36:0,-23.8889,-273.449	0/1:24:19,5:19:684:5:171:-7.39086,0,-53.8779	0/1:37:22,15:22:792:15:527:-32.899,0,-59.526	0/1:138:47,91:47:1666:91:3238:-211.522,0,-108.45	0/0:299:298,1:298:10654:1:36:0,-87.1052,-935.753	0/0:21:21,0:21:756:0:0:0,-6.32163,-67.2268	0/0:323:323,0:323:11592:0:0:0,-97.2327,-1033.1	0/1:350:191,159:191:6836:159:5662:-354.898,0,-500.382	0/1:98:24,74:24:864:74:2656:-192.526,0,-48.571	0/0:155:154,1:154:5524:1:36:0,-43.7569,-486.928	0/1:318:156,162:156:5584:162:5731:-362.047,0,-398.388	0/1:240:85,155:85:3052:155:5508:-392.155,0,-198.033	0/1:76:27,49:27:968:49:1756:-116.088,0,-64.3312	0/1:142:46,96:46:1639:96:3409:-243.395,0,-105.035	0/1:267:133,134:133:4748:134:4734:-307.466,0,-340.633	0/0:28:28,0:28:1004:0:0:0,-8.42884,-88.6956	0/0:71:71,0:71:2522:0:0:0,-21.3731,-226.85	0/1:100:28,72:28:1008:72:2559:-179.12,0,-60.9252	0/0:206:205,1:205:7334:1:36:0,-58.4139,-656.478	0/0:369:369,0:369:13167:0:0:0,-111.08,-1164.29	0/1:204:64,140:64:2274:140:5011:-333.809,0,-143.487	0/1:200:76,123:76:2715:123:4390:-296.116,0,-184.39	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:134:134,0:134:4795:0:0:0,-40.338,-424.715	0/1:164:64,100:64:2292:100:3571:-228.043,0,-157.146	0/1:334:152,182:152:5435:182:6512:-423.259,0,-383.365	0/0:316:316,0:316:11292:0:0:0,-95.1255,-995.833	0/0:185:184,1:184:6562:1:36:0,-52.0923,-578.099	0/0:265:265,0:265:9495:0:0:0,-79.7729,-840.902	0/1:394:196,197:196:6999:197:7038:-452.753,0,-500.063	0/1:66:15,51:15:536:51:1827:-129.945,0,-28.7002	0/1:153:53,100:53:1908:100:3583:-246.507,0,-125.932	0/0:100:100,0:100:3577:0:0:0,-30.103,-322.113	0/1:114:34,80:34:1220:80:2872:-187.859,0,-75.7894	0/1:147:36,111:36:1296:111:3961:-263.829,0,-72.6925	0/1:187:68,119:68:2444:119:4243:-285.727,0,-158.711	0/0:203:203,0:203:7262:0:0:0,-61.1091,-644.698	0/0:325:325,0:325:11616:0:0:0,-97.8347,-1026.19
chr02	24233965	.	GTGTT	ATGTT	46472.2	PASS	AB=0.548605;ABP=103.067;AC=50;AF=0.265957;AN=188;AO=2682;CIGAR=1X4M;DP=8357;DPB=8357;DPRA=1.41122;EPP=5826.9;EPPR=12293.5;GTI=4;LEN=1;MEANALT=1.15094;MQM=59.6275;MQMR=59.5252;NS=94;NUMALT=1;ODDS=0.254554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95963;QR=197137;RO=5664;RPL=2682;RPP=5826.9;RPPR=12293.5;RPR=0;RUN=1;SAF=0;SAP=5826.9;SAR=2682;SRF=0;SRP=12302.2;SRR=5664;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1455:0:0:0,-12.6433,-131.234	0/0:98:98,0:98:3429:0:0:0,-29.5009,-308.823	0/1:131:42,89:42:1499:89:3166:-245.716,0,-95.7536	0/0:150:150,0:150:5237:0:0:0,-45.1545,-471.476	0/1:81:46,35:46:1595:35:1260:-89.2659,0,-119.437	0/1:90:53,37:53:1821:37:1332:-93.0888,0,-137.042	0/1:164:73,91:73:2534:91:3249:-243.157,0,-178.94	0/1:175:93,82:93:3236:82:2933:-211.316,0,-238.724	0/0:77:77,0:77:2645:0:0:0,-23.1793,-238.271	0/0:92:92,0:92:3249:0:0:0,-27.6948,-291.929	0/0:15:14,1:14:490:1:32:0,-1.31614,-41.2319	0/1:41:26,15:26:921:15:536:-36.2326,0,-70.7932	0/0:34:34,0:34:1150:0:0:0,-10.235,-103.794	0/1:47:20,27:20:688:27:968:-73.2713,0,-48.0912	0/1:49:16,33:16:565:33:1188:-92.4781,0,-36.4256	0/1:31:15,16:15:538:16:572:-42.4815,0,-39.4239	0/0:24:24,0:24:823:0:0:0,-7.22472,-74.3828	0/0:33:33,0:33:1170:0:0:0,-9.93399,-105.593	0/0:8:8,0:8:281:0:0:0,-2.40824,-25.6304	0/1:239:117,122:117:4077:122:4357:-320.084,0,-292.259	0/0:114:114,0:114:3944:0:0:0,-34.3174,-355.082	0/0:185:185,0:185:6418:0:0:0,-55.6905,-577.724	0/1:132:51,81:51:1763:81:2908:-222.104,0,-118.512	0/0:117:117,0:117:4123:0:0:0,-35.2205,-371.203	0/0:58:58,0:58:2003:0:0:0,-17.4597,-180.529	0/0:390:386,4:386:13393:4:144:0,-104.088,-1186.29	0/0:177:177,0:177:6124:0:0:0,-53.2823,-548.996	0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4407	0/1:366:155,211:155:5456:211:7560:-570.191,0,-380.979	0/1:122:77,45:77:2668:45:1608:-108.276,0,-203.637	0/1:166:84,82:84:2908:82:2937:-214.585,0,-211.917	0/1:9:5,4:5:166:4:144:-10.5996,0,-12.5573	0/0:22:22,0:22:762:0:0:0,-6.62266,-68.8985	0/0:5:5,0:5:169:0:0:0,-1.50515,-15.534	0/0:11:11,0:11:391:0:0:0,-3.31133,-35.459	0/1:14:2,9:2:68:9:324:-25.8495,0,-2.80642	0/1:85:38,47:38:1325:47:1688:-126.618,0,-93.9045	0/1:275:115,159:115:3969:159:5694:-429.287,0,-272.564	0/0:23:23,0:23:800:0:0:0,-6.92369,-72.3093	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:161:161,0:161:5623:0:0:0,-48.4658,-506.151	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0942	0/1:190:91,99:91:3131:99:3524:-259.995,0,-224.794	0/1:26:15,11:15:530:11:396:-28.1536,0,-40.2038	0/1:48:25,23:25:841:23:813:-59.0385,0,-61.5479	0/0:121:121,0:121:4206:0:0:0,-36.4246,-378.726	0/1:108:59,49:59:2045:49:1744:-124.72,0,-150.773	0/1:180:85,95:85:2960:95:3397:-251.713,0,-212.429	0/1:144:52,92:52:1821:92:3294:-252.985,0,-120.821	0/0:54:54,0:54:1901:0:0:0,-16.2556,-171.367	0/1:192:79,113:79:2769:113:4030:-305.07,0,-191.627	0/1:12:5,7:5:175:7:252:-19.3988,0,-12.4808	0/0:117:117,0:117:4121:0:0:0,-35.2205,-371.048	0/0:82:82,0:82:2860:0:0:0,-24.6845,-256.761	0/1:25:12,13:12:404:13:468:-34.9257,0,-29.1569	0/1:118:43,75:43:1513:75:2680:-205.643,0,-100.923	0/0:39:39,0:39:1296:0:0:0,-11.7402,-116.929	0/1:14:9,5:9:303:5:180:-12.3376,0,-23.3819	0/1:22:11,11:11:378:11:389:-28.706,0,-27.7277	0/1:83:40,43:40:1394:43:1533:-113.271,0,-100.769	0/0:57:57,0:57:1948:0:0:0,-17.1587,-175.57	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:199:199,0:199:6958:0:0:0,-59.905,-626.264	0/1:160:73,86:73:2531:86:3084:-229.568,0,-179.825	0/1:54:25,29:25:864:29:1044:-78.0146,0,-61.379	0/0:63:63,0:63:2173:0:0:0,-18.9649,-195.782	0/1:191:73,116:73:2558:116:4156:-316.875,0,-172.487	0/1:51:15,35:15:516:35:1252:-97.7269,0,-31.5008	0/1:12:8,4:8:281:4:144:-9.70126,0,-22.0134	0/1:49:20,29:20:708:29:1040:-79.1557,0,-49.2951	0/1:47:24,23:24:827:23:828:-60.6925,0,-59.7382	0/0:31:31,0:31:1076:0:0:0,-9.33193,-94.883	0/0:116:116,0:116:4002:0:0:0,-34.9195,-360.355	0/1:53:18,35:18:628:35:1242:-96.1195,0,-40.8913	0/0:137:136,0:136:4731:0:0:0,-40.9401,-425.719	0/0:189:189,0:189:6610:0:0:0,-56.8947,-593.91	0/1:113:47,66:47:1636:66:2372:-179.675,0,-113.503	0/1:99:35,64:35:1229:64:2304:-177.818,0,-81.1027	0/0:14:14,0:14:480:0:0:0,-4.21442,-43.5253	0/0:117:115,2:115:4008:2:72:0,-28.3838,-351.783	0/1:121:55,65:55:1909:65:2297:-170.587,0,-135.654	0/1:276:121,154:121:4226:154:5510:-412.669,0,-297.378	0/0:86:86,0:86:3000:0:0:0,-25.8886,-270.208	0/0:23:23,0:23:810:0:0:0,-6.92369,-73.2181	0/0:37:37,0:37:1272:0:0:0,-11.1381,-114.778	0/1:86:45,41:45:1540:41:1474:-107.064,0,-112.999	0/1:25:12,13:12:415:13:468:-34.9293,0,-30.1553	0/1:52:18,34:18:642:34:1220:-94.4451,0,-41.2616	0/0:30:30,0:30:1074:0:0:0,-9.0309,-95.5194	0/1:26:9,17:9:318:17:612:-47.5867,0,-20.9419	0/1:42:25,17:25:860:17:608:-42.3995,0,-65.0683	0/1:33:9,24:9:320:24:864:-68.1486,0,-19.2086	0/0:77:77,0:77:2700:0:0:0,-23.1793,-242.922	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9553
chr02	24233978	.	G	C	112977	PASS	AB=0.440567;ABP=152.459;AC=138;AF=0.734043;AN=188;AO=5574;CIGAR=1X;DP=8309;DPB=8309;DPRA=0;EPP=12106.8;EPPR=5933.3;GTI=4;LEN=1;MEANALT=1.04255;MQM=59.5651;MQMR=59.576;NS=94;NUMALT=1;ODDS=1.31182;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199121;QR=97828;RO=2731;RPL=5574;RPP=12106.8;RPPR=5933.3;RPR=0;RUN=1;SAF=0;SAP=12106.8;SAR=5574;SRF=0;SRP=5933.3;SRR=2731;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,40:0:0:40:1440:-129.53,-12.0412,0	1/1:98:0,98:0:0:98:3501:-315.288,-29.5009,0	0/1:130:88,42:88:3152:42:1512:-97.2244,0,-244.76	1/1:146:0,146:0:0:146:5213:-469.299,-43.9504,0	0/1:81:36,45:36:1269:45:1608:-120.609,0,-90.0712	0/1:90:37,53:37:1332:53:1896:-143.384,0,-93.0888	0/1:164:93,71:93:3332:71:2541:-179.565,0,-250.59	0/1:178:87,91:87:3112:91:3268:-240.705,0,-226.514	1/1:75:0,75:0:0:75:2669:-240.422,-22.5773,0	1/1:92:0,92:0:0:92:3285:-295.006,-27.6948,0	1/1:15:1,14:1:32:14:500:-42.1369,-1.31614,0	0/1:42:16,26:16:568:26:932:-71.4779,0,-38.8086	1/1:33:0,33:0:0:33:1175:-106.043,-9.93399,0	0/1:47:27,20:27:968:20:720:-50.9804,0,-73.2713	0/1:48:33,15:33:1184:15:540:-34.4824,0,-92.4189	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7759	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:33:0,33:0:0:33:1179:-106.401,-9.93399,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:240:125,115:125:4468:115:4128:-296.09,0,-329.262	1/1:112:0,112:0:0:112:3985:-358.777,-33.7154,0	1/1:184:0,184:0:0:184:6562:-590.657,-55.3895,0	0/1:130:79,51:79:2828:51:1832:-124.919,0,-215.51	1/1:115:0,115:0:0:115:4105:-369.594,-34.6185,0	1/1:57:0,57:0:0:57:2044:-184.213,-17.1587,0	1/1:384:5,379:5:180:379:13542:-1195.78,-99.0435,0	1/1:174:0,173:0:0:173:6149:-550.51,-52.0782,0	1/1:11:0,11:0:0:11:366:-33.2585,-3.31133,0	0/1:370:217,153:217:7769:153:5461:-380.214,0,-587.289	0/1:120:46,74:46:1637:74:2656:-203.158,0,-111.485	0/1:161:82,79:82:2936:79:2828:-206.206,0,-215.99	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.5996	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:4:0,4:0:0:4:144:-13.3052,-1.20412,0	1/1:11:0,11:0:0:11:396:-35.9125,-3.31133,0	0/1:14:12,2:12:432:2:72:-2.6223,0,-34.4964	0/1:85:47,38:47:1683:38:1349:-96.0637,0,-126.168	0/1:275:164,111:164:5849:111:3920:-270.133,0,-440.672	1/1:23:0,23:0:0:23:820:-74.1143,-6.92369,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	1/1:159:0,159:0:0:159:5651:-508.552,-47.8638,0	1/1:13:0,13:0:0:13:464:-42.0929,-3.91339,0	0/1:189:102,87:102:3644:87:3115:-223.67,0,-271.096	0/1:26:11,15:11:396:15:540:-41.1074,0,-28.1536	0/1:47:22,25:22:792:25:900:-67.1699,0,-57.4549	1/1:119:0,119:0:0:119:4242:-381.943,-35.8226,0	0/1:106:49,56:49:1756:56:2008:-147.477,0,-126.34	0/1:180:96,84:96:3452:84:3008:-216.745,0,-256.584	0/1:147:95,51:95:3412:51:1821:-120.004,0,-262.468	1/1:54:0,54:0:0:54:1924:-173.433,-16.2556,0	0/1:194:116,78:116:4160:78:2788:-192.704,0,-316.164	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.3988	1/1:117:0,117:0:0:117:4191:-377.338,-35.2205,0	1/1:82:0,82:0:0:82:2921:-262.266,-24.6845,0	0/1:25:13,12:13:468:12:428:-31.3331,0,-34.9257	0/1:117:74,43:74:2656:43:1529:-102.662,0,-204.056	1/1:39:0,39:0:0:39:1381:-124.581,-11.7402,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:84:44,40:44:1572:40:1436:-104.251,0,-116.478	1/1:55:0,55:0:0:55:1957:-176.305,-16.5567,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:198:0,198:0:0:198:7089:-638.006,-59.6039,0	0/1:159:87,72:87:3116:72:2554:-182.239,0,-232.762	0/1:54:30,24:30:1068:24:845:-60.1023,0,-80.1718	1/1:62:0,62:0:0:62:2220:-199.691,-18.6639,0	0/1:193:122,71:122:4380:71:2548:-171.469,0,-335.357	0/1:51:36,15:36:1292:15:536:-33.2176,0,-101.223	0/1:12:4,8:4:144:8:288:-22.6504,0,-9.70126	0/1:49:29,20:29:1040:20:716:-50.0172,0,-79.1557	0/1:46:23,23:23:824:23:828:-60.137,0,-60.6327	1/1:30:0,30:0:0:30:1065:-93.798,-9.0309,0	1/1:114:0,114:0:0:114:4040:-363.758,-34.3174,0	0/1:54:36,18:36:1292:18:648:-42.3963,0,-100.317	1/1:135:0,135:0:0:135:4840:-434.593,-40.6391,0	1/1:188:0,188:0:0:188:6714:-603.155,-56.5936,0	0/1:112:66,46:66:2372:46:1648:-114.883,0,-179.976	0/1:100:65,35:65:2332:35:1256:-83.2341,0,-180.036	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:116:2,114:2:68:114:4069:-358.854,-28.4618,0	0/1:119:65,54:65:2336:54:1940:-138.683,0,-174.584	0/1:282:161,121:161:5765:121:4318:-303.894,0,-433.8	1/1:86:0,86:0:0:86:3092:-278.475,-25.8886,0	1/1:23:0,23:0:0:23:824:-74.481,-6.92369,0	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	0/1:84:41,43:41:1472:43:1520:-111.804,0,-107.486	0/1:25:13,12:13:464:12:432:-31.6954,0,-34.5671	0/1:52:34,18:34:1224:18:644:-41.4422,0,-94.8053	1/1:29:0,29:0:0:29:1044:-92.8208,-8.72987,0	0/1:25:17,8:17:612:8:284:-18.2895,0,-47.8877	0/1:40:15,25:15:540:25:900:-69.2752,0,-36.8861	0/1:31:22,9:22:792:9:324:-20.1739,0,-62.2737	1/1:76:0,76:0:0:76:2728:-245.753,-22.8783,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0
chr02	24248448	.	T	C	113467	PASS	AB=0.495724;ABP=3.6602;AC=137;AF=0.744565;AN=184;AO=5448;CIGAR=1X;DP=7515;DPB=7515;DPRA=0;EPP=11789.8;EPPR=4491.44;GTI=1;LEN=1;MEANALT=1;MQM=59.853;MQMR=59.954;NS=92;NUMALT=1;ODDS=0.252826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194743;QR=74087;RO=2067;RPL=5;RPP=11789.8;RPPR=4491.44;RPR=5443;RUN=1;SAF=5448;SAP=11833.2;SAR=0;SRF=2067;SRP=4491.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:58:0,58:0:0:58:2053:-185.04,-17.4597,0	1/1:58:0,58:0:0:58:2080:-187.464,-17.4597,0	0/1:179:91,88:91:3261:88:3160:-230.739,0,-239.824	1/1:188:0,188:0:0:188:6717:-604.598,-56.5936,0	0/1:79:34,45:34:1224:45:1620:-122.309,0,-86.6857	0/1:32:16,16:16:568:16:576:-42.542,0,-41.8189	0/1:57:24,33:24:864:33:1176:-88.9891,0,-60.9239	0/1:118:59,59:59:2120:59:2104:-152.629,0,-155.547	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:66:0,66:0:0:66:2368:-213.369,-19.868,0	1/1:49:0,49:0:0:49:1764:-159.04,-14.7505,0	0/1:115:66,49:66:2372:49:1764:-124.417,0,-179.116	1/1:116:0,116:0:0:116:4151:-372.993,-34.9195,0	0/1:44:19,25:19:684:25:896:-67.715,0,-48.645	0/1:106:55,51:55:1976:51:1832:-133.252,0,-146.205	0/1:80:39,41:39:1404:41:1447:-106.194,0,-102.577	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:47:0,47:0:0:47:1684:-151.842,-14.1484,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:153:66,87:66:2368:87:3108:-233.887,0,-167.32	1/1:144:0,144:0:0:144:5112:-460.184,-43.3483,0	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	0/1:88:43,45:43:1536:45:1608:-118.519,0,-112.042	1/1:68:0,68:0:0:68:2415:-217.6,-20.47,0	1/1:80:0,80:0:0:80:2860:-257.638,-24.0824,0	1/1:153:0,153:0:0:153:5460:-491.53,-46.0576,0	1/1:179:0,179:0:0:179:6402:-576.265,-53.8844,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:186:101,85:101:3600:85:3044:-218.198,0,-268.214	0/1:94:51,43:51:1828:43:1540:-110.596,0,-136.49	0/1:53:20,33:20:720:33:1180:-90.5535,0,-49.1742	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:392:-35.4847,-3.31133,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:13:0,13:0:0:13:464:-42.0962,-3.91339,0	1/1:4:0,4:0:0:4:144:-12.8107,-1.20412,0	0/1:242:100,142:100:3596:142:5081:-384.353,0,-250.996	0/1:58:29,29:29:1044:29:1044:-76.8105,0,-76.8151	1/1:31:0,31:0:0:31:1108:-99.9248,-9.33193,0	0/1:6:5,1:5:165:1:36:-1.79209,0,-13.3674	1/1:99:0,99:0:0:99:3548:-319.528,-29.802,0	1/1:38:0,38:0:0:38:1333:-120.261,-11.4391,0	0/1:123:72,51:72:2592:51:1832:-128.134,0,-196.501	0/1:86:46,40:46:1656:40:1432:-103.288,0,-123.44	0/1:80:37,43:37:1332:43:1505:-111.651,0,-96.1	1/1:97:1,96:1:36:96:3444:-306.392,-25.6016,0	0/1:127:84,43:84:2985:43:1544:-101.016,0,-230.605	0/1:129:62,67:62:2224:67:2404:-177.784,0,-161.585	0/1:88:45,43:45:1601:43:1536:-112.042,0,-117.881	1/1:79:0,79:0:0:79:2832:-255.116,-23.7814,0	0/1:95:48,47:48:1728:47:1692:-123.969,0,-127.203	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:183:0,183:0:0:183:6533:-588.051,-55.0885,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:140:79,61:79:2828:61:2169:-153.331,0,-212.615	1/1:54:0,54:0:0:54:1917:-172.805,-16.2556,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:56:26,30:26:936:30:1072:-79.9348,0,-67.7018	1/1:106:1,105:1:36:105:3764:-335.348,-28.3109,0	.:.:.:.:.:.:.:.	1/1:106:0,106:0:0:106:3778:-340.217,-31.9092,0	0/1:103:52,51:52:1872:51:1832:-134.152,0,-137.753	0/1:54:21,33:21:752:33:1188:-90.9032,0,-51.7506	1/1:79:0,79:0:0:79:2819:-253.947,-23.7814,0	0/1:138:72,66:72:2588:66:2353:-170.482,0,-191.622	0/1:112:88,24:88:3137:24:856:-43.6458,0,-248.84	0/1:46:21,25:21:752:25:892:-66.7477,0,-54.1589	0/1:73:40,33:40:1440:33:1188:-85.2534,0,-107.923	0/1:47:21,26:21:741:26:936:-70.4029,0,-52.8632	1/1:10:0,10:0:0:10:348:-31.6533,-3.0103,0	1/1:66:0,66:0:0:66:2364:-213.005,-19.868,0	0/1:101:50,51:50:1781:51:1811:-132.759,0,-130.167	1/1:139:1,138:1:36:138:4915:-438.899,-38.2449,0	1/1:171:0,171:0:0:171:6124:-551.221,-51.4761,0	0/1:86:24,62:24:864:62:2205:-172.822,0,-52.194	0/1:87:51,36:51:1824:36:1292:-90.3942,0,-138.251	.:.:.:.:.:.:.:.	1/1:118:0,118:0:0:118:4224:-380.331,-35.5215,0	0/1:64:33,31:33:1180:31:1104:-80.4047,0,-87.2421	0/1:140:63,77:63:2268:77:2741:-204.783,0,-162.238	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	1/1:103:0,103:0:0:103:3679:-330.435,-31.0061,0	1/1:53:0,53:0:0:53:1904:-171.607,-15.9546,0	0/1:139:64,75:64:2304:75:2665:-198.251,0,-165.763	0/1:31:16,15:16:576:15:536:-39.2429,0,-42.8431	0/1:67:24,43:24:855:43:1540:-118.724,0,-57.1012	1/1:99:0,99:0:0:99:3552:-319.886,-29.802,0	0/1:39:16,23:16:576:23:824:-62.7073,0,-40.4348	0/1:72:38,34:38:1364:34:1214:-87.8832,0,-101.383	0/1:67:45,22:45:1605:22:784:-50.7087,0,-124.569	1/1:60:0,60:0:0:60:2140:-192.863,-18.0618,0	1/1:134:0,134:0:0:134:4792:-431.431,-40.338,0
chr02	24261018	.	GTTG	ATTG,ATTT	127500	PASS	AB=0.341935,0.399088;ABP=3366.69,779.158;AC=64,33;AF=0.340426,0.175532;AN=188;AO=5300,3502;CIGAR=1X3M,1X2M1X;DP=15500;DPB=15500;DPRA=0,0;EPP=11511.8,7607.51;EPPR=14456.3;GTI=3;LEN=1,4;MEANALT=1.87234,2.4186;MQM=59.9647,53.265;MQMR=59.6445;NS=94;NUMALT=2;ODDS=6.82331;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=188609,124122;QR=234971;RO=6656;RPL=0,0;RPP=11511.8,7607.51;RPPR=14456.3;RPR=5300,3502;RUN=1,1;SAF=5300,3502;SAP=11511.8,7607.51;SAR=0,0;SRF=6656;SRP=14456.3;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:18,13,0:18:642:13,0:449,0:-31.4056,0,-48.778,-36.8241,-52.6914,-89.1655	0/1:175:100,73,0:100:3500:73,0:2594,0:-181.414,0,-262.82,-211.517,-284.795,-496.174	0/1:188:87,101,0:87:3083:101,0:3606,0:-268.149,0,-221.105,-294.339,-251.509,-545.493	0/2:532:162,77,292:162:5711:77,292:2768,10395:-794.35,-617.311,-1059.02,0,-239.074,-376.98	0/2:171:61,27,82:61:2182:27,82:942,2915:-218.283,-160.034,-329.834,0,-101.321,-153.247	0/2:88:29,17,42:29:1040:17,42:612,1494:-112.687,-71.4791,-151.19,0,-34.8889,-72.1823	0/1:146:81,64,0:81:2874:64,0:2304,0:-163.69,0,-214.953,-188.073,-234.219,-422.216	0/1:186:103,81,2:103:3631:81,2:2912,65:-206.6,0,-271.153,-232.366,-290.296,-527.269	0/1:126:66,56,0:66:2343:56,0:1991,0:-142.377,0,-173.816,-162.245,-190.674,-352.923	0/1:105:69,36,0:69:2422:36,0:1292,0:-84.9756,0,-186.401,-105.747,-197.238,-302.629	0/1:101:44,57,0:44:1566:57,0:2029,0:-152.477,0,-110.821,-165.722,-127.979,-293.346	0/1:144:53,91,0:53:1870:91,0:3234,0:-247.931,0,-125.214,-263.886,-152.608,-416.14	0/1:112:47,64,0:47:1674:64,0:2277,0:-171.564,0,-117.311,-185.712,-136.577,-322.147	0/2:131:44,34,53:44:1552:34,53:1216,1863:-137.96,-52.0486,-168.187,0,-27.2138,-110.415	0/2:186:47,32,107:47:1679:32,107:1137,3815:-295.539,-217.066,-344.326,0,-44.2734,-104.683	0/2:141:45,36,59:45:1609:36,59:1281,2081:-155.129,-64.2801,-184.637,0,-26.7989,-113.431	0/1:78:34,42,1:34:1201:42,1:1485,36:-110.743,0,-85.127,-118.045,-94.8372,-215.483	0/2:131:40,23,68:40:1422:23,68:813,2405:-183.224,-129.053,-237.993,0,-49.6526,-95.394	0/1:112:55,57,0:55:1948:57,0:2014,0:-147.815,0,-141.857,-164.372,-159.015,-323.034	0/2:489:164,77,246:164:5783:77,246:2757,8764:-662.837,-487.378,-935.062,0,-246.031,-396.808	0/2:312:124,42,146:124:4391:42,146:1512,5184:-383.998,-297.953,-642.074,0,-233.386,-312.809	0/1:184:99,84,0:99:3525:84,0:2986,0:-213.522,0,-261.995,-243.324,-287.282,-530.609	0/1:84:51,33,0:51:1814:33,0:1176,0:-80.8531,0,-138.255,-96.2056,-148.189,-244.039	0/2:306:126,23,156:126:4428:23,156:828,5532:-411.169,-381.537,-734.636,0,-292.458,-313.059	0/1:98:59,39,0:59:2078:39,0:1359,0:-93.1013,0,-157.773,-110.862,-169.513,-280.026	0/1:346:194,152,0:194:6814:152,0:5366,0:-378.909,0,-508.87,-437.309,-554.627,-991.584	0/1:334:188,144,0:188:6617:144,0:5119,0:-360.549,0,-495.074,-417.143,-538.422,-955.571	0/1:59:22,37,0:22:773:37,0:1328,0:-102.061,0,-52.121,-108.684,-63.2591,-171.589	0/1:459:230,226,0:230:8163:226,0:8038,0:-585.836,0,-597.083,-655.073,-665.116,-1320.17	0/1:155:82,73,0:82:2912:73,0:2583,0:-186.055,0,-215.656,-210.74,-237.631,-448.016	0/2:187:70,32,85:70:2485:32,85:1133,3017:-224.342,-153.124,-345.885,0,-110.105,-176.807	0/1:17:9,8,0:9:321:8,0:288,0:-21.1499,0,-24.1113,-23.8592,-26.5195,-50.0204	0/1:28:13,15,0:13:462:15,0:521,0:-38.7875,0,-33.4877,-42.7009,-38.0032,-80.3525	0/1:11:3,8,0:3:108:8,0:288,0:-22.9561,0,-6.76384,-23.8592,-9.17208,-32.6714	0/1:9:7,1,1:7:252:1,1:36,36:-0.830463,0,-20.2613,-0.00510233,-17.6296,-20.266	0/2:20:10,3,7:10:360:3,7:108,250:-17.1854,-11.3817,-39.8561,0,-20.5619,-27.267	0/1:303:113,189,0:113:4026:189,0:6785,0:-519.447,0,-271.248,-553.463,-328.143,-881.609	0/2:409:174,68,166:174:6186:68,166:2398,5921:-428.173,-285.3,-768.714,0,-308.634,-453.915	1/2:170:41,46,82:41:1444:46,82:1641,2905:-239.46,-118.028,-221.727,-16.2305,0,-109.091	0/2:15:3,1,11:3:107:1,11:36,396:-30.8954,-28.8607,-37.2826,0,-5.78183,-5.40875	0/1:260:131,129,0:131:4600:129,0:4569,0:-333.106,0,-335.811,-372.54,-374.644,-746.832	0/1:81:38,43,0:38:1352:43,0:1514,0:-112.166,0,-97.5969,-123.605,-110.541,-233.792	0/1:195:116,79,0:116:4060:79,0:2824,0:-195.696,0,-306.884,-230.616,-330.665,-560.926	0/1:127:49,77,0:49:1736:77,0:2749,0:-209.362,0,-118.227,-224.112,-141.406,-365.522	0/2:166:51,42,73:51:1776:42,73:1512,2573:-193.422,-85.3999,-217.106,0,-20.9673,-122.369	0/1:96:56,40,0:56:1989:40,0:1436,0:-100.639,0,-150.361,-117.496,-162.402,-279.541	0/2:285:103,38,144:103:3628:38,144:1340,5091:-382.409,-304.309,-588.238,0,-186.262,-252.02	0/1:249:119,128,2:119:4210:128,2:4581,72:-337.739,0,-304.346,-367.692,-337.007,-709.971	0/1:145:76,69,0:76:2699:69,0:2464,0:-178.365,0,-199.497,-201.243,-220.268,-421.156	0/1:156:75,80,1:75:2640:80,1:2861,36:-210.707,0,-190.74,-230.351,-211.889,-444.877	0/1:272:177,94,0:177:6219:94,0:3369,0:-221.317,0,-477.706,-274.599,-506.003,-780.606	1/2:42:6,25,11:6:215:25,11:896,396:-85.9968,-14.7274,-24.7361,-55.5416,0,-69.7651	0/1:180:105,74,0:105:3707:74,0:2630,0:-182.75,0,-279.472,-214.359,-301.749,-516.063	0/1:37:27,10,0:27:952:10,0:360,0:-21.6062,0,-74.8298,-29.734,-77.8401,-107.216	0/1:30:12,18,0:12:422:18,0:644,0:-49.2597,0,-29.2812,-52.8721,-34.6997,-87.2179	0/2:351:124,49,177:124:4388:49,177:1706,6269:-471.704,-370.344,-713,0,-218.724,-304.129	0/2:94:35,10,49:35:1234:10,49:345,1746:-131.383,-113.895,-211.358,0,-72.4561,-85.7296	0/2:24:6,3,15:6:216:3,15:108,532:-41.4503,-34.4433,-51.1664,0,-8.81225,-13.1091	0/1:16:9,7,0:9:324:7,0:252,0:-18.2125,0,-24.6894,-20.9217,-26.7966,-47.3585	0/1:79:45,34,0:45:1576:34,0:1167,0:-81.5457,0,-118.347,-95.092,-128.582,-223.328	0/2:261:97,61,102:97:3458:61,102:2196,3607:-262.553,-112.567,-376.047,0,-102.654,-251.133	0/1:9:6,3,0:6:216:3,0:108,0:-7.3659,0,-17.0812,-9.17208,-17.9843,-26.7966	0/1:277:142,134,1:142:4990:134,1:4753,36:-344.408,0,-365.529,-384.221,-402.934,-789.793	0/2:389:134,64,190:134:4716:64,190:2292,6743:-508.006,-361.425,-726.072,0,-196.991,-326.714	0/1:105:52,46,7:52:1844:46,7:1591,252:-113.615,0,-136.38,-108.737,-129.697,-256.866	0/1:118:60,58,0:60:2102:58,0:2060,0:-150.148,0,-153.925,-168.21,-171.385,-339.242	0/2:250:98,31,120:98:3433:31,120:1112,4233:-313.625,-252.424,-522.419,0,-188.618,-243.198	0/1:160:87,73,0:87:3031:73,0:2601,0:-186.172,0,-224.582,-212.362,-246.557,-458.566	0/1:34:17,17,0:17:598:17,0:612,0:-45.1784,0,-43.9081,-50.2959,-49.0256,-98.9659	0/1:112:53,59,0:53:1862:59,0:2116,0:-156.993,0,-134.099,-172.948,-151.859,-324.453	0/2:149:46,35,68:46:1611:35,68:1256,2384:-179.821,-91.2152,-211.759,0,-28.6211,-110.605	0/1:20:10,10,0:10:352:10,0:337,0:-24.6335,0,-25.9975,-27.6438,-29.0078,-56.3072	0/1:179:99,77,0:99:3473:77,0:2730,0:-192.6,0,-259.383,-222.402,-282.562,-504.971	1/2:93:16,22,55:16:575:22,55:788,1947:-170.693,-111.244,-151.532,-17.3539,0,-47.7068	0/1:196:122,73,0:122:4291:73,0:2594,0:-174.646,0,-326.877,-211.371,-348.852,-560.229	0/1:282:130,148,4:130:4641:148,4:5247,144:-388.316,0,-333.792,-415.709,-366.604,-792.853	0/1:149:75,72,2:75:2654:72,2:2550,65:-185.171,0,-194.529,-202.508,-210.962,-418.08	0/1:156:95,60,1:95:3345:60,1:2156,36:-147.288,0,-254.249,-172.953,-269.378,-444.966	0/1:18:8,10,0:8:288:10,0:315,0:-23.2353,0,-20.8489,-25.6436,-23.8592,-49.1629	0/1:206:82,124,0:82:2880:124,0:4364,0:-330.922,0,-197.417,-355.607,-234.745,-590	0/2:265:99,64,102:99:3477:64,102:2289,3604:-262.776,-105.929,-369.65,0,-96.3342,-252.278	0/2:508:156,64,286:156:5484:64,286:2270,10134:-773.981,-636.007,-1063.08,0,-261.406,-360.247	0/1:173:79,92,0:79:2787:92,0:3240,0:-239.983,0,-199.22,-263.764,-226.914,-490.685	0/1:99:36,63,0:36:1273:63,0:2253,0:-173.229,0,-85.0651,-184.066,-104.03,-287.741	0/2:197:60,49,87:60:2142:49,87:1756,3048:-228.72,-103.563,-263.38,0,-31.3473,-148.374	0/2:318:86,66,165:86:3014:66,165:2372,5803:-444.858,-277.234,-502.232,0,-51.3462,-195.191	0/2:100:34,20,46:34:1211:20,46:701,1632:-122.076,-75.2715,-167.957,0,-41.6697,-84.861	0/1:141:56,85,0:56:1950:85,0:3050,0:-232.283,0,-133.3,-249.141,-158.887,-407.676	0/1:119:42,77,0:42:1485:77,0:2759,0:-212.729,0,-98.0797,-225.372,-121.259,-346.276	0/1:58:25,33,0:25:883:33,0:1184,0:-89.4086,0,-62.3236,-96.9343,-72.2576,-168.836	0/2:198:63,36,98:63:2211:36,98:1288,3492:-264.906,-178.848,-347.834,0,-74.7962,-150.32	0/2:150:36,24,90:36:1249:24,90:845,3173:-246.505,-188.552,-282.851,0,-32.7298,-74.4296	0/1:103:66,37,0:66:2329:37,0:1319,0:-88.0019,0,-178.857,-107.87,-189.995,-297.51	0/1:144:62,82,0:62:2175:82,0:2936,0:-221.125,0,-152.666,-239.789,-177.351,-416.785
chr02	24261041	.	AA	GA	57065.4	PASS	AB=0.48347;ABP=19.809;AC=34;AF=0.180851;AN=188;AO=3440;CIGAR=1X1M;DP=15475;DPB=15475;DPRA=1.65583;EPP=7446.84;EPPR=25744.9;GTI=3;LEN=1;MEANALT=1.13636;MQM=53.3276;MQMR=59.7624;NS=94;NUMALT=1;ODDS=0.674426;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123067;QR=414620;RO=12018;RPL=3437;RPP=7446.84;RPPR=25727.6;RPR=3;RUN=1;SAF=3440;SAP=7472.88;SAR=0;SRF=12016;SRP=26082.4;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1033:0:0:0,-9.33193,-93.2681	0/0:174:174,0:174:5943:0:0:0,-52.3792,-534.943	0/0:188:188,0:188:6522:0:0:0,-56.5936,-587.084	0/1:526:238,288:238:8123:288:10285:-763.977,0,-572.625	0/1:170:89,81:89:2996:81:2889:-208.188,0,-218.693	0/1:88:46,42:46:1597:42:1492:-107.748,0,-117.526	0/0:149:149,0:149:5095:0:0:0,-44.8535,-458.701	0/0:187:185,2:185:6360:2:72:0,-49.4656,-565.56	0/0:126:126,0:126:4315:0:0:0,-37.9298,-388.307	0/0:105:104,0:104:3581:0:0:0,-31.3071,-321.889	0/0:103:103,0:103:3589:0:0:0,-31.0061,-323.211	0/0:143:143,0:143:5018:0:0:0,-43.0473,-451.748	0/0:113:113,0:113:3997:0:0:0,-34.0164,-359.909	0/1:129:78,51:78:2721:51:1805:-123.512,0,-206.298	0/1:182:78,104:78:2745:104:3729:-279.929,0,-192.479	0/1:139:81,58:81:2844:58:2060:-142.779,0,-214.346	0/0:79:78,1:78:2745:1:36:0,-20.1882,-243.365	0/1:132:64,68:64:2239:68:2436:-179.091,0,-162.019	0/0:113:112,0:112:3945:0:0:0,-33.7154,-354.864	0/1:484:242,241:242:8257:241:8612:-627.453,0,-597.417	0/1:308:165,143:165:5484:143:5112:-366.402,0,-400.007	0/0:186:186,0:186:6348:0:0:0,-55.9916,-570.921	0/0:84:84,0:84:2954:0:0:0,-25.2865,-266.088	0/1:302:147,155:147:5004:155:5546:-406.372,0,-359.167	0/0:99:99,0:99:3307:0:0:0,-29.802,-297.837	0/0:345:345,0:345:11882:0:0:0,-103.855,-1069.04	0/0:336:336,0:336:11525:0:0:0,-101.146,-1036.84	0/0:59:59,0:59:2096:0:0:0,-17.7608,-188.901	0/0:461:460,1:460:15893:1:36:0,-135.177,-1426.35	0/0:158:158,0:158:5467:0:0:0,-47.5627,-492.161	0/1:186:103,83:103:3574:83:2976:-211.667,0,-265.619	0/0:17:17,0:17:606:0:0:0,-5.11751,-54.8687	0/0:28:28,0:28:964:0:0:0,-8.42884,-87.0686	0/0:11:11,0:11:374:0:0:0,-3.31133,-33.9866	0/1:9:8,1:8:284:1:36:-0.883903,0,-23.1943	0/1:20:13,7:13:448:7:252:-16.8207,0,-34.6284	0/0:306:306,0:306:10632:0:0:0,-92.1152,-956.809	0/1:406:240,164:240:8226:164:5869:-405.131,0,-618.176	0/1:170:86,84:86:3048:84:3003:-218.077,0,-223.354	0/1:15:4,8:4:129:8:288:-22.2708,0,-7.9826	0/0:261:261,0:261:8891:0:0:0,-78.5688,-799.161	0/0:82:82,0:82:2886:0:0:0,-24.6845,-259.976	0/0:194:193,0:193:6684:0:0:0,-58.0988,-601.322	0/0:126:125,0:125:4410:0:0:0,-37.6287,-396.702	0/1:165:94,71:94:3292:71:2533:-177.618,0,-246.687	0/0:98:98,0:98:3361:0:0:0,-29.5009,-302.5	0/1:284:141,143:141:4948:143:5140:-375.98,0,-359.985	0/0:248:247,1:247:8551:1:36:0,-71.0623,-766.001	0/0:147:147,0:147:4973:0:0:0,-44.2514,-447.733	0/0:154:153,1:153:5233:1:36:0,-42.7654,-467.332	0/0:271:271,0:271:9235:0:0:0,-81.5791,-830.84	0/1:43:32,11:32:1106:11:396:-22.9874,0,-86.9003	0/0:180:180,0:180:6130:0:0:0,-54.1854,-551.499	0/0:38:38,0:38:1287:0:0:0,-11.4391,-116.04	0/0:29:29,0:29:980:0:0:0,-8.72987,-88.5016	0/1:346:173,173:173:5826:173:6200:-452.108,0,-420.308	0/1:95:46,49:46:1586:49:1745:-128.278,0,-114.426	0/1:24:9,15:9:320:15:536:-41.2656,0,-21.9178	0/0:16:16,0:16:535:0:0:0,-4.81648,-48.466	0/0:80:80,0:80:2779:0:0:0,-24.0824,-250.35	0/1:257:158,99:158:5531:99:3543:-240.827,0,-420.523	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7793	0/0:276:273,1:273:9283:1:36:0,-79.2334,-831.518	0/1:387:199,188:199:6941:188:6752:-490.111,0,-508.274	0/0:105:98,7:98:3385:7:252:0,-8.61184,-281.874	0/0:118:118,0:118:4043:0:0:0,-35.5215,-364.066	0/1:249:134,115:134:4614:115:4112:-293.994,0,-340.311	0/0:162:161,0:161:5550:0:0:0,-48.4658,-498.907	0/0:34:34,0:34:1196:0:0:0,-10.235,-107.925	0/0:111:111,0:111:3757:0:0:0,-33.4143,-338.295	0/1:147:81,66:81:2806:66:2376:-169.483,0,-208.529	0/0:20:20,0:20:677:0:0:0,-6.0206,-61.2445	0/0:180:180,0:180:6245:0:0:0,-54.1854,-562.097	0/1:92:38,54:38:1281:54:1944:-147.005,0,-87.8876	0/0:197:197,0:197:6697:0:0:0,-59.3029,-602.085	0/0:281:277,2:277:9425:2:72:0,-77.5199,-841.422	0/0:152:150,1:150:5294:1:36:0,-42.2219,-473.01	0/0:156:155,1:155:5384:1:36:0,-43.3675,-481.112	0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4184	0/0:209:209,0:209:7050:0:0:0,-62.9153,-634.586	0/1:265:164,101:164:5656:101:3625:-245.797,0,-429.392	0/1:498:220,278:220:7531:278:9909:-737.467,0,-527.92	0/0:174:173,0:173:6101:0:0:0,-52.0782,-548.904	0/0:102:102,0:102:3584:0:0:0,-30.7051,-322.763	0/1:195:108,87:108:3776:87:3115:-220.434,0,-281.28	0/1:316:156,160:156:5478:160:5730:-419.195,0,-397.644	0/1:100:54,46:54:1916:46:1656:-118.555,0,-142.612	0/0:140:140,0:140:4918:0:0:0,-42.1442,-442.574	0/0:120:120,0:120:4222:0:0:0,-36.1236,-380.115	0/0:59:59,0:59:2071:0:0:0,-17.7608,-186.656	0/1:197:100,97:100:3488:97:3473:-252.667,0,-254.727	0/1:152:61,91:61:2148:91:3244:-245.626,0,-147.828	0/0:103:103,0:103:3595:0:0:0,-31.0061,-323.709	0/0:144:144,0:144:5048:0:0:0,-43.3483,-454.469
chr02	24261152	.	T	A	81729.7	PASS	AB=0.382144;ABP=1738.15;AC=90;AF=0.478723;AN=188;AO=5521;CIGAR=1X;DP=14685;DPB=14685;DPRA=15.5838;EPP=11991.7;EPPR=19887.2;GTI=9;LEN=1;MEANALT=1.03297;MQM=59.5881;MQMR=59.9727;NS=94;NUMALT=1;ODDS=1.04789;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196461;QR=326721;RO=9161;RPL=0;RPP=11991.7;RPPR=19887.2;RPR=5521;RUN=1;SAF=0;SAP=11991.7;SAR=5521;SRF=0;SRP=19895.9;SRR=9161;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:20,33:20:716:33:1176:-90.1816,0,-48.8131	0/1:138:57,81:57:2044:81:2894:-219.133,0,-142.69	0/1:124:68,56:68:2440:56:1969:-139.433,0,-182.527	0/1:527:477,50:477:17026:50:1796:-3.23274,0,-1372.82	0/1:109:86,23:86:3080:23:824:-41.671,0,-244.616	0/1:115:90,25:90:3211:25:870:-43.9808,0,-254.594	0/1:222:113,109:113:3994:109:3871:-281.468,0,-292.822	0/1:152:80,72:80:2849:72:2537:-182.797,0,-210.89	0/1:147:46,101:46:1644:101:3540:-274.219,0,-103.997	0/1:132:55,77:55:1960:77:2743:-207.238,0,-136.94	0/1:112:30,82:30:1072:82:2926:-229.843,0,-63.0771	0/1:140:55,85:55:1968:85:3014:-229.322,0,-135.25	0/1:168:60,108:60:2144:108:3861:-297.087,0,-142.655	0/1:174:131,43:131:4685:43:1513:-84.0749,0,-368.155	0/1:150:116,34:116:4133:34:1224:-65.3079,0,-327	0/1:137:105,32:105:3737:32:1144:-62.0284,0,-295.29	0/1:138:59,79:59:2111:79:2805:-211.111,0,-148.716	0/1:133:112,21:112:4008:21:743:-27.1563,0,-320.872	0/1:76:39,37:39:1379:37:1300:-93.7149,0,-101.53	0/1:428:362,66:362:12880:66:2332:-81.2863,0,-1030.15	0/1:259:224,35:224:8036:35:1247:-34.5499,0,-645.291	0/1:122:78,43:78:2765:43:1535:-101.657,0,-212.307	0/1:98:40,58:40:1440:58:2045:-154.809,0,-100.397	0/1:170:137,33:137:4900:33:1184:-55.684,0,-389.977	0/1:126:50,76:50:1785:76:2693:-204.661,0,-123.001	0/1:341:172,169:172:6115:169:6039:-440.859,0,-447.791	0/1:271:136,135:136:4868:135:4818:-351.875,0,-356.694	0/1:80:25,55:25:900:55:1959:-152.493,0,-57.2386	0/1:390:218,172:218:7812:172:6091:-430.817,0,-585.689	0/1:134:68,66:68:2423:66:2334:-169.958,0,-177.959	0/1:234:195,38:195:6924:38:1352:-51.4777,0,-552.727	0/1:16:9,7:9:316:7:252:-18.2125,0,-23.9624	0/1:15:6,9:6:208:9:324:-24.9904,0,-14.5436	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:409:160,249:160:5694:249:8861:-674.288,0,-389.457	0/1:309:272,37:272:9699:37:1311:-25.268,0,-779.842	0/1:194:149,45:149:5348:45:1601:-85.9679,0,-423.051	0/1:15:11,4:11:384:4:144:-8.79345,0,-30.3792	0/1:198:101,97:101:3585:97:3455:-251.406,0,-263.254	0/1:75:33,42:33:1180:42:1508:-113.428,0,-83.9308	0/1:162:88,74:88:3137:74:2626:-187.744,0,-233.788	0/1:140:45,95:45:1608:95:3363:-260.703,0,-102.866	0/1:162:117,45:117:4164:45:1607:-96.1502,0,-326.176	0/1:166:65,101:65:2320:101:3628:-276.747,0,-159.09	0/1:201:161,40:161:5697:40:1413:-66.9585,0,-452.343	0/1:214:101,113:101:3620:113:3965:-292.224,0,-261.585	0/1:211:112,99:112:3974:99:3534:-254.728,0,-294.333	0/1:119:46,73:46:1640:73:2616:-199.857,0,-112.066	0/1:228:118,110:118:4177:110:3933:-285.512,0,-307.478	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:160:90,70:90:3212:70:2472:-174.533,0,-241.139	0/1:59:35,24:35:1236:24:852:-58.8674,0,-93.7807	0/1:13:5,8:5:180:8:288:-22.3096,0,-12.6387	0/0:272:247,25:247:8781:25:888:0,-1.65035,-710.048	0/1:121:93,28:93:3317:28:996:-53.5279,0,-262.323	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:18:11,7:11:396:7:248:-17.2447,0,-30.5642	0/1:99:40,59:40:1432:59:2099:-159.346,0,-99.3756	0/1:324:256,68:256:9156:68:2401:-118.804,0,-726.394	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:231:114,117:114:4096:117:4179:-306.477,0,-299.286	0/1:293:254,39:254:9107:39:1396:-37.735,0,-731.4	0/1:73:43,30:43:1532:30:1063:-74.0038,0,-116.198	0/1:79:44,35:44:1549:35:1252:-89.1839,0,-115.918	0/1:231:195,36:195:6949:36:1292:-47.0435,0,-555.937	0/1:126:67,59:67:2380:59:2105:-151.785,0,-176.526	0/1:52:15,37:15:536:37:1328:-104.136,0,-32.9213	0/1:101:58,43:58:2071:43:1544:-108.816,0,-156.256	0/1:216:152,64:152:5425:64:2296:-141.874,0,-423.34	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/1:202:93,109:93:3316:109:3912:-290.479,0,-237.846	0/1:156:117,39:117:4155:39:1384:-77.8976,0,-327.014	0/1:163:81,82:81:2893:82:2932:-215.02,0,-211.537	0/1:171:81,90:81:2860:90:3175:-234.484,0,-206.159	0/1:101:44,57:44:1560:57:2034:-152.911,0,-110.288	0/1:74:35,39:35:1256:39:1400:-104.015,0,-91.0691	0/1:21:8,13:8:284:13:464:-35.743,0,-19.5817	0/1:76:45,30:45:1620:30:1072:-73.8509,0,-123.153	0/1:250:210,40:210:7472:40:1424:-53.1699,0,-597.258	0/1:361:308,53:308:11002:53:1887:-61.4303,0,-881.392	0/1:219:101,118:101:3569:118:4220:-314.028,0,-255.492	0/1:110:38,72:38:1351:72:2572:-198.616,0,-88.7763	0/1:193:158,35:158:5646:35:1226:-52.5358,0,-450.161	0/1:359:290,69:290:10359:69:2437:-111.496,0,-824.162	0/1:111:82,29:82:2924:29:1027:-59.3115,0,-229.981	0/1:153:52,101:52:1868:101:3607:-278.708,0,-122.342	0/1:131:42,89:42:1504:89:3193:-247.998,0,-96.2197	0/1:156:47,109:47:1684:109:3887:-303.051,0,-104.882	0/1:245:193,52:193:6908:52:1855:-93.4547,0,-548.035	0/1:174:146,28:146:5164:28:975:-35.6735,0,-412.526	0/1:67:37,30:37:1324:30:1071:-76.5326,0,-99.2931	0/1:216:80,136:80:2851:136:4844:-370.991,0,-191.806
chr02	24261164	.	G	T	78040.6	PASS	AB=0.376658;ABP=1875.7;AC=91;AF=0.484043;AN=188;AO=5338;CIGAR=1X;DP=14205;DPB=14205;DPRA=14.1578;EPP=11594.3;EPPR=19224.9;GTI=11;LEN=1;MEANALT=1.10989;MQM=59.556;MQMR=59.9901;NS=94;NUMALT=1;ODDS=1.01527;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188737;QR=305151;RO=8856;RPL=0;RPP=11594.3;RPPR=19224.9;RPR=5338;RUN=1;SAF=0;SAP=11594.3;SAR=5338;SRF=0;SRP=19233.6;SRR=8856;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:17,29:17:563:29:1013:-77.6294,0,-37.1327	0/1:136:56,80:56:1936:80:2860:-216.671,0,-133.572	0/1:129:72,57:72:2463:57:2026:-142.39,0,-183.088	0/1:507:459,48:459:15844:48:1708:-1.35597,0,-1273.07	0/1:108:86,22:86:2894:22:773:-37.3782,0,-228.181	0/1:104:83,21:83:2894:21:718:-33.6093,0,-229.388	0/1:219:114,105:114:3897:105:3719:-268.705,0,-284.997	0/1:148:79,69:79:2772:69:2425:-173.923,0,-205.17	0/1:145:46,99:46:1621:99:3515:-272.368,0,-102.527	0/1:126:52,74:52:1801:74:2625:-198.53,0,-124.438	0/1:101:23,77:23:778:77:2725:-215.07,0,-39.9063	0/1:133:53,80:53:1765:80:2829:-214.79,0,-119.087	0/1:163:57,106:57:1935:106:3732:-286.991,0,-125.352	0/1:170:127,43:127:4310:43:1497:-82.9039,0,-336.915	0/1:144:111,33:111:3829:33:1168:-62.0776,0,-301.463	0/1:132:100,32:100:3434:32:1135:-62.7221,0,-269.541	0/1:137:58,79:58:1949:79:2769:-207.981,0,-134.439	0/1:129:109,20:109:3654:20:712:-25.5738,0,-290.238	0/1:73:37,35:37:1268:35:1215:-86.9999,0,-92.381	0/1:414:349,65:349:12162:65:2304:-82.9558,0,-969.828	0/1:257:223,34:223:7715:34:1196:-30.5671,0,-617.035	0/1:117:72,45:72:2526:45:1604:-109.426,0,-192.37	0/1:93:39,54:39:1387:54:1916:-144.71,0,-97.1324	0/1:167:133,34:133:4553:34:1198:-57.8382,0,-359.67	0/1:124:50,74:50:1713:74:2651:-201.484,0,-117.122	0/1:328:166,162:166:5835:162:5761:-419.816,0,-426.532	0/1:264:131,132:131:4536:132:4654:-339.456,0,-328.883	0/1:81:27,54:27:930:54:1923:-148.958,0,-59.6273	0/1:375:206,168:206:7254:168:5958:-423.237,0,-539.96	0/1:131:68,63:68:2366:63:2217:-160.327,0,-173.759	0/1:226:189,37:189:6621:37:1313:-50.4351,0,-527.946	0/1:14:7,7:7:243:7:252:-18.8145,0,-17.9931	0/1:15:4,11:4:140:11:392:-31.1046,0,-8.42913	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:8:8,0:8:271:0:0:0,-2.40824,-24.7194	0/1:13:9,4:9:302:4:144:-9.40023,0,-23.5917	0/1:393:151,242:151:5091:242:8560:-651.979,0,-340.043	0/1:307:271,36:271:9382:36:1249:-20.2929,0,-751.953	0/1:190:145,45:145:4955:45:1595:-86.6251,0,-388.915	0/1:15:11,4:11:348:4:144:-8.79345,0,-27.1094	0/1:198:99,98:99:3434:98:3470:-252.812,0,-249.72	0/1:73:34,39:34:1162:39:1380:-102.514,0,-82.9041	0/1:155:84,71:84:2895:71:2504:-178.884,0,-214.125	0/1:133:41,91:41:1408:91:3214:-249.366,0,-86.9171	0/1:158:114,44:114:3948:44:1549:-92.1374,0,-307.955	0/1:156:60,96:60:2067:96:3432:-262.128,0,-139.336	0/1:189:153,36:153:5342:36:1288:-59.3289,0,-424.022	0/1:204:101,103:101:3472:103:3625:-264.713,0,-251.282	0/1:204:106,98:106:3722:98:3454:-249.415,0,-273.774	0/1:111:44,67:44:1531:67:2380:-181.032,0,-104.664	0/1:218:111,107:111:3871:107:3789:-275.565,0,-282.964	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:158:88,70:88:3078:70:2480:-175.865,0,-229.684	0/1:56:34,22:34:1192:22:779:-53.202,0,-90.7247	0/1:12:5,7:5:176:7:252:-19.3721,0,-12.5727	0/1:266:241,25:241:8346:25:900:-1.23781,0,-671.094	0/1:119:92,27:92:3191:27:952:-50.1703,0,-251.59	0/0:13:13,0:13:452:0:0:0,-3.91339,-41.0111	0/1:17:11,6:11:384:6:212:-14.3064,0,-29.7772	0/1:95:42,53:42:1452:53:1892:-141.929,0,-102.374	0/1:310:241,68:241:8221:68:2416:-124.312,0,-646.553	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:228:117,111:117:4033:111:3862:-279.052,0,-294.529	0/1:289:253,36:253:8785:36:1288:-29.2236,0,-703.654	0/1:72:43,29:43:1520:29:1036:-71.8752,0,-115.419	0/1:77:41,36:41:1395:36:1270:-90.626,0,-102.657	0/1:232:194,38:194:6696:38:1339:-50.9503,0,-532.897	0/1:116:59,57:59:2067:57:2017:-146.882,0,-151.379	0/1:52:16,36:16:544:36:1269:-98.8511,0,-33.6262	0/1:96:55,41:55:1904:41:1441:-101.072,0,-142.737	0/1:204:145,59:145:5025:59:2057:-123.985,0,-390.996	0/1:21:13,8:13:440:8:284:-19.5817,0,-33.6003	0/1:202:92,110:92:3125:110:3875:-287.773,0,-220.667	0/1:153:115,38:115:3984:38:1337:-74.5703,0,-312.698	0/1:163:78,85:78:2661:85:2992:-220.417,0,-190.666	0/1:164:77,87:77:2655:87:3097:-229.576,0,-189.827	0/1:95:41,54:41:1388:54:1904:-143.021,0,-96.6117	0/1:67:31,36:31:1072:36:1286:-95.8694,0,-76.6158	0/1:19:7,12:7:243:12:432:-33.477,0,-16.4879	0/1:72:41,31:41:1383:31:1093:-76.9958,0,-103.082	0/1:236:198,38:198:6839:38:1333:-49.1865,0,-544.474	0/1:359:306,53:306:10542:53:1872:-60.6824,0,-840.652	0/1:212:96,116:96:3281:116:4110:-306.242,0,-231.692	0/1:106:38,67:38:1245:67:2357:-180.417,0,-80.3696	0/1:189:153,35:153:5187:35:1237:-54.6736,0,-410.033	0/1:334:272,62:272:9258:62:2180:-95.9012,0,-732.686	0/1:105:77,28:77:2579:28:996:-58.3304,0,-200.747	0/1:151:49,102:49:1672:102:3617:-280.203,0,-105.305	0/1:129:41,88:41:1416:88:3085:-238.992,0,-88.8997	0/1:150:45,105:45:1549:105:3712:-289.115,0,-94.5397	0/1:237:187,48:187:6401:48:1683:-80.6429,0,-505.098	0/1:164:138,26:138:4684:26:932:-34.8272,0,-372.368	0/1:63:35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chr02	24261196	.	T	C	83811.7	PASS	AB=0.37857;ABP=1904.69;AC=90;AF=0.478723;AN=188;AO=5646;CIGAR=1X;DP=15165;DPB=15165;DPRA=14.6713;EPP=12263.1;EPPR=20666.7;GTI=10;LEN=1;MEANALT=1.03297;MQM=59.5583;MQMR=59.9676;NS=94;NUMALT=1;ODDS=0.756824;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201645;QR=339941;RO=9516;RPL=5646;RPP=12263.1;RPPR=20666.7;RPR=0;RUN=1;SAF=0;SAP=12263.1;SAR=5646;SRF=0;SRP=20666.7;SRR=9516;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:20,35:20:716:35:1230:-94.4433,0,-48.2111	0/1:141:60,81:60:2137:81:2910:-219.671,0,-150.151	0/1:133:73,60:73:2609:60:2147:-152.49,0,-195.019	0/1:552:500,52:500:17825:52:1858:-1.30362,0,-1437.19	0/1:114:91,23:91:3246:23:828:-40.5267,0,-258.041	0/1:118:93,25:93:3314:25:892:-45.0523,0,-262.954	0/1:229:119,110:119:4261:110:3930:-284.852,0,-314.728	0/1:159:84,75:84:2986:75:2646:-190.491,0,-221.106	0/1:153:50,103:50:1792:103:3692:-285.866,0,-115.505	0/1:134:56,78:56:1978:78:2800:-211.835,0,-137.953	0/1:117:31,86:31:1101:86:3076:-241.833,0,-64.1779	0/1:144:59,85:59:2124:85:3060:-232.21,0,-148.079	0/1:174:65,109:65:2321:109:3924:-300.946,0,-156.769	0/1:180:135,45:135:4852:45:1601:-90.18,0,-381.371	0/1:153:118,35:118:4244:35:1256:-67.2831,0,-336.08	0/1:141:109,32:109:3916:32:1140:-60.464,0,-310.18	0/1:145:60,85:60:2152:85:3005:-226.963,0,-150.298	0/1:136:115,21:115:4094:21:756:-27.4271,0,-327.704	0/1:78:41,37:41:1461:37:1298:-93.5989,0,-108.304	0/1:447:378,69:378:13490:69:2470:-87.9705,0,-1079.3	0/1:273:235,38:235:8394:38:1357:-40.2335,0,-673.282	0/1:127:82,45:82:2914:45:1616:-107.492,0,-224.262	0/1:98:42,56:42:1482:56:2008:-151.483,0,-104.17	0/1:176:140,36:140:5013:36:1277:-62.2388,0,-398.334	0/1:130:51,79:51:1832:79:2825:-215.326,0,-126.027	0/1:349:176,173:176:6274:173:6136:-447.243,0,-459.691	0/1:281:142,139:142:5074:139:4954:-361.174,0,-372.211	0/1:83:28,55:28:985:55:1961:-151.769,0,-63.976	0/1:397:219,178:219:7842:178:6352:-452.197,0,-586.277	0/1:138:68,70:68:2418:70:2484:-182.254,0,-176.302	0/1:239:200,39:200:7128:39:1404:-54.708,0,-569.628	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:18:6,12:6:212:12:432:-33.8027,0,-14.0063	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:412:164,248:164:5880:248:8878:-674.851,0,-405.285	0/1:322:284,38:284:10174:38:1351:-24.9527,0,-818.608	0/1:199:154,45:154:5516:45:1620:-86.1687,0,-436.658	0/1:16:12,4:12:417:4:144:-8.49242,0,-33.0437	0/1:208:107,101:107:3798:101:3589:-260.45,0,-279.403	0/1:76:34,42:34:1220:42:1489:-111.415,0,-87.2285	0/1:170:93,76:93:3329:76:2709:-192.742,0,-248.592	0/1:143:46,97:46:1656:97:3488:-271.002,0,-106.281	0/1:173:125,47:125:4492:47:1661:-97.6363,0,-352.31	0/1:169:67,102:67:2408:102:3665:-279.174,0,-166.102	0/1:206:166,40:166:5915:40:1406:-64.8128,0,-470.444	0/1:221:109,111:109:3900:111:3946:-288.372,0,-284.756	0/1:224:117,107:117:4174:107:3809:-275.317,0,-308.409	0/1:122:47,75:47:1688:75:2662:-203.089,0,-115.481	0/1:233:121,112:121:4329:112:3986:-288.762,0,-319.644	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:164:93,71:93:3314:71:2552:-180.524,0,-249.107	0/1:60:36,24:36:1281:24:864:-59.6486,0,-97.5295	0/1:13:5,8:5:180:8:284:-21.9455,0,-12.6387	0/0:283:258,25:258:9186:25:900:0,-3.8797,-745.326	0/1:129:100,29:100:3584:29:1013:-52.6456,0,-283.927	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:18:11,7:11:392:7:252:-17.6095,0,-30.2015	0/1:105:44,61:44:1580:61:2175:-164.397,0,-110.883	0/1:329:259,70:259:9263:70:2485:-124.853,0,-734.595	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:244:122,122:122:4305:122:4377:-320.374,0,-314.172	0/1:304:264,40:264:9476:40:1436:-38.0222,0,-761.276	0/1:75:44,31:44:1565:31:1104:-77.0888,0,-118.562	0/1:82:45,37:45:1590:37:1320:-93.347,0,-118.702	0/1:246:209,37:209:7422:37:1319:-44.9401,0,-593.966	0/1:131:72,59:72:2584:59:2124:-151.991,0,-193.374	0/1:53:16,37:16:576:37:1332:-104.223,0,-36.2204	0/1:103:59,44:59:2105:44:1557:-109.386,0,-158.711	0/1:220:157,63:157:5648:63:2264:-137.791,0,-442.193	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.774	0/1:210:98,112:98:3475:112:3986:-295.654,0,-249.74	0/1:160:122,38:122:4376:38:1356:-74.1757,0,-345.222	0/1:170:82,88:82:2952:88:3124:-230.184,0,-214.737	0/1:172:82,90:82:2917:90:3225:-238.681,0,-210.987	0/1:104:47,57:47:1688:57:2033:-151.913,0,-120.9	0/1:75:34,41:34:1220:41:1468:-109.202,0,-87.5296	0/1:22:8,14:8:273:14:500:-38.6725,0,-18.2775	0/1:79:47,32:47:1639:32:1148:-79.8439,0,-124.011	0/1:255:214,41:214:7587:41:1452:-54.1711,0,-606.025	0/1:375:320,55:320:11427:55:1970:-64.6832,0,-915.406	0/1:225:106,119:106:3789:119:4265:-316.26,0,-273.475	0/1:114:41,73:41:1476:73:2609:-200.739,0,-98.8188	0/1:199:164,35:164:5885:35:1256:-53.3517,0,-469.851	0/1:364:295,69:295:10540:69:2480:-113.857,0,-838.935	0/1:112:84,28:84:3008:28:1004:-56.9442,0,-237.236	0/1:155:52,103:52:1872:103:3700:-286.453,0,-122.099	0/1:133:41,92:41:1476:92:3300:-257.132,0,-93.0992	0/1:162:51,111:51:1832:111:3988:-310.328,0,-116.389	0/1:251:200,51:200:7162:51:1817:-88.2289,0,-569.074	0/1:182:154,28:154:5540:28:981:-33.809,0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chr02	24325791	.	G	C	16823.9	PASS	AB=0.288778;ABP=1322.12;AC=39;AF=0.207447;AN=188;AO=1028;CIGAR=1X;DP=9384;DPB=9384;DPRA=0.82369;EPP=25.8572;EPPR=18139.1;GTI=10;LEN=1;MEANALT=1.04082;MQM=60;MQMR=59.996;NS=94;NUMALT=1;ODDS=0.475017;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36422;QR=296866;RO=8352;RPL=1028;RPP=2235.28;RPPR=18139.1;RPR=0;RUN=1;SAF=462;SAP=25.8572;SAR=566;SRF=8352;SRP=18139.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:83:82,1:82:2900:1:36:0,-21.3872,-257.637	0/1:148:126,22:126:4500:22:788:-26.6924,0,-360.617	0/0:368:368,0:368:13072:0:0:0,-110.779,-1176.3	0/1:33:23,10:23:794:10:356:-22.4473,0,-61.8393	0/1:44:36,8:36:1271:8:273:-11.6549,0,-101.447	0/1:153:138,15:138:4895:15:536:-2.51723,0,-394.646	0/1:124:106,18:106:3751:18:648:-21.3242,0,-300.466	0/0:211:211,0:211:7488:0:0:0,-63.5173,-673.967	0/0:150:150,0:150:5356:0:0:0,-45.1545,-482.174	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/1:104:39,65:39:1383:65:2279:-174.063,0,-93.4609	0/0:63:63,0:63:2197:0:0:0,-18.9649,-197.992	0/1:84:35,49:35:1252:49:1749:-132.406,0,-87.6986	0/1:80:33,47:33:1171:47:1672:-126.685,0,-81.6143	0/1:72:22,50:22:788:50:1758:-136.828,0,-49.5706	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/0:201:188,13:188:6740:13:464:0,-18.4095,-564.575	0/0:216:216,0:216:7639:0:0:0,-65.0225,-687.554	0/0:107:107,0:107:3809:0:0:0,-32.2102,-343.008	0/1:106:84,22:84:3004:22:788:-39.3356,0,-238.683	0/0:177:177,0:177:6298:0:0:0,-53.2823,-566.907	0/0:109:109,0:109:3848:0:0:0,-32.8123,-346.516	0/0:295:295,0:295:10474:0:0:0,-88.8038,-942.584	0/0:221:220,0:220:7815:0:0:0,-66.2266,-703.024	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:197:194,3:194:6926:3:108:0,-49.2277,-613.333	0/1:102:90,12:90:3212:12:417:-7.15516,0,-258.598	0/1:139:115,24:115:4086:24:843:-34.3448,0,-326.085	0/1:8:7,1:7:252:1:32:-0.791073,0,-20.6207	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:147:65,82:65:2312:82:2927:-219.413,0,-164.09	0/0:62:61,0:61:2151:0:0:0,-18.3628,-193.495	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:272:272,0:272:9635:0:0:0,-81.8802,-867.11	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/1:141:121,20:121:4306:20:716:-22.3225,0,-345.273	0/1:70:35,35:35:1240:35:1252:-91.913,0,-90.8324	0/1:58:21,37:21:743:37:1324:-102.002,0,-49.7336	0/0:135:135,0:135:4820:0:0:0,-40.639,-433.957	0/1:101:89,12:89:3136:12:432:-8.81717,0,-252.063	0/1:134:107,27:107:3820:27:943:-44.8452,0,-303.66	0/1:45:37,8:37:1296:8:271:-11.1731,0,-103.392	0/0:142:142,0:142:5067:0:0:0,-42.7463,-456.173	0/1:81:72,9:72:2572:9:316:-4.39543,0,-207.347	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:149:149,0:149:5277:0:0:0,-44.8535,-475.068	0/0:172:172,0:172:6110:0:0:0,-51.7772,-550.003	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:122:106,16:106:3771:16:568:-14.7262,0,-302.865	0/0:86:85,1:85:3011:1:36:0,-22.2903,-267.625	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:15:14,1:14:500:1:32:0,-1.31614,-42.1369	0/0:68:63,5:63:2248:5:180:0,-3.91797,-186.031	0/0:70:69,1:69:2462:1:36:0,-17.4738,-218.235	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:252:252,0:252:8941:0:0:0,-75.8596,-804.676	0/1:161:137,24:137:4824:24:841:-27.5405,0,-385.85	0/1:54:47,7:47:1676:7:252:-6.77334,0,-134.872	0/0:154:154,0:154:5468:0:0:0,-46.3586,-492.248	0/1:172:154,17:154:5491:17:595:-2.04128,0,-442.483	0/1:89:70,19:70:2486:19:680:-34.7375,0,-197.201	0/1:36:18,18:18:644:18:629:-46.0967,0,-47.4535	0/1:86:76,10:76:2711:10:360:-6.85572,0,-218.345	0/1:41:14,27:14:504:27:956:-74.0135,0,-33.3559	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:117:117,0:117:4147:0:0:0,-35.2205,-373.414	0/1:56:44,12:44:1563:12:417:-21.0025,0,-124.103	0/0:260:260,0:260:9240:0:0:0,-78.2678,-831.573	0/0:250:250,0:250:8907:0:0:0,-75.2575,-801.616	0/1:31:22,9:22:788:9:324:-20.1739,0,-61.9129	0/0:118:111,6:111:3944:6:212:0,-16.1546,-335.726	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/0:199:199,0:199:7086:0:0:0,-59.905,-637.801	0/0:134:121,13:121:4259:13:444:0,-0.0539502,-343.209	0/1:208:175,33:175:6263:33:1157:-41.8202,0,-501.15	0/0:38:38,0:38:1328:0:0:0,-11.4391,-119.817	0/0:61:60,1:60:2160:1:36:0,-14.7646,-191.068	0/0:54:54,0:54:1907:0:0:0,-16.2556,-171.907	0/1:127:71,56:71:2528:56:1987:-140.873,0,-189.541	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/1:67:23,44:23:824:44:1576:-121.963,0,-54.3143	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.282	0/1:37:5,32:5:180:32:1117:-89.6973,0,-5.41395	0/1:53:16,37:16:568:37:1307:-101.976,0,-35.4973	0/1:66:27,39:27:964:39:1396:-106.071,0,-67.2088	0/0:258:258,0:258:9189:0:0:0,-77.6657,-826.984	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919
chr02	24354842	.	GTTA	TTTG,GTTG	41786.8	PASS	AB=0.471304,0.525565;ABP=23.5732,19.3315;AC=135,53;AF=0.718085,0.281915;AN=188;AO=3860,1529;CIGAR=1X2M1X,3M1X;DP=5409;DPB=5409.25;DPRA=13.6839,1.10056;EPP=8384.89,3323.19;EPPR=0;GTI=10;LEN=4,1;MEANALT=1.76923,2.16667;MQM=21.3697,19.0536;MQMR=0;NS=94;NUMALT=2;ODDS=799.669;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=135999,53220;QR=0;RO=0;RPL=0,0;RPP=8384.89,3323.19;RPPR=0;RPR=3860,1529;RUN=1,1;SAF=0,0;SAP=8384.89,3323.19;SAR=3860,1529;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:464,0:-21.1516,-3.91339,0,-21.1516,-3.91339,-21.1516	1/1:21:0,21,0:0:0:21,0:747,0:-34.1427,-6.32163,0,-34.1427,-6.32163,-34.1427	1/2:75:0,28,47:0:0:28,47:976,1644:-83.6352,-45.7759,-37.3471,-38.0271,0,-23.8786	1/1:161:0,160,0:0:0:160,0:5619,0:-316.072,-48.1648,0,-316.072,-48.1648,-316.072	1/2:24:0,7,17:0:0:7,17:248,604:-33.5178,-23.1018,-20.9946,-10.6102,0,-5.4927	1/2:20:0,8,12:0:0:8,12:286,415:-21.7516,-11.2341,-8.82591,-10.6795,0,-7.06719	1/2:58:0,33,25:0:0:33,25:1152,862:-98.5082,-40.7224,-30.7885,-58.0055,0,-50.4797	1/2:37:0,13,24:0:0:13,24:454,825:-43.424,-25.4364,-21.523,-18.1618,0,-10.9371	1/2:73:0,38,33:0:0:38,33:1349,1156:-81.9524,-32.0947,-20.6555,-49.8091,0,-39.8751	1/1:75:0,74,0:0:0:74,0:2634,0:-145.81,-22.2762,0,-145.81,-22.2762,-145.81	1/1:36:0,36,0:0:0:36,0:1285,0:-71.0673,-10.8371,0,-71.0673,-10.8371,-71.0673	1/2:96:0,46,50:0:0:46,50:1618,1703:-113.239,-49.315,-35.4676,-64.0901,0,-49.0386	1/1:74:0,73,0:0:0:73,0:2574,0:-119.16,-21.9752,0,-119.16,-21.9752,-119.16	1/2:38:0,20,17:0:0:20,17:697,583:-52.4996,-21.2337,-15.2131,-31.2742,0,-26.1567	1/2:51:0,19,32:0:0:19,32:673,1117:-82.6066,-52.0818,-46.3623,-30.7373,0,-21.1044	1/2:59:0,32,27:0:0:32,27:1133,943:-83.8299,-36.1447,-26.5117,-47.8747,0,-39.7469	1/1:16:0,16,0:0:0:16,0:563,0:-27.1406,-4.81648,0,-27.1406,-4.81648,-27.1406	1/1:24:0,24,0:0:0:24,0:849,0:-38.705,-7.22472,0,-38.705,-7.22472,-38.705	1/1:16:0,16,0:0:0:16,0:573,0:-29.6727,-4.81648,0,-29.6727,-4.81648,-29.6727	1/2:47:0,19,28:0:0:19,28:678,976:-77.9595,-46.3565,-40.6369,-31.8205,0,-23.3917	1/1:116:0,116,0:0:0:116,0:4086,0:-207.948,-34.9195,0,-207.948,-34.9195,-207.948	1/1:28:0,28,0:0:0:28,0:971,0:-60.9206,-8.42884,0,-60.9206,-8.42884,-60.9206	1/2:80:0,34,44:0:0:34,44:1198,1541:-127.113,-70.3761,-60.1411,-56.734,0,-43.4887	1/1:47:0,47,0:0:0:47,0:1650,0:-86.6019,-14.1484,0,-86.6019,-14.1484,-86.6019	1/1:18:0,18,0:0:0:18,0:624,0:-33.0014,-5.41854,0,-33.0014,-5.41854,-33.0014	1/1:142:0,138,2:0:0:138,2:4869,68:-293.506,-41.5421,0,-289.785,-37.8387,-289.183	1/1:115:0,115,0:0:0:115,0:4049,0:-205.074,-34.6185,0,-205.074,-34.6185,-205.074	1/1:29:0,29,0:0:0:29,0:1024,0:-51.309,-8.72987,0,-51.309,-8.72987,-51.309	1/2:116:0,58,58:0:0:58,58:2010,2044:-207.236,-105.09,-87.6298,-102.378,0,-84.9186	1/2:87:0,36,51:0:0:36,51:1264,1816:-124.386,-68.9522,-58.1151,-55.6295,0,-40.277	1/2:64:0,32,32:0:0:32,32:1128,1126:-104.59,-52.0895,-42.4566,-52.7154,0,-43.0825	2/2:4:0,0,4:0:0:0,4:0,144:-7.61579,-7.61579,-7.61579,-1.20412,-1.20412,0	1/1:2:0,2,0:0:0:2,0:70,0:-3.77392,-0.60206,0,-3.77392,-0.60206,-3.77392	1/1:2:0,2,0:0:0:2,0:66,0:-3.38876,-0.60206,0,-3.38876,-0.60206,-3.38876	1/1:1:0,1,0:0:0:1,0:35,0:-1.79155,-0.30103,0,-1.79155,-0.30103,-1.79155	2/2:8:0,0,8:0:0:0,8:0,288:-10.2009,-10.2009,-10.2009,-2.40824,-2.40824,0	1/2:145:0,69,76:0:0:69,76:2445,2556:-256.481,-131.627,-110.856,-125.084,0,-102.205	1/2:69:0,30,39:0:0:30,39:1042,1383:-100.182,-53.6219,-44.591,-46.7568,0,-35.0167	1/1:37:0,36,0:0:0:36,0:1249,0:-60.1201,-10.8371,0,-60.1201,-10.8371,-60.1201	1/1:1:0,1,0:0:0:1,0:36,0:-3.24616,-0.30103,0,-3.24616,-0.30103,-3.24616	1/1:57:0,57,0:0:0:57,0:2024,0:-103.674,-17.1587,0,-103.674,-17.1587,-103.674	1/1:28:0,27,1:0:0:27,1:966,36:-49.3441,-8.12781,0,-47.9433,-6.53731,-47.6423	1/2:88:0,41,47:0:0:41,47:1447,1662:-127.45,-63.9474,-51.6052,-63.6982,0,-49.5498	1/2:36:0,19,17:0:0:19,17:681,608:-59.8169,-27.8636,-22.1441,-32.1703,0,-27.0528	1/2:48:0,28,20:0:0:28,20:995,675:-78.4609,-31.6242,-23.1954,-47.0494,0,-41.0288	1/1:54:0,54,0:0:0:54,0:1895,0:-111.894,-16.2556,0,-111.894,-16.2556,-111.894	1/2:63:0,17,46:0:0:17,46:609,1600:-67.4701,-43.9448,-38.8273,-23.6994,0,-9.85206	1/2:89:0,35,54:0:0:35,54:1237,1882:-141.039,-83.6285,-73.0925,-57.622,0,-41.3664	1/2:53:0,25,28:0:0:25,28:881,996:-89.2584,-45.4957,-37.9699,-43.9837,0,-35.5549	1/1:122:0,122,0:0:0:122,0:4333,0:-241.741,-36.7257,0,-241.741,-36.7257,-241.741	1/2:102:0,52,50:0:0:52,50:1842,1763:-182.596,-88.3978,-72.7442,-94.4305,0,-79.379	1/2:5:0,4,1:0:0:4,1:142,36:-7.99484,-1.88212,-0.678001,-6.32809,0,-6.02706	1/1:57:0,57,0:0:0:57,0:2006,0:-93.3447,-17.1587,0,-93.3447,-17.1587,-93.3447	1/1:54:0,54,0:0:0:54,0:1882,0:-114.055,-16.2556,0,-114.055,-16.2556,-114.055	1/2:8:0,3,5:0:0:3,5:93,180:-9.10964,-4.92278,-4.01969,-4.35666,0,-2.85151	1/2:80:0,32,48:0:0:32,48:1124,1669:-111.635,-63.0957,-53.4627,-48.7321,0,-34.2826	1/1:26:0,26,0:0:0:26,0:908,0:-50.7184,-7.82678,0,-50.7184,-7.82678,-50.7184	2/2:1:0,0,1:0:0:0,1:0,32:-2.33634,-2.33634,-2.33634,-0.30103,-0.30103,0	1/2:7:0,2,5:0:0:2,5:69,172:-12.9927,-9.34467,-8.74261,-3.88406,0,-2.37891	1/2:42:0,21,20:0:0:21,20:732,712:-56.0557,-26.2744,-19.9527,-29.7416,0,-23.721	1/1:101:0,99,1:0:0:99,1:3509,36:-196.163,-29.802,0,-194.499,-28.1481,-194.198	1/1:4:0,4,0:0:0:4,0:144,0:-8.07766,-1.20412,0,-8.07766,-1.20412,-8.07766	1/1:180:0,180,0:0:0:180,0:6406,0:-378.861,-54.1854,0,-378.861,-54.1854,-378.861	1/2:111:0,69,42:0:0:69,42:2446,1453:-179.44,-66.3333,-45.5622,-113.318,0,-100.675	1/2:57:0,35,21:0:0:35,21:1246,731:-79.5135,-28.491,-17.955,-50.9811,0,-44.6595	1/1:51:0,51,0:0:0:51,0:1828,0:-100.222,-15.3525,0,-100.222,-15.3525,-100.222	1/2:89:0,36,52:0:0:36,52:1254,1821:-139.039,-80.6058,-69.7688,-58.3808,0,-42.7272	1/2:70:0,20,50:0:0:20,50:696,1740:-115.409,-81.2927,-75.2721,-34.337,0,-19.2855	1/2:33:0,13,20:0:0:13,20:438,693:-45.9522,-27.2077,-23.2943,-18.9342,0,-12.9136	1/2:37:0,22,15:0:0:22,15:757,524:-44.7786,-14.3844,-7.76178,-30.5525,0,-26.037	1/2:34:0,14,20:0:0:14,20:489,694:-60.8324,-35.7256,-31.5111,-25.3387,0,-19.3181	1/1:21:0,21,0:0:0:21,0:727,0:-43.7917,-6.32163,0,-43.7917,-6.32163,-43.7917	1/1:76:0,75,0:0:0:75,0:2632,0:-125.239,-22.5773,0,-125.239,-22.5773,-125.239	1/2:68:0,32,36:0:0:32,36:1125,1271:-78.234,-35.8326,-26.1996,-42.5646,0,-31.7275	1/1:88:0,88,0:0:0:88,0:3093,0:-160.208,-26.4906,0,-160.208,-26.4906,-160.208	1/1:160:0,160,0:0:0:160,0:5655,0:-313.835,-48.1648,0,-313.835,-48.1648,-313.835	1/2:52:0,13,39:0:0:13,39:446,1375:-56.7445,-38.2102,-34.2968,-18.7136,0,-6.97348	1/2:68:0,32,35:0:0:32,35:1137,1214:-74.7334,-32.9267,-23.2937,-41.6893,0,-31.1533	1/1:9:0,9,0:0:0:9,0:307,0:-14.6501,-2.70927,0,-14.6501,-2.70927,-14.6501	1/1:46:0,46,0:0:0:46,0:1633,0:-83.3922,-13.8474,0,-83.3922,-13.8474,-83.3922	1/2:57:0,29,28:0:0:29,28:1023,962:-64.8124,-26.7777,-18.0479,-38.1934,0,-29.7646	1/2:106:0,62,44:0:0:62,44:2151,1500:-175.991,-72.6463,-53.9824,-103.562,0,-90.3165	1/1:51:0,51,0:0:0:51,0:1805,0:-99.5725,-15.3525,0,-99.5725,-15.3525,-99.5725	1/1:54:0,53,0:0:0:53,0:1858,0:-103.367,-15.9546,0,-103.367,-15.9546,-103.367	1/1:31:0,31,0:0:0:31,0:1093,0:-59.6994,-9.33193,0,-59.6994,-9.33193,-59.6994	1/2:112:0,62,50:0:0:62,50:2149,1717:-180.177,-80.3957,-61.7319,-99.9928,0,-84.9413	1/2:18:0,9,9:0:0:9,9:316,307:-23.0054,-8.81208,-6.10281,-14.3677,0,-11.6585	1/2:56:0,31,25:0:0:31,25:1090,849:-64.9075,-23.9854,-14.6534,-41.0797,0,-33.5539	1/1:65:0,64,0:0:0:64,0:2250,0:-102.98,-19.2659,0,-102.98,-19.2659,-102.98	1/2:29:0,21,8:0:0:21,8:737,269:-42.5652,-10.9449,-4.62332,-31.808,0,-29.3998	1/2:67:0,39,28:0:0:39,28:1379,955:-96.3119,-37.5264,-25.7863,-58.9752,0,-50.5464	1/2:51:0,15,36:0:0:15,36:528,1256:-82.7803,-58.077,-53.5615,-24.9185,0,-14.0814	1/1:138:0,138,0:0:0:138,0:4873,0:-276.092,-41.5421,0,-276.092,-41.5421,-276.092	1/1:74:0,72,1:0:0:72,1:2525,36:-138.725,-21.6742,0,-137.769,-20.7568,-137.468
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chr02	24445730	.	G	A	41251.2	PASS	AB=0.512497;ABP=9.46907;AC=53;AF=0.281915;AN=188;AO=2449;CIGAR=1X;DP=8019;DPB=8019;DPRA=1.34102;EPP=5320.95;EPPR=12091.6;GTI=0;LEN=1;MEANALT=1.05;MQM=54.5312;MQMR=59.9409;NS=94;NUMALT=1;ODDS=0.478968;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87576;QR=199312;RO=5567;RPL=2449;RPP=5320.95;RPPR=12091.6;RPR=0;RUN=1;SAF=0;SAP=5320.95;SAR=2449;SRF=0;SRP=12091.6;SRR=5567;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1746	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.733	0/1:96:49,47:49:1749:47:1656:-120.062,0,-128.793	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.631	0/1:30:17,13:17:608:13:464:-32.8846,0,-46.0211	0/1:29:14,15:14:504:15:540:-40.1563,0,-36.9682	0/1:85:41,44:41:1472:44:1553:-114.137,0,-107.189	0/1:102:48,54:48:1716:54:1931:-142.856,0,-124.021	0/1:20:9,11:9:324:11:392:-29.5317,0,-23.4853	0/1:69:30,39:30:1076:39:1396:-104.993,0,-76.3818	0/0:204:204,0:204:7285:0:0:0,-61.4101,-655.697	0/1:112:59,53:59:2107:53:1904:-137.191,0,-156.183	0/0:99:99,0:99:3521:0:0:0,-29.802,-317.1	0/1:167:82,84:82:2948:84:3012:-219.55,0,-215.215	0/1:85:53,32:53:1900:32:1140:-77.2325,0,-145.69	0/1:86:34,52:34:1200:52:1856:-140.821,0,-82.417	0/0:126:125,1:125:4471:1:36:0,-34.3352,-398.965	0/0:114:113,1:113:4048:1:36:0,-30.7229,-360.912	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.728	0/1:200:85,115:85:3044:115:4105:-307.984,0,-213.977	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.945	0/1:16:7,9:7:252:9:320:-24.3051,0,-18.1837	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/0:155:155,0:155:5560:0:0:0,-46.6596,-500.515	0/0:105:104,1:104:3724:1:36:0,-28.2205,-331.97	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.811	0/1:173:93,80:93:3336:80:2861:-205.055,0,-248.371	0/1:72:22,50:22:792:50:1792:-139.291,0,-49.9315	0/1:47:17,30:17:612:30:1076:-82.9252,0,-41.265	0/1:10:4,6:4:144:6:216:-16.7341,0,-10.3033	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:23:8,15:8:269:15:510:-39.252,0,-17.6124	0/1:203:108,95:108:3868:95:3408:-245.594,0,-287.206	0/1:122:53,69:53:1900:69:2480:-186.352,0,-133.925	0/1:166:75,91:75:2666:91:3255:-241.579,0,-190.214	0/1:7:1,6:1:36:6:216:-17.6565,0,-1.49106	0/0:51:51,0:51:1821:0:0:0,-15.3525,-164.169	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.078	0/1:93:42,51:42:1495:51:1828:-136.457,0,-106.803	0/1:82:53,29:53:1904:29:1040:-68.9113,0,-146.945	0/1:57:29,28:29:1044:28:1004:-73.2872,0,-77.1161	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:86:44,42:44:1576:42:1493:-108.626,0,-116.243	0/1:130:60,70:60:2156:70:2512:-186.811,0,-155.173	0/1:79:49,30:49:1756:30:1072:-71.8399,0,-134.543	0/0:141:141,0:141:5055:0:0:0,-42.4452,-455.093	0/1:105:63,42:63:2248:42:1500:-103.265,0,-170.975	0/1:16:2,14:2:72:14:500:-40.2477,0,-2.02024	0/0:161:161,0:161:5780:0:0:0,-48.4658,-520.313	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:20:11,9:11:396:9:324:-23.4549,0,-29.9621	0/1:107:44,63:44:1561:63:2249:-169.312,0,-108.562	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:10:7,3:7:252:3:108:-6.62,0,-20.0187	0/1:14:7,7:7:252:7:248:-17.576,0,-18.8145	0/1:32:8,24:8:288:24:860:-67.7314,0,-16.6298	0/0:211:210,1:210:7520:1:36:0,-59.9216,-673.241	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:111:110,1:110:3948:1:36:0,-29.8171,-351.913	0/1:118:63,55:63:2229:55:1953:-140.308,0,-165.347	0/1:78:42,36:42:1504:36:1292:-92.8233,0,-112.068	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:66:36,30:36:1292:30:1076:-77.132,0,-96.7158	0/1:40:12,28:12:432:28:993:-77.2384,0,-27.18	0/1:119:61,58:61:2180:58:2075:-150.415,0,-160.626	0/1:69:33,36:33:1188:36:1292:-95.6967,0,-86.4575	0/1:137:81,56:81:2907:56:2012:-140.02,0,-220.623	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.319	0/1:53:34,19:34:1212:19:684:-45.7689,0,-93.4308	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/0:127:127,0:127:4536:0:0:0,-38.2308,-408.408	0/1:73:36,37:36:1296:37:1302:-95.261,0,-94.9687	0/1:155:81,74:81:2904:74:2652:-191.407,0,-214.936	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/1:96:46,50:46:1633:50:1792:-132.398,0,-118.358	0/1:119:50,69:50:1800:69:2472:-186.667,0,-126.46	0/0:102:102,0:102:3648:0:0:0,-30.7051,-328.525	0/0:136:136,0:136:4875:0:0:0,-40.9401,-438.899	0/0:96:96,0:96:3443:0:0:0,-28.8989,-310.076	0/1:165:74,91:74:2652:91:3264:-243.689,0,-189.253	0/1:45:20,25:20:720:25:892:-66.5052,0,-51.1529	0/1:87:32,55:32:1148:55:1976:-151.184,0,-77.4402	0/0:114:113,1:113:4046:1:36:0,-30.7229,-360.706	0/1:199:116,83:116:4143:83:2961:-206.392,0,-313.149	0/1:317:147,168:147:5266:168:6028:-445.312,0,-378.965	0/1:74:26,48:26:936:48:1715:-131.956,0,-62.2832	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/0:95:92,3:92:3303:3:108:0,-18.5299,-287.419
chr02	24468965	.	G	A	60161.9	PASS	AB=0.497417;ABP=3.42531;AC=53;AF=0.281915;AN=188;AO=3571;CIGAR=1X;DP=12355;DPB=12355;DPRA=1.25902;EPP=7757.34;EPPR=19062;GTI=0;LEN=1;MEANALT=1.08772;MQM=59.9154;MQMR=59.9731;NS=94;NUMALT=1;ODDS=5.43343;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127571;QR=313314;RO=8777;RPL=0;RPP=7757.34;RPPR=19062;RPR=3571;RUN=1;SAF=3571;SAP=7757.34;SAR=0;SRF=8777;SRP=19062;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/0:241:238,2:238:8472:2:72:0,-65.7703,-755.643	0/1:152:63,89:63:2264:89:3184:-241.01,0,-158.266	0/0:205:204,1:204:7309:1:36:0,-58.1129,-654.259	0/1:84:42,42:42:1500:42:1508:-110.728,0,-110.008	0/1:96:39,57:39:1381:57:2048:-155.693,0,-95.6879	0/1:201:102,99:102:3649:99:3520:-256.502,0,-268.106	0/1:239:114,125:114:4054:125:4453:-328.993,0,-293.1	0/1:129:69,60:69:2430:60:2152:-155.114,0,-180.121	0/1:173:68,105:68:2444:105:3746:-285.259,0,-168.119	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:93:36,57:36:1283:57:2043:-156.146,0,-87.7768	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.961	0/1:195:106,89:106:3789:89:3204:-229.749,0,-282.506	0/1:70:36,34:36:1296:34:1224:-89.3949,0,-95.8718	0/1:76:43,32:43:1544:32:1144:-80.332,0,-116.316	0/0:128:128,0:128:4563:0:0:0,-38.5318,-410.835	0/0:98:98,0:98:3509:0:0:0,-29.5009,-316.018	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:183:98,85:98:3512:85:2987:-213.971,0,-261.201	0/0:183:183,0:183:6473:0:0:0,-55.0885,-582.632	0/0:163:163,0:163:5812:0:0:0,-49.0679,-522.824	0/1:69:44,25:44:1584:25:892:-59.8286,0,-122.08	0/0:160:160,0:160:5729:0:0:0,-48.1648,-515.408	0/0:117:117,0:117:4150:0:0:0,-35.2205,-373.683	0/0:353:350,3:350:12466:3:108:0,-96.1884,-1111.7	0/0:261:261,0:261:9306:0:0:0,-78.5688,-836.405	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:250:138,112:138:4937:112:3967:-281.954,0,-369.221	0/1:259:132,127:132:4721:127:4552:-331.853,0,-347.081	0/1:198:93,105:93:3306:105:3741:-277.284,0,-238.153	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:14:10,4:10:356:4:144:-9.0992,0,-28.1668	0/1:232:116,116:116:4168:116:4145:-303.39,0,-305.462	0/1:330:182,148:182:6491:148:5304:-378.154,0,-484.932	0/1:88:43,45:43:1544:45:1612:-118.879,0,-112.762	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:167:167,0:167:5996:0:0:0,-50.272,-539.699	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:180:97,83:97:3453:83:2965:-212.896,0,-256.797	0/1:71:38,33:38:1364:33:1188:-85.8555,0,-101.688	0/1:85:54,31:54:1913:31:1104:-74.0371,0,-146.858	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.868	0/1:195:98,97:98:3520:97:3484:-255.032,0,-258.308	0/1:216:109,107:109:3904:107:3802:-277.222,0,-286.531	0/1:142:82,60:82:2936:60:2152:-151.201,0,-221.728	0/0:216:216,0:216:7710:0:0:0,-65.0225,-693.918	0/1:149:68,81:68:2440:81:2874:-214.033,0,-174.932	0/1:13:4,9:4:144:9:309:-24.2273,0,-9.40023	0/0:212:212,0:212:7586:0:0:0,-63.8184,-682.775	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:33:18,15:18:644:15:536:-38.6408,0,-48.3566	0/1:156:86,70:86:3077:70:2481:-176.452,0,-230.196	0/0:30:29,0:29:1036:0:0:0,-8.72987,-93.1942	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:48:26,22:26:913:22:777:-55.8009,0,-68.0346	0/1:140:66,74:66:2372:74:2636:-195.34,0,-171.593	0/0:190:188,2:188:6732:2:72:0,-50.359,-599.115	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:170:170,0:170:6044:0:0:0,-51.1751,-544.061	0/1:303:174,128:174:6210:128:4581:-321.272,0,-467.873	0/1:148:71,77:71:2537:77:2757:-203.817,0,-184.027	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/1:123:54,69:54:1917:69:2471:-185.616,0,-135.779	0/1:161:56,105:56:1993:105:3753:-289.5,0,-131.176	0/1:48:24,24:24:845:24:864:-63.6331,0,-61.9177	0/1:124:57,67:57:2006:67:2389:-177.933,0,-143.482	0/1:157:88,69:88:3164:69:2476:-175.832,0,-237.722	0/0:39:39,0:39:1347:0:0:0,-11.7402,-121.522	0/0:169:169,0:169:6030:0:0:0,-50.8741,-542.802	0/1:105:49,56:49:1741:56:1996:-148.283,0,-125.364	0/0:400:400,0:400:14221:0:0:0,-120.412,-1279.16	0/0:158:158,0:158:5646:0:0:0,-47.5627,-508.258	0/1:208:87,121:87:3094:121:4321:-326.407,0,-216.071	0/1:211:112,97:112:3994:97:3454:-247.793,0,-296.372	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:139:139,0:139:4950:0:0:0,-41.8432,-445.642	0/1:203:111,92:111:3961:92:3297:-235.838,0,-295.571	0/1:214:111,102:111:3988:102:3649:-264.133,0,-294.629	0/0:121:121,0:121:4321:0:0:0,-36.4246,-389.065	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/0:141:141,0:141:5028:0:0:0,-42.4452,-452.666	0/1:171:97,74:97:3475:74:2648:-187.09,0,-261.485	0/1:31:14,17:14:504:17:608:-45.7201,0,-36.3662	0/1:103:42,61:42:1497:61:2188:-166.178,0,-104.016	0/0:90:90,0:90:3194:0:0:0,-27.0927,-287.682	0/1:94:37,57:37:1328:57:2048:-156.295,0,-91.5254	0/1:109:54,55:54:1929:55:1961:-143.953,0,-141.072	0/1:62:22,40:22:788:40:1440:-111.234,0,-52.5809	0/0:96:96,0:96:3384:0:0:0,-28.8989,-304.772	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.604
chr02	24468973	.	T	C	60143.4	PASS	AB=0.497343;ABP=3.44885;AC=53;AF=0.281915;AN=188;AO=3565;CIGAR=1X;DP=12309;DPB=12309;DPRA=1.26857;EPP=7744.31;EPPR=18977.3;GTI=0;LEN=1;MEANALT=1.0339;MQM=59.9021;MQMR=59.9849;NS=94;NUMALT=1;ODDS=5.30405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127475;QR=313023;RO=8742;RPL=0;RPP=7744.31;RPPR=18977.3;RPR=3565;RUN=1;SAF=3565;SAP=7744.31;SAR=0;SRF=8742;SRP=18986;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/0:234:232,1:232:8327:1:36:0,-66.8266,-745.91	0/1:157:66,91:66:2364:91:3239:-244.447,0,-165.757	0/0:202:201,1:201:7170:1:36:0,-57.2098,-641.758	0/1:83:40,43:40:1432:43:1544:-114.268,0,-104.192	0/1:97:40,57:40:1423:57:2040:-154.672,0,-99.1668	0/1:202:103,99:103:3679:99:3532:-257.282,0,-270.505	0/1:236:111,125:111:3968:125:4492:-333.393,0,-286.268	0/1:130:70,60:70:2507:60:2156:-155.173,0,-186.748	0/1:175:70,105:70:2503:105:3756:-285.472,0,-172.839	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:92:35,57:35:1233:57:2048:-156.897,0,-83.5773	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:197:110,87:110:3948:87:3080:-217.993,0,-296.208	0/1:71:36,35:36:1292:35:1247:-91.1609,0,-95.2106	0/1:76:46,30:46:1648:30:1067:-73.4629,0,-125.73	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/0:101:101,0:101:3615:0:0:0,-30.404,-325.555	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:184:99,85:99:3540:85:3030:-217.539,0,-263.42	0/0:182:182,0:182:6500:0:0:0,-54.7875,-584.877	0/0:161:160,1:160:5748:1:36:0,-45.2782,-514.246	0/1:69:44,25:44:1565:25:896:-60.1893,0,-120.369	0/0:157:157,0:157:5632:0:0:0,-47.2617,-506.682	0/0:112:112,0:112:3983:0:0:0,-33.7154,-358.66	0/0:355:352,3:352:12588:3:108:0,-96.7905,-1122.66	0/0:260:260,0:260:9296:0:0:0,-78.2678,-836.606	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:250:139,111:139:4973:111:3978:-282.943,0,-372.46	0/1:259:131,127:131:4700:127:4556:-332.307,0,-345.282	0/1:198:93,105:93:3324:105:3744:-277.555,0,-239.775	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:235:118,117:118:4236:117:4183:-305.905,0,-310.676	0/1:330:184,146:184:6587:146:5232:-371.677,0,-493.57	0/1:88:43,45:43:1544:45:1616:-119.239,0,-112.762	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/0:168:168,0:168:6028:0:0:0,-50.573,-542.578	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:180:96,84:96:3435:84:2995:-215.596,0,-255.177	0/1:72:39,33:39:1400:33:1188:-85.5544,0,-104.625	0/1:84:53,31:53:1896:31:1107:-74.6323,0,-145.632	0/0:93:93,0:93:3320:0:0:0,-27.9958,-299.019	0/1:189:94,95:94:3360:95:3387:-248.131,0,-245.722	0/1:217:108,109:108:3876:109:3902:-285.914,0,-283.71	0/1:142:80,62:80:2876:62:2224:-157.678,0,-216.33	0/0:217:217,0:217:7772:0:0:0,-65.3235,-699.507	0/1:148:67,81:67:2385:81:2899:-216.585,0,-170.354	0/1:14:4,10:4:129:10:356:-28.1668,0,-7.71324	0/0:212:212,0:212:7612:0:0:0,-63.8184,-685.114	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/1:158:86,72:86:3072:72:2575:-184.307,0,-229.132	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:46:24,22:24:860:22:792:-57.7583,0,-63.8745	0/1:141:67,74:67:2408:74:2644:-195.757,0,-174.531	0/0:187:185,2:185:6643:2:72:0,-49.4559,-591.108	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7375	0/0:167:167,0:167:5957:0:0:0,-50.272,-536.235	0/1:300:171,129:171:6127:129:4612:-324.876,0,-461.22	0/1:148:71,77:71:2552:77:2768:-204.808,0,-185.378	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/1:122:54,68:54:1944:68:2421:-181.419,0,-138.51	0/1:161:55,106:55:1964:106:3766:-290.674,0,-128.569	0/1:48:24,24:24:864:24:860:-63.2724,0,-63.6331	0/1:120:54,66:54:1920:66:2351:-175.721,0,-136.954	0/1:156:88,68:88:3140:68:2423:-171.364,0,-235.863	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:164:164,0:164:5875:0:0:0,-49.3689,-528.859	0/1:103:47,56:47:1688:56:2001:-149.349,0,-121.201	0/0:394:394,0:394:14088:0:0:0,-118.606,-1267.69	0/0:155:155,0:155:5556:0:0:0,-46.6596,-500.163	0/1:202:85,117:85:3052:117:4188:-316.253,0,-214.101	0/1:216:118,98:118:4217:98:3520:-251.984,0,-314.687	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:136:136,0:136:4867:0:0:0,-40.9401,-438.175	0/1:201:110,91:110:3929:91:3255:-232.663,0,-293.294	0/1:213:112,101:112:3974:101:3607:-260.717,0,-293.731	0/0:121:121,0:121:4352:0:0:0,-36.4246,-391.853	0/0:98:97,1:97:3488:1:36:0,-25.9027,-310.531	0/0:141:141,0:141:5064:0:0:0,-42.4452,-455.903	0/1:172:98,74:98:3520:74:2648:-186.789,0,-265.232	0/1:28:12,16:12:432:16:567:-42.9319,0,-30.7924	0/1:101:41,60:41:1472:60:2148:-163.182,0,-102.372	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/1:93:37,56:37:1328:56:2004:-152.638,0,-91.8264	0/1:108:54,54:54:1944:54:1936:-142.005,0,-142.725	0/1:62:22,40:22:792:40:1423:-109.703,0,-52.9418	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/0:128:128,0:128:4600:0:0:0,-38.5318,-414.162
chr02	24468979	.	G	A	60705.9	PASS	AB=0.498462;ABP=3.15725;AC=53;AF=0.281915;AN=188;AO=3573;CIGAR=1X;DP=12293;DPB=12293;DPRA=1.26999;EPP=7753;EPPR=18814.6;GTI=0;LEN=1;MEANALT=1.10526;MQM=59.9113;MQMR=59.9867;NS=94;NUMALT=1;ODDS=4.90533;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128088;QR=311653;RO=8711;RPL=1;RPP=7753;RPPR=18814.6;RPR=3572;RUN=1;SAF=3573;SAP=7761.68;SAR=0;SRF=8711;SRP=18918.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:239:236,2:236:8464:2:72:0,-65.1682,-754.923	0/1:155:66,89:66:2345:89:3185:-240.212,0,-164.648	0/0:203:202,1:202:7228:1:36:0,-57.5108,-646.973	0/1:83:40,43:40:1436:43:1531:-113.097,0,-104.552	0/1:95:39,56:39:1400:56:2012:-152.755,0,-97.7013	0/1:202:102,99:102:3652:99:3564:-260.099,0,-268.017	0/1:234:111,123:111:3946:123:4420:-327.525,0,-284.89	0/1:131:71,60:71:2543:60:2160:-155.232,0,-189.685	0/1:172:67,105:67:2389:105:3769:-287.543,0,-163.471	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:94:38,56:38:1352:56:2016:-153.416,0,-93.6835	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:193:103,90:103:3672:90:3236:-233.23,0,-272.583	0/1:71:35,35:35:1260:35:1245:-90.9209,0,-92.2736	0/1:78:46,32:46:1648:32:1148:-80.1495,0,-125.128	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:183:96,86:96:3437:86:3084:-222.679,0,-254.433	0/0:184:184,0:184:6574:0:0:0,-55.3895,-591.722	0/0:157:157,0:157:5636:0:0:0,-47.2617,-507.359	0/1:70:44,26:44:1584:26:936:-63.4874,0,-121.779	0/0:159:159,0:159:5672:0:0:0,-47.8638,-510.599	0/0:112:112,0:112:4009:0:0:0,-33.7154,-360.997	0/0:350:347,3:347:12413:3:108:0,-95.2853,-1106.93	0/0:255:255,0:255:9141:0:0:0,-76.7626,-821.557	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	0/1:248:137,111:137:4904:111:3975:-283.273,0,-366.856	0/1:259:132,127:132:4737:127:4549:-331.598,0,-348.518	0/1:199:94,105:94:3349:105:3757:-278.423,0,-241.721	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:234:118,116:118:4236:116:4164:-304.496,0,-310.977	0/1:328:180,148:180:6449:148:5324:-380.553,0,-481.756	0/1:89:43,46:43:1531:46:1656:-122.537,0,-111.291	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:169:169,0:169:6057:0:0:0,-50.8741,-545.185	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:178:97,81:97:3446:81:2874:-205.311,0,-256.768	0/1:72:39,32:39:1400:32:1152:-82.2572,0,-104.566	0/1:82:52,30:52:1856:30:1080:-72.7827,0,-142.635	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/1:192:96,96:96:3428:96:3441:-252.065,0,-250.937	0/1:219:110,109:110:3910:109:3895:-284.758,0,-286.167	0/1:143:81,62:81:2893:62:2212:-156.297,0,-217.557	0/0:217:217,0:217:7773:0:0:0,-65.3235,-699.559	0/1:148:68,80:68:2440:80:2880:-214.883,0,-175.233	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/0:206:205,0:205:7345:0:0:0,-61.7111,-660.736	0/0:65:65,0:65:2291:0:0:0,-19.5669,-206.447	0/1:34:19,15:19:680:15:540:-38.7015,0,-51.2941	0/1:156:84,72:84:3005:72:2577:-185.087,0,-223.719	0/0:31:31,0:31:1089:0:0:0,-9.33193,-98.3173	0/1:8:6,2:6:201:2:72:-4.42848,0,-16.0088	0/1:46:24,22:24:864:22:792:-57.7583,0,-64.2352	0/1:139:66,73:66:2372:73:2590:-191.502,0,-171.895	0/0:191:189,2:189:6792:2:72:0,-50.66,-604.512	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:171:170,0:170:6073:0:0:0,-51.1751,-546.402	0/1:301:173,128:173:6147:128:4580:-321.729,0,-462.719	0/1:147:70,77:70:2500:77:2772:-205.469,0,-181.002	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/1:122:53,69:53:1904:69:2479:-186.637,0,-134.912	0/1:162:56,106:56:2008:106:3795:-292.969,0,-132.226	0/1:49:24,25:24:856:25:896:-66.2099,0,-62.6106	0/1:124:57,67:57:2006:67:2404:-179.284,0,-143.482	0/1:155:87,68:87:3117:68:2429:-172.204,0,-234.095	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/0:163:163,0:163:5808:0:0:0,-49.0679,-522.833	0/1:103:48,55:48:1705:55:1946:-144.403,0,-122.728	0/0:396:395,0:395:14113:0:0:0,-118.907,-1269.72	0/0:155:155,0:155:5568:0:0:0,-46.6596,-501.241	0/1:202:85,117:85:3022:117:4174:-314.989,0,-211.4	0/1:214:115,99:115:4120:99:3545:-254.834,0,-306.564	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:135:135,0:135:4824:0:0:0,-40.639,-434.313	0/1:202:110,92:110:3925:92:3304:-236.77,0,-292.634	0/1:217:113,104:113:4018:104:3736:-271.116,0,-296.484	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.611	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.828	0/1:172:98,74:98:3507:74:2664:-188.228,0,-264.063	0/1:31:13,18:13:464:18:644:-48.9587,0,-32.7656	0/1:102:41,61:41:1468:61:2196:-167.199,0,-101.711	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/1:93:36,56:36:1288:56:2016:-153.658,0,-88.1691	0/1:109:54,55:54:1944:55:1972:-144.943,0,-142.424	0/1:63:22,41:22:788:41:1476:-114.171,0,-52.2799	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:129:129,0:129:4631:0:0:0,-38.8329,-416.951
chr02	24507115	.	G	C	22115.6	PASS	AB=0.469018;ABP=29.2481;AC=52;AF=0.276596;AN=188;AO=1481;CIGAR=1X;DP=5891;DPB=5891;DPRA=1.03855;EPP=3218.96;EPPR=9568.35;GTI=3;LEN=1;MEANALT=1.08929;MQM=59.9656;MQMR=59.9986;NS=94;NUMALT=1;ODDS=0.428975;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50771;QR=155711;RO=4405;RPL=1481;RPP=3218.96;RPPR=9559.66;RPR=0;RUN=1;SAF=1481;SAP=3218.96;SAR=0;SRF=4404;SRP=9559.66;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:74:37,37:37:1291:37:1262:-91.5996,0,-94.2112	0/0:176:176,0:176:6253:0:0:0,-52.9813,-562.869	0/1:11:2,9:2:68:9:320:-25.831,0,-3.14638	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:33:15,18:15:536:18:617:-45.9159,0,-38.6408	0/1:93:51,42:51:1812:42:1411:-99.2794,0,-135.366	0/1:26:16,10:16:557:10:356:-24.5545,0,-42.6288	0/1:32:13,19:13:464:19:667:-50.7217,0,-32.4645	0/0:81:81,0:81:2851:0:0:0,-24.3834,-256.828	0/1:85:41,44:41:1433:44:1504:-110.057,0,-103.676	0/0:68:68,0:68:2402:0:0:0,-20.47,-216.437	0/1:106:54,52:54:1890:52:1772:-127.851,0,-138.468	0/1:54:34,20:34:1185:20:678:-45.0745,0,-90.6968	0/1:50:24,26:24:851:26:854:-62.1086,0,-61.858	0/0:49:49,0:49:1713:0:0:0,-14.7505,-154.453	0/0:43:43,0:43:1527:0:0:0,-12.9443,-137.722	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/1:61:31,30:31:1116:30:1015:-73.2903,0,-82.3889	0/0:83:83,0:83:2937:0:0:0,-24.9855,-264.563	0/0:39:39,0:39:1358:0:0:0,-11.7402,-122.514	0/1:30:13,17:13:442:17:585:-43.941,0,-31.0734	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/0:226:225,1:225:7953:1:36:0,-64.4345,-712.202	0/0:180:180,0:180:6345:0:0:0,-54.1854,-571.147	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/1:198:106,92:106:3752:92:3164:-225.381,0,-278.277	0/1:138:77,61:77:2724:61:2080:-145.923,0,-203.86	0/1:61:25,35:25:900:35:1225:-92.1303,0,-62.8994	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/1:10:6,4:6:216:4:135:-9.47221,0,-16.7802	0/1:153:86,66:86:3009:66:2204:-152.504,0,-224.928	0/1:43:19,24:19:672:24:834:-62.4313,0,-47.8625	0/1:48:20,28:20:712:28:947:-71.0834,0,-49.9572	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:75:75,0:75:2632:0:0:0,-22.5772,-237.125	0/0:36:36,0:36:1271:0:0:0,-10.8371,-114.692	0/1:59:42,17:42:1491:17:564:-33.3117,0,-116.723	0/1:47:26,21:26:908:21:724:-51.3283,0,-67.8841	0/1:45:17,28:17:604:28:937:-71.0849,0,-41.1443	0/0:45:45,0:45:1566:0:0:0,-13.5463,-141.226	0/1:58:35,23:35:1243:23:794:-54.3161,0,-94.7141	0/1:96:47,49:47:1675:49:1671:-121.684,0,-122.138	0/1:39:20,19:20:716:19:667:-48.6145,0,-53.0275	0/0:140:140,0:140:4988:0:0:0,-42.1442,-449.068	0/1:24:14,10:14:504:10:352:-24.7935,0,-38.4734	0/1:9:5,4:5:176:4:128:-9.12622,0,-13.4757	0/0:45:44,1:44:1572:1:36:0,-9.94807,-138.173	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/1:15:4,11:4:144:11:379:-29.9251,0,-8.79817	0/1:121:71,50:71:2526:50:1762:-122.437,0,-191.166	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:5:4,1:4:135:1:36:-2.09312,0,-10.9774	0/1:13:6,6:6:212:6:212:-15.4536,0,-15.4536	0/1:42:32,10:32:1140:10:352:-19.3749,0,-90.2659	0/0:127:127,0:127:4485:0:0:0,-38.2308,-403.824	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:200:200,0:200:7101:0:0:0,-60.206,-639.153	0/1:143:67,75:67:2383:75:2596:-190.782,0,-171.621	0/1:60:31,29:31:1095:29:983:-70.7128,0,-80.7973	0/0:65:65,0:65:2307:0:0:0,-19.5669,-207.891	0/1:46:25,21:25:877:21:713:-50.6367,0,-65.3978	0/1:97:40,57:40:1393:57:2005:-151.522,0,-96.4623	0/1:50:33,17:33:1135:17:588:-38.1935,0,-87.3974	0/1:27:17,10:17:589:10:348:-23.5273,0,-45.2055	0/1:44:29,15:29:1032:15:510:-32.9768,0,-79.9482	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:102:102,0:102:3608:0:0:0,-30.7051,-324.927	0/1:46:30,16:30:1072:16:568:-37.6045,0,-82.9451	0/0:81:81,0:81:2860:0:0:0,-24.3834,-257.638	0/0:124:124,0:124:4405:0:0:0,-37.3277,-396.624	0/1:33:28,5:28:1000:5:176:-6.25103,0,-80.3814	0/1:101:52,49:52:1859:49:1707:-123.508,0,-137.185	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/1:111:68,43:68:2385:43:1448:-97.1928,0,-181.491	0/1:109:61,48:61:2154:48:1654:-116.328,0,-161.314	0/0:55:54,1:54:1924:1:32:0,-13.3573,-170.238	0/0:98:98,0:98:3462:0:0:0,-29.5009,-311.795	0/0:64:64,0:64:2225:0:0:0,-19.2659,-200.512	0/1:113:59,53:59:2104:53:1797:-127.93,0,-155.554	0/1:20:4,16:4:135:16:560:-44.7081,0,-6.46191	0/1:64:32,32:32:1109:32:1123:-82.1112,0,-80.8486	0/0:67:67,0:67:2362:0:0:0,-20.169,-212.839	0/1:38:15,23:15:532:23:811:-61.8708,0,-36.7739	0/1:109:64,45:64:2227:45:1499:-102.38,0,-167.878	0/1:49:14,35:14:504:35:1166:-90.4826,0,-30.9476	0/0:76:76,0:76:2675:0:0:0,-22.8783,-240.994	0/0:90:88,2:88:3122:2:63:0,-21.1095,-275.224
chr02	24637033	.	G	A	84022.8	PASS	AB=0.541385;ABP=44.8885;AC=134;AF=0.712766;AN=188;AO=4032;CIGAR=1X;DP=5327;DPB=5327;DPRA=0;EPP=8732.35;EPPR=2784.73;GTI=5;LEN=1;MEANALT=1.02128;MQM=59.5866;MQMR=59.9737;NS=94;NUMALT=1;ODDS=1.45213;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143696;QR=45792;RO=1293;RPL=4032;RPP=8758.39;RPPR=2810.72;RPR=0;RUN=1;SAF=4029;SAP=8732.35;SAR=3;SRF=1290;SRP=2784.73;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:462:-41.9141,-3.91339,0	1/1:22:0,22:0:0:22:784:-70.8675,-6.62266,0	0/1:49:23,26:23:820:26:932:-69.4475,0,-59.372	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:12:5,7:5:180:7:237:-18.0467,0,-12.9397	0/1:21:7,14:7:252:14:495:-38.5467,0,-16.7073	0/1:18:7,11:7:248:11:381:-29.1997,0,-17.2457	0/1:38:16,22:16:572:22:784:-59.4362,0,-40.3661	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5027	0/1:38:15,23:15:532:23:820:-62.6787,0,-36.7739	1/1:60:0,59:0:0:59:2101:-188.981,-17.7608,0	0/1:38:23,15:23:800:15:540:-37.4974,0,-60.8766	1/1:23:0,23:0:0:23:821:-74.2107,-6.92369,0	0/1:16:7,9:7:240:9:324:-24.6894,0,-17.1182	0/1:26:15,11:15:513:11:396:-28.156,0,-38.6661	0/1:23:9,14:9:315:14:496:-38.0409,0,-21.7635	0/1:8:1,7:1:32:7:252:-20.6207,0,-0.791073	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:24:0,24:0:0:24:851:-76.8999,-7.22472,0	0/1:53:22,31:22:779:31:1093:-82.7231,0,-54.4775	1/1:57:0,57:0:0:57:2033:-183.24,-17.1587,0	1/1:34:0,34:0:0:34:1220:-110.106,-10.235,0	0/1:41:19,22:19:667:22:788:-58.9026,0,-48.0118	1/1:23:0,23:0:0:23:820:-74.1146,-6.92369,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:103:0,103:0:0:103:3700:-333.129,-31.0061,0	1/1:60:0,60:0:0:60:2131:-191.919,-18.0618,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:92:47,45:47:1671:45:1603:-116.86,0,-122.982	0/1:44:13,31:13:468:31:1107:-86.6902,0,-29.2143	0/1:24:11,13:11:392:13:464:-34.8728,0,-28.3953	0/1:112:57,55:57:2012:55:1964:-143.285,0,-147.631	1/1:252:0,252:0:0:252:9014:-811.186,-75.8596,0	1/1:332:1,331:1:36:331:11800:-1057.78,-96.3437,0	1/1:459:0,459:0:0:459:16291:-1465.64,-138.173,0	0/1:324:155,168:155:5491:168:5985:-441.11,0,-396.726	0/1:62:33,29:33:1167:29:1026:-73.9875,0,-86.6725	0/1:44:17,27:17:612:27:949:-72.4758,0,-42.1681	0/1:61:34,27:34:1208:27:957:-68.0244,0,-90.6633	0/1:107:51,56:51:1824:56:1999:-147.961,0,-132.231	1/1:44:0,44:0:0:44:1568:-141.393,-13.2453,0	1/1:38:0,38:0:0:38:1364:-123.039,-11.4391,0	0/1:44:13,31:13:464:31:1100:-86.0641,0,-28.8522	0/1:11:7,4:7:235:4:144:-10.0023,0,-18.1666	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	1/1:23:1,22:1:36:22:772:-66.2026,-3.32542,0	0/1:24:9,15:9:311:15:540:-41.7118,0,-21.099	0/1:46:21,25:21:748:25:892:-66.729,0,-53.7979	0/1:29:10,19:10:360:19:684:-52.5308,0,-24.0144	1/1:50:0,50:0:0:50:1762:-158.86,-15.0515,0	0/1:38:18,20:18:644:20:720:-53.6864,0,-46.8515	0/1:71:32,39:32:1129:39:1385:-103.569,0,-80.5432	1/1:33:0,33:0:0:33:1180:-106.506,-9.93399,0	1/1:15:0,15:0:0:15:540:-48.9356,-4.51545,0	0/1:100:48,52:48:1707:52:1860:-137.418,0,-123.812	0/1:59:27,32:27:960:32:1139:-85.0502,0,-68.9555	1/1:29:0,29:0:0:29:1040:-93.9079,-8.72987,0	0/1:110:46,64:46:1611:64:2291:-172.799,0,-112.16	0/1:69:26,43:26:928:43:1540:-118.098,0,-63.0672	0/1:14:3,11:3:93:11:396:-31.7683,0,-4.46231	1/1:36:0,36:0:0:36:1273:-114.866,-10.8371,0	1/1:109:0,109:0:0:109:3904:-351.507,-32.8123,0	1/1:51:0,51:0:0:51:1816:-163.72,-15.3525,0	0/1:58:27,31:27:964:31:1116:-83.292,0,-69.6171	0/1:16:5,11:5:176:11:396:-31.1616,0,-11.3685	1/1:20:0,20:0:0:20:716:-64.5901,-6.0206,0	0/1:52:18,34:18:644:34:1220:-94.4532,0,-42.637	0/1:54:29,25:29:1032:25:900:-65.0654,0,-76.9379	0/1:72:36,36:36:1275:36:1292:-94.8913,0,-93.3781	0/1:8:1,7:1:36:7:242:-19.6987,0,-1.19003	0/1:9:1,8:1:36:8:284:-23.1937,0,-0.889005	1/1:144:0,144:0:0:144:5124:-461.284,-43.3483,0	1/1:58:0,58:0:0:58:2072:-186.734,-17.4597,0	0/1:31:15,16:15:532:16:547:-40.1945,0,-38.8812	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:63:0,63:0:0:63:2247:-202.483,-18.9649,0	0/1:11:3,8:3:104:8:284:-22.5911,0,-6.39148	0/1:46:18,28:18:644:28:1004:-76.8285,0,-44.4432	0/1:253:132,121:132:4712:121:4325:-313.04,0,-348.078	1/1:48:0,48:0:0:48:1724:-155.432,-14.4494,0	1/1:42:0,42:0:0:42:1474:-132.928,-12.6433,0	0/1:61:22,39:22:760:39:1391:-107.121,0,-50.353	1/1:24:0,24:0:0:24:852:-76.9958,-7.22472,0	1/1:26:0,26:0:0:26:923:-83.3583,-7.82678,0	1/1:6:0,6:0:0:6:212:-19.42,-1.80618,0	0/1:25:16,9:16:559:9:320:-21.6166,0,-43.1119	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:23:15,8:15:523:8:288:-19.3437,0,-40.4748	1/1:9:0,9:0:0:9:312:-28.4135,-2.70927,0	0/1:69:31,38:31:1088:38:1359:-101.774,0,-77.4582	0/1:112:45,67:45:1582:67:2338:-176.923,0,-108.949	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:35:0,35:0:0:35:1256:-113.342,-10.5361,0	1/1:19:1,18:1:32:18:648:-55.4502,-2.52026,0
chr02	24638402	.	T	C	33431	PASS	AB=0.502411;ABP=3.2197;AC=53;AF=0.281915;AN=188;AO=2089;CIGAR=1X;DP=7789;DPB=7789;DPRA=0.9787;EPP=4539.22;EPPR=12373.9;GTI=0;LEN=1;MEANALT=1.01754;MQM=59.4758;MQMR=59.5362;NS=94;NUMALT=1;ODDS=1.58059;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72802;QR=203760;RO=5697;RPL=1;RPP=4530.53;RPPR=12373.9;RPR=2088;RUN=1;SAF=1;SAP=4530.53;SAR=2088;SRF=0;SRP=12373.9;SRR=5697;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.205	0/1:87:28,59:28:996:59:2074:-160.69,0,-63.6936	0/0:280:280,0:280:10010:0:0:0,-84.2884,-900.288	0/1:58:39,19:39:1404:19:669:-43.0742,0,-109.065	0/1:48:22,26:22:788:26:927:-69.2979,0,-56.7954	0/1:100:40,60:40:1432:60:2101:-159.232,0,-99.0185	0/1:97:52,45:52:1860:45:1576:-112.928,0,-138.372	0/1:97:45,52:45:1612:52:1782:-131.456,0,-116.099	0/1:60:21,39:21:744:39:1364:-104.78,0,-49.1647	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4234	0/1:52:29,23:29:1040:23:789:-55.6668,0,-78.1552	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:26:11,15:11:383:15:500:-37.4895,0,-26.6031	0/1:30:14,16:14:500:16:541:-39.9167,0,-36.2489	0/1:27:11,16:11:396:16:572:-43.6856,0,-27.8549	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3571	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4697	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:172:80,92:80:2867:92:3186:-234.961,0,-206.422	0/0:250:250,0:250:8912:0:0:0,-75.2575,-801.811	0/0:149:149,0:149:5344:0:0:0,-44.8535,-480.277	0/1:125:77,48:77:2768:48:1714:-116.854,0,-211.074	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.564	0/0:285:283,2:283:10100:2:72:0,-78.9568,-900.893	0/0:187:187,0:187:6691:0:0:0,-56.2926,-602	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:285:141,144:141:5056:144:5011:-365.08,0,-369.306	0/1:196:103,93:103:3676:93:3222:-231.012,0,-271.848	0/1:112:67,45:67:2408:45:1584:-109.076,0,-183.205	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.4841	0/0:33:31,1:31:1112:1:36:0,-6.39327,-96.7044	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:17:7,10:7:252:10:347:-26.4461,0,-17.9114	0/1:106:51,55:51:1832:55:1931:-142.074,0,-133.195	0/1:146:77,69:77:2764:69:2382:-170.595,0,-204.809	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:125:124,1:124:4448:1:36:0,-34.0553,-396.617	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.699	0/1:116:64,52:64:2280:52:1802:-127.409,0,-170.539	0/1:21:9,12:9:320:12:428:-32.4764,0,-22.8207	0/1:35:26,9:26:936:9:308:-17.5158,0,-73.8655	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.397	0/1:65:31,34:31:1108:34:1165:-85.546,0,-80.464	0/1:173:77,96:77:2764:96:3327:-246.619,0,-196.811	0/1:86:50,36:50:1784:36:1249:-86.7624,0,-134.671	0/0:92:92,0:92:3280:0:0:0,-27.6948,-294.665	0/1:139:62,77:62:2220:77:2693:-200.22,0,-158.178	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.125	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.725	0/1:19:15,4:15:540:4:131:-6.3939,0,-43.1451	0/1:147:65,82:65:2323:82:2849:-212.394,0,-164.947	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.941	0/1:14:10,4:10:356:4:140:-8.73016,0,-28.1668	0/1:23:9,14:9:316:14:491:-37.5273,0,-21.8552	0/1:55:24,31:24:864:31:1074:-80.407,0,-61.5259	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.397	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:360:360,0:360:12883:0:0:0,-108.371,-1158.88	0/1:162:73,89:73:2611:89:3145:-234.406,0,-186.196	0/1:77:35,42:35:1256:42:1459:-107.644,0,-90.0761	0/0:73:73,0:73:2603:0:0:0,-21.9752,-234.378	0/1:210:118,92:118:4212:92:3262:-230.473,0,-315.857	0/1:147:57,90:57:2048:90:3151:-239.276,0,-140.34	0/1:9:4,5:4:144:5:171:-13.0162,0,-10.6043	0/1:48:26,22:26:936:22:759:-54.1782,0,-70.11	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.7232	0/0:32:32,0:32:1130:0:0:0,-9.63296,-102.007	0/0:102:102,0:102:3631:0:0:0,-30.7051,-326.968	0/1:73:32,41:32:1148:41:1417:-105.81,0,-81.6546	0/0:135:135,0:135:4807:0:0:0,-40.639,-432.087	0/0:194:194,0:194:6952:0:0:0,-58.3998,-625.609	0/1:63:39,24:39:1392:24:828:-55.8684,0,-106.614	0/1:128:56,72:56:2001:72:2523:-188.789,0,-141.83	0/1:23:9,14:9:324:14:478:-36.4204,0,-22.5822	0/0:92:91,1:91:3260:1:36:0,-24.0965,-290.022	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.279	0/1:204:115,89:115:4108:89:3094:-217.161,0,-308.3	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.68	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.8903	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1649	0/1:61:38,23:38:1364:23:788:-52.8703,0,-104.642	0/1:18:9,9:9:315:9:320:-23.7238,0,-23.2687	0/1:34:23,11:23:828:11:377:-23.8314,0,-64.5089	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:13:5,8:5:180:8:280:-21.6259,0,-12.6387	0/1:51:27,24:27:968:24:811:-57.5746,0,-72.0848	0/1:38:10,28:10:356:28:974:-76.5315,0,-20.9421	0/0:237:236,0:236:8427:0:0:0,-71.0431,-757.552	0/0:44:43,0:43:1517:0:0:0,-12.9443,-136.496
chr02	24638403	.	G	A	118974	PASS	AB=0.504888;ABP=3.85936;AC=135;AF=0.718085;AN=188;AO=5723;CIGAR=1X;DP=7754;DPB=7754;DPRA=0;EPP=12430.3;EPPR=4404.58;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.506;MQMR=59.4825;NS=94;NUMALT=1;ODDS=1.15993;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204191;QR=69790;RO=2027;RPL=0;RPP=12430.3;RPPR=4395.9;RPR=5723;RUN=1;SAF=0;SAP=12430.3;SAR=5723;SRF=1;SRP=4395.9;SRR=2026;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:85:0,85:0:0:85:3035:-272.906,-25.5876,0	0/1:88:60,28:60:2082:28:999:-63.687,0,-161.121	1/1:277:0,277:0:0:277:9892:-889.604,-83.3853,0	0/1:54:17,37:17:600:37:1320:-102.712,0,-38.0736	0/1:47:25,22:25:853:22:788:-57.0964,0,-62.9326	0/1:97:58,39:58:1984:39:1404:-97.4033,0,-149.572	0/1:92:40,52:40:1388:52:1852:-139.158,0,-97.5192	0/1:90:46,44:46:1636:44:1553:-112.895,0,-120.436	0/1:58:37,21:37:1251:21:744:-49.7668,0,-95.293	1/1:16:0,16:0:0:16:562:-50.9019,-4.81648,0	0/1:51:21,30:21:700:30:1072:-81.3343,0,-47.9468	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:26:15,11:15:491:11:396:-27.7827,0,-36.6751	0/1:29:15,14:15:523:14:496:-36.2209,0,-38.6015	0/1:27:16,11:16:533:11:392:-27.4922,0,-40.1582	1/1:17:0,17:0:0:17:605:-54.7686,-5.11751,0	1/1:9:0,9:0:0:9:324:-29.4697,-2.70927,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:167:87,80:87:2997:80:2868:-208.018,0,-219.654	1/1:251:0,251:0:0:251:8938:-804.136,-75.5585,0	1/1:150:0,150:0:0:150:5379:-483.47,-45.1545,0	0/1:120:44,76:44:1529:76:2709:-207.691,0,-101.742	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	1/1:47:0,47:0:0:47:1684:-151.802,-14.1484,0	1/1:289:2,287:2:68:287:10259:-915.589,-80.54,0	1/1:189:0,189:0:0:189:6720:-604.736,-56.8947,0	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	0/1:280:140,140:140:4835:140:4985:-364.451,0,-350.8	0/1:198:93,104:93:3254:104:3731:-276.227,0,-233.401	0/1:110:44,66:44:1522:66:2355:-179.039,0,-104.098	0/1:15:5,10:5:176:10:356:-27.8205,0,-11.6696	1/1:32:1,31:1:36:31:1108:-96.3204,-6.03469,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:17:10,7:10:352:7:252:-17.9114,0,-26.9007	0/1:105:54,51:54:1815:51:1820:-132.416,0,-131.931	0/1:147:70,77:70:2417:77:2759:-204.219,0,-173.444	0/1:14:5,9:5:171:9:320:-24.9279,0,-11.511	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:125:0,125:0:0:125:4452:-400.559,-37.6288,0	1/1:11:0,11:0:0:11:388:-35.1935,-3.31133,0	0/1:117:52,65:52:1784:65:2333:-175.004,0,-125.6	0/1:20:11,9:11:373:9:320:-23.1218,0,-27.8074	0/1:34:8,26:8:263:26:925:-73.3165,0,-13.7563	1/1:92:0,92:0:0:92:3278:-294.613,-27.6948,0	0/1:62:31,31:31:1061:31:1112:-81.7275,0,-77.0924	0/1:171:93,78:93:3173:78:2779:-198.763,0,-233.483	0/1:88:37,51:37:1296:51:1796:-135.089,0,-89.6897	1/1:94:0,94:0:0:94:3372:-302.883,-28.2968,0	0/1:138:75,63:75:2601:63:2216:-158.026,0,-192.275	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:78:0,78:0:0:78:2773:-249.796,-23.4803,0	1/1:58:0,58:0:0:58:2069:-186.422,-17.4597,0	0/1:19:4,15:4:135:15:540:-43.1451,0,-6.76294	0/1:146:81,65:81:2809:65:2313:-164.378,0,-209.098	1/1:51:0,51:0:0:51:1805:-162.722,-15.3525,0	0/1:14:4,10:4:132:10:360:-28.5299,0,-7.99208	0/1:23:14,9:14:492:9:300:-20.3984,0,-37.6186	0/1:55:30,24:30:1063:24:860:-61.26,0,-79.5203	1/1:70:0,70:0:0:70:2516:-226.635,-21.0721,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:359:0,359:0:0:359:12841:-1155.18,-108.07,0	0/1:158:85,73:85:2920:73:2609:-187.22,0,-215.305	0/1:78:43,35:43:1476:35:1251:-89.3241,0,-108.866	1/1:70:0,70:0:0:70:2481:-223.402,-21.0721,0	0/1:207:90,117:90:3071:117:4189:-314.71,0,-214.229	0/1:144:86,57:86:2972:57:2048:-141.293,0,-224.18	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:46:20,26:20:695:26:932:-70.3515,0,-49.024	0/1:16:7,9:7:239:9:324:-24.6607,0,-17.0262	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	1/1:101:0,101:0:0:101:3590:-323.279,-30.404,0	0/1:73:41,32:41:1392:32:1140:-80.934,0,-103.523	1/1:136:0,136:0:0:136:4838:-435.183,-40.9401,0	1/1:195:0,195:0:0:195:6979:-628.038,-58.7009,0	0/1:62:24,38:24:779:38:1364:-104.397,0,-51.7444	0/1:128:72,56:72:2482:56:2008:-142.461,0,-185.1	0/1:25:14,11:14:491:11:396:-28.457,0,-36.9954	1/1:92:1,91:1:36:91:3237:-287.953,-24.0965,0	1/1:117:1,116:1:36:116:4146:-370.094,-32.3177,0	0/1:202:86,116:86:2969:116:4130:-310.825,0,-206.529	1/1:39:0,39:0:0:39:1373:-123.747,-11.7402,0	1/1:31:0,31:0:0:31:1096:-98.8092,-9.33193,0	1/1:21:0,21:0:0:21:752:-67.9778,-6.32163,0	0/1:61:23,38:23:777:38:1355:-103.831,0,-51.8788	0/1:18:9,9:9:307:9:324:-24.0873,0,-22.5417	0/1:34:11,23:11:378:23:828:-64.5089,0,-23.9226	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:13:8,5:8:266:5:180:-12.6387,0,-20.3502	0/1:51:22,28:22:759:28:966:-71.9426,0,-52.9509	0/1:37:27,10:27:918:10:352:-20.8801,0,-71.791	1/1:246:0,246:0:0:246:8774:-788.94,-74.0534,0	1/1:44:0,44:0:0:44:1573:-141.785,-13.2453,0
chr02	24638620	.	T	C	379342	PASS	AB=0.503586;ABP=4.27166;AC=135;AF=0.718085;AN=188;AO=14525;CIGAR=1X;DP=20147;DPB=20147;DPRA=0;EPP=31535;EPPR=12191.5;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.8547;MQMR=59.9578;NS=94;NUMALT=1;ODDS=5.83453;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=511555;QR=200126;RO=5617;RPL=5905;RPP=1105;RPPR=581.243;RPR=8620;RUN=1;SAF=5904;SAP=1106.62;SAR=8621;SRF=2196;SRP=583.136;SRR=3421;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:113:0,113:0:0:113:3964:-356.945,-34.0164,0	1/1:407:0,407:0:0:407:14352:-1291.36,-122.519,0	0/1:272:138,134:138:4942:134:4683:-339.53,0,-363.048	1/1:508:3,504:3:108:504:17820:-1593.35,-142.877,0	0/1:273:149,124:149:5332:124:4410:-314.876,0,-397.815	0/1:174:82,92:82:2931:92:3279:-242.943,0,-211.004	0/1:305:145,160:145:5172:160:5641:-415.997,0,-373.805	0/1:414:194,220:194:6910:220:7766:-574.268,0,-497.333	0/1:277:154,123:154:5498:123:4322:-305.74,0,-411.532	0/1:337:160,177:160:5724:177:6278:-463.654,0,-413.829	1/1:67:0,67:0:0:67:2363:-212.926,-20.169,0	0/1:102:49,53:49:1747:53:1843:-135.428,0,-126.808	1/1:96:0,96:0:0:96:3378:-304.221,-28.8989,0	0/1:84:37,47:37:1328:47:1639:-122.374,0,-94.5357	0/1:138:51,87:51:1815:87:3037:-232.02,0,-122.089	0/1:91:33,58:33:1172:58:2048:-157.196,0,-78.3938	1/1:104:0,104:0:0:104:3620:-325.985,-31.3071,0	1/1:75:0,75:0:0:75:2617:-235.765,-22.5773,0	1/1:74:0,74:0:0:74:2583:-232.7,-22.2762,0	0/1:587:282,305:282:10046:305:10779:-793.313,0,-727.373	1/1:373:0,373:0:0:373:12993:-1168.98,-112.284,0	1/1:223:2,221:2:72:221:7786:-693.869,-60.293,0	0/1:212:102,110:102:3664:110:3890:-286.463,0,-266.144	1/1:176:0,176:0:0:176:6260:-563.46,-52.9813,0	1/1:196:0,196:0:0:196:6927:-623.465,-59.0019,0	1/1:839:2,837:2:72:837:29632:-2659.06,-245.727,0	1/1:506:1,505:1:36:505:17778:-1596.01,-148.723,0	1/1:49:0,49:0:0:49:1730:-155.983,-14.7505,0	0/1:661:342,318:342:12226:318:11221:-810.833,0,-901.249	0/1:184:85,99:85:3047:99:3480:-258.008,0,-217.88	0/1:283:129,154:129:4628:154:5427:-403.351,0,-331.491	0/1:6:2,4:2:68:4:129:-10.1215,0,-4.65153	1/1:13:0,13:0:0:13:464:-42.0929,-3.91339,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:14:0,14:0:0:14:482:-43.7061,-4.21442,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:261:138,123:138:4926:123:4276:-306.454,0,-364.922	0/1:370:179,191:179:6365:191:6743:-495.513,0,-461.373	0/1:90:37,52:37:1311:52:1806:-135.757,0,-91.227	0/1:7:5,2:5:171:2:72:-4.72951,0,-13.6182	1/1:303:0,303:0:0:303:10669:-960.066,-91.2121,0	1/1:40:0,40:0:0:40:1407:-126.917,-12.0412,0	0/1:366:204,162:204:7260:162:5718:-404.477,0,-543.192	0/1:160:74,86:74:2598:86:3008:-222.786,0,-185.902	0/1:101:46,55:46:1639:55:1912:-141.949,0,-117.394	1/1:306:0,306:0:0:306:10789:-970.919,-92.1152,0	0/1:305:131,174:131:4668:174:6115:-458.642,0,-328.47	0/1:416:205,211:205:7289:211:7474:-547.386,0,-530.836	0/1:290:141,149:141:5021:149:5259:-386.134,0,-364.739	1/1:266:2,264:2:72:264:9272:-827.606,-73.2373,0	0/1:272:132,140:132:4713:140:4978:-366.2,0,-342.449	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:348:0,348:0:0:348:12246:-1101.96,-104.758,0	1/1:105:0,105:0:0:105:3687:-332.024,-31.6082,0	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:369:194,175:194:6909:175:6161:-443.453,0,-510.778	1/1:98:0,98:0:0:98:3455:-311.161,-29.5009,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:29:18,11:18:648:11:392:-26.8893,0,-49.922	0/1:144:81,63:81:2895:63:2234:-157.97,0,-217.437	1/1:154:0,153:0:0:153:5309:-477.63,-46.0576,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:533:1,532:1:36:532:18821:-1689.86,-156.851,0	0/1:405:209,196:209:7431:196:6949:-503.374,0,-546.922	0/1:152:73,79:73:2606:79:2798:-206.281,0,-189.031	1/1:205:0,205:0:0:205:7222:-650.025,-61.7112,0	0/1:585:293,292:293:10398:292:10334:-753.772,0,-759.642	0/1:269:174,95:174:6185:95:3347:-220.462,0,-475.774	0/1:24:13,11:13:468:11:374:-26.7617,0,-35.2349	0/1:170:73,97:73:2585:97:3393:-254.41,0,-181.723	0/1:131:71,60:71:2532:60:2118:-151.452,0,-188.697	1/1:19:0,19:0:0:19:657:-59.4498,-5.71957,0	1/1:235:0,235:0:0:235:8184:-736.546,-70.7421,0	0/1:210:108,102:108:3880:102:3580:-259.189,0,-286.174	1/1:381:0,381:0:0:381:13440:-1208.58,-114.692,0	1/1:379:0,379:0:0:379:13493:-1214.09,-114.09,0	0/1:279:137,142:137:4899:142:5028:-368.678,0,-357.074	0/1:239:131,108:131:4677:108:3821:-272.135,0,-349.075	0/1:10:7,3:7:239:3:108:-7.06487,0,-18.8324	1/1:279:1,278:1:36:278:9812:-879.37,-80.3891,0	1/1:320:0,320:0:0:320:11237:-1010.95,-96.3296,0	0/1:594:263,331:263:9336:331:11725:-876.184,0,-661.4	1/1:158:0,158:0:0:158:5514:-496.302,-47.5627,0	1/1:81:0,81:0:0:81:2838:-255.656,-24.3834,0	1/1:151:0,151:0:0:151:5189:-467.14,-45.4555,0	0/1:207:98,109:98:3437:109:3777:-277.817,0,-247.231	0/1:73:36,37:36:1279:37:1323:-97.388,0,-93.4373	0/1:97:49,47:49:1752:47:1591:-114.214,0,-128.697	1/1:121:0,121:0:0:121:4248:-382.489,-36.4246,0	0/1:41:22,19:22:780:19:636:-45.2113,0,-58.1808	0/1:90:43,47:43:1500:47:1615:-118.527,0,-108.198	0/1:111:67,44:67:2363:44:1561:-107.279,0,-179.512	1/1:364:0,364:0:0:364:12859:-1157.14,-109.575,0	1/1:159:1,158:1:36:158:5500:-491.499,-44.2655,0
chr02	24652782	.	TCT	TT,TTT	93226.5	PASS	AB=0.467629,0.529746;ABP=23.8169,20.5797;AC=134,52;AF=0.72043,0.27957;AN=186;AO=3173,1221;CIGAR=1M1D1M,1M1X1M;DP=4401;DPB=3344.33;DPRA=0,1.2602;EPP=6893.09,2654.38;EPPR=0;GTI=0;LEN=1,1;MEANALT=1.70968,2.10169;MQM=59.3624,59.8657;MQMR=0;NS=93;NUMALT=2;ODDS=0.462446;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=36;PRO=1;QA=112574,43623;QR=0;RO=0;RPL=3173,1221;RPP=6893.09,2654.38;RPPR=0;RPR=0,0;RUN=1,1;SAF=3173,1221;SAP=6893.09,2654.38;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19,0:0:0:19,0:684,0:-61.8894,-5.71957,0,-61.8894,-5.71957,-61.8894	1/1:42:0,41,1:0:0:41,1:1445,36:-129.889,-12.3422,0,-126.951,-9.04499,-126.65	1/2:130:0,66,64:0:0:66,64:2364,2296:-380.372,-187.635,-167.767,-193.095,0,-173.829	1/1:179:0,177,2:0:0:177,2:6294,67:-566.099,-53.2823,0,-560.675,-47.5495,-560.073	1/2:27:0,10,17:0:0:10,17:341,608:-77.5104,-49.8782,-46.8679,-27.9788,0,-22.8613	1/2:13:0,5,8:0:0:5,8:180,288:-38.5453,-23.8592,-22.354,-15.046,0,-12.6377	1/2:34:0,10,24:0:0:10,24:356,855:-99.0605,-70.0455,-67.0352,-29.3709,0,-22.1462	1/2:56:0,23,33:0:0:23,33:806,1185:-162.533,-97.0245,-90.1008,-65.8619,0,-55.9279	1/2:29:0,14,15:0:0:14,15:504,540:-85.5394,-44.4211,-40.2067,-41.4781,0,-36.9627	1/2:54:0,32,22:0:0:32,22:1132,783:-156.188,-64.1703,-54.5373,-92.3727,0,-85.75	1/1:17:0,17,0:0:0:17,0:604,0:-54.6781,-5.11751,0,-54.6781,-5.11751,-54.6781	1/2:36:0,19,16:0:0:19,16:671,576:-101.633,-46.9953,-41.2758,-54.6349,0,-49.8184	1/1:30:0,30,0:0:0:30,0:1068,0:-96.4256,-9.0309,0,-96.4256,-9.0309,-96.4256	1/2:15:0,6,9:0:0:6,9:216,311:-43.2447,-25.6145,-23.8083,-17.9843,0,-15.2751	1/2:27:0,12,15:0:0:12,15:420,536:-78.2103,-44.0594,-40.447,-34.5039,0,-29.9885	1/2:15:0,10,5:0:0:10,5:356,165:-42.7009,-13.6685,-10.6582,-29.3709,0,-27.8658	1/1:8:0,8,0:0:0:8,0:275,0:-25.0821,-2.40824,0,-25.0821,-2.40824,-25.0821	1/1:12:0,12,0:0:0:12,0:424,0:-38.4955,-3.61236,0,-38.4955,-3.61236,-38.4955	1/1:10:0,10,0:0:0:10,0:356,0:-32.3341,-3.0103,0,-32.3341,-3.0103,-32.3341	1/2:65:0,32,33:0:0:32,33:1152,1184:-190.932,-96.9343,-87.3014,-94.3572,0,-84.4232	1/1:156:0,156,0:0:0:156,0:5541,0:-498.702,-46.9607,0,-498.702,-46.9607,-498.702	1/1:61:0,61,0:0:0:61,0:2162,0:-194.818,-18.3628,0,-194.818,-18.3628,-194.818	1/2:64:0,30,34:0:0:30,34:1063,1224:-186.808,-100.232,-91.2011,-86.9323,0,-76.6973	1/1:27:0,27,0:0:0:27,0:968,0:-87.3743,-8.12781,0,-87.3743,-8.12781,-87.3743	1/1:20:0,20,0:0:0:20,0:704,0:-63.6771,-6.0206,0,-63.6771,-6.0206,-63.6771	1/1:107:0,107,0:0:0:107,0:3806,0:-342.329,-32.2102,0,-342.329,-32.2102,-342.329	1/1:115:0,114,1:0:0:114,1:4038,36:-363.138,-34.3174,0,-360.203,-31.0228,-359.902	1/1:13:0,13,0:0:0:13,0:468,0:-42.4311,-3.91339,0,-42.4311,-3.91339,-42.4311	1/2:152:0,75,77:0:0:75,77:2673,2764:-443.702,-225.822,-203.245,-218.238,0,-195.059	1/2:58:0,25,33:0:0:25,33:884,1165:-167.213,-95.221,-87.6953,-72.3448,0,-62.4109	1/2:53:0,21,32:0:0:21,32:744,1148:-154.578,-93.9969,-87.6752,-60.9369,0,-51.3039	1/2:3:0,1,2:0:0:1,2:36,68:-8.79971,-5.85565,-5.55462,-3.29724,0,-2.69518	1/1:11:0,11,0:0:0:11,0:385,0:-34.9804,-3.31133,0,-34.9804,-3.31133,-34.9804	1/1:4:0,4,0:0:0:4,0:135,0:-12.4815,-1.20412,0,-12.4815,-1.20412,-12.4815	1/1:3:0,3,0:0:0:3,0:104,0:-9.70101,-0.90309,0,-9.70101,-0.90309,-9.70101	1/2:4:0,2,2:0:0:2,2:68,72:-11.7395,-6.23466,-5.6326,-5.85469,0,-5.25263	1/2:63:0,31,32:0:0:31,32:1112,1115:-181.694,-91.0208,-81.6889,-91.0267,0,-81.3938	1/2:57:0,29,28:0:0:29,28:1044,989:-166.025,-80.8932,-72.1633,-85.4881,0,-77.0592	1/2:18:0,13,5:0:0:13,5:468,180:-53.2145,-15.0469,-11.1335,-38.5273,0,-37.0222	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:63:0,63,0:0:0:63,0:2223,0:-200.303,-18.9649,0,-200.303,-18.9649,-200.303	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/2:75:0,31,44:0:0:31,44:1116,1568:-219.093,-128.149,-118.817,-91.3027,0,-78.0574	1/2:28:0,16,12:0:0:16,12:568,428:-81.5214,-35.2418,-30.4253,-46.6354,0,-43.023	1/2:23:0,15,8:0:0:15,8:536,288:-67.5596,-23.8592,-19.3437,-44.0594,0,-41.6511	1/1:35:0,35,0:0:0:35,0:1235,0:-111.453,-10.5361,0,-111.453,-10.5361,-111.453	1/2:36:0,19,16:0:0:19,16:658,572:-99.9146,-46.7595,-41.0399,-53.2667,0,-48.4502	1/2:100:0,46,54:0:0:46,54:1639,1944:-292.556,-158.98,-145.133,-133.933,0,-117.677	1/2:59:0,20,39:0:0:20,39:681,1400:-169.795,-114.559,-108.538,-55.5831,0,-43.8429	1/1:60:0,60,0:0:0:60,0:2141,0:-192.939,-18.0618,0,-192.939,-18.0618,-192.939	1/2:57:0,24,32:0:0:24,32:856,1148:-163.355,-93.5752,-86.3504,-69.8439,0,-60.211	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:63:0,63,0:0:0:63,0:2210,0:-198.983,-18.9649,0,-198.983,-18.9649,-198.983	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:8:0,5,3:0:0:5,3:176,108:-23.4898,-9.17208,-7.66693,-14.6745,0,-13.7715	1/2:90:0,32,57:0:0:32,57:1139,2031:-258.436,-165.651,-156.018,-92.887,0,-75.7283	1/1:21:0,21,0:0:0:21,0:748,0:-67.6276,-6.32163,0,-67.6276,-6.32163,-67.6276	1/2:8:0,3,5:0:0:3,5:108,171:-23.0393,-14.220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chr02	24652789	.	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chr02	24684889	.	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chr02	24684949	.	T	C	42686.7	PASS	AB=0.461098;ABP=78.7003;AC=50;AF=0.268817;AN=186;AO=2667;CIGAR=1X;DP=10675;DPB=10675;DPRA=0.984224;EPP=5794.33;EPPR=17186;GTI=1;LEN=1;MEANALT=1.27778;MQM=59.9869;MQMR=59.9862;NS=93;NUMALT=1;ODDS=1.08811;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94406;QR=284599;RO=7949;RPL=0;RPP=5794.33;RPPR=17142.7;RPR=2667;RUN=1;SAF=0;SAP=5794.33;SAR=2667;SRF=5;SRP=17220.6;SRR=7944;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:109:108,0:108:3857:0:0:0,-32.5112,-346.965	0/1:163:99,64:99:3532:64:2285:-156.843,0,-269.022	0/0:200:199,0:199:7132:0:0:0,-59.905,-641.307	0/0:55:50,5:50:1796:5:176:0,-0.37163,-145.733	0/1:44:31,13:31:1112:13:468:-29.2143,0,-87.146	0/1:125:67,55:67:2396:55:1960:-139.601,0,-178.825	0/1:135:68,67:68:2448:67:2335:-169.767,0,-179.935	0/1:128:82,46:82:2940:46:1621:-107.645,0,-226.302	0/1:123:64,59:64:2270:59:2100:-152.243,0,-167.532	0/0:116:112,0:112:4028:0:0:0,-33.7154,-362.347	0/1:125:71,54:71:2548:54:1900:-133.647,0,-191.942	0/0:108:106,0:106:3812:0:0:0,-31.9092,-342.916	0/1:120:61,58:61:2192:58:2062:-149.668,0,-161.363	0/1:79:47,32:47:1692:32:1118:-77.1446,0,-128.785	0/1:91:45,46:45:1620:46:1627:-119.324,0,-118.696	0/0:66:64,0:64:2292:0:0:0,-19.2659,-206.182	0/0:58:57,0:57:2052:0:0:0,-17.1587,-184.592	0/0:60:58,0:58:2061:0:0:0,-17.4597,-185.4	0/1:148:91,57:91:3260:57:2044:-139.679,0,-249.068	0/0:191:191,0:191:6856:0:0:0,-57.4967,-616.79	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/1:153:63,90:63:2244:90:3204:-242.298,0,-156.166	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/0:104:104,0:104:3702:0:0:0,-31.3071,-333.38	0/0:281:277,0:277:9932:0:0:0,-83.3853,-893.458	0/0:363:363,0:363:13013:0:0:0,-109.274,-1170.98	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:294:121,172:121:4332:172:6066:-457.486,0,-301.494	0/1:133:67,66:67:2404:66:2355:-172.171,0,-176.579	0/1:132:67,64:67:2392:64:2287:-166.296,0,-175.743	.:.:.:.:.:.:.:.	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:16:10,6:10:356:6:203:-13.7839,0,-27.5648	0/1:191:106,84:106:3812:84:2933:-206.647,0,-285.72	0/1:128:60,68:60:2133:68:2415:-179.075,0,-153.705	0/1:54:39,14:39:1385:14:485:-27.6635,0,-108.633	0/1:6:4,2:4:129:2:72:-5.03054,0,-10.1215	0/0:179:179,0:179:6387:0:0:0,-53.8844,-574.916	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/1:111:82,29:82:2917:29:1044:-60.8605,0,-229.35	0/1:89:45,39:45:1612:39:1392:-99.933,0,-119.724	0/1:72:31,40:31:1116:40:1396:-104.202,0,-79.0187	0/0:120:120,0:120:4285:0:0:0,-36.1236,-385.827	0/1:110:67,43:67:2385:43:1508:-102.898,0,-181.793	0/1:204:94,110:94:3361:110:3893:-289.154,0,-241.295	0/1:79:43,36:43:1548:36:1259:-89.828,0,-115.832	0/0:186:186,0:186:6681:0:0:0,-55.9916,-601.362	0/1:163:67,96:67:2404:96:3432:-260.023,0,-167.549	0/1:13:6,7:6:216:7:239:-17.9293,0,-15.8771	0/0:221:221,0:221:7814:0:0:0,-66.5276,-703.291	0/0:119:119,0:119:4257:0:0:0,-35.8226,-383.307	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:212:118,94:118:4240:94:3345:-237.448,0,-317.959	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:13:11,2:11:388:2:72:-2.92333,0,-31.344	0/1:138:91,47:91:3253:47:1638:-106.162,0,-251.447	0/0:122:118,1:118:4248:1:36:0,-32.5841,-378.898	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:151:151,0:151:5404:0:0:0,-45.4555,-486.491	0/1:211:107,104:107:3829:104:3697:-269.415,0,-281.288	0/1:86:44,42:44:1565:42:1504:-109.766,0,-115.251	0/0:132:132,0:132:4748:0:0:0,-39.736,-427.476	0/1:231:136,95:136:4872:95:3344:-231.639,0,-369.092	0/1:192:76,116:76:2717:116:4139:-314.897,0,-186.974	0/1:57:41,16:41:1468:16:552:-32.8442,0,-115.257	0/1:69:39,30:39:1396:30:1061:-75.0297,0,-105.168	0/1:68:35,29:35:1256:29:998:-70.5019,0,-93.7197	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:140:140,0:140:5009:0:0:0,-42.1442,-450.955	0/1:124:63,60:63:2260:60:2142:-155.66,0,-166.276	0/0:239:236,0:236:8453:0:0:0,-71.0431,-760.36	0/0:210:207,0:207:7390:0:0:0,-62.3132,-664.786	0/1:114:81,33:81:2889:33:1184:-72.5509,0,-225.928	0/1:163:82,81:82:2925:81:2891:-211.358,0,-214.416	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:150:146,4:146:5225:4:144:0,-31.8409,-457.073	0/0:127:127,0:127:4545:0:0:0,-38.2308,-409.215	0/1:242:124,114:124:4456:114:4046:-292.325,0,-329.204	0/0:72:68,2:68:2440:2:72:0,-14.5952,-213.01	0/0:92:91,0:91:3256:0:0:0,-27.3937,-292.901	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:133:59,74:59:2120:74:2629:-196.82,0,-151.031	0/1:25:13,12:13:468:12:423:-30.8793,0,-34.9339	0/1:108:56,52:56:2016:52:1828:-132.287,0,-149.202	0/0:89:89,0:89:3189:0:0:0,-26.7917,-287.231	0/1:72:54,16:54:1936:16:549:-28.3024,0,-153.085	0/1:172:107,63:107:3840:63:2202:-146.91,0,-294.071	0/1:84:32,52:32:1148:52:1815:-138.34,0,-78.3433	0/0:186:186,0:186:6660:0:0:0,-55.9916,-599.478	0/0:106:103,0:103:3700:0:0:0,-31.0061,-332.841
chr02	24721369	.	A	G	48759.4	PASS	AB=0.488009;ABP=10.457;AC=51;AF=0.271277;AN=188;AO=2921;CIGAR=1X;DP=11042;DPB=11042;DPRA=1.30104;EPP=6345.88;EPPR=17605;GTI=0;LEN=1;MEANALT=1.05085;MQM=59.9918;MQMR=59.9943;NS=94;NUMALT=1;ODDS=0.147491;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104406;QR=290535;RO=8114;RPL=2921;RPP=6345.88;RPPR=17605;RPR=0;RUN=1;SAF=0;SAP=6345.88;SAR=2921;SRF=0;SRP=17622.3;SRR=8114;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:331:331,0:331:11842:0:0:0,-99.6409,-1065.63	0/1:231:113,117:113:4068:117:4184:-307.255,0,-296.817	0/0:268:267,1:267:9530:1:36:0,-77.0778,-854.056	0/1:78:41,37:41:1472:37:1324:-95.9818,0,-109.296	0/1:95:34,61:34:1220:61:2188:-168.588,0,-81.509	0/1:165:83,82:83:2965:82:2935:-214.714,0,-217.412	0/1:154:77,76:77:2749:76:2728:-199.493,0,-201.381	0/1:165:100,65:100:3592:65:2326:-159.93,0,-273.816	0/1:124:75,49:75:2665:49:1741:-119.645,0,-202.767	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:96:63,33:63:2264:33:1180:-77.6092,0,-175.123	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.283	0/1:62:37,25:37:1306:25:900:-62.6572,0,-99.1761	0/1:105:59,46:59:2124:46:1646:-116.821,0,-159.82	0/1:63:44,19:44:1576:19:680:-42.5643,0,-123.167	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:247:95,152:95:3412:152:5451:-416.362,0,-232.939	0/0:194:192,2:192:6896:2:72:0,-51.5631,-613.868	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.828	0/1:70:35,35:35:1252:35:1244:-91.192,0,-91.913	0/0:139:139,0:139:4988:0:0:0,-41.8432,-449.067	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:398:397,1:397:14206:1:36:0,-116.212,-1274.7	0/0:293:292,0:292:10420:0:0:0,-87.9008,-937.36	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:429:233,196:233:8363:196:7024:-503.079,0,-623.53	0/1:96:52,44:52:1868:44:1562:-111.973,0,-139.5	0/1:136:56,80:56:2016:80:2850:-215.799,0,-140.773	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:237:111,126:111:3979:126:4515:-335.173,0,-286.955	0/1:131:72,59:72:2558:59:2112:-150.914,0,-191.032	0/1:75:31,44:31:1100:44:1580:-119.914,0,-76.733	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:176:175,1:175:6284:1:36:0,-49.383,-562.053	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:186:103,83:103:3704:83:2980:-212.44,0,-277.569	0/1:82:53,29:53:1908:29:1032:-68.509,0,-147.313	0/1:93:52,41:52:1860:41:1457:-103.429,0,-139.684	0/0:166:165,1:165:5916:1:36:0,-46.3727,-528.95	0/1:104:50,54:50:1788:54:1925:-142.219,0,-129.895	0/1:208:104,104:104:3724:104:3703:-270.859,0,-272.747	0/1:121:61,60:61:2188:60:2131:-155.633,0,-160.761	0/0:133:133,0:133:4780:0:0:0,-40.037,-430.352	0/1:134:76,58:76:2713:58:2076:-146.772,0,-204.074	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:206:206,0:206:7366:0:0:0,-62.0122,-662.985	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:175:57,118:57:2044:118:4205:-325.951,0,-131.552	0/0:74:73,1:73:2608:1:36:0,-18.6779,-231.37	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:94:54,40:54:1925:40:1421:-99.8886,0,-145.228	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:233:232,0:232:8315:0:0:0,-69.839,-748.145	0/1:210:117,93:117:4192:93:3335:-237.151,0,-314.245	0/1:81:27,54:27:968:54:1940:-150.493,0,-63.0539	0/0:142:142,0:142:5046:0:0:0,-42.7463,-454.286	0/1:208:108,100:108:3880:100:3569:-258.802,0,-286.779	0/1:121:50,70:50:1792:70:2470:-186.069,0,-125.079	0/1:23:15,8:15:532:8:284:-18.9797,0,-41.2894	0/1:70:38,32:38:1356:32:1152:-82.918,0,-101.268	0/1:94:58,36:58:2080:36:1296:-88.6471,0,-159.173	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:85:46,39:46:1652:39:1383:-99.1805,0,-123.381	0/0:142:141,0:141:5052:0:0:0,-42.4452,-454.614	0/0:264:264,0:264:9480:0:0:0,-79.4719,-853.155	0/1:116:60,56:60:2118:56:1996:-144.995,0,-155.966	0/1:177:90,87:90:3189:87:3092:-225.225,0,-233.949	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:183:183,0:183:6561:0:0:0,-55.0885,-590.569	0/0:158:158,0:158:5663:0:0:0,-47.5627,-509.78	0/1:326:184,142:184:6558:142:5078:-359.005,0,-491.794	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:71:70,0:70:2516:0:0:0,-21.0721,-226.479	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/1:148:67,81:67:2408:81:2907:-217.313,0,-172.424	0/1:51:26,25:26:936:25:892:-65.2472,0,-69.2069	0/1:90:51,39:51:1808:39:1392:-98.4863,0,-135.906	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:25:8,17:8:288:17:612:-47.8877,0,-18.7417	0/1:61:39,22:39:1404:22:788:-52.882,0,-108.296	0/1:69:20,49:20:720:49:1752:-137.193,0,-44.3577	0/0:211:210,1:210:7500:1:36:0,-59.9191,-671.444	0/0:134:131,3:131:4695:3:108:0,-30.2628,-412.634
chr02	24773135	.	T	G	48423.6	PASS	AB=0.477335;ABP=30.4725;AC=53;AF=0.281915;AN=188;AO=2944;CIGAR=1X;DP=11404;DPB=11404;DPRA=1.11172;EPP=6395.83;EPPR=18352;GTI=1;LEN=1;MEANALT=1.14035;MQM=59.5187;MQMR=59.9683;NS=94;NUMALT=1;ODDS=4.5798;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104885;QR=302693;RO=8450;RPL=2944;RPP=6395.83;RPPR=18343.3;RPR=0;RUN=1;SAF=2944;SAP=6395.83;SAR=0;SRF=8449;SRP=18343.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:72:72,0:72:2588:0:0:0,-21.6742,-232.979	0/0:171:171,0:171:6117:0:0:0,-51.4761,-550.624	0/1:126:86,40:86:3083:40:1431:-91.0855,0,-239.767	0/0:331:331,0:331:11855:0:0:0,-99.6409,-1066.6	0/1:80:45,35:45:1604:35:1235:-87.3262,0,-120.568	0/1:80:52,28:52:1863:28:1008:-66.954,0,-143.862	0/1:200:115,85:115:4132:85:3039:-213.499,0,-311.851	0/1:127:47,80:47:1669:80:2868:-220.09,0,-112.265	0/1:152:58,94:58:2059:94:3335:-254.436,0,-139.824	0/1:104:55,49:55:1972:49:1733:-124.932,0,-146.448	0/0:49:49,0:49:1736:0:0:0,-14.7505,-156.522	0/1:61:27,34:27:945:34:1220:-91.7082,0,-66.9994	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:59:26,33:26:920:33:1178:-88.5424,0,-65.3563	0/1:77:34,42:34:1220:42:1504:-112.403,0,-86.8687	0/1:48:22,26:22:788:26:920:-68.6452,0,-56.7954	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.114	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:373:189,183:189:6780:183:6520:-474.286,0,-497.701	0/0:205:202,3:202:7243:3:108:0,-51.636,-641.844	0/0:216:216,0:216:7748:0:0:0,-65.0225,-697.35	0/1:134:52,82:52:1848:82:2927:-223.256,0,-126.262	0/0:149:149,0:149:5326:0:0:0,-44.8535,-479.473	0/0:129:129,0:129:4623:0:0:0,-38.8329,-416.21	0/0:509:505,1:505:18074:1:36:0,-149.079,-1622.67	0/0:262:261,0:261:9354:0:0:0,-78.5688,-841.439	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:368:211,157:211:7562:157:5603:-393.576,0,-569.838	0/1:226:116,110:116:4139:110:3905:-283.587,0,-304.659	0/1:180:79,101:79:2832:101:3601:-270.069,0,-200.933	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:195:97,97:97:3488:97:3437:-250.76,0,-255.37	0/1:233:125,108:125:4477:108:3844:-275.893,0,-332.957	0/1:30:17,13:17:608:13:464:-33.0666,0,-46.0211	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:217:217,0:217:7780:0:0:0,-65.3235,-700.181	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:160:107,53:107:3835:53:1900:-123.091,0,-297.181	0/1:80:48,32:48:1728:32:1135:-78.3556,0,-131.723	0/1:50:22,28:22:788:28:1008:-75.9711,0,-56.1933	0/0:174:173,1:173:6192:1:36:0,-48.7809,-553.777	0/1:162:84,78:84:3012:78:2774:-200.581,0,-222.544	0/1:165:96,69:96:3456:69:2468:-172.676,0,-261.581	0/1:185:113,72:113:4042:72:2555:-174.477,0,-308.276	0/0:135:135,0:135:4830:0:0:0,-40.639,-434.854	0/1:182:91,91:91:3272:91:3247:-237.626,0,-239.912	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:153:153,0:153:5500:0:0:0,-46.0576,-495.124	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/1:18:9,9:9:320:9:324:-24.0512,0,-23.7238	0/1:188:101,87:101:3591:87:3097:-222.363,0,-266.802	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:20:17,3:17:612:3:104:-3.68221,0,-49.3928	0/1:76:35,40:35:1252:40:1419:-104.98,0,-90.0481	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:307:307,0:307:10985:0:0:0,-92.4162,-988.544	0/1:234:141,92:141:5072:92:3255:-222.391,0,-386.122	0/1:61:36,25:36:1292:25:896:-62.5705,0,-98.2209	0/0:142:142,0:142:5093:0:0:0,-42.7463,-458.51	0/1:252:136,116:136:4888:116:4147:-297.507,0,-364.21	0/1:178:67,110:67:2383:110:3929:-300.071,0,-161.072	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	0/1:73:33,40:33:1175:40:1410:-105.141,0,-84.0818	0/1:84:49,35:49:1760:35:1252:-87.1913,0,-133.397	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/0:103:103,0:103:3682:0:0:0,-31.0061,-331.582	0/1:60:36,24:36:1296:24:860:-59.66,0,-98.8821	0/0:233:233,0:233:8314:0:0:0,-70.14,-748.268	0/0:222:222,0:222:7980:0:0:0,-66.8287,-718.217	0/1:90:35,55:35:1256:55:1937:-147.463,0,-86.251	0/1:99:47,52:47:1692:52:1856:-137.48,0,-122.765	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/0:163:163,0:163:5836:0:0:0,-49.0679,-525.35	0/0:153:153,0:153:5496:0:0:0,-46.0576,-494.76	0/1:339:207,132:207:7431:132:4720:-322.428,0,-566.78	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:85:85,0:85:3042:0:0:0,-25.5875,-274.008	0/1:137:60,77:60:2148:77:2733:-204.93,0,-152.346	0/1:62:32,30:32:1152:30:1068:-77.7242,0,-85.3263	0/1:80:38,42:38:1364:42:1500:-110.895,0,-98.9783	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.853	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	0/1:81:40,41:40:1403:41:1440:-105.51,0,-102.18	0/1:69:17,52:17:612:52:1851:-146.071,0,-34.6424	0/0:157:156,1:156:5580:1:36:0,-43.6634,-497.668	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.868
chr02	24773233	.	C	T	199636	PASS	AB=0.516861;ABP=21.3906;AC=135;AF=0.718085;AN=188;AO=9650;CIGAR=1X;DP=13252;DPB=13252;DPRA=0;EPP=20957.7;EPPR=7811.63;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.4336;MQMR=59.639;NS=94;NUMALT=1;ODDS=12.1573;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=344629;QR=128282;RO=3596;RPL=9650;RPP=20957.7;RPPR=7811.63;RPR=0;RUN=1;SAF=0;SAP=20957.7;SAR=9650;SRF=0;SRP=7811.63;SRR=3596;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:162:1,161:1:36:161:5711:-509.87,-45.2,0	0/1:163:94,69:94:3376:69:2472:-173.525,0,-254.968	1/1:363:0,363:0:0:363:12923:-1162.47,-109.274,0	0/1:69:38,31:38:1337:31:1108:-79.2315,0,-99.7998	0/1:81:30,51:30:1080:51:1820:-139.669,0,-73.0435	0/1:272:121,150:121:4279:150:5312:-396.066,0,-302.654	0/1:238:138,100:138:4933:100:3557:-247.61,0,-372.364	0/1:118:54,63:54:1940:63:2264:-168.414,0,-139.243	0/1:55:21,34:21:752:34:1216:-93.1615,0,-51.3945	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	0/1:101:51,50:51:1813:50:1784:-130.382,0,-132.887	1/1:89:0,89:0:0:89:3192:-287.486,-26.7917,0	0/1:96:42,54:42:1493:54:1940:-145.964,0,-105.655	0/1:68:31,37:31:1104:37:1313:-98.0005,0,-79.1983	0/1:71:35,36:35:1211:36:1292:-95.1822,0,-87.9129	1/1:76:0,76:0:0:76:2720:-244.963,-22.8783,0	1/1:83:0,83:0:0:83:2984:-268.791,-24.9855,0	1/1:39:0,39:0:0:39:1385:-124.93,-11.7402,0	0/1:389:179,209:179:6386:209:7433:-550.51,0,-457.495	1/1:213:0,213:0:0:213:7583:-681.656,-64.1194,0	1/1:217:0,217:0:0:217:7777:-699.755,-65.3235,0	0/1:100:61,39:61:2177:39:1389:-95.2039,0,-166.08	1/1:91:0,91:0:0:91:3234:-291.226,-27.3937,0	1/1:99:0,99:0:0:99:3537:-318.407,-29.802,0	1/1:464:0,464:0:0:464:16613:-1494.4,-139.678,0	1/1:299:1,298:1:36:298:10661:-955.534,-86.4097,0	1/1:30:1,29:1:36:29:1040:-90.2927,-5.43263,0	0/1:566:257,309:257:9197:309:11025:-821.205,0,-657.293	0/1:167:78,89:78:2800:89:3181:-236.156,0,-201.962	0/1:143:76,67:76:2728:67:2404:-173.287,0,-202.712	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9895	1/1:63:0,63:0:0:63:2264:-203.937,-18.9649,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:37:0,37:0:0:37:1313:-118.356,-11.1381,0	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:252:122,130:122:4337:130:4664:-344.004,0,-314.619	0/1:302:156,146:156:5574:146:5213:-377.789,0,-410.861	0/1:83:47,36:47:1684:36:1291:-91.5067,0,-126.544	0/1:7:4,3:4:144:3:108:-7.93859,0,-11.2064	1/1:213:0,213:0:0:213:7628:-685.455,-64.1194,0	1/1:34:0,34:0:0:34:1205:-108.696,-10.235,0	0/1:161:78,83:78:2778:83:2968:-218.83,0,-201.468	0/1:92:56,36:56:2000:36:1284:-88.1653,0,-152.576	0/1:53:28,25:28:996:25:890:-64.1645,0,-73.9956	1/1:167:0,167:0:0:167:5926:-533.428,-50.272,0	0/1:230:101,129:101:3609:129:4628:-346.514,0,-255.029	0/1:274:119,155:119:4234:155:5556:-416.987,0,-298.316	0/1:191:93,98:93:3321:98:3520:-259.371,0,-241.604	1/1:188:0,188:0:0:188:6703:-602.92,-56.5936,0	0/1:177:90,87:90:3220:87:3093:-225.214,0,-236.736	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	1/1:178:1,177:1:36:177:6311:-564.359,-49.9851,0	1/1:76:0,76:0:0:76:2716:-244.655,-22.8783,0	0/1:47:21,26:21:756:26:932:-70.0505,0,-53.8998	0/1:279:127,151:127:4533:151:5362:-398.449,0,-324.088	1/1:41:0,41:0:0:41:1457:-131.34,-12.3422,0	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/1:27:8,19:8:284:19:680:-53.4014,0,-17.7755	0/1:86:53,33:53:1870:33:1176:-80.1624,0,-142.685	1/1:133:0,133:0:0:133:4751:-427.428,-40.037,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:322:0,322:0:0:322:11505:-1035,-96.9317,0	0/1:236:88,148:88:3137:148:5276:-403.601,0,-211.499	0/1:58:35,23:35:1240:23:817:-56.391,0,-94.3855	1/1:161:0,161:0:0:161:5721:-513.039,-48.4658,0	0/1:322:129,193:129:4605:193:6909:-524.175,0,-317.418	0/1:124:80,44:80:2868:44:1572:-104.348,0,-221.024	0/1:38:24,14:24:864:14:504:-34.259,0,-66.6434	0/1:133:48,85:48:1720:85:3003:-230.403,0,-115.045	0/1:113:49,64:49:1748:64:2284:-171.749,0,-123.575	1/1:39:0,39:0:0:39:1381:-124.26,-11.7402,0	1/1:243:0,242:0:0:242:8617:-773.095,-72.8493,0	0/1:97:48,49:48:1686:49:1764:-129.844,0,-122.805	1/1:248:0,248:0:0:248:8834:-792.774,-74.6554,0	1/1:239:0,239:0:0:239:8483:-762.23,-71.9462,0	0/1:182:75,107:75:2665:107:3821:-289.157,0,-185.216	0/1:122:70,52:70:2508:52:1864:-131.086,0,-189.155	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2387	1/1:161:0,161:0:0:161:5788:-519.975,-48.4658,0	1/1:222:0,222:0:0:222:7952:-715.365,-66.8287,0	0/1:450:222,228:222:7869:228:8125:-595.43,0,-572.61	1/1:116:0,116:0:0:116:4168:-375.132,-34.9195,0	1/1:74:0,74:0:0:74:2652:-238.813,-22.2762,0	1/1:99:0,99:0:0:99:3564:-320.84,-29.802,0	0/1:142:70,72:70:2512:72:2592:-190.614,0,-183.579	0/1:51:27,24:27:964:24:849:-61.3753,0,-71.7212	0/1:79:42,37:42:1504:37:1328:-95.9987,0,-111.817	1/1:87:0,87:0:0:87:3112:-280.242,-26.1896,0	0/1:72:30,42:30:1080:42:1496:-113.243,0,-75.8187	0/1:131:62,69:62:2202:69:2477:-183.567,0,-158.998	0/1:72:49,23:49:1760:23:820:-52.3922,0,-137.006	1/1:207:0,206:0:0:206:7384:-664.076,-62.0122,0	1/1:140:0,140:0:0:140:5002:-450.182,-42.1442,0
chr02	24847822	.	C	A	49849.2	PASS	AB=0.537157;ABP=65.9449;AC=56;AF=0.297872;AN=188;AO=2848;CIGAR=1X;DP=9372;DPB=9372;DPRA=0.993756;EPP=6118.07;EPPR=14011.6;GTI=0;LEN=1;MEANALT=1.07018;MQM=59.5207;MQMR=59.6564;NS=94;NUMALT=1;ODDS=0.601809;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102068;QR=233403;RO=6519;RPL=8;RPP=6118.07;RPPR=14011.6;RPR=2840;RUN=1;SAF=2848;SAP=6187.36;SAR=0;SRF=6519;SRP=14158.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5477	0/0:131:130,1:130:4624:1:36:0,-35.8367,-412.466	0/1:129:79,50:79:2828:50:1796:-122.853,0,-215.836	0/0:143:143,0:143:5115:0:0:0,-43.0473,-460.413	0/1:81:28,53:28:1004:53:1904:-147.125,0,-66.2761	0/1:29:9,20:9:324:20:712:-55.6768,0,-20.776	0/1:102:46,56:46:1652:56:2016:-150.993,0,-118.242	0/1:168:91,77:91:3238:77:2764:-198.402,0,-241.056	0/1:130:63,66:63:2255:66:2361:-173.524,0,-164.02	0/1:154:68,86:68:2426:86:3081:-231.12,0,-172.236	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.433	0/1:92:47,45:47:1680:45:1620:-118.342,0,-123.773	0/1:72:37,34:37:1324:34:1217:-88.0991,0,-97.7163	0/1:75:48,27:48:1724:27:972:-65.2125,0,-132.827	0/1:66:34,32:34:1216:32:1152:-84.1222,0,-89.8656	0/1:64:26,38:26:936:38:1368:-104.138,0,-65.2935	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.057	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.181	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:211:111,100:111:3980:100:3588:-259.174,0,-294.779	0/0:118:118,0:118:4202:0:0:0,-35.5215,-378.357	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.777	0/1:71:41,30:41:1472:30:1080:-76.1355,0,-111.392	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.053	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.39	0/0:415:415,0:415:14852:0:0:0,-124.927,-1336.34	0/0:250:250,0:250:8933:0:0:0,-75.2575,-803.555	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:373:184,188:184:6603:188:6730:-493.422,0,-481.853	0/1:90:31,59:31:1104:59:2124:-164.141,0,-72.5694	0/1:113:61,52:61:2184:52:1860:-133.662,0,-162.797	1/1:4:0,4:0:0:4:144:-13.3052,-1.20412,0	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0356	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:216:107,109:107:3825:109:3898:-285.8,0,-279.397	0/1:159:97,62:97:3458:62:2217:-151.896,0,-263.527	0/1:70:32,38:32:1148:38:1368:-102.285,0,-82.5392	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49024	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.212	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.17	0/1:116:42,74:42:1504:74:2649:-203.734,0,-100.735	0/1:89:35,54:35:1252:54:1917:-145.99,0,-86.1828	0/1:90:42,48:42:1512:48:1728:-128.624,0,-109.25	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.339	0/1:130:58,72:58:2079:72:2581:-193.311,0,-148.245	0/1:165:66,99:66:2368:99:3517:-266.727,0,-163.667	0/1:147:58,89:58:2075:89:3185:-242.577,0,-142.736	0/0:283:282,0:282:10086:0:0:0,-84.8905,-907.134	0/1:141:46,95:46:1656:95:3405:-264.215,0,-106.873	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/0:134:134,0:134:4788:0:0:0,-40.338,-431.062	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.633	1/1:24:2,22:2:72:22:792:-64.7689,-0.387998,0	0/1:97:57,40:57:2036:40:1440:-100.693,0,-154.312	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7755	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:54:23,31:23:828:31:1116:-84.4833,0,-58.587	0/0:105:105,0:105:3763:0:0:0,-31.6081,-338.853	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2466	0/0:211:211,0:211:7572:0:0:0,-63.5173,-681.266	0/1:199:78,121:78:2800:121:4318:-328.832,0,-192.303	0/1:44:18,26:18:648:26:934:-71.1206,0,-45.4066	0/0:110:110,0:110:3930:0:0:0,-33.1133,-353.67	0/1:137:67,69:67:2408:69:2479:-182.081,0,-175.677	0/1:78:22,56:22:788:56:2006:-157.329,0,-47.7561	0/1:24:11,13:11:392:13:453:-33.8422,0,-28.3953	0/1:63:29,34:29:1040:34:1220:-90.5026,0,-74.9433	0/1:100:54,46:54:1931:46:1652:-118.865,0,-143.949	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:62:62,0:62:2223:0:0:0,-18.6639,-200.19	0/1:76:27,49:27:968:49:1721:-132.257,0,-64.5591	0/0:117:117,0:117:4181:0:0:0,-35.2205,-376.451	0/0:166:166,0:166:5948:0:0:0,-49.971,-535.386	0/1:102:45,57:45:1620:57:2044:-153.309,0,-115.35	0/1:113:52,61:52:1851:61:2192:-163.464,0,-132.851	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:133:133,0:133:4766:0:0:0,-40.037,-429.083	0/0:132:132,0:132:4698:0:0:0,-39.736,-422.895	0/1:220:56,164:56:1992:164:5890:-463.874,0,-113.304	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.871	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.469	0/0:147:147,0:147:5259:0:0:0,-44.2514,-473.174	0/1:178:81,97:81:2891:97:3484:-260.151,0,-206.831	0/1:50:31,19:31:1116:19:684:-46.7327,0,-85.694	0/1:104:51,53:51:1828:53:1908:-140.606,0,-133.478	0/0:120:119,1:119:4276:1:36:0,-32.5322,-380.379	0/1:36:23,13:23:828:13:468:-31.6226,0,-63.9907	0/1:61:37,24:37:1328:24:864:-59.6788,0,-101.441	0/1:115:38,77:38:1368:77:2765:-213.904,0,-88.7902	0/0:142:141,1:141:5064:1:36:0,-39.148,-452.257	0/0:129:129,0:129:4632:0:0:0,-38.8329,-417.037
chr02	24847861	.	C	G	130916	PASS	AB=0.460624;ABP=72.0978;AC=132;AF=0.702128;AN=188;AO=6346;CIGAR=1X;DP=9145;DPB=9145;DPRA=24.5726;EPP=13783.2;EPPR=6065.76;GTI=0;LEN=1;MEANALT=1.07527;MQM=59.6645;MQMR=59.6067;NS=94;NUMALT=1;ODDS=0.88864;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226170;QR=98704;RO=2792;RPL=6329;RPP=13635.9;RPPR=6057.08;RPR=17;RUN=1;SAF=6329;SAP=13635.9;SAR=17;SRF=2791;SRP=6057.08;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1027:-92.7397,-8.72987,0	1/1:128:1,127:1:36:127:4532:-404.105,-34.9336,0	0/1:130:52,78:52:1830:78:2796:-212.656,0,-125.609	1/1:140:0,140:0:0:140:4995:-449.659,-42.1442,0	0/1:80:53,27:53:1855:27:950:-61.7218,0,-143.014	0/1:29:20,9:20:699:9:324:-20.776,0,-54.5026	0/1:100:55,45:55:1971:45:1616:-115.598,0,-147.546	0/1:162:74,88:74:2586:88:3135:-233.597,0,-184.207	0/1:121:63,58:63:2221:58:2064:-149.6,0,-163.706	0/1:149:83,66:83:2920:66:2348:-166.726,0,-218.169	1/1:54:0,54:0:0:54:1908:-171.961,-16.2556,0	0/1:90:43,47:43:1511:47:1676:-124.015,0,-109.134	0/1:70:34,36:34:1180:36:1266:-93.1552,0,-85.4208	0/1:71:26,45:26:924:45:1600:-122.876,0,-62.0964	0/1:65:31,34:31:1116:34:1207:-89.3646,0,-81.1847	0/1:64:38,26:38:1343:26:923:-64.1208,0,-101.893	1/1:97:0,97:0:0:97:3476:-313.025,-29.1999,0	1/1:79:0,79:0:0:79:2822:-254.206,-23.7814,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/1:205:95,109:95:3392:109:3895:-288.886,0,-243.089	1/1:118:0,118:0:0:118:4220:-379.97,-35.5215,0	1/1:109:0,109:0:0:109:3878:-349.202,-32.8123,0	0/1:69:29,40:29:1007:40:1428:-108.036,0,-70.1656	1/1:44:0,44:0:0:44:1584:-142.661,-13.2453,0	1/1:52:1,51:1:36:51:1817:-160.201,-12.0553,0	1/1:403:0,402:0:0:402:14325:-1288.61,-121.014,0	1/1:241:0,241:0:0:241:8618:-775.325,-72.5482,0	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	0/1:366:183,183:183:6505:183:6522:-476.853,0,-475.354	0/1:89:57,31:57:2026:31:1108:-73.1728,0,-155.572	0/1:109:49,60:49:1748:60:2125:-158.687,0,-124.791	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9362	1/1:15:0,15:0:0:15:531:-48.1137,-4.51545,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:214:107,107:107:3798:107:3808:-278.479,0,-277.569	0/1:152:60,92:60:2098:92:3270:-248.739,0,-143.311	0/1:66:37,29:37:1309:29:1031:-73.2161,0,-98.1948	0/1:4:1,3:1:36:3:104:-8.49024,0,-2.39415	1/1:93:0,93:0:0:93:3308:-297.938,-27.9958,0	1/1:37:0,37:0:0:37:1332:-120.17,-11.1381,0	0/1:111:70,41:70:2492:41:1460:-98.2817,0,-191.119	0/1:86:54,32:54:1902:32:1152:-78.0909,0,-145.544	0/1:86:46,40:46:1611:40:1427:-102.806,0,-119.385	1/1:35:0,35:0:0:35:1229:-110.902,-10.5361,0	0/1:125:71,53:71:2498:53:1887:-132.421,0,-187.296	0/1:161:99,62:99:3504:62:2216:-151.215,0,-266.76	0/1:144:88,56:88:3060:56:2000:-136.893,0,-232.272	1/1:277:0,277:0:0:277:9849:-886.182,-83.3853,0	0/1:139:93,46:93:3307:46:1643:-106.306,0,-256.005	0/1:12:2,10:2:72:10:352:-28.4058,0,-3.22436	1/1:131:0,130:0:0:130:4643:-417.666,-39.1339,0	1/1:32:0,32:0:0:32:1144:-103.246,-9.63296,0	0/0:24:22,2:22:784:2:72:0,-0.387997,-64.0472	0/1:94:38,56:38:1331:56:2008:-152.697,0,-91.7922	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	0/1:10:4,6:4:144:6:216:-16.7755,0,-10.3033	0/1:17:7,10:7:244:10:360:-27.6268,0,-17.1819	0/1:52:30,22:30:1044:22:784:-55.2288,0,-78.6034	1/1:101:0,101:0:0:101:3608:-324.912,-30.404,0	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	1/1:207:0,207:0:0:207:7388:-664.906,-62.3132,0	0/1:195:118,77:118:4187:77:2743:-188.38,0,-318.224	0/1:42:26,16:26:920:16:568:-38.8086,0,-70.4623	1/1:110:0,110:0:0:110:3893:-350.235,-33.1133,0	0/1:130:66,64:66:2328:64:2289:-167.087,0,-170.637	0/1:78:56,22:56:1967:22:761:-45.3133,0,-153.815	0/1:24:12,12:12:419:12:419:-30.818,0,-30.8075	0/1:63:35,28:35:1260:28:1000:-71.3443,0,-94.1014	0/1:100:49,51:49:1718:51:1832:-135.047,0,-124.799	1/1:23:0,23:0:0:23:820:-74.1216,-6.92369,0	1/1:58:0,58:0:0:58:2076:-186.781,-17.4597,0	0/1:74:45,29:45:1591:29:1029:-70.6362,0,-121.182	1/1:113:0,113:0:0:113:4017:-361.702,-34.0164,0	1/1:165:0,165:0:0:165:5896:-530.705,-49.67,0	0/1:99:55,44:55:1963:44:1576:-112.312,0,-147.117	0/1:114:63,51:63:2239:51:1807:-128.592,0,-167.391	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:131:0,131:0:0:131:4659:-419.462,-39.4349,0	1/1:130:0,130:0:0:130:4574:-411.81,-39.1339,0	0/1:218:161,57:161:5695:57:2032:-117.507,0,-447.029	1/1:122:0,122:0:0:122:4347:-391.305,-36.7257,0	1/1:65:0,65:0:0:65:2324:-209.273,-19.567,0	1/1:141:0,141:0:0:141:5034:-453.067,-42.4452,0	0/1:176:96,80:96:3398:80:2851:-203.73,0,-253.017	0/1:51:20,31:20:716:31:1103:-84.2265,0,-49.3009	0/1:102:53,49:53:1866:49:1755:-127.515,0,-137.469	1/1:114:0,113:0:0:113:4021:-361.665,-34.0164,0	0/1:37:14,23:14:496:23:824:-63.3288,0,-33.8362	0/1:59:23,36:23:828:36:1288:-98.4358,0,-57.0506	0/1:115:77,37:77:2725:37:1332:-85.4929,0,-209.702	1/1:134:1,133:1:36:133:4734:-422.585,-36.7397,0	1/1:123:0,123:0:0:123:4399:-396.079,-37.0267,0
chr02	24958771	.	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chr02	25014401	.	G	A	46101.3	PASS	AB=0.50338;ABP=3.55347;AC=54;AF=0.287234;AN=188;AO=2766;CIGAR=1X;DP=9417;DPB=9417;DPRA=1.28945;EPP=6009.3;EPPR=14386.9;GTI=1;LEN=1;MEANALT=1.03448;MQM=59.9277;MQMR=59.9862;NS=94;NUMALT=1;ODDS=1.82286;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98163;QR=237577;RO=6648;RPL=0;RPP=6009.3;RPPR=14386.9;RPR=2766;RUN=1;SAF=2766;SAP=6009.3;SAR=0;SRF=6648;SRP=14439;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:222:93,129:93:3315:129:4604:-347.697,0,-231.74	0/0:177:177,0:177:6305:0:0:0,-53.2823,-567.545	0/1:49:15,34:15:540:34:1216:-94.9961,0,-34.1861	0/1:42:17,25:17:604:25:896:-68.3171,0,-42.0473	0/1:65:39,26:39:1392:26:917:-63.2777,0,-106.012	0/1:87:35,52:35:1256:52:1860:-141.476,0,-87.1557	0/1:77:34,43:34:1220:43:1540:-115.714,0,-86.9193	0/1:72:40,32:40:1432:32:1148:-81.9557,0,-107.503	0/0:92:92,0:92:3274:0:0:0,-27.6948,-294.88	0/1:114:54,60:54:1931:60:2135:-158.1,0,-139.748	0/1:203:111,92:111:3963:92:3207:-227.719,0,-295.752	0/1:132:58,74:58:2064:74:2656:-199.55,0,-146.295	0/1:81:46,35:46:1644:35:1237:-87.2489,0,-123.865	0/1:79:36,43:36:1296:43:1540:-115.112,0,-93.1626	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/0:37:37,0:37:1291:0:0:0,-11.1381,-116.487	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:136:67,69:67:2382:69:2371:-172.702,0,-173.694	0/0:101:100,1:100:3584:1:36:0,-26.8058,-319.168	0/0:131:131,0:131:4692:0:0:0,-39.4349,-422.44	0/1:90:42,48:42:1495:48:1705:-126.641,0,-107.751	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.318	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.517	0/0:179:178,0:178:6361:0:0:0,-53.5833,-572.22	0/0:198:197,1:197:7064:1:36:0,-56.0057,-632.221	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:261:121,140:121:4320:140:4973:-369.151,0,-310.406	0/1:124:67,57:67:2392:57:2021:-144.833,0,-178.21	0/1:73:44,29:44:1580:29:1036:-71.5787,0,-120.516	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:14:5,9:5:180:9:316:-24.5639,0,-12.3376	0/1:200:100,100:100:3563:100:3554:-259.861,0,-260.673	0/1:138:78,60:78:2777:60:2148:-151.025,0,-208.628	0/1:93:54,39:54:1920:39:1396:-97.9433,0,-145.081	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:99:99,0:99:3551:0:0:0,-29.802,-319.797	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/1:174:68,106:68:2423:106:3804:-290.178,0,-165.946	0/1:48:27,21:27:959:21:752:-53.5568,0,-72.176	0/1:86:45,41:45:1595:41:1468:-106.528,0,-117.951	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:117:45,72:45:1612:72:2542:-193.808,0,-110.15	0/1:269:130,138:130:4625:138:4924:-362.267,0,-335.376	0/1:192:107,85:107:3844:85:2985:-211.083,0,-288.357	0/0:138:138,0:138:4936:0:0:0,-41.5421,-444.368	0/1:157:104,53:104:3705:53:1900:-123.987,0,-286.39	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:179:178,1:178:6372:1:36:0,-50.2861,-569.972	0/0:85:85,0:85:3029:0:0:0,-25.5875,-272.839	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:190:95,95:95:3366:95:3264:-236.653,0,-245.96	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:118:61,57:61:2192:57:2028:-147.271,0,-162.024	0/0:143:142,1:142:5069:1:36:0,-39.449,-452.756	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:257:256,1:256:9176:1:36:0,-73.7664,-822.184	0/0:169:169,0:169:6064:0:0:0,-50.8741,-545.861	0/1:55:34,21:34:1208:21:726:-49.0993,0,-92.4694	0/0:97:97,0:97:3452:0:0:0,-29.1999,-310.892	0/1:104:46,58:46:1652:58:2014:-150.205,0,-117.658	0/1:210:68,142:68:2440:142:5070:-393.226,0,-156.639	0/1:52:28,24:28:1000:24:856:-61.7075,0,-74.6618	0/1:58:30,28:30:1080:28:1000:-72.8556,0,-80.0535	0/1:73:36,37:36:1292:37:1324:-97.4869,0,-94.6086	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2068	0/0:167:167,0:167:5964:0:0:0,-50.272,-536.841	0/1:124:104,19:104:3710:19:668:-23.0596,0,-296.715	0/0:152:152,0:152:5447:0:0:0,-45.7566,-490.34	0/0:163:163,0:163:5831:0:0:0,-49.0679,-524.902	0/1:156:64,92:64:2291:92:3239:-244.741,0,-159.49	0/1:94:50,44:50:1788:44:1572:-113.475,0,-132.906	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/0:135:135,0:135:4844:0:0:0,-40.639,-436.113	0/0:97:97,0:97:3464:0:0:0,-29.1999,-311.971	0/1:216:120,96:120:4288:96:3356:-237.233,0,-321.076	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.443	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:127:61,66:61:2196:66:2364:-174.788,0,-159.674	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	0/1:66:36,30:36:1292:30:1068:-76.5641,0,-96.7158	0/0:82:82,0:82:2923:0:0:0,-24.6845,-263.305	0/1:74:32,42:32:1136:42:1485:-111.666,0,-80.2727	0/1:225:106,119:106:3785:119:4262:-316.025,0,-273.116	0/1:63:26,37:26:936:37:1324:-100.497,0,-65.4042	0/0:115:115,0:115:4089:0:0:0,-34.6184,-368.197	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.472
chr02	25014425	.	A	C	136041	PASS	AB=0.492101;ABP=6.02931;AC=134;AF=0.712766;AN=188;AO=6695;CIGAR=1X;DP=9543;DPB=9543;DPRA=17.0914;EPP=14515;EPPR=6167.82;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9827;MQMR=59.942;NS=94;NUMALT=1;ODDS=0.826469;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237685;QR=101761;RO=2843;RPL=6692;RPP=14515;RPPR=6167.82;RPR=3;RUN=1;SAF=6695;SAP=14541;SAR=0;SRF=2843;SRP=6176.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1667:-150.315,-14.1484,0	1/1:53:0,53:0:0:53:1875:-169.025,-15.9546,0	0/1:227:131,96:131:4689:96:3414:-239.141,0,-353.835	1/1:183:0,183:0:0:183:6478:-583.109,-55.0885,0	0/1:50:35,15:35:1256:15:540:-33.885,0,-98.2938	0/1:43:25,18:25:900:18:629:-43.9895,0,-68.3767	0/1:69:29,40:29:1040:40:1402:-105.705,0,-73.1433	0/1:90:53,37:53:1900:37:1318:-91.8264,0,-144.171	0/1:75:42,33:42:1508:33:1172:-83.2084,0,-113.437	0/1:73:33,40:33:1184:40:1424:-106.482,0,-84.8931	1/1:98:0,98:0:0:98:3481:-313.499,-29.5009,0	0/1:115:62,53:62:2224:53:1852:-132.337,0,-165.806	0/1:213:102,111:102:3629:111:3909:-287.886,0,-262.418	0/1:131:74,57:74:2656:57:2022:-142.817,0,-199.851	0/1:83:35,48:35:1237:48:1716:-129.74,0,-86.6468	0/1:81:44,37:44:1569:37:1298:-92.7351,0,-117.116	1/1:50:0,50:0:0:50:1745:-157.329,-15.0515,0	1/1:37:0,37:0:0:37:1307:-117.929,-11.1381,0	1/1:65:0,65:0:0:65:2289:-206.268,-19.567,0	0/1:136:70,66:70:2463:66:2359:-171.628,0,-180.967	1/1:101:1,100:1:36:100:3547:-315.84,-26.8058,0	1/1:131:0,131:0:0:131:4687:-421.99,-39.4349,0	0/1:96:52,44:52:1823:44:1563:-112.062,0,-135.446	1/1:53:1,52:1:36:52:1849:-163.09,-12.3563,0	1/1:84:0,84:0:0:84:3004:-270.592,-25.2865,0	1/1:183:0,183:0:0:183:6499:-584.995,-55.0885,0	1/1:203:1,202:1:36:202:7199:-644.369,-57.5108,0	1/1:49:1,48:1:36:48:1690:-148.787,-11.1522,0	0/1:265:144,121:144:5149:121:4303:-307.674,0,-383.777	0/1:125:59,66:59:2108:66:2360:-175.03,0,-152.361	0/1:73:29,44:29:1040:44:1576:-120.156,0,-71.9392	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	1/1:10:0,10:0:0:10:356:-32.336,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:14:9,5:9:316:5:176:-11.9706,0,-24.5644	0/1:206:103,103:103:3704:103:3679:-269.301,0,-271.531	0/1:141:60,81:60:2156:81:2857:-214.919,0,-151.862	0/1:95:42,53:42:1512:53:1868:-139.799,0,-107.777	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:100:0,99:0:0:99:3501:-314.94,-29.802,0	1/1:59:0,59:0:0:59:2114:-190.529,-17.7608,0	0/1:174:107,67:107:3852:67:2373:-161.446,0,-294.494	0/1:48:22,26:22:792:26:936:-70.11,0,-57.1562	0/1:87:43,44:43:1544:44:1534:-112.158,0,-113.063	1/1:71:1,70:1:36:70:2495:-221.204,-17.7749,0	0/1:119:76,43:76:2698:43:1529:-102.079,0,-207.239	0/1:271:140,131:140:5017:131:4645:-336.634,0,-370.092	0/1:190:83,107:83:2976:107:3791:-284.191,0,-210.877	1/1:137:0,135:0:0:135:4777:-429.707,-40.6391,0	0/1:160:54,106:54:1928:106:3780:-292.233,0,-125.562	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:180:2,178:2:72:178:6356:-565.293,-47.3487,0	1/1:85:0,85:0:0:85:3025:-272.481,-25.5876,0	0/1:11:4,7:4:144:7:240:-18.6228,0,-10.0023	0/1:198:104,94:104:3724:94:3316:-239.053,0,-275.131	1/1:25:1,24:1:36:24:845:-72.7688,-3.92748,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:121:56,63:56:2008:63:2264:-167.84,0,-144.811	1/1:142:1,141:1:36:141:4975:-444.301,-39.148,0	1/1:7:0,7:0:0:7:239:-21.8427,-2.10721,0	1/1:250:1,249:1:36:249:8880:-795.588,-71.6592,0	1/1:166:0,166:0:0:166:5903:-531.381,-49.971,0	0/1:54:20,34:20:720:34:1207:-92.6797,0,-48.8732	1/1:101:0,101:0:0:101:3609:-325.015,-30.404,0	0/1:104:58,46:58:2080:46:1655:-117.928,0,-155.936	0/1:212:143,69:143:5136:69:2432:-155.315,0,-398.561	0/1:53:24,29:24:860:29:1006:-74.892,0,-61.7672	0/1:62:30,32:30:1076:32:1140:-84.2453,0,-78.489	0/1:75:38,37:38:1368:37:1285:-93.3704,0,-100.844	1/1:18:0,18:0:0:18:631:-57.1157,-5.41854,0	1/1:166:0,166:0:0:166:5904:-531.443,-49.971,0	0/1:125:22,103:22:792:103:3673:-293.145,0,-33.9769	1/1:156:0,156:0:0:156:5539:-498.632,-46.9607,0	1/1:164:0,164:0:0:164:5846:-526.253,-49.3689,0	0/1:155:92,63:92:3300:63:2225:-153.853,0,-250.289	0/1:96:46,50:46:1633:50:1787:-132.213,0,-118.358	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	1/1:137:0,137:0:0:137:4863:-437.824,-41.2411,0	1/1:98:0,98:0:0:98:3475:-312.962,-29.5009,0	0/1:220:98,122:98:3497:122:4316:-322.39,0,-248.713	1/1:70:0,70:0:0:70:2505:-225.701,-21.0721,0	1/1:92:0,92:0:0:92:3222:-290.2,-27.6948,0	1/1:49:0,49:0:0:49:1734:-156.343,-14.7505,0	0/1:135:69,66:69:2480:66:2343:-170.489,0,-182.814	0/1:18:8,10:8:284:10:356:-26.9627,0,-20.4848	0/1:69:33,36:33:1188:36:1292:-95.8127,0,-86.4575	1/1:82:0,82:0:0:82:2919:-262.945,-24.6845,0	0/1:72:41,31:41:1476:31:1116:-79.0775,0,-111.462	0/1:230:123,107:123:4420:107:3813:-274.13,0,-328.733	0/1:65:36,29:36:1265:29:1044:-74.5175,0,-94.5836	1/1:116:0,116:0:0:116:4110:-370.084,-34.9195,0	1/1:134:0,134:0:0:134:4722:-425.141,-40.338,0
chr02	25144986	.	AGTT	AGTA,GGTA	364733	PASS	AB=0.577251,0.416359;ABP=368.03,430.917;AC=137,51;AF=0.728723,0.271277;AN=188;AO=10850,2943;CIGAR=3M1X,1X2M1X;DP=13858;DPB=13862.2;DPRA=0,0.931366;EPP=23563.5,6393.65;EPPR=13.8677;GTI=2;LEN=1,4;MEANALT=2.17021,2.73214;MQM=49.2103,52.8719;MQMR=55.6;NS=94;NUMALT=2;ODDS=3.49374;PAIRED=0,0;PAIREDR=0;PAO=7,7;PQA=239.5,239.5;PQR=0;PRO=3;QA=387680,100550;QR=162;RO=5;RPL=4619,1960;RPP=523.072,707.303;RPPR=3.44459;RPR=6231,983;RUN=1,1;SAF=4619,1960;SAP=523.072,707.303;SAR=6231,983;SRF=3;SRP=3.44459;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37,0:0:0:37,0:1324,0:-117.248,-11.1381,0,-117.248,-11.1381,-117.248	1/1:184:0,184,0:0:0:184,0:6533,0:-574.317,-55.3895,0,-574.317,-55.3895,-574.317	1/2:206:0,146,60:0:0:146,60:5221,2089:-582.153,-170.158,-126.208,-412.284,0,-394.222	1/1:435:0,433,0:0:0:433,0:15406,0:-1357.99,-130.346,0,-1357.99,-130.346,-1357.99	1/2:38:0,28,9:0:0:28,9:1004,318:-104.582,-25.8378,-17.4089,-78.6828,0,-75.9735	1/2:30:0,20,9:0:0:20,9:701,317:-82.2208,-25.864,-19.8434,-56.4101,0,-53.7008	1/2:217:0,116,98:0:0:116,98:4148,3336:-597.442,-265.019,-230.099,-332.433,0,-302.932	1/2:204:0,144,59:0:0:144,59:5153,2062:-575.923,-167.875,-124.527,-408.184,0,-390.424	1/2:130:0,69,61:0:0:69,61:2472,2093:-368.78,-170.209,-149.437,-198.852,0,-180.49	1/2:153:0,67,85:0:0:67,85:2368,2827:-414.001,-225.062,-204.893,-188.999,0,-163.412	1/1:98:0,98,0:0:0:98,0:3499,0:-310.348,-29.5009,0,-310.348,-29.5009,-310.348	1/2:149:0,98,51:0:0:98,51:3520,1767:-426.258,-143.958,-114.457,-282.649,0,-267.296	1/2:116:0,78,37:0:0:78,37:2778,1296:-329.463,-105.568,-82.088,-224.012,0,-212.874	1/2:128:0,72,54:0:0:72,54:2576,1886:-358.436,-152.574,-130.9,-205.881,0,-189.625	1/2:120:0,64,55:0:0:64,55:2300,1852:-333.804,-148.249,-128.983,-185.647,0,-169.09	1/2:76:0,45,31:0:0:45,31:1620,1102:-220.107,-90.1585,-76.6122,-130.303,0,-120.971	1/1:103:0,103,0:0:0:103,0:3663,0:-323.338,-31.0061,0,-323.338,-31.0061,-323.338	1/1:64:0,64,0:0:0:64,0:2277,0:-202.707,-19.2659,0,-202.707,-19.2659,-202.707	1/1:71:0,71,0:0:0:71,0:2524,0:-223.557,-21.3731,0,-223.557,-21.3731,-223.557	1/2:424:1,226,196:1:36:226,196:8090,6670:-1173.35,-526.848,-461.753,-643.983,0,-587.919	1/1:275:0,275,0:0:0:275,0:9832,0:-862.072,-82.7833,0,-862.072,-82.7833,-862.072	1/1:199:0,197,0:0:0:197,0:7055,0:-628.012,-59.3029,0,-628.012,-59.3029,-628.012	1/2:123:0,56,65:0:0:56,65:2007,2183:-334.937,-173.993,-157.135,-161.016,0,-141.449	1/1:64:0,64,0:0:0:64,0:2262,0:-199.161,-19.2659,0,-199.161,-19.2659,-199.161	1/1:120:1,116,0:1:24:116,0:4154,0:-363.919,-33.0872,0,-364.22,-34.9195,-366.069	1/1:419:0,416,2:0:0:416,2:14890,71:-1321.45,-125.228,0,-1315.95,-119.678,-1315.35	1/1:300:0,300,0:0:0:300,0:10734,0:-942.798,-90.309,0,-942.798,-90.309,-942.798	1/1:42:0,42,0:0:0:42,0:1508,0:-133.646,-12.6433,0,-133.646,-12.6433,-133.646	1/2:446:0,243,199:0:0:243,199:8731,6704:-1232.57,-529.515,-456.364,-703.107,0,-643.202	1/2:178:0,140,36:0:0:140,36:4989,1251:-492.853,-101.797,-59.6528,-391.148,0,-380.31	1/2:115:0,57,58:0:0:57,58:2036,1980:-321.136,-158.062,-140.903,-163.418,0,-145.958	1/2:21:0,16,5:0:0:16,5:572,180:-59.3539,-15.0469,-10.2304,-44.6624,0,-43.1572	1/1:20:0,20,0:0:0:20,0:702,0:-61.7768,-6.0206,0,-61.7768,-6.0206,-61.7768	1/1:12:0,12,0:0:0:12,0:419,0:-37.1731,-3.61236,0,-37.1731,-3.61236,-37.1731	1/1:22:0,22,0:0:0:22,0:792,0:-69.1242,-6.62266,0,-69.1242,-6.62266,-69.1242	1/2:15:0,13,2:0:0:13,2:468,72:-41.5243,-6.23466,-2.32127,-35.6462,0,-35.0441	1/2:224:0,108,115:0:0:108,115:3868,3910:-624.918,-313.195,-280.684,-311.708,0,-277.09	1/2:109:0,90,19:0:0:90,19:3215,651:-307.695,-52.571,-25.4783,-255.408,0,-249.689	1/2:69:0,40,28:0:0:40,28:1440,997:-195.563,-81.2567,-69.2155,-114.3,0,-105.871	1/1:1:0,1,0:0:0:1,0:36,0:-3.45449,-0.30103,0,-3.45449,-0.30103,-3.45449	1/1:335:0,334,0:0:0:334,0:11912,0:-1046.26,-100.544,0,-1046.26,-100.544,-1046.26	1/1:46:0,46,0:0:0:46,0:1652,0:-145.741,-13.8474,0,-145.741,-13.8474,-145.741	1/2:204:0,157,47:0:0:157,47:5592,1620:-569.632,-131.935,-84.6732,-438.041,0,-423.893	1/2:86:0,51,35:0:0:51,35:1832,1213:-244.503,-97.5645,-82.2119,-147.227,0,-136.691	1/2:82:0,42,40:0:0:42,40:1508,1371:-231.112,-110.2,-97.5563,-121.258,0,-109.217	1/1:146:0,146,0:0:0:146,0:5203,0:-464.482,-43.9504,0,-464.482,-43.9504,-464.482	1/2:121:1,85,35:1:36:85,35:3044,1225:-337.255,-96.7188,-74.0689,-237.89,0,-230.291	1/2:253:0,121,130:0:0:121,130:4339,4365:-688.476,-343.755,-307.331,-344.73,0,-305.596	1/2:161:0,77,84:0:0:77,84:2747,2888:-451.467,-230.817,-207.638,-220.996,0,-195.709	1/1:256:0,255,0:0:0:255,0:9099,0:-799.841,-76.7627,0,-799.841,-76.7627,-799.841	1/2:205:0,104,101:0:0:104,101:3706,3422:-572.281,-272.811,-241.504,-299.813,0,-269.409	1/2:16:0,6,10:0:0:6,10:216,326:-42.6785,-25.4695,-23.6633,-17.5463,0,-14.536	1/1:222:0,221,0:0:0:221,0:7906,0:-692.732,-66.5276,0,-692.732,-66.5276,-692.732	1/1:126:0,125,0:0:0:125,0:4474,0:-396.918,-37.6288,0,-396.918,-37.6288,-396.918	1/1:23:0,22,1:0:0:22,1:776,27:-68.9461,-6.62266,0,-66.8207,-4.22391,-66.5197	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chr02	25251928	.	G	A	18492.4	PASS	AB=0.518345;ABP=10.4994;AC=50;AF=0.271739;AN=184;AO=1335;CIGAR=1X;DP=7456;DPB=7456;DPRA=0.885759;EPP=2483.9;EPPR=10516.6;GTI=4;LEN=1;MEANALT=1.01852;MQM=34.1004;MQMR=45.4293;NS=92;NUMALT=1;ODDS=0.616151;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47944;QR=218637;RO=6119;RPL=50;RPP=2483.9;RPPR=10516.6;RPR=1285;RUN=1;SAF=1335;SAP=2901.93;SAR=0;SRF=6119;SRP=13290.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:37,0:37:1332:0:0:0,-11.1381,-118.907	0/0:62:62,0:62:2220:0:0:0,-18.6639,-197.801	0/1:82:45,37:45:1593:37:1320:-81.6114,0,-117.062	0/0:128:127,1:127:4552:1:36:0,-35.4082,-398.094	0/1:17:10,7:10:360:7:252:-14.9323,0,-27.2146	0/1:31:17,14:17:604:14:504:-31.8959,0,-44.7682	0/1:38:20,18:20:716:18:644:-39.3155,0,-51.74	0/1:81:42,39:42:1508:39:1392:-86.9061,0,-110.257	0/1:53:30,23:30:1072:23:828:-51.4621,0,-79.4047	0/1:65:23,42:23:824:42:1512:-100.104,0,-53.107	0/0:49:49,0:49:1752:0:0:0,-14.7505,-153.483	0/1:58:30,28:30:1067:28:1008:-63.5582,0,-77.8858	0/1:29:10,19:10:356:19:684:-46.469,0,-23.0612	0/1:46:26,20:26:924:20:720:-43.3516,0,-67.7229	0/1:35:17,18:17:608:18:648:-40.1792,0,-43.0275	0/1:44:22,22:22:788:22:792:-48.7732,0,-57.0631	0/0:21:21,0:21:756:0:0:0,-6.32163,-67.3498	0/0:17:17,0:17:593:0:0:0,-5.11751,-52.7389	0/0:97:97,0:97:3476:0:0:0,-29.1999,-308.816	0/1:41:18,23:18:644:23:824:-52.7549,0,-44.4237	0/0:189:189,0:189:6747:0:0:0,-56.8947,-597.047	0/0:54:54,0:54:1940:0:0:0,-16.2556,-171.758	0/1:56:26,30:26:932:30:1080:-67.7929,0,-65.9246	0/0:41:41,0:41:1468:0:0:0,-12.3422,-130.32	0/0:57:57,0:57:2035:0:0:0,-17.1587,-180.622	0/0:165:164,1:164:5853:1:36:0,-46.6154,-514.488	0/0:129:129,0:129:4632:0:0:0,-38.8329,-407.548	0/0:20:20,0:20:720:0:0:0,-6.0206,-63.2096	0/1:104:45,59:45:1616:59:2120:-133.476,0,-111.045	0/1:103:62,41:62:2220:41:1472:-84.5239,0,-165.756	0/1:43:20,23:20:697:23:828:-51.9065,0,-49.4298	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.54852	0/0:482:482,0:482:17219:0:0:0,-145.096,-1523.3	0/0:165:165,0:165:5902:0:0:0,-49.6699,-522.788	0/0:1229:1224,4:1224:43728:4:144:0,-358.189,-3870.9	0/1:4:2,2:2:72:2:72:-4.85237,0,-5.55725	0/1:114:55,59:55:1957:59:2120:-129.49,0,-138.735	0/1:45:14,31:14:504:31:1112:-74.1375,0,-31.5198	0/1:33:15,18:15:527:18:648:-43.5118,0,-36.7807	.:.:.:.:.:.:.:.	0/0:61:61,0:61:2179:0:0:0,-18.3628,-191.757	0/0:93:93,0:93:3336:0:0:0,-27.9958,-294.025	0/1:64:30,34:30:1063:34:1216:-78.8382,0,-75.6899	0/1:36:17,19:17:612:19:680:-43.1586,0,-42.8329	0/1:19:8,11:8:288:11:396:-25.5168,0,-19.6432	0/0:67:67,0:67:2408:0:0:0,-20.169,-212.837	0/1:41:22,19:22:792:19:684:-42.2976,0,-58.5819	0/1:70:39,31:39:1379:31:1116:-66.3898,0,-100.744	0/1:51:29,22:29:1044:22:792:-47.0374,0,-77.4174	0/0:53:53,0:53:1881:0:0:0,-15.9546,-166.884	0/1:34:17,17:17:599:17:608:-36.3644,0,-43.1435	.:.:.:.:.:.:.:.	0/0:77:77,0:77:2772:0:0:0,-23.1793,-246.242	0/0:30:30,0:30:1059:0:0:0,-9.0309,-94.1467	0/1:7:4,3:4:144:3:108:-7.20141,0,-11.0964	0/1:94:38,56:38:1356:56:2012:-129.506,0,-91.6126	0/0:24:24,0:24:856:0:0:0,-7.22472,-75.2825	0/1:4:3,1:3:108:1:36:-1.85042,0,-8.69702	0/1:6:2,4:2:72:4:144:-9.55953,0,-4.92423	0/1:70:37,33:37:1320:33:1188:-72.5565,0,-95.9985	0/0:71:70,1:70:2507:1:36:0,-18.2495,-216.874	0/0:160:160,0:160:5721:0:0:0,-48.1648,-503.404	0/0:101:101,0:101:3605:0:0:0,-30.404,-317.609	0/0:87:87,0:87:3112:0:0:0,-26.1896,-275.805	0/1:36:17,19:17:608:19:684:-42.9474,0,-43.0994	0/0:51:51,0:51:1832:0:0:0,-15.3525,-161.875	0/1:107:53,54:53:1883:54:1940:-120.127,0,-135.03	0/1:114:35,79:35:1252:79:2840:-188.497,0,-76.8027	0/1:33:13,20:13:468:20:720:-46.5904,0,-31.9477	0/1:36:14,22:14:500:22:788:-52.6668,0,-32.298	0/1:30:19,11:19:684:11:396:-21.7029,0,-51.7904	0/0:357:357,0:357:12718:0:0:0,-107.468,-1120.97	0/0:130:130,0:130:4660:0:0:0,-39.1339,-413.912	0/1:62:32,30:32:1136:30:1076:-67.7951,0,-82.4362	0/0:125:125,0:125:4452:0:0:0,-37.6287,-393.538	0/0:72:72,0:72:2584:0:0:0,-21.6742,-228.964	0/1:23:14,9:14:500:9:324:-19.2148,0,-37.966	0/1:82:35,47:35:1252:47:1680:-110.671,0,-87.2329	0/1:9:4,5:4:125:5:180:-11.9538,0,-8.76094	0/0:38:38,0:38:1356:0:0:0,-11.4391,-119.559	0/0:27:27,0:27:959:0:0:0,-8.12781,-85.7155	0/1:96:47,49:47:1672:49:1760:-109.036,0,-119.474	0/0:61:61,0:61:2196:0:0:0,-18.3628,-193.019	0/0:39:39,0:39:1396:0:0:0,-11.7402,-123.964	0/0:35:35,0:35:1237:0:0:0,-10.536,-109.715	0/1:79:35,44:35:1252:44:1576:-100.393,0,-87.34	0/1:14:4,10:4:144:10:360:-25.0597,0,-8.95246	0/1:40:25,15:25:879:15:540:-31.1898,0,-66.278	0/0:41:41,0:41:1464:0:0:0,-12.3422,-130.724	0/1:33:21,12:21:743:12:432:-24.2299,0,-56.4388	0/1:106:56,50:56:2003:50:1792:-109.592,0,-145.837	0/1:44:15,29:15:540:29:1044:-68.3944,0,-34.846	0/0:96:96,0:96:3452:0:0:0,-28.8989,-304.631	0/0:55:54,0:54:1927:0:0:0,-16.2556,-169.799
chr02	25252019	.	T	G	118877	PASS	AB=0.498479;ABP=3.08294;AC=134;AF=0.72043;AN=186;AO=5517;CIGAR=1X;DP=7337;DPB=7337;DPRA=0;EPP=11247.7;EPPR=3728.14;GTI=1;LEN=1;MEANALT=1.02151;MQM=58.5358;MQMR=59.8119;NS=93;NUMALT=1;ODDS=0.887482;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196338;QR=65056;RO=1818;RPL=5431;RPP=11247.7;RPPR=3728.14;RPR=86;RUN=1;SAF=0;SAP=11983;SAR=5517;SRF=0;SRP=3950.75;SRR=1818;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1474:-132.578,-12.6433,0	1/1:111:0,111:0:0:111:3951:-355.371,-33.4143,0	0/1:36:16,20:16:576:20:716:-53.1464,0,-41.3379	1/1:249:0,249:0:0:249:8819:-793.221,-74.9565,0	0/1:12:5,7:5:180:7:252:-19.4132,0,-12.9397	0/1:31:19,12:19:680:12:432:-29.8783,0,-52.1972	0/1:134:72,62:72:2549:62:2211:-158.783,0,-188.517	0/1:108:51,57:51:1828:57:2035:-150.677,0,-132.289	0/1:98:51,47:51:1832:47:1671:-121.103,0,-135.646	0/1:159:75,84:75:2666:84:3004:-222.203,0,-192.319	1/1:31:0,31:0:0:31:1112:-99.9002,-9.33193,0	0/1:54:28,25:28:1008:25:892:-64.2447,0,-74.7211	0/1:57:23,34:23:828:34:1198:-90.8624,0,-57.6155	0/1:66:33,33:33:1184:33:1175:-86.1174,0,-86.9994	0/1:64:35,29:35:1248:29:1028:-73.4653,0,-93.3547	0/1:25:13,12:13:468:12:428:-31.2879,0,-34.9339	1/1:55:0,55:0:0:55:1980:-178.079,-16.5567,0	1/1:50:0,50:0:0:50:1772:-159.698,-15.0515,0	1/1:19:0,19:0:0:19:684:-61.804,-5.71957,0	0/1:102:46,56:46:1640:56:2008:-149.577,0,-117.184	1/1:205:0,204:0:0:204:7274:-652.538,-61.4101,0	1/1:103:0,103:0:0:103:3667:-330.053,-31.0061,0	0/1:56:31,25:31:1116:25:875:-62.1635,0,-83.894	1/1:142:0,142:0:0:142:5058:-454.998,-42.7463,0	1/1:25:0,25:0:0:25:870:-78.5541,-7.52575,0	1/1:380:0,380:0:0:380:13472:-1209.26,-114.391,0	1/1:115:0,115:0:0:115:4115:-369.886,-34.6185,0	1/1:30:0,30:0:0:30:1064:-96.0146,-9.0309,0	0/1:178:86,92:86:3088:92:3271:-240.63,0,-224.564	0/1:105:46,59:46:1652:59:2108:-158.333,0,-117.315	0/1:246:122,124:122:4376:124:4423:-323.916,0,-319.959	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:7:0,7:0:0:7:252:-23.028,-2.10721,0	1/1:5:0,5:0:0:5:180:-16.4719,-1.50515,0	1/1:5:0,5:0:0:5:176:-16.1058,-1.50515,0	0/1:9:8,1:8:280:1:32:-0.489641,0,-22.8291	0/1:177:87,90:87:3105:90:3206:-235.32,0,-226.383	0/1:106:45,61:45:1616:61:2180:-163.866,0,-113.816	0/1:39:19,20:19:684:20:694:-50.9178,0,-50.1483	.:.:.:.:.:.:.:.	1/1:152:0,152:0:0:152:5431:-487.609,-45.7566,0	1/1:14:0,14:0:0:14:504:-45.653,-4.21442,0	0/1:63:32,31:32:1140:31:1099:-80.077,0,-83.9443	0/1:72:29,43:29:1040:43:1522:-115.492,0,-72.2402	0/1:45:28,17:28:1004:17:594:-40.2398,0,-77.1171	1/1:155:0,155:0:0:155:5555:-499.713,-46.6597,0	0/1:57:33,24:33:1164:24:843:-58.8923,0,-87.1255	0/1:124:61,63:61:2180:63:2251:-165.343,0,-159.139	0/1:85:46,39:46:1656:39:1387:-99.5231,0,-123.741	1/1:148:0,148:0:0:148:5303:-476.956,-44.5524,0	0/1:124:55,69:55:1980:69:2459:-184.087,0,-141.139	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	1/1:48:0,48:0:0:48:1711:-154.203,-14.4494,0	1/1:71:1,70:1:36:70:2486:-220.276,-17.7749,0	0/1:9:6,3:6:216:3:108:-7.25428,0,-17.0812	0/1:62:33,29:33:1180:29:1010:-72.0165,0,-87.8396	1/1:62:0,62:0:0:62:2196:-197.588,-18.6639,0	0/1:8:5,3:5:180:3:108:-7.63715,0,-14.1438	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2688	0/1:56:33,23:33:1188:23:811:-56.4259,0,-90.3709	1/1:81:0,81:0:0:81:2898:-260.567,-24.3834,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:226:2,224:2:72:224:7973:-710.232,-61.1961,0	1/1:104:0,104:0:0:104:3693:-332.193,-31.3071,0	0/1:100:60,40:60:2144:40:1428:-98.6696,0,-162.594	1/1:46:0,46:0:0:46:1652:-148.676,-13.8474,0	0/1:98:53,45:53:1889:45:1589:-113.626,0,-140.749	0/1:42:32,10:32:1140:10:343:-18.5507,0,-90.2659	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:42:18,24:18:648:24:836:-62.8631,0,-46.0086	0/1:72:34,38:34:1220:38:1352:-100.273,0,-88.4326	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:82:0,82:0:0:82:2916:-262.374,-24.6845,0	0/1:53:26,27:26:924:27:968:-71.3802,0,-67.5218	1/1:159:0,159:0:0:159:5608:-503.103,-47.8638,0	1/1:126:0,126:0:0:126:4499:-404.878,-37.9298,0	0/1:38:23,15:23:813:15:528:-36.3977,0,-62.0481	0/1:125:58,67:58:2069:67:2395:-178.018,0,-148.85	0/1:8:4,4:4:144:4:144:-10.9017,0,-10.9044	1/1:91:0,91:0:0:91:3230:-290.527,-27.3937,0	1/1:77:2,75:2:57:75:2678:-235.402,-17.766,0	0/1:127:65,62:65:2320:62:2228:-162.234,0,-170.827	1/1:111:0,111:0:0:111:3946:-355.167,-33.4143,0	1/1:39:0,39:0:0:39:1383:-124.694,-11.7402,0	1/1:104:0,104:0:0:104:3688:-332.06,-31.3071,0	0/1:113:48,65:48:1728:65:2313:-174.372,0,-121.761	0/1:34:15,19:15:540:19:662:-49.3777,0,-38.7015	0/1:64:30,34:30:1080:34:1207:-89.6331,0,-78.2455	1/1:57:0,57:0:0:57:2040:-183.744,-17.1587,0	0/1:14:2,12:2:72:12:432:-34.9598,0,-2.6223	0/1:35:13,22:13:468:22:771:-59.0652,0,-31.9236	0/1:54:41,13:41:1476:13:462:-25.5961,0,-116.723	1/1:110:0,110:0:0:110:3932:-353.782,-33.1133,0	1/1:72:0,72:0:0:72:2583:-231.315,-21.6742,0
chr02	25259462	.	A	G	93886.4	PASS	AB=0.523263;ABP=18.9728;AC=135;AF=0.718085;AN=188;AO=4551;CIGAR=1X;DP=6177;DPB=6177;DPRA=0;EPP=9850.67;EPPR=3525.14;GTI=0;LEN=1;MEANALT=1;MQM=59.488;MQMR=59.8635;NS=94;NUMALT=1;ODDS=0.787691;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161815;QR=57661;RO=1626;RPL=4550;RPP=9876.7;RPPR=3533.82;RPR=1;RUN=1;SAF=4546;SAP=9842;SAR=5;SRF=1625;SRP=3525.14;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:744:-67.281,-6.32163,0	1/1:88:0,88:0:0:88:3132:-282.077,-26.4906,0	0/1:24:11,13:11:392:13:451:-33.6951,0,-28.3953	1/1:89:0,89:0:0:89:3184:-286.55,-26.7917,0	0/1:40:20,20:20:712:20:720:-53.0876,0,-52.3655	0/1:45:23,22:23:820:22:779:-56.8857,0,-60.5762	0/1:108:52,56:52:1849:56:1976:-145.577,0,-134.177	0/1:117:49,68:49:1748:68:2409:-181.638,0,-122.384	0/1:53:19,34:19:671:34:1208:-93.0633,0,-44.7612	0/1:110:49,61:49:1730:61:2176:-162.942,0,-122.87	1/1:61:0,61:0:0:61:2180:-196.452,-18.3628,0	0/1:49:22,27:22:776:27:964:-72.3264,0,-55.4117	0/1:41:16,25:16:568:25:900:-68.9788,0,-39.1096	0/1:70:37,33:37:1320:33:1173:-84.7997,0,-98.0283	0/1:45:22,23:22:784:23:807:-59.3865,0,-57.3376	0/1:43:20,23:20:720:23:804:-59.4984,0,-52.1845	1/1:54:0,54:0:0:54:1919:-172.959,-16.2556,0	1/1:59:0,59:0:0:59:2111:-190.232,-17.7608,0	1/1:35:0,35:0:0:35:1247:-112.525,-10.5361,0	0/1:104:60,44:60:2148:44:1567:-109.997,0,-162.168	1/1:94:0,94:0:0:94:3351:-301.723,-28.2968,0	1/1:71:0,71:0:0:71:2524:-227.388,-21.3731,0	0/1:32:9,23:9:320:23:828:-65.203,0,-19.4955	1/1:96:0,96:0:0:96:3381:-304.409,-28.8989,0	1/1:52:0,52:0:0:52:1850:-166.767,-15.6536,0	1/1:272:2,270:2:68:270:9622:-859.333,-75.4225,0	1/1:113:0,113:0:0:113:3987:-358.846,-34.0164,0	1/1:25:0,25:0:0:25:892:-80.538,-7.52575,0	0/1:141:87,54:87:3104:54:1928:-131.335,0,-237.137	0/1:89:39,50:39:1372:50:1771:-132.084,0,-96.8571	0/1:79:35,44:35:1235:44:1580:-118.688,0,-87.6721	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	1/1:24:0,24:0:0:24:864:-78.078,-7.22472,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:20:0,20:0:0:20:716:-64.7595,-6.0206,0	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:158:81,77:81:2862:77:2750:-200.162,0,-210.256	0/1:128:55,73:55:1964:73:2598:-195.391,0,-138.503	0/1:64:31,33:31:1104:33:1171:-86.4226,0,-79.4658	0/1:12:9,3:9:309:3:108:-6.46281,0,-24.5284	1/1:90:0,90:0:0:90:3200:-288.207,-27.0927,0	1/1:46:0,46:0:0:46:1652:-148.95,-13.8474,0	0/1:99:47,52:47:1663:52:1845:-136.526,0,-120.155	0/1:54:30,24:30:1072:24:860:-61.4649,0,-80.5368	0/1:31:17,14:17:596:14:491:-35.181,0,-44.6359	1/1:73:0,73:0:0:73:2604:-234.6,-21.9752,0	0/1:62:28,34:28:999:34:1189:-88.4504,0,-71.5606	0/1:100:45,55:45:1585:55:1941:-144.861,0,-112.835	0/1:49:20,29:20:708:29:1040:-79.1639,0,-49.2765	1/1:48:0,48:0:0:48:1701:-153.346,-14.4494,0	0/1:121:54,67:54:1928:67:2377:-177.749,0,-137.372	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:74:0,74:0:0:74:2621:-236.118,-22.2762,0	1/1:45:0,45:0:0:45:1599:-144.199,-13.5464,0	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/1:67:22,45:22:788:45:1612:-125.192,0,-51.0758	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:16:11,5:11:392:5:176:-11.3685,0,-30.8036	0/1:79:30,49:30:1068:49:1735:-132.582,0,-72.6507	1/1:111:0,111:0:0:111:3957:-356.083,-33.4143,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:125:0,125:0:0:125:4439:-399.423,-37.6288,0	1/1:136:1,135:1:36:135:4844:-432.438,-37.3418,0	0/1:60:32,28:32:1121:28:995:-71.8022,0,-83.1046	1/1:31:0,31:0:0:31:1100:-99.2845,-9.33193,0	0/1:76:33,43:33:1163:43:1521:-114.08,0,-82.0978	0/1:89:50,39:50:1776:39:1388:-98.2358,0,-133.331	0/1:38:16,22:16:553:22:780:-58.9873,0,-38.6549	0/1:52:14,38:14:495:38:1356:-106.485,0,-29.2295	0/1:71:29,42:29:1023:42:1503:-114.167,0,-71.0086	1/1:21:0,21:0:0:21:752:-67.9899,-6.32163,0	1/1:132:0,132:0:0:132:4690:-422.204,-39.736,0	0/1:25:9,16:9:316:16:564:-43.5646,0,-21.2531	1/1:148:0,148:0:0:148:5242:-471.895,-44.5524,0	1/1:78:0,78:0:0:78:2795:-251.781,-23.4803,0	0/1:92:58,34:58:2034:34:1207:-81.2127,0,-155.551	0/1:103:57,46:57:2014:46:1615:-114.43,0,-150.515	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:74:3,71:3:108:71:2513:-216.284,-12.2011,0	1/1:50:0,50:0:0:50:1771:-159.652,-15.0515,0	0/1:106:62,44:62:2200:44:1550:-107.851,0,-166.135	1/1:61:0,61:0:0:61:2163:-194.912,-18.3628,0	1/1:41:0,41:0:0:41:1441:-129.959,-12.3422,0	1/1:53:0,53:0:0:53:1888:-170.179,-15.9546,0	0/1:116:62,54:62:2183:54:1917:-137.859,0,-161.817	0/1:24:7,17:7:252:17:603:-47.3748,0,-15.8042	0/1:58:24,34:24:840:34:1216:-92.2787,0,-58.4585	1/1:46:0,46:0:0:46:1633:-147.232,-13.8474,0	0/1:50:17,33:17:604:33:1159:-89.5341,0,-39.6391	0/1:113:45,68:45:1608:68:2412:-183.307,0,-110.994	0/1:40:30,10:30:1072:10:360:-20.6949,0,-84.7513	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:59:1,58:1:36:58:2058:-181.857,-14.1625,0
chr02	25259618	.	G	A	30789.8	PASS	AB=0.54614;ABP=66.7329;AC=55;AF=0.292553;AN=188;AO=1898;CIGAR=1X;DP=5655;DPB=5655;DPRA=1.46772;EPP=4115.78;EPPR=8154.72;GTI=2;LEN=1;MEANALT=1.04918;MQM=59.9921;MQMR=59.849;NS=94;NUMALT=1;ODDS=1.27308;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65834;QR=134131;RO=3754;RPL=1;RPP=4115.78;RPPR=8154.72;RPR=1897;RUN=1;SAF=1898;SAP=4124.46;SAR=0;SRF=3754;SRP=8154.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.323	0/1:64:26,38:26:924:38:1335:-101.183,0,-64.2105	0/0:59:59,0:59:2080:0:0:0,-17.7608,-187.468	0/1:29:12,17:12:432:17:608:-46.3222,0,-30.4913	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:43:20,23:20:720:23:797:-59.1016,0,-52.1845	0/1:86:26,60:26:915:60:2078:-161.4,0,-56.7753	0/1:28:14,14:14:504:14:450:-32.3794,0,-37.2683	0/1:56:19,37:19:684:37:1247:-95.6656,0,-45.015	0/0:75:75,0:75:2660:0:0:0,-22.5772,-239.645	0/1:54:34,20:34:1220:20:708:-47.79,0,-93.8269	0/1:78:36,42:36:1278:42:1459:-108.12,0,-91.8359	0/1:127:72,55:72:2558:55:1949:-137.453,0,-192.239	0/1:59:36,23:36:1280:23:801:-54.6459,0,-97.7425	0/1:60:32,28:32:1152:28:976:-70.0906,0,-85.9283	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.506	0/0:55:54,1:54:1940:1:36:0,-12.9584,-171.263	0/0:36:36,0:36:1275:0:0:0,-10.8371,-114.114	0/1:98:40,58:40:1436:58:2048:-155.091,0,-100.037	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:30:22,8:22:784:8:284:-16.8725,0,-61.853	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:30:30,0:30:1057:0:0:0,-9.0309,-95.0511	0/0:149:148,1:148:5300:1:36:0,-41.2552,-473.511	0/0:85:84,1:84:3008:1:25:0,-23.0877,-268.45	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:158:56,102:56:1976:102:3528:-270.17,0,-130.36	0/1:100:49,51:49:1748:51:1710:-124.07,0,-127.501	0/1:61:30,31:30:1072:31:1058:-77.1597,0,-78.4296	0/1:6:1,5:1:36:5:161:-13.0004,0,-1.79209	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	0/1:200:104,95:104:3740:95:3328:-239.477,0,-276.523	0/1:134:45,89:45:1597:89:3032:-232.773,0,-103.522	0/1:60:30,30:30:1080:30:1041:-75.9356,0,-79.4496	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:41:41,0:41:1464:0:0:0,-12.3422,-131.984	0/1:29:15,14:15:540:14:484:-35.157,0,-40.2067	0/1:64:39,25:39:1400:25:873:-59.6186,0,-107.016	0/1:68:34,34:34:1224:34:1184:-86.3946,0,-89.997	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:47:29,18:29:1036:18:640:-43.7809,0,-79.4042	0/1:116:31,85:31:1101:85:2883:-224.789,0,-64.4789	0/1:78:21,57:21:744:57:1960:-153.192,0,-43.804	0/0:77:77,0:77:2739:0:0:0,-23.1793,-246.753	0/1:65:16,49:16:568:49:1711:-134.708,0,-31.8849	0/1:8:3,5:3:108:5:165:-12.7654,0,-7.66693	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.125	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:47:20,27:20:720:27:944:-71.1257,0,-50.9804	0/0:15:14,1:14:489:1:36:0,-0.917175,-40.7406	0/1:10:3,7:3:108:7:236:-18.5596,0,-7.06487	0/1:8:3,5:3:108:5:157:-12.0313,0,-7.66693	0/1:43:22,21:22:792:21:710:-51.2678,0,-58.6614	0/0:147:145,2:145:5188:2:72:0,-37.4147,-460.158	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.261	0/0:80:79,1:79:2809:1:32:0,-20.8831,-249.829	0/1:53:18,35:18:644:35:1193:-91.7127,0,-42.3244	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:108:39,69:39:1391:69:2416:-185.188,0,-92.977	0/1:36:14,22:14:504:22:733:-55.4436,0,-34.8564	0/1:42:15,27:15:528:27:941:-72.3584,0,-35.2081	0/1:29:11,18:11:396:18:613:-46.7588,0,-27.252	0/1:110:64,46:64:2284:46:1629:-113.784,0,-172.709	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.009	0/1:45:17,28:17:604:28:992:-76.048,0,-41.1257	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.068	0/1:73:35,38:35:1256:38:1299:-95.2285,0,-91.3692	0/1:122:40,82:40:1416:82:2779:-213.623,0,-91.0101	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:50:49,1:49:1760:1:32:0,-11.8522,-155.485	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.168	0/1:98:32,66:32:1136:66:2324:-179.916,0,-73.048	0/0:111:111,0:111:3992:0:0:0,-33.4143,-359.468	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/1:172:107,65:107:3836:65:2293:-154.854,0,-293.654	0/1:42:24,17:24:864:17:588:-40.5997,0,-65.4371	0/1:95:51,44:51:1836:44:1548:-111.014,0,-136.912	0/0:87:87,0:87:3096:0:0:0,-26.1896,-278.864	0/1:81:41,40:41:1455:40:1424:-104.074,0,-106.833	0/1:149:85,64:85:3031:64:2264:-159.17,0,-228.167	0/1:59:17,42:17:608:42:1488:-116.454,0,-37.2913	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:98:96,1:96:3440:1:36:0,-25.9315,-306.113
chr02	25259700	.	T	C	69258.1	PASS	AB=0.411599;ABP=219.542;AC=133;AF=0.707447;AN=188;AO=3525;CIGAR=1X;DP=5420;DPB=5420;DPRA=9.7971;EPP=7657.45;EPPR=3688.62;GTI=2;LEN=1;MEANALT=1.03261;MQM=59.8948;MQMR=59.9873;NS=94;NUMALT=1;ODDS=0.0122765;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123974;QR=67428;RO=1892;RPL=0;RPP=7657.45;RPPR=3688.62;RPR=3525;RUN=1;SAF=0;SAP=7657.45;SAR=3525;SRF=0;SRP=4111.44;SRR=1892;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:63:0,63:0:0:63:2170:-195.561,-18.9649,0	1/1:34:0,34:0:0:34:1203:-108.575,-10.235,0	0/1:89:64,25:64:2279:25:875:-52.2745,0,-178.58	1/1:101:1,100:1:36:100:3527:-314.042,-26.8058,0	0/1:56:26,30:26:932:30:1063:-79.1208,0,-67.335	0/1:34:28,6:28:996:6:212:-9.18978,0,-79.65	0/1:76:51,25:51:1820:25:880:-56.6394,0,-141.203	0/1:84:53,31:53:1896:31:1085:-72.6687,0,-145.632	0/1:99:44,55:44:1580:55:1912:-142.551,0,-112.69	0/1:45:26,19:26:936:19:680:-47.9828,0,-71.0131	1/1:26:0,26:0:0:26:920:-83.1137,-7.82678,0	0/1:79:37,42:37:1315:42:1492:-110.792,0,-94.8697	0/1:57:22,35:22:788:35:1235:-94.2947,0,-54.0861	0/1:29:14,15:14:504:15:531:-39.392,0,-36.9682	0/1:63:28,35:28:1004:35:1244:-93.2942,0,-71.711	0/1:34:11,23:11:392:23:828:-64.6068,0,-25.385	1/1:18:0,18:0:0:18:636:-57.5665,-5.41854,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:13:0,13:0:0:13:460:-41.7338,-3.91339,0	0/1:86:55,31:55:1968:31:1108:-74.1424,0,-151.506	1/1:154:0,154:0:0:154:5408:-486.851,-46.3586,0	1/1:50:0,49:0:0:49:1719:-154.63,-14.7505,0	0/1:74:61,13:61:2171:13:464:-19.8199,0,-173.38	1/1:46:0,46:0:0:46:1586:-143.024,-13.8474,0	1/1:59:0,58:0:0:58:2063:-185.723,-17.4597,0	1/1:121:0,121:0:0:121:4230:-380.87,-36.4246,0	1/1:118:0,118:0:0:118:4104:-369.547,-35.5215,0	1/1:25:1,24:1:36:24:852:-73.4021,-3.92748,0	0/1:135:74,61:74:2648:61:2163:-154.298,0,-197.927	0/1:72:40,32:40:1411:32:1117:-79.1612,0,-105.612	0/1:76:52,24:52:1868:24:856:-54.4828,0,-145.521	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:153:69,83:69:2443:83:2895:-214.66,0,-174.009	0/1:95:58,37:58:2062:37:1300:-88.6973,0,-157.252	0/1:28:18,10:18:640:10:348:-23.2263,0,-49.5005	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	1/1:91:0,91:0:0:91:3176:-286.06,-27.3937,0	1/1:27:1,26:1:36:26:899:-77.6198,-4.52954,0	0/1:126:77,49:77:2724:49:1752:-120.034,0,-207.473	0/1:32:19,13:19:676:13:468:-32.8267,0,-51.535	0/1:52:23,29:23:820:29:1011:-75.6469,0,-58.469	1/1:103:0,103:0:0:103:3630:-326.891,-31.0061,0	0/1:95:61,34:61:2142:34:1203:-79.9772,0,-164.447	0/1:99:70,29:70:2503:29:1019:-62.2193,0,-195.72	0/1:50:32,18:32:1144:18:629:-41.8818,0,-88.218	1/1:46:0,46:0:0:46:1612:-145.358,-13.8474,0	0/1:68:33,35:33:1184:35:1236:-91.0742,0,-86.3983	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:71:0,71:0:0:71:2513:-226.421,-21.3731,0	1/1:24:0,24:0:0:24:848:-76.635,-7.22472,0	0/1:19:13,6:13:468:6:208:-13.3395,0,-36.7401	0/1:92:54,38:54:1906:38:1337:-92.9332,0,-144.122	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:7:4,3:4:136:3:99:-7.12937,0,-10.4683	0/1:10:3,7:3:108:7:244:-19.2891,0,-7.06487	0/1:66:45,21:45:1607:21:748:-47.7773,0,-125.051	1/1:97:0,97:0:0:97:3405:-306.668,-29.1999,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:46:0,46:0:0:46:1639:-147.784,-13.8474,0	1/1:93:0,93:0:0:93:3258:-293.428,-27.9958,0	0/1:35:25,10:25:884:10:356:-21.8452,0,-69.3423	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:80:55,25:55:1968:25:884:-55.796,0,-153.313	0/1:95:82,13:82:2924:13:445:-11.7741,0,-234.798	0/1:26:15,11:15:532:11:392:-27.7909,0,-40.3863	0/1:36:15,21:15:528:21:739:-55.9937,0,-37.0143	0/1:41:15,26:15:540:26:916:-70.4142,0,-36.5943	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:114:1,113:1:36:113:3963:-353.262,-30.7191,0	0/1:47:27,20:27:972:20:699:-49.0823,0,-73.6495	1/1:42:0,42:0:0:42:1491:-134.484,-12.6433,0	1/1:72:0,72:0:0:72:2527:-227.68,-21.6742,0	0/1:77:46,31:46:1648:31:1090:-75.2286,0,-125.429	0/1:55:28,27:28:1008:27:960:-70.1596,0,-74.4797	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:42:0,42:0:0:42:1471:-132.674,-12.6433,0	1/1:63:0,63:0:0:63:2223:-200.335,-18.9649,0	0/1:127:69,58:69:2468:58:2051:-146.628,0,-184.143	1/1:51:0,51:0:0:51:1773:-159.839,-15.3525,0	1/1:56:0,56:0:0:56:1956:-176.313,-16.8577,0	1/1:47:0,47:0:0:47:1630:-146.979,-14.1484,0	0/1:115:69,46:69:2451:46:1600:-109.664,0,-186.226	0/1:27:12,15:12:432:15:532:-40.0853,0,-31.0934	0/1:68:37,31:37:1316:31:1068:-75.9547,0,-98.2718	1/1:55:0,55:0:0:55:1955:-176.117,-16.5567,0	0/1:30:13,17:13:460:17:584:-43.8486,0,-32.7045	0/1:66:42,24:42:1479:24:851:-57.0388,0,-113.536	0/1:54:39,15:39:1383:15:532:-31.9575,0,-108.512	1/1:37:0,37:0:0:37:1300:-117.301,-11.1381,0	1/1:97:0,97:0:0:97:3427:-308.638,-29.1999,0
chr02	25274753	.	A	G	112947	PASS	AB=0.483269;ABP=14.3456;AC=134;AF=0.712766;AN=188;AO=5573;CIGAR=1X;DP=7999;DPB=7999;DPRA=21.4919;EPP=12104.6;EPPR=5253.63;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9245;MQMR=59.9843;NS=94;NUMALT=1;ODDS=0.372503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197964;QR=86453;RO=2422;RPL=5573;RPP=12104.6;RPPR=5262.32;RPR=0;RUN=1;SAF=0;SAP=12104.6;SAR=5573;SRF=1;SRP=5253.63;SRR=2421;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:1,18:1:36:18:648:-55.0482,-2.1213,0	1/1:95:0,95:0:0:95:3400:-306.209,-28.5979,0	0/1:68:26,42:26:932:42:1500:-114.824,0,-63.7242	1/1:73:1,72:1:36:72:2567:-227.681,-18.3769,0	0/1:24:16,8:16:576:8:288:-19.0427,0,-44.9503	0/1:45:29,16:29:1040:16:572:-38.2665,0,-80.368	0/1:120:63,56:63:2255:56:1995:-143.638,0,-167.03	0/1:159:83,76:83:2980:76:2719:-197.083,0,-220.564	0/1:90:34,56:34:1211:56:1975:-150.927,0,-82.2024	0/1:83:34,49:34:1211:49:1747:-132.528,0,-84.31	1/1:123:0,123:0:0:123:4361:-392.662,-37.0267,0	0/1:87:44,43:44:1563:43:1527:-111.532,0,-114.771	0/1:101:49,52:49:1722:52:1825:-134.121,0,-124.857	0/1:127:67,60:67:2400:60:2135:-154.187,0,-178.026	0/1:71:39,32:39:1396:32:1078:-75.9442,0,-104.566	0/1:80:38,42:38:1359:42:1472:-108.689,0,-98.5274	1/1:121:0,121:0:0:121:4293:-386.538,-36.4246,0	1/1:73:0,73:0:0:73:2570:-231.529,-21.9752,0	1/1:50:0,50:0:0:50:1777:-160.21,-15.0515,0	0/1:85:40,45:40:1423:45:1604:-119.058,0,-102.778	1/1:110:0,110:0:0:110:3885:-349.848,-33.1133,0	1/1:54:0,54:0:0:54:1897:-170.998,-16.2556,0	0/1:97:43,54:43:1536:54:1932:-144.957,0,-109.333	1/1:109:0,109:0:0:109:3881:-349.484,-32.8123,0	1/1:57:0,57:0:0:57:2013:-181.441,-17.1587,0	1/1:210:3,205:3:108:205:7292:-646.239,-52.8989,0	1/1:173:0,173:0:0:173:6116:-550.54,-52.0782,0	1/1:48:0,48:0:0:48:1712:-154.365,-14.4494,0	0/1:165:91,74:91:3245:74:2643:-188.446,0,-242.6	0/1:167:84,83:84:2995:83:2971:-217.35,0,-219.51	0/1:83:38,44:38:1368:44:1580:-117.447,0,-98.3765	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:241:134,107:134:4790:107:3810:-270.512,0,-358.707	0/1:177:82,95:82:2895:95:3367:-249.961,0,-207.503	0/1:108:65,43:65:2305:43:1540:-106.377,0,-175.198	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:76:0,76:0:0:76:2706:-243.783,-22.8783,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:114:57,57:57:2035:57:2044:-149.914,0,-149.104	0/1:125:63,62:63:2251:62:2213:-161.799,0,-165.224	0/1:70:34,36:34:1207:36:1269:-93.4387,0,-87.8632	1/1:86:2,84:2:72:84:2998:-263.161,-19.0519,0	0/1:79:45,34:45:1593:34:1224:-86.6841,0,-119.872	0/1:156:90,66:90:3215:66:2352:-164.974,0,-242.612	0/1:115:49,66:49:1760:66:2326:-174.977,0,-124.063	1/1:123:0,123:0:0:123:4363:-392.848,-37.0267,0	0/1:68:32,36:32:1148:36:1283:-95.298,0,-83.1598	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	1/1:76:0,76:0:0:76:2720:-245.042,-22.8783,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:11:6,5:6:208:5:180:-13.2407,0,-15.7478	0/1:96:54,42:54:1940:42:1503:-106.665,0,-145.977	1/1:58:2,56:2:72:56:2004:-173.797,-10.623,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:71:44,27:44:1584:27:968:-66.0642,0,-121.478	1/1:124:1,123:1:36:123:4353:-388.345,-33.7294,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:113:0,113:0:0:113:4044:-364.148,-34.0164,0	1/1:125:0,125:0:0:125:4467:-402.2,-37.6288,0	0/1:63:39,24:39:1400:24:864:-59.1177,0,-107.334	1/1:30:0,30:0:0:30:1048:-94.6301,-9.0309,0	0/1:106:45,61:45:1612:61:2150:-161.855,0,-113.46	0/1:80:51,29:51:1824:29:1044:-70.1924,0,-140.359	0/1:54:36,18:36:1288:18:644:-42.035,0,-99.9676	0/1:55:30,25:30:1067:25:849:-60.1608,0,-79.7846	0/1:104:49,55:49:1745:55:1959:-145.273,0,-126.025	1/1:29:0,29:0:0:29:1031:-93.1026,-8.72987,0	1/1:81:0,81:0:0:81:2883:-259.693,-24.3834,0	0/1:77:39,38:39:1404:38:1356:-99.1593,0,-103.48	1/1:146:0,146:0:0:146:5165:-464.99,-43.9504,0	1/1:90:0,90:0:0:90:3189:-287.234,-27.0927,0	0/1:112:46,66:46:1617:66:2347:-177.77,0,-112.102	0/1:68:36,32:36:1292:32:1152:-83.5189,0,-96.1137	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:57:0,57:0:0:57:2031:-183.06,-17.1587,0	0/1:98:53,45:53:1878:45:1591:-113.979,0,-139.796	1/1:127:0,127:0:0:127:4469:-402.364,-38.2308,0	1/1:85:0,85:0:0:85:3043:-274.099,-25.5876,0	1/1:131:0,131:0:0:131:4624:-416.324,-39.4349,0	0/1:173:91,82:91:3259:82:2906:-209.695,0,-241.452	0/1:49:23,26:23:828:26:914:-67.8234,0,-60.0936	0/1:96:51,45:51:1790:45:1599:-115.289,0,-132.478	1/1:91:0,91:0:0:91:3210:-289.115,-27.3937,0	0/1:89:52,37:52:1860:37:1317:-92.0336,0,-140.888	0/1:186:86,100:86:3075:100:3517:-260.745,0,-220.981	0/1:111:75,36:75:2683:36:1288:-82.8093,0,-208.3	1/1:83:0,83:0:0:83:2967:-267.247,-24.9855,0	1/1:113:1,112:1:36:112:3938:-351.007,-30.4181,0
chr02	25277965	.	G	A	42458.6	PASS	AB=0.48392;ABP=14.8823;AC=53;AF=0.281915;AN=188;AO=2571;CIGAR=1X;DP=9989;DPB=9989;DPRA=1.17227;EPP=5585.87;EPPR=16093.6;GTI=1;LEN=1;MEANALT=1.10345;MQM=59.9879;MQMR=59.995;NS=94;NUMALT=1;ODDS=0.302229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91734;QR=263410;RO=7410;RPL=0;RPP=5585.87;RPPR=16093.6;RPR=2571;RUN=1;SAF=0;SAP=5585.87;SAR=2571;SRF=0;SRP=16093.6;SRR=7410;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:148:148,0:148:5222:0:0:0,-44.5524,-470.118	0/1:139:77,62:77:2746:62:2208:-157.142,0,-205.538	0/0:264:264,0:264:9394:0:0:0,-79.4719,-845.427	0/1:123:74,49:74:2634:49:1760:-121.657,0,-200.28	0/1:85:49,36:49:1723:36:1280:-89.9157,0,-129.764	0/1:153:90,62:90:3199:62:2224:-154.308,0,-242.018	0/1:107:60,47:60:2135:47:1688:-119.997,0,-160.207	0/1:93:65,28:65:2295:28:984:-60.8763,0,-178.813	0/1:92:52,40:52:1868:40:1425:-100.852,0,-140.705	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6397	0/1:60:25,35:25:892:35:1260:-95.6437,0,-62.5379	0/1:46:24,22:24:847:22:788:-57.3974,0,-62.7013	0/1:49:25,24:25:887:24:864:-63.3321,0,-65.3976	0/1:40:20,20:20:712:20:703:-51.5523,0,-52.3655	0/1:28:17,11:17:608:11:392:-27.1912,0,-46.6232	0/0:31:31,0:31:1091:0:0:0,-9.33193,-98.4987	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:259:114,145:114:4047:145:5174:-387.833,0,-286.451	0/0:165:164,1:164:5871:1:36:0,-46.0717,-524.902	0/0:184:183,1:183:6517:1:36:0,-51.7912,-583.015	0/1:112:61,51:61:2172:51:1786:-127.303,0,-162.029	0/0:129:129,0:129:4594:0:0:0,-38.8329,-413.626	0/0:89:89,0:89:3169:0:0:0,-26.7917,-285.434	0/0:494:493,0:493:17552:0:0:0,-148.408,-1578.98	0/0:207:206,0:206:7320:0:0:0,-62.0122,-658.492	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/1:321:158,162:158:5621:162:5792:-424.635,0,-409.322	0/1:178:93,85:93:3308:85:3044:-220.606,0,-244.354	0/1:138:72,66:72:2588:66:2329:-168.327,0,-191.626	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:123:48,75:48:1716:75:2670:-203.518,0,-117.699	0/1:277:151,125:151:5369:125:4434:-315.826,0,-399.94	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2796	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:165:165,0:165:5865:0:0:0,-49.6699,-527.962	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:201:112,89:112:3963:89:3185:-226.366,0,-296.355	0/1:56:29,27:29:1040:27:968:-70.5797,0,-77.0567	0/1:49:21,28:21:747:28:1004:-75.9254,0,-52.8038	0/0:132:132,0:132:4736:0:0:0,-39.736,-426.397	0/1:149:89,60:89:3148:60:2132:-147.295,0,-238.689	0/1:249:124,125:124:4328:125:4472:-327.691,0,-314.74	0/1:165:76,89:76:2716:89:3170:-235.854,0,-195.014	0/0:112:112,0:112:3984:0:0:0,-33.7154,-358.75	0/1:199:98,101:98:3489:101:3624:-266.46,0,-254.313	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:198:198,0:198:7040:0:0:0,-59.6039,-633.663	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.517	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:132:64,67:64:2279:67:2404:-176.93,0,-165.685	0/0:68:67,1:67:2385:1:36:0,-16.8718,-211.308	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:25:13,12:13:447:12:432:-31.6954,0,-33.0319	0/1:88:46,42:46:1614:42:1499:-108.713,0,-119.054	0/0:92:91,1:91:3215:1:36:0,-24.0965,-285.974	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:237:236,1:236:8429:1:36:0,-67.7458,-755.016	0/0:291:288,2:288:10211:2:72:0,-80.8218,-912.088	0/1:73:44,29:44:1568:29:1027:-70.767,0,-119.436	0/0:107:107,0:107:3818:0:0:0,-32.2102,-343.817	0/1:269:120,149:120:4243:149:5312:-397.238,0,-301.046	0/1:157:57,100:57:2027:100:3565:-273.796,0,-135.44	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:97:57,40:57:2032:40:1423:-99.1668,0,-153.953	0/1:65:39,26:39:1375:26:933:-64.7223,0,-104.481	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:149:149,0:149:5307:0:0:0,-44.8535,-477.764	0/1:33:15,18:15:531:18:635:-47.543,0,-38.1879	0/0:193:193,0:193:6853:0:0:0,-58.0988,-616.817	0/0:191:191,0:191:6809:0:0:0,-57.4967,-612.883	0/1:152:81,71:81:2912:71:2548:-183.814,0,-216.558	0/1:61:32,29:32:1148:29:1044:-75.912,0,-85.267	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:166:166,0:166:5833:0:0:0,-49.971,-525.087	0/0:117:117,0:117:4155:0:0:0,-35.2205,-374.133	0/1:349:183,165:183:6508:165:5889:-425.002,0,-480.686	0/0:89:89,0:89:3144:0:0:0,-26.7917,-283.186	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.44	0/1:79:38,41:38:1352:41:1459:-107.824,0,-98.199	0/1:25:13,12:13:468:12:424:-30.9707,0,-34.9339	0/1:49:26,23:26:910:23:820:-59.372,0,-67.4636	0/0:54:54,0:54:1895:0:0:0,-16.2556,-170.825	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	0/1:27:14,13:14:496:13:456:-33.2454,0,-36.8465	0/1:51:19,32:19:676:32:1140:-87.5567,0,-45.8155	0/0:203:202,1:202:7210:1:36:0,-57.5108,-645.358	0/0:40:40,0:40:1411:0:0:0,-12.0412,-127.287
chr02	25277977	.	G	A	153820	PASS	AB=0.517333;ABP=16.7108;AC=134;AF=0.712766;AN=188;AO=7376;CIGAR=1X;DP=9927;DPB=9927;DPRA=43.1391;EPP=16019.8;EPPR=5527.24;GTI=3;LEN=1;MEANALT=1.06522;MQM=59.9879;MQMR=59.9878;NS=94;NUMALT=1;ODDS=0.937512;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263582;QR=90496;RO=2544;RPL=0;RPP=16019.8;RPPR=5527.24;RPR=7376;RUN=1;SAF=0;SAP=16019.8;SAR=7376;SRF=0;SRP=5527.24;SRR=2544;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:143:0,143:0:0:143:5131:-461.93,-43.0473,0	0/1:139:62,77:62:2228:77:2764:-207.158,0,-158.941	1/1:264:1,263:1:36:263:9393:-841.736,-75.8736,0	0/1:121:47,74:47:1692:74:2644:-201.782,0,-116.142	0/1:83:35,48:35:1232:48:1695:-127.849,0,-86.1958	0/1:153:64,89:64:2291:89:3160:-238.567,0,-160.393	0/1:108:48,60:48:1728:60:2150:-161.256,0,-123.294	0/1:98:30,68:30:1062:68:2411:-187.743,0,-66.389	0/1:93:42,51:42:1504:51:1824:-136.445,0,-107.659	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:59:34,25:34:1197:25:900:-63.5602,0,-90.2726	0/1:46:22,24:22:777:24:860:-63.8745,0,-56.403	0/1:49:24,25:24:852:25:896:-66.2099,0,-62.2499	0/1:39:19,20:19:675:20:716:-53.0275,0,-49.3368	0/1:29:12,17:12:432:17:604:-45.9607,0,-30.4913	1/1:32:0,32:0:0:32:1134:-102.367,-9.63296,0	1/1:33:1,32:1:32:32:1144:-100.07,-6.73468,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:252:142,110:142:5043:110:3929:-277.942,0,-378.158	1/1:166:1,165:1:36:165:5888:-526.432,-46.3727,0	1/1:186:0,186:0:0:186:6660:-599.474,-55.9916,0	0/1:111:51,60:51:1828:60:2144:-159.813,0,-131.387	1/1:127:0,127:0:0:127:4504:-405.528,-38.2308,0	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:501:2,499:2:72:499:17815:-1596.12,-143.979,0	1/1:206:0,206:0:0:206:7372:-663.525,-62.0122,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:316:157,159:157:5602:159:5680:-416.192,0,-409.02	0/1:178:86,92:86:3057:92:3269:-240.845,0,-221.775	0/1:136:63,73:63:2237:73:2581:-191.596,0,-160.652	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:121:73,48:73:2591:48:1728:-119.381,0,-197.012	0/1:281:131,150:131:4633:150:5373:-399.111,0,-332.531	0/1:18:4,14:4:131:14:504:-40.2796,0,-6.69493	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:165:0,165:0:0:165:5889:-530.12,-49.67,0	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	0/1:200:89,110:89:3147:110:3927:-293.167,0,-223.19	0/1:55:26,29:26:917:29:1029:-76.3654,0,-66.288	0/1:48:27,21:27:972:21:756:-53.9178,0,-73.3485	1/1:132:0,132:0:0:132:4709:-423.97,-39.736,0	0/1:148:60,86:60:2143:86:3070:-232.263,0,-148.87	0/1:244:121,123:121:4326:123:4388:-321.641,0,-316.064	0/1:165:86,77:86:3071:77:2747:-198.044,0,-227.191	1/1:114:0,114:0:0:114:4055:-365.138,-34.3174,0	0/1:201:102,99:102:3601:99:3547:-258.931,0,-263.787	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:195:0,195:0:0:195:6975:-627.812,-58.7009,0	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/1:131:65,66:65:2296:66:2345:-171.861,0,-167.465	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:25:12,13:12:432:13:460:-34.2096,0,-31.6954	0/1:86:42,44:42:1503:44:1584:-116.963,0,-109.675	1/1:91:1,90:1:36:90:3163:-281.296,-23.7955,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:238:1,237:1:36:237:8488:-760.32,-68.0469,0	1/1:292:2,290:2:72:290:10367:-926.111,-81.064,0	0/1:67:26,40:26:917:40:1424:-108.23,0,-62.6171	1/1:106:0,106:0:0:106:3792:-341.478,-31.9092,0	0/1:264:146,118:146:5169:118:4199:-298.621,0,-385.881	0/1:156:98,58:98:3508:58:2072:-139.79,0,-268.97	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:99:40,59:40:1432:59:2124:-161.626,0,-99.3756	0/1:66:27,39:27:968:39:1395:-105.98,0,-67.5694	1/1:21:0,21:0:0:21:747:-67.5543,-6.32163,0	1/1:147:0,147:0:0:147:5253:-472.906,-44.2514,0	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	1/1:190:0,190:0:0:190:6828:-614.587,-57.1957,0	1/1:192:0,191:0:0:191:6844:-615.669,-57.4967,0	0/1:145:68,77:68:2426:77:2760:-204.992,0,-174.945	0/1:59:28,31:28:1004:31:1116:-82.9909,0,-72.9151	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:162:0,162:0:0:162:5816:-523.551,-48.7669,0	1/1:116:0,116:0:0:116:4133:-372.153,-34.9195,0	0/1:344:163,181:163:5765:181:6474:-479.175,0,-415.412	1/1:89:0,89:0:0:89:3169:-285.435,-26.7917,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:64:0,64:0:0:64:2264:-204.021,-19.2659,0	0/1:76:38,38:38:1356:38:1355:-99.3714,0,-99.4622	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:48:22,26:22:770:26:926:-69.2079,0,-55.1699	1/1:52:0,52:0:0:52:1839:-165.789,-15.6536,0	0/1:16:7,9:7:248:9:320:-24.3259,0,-17.8477	0/1:28:14,14:14:495:14:504:-37.2693,0,-36.4542	0/1:50:31,19:31:1082:19:680:-46.4777,0,-82.6357	1/1:204:2,202:2:72:202:7248:-645.534,-54.5734,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0
chr02	25278004	.	G	C	42737.7	PASS	AB=0.487209;ABP=10.4542;AC=52;AF=0.276596;AN=188;AO=2562;CIGAR=1X;DP=9864;DPB=9864;DPRA=1.20251;EPP=5566.32;EPPR=15824.4;GTI=2;LEN=1;MEANALT=1.12281;MQM=59.9961;MQMR=59.9852;NS=94;NUMALT=1;ODDS=1.18838;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91584;QR=258664;RO=7290;RPL=2562;RPP=5566.32;RPPR=15824.4;RPR=0;RUN=1;SAF=0;SAP=5566.32;SAR=2562;SRF=0;SRP=15833;SRR=7290;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/0:144:144,0:144:5116:0:0:0,-43.3483,-460.587	0/1:139:77,62:77:2738:62:2206:-156.961,0,-204.819	0/0:261:260,0:260:9195:0:0:0,-78.2678,-827.175	0/1:122:73,48:73:2569:48:1716:-117.941,0,-194.676	0/1:84:49,35:49:1736:35:1244:-86.9781,0,-131.238	0/1:149:87,62:87:3092:62:2232:-156.29,0,-233.656	0/1:105:58,47:58:2052:47:1692:-120.959,0,-153.344	0/1:95:68,26:68:2428:26:936:-55.9028,0,-190.119	0/1:92:52,40:52:1847:40:1423:-100.672,0,-138.815	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/1:60:25,35:25:892:35:1244:-94.2029,0,-62.5379	0/1:46:24,22:24:844:22:792:-57.7583,0,-62.4315	0/1:48:24,24:24:856:24:860:-63.2724,0,-62.9117	0/1:40:20,20:20:708:20:712:-52.3655,0,-52.0044	0/1:28:16,12:16:568:12:423:-29.9762,0,-43.023	0/0:31:31,0:31:1089:0:0:0,-9.33193,-98.3173	0/0:33:33,0:33:1159:0:0:0,-9.93399,-104.616	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:255:111,144:111:3927:144:5136:-385.619,0,-276.864	0/0:166:165,1:165:5842:1:36:0,-46.3727,-522.301	0/0:184:180,1:180:6379:1:36:0,-51.248,-570.607	0/1:112:61,51:61:2131:51:1824:-130.726,0,-158.344	0/0:129:129,0:129:4578:0:0:0,-38.8329,-412.188	0/0:88:88,0:88:3135:0:0:0,-26.4906,-282.354	0/0:488:488,0:488:17323:0:0:0,-146.903,-1558.72	0/0:198:198,0:198:7063:0:0:0,-59.6039,-635.734	0/0:21:21,0:21:727:0:0:0,-6.32163,-65.7495	0/1:316:158,157:158:5608:157:5635:-412.233,0,-409.813	0/1:178:92,86:92:3263:86:3080:-223.845,0,-240.309	0/1:137:71,66:71:2520:66:2351:-170.608,0,-185.812	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:121:48,73:48:1712:73:2616:-199.263,0,-117.941	0/1:279:149,130:149:5289:130:4634:-333.229,0,-392.161	0/1:18:14,4:14:496:4:140:-7.52604,0,-39.5557	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:165:165,0:165:5875:0:0:0,-49.6699,-528.864	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:195:107,88:107:3807:88:3160:-225.923,0,-283.109	0/1:54:27,27:27:964:27:960:-70.4607,0,-70.8212	0/1:48:21,27:21:752:27:972:-73.3485,0,-53.5568	0/0:127:127,0:127:4532:0:0:0,-38.2308,-408.049	0/1:146:86,60:86:3051:60:2154:-150.177,0,-230.87	0/1:251:124,127:124:4409:127:4549:-334.017,0,-321.425	0/1:167:79,87:79:2812:87:3103:-229.166,0,-202.99	0/0:110:110,0:110:3900:0:0:0,-33.1133,-351.198	0/1:195:93,102:93:3296:102:3645:-269.552,0,-238.161	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:192:192,0:192:6827:0:0:0,-57.7978,-614.506	0/0:80:80,0:80:2813:0:0:0,-24.0824,-253.411	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:132:64,68:64:2276:68:2420:-178.319,0,-165.338	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/1:6:4,1:4:144:1:36:-1.7333,0,-11.4486	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/1:87:46,41:46:1614:41:1472:-106.587,0,-119.358	0/0:88:87,1:87:3090:1:36:0,-22.8924,-274.73	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:230:229,1:229:8140:1:36:0,-65.6386,-729.026	0/0:292:290,2:290:10298:2:72:0,-81.064,-919.834	0/1:70:42,28:42:1484:28:981:-67.5289,0,-112.782	0/0:105:105,0:105:3732:0:0:0,-31.6081,-336.083	0/1:267:116,149:116:4135:149:5308:-397.741,0,-292.222	0/1:156:56,100:56:1971:100:3592:-276.525,0,-130.704	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:96:55,41:55:1955:41:1472:-103.877,0,-147.326	0/1:66:38,28:38:1360:28:1004:-70.8079,0,-102.833	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:147:147,0:147:5202:0:0:0,-44.2514,-468.325	0/1:35:17,18:17:604:18:648:-48.1158,0,-44.1546	0/0:187:186,0:186:6605:0:0:0,-55.9916,-594.175	0/0:189:189,0:189:6727:0:0:0,-56.8947,-605.51	0/1:146:76,70:76:2732:70:2512:-182.381,0,-202.172	0/1:61:32,29:32:1119:29:1036:-75.1911,0,-82.654	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	0/0:165:165,0:165:5844:0:0:0,-49.6699,-525.588	0/0:116:116,0:116:4114:0:0:0,-34.9195,-370.446	0/1:350:184,166:184:6540:166:5924:-427.908,0,-483.329	0/0:85:85,0:85:2971:0:0:0,-25.5875,-267.624	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/0:60:60,0:60:2110:0:0:0,-18.0618,-190.169	0/1:76:36,40:36:1275:40:1427:-105.848,0,-92.174	0/1:25:13,12:13:455:12:432:-31.6954,0,-33.7562	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.937	0/0:52:52,0:52:1834:0:0:0,-15.6536,-165.339	0/1:16:9,7:9:324:7:243:-17.391,0,-24.6894	0/1:28:14,14:14:496:14:500:-36.9073,0,-36.5454	0/1:50:19,31:19:676:31:1099:-84.168,0,-46.1165	0/0:205:204,1:204:7202:1:36:0,-58.1129,-644.647	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768
chr02	25357589	.	CT	TT	100365	PASS	AB=0.513534;ABP=9.24081;AC=133;AF=0.707447;AN=188;AO=4980;CIGAR=1X1M;DP=6896;DPB=6896;DPRA=0;EPP=10808.3;EPPR=4120.14;GTI=3;LEN=1;MEANALT=1.09574;MQM=59.9922;MQMR=59.9958;NS=94;NUMALT=1;ODDS=0.0185023;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175383;QR=67334;RO=1904;RPL=4979;RPP=10808.3;RPPR=4120.14;RPR=1;RUN=1;SAF=4980;SAP=10816.9;SAR=0;SRF=1904;SRP=4137.49;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,51:0:0:51:1784:-160.48,-15.3525,0	1/1:97:3,94:3:103:94:3279:-285.724,-19.5952,0	0/1:163:76,87:76:2655:87:3053:-225.934,0,-190.125	0/1:190:94,96:94:3341:96:3354:-244.884,0,-243.712	0/1:61:25,34:25:882:34:1195:-89.7344,0,-61.578	0/1:34:14,20:14:489:20:707:-53.7196,0,-34.1044	0/1:63:24,39:24:856:39:1362:-103.906,0,-58.3964	0/1:101:46,54:46:1647:54:1898:-140.632,0,-118.055	0/1:68:27,41:27:963:41:1428:-108.342,0,-66.5167	0/1:54:19,35:19:671:35:1240:-95.6488,0,-44.4599	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:79:47,32:47:1644:32:1098:-75.3431,0,-124.462	0/1:70:40,30:40:1410:30:1014:-70.4879,0,-106.122	0/1:38:15,23:15:538:23:801:-60.9676,0,-37.3166	0/1:58:33,25:33:1149:25:887:-62.6884,0,-86.2537	0/1:46:30,16:30:1063:16:563:-37.1518,0,-82.1334	1/1:27:0,24:0:0:24:856:-77.0017,-7.22472,0	1/1:26:0,26:0:0:26:915:-82.6656,-7.82678,0	1/1:21:0,21:0:0:21:739:-66.8324,-6.32163,0	0/1:96:37,59:37:1308:59:2064:-157.13,0,-89.1205	1/1:169:0,169:0:0:169:5990:-539.21,-50.8741,0	1/1:83:0,83:0:0:83:2949:-265.643,-24.9855,0	0/1:113:49,64:49:1729:64:2242:-168.027,0,-121.875	1/1:43:0,43:0:0:43:1502:-135.472,-12.9443,0	1/1:69:0,69:0:0:69:2423:-218.327,-20.7711,0	1/1:169:0,169:0:0:169:6011:-541.097,-50.8741,0	1/1:214:0,214:0:0:214:7540:-678.653,-64.4204,0	1/1:29:0,29:0:0:29:1028:-92.833,-8.72987,0	0/1:188:96,92:96:3392:92:3211:-232.622,0,-248.902	0/1:90:40,50:40:1420:50:1773:-132.758,0,-101.004	0/1:102:41,61:41:1453:61:2147:-162.793,0,-100.361	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:36:21,15:21:752:15:505:-34.9321,0,-57.1694	0/1:126:62,64:62:2201:64:2275:-167.082,0,-160.424	0/1:120:64,55:64:2252:55:1956:-140.133,0,-166.76	0/1:39:23,16:23:800:16:559:-38.8974,0,-60.5757	0/1:7:1,6:1:28:6:216:-17.6833,0,-0.692517	1/1:81:0,81:0:0:81:2888:-260.157,-24.3834,0	0/1:19:4,15:4:142:15:536:-42.8552,0,-7.40964	0/1:145:61,84:61:2136:84:2938:-221.004,0,-148.855	0/1:34:19,15:19:678:15:523:-37.1629,0,-51.1137	0/1:44:18,26:18:635:26:915:-69.4202,0,-44.2314	1/1:72:0,72:0:0:72:2543:-229.121,-21.6742,0	0/1:129:65,64:65:2301:64:2247:-163.659,0,-168.517	0/1:144:64,80:64:2231:80:2834:-211.95,0,-157.704	0/1:72:31,41:31:1095:41:1448:-108.942,0,-77.1845	1/1:95:0,95:0:0:95:3322:-299.201,-28.5979,0	0/1:49:25,24:25:888:24:825:-59.813,0,-65.4882	0/1:7:2,5:2:70:5:180:-14.4449,0,-4.54012	1/1:107:0,107:0:0:107:3750:-337.707,-32.2102,0	1/1:44:0,44:0:0:44:1537:-138.62,-13.2453,0	0/1:19:7,12:7:252:12:415:-31.9607,0,-17.3094	0/1:140:86,54:86:3043:54:1885:-127.783,0,-231.956	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:11:5,6:5:180:6:201:-15.1057,0,-13.2407	0/1:48:26,22:26:927:22:752:-53.5447,0,-69.2988	1/1:84:0,84:0:0:84:2995:-269.782,-25.2865,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:145:0,145:0:0:145:5125:-461.395,-43.6494,0	1/1:124:0,124:0:0:124:4405:-396.624,-37.3277,0	0/1:41:21,20:21:741:20:694:-50.4382,0,-54.6702	1/1:98:0,98:0:0:98:3445:-310.267,-29.5009,0	0/1:167:67,100:67:2375:100:3544:-268.897,0,-163.734	0/1:92:53,39:53:1876:39:1400:-98.6044,0,-141.423	0/1:11:6,5:6:214:5:180:-13.2407,0,-16.2964	0/1:29:11,18:11:396:18:635:-48.7471,0,-27.2529	0/1:35:21,14:21:752:14:500:-34.8001,0,-57.4702	1/1:17:0,17:0:0:17:593:-53.6947,-5.11751,0	1/1:141:0,141:0:0:141:4910:-442.059,-42.4452,0	0/1:76:36,39:36:1279:39:1335:-97.613,0,-92.5823	1/1:117:0,116:0:0:116:4081:-367.118,-34.9195,0	1/1:126:1,125:1:36:125:4360:-388.986,-34.3315,0	0/1:97:42,55:42:1484:55:1951:-146.665,0,-104.653	0/1:96:48,48:48:1691:48:1699:-124.296,0,-123.576	0/1:23:10,13:10:356:13:444:-33.3604,0,-25.4578	1/1:119:0,118:0:0:118:4158:-374.046,-35.5215,0	1/1:119:0,119:0:0:119:4229:-380.792,-35.8226,0	0/1:94:40,53:40:1417:53:1858:-139.29,0,-99.6162	1/1:62:0,62:0:0:62:2215:-199.614,-18.6639,0	1/1:55:1,54:1:36:54:1923:-169.748,-12.9584,0	1/1:30:0,30:0:0:30:1048:-94.6273,-9.0309,0	0/1:94:53,41:53:1870:41:1424:-100.155,0,-140.28	0/1:19:9,10:9:322:10:356:-26.6617,0,-23.6046	0/1:55:26,29:26:930:29:1006:-74.2925,0,-67.4622	1/1:46:0,46:0:0:46:1613:-145.457,-13.8474,0	0/1:42:27,15:27:968:15:536:-35.9316,0,-74.7943	0/1:68:41,27:41:1448:27:947:-65.0737,0,-110.144	0/1:64:45,19:45:1603:19:684:-42.6244,0,-125.293	1/1:125:0,125:0:0:125:4440:-399.765,-37.6288,0	1/1:61:0,61:0:0:61:2167:-195.296,-18.3628,0
chr02	25357609	.	C	G	101306	PASS	AB=0.520462;ABP=16.8731;AC=133;AF=0.707447;AN=188;AO=4954;CIGAR=1X;DP=6787;DPB=6787;DPRA=0;EPP=10760.5;EPPR=3948.62;GTI=2;LEN=1;MEANALT=1.01064;MQM=59.9958;MQMR=59.9929;NS=94;NUMALT=1;ODDS=1.89363;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175876;QR=64430;RO=1829;RPL=4954;RPP=10760.5;RPPR=3948.62;RPR=0;RUN=1;SAF=4954;SAP=10760.5;SAR=0;SRF=1829;SRP=3974.63;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1840:-165.878,-15.6536,0	1/1:95:3,92:3:93:92:3280:-286.749,-19.926,0	0/1:161:72,85:72:2534:85:3021:-224.499,0,-180.688	0/1:187:93,94:93:3258:94:3356:-245.962,0,-237.147	0/1:58:25,33:25:882:33:1171:-88.2369,0,-62.2368	0/1:33:13,20:13:464:20:716:-54.8337,0,-32.1635	0/1:59:21,38:21:743:38:1325:-101.785,0,-49.4326	0/1:98:45,53:45:1593:53:1863:-138.446,0,-114.157	0/1:68:27,41:27:937:41:1460:-111.226,0,-64.1711	0/1:51:17,34:17:612:34:1216:-94.3491,0,-40.0609	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:74:45,29:45:1586:29:1019:-69.7451,0,-120.749	0/1:68:38,30:38:1331:30:1052:-74.5177,0,-99.619	0/1:39:15,24:15:540:24:864:-66.3424,0,-37.1964	0/1:58:33,25:33:1114:25:882:-62.2368,0,-83.0968	0/1:43:27,16:27:964:16:572:-38.8691,0,-74.1325	1/1:27:0,27:0:0:27:944:-85.2722,-8.12781,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:93:36,57:36:1283:57:1996:-151.914,0,-87.7768	1/1:172:0,172:0:0:172:6112:-550.182,-51.7772,0	1/1:88:0,88:0:0:88:3121:-281.117,-26.4906,0	0/1:110:47,63:47:1658:63:2204:-165.508,0,-116.393	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	1/1:68:0,68:0:0:68:2415:-217.606,-20.47,0	1/1:169:0,169:0:0:169:5959:-536.419,-50.8741,0	1/1:216:0,216:0:0:216:7704:-693.393,-65.0225,0	1/1:29:0,29:0:0:29:1023:-92.3817,-8.72987,0	0/1:186:93,93:93:3282:93:3302:-241.408,0,-239.611	0/1:89:39,50:39:1388:50:1770:-132.791,0,-98.4273	0/1:98:39,59:39:1357:59:2102:-159.947,0,-92.9225	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:34:20,14:20:711:14:500:-35.1012,0,-54.0806	0/1:123:60,63:60:2113:63:2248:-165.557,0,-153.411	0/1:117:62,55:62:2163:55:1951:-140.645,0,-159.715	0/1:39:23,16:23:810:16:558:-38.8063,0,-61.4788	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:83:0,83:0:0:83:2951:-265.824,-24.9855,0	0/1:18:4,14:4:135:14:504:-40.2796,0,-7.06397	0/1:144:59,85:59:2072:85:3024:-229.041,0,-143.4	0/1:33:19,14:19:676:14:500:-35.4022,0,-51.234	0/1:40:17,23:17:599:23:812:-61.3597,0,-42.1969	1/1:71:0,71:0:0:71:2501:-225.342,-21.3731,0	0/1:123:60,63:60:2136:63:2211:-162.224,0,-155.482	0/1:143:61,82:61:2167:82:2926:-220.528,0,-152.249	0/1:71:30,41:30:1056:41:1435:-108.069,0,-73.975	1/1:92:0,92:0:0:92:3254:-293.081,-27.6948,0	0/1:47:24,23:24:847:23:828:-60.6957,0,-62.4003	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:105:0,105:0:0:105:3748:-337.521,-31.6082,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/1:17:7,10:7:248:10:356:-27.2637,0,-17.5467	0/1:136:82,54:82:2838:54:1940:-133.936,0,-214.715	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:11:5,6:5:176:6:208:-15.7478,0,-12.8737	0/1:47:23,24:23:824:24:835:-61.3181,0,-60.3349	1/1:83:0,83:0:0:83:2928:-263.754,-24.9855,0	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	1/1:146:0,146:0:0:146:5162:-464.723,-43.9504,0	1/1:122:0,122:0:0:122:4368:-393.294,-36.7257,0	0/1:40:21,19:21:740:19:671:-48.6746,0,-54.8822	1/1:93:0,93:0:0:93:3327:-299.647,-27.9958,0	0/1:163:66,97:66:2347:97:3475:-263.893,0,-162.421	0/1:88:48,40:48:1711:40:1436:-103.047,0,-127.784	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/1:31:11,20:11:387:20:681:-52.2717,0,-25.834	0/1:35:21,14:21:740:14:500:-34.8001,0,-56.3873	1/1:17:0,17:0:0:17:603:-54.5995,-5.11751,0	1/1:143:0,143:0:0:143:5053:-454.919,-43.0473,0	0/1:76:37,39:37:1312:39:1368:-100.537,0,-95.5034	1/1:122:0,122:0:0:122:4315:-388.528,-36.7257,0	1/1:130:1,129:1:36:129:4561:-407.061,-35.5356,0	0/1:93:39,54:39:1366:54:1936:-146.521,0,-95.2411	0/1:91:45,46:45:1568:46:1636:-120.134,0,-114.014	0/1:23:9,14:9:311:14:495:-37.9593,0,-21.4	1/1:118:0,118:0:0:118:4209:-378.991,-35.5215,0	1/1:118:0,118:0:0:118:4199:-378.092,-35.5215,0	0/1:89:39,50:39:1366:50:1773:-133.059,0,-96.4428	1/1:62:0,62:0:0:62:2211:-199.254,-18.6639,0	1/1:53:1,52:1:36:52:1860:-164.081,-12.3563,0	1/1:30:0,30:0:0:30:1054:-95.1692,-9.0309,0	0/1:92:53,39:53:1896:39:1391:-97.7935,0,-143.223	0/1:18:8,10:8:271:10:360:-27.3258,0,-19.3009	0/1:55:26,29:26:912:29:1040:-77.3577,0,-65.8392	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:41:26,15:26:915:15:528:-35.5091,0,-70.3233	0/1:65:38,27:38:1352:27:960:-67.1493,0,-102.413	0/1:61:42,19:42:1470:19:684:-43.5275,0,-114.23	1/1:118:0,118:0:0:118:4182:-376.564,-35.5215,0	1/1:63:0,63:0:0:63:2226:-200.604,-18.9649,0
chr02	25367997	.	A	G	155746	PASS	AB=0.50857;ABP=25.6766;AC=94;AF=0.5;AN=188;AO=18070;CIGAR=1X;DP=35531;DPB=35531;DPRA=0;EPP=39224.1;EPPR=37875.7;GTI=0;LEN=1;MEANALT=1.12766;MQM=28.4843;MQMR=52.3142;NS=94;NUMALT=1;ODDS=138.886;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=639782;QR=623253;RO=17449;RPL=9110;RPP=5.71413;RPPR=8.34272;RPR=8960;RUN=1;SAF=9112;SAP=5.86025;SAR=8958;SRF=8623;SRP=8.13863;SRR=8826;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:256:110,146:110:3935:146:5161:-331.285,0,-272.395	0/1:491:216,275:216:7716:275:9714:-330.153,0,-544.508	0/1:574:261,313:261:9278:313:11042:-276.792,0,-653.185	0/1:861:391,469:391:13981:469:16518:-386.629,0,-990.726	0/1:243:131,112:131:4671:112:3960:-105.871,0,-343.65	0/1:124:62,61:62:2216:61:2143:-78.0804,0,-160.428	0/1:554:283,271:283:10080:271:9540:-220.18,0,-733.138	0/1:669:305,364:305:10898:364:12786:-342.668,0,-773.248	0/1:425:230,195:230:8217:195:6897:-221.586,0,-605.671	0/1:438:170,268:170:6069:268:9530:-252.694,0,-408.141	0/1:306:163,142:163:5830:142:5011:-209.254,0,-427.362	0/1:404:205,198:205:7299:198:7013:-230.494,0,-530.26	0/1:347:167,180:167:5965:180:6297:-182.784,0,-428.154	0/1:347:172,175:172:6129:175:6129:-164.153,0,-442.439	0/1:306:152,154:152:5440:154:5466:-136.806,0,-393.34	0/1:290:152,138:152:5379:138:4864:-134.831,0,-393.561	0/1:278:142,136:142:5037:136:4806:-140.576,0,-366.165	0/1:245:128,117:128:4556:117:4135:-137.593,0,-333.907	0/1:170:89,81:89:3184:81:2865:-134.092,0,-233.887	0/1:805:422,383:422:15082:383:13620:-501.762,0,-1101.38	0/1:542:269,273:269:9600:273:9640:-390.201,0,-693.894	0/1:266:122,144:122:4375:144:5088:-216.063,0,-308.876	0/1:377:201,176:201:7197:176:6285:-199.694,0,-527.657	0/1:404:196,207:196:7023:207:7355:-303.107,0,-507.188	0/1:368:188,179:188:6727:179:6294:-260.876,0,-489.123	0/1:1005:503,501:503:17948:501:17864:-571.156,0,-1301.42	0/1:1065:480,584:480:17186:584:20810:-900.306,0,-1213.95	0/1:125:66,59:66:2364:59:2112:-87.8079,0,-174.194	0/1:690:369,321:369:13196:321:11422:-297.421,0,-968.261	0/1:431:219,212:219:7842:212:7541:-177.083,0,-573.408	0/1:466:242,224:242:8647:224:7947:-194.091,0,-629.636	0/1:41:16,25:16:561:25:888:-31.9209,0,-38.0151	0/1:85:41,44:41:1467:44:1569:-86.7497,0,-103.331	0/1:43:21,22:21:756:22:767:-26.2751,0,-54.9477	0/1:41:32,9:32:1139:9:324:-14.8863,0,-89.6148	0/1:75:47,28:47:1684:28:1000:-31.8735,0,-127.956	0/1:808:422,386:422:15037:386:13642:-321.017,0,-1097.37	0/1:371:164,207:164:5863:207:7294:-165.369,0,-413.873	0/1:260:136,124:136:4855:124:4376:-147.821,0,-355.596	0/1:12:6,6:6:216:6:212:-7.01144,0,-15.9983	0/1:589:268,321:268:9576:321:11384:-398.289,0,-676.079	0/1:182:111,71:111:3941:71:2497:-65.1257,0,-297.031	0/1:568:268,299:268:9584:299:10628:-338.488,0,-684.166	0/1:318:158,160:158:5637:160:5665:-129.285,0,-408.594	0/1:265:140,125:140:4990:125:4447:-115.367,0,-366.441	0/1:493:242,251:242:8658:251:8835:-377.146,0,-623.6	0/1:424:202,222:202:7184:222:7877:-152.692,0,-514.734	0/1:705:363,342:363:12995:342:12052:-262.284,0,-947.414	0/1:279:127,152:127:4536:152:5385:-83.5225,0,-320.582	0/1:482:202,280:202:7251:280:9921:-325.199,0,-504.021	0/1:375:193,182:193:6919:182:6479:-180.714,0,-504.743	0/1:63:33,30:33:1175:30:1058:-22.2726,0,-86.4287	0/1:515:220,295:220:7877:295:10481:-427.235,0,-546.892	0/1:226:102,124:102:3645:124:4398:-223.402,0,-257.566	0/1:34:12,22:12:428:22:779:-25.186,0,-28.501	0/1:472:236,236:236:8452:236:8294:-249.721,0,-613.038	0/1:222:107,115:107:3848:115:4118:-178.601,0,-277.49	0/1:29:11,18:11:396:18:644:-15.4264,0,-26.9815	0/1:75:33,42:33:1188:42:1477:-52.7823,0,-84.0448	0/1:288:154,134:154:5516:134:4792:-156.138,0,-405.145	0/1:424:212,212:212:7532:212:7513:-314.449,0,-544.827	0/1:54:20,34:20:716:34:1193:-52.6823,0,-47.9267	0/1:578:293,285:293:10499:285:10178:-381.198,0,-762.646	0/1:704:268,436:268:9608:436:15421:-758.398,0,-645.379	0/1:283:129,154:129:4620:154:5457:-154.149,0,-328.792	0/1:314:181,133:181:6471:133:4731:-159.672,0,-482.062	0/1:553:301,252:301:10753:252:8911:-195.174,0,-789.066	0/1:383:201,182:201:7159:182:6473:-158.356,0,-524.653	0/1:245:125,120:125:4457:120:4258:-131.884,0,-323.253	0/1:232:94,138:94:3368:138:4934:-151.105,0,-231.346	0/1:341:177,164:177:6315:164:5838:-117.731,0,-462.569	0/1:89:44,45:44:1568:45:1584:-64.2514,0,-110.712	0/1:370:180,190:180:6420:190:6669:-343.236,0,-455.592	0/1:316:141,175:141:5052:175:6179:-172.672,0,-352.543	0/1:803:413,389:413:14727:389:13810:-706.025,0,-1067.18	0/1:578:255,323:255:9144:323:11445:-452.914,0,-642.757	0/1:430:225,205:225:8061:205:7231:-190.373,0,-589.591	0/1:517:252,265:252:8974:265:9402:-225.357,0,-645.219	0/1:54:30,24:30:1076:24:855:-33.8946,0,-80.0228	0/1:504:206,298:206:7375:298:10583:-400.123,0,-509.106	0/1:458:222,236:222:7930:236:8365:-341.058,0,-571.593	0/1:774:352,422:352:12572:422:14949:-396.228,0,-888.733	0/1:329:161,168:161:5764:168:5919:-213.888,0,-416.659	0/1:334:199,135:199:7116:135:4774:-224.868,0,-535.303	0/1:352:180,172:180:6419:172:6068:-180.522,0,-469.436	0/1:608:326,281:326:11597:281:9949:-222.332,0,-853.074	0/1:171:94,77:94:3343:77:2715:-57.5313,0,-247.283	0/1:286:152,134:152:5412:134:4722:-122.156,0,-396.079	0/1:315:151,164:151:5375:164:5754:-256.734,0,-386.14	0/1:243:121,122:121:4324:122:4317:-142.265,0,-312.858	0/1:428:222,205:222:7899:205:7211:-208.032,0,-574.739	0/1:343:189,154:189:6741:154:5485:-103.976,0,-499.14	0/1:462:227,235:227:8098:235:8278:-439.668,0,-582.168	0/1:444:233,211:233:8327:211:7473:-300.294,0,-608.134
chr02	25368003	.	T	A	119072	PASS	AB=0.371308;ABP=5072.82;AC=94;AF=0.5;AN=188;AO=13086;CIGAR=1X;DP=35243;DPB=35243;DPRA=0;EPP=28418.9;EPPR=48057.7;GTI=0;LEN=1;MEANALT=1.18085;MQM=35.0867;MQMR=43.0262;NS=94;NUMALT=1;ODDS=8.15153;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=467703;QR=787574;RO=22134;RPL=6632;RPP=8.2679;RPPR=3.80496;RPR=6454;RUN=1;SAF=6632;SAP=8.2679;SAR=6454;SRF=11021;SRP=3.84067;SRR=11113;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:262:112,150:112:3975:150:5348:-344.048,0,-273.901	0/1:484:215,269:215:7642:269:9626:-325.292,0,-540.072	0/1:564:412,152:412:14633:152:5447:-122.467,0,-792.253	0/1:853:646,207:646:22974:207:7408:-144.861,0,-1228.99	0/1:241:192,49:192:6847:49:1760:-46.3668,0,-398.592	0/1:124:95,29:95:3396:29:1030:-50.974,0,-192.56	0/1:548:430,118:430:15321:118:4216:-71.2719,0,-863.312	0/1:675:484,191:484:17267:191:6806:-168.858,0,-941.804	0/1:416:309,107:309:10957:107:3789:-137.868,0,-661.279	0/1:433:288,145:288:10251:145:5203:-132.4,0,-511.707	0/1:306:161,144:161:5702:144:5132:-216.42,0,-415.567	0/1:404:287,117:287:10233:117:4158:-146.686,0,-612.092	0/1:346:257,89:257:9090:89:3186:-89.0035,0,-519.137	0/1:342:253,89:253:8965:89:3187:-83.8931,0,-509.69	0/1:306:236,69:236:8403:69:2471:-54.3185,0,-473.147	0/1:293:224,68:224:7895:68:2411:-65.3305,0,-458.893	0/1:275:139,136:139:4919:136:4820:-145.037,0,-354.235	0/1:242:124,118:124:4411:118:4179:-140.583,0,-322.357	0/1:166:85,81:85:3039:81:2880:-137.088,0,-222.18	0/1:787:562,225:562:20013:225:8062:-355.636,0,-1199.56	0/1:541:265,276:265:9476:276:9904:-401.147,0,-682.083	0/1:267:120,147:120:4282:147:5263:-220.637,0,-299.562	0/1:373:271,101:271:9648:101:3636:-131.05,0,-584.419	0/1:399:190,209:190:6769:209:7438:-306.55,0,-485.138	0/1:367:186,181:186:6634:181:6469:-259.945,0,-481.749	0/1:994:491,501:491:17514:501:17901:-586.657,0,-1257.13	0/1:1065:473,591:473:16827:591:21138:-914.734,0,-1182.1	0/1:122:62,60:62:2203:60:2156:-89.9689,0,-160.698	0/1:690:528,162:528:18778:162:5806:-160.438,0,-1107.08	0/1:430:321,109:321:11422:109:3887:-67.9077,0,-671.011	0/1:450:324,126:324:11557:126:4509:-96.9481,0,-688.944	0/1:41:25,16:25:900:16:576:-23.3437,0,-45.9169	0/1:82:39,43:39:1400:43:1540:-86.4228,0,-98.274	0/1:43:21,22:21:733:22:769:-26.2529,0,-52.926	0/1:39:30,9:30:1048:9:324:-15.4883,0,-82.1275	0/1:73:61,12:61:2176:12:432:-14.9756,0,-141.73	0/1:806:626,179:626:22291:179:6411:-129.295,0,-1279.85	0/1:370:270,100:270:9664:100:3581:-59.9651,0,-517.902	0/1:261:191,70:191:6792:70:2497:-99.2747,0,-402.356	0/1:12:10,2:10:360:2:72:-3.22436,0,-19.855	0/1:588:267,320:267:9507:320:11491:-401.811,0,-665.92	0/1:181:145,36:145:5159:36:1288:-31.5908,0,-331.009	0/1:559:410,147:410:14592:147:5253:-191.815,0,-796.319	0/1:313:228,85:228:8106:85:3036:-56.9826,0,-468.842	0/1:262:201,61:201:7150:61:2184:-57.3811,0,-424.164	0/1:486:240,246:240:8526:246:8765:-379.149,0,-609.285	0/1:419:307,110:307:10920:110:3943:-42.3665,0,-606.649	0/1:708:541,167:541:19263:167:5979:-90.6262,0,-1119.36	0/1:274:206,68:206:7311:68:2429:-5.52346,0,-384.247	0/1:483:201,282:201:7181:282:10112:-327.596,0,-497.401	0/1:370:267,103:267:9523:103:3684:-105.718,0,-561.433	0/1:60:46,14:46:1627:14:504:-8.77312,0,-98.494	0/1:514:216,298:216:7686:298:10648:-437.393,0,-528.045	0/1:226:99,127:99:3532:127:4518:-223.815,0,-247.512	0/1:33:21,12:21:752:12:432:-15.6647,0,-37.9346	0/1:461:343,118:343:12243:118:4189:-129.529,0,-709.553	0/1:216:104,112:104:3691:112:4017:-180.861,0,-263.117	0/1:25:18,7:18:636:7:252:-5.99736,0,-29.3819	0/1:75:54,21:54:1923:21:747:-30.8668,0,-106.011	0/1:276:211,65:211:7515:65:2331:-85.584,0,-443.801	0/1:420:208,212:208:7405:212:7597:-315.525,0,-534.468	0/1:55:21,34:21:756:34:1215:-53.2786,0,-51.0952	0/1:586:295,291:295:10484:291:10424:-387.717,0,-756.615	0/1:703:266,437:266:9482:437:15576:-768.594,0,-634.437	0/1:279:204,75:204:7212:75:2688:-74.5531,0,-389.259	0/1:308:176,132:176:6261:132:4735:-161.051,0,-467.279	0/1:545:407,138:407:14473:138:4941:-84.9214,0,-877.019	0/1:375:312,62:312:11142:62:2224:-43.3118,0,-626.164	0/1:241:175,65:175:6216:65:2321:-75.6165,0,-363.303	0/1:231:162,69:162:5779:69:2480:-77.3045,0,-294.827	0/1:344:256,85:256:9089:85:3005:-43.0229,0,-527.079	0/1:86:41,45:41:1460:45:1600:-67.7019,0,-103.616	0/1:359:169,190:169:6055:190:6780:-354.894,0,-429.373	0/1:313:223,90:223:7943:90:3219:-87.8642,0,-432.263	0/1:808:410,397:410:14558:397:14228:-719.593,0,-1050.45	0/1:582:253,329:253:8996:329:11758:-464.322,0,-628.5	0/1:421:309,110:309:11016:110:3924:-100.366,0,-640.366	0/1:518:378,140:378:13463:140:5019:-95.8159,0,-769.352	0/1:52:42,10:42:1508:10:342:-15.4552,0,-92.4569	0/1:502:203,299:203:7238:299:10700:-412.637,0,-497.622	0/1:463:220,243:220:7803:243:8673:-355.318,0,-555.799	0/1:763:525,238:525:18705:238:8524:-228.163,0,-1027.12	0/1:323:161,162:161:5726:162:5789:-201.845,0,-412.891	0/1:337:201,136:201:7111:136:4860:-227.41,0,-534.225	0/1:348:177,171:177:6265:171:6131:-186.443,0,-457.133	0/1:603:466,135:466:16579:135:4800:-85.4282,0,-975.599	0/1:169:132,37:132:4687:37:1310:-18.4886,0,-277.698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chr02	25368015	.	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chr02	25403713	.	A	G	98153.7	PASS	AB=0.420251;ABP=637.517;AC=122;AF=0.648936;AN=188;AO=5865;CIGAR=1X;DP=12531;DPB=12531;DPRA=33.6747;EPP=12738.7;EPPR=14475.9;GTI=16;LEN=1;MEANALT=1.01075;MQM=59.9458;MQMR=59.9256;NS=94;NUMALT=1;ODDS=0.51701;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208764;QR=225632;RO=6665;RPL=3;RPP=12712.7;RPPR=14475.9;RPR=5862;RUN=1;SAF=3;SAP=12712.7;SAR=5862;SRF=6665;SRP=14475.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:468:-42.4371,-3.91339,0	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	1/1:91:0,91:0:0:91:3248:-292.542,-27.3937,0	0/1:355:198,157:198:6723:157:5615:-398.6,0,-498.265	0/1:127:75,52:75:2556:52:1834:-127.108,0,-192.067	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:259:179,80:179:5991:80:2846:-178.411,0,-461.371	1/1:93:0,93:0:0:93:3300:-297.212,-27.9958,0	1/1:64:0,64:0:0:64:2296:-206.711,-19.2659,0	0/1:174:97,77:97:3308:77:2752:-195.515,0,-245.553	0/1:55:47,8:47:1573:8:284:-9.3467,0,-125.287	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	1/1:28:1,27:1:32:27:972:-84.5993,-5.23021,0	0/1:89:56,33:56:1940:33:1158:-77.7334,0,-148.085	0/1:69:40,29:40:1332:29:1027:-71.8848,0,-98.9112	0/1:65:44,21:44:1528:21:735:-46.9045,0,-118.245	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:375:255,120:255:8570:120:4287:-273.121,0,-658.48	0/1:204:136,68:136:4676:68:2398:-154.667,0,-359.593	0/1:240:98,141:98:3297:141:5000:-377.845,0,-224.164	0/1:126:90,36:90:3008:36:1265:-76.2202,0,-233.019	0/1:181:140,41:140:4788:41:1455:-76.7542,0,-376.617	0/1:106:56,50:56:1956:50:1769:-127.582,0,-144.402	0/1:685:238,447:238:8026:447:15928:-1226.93,0,-516.21	0/1:366:247,119:247:8504:119:4233:-270.973,0,-655.185	0/1:32:21,11:21:724:11:388:-25.6244,0,-55.8465	0/1:721:362,359:362:11945:359:12804:-935.129,0,-857.961	0/1:254:155,99:155:5388:99:3517:-240.278,0,-408.591	0/1:215:117,98:117:3889:98:3461:-246.979,0,-285.503	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	0/1:18:10,8:10:344:8:280:-20.1208,0,-25.8735	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:279:124,155:124:4155:155:5528:-413.635,0,-290.157	0/1:326:211,115:211:7272:115:4075:-268.802,0,-555.416	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/1:236:153,83:153:5240:83:2968:-196.288,0,-400.72	0/1:39:23,16:23:784:16:576:-40.4348,0,-59.1351	0/1:187:131,56:131:4500:56:1995:-123.531,0,-348.19	0/1:64:40,24:40:1373:24:848:-57.3737,0,-104.599	0/1:62:35,27:35:1177:27:968:-68.7735,0,-87.5651	0/1:263:60,203:60:1995:203:7226:-571.216,0,-100.64	1/1:85:0,85:0:0:85:3028:-272.752,-25.5876,0	0/1:274:158,116:158:5263:116:4131:-289.493,0,-391.352	0/1:168:100,68:100:3346:68:2413:-166.853,0,-250.795	0/1:236:156,80:156:5298:80:2859:-186.503,0,-405.941	0/1:240:180,60:180:5991:60:2152:-121.7,0,-467.095	0/1:16:12,4:12:416:4:144:-8.49714,0,-32.9552	1/1:62:1,61:1:36:61:2176:-192.51,-15.0673,0	0/1:114:60,54:60:2021:54:1940:-140.559,0,-147.835	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:181:127,54:127:4364:54:1927:-119.22,0,-338.464	0/1:74:34,40:34:1152:40:1413:-105.189,0,-81.7038	0/1:15:12,3:12:393:3:104:-5.18736,0,-31.1702	0/1:37:27,10:27:888:10:345:-20.2427,0,-69.0854	0/1:158:114,44:114:3964:44:1567:-93.7581,0,-309.401	0/1:129:79,50:79:2647:50:1788:-122.37,0,-199.649	1/1:13:1,12:1:36:12:424:-34.8981,-0.315115,0	0/1:474:156,318:156:5212:318:11286:-872.872,0,-326.547	0/1:359:214,145:214:7194:145:5111:-352.063,0,-539.494	0/1:115:83,32:83:2872:32:1144:-68.6511,0,-224.106	0/1:122:74,48:74:2522:48:1707:-117.189,0,-190.509	0/1:194:100,94:100:3280:94:3339:-242.326,0,-237.03	0/1:189:139,50:139:4729:50:1792:-104.612,0,-368.896	0/1:25:18,7:18:628:7:252:-15.5032,0,-49.3197	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:109:56,53:56:1881:53:1892:-137.745,0,-136.756	0/1:43:30,13:30:1011:13:464:-29.1532,0,-78.3484	1/1:28:0,28:0:0:28:1004:-90.64,-8.42884,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:301:201,100:201:6920:100:3537:-227.908,0,-532.285	0/1:312:231,81:231:7793:81:2891:-166.505,0,-607.535	1/1:63:0,63:0:0:63:2240:-201.864,-18.9649,0	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:198:119,79:119:4068:79:2817:-194.16,0,-306.723	1/1:84:0,84:0:0:84:3000:-270.196,-25.2865,0	0/1:407:235,172:235:7842:172:6124:-428.466,0,-583.313	0/1:82:50,32:50:1699:32:1105:-75.0673,0,-128.507	0/1:81:50,31:50:1713:31:1112:-76.0079,0,-130.069	0/1:84:42,42:42:1410:42:1486:-108.747,0,-101.903	0/1:124:70,54:70:2380:54:1940:-137.548,0,-177.133	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:44:33,11:33:1120:11:392:-22.3747,0,-87.6966	0/1:69:53,16:53:1788:16:568:-30.6784,0,-140.324	0/1:59:35,24:35:1192:24:864:-60.3218,0,-89.8182	0/1:191:127,64:127:4290:64:2267:-146.793,0,-328.802	0/1:81:42,39:42:1439:39:1395:-101.465,0,-105.415
chr02	25403743	.	C	T	162946	PASS	AB=0.49317;ABP=5.0571;AC=133;AF=0.707447;AN=188;AO=6574;CIGAR=1X;DP=9156;DPB=9156;DPRA=14.0538;EPP=4633.17;EPPR=1873.35;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.9458;MQMR=59.9729;NS=94;NUMALT=1;ODDS=3.72445;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232037;QR=92407;RO=2581;RPL=5159;RPP=4633.17;RPPR=1873.35;RPR=1415;RUN=1;SAF=0;SAP=14278.3;SAR=6574;SRF=0;SRP=5607.58;SRR=2581;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:536:-48.5523,-4.51545,0	1/1:123:0,123:0:0:123:4349:-391.589,-37.0267,0	0/1:142:68,74:68:2408:74:2625:-193.751,0,-174.229	0/1:251:108,143:108:3869:143:5066:-380.52,0,-272.844	0/1:72:38,34:38:1364:34:1159:-82.933,0,-101.387	0/1:48:24,24:24:856:24:840:-61.4688,0,-62.9117	0/1:121:58,63:58:2075:63:2199:-161.75,0,-150.595	0/1:195:94,101:94:3335:101:3554:-261.369,0,-241.64	0/1:117:55,62:55:1957:62:2137:-157.317,0,-141.181	0/1:124:61,63:61:2188:63:2236:-164.148,0,-159.858	1/1:17:1,16:1:36:16:576:-48.5767,-1.51924,0	0/1:70:44,26:44:1576:26:928:-62.7662,0,-121.059	0/1:55:35,20:35:1245:20:699:-46.6758,0,-95.7945	0/1:57:32,25:32:1144:25:879:-62.2681,0,-86.1108	0/1:53:30,23:30:1080:23:824:-58.5287,0,-81.5587	0/1:44:19,25:19:680:25:892:-67.3544,0,-48.2554	1/1:56:0,56:0:0:56:1971:-177.664,-16.8577,0	1/1:47:0,47:0:0:47:1656:-149.328,-14.1484,0	1/1:25:1,24:1:36:24:833:-71.6866,-3.92748,0	0/1:221:127,94:127:4553:94:3283:-229.161,0,-343.406	1/1:156:0,156:0:0:156:5497:-494.719,-46.9607,0	1/1:131:0,131:0:0:131:4620:-415.967,-39.4349,0	0/1:57:19,38:19:684:38:1329:-102.748,0,-44.7316	1/1:73:1,72:1:36:72:2541:-225.338,-18.3769,0	1/1:89:0,89:0:0:89:3110:-279.274,-26.7917,0	1/1:442:2,439:2:68:439:15461:-1384.7,-126.55,0	1/1:201:0,201:0:0:201:7120:-640.864,-60.507,0	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	0/1:352:189,163:189:6764:163:5718:-408.776,0,-502.868	0/1:166:63,103:63:2264:103:3657:-279.363,0,-154.051	0/1:187:84,103:84:3012:103:3645:-271.593,0,-215.018	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:152:82,70:82:2933:70:2492:-178.768,0,-218.446	0/1:214:93,121:93:3340:121:4281:-321.048,0,-236.396	0/1:50:22,28:22:792:28:992:-74.5429,0,-56.5542	0/1:3:1,2:1:36:2:64:-5.1756,0,-2.69518	1/1:164:0,164:0:0:164:5764:-518.865,-49.3689,0	0/1:32:13,19:13:468:19:676:-51.535,0,-32.8267	0/1:92:66,26:66:2364:26:932:-56.5041,0,-185.324	0/1:43:22,21:22:792:21:737:-53.7063,0,-58.6614	0/1:45:24,21:24:856:21:741:-53.4376,0,-63.8132	1/1:198:1,197:1:36:197:6994:-625.93,-56.0057,0	0/1:161:79,82:79:2836:82:2908:-213.492,0,-207.006	0/1:194:112,82:112:4009:82:2901:-202.926,0,-302.597	0/1:113:58,55:58:2088:55:1939:-140.769,0,-154.173	1/1:176:0,176:0:0:176:6245:-562.132,-52.9813,0	0/1:57:28,29:28:985:29:1020:-74.9534,0,-71.8028	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	1/1:117:1,116:1:36:116:4097:-365.321,-31.6222,0	1/1:54:0,54:0:0:54:1906:-171.814,-16.2556,0	0/1:18:6,12:6:216:12:428:-33.4399,0,-14.372	0/1:116:78,38:78:2793:38:1333:-85.3483,0,-216.671	1/1:64:0,64:0:0:64:2288:-206.182,-19.2659,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:85:31,54:31:1116:54:1924:-147.849,0,-75.1641	1/1:96:0,96:0:0:96:3408:-306.934,-28.8989,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:312:2,310:2:72:310:10938:-977.439,-87.0846,0	1/1:238:1,237:1:36:237:8306:-743.593,-68.0469,0	0/1:71:33,38:33:1173:38:1337:-99.2548,0,-84.5024	1/1:94:0,94:0:0:94:3303:-297.488,-28.2968,0	0/1:173:89,84:89:3185:84:2964:-214.916,0,-234.794	0/1:95:57,38:57:2044:38:1356:-93.7426,0,-155.634	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:54:31,23:31:1116:23:801:-56.1511,0,-84.4961	0/1:51:27,24:27:972:24:860:-62.3678,0,-72.4454	1/1:22:0,22:0:0:22:757:-68.446,-6.62266,0	1/1:59:0,59:0:0:59:2087:-188.098,-17.7608,0	0/1:55:25,30:25:896:30:1056:-78.7942,0,-64.4037	1/1:206:0,206:0:0:206:7267:-654.091,-62.0122,0	1/1:144:0,144:0:0:144:5114:-460.408,-43.3483,0	0/1:124:64,60:64:2292:60:2077:-149.87,0,-169.214	0/1:113:50,63:50:1800:63:2202:-164.427,0,-128.266	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:150:1,149:1:36:149:5274:-471.201,-41.5562,0	1/1:146:1,145:1:36:145:5130:-458.247,-40.3521,0	0/1:285:145,140:145:5195:140:4926:-357.697,0,-381.895	1/1:75:2,73:2:72:73:2589:-226.422,-15.7405,0	1/1:56:0,56:0:0:56:1988:-179.194,-16.8577,0	1/1:74:0,74:0:0:74:2628:-236.768,-22.2762,0	0/1:94:46,48:46:1652:48:1709:-125.797,0,-120.671	0/1:26:20,6:20:716:6:216:-11.9637,0,-56.9409	0/1:57:28,29:28:1008:29:1028:-75.6743,0,-73.8776	1/1:41:0,41:0:0:41:1456:-131.336,-12.3422,0	0/1:19:9,10:9:320:10:360:-27.0247,0,-23.4228	0/1:39:18,21:18:636:21:744:-55.5442,0,-45.8255	0/1:45:32,13:32:1144:13:448:-27.0888,0,-89.7232	1/1:107:0,107:0:0:107:3766:-339.142,-32.2102,0	1/1:73:0,73:0:0:73:2600:-234.249,-21.9752,0
chr02	25403754	.	A	G	43111.1	PASS	AB=0.496887;ABP=3.4429;AC=55;AF=0.292553;AN=188;AO=2571;CIGAR=1X;DP=9400;DPB=9400;DPRA=1.32467;EPP=5585.87;EPPR=14821.1;GTI=2;LEN=1;MEANALT=1.04762;MQM=59.9685;MQMR=59.9503;NS=94;NUMALT=1;ODDS=2.54978;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91882;QR=244419;RO=6824;RPL=2571;RPP=5585.87;RPPR=14821.1;RPR=0;RUN=1;SAF=0;SAP=5585.87;SAR=2571;SRF=0;SRP=14821.1;SRR=6824;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.914	0/0:128:128,0:128:4569:0:0:0,-38.5318,-411.375	0/1:141:76,65:76:2713:65:2336:-168.054,0,-201.967	0/1:256:151,105:151:5405:105:3746:-260.276,0,-409.5	0/1:77:39,38:39:1400:38:1364:-99.8814,0,-103.12	0/1:50:26,24:26:928:24:845:-61.3156,0,-68.7868	0/1:125:66,59:66:2372:59:2104:-152,0,-176.109	0/1:196:102,94:102:3652:94:3363:-243.873,0,-269.882	0/1:116:61,55:61:2154:55:1978:-143.373,0,-159.015	0/1:129:66,63:66:2372:63:2260:-164.83,0,-174.876	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:68:26,42:26:919:42:1495:-114.374,0,-62.5561	0/1:55:19,36:19:680:36:1292:-100.026,0,-44.9725	0/1:58:26,32:26:923:32:1111:-82.8337,0,-65.927	0/1:56:24,32:24:864:32:1152:-87.0461,0,-61.2249	0/1:45:26,19:26:927:19:684:-48.3155,0,-70.201	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.708	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/1:226:97,129:97:3480:129:4607:-346.761,0,-245.378	0/0:162:162,0:162:5798:0:0:0,-48.7669,-521.818	0/0:142:142,0:142:5084:0:0:0,-42.7463,-457.702	0/1:58:39,19:39:1396:19:680:-44.0694,0,-108.478	0/0:76:75,1:75:2700:1:36:0,-19.28,-239.641	0/0:93:92,0:92:3304:0:0:0,-27.6948,-296.362	0/0:451:450,1:450:16113:1:36:0,-132.166,-1446.25	0/0:209:209,0:209:7486:0:0:0,-62.9153,-673.778	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:363:176,187:176:6295:187:6697:-493.532,0,-457.354	0/1:170:106,64:106:3796:64:2272:-153.565,0,-290.663	0/1:189:104,84:104:3724:84:2997:-213.131,0,-278.53	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:154:72,82:72:2558:82:2911:-215.865,0,-184.108	0/1:215:123,92:123:4401:92:3284:-231.059,0,-331.54	0/1:51:27,24:27:964:24:864:-62.73,0,-71.7243	0/1:3:2,1:2:72:1:21:-1.19686,0,-5.93363	0/0:173:173,0:173:6211:0:0:0,-52.0782,-559.061	0/1:33:20,13:20:720:13:468:-32.5257,0,-55.1948	0/1:94:30,64:30:1080:64:2280:-177.166,0,-69.2164	0/1:44:21,23:21:756:23:828:-61.5988,0,-55.1219	0/1:46:22,24:22:784:24:860:-63.8729,0,-57.0081	0/0:205:205,0:205:7340:0:0:0,-61.7111,-660.646	0/1:160:83,77:83:2957:77:2754:-199.937,0,-218.195	0/1:192:81,111:81:2899:111:3950:-297.893,0,-203.347	0/1:112:55,56:55:1972:56:1999:-146.409,0,-143.981	0/0:184:184,0:184:6592:0:0:0,-55.3895,-593.338	0/1:60:32,28:32:1148:28:996:-71.8931,0,-85.568	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:122:119,1:119:4272:1:36:0,-32.8852,-381.056	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.759	0/1:18:12,6:12:432:6:212:-14.0063,0,-33.8023	0/1:121:41,80:41:1476:80:2863:-221.465,0,-96.7115	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:10:5,5:5:180:5:171:-12.7152,0,-13.5418	0/1:90:58,32:58:2052:32:1146:-76.3571,0,-157.857	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:319:318,1:318:11420:1:36:0,-92.4303,-1023.97	0/0:245:244,1:244:8719:1:36:0,-70.1541,-781.028	0/1:76:42,34:42:1508:34:1224:-87.5888,0,-113.136	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:177:88,89:88:3164:89:3192:-234.221,0,-231.701	0/1:95:37,58:37:1324:58:2088:-159.592,0,-90.8642	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:54:23,31:23:828:31:1112:-84.1357,0,-58.5885	0/1:51:25,26:25:892:26:936:-69.2069,0,-65.2456	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:55:30,25:30:1076:25:892:-64.043,0,-80.5962	0/0:212:212,0:212:7600:0:0:0,-63.8184,-684.014	0/0:155:155,0:155:5560:0:0:0,-46.6596,-500.523	0/1:127:65,62:65:2290:62:2219:-161.743,0,-168.128	0/1:112:64,48:64:2288:48:1701:-119.659,0,-172.466	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:154:153,1:153:5459:1:36:0,-42.7603,-487.839	0/0:149:148,1:148:5300:1:36:0,-41.2552,-473.536	0/1:292:148,144:148:5324:144:5134:-374.3,0,-391.383	0/0:76:74,2:74:2656:2:72:0,-16.0416,-232.449	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/1:96:50,46:50:1788:46:1656:-120.429,0,-132.304	0/1:26:6,20:6:216:20:716:-56.9409,0,-11.9637	0/1:59:31,28:31:1112:28:1008:-73.2756,0,-82.6306	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:39:21,18:21:756:18:648:-46.9094,0,-56.6271	0/1:45:13,32:13:468:32:1146:-89.9031,0,-28.8995	0/0:115:114,1:114:4091:1:36:0,-31.0202,-364.776	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243
chr02	25436198	.	T	C	40650.2	PASS	AB=0.416774;ABP=378.193;AC=52;AF=0.276596;AN=188;AO=2607;CIGAR=1X;DP=11522;DPB=11522;DPRA=0.987462;EPP=5664.04;EPPR=19357.3;GTI=3;LEN=1;MEANALT=1.01754;MQM=59.9916;MQMR=59.9878;NS=94;NUMALT=1;ODDS=0.153998;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93331;QR=319390;RO=8913;RPL=0;RPP=5664.04;RPPR=19357.3;RPR=2607;RUN=1;SAF=2607;SAP=5664.04;SAR=0;SRF=8913;SRP=19357.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/0:145:145,0:145:5200:0:0:0,-43.6493,-468.138	0/1:96:67,29:67:2408:29:1036:-64.655,0,-188.077	0/1:251:145,106:145:5169:106:3792:-265.92,0,-389.748	0/1:96:65,31:65:2317:31:1104:-70.7718,0,-179.89	0/1:116:70,46:70:2485:46:1652:-114.049,0,-188.983	0/1:164:93,71:93:3328:71:2548:-180.2,0,-250.369	0/1:174:92,82:92:3300:82:2927:-211.285,0,-244.839	0/1:139:97,42:97:3480:42:1504:-93.8114,0,-271.568	0/1:126:82,44:82:2944:44:1576:-104.202,0,-227.241	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:111:54,57:54:1944:57:2039:-150.367,0,-141.822	0/1:101:57,44:57:2052:44:1584:-112.447,0,-154.547	0/1:99:56,43:56:1996:43:1540:-109.091,0,-150.112	0/1:76:39,37:39:1392:37:1320:-96.2237,0,-102.701	0/1:90:51,39:51:1836:39:1404:-99.5666,0,-138.428	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.518	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/1:219:153,66:153:5484:66:2372:-147.812,0,-427.761	0/0:152:152,0:152:5445:0:0:0,-45.7566,-490.176	0/0:159:159,0:159:5688:0:0:0,-47.8638,-512.037	0/1:141:95,46:95:3393:46:1644:-105.803,0,-263.139	0/0:236:236,0:236:8460:0:0:0,-71.0431,-761.4	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.824	0/0:446:446,0:446:15943:0:0:0,-134.259,-1434.55	0/0:316:316,0:316:11305:0:0:0,-95.1255,-1017.31	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:292:150,142:150:5388:142:5064:-368.006,0,-397.148	0/1:119:83,36:83:2968:36:1296:-81.1214,0,-231.531	0/1:200:112,88:112:3985:88:3151:-223.608,0,-298.635	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:248:124,124:124:4456:124:4456:-326.553,0,-326.553	0/1:111:44,67:44:1568:67:2388:-181.764,0,-107.997	0/1:68:36,32:36:1288:32:1148:-83.1598,0,-95.7535	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:268:268,0:268:9604:0:0:0,-80.676,-864.311	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	0/1:152:111,41:111:3984:41:1464:-86.2995,0,-312.993	0/1:107:63,44:63:2264:44:1576:-109.921,0,-171.812	0/1:107:65,42:65:2336:42:1508:-103.804,0,-178.289	0/0:148:148,0:148:5300:0:0:0,-44.5524,-477.135	0/1:82:43,39:43:1536:39:1404:-101.975,0,-113.849	0/1:205:142,63:142:5093:63:2234:-139.609,0,-396.693	0/1:145:69,76:69:2472:76:2724:-201.754,0,-179.084	0/0:128:128,0:128:4600:0:0:0,-38.5318,-414.162	0/1:204:120,84:120:4296:84:3008:-209.541,0,-325.407	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:98:97,1:97:3488:1:36:0,-25.9027,-310.531	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:151:95,56:95:3404:56:2012:-135.898,0,-261.119	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:125:76,49:76:2732:49:1756:-120.695,0,-208.493	0/0:137:137,0:137:4924:0:0:0,-41.2411,-443.308	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:202:201,1:201:7204:1:36:0,-57.2098,-644.815	0/0:362:361,0:361:12960:0:0:0,-108.672,-1166	0/1:111:59,52:59:2116:52:1853:-133.627,0,-157.294	0/0:126:126,0:126:4512:0:0:0,-37.9298,-406.248	0/1:166:96,70:96:3429:70:2504:-175.642,0,-258.851	0/1:55:18,37:18:644:37:1324:-102.905,0,-41.7339	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:82:44,38:44:1561:38:1353:-97.3839,0,-116.095	0/1:141:84,57:84:2993:57:2031:-140.615,0,-227.155	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:117:112,4:112:4000:4:140:0,-22.3327,-347.244	0/1:74:35,39:35:1260:39:1400:-104.023,0,-91.4293	0/0:325:325,0:325:11621:0:0:0,-97.8347,-1045.76	0/0:221:221,0:221:7932:0:0:0,-66.5276,-713.901	0/1:163:94,69:94:3376:69:2480:-174.385,0,-254.987	0/1:116:76,40:76:2716:40:1432:-94.2581,0,-209.764	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:178:177,1:177:6340:1:36:0,-49.9851,-567.092	0/0:121:120,1:120:4304:1:36:0,-32.8264,-383.938	0/1:203:153,50:153:5461:50:1788:-100.094,0,-430.509	0/0:143:143,0:143:5140:0:0:0,-43.0473,-462.739	0/0:93:93,0:93:3348:0:0:0,-27.9958,-301.535	0/0:144:144,0:144:5172:0:0:0,-43.3483,-465.618	0/1:239:129,110:129:4636:110:3940:-282.846,0,-345.265	0/1:52:32,20:32:1148:20:712:-48.7531,0,-87.9763	0/1:130:77,53:77:2768:53:1896:-131.784,0,-210.227	0/1:111:60,51:60:2147:51:1815:-130.216,0,-160.082	0/1:44:27,17:27:964:17:612:-42.1681,0,-73.8315	0/1:72:30,42:30:1076:42:1512:-114.7,0,-75.4787	0/1:94:35,59:35:1260:59:2124:-163.131,0,-85.4087	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.866
chr02	25436229	.	A	G	182461	PASS	AB=0.580409;ABP=348.732;AC=136;AF=0.723404;AN=188;AO=8781;CIGAR=1X;DP=11382;DPB=11382;DPRA=0;EPP=19036;EPPR=5594.64;GTI=3;LEN=1;MEANALT=1.05319;MQM=59.985;MQMR=59.9773;NS=94;NUMALT=1;ODDS=0.686922;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312294;QR=92862;RO=2595;RPL=8776;RPP=19027.3;RPPR=5594.64;RPR=5;RUN=1;SAF=8780;SAP=19062;SAR=1;SRF=2595;SRP=5637.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:96:0,96:0:0:96:3413:-307.384,-28.8989,0	1/1:145:0,145:0:0:145:5161:-464.631,-43.6494,0	0/1:94:30,64:30:1062:64:2254:-174.825,0,-67.5932	0/1:251:106,145:106:3804:145:5173:-390.15,0,-266.998	0/1:97:31,66:31:1112:66:2368:-184.178,0,-71.1914	0/1:114:45,69:45:1616:69:2437:-185.267,0,-111.413	0/1:162:72,90:72:2572:90:3183:-237.929,0,-182.962	0/1:168:82,86:82:2936:86:3075:-226.405,0,-213.901	0/1:134:39,95:39:1400:95:3395:-265.427,0,-85.9612	0/1:122:43,79:43:1544:79:2790:-214.613,0,-102.527	1/1:57:1,56:1:36:56:1995:-176.225,-13.5604,0	0/1:110:56,54:56:1987:54:1914:-139.423,0,-145.99	0/1:100:43,57:43:1531:57:2007:-150.797,0,-107.979	0/1:100:44,56:44:1575:56:1983:-148.64,0,-111.938	0/1:78:39,39:39:1382:39:1382:-101.197,0,-101.197	0/1:89:40,49:40:1427:49:1747:-130.722,0,-101.935	1/1:130:0,130:0:0:130:4595:-413.713,-39.1339,0	1/1:87:0,87:0:0:87:3107:-279.857,-26.1896,0	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	0/1:216:63,153:63:2260:153:5478:-428.122,0,-138.64	1/1:146:0,146:0:0:146:5165:-464.994,-43.9504,0	1/1:153:0,153:0:0:153:5457:-491.258,-46.0576,0	0/1:140:49,91:49:1748:91:3243:-249.947,0,-115.46	1/1:235:0,235:0:0:235:8328:-749.536,-70.7421,0	1/1:116:0,116:0:0:116:4097:-368.916,-34.9195,0	1/1:436:0,434:0:0:434:15483:-1392.82,-130.647,0	1/1:311:0,311:0:0:311:11086:-997.624,-93.6203,0	1/1:49:1,48:1:36:48:1694:-149.146,-11.1522,0	0/1:289:142,147:142:5068:147:5223:-383.212,0,-369.269	0/1:120:36,84:36:1292:84:2970:-231.411,0,-80.4602	0/1:201:90,111:90:3223:111:3937:-294.015,0,-229.557	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:9:0,9:0:0:9:302:-27.5051,-2.70927,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:247:124,123:124:4431:123:4359:-318.132,0,-324.604	0/1:111:69,42:69:2468:42:1500:-101.88,0,-188.96	0/1:66:31,35:31:1108:35:1234:-91.4947,0,-80.163	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:263:0,262:0:0:262:9339:-840.118,-78.8699,0	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/1:152:41,111:41:1463:111:3964:-311.196,0,-86.2087	0/1:105:43,62:43:1548:62:2224:-168.816,0,-108.005	0/1:102:41,61:41:1472:61:2171:-164.951,0,-102.071	1/1:144:0,144:0:0:144:5140:-462.741,-43.3483,0	0/1:84:41,43:41:1476:43:1518:-111.625,0,-107.85	0/1:203:64,139:64:2292:139:4950:-384.496,0,-145.432	0/1:146:77,69:77:2760:69:2450:-176.804,0,-204.691	1/1:131:0,130:0:0:130:4639:-417.401,-39.1339,0	0/1:200:82,118:82:2940:118:4189:-316.973,0,-204.628	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:96:1,95:1:36:95:3412:-303.694,-25.3006,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	0/1:149:57,92:57:2040:92:3285:-251.016,0,-138.983	1/1:94:0,94:0:0:94:3331:-300.008,-28.2968,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:3,5:3:108:5:171:-13.3172,0,-7.66693	0/1:121:46,75:46:1640:75:2696:-206.459,0,-111.464	1/1:136:0,136:0:0:136:4833:-435.124,-40.9401,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:200:2,198:2:68:198:7084:-631.161,-53.7483,0	1/1:362:1,361:1:32:361:12829:-1151.24,-105.774,0	0/1:109:51,58:51:1832:58:2072:-153.938,0,-132.262	1/1:124:0,123:0:0:123:4334:-389.877,-37.0267,0	0/1:162:68,94:68:2444:94:3331:-251.242,0,-171.448	0/1:55:37,18:37:1328:18:636:-41.0114,0,-103.266	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	0/1:79:36,43:36:1288:43:1540:-115.112,0,-92.4422	0/1:139:57,82:57:2048:82:2906:-219.933,0,-142.748	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:118:3,115:3:108:115:4091:-358.303,-25.4464,0	0/1:71:36,35:36:1292:35:1248:-91.2517,0,-95.2106	1/1:325:0,325:0:0:325:11556:-1039.92,-97.8348,0	1/1:221:0,221:0:0:221:7895:-710.577,-66.5276,0	0/1:157:67,90:67:2400:90:3200:-240.963,0,-168.995	0/1:113:38,75:38:1352:75:2667:-206.26,0,-87.964	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:178:1,177:1:36:177:6290:-562.598,-49.9851,0	1/1:120:0,120:0:0:120:4264:-383.939,-36.1236,0	0/1:197:48,149:48:1716:149:5262:-414.419,0,-95.4227	1/1:142:2,139:2:68:139:4920:-436.489,-36.3407,0	1/1:91:0,91:0:0:91:3251:-292.811,-27.3937,0	1/1:140:0,140:0:0:140:5003:-450.417,-42.1442,0	0/1:237:111,126:111:3975:126:4461:-330.311,0,-286.596	0/1:51:19,32:19:684:32:1126:-86.2941,0,-46.5378	0/1:132:53,79:53:1900:79:2773:-210.073,0,-131.542	0/1:109:53,56:53:1891:56:1980:-145.66,0,-137.655	0/1:43:16,27:16:568:27:959:-73.6811,0,-38.5076	0/1:73:43,30:43:1531:30:1071:-74.7264,0,-116.107	0/1:91:54,37:54:1940:37:1320:-91.7082,0,-147.482	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:133:0,133:0:0:133:4720:-424.952,-40.037,0
chr02	25436282	.	C	T	312983	PASS	AB=0.514385;ABP=25.1887;AC=129;AF=0.68617;AN=188;AO=15415;CIGAR=1X;DP=22422;DPB=22422;DPRA=0;EPP=33224.8;EPPR=14928.9;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9803;MQMR=59.967;NS=94;NUMALT=1;ODDS=14.5469;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=544639;QR=250485;RO=7005;RPL=15386;RPP=33224.8;RPPR=14937.5;RPR=29;RUN=1;SAF=0;SAP=33476.3;SAR=15415;SRF=1;SRP=15205.5;SRR=7004;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:99:0,99:0:0:99:3477:-313.146,-29.802,0	1/1:107:0,107:0:0:107:3800:-342.201,-32.2102,0	0/1:177:85,92:85:3036:92:3240:-238.544,0,-220.185	0/1:236:113,123:113:4032:123:4337:-319.468,0,-292.019	0/1:80:36,44:36:1292:44:1547:-115.439,0,-92.5014	0/1:45:9,36:9:320:36:1265:-100.604,0,-15.596	0/1:79:21,58:21:752:58:2033:-159.46,0,-44.2249	0/1:171:80,91:80:2876:91:3232:-239.628,0,-207.593	0/1:154:88,66:88:3147:66:2333:-163.87,0,-237.096	0/1:110:58,52:58:2071:52:1840:-132.767,0,-153.547	1/1:354:1,353:1:36:353:12593:-1129.61,-102.966,0	0/1:118:53,65:53:1892:65:2280:-169.938,0,-135.037	0/1:85:40,45:40:1432:45:1612:-119.783,0,-103.59	0/1:48:21,27:21:756:27:964:-72.6274,0,-53.9178	0/1:76:32,44:32:1139:44:1572:-118.893,0,-79.9401	0/1:109:57,52:57:2044:52:1848:-133.788,0,-151.42	1/1:37:0,37:0:0:37:1303:-117.555,-11.1381,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:142:0,142:0:0:142:5064:-455.907,-42.7463,0	0/1:147:59,88:59:2101:88:3069:-232.188,0,-145.105	1/1:167:0,167:0:0:167:5916:-532.555,-50.272,0	1/1:146:0,146:0:0:146:5161:-464.637,-43.9504,0	0/1:156:73,83:73:2620:83:2921:-216.166,0,-189.087	1/1:99:0,99:0:0:99:3490:-314.313,-29.802,0	1/1:132:0,132:0:0:132:4632:-416.966,-39.736,0	1/1:374:0,374:0:0:374:13253:-1192.59,-112.585,0	1/1:317:0,317:0:0:317:11120:-1000.72,-95.4265,0	1/1:40:0,40:0:0:40:1412:-127.377,-12.0412,0	0/1:372:152,220:152:5460:220:7744:-585.025,0,-379.543	0/1:52:13,39:13:468:39:1388:-109.565,0,-26.8061	0/1:122:62,60:62:2216:60:2067:-149.571,0,-162.979	0/0:659:638,21:638:22805:21:736:0,-131.816,-1985.28	1/1:529:3,526:3:108:526:18583:-1661.99,-149.17,0	1/1:875:1,874:1:36:874:30881:-2774.75,-259.803,0	1/1:2572:1,2571:1:36:2571:90893:-8173.28,-770.651,0	0/1:1325:532,793:532:19021:793:28062:-2125.94,0,-1312.28	0/1:183:80,103:80:2868:103:3652:-273.799,0,-203.268	0/1:155:68,87:68:2423:87:3084:-231.131,0,-171.666	0/1:220:172,48:172:6151:48:1724:-89.2188,0,-487.185	0/1:596:308,287:308:11016:287:10125:-731.672,0,-811.861	1/1:78:1,77:1:36:77:2724:-241.807,-19.8821,0	0/1:185:76,109:76:2736:109:3868:-292.628,0,-190.791	0/1:248:114,134:114:4048:134:4725:-350.76,0,-289.853	0/1:75:21,54:21:756:54:1940:-152.299,0,-45.79	0/1:62:29,33:29:1035:33:1184:-88.2045,0,-74.7969	1/1:160:0,160:0:0:160:5673:-510.693,-48.1648,0	0/1:149:69,80:69:2476:80:2824:-209.548,0,-178.24	0/1:195:79,116:79:2820:116:4096:-310.131,0,-195.337	0/1:86:38,48:38:1352:48:1704:-127.757,0,-96.0918	1/1:135:1,134:1:36:134:4745:-423.614,-37.0408,0	0/1:138:59,79:59:2116:79:2710:-202.595,0,-149.167	0/1:825:448,377:448:16014:377:13136:-933.74,0,-1192.59	1/1:179:1,178:1:36:178:6270:-560.806,-50.2861,0	1/1:70:0,70:0:0:70:2498:-225.073,-21.0721,0	0/0:184:171,13:171:6119:13:464:0,-13.292,-508.713	0/1:142:46,96:46:1648:96:3362:-260.054,0,-105.862	1/1:73:0,73:0:0:73:2600:-234.249,-21.9752,0	0/1:1033:513,520:513:18329:520:18349:-1340.06,0,-1338.23	0/1:333:243,90:243:8621:90:3146:-183.124,0,-675.646	0/1:85:31,54:31:1095:54:1889:-144.699,0,-73.2715	1/1:110:1,109:1:36:109:3881:-345.887,-29.515,0	1/1:276:2,274:2:72:274:9519:-849.862,-76.2476,0	1/1:144:2,142:2:72:142:5028:-445.836,-36.5116,0	1/1:189:0,189:0:0:189:6619:-595.577,-56.8947,0	0/1:97:39,58:39:1404:58:2052:-155.752,0,-97.4594	1/1:141:1,140:1:36:140:4908:-438.283,-38.847,0	0/1:196:96,100:96:3428:100:3560:-261.608,0,-249.733	0/1:303:223,80:223:7974:80:2828:-163.549,0,-626.47	0/0:205:186,19:186:6653:19:676:0,-0.54315,-537.679	0/1:81:47,34:47:1676:34:1200:-83.9222,0,-126.744	0/1:52:26,26:26:932:26:917:-67.191,0,-68.5453	1/1:265:0,265:0:0:265:9356:-842.019,-79.773,0	1/1:100:0,100:0:0:100:3560:-320.61,-30.103,0	0/1:89:31,58:31:1108:58:2036:-156.721,0,-73.2393	1/1:188:1,187:1:36:187:6597:-590.219,-52.9954,0	1/1:250:0,250:0:0:250:8802:-792.186,-75.2575,0	0/1:146:74,72:74:2652:72:2560:-186.701,0,-194.785	0/1:124:54,70:54:1936:70:2468:-185.048,0,-137.189	0/1:1178:578,599:578:20675:599:21193:-1552.19,0,-1504.46	1/1:131:2,129:2:72:129:4520:-400.139,-32.5982,0	1/1:102:0,102:0:0:102:3608:-324.93,-30.7051,0	0/1:182:92,90:92:3300:90:3176:-231.28,0,-242.431	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	1/1:96:1,95:1:32:95:3388:-301.937,-25.6996,0	1/1:60:0,60:0:0:60:2136:-192.508,-18.0618,0	0/1:175:84,91:84:3008:91:3248:-239.862,0,-218.271	0/1:34:18,16:18:648:16:576:-41.94,0,-48.4169	0/1:78:36,42:36:1288:42:1495:-111.364,0,-92.7432	0/1:87:37,50:37:1328:50:1788:-135.013,0,-93.6326	0/1:371:175,196:175:6263:196:6968:-515.509,0,-452.082	0/1:692:349,343:349:12497:343:12204:-889.901,0,-916.116	0/1:82:53,29:53:1896:29:1028:-68.1486,0,-146.234	1/1:67:1,66:1:36:66:2340:-207.257,-16.5707,0	1/1:129:0,129:0:0:129:4596:-413.807,-38.8329,0
chr02	25436291	.	TGAT	TGAC,CGAC	480358	PASS	AB=0.508433,0.486932;ABP=10.7376,21.5694;AC=129,59;AF=0.68617,0.31383;AN=188;AO=15519,7120;CIGAR=3M1X,1X2M1X;DP=22748;DPB=22748.2;DPRA=0,2.10145;EPP=33702.1,15463.9;EPPR=26.8965;GTI=0;LEN=1,4;MEANALT=2.5,2.98485;MQM=59.9797,59.9678;MQMR=60;NS=94;NUMALT=2;ODDS=14.3621;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,68;PQR=0;PRO=0;QA=554208,251694;QR=382;RO=11;RPL=15519,7120;RPP=33702.1,15463.9;RPPR=26.8965;RPR=0,0;RUN=1,1;SAF=0,0;SAP=33702.1,15463.9;SAR=15519,7120;SRF=0;SRP=26.8965;SRR=11;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:97:0,97,0:0:0:97,0:3451,0:-310.804,-29.1999,0,-310.804,-29.1999,-310.804	1/1:106:0,106,0:0:0:106,0:3765,0:-339.048,-31.9092,0,-339.048,-31.9092,-339.048	1/2:185:0,94,87:0:0:94,87:3368,3047:-522.653,-247.966,-219.67,-274.735,0,-248.545	1/2:235:0,119,114:0:0:119,114:4256,4029:-675.162,-328.121,-292.298,-347.037,0,-312.719	1/2:81:0,44,37:0:0:44,37:1576,1318:-236.313,-107.783,-94.5381,-128.886,0,-117.748	1/2:44:0,35,9:0:0:35,9:1252,311:-127.716,-25.6148,-15.0788,-102.449,0,-99.7398	1/2:80:0,58,22:0:0:58,22:2084,788:-234.634,-64.6225,-47.1627,-170.37,0,-163.748	1/2:176:0,89,85:0:0:89,85:3184,2980:-502.121,-242.482,-215.691,-259.633,0,-234.045	1/2:156:0,65,89:0:0:65,89:2316,3154:-445.714,-256.935,-237.368,-188.774,0,-161.982	1/2:112:0,54,57:0:0:54,57:1928,2011:-320.989,-163.802,-147.547,-157.24,0,-140.081	1/1:350:0,349,1:0:0:349,1:12443,36:-1119.35,-105.059,0,-1116.41,-101.762,-1116.11	1/2:120:0,65,55:0:0:65,55:2320,1942:-347.629,-158.499,-138.932,-189.485,0,-172.929	1/2:86:0,46,39:0:0:46,39:1648,1378:-246.624,-112.218,-98.3709,-134.401,0,-122.661	1/2:49:0,26,23:0:0:26,23:927,802:-141.142,-65.5738,-57.7471,-75.9206,0,-68.9969	1/2:78:0,44,32:0:0:44,32:1580,1140:-221.858,-92.9673,-79.722,-128.939,0,-119.306	1/2:108:0,51,57:0:0:51,57:1809,2022:-312.476,-165.093,-149.741,-147.737,0,-130.578	1/1:36:0,36,0:0:0:36,0:1274,0:-114.961,-10.8371,0,-114.961,-10.8371,-114.961	1/1:48:0,48,0:0:0:48,0:1702,0:-153.464,-14.4494,0,-153.464,-14.4494,-153.464	1/1:143:0,143,0:0:0:143,0:5124,0:-461.302,-43.0473,0,-461.302,-43.0473,-461.302	1/2:148:0,87,60:0:0:87,60:3124,2101:-425.778,-170.936,-144.746,-254.836,0,-236.774	1/1:169:0,167,0:0:0:167,0:5972,0:-537.228,-50.272,0,-537.228,-50.272,-537.228	1/1:147:0,147,0:0:0:147,0:5249,0:-472.547,-44.2514,0,-472.547,-44.2514,-472.547	1/2:160:0,83,75:0:0:83,75:2959,2646:-456.652,-215.45,-190.465,-241.197,0,-218.62	1/1:98:0,98,0:0:0:98,0:3504,0:-315.571,-29.5009,0,-315.571,-29.5009,-315.571	1/1:138:0,138,0:0:0:138,0:4924,0:-443.275,-41.5421,0,-443.275,-41.5421,-443.275	1/1:385:0,380,0:0:0:380,0:13565,0:-1220.33,-114.391,0,-1220.33,-114.391,-1220.33	1/1:333:0,333,0:0:0:333,0:11872,0:-1068.34,-100.243,0,-1068.34,-100.243,-1068.34	1/1:41:0,39,0:0:0:39,0:1400,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/2:378:0,221,155:0:0:221,155:7924,5537:-1097.73,-451.437,-384.91,-646.295,0,-599.636	1/2:55:0,44,11:0:0:44,11:1548,394:-158.497,-32.4902,-19.2449,-126.364,0,-123.052	1/2:130:0,64,66:0:0:64,66:2296,2312:-375.754,-188.473,-169.207,-187.635,0,-167.767	2/2:666:0,20,639:0:0:20,639:697,22560:-2029.49,-1972.81,-1966.79,-192.358,-135.684,0	1/1:539:0,534,3:0:0:534,3:19061,108:-1714.7,-160.75,0,-1705.89,-151.905,-1704.99	1/1:893:0,889,1:0:0:889,1:31725,36:-2853.91,-267.616,0,-2850.98,-264.669,-2850.68	1/1:2607:0,2587,6:0:0:2587,6:92310,212:-8303.14,-778.765,0,-8285.88,-761.49,-8284.07	1/2:1351:1,801,546:1:36:801,546:28671,19221:-3899.59,-1561.83,-1323.64,-2335.19,0,-2173.77	1/2:184:0,103,81:0:0:103,81:3687,2867:-534.554,-233.884,-202.878,-301.026,0,-276.643	1/2:157:0,86,70:0:0:86,70:3073,2470:-451.786,-201.23,-175.342,-250.659,0,-229.587	1/2:226:0,50,175:0:0:50,175:1788,6180:-648.969,-503.175,-488.123,-145.791,0,-93.1111	1/2:606:0,290,316:0:0:290,316:10351,11183:-1754.98,-911.247,-823.948,-844.083,0,-748.958	1/1:80:0,80,0:0:0:80,0:2819,0:-253.952,-24.0824,0,-253.952,-24.0824,-253.952	1/2:188:0,110,78:0:0:110,78:3912,2779:-545.675,-226.871,-193.758,-319.16,0,-295.679	1/2:252:1,133,118:1:36:133,118:4756,4157:-723.005,-335.499,-298.399,-384.864,0,-352.28	1/2:75:0,53,22:0:0:53,22:1893,770:-217.339,-62.9973,-47.0427,-154.694,0,-148.071	1/2:61:0,31,30:0:0:31,30:1099,1054:-175.644,-86.138,-76.8061,-89.8591,0,-80.8282	1/1:162:1,161,0:1:30:161,0:5756,0:-515.157,-45.7673,0,-515.458,-48.4658,-517.856	1/2:151:0,81,68:0:0:81,68:2886,2420:-432.522,-197.284,-172.901,-235.292,0,-214.822	1/2:198:0,116,81:0:0:116,81:4160,2848:-571.214,-231.905,-196.985,-339.392,0,-315.008	1/2:86:1,45,40:1:36:45,40:1605,1386:-240.234,-109.694,-99.0854,-127.895,0,-118.791	1/1:141:0,139,1:0:0:139,1:4929,36:-443.442,-41.8432,0,-440.504,-38.8658,-440.203	1/2:139:0,80,59:0:0:80,59:2853,2102:-404.233,-171.688,-147.606,-232.901,0,-215.14	1/2:838:0,379,454:0:0:379,454:13545,16098:-2415.94,-1311.54,-1197.45,-1104.44,0,-967.77	1/1:188:1,187,0:1:36:187,0:6707,0:-600.105,-52.9954,0,-600.406,-56.2926,-603.343	1/1:66:0,65,0:0:0:65,0:2321,0:-208.789,-19.567,0,-208.789,-19.567,-208.789	2/2:190:0,12,177:0:0:12,177:43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chr02	25443574	.	G	A	67014.9	PASS	AB=0.533269;ABP=72.9416;AC=56;AF=0.301075;AN=186;AO=3886;CIGAR=1X;DP=12510;DPB=12510;DPRA=1.00532;EPP=8441.35;EPPR=18716.8;GTI=0;LEN=1;MEANALT=1.03175;MQM=59.7748;MQMR=59.9757;NS=93;NUMALT=1;ODDS=3.21138;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138750;QR=308185;RO=8618;RPL=0;RPP=8441.35;RPPR=18716.8;RPR=3886;RUN=1;SAF=3886;SAP=8441.35;SAR=0;SRF=8618;SRP=18716.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:214:213,1:213:7570:1:36:0,-60.8221,-677.742	0/1:148:52,96:52:1868:96:3433:-264.593,0,-123.847	0/1:304:129,175:129:4628:175:6220:-468.092,0,-325.155	0/1:96:45,51:45:1616:51:1780:-131.577,0,-116.831	0/1:84:42,42:42:1489:42:1501:-110.094,0,-109.008	0/1:182:76,105:76:2716:105:3772:-284.975,0,-189.986	0/1:192:91,101:91:3268:101:3632:-269.141,0,-236.54	0/1:165:72,93:72:2557:93:3325:-249.631,0,-180.692	0/1:105:32,73:32:1148:73:2624:-204.784,0,-71.831	0/0:132:132,0:132:4736:0:0:0,-39.736,-426.397	0/1:132:66,66:66:2368:66:2357:-172.641,0,-173.642	0/1:122:68,54:68:2435:54:1929:-137.053,0,-182.679	0/1:107:51,56:51:1828:56:2008:-148.781,0,-132.59	0/1:115:63,52:63:2253:52:1868:-133.752,0,-168.413	0/1:101:50,51:50:1758:51:1828:-134.375,0,-128.096	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.432	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.445	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/1:298:133,165:133:4750:165:5909:-442.186,0,-337.948	0/0:230:229,0:229:8186:0:0:0,-68.9359,-736.391	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:121:48,73:48:1713:73:2594:-197.28,0,-118.029	0/0:73:73,0:73:2613:0:0:0,-21.9752,-235.416	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/0:447:446,0:446:15973:0:0:0,-134.259,-1436.79	0/0:329:329,0:329:11763:0:0:0,-99.0389,-1058.53	0/0:58:57,0:57:2052:0:0:0,-17.1587,-184.592	0/1:420:181,239:181:6483:239:8542:-642.319,0,-457.077	0/1:166:77,89:77:2764:89:3170:-235.516,0,-199.03	0/1:228:137,91:137:4908:91:3259:-224.892,0,-373.236	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	.:.:.:.:.:.:.:.	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2564	0/1:15:4,11:4:144:11:366:-28.7431,0,-8.79817	0/1:278:149,129:149:5337:129:4620:-332.189,0,-396.775	0/1:277:131,146:131:4677:146:5214:-386.011,0,-337.586	0/1:96:55,41:55:1961:41:1476:-104.236,0,-147.865	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:217:216,1:216:7715:1:36:0,-61.7252,-690.781	0/1:68:33,35:33:1172:35:1260:-93.2354,0,-85.3175	0/1:164:84,80:84:3016:80:2846:-205.903,0,-222.301	0/1:133:55,78:55:1980:78:2807:-212.743,0,-138.437	0/1:89:41,48:41:1468:48:1709:-127.253,0,-105.624	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:184:80,103:80:2872:103:3637:-272.069,0,-203.268	0/1:234:109,125:109:3904:125:4462:-331.295,0,-281.112	0/1:99:52,47:52:1849:47:1692:-122.752,0,-136.886	0/0:210:209,1:209:7504:1:36:0,-59.618,-671.791	0/1:110:40,70:40:1440:70:2471:-189.514,0,-96.7835	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:184:184,0:184:6570:0:0:0,-55.3895,-591.38	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/1:20:3,17:3:108:17:612:-49.3924,0,-4.05457	0/1:220:113,107:113:4029:107:3772:-273.441,0,-296.571	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.007	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:38:17,21:17:608:21:752:-56.5667,0,-43.6129	0/1:112:58,54:58:2080:54:1929:-140.168,0,-153.755	0/0:166:165,1:165:5924:1:36:0,-46.3727,-529.668	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:276:276,0:276:9855:0:0:0,-83.0843,-886.891	0/0:146:146,0:146:5229:0:0:0,-43.9504,-470.746	0/1:42:13,29:13:464:29:1044:-81.3134,0,-29.4542	0/0:133:132,1:132:4729:1:36:0,-36.4387,-422.166	0/1:208:109,99:109:3897:99:3537:-255.908,0,-288.308	0/1:137:30,107:30:1076:107:3814:-302.195,0,-55.9117	0/1:64:33,31:33:1158:31:1112:-81.0838,0,-85.2591	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:140:71,69:71:2544:69:2450:-178.604,0,-187.066	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:107:106,1:106:3797:1:36:0,-28.6119,-338.321	0/1:113:56,57:56:2007:57:2051:-150.674,0,-146.886	0/0:297:297,0:297:10557:0:0:0,-89.4059,-950.043	0/0:228:228,0:228:8146:0:0:0,-68.6348,-733.154	0/1:185:70,115:70:2516:115:4076:-311.31,0,-170.998	0/1:160:77,83:77:2756:83:2950:-217.552,0,-200.117	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/0:153:152,0:152:5383:0:0:0,-45.7566,-484.239	0/0:148:148,0:148:5290:0:0:0,-44.5524,-476.232	0/1:135:62,73:62:2216:73:2599:-193.514,0,-159.066	0/0:133:133,0:133:4767:0:0:0,-40.037,-429.186	0/0:123:123,0:123:4407:0:0:0,-37.0267,-396.801	0/0:147:147,0:147:5264:0:0:0,-44.2514,-473.896	0/1:183:99,84:99:3524:84:3020:-216.934,0,-262.28	0/1:66:26,40:26:936:40:1430:-109.107,0,-64.6915	0/1:102:55,47:55:1972:47:1684:-121.137,0,-147.049	0/1:99:45,54:45:1616:54:1929:-144.083,0,-115.928	0/1:91:51,40:51:1832:40:1440:-102.493,0,-137.767	0/1:154:86,68:86:3084:68:2441:-173.578,0,-231.429	0/1:92:34,58:34:1220:58:2069:-158.783,0,-82.412	0/0:168:167,1:167:5939:1:36:0,-46.9748,-531.017	0/0:170:170,0:170:6084:0:0:0,-51.1751,-547.662
chr02	25448447	.	CACC	CACT,TACT	162151	PASS	AB=0.555681,0.440027;ABP=122.227,141.314;AC=132,56;AF=0.702128,0.297872;AN=188;AO=5675,1953;CIGAR=3M1X,1X2M1X;DP=7660;DPB=7660.5;DPRA=82.3548,1.02336;EPP=12317.4,4226.54;EPPR=18.2106;GTI=3;LEN=1,4;MEANALT=1.83871,2.24561;MQM=59.9905,59.9002;MQMR=60;NS=94;NUMALT=2;ODDS=1.13626;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=1;QA=203181,69211;QR=233;RO=7;RPL=1,1;RPP=12317.4,4235.21;RPPR=18.2106;RPR=5674,1952;RUN=1,1;SAF=5675,1952;SAP=12326.1,4235.21;SAR=0,1;SRF=7;SRP=18.2106;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50,0:0:0:50,0:1778,0:-160.293,-15.0515,0,-160.293,-15.0515,-160.293	1/1:76:0,76,0:0:0:76,0:2711,0:-244.234,-22.8783,0,-244.234,-22.8783,-244.234	1/2:128:0,84,43:0:0:84,43:3012,1507:-368.289,-122.618,-97.3311,-245.664,0,-232.72	1/2:207:1,122,84:1:33:122,84:4373,2968:-595.426,-239.066,-205.008,-354.018,0,-331.399	1/2:66:0,43,23:0:0:43,23:1548,824:-193.87,-67.5599,-54.6156,-126.669,0,-119.745	1/2:36:0,24,12:0:0:24,12:860,431:-105.657,-35.5183,-28.2936,-70.4971,0,-66.8848	1/2:62:0,29,32:0:0:29,32:1040,1129:-176.812,-91.9828,-83.253,-84.8826,0,-75.2496	1/2:71:0,43,28:0:0:43,28:1532,978:-204.779,-79.9029,-66.9586,-125.228,0,-116.799	1/2:113:0,63,50:0:0:63,50:2262,1756:-327.793,-143.27,-124.305,-184.878,0,-169.826	1/2:47:0,29,18:0:0:29,18:1040,622:-135.718,-50.8837,-42.1538,-85.1845,0,-79.766	1/1:83:0,83,0:0:0:83,0:2966,0:-267.173,-24.9855,0,-267.173,-24.9855,-267.173	1/2:132:0,58,73:0:0:58,73:2088,2614:-383.544,-213.173,-195.713,-170.37,0,-148.395	1/2:128:1,49,78:1:30:49,78:1755,2787:-367.716,-224.892,-212.539,-140.784,0,-119.701	1/2:60:0,28,31:0:0:28,31:1004,1099:-171.486,-89.5948,-81.166,-81.9548,0,-72.6229	1/2:102:0,56,45:0:0:56,45:2008,1600:-294.241,-130.461,-113.604,-163.854,0,-150.308	1/2:80:0,42,38:0:0:42,38:1512,1346:-233.375,-110.001,-97.3573,-123.731,0,-112.292	1/1:39:0,39,0:0:0:39,0:1404,0:-126.659,-11.7402,0,-126.659,-11.7402,-126.659	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/1:39:0,39,0:0:0:39,0:1400,0:-126.299,-11.7402,0,-126.299,-11.7402,-126.299	1/2:116:0,65,51:0:0:65,51:2317,1809:-336.606,-147.739,-128.172,-189.223,0,-173.87	1/1:160:0,160,0:0:0:160,0:5716,0:-514.556,-48.1648,0,-514.556,-48.1648,-514.556	1/1:76:0,76,0:0:0:76,0:2719,0:-244.953,-22.8783,0,-244.953,-22.8783,-244.953	1/2:74:0,51,23:0:0:51,23:1832,815:-216.2,-66.7474,-51.3949,-149.808,0,-142.885	1/1:62:0,62,0:0:0:62,0:2196,0:-197.903,-18.6639,0,-197.903,-18.6639,-197.903	1/1:52:0,52,0:0:0:52,0:1868,0:-168.399,-15.6536,0,-168.399,-15.6536,-168.399	1/1:208:0,206,0:0:0:206,0:7359,0:-662.083,-62.0122,0,-662.083,-62.0122,-662.083	1/1:231:0,231,0:0:0:231,0:8277,0:-744.938,-69.5379,0,-744.938,-69.5379,-744.938	1/1:46:0,46,0:0:0:46,0:1652,0:-148.968,-13.8474,0,-148.968,-13.8474,-148.968	1/2:217:0,122,95:0:0:122,95:4370,3347:-629.242,-272.85,-236.124,-356.747,0,-328.149	1/2:69:0,39,30:0:0:39,30:1404,1066:-201.677,-87.1144,-75.3743,-114.919,0,-105.888	1/2:79:0,43,36:0:0:43,36:1548,1265:-229.496,-103.182,-90.2379,-126.669,0,-115.832	1/2:2:0,1,1:0:0:1,1:36,35:-6.14,-3.1976,-2.89657,-3.29724,0,-2.99621	1/1:8:0,8,0:0:0:8,0:279,0:-25.4475,-2.40824,0,-25.4475,-2.40824,-25.4475	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:11:0,6,4:0:0:6,4:212,143:-28.9217,-11.6587,-9.85254,-17.2605,0,-16.0564	1/2:209:0,109,100:0:0:109,100:3902,3556:-608.35,-290.145,-257.333,-318.561,0,-288.458	1/2:62:0,39,23:0:0:39,23:1393,806:-179.51,-65.9351,-54.1949,-113.928,0,-107.004	1/2:66:0,42,24:0:0:42,24:1499,837:-190.63,-68.4212,-55.7779,-122.561,0,-115.336	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:84:0,84,0:0:0:84,0:2994,0:-269.691,-25.2865,0,-269.691,-25.2865,-269.691	1/2:40:0,19,21:0:0:19,21:684,752:-117.497,-61.6848,-55.9652,-56.1708,0,-49.8491	1/2:73:0,39,34:0:0:39,34:1387,1203:-211.365,-98.3401,-86.5999,-113.38,0,-103.145	1/2:71:0,39,32:0:0:39,32:1391,1130:-205.768,-92.3744,-80.6342,-113.748,0,-104.115	1/2:66:0,28,37:0:0:28,37:996,1295:-186.454,-105.281,-96.8518,-81.1664,0,-70.0283	1/1:102:0,100,0:0:0:100,0:3595,0:-323.396,-30.103,0,-323.396,-30.103,-323.396	1/2:65:0,40,25:0:0:40,25:1437,872:-188.503,-71.2692,-59.228,-117.587,0,-110.061	1/2:123:0,84,39:0:0:84,39:3011,1382:-358.245,-112.667,-87.3801,-245.934,0,-234.193	1/2:64:0,41,21:0:0:41,21:1468,753:-181.126,-61.4104,-49.0682,-119.714,0,-113.392	1/1:123:3,120,0:3:99:120,0:4308,0:-378.658,-27.7895,0,-379.561,-36.1236,-387.565	1/2:91:0,52,39:0:0:52,39:1853,1382:-263.976,-112.937,-97.2838,-151.394,0,-139.654	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/1:100:0,100,0:0:0:100,0:3591,0:-323.396,-30.103,0,-323.396,-30.103,-323.396	1/1:68:0,67,0:0:0:67,0:2383,0:-214.456,-20.169,0,-214.456,-20.169,-214.456	1/2:6:0,4,2:0:0:4,2:144,65:-17.3439,-5.57097,-4.36685,-12.1095,0,-11.5074	1/2:82:0,47,35:0:0:47,35:1662,1238:-236.544,-101.18,-87.0318,-135.718,0,-125.182	1/1:39:0,3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chr02	25448514	.	GCA	GCG	50593.2	PASS	AB=0.452621;ABP=136.552;AC=55;AF=0.292553;AN=188;AO=3121;CIGAR=2M1X;DP=12079;DPB=12079;DPRA=1.20857;EPP=6736.82;EPPR=19229.6;GTI=2;LEN=1;MEANALT=1.27941;MQM=59.9837;MQMR=59.9861;NS=94;NUMALT=1;ODDS=1.38767;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111467;QR=314097;RO=8930;RPL=3121;RPP=6780.18;RPPR=19333.5;RPR=0;RUN=1;SAF=5;SAP=6736.82;SAR=3116;SRF=12;SRP=19290.2;SRR=8918;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.869	0/0:171:170,0:170:5993:0:0:0,-51.1751,-539.118	0/1:118:54,63:54:1919:63:2244:-166.762,0,-137.522	0/1:361:149,212:149:5215:212:7572:-572.849,0,-360.823	0/1:98:36,62:36:1285:62:2220:-170.563,0,-86.452	0/1:98:54,44:54:1935:44:1580:-112.991,0,-144.926	0/1:157:87,69:87:3046:69:2472:-175.522,0,-227.158	0/1:217:128,89:128:4414:89:3180:-221.101,0,-332.115	0/1:98:49,49:49:1718:49:1756:-128.823,0,-125.403	0/1:80:38,42:38:1333:42:1504:-111.572,0,-96.1856	0/0:106:105,1:105:3700:1:36:0,-28.3109,-329.605	0/1:107:57,49:57:1992:49:1752:-125.695,0,-147.282	0/1:109:56,53:56:1988:53:1883:-136.936,0,-146.38	0/1:126:63,63:63:2202:63:2249:-164.743,0,-160.512	0/1:92:47,45:47:1672:45:1616:-118.035,0,-123.072	0/1:91:36,55:36:1243:55:1968:-150.001,0,-84.7734	0/0:130:130,0:130:4594:0:0:0,-39.1339,-413.625	0/0:99:97,2:97:3442:2:72:0,-22.9652,-303.157	0/0:58:58,0:58:2047:0:0:0,-17.4597,-184.501	0/1:196:137,59:137:4847:59:2104:-130.628,0,-377.386	0/0:227:226,0:226:7894:0:0:0,-68.0328,-710.136	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.251	0/1:101:69,32:69:2428:32:1152:-73.5861,0,-188.351	0/0:201:201,0:201:6984:0:0:0,-60.507,-628.637	0/0:85:85,0:85:2983:0:0:0,-25.5875,-268.703	0/0:190:188,1:188:6634:1:36:0,-53.6562,-593.546	0/0:266:264,2:264:9280:2:72:0,-73.2373,-828.344	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.838	0/1:292:183,109:183:6377:109:3904:-263.653,0,-486.126	0/1:187:87,99:87:3082:99:3537:-262.187,0,-221.257	0/1:220:142,78:142:5030:78:2767:-183.045,0,-386.625	0/1:13:6,7:6:214:7:252:-19.1156,0,-15.6944	0/0:14:14,0:14:499:0:0:0,-4.21442,-45.2456	0/0:13:13,0:13:462:0:0:0,-3.91339,-41.9162	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5493	0/1:16:11,5:11:394:5:180:-11.7356,0,-30.985	0/1:278:131,147:131:4648:147:5271:-390.838,0,-334.797	0/1:151:86,65:86:2988:65:2324:-163.965,0,-223.695	0/1:89:47,42:47:1635:42:1491:-107.692,0,-120.641	0/1:9:6,3:6:214:3:108:-7.3659,0,-16.8985	0/0:323:322,1:322:11227:1:36:0,-93.6344,-1006.74	0/1:61:26,35:26:909:35:1256:-94.9825,0,-63.7602	0/1:191:142,48:142:4997:48:1703:-95.9998,0,-392.327	0/1:141:72,68:72:2550:68:2444:-177.858,0,-187.394	0/1:98:56,42:56:1962:42:1500:-105.794,0,-147.351	0/0:147:147,0:147:5137:0:0:0,-44.2514,-462.478	0/1:146:90,56:90:3185:56:1984:-134.884,0,-242.924	0/1:231:130,100:130:4584:100:3549:-250.024,0,-343.129	0/1:112:73,39:73:2583:39:1392:-91.8637,0,-199.003	0/0:243:242,1:242:8523:1:36:0,-69.552,-763.321	0/1:168:95,73:95:3379:73:2595:-183.225,0,-253.754	0/1:16:14,2:14:495:2:72:-2.02024,0,-40.0666	0/0:159:159,0:159:5626:0:0:0,-47.8638,-506.466	0/0:71:71,0:71:2456:0:0:0,-21.3731,-221.294	0/1:19:9,10:9:322:10:360:-27.0247,0,-23.6046	0/1:161:99,61:99:3420:61:2148:-145.061,0,-259.491	0/0:67:67,0:67:2350:0:0:0,-20.169,-211.757	0/0:20:19,1:19:665:1:36:0,-2.42232,-56.5753	0/1:13:7,3:7:240:3:108:-6.70504,0,-18.5693	0/1:103:68,35:68:2422:35:1244:-81.2586,0,-187.228	0/0:155:153,2:153:5421:2:72:0,-39.8229,-481.185	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1167	0/0:218:218,0:218:7658:0:0:0,-65.6245,-689.262	0/0:276:273,3:273:9541:3:108:0,-73.0091,-848.593	0/1:112:72,40:72:2545:40:1428:-95.1022,0,-195.584	0/0:99:99,0:99:3479:0:0:0,-29.802,-313.323	0/1:122:76,45:76:2670:45:1603:-107.882,0,-203.866	0/1:115:35,79:35:1243:79:2836:-220.801,0,-77.4961	0/1:56:37,18:37:1292:18:648:-41.7354,0,-99.6623	0/1:115:67,48:67:2352:48:1711:-119.657,0,-177.32	0/1:109:50,59:50:1788:59:2104:-156.817,0,-128.39	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.264	0/0:102:100,2:100:3484:2:72:0,-23.8683,-306.936	0/1:85:42,43:42:1499:43:1548:-114.026,0,-109.616	0/0:315:313,1:313:10979:1:36:0,-91.285,-984.428	0/0:200:198,0:198:7003:0:0:0,-59.6039,-629.98	0/1:123:82,41:82:2888:41:1476:-96.1095,0,-223.131	0/1:154:82,71:82:2896:71:2536:-182.074,0,-214.46	0/1:22:13,9:13:456:9:320:-22.5197,0,-34.7502	0/0:170:169,0:169:5902:0:0:0,-50.8741,-530.937	0/0:52:51,1:51:1798:1:36:0,-12.0553,-158.502	0/1:194:106,88:106:3705:88:3147:-225.056,0,-275.252	0/0:151:151,0:151:5349:0:0:0,-45.4555,-481.545	0/0:111:111,0:111:3929:0:0:0,-33.4143,-353.789	0/0:170:169,0:169:5966:0:0:0,-50.8741,-536.691	0/1:254:135,119:135:4795:119:4234:-304.781,0,-355.247	0/1:58:29,29:29:1010:29:1040:-76.4546,0,-73.75	0/1:114:52,62:52:1778:62:2206:-163.996,0,-125.977	0/1:88:49,37:49:1742:37:1319:-92.718,0,-130.816	0/1:91:46,45:46:1630:45:1611:-117.886,0,-119.594	0/1:153:80,73:80:2794:73:2620:-189.99,0,-205.642	0/1:120:36,81:36:1259:81:2883:-224.152,0,-78.0556	0/0:192:192,0:192:6781:0:0:0,-57.7978,-610.369	0/0:180:177,3:177:6234:3:108:0,-44.1102,-551.091
chr02	25492018	.	A	G	60271.4	PASS	AB=0.512323;ABP=12.055;AC=56;AF=0.297872;AN=188;AO=3535;CIGAR=1X;DP=11758;DPB=11758;DPRA=1.29806;EPP=7635.8;EPPR=17700.9;GTI=1;LEN=1;MEANALT=1.01587;MQM=59.976;MQMR=59.9884;NS=94;NUMALT=1;ODDS=4.73123;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126222;QR=293493;RO=8222;RPL=3531;RPP=7644.46;RPPR=17700.9;RPR=4;RUN=1;SAF=1;SAP=7670.48;SAR=3534;SRF=0;SRP=17856.9;SRR=8222;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.877	0/0:189:188,1:188:6727:1:36:0,-53.2964,-601.906	0/1:149:77,72:77:2756:72:2564:-186.145,0,-203.428	0/1:245:107,138:107:3828:138:4952:-372.076,0,-270.965	0/1:68:36,32:36:1283:32:1148:-82.3812,0,-95.3026	0/1:68:37,31:37:1309:31:1104:-79.2006,0,-97.6395	0/1:138:83,55:83:2948:55:1971:-136.122,0,-224.011	0/1:242:95,147:95:3384:147:5245:-399.338,0,-231.917	0/1:137:73,64:73:2582:64:2304:-166.379,0,-191.386	0/1:172:83,89:83:2976:89:3170:-233.747,0,-216.295	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/1:106:51,55:51:1828:55:1967:-145.395,0,-132.892	0/1:94:51,43:51:1832:43:1518:-108.615,0,-136.864	0/1:193:97,96:97:3476:96:3401:-248.198,0,-254.953	0/1:90:56,34:56:2003:34:1224:-83.3743,0,-153.45	0/1:72:34,38:34:1224:38:1352:-100.306,0,-88.7929	0/0:109:109,0:109:3915:0:0:0,-32.8123,-352.541	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.728	0/0:62:61,1:61:2192:1:36:0,-15.0656,-193.947	0/1:166:84,82:84:2997:82:2927:-213.694,0,-219.99	0/0:182:182,0:182:6505:0:0:0,-54.7875,-585.534	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/1:131:73,58:73:2605:58:2073:-147.404,0,-195.262	0/0:73:72,1:72:2592:1:36:0,-18.3769,-229.925	0/0:67:67,0:67:2372:0:0:0,-20.169,-213.736	0/0:352:351,1:351:12458:1:36:0,-102.364,-1116.98	0/0:163:163,0:163:5793:0:0:0,-49.0679,-521.486	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:318:161,157:161:5769:157:5602:-408.574,0,-423.595	0/1:210:113,97:113:4033:97:3453:-247.766,0,-299.941	0/1:178:86,92:86:3038:92:3273:-241.206,0,-220.066	0/1:9:7,2:7:252:2:68:-3.74844,0,-20.3197	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:13:5,8:5:180:8:288:-22.3401,0,-12.6387	0/1:273:134,139:134:4788:139:4961:-364.456,0,-348.896	0/1:228:105,122:105:3722:122:4355:-323.588,0,-266.643	0/1:127:61,66:61:2171:66:2342:-172.808,0,-157.425	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/0:162:162,0:162:5773:0:0:0,-48.7669,-519.686	0/1:64:34,30:34:1220:30:1067:-77.0753,0,-90.8409	0/1:109:44,65:44:1545:65:2324:-176.608,0,-106.528	0/1:126:63,63:63:2260:63:2252:-165.013,0,-165.733	0/1:67:36,31:36:1288:31:1112:-80.2223,0,-96.0546	0/0:133:133,0:133:4766:0:0:0,-40.037,-429.095	0/1:155:81,74:81:2885:74:2651:-192.176,0,-213.226	0/1:228:121,107:121:4320:107:3824:-275.721,0,-320.343	0/1:122:53,69:53:1896:69:2463:-185.199,0,-134.192	0/0:93:93,0:93:3291:0:0:0,-27.9958,-296.407	0/1:177:82,95:82:2936:95:3393:-252.303,0,-211.192	0/1:25:16,9:16:572:9:318:-21.4346,0,-44.2877	0/0:188:188,0:188:6748:0:0:0,-56.5936,-607.392	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/1:18:12,6:12:424:6:216:-14.372,0,-33.0779	0/1:171:80,91:80:2841:91:3248:-241.066,0,-204.452	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:29:14,15:14:500:15:536:-39.8449,0,-36.6063	0/1:76:41,35:41:1464:35:1240:-89.0262,0,-109.178	0/0:165:165,0:165:5916:0:0:0,-49.6699,-532.548	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:206:206,0:206:7376:0:0:0,-62.0122,-663.887	0/0:234:232,2:232:8274:2:72:0,-63.6043,-737.831	0/1:56:32,24:32:1148:24:844:-59.4194,0,-86.7722	0/0:99:95,4:95:3392:4:144:0,-16.4884,-292.182	0/0:243:237,6:237:8443:6:216:0,-53.3598,-740.088	0/1:152:36,116:36:1269:116:4125:-325.678,0,-68.7542	0/1:55:20,35:20:712:35:1247:-95.9774,0,-47.85	0/1:81:44,37:44:1568:37:1319:-94.6277,0,-116.992	0/1:129:68,61:68:2423:61:2192:-158.713,0,-179.493	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	0/0:141:141,0:141:5013:0:0:0,-42.4452,-451.316	0/1:91:41,50:41:1468:50:1781:-133.177,0,-105.022	0/0:412:411,1:411:14658:1:36:0,-120.426,-1315.37	0/0:170:170,0:170:6032:0:0:0,-51.1751,-542.983	0/1:148:89,59:89:3188:59:2101:-144.806,0,-242.591	0/1:159:59,100:59:2104:100:3567:-273.374,0,-141.766	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	0/0:110:110,0:110:3891:0:0:0,-33.1133,-350.383	0/0:141:141,0:141:5033:0:0:0,-42.4452,-453.116	0/1:270:137,133:137:4886:133:4760:-347.279,0,-358.612	0/0:156:156,0:156:5584:0:0:0,-46.9607,-502.683	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536	0/1:196:102,94:102:3648:94:3363:-243.884,0,-269.153	0/1:54:27,27:27:964:27:972:-71.5423,0,-70.8212	0/1:110:50,60:50:1784:60:2160:-161.553,0,-127.729	0/1:101:41,60:41:1464:60:2156:-163.903,0,-101.652	0/1:107:50,57:50:1784:57:2030:-150.761,0,-128.633	0/1:225:114,111:114:4084:111:3981:-290.747,0,-300.014	0/1:97:30,67:30:1072:67:2394:-186.516,0,-67.5925	0/0:114:114,0:114:4073:0:0:0,-34.3174,-366.755	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326
chr02	25504013	.	G	C	66495.6	PASS	AB=0.616077;ABP=704.742;AC=57;AF=0.303191;AN=188;AO=3712;CIGAR=1X;DP=9174;DPB=9174;DPRA=1.36543;EPP=8063.52;EPPR=11720.6;GTI=10;LEN=1;MEANALT=1.05172;MQM=59.9232;MQMR=47.9886;NS=94;NUMALT=1;ODDS=0.089736;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132818;QR=194757;RO=5456;RPL=3712;RPP=8063.52;RPPR=11720.6;RPR=0;RUN=1;SAF=3712;SAP=8063.52;SAR=0;SRF=5456;SRP=11850.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:45,3:45:1616:3:108:0,-4.37427,-134.911	0/0:78:78,0:78:2804:0:0:0,-23.4803,-250.674	0/1:121:31,90:31:1097:90:3224:-253.956,0,-61.8648	0/1:153:38,115:38:1340:115:4110:-323.655,0,-73.0327	0/1:74:20,54:20:705:54:1940:-152.6,0,-40.2118	0/1:48:9,39:9:309:39:1404:-112.209,0,-12.943	0/1:165:65,100:65:2309:100:3565:-271.387,0,-156.194	0/1:146:41,105:41:1461:105:3772:-295.401,0,-85.7266	0/1:91:38,53:38:1353:53:1896:-143.524,0,-94.076	0/1:72:28,44:28:1008:44:1584:-121.177,0,-68.1847	0/0:139:139,0:139:4963:0:0:0,-41.8432,-440.247	0/1:115:57,58:57:2029:58:2084:-153.212,0,-146.111	0/1:118:71,46:71:2548:46:1637:-112.036,0,-192.498	0/1:150:79,71:79:2802:71:2543:-183.965,0,-204.695	0/1:81:43,38:43:1544:38:1344:-96.8731,0,-113.306	0/1:78:41,37:41:1476:37:1328:-96.3407,0,-108.542	0/0:119:119,0:119:4252:0:0:0,-35.8226,-379.341	0/0:92:92,0:92:3296:0:0:0,-27.6948,-293.935	0/0:89:89,0:89:3196:0:0:0,-26.7917,-285.775	0/1:187:32,155:32:1133:155:5543:-442.702,0,-45.1995	0/0:93:93,0:93:3291:0:0:0,-27.9958,-294.075	0/0:57:57,0:57:2014:0:0:0,-17.1587,-179.77	0/1:110:48,62:48:1709:62:2220:-166.951,0,-117.079	0/0:125:125,0:125:4452:0:0:0,-37.6287,-395.308	0/0:72:72,0:72:2571:0:0:0,-21.6742,-230.213	0/0:212:212,0:212:7616:0:0:0,-63.8184,-677.909	0/0:122:121,0:121:4310:0:0:0,-36.4246,-383.86	0/0:51:51,0:51:1836:0:0:0,-15.3525,-164.201	0/1:291:79,210:79:2814:210:7524:-589.841,0,-162.983	0/1:153:57,96:57:2040:96:3448:-264.474,0,-135.644	0/1:114:41,73:41:1464:73:2603:-200.2,0,-96.2957	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.5506	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4803	0/0:10:10,0:10:352:0:0:0,-3.0103,-31.8762	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.29451	0/1:250:105,145:105:3745:145:5175:-390.627,0,-257.941	0/1:159:35,124:35:1256:124:4424:-350.452,0,-64.1626	0/1:136:69,67:69:2472:67:2408:-176.035,0,-179.626	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.57343	0/0:48:48,0:48:1682:0:0:0,-14.4494,-150.749	0/1:64:30,34:30:1080:34:1216:-90.4806,0,-77.2857	0/1:127:58,69:58:2061:69:2480:-185.221,0,-145.586	0/1:122:65,57:65:2321:57:2033:-146.514,0,-170.329	0/1:116:65,51:65:2328:51:1816:-128.801,0,-172.907	0/0:73:73,0:73:2601:0:0:0,-21.9752,-231.574	0/1:119:39,80:39:1388:80:2855:-220.828,0,-87.736	0/1:141:37,104:37:1324:104:3732:-293.634,0,-75.0483	0/1:119:46,73:46:1629:73:2620:-200.225,0,-109.424	0/0:59:59,0:59:2124:0:0:0,-17.7608,-189.434	0/1:150:53,97:53:1859:97:3456:-266.095,0,-119.608	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:68:67,1:67:2397:1:36:0,-16.8718,-210.714	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.271	0/1:13:3,10:3:108:10:360:-28.8305,0,-6.10716	0/1:119:38,80:38:1345:80:2851:-221.094,0,-84.8713	0/0:80:80,0:80:2864:0:0:0,-24.0824,-254.601	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:16:2,14:2:72:14:504:-40.8816,0,-1.96046	0/1:150:47,103:47:1677:103:3692:-287.327,0,-105.103	0/0:181:181,0:181:6493:0:0:0,-54.4864,-577.838	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.2599	0/0:87:87,0:87:3109:0:0:0,-26.1896,-275.356	0/0:94:93,1:93:3340:1:36:0,-24.6985,-292.569	0/1:61:38,23:38:1360:23:828:-56.4809,0,-103.578	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.0735	0/0:93:88,5:88:3115:5:180:0,-11.4437,-261.789	0/1:163:36,127:36:1281:127:4543:-359.968,0,-65.1869	0/1:71:32,39:32:1133:39:1380:-103.123,0,-79.967	0/1:116:51,65:51:1832:65:2332:-175.22,0,-128.292	0/1:128:61,67:61:2184:67:2378:-175.743,0,-156.212	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.0783	0/0:89:89,0:89:3124:0:0:0,-26.7917,-279.727	0/1:66:24,42:24:864:42:1496:-115.067,0,-57.2319	0/0:201:200,0:200:7096:0:0:0,-60.206,-633.019	0/0:48:48,0:48:1709:0:0:0,-14.4494,-152.758	0/1:119:31,88:31:1116:88:3148:-247.717,0,-64.4181	0/1:85:24,61:24:845:61:2192:-171.958,0,-49.8411	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.31128	0/0:56:56,0:56:1988:0:0:0,-16.8577,-177.7	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.133	0/1:201:63,138:63:2264:138:4942:-384.051,0,-141.477	0/0:153:153,0:153:5488:0:0:0,-46.0576,-487.443	0/0:93:93,0:93:3321:0:0:0,-27.9958,-295.191	0/0:125:125,0:125:4465:0:0:0,-37.6287,-397.047	0/1:207:107,100:107:3839:100:3600:-261.891,0,-279.261	0/1:45:22,23:22:788:23:828:-61.2978,0,-57.3384	0/1:138:72,66:72:2572:66:2360:-171.116,0,-188.538	0/1:107:49,58:49:1756:58:2056:-152.781,0,-124.942	0/1:105:47,58:47:1680:58:2084:-156.22,0,-117.937	0/1:198:93,105:93:3329:105:3748:-277.91,0,-237.167	0/1:104:33,71:33:1176:71:2548:-198.262,0,-73.9655	0/0:66:66,0:66:2357:0:0:0,-19.868,-209.266	0/0:117:117,0:117:4189:0:0:0,-35.2205,-374.119
chr02	25519269	.	A	G	148916	PASS	AB=0.460614;ABP=78.1024;AC=133;AF=0.707447;AN=188;AO=6247;CIGAR=1X;DP=9270;DPB=9270;DPRA=0;EPP=6790.84;EPPR=3263.56;GTI=1;LEN=1;MEANALT=1.09574;MQM=59.9856;MQMR=59.993;NS=94;NUMALT=1;ODDS=1.55369;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222799;QR=107969;RO=3013;RPL=5333;RPP=6790.84;RPPR=3263.56;RPR=914;RUN=1;SAF=6247;SAP=13568.2;SAR=0;SRF=3013;SRP=6545.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	1/1:80:0,79:0:0:79:2812:-252.952,-23.7814,0	0/1:104:53,51:53:1900:51:1771:-128.361,0,-139.971	0/1:109:49,60:49:1756:60:2145:-160.503,0,-125.512	0/1:57:32,25:32:1152:25:892:-63.441,0,-86.8314	0/1:65:34,31:34:1220:31:1108:-80.4607,0,-90.5399	0/1:113:54,59:54:1940:59:2124:-157.412,0,-140.86	0/1:137:81,56:81:2916:56:2000:-139.033,0,-221.433	0/1:84:50,34:50:1788:34:1216:-84.46,0,-135.916	0/1:139:73,66:73:2616:66:2357:-170.544,0,-193.844	1/1:100:0,100:0:0:100:3569:-321.418,-30.103,0	0/1:65:35,30:35:1256:30:1080:-77.9463,0,-93.7783	0/1:85:41,44:41:1476:44:1569:-115.912,0,-107.549	0/1:112:55,55:55:1968:55:1972:-144.282,0,-143.922	0/1:57:30,27:30:1076:27:972:-70.6392,0,-79.9941	0/1:63:37,26:37:1332:26:936:-65.5946,0,-101.217	1/1:73:0,73:0:0:73:2581:-232.536,-21.9752,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:56:1,55:1:36:55:1976:-174.516,-13.2594,0	0/1:106:47,59:47:1688:59:2120:-159.159,0,-120.298	1/1:135:0,134:0:0:134:4758:-428.018,-40.338,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:105:68,37:68:2444:37:1332:-88.5742,0,-188.606	1/1:116:0,116:0:0:116:4128:-371.699,-34.9195,0	1/1:100:1,99:1:36:99:3499:-311.519,-26.5047,0	1/1:294:2,291:2:72:291:10407:-929.714,-81.7249,0	1/1:173:1,171:1:32:171:6107:-546.513,-48.9177,0	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	0/1:204:136,68:136:4845:68:2432:-157.726,0,-374.795	0/1:224:115,109:115:4136:109:3904:-284.123,0,-304.991	0/1:176:105,71:105:3760:71:2526:-174.607,0,-285.618	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	1/1:20:0,20:0:0:20:704:-63.6845,-6.0206,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:199:119,80:119:4276:80:2864:-198.092,0,-325.111	0/1:367:185,182:185:6640:182:6478:-472.628,0,-487.198	0/1:98:57,41:57:2044:41:1472:-103.275,0,-154.731	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:98:0,98:0:0:98:3519:-316.919,-29.5009,0	0/1:49:26,23:26:932:23:828:-60.0936,0,-69.4484	0/1:139:64,75:64:2292:75:2670:-198.701,0,-164.698	0/1:47:23,24:23:820:24:860:-63.5734,0,-59.9741	0/1:60:31,29:31:1116:29:1040:-75.8526,0,-82.6899	1/1:92:0,92:0:0:92:3266:-294.158,-27.6948,0	0/1:174:98,76:98:3516:76:2717:-192.393,0,-264.27	0/1:162:95,67:95:3397:67:2385:-166.139,0,-257.159	0/1:134:73,61:73:2624:61:2169:-155.135,0,-196.069	1/1:138:2,136:2:72:136:4841:-429.006,-34.7054,0	0/1:245:123,122:123:4397:122:4319:-315.133,0,-322.149	0/1:17:3,14:3:108:14:504:-40.5806,0,-4.95766	1/1:142:0,141:0:0:141:5033:-452.756,-42.4452,0	1/1:60:0,60:0:0:60:2126:-191.605,-18.0618,0	0/1:28:15,12:15:536:12:428:-30.3714,0,-40.0873	0/1:96:54,42:54:1936:42:1485:-105.041,0,-145.617	1/1:86:0,86:0:0:86:3067:-276.259,-25.8886,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:21:12,9:12:424:9:320:-22.8207,0,-32.1748	0/1:90:54,36:54:1936:36:1296:-89.8512,0,-147.424	1/1:258:2,256:2:72:256:9144:-816.096,-70.829,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:128:0,128:0:0:128:4576:-412.003,-38.5318,0	1/1:109:0,109:0:0:109:3881:-349.485,-32.8123,0	0/1:95:43,52:43:1548:52:1841:-137.371,0,-111.015	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:137:0,137:0:0:137:4890:-440.25,-41.2411,0	0/1:130:78,52:78:2796:52:1847:-127.37,0,-212.746	0/1:49:24,25:24:864:25:900:-66.5705,0,-63.3321	0/1:94:51,43:51:1817:43:1529:-109.604,0,-135.513	0/1:87:50,37:50:1792:37:1313:-92.2801,0,-135.373	1/1:30:0,30:0:0:30:1066:-96.2514,-9.0309,0	1/1:105:1,103:1:36:103:3655:-325.555,-28.0687,0	0/1:82:55,27:55:1968:27:968:-62.7529,0,-152.707	1/1:184:0,184:0:0:184:6574:-591.739,-55.3895,0	1/1:116:0,116:0:0:116:4137:-372.512,-34.9195,0	0/1:103:44,59:44:1565:59:2102:-158.442,0,-110.134	0/1:70:33,37:33:1188:37:1328:-98.7501,0,-86.1565	0/1:20:12,8:12:402:8:288:-20.2468,0,-30.4786	1/1:102:0,102:0:0:102:3647:-328.433,-30.7051,0	1/1:80:0,80:0:0:80:2807:-252.868,-24.0824,0	0/1:213:119,94:119:4234:94:3353:-237.866,0,-317.119	1/1:112:0,112:0:0:112:3978:-358.209,-33.7154,0	1/1:69:0,69:0:0:69:2453:-221.023,-20.7711,0	1/1:66:0,66:0:0:66:2367:-213.288,-19.868,0	0/1:131:69,62:69:2484:62:2213:-159.998,0,-184.378	0/1:33:17,16:17:600:16:561:-40.8831,0,-44.3952	0/1:78:41,37:41:1476:37:1323:-95.891,0,-109.655	0/1:86:49,37:49:1752:37:1324:-93.5735,0,-132.076	0/1:84:42,42:42:1504:42:1500:-110.008,0,-110.368	0/1:188:87,101:87:3132:101:3573:-265.183,0,-225.511	0/1:55:39,16:39:1404:16:576:-35.6183,0,-110.103	1/1:47:0,46:0:0:46:1648:-148.249,-13.8474,0	1/1:101:0,101:0:0:101:3613:-325.369,-30.404,0
chr02	25569605	.	C	T	144929	PASS	AB=0.503125;ABP=3.47174;AC=133;AF=0.707447;AN=188;AO=6995;CIGAR=1X;DP=9708;DPB=9708;DPRA=0;EPP=15192.5;EPPR=5892.04;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9838;MQMR=59.9926;NS=94;NUMALT=1;ODDS=0.71342;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250335;QR=96947;RO=2712;RPL=0;RPP=15192.5;RPPR=5892.04;RPR=6995;RUN=1;SAF=6995;SAP=15192.5;SAR=0;SRF=2712;SRP=5892.04;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:206:0,206:0:0:206:7400:-666.043,-62.0122,0	0/1:127:50,77:50:1780:77:2764:-210.77,0,-122.252	0/1:209:114,95:114:4084:95:3377:-241.23,0,-304.83	0/1:57:19,38:19:680:38:1352:-104.82,0,-44.3705	0/1:100:37,63:37:1320:63:2260:-173.56,0,-88.9989	0/1:140:81,59:81:2900:59:2098:-146.888,0,-219.092	0/1:164:80,84:80:2852:84:3001:-220.951,0,-207.55	0/1:114:62,52:62:2208:52:1862:-133.542,0,-164.668	0/1:112:47,65:47:1676:65:2333:-176.514,0,-117.412	1/1:86:0,86:0:0:86:3080:-277.428,-25.8886,0	0/1:56:26,30:26:936:30:1072:-79.9348,0,-67.7018	0/1:49:24,25:24:864:25:896:-66.2099,0,-63.3321	0/1:177:87,90:87:3104:90:3223:-237.009,0,-226.306	0/1:53:29,24:29:1036:24:851:-60.9549,0,-77.5993	0/1:63:34,29:34:1220:29:1040:-74.9495,0,-91.1419	1/1:117:0,117:0:0:117:4200:-378.094,-35.2205,0	1/1:57:1,56:1:36:56:1997:-176.404,-13.5604,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:177:85,92:85:3040:92:3296:-243.577,0,-220.548	1/1:264:2,262:2:72:262:9335:-833.278,-72.6352,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:32:17,15:17:608:15:532:-38.5801,0,-45.4191	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	1/1:62:0,62:0:0:62:2232:-201.139,-18.6639,0	1/1:264:0,263:0:0:263:9412:-846.832,-79.1709,0	1/1:243:0,243:0:0:243:8716:-784.429,-73.1503,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:225:119,106:119:4268:106:3812:-275.544,0,-316.566	0/1:210:94,116:94:3360:116:4142:-309.744,0,-239.401	0/1:158:69,89:69:2449:89:3172:-238.143,0,-173.101	0/1:10:2,8:2:72:8:268:-21.4347,0,-3.82642	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:13:0,13:0:0:13:449:-40.7375,-3.91339,0	0/1:18:10,8:10:356:8:284:-20.4848,0,-26.9627	0/1:152:74,78:74:2652:78:2793:-205.853,0,-193.17	0/1:162:73,89:73:2612:89:3192:-238.736,0,-186.561	0/1:98:50,48:50:1780:48:1722:-125.764,0,-130.982	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:147:1,146:1:36:146:5236:-467.778,-40.6531,0	0/1:45:16,29:16:564:29:1044:-80.5381,0,-37.544	0/1:136:56,80:56:2004:80:2838:-214.716,0,-139.693	0/1:74:40,34:40:1424:34:1204:-86.3891,0,-106.181	0/1:39:22,17:22:792:17:603:-42.8593,0,-59.8655	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:103:56,47:56:2000:47:1688:-121.201,0,-149.268	0/1:126:58,68:58:2084:68:2428:-180.845,0,-149.9	0/1:82:48,34:48:1716:34:1216:-85.0621,0,-130.041	1/1:224:0,224:0:0:224:8005:-720.471,-67.4307,0	0/1:117:61,56:61:2192:56:2008:-145.773,0,-162.325	0/1:32:14,18:14:489:18:644:-48.6576,0,-34.7059	1/1:137:0,137:0:0:137:4906:-441.691,-41.2411,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.439	0/1:129:73,56:73:2624:56:1993:-140.809,0,-197.574	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:25:15,10:15:540:10:360:-25.2186,0,-41.4108	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	0/1:190:103,87:103:3660:87:3116:-223.471,0,-272.404	1/1:130:0,130:0:0:130:4664:-419.92,-39.1339,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:163:0,163:0:0:163:5850:-526.598,-49.0679,0	1/1:163:1,162:1:36:162:5806:-519.055,-45.4696,0	0/1:116:53,63:53:1900:63:2268:-169.463,0,-136.358	1/1:67:0,67:0:0:67:2377:-214.187,-20.169,0	1/1:179:1,178:1:36:178:6380:-570.69,-50.2861,0	0/1:138:92,46:92:3296:46:1652:-107.426,0,-255.317	0/1:53:27,26:27:972:26:926:-67.7031,0,-71.8433	0/1:76:37,39:37:1332:39:1400:-103.421,0,-97.3041	0/1:83:35,48:35:1260:48:1728:-130.82,0,-88.72	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:68:0,68:0:0:68:2433:-219.224,-20.47,0	0/1:36:9,27:9:324:27:972:-76.9608,0,-18.6688	1/1:398:1,397:1:36:397:14191:-1273.34,-116.212,0	1/1:133:0,133:0:0:133:4764:-428.917,-40.037,0	0/1:199:107,92:107:3816:92:3300:-237.314,0,-283.734	0/1:140:63,77:63:2240:77:2760:-206.497,0,-159.72	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	1/1:132:0,132:0:0:132:4740:-426.757,-39.736,0	1/1:108:0,108:0:0:108:3842:-345.975,-32.5112,0	0/1:163:83,80:83:2964:80:2849:-207.579,0,-217.926	1/1:98:1,97:1:36:97:3479:-309.722,-25.9027,0	1/1:80:0,80:0:0:80:2849:-256.647,-24.0824,0	1/1:84:0,84:0:0:84:3001:-270.322,-25.2865,0	0/1:131:70,61:70:2492:61:2165:-155.682,0,-185.099	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9624	0/1:64:33,31:33:1184:31:1116:-81.4858,0,-87.5942	0/1:55:25,30:25:887:30:1076:-80.5962,0,-63.5915	0/1:90:48,42:48:1716:42:1503:-108.471,0,-127.633	0/1:157:78,79:78:2791:79:2840:-208.576,0,-204.168	0/1:54:35,19:35:1239:19:680:-45.2735,0,-95.558	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:60:1,59:1:32:59:2100:-186.07,-14.8625,0
chr02	25569655	.	G	T	104403	PASS	AB=0.487144;ABP=16.6331;AC=55;AF=0.292553;AN=188;AO=4635;CIGAR=1X;DP=16440;DPB=16440;DPRA=1.10938;EPP=10059.1;EPPR=25596;GTI=0;LEN=1;MEANALT=1.08065;MQM=59.9922;MQMR=59.9862;NS=94;NUMALT=1;ODDS=18.0823;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164856;QR=419773;RO=11798;RPL=2633;RPP=189.547;RPPR=707.19;RPR=2002;RUN=1;SAF=2632;SAP=188.366;SAR=2003;SRF=6874;SRP=702.877;SRR=4924;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:71:71,0:71:2534:0:0:0,-21.3731,-228.31	0/0:257:257,0:257:9160:0:0:0,-77.3647,-824.373	0/1:264:147,117:147:5236:117:4146:-293.854,0,-391.906	0/1:400:194,206:194:6894:206:7386:-544.374,0,-500.119	0/1:79:46,33:46:1652:33:1172:-82.0061,0,-125.187	0/1:147:84,63:84:2972:63:2248:-158.332,0,-223.461	0/1:252:126,126:126:4428:126:4501:-329.398,0,-322.836	0/1:294:162,132:162:5750:132:4703:-334.929,0,-429.115	0/1:259:141,118:141:5036:118:4182:-298.597,0,-375.421	0/1:177:93,84:93:3310:84:2999:-216.86,0,-244.836	0/0:120:120,0:120:4227:0:0:0,-36.1236,-380.614	0/1:169:92,76:92:3277:76:2693:-191.681,0,-244.216	0/1:152:78,74:78:2788:74:2615:-189.842,0,-205.404	0/1:228:109,119:109:3895:119:4226:-311.887,0,-282.109	0/1:144:76,68:76:2719:68:2417:-174.437,0,-201.605	0/1:117:59,58:59:2073:58:2076:-151.89,0,-151.619	0/0:145:145,0:145:5156:0:0:0,-43.6493,-464.096	0/0:83:83,0:83:2940:0:0:0,-24.9855,-264.834	0/0:94:94,0:94:3309:0:0:0,-28.2968,-298.028	0/1:289:138,151:138:4897:151:5373:-396.705,0,-353.885	0/0:388:388,0:388:13796:0:0:0,-116.8,-1241.42	0/0:176:176,0:176:6241:0:0:0,-52.9813,-561.788	0/1:99:47,52:47:1652:52:1843:-136.348,0,-119.163	0/0:153:153,0:153:5433:0:0:0,-46.0576,-489.1	0/0:149:149,0:149:5314:0:0:0,-44.8535,-478.395	0/0:408:408,0:408:14550:0:0:0,-122.82,-1309.25	0/0:457:457,0:457:16267:0:0:0,-137.571,-1463.71	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/1:401:203,198:203:7251:198:7085:-516.994,0,-531.926	0/1:256:147,109:147:5244:109:3874:-271.792,0,-395.033	0/1:229:128,101:128:4540:101:3567:-252.301,0,-339.83	0/1:16:10,6:10:360:6:201:-13.6006,0,-27.9278	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:35:17,18:17:612:18:644:-47.7545,0,-44.8774	0/1:328:172,156:172:6108:156:5527:-398.821,0,-451.087	0/1:231:127,103:127:4544:103:3671:-260.997,0,-339.53	0/1:143:68,75:68:2427:75:2643:-195.068,0,-175.638	0/1:14:8,6:8:284:6:212:-15.2104,0,-21.6889	0/0:259:259,0:259:9170:0:0:0,-77.9668,-825.275	0/1:70:36,34:36:1284:34:1206:-87.7724,0,-94.7913	0/1:327:180,147:180:6405:147:5201:-369.794,0,-478.102	0/1:106:51,55:51:1806:55:1954:-144.225,0,-130.911	0/1:100:47,53:47:1688:53:1883:-139.645,0,-122.104	0/0:165:165,0:165:5867:0:0:0,-49.6699,-528.14	0/1:190:99,90:99:3543:90:3207:-231.599,0,-261.824	0/1:285:136,149:136:4867:149:5314:-392.602,0,-352.388	0/1:158:81,77:81:2874:77:2746:-199.82,0,-211.246	0/0:279:279,0:279:9950:0:0:0,-83.9874,-895.438	0/1:269:138,131:138:4930:131:4657:-338.314,0,-362.873	0/1:37:22,15:22:773:15:540:-37.7984,0,-58.7514	0/0:183:182,0:182:6496:0:0:0,-54.7875,-584.447	0/0:107:107,0:107:3826:0:0:0,-32.2102,-344.536	0/1:27:7,20:7:248:20:716:-56.6399,0,-14.5364	0/1:218:100,116:100:3551:116:4134:-306.861,0,-254.418	0/0:83:83,0:83:2923:0:0:0,-24.9855,-263.302	0/1:27:10,17:10:360:17:612:-47.2856,0,-24.6165	0/1:30:15,15:15:536:15:516:-37.7325,0,-39.5439	0/1:262:120,142:120:4291:142:5039:-374.787,0,-307.497	0/0:212:212,0:212:7591:0:0:0,-63.8184,-683.228	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:291:290,1:290:10272:1:36:0,-84.0015,-920.802	0/0:228:226,1:226:8031:1:36:0,-65.0204,-719.289	0/1:178:115,63:115:4097:63:2260:-150.079,0,-315.332	0/0:141:138,3:138:4913:3:108:0,-32.3701,-432.245	0/0:264:264,0:264:9407:0:0:0,-79.4719,-846.403	0/1:212:85,127:85:3040:127:4522:-343.331,0,-210.012	0/1:76:35,41:35:1243:41:1468:-109.538,0,-89.2956	0/1:122:58,64:58:2060:64:2281:-168.825,0,-148.943	0/1:130:77,53:77:2730:53:1899:-132.054,0,-206.809	0/0:50:50,0:50:1762:0:0:0,-15.0515,-158.862	0/0:206:205,1:205:7279:1:34:0,-58.6133,-650.152	0/1:112:70,42:70:2492:42:1500:-101.579,0,-190.816	0/0:507:504,3:504:17952:3:99:0,-143.386,-1606.06	0/0:262:262,0:262:9339:0:0:0,-78.8699,-840.478	0/1:254:111,143:111:3943:143:5077:-380.614,0,-278.6	0/1:190:101,89:101:3616:89:3161:-227.521,0,-268.45	0/1:36:20,16:20:707:16:567:-40.5243,0,-53.1175	0/0:195:193,2:193:6869:2:72:0,-51.8641,-611.443	0/0:193:193,0:193:6874:0:0:0,-58.0988,-618.729	0/1:342:168,174:168:5976:174:6181:-453.435,0,-434.997	0/0:143:143,0:143:5075:0:0:0,-43.0473,-456.896	0/0:145:145,0:145:5164:0:0:0,-43.6493,-464.901	0/0:119:119,0:119:4243:0:0:0,-35.8226,-382.05	0/1:241:127,114:127:4463:114:4031:-290.432,0,-329.292	0/1:54:27,27:27:953:27:951:-69.6487,0,-69.8277	0/1:125:64,61:64:2253:61:2162:-157.208,0,-165.403	0/1:127:74,53:74:2629:53:1908:-133.767,0,-198.626	0/1:127:60,67:60:2131:67:2395:-177.576,0,-153.827	0/1:217:111,106:111:3941:106:3756:-272.916,0,-289.56	0/1:118:45,73:45:1612:73:2591:-197.918,0,-109.849	0/0:112:112,0:112:4007:0:0:0,-33.7154,-360.819	0/0:162:161,1:161:5721:1:32:0,-45.5675,-511.811
chr02	25569657	.	G	C	308742	PASS	AB=0.508483;ABP=8.97889;AC=133;AF=0.707447;AN=188;AO=11795;CIGAR=1X;DP=16507;DPB=16507;DPRA=0;EPP=25589.5;EPPR=10200.2;GTI=0;LEN=1;MEANALT=1.12766;MQM=59.9782;MQMR=59.997;NS=94;NUMALT=1;ODDS=17.5997;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=417482;QR=166253;RO=4700;RPL=6965;RPP=842.185;RPPR=132.79;RPR=4830;RUN=1;SAF=6962;SAP=837.474;SAR=4833;SRF=2614;SRP=131.813;SRR=2086;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:70:0,70:0:0:70:2437:-219.582,-21.0721,0	1/1:257:0,257:0:0:257:9140:-822.577,-77.3647,0	0/1:272:120,151:120:4271:151:5334:-398.337,0,-302.71	0/1:404:209,194:209:7379:194:6854:-495.259,0,-542.488	0/1:78:31,47:31:1091:47:1680:-128.007,0,-75.0184	0/1:145:61,84:61:2176:84:2984:-225.145,0,-152.457	0/1:253:130,123:130:4635:123:4364:-316.746,0,-341.154	0/1:286:126,160:126:4502:160:5612:-419.112,0,-319.253	0/1:254:116,138:116:4074:138:4881:-362.984,0,-290.389	0/1:177:85,92:85:3020:92:3265:-240.788,0,-218.747	1/1:119:0,119:0:0:119:4248:-382.5,-35.8226,0	0/1:168:77,91:77:2715:91:3223:-239.721,0,-194.02	0/1:155:76,79:76:2686:79:2812:-206.661,0,-195.323	0/1:233:121,112:121:4289:112:3943:-284.923,0,-316.05	0/1:148:71,77:71:2532:77:2748:-203.01,0,-183.579	0/1:119:61,58:61:2122:58:2053:-149.218,0,-155.421	1/1:145:0,145:0:0:145:5133:-462.028,-43.6494,0	1/1:83:0,83:0:0:83:2942:-265.015,-24.9855,0	1/1:93:0,93:0:0:93:3261:-293.711,-27.9958,0	0/1:299:156,143:156:5506:143:5089:-368.148,0,-405.659	1/1:384:1,383:1:36:383:13607:-1220.83,-111.997,0	1/1:176:0,176:0:0:176:6258:-563.316,-52.9813,0	0/1:101:54,47:54:1906:47:1655:-118.83,0,-141.412	1/1:153:0,153:0:0:153:5382:-484.516,-46.0576,0	1/1:150:1,149:1:36:149:5300:-473.537,-41.5562,0	1/1:414:0,413:0:0:413:14589:-1312.41,-124.325,0	1/1:460:0,459:0:0:459:16314:-1467.58,-138.173,0	1/1:60:0,60:0:0:60:2136:-192.506,-18.0618,0	0/1:400:199,201:199:7101:201:7122:-520.629,0,-518.738	0/1:262:110,151:110:3874:151:5371:-404.673,0,-270.005	0/1:231:104,127:104:3696:127:4479:-333.743,0,-263.304	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	1/1:17:0,17:0:0:17:599:-54.2381,-5.11751,0	1/1:23:0,23:0:0:23:810:-73.219,-6.92369,0	0/1:37:20,16:20:698:16:572:-40.6167,0,-51.9451	0/1:328:157,171:157:5535:171:6029:-443.984,0,-399.542	0/1:233:107,126:107:3775:126:4385:-324.685,0,-269.811	0/1:141:72,69:72:2538:69:2464:-179.569,0,-186.224	0/1:14:6,8:6:203:8:280:-21.3249,0,-14.3868	1/1:261:0,260:0:0:260:9188:-826.538,-78.2678,0	0/1:67:31,36:31:1107:36:1260:-93.3404,0,-79.7711	0/1:333:155,177:155:5461:177:6262:-463.455,0,-391.397	0/1:108:58,50:58:2053:50:1780:-127.972,0,-152.529	0/1:103:54,49:54:1912:49:1694:-121.733,0,-141.349	1/1:165:0,164:0:0:164:5797:-521.486,-49.3689,0	0/1:190:91,99:91:3215:99:3526:-260.354,0,-232.377	0/1:289:150,139:150:5311:139:4837:-348.49,0,-391.128	0/1:155:77,78:77:2729:78:2741:-200.186,0,-199.193	1/1:281:0,281:0:0:281:9950:-895.449,-84.5894,0	0/1:268:131,137:131:4661:137:4899:-360.386,0,-338.977	0/1:39:16,23:16:568:23:810:-61.4801,0,-39.7117	1/1:185:0,184:0:0:184:6481:-583.022,-55.3895,0	1/1:108:0,108:0:0:108:3828:-344.718,-32.5112,0	0/1:29:21,8:21:740:8:273:-16.1703,0,-58.1935	0/1:216:118,98:118:4157:98:3452:-245.872,0,-309.293	1/1:82:0,82:0:0:82:2891:-260.426,-24.6845,0	0/1:28:18,10:18:629:10:345:-22.952,0,-48.5049	0/1:30:15,15:15:527:15:536:-39.5439,0,-38.7293	0/1:264:143,121:143:5079:121:4303:-307.977,0,-377.782	1/1:212:1,211:1:36:211:7470:-668.745,-60.2201,0	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:294:1,293:1:36:293:10347:-927.537,-84.9045,0	1/1:231:1,230:1:36:230:8114:-726.684,-65.9397,0	0/1:174:63,111:63:2225:111:3923:-300.883,0,-148.134	1/1:140:2,138:2:72:138:4890:-433.416,-35.3075,0	1/1:263:0,263:0:0:263:9328:-839.469,-79.1709,0	0/1:214:130,84:130:4574:84:2952:-201.492,0,-347.407	0/1:77:41,36:41:1456:36:1260:-90.5203,0,-108.157	0/1:121:63,58:63:2229:58:2054:-148.706,0,-164.448	0/1:127:54,73:54:1908:73:2577:-193.948,0,-133.764	1/1:51:0,51:0:0:51:1823:-164.35,-15.3525,0	1/1:205:0,205:0:0:205:7293:-655.807,-61.7112,0	0/1:117:47,70:47:1636:70:2476:-187.872,0,-112.302	1/1:514:3,511:3:108:511:18157:-1623.6,-144.654,0	1/1:261:0,260:0:0:260:9240:-831.216,-78.2678,0	0/1:250:142,108:142:5031:108:3832:-269.82,0,-377.684	0/1:201:95,106:95:3279:106:3758:-277.915,0,-234.822	0/1:36:16,20:16:568:20:716:-53.9306,0,-40.6148	1/1:193:1,192:1:36:192:6733:-602.454,-54.5005,0	1/1:192:0,192:0:0:192:6849:-616.479,-57.7978,0	0/1:342:178,164:178:6284:164:5820:-420.959,0,-462.707	1/1:142:1,141:1:36:141:4986:-445.296,-39.148,0	1/1:143:0,143:0:0:143:5106:-459.684,-43.0473,0	1/1:117:0,117:0:0:117:4142:-372.967,-35.2205,0	0/1:244:115,129:115:4082:129:4524:-333.88,0,-294.117	0/1:55:28,27:28:989:27:944:-68.7147,0,-72.7654	0/1:124:61,63:61:2154:63:2208:-161.656,0,-156.796	0/1:127:54,73:54:1919:73:2603:-196.287,0,-134.756	0/1:126:66,60:66:2330:60:2111:-152.327,0,-172.03	0/1:218:106,112:106:3768:112:3941:-289.258,0,-273.697	0/1:122:75,46:75:2668:46:1644:-111.552,0,-203.668	1/1:107:0,107:0:0:107:3789:-341.21,-32.2102,0	1/1:163:1,162:1:32:162:5710:-510.822,-45.8686,0
chr02	25571727	.	CGG	TGG	105686	PASS	AB=0.518528;ABP=14.4366;AC=133;AF=0.722826;AN=184;AO=5082;CIGAR=1X2M;DP=6948;DPB=6948;DPRA=0;EPP=11038.4;EPPR=3989.83;GTI=2;LEN=1;MEANALT=1.28261;MQM=59.8815;MQMR=59.9679;NS=92;NUMALT=1;ODDS=2.79336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182044;QR=64758;RO=1836;RPL=0;RPP=11038.4;RPPR=3989.83;RPR=5082;RUN=1;SAF=5082;SAP=11038.4;SAR=0;SRF=1836;SRP=3989.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:159:0,159:0:0:159:5708:-513.832,-47.8638,0	0/1:104:59,44:59:2059:44:1580:-111.07,0,-154.215	0/1:98:48,47:48:1693:47:1684:-122.91,0,-123.722	0/1:45:19,26:19:675:26:936:-71.0131,0,-47.5306	0/1:41:21,20:21:704:20:720:-52.7865,0,-51.329	0/1:88:37,50:37:1310:50:1778:-133.482,0,-91.6373	0/1:146:68,77:68:2382:77:2764:-204.992,0,-170.627	0/1:82:34,47:34:1186:47:1672:-125.752,0,-82.2998	0/1:79:38,41:38:1355:41:1468:-108.635,0,-98.4665	1/1:58:0,58:0:0:58:2080:-187.462,-17.4597,0	0/1:61:38,23:38:1325:23:824:-56.1123,0,-101.183	0/1:64:36,28:36:1257:28:1008:-71.7704,0,-94.1637	0/1:103:47,56:47:1668:56:2012:-150.347,0,-119.401	0/1:67:30,37:30:1051:37:1324:-99.2188,0,-74.7311	0/1:51:21,30:21:735:30:1072:-81.4399,0,-51.1185	1/1:103:0,103:0:0:103:3673:-330.473,-31.0061,0	1/1:64:1,63:1:31:63:2249:-199.572,-16.1665,0	1/1:28:1,27:1:36:27:968:-83.8391,-4.83057,0	0/1:133:70,63:70:2502:63:2256:-163.266,0,-185.396	1/1:138:1,136:1:36:136:4868:-434.673,-38.0027,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:61:31,30:31:1096:30:1068:-78.0692,0,-80.5857	1/1:87:0,87:0:0:87:3124:-281.381,-26.1896,0	1/1:63:0,61:0:0:61:2184:-196.466,-18.3628,0	1/1:192:0,192:0:0:192:6868:-618.167,-57.7978,0	1/1:190:0,189:0:0:189:6800:-611.782,-56.8947,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:163:72,90:72:2531:90:3232:-241.966,0,-178.914	0/1:71:19,51:19:652:51:1828:-143.369,0,-37.5675	0/1:87:44,42:44:1580:42:1496:-108.685,0,-116.243	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:251:-22.9379,-2.10721,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	.:.:.:.:.:.:.:.	0/1:145:79,66:79:2810:66:2368:-169.728,0,-209.491	0/1:97:45,52:45:1586:52:1848:-137.343,0,-113.829	0/1:43:24,19:24:850:19:684:-48.946,0,-63.8752	.:.:.:.:.:.:.:.	1/1:108:0,106:0:0:106:3808:-342.596,-31.9092,0	0/1:18:7,11:7:250:11:396:-30.5642,0,-17.4281	0/1:108:39,68:39:1383:68:2439:-187.195,0,-92.1529	0/1:91:51,40:51:1760:40:1440:-102.504,0,-131.283	0/1:64:33,31:33:1180:31:1108:-80.7627,0,-87.2424	1/1:62:0,61:0:0:61:2180:-196.124,-18.3628,0	0/1:70:36,34:36:1263:34:1212:-88.1556,0,-92.8979	0/1:95:33,62:33:1167:62:2224:-171.826,0,-76.7376	0/1:66:30,35:30:1047:35:1256:-93.4185,0,-74.6106	1/1:117:0,115:0:0:115:4124:-370.981,-34.6185,0	0/1:83:33,50:33:1176:50:1776:-135.092,0,-81.1619	0/1:6:1,5:1:20:5:180:-14.7459,0,-0.193777	1/1:114:1,113:1:28:113:4048:-361.411,-31.5177,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:76:36,40:36:1272:40:1424:-105.576,0,-91.9033	1/1:24:0,21:0:0:21:752:-67.6385,-6.32163,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:72:38,34:38:1336:34:1220:-88.4326,0,-98.8651	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	1/1:6:0,5:0:0:5:180:-16.2588,-1.50515,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	1/1:125:0,125:0:0:125:4472:-402.65,-37.6288,0	0/1:68:29,39:29:1028:39:1392:-105.104,0,-72.3625	1/1:56:0,56:0:0:56:1997:-180.002,-16.8577,0	1/1:71:1,70:1:36:70:2504:-222.014,-17.7749,0	0/1:49:34,15:34:1206:15:540:-34.1861,0,-94.0957	0/1:29:15,14:15:527:14:500:-36.6063,0,-39.0304	0/1:46:19,26:19:676:26:936:-70.6451,0,-47.2615	0/1:110:61,47:61:2177:47:1680:-118.616,0,-163.324	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:43:0,43:0:0:43:1537:-138.352,-12.9443,0	0/1:71:33,38:33:1124:38:1364:-101.679,0,-80.0853	1/1:148:0,148:0:0:148:5297:-476.855,-44.5524,0	1/1:157:1,156:1:34:156:5608:-501.44,-43.8628,0	0/1:108:57,51:57:2024:51:1824:-131.885,0,-149.921	0/1:139:68,71:68:2401:71:2529:-186.017,0,-174.504	0/1:17:9,8:9:322:8:284:-20.7858,0,-24.2067	1/1:106:0,106:0:0:106:3800:-342.197,-31.9092,0	1/1:93:0,93:0:0:93:3328:-299.738,-27.9958,0	0/1:139:62,76:62:2181:76:2712:-202.422,0,-154.651	1/1:84:0,84:0:0:84:3016:-271.443,-25.2865,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:112:0,112:0:0:112:4012:-361.268,-33.7154,0	0/1:144:67,77:67:2381:77:2764:-205.653,0,-171.171	0/1:42:16,26:16:570:26:928:-71.195,0,-38.9897	0/1:60:23,36:23:802:36:1274:-96.5705,0,-54.3761	0/1:64:33,31:33:1184:31:1112:-81.1254,0,-87.6026	0/1:43:22,21:22:783:21:752:-55.062,0,-57.8495	0/1:43:20,23:20:707:23:828:-61.8998,0,-51.0104	0/1:55:34,21:34:1210:21:756:-51.8106,0,-92.6488	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:110:2,108:2:69:108:3860:-340.502,-26.5608,0
chr02	25583568	.	CCC	TCT,CCT	146199	PASS	AB=0.467519,0.529972;ABP=39.5452,34.1206;AC=133,53;AF=0.715054,0.284946;AN=186;AO=4795,2122;CIGAR=1X1M1X,2M1X;DP=6928;DPB=6928;DPRA=0,1.11325;EPP=10415.2,4610.87;EPPR=9.52472;GTI=0;LEN=3,1;MEANALT=1.73118,2.09836;MQM=58.6851,59.9043;MQMR=60;NS=93;NUMALT=2;ODDS=1.59421;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=170304,76009;QR=105;RO=3;RPL=4795,2122;RPP=10415.2,4610.87;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10415.2,4610.87;SAR=4795,2122;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43,0:0:0:43,0:1513,0:-136.282,-12.9443,0,-136.282,-12.9443,-136.282	1/1:50:0,48,2:0:0:48,2:1685,72:-151.459,-14.4494,0,-145.584,-8.21478,-144.981	1/2:85:0,42,43:0:0:42,43:1497,1529:-246.923,-124.956,-112.313,-122.323,0,-109.379	1/2:134:0,69,65:0:0:69,65:2441,2311:-387.469,-188.682,-167.911,-199.141,0,-179.575	1/2:26:0,14,12:0:0:14,12:502,432:-76.5516,-35.6088,-31.3944,-41.3019,0,-37.6895	1/2:36:0,19,17:0:0:19,17:680,608:-104.565,-49.9327,-44.2131,-54.9873,0,-49.8698	1/2:73:0,44,29:0:0:44,29:1558,1040:-211.992,-85.1845,-71.9392,-127.164,0,-118.434	1/2:82:0,38,44:0:0:38,44:1336,1568:-236.774,-128.152,-116.713,-108.975,0,-95.73	1/2:76:0,29,47:0:0:29,47:1021,1687:-220.957,-137.894,-129.164,-83.4173,0,-69.2689	1/2:75:0,33,42:0:0:33,42:1171,1512:-219.12,-123.731,-113.797,-95.7452,0,-83.102	1/1:61:0,61,0:0:0:61,0:2186,0:-196.986,-18.3628,0,-196.986,-18.3628,-196.986	1/2:111:1,57,53:1:36:57,53:2022,1896:-316.002,-151.664,-137.443,-161.698,0,-148.681	1/2:87:0,33,54:0:0:33,54:1167,1940:-253.538,-158.62,-148.686,-95.274,0,-79.0184	1/2:57:0,27,30:0:0:27,30:970,1080:-167.603,-88.4746,-80.3468,-79.4881,0,-70.4572	1/2:68:0,31,37:0:0:31,37:1114,1328:-199.495,-108.684,-99.3522,-91.1699,0,-80.0318	1/2:60:1,27,32:1:36:27,32:954,1152:-168.373,-91.0599,-85.8695,-74.6733,0,-67.978	1/1:27:0,27,0:0:0:27,0:970,0:-87.5627,-8.12781,0,-87.5627,-8.12781,-87.5627	1/1:30:0,30,0:0:0:30,0:1064,0:-96.0324,-9.0309,0,-96.0324,-9.0309,-96.0324	1/1:28:0,28,0:0:0:28,0:970,0:-87.5566,-8.42884,0,-87.5566,-8.42884,-87.5566	1/2:177:0,76,101:0:0:76,101:2694,3576:-511.052,-291.639,-268.761,-219.767,0,-189.363	1/1:72:0,72,0:0:0:72,0:2543,0:-229.02,-21.6742,0,-229.02,-21.6742,-229.02	1/1:82:0,82,0:0:0:82,0:2914,0:-262.454,-24.6845,0,-262.454,-24.6845,-262.454	1/2:97:0,42,55:0:0:42,55:1495,1942:-280.332,-158.496,-145.853,-122.191,0,-105.634	1/1:46:0,46,0:0:0:46,0:1619,0:-145.976,-13.8474,0,-145.976,-13.8474,-145.976	1/1:54:0,54,0:0:0:54,0:1933,0:-174.163,-16.2556,0,-174.163,-16.2556,-174.163	1/1:163:0,162,1:0:0:162,1:5771,36:-519.087,-48.7669,0,-516.15,-45.4696,-515.849	1/1:165:0,165,0:0:0:165,0:5869,0:-527.375,-49.67,0,-527.375,-49.67,-527.375	1/1:33:0,33,0:0:0:33,0:1186,0:-106.925,-9.93399,0,-106.925,-9.93399,-106.925	1/2:219:0,113,106:0:0:113,106:4024,3793:-637.58,-309.657,-275.641,-328.279,0,-296.37	1/2:100:0,39,61:0:0:39,61:1384,2188:-291.569,-178.811,-167.071,-113.114,0,-94.7514	1/2:94:0,43,50:0:0:43,50:1507,1784:-268.025,-145.431,-132.487,-122.587,0,-107.536	.:.:.:.:.:.:.:.	1/1:20:0,20,0:0:0:20,0:711,0:-64.3153,-6.0206,0,-64.3153,-6.0206,-64.3153	1/1:6:0,6,0:0:0:6,0:216,0:-19.785,-1.80618,0,-19.785,-1.80618,-19.785	1/1:14:0,14,0:0:0:14,0:500,0:-45.3146,-4.21442,0,-45.3146,-4.21442,-45.3146	1/2:21:0,11,10:0:0:11,10:392,360:-61.6746,-29.7331,-26.4218,-32.2996,0,-29.2893	1/2:219:1,115,102:1:33:115,102:4084,3668:-629.01,-296.604,-264.653,-330.051,0,-302.014	1/2:80:0,46,34:0:0:46,34:1647,1220:-234.153,-99.8709,-86.0235,-134.64,0,-124.405	1/2:57:0,28,27:0:0:28,27:999,972:-160.639,-79.3027,-70.8738,-81.335,0,-73.2072	1/1:8:0,8,0:0:0:8,0:286,0:-26.0837,-2.40824,0,-26.0837,-2.40824,-26.0837	1/1:127:0,127,0:0:0:127,0:4528,0:-407.591,-38.2308,0,-407.591,-38.2308,-407.591	1/2:37:0,9,28:0:0:9,28:324,1004:-108.681,-82.2469,-79.5376,-26.7932,0,-18.3644	1/2:60:0,26,34:0:0:26,34:927,1224:-175.704,-100.232,-92.4052,-75.8297,0,-65.5946	1/2:56:0,28,28:0:0:28,28:1006,1008:-164.668,-82.6075,-74.1787,-82.4203,0,-73.9915	1/2:72:0,35,37:0:0:35,37:1247,1324:-209.889,-108.323,-97.787,-101.923,0,-90.7849	1/1:103:0,103,0:0:0:103,0:3656,0:-329.109,-31.0061,0,-329.109,-31.0061,-329.109	1/2:76:0,34,42:0:0:34,42:1170,1508:-218.271,-123.295,-113.06,-95.3262,0,-82.683	1/2:132:0,60,72:0:0:60,72:2145,2588:-385.007,-210.936,-192.874,-174.429,0,-152.754	1/2:70:0,32,38:0:0:32,38:1142,1353:-203.636,-110.628,-100.995,-93.3642,0,-81.9251	1/1:80:0,80,0:0:0:80,0:2857,0:-257.312,-24.0824,0,-257.312,-24.0824,-257.312	1/2:97:0,46,50:0:0:46,50:1641,1788:-279.443,-145.776,-131.928,-133.666,0,-118.615	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/1:221:0,221,0:0:0:221,0:7847,0:-705.297,-66.5276,0,-705.297,-66.5276,-705.297	1/1:27:0,26,1:0:0:26,1:929,36:-83.5577,-7.82678,0,-80.6202,-4.52954,-80.3192	1/2:13:0,7,6:0:0:7,6:245,216:-37.9054,-17.9834,-15.8762,-20.2772,0,-18.471	1/2:104:0,52,52:0:0:52,52:1832,1872:-302.195,-153.106,-137.452,-149.445,0,-133.791	1/1:35:0,35,0:0:0:35,0:1240,0:-111.82,-10.5361,0,-111.82,-10.5361,-111.82	1/2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chr02	25609471	.	G	A	39576.3	PASS	AB=0.598257;ABP=320.493;AC=55;AF=0.292553;AN=188;AO=2277;CIGAR=1X;DP=5858;DPB=5858;DPRA=1.63525;EPP=4947.45;EPPR=7763.86;GTI=4;LEN=1;MEANALT=1.03175;MQM=59.9877;MQMR=59.9916;NS=94;NUMALT=1;ODDS=0.790539;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80998;QR=127427;RO=3578;RPL=2277;RPP=4947.45;RPPR=7763.86;RPR=0;RUN=1;SAF=2277;SAP=4947.45;SAR=0;SRF=3578;SRP=7772.54;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/1:76:43,33:43:1523:33:1160:-81.8265,0,-114.484	0/1:298:140,158:140:4994:158:5602:-414.598,0,-359.902	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:61:30,31:30:1061:31:1103:-81.217,0,-77.4365	0/1:66:23,43:23:815:43:1544:-119.385,0,-53.8028	0/1:73:30,43:30:1076:43:1536:-116.558,0,-75.1777	0/1:60:37,23:37:1328:23:820:-56.0607,0,-101.76	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/1:98:32,66:32:1140:66:2320:-179.561,0,-73.4083	0/1:86:34,52:34:1203:52:1844:-140.352,0,-82.6865	0/1:95:41,54:41:1464:54:1920:-144.479,0,-103.458	0/1:57:17,40:17:612:40:1420:-110.939,0,-38.2547	0/1:62:14,48:14:504:48:1698:-134.441,0,-27.0342	0/0:44:44,0:44:1544:0:0:0,-13.2453,-139.091	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:104:51,53:51:1828:53:1880:-138.169,0,-133.494	0/0:98:97,1:97:3459:1:36:0,-25.9027,-307.925	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:70:8,62:8:288:62:2211:-178.181,0,-5.19531	0/0:82:81,0:81:2895:0:0:0,-24.3834,-260.426	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:139:139,0:139:4968:0:0:0,-41.8432,-447.267	0/0:105:104,1:104:3728:1:36:0,-28.0099,-332.122	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:99:39,59:39:1400:59:2108:-160.129,0,-96.4384	0/1:71:20,51:20:720:51:1824:-143.068,0,-43.7556	0/1:65:33,32:33:1184:32:1135:-82.8918,0,-87.3014	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:216:99,117:99:3494:117:4146:-308.303,0,-249.649	0/1:96:46,50:46:1644:50:1779:-131.493,0,-119.35	0/1:59:28,31:28:987:31:1100:-81.5495,0,-71.3823	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.319	0/1:32:18,14:18:644:14:504:-36.0651,0,-48.6576	0/1:77:30,47:30:1076:47:1680:-128.308,0,-73.9735	0/1:41:16,25:16:563:25:896:-68.6181,0,-38.6569	0/1:54:22,32:22:780:32:1132:-85.933,0,-54.2674	0/0:77:76,1:76:2715:1:36:0,-19.581,-240.995	0/1:49:31,18:31:1104:18:644:-43.5401,0,-84.9202	0/1:126:46,80:46:1643:80:2860:-219.708,0,-110.228	0/1:99:44,55:44:1572:55:1976:-148.313,0,-111.97	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:120:52,68:52:1864:68:2424:-182.293,0,-131.916	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.203	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:56:22,34:22:792:34:1198:-91.2663,0,-54.748	0/0:77:74,3:74:2633:3:108:0,-13.1041,-227.141	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:21:7,14:7:252:14:500:-39.0145,0,-16.7073	0/1:61:27,34:27:951:34:1209:-90.7518,0,-67.5415	0/0:126:124,1:124:4384:1:36:0,-34.3903,-391.138	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/0:112:109,3:109:3884:3:108:0,-23.6402,-339.678	0/1:36:17,19:17:597:19:680:-50.6921,0,-43.219	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:56:55,1:55:1972:1:36:0,-13.2594,-174.157	0/1:75:20,55:20:720:55:1946:-152.835,0,-42.5515	0/1:40:7,33:7:252:33:1169:-93.4741,0,-10.9878	0/1:33:29,4:29:1022:4:144:-3.37963,0,-82.3569	0/1:56:24,32:24:841:32:1131:-85.2401,0,-59.1487	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:51:12,39:12:423:39:1392:-110.189,0,-23.0525	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:63:31,32:31:1080:32:1152:-85.0253,0,-78.5409	0/1:33:11,22:11:387:22:792:-61.6717,0,-25.2319	0/1:39:4,35:4:144:35:1256:-101.605,0,-1.57345	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/1:122:45,77:45:1608:77:2751:-211.106,0,-108.284	0/0:95:95,0:95:3320:0:0:0,-28.5978,-299.02	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.942	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:146:58,88:58:2060:88:3168:-241.393,0,-141.721	0/1:27:9,18:9:324:18:644:-50.1628,0,-21.378	0/1:80:30,50:30:1071:50:1771:-135.59,0,-72.6192	0/1:74:25,49:25:891:49:1740:-134.608,0,-58.2326	0/1:43:12,31:12:423:31:1076:-84.2011,0,-25.4608	0/1:163:45,118:45:1586:118:4156:-325.158,0,-93.961	0/1:66:16,50:16:544:50:1769:-139.623,0,-29.4118	0/0:24:24,0:24:830:0:0:0,-7.22472,-75.0124	0/0:66:65,1:65:2312:1:36:0,-16.2697,-204.743
chr02	25625143	.	A	C	195288	PASS	AB=0.470747;ABP=58.0201;AC=129;AF=0.693548;AN=186;AO=9477;CIGAR=1X;DP=13416;DPB=13416;DPRA=58.9495;EPP=20547.3;EPPR=8541.24;GTI=1;LEN=1;MEANALT=1.03297;MQM=59.9822;MQMR=59.97;NS=93;NUMALT=1;ODDS=5.10832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=337808;QR=139573;RO=3936;RPL=9474;RPP=20556;RPPR=8541.24;RPR=3;RUN=1;SAF=9476;SAP=20573.4;SAR=1;SRF=3936;SRP=8549.93;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:951:-85.9043,-8.12781,0	1/1:130:0,130:0:0:130:4632:-417.041,-39.1339,0	0/1:261:123,138:123:4344:138:4939:-366.091,0,-312.134	0/1:537:243,294:243:8575:294:10528:-785.775,0,-610.107	0/1:61:20,41:20:703:41:1445:-111.981,0,-45.2307	0/1:53:18,35:18:636:35:1244:-96.3078,0,-41.6134	0/1:129:88,41:88:3098:41:1455:-92.4124,0,-240.215	0/1:163:91,72:91:3243:72:2592:-184.46,0,-243.024	0/1:141:82,59:82:2907:59:2092:-146.101,0,-219.419	0/1:169:107,62:107:3793:62:2218:-149.01,0,-290.696	1/1:70:0,70:0:0:70:2461:-221.741,-21.0721,0	0/1:132:62,70:62:2193:70:2452:-181.186,0,-157.898	0/1:98:52,46:52:1852:46:1631:-117.577,0,-137.459	0/1:68:40,28:40:1428:28:996:-69.4848,0,-108.347	0/1:81:38,43:38:1368:43:1544:-114.87,0,-99.0374	0/1:77:38,39:38:1340:39:1384:-101.679,0,-97.718	1/1:51:0,51:0:0:51:1823:-164.35,-15.3525,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:30:0,30:0:0:30:1048:-94.6273,-9.0309,0	0/1:433:221,212:221:7842:212:7525:-546.949,0,-575.468	1/1:340:0,340:0:0:340:12110:-1089.73,-102.35,0	1/1:144:0,144:0:0:144:5139:-462.653,-43.3483,0	0/1:253:141,112:141:5023:112:3996:-283.669,0,-375.282	1/1:95:0,95:0:0:95:3372:-303.696,-28.5979,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	1/1:390:1,389:1:36:389:13843:-1242.05,-113.803,0	1/1:165:0,165:0:0:165:5884:-529.67,-49.67,0	1/1:39:0,39:0:0:39:1371:-123.687,-11.7402,0	0/1:545:291,253:291:10328:253:9029:-648.468,0,-765.337	0/1:267:127,140:127:4521:140:5016:-371.211,0,-326.684	0/1:170:90,80:90:3194:80:2847:-205.293,0,-236.507	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:211:104,107:104:3692:107:3802:-278.859,0,-268.968	0/1:109:59,50:59:2096:50:1777:-127.399,0,-156.098	0/1:49:26,23:26:893:23:819:-59.2811,0,-65.9303	.:.:.:.:.:.:.:.	1/1:600:1,599:1:36:599:21274:-1910.53,-177.02,0	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/1:168:95,73:95:3345:73:2601:-183.764,0,-250.697	0/1:36:19,17:19:665:17:575:-41.2301,0,-49.3357	0/1:72:35,37:35:1256:37:1332:-98.5082,0,-91.6711	1/1:194:0,194:0:0:194:6900:-621.068,-58.3998,0	0/1:168:81,87:81:2872:87:3095:-228.204,0,-208.146	0/1:281:118,163:118:4212:163:5814:-438.785,0,-294.662	0/1:110:71,39:71:2544:39:1400:-93.1859,0,-196.097	1/1:241:1,240:1:36:240:8548:-765.721,-68.95,0	0/1:146:109,37:109:3857:37:1328:-75.8719,0,-303.378	0/1:13:8,5:8:280:5:180:-12.6387,0,-21.6259	1/1:204:3,201:3:108:201:7164:-634.74,-51.335,0	1/1:134:0,134:0:0:134:4807:-432.784,-40.338,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:335:194,141:194:6817:141:5021:-351.192,0,-512.769	1/1:51:0,51:0:0:51:1806:-162.82,-15.3525,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:25:10,15:10:348:15:532:-40.6873,0,-24.1294	0/1:101:62,39:62:2192:39:1386:-94.6334,0,-166.205	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:393:0,393:0:0:393:13985:-1258.42,-118.305,0	1/1:297:0,297:0:0:297:10656:-958.946,-89.4059,0	0/1:83:40,43:40:1420:43:1532:-113.187,0,-103.112	1/1:163:0,163:0:0:163:5790:-521.216,-49.0679,0	1/1:280:4,276:4:144:276:9878:-875.63,-70.9748,0	0/1:282:188,94:188:6681:94:3350:-216.826,0,-516.479	0/1:57:39,18:39:1396:18:635:-40.3183,0,-108.78	0/1:101:62,39:62:2208:39:1396:-95.5351,0,-168.581	0/1:43:27,16:27:964:16:572:-38.8691,0,-74.1325	1/1:32:1,31:1:36:31:1112:-96.7931,-6.03469,0	1/1:75:0,75:0:0:75:2677:-241.166,-22.5773,0	0/1:92:60,32:60:2135:32:1152:-76.2954,0,-164.723	1/1:212:0,211:0:0:211:7517:-676.213,-63.5173,0	1/1:387:0,387:0:0:387:13809:-1242.59,-116.499,0	0/1:116:44,72:44:1537:72:2575:-197.079,0,-103.7	0/1:218:102,116:102:3592:116:4127:-305.989,0,-257.865	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.4848	1/1:215:0,215:0:0:215:7640:-687.638,-64.7215,0	1/1:211:0,211:0:0:211:7539:-678.545,-63.5173,0	0/1:364:202,162:202:7197:162:5765:-409.347,0,-538.211	1/1:50:0,50:0:0:50:1756:-158.321,-15.0515,0	1/1:103:2,101:2:72:101:3636:-320.606,-24.1694,0	1/1:62:0,62:0:0:62:2212:-199.345,-18.6639,0	0/1:142:59,83:59:2100:83:2961:-223.976,0,-146.524	0/1:34:16,18:16:567:18:648:-48.4169,0,-41.1257	0/1:85:53,32:53:1868:32:1152:-78.4026,0,-142.812	0/1:73:42,31:42:1484:31:1112:-78.4162,0,-111.879	0/1:28:8,19:8:288:19:675:-52.5896,0,-17.7798	0/1:83:35,48:35:1239:48:1720:-130.1,0,-86.8282	0/1:72:49,23:49:1760:23:824:-52.8092,0,-137.01	1/1:263:0,263:0:0:263:9371:-843.356,-79.1709,0	1/1:137:3,134:3:104:134:4790:-421.553,-31.5383,0
chr02	25625156	.	G	A	155335	PASS	AB=0.531984;ABP=115.384;AC=55;AF=0.295699;AN=186;AO=6764;CIGAR=1X;DP=22227;DPB=22227;DPRA=1.49251;EPP=14690.8;EPPR=33558.8;GTI=0;LEN=1;MEANALT=1.04412;MQM=59.8782;MQMR=59.9629;NS=93;NUMALT=1;ODDS=3.60113;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240381;QR=545013;RO=15457;RPL=3918;RPP=371.937;RPPR=1422.75;RPR=2846;RUN=1;SAF=3918;SAP=371.937;SAR=2846;SRF=9317;SRP=1420.97;SRR=6140;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2282:0:0:0,-19.5669,-205.64	0/0:169:168,1:168:5962:1:36:0,-47.2758,-533.091	0/1:365:178,187:178:6280:187:6648:-488.519,0,-455.422	0/1:767:380,387:380:13451:387:13803:-1011.1,0,-979.505	0/1:75:45,30:45:1600:30:1076:-74.5756,0,-121.713	0/1:77:45,32:45:1570:32:1144:-80.0902,0,-118.407	0/1:204:70,134:70:2464:134:4743:-365.616,0,-160.603	0/1:325:160,165:160:5612:165:5839:-427.755,0,-406.518	0/1:247:124,123:124:4338:123:4359:-318.023,0,-316.245	0/1:282:116,166:116:4083:166:5947:-450.447,0,-282.766	0/0:135:135,0:135:4752:0:0:0,-40.639,-427.842	0/1:251:132,119:132:4568:119:4245:-306.67,0,-335.734	0/1:194:97,97:97:3389:97:3454:-252.669,0,-246.825	0/1:168:75,93:75:2641:93:3309:-247.438,0,-186.936	0/1:173:80,93:80:2804:93:3293:-244.511,0,-200.52	0/1:134:75,59:75:2593:59:2085:-147.581,0,-193.278	0/0:94:94,0:94:3271:0:0:0,-28.2968,-294.615	0/0:88:88,0:88:3071:0:0:0,-26.4906,-276.618	0/0:64:64,0:64:2246:0:0:0,-19.2659,-202.403	0/1:650:298,351:298:10534:351:12471:-926.497,0,-752.258	0/0:503:502,0:502:17689:0:0:0,-151.117,-1591.44	0/0:185:185,0:185:6544:0:0:0,-55.6905,-589.045	0/1:400:170,230:170:5973:230:8125:-610.789,0,-417.254	0/0:159:159,0:159:5639:0:0:0,-47.8638,-507.406	0/0:248:247,1:247:8676:1:36:0,-71.0572,-777.145	0/0:639:632,7:632:22410:7:252:0,-169.329,-1993.25	0/0:582:580,1:580:20471:1:32:0,-172.039,-1838.68	0/0:83:83,0:83:2895:0:0:0,-24.9855,-260.785	0/1:1003:478,525:478:16926:525:18769:-1386.63,0,-1221.06	0/1:392:196,196:196:6968:196:6979:-508.986,0,-509.185	0/1:279:140,139:140:4948:139:4949:-361.428,0,-360.775	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:25:25,0:25:864:0:0:0,-7.52575,-78.0723	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:9,1:9:315:1:36:-0.587975,0,-25.6769	0/1:17:6,11:6:216:11:392:-30.5025,0,-14.673	0/1:439:244,195:244:8604:195:6892:-488.205,0,-642.215	0/1:250:137,113:137:4780:113:4012:-286.012,0,-355.103	0/1:106:47,59:47:1649:59:2054:-153.144,0,-116.787	.:.:.:.:.:.:.:.	0/0:703:701,2:701:24763:2:72:0,-204.787,-2221.18	0/1:50:29,21:29:1014:21:752:-52.9544,0,-76.5185	0/1:226:100,126:100:3529:126:4478:-335.152,0,-249.786	0/1:88:35,53:35:1216:53:1855:-140.416,0,-83.2498	0/1:155:80,75:80:2835:75:2679:-194.695,0,-208.73	0/0:316:316,0:316:11160:0:0:0,-95.1255,-1004.3	0/1:255:121,134:121:4298:134:4790:-354.495,0,-310.237	0/1:480:249,230:249:8846:230:8169:-590.677,0,-651.578	0/1:211:98,113:98:3472:113:4035:-299.821,0,-249.116	0/0:374:372,2:372:13148:2:72:0,-105.748,-1176.3	0/1:297:130,167:130:4585:167:5974:-448.359,0,-323.412	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	0/0:279:277,2:277:9773:2:72:0,-77.1506,-872.692	0/0:177:177,0:177:6290:0:0:0,-53.2823,-566.195	0/1:11:4,7:4:144:7:240:-18.6201,0,-10.0023	0/1:540:211,329:211:7443:329:11635:-883.954,0,-507.347	0/0:73:73,0:73:2592:0:0:0,-21.9752,-233.527	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	0/1:36:16,20:16:572:20:712:-53.5696,0,-40.9763	0/1:180:81,99:81:2810:99:3507:-261.549,0,-198.953	0/0:179:177,2:177:6205:2:72:0,-47.0476,-551.72	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:584:583,1:583:20617:1:36:0,-172.203,-1851.41	0/0:422:420,0:420:14870:0:0:0,-126.433,-1337.66	0/1:168:77,91:77:2748:91:3210:-238.548,0,-196.987	0/0:242:242,0:242:8550:0:0:0,-72.8493,-769.492	0/0:383:375,8:375:13245:8:288:0,-89.0271,-1165.59	0/1:444:154,290:154:5501:290:10322:-795.239,0,-361.559	0/1:106:33,73:33:1139:73:2572:-199.8,0,-70.9025	0/1:145:64,81:64:2291:81:2890:-216.686,0,-162.801	0/1:80:33,47:33:1138:47:1668:-126.325,0,-78.6387	0/0:52:52,0:52:1832:0:0:0,-15.6536,-165.158	0/0:207:207,0:207:7269:0:0:0,-62.3132,-653.213	0/1:204:83,121:83:2903:121:4310:-326.639,0,-200.094	0/0:324:324,0:324:11339:0:0:0,-97.5337,-1020.41	0/0:525:522,3:522:18406:3:108:0,-147.966,-1646.07	0/1:203:102,101:102:3582:101:3596:-262.738,0,-261.478	0/1:370:170,200:170:5989:200:7122:-529.389,0,-427.737	0/1:23:12,11:12:432:11:383:-27.8796,0,-32.2971	0/0:290:287,3:287:10137:3:104:0,-77.5959,-902.551	0/0:353:353,0:353:12420:0:0:0,-106.264,-1117.65	0/1:468:191,277:191:6787:277:9827:-743.196,0,-469.797	0/0:105:105,0:105:3677:0:0:0,-31.6081,-331.136	0/0:191:191,0:191:6645:0:0:0,-57.4967,-598.14	0/0:122:122,0:122:4268:0:0:0,-36.7257,-384.306	0/1:277:140,137:140:4895:137:4827:-351.2,0,-357.094	0/1:58:29,29:29:995:29:1027:-75.2824,0,-72.3962	0/1:167:75,92:75:2598:92:3261:-243.439,0,-183.795	0/1:145:72,73:72:2536:73:2616:-192.038,0,-184.841	0/1:84:53,31:53:1848:31:1101:-74.0246,0,-141.301	0/1:173:102,71:102:3573:71:2510:-174.075,0,-269.702	0/1:159:56,103:56:1975:103:3649:-280.481,0,-130.161	0/0:390:390,0:390:13755:0:0:0,-117.402,-1237.73	0/0:232:229,3:229:8096:3:108:0,-59.7638,-718.589
chr02	25632056	.	CGAC	TGAG,CGAG	459387	PASS	AB=0.490813,0.503789;ABP=10.0725,4.21156;AC=133,55;AF=0.707447,0.292553;AN=188;AO=12381,4865;CIGAR=1X2M1X,3M1X;DP=17325;DPB=17326.5;DPRA=0,1.00513;EPP=26888,10567.2;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=2.40426,2.79688;MQM=59.9683,59.8923;MQMR=60;NS=94;NUMALT=2;ODDS=9.17839;PAIRED=0,0;PAIREDR=0;PAO=3.5,2.5;PQA=118,82;PQR=0;PRO=0;QA=430606,171680;QR=25;RO=1;RPL=5610,2248;RPP=239.419,63.7852;RPPR=5.18177;RPR=6771,2617;RUN=1,1;SAF=5610,2248;SAP=239.419,63.7852;SAR=6771,2617;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:58:0,58,0:0:0:58,0:1992,0:-179.551,-17.4597,0,-179.551,-17.4597,-179.551	1/1:190:0,190,0:0:0:190,0:6599,0:-594.006,-57.1957,0,-594.006,-57.1957,-594.006	1/2:240:0,127,113:0:0:127,113:4394,4017:-684.764,-327.703,-289.472,-357.412,0,-323.395	1/2:428:0,243,182:0:0:243,182:8463,6407:-1209.46,-521.264,-448.114,-688.242,0,-633.454	1/2:60:0,45,15:0:0:45,15:1564,536:-171.204,-44.057,-30.5107,-127.502,0,-122.987	1/2:61:0,28,33:0:0:28,33:990,1176:-176.837,-96.2056,-87.7768,-80.9856,0,-71.0516	1/2:168:0,89,78:0:0:89,78:3142,2714:-476.603,-220.779,-193.988,-255.932,0,-232.452	1/2:260:0,96,162:0:0:96,162:3372,5719:-740.214,-465.763,-436.864,-274.55,0,-225.783	1/2:158:0,65,93:0:0:65,93:2259,3294:-452.335,-268.678,-249.111,-184.007,0,-156.011	1/2:188:0,87,99:0:0:87,99:3043,3543:-536.51,-288.951,-262.761,-247.587,0,-217.785	1/1:187:0,186,1:0:0:186,1:6443,36:-579.393,-55.9916,0,-576.456,-52.6943,-576.155	1/2:193:0,87,106:0:0:87,106:2979,3702:-543.267,-301.456,-275.266,-242.157,0,-210.247	1/2:196:0,107,88:0:0:107,88:3745,3103:-557.327,-252.634,-220.424,-304.685,0,-278.194	1/2:158:1,79,78:1:25:79,78:2712,2738:-440.872,-220.978,-199.144,-218.343,0,-196.811	1/2:158:0,64,94:0:0:64,94:2272,3329:-456.637,-271.514,-252.248,-185.478,0,-157.181	1/2:117:0,57,59:0:0:57,59:1992,2104:-333.519,-171.477,-154.318,-162.036,0,-144.275	1/1:118:0,118,0:0:0:118,0:4114,0:-370.451,-35.5215,0,-370.451,-35.5215,-370.451	1/1:124:0,124,0:0:0:124,0:4341,0:-390.871,-37.3277,0,-390.871,-37.3277,-390.871	1/1:94:0,93,0:0:0:93,0:3248,0:-292.222,-27.9958,0,-292.222,-27.9958,-292.222	1/2:237:0,138,96:0:0:138,96:4815,3367:-665.69,-274.063,-232.521,-391.697,0,-362.798	1/1:330:0,328,0:0:0:328,0:11258,0:-1012.88,-98.7378,0,-1012.88,-98.7378,-1012.88	1/1:112:0,110,0:0:0:110,0:3818,0:-343.454,-33.1133,0,-343.454,-33.1133,-343.454	1/2:140:0,63,76:0:0:63,76:2172,2666:-393.499,-217.065,-198.1,-176.558,0,-153.68	1/1:156:0,156,0:0:0:156,0:5485,0:-493.785,-46.9607,0,-493.785,-46.9607,-493.785	1/1:113:0,112,1:0:0:112,1:3910,21:-351.891,-33.7154,0,-350.303,-31.9164,-350.002	1/1:501:0,498,2:0:0:498,2:17287,72:-1555.15,-149.913,0,-1549.27,-144.078,-1548.67	1/1:477:0,472,3:0:0:472,3:16404,108:-1475.78,-142.086,0,-1466.96,-133.211,-1466.06	1/1:65:0,64,1:0:0:64,1:2241,36:-201.594,-19.2659,0,-198.656,-15.9687,-198.355	1/2:408:0,215,193:0:0:215,193:7467,6811:-1162,-554.969,-490.247,-607.377,0,-549.278	1/2:220:0,112,108:0:0:112,108:3883,3862:-630.733,-315.128,-281.412,-315.957,0,-283.446	1/2:211:0,104,104:0:0:104,104:3630,3670:-594.115,-298.865,-267.558,-295.274,0,-263.967	1/2:18:0,2,16:0:0:2,16:69,555:-51.065,-45.4596,-44.8575,-5.95048,0,-1.134	1/1:33:0,33,0:0:0:33,0:1137,0:-102.634,-9.93399,0,-102.634,-9.93399,-102.634	1/1:6:0,6,0:0:0:6,0:215,0:-19.6992,-1.80618,0,-19.6992,-1.80618,-19.6992	1/1:24:0,24,0:0:0:24,0:824,0:-74.4732,-7.22472,0,-74.4732,-7.22472,-74.4732	1/2:47:0,26,21:0:0:26,21:891,730:-132.028,-59.6978,-51.871,-72.6755,0,-66.3539	1/2:437:0,217,215:0:0:217,215:7598,7627:-1239.64,-621.437,-556.113,-618.244,0,-553.523	1/2:238:0,118,120:0:0:118,120:4152,4219:-681.744,-343.749,-308.227,-338.347,0,-302.223	1/2:134:0,66,68:0:0:66,68:2298,2398:-382.469,-195.607,-175.739,-187.213,0,-166.743	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	1/1:306:0,304,0:0:0:304,0:10526,0:-947.025,-91.5131,0,-947.025,-91.5131,-947.025	1/2:70:0,31,39:0:0:31,39:1090,1338:-197.702,-108.973,-99.6412,-89.0768,0,-77.3367	1/2:223:0,100,121:0:0:100,121:3444,4215:-622.458,-342.728,-312.625,-279.717,0,-243.292	1/2:171:0,81,90:0:0:81,90:2868,3194:-494.209,-260.587,-236.203,-233.977,0,-206.884	1/2:133:0,66,64:0:0:66,64:2190,2244:-359.776,-182.623,-162.755,-177.161,0,-157.895	1/1:176:0,176,0:0:0:176,0:6093,0:-548.479,-52.9813,0,-548.479,-52.9813,-548.479	1/2:237:0,131,105:0:0:131,105:4531,3694:-668.804,-300.619,-261.184,-368.303,0,-336.694	1/2:299:0,159,138:0:0:159,138:5529,4892:-848.051,-398.516,-350.652,-449.6,0,-408.058	1/2:170:0,74,94:0:0:74,94:2581,3314:-479.825,-269.91,-247.634,-209.997,0,-181.701	1/1:248:0,248,0:0:0:248,0:8645,0:-778.063,-74.6554,0,-778.063,-74.6554,-778.063	1/2:157:0,82,75:0:0:82,75:2833,2634:-444.909,-214.731,-190.046,-230.527,0,-207.949	1/2:31:0,16,15:0:0:16,15:563,518:-88.2642,-42.4301,-37.6136,-46.1825,0,-41.667	1/1:248:0,248,0:0:0:248,0:8686,0:-781.698,-74.6554,0,-781.698,-74.6554,-781.698	1/1:160:0,160,0:0:0:160,0:5510,0:-495.957,-48.1648,0,-495.957,-48.1648,-495.957	1/2:17:0,3,14:0:0:3,14: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chr02	25648216	.	A	C	52969.8	PASS	AB=0.524941;ABP=34.8551;AC=56;AF=0.301075;AN=186;AO=3099;CIGAR=1X;DP=10064;DPB=10064;DPRA=1.03094;EPP=6732.4;EPPR=15116.5;GTI=0;LEN=1;MEANALT=1.04918;MQM=59.96;MQMR=59.9136;NS=93;NUMALT=1;ODDS=2.46211;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110124;QR=244667;RO=6960;RPL=6;RPP=6680.39;RPPR=15003.8;RPR=3093;RUN=1;SAF=6;SAP=6680.39;SAR=3093;SRF=13;SRP=15003.8;SRR=6947;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1506:0:0:0,-13.5463,-135.803	0/0:125:125,0:125:4395:0:0:0,-37.6287,-395.726	0/1:150:89,60:89:3132:60:2128:-146.573,0,-236.894	0/1:319:151,168:151:5330:168:5944:-439.043,0,-383.81	0/1:83:37,46:37:1306:46:1644:-123.263,0,-91.4899	0/1:57:28,29:28:985:29:1044:-77.1161,0,-71.8028	0/1:249:120,129:120:4204:129:4615:-340.557,0,-303.589	0/1:122:58,64:58:2060:64:2276:-168.376,0,-148.946	0/1:123:69,54:69:2396:54:1918:-135.869,0,-178.798	0/1:104:55,49:55:1926:49:1718:-123.594,0,-142.306	0/0:62:62,0:62:2163:0:0:0,-18.6639,-194.935	0/1:68:36,32:36:1263:32:1129:-81.4463,0,-93.5017	0/1:84:55,29:55:1931:29:1025:-67.2758,0,-148.777	0/1:79:38,41:38:1286:41:1456:-107.555,0,-92.2501	0/1:70:33,37:33:1138:37:1316:-97.6697,0,-81.649	0/1:66:26,40:26:928:40:1419:-108.139,0,-63.9703	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.551	0/0:85:85,0:85:2997:0:0:0,-25.5875,-269.963	0/0:47:47,0:47:1655:0:0:0,-14.1484,-149.237	0/1:308:136,171:136:4808:171:6091:-455.508,0,-340.242	0/0:154:154,0:154:5350:0:0:0,-46.3586,-481.417	0/0:138:138,0:138:4852:0:0:0,-41.5421,-436.839	0/1:119:49,70:49:1728:70:2491:-188.62,0,-119.98	0/0:144:143,1:143:5000:1:36:0,-39.75,-446.555	0/0:107:106,0:106:3727:0:0:0,-31.9092,-334.047	0/0:279:279,0:279:9873:0:0:0,-83.9874,-887.319	0/0:111:111,0:111:3939:0:0:0,-33.4143,-354.214	0/0:47:47,0:47:1637:0:0:0,-14.1484,-147.616	0/1:316:143,173:143:5019:173:6150:-458.109,0,-356.737	0/1:130:52,78:52:1834:78:2770:-210.406,0,-126.205	0/1:169:82,86:82:2919:86:3052:-223.71,0,-212.131	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.484	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/1:8:6,2:6:216:2:57:-3.00507,0,-17.3823	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:201:90,111:90:3184:111:3955:-295.634,0,-226.277	0/1:167:78,89:78:2731:89:3150:-233.454,0,-195.761	0/1:72:37,35:37:1294:35:1254:-91.4911,0,-95.0854	.:.:.:.:.:.:.:.	0/0:183:182,0:182:6402:0:0:0,-54.7875,-576.066	0/1:55:35,20:35:1248:20:705:-47.2161,0,-96.0682	0/1:136:66,70:66:2309:70:2493:-183.683,0,-167.128	0/1:91:36,55:36:1284:55:1946:-148.021,0,-87.8418	0/1:73:38,35:38:1296:35:1247:-90.5597,0,-94.9581	0/0:137:137,0:137:4845:0:0:0,-41.2411,-436.206	0/1:154:75,79:75:2659:79:2812:-206.962,0,-193.198	0/1:129:67,62:67:2362:62:2211:-160.421,0,-173.635	0/1:153:76,77:76:2699:77:2734:-200.243,0,-197.097	0/0:109:109,0:109:3900:0:0:0,-32.8123,-351.193	0/1:221:108,113:108:3826:113:4044:-297.62,0,-278.012	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:163:163,0:163:5736:0:0:0,-49.0679,-516.097	0/0:68:68,0:68:2394:0:0:0,-20.47,-215.227	0/1:7:1,6:1:36:6:204:-16.5848,0,-1.49106	0/1:117:50,67:50:1736:67:2379:-179.147,0,-121.11	0/0:72:72,0:72:2531:0:0:0,-21.6742,-228.04	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:78:41,37:41:1439:37:1320:-95.6216,0,-106.325	0/0:144:144,0:144:5067:0:0:0,-43.3483,-456.182	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:167:166,1:166:5897:1:36:0,-46.6737,-527.245	0/0:193:192,1:192:6761:1:27:0,-55.399,-605.465	0/1:67:35,32:35:1235:32:1138:-82.5583,0,-91.2844	0/0:87:87,0:87:3038:0:0:0,-26.1896,-273.022	0/0:174:173,1:173:6102:1:36:0,-48.7809,-545.688	0/1:72:24,48:24:856:48:1717:-133.141,0,-55.6869	0/1:29:18,11:18:640:11:395:-27.1623,0,-49.1994	0/1:62:25,37:25:876:37:1306:-99.1761,0,-60.4932	0/1:87:36,51:36:1263:51:1824:-138.251,0,-87.7821	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:154:154,0:154:5462:0:0:0,-46.3586,-491.71	0/1:72:33,39:33:1160:39:1369:-101.832,0,-83.0325	0/0:201:201,0:201:7052:0:0:0,-60.507,-634.753	0/0:189:189,0:189:6643:0:0:0,-56.8947,-597.333	0/1:56:15,41:15:527:41:1447:-113.667,0,-30.9025	0/1:95:51,44:51:1761:44:1576:-113.534,0,-130.173	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:98:97,1:97:3429:1:36:0,-25.9027,-304.736	0/0:140:140,0:140:4931:0:0:0,-42.1442,-443.946	0/1:262:115,147:115:4023:147:5237:-392.598,0,-283.395	0/0:109:109,0:109:3833:0:0:0,-32.8123,-345.171	0/0:90:90,0:90:3129:0:0:0,-27.0927,-281.839	0/1:123:65,58:65:2254:58:2049:-147.653,0,-166.098	0/1:168:77,91:77:2691:91:3233:-240.619,0,-191.235	0/1:49:23,26:23:813:26:910:-67.4636,0,-58.7386	0/1:97:47,50:47:1651:50:1775:-130.832,0,-119.677	0/1:78:40,38:40:1378:38:1360:-99.2203,0,-100.832	0/1:60:26,34:26:879:34:1190:-89.3417,0,-61.3556	0/1:101:47,54:47:1646:54:1924:-143.033,0,-118.022	0/1:96:34,62:34:1207:62:2194:-168.826,0,-80.0364	0/0:118:118,0:118:4088:0:0:0,-35.5215,-368.115	0/0:110:110,0:110:3841:0:0:0,-33.1133,-345.888
chr02	25648240	.	G	A	145147	PASS	AB=0.470273;ABP=48.8418;AC=130;AF=0.698925;AN=186;AO=6992;CIGAR=1X;DP=10167;DPB=10167;DPRA=0;EPP=14917.9;EPPR=6821.57;GTI=0;LEN=1;MEANALT=1.06452;MQM=59.9707;MQMR=60;NS=93;NUMALT=1;ODDS=2.02438;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250433;QR=113540;RO=3168;RPL=6961;RPP=14917.9;RPPR=6821.57;RPR=31;RUN=1;SAF=0;SAP=15185.9;SAR=6992;SRF=0;SRP=6882.23;SRR=3168;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1634:-147.328,-13.8474,0	1/1:127:0,127:0:0:127:4545:-409.215,-38.2308,0	0/1:155:65,90:65:2331:90:3228:-244.082,0,-163.389	0/1:326:176,150:176:6294:150:5366:-384.933,0,-468.417	0/1:86:49,36:49:1745:36:1292:-89.3981,0,-131.512	0/1:55:28,27:28:1004:27:968:-70.8807,0,-74.1192	0/1:253:131,122:131:4692:122:4369:-317.221,0,-346.28	0/1:125:66,59:66:2355:59:2112:-152.72,0,-174.58	0/1:128:56,72:56:2008:72:2569:-192.857,0,-142.461	0/1:108:53,55:53:1900:55:1961:-144.252,0,-138.767	1/1:65:0,65:0:0:65:2313:-208.429,-19.567,0	0/1:70:33,37:33:1184:37:1309:-97.0378,0,-85.7962	0/1:84:29,55:29:1044:55:1975:-152.738,0,-68.9883	0/1:80:42,38:42:1504:38:1360:-98.6182,0,-111.572	0/1:71:38,33:38:1364:33:1188:-85.8555,0,-101.688	0/1:66:40,26:40:1436:26:936:-64.6915,0,-109.67	1/1:50:0,50:0:0:50:1790:-161.382,-15.0515,0	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:308:171,137:171:6127:137:4924:-350.581,0,-458.811	1/1:162:0,162:0:0:162:5820:-523.91,-48.7669,0	1/1:139:0,139:0:0:139:4969:-447.357,-41.8432,0	0/1:119:69,50:69:2455:50:1792:-125.74,0,-185.382	1/1:148:1,147:1:36:147:5263:-470.208,-40.9542,0	1/1:102:0,102:0:0:102:3636:-327.444,-30.7051,0	1/1:280:0,280:0:0:280:10006:-900.247,-84.2884,0	1/1:113:0,113:0:0:113:4025:-362.439,-34.0164,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:314:170,143:170:6091:143:5121:-366.448,0,-453.708	0/1:133:79,54:79:2840:54:1932:-134.119,0,-215.801	0/1:169:87,82:87:3107:82:2933:-213.329,0,-228.983	0/1:2:1,1:1:36:1:28:-2.19767,0,-2.99621	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:208:116,92:116:4155:92:3290:-233.705,0,-311.518	0/1:169:91,78:91:3272:78:2778:-199.385,0,-243.825	0/1:74:36,38:36:1296:38:1368:-101.145,0,-94.6677	.:.:.:.:.:.:.:.	1/1:184:0,184:0:0:184:6600:-594.077,-55.3895,0	0/1:52:20,32:20:716:32:1152:-88.3366,0,-49.1142	0/1:139:74,65:74:2652:65:2310:-166.315,0,-197.083	0/1:91:56,35:56:2004:35:1260:-86.3118,0,-153.24	0/1:72:35,37:35:1248:37:1324:-97.7874,0,-90.9507	1/1:138:2,136:2:72:136:4888:-433.233,-34.7054,0	0/1:157:81,76:81:2908:76:2728:-198.501,0,-214.693	0/1:126:64,62:64:2287:62:2216:-161.775,0,-168.161	0/1:155:77,78:77:2764:78:2808:-206.299,0,-202.341	1/1:109:0,109:0:0:109:3905:-351.639,-32.8123,0	0/1:224:117,107:117:4199:107:3844:-278.724,0,-310.659	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:164:0,163:0:0:163:5868:-527.998,-49.0679,0	1/1:69:0,69:0:0:69:2465:-222.102,-20.7711,0	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:124:71,53:71:2548:53:1896:-133.502,0,-192.243	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:81:39,42:39:1404:42:1497:-110.639,0,-102.276	1/1:146:0,146:0:0:146:5232:-471.017,-43.9504,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:166:1,165:1:36:165:5910:-528.407,-46.3727,0	1/1:193:1,192:1:36:192:6891:-616.621,-54.5005,0	0/1:68:32,36:32:1148:36:1292:-96.1137,0,-83.1598	1/1:87:0,87:0:0:87:3119:-280.936,-26.1896,0	1/1:174:1,172:1:36:172:6103:-545.772,-48.8397,0	0/1:73:50,23:50:1788:23:828:-52.8689,0,-139.227	0/1:29:11,18:11:396:18:648:-49.922,0,-27.2529	0/1:63:37,26:37:1324:26:928:-64.8728,0,-100.497	0/1:89:54,35:54:1932:35:1252:-86.1934,0,-147.365	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:152:0,152:0:0:152:5452:-490.802,-45.7566,0	0/1:69:38,31:38:1368:31:1112:-79.6203,0,-102.65	1/1:206:0,206:0:0:206:7387:-664.875,-62.0122,0	1/1:190:0,190:0:0:190:6835:-615.216,-57.1957,0	0/1:56:43,13:43:1540:13:468:-25.602,0,-122.035	0/1:99:45,54:45:1620:54:1902:-141.652,0,-116.288	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:95:1,94:1:36:94:3380:-300.816,-24.9996,0	1/1:140:0,140:0:0:140:5013:-451.315,-42.1442,0	0/1:268:150,118:150:5388:118:4202:-297.684,0,-404.373	1/1:108:1,107:1:36:107:3841:-342.058,-28.913,0	1/1:93:0,93:0:0:93:3344:-301.176,-27.9958,0	0/1:125:58,67:58:2071:67:2408:-179.347,0,-149.031	0/1:167:91,76:91:3268:76:2728:-195.491,0,-244.068	0/1:51:28,23:28:1004:23:828:-59.4916,0,-75.3233	0/1:100:53,46:53:1896:46:1648:-118.447,0,-140.756	0/1:78:38,40:38:1368:40:1436:-106.057,0,-99.9405	0/1:61:35,26:35:1256:26:936:-66.1966,0,-94.9825	0/1:102:55,47:55:1976:47:1688:-121.502,0,-147.41	0/1:94:59,35:59:2115:35:1256:-85.0485,0,-162.321	1/1:118:0,116:0:0:116:4153:-373.665,-34.9195,0	1/1:113:0,113:0:0:113:4052:-364.867,-34.0164,0
chr02	25656339	.	TAC	AAG,AAC	88686.5	PASS	AB=0.514207,0.482242;ABP=7.45265,9.95147;AC=130,54;AF=0.706522,0.293478;AN=184;AO=3249,1225;CIGAR=1X1M1X,1X2M;DP=4484;DPB=4484;DPRA=0,0.94328;EPP=7058.12,2663.06;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.71739,2.14035;MQM=40.4768,54.1755;MQMR=52;NS=92;NUMALT=2;ODDS=0.78316;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=113209,43788;QR=21;RO=1;RPL=0,0;RPP=7058.12,2663.06;RPPR=5.18177;RPR=3249,1225;RUN=1,1;SAF=0,0;SAP=7058.12,2663.06;SAR=3249,1225;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33,0:0:0:33,0:1150,0:-96.4963,-9.93399,0,-96.4963,-9.93399,-96.4963	1/1:38:0,38,0:0:0:38,0:1326,0:-113.436,-11.4391,0,-113.436,-11.4391,-113.436	1/2:42:0,20,22:0:0:20,22:712,779:-117.91,-63.4534,-57.4328,-54.8001,0,-48.1774	1/2:92:0,57,35:0:0:57,35:1993,1252:-259.293,-102.279,-85.1204,-157.365,0,-146.829	1/2:15:0,8,7:0:0:8,7:283,252:-42.5891,-20.8855,-18.4772,-22.0515,0,-19.9443	1/2:25:0,18,7:0:0:18,7:622,252:-68.3983,-20.8582,-15.4397,-47.89,0,-45.7828	1/2:51:0,28,23:0:0:28,23:983,828:-144.373,-67.8664,-59.4376,-76.8562,0,-69.9325	1/2:37:0,17,20:0:0:17,20:582,705:-101.862,-57.5964,-52.4789,-44.6014,0,-38.5808	1/2:51:0,28,22:0:0:28,22:984,792:-138.874,-64.5426,-56.1138,-74.4153,0,-67.7926	1/2:33:0,24,9:0:0:24,9:857,320:-93.4611,-26.4086,-19.1839,-67.4046,0,-64.6953	1/1:42:0,42,0:0:0:42,0:1466,0:-129.115,-12.6433,0,-129.115,-12.6433,-129.115	1/2:54:0,18,35:0:0:18,35:636,1256:-150.502,-101.853,-96.4349,-48.7699,0,-38.2339	1/2:46:0,23,23:0:0:23,23:796,828:-127.497,-67.2819,-60.3582,-60.5553,0,-53.6316	1/2:55:0,27,28:0:0:27,28:954,990:-155.234,-80.7303,-72.6025,-74.85,0,-66.4212	1/2:30:0,14,16:0:0:14,16:500,576:-86.9352,-47.3209,-43.1065,-39.9677,0,-35.1512	1/2:37:0,22,15:0:0:22,15:774,536:-104.254,-43.8634,-37.2408,-60.739,0,-56.2235	1/1:22:0,22,0:0:0:22,0:770,0:-64.9759,-6.62266,0,-64.9759,-6.62266,-64.9759	1/1:19:0,19,0:0:0:19,0:680,0:-56.5975,-5.71957,0,-56.5975,-5.71957,-56.5975	1/1:13:0,13,0:0:0:13,0:455,0:-39.0172,-3.91339,0,-39.0172,-3.91339,-39.0172	1/2:58:0,33,24:0:0:33,24:1146,860:-160.489,-70.0871,-60.1531,-90.4015,0,-83.1768	1/1:68:0,68,0:0:0:68,0:2387,0:-206.605,-20.47,0,-206.605,-20.47,-206.605	1/1:78:0,78,0:0:0:78,0:2722,0:-240.026,-23.4803,0,-240.026,-23.4803,-240.026	1/2:86:0,49,36:0:0:49,36:1692,1284:-237.798,-104.591,-89.8407,-133.298,0,-122.461	1/1:42:0,42,0:0:0:42,0:1469,0:-126.633,-12.6433,0,-126.633,-12.6433,-126.633	1/1:42:0,42,0:0:0:42,0:1480,0:-127.173,-12.6433,0,-127.173,-12.6433,-127.173	1/1:162:0,162,0:0:0:162,0:5621,0:-495.589,-48.7669,0,-495.589,-48.7669,-495.589	1/1:104:0,104,0:0:0:104,0:3608,0:-312.683,-31.3071,0,-312.683,-31.3071,-312.683	1/1:13:0,13,0:0:0:13,0:460,0:-40.1074,-3.91339,0,-40.1074,-3.91339,-40.1074	1/2:90:0,44,46:0:0:44,46:1509,1652:-253.42,-135.071,-121.826,-118.695,0,-104.847	1/2:68:0,31,37:0:0:31,37:1074,1309:-190.243,-106.578,-97.2459,-84.0069,0,-72.8688	1/2:49:0,20,29:0:0:20,29:689,1031:-138.763,-84.2889,-78.2683,-54.8181,0,-46.0882	1/2:4:0,2,2:0:0:2,2:57,68:-10.21,-5.84886,-5.2468,-4.66959,0,-4.06753	1/1:6:0,6,0:0:0:6,0:198,0:-17.073,-1.80618,0,-17.073,-1.80618,-17.073	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:136,0:-11.8704,-1.20412,0,-11.8704,-1.20412,-11.8704	.:.:.:.:.:.:.:.	1/2:106:0,54,52:0:0:54,52:1852,1868:-300.479,-152.57,-136.314,-148.257,0,-132.604	1/2:82:0,35,47:0:0:35,47:1210,1673:-230.087,-136.115,-125.579,-94.3129,0,-80.1645	1/2:27:0,15,12:0:0:15,12:531,432:-75.4193,-35.5102,-30.9948,-40.2548,0,-36.6424	1/1:3:0,3,0:0:0:3,0:108,0:-9.52747,-0.90309,0,-9.52747,-0.90309,-9.52747	1/1:53:0,53,0:0:0:53,0:1849,0:-159.8,-15.9546,0,-159.8,-15.9546,-159.8	1/2:19:0,9,10:0:0:9,10:320,360:-54.0281,-29.6876,-26.9783,-24.6865,0,-21.6762	1/2:53:0,24,29:0:0:24,29:807,1044:-147.466,-85.3899,-78.1651,-62.4148,0,-53.685	1/2:30:0,14,16:0:0:14,16:494,570:-85.8621,-46.7455,-42.5311,-39.466,0,-34.6495	1/2:33:0,17,16:0:0:17,16:572,572:-91.8425,-46.9607,-41.8432,-45.2242,0,-40.4077	1/1:91:0,91,0:0:0:91,0:3183,0:-279.652,-27.3937,0,-279.652,-27.3937,-279.652	1/2:29:0,20,9:0:0:20,9:675,324:-78.2023,-26.7168,-20.6962,-51.8322,0,-49.123	1/2:78:0,38,40:0:0:38,40:1335,1431:-221.747,-116.828,-105.388,-105.268,0,-93.2263	1/2:77:0,39,38:0:0:39,38:1359,1368:-218.853,-111.806,-100.066,-107.396,0,-95.9567	1/1:59:0,59,0:0:0:59,0:2063,0:-178.579,-17.7608,0,-178.579,-17.7608,-178.579	1/2:93:0,46,47:0:0:46,47:1590,1688:-264.549,-137.903,-124.055,-126.995,0,-112.846	1/2:5:0,4,1:0:0:4,1:140,36:-14.3863,-3.29465,-2.09053,-11.4477,0,-11.1467	1/1:53:0,52,1:0:0:52,1:1840,32:-153.611,-15.6536,0,-151.036,-12.7589,-150.735	1/1:39:0,39,0:0:0:39,0:1356,0:-118.41,-11.7402,0,-118.41,-11.7402,-118.41	1/2:6:0,2,4:0:0:2,4:72,144:-17.5649,-12.076,-11.474,-5.83438,0,-4.63026	1/2:81:0,40,40:0:0:40,40:1413,1423:-225.284,-115.733,-103.692,-109.618,0,-97.5763	1/1:19:0,19,0:0:0:19,0:679,0:-59.8655,-5.71957,0,-59.8655,-5.71957,-59.8655	1/2:2:0,1,1:0:0:1,1:36,36:-6.17466,-3.29624,-2.99521,-3.23509,0,-2.93406	1/2:11:0,6,5:0:0:6,5:211,180:-31.905,-15.0423,-13.2361,-17.2162,0,-15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chr02	25710162	.	G	A	109368	PASS	AB=0.504927;ABP=3.88755;AC=133;AF=0.707447;AN=188;AO=5281;CIGAR=1X;DP=7342;DPB=7342;DPRA=0;EPP=11470.6;EPPR=4476.24;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9835;MQMR=59.9879;NS=94;NUMALT=1;ODDS=0.718251;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189064;QR=73333;RO=2060;RPL=5281;RPP=11470.6;RPPR=4476.24;RPR=0;RUN=1;SAF=0;SAP=11470.6;SAR=5281;SRF=0;SRP=4476.24;SRR=2060;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	0/1:242:113,129:113:4036:129:4632:-344.192,0,-290.58	0/1:188:100,88:100:3592:88:3129:-225.242,0,-266.892	0/1:82:41,41:41:1472:41:1475:-108.362,0,-108.092	0/1:62:30,32:30:1047:32:1152:-85.3263,0,-75.8754	0/1:118:63,55:63:2236:55:1972:-142.233,0,-165.983	0/1:122:57,65:57:2021:65:2328:-173.054,0,-145.435	0/1:90:44,46:44:1576:46:1644:-121.156,0,-115.039	0/1:50:23,27:23:816:27:972:-72.7464,0,-58.7102	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:32:19,13:19:680:13:464:-32.4645,0,-51.8962	0/1:49:24,25:24:864:25:900:-66.5705,0,-63.3321	0/1:66:33,33:33:1180:33:1180:-86.6401,0,-86.6401	0/1:36:21,15:21:748:15:536:-37.7377,0,-56.8082	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:170:90,80:90:3204:80:2870:-207.362,0,-237.409	1/1:96:0,96:0:0:96:3417:-307.743,-28.8989,0	1/1:140:0,140:0:0:140:4998:-449.967,-42.1442,0	0/1:83:33,50:33:1161:50:1796:-136.937,0,-79.8092	1/1:127:0,127:0:0:127:4551:-409.755,-38.2308,0	1/1:75:0,75:0:0:75:2687:-242.075,-22.5773,0	1/1:289:0,289:0:0:289:10341:-930.613,-86.9977,0	1/1:182:0,182:0:0:182:6540:-588.679,-54.7875,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:247:124,123:124:4383:123:4408:-322.537,0,-320.289	0/1:103:53,50:53:1880:50:1777:-129.206,0,-138.473	0/1:83:31,52:31:1104:52:1868:-143.414,0,-74.6851	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:100:59,41:59:2085:41:1472:-102.673,0,-157.816	0/1:178:68,110:68:2432:110:3919:-299.319,0,-165.552	0/1:45:26,19:26:936:19:684:-48.344,0,-71.0131	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:89:0,89:0:0:89:3181:-286.512,-26.7917,0	0/1:21:11,10:11:380:10:360:-26.4227,0,-28.2103	0/1:117:56,61:56:1995:61:2184:-161.604,0,-144.603	0/1:23:9,14:9:320:14:504:-38.7744,0,-22.2187	0/1:27:12,15:12:420:15:540:-40.8087,0,-30.0062	1/1:130:1,129:1:36:129:4623:-412.634,-35.5356,0	0/1:81:41,40:41:1460:40:1406:-102.45,0,-107.313	0/1:157:82,75:82:2924:75:2663:-192.653,0,-216.134	0/1:96:34,62:34:1200:62:2228:-171.885,0,-79.3204	1/1:121:0,121:0:0:121:4338:-390.594,-36.4246,0	0/1:141:73,68:73:2620:68:2440:-177.41,0,-193.602	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:139:0,139:0:0:139:4980:-448.348,-41.8432,0	1/1:67:0,67:0:0:67:2400:-214.806,-20.169,0	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/1:87:43,44:43:1540:44:1576:-115.942,0,-112.703	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:30:18,12:18:644:12:432:-30.1903,0,-49.2597	0/1:77:36,41:36:1284:41:1464:-108.877,0,-92.6841	1/1:96:0,96:0:0:96:3456:-311.251,-28.8989,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:79:0,79:0:0:79:2825:-254.489,-23.7814,0	1/1:174:0,174:0:0:174:6240:-561.694,-52.3792,0	0/1:67:37,30:37:1316:30:1076:-76.9838,0,-98.5728	1/1:83:0,83:0:0:83:2946:-265.372,-24.9855,0	1/1:150:0,150:0:0:150:5345:-481.182,-45.1545,0	0/1:126:83,42:83:2937:42:1508:-98.026,0,-226.574	0/1:13:9,4:9:316:4:144:-9.40023,0,-24.8655	0/1:73:36,37:36:1288:37:1309:-96.1344,0,-94.2484	0/1:63:31,32:31:1108:32:1144:-84.3046,0,-81.0661	1/1:25:0,25:0:0:25:892:-80.5991,-7.52575,0	1/1:172:0,172:0:0:172:6168:-555.217,-51.7772,0	0/1:31:21,10:21:744:10:356:-23.0493,0,-57.9524	1/1:220:0,220:0:0:220:7856:-707.066,-66.2266,0	1/1:125:0,125:0:0:125:4492:-404.41,-37.6288,0	0/1:170:65,105:65:2312:105:3768:-288.143,0,-157.166	0/1:36:12,24:12:428:24:864:-67.2455,0,-28.0217	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	1/1:69:0,69:0:0:69:2465:-222.102,-20.7711,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:186:89,97:89:3171:97:3465:-255.842,0,-229.623	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	0/1:31:10,21:10:343:21:752:-58.6743,0,-21.8686	0/1:78:49,29:49:1738:29:1040:-70.434,0,-133.223	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:42:19,23:19:684:23:815:-61.0281,0,-49.2471	0/1:42:24,18:24:856:18:648:-46.0086,0,-64.7178	0/1:30:17,13:17:608:13:464:-33.0666,0,-46.0211	0/1:53:29,24:29:1032:24:856:-61.4065,0,-77.2389	0/1:25:21,4:21:740:4:144:-5.78787,0,-59.3976	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0
chr02	25742371	.	T	C	34212.6	PASS	AB=0.525219;ABP=24.4769;AC=57;AF=0.303191;AN=188;AO=2053;CIGAR=1X;DP=6631;DPB=6631;DPRA=1.06047;EPP=4461.04;EPPR=9930.98;GTI=1;LEN=1;MEANALT=1.03279;MQM=59.9795;MQMR=59.979;NS=94;NUMALT=1;ODDS=2.32647;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72587;QR=163606;RO=4576;RPL=2053;RPP=4461.04;RPPR=9930.98;RPR=0;RUN=1;SAF=2053;SAP=4461.04;SAR=0;SRF=4576;SRP=9939.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:85:49,36:49:1745:36:1264:-88.4726,0,-131.745	0/1:187:101,86:101:3608:86:3040:-217.537,0,-268.631	0/1:21:5,16:5:180:16:576:-45.8534,0,-10.2304	0/1:26:8,18:8:288:18:633:-49.4683,0,-18.4406	0/1:82:39,43:39:1382:43:1539:-114.118,0,-99.9928	0/1:85:35,50:35:1256:50:1782:-135.074,0,-87.7577	0/1:50:25,25:25:896:25:884:-64.8269,0,-65.9089	0/1:92:26,66:26:936:66:2348:-183.882,0,-56.8647	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/1:104:50,54:50:1783:54:1897:-139.699,0,-129.445	0/1:83:43,40:43:1535:40:1400:-101.309,0,-113.457	0/1:74:30,44:30:1061:44:1559:-118.325,0,-73.5231	0/1:65:34,31:34:1215:31:1083:-78.2111,0,-90.0888	0/1:53:16,37:16:564:37:1316:-102.787,0,-35.1357	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:109:45,64:45:1601:64:2261:-170.94,0,-111.566	0/0:95:95,0:95:3388:0:0:0,-28.5978,-305.134	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:52:23,29:23:820:29:1008:-75.3745,0,-58.469	0/0:38:38,0:38:1355:0:0:0,-11.4391,-121.472	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:137:136,1:136:4840:1:36:0,-37.6428,-430.868	0/0:125:125,0:125:4466:0:0:0,-37.6287,-402.109	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/1:215:112,103:112:4032:103:3679:-266.536,0,-298.344	0/1:90:50,40:50:1788:40:1394:-98.6611,0,-134.11	0/1:60:28,32:28:1008:32:1152:-85.9283,0,-72.9746	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:12:4,8:4:144:8:280:-21.9269,0,-9.70126	0/1:186:98,88:98:3512:88:3110:-224.136,0,-260.298	0/1:48:32,15:32:1144:15:521:-32.7089,0,-88.7614	0/1:54:26,28:26:927:28:995:-73.6084,0,-67.4917	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/1:40:11,29:11:396:29:1022:-80.2497,0,-23.9415	0/1:89:45,44:45:1604:44:1498:-108.311,0,-117.858	0/1:50:25,25:25:875:25:892:-65.5482,0,-64.0136	0/1:56:30,26:30:1071:26:898:-64.2746,0,-79.8439	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/1:69:37,32:37:1316:32:1152:-83.2191,0,-97.9707	0/1:111:70,41:70:2503:41:1453:-97.6496,0,-192.108	0/1:68:39,29:39:1404:29:1032:-72.7234,0,-106.189	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:99:45,54:45:1616:54:1923:-143.544,0,-115.928	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:86:38,48:38:1351:48:1698:-127.216,0,-96.001	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:12:8,4:8:284:4:140:-9.33222,0,-22.291	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:77:36,41:36:1292:41:1468:-109.237,0,-93.4045	0/0:136:132,4:132:4709:4:140:0,-27.9955,-411.025	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:204:204,0:204:7315:0:0:0,-61.4101,-658.398	0/0:79:76,3:76:2689:3:100:0,-14.4515,-232.925	0/1:50:22,28:22:788:28:989:-74.2705,0,-56.1933	0/0:66:65,1:65:2302:1:32:0,-16.6687,-204.239	0/0:85:84,1:84:3012:1:36:0,-21.9893,-267.713	0/1:136:48,87:48:1705:87:3069:-235.438,0,-112.735	0/1:57:23,34:23:828:34:1177:-89.0724,0,-57.6854	0/1:39:16,23:16:576:23:824:-62.7431,0,-40.4348	0/1:54:30,24:30:1061:24:847:-60.2931,0,-79.5437	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2702	0/0:110:110,0:110:3922:0:0:0,-33.1133,-353.173	0/1:71:33,38:33:1184:38:1360:-101.327,0,-85.487	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/0:137:137,0:137:4915:0:0:0,-41.2411,-442.499	0/1:47:17,30:17:608:30:1072:-82.644,0,-40.9036	0/1:83:43,40:43:1544:40:1399:-101.218,0,-114.268	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.57	0/1:101:50,51:50:1800:51:1809:-132.686,0,-131.878	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/1:28:9,19:9:324:19:680:-53.1003,0,-21.077	0/1:118:54,64:54:1917:64:2257:-167.869,0,-137.284	0/1:21:7,14:7:248:14:496:-38.6526,0,-16.3426	0/1:73:38,35:38:1368:35:1247:-90.5589,0,-101.446	0/1:73:31,42:31:1103:42:1460:-109.714,0,-77.6046	0/1:65:27,38:27:968:38:1356:-102.686,0,-67.8704	0/1:175:94,81:94:3343:81:2855:-204.507,0,-248.408	0/1:65:19,46:19:684:46:1625:-126.97,0,-42.3234	0/0:170:170,0:170:6090:0:0:0,-51.1751,-548.2	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.657
chr02	25748368	.	G	A	106957	PASS	AB=0.527746;ABP=26.3872;AC=130;AF=0.706522;AN=184;AO=5077;CIGAR=1X;DP=6740;DPB=6740;DPRA=21.3746;EPP=10906.3;EPPR=3497.79;GTI=6;LEN=1;MEANALT=1.02222;MQM=59.8318;MQMR=35.9121;NS=92;NUMALT=1;ODDS=1.96604;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181584;QR=59417;RO=1661;RPL=5063;RPP=10906.3;RPPR=3497.79;RPR=14;RUN=1;SAF=5077;SAP=11027.6;SAR=0;SRF=1661;SRP=3609.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1065:-96.0299,-9.0309,0	1/1:108:1,107:1:36:107:3820:-340.605,-29.1236,0	0/1:95:33,62:33:1180:62:2201:-169.755,0,-70.6258	0/1:164:82,82:82:2944:82:2943:-215.554,0,-188.766	0/1:73:39,34:39:1404:34:1212:-87.3248,0,-95.9381	0/1:64:22,42:22:788:42:1485:-114.677,0,-47.8095	0/1:102:38,64:38:1356:64:2291:-175.735,0,-78.3747	0/1:109:38,71:38:1364:71:2535:-193.782,0,-80.154	0/1:54:29,25:29:1044:25:895:-64.6031,0,-71.6592	0/1:67:35,32:35:1252:32:1148:-83.4608,0,-82.0249	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.0282	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.58142	0/1:14:3,11:3:108:11:388:-31.0429,0,-5.27086	0/1:17:5,12:5:180:12:432:-34.1037,0,-9.81482	0/1:7:4,3:4:144:3:108:-7.96796,0,-10.4269	1/1:24:0,24:0:0:24:849:-76.7278,-7.22472,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:184:82,102:82:2944:102:3653:-273.562,0,-181.04	1/1:107:0,107:0:0:107:3821:-343.998,-32.2102,0	1/1:153:0,153:0:0:153:5454:-490.982,-46.0576,0	0/1:135:80,55:80:2853:55:1976:-137.473,0,-188.724	1/1:90:0,90:0:0:90:3210:-289.122,-27.0927,0	1/1:104:0,104:0:0:104:3736:-336.42,-31.3071,0	1/1:339:1,338:1:36:338:12114:-1086.64,-98.7501,0	1/1:110:0,110:0:0:110:3936:-354.346,-33.1133,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:222:119,103:119:4252:103:3651:-261.875,0,-281.309	0/1:142:70,72:70:2501:72:2584:-190.058,0,-164.446	0/1:131:66,65:66:2349:65:2336:-170.978,0,-151.28	.:.:.:.:.:.:.:.	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-18.3693	0/1:16:4,12:4:144:12:432:-34.4047,0,-7.38991	0/1:221:99,122:99:3525:122:4326:-322.811,0,-230.289	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.37807	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.9031	1/1:168:0,168:0:0:168:5989:-539.028,-50.573,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-6.81978	0/1:124:61,62:61:2188:62:2220:-162.796,0,-144.226	0/1:11:4,7:4:144:7:252:-19.7176,0,-8.74836	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:118:0,118:0:0:118:4221:-380.061,-35.5215,0	0/1:106:48,58:48:1728:58:2069:-154.57,0,-113.943	0/1:161:71,90:71:2522:90:3230:-242.443,0,-150.324	0/1:90:35,55:35:1256:55:1980:-151.281,0,-74.6929	1/1:88:1,87:1:36:87:3132:-278.856,-23.2445,0	0/1:134:67,67:67:2391:67:2408:-176.636,0,-156.426	0/1:12:6,5:6:216:5:180:-13.0185,0,-14.3293	1/1:116:0,116:0:0:116:4149:-373.592,-34.9195,0	1/1:82:0,82:0:0:82:2944:-265.02,-24.6845,0	0/1:12:6,6:6:212:6:212:-15.8124,0,-14.7583	0/1:83:40,43:40:1431:43:1548:-114.628,0,-92.3263	1/1:65:0,65:0:0:65:2328:-209.778,-19.567,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-15.8133	0/1:22:12,10:12:432:10:356:-25.7586,0,-29.4509	0/1:82:46,36:46:1652:36:1296:-90.4493,0,-114.291	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:205:0,205:0:0:205:7372:-663.489,-61.7112,0	1/1:174:0,174:0:0:174:6248:-562.253,-52.3792,0	0/1:67:20,47:20:720:47:1688:-132.038,0,-41.2922	1/1:84:1,83:1:36:83:2953:-262.404,-21.6882,0	1/1:195:1,194:1:36:194:6921:-619.708,-55.4547,0	0/1:139:86,53:86:3088:53:1900:-129.435,0,-208.85	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.43644	0/1:68:28,40:28:989:40:1428:-108.347,0,-61.5107	0/1:24:5,19:5:180:19:684:-54.6656,0,-8.22141	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:102:0,102:0:0:102:3652:-328.881,-30.7051,0	0/1:15:10,5:10:360:5:169:-11.0259,0,-26.0086	1/1:142:0,142:0:0:142:5085:-457.788,-42.7463,0	1/1:142:0,142:0:0:142:5088:-458.058,-42.7463,0	0/1:138:55,83:55:1952:83:2941:-223.372,0,-120.262	0/1:40:15,25:15:536:25:885:-67.9206,0,-33.1018	0/1:26:19,7:19:684:7:252:-15.2022,0,-49.2048	1/1:78:0,78:0:0:78:2766:-249.086,-23.4803,0	1/1:77:0,77:0:0:77:2737:-246.57,-23.1793,0	0/1:204:121,83:121:4328:83:2971:-206.211,0,-282.755	1/1:49:0,49:0:0:49:1760:-158.683,-14.7505,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-4.57408	0/1:10:7,3:7:252:3:108:-7.06487,0,-18.6703	0/1:14:3,11:3:104:11:396:-31.7683,0,-5.00498	0/1:12:2,10:2:72:10:360:-29.1273,0,-2.82408	.:.:.:.:.:.:.:.	0/1:16:4,12:4:144:12:432:-34.4047,0,-7.71764	0/1:12:5,7:5:176:7:252:-19.4166,0,-10.2352	1/1:117:0,117:0:0:117:4173:-375.725,-35.2205,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0
chr02	25748372	.	TT	TA,GA	142075	PASS	AB=0.525155,0.473714;ABP=22.4566,24.2438;AC=130,54;AF=0.706522,0.293478;AN=184;AO=5122,1687;CIGAR=1M1X,2X;DP=6817;DPB=6817;DPRA=21.619,1.08588;EPP=11116.6,3511.61;EPPR=0;GTI=4;LEN=1,2;MEANALT=1.66667,2.01786;MQM=59.8368,35.8986;MQMR=0;NS=92;NUMALT=2;ODDS=0.198509;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=183413,59765;QR=0;RO=0;RPL=5121,18;RPP=11116.6,3511.61;RPPR=0;RPR=1,1669;RUN=1,1;SAF=5122,1687;SAP=11125.3,3666.28;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1076,0:-97.023,-9.0309,0,-97.023,-9.0309,-97.023	1/1:113:0,112,1:0:0:112,1:4002,36:-360.026,-33.7154,0,-357.278,-30.6288,-356.977	1/2:94:0,61,33:0:0:61,33:2188,1175:-268.046,-89.5656,-71.2027,-178.823,0,-168.889	1/2:166:0,83,83:0:0:83,83:2974,2937:-455.669,-213.281,-188.296,-242.726,0,-217.741	1/2:74:0,34,40:0:0:34,40:1209,1440:-207.368,-108.921,-98.6861,-98.7928,0,-86.7516	1/2:63:0,41,22:0:0:41,22:1464,792:-180.079,-60.7105,-48.3682,-119.714,0,-113.091	1/2:105:0,66,39:0:0:66,39:2364,1366:-291.755,-98.9486,-79.0806,-193.137,0,-181.397	1/2:110:0,71,39:0:0:71,39:2539,1387:-308.635,-103.391,-82.0177,-205.581,0,-193.841	1/2:55:0,26,29:0:0:26,29:931,1044:-155.108,-79.185,-71.3582,-76.2704,0,-67.5405	1/2:66:0,31,35:0:0:31,35:1108,1258:-182.327,-91.9694,-82.6375,-90.6991,0,-80.163	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:8:0,6,2:0:0:6,2:216,72:-23.4747,-5.83438,-4.0282,-17.9843,0,-17.3823	1/2:6:0,5,1:0:0:5,1:174,36:-17.2424,-3.08657,-1.58142,-14.4961,0,-14.1951	1/2:14:0,11,3:0:0:11,3:396,108:-40.9103,-8.58219,-5.27086,-32.6714,0,-31.7683	1/2:17:0,12,5:0:0:12,5:432,167:-47.82,-12.5324,-8.92003,-35.6088,0,-34.1037	1/2:7:0,3,4:0:0:3,4:104,144:-19.7865,-11.33,-10.4269,-8.79971,0,-7.59559	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:185:0,103,82:0:0:103,82:3697,2902:-510.637,-209.07,-178.064,-301.903,0,-277.218	1/1:110:0,110,0:0:0:110,0:3940,0:-354.701,-33.1133,0,-354.701,-33.1133,-354.701	1/1:153:0,153,0:0:0:153,0:5477,0:-493.051,-46.0576,0,-493.051,-46.0576,-493.051	1/2:138:0,56,82:0:0:56,82:2016,2928:-375,-210.49,-193.632,-164.853,0,-140.168	1/1:90:0,90,0:0:0:90,0:3236,0:-291.458,-27.0927,0,-291.458,-27.0927,-291.458	1/1:105:0,105,0:0:0:105,0:3741,0:-336.871,-31.6082,0,-336.871,-31.6082,-336.871	1/1:340:0,339,1:0:0:339,1:12160,36:-1093.88,-102.049,0,-1091.21,-99.0512,-1090.91	1/1:112:0,112,0:0:0:112,0:4024,0:-362.261,-33.7154,0,-362.261,-33.7154,-362.261	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:225:0,106,119:0:0:106,119:3806,4183:-618.244,-307.859,-275.95,-310.726,0,-274.903	1/2:145:0,74,71:0:0:74,71:2660,2518:-405.347,-188.326,-166.049,-217.364,0,-195.991	1/2:133:0,67,66:0:0:67,66:2412,2342:-367.44,-170.7,-150.531,-197.081,0,-177.213	.:.:.:.:.:.:.:.	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:11:0,4,7:0:0:4,7:144,252:-31.3308,-19.5734,-18.3693,-12.1095,0,-10.0023	1/2:15:0,11,4:0:0:11,4:396,144:-43.3358,-11.0023,-7.69094,-32.6714,0,-31.4673	1/2:223:0,123,100:0:0:123,100:4374,3556:-625.951,-269.666,-232.639,-356.628,0,-326.525	1/2:7:0,4,3:0:0:4,3:144,108:-20.3439,-8.58219,-7.37807,-12.1095,0,-11.2064	2/2:5:0,0,5:0:0:0,5:0,175:-14.5659,-14.5659,-14.5659,-1.50515,-1.50515,0	1/1:173:0,171,0:0:0:171,0:6132,0:-551.531,-51.4761,0,-551.531,-51.4761,-551.531	1/2:6:0,3,3:0:0:3,3:108,108:-16.561,-7.72287,-6.81978,-9.17208,0,-8.26899	1/2:126:0,62,64:0:0:62,64:2228,2249:-349.972,-168.194,-149.53,-182.12,0,-162.854	1/2:12:0,7,5:0:0:7,5:252,180:-34.321,-13.7426,-11.6354,-20.9217,0,-19.4166	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:118:0,118,0:0:0:118,0:4224,0:-380.333,-35.5215,0,-380.333,-35.5215,-380.333	1/2:107:0,58,49:0:0:58,49:2080,1745:-302.439,-132.774,-115.314,-170.011,0,-155.26	1/2:163:0,90,72:0:0:90,72:3215,2534:-441.121,-178.974,-151.881,-262.138,0,-240.464	1/2:89:0,55,34:0:0:55,34:1954,1203:-246.838,-87.6273,-71.0706,-159.543,0,-149.308	1/1:89:0,88,1:0:0:88,1:3160,36:-284.297,-26.4906,0,-281.677,-23.5455,-281.376	1/2:139:0,69,70:0:0:69,70:2446,2481:-382.574,-183.292,-162.521,-199.622,0,-178.55	1/2:12:0,5,7:0:0:5,7:180,238:-32.1902,-17.4807,-15.9755,-15.0469,0,-12.9397	1/1:116:0,116,0:0:0:116,0:4172,0:-375.66,-34.9195,0,-375.66,-34.9195,-375.66	1/1:82:0,82,0:0:0:82,0:2932,0:-263.991,-24.6845,0,-263.991,-24.6845,-263.991	1/2:12:0,6,6:0:0:6,6:216,205:-33.6352,-15.9926,-14.1864,-17.9843,0,-16.1782	1/2:84:0,43,41:0:0:43,41:1531,1461:-232.214,-107.415,-94.4709,-125.138,0,-112.796	1/1:65:0,65,0:0:0:65,0:2340,0:-210.857,-19.567,0,-210.857,-19.567,-210.857	1/2:7:0,1,6:0:0:1,6:36,205:-18.5194,-15.5757,-15.2746,-3.29724,0,-1.49106	1/2:22:0,10,12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chr02	25748383	.	T	A	22486.9	PASS	AB=0.473985;ABP=23.5729;AC=54;AF=0.293478;AN=184;AO=1670;CIGAR=1X;DP=6733;DPB=6733;DPRA=1.07412;EPP=3629.37;EPPR=10988.5;GTI=4;LEN=1;MEANALT=1.05263;MQM=35.9353;MQMR=59.8381;NS=92;NUMALT=1;ODDS=0.928008;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59810;QR=181145;RO=5059;RPL=1670;RPP=3629.37;RPPR=10988.5;RPR=0;RUN=1;SAF=1670;SAP=3629.37;SAR=0;SRF=5059;SRP=10988.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.3834	0/0:108:107,1:107:3836:1:36:0,-29.1236,-342.044	0/1:92:60,32:60:2144:32:1133:-68.479,0,-165.533	0/1:164:82,82:82:2933:82:2936:-188.38,0,-214.652	0/1:73:33,40:33:1188:40:1436:-98.73,0,-85.1671	0/1:62:41,20:41:1451:20:705:-41.3612,0,-112.183	0/1:103:65,38:65:2328:38:1364:-78.6019,0,-178.761	0/1:109:70,39:70:2500:39:1381:-81.8126,0,-190.631	0/1:56:27,29:27:968:29:1044:-71.0571,0,-70.5667	0/1:66:31,35:31:1112:35:1256:-82.5268,0,-80.5234	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/1:8:6,2:6:216:2:72:-4.0282,0,-17.3823	0/1:6:5,1:5:180:1:36:-1.58142,0,-14.7459	0/1:14:11,3:11:388:3:108:-5.27086,0,-31.0429	0/1:17:12,5:12:428:5:180:-9.81482,0,-33.7413	0/1:7:3,4:3:104:4:144:-10.4269,0,-7.5956	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:185:103,82:103:3685:82:2936:-180.106,0,-276.071	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.584	0/0:152:152,0:152:5447:0:0:0,-45.7566,-490.352	0/1:136:55,80:55:1968:80:2876:-189.667,0,-136.394	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.262	0/0:103:103,0:103:3677:0:0:0,-31.0061,-331.124	0/0:342:341,1:341:12230:1:36:0,-99.6532,-1097.07	0/0:110:110,0:110:3960:0:0:0,-33.1133,-356.503	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:224:104,120:104:3728:120:4296:-284.955,0,-268.199	0/1:145:74,71:74:2629:71:2552:-167.761,0,-193.202	0/1:132:65,67:65:2313:67:2412:-155.471,0,-168.607	.:.:.:.:.:.:.:.	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:4,7:4:144:7:252:-18.3693,0,-10.0023	0/1:16:12,4:12:432:4:144:-7.38991,0,-34.4047	0/1:222:123,99:123:4378:99:3532:-230.878,0,-327.189	0/1:7:4,3:4:144:3:108:-7.37807,0,-11.2064	1/1:5:0,5:0:0:5:180:-14.9031,-1.50515,0	0/0:170:170,0:170:6077:0:0:0,-51.1751,-546.943	0/1:6:3,3:3:108:3:108:-6.81978,0,-8.26899	0/1:124:62,62:62:2220:62:2224:-146.441,0,-162.731	0/1:11:7,4:7:248:4:140:-8.52221,0,-19.3529	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:117:116,0:116:4164:0:0:0,-34.9195,-374.614	0/1:103:56,47:56:2008:47:1677:-110.628,0,-149.987	0/1:159:88,71:88:3148:71:2552:-154.251,0,-235.679	0/1:89:54,35:54:1936:35:1252:-74.793,0,-147.638	0/0:87:86,1:86:3092:1:36:0,-22.9434,-275.258	0/1:138:68,70:68:2444:70:2504:-164.218,0,-178.67	0/1:11:4,7:4:144:7:252:-16.5797,0,-10.0023	0/0:118:118,0:118:4228:0:0:0,-35.5215,-380.7	0/0:80:80,0:80:2842:0:0:0,-24.0824,-255.841	0/1:11:5,6:5:176:6:216:-15.3205,0,-12.8737	0/1:83:43,40:43:1544:40:1436:-92.9496,0,-114.268	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.141	0/1:7:1,6:1:36:6:216:-16.0374,0,-1.49106	0/1:22:10,12:10:352:12:428:-29.1215,0,-25.3955	0/1:80:34,46:34:1224:46:1656:-115.15,0,-84.5742	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:208:208,0:208:7456:0:0:0,-62.6142,-671.038	0/0:172:172,0:172:6184:0:0:0,-51.7772,-556.481	0/1:67:47,20:47:1684:20:720:-41.2922,0,-131.678	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.731	0/0:193:192,1:192:6862:1:32:0,-55.0751,-614.62	0/1:138:51,87:51:1832:87:3124:-211.482,0,-123.619	1/1:2:0,2:0:0:2:72:-6.43644,-0.60206,0	0/1:69:41,28:41:1472:28:996:-62.0684,0,-112.005	0/1:24:19,5:19:676:5:180:-8.22141,0,-53.9433	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:103:103,0:103:3681:0:0:0,-31.0061,-331.487	0/1:16:5,11:5:180:11:392:-28.6328,0,-11.7332	0/0:143:143,0:143:5127:0:0:0,-43.0473,-461.566	0/0:142:142,0:142:5103:0:0:0,-42.7463,-459.405	0/1:140:83,57:83:2972:57:2033:-126.486,0,-225.559	0/1:41:25,16:25:900:16:572:-35.8501,0,-68.9741	0/1:26:7,19:7:248:19:684:-49.2048,0,-14.8374	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.156	0/0:78:78,0:78:2799:0:0:0,-23.4803,-252.147	0/1:202:83,118:83:2968:118:4221:-275.803,0,-206.517	0/0:49:48,1:48:1720:1:36:0,-11.1522,-151.487	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:13:9,4:9:324:4:144:-7.20265,0,-25.5925	0/1:10:3,7:3:108:7:252:-18.6703,0,-7.06487	0/1:13:10,3:10:360:3:108:-5.57189,0,-28.8309	0/1:12:10,2:10:360:2:72:-2.82408,0,-29.1273	.:.:.:.:.:.:.:.	0/1:16:12,4:12:432:4:144:-7.71764,0,-34.4047	0/1:12:7,5:7:235:5:176:-10.0485,0,-17.8656	0/0:113:113,0:113:4048:0:0:0,-34.0164,-364.489	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596
chr02	25748564	.	GCATTGT	TCATTGTGT,TCATTGT	80632.3	PASS	AB=0.491412,0.504481;ABP=4.72607,3.47735;AC=132,52;AF=0.717391,0.282609;AN=184;AO=3527,1354;CIGAR=1X3M2I3M,1X6M;DP=4902;DPB=5914.29;DPRA=0,1.00315;EPP=7661.79,2908.54;EPPR=0;GTI=1;LEN=9,1;MEANALT=1.80435,2.18519;MQM=31.3326,58.5908;MQMR=0;NS=92;NUMALT=2;ODDS=0.947149;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=110130,48343;QR=0;RO=0;RPL=3527,1350;RPP=7661.79,2908.54;RPPR=0;RPR=0,4;RUN=1,1;SAF=0,0;SAP=7661.79,2943.18;SAR=3527,1354;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27,0:0:0:27,0:754,0:-60.8027,-8.12781,0,-60.8027,-8.12781,-60.8027	1/1:64:0,64,0:0:0:64,0:1786,0:-143.67,-19.2659,0,-143.67,-19.2659,-143.67	1/2:62:0,47,15:0:0:47,15:1314,536:-135.313,-44.0015,-29.853,-91.6423,0,-87.1268	1/2:95:0,47,48:0:0:47,48:1526,1712:-249.145,-139.73,-125.581,-109.739,0,-95.2891	1/2:65:0,27,38:0:0:27,38:806,1364:-168.681,-111.536,-103.408,-57.4511,0,-46.012	1/2:15:0,4,11:0:0:4,11:108,388:-39.343,-31.9393,-30.7352,-7.67372,0,-4.36239	1/2:72:0,49,23:0:0:49,23:1590,828:-183.552,-67.8689,-53.1184,-116.023,0,-109.099	1/2:109:0,41,67:0:0:41,67:1146,2396:-274.628,-194.965,-182.623,-79.6729,0,-59.5039	1/2:35:0,22,12:0:0:22,12:616,424:-77.2315,-34.4322,-27.8095,-42.7634,0,-39.151	1/2:42:0,28,14:0:0:28,14:915,500:-107.542,-41.1218,-32.6929,-66.7575,0,-62.5431	1/1:8:0,8,0:0:0:8,0:266,0:-22.0757,-2.40824,0,-22.0757,-2.40824,-22.0757	1/2:12:0,5,7:0:0:5,7:140,248:-30.0917,-20.3923,-18.8872,-9.9917,0,-7.88449	1/2:9:0,8,1:0:0:8,1:222,36:-18.602,-3.29465,-0.88641,-15.6544,0,-15.3534	1/2:16:0,13,3:0:0:13,3:390,108:-36.7661,-9.17208,-5.25869,-27.937,0,-27.0339	1/2:8:0,4,3:0:0:4,3:132,108:-18.5234,-8.9396,-7.73548,-9.68046,0,-8.77737	1/2:7:0,4,3:0:0:4,3:120,108:-17.6158,-9.15387,-7.94975,-8.78287,0,-7.87978	1/1:12:0,11,0:0:0:11,0:302,0:-24.1988,-3.31133,0,-24.1988,-3.31133,-24.1988	1/1:11:0,11,0:0:0:11,0:308,0:-24.9932,-3.31133,0,-24.9932,-3.31133,-24.9932	1/1:4:0,3,0:0:0:3,0:82,0:-6.54085,-0.90309,0,-6.54085,-0.90309,-6.54085	1/2:122:0,54,66:0:0:54,66:1773,2362:-321.085,-192.102,-175.846,-128.952,0,-109.084	1/1:62:0,62,0:0:0:62,0:1852,0:-150.164,-18.6639,0,-150.164,-18.6639,-150.164	1/1:90:0,89,0:0:0:89,0:3052,0:-251.744,-26.7917,0,-251.744,-26.7917,-251.744	1/2:41:0,19,21:0:0:19,21:627,741:-105.814,-60.2739,-54.5544,-45.5096,0,-39.188	1/1:89:0,89,0:0:0:89,0:2664,0:-216.233,-26.7917,0,-216.233,-26.7917,-216.233	1/1:69:0,69,0:0:0:69,0:2066,0:-167.529,-20.7711,0,-167.529,-20.7711,-167.529	1/1:216:0,215,0:0:0:215,0:7398,0:-609.394,-64.7215,0,-609.394,-64.7215,-609.394	1/1:125:0,124,0:0:0:124,0:3708,0:-300.119,-37.3277,0,-300.119,-37.3277,-300.119	1/1:10:0,10,0:0:0:10,0:300,0:-24.5626,-3.0103,0,-24.5626,-3.0103,-24.5626	1/2:176:0,78,98:0:0:78,98:2671,3492:-481.047,-284.812,-261.332,-196.567,0,-167.066	1/2:104:0,48,55:0:0:48,55:1434,1972:-262.468,-160.893,-146.443,-101.585,0,-85.0286	1/2:56:0,25,30:0:0:25,30:813,1072:-146.172,-87.1598,-79.6341,-59.0345,0,-50.0036	1/2:4:0,3,1:0:0:3,1:88,36:-9.42965,-3.29724,-2.39415,-6.46809,0,-6.16706	1/1:14:0,14,0:0:0:14,0:418,0:-34.0984,-4.21442,0,-34.0984,-4.21442,-34.0984	1/1:6:0,6,0:0:0:6,0:168,0:-13.7462,-1.80618,0,-13.7462,-1.80618,-13.7462	1/1:6:0,6,0:0:0:6,0:168,0:-13.7462,-1.80618,0,-13.7462,-1.80618,-13.7462	1/1:3:0,3,0:0:0:3,0:84,0:-6.99808,-0.90309,0,-6.99808,-0.90309,-6.99808	1/2:42:0,24,17:0:0:24,17:827,608:-110.756,-49.7163,-42.4916,-61.1609,0,-56.0434	1/2:166:0,89,77:0:0:89,77:2662,2749:-413.138,-224.411,-197.62,-189.042,0,-165.863	1/2:5:0,3,2:0:0:3,2:84,72:-12.0119,-6.23275,-5.32966,-6.09499,0,-5.49293	.:.:.:.:.:.:.:.	1/1:96:0,95,0:0:0:95,0:2825,0:-228.842,-28.5979,0,-228.842,-28.5979,-228.842	1/2:4:0,2,2:0:0:2,2:60,63:-9.33795,-5.09647,-4.49441,-4.5264,0,-3.92434	1/2:149:0,56,93:0:0:56,93:1673,3316:-388.929,-270.331,-253.473,-118.9,0,-90.9045	1/1:3:0,3,0:0:0:3,0:99,0:-8.39742,-0.90309,0,-8.39742,-0.90309,-8.39742	1/2:10:0,7,3:0:0:7,3:205,108:-23.3954,-9.00852,-6.90131,-14.7135,0,-13.8104	1/1:42:0,41,0:0:0:41,0:1393,0:-114.941,-12.3422,0,-114.941,-12.3422,-114.941	1/2:98:0,35,63:0:0:35,63:972,2264:-252.237,-184.804,-174.268,-67.7208,0,-48.7559	1/2:114:0,48,66:0:0:48,66:1553,2354:-304.708,-191.899,-177.45,-113.129,0,-93.2608	1/2:135:0,76,59:0:0:76,59:2472,2120:-352.573,-173.223,-150.345,-179.681,0,-161.92	1/1:51:0,51,0:0:0:51,0:1654,0:-135.509,-15.3525,0,-135.509,-15.3525,-135.509	1/2:132:0,60,72:0:0:60,72:2065,2565:-360.992,-209.07,-191.008,-152.255,0,-130.581	.:.:.:.:.:.:.:.	1/1:108:0,107,0:0:0:107,0:2979,0:-239.33,-32.2102,0,-239.33,-32.2102,-239.33	1/1:12:0,12,0:0:0:12,0:414,0:-34.4658,-3.61236,0,-34.4658,-3.61236,-34.4658	1/2:11:0,8,3:0:0:8,3:224,108:-24.6762,-9.16926,-6.76102,-15.8368,0,-14.9337	1/2:54:0,33,21:0:0:33,21:986,756:-131.862,-62.0456,-52.1116,-70.1408,0,-63.8192	1/1:30:0,30,0:0:0:30,0:964,0:-79.3288,-9.0309,0,-79.3288,-9.0309,-79.3288	1/2:3:0,2,1:0:0:2,1:68,36:-8.24021,-3.29724,-2.69518,-5.28615,0,-4.98512	1/2:18:0,7,11:0:0:7,11:241,392:-49.9721,-32.3016,-30.1943,-18.001,0,-14.6897	1/2:24:0,17,7:0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chr02	25753035	.	GAAGC	AAAGC,AAAGT	195817	PASS	AB=0.496997,0.497935;ABP=3.42764,3.20756;AC=132,56;AF=0.702128,0.297872;AN=188;AO=6526,2661;CIGAR=1X4M,1X3M1X;DP=9231;DPB=9231;DPRA=0,1.20263;EPP=14009.5,5737.95;EPPR=7.35324;GTI=1;LEN=1,5;MEANALT=2.08511,2.48387;MQM=56.7274,54.2446;MQMR=60;NS=94;NUMALT=2;ODDS=1.33579;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=233433,94065;QR=72;RO=2;RPL=19,5;RPP=14009.5,5737.95;RPPR=7.35324;RPR=6507,2656;RUN=1,1;SAF=6526,2661;SAP=14174,5781.3;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26,0:0:0:26,0:928,0:-83.7477,-7.82678,0,-83.7477,-7.82678,-83.7477	1/1:139:0,139,0:0:0:139,0:4981,0:-448.15,-41.8432,0,-448.15,-41.8432,-448.15	1/2:94:0,46,47:0:0:46,47:1656,1652:-269.149,-134.382,-120.535,-134.876,0,-120.728	1/2:246:0,136,109:0:0:136,109:4861,3842:-707.986,-312.02,-271.08,-396.106,0,-363.293	1/2:36:0,19,16:0:0:19,16:676,562:-100.629,-45.6873,-39.9677,-54.9348,0,-50.1183	1/2:52:0,29,23:0:0:29,23:1036,790:-148.829,-64.437,-55.7071,-84.7407,0,-77.817	1/2:118:0,46,72:0:0:46,72:1652,2567:-343.819,-209.134,-195.287,-135.043,0,-113.368	1/2:162:0,82,77:0:0:82,77:2929,2708:-458.864,-220.129,-195.444,-238.734,0,-215.555	1/2:134:0,76,58:0:0:76,58:2724,2037:-387.763,-165.884,-143.006,-222.232,0,-204.773	1/2:157:0,70,86:0:0:70,86:2486,3058:-449.715,-247.268,-226.196,-202.534,0,-176.645	1/1:40:0,40,0:0:0:40,0:1428,0:-128.666,-12.0412,0,-128.666,-12.0412,-128.666	1/2:62:0,31,31:0:0:31,31:1116,1107:-181.464,-90.4374,-81.1054,-91.3848,0,-82.0529	1/2:56:0,33,23:0:0:33,23:1172,802:-160.682,-65.335,-55.401,-95.6977,0,-88.774	1/2:49:0,27,22:0:0:27,22:968,774:-142.108,-63.313,-55.1852,-79.1495,0,-72.5269	1/2:58:0,23,35:0:0:23,35:813,1234:-166.36,-100.247,-93.3236,-66.4646,0,-55.9285	1/2:45:0,24,21:0:0:24,21:864,744:-131.167,-60.6867,-53.462,-70.836,0,-64.5144	1/1:60:0,60,0:0:0:60,0:2160,0:-194.412,-18.0618,0,-194.412,-18.0618,-194.412	1/1:52:0,52,0:0:0:52,0:1872,0:-168.713,-15.6536,0,-168.713,-15.6536,-168.713	1/1:30:0,30,0:0:0:30,0:1063,0:-95.6824,-9.0309,0,-95.6824,-9.0309,-95.6824	1/2:158:0,84,74:0:0:84,74:3009,2623:-458.6,-213.596,-188.309,-245.36,0,-223.084	1/1:147:0,147,0:0:0:147,0:5265,0:-473.715,-44.2514,0,-473.715,-44.2514,-473.715	1/1:118:0,118,0:0:0:118,0:4189,0:-376.203,-35.5215,0,-376.203,-35.5215,-376.203	1/2:120:0,46,72:0:0:46,72:1632,2559:-340.863,-208.033,-194.186,-132.851,0,-111.177	1/1:106:0,106,0:0:0:106,0:3798,0:-341.413,-31.9092,0,-341.413,-31.9092,-341.413	1/1:73:0,73,0:0:0:73,0:2616,0:-235.469,-21.9752,0,-235.469,-21.9752,-235.469	1/1:376:0,374,1:0:0:374,1:13384,36:-1201.06,-112.585,0,-1198.13,-109.65,-1197.83	1/1:214:2,211,1:2:72:211,1:7510,36:-668.155,-57.6423,0,-665.822,-60.5823,-671.395	1/1:34:0,34,0:0:0:34,0:1209,0:-109.006,-10.235,0,-109.006,-10.235,-109.006	1/2:299:0,160,137:0:0:160,137:5737,4842:-860.778,-393.5,-345.335,-467.345,0,-426.104	1/2:177:0,83,94:0:0:83,94:2972,3309:-511.481,-269.251,-244.265,-242.585,0,-214.288	1/2:137:0,74,63:0:0:74,63:2656,2234:-398.296,-181.82,-159.544,-216.831,0,-197.866	1/2:5:0,4,1:0:0:4,1:144,36:-15.0408,-3.29465,-2.09053,-12.1058,0,-11.8047	1/1:6:0,6,0:0:0:6,0:212,0:-19.4184,-1.80618,0,-19.4184,-1.80618,-19.4184	1/1:20:0,20,0:0:0:20,0:720,0:-65.0948,-6.0206,0,-65.0948,-6.0206,-65.0948	1/1:9:0,9,0:0:0:9,0:324,0:-29.4976,-2.70927,0,-29.4976,-2.70927,-29.4976	1/2:8:0,5,3:0:0:5,3:180,108:-23.7585,-9.16481,-7.65966,-14.9526,0,-14.0495	1/2:174:0,89,85:0:0:89,85:3176,3021:-504.018,-245.415,-218.623,-258.959,0,-233.371	1/2:266:0,133,132:0:0:133,132:4768,4618:-763.402,-374.795,-334.758,-388.606,0,-348.87	1/2:44:0,29,15:0:0:29,15:1040,534:-128.407,-43.8453,-35.1154,-84.918,0,-80.4025	1/2:4:0,2,2:0:0:2,2:72,72:-12.1028,-6.22973,-5.62767,-6.23275,0,-5.63069	1/1:162:0,162,0:0:0:162,0:5775,0:-519.57,-48.7669,0,-519.57,-48.7669,-519.57	1/2:23:0,12,11:0:0:12,11:428,395:-67.4338,-32.5554,-28.943,-35.236,0,-31.9247	1/2:141:0,84,56:0:0:84,56:3016,1985:-407.195,-161.381,-136.095,-245.889,0,-229.031	1/2:71:0,35,35:0:0:35,35:1256,1245:-203.833,-101.432,-90.8961,-102.52,0,-91.9842	1/2:66:0,31,33:0:0:31,33:1108,1168:-185.215,-94.993,-85.661,-90.2258,0,-80.2918	1/1:92:0,90,0:0:0:90,0:3228,0:-289.586,-27.0927,0,-289.586,-27.0927,-289.586	1/2:116:0,57,59:0:0:57,59:2044,2084:-336.192,-169.593,-152.434,-166.954,0,-149.193	1/2:197:0,113,84:0:0:113,84:4048,2957:-570.394,-240.639,-206.623,-330.109,0,-304.822	1/2:162:0,79,82:0:0:79,82:2802,2892:-461.205,-233.121,-209.34,-228.084,0,-203.4	1/1:158:0,155,0:0:0:155,0:5568,0:-500.544,-46.6597,0,-500.544,-46.6597,-500.544	1/2:204:0,90,113:0:0:90,113:3224,3966:-584.611,-322.224,-295.131,-262.441,0,-228.425	1/2:13:0,8,5:0:0:8,5:269,172:-36.073,-14.2949,-11.8866,-22.1187,0,-20.6136	1/1:124:0,123,1:0:0:123,1:4393,36:-395.005,-37.0267,0,-392.07,-33.732,-391.769	1/1:56:0,56,0:0:0:56,0:2016,0:-181.445,-16.8577,0,-181.445,-16.8577,-181.445	1/2:21:0,11,10:0:0:11,10:396,359:-61.9224,-29.6202,-26.3089,-32.6614,0,-29.6511	1/2:111:0,47,64:0:0:47,64:1688,2268:-321.692,-184.306,-170.157,-137.742,0,-118.476	1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chr02	25753051	.	A	T	132988	PASS	AB=0.499619;ABP=3.01693;AC=132;AF=0.702128;AN=188;AO=6458;CIGAR=1X;DP=9090;DPB=9090;DPRA=0;EPP=14026.4;EPPR=5707.47;GTI=1;LEN=1;MEANALT=1.04255;MQM=56.6936;MQMR=54.2581;NS=94;NUMALT=1;ODDS=1.43726;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=231286;QR=94255;RO=2627;RPL=6458;RPP=14026.4;RPPR=5707.47;RPR=0;RUN=1;SAF=6458;SAP=14026.4;SAR=0;SRF=2627;SRP=5707.47;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:864:-78.0607,-7.22472,0	1/1:140:0,140:0:0:140:4994:-449.264,-42.1442,0	0/1:94:47,47:47:1684:47:1680:-122.888,0,-123.199	0/1:244:107,137:107:3844:137:4904:-366.492,0,-271.731	0/1:35:17,18:17:608:18:648:-47.9618,0,-44.3756	0/1:50:21,29:21:756:29:1035:-78.2921,0,-53.229	0/1:118:73,45:73:2609:45:1620:-110.491,0,-198.353	0/1:160:77,83:77:2753:83:2984:-220.465,0,-199.476	0/1:130:57,73:57:2048:73:2606:-195.365,0,-145.12	0/1:154:84,70:84:3020:70:2489:-177.787,0,-222.595	1/1:40:0,40:0:0:40:1431:-128.922,-12.0412,0	0/1:61:30,31:30:1080:31:1116:-82.3539,0,-78.9762	0/1:53:21,32:21:743:32:1144:-87.1495,0,-51.1925	0/1:49:22,27:22:784:27:947:-70.6573,0,-56.0846	0/1:59:35,24:35:1260:24:864:-60.2191,0,-95.0418	0/1:45:20,24:20:720:24:860:-64.1068,0,-51.3163	1/1:60:0,60:0:0:60:2160:-194.412,-18.0618,0	1/1:52:0,52:0:0:52:1868:-168.354,-15.6536,0	1/1:30:0,30:0:0:30:1053:-94.8623,-9.0309,0	0/1:157:75,82:75:2688:82:2943:-217.327,0,-194.443	1/1:146:0,146:0:0:146:5237:-471.196,-43.9504,0	1/1:112:0,112:0:0:112:3983:-357.563,-33.7154,0	0/1:118:70,48:70:2497:48:1716:-118.852,0,-188.966	1/1:104:0,104:0:0:104:3732:-335.121,-31.3071,0	1/1:72:0,72:0:0:72:2580:-232.232,-21.6742,0	1/1:361:1,360:1:36:360:12933:-1156.57,-105.079,0	1/1:209:1,208:1:36:208:7427:-664.224,-59.3196,0	1/1:35:0,35:0:0:35:1252:-112.659,-10.5361,0	0/1:292:135,157:135:4856:157:5648:-419.84,0,-348.229	0/1:174:93,81:93:3344:81:2908:-209.433,0,-248.569	0/1:131:61,70:61:2181:70:2516:-187.15,0,-156.601	0/1:5:1,4:1:36:4:144:-11.8047,0,-2.09053	1/1:6:0,6:0:0:6:216:-19.7835,-1.80618,0	1/1:20:0,20:0:0:20:707:-63.9217,-6.0206,0	1/1:9:0,9:0:0:9:324:-29.4976,-2.70927,0	0/1:8:3,5:3:108:5:180:-14.0495,0,-7.65966	0/1:173:84,88:84:3020:88:3163:-232.421,0,-218.894	0/1:264:129,135:129:4640:135:4844:-356.288,0,-336.465	0/1:45:15,30:15:540:30:1051:-81.1594,0,-35.3549	0/1:4:2,2:2:72:2:72:-5.63069,0,-5.62767	1/1:156:0,156:0:0:156:5607:-504.441,-46.9607,0	0/1:23:11,12:11:396:12:432:-32.2865,0,-29.0331	0/1:141:57,84:57:2048:84:3007:-228.202,0,-141.688	0/1:71:36,35:36:1296:35:1256:-91.919,0,-94.6084	0/1:65:34,31:34:1224:31:1116:-81.0611,0,-90.6615	1/1:91:0,91:0:0:91:3199:-287.571,-27.3937,0	0/1:115:60,55:60:2156:55:1976:-143.377,0,-159.075	0/1:195:84,111:84:3012:111:3974:-298.824,0,-212.106	0/1:161:83,78:83:2973:78:2800:-203.571,0,-216.363	1/1:157:0,157:0:0:157:5624:-505.787,-47.2617,0	0/1:203:113,90:113:4044:90:3232:-229.398,0,-302.253	0/1:11:4,7:4:144:7:233:-17.9533,0,-9.98341	1/1:120:1,119:1:36:119:4276:-381.312,-32.5279,0	1/1:55:0,55:0:0:55:1964:-176.843,-16.5567,0	0/1:21:10,11:10:360:11:396:-29.6511,0,-26.3991	0/1:109:63,46:63:2268:46:1651:-115.795,0,-170.738	1/1:52:0,52:0:0:52:1856:-166.966,-15.6536,0	0/1:17:9,8:9:320:8:288:-21.131,0,-23.9858	0/1:40:24,16:24:864:16:567:-39.2005,0,-65.9128	0/1:95:52,43:52:1860:43:1544:-110.551,0,-138.588	1/1:78:0,78:0:0:78:2778:-250.062,-23.4803,0	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	1/1:274:0,274:0:0:274:9826:-883.138,-82.4822,0	1/1:222:0,222:0:0:222:7972:-715.876,-66.8287,0	0/1:84:42,42:42:1508:42:1504:-110.234,0,-110.078	1/1:71:0,71:0:0:71:2525:-227.291,-21.3731,0	1/1:229:3,226:3:108:226:8082:-716.723,-58.875,0	0/1:131:97,34:97:3476:34:1201:-68.7995,0,-272.745	0/1:13:3,10:3:108:10:360:-28.8218,0,-6.15451	0/1:89:44,45:44:1584:45:1612:-118.522,0,-115.806	0/1:74:44,30:44:1580:30:1076:-74.6723,0,-119.894	1/1:22:0,22:0:0:22:788:-71.2117,-6.62266,0	1/1:89:0,89:0:0:89:3196:-287.563,-26.7917,0	0/1:57:24,33:24:864:33:1169:-88.2589,0,-60.5778	1/1:120:0,120:0:0:120:4308:-387.62,-36.1236,0	1/1:137:0,137:0:0:137:4919:-442.451,-41.2411,0	0/1:61:24,37:24:860:37:1311:-99.37,0,-59.2553	0/1:102:57,45:57:2036:45:1611:-114.264,0,-152.497	0/1:13:7,6:7:252:6:216:-15.8437,0,-19.099	1/1:84:1,83:1:36:83:2980:-264.65,-21.6908,0	1/1:103:1,102:1:36:102:3664:-326.138,-27.4095,0	0/1:197:94,103:94:3372:103:3687:-272.508,0,-243.192	1/1:93:0,93:0:0:93:3329:-299.454,-27.9958,0	1/1:48:0,48:0:0:48:1720:-155.012,-14.4494,0	0/1:101:57,44:57:2036:44:1580:-111.606,0,-152.711	0/1:128:51,76:51:1836:76:2717:-205.794,0,-126.378	0/1:39:26,13:26:936:13:468:-30.7076,0,-72.7053	0/1:64:28,34:28:1004:34:1215:-90.5882,0,-71.4975	0/1:59:24,35:24:864:35:1260:-95.8077,0,-60.2663	0/1:23:13,10:13:468:10:360:-25.8115,0,-35.4209	0/1:65:34,31:34:1215:31:1104:-80.0782,0,-90.0112	0/1:54:31,23:31:1112:23:824:-58.1287,0,-83.5589	1/1:136:0,136:0:0:136:4883:-438.95,-40.9401,0	1/1:86:0,86:0:0:86:3092:-278.312,-25.8886,0
chr02	25753150	.	G	A	32489.4	PASS	AB=0.527407;ABP=34.7907;AC=57;AF=0.303191;AN=188;AO=2584;CIGAR=1X;DP=8504;DPB=8504;DPRA=1.09621;EPP=5614.1;EPPR=12853.8;GTI=1;LEN=1;MEANALT=1.01639;MQM=35.2651;MQMR=59.9676;NS=94;NUMALT=1;ODDS=1.33416;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92239;QR=211453;RO=5918;RPL=2584;RPP=5614.1;RPPR=12853.8;RPR=0;RUN=1;SAF=0;SAP=5614.1;SAR=2584;SRF=0;SRP=12853.8;SRR=5918;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.374	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.701	0/1:135:64,71:64:2269:71:2552:-157.652,0,-163.832	0/1:282:135,147:135:4798:147:5231:-307.379,0,-347.086	1/1:8:0,8:0:0:8:284:-22.7633,-2.40824,0	0/1:15:9,6:9:324:6:212:-12.6405,0,-24.9904	0/1:110:51,59:51:1813:59:2120:-126.455,0,-130.336	0/1:143:68,75:68:2417:75:2670:-164.6,0,-174.738	0/1:97:55,42:55:1964:42:1504:-88.0294,0,-147.835	0/1:48:29,19:29:1044:19:684:-36.8195,0,-79.8254	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:95:64,31:64:2280:31:1112:-57.771,0,-176.864	0/1:48:28,20:28:1000:20:720:-40.8377,0,-75.8659	0/1:59:26,33:26:917:33:1153:-69.6629,0,-65.0389	0/1:84:43,41:43:1548:41:1476:-85.0013,0,-114.327	0/1:37:16,21:16:572:21:756:-45.6297,0,-40.6753	0/0:22:21,1:21:744:1:36:0,-3.56812,-64.2298	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:183:102,81:102:3645:81:2904:-162.779,0,-273.165	0/0:128:128,0:128:4565:0:0:0,-38.5318,-411.016	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.059	0/1:173:70,103:70:2492:103:3658:-222.269,0,-172.456	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/0:329:328,1:328:11717:1:36:0,-95.4406,-1050.8	0/0:252:252,0:252:9015:0:0:0,-75.8596,-811.329	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:210:106,103:106:3785:103:3685:-267.298,0,-277.634	0/1:156:61,95:61:2184:95:3397:-208.877,0,-149.865	0/1:199:81,118:81:2881:118:4202:-256.472,0,-199.621	0/1:10:5,5:5:172:5:180:-11.2693,0,-12.8077	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:15:5,10:5:180:10:360:-23.2808,0,-12.0366	0/1:192:96,96:96:3448:96:3426:-249.64,0,-252.734	0/1:181:70,111:70:2504:111:3953:-242.713,0,-171.126	0/1:35:20,15:20:712:15:528:-30.5829,0,-53.8706	0/1:2:1,1:1:36:1:36:-2.37869,0,-2.99621	0/0:124:124,0:124:4431:0:0:0,-37.3277,-398.917	0/1:31:11,20:11:392:20:720:-45.2453,0,-26.2881	0/1:95:53,42:53:1892:42:1504:-84.1965,0,-141.916	0/1:43:24,19:24:845:19:680:-38.7619,0,-63.4228	0/1:45:25,20:25:900:20:720:-40.806,0,-67.7747	0/0:153:152,0:152:5456:0:0:0,-45.7566,-490.956	0/1:119:52,67:52:1849:67:2373:-147.941,0,-130.865	0/1:143:61,82:61:2164:82:2914:-176.996,0,-151.935	0/1:88:41,47:41:1468:47:1650:-98.4231,0,-105.925	0/0:116:116,0:116:4152:0:0:0,-34.9195,-373.862	0/1:105:41,64:41:1472:64:2289:-173.058,0,-101.168	0/1:24:9,15:9:324:15:536:-33.1916,0,-22.2811	0/0:80:79,1:79:2828:1:36:0,-20.4841,-251.161	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:10:8,2:8:284:2:72:-2.79332,0,-22.8931	0/1:195:99,96:99:3552:96:3425:-198.826,0,-261.187	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/1:22:8,14:8:288:14:504:-38.5152,0,-19.6447	0/1:73:43,30:43:1544:30:1046:-57.5814,0,-117.278	0/0:116:116,0:116:4157:0:0:0,-34.9195,-374.311	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:221:221,0:221:7885:0:0:0,-66.5276,-709.678	0/0:175:174,1:174:6228:1:36:0,-49.6995,-557.003	0/1:38:26,12:26:932:12:432:-21.1181,0,-72.7597	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:209:206,3:206:7331:3:108:0,-54.5692,-651.494	0/1:180:45,135:45:1605:135:4818:-306.419,0,-90.5527	0/1:31:16,15:16:568:15:540:-31.2732,0,-42.1199	0/1:57:31,26:31:1097:26:932:-56.4483,0,-81.8793	0/1:52:27,25:27:972:25:900:-65.6675,0,-72.1443	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:190:190,0:190:6796:0:0:0,-57.1957,-611.621	0/1:54:30,24:30:1072:24:860:-50.3122,0,-80.5368	0/0:228:228,0:228:8144:0:0:0,-68.6348,-732.933	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/1:45:24,21:24:852:21:756:-45.407,0,-63.454	0/1:105:50,55:50:1788:55:1923:-118.766,0,-129.594	0/1:14:2,12:2:72:12:432:-29.08,0,-2.6223	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.956	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/1:259:92,167:92:3288:167:5985:-371.369,0,-218.173	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/1:51:30,21:30:1076:21:752:-41.7188,0,-81.8003	0/1:123:68,55:68:2427:55:1976:-110.697,0,-181.659	0/1:15:6,9:6:212:9:324:-20.5318,0,-14.9093	0/1:59:21,38:21:756:38:1356:-86.589,0,-50.6065	0/1:69:40,29:40:1440:29:1044:-59.7487,0,-109.127	0/1:33:19,14:19:676:14:504:-27.9216,0,-51.234	0/1:87:48,39:48:1716:39:1400:-78.1112,0,-128.536	0/1:84:36,48:36:1280:48:1709:-103.384,0,-90.2167	0/0:124:124,0:124:4394:0:0:0,-37.3277,-395.589	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916
chr02	25772422	.	CACT	GACT	100846	PASS	AB=0.5018;ABP=3.12755;AC=131;AF=0.696809;AN=188;AO=4952;CIGAR=1X3M;DP=7066;DPB=7066;DPRA=51.1812;EPP=10756.1;EPPR=4528.36;GTI=3;LEN=1;MEANALT=1.25;MQM=59.5228;MQMR=59.9194;NS=94;NUMALT=1;ODDS=0.730072;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176927;QR=73692;RO=2084;RPL=4952;RPP=10756.1;RPPR=4528.36;RPR=0;RUN=1;SAF=0;SAP=10756.1;SAR=4952;SRF=0;SRP=4528.36;SRR=2084;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:67:0,61:0:0:61:2152:-193.584,-18.3628,0	1/1:62:0,62:0:0:62:2228:-200.625,-18.6639,0	0/1:103:47,56:47:1681:56:2012:-150.262,0,-120.568	0/1:105:52,53:52:1852:53:1896:-139.132,0,-135.351	0/1:54:29,25:29:1031:25:892:-64.3394,0,-76.8478	0/1:25:15,10:15:533:10:360:-25.2186,0,-40.778	0/1:47:28,19:28:988:19:676:-47.018,0,-75.0854	0/1:162:57,102:57:2023:102:3616:-277.401,0,-134.121	0/1:116:68,48:68:2403:48:1700:-118.312,0,-181.607	0/1:101:58,42:58:2042:42:1504:-105.086,0,-153.589	0/1:43:19,23:19:662:23:828:-61.8412,0,-46.8998	0/1:77:35,42:35:1231:42:1512:-113.194,0,-87.9143	0/1:60:31,29:31:1099:29:1044:-76.1882,0,-81.1533	0/1:51:30,21:30:1069:21:747:-52.1698,0,-81.1564	0/1:65:30,34:30:1047:34:1224:-90.8397,0,-74.913	0/1:48:24,24:24:857:24:864:-63.6316,0,-63.0022	1/1:36:2,34:2:68:34:1220:-103.541,-4.37937,0	1/1:28:0,28:0:0:28:1004:-90.6549,-8.42884,0	1/1:22:0,22:0:0:22:792:-71.5798,-6.62266,0	0/1:98:43,55:43:1526:55:1953:-146.472,0,-108.132	1/1:127:0,127:0:0:127:4548:-409.367,-38.2308,0	1/1:99:0,99:0:0:99:3544:-318.921,-29.802,0	0/1:134:78,56:78:2748:56:1992:-139.055,0,-207.225	1/1:53:0,53:0:0:53:1892:-170.399,-15.9546,0	1/1:48:0,48:0:0:48:1728:-155.802,-14.4494,0	1/1:267:1,263:1:36:263:9365:-839.015,-76.2243,0	1/1:172:0,170:0:0:170:6100:-548.58,-51.1751,0	1/1:36:0,36:0:0:36:1296:-116.934,-10.8371,0	0/1:252:133,119:133:4701:119:4260:-307.7,0,-347.228	0/1:119:55,64:55:1939:64:2300:-171.368,0,-138.963	0/1:86:39,47:39:1380:47:1676:-125.237,0,-98.6093	0/0:2:2,0:2:66:0:0:0,-0.60206,-6.26795	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	1/1:8:0,8:0:0:8:288:-26.2566,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:170:89,80:89:3157:80:2863:-206.439,0,-233.121	0/1:98:52,46:52:1817:46:1648:-119.014,0,-134.307	0/1:29:14,15:14:503:15:540:-40.2067,0,-36.8778	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:37:0,37:0:0:37:1305:-117.476,-11.1381,0	0/1:22:10,12:10:359:12:432:-32.5591,0,-26.031	0/1:211:91,118:91:3216:118:4186:-313.479,0,-226.386	0/1:58:21,37:21:736:37:1328:-102.362,0,-49.0829	0/1:50:27,23:27:964:23:815:-58.6177,0,-72.0256	1/1:99:0,96:0:0:96:3432:-308.393,-28.8989,0	0/1:132:65,67:65:2280:67:2400:-176.483,0,-165.723	0/1:171:79,92:79:2794:92:3280:-243.939,0,-200.225	0/1:69:31,38:31:1094:38:1352:-101.042,0,-77.9988	1/1:67:0,67:0:0:67:2373:-213.822,-20.169,0	0/1:56:36,20:36:1275:20:716:-47.91,0,-98.1951	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:98:0,97:0:0:97:3471:-311.995,-29.1999,0	1/1:42:0,42:0:0:42:1504:-135.418,-12.6433,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:93:40,53:40:1404:53:1900:-143.25,0,-98.6592	1/1:19:1,18:1:36:18:648:-55.0521,-2.1213,0	0/1:7:3,4:3:103:4:140:-10.8374,0,-7.50239	0/1:16:11,5:11:393:5:180:-11.7356,0,-30.8944	0/1:73:23,50:23:810:50:1796:-139.856,0,-51.2455	1/1:78:0,78:0:0:78:2797:-251.887,-23.4803,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:137:0,136:0:0:136:4856:-436.776,-40.9401,0	1/1:197:3,193:3:108:193:6913:-612.087,-49.2566,0	0/1:39:19,20:19:680:20:712:-52.6665,0,-49.7881	1/1:71:0,71:0:0:71:2529:-227.824,-21.3731,0	1/1:109:5,104:5:174:104:3706:-317.732,-16.8108,0	0/1:130:82,48:82:2914:48:1704:-114.509,0,-223.355	0/1:27:13,14:13:461:14:504:-37.5694,0,-33.6977	0/1:40:26,14:26:929:14:493:-32.3887,0,-71.8841	0/1:31:19,12:19:665:12:432:-29.8877,0,-50.8426	1/1:9:0,9:0:0:9:298:-27.0604,-2.70927,0	1/1:86:0,86:0:0:86:3067:-276.231,-25.8886,0	0/1:77:31,46:31:1092:46:1634:-123.989,0,-75.4094	1/1:142:0,142:0:0:142:5029:-452.316,-42.7463,0	1/1:132:0,131:0:0:131:4677:-420.734,-39.4349,0	0/1:96:41,55:41:1456:55:1964:-148.129,0,-102.436	0/1:103:54,49:54:1900:49:1760:-127.568,0,-140.271	1/1:6:0,5:0:0:5:180:-16.1925,-1.50515,0	1/1:81:0,81:0:0:81:2896:-260.86,-24.3834,0	1/1:105:0,104:0:0:104:3708:-333.56,-31.3071,0	0/1:143:74,69:74:2625:69:2469:-179.402,0,-193.45	1/1:64:0,64:0:0:64:2299:-206.894,-19.2659,0	1/1:62:0,62:0:0:62:2224:-200.417,-18.6639,0	0/1:63:30,33:30:1062:33:1184:-87.881,0,-76.9257	0/1:119:56,63:56:1966:63:2264:-168.194,0,-141.392	0/1:19:12,7:12:431:7:248:-16.9446,0,-33.4111	0/1:66:29,37:29:1026:37:1323:-99.4848,0,-72.7847	0/1:61:29,32:29:1030:32:1148:-85.0907,0,-74.6491	0/1:22:7,15:7:252:15:531:-41.3409,0,-16.4063	0/1:71:37,34:37:1309:34:1216:-88.3719,0,-96.7388	0/1:51:40,11:40:1401:11:396:-20.6302,0,-111.032	1/1:138:0,138:0:0:138:4944:-445.046,-41.5421,0	1/1:75:2,72:2:72:72:2588:-226.257,-15.7992,0
chr02	25796873	.	T	C	198674	PASS	AB=0.485356;ABP=17.1289;AC=133;AF=0.707447;AN=188;AO=9684;CIGAR=1X;DP=13603;DPB=13603;DPRA=146.258;EPP=21022.9;EPPR=8463.09;GTI=1;LEN=1;MEANALT=1.11828;MQM=59.9427;MQMR=59.9434;NS=94;NUMALT=1;ODDS=1.39826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=344214;QR=138844;RO=3908;RPL=0;RPP=21031.5;RPPR=8463.09;RPR=9684;RUN=1;SAF=9683;SAP=21022.9;SAR=1;SRF=3908;SRP=8489.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:67:0,67:0:0:67:2357:-212.282,-20.169,0	1/1:128:0,128:0:0:128:4553:-409.934,-38.5318,0	0/1:226:120,105:120:4268:105:3724:-267.271,0,-316.202	0/1:469:220,249:220:7763:249:8829:-653.417,0,-557.421	0/1:128:77,51:77:2733:51:1816:-125.19,0,-207.68	0/1:131:63,68:63:2214:68:2417:-178.351,0,-160.087	0/1:227:101,126:101:3588:126:4487:-335.665,0,-254.791	0/1:203:124,79:124:4399:79:2800:-191.121,0,-334.972	0/1:143:66,77:66:2307:77:2746:-204.322,0,-164.832	0/1:164:86,78:86:3041:78:2757:-198.862,0,-224.552	0/1:40:21,19:21:752:19:676:-49.1268,0,-55.9651	0/1:86:38,47:38:1355:47:1651:-123.085,0,-96.4582	0/1:70:38,32:38:1368:32:1136:-81.4768,0,-102.349	0/1:73:37,36:37:1328:36:1292:-94.6086,0,-97.847	0/1:87:54,33:54:1936:33:1172:-79.5979,0,-148.324	0/1:58:31,26:31:1108:26:915:-65.1857,0,-82.5466	1/1:88:0,88:0:0:88:3124:-281.387,-26.4906,0	1/1:61:0,61:0:0:61:2162:-194.846,-18.3628,0	1/1:50:1,49:1:36:49:1760:-155.075,-11.4532,0	0/1:338:175,162:175:6218:162:5759:-416.623,0,-457.909	1/1:209:0,209:0:0:209:7400:-666.055,-62.9153,0	1/1:331:0,331:0:0:331:11771:-1059.26,-99.6409,0	0/1:245:132,113:132:4650:113:4019:-288.146,0,-344.898	1/1:192:1,191:1:36:191:6799:-608.317,-54.1995,0	1/1:132:1,131:1:21:131:4633:-415.036,-37.636,0	1/1:504:3,500:3:108:500:17746:-1586.73,-141.59,0	1/1:261:0,260:0:0:260:9226:-829.958,-78.2678,0	1/1:37:0,37:0:0:37:1308:-118.02,-11.1381,0	0/1:467:260,207:260:9283:207:7380:-523.668,0,-694.854	0/1:194:102,92:102:3602:92:3278:-236.784,0,-265.987	0/1:214:98,115:98:3451:115:4088:-303.778,0,-246.471	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:11:0,11:0:0:11:384:-34.8933,-3.31133,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:189:97,92:97:3472:92:3292:-239.605,0,-255.797	0/1:309:181,128:181:6391:128:4503:-312.423,0,-482.262	0/1:67:39,28:39:1385:28:999:-70.0555,0,-104.778	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:258:1,256:1:36:256:9085:-814.037,-74.1263,0	0/1:38:15,23:15:536:23:812:-61.9618,0,-37.1357	0/1:302:166,136:166:5902:136:4863:-346.912,0,-440.367	0/1:112:54,58:54:1917:58:2064:-152.316,0,-139.09	0/1:66:29,37:29:1044:37:1312:-97.7355,0,-74.4068	1/1:236:1,235:1:36:235:8355:-748.36,-67.4448,0	0/1:147:71,76:71:2490:76:2698:-198.813,0,-180.013	0/1:243:132,111:132:4705:111:3950:-282.542,0,-350.448	0/1:148:66,82:66:2372:82:2920:-218.484,0,-169.185	1/1:269:0,269:0:0:269:9582:-862.296,-80.9771,0	0/1:301:145,156:145:5184:156:5546:-408.23,0,-376.091	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:185:0,185:0:0:185:6579:-591.965,-55.6906,0	1/1:93:0,93:0:0:93:3311:-298.209,-27.9958,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:215:112,103:112:3982:103:3651:-264.074,0,-293.653	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:18:14,4:14:500:4:140:-7.52604,0,-39.9094	0/1:109:62,47:62:2179:47:1663:-117.13,0,-163.559	1/1:120:0,119:0:0:119:4248:-382.139,-35.8226,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:370:1,369:1:36:369:13115:-1176.57,-107.783,0	1/1:262:1,261:1:21:261:9303:-835.138,-76.7699,0	0/1:97:53,44:53:1900:44:1553:-110.86,0,-142.078	1/1:168:0,168:0:0:168:5985:-538.756,-50.573,0	1/1:432:1,431:1:36:431:15330:-1375.83,-126.447,0	0/1:95:56,39:56:1973:39:1383:-96.1702,0,-149.241	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:81:33,48:33:1161:48:1680:-127.1,0,-80.4113	0/1:91:46,45:46:1640:45:1608:-117.616,0,-120.388	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:182:0,182:0:0:182:6484:-583.644,-54.7875,0	0/1:83:52,31:52:1864:31:1112:-75.4059,0,-143.054	1/1:190:0,190:0:0:190:6804:-612.419,-57.1957,0	1/1:284:0,283:0:0:283:10108:-909.209,-85.1915,0	0/1:209:91,117:91:3211:117:4139:-309.724,0,-226.237	0/1:146:78,68:78:2796:68:2406:-172.846,0,-207.93	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	1/1:160:0,160:0:0:160:5675:-510.87,-48.1648,0	1/1:95:0,95:0:0:95:3383:-304.685,-28.5979,0	0/1:269:121,148:121:4313:148:5296:-395.798,0,-307.369	1/1:111:0,111:0:0:111:3927:-353.592,-33.4143,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:111:70,41:70:2481:41:1458:-98.101,0,-190.128	0/1:157:70,87:70:2516:87:3099:-231.865,0,-179.43	0/1:54:35,19:35:1252:19:684:-45.6347,0,-96.7295	0/1:79:29,50:29:1040:50:1792:-137.778,0,-70.1317	0/1:73:37,36:37:1320:36:1272:-92.8071,0,-97.1235	0/1:32:13,19:13:464:19:673:-51.263,0,-32.4645	0/1:75:26,49:26:936:49:1744:-134.667,0,-61.9822	0/1:79:50,29:50:1796:29:1019:-68.2399,0,-138.141	1/1:279:1,278:1:36:278:9805:-878.324,-80.3891,0	1/1:103:0,103:0:0:103:3667:-330.149,-31.0061,0
chr02	25796908	.	T	C	62544.7	PASS	AB=0.505369;ABP=4.92242;AC=55;AF=0.292553;AN=188;AO=3877;CIGAR=1X;DP=13858;DPB=13858;DPRA=1.34784;EPP=8421.81;EPPR=21639.6;GTI=1;LEN=1;MEANALT=1.13043;MQM=59.9376;MQMR=59.9491;NS=94;NUMALT=1;ODDS=0.00350975;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135098;QR=354857;RO=9972;RPL=3877;RPP=8421.81;RPPR=21648.2;RPR=0;RUN=1;SAF=3877;SAP=8421.81;SAR=0;SRF=9971;SRP=21648.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:69:69,0:69:2435:0:0:0,-20.7711,-219.404	0/0:134:134,0:134:4768:0:0:0,-40.338,-429.277	0/1:231:108,122:108:3872:122:4282:-315.961,0,-279.078	0/1:464:243,220:243:8624:220:7619:-546.011,0,-636.419	0/1:126:50,76:50:1772:76:2668:-202.436,0,-121.831	0/1:129:67,62:67:2400:62:2143:-154.298,0,-177.424	0/1:228:131,97:131:4678:97:3369:-234.79,0,-352.543	0/1:200:80,120:80:2848:120:4219:-319.686,0,-196.081	0/1:145:78,67:78:2774:67:2373:-170.17,0,-206.048	0/1:159:72,87:72:2563:87:3017:-223.897,0,-182.916	0/1:47:23,24:23:815:24:852:-62.852,0,-59.5224	0/1:84:46,38:46:1635:38:1293:-91.3731,0,-122.151	0/1:73:32,41:32:1144:41:1426:-106.659,0,-81.2942	0/1:75:36,39:36:1280:39:1359:-100.03,0,-92.926	0/1:87:34,53:34:1201:53:1875:-142.836,0,-82.204	0/1:56:26,30:26:914:30:1051:-78.0426,0,-65.717	0/0:87:86,1:86:3050:1:36:0,-22.5913,-271.132	0/0:64:64,0:64:2267:0:0:0,-19.2659,-204.293	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.737	0/1:344:170,173:170:6078:173:6038:-439.917,0,-443.139	0/0:217:216,1:216:7691:1:27:0,-62.6237,-689.527	0/0:334:334,0:334:11926:0:0:0,-100.544,-1073.19	0/1:243:114,128:114:4003:128:4456:-327.99,0,-287.247	0/0:197:196,1:196:6954:1:36:0,-55.7046,-621.959	0/0:137:136,1:136:4831:1:36:0,-37.6428,-431.346	0/0:517:517,0:517:18436:0:0:0,-155.633,-1658.81	0/0:275:273,2:273:9715:2:68:0,-76.3255,-867.844	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.939	0/1:473:216,256:216:7706:256:8954:-663.448,0,-551.166	0/1:194:93,100:93:3315:100:3489:-255.762,0,-239.981	0/1:224:121,102:121:4276:102:3551:-252.309,0,-317.529	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8032	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	0/1:194:94,100:94:3354:100:3444:-251.773,0,-243.676	0/1:308:132,176:132:4709:176:6142:-460.164,0,-331.252	0/1:69:30,39:30:1072:39:1357:-101.653,0,-76.0214	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:266:265,1:265:9394:1:36:0,-76.4757,-841.829	0/1:41:25,16:25:888:16:567:-39.0184,0,-67.8968	0/1:298:140,158:140:5007:158:5495:-404.97,0,-361.062	0/1:116:62,54:62:2187:54:1861:-132.843,0,-162.174	0/1:69:39,30:39:1362:30:1052:-74.0262,0,-102.105	0/0:237:235,2:235:8376:2:72:0,-64.5074,-747.006	0/1:143:76,67:76:2674:67:2361:-169.697,0,-197.857	0/1:250:118,132:118:4207:132:4530:-332.614,0,-303.552	0/1:156:87,69:87:3090:69:2426:-171.633,0,-231.367	0/0:279:277,1:277:9882:1:36:0,-80.3928,-885.78	0/1:302:156,146:156:5583:146:5118:-369.855,0,-411.681	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:193:193,0:193:6863:0:0:0,-58.0988,-617.512	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.48	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:216:105,111:105:3727:111:3888:-284.9,0,-270.607	0/0:65:65,0:65:2288:0:0:0,-19.5669,-206.18	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:17:4,13:4:144:13:449:-35.62,0,-8.19611	0/1:108:50,58:50:1762:58:2005:-148.208,0,-126.217	0/0:125:125,0:125:4435:0:0:0,-37.6287,-399.321	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:390:390,0:390:13832:0:0:0,-117.402,-1244.67	0/0:267:266,1:266:9487:1:21:0,-78.2751,-851.688	0/1:100:47,53:47:1692:53:1835:-135.324,0,-122.459	0/0:170:170,0:170:6015:0:0:0,-51.1751,-541.455	0/0:458:457,1:457:16332:1:36:0,-134.273,-1465.95	0/1:91:40,51:40:1408:51:1815:-136.235,0,-99.6207	0/1:8:3,5:3:104:5:165:-12.7654,0,-7.29457	0/1:80:48,32:48:1687:32:1131:-78.0154,0,-128.03	0/1:88:45,43:45:1616:43:1476:-106.53,0,-119.239	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:189:188,1:188:6653:1:36:0,-53.2964,-595.182	0/1:87:33,54:33:1180:54:1877:-143.003,0,-80.3184	0/0:189:189,0:189:6748:0:0:0,-56.8947,-607.394	0/0:285:285,0:285:10207:0:0:0,-85.7935,-918.469	0/1:211:123,88:123:4379:88:3105:-216.161,0,-330.766	0/1:147:67,80:67:2380:80:2819:-209.697,0,-170.207	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:166:165,1:165:5878:1:36:0,-46.3727,-525.523	0/0:104:104,0:104:3673:0:0:0,-31.3071,-330.776	0/1:268:150,118:150:5347:118:4152:-293.189,0,-400.681	0/0:115:114,1:114:4071:1:36:0,-31.0202,-362.914	0/0:68:68,0:68:2391:0:0:0,-20.47,-215.443	0/1:110:42,68:42:1495:68:2301:-174.234,0,-101.731	0/1:164:91,73:91:3229:73:2499:-175.794,0,-241.452	0/1:55:20,35:20:711:35:1227:-94.1764,0,-47.759	0/1:84:54,30:54:1944:30:988:-63.9281,0,-149.946	0/1:71:36,35:36:1292:35:1226:-89.2691,0,-95.2106	0/1:32:19,13:19:680:13:444:-30.6539,0,-51.8962	0/1:78:52,26:52:1839:26:899:-57.7428,0,-142.309	0/1:79:32,47:32:1118:47:1654:-125.365,0,-77.1446	0/0:291:289,1:289:10327:1:36:0,-83.9704,-925.837	0/0:104:103,1:103:3639:1:36:0,-27.7088,-324.029
chr02	25796955	.	G	T	51543.6	PASS	AB=0.499508;ABP=3.02312;AC=56;AF=0.297872;AN=188;AO=3058;CIGAR=1X;DP=10627;DPB=10627;DPRA=1.12437;EPP=6634.69;EPPR=16395.5;GTI=0;LEN=1;MEANALT=1.04762;MQM=59.9964;MQMR=60;NS=94;NUMALT=1;ODDS=11.115;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109333;QR=270135;RO=7565;RPL=1;RPP=6634.69;RPPR=16395.5;RPR=3057;RUN=1;SAF=0;SAP=6643.37;SAR=3058;SRF=0;SRP=16430.2;SRR=7565;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1589:0:0:0,-13.5463,-143.298	0/0:263:263,0:263:9424:0:0:0,-79.1709,-848.117	0/1:128:63,65:63:2252:65:2324:-170.888,0,-164.411	0/1:142:67,75:67:2412:75:2696:-200.138,0,-174.59	0/1:74:36,38:36:1296:38:1364:-100.784,0,-94.6677	0/1:79:41,38:41:1455:38:1360:-98.9192,0,-107.464	0/1:154:70,84:70:2495:84:2987:-222.703,0,-178.444	0/1:186:110,76:110:3943:76:2714:-188.511,0,-299.069	0/1:92:57,35:57:2027:35:1260:-86.0107,0,-155.007	0/1:122:58,64:58:2071:64:2296:-170.175,0,-149.934	0/1:87:38,49:38:1360:49:1756:-132.117,0,-96.511	0/1:106:61,45:61:2188:45:1612:-113.461,0,-165.277	0/1:74:47,27:47:1688:27:968:-65.1611,0,-129.931	0/1:92:55,37:55:1941:37:1316:-91.047,0,-147.269	0/1:66:32,33:32:1152:33:1184:-86.9416,0,-84.0634	0/1:131:68,63:68:2413:63:2263:-164.497,0,-177.99	0/0:101:100,1:100:3576:1:36:0,-26.8058,-318.45	0/0:87:87,0:87:3089:0:0:0,-26.1896,-278.238	0/0:51:51,0:51:1805:0:0:0,-15.3525,-162.73	0/1:122:68,54:68:2425:54:1928:-137.071,0,-181.779	0/0:185:185,0:185:6611:0:0:0,-55.6905,-595.068	0/0:117:117,0:117:4189:0:0:0,-35.2205,-377.19	0/1:64:32,32:32:1130:32:1147:-84.2737,0,-82.741	0/0:133:133,0:133:4742:0:0:0,-40.037,-426.937	0/0:111:111,0:111:3968:0:0:0,-33.4143,-357.312	0/0:296:295,1:295:10533:1:36:0,-85.5066,-944.286	0/0:218:218,0:218:7794:0:0:0,-65.6245,-701.49	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:249:118,130:118:4236:130:4644:-343.106,0,-306.403	0/1:144:69,75:69:2476:75:2696:-199.535,0,-179.745	0/1:134:87,47:87:3116:47:1680:-111.149,0,-240.329	0/1:20:7,13:7:252:13:464:-36.0769,0,-17.0084	0/0:34:33,0:33:1171:0:0:0,-9.93399,-105.337	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:25:8,17:8:288:17:608:-47.5263,0,-18.7417	0/1:243:119,124:119:4233:124:4440:-326.621,0,-307.998	0/1:245:146,99:146:5214:99:3544:-245.416,0,-395.646	0/1:94:48,46:48:1716:46:1644:-119.952,0,-126.429	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:145:145,0:145:5197:0:0:0,-43.6493,-467.866	0/1:50:25,25:25:896:25:896:-65.9089,0,-65.9089	0/1:160:79,81:79:2817:81:2891:-212.261,0,-205.603	0/1:88:49,39:49:1737:39:1385:-98.4562,0,-130.122	0/1:65:36,29:36:1287:29:1040:-74.3474,0,-96.5658	0/0:101:101,0:101:3605:0:0:0,-30.404,-324.655	0/1:97:55,41:55:1968:41:1472:-103.517,0,-148.136	0/1:177:94,83:94:3351:83:2968:-214.071,0,-248.525	0/1:150:78,72:78:2764:72:2583:-187.564,0,-203.846	0/0:123:123,0:123:4394:0:0:0,-37.0267,-395.633	0/1:141:58,83:58:2076:83:2972:-225.268,0,-144.665	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/0:237:237,0:237:8445:0:0:0,-71.3441,-760.054	0/0:90:90,0:90:3162:0:0:0,-27.0927,-284.805	0/1:57:22,35:22:788:35:1256:-96.1866,0,-54.0861	0/1:100:50,50:50:1781:50:1764:-128.94,0,-130.468	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:27:10,17:10:360:17:604:-46.5628,0,-24.6165	0/1:81:35,46:35:1256:46:1648:-124.225,0,-88.9619	0/0:179:178,1:178:6347:1:36:0,-50.2861,-567.723	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:177:177,0:177:6316:0:0:0,-53.2823,-568.532	0/0:309:307,2:307:10990:2:72:0,-86.1815,-982.157	0/1:134:40,94:40:1428:94:3353:-261.648,0,-88.4795	0/0:81:81,0:81:2870:0:0:0,-24.3834,-258.538	0/0:174:170,4:170:6080:4:144:0,-39.0656,-533.989	0/1:254:97,157:97:3472:157:5581:-425.955,0,-236.23	0/1:32:17,15:17:608:15:540:-39.3036,0,-45.4191	0/1:104:52,52:52:1855:52:1853:-135.741,0,-135.922	0/1:110:61,49:61:2179:49:1755:-125.121,0,-163.262	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:149:149,0:149:5324:0:0:0,-44.8535,-479.295	0/1:38:15,23:15:540:23:824:-63.0442,0,-37.4974	0/0:243:243,0:243:8689:0:0:0,-73.1503,-781.999	0/0:111:111,0:111:3939:0:0:0,-33.4143,-354.702	0/1:155:75,80:75:2672:80:2860:-210.978,0,-194.067	0/1:121:56,65:56:1975:65:2315:-172.186,0,-141.597	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/0:104:104,0:104:3699:0:0:0,-31.3071,-333.111	0/1:216:104,112:104:3723:112:3997:-294.897,0,-270.248	0/0:142:140,2:140:5020:2:72:0,-35.9095,-445.109	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/1:78:40,38:40:1436:38:1362:-99.4001,0,-106.057	0/1:181:90,91:90:3214:91:3266:-239.673,0,-234.995	0/1:45:22,23:22:780:23:820:-60.5762,0,-56.9767	0/1:103:49,54:49:1751:54:1917:-141.801,0,-126.867	0/1:98:52,46:52:1855:46:1644:-118.748,0,-137.728	0/1:69:42,27:42:1504:27:968:-66.6663,0,-114.884	0/1:200:106,94:106:3796:94:3368:-243.13,0,-281.632	0/1:60:20,40:20:716:40:1424:-110.396,0,-46.7059	0/0:93:92,1:92:3267:1:36:0,-24.3975,-290.651	0/0:108:108,0:108:3860:0:0:0,-32.5112,-347.596
chr02	25804393	.	CACT	AACA,AACT	198355	PASS	AB=0.458495,0.537285;ABP=88.0911,71.6664;AC=129,55;AF=0.701087,0.298913;AN=184;AO=6275,3071;CIGAR=1X2M1X,1X3M;DP=9381;DPB=9381;DPRA=0,1.08414;EPP=13430,6550.55;EPPR=5.18177;GTI=2;LEN=4,1;MEANALT=2.08696,2.38806;MQM=59.9249,59.9583;MQMR=60;NS=92;NUMALT=2;ODDS=0.301045;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=221990,110170;QR=36;RO=1;RPL=23,14;RPP=13430,6550.55;RPPR=5.18177;RPR=6252,3057;RUN=1,1;SAF=6275,3071;SAP=13629,6671.6;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:90:0,89,1:0:0:89,1:3176,36:-285.705,-26.7917,0,-282.767,-23.4944,-282.466	1/1:91:0,90,0:0:0:90,0:3174,0:-285.524,-27.0927,0,-285.524,-27.0927,-285.524	1/2:209:0,126,83:0:0:126,83:4467,2960:-605.563,-241.646,-203.716,-364.273,0,-339.287	1/2:268:0,118,148:0:0:118,148:4121,5299:-767.371,-432.165,-396.643,-335.233,0,-290.681	1/2:60:0,17,43:0:0:17,43:606,1544:-175.703,-126.307,-121.189,-49.7536,0,-36.8093	1/2:13:0,8,5:0:0:8,5:286,180:-38.3654,-15.0469,-12.6387,-23.6773,0,-22.1722	1/2:98:0,40,57:0:0:40,57:1389,2052:-280.338,-167.427,-155.385,-112.904,0,-95.7458	1/2:144:0,82,61:0:0:82,61:2879,2196:-413.54,-179.232,-154.548,-234.353,0,-215.99	1/2:92:0,50,40:0:0:50,40:1782,1426:-261.515,-116.263,-101.211,-145.277,0,-133.236	1/2:93:0,32,59:0:0:32,59:1139,2120:-265.836,-173.006,-163.373,-92.8829,0,-75.1222	1/2:73:0,39,34:0:0:39,34:1376,1224:-212.273,-100.232,-88.4918,-112.397,0,-102.162	1/2:116:0,59,56:0:0:59,56:2096,2008:-334.409,-163.776,-146.015,-170.631,0,-153.773	1/2:85:0,49,36:0:0:49,36:1750,1284:-247.703,-105.026,-90.2759,-143.033,0,-132.196	1/2:67:0,32,35:0:0:32,35:1145,1260:-196.537,-103.169,-93.5365,-93.7265,0,-83.1904	1/2:96:0,52,44:0:0:52,44:1854,1572:-279.655,-128.525,-112.872,-151.486,0,-138.241	1/2:47:0,24,23:0:0:24,23:850,824:-136.799,-67.5596,-60.3349,-69.5955,0,-62.6718	1/1:33:0,33,0:0:0:33,0:1161,0:-104.795,-9.93399,0,-104.795,-9.93399,-104.795	1/1:27:0,27,0:0:0:27,0:969,0:-87.5278,-8.12781,0,-87.5278,-8.12781,-87.5278	1/1:38:0,37,0:0:0:37,0:1305,0:-117.4,-11.1381,0,-117.4,-11.1381,-117.4	1/2:271:0,107,164:0:0:107,164:3800,5900:-791.368,-481.736,-449.526,-309.989,0,-260.62	1/1:135:0,134,0:0:0:134,0:4736,0:-426.047,-40.338,0,-426.047,-40.338,-426.047	1/1:65:0,65,0:0:0:65,0:2292,0:-206.54,-19.567,0,-206.54,-19.567,-206.54	1/2:149:0,63,85:0:0:63,85:2209,3048:-428.403,-248.648,-229.683,-179.798,0,-154.21	1/1:70:0,70,0:0:0:70,0:2494,0:-224.714,-21.0721,0,-224.714,-21.0721,-224.714	1/1:105:0,103,2:0:0:103,2:3655,72:-328.797,-31.0061,0,-322.922,-24.7714,-322.32	1/1:308:0,307,0:0:0:307,0:10787,0:-970.368,-92.4162,0,-970.368,-92.4162,-970.368	1/1:357:0,356,0:0:0:356,0:12617,0:-1134.64,-107.167,0,-1134.64,-107.167,-1134.64	1/1:37:0,36,1:0:0:36,1:1284,34:-115.523,-10.8371,0,-112.769,-7.74243,-112.467	1/2:286:0,131,155:0:0:131,155:4639,5551:-830.938,-453.053,-413.618,-378.241,0,-331.581	1/2:102:0,39,63:0:0:39,63:1379,2252:-296.291,-183.978,-172.238,-112.667,0,-93.7025	1/2:130:0,66,62:0:0:66,62:2329,2232:-371.751,-182.115,-162.247,-189.632,0,-170.969	.:.:.:.:.:.:.:.	1/1:22:0,22,0:0:0:22,0:769,0:-69.5296,-6.62266,0,-69.5296,-6.62266,-69.5296	1/1:2:0,1,0:0:0:1,0:36,0:-3.24343,-0.30103,0,-3.24343,-0.30103,-3.24343	1/1:10:0,10,0:0:0:10,0:345,0:-31.3824,-3.0103,0,-31.3824,-3.0103,-31.3824	1/2:7:0,3,4:0:0:3,4:107,144:-20.8306,-12.1095,-11.2064,-9.07908,0,-7.87496	1/2:189:0,99,89:0:0:99,89:3519,3200:-547.832,-261.071,-231.269,-286.759,0,-259.968	1/2:83:0,37,45:0:0:37,45:1297,1620:-237.822,-132.291,-121.153,-105.632,0,-92.0854	1/2:51:0,23,28:0:0:23,28:822,1008:-149.624,-82.6029,-75.6792,-67.3795,0,-58.9507	.:.:.:.:.:.:.:.	1/1:87:0,87,0:0:0:87,0:3082,0:-277.608,-26.1896,0,-277.608,-26.1896,-277.608	1/2:28:0,18,10:0:0:18,10:646,360:-82.4274,-29.734,-24.3155,-53.0529,0,-50.0426	1/2:209:0,96,112:0:0:96,112:3407,4016:-605.154,-327.563,-298.664,-277.598,0,-243.882	1/2:74:0,37,37:0:0:37,37:1318,1310:-214.404,-106.975,-95.8373,-107.783,0,-96.645	1/2:75:0,44,31:0:0:44,31:1569,1116:-219.317,-91.4198,-78.1744,-128.256,0,-118.924	1/1:104:0,104,0:0:0:104,0:3662,0:-329.785,-31.3071,0,-329.785,-31.3071,-329.785	1/2:172:0,81,90:0:0:81,90:2869,3221:-496.516,-262.806,-238.423,-233.853,0,-206.761	1/2:227:0,121,106:0:0:121,106:4247,3797:-655.62,-310.014,-273.59,-345.96,0,-314.051	1/2:137:0,69,68:0:0:69,68:2439,2448:-398.736,-200.104,-179.333,-198.988,0,-178.518	1/1:119:0,117,1:0:0:117,1:4170,36:-375.152,-35.2205,0,-372.215,-32.2532,-371.914	1/2:147:0,59,88:0:0:59,88:2098,3152:-428.387,-257.414,-239.653,-171.329,0,-144.839	1/2:9:0,5,3:0:0:5,3:168,108:-22.4084,-8.81225,-7.3071,-13.5895,0,-12.6864	1/1:154:0,153,1:0:0:153,1:5408,36:-486.488,-46.0576,0,-483.551,-42.7603,-483.25	1/1:66:0,63,1:0:0:63,1:2237,36:-201.237,-18.9649,0,-198.3,-16.0258,-197.999	1/2:19:0,12,7:0:0:12,7:431,252:-56.0806,-20.9217,-17.3094,-35.5183,0,-33.4111	1/2:128:0,85,43:0:0:85,43:2988,1536:-368.8,-125.589,-100.001,-243.566,0,-230.622	1/1:63:0,60,2:0:0:60,2:2116,72:-190.347,-18.0618,0,-184.472,-12.187,-183.87	1/2:10:0,4,6:0:0:4,6:144,216: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chr02	25804423	.	T	G	137528	PASS	AB=0.526845;ABP=74.0107;AC=56;AF=0.297872;AN=188;AO=6000;CIGAR=1X;DP=18928;DPB=18928;DPRA=1.39839;EPP=13031.8;EPPR=28036.7;GTI=1;LEN=1;MEANALT=1.07246;MQM=59.9545;MQMR=59.9813;NS=94;NUMALT=1;ODDS=4.19618;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212453;QR=458634;RO=12918;RPL=2992;RPP=3.10295;RPPR=178.585;RPR=3008;RUN=1;SAF=2992;SAP=3.10295;SAR=3008;SRF=5946;SRP=179.962;SRR=6972;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:108:108,0:108:3824:0:0:0,-32.5112,-344.358	0/0:255:253,0:253:9044:0:0:0,-76.1606,-813.58	0/1:311:171,140:171:6087:140:4914:-348.794,0,-454.312	0/1:433:200,233:200:7143:233:8264:-613.342,0,-512.581	0/1:160:68,92:68:2416:92:3291:-248.245,0,-169.532	0/1:61:32,29:32:1144:29:1026:-74.2885,0,-84.9067	0/1:281:109,172:109:3855:172:6108:-465.233,0,-262.557	0/1:342:168,173:168:5968:173:6100:-446.093,0,-434.219	0/1:210:110,100:110:3910:100:3547:-256.221,0,-288.878	0/1:236:96,140:96:3401:140:4954:-374.969,0,-235.263	0/1:136:65,71:65:2294:71:2531:-187.102,0,-165.781	0/1:202:100,102:100:3514:102:3631:-266.189,0,-255.664	0/1:161:84,77:84:2955:77:2755:-199.725,0,-217.718	0/1:142:67,75:67:2375:75:2612:-192.576,0,-171.262	0/1:166:98,68:98:3473:68:2424:-168.443,0,-262.812	0/1:130:68,62:68:2409:62:2188:-158.05,0,-177.932	0/0:151:151,0:151:5355:0:0:0,-45.4555,-482.088	0/0:97:97,0:97:3444:0:0:0,-29.1999,-310.173	0/0:82:82,0:82:2882:0:0:0,-24.6845,-259.619	0/1:567:265,302:265:9458:302:10723:-794.297,0,-680.496	0/0:301:301,0:301:10703:0:0:0,-90.61,-963.176	0/0:132:132,0:132:4655:0:0:0,-39.736,-419.116	0/1:237:110,127:110:3931:127:4471:-331.217,0,-282.636	0/0:141:141,0:141:5060:0:0:0,-42.4452,-455.544	0/0:197:195,2:195:6912:2:72:0,-52.4662,-615.312	0/0:598:596,1:596:21182:1:36:0,-176.397,-1902.28	0/0:559:557,2:557:19799:2:68:0,-161.818,-1774.21	0/0:94:94,0:94:3325:0:0:0,-28.2968,-299.465	0/1:572:286,286:286:10188:286:10072:-734.232,0,-744.668	0/1:219:108,111:108:3858:111:3927:-287.699,0,-281.489	0/1:245:134,111:134:4771:111:3932:-280.318,0,-355.794	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:25:25,0:25:880:0:0:0,-7.52575,-79.5177	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0178	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:459:224,234:224:7944:234:8354:-613.623,0,-576.758	0/1:285:130,155:130:4648:155:5479:-407.431,0,-332.689	0/1:122:54,68:54:1932:68:2400:-179.525,0,-137.431	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:255:255,0:255:9052:0:0:0,-76.7626,-814.663	0/1:60:34,25:34:1198:25:883:-61.6671,0,-90.0036	0/1:284:131,153:131:4615:153:5401:-400.732,0,-330.024	0/1:200:103,97:103:3651:97:3449:-250.222,0,-268.588	0/1:179:94,85:94:3298:85:2937:-210.68,0,-243.156	0/0:222:222,0:222:7873:0:0:0,-66.8287,-708.598	0/1:275:133,142:133:4732:142:5021:-369.168,0,-343.256	0/1:390:217,173:217:7691:173:6127:-434.023,0,-574.825	0/1:239:114,125:114:4030:125:4434:-327.286,0,-290.946	0/0:262:260,2:260:9242:2:72:0,-72.0331,-824.916	0/1:225:84,141:84:2992:141:4978:-380.438,0,-201.781	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:270:269,1:269:9527:1:36:0,-77.6798,-853.788	0/0:95:94,1:94:3363:1:36:0,-24.9996,-299.288	0/1:35:20,15:20:716:15:540:-38.4005,0,-54.2317	0/1:224:138,86:138:4900:86:3071:-209.188,0,-373.723	0/0:115:114,1:114:4049:1:36:0,-31.0202,-360.998	0/1:9:4,5:4:135:5:176:-13.4757,0,-9.77324	0/1:24:13,11:13:460:11:396:-28.758,0,-34.5107	0/1:157:82,75:82:2892:75:2677:-193.913,0,-213.255	0/0:239:235,3:235:8265:3:83:0,-64.239,-736.098	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:299:299,0:299:10677:0:0:0,-90.008,-960.841	0/0:369:366,3:366:13022:3:104:0,-101.377,-1162.1	0/1:125:53,72:53:1879:72:2534:-190.681,0,-131.759	0/0:191:190,1:190:6720:1:36:0,-53.8985,-601.278	0/0:322:319,3:319:11388:3:108:0,-86.8565,-1014.72	0/1:291:68,223:68:2417:223:7928:-625.94,0,-130.185	0/1:109:48,61:48:1702:61:2174:-163.113,0,-120.648	0/1:78:34,44:34:1220:44:1533:-114.777,0,-86.6265	0/1:157:62,95:62:2216:95:3368:-256.074,0,-152.443	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/0:156:156,0:156:5520:0:0:0,-46.9607,-496.927	0/1:207:86,121:86:3042:121:4323:-326.927,0,-211.698	0/0:386:386,0:386:13626:0:0:0,-116.198,-1226.13	0/0:296:296,0:296:10583:0:0:0,-89.1049,-952.384	0/1:247:117,130:117:4143:130:4597:-339.542,0,-298.655	0/1:268:117,151:117:4161:151:5305:-396.893,0,-293.998	0/1:35:13,22:13:460:22:764:-58.5407,0,-31.1993	0/0:232:232,0:232:8257:0:0:0,-69.839,-743.138	0/0:250:249,0:249:8808:0:0:0,-74.9565,-792.443	0/1:402:184,218:184:6508:218:7717:-573.553,0,-464.795	0/0:206:204,0:204:7230:0:0:0,-61.4101,-650.434	0/0:127:127,0:127:4514:0:0:0,-38.2308,-406.43	0/1:180:96,84:96:3383:84:2999:-215.956,0,-250.498	0/1:361:174,187:174:6174:187:6619:-487.12,0,-447.089	0/1:79:40,39:40:1432:39:1377:-100.445,0,-105.396	0/1:132:70,62:70:2456:62:2176:-156.369,0,-181.556	0/1:184:82,102:82:2931:102:3635:-271.966,0,-208.635	0/1:91:42,49:42:1480:49:1723:-127.958,0,-106.101	0/1:182:91,91:91:3237:91:3218:-235.057,0,-236.763	0/1:206:56,150:56:1993:150:5335:-418.271,0,-117.63	0/0:236:235,1:235:8296:1:36:0,-67.4448,-743.057	0/0:2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chr02	25804444	.	CAG	CAA,TAA	210872	PASS	AB=0.485512,0.511119;ABP=13.8325,9.38424;AC=131,55;AF=0.704301,0.295699;AN=186;AO=6897,3046;CIGAR=2M1X,1X1M1X;DP=9969;DPB=9969;DPRA=0,1.3944;EPP=14858.3,6548.01;EPPR=9.52472;GTI=0;LEN=1,3;MEANALT=1.93548,2.3125;MQM=59.9942,59.9402;MQMR=60;NS=93;NUMALT=2;ODDS=1.51811;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=246203,107369;QR=108;RO=3;RPL=6883,3038;RPP=14858.3,6548.01;RPPR=9.52472;RPR=14,8;RUN=1,1;SAF=0,0;SAP=14979.7,6617.32;SAR=6897,3046;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22,0:0:0:22,0:779,0:-70.4321,-6.62266,0,-70.4321,-6.62266,-70.4321	1/1:166:0,165,1:0:0:165,1:5868,36:-527.874,-49.67,0,-524.936,-46.3727,-524.635	1/2:112:0,49,62:0:0:49,62:1739,2148:-316.411,-174.718,-159.967,-141.84,0,-123.176	1/2:168:0,83,85:0:0:83,85:2980,2973:-485.247,-242.155,-217.17,-243.446,0,-217.859	1/2:103:0,54,48:0:0:54,48:1906,1709:-294.641,-139.433,-123.177,-155.349,0,-140.899	1/2:48:0,24,24:0:0:24,24:835,853:-137.754,-69.8655,-62.6407,-68.2396,0,-61.0149	1/2:183:0,66,117:0:0:66,117:2372,4121:-529.371,-335.858,-315.99,-193.87,0,-158.649	1/2:209:0,97,112:0:0:97,112:3449,3981:-605.827,-324.76,-295.56,-281.423,0,-247.707	1/2:125:0,65,59:0:0:65,59:2328,2063:-357.675,-167.816,-148.249,-189.853,0,-172.092	1/2:143:0,61,82:0:0:61,82:2179,2842:-408.994,-231.334,-212.971,-178.013,0,-153.328	1/2:67:0,30,37:0:0:30,37:1072,1298:-193.389,-105.982,-96.9507,-87.7616,0,-76.6234	1/2:97:0,46,51:0:0:46,51:1640,1802:-280.794,-147.108,-133.261,-134.041,0,-118.689	1/2:80:0,36,44:0:0:36,44:1283,1566:-232.563,-127.984,-117.147,-104.935,0,-91.6894	1/2:80:0,39,41:0:0:39,41:1371,1432:-228.421,-116.824,-105.084,-111.948,0,-99.6054	1/2:70:0,46,24:0:0:46,24:1652,862:-205.44,-70.6776,-56.8302,-135.121,0,-127.896	1/2:85:0,43,41:0:0:43,41:1527,1452:-242.805,-118.38,-105.436,-124.526,0,-112.183	1/1:112:0,112,0:0:0:112,0:3992,0:-359.469,-33.7154,0,-359.469,-33.7154,-359.469	1/1:71:0,71,0:0:0:71,0:2544,0:-229.211,-21.3731,0,-229.211,-21.3731,-229.211	1/1:47:0,47,0:0:0:47,0:1679,0:-151.396,-14.1484,0,-151.396,-14.1484,-151.396	1/2:310:0,161,149:0:0:161,149:5762,5216:-894.601,-424.726,-376.26,-470.228,0,-425.375	1/1:176:0,175,0:0:0:175,0:6261,0:-563.332,-52.6803,0,-563.332,-52.6803,-563.332	1/1:69:0,69,0:0:0:69,0:2476,0:-223.093,-20.7711,0,-223.093,-20.7711,-223.093	1/2:93:0,48,44:0:0:48,44:1720,1537:-265.376,-125.092,-110.643,-140.355,0,-127.109	1/1:74:0,74,0:0:0:74,0:2639,0:-237.757,-22.2762,0,-237.757,-22.2762,-237.757	1/1:97:0,97,0:0:0:97,0:3461,0:-311.703,-29.1999,0,-311.703,-29.1999,-311.703	1/1:303:0,302,1:0:0:302,1:10777,36:-969.476,-90.9111,0,-966.538,-87.6138,-966.237	1/1:216:0,215,1:0:0:215,1:7663,36:-689.35,-64.7215,0,-686.412,-61.4242,-686.111	1/1:59:0,59,0:0:0:59,0:2103,0:-189.539,-17.7608,0,-189.539,-17.7608,-189.539	1/2:293:0,160,133:0:0:160,133:5714,4731:-851.772,-385.915,-337.75,-466.213,0,-426.176	1/2:121:0,70,51:0:0:70,51:2504,1807:-351.742,-147.558,-126.485,-204.541,0,-189.188	1/2:127:0,75,52:0:0:75,52:2672,1833:-367.39,-149.594,-127.017,-218.149,0,-202.495	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:8:0,3,5:0:0:3,5:108,170:-22.9486,-14.1288,-13.2257,-9.17208,0,-7.66693	1/2:285:0,129,153:0:0:129,153:4592,5436:-817.243,-442.986,-404.154,-374.314,0,-328.256	1/2:209:0,94,113:0:0:94,113:3324,3969:-593.803,-323.075,-294.778,-270.784,0,-236.768	1/2:74:0,32,42:0:0:32,42:1144,1490:-215.031,-121.75,-112.118,-93.6366,0,-80.9933	1/1:1:0,1,0:0:0:1,0:32,0:-3.19931,-0.30103,0,-3.19931,-0.30103,-3.19931	1/1:173:0,173,0:0:0:173,0:6169,0:-555.309,-52.0782,0,-555.309,-52.0782,-555.309	1/2:36:0,18,18:0:0:18,18:644,631:-104.214,-51.696,-46.2774,-52.8721,0,-47.4535	1/2:87:0,41,46:0:0:41,46:1463,1598:-249.529,-130.258,-117.916,-119.623,0,-105.776	1/2:132:0,68,64:0:0:68,64:2426,2257:-381.87,-184.1,-163.63,-198.125,0,-178.859	1/2:107:0,52,55:0:0:52,55:1849,1935:-308.55,-157.868,-142.214,-151.035,0,-134.479	1/1:118:0,118,0:0:0:118,0:4211,0:-379.171,-35.5215,0,-379.171,-35.5215,-379.171	1/2:108:0,56,52:0:0:56,52:2004,1834:-313.105,-149.684,-132.827,-163.776,0,-148.122	1/2:177:0,103,73:0:0:103,73:3692,2598:-512.973,-211.853,-180.847,-301.236,0,-279.261	1/2:113:0,54,59:0:0:54,59:1928,2061:-325.185,-167.997,-151.741,-157.541,0,-139.78	1/1:151:1,149,1:1:36:149,1:5323,36:-475.56,-41.9161,0,-472.923,-41.9161,-475.56	1/2:81:0,27,54:0:0:27,54:961,1899:-233.253,-154.929,-146.801,-78.6782,0,-62.4226	1/2:6:0,4,2:0:0:4,2:144,61:-16.9775,-5.19117,-3.98705,-12.1095,0,-11.5074	1/1:119:0,119,0:0:0:119,0:4267,0:-384.207,-35.8226,0,-384.207,-35.8226,-384.207	1/1:33:0,33,0:0:0:33,0:1179,0:-106.417,-9.93399,0,-106.417,-9.93399,-106.417	1/2:16:0,8,8:0:0:8,8:288,288:-47.3585,-23.8592,-21.4509,-23.8592,0,-21.4509	1/2:102:0,57,45:0:0:57,45:2048,1582:-296.201,-129.123,-111.964,-167.433,0,-153.887	1/1:54:0,54,0:0:0:54,0:1924,0:-173.437,-16.2556,0,-173.437,-16.2556,-173.437	.:.:.:.:.:.:.:.	1/2:12:0,7,5:0:0:7,5:252,180:-35.6088,-15.0469,-12.9397,-20.9217,0,-19.4166	1/2:81:0,47,34:0:0:47,34:1688,1189:-234.754,-97.0488,-82.9004,-138.059,0,-127.824	1/1:128:0,127,1:0:0:127,1:4560,36:-410.205,-38.2308,0,-407.267,-34.9336,-406.966	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:198:0,198,0:0:0:198,0:7074,0:-636.721,-59.6039,0,-636.721,-59.6039,-636.721	1/1:238:0,236,1:0:0:236,1:8453,36:-760.455,-71.0431,0,-757.518,-68.0607,-757.217	1/2:44:0,18,26:0:0:18,26:648,904:-126.724,-73.8452,-68.4266,-53.2333,0,-45.4066	1/1:101:0,101,0:0:0:101,0:3600,0:-324.205,-30.404,0,-324.205,-30.404,-324.205	1/1:177:0,174,2:0:0:174,2:6220,72:-559.536,-52.3792,0,-553.661,-46.5044,-553.059	1/2:81:0,25,55:0:0:25,55:896,1943:-231.382,-158.303,-150.778,-73.1516,0,-56.595	1/2:53:0,30,23:0:0:30,23:1068,817:-153.974,-66.9277,-57.8968,-87.4012,0,-80.4775	1/2:52:0,27,24:0:0:27,24:955,823:-144.588,-66.7992,-58.6714,-77.7774,0,-70.5527	1/2:116:0,45,71:0:0:45,71:1616,2487:-334.537,-202.709,-189.163,-132.184,0,-110.811	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/1:62:0,62,0:0:0:62,0:2211,0:-199.254,-18.6639,0,-199.254,-18.6639,-199.254	1/2:93:0,28,65:0:0:28,65:1008,2304:-270.299,-188.05,-179.621,-82.6075,0,-63.0406	1/1:243:0,242,0:0:0:242,0:8635,0:-776.787,-72.8493,0,-776.787,-72.8493,-776.787	1/1:131:0,131,0:0:0:131,0:4657,0:-419.294,-39.4349,0,-419.294,-39.4349,-419.294	1/2:122:0,66,55:0:0:66,55:2338,1950:-349.37,-158.943,-139.075,-190.509,0,-173.952	1/2:156:0,80,75:0:0:80,75:2876,2649:-450.376,-215.739,-191.656,-234.654,0,-212.076	1/2:18:0,7,11:0:0:7,11:244,388:-51.7876,-31.9455,-29.8383,-20.1922,0,-16.8809	1/1:111:0,111,0:0:0:111,0:3930,0:-353.893,-33.4143,0,-353.893,-33.4143,-353.893	1/1:115:0,115,0:0:0:115,0:4089,0:-368.195,-34.6185,0,-368.195,-34.6185,-368.195	1/2:211:0,110,101:0:0:110,101:3940,3581:-613.417,-292.095,-258.982,-321.679,0,-291.275	1/1:147:0,146,0:0:0:146,0:5202,0:-467.959,-43.9504,0,-467.959,-43.9504,-467.959	1/1:59:0,59,0:0:0:59,0:2108,0:-189.989,-17.7608,0,-189.989,-17.7608,-189.989	1/2:124:1,63,59:1:36:63,59:2264,2078:-350.631,-166.23,-150.202,-181.76,0,-166.937	1/2:212:0,108,104:0:0:108,104:3847,3663:-612.132,-298.57,-266.058,-313.916,0,-282.609	1/2:56:0,35,21:0:0:35,21:1243,743:-162.156,-60.8719,-50.3359,-101.638,0,-95.3162	1/2:99:0,52,47:0:0:52,47:1868,1672:-289.007,-136.619,-120.965,-152.746,0,-138.597	1/2:101:0,47,54:0:0:47,54:1675,1920:-293.352,-156.82,-142.672,-136.888,0,-120.632	1/2:48:1,17,30:1:36:17,30:608,1054:-132.119,-82.841,-80.6612,-46.6373,0,-40.5439	1/2:87:0,41,45:0:0:41,45:1476,1591:-250.089,-129.651,-117.308,-120.512,0,-106.966	1/2:112:0,28,83:0:0:28,83:1004,2930:-320.476,-238.586,-230.157,-81.8872,0,-56.9018	1/1:92:0,91,1:0:0:91,1:3224,36:-290.023,-27.3937,0,-287.085,-24.0965,-286.784	1/1:117:0,114,3:0:0:114,3:4083,108:-367.295,-34.3174,0,-358.483,-25.1453,-357.58
chr02	25806301	.	CAAAACCACCG	CAAAACCACCC,CAAACCACCC	145231	PASS	AB=0.458656,0.526354;ABP=64.4184,27.9612;AC=125,61;AF=0.672043,0.327957;AN=186;AO=4683,2208;CIGAR=10M1X,1M1D8M1X;DP=6987;DPB=6783.64;DPRA=21.1394,1.03048;EPP=10094,4788.94;EPPR=9.52472;GTI=1;LEN=1,10;MEANALT=2.57778,2.95082;MQM=59.997,59.9149;MQMR=60;NS=93;NUMALT=2;ODDS=0.223491;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=9,9;PQR=9;PRO=0.5;QA=166743,78011;QR=82;RO=3;RPL=4674,2207;RPP=10094,4788.94;RPPR=9.52472;RPR=9,1;RUN=1,1;SAF=0,0;SAP=10172,4797.62;SAR=4683,2208;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,78,0:0:0:78,0:2762,0:-248.494,-23.4803,0,-248.494,-23.4803,-248.494	1/1:35:0,34,0:0:0:34,0:1209,0:-108.754,-10.235,0,-108.754,-10.235,-108.754	1/2:119:1,49,67:1:21:49,67:1756,2362:-333.736,-190.818,-177.655,-141.725,0,-123.142	1/2:100:0,46,51:0:0:46,51:1633,1790:-278.707,-145.651,-131.804,-133.037,0,-117.685	1/2:54:0,23,31:0:0:23,31:824,1108:-157.901,-90.6991,-83.7754,-67.5596,0,-58.2277	1/2:39:0,15,24:0:0:15,24:540,852:-113.839,-69.7757,-65.2602,-44.4211,0,-37.1964	1/2:92:0,52,38:0:0:52,38:1849,1360:-261.653,-110.973,-95.3194,-150.747,0,-139.308	1/2:102:0,63,38:0:0:63,38:2235,1317:-289.125,-107.026,-88.0611,-182.089,0,-170.65	1/2:98:0,57,39:0:0:57,39:2044,1371:-278.453,-111.73,-94.5716,-166.858,0,-155.118	1/2:31:0,11,19:0:0:11,19:396,676:-87.4018,-55.0888,-51.7775,-32.3116,0,-26.592	1/2:30:0,14,16:0:0:14,16:504,576:-88.4823,-47.3585,-43.1441,-41.4837,0,-36.6672	1/2:85:0,42,43:0:0:42,43:1500,1518:-246.256,-123.96,-111.317,-122.651,0,-109.707	1/2:47:0,19,27:0:0:19,27:680,960:-133.682,-78.2288,-72.5092,-55.4499,0,-47.3221	1/2:39:0,22,17:0:0:22,17:784,589:-112.126,-48.2158,-41.5931,-64.2613,0,-59.1437	1/2:70:0,33,37:0:0:33,37:1165,1322:-203.01,-108.144,-98.21,-95.221,0,-84.0829	1/2:66:0,24,41:0:0:24,41:860,1460:-189.173,-119.033,-111.808,-70.1757,0,-57.8334	1/1:14:0,14,0:0:0:14,0:500,0:-45.3362,-4.21442,0,-45.3362,-4.21442,-45.3362	1/1:31:0,31,0:0:0:31,0:1101,0:-99.3984,-9.33193,0,-99.3984,-9.33193,-99.3984	1/1:20:0,19,0:0:0:19,0:680,0:-61.1694,-5.71957,0,-61.1694,-5.71957,-61.1694	1/2:131:0,64,65:0:0:64,65:2242,2316:-371.345,-188.924,-169.658,-182.562,0,-162.995	1/1:137:0,136,0:0:0:136,0:4857,0:-436.923,-40.9401,0,-436.923,-40.9401,-436.923	1/1:89:1,88,0:1:29:88,0:3118,0:-277.946,-23.892,0,-278.247,-26.4906,-280.555	1/2:98:0,47,50:0:0:47,50:1679,1765:-280.527,-143.634,-129.486,-136.888,0,-121.837	1/1:88:0,87,0:0:0:87,0:3094,0:-278.325,-26.1896,0,-278.325,-26.1896,-278.325	1/1:119:0,118,0:0:0:118,0:4189,0:-376.962,-35.5215,0,-376.962,-35.5215,-376.962	1/1:244:0,242,0:0:0:242,0:8590,0:-772.823,-72.8493,0,-772.823,-72.8493,-772.823	1/1:203:0,202,0:0:0:202,0:7229,0:-650.302,-60.8081,0,-650.302,-60.8081,-650.302	1/1:36:0,36,0:0:0:36,0:1296,0:-116.944,-10.8371,0,-116.944,-10.8371,-116.944	1/2:215:0,95,116:0:0:95,116:3367,4079:-606.311,-332.019,-303.421,-274.286,0,-239.366	1/2:80:0,39,40:0:0:39,40:1385,1411:-227.886,-115.032,-103.291,-112.993,0,-100.952	1/2:76:0,31,43:0:0:31,43:1116,1532:-215.931,-124.869,-115.537,-91.0599,0,-78.1156	1/2:11:0,4,7:0:0:4,7:144,244:-31.946,-20.1922,-18.9881,-12.1095,0,-10.0023	1/1:21:0,20,0:0:0:20,0:711,0:-63.956,-6.0206,0,-63.956,-6.0206,-63.956	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:12:0,11,0:0:0:11,0:396,0:-35.6229,-3.31133,0,-35.6229,-3.31133,-35.6229	1/2:12:0,5,6:0:0:5,6:180,216:-32.3116,-17.6245,-16.1194,-14.6871,0,-12.8809	1/2:166:0,66,97:0:0:66,97:2334,3484:-474.363,-284.269,-264.401,-190.147,0,-160.947	1/2:134:0,60,74:0:0:60,74:2141,2564:-383.273,-208.731,-190.669,-174.894,0,-152.618	1/2:44:0,16,26:0:0:16,26:568,932:-122.292,-76.0124,-71.1959,-46.2761,0,-38.4493	.:.:.:.:.:.:.:.	1/1:94:0,93,0:0:0:93,0:3317,0:-298.388,-27.9958,0,-298.388,-27.9958,-298.388	1/2:24:0,11,13:0:0:11,13:396,464:-70.4971,-38.1841,-34.8728,-32.6714,0,-28.758	1/2:176:0,77,98:0:0:77,98:2723,3439:-501.64,-279.863,-256.683,-221.77,0,-192.269	1/2:45:0,26,18:0:0:26,18:913,632:-125.871,-51.5613,-43.7346,-74.4318,0,-69.0133	1/2:50:0,29,21:0:0:29,21:1036,737:-144.8,-60.329,-51.5991,-84.824,0,-78.5024	1/1:144:0,141,0:0:0:141,0:5014,0:-451.1,-42.4452,0,-451.1,-42.4452,-451.1	1/2:111:0,49,61:0:0:49,61:1760,2142:-317.952,-174.374,-159.623,-143.632,0,-125.269	1/2:137:0,70,66:0:0:70,66:2463,2333:-390.576,-190.08,-169.008,-200.567,0,-180.699	1/2:109:0,41,67:0:0:41,67:1476,2371:-313.556,-193.12,-180.778,-120.434,0,-100.265	1/1:39:0,37,2:0:0:37,2:1320,72:-118.742,-11.1381,0,-112.867,-4.90345,-112.265	1/2:148:0,77,68:0:0:77,68:2711,2363:-412.805,-192.103,-168.924,-220.705,0,-200.235	2/2:3:0,0,3:0:0:0,3:0,104:-9.7028,-9.7028,-9.7028,-0.90309,-0.90309,0	1/1:121:0,121,0:0:0:121,0:4302,0:-387.356,-36.4246,0,-387.356,-36.4246,-387.356	1/1:41:0,39,0:0:0:39,0:1389,0:-125.019,-11.7402,0,-125.019,-11.7402,-125.019	1/2:14:0,3,11:0:0:3,11:108,388:-40.7598,-31.946,-31.0429,-9.17208,0,-5.86075	1/2:92:0,53,39:0:0:53,39:1892,1395:-268.354,-114.108,-98.1536,-154.603,0,-142.863	1/1:63:0,57,3:0:0:57,3:2048,108:-184.269,-17.1587,0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chr02	25807209	.	C	G	35864.1	PASS	AB=0.46463;ABP=54.9311;AC=55;AF=0.292553;AN=188;AO=2225;CIGAR=1X;DP=8829;DPB=8829;DPRA=0.971891;EPP=4834.54;EPPR=14336.9;GTI=1;LEN=1;MEANALT=1.01724;MQM=59.942;MQMR=59.9855;NS=94;NUMALT=1;ODDS=0.846488;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79123;QR=236410;RO=6601;RPL=0;RPP=4834.54;RPPR=14336.9;RPR=2225;RUN=1;SAF=2225;SAP=4834.54;SAR=0;SRF=6601;SRP=14336.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:157:155,0:155:5537:0:0:0,-46.6596,-497.867	0/1:117:55,62:55:1972:62:2194:-162.502,0,-142.534	0/1:143:77,66:77:2753:66:2347:-168.442,0,-204.963	0/1:41:25,16:25:900:16:576:-39.8328,0,-68.9788	0/1:56:31,25:31:1108:25:896:-64.1027,0,-83.1733	0/1:122:59,63:59:2124:63:2225:-163.788,0,-154.703	0/1:157:89,68:89:3184:68:2410:-169.464,0,-239.522	0/1:89:57,32:57:2044:32:1137:-75.8453,0,-157.44	0/1:126:53,73:53:1904:73:2609:-197.127,0,-133.708	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	0/1:60:30,30:30:1072:30:1076:-79.0626,0,-78.7307	0/1:58:30,28:30:1067:28:978:-70.8686,0,-78.8815	0/1:60:33,27:33:1188:27:923:-65.3134,0,-89.1668	0/1:54:29,25:29:1036:25:885:-63.7109,0,-77.2983	0/1:49:21,28:21:756:28:1008:-76.2859,0,-53.6168	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:139:76,63:76:2724:63:2264:-162.179,0,-203.56	0/0:148:148,0:148:5316:0:0:0,-44.5524,-478.145	0/0:97:97,0:97:3461:0:0:0,-29.1999,-311.701	0/1:97:61,36:61:2192:36:1273:-85.671,0,-168.345	0/0:203:203,0:203:7272:0:0:0,-61.1091,-654.531	0/0:63:63,0:63:2237:0:0:0,-18.9649,-201.592	0/0:340:337,3:337:12077:3:108:0,-92.275,-1076.7	0/0:174:174,0:174:6240:0:0:0,-52.3792,-561.694	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:248:120,128:120:4300:128:4592:-338.788,0,-312.521	0/1:162:114,48:114:4088:48:1699:-104.427,0,-319.338	0/1:150:83,67:83:2972:67:2385:-169.75,0,-222.558	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:183:101,82:101:3607:82:2909:-206.956,0,-269.748	0/1:212:116,96:116:4160:96:3406:-242.935,0,-310.764	0/1:53:28,25:28:1008:25:896:-65.0058,0,-75.0818	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:163:163,0:163:5820:0:0:0,-49.0679,-523.914	0/1:23:12,11:12:419:11:396:-29.0591,0,-31.119	0/1:100:64,36:64:2304:36:1277:-85.1281,0,-177.517	0/1:65:30,35:30:1080:35:1252:-93.4181,0,-77.9463	0/1:53:21,32:21:752:32:1118:-84.9683,0,-52.0517	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/1:106:60,46:60:2135:46:1633:-115.348,0,-160.508	0/1:167:91,76:91:3268:76:2724:-195.131,0,-244.05	0/1:128:81,47:81:2904:47:1688:-113.658,0,-223.064	0/0:147:147,0:147:5254:0:0:0,-44.2514,-472.994	0/1:143:57,86:57:2040:86:3031:-229.942,0,-140.825	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:162:162,0:162:5812:0:0:0,-48.7669,-523.192	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:114:72,42:72:2584:42:1466:-97.913,0,-198.491	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/1:90:53,37:53:1885:37:1326:-92.5496,0,-142.834	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:235:235,0:235:8394:0:0:0,-70.742,-755.464	0/0:202:202,0:202:7196:0:0:0,-60.8081,-647.692	0/1:70:37,33:37:1332:33:1169:-84.4432,0,-99.1087	0/0:61:60,1:60:2148:1:36:0,-14.7646,-189.989	0/0:209:207,1:207:7408:1:21:0,-60.7243,-664.659	0/1:125:55,70:55:1980:70:2516:-189.045,0,-140.846	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:73:46,27:46:1637:27:972:-65.8227,0,-125.642	0/1:69:38,31:38:1347:31:1097:-78.2669,0,-100.758	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.432	0/1:84:44,40:44:1576:40:1402:-101.187,0,-116.845	0/0:212:212,0:212:7583:0:0:0,-63.8184,-682.509	0/0:243:243,0:243:8678:0:0:0,-73.1503,-781.012	0/1:97:61,36:61:2184:36:1269:-85.3002,0,-167.626	0/1:133:55,78:55:1972:78:2789:-211.212,0,-137.718	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.517	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/1:185:94,91:94:3376:91:3242:-236.308,0,-248.364	0/0:119:119,0:119:4262:0:0:0,-35.8226,-383.757	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.281	0/1:68:36,32:36:1296:32:1144:-82.7995,0,-96.4739	0/1:108:57,51:57:2026:51:1821:-131.658,0,-150.1	0/1:30:15,15:15:531:15:536:-39.5439,0,-39.091	0/1:66:40,26:40:1440:26:891:-60.6287,0,-110.03	0/1:45:20,25:20:716:25:896:-67.414,0,-51.2214	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:68:44,24:44:1575:24:864:-57.6125,0,-121.571	0/1:77:27,50:27:968:50:1783:-137.573,0,-64.2581	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866
chr02	25807355	.	T	C	18413.7	PASS	AB=0.457083;ABP=48.8613;AC=56;AF=0.297872;AN=188;AO=1315;CIGAR=1X;DP=5135;DPB=5135;DPRA=0.90723;EPP=2849.82;EPPR=8280.67;GTI=4;LEN=1;MEANALT=1;MQM=38.2084;MQMR=59.9277;NS=94;NUMALT=1;ODDS=1.22423;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46980;QR=136762;RO=3820;RPL=1;RPP=2849.82;RPPR=8280.67;RPR=1314;RUN=1;SAF=0;SAP=2858.5;SAR=1315;SRF=0;SRP=8298.03;SRR=3820;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.171	0/1:81:45,36:45:1620:36:1296:-82.279,0,-121.707	0/1:126:78,48:78:2792:48:1719:-109.81,0,-213.588	0/1:27:16,11:16:576:11:396:-25.7482,0,-44.0472	0/1:24:13,11:13:468:11:388:-25.1717,0,-35.2349	0/1:18:8,10:8:288:10:360:-25.7215,0,-20.8489	0/1:63:40,23:40:1420:23:798:-47.2408,0,-109.133	0/1:65:43,22:43:1533:22:784:-45.4398,0,-118.694	0/1:49:29,20:29:1040:20:716:-46.9884,0,-79.1639	0/1:28:20,8:20:720:8:288:-16.7889,0,-56.6999	0/1:76:34,42:34:1224:42:1504:-101.186,0,-87.5604	0/1:48:23,25:23:828:25:862:-55.9197,0,-60.3947	0/1:39:19,20:19:684:20:720:-49.4474,0,-50.1455	0/1:55:28,27:28:1000:27:953:-65.6608,0,-73.7583	0/1:61:36,25:36:1296:25:892:-56.8525,0,-98.5811	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6795	0/1:68:34,34:34:1208:34:1209:-83.9938,0,-88.556	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.919	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:51:35,16:35:1256:16:561:-32.9193,0,-97.9928	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.586	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:184:184,0:184:6597:0:0:0,-55.3895,-593.804	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.574	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/1:108:52,56:52:1849:56:2001:-141.705,0,-134.177	0/1:99:58,41:58:2088:41:1472:-93.8978,0,-158.388	0/1:60:30,30:30:1076:30:1050:-71.6382,0,-79.0911	0/1:6:5,1:5:180:1:36:-1.58142,0,-14.7459	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:10:5,5:5:180:5:180:-12.1652,0,-13.5418	0/1:153:84,69:84:2986:69:2480:-169.426,0,-222.912	0/1:62:35,27:35:1260:27:972:-63.3249,0,-95.0416	0/1:29:15,14:15:540:14:504:-32.5561,0,-40.2067	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/1:20:7,13:7:248:13:464:-33.6141,0,-16.6436	0/1:61:38,23:38:1364:23:828:-49.4755,0,-104.698	0/1:30:15,15:15:536:15:536:-37.1613,0,-39.5439	0/1:44:22,22:22:788:22:784:-54.8251,0,-57.9995	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:57:33,24:33:1180:24:864:-54.1708,0,-89.3493	0/1:76:43,33:43:1525:33:1180:-78.8316,0,-114.663	0/1:38:23,15:23:828:15:540:-35.5419,0,-63.405	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.114	0/1:63:40,23:40:1436:23:828:-53.0807,0,-110.573	0/1:4:2,2:2:72:2:72:-4.67704,0,-5.6326	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:4:3,1:3:108:1:36:-2.0949,0,-8.87105	0/1:92:40,52:40:1432:52:1864:-129.59,0,-101.483	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:2:1,1:1:36:1:36:-2.90064,0,-2.99621	0/1:7:3,4:3:104:4:144:-10.8528,0,-7.5956	0/1:53:32,21:32:1144:21:756:-47.6132,0,-87.3149	0/0:69:67,2:67:2408:2:72:0,-13.9343,-210.139	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:101:101,0:101:3572:0:0:0,-30.404,-321.684	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.337	0/1:36:15,21:15:536:21:756:-52.938,0,-37.7377	0/0:59:59,0:59:2109:0:0:0,-17.7608,-190.077	0/0:114:111,3:111:3961:3:108:0,-24.6448,-347.008	0/1:102:39,63:39:1404:63:2228:-159.854,0,-95.9542	0/1:24:7,17:7:244:17:612:-43.5558,0,-15.0747	0/1:33:24,9:24:849:9:324:-16.8135,0,-66.7938	0/1:35:21,14:21:752:14:489:-32.6835,0,-57.4702	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:134:134,0:134:4801:0:0:0,-40.338,-432.196	0/1:68:33,35:33:1165:35:1260:-82.8958,0,-84.64	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.949	0/0:115:115,0:115:4136:0:0:0,-34.6184,-372.42	0/1:44:27,17:27:919:17:612:-36.5194,0,-69.2771	0/1:44:23,21:23:828:21:756:-48.9895,0,-61.5988	0/1:6:5,1:5:180:1:36:-1.49284,0,-14.7459	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.863	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.35	0/1:116:66,50:66:2360:50:1788:-117.518,0,-177.683	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.129	0/1:27:10,17:10:356:17:593:-42.8421,0,-24.2534	0/1:106:64,42:64:2285:42:1512:-96.851,0,-174.001	0/1:19:7,12:7:252:12:432:-30.0805,0,-17.3094	0/1:58:33,25:33:1184:25:892:-52.8429,0,-89.4086	0/1:58:32,26:32:1148:26:921:-58.8595,0,-86.1674	0/1:19:6,13:6:216:13:468:-34.2541,0,-14.0709	0/1:62:34,28:34:1220:28:1008:-66.0327,0,-91.4377	0/1:52:23,29:23:824:29:1040:-74.651,0,-58.8298	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609
chr02	25807376	.	C	T	12383.2	PASS	AB=0.426009;ABP=130.261;AC=55;AF=0.292553;AN=188;AO=1143;CIGAR=1X;DP=4927;DPB=4927;DPRA=0.88519;EPP=2485;EPPR=8169.98;GTI=5;LEN=1;MEANALT=1.03571;MQM=38.1496;MQMR=59.9262;NS=94;NUMALT=1;ODDS=0.803074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36970;QR=135036;RO=3781;RPL=1143;RPP=2485;RPPR=8169.98;RPR=0;RUN=1;SAF=0;SAP=2485;SAR=1143;SRF=0;SRP=8213.35;SRR=3781;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.188	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.499	0/1:77:45,32:45:1605:32:1042:-63.9803,0,-121.559	0/1:121:76,45:76:2732:45:1483:-92.4516,0,-209.695	0/1:26:16,10:16:576:10:333:-21.0432,0,-44.3482	0/1:23:13,10:13:468:10:307:-19.238,0,-35.536	0/1:18:8,10:8:288:10:315:-22.1028,0,-20.8489	0/1:62:41,21:41:1453:21:680:-38.6043,0,-112.4	0/1:61:40,21:40:1436:21:680:-38.8444,0,-111.175	0/1:48:29,19:29:1025:19:608:-38.3914,0,-78.1113	0/1:26:20,6:20:716:6:212:-10.8811,0,-56.9409	0/1:68:33,35:33:1173:35:1245:-82.4255,0,-85.4046	0/1:40:22,18:22:783:18:599:-36.7092,0,-58.7517	0/1:32:16,16:16:576:16:538:-36.4935,0,-42.542	0/1:51:27,24:27:968:24:786:-53.1429,0,-72.0844	0/1:52:35,17:35:1260:17:585:-33.5628,0,-98.0519	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.441	0/1:66:33,33:33:1184:33:1059:-72.3937,0,-87.0003	0/0:101:101,0:101:3601:0:0:0,-30.404,-324.296	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/1:48:35,13:35:1260:13:430:-23.2062,0,-99.256	0/0:42:42,0:42:1481:0:0:0,-12.6433,-133.573	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:182:182,0:182:6498:0:0:0,-54.7875,-584.9	0/0:114:113,0:113:3987:0:0:0,-34.0164,-358.653	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:103:51,52:51:1828:52:1619:-111.548,0,-133.794	0/1:93:57,36:57:2040:36:1083:-65.3591,0,-155.876	0/1:56:29,27:29:1032:27:795:-52.1141,0,-76.3358	0/1:6:5,1:5:180:1:32:-1.29655,0,-14.7459	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:9:5,4:5:180:4:114:-7.25411,0,-13.8428	0/1:142:83,59:83:2976:59:1965:-128.249,0,-225.326	0/1:57:34,23:34:1220:23:707:-43.4744,0,-92.9481	0/1:28:17,11:17:608:11:365:-21.8316,0,-46.6186	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:99:99,0:99:3516:0:0:0,-29.802,-316.65	0/1:19:7,12:7:252:12:353:-24.9795,0,-17.3094	0/1:62:41,21:41:1472:21:661:-37.4767,0,-114.111	0/1:24:14,10:14:500:10:333:-21.6025,0,-38.1115	0/1:37:22,14:22:788:14:395:-23.7654,0,-60.0617	0/0:85:85,0:85:3030:0:0:0,-25.5875,-272.923	0/1:55:33,22:33:1184:22:671:-40.4199,0,-90.2941	0/1:75:44,30:44:1553:30:955:-60.1195,0,-117.424	0/1:36:23,13:23:813:13:452:-28.7701,0,-62.652	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.961	0/1:61:40,21:40:1440:21:676:-41.2817,0,-111.535	0/1:4:2,2:2:72:2:72:-4.67704,0,-5.6326	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.582	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:87:39,48:39:1381:48:1591:-109.173,0,-98.3972	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:2:1,1:1:36:1:36:-2.90064,0,-2.99621	0/1:7:3,4:3:108:4:99:-6.95083,0,-7.96796	0/1:51:31,20:31:1116:20:659:-40.5347,0,-85.3992	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/0:121:121,0:121:4324:0:0:0,-36.4246,-389.335	0/1:30:15,15:15:536:15:461:-30.3159,0,-39.5439	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:113:110,3:110:3945:3:93:0,-25.613,-346.75	0/1:95:41,54:41:1472:54:1644:-113.737,0,-104.174	0/1:20:7,13:7:252:13:415:-29.1869,0,-17.0084	0/1:30:24,6:24:860:6:197:-7.7099,0,-68.6909	0/1:31:19,12:19:680:12:416:-27.5615,0,-52.1972	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8171	0/0:130:130,0:130:4610:0:0:0,-39.1339,-415.026	0/1:64:32,32:32:1152:32:1019:-66.6715,0,-84.6793	0/0:108:108,0:108:3823:0:0:0,-32.5112,-344.261	0/0:114:114,0:114:4065:0:0:0,-34.3174,-366.034	0/1:41:26,15:26:932:15:498:-29.3525,0,-71.5569	0/1:42:24,18:24:864:18:605:-38.0361,0,-65.4393	0/1:6:5,1:5:171:1:21:-0.280405,0,-13.9193	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.265	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:116:65,51:65:2309:51:1658:-108.404,0,-173.15	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.598	0/1:23:11,12:11:396:12:394:-27.029,0,-29.0544	0/1:100:64,36:64:2277:36:1186:-72.068,0,-175.088	0/1:17:7,10:7:252:10:322:-22.2402,0,-17.9114	0/1:57:33,24:33:1184:24:829:-48.2208,0,-89.7096	0/1:54:32,22:32:1137:22:750:-46.2815,0,-86.3781	0/1:17:5,12:5:180:12:409:-30.1125,0,-11.4346	0/1:56:32,24:32:1152:24:799:-51.6253,0,-87.1325	0/1:44:22,22:22:784:22:719:-49.7931,0,-57.634	0/0:80:80,0:80:2840:0:0:0,-24.0824,-255.837	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889
chr02	25807388	.	CTTA	CTTT,TTTT	106564	PASS	AB=0.542114,0.456153;ABP=47.4551,51.1884;AC=132,56;AF=0.702128,0.297872;AN=188;AO=3826,1319;CIGAR=3M1X,1X2M1X;DP=5157;DPB=5157;DPRA=0,0.902813;EPP=8311.06,2867.18;EPPR=0;GTI=4;LEN=1,4;MEANALT=1.7234,2.08772;MQM=59.9007,38.1114;MQMR=0;NS=94;NUMALT=2;ODDS=1.15799;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=136387,46932;QR=0;RO=0;RPL=3826,1319;RPP=8311.06,2867.18;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8311.06,2867.18;SAR=3826,1319;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42,0:0:0:42,0:1504,0:-135.548,-12.6433,0,-135.548,-12.6433,-135.548	1/1:37:0,37,0:0:0:37,0:1313,0:-118.465,-11.1381,0,-118.465,-11.1381,-118.465	1/2:81:0,45,36:0:0:45,36:1612,1272:-226.004,-94.5191,-80.9728,-131.824,0,-120.987	1/2:129:0,79,50:0:0:79,50:2824,1760:-367.12,-136.85,-113.068,-230.616,0,-215.564	1/2:27:0,16,11:0:0:16,11:572,396:-77.2153,-30.5647,-25.7482,-46.9969,0,-43.6856	1/2:24:0,13,11:0:0:13,11:468,388:-67.3071,-29.1013,-25.1879,-38.5463,0,-35.2349	1/2:18:0,8,10:0:0:8,10:280,354:-50.4925,-27.7058,-25.2976,-23.1311,0,-20.1208	1/2:66:0,43,23:0:0:43,23:1517,816:-184.384,-60.8424,-47.8982,-123.877,0,-116.953	1/2:65:0,43,22:0:0:43,22:1548,776:-184.282,-57.9494,-45.0051,-126.669,0,-120.046	1/2:48:0,27,20:0:0:27,20:960,710:-133.214,-54.9721,-46.8443,-78.2288,0,-72.2082	1/2:28:0,20,8:0:0:20,8:720,288:-81.5682,-22.8095,-16.7889,-59.1082,0,-56.6999	1/2:76:0,33,43:0:0:33,43:1180,1530:-209.84,-113.638,-103.704,-96.5456,0,-83.6014	1/2:48:0,23,25:0:0:23,25:828,898:-131.988,-64.4078,-57.4841,-67.9204,0,-60.3947	1/2:38:0,18,20:0:0:18,20:634,699:-105.367,-53.7408,-48.3223,-51.9674,0,-45.9468	1/2:53:0,27,26:0:0:27,26:964,934:-151.276,-72.6768,-64.549,-78.9486,0,-71.1218	1/2:61:0,35,26:0:0:35,26:1256,926:-172.213,-69.7465,-59.2104,-102.809,0,-94.9825	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:14:0,14,0:0:0:14,0:504,0:-45.6795,-4.21442,0,-45.6795,-4.21442,-45.6795	1/2:69:0,34,35:0:0:34,35:1201,1239:-194.472,-96.6592,-86.4242,-98.1586,0,-87.6226	1/1:102:0,101,0:0:0:101,0:3574,0:-321.646,-30.404,0,-321.646,-30.404,-321.646	1/1:45:0,45,0:0:0:45,0:1604,0:-144.65,-13.5464,0,-144.65,-13.5464,-144.65	1/2:50:0,34,16:0:0:34,16:1224,560:-143.458,-43.5684,-33.3334,-100.232,0,-95.4155	1/1:42:0,42,0:0:0:42,0:1492,0:-134.555,-12.6433,0,-134.555,-12.6433,-134.555	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/1:181:0,179,0:0:0:179,0:6396,0:-575.368,-53.8844,0,-575.368,-53.8844,-575.368	1/1:115:0,115,0:0:0:115,0:4089,0:-368.184,-34.6185,0,-368.184,-34.6185,-368.184	1/1:29:0,29,0:0:0:29,0:1032,0:-93.1935,-8.72987,0,-93.1935,-8.72987,-93.1935	1/2:108:0,52,56:0:0:52,56:1848,1998:-307.919,-157.323,-141.669,-150.946,0,-134.088	1/2:99:0,58,41:0:0:58,41:2080,1464:-280.583,-110.916,-93.4565,-170.011,0,-157.668	1/2:61:0,31,30:0:0:31,30:1085,1077:-170.806,-82.5245,-73.1926,-88.625,0,-79.5941	1/2:6:0,5,1:0:0:5,1:176,36:-17.4255,-3.08657,-1.58142,-14.6799,0,-14.3788	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:10:0,5,5:0:0:5,5:180,180:-28.3724,-13.6704,-12.1652,-15.0469,0,-13.5418	1/2:154:0,85,68:0:0:85,68:3044,2433:-439.782,-191.53,-165.943,-248.336,0,-227.866	1/2:63:0,36,27:0:0:36,27:1276,970:-177.702,-73.7406,-62.9035,-104.305,0,-96.1776	1/2:31:0,17,14:0:0:17,14:608,491:-85.9699,-36.3768,-31.2593,-49.9299,0,-45.7155	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:103:0,101,0:0:0:101,0:3613,0:-325.068,-30.404,0,-325.068,-30.404,-325.068	1/2:21:0,7,14:0:0:7,14:252,496:-58.803,-38.2325,-36.1253,-20.9217,0,-16.7073	1/2:65:0,41,24:0:0:41,24:1468,857:-182.952,-63.2159,-50.8736,-120.073,0,-112.848	1/2:30:0,15,15:0:0:15,15:540,540:-86.0357,-41.9654,-37.4499,-44.4211,0,-39.9056	1/2:44:0,20,23:0:0:20,23:716,825:-122.664,-64.2686,-58.248,-58.3874,0,-51.4637	1/1:85:0,85,0:0:0:85,0:3013,0:-271.399,-25.5876,0,-271.399,-25.5876,-271.399	1/2:58:0,33,25:0:0:33,25:1184,895:-163.105,-66.5289,-56.5949,-96.9167,0,-89.391	1/2:79:0,46,33:0:0:46,33:1644,1166:-224.563,-90.5072,-76.6598,-134.401,0,-124.467	1/2:37:0,22,15:0:0:22,15:788,534:-106.304,-42.0307,-35.408,-64.6221,0,-60.1067	1/1:46:0,45,0:0:0:45,0:1600,0:-143.913,-13.5464,0,-143.913,-13.5464,-143.913	1/2:63:0,40,23:0:0:40,23:1405,806:-177.725,-63.3634,-51.3222,-114.704,0,-107.78	1/2:4:0,2,2:0:0:2,2:72,72:-11.1791,-5.2791,-4.67704,-6.23466,0,-5.6326	1/1:91:0,91,0:0:0:91,0:3241,0:-291.911,-27.3937,0,-291.911,-27.3937,-291.911	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/2:4:0,3,1:0:0:3,1:104,36:-11.4637,-2.99799,-2.0949,-8.79971,0,-8.49868	1/2:91:0,39,52:0:0:39,52:1392,1858:-254.768,-141.276,-129.536,-113.839,0,-98.1853	1/1:25:0,25,0:0:0:25,0:888,0:-80.239,-7.52575,0,-80.239,-7.52575,-80.239	1/2:2:0,1,1:0:0:1,1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chr02	25890102	.	A	G	15453.7	PASS	AB=0.454508;ABP=46.8705;AC=55;AF=0.298913;AN=184;AO=1115;CIGAR=1X;DP=4539;DPB=4539;DPRA=0.862954;EPP=2415.52;EPPR=7429.45;GTI=3;LEN=1;MEANALT=1;MQM=38.522;MQMR=38.6855;NS=92;NUMALT=1;ODDS=0.48431;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39597;QR=122610;RO=3424;RPL=1114;RPP=2415.52;RPPR=7429.45;RPR=1;RUN=1;SAF=1115;SAP=2424.2;SAR=0;SRF=3424;SRP=7438.13;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:464:0:0:0,-3.91339,-36.8715	0/0:45:44,1:44:1568:1:36:0,-10.2473,-125.293	0/1:67:39,28:39:1404:28:992:-61.9238,0,-92.8764	0/1:61:32,29:32:1152:29:1040:-70.4989,0,-80.7628	0/1:17:12,5:12:432:5:180:-10.384,0,-31.6464	0/1:21:7,14:7:248:14:504:-33.7886,0,-14.0241	0/1:30:10,20:10:356:20:712:-52.7606,0,-21.6132	0/1:54:24,30:24:864:30:1080:-72.9467,0,-55.3332	0/1:28:16,12:16:572:12:424:-26.8663,0,-39.4533	0/1:47:37,10:37:1316:10:360:-16.5616,0,-99.3897	0/1:18:8,10:8:288:10:356:-25.0436,0,-19.0828	0/1:42:26,16:26:924:16:558:-33.1465,0,-64.2209	0/1:32:26,6:26:928:6:216:-8.51168,0,-67.0638	0/1:34:17,17:17:612:17:604:-41.4179,0,-41.2637	0/1:29:11,18:11:392:18:620:-45.3533,0,-24.8726	0/1:19:8,11:8:288:11:396:-27.154,0,-18.8	0/0:22:22,0:22:783:0:0:0,-6.62266,-64.2251	0/0:17:17,0:17:608:0:0:0,-5.11751,-50.164	0/0:18:18,0:18:640:0:0:0,-5.41854,-52.4932	0/1:86:49,37:49:1748:37:1319:-88.152,0,-123.31	0/0:74:74,0:74:2656:0:0:0,-22.2762,-223.615	0/0:58:58,0:58:2076:0:0:0,-17.4597,-180.884	0/1:33:23,10:23:815:10:356:-20.8482,0,-60.93	0/0:19:19,0:19:684:0:0:0,-5.71957,-57.263	0/0:16:16,0:16:576:0:0:0,-4.81648,-48.9597	0/0:134:134,0:134:4796:0:0:0,-40.338,-415.459	0/0:103:102,1:102:3656:1:36:0,-27.6185,-305.476	0/0:15:15,0:15:532:0:0:0,-4.51545,-44.7805	0/1:145:69,76:69:2476:76:2693:-192.063,0,-173.269	0/1:77:38,39:38:1368:39:1404:-95.7444,0,-90.8219	0/1:64:35,29:35:1260:29:1034:-68.6291,0,-89.7583	0/1:4:3,1:3:108:1:36:-1.91952,0,-8.28116	0/0:9:9,0:9:320:0:0:0,-2.70927,-26.9253	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.2064	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.29902	0/1:90:47,43:47:1680:43:1506:-104.772,0,-119.278	0/1:71:47,24:47:1692:24:864:-51.0872,0,-122.101	0/1:5:3,2:3:108:2:72:-4.763,0,-7.73212	.:.:.:.:.:.:.:.	0/0:60:60,0:60:2152:0:0:0,-18.0618,-180.99	0/1:10:4,6:4:144:6:212:-15.3604,0,-9.52382	0/1:83:41,42:41:1464:42:1500:-101.278,0,-94.8212	0/1:20:10,10:10:360:10:360:-25.1724,0,-24.5644	0/1:13:7,6:7:252:6:216:-14.987,0,-18.1342	0/0:37:37,0:37:1323:0:0:0,-11.1381,-115.997	0/1:22:14,8:14:504:8:279:-16.8667,0,-35.275	0/1:72:44,28:44:1563:28:986:-64.0048,0,-111.665	0/1:43:30,13:30:1076:13:468:-27.106,0,-80.3241	0/0:76:76,0:76:2720:0:0:0,-22.8783,-231.497	0/1:149:78,71:78:2800:71:2531:-175.837,0,-199.213	0/1:6:2,4:2:72:4:144:-10.9754,0,-4.75735	0/0:59:59,0:59:2112:0:0:0,-17.7608,-173.72	0/0:61:59,2:59:2120:2:72:0,-12.8476,-178.846	0/1:6:2,4:2:72:4:135:-9.79857,0,-4.46197	0/1:76:36,40:36:1296:40:1436:-98.5613,0,-86.5507	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.7816	0/1:4:2,2:2:72:2:72:-5.45101,0,-5.25649	0/1:21:13,8:13:455:8:284:-18.7707,0,-33.6265	0/1:41:18,23:18:648:23:806:-54.2297,0,-42.574	0/0:84:84,0:84:3012:0:0:0,-25.2865,-258.439	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.9384	0/0:166:166,0:166:5960:0:0:0,-49.971,-519.394	0/0:105:103,2:103:3696:2:72:0,-25.8956,-310.395	0/1:44:25,19:25:896:19:676:-44.0297,0,-62.8167	0/0:43:43,0:43:1544:0:0:0,-12.9443,-130.434	0/0:117:117,0:117:4192:0:0:0,-35.2205,-361.691	0/1:136:45,91:45:1616:91:3245:-238.347,0,-98.2443	0/1:10:4,6:4:144:6:216:-15.5403,0,-9.48547	0/1:33:20,13:20:716:13:447:-27.7134,0,-49.3958	0/1:28:11,17:11:392:17:612:-44.4258,0,-26.2649	0/0:34:34,0:34:1216:0:0:0,-10.235,-105.117	0/0:65:65,0:65:2317:0:0:0,-19.5669,-189.739	0/1:47:18,29:18:648:29:1021:-69.8383,0,-39.116	0/0:103:103,0:103:3691:0:0:0,-31.0061,-312.061	0/0:153:153,0:153:5453:0:0:0,-46.0576,-470.042	0/1:49:35,14:35:1260:14:494:-25.8601,0,-87.9947	0/1:74:46,28:46:1652:28:1004:-59.7721,0,-112.14	0/1:17:15,2:15:540:2:63:-0.366116,0,-38.4068	0/0:62:62,0:62:2223:0:0:0,-18.6639,-186.674	0/0:47:47,0:47:1692:0:0:0,-14.1484,-138.532	0/1:146:90,56:90:3216:56:1995:-127.451,0,-232.964	0/0:45:45,0:45:1612:0:0:0,-13.5463,-138.752	0/0:38:38,0:38:1364:0:0:0,-11.4391,-117.025	0/1:13:7,6:7:252:6:212:-14.7945,0,-17.9677	0/1:47:31,16:31:1104:16:521:-31.428,0,-80.1548	0/1:17:12,5:12:432:5:180:-10.058,0,-30.0682	0/1:33:18,15:18:644:15:515:-33.3554,0,-42.2811	0/1:35:26,9:26:932:9:309:-15.4113,0,-65.4318	0/1:11:8,3:8:284:3:108:-6.09128,0,-20.9966	0/1:39:22,17:22:784:17:612:-40.4289,0,-54.0432	0/1:21:10,11:10:356:11:396:-28.2233,0,-24.7259	0/0:145:145,0:145:5180:0:0:0,-43.6493,-446.03	0/0:41:41,0:41:1455:0:0:0,-12.3422,-125.8
chr02	25890107	.	T	G	64708.3	PASS	AB=0.545529;ABP=46.9065;AC=129;AF=0.701087;AN=184;AO=3414;CIGAR=1X;DP=4529;DPB=4529;DPRA=0;EPP=7416.42;EPPR=2424.2;GTI=3;LEN=1;MEANALT=1;MQM=38.6828;MQMR=38.5605;NS=92;NUMALT=1;ODDS=0.433985;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122004;QR=39899;RO=1115;RPL=3414;RPP=7416.42;RPPR=2424.2;RPR=0;RUN=1;SAF=3414;SAP=7416.42;SAR=0;SRF=1115;SRP=2424.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:424:-34.1127,-3.61236,0	1/1:46:1,45:1:36:45:1616:-128.924,-10.5484,0	0/1:69:29,40:29:1040:40:1436:-95.023,0,-64.9537	0/1:64:31,33:31:1103:33:1173:-81.7408,0,-74.8451	0/1:18:5,13:5:180:13:468:-34.3943,0,-10.0829	0/1:21:14,7:14:504:7:252:-14.3889,0,-33.7886	0/1:28:18,10:18:648:10:356:-22.2153,0,-47.7207	0/1:54:30,24:30:1076:24:860:-55.0517,0,-72.7258	0/1:29:13,16:13:464:16:561:-38.275,0,-29.6761	0/1:48:11,37:11:379:37:1324:-99.4799,0,-18.1025	0/1:16:9,7:9:305:7:252:-16.5744,0,-21.5398	0/1:43:17,26:17:594:26:928:-64.1408,0,-35.4546	0/1:32:6,26:6:216:26:921:-66.4099,0,-8.51168	0/1:35:17,18:17:612:18:640:-43.5324,0,-41.633	0/1:30:18,12:18:648:12:423:-26.9027,0,-47.2167	0/1:20:12,8:12:432:8:279:-17.9424,0,-29.9027	1/1:22:0,22:0:0:22:788:-64.5923,-6.62266,0	1/1:18:0,18:0:0:18:636:-52.7674,-5.41854,0	1/1:18:0,18:0:0:18:644:-52.7146,-5.41854,0	0/1:86:38,48:38:1364:48:1705:-120.773,0,-91.9117	1/1:71:0,71:0:0:71:2556:-215.062,-21.3731,0	1/1:58:0,58:0:0:58:2069:-180.236,-17.4597,0	0/1:31:10,21:10:360:21:756:-56.3034,0,-21.74	1/1:20:0,20:0:0:20:720:-60.3121,-6.0206,0	1/1:16:0,16:0:0:16:576:-48.9597,-4.81648,0	1/1:134:1,133:1:36:133:4722:-406.131,-36.7423,0	1/1:103:1,102:1:36:102:3637:-303.788,-27.6185,0	1/1:16:0,16:0:0:16:568:-47.7497,-4.81648,0	0/1:145:76,69:76:2732:69:2472:-172.866,0,-195.178	0/1:77:38,39:38:1368:39:1396:-93.2768,0,-92.6956	0/1:64:29,35:29:1036:35:1252:-89.2207,0,-68.8732	0/1:4:1,3:1:36:3:104:-8.01528,0,-1.91952	1/1:10:0,10:0:0:10:356:-29.9752,-3.0103,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-12.2064,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.29902,-0.30103,0	0/1:88:41,47:41:1463:47:1672:-119.259,0,-101.486	0/1:71:24,47:24:855:47:1675:-120.937,0,-51.4084	0/1:5:2,3:2:72:3:108:-7.73212,0,-4.763	.:.:.:.:.:.:.:.	1/1:60:0,60:0:0:60:2148:-180.886,-18.0618,0	0/1:10:6,4:6:216:4:144:-9.52382,0,-15.6215	0/1:87:44,43:44:1576:43:1536:-99.9913,0,-106.175	0/1:20:10,10:10:351:10:360:-24.5644,0,-24.4665	0/1:13:6,7:6:216:7:252:-18.1342,0,-14.987	1/1:40:0,40:0:0:40:1435:-124.636,-12.0412,0	0/1:22:8,14:8:288:14:504:-35.275,0,-17.4602	0/1:70:29,41:29:1044:41:1459:-104.046,0,-69.3751	0/1:45:14,31:14:500:31:1116:-83.1186,0,-29.3246	1/1:75:0,75:0:0:75:2662:-227.719,-22.5773,0	0/1:149:71,78:71:2548:78:2796:-199.002,0,-177.17	0/1:7:4,3:4:144:3:108:-7.56536,0,-10.6744	1/1:59:0,59:0:0:59:2120:-174.201,-17.7608,0	1/1:61:0,61:0:0:61:2188:-189.274,-18.3628,0	0/1:6:4,2:4:144:2:68:-4.2297,0,-10.4002	0/1:76:40,36:40:1436:36:1296:-86.3701,0,-98.5613	1/1:4:0,4:0:0:4:144:-12.7816,-1.20412,0	0/1:4:2,2:2:72:2:72:-5.25649,0,-5.45101	0/1:21:8,13:8:288:13:468:-34.5483,0,-19.0612	0/1:41:24,17:24:864:17:608:-39.3843,0,-58.8402	1/1:83:0,83:0:0:83:2965:-254.908,-24.9855,0	1/1:6:0,6:0:0:6:207:-18.2777,-1.80618,0	1/1:163:0,163:0:0:163:5841:-510.445,-49.0679,0	1/1:106:2,104:2:72:104:3719:-311.91,-25.5992,0	0/1:43:18,25:18:639:25:896:-63.1177,0,-41.1749	1/1:37:1,36:1:21:36:1284:-108.347,-9.04152,0	1/1:116:1,115:1:36:115:4113:-351.914,-31.7319,0	0/1:134:89,45:89:3187:45:1616:-98.9736,0,-233.773	0/1:10:6,4:6:216:4:144:-9.48547,0,-15.5403	0/1:32:13,19:13:464:19:675:-46.3198,0,-28.9725	0/1:28:17,11:17:612:11:383:-25.5364,0,-44.4258	1/1:34:0,34:0:0:34:1220:-105.404,-10.235,0	1/1:65:0,65:0:0:65:2298:-190.096,-19.567,0	0/1:45:27,18:27:964:18:644:-39.6442,0,-66.3066	1/1:98:0,98:0:0:98:3505:-296.414,-29.5009,0	1/1:154:0,154:0:0:154:5511:-473.956,-46.3586,0	0/1:51:15,36:15:540:36:1292:-90.1412,0,-28.4731	0/1:71:27,44:27:972:44:1565:-106.111,0,-58.0275	0/1:17:2,15:2:72:15:540:-38.4068,0,-0.984019	1/1:62:0,62:0:0:62:2232:-187.323,-18.6639,0	1/1:46:0,46:0:0:46:1652:-135.342,-13.8474,0	0/1:143:53,90:53:1904:90:3232:-234.238,0,-120.899	1/1:46:0,46:0:0:46:1643:-141.397,-13.8474,0	1/1:40:0,40:0:0:40:1407:-121.136,-12.0412,0	0/1:13:6,7:6:216:7:248:-17.664,0,-15.0863	0/1:46:15,31:15:531:31:1112:-80.8472,0,-31.5576	0/1:18:5,13:5:180:13:468:-32.0649,0,-9.75697	0/1:33:15,18:15:532:18:647:-42.3225,0,-34.3884	0/1:34:9,25:9:324:25:896:-63.4327,0,-16.817	0/1:11:3,8:3:108:8:288:-21.2565,0,-6.09128	0/1:39:18,21:18:640:21:748:-50.9536,0,-42.8816	0/1:21:11,10:11:387:10:360:-25.0156,0,-27.5181	1/1:147:0,147:0:0:147:5232:-451.297,-44.2514,0	1/1:40:0,40:0:0:40:1432:-123.678,-12.0412,0
chr02	25933998	.	C	T	237868	PASS	AB=0.500895;ABP=3.15808;AC=56;AF=0.297872;AN=188;AO=10655;CIGAR=1X;DP=35647;DPB=35647;DPRA=1.69631;EPP=23131.4;EPPR=54233.4;GTI=0;LEN=1;MEANALT=1.08333;MQM=59.9946;MQMR=59.9947;NS=94;NUMALT=1;ODDS=10.0593;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=379287;QR=884775;RO=24982;RPL=3435;RPP=2922.67;RPPR=4414.4;RPR=7220;RUN=1;SAF=3434;SAP=2925.76;SAR=7221;SRF=8931;SRP=4409.44;SRR=16051;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:130:130,0:130:4581:0:0:0,-39.1339,-412.269	0/0:446:446,0:446:15723:0:0:0,-134.259,-1414.78	0/1:393:203,190:203:7180:190:6770:-491.07,0,-527.958	0/1:534:283,251:283:10025:251:8994:-648.687,0,-741.442	0/1:206:114,92:114:4039:92:3256:-231.249,0,-301.687	0/1:183:93,90:93:3312:90:3219:-234.843,0,-243.209	0/1:381:207,174:207:7311:174:6195:-442.957,0,-543.353	0/1:363:184,179:184:6545:179:6325:-460.072,0,-479.859	0/1:248:132,116:132:4652:116:4136:-297.756,0,-344.19	0/1:266:158,108:158:5612:108:3847:-266.353,0,-425.131	0/1:401:209,192:209:7425:192:6795:-490.916,0,-547.586	0/1:120:69,51:69:2421:51:1807:-126.787,0,-182.02	0/1:102:43,59:43:1527:59:2112:-159.644,0,-107.017	0/1:105:56,49:56:1990:49:1748:-125.996,0,-147.678	0/1:109:56,53:56:1995:53:1884:-137.026,0,-147.011	0/1:116:60,56:60:2113:56:2004:-145.714,0,-155.518	0/0:150:150,0:150:5328:0:0:0,-45.1545,-479.656	0/0:116:116,0:116:4103:0:0:0,-34.9195,-369.457	0/0:237:237,0:237:8400:0:0:0,-71.3441,-756.011	0/1:440:218,222:218:7748:222:7911:-579.565,0,-564.904	0/0:270:270,0:270:9544:0:0:0,-81.2781,-858.927	0/0:185:185,0:185:6555:0:0:0,-55.6905,-590.035	0/1:194:114,80:114:4008:80:2872:-200.317,0,-302.509	0/0:276:275,1:275:9779:1:34:0,-79.6854,-876.659	0/0:211:211,0:211:7440:0:0:0,-63.5173,-669.65	0/0:803:802,1:802:28318:1:36:0,-238.129,-2544.21	0/0:623:620,2:620:21901:2:72:0,-180.664,-1963.77	0/0:66:66,0:66:2304:0:0:0,-19.868,-207.618	0/1:637:337,300:337:11872:300:10726:-773.49,0,-876.597	0/1:418:210,208:210:7411:208:7405:-540.67,0,-541.212	0/1:528:242,286:242:8578:286:10216:-760.424,0,-613.079	0/1:990:553,437:553:19676:437:15525:-1098.94,0,-1472.36	0/0:759:756,3:756:26894:3:108:0,-218.407,-2409.63	0/0:830:828,2:828:29303:2:68:0,-243.397,-2629.98	0/0:1649:1647,2:1647:58628:2:72:0,-489.562,-5267.62	0/1:1257:621,635:621:22113:635:22609:-1655.78,0,-1611.16	0/1:291:147,144:147:5215:144:5130:-374.242,0,-381.891	0/1:369:165,204:165:5851:204:7244:-540.934,0,-415.625	0/1:488:229,259:229:8135:259:9274:-687.723,0,-585.269	0/0:744:743,1:743:26357:1:36:0,-220.368,-2367.8	0/0:449:447,2:447:15797:2:72:0,-128.326,-1414.6	0/1:220:98,122:98:3456:122:4332:-323.83,0,-245.028	0/1:352:175,177:175:6199:177:6299:-461.042,0,-452.047	0/1:94:60,34:60:2128:34:1207:-80.6385,0,-163.489	0/1:99:41,58:41:1440:58:2048:-154.789,0,-100.091	0/0:262:261,1:261:9230:1:36:0,-75.2716,-827.082	0/1:270:137,133:137:4848:133:4733:-344.424,0,-355.197	0/1:459:214,245:214:7576:245:8730:-647.52,0,-543.71	0/1:248:100,148:100:3548:148:5253:-398.252,0,-244.873	0/0:230:230,0:230:8157:0:0:0,-69.2369,-734.148	0/1:390:215,175:215:7595:175:6235:-443.844,0,-566.19	0/1:1137:582,555:582:20580:555:19783:-1437.73,0,-1509.45	0/0:395:392,3:392:13931:3:108:0,-108.832,-1243.49	0/0:153:152,1:152:5381:1:36:0,-42.4593,-480.826	0/1:1147:596,551:596:21161:551:19566:-1415.21,0,-1558.68	0/1:394:204,190:204:7250:190:6738:-487.893,0,-533.95	0/0:141:140,1:140:4934:1:36:0,-38.847,-440.614	0/1:880:396,484:396:14040:484:17233:-1285.7,0,-998.475	0/1:994:513,480:513:18203:480:17052:-1235.03,0,-1338.58	0/1:152:79,73:79:2780:73:2572:-185.971,0,-204.682	0/0:176:175,1:175:6170:1:36:0,-49.383,-551.808	0/0:733:733,0:733:25982:0:0:0,-220.655,-2337.54	0/0:168:167,0:167:5876:0:0:0,-50.272,-528.745	0/0:402:401,1:401:14213:1:36:0,-117.416,-1275.34	0/1:128:41,87:41:1460:87:3116:-242.135,0,-93.1642	0/0:270:270,0:270:9525:0:0:0,-81.2781,-857.216	0/0:472:468,4:468:16599:4:140:0,-129.142,-1480.64	0/1:216:72,144:72:2552:144:5143:-397.99,0,-164.909	0/1:345:194,151:194:6886:151:5377:-380.208,0,-515.957	0/1:199:93,106:93:3272:106:3784:-280.852,0,-234.794	0/1:136:62,74:62:2181:74:2625:-195.556,0,-155.615	0/0:854:852,1:852:30274:1:36:0,-253.54,-2720.16	0/0:220:220,0:220:7786:0:0:0,-66.2266,-700.776	0/1:162:63,99:63:2217:99:3525:-268.692,0,-151.024	0/0:664:663,0:663:23315:0:0:0,-199.583,-2097.4	0/0:366:366,0:366:12926:0:0:0,-110.177,-1163.17	0/1:359:177,181:177:6286:181:6438:-471.38,0,-457.707	0/1:271:138,133:138:4878:133:4735:-344.732,0,-357.596	0/1:828:337,490:337:11960:490:17449:-1320.73,0,-826.952	0/0:287:286,0:286:10086:0:0:0,-86.0946,-907.325	0/0:256:255,0:255:9004:0:0:0,-76.7626,-809.987	0/1:589:291,298:291:10209:298:10655:-781.552,0,-741.446	0/0:181:181,0:181:6377:0:0:0,-54.4864,-574.028	0/0:105:105,0:105:3733:0:0:0,-31.6081,-336.171	0/1:162:89,73:89:3113:73:2595:-185.03,0,-231.631	0/1:208:103,105:103:3639:105:3739:-274.098,0,-265.101	0/1:70:28,42:28:985:42:1499:-114.132,0,-67.8894	0/1:112:58,54:58:2050:54:1907:-138.192,0,-151.055	0/1:136:71,65:71:2531:65:2312:-167.401,0,-187.101	0/1:446:224,222:224:7966:222:7897:-576.499,0,-582.696	0/1:762:391,371:391:13862:371:13207:-959.052,0,-1017.99	0/1:114:41,73:41:1447:73:2537:-194.26,0,-96.2077	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:142:142,0:142:4985:0:0:0,-42.7463,-448.802
chr02	25952947	.	GTTT	GTTC,CTTC	138152	PASS	AB=0.423159,0.571688;ABP=172.205,150.274;AC=145,39;AF=0.788043,0.211957;AN=184;AO=4731,1895;CIGAR=3M1X,1X2M1X;DP=6648;DPB=6653.25;DPRA=36.5165,1.67983;EPP=10276.2,4117.95;EPPR=0;GTI=5;LEN=1,4;MEANALT=1.68132,2.37209;MQM=59.97,59.9478;MQMR=0;NS=92;NUMALT=2;ODDS=0.410211;PAIRED=0,0;PAIREDR=0;PAO=0,21;PQA=0,735;PQR=0;PRO=0;QA=166111,66004;QR=0;RO=0;RPL=4731,1895;RPP=10276.2,4117.95;RPPR=0;RPR=0,0;RUN=1,1;SAF=4731,1895;SAP=10276.2,4117.95;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24,0:0:0:24,0:852,0:-77.0004,-7.22472,0,-77.0004,-7.22472,-77.0004	1/1:41:0,41,0:0:0:41,0:1437,0:-129.624,-12.3422,0,-129.624,-12.3422,-129.624	1/1:43:0,43,0:0:0:43,0:1523,0:-136.341,-12.9443,0,-136.341,-12.9443,-136.341	1/2:171:0,104,66:0:0:104,66:3690,2305:-488.129,-187.483,-156.176,-300.637,0,-280.769	2/2:2:0,0,2:0:0:0,2:0,65:-6.17303,-6.17303,-6.17303,-0.60206,-0.60206,0	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/2:121:0,54,67:0:0:54,67:1904,2322:-344.101,-189.073,-172.817,-155.378,0,-135.209	1/1:29:0,29,0:0:0:29,0:1024,0:-92.1134,-8.72987,0,-92.1134,-8.72987,-92.1134	1/1:20:0,20,0:0:0:20,0:695,0:-62.5122,-6.0206,0,-62.5122,-6.0206,-62.5122	1/2:59:0,19,40:0:0:19,40:669,1389:-167.689,-113.225,-107.506,-54.8144,0,-42.7732	1/2:58:0,29,29:0:0:29,29:1008,1017:-165.061,-83.1114,-74.3815,-82.2982,0,-73.5683	1/1:50:0,50,0:0:0:50,0:1767,0:-159.041,-15.0515,0,-159.041,-15.0515,-159.041	1/1:29:0,29,0:0:0:29,0:1018,0:-91.9304,-8.72987,0,-91.9304,-8.72987,-91.9304	1/2:67:0,36,31:0:0:36,31:1275,1071:-191.211,-87.3453,-76.5082,-104.215,0,-94.8833	1/2:69:0,22,47:0:0:22,47:779,1637:-196.925,-133.468,-126.845,-63.8094,0,-49.661	1/2:56:0,21,35:0:0:21,35:748,1195:-158.283,-97.31,-90.9883,-61.3237,0,-50.7876	1/1:41:0,41,0:0:0:41,0:1460,0:-131.696,-12.3422,0,-131.696,-12.3422,-131.696	1/1:23:0,23,0:0:0:23,0:807,0:-72.9492,-6.92369,0,-72.9492,-6.92369,-72.9492	1/1:15:0,15,0:0:0:15,0:521,0:-47.2163,-4.51545,0,-47.2163,-4.51545,-47.2163	1/2:136:0,67,68:0:0:67,68:2296,2354:-377.658,-191.288,-171.119,-186.355,0,-165.885	1/1:102:0,101,1:0:0:101,1:3587,29:-322.748,-30.404,0,-320.44,-27.8054,-320.139	1/1:80:0,78,2:0:0:78,2:2708,69:-243.619,-23.4803,0,-238.013,-17.5299,-237.411	1/2:94:0,33,61:0:0:33,61:1171,2159:-271.257,-175.849,-165.915,-95.403,0,-77.0402	1/1:25:0,25,0:0:0:25,0:883,0:-79.7875,-7.52575,0,-79.7875,-7.52575,-79.7875	1/1:16:0,16,0:0:0:16,0:549,0:-49.7324,-4.81648,0,-49.7324,-4.81648,-49.7324	1/1:219:0,218,0:0:0:218,0:7593,0:-683.061,-65.6245,0,-683.061,-65.6245,-683.061	1/1:171:0,171,0:0:0:171,0:6006,0:-540.654,-51.4761,0,-540.654,-51.4761,-540.654	1/1:34:0,34,0:0:0:34,0:1216,0:-109.747,-10.235,0,-109.747,-10.235,-109.747	1/2:310:0,131,177:0:0:131,177:4638,6161:-878.833,-501.034,-461.599,-377.859,0,-324.577	1/2:113:0,34,78:0:0:34,78:1194,2724:-318.743,-221.565,-211.33,-97.1694,0,-73.6891	1/2:56:0,33,23:0:0:33,23:1167,790:-159.547,-64.4919,-54.5579,-95.4024,0,-88.4787	1/2:5:0,3,2:0:0:3,2:100,67:-13.8539,-5.76078,-4.85769,-8.42735,0,-7.82529	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:2:0,2,0:0:0:2,0:63,0:-5.98315,-0.60206,0,-5.98315,-0.60206,-5.98315	1/1:7:0,7,0:0:0:7,0:243,0:-22.2075,-2.10721,0,-22.2075,-2.10721,-22.2075	1/1:9:0,9,0:0:0:9,0:316,0:-28.7789,-2.70927,0,-28.7789,-2.70927,-28.7789	1/2:203:0,92,108:0:0:92,108:3206,3802:-570.276,-309.555,-281.86,-260.753,0,-228.241	1/2:115:0,42,73:0:0:42,73:1461,2516:-323.152,-204.36,-191.717,-118.78,0,-96.8045	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	.:.:.:.:.:.:.:.	1/1:111:0,111,0:0:0:111,0:3860,0:-347.595,-33.4143,0,-347.595,-33.4143,-347.595	1/2:19:0,11,8:0:0:11,8:379,285:-54.3644,-23.5864,-20.2751,-31.1292,0,-28.721	1/2:95:0,46,49:0:0:46,49:1591,1685:-266.464,-137.182,-123.335,-129.627,0,-114.876	1/2:62:0,29,33:0:0:29,33:976,1177:-175.37,-96.3045,-87.5747,-79.4115,0,-69.4775	1/2:65:0,32,33:0:0:32,33:1081,1124:-178.826,-91.2076,-81.5747,-87.6362,0,-77.7022	1/1:51:0,51,0:0:0:51,0:1811,0:-163.271,-15.3525,0,-163.271,-15.3525,-163.271	1/1:33:0,33,0:0:0:33,0:1168,0:-105.427,-9.93399,0,-105.427,-9.93399,-105.427	1/2:170:0,73,95:0:0:73,95:2561,3287:-475.542,-267.136,-245.161,-208.43,0,-179.832	1/2:55:0,12,43:0:0:12,43:428,1491:-156.427,-121.535,-117.923,-35.2464,0,-22.3022	1/1:109:0,109,0:0:0:109,0:3830,0:-344.899,-32.8123,0,-344.899,-32.8123,-344.899	1/2:68:0,23,44:0:0:23,44:807,1519:-189.066,-123.389,-116.466,-65.666,0,-52.4207	1/2:11:0,5,6:0:0:5,6:171,208:-31.1292,-17.2528,-15.7477,-14.2203,0,-12.4141	1/1:74:0,74,0:0:0:74,0:2604,0:-234.608,-22.2762,0,-234.608,-22.2762,-234.608	1/1:75:0,75,0:0:0:75,0:2670,0:-240.545,-22.5773,0,-240.545,-22.5773,-240.545	.:.:.:.:.:.:.:.	1/2:127:0,47,78:0:0:47,78:1655,2715:-355.534,-220.795,-206.647,-134.767,0,-111.287	1/1:21:0,21,0:0:0:21,0:744,0:-67.2843,-6.32163,0,-67.2843,-6.32163,-67.2843	1/2:13:0,7,6:0:0:7,6:240,213:-37.1883,-17.7101,-15.6029,-19.8275,0,-18.0213	1/2:20:0,8,12:0:0:8,12:288,424:-58.3297,-34.884,-32.4757,-23.8025,0,-20.1901	1/2:70:0,37,33:0:0:37,33:1290,1156:-198.964,-94.0531,-82.9149,-104.901,0,-94.9668	1/1:113:0,113,0:0:0:113,0:3997,0:-359.922,-34.0164,0,-359.922,-34.0164,-359.922	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:226:0,223,1:0:0:223,1:7800,31:-701.737,-67.1297,0,-699.249,-64.6395,-698.948	1/1:113:0,113,0:0:0:113,0:3979,0:-358.304,-34.0164,0,-358.304,-34.0164,-358.304	1/2:71:0,25,46:0:0:25,46:882,1610:-203.161,-131.341,-123.815,-72.172,0,-58.3247	1/1:83:0,83,0:0:0:83,0:2917,0:-262.767,-24.9855,0,-262.767,-24.9855,-262.767	1/1:168:0,167,1:0:0:167,1:5794,35:-521.236,-50.272,0,-518.388,-47.0744,-518.087	1/2:157:0,41,115:0:0:41,115:1416,3962:-436.958,-321.912,-309.57,-115.138,0,-80.5199	1/2:44:0,17,27:0:0:17,27:593,954:-126.274,-78.0477,-72.9302,-48.5772,0,-40.4494	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:27:0,11,16:0:0:11,16:396,549:-77.2362,-44.9177,-41.6064,-32.6714,0,-27.8549	1/1:5:0,5,0:0:0:5,0:172,0:-15.803,-1.50515,0,-15.803,-1.50515,-15.803	1/1:79:0,79,0:0:0:79,0:2762,0:-248.818,-23.7814,0,-248.818,-23.7814,-248.818	1/1:32:0,32,0:0:0:32,0:1077,0:-97.2293,-9.63296,0,-97.2293,-9.63296,-97.2293	1/1:84:0,82,2:0:0:82,2:2878,71:-258.901,-24.6845,0,-253.116,-18.5445,-252.514	1/1:166:0,166,0:0:0:166,0:5868,0:-528.235,-49.971,0,-528.235,-49.971,-528.235	1/1:14:0,14,0:0:0:14,0:477,0:-42.8944,-4.21442,0,-42.8944,-4.21442,-42.8944	1/1:40:0,40,0:0:0:40,0:1389,0:-124.958,-12.0412,0,-124.958,-12.0412,-124.958	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:97:0,96,0:0:0:96,0:3389,0:-304.867,-28.8989,0,-304.867,-28.8989,-304.867	1/1:104:0,104,0:0:0:104,0:3673,0:-330.776,-31.3071,0,-330.776,-31.3071,-330.776	1/2:197:0,82,113:0:0:82,113:2896,3961:-558.181,-322.341,-297.656,-235.861,0,-201.844	1/1:61:0,61,0:0:0:61,0:2148,0:-193.585,-18.3628,0,-193.585,-18.3628,-193.585	1/1:83:0,83,0:0:0:83,0:2963,0:-266.903,-24.9855,0,-266.903,-24.9855,-266.903	1/2:52:0,29,23:0:0:29,23:984,801:-144.916,-65.1258,-56.396,-79.7753,0,-72.8516	1/2:119:0,57,61:0:0:57,61:2018,2151:-339.603,-175.223,-158.064,-164.462,0,-146.099	1/1:7:0,7,0:0:0:7,0:244,0:-22.2994,-2.10721,0,-22.2994,-2.10721,-22.2994	1/1:38:0,38,0:0:0:38,0:1335,0:-120.449,-11.4391,0,-120.449,-11.4391,-120.449	1/1:43:0,43,0:0:0:43,0:1532,0:-138.173,-12.9443,0,-138.173,-12.9443,-138.173	1/2:38:0,17,21:0:0:17,21:608,749:-110.632,-61.0545,-55.9369,-49.5748,0,-43.2532	1/2:130:0,54,76:0:0:54,76:1889,2673:-371.28,-217.599,-201.344,-153.691,0,-130.812	1/2:56:0,13,43:0:0:13,43:464,1501:-160.267,-122.438,-118.524,-38.1841,0,-25.2398	1/1:169:0,169,0:0:0:169,0:5930,0:-533.82,-50.8741,0,-533.82,-50.8741,-533.82	1/1:96:0,95,0:0:0:95,0:3345,0:-301.018,-28.5979,0,-301.018,-28.5979,-301.018
chr02	25978323	.	A	T	35754.1	PASS	AB=0.505183;ABP=4.04564;AC=57;AF=0.303191;AN=188;AO=2253;CIGAR=1X;DP=7280;DPB=7280;DPRA=1.07036;EPP=4895.34;EPPR=10899.5;GTI=1;LEN=1;MEANALT=1.0678;MQM=48.0994;MQMR=57.1062;NS=94;NUMALT=1;ODDS=1.76461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78821;QR=179063;RO=5018;RPL=0;RPP=4895.34;RPPR=10899.5;RPR=2253;RUN=1;SAF=0;SAP=4895.34;SAR=2253;SRF=0;SRP=10899.5;SRR=5018;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.585	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.654	0/1:58:23,35:23:820:35:1176:-87.7516,0,-56.584	0/1:143:60,83:60:2140:83:2918:-217.954,0,-149.691	0/1:35:17,18:17:612:18:639:-46.9169,0,-44.8444	0/1:34:12,22:12:432:22:745:-55.932,0,-28.9458	0/1:127:60,67:60:2143:67:2343:-171.477,0,-154.737	0/1:127:80,47:80:2856:47:1641:-107.822,0,-218.514	0/1:56:28,28:28:995:28:983:-70.5738,0,-72.7618	0/1:88:42,44:42:1493:44:1545:-111.752,0,-108.332	0/1:76:47,29:47:1675:29:1031:-69.7761,0,-128.141	0/1:64:26,38:26:932:38:1355:-100.744,0,-64.6433	0/1:72:28,44:28:988:44:1534:-114.688,0,-67.2702	0/1:84:45,39:45:1620:39:1357:-95.6323,0,-120.667	0/1:62:31,31:31:1112:31:1078:-78.0558,0,-81.7064	0/1:41:23,18:23:824:18:631:-44.388,0,-61.985	0/0:61:61,0:61:2184:0:0:0,-18.3628,-195.867	0/0:58:58,0:58:2044:0:0:0,-17.4597,-183.633	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.435	0/1:151:63,88:63:2235:88:3070:-229.815,0,-155.885	0/0:95:95,0:95:3386:0:0:0,-28.5978,-304.605	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.81	0/1:40:25,15:25:896:15:516:-33.6364,0,-68.9048	0/0:93:93,0:93:3327:0:0:0,-27.9958,-299.431	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.154	0/0:196:196,0:196:6962:0:0:0,-59.0019,-625.968	0/0:164:164,0:164:5840:0:0:0,-49.3689,-524.924	0/0:27:26,0:26:923:0:0:0,-7.82678,-82.9966	0/1:209:98,111:98:3520:111:3884:-285.208,0,-253.777	0/1:101:67,34:67:2376:34:1179:-73.331,0,-183.276	0/1:91:46,45:46:1634:45:1596:-115.21,0,-119.829	0/1:2:1,1:1:36:1:36:-2.97137,0,-2.9945	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0196	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.535	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3068	0/1:2:1,1:1:36:1:36:-2.95656,0,-2.99621	0/1:184:96,88:96:3440:88:3094:-222.313,0,-254.348	0/1:115:58,57:58:2048:57:1996:-143.668,0,-149.192	0/1:99:42,56:42:1496:56:1976:-145.018,0,-104.846	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/0:130:130,0:130:4664:0:0:0,-39.1339,-418.922	0/1:40:29,11:29:1036:11:388:-22.9946,0,-81.2972	0/1:94:40,54:40:1436:54:1864:-137.985,0,-101.112	0/1:46:25,21:25:896:21:743:-52.8302,0,-67.0394	0/1:69:40,29:40:1440:29:1008:-69.6178,0,-108.996	0/0:86:86,0:86:3059:0:0:0,-25.8886,-275.372	0/1:61:18,43:18:648:43:1506:-116.061,0,-40.0881	0/1:153:78,75:78:2760:75:2620:-188.406,0,-202.326	0/1:69:39,30:39:1387:30:1055:-74.0991,0,-104.327	0/0:70:69,1:69:2476:1:32:0,-17.8789,-219.782	0/1:164:100,64:100:3559:64:2271:-154.634,0,-270.836	0/1:11:5,6:5:180:6:216:-16.3954,0,-13.2395	0/0:131:131,0:131:4692:0:0:0,-39.4349,-421.347	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.487	0/1:17:9,8:9:324:8:276:-19.8323,0,-24.2239	0/1:101:50,51:50:1778:51:1780:-128.669,0,-129.756	0/0:29:29,0:29:1031:0:0:0,-8.72987,-92.9615	1/1:3:0,3:0:0:3:108:-10.0351,-0.90309,0	0/1:15:3,12:3:108:12:432:-34.6071,0,-5.55972	0/1:63:37,26:37:1324:26:911:-62.8292,0,-100.442	0/0:137:136,0:136:4835:0:0:0,-40.9401,-434.758	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7881	0/0:116:116,0:116:4143:0:0:0,-34.9195,-372.912	0/0:151:151,0:151:5375:0:0:0,-45.4555,-483.57	0/1:60:28,32:28:1004:32:1128:-83.0205,0,-72.505	0/0:44:43,1:43:1532:1:36:0,-9.6968,-133.386	0/0:129:123,6:123:4408:6:208:0,-19.8409,-377.595	0/1:72:28,44:28:1008:44:1542:-116.093,0,-69.3498	0/1:24:13,11:13:468:11:383:-27.3576,0,-35.2163	0/1:92:38,54:38:1359:54:1853:-137.634,0,-94.7894	0/1:102:47,55:47:1679:55:1924:-142.13,0,-120.663	0/0:18:18,0:18:640:0:0:0,-5.41854,-56.349	0/0:117:117,0:117:4144:0:0:0,-35.2205,-372.569	0/1:57:22,35:22:784:35:1182:-88.6055,0,-53.6472	0/0:150:150,0:150:5327:0:0:0,-45.1545,-478.928	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.053	0/1:95:45,50:45:1607:50:1752:-127.831,0,-115.016	0/1:89:36,51:36:1288:51:1796:-133.237,0,-89.4559	0/1:6:1,5:1:36:5:176:-13.8178,0,-1.78839	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.181	0/0:73:73,0:73:2605:0:0:0,-21.9752,-233.987	0/1:228:108,120:108:3875:120:4186:-305.972,0,-279.201	0/0:101:101,0:101:3603:0:0:0,-30.404,-324.104	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.351	0/1:61:36,24:36:1288:24:822:-55.5205,0,-97.2894	0/1:130:69,61:69:2484:61:2148:-152.84,0,-184.501	0/1:36:24,12:24:852:12:416:-26.5669,0,-66.0927	0/1:75:42,33:42:1480:33:1149:-80.091,0,-110.58	0/1:76:34,42:34:1216:42:1492:-109.946,0,-86.7652	0/1:54:32,22:32:1144:22:780:-53.6819,0,-86.8996	0/1:148:73,75:73:2612:75:2624:-187.194,0,-190.541	0/1:69:22,47:22:792:47:1655:-127.563,0,-50.8246	0/0:77:77,0:77:2729:0:0:0,-23.1793,-245.648	0/0:79:78,0:78:2753:0:0:0,-23.4803,-247.586
chr02	26001038	.	T	A	330760	PASS	AB=0.507761;ABP=9.65065;AC=132;AF=0.702128;AN=188;AO=13469;CIGAR=1X;DP=19728;DPB=19728;DPRA=0;EPP=8563.85;EPPR=4659.23;GTI=0;LEN=1;MEANALT=1.05319;MQM=46.2633;MQMR=59.9591;NS=94;NUMALT=1;ODDS=18.142;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=482329;QR=223582;RO=6254;RPL=84;RPP=28525.5;RPPR=13272.5;RPR=13385;RUN=1;SAF=10462;SAP=8963.14;SAR=3007;SRF=4994;SRP=4844.12;SRR=1260;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1216:-108.131,-10.235,0	1/1:192:1,191:1:36:191:6853:-604.657,-54.1995,0	0/1:99:56,43:56:1986:43:1544:-107.157,0,-149.211	0/1:360:192,168:192:6818:168:6006:-419.313,0,-505.316	0/1:95:42,53:42:1495:53:1900:-140.443,0,-106.246	0/1:60:21,39:21:752:39:1404:-105.194,0,-49.9445	0/1:272:125,147:125:4476:147:5276:-385.259,0,-321.101	0/1:170:83,87:83:2963:87:3100:-224.685,0,-215.728	0/1:127:69,58:69:2461:58:2072:-145.631,0,-183.512	0/1:219:104,115:104:3724:115:4116:-296.451,0,-269.432	0/1:402:174,227:174:6218:227:8148:-603.47,0,-438.645	0/1:80:36,44:36:1283:44:1580:-114.388,0,-91.6902	0/1:63:31,32:31:1116:32:1148:-82.7739,0,-81.7868	0/1:96:40,56:40:1436:56:2000:-149.913,0,-100.639	0/1:124:53,71:53:1900:71:2542:-187.813,0,-133.95	0/1:60:28,32:28:1008:32:1152:-84.7941,0,-72.9746	1/1:52:0,52:0:0:52:1864:-164.906,-15.6536,0	1/1:62:0,62:0:0:62:2214:-195.703,-18.6639,0	1/1:237:0,237:0:0:237:8511:-752.508,-71.3441,0	0/1:353:202,151:202:7204:151:5412:-372.192,0,-542.153	1/1:83:0,83:0:0:83:2965:-264.926,-24.9855,0	1/1:130:0,130:0:0:130:4644:-409.217,-39.1339,0	0/1:98:49,49:49:1739:49:1756:-124.851,0,-127.293	1/1:61:0,61:0:0:61:2184:-195.051,-18.3628,0	1/1:75:0,75:0:0:75:2692:-240.209,-22.5773,0	1/1:501:2,499:2:72:499:17795:-1565.22,-143.979,0	1/1:163:0,163:0:0:163:5864:-523.023,-49.0679,0	1/1:42:0,42:0:0:42:1512:-135.061,-12.6433,0	0/1:439:245,194:245:8763:194:6926:-476.623,0,-656.479	0/1:98:43,55:43:1531:55:1976:-147.221,0,-108.581	0/1:218:119,99:119:4244:99:3548:-247.337,0,-316.004	0/1:452:248,204:248:8899:204:7305:-514.267,0,-664.824	1/1:497:0,497:0:0:497:17803:-1580.18,-149.612,0	1/1:114:0,114:0:0:114:4062:-356.655,-34.3174,0	1/1:542:0,542:0:0:542:19398:-1716.12,-163.158,0	0/1:512:238,274:238:8514:274:9848:-716.288,0,-612.132	0/1:347:152,195:152:5376:195:6983:-509.99,0,-379.52	0/1:99:50,49:50:1796:49:1764:-127.802,0,-132.12	0/1:383:202,181:202:7236:181:6496:-459.482,0,-535.96	1/1:110:0,110:0:0:110:3933:-349.121,-33.1133,0	1/1:94:1,93:1:36:93:3329:-292.865,-24.6985,0	0/1:188:102,86:102:3641:86:3092:-218.673,0,-271.3	0/1:129:60,69:60:2148:69:2464:-179.271,0,-154.755	0/1:121:51,70:51:1815:70:2508:-185.292,0,-127.205	0/1:125:70,55:70:2500:55:1968:-136.85,0,-187.579	1/1:116:0,116:0:0:116:4152:-363.612,-34.9195,0	0/1:107:43,64:43:1540:64:2300:-171.729,0,-106.683	0/1:285:154,131:154:5503:131:4688:-328.674,0,-409.603	0/1:142:46,96:46:1635:96:3444:-262.503,0,-104.673	1/1:279:0,279:0:0:279:9996:-881.606,-83.9874,0	0/1:328:154,174:154:5503:174:6216:-452.083,0,-396.659	0/1:565:333,232:333:11917:232:8314:-570.362,0,-902.303	1/1:120:0,120:0:0:120:4307:-381.285,-36.1236,0	1/1:88:0,88:0:0:88:3152:-279.133,-26.4906,0	0/1:465:223,242:223:7998:242:8678:-628.355,0,-579.859	0/1:84:50,34:50:1784:34:1224:-84.3139,0,-135.556	1/1:84:2,82:2:68:82:2935:-251.927,-18.8288,0	0/1:354:171,183:171:6118:183:6550:-480.203,0,-444.155	0/1:664:265,399:265:9503:399:14318:-1080.43,0,-655.341	0/1:86:46,40:46:1648:40:1440:-102.657,0,-122.72	1/1:206:1,205:1:36:205:7352:-644.185,-58.4139,0	1/1:308:0,308:0:0:308:11032:-983.585,-92.7172,0	1/1:183:0,183:0:0:183:6503:-572.397,-55.0885,0	1/1:243:1,242:1:32:242:8680:-764.881,-69.951,0	0/1:73:37,36:37:1332:36:1280:-92.7473,0,-98.2072	1/1:113:0,113:0:0:113:4048:-357.579,-34.0164,0	1/1:250:2,248:2:72:248:8864:-772.246,-68.4208,0	0/1:147:85,62:85:3039:62:2210:-152.389,0,-229.488	0/1:294:149,145:149:5352:145:5196:-373.246,0,-393.308	0/1:86:44,42:44:1575:42:1496:-104.432,0,-116.152	0/1:208:95,112:95:3408:112:4007:-290.921,0,-244.277	1/1:649:0,649:0:0:649:23211:-2070.99,-195.368,0	1/1:82:0,82:0:0:82:2930:-258.129,-24.6845,0	0/1:71:34,37:34:1216:37:1320:-96.1856,0,-88.3734	1/1:161:0,161:0:0:161:5728:-508.516,-48.4658,0	1/1:290:0,290:0:0:290:10377:-917.399,-87.2987,0	0/1:84:42,42:42:1500:42:1504:-107.972,0,-110.008	0/1:125:66,59:66:2364:59:2107:-148.758,0,-175.39	0/1:522:251,269:251:8986:269:9644:-691.755,0,-651.825	1/1:124:0,123:0:0:123:4412:-393.342,-37.0267,0	1/1:98:1,97:1:36:97:3482:-304.799,-25.9027,0	0/1:396:214,182:214:7621:182:6500:-454.481,0,-565.703	1/1:200:0,200:0:0:200:7172:-633.062,-60.206,0	1/1:142:0,142:0:0:142:5080:-445.989,-42.7463,0	0/1:179:84,95:84:3000:95:3400:-245.932,0,-216.302	0/1:277:129,148:129:4591:148:5303:-383.689,0,-329.952	0/1:33:18,15:18:648:15:536:-38.0013,0,-48.7179	0/1:39:14,25:14:504:25:900:-68.6846,0,-33.9579	0/1:50:22,28:22:792:28:1004:-73.9668,0,-56.5542	0/1:405:170,235:170:6099:235:8444:-627.555,0,-427.092	0/1:686:328,358:328:11728:358:12840:-929.726,0,-848.852	0/1:147:91,56:91:3248:56:2000:-131.185,0,-248.291	1/1:66:0,66:0:0:66:2360:-206.885,-19.868,0	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chr02	26084918	.	C	T	56189.4	PASS	AB=0.527773;ABP=43.6584;AC=55;AF=0.295699;AN=186;AO=3207;CIGAR=1X;DP=10447;DPB=10447;DPRA=0.990293;EPP=6837.24;EPPR=15426;GTI=0;LEN=1;MEANALT=1.10169;MQM=59.9822;MQMR=59.9917;NS=93;NUMALT=1;ODDS=2.42903;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114873;QR=258613;RO=7230;RPL=3192;RPP=6837.24;RPPR=15426;RPR=15;RUN=1;SAF=0;SAP=6966.92;SAR=3207;SRF=0;SRP=15702.8;SRR=7230;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.247	0/0:175:175,0:175:6253:0:0:0,-52.6802,-562.864	0/1:156:66,90:66:2364:90:3221:-243.15,0,-166.058	0/1:281:144,137:144:5150:137:4903:-356.83,0,-378.424	0/1:108:61,47:61:2184:47:1688:-119.696,0,-164.315	0/1:66:31,35:31:1116:35:1256:-93.4773,0,-80.8837	0/1:153:65,88:65:2314:88:3156:-238.207,0,-162.462	0/1:195:105,89:105:3718:89:3190:-228.563,0,-276.062	0/1:103:43,60:43:1544:60:2145:-162.31,0,-108.247	0/1:100:45,55:45:1620:55:1966:-147.112,0,-115.987	0/1:52:31,20:31:1112:20:701:-47.7007,0,-84.679	0/1:60:30,30:30:1076:30:1069:-78.4592,0,-79.0911	0/1:46:23,23:23:828:23:828:-60.9967,0,-60.9967	0/1:86:48,38:48:1707:38:1368:-97.5322,0,-128.027	0/1:57:22,35:22:784:35:1260:-96.5468,0,-53.7252	0/1:44:20,24:20:716:24:848:-63.393,0,-51.5224	0/0:80:80,0:80:2863:0:0:0,-24.0824,-257.907	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:215:119,95:119:4268:95:3404:-241.794,0,-319.517	0/0:163:163,0:163:5834:0:0:0,-49.0679,-525.171	0/0:165:165,0:165:5905:0:0:0,-49.6699,-531.558	0/1:141:57,84:57:2040:84:3009:-228.576,0,-141.427	0/0:103:103,0:103:3672:0:0:0,-31.0061,-330.682	0/0:89:89,0:89:3169:0:0:0,-26.7917,-285.434	0/0:407:407,0:407:14580:0:0:0,-122.519,-1311.94	0/0:241:241,0:241:8616:0:0:0,-72.5482,-775.434	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:398:207,191:207:7415:191:6844:-496.219,0,-547.585	0/1:216:93,123:93:3324:123:4404:-331.51,0,-234.356	0/1:69:27,42:27:968:42:1496:-114.163,0,-66.6663	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:182:87,95:87:3116:95:3404:-251.787,0,-225.879	0/1:256:102,154:102:3641:154:5523:-420.13,0,-250.83	0/1:61:19,42:19:680:42:1504:-117.292,0,-43.1663	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:196:196,0:196:6991:0:0:0,-59.0019,-629.257	0/1:33:17,16:17:612:16:576:-42.241,0,-45.4794	0/1:198:95,103:95:3416:103:3666:-270.538,0,-248.049	0/1:52:24,28:24:860:28:1000:-74.6612,0,-62.0683	0/1:49:27,22:27:968:22:778:-55.5912,0,-72.6869	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/1:126:48,78:48:1711:78:2800:-214.31,0,-116.345	0/1:237:103,134:103:3674:134:4781:-359.016,0,-259.516	0/1:125:65,60:65:2324:60:2146:-155.777,0,-171.791	0/0:153:151,0:151:5416:0:0:0,-45.4555,-487.197	0/1:184:94,90:94:3376:90:3236:-236.071,0,-248.665	0/1:4:2,2:2:63:2:72:-5.6326,0,-4.77903	0/0:184:184,0:184:6587:0:0:0,-55.3895,-592.91	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:134:76,58:76:2736:58:2076:-146.772,0,-206.144	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.99	.:.:.:.:.:.:.:.	0/1:26:12,14:12:424:14:500:-37.5094,0,-30.6696	0/1:101:44,57:44:1568:57:2044:-153.828,0,-111.008	0/0:130:130,0:130:4650:0:0:0,-39.1339,-418.661	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:209:208,0:208:7450:0:0:0,-62.6142,-670.183	0/0:213:212,0:212:7577:0:0:0,-63.8184,-681.609	0/1:64:25,39:25:896:39:1400:-107.033,0,-61.6944	0/0:104:102,2:102:3635:2:72:0,-24.4704,-320.519	0/0:141:139,1:139:4941:1:36:0,-38.9058,-441.241	0/1:235:78,157:78:2792:157:5631:-436.167,0,-180.778	0/1:19:9,10:9:320:10:360:-27.0247,0,-23.4228	0/1:128:68,60:68:2424:60:2156:-155.775,0,-179.881	0/1:105:60,45:60:2160:45:1616:-114.122,0,-163.059	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:185:185,0:185:6620:0:0:0,-55.6905,-595.877	0/1:61:27,34:27:964:34:1210:-90.8435,0,-68.714	0/0:202:202,0:202:7237:0:0:0,-60.8081,-651.381	0/0:202:200,1:200:7160:1:36:0,-57.2686,-640.856	0/1:176:86,90:86:3092:90:3240:-238.839,0,-225.525	0/1:115:49,66:49:1737:66:2372:-179.119,0,-121.994	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:134:134,0:134:4779:0:0:0,-40.338,-430.268	0/0:154:154,0:154:5500:0:0:0,-46.3586,-495.125	0/1:264:134,129:134:4788:129:4615:-335.954,0,-351.547	0/0:103:103,0:103:3665:0:0:0,-31.0061,-330.054	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:46:24,22:24:864:22:792:-57.7583,0,-64.2352	0/1:127:61,66:61:2196:66:2376:-175.867,0,-159.674	0/1:25:11,14:11:396:14:495:-37.3573,0,-28.457	0/1:65:24,41:24:864:41:1464:-112.489,0,-58.5156	0/1:63:28,35:28:1000:35:1252:-94.0183,0,-71.3505	0/1:55:27,28:27:972:28:1008:-74.4797,0,-71.2413	0/1:106:59,47:59:2116:47:1688:-120.298,0,-158.8	0/1:69:22,47:22:784:47:1688:-131.436,0,-50.1128	0/0:90:89,1:89:3184:1:36:0,-23.4944,-283.186	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716
chr02	26088995	.	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chr02	26089026	.	G	T	24687.5	PASS	AB=0.32761;ABP=1656.84;AC=56;AF=0.297872;AN=188;AO=2105;CIGAR=1X;DP=12415;DPB=12415;DPRA=0.917182;EPP=4573.96;EPPR=22362.7;GTI=9;LEN=1;MEANALT=1.08197;MQM=39.8774;MQMR=45.8562;NS=94;NUMALT=1;ODDS=3.47125;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75265;QR=364145;RO=10305;RPL=2088;RPP=4427.49;RPPR=195.998;RPR=17;RUN=1;SAF=2088;SAP=4427.49;SAR=17;SRF=4676;SRP=194.388;SRR=5629;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:86:86,0:86:3002:0:0:0,-25.8886,-245.208	0/0:221:221,0:221:7834:0:0:0,-66.5276,-664.514	0/1:145:106,39:106:3750:39:1396:-69.7631,0,-262.781	0/1:111:98,13:98:3429:13:464:-5.27944,0,-253.399	0/1:59:36,23:36:1276:23:824:-53.6838,0,-89.7479	0/1:91:54,37:54:1927:37:1324:-84.0914,0,-124.382	0/1:85:71,14:71:2522:14:504:-16.5351,0,-185.499	0/1:225:131,94:131:4584:94:3365:-215.257,0,-314.379	0/1:159:116,43:116:4104:43:1548:-80.5053,0,-297.015	0/1:164:103,61:103:3625:61:2192:-142.478,0,-267.708	0/1:91:59,32:59:2058:32:1152:-72.2346,0,-149.925	0/1:125:87,37:87:3051:37:1315:-72.8625,0,-215.457	0/1:133:80,53:80:2880:53:1900:-117.881,0,-200.68	0/1:112:68,44:68:2416:44:1558:-99.0611,0,-172.923	0/1:123:83,40:83:2963:40:1432:-88.411,0,-219.467	0/1:112:78,34:78:2757:34:1220:-70.8044,0,-197.227	0/0:119:119,0:119:4247:0:0:0,-35.8226,-356.265	0/0:101:101,0:101:3598:0:0:0,-30.404,-304.981	0/0:73:73,0:73:2600:0:0:0,-21.9752,-212.399	0/1:142:100,42:100:3530:42:1508:-89.7592,0,-255.664	0/0:258:257,1:257:9016:1:36:0,-75.0171,-752.252	0/0:105:105,0:105:3708:0:0:0,-31.6081,-320.778	0/1:101:73,28:73:2573:28:1000:-55.9662,0,-186.581	0/0:116:116,0:116:4111:0:0:0,-34.9195,-356.114	0/0:169:169,0:169:5984:0:0:0,-50.8741,-481.847	0/0:532:530,1:530:18705:1:36:0,-156.609,-1637.51	0/0:293:293,0:293:10318:0:0:0,-88.2018,-838.209	0/0:92:92,0:92:3253:0:0:0,-27.6948,-279.639	0/1:172:139,33:139:4846:33:1188:-51.9281,0,-365.993	0/1:103:86,17:86:3035:17:612:-22.1325,0,-219.263	0/1:123:96,27:96:3374:27:968:-47.6797,0,-253.962	0/1:5:3,2:3:108:2:72:-5.05838,0,-7.80347	0/0:31:31,0:31:1089:0:0:0,-9.33193,-91.8408	0/0:8:8,0:8:288:0:0:0,-2.40824,-24.7789	0/0:15:15,0:15:527:0:0:0,-4.51545,-41.7187	0/1:13:10,3:10:344:3:95:-4.63333,0,-24.8015	0/1:372:260,111:260:9172:111:3975:-236.706,0,-685.004	0/1:173:103,70:103:3671:70:2494:-161.067,0,-266.426	0/1:113:83,30:83:2909:30:1056:-55.8663,0,-208.556	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.8107	0/0:213:213,0:213:7482:0:0:0,-64.1194,-600.323	0/1:48:35,13:35:1213:13:453:-24.7162,0,-89.2588	0/1:186:114,72:114:4023:72:2574:-165.151,0,-285.026	0/1:149:86,63:86:3036:63:2255:-152.065,0,-216.421	0/1:115:82,33:82:2868:33:1180:-67.1009,0,-210.387	0/0:163:163,0:163:5749:0:0:0,-49.0679,-491.216	0/1:218:151,67:151:5361:67:2397:-135.897,0,-377.866	0/1:130:94,36:94:3329:36:1292:-74.2783,0,-244.58	0/1:103:62,41:62:2182:41:1442:-95.6451,0,-153.557	0/0:170:170,0:170:5998:0:0:0,-51.1751,-518.386	0/1:65:42,23:42:1504:23:824:-53.6128,0,-112.301	0/1:10:4,6:4:140:6:216:-16.2104,0,-8.96994	0/0:198:198,0:198:6967:0:0:0,-59.6039,-582.762	0/0:64:64,0:64:2210:0:0:0,-19.2659,-189.913	0/1:15:6,9:6:216:9:324:-23.2629,0,-14.2782	0/1:106:86,20:86:3000:20:712:-30.0107,0,-219.896	0/0:82:81,1:81:2861:1:36:0,-21.1818,-233.697	0/1:15:9,6:9:307:6:212:-14.6008,0,-22.8622	0/1:15:10,5:10:347:5:180:-10.4215,0,-25.754	0/1:115:85,30:85:3031:30:1076:-58.221,0,-220.398	0/0:221:221,0:221:7873:0:0:0,-66.5276,-675.726	0/0:8:8,0:8:275:0:0:0,-2.40824,-24.0855	0/0:282:282,0:282:10016:0:0:0,-84.8905,-876.167	0/0:251:251,0:251:8900:0:0:0,-75.5585,-755.562	0/1:82:47,35:47:1663:35:1260:-83.588,0,-116.471	0/0:103:103,0:103:3658:0:0:0,-31.0061,-308.764	0/0:256:254,2:254:8979:2:72:0,-70.4085,-760.831	0/1:85:54,30:54:1936:30:1057:-66.9312,0,-135.358	0/1:48:33,15:33:1171:15:540:-32.5316,0,-84.3084	0/1:88:46,42:46:1607:42:1512:-101.719,0,-108.923	0/1:118:69,49:69:2454:49:1756:-119.989,0,-183.387	0/0:49:49,0:49:1710:0:0:0,-14.7505,-143.831	0/0:156:156,0:156:5481:0:0:0,-46.9607,-437.511	0/1:88:65,23:65:2278:23:813:-42.7192,0,-158.546	0/0:299:299,0:299:10589:0:0:0,-90.008,-891.645	0/0:190:190,0:190:6753:0:0:0,-57.1957,-578.968	0/1:160:112,48:112:3974:48:1671:-94.2092,0,-287.324	0/1:126:83,43:83:2948:43:1544:-92.2567,0,-213.657	0/1:15:13,2:13:455:2:72:-1.92099,0,-33.9183	0/0:185:185,0:185:6508:0:0:0,-55.6905,-534.657	0/0:163:163,0:163:5781:0:0:0,-49.0679,-472.503	0/1:215:148,67:148:5200:67:2408:-145.292,0,-383.587	0/0:216:216,0:216:7671:0:0:0,-65.0225,-667.571	0/0:140:140,0:140:4939:0:0:0,-42.1442,-423.596	0/1:167:101,66:101:3590:66:2360:-154.85,0,-265.935	0/1:261:163,98:163:5801:98:3519:-229.176,0,-425.636	0/1:72:46,26:46:1626:26:932:-57.0882,0,-118.31	0/1:118:80,38:80:2868:38:1359:-78.208,0,-202.126	0/1:108:70,38:70:2476:38:1364:-82.3618,0,-179.31	0/1:58:40,18:40:1405:18:648:-38.1374,0,-101.328	0/1:140:94,46:94:3350:46:1652:-98.2392,0,-239.649	0/1:116:52,64:52:1837:64:2283:-162.521,0,-122.764	0/0:102:102,0:102:3552:0:0:0,-30.7051,-299.489	0/0:274:272,1:272:9669:1:36:0,-79.8449,-827.71
chr02	26089042	.	A	C	22964.8	PASS	AB=0.323749;ABP=1739.05;AC=56;AF=0.297872;AN=188;AO=2087;CIGAR=1X;DP=12471;DPB=12471;DPRA=0.837737;EPP=4534.87;EPPR=22542.9;GTI=9;LEN=1;MEANALT=1.01695;MQM=39.8874;MQMR=45.6723;NS=94;NUMALT=1;ODDS=0.964881;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72932;QR=370584;RO=10380;RPL=2072;RPP=4405.52;RPPR=239.842;RPR=15;RUN=1;SAF=2072;SAP=4405.52;SAR=15;SRF=4658;SRP=239.842;SRR=5722;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:82:82,0:82:2948:0:0:0,-24.6845,-238.763	0/0:226:226,0:226:8059:0:0:0,-68.0328,-677.045	0/1:145:107,38:107:3826:38:1351:-66.0633,0,-265.347	0/1:113:99,14:99:3529:14:495:-6.70779,0,-259.388	0/1:59:36,23:36:1267:23:820:-53.4261,0,-88.7076	0/1:90:53,37:53:1900:37:1308:-82.9234,0,-122.483	0/1:83:70,13:70:2516:13:451:-14.3419,0,-183.619	0/1:230:137,93:137:4885:93:3255:-206.883,0,-334.96	0/1:157:115,42:115:4095:42:1463:-75.3328,0,-295.47	0/1:167:104,63:104:3699:63:2201:-142.881,0,-271.72	0/1:92:60,32:60:2131:32:1105:-68.9774,0,-155.567	0/1:125:89,36:89:3180:36:1259:-68.2198,0,-222.884	0/1:130:78,52:78:2774:52:1827:-113.47,0,-193.226	0/1:113:71,42:71:2536:42:1456:-90.3099,0,-182.329	0/1:122:83,39:83:2980:39:1375:-83.9347,0,-219.77	0/1:109:78,31:78:2796:31:1060:-58.6503,0,-199.859	0/0:121:121,0:121:4306:0:0:0,-36.4246,-360.414	0/0:101:101,0:101:3611:0:0:0,-30.404,-304.894	0/0:74:74,0:74:2652:0:0:0,-22.2762,-217.02	0/1:143:101,42:101:3613:42:1483:-87.4565,0,-260.675	0/0:259:259,0:259:9276:0:0:0,-77.9668,-767.932	0/0:104:104,0:104:3724:0:0:0,-31.3071,-320.115	0/1:100:73,27:73:2612:27:964:-53.1145,0,-190.075	0/0:116:116,0:116:4134:0:0:0,-34.9195,-357.177	0/0:173:173,0:173:6212:0:0:0,-52.0782,-494.518	0/0:532:531,1:531:18992:1:36:0,-156.551,-1655.01	0/0:296:296,0:296:10574:0:0:0,-89.1049,-853.385	0/0:95:95,0:95:3378:0:0:0,-28.5978,-288.119	0/1:172:138,34:138:4929:34:1207:-53.158,0,-370.703	0/1:109:91,18:91:3242:18:640:-22.2083,0,-232.163	0/1:123:95,28:95:3365:28:967:-47.5419,0,-251.836	0/1:5:3,2:3:108:2:72:-5.05838,0,-7.80347	0/0:31:31,0:31:1112:0:0:0,-9.33193,-92.6721	0/0:8:8,0:8:288:0:0:0,-2.40824,-24.7789	0/0:13:13,0:13:464:0:0:0,-3.91339,-36.7518	0/1:14:11,3:11:392:3:99:-4.59818,0,-26.8804	0/1:376:266,110:266:9469:110:3852:-225.073,0,-707.445	0/1:176:106,70:106:3796:70:2454:-157.69,0,-272.84	0/1:115:83,32:83:2951:32:1131:-61.0319,0,-210.287	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.8107	0/0:215:215,0:215:7688:0:0:0,-64.7214,-610.994	0/1:47:34,13:34:1220:13:456:-25.5996,0,-88.9479	0/1:187:115,72:115:4116:72:2515:-160.569,0,-290.284	0/1:149:85,64:85:3039:64:2225:-149.881,0,-215.29	0/1:117:82,35:82:2940:35:1222:-71.1696,0,-214.329	0/0:165:165,0:165:5869:0:0:0,-49.6699,-498.406	0/1:213:148,65:148:5275:65:2275:-128.574,0,-368.375	0/1:132:97,35:97:3476:35:1203:-66.3304,0,-255.368	0/1:101:62,39:62:2216:39:1372:-89.9764,0,-156.165	0/0:175:175,0:175:6211:0:0:0,-52.6802,-531.023	0/1:66:43,23:43:1540:23:820:-52.9669,0,-114.175	0/1:10:4,6:4:144:6:216:-16.2104,0,-9.19609	0/0:195:195,0:195:6963:0:0:0,-58.7008,-579.571	0/0:68:68,0:68:2427:0:0:0,-20.47,-205.699	0/1:16:7,9:7:243:9:316:-22.4427,0,-15.8996	0/1:111:90,21:90:3205:21:724:-29.6825,0,-231.605	0/0:82:81,1:81:2908:1:36:0,-21.1818,-234.925	0/1:13:8,5:8:275:5:168:-11.3518,0,-20.6535	0/1:15:10,5:10:360:5:180:-10.4215,0,-26.7089	0/1:116:86,30:86:3058:30:1039:-55.2001,0,-221.846	0/0:221:219,0:219:7789:0:0:0,-65.9256,-668.09	0/0:8:8,0:8:288:0:0:0,-2.40824,-24.9021	0/0:282:282,0:282:10112:0:0:0,-84.8905,-881.145	0/0:250:250,0:250:8943:0:0:0,-75.2575,-757.588	0/1:81:46,35:46:1629:35:1244:-82.7393,0,-114.215	0/0:103:103,0:103:3676:0:0:0,-31.0061,-308.305	0/0:253:251,2:251:8964:2:72:0,-69.5055,-754.06	0/1:84:56,28:56:1989:28:980:-60.7784,0,-139.617	0/1:48:33,15:33:1180:15:527:-31.5397,0,-84.7361	0/1:90:47,43:47:1670:43:1504:-101.061,0,-112.208	0/1:120:71,49:71:2544:49:1697:-114.395,0,-188.65	0/0:51:51,0:51:1832:0:0:0,-15.3525,-153.158	0/0:158:158,0:158:5636:0:0:0,-47.5627,-445.37	0/1:89:67,22:67:2404:22:775:-39.3742,0,-165.355	0/0:301:300,0:300:10711:0:0:0,-90.309,-900.358	0/0:187:187,0:187:6657:0:0:0,-56.2926,-567.626	0/1:161:112,49:112:4003:49:1695:-95.8933,0,-287.068	0/1:125:84,41:84:3000:41:1451:-85.0867,0,-216.216	0/1:16:14,2:14:500:2:72:-1.61996,0,-36.7946	0/0:192:192,0:192:6878:0:0:0,-57.7978,-562.499	0/0:163:163,0:163:5840:0:0:0,-49.0679,-474.198	0/1:216:149,67:149:5336:67:2363:-141.381,0,-391.186	0/0:214:214,0:214:7633:0:0:0,-64.4204,-663.003	0/0:139:139,0:139:4954:0:0:0,-41.8432,-422.724	0/1:167:102,65:102:3629:65:2249:-145.723,0,-269.117	0/1:262:164,97:164:5838:97:3348:-215.33,0,-425.964	0/1:70:45,25:45:1586:25:864:-52.6926,0,-115.21	0/1:117:79,38:79:2799:38:1325:-76.3965,0,-197.311	0/1:110:71,39:71:2527:39:1346:-80.7883,0,-180.317	0/1:59:42,17:42:1500:17:571:-31.5709,0,-106.829	0/1:143:97,46:97:3454:46:1588:-92.9554,0,-247.851	0/1:115:53,62:53:1892:62:2163:-153.651,0,-126.539	0/0:106:106,0:106:3787:0:0:0,-31.9092,-316.265	0/0:274:274,0:274:9766:0:0:0,-82.4822,-836.975
chr02	26130498	.	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chr02	26130506	.	G	C	71076.1	PASS	AB=0.552255;ABP=67.6886;AC=127;AF=0.682796;AN=186;AO=3498;CIGAR=1X;DP=4737;DPB=4737;DPRA=16.3319;EPP=7598.82;EPPR=2684.78;GTI=3;LEN=1;MEANALT=1.04494;MQM=59.9863;MQMR=59.97;NS=93;NUMALT=1;ODDS=1.14108;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124092;QR=43748;RO=1235;RPL=3498;RPP=7598.82;RPPR=2684.78;RPR=0;RUN=1;SAF=3498;SAP=7598.82;SAR=0;SRF=1235;SRP=2684.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1094:-98.7683,-9.33193,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:66:32,34:32:1131:34:1212:-89.5183,0,-82.2298	0/1:125:30,95:30:1059:95:3351:-264.179,0,-57.9917	0/1:14:11,3:11:396:3:104:-5.48839,0,-31.7683	0/1:23:5,18:5:180:18:644:-51.3669,0,-9.62837	0/1:52:19,33:19:663:33:1176:-90.4942,0,-44.3399	0/1:44:20,24:20:720:24:860:-64.4765,0,-51.8835	0/1:63:33,30:33:1176:30:1056:-76.3786,0,-87.1829	0/1:34:10,24:10:360:24:860:-67.4868,0,-22.5093	0/1:49:26,23:26:919:23:815:-58.9203,0,-68.2757	0/1:76:34,42:34:1211:42:1483:-110.885,0,-86.4172	0/1:51:26,25:26:924:25:892:-65.2472,0,-68.1251	0/1:58:30,28:30:1072:28:1004:-73.2161,0,-79.3327	0/1:30:12,18:12:428:18:628:-47.8146,0,-29.8279	0/1:48:29,19:29:1015:19:684:-47.4409,0,-77.2114	1/1:23:0,23:0:0:23:819:-74.0316,-6.92369,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:41:18,23:18:636:23:824:-62.0961,0,-45.2258	1/1:92:0,92:0:0:92:3262:-293.802,-27.6948,0	1/1:46:0,46:0:0:46:1616:-145.726,-13.8474,0	0/1:52:18,33:18:648:33:1162:-89.3186,0,-41.8871	1/1:30:0,30:0:0:30:1057:-95.439,-9.0309,0	1/1:46:0,45:0:0:45:1584:-142.556,-13.5464,0	1/1:179:0,179:0:0:179:6378:-574.112,-53.8844,0	1/1:145:1,144:1:36:144:5108:-456.268,-40.0511,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:153:43,110:43:1519:110:3891:-304.326,0,-90.9448	0/1:46:19,27:19:668:27:946:-71.6061,0,-46.5983	0/1:55:26,29:26:928:29:1044:-77.7182,0,-67.2816	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:135:69,66:69:2444:66:2360:-172.02,0,-179.574	0/1:91:42,49:42:1470:49:1756:-130.93,0,-105.197	0/1:41:17,24:17:599:24:841:-63.6641,0,-41.8959	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:23:17,6:17:608:6:216:-12.8668,0,-48.1283	0/1:66:32,34:32:1127:34:1216:-89.8786,0,-81.8695	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	0/1:29:20,9:20:720:9:324:-20.776,0,-56.3989	1/1:82:0,82:0:0:82:2915:-262.586,-24.6845,0	0/1:50:21,29:21:743:29:1027:-77.6907,0,-52.1418	0/1:78:29,49:29:1036:49:1729:-132.412,0,-70.0736	0/1:48:24,24:24:855:24:846:-62.0084,0,-62.8207	1/1:61:0,61:0:0:61:2172:-195.747,-18.3628,0	0/1:43:20,23:20:708:23:809:-60.184,0,-51.1013	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	1/1:70:0,70:0:0:70:2497:-224.981,-21.0721,0	1/1:37:0,37:0:0:37:1314:-118.56,-11.1381,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:61:15,46:15:528:46:1635:-129.075,0,-29.4885	1/1:28:0,28:0:0:28:959:-86.6159,-8.42884,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:17:7,10:7:252:10:352:-26.9007,0,-17.9114	0/1:55:21,34:21:744:34:1220:-93.5502,0,-50.7277	1/1:89:0,89:0:0:89:3157:-284.353,-26.7917,0	.:.:.:.:.:.:.:.	1/1:81:0,81:0:0:81:2872:-258.716,-24.3834,0	1/1:86:0,85:0:0:85:3008:-270.739,-25.5876,0	0/1:20:12,8:12:413:8:258:-17.5124,0,-31.4772	1/1:53:0,53:0:0:53:1885:-169.927,-15.9546,0	1/1:74:0,74:0:0:74:2630:-236.947,-22.2762,0	0/1:95:65,30:65:2328:30:1068:-67.8342,0,-181.182	0/1:38:15,23:15:527:23:828:-63.405,0,-36.321	0/1:10:1,9:1:36:9:312:-25.4051,0,-0.587975	0/1:49:21,28:21:756:28:996:-75.2044,0,-53.6168	1/1:19:0,19:0:0:19:665:-60.1728,-5.71957,0	1/1:93:0,93:0:0:93:3304:-297.581,-27.9958,0	0/1:53:23,30:23:828:30:1067:-80.3866,0,-58.8895	1/1:75:0,75:0:0:75:2669:-240.454,-22.5773,0	1/1:73:0,73:0:0:73:2584:-232.808,-21.9752,0	0/1:57:36,21:36:1261:21:748:-50.4866,0,-96.6317	0/1:43:18,25:18:636:25:885:-67.0222,0,-44.6237	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:39:1,38:1:36:38:1338:-117.121,-8.1419,0	1/1:53:0,53:0:0:53:1874:-168.938,-15.9546,0	0/1:98:43,55:43:1531:55:1923:-143.843,0,-108.581	1/1:57:0,57:0:0:57:2016:-181.711,-17.1587,0	1/1:46:0,46:0:0:46:1633:-147.257,-13.8474,0	0/1:34:13,21:13:447:21:743:-56.9583,0,-30.3227	0/1:84:31,53:31:1086:53:1868:-143.11,0,-72.761	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3376	0/1:42:20,22:20:703:22:775:-57.4279,0,-50.9503	0/1:49:22,27:22:760:27:952:-71.2447,0,-53.9654	0/1:33:17,16:17:612:16:556:-40.4332,0,-45.4794	0/1:121:64,56:64:2234:56:1995:-143.34,0,-164.838	0/1:38:23,15:23:815:15:540:-37.4974,0,-62.2316	1/1:80:0,80:0:0:80:2833:-255.208,-24.0824,0	1/1:55:1,54:1:36:54:1936:-170.918,-12.9584,0
chr02	26218294	.	T	C	32343.9	PASS	AB=0.503795;ABP=3.48824;AC=57;AF=0.303191;AN=188;AO=1934;CIGAR=1X;DP=6616;DPB=6616;DPRA=1.09932;EPP=4202.64;EPPR=10165.5;GTI=2;LEN=1;MEANALT=1.03279;MQM=59.7642;MQMR=59.6509;NS=94;NUMALT=1;ODDS=1.80545;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68977;QR=167578;RO=4680;RPL=0;RPP=4202.64;RPPR=10165.5;RPR=1934;RUN=1;SAF=1934;SAP=4202.64;SAR=0;SRF=4680;SRP=10165.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:51:17,34:17:612:34:1220:-94.7543,0,-40.0609	0/1:135:73,62:73:2597:62:2208:-158.343,0,-193.338	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.7178	0/1:73:36,37:36:1296:37:1309:-96.1344,0,-94.9687	0/1:86:44,42:44:1576:42:1492:-108.638,0,-116.219	0/1:39:26,13:26:919:13:455:-29.5254,0,-71.286	0/1:267:132,135:132:4732:135:4797:-351.452,0,-345.663	0/1:45:22,23:22:788:23:820:-60.5738,0,-57.6984	0/1:83:39,44:39:1400:44:1576:-117.13,0,-101.314	0/1:88:46,42:46:1644:42:1508:-109.516,0,-121.75	0/1:70:28,42:28:1004:42:1496:-113.733,0,-69.4459	0/1:112:56,56:56:2008:56:2012:-147.635,0,-147.276	0/1:56:39,17:39:1404:17:612:-38.5558,0,-109.802	0/0:92:92,0:92:3287:0:0:0,-27.6948,-295.708	0/0:102:102,0:102:3654:0:0:0,-30.7051,-329.062	0/0:55:54,1:54:1936:1:36:0,-12.9584,-170.691	0/1:45:23,22:23:820:22:784:-57.3306,0,-60.5762	0/0:98:98,0:98:3499:0:0:0,-29.5009,-314.487	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.2243	0/1:33:20,13:20:720:13:464:-32.1635,0,-55.1059	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.499	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:193:193,0:193:6912:0:0:0,-58.0988,-620.679	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.484	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.088	0/1:104:49,55:49:1752:55:1960:-145.367,0,-126.657	0/1:91:55,36:55:1972:36:1284:-88.4638,0,-150.325	0/1:65:31,34:31:1108:34:1207:-89.3673,0,-80.3569	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:15:15,0:15:536:0:0:0,-4.51545,-47.234	0/0:23:23,0:23:820:0:0:0,-6.92369,-72.2111	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.3283	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:231:116,115:116:4168:115:4111:-300.634,0,-305.762	0/1:82:48,34:48:1716:34:1220:-85.2632,0,-130.032	0/1:83:49,34:49:1756:34:1194:-82.7645,0,-133.339	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:59:33,26:33:1175:26:932:-66.4335,0,-88.291	0/1:19:10,9:10:360:9:324:-23.7761,0,-26.8658	0/1:114:67,47:67:2391:47:1676:-116.805,0,-181.021	0/1:91:38,53:38:1360:53:1900:-143.877,0,-95.3069	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:25:10,15:10:360:15:528:-40.3256,0,-25.2186	0/1:77:40,37:40:1440:37:1316:-95.5625,0,-106.632	0/1:49:23,25:23:824:25:896:-66.2929,0,-59.1889	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.783	0/1:25:15,10:15:540:10:352:-24.4629,0,-41.4108	0/1:6:5,1:5:180:1:32:-1.39313,0,-14.7435	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.3	0/1:60:28,32:28:996:32:1139:-84.7566,0,-71.8706	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.0737	0/1:31:18,13:18:648:13:458:-32.2149,0,-49.1851	0/0:118:117,1:117:4204:1:36:0,-31.9233,-374.941	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:279:279,0:279:9960:0:0:0,-83.9874,-895.253	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.458	0/1:61:24,36:24:852:36:1288:-97.9478,0,-58.7228	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:47:12,35:12:432:35:1252:-98.8296,0,-25.0728	0/1:23:10,13:10:360:13:464:-35.1738,0,-25.8206	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:175:67,108:67:2395:108:3863:-295.182,0,-163.125	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1206	0/1:62:28,34:28:987:34:1212:-90.7183,0,-70.4792	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.939	0/0:194:193,1:193:6932:1:36:0,-54.8015,-620.345	1/1:4:0,4:0:0:4:136:-12.5702,-1.20412,0	0/1:164:95,69:95:3408:69:2460:-172.286,0,-257.552	0/1:9:3,6:3:108:6:216:-17.0729,0,-7.3659	0/0:113:112,1:112:4011:1:36:0,-30.4181,-356.072	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:55:25,30:25:896:30:1067:-79.7846,0,-64.4037	0/0:153:153,0:153:5461:0:0:0,-46.0576,-491.512	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.757	0/1:150:65,85:65:2317:85:3031:-227.864,0,-163.528	0/1:179:86,93:86:3070:93:3319:-244.878,0,-222.641	0/1:45:23,22:23:828:22:779:-56.8775,0,-61.2978	0/1:75:39,36:39:1396:36:1287:-93.5555,0,-103.354	0/1:84:47,37:47:1680:37:1315:-93.3563,0,-125.93	0/1:49:22,27:22:792:27:964:-72.3245,0,-56.6926	0/1:77:38,39:38:1355:39:1391:-102.291,0,-98.7551	0/1:97:32,65:32:1148:65:2323:-180.127,0,-74.4299	0/0:129:128,1:128:4592:1:36:0,-35.2346,-409.843	0/0:155:155,0:155:5551:0:0:0,-46.6596,-499.497
chr02	26404785	.	TGTA	CGTA,CGTG	128367	PASS	AB=0.448991,0.547463;ABP=85.8627,74.7435;AC=132,54;AF=0.709677,0.290323;AN=186;AO=4090,2017;CIGAR=1X3M,1X2M1X;DP=6125;DPB=6126;DPRA=0,1.23474;EPP=8884.33,4382.87;EPPR=0;GTI=2;LEN=1,4;MEANALT=1.82796,2.28814;MQM=59.998,59.9831;MQMR=0;NS=93;NUMALT=2;ODDS=0.100273;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=68,68;PQR=0;PRO=0;QA=145936,71200;QR=0;RO=0;RPL=4090,2017;RPP=8884.33,4382.87;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8884.33,4382.87;SAR=4090,2017;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48,0:0:0:48,0:1701,0:-153.374,-14.4494,0,-153.374,-14.4494,-153.374	1/1:39:0,39,0:0:0:39,0:1396,0:-125.88,-11.7402,0,-125.88,-11.7402,-125.88	1/2:74:0,43,31:0:0:43,31:1521,1091:-213.051,-89.1671,-76.2228,-124.237,0,-114.905	1/2:68:0,37,31:0:0:37,31:1328,1095:-197.855,-89.5263,-78.3882,-108.684,0,-99.3522	1/2:17:0,9,8:0:0:9,8:316,275:-48.3406,-22.6221,-19.9128,-26.0161,0,-23.6078	1/2:38:0,14,24:0:0:14,24:504,862:-111.802,-70.6777,-66.4632,-41.4837,0,-34.259	1/2:123:0,52,70:0:0:52,70:1860,2445:-350.545,-198.873,-183.22,-151.666,0,-130.594	1/2:94:0,35,59:0:0:35,59:1252,2056:-269.627,-167.532,-156.996,-102.449,0,-84.6883	1/2:51:0,25,26:0:0:25,26:888,920:-147.643,-75.2843,-67.7585,-72.7133,0,-64.8865	1/2:94:0,38,56:0:0:38,56:1352,1984:-272.163,-161.976,-150.537,-110.541,0,-93.6835	1/2:56:0,21,35:0:0:21,35:756,1214:-160.715,-99.0247,-92.7031,-62.0456,0,-51.5095	1/2:69:0,33,36:0:0:33,36:1179,1281:-200.883,-104.756,-94.8221,-96.4832,0,-85.6462	1/2:66:0,30,35:0:0:30,35:1072,1234:-187.874,-100.467,-91.4361,-87.4018,0,-76.8658	1/2:133:0,68,65:0:0:68,65:2428,2314:-386.903,-188.954,-168.484,-198.306,0,-178.739	1/2:71:0,33,38:0:0:33,38:1180,1357:-207.208,-110.991,-101.058,-96.5741,0,-85.1349	1/2:62:0,30,32:0:0:30,32:1049,1126:-177.351,-92.0149,-82.984,-85.687,0,-76.0541	1/1:74:0,74,0:0:0:74,0:2637,0:-237.576,-22.2762,0,-237.576,-22.2762,-237.576	1/1:48:0,48,0:0:0:48,0:1707,0:-153.915,-14.4494,0,-153.915,-14.4494,-153.915	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:39:0,19,20:0:0:19,20:665,683:-109.874,-55.7664,-50.0468,-54.4532,0,-48.4326	1/1:61:0,61,0:0:0:61,0:2164,0:-195.027,-18.3628,0,-195.027,-18.3628,-195.027	1/1:51:0,51,0:0:0:51,0:1813,0:-163.45,-15.3525,0,-163.45,-15.3525,-163.45	1/2:89:0,50,39:0:0:50,39:1781,1347:-254.954,-109.784,-94.7328,-145.519,0,-133.779	1/1:62:0,62,0:0:0:62,0:2212,0:-199.345,-18.6639,0,-199.345,-18.6639,-199.345	1/1:70:0,70,0:0:0:70,0:2500,0:-225.253,-21.0721,0,-225.253,-21.0721,-225.253	1/1:177:0,177,0:0:0:177,0:6258,0:-563.321,-53.2823,0,-563.321,-53.2823,-563.321	1/1:143:0,143,0:0:0:143,0:5116,0:-460.583,-43.0473,0,-460.583,-43.0473,-460.583	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/2:129:0,55,73:0:0:55,73:1964,2603:-372.306,-212.184,-195.628,-160.118,0,-138.143	1/2:80:0,33,47:0:0:33,47:1184,1677:-233.646,-137.069,-127.135,-96.9343,0,-82.7859	1/2:80:0,33,47:0:0:33,47:1184,1654:-231.577,-134.998,-125.064,-96.9343,0,-82.7859	1/2:14:0,9,5:0:0:9,5:324,174:-40.9406,-14.4961,-11.7868,-26.7966,0,-25.2914	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:188:0,88,99:0:0:88,99:3137,3495:-540.31,-284.601,-258.11,-255.704,0,-225.903	1/2:63:0,29,34:0:0:29,34:1040,1202:-183.078,-98.2499,-89.52,-85.1845,0,-74.9495	1/2:74:0,34,40:0:0:34,40:1220,1426:-216.11,-116.595,-106.36,-99.8718,0,-87.8306	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:77:0,77,0:0:0:77,0:2741,0:-246.869,-23.1793,0,-246.869,-23.1793,-246.869	1/2:22:0,13,9:0:0:13,9:468,324:-64.983,-26.7966,-22.8832,-38.5463,0,-35.837	1/2:104:0,43,61:0:0:43,61:1540,2149:-300.909,-175.315,-162.371,-125.949,0,-107.586	1/2:68:0,35,33:0:0:35,33:1256,1179:-198.935,-96.4839,-85.9479,-102.809,0,-92.8752	1/2:64:0,23,40:0:0:23,40:816,1423:-182.547,-116.063,-109.139,-66.5741,0,-54.5329	1/1:94:0,94,0:0:0:94,0:3360,0:-302.617,-28.2968,0,-302.617,-28.2968,-302.617	1/2:47:0,29,18:0:0:29,18:1007,634:-133.826,-51.9687,-43.2388,-82.2071,0,-76.7885	1/2:125:0,56,68:0:0:56,68:2002,2379:-356.889,-193.647,-176.789,-163.344,0,-142.874	1/2:113:0,40,72:0:0:40,72:1436,2536:-323.597,-206.457,-194.416,-117.137,0,-95.4625	1/1:71:0,70,0:0:0:70,0:2484,0:-223.455,-21.0721,0,-223.455,-21.0721,-223.455	1/2:69:0,32,36:0:0:32,36:1144,1277:-197.404,-104.123,-94.4899,-93.3639,0,-82.5269	1/2:5:0,3,2:0:0:3,2:104,71:-14.5882,-6.14,-5.23691,-8.79971,0,-8.19765	1/2:60:0,20,40:0:0:20,40:716,1420:-174.446,-116.056,-110.035,-58.7471,0,-46.7059	1/1:28:0,28,0:0:0:28,0:996,0:-89.9549,-8.42884,0,-89.9549,-8.42884,-89.9549	1/2:24:0,12,12:0:0:12,12:432,418:-69.5947,-34.3399,-30.7276,-35.6088,0,-31.9965	1/2:60:0,26,33:0:0:26,33:932,1167:-171.167,-95.1498,-87.323,-76.1181,0,-66.1841	1/1:59:0,59,0:0:0:59,0:2102,0:-189.448,-17.7608,0,-189.448,-17.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chr02	26406807	.	AGTTG	AGTTA,GGTTA	142651	PASS	AB=0.456759,0.539691;ABP=67.0481,56.9634;AC=127,57;AF=0.690217,0.309783;AN=184;AO=4374,2141;CIGAR=4M1X,1X3M1X;DP=6537;DPB=6537;DPRA=24.1889,1.12107;EPP=8652.3,4420.57;EPPR=5.18177;GTI=1;LEN=1,5;MEANALT=1.87778,2.21311;MQM=59.5999,59.9183;MQMR=60;NS=92;NUMALT=2;ODDS=0.559995;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=156859,75391;QR=36;RO=1;RPL=100,27;RPP=8652.3,4420.57;RPPR=5.18177;RPR=4274,2114;RUN=1,1;SAF=4374,2141;SAP=9501.03,4652.13;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32,0:0:0:32,0:1144,0:-103.068,-9.63296,0,-103.068,-9.63296,-103.068	1/1:55:0,55,0:0:0:55,0:1965,0:-177.107,-16.5567,0,-177.107,-16.5567,-177.107	1/2:66:0,25,41:0:0:25,41:900,1448:-191.711,-118.273,-110.748,-73.7953,0,-61.453	1/2:97:0,44,51:0:0:44,51:1572,1773:-272.369,-144.197,-130.951,-128.222,0,-112.869	1/2:51:0,33,18:0:0:33,18:1184,634:-148.536,-51.9689,-42.0349,-96.9216,0,-91.503	1/2:37:0,17,20:0:0:17,20:612,709:-108.045,-58.1149,-52.9974,-50.2877,0,-44.2671	1/2:75:0,35,40:0:0:35,40:1260,1414:-218.322,-115.514,-104.978,-103.165,0,-91.1236	1/2:108:0,44,63:0:0:44,63:1580,2213:-308.99,-180.108,-166.863,-128.878,0,-109.913	1/2:66:0,33,33:0:0:33,33:1188,1144:-190.219,-93.3288,-83.3948,-97.2432,0,-87.3093	1/2:66:0,22,44:0:0:22,44:788,1553:-191.077,-126.816,-120.193,-64.6174,0,-51.3721	1/2:54:0,32,21:0:0:32,21:1148,729:-152.86,-59.2462,-49.6133,-93.6063,0,-87.2847	1/2:79:0,37,42:0:0:37,42:1332,1471:-228.729,-120.04,-108.902,-109.044,0,-96.401	1/2:63:0,42,20:0:0:42,20:1501,711:-180.372,-58.0123,-45.369,-122.432,0,-116.411	1/2:73:0,39,34:0:0:39,34:1404,1211:-213.623,-99.0616,-87.3215,-114.919,0,-104.684	1/2:56:0,26,30:0:0:26,30:936,1075:-164.406,-88.0319,-80.2052,-76.7327,0,-67.7018	1/2:42:0,17,25:0:0:17,25:612,884:-121.641,-72.3229,-67.2054,-49.6731,0,-42.1474	1/1:74:0,74,0:0:0:74,0:2660,0:-239.586,-22.2762,0,-239.586,-22.2762,-239.586	1/1:68:0,67,1:0:0:67,1:2412,36:-216.967,-20.169,0,-214.038,-16.8808,-213.737	1/1:33:0,31,0:0:0:31,0:1116,0:-100.397,-9.33193,0,-100.397,-9.33193,-100.397	1/2:80:0,38,42:0:0:38,42:1368,1480:-232.465,-120.85,-109.411,-111.971,0,-99.3279	1/1:62:0,61,0:0:0:61,0:2196,0:-197.546,-18.3628,0,-197.546,-18.3628,-197.546	1/1:84:0,84,0:0:0:84,0:3016,0:-271.599,-25.2865,0,-271.599,-25.2865,-271.599	1/2:37:0,17,20:0:0:17,20:597,704:-106.249,-57.663,-52.5455,-48.9377,0,-42.9171	1/1:51:0,50,0:0:0:50,0:1792,0:-161.173,-15.0515,0,-161.173,-15.0515,-161.173	1/1:36:0,36,0:0:0:36,0:1288,0:-116.176,-10.8371,0,-116.176,-10.8371,-116.176	1/1:183:0,183,0:0:0:183,0:6569,0:-590.902,-55.0885,0,-590.902,-55.0885,-590.902	1/1:110:0,110,0:0:0:110,0:3906,0:-351.48,-33.1133,0,-351.48,-33.1133,-351.48	1/1:34:0,34,0:0:0:34,0:1209,0:-109.114,-10.235,0,-109.114,-10.235,-109.114	1/2:216:0,77,137:0:0:77,137:2768,4830:-618.976,-393.266,-370.087,-225.77,0,-184.529	1/2:115:0,59,56:0:0:59,56:2107,1990:-334.217,-162.512,-144.751,-172.061,0,-155.203	1/2:96:0,48,48:0:0:48,48:1724,1682:-277.8,-137.209,-122.759,-140.946,0,-126.497	1/2:8:0,2,6:0:0:2,6:72,213:-23.5862,-17.7101,-17.1081,-6.23466,0,-4.42848	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:197:0,101,95:0:0:101,95:3621,3333:-566.531,-271.231,-240.827,-295.295,0,-266.697	1/2:171:0,58,113:0:0:58,113:2088,4037:-499.846,-329.503,-312.043,-170.702,0,-136.685	1/2:77:0,41,36:0:0:41,36:1468,1272:-223.385,-103.945,-91.6025,-119.796,0,-108.959	.:.:.:.:.:.:.:.	1/1:180:0,180,0:0:0:180,0:6468,0:-582.105,-54.1854,0,-582.105,-54.1854,-582.105	1/2:35:0,18,17:0:0:18,17:644,611:-102.711,-50.2057,-44.7871,-52.8639,0,-47.7464	1/2:86:0,32,54:0:0:32,54:1152,1892:-248.302,-154.301,-144.668,-94.3572,0,-78.1016	1/2:71:0,39,32:0:0:39,32:1399,1138:-207.114,-93.0962,-81.356,-114.375,0,-104.742	1/2:74:0,43,31:0:0:43,31:1548,1086:-215.021,-88.716,-75.7717,-126.659,0,-117.327	1/1:73:0,73,0:0:0:73,0:2609,0:-235.033,-21.9752,0,-235.033,-21.9752,-235.033	1/2:106:0,44,62:0:0:44,62:1565,2176:-304.937,-177.441,-164.196,-127.849,0,-109.186	1/2:139:0,60,78:0:0:60,78:2160,2745:-399.68,-223.493,-205.431,-176.223,0,-152.743	1/2:93:0,35,58:0:0:35,58:1245,2032:-267.135,-165.692,-155.156,-101.797,0,-84.337	1/1:88:0,88,0:0:0:88,0:3160,0:-284.613,-26.4906,0,-284.613,-26.4906,-284.613	1/2:59:0,31,28:0:0:31,28:1097,989:-170.02,-80.667,-71.3351,-89.7061,0,-81.2772	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:143:0,70,73:0:0:70,73:2512,2567:-414.187,-209.302,-188.229,-205.241,0,-183.266	1/1:35:0,35,0:0:0:35,0:1260,0:-113.701,-10.5361,0,-113.701,-10.5361,-113.701	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	1/2:69:0,27,42:0:0:27,42:972,1455:-197.905,-118.598,-110.47,-79.6609,0,-67.0176	1/1:25:0,25,0:0:0:25,0:875,0:-78.9328,-7.52575,0,-78.9328,-7.52575,-78.9328	2/2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chr02	26406823	.	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chr02	26418852	.	T	C	24925.6	PASS	AB=0.494873;ABP=3.7006;AC=56;AF=0.301075;AN=186;AO=1500;CIGAR=1X;DP=5176;DPB=5176;DPRA=0.959975;EPP=3260.22;EPPR=7926.8;GTI=2;LEN=1;MEANALT=1.03509;MQM=59.932;MQMR=59.9766;NS=93;NUMALT=1;ODDS=2.37623;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53596;QR=131364;RO=3673;RPL=1500;RPP=3260.22;RPPR=7926.8;RPR=0;RUN=1;SAF=0;SAP=3260.22;SAR=1500;SRF=0;SRP=7978.83;SRR=3673;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.818	0/1:73:42,31:42:1512:31:1116:-78.7765,0,-114.399	0/1:128:65,63:65:2336:63:2253:-164.499,0,-171.967	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:22:7,15:7:252:15:540:-42.3057,0,-16.4063	0/1:57:28,29:28:1004:29:1040:-76.7557,0,-73.5172	0/1:77:56,21:56:1993:21:756:-45.1879,0,-156.463	0/1:78:40,38:40:1421:38:1349:-98.2279,0,-104.705	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:43:13,30:13:468:30:1080:-84.569,0,-29.5154	0/1:77:43,34:43:1548:34:1220:-86.9275,0,-116.434	0/1:46:18,28:18:648:28:989:-75.4746,0,-44.8045	0/1:42:23,19:23:820:19:684:-49.2467,0,-61.4793	0/1:55:33,22:33:1169:22:788:-54.6881,0,-88.9586	0/1:42:23,19:23:809:19:680:-48.8825,0,-60.485	0/0:24:23,1:23:824:1:36:0,-3.62644,-70.885	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:70:31,39:31:1112:39:1396:-104.865,0,-79.3192	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/0:73:73,0:73:2609:0:0:0,-21.9752,-235.056	0/1:62:35,27:35:1245:27:972:-69.134,0,-93.6889	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:146:146,0:146:5191:0:0:0,-43.9504,-467.328	0/0:164:163,0:163:5841:0:0:0,-49.0679,-525.44	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2452	0/1:131:71,60:71:2548:60:2126:-152.133,0,-190.131	0/1:83:35,48:35:1260:48:1724:-130.46,0,-88.72	0/1:60:37,23:37:1313:23:828:-56.7823,0,-100.408	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:143:76,67:76:2717:67:2395:-172.759,0,-201.724	0/1:104:58,46:58:2069:46:1648:-117.297,0,-155.172	0/1:50:25,25:25:870:25:885:-64.915,0,-63.5605	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:34:19,15:19:684:15:532:-37.9781,0,-51.6553	0/1:100:59,41:59:2105:41:1476:-103.033,0,-159.614	0/1:44:25,19:25:900:19:680:-48.2838,0,-68.0757	0/1:47:18,29:18:648:29:1037:-79.4952,0,-44.5035	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/1:69:37,32:37:1309:32:1122:-80.5127,0,-97.3385	0/1:109:46,63:46:1648:63:2239:-168.959,0,-115.791	0/1:67:38,29:38:1334:29:1036:-73.3849,0,-100.187	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:40:28,12:28:1000:12:428:-26.8176,0,-78.2742	0/1:4:1,3:1:36:3:93:-7.47261,0,-2.39415	0/1:58:28,30:28:993:30:1063:-78.5203,0,-72.153	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.272	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:96:47,49:47:1684:49:1719:-126.092,0,-122.948	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.291	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:6,1:6:216:1:36:-1.20615,0,-17.4519	0/1:52:13,39:13:468:39:1400:-110.641,0,-26.8061	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.229	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/1:29:11,18:11:396:18:644:-49.5607,0,-27.2529	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:121:121,0:121:4299:0:0:0,-36.4246,-387.078	0/1:91:27,64:27:968:64:2288:-178.783,0,-60.0418	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/1:50:20,30:20:720:30:1076:-82.1014,0,-50.0773	0/1:32:10,22:10:360:22:788:-61.6118,0,-23.1113	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.86	0/1:41:18,23:18:648:23:824:-62.1411,0,-46.3097	0/0:134:134,0:134:4781:0:0:0,-40.338,-430.447	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/1:70:39,31:39:1374:31:1116:-79.6796,0,-102.883	0/1:56:32,23:32:1148:23:828:-57.9276,0,-86.7134	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:60:60,0:60:2145:0:0:0,-18.0618,-193.316	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.482	0/1:104:62,42:62:2228:42:1508:-104.703,0,-169.477	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:37:23,14:23:828:14:504:-34.56,0,-63.706	0/0:98:98,0:98:3490:0:0:0,-29.5009,-314.309	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	0/1:55:28,27:28:1008:27:957:-69.8872,0,-74.4797	0/1:62:37,25:37:1328:25:885:-61.3027,0,-101.158	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	0/1:66:24,42:24:849:42:1508:-116.147,0,-56.8598	0/1:50:14,36:14:504:36:1292:-101.532,0,-30.6466	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:73:72,1:72:2592:1:36:0,-18.3769,-229.93
chr02	26418879	.	T	C	65605.7	PASS	AB=0.554103;ABP=59.402;AC=133;AF=0.722826;AN=184;AO=3144;CIGAR=1X;DP=4135;DPB=4135;DPRA=0;EPP=6830.12;EPPR=2150.6;GTI=0;LEN=1;MEANALT=1.02174;MQM=59.9905;MQMR=60;NS=92;NUMALT=1;ODDS=0.396639;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112479;QR=35362;RO=989;RPL=0;RPP=6830.12;RPPR=2150.6;RPR=3144;RUN=1;SAF=3144;SAP=6830.12;SAR=0;SRF=989;SRP=2150.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	0/1:30:14,16:14:504:16:561:-41.7862,0,-36.6672	0/1:124:62,62:62:2216:62:2224:-163.096,0,-162.377	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:28:8,20:8:284:20:716:-56.3389,0,-17.4745	0/1:54:31,23:31:1116:23:828:-58.5885,0,-84.4961	0/1:76:22,54:22:792:54:1936:-151.638,0,-48.7274	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:47:27,20:27:956:20:720:-50.9804,0,-72.2073	0/1:27:9,18:9:324:18:648:-50.5241,0,-21.378	0/1:38:20,18:20:720:18:644:-46.8515,0,-53.6896	0/1:51:26,25:26:936:25:900:-65.9685,0,-69.2069	0/1:34:21,13:21:756:13:468:-32.2246,0,-58.1322	0/1:40:17,23:17:608:23:828:-62.8029,0,-43.0108	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:50:19,31:19:676:31:1116:-85.7002,0,-46.1165	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	0/1:46:26,20:26:917:20:720:-51.2814,0,-68.9972	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:189:0,189:0:0:189:6762:-608.654,-56.8947,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	0/1:85:37,48:37:1324:48:1700:-127.698,0,-93.8745	0/1:89:37,52:37:1332:52:1861:-140.977,0,-93.3907	0/1:53:26,27:26:936:27:972:-71.8433,0,-68.6049	.:.:.:.:.:.:.:.	1/1:14:0,14:0:0:14:489:-44.3389,-4.21442,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	0/1:117:58,59:58:2051:59:2112:-155.128,0,-149.641	0/1:78:28,50:28:1004:50:1792:-138.082,0,-67.1955	0/1:25:15,10:15:540:10:356:-24.8555,0,-41.4108	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:78:0,78:0:0:78:2788:-251.161,-23.4803,0	0/1:18:10,8:10:356:8:284:-20.4848,0,-26.9627	0/1:45:18,27:18:644:27:968:-73.891,0,-44.7442	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	0/1:26:9,17:9:324:17:612:-47.5867,0,-21.6791	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	0/1:31:10,21:10:360:21:744:-57.9518,0,-23.4124	0/1:71:30,40:30:1072:40:1432:-107.892,0,-75.5056	0/1:39:10,29:10:360:29:1040:-82.1742,0,-21.0041	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	0/1:85:44,41:44:1580:41:1468:-106.829,0,-116.904	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:43:11,32:11:392:32:1152:-91.0459,0,-22.6758	1/1:27:1,26:1:36:26:916:-79.1582,-4.52954,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:36:19,17:19:684:17:612:-44.5764,0,-51.0532	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:108:0,107:0:0:107:3823:-343.906,-32.2102,0	1/1:97:0,97:0:0:97:3462:-311.791,-29.1999,0	0/1:36:16,20:16:576:20:704:-52.8475,0,-41.3379	1/1:31:0,31:0:0:31:1092:-98.5868,-9.33193,0	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	0/1:60:42,18:42:1459:18:633:-39.2327,0,-113.537	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:38:12,26:12:432:26:932:-72.7597,0,-27.7821	0/1:55:23,32:23:824:32:1139:-86.2617,0,-57.9267	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:31:19,12:19:680:12:432:-29.8893,0,-52.1972	1/1:89:0,89:0:0:89:3184:-286.755,-26.7917,0	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	0/1:26:12,14:12:423:14:500:-37.5094,0,-30.5783	0/1:47:18,29:18:648:29:1032:-79.0451,0,-44.5035	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:75:26,49:26:928:49:1735:-133.857,0,-61.261	1/1:98:0,98:0:0:98:3519:-316.919,-29.5009,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:26:9,17:9:320:17:612:-47.5867,0,-21.3156	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	0/1:54:23,31:23:824:31:1090:-82.152,0,-58.2277	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	0/1:34:11,23:11:396:23:815:-63.4357,0,-25.7477	0/1:36:21,15:21:752:15:536:-37.7377,0,-57.1692	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0
chr02	26418919	.	T	C	15407.5	PASS	AB=0.449382;ABP=51.5934;AC=51;AF=0.277174;AN=184;AO=983;CIGAR=1X;DP=4062;DPB=4062;DPRA=0.943375;EPP=2120.23;EPPR=6678.12;GTI=1;LEN=1;MEANALT=1.0566;MQM=60;MQMR=59.9857;NS=92;NUMALT=1;ODDS=2.51039;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34901;QR=109262;RO=3074;RPL=981;RPP=2120.23;RPPR=6678.12;RPR=2;RUN=1;SAF=983;SAP=2137.57;SAR=0;SRF=3074;SRP=6678.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:585:0:0:0,-5.11751,-52.9719	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.735	0/1:30:16,14:16:572:14:500:-36.3053,0,-42.7825	0/1:121:58,63:58:2075:63:2235:-164.989,0,-150.595	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/1:27:19,8:19:684:8:284:-17.7755,0,-53.7625	0/1:53:22,31:22:792:31:1076:-81.1906,0,-55.6511	0/1:74:53,21:53:1904:21:752:-45.73,0,-149.362	0/1:34:18,16:18:639:16:572:-41.5784,0,-47.6032	0/1:47:19,27:19:680:27:968:-73.2302,0,-47.3221	0/1:26:17,9:17:608:9:324:-21.6791,0,-47.2252	0/1:37:18,19:18:636:19:680:-50.3911,0,-46.4299	0/1:52:25,27:25:900:27:938:-69.0757,0,-65.6675	0/1:34:13,21:13:468:21:752:-57.7712,0,-32.2246	0/1:40:23,17:23:807:17:604:-42.6494,0,-60.908	0/1:26:14,12:14:487:12:428:-31.032,0,-36.3324	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/0:41:40,0:40:1410:0:0:0,-12.0412,-126.836	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/1:47:28,18:28:978:18:648:-44.5961,0,-74.2787	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.303	0/1:45:19,26:19:680:26:927:-70.201,0,-47.9828	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:185:185,0:185:6578:0:0:0,-55.6905,-592.103	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:85:48,37:48:1720:37:1324:-93.8745,0,-129.498	0/1:89:52,37:52:1851:37:1316:-91.9501,0,-140.078	0/1:54:28,26:28:1000:26:927:-67.4917,0,-74.0598	.:.:.:.:.:.:.:.	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	.:.:.:.:.:.:.:.	0/1:113:56,57:56:1990:57:2036:-149.496,0,-145.356	0/1:74:46,28:46:1641:28:991:-67.2273,0,-125.7	0/1:25:10,15:10:347:15:528:-40.3256,0,-24.0379	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:77:77,0:77:2747:0:0:0,-23.1793,-247.472	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:45:27,18:27:959:18:614:-42.0306,0,-73.079	0/1:24:14,10:14:487:10:360:-25.5196,0,-36.9345	0/1:27:18,9:18:648:9:316:-20.651,0,-50.5241	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:31:20,11:20:716:11:392:-26.2881,0,-55.4358	0/1:68:39,29:39:1385:29:1021:-71.7302,0,-104.477	0/1:40:30,10:30:1057:10:356:-20.34,0,-83.3978	0/0:70:70,0:70:2477:0:0:0,-21.0721,-223.18	0/1:84:41,42:41:1450:42:1508:-110.669,0,-105.449	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:42:31,11:31:1116:11:392:-22.9768,0,-88.1084	0/0:27:26,1:26:927:1:36:0,-4.52953,-80.1491	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:7:5,2:5:180:2:57:-3.3061,0,-14.4449	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:24:17,7:17:597:7:252:-15.8042,0,-46.8314	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:109:109,0:109:3876:0:0:0,-32.8123,-349.035	0/0:93:93,0:93:3327:0:0:0,-27.9958,-299.647	0/1:33:17,16:17:608:16:576:-42.241,0,-45.118	0/0:30:30,0:30:1052:0:0:0,-9.0309,-94.9877	0/0:88:88,0:88:3138:0:0:0,-26.4906,-282.645	0/1:57:18,39:18:644:39:1377:-107.068,0,-41.1142	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:39:26,13:26:928:13:460:-29.9952,0,-72.0981	0/1:52:32,20:32:1130:20:716:-49.1142,0,-86.2972	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:29:12,17:12:432:17:608:-46.3222,0,-30.4913	0/0:89:89,0:89:3156:0:0:0,-26.7917,-284.255	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:26:12,14:12:428:14:500:-37.5094,0,-31.032	0/1:47:28,19:28:980:19:668:-46.2967,0,-74.3618	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:76:49,27:49:1727:27:956:-63.4769,0,-132.833	0/0:95:95,0:95:3315:0:0:0,-28.5978,-298.567	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:26:17,9:17:612:9:320:-21.3156,0,-47.5867	0/0:72:71,1:71:2520:1:36:0,-18.0759,-223.452	0/1:25:13,12:13:455:12:423:-30.8793,0,-33.7562	0/1:54:31,23:31:1088:23:796:-55.6993,0,-81.9736	0/1:36:18,18:18:627:18:627:-45.9168,0,-45.9173	0/1:19:12,7:12:432:7:244:-16.5799,0,-33.5016	0/1:32:21,11:21:718:11:396:-26.3498,0,-55.3011	0/1:34:14,20:14:491:20:720:-54.8938,0,-34.2861	0/0:40:39,0:39:1389:0:0:0,-11.7402,-125.093	0/0:52:52,0:52:1796:0:0:0,-15.6536,-161.917
chr02	26433102	.	G	A	107604	PASS	AB=0.480514;ABP=18.1586;AC=129;AF=0.701087;AN=184;AO=5300;CIGAR=1X;DP=7695;DPB=7695;DPRA=0;EPP=11425.1;EPPR=5173.32;GTI=0;LEN=1;MEANALT=1.02174;MQM=59.9626;MQMR=59.9883;NS=92;NUMALT=1;ODDS=1.61369;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187868;QR=83742;RO=2393;RPL=15;RPP=11381.9;RPPR=5130.09;RPR=5285;RUN=1;SAF=9;SAP=11433.8;SAR=5291;SRF=5;SRP=5156.01;SRR=2388;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	1/1:97:0,97:0:0:97:3459:-311.523,-29.1999,0	0/1:64:23,41:23:776:41:1460:-112.43,0,-50.8823	0/1:187:101,86:101:3543:86:3035:-217.087,0,-262.787	0/1:31:19,12:19:684:12:428:-29.5269,0,-52.5584	0/1:46:31,15:31:1080:15:531:-34.2745,0,-83.6584	0/1:113:65,48:65:2288:48:1720:-121.069,0,-172.161	0/1:174:89,85:89:3112:85:3003:-218.121,0,-227.928	0/1:124:81,43:81:2865:43:1526:-100.304,0,-220.76	0/1:131:57,74:57:1977:74:2629:-197.408,0,-138.766	0/1:54:25,29:25:880:29:1025:-76.3051,0,-63.2621	0/1:72:31,41:31:1063:41:1443:-108.491,0,-74.3021	0/1:67:34,33:34:1201:33:1152:-83.8144,0,-88.2246	0/1:54:29,25:29:990:25:882:-63.4406,0,-73.149	0/1:73:35,38:35:1195:38:1346:-99.0928,0,-85.8735	0/1:43:21,22:21:714:22:779:-57.4878,0,-51.6313	1/1:79:0,79:0:0:79:2811:-253.23,-23.7814,0	1/1:48:0,48:0:0:48:1664:-150.041,-14.4494,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:130:65,65:65:2278:65:2323:-170.196,0,-166.143	1/1:120:0,120:0:0:120:4282:-385.558,-36.1236,0	1/1:66:0,66:0:0:66:2359:-212.568,-19.868,0	0/1:148:84,64:84:2970:64:2284:-161.27,0,-222.489	1/1:144:0,144:0:0:144:5111:-459.975,-43.3483,0	1/1:49:0,49:0:0:49:1744:-157.242,-14.7505,0	1/1:238:1,237:1:36:237:8381:-750.704,-68.0469,0	1/1:103:0,103:0:0:103:3665:-330.054,-31.0061,0	1/1:25:0,25:0:0:25:883:-79.7875,-7.52575,0	0/1:231:113,118:113:3951:118:4223:-310.712,0,-286.244	0/1:163:83,80:83:2916:80:2845:-207.22,0,-213.606	0/1:96:45,51:45:1587:51:1819:-135.092,0,-114.218	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:2:0,1:0:0:1:36:-3.23845,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:219:99,120:99:3410:120:4260:-317.652,0,-241.191	0/1:136:78,58:78:2712:58:2060:-144.73,0,-203.383	0/1:44:24,20:24:833:20:720:-51.8835,0,-62.0394	.:.:.:.:.:.:.:.	1/1:152:0,152:0:0:152:5359:-482.444,-45.7566,0	0/1:21:7,14:7:244:14:500:-39.0145,0,-15.9778	0/1:131:72,59:72:2525:59:2107:-150.464,0,-188.067	0/1:73:40,33:40:1415:33:1135:-80.4754,0,-105.671	0/1:62:31,31:31:1088:31:1090:-79.744,0,-79.5654	1/1:83:0,83:0:0:83:2958:-266.453,-24.9855,0	0/1:121:76,45:76:2656:45:1604:-108.226,0,-202.86	0/1:137:70,67:70:2486:67:2368:-171.977,0,-182.752	0/1:84:40,44:40:1418:44:1549:-114.413,0,-102.629	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	0/1:125:54,71:54:1905:71:2499:-187.533,0,-134.097	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:176:104,72:104:3642:72:2556:-177.307,0,-275.004	1/1:55:1,54:1:36:54:1898:-167.496,-12.9584,0	0/1:8:3,5:3:108:5:172:-13.4097,0,-7.66693	0/1:80:38,42:38:1326:42:1458:-107.424,0,-95.5532	1/1:42:1,41:1:21:41:1447:-128.425,-10.5433,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:16:3,13:3:108:13:456:-36.5562,0,-5.25869	0/1:102:49,53:49:1719:53:1857:-136.7,0,-124.287	1/1:92:2,90:2:72:90:3189:-280.369,-20.858,0	.:.:.:.:.:.:.:.	1/1:213:0,213:0:0:213:7517:-676.558,-64.1194,0	1/1:112:0,112:0:0:112:3972:-357.669,-33.7154,0	0/1:79:36,43:36:1271:43:1535:-114.661,0,-90.9107	1/1:58:0,58:0:0:58:2044:-184.231,-17.4597,0	1/1:118:1,117:1:36:117:4148:-369.902,-31.9233,0	0/1:27:18,9:18:626:9:324:-21.378,0,-48.5355	0/1:16:9,7:9:302:7:248:-17.8477,0,-22.6886	0/1:73:26,47:26:910:47:1669:-128.52,0,-60.2389	0/1:71:33,38:33:1130:38:1351:-100.516,0,-80.6272	1/1:17:0,17:0:0:17:603:-54.5995,-5.11751,0	1/1:111:0,111:0:0:111:3942:-354.972,-33.4143,0	0/1:69:36,33:36:1278:33:1173:-85.1059,0,-94.5506	1/1:153:0,153:0:0:153:5404:-486.491,-46.0576,0	1/1:150:1,149:1:36:149:5336:-476.775,-41.5562,0	0/1:66:56,10:56:1988:10:356:-12.5133,0,-159.324	0/1:74:34,40:34:1215:40:1418:-105.595,0,-87.3795	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:87:0,87:0:0:87:3060:-275.627,-26.1896,0	1/1:88:0,88:0:0:88:3159:-284.534,-26.4906,0	0/1:130:76,54:76:2670:54:1916:-133.582,0,-201.41	1/1:87:0,87:0:0:87:3104:-279.588,-26.1896,0	1/1:50:0,50:0:0:50:1772:-159.76,-15.0515,0	0/1:97:45,52:45:1584:52:1826:-135.42,0,-113.648	1/1:133:1,132:1:36:132:4686:-418.302,-36.4387,0	0/1:43:26,17:26:894:17:597:-41.1118,0,-67.8274	0/1:81:48,33:48:1648:33:1119:-76.6242,0,-124.218	0/1:61:28,33:28:975:33:1160:-86.3411,0,-69.6987	0/1:28:13,15:13:455:15:540:-40.5077,0,-32.8531	0/1:49:21,27:21:743:27:951:-71.0953,0,-52.3843	0/1:74:54,20:54:1863:20:720:-42.8526,0,-145.667	1/1:93:0,93:0:0:93:3281:-295.509,-27.9958,0	1/1:99:0,99:0:0:99:3486:-313.952,-29.802,0
chr02	26441930	.	G	T	45996.8	PASS	AB=0.518096;ABP=17.7063;AC=56;AF=0.304348;AN=184;AO=2686;CIGAR=1X;DP=8974;DPB=8974;DPRA=0.963737;EPP=5835.59;EPPR=13631.2;GTI=2;LEN=1;MEANALT=1.13333;MQM=59.3589;MQMR=59.9943;NS=92;NUMALT=1;ODDS=1.26609;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96254;QR=224339;RO=6276;RPL=0;RPP=5835.59;RPPR=13631.2;RPR=2686;RUN=1;SAF=2686;SAP=5835.59;SAR=0;SRF=6276;SRP=13631.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:58:57,1:57:2028:1:36:0,-13.8615,-179.194	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:112:45,67:45:1612:67:2404:-182.787,0,-111.655	0/1:257:123,134:123:4336:134:4808:-354.739,0,-313.05	0/1:61:28,33:28:1008:33:1184:-88.4762,0,-72.6735	0/1:59:25,33:25:892:33:1188:-89.3525,0,-62.7802	0/1:152:73,79:73:2605:79:2840:-209.768,0,-188.94	0/1:97:53,44:53:1874:44:1584:-113.603,0,-139.735	0/1:72:35,37:35:1252:37:1328:-97.4767,0,-91.3109	0/1:106:53,53:53:1892:53:1888:-138.258,0,-138.649	0/1:68:37,31:37:1328:31:1116:-80.2817,0,-99.3522	0/1:96:45,50:45:1608:50:1787:-132.04,0,-116.052	0/1:62:36,26:36:1288:26:932:-65.5341,0,-97.5597	0/1:68:35,33:35:1252:33:1172:-85.3171,0,-92.515	0/1:83:49,34:49:1764:34:1224:-85.4816,0,-134.058	0/1:64:28,36:28:1008:36:1292:-97.2006,0,-71.7704	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:189:63,126:63:2264:126:4513:-349.366,0,-147.128	0/0:133:133,0:133:4757:0:0:0,-40.037,-428.286	0/0:100:100,0:100:3600:0:0:0,-30.103,-324.205	0/1:101:58,43:58:2080:43:1540:-108.383,0,-157.066	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:284:284,0:284:10134:0:0:0,-85.4925,-911.993	0/0:225:225,0:225:8026:0:0:0,-67.7317,-722.274	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:279:129,149:129:4628:149:5331:-395.942,0,-332.785	0/1:60:30,30:30:1068:30:1072:-78.596,0,-78.3701	0/1:122:62,59:62:2216:59:2110:-153.256,0,-162.92	.:.:.:.:.:.:.:.	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:241:131,110:131:4692:110:3942:-282.35,0,-349.892	0/1:133:59,74:59:2108:74:2649:-198.501,0,-149.952	0/1:81:42,39:42:1508:39:1404:-102.275,0,-111.631	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:236:236,0:236:8484:0:0:0,-71.0431,-763.533	0/1:46:28,18:28:1004:18:640:-44.0714,0,-76.8285	0/1:149:87,62:87:3104:62:2224:-155.42,0,-234.735	0/1:92:43,49:43:1536:49:1756:-130.612,0,-110.838	0/1:78:41,37:41:1449:37:1328:-96.3003,0,-107.224	0/0:129:127,0:127:4568:0:0:0,-38.2308,-410.923	0/1:93:43,49:43:1544:49:1747:-129.291,0,-111.199	0/1:154:60,94:60:2133:94:3380:-258.039,0,-145.878	0/1:142:67,75:67:2381:75:2688:-199.316,0,-171.8	0/0:124:124,0:124:4440:0:0:0,-37.3277,-399.771	0/1:202:110,92:110:3917:92:3308:-237.061,0,-291.915	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:119:47,72:47:1669:72:2576:-196.171,0,-114.673	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/1:146:51,94:51:1790:94:3380:-260.099,0,-117.369	0/0:59:59,0:59:2089:0:0:0,-17.7608,-188.278	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:75:39,36:39:1392:36:1292:-92.6982,0,-103.002	0/0:138:137,1:137:4912:1:36:0,-37.9439,-438.632	.:.:.:.:.:.:.:.	0/0:189:188,0:188:6671:0:0:0,-56.5936,-600.255	0/0:136:135,1:135:4810:1:36:0,-37.3418,-429.456	0/1:83:22,61:22:788:61:2172:-170.676,0,-46.2593	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:114:113,1:113:4036:1:36:0,-30.7191,-359.831	0/1:49:24,25:24:864:25:900:-66.5568,0,-63.3321	0/1:23:7,16:7:252:16:576:-45.2228,0,-16.1053	0/1:64:39,25:39:1396:25:900:-62.0083,0,-106.673	0/1:86:34,51:34:1224:51:1832:-139.21,0,-84.5197	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:129:129,0:129:4596:0:0:0,-38.8329,-413.807	0/1:64:24,40:24:860:40:1432:-109.912,0,-58.4559	0/0:138:138,0:138:4928:0:0:0,-41.5421,-443.672	0/0:160:159,1:159:5700:1:36:0,-44.5665,-509.519	0/1:66:31,35:31:1112:35:1256:-93.3177,0,-80.5234	0/1:102:58,44:58:2076:44:1553:-109.262,0,-156.405	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.14	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.361	0/1:209:109,99:109:3912:99:3548:-256.499,0,-289.298	0/0:116:116,0:116:4128:0:0:0,-34.9195,-371.707	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:111:60,51:60:2148:51:1823:-130.931,0,-160.173	0/0:217:216,0:216:7722:0:0:0,-65.0225,-694.651	0/1:46:20,26:20:716:26:928:-69.9261,0,-50.9203	0/1:80:30,50:30:1068:50:1796:-137.748,0,-72.3497	0/1:96:52,44:52:1860:44:1584:-113.906,0,-138.781	0/1:28:19,9:19:684:9:324:-21.077,0,-53.4615	0/1:85:43,42:43:1540:42:1496:-109.346,0,-113.306	0/1:77:25,52:25:896:52:1863:-144.472,0,-57.781	0/0:79:79,0:79:2812:0:0:0,-23.7814,-253.321	0/0:128:128,0:128:4600:0:0:0,-38.5318,-414.162
chr02	26441958	.	C	G	45950.9	PASS	AB=0.522198;ABP=24.5084;AC=56;AF=0.301075;AN=186;AO=2633;CIGAR=1X;DP=8672;DPB=8672;DPRA=0.998069;EPP=5454.4;EPPR=12932.6;GTI=1;LEN=1;MEANALT=1.01667;MQM=59.3847;MQMR=59.9921;NS=93;NUMALT=1;ODDS=1.68251;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93617;QR=213540;RO=6038;RPL=2602;RPP=5454.4;RPPR=12932.6;RPR=31;RUN=1;SAF=2633;SAP=5720.5;SAR=0;SRF=6038;SRP=13114.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:49,1:49:1715:1:36:0,-11.4532,-151.036	0/0:46:46,0:46:1628:0:0:0,-13.8474,-146.809	0/1:109:44,65:44:1545:65:2317:-175.908,0,-106.527	0/1:247:115,132:115:4075:132:4710:-349.23,0,-292.586	0/1:57:26,31:26:936:31:1106:-82.6737,0,-67.4008	0/1:58:25,33:25:896:33:1188:-89.712,0,-63.5006	0/1:149:69,80:69:2457:80:2818:-208.703,0,-176.53	0/1:96:52,44:52:1848:44:1580:-113.545,0,-137.701	0/1:72:35,37:35:1240:37:1324:-97.1161,0,-90.2303	0/1:105:54,51:54:1904:51:1801:-130.73,0,-140.027	0/1:67:34,33:34:1220:33:1164:-84.8723,0,-89.9378	0/1:91:44,47:44:1529:47:1683:-124.272,0,-110.503	0/1:62:36,26:36:1253:26:902:-62.8256,0,-94.406	0/1:65:34,31:34:1211:31:1112:-80.824,0,-89.7286	0/1:84:50,34:50:1760:34:1224:-85.1805,0,-133.394	0/1:67:28,39:28:1000:39:1387:-104.842,0,-70.1464	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.271	0/0:74:74,0:74:2601:0:0:0,-22.2762,-234.336	0/1:182:60,121:60:2115:121:4305:-332.724,0,-135.77	0/0:129:129,0:129:4525:0:0:0,-38.8329,-407.42	0/0:95:95,0:95:3341:0:0:0,-28.5978,-300.908	0/1:98:57,41:57:2023:41:1476:-103.529,0,-152.841	0/0:122:122,0:122:4321:0:0:0,-36.7257,-389.069	0/0:58:58,0:58:2052:0:0:0,-17.4597,-184.949	0/0:263:263,0:263:9326:0:0:0,-79.1709,-839.315	0/0:216:216,0:216:7652:0:0:0,-65.0225,-688.636	0/0:34:34,0:34:1197:0:0:0,-10.235,-108.033	0/1:266:127,139:127:4500:139:4946:-365.087,0,-325.097	0/1:57:27,30:27:951:30:1056:-78.0817,0,-68.7456	0/1:114:59,55:59:2107:55:1947:-141.052,0,-155.581	.:.:.:.:.:.:.:.	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:234:128,106:128:4500:106:3768:-268.788,0,-334.729	0/1:135:60,75:60:2122:75:2679:-200.6,0,-150.609	0/1:78:39,39:39:1369:39:1387:-101.647,0,-100.026	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:234:234,0:234:8283:0:0:0,-70.441,-745.487	0/1:45:27,18:27:949:18:644:-44.7386,0,-72.1764	0/1:146:86,60:86:3076:60:2140:-148.782,0,-233.118	0/1:91:42,49:42:1467:49:1741:-129.575,0,-104.927	0/1:64:30,34:30:981:34:1193:-88.3656,0,-69.3198	0/0:129:129,0:129:4604:0:0:0,-38.8329,-414.526	0/1:91:42,49:42:1479:49:1746:-129.821,0,-106.01	0/1:148:57,91:57:2032:91:3214:-244.915,0,-138.6	0/1:136:65,71:65:2301:71:2548:-188.524,0,-166.41	0/0:120:120,0:120:4268:0:0:0,-36.1236,-384.299	0/1:191:101,90:101:3567:90:3196:-230.301,0,-263.742	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:117:44,73:44:1571:73:2616:-200.367,0,-106.46	0/0:73:73,0:73:2587:0:0:0,-21.9752,-233.08	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	0/1:145:48,97:48:1692:97:3468:-268.519,0,-108.831	0/0:57:57,0:57:1991:0:0:0,-17.1587,-179.461	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:7,2:7:244:2:72:-4.12745,0,-19.5902	0/1:72:38,34:38:1352:34:1189:-84.9042,0,-100.306	0/0:139:139,0:139:4940:0:0:0,-41.8432,-444.752	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978	0/0:172:172,0:172:6072:0:0:0,-51.7772,-546.591	0/0:132:131,1:131:4627:1:36:0,-36.1377,-412.999	0/1:79:19,60:19:680:60:2129:-168.027,0,-37.7478	0/0:69:69,0:69:2429:0:0:0,-20.7711,-218.866	0/0:107:106,1:106:3762:1:36:0,-28.6119,-335.183	0/1:49:24,25:24:856:25:892:-65.8355,0,-62.6106	0/1:23:7,16:7:252:16:568:-44.4997,0,-16.1053	0/1:63:39,24:39:1355:24:845:-57.3559,0,-103.28	0/1:84:34,50:34:1224:50:1773:-134.553,0,-85.1805	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:122:121,1:121:4294:1:36:0,-33.1274,-383.042	0/1:66:25,41:25:887:41:1457:-111.556,0,-60.2801	0/0:136:136,0:136:4776:0:0:0,-40.9401,-430.002	0/0:153:151,2:151:5353:2:72:0,-39.2209,-475.07	0/1:64:27,37:27:960:37:1323:-99.9818,0,-67.4504	0/1:99:56,43:56:1983:43:1520:-107.098,0,-148.942	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:88:88,0:88:3113:0:0:0,-26.4906,-280.398	0/0:99:99,0:99:3479:0:0:0,-29.802,-313.324	0/1:209:111,98:111:3948:98:3442:-247.044,0,-292.599	0/0:113:113,0:113:4022:0:0:0,-34.0164,-362.17	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:110:59,51:59:2040:51:1794:-128.62,0,-150.755	0/0:207:207,0:207:7317:0:0:0,-62.3132,-658.583	0/1:45:20,25:20:695:25:891:-66.9156,0,-49.325	0/1:79:31,48:31:1058:48:1690:-128.533,0,-71.741	0/1:93:51,42:51:1797:42:1504:-107.613,0,-134.014	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5241	0/1:82:43,39:43:1521:39:1374:-99.2717,0,-112.497	0/1:73:24,49:24:833:49:1760:-136.411,0,-53.3097	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.155	0/0:122:122,0:122:4331:0:0:0,-36.7257,-389.966
chr02	26441968	.	G	A	46314.6	PASS	AB=0.527003;ABP=35.4952;AC=57;AF=0.306452;AN=186;AO=2716;CIGAR=1X;DP=8815;DPB=8815;DPRA=1.09576;EPP=5900.73;EPPR=13240.3;GTI=1;LEN=1;MEANALT=1.04839;MQM=59.3645;MQMR=59.9925;NS=93;NUMALT=1;ODDS=1.26053;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97021;QR=216968;RO=6096;RPL=2716;RPP=5900.73;RPPR=13240.3;RPR=0;RUN=1;SAF=2716;SAP=5900.73;SAR=0;SRF=6096;SRP=13240.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:57:56,1:56:1981:1:36:0,-13.5604,-174.965	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/1:111:44,67:44:1568:67:2385:-181.396,0,-107.997	0/1:252:119,133:119:4243:133:4763:-352.189,0,-306.191	0/1:61:28,33:28:1008:33:1169:-87.1231,0,-72.6735	0/1:60:25,35:25:892:35:1252:-94.8664,0,-62.5379	0/1:147:69,78:69:2448:78:2763:-204.578,0,-176.322	0/1:98:55,43:55:1952:43:1544:-109.706,0,-146.452	0/1:71:33,38:33:1188:38:1364:-101.078,0,-85.8555	0/1:107:52,54:52:1836:54:1924:-141.135,0,-133.249	0/1:74:38,36:38:1321:36:1292:-94.2818,0,-96.9085	0/1:97:44,53:44:1556:53:1900:-141.958,0,-111.132	0/1:63:38,25:38:1347:25:884:-60.9126,0,-102.565	0/1:66:33,33:33:1152:33:1184:-86.9999,0,-84.1154	0/1:85:50,35:50:1773:35:1252:-87.3975,0,-134.264	0/1:67:28,39:28:1000:39:1392:-105.353,0,-70.1464	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:51:51,0:51:1798:0:0:0,-15.3525,-162.101	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:191:64,127:64:2275:127:4529:-350.223,0,-147.515	0/0:131:131,0:131:4648:0:0:0,-39.4349,-418.482	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/1:98:55,43:55:1971:43:1546:-109.862,0,-148.163	0/0:121:121,0:121:4301:0:0:0,-36.4246,-387.268	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:273:273,0:273:9770:0:0:0,-82.1812,-879.243	0/0:220:220,0:220:7879:0:0:0,-66.2266,-709.135	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/1:272:125,147:125:4433:147:5251:-390.597,0,-317.261	0/1:61:31,30:31:1103:30:1076:-78.6554,0,-81.2168	0/1:118:58,60:58:2056:60:2140:-156.976,0,-149.787	.:.:.:.:.:.:.:.	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:237:126,111:126:4478:111:3971:-286.143,0,-331.848	0/1:135:59,76:59:2116:76:2689:-201.499,0,-150.07	0/1:81:41,39:41:1439:39:1404:-102.216,0,-105.363	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:236:236,0:236:8439:0:0:0,-71.0431,-759.511	0/1:45:26,19:26:915:19:680:-47.9723,0,-69.1192	0/1:145:83,62:83:2959:62:2221:-156.362,0,-222.894	0/1:89:40,49:40:1424:49:1752:-131.155,0,-101.666	0/1:77:38,39:38:1347:39:1391:-102.282,0,-98.3502	0/0:122:122,0:122:4358:0:0:0,-36.7257,-392.394	0/1:94:44,50:44:1580:50:1776:-131.713,0,-114.195	0/1:151:58,93:58:2071:93:3340:-255.344,0,-141.205	0/1:141:67,74:67:2380:74:2627:-194.156,0,-172.011	0/0:121:121,0:121:4319:0:0:0,-36.4246,-388.887	0/1:197:105,92:105:3752:92:3288:-236.769,0,-278.578	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:118:45,73:45:1608:73:2605:-199.082,0,-109.489	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/1:19:13,6:13:456:6:216:-14.0709,0,-35.6537	0/1:150:53,97:53:1904:97:3465:-266.683,0,-126.397	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:76:40,36:40:1436:36:1292:-92.3968,0,-106.659	0/0:134:133,1:133:4687:1:32:0,-37.1387,-418.794	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:186:186,0:186:6636:0:0:0,-55.9916,-597.319	0/0:132:131,1:131:4661:1:36:0,-36.1377,-416.052	0/1:82:21,61:21:752:61:2184:-172.095,0,-43.3218	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/0:108:107,1:107:3815:1:36:0,-28.913,-339.95	0/1:51:25,26:25:881:26:924:-68.1114,0,-64.2533	0/1:23:7,16:7:252:16:576:-45.2228,0,-16.1053	0/1:64:40,24:40:1432:24:848:-57.328,0,-109.912	0/1:86:33,53:33:1167:53:1896:-145.018,0,-79.4478	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:128:127,1:127:4476:1:32:0,-35.3325,-399.74	0/1:65:23,42:23:824:42:1512:-116.808,0,-54.9164	0/0:136:136,0:136:4792:0:0:0,-40.9401,-431.44	0/0:156:154,2:154:5531:2:72:0,-40.124,-491.075	0/1:65:29,36:29:1031:36:1288:-96.5234,0,-73.5357	0/1:103:58,45:58:2076:45:1593:-112.072,0,-156.104	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.425	0/0:98:98,0:98:3491:0:0:0,-29.5009,-314.402	0/1:206:108,98:108:3805:98:3501:-253.21,0,-280.634	0/0:107:107,0:107:3777:0:0:0,-32.2102,-340.132	0/0:48:48,0:48:1692:0:0:0,-14.4494,-152.563	0/1:112:60,52:60:2116:52:1872:-135.038,0,-156.992	0/0:204:202,1:202:7172:1:36:0,-57.7957,-642.015	0/1:45:19,26:19:680:26:924:-69.8401,0,-47.9828	0/1:81:30,51:30:1076:51:1813:-138.972,0,-72.7694	0/1:91:47,44:47:1671:44:1584:-115.411,0,-123.283	0/1:28:19,9:19:665:9:320:-20.7135,0,-51.7439	0/1:82:41,41:41:1467:41:1455:-106.56,0,-107.641	0/1:72:22,50:22:788:50:1800:-140.324,0,-49.5706	0/0:81:81,0:81:2864:0:0:0,-24.3834,-257.991	0/0:123:123,0:123:4337:0:0:0,-37.0267,-390.508
chr02	26442042	.	T	C	30729.7	PASS	AB=0.548837;ABP=114.361;AC=57;AF=0.303191;AN=188;AO=2970;CIGAR=1X;DP=8791;DPB=8791;DPRA=1.29081;EPP=6452.28;EPPR=12636.6;GTI=3;LEN=1;MEANALT=1.0339;MQM=35.4764;MQMR=42.6904;NS=94;NUMALT=1;ODDS=0.893076;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106176;QR=207927;RO=5818;RPL=2970;RPP=6452.28;RPPR=12636.6;RPR=0;RUN=1;SAF=0;SAP=6452.28;SAR=2970;SRF=0;SRP=12636.6;SRR=5818;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.574	0/0:206:205,1:205:7281:1:36:0,-58.4139,-650.772	0/1:79:39,40:39:1396:40:1436:-105.756,0,-102.158	0/1:173:83,90:83:2964:90:3236:-153.714,0,-195.773	0/1:56:31,25:31:1112:25:900:-41.7893,0,-76.8774	0/1:43:17,26:17:608:26:928:-70.8859,0,-42.1077	0/1:117:63,54:63:2234:54:1921:-88.1602,0,-152.7	0/1:129:47,82:47:1654:82:2933:-224.43,0,-109.887	0/1:117:76,41:76:2705:41:1472:-97.5523,0,-208.472	0/1:160:61,99:61:2173:99:3552:-176.369,0,-135.258	0/1:89:42,47:42:1508:47:1684:-80.2719,0,-99.3592	0/1:83:39,44:39:1392:44:1580:-117.506,0,-100.594	0/1:81:48,33:48:1728:33:1184:-82.4815,0,-131.422	0/1:96:42,54:42:1508:54:1921:-94.2458,0,-96.6861	0/1:76:31,44:31:1112:44:1565:-80.2667,0,-69.0406	0/1:86:38,48:38:1352:48:1720:-80.8617,0,-87.1771	0/0:69:69,0:69:2469:0:0:0,-20.7711,-222.462	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:97:30,67:30:1076:67:2389:-121.424,0,-60.8118	0/0:135:135,0:135:4825:0:0:0,-40.639,-404.844	0/0:27:27,0:27:964:0:0:0,-8.12781,-79.1742	0/1:73:37,36:37:1324:36:1288:-59.4972,0,-89.2395	0/0:110:110,0:110:3899:0:0:0,-33.1133,-328.88	0/0:69:69,0:69:2480:0:0:0,-20.7711,-207.326	0/0:322:321,1:321:11474:1:32:0,-94.5104,-939.251	0/0:170:170,0:170:6085:0:0:0,-51.1751,-509.242	0/0:46:46,0:46:1652:0:0:0,-13.8474,-138.978	0/1:187:87,100:87:3128:100:3581:-168.884,0,-202.334	0/1:269:130,138:130:4638:138:4926:-234.77,0,-304.666	0/1:138:54,84:54:1921:84:2975:-143.779,0,-121.167	1/1:18:1,17:1:36:17:612:-35.6691,-2.07239,0	0/0:15:15,0:15:532:0:0:0,-4.51545,-44.406	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:252:126,126:126:4516:126:4509:-207.906,0,-293.672	0/1:167:86,81:86:3084:81:2893:-132.594,0,-204.161	0/1:113:67,46:67:2397:46:1652:-114.952,0,-181.969	0/0:7:7,0:7:248:0:0:0,-2.10721,-21.2811	0/0:136:136,0:136:4884:0:0:0,-40.9401,-407.895	0/1:58:29,29:29:1040:29:1040:-48.3435,0,-70.0713	0/1:119:44,75:44:1580:75:2692:-134.72,0,-97.14	0/1:88:46,42:46:1656:42:1500:-69.9442,0,-112.704	0/1:48:23,25:23:828:25:892:-43.6496,0,-53.5601	0/0:64:64,0:64:2289:0:0:0,-19.2659,-185.951	0/1:68:32,36:32:1152:36:1292:-96.1137,0,-83.5201	0/1:123:51,72:51:1832:72:2565:-123.502,0,-116.054	0/1:95:43,52:43:1544:52:1872:-89.1375,0,-99.6339	0/0:91:91,0:91:3253:0:0:0,-27.3937,-271.828	0/1:174:85,89:85:2987:89:3158:-145.239,0,-195.201	0/1:10:7,3:7:252:3:108:-3.89704,0,-18.6356	0/1:107:50,57:50:1780:57:2021:-149.944,0,-128.272	0/0:37:37,0:37:1332:0:0:0,-11.1381,-108.728	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:77:32,45:32:1148:45:1620:-77.9978,0,-72.8911	0/0:56:55,0:55:1965:0:0:0,-16.5566,-160.107	0/1:7:2,5:2:72:5:180:-9.06756,0,-4.16094	0/1:18:5,13:5:180:13:468:-23.6909,0,-9.80033	0/1:95:28,67:28:1000:67:2377:-124.517,0,-55.8078	0/0:115:115,0:115:4128:0:0:0,-34.6184,-343.947	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.35768	0/0:141:141,0:141:5060:0:0:0,-42.4452,-415.9	0/0:183:183,0:183:6538:0:0:0,-55.0885,-540.682	0/1:63:26,37:26:917:37:1298:-69.079,0,-56.3653	0/0:55:55,0:55:1938:0:0:0,-16.5566,-160.722	0/0:147:147,0:147:5254:0:0:0,-44.2514,-437.626	0/1:166:39,127:39:1396:127:4537:-235.06,0,-68.0716	0/1:61:27,34:27:972:34:1205:-57.4065,0,-61.5916	0/1:86:28,58:28:985:58:2076:-161.222,0,-63.0725	0/1:82:40,42:40:1436:42:1496:-71.5535,0,-92.5647	0/0:26:26,0:26:932:0:0:0,-7.82678,-78.1028	0/0:105:105,0:105:3761:0:0:0,-31.6081,-338.498	0/1:70:30,40:30:1076:40:1432:-108.105,0,-76.0808	0/0:194:194,0:194:6938:0:0:0,-58.3998,-576.793	0/0:107:107,0:107:3813:0:0:0,-32.2102,-317.842	0/1:120:65,55:65:2305:55:1957:-140.277,0,-171.584	0/1:99:40,59:40:1417:59:2120:-160.326,0,-98.0234	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:84:84,0:84:2974:0:0:0,-25.2865,-249.778	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/1:209:89,120:89:3176:120:4293:-208.97,0,-204	0/0:102:101,1:101:3632:1:36:0,-28.2382,-297.831	0/0:64:64,0:64:2296:0:0:0,-19.2659,-190.908	0/1:88:39,49:39:1404:49:1760:-85.9198,0,-91.5167	0/0:120:120,0:120:4300:0:0:0,-36.1236,-358.035	0/1:51:23,28:23:828:28:988:-73.8814,0,-59.4916	0/1:82:33,49:33:1173:49:1764:-134.359,0,-81.1911	0/1:92:36,56:36:1296:56:2012:-153.655,0,-89.2492	0/1:68:36,32:36:1292:32:1152:-53.7053,0,-87.4538	0/1:139:74,65:74:2652:65:2328:-108.729,0,-177.561	0/1:94:28,66:28:1004:66:2364:-123.303,0,-55.0629	0/0:66:66,0:66:2356:0:0:0,-19.868,-197.87	0/0:95:95,0:95:3381:0:0:0,-28.5978,-281.937
chr02	26464100	.	G	A	30720.6	PASS	AB=0.519966;ABP=15.0629;AC=54;AF=0.290323;AN=186;AO=1813;CIGAR=1X;DP=5953;DPB=5953;DPRA=0.994628;EPP=3939.89;EPPR=8990.73;GTI=0;LEN=1;MEANALT=1.01754;MQM=59.9774;MQMR=59.9957;NS=93;NUMALT=1;ODDS=1.95403;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64753;QR=148036;RO=4139;RPL=0;RPP=3939.89;RPPR=8990.73;RPR=1813;RUN=1;SAF=1813;SAP=3939.89;SAR=0;SRF=4139;SRP=8990.73;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/1:106:41,65:41:1460:65:2309:-176.16,0,-99.7868	0/1:150:64,86:64:2265:86:3069:-231.283,0,-158.957	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/1:26:17,9:17:608:9:324:-21.6791,0,-47.2252	0/1:74:35,39:35:1237:39:1385:-102.671,0,-89.3561	0/1:81:41,40:41:1468:40:1436:-105.154,0,-108.033	0/1:46:9,37:9:320:37:1305:-103.902,0,-15.295	0/1:54:23,31:23:824:31:1116:-84.4961,0,-58.2277	0/1:56:33,23:33:1179:23:801:-55.549,0,-89.5595	0/1:75:44,31:44:1572:31:1112:-77.8141,0,-119.194	0/1:55:27,28:27:964:28:1004:-74.1192,0,-70.5202	0/1:82:47,35:47:1669:35:1256:-88.6608,0,-125.811	0/1:55:26,29:26:928:29:1040:-77.3577,0,-67.2816	0/1:40:24,16:24:852:16:576:-40.1338,0,-64.9592	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:141:141,0:141:5037:0:0:0,-42.4452,-453.475	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:143:143,0:143:5112:0:0:0,-43.0473,-460.224	0/0:138:138,0:138:4932:0:0:0,-41.5421,-444.023	0/0:45:44,1:44:1576:1:36:0,-9.94807,-138.533	0/1:205:106,99:106:3792:99:3522:-255.477,0,-279.767	0/1:87:45,42:45:1612:42:1504:-109.465,0,-119.18	0/1:79:46,33:46:1652:33:1188:-83.4472,0,-125.187	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:17:12,5:12:417:5:180:-11.4346,0,-32.7427	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:162:82,79:82:2948:79:2805:-203.864,0,-216.727	0/1:126:63,63:63:2268:63:2249:-164.742,0,-166.452	0/1:65:36,29:36:1296:29:1040:-74.3474,0,-97.377	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.034	0/1:43:24,19:24:864:19:680:-48.5849,0,-65.1383	0/1:49:25,24:25:891:24:840:-61.1641,0,-65.7583	0/1:60:28,32:28:1000:32:1152:-85.9283,0,-72.2536	0/1:52:25,27:25:900:27:968:-71.7838,0,-65.6675	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:72:31,41:31:1112:41:1461:-110.11,0,-78.7172	0/1:126:58,68:58:2072:68:2417:-179.855,0,-148.821	0/1:73:33,40:33:1184:40:1432:-107.202,0,-84.8931	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965	0/1:87:37,50:37:1317:50:1800:-136.093,0,-92.6402	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:72:49,23:49:1760:23:828:-53.17,0,-137.01	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:73:28,45:28:985:45:1620:-124.115,0,-66.9863	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:36:16,20:16:568:20:720:-54.2917,0,-40.6148	0/0:111:111,0:111:3950:0:0:0,-33.4143,-355.69	.:.:.:.:.:.:.:.	0/0:159:159,0:159:5708:0:0:0,-47.8638,-513.836	0/0:117:117,0:117:4177:0:0:0,-35.2205,-376.111	0/1:32:15,17:15:540:17:597:-44.4232,0,-39.3036	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:72:71,1:71:2529:1:36:0,-18.0759,-224.262	0/1:91:17,74:17:608:74:2641:-210.541,0,-27.6583	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/1:40:11,29:11:381:29:1040:-81.8732,0,-22.5794	0/1:82:40,42:40:1436:42:1493:-109.978,0,-104.849	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:40:19,21:19:665:21:756:-56.326,0,-48.1316	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/0:75:75,0:75:2669:0:0:0,-22.5772,-240.454	0/1:41:23,18:23:824:18:644:-45.9484,0,-62.1411	0/1:102:37,65:37:1332:65:2316:-177.993,0,-89.4773	0/1:10:1,9:1:36:9:294:-23.7653,0,-0.587975	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:115:68,47:68:2413:47:1684:-117.229,0,-182.807	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:43:42,1:42:1484:1:36:0,-9.34601,-130.253	0/1:48:27,21:27:963:21:752:-53.5568,0,-72.5365	0/0:115:115,0:115:4090:0:0:0,-34.6184,-368.285	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	0/1:61:29,32:29:1044:32:1148:-85.267,0,-75.912	0/1:73:38,35:38:1346:35:1252:-91.0099,0,-99.4635	0/1:59:29,30:29:1040:30:1076:-78.6133,0,-76.1536	0/1:100:47,53:47:1692:53:1908:-141.895,0,-122.464	0/1:61:19,42:19:684:42:1497:-116.66,0,-43.5275	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578
chr02	26490181	.	G	T	314883	PASS	AB=0.485642;ABP=19.9092;AC=134;AF=0.712766;AN=188;AO=11959;CIGAR=1X;DP=16837;DPB=16837;DPRA=0;EPP=25971.6;EPPR=10543.3;GTI=0;LEN=1;MEANALT=1.19149;MQM=59.989;MQMR=59.9934;NS=94;NUMALT=1;ODDS=4.07205;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=423378;QR=169488;RO=4858;RPL=5375;RPP=268.417;RPPR=19.8332;RPR=6584;RUN=1;SAF=5375;SAP=268.417;SAR=6584;SRF=2333;SRP=19.4881;SRR=2525;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	1/1:284:0,284:0:0:284:10076:-906.784,-85.4925,0	0/1:299:162,137:162:5664:137:4848:-346.471,0,-419.881	0/1:360:185,175:185:6505:175:6215:-451.079,0,-477.169	0/1:163:91,72:91:3178:72:2583:-183.651,0,-237.178	0/1:67:38,28:38:1333:28:1000:-70.0877,0,-100.04	0/1:161:93,68:93:3271:68:2355:-163.739,0,-246.146	0/1:379:176,202:176:6126:202:7131:-527.702,0,-437.299	0/1:147:81,66:81:2860:66:2356:-168.048,0,-213.386	0/1:144:61,83:61:2172:83:2959:-223.195,0,-152.398	0/1:130:62,68:62:2144:68:2405:-177.572,0,-154.093	0/1:136:67,69:67:2267:69:2434:-178.376,0,-163.349	0/1:127:58,69:58:2031:69:2439:-181.535,0,-144.832	0/1:141:75,64:75:2514:64:2237:-159.391,0,-184.31	0/1:148:81,67:81:2807:67:2359:-168.014,0,-208.317	0/1:119:62,57:62:2144:57:2030:-147.149,0,-157.402	1/1:123:0,122:0:0:122:4323:-388.89,-36.7257,0	1/1:121:0,121:0:0:121:4288:-386.101,-36.4246,0	1/1:96:1,95:1:36:95:3352:-298.3,-25.3006,0	1/1:474:1,473:1:36:473:16757:-1504.2,-139.09,0	1/1:220:0,220:0:0:220:7793:-701.407,-66.2266,0	1/1:155:0,155:0:0:155:5480:-493.33,-46.6597,0	0/1:117:43,74:43:1522:74:2598:-198.839,0,-102.051	1/1:216:0,216:0:0:216:7631:-686.839,-65.0225,0	1/1:175:0,175:0:0:175:6220:-559.9,-52.6803,0	1/1:486:0,484:0:0:484:17197:-1547.02,-145.699,0	1/1:385:1,384:1:36:384:13592:-1219.48,-112.298,0	1/1:85:0,85:0:0:85:3019:-271.942,-25.5876,0	0/1:498:243,255:243:8481:255:8984:-658.641,0,-612.619	0/1:214:118,96:118:4113:96:3401:-241.885,0,-305.939	0/1:204:114,90:114:4010:90:3175:-224.566,0,-299.68	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:389:207,182:207:7211:182:6417:-460.523,0,-531.961	0/1:247:126,121:126:4467:121:4282:-311.206,0,-327.85	0/1:127:69,58:69:2351:58:2042:-145.82,0,-173.615	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:431:1,430:1:36:430:15313:-1374.29,-126.146,0	0/1:80:45,35:45:1582:35:1231:-87.0108,0,-118.587	0/1:242:128,114:128:4460:114:4049:-291.749,0,-328.726	0/1:160:73,87:73:2562:87:3079:-229.173,0,-182.664	0/1:100:44,56:44:1536:56:1966:-147.052,0,-108.426	1/1:191:0,191:0:0:191:6803:-612.333,-57.4967,0	0/1:224:117,106:117:4153:106:3733:-268.685,0,-306.465	0/1:290:128,161:128:4441:161:5642:-420.548,0,-312.506	0/1:228:131,97:131:4585:97:3454:-242.438,0,-344.184	1/1:236:0,235:0:0:235:8299:-746.569,-70.7421,0	0/1:241:129,112:129:4477:112:3982:-286.023,0,-330.56	0/1:11:6,5:6:212:5:176:-12.8737,0,-16.1135	0/1:411:210,201:210:7358:201:7101:-515.435,0,-538.555	1/1:58:0,58:0:0:58:2025:-182.518,-17.4597,0	0/1:16:12,4:12:403:4:140:-8.1281,0,-31.7766	0/1:296:140,155:140:4897:155:5529:-408.56,0,-351.722	1/1:70:0,70:0:0:70:2441:-219.943,-21.0721,0	1/1:11:0,11:0:0:11:353:-32.079,-3.31133,0	0/1:31:15,16:15:521:16:572:-42.4815,0,-37.8844	0/1:95:53,42:53:1842:42:1505:-107.146,0,-137.458	1/1:204:0,204:0:0:204:7209:-648.873,-61.4101,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:281:0,281:0:0:281:9974:-897.609,-84.5894,0	1/1:357:3,354:3:108:354:12562:-1120.34,-97.3925,0	0/1:181:85,95:85:2986:95:3395:-251.22,0,-214.43	1/1:158:2,155:2:72:155:5495:-487.846,-40.7848,0	1/1:299:2,297:2:68:297:10521:-940.357,-83.5503,0	0/1:168:101,66:101:3603:66:2342:-160.408,0,-273.845	0/1:53:23,30:23:791:30:1064:-80.1171,0,-55.5514	0/1:186:82,104:82:2836:104:3670:-274.512,0,-199.488	0/1:167:101,66:101:3475:66:2309:-157.762,0,-262.693	1/1:38:0,38:0:0:38:1334:-120.356,-11.4391,0	1/1:107:0,107:0:0:107:3804:-342.558,-32.2102,0	0/1:133:74,59:74:2598:59:2071:-146.621,0,-194.033	1/1:214:0,213:0:0:213:7525:-677.084,-64.1194,0	1/1:349:0,349:0:0:349:12438:-1119.26,-105.059,0	0/1:171:80,89:80:2817:89:3142:-231.775,0,-202.534	0/1:202:116,86:116:4088:86:3022:-211.403,0,-307.302	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	1/1:270:0,270:0:0:270:9630:-866.612,-81.2781,0	1/1:257:0,257:0:0:257:9047:-814.222,-77.3647,0	0/1:474:216,258:216:7559:258:9137:-679.62,0,-537.675	1/1:167:1,166:1:36:166:5863:-524.187,-46.6737,0	1/1:128:0,127:0:0:127:4500:-404.851,-38.2308,0	0/1:187:92,95:92:3138:95:3340:-244.527,0,-226.356	1/1:231:2,229:2:68:229:8116:-724.007,-63.0802,0	0/1:80:41,39:41:1416:39:1356:-98.2531,0,-103.65	0/1:132:59,72:59:2027:72:2580:-192.654,0,-142.906	0/1:129:81,48:81:2801:48:1678:-112.472,0,-213.496	0/1:104:55,49:55:1911:49:1725:-124.226,0,-140.957	0/1:172:87,85:87:2966:85:2979:-216.567,0,-215.398	0/1:134:89,44:89:3104:44:1560:-100.334,0,-239.231	1/1:197:2,195:2:72:195:6937:-617.566,-52.4662,0	1/1:237:1,236:1:32:236:8306:-744.36,-68.1448,0
chr02	26490634	.	T	C	32272.8	PASS	AB=0.517072;ABP=12.2781;AC=55;AF=0.295699;AN=186;AO=1911;CIGAR=1X;DP=6093;DPB=6093;DPRA=1.19387;EPP=4152.69;EPPR=9084.11;GTI=1;LEN=1;MEANALT=1;MQM=59.9628;MQMR=59.9978;NS=93;NUMALT=1;ODDS=1.66841;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68329;QR=149499;RO=4182;RPL=0;RPP=4152.69;RPPR=9084.11;RPR=1911;RUN=1;SAF=1911;SAP=4152.69;SAR=0;SRF=4182;SRP=9084.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2145:0:0:0,-18.0618,-193.316	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:113:65,48:65:2321:48:1712:-120.349,0,-175.132	0/1:87:37,50:37:1332:50:1778:-134.112,0,-93.9928	0/1:35:14,21:14:500:21:756:-57.8312,0,-34.8001	0/1:35:9,26:9:320:26:936:-74.0234,0,-18.6063	0/1:83:29,54:29:1029:54:1940:-149.891,0,-67.9357	0/1:73:49,24:49:1741:24:864:-56.1074,0,-134.997	0/1:83:49,34:49:1756:34:1211:-84.31,0,-133.339	0/1:61:29,32:29:1014:32:1142:-84.716,0,-73.2046	0/1:35:21,14:21:756:14:500:-34.8001,0,-57.8312	0/1:92:47,45:47:1692:45:1602:-116.774,0,-124.872	0/1:104:58,46:58:2073:46:1647:-117.211,0,-155.532	0/1:64:37,27:37:1328:27:968:-68.1714,0,-100.556	0/1:70:28,42:28:1000:42:1499:-114.132,0,-69.2433	0/1:50:24,26:24:856:26:918:-67.8844,0,-62.3096	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:117:117,0:117:4151:0:0:0,-35.2205,-373.771	0/0:95:95,0:95:3397:0:0:0,-28.5978,-305.943	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:77:41,36:41:1453:36:1284:-92.6841,0,-107.885	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:65:65,0:65:2309:0:0:0,-19.5669,-208.069	0/0:160:160,0:160:5725:0:0:0,-48.1648,-515.365	0/0:129:128,1:128:4565:1:36:0,-35.2346,-407.416	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:125:55,70:55:1980:70:2508:-188.343,0,-140.846	0/1:80:41,39:41:1472:39:1400:-102.217,0,-108.694	0/1:101:44,57:44:1561:57:2044:-153.828,0,-110.376	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:7:2,5:2:57:5:180:-14.4449,0,-3.3061	0/1:196:88,108:88:3168:108:3876:-290.032,0,-226.341	0/1:77:45,32:45:1612:32:1148:-80.4505,0,-122.191	0/1:42:19,23:19:680:23:820:-61.4793,0,-48.8859	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:62:62,0:62:2217:0:0:0,-18.6639,-199.793	0/1:34:18,16:18:648:16:572:-41.5784,0,-48.4169	0/1:93:47,46:47:1684:46:1648:-120.613,0,-123.851	0/1:39:13,26:13:468:26:928:-72.0981,0,-30.7195	0/1:47:24,23:24:860:23:819:-59.8832,0,-63.5734	0/0:103:103,0:103:3691:0:0:0,-31.0061,-332.391	0/1:62:30,32:30:1072:32:1143:-84.5148,0,-78.1286	0/1:87:46,41:46:1622:41:1464:-105.866,0,-120.075	0/1:77:27,50:27:972:50:1773:-136.672,0,-64.6186	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:141:64,77:64:2300:77:2754:-205.655,0,-164.816	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:71:43,28:43:1544:28:1004:-69.3027,0,-117.88	0/0:38:38,0:38:1337:0:0:0,-11.4391,-120.628	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:75:29,46:29:1021:46:1644:-125.671,0,-69.623	0/0:39:36,3:36:1277:3:108:0,-1.665,-105.156	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:83:45,38:45:1605:38:1364:-98.0752,0,-119.753	0/0:84:83,1:83:2972:1:36:0,-21.6882,-264.115	.:.:.:.:.:.:.:.	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:130:130,0:130:4660:0:0:0,-39.1339,-419.561	0/1:68:29,39:29:1036:39:1389:-104.837,0,-73.0839	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:86:85,1:85:3044:1:36:0,-22.2903,-270.591	0/1:80:23,57:23:809:57:2040:-159.79,0,-49.0459	0/1:33:16,17:16:576:17:612:-45.4794,0,-42.241	0/1:43:18,25:18:648:25:900:-68.3767,0,-45.7076	0/1:53:29,24:29:1040:24:851:-60.9549,0,-77.9598	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:140:140,0:140:4962:0:0:0,-42.1442,-446.731	0/1:86:49,37:49:1733:37:1317:-92.9336,0,-130.364	0/0:123:123,0:123:4412:0:0:0,-37.0267,-397.251	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:70:41,29:41:1453:29:1023:-71.3096,0,-109.992	0/1:57:28,29:28:1000:29:1044:-77.1161,0,-73.1567	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:52:50,2:50:1796:2:72:0,-8.81684,-155.086	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:234:88,146:88:3156:146:5219:-399.408,0,-213.824	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.763	0/0:50:49,1:49:1756:1:36:0,-12.1487,-155.421	0/1:37:11,26:11:396:26:932:-73.0607,0,-24.8446	0/0:126:123,3:123:4412:3:108:0,-27.8546,-387.176	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:76:39,37:39:1395:37:1332:-97.3041,0,-102.97	0/1:59:28,31:28:996:31:1112:-82.6306,0,-72.1941	0/1:49:29,20:29:1044:20:705:-49.0223,0,-79.5243	0/1:121:70,51:70:2512:51:1836:-129.096,0,-189.907	0/1:46:23,23:23:824:23:807:-59.1018,0,-60.6359	0/0:53:53,0:53:1874:0:0:0,-15.9546,-168.935	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913
chr02	26515062	.	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chr02	26541897	.	T	C	42704.5	PASS	AB=0.462198;ABP=26.1583;AC=132;AF=0.702128;AN=188;AO=2112;CIGAR=1X;DP=3125;DPB=3125;DPRA=11.19;EPP=4589.16;EPPR=2198.37;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.6989;MQMR=59.9674;NS=94;NUMALT=1;ODDS=1.78998;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75619;QR=36145;RO=1011;RPL=0;RPP=4589.16;RPPR=2198.37;RPR=2112;RUN=1;SAF=2112;SAP=4589.16;SAR=0;SRF=1011;SRP=2198.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:48:0,48:0:0:48:1709:-154.093,-14.4494,0	0/1:28:20,8:20:712:8:280:-17.1105,0,-55.9778	0/1:64:36,28:36:1288:28:1004:-71.4029,0,-96.9577	0/1:14:8,6:8:288:6:208:-14.8428,0,-22.053	0/1:13:5,8:5:180:8:288:-22.3473,0,-12.6387	0/1:58:38,20:38:1364:20:716:-47.3038,0,-105.601	0/1:44:25,19:25:896:19:680:-48.2823,0,-67.715	0/1:27:14,13:14:500:13:456:-33.2421,0,-37.2084	0/1:50:24,25:24:864:25:900:-66.2084,0,-62.9723	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/1:23:14,9:14:500:9:324:-22.5822,0,-38.4125	0/1:25:18,7:18:644:7:243:-14.6783,0,-50.7648	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:17:0,17:0:0:17:608:-55.0487,-5.11751,0	1/1:18:0,18:0:0:18:644:-58.2872,-5.41854,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:57:40,17:40:1440:17:604:-37.5272,0,-112.739	1/1:42:0,42:0:0:42:1504:-135.65,-12.6433,0	1/1:26:1,25:1:36:25:888:-76.6389,-4.22851,0	0/1:47:25,22:25:888:22:788:-57.094,0,-66.0906	1/1:37:0,37:0:0:37:1329:-119.908,-11.1381,0	1/1:26:0,26:0:0:26:924:-83.462,-7.82678,0	1/1:142:5,137:5:180:137:4920:-426.388,-26.1942,0	1/1:56:0,56:0:0:56:1982:-178.625,-16.8577,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:86:47,39:47:1665:39:1400:-100.408,0,-124.247	0/1:47:22,25:22:792:25:896:-66.7994,0,-57.4573	0/1:50:28,22:28:1000:22:792:-56.5495,0,-75.2639	1/1:17:1,16:1:36:16:576:-48.5767,-1.51924,0	1/1:20:0,20:0:0:20:716:-64.7631,-6.0206,0	1/1:36:0,36:0:0:36:1287:-116.007,-10.8371,0	1/1:38:0,38:0:0:38:1368:-123.417,-11.4391,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:75:38,37:38:1356:37:1328:-97.2261,0,-99.7632	0/1:110:43,67:43:1532:67:2404:-183.492,0,-105.06	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:45:0,45:0:0:45:1600:-144.274,-13.5464,0	0/1:16:7,9:7:248:9:324:-24.6847,0,-17.8477	0/1:30:15,15:15:536:15:540:-39.901,0,-39.5439	0/1:14:8,6:8:288:6:208:-14.8447,0,-22.053	0/1:18:14,4:14:500:4:144:-7.89508,0,-39.9176	1/1:26:0,26:0:0:26:936:-84.537,-7.82678,0	0/1:21:14,7:14:504:7:252:-16.7039,0,-39.3765	0/1:45:26,19:26:932:19:684:-48.344,0,-70.6525	0/1:34:14,20:14:504:20:720:-54.8891,0,-35.4631	1/1:35:0,35:0:0:35:1237:-111.63,-10.5361,0	0/1:88:61,27:61:2196:27:972:-61.3073,0,-171.414	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:24:14,10:14:496:10:360:-25.5162,0,-37.7495	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:14:4,10:4:140:10:360:-28.5198,0,-8.73016	0/1:46:28,18:28:1000:18:648:-44.7999,0,-76.468	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:9:3,6:3:108:6:204:-15.9841,0,-7.3659	0/1:27:3,24:3:108:24:864:-69.9538,0,-1.94736	0/1:40:20,20:20:712:20:720:-53.083,0,-52.3655	1/1:34:0,34:0:0:34:1224:-110.46,-10.235,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:105:0,105:0:0:105:3772:-339.661,-31.6082,0	0/1:53:5,48:5:180:48:1712:-138.322,0,-0.597475	0/1:41:19,22:19:676:22:780:-58.1808,0,-48.8258	1/1:18:0,18:0:0:18:644:-58.2836,-5.41854,0	1/1:67:0,67:0:0:67:2408:-216.965,-20.169,0	0/1:58:43,15:43:1525:15:532:-30.7533,0,-119.224	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:23:17,6:17:604:6:212:-12.493,0,-47.7669	0/1:37:26,11:26:917:11:396:-24.8446,0,-71.7065	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:37:0,37:0:0:37:1324:-119.452,-11.1381,0	0/1:32:10,22:10:360:22:788:-61.6051,0,-23.1113	1/1:43:0,43:0:0:43:1544:-139.248,-12.9443,0	1/1:41:0,41:0:0:41:1472:-132.774,-12.3422,0	0/1:28:13,15:13:453:15:528:-39.3751,0,-32.6708	0/1:40:24,16:24:849:16:576:-40.1338,0,-64.6866	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:26:0,26:0:0:26:932:-84.1875,-7.82678,0	0/1:83:45,37:45:1616:37:1332:-95.1334,0,-120.686	1/1:55:0,55:0:0:55:1976:-178.11,-16.5567,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	1/1:28:0,28:0:0:28:1004:-90.6735,-8.42884,0	0/1:16:8,8:8:288:8:284:-21.0846,0,-21.4509	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:40:17,23:17:608:23:824:-62.4421,0,-43.0108	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	1/1:37:0,37:0:0:37:1320:-119.091,-11.1381,0	1/1:21:0,21:0:0:21:756:-68.3649,-6.32163,0
chr02	26541909	.	T	C	42354.8	PASS	AB=0.448867;ABP=44.093;AC=133;AF=0.707447;AN=188;AO=2108;CIGAR=1X;DP=3120;DPB=3120;DPRA=16.7634;EPP=4580.47;EPPR=2189.68;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.7087;MQMR=59.9374;NS=94;NUMALT=1;ODDS=1.97251;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75118;QR=36068;RO=1007;RPL=0;RPP=4580.47;RPPR=2189.68;RPR=2108;RUN=1;SAF=2108;SAP=4580.47;SAR=0;SRF=1007;SRP=2189.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:49:0,49:0:0:49:1739:-156.79,-14.7505,0	0/1:28:20,8:20:716:8:288:-17.8386,0,-56.3389	0/1:68:38,30:38:1368:30:1076:-76.6758,0,-102.951	0/1:13:8,5:8:288:5:172:-11.9033,0,-22.354	0/1:13:5,8:5:180:8:288:-22.3473,0,-12.6387	0/1:59:39,20:39:1387:20:716:-47,0,-107.367	0/1:47:28,19:28:1000:19:672:-46.6569,0,-76.167	0/1:27:14,13:14:500:13:460:-33.6042,0,-37.2084	0/1:51:24,27:24:864:27:964:-71.7218,0,-62.73	0/1:10:3,6:3:108:6:212:-16.3566,0,-7.00607	0/1:23:14,9:14:504:9:320:-22.2187,0,-38.7744	0/1:24:18,6:18:644:6:216:-12.5624,0,-51.0659	0/1:9:7,2:7:237:2:72:-4.12745,0,-18.9498	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:17:10,7:10:356:7:248:-17.5467,0,-27.2637	1/1:17:0,15:0:0:15:532:-47.8505,-4.51545,0	1/1:20:0,20:0:0:20:711:-64.3123,-6.0206,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:56:39,17:39:1404:17:612:-38.5511,0,-109.802	1/1:42:0,42:0:0:42:1500:-135.29,-12.6433,0	1/1:26:1,25:1:32:25:892:-77.3986,-4.62747,0	0/1:49:25,24:25:900:24:852:-62.2466,0,-66.5705	1/1:36:0,36:0:0:36:1284:-115.859,-10.8371,0	1/1:27:0,27:0:0:27:960:-86.6978,-8.12781,0	1/1:141:3,137:3:108:137:4899:-430.978,-32.4289,0	1/1:54:0,54:0:0:54:1914:-172.511,-16.2556,0	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	0/1:85:45,40:45:1589:40:1424:-102.868,0,-117.711	0/1:44:22,22:22:784:22:784:-57.6386,0,-57.6386	0/1:52:28,24:28:1004:24:852:-61.3421,0,-75.0223	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	1/1:20:0,20:0:0:20:720:-65.1242,-6.0206,0	1/1:35:0,35:0:0:35:1228:-110.796,-10.5361,0	1/1:39:0,39:0:0:39:1391:-125.484,-11.7402,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:77:40,37:40:1440:37:1315:-95.4528,0,-106.718	0/1:108:43,65:43:1540:65:2323:-176.808,0,-106.382	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:45:0,45:0:0:45:1591:-143.463,-13.5464,0	0/1:16:7,9:7:252:9:324:-24.6847,0,-18.2125	0/1:31:16,15:16:572:15:528:-38.5148,0,-41.8512	0/1:15:8,7:8:288:7:252:-18.5111,0,-21.752	0/1:18:14,4:14:500:4:144:-7.89508,0,-39.9176	1/1:26:0,26:0:0:26:928:-83.8158,-7.82678,0	0/1:21:14,7:14:500:7:252:-16.7039,0,-39.0145	0/1:45:27,18:27:968:18:648:-45.1055,0,-73.891	0/1:33:13,20:13:468:20:716:-54.829,0,-32.5257	1/1:34:0,34:0:0:34:1216:-109.744,-10.235,0	0/1:87:61,26:61:2188:26:932:-58.0093,0,-170.996	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:25:14,11:14:496:11:396:-28.4536,0,-37.4485	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:14:4,10:4:144:10:352:-27.7957,0,-9.0992	0/1:45:27,18:27:968:18:636:-44.0171,0,-73.891	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:8:2,5:2:68:5:176:-13.7193,0,-3.99732	0/1:29:3,26:3:108:26:932:-75.4681,0,-1.3453	0/1:39:20,19:20:720:19:684:-50.1455,0,-53.3886	1/1:33:0,33:0:0:33:1180:-106.501,-9.93399,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:104:0,104:0:0:104:3697:-332.92,-31.3071,0	1/1:55:5,50:5:180:50:1788:-144.561,-0.00458536,0	0/1:40:18,22:18:648:22:779:-58.3909,0,-46.6107	1/1:18:0,18:0:0:18:639:-57.8313,-5.41854,0	1/1:65:0,65:0:0:65:2312:-208.331,-19.567,0	0/1:57:42,15:42:1508:15:536:-31.4161,0,-117.999	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:22:17,5:17:604:5:176:-9.55707,0,-48.0679	0/1:36:25,11:25:900:11:396:-25.1457,0,-70.4839	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	1/1:37:0,37:0:0:37:1328:-119.812,-11.1381,0	0/1:32:11,21:11:396:21:752:-58.3666,0,-26.3498	1/1:41:0,41:0:0:41:1464:-132.051,-12.3422,0	1/1:41:0,41:0:0:41:1464:-132.054,-12.3422,0	0/1:28:13,15:13:468:15:540:-40.3977,0,-34.0308	0/1:38:22,16:22:792:16:564:-39.6512,0,-60.1665	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:25:0,25:0:0:25:888:-80.2243,-7.52575,0	0/1:83:46,37:46:1647:37:1316:-93.7516,0,-123.532	1/1:54:0,54:0:0:54:1903:-171.544,-16.2556,0	1/1:11:0,11:0:0:11:379:-34.4406,-3.31133,0	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	1/1:29:0,29:0:0:29:1032:-93.1911,-8.72987,0	0/1:14:7,7:7:248:7:248:-18.4489,0,-18.4498	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:40:17,23:17:612:23:815:-61.6296,0,-43.3722	0/1:18:12,6:12:428:6:212:-14.0063,0,-33.4403	1/1:38:0,38:0:0:38:1364:-123.05,-11.4391,0	1/1:25:0,25:0:0:25:896:-80.958,-7.52575,0
chr02	26551926	.	A	G	75738	PASS	AB=0.430493;ABP=162.093;AC=132;AF=0.702128;AN=188;AO=3906;CIGAR=1X;DP=6078;DPB=6078;DPRA=0;EPP=8484.78;EPPR=4717.28;GTI=4;LEN=1;MEANALT=1.01064;MQM=59.8991;MQMR=59.9843;NS=94;NUMALT=1;ODDS=0.409858;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137183;QR=77278;RO=2171;RPL=3906;RPP=8484.78;RPPR=4717.28;RPR=0;RUN=1;SAF=3906;SAP=8484.78;SAR=0;SRF=2171;SRP=4717.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:81:1,80:1:36:80:2810:-249.541,-20.7852,0	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	0/1:252:154,98:154:5474:98:3453:-235.123,0,-416.931	0/1:153:99,54:99:3524:54:1900:-125.217,0,-271.314	0/1:87:52,35:52:1851:35:1239:-85.6194,0,-140.68	0/1:42:12,30:12:424:30:1031:-80.4516,0,-25.8532	0/1:56:32,24:32:1139:24:837:-58.788,0,-85.9607	0/1:111:65,46:65:2336:46:1610:-111.773,0,-177.085	0/1:102:51,51:51:1824:51:1793:-130.945,0,-133.736	0/1:57:34,23:34:1216:23:804:-55.5206,0,-92.5772	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/1:71:41,30:41:1468:30:1060:-74.33,0,-111.043	0/1:34:19,15:19:680:15:536:-38.3398,0,-51.2941	0/1:21:12,9:12:428:9:307:-21.6386,0,-32.5372	0/1:29:16,13:16:554:13:464:-33.3676,0,-41.455	0/1:42:24,18:24:843:18:632:-44.5626,0,-63.5447	1/1:21:0,21:0:0:21:736:-66.5624,-6.32163,0	1/1:16:0,16:0:0:16:560:-50.7276,-4.81648,0	1/1:17:0,17:0:0:17:584:-52.8808,-5.11751,0	0/1:107:55,52:55:1955:52:1855:-135.018,0,-144.015	1/1:156:0,156:0:0:156:5492:-494.409,-46.9607,0	1/1:45:1,44:1:36:44:1552:-136.237,-9.94808,0	0/1:68:44,24:44:1580:24:838:-55.266,0,-122.022	1/1:30:0,30:0:0:30:1045:-94.3462,-9.0309,0	1/1:75:0,75:0:0:75:2607:-234.875,-22.5773,0	1/1:174:0,174:0:0:174:6096:-548.477,-52.3792,0	1/1:132:0,132:0:0:132:4690:-422.26,-39.736,0	1/1:17:0,17:0:0:17:595:-53.8767,-5.11751,0	0/1:180:98,81:98:3490:81:2900:-206.922,0,-260.067	0/1:86:39,47:39:1387:47:1663:-124.068,0,-99.2396	0/1:96:48,48:48:1707:48:1706:-124.924,0,-125.016	0/1:7:1,6:1:36:6:208:-16.9519,0,-1.49106	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:27:21,6:21:752:6:212:-11.297,0,-59.8647	0/1:58:31,27:31:1091:27:956:-68.896,0,-81.039	0/1:45:29,16:29:1040:16:552:-36.4574,0,-80.368	0/1:25:12,13:12:432:13:446:-32.9396,0,-31.6954	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:95:0,95:0:0:95:3369:-303.426,-28.5979,0	0/1:13:7,6:7:252:6:188:-13.3134,0,-19.1156	0/1:202:110,92:110:3911:92:3267:-233.44,0,-291.377	0/1:13:10,3:10:352:3:108:-6.16178,0,-28.1048	0/1:26:17,9:17:608:9:324:-21.6791,0,-47.2252	1/1:82:0,82:0:0:82:2835:-255.389,-24.6845,0	0/1:148:70,78:70:2504:78:2728:-201.209,0,-181.06	0/1:151:101,50:101:3585:50:1762:-113.405,0,-277.402	0/1:98:56,42:56:1995:42:1484:-104.354,0,-150.322	1/1:105:0,105:0:0:105:3721:-335.091,-31.6082,0	0/1:104:51,53:51:1812:53:1865:-136.82,0,-132.054	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:114:57,57:57:2032:57:2006:-146.494,0,-148.835	1/1:44:0,44:0:0:44:1571:-141.681,-13.2453,0	0/1:14:10,4:10:342:4:131:-7.89905,0,-26.8946	0/1:121:67,54:67:2391:54:1864:-131.609,0,-179.022	1/1:19:0,19:0:0:19:663:-59.9935,-5.71957,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:71:37,34:37:1316:34:1216:-88.345,0,-97.3687	1/1:42:0,42:0:0:42:1452:-130.963,-12.6433,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:106:0,106:0:0:106:3758:-338.193,-31.9092,0	1/1:111:2,109:2:72:109:3805:-335.81,-26.5776,0	0/1:54:36,18:36:1280:18:618:-39.6851,0,-99.2476	1/1:69:0,69:0:0:69:2414:-217.245,-20.7711,0	1/1:99:3,96:3:104:96:3358:-292.734,-20.0992,0	0/1:110:88,22:88:3139:22:788:-38.1315,0,-249.623	0/1:21:11,10:11:392:10:356:-26.0596,0,-29.2984	0/1:40:24,16:24:847:16:555:-38.2348,0,-64.5075	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	1/1:18:0,18:0:0:18:640:-57.9284,-5.41854,0	1/1:75:0,75:0:0:75:2572:-231.728,-22.5773,0	0/1:88:63,25:63:2240:25:877:-52.7554,0,-175.373	1/1:106:0,106:0:0:106:3711:-334.187,-31.9092,0	1/1:103:2,101:2:68:101:3585:-316.397,-24.5484,0	0/1:194:100,94:100:3557:94:3267:-235.851,0,-261.938	0/1:69:34,35:34:1216:35:1218:-89.148,0,-88.9755	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	1/1:81:0,81:0:0:81:2853:-257.006,-24.3834,0	1/1:112:3,109:3:108:109:3853:-336.872,-23.6402,0	0/1:134:74,60:74:2613:60:2092:-148.206,0,-195.079	1/1:20:0,20:0:0:20:703:-63.5935,-6.0206,0	1/1:21:0,21:0:0:21:729:-65.9305,-6.32163,0	0/1:15:9,6:9:324:6:208:-14.5427,0,-24.9617	1/1:52:0,52:0:0:52:1763:-158.935,-15.6536,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:31:18,13:18:640:13:460:-32.4034,0,-48.5974	0/1:29:16,13:16:559:13:459:-32.9142,0,-41.9077	0/1:18:8,10:8:280:10:347:-26.1451,0,-20.1208	0/1:45:27,18:27:964:18:621:-42.6646,0,-73.5305	0/1:21:14,7:14:500:7:252:-16.7055,0,-39.0145	1/1:86:1,85:1:36:85:2947:-260.76,-22.2903,0	1/1:23:0,23:0:0:23:812:-73.4,-6.92369,0
chr02	26555865	.	ATGGA	ACGGA,ACGGG	201955	PASS	AB=0.522419,0.47363;ABP=28.4222,38.1691;AC=133,55;AF=0.707447,0.292553;AN=188;AO=7720,2782;CIGAR=1M1X3M,1M1X2M1X;DP=10550;DPB=10550.4;DPRA=0,1.28036;EPP=16766.8,6044.05;EPPR=13.8677;GTI=4;LEN=1,5;MEANALT=2.03191,2.41935;MQM=47.0321,29.1574;MQMR=60;NS=94;NUMALT=2;ODDS=2.30996;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=275178,98536;QR=180;RO=5;RPL=7720,2782;RPP=16766.8,6044.05;RPPR=13.8677;RPR=0,0;RUN=1,1;SAF=0,0;SAP=16766.8,6044.05;SAR=7720,2782;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40,0:0:0:40,0:1427,0:-127.629,-12.0412,0,-127.629,-12.0412,-127.629	1/1:181:0,181,0:0:0:181,0:6474,0:-577.983,-54.4864,0,-577.983,-54.4864,-577.983	1/2:141:0,81,60:0:0:81,60:2877,2130:-359.335,-127.159,-102.775,-232.48,0,-214.419	1/2:245:0,117,127:0:0:117,127:4145,4536:-624.182,-290.772,-255.552,-333.476,0,-295.245	1/2:77:0,39,38:0:0:39,38:1392,1352:-200.345,-87.6471,-75.907,-113.019,0,-101.58	1/2:45:0,23,22:0:0:23,22:827,784:-114.484,-47.7001,-40.7764,-67.0974,0,-60.4747	1/2:152:0,89,63:0:0:89,63:3162,2240:-400.25,-146.714,-119.923,-253.852,0,-234.887	1/2:213:0,112,101:0:0:112,101:3984,3547:-536.994,-216.258,-182.543,-321.045,0,-290.641	1/2:59:0,29,30:0:0:29,30:1031,1065:-148.505,-65.1705,-56.4406,-83.6487,0,-74.6178	1/2:121:0,67,54:0:0:67,54:2400,1927:-317.732,-123.876,-103.707,-194.174,0,-177.918	1/2:42:0,25,16:0:0:25,16:887,568:-107.988,-36.7135,-29.1878,-71.2543,0,-66.4378	1/2:71:0,34,37:0:0:34,37:1207,1303:-176.875,-79.0506,-68.8156,-98.1377,0,-86.9996	1/2:59:0,23,36:0:0:23,36:819,1274:-143.661,-77.6042,-70.6805,-66.3775,0,-55.5404	1/2:64:0,39,24:0:0:39,24:1390,849:-164.816,-53.6015,-41.8614,-111.203,0,-103.979	1/2:62:0,36,25:0:0:36,25:1277,894:-161.087,-58.3047,-47.4676,-102.849,0,-95.3229	1/2:34:0,20,13:0:0:20,13:720,458:-87.1856,-28.8366,-22.816,-58.4222,0,-54.5088	1/1:71:0,71,0:0:0:71,0:2513,0:-224.118,-21.3731,0,-224.118,-21.3731,-224.118	1/1:55:0,55,0:0:0:55,0:1956,0:-174.816,-16.5567,0,-174.816,-16.5567,-174.816	1/1:44:0,44,0:0:0:44,0:1566,0:-139.759,-13.2453,0,-139.759,-13.2453,-139.759	1/2:300:0,166,134:0:0:166,134:5917,4750:-781.708,-306.328,-256.357,-475.696,0,-435.358	1/1:182:0,182,0:0:0:182,0:6518,0:-581.955,-54.7875,0,-581.955,-54.7875,-581.955	1/1:117:0,108,0:0:0:108,0:3834,0:-340.354,-32.5112,0,-340.354,-32.5112,-340.354	1/2:90:0,44,46:0:0:44,46:1566,1640:-229.859,-104.881,-91.6358,-125.296,0,-111.448	1/1:153:0,152,0:0:0:152,0:5430,0:-484.07,-45.7566,0,-484.07,-45.7566,-484.07	1/1:76:0,75,0:0:0:75,0:2657,0:-236.005,-22.5773,0,-236.005,-22.5773,-236.005	1/1:380:0,375,4:0:0:375,4:13362,144:-1189.15,-112.886,0,-1178.88,-102.608,-1177.68	1/1:275:0,272,1:0:0:272,1:9692,36:-863.558,-81.8802,0,-861.247,-79.5706,-860.946	1/1:36:0,36,0:0:0:36,0:1292,0:-115.776,-10.8371,0,-115.776,-10.8371,-115.776	1/2:414:0,208,202:0:0:208,202:7420,7140:-1044.81,-446.612,-383.998,-598.247,0,-537.439	1/2:152:0,75,77:0:0:75,77:2667,2736:-390.75,-175.568,-152.991,-215.502,0,-192.323	1/2:179:0,99,80:0:0:99,80:3542,2817:-467.906,-181.979,-152.177,-286.243,0,-262.161	1/1:1:0,1,0:0:0:1,0:36,0:-3.57343,-0.30103,0,-3.57343,-0.30103,-3.57343	1/1:9:0,9,0:0:0:9,0:319,0:-28.5739,-2.70927,0,-28.5739,-2.70927,-28.5739	1/1:5:0,5,0:0:0:5,0:180,0:-16.4663,-1.50515,0,-16.4663,-1.50515,-16.4663	1/1:8:0,8,0:0:0:8,0:288,0:-25.9127,-2.40824,0,-25.9127,-2.40824,-25.9127	1/2:6:0,3,3:0:0:3,3:103,108:-14.6941,-6.59261,-5.68952,-8.40153,0,-7.49844	1/2:227:0,127,98:0:0:127,98:4514,3416:-579.5,-216.543,-178.312,-363.002,0,-333.501	1/2:211:0,114,96:0:0:114,96:4038,3384:-537.387,-213.823,-179.506,-323.58,0,-294.681	1/2:69:0,37,32:0:0:37,32:1312,1143:-173.987,-68.1008,-56.9627,-106.194,0,-96.5607	1/1:3:0,3,0:0:0:3,0:108,0:-10.0056,-0.90309,0,-10.0056,-0.90309,-10.0056	1/1:125:0,124,1:0:0:124,1:4440,36:-395.49,-37.3277,0,-392.87,-34.3826,-392.569	1/2:46:0,28,18:0:0:28,18:1007,639:-122.787,-41.4741,-33.0453,-81.6274,0,-76.2088	1/2:187:0,111,75:0:0:111,75:3964,2659:-487.444,-168.898,-135.483,-318.588,0,-296.01	1/2:98:0,58,40:0:0:58,40:2080,1400:-257.684,-90.6965,-73.2368,-167.3,0,-155.259	1/2:77:0,36,41:0:0:36,41:1278,1455:-197.283,-94.5835,-83.7464,-103.021,0,-90.6786	1/1:79:0,76,0:0:0:76,0:2720,0:-242.621,-22.8783,0,-242.621,-22.8783,-242.621	1/2:140:0,58,80:0:0:58,80:2062,2798:-335.882,-169.077,-151.618,-166.813,0,-142.73	1/2:247:0,142,105:0:0:142,105:5075,3689:-646.373,-237.645,-194.899,-409.038,0,-377.429	1/2:92:0,45,47:0:0:45,47:1606,1677:-237.687,-108.419,-94.8724,-129.59,0,-115.442	1/1:263:0,263,0:0:0:263,0:9384,0:-833.46,-79.1709,0,-833.46,-79.1709,-833.46	1/2:131:0,67,63:0:0:67,63:2388,2235:-331.202,-138.788,-118.619,-192.462,0,-173.497	1/2:11:0,9,2:0:0:9,2:318,72:-30.3932,-4.91319,-2.20392,-25.7807,0,-25.1786	1/2:150:0,89,60:0:0:89,60:3168,2123:-383.377,-127.747,-100.956,-255.694,0,-237.632	1/1:36:0,36,0:0:0:36,0:1288,0:-115.268,-10.8371,0,-115.268,-10.8371,-115.268	1/2:10:0,3,7:0:0:3,7:108,252:-24.1893,-15.4045,-14.5014,-9.11746,0,-7.01025	1/2:166:0,77,89:0:0:77,89:2735,3180:-424.381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chr02	26611944	.	A	G	155632	PASS	AB=0.465941;ABP=60.4018;AC=134;AF=0.712766;AN=188;AO=7555;CIGAR=1X;DP=10606;DPB=10606;DPRA=0;EPP=16408.5;EPPR=6615.14;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9497;MQMR=59.9905;NS=94;NUMALT=1;ODDS=4.85977;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268625;QR=108904;RO=3045;RPL=0;RPP=16408.5;RPPR=6615.14;RPR=7555;RUN=1;SAF=7555;SAP=16408.5;SAR=0;SRF=3045;SRP=6615.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:128:0,128:0:0:128:4538:-408.578,-38.5318,0	1/1:129:0,129:0:0:129:4579:-412.273,-38.8329,0	0/1:156:89,67:89:3170:67:2381:-167.586,0,-238.561	0/1:240:133,107:133:4776:107:3795:-269.498,0,-357.748	0/1:74:53,21:53:1893:21:748:-45.3691,0,-148.37	0/1:89:31,58:31:1116:58:2084:-161.03,0,-73.96	0/1:161:77,84:77:2722:84:2984:-220.325,0,-196.756	0/1:209:107,102:107:3840:102:3603:-261.556,0,-282.88	0/1:162:78,84:78:2796:84:2989:-220.475,0,-203.112	0/1:98:60,38:60:2148:38:1364:-93.5598,0,-164.08	0/1:92:55,35:55:1976:35:1260:-86.253,0,-150.662	0/1:111:59,52:59:2120:52:1864:-134.625,0,-157.654	0/1:98:56,42:56:2008:42:1504:-106.154,0,-151.492	0/1:141:79,62:79:2840:62:2194:-155.272,0,-213.392	0/1:71:36,35:36:1292:35:1230:-89.6268,0,-95.2106	0/1:82:46,36:46:1652:36:1277:-90.5466,0,-124.284	1/1:94:0,94:0:0:94:3357:-302.345,-28.2968,0	1/1:69:0,68:0:0:68:2412:-216.965,-20.47,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:185:0,185:0:0:185:6610:-594.932,-55.6906,0	1/1:151:0,151:0:0:151:5315:-478.407,-45.4555,0	1/1:134:0,134:0:0:134:4770:-429.456,-40.338,0	0/1:115:56,58:56:2016:58:2001:-145.82,0,-147.185	1/1:164:0,164:0:0:164:5881:-529.396,-49.3689,0	1/1:97:0,97:0:0:97:3379:-304.32,-29.1999,0	1/1:238:1,237:1:36:237:8402:-752.585,-68.0469,0	1/1:224:0,223:0:0:223:7955:-715.583,-67.1297,0	1/1:53:0,53:0:0:53:1889:-170.286,-15.9546,0	1/1:302:0,302:0:0:302:10716:-964.328,-90.9111,0	0/1:88:45,43:45:1616:43:1548:-113.122,0,-119.239	0/1:152:89,63:89:3177:63:2230:-155.204,0,-240.396	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/1:247:115,132:115:4117:132:4699:-348.712,0,-296.358	0/1:85:50,35:50:1785:35:1256:-87.7577,0,-135.343	0/1:83:47,36:47:1677:36:1281:-90.5609,0,-126.23	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:138:1,137:1:36:137:4908:-438.273,-37.9439,0	0/1:59:32,27:32:1144:27:953:-68.3225,0,-85.5087	0/1:221:131,90:131:4621:90:3228:-224.209,0,-349.524	0/1:101:46,55:46:1637:55:1968:-146.991,0,-117.213	0/1:56:27,28:27:942:28:985:-72.0453,0,-68.1737	1/1:123:0,123:0:0:123:4405:-396.62,-37.0267,0	0/1:89:53,36:53:1889:36:1262:-87.0868,0,-143.495	0/1:173:90,83:90:3236:83:2931:-211.941,0,-239.382	0/1:108:54,54:54:1944:54:1936:-142.005,0,-142.725	1/1:119:0,119:0:0:119:4205:-378.627,-35.8226,0	0/1:173:77,96:77:2752:96:3425:-256.382,0,-195.844	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:157:72,85:72:2558:85:3007:-223.596,0,-183.202	1/1:48:0,48:0:0:48:1694:-152.653,-14.4494,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:142:84,58:84:2986:58:2069:-143.733,0,-226.224	1/1:82:0,82:0:0:82:2910:-262.133,-24.6845,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:127:73,54:73:2575:54:1925:-135.294,0,-193.765	1/1:137:3,134:3:108:134:4769:-419.291,-31.1659,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:172:0,172:0:0:172:6161:-554.585,-51.7772,0	1/1:161:0,161:0:0:161:5776:-519.953,-48.4658,0	0/1:94:58,36:58:2084:36:1277:-86.9343,0,-159.533	1/1:86:0,86:0:0:86:3065:-276.078,-25.8886,0	1/1:170:0,170:0:0:170:6002:-540.284,-51.1751,0	0/1:34:21,13:21:756:13:468:-32.2246,0,-58.1322	0/1:42:25,17:25:900:17:612:-42.7702,0,-68.6778	0/1:61:42,19:42:1504:19:680:-42.9756,0,-117.292	0/1:117:53,64:53:1908:64:2296:-171.681,0,-136.777	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	1/1:72:0,72:0:0:72:2547:-229.476,-21.6742,0	0/1:76:63,13:63:2252:13:453:-18.2213,0,-180.065	1/1:281:0,281:0:0:281:9884:-889.488,-84.5894,0	1/1:220:0,220:0:0:220:7833:-704.998,-66.2266,0	0/1:182:101,81:101:3620:81:2840:-201.03,0,-271.218	0/1:117:66,51:66:2376:51:1794:-126.518,0,-178.877	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:228:0,228:0:0:228:8120:-730.813,-68.6348,0	1/1:101:0,101:0:0:101:3590:-323.249,-30.404,0	0/1:296:127,169:127:4548:169:6023:-453.065,0,-320.359	1/1:113:0,113:0:0:113:4064:-365.943,-34.0164,0	1/1:83:0,83:0:0:83:2939:-264.741,-24.9855,0	0/1:106:49,57:49:1726:57:2048:-152.682,0,-123.712	1/1:236:2,234:2:72:234:8382:-747.541,-64.2064,0	0/1:50:28,22:28:1004:22:792:-56.5542,0,-75.6244	0/1:86:47,39:47:1673:39:1381:-98.6896,0,-124.967	0/1:112:48,64:48:1728:64:2247:-168.772,0,-122.09	0/1:78:54,24:54:1944:24:864:-54.6007,0,-151.756	0/1:121:61,60:61:2192:60:2114:-154.101,0,-161.121	0/1:79:49,30:49:1764:30:1065:-72.3738,0,-135.262	1/1:99:0,99:0:0:99:3482:-313.588,-29.802,0	1/1:148:0,148:0:0:148:5282:-475.514,-44.5524,0
chr02	26611974	.	G	A	346989	PASS	AB=0.4622;ABP=132.863;AC=134;AF=0.712766;AN=188;AO=13299;CIGAR=1X;DP=18952;DPB=18952;DPRA=0;EPP=28812;EPPR=12243.6;GTI=0;LEN=1;MEANALT=1.11702;MQM=56.3306;MQMR=59.9846;NS=94;NUMALT=1;ODDS=3.29965;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=467838;QR=200442;RO=5641;RPL=7396;RPP=366.971;RPPR=47.772;RPR=5903;RUN=1;SAF=7404;SAP=374.814;SAR=5895;SRF=2992;SRP=48.2986;SRR=2649;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:156:0,156:0:0:156:5537:-497.251,-46.9607,0	1/1:383:2,381:2:72:381:13331:-1188.09,-108.458,0	0/1:273:154,119:154:5448:119:4198:-295.113,0,-408.273	0/1:414:217,197:217:7697:197:6979:-502.994,0,-568.141	0/1:131:82,49:82:2922:49:1712:-114.647,0,-223.777	0/1:143:65,78:65:2318:78:2761:-205.365,0,-165.832	0/1:272:130,142:130:4607:142:4980:-366.166,0,-332.916	0/1:376:186,190:186:6558:190:6525:-472.355,0,-477.111	0/1:254:130,124:130:4627:124:4371:-316.374,0,-340.131	0/1:209:128,79:128:4525:79:2836:-192.492,0,-344.737	0/1:169:77,92:77:2752:92:3132:-230.769,0,-197.048	0/1:182:103,79:103:3657:79:2791:-196.265,0,-274.547	0/1:158:80,78:80:2849:78:2742:-198.312,0,-209.084	0/1:219:117,102:117:4165:102:3573:-255.405,0,-309.108	0/1:120:62,58:62:2211:58:2031:-146.839,0,-163.131	0/1:184:89,95:89:3167:95:3238:-235.698,0,-229.866	1/1:168:0,167:0:0:167:5798:-520.476,-50.272,0	1/1:127:0,127:0:0:127:4424:-397.436,-38.2308,0	1/1:144:1,143:1:36:143:4950:-440.672,-39.75,0	1/1:391:0,391:0:0:391:13813:-1241.65,-117.703,0	1/1:254:0,254:0:0:254:8958:-805.088,-76.4616,0	1/1:174:1,173:1:36:173:6076:-543.178,-48.7809,0	0/1:137:67,70:67:2408:70:2469:-180.609,0,-175.735	1/1:245:0,245:0:0:245:8711:-782.38,-73.7524,0	1/1:136:0,136:0:0:136:4802:-431.936,-40.9401,0	1/1:398:1,397:1:36:397:14044:-1259.44,-116.212,0	1/1:379:0,379:0:0:379:13380:-1201.95,-114.09,0	1/1:80:2,78:2:57:78:2753:-242.302,-18.6691,0	1/1:466:0,466:0:0:466:16465:-1480.94,-140.28,0	0/1:170:79,91:79:2832:91:3198:-236.423,0,-203.943	0/1:244:130,114:130:4623:114:4014:-287.729,0,-342.782	0/1:9:5,4:5:180:4:140:-10.2236,0,-13.8428	0/1:48:27,21:27:957:21:737:-51.7521,0,-71.9944	1/1:7:0,7:0:0:7:252:-22.9755,-2.10721,0	1/1:8:0,8:0:0:8:280:-25.4431,-2.40824,0	0/1:24:13,11:13:468:11:388:-27.99,0,-35.2349	0/1:428:214,214:214:7574:214:7459:-542.162,0,-552.861	0/1:220:129,91:129:4587:91:3186:-219.858,0,-346.77	0/1:158:77,81:77:2726:81:2799:-203.825,0,-198.021	1/1:6:0,6:0:0:6:208:-19.0485,-1.80618,0	1/1:260:1,259:1:36:259:9115:-814.928,-74.6695,0	0/1:107:57,50:57:2028:50:1757:-125.971,0,-150.581	0/1:352:216,136:216:7677:136:4845:-329.629,0,-585.003	0/1:162:69,93:69:2476:93:3261:-244.774,0,-174.327	0/1:120:71,49:71:2495:49:1711:-118.056,0,-188.676	1/1:188:0,188:0:0:188:6605:-593.97,-56.5936,0	0/1:194:117,76:117:4159:76:2646:-179.284,0,-316.037	0/1:322:189,131:189:6749:131:4653:-321.946,0,-510.795	0/1:206:112,94:112:3950:94:3329:-237.64,0,-293.678	1/1:289:0,289:0:0:289:10225:-918.329,-86.9977,0	0/1:318:169,149:169:6008:149:5283:-379.697,0,-445.093	0/1:18:13,5:13:464:5:180:-11.1194,0,-36.6786	0/1:334:162,172:162:5762:172:6041:-441.087,0,-418.143	1/1:100:0,100:0:0:100:3533:-316.983,-30.103,0	0/1:36:24,12:24:864:12:417:-26.8522,0,-67.2455	0/1:287:157,130:157:5594:130:4589:-326.075,0,-417.186	1/1:96:0,96:0:0:96:3393:-305.519,-28.8989,0	1/1:11:0,11:0:0:11:392:-35.5849,-3.31133,0	0/1:28:16,12:16:576:12:419:-29.6021,0,-43.7461	0/1:165:95,70:95:3390:70:2473:-172.85,0,-255.645	1/1:254:7,247:7:252:247:8578:-748.207,-53.4327,0	1/1:22:0,22:0:0:22:766:-69.1899,-6.62266,0	1/1:288:1,287:1:36:287:10154:-909.608,-83.0984,0	1/1:384:1,381:1:36:381:13351:-1196.2,-111.729,0	0/1:177:102,75:102:3630:75:2650:-184.893,0,-273.623	1/1:152:1,151:1:36:151:5365:-479.051,-42.1583,0	1/1:265:0,265:0:0:265:9372:-842.253,-79.773,0	0/1:214:158,56:158:5571:56:1958:-111.752,0,-437.081	0/1:74:33,41:33:1184:41:1411:-104.782,0,-84.5921	0/1:202:119,83:119:4167:83:2919:-200.697,0,-314.406	0/1:226:116,110:116:4109:110:3815:-275.265,0,-301.962	1/1:46:0,46:0:0:46:1618:-145.861,-13.8474,0	1/1:142:0,142:0:0:142:5004:-449.238,-42.7463,0	0/1:152:102,50:102:3639:50:1709:-107.544,0,-281.959	1/1:482:0,482:0:0:482:17081:-1533.79,-145.096,0	1/1:362:1,361:1:36:361:12734:-1141.28,-105.375,0	0/1:302:151,151:151:5360:151:5335:-387.694,0,-391.622	0/1:283:158,125:158:5577:125:4393:-309.266,0,-416.867	0/1:26:16,10:16:572:10:356:-24.5118,0,-43.9866	1/1:319:0,319:0:0:319:11319:-1017.68,-96.0286,0	1/1:198:0,198:0:0:198:6958:-623.789,-59.6039,0	0/1:549:268,281:268:9549:281:9956:-729.129,0,-694.103	1/1:206:0,206:0:0:206:7213:-648.589,-62.0122,0	1/1:132:1,131:1:21:131:4592:-411.163,-37.636,0	0/1:183:94,89:94:3351:89:3127:-226.468,0,-246.719	1/1:333:2,330:2:72:330:11602:-1036.56,-93.4651,0	0/1:87:48,39:48:1683:39:1362:-96.4107,0,-125.563	0/1:153:85,67:85:3019:67:2318:-162.539,0,-225.944	0/1:180:84,94:84:3008:94:3280:-241.068,0,-217.152	0/1:142:78,64:78:2796:64:2241:-158.605,0,-209.134	0/1:196:98,98:98:3507:98:3444:-250.738,0,-256.838	0/1:126:81,45:81:2908:45:1553:-102.08,0,-224.025	1/1:204:0,204:0:0:204:7205:-647.623,-61.4101,0	1/1:234:0,234:0:0:234:8191:-736.857,-70.441,0
chr02	26612025	.	ACCG	TCCA,TCCG	203824	PASS	AB=0.496069,0.501685;ABP=3.72735,3.142;AC=134,54;AF=0.712766,0.287234;AN=188;AO=6916,2686;CIGAR=1X2M1X,1X3M;DP=9620;DPB=9621.75;DPRA=0,1.07494;EPP=15020.9,5835.59;EPPR=0;GTI=0;LEN=4,1;MEANALT=1.80851,2.20339;MQM=51.5421,59.9583;MQMR=0;NS=94;NUMALT=2;ODDS=4.88649;PAIRED=0,0;PAIREDR=0;PAO=3.5,3.5;PQA=126,126;PQR=0;PRO=0;QA=246320,96315;QR=0;RO=0;RPL=6916,2686;RPP=15020.9,5835.59;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=15020.9,5835.59;SAR=6916,2686;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35,0:0:0:35,0:1252,0:-111.646,-10.5361,0,-111.646,-10.5361,-111.646	1/1:291:0,291,0:0:0:291,0:10368,0:-926.715,-87.5997,0,-926.715,-87.5997,-926.715	1/2:127:0,60,67:0:0:60,67:2135,2408:-369.793,-196.807,-178.745,-173.343,0,-153.174	1/2:188:0,102,86:0:0:102,86:3586,3088:-543.435,-252.198,-221.493,-291.532,0,-265.644	1/2:62:0,32,30:0:0:32,30:1137,1076:-180.44,-88.122,-78.489,-92.6739,0,-83.643	1/2:58:0,25,33:0:0:25,33:873,1173:-166.33,-95.9424,-88.4167,-70.7381,0,-60.8041	1/2:121:0,65,56:0:0:65,56:2287,2012:-350.207,-164.495,-144.928,-186.067,0,-169.21	1/2:194:0,107,87:0:0:107,87:3821,3120:-563.478,-254.828,-222.618,-309.006,0,-282.817	1/2:102:0,51,51:0:0:51,51:1791,1832:-294.443,-149.808,-134.456,-144.989,0,-129.636	1/2:121:0,48,72:0:0:48,72:1710,2577:-349.112,-210.144,-195.694,-138.965,0,-117.291	1/2:88:0,64,24:0:0:64,24:2271,860:-254.677,-70.4971,-51.2312,-184.537,0,-177.312	1/2:84:0,36,48:0:0:36,48:1285,1728:-245.495,-141.356,-130.519,-104.496,0,-90.0463	1/2:65:0,40,25:0:0:40,25:1428,900:-188.782,-73.7375,-61.6963,-115.345,0,-107.819	1/2:87:0,48,39:0:0:48,39:1712,1396:-253.124,-114.198,-99.7489,-139.282,0,-127.542	1/2:53:0,26,26:0:0:26,26:925,921:-150.262,-75.0188,-67.192,-75.238,0,-67.4112	1/2:108:0,64,44:0:0:64,44:2294,1584:-315.754,-129.606,-110.34,-186.507,0,-173.261	1/1:94:0,94,0:0:0:94,0:3366,0:-300.795,-28.2968,0,-300.795,-28.2968,-300.795	1/1:77:0,77,0:0:0:77,0:2741,0:-245.464,-23.1793,0,-245.464,-23.1793,-245.464	1/1:91:0,89,2:0:0:89,2:3177,72:-283.594,-26.7917,0,-277.719,-20.557,-277.117	1/1:234:0,233,1:0:0:233,1:8314,21:-746.487,-70.14,0,-744.899,-68.3411,-744.598	1/1:127:0,127,0:0:0:127,0:4514,0:-404.813,-38.2308,0,-404.813,-38.2308,-404.813	1/1:55:0,55,0:0:0:55,0:1964,0:-176.595,-16.5567,0,-176.595,-16.5567,-176.595	1/2:31:0,18,13:0:0:18,13:647,453:-89.7223,-37.1862,-31.7677,-52.8883,0,-48.975	1/1:100:0,100,0:0:0:100,0:3575,0:-319.573,-30.103,0,-319.573,-30.103,-319.573	1/1:49:0,49,0:0:0:49,0:1753,0:-157.513,-14.7505,0,-157.513,-14.7505,-157.513	1/1:200:0,200,0:0:0:200,0:7123,0:-639.972,-60.206,0,-639.972,-60.206,-639.972	1/1:173:0,173,0:0:0:173,0:6152,0:-551.322,-52.0782,0,-551.322,-52.0782,-551.322	1/1:33:0,32,0:0:0:32,0:1143,0:-102.329,-9.63296,0,-102.329,-9.63296,-102.329	1/1:202:0,201,0:0:0:201,0:7173,0:-643.996,-60.507,0,-643.996,-60.507,-643.996	1/2:96:0,58,38:0:0:58,38:2067,1368:-279.809,-111.982,-94.5219,-168.185,0,-156.746	1/2:103:0,62,41:0:0:62,41:2195,1476:-299.177,-120.794,-102.13,-178.74,0,-166.398	1/2:4:0,2,2:0:0:2,2:65,72:-11.4547,-6.23466,-5.6326,-5.5622,0,-4.96014	1/2:28:0,11,17:0:0:11,17:384,612:-81.1105,-50.2959,-46.9846,-31.1653,0,-26.0478	1/1:4:0,4,0:0:0:4,0:144,0:-13.2414,-1.20412,0,-13.2414,-1.20412,-13.2414	1/1:7:0,7,0:0:0:7,0:251,0:-22.8166,-2.10721,0,-22.8166,-2.10721,-22.8166	1/2:7:0,4,3:0:0:4,3:141,108:-20.5871,-9.17208,-7.96796,-11.7709,0,-10.8678	1/2:205:0,106,99:0:0:106,99:3775,3556:-597.312,-290.444,-258.535,-307.225,0,-277.423	1/2:141:0,61,79:0:0:61,79:2175,2836:-407.375,-231.336,-212.973,-176.035,0,-152.254	1/2:93:0,59,34:0:0:59,34:2116,1224:-270.97,-100.232,-82.4712,-171.097,0,-160.862	1/1:2:0,2,0:0:0:2,0:68,0:-6.43573,-0.60206,0,-6.43573,-0.60206,-6.43573	1/1:137:0,137,0:0:0:137,0:4892,0:-438.285,-41.2411,0,-438.285,-41.2411,-438.285	1/2:52:0,27,25:0:0:27,25:966,900:-152.226,-73.7907,-65.6628,-78.7931,0,-71.2673	1/2:144:0,54,90:0:0:54,90:1929,3225:-419.879,-263.377,-247.122,-156.858,0,-129.766	1/2:69:0,45,24:0:0:45,24:1602,864:-201.191,-70.8578,-57.3115,-130.691,0,-123.467	1/2:68:0,24,44:0:0:24,44:863,1580:-199.298,-129.016,-121.792,-70.6401,0,-57.3948	1/1:80:0,80,0:0:0:80,0:2834,0:-254.434,-24.0824,0,-254.434,-24.0824,-254.434	1/2:121:0,53,68:0:0:53,68:1882,2429:-350.785,-198.394,-182.439,-152.745,0,-132.275	1/2:167:0,62,104:0:0:62,104:2226,3732:-485.633,-304.542,-285.878,-181.217,0,-149.91	1/2:106:0,47,58:0:0:47,58:1671,2084:-305.925,-170.01,-155.862,-135.912,0,-118.452	1/1:196:0,196,0:0:0:196,0:6969,0:-624.552,-59.0019,0,-624.552,-59.0019,-624.552	1/2:162:0,66,96:0:0:66,96:2339,3444:-471.511,-281.269,-261.401,-190.597,0,-161.699	1/2:14:0,5,9:0:0:5,9:180,324:-41.4426,-26.7966,-25.2914,-15.0053,0,-12.296	1/2:200:0,107,93:0:0:107,93:3810,3321:-579.009,-271.105,-238.895,-308.259,0,-280.263	1/1:59:0,59,0:0:0:59,0:2102,0:-188.995,-17.7608,0,-188.995,-17.7608,-188.995	1/2:29:0,16,13:0:0:16,13:565,468:-84.3225,-38.5463,-33.7298,-46.1322,0,-42.2188	1/2:167:0,89,77:0:0:89,77:3142,2768:-480.61,-225.822,-199.03,-254.785,0,-231.605	1/1:20:0,20,0:0:0:20,0:703,0:-63.4813,-6.0206,0,-63.4813,-6.0206,-63.4813	1/1:11:0,11,0:0:0:11,0:385,0:-34.8625,-3.31133,0,-34.8625,-3.31133,-34.8625	1/2:16:0,5,11:0:0:5,11:175,392:-46.5194,-32.3087,-30.8036,-14.5621,0,-11.2508	1/2:41:0,16,25:0:0:16,25:572,900:-119.919,-73.7953,-68.9788,-46.48,0,-38.9542	1/1:140:0,138,1:0:0:138,1:4953,36:-443.526,-41.5421,0,-440.589,-38.6046,-440.288	1/1:15:0,15,0:0:0:15,0:532,0:-48.1111,-4.51545,0,-48.1111,-4.51545,-48.1111	1/1:137:0,137,0:0:0:137,0:4889,0:-438.993,-41.2411,0,-438.993,-41.2411,-438.993	1/1:268:0,267,1:0:0:267,1:9509,36:-853.249,-80.375,0,-850.312,-77.0778,-850.011	1/2:94:0,47,47:0:0:47,47:1676,1688:-273.978,-138.059,-123.91,-136.277,0,-122.128	1/1:77:0,77,0:0:0:77,0:2744,0:-246.808,-23.1793,0,-246.808,-23.1793,-246.808	1/1:119:0,119,0:0:0:119,0:4234,0:-379.733,-35.8226,0,-379.733,-35.8226,-379.733	1/2:188:0,47,141:0:0:47,141:1669,5053:-547.885,-412.232,-398.084,-136.008,0,-93.5627	1/2:40:0,30,9:0:0:30,9:1071,324:-113.345,-26.4376,-17.4067,-86.9077,0,-84.1985	1/2:156:0,76,79:0:0:76,79:2702,2836:-449.751,-231.277,-208.399,-218.411,0,-194.629	1/2:125:0,61,63:0:0:61,63:2169,2260:-360.32,-184.338,-165.975,-175.979,0,-157.014	1/1:16:0,16,0:0:0:16,0:566,0:-51.1967,-4.81648,0,-51.1967,-4.81648,-51.1967	1/1:82:0,81,0:0:0:81,0:2884,0:-257.809,-24.3834,0,-257.809,-24.3834,-257.809	1/2:87:0,45,42:0:0:45,42:1607,1508:-253.26,-123.371,-109.825,-130.246,0,-117.602	1/1:237:0,237,0:0:0:237,0:8402,0:-752.558,-71.3441,0,-752.558,-71.3441,-752.558	1/1:159:0,158,0:0:0:158,0:5638,0:-505.942,-47.5627,0,-505.942,-47.5627,-505.942	1/2:142:0,90,52:0:0:90,52:3181,1868:-409.178,-152.746,-125.653,-256.788,0,-241.135	1/2:189:0,96,93:0:0:96,93:3433,3317:-548.829,-270.692,-241.793,-278.434,0,-250.438	1/2:17:0,5,12:0:0:5,12:180,432:-50.2076,-35.6088,-34.1037,-14.9572,0,-11.3448	1/1:114:0,114,0:0:0:114,0:4081,0:-365.875,-34.3174,0,-365.875,-34.3174,-365.875	1/1:122:0,122,0:0:0:122,0:4344,0:-387.806,-36.7257,0,-387.806,-36.7257,-387.806	1/2:288:0,136,152:0:0:136,152:4842,5429:-835.783,-442.968,-402.028,-393.17,0,-347.414	1/1:111:0,111,0:0:0:111,0:3936,0:-353.351,-33.4143,0,-353.351,-33.4143,-353.351	1/1:62:0,62,0:0:0:62,0:2208,0:-198.623,-18.6639,0,-198.623,-18.6639,-198.623	1/2:80:0,33,47:0:0:33,47:1187,1692:-235.1,-138.418,-128.484,-97.0405,0,-82.8921	1/1:120:0,119,0:0:0:119,0:4232,0:-379.789,-35.8226,0,-379.789,-35.8226,-379.789	1/2:44:0,23,20:0:0:23,20:820,716:-124.792,-58.3882,-51.4646,-66.401,0,-60.3804	1/2:85:0,45,40:0:0:45,40:1617,1432:-248.191,-117.136,-103.59,-131.412,0,-119.371	1/2:76:0,38,38:0:0:38,38:1353,1364:-220.639,-111.622,-100.182,-109.373,0,-97.9342	1/2:70:0,46,22:0:0:46,22:1656,792:-198.928,-64.6232,-50.7758,-134.304,0,-127.681	1/2:87:0,48,39:0:0:48,39:1716,1404:-254.134,-114.919,-100.47,-139.573,0,-127.833	1/2:52:0,19,33:0:0:19,33:683,1188:-152.916,-97.2946,-91.575,-55.9807,0,-46.0467	1/1:124:0,123,1:0:0:123,1:4383,36:-392.062,-37.0267,0,-389.124,-33.7294,-388.823	1/1:98:0,98,0:0:0:98,0:3518,0:-316.275,-29.5009,0,-316.275,-29.5009,-316.275
chr02	26649535	.	T	A	105947	PASS	AB=0.483687;ABP=11.9368;AC=134;AF=0.712766;AN=188;AO=5142;CIGAR=1X;DP=7150;DPB=7150;DPRA=15.3656;EPP=11168.7;EPPR=4358.98;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.8993;MQMR=59.7198;NS=94;NUMALT=1;ODDS=1.43466;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183074;QR=71482;RO=2006;RPL=0;RPP=11168.7;RPPR=4358.98;RPR=5142;RUN=1;SAF=0;SAP=11168.7;SAR=5142;SRF=0;SRP=4358.98;SRR=2006;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	1/1:81:1,80:1:36:80:2845:-252.688,-20.7852,0	0/1:74:46,28:46:1637:28:996:-67.6787,0,-125.303	0/1:161:75,86:75:2671:86:3063:-227.34,0,-192.115	0/1:55:20,35:20:708:35:1231:-94.5351,0,-47.4839	0/1:41:17,24:17:604:24:860:-65.3796,0,-42.3484	0/1:72:40,32:40:1440:32:1144:-81.595,0,-108.224	0/1:133:72,61:72:2576:61:2188:-157.146,0,-192.009	0/1:85:46,39:46:1644:39:1381:-98.9992,0,-122.661	0/1:119:70,49:70:2488:49:1760:-122.859,0,-188.346	0/1:56:20,36:20:716:36:1266:-97.3786,0,-47.8963	0/1:74:39,35:39:1396:35:1200:-86.0207,0,-103.663	0/1:74:37,37:37:1306:37:1304:-95.3797,0,-95.5076	0/1:69:29,40:29:1036:40:1423:-107.593,0,-72.7828	0/1:70:35,35:35:1252:35:1243:-91.101,0,-91.7922	0/1:57:31,26:31:1099:26:932:-66.9952,0,-82.0607	1/1:48:0,48:0:0:48:1720:-155.074,-14.4494,0	1/1:73:0,73:0:0:73:2616:-235.687,-21.9752,0	1/1:26:0,26:0:0:26:932:-84.197,-7.82678,0	1/1:85:0,85:0:0:85:3021:-272.119,-25.5876,0	1/1:109:0,109:0:0:109:3895:-350.699,-32.8123,0	1/1:88:0,88:0:0:88:3135:-282.372,-26.4906,0	0/1:32:18,14:18:631:14:504:-36.0651,0,-47.4689	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	1/1:66:0,66:0:0:66:2336:-210.497,-19.868,0	1/1:292:0,292:0:0:292:10409:-936.698,-87.9008,0	1/1:137:0,137:0:0:137:4848:-436.28,-41.2411,0	1/1:43:0,43:0:0:43:1522:-137.183,-12.9443,0	1/1:195:0,195:0:0:195:6933:-624.033,-58.7009,0	0/1:122:64,58:64:2296:58:2072:-150.025,0,-169.818	0/1:89:36,53:36:1275:53:1855:-140.434,0,-88.2469	0/1:14:7,7:7:248:7:248:-18.4498,0,-18.4498	0/1:11:2,9:2:72:9:316:-25.4675,0,-3.52539	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:176:-16.1846,-1.50515,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:208:106,102:106:3775:102:3647:-265.818,0,-277.319	0/1:146:76,70:76:2716:70:2482:-179.609,0,-200.719	0/1:63:24,39:24:851:39:1382:-105.703,0,-57.9446	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:113:0,113:0:0:113:4044:-364.148,-34.0164,0	0/1:25:17,8:17:599:8:280:-18.0136,0,-46.6898	0/1:94:55,39:55:1960:39:1404:-98.3609,0,-148.354	0/1:64:38,26:38:1342:26:927:-64.4806,0,-101.812	0/1:77:44,33:44:1568:33:1180:-83.3275,0,-117.969	1/1:51:0,51:0:0:51:1828:-164.798,-15.3525,0	0/1:112:63,49:63:2256:49:1742:-123.349,0,-169.588	0/1:136:73,63:73:2592:63:2256:-162.362,0,-192.349	0/1:98:58,40:58:2072:40:1440:-100.396,0,-157.236	1/1:103:1,102:1:36:102:3647:-324.805,-27.4078,0	0/1:82:43,39:43:1528:39:1383:-100.084,0,-113.129	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:70:33,37:33:1184:37:1323:-98.2991,0,-85.7958	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:16:10,6:10:345:6:216:-14.974,0,-26.5643	0/1:79:36,43:36:1243:43:1540:-115.11,0,-88.3854	1/1:29:0,29:0:0:29:1023:-92.3817,-8.72987,0	1/1:11:0,11:0:0:11:387:-35.165,-3.31133,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:52:21,31:21:756:31:1112:-84.7378,0,-52.7137	1/1:128:2,126:2:72:126:4492:-397.61,-31.6951,0	1/1:12:0,12:0:0:12:405:-36.7722,-3.61236,0	1/1:203:0,203:0:0:203:7221:-649.939,-61.1091,0	1/1:127:0,127:0:0:127:4517:-406.696,-38.2308,0	0/1:85:46,39:46:1644:39:1400:-100.712,0,-122.643	1/1:66:0,66:0:0:66:2336:-210.466,-19.868,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:87:52,35:52:1864:35:1256:-87.1549,0,-141.832	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:54:29,25:29:1040:25:875:-62.8105,0,-77.6587	0/1:86:53,33:53:1887:33:1188:-81.34,0,-144.219	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:93:0,93:0:0:93:3315:-298.568,-27.9958,0	0/1:65:21,44:21:744:44:1557:-120.851,0,-47.7155	1/1:63:1,62:1:36:62:2196:-194.304,-15.3666,0	1/1:183:0,183:0:0:183:6528:-587.6,-55.0885,0	0/1:75:41,34:41:1472:34:1192:-84.9996,0,-110.199	0/1:91:45,46:45:1598:46:1637:-120.223,0,-116.651	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:111:0,110:0:0:110:3910:-351.732,-33.1133,0	1/1:58:0,58:0:0:58:2037:-183.595,-17.4597,0	0/1:96:66,30:66:2348:30:1072:-67.8936,0,-182.661	1/1:115:0,115:0:0:115:4102:-369.365,-34.6185,0	1/1:59:0,59:0:0:59:2098:-189.087,-17.7608,0	0/1:97:40,57:40:1428:57:2011:-152.06,0,-99.6172	1/1:134:2,132:2:72:132:4704:-416.681,-33.5013,0	0/1:61:30,31:30:1072:31:1099:-80.8548,0,-78.4296	0/1:67:40,27:40:1415:27:968:-67.2684,0,-107.418	0/1:68:34,33:34:1216:33:1169:-84.9839,0,-89.2169	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.2811	0/1:75:27,48:27:964:48:1719:-132.416,0,-64.4771	0/1:65:40,25:40:1436:25:892:-61.0323,0,-109.941	1/1:95:0,95:0:0:95:3384:-304.774,-28.5979,0	1/1:108:1,107:1:36:107:3839:-342.105,-28.913,0
chr02	26649566	.	TGC	TGG,AGG	154409	PASS	AB=0.485298,0.510867;ABP=10.3531,7.02178;AC=134,54;AF=0.712766,0.287234;AN=188;AO=5225,2009;CIGAR=2M1X,1X1M1X;DP=7261;DPB=7261;DPRA=15.6043,0.971829;EPP=11210.4,4348.14;EPPR=0;GTI=1;LEN=1,3;MEANALT=1.88172,2.22414;MQM=59.8844,59.7143;MQMR=0;NS=94;NUMALT=2;ODDS=0.940846;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=186475,70444;QR=0;RO=0;RPL=5209,2007;RPP=11210.4,4348.14;RPPR=0;RPR=16,2;RUN=1,1;SAF=0,0;SAP=11349,4365.5;SAR=5225,2009;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:86:0,85,1:0:0:85,1:3050,36:-274.368,-25.5876,0,-271.431,-22.2903,-271.13	1/2:74:0,28,46:0:0:28,46:995,1625:-213.735,-132.654,-124.225,-81.4352,0,-67.5878	1/2:166:0,88,77:0:0:88,77:3133,2717:-476.45,-221.192,-194.702,-255.252,0,-232.073	1/2:55:0,35,20:0:0:35,20:1256,702:-159.934,-57.4781,-46.942,-102.809,0,-96.7886	1/2:40:0,23,17:0:0:23,17:828,594:-116.235,-48.6687,-41.745,-67.9204,0,-62.8029	1/2:73:0,33,39:0:0:33,39:1167,1377:-206.68,-112.187,-102.253,-94.5429,0,-82.8027	1/2:134:0,62,72:0:0:62,72:2208,2489:-382.52,-202.553,-183.889,-180.318,0,-158.644	1/2:87:0,41,46:0:0:41,46:1468,1637:-253.487,-133.77,-121.428,-120.074,0,-106.226	1/2:119:0,50,69:0:0:50,69:1796,2417:-343.527,-197.014,-181.962,-146.868,0,-126.097	1/2:56:0,36,20:0:0:36,20:1296,699:-162.906,-57.1977,-46.3606,-106.061,0,-100.041	1/2:74:0,35,39:0:0:35,39:1243,1362:-212.42,-111.135,-100.599,-101.638,0,-89.8976	1/2:78:0,40,37:0:0:40,37:1404,1291:-219.241,-104.98,-92.9391,-114.251,0,-103.113	1/2:69:0,40,29:0:0:40,29:1419,1015:-198.541,-82.9306,-70.8894,-115.962,0,-107.232	1/2:72:0,36,36:0:0:36,36:1296,1270:-209.477,-103.728,-92.8905,-106.106,0,-95.269	1/2:56:0,27,29:0:0:27,29:943,1013:-159.443,-82.7498,-74.622,-77.0421,0,-68.3122	1/1:48:0,48,0:0:0:48,0:1728,0:-155.794,-14.4494,0,-155.794,-14.4494,-155.794	1/1:74:0,74,0:0:0:74,0:2632,0:-237.124,-22.2762,0,-237.124,-22.2762,-237.124	1/1:27:0,27,0:0:0:27,0:948,0:-85.6301,-8.12781,0,-85.6301,-8.12781,-85.6301	1/1:85:0,85,0:0:0:85,0:3037,0:-273.559,-25.5876,0,-273.559,-25.5876,-273.559	1/1:114:0,114,0:0:0:114,0:4075,0:-366.891,-34.3174,0,-366.891,-34.3174,-366.891	1/1:88:0,87,0:0:0:87,0:3112,0:-279.941,-26.1896,0,-279.941,-26.1896,-279.941	1/2:32:0,14,18:0:0:14,18:504,634:-93.0815,-51.9542,-47.7398,-41.4837,0,-36.0651	1/1:49:0,49,0:0:0:49,0:1747,0:-157.513,-14.7505,0,-157.513,-14.7505,-157.513	1/1:67:0,67,0:0:0:67,0:2387,0:-215.087,-20.169,0,-215.087,-20.169,-215.087	1/1:294:0,292,0:0:0:292,0:10458,0:-940.816,-87.9008,0,-940.816,-87.9008,-940.816	1/1:140:0,140,0:0:0:140,0:5001,0:-450.04,-42.1442,0,-450.04,-42.1442,-450.04	1/1:42:0,42,0:0:0:42,0:1462,0:-131.84,-12.6433,0,-131.84,-12.6433,-131.84	1/1:202:0,201,0:0:0:201,0:7175,0:-645.553,-60.507,0,-645.553,-60.507,-645.553	1/2:125:0,61,62:0:0:61,62:2172,2195:-355.846,-178.817,-160.454,-177.068,0,-158.404	1/2:91:0,54,37:0:0:54,37:1936,1286:-262.807,-104.899,-88.6429,-158.26,0,-147.122	1/2:14:0,7,7:0:0:7,7:248,252:-41.1218,-20.9217,-18.8145,-20.557,0,-18.4498	1/2:11:0,9,2:0:0:9,2:320,72:-32.3087,-6.23466,-3.52539,-26.4331,0,-25.831	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:5:0,5,0:0:0:5,0:180,0:-16.5511,-1.50515,0,-16.5511,-1.50515,-16.5511	2/2:5:0,0,5:0:0:0,5:0,174:-16.0018,-16.0018,-16.0018,-1.50515,-1.50515,0	1/2:211:0,106,105:0:0:106,105:3783,3735:-613.119,-304.717,-272.808,-308.758,0,-277.15	1/2:149:0,73,76:0:0:73,76:2595,2660:-428.119,-216.764,-194.789,-211.707,0,-188.829	1/2:62:0,38,24:0:0:38,24:1360,844:-179.959,-69.0524,-57.6132,-111.261,0,-104.036	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:117:0,116,0:0:0:116,0:4152,0:-373.608,-34.9195,0,-373.608,-34.9195,-373.608	1/2:25:0,8,17:0:0:8,17:284,582:-70.7037,-47.5593,-45.1511,-23.4951,0,-18.3776	1/2:96:0,40,55:0:0:40,55:1428,1927:-273.294,-156.873,-144.831,-116.503,0,-99.946	1/2:65:0,27,38:0:0:27,38:963,1357:-189.489,-110.988,-102.861,-78.8573,0,-67.4182	1/2:78:0,33,45:0:0:33,45:1180,1551:-222.515,-126.294,-116.36,-96.5732,0,-83.0269	1/1:53:0,53,0:0:0:53,0:1875,0:-169.025,-15.9546,0,-169.025,-15.9546,-169.025	1/2:115:0,52,63:0:0:52,63:1856,2238:-334.029,-182.719,-167.065,-151.666,0,-132.701	1/2:138:0,65,73:0:0:65,73:2318,2526:-394.516,-205.556,-185.989,-189.311,0,-167.336	1/2:97:0,37,59:0:0:37,59:1298,2026:-270.107,-164.474,-153.336,-105.621,0,-87.8604	1/1:106:0,105,1:0:0:105,1:3716,36:-334.267,-31.6082,0,-331.33,-28.3109,-331.029	1/2:83:0,39,44:0:0:39,44:1370,1532:-236.432,-124.925,-113.184,-111.857,0,-98.6115	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/2:72:0,37,35:0:0:37,35:1319,1216:-206.727,-99.2055,-88.0674,-107.873,0,-97.3366	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:16:0,6,10:0:0:6,10:216,344:-45.91,-28.2795,-26.4734,-17.9843,0,-14.974	1/2:79:0,44,35:0:0:44,35:1580,1215:-228.004,-99.112,-85.8667,-129.245,0,-118.709	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-9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chr02	26661085	.	G	A	39343.6	PASS	AB=0.497532;ABP=3.26755;AC=54;AF=0.287234;AN=188;AO=2425;CIGAR=1X;DP=9075;DPB=9075;DPRA=0.904905;EPP=5268.83;EPPR=14421.6;GTI=2;LEN=1;MEANALT=1.01818;MQM=59.5233;MQMR=59.939;NS=94;NUMALT=1;ODDS=2.34199;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85225;QR=237321;RO=6644;RPL=0;RPP=5268.83;RPPR=14430.3;RPR=2425;RUN=1;SAF=2425;SAP=5268.83;SAR=0;SRF=6643;SRP=14421.6;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:160:160,0:160:5729:0:0:0,-48.1648,-515.713	0/1:81:39,42:39:1381:42:1477:-108.791,0,-100.203	0/1:236:101,135:101:3593:135:4714:-353.371,0,-252.468	0/1:67:40,27:40:1432:27:926:-63.2874,0,-109.009	0/1:25:8,17:8:288:17:604:-47.1649,0,-18.7417	0/1:127:66,61:66:2372:61:2152:-155.713,0,-175.507	0/1:177:112,65:112:3940:65:2289:-152.668,0,-301.497	0/1:77:33,44:33:1169:44:1514:-113.25,0,-82.336	0/1:122:63,59:63:2260:59:2084:-151.101,0,-166.937	0/1:54:31,23:31:1108:23:812:-57.1429,0,-83.7754	0/1:52:21,31:21:756:31:1108:-84.2408,0,-52.7055	0/1:71:37,34:37:1320:34:1201:-87.0068,0,-97.7288	0/1:77:28,49:28:1008:49:1737:-133.415,0,-67.857	0/1:49:23,26:23:824:26:924:-68.7202,0,-59.7328	0/1:55:29,26:29:1036:26:932:-67.6422,0,-76.9973	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:168:168,0:168:5987:0:0:0,-50.573,-538.788	0/0:99:99,0:99:3525:0:0:0,-29.802,-317.402	0/0:129:129,0:129:4575:0:0:0,-38.8329,-411.914	0/1:43:22,21:22:788:21:744:-54.3358,0,-58.3005	0/0:86:86,0:86:3057:0:0:0,-25.8886,-274.422	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:331:331,0:331:11827:0:0:0,-99.6409,-1064.29	0/0:191:191,0:191:6815:0:0:0,-57.4967,-613.418	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:196:196,0:196:6982:0:0:0,-59.0019,-628.437	0/1:257:137,120:137:4864:120:4243:-304.637,0,-360.541	0/1:129:78,51:78:2780:51:1738:-117.234,0,-211.601	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:210:99,111:99:3537:111:3952:-292.635,0,-255.318	0/1:268:154,114:154:5468:114:4010:-279.598,0,-411.57	0/1:51:27,24:27:968:24:848:-61.0803,0,-72.0848	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:238:237,0:237:8496:0:0:0,-71.3441,-764.277	0/1:19:9,10:9:320:10:344:-25.5725,0,-23.4228	0/1:155:69,86:69:2472:86:3048:-227.695,0,-176.072	0/1:71:35,36:35:1252:36:1265:-92.7745,0,-91.6119	0/1:50:30,20:30:1080:20:712:-49.2687,0,-82.4594	0/0:74:74,0:74:2629:0:0:0,-22.2762,-236.856	0/1:74:32,42:32:1129:42:1500:-112.988,0,-79.6401	0/1:179:76,103:76:2716:103:3601:-270.413,0,-190.734	0/1:140:85,55:85:3029:55:1879:-127.226,0,-230.695	0/0:118:117,0:117:4181:0:0:0,-35.2205,-376.111	0/1:194:86,108:86:3064:108:3769:-280.999,0,-217.582	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:171:97,74:97:3492:74:2604:-183.024,0,-263.013	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:20:10,10:10:356:10:356:-26.3606,0,-26.3606	0/1:184:114,70:114:4047:70:2446:-164.978,0,-309.026	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:11:4,7:4:144:7:244:-18.9881,0,-10.0023	0/1:34:17,17:17:585:17:608:-44.8124,0,-42.7369	0/0:140:140,0:140:5032:0:0:0,-42.1442,-453.024	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:225:223,0:223:7982:0:0:0,-67.1297,-718.038	0/0:240:240,0:240:8620:0:0:0,-72.2472,-775.787	0/1:44:25,19:25:896:19:661:-46.5617,0,-67.715	0/0:104:104,0:104:3694:0:0:0,-31.3071,-332.661	0/0:226:219,6:219:7849:6:216:0,-48.3034,-686.617	0/1:97:28,69:28:1008:69:2414:-188.29,0,-61.8364	0/1:21:11,10:11:392:10:356:-26.0596,0,-29.2984	0/1:51:26,25:26:936:25:869:-63.1713,0,-69.2069	0/1:94:46,48:46:1652:48:1704:-125.338,0,-120.672	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4891	0/0:158:158,0:158:5668:0:0:0,-47.5627,-510.238	0/1:96:52,44:52:1852:44:1538:-109.784,0,-138.061	0/0:121:121,0:121:4287:0:0:0,-36.4246,-385.799	0/0:162:162,0:162:5820:0:0:0,-48.7669,-523.91	0/1:203:117,86:117:4177:86:3057:-214.216,0,-314.991	0/1:75:32,43:32:1148:43:1513:-113.875,0,-81.0526	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.647	0/0:63:62,0:62:2198:0:0:0,-18.6639,-197.721	0/1:197:78,119:78:2788:119:4128:-312.277,0,-191.857	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.132	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:92:42,50:42:1504:50:1759:-130.892,0,-107.96	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.271	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	0/1:69:38,31:38:1334:31:1085:-77.1614,0,-99.5848	0/1:61:29,32:29:1029:32:1136:-84.1697,0,-74.5583	0/1:26:14,12:14:496:12:413:-29.5404,0,-37.1475	0/1:80:41,39:41:1476:39:1347:-97.4304,0,-109.054	0/1:58:13,45:13:468:45:1608:-127.464,0,-24.9999	0/0:98:98,0:98:3511:0:0:0,-29.5009,-316.199	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001
chr02	26661242	.	A	C	35203.4	PASS	AB=0.5073;ABP=4.88085;AC=54;AF=0.287234;AN=188;AO=2060;CIGAR=1X;DP=7448;DPB=7448;DPRA=1.07911;EPP=4372.62;EPPR=11424.4;GTI=1;LEN=1;MEANALT=1;MQM=59.9898;MQMR=59.9916;NS=94;NUMALT=1;ODDS=0.883639;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73573;QR=192788;RO=5387;RPL=2048;RPP=4372.62;RPPR=11424.4;RPR=12;RUN=1;SAF=0;SAP=4476.24;SAR=2060;SRF=0;SRP=11700.7;SRR=5387;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.977	0/1:141:82,59:82:2948:59:2116:-148.264,0,-223.108	0/1:132:55,77:55:1980:77:2730:-206.207,0,-138.738	0/1:53:29,24:29:1040:24:852:-61.0458,0,-77.9598	0/1:47:30,17:30:1080:17:612:-41.265,0,-83.3648	0/1:77:48,29:48:1693:29:1040:-70.7351,0,-129.475	0/1:88:46,42:46:1638:42:1500:-108.804,0,-121.217	0/1:80:42,38:42:1504:38:1364:-98.9783,0,-111.572	0/1:80:48,32:48:1728:32:1148:-79.5474,0,-131.723	0/1:26:10,16:10:351:16:572:-43.9866,0,-24.0999	0/1:67:28,39:28:1008:39:1373:-103.698,0,-70.8673	0/1:60:35,25:35:1260:25:896:-62.8986,0,-95.6437	0/1:35:14,21:14:500:21:746:-56.9285,0,-34.8001	0/1:64:33,31:33:1188:31:1112:-81.1254,0,-87.9627	0/1:36:9,27:9:324:27:964:-76.2397,0,-18.6688	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:409:405,4:405:14471:4:144:0,-109.808,-1288.82	0/0:115:113,2:113:4048:2:72:0,-27.7817,-357.671	0/0:105:105,0:105:3751:0:0:0,-31.6081,-337.79	0/1:64:19,45:19:665:45:1612:-126.104,0,-40.9069	0/0:39:38,1:38:1364:1:36:0,-8.14189,-119.462	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:246:246,0:246:8831:0:0:0,-74.0534,-794.772	0/0:210:210,0:210:7527:0:0:0,-63.2163,-677.469	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:165:77,88:77:2760:88:3164:-235.314,0,-198.972	0/1:124:67,57:67:2386:57:2048:-147.264,0,-177.669	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:22:12,10:12:428:10:360:-26.1216,0,-32.2361	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:24:8,16:8:288:16:568:-44.2271,0,-19.0427	0/1:169:78,91:78:2783:91:3256:-242.387,0,-199.837	0/1:148:85,63:85:3020:63:2251:-158.301,0,-227.477	0/1:45:20,25:20:720:25:881:-66.0595,0,-51.5824	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/1:31:16,15:16:572:15:536:-39.2429,0,-42.4815	0/1:147:64,83:64:2296:83:2963:-222.65,0,-162.65	0/1:47:24,23:24:864:23:824:-60.3349,0,-63.9342	0/1:38:25,13:25:896:13:464:-30.6584,0,-69.5212	0/0:117:117,0:117:4173:0:0:0,-35.2205,-375.752	0/1:145:63,82:63:2237:82:2905:-218.036,0,-157.943	0/1:142:60,82:60:2147:82:2936:-221.728,0,-150.751	0/1:105:58,47:58:2076:47:1672:-119.158,0,-155.502	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:91:63,28:63:2246:28:959:-59.2215,0,-175.008	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:138:74,64:74:2644:64:2279:-163.828,0,-196.665	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:16:3,13:3:108:13:468:-37.6432,0,-5.25869	0/1:171:86,85:86:3068:85:3048:-223.073,0,-224.871	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:90:51,39:51:1827:39:1396:-98.8464,0,-137.618	0/0:94:93,1:93:3336:1:36:0,-24.6985,-296.859	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:140:140,0:140:4997:0:0:0,-42.1442,-449.877	0/0:150:150,0:150:5380:0:0:0,-45.1545,-484.33	0/1:42:18,24:18:644:24:856:-64.7178,0,-45.6473	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:108:106,2:106:3812:2:72:0,-25.6745,-336.439	0/1:150:44,106:44:1572:106:3781:-295.331,0,-96.6171	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:30:22,8:22:783:8:273:-15.8693,0,-61.762	0/1:44:19,25:19:676:25:896:-67.715,0,-47.9227	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:158:158,0:158:5645:0:0:0,-47.5627,-508.17	0/1:67:30,37:30:1063:37:1323:-99.2023,0,-74.27	0/0:108:108,0:108:3835:0:0:0,-32.5112,-345.346	0/0:115:115,0:115:4114:0:0:0,-34.6184,-370.444	0/1:130:79,51:79:2828:51:1832:-126.027,0,-215.625	0/1:70:25,45:25:891:45:1612:-124.298,0,-59.4367	0/1:18:5,13:5:180:13:468:-37.0411,0,-11.1335	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:182:107,75:107:3848:75:2677:-186.386,0,-291.727	0/0:57:56,0:56:2016:0:0:0,-16.8577,-181.353	0/0:49:49,0:49:1727:0:0:0,-14.7505,-155.711	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2693	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:48:24,24:24:860:24:864:-63.6331,0,-63.2724	0/1:58:28,30:28:1008:30:1076:-79.6931,0,-73.5766	0/1:31:14,17:14:500:17:604:-45.3587,0,-36.0042	0/1:89:41,48:41:1444:48:1716:-127.934,0,-103.461	0/1:77:25,52:25:900:52:1864:-144.86,0,-58.1417	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.334	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.999
chr02	26728269	.	A	G	107269	PASS	AB=0.497769;ABP=3.16532;AC=133;AF=0.722826;AN=184;AO=5179;CIGAR=1X;DP=6988;DPB=6988;DPRA=0;EPP=10912.9;EPPR=3861.95;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.9917;MQMR=60;NS=92;NUMALT=1;ODDS=2.39028;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181733;QR=64330;RO=1805;RPL=5178;RPP=11240.4;RPPR=3922.52;RPR=1;RUN=1;SAF=5141;SAP=10921.4;SAR=38;SRF=1798;SRP=3861.95;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1519:-136.998,-13.2453,0	1/1:51:0,51:0:0:51:1795:-161.829,-15.3525,0	0/1:147:66,81:66:2348:81:2847:-212.217,0,-167.326	0/1:138:67,71:67:2382:71:2467:-180.742,0,-173.095	0/1:65:28,37:28:989:37:1280:-95.93,0,-69.7551	0/1:12:2,10:2:72:10:352:-28.4058,0,-3.22436	0/1:41:22,19:22:775:19:676:-48.8258,0,-57.729	0/1:105:59,46:59:2103:46:1602:-112.857,0,-157.931	0/1:67:32,35:32:1140:35:1244:-92.0957,0,-82.7402	0/1:70:27,43:27:968:43:1522:-116.2,0,-66.3653	0/1:49:19,30:19:680:30:1064:-81.3212,0,-46.7787	0/1:76:43,33:43:1536:33:1164:-82.1887,0,-115.655	0/1:65:34,31:34:1220:31:1090:-78.841,0,-90.5399	0/1:34:15,19:15:519:19:659:-49.3973,0,-36.8017	0/1:78:36,42:36:1262:42:1470:-109.113,0,-90.4006	0/1:58:32,26:32:1144:26:924:-66.0179,0,-85.8098	1/1:21:0,21:0:0:21:732:-66.2003,-6.32163,0	1/1:34:0,34:0:0:34:1203:-108.575,-10.235,0	1/1:36:0,36:0:0:36:1263:-113.972,-10.8371,0	1/1:107:0,107:0:0:107:3780:-340.401,-32.2102,0	1/1:162:0,162:0:0:162:5676:-510.965,-48.7669,0	1/1:75:0,75:0:0:75:2648:-238.567,-22.5773,0	0/1:75:34,41:34:1208:41:1430:-106.414,0,-86.4488	1/1:50:0,50:0:0:50:1762:-158.862,-15.0515,0	1/1:51:0,51:0:0:51:1755:-158.23,-15.3525,0	1/1:165:0,165:0:0:165:5778:-520.143,-49.67,0	1/1:208:0,208:0:0:208:7338:-660.48,-62.6142,0	1/1:46:0,46:0:0:46:1593:-143.655,-13.8474,0	1/1:242:1,241:1:32:241:8496:-761.447,-69.6499,0	0/1:77:32,45:32:1152:45:1562:-117.687,0,-80.8108	0/1:81:31,49:31:1112:49:1721:-130.868,0,-76.0846	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:9:4,5:4:140:5:176:-13.4757,0,-10.2353	0/1:208:119,89:119:4264:89:3095:-216.166,0,-321.324	0/1:83:28,55:28:995:55:1916:-147.73,0,-64.8785	0/1:78:40,38:40:1436:38:1304:-94.1731,0,-106.057	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:85:0,85:0:0:85:2988:-269.153,-25.5876,0	0/1:35:22,13:22:784:13:464:-31.5615,0,-60.3479	0/1:76:35,41:35:1252:41:1444:-107.376,0,-90.1068	0/1:48:26,22:26:932:22:776:-55.7127,0,-69.7494	0/1:47:19,28:19:680:28:962:-72.7397,0,-47.3808	1/1:67:0,66:0:0:66:2273:-204.618,-19.868,0	0/1:87:40,47:40:1428:47:1635:-121.245,0,-102.628	0/1:144:76,68:76:2708:68:2411:-173.894,0,-200.616	0/1:77:44,33:44:1568:33:1166:-82.0663,0,-118.232	1/1:117:1,116:1:36:116:4119:-367.294,-31.6222,0	0/1:33:11,22:11:396:22:777:-60.3177,0,-26.0488	.:.:.:.:.:.:.:.	0/1:331:156,175:156:5568:175:6135:-452.62,0,-401.605	1/1:39:0,39:0:0:39:1373:-123.867,-11.7402,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	1/1:152:0,152:0:0:152:5366:-483.077,-45.7566,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:65:32,33:32:1132:33:1154:-84.5978,0,-82.6216	1/1:97:0,97:0:0:97:3411:-307.207,-29.1999,0	.:.:.:.:.:.:.:.	1/1:180:0,180:0:0:180:6297:-566.835,-54.1854,0	1/1:142:0,142:0:0:142:5019:-451.858,-42.7463,0	0/1:44:25,19:25:882:19:659:-46.387,0,-66.4512	1/1:52:0,52:0:0:52:1832:-165.158,-15.6536,0	1/1:78:0,78:0:0:78:2757:-248.372,-23.4803,0	0/1:120:88,32:88:3144:32:1135:-66.3339,0,-247.062	0/1:36:19,17:19:676:17:595:-43.0396,0,-50.3309	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:27:14,13:14:504:13:460:-33.6076,0,-37.5703	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:89:0,89:0:0:89:3113:-280.398,-26.7917,0	0/1:82:33,49:33:1176:49:1703:-128.868,0,-81.4633	1/1:64:0,64:0:0:64:2239:-201.773,-19.2659,0	1/1:224:1,223:1:36:223:7858:-703.658,-63.8324,0	0/1:48:16,31:16:572:31:1088:-83.7213,0,-37.3053	0/1:99:50,49:50:1778:49:1699:-123.39,0,-130.499	0/1:18:9,9:9:320:9:320:-23.7238,0,-23.7238	1/1:142:3,139:3:104:139:4880:-429.658,-33.0435,0	1/1:79:0,79:0:0:79:2794:-251.7,-23.7814,0	0/1:146:81,65:81:2900:65:2306:-163.84,0,-217.285	1/1:73:0,73:0:0:73:2570:-231.551,-21.9752,0	1/1:46:0,46:0:0:46:1606:-144.828,-13.8474,0	0/1:33:16,17:16:563:17:577:-42.3148,0,-41.0652	1/1:119:0,119:0:0:119:4140:-372.792,-35.8226,0	0/1:26:13,13:13:452:13:459:-33.8173,0,-33.1843	0/1:77:43,34:43:1544:34:1164:-81.8823,0,-116.074	0/1:67:37,30:37:1305:30:1038:-73.5586,0,-97.5804	0/1:19:8,11:8:271:11:384:-29.1751,0,-18.9999	0/1:86:53,33:53:1887:33:1145:-77.4648,0,-144.219	0/1:67:43,24:43:1535:24:847:-56.3797,0,-118.273	1/1:116:0,116:0:0:116:4077:-367.122,-34.9195,0	1/1:93:0,92:0:0:92:3191:-287.148,-27.6948,0
chr02	26728326	.	GTCC	ATCA,ATCC	157564	PASS	AB=0.500867,0.495663;ABP=3.03667,3.66954;AC=132,52;AF=0.717391,0.282609;AN=184;AO=5837,2010;CIGAR=1X2M1X,1X3M;DP=7876;DPB=7876;DPRA=0,0.953295;EPP=12677.9,4341.65;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.92391,2.31034;MQM=40.0562,53.3597;MQMR=0;NS=92;NUMALT=2;ODDS=1.29434;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=205911,71620;QR=0;RO=0;RPL=5837,2007;RPP=12677.9,4341.65;RPPR=0;RPR=0,3;RUN=1,1;SAF=0,0;SAP=12677.9,4367.67;SAR=5837,2010;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26,0:0:0:26,0:923,0:-76.9969,-7.82678,0,-76.9969,-7.82678,-76.9969	1/1:130:0,130,0:0:0:130,0:4574,0:-383.446,-39.1339,0,-383.446,-39.1339,-383.446	1/2:67:0,34,33:0:0:34,33:1174,1172:-182.372,-95.49,-85.255,-87.2182,0,-77.2842	1/2:196:0,108,87:0:0:108,87:3805,3082:-546.23,-249.604,-217.092,-296.681,0,-270.492	1/2:38:0,22,16:0:0:22,16:781,546:-105.498,-44.5539,-37.9312,-61.285,0,-56.4686	1/2:30:0,15,14:0:0:15,14:515,504:-79.6064,-41.0889,-36.5735,-38.6176,0,-34.4031	1/2:65:0,33,32:0:0:33,32:1180,1144:-185.912,-93.4541,-83.5201,-92.8091,0,-83.1762	1/2:123:0,73,49:0:0:73,49:2561,1723:-331.254,-138.829,-116.854,-192.47,0,-177.719	1/2:57:0,41,15:0:0:41,15:1455,540:-153.486,-43.9863,-31.644,-109.566,0,-105.051	1/2:102:0,58,44:0:0:58,44:2065,1580:-290.883,-128.968,-111.508,-162.268,0,-149.022	1/2:59:0,33,26:0:0:33,26:1175,917:-167.8,-74.8318,-64.8978,-93.318,0,-85.4913	1/2:77:0,35,42:0:0:35,42:1244,1497:-215.241,-121.916,-111.38,-93.6662,0,-81.023	1/2:56:0,33,23:0:0:33,23:1159,826:-154.3,-67.0154,-57.0814,-87.6283,0,-80.7046	1/2:87:0,46,41:0:0:46,41:1617,1468:-244.075,-119.872,-106.024,-124.549,0,-112.207	1/2:36:0,18,18:0:0:18,18:638,648:-101.3,-52.9628,-47.5443,-48.6826,0,-43.2641	1/2:44:0,19,25:0:0:19,25:680,900:-126.39,-73.5546,-67.835,-53.1851,0,-45.6593	1/1:70:0,69,0:0:0:69,0:2421,0:-205.102,-20.7711,0,-205.102,-20.7711,-205.102	1/1:57:0,57,0:0:0:57,0:2024,0:-168.137,-17.1587,0,-168.137,-17.1587,-168.137	1/1:46:0,45,0:0:0:45,0:1595,0:-133.422,-13.5464,0,-133.422,-13.5464,-133.422	1/1:98:0,98,0:0:0:98,0:3457,0:-299.671,-29.5009,0,-299.671,-29.5009,-299.671	1/1:150:0,150,0:0:0:150,0:5283,0:-451.35,-45.1545,0,-451.35,-45.1545,-451.35	1/1:54:0,53,0:0:0:53,0:1868,0:-160.377,-15.9546,0,-160.377,-15.9546,-160.377	1/2:96:0,49,47:0:0:49,47:1697,1648:-267.79,-133.715,-118.964,-134.418,0,-120.27	1/1:124:0,122,1:0:0:122,1:4337,36:-371.002,-36.7257,0,-368.069,-33.75,-367.768	1/1:53:0,53,0:0:0:53,0:1893,0:-163.998,-15.9546,0,-163.998,-15.9546,-163.998	1/1:307:0,306,0:0:0:306,0:10690,0:-938.61,-92.1152,0,-938.61,-92.1152,-938.61	1/1:157:0,156,0:0:0:156,0:5496,0:-467.516,-46.9607,0,-467.516,-46.9607,-467.516	1/1:39:0,39,0:0:0:39,0:1395,0:-119.103,-11.7402,0,-119.103,-11.7402,-119.103	1/1:162:0,161,0:0:0:161,0:5677,0:-493.854,-48.4658,0,-493.854,-48.4658,-493.854	1/2:138:0,80,58:0:0:80,58:2838,2038:-384.501,-165.716,-141.633,-219.13,0,-201.67	1/2:93:0,47,45:0:0:47,45:1660,1616:-261.876,-131.529,-117.38,-130.347,0,-116.8	1/2:4:0,2,2:0:0:2,2:71,72:-11.152,-6.22122,-5.61916,-5.26476,0,-4.6627	1/2:4:0,3,1:0:0:3,1:99,32:-10.6414,-2.89624,-1.99315,-8.06499,0,-7.76396	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:30,0:-2.93617,-0.30103,0,-2.93617,-0.30103,-2.93617	1/2:4:0,2,2:0:0:2,2:72,68:-10.5699,-5.84122,-5.23916,-5.04693,0,-4.44487	1/2:238:0,118,119:0:0:118,119:4168,4258:-674.279,-346.347,-310.825,-327.983,0,-292.16	1/2:194:0,79,115:0:0:79,115:2774,4087:-544.997,-332.004,-308.222,-213.335,0,-178.716	1/2:62:0,27,33:0:0:27,33:964,1184:-168.52,-96.2257,-88.0979,-72.2797,0,-62.3457	1/1:4:0,4,0:0:0:4,0:138,0:-12.3022,-1.20412,0,-12.3022,-1.20412,-12.3022	1/1:98:0,98,0:0:0:98,0:3466,0:-295.251,-29.5009,0,-295.251,-29.5009,-295.251	1/2:38:0,19,19:0:0:19,19:677,680:-108.275,-55.5991,-49.8795,-53.025,0,-47.3054	1/2:67:0,30,37:0:0:30,37:1047,1312:-187.007,-106.645,-97.6145,-80.7023,0,-69.5641	1/2:92:0,39,53:0:0:39,53:1351,1908:-258.491,-155.518,-143.778,-103.313,0,-87.3589	1/2:63:0,37,26:0:0:37,26:1304,914:-175.263,-74.3756,-63.2375,-101.231,0,-93.4044	1/1:93:0,93,0:0:0:93,0:3239,0:-285.134,-27.9958,0,-285.134,-27.9958,-285.134	1/2:79:0,25,54:0:0:25,54:891,1918:-221.477,-155.727,-148.201,-66.0838,0,-49.8282	1/2:137:0,60,77:0:0:60,77:2118,2751:-386.539,-223.868,-205.806,-163.015,0,-139.836	1/2:103:0,60,43:0:0:60,43:2085,1534:-287.85,-124.997,-106.936,-163.199,0,-150.255	1/1:191:0,191,0:0:0:191,0:6713,0:-581.499,-57.4967,0,-581.499,-57.4967,-581.499	1/2:162:0,75,86:0:0:75,86:2652,3069:-460.805,-249.643,-227.065,-211.325,0,-185.436	1/2:11:0,1,10:0:0:1,10:36,356:-32.1974,-29.3465,-29.0454,-3.20167,0,-0.191369	1/2:112:0,62,50:0:0:62,50:2191,1800:-312.129,-146.498,-127.834,-165.976,0,-150.925	1/1:13:0,13,0:0:0:13,0:458,0:-40.7602,-3.91339,0,-40.7602,-3.91339,-40.7602	1/2:11:0,5,6:0:0:5,6:180,216:-31.5783,-17.9289,-16.4238,-13.9963,0,-12.1901	1/1:96:0,96,0:0:0:96,0:3398,0:-290.657,-28.8989,0,-290.657,-28.8989,-290.657	1/1:42:0,41,1:0:0:41,1:1448,21:-126.005,-12.3422,0,-124.419,-10.5435,-124.118	.:.:.:.:.:.:.:.	1/2:14:0,9,5:0:0:9,5:317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chr02	26800803	.	A	G	34357.3	PASS	AB=0.46642;ABP=48.0732;AC=53;AF=0.281915;AN=188;AO=2153;CIGAR=1X;DP=9408;DPB=9408;DPRA=0.771976;EPP=4678.19;EPPR=15752.7;GTI=2;LEN=1;MEANALT=1.01724;MQM=59.9972;MQMR=59.9953;NS=94;NUMALT=1;ODDS=0.798138;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76344;QR=258938;RO=7253;RPL=0;RPP=4678.19;RPPR=15752.7;RPR=2153;RUN=1;SAF=0;SAP=4678.19;SAR=2153;SRF=0;SRP=15752.7;SRR=7253;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1810:0:0:0,-15.3525,-163.18	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/1:171:92,79:92:3268:79:2808:-201.482,0,-242.864	0/1:191:93,98:93:3324:98:3492:-256.993,0,-241.882	0/1:66:43,23:43:1544:23:815:-53.8028,0,-119.385	0/1:40:29,11:29:1027:11:396:-23.9415,0,-80.701	0/1:142:84,58:84:2977:58:2052:-142.203,0,-225.414	0/1:132:61,71:61:2180:71:2517:-187.045,0,-156.73	0/1:162:83,79:83:2950:79:2793:-202.843,0,-216.967	0/1:48:18,30:18:644:30:1057:-80.9895,0,-43.8412	0/1:53:25,28:25:892:28:1000:-74.3608,0,-64.6451	0/1:101:61,40:61:2180:40:1396:-95.5309,0,-166.062	0/1:58:33,25:33:1160:25:876:-61.6973,0,-87.2442	0/1:80:41,39:41:1463:39:1364:-98.9736,0,-107.883	0/1:54:27,27:27:972:27:950:-69.5578,0,-71.5423	0/1:68:29,39:29:1031:39:1378:-103.847,0,-72.6326	0/0:33:33,0:33:1179:0:0:0,-9.93399,-106.417	0/0:35:35,0:35:1229:0:0:0,-10.536,-110.912	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/0:127:127,0:127:4564:0:0:0,-38.2308,-410.924	0/0:221:221,0:221:7920:0:0:0,-66.5276,-712.815	0/0:132:132,0:132:4703:0:0:0,-39.736,-423.432	0/1:130:78,52:78:2782:52:1830:-125.844,0,-211.486	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:146:146,0:146:5224:0:0:0,-43.9504,-470.296	0/0:347:347,0:347:12367:0:0:0,-104.457,-1112.87	0/0:281:281,0:281:10046:0:0:0,-84.5894,-904.076	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:386:386,0:386:13817:0:0:0,-116.198,-1243.3	0/1:102:53,49:53:1896:49:1742:-126.358,0,-140.213	0/1:96:50,46:50:1792:46:1648:-119.71,0,-132.664	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:19:9,10:9:324:10:351:-26.2071,0,-23.7863	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:204:102,102:102:3630:102:3581:-261.088,0,-265.496	0/1:161:101,60:101:3592:60:2120:-142.601,0,-275.02	0/1:39:22,17:22:788:17:604:-42.9504,0,-59.5046	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:132:132,0:132:4707:0:0:0,-39.736,-423.791	0/1:36:15,21:15:540:21:748:-56.8082,0,-38.0995	0/1:175:96,79:96:3444:79:2812:-200.638,0,-257.492	0/1:73:45,28:45:1587:28:991:-67.5283,0,-121.144	0/1:55:27,28:27:946:28:987:-72.5864,0,-68.8962	0/0:136:135,0:135:4794:0:0:0,-40.639,-431.415	0/1:79:41,38:41:1460:38:1332:-96.3948,0,-107.915	0/1:175:80,95:80:2838:95:3395:-253.085,0,-202.978	0/1:130:67,63:67:2377:63:2236:-162.368,0,-175.053	0/0:116:116,0:116:4124:0:0:0,-34.9195,-371.345	0/1:79:50,29:50:1800:29:1029:-69.1398,0,-138.501	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:132:67,65:67:2412:65:2322:-169.503,0,-177.6	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:18:10,8:10:356:8:279:-20.029,0,-26.9627	0/0:151:151,0:151:5415:0:0:0,-45.4555,-487.478	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/1:23:14,9:14:495:9:307:-21.0365,0,-37.9593	0/1:111:62,49:62:2205:49:1744:-123.829,0,-165.299	0/0:123:122,1:122:4314:1:36:0,-33.4284,-384.84	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:206:206,0:206:7388:0:0:0,-62.0122,-664.965	0/0:196:196,0:196:7005:0:0:0,-59.0019,-630.513	0/1:72:38,34:38:1360:34:1224:-88.7929,0,-101.026	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:218:218,0:218:7803:0:0:0,-65.6245,-702.213	0/1:159:54,105:54:1935:105:3744:-289.296,0,-126.562	0/1:47:30,17:30:1068:17:612:-41.265,0,-82.2837	0/1:36:25,11:25:896:11:392:-24.783,0,-70.1233	0/1:42:23,19:23:824:19:684:-49.2471,0,-61.8401	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/0:190:190,0:190:6790:0:0:0,-57.1957,-611.17	0/1:111:59,52:59:2116:52:1855:-133.815,0,-157.294	0/0:255:255,0:255:9094:0:0:0,-76.7626,-818.436	0/0:166:166,0:166:5943:0:0:0,-49.971,-534.977	0/1:127:76,51:76:2716:51:1804:-124.408,0,-206.453	0/1:105:66,39:66:2368:39:1369:-91.8981,0,-181.77	0/1:31:21,10:21:756:10:356:-23.0493,0,-59.0353	0/0:112:110,2:110:3905:2:68:0,-27.2576,-345.184	0/0:103:103,0:103:3675:0:0:0,-31.0061,-330.954	0/1:196:110,86:110:3922:86:3071:-217.617,0,-294.171	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.684	0/0:72:72,0:72:2559:0:0:0,-21.6742,-230.558	0/1:48:30,18:30:1067:18:635:-43.0275,0,-81.8918	0/0:123:121,1:121:4327:1:36:0,-33.4872,-386.007	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:66:23,43:23:828:43:1531:-118.214,0,-54.9761	0/1:62:31,31:31:1116:31:1077:-78.571,0,-82.0878	0/1:60:28,32:28:981:32:1118:-82.8642,0,-70.5392	0/1:122:75,47:75:2679:47:1684:-115.121,0,-204.629	0/1:59:24,35:24:860:35:1240:-94.1426,0,-59.9611	0/0:168:167,1:167:5983:1:36:0,-46.9748,-534.977	0/0:88:86,2:86:3075:2:64:0,-20.4125,-270.9
chr02	26800830	.	CCTG	CCTA	157904	PASS	AB=0.529512;ABP=38.6409;AC=135;AF=0.718085;AN=188;AO=7368;CIGAR=3M1X;DP=9606;DPB=9606;DPRA=0;EPP=15596.8;EPPR=4603.93;GTI=2;LEN=1;MEANALT=1.30851;MQM=59.9923;MQMR=59.9973;NS=94;NUMALT=1;ODDS=1.52076;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263511;QR=77657;RO=2202;RPL=7321;RPP=15596.8;RPPR=4603.93;RPR=47;RUN=1;SAF=0;SAP=16002.4;SAR=7368;SRF=0;SRP=4784.59;SRR=2202;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54:0:0:54:1917:-172.805,-16.2556,0	1/1:68:0,68:0:0:68:2435:-219.405,-20.47,0	0/1:174:79,95:79:2780:95:3395:-253.385,0,-198.061	0/1:195:100,95:100:3502:95:3400:-247.514,0,-256.694	0/1:67:23,44:23:820:44:1576:-121.963,0,-53.9541	0/1:40:11,29:11:392:29:1035:-81.4219,0,-23.5791	0/1:144:59,85:59:2069:85:3040:-230.48,0,-143.132	0/1:138:76,62:76:2658:62:2224:-158.882,0,-197.924	0/1:169:82,87:82:2897:87:3095:-227.904,0,-210.093	0/1:50:31,18:31:1067:18:644:-43.2273,0,-81.2734	0/1:54:29,25:29:1033:25:900:-65.0654,0,-77.0279	0/1:102:40,62:40:1390:62:2220:-169.359,0,-94.6904	0/1:58:23,34:23:809:34:1224:-92.9481,0,-55.6111	0/1:82:40,42:40:1416:42:1504:-110.97,0,-103.051	0/1:54:27,27:27:956:27:972:-71.5423,0,-70.0993	0/1:70:41,29:41:1450:29:1044:-73.2027,0,-109.723	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	1/1:36:0,36:0:0:36:1272:-114.78,-10.8371,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:131:0,129:0:0:129:4619:-415.513,-38.8329,0	1/1:230:0,229:0:0:229:8220:-739.535,-68.9359,0	1/1:131:0,130:0:0:130:4656:-418.951,-39.1339,0	0/1:133:53,79:53:1873:79:2840:-215.821,0,-128.83	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:146:0,146:0:0:146:5202:-468.318,-43.9504,0	1/1:357:0,354:0:0:354:12649:-1137.94,-106.565,0	1/1:291:0,291:0:0:291:10387:-934.751,-87.5997,0	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	1/1:394:0,393:0:0:393:14070:-1265.76,-118.305,0	0/1:108:53,49:53:1873:49:1760:-127.632,0,-137.798	0/1:99:48,50:48:1681:50:1792:-131.858,0,-121.87	0/1:15:4,11:4:143:11:396:-31.4673,0,-8.70599	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:17:7,10:7:251:10:360:-27.6268,0,-17.8203	0/1:209:105,102:105:3707:102:3668:-267.649,0,-271.16	0/1:169:63,106:63:2192:106:3775:-289.074,0,-146.67	0/1:39:17,22:17:592:22:788:-59.5046,0,-41.8646	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:133:0,133:0:0:133:4736:-426.4,-40.037,0	0/1:37:22,15:22:772:15:540:-37.7984,0,-58.6626	0/1:179:81,98:81:2879:98:3511:-262.315,0,-205.464	0/1:73:28,45:28:995:45:1595:-121.864,0,-67.8895	0/1:56:29,27:29:1034:27:959:-69.7677,0,-76.5161	1/1:137:0,136:0:0:136:4876:-438.752,-40.9401,0	0/1:84:41,43:41:1448:43:1526:-112.345,0,-105.329	0/1:179:96,83:96:3369:83:2946:-211.49,0,-249.545	0/1:134:66,68:66:2340:68:2422:-177.897,0,-170.521	1/1:116:0,116:0:0:116:4168:-375.301,-34.9195,0	0/1:81:29,52:29:1033:52:1836:-141.135,0,-68.9001	0/1:7:3,4:3:101:4:144:-11.2064,0,-7.31616	0/1:135:67,68:67:2381:68:2432:-178.497,0,-173.908	1/1:75:0,75:0:0:75:2679:-241.355,-22.5773,0	0/1:19:8,11:8:288:11:387:-29.447,0,-20.5478	1/1:155:0,155:0:0:155:5537:-498.454,-46.6597,0	1/1:66:0,66:0:0:66:2356:-212.298,-19.868,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:23:9,14:9:311:14:504:-38.7744,0,-21.3995	0/1:111:49,62:49:1747:62:2223:-166.919,0,-124.1	1/1:123:0,123:0:0:123:4381:-394.463,-37.0267,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:206:0,205:0:0:205:7343:-660.645,-61.7112,0	1/1:199:0,199:0:0:199:7090:-638.159,-59.905,0	0/1:72:34,38:34:1215:38:1360:-101.026,0,-87.9823	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:224:0,223:0:0:223:7942:-714.36,-67.1297,0	0/1:166:109,57:109:3833:57:2036:-133.541,0,-295.199	0/1:49:18,31:18:647:31:1116:-86.0012,0,-43.8112	0/1:36:11,24:11:387:24:845:-65.4724,0,-24.2714	0/1:40:19,21:19:675:21:748:-55.6041,0,-49.0365	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:196:1,193:1:30:193:6919:-619.775,-55.7002,0	0/1:111:53,56:53:1882:56:2000:-147.16,0,-136.544	1/1:258:0,258:0:0:258:9238:-831.388,-77.6657,0	1/1:171:0,171:0:0:171:6117:-550.629,-51.4761,0	0/1:131:52,78:52:1833:78:2792:-212.026,0,-125.756	0/1:110:41,69:41:1451:69:2476:-189.98,0,-97.7725	0/1:31:10,21:10:357:21:756:-59.0353,0,-23.1403	1/1:111:2,109:2:72:109:3916:-345.795,-26.5776,0	1/1:107:0,106:0:0:106:3802:-342.017,-31.9092,0	0/1:201:86,115:86:3022:115:4119:-310.387,0,-211.704	1/1:55:0,55:0:0:55:1963:-176.944,-16.5567,0	1/1:73:0,72:0:0:72:2588:-232.806,-21.6742,0	0/1:49:19,30:19:666:30:1080:-82.7628,0,-45.514	1/1:124:1,122:1:36:122:4380:-390.774,-33.7882,0	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/1:66:43,23:43:1512:23:824:-54.6153,0,-116.503	0/1:63:31,31:31:1081:31:1101:-80.3757,0,-78.5733	0/1:61:32,29:32:1129:29:1036:-75.1911,0,-83.5546	0/1:124:48,74:48:1689:74:2652:-201.846,0,-115.214	0/1:60:34,25:34:1207:25:896:-62.8398,0,-90.8156	1/1:171:1,170:1:36:170:6066:-542.443,-47.8779,0	1/1:88:1,87:1:36:87:3119:-277.337,-22.8924,0
chr02	26819376	.	G	C	163992	PASS	AB=0.501409;ABP=3.1082;AC=134;AF=0.72043;AN=186;AO=8064;CIGAR=1X;DP=10905;DPB=10905;DPRA=0;EPP=17513.8;EPPR=6161.31;GTI=0;LEN=1;MEANALT=1.05376;MQM=44.4655;MQMR=57.1936;NS=93;NUMALT=1;ODDS=2.63938;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288794;QR=101379;RO=2836;RPL=0;RPP=17513.8;RPPR=6161.31;RPR=8064;RUN=1;SAF=8064;SAP=17513.8;SAR=0;SRF=2836;SRP=6161.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:860:-72.8335,-7.22472,0	1/1:150:0,150:0:0:150:5380:-469.914,-45.1545,0	0/1:141:55,86:55:1976:86:3096:-226.029,0,-135.311	0/1:206:83,123:83:2969:123:4399:-325.343,0,-204.715	0/1:76:46,30:46:1641:30:1072:-70.7835,0,-124.945	0/1:58:30,28:30:1065:28:1004:-70.3711,0,-78.5877	0/1:178:80,98:80:2846:98:3516:-256.295,0,-202.521	0/1:187:98,89:98:3509:89:3196:-223.376,0,-259.111	0/1:84:47,37:47:1680:37:1328:-91.393,0,-125.913	0/1:84:34,50:34:1209:50:1792:-133.054,0,-83.6593	0/1:103:48,55:48:1709:55:1976:-144.267,0,-122.94	0/1:78:37,41:37:1328:41:1464:-103.964,0,-95.985	0/1:75:29,46:29:1040:46:1648:-120.94,0,-71.1416	0/1:107:55,52:55:1972:52:1864:-131.957,0,-145.335	0/1:75:34,41:34:1224:41:1472:-108.034,0,-87.7469	0/1:55:30,25:30:1080:25:887:-62.2638,0,-80.805	1/1:89:0,89:0:0:89:3192:-278.769,-26.7917,0	1/1:58:0,58:0:0:58:2084:-182.599,-17.4597,0	1/1:59:0,59:0:0:59:2107:-184.352,-17.7608,0	1/1:255:0,255:0:0:255:9168:-811.38,-76.7627,0	1/1:111:0,111:0:0:111:3967:-348.664,-33.4143,0	1/1:112:0,112:0:0:112:4020:-358.425,-33.7154,0	0/1:93:55,38:55:1976:38:1363:-92.1232,0,-149.56	1/1:170:0,170:0:0:170:6068:-535.458,-51.1751,0	1/1:112:1,111:1:36:111:3992:-348.314,-30.1792,0	1/1:362:0,361:0:0:361:12937:-1150.98,-108.672,0	1/1:289:0,289:0:0:289:10325:-908.329,-86.9977,0	1/1:46:0,46:0:0:46:1643:-144.003,-13.8474,0	1/1:349:1,348:1:36:348:12461:-1107.66,-101.461,0	0/1:173:92,81:92:3304:81:2908:-203.342,0,-245.111	0/1:158:75,83:75:2673:83:2968:-216.282,0,-192.887	1/1:2:0,2:0:0:2:72:-6.71863,-0.60206,0	0/1:16:9,7:9:324:7:252:-17.7401,0,-24.6225	1/1:4:0,4:0:0:4:144:-12.8152,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.1124,-1.50515,0	0/1:16:12,4:12:432:4:144:-8.14351,0,-34.3764	0/1:218:106,112:106:3784:112:4008:-291.58,0,-274.953	0/1:297:191,106:191:6833:106:3812:-246.502,0,-524.744	0/1:101:50,51:50:1769:51:1836:-129.551,0,-128.877	.:.:.:.:.:.:.:.	1/1:142:0,142:0:0:142:5067:-445.904,-42.7463,0	0/1:51:21,30:21:756:30:1080:-79.1713,0,-52.9388	0/1:206:106,100:106:3812:100:3573:-253.808,0,-279.969	0/1:76:34,42:34:1211:42:1504:-110.254,0,-86.3133	0/1:78:39,39:39:1404:39:1404:-101.098,0,-103.063	1/1:95:0,95:0:0:95:3400:-301.485,-28.5979,0	0/1:156:76,80:76:2693:80:2845:-199.848,0,-195.417	0/1:204:97,107:97:3453:107:3848:-279.56,0,-249.232	0/1:137:58,79:58:2076:79:2824:-209.208,0,-145.392	1/1:125:0,125:0:0:125:4469:-395.027,-37.6288,0	0/1:186:78,108:78:2789:108:3876:-289.83,0,-195.145	0/1:11:6,5:6:216:5:180:-12.8195,0,-16.4792	0/1:191:91,100:91:3257:100:3592:-256.438,0,-235.423	1/1:78:0,78:0:0:78:2800:-249.819,-23.4803,0	0/1:15:12,3:12:432:3:108:-5.29211,0,-34.6775	1/1:90:0,90:0:0:90:3234:-284.37,-27.0927,0	1/1:69:0,68:0:0:68:2429:-214.416,-20.47,0	1/1:7:0,7:0:0:7:252:-22.87,-2.10721,0	0/1:39:24,15:24:864:15:540:-36.5618,0,-66.3342	0/1:136:62,74:62:2201:74:2656:-193.157,0,-156.941	1/1:185:0,185:0:0:185:6618:-587.51,-55.6906,0	1/1:9:0,9:0:0:9:324:-29.1297,-2.70927,0	1/1:237:0,237:0:0:237:8473:-756.74,-71.3441,0	1/1:255:2,253:2:72:253:9019:-792.787,-69.9259,0	0/1:88:49,39:49:1752:39:1400:-97.1887,0,-131.195	1/1:42:0,42:0:0:42:1500:-132.502,-12.6433,0	1/1:183:1,181:1:36:181:6504:-570.932,-51.547,0	0/1:108:70,38:70:2497:38:1360:-88.829,0,-192.24	0/1:41:15,26:15:540:26:936:-70.523,0,-36.5792	0/1:83:29,54:29:1036:54:1927:-143.398,0,-68.5033	0/1:110:54,56:54:1928:56:2000:-145.468,0,-140.56	1/1:29:0,29:0:0:29:1036:-92.5165,-8.72987,0	1/1:221:0,221:0:0:221:7924:-689.419,-66.5276,0	0/1:63:24,39:24:860:39:1392:-101.689,0,-58.5079	1/1:289:0,289:0:0:289:10323:-905.547,-86.9977,0	1/1:185:0,185:0:0:185:6635:-587.775,-55.6906,0	0/1:152:97,55:97:3469:55:1976:-126.214,0,-264.592	0/1:125:67,58:67:2385:58:2088:-142.858,0,-176.993	0/1:9:3,6:3:108:6:216:-16.5114,0,-7.35863	1/1:132:0,132:0:0:132:4728:-416.75,-39.736,0	1/1:67:0,67:0:0:67:2408:-211.122,-20.169,0	0/1:270:140,130:140:4998:130:4631:-328.798,0,-368.068	1/1:110:0,110:0:0:110:3900:-346.596,-33.1133,0	1/1:70:0,70:0:0:70:2496:-221.13,-21.0721,0	0/1:74:43,31:43:1525:31:1107:-75.9561,0,-115.221	1/1:167:1,166:1:36:166:5956:-523.602,-46.6737,0	0/1:47:24,23:24:864:23:819:-56.7429,0,-63.6796	0/1:81:26,55:26:936:55:1976:-148.56,0,-60.0082	0/1:72:36,36:36:1281:36:1292:-91.17,0,-93.8325	0/1:84:39,45:39:1404:45:1620:-116.039,0,-101.005	0/1:151:73,77:73:2605:77:2752:-197.737,0,-188.139	0/1:55:41,14:41:1468:14:491:-27.5046,0,-115.75	1/1:136:0,136:0:0:136:4884:-429.793,-40.9401,0	1/1:107:0,106:0:0:106:3797:-336.28,-31.9092,0
chr02	26819395	.	C	G	161509	PASS	AB=0.496201;ABP=3.7198;AC=134;AF=0.72043;AN=186;AO=7951;CIGAR=1X;DP=10808;DPB=10808;DPRA=0;EPP=17268.4;EPPR=6008.61;GTI=0;LEN=1;MEANALT=1.04301;MQM=44.4853;MQMR=57.198;NS=93;NUMALT=1;ODDS=2.99487;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284525;QR=102015;RO=2853;RPL=0;RPP=17268.4;RPPR=6008.61;RPR=7951;RUN=1;SAF=7951;SAP=17268.4;SAR=0;SRF=2853;SRP=6198.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:780:-66.7062,-6.62266,0	1/1:150:0,150:0:0:150:5366:-469.362,-45.1545,0	0/1:142:57,85:57:2035:85:3029:-220.068,0,-140.34	0/1:208:83,124:83:2963:124:4426:-327.306,0,-203.841	0/1:75:46,29:46:1652:29:1040:-68.9244,0,-126.237	0/1:57:29,28:29:1044:28:1000:-70.1543,0,-77.0061	0/1:176:79,97:79:2831:97:3464:-253.187,0,-201.926	0/1:186:99,87:99:3522:87:3117:-217.201,0,-260.59	0/1:83:46,37:46:1652:37:1332:-91.9611,0,-123.762	0/1:83:33,50:33:1180:50:1792:-133.435,0,-81.484	0/1:101:47,54:47:1675:54:1923:-140.221,0,-120.517	0/1:76:37,39:37:1323:39:1400:-99.4234,0,-96.1283	0/1:75:30,45:30:1061:45:1620:-118.409,0,-72.9426	0/1:107:57,50:57:2048:50:1800:-126.754,0,-151.679	0/1:75:35,40:35:1260:40:1432:-104.492,0,-90.9496	0/1:54:29,25:29:1044:25:896:-63.3027,0,-77.8685	1/1:87:0,87:0:0:87:3094:-270.577,-26.1896,0	1/1:60:0,60:0:0:60:2148:-188.283,-18.0618,0	1/1:59:0,59:0:0:59:2120:-185.412,-17.7608,0	1/1:253:0,252:0:0:252:9036:-799.415,-75.8596,0	1/1:108:0,108:0:0:108:3884:-340.979,-32.5112,0	1/1:111:0,111:0:0:111:3987:-355.431,-33.4143,0	0/1:92:57,35:57:2027:35:1256:-83.0643,0,-154.518	1/1:166:0,166:0:0:166:5933:-523.955,-49.971,0	1/1:109:1,108:1:36:108:3861:-336.861,-29.2761,0	1/1:358:0,358:0:0:358:12843:-1143.6,-107.769,0	1/1:283:0,283:0:0:283:10141:-892.06,-85.1915,0	1/1:45:0,45:0:0:45:1601:-140.168,-13.5464,0	1/1:347:0,347:0:0:347:12406:-1106.74,-104.457,0	0/1:172:92,80:92:3291:80:2868:-200.163,0,-244.259	0/1:157:75,82:75:2666:82:2925:-213.034,0,-192.355	1/1:2:0,2:0:0:2:72:-6.71863,-0.60206,0	0/1:16:9,7:9:311:7:252:-17.7401,0,-23.4908	1/1:5:0,5:0:0:5:180:-15.924,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.1124,-1.50515,0	0/1:16:12,4:12:428:4:144:-8.14351,0,-34.0155	0/1:217:108,109:108:3880:109:3874:-280.328,0,-283.891	0/1:294:189,105:189:6741:105:3772:-243.969,0,-517.419	0/1:100:51,49:51:1821:49:1725:-120.444,0,-133.84	.:.:.:.:.:.:.:.	1/1:139:0,139:0:0:139:4973:-437.852,-41.8432,0	0/1:53:23,30:23:809:30:1077:-78.4714,0,-57.0989	0/1:205:107,98:107:3820:98:3503:-247.939,0,-280.996	0/1:75:34,41:34:1207:41:1461:-107.164,0,-86.2604	0/1:77:39,38:39:1400:38:1364:-97.869,0,-103.005	1/1:92:0,92:0:0:92:3272:-290.774,-27.6948,0	0/1:152:75,77:75:2692:77:2756:-193.573,0,-196.482	0/1:202:97,105:97:3479:105:3740:-270.68,0,-252.152	0/1:138:58,80:58:2067:80:2851:-211.605,0,-144.62	1/1:126:0,126:0:0:126:4520:-399.335,-37.9298,0	0/1:185:78,107:78:2796:107:3809:-284.292,0,-196.078	0/1:11:6,5:6:207:5:180:-12.8195,0,-15.6556	0/1:191:91,100:91:3264:100:3593:-256.651,0,-236.051	1/1:74:0,74:0:0:74:2631:-234.877,-22.2762,0	0/1:15:12,3:12:432:3:108:-5.29211,0,-34.6775	1/1:90:0,90:0:0:90:3236:-284.413,-27.0927,0	1/1:67:0,67:0:0:67:2396:-211.579,-20.169,0	1/1:7:0,7:0:0:7:252:-22.87,-2.10721,0	0/1:39:24,15:24:864:15:540:-36.5618,0,-66.3342	0/1:136:64,72:64:2291:72:2561:-185.643,0,-165.001	1/1:184:0,184:0:0:184:6591:-585.323,-55.3895,0	1/1:9:0,9:0:0:9:324:-29.1297,-2.70927,0	1/1:234:0,234:0:0:234:8377:-748.021,-70.441,0	1/1:253:1,252:1:36:252:9006:-794.743,-72.5623,0	0/1:89:51,38:51:1820:38:1363:-93.8445,0,-137.05	1/1:41:0,41:0:0:41:1471:-130.125,-12.3422,0	1/1:178:1,177:1:36:177:6333:-555.704,-49.9851,0	0/1:107:70,37:70:2508:37:1324:-84.6571,0,-193.532	0/1:41:15,26:15:540:26:932:-70.1952,0,-36.5792	0/1:87:33,54:33:1179:54:1920:-141.384,0,-78.746	0/1:109:54,55:54:1927:55:1965:-142.628,0,-140.77	1/1:29:0,29:0:0:29:1040:-92.8558,-8.72987,0	1/1:219:0,219:0:0:219:7819:-681.876,-65.9256,0	0/1:66:25,41:25:900:41:1476:-107.999,0,-61.1989	1/1:277:0,277:0:0:277:9939:-872.26,-83.3853,0	1/1:184:0,183:0:0:183:6572:-582.572,-55.0885,0	0/1:153:96,57:96:3421:57:2033:-130.896,0,-259.907	0/1:126:69,57:69:2463:57:2039:-138.358,0,-183.776	0/1:9:3,6:3:104:6:216:-16.5114,0,-6.98772	1/1:130:0,130:0:0:130:4664:-411.038,-39.1339,0	1/1:65:0,65:0:0:65:2319:-203.528,-19.567,0	0/1:271:140,130:140:5023:130:4649:-330.286,0,-370.161	1/1:109:0,109:0:0:109:3908:-347.43,-32.8123,0	1/1:68:0,68:0:0:68:2431:-215.286,-20.47,0	0/1:71:42,29:42:1512:29:1036:-71.1144,0,-114.957	1/1:164:1,163:1:36:163:5868:-515.506,-45.7706,0	0/1:47:24,23:24:864:23:828:-57.4811,0,-63.6796	0/1:80:26,54:26:932:54:1920:-144.028,0,-59.95	0/1:74:38,36:38:1360:36:1296:-90.8786,0,-100.335	0/1:84:40,44:40:1432:44:1565:-112.032,0,-103.5	0/1:150:74,76:74:2639:76:2719:-195.199,0,-192.17	0/1:54:41,13:41:1464:13:460:-25.0543,0,-115.692	1/1:133:0,133:0:0:133:4732:-417.675,-40.037,0	1/1:107:0,107:0:0:107:3848:-340.846,-32.2102,0
chr02	26819422	.	A	C	46445.3	PASS	AB=0.497617;ABP=3.28974;AC=52;AF=0.27957;AN=186;AO=2824;CIGAR=1X;DP=10859;DPB=10859;DPRA=0.941138;EPP=6135.25;EPPR=17448.6;GTI=0;LEN=1;MEANALT=1.01786;MQM=57.2107;MQMR=44.4673;NS=93;NUMALT=1;ODDS=2.6492;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99896;QR=285540;RO=8034;RPL=2824;RPP=6135.25;RPPR=17448.6;RPR=0;RUN=1;SAF=2824;SAP=6135.25;SAR=0;SRF=8034;SRP=17448.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:833:0:0:0,-7.22472,-71.8272	0/0:151:151,0:151:5375:0:0:0,-45.4555,-469.193	0/1:142:86,56:86:3064:56:1963:-133.922,0,-223.247	0/1:207:123,84:123:4363:84:2990:-206.567,0,-321.964	0/1:76:30,46:30:1072:46:1608:-122.025,0,-70.4895	0/1:57:26,31:26:920:31:1092:-81.3155,0,-63.7693	0/1:177:98,79:98:3494:79:2782:-197.092,0,-255.042	0/1:186:90,96:90:3196:96:3390:-248.725,0,-224.041	0/1:86:39,47:39:1372:47:1660:-123.497,0,-94.8583	0/1:82:49,33:49:1752:33:1156:-79.4908,0,-129.897	0/1:104:56,48:56:1995:48:1677:-119.809,0,-145.73	0/1:77:41,36:41:1468:36:1280:-91.9488,0,-104.575	0/1:76:46,30:46:1619:30:1072:-73.6338,0,-118.351	0/1:107:52,55:52:1852:55:1951:-143.385,0,-131.466	0/1:74:41,33:41:1445:33:1180:-84.1593,0,-106.001	0/1:55:25,30:25:892:30:1055:-78.5767,0,-62.6738	0/0:88:88,0:88:3123:0:0:0,-26.4906,-273.262	0/0:60:60,0:60:2144:0:0:0,-18.0618,-187.973	0/0:59:59,0:59:2104:0:0:0,-17.7608,-184.171	0/0:254:254,0:254:9045:0:0:0,-76.4616,-800.803	0/0:111:111,0:111:3925:0:0:0,-33.4143,-344.576	0/0:111:111,0:111:3936:0:0:0,-33.4143,-351.007	0/1:94:38,56:38:1352:56:1970:-149.119,0,-90.9371	0/0:168:168,0:168:5967:0:0:0,-50.573,-527.042	0/0:112:111,1:111:3960:1:36:0,-30.1792,-345.887	0/0:357:357,0:357:12727:0:0:0,-107.468,-1132.96	0/0:286:286,0:286:10146:0:0:0,-86.0946,-892.726	0/0:46:46,0:46:1648:0:0:0,-13.8474,-144.251	0/0:346:346,0:346:12325:0:0:0,-104.156,-1099.39	0/1:169:81,88:81:2891:88:3129:-230.593,0,-203.278	0/1:158:82,76:82:2902:76:2696:-194.755,0,-210.816	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.37409	0/1:15:6,9:6:216:9:320:-24.5615,0,-14.9332	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.924	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.1124	0/1:16:4,12:4:140:12:423:-33.5624,0,-7.82524	0/1:220:112,108:112:3992:108:3839:-279.316,0,-289.619	0/1:291:106,185:106:3782:185:6513:-497.929,0,-245.805	0/1:100:50,50:50:1775:50:1772:-129.448,0,-124.802	.:.:.:.:.:.:.:.	0/0:141:141,0:141:5007:0:0:0,-42.4452,-440.93	0/1:53:30,23:30:1080:23:775:-54.0652,0,-78.5692	0/1:201:97,104:97:3454:104:3685:-270.39,0,-245.304	0/1:77:43,34:43:1540:34:1208:-85.7457,0,-113.306	0/1:78:39,39:39:1351:39:1379:-100.812,0,-96.5975	0/0:95:95,0:95:3365:0:0:0,-28.5978,-298.652	0/1:154:78,76:78:2739:76:2709:-197.424,0,-192.064	0/1:202:105,97:105:3728:97:3448:-249.457,0,-269.886	0/1:136:81,55:81:2878:55:1955:-134.81,0,-214.171	0/0:124:124,0:124:4426:0:0:0,-37.3277,-391.195	0/1:183:106,77:106:3771:77:2710:-188.961,0,-281.434	0/1:11:5,6:5:180:6:192:-14.2821,0,-12.8195	0/1:190:99,91:99:3512:91:3260:-235.994,0,-250.481	0/0:79:79,0:79:2801:0:0:0,-23.7814,-249.036	0/1:15:3,12:3:104:12:432:-34.6775,0,-4.97098	0/0:91:91,0:91:3244:0:0:0,-27.3937,-285.308	0/0:70:70,0:70:2508:0:0:0,-21.0721,-221.011	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.87	0/1:38:15,23:15:528:23:828:-63.3968,0,-35.8178	0/1:140:76,64:76:2675:64:2238:-159.147,0,-194.219	0/0:182:182,0:182:6474:0:0:0,-54.7875,-574.779	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.4454	0/0:235:235,0:235:8335:0:0:0,-70.742,-744.292	0/0:254:252,2:252:8951:2:72:0,-69.6249,-785.69	0/1:89:40,49:40:1436:49:1726:-128.66,0,-100.07	0/0:42:42,0:42:1504:0:0:0,-12.6433,-133.106	0/0:182:181,1:181:6392:1:36:0,-51.1892,-561.374	0/1:108:39,69:39:1381:69:2444:-187.664,0,-89.4442	0/1:41:26,15:26:928:15:532:-35.8568,0,-69.8674	0/1:86:55,31:55:1948:31:1107:-73.9753,0,-144.401	0/1:109:56,53:56:2000:53:1899:-138.3,0,-145.769	0/0:29:29,0:29:1024:0:0:0,-8.72987,-91.4986	0/0:219:219,0:219:7759:0:0:0,-65.9256,-676.754	0/1:64:40,24:40:1415:24:856:-57.8498,0,-104.598	0/0:283:283,0:283:10041:0:0:0,-85.1915,-880.924	0/0:181:181,0:181:6430:0:0:0,-54.4864,-570.047	0/1:152:57,95:57:2024:95:3332:-253.814,0,-130.246	0/1:127:58,69:58:2068:69:2444:-181.768,0,-141.117	0/1:9:6,3:6:212:3:108:-7.35863,0,-16.2196	0/0:132:132,0:132:4708:0:0:0,-39.736,-415.303	0/0:66:66,0:66:2356:0:0:0,-19.868,-206.773	0/1:266:128,138:128:4523:138:4909:-361.259,0,-321.128	0/0:110:110,0:110:3918:0:0:0,-33.1133,-347.946	0/0:70:70,0:70:2503:0:0:0,-21.0721,-221.878	0/1:74:31,43:31:1095:43:1521:-114.861,0,-74.9047	0/0:167:166,1:166:5902:1:36:0,-46.6737,-518.886	0/1:46:22,24:22:792:24:841:-62.0523,0,-54.6294	0/1:81:55,26:55:1968:26:928:-59.2898,0,-147.916	0/1:73:36,37:36:1288:37:1302:-95.4228,0,-90.5584	0/1:86:45,41:45:1603:41:1440:-103.635,0,-114.02	0/1:152:79,72:79:2803:72:2526:-181.247,0,-201.765	0/1:55:14,41:14:504:41:1464:-115.391,0,-28.6174	0/0:135:135,0:135:4788:0:0:0,-40.639,-421.802	0/0:106:106,0:106:3768:0:0:0,-31.9092,-334.639
chr02	26826482	.	T	C	244627	PASS	AB=0.506301;ABP=5.69225;AC=135;AF=0.718085;AN=188;AO=11526;CIGAR=1X;DP=15399;DPB=15399;DPRA=0;EPP=24607.6;EPPR=8291.79;GTI=1;LEN=1;MEANALT=1.08511;MQM=59.994;MQMR=60;NS=94;NUMALT=1;ODDS=2.35491;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=412005;QR=138137;RO=3861;RPL=49;RPP=24607.6;RPPR=8283.16;RPR=11477;RUN=1;SAF=0;SAP=25031.4;SAR=11526;SRF=1;SRP=8378.38;SRR=3860;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1863:-167.949,-15.6536,0	1/1:231:0,231:0:0:231:8273:-744.579,-69.5379,0	0/1:235:121,114:121:4317:114:4061:-294.935,0,-317.964	0/1:366:202,164:202:7256:164:5877:-418.861,0,-542.912	0/1:159:80,79:80:2864:79:2844:-208.333,0,-210.134	0/1:115:60,55:60:2156:55:1972:-143.136,0,-159.688	0/1:294:145,149:145:5185:149:5315:-389.982,0,-378.286	0/1:225:101,124:101:3601:124:4428:-330.958,0,-256.564	0/1:146:79,67:79:2844:67:2385:-170.956,0,-212.247	0/1:142:75,67:75:2671:67:2408:-174.23,0,-197.889	0/1:123:64,59:64:2296:59:2120:-154.042,0,-169.874	0/1:124:66,58:66:2372:58:2069:-149.151,0,-176.41	0/1:95:49,46:49:1760:46:1637:-119.021,0,-130.086	0/1:179:97,82:97:3450:82:2917:-208.88,0,-256.826	0/1:92:45,47:45:1597:47:1688:-124.512,0,-116.323	0/1:95:48,47:48:1716:47:1671:-122.078,0,-126.128	1/1:150:0,150:0:0:150:5373:-483.699,-45.1545,0	1/1:79:0,79:0:0:79:2844:-256.197,-23.7814,0	1/1:80:2,78:2:68:78:2774:-243.441,-17.6247,0	1/1:489:2,486:2:72:486:17426:-1561.12,-140.426,0	1/1:252:1,251:1:32:251:8925:-799.608,-72.6602,0	1/1:134:0,134:0:0:134:4769:-429.365,-40.338,0	0/1:185:74,111:74:2652:111:3973:-302.068,0,-183.236	1/1:241:1,240:1:36:240:8562:-766.978,-68.95,0	1/1:123:0,123:0:0:123:4386:-394.911,-37.0267,0	1/1:488:1,487:1:36:487:17354:-1557.89,-143.304,0	1/1:385:0,384:0:0:384:13713:-1233.59,-115.596,0	1/1:60:1,59:1:36:59:2120:-187.47,-14.4635,0	1/1:589:0,589:0:0:589:21037:-1892.8,-177.307,0	0/1:179:87,92:87:3120:92:3281:-241.624,0,-227.142	0/1:262:125,137:125:4457:137:4897:-362.011,0,-322.431	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:37:17,20:17:608:20:709:-52.9966,0,-43.9139	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:287:132,155:132:4713:155:5561:-414.216,0,-337.933	0/1:220:104,116:104:3740:116:4130:-305.656,0,-270.572	0/1:115:67,48:67:2387:48:1712:-119.747,0,-180.469	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:256:0,256:0:0:256:9116:-820.415,-77.0637,0	0/1:51:23,28:23:824:28:998:-74.7817,0,-59.1308	0/1:181:93,88:93:3317:88:3148:-229.059,0,-244.261	0/1:125:62,63:62:2224:63:2260:-166.034,0,-162.795	0/1:96:46,50:46:1644:50:1800:-133.383,0,-119.35	1/1:119:0,119:0:0:119:4272:-384.657,-35.8226,0	0/1:161:78,83:78:2804:83:2969:-218.975,0,-204.133	0/1:279:138,141:138:4939:141:5056:-371.197,0,-360.672	0/1:154:59,95:59:2116:95:3395:-259.405,0,-144.35	1/1:220:1,219:1:36:219:7801:-698.521,-62.6283,0	0/1:171:72,99:72:2568:99:3552:-268.411,0,-179.894	0/1:10:4,6:4:140:6:208:-16.0465,0,-9.93428	0/1:254:114,140:114:4069:140:5028:-376.203,0,-289.934	1/1:112:0,112:0:0:112:4032:-363.066,-33.7154,0	0/1:31:14,17:14:504:17:612:-46.0815,0,-36.3662	1/1:219:2,217:2:72:217:7789:-694.199,-59.0888,0	1/1:98:0,93:0:0:93:3336:-300.097,-27.9958,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:28:11,17:11:396:17:608:-46.6232,0,-27.5539	0/1:198:91,107:91:3238:107:3828:-285.113,0,-232.035	1/1:303:0,303:0:0:303:10864:-977.655,-91.2121,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:204:1,203:1:36:203:7222:-646.436,-57.8118,0	1/1:247:4,243:4:144:243:8707:-770.305,-61.0408,0	0/1:170:91,79:91:3260:79:2776:-198.905,0,-242.445	1/1:129:1,128:1:36:128:4566:-407.505,-35.2346,0	1/1:303:0,303:0:0:303:10789:-970.914,-91.2121,0	0/1:188:111,77:111:3988:77:2768:-192.767,0,-302.515	0/1:53:24,29:24:837:29:1029:-76.9665,0,-59.6911	0/1:137:78,59:78:2800:59:2109:-148.837,0,-210.998	0/1:122:47,75:47:1665:75:2664:-203.279,0,-113.41	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:154:0,154:0:0:154:5513:-496.294,-46.3586,0	0/1:106:57,49:57:2052:49:1743:-125.244,0,-153.042	1/1:380:0,379:0:0:379:13522:-1216.56,-114.09,0	1/1:237:1,236:1:36:236:8453:-757.171,-67.7458,0	0/1:142:70,72:70:2493:72:2588:-190.422,0,-181.875	0/1:148:77,71:77:2760:71:2552:-185.378,0,-204.089	0/1:30:10,20:10:356:20:709:-55.1046,0,-23.3503	1/1:182:0,182:0:0:182:6506:-585.622,-54.7875,0	1/1:192:0,191:0:0:191:6833:-614.826,-57.4967,0	0/1:438:222,216:222:7945:216:7744:-565.138,0,-583.221	1/1:141:1,140:1:36:140:4993:-445.918,-38.847,0	1/1:109:1,107:1:21:107:3846:-344.159,-30.6962,0	0/1:115:64,51:64:2287:51:1836:-130.902,0,-171.473	1/1:210:2,208:2:72:208:7448:-663.524,-56.3796,0	0/1:58:28,30:28:1004:30:1080:-80.0535,0,-73.2161	0/1:123:66,57:66:2372:57:2028:-145.764,0,-176.711	0/1:111:52,59:52:1868:59:2103:-156.123,0,-134.985	0/1:92:44,48:44:1580:48:1724:-127.751,0,-114.797	0/1:213:98,115:98:3512:115:4131:-307.853,0,-252.17	0/1:99:50,48:50:1792:48:1716:-124.943,0,-131.78	1/1:233:0,233:0:0:233:8298:-746.831,-70.14,0	1/1:151:1,149:1:36:149:5323:-475.604,-41.9161,0
chr02	26922323	.	C	T	39878.7	PASS	AB=0.477556;ABP=27.5734;AC=53;AF=0.284946;AN=186;AO=2702;CIGAR=1X;DP=10761;DPB=10761;DPRA=0.923618;EPP=5870.33;EPPR=17481.2;GTI=3;LEN=1;MEANALT=1.03279;MQM=39.4249;MQMR=40.9088;NS=93;NUMALT=1;ODDS=1.87639;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95707;QR=285219;RO=8057;RPL=2702;RPP=5870.33;RPPR=17498.6;RPR=0;RUN=1;SAF=2702;SAP=5870.33;SAR=0;SRF=8055;SRP=17481.2;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:79:79,0:79:2813:0:0:0,-23.7814,-192.649	0/0:139:139,0:139:4925:0:0:0,-41.8432,-408.524	0/1:121:64,57:64:2260:57:2015:-134.7,0,-150.146	0/1:189:110,79:110:3939:79:2800:-186.129,0,-228.126	0/1:71:57,14:57:2016:14:496:-22.1446,0,-149.49	0/1:75:38,37:38:1360:37:1324:-89.8944,0,-90.6246	0/1:153:96,57:96:3388:57:2023:-129.457,0,-219.329	0/1:183:83,100:83:2962:100:3556:-245.241,0,-175.045	0/1:121:50,71:50:1770:71:2508:-175.114,0,-71.5306	0/1:97:57,40:57:2020:40:1397:-89.4043,0,-125.777	0/1:79:42,37:42:1500:37:1280:-87.4199,0,-103.37	0/1:118:53,65:53:1892:65:2258:-156.325,0,-105.175	0/1:72:42,30:42:1504:30:1080:-67.9942,0,-94.0592	0/1:117:60,56:60:2122:56:1974:-136.663,0,-133.013	0/1:82:35,47:35:1243:47:1688:-119.095,0,-70.4331	0/1:60:29,31:29:1021:31:1096:-77.1619,0,-63.2418	0/0:129:129,0:129:4560:0:0:0,-38.8329,-402.149	0/0:59:59,0:59:2074:0:0:0,-17.7608,-172.639	0/0:33:33,0:33:1169:0:0:0,-9.93399,-98.1563	0/0:218:218,0:218:7702:0:0:0,-65.6245,-601.853	0/0:146:145,1:145:5120:1:36:0,-40.4697,-403.312	0/0:206:205,1:205:7255:1:36:0,-58.5315,-541.516	0/1:81:24,57:24:851:57:2035:-151.904,0,-28.0056	0/0:163:163,0:163:5763:0:0:0,-49.0679,-455.636	0/0:101:101,0:101:3573:0:0:0,-30.404,-237.835	0/0:433:433,0:433:15292:0:0:0,-130.346,-1162.32	0/0:264:264,0:264:9271:0:0:0,-79.4719,-723.035	0/0:48:48,0:48:1679:0:0:0,-14.4494,-146.955	0/0:304:304,0:304:10786:0:0:0,-91.5131,-854.323	0/1:219:108,111:108:3813:111:3951:-276.795,0,-240.685	0/1:193:82,111:82:2916:111:3905:-277.012,0,-185.275	.:.:.:.:.:.:.:.	0/1:12:5,7:5:180:7:248:-18.2753,0,-7.37694	0/0:9:9,0:9:320:0:0:0,-2.70927,-16.8195	0/0:4:4,0:4:140:0:0:0,-1.20412,-10.7284	0/1:7:5,2:5:171:2:72:-4.32923,0,-11.3877	0/1:289:153,136:153:5424:136:4791:-328.047,0,-328.762	0/1:202:123,79:123:4346:79:2795:-180.965,0,-288.874	0/1:83:41,42:41:1460:42:1478:-100.671,0,-101.076	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0205	0/0:136:136,0:136:4818:0:0:0,-40.9401,-396.854	0/1:39:26,13:26:914:13:468:-29.2475,0,-64.9123	0/1:139:83,56:83:2904:56:1999:-132.55,0,-161.527	0/1:96:39,57:39:1396:57:2036:-145.283,0,-83.6641	0/1:83:39,44:39:1379:44:1576:-110.893,0,-79.6113	0/0:95:95,0:95:3382:0:0:0,-28.5978,-220.097	0/1:157:93,64:93:3242:64:2291:-147.068,0,-200.378	0/1:210:103,106:103:3680:106:3722:-259.703,0,-220.624	0/1:155:76,79:76:2692:79:2814:-195.924,0,-158.789	0/0:162:162,0:162:5744:0:0:0,-48.7669,-473.417	0/1:171:114,57:114:4059:57:1998:-122.375,0,-237.656	0/1:6:4,2:4:140:2:72:-4.75735,0,-11.0601	0/1:126:86,40:86:3055:40:1407:-81.9423,0,-205.846	0/0:56:55,1:55:1950:1:36:0,-13.2991,-149.816	0/1:13:4,9:4:140:9:324:-23.8649,0,-8.89721	0/0:130:129,1:129:4590:1:32:0,-35.9854,-366.022	0/0:46:46,0:46:1635:0:0:0,-13.8474,-105.535	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0205	0/1:24:17,7:17:604:7:248:-14.748,0,-33.1609	0/1:87:53,34:53:1895:34:1212:-79.6602,0,-113.342	0/0:173:171,2:171:6091:2:72:0,-45.5147,-488.515	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.5954	0/0:204:204,0:204:7243:0:0:0,-61.4101,-616.208	0/0:255:255,0:255:9028:0:0:0,-76.7626,-718.27	0/1:103:61,42:61:2184:42:1476:-97.3278,0,-151.944	0/0:100:99,1:99:3489:1:36:0,-26.6485,-274.539	0/0:145:144,1:144:5082:1:36:0,-40.1949,-398.959	0/1:99:44,55:44:1551:55:1954:-139.427,0,-93.2902	0/1:42:23,19:23:816:19:672:-46.1541,0,-60.6847	0/1:91:45,46:45:1569:46:1631:-110.643,0,-96.6584	0/1:122:62,60:62:2198:60:2132:-148.823,0,-119.173	0/0:18:18,0:18:626:0:0:0,-5.41854,-49.1457	0/0:159:159,0:159:5583:0:0:0,-47.8638,-384.605	0/1:58:25,33:25:879:33:1156:-78.7454,0,-38.7067	0/0:194:194,0:194:6876:0:0:0,-58.3998,-588.802	0/0:114:114,0:114:4065:0:0:0,-34.3174,-319.524	0/1:170:105,65:105:3705:65:2332:-145.415,0,-228.49	0/1:144:70,74:70:2460:74:2626:-178.723,0,-157.149	1/1:11:1,10:1:36:10:356:-29.27,-2.01339,0	0/0:126:126,0:126:4448:0:0:0,-37.9298,-366.232	0/0:129:129,0:129:4571:0:0:0,-38.8329,-326.821	0/1:208:122,86:122:4282:86:3029:-199.747,0,-263.687	0/0:112:112,0:112:3942:0:0:0,-33.7154,-328.613	0/0:94:94,0:94:3323:0:0:0,-28.2968,-277.248	0/1:123:48,75:48:1705:75:2683:-195.017,0,-106.02	0/0:166:164,2:164:5820:2:72:0,-43.4074,-473.342	0/1:55:23,32:23:808:32:1148:-80.9549,0,-40.2459	0/1:92:50,42:50:1766:42:1499:-99.548,0,-100.16	0/1:106:45,61:45:1595:61:2157:-151.289,0,-82.2853	0/1:54:29,25:29:1040:25:887:-61.2185,0,-69.9738	0/1:112:52,60:52:1832:60:2090:-148.685,0,-121.204	0/1:105:33,72:33:1179:72:2550:-189.455,0,-57.9977	0/0:60:60,0:60:2139:0:0:0,-18.0618,-187.752	0/0:116:115,1:115:4073:1:36:0,-31.465,-327.757
chr02	26925029	.	G	C	51382.8	PASS	AB=0.512816;ABP=11.4149;AC=52;AF=0.27957;AN=186;AO=3034;CIGAR=1X;DP=11681;DPB=11681;DPRA=1.05614;EPP=6591.26;EPPR=18766.7;GTI=0;LEN=1;MEANALT=1.06667;MQM=59.973;MQMR=59.8101;NS=93;NUMALT=1;ODDS=10.0711;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108325;QR=308912;RO=8641;RPL=0;RPP=6591.26;RPPR=18766.7;RPR=3034;RUN=1;SAF=3034;SAP=6591.26;SAR=0;SRF=8641;SRP=18766.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.177	0/0:269:268,0:268:9599:0:0:0,-80.676,-863.468	0/1:83:43,40:43:1548:40:1423:-103.381,0,-114.549	0/1:273:122,150:122:4369:150:5325:-397.135,0,-311.142	0/1:97:54,43:54:1940:43:1544:-110.053,0,-145.673	0/1:87:43,44:43:1532:44:1576:-115.942,0,-111.983	0/1:198:83,115:83:2957:115:4078:-307.605,0,-206.759	0/1:225:112,113:112:4001:113:4022:-294.438,0,-292.521	0/1:99:55,44:55:1953:44:1580:-112.69,0,-146.237	0/1:125:75,50:75:2669:50:1792:-123.934,0,-202.826	0/1:91:37,54:37:1313:54:1936:-147.118,0,-91.0574	0/1:71:34,37:34:1220:37:1320:-97.7288,0,-88.7333	0/1:72:32,40:32:1144:40:1427:-107.053,0,-81.1644	0/1:87:35,52:35:1252:52:1852:-140.77,0,-86.7936	0/1:73:32,41:32:1152:41:1458:-109.536,0,-82.014	0/1:68:24,44:24:860:44:1572:-121.302,0,-57.25	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.372	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.851	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:238:238,0:238:8505:0:0:0,-71.6451,-765.317	0/0:172:172,0:172:6141:0:0:0,-51.7772,-552.713	0/0:187:187,0:187:6716:0:0:0,-56.2926,-604.489	0/1:185:91,94:91:3234:94:3337:-244.819,0,-235.46	0/0:143:143,0:143:5131:0:0:0,-43.0473,-461.925	0/0:109:109,0:109:3881:0:0:0,-32.8123,-349.254	0/0:400:397,2:397:14203:2:72:0,-113.634,-1271.13	0/0:223:223,0:223:7983:0:0:0,-67.1297,-718.38	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.612	0/0:342:339,3:339:12137:3:108:0,-92.8771,-1082.08	0/1:259:143,116:143:5117:116:4165:-297.064,0,-381.714	0/1:179:84,95:84:2997:95:3411:-253.319,0,-216.073	.:.:.:.:.:.:.:.	0/1:24:12,12:12:432:12:417:-30.6355,0,-31.9965	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.5676	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.911	0/1:209:86,123:86:3080:123:4420:-335.055,0,-214.513	0/1:277:174,103:174:6202:103:3670:-247.118,0,-474.747	0/1:79:35,44:35:1256:44:1571:-117.899,0,-89.5631	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:158:158,0:158:5640:0:0:0,-47.5627,-507.609	0/1:38:13,25:13:468:25:900:-69.8819,0,-31.0196	0/1:129:82,47:82:2925:47:1685:-113.104,0,-224.022	0/1:61:21,40:21:752:40:1440:-111.534,0,-49.6328	0/1:60:29,31:29:1040:31:1096:-80.8881,0,-75.8419	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.911	0/1:186:95,91:95:3393:91:3259:-237.538,0,-249.574	0/1:220:111,109:111:3954:109:3887:-283.799,0,-289.805	0/1:144:90,54:90:3187:54:1936:-131.168,0,-243.657	0/0:200:200,0:200:7161:0:0:0,-60.206,-644.544	0/1:213:88,125:88:3149:125:4432:-334.934,0,-219.486	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:137:80,57:80:2861:57:2042:-142.811,0,-216.483	0/0:102:102,0:102:3653:0:0:0,-30.7051,-328.971	0/1:23:15,8:15:525:8:288:-19.3437,0,-40.6367	0/0:188:187,1:187:6689:1:32:0,-53.3943,-598.718	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:21:15,6:15:540:6:216:-13.4689,0,-42.6149	0/1:90:45,44:45:1612:44:1571:-114.529,0,-118.196	0/0:150:149,1:149:5341:1:36:0,-41.5562,-476.525	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9375	0/0:253:253,0:253:9049:0:0:0,-76.1606,-814.14	0/0:218:216,2:216:7707:2:72:0,-58.7878,-686.64	0/1:82:42,40:42:1504:40:1425:-103.861,0,-110.969	0/0:124:123,0:123:4340:0:0:0,-37.0267,-390.363	0/0:297:296,1:296:10601:1:36:0,-85.8076,-950.11	0/1:248:81,167:81:2863:167:5960:-461.854,0,-183.245	0/1:49:20,29:20:720:29:1040:-79.1639,0,-50.3783	0/1:105:47,58:47:1692:58:2084:-156.222,0,-120.958	0/1:94:44,49:44:1569:49:1752:-129.609,0,-113.139	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:224:224,0:224:7965:0:0:0,-67.4307,-716.839	0/1:54:24,30:24:860:30:1068:-80.1764,0,-61.4662	0/0:346:346,0:346:12341:0:0:0,-104.156,-1109.6	0/0:138:138,0:138:4922:0:0:0,-41.5421,-443.127	0/1:187:99,88:99:3556:88:3147:-227.158,0,-263.637	0/1:125:56,69:56:2008:69:2461:-184.114,0,-143.365	0/1:10:4,6:4:144:6:208:-16.0488,0,-9.73211	0/0:115:115,0:115:4121:0:0:0,-34.6184,-371.063	0/0:139:139,0:139:4962:0:0:0,-41.8432,-446.664	0/1:232:127,105:127:4552:105:3756:-268.401,0,-339.472	0/0:117:117,0:117:4162:0:0:0,-35.2205,-374.715	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.548	0/1:71:31,40:31:1101:40:1427:-107.354,0,-78.0219	0/0:121:119,2:119:4275:2:72:0,-29.5879,-377.991	0/1:46:19,27:19:680:27:955:-72.4175,0,-47.6794	0/1:71:33,38:33:1172:38:1362:-101.508,0,-84.3946	0/1:68:24,44:24:860:44:1568:-120.942,0,-57.25	0/1:55:31,24:31:1116:24:856:-60.8045,0,-84.195	0/1:138:68,70:68:2448:70:2500:-183.709,0,-179.014	0/1:50:19,31:19:684:31:1104:-84.6191,0,-46.8388	0/0:183:183,0:183:6541:0:0:0,-55.0885,-588.725	0/0:74:73,1:73:2620:1:36:0,-18.6779,-232.449
chr02	26925043	.	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chr02	26925075	.	C	G	173799	PASS	AB=0.481876;ABP=19.6185;AC=134;AF=0.72043;AN=186;AO=8425;CIGAR=1X;DP=11460;DPB=11460;DPRA=0;EPP=18297.7;EPPR=6573.89;GTI=0;LEN=1;MEANALT=1.07527;MQM=59.8402;MQMR=59.9954;NS=93;NUMALT=1;ODDS=12.4901;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=296739;QR=105746;RO=3026;RPL=8403;RPP=18107.1;RPPR=6573.89;RPR=22;RUN=1;SAF=8403;SAP=18107.1;SAR=22;SRF=3026;SRP=6573.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1223:-110.373,-10.5361,0	1/1:260:0,260:0:0:260:9176:-825.799,-78.2678,0	0/1:84:42,42:42:1465:42:1488:-108.872,0,-106.856	0/1:269:149,120:149:5170:120:4231:-299.726,0,-384.471	0/1:95:43,52:43:1516:52:1852:-138.359,0,-108.133	0/1:87:44,43:44:1555:43:1486:-107.842,0,-114.051	0/1:194:111,83:111:3894:83:2888:-201.74,0,-292.258	0/1:217:110,107:110:3823:107:3807:-277.447,0,-278.943	0/1:92:44,48:44:1526:48:1702:-125.769,0,-109.933	0/1:123:48,75:48:1695:75:2636:-200.459,0,-115.809	0/1:88:53,35:53:1850:35:1200:-81.8085,0,-140.288	0/1:69:37,32:37:1291:32:1110:-79.4339,0,-95.7191	0/1:72:40,32:40:1411:32:1140:-81.0045,0,-105.612	0/1:87:52,35:52:1822:35:1193:-81.4795,0,-138.07	0/1:73:40,33:40:1412:33:1137:-80.6573,0,-105.402	0/1:65:43,22:43:1506:22:784:-51.3151,0,-116.262	1/1:60:0,60:0:0:60:2114:-190.524,-18.0618,0	1/1:44:0,44:0:0:44:1525:-137.54,-13.2453,0	1/1:40:0,40:0:0:40:1416:-127.737,-12.0412,0	1/1:221:0,221:0:0:221:7777:-699.936,-66.5276,0	1/1:172:0,172:0:0:172:6044:-544.067,-51.7772,0	1/1:180:0,180:0:0:180:6308:-567.799,-54.1854,0	0/1:184:93,91:93:3273:91:3212:-233.914,0,-239.4	1/1:139:0,139:0:0:139:4855:-437.108,-41.8432,0	1/1:108:0,107:0:0:107:3712:-333.876,-32.2102,0	1/1:391:2,389:2:72:389:13746:-1230.09,-110.866,0	1/1:218:0,217:0:0:217:7670:-689.893,-65.3235,0	1/1:43:0,43:0:0:43:1518:-136.911,-12.9443,0	1/1:331:3,328:3:108:328:11595:-1033.34,-89.5658,0	0/1:255:114,141:114:3956:141:4965:-369.837,0,-279.471	0/1:176:96,80:96:3379:80:2767:-196.244,0,-251.349	.:.:.:.:.:.:.:.	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:18:0,18:0:0:18:636:-57.5676,-5.41854,0	0/1:17:10,7:10:352:7:252:-17.911,0,-26.9007	0/1:208:122,86:122:4219:86:2999:-207.527,0,-317.281	0/1:272:105,167:105:3679:167:5850:-444.665,0,-249.434	0/1:76:41,35:41:1420:35:1252:-90.106,0,-105.214	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:154:0,154:0:0:154:5417:-487.625,-46.3586,0	0/1:37:25,12:25:859:12:432:-28.0822,0,-66.4826	0/1:127:47,80:47:1651:80:2823:-215.449,0,-110.646	0/1:62:42,20:42:1427:20:712:-45.7321,0,-110.056	0/1:60:32,28:32:1107:28:944:-67.2029,0,-81.8713	1/1:106:0,106:0:0:106:3768:-339.318,-31.9092,0	0/1:182:93,89:93:3244:89:3167:-230.45,0,-237.395	0/1:218:108,110:108:3818:110:3860:-281.955,0,-278.196	0/1:139:53,86:53:1904:86:3050:-232.887,0,-129.795	1/1:195:0,195:0:0:195:6916:-622.513,-58.7009,0	0/1:211:124,87:124:4325:87:3027:-209.132,0,-325.916	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:138:58,80:58:2023:80:2834:-213.756,0,-140.798	1/1:99:0,99:0:0:99:3527:-317.639,-29.802,0	0/1:21:8,13:8:284:13:460:-35.396,0,-19.5817	1/1:183:1,182:1:21:182:6387:-572.563,-52.9885,0	1/1:71:0,71:0:0:71:2500:-225.252,-21.3731,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:22:8,14:8:270:14:500:-38.7135,0,-18.005	0/1:93:46,47:46:1618:47:1664:-122.029,0,-117.912	1/1:143:1,142:1:36:142:5008:-447.205,-39.449,0	1/1:11:0,11:0:0:11:374:-33.9804,-3.31133,0	1/1:247:0,247:0:0:247:8780:-790.148,-74.3544,0	1/1:212:2,210:2:72:210:7393:-658.45,-56.9816,0	0/1:81:40,41:40:1362:41:1468:-108.032,0,-98.4863	1/1:124:0,124:0:0:124:4358:-391.997,-37.3277,0	1/1:296:1,294:1:36:294:10388:-930.752,-85.5654,0	0/1:250:167,82:167:5830:82:2900:-185.908,0,-449.506	0/1:50:29,21:29:1019:21:725:-50.5159,0,-76.9698	0/1:102:58,44:58:2003:44:1545:-108.634,0,-149.834	0/1:93:50,43:50:1750:43:1506:-107.835,0,-129.787	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:215:0,213:0:0:213:7509:-675.501,-64.1194,0	0/1:53:30,23:30:1064:23:820:-58.1679,0,-80.1171	1/1:329:0,329:0:0:329:11600:-1043.86,-99.0389,0	1/1:137:0,137:0:0:137:4845:-436.206,-41.2411,0	0/1:191:88,103:88:3064:103:3617:-268.171,0,-218.484	0/1:122:69,53:69:2438:53:1895:-134.102,0,-182.95	0/1:10:6,4:6:203:4:144:-9.73211,0,-15.5909	1/1:113:0,112:0:0:112:3958:-356.043,-33.7154,0	1/1:135:0,135:0:0:135:4789:-431.152,-40.6391,0	0/1:229:104,123:104:3661:123:4326:-320.838,0,-261.024	1/1:116:0,116:0:0:116:4035:-363.298,-34.9195,0	1/1:75:0,75:0:0:75:2666:-240.071,-22.5773,0	0/1:71:41,30:41:1410:30:1041:-72.623,0,-105.821	1/1:115:2,113:2:72:113:3984:-351.893,-27.7817,0	0/1:47:28,19:28:987:19:662:-45.7517,0,-74.9946	0/1:70:39,31:39:1351:31:1079:-76.2994,0,-100.815	0/1:69:43,26:43:1519:26:906:-61.0747,0,-116.231	0/1:55:24,31:24:830:31:1093:-82.121,0,-58.4557	0/1:134:68,66:68:2350:66:2296:-166.56,0,-171.42	0/1:50:30,20:30:1064:20:716:-49.7162,0,-81.0202	1/1:177:0,177:0:0:177:6201:-557.828,-53.2823,0	1/1:73:1,72:1:36:72:2502:-221.832,-18.3769,0
chr02	26940820	.	G	A	38745.5	PASS	AB=0.584916;ABP=237.188;AC=52;AF=0.27957;AN=186;AO=2199;CIGAR=1X;DP=6513;DPB=6513;DPRA=1.58576;EPP=4726.1;EPPR=9227.88;GTI=4;LEN=1;MEANALT=1.08197;MQM=59.9741;MQMR=59.971;NS=93;NUMALT=1;ODDS=0.286804;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78407;QR=153297;RO=4308;RPL=6;RPP=4726.1;RPPR=9227.88;RPR=2193;RUN=1;SAF=2199;SAP=4778.08;SAR=0;SRF=4308;SRP=9357.71;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.484	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/1:110:58,52:58:2057:52:1842:-132.944,0,-152.286	0/1:206:97,109:97:3452:109:3863:-285.851,0,-248.88	0/1:69:24,45:24:860:45:1601:-123.607,0,-56.9508	0/1:41:10,31:10:360:31:1101:-87.0561,0,-20.4021	0/1:90:36,54:36:1292:54:1914:-145.441,0,-89.4911	0/1:84:37,47:37:1298:47:1692:-127.28,0,-91.8306	0/1:73:29,44:29:1006:44:1569:-119.524,0,-68.8714	0/1:70:24,46:24:860:46:1635:-126.365,0,-56.6497	0/1:49:19,30:19:680:30:1076:-82.4,0,-46.6922	0/1:84:40,44:40:1425:44:1584:-117.565,0,-103.259	0/1:67:31,36:31:1116:36:1292:-96.4148,0,-80.5827	0/1:56:27,29:27:968:29:1040:-77.0567,0,-70.5797	0/1:55:18,36:18:648:36:1292:-99.9683,0,-42.0364	0/1:52:26,26:26:913:26:921:-67.5516,0,-66.8304	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:32:32,0:32:1137:0:0:0,-9.63296,-102.637	0/0:66:66,0:66:2346:0:0:0,-19.868,-211.396	0/0:121:121,0:121:4317:0:0:0,-36.4246,-388.706	0/0:64:63,0:63:2204:0:0:0,-18.9649,-198.407	0/1:159:48,111:48:1701:111:3901:-303.417,0,-105.338	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:192:191,1:191:6736:1:36:0,-54.1995,-602.714	0/0:196:194,2:194:6855:2:72:0,-52.1652,-610.153	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:230:229,1:229:8172:1:36:0,-65.6386,-731.892	0/1:101:49,52:49:1760:52:1864:-137.635,0,-128.28	0/1:95:41,54:41:1457:54:1939:-146.132,0,-102.826	.:.:.:.:.:.:.:.	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:12:9,3:9:297:3:108:-6.18351,0,-23.4379	0/1:139:71,68:71:2552:68:2411:-175.401,0,-188.087	0/1:131:60,71:60:2145:71:2529:-188.42,0,-153.881	0/1:41:19,22:19:676:22:792:-59.2634,0,-48.8258	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:78:78,0:78:2793:0:0:0,-23.4803,-251.608	0/1:29:16,13:16:572:13:468:-33.7298,0,-43.0836	0/1:133:39,94:39:1400:94:3353:-261.948,0,-86.2622	0/1:44:31,13:31:1112:13:468:-29.2143,0,-87.146	0/1:39:24,15:24:856:15:525:-35.8379,0,-65.6209	0/0:60:60,0:60:2103:0:0:0,-18.0618,-189.534	0/1:63:17,46:17:585:46:1652:-130.004,0,-34.007	0/1:124:51,73:51:1787:73:2571:-194.308,0,-123.779	0/1:80:28,52:28:965:52:1853:-142.965,0,-63.0739	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:101:35,64:35:1256:64:2304:-177.531,0,-83.2544	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:81:30,51:30:1080:51:1828:-140.418,0,-73.1298	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:9:3,6:3:108:6:201:-15.7078,0,-7.3659	0/0:126:124,2:124:4354:2:68:0,-31.4721,-385.574	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	0/1:108:50,58:50:1758:58:2061:-153.248,0,-125.988	0/0:97:96,1:96:3456:1:36:0,-25.6016,-307.653	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:121:121,0:121:4329:0:0:0,-36.4246,-389.784	0/0:88:88,0:88:3111:0:0:0,-26.4906,-280.214	0/1:54:19,35:19:669:35:1260:-97.4499,0,-44.2783	0/0:50:50,0:50:1747:0:0:0,-15.0515,-157.508	0/0:75:74,1:74:2660:1:36:0,-18.979,-236.047	0/1:187:42,145:42:1504:145:5174:-409.506,0,-79.3564	0/1:24:14,10:14:500:10:356:-25.1565,0,-38.1115	0/1:52:20,32:20:720:32:1148:-87.9763,0,-49.4752	0/1:41:20,21:20:712:21:748:-55.3027,0,-52.0644	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/0:99:99,0:99:3533:0:0:0,-29.802,-318.178	0/1:52:10,42:10:345:42:1485:-118.283,0,-15.7273	0/0:81:81,0:81:2878:0:0:0,-24.3834,-259.231	0/0:123:123,0:123:4401:0:0:0,-37.0267,-396.261	0/1:82:27,55:27:964:55:1946:-150.728,0,-62.3924	0/1:53:25,28:25:900:28:1008:-75.0818,0,-65.3664	0/1:5:1,4:1:36:4:129:-10.4225,0,-2.09312	0/0:55:53,1:53:1896:1:36:0,-12.9423,-167.392	0/0:72:72,0:72:2565:0:0:0,-21.6742,-230.909	0/1:168:58,110:58:2076:110:3948:-304.938,0,-136.537	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.668	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/1:29:19,10:19:684:10:360:-24.0144,0,-53.1605	0/0:94:92,2:92:3296:2:72:0,-21.4601,-290.022	0/1:27:10,17:10:360:17:599:-46.1109,0,-24.6165	0/1:69:35,34:35:1260:34:1224:-89.696,0,-92.9344	0/1:65:38,27:38:1368:27:968:-67.8704,0,-103.854	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:128:67,60:67:2404:60:2156:-155.716,0,-178.026	0/1:57:26,31:26:928:31:1112:-83.2326,0,-66.6795	0/0:90:89,1:89:3109:1:36:0,-23.4944,-276.433	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57
chr02	26940853	.	T	C	83101.1	PASS	AB=0.408919;ABP=269.618;AC=134;AF=0.72043;AN=186;AO=4208;CIGAR=1X;DP=6411;DPB=6411;DPRA=0;EPP=9140.57;EPPR=4758.54;GTI=4;LEN=1;MEANALT=1.03226;MQM=59.9712;MQMR=59.9872;NS=93;NUMALT=1;ODDS=0.94498;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148132;QR=78316;RO=2194;RPL=4208;RPP=9140.57;RPPR=4758.54;RPR=0;RUN=1;SAF=4208;SAP=9140.57;SAR=0;SRF=2194;SRP=4767.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:848:-76.6397,-7.22472,0	1/1:28:0,28:0:0:28:995:-89.864,-8.42884,0	0/1:110:53,57:53:1882:57:1984:-145.717,0,-136.544	0/1:199:106,93:106:3771:93:3303:-237.585,0,-279.683	0/1:69:45,24:45:1612:24:841:-55.2353,0,-124.599	0/1:43:33,10:33:1176:10:342:-18.1648,0,-93.2035	0/1:89:55,28:55:1960:28:980:-63.1666,0,-151.331	0/1:84:48,36:48:1720:36:1280:-90.2167,0,-129.799	0/1:73:44,29:44:1572:29:1023:-70.4065,0,-119.796	0/1:68:44,24:44:1572:24:840:-55.4482,0,-121.302	0/1:49:31,18:31:1112:18:616:-41.0054,0,-85.6385	0/1:83:44,39:44:1569:39:1376:-99.1532,0,-116.514	0/1:68:36,32:36:1288:32:1132:-81.7185,0,-95.7535	0/1:56:29,27:29:1032:27:946:-68.5952,0,-76.3358	0/1:55:36,19:36:1264:19:684:-45.3337,0,-97.5031	0/1:52:26,26:26:928:26:901:-65.7484,0,-68.1847	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:21:1,20:1:36:20:701:-59.8135,-2.72336,0	1/1:32:0,32:0:0:32:1132:-102.189,-9.63296,0	1/1:62:0,62:0:0:62:2198:-198.086,-18.6639,0	1/1:119:1,118:1:36:118:4195:-374.135,-32.2243,0	1/1:60:0,60:0:0:60:2100:-189.268,-18.0618,0	0/1:154:109,45:109:3886:45:1577:-95.7734,0,-303.576	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	1/1:35:0,35:0:0:35:1227:-110.733,-10.5361,0	1/1:188:1,187:1:36:187:6614:-591.746,-52.9954,0	1/1:187:2,185:2:72:185:6560:-583.65,-49.4559,0	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	1/1:224:0,224:0:0:224:7896:-710.675,-67.4307,0	0/1:98:53,45:53:1887:45:1590:-113.888,0,-140.607	0/1:93:52,41:52:1850:41:1472:-104.78,0,-138.783	.:.:.:.:.:.:.:.	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:12:3,9:3:108:9:278:-21.7113,0,-6.18351	0/1:137:65,72:65:2327:72:2544:-187.946,0,-168.448	0/1:130:71,59:71:2536:59:2088:-149.057,0,-189.358	0/1:40:22,18:22:777:18:632:-45.1656,0,-58.2092	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:74:0,74:0:0:74:2593:-233.62,-22.2762,0	0/1:28:13,15:13:459:15:528:-39.4225,0,-33.2152	0/1:132:92,40:92:3288:40:1424:-88.7215,0,-256.404	0/1:44:14,30:14:500:30:1051:-81.6543,0,-32.0909	0/1:36:14,22:14:504:22:760:-57.8788,0,-34.861	1/1:58:0,58:0:0:58:2025:-182.519,-17.4597,0	0/1:65:47,18:47:1677:18:614:-36.0125,0,-131.648	0/1:125:74,51:74:2639:51:1769:-121.86,0,-200.128	0/1:81:53,28:53:1876:28:987:-64.7596,0,-144.733	1/1:62:0,62:0:0:62:2197:-197.994,-18.6639,0	0/1:97:60,37:60:2143:37:1296:-87.7384,0,-163.937	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:81:52,29:52:1864:29:1027:-68.3587,0,-143.656	1/1:49:0,49:0:0:49:1729:-155.894,-14.7505,0	0/1:9:6,3:6:216:3:100:-6.62117,0,-17.0812	1/1:119:2,117:2:72:117:4060:-358.759,-28.9858,0	1/1:19:0,19:0:0:19:671:-60.715,-5.71957,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:104:56,48:56:2008:48:1695:-121.527,0,-149.686	1/1:98:1,97:1:36:97:3402:-302.799,-25.9027,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:121:0,121:0:0:121:4285:-385.828,-36.4246,0	1/1:86:0,86:0:0:86:2998:-270.051,-25.8886,0	0/1:55:36,19:36:1284:19:668:-43.889,0,-99.3068	1/1:49:0,49:0:0:49:1707:-153.911,-14.7505,0	1/1:75:1,74:1:36:74:2614:-231.91,-18.979,0	0/1:188:147,41:147:5251:41:1459:-74.9979,0,-416.131	0/1:25:11,14:11:396:14:488:-36.724,0,-28.457	0/1:53:32,21:32:1134:21:740:-50.9688,0,-86.4127	0/1:38:19,19:19:684:19:654:-47.7409,0,-50.4512	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:100:0,98:0:0:98:3409:-306.67,-29.5009,0	0/1:50:40,10:40:1428:10:360:-17.6928,0,-113.766	1/1:82:0,82:0:0:82:2911:-262.17,-24.6845,0	1/1:119:0,118:0:0:118:4177:-375.752,-35.5215,0	0/1:82:56,26:56:2004:26:896:-56.2662,0,-155.949	0/1:52:28,24:28:1008:24:852:-61.3468,0,-75.3828	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:52:1,51:1:36:51:1777:-156.612,-12.0553,0	1/1:69:0,69:0:0:69:2422:-218.047,-20.7711,0	0/1:166:110,56:110:3944:56:1944:-125.263,0,-305.18	1/1:67:0,67:0:0:67:2370:-213.559,-20.169,0	1/1:71:0,71:0:0:71:2503:-225.521,-21.3731,0	0/1:29:10,19:10:360:19:653:-50.3594,0,-24.0144	1/1:96:2,94:2:72:94:3277:-288.314,-22.0622,0	0/1:27:17,10:17:608:10:356:-24.2534,0,-46.9242	0/1:68:35,33:35:1247:33:1159:-84.1458,0,-92.064	0/1:64:27,37:27:952:37:1320:-99.836,0,-66.7293	0/1:28:15,13:15:540:13:457:-33.0338,0,-40.5077	0/1:127:62,65:62:2214:65:2308:-169.751,0,-161.293	0/1:57:30,27:30:1071:27:959:-69.4667,0,-79.5429	1/1:87:1,86:1:36:86:3010:-267.531,-22.5913,0	1/1:69:0,69:0:0:69:2455:-221.205,-20.7711,0
chr03	198306	.	A	C	16602	PASS	AB=0.462533;ABP=30.3464;AC=39;AF=0.207447;AN=188;AO=1042;CIGAR=1X;DP=6181;DPB=6181;DPRA=0.904961;EPP=2265.68;EPPR=11160;GTI=3;LEN=1;MEANALT=1;MQM=59.9923;MQMR=59.9957;NS=94;NUMALT=1;ODDS=0.521661;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37058;QR=183357;RO=5138;RPL=1042;RPP=2265.68;RPPR=11160;RPR=0;RUN=1;SAF=0;SAP=2265.68;SAR=1042;SRF=0;SRP=11160;SRR=5138;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:10,12:10:347:12:432:-32.5985,0,-24.941	0/1:51:23,28:23:824:28:973:-72.5256,0,-59.1308	0/1:114:67,47:67:2385:47:1688:-117.89,0,-180.589	0/0:136:135,0:135:4799:0:0:0,-40.639,-431.704	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9338	0/0:87:87,0:87:3075:0:0:0,-26.1896,-276.976	0/1:78:34,44:34:1224:44:1535:-114.955,0,-86.9867	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.943	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:110:110,0:110:3956:0:0:0,-33.1133,-356.23	0/0:82:82,0:82:2937:0:0:0,-24.6845,-264.562	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:62:62,0:62:2202:0:0:0,-18.6639,-198.442	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:135:135,0:135:4833:0:0:0,-40.639,-435.123	0/0:171:171,0:171:6094:0:0:0,-51.4761,-548.561	0/1:29:12,17:12:432:17:597:-45.3263,0,-30.4913	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.334	0/1:58:39,19:39:1373:19:680:-44.0694,0,-106.407	0/1:38:19,19:19:669:19:684:-50.4512,0,-49.0948	0/1:155:93,62:93:3306:62:2194:-151.063,0,-251.097	0/0:180:180,0:180:6429:0:0:0,-54.1854,-578.697	0/1:25:11,14:11:392:14:500:-37.8104,0,-28.0943	0/1:147:93,54:93:3294:54:1940:-130.625,0,-252.426	0/0:76:75,1:75:2654:1:36:0,-19.28,-235.506	0/0:105:105,0:105:3737:0:0:0,-31.6081,-336.531	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:5:4,1:4:129:1:36:-2.09312,0,-10.4225	0/0:198:198,0:198:7070:0:0:0,-59.6039,-636.359	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/1:46:18,28:18:633:28:1008:-77.189,0,-43.4477	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:86:38,48:38:1364:48:1686:-126.133,0,-97.1721	0/1:29:15,14:15:540:14:489:-35.609,0,-40.2067	0/1:39:30,9:30:1072:9:320:-17.4022,0,-85.0523	0/1:101:60,41:60:2141:41:1442:-99.6678,0,-162.552	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:54:28,26:28:1004:26:936:-68.3038,0,-74.4202	0/1:63:38,25:38:1360:25:900:-62.3561,0,-103.736	0/0:109:109,0:109:3900:0:0:0,-32.8123,-351.194	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:77:38,39:38:1368:39:1385:-101.768,0,-100.242	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:66:33,33:33:1188:33:1184:-87.0003,0,-87.3606	0/0:56:56,0:56:1963:0:0:0,-16.8577,-176.94	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:120:61,59:61:2162:59:2059:-149.453,0,-158.72	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:63:38,25:38:1356:25:885:-61.0016,0,-103.376	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:117:77,40:77:2681:40:1432:-93.9571,0,-206.309	0/0:96:94,2:94:3338:2:72:0,-22.0622,-293.799	0/1:39:25,14:25:900:14:500:-33.596,0,-69.5808	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:146:146,0:146:5134:0:0:0,-43.9504,-462.201	0/1:80:24,56:24:860:56:2012:-157.271,0,-53.6394	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:53:40,13:40:1436:13:449:-24.7829,0,-113.583	0/1:34:14,20:14:504:20:720:-54.8938,0,-35.4631	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:91:91,0:91:3249:0:0:0,-27.3937,-292.63	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/0:93:93,0:93:3287:0:0:0,-27.9958,-296.047	0/0:138:138,0:138:4948:0:0:0,-41.5421,-445.469	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:92:92,0:92:3281:0:0:0,-27.6948,-295.509	0/0:136:136,0:136:4884:0:0:0,-40.9401,-439.711	0/1:57:34,23:34:1212:23:828:-57.6854,0,-92.2276	0/1:70:28,42:28:1004:42:1508:-114.943,0,-69.6038	0/1:38:23,15:23:828:15:540:-37.4974,0,-63.405	0/1:113:44,69:44:1565:69:2454:-187.095,0,-107.123	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.094	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/1:49:30,19:30:1076:19:669:-45.7835,0,-82.4024	0/1:79:40,39:40:1436:39:1385:-101.165,0,-105.756	0/0:123:123,0:123:4377:0:0:0,-37.0267,-394.105	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.49
chr03	272730	.	C	T	88032.4	PASS	AB=0.467684;ABP=23.2202;AC=150;AF=0.797872;AN=188;AO=3919;CIGAR=1X;DP=5113;DPB=5113;DPRA=0;EPP=8513.01;EPPR=2580.56;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.7038;MQMR=59.932;NS=94;NUMALT=1;ODDS=0.284053;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139722;QR=42375;RO=1191;RPL=3788;RPP=7413.19;RPPR=2141.46;RPR=131;RUN=1;SAF=3788;SAP=7413.19;SAR=131;SRF=1138;SRP=2149.37;SRR=53;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:19,9:19:680:9:316:-20.35,0,-53.1003	0/1:43:22,21:22:788:21:748:-54.6617,0,-58.1099	0/1:63:33,30:33:1188:30:1068:-77.459,0,-88.2637	1/1:118:0,118:0:0:118:4220:-379.978,-35.5215,0	1/1:94:0,94:0:0:94:3349:-301.607,-28.2968,0	1/1:43:0,43:0:0:43:1520:-137.084,-12.9443,0	1/1:34:1,33:1:36:33:1184:-103.269,-6.63675,0	0/1:57:29,28:29:1012:28:999:-73.0357,0,-74.2288	1/1:68:0,68:0:0:68:2427:-218.666,-20.47,0	1/1:53:0,53:0:0:53:1896:-170.915,-15.9546,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:104:0,103:0:0:103:3677:-330.742,-31.0061,0	1/1:62:0,62:0:0:62:2215:-199.606,-18.6639,0	1/1:46:0,46:0:0:46:1634:-147.347,-13.8474,0	1/1:43:0,43:0:0:43:1544:-139.162,-12.9443,0	1/1:36:0,36:0:0:36:1264:-114.052,-10.8371,0	1/1:31:0,31:0:0:31:1108:-100.023,-9.33193,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:30:0,30:0:0:30:1072:-96.5776,-9.0309,0	1/1:55:0,55:0:0:55:1968:-177.389,-16.5567,0	1/1:79:0,79:0:0:79:2787:-251.043,-23.7814,0	0/1:58:37,21:37:1332:21:748:-50.1856,0,-102.723	1/1:59:0,59:0:0:59:2099:-189.167,-17.7608,0	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:56:39,17:39:1396:17:612:-38.5558,0,-109.081	0/1:138:70,68:70:2489:68:2423:-176.782,0,-182.72	1/1:115:0,115:0:0:115:4093:-368.496,-34.6185,0	0/1:29:14,15:14:500:15:521:-38.4865,0,-36.6063	0/1:129:64,65:64:2296:65:2325:-170.676,0,-168.068	1/1:75:2,73:2:72:73:2612:-228.174,-15.7405,0	1/1:54:0,54:0:0:54:1932:-172.788,-16.2556,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:157:0,157:0:0:157:5595:-503.668,-47.2617,0	1/1:95:1,94:1:36:94:3352:-298.278,-24.9996,0	0/1:43:23,20:23:824:20:716:-51.8106,0,-61.539	1/1:5:0,5:0:0:5:165:-15.1653,-1.50515,0	0/1:65:23,41:23:812:41:1451:-111.258,0,-53.7751	0/1:33:18,15:18:636:15:540:-39.0016,0,-47.634	0/1:63:22,41:22:780:41:1472:-113.811,0,-51.5581	0/1:49:24,25:24:851:25:880:-64.7672,0,-62.159	1/1:59:0,59:0:0:59:2056:-185.305,-17.7608,0	0/1:74:35,39:35:1213:39:1396:-103.654,0,-87.1921	0/1:77:32,45:32:1130:45:1604:-121.449,0,-78.8276	1/1:83:0,83:0:0:83:2980:-268.427,-24.9855,0	1/1:32:0,32:0:0:32:1131:-102.095,-9.63296,0	0/1:77:31,46:31:1103:46:1656:-126.144,0,-76.3981	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:6:0,6:0:0:6:216:-19.7881,-1.80618,0	0/1:82:43,39:43:1540:39:1381:-99.883,0,-114.209	1/1:33:0,33:0:0:33:1169:-105.513,-9.93399,0	1/1:3:0,3:0:0:3:108:-10.0667,-0.90309,0	0/1:74:37,37:37:1328:37:1320:-96.8165,0,-97.546	1/1:20:0,20:0:0:20:716:-64.7654,-6.0206,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:48:31,17:31:1112:17:599:-39.7887,0,-85.9419	1/1:90:0,90:0:0:90:3204:-288.577,-27.0927,0	1/1:6:0,6:0:0:6:216:-19.7881,-1.80618,0	0/1:81:41,40:41:1455:40:1440:-105.514,0,-106.862	1/1:87:0,87:0:0:87:3128:-281.732,-26.1896,0	0/1:48:21,27:21:752:27:955:-71.8062,0,-53.5568	1/1:39:0,39:0:0:39:1387:-125.121,-11.7402,0	1/1:75:0,75:0:0:75:2677:-241.171,-22.5773,0	0/1:79:61,18:61:2164:18:640:-34.147,0,-170.873	1/1:38:0,37:0:0:37:1324:-119.079,-11.1381,0	0/1:27:15,12:15:540:12:432:-31.0852,0,-40.8087	0/1:41:21,20:21:756:20:708:-51.7017,0,-56.025	1/1:15:0,15:0:0:15:525:-47.5787,-4.51545,0	1/1:60:0,60:0:0:60:2127:-191.689,-18.0618,0	1/1:33:0,33:0:0:33:1180:-106.502,-9.93399,0	1/1:127:1,126:1:36:126:4523:-403.604,-34.6325,0	1/1:91:0,91:0:0:91:3249:-292.629,-27.3937,0	0/1:108:56,52:56:1955:52:1860:-135.134,0,-143.709	1/1:36:0,36:0:0:36:1288:-116.197,-10.8371,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	1/1:42:1,41:1:36:41:1467:-128.727,-9.04499,0	1/1:34:0,34:0:0:34:1215:-109.648,-10.235,0	1/1:77:0,77:0:0:77:2752:-247.907,-23.1793,0	0/1:67:44,23:44:1575:23:819:-53.8602,0,-121.869	0/1:53:24,29:24:839:29:1035:-77.5038,0,-59.8541	0/1:27:15,12:15:517:12:424:-30.3326,0,-38.7268	0/1:146:73,73:73:2602:73:2610:-191.106,0,-190.477	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:37:0,37:0:0:37:1323:-119.326,-11.1381,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:38:27,11:27:951:11:387:-23.7267,0,-74.4652	0/1:129:78,51:78:2791:51:1806:-123.959,0,-212.597	0/1:53:40,13:40:1424:13:468:-26.5051,0,-112.503	1/1:51:0,51:0:0:51:1785:-160.908,-15.3525,0	1/1:72:0,72:0:0:72:2556:-230.284,-21.6742,0
chr03	499493	.	A	C	79989.4	PASS	AB=0.486041;ABP=7.01154;AC=149;AF=0.801075;AN=186;AO=4817;CIGAR=1X;DP=6045;DPB=6045;DPRA=0;EPP=10463;EPPR=2654.38;GTI=2;LEN=1;MEANALT=1.07527;MQM=31.9576;MQMR=58.1147;NS=93;NUMALT=1;ODDS=0.264457;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171632;QR=43632;RO=1221;RPL=4817;RPP=10463;RPPR=2654.38;RPR=0;RUN=1;SAF=0;SAP=10463;SAR=4817;SRF=0;SRP=2654.38;SRR=1221;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:18,42:18:644:42:1489:-99.0743,0,-39.9964	0/1:33:15,18:15:540:18:644:-40.4698,0,-38.9666	0/1:92:35,57:35:1260:57:2037:-131.079,0,-86.0103	1/1:126:1,124:1:32:124:4425:-334.213,-34.741,0	1/1:50:0,50:0:0:50:1796:-138.871,-15.0515,0	1/1:52:0,52:0:0:52:1853:-145.392,-15.6536,0	1/1:98:0,98:0:0:98:3467:-264.436,-29.5009,0	0/1:83:37,46:37:1328:46:1656:-104.884,0,-94.8367	1/1:95:0,95:0:0:95:3397:-265.902,-28.5979,0	1/1:61:0,61:0:0:61:2173:-165.695,-18.3628,0	1/1:19:0,19:0:0:19:665:-50.7685,-5.71957,0	1/1:79:0,79:0:0:79:2828:-218.498,-23.7814,0	1/1:73:0,73:0:0:73:2608:-200.791,-21.9752,0	1/1:46:0,46:0:0:46:1656:-125.578,-13.8474,0	1/1:68:0,68:0:0:68:2429:-184.61,-20.47,0	1/1:48:0,48:0:0:48:1715:-131.694,-14.4494,0	1/1:31:0,31:0:0:31:1101:-86.5135,-9.33193,0	1/1:36:0,36:0:0:36:1277:-98.7113,-10.8371,0	1/1:11:0,11:0:0:11:396:-31.2364,-3.31133,0	1/1:74:0,74:0:0:74:2645:-197.308,-22.2762,0	1/1:109:0,109:0:0:109:3867:-295.194,-32.8123,0	0/1:97:78,18:78:2757:18:644:-17.8063,0,-218.776	1/1:79:0,79:0:0:79:2836:-214.955,-23.7814,0	0/1:69:24,45:24:849:45:1620:-102.545,0,-55.9525	0/1:90:32,58:32:1152:58:2035:-129.346,0,-76.7573	0/1:176:124,52:124:4445:52:1842:-88.5477,0,-346.011	1/1:162:1,160:1:36:160:5672:-429.85,-45.2002,0	0/1:17:6,11:6:216:11:396:-25.4279,0,-14.5818	0/1:203:113,90:113:4037:90:3183:-181.779,0,-301.835	1/1:76:2,74:2:72:74:2649:-194.308,-16.0416,0	1/1:54:0,54:0:0:54:1944:-148.056,-16.2556,0	0/1:4:1,3:1:36:3:108:-7.34859,0,-2.39415	1/1:9:0,9:0:0:9:305:-24.0688,-2.70927,0	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:212:-16.8134,-1.80618,0	0/1:6:1,5:1:36:5:180:-12.5626,0,-1.79209	1/1:166:0,166:0:0:166:5938:-450.055,-49.971,0	1/1:143:0,143:0:0:143:5114:-387.698,-43.0473,0	0/1:21:9,12:9:324:12:432:-27.3741,0,-23.1842	1/1:4:0,4:0:0:4:144:-11.3657,-1.20412,0	0/1:74:29,45:29:1044:45:1586:-99.2915,0,-71.949	0/1:13:2,11:2:72:11:396:-25.7889,0,-2.92333	0/1:94:50,44:50:1785:44:1576:-92.5522,0,-132.409	0/1:38:25,13:25:885:13:468:-21.9686,0,-68.5181	1/1:63:0,63:0:0:63:2221:-169.581,-18.9649,0	0/1:102:41,61:41:1460:61:2169:-132.026,0,-100.875	0/1:60:21,39:21:752:39:1395:-91.4816,0,-49.9264	1/1:147:0,147:0:0:147:5239:-395.53,-44.2514,0	1/1:55:0,55:0:0:55:1976:-149.595,-16.5567,0	0/1:46:24,22:24:845:22:788:-46.7973,0,-61.8828	1/1:150:0,150:0:0:150:5343:-407.646,-45.1545,0	1/1:2:0,2:0:0:2:72:-5.80362,-0.60206,0	0/1:64:27,37:27:972:37:1313:-83.1422,0,-68.532	1/1:60:0,60:0:0:60:2160:-164.142,-18.0618,0	1/1:6:0,6:0:0:6:216:-17.18,-1.80618,0	0/1:63:32,31:32:1144:31:1112:-65.6099,0,-84.1923	1/1:46:0,46:0:0:46:1641:-123.771,-13.8474,0	0/1:9:1,8:1:36:8:288:-19.5889,0,-0.887999	1/1:13:1,12:1:36:12:413:-28.659,-0.316121,0	0/1:38:23,15:23:824:15:540:-30.1652,0,-63.0442	1/1:78:0,78:0:0:78:2766:-210.302,-23.4803,0	1/1:2:0,2:0:0:2:72:-5.80362,-0.60206,0	0/1:75:37,38:37:1320:38:1338:-80.4107,0,-96.4913	1/1:148:0,148:0:0:148:5320:-402.326,-44.5524,0	0/1:62:33,29:33:1173:29:1029:-59.5984,0,-87.0769	1/1:62:0,61:0:0:61:2150:-162.535,-18.3628,0	1/1:108:0,108:0:0:108:3857:-294.971,-32.5112,0	0/1:105:65,40:65:2317:40:1436:-78.0513,0,-177.066	1/1:6:0,6:0:0:6:216:-16.8,-1.80618,0	0/1:50:20,30:20:720:30:1080:-69.5991,0,-49.8491	0/1:55:29,25:29:1044:25:881:-50.7523,0,-76.8369	1/1:12:0,12:0:0:12:432:-33.2945,-3.61236,0	1/1:160:0,160:0:0:160:5672:-440.53,-48.1648,0	1/1:46:0,46:0:0:46:1614:-126.463,-13.8474,0	1/1:69:0,69:0:0:69:2461:-185.675,-20.7711,0	1/1:71:0,71:0:0:71:2517:-193.522,-21.3731,0	0/1:65:42,23:42:1508:23:794:-43.0877,0,-116.388	1/1:57:3,54:3:104:54:1902:-140.045,-7.4559,0	1/1:4:0,4:0:0:4:144:-11.5575,-1.20412,0	1/1:62:0,62:0:0:62:2213:-169.39,-18.6639,0	1/1:48:1,47:1:21:47:1673:-128.834,-12.3508,0	1/1:171:0,170:0:0:170:6037:-455.871,-51.1751,0	0/1:62:36,26:36:1296:26:936:-53.5643,0,-98.104	0/1:43:20,23:20:720:23:828:-48.4872,0,-52.1326	0/1:43:26,17:26:927:17:612:-33.9581,0,-70.7653	0/1:129:66,63:66:2351:63:2234:-131.634,0,-172.816	1/1:29:0,29:0:0:29:1044:-81.1753,-8.72987,0	1/1:69:0,69:0:0:69:2461:-190.586,-20.7711,0	1/1:69:0,69:0:0:69:2449:-189.884,-20.7711,0	0/1:17:7,10:7:252:10:356:-22.5373,0,-17.8887	0/1:42:24,18:24:864:18:644:-37.005,0,-65.3704	0/1:63:39,24:39:1396:24:860:-47.178,0,-106.948	1/1:6:0,6:0:0:6:201:-15.6506,-1.80618,0	1/1:87:0,87:0:0:87:3113:-236.907,-26.1896,0
chr03	511113	.	A	G	125975	PASS	AB=0.540577;ABP=45.6562;AC=148;AF=0.787234;AN=188;AO=5900;CIGAR=1X;DP=7288;DPB=7288;DPRA=0;EPP=12814.7;EPPR=2993.13;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.9971;MQMR=60;NS=94;NUMALT=1;ODDS=2.78812;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210050;QR=49275;RO=1381;RPL=5899;RPP=12806;RPPR=2993.13;RPR=1;RUN=1;SAF=5899;SAP=12806;SAR=1;SRF=1381;SRP=3001.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:23,18:23:820:18:639:-45.496,0,-61.7803	0/1:108:36,72:36:1292:72:2550:-197.237,0,-84.0725	0/1:73:25,48:25:900:48:1716:-132.75,0,-59.3458	1/1:111:0,110:0:0:110:3914:-352.23,-33.1133,0	1/1:64:1,63:1:36:63:2227:-197.094,-15.6676,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:90:0,90:0:0:90:3201:-288.31,-27.0927,0	0/1:136:63,72:63:2240:72:2527:-186.828,0,-161.013	1/1:71:2,69:2:72:69:2460:-214.818,-14.5364,0	1/1:101:0,101:0:0:101:3616:-325.646,-30.404,0	1/1:84:0,83:0:0:83:2947:-265.105,-24.9855,0	1/1:64:0,64:0:0:64:2266:-204.202,-19.2659,0	1/1:61:0,61:0:0:61:2169:-195.475,-18.3628,0	1/1:76:0,76:0:0:76:2702:-243.424,-22.8783,0	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	1/1:71:0,71:0:0:71:2520:-227.053,-21.3731,0	1/1:69:0,69:0:0:69:2459:-221.562,-20.7711,0	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:44:2,42:2:72:42:1490:-127.556,-6.4086,0	1/1:172:0,172:0:0:172:6153:-553.867,-51.7772,0	1/1:150:0,150:0:0:150:5340:-480.736,-45.1545,0	0/1:101:66,35:66:2338:35:1247:-82.13,0,-180.272	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:109:44,65:44:1572:65:2302:-174.626,0,-108.959	0/1:66:32,34:32:1148:34:1220:-90.2388,0,-83.7619	0/1:267:126,140:126:4505:140:5015:-371.062,0,-325.183	1/1:190:0,190:0:0:190:6771:-609.463,-57.1957,0	0/1:22:11,11:11:396:11:373:-27.2726,0,-29.3601	0/1:201:106,95:106:3808:95:3394:-245.168,0,-282.409	1/1:97:5,92:5:180:92:3268:-277.788,-12.6478,0	1/1:89:0,89:0:0:89:3163:-284.897,-26.7917,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:208:-19.0585,-1.80618,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:139:0,139:0:0:139:4978:-448.167,-41.8432,0	1/1:175:0,175:0:0:175:6240:-561.695,-52.6803,0	0/1:67:26,41:26:911:41:1436:-109.364,0,-62.136	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:108:66,42:66:2364:42:1495:-102.333,0,-180.507	0/1:45:15,30:15:528:30:1072:-83.2461,0,-34.305	0/1:116:61,54:61:2180:54:1928:-138.956,0,-161.626	0/1:39:17,22:17:597:22:776:-58.422,0,-42.316	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	0/1:86:45,41:45:1616:41:1472:-106.888,0,-119.841	0/1:91:44,47:44:1561:47:1668:-123.012,0,-113.386	1/1:161:0,161:0:0:161:5707:-513.748,-48.4658,0	1/1:72:0,72:0:0:72:2567:-231.28,-21.6742,0	0/1:79:24,55:24:860:55:1968:-153.614,0,-53.9405	1/1:174:0,174:0:0:174:6197:-557.825,-52.3792,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:102:38,63:38:1344:63:2239:-171.007,0,-90.4964	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:91:43,48:43:1532:48:1724:-128.052,0,-110.779	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:19:4,15:4:144:15:515:-40.9531,0,-7.59405	0/1:66:36,30:36:1281:30:1072:-76.9245,0,-95.7233	1/1:117:0,117:0:0:117:4174:-375.842,-35.2205,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:109:50,59:50:1800:59:2105:-156.907,0,-129.47	1/1:160:0,160:0:0:160:5685:-511.767,-48.1648,0	0/1:86:42,44:42:1508:44:1573:-115.973,0,-110.126	1/1:58:1,57:1:36:57:2024:-178.833,-13.8615,0	1/1:152:1,151:1:36:151:5335:-476.687,-42.1583,0	0/1:74:37,37:37:1305:37:1313:-96.1935,0,-95.4732	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:68:39,29:39:1400:29:1044:-73.8048,0,-105.829	0/1:87:32,55:32:1139:55:1932:-147.963,0,-76.6288	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:122:0,122:0:0:122:4330:-389.876,-36.7257,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:118:0,118:0:0:118:4184:-376.743,-35.5215,0	1/1:97:0,97:0:0:97:3471:-312.601,-29.1999,0	0/1:83:30,53:30:1061:53:1883:-144.761,0,-70.8139	1/1:88:3,85:3:108:85:3044:-264.115,-16.4155,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:83:1,82:1:36:82:2926:-259.976,-21.3872,0	1/1:63:0,63:0:0:63:2245:-202.312,-18.9649,0	1/1:171:0,171:0:0:171:6089:-548.113,-51.4761,0	0/1:75:42,33:42:1500:33:1176:-83.5705,0,-112.717	0/1:35:14,21:14:496:21:756:-57.8312,0,-34.4382	0/1:31:23,8:23:828:8:288:-16.9355,0,-65.5122	0/1:77:27,49:27:945:49:1746:-134.332,0,-62.269	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	1/1:71:0,71:0:0:71:2523:-227.322,-21.3731,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:45:14,31:14:496:31:1116:-87.2053,0,-31.4279	0/1:105:29,76:29:1040:76:2678:-209.657,0,-62.3062	0/1:34:17,17:17:600:17:608:-44.817,0,-44.0942	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	1/1:68:0,68:0:0:68:2392:-215.535,-20.47,0
chr03	511282	.	T	C	20574	PASS	AB=0.526019;ABP=16.5702;AC=43;AF=0.228723;AN=188;AO=1229;CIGAR=1X;DP=5272;DPB=5272;DPRA=1.05615;EPP=2663.07;EPPR=8738.84;GTI=2;LEN=1;MEANALT=1.14583;MQM=59.9976;MQMR=59.9965;NS=94;NUMALT=1;ODDS=1.56858;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43784;QR=142885;RO=4023;RPL=1229;RPP=2671.75;RPPR=8609.04;RPR=0;RUN=1;SAF=1;SAP=2663.07;SAR=1228;SRF=15;SRP=8609.04;SRR=4008;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:21,16:21:748:16:561:-39.679,0,-56.5072	0/1:64:30,34:30:1076:34:1216:-90.4806,0,-77.8869	0/1:63:31,32:31:1112:32:1136:-83.584,0,-81.4265	0/0:123:123,0:123:4393:0:0:0,-37.0267,-395.542	0/0:45:44,1:44:1580:1:36:0,-9.94807,-138.893	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:63:28,34:28:970:34:1208:-90.0025,0,-68.5845	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.4	0/0:58:57,0:57:2025:0:0:0,-17.1587,-182.308	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:63:61,0:61:2132:0:0:0,-18.3628,-191.782	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:34:33,1:33:1188:1:36:0,-6.63674,-103.63	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.897	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/0:105:105,0:105:3745:0:0:0,-31.6081,-337.25	0/0:54:53,1:53:1872:1:21:0,-14.1557,-166.656	0/1:90:30,60:30:1050:60:2141:-165.863,0,-67.7136	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:78:43,35:43:1517:35:1252:-89.5047,0,-113.341	0/1:60:27,33:27:938:33:1154:-86.1004,0,-66.6675	0/1:161:82,77:82:2917:77:2741:-198.708,0,-214.541	0/0:105:105,0:105:3737:0:0:0,-31.6081,-336.531	0/1:24:14,10:14:492:10:352:-24.7935,0,-37.3876	0/1:142:58,84:58:2080:84:3008:-228.205,0,-144.724	0/1:51:45,5:45:1604:5:180:-1.14074,0,-129.239	0/0:63:63,0:63:2218:0:0:0,-18.9649,-199.882	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:140:138,0:138:4917:0:0:0,-41.5421,-442.322	0/0:111:110,0:110:3884:0:0:0,-33.1133,-349.392	0/1:45:16,29:16:572:29:1036:-80.0076,0,-38.2671	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:136:46,90:46:1648:90:3191:-246.47,0,-107.668	0/1:56:23,33:23:680:33:1188:-90.3709,0,-44.618	0/1:68:38,30:38:1330:30:1076:-76.6828,0,-99.5257	0/1:55:29,25:29:1017:25:888:-63.6238,0,-75.2247	0/0:31:29,0:29:1029:0:0:0,-8.72987,-92.5616	0/1:77:43,34:43:1544:34:1201:-85.2152,0,-116.074	0/1:36:19,17:19:668:17:604:-43.8535,0,-49.6086	0/0:96:96,0:96:3406:0:0:0,-28.8989,-306.753	0/0:69:68,0:68:2409:0:0:0,-20.47,-216.706	0/1:60:28,32:28:989:32:1137:-84.5752,0,-71.2602	0/0:116:115,0:115:4082:0:0:0,-34.6184,-367.246	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:86:50,36:50:1758:36:1288:-90.335,0,-132.611	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3731	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:76:34,41:34:1194:41:1446:-107.495,0,-84.8244	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:38:12,26:12:432:26:926:-72.2178,0,-27.7821	0/0:91:89,1:89:3196:1:36:0,-23.8543,-284.264	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:123:71,52:71:2532:52:1868:-131.373,0,-191.105	0/0:83:82,1:82:2920:1:36:0,-21.3872,-259.438	0/1:42:12,30:12:432:30:1076:-84.5096,0,-26.5779	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:85:81,4:81:2904:4:144:0,-12.2739,-248.282	0/1:29:5,24:5:176:24:860:-68.992,0,-7.45515	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:33:7,26:7:244:26:917:-72.9106,0,-12.3654	0/1:66:42,24:42:1508:24:856:-57.4931,0,-116.146	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.9	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:85:85,0:85:3022:0:0:0,-25.5875,-272.208	0/1:67:36,31:36:1265:31:1116:-80.5827,0,-93.9816	0/0:60:59,1:59:2057:1:36:0,-14.4635,-181.8	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:69:69,0:69:2423:0:0:0,-20.7711,-218.322	0/0:61:60,0:60:2061:0:0:0,-18.0618,-185.394	0/0:151:151,0:151:5393:0:0:0,-45.4555,-485.501	0/1:86:41,45:41:1456:45:1616:-119.841,0,-105.447	0/1:20:10,10:10:356:10:345:-25.3602,0,-26.3606	0/1:36:14,21:14:504:21:752:-57.1105,0,-34.8022	0/1:98:55,43:55:1957:43:1521:-107.68,0,-146.903	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/1:39:20,19:20:716:19:676:-49.4278,0,-53.0275	0/1:61:12,49:12:432:49:1758:-140.141,0,-20.8584	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:65:64,0:64:2285:0:0:0,-19.2659,-205.55
chr03	533830	.	C	A	19306	PASS	AB=0.539461;ABP=31.1161;AC=40;AF=0.212766;AN=188;AO=1129;CIGAR=1X;DP=4938;DPB=4938;DPRA=1.08223;EPP=2454.6;EPPR=8269.81;GTI=1;LEN=1;MEANALT=1;MQM=59.8716;MQMR=59.834;NS=94;NUMALT=1;ODDS=1.22459;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40488;QR=136032;RO=3807;RPL=0;RPP=2454.6;RPPR=8269.81;RPR=1129;RUN=1;SAF=0;SAP=2454.6;SAR=1129;SRF=0;SRP=8269.81;SRR=3807;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:9,17:9:324:17:612:-47.5867,0,-21.6775	0/1:38:19,19:19:680:19:684:-50.4512,0,-50.09	0/1:77:38,39:38:1368:39:1400:-103.12,0,-100.242	0/0:128:128,0:128:4532:0:0:0,-38.5318,-407.991	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1277	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.911	0/1:63:25,38:25:900:38:1368:-104.456,0,-62.3561	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.707	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.454	0/0:33:31,0:31:1103:0:0:0,-9.33193,-99.2202	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.024	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.007	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.074	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.129	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4358	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1465	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:210:210,0:210:7512:0:0:0,-63.2163,-675.995	0/0:59:59,0:59:2115:0:0:0,-17.7608,-190.618	0/1:72:26,46:26:906:46:1644:-126.574,0,-60.1768	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.678	0/1:47:28,19:28:993:19:684:-47.7419,0,-75.534	0/1:32:17,15:17:608:15:540:-39.3036,0,-45.4191	0/1:140:70,70:70:2497:70:2513:-183.65,0,-182.829	0/0:129:129,0:129:4593:0:0:0,-38.8329,-413.514	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/1:180:90,90:90:3217:90:3236:-237.275,0,-235.562	0/0:109:108,1:108:3847:1:36:0,-29.214,-342.826	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70217	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0736	0/1:12:7,5:7:252:5:172:-12.2023,0,-19.4166	0/0:83:83,0:83:2957:0:0:0,-24.9855,-266.36	0/0:105:105,0:105:3734:0:0:0,-31.6081,-336.252	0/1:28:18,10:18:648:10:360:-24.3155,0,-50.223	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:113:55,58:55:1960:58:2084:-153.814,0,-142.657	0/1:22:11,11:11:388:11:396:-29.3601,0,-28.6347	0/1:49:25,24:25:872:24:860:-61.9484,0,-64.0264	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:57:27,30:27:968:30:1080:-80.3545,0,-70.2783	0/1:67:30,37:30:1080:37:1332:-100.005,0,-77.3427	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.505	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.547	0/1:61:38,23:38:1353:23:824:-56.1205,0,-103.706	0/0:71:70,1:70:2516:1:36:0,-17.7749,-223.091	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5054	0/1:117:55,62:55:1976:62:2232:-165.923,0,-142.891	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5123	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:68:27,41:27:957:41:1476:-112.666,0,-65.9729	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.8998	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:60:18,42:18:648:42:1499:-117.142,0,-40.5901	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.891	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:128:59,69:59:2105:69:2459:-182.998,0,-151.185	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.598	0/1:43:22,21:22:788:21:726:-52.7117,0,-58.3005	0/0:45:45,0:45:1620:0:0:0,-13.5463,-144.813	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.01	0/1:133:47,86:47:1688:86:3087:-238.019,0,-112.159	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:36:18,18:18:644:18:648:-47.8148,0,-47.4535	0/1:40:19,21:19:680:21:752:-55.9651,0,-49.488	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.5891	0/0:135:135,0:135:4809:0:0:0,-40.639,-432.72	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.565	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.203	0/0:115:115,0:115:4113:0:0:0,-34.6184,-369.651	0/1:48:19,29:19:684:29:1044:-79.8254,0,-47.4393	0/0:59:56,3:56:2016:3:108:0,-7.6856,-171.636	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:37:36,1:36:1277:1:36:0,-7.53983,-111.633	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.699	0/0:93:93,0:93:3329:0:0:0,-27.9958,-299.451	0/1:41:12,29:12:432:29:1044:-81.9322,0,-26.879	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2127	0/1:13:7,6:7:243:6:216:-15.8771,0,-18.2941	0/1:52:20,32:20:716:32:1140:-87.2556,0,-49.1142	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6743	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.91	0/1:31:16,15:16:576:15:536:-39.2429,0,-42.8431	0/1:64:28,36:28:993:36:1292:-97.3086,0,-70.4165	0/1:32:10,22:10:360:22:792:-61.9727,0,-23.1113	0/0:120:120,0:120:4286:0:0:0,-36.1236,-385.895	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.268
chr03	533835	.	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chr03	560738	.	G	A	38728.7	PASS	AB=0.502885;ABP=3.32352;AC=41;AF=0.218085;AN=188;AO=2190;CIGAR=1X;DP=10895;DPB=10895;DPRA=1.09309;EPP=4409.08;EPPR=17426;GTI=1;LEN=1;MEANALT=1.04444;MQM=59.7288;MQMR=59.855;NS=94;NUMALT=1;ODDS=9.0769;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78303;QR=311033;RO=8698;RPL=2186;RPP=4723.85;RPPR=18691.2;RPR=4;RUN=1;SAF=37;SAP=4442.59;SAR=2153;SRF=149;SRP=17618.4;SRR=8549;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:24,15:24:843:15:536:-36.8337,0,-64.4478	0/1:87:40,47:40:1432:47:1684:-125.657,0,-102.988	0/1:130:59,71:59:2099:71:2548:-190.436,0,-150.045	0/0:260:257,1:257:9191:1:36:0,-74.4273,-823.564	0/0:84:84,0:84:2988:0:0:0,-25.2865,-268.078	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:205:205,0:205:7359:0:0:0,-61.7111,-662.355	0/1:175:94,81:94:3359:81:2895:-208.105,0,-249.618	0/0:116:115,0:115:4118:0:0:0,-34.6184,-370.443	0/0:126:126,0:126:4528:0:0:0,-37.9298,-407.672	0/0:130:130,0:130:4634:0:0:0,-39.1339,-417.221	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.702	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:150:150,0:150:5360:0:0:0,-45.1545,-482.216	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:121:120,0:120:4303:0:0:0,-36.1236,-387.12	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:220:220,0:220:7834:0:0:0,-66.2266,-705.078	0/0:154:153,0:153:5461:0:0:0,-46.0576,-491.254	0/1:94:30,64:30:1076:64:2277:-176.788,0,-68.8542	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.674	0/1:73:31,42:31:1112:42:1508:-113.759,0,-78.3891	0/1:96:49,47:49:1726:47:1673:-121.856,0,-126.691	0/1:296:130,166:130:4630:166:5943:-445.529,0,-327.656	0/0:272:272,0:272:9737:0:0:0,-81.8802,-876.258	0/1:31:17,14:17:608:14:500:-36.0042,0,-45.7201	0/1:391:198,193:198:7083:193:6860:-499.769,0,-519.827	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/0:174:174,0:174:6223:0:0:0,-52.3792,-560.159	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9098	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:221:221,0:221:7893:0:0:0,-66.5276,-710.396	0/0:232:230,2:230:8201:2:56:0,-64.76,-732.991	0/1:75:34,41:34:1216:41:1467:-109.748,0,-87.1693	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:220:124,96:124:4430:96:3448:-244.078,0,-332.644	0/1:47:28,19:28:995:19:680:-47.3808,0,-75.7156	0/1:138:68,70:68:2423:70:2497:-183.341,0,-176.738	0/1:75:35,40:35:1260:40:1440:-107.32,0,-91.1282	0/0:69:69,0:69:2451:0:0:0,-20.7711,-220.845	0/1:116:67,49:67:2383:49:1748:-122.65,0,-179.805	0/1:115:48,67:48:1720:67:2408:-182.358,0,-120.467	0/0:222:222,0:222:7959:0:0:0,-66.8287,-716.289	0/0:157:156,1:156:5547:1:36:0,-43.6634,-495.753	0/1:160:81,79:81:2904:79:2810:-204.965,0,-213.431	0/0:115:115,0:115:4105:0:0:0,-34.6184,-369.632	0/0:19:18,0:18:644:0:0:0,-5.41854,-57.9309	0/1:160:87,73:87:3107:73:2605:-186.527,0,-231.692	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.352	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:171:89,82:89:3156:82:2944:-213.717,0,-232.779	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.548	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:76:43,32:43:1544:32:1137:-79.6681,0,-116.311	0/0:201:199,2:199:7104:2:72:0,-53.6703,-632.582	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09053	0/1:213:107,106:107:3835:106:3781:-276.369,0,-281.226	0/0:177:177,0:177:6338:0:0:0,-53.2823,-570.428	0/1:126:69,57:69:2472:57:2025:-144.591,0,-184.804	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.75	0/0:211:211,0:211:7551:0:0:0,-63.5173,-678.609	0/1:62:15,47:15:540:47:1677:-132.539,0,-30.2727	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/1:109:54,55:54:1932:55:1976:-145.302,0,-141.322	0/1:135:69,66:69:2472:66:2364:-172.214,0,-182.095	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.8416	0/0:189:189,0:189:6766:0:0:0,-56.8947,-608.821	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/0:192:192,0:192:6870:0:0:0,-57.7978,-617.841	0/0:186:186,0:186:6660:0:0:0,-55.9916,-599.391	0/1:78:38,40:38:1360:40:1428:-105.337,0,-99.2203	0/0:169:169,0:169:6055:0:0:0,-50.8741,-544.824	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:152:152,0:152:5447:0:0:0,-45.7566,-490.345	0/0:166:166,0:166:5956:0:0:0,-49.971,-536.146	0/0:271:270,1:270:9647:1:36:0,-77.9809,-864.581	0/1:148:79,69:79:2836:69:2480:-178.901,0,-210.926	0/1:94:44,50:44:1572:50:1796:-133.626,0,-113.475	0/1:75:27,48:27:960:48:1716:-132.148,0,-64.139	0/1:124:70,54:70:2504:54:1934:-137.009,0,-188.285	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.102	0/0:93:93,0:93:3314:0:0:0,-27.9958,-298.476	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.53	0/1:84:42,42:42:1512:42:1508:-110.728,0,-111.088	0/1:223:116,107:116:4147:107:3843:-278.887,0,-306.284	0/1:53:27,26:27:972:26:927:-67.7928,0,-71.8433	0/0:142:142,0:142:5083:0:0:0,-42.7463,-457.386	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.941
chr03	619515	.	C	T	23230.8	PASS	AB=0.524798;ABP=16.9032;AC=39;AF=0.209677;AN=186;AO=1373;CIGAR=1X;DP=6247;DPB=6247;DPRA=1.1145;EPP=2967.1;EPPR=10526.1;GTI=1;LEN=1;MEANALT=1;MQM=59.9243;MQMR=59.96;NS=93;NUMALT=1;ODDS=1.70993;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48852;QR=173392;RO=4874;RPL=3;RPP=2958.44;RPPR=10526.1;RPR=1370;RUN=1;SAF=1;SAP=2975.76;SAR=1372;SRF=0;SRP=10586.8;SRR=4874;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:6,12:6:212:12:428:-33.4403,0,-14.0063	0/1:64:35,29:35:1256:29:1032:-73.9194,0,-94.0794	0/1:131:58,73:58:2069:73:2562:-191.334,0,-147.036	0/0:161:161,0:161:5706:0:0:0,-48.4658,-513.659	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9546	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/1:55:27,28:27:956:28:996:-73.3982,0,-69.7991	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.878	0/0:86:86,0:86:3049:0:0:0,-25.8886,-274.64	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:32:32,0:32:1125:0:0:0,-9.63296,-101.556	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.911	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/0:20:20,0:20:697:0:0:0,-6.0206,-63.0507	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:96:96,0:96:3410:0:0:0,-28.8989,-306.983	0/1:46:19,27:19:684:27:964:-73.2294,0,-48.0429	0/0:85:85,0:85:3006:0:0:0,-25.5875,-270.77	0/1:54:33,21:33:1164:21:752:-51.7506,0,-88.8113	0/1:41:19,22:19:684:22:774:-57.6385,0,-49.5481	0/1:176:75,101:75:2680:101:3612:-272.305,0,-188.464	0/0:132:132,0:132:4658:0:0:0,-39.736,-419.256	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:132:45,87:45:1588:87:3120:-241.289,0,-103.472	0/0:110:107,3:107:3821:3:108:0,-23.0381,-334.011	0/0:116:116,0:116:4114:0:0:0,-34.9195,-370.443	0/0:3:3,0:3:89:0:0:0,-0.90309,-8.30436	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:170:170,0:170:6077:0:0:0,-51.1751,-547.031	0/0:106:106,0:106:3770:0:0:0,-31.9092,-339.486	0/1:39:15,24:15:536:24:848:-64.8995,0,-36.8346	.:.:.:.:.:.:.:.	0/1:176:80,96:80:2860:96:3420:-255.034,0,-204.648	0/1:26:16,10:16:572:10:360:-24.9175,0,-43.9866	0/1:130:59,71:59:2090:71:2512:-187.197,0,-149.227	0/1:45:25,20:25:896:20:712:-50.8603,0,-67.414	0/0:41:41,0:41:1419:0:0:0,-12.3422,-128.005	0/1:73:42,31:42:1480:31:1104:-77.6954,0,-111.515	0/1:71:31,40:31:1112:40:1420:-106.724,0,-79.0182	0/0:90:90,0:90:3173:0:0:0,-27.0927,-285.794	0/0:73:72,1:72:2584:1:36:0,-18.3769,-229.211	0/1:55:23,32:23:828:32:1126:-84.5981,0,-58.2875	0/0:75:74,1:74:2618:1:32:0,-19.3779,-232.666	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:151:76,75:76:2720:75:2668:-194.903,0,-199.588	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:135:76,59:76:2680:59:2104:-148.99,0,-200.803	0/0:31:31,0:31:1096:0:0:0,-9.33193,-98.9499	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/1:51:28,23:28:996:23:820:-58.77,0,-74.6024	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.82	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:196:99,97:99:3544:97:3468:-253.322,0,-260.167	0/0:96:95,1:95:3408:1:36:0,-25.3006,-303.336	0/1:30:15,15:15:536:15:531:-39.091,0,-39.5439	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.924	0/0:120:119,1:119:4237:1:36:0,-32.5253,-377.539	0/1:104:34,70:34:1215:70:2508:-194.665,0,-78.3486	0/0:32:32,0:32:1127:0:0:0,-9.63296,-101.737	0/1:48:20,28:20:712:28:988:-74.7845,0,-49.9572	0/1:33:21,12:21:739:12:428:-28.9071,0,-56.8984	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.097	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.887	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.02	0/0:166:166,0:166:5916:0:0:0,-49.971,-532.55	0/1:91:32,59:32:1144:59:2093:-161.244,0,-75.8758	0/0:63:63,0:63:2222:0:0:0,-18.9649,-200.233	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/0:76:76,0:76:2723:0:0:0,-22.8783,-245.312	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:211:211,0:211:7525:0:0:0,-63.5173,-677.291	0/1:55:28,27:28:1000:27:960:-70.1596,0,-73.7564	0/1:44:25,19:25:896:19:668:-47.2005,0,-67.715	0/1:37:16,21:16:572:21:756:-57.2291,0,-40.6753	0/1:86:42,44:42:1488:44:1543:-113.271,0,-108.326	0/0:23:23,0:23:807:0:0:0,-6.92369,-72.9492	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.354	0/0:78:78,0:78:2758:0:0:0,-23.4803,-248.463	0/1:25:15,10:15:527:10:356:-24.8555,0,-40.2344	0/1:60:38,22:38:1351:22:779:-52.3709,0,-103.828	0/1:58:21,37:21:752:37:1328:-102.362,0,-50.5465	0/0:117:116,1:116:4098:1:36:0,-31.6222,-365.406	0/0:82:82,0:82:2916:0:0:0,-24.6845,-262.674
chr03	619614	.	CGAC	TGAT,TGAC	285826	PASS	AB=0.481528,0.511982;ABP=14.8835,8.00588;AC=146,40;AF=0.784946,0.215054;AN=186;AO=8357,2069;CIGAR=1X2M1X,1X3M;DP=10479;DPB=10482.2;DPRA=0,0.962023;EPP=18150,4495.79;EPPR=11.6962;GTI=1;LEN=4,1;MEANALT=2.01075,2.48077;MQM=59.4952,59.9903;MQMR=60;NS=93;NUMALT=2;ODDS=2.83544;PAIRED=0,0;PAIREDR=0;PAO=7,6;PQA=243.5,207.5;PQR=0;PRO=0;QA=293504,73920;QR=131;RO=4;RPL=3994,1022;RPP=38.3902,3.66625;RPPR=5.18177;RPR=4363,1047;RUN=1,1;SAF=3994,1022;SAP=38.3902,3.66625;SAR=4363,1047;SRF=1;SRP=5.18177;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,13,14:0:0:13,14:462,504:-79.1295,-41.4837,-37.5703,-38.0032,0,-33.7888	1/2:86:0,51,35:0:0:51,35:1804,1252:-249.381,-102.449,-87.0965,-147.288,0,-136.752	1/2:176:0,86,88:0:0:86,88:3009,3134:-500.139,-255.466,-229.577,-244.705,0,-218.214	1/1:325:0,324,0:0:0:324,0:11296,0:-1016.01,-97.5337,0,-1016.01,-97.5337,-1016.01	1/1:46:0,45,1:0:0:45,1:1595,36:-143.47,-13.5464,0,-140.533,-10.2491,-140.232	1/1:49:0,49,0:0:0:49,0:1722,0:-155.199,-14.7505,0,-155.199,-14.7505,-155.199	1/1:151:0,150,0:0:0:150,0:5310,0:-477.561,-45.1545,0,-477.561,-45.1545,-477.561	1/2:167:0,68,97:0:0:68,97:2394,3438:-474.937,-280.044,-259.574,-194.857,0,-165.657	1/1:144:0,144,0:0:0:144,0:5063,0:-455.653,-43.3483,0,-455.653,-43.3483,-455.653	1/1:145:0,145,0:0:0:145,0:5102,0:-459.268,-43.6494,0,-459.268,-43.6494,-459.268	1/1:89:0,88,0:0:0:88,0:3072,0:-276.394,-26.4906,0,-276.394,-26.4906,-276.394	1/1:208:0,207,1:0:0:207,1:7213,36:-648.39,-62.3132,0,-645.452,-59.016,-645.151	1/1:119:0,119,0:0:0:119,0:4213,0:-379.193,-35.8226,0,-379.193,-35.8226,-379.193	1/1:124:0,122,0:0:0:122,0:4289,0:-385.859,-36.7257,0,-385.859,-36.7257,-385.859	1/1:122:0,121,0:0:0:121,0:4271,0:-383.977,-36.4246,0,-383.977,-36.4246,-383.977	1/1:101:0,100,0:0:0:100,0:3504,0:-315.257,-30.103,0,-315.257,-30.103,-315.257	1/1:80:0,80,0:0:0:80,0:2811,0:-252.948,-24.0824,0,-252.948,-24.0824,-252.948	1/1:64:0,64,0:0:0:64,0:2242,0:-201.897,-19.2659,0,-201.897,-19.2659,-201.897	1/1:59:0,59,0:0:0:59,0:2105,0:-189.708,-17.7608,0,-189.708,-17.7608,-189.708	1/1:209:0,207,0:0:0:207,0:7255,0:-652.118,-62.3132,0,-652.118,-62.3132,-652.118	1/1:249:0,248,1:0:0:248,1:8699,36:-782.057,-74.6554,0,-779.119,-71.3582,-778.818	1/2:77:0,25,52:0:0:25,52:856,1853:-220.874,-151.394,-143.869,-69.8266,0,-54.173	1/1:120:0,120,0:0:0:120,0:4214,0:-379.41,-36.1236,0,-379.41,-36.1236,-379.41	1/2:56:0,27,29:0:0:27,29:951,1031:-161.689,-84.3727,-76.2449,-77.6699,0,-68.9401	1/2:86:1,47,38:1:36:47,38:1653,1344:-240.771,-106.523,-95.3124,-131.604,0,-123.103	1/2:228:0,119,108:0:0:119,108:4163,3860:-653.341,-314.868,-279.045,-338.609,0,-306.098	1/1:255:0,255,0:0:0:255,0:8908,0:-801.571,-76.7627,0,-801.571,-76.7627,-801.571	1/2:59:0,29,30:0:0:29,30:1013,1080:-170.79,-88.4823,-79.7525,-82.6621,0,-73.6312	1/2:322:0,183,139:0:0:183,139:6453,4996:-933.2,-407.942,-352.854,-525.614,0,-483.771	1/1:120:0,115,3:0:0:115,3:4061,108:-365.241,-34.6185,0,-356.429,-25.7733,-355.526	1/1:108:0,107,1:0:0:107,1:3727,36:-335.248,-32.2102,0,-332.31,-28.913,-332.009	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/1:9:0,9,0:0:0:9,0:317,0:-28.8696,-2.70927,0,-28.8696,-2.70927,-28.8696	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:4:0,4,0:0:0:4,0:135,0:-12.4828,-1.20412,0,-12.4828,-1.20412,-12.4828	1/2:21:0,16,5:0:0:16,5:572,180:-61.6849,-15.0469,-10.2304,-46.9972,0,-45.4921	1/1:310:0,310,0:0:0:310,0:10879,0:-978.445,-93.3193,0,-978.445,-93.3193,-978.445	1/1:96:0,94,2:0:0:94,2:3249,72:-292.241,-28.2968,0,-286.366,-22.0622,-285.764	1/2:88:0,50,38:0:0:50,38:1757,1360:-254.211,-111.261,-96.21,-143.305,0,-131.865	.:.:.:.:.:.:.:.	1/2:157:0,91,65:0:0:91,65:3175,2317:-446.771,-189.027,-161.633,-257.901,0,-238.334	1/2:36:0,17,19:0:0:17,19:605,684:-105.477,-56.1708,-51.0532,-49.6639,0,-43.9443	1/2:170:0,68,102:0:0:68,102:2406,3668:-494.216,-299.557,-279.087,-194.954,0,-164.249	1/2:82:0,37,45:0:0:37,45:1285,1616:-236.572,-132.117,-120.979,-104.75,0,-91.2034	1/1:115:0,115,0:0:0:115,0:4026,0:-362.302,-34.6185,0,-362.302,-34.6185,-362.302	1/2:84:0,46,38:0:0:46,38:1609,1356:-241.797,-110.901,-97.054,-131.249,0,-119.81	1/2:96:0,46,46:0:0:46,46:1587,1626:-261.374,-132.485,-118.638,-128.941,0,-115.094	1/1:200:0,199,0:0:0:199,0:6965,0:-626.334,-59.905,0,-626.334,-59.905,-626.334	1/1:85:0,82,0:0:0:82,0:2877,0:-258.867,-24.6845,0,-258.867,-24.6845,-258.867	1/2:130:0,59,70:0:0:59,70:2085,2508:-374.423,-204.649,-186.888,-169.877,0,-148.805	1/1:138:0,138,0:0:0:138,0:4841,0:-435.829,-41.5421,0,-435.829,-41.5421,-435.829	1/1:11:0,11,0:0:0:11,0:390,0:-35.4392,-3.31133,0,-35.4392,-3.31133,-35.4392	1/2:79:0,35,44:0:0:35,44:1237,1576:-229.581,-128.886,-118.35,-101.05,0,-87.8049	1/1:71:0,69,1:0:0:69,1:2448,36:-220.165,-20.7711,0,-217.228,-17.7932,-216.927	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:145:0,66,78:0:0:66,78:2316,2792:-416.152,-227.68,-207.812,-188.466,0,-164.985	1/1:55:0,55,0:0:0:55,0:1945,0:-175.3,-16.5567,0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chr03	622028	.	GGATT	AGATT,AGACT	167258	PASS	AB=0.487962,0.507634;ABP=7.29714,4.73422;AC=149,39;AF=0.792553,0.207447;AN=188;AO=5967,1744;CIGAR=1X4M,1X2M1X1M;DP=7740;DPB=7740.2;DPRA=0,1.23119;EPP=12960.2,3790.06;EPPR=7.35324;GTI=1;LEN=1,5;MEANALT=1.75532,2.34043;MQM=59.9772,59.6972;MQMR=60;NS=94;NUMALT=2;ODDS=0.427504;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=213875,61696;QR=70;RO=2;RPL=0,0;RPP=12960.2,3790.06;RPPR=7.35324;RPR=5967,1744;RUN=1,1;SAF=5967,1744;SAP=12960.2,3790.06;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:33:0,16,17:0:0:16,17:576,603:-96.4696,-49.4683,-44.6518,-47.3585,0,-42.241	1/2:105:0,57,48:0:0:57,48:2016,1690:-302.118,-137.92,-120.761,-164.55,0,-150.101	1/2:113:0,62,51:0:0:62,51:2216,1810:-328.495,-147.81,-129.146,-181.041,0,-165.688	1/1:125:0,124,0:0:0:124,0:4452,0:-400.489,-37.3277,0,-400.489,-37.3277,-400.489	1/1:41:0,39,1:0:0:39,1:1396,36:-125.579,-11.7402,0,-122.642,-8.80275,-122.341	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5123,-9.0309,0,-97.5123,-9.0309,-97.5123	1/1:86:0,86,0:0:0:86,0:3084,0:-277.788,-25.8886,0,-277.788,-25.8886,-277.788	1/2:119:0,54,64:0:0:54,64:1932,2250:-340.687,-183.141,-166.885,-157.568,0,-138.302	1/1:60:0,60,0:0:0:60,0:2144,0:-193.228,-18.0618,0,-193.228,-18.0618,-193.228	1/1:104:0,104,0:0:0:104,0:3720,0:-334.994,-31.3071,0,-334.994,-31.3071,-334.994	1/1:69:1,68,0:1:34:68,0:2448,0:-217.175,-17.3722,0,-217.476,-20.47,-220.234	1/1:76:0,76,0:0:0:76,0:2728,0:-245.763,-22.8783,0,-245.763,-22.8783,-245.763	1/1:52:0,52,0:0:0:52,0:1868,0:-168.399,-15.6536,0,-168.399,-15.6536,-168.399	1/1:65:0,65,0:0:0:65,0:2332,0:-210.14,-19.567,0,-210.14,-19.567,-210.14	1/1:70:0,70,0:0:0:70,0:2520,0:-227.051,-21.0721,0,-227.051,-21.0721,-227.051	1/1:54:0,54,0:0:0:54,0:1936,0:-174.512,-16.2556,0,-174.512,-16.2556,-174.512	1/1:55:0,55,0:0:0:55,0:1967,0:-177.301,-16.5567,0,-177.301,-16.5567,-177.301	1/1:49:0,49,0:0:0:49,0:1764,0:-159.036,-14.7505,0,-159.036,-14.7505,-159.036	1/1:40:0,40,0:0:0:40,0:1440,0:-129.898,-12.0412,0,-129.898,-12.0412,-129.898	1/1:161:0,161,0:0:0:161,0:5780,0:-520.312,-48.4658,0,-520.312,-48.4658,-520.312	1/1:115:0,114,0:0:0:114,0:4096,0:-368.462,-34.3174,0,-368.462,-34.3174,-368.462	1/2:116:0,28,87:0:0:28,87:1004,3058:-330.73,-248.84,-240.411,-81.8872,0,-55.6976	1/1:58:0,58,0:0:0:58,0:2080,0:-187.47,-17.4597,0,-187.47,-17.4597,-187.47	1/2:113:0,80,33:0:0:80,33:2868,1171:-329.682,-95.7627,-71.6803,-234.275,0,-224.341	1/2:121:0,55,66:0:0:55,66:1980,2319:-350.656,-189.094,-172.537,-161.918,0,-142.05	1/2:196:0,87,109:0:0:87,109:3113,3852:-567.897,-314.047,-287.858,-254.205,0,-221.393	1/1:221:0,220,0:0:0:220,0:7887,0:-709.494,-66.2266,0,-709.494,-66.2266,-709.494	1/2:40:0,23,17:0:0:23,17:824,605:-116.809,-49.6283,-42.7046,-67.5372,0,-62.4197	1/2:260:0,144,116:0:0:144,116:5161,4099:-755.08,-334.155,-290.807,-421.28,0,-386.36	1/1:88:0,83,5:0:0:83,5:2961,177:-266.368,-24.9855,0,-251.951,-10.2142,-250.446	1/1:61:0,61,0:0:0:61,0:2162,0:-194.843,-18.3628,0,-194.843,-18.3628,-194.843	1/2:14:0,5,9:0:0:5,9:180,311:-40.3073,-25.615,-24.1099,-15.0469,0,-12.3376	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/2:11:0,6,5:0:0:6,5:216,180:-32.6714,-15.0469,-13.2407,-17.9843,0,-16.4792	1/1:191:0,190,0:0:0:190,0:6824,0:-613.897,-57.1957,0,-613.897,-57.1957,-613.897	1/1:201:0,198,2:0:0:198,2:7070,72:-635.999,-59.6039,0,-630.124,-53.7291,-629.522	1/2:87:0,38,49:0:0:38,49:1368,1719:-251.848,-140.223,-128.783,-111.982,0,-97.2312	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:82:0,39,43:0:0:39,43:1404,1520:-238.707,-124.144,-112.404,-114.919,0,-101.975	1/2:37:0,21,16:0:0:21,16:756,570:-108.504,-46.8159,-40.4943,-62.0456,0,-57.2291	1/2:97:0,55,42:0:0:55,42:1965,1495:-282.384,-122.174,-105.617,-160.567,0,-147.923	1/2:74:0,44,30:0:0:44,30:1580,1060:-215.564,-86.6751,-73.4298,-129.244,0,-120.213	1/1:48:0,48,0:0:0:48,0:1720,0:-155.086,-14.4494,0,-155.086,-14.4494,-155.086	1/2:87:0,41,45:0:0:41,45:1453,1589:-247.803,-129.435,-117.092,-118.45,0,-104.903	1/2:88:0,38,50:0:0:38,50:1345,1765:-253.62,-144.064,-132.625,-109.909,0,-94.8575	1/1:130:0,128,0:0:0:128,0:4569,0:-411.04,-38.5318,0,-411.04,-38.5318,-411.04	1/1:104:0,104,0:0:0:104,0:3732,0:-336.075,-31.3071,0,-336.075,-31.3071,-336.075	1/2:117:0,56,59:0:0:56,59:2012,2086:-334.025,-169.886,-153.028,-164.136,0,-146.375	1/1:128:0,127,1:0:0:127,1:4541,36:-408.494,-38.2308,0,-405.557,-34.9336,-405.256	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:138:0,54,83:0:0:54,83:1925,2943:-396.65,-239.737,-223.481,-156.909,0,-131.924	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/2:94:0,37,57:0:0:37,57:1332,2019:-273.51,-164.823,-153.685,-109.044,0,-91.8856	1/1:29:0,28,0:0:0:28,0:1008,0:-90.6768,-8.4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chr03	622115	.	C	T	140293	PASS	AB=0.526467;ABP=24.1603;AC=149;AF=0.792553;AN=188;AO=6584;CIGAR=1X;DP=8240;DPB=8240;DPRA=44.2903;EPP=14300;EPPR=3583.77;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9711;MQMR=59.9903;NS=94;NUMALT=1;ODDS=1.63543;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=234139;QR=58505;RO=1653;RPL=0;RPP=14300;RPPR=3583.77;RPR=6584;RUN=1;SAF=0;SAP=14300;SAR=6584;SRF=0;SRP=3592.45;SRR=1653;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:17,6:17:604:6:216:-12.8668,0,-47.7669	0/1:68:31,37:31:1107:37:1328:-99.3522,0,-79.4701	0/1:89:23,66:23:828:66:2346:-184.607,0,-48.0524	1/1:181:0,181:0:0:181:6419:-577.801,-54.4864,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:126:0,126:0:0:126:4480:-403.371,-37.9298,0	0/1:107:56,51:56:1982:51:1815:-131.42,0,-146.443	1/1:66:0,66:0:0:66:2356:-212.298,-19.868,0	1/1:87:0,87:0:0:87:3112:-280.305,-26.1896,0	1/1:64:0,64:0:0:64:2258:-203.477,-19.2659,0	1/1:78:1,77:1:36:77:2736:-242.885,-19.8821,0	1/1:70:0,70:0:0:70:2481:-223.543,-21.0721,0	1/1:65:0,64:0:0:64:2267:-204.018,-19.2659,0	1/1:67:0,66:0:0:66:2317:-208.548,-19.868,0	1/1:42:0,42:0:0:42:1475:-133.042,-12.6433,0	1/1:63:0,63:0:0:63:2222:-200.214,-18.9649,0	1/1:72:0,72:0:0:72:2546:-229.391,-21.6742,0	1/1:58:0,58:0:0:58:2042:-184.05,-17.4597,0	1/1:160:0,160:0:0:160:5710:-514.019,-48.1648,0	1/1:118:0,118:0:0:118:4196:-377.821,-35.5215,0	0/1:67:37,30:37:1315:30:1080:-77.3442,0,-98.482	1/1:53:0,53:0:0:53:1881:-169.569,-15.9546,0	0/1:69:26,43:26:920:43:1525:-116.771,0,-62.346	0/1:66:34,32:34:1216:32:1152:-84.1222,0,-89.8786	0/1:304:117,187:117:4176:187:6708:-512.281,0,-284.51	1/1:168:1,167:1:32:167:5923:-529.983,-47.3737,0	0/1:40:19,21:19:676:21:752:-55.9651,0,-49.1268	0/1:310:122,188:122:4271:188:6703:-510.024,0,-291.249	1/1:94:0,94:0:0:94:3330:-299.918,-28.2968,0	1/1:113:0,112:0:0:112:3991:-359.021,-33.7154,0	1/1:4:0,4:0:0:4:143:-13.2214,-1.20412,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:266:0,266:0:0:266:9472:-852.443,-80.074,0	1/1:209:0,209:0:0:209:7414:-667.304,-62.9153,0	0/1:68:40,28:40:1406:28:981:-68.1299,0,-106.366	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:175:83,92:83:2930:92:3292:-243.819,0,-211.253	0/1:50:24,26:24:843:26:928:-68.7868,0,-61.1365	0/1:92:45,47:45:1616:47:1692:-124.872,0,-118.035	0/1:76:40,36:40:1407:36:1290:-93.5255,0,-104.048	1/1:77:0,77:0:0:77:2698:-243.046,-23.1793,0	0/1:92:44,48:44:1567:48:1706:-126.128,0,-113.626	0/1:93:41,52:41:1452:52:1868:-140.403,0,-102.98	1/1:165:0,165:0:0:165:5890:-530.211,-49.67,0	1/1:87:0,87:0:0:87:3073:-276.792,-26.1896,0	0/1:103:49,54:49:1737:54:1913:-141.439,0,-125.606	1/1:98:0,98:0:0:98:3504:-315.571,-29.5009,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:147:71,76:71:2527:76:2686:-197.733,0,-183.43	1/1:34:0,34:0:0:34:1204:-108.666,-10.235,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:173:72,101:72:2545:101:3576:-269.971,0,-177.222	1/1:45:0,45:0:0:45:1603:-144.559,-13.5464,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:55:12,43:12:432:43:1534:-121.796,0,-22.6645	1/1:130:0,130:0:0:130:4633:-417.134,-39.1339,0	0/1:6:1,5:1:36:5:172:-14.0118,0,-1.79209	0/1:211:112,99:112:3992:99:3552:-256.37,0,-295.952	1/1:119:0,119:0:0:119:4221:-380.067,-35.8226,0	0/1:38:13,25:13:468:25:894:-69.3395,0,-31.0205	1/1:104:1,103:1:36:103:3696:-329.243,-27.7088,0	1/1:108:1,107:1:32:107:3801:-339.089,-29.3119,0	0/1:87:47,40:47:1663:40:1431:-102.897,0,-123.767	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	0/1:74:34,40:34:1212:40:1406:-104.559,0,-87.1101	0/1:85:48,37:48:1669:37:1312:-92.7941,0,-124.907	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:108:0,108:0:0:108:3852:-346.875,-32.5112,0	1/1:62:0,62:0:0:62:2210:-199.165,-18.6639,0	1/1:135:0,135:0:0:135:4797:-431.886,-40.6391,0	1/1:140:0,140:0:0:140:4998:-449.965,-42.1442,0	0/1:62:21,41:21:739:41:1468:-113.752,0,-48.1685	1/1:100:0,100:0:0:100:3555:-320.158,-30.103,0	0/1:7:4,3:4:135:3:108:-7.96796,0,-10.3753	1/1:124:0,124:0:0:124:4431:-398.962,-37.3277,0	1/1:84:0,84:0:0:84:3002:-270.412,-25.2865,0	1/1:190:0,190:0:0:190:6693:-602.322,-57.1957,0	0/1:95:63,32:63:2249:32:1144:-74.6717,0,-174.074	0/1:63:29,34:29:1015:34:1213:-90.5103,0,-72.696	0/1:91:45,46:45:1587:46:1648:-121.215,0,-115.726	0/1:157:87,70:87:3070:70:2471:-175.379,0,-229.269	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	1/1:85:1,84:1:36:84:2999:-266.543,-21.9893,0	1/1:82:0,82:0:0:82:2913:-262.405,-24.6845,0	0/1:40:27,13:27:955:13:468:-30.4184,0,-74.2237	0/1:111:59,52:59:2053:52:1824:-131.025,0,-151.623	0/1:72:47,25:47:1645:25:855:-55.5835,0,-126.661	1/1:134:0,134:0:0:134:4749:-427.569,-40.338,0	1/1:111:0,111:0:0:111:3925:-353.444,-33.4143,0
chr03	622225	.	G	A	132396	PASS	AB=0.508915;ABP=5.29464;AC=148;AF=0.787234;AN=188;AO=6265;CIGAR=1X;DP=7908;DPB=7908;DPRA=21.2473;EPP=13607.3;EPPR=3570.74;GTI=1;LEN=1;MEANALT=1;MQM=58.5984;MQMR=59.6293;NS=94;NUMALT=1;ODDS=2.48864;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222202;QR=57765;RO=1643;RPL=6265;RPP=13607.3;RPPR=3570.74;RPR=0;RUN=1;SAF=6265;SAP=13607.3;SAR=0;SRF=1643;SRP=3570.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:20,24:20:708:24:848:-63.3438,0,-50.7839	0/1:149:70,79:70:2473:79:2814:-208.267,0,-177.861	0/1:44:22,22:22:755:22:772:-56.556,0,-54.9996	1/1:176:2,174:2:72:174:6117:-541.954,-46.1481,0	1/1:96:2,94:2:72:94:3326:-292.548,-22.0622,0	1/1:107:0,107:0:0:107:3802:-341.913,-32.2102,0	1/1:86:0,86:0:0:86:3046:-273.564,-25.8886,0	0/1:181:84,97:84:2955:97:3431:-253.828,0,-211.213	1/1:80:0,80:0:0:80:2826:-254.144,-24.0824,0	1/1:97:0,97:0:0:97:3451:-310.381,-29.1999,0	1/1:37:0,37:0:0:37:1310:-118.18,-11.1381,0	1/1:46:0,46:0:0:46:1623:-146.322,-13.8474,0	1/1:43:0,43:0:0:43:1509:-136.026,-12.9443,0	1/1:42:0,42:0:0:42:1496:-134.8,-12.6433,0	1/1:42:0,42:0:0:42:1478:-133.298,-12.6433,0	1/1:29:0,29:0:0:29:1027:-92.5622,-8.72987,0	1/1:43:0,43:0:0:43:1532:-138.131,-12.9443,0	1/1:37:0,37:0:0:37:1308:-118.019,-11.1381,0	1/1:27:0,27:0:0:27:964:-87.0309,-8.12781,0	1/1:173:0,173:0:0:173:6114:-549.456,-52.0782,0	1/1:112:0,112:0:0:112:3974:-356.694,-33.7154,0	0/1:165:105,60:105:3719:60:2144:-141.992,0,-285.241	1/1:45:0,45:0:0:45:1595:-143.778,-13.5464,0	0/1:105:53,52:53:1860:52:1860:-135.981,0,-136.069	0/1:74:28,46:28:966:46:1640:-125.562,0,-64.9735	0/1:439:207,232:207:7333:232:8258:-610.486,0,-527.482	1/1:111:1,110:1:36:110:3899:-347.373,-29.8161,0	0/1:27:11,16:11:388:16:572:-43.6856,0,-27.128	0/1:167:76,91:76:2622:91:3219:-239.354,0,-185.949	1/1:212:1,211:1:36:211:7460:-665.303,-60.2201,0	1/1:165:0,165:0:0:165:5827:-523.357,-49.67,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:128:0,128:0:0:128:4528:-406.408,-38.5318,0	1/1:232:1,231:1:36:231:8226:-736.282,-66.2407,0	0/1:26:13,13:13:446:13:460:-33.8726,0,-32.6396	1/1:3:0,3:0:0:3:108:-10.052,-0.90309,0	0/1:124:59,65:59:2069:65:2319:-170.82,0,-149.127	0/1:11:6,5:6:212:5:176:-12.8737,0,-16.1135	0/1:148:78,70:78:2755:70:2496:-180.205,0,-203.627	0/1:30:14,16:14:477:16:576:-43.1376,0,-34.2222	1/1:34:0,34:0:0:34:1199:-108.194,-10.235,0	0/1:102:51,51:51:1801:51:1794:-130.669,0,-131.663	0/1:107:53,54:53:1866:54:1940:-142.555,0,-135.995	1/1:155:1,154:1:36:154:5483:-489.012,-43.0614,0	1/1:121:0,121:0:0:121:4323:-388.967,-36.4246,0	0/1:131:58,73:58:2013:73:2612:-195.766,0,-141.993	1/1:114:0,114:0:0:114:4037:-363.357,-34.3174,0	1/1:5:0,5:0:0:5:171:-15.7238,-1.50515,0	0/1:92:52,40:52:1827:40:1432:-101.444,0,-136.99	1/1:80:0,80:0:0:80:2851:-256.513,-24.0824,0	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	0/1:64:27,37:27:942:37:1324:-100.151,0,-65.8227	1/1:25:0,25:0:0:25:874:-78.8974,-7.52575,0	0/1:11:5,6:5:171:6:216:-16.4736,0,-12.4141	0/1:26:14,12:14:491:12:428:-31.0216,0,-36.6943	0/1:107:56,51:56:1975:51:1819:-131.69,0,-145.806	1/1:68:0,68:0:0:68:2415:-217.53,-20.47,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:138:65,73:65:2302:73:2567:-189.512,0,-165.894	1/1:263:2,261:2:72:261:9284:-827.584,-72.3342,0	0/1:58:25,33:25:896:33:1171:-88.2369,0,-63.4914	1/1:48:0,48:0:0:48:1703:-153.329,-14.4494,0	1/1:106:0,106:0:0:106:3728:-335.525,-31.9092,0	0/1:91:57,34:57:2010:34:1189:-79.8186,0,-153.758	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:61:28,33:28:953:33:1167:-86.7939,0,-67.7038	0/1:58:22,36:22:775:36:1274:-97.3568,0,-52.6105	1/1:25:0,25:0:0:25:892:-80.5843,-7.52575,0	1/1:100:0,100:0:0:100:3534:-318.075,-30.103,0	1/1:46:0,46:0:0:46:1639:-147.726,-13.8474,0	1/1:190:0,190:0:0:190:6718:-603.352,-57.1957,0	1/1:139:0,139:0:0:139:4919:-442.747,-41.8432,0	0/1:165:71,94:71:2487:94:3320:-248.779,0,-174.197	1/1:101:1,100:1:36:100:3550:-315.621,-26.8148,0	0/1:7:2,5:2:63:5:176:-14.0778,0,-3.87594	1/1:102:0,102:0:0:102:3613:-325.372,-30.7051,0	1/1:131:1,130:1:36:130:4602:-410.031,-35.8367,0	1/1:234:1,233:1:32:233:8247:-738.78,-67.2419,0	0/1:77:34,43:34:1203:43:1523:-114.022,0,-85.3957	0/1:34:16,18:16:549:18:640:-46.704,0,-39.4972	0/1:38:20,18:20:716:18:644:-46.7986,0,-52.6982	0/1:72:50,22:50:1784:22:776:-48.3463,0,-139.164	1/1:35:0,35:0:0:35:1260:-113.67,-10.5361,0	1/1:52:0,52:0:0:52:1860:-167.18,-15.6536,0	1/1:63:0,63:0:0:63:2240:-201.818,-18.9649,0	0/1:27:12,15:12:415:15:528:-39.701,0,-29.5525	0/1:60:33,27:33:1157:27:941:-66.8887,0,-86.3634	0/1:40:22,18:22:771:18:644:-46.2424,0,-57.6668	1/1:64:0,64:0:0:64:2272:-204.568,-19.2659,0	1/1:62:1,61:1:36:61:2180:-191.605,-15.0656,0
chr03	626979	.	A	G	147342	PASS	AB=0.486674;ABP=8.33456;AC=146;AF=0.784946;AN=186;AO=6392;CIGAR=1X;DP=8180;DPB=8180;DPRA=44.4457;EPP=11234.9;EPPR=2798.31;GTI=1;LEN=1;MEANALT=1.05435;MQM=58.9779;MQMR=59.5928;NS=93;NUMALT=1;ODDS=4.14548;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228434;QR=63667;RO=1783;RPL=6071;RPP=11234.9;RPPR=2798.31;RPR=321;RUN=1;SAF=6392;SAP=13883.1;SAR=0;SRF=1783;SRP=3874.75;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:13,19:13:453:19:669:-49.8333,0,-31.4498	0/1:74:35,39:35:1256:39:1404:-104.193,0,-91.0282	0/1:61:31,30:31:1116:30:1080:-78.7698,0,-82.34	1/1:138:0,137:0:0:137:4910:-441.621,-41.2411,0	1/1:57:1,56:1:36:56:1993:-171.565,-13.5604,0	1/1:50:0,50:0:0:50:1787:-159.026,-15.0515,0	1/1:101:0,101:0:0:101:3624:-326.225,-30.404,0	0/1:211:90,121:90:3236:121:4333:-322.174,0,-227.894	1/1:102:1,101:1:36:101:3609:-320.847,-27.1068,0	1/1:151:0,150:0:0:150:5381:-483.919,-45.1545,0	1/1:87:0,87:0:0:87:3100:-279.208,-26.1896,0	1/1:83:0,83:0:0:83:2948:-265.556,-24.9855,0	1/1:83:0,83:0:0:83:2968:-267.163,-24.9855,0	1/1:96:0,96:0:0:96:3427:-308.51,-28.8989,0	1/1:98:0,98:0:0:98:3473:-312.78,-29.5009,0	1/1:65:0,65:0:0:65:2308:-207.979,-19.567,0	1/1:81:1,80:1:36:80:2850:-253.109,-20.7852,0	1/1:74:0,74:0:0:74:2643:-237.926,-22.2762,0	1/1:33:0,33:0:0:33:1160:-104.698,-9.93399,0	1/1:128:0,128:0:0:128:4596:-411.975,-38.5318,0	1/1:132:0,132:0:0:132:4697:-422.73,-39.736,0	0/1:136:99,37:99:3473:37:1328:-78.5677,0,-271.304	1/1:50:0,50:0:0:50:1796:-161.284,-15.0515,0	0/1:100:49,51:49:1741:51:1824:-134.208,0,-126.857	0/1:34:15,19:15:532:19:680:-51.0338,0,-37.9781	0/1:392:188,204:188:6664:204:7324:-540.577,0,-481.548	1/1:122:0,122:0:0:122:4357:-391.47,-36.7257,0	0/1:48:25,23:25:896:23:824:-60.0339,0,-66.5109	0/1:112:54,58:54:1936:58:2088:-154.16,0,-140.8	1/1:96:2,94:2:72:94:3367:-295.773,-22.0622,0	1/1:77:0,77:0:0:77:2760:-248.433,-23.1793,0	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:9:0,9:0:0:9:324:-29.3139,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	1/1:292:0,292:0:0:292:10414:-937.179,-87.9008,0	1/1:233:1,232:1:36:232:8298:-740.797,-66.5417,0	0/1:73:40,33:40:1428:33:1179:-84.2484,0,-106.842	.:.:.:.:.:.:.:.	0/1:76:38,38:38:1364:38:1364:-100.182,0,-100.182	0/1:42:24,18:24:864:18:648:-46.0086,0,-65.4393	0/1:97:51,46:51:1828:46:1637:-117.702,0,-135.319	0/1:95:51,44:51:1827:44:1576:-113.534,0,-136.112	1/1:95:0,95:0:0:95:3366:-303.155,-28.5979,0	0/1:67:34,33:34:1209:33:1184:-86.0286,0,-88.9447	0/1:108:54,54:54:1936:54:1928:-138.076,0,-141.964	1/1:77:0,77:0:0:77:2749:-247.163,-23.1793,0	1/1:85:0,85:0:0:85:3020:-271.57,-25.5876,0	0/1:129:71,58:71:2552:58:2080:-148.637,0,-191.094	1/1:67:0,67:0:0:67:2373:-213.827,-20.169,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:55:26,29:26:936:29:1044:-77.1472,0,-67.9946	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:79:36,43:36:1296:43:1544:-115.472,0,-93.1626	1/1:38:0,38:0:0:38:1345:-121.139,-11.4391,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:3,2:3:108:2:72:-5.2843,0,-8.57002	0/1:39:21,18:21:737:18:629:-45.0634,0,-54.9058	1/1:154:1,152:1:36:152:5408:-483.027,-42.8191,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:176:83,92:83:2976:92:3289:-243.188,0,-215.032	1/1:209:1,208:1:36:208:7434:-662.013,-59.317,0	0/1:121:65,56:65:2325:56:2008:-144.309,0,-173.074	1/1:49:0,49:0:0:49:1760:-158.167,-14.7505,0	1/1:107:0,107:0:0:107:3821:-343.467,-32.2102,0	0/1:46:30,16:30:1076:16:576:-37.5573,0,-83.3039	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	0/1:59:25,34:25:892:34:1224:-92.7063,0,-62.7843	0/1:101:48,53:48:1728:53:1896:-140.514,0,-125.401	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:113:0,113:0:0:113:4004:-360.354,-34.0164,0	1/1:53:0,53:0:0:53:1883:-169.747,-15.9546,0	1/1:152:0,152:0:0:152:5406:-483.895,-45.7566,0	1/1:91:0,91:0:0:91:3272:-294.699,-27.3937,0	0/1:70:41,29:41:1393:29:1029:-66.3098,0,-104.468	1/1:67:0,67:0:0:67:2385:-214.906,-20.169,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:105:1,104:1:36:104:3740:-332.807,-28.0099,0	1/1:94:0,94:0:0:94:3360:-301.176,-28.2968,0	1/1:183:0,183:0:0:183:6572:-590.073,-55.0885,0	0/1:114:68,46:68:2436:46:1652:-114.651,0,-185.178	0/1:84:40,44:40:1428:44:1580:-117.205,0,-103.531	0/1:114:63,51:63:2264:51:1836:-131.203,0,-169.705	0/1:216:102,114:102:3664:114:4088:-303.083,0,-264.94	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:108:0,107:0:0:107:3813:-342.629,-32.2102,0	1/1:85:1,84:1:36:84:3011:-267.623,-21.9893,0	0/1:35:18,17:18:648:17:599:-43.702,0,-48.1158	0/1:116:61,55:61:2192:55:1952:-141.034,0,-162.626	0/1:107:66,41:66:2357:41:1476:-100.926,0,-180.177	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:142:0,142:0:0:142:5071:-456.463,-42.7463,0
chr03	629446	.	G	A	60164.5	PASS	AB=0.527489;ABP=11.8446;AC=147;AF=0.781915;AN=188;AO=2787;CIGAR=1X;DP=3436;DPB=3436;DPRA=7.44783;EPP=6054.9;EPPR=1410.12;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9368;MQMR=59.9846;NS=94;NUMALT=1;ODDS=0.589919;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99928;QR=23198;RO=648;RPL=0;RPP=6054.9;RPPR=1410.12;RPR=2787;RUN=1;SAF=2787;SAP=6054.9;SAR=0;SRF=648;SRP=1410.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6511	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:46:20,26:20:711:26:936:-70.7087,0,-50.4683	1/1:111:0,111:0:0:111:3977:-358.11,-33.4143,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:21:0,21:0:0:21:752:-67.9778,-6.32163,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:40:0,40:0:0:40:1432:-129.175,-12.0412,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:29:0,29:0:0:29:1031:-93.1033,-8.72987,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:35:0,35:0:0:35:1248:-112.539,-10.5361,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:60:0,60:0:0:60:2133:-192.236,-18.0618,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	0/1:39:30,9:30:1072:9:324:-17.7657,0,-85.0523	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:81:34,47:34:1216:47:1688:-127.824,0,-85.3631	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:119:60,58:60:2156:58:2080:-151.589,0,-158.425	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4141	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:48:18,30:18:639:30:1068:-81.9808,0,-43.3888	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:41:15,26:15:540:26:917:-70.4847,0,-36.5943	0/1:28:11,17:11:396:17:608:-46.6232,0,-27.5539	1/1:30:0,30:0:0:30:1080:-97.5109,-9.0309,0	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/1:40:18,22:18:644:22:792:-59.5645,0,-46.2494	1/1:74:0,74:0:0:74:2664:-240.005,-22.2762,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:55:25,30:25:896:30:1076:-80.5962,0,-64.4037	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:11:0,11:0:0:11:377:-34.2579,-3.31133,0	0/1:36:18,18:18:644:18:633:-46.4588,0,-47.4535	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:59:17,42:17:604:42:1508:-118.254,0,-36.9298	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:30:11,19:11:392:19:684:-52.8594,0,-26.5892	1/1:71:0,71:0:0:71:2552:-229.924,-21.3731,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:163:81,82:81:2912:82:2925:-214.413,0,-213.247	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:27:18,9:18:639:9:324:-21.378,0,-49.7104	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:59:1,58:1:36:58:2061:-182.157,-14.1625,0	0/1:53:31,22:31:1108:22:788:-55.284,0,-84.0764	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:31:13,18:13:459:18:648:-49.32,0,-32.3122	1/1:23:0,23:0:0:23:824:-74.4787,-6.92369,0	1/1:28:0,28:0:0:28:1004:-90.6752,-8.42884,0	1/1:10:0,10:0:0:10:360:-32.7419,-3.0103,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	0/1:30:19,11:19:684:11:392:-26.5892,0,-52.8594	1/1:37:2,35:2:72:35:1252:-106.135,-4.30139,0	0/1:8:3,5:3:108:5:165:-12.7654,0,-7.66693	1/1:37:0,37:0:0:37:1328:-119.82,-11.1381,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:65:0,65:0:0:65:2324:-209.322,-19.567,0	0/1:62:32,30:32:1148:30:1076:-78.489,0,-84.9644	0/1:26:9,17:9:324:17:608:-47.2252,0,-21.6791	0/1:25:5,20:5:171:20:720:-57.603,0,-8.1997	0/1:49:21,28:21:756:28:1008:-76.2859,0,-53.6168	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:27:0,27:0:0:27:964:-87.0706,-8.12781,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:49:24,25:24:864:25:900:-66.5705,0,-63.3321	0/1:27:14,13:14:495:13:464:-33.9697,0,-36.7537	1/1:144:0,144:0:0:144:5153:-463.899,-43.3483,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0
chr03	629487	.	CA	TA,TG	73033.1	PASS	AB=0.525651,0.470632;ABP=10.6968,13.0863;AC=147,41;AF=0.781915,0.218085;AN=188;AO=2745,647;CIGAR=1X1M,2X;DP=3401;DPB=3401.5;DPRA=7.37174,0.971119;EPP=5963.7,1407.95;EPPR=5.18177;GTI=1;LEN=1,2;MEANALT=1.52174,2.07143;MQM=59.9395,59.9706;MQMR=60;NS=94;NUMALT=2;ODDS=1.0673;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=97855,22485;QR=36;RO=1;RPL=2745,647;RPP=5963.7,1407.95;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=2745,647;SAP=5963.7,1407.95;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,7,15:0:0:7,15:252,525:-63.6286,-43.0635,-40.9563,-20.9217,0,-16.4063	1/2:18:0,11,7:0:0:11,7:396,237:-51.8776,-19.5529,-16.2416,-32.6714,0,-30.5642	1/2:45:0,26,19:0:0:26,19:928,680:-131.461,-55.8098,-47.983,-76.0081,0,-70.2886	1/1:112:0,112,0:0:0:112,0:3991,0:-359.37,-33.7154,0,-359.37,-33.7154,-359.37	1/1:19:0,18,0:0:0:18,0:640,0:-57.7117,-5.41854,0,-57.7117,-5.41854,-57.7117	1/1:20:0,20,0:0:0:20,0:701,0:-63.4108,-6.0206,0,-63.4108,-6.0206,-63.4108	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/2:13:0,6,6:0:0:6,6:216,216:-35.3689,-17.7358,-15.9297,-17.7358,0,-15.9297	1/1:41:0,41,0:0:0:41,0:1458,0:-131.514,-12.3422,0,-131.514,-12.3422,-131.514	1/1:37:0,37,0:0:0:37,0:1324,0:-119.462,-11.1381,0,-119.462,-11.1381,-119.462	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/1:48:0,48,0:0:0:48,0:1713,0:-154.454,-14.4494,0,-154.454,-14.4494,-154.454	1/1:30:0,30,0:0:0:30,0:1067,0:-96.3412,-9.0309,0,-96.3412,-9.0309,-96.3412	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:34:0,34,0:0:0:34,0:1212,0:-109.35,-10.235,0,-109.35,-10.235,-109.35	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:12:0,12,0:0:0:12,0:424,0:-38.4964,-3.61236,0,-38.4964,-3.61236,-38.4964	1/1:59:0,59,0:0:0:59,0:2103,0:-189.539,-17.7608,0,-189.539,-17.7608,-189.539	1/1:68:0,68,0:0:0:68,0:2427,0:-218.685,-20.47,0,-218.685,-20.47,-218.685	1/2:40:0,10,30:0:0:10,30:360,1037:-113.924,-84.5466,-81.5363,-29.6798,0,-20.6489	1/1:47:0,46,1:0:0:46,1:1652,25:-148.716,-13.8474,0,-146.77,-11.6485,-146.469	1/2:17:0,13,4:0:0:13,4:468,133:-49.3009,-11.0935,-7.18008,-38.5463,0,-37.3421	1/2:17:0,6,11:0:0:6,11:216,385:-49.3009,-31.6729,-29.8667,-17.9843,0,-14.673	1/2:78:0,44,34:0:0:44,34:1575,1180:-224.709,-96.2648,-83.0195,-128.796,0,-118.56	1/1:71:0,71,0:0:0:71,0:2552,0:-229.874,-21.3731,0,-229.874,-21.3731,-229.874	1/2:8:0,4,4:0:0:4,4:144,129:-22.4925,-10.7241,-9.51998,-12.1095,0,-10.9054	1/2:118:0,57,60:0:0:57,60:2035,2030:-330.461,-164.546,-147.388,-165.903,0,-147.841	1/1:41:0,41,0:0:0:41,0:1451,0:-130.885,-12.3422,0,-130.885,-12.3422,-130.885	1/1:69:0,69,0:0:0:69,0:2467,0:-222.283,-20.7711,0,-222.283,-20.7711,-222.283	2/2:7:0,0,7:0:0:0,7:0,237:-21.6596,-21.6596,-21.6596,-2.10721,-2.10721,0	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:8:0,2,6:0:0:2,6:72,205:-22.8569,-16.9775,-16.3754,-6.23466,0,-4.42848	1/1:87:0,87,0:0:0:87,0:3089,0:-278.238,-26.1896,0,-278.238,-26.1896,-278.238	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/2:10:0,4,6:0:0:4,6:144,209:-29.0977,-17.3434,-16.1393,-12.1095,0,-10.3033	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:46:0,29,17:0:0:29,17:1030,597:-132.868,-48.9386,-40.2087,-84.282,0,-79.1645	1/2:12:0,7,5:0:0:7,5:252,180:-35.6088,-15.0469,-12.9397,-20.9217,0,-19.4166	1/2:41:0,26,15:0:0:26,15:929,524:-118.705,-42.9733,-35.1466,-76.0836,0,-71.5682	1/2:28:0,17,11:0:0:17,11:612,392:-82.2472,-32.3089,-27.1914,-50.2959,0,-46.9846	1/1:28:0,28,0:0:0:28,0:1008,0:-91.034,-8.42884,0,-91.034,-8.42884,-91.034	1/2:24:0,9,15:0:0:9,15:324,529:-69.8647,-43.4252,-40.7159,-26.7966,0,-22.2811	1/2:39:0,21,18:0:0:21,18:756,635:-113.749,-52.0591,-45.7375,-62.0456,0,-56.6271	1/1:74:0,74,0:0:0:74,0:2621,0:-236.136,-22.2762,0,-236.136,-22.2762,-236.136	1/1:29:0,29,0:0:0:29,0:1039,0:-93.8241,-8.72987,0,-93.8241,-8.72987,-93.8241	1/2:57:0,31,25:0:0:31,25:1097,885:-161.434,-72.0823,-62.7503,-89.3464,0,-81.8207	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/1:11:0,11,0:0:0:11,0:394,0:-35.8015,-3.31133,0,-35.8015,-3.31133,-35.8015	1/2:38:0,19,19:0:0:19,19:680,644:-108.016,-52.555,-46.8354,-55.8096,0,-50.09	1/1:31:0,31,0:0:0:31,0:1092,0:-98.5868,-9.33193,0,-98.5868,-9.33193,-98.5868	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:58:0,42,16:0:0:42,16:1508,557:-168.661,-45.6407,-32.9975,-123.371,0,-118.555	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:4:0,4,0:0:0:4,0:139,0:-12.8522,-1.20412,0,-12.8522,-1.20412,-12.8522	1/2:10:0,8,2:0:0:8,2:288,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chr03	729032	.	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chr03	741389	.	A	G	40828.1	PASS	AB=0.539095;ABP=61.0771;AC=40;AF=0.212766;AN=188;AO=2370;CIGAR=1X;DP=10192;DPB=10192;DPRA=1.00331;EPP=5149.4;EPPR=16981.8;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9333;MQMR=59.9655;NS=94;NUMALT=1;ODDS=0.553657;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84724;QR=280179;RO=7819;RPL=0;RPP=5149.4;RPPR=16981.8;RPR=2370;RUN=1;SAF=2370;SAP=5149.4;SAR=0;SRF=7819;SRP=16981.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:12,22:12:428:22:788:-59.9019,0,-28.6238	0/1:121:52,69:52:1857:69:2472:-186.309,0,-130.983	0/1:161:80,81:80:2853:81:2900:-212.768,0,-208.541	0/0:153:153,0:153:5500:0:0:0,-46.0576,-495.124	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.14	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:177:177,0:177:6337:0:0:0,-53.2823,-570.419	0/1:171:83,88:83:2968:88:3160:-233.141,0,-215.859	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/0:131:131,0:131:4708:0:0:0,-39.4349,-423.873	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:104:104,0:104:3732:0:0:0,-31.3071,-335.81	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.116	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:93:93,0:93:3348:0:0:0,-27.9958,-301.535	0/0:106:106,0:106:3747:0:0:0,-31.9092,-337.399	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:201:201,0:201:7212:0:0:0,-60.507,-649.026	0/0:195:195,0:195:6992:0:0:0,-58.7008,-629.314	0/1:122:25,97:25:892:97:3431:-272.264,0,-43.874	0/0:54:52,2:52:1868:2:72:0,-9.4189,-161.56	0/1:106:65,41:65:2336:41:1468:-100.507,0,-178.59	0/1:80:33,47:33:1184:47:1657:-125.333,0,-82.7859	0/1:374:147,227:147:5260:227:8087:-615.26,0,-360.949	0/0:280:280,0:280:10017:0:0:0,-84.2884,-901.437	0/1:48:28,20:28:1008:20:716:-50.3183,0,-76.5823	0/1:285:144,141:144:5168:141:5064:-370.109,0,-379.465	0/0:126:121,5:121:4344:5:176:0,-21.7448,-374.949	0/0:157:157,0:157:5621:0:0:0,-47.2617,-506.009	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:21:3,18:3:108:18:633:-50.9701,0,-3.75354	0/0:233:233,0:233:8348:0:0:0,-70.14,-751.324	0/0:242:242,0:242:8660:0:0:0,-72.8493,-779.394	0/1:97:62,35:62:2228:35:1237:-82.4324,0,-171.583	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:74:44,30:44:1561:30:1076:-74.8766,0,-118.503	0/1:45:21,24:21:752:24:852:-63.454,0,-54.4599	0/1:140:76,64:76:2728:64:2292:-163.84,0,-203.589	0/1:94:48,46:48:1724:46:1637:-119.32,0,-127.149	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.116	0/1:85:34,51:34:1208:51:1809:-137.502,0,-83.4385	0/1:154:68,86:68:2440:86:3073:-230.437,0,-173.496	0/0:164:164,0:164:5876:0:0:0,-49.3689,-528.95	0/0:121:121,0:121:4336:0:0:0,-36.4246,-390.414	0/1:192:86,106:86:3072:106:3797:-284.128,0,-218.911	0/0:118:118,0:118:4220:0:0:0,-35.5215,-379.981	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:119:66,53:66:2364:53:1881:-133.742,0,-177.196	0/0:55:54,1:54:1936:1:36:0,-12.9584,-170.918	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:195:97,98:97:3465:98:3508:-257.216,0,-253.36	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.605	0/1:9:1,8:1:36:8:273:-22.1905,0,-0.889005	0/1:14:6,8:6:216:8:273:-20.6858,0,-15.5761	0/1:74:37,37:37:1332:37:1328:-97.546,0,-97.9062	0/0:150:150,0:150:5373:0:0:0,-45.1545,-483.699	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:208:84,124:84:3016:124:4456:-338.594,0,-209.056	0/0:176:174,2:174:6260:2:72:0,-46.1446,-556.607	0/1:65:25,40:25:892:40:1425:-108.979,0,-61.0327	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.841	0/0:174:173,1:173:6196:1:36:0,-48.7809,-554.139	0/1:132:43,89:43:1540:89:3178:-246.508,0,-99.1571	0/0:37:36,1:36:1296:1:36:0,-7.53983,-113.346	0/1:109:51,58:51:1816:58:2080:-154.658,0,-130.909	0/1:91:55,36:55:1972:36:1296:-89.5502,0,-150.36	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.329	0/0:153:153,0:153:5476:0:0:0,-46.0576,-492.968	0/0:183:181,0:181:6476:0:0:0,-54.4864,-582.563	0/1:91:41,49:41:1456:49:1760:-131.223,0,-103.884	0/0:117:117,0:117:4192:0:0:0,-35.2205,-377.458	0/1:16:3,13:3:108:13:468:-37.6432,0,-5.25869	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/0:130:130,0:130:4676:0:0:0,-39.1339,-420.999	0/0:243:243,0:243:8716:0:0:0,-73.1503,-784.427	0/1:138:76,62:76:2728:62:2228:-159.239,0,-204.221	0/1:82:48,34:48:1720:34:1220:-85.4223,0,-130.401	0/1:107:50,57:50:1800:57:2044:-152.022,0,-130.072	0/1:194:105,89:105:3772:89:3196:-229.463,0,-281.278	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.708	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.187	0/1:89:33,56:33:1184:56:2008:-154.202,0,-80.0766	0/1:141:56,85:56:2012:85:3041:-231.468,0,-138.908	0/1:73:20,53:20:720:53:1908:-150.022,0,-43.1536	0/0:163:163,0:163:5833:0:0:0,-49.0679,-525.077	0/0:104:104,0:104:3732:0:0:0,-31.3071,-335.758
chr03	741416	.	G	A	171833	PASS	AB=0.457059;ABP=73.6907;AC=148;AF=0.787234;AN=188;AO=7792;CIGAR=1X;DP=10207;DPB=10207;DPRA=0;EPP=15821.2;EPPR=4892.7;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9636;MQMR=59.9304;NS=94;NUMALT=1;ODDS=0.546351;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278555;QR=86328;RO=2413;RPL=125;RPP=15854.8;RPPR=4892.7;RPR=7667;RUN=1;SAF=7788;SAP=16888.4;SAR=4;SRF=2413;SRP=5242.77;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:23,12:23:809:12:417:-27.3242,0,-61.4847	0/1:121:69,52:69:2472:52:1864:-131.615,0,-186.309	0/1:160:81,79:81:2889:79:2816:-205.513,0,-212.079	1/1:152:0,152:0:0:152:5433:-489.098,-45.7566,0	1/1:92:0,92:0:0:92:3277:-295.149,-27.6948,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:177:0,177:0:0:177:6313:-568.263,-53.2823,0	0/1:172:89,83:89:3176:83:2965:-215.286,0,-234.268	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	1/1:133:0,133:0:0:133:4761:-428.641,-40.037,0	1/1:87:0,87:0:0:87:3113:-280.395,-26.1896,0	1/1:104:0,104:0:0:104:3744:-336.889,-31.3071,0	1/1:100:0,100:0:0:100:3596:-323.836,-30.103,0	1/1:94:0,94:0:0:94:3364:-302.976,-28.2968,0	1/1:93:0,93:0:0:93:3348:-301.535,-27.9958,0	1/1:102:0,102:0:0:102:3617:-325.731,-30.7051,0	1/1:80:2,78:2:68:78:2784:-244.341,-17.6247,0	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:49:0,49:0:0:49:1730:-155.981,-14.7505,0	1/1:199:0,199:0:0:199:7117:-640.481,-59.905,0	1/1:193:0,193:0:0:193:6912:-622.118,-58.0988,0	0/1:121:96,25:96:3425:25:892:-44.1751,0,-272.01	1/1:54:2,52:2:72:52:1872:-161.92,-9.4189,0	0/1:105:41,64:41:1468:64:2296:-175.293,0,-100.808	0/1:79:46,33:46:1637:33:1184:-83.0869,0,-123.835	0/1:380:229,151:229:8171:151:5412:-372.816,0,-621.007	1/1:280:0,280:0:0:280:10056:-904.942,-84.2884,0	0/1:47:20,27:20:720:27:955:-72.1156,0,-50.9804	0/1:290:145,145:145:5216:145:5186:-379.578,0,-382.277	1/1:128:6,122:6:212:122:4361:-373.238,-19.107,0	1/1:157:0,157:0:0:157:5605:-504.553,-47.2617,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:22:18,4:18:648:4:144:-6.68005,0,-52.0259	1/1:229:0,229:0:0:229:8205:-738.456,-68.9359,0	1/1:245:0,244:0:0:244:8723:-784.836,-73.4513,0	0/1:99:35,64:35:1243:64:2289:-176.467,0,-82.3719	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:77:33,44:33:1184:44:1565:-117.96,0,-83.689	0/1:50:29,21:29:1040:21:756:-53.3157,0,-78.8629	0/1:141:65,76:65:2325:76:2697:-200.499,0,-167.026	0/1:93:46,47:46:1656:47:1687:-124.121,0,-121.333	1/1:78:0,78:0:0:78:2770:-249.536,-23.4803,0	0/1:87:52,35:52:1849:35:1256:-87.1557,0,-140.498	0/1:154:86,68:86:3081:68:2436:-173.137,0,-231.157	1/1:162:0,162:0:0:162:5754:-517.978,-48.7669,0	1/1:121:0,121:0:0:121:4306:-387.715,-36.4246,0	0/1:195:109,86:109:3920:86:3088:-219.446,0,-294.29	1/1:118:0,118:0:0:118:4202:-378.359,-35.5215,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:119:53,66:53:1904:66:2360:-176.836,0,-135.811	1/1:56:1,55:1:36:55:1965:-173.525,-13.2594,0	1/1:20:0,19:0:0:19:680:-61.3118,-5.71957,0	0/1:194:100,94:100:3562:94:3368:-244.936,0,-262.376	1/1:60:0,60:0:0:60:2129:-191.877,-18.0618,0	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1937	0/1:14:8,6:8:273:6:216:-15.5761,0,-20.6858	0/1:75:37,38:37:1332:38:1345:-98.7709,0,-97.6051	1/1:150:0,150:0:0:150:5384:-484.69,-45.1545,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:208:126,82:126:4513:82:2910:-199.519,0,-343.721	1/1:177:3,174:3:108:174:6230:-550.67,-43.2071,0	0/1:65:39,26:39:1400:26:932:-64.6319,0,-106.732	1/1:83:0,83:0:0:83:2964:-266.989,-24.9855,0	1/1:173:1,172:1:36:172:6157:-550.618,-48.4799,0	0/1:131:88,43:88:3141:43:1510:-96.7551,0,-243.479	1/1:37:1,36:1:36:36:1284:-112.265,-7.53984,0	0/1:113:60,53:60:2126:53:1881:-135.55,0,-157.589	0/1:88:35,53:35:1256:53:1889:-143.795,0,-86.8546	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:74:0,74:0:0:74:2664:-240.005,-22.2762,0	1/1:81:0,81:0:0:81:2908:-261.927,-24.3834,0	1/1:152:1,151:1:36:151:5420:-484.33,-42.1583,0	1/1:181:0,181:0:0:181:6466:-582.023,-54.4864,0	0/1:90:51,39:51:1821:39:1400:-99.2065,0,-137.068	1/1:119:0,119:0:0:119:4218:-379.796,-35.8226,0	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	1/1:97:0,97:0:0:97:3465:-312.061,-29.1999,0	1/1:128:0,128:0:0:128:4592:-413.444,-38.5318,0	1/1:238:0,238:0:0:238:8511:-765.987,-71.6451,0	0/1:140:65,75:65:2317:75:2696:-200.74,0,-166.644	0/1:85:37,48:37:1332:48:1724:-129.858,0,-94.5948	0/1:110:60,50:60:2156:50:1796:-128.809,0,-161.194	0/1:197:91,106:91:3276:106:3760:-279.298,0,-235.756	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	1/1:79:0,79:0:0:79:2818:-253.85,-23.7814,0	1/1:86:0,86:0:0:86:3092:-278.504,-25.8886,0	0/1:90:57,33:57:2037:33:1169:-78.4226,0,-156.508	0/1:144:85,59:85:3045:59:2104:-146.277,0,-230.924	0/1:74:55,19:55:1976:19:680:-39.2529,0,-155.838	1/1:159:0,159:0:0:159:5674:-510.778,-47.8638,0	1/1:104:0,104:0:0:104:3716:-334.566,-31.3071,0
chr03	741905	.	C	A	21746.5	PASS	AB=0.475142;ABP=18.1242;AC=39;AF=0.207447;AN=188;AO=1341;CIGAR=1X;DP=7231;DPB=7231;DPRA=0.900621;EPP=2914.95;EPPR=12788.6;GTI=1;LEN=1;MEANALT=1;MQM=49.7554;MQMR=59.4506;NS=94;NUMALT=1;ODDS=6.76823;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48071;QR=210209;RO=5888;RPL=1341;RPP=2914.95;RPPR=12788.6;RPR=0;RUN=1;SAF=0;SAP=2914.95;SAR=1341;SRF=0;SRP=12788.6;SRR=5888;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:15,10:15:540:10:356:-24.7577,0,-41.4108	0/1:50:26,24:26:936:24:860:-61.1607,0,-69.4916	0/1:71:37,34:37:1320:34:1224:-88.2109,0,-97.6705	0/0:128:127,0:127:4525:0:0:0,-38.2308,-406.957	0/0:41:41,0:41:1434:0:0:0,-12.3422,-129.352	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4082	0/0:116:116,0:116:4140:0:0:0,-34.9195,-372.205	0/1:76:33,43:33:1169:43:1532:-112.895,0,-82.6256	0/0:112:112,0:112:4000:0:0:0,-33.7154,-360.148	0/0:94:93,0:93:3313:0:0:0,-27.9958,-297.952	0/0:121:121,0:121:4319:0:0:0,-36.4246,-388.75	0/0:120:120,0:120:4300:0:0:0,-36.1236,-386.88	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.04	0/0:176:176,0:176:6296:0:0:0,-52.9813,-566.123	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.873	0/0:90:90,0:90:3207:0:0:0,-27.0927,-288.779	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.89	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.166	0/0:67:67,0:67:2383:0:0:0,-20.169,-214.717	0/0:116:116,0:116:4148:0:0:0,-34.9195,-373.175	0/0:114:114,0:114:4065:0:0:0,-34.3174,-365.993	0/1:44:12,32:12:432:32:1144:-89.2396,0,-25.9582	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.021	0/1:48:31,17:31:1108:17:612:-40.7256,0,-85.5816	0/1:74:43,31:43:1540:31:1112:-76.923,0,-116.617	0/1:167:97,70:97:3465:70:2512:-174.007,0,-261.698	0/0:133:133,0:133:4756:0:0:0,-40.037,-428.02	0/1:35:23,12:23:828:12:432:-28.5566,0,-64.2965	0/1:108:59,49:59:2108:49:1752:-124.121,0,-157.441	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.57	0/1:9:4,5:4:144:5:180:-13.7885,0,-10.6043	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.238	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:10:10,0:10:352:0:0:0,-3.0103,-31.9331	0/0:20:19,1:19:657:1:36:0,-2.43137,-55.8521	0/0:233:233,0:233:8327:0:0:0,-70.14,-749.302	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.654	0/1:93:46,47:46:1648:47:1683:-123.094,0,-120.613	0/1:7:6,1:6:212:1:36:-0.713871,0,-17.3176	0/1:98:56,42:56:2008:42:1504:-105.758,0,-151.481	0/1:58:24,34:24:864:34:1224:-92.0304,0,-60.6228	0/1:62:33,29:33:1172:29:1040:-74.6304,0,-87.1014	0/1:75:38,37:38:1360:37:1332:-96.5217,0,-100.104	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.162	0/1:63:19,44:19:676:44:1572:-122.068,0,-41.5735	0/1:63:35,28:35:1244:28:1004:-71.1395,0,-93.2998	0/0:88:88,0:88:3083:0:0:0,-26.4906,-277.55	0/0:77:77,0:77:2744:0:0:0,-23.1793,-246.99	0/1:62:37,25:37:1319:25:900:-61.8847,0,-100.334	0/0:108:108,0:108:3849:0:0:0,-32.5112,-346.422	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:83:45,38:45:1620:38:1364:-97.7698,0,-121.083	0/0:51:51,0:51:1801:0:0:0,-15.3525,-162.352	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8554	0/1:68:38,30:38:1356:30:1080:-76.0493,0,-101.87	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8564	0/1:12:8,4:8:288:4:144:-9.62908,0,-22.6495	0/1:20:10,10:10:360:10:351:-25.5323,0,-26.7237	0/1:98:66,32:66:2368:32:1137:-72.4553,0,-183.845	0/0:150:150,0:150:5371:0:0:0,-45.1545,-482.197	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:96:55,41:55:1972:41:1460:-101.545,0,-148.814	0/0:129:128,1:128:4550:1:36:0,-35.2498,-405.73	0/1:58:35,23:35:1252:23:824:-56.7847,0,-95.5253	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:110:110,0:110:3913:0:0:0,-33.1133,-350.88	0/1:174:61,113:61:2188:113:4048:-309.586,0,-144.646	0/0:115:115,0:115:4128:0:0:0,-34.6184,-370.613	0/1:37:18,19:18:648:19:680:-50.2485,0,-47.5138	0/1:56:29,27:29:1032:27:968:-69.492,0,-76.0478	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.0272	0/0:128:128,0:128:4560:0:0:0,-38.5318,-410.182	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.269	0/0:206:206,0:206:7306:0:0:0,-62.0122,-657.43	0/0:80:79,1:79:2828:1:36:0,-20.4993,-251.112	0/1:45:21,24:21:756:24:856:-63.4325,0,-54.8118	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.81	0/1:12:8,4:8:284:4:144:-9.66779,0,-22.2793	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.312	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.61	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.552	0/1:58:36,22:36:1288:22:792:-52.799,0,-98.7222	0/1:98:42,56:42:1508:56:2012:-149.989,0,-106.486	0/1:49:29,20:29:1031:20:720:-50.0707,0,-78.338	0/1:133:62,71:62:2220:71:2552:-188.002,0,-160.013	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.626	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.496	0/0:97:97,0:97:3458:0:0:0,-29.1999,-311.373	0/1:133:84,49:84:3020:49:1764:-118.262,0,-231.53	0/1:224:129,95:129:4603:95:3404:-236.908,0,-346.94	0/1:74:28,46:28:1004:46:1652:-125.837,0,-68.3996	0/0:152:152,0:152:5371:0:0:0,-45.7566,-483.43	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.557
chr03	795304	.	G	A	82788.9	PASS	AB=0.554909;ABP=169.459;AC=38;AF=0.204301;AN=186;AO=3551;CIGAR=1X;DP=15265;DPB=15265;DPRA=1.09791;EPP=7705.23;EPPR=25309.5;GTI=3;LEN=1;MEANALT=1.10417;MQM=59.9696;MQMR=59.993;NS=93;NUMALT=1;ODDS=1.96363;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126651;QR=417254;RO=11702;RPL=1894;RPP=37.3582;RPPR=111.891;RPR=1657;RUN=1;SAF=1893;SAP=36.7809;SAR=1658;SRF=5456;SRP=118.821;SRR=6246;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:108:40,68:40:1415:68:2432:-186.624,0,-95.1353	0/1:121:41,80:41:1455:80:2855:-220.763,0,-94.8206	0/1:179:57,122:57:2035:122:4350:-337.791,0,-129.537	0/0:371:371,0:371:13196:0:0:0,-111.682,-1187.45	0/0:95:93,2:93:3301:2:72:0,-21.7611,-290.472	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:123:123,0:123:4370:0:0:0,-37.0267,-393.476	0/1:285:91,194:91:3255:194:6923:-537.341,0,-207.377	0/0:120:117,2:117:4157:2:72:0,-29.3457,-367.477	0/0:196:196,0:196:7023:0:0:0,-59.0019,-632.131	0/0:121:121,0:121:4288:0:0:0,-36.4246,-386.099	0/0:137:137,0:137:4849:0:0:0,-41.2411,-436.509	0/0:111:111,0:111:3892:0:0:0,-33.4143,-350.471	0/0:130:130,0:130:4659:0:0:0,-39.1339,-419.471	0/0:193:193,0:193:6875:0:0:0,-58.0988,-618.817	0/0:157:157,0:157:5589:0:0:0,-47.2617,-503.132	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/0:23:23,0:23:794:0:0:0,-6.92369,-71.7733	0/0:190:190,0:190:6807:0:0:0,-57.1957,-612.7	0/0:390:388,1:388:13823:1:36:0,-113.862,-1240.26	0/1:122:47,75:47:1675:75:2675:-204.269,0,-114.311	0/0:201:199,0:199:7107:0:0:0,-59.905,-639.331	0/1:96:61,35:61:2171:35:1256:-84.4464,0,-166.757	0/1:150:58,92:58:2071:92:3280:-250.264,0,-141.506	0/1:545:260,284:260:9303:284:10110:-745.717,0,-673.116	0/0:402:401,0:401:14293:0:0:0,-120.713,-1285.77	0/1:74:32,42:32:1123:42:1489:-112.026,0,-79.1009	0/1:577:286,290:286:10222:290:10348:-757.486,0,-746.156	0/0:227:218,9:218:7786:9:324:0,-38.828,-671.266	0/0:184:183,0:183:6527:0:0:0,-55.0885,-587.156	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:384:384,0:384:13669:0:0:0,-115.596,-1230	0/0:162:161,1:161:5749:1:36:0,-45.1686,-513.928	0/1:65:21,44:21:756:44:1571:-121.486,0,-48.8003	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:164:93,71:93:3339:71:2512:-176.962,0,-251.357	0/1:48:26,22:26:936:22:787:-56.705,0,-70.11	0/1:357:166,191:166:5905:191:6782:-502.86,0,-424.094	0/1:155:78,77:78:2791:77:2740:-200.181,0,-204.77	0/0:156:156,0:156:5544:0:0:0,-46.9607,-499.087	0/1:207:106,101:106:3788:101:3607:-262.523,0,-278.806	0/0:98:96,0:96:3419:0:0:0,-28.8989,-307.565	0/0:304:304,0:304:10871:0:0:0,-91.5131,-978.292	0/0:163:163,0:163:5802:0:0:0,-49.0679,-521.278	0/1:264:128,136:128:4556:136:4851:-357.273,0,-330.735	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:122:39,83:39:1400:83:2976:-231.347,0,-89.5735	0/0:125:125,0:125:4462:0:0:0,-37.6287,-401.75	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:278:125,153:125:4435:153:5500:-411.437,0,-315.639	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:20:9,11:9:320:11:387:-29.1453,0,-23.1218	0/1:171:90,81:90:3220:81:2891:-208.95,0,-238.546	0/0:185:185,0:185:6571:0:0:0,-55.6905,-591.475	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:379:156,223:156:5583:223:7977:-603.862,0,-388.502	0/0:431:427,4:427:15257:4:140:0,-116.799,-1359.9	0/1:160:71,89:71:2556:89:3184:-238.619,0,-182.125	0/0:154:154,0:154:5493:0:0:0,-46.3586,-494.497	0/0:400:400,0:400:14242:0:0:0,-120.412,-1281.53	0/1:268:86,182:86:3076:182:6496:-504.048,0,-196.393	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/0:66:66,0:66:2354:0:0:0,-19.868,-212.118	0/1:106:49,57:49:1764:57:2048:-152.682,0,-127.135	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.61	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:80:80,0:80:2863:0:0:0,-24.0824,-257.907	0/0:344:344,0:344:12228:0:0:0,-103.554,-1100.36	0/0:329:329,0:329:11715:0:0:0,-99.0389,-1054.22	0/1:143:45,98:45:1616:98:3460:-268.564,0,-102.683	0/0:78:77,1:77:2747:1:36:0,-19.8821,-243.874	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:211:210,1:210:7466:1:36:0,-59.9191,-668.389	0/0:138:135,2:135:4815:2:72:0,-34.7642,-426.67	0/0:411:410,0:410:14658:0:0:0,-123.422,-1318.6	0/1:133:54,79:54:1935:79:2836:-215.441,0,-134.389	0/1:187:93,94:93:3283:94:3357:-246.053,0,-239.398	0/1:137:68,69:68:2412:69:2478:-182.032,0,-176.094	0/1:288:153,135:153:5469:135:4769:-342.669,0,-405.64	0/0:26:25,1:25:896:1:36:0,-4.2285,-77.3621	0/0:84:84,0:84:2965:0:0:0,-25.2865,-267.081	0/0:90:90,0:90:3189:0:0:0,-27.0927,-287.232	0/1:94:46,48:46:1648:48:1715:-126.338,0,-120.312	0/1:160:78,82:78:2782:82:2944:-217.029,0,-202.455	0/1:160:61,99:61:2173:99:3489:-266.056,0,-147.67	0/0:318:318,0:318:11363:0:0:0,-95.7275,-1022.55	0/0:286:286,0:286:10248:0:0:0,-86.0946,-922.242
chr03	826599	.	T	C	26584.8	PASS	AB=0.559721;ABP=87.3035;AC=39;AF=0.209677;AN=186;AO=1536;CIGAR=1X;DP=6630;DPB=6630;DPRA=1.07438;EPP=3338.39;EPPR=10621.6;GTI=2;LEN=1;MEANALT=1.02326;MQM=59.1947;MQMR=59.7535;NS=93;NUMALT=1;ODDS=0.397527;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54959;QR=182527;RO=5092;RPL=1536;RPP=3338.39;RPPR=10621.6;RPR=0;RUN=1;SAF=0;SAP=3338.39;SAR=1536;SRF=0;SRP=11060.1;SRR=5092;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:9,29:9:324:29:1035:-82.0029,0,-18.0585	0/1:68:35,33:35:1244:33:1184:-86.3348,0,-91.7865	0/1:113:48,65:48:1720:65:2318:-174.528,0,-121.069	0/0:224:223,1:223:7985:1:36:0,-63.8324,-714.871	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8821	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.274	0/1:69:19,50:19:676:50:1792:-140.456,0,-40.3969	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.139	0/0:114:112,2:112:4012:2:72:0,-27.4807,-354.403	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.585	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.19	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.328	0/0:47:46,0:46:1656:0:0:0,-13.8474,-148.969	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.373	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.86	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5975	0/0:122:122,0:122:4388:0:0:0,-36.7257,-395.067	0/0:132:132,0:132:4728:0:0:0,-39.736,-425.662	0/1:78:18,60:18:644:60:2152:-170.311,0,-34.8103	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.735	0/1:37:19,18:19:680:18:648:-47.5138,0,-50.3887	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:201:90,110:90:3224:110:3952:-294.956,0,-229.816	0/0:162:162,0:162:5769:0:0:0,-48.7669,-519.31	0/1:33:15,18:15:540:18:644:-48.3566,0,-38.9943	0/1:218:95,123:95:3404:123:4405:-330.946,0,-240.925	0/0:54:52,2:52:1868:2:72:0,-9.4189,-161.554	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.148	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	.:.:.:.:.:.:.:.	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:131:131,0:131:4708:0:0:0,-39.4349,-423.866	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.822	0/1:54:28,26:28:1004:26:936:-68.2862,0,-74.4202	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:66:34,32:34:1216:32:1140:-83.0412,0,-89.8622	0/1:38:21,17:21:752:17:612:-43.9743,0,-56.5589	0/1:78:44,34:44:1576:34:1220:-86.6127,0,-118.643	0/1:48:24,24:24:864:24:860:-63.2356,0,-63.6249	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:80:35,45:35:1260:45:1590:-119.005,0,-89.6231	0/0:39:36,3:36:1284:3:108:0,-1.69033,-105.789	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.06	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.62	0/1:98:42,56:42:1496:56:2004:-151.082,0,-105.409	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.584	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0667	0/1:75:32,43:32:1148:43:1548:-116.983,0,-81.0444	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.938	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:106:39,67:39:1404:67:2381:-182.542,0,-94.7493	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:9:6,3:6:201:3:108:-7.36465,0,-15.6995	0/1:22:8,14:8:284:14:504:-39.0702,0,-19.2807	0/1:39:14,25:14:504:25:896:-69.1927,0,-33.9579	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.009	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/1:228:129,99:129:4617:99:3548:-250.772,0,-347.006	0/0:117:117,0:117:4208:0:0:0,-35.2205,-378.882	0/1:29:19,10:19:684:10:351:-23.1968,0,-53.1605	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.931	0/0:114:114,0:114:4074:0:0:0,-34.3174,-366.811	0/1:129:60,69:60:2156:69:2472:-183.865,0,-155.454	0/0:29:27,2:27:968:2:72:0,-1.89315,-80.6006	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:48:16,32:16:559:32:1152:-89.5286,0,-36.1849	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.768	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.567	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.947	0/0:194:194,0:194:6948:0:0:0,-58.3998,-625.367	0/1:51:14,37:14:504:37:1301:-102.037,0,-30.3456	0/0:93:93,0:93:3313:0:0:0,-27.9958,-298.386	0/1:16:8,8:8:288:8:284:-21.0865,0,-21.3436	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.117	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.548	0/0:137:137,0:137:4916:0:0:0,-41.2411,-442.542	0/1:45:16,29:16:576:29:1031:-79.5113,0,-38.6286	0/1:72:38,34:38:1360:34:1208:-87.3519,0,-101.018	0/1:51:28,23:28:1000:23:820:-58.742,0,-74.9628	0/1:109:47,62:47:1684:62:2219:-167.122,0,-118.791	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.058	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.864	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.014	0/1:40:21,19:21:756:19:676:-49.1268,0,-56.326	0/1:156:65,91:65:2336:91:3268:-247.049,0,-163.506	0/1:139:43,96:43:1548:96:3444:-268.276,0,-97.7699	0/0:223:223,0:223:8005:0:0:0,-67.1297,-720.247	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.106
chr03	846207	.	G	A	14947.8	PASS	AB=0.401791;ABP=152.718;AC=32;AF=0.170213;AN=188;AO=737;CIGAR=1X;DP=6142;DPB=6142;DPRA=0.832493;EPP=20.4793;EPPR=19.2415;GTI=2;LEN=1;MEANALT=1;MQM=59.9647;MQMR=59.9948;NS=94;NUMALT=1;ODDS=6.20407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26408;QR=192432;RO=5405;RPL=1;RPP=1594.71;RPPR=7079.8;RPR=736;RUN=1;SAF=331;SAP=19.5836;SAR=406;SRF=3407;SRP=800.602;SRR=1998;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/1:36:24,12:24:856:12:432:-28.3841,0,-66.524	0/1:53:28,25:28:1000:25:900:-65.3664,0,-74.3608	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:37:27,10:27:968:10:351:-20.7886,0,-76.2993	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:29:28,1:28:1000:1:32:0,-5.53056,-87.1161	0/0:174:174,0:174:6199:0:0:0,-52.3792,-558.01	0/0:124:124,0:124:4393:0:0:0,-37.3277,-395.546	0/0:139:139,0:139:4963:0:0:0,-41.8432,-446.82	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.947	0/0:105:105,0:105:3742:0:0:0,-31.6081,-336.981	0/0:98:97,1:97:3472:1:36:0,-25.9027,-309.094	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.553	0/0:35:35,0:35:1234:0:0:0,-10.536,-111.363	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/1:11:2,9:2:68:9:324:-26.1945,0,-3.14638	0/0:37:37,0:37:1305:0:0:0,-11.1381,-117.749	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/1:42:20,22:20:716:22:792:-58.9624,0,-52.1245	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.945	0/1:43:19,24:19:672:24:860:-64.7775,0,-47.8625	0/1:47:26,21:26:928:21:756:-54.2188,0,-69.6898	0/1:9:8,1:8:288:1:32:-0.490043,0,-23.5581	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:83:83,0:83:2944:0:0:0,-24.9855,-265.196	0/0:85:85,0:85:3024:0:0:0,-25.5875,-272.392	0/0:151:151,0:151:5401:0:0:0,-45.4555,-486.219	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.747	0/0:243:243,0:243:8645:0:0:0,-73.1503,-778.05	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/1:114:68,46:68:2414:46:1639:-113.481,0,-183.198	0/0:93:93,0:93:3321:0:0:0,-27.9958,-299.107	0/1:42:24,18:24:851:18:644:-45.6473,0,-64.2662	0/1:81:65,16:65:2305:16:576:-27.7916,0,-183.326	0/1:43:19,24:19:684:24:848:-63.6931,0,-48.946	0/1:83:56,27:56:1999:27:961:-61.8077,0,-155.198	0/0:84:84,0:84:2979:0:0:0,-25.2865,-268.344	0/1:27:13,14:13:453:14:504:-37.5703,0,-32.9718	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:117:117,0:117:4164:0:0:0,-35.2205,-374.943	0/1:20:13,7:13:464:7:248:-16.6436,0,-36.0769	0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6803	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:34:23,11:23:812:11:396:-25.7477,0,-63.1659	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:26:14,12:14:500:12:428:-31.032,0,-37.5094	0/0:109:109,0:109:3850:0:0:0,-32.8123,-346.697	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:139:129,10:129:4594:10:356:0,-9.46192,-381.242	0/0:26:25,1:25:896:1:36:0,-4.2285,-77.3621	0/1:21:12,9:12:415:9:324:-23.1796,0,-31.3587	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:32:31,1:31:1093:1:36:0,-6.03468,-95.0794	0/1:32:9,23:9:320:23:828:-65.2112,0,-19.5094	0/0:220:220,0:220:7846:0:0:0,-66.2266,-706.171	0/0:15:15,0:15:524:0:0:0,-4.51545,-47.4896	0/1:68:39,29:39:1374:29:1044:-73.8048,0,-103.487	0/0:54:54,0:54:1913:0:0:0,-16.2556,-172.445	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:34:33,1:33:1184:1:36:0,-6.63674,-103.27	0/1:25:19,6:19:684:6:212:-11.899,0,-54.3646	0/0:45:45,0:45:1577:0:0:0,-13.5463,-142.218	0/0:51:49,2:49:1756:2:72:0,-8.51581,-151.487	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:38:37,1:37:1314:1:36:0,-7.84086,-114.962	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.647	0/1:83:36,47:36:1280:47:1692:-127.581,0,-90.5177	0/1:88:51,37:51:1799:37:1328:-93.3316,0,-135.687	0/1:101:52,49:52:1860:49:1760:-128.28,0,-137.276	0/1:172:83,89:83:2955:89:3185:-235.096,0,-214.407	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.87	0/0:100:100,0:100:3526:0:0:0,-30.103,-317.55	0/0:104:104,0:104:3710:0:0:0,-31.3071,-334.102	0/1:132:112,20:112:4007:20:720:-25.3928,0,-321.083	0/1:165:139,26:139:4940:26:936:-34.8895,0,-395.082	0/1:74:27,47:27:959:47:1684:-129.571,0,-64.3492	0/0:293:293,0:293:10357:0:0:0,-88.2018,-932.062	0/0:172:171,1:171:6116:1:36:0,-48.1789,-546.943
chr03	846628	.	C	T	155261	PASS	AB=0.517909;ABP=12.6546;AC=149;AF=0.792553;AN=188;AO=7196;CIGAR=1X;DP=8884;DPB=8884;DPRA=47.7527;EPP=15628.9;EPPR=3666.28;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9754;MQMR=59.9715;NS=94;NUMALT=1;ODDS=0.399438;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257189;QR=60055;RO=1687;RPL=0;RPP=15628.9;RPPR=3666.28;RPR=7196;RUN=1;SAF=0;SAP=15628.9;SAR=7196;SRF=0;SRP=3666.28;SRR=1687;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:112:54,58:54:1916:58:2076:-153.395,0,-138.999	0/1:89:45,44:45:1612:44:1584:-116.06,0,-118.491	1/1:182:0,182:0:0:182:6504:-585.439,-54.7875,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:59:0,59:0:0:59:2115:-190.616,-17.7608,0	1/1:121:0,121:0:0:121:4322:-389.152,-36.4246,0	0/1:189:92,97:92:3268:97:3471:-255.08,0,-237.445	1/1:98:0,98:0:0:98:3520:-317.009,-29.5009,0	1/1:128:0,128:0:0:128:4573:-411.732,-38.5318,0	1/1:60:0,60:0:0:60:2148:-193.584,-18.0618,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	1/1:107:1,106:1:36:106:3789:-337.61,-28.6119,0	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	1/1:58:0,58:0:0:58:2078:-187.29,-17.4597,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:182:2,180:2:72:180:6411:-570.239,-47.9507,0	1/1:106:0,106:0:0:106:3791:-341.387,-31.9092,0	0/1:94:45,49:45:1612:49:1760:-130.387,0,-117.073	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:119:47,72:47:1653:72:2553:-194.197,0,-113.233	0/1:73:23,50:23:824:50:1792:-139.587,0,-52.5081	0/1:323:157,166:157:5574:166:5910:-434.778,0,-404.553	1/1:204:0,204:0:0:204:7294:-656.509,-61.4101,0	0/1:23:13,10:13:460:10:360:-25.8206,0,-34.8117	0/1:224:130,94:130:4660:94:3380:-236.984,0,-352.13	1/1:210:7,203:7:252:203:7259:-630.332,-40.1873,0	1/1:169:0,169:0:0:169:5977:-538.039,-50.8741,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:25:8,17:8:273:17:608:-47.5263,0,-17.3744	1/1:146:0,146:0:0:146:5231:-470.927,-43.9504,0	1/1:252:0,252:0:0:252:9015:-811.326,-75.8596,0	0/1:60:32,28:32:1152:28:1004:-72.6141,0,-85.9283	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:142:72,70:72:2567:70:2496:-182.145,0,-188.533	0/1:35:21,14:21:752:14:504:-35.162,0,-57.4702	0/1:155:75,80:75:2656:80:2876:-212.416,0,-192.625	0/1:47:26,21:26:920:21:747:-53.4059,0,-68.9686	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:120:58,62:58:2069:62:2205:-162.586,0,-150.355	1/1:188:0,188:0:0:188:6724:-605.198,-56.5936,0	1/1:144:0,144:0:0:144:5127:-461.556,-43.3483,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:147:82,65:82:2936:65:2324:-165.169,0,-220.223	1/1:255:0,255:0:0:255:9148:-823.29,-76.7627,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:128:55,73:55:1968:73:2616:-197.156,0,-138.863	1/1:63:0,63:0:0:63:2260:-203.659,-18.9649,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:137:77,60:77:2729:60:2137:-151.355,0,-204.611	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:112:46,66:46:1639:66:2356:-178.584,0,-114.083	1/1:96:1,95:1:36:95:3395:-302.167,-25.3006,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:161:95,66:95:3375:66:2355:-163.742,0,-255.497	1/1:241:5,236:5:180:236:8449:-743.858,-55.9962,0	0/1:74:15,59:15:536:59:2112:-168.073,0,-26.2986	1/1:54:0,54:0:0:54:1917:-172.805,-16.2556,0	1/1:175:1,174:1:36:174:6194:-553.959,-49.082,0	0/1:146:72,74:72:2555:74:2652:-194.973,0,-186.25	1/1:29:0,29:0:0:29:1023:-92.3817,-8.72987,0	1/1:80:0,80:0:0:80:2859:-257.547,-24.0824,0	0/1:78:31,47:31:1116:47:1680:-128.004,0,-77.2714	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:127:0,127:0:0:127:4532:-408.046,-38.2308,0	1/1:59:0,59:0:0:59:2097:-188.984,-17.7608,0	1/1:249:0,249:0:0:249:8911:-801.961,-74.9565,0	1/1:107:0,107:0:0:107:3828:-344.717,-32.2102,0	0/1:120:53,67:53:1883:67:2366:-177.072,0,-133.624	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	0/1:6:4,2:4:125:2:72:-5.03054,0,-9.75199	1/1:105:0,105:0:0:105:3766:-339.139,-31.6082,0	1/1:66:0,66:0:0:66:2345:-211.309,-19.868,0	1/1:223:0,223:0:0:223:7973:-717.588,-67.1297,0	0/1:69:30,39:30:1072:39:1394:-104.988,0,-76.0214	0/1:56:21,34:21:732:34:1224:-93.5506,0,-49.2827	0/1:59:27,32:27:953:32:1144:-85.5087,0,-68.3225	0/1:105:48,57:48:1708:57:2032:-151.544,0,-122.398	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	1/1:69:0,69:0:0:69:2450:-220.752,-20.7711,0	1/1:74:0,74:0:0:74:2620:-236.047,-22.2762,0	0/1:50:23,27:23:828:27:953:-71.0318,0,-59.7926	0/1:86:33,53:33:1179:53:1895:-144.939,0,-80.5286	0/1:49:36,13:36:1277:13:468:-27.7092,0,-100.481	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0
chr03	846651	.	C	T	26716.4	PASS	AB=0.479826;ABP=15.1888;AC=39;AF=0.209677;AN=186;AO=1673;CIGAR=1X;DP=8862;DPB=8862;DPRA=1.10512;EPP=3635.88;EPPR=15585.5;GTI=3;LEN=1;MEANALT=1.09091;MQM=59.951;MQMR=59.9855;NS=93;NUMALT=1;ODDS=0.545001;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59011;QR=256847;RO=7184;RPL=0;RPP=3635.88;RPPR=15585.5;RPR=1673;RUN=1;SAF=0;SAP=3635.88;SAR=1673;SRF=0;SRP=15602.9;SRR=7184;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:7,5:7:244:5:172:-12.2056,0,-18.6871	0/1:112:57,54:57:2029:54:1901:-137.592,0,-149.107	0/1:91:45,46:45:1620:46:1615:-118.054,0,-118.696	0/0:181:181,0:181:6456:0:0:0,-54.4864,-581.122	0/0:61:60,1:60:2123:1:36:0,-14.7646,-187.737	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.298	0/0:122:122,0:122:4369:0:0:0,-36.7257,-393.38	0/1:186:96,90:96:3448:90:3169:-229.445,0,-254.54	0/0:97:97,0:97:3492:0:0:0,-29.1999,-314.489	0/0:126:126,0:126:4505:0:0:0,-37.9298,-405.617	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.542	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.832	0/0:107:107,0:107:3798:0:0:0,-32.2102,-342.017	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.657	0/0:59:59,0:59:2106:0:0:0,-17.7608,-189.808	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:64:64,0:64:2295:0:0:0,-19.2659,-206.81	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.374	0/0:182:180,2:180:6416:2:72:0,-47.9507,-570.688	0/0:102:102,0:102:3619:0:0:0,-30.7051,-325.915	0/1:95:55,40:55:1960:40:1420:-99.4996,0,-148.078	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:120:75,45:75:2658:45:1555:-104.116,0,-203.343	0/1:69:46,23:46:1633:23:797:-51.2748,0,-126.486	0/1:318:161,157:161:5738:157:5565:-404.762,0,-420.808	0/0:207:207,0:207:7410:0:0:0,-62.3132,-666.945	0/1:23:10,13:10:360:13:464:-35.1738,0,-25.8206	0/1:221:95,126:95:3416:126:4434:-332.709,0,-241.125	0/0:209:202,7:202:7220:7:248:0,-40.2511,-627.189	0/0:167:167,0:167:5975:0:0:0,-50.272,-537.851	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:21:14,7:14:496:7:244:-15.9778,0,-38.6526	0/0:143:143,0:143:5119:0:0:0,-43.0473,-460.852	0/0:252:252,0:252:9039:0:0:0,-75.8596,-813.484	0/1:62:29,33:29:1040:33:1172:-87.1236,0,-75.2505	.:.:.:.:.:.:.:.	0/1:146:72,74:72:2580:74:2591:-189.491,0,-188.499	0/1:36:14,22:14:504:22:792:-60.7686,0,-34.861	0/1:152:79,73:79:2821:73:2585:-187.139,0,-208.371	0/1:46:21,25:21:752:25:888:-66.3916,0,-54.1589	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/1:124:65,58:65:2307:58:2056:-148.073,0,-170.652	0/0:183:183,0:183:6530:0:0:0,-55.0885,-587.744	0/0:145:145,0:145:5212:0:0:0,-43.6493,-469.2	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:147:65,82:65:2331:82:2862:-213.567,0,-165.797	0/0:256:256,0:256:9181:0:0:0,-77.0637,-826.257	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:128:72,56:72:2584:56:1976:-139.58,0,-194.277	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:140:60,80:60:2156:80:2791:-209.289,0,-152.163	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:22:9,13:9:324:13:464:-35.4748,0,-22.8832	0/1:112:67,45:67:2396:45:1589:-109.583,0,-182.182	0/0:94:93,1:93:3314:1:32:0,-25.0975,-295.279	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:160:66,93:66:2359:93:3298:-248.81,0,-164.344	0/0:245:238,6:238:8535:6:208:0,-54.6217,-749.106	0/1:75:59,16:59:2107:16:549:-27.1552,0,-167.321	0/0:51:51,0:51:1821:0:0:0,-15.3525,-164.169	0/0:176:175,1:175:6218:1:36:0,-49.383,-556.118	0/1:141:72,69:72:2584:69:2409:-174.622,0,-190.361	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:78:77,0:77:2764:0:0:0,-23.1793,-248.641	0/1:78:47,31:47:1680:31:1108:-76.5507,0,-128.004	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:130:130,0:130:4632:0:0:0,-39.1339,-417.043	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.408	0/0:250:250,0:250:8927:0:0:0,-75.2575,-803.387	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.432	0/1:119:68,51:68:2436:51:1808:-127.179,0,-183.673	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.953	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:107:107,0:107:3824:0:0:0,-32.2102,-344.358	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:229:229,0:229:8173:0:0:0,-68.9359,-735.585	0/1:70:39,31:39:1400:31:1108:-78.9589,0,-105.227	0/1:57:34,23:34:1216:23:807:-55.7905,0,-92.5879	0/1:59:32,27:32:1152:27:948:-67.8739,0,-86.2294	0/1:105:57,48:57:2040:48:1702:-121.858,0,-152.264	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:76:76,0:76:2705:0:0:0,-22.8783,-243.693	0/1:48:24,24:24:860:24:860:-63.2724,0,-63.2724	0/1:86:53,33:53:1899:33:1172:-79.8989,0,-145.299	0/1:49:14,35:14:504:35:1256:-98.5948,0,-30.9476	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726
chr03	846660	.	C	T	159299	PASS	AB=0.521913;ABP=17.5712;AC=149;AF=0.792553;AN=188;AO=7323;CIGAR=1X;DP=9015;DPB=9015;DPRA=48.457;EPP=15826.6;EPPR=3640.31;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.9739;MQMR=59.9598;NS=94;NUMALT=1;ODDS=0.392917;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262484;QR=60472;RO=1691;RPL=7314;RPP=15826.6;RPPR=3640.31;RPR=9;RUN=1;SAF=0;SAP=15904.7;SAR=7323;SRF=0;SRP=3674.97;SRR=1691;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:113:53,60:53:1904:60:2140:-158.852,0,-137.621	0/1:91:47,44:47:1684:44:1584:-115.458,0,-124.453	1/1:186:0,186:0:0:186:6684:-601.628,-55.9916,0	1/1:64:1,63:1:27:63:2256:-200.603,-16.5661,0	1/1:58:0,58:0:0:58:2083:-187.738,-17.4597,0	1/1:124:0,124:0:0:124:4437:-399.497,-37.3277,0	0/1:191:92,99:92:3288:99:3562:-262.799,0,-238.643	1/1:99:0,99:0:0:99:3541:-318.897,-29.802,0	1/1:130:0,130:0:0:130:4657:-419.29,-39.1339,0	1/1:61:0,61:0:0:61:2192:-197.542,-18.3628,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:80:0,80:0:0:80:2880:-259.436,-24.0824,0	1/1:106:0,106:0:0:106:3808:-342.916,-31.9092,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:185:2,183:2:72:183:6549:-582.649,-48.8538,0	1/1:104:0,104:0:0:104:3740:-336.799,-31.3071,0	0/1:95:44,51:44:1584:51:1828:-136.203,0,-114.254	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:119:44,75:44:1584:75:2692:-206.702,0,-107.029	0/1:74:22,52:22:792:52:1858:-145.223,0,-49.3295	0/1:324:159,165:159:5699:165:5901:-433.66,0,-414.39	1/1:206:0,206:0:0:206:7392:-665.323,-62.0122,0	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/1:225:129,96:129:4632:96:3448:-242.8,0,-349.31	1/1:214:7,207:7:252:207:7406:-643.552,-41.3915,0	1/1:169:0,169:0:0:169:6038:-543.522,-50.8741,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:24:8,16:8:284:16:576:-44.9503,0,-18.6786	1/1:149:0,149:0:0:149:5360:-482.529,-44.8535,0	1/1:259:0,259:0:0:259:9289:-835.973,-77.9668,0	0/1:64:35,29:35:1252:29:1044:-75.0089,0,-93.7192	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:146:73,73:73:2612:73:2605:-190.746,0,-191.378	0/1:37:22,15:22:788:15:532:-37.0744,0,-60.1067	0/1:154:74,80:74:2639:80:2880:-213.077,0,-191.393	0/1:46:25,21:25:873:21:756:-54.5198,0,-65.0372	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:125:60,65:60:2152:65:2292:-168.906,0,-156.318	1/1:187:0,187:0:0:187:6705:-603.484,-56.2926,0	1/1:148:0,148:0:0:148:5281:-475.419,-44.5524,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:152:85,67:85:3036:67:2412:-171.579,0,-227.714	1/1:263:0,262:0:0:262:9400:-845.599,-78.8699,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:128:55,73:55:1968:73:2628:-198.235,0,-138.855	1/1:65:0,65:0:0:65:2317:-208.788,-19.567,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:142:79,63:79:2836:63:2256:-160.557,0,-212.732	1/1:26:0,26:0:0:26:920:-83.1165,-7.82678,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:23:14,9:14:500:9:320:-22.2187,0,-38.4125	0/1:113:44,69:44:1572:69:2476:-189.077,0,-107.755	1/1:97:1,96:1:36:96:3452:-307.293,-25.6016,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:161:96,65:96:3427:65:2317:-160.323,0,-260.175	1/1:246:6,240:6:216:240:8618:-755.821,-54.2629,0	0/1:74:16,58:16:552:58:2080:-165.194,0,-27.7266	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:182:1,181:1:36:181:6471:-578.876,-51.1892,0	0/1:144:71,73:71:2532:73:2609:-191.708,0,-184.784	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:80:0,80:0:0:80:2857:-257.366,-24.0824,0	0/1:77:30,47:30:1072:47:1692:-129.385,0,-73.6131	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:134:0,134:0:0:134:4789:-431.166,-40.338,0	1/1:60:0,60:0:0:60:2148:-193.574,-18.0618,0	1/1:256:0,256:0:0:256:9139:-822.454,-77.0637,0	1/1:110:0,110:0:0:110:3941:-354.88,-33.1133,0	0/1:119:50,69:50:1780:69:2476:-187.271,0,-124.66	1/1:75:1,74:1:36:74:2645:-234.697,-18.979,0	0/1:6:4,2:4:125:2:72:-5.03054,0,-9.74677	1/1:109:1,108:1:36:108:3884:-346.154,-29.214,0	1/1:70:0,70:0:0:70:2504:-225.612,-21.0721,0	1/1:231:0,231:0:0:231:8262:-743.586,-69.5379,0	0/1:69:29,40:29:1036:40:1436:-108.767,0,-72.7828	0/1:56:22,34:22:792:34:1218:-93.0688,0,-54.748	0/1:59:27,32:27:963:32:1144:-85.5087,0,-69.2252	0/1:103:46,57:46:1643:57:2052:-153.945,0,-117.152	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	0/1:51:24,27:24:856:27:972:-72.4454,0,-62.0086	0/1:87:33,54:33:1188:54:1938:-148.506,0,-81.039	0/1:49:36,13:36:1288:13:468:-27.7092,0,-101.473	1/1:67:0,67:0:0:67:2395:-215.806,-20.169,0	1/1:80:0,80:0:0:80:2880:-259.436,-24.0824,0
chr03	1018894	.	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chr03	1018910	.	T	C	29345	PASS	AB=0.599361;ABP=673.589;AC=96;AF=0.510638;AN=188;AO=4801;CIGAR=1X;DP=7951;DPB=7951;DPRA=0;EPP=9677.9;EPPR=6565.68;GTI=10;LEN=1;MEANALT=1.05319;MQM=26.478;MQMR=50.0839;NS=94;NUMALT=1;ODDS=0.606105;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171318;QR=111589;RO=3145;RPL=88;RPP=9677.9;RPPR=6523.18;RPR=4713;RUN=1;SAF=4801;SAP=10428.2;SAR=0;SRF=3140;SRP=6788.93;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:1,11:1:36:11:392:-11.4005,-0.0389259,0	0/1:92:20,72:20:712:72:2563:-126.899,0,-35.9215	0/1:87:23,64:23:811:64:2300:-114.67,0,-46.3742	0/1:162:83,79:83:2947:79:2824:-91.5666,0,-215.531	0/1:32:16,16:16:561:16:576:-16.2802,0,-35.2908	0/1:18:3,15:3:108:15:536:-11.6899,0,-4.58708	0/1:87:22,65:22:788:65:2328:-90.1662,0,-44.7515	0/1:88:16,72:16:540:72:2575:-121.081,0,-21.7047	0/1:65:15,50:15:536:50:1768:-38.7534,0,-27.8089	0/1:88:24,64:24:860:64:2296:-87.3745,0,-50.9783	0/1:114:62,52:62:2205:52:1864:-58.6008,0,-163.713	0/1:106:41,65:41:1451:65:2323:-43.1439,0,-96.1609	0/1:79:43,36:43:1504:36:1292:-21.8063,0,-110.94	0/1:122:51,71:51:1796:71:2544:-83.5123,0,-123.912	0/1:81:41,40:41:1468:40:1436:-47.2404,0,-107.52	0/1:80:45,35:45:1602:35:1232:-31.6666,0,-119.818	0/1:107:58,49:58:2054:49:1735:-25.0448,0,-150.977	0/1:68:34,34:34:1216:34:1211:-22.4665,0,-87.793	0/1:73:34,39:34:1211:39:1392:-23.4342,0,-86.5642	0/1:168:69,99:69:2436:99:3548:-127.651,0,-167.177	0/1:86:43,43:43:1528:43:1535:-43.464,0,-110.794	1/1:68:5,63:5:172:63:2230:-152.487,-4.66502,0	0/1:26:6,20:6:216:20:720:-27.1954,0,-11.9044	0/1:72:44,28:44:1557:28:992:-22.6806,0,-116.397	0/1:46:12,34:12:432:34:1216:-52.4578,0,-25.2083	0/1:175:51,124:51:1802:124:4406:-276.019,0,-106.905	0/1:187:83,103:83:2923:103:3687:-111.497,0,-205.728	0/1:36:21,15:21:740:15:540:-13.5515,0,-55.8403	0/1:191:61,130:61:2184:130:4639:-277.86,0,-138.595	0/1:101:28,73:28:1008:73:2612:-95.233,0,-58.7647	0/1:98:24,74:24:856:74:2629:-101.705,0,-46.4833	0/1:9:2,7:2:72:7:243:-13.6046,0,-3.8287	0/1:17:7,10:7:244:10:360:-11.2013,0,-17.1104	0/0:9:8,1:8:284:1:36:0,-1.41133,-24.4375	0/1:7:4,3:4:129:3:108:-1.52701,0,-9.75078	0/1:15:8,7:8:288:7:252:-16.39,0,-21.401	0/1:204:113,91:113:4036:91:3231:-120.629,0,-301.503	0/1:165:78,87:78:2791:87:3088:-90.2582,0,-193.473	0/1:65:17,48:17:612:48:1711:-100.092,0,-35.4279	0/1:2:1,1:1:36:1:36:-1.19122,0,-2.91895	0/1:85:15,70:15:515:70:2488:-151.077,0,-20.9167	0/1:66:21,45:21:748:45:1600:-85.3628,0,-47.494	1/1:42:3,39:3:108:39:1388:-84.7647,-2.6197,0	0/1:82:22,60:22:792:60:2125:-122.895,0,-46.5588	0/1:80:38,42:38:1347:42:1504:-51.2851,0,-97.1446	0/1:46:11,35:11:387:35:1239:-80.524,0,-19.9765	0/1:123:71,52:71:2528:52:1859:-25.5362,0,-185.536	0/1:121:51,69:51:1793:69:2476:-87.7227,0,-122.545	0/1:118:47,71:47:1668:71:2539:-92.5822,0,-114.267	0/1:123:41,82:41:1468:82:2936:-178.057,0,-95.0703	0/1:134:57,77:57:2016:77:2747:-112.964,0,-140.916	0/1:4:1,3:1:36:3:108:-4.36601,0,-2.38511	0/1:92:26,66:26:932:66:2352:-118.646,0,-55.9395	0/1:49:11,38:11:388:38:1368:-59.6925,0,-20.2452	0/1:23:4,19:4:144:19:684:-15.3107,0,-6.30691	0/1:93:31,62:31:1103:62:2198:-112.493,0,-71.1744	0/1:14:5,9:5:180:9:311:-12.0222,0,-12.296	0/1:6:2,4:2:57:4:144:-11.507,0,-3.6035	0/1:9:3,6:3:108:6:216:-15.784,0,-7.35552	0/1:57:15,42:15:521:42:1500:-99.5088,0,-29.8678	0/1:203:98,105:98:3471:105:3764:-135.952,0,-250.227	0/1:11:3,8:3:104:8:288:-11.2108,0,-6.34263	0/1:106:34,72:34:1211:72:2559:-147.074,0,-77.279	0/1:161:88,73:88:3144:73:2616:-83.6186,0,-233.51	0/1:64:21,43:21:737:43:1532:-80.686,0,-45.5582	0/1:88:40,48:40:1423:48:1724:-60.2915,0,-100.097	0/1:123:42,81:42:1492:81:2905:-109.065,0,-95.8202	0/1:61:14,47:14:496:47:1674:-105.336,0,-26.4445	0/1:66:38,28:38:1347:28:1004:-27.0124,0,-101.127	0/1:93:44,49:44:1555:49:1743:-32.315,0,-109.953	0/1:91:30,61:30:1080:61:2172:-132.733,0,-66.2096	0/1:35:15,20:15:532:20:720:-24.4861,0,-37.5618	0/1:102:46,55:46:1644:55:1946:-35.7122,0,-114.573	0/1:82:31,51:31:1095:51:1819:-34.3747,0,-73.4549	0/1:91:30,60:30:1076:60:2136:-68.8099,0,-68.6953	0/1:140:86,54:86:3063:54:1940:-55.9988,0,-232.826	0/1:101:27,74:27:960:74:2651:-131.648,0,-46.0136	0/1:88:41,47:41:1452:47:1679:-28.4366,0,-103.609	0/1:7:5,2:5:180:2:72:-2.54067,0,-14.1596	0/1:104:65,39:65:2328:39:1379:-33.7152,0,-177.374	0/1:116:68,47:68:2394:47:1679:-21.1808,0,-179.326	0/1:144:65,79:65:2295:79:2836:-97.8275,0,-161.493	0/1:114:33,81:33:1160:81:2908:-165.977,0,-69.7902	0/1:78:27,51:27:968:51:1812:-108.871,0,-63.6261	0/1:111:26,85:26:916:85:3022:-181.011,0,-48.1236	0/1:140:33,107:33:1157:107:3831:-206.447,0,-61.6812	0/1:61:33,28:33:1175:28:1000:-14.1095,0,-86.953	0/1:93:42,51:42:1447:51:1815:-31.4188,0,-101.422	0/1:106:50,56:50:1767:56:2008:-34.7911,0,-125.978	0/1:89:31,58:31:1100:58:2079:-111.578,0,-72.1251	0/1:164:60,104:60:2143:104:3700:-211.858,0,-142.515	0/1:52:7,45:7:252:45:1584:-116.743,0,-6.95032	0/1:78:25,53:25:892:53:1870:-74.1868,0,-56.9284	0/1:113:55,58:55:1942:58:2063:-71.1426,0,-140.442
chr03	1018921	.	T	C	32719.7	PASS	AB=0.522142;ABP=11.2802;AC=149;AF=0.792553;AN=188;AO=3768;CIGAR=1X;DP=4734;DPB=4734;DPRA=12.7151;EPP=4710.27;EPPR=533.42;GTI=12;LEN=1;MEANALT=1.03226;MQM=18.2818;MQMR=55.6802;NS=94;NUMALT=1;ODDS=1.15068;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134012;QR=34424;RO=963;RPL=3313;RPP=4710.27;RPPR=511.773;RPR=455;RUN=1;SAF=3768;SAP=8185.12;SAR=0;SRF=958;SRP=2050.93;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:1,10:1:36:10:360:-8.40931,0,-0.283238	0/1:70:33,37:33:1172:37:1319:-22.2635,0,-84.4608	0/1:65:32,32:32:1135:32:1152:-22.079,0,-82.8525	1/1:81:1,80:1:36:80:2860:-138.614,-20.7852,0	0/1:20:4,16:4:144:16:576:-19.8926,0,-1.42989	1/1:15:0,15:0:0:15:518:-17.0818,-4.51545,0	1/1:64:0,64:0:0:64:2296:-114.579,-19.2659,0	0/1:70:31,39:31:1103:39:1400:-24.2529,0,-76.4374	1/1:50:0,50:0:0:50:1765:-58.327,-15.0515,0	1/1:65:0,65:0:0:65:2327:-115.62,-19.567,0	1/1:54:0,54:0:0:54:1931:-96.4522,-16.2556,0	1/1:67:0,67:0:0:67:2385:-77.4548,-20.169,0	1/1:37:0,37:0:0:37:1317:-46.4846,-11.1381,0	1/1:72:0,72:0:0:72:2561:-121.414,-21.6742,0	1/1:39:0,39:0:0:39:1379:-69.73,-11.7402,0	1/1:36:0,36:0:0:36:1281:-57.7524,-10.8371,0	1/1:47:1,46:1:36:46:1647:-52.3645,-12.751,0	1/1:33:0,33:0:0:33:1161:-39.9584,-9.93399,0	1/1:39:0,39:0:0:39:1384:-45.4048,-11.7402,0	1/1:101:2,99:2:72:99:3512:-174.101,-26.2569,0	1/1:44:0,44:0:0:44:1572:-70.9882,-13.2453,0	0/1:61:35,26:35:1256:26:910:-31.4987,0,-94.9375	1/1:19:0,19:0:0:19:680:-34.1138,-5.71957,0	1/1:29:1,28:1:36:28:990:-42.3457,-6.74054,0	0/1:34:6,28:6:216:28:1000:-36.6179,0,-9.54609	0/1:123:66,57:66:2359:57:2027:-78.0739,0,-174.459	1/1:103:1,102:1:32:102:3606:-163.83,-29.1271,0	1/1:15:0,15:0:0:15:540:-24.3886,-4.51545,0	0/1:133:65,68:65:2323:68:2405:-93.2525,0,-169.195	1/1:72:2,70:2:72:70:2483:-111.629,-16.3676,0	1/1:76:2,74:2:72:74:2643:-128.227,-18.7311,0	0/1:7:3,4:3:108:4:140:-4.5187,0,-7.89265	1/1:10:0,10:0:0:10:351:-16.2788,-3.0103,0	1/1:1:0,1:0:0:1:36:-1.29794,-0.30103,0	1/1:3:0,3:0:0:3:108:-3.63422,-0.90309,0	0/0:7:6,1:6:216:1:36:0,-0.809273,-18.4722	1/1:91:0,91:0:0:91:3252:-182.421,-27.3937,0	1/1:90:6,83:6:216:83:2953:-122.72,-16.1219,0	0/1:45:28,17:28:1004:17:593:-6.11574,0,-76.9158	1/1:1:0,1:0:0:1:36:-1.79328,-0.30103,0	0/1:70:39,31:39:1363:31:1099:-29.0819,0,-101.702	0/1:36:13,23:13:468:23:824:-26.3649,0,-31.6039	0/1:38:19,19:19:684:19:663:-20.9364,0,-50.285	0/1:46:14,32:14:504:32:1128:-45.9014,0,-31.8455	1/1:43:0,43:0:0:43:1527:-78.1519,-12.9443,0	0/1:36:24,12:24:864:12:415:-11.7541,0,-65.2646	1/1:55:1,54:1:36:54:1913:-63.8512,-15.5576,0	1/1:69:2,67:2:72:67:2387:-115.085,-16.4412,0	1/1:68:0,68:0:0:68:2409:-122.597,-20.47,0	0/1:82:48,34:48:1710:34:1197:-35.8975,0,-129.303	1/1:74:0,74:0:0:74:2618:-146.237,-22.2762,0	1/1:3:0,3:0:0:3:108:-5.57013,-0.90309,0	0/1:65:33,32:33:1184:32:1148:-19.5587,0,-86.916	1/1:38:0,38:0:0:38:1348:-74.3045,-11.4391,0	1/1:19:0,19:0:0:19:680:-22.2316,-5.71957,0	0/1:60:24,36:24:860:36:1292:-40.2107,0,-59.5583	1/1:8:0,8:0:0:8:279:-14.4604,-2.40824,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3132	0/1:6:5,1:5:176:1:36:-0.376971,0,-14.3788	0/1:40:30,10:30:1080:10:338:-2.96799,0,-85.3957	1/1:103:3,100:3:108:100:3544:-171.941,-20.9322,0	1/1:8:0,8:0:0:8:288:-14.5221,-2.40824,0	0/1:53:12,41:12:432:41:1467:-65.3795,0,-23.2666	1/1:72:0,72:0:0:72:2576:-130.28,-21.6742,0	0/1:42:18,24:18:648:24:855:-26.1625,0,-45.9123	1/1:50:1,49:1:36:49:1748:-86.2564,-12.7726,0	1/1:83:1,82:1:32:82:2927:-145.272,-22.7367,0	0/1:47:28,19:28:989:19:658:-19.9173,0,-74.9668	1/1:27:0,27:0:0:27:968:-43.6579,-8.12781,0	1/1:49:0,49:0:0:49:1736:-60.3007,-14.7505,0	0/1:57:29,28:29:1040:28:981:-36.4666,0,-75.7098	1/1:22:0,22:0:0:22:788:-38.5893,-6.62266,0	1/1:57:1,56:1:36:56:1995:-61.7507,-13.5641,0	1/1:51:0,51:0:0:51:1816:-59.0634,-15.3525,0	1/1:60:0,60:0:0:60:2156:-96.8296,-18.0618,0	1/1:55:0,55:0:0:55:1976:-99.9333,-16.5567,0	0/1:82:44,38:44:1571:38:1358:-19.2002,0,-107.243	1/1:48:0,48:0:0:48:1694:-56.0743,-14.4494,0	0/1:2:1,1:1:36:1:36:-0.695877,0,-2.99251	1/1:39:0,39:0:0:39:1388:-65.0591,-11.7402,0	0/1:51:5,46:5:180:46:1647:-39.4113,0,-1.19953	1/1:81:2,79:2:72:79:2805:-135.38,-18.8001,0	0/1:74:31,42:31:1112:42:1508:-52.0533,0,-78.0999	0/1:49:27,22:27:972:22:770:-24.6123,0,-72.9895	0/1:71:31,40:31:1116:40:1424:-51.7519,0,-77.6389	0/1:100:34,66:34:1220:66:2323:-88.6771,0,-79.9242	1/1:27:0,27:0:0:27:959:-31.3842,-8.12781,0	1/1:51:0,51:0:0:51:1804:-59.3692,-15.3525,0	1/1:56:0,56:0:0:56:1980:-66.6339,-16.8577,0	0/1:57:26,31:26:921:31:1112:-32.955,0,-65.8734	0/1:96:53,43:53:1899:43:1533:-39.7236,0,-141.87	0/1:43:34,9:34:1215:9:315:-4.59636,0,-96.6078	1/1:54:0,54:0:0:54:1928:-100.366,-16.2556,0	1/1:57:0,57:0:0:57:2048:-103.472,-17.1587,0
chr03	1018932	.	G	T	20826.2	PASS	AB=0.515293;ABP=6.92886;AC=149;AF=0.792553;AN=188;AO=3722;CIGAR=1X;DP=4694;DPB=4694;DPRA=12.6075;EPP=8085.23;EPPR=2063.96;GTI=13;LEN=1;MEANALT=1.03226;MQM=18.2926;MQMR=55.7895;NS=94;NUMALT=1;ODDS=0.873201;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132755;QR=34550;RO=969;RPL=3722;RPP=8085.23;RPPR=2107.17;RPR=0;RUN=1;SAF=3722;SAP=8085.23;SAR=0;SRF=964;SRP=2063.96;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:1,10:1:36:10:356:-8.40648,0,-0.283238	0/1:71:34,37:34:1224:37:1332:-21.978,0,-88.8696	0/1:64:30,34:30:1046:34:1212:-24.2819,0,-75.088	1/1:79:1,78:1:36:78:2784:-134.906,-20.1831,0	0/1:20:4,16:4:140:16:576:-19.8926,0,-1.41183	1/1:14:0,14:0:0:14:500:-15.94,-4.21442,0	1/1:64:0,64:0:0:64:2283:-114.504,-19.2659,0	0/1:68:32,36:32:1136:36:1292:-21.5314,0,-79.1477	1/1:47:0,47:0:0:47:1667:-54.8318,-14.1484,0	1/1:65:0,65:0:0:65:2320:-115.613,-19.567,0	1/1:55:0,55:0:0:55:1940:-97.9826,-16.5567,0	1/1:68:1,67:1:36:67:2390:-75.8123,-19.0727,0	1/1:36:0,36:0:0:36:1288:-45.586,-10.8371,0	1/1:71:0,71:0:0:71:2524:-120.056,-21.3731,0	1/1:39:0,39:0:0:39:1400:-69.8334,-11.7402,0	1/1:36:0,35:0:0:35:1228:-54.4553,-10.5361,0	1/1:47:0,47:0:0:47:1684:-54.937,-14.1484,0	1/1:33:1,32:1:36:32:1148:-37.3631,-8.53661,0	1/1:39:0,39:0:0:39:1396:-45.4122,-11.7402,0	1/1:101:1,100:1:36:100:3571:-177.66,-28.1252,0	1/1:41:0,41:0:0:41:1476:-66.1733,-12.3422,0	0/1:65:38,27:38:1360:27:951:-32.3272,0,-103.089	1/1:21:0,21:0:0:21:747:-36.6632,-6.32163,0	1/1:28:1,27:1:36:27:968:-40.7724,-6.43951,0	0/1:34:6,28:6:216:28:995:-36.5872,0,-9.54609	0/1:122:67,55:67:2412:55:1963:-73.9881,0,-179.528	1/1:102:0,102:0:0:102:3620:-165.926,-30.7051,0	1/1:14:0,14:0:0:14:500:-22.7656,-4.21442,0	0/1:128:63,65:63:2248:65:2316:-88.8318,0,-163.955	1/1:73:2,71:2:72:71:2524:-113.811,-16.6686,0	1/1:74:2,72:2:72:72:2572:-124.38,-18.129,0	0/1:6:2,4:2:72:4:144:-4.82895,0,-5.02729	1/1:10:0,10:0:0:10:360:-16.3188,-3.0103,0	1/1:1:0,1:0:0:1:36:-1.29794,-0.30103,0	1/1:3:0,3:0:0:3:108:-3.63422,-0.90309,0	0/0:7:6,1:6:216:1:36:0,-0.809273,-18.4722	1/1:93:0,93:0:0:93:3310:-185.768,-27.9958,0	1/1:90:5,85:5:180:85:3021:-127.685,-17.9418,0	0/1:45:29,16:29:1010:16:576:-5.003,0,-77.4687	1/1:1:0,1:0:0:1:36:-1.79328,-0.30103,0	0/1:69:38,31:38:1368:31:1116:-29.4407,0,-102.523	0/1:37:14,23:14:496:23:828:-26.0729,0,-33.789	0/1:39:19,20:19:680:20:716:-22.3068,0,-49.6237	0/1:45:14,31:14:495:31:1094:-44.5551,0,-31.3318	1/1:42:0,42:0:0:42:1495:-76.6721,-12.6433,0	0/1:37:25,12:25:896:12:432:-11.4972,0,-67.8415	1/1:54:1,53:1:36:53:1900:-62.7418,-15.2566,0	1/1:71:2,69:2:68:69:2434:-118.887,-17.0719,0	1/1:68:0,68:0:0:68:2409:-122.597,-20.47,0	0/1:79:48,31:48:1715:31:1098:-31.7978,0,-130.721	1/1:74:0,74:0:0:74:2623:-145.924,-22.2762,0	1/1:3:0,3:0:0:3:108:-5.57013,-0.90309,0	0/1:65:32,32:32:1144:32:1144:-19.5127,0,-83.381	1/1:38:0,38:0:0:38:1360:-74.3991,-11.4391,0	1/1:18:0,18:0:0:18:635:-21.0507,-5.41854,0	0/1:60:25,35:25:887:35:1260:-38.6058,0,-61.9844	1/1:9:0,9:0:0:9:324:-16.3125,-2.70927,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3132	0/1:6:5,1:5:180:1:36:-0.376971,0,-14.7459	0/1:41:31,10:31:1107:10:352:-3.42377,0,-87.4531	1/1:101:3,98:3:108:98:3512:-167.493,-20.3301,0	1/1:7:0,7:0:0:7:252:-12.7317,-2.10721,0	0/1:55:12,43:12:432:43:1540:-68.768,0,-22.6645	1/1:72:0,72:0:0:72:2575:-130.247,-21.6742,0	0/1:40:18,22:18:648:22:792:-23.5558,0,-46.5828	1/1:47:1,46:1:36:46:1625:-80.4296,-11.8695,0	1/1:80:1,79:1:36:79:2831:-140.474,-21.8035,0	0/1:47:28,19:28:1004:19:680:-20.0539,0,-75.4884	1/1:28:0,28:0:0:28:995:-46.8406,-8.42884,0	1/1:46:0,46:0:0:46:1635:-57.0716,-13.8474,0	0/1:58:30,28:30:1067:28:1004:-36.5318,0,-77.836	1/1:22:0,22:0:0:22:775:-38.5449,-6.62266,0	1/1:57:2,55:2:72:55:1963:-59.3432,-12.322,0	1/1:51:0,51:0:0:51:1820:-59.0662,-15.3525,0	1/1:62:0,62:0:0:62:2232:-99.4402,-18.6639,0	1/1:54:0,54:0:0:54:1944:-98.1571,-16.2556,0	0/1:80:44,36:44:1584:36:1292:-17.6482,0,-108.948	1/1:47:0,47:0:0:47:1683:-54.9301,-14.1484,0	0/1:2:1,1:1:36:1:36:-0.695877,0,-2.99251	1/1:37:0,37:0:0:37:1315:-61.8926,-11.1381,0	0/1:50:5,45:5:180:45:1596:-38.1745,0,-1.50056	1/1:80:2,78:2:72:78:2796:-133.783,-18.4991,0	0/1:74:32,42:32:1135:42:1486:-51.9145,0,-80.1086	0/1:48:27,21:27:960:21:735:-23.1674,0,-72.2096	0/1:72:32,39:32:1140:39:1391:-49.7439,0,-79.638	0/1:100:35,65:35:1234:65:2323:-86.8634,0,-81.1798	1/1:28:0,28:0:0:28:993:-32.4665,-8.42884,0	1/1:49:0,49:0:0:49:1752:-57.2706,-14.7505,0	1/1:55:0,55:0:0:55:1967:-64.8157,-16.5567,0	0/1:57:26,31:26:932:31:1106:-32.941,0,-66.8667	0/1:91:51,40:51:1800:40:1428:-36.5108,0,-134.549	0/1:43:35,8:35:1238:8:288:-1.48859,0,-98.668	1/1:53:0,53:0:0:53:1867:-98.4938,-15.9546,0	1/1:56:0,56:0:0:56:2012:-101.853,-16.8577,0
chr03	1018934	.	A	T	16099.1	PASS	AB=0.491024;ABP=4.33565;AC=38;AF=0.202128;AN=188;AO=966;CIGAR=1X;DP=4740;DPB=4740;DPRA=1.30032;EPP=2066.05;EPPR=8193.8;GTI=14;LEN=1;MEANALT=1.02041;MQM=55.853;MQMR=18.2967;NS=94;NUMALT=1;ODDS=0.704347;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34509;QR=135161;RO=3772;RPL=966;RPP=2100.65;RPPR=8193.8;RPR=0;RUN=1;SAF=962;SAP=2066.05;SAR=4;SRF=3772;SRP=8193.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:10,1:10:360:1:36:-0.283238,0,-8.40931	0/1:70:36,34:36:1296:34:1215:-88.2595,0,-21.1109	0/1:66:34,32:34:1216:32:1152:-83.9122,0,-23.937	0/0:81:81,0:81:2874:0:0:0,-24.3834,-144.958	0/1:20:16,4:16:572:4:135:-1.36734,0,-19.8835	0/0:15:15,0:15:532:0:0:0,-4.51545,-17.1045	0/0:64:64,0:64:2304:0:0:0,-19.2659,-114.608	0/1:71:39,32:39:1404:32:1148:-81.286,0,-23.9547	0/0:48:48,0:48:1705:0:0:0,-14.4494,-55.9624	0/0:65:65,0:65:2332:0:0:0,-19.5669,-115.656	0/0:55:55,0:55:1980:0:0:0,-16.5566,-98.3177	0/0:68:68,0:68:2440:0:0:0,-20.47,-78.4803	0/0:36:36,0:36:1292:0:0:0,-10.8371,-45.5877	0/0:72:72,0:72:2592:0:0:0,-21.6742,-121.879	0/0:38:38,0:38:1364:0:0:0,-11.4391,-68.043	0/0:36:35,1:35:1247:1:28:0,-9.16964,-53.0735	0/0:48:48,0:48:1728:0:0:0,-14.4494,-56.1108	0/0:33:32,0:32:1143:0:0:0,-9.63296,-38.8089	0/0:39:39,0:39:1396:0:0:0,-11.7402,-45.4122	0/0:102:101,1:101:3628:1:36:0,-28.4262,-179.894	0/0:43:43,0:43:1540:0:0:0,-12.9443,-69.3851	0/1:63:26,37:26:936:37:1328:-100.812,0,-31.0937	0/0:20:20,0:20:720:0:0:0,-6.0206,-35.0222	0/0:29:28,1:28:1008:1:36:0,-6.74054,-42.3955	0/1:34:28,6:28:1004:6:216:-9.54609,0,-36.6269	0/1:123:56,67:56:2008:67:2391:-177.358,0,-75.7936	0/0:103:103,0:103:3689:0:0:0,-31.0061,-167.575	0/0:14:14,0:14:500:0:0:0,-4.21442,-22.7656	0/1:131:67,64:67:2393:64:2304:-168.088,0,-91.9283	0/0:71:69,2:69:2484:2:72:0,-16.0665,-110.792	0/0:75:73,2:73:2624:2:68:0,-18.4486,-127.252	0/1:7:4,3:4:144:3:100:-7.19067,0,-4.52792	0/0:10:10,0:10:360:0:0:0,-3.0103,-16.3188	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.29794	0/0:3:3,0:3:108:0:0:0,-0.90309,-3.63422	1/1:7:1,6:1:36:6:216:-18.4722,-0.809273,0	0/0:91:91,0:91:3247:0:0:0,-27.3937,-182.249	0/0:92:86,5:86:3077:5:180:0,-18.4172,-129.779	0/1:45:17,28:17:612:28:992:-75.8416,0,-6.17125	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.79328	0/1:71:31,40:31:1097:40:1436:-107.967,0,-28.6784	0/1:36:23,13:23:824:13:460:-30.8815,0,-26.3649	0/1:37:18,19:18:648:19:684:-50.586,0,-18.0923	0/1:47:33,14:33:1176:14:504:-31.5444,0,-47.6271	0/0:44:44,0:44:1550:0:0:0,-13.2453,-78.8414	0/1:34:11,23:11:396:23:828:-63.5675,0,-10.4345	0/0:53:52,1:52:1860:1:36:0,-14.9556,-61.5709	0/0:71:69,2:69:2480:2:72:0,-17.0433,-119.729	0/0:72:72,0:72:2572:0:0:0,-21.6742,-129.913	0/1:81:33,48:33:1179:48:1728:-131.224,0,-34.5839	0/0:78:78,0:78:2788:0:0:0,-23.4803,-153.991	0/0:3:3,0:3:108:0:0:0,-0.90309,-5.57013	0/1:66:32,34:32:1152:34:1220:-89.8501,0,-19.08	0/0:37:37,0:37:1324:0:0:0,-11.1381,-72.4343	0/0:18:18,0:18:648:0:0:0,-5.41854,-21.0662	0/1:59:34,25:34:1216:25:887:-62.2851,0,-37.2749	0/0:9:9,0:9:324:0:0:0,-2.70927,-16.3125	1/1:4:0,4:0:0:4:144:-13.3132,-1.20412,0	0/1:6:1,5:1:36:5:171:-13.9193,0,-0.376971	0/1:42:11,31:11:381:31:1116:-87.9623,0,-4.62477	0/0:105:102,3:102:3652:3:108:0,-21.5342,-175.822	0/0:8:8,0:8:288:0:0:0,-2.40824,-14.5221	0/1:54:43,11:43:1532:11:396:-19.7271,0,-69.033	0/0:73:73,0:73:2620:0:0:0,-21.9752,-132.104	0/1:43:24,19:24:856:19:673:-47.9178,0,-25.8627	0/0:49:48,1:48:1724:1:36:0,-12.4716,-84.6801	0/0:80:80,0:80:2876:0:0:0,-24.0824,-144.604	0/1:46:19,27:19:684:27:972:-72.9115,0,-20.3691	0/0:28:28,0:28:1008:0:0:0,-8.42884,-46.8893	0/0:48:48,0:48:1724:0:0:0,-14.4494,-59.1545	0/1:57:28,29:28:1008:29:1025:-74.4537,0,-36.8356	0/0:21:21,0:21:737:0:0:0,-6.32163,-36.5803	0/0:57:56,1:56:2008:1:36:0,-13.5641,-61.7661	0/0:51:51,0:51:1832:0:0:0,-15.3525,-59.0735	0/0:61:61,0:61:2192:0:0:0,-18.3628,-97.8173	0/0:55:55,0:55:1961:0:0:0,-16.5566,-99.7157	0/1:80:37,43:37:1328:43:1531:-104.194,0,-18.8164	0/0:47:47,0:47:1692:0:0:0,-14.1484,-54.9427	0/1:2:1,1:1:36:1:36:-2.99251,0,-0.695877	0/0:37:37,0:37:1328:0:0:0,-11.1381,-61.9413	0/0:51:47,4:47:1680:4:144:0,-2.03891,-43.3826	0/0:82:80,2:80:2876:2:68:0,-19.1298,-137.421	0/1:74:43,31:43:1544:31:1101:-77.0102,0,-53.7416	0/1:49:22,27:22:788:27:972:-72.9895,0,-24.7346	0/1:72:39,33:39:1404:33:1160:-81.5939,0,-49.7142	0/1:100:66,34:66:2368:34:1220:-79.9496,0,-89.6822	0/0:28:28,0:28:1008:0:0:0,-8.42884,-32.4779	0/0:50:50,0:50:1792:0:0:0,-15.0515,-58.2619	0/0:56:56,0:56:2012:0:0:0,-16.8577,-66.4064	0/1:57:31,26:31:1112:26:918:-65.6513,0,-32.955	0/1:99:44,55:44:1576:55:1976:-147.703,0,-40.5752	0/1:41:7,34:7:252:34:1198:-95.6822,0,-0.300074	0/0:53:53,0:53:1889:0:0:0,-15.9546,-98.4052	0/0:57:57,0:57:2048:0:0:0,-17.1587,-103.467
chr03	1018985	.	G	A	66707.1	PASS	AB=0.442746;ABP=291.695;AC=92;AF=0.489362;AN=188;AO=4489;CIGAR=1X;DP=10149;DPB=10149;DPRA=22.0413;EPP=9750.75;EPPR=12254.5;GTI=6;LEN=1;MEANALT=1.06522;MQM=51.2589;MQMR=47.226;NS=94;NUMALT=1;ODDS=1.01128;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160155;QR=199779;RO=5654;RPL=1;RPP=9742.07;RPPR=12280.5;RPR=4488;RUN=1;SAF=1;SAP=9742.07;SAR=4488;SRF=3;SRP=12254.5;SRR=5651;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:15,21:15:512:21:748:-50.2013,0,-35.2797	0/1:119:54,65:54:1936:65:2335:-155.637,0,-137.056	0/1:88:37,51:37:1303:51:1832:-126.313,0,-89.7696	0/1:168:118,50:118:4184:50:1747:-106.645,0,-322.176	0/1:72:48,24:48:1675:24:847:-54.7816,0,-125.228	0/1:51:35,16:35:1247:16:572:-36.4527,0,-96.444	0/1:136:81,55:81:2882:55:1964:-136.088,0,-214.772	0/1:115:40,75:40:1394:75:2668:-189.115,0,-90.1744	0/1:151:94,57:94:3337:57:2044:-138.768,0,-252.422	0/1:130:87,43:87:3084:43:1531:-98.9326,0,-235.412	0/1:70:45,25:45:1574:25:888:-59.1578,0,-119.785	0/1:114:62,52:62:2151:52:1860:-133.319,0,-157.543	0/1:104:63,41:63:2234:41:1463:-100.605,0,-168.527	0/1:80:60,20:60:2077:20:720:-41.0357,0,-161.462	0/1:89:47,42:47:1642:42:1504:-108.836,0,-117.886	0/1:68:31,37:31:1090:37:1311:-97.8108,0,-77.308	0/1:71:48,23:48:1678:23:824:-52.9853,0,-128.635	0/1:82:45,37:45:1583:37:1324:-94.6363,0,-115.89	0/1:53:35,18:35:1252:18:636:-41.613,0,-95.7669	0/1:223:178,45:178:6322:45:1605:-77.1787,0,-496.049	0/1:185:111,74:111:3876:74:2652:-183.146,0,-289.722	0/1:97:28,69:28:993:69:2467:-170.76,0,-59.8441	0/1:89:71,18:71:2535:18:648:-31.8455,0,-199.227	0/1:169:101,68:101:3611:68:2436:-168.497,0,-269.685	0/1:73:22,51:22:775:51:1787:-127.306,0,-47.6548	0/1:257:101,155:101:3532:155:5515:-378.555,0,-234.905	0/1:268:174,93:174:6172:93:3335:-219.233,0,-467.872	0/1:45:29,16:29:1017:16:564:-37.5397,0,-76.6351	0/1:232:110,122:110:3915:122:4317:-291.475,0,-278.571	0/1:150:96,54:96:3422:54:1914:-126.323,0,-260.199	0/1:117:70,47:70:2464:47:1688:-116.985,0,-182.426	0/1:4:3,1:3:108:1:36:-2.04204,0,-8.8015	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.3768	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.0681	0/1:5:4,1:4:135:1:36:-2.09312,0,-10.9055	0/1:10:2,8:2:72:8:280:-20.6915,0,-3.77922	0/1:292:167,125:167:5872:125:4459:-313.404,0,-436.603	0/1:149:91,57:91:3187:57:2032:-138.235,0,-239.446	0/1:80:39,41:39:1372:41:1464:-99.328,0,-98.8072	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2217	0/1:660:326,334:326:11586:334:11916:-808.791,0,-832.976	0/1:53:14,39:14:487:39:1400:-102.375,0,-27.4767	0/1:127:56,71:56:1991:71:2531:-178.725,0,-139.937	0/1:84:36,48:36:1258:48:1702:-116.725,0,-86.7764	0/1:70:42,28:42:1472:28:1004:-69.2327,0,-110.668	0/1:102:42,60:42:1495:60:2147:-142.772,0,-101.499	0/1:139:105,34:105:3719:34:1216:-67.3282,0,-287.599	0/1:148:110,38:110:3908:38:1355:-77.2705,0,-303.633	0/1:160:123,37:123:4389:37:1328:-71.6574,0,-339.14	0/1:113:50,63:50:1773:63:2256:-150.12,0,-121.974	0/1:144:101,43:101:3563:43:1511:-91.1027,0,-274.344	0/0:6:6,0:6:201:0:0:0,-1.80618,-17.8936	0/1:229:116,113:116:4122:113:4049:-268.908,0,-297.504	0/1:56:49,7:49:1740:7:248:-5.80651,0,-138.979	0/1:43:23,20:23:809:20:710:-51.2628,0,-59.6888	0/1:110:40,70:40:1427:70:2520:-174.914,0,-94.5822	0/1:70:55,15:55:1948:15:527:-26.6881,0,-152.639	0/1:8:4,4:4:144:4:144:-9.38597,0,-10.8135	0/1:10:3,7:3:108:7:239:-17.849,0,-6.99532	0/1:82:28,54:28:993:54:1935:-139.419,0,-64.0302	0/1:149:91,58:91:3178:58:2071:-141.46,0,-235.414	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.7854	0/1:88:47,41:47:1684:41:1463:-96.6888,0,-124.286	0/1:235:152,83:152:5392:83:2964:-196.167,0,-406.885	0/1:58:13,45:13:464:45:1612:-119.263,0,-23.2689	0/1:78:55,23:55:1963:23:813:-49.9024,0,-150.509	0/1:193:131,62:131:4595:62:2220:-141.965,0,-350.281	0/1:109:39,70:39:1364:70:2512:-174.814,0,-88.3111	0/1:32:23,9:23:810:9:324:-19.8729,0,-63.0972	0/1:84:32,52:32:1148:52:1809:-137.775,0,-77.5822	0/1:66:23,43:23:824:43:1522:-107.817,0,-54.0162	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.403	0/1:172:115,56:115:4055:56:2014:-129.679,0,-310.245	0/1:85:62,23:62:2202:23:828:-49.255,0,-170.693	0/1:148:82,66:82:2858:66:2357:-167.376,0,-211.28	0/1:181:120,60:120:4233:60:2156:-139.679,0,-322.765	0/1:110:40,70:40:1432:70:2499:-173.088,0,-94.0686	0/1:110:81,29:81:2891:29:1044:-60.8081,0,-224.841	0/1:5:2,3:2:72:3:108:-7.52946,0,-5.28437	0/1:103:62,41:62:2193:41:1464:-101.017,0,-164.754	0/1:117:65,52:65:2287:52:1868:-133.031,0,-168.211	0/1:167:91,76:91:3203:76:2715:-194.274,0,-234.651	0/1:93:29,64:29:1019:64:2278:-158.583,0,-63.2494	0/1:72:24,48:24:796:48:1720:-120.377,0,-49.3647	0/1:95:26,69:26:915:69:2464:-179.136,0,-53.3104	0/1:149:49,99:49:1699:99:3507:-247.245,0,-106.379	0/1:82:46,36:46:1631:36:1290:-91.7036,0,-118.846	0/1:99:58,41:58:2011:41:1472:-102.974,0,-150.238	0/1:111:66,45:66:2308:45:1603:-111.138,0,-173.222	0/1:45:15,30:15:536:30:1072:-77.6535,0,-34.7039	0/1:104:31,73:31:1096:73:2584:-185.492,0,-66.2147	0/1:75:20,55:20:716:55:1963:-141.832,0,-41.6101	0/1:89:67,22:67:2386:22:792:-44.7441,0,-184.946	0/1:147:97,50:97:3434:50:1792:-116.912,0,-261.312
chr03	1019005	.	C	G	98350.6	PASS	AB=0.556404;ABP=281.531;AC=96;AF=0.510638;AN=188;AO=5618;CIGAR=1X;DP=10089;DPB=10089;DPRA=0;EPP=11635.8;EPPR=9218.33;GTI=6;LEN=1;MEANALT=1.06383;MQM=47.2307;MQMR=51.194;NS=94;NUMALT=1;ODDS=0.896756;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199461;QR=159571;RO=4465;RPL=5555;RPP=11661.3;RPPR=9226.8;RPR=63;RUN=1;SAF=3;SAP=12176.3;SAR=5615;SRF=1;SRP=9689.95;SRR=4464;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:20,15:20:716:15:514:-35.7808,0,-47.9955	0/1:116:64,52:64:2296:52:1839:-129.451,0,-153.226	0/1:87:50,37:50:1754:37:1328:-92.4412,0,-121.095	0/1:167:49,118:49:1747:118:4195:-323.688,0,-106.806	0/1:69:23,46:23:828:46:1640:-123.27,0,-54.0372	0/1:50:15,35:15:540:35:1235:-95.7178,0,-33.8768	0/1:137:56,81:56:1988:81:2885:-214.92,0,-137.937	0/1:115:77,38:77:2754:38:1364:-86.8843,0,-196.41	0/1:151:57,94:57:2029:94:3304:-249.58,0,-137.417	0/1:132:45,87:45:1608:87:3076:-234.177,0,-105.252	0/1:68:24,44:24:864:44:1580:-120.816,0,-57.5901	0/1:111:52,59:52:1860:59:2103:-153.966,0,-134.222	0/1:106:41,65:41:1467:65:2299:-173.605,0,-100.363	0/1:80:21,59:21:752:59:2078:-161.655,0,-43.9132	0/1:87:41,46:41:1457:46:1647:-119.561,0,-105.207	0/1:66:36,30:36:1296:30:1080:-76.972,0,-97.0535	0/1:71:24,47:24:860:47:1683:-128.716,0,-56.3311	0/1:84:37,47:37:1332:47:1657:-122.215,0,-94.7545	0/1:51:16,35:16:572:35:1247:-95.9685,0,-36.4605	0/1:224:45,179:45:1612:179:6371:-500.068,0,-77.4983	0/1:186:73,113:73:2607:113:4015:-301.337,0,-178.797	0/1:98:71,27:71:2531:27:959:-56.5241,0,-175.484	0/1:92:18,74:18:648:74:2639:-207.286,0,-30.9424	0/1:168:67,101:67:2412:101:3549:-264.553,0,-166.639	0/1:70:47,23:47:1684:23:810:-51.6834,0,-118.389	0/1:261:158,103:158:5639:103:3644:-243.391,0,-387.11	0/1:272:94,178:94:3365:178:6341:-481.027,0,-220.739	0/1:45:17,28:17:604:28:978:-73.5903,0,-40.2797	0/1:225:119,105:119:4238:105:3725:-264.44,0,-285.797	0/1:149:52,97:52:1868:97:3480:-264.758,0,-122.59	0/1:116:46,70:46:1648:70:2484:-183.718,0,-113.688	0/1:4:1,3:1:36:3:108:-8.8015,0,-2.04204	0/1:10:2,8:2:72:8:288:-23.0758,0,-3.82642	0/1:6:2,4:2:72:4:144:-11.4351,0,-5.03054	0/1:5:1,4:1:36:4:144:-11.7166,0,-2.09312	0/1:10:8,2:8:273:2:72:-3.77922,0,-19.8502	0/1:284:118,166:118:4232:166:5870:-438.342,0,-295.346	0/1:148:57,91:57:2040:91:3251:-245.401,0,-139.275	0/1:82:43,39:43:1536:39:1388:-99.681,0,-104.769	1/1:4:0,4:0:0:4:144:-13.2217,-1.20412,0	0/1:656:331,324:331:11860:324:11497:-826.458,0,-804.763	0/1:53:39,14:39:1400:14:495:-28.1634,0,-102.375	0/1:124:72,52:72:2580:52:1838:-127.196,0,-183.083	0/1:82:48,34:48:1720:34:1196:-81.7874,0,-118.124	0/1:70:29,41:29:1040:41:1472:-110.615,0,-72.1003	0/1:102:62,40:62:2216:40:1406:-94.2472,0,-147.571	0/1:141:32,109:32:1148:109:3850:-298.68,0,-61.167	0/1:147:41,106:41:1472:106:3773:-292.296,0,-88.098	0/1:155:37,118:37:1324:118:4191:-325.117,0,-72.8024	0/1:111:63,48:63:2268:48:1708:-117.164,0,-152.836	0/1:141:44,97:44:1576:97:3420:-262.319,0,-97.5494	1/1:6:0,6:0:0:6:212:-18.8905,-1.80618,0	0/1:226:110,116:110:3937:116:4117:-298.133,0,-259.975	0/1:57:7,50:7:252:50:1775:-141.843,0,-5.87025	0/1:42:19,23:19:669:23:820:-60.9699,0,-47.8883	0/1:112:74,38:74:2660:38:1356:-87.6456,0,-185.218	0/1:71:15,55:15:540:55:1976:-154.735,0,-27.5076	0/1:8:4,4:4:144:4:144:-10.8135,0,-9.38597	0/1:10:6,4:6:201:4:135:-9.31362,0,-14.2621	0/1:82:54,28:54:1928:28:991:-63.8762,0,-139.162	0/1:144:55,89:55:1957:89:3123:-231.57,0,-132.681	0/1:9:2,7:2:72:7:240:-19.09,0,-4.12745	0/1:87:41,46:41:1468:46:1629:-119.724,0,-97.0028	0/1:230:82,148:82:2923:148:5239:-396.043,0,-193.427	0/1:57:45,12:45:1604:12:428:-21.4427,0,-118.844	0/1:78:22,56:22:792:56:1995:-153.437,0,-48.019	0/1:193:60,133:60:2152:133:4705:-359.302,0,-135.848	0/1:111:71,40:71:2548:40:1423:-92.7731,0,-176.89	0/1:32:9,23:9:316:23:819:-63.8902,0,-19.1459	0/1:84:52,32:52:1864:32:1135:-76.3963,0,-142.731	0/1:68:44,24:44:1567:24:847:-55.1447,0,-110.761	0/1:13:8,5:8:284:5:176:-12.144,0,-21.99	0/1:169:54,114:54:1932:114:4078:-312.251,0,-123.17	0/1:85:23,62:23:820:62:2171:-168.357,0,-48.5334	0/1:143:62,81:62:2224:81:2882:-214.839,0,-156.884	0/1:178:60,118:60:2139:118:4188:-319.243,0,-139.175	0/1:107:69,38:69:2445:38:1326:-85.9504,0,-169.432	0/1:109:28,81:28:1008:81:2888:-225.06,0,-57.8707	0/1:5:3,2:3:108:2:72:-5.28437,0,-7.52946	0/1:103:42,61:42:1504:61:2192:-164.613,0,-104.615	0/1:117:54,63:54:1901:63:2264:-165.928,0,-135.998	0/1:169:77,92:77:2755:92:3269:-239.848,0,-196.414	0/1:90:61,29:61:2188:29:1014:-63.6784,0,-151.788	0/1:72:48,24:48:1715:24:864:-55.2531,0,-120.766	0/1:94:67,26:67:2374:26:932:-55.1252,0,-171.56	0/1:147:96,50:96:3413:50:1773:-113.459,0,-239.097	0/1:83:37,46:37:1328:46:1637:-118.701,0,-94.8181	0/1:101:44,57:44:1568:57:2020:-150.355,0,-111.008	0/1:110:45,65:45:1594:65:2320:-174.498,0,-110.579	0/1:44:29,15:29:1036:15:527:-34.1966,0,-73.5233	0/1:107:74,33:74:2644:33:1178:-72.4052,0,-189.496	0/1:74:54,20:54:1932:20:716:-41.9111,0,-139.562	0/1:90:22,68:22:779:68:2432:-189.068,0,-43.2695	0/1:148:51,97:51:1809:97:3429:-260.033,0,-118.155
chr03	1019018	.	TG	CG	121245	PASS	AB=0.68707;ABP=3052.08;AC=100;AF=0.531915;AN=188;AO=7014;CIGAR=1X1M;DP=10162;DPB=10162;DPRA=0;EPP=15207.7;EPPR=6754.16;GTI=13;LEN=1;MEANALT=1.19149;MQM=44.569;MQMR=59.3309;NS=94;NUMALT=1;ODDS=0.923608;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247020;QR=110600;RO=3125;RPL=7014;RPP=15233.7;RPPR=6754.16;RPR=0;RUN=1;SAF=3;SAP=15207.7;SAR=7011;SRF=0;SRP=6788.86;SRR=3125;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:4,32:4:144:32:1092:-82.8535,0,-2.47654	0/1:115:18,97:18:648:97:3400:-258.06,0,-24.0158	0/1:88:19,69:19:684:69:2394:-179.56,0,-35.382	0/1:167:51,116:51:1804:116:4146:-319.421,0,-111.979	0/1:71:24,47:24:856:47:1657:-126.378,0,-55.8952	0/1:51:16,32:16:572:32:1144:-87.6894,0,-36.9964	0/1:136:57,79:57:2028:79:2806:-208.673,0,-141.837	0/1:117:25,92:25:877:92:3204:-238.432,0,-44.0117	0/1:154:59,94:59:2057:94:3347:-252.56,0,-138.785	0/1:134:45,89:45:1592:89:3153:-240.896,0,-103.208	0/1:69:25,44:25:880:44:1568:-119.482,0,-58.7309	0/1:115:54,61:54:1916:61:2161:-158.255,0,-138.055	0/1:103:42,61:42:1488:61:2183:-164.236,0,-103.153	0/1:79:22,56:22:782:56:1991:-154.091,0,-46.8532	0/1:89:42,47:42:1497:47:1668:-121.347,0,-108.214	0/1:70:39,31:39:1367:31:1112:-78.637,0,-102.232	0/1:72:25,47:25:874:47:1651:-125.857,0,-57.1248	0/1:84:35,46:35:1256:46:1638:-121.461,0,-88.501	0/1:52:19,33:19:667:33:1178:-89.5555,0,-44.7006	0/1:223:44,178:44:1566:178:6366:-499.88,0,-73.9735	0/1:187:76,111:76:2696:111:3904:-292.362,0,-186.522	0/1:97:16,81:16:561:81:2796:-207.608,0,-21.6179	0/1:88:17,71:17:606:71:2509:-197.194,0,-28.3672	0/1:169:68,101:68:2424:101:3553:-265.4,0,-167.417	0/1:72:17,55:17:584:55:1913:-142.165,0,-31.2069	0/1:254:59,195:59:2110:195:6727:-500.099,0,-113.67	0/1:274:97,177:97:3421:177:6309:-478.913,0,-225.233	0/1:45:17,28:17:590:28:996:-75.7777,0,-39.1621	0/1:223:52,171:52:1834:171:5968:-449.236,0,-98.1389	0/1:153:52,101:52:1862:101:3593:-273.508,0,-121.776	0/1:116:48,68:48:1713:68:2412:-179.988,0,-119.533	1/1:4:0,4:0:0:4:143:-12.8754,-1.20412,0	0/1:9:2,7:2:72:7:248:-19.8094,0,-4.12745	0/1:6:2,4:2:67:4:144:-11.4351,0,-4.55666	0/1:5:1,4:1:36:4:144:-11.7166,0,-2.09312	0/1:9:2,7:2:70:7:247:-18.4492,0,-3.93806	0/1:291:125,165:125:4426:165:5898:-439.004,0,-310.861	0/1:145:58,87:58:2063:87:3098:-232.996,0,-142.246	0/1:83:16,67:16:565:67:2349:-178.347,0,-26.1954	1/1:4:0,4:0:0:4:144:-13.2217,-1.20412,0	0/1:652:156,496:156:5545:496:17456:-1319.63,0,-302.691	0/1:53:16,37:16:567:37:1291:-93.7717,0,-35.085	0/1:126:36,90:36:1261:90:3159:-235.924,0,-75.4673	0/1:85:19,66:19:677:66:2270:-169.86,0,-35.6707	0/1:72:27,45:27:946:45:1590:-120.098,0,-63.7775	1/1:104:8,96:8:277:96:3298:-255.379,-6.04201,0	0/1:138:33,105:33:1169:105:3698:-287.545,0,-63.9563	0/1:151:41,109:41:1446:109:3880:-300.028,0,-84.8638	0/1:158:37,121:37:1322:121:4283:-333.776,0,-71.7198	0/1:111:15,96:15:527:96:3326:-250.868,0,-14.3456	0/1:148:45,103:45:1577:103:3648:-279.848,0,-96.877	1/1:6:0,5:0:0:5:168:-14.7292,-1.50515,0	0/1:227:43,183:43:1539:183:6443:-489.514,0,-70.3845	0/1:57:8,49:8:280:49:1760:-140.439,0,-8.3808	0/1:43:20,23:20:699:23:816:-60.3249,0,-50.284	0/1:114:19,95:19:680:95:3310:-247.433,0,-26.5079	0/1:69:15,54:15:538:54:1933:-151.727,0,-27.9847	1/1:8:0,8:0:0:8:280:-24.3546,-2.40824,0	0/1:11:3,8:3:104:8:266:-19.7659,0,-6.39148	0/1:80:24,55:24:825:55:1914:-140.125,0,-50.525	0/1:151:59,92:59:2060:92:3261:-245.079,0,-139.847	0/1:9:2,7:2:72:7:252:-20.1332,0,-4.12745	0/1:90:16,74:16:576:74:2577:-197.211,0,-25.0819	0/1:235:85,147:85:3011:147:5191:-391.229,0,-198.875	0/1:57:21,36:21:741:36:1237:-88.2177,0,-49.8536	0/1:79:23,56:23:811:56:1975:-152.313,0,-49.4222	0/1:197:63,134:63:2234:134:4735:-362.117,0,-142.019	0/1:111:18,92:18:642:92:3188:-237.983,0,-24.6952	0/1:32:9,23:9:308:23:810:-63.0712,0,-18.4176	0/1:85:54,31:54:1923:31:1089:-72.0519,0,-147.736	0/1:68:16,52:16:567:52:1783:-132.01,0,-30.8863	0/1:14:8,6:8:277:6:216:-15.403,0,-21.0507	0/1:174:57,117:57:2024:117:4164:-318.8,0,-129.983	0/1:82:23,59:23:786:59:2099:-162.869,0,-46.366	0/1:151:68,81:68:2364:81:2879:-212.456,0,-166.819	0/1:181:60,121:60:2126:121:4339:-332.122,0,-137.035	0/1:109:12,96:12:425:96:3345:-251.813,0,-5.11767	0/1:110:28,81:28:980:81:2885:-224.166,0,-55.3039	1/1:5:0,5:0:0:5:176:-15.3125,-1.50515,0	0/1:105:43,61:43:1525:61:2158:-161.187,0,-105.855	0/1:118:54,64:54:1907:64:2266:-166.793,0,-136.252	0/1:167:78,89:78:2775:89:3175:-232.502,0,-198.83	0/1:93:22,71:22:779:71:2395:-176.149,0,-42.3776	0/1:73:18,55:18:637:55:1888:-139.029,0,-35.669	0/1:94:33,61:33:1179:61:2097:-151.142,0,-78.1193	0/1:149:40,109:40:1402:109:3746:-274.808,0,-81.52	0/1:82:37,45:37:1312:45:1608:-118.842,0,-93.6775	0/1:101:45,56:45:1610:56:2012:-149.601,0,-114.786	0/1:111:46,65:46:1647:65:2336:-175.582,0,-115.048	0/1:46:12,34:12:423:34:1172:-86.6399,0,-24.536	0/1:105:28,77:28:986:77:2674:-196.336,0,-56.5945	0/1:73:20,53:20:705:53:1814:-131.965,0,-41.7987	0/1:87:22,65:22:769:65:2311:-179.759,0,-43.3275	0/1:146:50,96:50:1783:96:3424:-260.824,0,-116.773
chr03	1019028	.	G	T	80587.8	PASS	AB=0.535181;ABP=108.894;AC=96;AF=0.510638;AN=188;AO=5281;CIGAR=1X;DP=9859;DPB=9859;DPRA=0;EPP=11470.6;EPPR=9924.47;GTI=4;LEN=1;MEANALT=1.07447;MQM=47.2376;MQMR=51.1821;NS=94;NUMALT=1;ODDS=1.24707;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178554;QR=163509;RO=4569;RPL=5281;RPP=11470.6;RPPR=9924.47;RPR=0;RUN=1;SAF=0;SAP=11470.6;SAR=5281;SRF=0;SRP=9924.47;SRR=4569;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:21,13:21:756:13:430:-28.5611,0,-51.1087	0/1:112:65,47:65:2332:47:1597:-108.968,0,-157.245	0/1:88:51,37:51:1821:37:1218:-82.5593,0,-125.122	0/1:166:51,114:51:1824:114:3902:-297.4,0,-114.047	0/1:68:24,44:24:860:44:1488:-110.084,0,-57.1071	0/1:49:16,33:16:572:33:1115:-85.3611,0,-37.0548	0/1:132:56,76:56:1996:76:2579:-189.34,0,-140.172	0/1:110:79,31:79:2844:31:1058:-61.1386,0,-204.777	0/1:150:59,91:59:2112:91:3108:-232.446,0,-144.994	0/1:129:44,84:44:1576:84:2844:-214.304,0,-103.217	0/1:66:25,41:25:900:41:1381:-103.771,0,-61.4306	0/1:110:53,57:53:1883:57:1968:-142.984,0,-136.591	0/1:98:40,58:40:1432:58:1996:-149.228,0,-99.6238	0/1:79:22,57:22:788:57:1990:-153.87,0,-47.4528	0/1:87:41,46:41:1467:46:1592:-114.533,0,-106.109	0/1:69:39,30:39:1391:30:1035:-72.0519,0,-104.694	0/1:69:25,44:25:900:44:1497:-112.803,0,-60.3044	0/1:80:37,43:37:1332:43:1459:-105.377,0,-95.9586	0/1:46:18,28:18:639:28:955:-71.4392,0,-43.9905	0/1:215:46,167:46:1618:167:5638:-438.688,0,-80.9874	0/1:179:76,103:76:2708:103:3420:-251.827,0,-189.988	0/1:98:71,27:71:2536:27:933:-54.2136,0,-176.113	0/1:84:18,66:18:648:66:2172:-168.964,0,-33.3507	0/1:162:68,94:68:2440:94:3211:-236.812,0,-170.978	0/1:73:50,23:50:1788:23:786:-48.6897,0,-127.077	0/1:253:159,94:159:5704:94:3080:-198.001,0,-394.225	0/1:267:99,168:99:3522:168:5651:-422.067,0,-236.322	0/1:42:16,26:16:572:26:913:-68.2918,0,-38.2988	0/1:222:120,102:120:4304:102:3421:-239.133,0,-292.025	0/1:150:56,93:56:2004:93:3139:-234.571,0,-134.211	0/1:111:47,64:47:1677:64:2132:-154.787,0,-117.799	0/1:4:1,3:1:36:3:93:-7.42549,0,-2.04204	0/1:9:2,7:2:72:7:252:-20.1607,0,-4.12745	0/1:4:2,2:2:72:2:72:-5.5854,0,-5.6326	0/1:5:1,4:1:36:4:144:-11.7166,0,-2.09312	0/1:10:8,2:8:288:2:72:-3.77922,0,-21.2175	0/1:278:124,154:124:4439:154:5205:-381.325,0,-315.886	0/1:135:58,77:58:2080:77:2543:-186.295,0,-146.786	0/1:79:44,35:44:1576:35:1217:-85.3364,0,-108.752	1/1:4:0,4:0:0:4:140:-12.8663,-1.20412,0	0/1:645:336,307:336:12043:307:10363:-730.779,0,-823.7	0/1:50:39,11:39:1404:11:347:-16.3128,0,-103.352	0/1:125:72,53:72:2588:53:1771:-120.868,0,-183.97	0/1:84:50,34:50:1787:34:1212:-82.6163,0,-122.882	0/1:68:29,38:29:1044:38:1258:-92.2118,0,-73.0071	0/1:101:63,38:63:2260:38:1262:-81.9084,0,-150.981	0/1:133:32,101:32:1152:101:3376:-259.545,0,-63.9355	0/1:144:40,103:40:1432:103:3415:-261.721,0,-85.3439	0/1:152:37,115:37:1328:115:3682:-282.177,0,-74.0657	0/1:111:64,47:64:2304:47:1594:-107.966,0,-154.091	0/1:138:44,94:44:1576:94:3150:-239.128,0,-98.4766	1/1:6:0,6:0:0:6:204:-18.3792,-1.80618,0	0/1:222:112,110:112:3974:110:3615:-255.427,0,-265.07	0/1:54:8,46:8:280:46:1527:-120.633,0,-9.28368	0/1:40:21,19:21:752:19:642:-45.6958,0,-55.8951	0/1:114:76,38:76:2724:38:1302:-82.3819,0,-189.639	0/1:65:16,49:16:572:49:1672:-129.638,0,-31.3858	0/1:8:4,4:4:144:4:121:-8.73897,0,-9.38597	0/1:9:7,2:7:252:2:53:-2.31469,0,-18.8714	0/1:80:54,26:54:1936:26:921:-58.1991,0,-139.883	0/1:147:59,88:59:2095:88:3083:-228.932,0,-144.208	0/1:7:2,5:2:72:5:165:-12.9497,0,-4.72951	0/1:88:44,44:44:1565:44:1466:-104.933,0,-104.697	0/1:227:86,141:86:3080:141:4705:-350.497,0,-206.792	0/1:55:44,11:44:1568:11:358:-14.7078,0,-116.061	0/1:77:22,55:22:788:55:1854:-142.16,0,-47.9591	0/1:186:62,124:62:2224:124:4130:-310.044,0,-144.432	0/1:109:71,38:71:2552:38:1235:-77.0919,0,-177.831	0/1:30:8,22:8:288:22:765:-59.7125,0,-17.2365	0/1:83:54,29:54:1940:29:983:-63.1831,0,-149.868	0/1:69:45,24:45:1604:24:794:-50.1516,0,-112.437	0/1:13:8,5:8:284:5:157:-10.4437,0,-21.99	0/1:167:57,110:57:2052:110:3764:-285.438,0,-134.608	0/1:83:22,61:22:788:61:2043:-157.195,0,-46.2578	0/1:145:68,77:68:2428:77:2606:-189.76,0,-173.53	0/1:170:60,110:60:2148:110:3791:-286.369,0,-142.283	0/1:106:70,36:70:2496:36:1144:-70.2338,0,-173.653	0/1:104:27,77:27:972:77:2653:-205.744,0,-56.1373	0/1:5:3,2:3:108:2:72:-5.28437,0,-7.52946	0/1:103:44,59:44:1561:59:1950:-143.084,0,-109.739	0/1:115:55,60:55:1968:60:2014:-144.442,0,-142.629	0/1:167:78,89:78:2800:89:3057:-221.849,0,-201.064	0/1:90:64,26:64:2291:26:922:-55.5407,0,-160.699	0/1:71:49,22:49:1751:22:776:-47.8295,0,-124.183	0/1:93:69,24:69:2472:24:848:-48.0132,0,-180.119	0/1:142:100,42:100:3563:42:1488:-89.194,0,-253.583	0/1:79:37,42:37:1328:42:1421:-101.975,0,-96.0222	0/1:99:44,55:44:1580:55:1953:-144.945,0,-112.69	0/1:108:46,62:46:1652:62:2150:-159.999,0,-116.401	0/1:45:31,14:31:1098:14:481:-29.7792,0,-78.821	0/1:106:77,29:77:2755:29:1032:-60.6376,0,-198.104	0/1:71:55,16:55:1980:16:538:-26.9689,0,-143.928	0/1:81:22,59:22:777:59:2006:-155.036,0,-45.7819	0/1:143:50,93:50:1784:93:3217:-243.169,0,-117.413
chr03	1147884	.	A	C	232560	PASS	AB=0.490196;ABP=7.22551;AC=154;AF=0.819149;AN=188;AO=10823;CIGAR=1X;DP=13422;DPB=13422;DPRA=0;EPP=23496.2;EPPR=5635.81;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.4856;MQMR=59.8928;NS=94;NUMALT=1;ODDS=0.658259;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=385094;QR=92794;RO=2594;RPL=1;RPP=23496.2;RPPR=5635.81;RPR=10822;RUN=1;SAF=0;SAP=23504.9;SAR=10823;SRF=0;SRP=5635.81;SRR=2594;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:5,26:5:180:26:908:-72.0574,0,-7.21181	0/1:209:136,73:136:4865:73:2605:-171.725,0,-374.104	0/1:161:80,81:80:2872:81:2912:-213.815,0,-210.237	1/1:432:1,431:1:36:431:15328:-1374.71,-126.447,0	1/1:104:1,103:1:36:103:3658:-325.771,-27.7088,0	1/1:75:1,74:1:36:74:2625:-232.856,-18.979,0	1/1:240:0,240:0:0:240:8502:-764.747,-72.2472,0	0/1:188:99,89:99:3543:89:3164:-228.265,0,-262.485	1/1:142:2,140:2:72:140:4991:-442.39,-35.9095,0	1/1:123:0,123:0:0:123:4397:-395.874,-37.0267,0	1/1:44:0,44:0:0:44:1559:-140.575,-13.2453,0	1/1:81:0,81:0:0:81:2892:-260.5,-24.3834,0	1/1:99:0,99:0:0:99:3522:-317.072,-29.802,0	1/1:59:0,59:0:0:59:2105:-189.667,-17.7608,0	1/1:92:0,92:0:0:92:3258:-293.43,-27.6948,0	1/1:58:0,58:0:0:58:2045:-184.308,-17.4597,0	1/1:82:0,82:0:0:82:2905:-261.242,-24.6845,0	1/1:73:0,73:0:0:73:2597:-233.944,-21.9752,0	1/1:43:0,43:0:0:43:1525:-137.524,-12.9443,0	1/1:459:0,459:0:0:459:16375:-1472.12,-138.173,0	1/1:249:0,249:0:0:249:8861:-797.114,-74.9565,0	0/1:190:118,72:118:4223:72:2569:-174.261,0,-323.036	1/1:161:0,161:0:0:161:5737:-516.429,-48.4658,0	1/1:59:0,59:0:0:59:2088:-188.161,-17.7608,0	0/1:103:60,43:60:2131:43:1544:-107.589,0,-161.044	0/1:430:192,238:192:6873:238:8463:-631.897,0,-489.172	1/1:289:0,289:0:0:289:10298:-925.459,-86.9977,0	1/1:49:0,49:0:0:49:1744:-157.235,-14.7505,0	0/1:503:263,239:263:9423:239:8505:-614.065,0,-696.519	1/1:246:4,242:4:140:242:8644:-764.437,-61.1172,0	1/1:186:0,186:0:0:186:6628:-595.855,-55.9916,0	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	1/1:20:0,20:0:0:20:712:-64.3923,-6.0206,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:255:0,255:0:0:255:9066:-815.641,-76.7627,0	1/1:239:1,238:1:36:238:8459:-757.684,-68.3479,0	0/1:76:36,40:36:1284:40:1432:-106.299,0,-92.977	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:255:106,149:106:3808:149:5306:-400.85,0,-266.136	0/1:58:32,26:32:1148:26:905:-64.2516,0,-86.1701	0/1:248:114,134:114:4087:134:4783:-355.707,0,-293.359	0/1:107:47,59:47:1684:59:2091:-156.303,0,-119.716	1/1:83:0,83:0:0:83:2937:-264.536,-24.9855,0	0/1:165:79,86:79:2836:86:3069:-226.757,0,-205.711	1/1:190:1,189:1:36:189:6729:-600.841,-53.5974,0	1/1:244:0,244:0:0:244:8687:-781.538,-73.4513,0	1/1:159:0,159:0:0:159:5672:-510.465,-47.8638,0	0/1:218:99,119:99:3551:119:4245:-316.595,0,-254.173	1/1:209:1,208:1:36:208:7417:-663.94,-59.317,0	1/1:17:0,17:0:0:17:612:-55.4041,-5.11751,0	0/1:179:95,84:95:3416:84:2993:-215.63,0,-253.76	1/1:113:0,112:0:0:112:4015:-360.203,-33.7154,0	1/1:18:0,18:0:0:18:638:-57.2469,-5.41854,0	0/1:201:114,87:114:4061:87:3099:-218.606,0,-305.17	1/1:82:2,80:2:72:80:2831:-248.024,-17.8477,0	0/1:23:12,11:12:417:11:396:-29.012,0,-30.9365	0/1:17:8,9:8:284:9:324:-24.3801,0,-20.7858	1/1:62:0,62:0:0:62:2224:-200.413,-18.6639,0	1/1:130:1,129:1:36:129:4588:-409.435,-35.5356,0	1/1:3:0,3:0:0:3:108:-10.0742,-0.90309,0	0/1:361:181,180:181:6471:180:6424:-469.574,0,-473.789	1/1:305:1,304:1:36:304:10799:-967.119,-88.2159,0	0/1:69:36,33:36:1288:33:1153:-82.6031,0,-95.4525	1/1:187:1,186:1:36:186:6599:-590.366,-52.6943,0	1/1:283:1,282:1:36:282:9919:-888.55,-81.5932,0	0/1:268:175,93:175:6272:93:3325:-218.641,0,-483.897	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:88:0,88:0:0:88:3114:-280.472,-26.4906,0	0/1:96:45,51:45:1612:51:1828:-135.899,0,-116.471	1/1:14:0,14:0:0:14:504:-45.6953,-4.21442,0	1/1:126:0,125:0:0:125:4446:-399.674,-37.6288,0	1/1:87:0,87:0:0:87:3067:-276.241,-26.1896,0	1/1:184:1,183:1:32:183:6473:-579.345,-52.1902,0	1/1:313:1,312:1:36:312:11120:-996.703,-90.6241,0	0/1:162:80,82:80:2868:82:2936:-215.46,0,-209.589	1/1:185:0,185:0:0:185:6629:-596.608,-55.6906,0	0/1:12:4,8:4:144:8:279:-21.8352,0,-9.70126	1/1:164:1,163:1:32:163:5797:-518.553,-46.1696,0	1/1:216:0,215:0:0:215:7603:-683.3,-64.7215,0	1/1:350:0,350:0:0:350:12518:-1125.18,-105.361,0	0/1:165:79,86:79:2798:86:3069:-226.745,0,-202.391	0/1:77:49,28:49:1736:28:976:-64.9657,0,-133.305	0/1:104:54,50:54:1923:50:1796:-130.611,0,-142.03	0/1:163:64,99:64:2287:99:3513:-267.266,0,-157.023	1/1:62:0,62:0:0:62:2207:-198.881,-18.6639,0	1/1:98:0,98:0:0:98:3457:-311.193,-29.5009,0	1/1:77:0,77:0:0:77:2722:-244.863,-23.1793,0	0/1:35:13,22:13:468:22:781:-60.0665,0,-31.9236	0/1:74:25,49:25:896:49:1725:-133.211,0,-58.6841	0/1:75:54,21:54:1932:21:752:-45.4267,0,-151.562	1/1:205:1,204:1:21:204:7290:-653.032,-59.6112,0	1/1:132:0,132:0:0:132:4689:-422.137,-39.736,0
chr03	1332825	.	C	T	12178	PASS	AB=0.319961;ABP=873.264;AC=32;AF=0.172043;AN=186;AO=997;CIGAR=1X;DP=10969;DPB=10969;DPRA=0.832186;EPP=2167.97;EPPR=21656.9;GTI=6;LEN=1;MEANALT=1;MQM=59.7864;MQMR=58.5458;NS=93;NUMALT=1;ODDS=0.234846;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35757;QR=352881;RO=9972;RPL=0;RPP=2167.97;RPPR=173.949;RPR=997;RUN=1;SAF=0;SAP=2167.97;SAR=997;SRF=5429;SRP=173.949;SRR=4543;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:26,9:26:932:9:324:-18.9647,0,-72.8323	0/1:115:78,37:78:2761:37:1324:-84.8378,0,-213.601	0/1:137:83,54:83:2949:54:1929:-132.638,0,-224.316	0/0:292:292,0:292:10288:0:0:0,-87.9008,-924.445	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2621	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.335	0/0:161:161,0:161:5665:0:0:0,-48.4658,-509.744	0/1:133:99,34:99:3494:34:1224:-70.4207,0,-274.287	0/0:145:145,0:145:5107:0:0:0,-43.6493,-459.407	0/0:260:260,0:260:9179:0:0:0,-78.2678,-824.229	0/0:141:141,0:141:4920:0:0:0,-42.4452,-442.849	0/0:174:174,0:174:6157:0:0:0,-52.3792,-553.887	0/0:149:149,0:149:5316:0:0:0,-44.8535,-478.141	0/0:163:163,0:163:5779:0:0:0,-49.0679,-519.804	0/0:131:131,0:131:4613:0:0:0,-39.4349,-415.126	0/0:108:108,0:108:3863:0:0:0,-32.5112,-347.627	0/0:130:130,0:130:4548:0:0:0,-39.1339,-408.231	0/0:130:130,0:130:4608:0:0:0,-39.1339,-413.95	0/0:78:78,0:78:2772:0:0:0,-23.4803,-249.423	0/0:130:130,0:130:4626:0:0:0,-39.1339,-416.406	0/0:223:223,0:223:7879:0:0:0,-67.1297,-708.399	0/1:49:23,26:23:811:26:936:-69.7952,0,-58.5136	0/0:127:127,0:127:4505:0:0:0,-38.2308,-405.148	0/0:140:140,0:140:4962:0:0:0,-42.1442,-446.161	0/1:36:13,23:13:468:23:824:-63.6462,0,-31.6226	0/1:233:162,71:162:5704:71:2526:-157.435,0,-443.184	0/0:225:225,0:225:8009:0:0:0,-67.7317,-719.744	0/0:82:82,0:82:2903:0:0:0,-24.6845,-261.273	0/1:176:108,68:108:3853:68:2444:-167.22,0,-293.396	0/0:207:206,1:206:7339:1:36:0,-58.7149,-656.321	0/0:135:135,0:135:4788:0:0:0,-40.639,-430.827	.:.:.:.:.:.:.:.	0/0:17:17,0:17:588:0:0:0,-5.11751,-53.2422	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7406	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:403:403,0:403:14127:0:0:0,-121.315,-1269.92	0/0:112:112,0:112:3977:0:0:0,-33.7154,-358.013	0/1:73:50,23:50:1792:23:805:-50.7923,0,-139.442	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:132:91,41:91:3233:41:1461:-92.0481,0,-251.265	0/1:45:30,15:30:1076:15:540:-34.6082,0,-83.6065	0/1:61:41,20:41:1464:20:720:-46.7659,0,-113.481	0/1:97:82,15:82:2930:15:540:-19.7366,0,-234.63	0/0:144:144,0:144:5049:0:0:0,-43.3483,-454.28	0/1:70:43,27:43:1536:27:972:-66.7258,0,-117.254	0/0:106:106,0:106:3769:0:0:0,-31.9092,-339.24	0/0:156:156,0:156:5504:0:0:0,-46.9607,-494.944	0/0:79:79,0:79:2804:0:0:0,-23.7814,-252.44	0/1:147:115,32:115:4077:32:1152:-59.7387,0,-322.691	0/0:134:134,0:134:4747:0:0:0,-40.338,-427.254	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1201	0/1:64:38,26:38:1345:26:936:-65.2931,0,-101.922	0/0:73:73,0:73:2583:0:0:0,-21.9752,-232.629	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.6415	0/1:118:70,48:70:2479:48:1728:-120.284,0,-187.633	0/0:31:31,0:31:1079:0:0:0,-9.33193,-97.3183	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3024	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0738	0/0:136:136,0:136:4849:0:0:0,-40.9401,-435.675	0/0:187:186,1:186:6553:1:36:0,-52.6943,-585.71	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.061	0/1:155:134,21:134:4753:21:741:-20.3519,0,-380.419	0/0:206:206,0:206:7288:0:0:0,-62.0122,-655.189	0/1:58:29,29:29:1044:29:1035:-76.0033,0,-76.7417	0/0:102:102,0:102:3636:0:0:0,-30.7051,-327.402	0/0:126:126,0:126:4457:0:0:0,-37.9298,-401.017	0/1:182:81,101:81:2878:101:3632:-271.043,0,-204.254	0/0:129:129,0:129:4571:0:0:0,-38.8329,-410.717	0/0:110:110,0:110:3909:0:0:0,-33.1133,-351.391	0/1:90:74,16:74:2632:16:576:-25.0547,0,-209.712	0/0:45:45,0:45:1559:0:0:0,-13.5463,-140.417	0/0:105:105,0:105:3717:0:0:0,-31.6081,-334.491	0/0:177:177,0:177:6295:0:0:0,-53.2823,-564.985	0/0:189:189,0:189:6710:0:0:0,-56.8947,-603.729	0/0:188:188,0:188:6673:0:0:0,-56.5936,-600.447	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.4173	0/0:276:276,0:276:9713:0:0:0,-83.0843,-872.192	0/0:11:11,0:11:388:0:0:0,-3.31133,-34.6184	0/0:125:124,1:124:4399:1:36:0,-34.0305,-392.29	0/0:73:73,0:73:2490:0:0:0,-21.9752,-224.136	0/0:169:164,5:164:5816:5:180:0,-34.322,-506.313	0/1:102:85,17:85:2977:17:612:-24.0783,0,-237.242	0/1:92:66,26:66:2364:26:928:-56.1435,0,-185.253	0/1:95:77,18:77:2724:18:648:-30.054,0,-216.617	0/1:212:158,54:158:5563:54:1944:-111.418,0,-436.763	0/0:61:61,0:61:2137:0:0:0,-18.3628,-192.541	0/0:133:133,0:133:4670:0:0:0,-40.037,-419.605	0/0:159:159,0:159:5615:0:0:0,-47.8638,-504.86	0/1:107:78,29:78:2804:29:1044:-62.0646,0,-220.23	0/1:139:90,49:90:3186:49:1764:-117.201,0,-245.028	0/1:72:39,33:39:1375:33:1188:-85.5529,0,-102.349	0/0:251:251,0:251:8911:0:0:0,-75.5585,-801.386	0/0:238:238,0:238:8454:0:0:0,-71.6451,-760.441
chr03	1542629	.	A	T	19071.4	PASS	AB=0.494845;ABP=3.52519;AC=37;AF=0.198925;AN=186;AO=1142;CIGAR=1X;DP=6107;DPB=6107;DPRA=1.3393;EPP=2482.83;EPPR=10784.4;GTI=1;LEN=1;MEANALT=1;MQM=59.9842;MQMR=59.9899;NS=93;NUMALT=1;ODDS=0.93213;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40903;QR=177799;RO=4965;RPL=1130;RPP=2379.7;RPPR=10000.1;RPR=12;RUN=1;SAF=12;SAP=2379.7;SAR=1130;SRF=92;SRP=10000.1;SRR=4873;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:27,20:27:968:20:720:-50.9804,0,-73.289	0/1:54:21,33:21:756:33:1167:-89.0808,0,-52.1116	0/1:68:27,41:27:964:41:1464:-111.586,0,-66.6068	0/0:126:123,3:123:4380:3:108:0,-27.8546,-384.301	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.899	0/1:121:67,54:67:2396:54:1924:-137.012,0,-179.473	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:113:112,1:112:4008:1:36:0,-30.4181,-357.311	0/0:96:94,2:94:3372:2:72:0,-22.0622,-296.859	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.73	0/0:91:90,1:90:3232:1:36:0,-23.7955,-287.503	0/0:55:54,1:54:1936:1:36:0,-12.9584,-170.917	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:38:37,1:37:1328:1:36:0,-7.84086,-116.224	0/0:100:100,0:100:3581:0:0:0,-30.103,-322.495	0/0:104:103,1:103:3692:1:36:0,-27.7088,-328.884	0/1:47:24,23:24:852:23:828:-60.6957,0,-62.852	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.725	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:78:39,39:39:1392:39:1400:-102.819,0,-102.099	0/1:148:87,61:87:3124:61:2188:-152.633,0,-236.833	0/0:132:132,0:132:4728:0:0:0,-39.736,-425.679	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:122:62,60:62:2224:60:2145:-156.59,0,-163.698	0/0:69:66,3:66:2364:3:108:0,-10.6959,-202.943	0/0:58:57,1:57:2036:1:36:0,-13.8615,-179.914	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:181:178,3:178:6388:3:108:0,-44.4113,-564.932	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/1:62:31,31:31:1116:31:1112:-81.7275,0,-82.0878	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:77:39,38:39:1396:38:1364:-99.8814,0,-102.76	0/1:32:11,21:11:396:21:756:-58.7343,0,-26.3498	0/1:119:81,38:81:2908:38:1364:-87.2381,0,-226.132	0/1:56:28,28:28:1008:28:993:-72.8248,0,-74.1787	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:55:33,22:33:1180:22:780:-53.9631,0,-89.9514	0/0:55:54,1:54:1928:1:36:0,-12.9584,-170.198	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:68:28,40:28:1004:40:1440:-109.428,0,-70.2058	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:67:40,27:40:1440:27:972:-67.6289,0,-109.729	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:61:27,34:27:972:34:1201:-90.0308,0,-69.4351	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:8:5,3:5:172:3:108:-7.66693,0,-13.4097	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:115:114,1:114:4075:1:36:0,-31.0202,-363.338	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:84:35,49:35:1256:49:1756:-133.037,0,-88.0588	0/0:117:117,0:117:4166:0:0:0,-35.2205,-375.121	0/1:49:27,22:27:972:22:792:-56.8552,0,-73.0474	0/0:66:66,0:66:2344:0:0:0,-19.868,-211.218	0/0:87:85,2:85:3040:2:72:0,-19.3529,-266.993	0/1:98:20,78:20:720:78:2804:-223.098,0,-35.6278	0/0:48:46,2:46:1644:2:72:0,-7.61272,-141.412	0/0:38:35,3:35:1248:3:108:0,-1.36397,-102.55	0/1:59:35,24:35:1256:24:864:-60.3218,0,-95.5845	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:176:175,1:175:6260:1:36:0,-49.383,-559.707	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.006	0/1:72:39,33:39:1392:33:1184:-85.1942,0,-103.905	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/1:63:32,31:32:1148:31:1112:-81.4265,0,-84.6649	0/1:83:35,48:35:1260:48:1728:-130.82,0,-88.72	0/1:57:31,26:31:1112:26:936:-67.387,0,-83.2326	0/1:130:78,52:78:2800:52:1864:-128.906,0,-213.106	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:76:75,1:75:2672:1:36:0,-19.28,-237.128	0/0:78:77,1:77:2752:1:36:0,-19.8821,-244.324	0/1:46:21,25:21:748:25:892:-66.7523,0,-53.7979	0/1:111:56,55:56:2012:55:1961:-143.349,0,-147.939	0/1:77:34,43:34:1216:43:1540:-115.714,0,-86.5673	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532
chr03	1768922	.	T	G	113467	PASS	AB=0.495081;ABP=3.48033;AC=151;AF=0.811828;AN=186;AO=5224;CIGAR=1X;DP=6367;DPB=6367;DPRA=0;EPP=11346.8;EPPR=2461.15;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.8679;MQMR=59.9851;NS=93;NUMALT=1;ODDS=2.01899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186646;QR=40683;RO=1140;RPL=0;RPP=11346.8;RPPR=2461.15;RPR=5224;RUN=1;SAF=5224;SAP=11346.8;SAR=0;SRF=1140;SRP=2478.49;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:21,23:21:748:23:828:-61.5988,0,-54.4	0/1:42:23,19:23:794:19:680:-48.8859,0,-59.13	0/1:149:89,60:89:3172:60:2152:-149.094,0,-240.796	1/1:222:0,222:0:0:222:7910:-711.859,-66.8287,0	0/1:35:4,31:4:144:31:1112:-89.8553,0,-2.77757	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:65:0,65:0:0:65:2322:-209.223,-19.567,0	0/1:62:31,31:31:1112:31:1104:-81.0068,0,-81.7275	1/1:30:0,30:0:0:30:1050:-94.8063,-9.0309,0	1/1:64:0,64:0:0:64:2281:-205.549,-19.2659,0	1/1:29:0,29:0:0:29:1040:-93.9002,-8.72987,0	1/1:89:0,89:0:0:89:3192:-286.947,-26.7917,0	1/1:70:0,70:0:0:70:2497:-224.945,-21.0721,0	1/1:35:0,35:0:0:35:1240:-111.89,-10.5361,0	1/1:76:0,76:0:0:76:2728:-245.761,-22.8783,0	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:17:0,17:0:0:17:599:-54.0472,-5.11751,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:149:0,149:0:0:149:5321:-478.777,-44.8535,0	1/1:185:2,183:2:68:183:6538:-582.034,-49.2328,0	0/1:95:58,37:58:2080:37:1332:-91.5262,0,-158.872	1/1:83:0,83:0:0:83:2967:-267.034,-24.9855,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:186:86,100:86:3076:100:3576:-266.052,0,-221.077	1/1:165:0,165:0:0:165:5874:-528.723,-49.67,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:155:79,76:79:2832:76:2728:-199.102,0,-208.459	1/1:73:1,72:1:36:72:2569:-226.826,-18.3769,0	1/1:85:1,84:1:36:84:3000:-266.633,-21.9893,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	1/1:209:0,209:0:0:209:7466:-671.973,-62.9153,0	1/1:75:0,75:0:0:75:2680:-241.218,-22.5773,0	0/1:36:16,20:16:572:20:720:-54.2917,0,-40.9763	.:.:.:.:.:.:.:.	0/1:77:40,37:40:1425:37:1332:-96.8969,0,-105.366	0/1:27:15,12:15:540:12:428:-30.731,0,-40.8087	0/1:96:48,48:48:1709:48:1720:-126.187,0,-125.195	0/1:67:33,34:33:1180:34:1216:-89.5771,0,-86.339	1/1:55:0,55:0:0:55:1976:-178.113,-16.5567,0	0/1:73:27,46:27:968:46:1652:-126.992,0,-65.4622	1/1:100:0,100:0:0:100:3576:-322.03,-30.103,0	1/1:115:0,114:0:0:114:4073:-366.526,-34.3174,0	1/1:65:0,65:0:0:65:2317:-208.701,-19.567,0	0/1:74:39,35:39:1365:35:1248:-90.3482,0,-100.867	1/1:87:0,87:0:0:87:3083:-277.692,-26.1896,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:49:33,16:33:1180:16:572:-37.062,0,-91.7576	1/1:12:0,12:0:0:12:432:-39.2203,-3.61236,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:89:54,35:54:1920:35:1256:-86.5087,0,-146.285	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:14:7,7:7:244:7:252:-18.8145,0,-18.085	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:87:0,87:0:0:87:3116:-280.638,-26.1896,0	1/1:5:0,5:0:0:5:165:-15.1744,-1.50515,0	0/1:190:80,110:80:2868:110:3920:-295.793,0,-201.161	1/1:109:0,109:0:0:109:3885:-349.842,-32.8123,0	0/1:28:8,20:8:273:20:716:-56.3389,0,-16.4713	1/1:87:2,85:2:72:85:3048:-267.712,-19.3529,0	1/1:86:0,85:0:0:85:3035:-273.017,-25.5876,0	0/1:108:73,35:73:2612:35:1256:-80.8328,0,-202.817	1/1:16:0,16:0:0:16:557:-50.4556,-4.81648,0	1/1:55:0,55:0:0:55:1960:-176.667,-16.5567,0	0/1:52:25,27:25:900:27:957:-70.7903,0,-65.6675	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:154:1,152:1:36:152:5452:-487.209,-42.8191,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:52:0,52:0:0:52:1849:-166.683,-15.6536,0	1/1:122:0,122:0:0:122:4355:-392.117,-36.7257,0	0/1:34:15,19:15:521:19:676:-50.933,0,-36.9813	1/1:68:1,67:1:36:67:2382:-211.035,-16.8718,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:53:1,52:1:36:52:1868:-164.801,-12.3563,0	1/1:105:0,105:0:0:105:3756:-338.236,-31.6082,0	1/1:166:2,164:2:72:164:5857:-519.908,-43.1343,0	0/1:61:24,37:24:845:37:1324:-101.099,0,-58.0039	0/1:48:25,23:25:896:23:828:-60.3947,0,-66.5109	0/1:40:17,23:17:604:23:824:-62.4375,0,-42.6494	0/1:129:69,60:69:2484:60:2125:-152.683,0,-184.98	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:60:0,60:0:0:60:2133:-192.236,-18.0618,0	1/1:59:0,59:0:0:59:2116:-190.701,-17.7608,0	0/1:16:5,11:5:180:11:395:-31.0757,0,-11.7356	0/1:54:27,27:27:963:27:964:-70.8212,0,-70.7303	0/1:62:37,25:37:1328:25:892:-61.9358,0,-101.158	1/1:188:0,188:0:0:188:6710:-603.956,-56.5936,0	1/1:107:0,107:0:0:107:3838:-345.605,-32.2102,0
chr03	1768937	.	C	G,A	162847	PASS	AB=0.484486,0.515071;ABP=7.72671,7.46105;AC=151,35;AF=0.811828,0.188172;AN=186;AO=5166,1171;CIGAR=1X,1X;DP=6345;DPB=6345;DPRA=0,1.10345;EPP=5945.6,380.192;EPPR=3.73412;GTI=1;LEN=1,1;MEANALT=1.49462,2.02439;MQM=59.8835,59.965;MQMR=60;NS=93;NUMALT=2;ODDS=0.384971;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=184199,41933;QR=108;RO=3;RPL=4463,811;RPP=5945.6,380.192;RPPR=3.73412;RPR=703,360;RUN=1,1;SAF=5166,1171;SAP=11220.8,2545.8;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:45:0,23,22:0:0:23,22:824,792:-132.184,-64.983,-58.0593,-67.5596,0,-60.937	1/2:43:0,19,24:0:0:19,24:680,837:-123.873,-68.4172,-62.6976,-55.8096,0,-48.5849	1/2:145:0,56,89:0:0:56,89:2012,3180:-423.714,-259.577,-242.719,-164.495,0,-137.704	1/1:217:0,217,0:0:0:217,0:7738,0:-696.406,-65.3235,0,-696.406,-65.3235,-696.406	1/2:33:0,29,4:0:0:29,4:1040,144:-96.9343,-12.1095,-3.37963,-85.1845,0,-83.9804	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/1:62:0,62,0:0:0:62,0:2171,0:-195.652,-18.6639,0,-195.652,-18.6639,-195.652	1/2:63:0,31,32:0:0:31,32:1112,1152:-185.057,-94.3572,-85.0253,-91.0594,0,-81.4265	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/1:64:0,63,0:0:0:63,0:2219,0:-199.738,-18.9649,0,-199.738,-18.9649,-199.738	1/1:29:0,29,0:0:0:29,0:1029,0:-92.9207,-8.72987,0,-92.9207,-8.72987,-92.9207	1/1:90:0,90,0:0:0:90,0:3228,0:-290.185,-27.0927,0,-290.185,-27.0927,-290.185	1/1:69:0,69,0:0:0:69,0:2480,0:-223.417,-20.7711,0,-223.417,-20.7711,-223.417	1/1:32:0,32,0:0:0:32,0:1139,0:-102.804,-9.63296,0,-102.804,-9.63296,-102.804	1/1:77:0,77,0:0:0:77,0:2740,0:-246.822,-23.1793,0,-246.822,-23.1793,-246.822	1/1:58:0,58,0:0:0:58,0:2080,0:-187.47,-17.4597,0,-187.47,-17.4597,-187.47	1/1:17:0,17,0:0:0:17,0:597,0:-54.0379,-5.11751,0,-54.0379,-5.11751,-54.0379	1/1:28:0,28,0:0:0:28,0:976,0:-88.1497,-8.42884,0,-88.1497,-8.42884,-88.1497	1/1:15:0,15,0:0:0:15,0:532,0:-48.2131,-4.51545,0,-48.2131,-4.51545,-48.2131	1/1:143:0,143,0:0:0:143,0:5089,0:-458.15,-43.0473,0,-458.15,-43.0473,-458.15	1/1:183:0,181,2:0:0:181,2:6475,72:-582.247,-54.4864,0,-576.372,-48.2518,-575.77	1/2:96:0,37,59:0:0:37,59:1332,2097:-279.865,-171.237,-160.099,-108.986,0,-91.2252	1/1:83:0,83,0:0:0:83,0:2976,0:-267.964,-24.9855,0,-267.964,-24.9855,-267.964	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/2:17:0,6,11:0:0:6,11:216,392:-49.9345,-32.3087,-30.5025,-17.9843,0,-14.673	1/2:189:0,101,88:0:0:101,88:3597,3151:-550.496,-257.324,-226.92,-293.529,0,-267.039	1/1:163:0,163,0:0:0:163,0:5820,0:-523.906,-49.0679,0,-523.906,-49.0679,-523.906	1/1:33:0,33,0:0:0:33,0:1160,0:-104.704,-9.93399,0,-104.704,-9.93399,-104.704	1/2:155:0,74,81:0:0:74,81:2651,2896:-452.693,-236.493,-214.217,-216.558,0,-192.175	1/1:72:0,70,2:0:0:70,2:2484,72:-223.026,-21.0721,0,-217.165,-14.8519,-216.562	1/1:84:0,84,0:0:0:84,0:2965,0:-266.591,-25.2865,0,-266.591,-25.2865,-266.591	1/2:15:0,9,6:0:0:9,6:324,216:-44.4211,-17.9843,-15.2751,-26.7966,0,-24.9904	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/2:7:0,6,1:0:0:6,1:216,36:-20.9217,-3.29724,-1.49106,-17.9843,0,-17.6833	1/1:213:1,212,0:1:36:212,0:7583,0:-678.897,-60.5211,0,-679.198,-63.8184,-682.136	1/1:74:0,74,0:0:0:74,0:2632,0:-236.969,-22.2762,0,-236.969,-22.2762,-236.969	1/2:38:0,20,18:0:0:20,18:720,644:-111.622,-52.8721,-46.8515,-59.1082,0,-53.6896	.:.:.:.:.:.:.:.	1/2:79:0,40,39:0:0:40,39:1428,1404:-231.231,-114.919,-102.878,-116.67,0,-104.93	1/2:27:0,12,15:0:0:12,15:423,540:-78.8581,-44.4211,-40.8087,-34.7927,0,-30.2773	1/2:96:0,48,48:0:0:48,48:1712,1711:-279.385,-139.826,-125.376,-139.916,0,-125.467	1/2:68:0,34,34:0:0:34,34:1209,1224:-198.753,-100.232,-89.997,-98.8787,0,-88.6437	1/1:55:0,55,0:0:0:55,0:1976,0:-178.113,-16.5567,0,-178.113,-16.5567,-178.113	1/2:71:0,44,27:0:0:44,27:1552,972:-206.036,-79.6701,-66.4248,-126.723,0,-118.595	1/1:98:0,98,0:0:0:98,0:3463,0:-311.862,-29.5009,0,-311.862,-29.5009,-311.862	1/1:112:0,112,0:0:0:112,0:3990,0:-359.243,-33.7154,0,-359.243,-33.7154,-359.243	1/1:62:0,61,0:0:0:61,0:2187,0:-196.735,-18.3628,0,-196.735,-18.3628,-196.735	1/2:78:0,35,43:0:0:35,43:1228,1544:-226.239,-126.309,-115.773,-100.285,0,-87.3403	1/1:85:0,85,0:0:0:85,0:3026,0:-272.556,-25.5876,0,-272.556,-25.5876,-272.556	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:48:0,16,32:0:0:16,32:572,1152:-140.995,-94.3572,-89.5407,-46.996,0,-37.3631	1/1:12:0,12,0:0:0:12,0:428,0:-38.8579,-3.61236,0,-38.8579,-3.61236,-38.8579	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/2:91:0,34,57:0:0:34,57:1214,2048:-266.401,-167.433,-157.198,-99.3257,0,-82.167	1/1:34:0,34,0:0:0:34,0:1220,0:-110.106,-10.235,0,-110.106,-10.235,-110.106	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:14:0,7,7:0:0:7,7:248,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chr03	1827373	.	TCTTGT	CCTTGT,CCTTT	157997	PASS	AB=0.463959,0.530918;ABP=33.8455,25.7031;AC=154,32;AF=0.827957,0.172043;AN=186;AO=5235,1456;CIGAR=1X5M,1X3M1D1M;DP=6726;DPB=7311.67;DPRA=0,1.37815;EPP=7295.69,3078.41;EPPR=3.73412;GTI=5;LEN=1,5;MEANALT=1.70968,2.33333;MQM=59.9694,59.8379;MQMR=60;NS=93;NUMALT=2;ODDS=1.17589;PAIRED=0,0;PAIREDR=0;PAO=2483,2483;PQA=84961,84961;PQR=0;PRO=0;QA=186271,51531;QR=108;RO=3;RPL=5181,1446;RPP=10906.5,3078.41;RPPR=9.52472;RPR=54,10;RUN=1,1;SAF=467,0;SAP=7676.21,3164.67;SAR=4768,1456;SRF=2;SRP=3.73412;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:37:0,11,26:0:0:11,26:392,918:-103.33,-71.4204,-68.1091,-28.8214,0,-20.9946	1/2:86:0,30,56:0:0:30,56:1064,1958:-244.006,-157.333,-148.302,-84.7766,0,-67.9189	1/2:122:0,62,58:0:0:62,58:2213,2054:-343.537,-163.196,-144.532,-176.288,0,-158.829	1/1:146:1,144,0:1:36:144,0:5146,0:-456.16,-43.9841,0,-456.461,-43.3483,-459.398	1/1:52:0,52,0:0:0:52,0:1853,0:-164.104,-15.6536,0,-164.104,-15.6536,-164.104	1/1:47:0,47,0:0:0:47,0:1680,0:-149.959,-14.1484,0,-149.959,-14.1484,-149.959	1/1:105:0,105,0:0:0:105,0:3764,0:-336.396,-31.6082,0,-336.396,-31.6082,-336.396	1/2:106:0,38,68:0:0:38,68:1319,2372:-293.821,-186.64,-175.201,-101.016,0,-80.5464	1/1:74:0,74,0:0:0:74,0:2633,0:-235.026,-22.2762,0,-235.026,-22.2762,-235.026	1/1:83:0,83,0:0:0:83,0:2944,0:-262.343,-24.9855,0,-262.343,-24.9855,-262.343	1/1:30:0,30,0:0:0:30,0:1044,0:-89.9073,-9.0309,0,-89.9073,-9.0309,-89.9073	1/1:69:0,69,0:0:0:69,0:2433,0:-213.714,-20.7711,0,-213.714,-20.7711,-213.714	1/1:66:0,66,0:0:0:66,0:2340,0:-206.472,-19.868,0,-206.472,-19.868,-206.472	1/1:52:0,52,0:0:0:52,0:1859,0:-163.287,-15.6536,0,-163.287,-15.6536,-163.287	1/1:63:0,63,0:0:0:63,0:2252,0:-198.976,-18.9649,0,-198.976,-18.9649,-198.976	1/1:58:0,58,0:0:0:58,0:2071,0:-181.641,-17.4597,0,-181.641,-17.4597,-181.641	1/1:75:0,75,0:0:0:75,0:2635,0:-234.873,-22.5773,0,-234.873,-22.5773,-234.873	1/1:86:0,86,0:0:0:86,0:3073,0:-274.064,-25.8886,0,-274.064,-25.8886,-274.064	1/1:30:0,30,0:0:0:30,0:1072,0:-94.876,-9.0309,0,-94.876,-9.0309,-94.876	1/1:42:0,42,0:0:0:42,0:1508,0:-129.44,-12.6433,0,-129.44,-12.6433,-129.44	1/1:104:0,104,0:0:0:104,0:3718,0:-328.88,-31.3071,0,-328.88,-31.3071,-328.88	1/2:51:0,23,28:0:0:23,28:802,982:-145.426,-80.2027,-73.279,-65.5194,0,-57.0905	1/1:32:0,32,0:0:0:32,0:1148,0:-102.292,-9.63296,0,-102.292,-9.63296,-102.292	1/1:72:0,71,0:0:0:71,0:2529,0:-225.452,-21.3731,0,-225.452,-21.3731,-225.452	1/2:59:0,29,29:0:0:29,29:1032,1028:-164.237,-80.1883,-71.4585,-80.5588,0,-71.8289	1/2:223:0,130,91:0:0:130,91:4609,3247:-640.147,-264.674,-225.54,-375.444,0,-348.05	1/1:140:0,137,0:0:0:137,0:4904,0:-438.722,-41.2411,0,-438.722,-41.2411,-438.722	1/1:43:0,43,0:0:0:43,0:1544,0:-137.313,-12.9443,0,-137.313,-12.9443,-137.313	1/2:149:0,88,61:0:0:88,61:3123,2186:-432.974,-178.525,-152.034,-254.688,0,-236.325	1/2:39:0,34,5:0:0:34,5:1224,180:-111.233,-12.0204,-1.78542,-96.5602,0,-95.055	1/1:72:0,71,0:0:0:71,0:2517,0:-223.978,-21.3731,0,-223.978,-21.3731,-223.978	.:.:.:.:.:.:.:.	1/1:7:0,7,0:0:0:7,0:252,0:-22.152,-2.10721,0,-22.152,-2.10721,-22.152	1/1:2:0,2,0:0:0:2,0:72,0:-6.80663,-0.60206,0,-6.80663,-0.60206,-6.80663	1/1:4:0,4,0:0:0:4,0:140,0:-12.5409,-1.20412,0,-12.5409,-1.20412,-12.5409	1/1:4:0,4,0:0:0:4,0:144,0:-12.9551,-1.20412,0,-12.9551,-1.20412,-12.9551	1/1:339:0,336,0:0:0:336,0:11961,0:-1075.9,-101.146,0,-1075.9,-101.146,-1075.9	1/1:50:0,48,0:0:0:48,0:1712,0:-152.796,-14.4494,0,-152.796,-14.4494,-152.796	1/2:50:0,20,28:0:0:20,28:720,989:-137.352,-78.6547,-72.6341,-56.918,0,-48.4892	1/1:4:0,4,0:0:0:4,0:144,0:-13.2233,-1.20412,0,-13.2233,-1.20412,-13.2233	1/2:113:0,54,59:0:0:54,59:1940,2081:-325.214,-166.973,-150.717,-155.8,0,-138.039	1/2:40:0,15,25:0:0:15,25:536,861:-112.579,-68.8932,-64.3778,-42.7144,0,-35.1887	1/2:94:0,41,53:0:0:41,53:1461,1889:-266.852,-147.821,-135.478,-112.984,0,-97.0296	1/2:81:0,34,47:0:0:34,47:1191,1683:-232.519,-135.633,-125.398,-95.3875,0,-81.2391	1/1:78:0,78,0:0:0:78,0:2768,0:-245.803,-23.4803,0,-245.803,-23.4803,-245.803	1/2:128:1,68,59:1:36:68,59:2386,2094:-361.409,-167.538,-150.006,-191.113,0,-176.29	1/1:77:0,77,0:0:0:77,0:2754,0:-242.127,-23.1793,0,-242.127,-23.1793,-242.127	1/1:77:0,76,0:0:0:76,0:2704,0:-238.019,-22.8783,0,-238.019,-22.8783,-238.019	1/1:83:0,82,0:0:0:82,0:2925,0:-260.266,-24.6845,0,-260.266,-24.6845,-260.266	1/2:89:0,37,52:0:0:37,52:1324,1840:-253.796,-145.864,-134.726,-103.998,0,-88.3444	1/1:131:0,131,0:0:0:131,0:4656,0:-419.136,-39.4349,0,-419.136,-39.4349,-419.136	1/1:3:0,3,0:0:0:3,0:108,0:-9.67846,-0.90309,0,-9.67846,-0.90309,-9.67846	1/2:102:0,37,64:0:0:37,64:1324,2270:-288.021,-180.081,-168.943,-103.163,0,-83.8968	1/1:65:0,65,0:0:0:65,0:2294,0:-206.717,-19.567,0,-206.717,-19.567,-206.717	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:86:0,29,57:0:0:29,57:1021,2022:-238.163,-155.106,-146.376,-73.6656,0,-56.5069	1/1:29:0,29,0:0:0:29,0:1036,0:-92.9181,-8.72987,0,-92.9181,-8.72987,-92.9181	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:17:0,6,11:0:0:6,11:212,385:-48.9395,-31.6729,-29.8667,-17.6186,0,-14.3073	1/1:43:0,43,0:0:0:43,0:1529,0:-134.551,-12.9443,0,-134.551,-12.9443,-134.551	1/1:70:0,70,0:0:0:70,0:2503,0:-219.36,-21.0721,0,-219.36,-21.0721,-219.36	1/1:3:0,3,0:0:0:3,0:108,0:-9.75421,-0.90309,0,-9.75421,-0.90309,-9.75421	1/2:148:0,94,54:0:0:94,54:3349,1904:-428.285,-155.322,-127.025,-273.258,0,-257.002	1/1:97:0,95,2:0:0:95,2:3380,72:-302.112,-28.5979,0,-296.238,-24.349,-295.636	1/2:65:0,24,40:0:0:24,40:853,1403:-179.891,-110.414,-103.189,-65.8148,0,-53.7736	1/1:21:0,21,0:0:0:21,0:743,0:-64.9615,-6.32163,0,-64.9615,-6.32163,-64.9615	1/1:102:0,101,0:0:0:101,0:3596,0:-318.007,-30.404,0,-318.007,-30.404,-318.007	1/2:56:0,11,44:0:0:11,44:392,1548:-156.823,-124.875,-121.564,-30.9039,0,-17.6585	1/1:20:0,20,0:0:0:20,0:711,0:-61.2327,-6.0206,0,-61.2327,-6.0206,-61.2327	1/1:71:0,71,0:0:0:71,0:2547,0:-226.635,-21.3731,0,-226.635,-21.3731,-226.635	1/2:141:0,75,66:0:0:75,66:2662,2345:-408.316,-191.427,-168.85,-217.244,0,-197.376	1/1:8:0,8,0:0:0:8,0:288,0:-25.4806,-2.40824,0,-25.4806,-2.40824,-25.4806	1/1:36:0,34,0:0:0:34,0:1197,0:-105.422,-10.235,0,-105.422,-10.235,-105.422	1/1:56:0,56,0:0:0:56,0:1973,0:-175.308,-16.8577,0,-175.308,-16.8577,-175.308	1/1:79:0,78,0:0:0:78,0:2780,0:-245.299,-23.4803,0,-245.299,-23.4803,-245.299	1/1:94:0,94,0:0:0:94,0:3349,0:-295.732,-28.2968,0,-295.732,-28.2968,-295.732	1/2:76:1,26,48:1:36:26,48:936,1709:-209.721,-133.687,-128.795,-70.8733,0,-59.354	1/1:97:0,96,1:0:0:96,1:3411,36:-302.376,-28.8989,0,-299.439,-25.6016,-299.138	1/2:12:0,3,9:0:0:3,9:108,318:-34.8325,-26.0253,-25.1222,-9.01163,0,-6.30236	1/1:99:0,98,1:0:0:98,1:3485,36:-309.278,-29.5009,0,-306.341,-26.2037,-306.04	1/1:87:0,87,0:0:0:87,0:3116,0:-275.741,-26.1896,0,-275.741,-26.1896,-275.741	1/1:171:0,169,0:0:0:169,0:6006,0:-537.468,-50.8741,0,-537.468,-50.8741,-537.468	1/2:96:0,51,45:0:0:51,45:1827,1597:-278.165,-129.179,-113.826,-148.06,0,-134.514	1/2:70:0,32,38:0:0:32,38:1148,1365:-202.919,-109.313,-99.6797,-91.6075,0,-80.1683	1/2:113:0,49,63:0:0:49,63:1760,2214:-322.455,-178.885,-164.135,-142.502,0,-123.537	1/2:142:0,65,77:0:0:65,77:2289,2720:-403.667,-217.346,-197.779,-182.201,0,-159.022	1/1:39:0,39,0:0:0:39,0:1373,0:-122.871,-11.7402,0,-122.871,-11.7402,-122.871	1/1:72:0,71,0:0:0:71,0:2509,0:-223.18,-21.3731,0,-223.18,-21.3731,-223.18	1/1:58:0,58,0:0:0:58,0:2031,0:-178.512,-17.4597,0,-178.512,-17.4597,-178.512	1/2:25:0,6,19:0:0:6,19:216,680:-69.6871,-52.1114,-50.3052,-14.7312,0,-9.01159	1/2:58:0,32,26:0:0:32,26:1143,903:-158.083,-65.0805,-55.4476,-84.8152,0,-76.9884	1/2:59:0,14,45:0:0:14,45:500,1606:-170.687,-129.929,-125.715,-39.8365,0,-26.2901	1/1:51:0,51,0:0:0:51,0:1813,0:-158.572,-15.3525,0,-158.572,-15.3525,-158.572	1/1:104:0,103,1:0:0:103,1:3654,36:-321.615,-31.0061,0,-318.679,-27.7088,-318.378
chr03	1946112	.	C	T	44294.7	PASS	AB=0.51251;ABP=8.17162;AC=35;AF=0.18617;AN=188;AO=1965;CIGAR=1X;DP=9945;DPB=9945;DPRA=1.21492;EPP=12.5681;EPPR=22.7082;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.8198;MQMR=59.9728;NS=94;NUMALT=1;ODDS=0.350979;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69354;QR=281429;RO=7977;RPL=1952;RPP=4157.78;RPPR=16747.8;RPR=13;RUN=1;SAF=923;SAP=18.6593;SAR=1042;SRF=3787;SRP=47.2207;SRR=4190;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:16,24:16:572:24:847:-64.5075,0,-39.7722	0/1:114:44,70:44:1560:70:2426:-184.271,0,-106.374	0/1:117:58,59:58:2006:59:2083:-152.516,0,-145.59	0/0:144:144,0:144:5100:0:0:0,-43.3483,-459.147	0/0:64:64,0:64:2259:0:0:0,-19.2659,-203.255	0/0:52:52,0:52:1814:0:0:0,-15.6536,-163.537	0/0:119:119,0:119:4215:0:0:0,-35.8226,-379.532	0/1:118:41,77:41:1460:77:2663:-204.389,0,-96.1745	0/0:147:146,1:146:5129:1:36:0,-40.6531,-458.158	0/0:97:97,0:97:3426:0:0:0,-29.1999,-308.556	0/0:153:153,0:153:5348:0:0:0,-46.0576,-481.452	0/1:163:90,73:90:3155:73:2586:-183.92,0,-235.106	0/0:132:132,0:132:4650:0:0:0,-39.736,-418.66	0/0:174:174,0:174:6153:0:0:0,-52.3792,-553.79	0/0:128:128,0:128:4521:0:0:0,-38.5318,-407.063	0/0:126:126,0:126:4461:0:0:0,-37.9298,-401.663	0/0:147:147,0:147:5199:0:0:0,-44.2514,-468.051	0/0:125:125,0:125:4415:0:0:0,-37.6287,-397.523	0/0:96:96,0:96:3366:0:0:0,-28.8989,-303.158	0/0:109:109,0:109:3870:0:0:0,-32.8123,-348.497	0/0:121:121,0:121:4289:0:0:0,-36.4246,-386.19	0/1:37:13,24:13:453:24:852:-65.8623,0,-29.9615	0/0:104:104,0:104:3704:0:0:0,-31.3071,-333.564	0/0:134:133,1:133:4702:1:36:0,-36.7397,-419.744	0/1:73:27,46:27:968:46:1635:-125.463,0,-65.4622	0/1:222:99,123:99:3471:123:4341:-323.949,0,-245.774	0/0:208:207,0:207:7288:0:0:0,-62.3132,-655.624	0/0:86:86,0:86:3029:0:0:0,-25.8886,-272.842	0/1:136:82,54:82:2910:54:1924:-132.497,0,-221.196	0/0:105:103,2:103:3664:2:72:0,-24.7714,-323.129	0/0:149:149,0:149:5225:0:0:0,-44.8535,-470.389	0/1:4:2,2:2:72:2:72:-5.62776,0,-5.6326	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:8:3,5:3:104:5:172:-13.4088,0,-7.29457	0/0:364:364,0:364:12803:0:0:0,-109.575,-1152.11	0/0:62:61,1:61:2175:1:36:0,-15.0656,-192.418	0/1:138:70,67:70:2472:67:2365:-171.501,0,-181.132	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:67:37,30:37:1297:30:1060:-75.5423,0,-96.8599	0/1:84:44,40:44:1549:40:1419:-102.709,0,-114.413	0/1:134:60,74:60:2122:74:2587:-192.734,0,-150.91	0/1:156:77,79:77:2730:79:2792:-204.551,0,-198.982	0/0:141:141,0:141:5007:0:0:0,-42.4452,-450.781	0/1:86:39,47:39:1360:47:1639:-121.897,0,-96.807	0/0:59:59,0:59:2071:0:0:0,-17.7608,-186.661	0/0:158:156,2:156:5498:2:72:0,-40.726,-488.116	0/0:93:93,0:93:3291:0:0:0,-27.9958,-296.326	0/1:115:48,67:48:1712:67:2370:-178.937,0,-119.747	0/0:110:110,0:110:3881:0:0:0,-33.1133,-349.488	0/0:3:3,0:3:95:0:0:0,-0.90309,-8.86421	0/1:138:53,85:53:1852:85:2967:-225.713,0,-125.415	0/0:35:35,0:35:1216:0:0:0,-10.536,-109.74	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.7618	0/1:73:41,32:41:1455:32:1109:-78.1394,0,-109.27	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.037	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:11:7,4:7:244:4:140:-9.63325,0,-18.9881	0/0:85:84,1:84:2971:1:36:0,-21.9893,-264.024	0/0:251:250,1:250:8890:1:36:0,-71.9603,-796.493	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:88:52,36:52:1848:36:1263:-87.4811,0,-140.109	0/0:91:90,1:90:3190:1:36:0,-23.7955,-283.726	0/1:69:33,36:33:1151:36:1259:-92.6999,0,-83.1215	0/0:45:45,0:45:1583:0:0:0,-13.5463,-142.76	0/0:97:94,3:94:3331:3:108:0,-19.1247,-289.845	0/1:116:40,75:40:1420:75:2649:-203.678,0,-93.1193	0/0:69:69,0:69:2406:0:0:0,-20.7711,-216.795	0/0:78:78,0:78:2760:0:0:0,-23.4803,-248.641	0/1:186:97,89:97:3430:89:3176:-230.067,0,-252.919	0/0:16:16,0:16:548:0:0:0,-4.81648,-49.6413	0/0:72:72,0:72:2537:0:0:0,-21.6742,-228.581	0/0:91:91,0:91:3204:0:0:0,-27.3937,-288.584	0/0:209:208,1:208:7342:1:32:0,-59.716,-657.63	0/0:84:84,0:84:3000:0:0:0,-25.2865,-270.232	0/1:152:78,74:78:2737:74:2627:-190.876,0,-200.817	0/0:107:104,3:104:3647:3:104:0,-22.5074,-318.732	0/1:14:9,5:9:312:5:176:-11.9706,0,-24.2009	0/0:87:87,0:87:3084:0:0:0,-26.1896,-277.79	0/0:74:74,0:74:2584:0:0:0,-22.2762,-232.807	0/0:210:210,0:210:7355:0:0:0,-63.2163,-662.013	0/1:187:96,91:96:3366:91:3252:-236.233,0,-246.865	0/1:102:51,51:51:1805:51:1816:-133.016,0,-132.022	0/1:192:111,81:111:3924:81:2854:-199.279,0,-295.557	0/1:261:148,113:148:5246:113:3993:-280.991,0,-393.711	0/0:75:75,0:75:2643:0:0:0,-22.5772,-238.115	0/0:152:152,0:152:5379:0:0:0,-45.7566,-484.246	0/0:115:115,0:115:4023:0:0:0,-34.6184,-362.262	0/1:116:65,51:65:2285:51:1819:-129.062,0,-170.992	0/1:157:79,78:79:2749:78:2753:-200.741,0,-199.895	0/1:118:38,80:38:1355:80:2848:-221.021,0,-86.7175	0/0:60:60,0:60:2112:0:0:0,-18.0618,-190.347	0/0:212:210,2:210:7413:2:72:0,-56.9816,-660.389
chr03	1947689	.	A	G	544059	PASS	AB=0.347162;ABP=2952.13;AC=153;AF=0.81383;AN=188;AO=20604;CIGAR=1X;DP=30167;DPB=30167;DPRA=0;EPP=44744;EPPR=20744.9;GTI=11;LEN=1;MEANALT=1.06383;MQM=59.7626;MQMR=59.9615;NS=94;NUMALT=1;ODDS=6.31611;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=728437;QR=340808;RO=9556;RPL=10594;RPP=38.9545;RPPR=3416.87;RPR=10010;RUN=1;SAF=10594;SAP=38.9545;SAR=10010;SRF=2841;SRP=3413.35;SRR=6715;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:188:122,66:122:4324:66:2324:-152.809,0,-332.742	0/1:363:213,150:213:7595:150:5332:-370.736,0,-574.307	0/1:1002:761,241:761:27091:241:8472:-460.835,0,-2135.71	1/1:492:1,491:1:36:491:17326:-1555.36,-144.508,0	1/1:155:0,155:0:0:155:5487:-493.949,-46.6597,0	1/1:113:1,111:1:36:111:3947:-351.497,-30.4769,0	1/1:216:0,216:0:0:216:7666:-689.962,-65.0225,0	0/1:595:407,188:407:14533:188:6628:-417.451,0,-1128.38	1/1:309:0,308:0:0:308:10772:-968.998,-92.7172,0	1/1:230:1,229:1:36:229:8143:-729.219,-65.6386,0	1/1:180:0,180:0:0:180:6343:-570.94,-54.1854,0	0/1:339:202,137:202:7204:137:4784:-328.629,0,-546.332	1/1:273:0,273:0:0:273:9624:-866.082,-82.1812,0	1/1:200:0,200:0:0:200:7048:-634.366,-60.206,0	1/1:217:1,216:1:21:216:7686:-689.601,-63.2236,0	1/1:172:1,171:1:36:171:6028:-538.876,-48.1789,0	1/1:176:1,175:1:36:175:6204:-554.765,-49.383,0	1/1:150:2,148:2:72:148:5195:-460.7,-38.3178,0	1/1:114:1,113:1:36:113:4001:-356.638,-30.7191,0	1/1:463:1,462:1:36:462:16351:-1467.64,-135.779,0	1/1:403:1,400:1:36:400:14140:-1268.01,-117.475,0	0/1:310:244,66:244:8719:66:2345:-117.985,0,-691.366	1/1:492:0,492:0:0:492:17407:-1566.18,-148.107,0	1/1:223:1,222:1:36:222:7888:-706.347,-63.5314,0	0/1:259:148,111:148:5274:111:3877:-271.079,0,-396.828	0/1:917:594,323:594:21190:323:11442:-753.545,0,-1630.49	1/1:749:1,748:1:36:748:26471:-2377.82,-221.873,0	1/1:136:0,136:0:0:136:4825:-434.394,-40.9401,0	0/1:1009:620,389:620:22086:389:13834:-940.92,0,-1683.44	1/1:304:10,294:10:351:294:10389:-902.807,-59.5864,0	1/1:335:0,335:0:0:335:11851:-1066.23,-100.845,0	0/1:24:16,8:16:568:8:273:-17.6755,0,-44.2271	1/1:63:1,62:1:36:62:2175:-192.411,-15.3666,0	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	1/1:38:0,38:0:0:38:1343:-121.169,-11.4391,0	0/1:87:47,40:47:1667:40:1393:-99.4743,0,-124.127	1/1:588:0,588:0:0:588:20758:-1867.63,-177.006,0	1/1:369:5,364:5:171:364:12922:-1147.01,-95.3546,0	0/1:202:104,98:104:3719:98:3422:-247.382,0,-274.093	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	0/1:657:403,254:403:14351:254:9037:-615.502,0,-1093.57	0/1:107:58,49:58:2059:49:1708:-121.785,0,-153.362	0/1:611:398,213:398:14253:213:7539:-494.612,0,-1098.59	0/1:266:145,121:145:5165:121:4264:-303.86,0,-384.881	1/1:221:1,220:1:36:220:7706:-689.925,-62.9294,0	0/1:332:214,118:214:7590:118:4224:-280.356,0,-583.18	1/1:417:1,416:1:36:416:14722:-1318.81,-121.931,0	1/1:593:3,590:3:108:590:20790:-1859.56,-168.436,0	1/1:271:3,268:3:108:268:9462:-841.456,-71.504,0	0/1:598:375,223:375:13409:223:7832:-524.854,0,-1026.57	1/1:341:0,341:0:0:341:12072:-1086.14,-102.651,0	1/1:20:0,20:0:0:20:703:-63.5888,-6.0206,0	0/1:610:393,217:393:13985:217:7736:-512.6,0,-1074.61	1/1:157:2,155:2:72:155:5475:-486.03,-40.425,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:631:375,256:375:13350:256:9045:-624.036,0,-1011.23	1/1:115:1,114:1:36:114:4075:-363.331,-31.0202,0	0/1:38:27,11:27:960:11:387:-23.7268,0,-75.2771	0/1:45:28,17:28:1008:17:604:-41.1314,0,-77.49	1/1:278:1,277:1:36:277:9808:-878.906,-80.0881,0	1/1:238:3,235:3:108:235:8305:-737.358,-61.57,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:616:402,214:402:14399:214:7539:-492.676,0,-1110.22	1/1:510:9,501:9:324:501:17699:-1562.77,-124.019,0	0/1:243:132,111:132:4739:111:3943:-281.911,0,-353.516	1/1:253:1,251:1:36:251:8910:-798.357,-72.5412,0	1/1:405:0,405:0:0:405:14299:-1286.06,-121.917,0	0/1:1504:1302,202:1302:46400:202:7116:-187.752,0,-3721.67	1/1:109:0,109:0:0:109:3843:-346.006,-32.8123,0	1/1:224:1,223:1:36:223:7913:-708.547,-63.8324,0	0/1:269:152,117:152:5420:117:4130:-290.866,0,-406.953	1/1:52:1,51:1:36:51:1803:-158.865,-12.0553,0	1/1:268:0,268:0:0:268:9388:-844.782,-80.676,0	1/1:258:1,257:1:36:257:9121:-817.206,-74.0675,0	1/1:479:0,478:0:0:478:16899:-1519.18,-143.892,0	1/1:418:1,417:1:36:417:14788:-1326.96,-122.232,0	0/1:626:380,246:380:13623:246:8685:-593.183,0,-1037.4	1/1:243:3,240:3:99:240:8485:-754.345,-63.9137,0	0/1:48:19,29:19:662:29:1012:-76.9391,0,-45.453	1/1:350:2,348:2:68:348:12329:-1102.93,-98.9028,0	1/1:328:2,326:2:72:326:11572:-1034.42,-91.9011,0	1/1:633:0,633:0:0:633:22444:-2018.62,-190.552,0	0/1:298:178,120:178:6368:120:4247:-292.69,0,-483.504	0/1:252:144,108:144:5110:108:3810:-267.233,0,-384.185	0/1:290:146,144:146:5196:144:5093:-371.2,0,-380.482	0/1:483:271,212:271:9659:212:7492:-528.907,0,-723.859	1/1:96:0,96:0:0:96:3400:-306.181,-28.8989,0	1/1:218:1,217:1:36:217:7610:-681.296,-62.0263,0	1/1:233:0,233:0:0:233:8230:-740.671,-70.14,0	0/1:126:91,35:91:3272:35:1260:-75.7757,0,-256.769	0/1:315:182,133:182:6489:133:4688:-327.253,0,-489.264	0/1:275:196,79:196:7005:79:2816:-170.896,0,-547.729	1/1:291:0,291:0:0:291:10261:-923.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chr03	1947737	.	A	G	123224	PASS	AB=0.729918;ABP=4215.78;AC=35;AF=0.18617;AN=188;AO=6727;CIGAR=1X;DP=16822;DPB=16822;DPRA=1.84241;EPP=14610.5;EPPR=21921.9;GTI=20;LEN=1;MEANALT=1.02083;MQM=59.9732;MQMR=59.9357;NS=94;NUMALT=1;ODDS=0.848199;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240611;QR=361107;RO=10094;RPL=6727;RPP=14610.5;RPPR=21921.9;RPR=0;RUN=1;SAF=0;SAP=14610.5;SAR=6727;SRF=0;SRP=21921.9;SRR=10094;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:155:51,104:51:1815:104:3728:-289.061,0,-116.971	0/1:143:30,113:30:1080:113:4028:-319.663,0,-54.466	0/1:849:182,667:182:6508:667:23808:-1886.5,0,-330.231	0/0:303:303,0:303:10808:0:0:0,-91.2121,-972.621	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:40:40,0:40:1419:0:0:0,-12.0412,-127.734	0/0:102:102,0:102:3629:0:0:0,-30.7051,-326.815	0/1:334:62,272:62:2179:272:9738:-775.815,0,-95.8274	0/0:169:169,0:169:6026:0:0:0,-50.8741,-542.435	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.297	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.141	0/1:210:70,140:70:2516:140:5028:-389.448,0,-163.467	0/0:128:128,0:128:4586:0:0:0,-38.5318,-412.895	0/0:84:84,0:84:3000:0:0:0,-25.2865,-270.232	0/0:111:111,0:111:3975:0:0:0,-33.4143,-357.937	0/0:90:90,0:90:3205:0:0:0,-27.0927,-288.672	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:44:43,1:43:1536:1:36:0,-9.64704,-134.935	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:212:212,0:212:7566:0:0:0,-63.8184,-680.977	0/0:198:197,1:197:7018:1:36:0,-56.0057,-627.888	0/1:224:35,189:35:1260:189:6756:-540.684,0,-46.2748	0/0:394:394,0:394:14060:0:0:0,-118.606,-1265.13	0/0:80:80,0:80:2868:0:0:0,-24.0824,-257.867	0/1:165:61,104:61:2181:104:3702:-283.714,0,-146.884	0/1:504:134,370:134:4801:370:13211:-1037.07,0,-280.522	0/0:429:429,0:429:15353:0:0:0,-129.142,-1380.86	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:641:189,451:189:6773:451:16120:-1257.39,0,-416.621	0/0:115:111,4:111:3984:4:144:0,-21.3048,-345.431	0/0:123:123,0:123:4385:0:0:0,-37.0267,-394.823	0/1:19:6,13:6:216:13:460:-36.0158,0,-14.0709	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/1:77:35,42:35:1260:42:1503:-112.385,0,-90.5262	0/0:291:291,0:291:10431:0:0:0,-87.5997,-938.668	0/0:130:125,5:125:4480:5:180:0,-22.5818,-386.817	0/1:94:46,48:46:1643:48:1711:-125.978,0,-119.861	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:360:105,255:105:3752:255:9120:-712.405,0,-229.51	0/1:58:22,36:22:792:36:1286:-98.5757,0,-54.1459	0/1:417:110,307:110:3944:307:11003:-864.625,0,-229.622	0/1:150:63,87:63:2248:87:3124:-236.231,0,-157.429	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.664	0/1:213:61,152:61:2192:152:5456:-427.045,0,-133.408	0/0:211:210,1:210:7529:1:36:0,-59.9191,-673.846	0/0:244:243,1:243:8701:1:36:0,-69.853,-779.107	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.319	0/1:321:92,229:92:3304:229:8194:-640.83,0,-200.947	0/0:163:163,0:163:5844:0:0:0,-49.0679,-525.58	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:371:114,257:114:4058:257:9193:-715.468,0,-253.723	0/0:97:95,2:95:3400:2:68:0,-22.7422,-299.65	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:429:143,286:143:5120:286:10236:-791.863,0,-331.801	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:32:7,25:7:252:25:900:-71.6881,0,-13.396	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/0:127:127,0:127:4490:0:0:0,-38.2308,-404.199	0/0:103:101,2:101:3612:2:72:0,-24.1694,-318.45	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:316:89,227:89:3177:227:8129:-636.443,0,-191.027	0/0:268:261,7:261:9360:7:252:0,-57.6471,-819.33	0/1:112:45,67:45:1616:67:2377:-180.471,0,-112.015	0/0:121:121,0:121:4320:0:0:0,-36.4246,-388.972	0/0:231:231,0:231:8281:0:0:0,-69.5379,-744.297	0/1:1398:175,1223:175:6246:1223:43730:-3513.38,0,-141.394	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.777	0/1:100:29,71:29:1044:71:2540:-198.748,0,-64.1718	0/0:30:29,1:29:1044:1:36:0,-5.43262,-90.5902	0/0:158:158,0:158:5660:0:0:0,-47.5627,-509.494	0/0:155:154,1:154:5520:1:36:0,-43.0614,-493.325	0/0:229:229,0:229:8174:0:0:0,-68.9359,-735.674	0/0:176:176,0:176:6293:0:0:0,-52.9813,-565.836	0/1:358:132,226:132:4740:226:8100:-621.247,0,-318.987	0/0:137:135,2:135:4825:2:72:0,-34.4044,-427.559	0/1:43:24,19:24:864:19:684:-48.946,0,-65.1383	0/0:145:145,0:145:5196:0:0:0,-43.6493,-467.779	0/0:159:157,2:157:5598:2:72:0,-41.027,-497.088	0/0:326:326,0:326:11688:0:0:0,-98.1358,-1051.69	0/1:132:38,94:38:1360:94:3359:-262.79,0,-82.9646	0/1:157:52,105:52:1868:105:3755:-290.888,0,-121.138	0/1:110:51,59:51:1824:59:2120:-157.955,0,-131.323	0/1:240:85,155:85:3047:155:5564:-428.632,0,-202.211	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.261	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/1:86:20,66:20:720:66:2376:-188.209,0,-39.2402	0/1:168:60,108:60:2143:108:3863:-297.292,0,-142.564	0/1:169:51,118:51:1832:118:4201:-327.397,0,-114.287	0/0:161:161,0:161:5747:0:0:0,-48.4658,-517.24	0/0:160:160,0:160:5731:0:0:0,-48.1648,-515.906
chr03	2030660	.	CA	TG,CG	102518	PASS	AB=0.464535,0.534884;ABP=21.8011,21.1901;AC=152,36;AF=0.808511,0.191489;AN=188;AO=3764,928;CIGAR=2X,1M1X;DP=4696;DPB=4696;DPRA=50.4839,1.00761;EPP=8098.45,1974.94;EPPR=5.18177;GTI=1;LEN=2,1;MEANALT=1.45161,2;MQM=59.9168,59.9698;MQMR=60;NS=94;NUMALT=2;ODDS=0.897842;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=133278,33179;QR=36;RO=1;RPL=3755,923;RPP=8098.45,1974.94;RPPR=5.18177;RPR=9,5;RUN=1,1;SAF=0,0;SAP=8176.43,2018.14;SAR=3764,928;SRF=1;SRP=5.18177;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:11:0,9,2:0:0:9,2:311,72:-31.4916,-6.23466,-3.52539,-25.6142,0,-25.0121	1/2:38:0,15,23:0:0:15,23:540,828:-111.982,-67.9204,-63.405,-44.4211,0,-37.4974	1/2:94:0,45,49:0:0:45,49:1599,1743:-272.685,-142.403,-128.857,-130.637,0,-115.887	1/1:136:0,136,0:0:0:136,0:4813,0:-433.326,-40.9401,0,-433.326,-40.9401,-433.326	1/1:8:0,8,0:0:0:8,0:286,0:-26.0855,-2.40824,0,-26.0855,-2.40824,-26.0855	1/1:9:0,8,0:0:0:8,0:275,0:-24.7252,-2.40824,0,-24.7252,-2.40824,-24.7252	1/1:60:0,60,0:0:0:60,0:2128,0:-191.788,-18.0618,0,-191.788,-18.0618,-191.788	1/2:21:0,12,9:0:0:12,9:419,320:-60.5114,-26.4331,-22.8207,-34.431,0,-31.7217	1/1:25:0,25,0:0:0:25,0:883,0:-79.7874,-7.52575,0,-79.7874,-7.52575,-79.7874	1/1:80:0,80,0:0:0:80,0:2849,0:-256.591,-24.0824,0,-256.591,-24.0824,-256.591	1/1:18:0,18,0:0:0:18,0:637,0:-57.6572,-5.41854,0,-57.6572,-5.41854,-57.6572	1/2:70:0,29,41:0:0:29,41:1042,1472:-205.432,-120.434,-111.704,-85.3566,0,-73.0144	1/1:69:0,69,0:0:0:69,0:2437,0:-219.584,-20.7711,0,-219.584,-20.7711,-219.584	1/1:45:0,45,0:0:0:45,0:1613,0:-145.46,-13.5464,0,-145.46,-13.5464,-145.46	1/1:52:0,52,0:0:0:52,0:1850,0:-166.779,-15.6536,0,-166.779,-15.6536,-166.779	1/1:37:0,37,0:0:0:37,0:1330,0:-120.002,-11.1381,0,-120.002,-11.1381,-120.002	1/1:46:0,46,0:0:0:46,0:1645,0:-148.339,-13.8474,0,-148.339,-13.8474,-148.339	1/1:34:0,34,0:0:0:34,0:1179,0:-106.408,-10.235,0,-106.408,-10.235,-106.408	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:99:0,99,0:0:0:99,0:3517,0:-316.739,-29.802,0,-316.739,-29.802,-316.739	1/1:113:0,113,0:0:0:113,0:4007,0:-360.708,-34.0164,0,-360.708,-34.0164,-360.708	1/2:33:0,11,22:0:0:11,22:383,788:-95.7601,-64.6221,-61.3108,-31.4893,0,-24.8666	1/1:44:0,44,0:0:0:44,0:1572,0:-141.771,-13.2453,0,-141.771,-13.2453,-141.771	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:16:0,12,4:0:0:12,4:430,144:-47.1778,-12.1095,-8.49714,-35.4277,0,-34.2236	1/2:115:0,56,59:0:0:56,59:1984,2107:-333.757,-172.138,-155.28,-161.975,0,-144.214	1/1:65:0,65,0:0:0:65,0:2279,0:-205.37,-19.567,0,-205.37,-19.567,-205.37	1/1:24:0,24,0:0:0:24,0:857,0:-77.4467,-7.22472,0,-77.4467,-7.22472,-77.4467	1/2:145:0,67,78:0:0:67,78:2397,2800:-424.217,-228.759,-208.59,-195.816,0,-172.336	1/1:75:0,73,2:0:0:73,2:2570,72:-231.188,-21.9752,0,-225.313,-15.7405,-224.711	1/1:58:0,58,0:0:0:58,0:2058,0:-185.491,-17.4597,0,-185.491,-17.4597,-185.491	1/2:5:0,3,2:0:0:3,2:108,68:-14.6799,-5.85565,-4.95256,-9.17208,0,-8.57002	1/1:5:0,5,0:0:0:5,0:180,0:-16.5474,-1.50515,0,-16.5474,-1.50515,-16.5474	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:13:1,11,0:1:36:11,0:387,0:-31.6146,-0.318992,0,-31.9156,-3.31133,-34.8543	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:129:0,129,0:0:0:129,0:4572,0:-411.641,-38.8329,0,-411.641,-38.8329,-411.641	1/1:34:0,34,0:0:0:34,0:1203,0:-108.575,-10.235,0,-108.575,-10.235,-108.575	1/2:29:0,11,18:0:0:11,18:362,636:-81.3819,-52.1495,-48.8382,-29.5705,0,-24.152	1/1:1:0,1,0:0:0:1,0:25,0:-2.49986,-0.30103,0,-2.49986,-0.30103,-2.49986	1/2:70:0,17,53:0:0:17,53:606,1891:-203.911,-154.513,-149.395,-49.7541,0,-33.7995	1/2:20:0,8,12:0:0:8,12:288,432:-59.1082,-35.6088,-33.2006,-23.8592,0,-20.2468	1/2:58:0,27,31:0:0:27,31:957,1099:-167.85,-89.8875,-81.7597,-78.3171,0,-68.9852	1/2:39:0,22,17:0:0:22,17:790,612:-114.739,-50.2959,-43.6733,-64.8027,0,-59.6852	1/1:63:0,63,0:0:0:63,0:2245,0:-202.313,-18.9649,0,-202.313,-18.9649,-202.313	1/2:24:0,13,11:0:0:13,11:457,392:-69.504,-32.3087,-28.3953,-37.5492,0,-34.2379	1/1:27:0,27,0:0:0:27,0:954,0:-86.1743,-8.12781,0,-86.1743,-8.12781,-86.1743	1/1:45:0,45,0:0:0:45,0:1594,0:-143.747,-13.5464,0,-143.747,-13.5464,-143.747	1/1:59:0,59,0:0:0:59,0:2110,0:-190.17,-17.7608,0,-190.17,-17.7608,-190.17	1/2:59:0,31,28:0:0:31,28:1101,1008:-172.317,-82.6075,-73.2756,-90.0675,0,-81.6387	1/1:50:0,50,0:0:0:50,0:1763,0:-158.95,-15.0515,0,-158.95,-15.0515,-158.95	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:40:0,22,18:0:0:22,18:777,644:-116.145,-52.8721,-46.2494,-63.6288,0,-58.2102	1/1:32:0,32,0:0:0:32,0:1137,0:-102.638,-9.63296,0,-102.638,-9.63296,-102.638	1/1:12:0,12,0:0:0:12,0:421,0:-38.2235,-3.61236,0,-38.2235,-3.61236,-38.2235	1/2:87:0,35,52:0:0:35,52:1218,1856:-250.699,-151.666,-141.13,-99.384,0,-83.7304	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/2:11:0,5,6:0:0:5,6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chr03	2030871	.	A	G	134179	PASS	AB=0.531374;ABP=28.8987;AC=150;AF=0.806452;AN=186;AO=6200;CIGAR=1X;DP=7628;DPB=7628;DPRA=82.9022;EPP=13275.7;EPPR=3058.42;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9911;MQMR=59.9516;NS=93;NUMALT=1;ODDS=3.04814;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220620;QR=50732;RO=1427;RPL=6178;RPP=13275.7;RPPR=3058.42;RPR=22;RUN=1;SAF=0;SAP=13466.1;SAR=6200;SRF=0;SRP=3101.7;SRR=1427;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:31,16:31:1108:16:564:-36.9419,0,-85.8826	0/1:96:41,55:41:1455:55:1956:-147.417,0,-102.346	0/1:74:29,45:29:1035:45:1608:-122.734,0,-71.1868	1/1:187:1,186:1:36:186:6631:-593.274,-52.6943,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:68:0,68:0:0:68:2413:-217.426,-20.47,0	1/1:139:0,139:0:0:139:4945:-445.157,-41.8432,0	0/1:199:92,107:92:3292:107:3804:-282.653,0,-236.277	1/1:70:1,69:1:36:69:2433:-215.627,-17.4738,0	1/1:70:0,70:0:0:70:2495:-224.803,-21.0721,0	1/1:78:0,78:0:0:78:2756:-248.281,-23.4803,0	0/1:50:20,30:20:708:30:1067:-81.2897,0,-48.9941	1/1:75:0,75:0:0:75:2675:-240.995,-22.5773,0	1/1:86:0,86:0:0:86:3062:-275.809,-25.8886,0	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	1/1:50:0,50:0:0:50:1766:-159.222,-15.0515,0	1/1:65:0,65:0:0:65:2307:-207.891,-19.567,0	1/1:59:0,59:0:0:59:2068:-186.389,-17.7608,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:134:0,134:0:0:134:4760:-428.56,-40.338,0	1/1:129:0,129:0:0:129:4615:-415.513,-38.8329,0	0/1:109:58,51:58:2076:51:1824:-131.629,0,-154.298	1/1:29:0,29:0:0:29:1019:-92.0213,-8.72987,0	1/1:40:0,40:0:0:40:1419:-128.007,-12.0412,0	0/1:59:28,31:28:1000:31:1112:-82.6306,0,-72.5546	0/1:267:118,149:118:4192:149:5286:-395.504,0,-297.087	1/1:203:0,202:0:0:202:7190:-646.801,-60.8081,0	1/1:42:0,42:0:0:42:1489:-134.303,-12.6433,0	0/1:275:123,152:123:4365:152:5383:-401.822,0,-310.243	1/1:112:1,111:1:36:111:3963:-353.263,-30.1171,0	1/1:121:0,121:0:0:121:4309:-387.988,-36.4246,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:158:0,158:0:0:158:5637:-507.451,-47.5627,0	1/1:240:0,240:0:0:240:8562:-770.58,-72.2472,0	0/1:56:24,32:24:852:32:1130:-85.1493,0,-60.1427	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:97:39,58:39:1379:58:2068:-157.191,0,-95.2081	0/1:42:24,18:24:852:18:635:-44.8337,0,-64.3571	0/1:95:38,57:38:1340:57:2036:-154.914,0,-92.3022	0/1:57:30,27:30:1064:27:960:-69.5576,0,-78.913	1/1:47:0,47:0:0:47:1678:-151.307,-14.1484,0	0/1:41:18,23:18:648:23:815:-61.3285,0,-46.3097	1/1:82:0,82:0:0:82:2917:-262.764,-24.6845,0	1/1:110:0,110:0:0:110:3931:-353.982,-33.1133,0	1/1:77:0,77:0:0:77:2743:-247.113,-23.1793,0	0/1:157:74,83:74:2603:83:2967:-220.001,0,-187.256	1/1:118:0,118:0:0:118:4197:-377.912,-35.5215,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:111:42,69:42:1508:69:2440:-186.44,0,-102.544	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:126:47,79:47:1667:79:2814:-215.569,0,-112.387	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:25:10,15:10:360:15:534:-40.8683,0,-25.2186	1/1:105:0,105:0:0:105:3711:-334.192,-31.6082,0	1/1:126:2,124:2:72:124:4428:-391.856,-31.0931,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:116:71,45:71:2502:45:1590:-108.469,0,-190.511	1/1:157:1,156:1:36:156:5544:-495.487,-43.6634,0	0/1:77:47,30:47:1654:30:1068:-73.2528,0,-125.967	1/1:99:0,99:0:0:99:3530:-317.861,-29.802,0	1/1:93:0,93:0:0:93:3310:-298.119,-27.9958,0	0/1:107:56,51:56:2007:51:1807:-130.7,0,-148.692	1/1:36:0,36:0:0:36:1271:-114.692,-10.8371,0	1/1:64:0,64:0:0:64:2249:-202.672,-19.2659,0	0/1:77:37,40:37:1310:40:1411:-104.107,0,-95.0208	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:111:0,111:0:0:111:3979:-358.299,-33.4143,0	1/1:55:0,55:0:0:55:1949:-175.684,-16.5567,0	1/1:71:0,71:0:0:71:2519:-226.962,-21.3731,0	1/1:104:0,104:0:0:104:3693:-332.574,-31.3071,0	0/1:99:40,59:40:1432:59:2112:-160.547,0,-99.3756	1/1:86:0,86:0:0:86:3054:-275.09,-25.8886,0	0/1:10:8,2:8:280:2:72:-3.82642,0,-22.529	1/1:74:0,74:0:0:74:2637:-237.576,-22.2762,0	1/1:81:0,81:0:0:81:2873:-258.806,-24.3834,0	1/1:127:0,127:0:0:127:4547:-409.396,-38.2308,0	0/1:90:39,51:39:1392:51:1811:-136.178,0,-97.9956	0/1:58:29,29:29:1032:29:1027:-75.2824,0,-75.7337	0/1:58:30,28:30:1072:28:995:-72.4043,0,-79.3327	0/1:109:50,59:50:1779:59:2082:-154.837,0,-127.58	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:64:0,64:0:0:64:2280:-205.462,-19.2659,0	1/1:69:0,69:0:0:69:2442:-220.033,-20.7711,0	0/1:75:38,37:38:1344:37:1320:-96.5247,0,-98.6829	0/1:110:50,60:50:1792:60:2135:-159.304,0,-128.449	0/1:43:30,13:30:1060:13:464:-29.1532,0,-82.767	1/1:88:0,88:0:0:88:3143:-283.095,-26.4906,0	1/1:58:1,57:1:36:57:2044:-180.634,-13.8615,0
chr03	2070814	.	AAAGA	AAAGG,TAAGG	164387	PASS	AB=0.450644,0.543225;ABP=72.0314,55.9484;AC=151,35;AF=0.803191,0.18617;AN=188;AO=5858,1790;CIGAR=4M1X,1X3M1X;DP=7691;DPB=7691;DPRA=82.6882,1.46436;EPP=12723.5,3881.26;EPPR=7.35324;GTI=4;LEN=1,5;MEANALT=1.86022,2.44444;MQM=59.9911,59.638;MQMR=60;NS=94;NUMALT=2;ODDS=0.68427;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=208722,62692;QR=71;RO=2;RPL=5858,1790;RPP=12723.5,3889.95;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=5858,1789;SAP=12723.5,3881.26;SAR=0,1;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,8,18:0:0:8,18:273,624:-73.2136,-51.0645,-48.6562,-22.4919,0,-17.0734	1/2:208:0,108,100:0:0:108,100:3857,3480:-597.688,-283.227,-250.716,-314.813,0,-284.71	1/2:134:0,70,63:0:0:70,63:2495,2206:-382.907,-179.529,-158.457,-203.42,0,-184.455	1/1:86:0,86,0:0:0:86,0:3050,0:-274.728,-25.8886,0,-274.728,-25.8886,-274.728	1/1:61:0,61,0:0:0:61,0:2184,0:-196.826,-18.3628,0,-196.826,-18.3628,-196.826	1/1:43:0,43,0:0:0:43,0:1536,0:-138.533,-12.9443,0,-138.533,-12.9443,-138.533	1/1:61:0,61,0:0:0:61,0:2188,0:-197.181,-18.3628,0,-197.181,-18.3628,-197.181	1/2:166:0,69,95:0:0:69,95:2468,3303:-469.784,-268.534,-247.763,-201.248,0,-172.65	1/1:60:0,60,0:0:0:60,0:2147,0:-193.497,-18.0618,0,-193.497,-18.0618,-193.497	1/1:61:1,60,0:1:35:60,0:2107,0:-186.396,-14.8642,0,-186.697,-18.0618,-189.544	1/1:122:0,120,0:0:0:120,0:4275,0:-384.569,-36.1236,0,-384.569,-36.1236,-384.569	1/2:73:0,36,37:0:0:36,37:1280,1284:-209.035,-104.72,-93.8834,-104.666,0,-93.528	1/1:58:0,58,0:0:0:58,0:2051,0:-184.86,-17.4597,0,-184.86,-17.4597,-184.86	1/1:127:0,126,0:0:0:126,0:4486,0:-403.551,-37.9298,0,-403.551,-37.9298,-403.551	1/1:51:0,51,0:0:0:51,0:1823,0:-164.35,-15.3525,0,-164.35,-15.3525,-164.35	1/1:81:0,80,0:0:0:80,0:2847,0:-256.119,-24.0824,0,-256.119,-24.0824,-256.119	1/1:123:0,121,0:0:0:121,0:4313,0:-387.987,-36.4246,0,-387.987,-36.4246,-387.987	1/1:70:0,69,1:0:0:69,1:2450,35:-220.404,-20.7711,0,-217.557,-17.5735,-217.256	1/1:68:0,68,0:0:0:68,0:2435,0:-219.405,-20.47,0,-219.405,-20.47,-219.405	1/1:163:0,162,0:0:0:162,0:5775,0:-519.505,-48.7669,0,-519.505,-48.7669,-519.505	1/1:73:0,72,1:0:0:72,1:2568,36:-231.064,-21.6742,0,-228.617,-18.9207,-228.316	1/2:76:0,29,47:0:0:29,47:1014,1657:-217.753,-135.263,-126.533,-82.8401,0,-68.6917	1/1:44:0,43,0:0:0:43,0:1544,0:-138.893,-12.9443,0,-138.893,-12.9443,-138.893	1/1:75:0,75,0:0:0:75,0:2692,0:-242.524,-22.5773,0,-242.524,-22.5773,-242.524	1/2:74:0,42,32:0:0:42,32:1504,1118:-213.953,-91.2946,-78.6513,-123.011,0,-113.378	1/2:228:0,94,133:0:0:94,133:3353,4651:-651.488,-378.152,-349.855,-273.379,0,-233.342	1/1:171:0,169,1:0:0:169,1:6032,36:-542.624,-50.8741,0,-539.687,-47.9367,-539.386	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/2:147:0,77,70:0:0:77,70:2760,2468:-425.822,-200.714,-177.535,-225.462,0,-204.39	1/1:190:0,183,7:0:0:183,7:6493,245:-584.103,-55.0885,0,-564.169,-34.8052,-562.062	1/1:85:0,85,0:0:0:85,0:3007,0:-270.858,-25.5876,0,-270.858,-25.5876,-270.858	1/2:6:0,3,3:0:0:3,3:108,96:-16.8861,-8.05389,-7.1508,-9.17208,0,-8.26899	0/0:1:0,0,0:0:0:0,0:0,0:0,0,0,0,0,0	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:8:0,4,4:0:0:4,4:140,143:-23.4042,-12.0173,-10.8132,-11.7405,0,-10.5363	1/1:208:0,206,0:0:0:206,0:7280,0:-654.894,-62.0122,0,-654.894,-62.0122,-654.894	1/1:148:0,145,1:0:0:145,1:5193,36:-467.173,-43.6494,0,-464.236,-40.6986,-463.935	1/2:122:0,53,68:0:0:53,68:1879,2373:-345.85,-192.768,-176.814,-153.077,0,-132.607	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:113:0,51,62:0:0:51,62:1817,2164:-324.467,-176.363,-161.011,-148.457,0,-129.793	1/2:69:0,27,42:0:0:27,42:968,1460:-198.004,-119.048,-110.92,-79.3096,0,-66.6663	1/2:93:0,23,69:0:0:23,69:820,2412:-263.052,-196.208,-189.284,-66.8391,0,-46.0681	1/2:74:0,37,37:0:0:37,37:1324,1284:-212.524,-104.552,-93.414,-108.324,0,-97.1859	1/1:66:0,65,0:0:0:65,0:2313,0:-208.177,-19.567,0,-208.177,-19.567,-208.177	1/2:84:0,35,49:0:0:35,49:1256,1738:-244.25,-141.798,-131.262,-102.809,0,-88.0588	1/1:86:0,86,0:0:0:86,0:3088,0:-278.147,-25.8886,0,-278.147,-25.8886,-278.147	1/1:104:0,103,1:0:0:103,1:3665,31:-329.743,-31.0061,0,-327.255,-28.2077,-326.954	1/1:98:0,97,0:0:0:97,0:3458,0:-311.179,-29.1999,0,-311.179,-29.1999,-311.179	1/2:92:0,31,59:0:0:31,59:1112,2043:-256.718,-166.013,-156.681,-90.6997,0,-72.9389	1/1:111:0,111,0:0:0:111,0:3955,0:-356.141,-33.4143,0,-356.141,-33.4143,-356.141	1/1:7:0,7,0:0:0:7,0:239,0:-21.8427,-2.10721,0,-21.8427,-2.10721,-21.8427	1/2:103:0,55,47:0:0:55,47:1971,1672:-297.01,-136.26,-119.703,-160.748,0,-146.599	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:81:1,30,50:1:36:30,50:1061,1763:-226.72,-140.605,-134.512,-83.4712,0,-71.3573	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/2:3:0,1,2:0:0:1,2:36,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chr03	2324321	.	C	T	20273.5	PASS	AB=0.511717;ABP=5.80907;AC=35;AF=0.18617;AN=188;AO=1205;CIGAR=1X;DP=5893;DPB=5893;DPRA=1.30387;EPP=2619.63;EPPR=10182.9;GTI=1;LEN=1;MEANALT=1;MQM=59.9842;MQMR=59.9531;NS=94;NUMALT=1;ODDS=0.930966;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43108;QR=167800;RO=4688;RPL=0;RPP=2619.63;RPPR=10182.9;RPR=1205;RUN=1;SAF=1205;SAP=2619.63;SAR=0;SRF=4688;SRP=10182.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.4848	0/1:81:38,43:38:1356:43:1548:-115.23,0,-97.9571	0/1:104:66,38:66:2368:38:1368:-92.1137,0,-182.071	0/0:146:146,0:146:5227:0:0:0,-43.9504,-470.567	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.423	0/0:87:87,0:87:3089:0:0:0,-26.1896,-278.216	0/1:70:26,44:26:936:44:1576:-121.059,0,-63.4865	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.339	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.743	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:45:24,21:24:856:21:756:-54.8209,0,-63.8148	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2439	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/0:106:106,0:106:3788:0:0:0,-31.9092,-341.119	0/0:110:110,0:110:3939:0:0:0,-33.1133,-354.701	0/1:74:26,48:26:932:48:1705:-131.458,0,-61.9226	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.111	0/1:49:25,24:25:896:24:854:-62.43,0,-66.2099	0/1:208:105,103:105:3748:103:3656:-266.63,0,-274.907	0/0:105:105,0:105:3776:0:0:0,-31.6081,-340.037	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:170:85,85:85:3028:85:3056:-224.093,0,-221.576	0/0:89:88,1:88:3143:1:36:0,-23.1934,-279.497	0/0:110:110,0:110:3933:0:0:0,-33.1133,-354.161	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:134:134,0:134:4811:0:0:0,-40.338,-433.143	0/0:118:118,0:118:4216:0:0:0,-35.5215,-379.621	0/1:48:30,18:30:1076:18:640:-43.4799,0,-82.7034	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:83:36,47:36:1288:47:1684:-126.862,0,-91.2381	0/1:34:22,12:22:792:12:432:-28.9862,0,-61.3707	0/1:52:35,17:35:1247:17:608:-39.3985,0,-96.8805	0/1:45:25,20:25:900:20:705:-50.2264,0,-67.7747	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/1:74:42,32:42:1512:32:1133:-80.0004,0,-114.098	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.646	0/0:110:110,0:110:3926:0:0:0,-33.1133,-353.532	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.469	0/1:71:35,36:35:1252:36:1266:-92.8617,0,-91.6119	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:109:61,48:61:2192:48:1728:-122.993,0,-164.733	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:54:19,35:19:680:35:1256:-97.0897,0,-45.2735	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:94:94,0:94:3367:0:0:0,-28.2968,-303.245	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:118:77,41:77:2734:41:1476:-97.6146,0,-210.779	0/0:110:110,0:110:3929:0:0:0,-33.1133,-353.801	0/1:58:24,34:24:852:34:1224:-93.0073,0,-59.4542	0/0:80:79,1:79:2828:1:36:0,-20.4841,-251.161	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.896	0/1:102:26,76:26:928:76:2709:-213.348,0,-53.1332	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:69:40,29:40:1440:29:1040:-73.1433,0,-109.127	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:74:74,0:74:2632:0:0:0,-22.2762,-236.498	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:176:175,1:175:6267:1:36:0,-49.383,-560.525	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:146:66,80:66:2368:80:2852:-212.968,0,-169.428	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:79:79,0:79:2832:0:0:0,-23.7814,-253.756	0/0:139:138,1:138:4960:1:36:0,-38.2449,-441.93	0/1:82:43,39:43:1548:39:1400:-101.615,0,-114.929	0/1:38:15,23:15:540:23:824:-63.0442,0,-37.4974	0/1:38:19,19:19:680:19:684:-50.4512,0,-50.09	0/1:115:48,67:48:1703:67:2404:-181.998,0,-118.937	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0283	0/1:85:35,50:35:1256:50:1792:-135.975,0,-87.7577	0/1:49:16,33:16:576:33:1184:-92.1178,0,-37.4245	0/0:59:59,0:59:2084:0:0:0,-17.7608,-187.828	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203
chr03	2324334	.	T	G	101980	PASS	AB=0.485581;ABP=7.26852;AC=153;AF=0.81383;AN=188;AO=4690;CIGAR=1X;DP=5912;DPB=5912;DPRA=0;EPP=10031.5;EPPR=2639.21;GTI=1;LEN=1;MEANALT=1;MQM=59.955;MQMR=59.9894;NS=94;NUMALT=1;ODDS=1.08289;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167796;QR=43883;RO=1222;RPL=18;RPP=10031.5;RPPR=2639.21;RPR=4672;RUN=1;SAF=4690;SAP=10187.2;SAR=0;SRF=1222;SRP=2656.55;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:80:42,38:42:1508:38:1353:-97.986,0,-111.932	0/1:101:37,64:37:1324:64:2277:-174.787,0,-89.0581	1/1:147:0,147:0:0:147:5280:-475.334,-44.2514,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:40:0,40:0:0:40:1429:-128.907,-12.0412,0	1/1:85:0,85:0:0:85:3043:-274.089,-25.5876,0	0/1:72:47,25:47:1692:25:888:-58.5634,0,-130.893	1/1:53:0,53:0:0:53:1896:-170.908,-15.9546,0	1/1:48:0,48:0:0:48:1712:-154.352,-14.4494,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:45:21,24:21:756:24:864:-64.5362,0,-54.8209	1/1:50:0,50:0:0:50:1799:-162.192,-15.0515,0	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:30:0,30:0:0:30:1061:-95.7994,-9.0309,0	1/1:22:0,22:0:0:22:792:-71.6048,-6.62266,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:106:0,106:0:0:106:3790:-341.296,-31.9092,0	1/1:111:1,110:1:36:110:3924:-349.754,-29.8161,0	0/1:73:47,26:47:1692:26:936:-62.5843,0,-130.592	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:54:0,54:0:0:54:1925:-173.522,-16.2556,0	0/1:48:24,24:24:864:24:852:-62.5504,0,-63.6331	0/1:206:102,104:102:3672:104:3732:-274.067,0,-268.641	1/1:105:0,105:0:0:105:3736:-336.439,-31.6082,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:170:86,84:86:3088:84:3008:-219.776,0,-226.972	1/1:90:1,89:1:36:89:3187:-283.455,-23.4944,0	1/1:110:0,110:0:0:110:3933:-354.161,-33.1133,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:134:0,134:0:0:134:4819:-433.863,-40.338,0	1/1:117:2,115:2:72:115:4113:-363.517,-28.3838,0	0/1:49:18,31:18:648:31:1112:-85.6409,0,-43.9014	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:84:48,36:48:1728:36:1288:-90.9371,0,-130.519	0/1:34:12,22:12:432:22:792:-61.3707,0,-28.9862	0/1:54:17,37:17:612:37:1328:-103.567,0,-39.1578	0/1:46:21,25:21:756:25:900:-67.4736,0,-54.5198	1/1:44:0,44:0:0:44:1561:-140.78,-13.2453,0	0/1:73:31,42:31:1116:42:1512:-114.399,0,-78.7765	1/1:102:1,101:1:36:101:3601:-320.695,-27.1068,0	1/1:113:0,113:0:0:113:4041:-363.876,-34.0164,0	1/1:86:0,86:0:0:86:3066:-276.167,-25.8886,0	0/1:70:36,34:36:1296:34:1220:-89.0347,0,-95.8718	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:111:49,62:49:1760:62:2224:-167.01,0,-125.27	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:55:35,20:35:1260:20:712:-47.8494,0,-97.1488	1/1:45:0,45:0:0:45:1590:-143.386,-13.5464,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:16:5,11:5:176:11:396:-31.1663,0,-11.3685	1/1:28:0,28:0:0:28:1002:-90.4954,-8.42884,0	1/1:92:0,92:0:0:92:3312:-298.297,-27.6948,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:117:41,76:41:1467:76:2698:-207.841,0,-97.1048	1/1:111:0,111:0:0:111:3954:-356.051,-33.4143,0	0/1:60:35,25:35:1252:25:877:-61.1804,0,-94.9233	1/1:83:2,81:2:72:81:2875:-252.143,-18.1488,0	1/1:123:0,123:0:0:123:4378:-394.186,-37.0267,0	0/1:103:77,26:77:2757:26:928:-52.8322,0,-217.364	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:51:0,51:0:0:51:1836:-165.52,-15.3525,0	0/1:73:32,41:32:1148:41:1472:-110.801,0,-81.6546	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:77:0,77:0:0:77:2752:-246.537,-23.1793,0	1/1:39:0,39:0:0:39:1392:-125.578,-11.7402,0	1/1:177:1,176:1:36:176:6332:-566.369,-49.684,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:146:80,66:80:2872:66:2372:-169.787,0,-214.766	1/1:48:0,48:0:0:48:1708:-154.005,-14.4494,0	0/1:7:4,3:4:129:3:104:-7.5956,0,-9.82045	1/1:44:0,44:0:0:44:1557:-140.418,-13.2453,0	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	1/1:141:1,140:1:36:140:5028:-448.047,-38.847,0	0/1:82:39,43:39:1404:43:1548:-114.929,0,-101.975	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	0/1:38:19,19:19:684:19:684:-50.4512,0,-50.4512	0/1:116:68,48:68:2439:48:1709:-119.174,0,-184.845	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:50:0,50:0:0:50:1781:-160.571,-15.0515,0	0/1:15:10,5:10:360:5:180:-12.0283,0,-28.2289	0/1:86:51,35:51:1827:35:1260:-87.8169,0,-138.822	0/1:51:35,16:35:1256:16:562:-35.5552,0,-97.9928	1/1:60:0,60:0:0:60:2141:-192.956,-18.0618,0	1/1:50:0,50:0:0:50:1785:-160.933,-15.0515,0
chr03	2332184	.	A	G	177559	PASS	AB=0.472345;ABP=28.5926;AC=152;AF=0.817204;AN=186;AO=8240;CIGAR=1X;DP=10290;DPB=10290;DPRA=0;EPP=17887.3;EPPR=4411.14;GTI=1;LEN=1;MEANALT=1.08602;MQM=59.9971;MQMR=60;NS=93;NUMALT=1;ODDS=0.291348;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293619;QR=73034;RO=2042;RPL=1;RPP=17887.3;RPPR=4411.14;RPR=8239;RUN=1;SAF=0;SAP=17895.9;SAR=8240;SRF=0;SRP=4437.16;SRR=2042;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:33,24:33:1188:24:856:-60.2024,0,-90.0699	0/1:68:30,38:30:1076:38:1349:-101.238,0,-76.6828	0/1:169:81,88:81:2904:88:3138:-231.771,0,-210.721	1/1:338:0,338:0:0:338:12049:-1084.26,-101.748,0	1/1:81:2,79:2:72:79:2835:-248.551,-17.5467,0	1/1:71:0,71:0:0:71:2497:-224.98,-21.3731,0	1/1:105:0,105:0:0:105:3750:-337.699,-31.6082,0	0/1:72:36,36:36:1279:36:1287:-94.4586,0,-93.7383	1/1:153:0,153:0:0:153:5446:-490.268,-46.0576,0	1/1:99:0,99:0:0:99:3532:-318.088,-29.802,0	1/1:46:0,46:0:0:46:1630:-146.987,-13.8474,0	0/1:123:55,68:55:1976:68:2432:-182.109,0,-141.088	1/1:85:0,85:0:0:85:3035:-273.38,-25.5876,0	1/1:64:0,64:0:0:64:2285:-205.91,-19.2659,0	1/1:90:0,90:0:0:90:3240:-291.82,-27.0927,0	1/1:75:0,75:0:0:75:2623:-236.315,-22.5773,0	1/1:38:0,38:0:0:38:1350:-121.799,-11.4391,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:270:1,269:1:36:269:9627:-862.783,-77.6798,0	1/1:258:0,258:0:0:258:9156:-824.011,-77.6657,0	0/1:182:121,61:121:4307:61:2192:-142.758,0,-333.018	1/1:159:0,159:0:0:159:5644:-508.08,-47.8638,0	1/1:105:0,105:0:0:105:3752:-337.879,-31.6082,0	0/1:141:83,58:83:2962:58:2068:-143.946,0,-224.367	0/1:259:140,118:140:5032:118:4204:-300.516,0,-374.998	1/1:143:0,142:0:0:142:5068:-455.904,-42.7463,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:272:135,137:135:4847:137:4872:-356.752,0,-354.501	1/1:107:2,105:2:72:105:3744:-330.323,-25.3735,0	1/1:94:1,93:1:36:93:3348:-297.937,-24.6985,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:252:1,250:1:36:250:8877:-795.319,-72.3201,0	1/1:162:0,162:0:0:162:5704:-513.479,-48.7669,0	0/1:43:21,22:21:743:22:771:-56.7655,0,-54.249	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:345:175,170:175:6267:170:6001:-436.341,0,-460.268	0/1:35:15,20:15:532:20:703:-53.0575,0,-37.677	0/1:240:123,116:123:4395:116:4124:-299.146,0,-323.526	0/1:62:30,32:30:1067:32:1152:-85.3263,0,-77.6774	1/1:72:1,71:1:36:71:2528:-224.173,-18.0759,0	0/1:142:65,76:65:2317:76:2683:-199.015,0,-166.092	1/1:152:0,152:0:0:152:5428:-488.648,-45.7566,0	1/1:212:0,212:0:0:212:7551:-679.405,-63.8184,0	1/1:125:0,125:0:0:125:4459:-401.478,-37.6288,0	0/1:81:41,39:41:1476:39:1396:-101.497,0,-108.694	1/1:181:0,181:0:0:181:6446:-580.227,-54.4864,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	0/1:157:74,83:74:2656:83:2951:-218.56,0,-192.024	1/1:66:0,66:0:0:66:2369:-213.468,-19.868,0	.:.:.:.:.:.:.:.	0/1:172:88,84:88:3148:84:2970:-215.754,0,-231.768	1/1:80:1,79:1:36:79:2836:-251.88,-20.4841,0	0/1:5:4,1:4:144:1:25:-0.994713,0,-11.8085	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	1/1:84:0,84:0:0:84:2976:-268.071,-25.2865,0	1/1:99:0,99:0:0:99:3543:-319.078,-29.802,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:197:105,92:105:3760:92:3267:-234.946,0,-279.297	1/1:189:0,189:0:0:189:6754:-607.932,-56.8947,0	0/1:86:38,48:38:1340:48:1715:-128.746,0,-95.0087	1/1:108:0,108:0:0:108:3826:-344.537,-32.5112,0	1/1:228:4,224:4:144:224:8005:-707.158,-55.3212,0	0/1:147:87,60:87:3120:60:2116:-146.454,0,-236.775	1/1:39:0,39:0:0:39:1370:-123.595,-11.7402,0	1/1:64:1,63:1:36:63:2254:-199.523,-15.6676,0	0/1:36:19,17:19:676:17:612:-44.5764,0,-50.3309	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:137:0,137:0:0:137:4869:-438.363,-41.2411,0	1/1:115:0,115:0:0:115:4115:-370.534,-34.6185,0	1/1:163:0,162:0:0:162:5758:-517.976,-48.7669,0	1/1:218:0,218:0:0:218:7797:-701.758,-65.6245,0	0/1:114:53,61:53:1896:61:2188:-162.868,0,-136.601	1/1:111:0,111:0:0:111:3941:-354.881,-33.4143,0	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	1/1:111:0,111:0:0:111:3957:-356.321,-33.4143,0	1/1:142:0,142:0:0:142:5086:-457.882,-42.7463,0	1/1:301:0,301:0:0:301:10745:-966.957,-90.61,0	0/1:57:35,22:35:1235:22:788:-54.0861,0,-94.2947	0/1:77:45,32:45:1620:32:1144:-80.0902,0,-122.911	0/1:76:43,33:43:1532:33:1180:-83.6298,0,-115.295	0/1:178:86,92:86:3065:92:3291:-242.826,0,-222.495	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:99:0,99:0:0:99:3512:-316.29,-29.802,0	1/1:97:0,97:0:0:97:3463:-311.882,-29.1999,0	0/1:36:21,15:21:756:15:540:-38.0995,0,-57.5301	0/1:82:45,37:45:1620:37:1323:-94.6869,0,-121.406	0/1:104:80,23:80:2838:23:819:-42.6658,0,-224.293	1/1:155:0,155:0:0:155:5568:-501.241,-46.6597,0	1/1:137:1,136:1:36:136:4865:-434.403,-37.6428,0
chr03	2439057	.	G	A	59103.2	PASS	AB=0.521158;ABP=8.24795;AC=150;AF=0.806452;AN=186;AO=2754;CIGAR=1X;DP=3431;DPB=3431;DPRA=0;EPP=5983.25;EPPR=1462.24;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9717;MQMR=60;NS=93;NUMALT=1;ODDS=3.47858;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98328;QR=23805;RO=672;RPL=0;RPP=5983.25;RPPR=1462.24;RPR=2754;RUN=1;SAF=0;SAP=5983.25;SAR=2754;SRF=0;SRP=1462.24;SRR=672;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:6,2:6:207:2:72:-4.42848,0,-16.5587	0/1:34:16,18:16:572:18:644:-48.0556,0,-41.5784	0/1:37:15,22:15:532:22:784:-59.7452,0,-37.075	1/1:59:0,59:0:0:59:2098:-189.076,-17.7608,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:60:29,30:29:1027:30:1052:-76.906,0,-74.6603	1/1:22:0,22:0:0:22:775:-70.0712,-6.62266,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:38:1,37:1:36:37:1328:-116.224,-7.84087,0	0/1:23:10,13:10:351:13:445:-33.4511,0,-25.003	1/1:41:0,41:0:0:41:1450:-130.794,-12.3422,0	1/1:48:0,48:0:0:48:1711:-154.275,-14.4494,0	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/0:29:27,2:27:964:2:72:0,-1.89315,-80.2401	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:40:0,40:0:0:40:1419:-128.007,-12.0412,0	0/1:14:11,3:11:377:3:108:-5.86075,0,-30.0435	0/1:112:51,61:51:1794:61:2179:-162.66,0,-128.025	1/1:62:0,62:0:0:62:2216:-199.703,-18.6639,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:63:30,33:30:1059:33:1184:-87.9034,0,-76.6555	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:7:3,4:3:100:4:144:-11.2064,0,-7.22323	1/1:103:0,103:0:0:103:3671:-330.593,-31.0061,0	1/1:57:0,57:0:0:57:2035:-183.422,-17.1587,0	0/1:25:16,9:16:561:9:311:-20.798,0,-43.2914	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:36:24,12:24:851:12:432:-28.3841,0,-66.0724	0/1:14:5,9:5:176:9:320:-24.9279,0,-11.9706	0/1:41:20,21:20:712:21:748:-55.3031,0,-52.0644	0/1:29:15,14:15:531:14:485:-35.2471,0,-39.392	1/1:28:0,27:0:0:27:972:-87.4381,-8.12781,0	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:51:1,50:1:32:50:1787:-157.913,-12.1532,0	1/1:53:0,53:0:0:53:1877:-169.207,-15.9546,0	0/1:68:28,40:28:993:40:1429:-108.438,0,-69.2125	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:53:29,24:29:1040:24:856:-61.4065,0,-77.9598	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:51:34,17:34:1209:17:608:-39.6995,0,-93.7616	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:36:0,36:0:0:36:1271:-114.69,-10.8371,0	1/1:84:0,84:0:0:84:2989:-269.241,-25.2865,0	.:.:.:.:.:.:.:.	0/1:107:34,73:34:1220:73:2619:-203.746,0,-77.8966	1/1:77:2,75:2:72:75:2687:-235.238,-16.3426,0	0/1:46:23,22:23:811:22:792:-57.8428,0,-59.5477	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:27:18,8:18:648:8:288:-18.0808,0,-50.4653	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:85:37,48:37:1304:48:1728:-130.218,0,-92.0711	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:42:0,42:0:0:42:1512:-136.37,-12.6433,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:39:13,26:13:455:26:936:-72.8193,0,-29.5418	1/1:70:0,70:0:0:70:2495:-224.803,-21.0721,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:76:0,76:0:0:76:2684:-241.776,-22.8783,0	0/1:76:32,44:32:1148:44:1566:-118.329,0,-80.7516	0/1:31:14,17:14:491:17:604:-45.3587,0,-35.1892	0/1:44:22,22:22:766:22:783:-57.4164,0,-56.0131	0/1:66:28,37:28:1000:37:1313:-98.543,0,-70.3887	1/1:12:0,12:0:0:12:419:-38.0427,-3.61236,0	1/1:44:0,44:0:0:44:1553:-140.059,-13.2453,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:17:3,14:3:108:14:500:-40.2187,0,-4.95766	0/1:56:25,31:25:862:31:1112:-83.5337,0,-61.033	0/1:30:21,9:21:756:9:324:-20.475,0,-59.3363	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:55:0,55:0:0:55:1952:-175.953,-16.5567,0
chr03	2439353	.	T	C	11847.5	PASS	AB=0.517216;ABP=6.52443;AC=34;AF=0.180851;AN=188;AO=731;CIGAR=1X;DP=4065;DPB=4065;DPRA=1.12798;EPP=1590.36;EPPR=7242.7;GTI=1;LEN=1;MEANALT=1;MQM=59.8837;MQMR=59.961;NS=94;NUMALT=1;ODDS=0.108065;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25794;QR=118426;RO=3334;RPL=0;RPP=1590.36;RPPR=7242.7;RPR=731;RUN=1;SAF=0;SAP=1590.36;SAR=731;SRF=0;SRP=7242.7;SRR=3334;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:8,11:8:284:11:388:-29.5378,0,-20.1838	0/1:44:21,23:21:748:23:824:-61.238,0,-54.4	0/1:27:15,12:15:532:12:419:-29.9149,0,-40.0853	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.408	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:68:68,0:68:2403:0:0:0,-20.47,-216.527	0/1:72:30,42:30:1055:42:1457:-109.745,0,-73.5859	0/0:30:30,0:30:1056:0:0:0,-9.0309,-95.3509	0/0:40:40,0:40:1398:0:0:0,-12.0412,-126.116	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:17:3,14:3:108:14:488:-39.132,0,-4.95766	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9369	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:100:100,0:100:3553:0:0:0,-30.103,-319.974	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:65:27,38:27:964:38:1346:-101.872,0,-67.5099	0/0:18:18,0:18:626:0:0:0,-5.41854,-56.6633	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/1:19:12,7:12:424:7:248:-16.9446,0,-32.7768	0/1:177:85,92:85:3027:92:3214:-236.198,0,-219.378	0/0:55:55,0:55:1929:0:0:0,-16.5566,-173.885	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:104:57,47:57:2040:47:1628:-115.496,0,-152.295	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.918	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:60:57,3:57:2036:3:108:0,-7.98663,-173.437	0/0:104:104,0:104:3716:0:0:0,-31.3071,-334.642	0/0:135:135,0:135:4746:0:0:0,-40.639,-427.304	0/0:186:185,1:185:6590:1:36:0,-52.3933,-589.571	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.395	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	0/0:63:63,0:63:2199:0:0:0,-18.9649,-198.174	0/1:54:30,24:30:1062:24:852:-60.7448,0,-79.6344	0/1:20:11,9:11:392:9:324:-23.4853,0,-29.5995	0/1:52:34,18:34:1208:18:644:-42.637,0,-93.3644	0/1:17:7,10:7:248:10:352:-26.9003,0,-17.5467	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:33:23,10:23:807:10:356:-22.4473,0,-63.0152	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/1:73:30,43:30:1076:43:1528:-115.83,0,-75.1777	0/0:91:91,0:91:3236:0:0:0,-27.3937,-291.461	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:50:25,25:25:881:25:892:-65.5482,0,-64.5367	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:36:12,24:12:432:24:836:-64.7204,0,-28.3841	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9493	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:6:2,4:2:72:4:144:-11.5065,0,-5.03054	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:87:42,45:42:1496:45:1612:-119.179,0,-108.744	0/0:94:94,0:94:3356:0:0:0,-28.2968,-302.257	0/1:26:8,18:8:273:18:640:-50.0575,0,-17.0734	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.355	0/1:59:30,29:30:1072:29:1023:-74.6212,0,-79.0317	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:24:24,0:24:841:0:0:0,-7.22472,-76.0064	0/1:41:24,17:24:864:17:600:-41.987,0,-65.7403	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:42:42,0:42:1484:0:0:0,-12.6433,-133.855	0/0:7:7,0:7:235:0:0:0,-2.10721,-21.4779	0/0:86:86,0:86:3054:0:0:0,-25.8886,-275.09	0/0:74:74,0:74:2609:0:0:0,-22.2762,-235.058	0/1:62:31,31:31:1116:31:1108:-81.3671,0,-82.0878	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/1:6:5,1:5:171:1:36:-1.79209,0,-13.9193	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:43:43,0:43:1501:0:0:0,-12.9443,-135.381	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.576	0/1:40:18,22:18:630:22:784:-58.8419,0,-44.9834	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:19:1,18:1:36:18:625:-52.9742,-2.1213,0	0/1:50:15,35:15:532:35:1219:-94.8477,0,-33.1616	0/0:22:22,0:22:767:0:0:0,-6.62266,-69.3494	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:44:41,3:41:1460:3:104:0,-3.54251,-121.993	0/1:40:25,15:25:896:15:532:-36.1719,0,-68.9192	0/1:10:2,8:2:72:8:279:-22.4372,0,-3.82642	0/0:39:39,0:39:1375:0:0:0,-11.7402,-124.048	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477
chr03	2524055	.	C	T	22787	PASS	AB=0.550375;ABP=55.9537;AC=36;AF=0.191489;AN=188;AO=1335;CIGAR=1X;DP=6168;DPB=6168;DPRA=1.20973;EPP=2901.93;EPPR=10489.1;GTI=3;LEN=1;MEANALT=1.05;MQM=59.9551;MQMR=59.9874;NS=94;NUMALT=1;ODDS=0.402554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47572;QR=172508;RO=4829;RPL=0;RPP=2901.93;RPPR=10489.1;RPR=1335;RUN=1;SAF=1335;SAP=2901.93;SAR=0;SRF=4829;SRP=10489.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:15,14:15:536:14:485:-35.2471,0,-39.8449	0/1:66:26,40:26:913:40:1420:-108.229,0,-62.616	0/1:177:87,90:87:3112:90:3194:-234.396,0,-227.025	0/0:176:175,1:175:6232:1:36:0,-49.383,-557.382	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:111:33,78:33:1168:78:2789:-217.834,0,-72.0129	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:75:36,39:36:1292:39:1383:-102.191,0,-94.0065	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.447	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/0:210:210,0:210:7485:0:0:0,-63.2163,-673.696	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.448	0/1:68:19,49:19:684:49:1753:-137.577,0,-41.4203	0/0:75:74,0:74:2652:0:0:0,-22.2762,-238.566	0/0:29:28,0:28:992:0:0:0,-8.42884,-89.2348	0/1:39:20,19:20:716:19:680:-49.789,0,-53.0275	0/1:133:64,69:64:2292:69:2463:-181.887,0,-166.504	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:212:96,116:96:3436:116:4141:-309.055,0,-245.635	0/0:130:125,5:125:4460:5:180:0,-22.5818,-385.02	0/0:51:50,1:50:1796:1:32:0,-12.1532,-158.723	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:30:12,18:12:428:18:631:-48.0842,0,-29.8279	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:132:73,58:73:2600:58:2073:-147.044,0,-194.454	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/1:134:58,76:58:2072:76:2704:-203.267,0,-146.356	0/1:40:17,23:17:608:23:816:-61.449,0,-43.0108	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:51:28,23:28:993:23:824:-59.1308,0,-74.33	0/0:114:114,0:114:4046:0:0:0,-34.3174,-364.327	0/0:135:134,1:134:4769:1:36:0,-37.0408,-425.77	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:125:61,64:61:2164:64:2288:-168.553,0,-157.399	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:96:51,45:51:1820:45:1587:-114.219,0,-135.182	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:94:44,50:44:1576:50:1776:-131.826,0,-113.835	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:63:63,0:63:2233:0:0:0,-18.9649,-201.233	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:140:52,88:52:1868:88:3151:-241.67,0,-126.255	0/0:95:95,0:95:3388:0:0:0,-28.5978,-305.136	0/1:40:29,11:29:1028:11:396:-23.9415,0,-80.7918	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.117	0/0:121:121,0:121:4324:0:0:0,-36.4246,-389.337	0/1:122:40,82:40:1432:82:2896:-224.15,0,-92.4519	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:27:10,17:10:360:17:599:-46.1103,0,-24.6165	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:91:91,0:91:3248:0:0:0,-27.3937,-292.542	0/0:134:134,0:134:4788:0:0:0,-40.338,-431.078	0/1:77:23,54:23:820:54:1931:-150.887,0,-50.9432	0/0:90:90,0:90:3209:0:0:0,-27.0927,-289.032	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.87	0/0:118:118,0:118:4221:0:0:0,-35.5215,-380.069	0/0:203:203,0:203:7256:0:0:0,-61.1091,-653.094	0/1:36:18,18:18:648:18:644:-47.4535,0,-47.8148	0/1:59:27,32:27:968:32:1148:-85.8691,0,-69.6766	0/1:33:18,15:18:644:15:540:-39.0025,0,-48.3566	0/1:74:37,37:37:1323:37:1320:-96.8257,0,-97.0951	0/0:17:16,1:16:572:1:36:0,-1.51923,-48.2152	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:34:18,16:18:648:16:568:-41.2168,0,-48.4169	0/1:61:33,27:33:1180:27:968:-69.0158,0,-88.0865	0/1:44:13,31:13:464:31:1116:-87.5064,0,-28.8522	0/0:119:119,0:119:4260:0:0:0,-35.8226,-383.579	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806
chr03	2524953	.	TGT	TGG	113180	PASS	AB=0.446239;ABP=71.4208;AC=153;AF=0.81383;AN=188;AO=5315;CIGAR=2M1X;DP=6911;DPB=6911.67;DPRA=10.6052;EPP=11544.4;EPPR=3299.31;GTI=2;LEN=1;MEANALT=1.52688;MQM=59.9419;MQMR=59.9493;NS=94;NUMALT=1;ODDS=0.00621742;PAIRED=0;PAIREDR=0;PAO=1;PQA=18;PQR=0;PRO=0;QA=188990;QR=50385;RO=1518;RPL=1;RPP=11535.7;RPPR=3299.31;RPR=5314;RUN=1;SAF=1;SAP=11535.7;SAR=5314;SRF=0;SRP=3299.31;SRR=1518;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:18,12:18:588:12:424:-29.4651,0,-44.1983	0/1:125:65,60:65:2149:60:2124:-153.728,0,-156.043	0/1:115:58,57:58:1937:57:2044:-149.613,0,-139.983	1/1:222:1,217:1:33:217:7727:-692.202,-62.6448,0	1/1:57:0,57:0:0:57:2011:-181.259,-17.1587,0	1/1:17:1,16:1:34:16:567:-47.9618,-1.7186,0	1/1:126:0,125:0:0:125:4444:-399.908,-37.6288,0	0/1:115:45,70:45:1476:70:2495:-190.106,0,-98.505	1/1:72:0,70:0:0:70:2470:-222.297,-21.0721,0	1/1:79:0,78:0:0:78:2766:-248.814,-23.4803,0	1/1:27:0,27:0:0:27:953:-86.0833,-8.12781,0	0/1:49:29,19:29:986:19:672:-45.9897,0,-74.2367	1/1:52:0,51:0:0:51:1832:-164.86,-15.3525,0	1/1:40:0,39:0:0:39:1385:-124.665,-11.7402,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:28:0,28:0:0:28:991:-89.5035,-8.42884,0	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	1/1:32:0,31:0:0:31:1094:-98.486,-9.33193,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:141:0,140:0:0:140:4976:-447.708,-42.1442,0	1/1:169:0,169:0:0:169:6022:-542.085,-50.8741,0	0/1:99:61,38:61:1994:38:1350:-91.9833,0,-149.925	1/1:89:0,85:0:0:85:3032:-272.823,-25.5876,0	1/1:75:0,75:0:0:75:2661:-239.735,-22.5773,0	0/1:53:31,22:31:1042:22:788:-55.2902,0,-78.1278	0/1:256:124,132:124:4153:132:4660:-342.5,0,-296.9	1/1:158:0,157:0:0:157:5572:-501.319,-47.2617,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:201:99,101:99:3342:101:3606:-264.252,0,-240.517	1/1:73:2,71:2:72:71:2535:-221.564,-15.1385,0	1/1:115:0,113:0:0:113:4052:-364.615,-34.0164,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:16:0,15:0:0:15:522:-47.0231,-4.51545,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:1,6:1:28:6:216:-17.6833,0,-0.692517	1/1:119:1,118:1:20:118:4101:-367.273,-33.8226,0	1/1:108:1,105:1:34:105:3723:-331.92,-28.8185,0	0/1:42:26,16:26:860:16:562:-38.1339,0,-65.0604	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:117:58,59:58:1908:59:2089:-153.058,0,-136.764	0/1:25:19,5:19:623:5:176:-8.66835,0,-48.8717	0/1:132:74,57:74:2421:57:2020:-142.355,0,-178.426	0/1:62:36,26:36:1197:26:915:-64.0017,0,-89.3606	1/1:36:0,36:0:0:36:1275:-115.052,-10.8371,0	0/1:88:49,39:49:1642:39:1381:-98.0961,0,-121.57	1/1:72:0,72:0:0:72:2570:-231.519,-21.6742,0	1/1:164:0,157:0:0:157:5544:-498.794,-47.2617,0	1/1:79:0,78:0:0:78:2765:-248.81,-23.4803,0	0/1:90:49,37:49:1651:37:1328:-93.6078,0,-122.658	1/1:127:0,123:0:0:123:4387:-394.745,-37.0267,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:108:55,53:55:1852:53:1872:-136.243,0,-134.443	1/1:23:0,23:0:0:23:809:-73.1283,-6.92369,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:94:64,30:64:2078:30:1068:-68.1352,0,-158.987	1/1:32:0,31:0:0:31:1099:-98.9372,-9.33193,0	0/0:7:7,0:7:225:0:0:0,-2.10721,-20.565	0/1:11:10,1:10:330:1:36:-0.286945,0,-26.7087	1/1:49:1,44:1:28:44:1563:-138.175,-11.0211,0	1/1:65:1,64:1:34:64:2278:-201.882,-16.168,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:211:117,94:117:3849:94:3334:-236.761,0,-283.102	1/1:143:1,139:1:28:139:4929:-440.957,-39.6244,0	0/1:41:16,25:16:530:25:888:-67.8968,0,-35.6712	1/1:73:0,70:0:0:70:2512:-226.054,-21.0721,0	1/1:199:0,197:0:0:197:6979:-627.87,-59.3029,0	0/1:69:55,13:55:1832:13:468:-21.6492,0,-144.346	1/1:12:0,11:0:0:11:396:-35.7053,-3.31133,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:48:30,17:30:958:17:599:-39.8057,0,-72.0835	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:94:1,92:1:36:92:3277:-291.59,-24.7174,0	1/1:50:0,49:0:0:49:1760:-158.414,-14.7505,0	1/1:97:0,97:0:0:97:3446:-310.325,-29.1999,0	1/1:123:0,119:0:0:119:4240:-381.452,-35.8226,0	0/1:113:47,66:47:1516:66:2347:-177.473,0,-102.702	1/1:88:0,88:0:0:88:3147:-283.392,-26.4906,0	0/1:7:6,1:6:186:1:36:-1.49107,0,-14.938	1/1:124:0,121:0:0:121:4315:-388.253,-36.4246,0	1/1:66:0,65:0:0:65:2340:-210.578,-19.567,0	1/1:214:1,209:1:36:209:7477:-669.415,-59.9614,0	0/1:78:49,29:49:1657:29:1040:-70.434,0,-125.931	0/1:50:23,27:23:765:27:945:-70.3104,0,-54.1055	0/1:64:41,23:41:1375:23:815:-54.4048,0,-104.775	0/1:122:72,50:72:2447:50:1787:-124.386,0,-183.757	1/1:23:0,22:0:0:22:755:-67.9813,-6.62266,0	1/1:46:0,45:0:0:45:1608:-144.65,-13.5464,0	1/1:32:0,32:0:0:32:1152:-103.982,-9.63296,0	0/1:15:11,4:11:367:4:144:-8.79817,0,-28.837	0/1:35:20,15:20:650:15:540:-38.4005,0,-48.2421	0/1:53:41,12:41:1380:12:428:-22.9042,0,-108.538	1/1:103:0,99:0:0:99:3542:-318.682,-29.802,0	1/1:53:1,52:1:36:52:1849:-163.09,-12.3563,0
chr03	2524960	.	GCC	ACC,ACT	148328	PASS	AB=0.448741,0.548705;ABP=65.5647,59.4868;AC=153,35;AF=0.81383,0.18617;AN=188;AO=5344,1522;CIGAR=1X2M,1X1M1X;DP=6899;DPB=6899;DPRA=10.5868,1.30822;EPP=11555.3,3307.99;EPPR=9.52472;GTI=2;LEN=1,3;MEANALT=1.73118,2.27273;MQM=59.9227,59.9586;MQMR=60;NS=94;NUMALT=2;ODDS=0.304508;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=190441,52953;QR=106;RO=3;RPL=6,0;RPP=11555.3,3307.99;RPPR=9.52472;RPR=5338,1522;RUN=1,1;SAF=0,0;SAP=11607.4,3307.99;SAR=5344,1522;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:31:0,13,18:0:0:13,18:464,646:-90.8789,-53.0528,-49.1394,-38.1837,0,-32.7652	1/2:123:0,58,65:0:0:58,65:2076,2296:-356.56,-187.335,-169.875,-169.581,0,-150.014	1/2:114:0,55,58:0:0:55,58:1980,2029:-326.623,-165.061,-148.504,-161.558,0,-144.098	1/1:221:0,221,0:0:0:221,0:7866,0:-707.966,-66.5276,0,-707.966,-66.5276,-707.966	1/1:58:0,57,0:0:0:57,0:2018,0:-181.528,-17.1587,0,-181.528,-17.1587,-181.528	1/1:16:0,15,1:0:0:15,1:536,36:-48.2152,-4.51545,0,-45.2776,-1.21821,-44.9765	1/1:124:0,121,1:0:0:121,1:4335,28:-389.988,-36.4246,0,-387.77,-34.2325,-387.469	1/2:115:0,70,45:0:0:70,45:2505,1592:-334.219,-130.023,-108.951,-204.551,0,-191.004	1/1:75:0,71,1:0:0:71,1:2536,27:-228.153,-21.3731,0,-226.025,-19.2567,-225.724	1/1:78:0,78,0:0:0:78,0:2762,0:-248.809,-23.4803,0,-248.809,-23.4803,-248.809	1/1:25:0,25,0:0:0:25,0:887,0:-80.1481,-7.52575,0,-80.1481,-7.52575,-80.1481	1/2:50:0,19,31:0:0:19,31:669,1075:-142.178,-87.7214,-82.0019,-54.8062,0,-45.4743	1/1:52:0,52,0:0:0:52,0:1863,0:-167.949,-15.6536,0,-167.949,-15.6536,-167.949	1/1:39:0,38,0:0:0:38,0:1343,0:-120.839,-11.4391,0,-120.839,-11.4391,-120.839	1/1:31:0,31,0:0:0:31,0:1099,0:-99.2195,-9.33193,0,-99.2195,-9.33193,-99.2195	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/1:31:1,30,0:1:34:30,0:1071,0:-93.3027,-5.93302,0,-93.6037,-9.0309,-96.3612	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:139:0,138,0:0:0:138,0:4878,0:-438.814,-41.5421,0,-438.814,-41.5421,-438.814	1/1:173:1,172,0:1:36:172,0:6118,0:-547.122,-48.4799,0,-547.423,-51.7772,-550.36	1/2:101:0,40,60:0:0:40,60:1422,2101:-286.892,-171.024,-158.983,-115.949,0,-97.8874	1/1:88:0,88,0:0:0:88,0:3122,0:-281.203,-26.4906,0,-281.203,-26.4906,-281.203	1/1:75:0,75,0:0:0:75,0:2663,0:-239.915,-22.5773,0,-239.915,-22.5773,-239.915	1/2:52:0,21,31:0:0:21,31:748,1091:-150.134,-89.1651,-82.8435,-61.3237,0,-51.9917	1/2:257:0,133,124:0:0:133,124:4741,4317:-737.839,-351.38,-311.343,-386.812,0,-349.484	1/1:154:0,154,0:0:0:154,0:5497,0:-494.856,-46.3586,0,-494.856,-46.3586,-494.856	1/1:19:0,18,0:0:0:18,0:644,0:-57.9309,-5.41854,0,-57.9309,-5.41854,-57.9309	1/2:202:0,103,99:0:0:103,99:3650,3476:-580.597,-283.252,-252.246,-297.697,0,-267.895	1/1:72:0,70,2:0:0:70,2:2491,62:-224.132,-21.0721,0,-219.156,-15.7855,-218.554	1/1:114:0,114,0:0:0:114,0:4061,0:-365.677,-34.3174,0,-365.677,-34.3174,-365.677	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:7:0,6,1:0:0:6,1:216,35:-20.8306,-3.1976,-1.39142,-17.9843,0,-17.6833	1/1:116:0,116,0:0:0:116,0:4098,0:-369.005,-34.9195,0,-369.005,-34.9195,-369.005	1/1:107:0,105,1:0:0:105,1:3755,36:-337.771,-31.6082,0,-334.834,-28.6707,-334.533	1/2:42:0,16,26:0:0:16,26:566,895:-119.007,-73.0345,-68.218,-46.3222,0,-38.4954	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:117:0,59,58:0:0:59,58:2124,1995:-335.662,-162.346,-144.585,-173.667,0,-156.208	1/2:25:0,6,19:0:0:6,19:216,670:-72.5327,-54.9064,-53.1003,-17.9843,0,-12.2648	1/2:133:0,58,74:0:0:58,74:2071,2553:-376.312,-207.463,-190.003,-168.919,0,-146.643	1/2:60:0,25,35:0:0:25,35:887,1236:-173.275,-101.006,-93.4806,-72.6224,0,-62.0863	1/1:35:0,35,0:0:0:35,0:1239,0:-111.814,-10.5361,0,-111.814,-10.5361,-111.814	1/2:88:0,39,49:0:0:39,49:1396,1703:-252.646,-138.8,-127.06,-114.199,0,-99.4485	1/1:72:0,70,0:0:0:70,0:2515,0:-226.239,-21.0721,0,-226.239,-21.0721,-226.239	1/1:164:1,163,0:1:36:163,0:5817,0:-520.04,-45.7706,0,-520.341,-49.0679,-523.279	1/1:78:0,78,0:0:0:78,0:2796,0:-251.879,-23.4803,0,-251.879,-23.4803,-251.879	1/2:90:0,38,52:0:0:38,52:1364,1764:-254.625,-143.383,-131.944,-111.593,0,-95.9396	1/1:127:0,127,0:0:0:127,0:4485,0:-403.816,-38.2308,0,-403.816,-38.2308,-403.816	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:111:0,56,55:0:0:56,55:2008,1936:-321.737,-157.958,-141.101,-164.133,0,-147.577	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:96:0,32,64:0:0:32,64:1127,2210:-271.652,-179.897,-170.264,-92.1045,0,-72.8386	1/1:31:0,31,0:0:0:31,0:1108,0:-100.031,-9.33193,0,-100.031,-9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chr03	2667428	.	TATG	GATG,GATA	109634	PASS	AB=0.441283,0.55613;ABP=60.8964,55.9086;AC=150,32;AF=0.824176,0.175824;AN=182;AO=3934,1082;CIGAR=1X3M,1X2M1X;DP=5034;DPB=5035.75;DPRA=0,1.23473;EPP=8545.58,2352.54;EPPR=11.6962;GTI=2;LEN=1,4;MEANALT=1.53846,2.16667;MQM=59.9766,59.9741;MQMR=60;NS=91;NUMALT=2;ODDS=0.826247;PAIRED=0,0;PAIREDR=0;PAO=3.5,3.5;PQA=124,124;PQR=0;PRO=0;QA=140764,38566;QR=131;RO=4;RPL=3934,1082;RPP=8545.58,2352.54;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8545.58,2352.54;SAR=3934,1082;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,16,6:0:0:16,6:568,215:-64.1711,-17.893,-13.0765,-46.6354,0,-44.8292	1/2:68:0,38,30:0:0:38,30:1360,1073:-198.756,-87.8517,-76.4126,-111.261,0,-102.231	1/2:76:0,49,27:0:0:49,27:1740,971:-221.356,-79.58,-64.8296,-142.133,0,-134.006	1/1:78:0,78,0:0:0:78,0:2792,0:-251.52,-23.4803,0,-251.52,-23.4803,-251.52	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:47:0,47,0:0:0:47,0:1680,0:-151.428,-14.1484,0,-151.428,-14.1484,-151.428	1/2:77:0,41,36:0:0:41,36:1449,1279:-222.584,-104.576,-92.2339,-118.362,0,-107.525	1/1:74:0,74,0:0:0:74,0:2644,0:-238.207,-22.2762,0,-238.207,-22.2762,-238.207	1/1:98:2,96,0:2:72:96,0:3417,0:-300.907,-22.6642,0,-301.509,-28.8989,-307.384	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/2:45:0,17,28:0:0:17,28:604,991:-130.293,-81.074,-75.9565,-49.5731,0,-41.1443	1/1:49:0,49,0:0:0:49,0:1751,0:-157.873,-14.7505,0,-157.873,-14.7505,-157.873	1/1:44:0,43,0:0:0:43,0:1507,0:-135.563,-12.9443,0,-135.563,-12.9443,-135.563	1/1:48:0,48,0:0:0:48,0:1720,0:-155.086,-14.4494,0,-155.086,-14.4494,-155.086	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/1:46:0,45,1:0:0:45,1:1608,35:-144.652,-13.5464,0,-141.804,-10.3488,-141.503	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:78:0,78,0:0:0:78,0:2796,0:-251.88,-23.4803,0,-251.88,-23.4803,-251.88	1/1:78:0,78,0:0:0:78,0:2777,0:-250.111,-23.4803,0,-250.111,-23.4803,-250.111	1/2:92:0,26,66:0:0:26,66:932,2344:-267.366,-191.351,-183.525,-76.3721,0,-56.5041	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/1:71:0,71,0:0:0:71,0:2540,0:-228.792,-21.3731,0,-228.792,-21.3731,-228.792	1/2:64:0,24,40:0:0:24,40:860,1426:-186.736,-116.596,-109.372,-70.4971,0,-58.4559	1/2:233:1,99,132:1:23:99,132:3544,4700:-670.072,-381.363,-353.329,-287.303,0,-249.335	1/1:99:0,98,0:0:0:98,0:3516,0:-316.368,-29.5009,0,-316.368,-29.5009,-316.368	1/1:19:0,18,0:0:0:18,0:640,0:-57.5697,-5.41854,0,-57.5697,-5.41854,-57.5697	1/2:158:0,52,106:0:0:52,106:1872,3761:-459.519,-306.771,-291.118,-153.106,0,-121.196	1/1:55:0,51,4:0:0:51,4:1816,144:-163.36,-15.3525,0,-151.61,-3.24303,-150.406	1/1:26:0,26,0:0:0:26,0:932,0:-84.141,-7.82678,0,-84.141,-7.82678,-84.141	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:130:0,130,0:0:0:130,0:4676,0:-420.999,-39.1339,0,-420.999,-39.1339,-420.999	1/1:157:0,157,0:0:0:157,0:5619,0:-505.559,-47.2617,0,-505.559,-47.2617,-505.559	1/2:18:0,13,5:0:0:13,5:468,174:-52.6912,-14.4961,-10.5827,-38.5463,0,-37.0411	.:.:.:.:.:.:.:.	1/2:57:0,26,31:0:0:26,31:932,1103:-166.264,-90.2492,-82.4224,-76.3721,0,-67.0401	1/2:12:0,6,6:0:0:6,6:216,216:-35.6088,-17.9843,-16.1782,-17.9843,0,-16.1782	1/2:78:0,34,44:0:0:34,44:1216,1575:-227.95,-128.796,-118.561,-99.5115,0,-86.2662	1/2:26:0,11,15:0:0:11,15:396,531:-75.9134,-43.5992,-40.2879,-32.6714,0,-28.156	1/1:29:0,29,0:0:0:29,0:1036,0:-93.5539,-8.72987,0,-93.5539,-8.72987,-93.5539	1/2:39:0,15,24:0:0:15,24:536,853:-113.569,-69.866,-65.3506,-44.0594,0,-36.8346	1/1:60:0,60,0:0:0:60,0:2156,0:-194.307,-18.0618,0,-194.307,-18.0618,-194.307	1/1:211:0,210,0:0:0:210,0:7510,0:-675.592,-63.2163,0,-675.592,-63.2163,-675.592	1/1:85:0,85,0:0:0:85,0:3040,0:-273.83,-25.5876,0,-273.83,-25.5876,-273.83	1/2:69:0,30,39:0:0:30,39:1072,1375:-199.714,-112.308,-103.277,-87.7616,0,-76.0214	1/1:76:0,73,0:0:0:73,0:2603,0:-234.159,-21.9752,0,-234.159,-21.9752,-234.159	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:88:0,35,53:0:0:35,53:1252,1896:-257.055,-154.964,-144.428,-102.449,0,-86.4944	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	.:.:.:.:.:.:.:.	1/2:66:0,29,36:0:0:29,36:1036,1293:-190.06,-105.593,-96.863,-84.5802,0,-73.7431	1/1:31:0,31,0:0:0:31,0:1108,0:-100.031,-9.33193,0,-100.031,-9.33193,-100.031	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:20:0,7,13:0:0:7,13:252,453:-57.7533,-37.1873,-35.0801,-20.9217,0,-17.0084	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.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chr03	2785012	.	G	T	112487	PASS	AB=0.441849;ABP=123.727;AC=153;AF=0.81383;AN=188;AO=5573;CIGAR=1X;DP=7883;DPB=7883;DPRA=0;EPP=12104.6;EPPR=5019.11;GTI=8;LEN=1;MEANALT=1;MQM=54.7244;MQMR=59.6745;NS=94;NUMALT=1;ODDS=1.16422;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196771;QR=82668;RO=2310;RPL=5573;RPP=12104.6;RPPR=5019.11;RPR=0;RUN=1;SAF=0;SAP=12104.6;SAR=5573;SRF=0;SRP=5019.11;SRR=2310;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:42,14:42:1483:14:477:-26.3577,0,-116.899	0/1:175:112,63:112:4005:63:2194:-144.853,0,-307.832	0/1:122:64,58:64:2300:58:2064:-149.121,0,-170.535	1/1:71:0,71:0:0:71:2528:-227.33,-21.3731,0	1/1:130:0,130:0:0:130:4537:-406.69,-39.1339,0	1/1:51:0,51:0:0:51:1786:-160.654,-15.3525,0	1/1:44:0,44:0:0:44:1557:-140.267,-13.2453,0	0/1:184:107,77:107:3828:77:2699:-187.235,0,-289.302	1/1:77:1,76:1:36:76:2681:-237.674,-19.581,0	1/1:41:0,41:0:0:41:1429:-127.519,-12.3422,0	1/1:21:0,21:0:0:21:756:-68.2299,-6.32163,0	0/1:70:42,28:42:1504:28:1004:-69.4043,0,-114.563	1/1:37:0,37:0:0:37:1313:-118.351,-11.1381,0	1/1:30:0,30:0:0:30:1076:-96.8695,-9.0309,0	1/1:49:0,49:0:0:49:1764:-158.927,-14.7505,0	1/1:12:0,12:0:0:12:432:-38.4125,-3.61236,0	1/1:31:0,31:0:0:31:1116:-100.539,-9.33193,0	1/1:36:0,36:0:0:36:1284:-114.563,-10.8371,0	1/1:16:0,16:0:0:16:571:-51.5324,-4.81648,0	1/1:52:0,52:0:0:52:1856:-166.714,-15.6536,0	1/1:94:0,94:0:0:94:3283:-294.661,-28.2968,0	0/1:198:120,78:120:4296:78:2753:-188.182,0,-327.202	1/1:36:0,36:0:0:36:1269:-114.288,-10.8371,0	1/1:126:0,126:0:0:126:4359:-391.9,-37.9298,0	0/1:124:45,79:45:1612:79:2805:-214.702,0,-107.899	0/1:279:228,51:228:8152:51:1812:-78.8878,0,-648.728	1/1:141:1,140:1:36:140:4931:-438.503,-38.847,0	1/1:16:0,16:0:0:16:572:-51.6165,-4.81648,0	0/1:274:164,110:164:5849:110:3870:-265.735,0,-444.033	1/1:132:7,125:7:248:125:4404:-372.614,-17.0718,0	1/1:78:0,78:0:0:78:2754:-247.006,-23.4803,0	0/1:43:10,33:10:352:33:1176:-92.7541,0,-18.9431	1/1:34:0,34:0:0:34:1171:-105.532,-10.235,0	1/1:81:0,81:0:0:81:2866:-257.386,-24.3834,0	1/1:93:0,93:0:0:93:3297:-296.436,-27.9958,0	0/1:17:2,15:2:72:15:536:-43.4089,0,-1.71921	1/1:71:0,71:0:0:71:2536:-228.239,-21.3731,0	1/1:144:1,143:1:36:143:5039:-448.416,-39.75,0	0/1:51:33,18:33:1184:18:629:-41.3998,0,-91.3996	1/1:85:0,85:0:0:85:2997:-268.617,-25.5876,0	0/1:102:60,42:60:2152:42:1462:-100.991,0,-163.218	0/1:26:16,10:16:576:10:360:-24.8711,0,-44.3482	0/1:178:99,79:99:3552:79:2782:-196.193,0,-265.597	0/1:94:45,49:45:1616:49:1748:-129.082,0,-117.429	1/1:38:0,38:0:0:38:1364:-122.962,-11.4391,0	0/1:153:92,61:92:3296:61:2153:-146.711,0,-250.631	1/1:73:0,73:0:0:73:2529:-227.069,-21.9752,0	1/1:78:0,78:0:0:78:2757:-247.549,-23.4803,0	1/1:70:0,70:0:0:70:2458:-221.148,-21.0721,0	0/1:164:70,94:70:2516:94:3326:-249.866,0,-177.313	1/1:27:0,27:0:0:27:948:-85.6134,-8.12781,0	1/1:96:0,96:0:0:96:3343:-300.58,-28.8989,0	0/1:120:61,59:61:2192:59:2058:-149.091,0,-161.355	1/1:10:0,10:0:0:10:356:-32.3698,-3.0103,0	1/1:74:0,74:0:0:74:2640:-237.362,-22.2762,0	0/1:179:75,104:75:2670:104:3642:-273.024,0,-186.653	1/1:15:0,15:0:0:15:513:-46.4465,-4.51545,0	0/1:29:5,24:5:180:24:848:-67.8887,0,-7.82219	0/1:27:17,10:17:612:10:352:-23.8793,0,-47.2856	1/1:27:1,26:1:36:26:886:-76.2972,-4.52954,0	1/1:59:1,58:1:36:58:2076:-183.209,-14.1625,0	1/1:33:0,33:0:0:33:1176:-105.9,-9.93399,0	0/1:298:113,185:113:4029:185:6562:-500.126,0,-273.086	1/1:156:0,156:0:0:156:5479:-491.948,-46.9607,0	0/1:106:44,62:44:1580:62:2212:-166.829,0,-110.578	1/1:54:0,54:0:0:54:1871:-168.402,-16.2556,0	1/1:161:2,159:2:72:159:5611:-497.47,-41.6291,0	0/1:188:113,75:113:4029:75:2680:-184.539,0,-306.176	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	1/1:41:2,39:2:68:39:1396:-119.146,-5.88452,0	0/1:101:65,36:65:2336:36:1292:-85.9268,0,-180.086	1/1:9:0,9:0:0:9:324:-29.4846,-2.70927,0	1/1:31:0,31:0:0:31:1085:-97.6913,-9.33193,0	1/1:51:0,51:0:0:51:1812:-163.19,-15.3525,0	1/1:55:0,55:0:0:55:1910:-171.086,-16.5567,0	1/1:132:0,132:0:0:132:4661:-419.242,-39.736,0	0/1:131:56,75:56:2008:75:2673:-200.951,0,-141.547	1/1:19:0,19:0:0:19:684:-61.7187,-5.71957,0	0/1:23:13,10:13:460:10:356:-25.4258,0,-34.8117	1/1:58:0,58:0:0:58:2040:-182.851,-17.4597,0	1/1:134:0,134:0:0:134:4761:-427.693,-40.338,0	1/1:258:0,258:0:0:258:9078:-815.274,-77.6657,0	0/1:81:56,25:56:2012:25:896:-56.1363,0,-156.89	0/1:68:41,27:41:1476:27:968:-66.8169,0,-112.664	0/1:127:77,50:77:2755:50:1788:-122.588,0,-209.951	0/1:145:79,66:79:2828:66:2345:-167.355,0,-211.083	1/1:21:0,21:0:0:21:744:-67.2199,-6.32163,0	1/1:25:0,25:0:0:25:892:-80.3141,-7.52575,0	1/1:17:0,17:0:0:17:604:-54.5201,-5.11751,0	0/1:19:13,6:13:468:6:212:-13.6805,0,-36.7354	0/1:80:51,29:51:1820:29:1017:-67.5117,0,-139.998	0/1:78:64,14:64:2300:14:504:-22.1848,0,-183.778	1/1:65:0,65:0:0:65:2324:-209.053,-19.567,0	1/1:53:0,53:0:0:53:1886:-169.85,-15.9546,0
chr03	2795566	.	T	C	1967.14	PASS	AB=0.329435;ABP=132.643;AC=30;AF=0.159574;AN=188;AO=174;CIGAR=1X;DP=1908;DPB=1908;DPRA=1.00882;EPP=380.846;EPPR=3740.16;GTI=9;LEN=1;MEANALT=1;MQM=59.7874;MQMR=59.9429;NS=94;NUMALT=1;ODDS=0.0411218;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6221;QR=62115;RO=1733;RPL=0;RPP=380.846;RPPR=3740.16;RPR=174;RUN=1;SAF=174;SAP=380.846;SAR=0;SRF=1733;SRP=3766.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:8,4:8:288:4:140:-9.31417,0,-22.655	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:14:13,1:13:468:1:36:0,-0.616145,-38.8614	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:30:26,4:26:921:4:144:-4.28272,0,-74.1743	0/0:14:14,0:14:474:0:0:0,-4.21442,-42.9797	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5268	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/1:16:12,4:12:432:4:144:-8.49474,0,-34.4047	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:29:24,5:24:849:5:180:-7.82127,0,-67.998	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:12:5,7:5:180:7:244:-18.6861,0,-12.9397	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:11:10,1:10:347:1:36:-0.286945,0,-28.2523	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/0:97:95,2:95:3416:2:72:0,-22.3632,-300.816	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.153	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:29:26,3:26:936:3:108:-1.3453,0,-75.8296	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:8:7,1:7:243:1:36:-1.18493,0,-19.7992	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:14:10,4:10:360:4:136:-8.36112,0,-28.5299	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1465	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:34:11,23:11:396:23:828:-64.6045,0,-25.7477	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:29:23,6:23:828:6:216:-11.0606,0,-66.1142	0/0:14:13,0:13:468:0:0:0,-3.91339,-42.239	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:30:25,5:25:896:5:169:-6.51044,0,-71.9295	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9947	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.057	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:47:46,1:46:1652:1:36:0,-10.5501,-145.37	0/0:23:22,1:22:792:1:36:0,-3.32541,-68.0074	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.172	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9136	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	0/1:13:9,4:9:320:4:140:-9.03119,0,-25.2271	0/1:35:22,13:22:792:13:464:-31.5615,0,-61.0696	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:17:14,3:14:504:3:108:-4.95766,0,-40.5806	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.447	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.739
chr03	2796688	.	T	C	79285.4	PASS	AB=0.463217;ABP=26.1738;AC=149;AF=0.801075;AN=186;AO=3690;CIGAR=1X;DP=4765;DPB=4765;DPRA=11.6142;EPP=7963.71;EPPR=2311.32;GTI=1;LEN=1;MEANALT=1.04396;MQM=59.9748;MQMR=59.9776;NS=93;NUMALT=1;ODDS=0.466443;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131921;QR=38440;RO=1071;RPL=3684;RPP=7963.71;RPPR=2311.32;RPR=6;RUN=1;SAF=0;SAP=8015.74;SAR=3690;SRF=0;SRP=2328.66;SRR=1071;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:40:24,16:24:864:16:576:-40.1338,0,-66.0414	0/1:39:19,20:19:684:20:716:-53.0275,0,-50.1502	1/1:102:0,101:0:0:101:3628:-326.364,-30.404,0	1/1:22:0,22:0:0:22:785:-70.9737,-6.62266,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:58:19,39:19:684:39:1394:-108.299,0,-44.4306	1/1:11:0,11:0:0:11:370:-33.6221,-3.31133,0	1/1:75:0,75:0:0:75:2688:-242.162,-22.5773,0	1/1:56:0,55:0:0:55:1953:-175.684,-16.5567,0	0/1:54:29,25:29:1025:25:889:-64.0732,0,-76.3051	1/1:80:0,80:0:0:80:2863:-257.907,-24.0824,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:84:0,84:0:0:84:2990:-269.328,-25.2865,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:60:0,60:0:0:60:2120:-191.069,-18.0618,0	0/1:50:35,15:35:1260:15:540:-33.885,0,-98.654	1/1:20:0,20:0:0:20:694:-62.7787,-6.0206,0	1/1:42:0,42:0:0:42:1497:-135.023,-12.6433,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:132:72,60:72:2584:60:2152:-154.211,0,-193.044	1/1:37:1,36:1:36:36:1266:-110.641,-7.53984,0	1/1:38:0,38:0:0:38:1368:-123.42,-11.4391,0	0/1:86:67,19:67:2404:19:680:-35.6406,0,-190.728	1/1:57:0,57:0:0:57:2033:-183.241,-17.1587,0	1/1:46:0,46:0:0:46:1637:-147.617,-13.8474,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:202:0,202:0:0:202:7256:-653.089,-60.8081,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:49:24,25:24:849:25:896:-66.2056,0,-61.9774	.:.:.:.:.:.:.:.	0/1:59:30,29:30:1080:29:1021:-74.4395,0,-79.7525	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9624	0/1:22:8,14:8:284:14:504:-39.0754,0,-19.2807	0/1:75:39,36:39:1400:36:1277:-92.6555,0,-103.722	1/1:73:0,73:0:0:73:2591:-233.437,-21.9752,0	0/1:29:15,14:15:536:14:504:-36.9682,0,-39.8378	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:98:56,42:56:2012:42:1512:-106.874,0,-151.852	1/1:43:0,43:0:0:43:1533:-138.261,-12.9443,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:35:16,19:16:576:19:680:-50.9931,0,-41.6389	1/1:9:0,8:0:0:8:288:-25.9076,-2.40824,0	1/1:17:0,17:0:0:17:589:-53.3333,-5.11751,0	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.2574	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:15:5,10:5:180:10:354:-27.684,0,-12.0366	1/1:29:0,29:0:0:29:1029:-92.4925,-8.72987,0	1/1:120:1,119:1:36:119:4257:-379.709,-32.5253,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:140:74,66:74:2660:66:2364:-170.874,0,-197.501	1/1:81:0,81:0:0:81:2885:-259.885,-24.3834,0	0/1:58:22,36:22:773:36:1296:-99.4842,0,-52.4297	1/1:28:0,27:0:0:27:972:-87.4381,-8.12781,0	1/1:53:0,53:0:0:53:1881:-169.565,-15.9546,0	0/1:35:22,13:22:788:13:468:-31.9236,0,-60.7087	1/1:31:1,30:1:36:30:1066:-92.6518,-5.73366,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:116:67,49:67:2412:49:1760:-123.764,0,-182.416	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:43:0,43:0:0:43:1518:-136.909,-12.9443,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:111:0,111:0:0:111:3988:-359.109,-33.4143,0	0/1:43:28,15:28:1004:15:532:-35.2688,0,-77.7316	1/1:56:0,56:0:0:56:1989:-179.281,-16.8577,0	0/1:11:7,4:7:252:4:133:-8.98626,0,-19.7176	1/1:39:0,39:0:0:39:1393:-125.669,-11.7402,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:63:0,63:0:0:63:2257:-203.392,-18.9649,0	0/1:129:65,64:65:2340:64:2289:-167.438,0,-172.026	0/1:63:20,43:20:720:43:1544:-120.288,0,-46.1639	0/1:86:49,37:49:1749:37:1317:-92.9421,0,-131.804	0/1:167:84,83:84:3024:83:2984:-218.491,0,-222.117	1/1:27:0,27:0:0:27:953:-86.0833,-8.12781,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:68:0,68:0:0:68:2429:-218.864,-20.47,0	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/1:86:50,36:50:1796:36:1288:-90.335,0,-136.034	0/1:77:50,27:50:1800:27:972:-64.6186,0,-139.103	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:105:1,104:1:36:104:3729:-332.211,-28.0099,0
chr03	3150302	.	G	A	165388	PASS	AB=0.474839;ABP=21.8052;AC=145;AF=0.788043;AN=184;AO=7516;CIGAR=1X;DP=9342;DPB=9342;DPRA=39.3287;EPP=15935.3;EPPR=3896.69;GTI=1;LEN=1;MEANALT=1.05618;MQM=59.7936;MQMR=59.642;NS=92;NUMALT=1;ODDS=0.294067;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=269632;QR=65118;RO=1821;RPL=45;RPP=15935.3;RPPR=3896.69;RPR=7471;RUN=1;SAF=7516;SAP=16323.8;SAR=0;SRF=1821;SRP=3957.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:5,16:5:180:16:576:-45.8534,0,-10.2304	0/1:187:85,102:85:3036:102:3637:-271.242,0,-217.153	0/1:95:41,54:41:1468:54:1940:-146.278,0,-103.779	1/1:187:1,186:1:36:186:6641:-594.173,-52.6969,0	1/1:60:1,59:1:36:59:2108:-186.391,-14.4635,0	1/1:90:0,90:0:0:90:3236:-291.13,-27.0927,0	1/1:173:0,173:0:0:173:6208:-558.814,-52.0782,0	0/1:167:84,83:84:3008:83:2984:-218.519,0,-220.655	1/1:146:0,146:0:0:146:5224:-470.297,-43.9504,0	1/1:116:0,116:0:0:116:4155:-373.022,-34.9195,0	1/1:39:0,39:0:0:39:1391:-125.402,-11.7402,0	0/1:87:43,44:43:1536:44:1578:-116.122,0,-112.313	1/1:89:1,88:1:36:88:3168:-280.808,-23.1934,0	1/1:73:0,73:0:0:73:2624:-236.404,-21.9752,0	1/1:95:0,95:0:0:95:3416:-307.426,-28.5979,0	1/1:65:0,65:0:0:65:2336:-209.722,-19.567,0	1/1:90:0,90:0:0:90:3240:-290.257,-27.0927,0	1/1:72:0,72:0:0:72:2592:-232.588,-21.6742,0	1/1:24:0,24:0:0:24:864:-76.7157,-7.22472,0	1/1:153:0,153:0:0:153:5481:-493.414,-46.0576,0	1/1:159:2,157:2:72:157:5636:-500.581,-41.0861,0	0/1:120:85,35:85:3028:35:1256:-76.9511,0,-236.623	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	1/1:158:0,158:0:0:158:5676:-510.957,-47.5627,0	0/1:56:27,29:27:968:29:1040:-77.0567,0,-70.5797	0/1:255:141,114:141:5051:114:4096:-291.971,0,-377.964	1/1:274:1,273:1:36:273:9789:-877.12,-78.8839,0	1/1:35:1,34:1:36:34:1224:-106.44,-6.93778,0	0/1:368:196,172:196:7006:172:6153:-442.807,0,-519.269	1/1:114:8,106:8:279:106:3800:-316.527,-8.87454,0	1/1:114:0,114:0:0:114:4090:-368.283,-34.3174,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.4614	1/1:247:0,247:0:0:247:8857:-795.657,-74.3544,0	1/1:174:0,174:0:0:174:6239:-559.622,-52.3792,0	0/1:48:26,22:26:923:22:792:-57.1562,0,-68.9373	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:145:81,64:81:2904:64:2292:-162.892,0,-217.807	0/1:30:14,16:14:504:16:576:-40.8003,0,-36.6394	0/1:152:75,76:75:2684:76:2728:-199.948,0,-195.849	0/1:89:39,50:39:1387:50:1800:-135.491,0,-98.2978	1/1:85:0,85:0:0:85:3056:-275.266,-25.5876,0	0/1:46:24,22:24:856:22:788:-57.3974,0,-63.5128	1/1:171:0,170:0:0:170:6112:-549.5,-51.1751,0	1/1:145:0,145:0:0:145:5197:-467.485,-43.6494,0	1/1:133:0,133:0:0:133:4780:-430.264,-40.037,0	0/1:171:96,75:96:3429:75:2684:-190.292,0,-257.346	1/1:124:0,124:0:0:124:4440:-399.317,-37.3277,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:119:62,57:62:2228:57:2052:-149.129,0,-164.961	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	.:.:.:.:.:.:.:.	0/1:141:83,58:83:2972:58:2084:-145.385,0,-225.225	0/1:53:32,21:32:1148:21:752:-52.0517,0,-87.6752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3112	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:93:1,92:1:36:92:3312:-294.329,-24.3975,0	.:.:.:.:.:.:.:.	0/1:131:80,51:80:2860:51:1832:-125.726,0,-218.117	1/1:197:0,197:0:0:197:7080:-635.698,-59.3029,0	0/1:65:21,44:21:747:44:1568:-121.845,0,-47.9836	1/1:87:0,87:0:0:87:3105:-279.221,-26.1896,0	1/1:143:0,143:0:0:143:5135:-462.29,-43.0473,0	0/1:80:56,24:56:2008:24:856:-53.2787,0,-156.905	1/1:25:1,24:1:36:24:864:-74.4843,-3.92748,0	1/1:102:0,102:0:0:102:3638:-327.621,-30.7051,0	0/1:84:34,50:34:1224:50:1796:-136.569,0,-85.176	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:156:0,156:0:0:156:5600:-504.117,-46.9607,0	1/1:126:0,126:0:0:126:4536:-407.549,-37.9298,0	1/1:146:1,145:1:36:145:5184:-463.1,-40.3521,0	1/1:305:1,303:1:36:303:10884:-975.486,-88.2747,0	0/1:73:42,31:42:1495:31:1103:-77.6046,0,-112.822	1/1:182:0,182:0:0:182:6548:-589.398,-54.7875,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:127:0,126:0:0:126:4520:-406.607,-37.9298,0	1/1:110:0,110:0:0:110:3937:-354.517,-33.1133,0	1/1:121:0,121:0:0:121:4329:-389.784,-36.4246,0	0/1:101:46,54:46:1643:54:1940:-144.043,0,-117.609	0/1:93:47,46:47:1684:46:1652:-120.973,0,-123.842	0/1:135:65,70:65:2332:70:2512:-185.6,0,-169.481	0/1:178:80,98:80:2844:98:3520:-263.425,0,-202.6	1/1:36:1,35:1:36:35:1260:-109.479,-7.23881,0	1/1:98:0,98:0:0:98:3524:-317.368,-29.5009,0	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	0/1:15:12,3:12:428:3:108:-5.55972,0,-34.3341	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7595	0/1:66:47,19:47:1674:19:684:-42.0223,0,-131.075	1/1:54:0,54:0:0:54:1944:-173.981,-16.2556,0	1/1:113:0,113:0:0:113:4049:-364.225,-34.0164,0
chr03	3150312	.	A	G	74121.8	PASS	AB=0.532021;ABP=56.8278;AC=37;AF=0.198925;AN=186;AO=3238;CIGAR=1X;DP=16277;DPB=16277;DPRA=1.2437;EPP=7034.24;EPPR=28221.4;GTI=1;LEN=1;MEANALT=1;MQM=59.7644;MQMR=59.8564;NS=93;NUMALT=1;ODDS=3.84451;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115001;QR=466328;RO=13039;RPL=1834;RPP=127.008;RPPR=617.571;RPR=1404;RUN=1;SAF=1834;SAP=127.008;SAR=1404;SRF=7491;SRP=631.728;SRR=5548;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:16,5:16:576:5:180:-10.2304,0,-45.8534	0/1:187:103,84:103:3682:84:2961:-210.399,0,-275.289	0/1:95:53,42:53:1878:42:1512:-107.733,0,-140.7	0/0:631:630,1:630:22556:1:32:0,-186.752,-2026.25	0/0:59:58,1:58:2088:1:36:0,-14.1625,-184.592	0/0:88:88,0:88:3146:0:0:0,-26.4906,-283.047	0/0:249:248,1:248:8883:1:36:0,-71.3582,-795.854	0/1:164:82,82:82:2940:82:2927:-214.284,0,-215.465	0/0:147:147,0:147:5280:0:0:0,-44.2514,-475.334	0/0:194:194,0:194:6948:0:0:0,-58.3998,-624.271	0/0:94:94,0:94:3351:0:0:0,-28.2968,-301.721	0/1:87:42,45:42:1508:45:1549:-113.465,0,-109.825	0/0:88:88,0:88:3147:0:0:0,-26.4906,-282.518	0/0:73:73,0:73:2589:0:0:0,-21.9752,-233.255	0/0:185:185,0:185:6617:0:0:0,-55.6905,-595.378	0/0:65:65,0:65:2309:0:0:0,-19.5669,-207.292	0/0:90:90,0:90:3184:0:0:0,-27.0927,-285.221	0/0:73:73,0:73:2573:0:0:0,-21.9752,-230.882	0/0:23:23,0:23:824:0:0:0,-6.92369,-73.1162	0/0:531:531,0:531:19041:0:0:0,-159.847,-1713.19	0/0:160:159,1:159:5703:1:36:0,-44.5665,-509.732	0/1:357:100,257:100:3579:257:9130:-714.203,0,-214.573	0/0:313:313,0:313:11228:0:0:0,-94.2224,-1009.38	0/0:157:157,0:157:5601:0:0:0,-47.2617,-504.213	0/1:60:32,28:32:1143:28:1008:-72.9736,0,-85.1169	0/1:584:274,310:274:9827:310:11043:-816.417,0,-708.458	0/0:277:277,0:277:9899:0:0:0,-83.3853,-890.618	0/0:36:35,1:35:1260:1:32:0,-7.63777,-110.078	0/1:787:402,385:402:14367:385:13697:-995.052,0,-1055.57	0/0:114:106,8:106:3776:8:273:0,-9.42189,-314.915	0/0:362:362,0:362:12959:0:0:0,-108.973,-1166.12	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:2,4:2:72:4:144:-11.4614,0,-5.03054	0/0:486:485,1:485:17312:1:36:0,-142.702,-1552.53	0/0:172:172,0:172:6143:0:0:0,-51.7772,-550.99	0/1:49:23,26:23:824:26:920:-68.3666,0,-59.7328	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:143:62,81:62:2211:81:2856:-214.152,0,-156.207	0/1:30:16,14:16:572:14:481:-34.5644,0,-40.4388	0/1:154:76,78:76:2723:78:2777:-203.691,0,-198.954	0/1:165:89,76:89:3184:76:2659:-189.845,0,-237.114	0/0:156:156,0:156:5584:0:0:0,-46.9607,-502.052	0/1:201:103,98:103:3679:98:3493:-254.074,0,-270.794	0/0:169:169,0:169:6025:0:0:0,-50.8741,-542.038	0/0:394:394,0:394:14102:0:0:0,-118.606,-1268.51	0/0:279:276,3:276:9900:3:104:0,-74.2846,-881.14	0/1:453:228,225:228:8148:225:8059:-588.961,0,-596.934	0/0:266:266,0:266:9505:0:0:0,-80.074,-854.952	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:119:56,63:56:1984:63:2256:-167.48,0,-143.009	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	.:.:.:.:.:.:.:.	0/1:140:57,83:57:2048:83:2921:-220.937,0,-142.447	0/1:132:62,70:62:2220:70:2495:-185.067,0,-160.328	0/1:21:11,10:11:392:10:356:-26.0596,0,-29.2984	0/1:14:5,9:5:180:9:315:-24.4704,0,-12.3376	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/0:200:199,1:199:7091:1:36:0,-56.6077,-634.285	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:434:192,242:192:6883:242:8569:-640.477,0,-488.263	0/0:474:472,2:472:16872:2:72:0,-135.851,-1509.73	0/1:68:45,23:45:1595:23:820:-53.624,0,-123.369	0/0:299:299,0:299:10700:0:0:0,-90.008,-962.448	0/0:340:340,0:340:12176:0:0:0,-102.35,-1095.6	0/1:285:92,193:92:3296:193:6877:-533.196,0,-211.029	0/0:26:25,1:25:900:1:36:0,-4.2285,-77.7227	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.534	0/1:143:72,71:72:2571:71:2507:-182.83,0,-188.525	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:156:156,0:156:5576:0:0:0,-46.9607,-501.959	0/0:125:125,0:125:4475:0:0:0,-37.6287,-402.064	0/0:145:145,0:145:5166:0:0:0,-43.6493,-465.082	0/0:523:522,1:522:18706:1:36:0,-153.84,-1679.14	0/1:76:31,45:31:1103:45:1573:-118.802,0,-76.7015	0/0:180:180,0:180:6456:0:0:0,-54.1854,-581.125	0/1:8:2,6:2:63:6:207:-16.5587,0,-3.57491	0/0:126:126,0:126:4487:0:0:0,-37.9298,-403.998	0/0:108:108,0:108:3855:0:0:0,-32.5112,-347.141	0/0:432:432,0:432:15472:0:0:0,-130.045,-1392.18	0/1:174:77,97:77:2747:97:3449:-258.154,0,-194.723	0/1:168:83,85:83:2949:85:3029:-222.26,0,-215.07	0/1:193:97,96:97:3459:96:3399:-248.006,0,-253.331	0/1:310:165,145:165:5857:145:5128:-368.336,0,-433.886	0/0:36:36,0:36:1292:0:0:0,-10.8371,-115.956	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.618	0/1:15:3,12:3:108:12:432:-34.6965,0,-5.55972	0/1:34:18,16:18:640:16:576:-41.9353,0,-47.6943	0/1:166:57,109:57:2048:109:3895:-300.771,0,-134.621	0/0:354:354,0:354:12684:0:0:0,-106.565,-1140.11	0/0:242:242,0:242:8638:0:0:0,-72.8493,-776.791
chr03	3150351	.	T	C	226872	PASS	AB=0.462805;ABP=65.0399;AC=152;AF=0.808511;AN=188;AO=10396;CIGAR=1X;DP=13187;DPB=13187;DPRA=0;EPP=22197.1;EPPR=6005.07;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9116;MQMR=59.9214;NS=94;NUMALT=1;ODDS=1.07326;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=371999;QR=99643;RO=2788;RPL=10352;RPP=22197.1;RPPR=6005.07;RPR=44;RUN=1;SAF=0;SAP=22577.6;SAR=10396;SRF=0;SRP=6057.08;SRR=2788;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:49,26:49:1760:26:936:-61.9822,0,-136.071	0/1:124:82,42:82:2940:42:1504:-98.3269,0,-227.505	0/1:378:217,161:217:7776:161:5766:-405.238,0,-586.08	1/1:451:0,451:0:0:451:16155:-1453.62,-135.765,0	1/1:116:0,116:0:0:116:4147:-373.412,-34.9195,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:76:1,75:1:36:75:2692:-238.926,-19.28,0	0/1:185:93,92:93:3329:92:3277:-239.459,0,-244.135	1/1:151:0,151:0:0:151:5391:-485.004,-45.4555,0	1/1:79:0,79:0:0:79:2844:-256.193,-23.7814,0	1/1:53:0,53:0:0:53:1899:-171.187,-15.9546,0	0/1:122:62,60:62:2224:60:2152:-157.213,0,-163.681	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:56:0,56:0:0:56:2003:-180.543,-16.8577,0	1/1:91:0,91:0:0:91:3261:-293.707,-27.3937,0	1/1:86:0,86:0:0:86:3066:-274.972,-25.8886,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:46:0,46:0:0:46:1616:-145.651,-13.8474,0	1/1:381:0,381:0:0:381:13674:-1230.43,-114.692,0	1/1:224:0,224:0:0:224:8005:-720.465,-67.4307,0	0/1:238:172,66:172:6153:66:2357:-140.741,0,-482.222	1/1:226:0,226:0:0:226:8115:-729.344,-68.0328,0	1/1:98:0,98:0:0:98:3505:-315.598,-29.5009,0	0/1:119:56,63:56:1989:63:2234:-165.498,0,-143.455	0/1:336:174,162:174:6221:162:5815:-422.307,0,-457.294	1/1:486:1,485:1:36:485:17368:-1559.02,-142.702,0	1/1:43:0,43:0:0:43:1543:-139.163,-12.9443,0	0/1:418:187,231:187:6705:231:8290:-620.27,0,-477.687	1/1:198:7,191:7:252:191:6828:-591.545,-36.5889,0	1/1:249:0,249:0:0:249:8897:-800.082,-74.9565,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:24:0,24:0:0:24:855:-77.2512,-7.22472,0	1/1:9:0,9:0:0:9:324:-29.4976,-2.70927,0	1/1:10:0,10:0:0:10:360:-32.7434,-3.0103,0	0/1:20:16,4:16:576:4:144:-7.29302,0,-46.1544	1/1:241:1,240:1:36:240:8577:-768.136,-68.95,0	1/1:157:0,157:0:0:157:5617:-505.46,-47.2617,0	0/1:56:31,25:31:1104:25:877:-62.3875,0,-82.813	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:252:125,127:125:4464:127:4560:-334.7,0,-326.067	0/1:50:29,21:29:1044:21:756:-53.3157,0,-79.2233	0/1:226:120,106:120:4288:106:3796:-273.796,0,-318.066	0/1:80:39,41:39:1404:41:1471:-108.604,0,-102.572	1/1:73:0,73:0:0:73:2594:-233.599,-21.9752,0	0/1:156:77,79:77:2764:79:2828:-207.797,0,-201.995	1/1:207:0,207:0:0:207:7424:-667.958,-62.3132,0	1/1:253:0,253:0:0:253:9064:-815.685,-76.1606,0	1/1:150:0,150:0:0:150:5359:-482.437,-45.1545,0	0/1:294:138,156:138:4918:156:5600:-415.618,0,-354.136	1/1:143:0,143:0:0:143:5132:-462.02,-43.0473,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:207:100,107:100:3562:107:3818:-281.501,0,-258.472	1/1:91:0,91:0:0:91:3268:-294.334,-27.3937,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:268:144,124:144:5142:124:4441:-319.184,0,-382.094	0/1:78:39,39:39:1396:39:1392:-102.099,0,-102.459	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	0/1:9:4,5:4:129:5:180:-13.8428,0,-9.21839	1/1:112:0,112:0:0:112:4005:-360.638,-33.7154,0	1/1:111:0,111:0:0:111:3984:-358.749,-33.4143,0	1/1:3:0,3:0:0:3:107:-9.98217,-0.90309,0	0/1:306:168,138:168:6006:138:4943:-352.904,0,-448.527	1/1:276:2,274:2:72:274:9763:-871.779,-76.2476,0	0/1:62:26,36:26:917:36:1275:-96.3884,0,-64.1807	1/1:213:0,213:0:0:213:7632:-686.916,-64.1194,0	1/1:200:0,200:0:0:200:7156:-644.054,-60.206,0	0/1:203:134,69:134:4789:69:2467:-161.169,0,-370.05	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	0/1:57:33,24:33:1188:24:856:-60.2024,0,-90.0699	1/1:30:0,30:0:0:30:1076:-97.1413,-9.0309,0	1/1:138:0,138:0:0:138:4892:-440.431,-41.5421,0	1/1:121:0,121:0:0:121:4301:-386.482,-36.4246,0	1/1:332:0,332:0:0:332:11815:-1062.49,-99.942,0	1/1:221:0,220:0:0:220:7883:-709.107,-66.2266,0	0/1:199:116,83:116:4148:83:2976:-208.164,0,-313.591	1/1:176:1,175:1:36:175:6284:-562.053,-49.383,0	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	1/1:176:2,174:2:72:174:6248:-555.576,-46.1446,0	1/1:175:0,174:0:0:174:6179:-555.994,-52.3792,0	1/1:316:0,315:0:0:315:11225:-1009.77,-94.8245,0	0/1:73:49,24:49:1730:24:864:-56.1074,0,-134.005	0/1:76:38,38:38:1360:38:1368:-100.543,0,-99.8223	0/1:58:29,29:29:1044:29:1032:-75.7337,0,-76.8151	0/1:130:63,67:63:2260:67:2405:-177.525,0,-164.529	1/1:20:0,20:0:0:20:720:-65.1206,-6.0206,0	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	1/1:106:0,106:0:0:106:3799:-342.107,-31.9092,0	0/1:47:28,19:28:993:19:684:-47.7419,0,-75.5341	0/1:118:55,63:55:1976:63:2256:-167.777,0,-142.565	0/1:99:61,38:61:2124:38:1359:-92.8079,0,-161.62	1/1:302:0,302:0:0:302:10844:-975.839,-90.9111,0	1/1:134:0,134:0:0:134:4793:-431.525,-40.338,0
chr03	3150368	.	A	T	49126.4	PASS	AB=0.541371;ABP=80.4484;AC=36;AF=0.191489;AN=188;AO=2835;CIGAR=1X;DP=13240;DPB=13240;DPRA=1.26951;EPP=6159.13;EPPR=22592.8;GTI=2;LEN=1;MEANALT=1.02326;MQM=59.9125;MQMR=59.917;NS=94;NUMALT=1;ODDS=0.826788;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101469;QR=372855;RO=10403;RPL=2835;RPP=6159.13;RPPR=22592.8;RPR=0;RUN=1;SAF=0;SAP=6159.13;SAR=2835;SRF=0;SRP=22592.8;SRR=10403;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:26,48:26:936:48:1724:-133.169,0,-62.2832	0/1:123:41,82:41:1461:82:2944:-228.165,0,-94.7573	0/1:383:163,220:163:5844:220:7893:-595.097,0,-410.468	0/0:455:455,0:455:16279:0:0:0,-136.969,-1464.77	0/0:115:115,0:115:4136:0:0:0,-34.6184,-372.416	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:79:78,1:78:2783:1:32:0,-20.5821,-247.511	0/1:186:92,94:92:3289:94:3372:-247.704,0,-240.233	0/0:149:149,0:149:5337:0:0:0,-44.8535,-479.683	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.487	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.585	0/1:120:58,62:58:2071:62:2228:-164.643,0,-150.528	0/0:77:77,0:77:2759:0:0:0,-23.1793,-248.551	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.935	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.306	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.643	0/0:383:383,0:383:13706:0:0:0,-115.294,-1233.27	0/0:223:223,0:223:7996:0:0:0,-67.1297,-719.647	0/1:242:66,176:66:2361:176:6292:-493.522,0,-139.897	0/0:225:225,0:225:8050:0:0:0,-67.7317,-724.516	0/0:97:97,0:97:3447:0:0:0,-29.1999,-310.388	0/1:121:62,59:62:2228:59:2112:-153.92,0,-164.359	0/1:336:163,173:163:5848:173:6206:-456.784,0,-425.268	0/0:490:489,1:489:17533:1:36:0,-143.906,-1573.77	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/1:419:230,189:230:8260:189:6800:-485.931,0,-617.273	0/0:197:190,7:190:6809:7:252:0,-36.2879,-589.674	0/0:252:252,0:252:9037:0:0:0,-75.8596,-812.282	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.5918	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4976	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4955	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	0/0:242:241,1:241:8651:1:36:0,-69.251,-774.491	0/0:161:161,0:161:5764:0:0:0,-48.4658,-518.732	0/1:56:25,31:25:896:31:1101:-82.5407,0,-64.1027	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:257:129,128:129:4617:128:4569:-334.009,0,-338.322	0/1:50:20,29:20:711:29:1040:-78.8041,0,-49.2056	0/1:224:105,119:105:3772:119:4267:-316.777,0,-272.238	0/1:80:41,39:41:1476:39:1400:-102.212,0,-109.054	0/0:74:73,0:73:2611:0:0:0,-21.9752,-234.251	0/1:156:79,77:79:2832:77:2707:-196.908,0,-208.157	0/0:206:206,0:206:7397:0:0:0,-62.0122,-665.702	0/0:251:251,0:251:9012:0:0:0,-75.5585,-811.052	0/0:148:148,0:148:5297:0:0:0,-44.5524,-476.863	0/1:293:156,137:156:5588:137:4882:-351.317,0,-414.841	0/0:144:144,0:144:5168:0:0:0,-43.3483,-465.259	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:208:106,102:106:3804:102:3652:-266.27,0,-279.943	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.205	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:271:126,145:126:4524:145:5158:-382.718,0,-325.747	0/1:80:38,42:38:1360:42:1500:-111.212,0,-98.6182	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:114:114,0:114:4077:0:0:0,-34.3174,-367.115	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:306:136,170:136:4884:170:6112:-458.062,0,-346.969	0/0:275:273,2:273:9758:2:72:0,-75.9465,-871.327	0/1:64:37,27:37:1328:27:972:-68.532,0,-100.556	0/0:210:210,0:210:7525:0:0:0,-63.2163,-677.286	0/0:200:200,0:200:7165:0:0:0,-60.206,-644.816	0/1:211:70,141:70:2516:141:5018:-388.191,0,-163.088	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:60:25,35:25:887:35:1260:-95.6437,0,-62.0863	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.764	0/0:136:136,0:136:4865:0:0:0,-40.9401,-437.999	0/0:123:123,0:123:4412:0:0:0,-37.0267,-396.466	0/0:333:333,0:333:11893:0:0:0,-100.243,-1068.48	0/0:219:219,0:219:7868:0:0:0,-65.9256,-708.12	0/1:205:85,120:85:3052:120:4277:-323.018,0,-213.189	0/0:176:175,1:175:6276:1:36:0,-49.383,-561.334	0/1:23:12,11:12:432:11:381:-27.6969,0,-32.2975	0/0:177:175,2:175:6292:2:72:0,-46.4456,-559.533	0/0:178:178,0:178:6396:0:0:0,-53.5833,-575.721	0/0:315:315,0:315:11273:0:0:0,-94.8244,-1014.42	0/1:73:24,49:24:864:49:1749:-135.718,0,-56.1074	0/1:79:37,42:37:1319:42:1512:-112.593,0,-95.2298	0/1:60:30,30:30:1076:30:1080:-79.4515,0,-79.0911	0/1:133:67,66:67:2400:66:2372:-173.701,0,-176.22	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.521	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/1:46:18,28:18:648:28:1008:-77.189,0,-44.8045	0/1:117:62,55:62:2228:55:1970:-142.35,0,-165.563	0/1:101:38,63:38:1368:63:2259:-173.169,0,-93.0168	0/0:299:299,0:299:10721:0:0:0,-90.008,-964.788	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874
chr03	3396512	.	G	A	103369	PASS	AB=0.495398;ABP=3.46997;AC=146;AF=0.793478;AN=184;AO=4844;CIGAR=1X;DP=6119;DPB=6119;DPRA=13.5756;EPP=10521.6;EPPR=2769.47;GTI=0;LEN=1;MEANALT=1.01111;MQM=59.6259;MQMR=59.9278;NS=92;NUMALT=1;ODDS=0.181687;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171991;QR=45383;RO=1274;RPL=4838;RPP=10469.6;RPPR=2743.47;RPR=6;RUN=1;SAF=4838;SAP=10469.6;SAR=6;SRF=1271;SRP=2743.47;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:26,22:26:932:22:792:-57.147,0,-69.7494	0/1:59:31,28:31:1103:28:1000:-72.5546,0,-81.819	0/1:82:40,42:40:1413:42:1494:-110.058,0,-102.781	1/1:109:0,109:0:0:109:3872:-348.372,-32.8123,0	1/1:88:0,88:0:0:88:3124:-281.113,-26.4906,0	1/1:29:0,29:0:0:29:1040:-93.9098,-8.72987,0	1/1:65:0,65:0:0:65:2312:-208.316,-19.567,0	0/1:133:66,67:66:2327:67:2365:-173.052,0,-169.648	1/1:59:0,59:0:0:59:2085:-187.897,-17.7608,0	1/1:55:0,55:0:0:55:1972:-177.741,-16.5567,0	1/1:30:0,30:0:0:30:1060:-95.7067,-9.0309,0	0/1:60:31,29:31:1099:29:1032:-75.1317,0,-81.1495	1/1:60:1,59:1:36:59:2091:-184.855,-14.4635,0	1/1:70:0,70:0:0:70:2504:-225.599,-21.0721,0	1/1:46:0,46:0:0:46:1624:-146.44,-13.8474,0	1/1:44:0,44:0:0:44:1540:-138.879,-13.2453,0	1/1:58:0,58:0:0:58:1998:-180.082,-17.4597,0	1/1:46:0,46:0:0:46:1587:-143.111,-13.8474,0	1/1:16:0,16:0:0:16:564:-51.0811,-4.81648,0	1/1:95:0,95:0:0:95:3368:-303.269,-28.5979,0	1/1:91:0,91:0:0:91:3236:-291.448,-27.3937,0	0/1:147:83,64:83:2972:64:2276:-160.842,0,-223.453	1/1:50:1,48:1:36:48:1712:-150.709,-11.512,0	1/1:81:0,81:0:0:81:2892:-260.501,-24.3834,0	0/1:25:14,11:14:491:11:392:-28.0897,0,-36.8909	0/1:286:127,159:127:4517:159:5617:-419.469,0,-320.601	1/1:103:0,103:0:0:103:3672:-330.424,-31.0061,0	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	0/1:130:56,74:56:2003:74:2629:-197.627,0,-141.409	1/1:92:0,92:0:0:92:3264:-293.925,-27.6948,0	1/1:89:0,89:0:0:89:3141:-282.704,-26.7917,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:152:0,152:0:0:152:5389:-485.109,-45.7566,0	1/1:147:0,147:0:0:147:5239:-471.602,-44.2514,0	0/1:43:24,19:24:860:19:684:-48.9414,0,-64.7775	.:.:.:.:.:.:.:.	0/1:82:41,41:41:1468:41:1460:-107.007,0,-107.732	0/1:15:7,8:7:248:8:284:-21.3832,0,-18.1487	0/1:131:69,62:69:2467:62:2196:-158.453,0,-182.849	0/1:68:37,31:37:1323:31:1095:-78.3666,0,-98.9013	1/1:46:0,46:0:0:46:1631:-147.078,-13.8474,0	0/1:54:19,35:19:684:35:1236:-95.2794,0,-45.6347	1/1:79:0,79:0:0:79:2827:-254.665,-23.7814,0	1/1:125:0,125:0:0:125:4424:-398.159,-37.6288,0	1/1:95:0,95:0:0:95:3384:-304.725,-28.5979,0	0/1:82:40,42:40:1419:42:1508:-111.33,0,-103.322	1/1:100:0,100:0:0:100:3576:-321.998,-30.103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:59:32,27:32:1148:27:968:-69.6766,0,-85.8691	1/1:13:0,13:0:0:13:451:-40.9198,-3.91339,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:75:39,36:39:1384:36:1292:-94.0065,0,-102.282	0/1:41:23,18:23:819:18:644:-45.9437,0,-61.6893	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:42:0,42:0:0:42:1500:-135.276,-12.6433,0	1/1:111:0,111:0:0:111:3960:-355.793,-33.4143,0	.:.:.:.:.:.:.:.	0/1:149:74,75:74:2647:75:2688:-197.294,0,-193.622	1/1:145:0,145:0:0:145:5161:-464.623,-43.6494,0	0/1:57:30,27:30:1072:27:968:-70.2787,0,-79.6337	1/1:34:0,34:0:0:34:1208:-108.94,-10.235,0	1/1:119:0,119:0:0:119:4225:-380.407,-35.8226,0	0/1:33:21,12:21:752:12:428:-28.9248,0,-58.0723	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:54:0,54:0:0:54:1916:-172.704,-16.2556,0	0/1:79:34,45:34:1212:45:1582:-118.888,0,-85.605	1/1:11:0,11:0:0:11:392:-35.6154,-3.31133,0	1/1:83:0,83:0:0:83:2968:-267.349,-24.9855,0	1/1:42:1,41:1:36:41:1468:-128.789,-9.04499,0	1/1:72:0,72:0:0:72:2561:-230.729,-21.6742,0	1/1:65:0,65:0:0:65:2316:-208.696,-19.567,0	0/1:79:36,43:36:1283:43:1523:-113.422,0,-91.9913	1/1:89:0,89:0:0:89:3148:-283.506,-26.7917,0	0/1:8:6,2:6:216:2:72:-4.42364,0,-17.3823	1/1:81:0,81:0:0:81:2888:-260.106,-24.3834,0	1/1:52:0,52:0:0:52:1844:-166.007,-15.6536,0	1/1:108:0,108:0:0:108:3829:-344.784,-32.5112,0	0/1:79:39,40:39:1374:40:1411:-103.505,0,-100.176	0/1:40:21,19:21:748:19:672:-48.7643,0,-55.6041	0/1:68:31,37:31:1099:37:1320:-98.6014,0,-78.7494	0/1:129:78,51:78:2791:51:1815:-124.798,0,-212.589	1/1:34:0,34:0:0:34:1177:-106.232,-10.235,0	1/1:67:0,67:0:0:67:2389:-215.249,-20.169,0	1/1:83:0,83:0:0:83:2912:-262.301,-24.9855,0	0/1:19:9,10:9:324:10:344:-25.5725,0,-23.7863	0/1:70:35,35:35:1208:35:1227:-89.6581,0,-87.9467	0/1:52:37,15:37:1332:15:504:-30.0274,0,-104.529	1/1:49:0,49:0:0:49:1752:-157.727,-14.7505,0	1/1:68:0,68:0:0:68:2420:-218.041,-20.47,0
chr03	3396599	.	A	T	121298	PASS	AB=0.486448;ABP=7.54204;AC=152;AF=0.808511;AN=188;AO=5489;CIGAR=1X;DP=6953;DPB=6953;DPRA=0;EPP=11835.5;EPPR=3177.7;GTI=0;LEN=1;MEANALT=1.01064;MQM=56.108;MQMR=59.3352;NS=94;NUMALT=1;ODDS=0.364632;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196658;QR=52346;RO=1462;RPL=67;RPP=11347.4;RPPR=2880.97;RPR=5422;RUN=1;SAF=57;SAP=11432.3;SAR=5432;SRF=35;SRP=2880.97;SRR=1427;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:15,20:15:540:20:706:-53.2186,0,-38.3958	0/1:55:29,26:29:1040:26:936:-67.8829,0,-77.3269	0/1:147:71,76:71:2548:76:2728:-200.737,0,-185.177	1/1:159:0,159:0:0:159:5720:-514.6,-47.8638,0	1/1:56:0,56:0:0:56:2016:-181.583,-16.8577,0	1/1:41:0,41:0:0:41:1464:-131.745,-12.3422,0	1/1:62:0,62:0:0:62:2232:-201.015,-18.6639,0	0/1:132:74,58:74:2652:58:2088:-146.556,0,-199.048	1/1:59:0,59:0:0:59:2108:-189.479,-17.7608,0	1/1:74:0,74:0:0:74:2649:-238.361,-22.2762,0	1/1:45:0,45:0:0:45:1608:-144.861,-13.5464,0	0/1:68:31,37:31:1088:37:1332:-99.304,0,-77.5614	1/1:51:0,51:0:0:51:1836:-164.894,-15.3525,0	1/1:60:0,60:0:0:60:2154:-193.861,-18.0618,0	1/1:49:0,49:0:0:49:1760:-157.945,-14.7505,0	1/1:48:0,48:0:0:48:1720:-154.881,-14.4494,0	1/1:38:0,38:0:0:38:1349:-121.542,-11.4391,0	1/1:17:0,17:0:0:17:608:-54.8538,-5.11751,0	1/1:21:0,21:0:0:21:748:-67.5539,-6.32163,0	1/1:221:0,221:0:0:221:7882:-708.883,-66.5276,0	1/1:80:0,80:0:0:80:2832:-254.771,-24.0824,0	0/1:164:105,59:105:3768:59:2105:-140.31,0,-289.792	1/1:66:0,66:0:0:66:2372:-213.586,-19.868,0	1/1:37:0,37:0:0:37:1328:-119.607,-11.1381,0	0/1:74:28,46:28:1004:46:1648:-125.996,0,-68.3144	0/1:212:96,116:96:3448:116:4141:-308.835,0,-246.596	1/1:158:0,158:0:0:158:5669:-509.641,-47.5627,0	1/1:27:0,27:0:0:27:972:-87.7004,-8.12781,0	0/1:177:74,103:74:2652:103:3690:-278.894,0,-185.611	1/1:127:0,127:0:0:127:4522:-406.634,-38.2308,0	1/1:57:0,57:0:0:57:2025:-182.458,-17.1587,0	0/1:8:3,5:3:108:5:180:-13.8549,0,-7.66693	1/1:19:0,19:0:0:19:684:-61.8418,-5.71957,0	1/1:3:0,3:0:0:3:108:-9.93145,-0.90309,0	1/1:17:0,17:0:0:17:608:-54.9808,-5.11751,0	0/1:28:18,10:18:648:10:360:-24.2674,0,-50.1946	1/1:99:0,99:0:0:99:3560:-320.182,-29.802,0	1/1:153:1,152:1:36:152:5389:-480.015,-42.4593,0	0/1:38:20,18:20:716:18:640:-46.3721,0,-53.2432	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	0/1:93:51,42:51:1828:42:1512:-108.266,0,-136.769	0/1:25:10,15:10:360:15:540:-41.3755,0,-25.2118	0/1:163:87,76:87:3124:76:2717:-195.218,0,-232.265	0/1:34:19,15:19:684:15:536:-38.3252,0,-51.6553	1/1:36:0,36:0:0:36:1288:-116.094,-10.8371,0	0/1:81:43,38:43:1536:38:1364:-98.6048,0,-113.509	1/1:94:0,94:0:0:94:3365:-302.379,-28.2968,0	1/1:114:1,113:1:36:113:4049:-360.824,-30.7191,0	1/1:60:0,60:0:0:60:2156:-193.982,-18.0618,0	0/1:81:42,39:42:1512:39:1400:-101.811,0,-111.955	1/1:103:0,103:0:0:103:3700:-333.122,-31.0061,0	1/1:19:0,19:0:0:19:684:-61.8716,-5.71957,0	0/1:164:68,94:68:2440:94:3384:-254.84,0,-170.668	1/1:70:0,70:0:0:70:2478:-223.163,-21.0721,0	1/1:20:0,20:0:0:20:720:-65.0364,-6.0206,0	0/1:97:45,52:45:1616:52:1860:-137.963,0,-116.53	0/1:24:15,9:15:540:9:320:-21.9118,0,-41.7118	0/1:13:8,5:8:288:5:180:-12.6377,0,-22.354	0/1:20:11,9:11:379:9:324:-23.4853,0,-28.4148	1/1:53:0,53:0:0:53:1895:-170.662,-15.9546,0	1/1:69:1,68:1:36:68:2444:-216.546,-17.1728,0	1/1:14:0,14:0:0:14:489:-44.2905,-4.21442,0	0/1:159:84,75:84:3016:75:2696:-194.88,0,-223.69	1/1:114:0,114:0:0:114:4096:-368.531,-34.3174,0	0/1:67:49,18:49:1756:18:648:-38.2477,0,-138.127	1/1:104:0,104:0:0:104:3736:-336.095,-31.3071,0	1/1:123:2,121:2:72:121:4352:-384.46,-30.19,0	0/1:127:74,53:74:2626:53:1908:-133.521,0,-198.354	1/1:31:0,31:0:0:31:1116:-100.672,-9.33193,0	1/1:46:0,46:0:0:46:1640:-147.664,-13.8474,0	0/1:40:28,12:28:1004:12:432:-27.1754,0,-78.6122	1/1:18:0,18:0:0:18:648:-58.6355,-5.41854,0	1/1:100:0,100:0:0:100:3600:-323.301,-30.103,0	1/1:88:0,88:0:0:88:3164:-283.605,-26.4906,0	1/1:73:0,73:0:0:73:2620:-235.628,-21.9752,0	1/1:196:0,196:0:0:196:7036:-632.582,-59.0019,0	0/1:149:80,69:80:2847:69:2468:-176.69,0,-211.073	1/1:100:0,100:0:0:100:3558:-318.458,-30.103,0	0/1:13:7,6:7:252:6:216:-15.8533,0,-19.1156	1/1:78:0,78:0:0:78:2783:-250.341,-23.4803,0	1/1:133:0,133:0:0:133:4754:-426.907,-40.037,0	1/1:152:0,152:0:0:152:5451:-489.968,-45.7566,0	0/1:36:12,24:12:428:24:864:-66.741,0,-27.9857	0/1:35:16,19:16:576:19:684:-51.335,0,-41.6389	0/1:29:18,11:18:644:11:396:-27.2428,0,-49.5248	0/1:73:36,37:36:1281:37:1328:-97.8058,0,-93.5375	1/1:19:0,19:0:0:19:684:-61.677,-5.71957,0	1/1:47:0,47:0:0:47:1691:-152.036,-14.1484,0	1/1:53:0,53:0:0:53:1904:-170.354,-15.9546,0	0/1:32:14,18:14:504:18:648:-48.9505,0,-36.0366	0/1:93:47,46:47:1684:46:1652:-120.858,0,-123.368	0/1:55:29,26:29:1029:26:936:-67.8446,0,-76.3287	1/1:85:0,85:0:0:85:3051:-274.36,-25.5876,0	1/1:54:0,54:0:0:54:1944:-174.758,-16.2556,0
chr03	3396611	.	GAC	AAT,AAC	150541	PASS	AB=0.482857,0.514643;ABP=10.1575,8.22494;AC=152,36;AF=0.808511,0.191489;AN=188;AO=5447,1449;CIGAR=1X1M1X,1X2M;DP=6913;DPB=6943.67;DPRA=0,1.22988;EPP=11770.3,2852.81;EPPR=0;GTI=0;LEN=3,1;MEANALT=1.62766,2.19048;MQM=56.0582,59.2767;MQMR=0;NS=94;NUMALT=2;ODDS=0.525787;PAIRED=0,0;PAIREDR=0;PAO=46,46;PQA=1106.5,1106.5;PQR=0;PRO=0;QA=192906,51844;QR=0;RO=0;RPL=5440,1422;RPP=11770.3,2919.32;RPPR=0;RPR=7,27;RUN=1,1;SAF=0,8;SAP=11831,3080.37;SAR=5447,1441;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,19,16:0:0:19,16:663,576:-101.121,-47.2974,-41.5778,-54.1235,0,-49.3071	1/2:58:0,26,32:0:0:26,32:912,1135:-166.922,-92.8191,-84.9923,-74.4549,0,-64.822	1/2:144:0,75,69:0:0:75,69:2669,2476:-418.899,-202.062,-179.485,-217.076,0,-196.305	1/1:160:0,158,2:0:0:158,2:5618,72:-505.079,-47.5627,0,-499.204,-41.3281,-498.602	1/1:55:0,55,0:0:0:55,0:1948,0:-174.865,-16.5567,0,-174.865,-16.5567,-174.865	1/1:40:0,40,0:0:0:40,0:1417,0:-127.393,-12.0412,0,-127.393,-12.0412,-127.393	1/1:63:0,63,0:0:0:63,0:2242,0:-201.958,-18.9649,0,-201.958,-18.9649,-201.958	1/2:133:0,57,75:0:0:57,75:1999,2692:-381.345,-219.523,-202.364,-161.864,0,-139.287	1/1:57:0,57,0:0:0:57,0:2027,0:-182.052,-17.1587,0,-182.052,-17.1587,-182.052	1/1:74:0,74,0:0:0:74,0:2621,0:-235.926,-22.2762,0,-235.926,-22.2762,-235.926	1/1:46:0,46,0:0:0:46,0:1596,0:-143.869,-13.8474,0,-143.869,-13.8474,-143.869	1/2:68:0,37,31:0:0:37,31:1318,1101:-197.102,-90.0172,-78.8791,-107.44,0,-98.108	1/1:51:0,50,0:0:0:50,0:1792,0:-160.579,-15.0515,0,-160.579,-15.0515,-160.579	1/1:60:0,59,0:0:0:59,0:2080,0:-186.962,-17.7608,0,-186.962,-17.7608,-186.962	1/1:48:0,48,0:0:0:48,0:1709,0:-153.73,-14.4494,0,-153.73,-14.4494,-153.73	1/1:49:0,49,0:0:0:49,0:1752,0:-157.757,-14.7505,0,-157.757,-14.7505,-157.757	1/1:39:0,39,0:0:0:39,0:1367,0:-123.147,-11.7402,0,-123.147,-11.7402,-123.147	1/1:17:0,17,0:0:0:17,0:612,0:-55.2103,-5.11751,0,-55.2103,-5.11751,-55.2103	1/1:21:0,21,0:0:0:21,0:753,0:-68.0019,-6.32163,0,-68.0019,-6.32163,-68.0019	1/1:218:0,218,0:0:0:218,0:7672,0:-690.06,-65.6245,0,-690.06,-65.6245,-690.06	1/1:80:0,80,0:0:0:80,0:2855,0:-256.657,-24.0824,0,-256.657,-24.0824,-256.657	1/2:161:0,56,105:0:0:56,105:1979,3765:-468.418,-307.263,-290.405,-161.509,0,-129.901	1/1:65:0,65,0:0:0:65,0:2287,0:-205.945,-19.567,0,-205.945,-19.567,-205.945	1/1:37:0,37,0:0:0:37,0:1296,0:-116.673,-11.1381,0,-116.673,-11.1381,-116.673	1/2:68:0,43,25:0:0:43,25:1521,896:-196.575,-73.0343,-60.09,-123.557,0,-116.031	1/2:211:0,113,97:0:0:113,97:4038,3453:-610.334,-281.388,-247.372,-329.021,0,-299.821	1/1:157:0,157,0:0:0:157,0:5564,0:-500.359,-47.2617,0,-500.359,-47.2617,-500.359	1/1:27:0,26,1:0:0:26,1:934,36:-83.9237,-7.82678,0,-80.9862,-4.52954,-80.6852	1/2:180:0,103,77:0:0:103,77:3650,2763:-522.649,-225.4,-194.394,-297.606,0,-274.426	1/1:128:0,128,0:0:0:128,0:4527,0:-406.904,-38.5318,0,-406.904,-38.5318,-406.904	1/1:57:0,57,0:0:0:57,0:2012,0:-181.29,-17.1587,0,-181.29,-17.1587,-181.29	1/2:8:0,5,3:0:0:5,3:170,108:-22.6649,-9.17208,-7.66693,-13.8428,0,-12.9397	1/1:19:0,19,0:0:0:19,0:682,0:-61.6622,-5.71957,0,-61.6622,-5.71957,-61.6622	1/1:3:0,3,0:0:0:3,0:106,0:-9.74712,-0.90309,0,-9.74712,-0.90309,-9.74712	1/1:17:0,17,0:0:0:17,0:610,0:-55.1606,-5.11751,0,-55.1606,-5.11751,-55.1606	1/2:29:0,10,19:0:0:10,19:350,680:-84.2124,-55.7811,-52.7708,-28.7835,0,-23.0639	1/1:100:0,100,0:0:0:100,0:3524,0:-316.971,-30.103,0,-316.971,-30.103,-316.971	1/1:153:0,152,1:0:0:152,1:5389,36:-482.401,-45.7566,0,-479.463,-42.4593,-479.162	1/2:37:0,18,19:0:0:18,19:648,674:-107.935,-55.1822,-49.7636,-53.1097,0,-47.3902	1/1:2:0,2,0:0:0:2,0:72,0:-6.83179,-0.60206,0,-6.83179,-0.60206,-6.83179	1/2:91:0,42,49:0:0:42,49:1486,1756:-264.495,-143.565,-130.922,-121.285,0,-106.535	1/2:25:0,15,10:0:0:15,10:525,360:-72.4012,-29.7273,-25.2118,-43.0296,0,-40.0193	1/2:152:0,70,81:0:0:70,81:2443,2912:-435.099,-236.843,-215.77,-197.561,0,-173.178	1/2:34:0,15,19:0:0:15,19:522,680:-98.2377,-55.8096,-51.2941,-42.7803,0,-37.0607	1/1:36:0,36,0:0:0:36,0:1275,0:-114.942,-10.8371,0,-114.942,-10.8371,-114.942	1/2:80:0,37,43:0:0:37,43:1304,1531:-230.624,-124.498,-113.359,-106.479,0,-93.5349	1/1:91:0,90,0:0:0:90,0:3202,0:-287.349,-27.0927,0,-287.349,-27.0927,-287.349	1/1:115:0,114,1:0:0:114,1:4035,36:-362.814,-34.3174,0,-359.876,-31.0202,-359.575	1/1:60:0,60,0:0:0:60,0:2128,0:-191.59,-18.0618,0,-191.59,-18.0618,-191.59	1/2:83:0,38,44:0:0:38,44:1345,1580:-238.308,-128.851,-117.412,-109.453,0,-96.2082	1/1:102:0,101,0:0:0:101,0:3579,0:-321.834,-30.404,0,-321.834,-30.404,-321.834	1/1:19:0,19,0:0:0:19,0:680,0:-61.5118,-5.71957,0,-61.5118,-5.71957,-61.5118	1/2:161:0,92,69:0:0:92,69:3249,2472:-465.761,-201.873,-174.178,-264.244,0,-243.473	1/1:71:0,71,0:0:0:71,0:2515,0:-226.499,-21.3731,0,-226.499,-21.3731,-226.499	1/1:20:0,20,0:0:0:20,0:718,0:-64.8577,-6.0206,0,-64.8577,-6.0206,-64.8577	1/2:95:0,51,44:0:0:51,44:1771,1584:-273.179,-129.606,-114.254,-143.926,0,-130.681	1/2:23:0,7,16:0:0:7,16:252,576:-67.6434,-47.0873,-44.9801,-20.9153,0,-16.098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chr03	3396642	.	T	C	15785.2	PASS	AB=0.494347;ABP=3.55038;AC=36;AF=0.193548;AN=186;AO=968;CIGAR=1X;DP=4531;DPB=4531;DPRA=1.29989;EPP=2105;EPPR=7735.62;GTI=1;LEN=1;MEANALT=1.02564;MQM=59.9793;MQMR=59.9963;NS=93;NUMALT=1;ODDS=2.96631;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34438;QR=127659;RO=3561;RPL=0;RPP=2105;RPPR=7735.62;RPR=968;RUN=1;SAF=968;SAP=2105;SAR=0;SRF=3561;SRP=7735.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:5,9:5:180:9:312:-24.2009,0,-12.3376	0/1:22:11,11:11:396:11:388:-28.6347,0,-29.3601	0/1:67:32,35:32:1152:35:1252:-92.8161,0,-83.8211	0/0:118:118,0:118:4228:0:0:0,-35.5215,-380.7	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:41:16,25:16:568:25:896:-68.6181,0,-39.1096	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/1:91:41,50:41:1476:50:1752:-130.57,0,-105.742	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:55:54,1:54:1940:1:36:0,-12.9584,-171.278	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:62:13,49:13:468:49:1748:-138.94,0,-23.7958	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:36:21,15:21:756:15:536:-37.7377,0,-57.5301	0/1:139:82,57:82:2936:57:2040:-142.029,0,-222.631	0/0:93:92,1:92:3280:1:36:0,-24.3975,-291.823	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:157:65,92:65:2336:92:3269:-247.169,0,-163.238	0/0:46:45,1:45:1612:1:36:0,-10.2491,-141.772	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:157:157,0:157:5636:0:0:0,-47.2617,-507.359	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:52:25,27:25:891:27:960:-71.0627,0,-64.8552	.:.:.:.:.:.:.:.	0/1:61:33,28:33:1188:28:1000:-71.9525,0,-88.8658	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7641	0/1:42:29,13:29:1017:13:453:-28.4564,0,-79.1966	0/1:40:25,15:25:896:15:532:-36.1719,0,-68.9192	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:53:19,33:19:676:33:1149:-87.7017,0,-45.1548	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:60:26,34:26:932:34:1212:-91.3245,0,-66.1371	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:54:27,27:27:972:27:964:-70.8212,0,-71.5423	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:74:42,32:42:1512:32:1144:-80.9887,0,-114.098	0/1:22:12,10:12:432:10:356:-25.7524,0,-32.5985	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:94:41,53:41:1464:53:1884:-141.542,0,-103.759	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:32:19,13:19:684:13:460:-32.1024,0,-52.2574	0/0:51:50,0:50:1796:0:0:0,-15.0515,-161.563	0/0:53:51,2:51:1832:2:72:0,-9.11787,-158.324	0/1:82:19,63:19:676:63:2256:-178.612,0,-36.4835	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:32:17,15:17:608:15:532:-38.5801,0,-45.4191	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:51:29,22:29:1044:22:792:-56.2531,0,-78.9223	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:49:26,23:26:932:23:820:-59.372,0,-69.4484	0/1:65:36,29:36:1292:29:1036:-73.987,0,-97.0168	0/1:37:19,18:19:680:18:644:-47.1525,0,-50.3911	0/1:117:74,43:74:2660:43:1532:-102.953,0,-204.396	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/1:64:40,24:40:1440:24:851:-57.6435,0,-110.632	0/1:117:78,39:78:2792:39:1392:-90.3585,0,-216.3	0/1:69:35,34:35:1260:34:1200:-87.5345,0,-92.9344	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884
chr03	3396735	.	G	A	15782.2	PASS	AB=0.561763;ABP=56.3886;AC=37;AF=0.198925;AN=186;AO=920;CIGAR=1X;DP=3964;DPB=3964;DPRA=1.15652;EPP=2000.76;EPPR=6599.95;GTI=2;LEN=1;MEANALT=1;MQM=59.9293;MQMR=59.9602;NS=93;NUMALT=1;ODDS=0.657245;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32894;QR=107936;RO=3042;RPL=0;RPP=2000.76;RPPR=6599.95;RPR=920;RUN=1;SAF=0;SAP=2000.76;SAR=920;SRF=0;SRP=6608.63;SRR=3042;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	0/1:29:21,8:21:756:8:284:-17.1735,0,-59.6374	0/1:45:18,27:18:644:27:968:-73.891,0,-44.7361	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.845	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/1:61:24,37:24:860:37:1332:-101.763,0,-59.359	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/0:30:30,0:30:1044:0:0:0,-9.0309,-94.2669	0/1:71:28,43:28:973:43:1527:-116.348,0,-66.5069	0/0:56:56,0:56:1945:0:0:0,-16.8577,-175.322	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.859	0/0:58:58,0:58:2052:0:0:0,-17.4597,-184.949	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:34:33,0:33:1163:0:0:0,-9.93399,-104.612	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7675	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.762	0/0:45:45,0:45:1584:0:0:0,-13.5463,-142.848	0/1:19:4,15:4:140:15:540:-43.217,0,-7.22501	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:112:46,66:46:1643:66:2368:-179.663,0,-114.443	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:32:32,0:32:1116:0:0:0,-9.63296,-100.745	0/1:99:20,79:20:720:79:2804:-222.796,0,-35.3268	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:174:173,0:173:6191:0:0:0,-52.0782,-556.927	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:23:14,9:14:495:9:324:-22.5822,0,-37.9593	.:.:.:.:.:.:.:.	0/1:69:38,31:38:1360:31:1116:-79.9806,0,-101.93	0/1:21:10,11:10:360:11:392:-29.2984,0,-26.4227	0/1:40:13,27:13:468:27:972:-75.7567,0,-30.4184	0/1:45:29,16:29:1025:16:567:-37.8144,0,-79.0143	0/0:63:63,0:63:2209:0:0:0,-18.9649,-199.072	0/1:49:30,19:30:1068:19:676:-46.3807,0,-81.6816	0/0:89:89,0:89:3133:0:0:0,-26.7917,-282.005	0/0:94:94,0:94:3321:0:0:0,-28.2968,-299.102	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/1:46:20,26:20:698:26:928:-69.9909,0,-49.2941	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:45:18,27:18:629:27:968:-73.891,0,-43.3874	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:56:17,39:17:603:39:1388:-108.359,0,-37.7418	0/1:8:5,3:5:171:3:108:-7.66651,0,-13.3172	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:12:1,11:1:36:11:392:-32.0218,-0.0140851,0	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1435	0/0:74:74,0:74:2609:0:0:0,-22.2762,-235.056	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:122:54,68:54:1929:68:2428:-182.032,0,-137.159	0/0:40:39,1:39:1396:1:36:0,-8.44292,-122.341	0/1:47:24,23:24:845:23:824:-60.3349,0,-62.2187	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:52:51,1:51:1813:1:36:0,-12.0553,-159.851	0/1:36:11,25:11:396:25:900:-70.4839,0,-25.1457	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.173	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:49:49,0:49:1735:0:0:0,-14.7505,-156.434	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:98:98,0:98:3468:0:0:0,-29.5009,-312.175	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:63:36,27:36:1274:27:972:-68.833,0,-95.9966	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/0:89:89,0:89:3152:0:0:0,-26.7917,-283.905	0/1:45:24,21:24:842:21:745:-53.8271,0,-62.5507	0/1:51:26,25:26:908:25:863:-62.6294,0,-66.68	0/1:43:18,25:18:625:25:900:-68.3767,0,-43.6282	0/1:111:67,44:67:2384:44:1575:-108.626,0,-181.401	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/0:62:62,0:62:2159:0:0:0,-18.6639,-194.573	0/0:62:62,0:62:2172:0:0:0,-18.6639,-195.742	0/1:30:9,21:9:320:21:756:-59.3363,0,-20.1115	0/1:79:31,48:31:1108:48:1713:-130.655,0,-76.2496	0/1:68:20,48:20:707:48:1728:-135.335,0,-43.4845	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:104:104,0:104:3707:0:0:0,-31.3071,-333.833
chr03	3446787	.	A	G	17407.1	PASS	AB=0.489252;ABP=5.15742;AC=34;AF=0.180851;AN=188;AO=1053;CIGAR=1X;DP=5864;DPB=5864;DPRA=1.16038;EPP=2272.23;EPPR=10292;GTI=0;LEN=1;MEANALT=1;MQM=59.9791;MQMR=60;NS=94;NUMALT=1;ODDS=4.11406;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37589;QR=172269;RO=4810;RPL=1051;RPP=2272.23;RPPR=10292;RPR=2;RUN=1;SAF=0;SAP=2289.57;SAR=1053;SRF=0;SRP=10447.8;SRR=4810;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:15,8:15:536:8:284:-18.9797,0,-41.6511	0/1:47:23,24:23:824:24:855:-63.1218,0,-60.3349	0/1:94:51,43:51:1836:43:1536:-110.236,0,-137.224	0/0:167:166,1:166:5936:1:36:0,-46.6737,-530.748	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:53:53,0:53:1886:0:0:0,-15.9546,-170.017	0/1:72:45,27:45:1603:27:961:-65.1319,0,-122.885	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:83:83,0:83:2945:0:0:0,-24.9855,-265.284	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:82:44,38:44:1584:38:1364:-98.3763,0,-118.167	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:57:57,0:57:2043:0:0:0,-17.1587,-184.141	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:149:149,0:149:5333:0:0:0,-44.8535,-480.102	0/0:148:147,0:147:5276:0:0:0,-44.2514,-474.614	0/1:38:14,24:14:504:24:860:-66.2827,0,-34.259	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:21:17,4:17:604:4:144:-6.99199,0,-48.369	0/1:160:89,71:89:3181:71:2523:-179.157,0,-238.348	0/0:173:173,0:173:6208:0:0:0,-52.0782,-558.815	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:225:110,115:110:3952:115:4091:-300.646,0,-288.138	0/0:62:60,2:60:2151:2:63:0,-12.6807,-187.873	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:149:149,0:149:5331:0:0:0,-44.8535,-479.923	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.835	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:50:30,20:30:1068:20:716:-49.7162,0,-81.3806	0/1:11:2,9:2:68:9:324:-26.1945,0,-3.14638	0/1:73:39,34:39:1389:34:1216:-87.7714,0,-103.332	0/1:31:20,11:20:716:11:396:-26.6508,0,-55.4358	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:68:34,34:34:1220:34:1224:-89.997,0,-89.6368	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/0:124:124,0:124:4437:0:0:0,-37.3277,-399.499	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/1:112:56,56:56:2003:56:2000:-146.558,0,-146.827	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:61:31,30:31:1112:30:1072:-78.4296,0,-82.0285	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.738	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:104:46,58:46:1656:58:2055:-153.914,0,-118.021	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:206:109,97:109:3879:97:3479:-251.308,0,-287.294	0/0:132:132,0:132:4748:0:0:0,-39.736,-427.476	0/1:43:18,25:18:648:25:887:-67.2038,0,-45.7076	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.763	0/0:118:118,0:118:4221:0:0:0,-35.5215,-380.069	0/1:121:47,74:47:1676:74:2652:-202.501,0,-114.703	0/0:27:26,1:26:927:1:36:0,-4.52953,-80.1491	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:38:19,19:19:680:19:675:-49.6378,0,-50.09	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:68:67,1:67:2400:1:36:0,-16.8718,-212.659	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.151	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:144:144,0:144:5140:0:0:0,-43.3483,-462.741	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.593	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/0:183:182,1:182:6540:1:36:0,-51.4902,-585.081	0/1:52:31,21:31:1108:21:743:-51.5398,0,-84.3774	0/1:54:38,16:38:1364:16:570:-35.3771,0,-106.805	0/1:41:20,21:20:720:21:743:-54.7637,0,-52.7865	0/1:98:41,57:41:1476:57:2048:-155.091,0,-103.635	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/1:64:36,28:36:1288:28:992:-70.3285,0,-96.9577	0/1:52:11,41:11:392:41:1460:-116.042,0,-19.9665	0/0:130:130,0:130:4641:0:0:0,-39.1339,-417.852	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361
chr03	3447050	.	G	T	21128.1	PASS	AB=0.519464;ABP=10.8718;AC=36;AF=0.193548;AN=186;AO=1248;CIGAR=1X;DP=6300;DPB=6300;DPRA=1.04036;EPP=2713.01;EPPR=10951.6;GTI=1;LEN=1;MEANALT=1.04878;MQM=59.9575;MQMR=59.9947;NS=93;NUMALT=1;ODDS=0.254516;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44618;QR=180257;RO=5050;RPL=1246;RPP=2695.66;RPPR=10925.6;RPR=2;RUN=1;SAF=1246;SAP=2695.66;SAR=2;SRF=5047;SRP=10942.9;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:122:53,69:53:1904:69:2472:-186.008,0,-134.912	0/1:32:19,13:19:665:13:464:-32.4645,0,-50.5398	0/0:168:168,0:168:6029:0:0:0,-50.573,-542.71	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:98:40,58:40:1436:58:2080:-157.969,0,-100.037	0/0:45:45,0:45:1586:0:0:0,-13.5463,-143.026	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.487	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:44:21,22:21:728:22:792:-58.3016,0,-52.5342	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:87:87,0:87:3081:0:0:0,-26.1896,-277.516	0/0:64:63,1:63:2247:1:32:0,-16.0666,-199.287	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/0:196:196,0:196:7015:0:0:0,-59.0019,-631.412	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/1:49:14,35:14:504:35:1256:-98.5948,0,-30.9476	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:53:53,0:53:1874:0:0:0,-15.9546,-168.935	0/1:24:12,12:12:432:12:427:-31.5434,0,-31.9965	0/1:218:97,121:97:3471:121:4306:-322.093,0,-246.977	0/0:101:101,0:101:3607:0:0:0,-30.404,-324.836	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/1:130:77,53:77:2749:53:1904:-132.504,0,-208.517	0/0:82:79,3:79:2829:3:104:0,-14.9817,-245.144	0/0:86:86,0:86:3083:0:0:0,-25.8886,-277.695	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:172:171,1:171:6118:1:36:0,-48.1789,-547.121	0/0:127:127,0:127:4556:0:0:0,-38.2308,-410.205	0/1:72:36,36:36:1281:36:1283:-94.0985,0,-93.9171	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:126:62,64:62:2216:64:2288:-168.252,0,-161.775	0/1:30:12,18:12:424:18:648:-49.621,0,-29.4655	0/1:55:30,25:30:1080:25:876:-62.5976,0,-80.9566	0/1:59:28,31:28:1000:31:1108:-82.2702,0,-72.5546	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:42:13,29:13:453:29:1034:-80.7294,0,-28.4564	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/0:114:114,0:114:4067:0:0:0,-34.3174,-366.217	0/0:70:70,0:70:2485:0:0:0,-21.0721,-223.902	0/1:103:49,54:49:1732:54:1944:-144.23,0,-125.156	0/0:93:93,0:93:3306:0:0:0,-27.9958,-297.757	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:69:33,36:33:1188:36:1269:-93.7397,0,-86.4575	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:68:35,33:35:1232:33:1171:-85.0672,0,-90.7113	0/1:17:5,12:5:176:12:428:-33.7413,0,-11.0675	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:126:126,0:126:4496:0:0:0,-37.9298,-404.808	.:.:.:.:.:.:.:.	0/1:200:110,90:110:3933:90:3211:-229.006,0,-293.955	0/0:135:135,0:135:4829:0:0:0,-40.639,-434.763	0/1:80:41,39:41:1472:39:1396:-101.857,0,-108.694	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/0:123:123,0:123:4377:0:0:0,-37.0267,-394.102	0/1:107:42,65:42:1482:65:2324:-177.21,0,-101.46	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:77:38,39:38:1356:39:1400:-103.12,0,-99.1612	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:95:95,0:95:3362:0:0:0,-28.5978,-302.793	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:152:152,0:152:5449:0:0:0,-45.7566,-490.536	0/1:42:13,29:13:464:29:1040:-81.2688,0,-29.4542	0/0:66:65,1:65:2304:1:36:0,-16.2697,-204.021	0/1:5:4,1:4:135:1:36:-2.09312,0,-10.9774	0/0:137:137,0:137:4870:0:0:0,-41.2411,-438.45	0/0:66:65,1:65:2325:1:36:0,-16.2697,-205.91	0/0:112:112,0:112:3970:0:0:0,-33.7154,-357.491	0/1:104:56,47:56:1986:47:1684:-120.481,0,-147.647	0/1:35:16,19:16:572:19:684:-51.3543,0,-41.2774	0/1:65:39,26:39:1384:26:932:-64.6319,0,-105.292	0/1:120:68,52:68:2444:52:1864:-131.916,0,-184.091	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.923	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:26:8,18:8:288:18:648:-50.8251,0,-18.4406	0/1:61:25,36:25:896:36:1281:-97.2275,0,-62.5975	0/1:59:26,33:26:936:33:1188:-89.4678,0,-66.7987	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.915	0/0:106:106,0:106:3788:0:0:0,-31.9092,-341.116
chr03	3528037	.	G	A	324981	PASS	AB=0.514528;ABP=12.5373;AC=152;AF=0.808511;AN=188;AO=11718;CIGAR=1X;DP=14261;DPB=14261;DPRA=153.333;EPP=25431;EPPR=5525.06;GTI=1;LEN=1;MEANALT=1;MQM=59.8274;MQMR=59.9882;NS=94;NUMALT=1;ODDS=0.728634;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=419492;QR=90048;RO=2543;RPL=6492;RPP=300.018;RPPR=175.158;RPR=5226;RUN=1;SAF=6494;SAP=301.898;SAR=5224;SRF=1496;SRP=175.158;SRR=1047;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:36,33:36:1275:33:1184:-86.0796,0,-94.2812	0/1:229:118,111:118:4208:111:3980:-289.446,0,-309.967	0/1:223:92,131:92:3282:131:4690:-355.042,0,-228.469	1/1:282:0,282:0:0:282:10103:-909.187,-84.8905,0	1/1:112:0,112:0:0:112:4023:-362.244,-33.7154,0	1/1:91:0,91:0:0:91:3249:-292.622,-27.3937,0	1/1:257:0,257:0:0:257:9200:-827.893,-77.3647,0	0/1:248:125,123:125:4444:123:4380:-319.696,0,-325.479	1/1:197:0,197:0:0:197:7051:-634.324,-59.3029,0	1/1:212:0,212:0:0:212:7527:-677.22,-63.8184,0	1/1:148:0,148:0:0:148:5268:-474.153,-44.5524,0	0/1:146:72,74:72:2556:74:2660:-195.679,0,-186.338	1/1:155:0,155:0:0:155:5540:-498.682,-46.6597,0	1/1:171:1,170:1:36:170:6086:-543.292,-47.8779,0	1/1:134:0,134:0:0:134:4812:-433.206,-40.338,0	1/1:131:1,130:1:36:130:4652:-415.223,-35.8367,0	1/1:146:2,144:2:72:144:5180:-459.476,-37.1137,0	1/1:144:0,144:0:0:144:5164:-464.891,-43.3483,0	1/1:106:0,106:0:0:106:3783:-340.624,-31.9092,0	1/1:241:0,241:0:0:241:8642:-777.752,-72.5482,0	1/1:195:0,195:0:0:195:6991:-629.243,-58.7009,0	0/1:66:42,24:42:1495:24:855:-57.4022,0,-114.976	1/1:179:0,179:0:0:179:6402:-576.261,-53.8844,0	1/1:192:0,192:0:0:192:6880:-619.252,-57.7978,0	0/1:83:38,45:38:1347:45:1611:-120.294,0,-96.544	0/1:279:150,129:150:5306:129:4609:-330.986,0,-393.691	1/1:238:2,236:2:72:236:8428:-751.529,-64.8084,0	1/1:82:1,81:1:36:81:2912:-258.716,-21.0862,0	0/1:335:166,169:166:5891:169:6044:-443.207,0,-429.458	1/1:159:2,157:2:68:157:5605:-498.097,-41.4061,0	1/1:204:1,203:1:36:203:7284:-651.972,-57.8118,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:216:-19.7858,-1.80618,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	1/1:262:0,262:0:0:262:9368:-843.074,-78.8699,0	1/1:173:1,172:1:32:172:6126:-548.209,-48.8789,0	0/1:143:51,92:51:1812:92:3308:-254.882,0,-120.314	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:250:121,129:121:4245:129:4620:-340.698,0,-306.974	0/1:89:37,52:37:1254:52:1872:-141.942,0,-86.3611	0/1:187:90,97:90:3190:97:3466:-255.84,0,-231.032	0/1:158:90,68:90:3219:68:2444:-172.641,0,-242.369	1/1:130:0,130:0:0:130:4658:-419.253,-39.1339,0	0/1:163:63,100:63:2232:100:3600:-275.127,0,-152.074	1/1:117:0,117:0:0:117:4175:-375.899,-35.2205,0	1/1:236:0,236:0:0:236:8469:-762.049,-71.0431,0	1/1:155:0,155:0:0:155:5576:-501.958,-46.6597,0	0/1:214:112,102:112:3991:102:3655:-264.726,0,-294.96	1/1:229:0,229:0:0:229:8185:-736.64,-68.9359,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:199:102,97:102:3640:97:3484:-253.823,0,-267.901	1/1:100:0,100:0:0:100:3574:-321.862,-30.103,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:161:59,102:59:2100:102:3650:-280.209,0,-140.796	0/1:64:33,31:33:1168:31:1112:-81.1207,0,-86.1613	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/1:10:8,2:8:288:2:72:-3.80282,0,-23.2571	1/1:124:0,124:0:0:124:4411:-397.146,-37.3277,0	1/1:199:0,199:0:0:199:7124:-641.199,-59.905,0	1/1:9:0,9:0:0:9:324:-29.4881,-2.70927,0	1/1:216:1,215:1:36:215:7684:-687.471,-61.4242,0	1/1:261:1,260:1:36:260:9306:-833.899,-74.9706,0	0/1:142:67,75:67:2367:75:2676:-198.33,0,-170.54	1/1:117:0,117:0:0:117:4187:-377.006,-35.2205,0	1/1:222:2,220:2:72:220:7888:-703.078,-59.9919,0	0/1:150:98,52:98:3467:52:1864:-122.872,0,-267.088	1/1:96:1,95:1:36:95:3416:-304.045,-25.3006,0	1/1:146:0,146:0:0:146:5227:-470.069,-43.9504,0	0/1:185:85,100:85:2974:100:3583:-266.983,0,-212.203	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:112:1,111:1:36:111:3988:-355.469,-30.1171,0	1/1:122:0,122:0:0:122:4380:-394.372,-36.7257,0	1/1:319:0,319:0:0:319:11418:-1027.47,-96.0286,0	1/1:221:0,221:0:0:221:7905:-711.456,-66.5276,0	0/1:195:89,106:89:3172:106:3780:-280.735,0,-226.997	1/1:160:0,160:0:0:160:5727:-515.364,-48.1648,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:184:0,184:0:0:184:6598:-593.867,-55.3895,0	1/1:169:1,168:1:36:168:6032:-539.357,-47.2758,0	1/1:350:0,350:0:0:350:12498:-1124.62,-105.361,0	0/1:150:62,88:62:2184:88:3164:-239.827,0,-151.67	0/1:144:57,87:57:2023:87:3114:-237.127,0,-138.994	0/1:158:80,78:80:2806:78:2804:-205.034,0,-205.217	0/1:222:115,107:115:4079:107:3828:-277.884,0,-300.471	1/1:102:0,102:0:0:102:3657:-329.315,-30.7051,0	1/1:143:0,143:0:0:143:5144:-463.082,-43.0473,0	1/1:164:0,164:0:0:164:5876:-528.933,-49.3689,0	0/1:169:72,97:72:2520:97:3468:-261.304,0,-176.175	0/1:193:87,106:87:3071:106:3774:-281.742,0,-218.52	0/1:142:89,53:89:3126:53:1889:-127.538,0,-238.821	1/1:175:1,174:1:36:174:6219:-556.208,-49.082,0	1/1:223:0,223:0:0:223:7998:-719.831,-67.1297,0
chr03	3843853	.	C	A	191752	PASS	AB=0.489609;ABP=5.26661;AC=159;AF=0.854839;AN=186;AO=8600;CIGAR=1X;DP=9853;DPB=9853;DPRA=0;EPP=18495.7;EPPR=2654.55;GTI=1;LEN=1;MEANALT=1.10753;MQM=59.8109;MQMR=59.9428;NS=93;NUMALT=1;ODDS=0.336341;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=306880;QR=44166;RO=1241;RPL=21;RPP=18495.7;RPPR=2654.55;RPR=8579;RUN=1;SAF=0;SAP=18677.7;SAR=8600;SRF=0;SRP=2697.81;SRR=1241;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:14,24:14:496:24:847:-65.1059,0,-33.5351	0/1:101:57,44:57:2044:44:1576:-111.728,0,-153.821	0/1:158:98,59:98:3504:59:2112:-142.727,0,-267.947	1/1:234:0,234:0:0:234:8341:-750.684,-70.441,0	1/1:83:0,83:0:0:83:2959:-266.498,-24.9855,0	1/1:74:0,73:0:0:73:2584:-232.448,-21.9752,0	1/1:216:0,216:0:0:216:7707:-693.654,-65.0225,0	1/1:160:0,160:0:0:160:5722:-515.095,-48.1648,0	1/1:135:0,131:0:0:131:4639:-417.3,-39.4349,0	1/1:147:0,147:0:0:147:5260:-473.483,-44.2514,0	1/1:76:0,76:0:0:76:2719:-244.947,-22.8783,0	0/1:73:39,34:39:1385:34:1216:-87.7714,0,-102.972	0/1:78:37,41:37:1308:41:1448:-107.133,0,-94.5384	1/1:106:0,106:0:0:106:3795:-341.691,-31.9092,0	1/1:89:0,89:0:0:89:3197:-287.927,-26.7917,0	1/1:61:1,60:1:36:60:2156:-190.709,-14.7646,0	1/1:99:0,99:0:0:99:3539:-318.716,-29.802,0	1/1:76:1,75:1:36:75:2660:-236.028,-19.28,0	0/1:53:28,25:28:1004:25:875:-63.11,0,-74.7189	1/1:270:0,269:0:0:269:9579:-861.592,-80.9771,0	1/1:137:1,136:1:36:136:4847:-432.755,-37.6428,0	1/1:194:0,194:0:0:194:6934:-624.1,-58.3998,0	1/1:114:0,114:0:0:114:4061:-365.531,-34.3174,0	1/1:132:0,132:0:0:132:4716:-424.576,-39.736,0	1/1:49:0,49:0:0:49:1726:-155.623,-14.7505,0	0/1:303:142,160:142:5039:160:5720:-423.768,0,-362.477	1/1:167:0,167:0:0:167:5976:-537.93,-50.272,0	1/1:33:0,32:0:0:32:1136:-102.188,-9.63296,0	1/1:303:0,303:0:0:303:10819:-973.543,-91.2121,0	1/1:106:2,104:2:72:104:3715:-327.61,-25.0725,0	1/1:127:0,127:0:0:127:4543:-409.017,-38.2308,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:13:0,13:0:0:13:464:-42.0798,-3.91339,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:205:0,205:0:0:205:7334:-660.093,-61.7112,0	1/1:136:0,136:0:0:136:4862:-437.689,-40.9401,0	0/1:73:37,36:37:1317:36:1292:-94.6086,0,-96.8188	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:124:57,67:57:2025:67:2383:-177.4,0,-145.193	0/1:48:28,20:28:1004:20:716:-50.3137,0,-76.2264	1/1:161:0,161:0:0:161:5692:-511.908,-48.4658,0	1/1:85:0,85:0:0:85:3030:-272.727,-25.5876,0	1/1:61:0,61:0:0:61:2183:-196.734,-18.3628,0	1/1:141:0,141:0:0:141:5002:-450.325,-42.4452,0	1/1:113:0,113:0:0:113:4027:-362.62,-34.0164,0	1/1:222:0,222:0:0:222:7932:-713.839,-66.8287,0	1/1:104:0,104:0:0:104:3728:-335.719,-31.3071,0	0/1:161:77,84:77:2760:84:2977:-219.434,0,-200.176	1/1:225:0,224:0:0:224:7974:-717.227,-67.4307,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:111:62,49:62:2224:49:1756:-124.866,0,-167.01	1/1:64:0,64:0:0:64:2291:-206.45,-19.2659,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:85:38,46:38:1337:46:1628:-121.155,0,-94.9818	0/1:52:27,25:27:956:25:896:-65.3064,0,-70.7022	0/1:9:3,6:3:108:6:216:-17.0803,0,-7.3659	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	1/1:98:0,98:0:0:98:3499:-315.068,-29.5009,0	1/1:118:0,118:0:0:118:4196:-377.801,-35.5215,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:219:0,218:0:0:218:7810:-702.278,-65.6245,0	1/1:170:0,170:0:0:170:6068:-544.786,-51.1751,0	1/1:80:3,77:3:108:77:2763:-238.833,-14.0072,0	1/1:37:0,37:0:0:37:1316:-118.721,-11.1381,0	1/1:165:5,160:5:180:160:5740:-500.13,-33.1179,0	0/1:32:20,12:20:720:12:428:-29.2258,0,-55.4925	1/1:43:2,41:2:72:41:1452:-124.136,-6.10757,0	1/1:81:1,80:1:36:80:2856:-253.488,-20.7852,0	0/1:89:41,48:41:1457:48:1722:-128.453,0,-104.632	1/1:26:0,26:0:0:26:932:-84.1985,-7.82678,0	1/1:97:0,97:0:0:97:3456:-311.227,-29.1999,0	1/1:92:0,92:0:0:92:3278:-295.225,-27.6948,0	1/1:205:0,205:0:0:205:7250:-652.491,-61.7112,0	1/1:181:0,181:0:0:181:6480:-583.282,-54.4864,0	0/1:164:68,96:68:2409:96:3429:-259.446,0,-167.697	0/1:77:43,34:43:1509:34:1201:-85.2143,0,-112.919	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:78:0,78:0:0:78:2782:-250.622,-23.4803,0	1/1:184:0,184:0:0:184:6608:-594.696,-55.3895,0	1/1:242:0,242:0:0:242:8642:-777.748,-72.8493,0	1/1:109:0,109:0:0:109:3892:-350.451,-32.8123,0	0/1:85:48,37:48:1694:37:1332:-94.5948,0,-127.155	0/1:112:58,54:58:2076:54:1914:-138.818,0,-153.395	0/1:133:54,79:54:1927:79:2827:-214.623,0,-133.668	1/1:38:0,38:0:0:38:1368:-123.416,-11.4391,0	1/1:90:0,90:0:0:90:3194:-287.684,-27.0927,0	1/1:91:0,91:0:0:91:3249:-292.627,-27.3937,0	0/1:75:37,38:37:1291:38:1368:-100.844,0,-93.9092	0/1:87:51,36:51:1817:36:1296:-90.7497,0,-137.62	0/1:80:58,22:58:2075:22:792:-47.5233,0,-162.937	1/1:122:0,122:0:0:122:4351:-391.758,-36.7257,0	1/1:89:0,89:0:0:89:3170:-285.438,-26.7917,0
chr03	3844031	.	A	G	335106	PASS	AB=0.669528;ABP=759.139;AC=162;AF=0.861702;AN=188;AO=12950;CIGAR=1X;DP=13972;DPB=13972;DPRA=0;EPP=28114.9;EPPR=2209.23;GTI=2;LEN=1;MEANALT=1.06383;MQM=45.417;MQMR=59.9183;NS=94;NUMALT=1;ODDS=10.7484;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=456951;QR=35987;RO=1016;RPL=7488;RPP=691.288;RPPR=2157.42;RPR=5462;RUN=1;SAF=7489;SAP=692.647;SAR=5461;SRF=6;SRP=2157.42;SRR=1010;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:20,24:20:686:24:844:-58.7421,0,-48.8129	0/1:162:28,134:28:990:134:4783:-327.183,0,-40.6458	0/1:258:100,158:100:3553:158:5555:-398.908,0,-242.313	1/1:349:0,349:0:0:349:12291:-1063.74,-105.059,0	1/1:35:0,35:0:0:35:1240:-105.309,-10.5361,0	1/1:80:0,80:0:0:80:2837:-234.073,-24.0824,0	1/1:137:0,137:0:0:137:4767:-416.984,-41.2411,0	1/1:250:0,250:0:0:250:8817:-716.683,-75.2575,0	1/1:127:0,127:0:0:127:4463:-375.133,-38.2308,0	1/1:203:1,202:1:36:202:7137:-603.508,-57.526,0	1/1:126:0,126:0:0:126:4393:-376.413,-37.9298,0	0/1:122:38,84:38:1342:84:2929:-211.797,0,-84.3529	0/1:114:40,74:40:1418:74:2606:-187.248,0,-93.5985	1/1:166:0,166:0:0:166:5850:-491.293,-49.971,0	1/1:174:0,174:0:0:174:6169:-531.493,-52.3792,0	1/1:128:0,128:0:0:128:4522:-384.739,-38.5318,0	1/1:129:0,129:0:0:129:4559:-371.452,-38.8329,0	1/1:116:0,116:0:0:116:4114:-332.056,-34.9195,0	0/1:61:21,40:21:748:40:1395:-96.9153,0,-49.2825	1/1:403:0,403:0:0:403:14244:-1217.19,-121.315,0	1/1:362:0,362:0:0:362:12803:-1066.84,-108.973,0	1/1:142:0,142:0:0:142:4979:-428.376,-42.7463,0	1/1:149:1,148:1:36:148:5209:-451.631,-42.3866,0	1/1:120:0,120:0:0:120:4217:-352.249,-36.1236,0	1/1:71:0,70:0:0:70:2485:-218.137,-21.0721,0	0/1:256:73,183:73:2588:183:6457:-470.772,0,-156.104	1/1:348:0,348:0:0:348:12223:-1040.9,-104.758,0	1/1:69:0,69:0:0:69:2408:-202.28,-20.7711,0	1/1:370:0,370:0:0:370:13091:-1116.1,-111.381,0	1/1:266:2,262:2:72:262:9251:-758.805,-72.995,0	1/1:245:0,245:0:0:245:8648:-736.91,-73.7524,0	0/1:2:1,1:1:36:1:36:-2.6441,0,-2.99621	1/1:30:0,30:0:0:30:1072:-88.2855,-9.0309,0	1/1:6:0,6:0:0:6:216:-17.18,-1.80618,0	1/1:9:0,9:0:0:9:320:-27.182,-2.70927,0	0/1:7:1,6:1:36:6:207:-16.4246,0,-1.49106	1/1:387:1,386:1:36:386:13526:-1155.24,-112.909,0	1/1:219:0,219:0:0:219:7735:-642.463,-65.9256,0	0/1:59:21,38:21:731:38:1348:-89.4051,0,-48.3497	1/1:3:0,3:0:0:3:93:-8.34809,-0.90309,0	0/1:190:63,127:63:2239:127:4468:-322.56,0,-144.578	0/1:56:15,41:15:536:41:1416:-101.81,0,-31.7171	1/1:170:0,170:0:0:170:5956:-505.586,-51.1751,0	1/1:172:0,172:0:0:172:6073:-517.968,-51.7772,0	1/1:149:0,149:0:0:149:5243:-444.527,-44.8535,0	1/1:113:0,113:0:0:113:4014:-345.856,-34.0164,0	1/1:169:0,169:0:0:169:5964:-491.6,-50.8741,0	1/1:265:0,265:0:0:265:9343:-802.376,-79.773,0	1/1:165:0,165:0:0:165:5839:-504.151,-49.67,0	0/1:170:45,125:45:1607:125:4409:-325.167,0,-93.7443	1/1:214:1,213:1:36:213:7578:-633.643,-60.8221,0	1/1:11:0,11:0:0:11:377:-30.9176,-3.31133,0	0/1:124:33,91:33:1165:91:3242:-230.043,0,-67.8273	1/1:121:1,120:1:36:120:4196:-362.788,-32.8354,0	1/1:26:0,26:0:0:26:932:-78.3931,-7.82678,0	0/1:163:73,90:73:2595:90:3151:-215.633,0,-184.731	0/1:48:26,21:26:900:21:733:-47.9918,0,-66.8279	1/1:3:0,3:0:0:3:108:-9.79587,-0.90309,0	1/1:22:0,22:0:0:22:788:-65.8435,-6.62266,0	1/1:128:1,127:1:36:127:4502:-378.764,-34.9336,0	1/1:177:0,177:0:0:177:6210:-530.607,-53.2823,0	1/1:6:0,6:0:0:6:216:-18.0601,-1.80618,0	1/1:312:0,312:0:0:312:11087:-935.12,-93.9214,0	1/1:229:0,228:0:0:228:8059:-683.766,-68.6348,0	1/1:132:3,129:3:108:129:4565:-372.551,-29.684,0	1/1:111:0,111:0:0:111:3912:-336.258,-33.4143,0	1/1:272:3,269:3:108:269:9540:-813.743,-71.8192,0	0/1:129:59,70:59:2091:70:2476:-172.649,0,-149.627	1/1:81:2,79:2:72:79:2799:-230.972,-17.5467,0	1/1:143:0,143:0:0:143:5048:-418.717,-43.0473,0	0/1:103:27,76:27:963:76:2699:-195.844,0,-55.9798	1/1:49:0,49:0:0:49:1718:-149.397,-14.7505,0	1/1:153:0,153:0:0:153:5415:-453.296,-46.0576,0	1/1:158:0,158:0:0:158:5561:-469.207,-47.5627,0	1/1:244:0,244:0:0:244:8625:-708.047,-73.4513,0	1/1:298:1,297:1:36:297:10475:-896.973,-86.1087,0	0/1:82:42,40:42:1486:40:1436:-93.6517,0,-109.349	0/1:148:34,113:34:1200:113:4001:-282.195,0,-63.8387	1/1:42:0,42:0:0:42:1499:-117.79,-12.6433,0	1/1:178:0,178:0:0:178:6285:-537.363,-53.5833,0	1/1:204:0,204:0:0:204:7236:-601.891,-61.4101,0	1/1:309:0,309:0:0:309:10925:-939.416,-93.0183,0	1/1:164:0,164:0:0:164:5792:-492.453,-49.3689,0	0/1:111:34,77:34:1177:77:2732:-202.613,0,-72.8177	0/1:128:38,90:38:1347:90:3174:-229.105,0,-82.9976	0/1:211:65,146:65:2320:146:5175:-380.264,0,-145.543	1/1:50:0,50:0:0:50:1788:-144.576,-15.0515,0	1/1:158:0,158:0:0:158:5494:-455.291,-47.5627,0	1/1:128:0,128:0:0:128:4531:-381.785,-38.5318,0	0/1:83:27,56:27:950:56:1963:-140.503,0,-60.8279	0/1:106:31,75:31:1108:75:2639:-193.016,0,-68.1218	0/1:92:44,48:44:1563:48:1703:-119.067,0,-113.266	1/1:184:0,184:0:0:184:6496:-553.088,-55.3895,0	1/1:214:0,214:0:0:214:7506:-653.028,-64.4204,0
chr03	3904483	.	C	A	22323.3	PASS	AB=0.48636;ABP=7.51225;AC=27;AF=0.143617;AN=188;AO=1364;CIGAR=1X;DP=10691;DPB=10691;DPRA=0.967585;EPP=2964.9;EPPR=20256.3;GTI=3;LEN=1;MEANALT=1;MQM=54.8218;MQMR=59.9641;NS=94;NUMALT=1;ODDS=1.64037;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48638;QR=332731;RO=9327;RPL=0;RPP=2964.9;RPPR=20256.3;RPR=1364;RUN=1;SAF=0;SAP=2964.9;SAR=1364;SRF=0;SRP=20256.3;SRR=9327;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:9,11:9:320:11:392:-29.4609,0,-23.1218	0/1:121:73,48:73:2609:48:1701:-116.798,0,-198.632	0/1:210:109,101:109:3897:101:3596:-257.852,0,-287.703	0/0:329:329,0:329:11732:0:0:0,-99.0389,-1055.73	0/0:46:46,0:46:1621:0:0:0,-13.8474,-146.177	0/0:56:56,0:56:1985:0:0:0,-16.8577,-178.912	0/0:107:107,0:107:3800:0:0:0,-32.2102,-342.187	0/0:201:201,0:201:7140:0:0:0,-60.507,-642.659	0/0:74:74,0:74:2625:0:0:0,-22.2762,-236.497	0/0:117:117,0:117:4184:0:0:0,-35.2205,-376.742	0/0:75:75,0:75:2669:0:0:0,-22.5772,-240.45	0/1:74:39,35:39:1364:35:1256:-90.4473,0,-100.779	0/1:87:52,35:52:1860:35:1252:-86.5795,0,-141.487	0/0:67:67,0:67:2384:0:0:0,-20.169,-214.804	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.768	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/0:87:87,0:87:3097:0:0:0,-26.1896,-278.957	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:34:18,16:18:648:16:576:-41.1083,0,-48.4169	0/0:317:317,0:317:11277:0:0:0,-95.4265,-1014.11	0/0:174:174,0:174:6213:0:0:0,-52.3792,-559.267	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/0:125:125,0:125:4469:0:0:0,-37.6287,-402.292	0/0:134:134,0:134:4816:0:0:0,-40.338,-433.586	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	0/1:365:165,200:165:5905:200:7147:-531.339,0,-421.682	0/0:223:223,0:223:7948:0:0:0,-67.1297,-715.343	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:314:314,0:314:11210:0:0:0,-94.5234,-1008.78	0/0:115:114,1:114:4070:1:36:0,-31.0253,-362.893	0/0:128:128,0:128:4588:0:0:0,-38.5318,-413.08	0/1:5:4,1:4:144:1:36:-1.94934,0,-11.8037	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:6:5,1:5:180:1:36:-1.78839,0,-14.7459	0/0:249:249,0:249:8792:0:0:0,-74.9565,-791.275	0/0:185:185,0:185:6620:0:0:0,-55.6905,-595.877	0/1:79:46,33:46:1640:33:1188:-82.6386,0,-124.103	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:157:104,53:104:3728:53:1896:-123.171,0,-288.456	0/1:42:22,20:22:783:20:720:-52.3871,0,-58.1497	0/0:129:128,1:128:4575:1:36:0,-35.2397,-408.322	0/0:98:98,0:98:3494:0:0:0,-29.5009,-314.671	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:82:81,1:81:2891:1:32:0,-21.4855,-257.227	0/0:186:186,0:186:6663:0:0:0,-55.9916,-599.746	0/0:200:200,0:200:7160:0:0:0,-60.206,-644.452	0/0:152:152,0:152:5399:0:0:0,-45.7566,-486.04	0/1:251:116,135:116:4128:135:4811:-356.938,0,-296.148	0/0:167:167,0:167:5930:0:0:0,-50.272,-533.752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:149:76,73:76:2724:73:2624:-191.008,0,-200.55	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:191:116,75:116:4128:75:2655:-181.01,0,-314.15	0/1:45:21,24:21:741:24:860:-63.9686,0,-53.3788	0/1:11:9,2:9:316:2:68:-3.14504,0,-25.4675	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.438	0/0:117:115,2:115:4132:2:72:0,-28.3887,-365.231	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:258:258,0:258:9211:0:0:0,-77.6657,-828.956	0/0:219:218,1:218:7800:1:36:0,-62.3273,-698.43	0/0:83:81,2:81:2908:2:72:0,-18.1585,-255.128	0/0:160:160,0:160:5728:0:0:0,-48.1648,-515.637	0/0:255:254,1:254:9067:1:36:0,-73.167,-812.411	0/1:87:38,49:38:1364:49:1756:-131.85,0,-96.8711	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:99:99,0:99:3521:0:0:0,-29.802,-317.1	0/1:70:34,36:34:1203:36:1292:-95.2486,0,-87.4805	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:117:117,0:117:4193:0:0:0,-35.2205,-377.549	0/0:65:65,0:65:2306:0:0:0,-19.5669,-207.798	0/0:127:127,0:127:4514:0:0:0,-38.2308,-406.428	0/0:246:246,0:246:8775:0:0:0,-74.0534,-789.74	0/1:111:32,79:32:1140:79:2800:-218.417,0,-69.4949	0/1:136:78,58:78:2785:58:2071:-145.53,0,-209.949	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:161:161,0:161:5734:0:0:0,-48.4658,-516.176	0/0:187:187,0:187:6640:0:0:0,-56.2926,-597.671	0/0:207:207,0:207:7359:0:0:0,-62.3132,-662.354	0/0:108:108,0:108:3867:0:0:0,-32.5112,-348.224	0/1:73:47,26:47:1675:26:932:-62.1631,0,-129.061	0/1:79:38,41:38:1349:41:1476:-109.089,0,-97.9269	0/1:165:77,88:77:2736:88:3121:-229.591,0,-196.811	0/0:48:48,0:48:1719:0:0:0,-14.4494,-154.995	0/0:107:107,0:107:3809:0:0:0,-32.2102,-343.008	0/0:92:92,0:92:3266:0:0:0,-27.6948,-294.16	0/1:33:20,13:20:716:13:453:-31.11,0,-54.8337	0/1:118:60,58:60:2136:58:2048:-148.559,0,-156.984	0/1:67:23,44:23:828:44:1555:-119.8,0,-54.6751	0/0:209:209,0:209:7469:0:0:0,-62.9153,-672.254	0/0:126:126,0:126:4500:0:0:0,-37.9298,-404.799
chr03	3904503	.	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chr03	3915858	.	G	A	9893.18	PASS	AB=0.445074;ABP=39.9838;AC=27;AF=0.145161;AN=186;AO=637;CIGAR=1X;DP=5230;DPB=5230;DPRA=0.968773;EPP=1386.24;EPPR=9972.24;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9915;NS=93;NUMALT=1;ODDS=1.17032;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22825;QR=164023;RO=4591;RPL=0;RPP=1386.24;RPPR=9972.24;RPR=637;RUN=1;SAF=637;SAP=1386.24;SAR=0;SRF=4591;SRP=9972.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:12,21:12:428:21:729:-55.9941,0,-28.9248	0/1:45:30,15:30:1076:15:540:-35.3902,0,-83.6065	0/1:83:42,41:42:1493:41:1457:-106.438,0,-109.677	0/0:129:129,0:129:4617:0:0:0,-38.8329,-415.692	0/0:54:54,0:54:1905:0:0:0,-16.2556,-171.726	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.784	0/0:82:82,0:82:2937:0:0:0,-24.6845,-264.562	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:47:47,0:47:1657:0:0:0,-14.1484,-149.416	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:79:44,35:44:1580:35:1260:-89.9241,0,-118.71	0/1:55:30,25:30:1065:25:896:-64.4037,0,-79.6031	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9196	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/0:57:56,1:56:2008:1:36:0,-13.5604,-177.395	0/0:146:146,0:146:5206:0:0:0,-43.9504,-468.677	0/0:64:63,0:63:2256:0:0:0,-18.9649,-203.012	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:14:14,0:14:474:0:0:0,-4.21442,-42.9797	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:124:69,55:69:2484:55:1961:-139.436,0,-186.485	0/0:94:94,0:94:3331:0:0:0,-28.2968,-299.991	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:176:176,0:176:6305:0:0:0,-52.9813,-567.54	0/0:101:99,2:99:3537:2:72:0,-23.5673,-311.701	0/0:114:114,0:114:4077:0:0:0,-34.3174,-367.115	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:147:147,0:147:5271:0:0:0,-44.2514,-474.524	0/0:99:99,0:99:3534:0:0:0,-29.802,-318.266	0/1:46:27,19:27:972:19:680:-47.6818,0,-73.9505	.:.:.:.:.:.:.:.	0/1:45:31,14:31:1116:14:504:-32.1517,0,-87.2053	0/1:41:28,13:28:1000:13:468:-30.1174,0,-77.9731	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.129	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:80:79,0:79:2825:0:0:0,-23.7814,-254.206	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.653	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:48:27,21:27:934:21:756:-53.9178,0,-69.9193	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:70:44,26:44:1569:26:936:-63.4874,0,-120.428	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:48:28,20:28:1000:20:720:-50.6793,0,-75.8659	0/1:17:13,4:13:468:4:140:-7.82707,0,-37.3421	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:66:66,0:66:2338:0:0:0,-19.868,-210.676	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.079	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:121:121,0:121:4322:0:0:0,-36.4246,-389.153	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/0:48:47,1:47:1692:1:36:0,-10.8512,-148.969	0/0:85:82,3:82:2902:3:108:0,-15.5124,-251.339	0/1:75:46,29:46:1656:29:1044:-71.6976,0,-126.751	0/0:31:30,1:30:1068:1:32:0,-6.13262,-93.2327	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:39:21,18:21:756:18:648:-46.9117,0,-56.6271	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:85:84,1:84:2990:1:36:0,-21.9893,-265.731	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:130:130,0:130:4548:0:0:0,-39.1339,-409.483	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:60:33,27:33:1184:27:968:-69.3756,0,-88.8019	0/1:71:38,33:38:1364:33:1176:-84.7741,0,-101.688	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:74:74,0:74:2633:0:0:0,-22.2762,-237.216	0/0:73:73,0:73:2564:0:0:0,-21.9752,-231.005	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:53:33,20:33:1188:20:720:-49.1742,0,-91.274	0/1:36:18,18:18:648:18:644:-47.4535,0,-47.8148	0/1:119:57,62:57:2048:62:2232:-165.321,0,-148.769	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/0:75:75,0:75:2685:0:0:0,-22.5772,-241.893	0/1:40:24,16:24:864:16:570:-39.5912,0,-66.0414	0/1:88:47,41:47:1673:41:1476:-106.646,0,-124.365	0/1:48:16,32:16:576:32:1152:-89.5407,0,-37.7255	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734
chr03	3915861	.	T	G	100787	PASS	AB=0.555237;ABP=39.9534;AC=159;AF=0.854839;AN=186;AO=4554;CIGAR=1X;DP=5186;DPB=5186;DPRA=0;EPP=9891.9;EPPR=1364.52;GTI=0;LEN=1;MEANALT=1.05376;MQM=59.9833;MQMR=60;NS=93;NUMALT=1;ODDS=1.03892;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162921;QR=22443;RO=627;RPL=0;RPP=9891.9;RPPR=1364.52;RPR=4554;RUN=1;SAF=4554;SAP=9891.9;SAR=0;SRF=627;SRP=1364.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:20,12:20:720:12:428:-29.2258,0,-55.4958	0/1:47:16,31:16:576:31:1116:-86.6033,0,-38.0266	0/1:81:40,41:40:1440:41:1468:-108.033,0,-105.514	1/1:130:0,130:0:0:130:4676:-420.999,-39.1339,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:23:0,23:0:0:23:815:-73.6714,-6.92369,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:80:0,79:0:0:79:2840:-255.478,-23.7814,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:25:0,25:0:0:25:879:-79.4268,-7.52575,0	0/1:79:35,44:35:1240:44:1576:-118.35,0,-88.1231	0/1:54:24,30:24:864:30:1076:-80.8972,0,-61.8269	1/1:49:0,48:0:0:48:1720:-154.726,-14.4494,0	1/1:54:0,54:0:0:54:1923:-173.344,-16.2556,0	1/1:38:0,38:0:0:38:1368:-123.193,-11.4391,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:29:0,29:0:0:29:1037:-93.6426,-8.72987,0	0/1:23:9,14:9:320:14:496:-38.0506,0,-22.2187	1/1:56:1,55:1:36:55:1976:-174.516,-13.2594,0	1/1:146:0,146:0:0:146:5197:-467.871,-43.9504,0	1/1:65:0,65:0:0:65:2321:-209.15,-19.567,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:57:0,57:0:0:57:2035:-183.422,-17.1587,0	0/1:122:54,68:54:1920:68:2436:-182.77,0,-136.351	1/1:95:0,95:0:0:95:3393:-305.57,-28.5979,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:175:0,175:0:0:175:6259:-563.403,-52.6803,0	1/1:99:1,98:1:36:98:3516:-313.051,-26.2037,0	1/1:113:0,113:0:0:113:4033:-363.157,-34.0164,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	1/1:146:0,146:0:0:146:5227:-470.567,-43.9504,0	1/1:97:0,97:0:0:97:3465:-312.062,-29.1999,0	0/1:45:18,27:18:644:27:968:-73.891,0,-44.7442	.:.:.:.:.:.:.:.	0/1:44:14,29:14:500:29:1040:-80.6103,0,-32.0322	0/1:40:13,27:13:460:27:968:-75.3962,0,-29.6942	1/1:70:0,70:0:0:70:2493:-224.624,-21.0721,0	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	1/1:81:0,81:0:0:81:2884:-259.797,-24.3834,0	1/1:96:0,96:0:0:96:3445:-310.262,-28.8989,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:47:21,26:21:756:26:928:-69.6898,0,-54.2188	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:69:25,44:25:900:44:1584:-122.08,0,-60.5499	1/1:34:0,34:0:0:34:1215:-109.656,-10.235,0	1/1:17:0,17:0:0:17:610:-55.2328,-5.11751,0	0/1:45:19,26:19:684:26:927:-70.2017,0,-48.344	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:124:0,124:0:0:124:4456:-401.209,-37.3277,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:119:0,119:0:0:119:4268:-384.297,-35.8226,0	1/1:66:0,65:0:0:65:2332:-209.78,-19.567,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:49:1,48:1:36:48:1700:-149.688,-11.1522,0	1/1:85:3,82:3:108:82:2917:-252.689,-15.5124,0	0/1:76:30,46:30:1068:46:1648:-125.73,0,-73.5538	1/1:32:1,31:1:36:31:1112:-96.7931,-6.03469,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:39:18,21:18:648:21:756:-56.6271,0,-46.9117	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:83:1,82:1:36:82:2940:-261.236,-21.3872,0	1/1:40:1,39:1:36:39:1376:-120.538,-8.44293,0	1/1:131:0,131:0:0:131:4676:-420.998,-39.4349,0	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	0/1:60:27,33:27:963:33:1172:-87.7211,0,-68.9241	0/1:70:32,38:32:1140:38:1344:-100.187,0,-81.8371	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:74:0,74:0:0:74:2641:-237.921,-22.2762,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:53:20,33:20:716:33:1175:-90.1024,0,-48.8131	0/1:35:17,18:17:612:18:648:-48.1158,0,-44.8774	0/1:115:60,55:60:2148:55:1969:-142.865,0,-158.969	1/1:21:0,21:0:0:21:743:-67.1933,-6.32163,0	1/1:69:0,69:0:0:69:2449:-220.664,-20.7711,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	0/1:40:15,24:15:540:24:864:-66.04,0,-36.8927	0/1:88:41,47:41:1468:47:1684:-125.356,0,-105.925	0/1:48:32,16:32:1144:16:572:-37.364,0,-88.8201	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0
chr03	3915866	.	C	T	99889	PASS	AB=0.555076;ABP=39.6064;AC=159;AF=0.854839;AN=186;AO=4524;CIGAR=1X;DP=5156;DPB=5156;DPRA=0;EPP=9809.39;EPPR=1366.71;GTI=0;LEN=1;MEANALT=1;MQM=59.9828;MQMR=60;NS=93;NUMALT=1;ODDS=1.22186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161564;QR=22595;RO=632;RPL=2;RPP=9809.39;RPPR=1366.71;RPR=4522;RUN=1;SAF=4524;SAP=9826.75;SAR=0;SRF=632;SRP=1375.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:21,12:21:752:12:432:-29.2872,0,-58.0723	0/1:46:15,31:15:531:31:1112:-86.544,0,-34.2745	0/1:82:39,43:39:1396:43:1528:-113.129,0,-101.255	1/1:126:0,126:0:0:126:4496:-404.808,-37.9298,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:81:0,81:0:0:81:2893:-260.605,-24.3834,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:47:0,47:0:0:47:1662:-149.863,-14.1484,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:79:35,44:35:1251:44:1576:-118.35,0,-89.1129	0/1:56:25,31:25:896:31:1112:-83.5337,0,-64.1027	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:54:0,54:0:0:54:1927:-173.704,-16.2556,0	1/1:39:0,39:0:0:39:1381:-124.577,-11.7402,0	1/1:29:0,29:0:0:29:1024:-92.4726,-8.72987,0	1/1:29:0,29:0:0:29:1035:-93.4615,-8.72987,0	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	1/1:56:1,55:1:36:55:1976:-174.516,-13.2594,0	1/1:144:1,143:1:36:143:5084:-454.106,-39.75,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:57:0,57:0:0:57:2024:-182.43,-17.1587,0	0/1:122:55,67:55:1976:67:2408:-180.25,0,-141.389	1/1:92:0,92:0:0:92:3261:-293.695,-27.6948,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:175:0,175:0:0:175:6284:-565.651,-52.6803,0	1/1:97:2,95:2:72:95:3353:-295.149,-22.3632,0	1/1:110:0,110:0:0:110:3914:-352.452,-33.1133,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	1/1:145:0,145:0:0:145:5177:-466.069,-43.6494,0	1/1:99:0,99:0:0:99:3521:-317.1,-29.802,0	0/1:46:19,27:19:676:27:968:-73.59,0,-47.3206	.:.:.:.:.:.:.:.	0/1:45:14,31:14:504:31:1099:-85.6731,0,-32.1517	0/1:39:13,26:13:464:26:936:-72.8193,0,-30.3573	1/1:67:0,67:0:0:67:2385:-214.907,-20.169,0	1/1:33:0,33:0:0:33:1170:-105.606,-9.93399,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:81:0,81:0:0:81:2869:-258.447,-24.3834,0	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	1/1:65:1,64:1:36:64:2300:-203.662,-15.9687,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:45:19,26:19:680:26:917:-69.2983,0,-47.9828	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:69:26,43:26:914:43:1533:-117.49,0,-61.8036	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:47:20,27:20:716:27:967:-73.1987,0,-50.6193	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:11:0,11:0:0:11:377:-34.2579,-3.31133,0	1/1:65:2,63:2:72:63:2256:-196.466,-12.7302,0	1/1:126:0,126:0:0:126:4524:-407.323,-37.9298,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:119:0,119:0:0:119:4265:-384.026,-35.8226,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:47:2,45:2:72:45:1616:-138.893,-7.31169,0	1/1:85:3,82:3:104:82:2919:-253.243,-15.8847,0	0/1:73:28,45:28:991:45:1612:-123.395,0,-67.5283	1/1:30:1,29:1:36:29:1040:-90.3161,-5.43263,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:38:18,20:18:644:20:720:-53.6896,0,-46.8515	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:84:1,83:1:36:83:2957:-262.764,-21.6882,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	1/1:129:0,129:0:0:129:4595:-413.715,-38.8329,0	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	0/1:57:26,31:26:928:31:1107:-82.7814,0,-66.6795	0/1:72:34,38:34:1212:38:1356:-100.666,0,-87.7122	1/1:11:0,11:0:0:11:366:-33.2585,-3.31133,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:74:0,74:0:0:74:2633:-237.216,-22.2762,0	1/1:73:0,73:0:0:73:2586:-232.973,-21.9752,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:53:20,33:20:716:33:1184:-90.9137,0,-48.8131	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/1:116:60,56:60:2148:56:2005:-145.803,0,-158.668	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:72:0,72:0:0:72:2575:-231.999,-21.6742,0	0/1:40:16,24:16:576:24:860:-65.6806,0,-40.1338	0/1:86:40,46:40:1432:46:1644:-122.36,0,-103.289	0/1:46:30,16:30:1072:16:576:-38.3276,0,-82.9451	1/1:76:0,76:0:0:76:2694:-242.702,-22.8783,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0
chr03	3964561	.	GATCTC	AATCTC,AATATT	176153	PASS	AB=0.455545,0.543538;ABP=40.4647,38.9361;AC=159,29;AF=0.845745,0.154255;AN=188;AO=6774,1213;CIGAR=1X5M,1X2M1X1M1X;DP=8000;DPB=8000;DPRA=7.80938,0.962369;EPP=14686.5,2637.01;EPPR=0;GTI=1;LEN=1,6;MEANALT=1.52688,2.08108;MQM=59.9872,59.7972;MQMR=0;NS=94;NUMALT=2;ODDS=3.97379;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=241716,42014;QR=0;RO=0;RPL=0,0;RPP=14712.6,2637.01;RPPR=0;RPR=6774,1213;RUN=1,1;SAF=3,0;SAP=14686.5,2637.01;SAR=6771,1213;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:34:0,9,25:0:0:9,25:320,866:-96.7714,-70.6913,-67.982,-26.4331,0,-18.9073	1/2:167:0,80,87:0:0:80,87:2826,3016:-475.63,-245.485,-221.402,-230.495,0,-204.305	1/2:79:0,39,40:0:0:39,40:1391,1374:-225.313,-111.915,-100.175,-113.748,0,-101.707	1/1:194:0,193,0:0:0:193,0:6915,0:-622.056,-58.0988,0,-622.056,-58.0988,-622.056	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/1:59:0,59,0:0:0:59,0:2097,0:-188.998,-17.7608,0,-188.998,-17.7608,-188.998	1/1:103:0,103,0:0:0:103,0:3674,0:-330.863,-31.0061,0,-330.863,-31.0061,-330.863	1/1:130:0,130,0:0:0:130,0:4646,0:-418.302,-39.1339,0,-418.302,-39.1339,-418.302	1/1:52:0,51,1:0:0:51,1:1794,31:-161.427,-15.3525,0,-158.94,-12.5541,-158.639	1/1:97:0,97,0:0:0:97,0:3473,0:-312.78,-29.1999,0,-312.78,-29.1999,-312.78	1/1:61:0,61,0:0:0:61,0:2175,0:-196.016,-18.3628,0,-196.016,-18.3628,-196.016	1/2:61:0,27,34:0:0:27,34:964,1168:-173.787,-95.1887,-87.0609,-78.949,0,-68.714	1/2:67:0,23,44:0:0:23,44:815,1527:-190.871,-124.475,-117.552,-66.7471,0,-53.5018	1/1:76:0,76,0:0:0:76,0:2712,0:-244.255,-22.8783,0,-244.255,-22.8783,-244.255	1/1:57:0,57,0:0:0:57,0:2036,0:-183.512,-17.1587,0,-183.512,-17.1587,-183.512	1/1:80:0,79,0:0:0:79,0:2818,0:-253.499,-23.7814,0,-253.499,-23.7814,-253.499	1/1:67:0,66,0:0:0:66,0:2346,0:-211.039,-19.868,0,-211.039,-19.868,-211.039	1/1:50:0,50,0:0:0:50,0:1768,0:-159.401,-15.0515,0,-159.401,-15.0515,-159.401	1/2:54:0,20,34:0:0:20,34:712,1198:-155.923,-97.8916,-91.871,-58.3861,0,-48.151	1/1:114:0,114,0:0:0:114,0:4088,0:-368.105,-34.3174,0,-368.105,-34.3174,-368.105	1/1:113:0,113,0:0:0:113,0:4047,0:-364.417,-34.0164,0,-364.417,-34.0164,-364.417	1/1:81:0,81,0:0:0:81,0:2908,0:-261.955,-24.3834,0,-261.955,-24.3834,-261.955	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/1:60:0,60,0:0:0:60,0:2134,0:-192.327,-18.0618,0,-192.327,-18.0618,-192.327	1/1:45:0,45,0:0:0:45,0:1611,0:-145.279,-13.5464,0,-145.279,-13.5464,-145.279	1/2:152:0,77,75:0:0:77,75:2745,2583:-433.904,-210.143,-186.964,-224.112,0,-201.535	1/1:169:0,169,0:0:0:169,0:6001,0:-540.197,-50.8741,0,-540.197,-50.8741,-540.197	1/1:35:0,35,0:0:0:35,0:1256,0:-113.345,-10.5361,0,-113.345,-10.5361,-113.345	1/1:218:0,218,0:0:0:218,0:7767,0:-699.06,-65.6245,0,-699.06,-65.6245,-699.06	1/1:146:0,145,1:0:0:145,1:5157,35:-463.92,-43.6494,0,-461.073,-40.4518,-460.772	1/1:125:0,123,1:0:0:123,1:4364,36:-392.596,-37.0267,0,-389.658,-34.0693,-389.357	1/2:9:0,5,4:0:0:5,4:180,137:-26.1607,-11.4639,-9.95872,-15.0469,0,-13.8428	1/1:25:0,23,2:0:0:23,2:809,72:-72.7691,-6.92369,0,-66.8936,-0.689028,-66.2916	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:7:0,4,3:0:0:4,3:140,105:-20.2836,-8.893,-7.68888,-11.7405,0,-10.8374	1/1:192:0,191,0:0:0:191,0:6795,0:-611.264,-57.4967,0,-611.264,-57.4967,-611.264	1/1:187:0,186,0:0:0:186,0:6643,0:-597.469,-55.9916,0,-597.469,-55.9916,-597.469	1/2:82:0,38,44:0:0:38,44:1348,1544:-235.836,-126.008,-114.569,-110.181,0,-96.9358	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:120:0,62,58:0:0:62,58:2223,2010:-345.031,-163.713,-145.049,-181.67,0,-164.21	1/2:38:0,24,14:0:0:24,14:864,486:-110.362,-39.856,-32.6313,-70.8578,0,-66.6434	1/1:130:0,129,0:0:0:129,0:4600,0:-413.804,-38.8329,0,-413.804,-38.8329,-413.804	1/1:64:0,64,0:0:0:64,0:2283,0:-205.731,-19.2659,0,-205.731,-19.2659,-205.731	1/1:63:0,63,0:0:0:63,0:2252,0:-202.943,-18.9649,0,-202.943,-18.9649,-202.943	1/1:289:0,288,0:0:0:288,0:10306,0:-927.101,-86.6966,0,-927.101,-86.6966,-927.101	1/1:88:0,88,0:0:0:88,0:3139,0:-282.736,-26.4906,0,-282.736,-26.4906,-282.736	1/1:119:0,119,0:0:0:119,0:4254,0:-383.038,-35.8226,0,-383.038,-35.8226,-383.038	1/1:96:0,96,0:0:0:96,0:3416,0:-307.653,-28.8989,0,-307.653,-28.8989,-307.653	1/2:94:0,41,52:0:0:41,52:1461,1796:-265.104,-146.013,-133.671,-119.189,0,-103.536	1/1:138:0,137,0:0:0:137,0:4894,0:-440.381,-41.2411,0,-440.381,-41.2411,-440.381	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:108:0,51,57:0:0:51,57:1807,1978:-308.346,-161.138,-145.786,-147.558,0,-130.4	1/1:52:0,52,0:0:0:52,0:1831,0:-165.067,-15.6536,0,-165.067,-15.6536,-165.067	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/2:119:0,54,64:0:0:54,64:1940,2193:-336.316,-178.046,-161.791,-158.339,0,-139.073	1/2:29:0,14,15:0:0:14,15:504,521:-83.8332,-42.7032,-38.4888,-41.4837,0,-36.9682	2/2:11:0,0,11:0:0:0,11:0,391:-35.5261,-35.5261,-35.5261,-3.31133,-3.31133,0	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:68:0,68,0:0:0:68,0:2435,0:-219.405,-20.47,0,-219.405,-20.47,-219.405	1/2:99:0,43,56:0:0:43,56:1544,1951:-284.955,-159.001,-146.056,-126.309,0,-109.451	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:198:0,198,0:0:0:198,0:7015,0:-631.414,-59.6039,0,-631.414,-59.6039,-631.414	1/1:192:0,190,1:0:0:190,1:6778,35:-609.737,-57.1957,0,-606.889,-54.3529,-606.588	1/1:37:0,35,2:0:0:35,2:1256,68:-113.004,-10.5361,0,-107.489,-4.68023,-106.887	1/1:73:0,73,0:0:0:73,0:2588,0:-233.168,-21.9752,0,-233.168,-21.9752,-233.168	1/1:118:0,114,4:0:0:114,4:4084,134:-367.41,-34.3174,0,-356.559,-23.1304,-355.355	1/2:141:0,45,96:0:0:45,96:1620,3299:-400.192,-268.002,-254.456,-132.544,0,-103.645	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6759,-8.42884,0,-90.6759,-8.42884,-90.6759	1/1:74:0,74,0:0:0:74,0:2637,0:-237.576,-22.2762,0,-237.576,-22.2762,-237.576	1/2:79:0,37,42:0:0:37,42:1328,1451:-226.572,-118.24,-107.102,-108.684,0,-96.0409	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/1:93:0,93,0:0:0:93,0:3300,0:-297.219,-27.9958,0,-297.219,-27.9958,-297.219	1/1:40:0,40,0:0:0:40,0:1421,0:-128.185,-12.0412,0,-128.185,-12.0412,-128.185	1/1:224:0,223,0:0:0:223,0:7959,0:-715.973,-67.1297,0,-715.973,-67.1297,-715.973	1/1:116:0,116,0:0:0:116,0:4145,0:-373.232,-34.9195,0,-373.232,-34.9195,-373.232	1/2:79:0,44,35:0:0:44,35:1575,1219:-227.915,-99.4721,-86.2268,-128.796,0,-118.259	1/2:72:0,42,30:0:0:42,30:1499,1039:-206.999,-84.7887,-72.1455,-122.561,0,-113.53	1/1:33:0,33,0:0:0:33,0:1180,0:-106.508,-9.93399,0,-106.508,-9.93399,-106.508	1/1:94:0,94,0:0:0:94,0:3359,0:-302.526,-28.2968,0,-302.526,-28.2968,-302.526	1/1:65:0,65,0:0:0:65,0:2332,0:-210.14,-19.567,0,-210.14,-19.567,-210.14	1/1:210:0,210,0:0:0:210,0:7507,0:-675.673,-63.2163,0,-675.673,-63.2163,-675.673	1/1:71:0,68,3:0:0:68,3:2427,103:-218.342,-20.47,0,-209.979,-11.7633,-209.076	1/2:79:0,37,42:0:0:37,42:1311,1448:-224.771,-117.968,-106.829,-107.153,0,-94.5095	1/2:73:0,36,37:0:0:36,37:1292,1268:-208.678,-103.282,-92.4448,-105.747,0,-94.6086	1/2:135:0,62,73:0:0:62,73:2215,2540:-387.47,-206.873,-188.209,-180.95,0,-158.975	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/1:71:0,71,0:0:0:71,0:2548,0:-229.57,-21.3731,0,-229.57,-21.3731,-229.57	1/1:47:0,47,0:0:0:47,0:1680,0:-151.487,-14.1484,0,-151.487,-14.1484,-151.487	1/2:43:0,24,19:0:0:24,19:864,664:-124.869,-54.3656,-47.1409,-70.8578,0,-65.1383	1/2:90:0,30,60:0:0:30,60:1054,2083:-255.462,-169.673,-160.643,-86.1383,0,-68.0765	1/2:72:0,26,46:0:0:26,46:928,1611:-207.075,-131.418,-123.591,-76.0115,0,-62.1641	1/1:117:0,116,1:0:0:116,1:4150,34:-373.324,-34.9195,0,-370.567,-31.8216,-370.266	1/1:76:0,76,0:0:0:76,0:2716,0:-244.526,-22.8783,0,-244.526,-22.8783,-244.526
chr03	3996595	.	C	T	10069	PASS	AB=0.420039;ABP=89.4801;AC=28;AF=0.148936;AN=188;AO=662;CIGAR=1X;DP=5881;DPB=5881;DPRA=0.923891;EPP=1423.21;EPPR=11229.8;GTI=3;LEN=1;MEANALT=1;MQM=59.8157;MQMR=59.9822;NS=94;NUMALT=1;ODDS=0.512961;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23659;QR=185809;RO=5218;RPL=2;RPP=1423.21;RPPR=11221.1;RPR=660;RUN=1;SAF=0;SAP=1440.53;SAR=662;SRF=1;SRP=11325.1;SRR=5217;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:6,3:6:212:3:97:-6.33924,0,-16.7155	0/1:29:23,6:23:828:6:216:-11.0606,0,-66.1142	0/1:77:50,27:50:1788:27:944:-62.0907,0,-138.023	0/0:164:164,0:164:5842:0:0:0,-49.3689,-525.894	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:55:55,0:55:1921:0:0:0,-16.5566,-173.165	0/0:139:139,0:139:4919:0:0:0,-41.8432,-442.864	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.169	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.384	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.11	0/1:71:48,23:48:1724:23:828:-53.471,0,-134.072	0/1:62:40,22:40:1424:22:792:-52.9418,0,-109.794	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/0:43:43,0:43:1521:0:0:0,-12.9443,-137.18	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.658	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:30:29,0:29:1032:0:0:0,-8.72987,-92.8338	0/1:20:12,8:12:424:8:284:-19.8828,0,-32.4758	0/0:116:116,0:116:4163:0:0:0,-34.9195,-374.851	0/0:72:72,0:72:2555:0:0:0,-21.6742,-230.201	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/1:131:88,43:88:3136:43:1548:-100.178,0,-243.032	0/0:172:172,0:172:6117:0:0:0,-51.7772,-550.634	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:237:237,0:237:8435:0:0:0,-71.3441,-759.157	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/0:76:76,0:76:2691:0:0:0,-22.8783,-242.436	0/1:4:3,1:3:100:1:36:-2.39415,0,-8.12632	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/0:142:142,0:142:5046:0:0:0,-42.7463,-454.286	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.593	0/1:28:15,13:15:540:13:464:-33.6687,0,-40.5077	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:100:53,47:53:1883:47:1680:-121.384,0,-139.645	0/1:23:10,13:10:360:13:468:-35.5134,0,-25.8206	0/0:100:100,0:100:3538:0:0:0,-30.103,-318.631	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/0:57:57,0:57:1998:0:0:0,-17.1587,-180.09	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:98:98,0:98:3487:0:0:0,-29.5009,-314.042	0/0:125:125,0:125:4475:0:0:0,-37.6287,-402.919	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:89:49,40:49:1738:40:1422:-101.48,0,-129.911	0/0:66:66,0:66:2338:0:0:0,-19.868,-210.679	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/1:86:43,43:43:1548:43:1536:-112.645,0,-113.724	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:124:88,36:88:3122:36:1292:-79.256,0,-243.88	0/1:21:13,8:13:464:8:288:-19.9171,0,-35.7759	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.371	0/1:59:33,26:33:1155:26:936:-66.7987,0,-86.4921	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:170:170,0:170:6062:0:0:0,-51.1751,-545.315	0/0:178:176,2:176:6261:2:64:0,-47.5101,-557.514	0/0:56:51,5:51:1819:5:180:0,-0.305615,-147.438	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.918	0/0:88:88,0:88:3122:0:0:0,-26.4906,-281.199	0/1:102:50,52:50:1788:52:1864:-137.334,0,-130.498	0/0:47:46,1:46:1616:1:36:0,-10.5501,-142.128	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/1:34:20,14:20:720:14:487:-33.9242,0,-54.8938	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:105:105,0:105:3739:0:0:0,-31.6081,-336.712	0/0:169:169,0:169:6049:0:0:0,-50.8741,-544.512	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/1:110:67,43:67:2388:43:1531:-104.951,0,-182.065	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:123:123,0:123:4381:0:0:0,-37.0267,-394.464	0/0:139:139,0:139:4973:0:0:0,-41.8432,-447.717	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/1:63:30,33:30:1068:33:1177:-87.2728,0,-77.4672	0/1:36:19,17:19:684:17:612:-44.5764,0,-51.0532	0/1:96:63,33:63:2251:33:1188:-78.3297,0,-173.954	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:54:54,0:54:1911:0:0:0,-16.2556,-172.267	0/0:38:38,0:38:1321:0:0:0,-11.4391,-119.185	0/1:27:13,14:13:459:14:504:-37.5703,0,-33.5163	0/1:70:32,38:32:1140:38:1368:-102.349,0,-81.8371	0/1:44:13,31:13:468:31:1101:-86.1008,0,-29.2143	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:98:98,0:98:3479:0:0:0,-29.5009,-313.321
chr03	3996634	.	AAAGC	CAAGC,CAAGA	161263	PASS	AB=0.482812,0.514583;ABP=7.93683,6.55704;AC=159,27;AF=0.854839,0.145161;AN=186;AO=6236,1003;CIGAR=1X4M,1X3M1X;DP=7270;DPB=7270.4;DPRA=0,1.13808;EPP=13544.3,2181;EPPR=20.3821;GTI=0;LEN=1,5;MEANALT=1.55914,2.2;MQM=59.6764,56.7398;MQMR=60;NS=93;NUMALT=2;ODDS=3.15295;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,68;PQR=0;PRO=0;QA=223616,35675;QR=259;RO=8;RPL=0,0;RPP=13544.3,2181;RPPR=20.3821;RPR=6236,1003;RUN=1,1;SAF=6236,1003;SAP=13544.3,2181;SAR=0,0;SRF=8;SRP=20.3821;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,13,13:0:0:13,13:468,465:-76.1457,-37.965,-34.0516,-38.538,0,-34.6247	1/2:87:0,48,39:0:0:48,39:1716,1394:-252.952,-113.049,-98.5994,-140.259,0,-128.519	1/2:91:0,45,46:0:0:45,46:1608,1637:-263.808,-132.712,-119.166,-131.091,0,-117.244	1/1:141:0,140,0:0:0:140,0:5028,0:-452.322,-42.1442,0,-452.322,-42.1442,-452.322	1/1:39:0,39,0:0:0:39,0:1388,0:-125.214,-11.7402,0,-125.214,-11.7402,-125.214	1/1:27:0,27,0:0:0:27,0:972,0:-87.7897,-8.12781,0,-87.7897,-8.12781,-87.7897	1/1:85:0,85,0:0:0:85,0:3044,0:-274.168,-25.5876,0,-274.168,-25.5876,-274.168	1/1:125:0,125,0:0:0:125,0:4464,0:-401.587,-37.6288,0,-401.587,-37.6288,-401.587	1/1:71:0,71,0:0:0:71,0:2544,0:-229.17,-21.3731,0,-229.17,-21.3731,-229.17	1/1:66:0,66,0:0:0:66,0:2373,0:-213.481,-19.868,0,-213.481,-19.868,-213.481	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5086,-9.0309,0,-97.5086,-9.0309,-97.5086	1/2:69:0,30,39:0:0:30,39:1076,1396:-201.43,-113.882,-104.851,-87.9048,0,-76.1646	1/2:38:0,15,23:0:0:15,23:540,824:-111.501,-67.463,-62.9476,-44.3965,0,-37.4728	1/1:80:0,80,0:0:0:80,0:2880,0:-259.409,-24.0824,0,-259.409,-24.0824,-259.409	1/1:44:1,43,0:1:36:43,0:1544,0:-135.641,-9.64705,0,-135.942,-12.9443,-138.88	1/1:35:0,35,0:0:0:35,0:1244,0:-112.252,-10.5361,0,-112.252,-10.5361,-112.252	1/1:51:0,51,0:0:0:51,0:1832,0:-165.147,-15.3525,0,-165.147,-15.3525,-165.147	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:31:0,18,13:0:0:18,13:648,466:-91.1055,-38.2386,-32.8201,-53.2251,0,-49.3118	1/1:249:0,247,0:0:0:247,0:8872,0:-797.983,-74.3544,0,-797.983,-74.3544,-797.983	1/1:85:0,81,0:0:0:81,0:2908,0:-261.586,-24.3834,0,-261.586,-24.3834,-261.586	1/1:212:0,212,0:0:0:212,0:7620,0:-685.791,-63.8184,0,-685.791,-63.8184,-685.791	1/1:26:0,26,0:0:0:26,0:936,0:-84.5098,-7.82678,0,-84.5098,-7.82678,-84.5098	1/1:42:0,42,0:0:0:42,0:1500,0:-135.277,-12.6433,0,-135.277,-12.6433,-135.277	1/1:52:0,52,0:0:0:52,0:1864,0:-168.026,-15.6536,0,-168.026,-15.6536,-168.026	1/2:256:0,119,137:0:0:119,137:4264,4845:-742.071,-394.367,-358.544,-348.06,0,-306.818	1/1:162:1,161,0:1:36:161,0:5776,0:-516.328,-45.1686,0,-516.63,-48.4658,-519.567	1/1:32:0,32,0:0:0:32,0:1152,0:-103.977,-9.63296,0,-103.977,-9.63296,-103.977	1/1:223:1,222,0:1:36:222,0:7957,0:-712.223,-63.5314,0,-712.524,-66.8287,-715.461	1/1:87:1,83,3:1:25:83,3:2980,108:-265.796,-23.0641,0,-257.289,-16.0956,-258.334	1/1:98:0,97,1:0:0:97,1:3476,30:-312.621,-29.1999,0,-310.224,-26.5018,-309.923	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:12:0,9,3:0:0:9,3:324,104:-35.2329,-8.78576,-6.07649,-26.7966,0,-25.8935	1/1:114:0,114,0:0:0:114,0:4096,0:-368.82,-34.3174,0,-368.82,-34.3174,-368.82	1/1:174:1,173,0:1:35:173,0:6208,0:-555.273,-48.8806,0,-555.574,-52.0782,-558.422	1/2:40:0,30,10:0:0:30,10:1068,359:-116.365,-29.6103,-20.5794,-87.1124,0,-84.1021	.:.:.:.:.:.:.:.	1/2:132:0,63,69:0:0:63,69:2248,2438:-381.77,-198.705,-179.74,-183.419,0,-162.648	1/2:21:0,13,8:0:0:13,8:468,285:-61.7587,-23.5745,-19.6611,-38.5416,0,-36.1334	1/1:105:0,105,0:0:0:105,0:3764,0:-338.951,-31.6082,0,-338.951,-31.6082,-338.951	1/1:33:0,33,0:0:0:33,0:1180,0:-106.503,-9.93399,0,-106.503,-9.93399,-106.503	1/1:31:0,31,0:0:0:31,0:1112,0:-100.38,-9.33193,0,-100.38,-9.33193,-100.38	1/1:67:0,67,0:0:0:67,0:2404,0:-216.616,-20.169,0,-216.616,-20.169,-216.616	1/1:104:0,103,1:0:0:103,1:3704,35:-333.199,-31.0061,0,-330.354,-27.8114,-330.053	1/1:140:0,139,1:0:0:139,1:4984,31:-448.198,-41.8432,0,-445.817,-39.1634,-445.516	1/1:98:0,97,0:0:0:97,0:3460,0:-310.75,-29.1999,0,-310.75,-29.1999,-310.75	1/2:99:0,39,59:0:0:39,59:1400,2117:-286.772,-172.571,-160.831,-114.248,0,-96.4871	1/1:138:0,138,0:0:0:138,0:4952,0:-445.55,-41.5421,0,-445.55,-41.5421,-445.55	1/1:12:0,12,0:0:0:12,0:417,0:-37.8579,-3.61236,0,-37.8579,-3.61236,-37.8579	1/2:113:0,63,50:0:0:63,50:2256,1778:-328.869,-144.904,-125.939,-184.322,0,-169.27	1/1:46:0,46,0:0:0:46,0:1652,0:-148.967,-13.8474,0,-148.967,-13.8474,-148.967	1/1:15:0,15,0:0:0:15,0:536,0:-48.5571,-4.51545,0,-48.5571,-4.51545,-48.5571	1/2:85:0,39,46:0:0:39,46:1396,1635:-247.298,-133.455,-121.715,-114.199,0,-100.352	1/2:22:0,8,14:0:0:8,14:288,493:-63.9856,-40.4834,-38.0751,-23.8592,0,-19.6447	1/2:5:0,3,2:0:0:3,2:108,71:-14.9552,-6.14,-5.23691,-9.17208,0,-8.57002	1/1:26: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chr03	4088933	.	T	C	124856	PASS	AB=0.506981;ABP=3.88955;AC=159;AF=0.845745;AN=188;AO=5690;CIGAR=1X;DP=6727;DPB=6727;DPRA=36.1559;EPP=12358.7;EPPR=2252.66;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9981;MQMR=60;NS=94;NUMALT=1;ODDS=1.85322;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203322;QR=36901;RO=1036;RPL=0;RPP=12358.7;RPPR=2252.66;RPR=5690;RUN=1;SAF=5690;SAP=12358.7;SAR=0;SRF=1036;SRP=2252.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:30,29:30:1050:29:1040:-76.1536,0,-77.0455	0/1:106:51,55:51:1813:55:1972:-145.846,0,-131.54	0/1:133:58,75:58:2069:75:2676:-201.048,0,-146.442	1/1:145:0,145:0:0:145:5158:-464.361,-43.6494,0	1/1:46:0,46:0:0:46:1637:-147.617,-13.8474,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:75:0,75:0:0:75:2671:-240.636,-22.5773,0	1/1:48:1,47:1:36:47:1672:-147.168,-10.8512,0	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	0/1:61:25,36:25:896:36:1288:-97.8608,0,-62.5975	0/1:62:30,32:30:1076:32:1144:-84.6057,0,-78.489	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	1/1:68:0,68:0:0:68:2408:-216.975,-20.47,0	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	1/1:78:0,78:0:0:78:2799:-252.149,-23.4803,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:46:27,19:27:972:19:684:-48.0429,0,-73.9505	1/1:184:0,184:0:0:184:6576:-591.922,-55.3895,0	1/1:137:0,137:0:0:137:4855:-437.107,-41.2411,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	1/1:117:0,117:0:0:117:4196:-377.821,-35.2205,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:147:71,76:71:2536:76:2705:-199.442,0,-184.24	1/1:119:0,119:0:0:119:4256:-383.219,-35.8226,0	1/1:35:0,35:0:0:35:1245:-112.353,-10.5361,0	1/1:198:0,198:0:0:198:7092:-638.339,-59.6039,0	1/1:60:4,56:4:144:56:2016:-168.399,-4.74818,0	1/1:71:0,71:0:0:71:2541:-228.939,-21.3731,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:154:0,154:0:0:154:5532:-498.003,-46.3586,0	1/1:58:1,57:1:36:57:2044:-180.634,-13.8615,0	0/1:58:28,30:28:993:30:1076:-79.6931,0,-72.2228	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:91:51,40:51:1809:40:1432:-101.784,0,-135.696	0/1:33:17,16:17:612:16:576:-42.241,0,-45.4794	1/1:120:1,119:1:36:119:4226:-376.921,-32.5253,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	1/1:77:0,77:0:0:77:2735:-246.391,-23.1793,0	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	1/1:125:1,124:1:36:124:4440:-396.173,-34.0305,0	1/1:57:0,57:0:0:57:2048:-184.589,-17.1587,0	0/1:97:45,52:45:1597:52:1856:-138.12,0,-114.818	1/1:100:0,100:0:0:100:3542:-318.988,-30.103,0	1/1:11:0,11:0:0:11:384:-34.8947,-3.31133,0	0/1:126:64,62:64:2300:62:2224:-162.494,0,-169.331	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:11:0,11:0:0:11:373:-33.8947,-3.31133,0	0/1:111:64,47:64:2285:47:1680:-118.073,0,-172.496	0/1:48:19,29:19:654:29:1025:-78.1113,0,-44.7281	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:62:0,62:0:0:62:2185:-196.913,-18.6639,0	0/1:104:56,48:56:2016:48:1720:-123.778,0,-150.406	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:94:0,94:0:0:94:3365:-303.064,-28.2968,0	1/1:145:0,145:0:0:145:5181:-466.429,-43.6494,0	0/1:41:5,36:5:176:36:1288:-103.881,0,-3.84279	1/1:71:0,71:0:0:71:2522:-227.229,-21.3731,0	1/1:120:1,119:1:36:119:4247:-378.81,-32.5253,0	0/1:69:50,19:50:1762:19:676:-40.3969,0,-138.088	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:45:1,44:1:36:44:1580:-138.893,-9.94808,0	0/1:85:43,42:43:1540:42:1500:-109.707,0,-113.306	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:77:0,77:0:0:77:2748:-247.563,-23.1793,0	1/1:118:0,118:0:0:118:4187:-377.011,-35.5215,0	0/1:68:25,43:25:881:43:1544:-118.783,0,-59.1358	0/1:108:64,44:64:2277:44:1576:-109.62,0,-172.679	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:111:0,111:0:0:111:3980:-358.39,-33.4143,0	1/1:110:0,109:0:0:109:3876:-348.826,-32.8123,0	1/1:210:0,210:0:0:210:7479:-673.155,-63.2163,0	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.937	0/1:103:44,59:44:1565:59:2120:-160.062,0,-110.134	0/1:109:54,55:54:1921:55:1960:-143.863,0,-140.353	1/1:32:0,32:0:0:32:1147:-103.54,-9.63296,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	0/1:53:23,30:23:816:30:1076:-81.1983,0,-57.8071	0/1:72:35,37:35:1241:37:1320:-97.4278,0,-90.3183	0/1:30:19,11:19:680:11:396:-26.9518,0,-52.4983	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:94:0,94:0:0:94:3365:-303.066,-28.2968,0
chr03	4326293	.	A	C	18736.7	PASS	AB=0.526024;ABP=16.7988;AC=28;AF=0.148936;AN=188;AO=1245;CIGAR=1X;DP=8723;DPB=8723;DPRA=1.00441;EPP=2706.49;EPPR=16234.8;GTI=1;LEN=1;MEANALT=1.02941;MQM=39.7534;MQMR=53.7409;NS=94;NUMALT=1;ODDS=6.76021;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43921;QR=268005;RO=7475;RPL=1245;RPP=2706.49;RPPR=16234.8;RPR=0;RUN=1;SAF=1245;SAP=2706.49;SAR=0;SRF=7475;SRP=16234.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:30,34:30:1076:34:1211:-81.5448,0,-77.5518	0/1:73:31,42:31:1116:42:1477:-103.735,0,-78.3299	0/1:81:36,45:36:1284:45:1601:-109.699,0,-90.8052	0/0:129:129,0:129:4640:0:0:0,-38.8329,-417.161	0/0:40:40,0:40:1436:0:0:0,-12.0412,-128.332	0/0:62:62,0:62:2228:0:0:0,-18.6639,-199.314	0/0:117:117,0:117:4177:0:0:0,-35.2205,-374.802	0/0:85:85,0:85:3056:0:0:0,-25.5875,-273.689	0/0:85:85,0:85:3060:0:0:0,-25.5875,-272.852	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.245	0/0:61:61,0:61:2188:0:0:0,-18.3628,-196.197	0/1:88:37,51:37:1320:51:1776:-124.518,0,-91.9283	0/1:74:33,41:33:1184:41:1458:-98.1409,0,-83.8926	0/0:96:96,0:96:3452:0:0:0,-28.8989,-307.993	0/0:60:60,0:60:2156:0:0:0,-18.0618,-193.215	0/0:52:52,0:52:1864:0:0:0,-15.6536,-166.918	0/0:70:70,0:70:2504:0:0:0,-21.0721,-223.615	0/0:68:68,0:68:2431:0:0:0,-20.47,-217.566	0/1:35:24,11:24:842:11:396:-23.1,0,-65.0805	0/0:179:179,0:179:6420:0:0:0,-53.8844,-574.688	0/0:173:173,0:173:6216:0:0:0,-52.0782,-557.829	0/0:119:119,0:119:4280:0:0:0,-35.8226,-384.317	0/0:72:72,0:72:2588:0:0:0,-21.6742,-231.041	0/0:203:203,0:203:7300:0:0:0,-61.1091,-654.301	0/0:53:53,0:53:1908:0:0:0,-15.9546,-170.134	0/1:239:98,141:98:3499:141:4987:-363.066,0,-242.196	0/0:212:211,1:211:7576:1:36:0,-60.3639,-673.731	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.0339	0/0:248:248,0:248:8892:0:0:0,-74.6554,-798.09	0/0:191:188,3:188:6729:3:104:0,-48.1213,-591.551	0/0:115:115,0:115:4128:0:0:0,-34.6184,-369.628	0/1:8:3,5:3:108:5:180:-13.4824,0,-7.65264	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.0974	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.8607	0/0:15:15,0:15:531:0:0:0,-4.51545,-47.7856	0/1:27:24,3:24:856:3:108:-1.35747,0,-69.0716	0/0:231:231,0:231:8288:0:0:0,-69.5379,-743.39	0/0:226:225,0:225:8053:0:0:0,-67.7317,-719.488	0/1:70:37,33:37:1332:33:1172:-78.3087,0,-98.433	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.0368	0/1:103:50,53:50:1800:53:1856:-129.982,0,-131.039	0/1:65:37,28:37:1328:28:977:-63.531,0,-99.7294	0/0:133:131,2:131:4704:2:63:0,-34.2739,-415.053	0/0:54:54,0:54:1932:0:0:0,-16.2556,-173.935	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.251	0/0:136:136,0:136:4884:0:0:0,-40.9401,-437.746	0/0:60:60,0:60:2147:0:0:0,-18.0618,-191.877	0/0:128:128,0:128:4592:0:0:0,-38.5318,-410.417	0/0:98:98,0:98:3512:0:0:0,-29.5009,-314.527	0/1:116:59,57:59:2116:57:2002:-138.877,0,-155.385	0/0:180:180,0:180:6441:0:0:0,-54.1854,-577.735	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.4121	0/1:152:73,79:73:2620:79:2764:-187.351,0,-188.903	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.208	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.7219	0/1:95:47,48:47:1692:48:1693:-117.859,0,-122.859	0/1:29:16,13:16:576:13:468:-30.1771,0,-43.2128	0/1:15:5,10:5:180:10:348:-26.6597,0,-12.032	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.591	0/0:100:100,0:100:3573:0:0:0,-30.103,-320.81	0/1:119:54,65:54:1935:65:2327:-166.181,0,-138.201	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0679	0/0:132:132,0:132:4740:0:0:0,-39.736,-424.068	0/0:221:221,0:221:7928:0:0:0,-66.5276,-709.941	0/0:64:60,4:60:2152:4:144:0,-6.4843,-180.391	0/0:85:85,0:85:3029:0:0:0,-25.5875,-271.922	0/0:159:159,0:159:5689:0:0:0,-47.8638,-510.748	0/1:98:35,63:35:1252:63:2252:-165.016,0,-83.1922	0/0:27:27,0:27:968:0:0:0,-8.12781,-86.6371	0/0:84:84,0:84:3003:0:0:0,-25.2865,-268.039	0/1:81:44,37:44:1584:37:1324:-91.7269,0,-118.166	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.4435	0/0:111:111,0:111:3988:0:0:0,-33.4143,-357.549	0/0:51:51,0:51:1832:0:0:0,-15.3525,-164.111	0/0:239:239,0:239:8550:0:0:0,-71.9462,-764.779	0/0:150:150,0:150:5396:0:0:0,-45.1545,-484.607	0/1:110:51,59:51:1813:59:2088:-143.14,0,-128.479	0/1:91:46,44:46:1652:44:1571:-105.893,0,-120.633	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.011	0/0:82:81,1:81:2916:1:36:0,-21.23,-257.913	0/0:138:137,1:137:4916:1:36:0,-38.1545,-435.089	0/0:146:146,0:146:5244:0:0:0,-43.9504,-470.849	0/0:138:138,0:138:4944:0:0:0,-41.5421,-443.591	0/1:47:17,30:17:608:30:1043:-77.5519,0,-40.8583	0/1:72:36,36:36:1283:36:1267:-88.733,0,-93.9701	0/1:143:79,64:79:2831:64:2190:-148.656,0,-211.441	0/0:42:42,0:42:1512:0:0:0,-12.6433,-135.573	0/0:93:92,0:92:3299:0:0:0,-27.6948,-294.957	0/0:68:68,0:68:2436:0:0:0,-20.47,-218.296	0/1:56:23,33:23:824:33:1166:-84.3977,0,-57.031	0/1:129:68,61:68:2436:61:2134:-144.442,0,-179.752	0/1:64:17,47:17:612:47:1666:-126.292,0,-35.4684	0/0:69:69,0:69:2464:0:0:0,-20.7711,-221.642	0/0:88:88,0:88:3156:0:0:0,-26.4906,-283.465
chr03	4326380	.	C	T	165770	PASS	AB=0.416718;ABP=196.875;AC=157;AF=0.844086;AN=186;AO=8180;CIGAR=1X;DP=10087;DPB=10087;DPRA=0;EPP=17765.7;EPPR=4130.98;GTI=4;LEN=1;MEANALT=1.06452;MQM=59.9796;MQMR=60;NS=93;NUMALT=1;ODDS=0.933783;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278184;QR=67438;RO=1901;RPL=0;RPP=17765.7;RPPR=4130.98;RPR=8180;RUN=1;SAF=0;SAP=17765.7;SAR=8180;SRF=0;SRP=4130.98;SRR=1901;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:48,33:48:1683:33:1108:-75.6316,0,-127.37	0/1:186:113,72:113:4005:72:2336:-154.432,0,-304.591	0/1:205:129,75:129:4585:75:2594:-171.933,0,-351.044	1/1:203:0,203:0:0:203:6961:-626.561,-61.1091,0	1/1:65:0,65:0:0:65:2252:-202.938,-19.567,0	1/1:39:0,39:0:0:39:1381:-124.587,-11.7402,0	1/1:209:0,209:0:0:209:7292:-656.334,-62.9153,0	1/1:153:0,153:0:0:153:5201:-468.1,-46.0576,0	1/1:136:2,134:2:72:134:4520:-400.131,-34.1034,0	1/1:81:0,80:0:0:80:2681:-241.314,-24.0824,0	1/1:49:0,49:0:0:49:1698:-153.102,-14.7505,0	0/1:62:32,30:32:1139:30:1049:-76.0538,0,-84.1545	0/1:59:32,27:32:1144:27:889:-62.5376,0,-85.5087	1/1:77:0,77:0:0:77:2643:-238.11,-23.1793,0	1/1:63:2,61:2:72:61:2111:-183.418,-12.1282,0	1/1:59:0,59:0:0:59:2019:-181.976,-17.7608,0	1/1:60:0,60:0:0:60:1995:-179.814,-18.0618,0	1/1:45:0,45:0:0:45:1558:-140.507,-13.5464,0	0/1:26:16,10:16:568:10:360:-24.9175,0,-43.6251	1/1:178:0,178:0:0:178:5993:-539.479,-53.5833,0	1/1:160:2,158:2:72:158:5463:-484.964,-41.3281,0	1/1:143:0,143:0:0:143:4956:-446.188,-43.0473,0	1/1:117:0,117:0:0:117:3886:-349.93,-35.2205,0	1/1:190:0,190:0:0:190:6498:-584.906,-57.1957,0	1/1:105:0,105:0:0:105:3635:-327.353,-31.6082,0	0/1:443:280,163:280:9938:163:5359:-349.086,0,-761.005	1/1:215:0,215:0:0:215:7446:-670.19,-64.7215,0	1/1:29:0,29:0:0:29:960:-86.6975,-8.72987,0	1/1:260:0,260:0:0:260:9001:-810.075,-78.2678,0	1/1:149:6,143:6:216:143:4627:-395.852,-25.063,0	1/1:112:0,112:0:0:112:3835:-345.342,-33.7154,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:26:1,25:1:36:25:885:-76.3682,-4.22851,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:229:-20.9295,-2.10721,0	0/1:11:7,4:7:252:4:129:-8.61633,0,-19.7176	1/1:200:0,199:0:0:199:6641:-597.575,-59.905,0	1/1:210:0,210:0:0:210:7196:-647.7,-63.2163,0	0/1:56:28,28:28:988:28:909:-65.2465,0,-72.3762	.:.:.:.:.:.:.:.	0/1:189:109,80:109:3871:80:2786:-194.083,0,-291.69	0/1:23:11,12:11:392:12:401:-29.4864,0,-28.6964	1/1:178:1,177:1:36:177:5940:-531.111,-49.9851,0	1/1:65:0,65:0:0:65:2204:-198.621,-19.567,0	1/1:55:0,55:0:0:55:1884:-169.831,-16.5567,0	1/1:107:0,107:0:0:107:3681:-331.49,-32.2102,0	1/1:114:0,114:0:0:114:3910:-352.091,-34.3174,0	1/1:230:0,230:0:0:230:7926:-713.374,-69.2369,0	1/1:169:0,169:0:0:169:5863:-527.782,-50.8741,0	0/1:214:121,93:121:4314:93:3252:-228.479,0,-324.016	1/1:94:1,93:1:36:93:3121:-277.508,-24.6985,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:199:124,75:124:4365:75:2540:-168.938,0,-333.117	1/1:19:0,19:0:0:19:654:-59.1776,-5.71957,0	1/1:18:0,18:0:0:18:625:-56.5725,-5.41854,0	0/1:149:93,56:93:3259:56:1915:-127.765,0,-248.674	0/1:71:27,44:27:964:44:1471:-111.295,0,-65.7037	0/1:10:5,5:5:180:5:161:-11.7963,0,-13.5418	1/1:30:0,30:0:0:30:1046:-94.4459,-9.0309,0	1/1:96:0,96:0:0:96:3237:-291.543,-28.8989,0	0/1:126:60,66:60:2144:66:2235:-163.475,0,-155.298	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:218:0,218:0:0:218:7420:-667.853,-65.6245,0	1/1:267:2,265:2:72:265:8515:-759.538,-73.5383,0	0/1:90:9,81:9:309:81:2737:-219.47,0,-1.04801	1/1:87:0,87:0:0:87:2973:-267.796,-26.1896,0	1/1:125:0,125:0:0:125:4255:-383.126,-37.6288,0	0/1:233:182,51:182:6452:51:1677:-81.0568,0,-510.627	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	1/1:106:0,106:0:0:106:3588:-323.123,-31.9092,0	0/1:86:44,42:44:1571:42:1419:-102.107,0,-115.792	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	1/1:195:0,195:0:0:195:6864:-617.832,-58.7009,0	1/1:87:5,82:5:180:82:2819:-236.457,-9.63755,0	1/1:179:0,179:0:0:179:6194:-557.558,-53.8844,0	1/1:113:0,113:0:0:113:3829:-344.803,-34.0164,0	0/1:107:67,40:67:2391:40:1364:-90.8383,0,-183.237	0/1:128:80,48:80:2812:48:1615:-107.092,0,-214.783	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	1/1:102:0,102:0:0:102:3508:-315.926,-30.7051,0	1/1:114:2,112:2:72:112:3764:-332.117,-27.4807,0	1/1:227:0,227:0:0:227:7777:-699.97,-68.3338,0	1/1:107:0,107:0:0:107:3474:-312.868,-32.2102,0	0/1:60:31,29:31:1084:29:987:-71.0707,0,-79.8043	0/1:79:44,35:44:1564:35:1168:-81.6314,0,-117.27	0/1:139:72,67:72:2572:67:2209:-157.22,0,-189.887	1/1:49:0,49:0:0:49:1551:-139.858,-14.7505,0	1/1:62:1,61:1:36:61:2145:-189.718,-15.0656,0	1/1:69:0,69:0:0:69:2369:-213.464,-20.7711,0	0/1:46:24,21:24:849:21:744:-53.5214,0,-62.9657	0/1:75:36,39:36:1288:39:1252:-90.3826,0,-93.6463	0/1:57:47,10:47:1675:10:318:-11.7695,0,-133.878	1/1:102:2,100:2:72:100:3330:-293.072,-23.8683,0	1/1:77:0,76:0:0:76:2597:-233.616,-22.8783,0
chr03	4326407	.	G	A	191626	PASS	AB=0.41471;ABP=207.478;AC=158;AF=0.849462;AN=186;AO=8698;CIGAR=1X;DP=10628;DPB=10628;DPRA=0;EPP=18407.2;EPPR=4107.46;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.9707;MQMR=60;NS=93;NUMALT=1;ODDS=1.392;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309148;QR=68449;RO=1926;RPL=8642;RPP=18407.2;RPPR=4107.46;RPR=56;RUN=1;SAF=0;SAP=18890.5;SAR=8698;SRF=0;SRP=4185.27;SRR=1926;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:47,33:47:1671:33:1172:-81.7051,0,-126.594	0/1:199:114,85:114:4062:85:2980:-208.526,0,-305.863	0/1:213:129,84:129:4601:84:2968:-203.234,0,-350.135	1/1:214:0,214:0:0:214:7620:-685.838,-64.4204,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	1/1:220:0,220:0:0:220:7827:-704.461,-66.2266,0	1/1:159:1,158:1:36:158:5613:-501.651,-44.2655,0	1/1:138:0,138:0:0:138:4896:-440.792,-41.5421,0	1/1:88:0,88:0:0:88:3125:-281.477,-26.4906,0	1/1:52:0,52:0:0:52:1842:-166.056,-15.6536,0	0/1:59:32,27:32:1140:27:968:-69.6766,0,-85.1484	0/1:62:33,29:33:1188:29:1044:-75.6028,0,-88.5647	1/1:76:0,76:0:0:76:2716:-244.684,-22.8783,0	1/1:66:0,66:0:0:66:2346:-211.398,-19.868,0	1/1:62:0,62:0:0:62:2204:-198.624,-18.6639,0	1/1:67:0,67:0:0:67:2384:-214.816,-20.169,0	1/1:56:0,56:0:0:56:1980:-178.473,-16.8577,0	0/1:27:16,11:16:576:11:386:-26.9479,0,-44.0472	1/1:194:0,194:0:0:194:6930:-623.767,-58.3998,0	1/1:164:2,162:2:72:162:5738:-509.678,-42.5322,0	1/1:148:0,148:0:0:148:5252:-472.818,-44.5524,0	1/1:136:0,136:0:0:136:4847:-436.386,-40.9401,0	1/1:203:0,203:0:0:203:7227:-650.487,-61.1091,0	1/1:115:0,115:0:0:115:4072:-366.662,-34.6185,0	0/1:464:282,181:282:10032:181:6444:-440.314,0,-763.086	1/1:232:0,232:0:0:232:8246:-742.158,-69.839,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:278:0,277:0:0:277:9871:-887.976,-83.3853,0	1/1:158:7,151:7:252:151:5355:-458.781,-24.5338,0	1/1:117:2,115:2:72:115:4068:-359.472,-28.3838,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:27:1,26:1:36:26:917:-79.2463,-4.52954,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	1/1:212:0,212:0:0:212:7554:-679.903,-63.8184,0	1/1:225:0,225:0:0:225:7979:-718.084,-67.7318,0	0/1:59:28,31:28:978:31:1103:-81.819,0,-70.5704	.:.:.:.:.:.:.:.	0/1:195:112,82:112:3995:82:2894:-201.937,0,-300.981	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	1/1:183:1,182:1:36:182:6461:-577.866,-51.4902,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:51:0,51:0:0:51:1783:-160.752,-15.3525,0	1/1:115:0,115:0:0:115:4098:-369.006,-34.6185,0	1/1:120:0,120:0:0:120:4287:-386.008,-36.1236,0	1/1:241:1,240:1:36:240:8539:-764.917,-68.95,0	1/1:176:0,176:0:0:176:6251:-562.688,-52.9813,0	0/1:220:122,98:122:4301:98:3500:-248.985,0,-321.045	1/1:95:2,93:2:72:93:3306:-290.923,-21.7611,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	0/1:207:129,78:129:4560:78:2787:-188.757,0,-348.256	1/1:22:0,22:0:0:22:775:-70.0712,-6.62266,0	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	0/1:146:91,55:91:3242:55:1959:-132.634,0,-248.051	0/1:75:29,46:29:1032:46:1635:-124.861,0,-70.6162	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:103:0,103:0:0:103:3659:-329.516,-31.0061,0	0/1:132:61,71:61:2149:71:2540:-189.115,0,-153.938	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:220:0,220:0:0:220:7788:-700.958,-66.2266,0	1/1:309:3,306:3:108:306:10826:-964.184,-82.9431,0	1/1:102:9,93:9:324:93:3276:-265.553,-1.19921,0	1/1:90:0,90:0:0:90:3202:-288.403,-27.0927,0	1/1:125:0,125:0:0:125:4452:-400.85,-37.6288,0	0/1:240:186,54:186:6631:54:1899:-98.9391,0,-524.622	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:110:0,110:0:0:110:3919:-352.905,-33.1133,0	0/1:91:46,45:46:1617:45:1616:-118.336,0,-118.423	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:199:0,199:0:0:199:7064:-635.816,-59.905,0	1/1:94:2,91:2:72:91:3244:-285.391,-21.4249,0	1/1:181:0,181:0:0:181:6466:-582.026,-54.4864,0	1/1:117:0,117:0:0:117:4191:-377.371,-35.2205,0	0/1:111:68,43:68:2410:43:1532:-104.759,0,-183.742	0/1:136:80,56:80:2831:56:1956:-135.372,0,-214.09	1/1:17:0,17:0:0:17:593:-53.6956,-5.11751,0	1/1:111:0,111:0:0:111:3971:-357.567,-33.4143,0	1/1:120:2,118:2:72:118:4200:-371.344,-29.2869,0	1/1:246:0,246:0:0:246:8732:-785.878,-74.0534,0	1/1:122:0,122:0:0:122:4306:-387.718,-36.7257,0	0/1:63:31,32:31:1095:32:1140:-83.9443,0,-79.8942	0/1:82:47,35:47:1665:35:1248:-87.9404,0,-125.451	0/1:141:73,68:73:2583:68:2429:-176.42,0,-190.272	1/1:56:0,56:0:0:56:1981:-178.563,-16.8577,0	1/1:68:0,68:0:0:68:2408:-216.976,-20.47,0	1/1:73:0,73:0:0:73:2589:-233.258,-21.9752,0	0/1:49:28,21:28:1000:21:752:-53.2558,0,-75.5649	0/1:74:37,37:37:1310:37:1328:-97.546,0,-95.9239	0/1:59:46,13:46:1656:13:460:-23.9746,0,-131.568	1/1:104:1,103:1:36:103:3639:-324.116,-27.7088,0	1/1:81:0,81:0:0:81:2888:-260.154,-24.3834,0
chr03	4326541	.	TCT	ACC,TCC	197477	PASS	AB=0.546157,0.449594;ABP=50.9194,60.1454;AC=160,28;AF=0.851064,0.148936;AN=188;AO=7918,1172;CIGAR=1X1M1X,2M1X;DP=9126;DPB=9126;DPRA=0,1.02366;EPP=17144.7,2521.98;EPPR=7.35324;GTI=0;LEN=3,1;MEANALT=1.69149,2.34286;MQM=59.5416,59.9505;MQMR=60;NS=94;NUMALT=2;ODDS=3.26632;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=277677,41813;QR=57;RO=2;RPL=7912,1169;RPP=17144.7,2521.98;RPPR=7.35324;RPR=6,3;RUN=1,1;SAF=0,0;SAP=17196.7,2547.98;SAR=7918,1172;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,32,21:0:0:32,21:1115,752:-152.139,-61.6846,-52.0517,-90.808,0,-84.4864	1/2:66:0,37,29:0:0:37,29:1290,1044:-190.426,-85.5449,-74.4068,-105.235,0,-96.5055	1/2:121:0,66,55:0:0:66,55:2264,1958:-343.668,-159.937,-140.069,-184.08,0,-167.524	1/1:254:0,254,0:0:0:254,0:8894,0:-800.431,-76.4616,0,-800.431,-76.4616,-800.431	1/1:55:0,54,0:0:0:54,0:1900,0:-170.894,-16.2556,0,-170.894,-16.2556,-170.894	1/1:49:0,48,0:0:0:48,0:1682,0:-151.249,-14.4494,0,-151.249,-14.4494,-151.249	1/1:81:0,81,0:0:0:81,0:2815,0:-253.558,-24.3834,0,-253.558,-24.3834,-253.558	1/1:119:0,118,0:0:0:118,0:4070,0:-366.124,-35.5215,0,-366.124,-35.5215,-366.124	1/1:103:0,102,0:0:0:102,0:3556,0:-320.004,-30.7051,0,-320.004,-30.7051,-320.004	1/1:55:0,55,0:0:0:55,0:1936,0:-174.505,-16.5567,0,-174.505,-16.5567,-174.505	1/1:64:0,63,0:0:0:63,0:2226,0:-200.341,-18.9649,0,-200.341,-18.9649,-200.341	1/2:118:0,68,50:0:0:68,50:2397,1780:-340.548,-145.431,-124.961,-195.471,0,-180.42	1/2:85:0,39,45:0:0:39,45:1384,1612:-244.357,-131.612,-119.872,-112.887,0,-99.3411	1/1:103:0,103,0:0:0:103,0:3570,0:-321.474,-31.0061,0,-321.474,-31.0061,-321.474	1/1:91:0,91,0:0:0:91,0:3188,0:-287.121,-27.3937,0,-287.121,-27.3937,-287.121	1/1:82:0,81,0:0:0:81,0:2864,0:-257.73,-24.3834,0,-257.73,-24.3834,-257.73	1/1:56:1,55,0:1:36:55,0:1950,0:-172.143,-13.2594,0,-172.444,-16.5567,-175.381	1/1:41:0,41,0:0:0:41,0:1432,0:-129.156,-12.3422,0,-129.156,-12.3422,-129.156	1/2:51:0,32,19:0:0:32,19:1121,684:-147.314,-56.1708,-46.5378,-91.4997,0,-85.7801	1/1:129:0,129,0:0:0:129,0:4502,0:-405.249,-38.8329,0,-405.249,-38.8329,-405.249	1/1:140:0,140,0:0:0:140,0:4913,0:-442.266,-42.1442,0,-442.266,-42.1442,-442.266	1/1:96:0,96,0:0:0:96,0:3387,0:-305.043,-28.8989,0,-305.043,-28.8989,-305.043	1/1:241:0,241,0:0:0:241,0:8419,0:-757.163,-72.5482,0,-757.163,-72.5482,-757.163	1/1:46:0,46,0:0:0:46,0:1618,0:-145.881,-13.8474,0,-145.881,-13.8474,-145.881	1/1:90:0,90,0:0:0:90,0:3148,0:-283.516,-27.0927,0,-283.516,-27.0927,-283.516	1/2:214:0,124,89:0:0:124,89:4354,3188:-614.341,-259.992,-222.664,-354.344,0,-327.553	1/1:244:0,243,0:0:0:243,0:8592,0:-772.85,-73.1503,0,-772.85,-73.1503,-772.85	1/1:43:0,43,0:0:0:43,0:1505,0:-135.609,-12.9443,0,-135.609,-12.9443,-135.609	1/1:268:0,268,0:0:0:268,0:9369,0:-843.152,-80.676,0,-843.152,-80.676,-843.152	1/1:108:0,106,2:0:0:106,2:3657,72:-328.921,-31.9092,0,-323.046,-25.6745,-322.444	1/1:164:0,164,0:0:0:164,0:5689,0:-512.015,-49.3689,0,-512.015,-49.3689,-512.015	1/2:14:0,10,4:0:0:10,4:333,144:-39.0306,-12.1095,-9.0992,-27.2732,0,-26.0691	1/1:14:0,14,0:0:0:14,0:501,0:-45.4185,-4.21442,0,-45.4185,-4.21442,-45.4185	1/1:15:0,15,0:0:0:15,0:538,0:-48.7366,-4.51545,0,-48.7366,-4.51545,-48.7366	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:33:0,14,18:0:0:14,18:474,644:-90.9325,-52.5123,-48.2979,-38.4083,0,-32.9898	1/1:266:0,265,0:0:0:265,0:9267,0:-833.631,-79.773,0,-833.631,-79.773,-833.631	1/1:103:0,103,0:0:0:103,0:3621,0:-325.87,-31.0061,0,-325.87,-31.0061,-325.87	1/2:68:0,36,32:0:0:36,32:1269,1144:-196.937,-93.6366,-82.7995,-103.655,0,-94.0225	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:97:0,62,34:0:0:62,34:2202,1212:-278.071,-98.7916,-80.1277,-179.275,0,-169.04	1/2:41:0,26,15:0:0:26,15:932,540:-120.426,-44.4211,-36.5943,-76.3641,0,-71.8487	1/1:154:0,154,0:0:0:154,0:5411,0:-486.914,-46.3586,0,-486.914,-46.3586,-486.914	1/1:89:0,89,0:0:0:89,0:3072,0:-276.542,-26.7917,0,-276.542,-26.7917,-276.542	1/1:66:0,65,0:0:0:65,0:2275,0:-204.782,-19.567,0,-204.782,-19.567,-204.782	1/1:156:0,156,0:0:0:156,0:5551,0:-499.707,-46.9607,0,-499.707,-46.9607,-499.707	1/1:149:0,148,1:0:0:148,1:5199,32:-467.619,-44.5524,0,-465.044,-41.6578,-464.743	1/1:177:0,175,0:0:0:175,0:6104,0:-549.045,-52.6803,0,-549.045,-52.6803,-549.045	1/1:94:0,93,0:0:0:93,0:3227,0:-289.913,-27.9958,0,-289.913,-27.9958,-289.913	1/2:126:0,69,56:0:0:69,56:2451,2008:-363.525,-163.815,-143.044,-199.746,0,-182.888	1/1:54:0,54,0:0:0:54,0:1897,0:-170.984,-16.2556,0,-170.984,-16.2556,-170.984	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:135:0,75,60:0:0:75,60:2655,2109:-388.252,-172.007,-149.43,-216.598,0,-198.536	1/1:56:0,56,0:0:0:56,0:1991,0:-179.462,-16.8577,0,-179.462,-16.8577,-179.462	1/1:12:0,12,0:0:0:12,0:428,0:-38.8477,-3.61236,0,-38.8477,-3.61236,-38.8477	1/2:141:0,81,60:0:0:81,60:2857,2133:-406.786,-174.175,-149.791,-232.966,0,-214.904	1/2:49:0,26,23:0:0:26,23:909,809:-140.15,-66.2046,-58.3778,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chr03	4327357	.	A	G	179092	PASS	AB=0.545191;ABP=45.7951;AC=159;AF=0.845745;AN=188;AO=8199;CIGAR=1X;DP=9309;DPB=9309;DPRA=0;EPP=17806.9;EPPR=2402.49;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.9929;MQMR=59.9964;NS=94;NUMALT=1;ODDS=4.60963;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=289705;QR=39297;RO=1105;RPL=6;RPP=17754.8;RPPR=2402.49;RPR=8193;RUN=1;SAF=6;SAP=17754.8;SAR=8193;SRF=0;SRP=2402.49;SRR=1105;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:21,9:21:734:9:324:-20.475,0,-57.3495	0/1:48:27,21:27:963:21:748:-53.1959,0,-72.5365	0/1:125:54,71:54:1923:71:2519:-189.332,0,-135.718	1/1:228:0,228:0:0:228:8043:-723.897,-68.6348,0	1/1:37:2,35:2:72:35:1256:-106.509,-4.30139,0	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	1/1:116:1,114:1:36:114:4080:-363.786,-31.38,0	1/1:118:0,118:0:0:118:4160:-374.581,-35.5215,0	1/1:136:0,136:0:0:136:4788:-431.077,-40.9401,0	1/1:50:0,49:0:0:49:1729:-155.533,-14.7505,0	1/1:61:0,61:0:0:61:2108:-189.984,-18.3628,0	0/1:98:43,55:43:1519:55:1935:-144.922,0,-107.501	0/1:71:37,34:37:1307:34:1196:-86.5695,0,-96.5576	1/1:99:0,99:0:0:99:3389:-305.222,-29.802,0	1/1:79:0,79:0:0:79:2772:-249.719,-23.7814,0	1/1:80:0,80:0:0:80:2800:-252.239,-24.0824,0	1/1:48:0,48:0:0:48:1690:-152.383,-14.4494,0	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	0/1:45:20,25:20:693:25:874:-65.4289,0,-49.1433	1/1:159:0,159:0:0:159:5567:-501.146,-47.8638,0	1/1:131:0,131:0:0:131:4649:-418.573,-39.4349,0	1/1:166:1,165:1:36:165:5855:-523.465,-46.3727,0	1/1:150:0,150:0:0:150:5273:-474.707,-45.1545,0	1/1:86:1,85:1:36:85:3010:-267.533,-22.2903,0	1/1:129:0,129:0:0:129:4582:-412.545,-38.8329,0	0/1:255:98,157:98:3475:157:5581:-425.652,0,-236.199	1/1:324:0,324:0:0:324:11491:-1034.07,-97.5337,0	1/1:48:0,48:0:0:48:1686:-152.025,-14.4494,0	1/1:337:0,337:0:0:337:11888:-1069.79,-101.447,0	1/1:130:3,127:3:108:127:4500:-395.094,-29.0587,0	1/1:81:0,81:0:0:81:2863:-257.905,-24.3834,0	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	1/1:14:0,14:0:0:14:487:-44.1592,-4.21442,0	1/1:15:0,15:0:0:15:530:-48.032,-4.51545,0	0/1:29:11,18:11:381:18:636:-48.8382,0,-25.8908	1/1:246:0,246:0:0:246:8689:-782.003,-74.0534,0	1/1:71:0,71:0:0:71:2498:-225.071,-21.3731,0	0/1:49:19,30:19:680:30:1076:-82.4024,0,-46.7787	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:119:46,73:46:1652:73:2615:-199.775,0,-113.146	0/1:32:13,19:13:437:19:676:-51.535,0,-30.0179	1/1:162:0,162:0:0:162:5709:-513.931,-48.7669,0	1/1:57:0,57:0:0:57:2014:-181.532,-17.1587,0	1/1:67:0,67:0:0:67:2307:-207.885,-20.169,0	1/1:179:1,178:1:36:178:6315:-564.845,-50.2861,0	1/1:102:0,102:0:0:102:3601:-324.297,-30.7051,0	1/1:224:0,224:0:0:224:7976:-717.866,-67.4307,0	1/1:152:0,152:0:0:152:5340:-480.737,-45.7566,0	0/1:134:62,72:62:2193:72:2523:-186.983,0,-157.296	1/1:197:0,197:0:0:197:6964:-626.828,-59.3029,0	1/1:14:0,14:0:0:14:476:-43.1619,-4.21442,0	0/1:127:62,65:62:2213:65:2285:-167.678,0,-161.202	1/1:72:0,72:0:0:72:2530:-227.95,-21.6742,0	1/1:19:0,19:0:0:19:668:-60.4457,-5.71957,0	0/1:133:67,66:67:2385:66:2355:-172.171,0,-174.869	0/1:72:26,46:26:932:46:1585:-121.26,0,-62.5247	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	1/1:59:0,59:0:0:59:2082:-187.647,-17.7608,0	1/1:86:0,86:0:0:86:3045:-274.278,-25.8886,0	0/1:127:61,65:61:2188:65:2300:-169.122,0,-159.049	1/1:21:0,21:0:0:21:733:-66.2897,-6.32163,0	1/1:112:0,112:0:0:112:3996:-359.831,-33.7154,0	1/1:131:0,131:0:0:131:4653:-418.934,-39.4349,0	0/1:51:8,43:8:288:43:1525:-122.189,0,-10.9149	1/1:87:0,87:0:0:87:3081:-277.519,-26.1896,0	1/1:88:0,88:0:0:88:3135:-282.374,-26.4906,0	0/1:42:27,15:27:960:15:540:-36.2933,0,-74.0721	1/1:59:0,59:0:0:59:2088:-188.188,-17.7608,0	1/1:43:0,43:0:0:43:1523:-137.362,-12.9443,0	0/1:34:20,14:20:716:14:500:-35.1012,0,-54.5327	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:213:0,212:0:0:212:7497:-674.418,-63.8184,0	1/1:102:0,102:0:0:102:3628:-326.725,-30.7051,0	1/1:220:0,220:0:0:220:7776:-699.769,-66.2266,0	1/1:208:0,208:0:0:208:7350:-661.553,-62.6142,0	0/1:101:39,61:39:1391:61:2161:-164.293,0,-95.0255	0/1:88:40,48:40:1420:48:1690:-125.894,0,-101.607	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:96:1,95:1:36:95:3391:-301.808,-25.3006,0	1/1:129:0,129:0:0:129:4535:-408.318,-38.8329,0	1/1:228:0,228:0:0:228:8061:-725.517,-68.6348,0	1/1:78:0,78:0:0:78:2736:-246.483,-23.4803,0	0/1:72:25,47:25:896:47:1643:-126.481,0,-59.2862	0/1:44:23,21:23:806:21:756:-55.1219,0,-59.6129	0/1:136:73,63:73:2607:63:2238:-160.743,0,-193.938	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	1/1:76:0,76:0:0:76:2665:-240.094,-22.8783,0	1/1:84:0,84:0:0:84:2955:-266.184,-25.2865,0	0/1:63:30,33:30:1068:33:1184:-87.9034,0,-77.4672	0/1:183:70,113:70:2508:113:3967:-302.133,0,-170.884	0/1:78:57,21:57:2030:21:752:-44.5259,0,-159.491	1/1:84:0,84:0:0:84:3005:-270.68,-25.2865,0	1/1:107:0,107:0:0:107:3764:-338.958,-32.2102,0
chr03	4328133	.	T	C	86611.1	PASS	AB=0.474465;ABP=9.88603;AC=158;AF=0.849462;AN=186;AO=3978;CIGAR=1X;DP=4637;DPB=4637;DPRA=0;EPP=8641.13;EPPR=1423.15;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.6727;MQMR=59.8991;NS=93;NUMALT=1;ODDS=1.47409;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140690;QR=23240;RO=654;RPL=3978;RPP=8641.13;RPPR=1423.15;RPR=0;RUN=1;SAF=3978;SAP=8641.13;SAR=0;SRF=654;SRP=1423.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:32,28:32:1135:28:989:-71.2602,0,-84.3963	0/1:36:17,19:17:599:19:680:-50.6921,0,-43.401	0/1:66:29,37:29:1044:37:1304:-97.4184,0,-74.4068	1/1:99:0,99:0:0:99:3491:-314.395,-29.802,0	1/1:27:0,27:0:0:27:949:-85.7182,-8.12781,0	1/1:31:0,31:0:0:31:1093:-98.6777,-9.33193,0	1/1:62:0,62:0:0:62:2196:-197.894,-18.6639,0	1/1:134:0,134:0:0:134:4683:-421.447,-40.338,0	1/1:98:0,98:0:0:98:3477:-313.067,-29.5009,0	1/1:31:0,31:0:0:31:1103:-99.5798,-9.33193,0	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	0/1:56:35,21:35:1239:21:723:-48.5308,0,-94.9536	0/1:37:20,17:20:712:17:595:-42.7222,0,-53.2604	1/1:15:0,15:0:0:15:540:-48.9319,-4.51545,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:16:0,16:0:0:16:561:-50.7415,-4.81648,0	1/1:13:0,13:0:0:13:433:-39.2875,-3.91339,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:59:0,59:0:0:59:2107:-189.892,-17.7608,0	1/1:77:0,77:0:0:77:2735:-246.333,-23.1793,0	1/1:59:0,59:0:0:59:2095:-188.819,-17.7608,0	1/1:62:1,61:1:36:61:2150:-190.227,-15.1277,0	1/1:48:0,48:0:0:48:1705:-153.711,-14.4494,0	1/1:59:0,58:0:0:58:2041:-183.593,-17.4597,0	0/1:131:75,56:75:2664:56:1982:-139.217,0,-200.564	1/1:89:0,89:0:0:89:3125:-281.417,-26.7917,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:144:0,144:0:0:144:5059:-455.454,-43.3483,0	1/1:98:2,96:2:72:96:3430:-301.933,-22.6642,0	1/1:62:1,61:1:36:61:2137:-188.994,-15.0656,0	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7858,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:201:-18.4088,-1.80618,0	0/1:17:5,12:5:180:12:424:-33.3789,0,-11.4346	1/1:65:0,65:0:0:65:2314:-208.474,-19.567,0	1/1:100:0,99:0:0:99:3512:-315.915,-29.802,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:67:31,36:31:1103:36:1281:-95.4177,0,-79.4108	0/0:12:11,1:11:388:1:36:0,-0.0191872,-31.6642	1/1:133:0,132:0:0:132:4685:-421.418,-39.736,0	1/1:10:0,10:0:0:10:351:-31.922,-3.0103,0	1/1:13:0,13:0:0:13:455:-41.282,-3.91339,0	1/1:150:0,150:0:0:150:5327:-479.563,-45.1545,0	1/1:68:0,68:0:0:68:2426:-218.581,-20.47,0	1/1:89:0,89:0:0:89:3144:-283.171,-26.7917,0	1/1:62:0,62:0:0:62:2220:-200.059,-18.6639,0	0/1:55:23,32:23:820:32:1148:-87.0708,0,-57.5659	1/1:67:0,67:0:0:67:2377:-214.185,-20.169,0	1/1:7:0,7:0:0:7:248:-22.6223,-2.10721,0	0/1:107:47,59:47:1680:59:2091:-156.171,0,-119.204	1/1:26:0,26:0:0:26:897:-81.0387,-7.82678,0	1/1:19:0,19:0:0:19:658:-59.5283,-5.71957,0	0/1:64:29,35:29:1040:35:1215:-90.3597,0,-74.6484	0/1:50:17,33:17:603:33:1165:-90.0965,0,-39.548	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:9:0,9:0:0:9:305:-27.7772,-2.70927,0	1/1:67:0,67:0:0:67:2373:-213.827,-20.169,0	0/1:76:49,27:49:1756:27:948:-62.7543,0,-135.446	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:69:0,69:0:0:69:2409:-217.052,-20.7711,0	1/1:134:0,134:0:0:134:4744:-426.74,-40.338,0	1/1:31:2,29:2:72:29:1031:-86.2607,-2.49521,0	1/1:36:0,36:0:0:36:1284:-115.847,-10.8371,0	1/1:68:0,68:0:0:68:2402:-216.376,-20.47,0	0/1:72:41,31:41:1419:31:1097:-77.3643,0,-106.309	1/1:7:0,7:0:0:7:252:-23.0243,-2.10721,0	1/1:22:0,22:0:0:22:758:-68.5342,-6.62266,0	0/1:27:14,13:14:500:13:455:-33.1541,0,-37.2084	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:171:0,171:0:0:171:6074:-546.478,-51.4761,0	1/1:39:0,39:0:0:39:1378:-124.297,-11.7402,0	1/1:77:0,77:0:0:77:2716:-244.676,-23.1793,0	1/1:60:0,60:0:0:60:2130:-191.965,-18.0618,0	0/1:64:27,37:27:968:37:1305:-98.4753,0,-68.1714	0/1:26:8,18:8:284:18:629:-49.1066,0,-18.0766	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:62:0,62:0:0:62:2186:-196.998,-18.6639,0	1/1:69:0,69:0:0:69:2443:-220.049,-20.7711,0	1/1:134:0,133:0:0:133:4721:-424.68,-40.037,0	1/1:26:0,26:0:0:26:936:-84.5571,-7.82678,0	0/1:27:22,5:22:768:5:171:-7.59764,0,-61.3098	0/1:16:10,6:10:356:6:197:-13.2348,0,-27.5648	0/1:62:42,20:42:1474:20:711:-45.6436,0,-114.289	1/1:12:0,12:0:0:12:432:-39.2048,-3.61236,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	0/1:30:20,10:20:716:10:337:-21.6238,0,-55.7368	0/1:25:18,7:18:644:7:248:-15.1338,0,-50.7648	1/1:67:0,67:0:0:67:2377:-214.179,-20.169,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0
chr03	4367867	.	C	T	121987	PASS	AB=0.501364;ABP=3.03992;AC=160;AF=0.851064;AN=188;AO=5597;CIGAR=1X;DP=6528;DPB=6528;DPRA=0;EPP=12139.4;EPPR=2018.14;GTI=0;LEN=1;MEANALT=1.03191;MQM=55.5673;MQMR=59.6476;NS=94;NUMALT=1;ODDS=6.56039;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198803;QR=32914;RO=928;RPL=5596;RPP=12148.1;RPPR=2018.14;RPR=1;RUN=1;SAF=5596;SAP=12148.1;SAR=1;SRF=928;SRP=2018.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:19,13:19:671:13:464:-32.4057,0,-50.9799	0/1:65:27,38:27:963:38:1341:-101.23,0,-67.4026	0/1:121:52,69:52:1860:69:2455:-183.374,0,-131.222	1/1:139:0,139:0:0:139:4912:-441.639,-41.8432,0	1/1:35:0,35:0:0:35:1256:-113.084,-10.5361,0	1/1:21:0,21:0:0:21:743:-67.1468,-6.32163,0	1/1:44:0,44:0:0:44:1572:-141.589,-13.2453,0	1/1:79:0,79:0:0:79:2814:-253.175,-23.7814,0	1/1:91:0,91:0:0:91:3237:-290.98,-27.3937,0	1/1:46:1,45:1:36:45:1608:-141.061,-10.2491,0	1/1:44:0,44:0:0:44:1540:-138.61,-13.2453,0	0/1:105:48,57:48:1699:57:2000:-148.111,0,-121.545	0/1:68:36,32:36:1284:32:1148:-82.9898,0,-95.3848	1/1:38:0,38:0:0:38:1356:-122.219,-11.4391,0	1/1:60:0,60:0:0:60:2131:-191.685,-18.0618,0	1/1:64:1,63:1:36:63:2242:-197.489,-15.6676,0	1/1:20:1,19:1:36:19:669:-56.8624,-2.42233,0	1/1:28:0,28:0:0:28:996:-89.8234,-8.42884,0	0/1:28:11,17:11:383:17:596:-45.2686,0,-26.3662	1/1:165:2,163:2:72:163:5778:-512.402,-42.8332,0	1/1:104:0,104:0:0:104:3706:-332.254,-31.3071,0	1/1:109:0,109:0:0:109:3895:-350.468,-32.8123,0	1/1:64:0,64:0:0:64:2285:-205.505,-19.2659,0	1/1:74:0,74:0:0:74:2629:-236.472,-22.2762,0	1/1:70:1,69:1:36:69:2468:-218.29,-17.4738,0	0/1:149:68,81:68:2391:81:2887:-214.973,0,-170.589	1/1:196:0,196:0:0:196:6971:-625.908,-59.0019,0	1/1:35:0,35:0:0:35:1243:-112.093,-10.5361,0	1/1:168:0,168:0:0:168:5982:-536.852,-50.573,0	1/1:77:0,77:0:0:77:2730:-245.477,-23.1793,0	1/1:57:0,57:0:0:57:2003:-180.047,-17.1587,0	0/1:7:3,4:3:108:4:144:-11.0655,0,-7.96796	1/1:22:0,22:0:0:22:785:-70.8297,-6.62266,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	1/1:5:0,5:0:0:5:176:-16.1665,-1.50515,0	0/1:21:11,10:11:392:10:356:-26.0132,0,-29.2984	1/1:167:0,167:0:0:167:5930:-532.843,-50.272,0	1/1:70:1,69:1:36:69:2444:-216.308,-17.4738,0	0/1:48:28,20:28:996:20:708:-49.496,0,-75.3151	1/1:2:0,2:0:0:2:72:-6.56353,-0.60206,0	0/1:111:58,53:58:2080:53:1899:-137.592,0,-154.047	0/1:28:7,20:7:252:20:707:-55.2609,0,-14.5388	1/1:44:0,44:0:0:44:1564:-140.727,-13.2453,0	1/1:50:0,50:0:0:50:1762:-158.638,-15.0515,0	1/1:59:0,59:0:0:59:2095:-187.687,-17.7608,0	1/1:74:0,74:0:0:74:2617:-235.604,-22.2762,0	1/1:91:0,91:0:0:91:3212:-288.503,-27.3937,0	1/1:228:0,228:0:0:228:8057:-723.731,-68.6348,0	1/1:77:1,76:1:32:76:2679:-237.891,-19.98,0	0/1:71:26,45:26:910:45:1597:-122.531,0,-60.8409	1/1:132:2,129:2:68:129:4591:-406.363,-33.257,0	1/1:16:0,16:0:0:16:576:-51.9666,-4.81648,0	0/1:84:40,44:40:1432:44:1576:-115.93,0,-103.875	1/1:50:0,50:0:0:50:1770:-159.418,-15.0515,0	1/1:3:0,3:0:0:3:108:-10.0648,-0.90309,0	0/1:114:56,58:56:2000:58:2072:-152.055,0,-145.938	0/1:43:30,13:30:1048:13:459:-28.5759,0,-81.6744	0/1:8:5,3:5:180:3:108:-7.66411,0,-14.1438	1/1:13:0,13:0:0:13:455:-41.269,-3.91339,0	1/1:51:0,51:0:0:51:1815:-163.255,-15.3525,0	0/1:82:39,43:39:1396:43:1532:-113.307,0,-101.251	1/1:5:0,5:0:0:5:176:-16.1706,-1.50515,0	1/1:154:0,154:0:0:154:5490:-493.757,-46.3586,0	1/1:124:0,124:0:0:124:4407:-396.195,-37.3277,0	1/1:56:3,53:3:104:53:1874:-158.995,-7.15487,0	1/1:71:1,70:1:36:70:2516:-222.726,-17.7749,0	1/1:99:0,99:0:0:99:3520:-316.625,-29.802,0	0/1:145:99,46:99:3521:46:1597:-100.269,0,-273.443	1/1:37:1,36:1:36:36:1242:-107.958,-7.53984,0	1/1:23:0,23:0:0:23:811:-73.2134,-6.92369,0	0/1:28:13,15:13:460:15:531:-39.6729,0,-33.3065	1/1:15:0,15:0:0:15:532:-48.0517,-4.51545,0	1/1:109:0,109:0:0:109:3863:-346.664,-32.8123,0	1/1:87:0,87:0:0:87:3095:-278.243,-26.1896,0	1/1:85:0,85:0:0:85:3025:-271.809,-25.5876,0	1/1:108:0,108:0:0:108:3841:-345.183,-32.5112,0	0/1:39:16,23:16:568:23:828:-62.4259,0,-39.7035	0/1:69:31,38:31:1078:38:1355:-101.091,0,-76.5367	1/1:17:0,16:0:0:16:556:-50.0817,-4.81648,0	1/1:71:0,71:0:0:71:2527:-226.989,-21.3731,0	1/1:59:0,59:0:0:59:2111:-189.797,-17.7608,0	1/1:226:0,226:0:0:226:8050:-722.392,-68.0328,0	1/1:42:0,42:0:0:42:1490:-134.024,-12.6433,0	0/1:49:20,29:20:708:29:1022:-77.464,0,-49.2904	0/1:35:22,13:22:767:13:440:-29.3564,0,-58.8134	0/1:103:49,54:49:1716:54:1931:-142.22,0,-123.716	1/1:19:0,19:0:0:19:680:-61.4748,-5.71957,0	1/1:65:0,65:0:0:65:2328:-209.219,-19.567,0	1/1:53:0,53:0:0:53:1883:-169.569,-15.9546,0	0/1:25:13,12:13:464:12:432:-31.6583,0,-34.5718	0/1:71:30,41:30:1071:41:1467:-110.587,0,-75.306	0/1:84:56,28:56:1988:28:983:-63.3427,0,-153.903	1/1:74:0,74:0:0:74:2635:-236.83,-22.2762,0	1/1:113:0,113:0:0:113:4006:-360.138,-34.0164,0
chr03	4568984	.	C	T	26991.6	PASS	AB=0.514725;ABP=11.5797;AC=146;AF=0.776596;AN=188;AO=7627;CIGAR=1X;DP=9856;DPB=9856;DPRA=105.968;EPP=16564.8;EPPR=4828.02;GTI=16;LEN=1;MEANALT=1.07527;MQM=15.992;MQMR=42.3861;NS=94;NUMALT=1;ODDS=0.0798401;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272785;QR=79600;RO=2222;RPL=0;RPP=16564.8;RPPR=4828.02;RPR=7627;RUN=1;SAF=7627;SAP=16564.8;SAR=0;SRF=2222;SRP=4828.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1608:-65.2669,-13.5464,0	1/1:173:0,173:0:0:173:6195:-247.851,-52.0782,0	1/1:123:0,122:0:0:122:4359:-176.347,-36.7257,0	0/1:208:107,101:107:3823:101:3613:-83.357,0,-270.633	1/1:63:0,63:0:0:63:2264:-91.3091,-18.9649,0	1/1:96:0,96:0:0:96:3423:-138.43,-28.8989,0	0/1:176:81,95:81:2900:95:3393:-84.2005,0,-199.755	1/1:168:0,168:0:0:168:5993:-242.828,-50.573,0	0/1:94:44,50:44:1576:50:1765:-43.4539,0,-110.832	1/1:120:0,119:0:0:119:4276:-170.568,-35.8226,0	0/1:74:28,46:28:1004:46:1634:-44.6499,0,-66.1112	1/1:100:0,100:0:0:100:3592:-144.202,-30.103,0	0/1:90:43,47:43:1548:47:1688:-40.2065,0,-108.738	1/1:78:0,78:0:0:78:2808:-113.407,-23.4803,0	0/1:76:35,41:35:1252:41:1476:-35.8077,0,-86.4011	0/1:66:38,28:38:1368:28:974:-20.9992,0,-100.913	1/1:71:0,71:0:0:71:2540:-103.922,-21.3731,0	1/1:69:0,69:0:0:69:2475:-100.456,-20.7711,0	0/1:61:27,34:27:964:34:1224:-33.3474,0,-66.0671	0/1:254:89,164:89:3169:164:5866:-160.867,0,-201.721	0/1:159:73,86:73:2616:86:3073:-77.4463,0,-182.412	1/1:138:0,138:0:0:138:4930:-189.497,-41.5421,0	1/1:117:0,117:0:0:117:4189:-169.484,-35.2205,0	1/1:128:9,119:9:324:119:4261:-142.516,-9.65957,0	0/1:59:32,27:32:1148:27:972:-21.1764,0,-83.6488	0/1:366:180,185:180:6460:185:6583:-139.776,0,-453.628	0/1:230:87,143:87:3120:143:5144:-137.071,0,-204.825	1/1:60:0,60:0:0:60:2156:-87.6395,-18.0618,0	0/1:303:130,173:130:4659:173:6169:-144.813,0,-317.478	1/1:120:1,119:1:36:119:4257:-168.197,-32.6026,0	1/1:163:0,163:0:0:163:5799:-235.284,-49.0679,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.52101	0/1:17:10,7:10:360:7:252:-5.09552,0,-26.9237	1/1:2:0,2:0:0:2:72:-3.03199,-0.60206,0	1/1:9:0,9:0:0:9:324:-12.9951,-2.70927,0	1/1:3:0,3:0:0:3:108:-4.4682,-0.90309,0	1/1:255:0,254:0:0:254:9086:-346.354,-76.4616,0	1/1:197:0,196:0:0:196:7013:-283.458,-59.0019,0	1/1:88:0,88:0:0:88:3160:-127.404,-26.4906,0	0/1:5:2,3:2:72:3:108:-2.96305,0,-5.18477	0/1:203:109,94:109:3916:94:3364:-72.9513,0,-283.239	0/1:44:24,20:24:860:20:720:-17.75,0,-62.8403	1/1:168:1,167:1:36:167:5975:-237.611,-46.9996,0	1/1:99:0,99:0:0:99:3556:-145.036,-29.802,0	1/1:74:0,74:0:0:74:2607:-107.27,-22.2762,0	0/1:113:68,45:68:2436:45:1603:-26.8913,0,-178.983	1/1:85:0,85:0:0:85:3025:-122.2,-25.5876,0	0/1:146:82,64:82:2932:64:2295:-48.9875,0,-211.925	0/1:117:51,66:51:1824:66:2361:-60.216,0,-124.114	0/1:101:48,53:48:1728:53:1908:-46.576,0,-120.469	1/1:177:0,177:0:0:177:6335:-243.176,-53.2823,0	0/1:10:3,7:3:108:7:252:-7.20273,0,-6.88646	0/1:205:94,111:94:3364:111:3961:-100.039,0,-234.447	1/1:72:0,72:0:0:72:2588:-97.3087,-21.6742,0	1/1:20:0,20:0:0:20:720:-28.8837,-6.0206,0	1/1:147:0,147:0:0:147:5244:-212.792,-44.2514,0	0/1:68:29,39:29:1044:39:1404:-35.956,0,-71.2301	1/1:1:0,1:0:0:1:36:-1.59579,-0.30103,0	0/1:10:2,8:2:72:8:288:-8.71554,0,-3.64483	1/1:60:0,60:0:0:60:2148:-86.315,-18.0618,0	0/1:120:64,56:64:2300:56:1989:-43.8822,0,-165.352	0/1:3:1,2:1:36:2:72:-2.1289,0,-2.59961	1/1:166:0,166:0:0:166:5945:-225.496,-49.971,0	0/1:180:86,94:86:3067:94:3332:-82.9777,0,-214.663	0/1:70:31,39:31:1097:39:1404:-37.116,0,-75.5013	1/1:92:0,92:0:0:92:3266:-132.319,-27.6948,0	1/1:156:0,156:0:0:156:5566:-227.574,-46.9607,0	0/1:115:90,25:90:3236:25:884:-1.65348,0,-248.016	1/1:30:0,30:0:0:30:1080:-42.6182,-9.0309,0	0/1:84:54,30:54:1927:30:1080:-17.8698,0,-143.431	1/1:83:0,83:0:0:83:2975:-115.651,-24.9855,0	1/1:20:0,20:0:0:20:720:-29.5876,-6.0206,0	1/1:116:0,116:0:0:116:4151:-167.303,-34.9195,0	0/1:56:34,22:34:1224:22:769:-16.945,0,-91.1168	0/1:190:83,107:83:2950:107:3813:-100.619,0,-202.884	1/1:144:1,143:1:36:143:5136:-204.112,-39.7749,0	1/1:108:0,108:0:0:108:3880:-154.633,-32.5112,0	0/1:84:43,40:43:1544:40:1425:-32.2519,0,-111.157	1/1:10:0,10:0:0:10:360:-14.5217,-3.0103,0	1/1:85:1,84:1:36:84:3020:-118.139,-22.0665,0	1/1:87:1,86:1:36:86:3084:-120.47,-22.6686,0	1/1:239:0,239:0:0:239:8555:-343.735,-71.9462,0	0/1:136:61,75:61:2184:75:2700:-66.4738,0,-150.09	1/1:65:0,65:0:0:65:2340:-93.2305,-19.567,0	1/1:73:0,73:0:0:73:2590:-106.383,-21.9752,0	1/1:169:2,167:2:72:167:5996:-239.872,-44.2189,0	0/1:49:22,27:22:792:27:972:-24.0076,0,-55.2574	1/1:72:0,72:0:0:72:2591:-104.52,-21.6742,0	1/1:84:0,84:0:0:84:3005:-121.938,-25.2865,0	0/1:37:18,19:18:644:19:680:-16.8336,0,-45.9336	0/1:97:45,52:45:1616:52:1853:-47.9835,0,-113.515	0/1:74:57,17:57:2048:17:608:-2.11346,0,-157.464	1/1:99:0,99:0:0:99:3500:-144.467,-29.802,0	1/1:118:0,118:0:0:118:4232:-170.281,-35.5215,0
chr03	4568985	.	G	A	36684.6	PASS	AB=0.489517;ABP=7.33551;AC=42;AF=0.223404;AN=188;AO=2233;CIGAR=1X;DP=9804;DPB=9804;DPRA=1.14061;EPP=4851.91;EPPR=16436.7;GTI=16;LEN=1;MEANALT=1.04348;MQM=42.356;MQMR=16.0122;NS=94;NUMALT=1;ODDS=0.213301;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80029;QR=269926;RO=7568;RPL=0;RPP=4851.91;RPPR=16436.7;RPR=2233;RUN=1;SAF=2233;SAP=4851.91;SAR=0;SRF=7568;SRP=16436.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1580:0:0:0,-13.2453,-63.8421	0/0:172:172,0:172:6141:0:0:0,-51.7772,-247.004	0/0:121:121,0:121:4280:0:0:0,-36.4246,-175.968	0/1:206:99,107:99:3541:107:3833:-271.705,0,-81.2654	0/0:64:64,0:64:2281:0:0:0,-19.2659,-92.6574	0/0:95:95,0:95:3374:0:0:0,-28.5978,-136.794	0/1:176:94,82:94:3357:82:2944:-203.766,0,-82.0635	0/0:166:166,0:166:5907:0:0:0,-49.971,-239.729	0/1:92:47,45:47:1669:45:1582:-112.091,0,-39.7643	0/0:117:117,0:117:4144:0:0:0,-35.2205,-168.06	0/1:73:45,28:45:1601:28:1008:-66.7516,0,-43.8219	0/0:99:99,0:99:3545:0:0:0,-29.802,-142.67	0/1:91:48,43:48:1728:43:1544:-108.15,0,-41.3462	0/0:80:80,0:80:2841:0:0:0,-24.0824,-117.453	0/1:74:39,35:39:1404:35:1260:-87.6244,0,-33.5373	0/1:66:27,39:27:953:39:1404:-104.082,0,-19.6647	0/0:70:70,0:70:2520:0:0:0,-21.0721,-101.835	0/0:69:69,0:69:2457:0:0:0,-20.7711,-100.363	0/1:62:35,27:35:1248:27:968:-66.0861,0,-34.4652	0/1:252:161,91:161:5757:91:3237:-208.094,0,-156.743	0/1:158:84,74:84:3012:74:2660:-186.35,0,-74.2698	0/0:137:137,0:137:4901:0:0:0,-41.2411,-188.118	0/0:118:118,0:118:4171:0:0:0,-35.5215,-171.209	0/0:129:120,9:120:4221:9:324:0,-9.9606,-143.526	0/1:60:28,32:28:1004:32:1152:-83.6353,0,-22.3059	0/1:364:183,180:183:6486:180:6464:-455.492,0,-138.929	0/1:232:143,89:143:5110:89:3188:-209.598,0,-136.26	0/0:59:59,0:59:2124:0:0:0,-17.7608,-86.2091	0/1:299:169,130:169:6042:130:4676:-319.908,0,-138.224	0/0:120:119,1:119:4223:1:36:0,-32.6026,-168.143	0/0:161:161,0:161:5747:0:0:0,-48.4658,-231.283	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	0/1:17:7,10:7:252:10:360:-26.9237,0,-5.09552	0/0:2:2,0:2:72:0:0:0,-0.60206,-3.03199	0/0:9:9,0:9:324:0:0:0,-2.70927,-12.9951	0/0:3:3,0:3:108:0:0:0,-0.90309,-4.4682	0/0:255:255,0:255:9123:0:0:0,-76.7626,-347.958	0/0:192:192,0:192:6862:0:0:0,-57.7978,-278.308	0/0:85:85,0:85:3052:0:0:0,-25.5875,-123.075	0/1:5:3,2:3:104:2:72:-5.18477,0,-2.95718	0/1:203:93,109:93:3320:109:3909:-283.2,0,-71.6728	0/1:44:20,24:20:720:24:864:-63.1606,0,-17.75	0/0:170:170,0:170:6043:0:0:0,-51.1751,-246.968	0/0:97:97,0:97:3473:0:0:0,-29.1999,-142.068	0/0:73:73,0:73:2609:0:0:0,-21.9752,-105.316	0/1:113:45,68:45:1616:68:2431:-179.231,0,-26.9224	0/0:85:85,0:85:3043:0:0:0,-25.5875,-122.365	0/1:144:62,82:62:2209:82:2933:-212.229,0,-46.6164	0/1:117:65,52:65:2317:52:1872:-128.114,0,-58.7021	0/1:102:54,48:54:1936:48:1728:-120.168,0,-47.3135	0/0:176:176,0:176:6248:0:0:0,-52.9813,-241.574	0/1:10:7,3:7:252:3:108:-6.88646,0,-7.20273	0/1:203:111,92:111:3897:92:3300:-229.104,0,-99.8193	0/0:73:73,0:73:2586:0:0:0,-21.9752,-99.2321	0/0:20:20,0:20:712:0:0:0,-6.0206,-28.8723	0/0:147:146,0:146:5217:0:0:0,-43.9504,-211.226	0/1:70:40,30:40:1410:30:1065:-72.5405,0,-36.2836	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.59579	0/1:10:8,2:8:284:2:72:-3.64483,0,-8.71099	0/0:58:58,0:58:2050:0:0:0,-17.4597,-83.2454	0/1:120:56,64:56:2008:64:2300:-165.343,0,-43.9937	0/1:3:2,1:2:72:1:36:-2.59961,0,-2.1289	0/0:163:163,0:163:5847:0:0:0,-49.0679,-220.811	0/1:180:93,87:93:3276:87:3120:-218.712,0,-81.1373	0/1:71:40,31:40:1421:31:1116:-76.7595,0,-38.0544	0/0:91:91,0:91:3264:0:0:0,-27.3937,-131.764	0/0:156:156,0:156:5559:0:0:0,-46.9607,-227.849	0/1:116:25,91:25:896:91:3244:-248.682,0,-1.40162	0/0:31:31,0:31:1112:0:0:0,-9.33193,-44.0488	0/1:84:30,54:30:1072:54:1933:-143.503,0,-17.8584	0/0:81:81,0:81:2885:0:0:0,-24.3834,-112.816	0/0:19:19,0:19:665:0:0:0,-5.71957,-28.0441	0/0:113:113,0:113:4045:0:0:0,-34.0164,-163.319	0/1:54:21,33:21:752:33:1176:-87.7109,0,-16.2188	0/1:189:103,86:103:3673:86:3077:-214.466,0,-95.2411	0/0:144:144,0:144:5104:0:0:0,-43.3483,-210.01	0/0:110:110,0:110:3941:0:0:0,-33.1133,-157.321	0/1:84:41,43:41:1468:43:1529:-109.397,0,-35.4415	0/0:10:10,0:10:360:0:0:0,-3.0103,-14.5217	0/0:87:86,1:86:3092:1:36:0,-22.6686,-120.922	0/0:86:85,1:85:3045:1:36:0,-22.3676,-118.436	0/0:240:240,0:240:8544:0:0:0,-72.2472,-345.527	0/1:138:76,62:76:2713:62:2228:-153.259,0,-67.1952	0/0:64:64,0:64:2285:0:0:0,-19.2659,-91.6872	0/0:74:74,0:74:2648:0:0:0,-22.2762,-108.032	0/0:166:164,2:164:5846:2:72:0,-43.3158,-235.522	0/1:48:26,22:26:932:22:792:-55.5585,0,-22.8667	0/0:72:72,0:72:2588:0:0:0,-21.6742,-104.515	0/0:82:82,0:82:2914:0:0:0,-24.6845,-119.102	0/1:34:16,18:16:576:18:648:-47.1574,0,-12.9039	0/1:93:48,45:48:1720:45:1616:-114.719,0,-43.539	0/1:74:17,57:17:612:57:2040:-156.835,0,-2.11916	0/0:99:99,0:99:3547:0:0:0,-29.802,-144.843	0/0:117:117,0:117:4200:0:0:0,-35.2205,-168.585
chr03	5279789	.	A	G	12230.8	PASS	AB=0.557994;ABP=40.2861;AC=28;AF=0.152174;AN=184;AO=716;CIGAR=1X;DP=4214;DPB=4214;DPRA=1.09539;EPP=1557.78;EPPR=7596.65;GTI=0;LEN=1;MEANALT=1.03125;MQM=59.4818;MQMR=59.9008;NS=92;NUMALT=1;ODDS=0.99697;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25607;QR=125162;RO=3497;RPL=716;RPP=1557.78;RPPR=7596.65;RPR=0;RUN=1;SAF=0;SAP=1557.78;SAR=716;SRF=0;SRP=7596.65;SRR=3497;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:14,14:14:504:14:493:-36.2498,0,-37.2693	0/1:46:21,25:21:733:25:900:-67.4573,0,-52.4423	0/1:73:33,40:33:1158:40:1424:-106.284,0,-82.5471	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.889	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.034	0/0:37:37,0:37:1298:0:0:0,-11.1381,-116.927	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:62:31,30:31:1116:30:1076:-78.3677,0,-82.029	0/1:52:26,26:26:936:26:928:-68.1765,0,-68.9059	0/0:43:43,0:43:1521:0:0:0,-12.9443,-137.181	0/0:36:35,1:35:1260:1:36:0,-7.2388,-110.107	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:48:48,0:48:1713:0:0:0,-14.4494,-153.826	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.227	0/1:122:52,70:52:1864:70:2494:-187.946,0,-131.314	0/0:124:124,0:124:4430:0:0:0,-37.3277,-398.869	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2166	0/0:143:143,0:143:5125:0:0:0,-43.0473,-461.387	0/0:58:57,1:57:2052:1:36:0,-13.8705,-181.362	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	.:.:.:.:.:.:.:.	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:8:1,7:1:36:7:252:-20.6124,0,-1.19003	0/0:137:137,0:137:4897:0:0:0,-41.2411,-440.825	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:30:21,9:21:741:9:317:-19.8368,0,-57.9807	0/1:20:5,15:5:180:15:540:-42.9159,0,-10.5315	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.58	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.646	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.089	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.66	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:74:41,33:41:1472:33:1170:-83.3269,0,-110.498	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:72:32,40:32:1152:40:1436:-107.86,0,-82.316	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	.:.:.:.:.:.:.:.	0/1:76:24,52:24:856:52:1868:-144.876,0,-54.4828	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.697	0/1:109:50,59:50:1796:59:2116:-157.875,0,-129.11	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:71:71,0:71:2541:0:0:0,-21.3731,-228.936	0/0:33:32,1:32:1152:1:36:0,-6.35094,-100.407	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8418	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.158	0/1:58:16,42:16:561:42:1504:-117.004,0,-33.3574	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:46:20,26:20:712:26:936:-70.703,0,-50.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/0:76:76,0:76:2721:0:0:0,-22.8783,-245.131	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.191	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.43	0/1:61:30,31:30:1080:31:1116:-82.3889,0,-79.1504	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:26:26,0:26:936:0:0:0,-7.82678,-83.4525	0/0:151:150,1:150:5332:1:21:0,-43.3556,-477.91	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/1:65:28,37:28:1008:37:1323:-99.7997,0,-71.4694	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1612	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:26:13,13:13:468:13:453:-33.2728,0,-34.4416	0/1:69:29,40:29:1040:40:1436:-108.722,0,-73.1433	0/1:52:11,41:11:396:41:1468:-116.706,0,-20.3292	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.472	0/0:63:63,0:63:2264:0:0:0,-18.9649,-202.918
chr03	5312180	.	G	C	135997	PASS	AB=0.486498;ABP=6.76319;AC=159;AF=0.845745;AN=188;AO=6285;CIGAR=1X;DP=7533;DPB=7533;DPRA=80.9892;EPP=13616;EPPR=2689.12;GTI=1;LEN=1;MEANALT=1.10753;MQM=59.9239;MQMR=59.9685;NS=94;NUMALT=1;ODDS=0.934358;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222711;QR=44022;RO=1237;RPL=6281;RPP=13616;RPPR=2689.12;RPR=4;RUN=1;SAF=6285;SAP=13650.7;SAR=0;SRF=1237;SRP=2689.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:123:48,74:48:1720:74:2631:-199.952,0,-118	0/1:69:37,31:37:1311:31:1080:-76.6738,0,-97.4612	1/1:130:0,129:0:0:129:4586:-412.533,-38.8329,0	1/1:54:0,54:0:0:54:1905:-171.726,-16.2556,0	1/1:51:0,51:0:0:51:1806:-162.819,-15.3525,0	1/1:48:0,48:0:0:48:1702:-153.463,-14.4494,0	1/1:131:0,130:0:0:130:4610:-414.84,-39.1339,0	1/1:62:0,62:0:0:62:2212:-199.343,-18.6639,0	1/1:70:0,70:0:0:70:2488:-224.171,-21.0721,0	1/1:98:0,98:0:0:98:3442:-309.993,-29.5009,0	0/1:86:42,44:42:1456:44:1527:-111.827,0,-105.44	0/1:93:48,45:48:1701:45:1611:-117.284,0,-125.378	1/1:82:0,82:0:0:82:2915:-262.583,-24.6845,0	1/1:80:0,80:0:0:80:2833:-255.205,-24.0824,0	1/1:90:0,90:0:0:90:3214:-289.482,-27.0927,0	1/1:70:0,69:0:0:69:2442:-219.823,-20.7711,0	1/1:71:0,71:0:0:71:2518:-226.872,-21.3731,0	0/1:63:32,31:32:1125:31:1086:-79.0827,0,-82.5911	1/1:77:0,77:0:0:77:2726:-245.582,-23.1793,0	1/1:75:0,75:0:0:75:2679:-241.336,-22.5773,0	1/1:33:1,32:1:36:32:1125:-97.8262,-6.33572,0	1/1:46:2,44:2:72:44:1565:-134.298,-7.01066,0	1/1:90:0,90:0:0:90:3197:-287.951,-27.0927,0	1/1:66:0,65:0:0:65:2281:-205.192,-19.567,0	0/1:204:115,89:115:4089:89:3142:-221.55,0,-306.786	1/1:107:0,106:0:0:106:3751:-337.25,-31.9092,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:152:0,152:0:0:152:5413:-487.3,-45.7566,0	1/1:153:2,151:2:72:151:5367:-476.314,-39.2257,0	1/1:82:0,82:0:0:82:2873:-258.807,-24.6845,0	0/1:9:4,5:4:144:5:171:-13.0158,0,-10.6043	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:236:0,235:0:0:235:8313:-747.822,-70.7421,0	1/1:159:0,159:0:0:159:5630:-506.804,-47.8638,0	0/1:90:46,44:46:1648:44:1536:-111.379,0,-121.498	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:146:66,80:66:2364:80:2803:-208.557,0,-169.068	0/1:35:17,18:17:612:18:644:-47.7545,0,-44.8774	1/1:70:0,70:0:0:70:2478:-223.255,-21.0721,0	1/1:78:0,78:0:0:78:2777:-250.151,-23.4803,0	1/1:94:1,93:1:36:93:3305:-294.064,-24.6985,0	1/1:67:0,67:0:0:67:2388:-215.178,-20.169,0	1/1:113:0,113:0:0:113:3966:-357.133,-34.0164,0	1/1:158:0,158:0:0:158:5580:-502.326,-47.5627,0	1/1:65:0,65:0:0:65:2322:-209.238,-19.567,0	0/1:92:37,55:37:1314:55:1967:-149.61,0,-90.8655	1/1:100:1,99:1:36:99:3502:-311.792,-26.5047,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:69:27,42:27:968:42:1491:-113.713,0,-66.6663	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:114:68,46:68:2432:46:1608:-110.688,0,-184.818	0/1:20:8,12:8:288:12:404:-30.662,0,-20.2468	0/1:9:3,6:3:108:6:198:-15.434,0,-7.3659	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:81:0,79:0:0:79:2819:-253.589,-23.7814,0	0/1:126:63,63:63:2222:63:2226:-162.671,0,-162.312	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:194:0,194:0:0:194:6912:-622.149,-58.3998,0	1/1:141:4,137:4:144:137:4870:-425.126,-29.1316,0	1/1:89:8,81:8:288:81:2832:-228.852,-0.524263,0	1/1:73:0,73:0:0:73:2604:-234.584,-21.9752,0	1/1:90:0,89:0:0:89:3175:-285.615,-26.7917,0	0/1:101:64,37:64:2286:37:1332:-89.7784,0,-175.596	1/1:36:2,34:2:68:34:1212:-102.976,-4.42664,0	1/1:49:0,49:0:0:49:1737:-156.614,-14.7505,0	0/1:106:56,50:56:1982:50:1800:-130.373,0,-146.744	1/1:19:0,19:0:0:19:663:-59.9935,-5.71957,0	1/1:90:0,90:0:0:90:3187:-287.054,-27.0927,0	1/1:61:0,61:0:0:61:2162:-194.838,-18.3628,0	1/1:137:0,137:0:0:137:4840:-435.747,-41.2411,0	1/1:75:0,75:0:0:75:2674:-240.905,-22.5773,0	0/1:117:68,49:68:2401:49:1740:-121.164,0,-181.126	0/1:77:51,26:51:1836:26:914:-59.3954,0,-142.341	1/1:19:0,19:0:0:19:672:-60.8016,-5.71957,0	1/1:78:0,78:0:0:78:2798:-252.055,-23.4803,0	1/1:76:0,76:0:0:76:2693:-242.613,-22.8783,0	1/1:167:0,167:0:0:167:5921:-532.998,-50.272,0	1/1:105:0,105:0:0:105:3714:-334.458,-31.6082,0	0/1:87:50,37:50:1760:37:1324:-93.2725,0,-132.491	0/1:99:37,62:37:1328:62:2180:-166.66,0,-90.0203	0/1:166:81,85:81:2876:85:3000:-220.259,0,-209.101	1/1:33:0,33:0:0:33:1151:-103.893,-9.93399,0	1/1:76:0,76:0:0:76:2694:-242.667,-22.8783,0	1/1:81:0,81:0:0:81:2847:-256.468,-24.3834,0	0/1:66:31,35:31:1108:35:1247:-92.6661,0,-80.163	0/1:115:65,50:65:2319:50:1783:-126.134,0,-174.351	0/1:76:47,29:47:1692:29:1007:-68.0596,0,-129.689	1/1:102:0,102:0:0:102:3630:-326.903,-30.7051,0	1/1:105:0,105:0:0:105:3718:-334.802,-31.6082,0
chr03	5312308	.	T	C	181735	PASS	AB=0.441451;ABP=85.9038;AC=160;AF=0.851064;AN=188;AO=8233;CIGAR=1X;DP=9805;DPB=9805;DPRA=21.0753;EPP=17880.7;EPPR=3381.91;GTI=2;LEN=1;MEANALT=1;MQM=59.9868;MQMR=59.9968;NS=94;NUMALT=1;ODDS=0.383003;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=294541;QR=56223;RO=1572;RPL=0;RPP=17880.7;RPPR=3381.91;RPR=8233;RUN=1;SAF=8233;SAP=17880.7;SAR=0;SRF=1572;SRP=3416.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:21,36:21:752:36:1284:-98.7047,0,-50.8475	0/1:148:84,64:84:2997:64:2284:-161.27,0,-225.408	0/1:103:59,44:59:2107:44:1572:-110.766,0,-158.892	1/1:301:0,301:0:0:301:10792:-971.175,-90.61,0	1/1:85:0,85:0:0:85:3040:-273.83,-25.5876,0	1/1:60:0,60:0:0:60:2140:-192.868,-18.0618,0	1/1:115:0,115:0:0:115:4128:-371.702,-34.6185,0	1/1:227:0,227:0:0:227:8132:-731.895,-68.3338,0	1/1:99:0,99:0:0:99:3540:-318.809,-29.802,0	1/1:99:0,99:0:0:99:3552:-319.843,-29.802,0	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	0/1:73:29,44:29:1032:44:1572:-119.796,0,-71.2183	0/1:98:51,47:51:1820:47:1688:-122.706,0,-134.58	1/1:125:0,125:0:0:125:4461:-401.66,-37.6288,0	1/1:99:0,99:0:0:99:3556:-320.225,-29.802,0	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	1/1:101:0,101:0:0:101:3605:-324.655,-30.404,0	1/1:95:1,94:1:36:94:3380:-300.816,-24.9996,0	0/1:46:29,17:29:1036:17:608:-41.2046,0,-79.7065	1/1:116:0,116:0:0:116:4125:-371.434,-34.9195,0	1/1:212:0,212:0:0:212:7611:-685.025,-63.8184,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:45:0,45:0:0:45:1612:-145.179,-13.5464,0	1/1:162:0,162:0:0:162:5791:-521.304,-48.7669,0	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	0/1:262:146,116:146:5233:116:4152:-294.993,0,-392.235	1/1:211:0,211:0:0:211:7539:-678.552,-63.5173,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:215:0,215:0:0:215:7649:-688.451,-64.7215,0	1/1:107:2,105:2:72:105:3764:-332.122,-25.3735,0	1/1:265:0,265:0:0:265:9492:-854.238,-79.773,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:249:0,249:0:0:249:8891:-800.177,-74.9565,0	1/1:144:2,142:2:68:142:5100:-452.684,-36.8906,0	0/1:55:32,23:32:1144:23:820:-57.5659,0,-86.7129	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:166:102,64:102:3628:64:2296:-156.93,0,-276.754	0/1:39:27,12:27:972:12:432:-27.481,0,-76.0577	1/1:177:0,177:0:0:177:6352:-571.769,-53.2823,0	1/1:103:0,103:0:0:103:3692:-332.482,-31.0061,0	1/1:95:0,95:0:0:95:3391:-305.404,-28.5979,0	1/1:75:0,75:0:0:75:2668:-240.367,-22.5773,0	1/1:152:0,152:0:0:152:5428:-488.651,-45.7566,0	1/1:154:0,154:0:0:154:5508:-495.846,-46.3586,0	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	0/1:198:116,82:116:4160:82:2932:-204.511,0,-314.978	1/1:90:0,90:0:0:90:3213:-289.391,-27.0927,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:94:63,31:63:2251:31:1108:-71.7342,0,-174.556	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:130:82,48:82:2948:48:1704:-114.512,0,-226.419	0/1:61:38,23:38:1360:23:828:-56.4813,0,-104.338	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:134:67,67:67:2412:67:2396:-175.559,0,-176.998	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:143:0,143:0:0:143:5097:-458.874,-43.0473,0	1/1:220:0,220:0:0:220:7880:-709.226,-66.2266,0	1/1:68:2,66:2:72:66:2337:-203.752,-13.6333,0	1/1:66:0,66:0:0:66:2368:-213.333,-19.868,0	1/1:141:0,141:0:0:141:5040:-453.747,-42.4452,0	0/1:86:56,30:56:2008:30:1080:-71.6247,0,-155.105	1/1:36:1,35:1:36:35:1248:-109.027,-7.23881,0	1/1:77:0,77:0:0:77:2748:-247.563,-23.1793,0	0/1:105:53,52:53:1904:52:1845:-134.72,0,-140.026	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:80:1,79:1:36:79:2817:-250.168,-20.4841,0	1/1:48:0,48:0:0:48:1700:-153.286,-14.4494,0	1/1:475:0,475:0:0:475:17002:-1529.81,-142.989,0	1/1:145:0,145:0:0:145:5193:-467.507,-43.6494,0	0/1:125:95,30:95:3388:30:1076:-59.5241,0,-267.508	0/1:166:101,65:101:3577:65:2311:-158.28,0,-272.165	1/1:14:0,14:0:0:14:496:-44.9737,-4.21442,0	1/1:159:2,157:2:72:157:5616:-498.725,-41.027,0	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	1/1:176:0,176:0:0:176:6308:-567.811,-52.9813,0	1/1:144:0,144:0:0:144:5160:-464.54,-43.3483,0	0/1:91:41,50:41:1468:50:1796:-134.529,0,-105.022	0/1:143:72,71:72:2570:71:2548:-186.523,0,-188.501	0/1:208:98,110:98:3516:110:3935:-291.728,0,-254.035	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:103:0,103:0:0:103:3692:-332.482,-31.0061,0	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	0/1:44:14,30:14:504:30:1080:-84.2679,0,-32.4528	0/1:79:38,41:38:1356:41:1476:-109.355,0,-98.5591	0/1:67:36,31:36:1292:31:1100:-79.1413,0,-96.4148	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	1/1:139:1,138:1:36:138:4944:-441.511,-38.2449,0
chr03	5312317	.	G	A	27629.1	PASS	AB=0.555674;ABP=78.9318;AC=28;AF=0.148936;AN=188;AO=1584;CIGAR=1X;DP=9946;DPB=9946;DPRA=1.03694;EPP=3347.74;EPPR=18145.7;GTI=2;LEN=1;MEANALT=1.02857;MQM=59.9968;MQMR=59.984;NS=94;NUMALT=1;ODDS=0.7268;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56220;QR=298066;RO=8355;RPL=11;RPP=3347.74;RPPR=18145.7;RPR=1573;RUN=1;SAF=1584;SAP=3442.62;SAR=0;SRF=8355;SRP=18145.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:35,21:35:1222:21:752:-51.1486,0,-93.4218	0/1:154:68,86:68:2399:86:3033:-226.843,0,-169.804	0/1:104:45,59:45:1608:59:2090:-157.063,0,-113.703	0/0:303:303,0:303:10799:0:0:0,-91.2121,-971.809	0/0:87:87,0:87:3113:0:0:0,-26.1896,-280.395	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/0:116:116,0:116:4141:0:0:0,-34.9195,-372.872	0/0:226:225,0:225:7982:0:0:0,-67.7317,-718.041	0/0:102:102,0:102:3630:0:0:0,-30.7051,-326.903	0/0:102:102,0:102:3618:0:0:0,-30.7051,-325.806	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:73:44,29:44:1576:29:1044:-72.2996,0,-120.156	0/1:101:48,53:48:1724:53:1880:-139.072,0,-125.041	0/0:127:127,0:127:4549:0:0:0,-38.2308,-409.574	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.294	0/0:75:74,0:74:2664:0:0:0,-22.2762,-239.645	0/0:106:106,0:106:3778:0:0:0,-31.9092,-340.217	0/0:95:95,0:95:3411:0:0:0,-28.5978,-307.203	0/1:48:18,30:18:648:30:1061:-81.3499,0,-44.2024	0/0:116:115,0:115:4117:0:0:0,-34.6184,-370.353	0/0:214:214,0:214:7541:0:0:0,-64.4204,-678.73	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.246	0/0:161:161,0:161:5765:0:0:0,-48.4658,-518.963	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:257:114,143:114:4070:143:5026:-375.121,0,-289.119	0/0:212:212,0:212:7569:0:0:0,-63.8184,-681.25	0/0:59:59,0:59:2109:0:0:0,-17.7608,-190.077	0/0:219:218,0:218:7771:0:0:0,-65.6245,-699.06	0/0:104:102,2:102:3649:2:72:0,-24.4704,-321.776	0/0:271:271,0:271:9637:0:0:0,-81.5791,-867.282	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:253:253,0:253:9061:0:0:0,-76.1606,-815.464	0/0:151:149,2:149:5291:2:72:0,-38.6188,-469.476	0/1:57:22,35:22:792:35:1229:-93.7532,0,-54.447	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:171:66,105:66:2360:105:3736:-284.965,0,-161.183	0/1:41:13,28:13:468:28:996:-77.6127,0,-30.1174	0/0:183:183,0:183:6500:0:0:0,-55.0885,-585.083	0/0:104:104,0:104:3721:0:0:0,-31.3071,-335.09	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.016	0/0:154:154,0:154:5505:0:0:0,-46.3586,-495.575	0/0:163:163,0:163:5773:0:0:0,-49.0679,-519.675	0/0:86:86,0:86:3028:0:0:0,-25.8886,-272.746	0/1:202:83,119:83:2956:119:4242:-321.149,0,-205.467	0/0:91:90,0:90:3209:0:0:0,-27.0927,-288.672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:96:32,64:32:1144:64:2296:-178.002,0,-74.3706	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:127:47,80:47:1654:80:2868:-220.126,0,-110.913	0/1:61:23,38:23:824:38:1364:-104.698,0,-56.1205	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5607	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/1:135:69,66:69:2468:66:2348:-170.939,0,-181.735	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:144:144,0:144:5161:0:0:0,-43.3483,-464.628	0/0:220:219,1:219:7853:1:36:0,-62.6283,-703.195	0/0:69:67,2:67:2408:2:72:0,-13.9343,-210.139	0/0:71:70,0:70:2489:0:0:0,-21.0721,-223.901	0/0:143:143,0:143:5080:0:0:0,-43.0473,-457.341	0/1:87:31,56:31:1101:56:2000:-154.084,0,-73.2088	0/0:36:35,1:35:1260:1:36:0,-7.2388,-110.107	0/0:78:78,0:78:2754:0:0:0,-23.4803,-248.1	0/1:108:54,54:54:1936:54:1905:-139.211,0,-142.005	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:81:80,1:80:2868:1:36:0,-20.7852,-254.755	0/0:51:51,0:51:1798:0:0:0,-15.3525,-162.098	0/0:480:480,0:480:17072:0:0:0,-144.494,-1536.11	0/0:146:146,0:146:5217:0:0:0,-43.9504,-469.668	0/1:124:29,94:29:1029:94:3299:-259.74,0,-55.5348	0/1:164:65,99:65:2340:99:3510:-266.74,0,-161.49	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:160:158,2:158:5614:2:72:0,-41.3281,-498.544	0/0:98:98,0:98:3486:0:0:0,-29.5009,-313.949	0/0:178:178,0:178:6377:0:0:0,-53.5833,-574.017	0/0:148:148,0:148:5312:0:0:0,-44.5524,-478.213	0/1:96:53,43:53:1904:43:1540:-109.994,0,-142.739	0/1:144:73,71:73:2628:71:2519:-183.613,0,-193.418	0/1:211:111,100:111:3977:100:3561:-257.179,0,-294.601	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/0:74:74,0:74:2611:0:0:0,-22.2762,-235.234	0/1:45:32,13:32:1152:13:464:-28.5512,0,-90.4438	0/1:79:41,38:41:1468:38:1328:-96.0364,0,-108.635	0/1:74:35,39:35:1241:39:1377:-101.95,0,-89.7163	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.96	0/0:142:141,1:141:5060:1:36:0,-39.148,-451.945
chr03	5312381	.	G	A	21643.6	PASS	AB=0.483309;ABP=9.53438;AC=28;AF=0.148936;AN=188;AO=1317;CIGAR=1X;DP=9346;DPB=9346;DPRA=1.05251;EPP=2845.49;EPPR=17379.2;GTI=0;LEN=1;MEANALT=1.02778;MQM=59.981;MQMR=59.9973;NS=94;NUMALT=1;ODDS=1.35576;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47043;QR=285478;RO=8022;RPL=2;RPP=2845.49;RPPR=17379.2;RPR=1315;RUN=1;SAF=0;SAP=2862.84;SAR=1317;SRF=0;SRP=17422.6;SRR=8022;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:29,36:29:1036:36:1292:-96.9471,0,-73.987	0/1:79:50,29:50:1784:29:1026:-68.8705,0,-137.061	0/1:188:111,77:111:3971:77:2755:-191.598,0,-300.987	0/0:206:206,0:206:7339:0:0:0,-62.0122,-660.561	0/0:67:65,2:65:2319:2:72:0,-13.3323,-202.133	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.665	0/0:136:135,0:135:4776:0:0:0,-40.639,-429.76	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/0:77:77,0:77:2739:0:0:0,-23.1793,-246.753	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/1:138:72,66:72:2580:66:2353:-170.485,0,-190.907	0/1:117:54,63:54:1855:63:2251:-167.632,0,-132.001	0/0:69:69,0:69:2423:0:0:0,-20.7711,-218.325	0/0:101:101,0:101:3569:0:0:0,-30.404,-321.417	0/0:77:77,0:77:2763:0:0:0,-23.1793,-248.91	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/0:37:37,0:37:1300:0:0:0,-11.1381,-117.298	0/1:56:33,23:33:1180:23:819:-57.1739,0,-89.6504	0/0:276:276,0:276:9849:0:0:0,-83.0843,-886.356	0/0:142:142,0:142:5052:0:0:0,-42.7463,-454.829	0/0:121:120,0:120:4260:0:0:0,-36.1236,-383.22	0/0:138:138,0:138:4923:0:0:0,-41.5421,-443.222	0/0:74:74,0:74:2629:0:0:0,-22.2762,-236.856	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/1:213:127,86:127:4514:86:3061:-211.599,0,-342.311	0/0:277:276,1:276:9828:1:36:0,-79.787,-880.869	0/0:55:55,0:55:1945:0:0:0,-16.5566,-175.324	0/0:168:168,0:168:5993:0:0:0,-50.573,-539.476	0/0:116:114,2:114:4063:2:72:0,-28.0828,-359.021	0/0:136:136,0:136:4859:0:0:0,-40.9401,-437.464	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:29:28,0:28:1004:0:0:0,-8.42884,-90.3115	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/1:21:12,9:12:424:9:324:-23.1842,0,-32.1748	0/0:230:230,0:230:8215:0:0:0,-69.2369,-739.362	0/0:90:90,0:90:3202:0:0:0,-27.0927,-288.403	0/1:68:40,28:40:1436:28:1008:-70.5663,0,-109.068	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:158:64,94:64:2267:94:3373:-256.222,0,-156.73	0/1:50:21,29:21:743:29:1025:-77.5092,0,-52.1418	0/0:183:183,0:183:6470:0:0:0,-55.0885,-582.393	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/0:81:80,0:80:2856:0:0:0,-24.0824,-256.916	0/0:105:104,1:104:3697:1:36:0,-28.0099,-329.335	0/0:176:176,0:176:6290:0:0:0,-52.9813,-566.193	0/0:155:154,0:154:5482:0:0:0,-46.3586,-493.269	0/0:109:109,0:109:3890:0:0:0,-32.8123,-350.294	0/1:89:52,37:52:1842:37:1332:-93.3907,0,-139.267	0/0:154:154,0:154:5519:0:0:0,-46.3586,-496.834	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:200:105,95:105:3736:95:3383:-244.478,0,-276.234	0/0:98:98,0:98:3482:0:0:0,-29.5009,-313.592	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:173:85,88:85:3021:88:3152:-231.825,0,-220.042	0/1:60:36,24:36:1275:24:860:-59.66,0,-96.9905	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.242	0/1:100:52,48:52:1833:48:1701:-123.27,0,-135.145	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:158:158,0:158:5590:0:0:0,-47.5627,-503.227	0/0:162:162,0:162:5745:0:0:0,-48.7669,-517.171	0/0:69:66,3:66:2335:3:108:0,-10.6959,-200.335	0/0:92:92,0:92:3280:0:0:0,-27.6948,-295.421	0/0:144:142,2:142:5043:2:72:0,-36.5116,-447.18	0/1:148:58,90:58:2061:90:3235:-246.818,0,-141.207	0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.744	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/1:43:21,22:21:732:22:763:-56.0424,0,-53.2544	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:136:136,0:136:4812:0:0:0,-40.9401,-433.239	0/0:101:101,0:101:3588:0:0:0,-30.404,-323.127	0/0:170:170,0:170:6068:0:0:0,-51.1751,-546.225	0/0:167:167,0:167:5934:0:0:0,-50.272,-534.173	0/1:111:72,39:72:2551:39:1387:-91.712,0,-196.427	0/1:66:36,30:36:1288:30:1071:-76.8336,0,-96.3556	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:90:90,0:90:3194:0:0:0,-27.0927,-287.684	0/0:126:125,0:125:4451:0:0:0,-37.6287,-400.403	0/0:189:189,0:189:6743:0:0:0,-56.8947,-606.947	0/0:63:63,0:63:2226:0:0:0,-18.9649,-200.601	0/1:83:43,40:43:1527:40:1432:-104.192,0,-112.728	0/1:56:30,26:30:1072:26:936:-67.7018,0,-79.9348	0/1:144:70,74:70:2495:74:2664:-196.657,0,-181.454	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:77:77,0:77:2707:0:0:0,-23.1793,-243.871	0/0:92:91,1:91:3251:1:36:0,-24.0965,-289.213	0/1:53:28,25:28:991:25:896:-65.0058,0,-73.5489	0/1:106:50,56:50:1768:56:1989:-147.374,0,-127.491	0/1:92:33,59:33:1165:59:2091:-160.762,0,-77.4602	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.671	0/0:127:124,2:124:4415:2:72:0,-31.3797,-390.72
chr03	5422673	.	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chr03	5504943	.	A	C	37998.9	PASS	AB=0.511697;ABP=8.19195;AC=30;AF=0.159574;AN=188;AO=2254;CIGAR=1X;DP=14781;DPB=14781;DPRA=1.02143;EPP=4897.51;EPPR=27031.5;GTI=1;LEN=1;MEANALT=1.11429;MQM=59.984;MQMR=59.9925;NS=94;NUMALT=1;ODDS=2.54168;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80466;QR=448589;RO=12515;RPL=2254;RPP=4897.51;RPPR=27031.5;RPR=0;RUN=1;SAF=0;SAP=4897.51;SAR=2254;SRF=0;SRP=27179;SRR=12515;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:98:51,47:51:1816:47:1661:-120.275,0,-134.22	0/1:260:136,124:136:4888:124:4416:-319.343,0,-361.802	0/1:225:107,118:107:3825:118:4217:-311.977,0,-276.714	0/0:238:238,0:238:8532:0:0:0,-71.6451,-767.877	0/0:197:197,0:197:7045:0:0:0,-59.3029,-634.111	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:146:145,0:145:5173:0:0:0,-43.6493,-465.39	0/1:326:167,159:167:5992:159:5670:-412.282,0,-441.248	0/0:172:171,0:171:6105:0:0:0,-51.4761,-549.191	0/0:211:211,0:211:7557:0:0:0,-63.5173,-680.167	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:48:21,27:21:740:27:957:-71.9944,0,-52.4739	0/1:62:29,33:29:1044:33:1184:-88.2041,0,-75.6109	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:51:51,0:51:1827:0:0:0,-15.3525,-164.71	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:18:6,12:6:207:12:428:-33.4403,0,-13.5484	0/0:315:315,0:315:11304:0:0:0,-94.8244,-1017.24	0/0:256:255,0:255:9131:0:0:0,-76.7626,-821.523	0/0:226:226,0:226:8100:0:0:0,-68.0328,-729.014	0/0:143:139,3:139:4992:3:108:0,-32.9185,-439.387	0/0:190:190,0:190:6771:0:0:0,-57.1957,-609.467	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.995	0/1:617:301,314:301:10812:314:11216:-823.829,0,-787.428	0/0:193:191,2:191:6856:2:72:0,-51.2621,-610.27	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:395:394,0:394:14116:0:0:0,-118.606,-1269.84	0/0:259:255,4:255:9118:4:140:0,-65.0222,-807.647	0/0:215:215,0:215:7708:0:0:0,-64.7214,-693.752	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:223:222,0:222:7976:0:0:0,-66.8287,-717.498	0/0:467:467,0:467:16764:0:0:0,-140.581,-1508.4	0/1:46:29,17:29:1040:17:612:-41.5661,0,-80.067	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:372:181,191:181:6484:191:6841:-503.774,0,-471.661	0/1:21:6,14:6:216:14:489:-38.0057,0,-13.4528	0/0:280:280,0:280:10044:0:0:0,-84.2884,-903.892	0/0:99:99,0:99:3541:0:0:0,-29.802,-318.897	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:170:170,0:170:6092:0:0:0,-51.1751,-548.381	0/0:254:254,0:254:9108:0:0:0,-76.4616,-819.692	0/0:402:402,0:402:14417:0:0:0,-121.014,-1297.27	0/0:213:213,0:213:7644:0:0:0,-64.1194,-687.994	0/1:270:143,126:143:5120:126:4493:-323.351,0,-379.754	0/0:262:262,0:262:9400:0:0:0,-78.8699,-845.959	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:369:190,179:190:6808:179:6386:-463.747,0,-501.711	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:237:129,108:129:4632:108:3872:-277.287,0,-345.697	0/1:95:25,70:25:896:70:2500:-196.655,0,-52.3625	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:179:179,0:179:6428:0:0:0,-53.8844,-578.605	0/1:117:61,56:61:2192:56:2016:-146.492,0,-162.325	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:482:482,0:482:17313:0:0:0,-145.096,-1557.79	0/0:455:455,0:455:16325:0:0:0,-136.969,-1468.91	0/0:140:129,11:129:4620:11:392:0,-6.52414,-380.343	0/0:162:162,0:162:5812:0:0:0,-48.7669,-523.192	0/0:305:304,0:304:10862:0:0:0,-91.5131,-977.034	0/1:139:42,97:42:1512:97:3461:-269.856,0,-94.5314	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:152:152,0:152:5444:0:0:0,-45.7566,-490.089	0/1:87:44,43:44:1584:43:1525:-111.351,0,-116.662	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/0:117:117,0:117:4192:0:0:0,-35.2205,-377.461	0/0:239:239,0:239:8538:0:0:0,-71.9462,-768.417	0/0:334:334,0:334:11972:0:0:0,-100.544,-1077.33	0/1:254:133,121:133:4752:121:4306:-311.254,0,-351.375	0/1:253:108,145:108:3872:145:5204:-392.337,0,-272.514	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:216:216,0:216:7760:0:0:0,-65.0225,-698.427	0/0:235:234,1:234:8392:1:36:0,-67.1438,-751.456	0/0:376:376,0:376:13484:0:0:0,-113.187,-1213.35	0/0:103:103,0:103:3681:0:0:0,-31.0061,-331.492	0/1:52:28,24:28:1004:24:856:-61.7075,0,-75.0223	0/1:97:49,48:49:1756:48:1697:-123.814,0,-129.124	0/1:154:76,78:76:2716:78:2793:-205.25,0,-198.325	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.36	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:45:24,21:24:856:21:737:-53.1043,0,-63.8148	0/1:67:26,41:26:932:41:1461:-111.615,0,-64.0299	0/0:246:245,1:245:8776:1:36:0,-70.4551,-786.23	0/0:81:80,0:80:2880:0:0:0,-24.0824,-259.076
chr03	5531169	.	T	A	32607.4	PASS	AB=0.554676;ABP=88.256;AC=31;AF=0.164894;AN=188;AO=1838;CIGAR=1X;DP=10641;DPB=10641;DPRA=1.02727;EPP=3890.63;EPPR=18770.3;GTI=0;LEN=1;MEANALT=1.10811;MQM=59.9619;MQMR=59.9947;NS=94;NUMALT=1;ODDS=2.51274;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65916;QR=315136;RO=8794;RPL=12;RPP=3890.63;RPPR=18770.3;RPR=1826;RUN=1;SAF=1838;SAP=3994.18;SAR=0;SRF=8794;SRP=19098.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:21,26:21:743:26:932:-70.0505,0,-53.0449	0/1:157:92,65:92:3285:65:2340:-163.597,0,-248.607	0/1:125:53,72:53:1895:72:2592:-195.899,0,-133.199	0/0:160:160,0:160:5708:0:0:0,-48.1648,-513.837	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.648	0/0:126:126,0:126:4506:0:0:0,-37.9298,-405.707	0/1:178:83,95:83:2984:95:3416:-254.07,0,-215.208	0/0:135:135,0:135:4839:0:0:0,-40.639,-435.663	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:89:88,0:88:3152:0:0:0,-26.4906,-283.545	0/1:87:36,51:36:1287:51:1824:-138.251,0,-89.9432	0/1:77:42,35:42:1493:35:1245:-89.1738,0,-111.483	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.013	0/0:81:79,1:79:2840:1:36:0,-20.844,-252.239	0/0:89:89,0:89:3187:0:0:0,-26.7917,-287.053	0/0:90:90,0:90:3227:0:0:0,-27.0927,-290.649	0/0:81:80,0:80:2867:0:0:0,-24.0824,-257.906	0/1:52:21,31:21:741:31:1111:-84.6476,0,-51.358	0/0:240:240,0:240:8583:0:0:0,-72.2472,-772.467	0/0:222:222,0:222:7959:0:0:0,-66.8287,-716.331	0/1:102:25,77:25:900:77:2741:-216.226,0,-50.616	0/0:151:151,0:151:5424:0:0:0,-45.4555,-488.287	0/0:142:142,0:142:5100:0:0:0,-42.7463,-459.141	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/1:252:109,143:109:3904:143:5121:-385.171,0,-275.694	0/0:297:297,0:297:10663:0:0:0,-89.4059,-959.528	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/0:152:152,0:152:5464:0:0:0,-45.7566,-491.885	0/0:207:202,5:202:7233:5:180:0,-45.7611,-634.469	0/0:200:200,0:200:7150:0:0:0,-60.206,-643.557	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	0/0:255:255,0:255:9154:0:0:0,-76.7626,-823.827	0/0:183:183,0:183:6563:0:0:0,-55.0885,-590.749	0/1:105:43,62:43:1548:62:2232:-169.535,0,-108.005	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:118:61,57:61:2196:57:2040:-148.35,0,-162.384	0/1:40:23,17:23:828:17:612:-43.3722,0,-62.8029	0/0:135:134,0:134:4800:0:0:0,-40.338,-431.796	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:72:72,0:72:2561:0:0:0,-21.6742,-230.653	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/0:167:167,0:167:6000:0:0:0,-50.272,-540.103	0/0:163:162,1:162:5808:1:36:0,-45.4696,-519.234	0/0:136:136,0:136:4892:0:0:0,-40.9401,-440.429	0/1:150:75,75:75:2684:75:2696:-197.729,0,-196.65	0/0:183:183,0:183:6512:0:0:0,-55.0885,-586.164	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:157:61,96:61:2192:96:3452:-263.626,0,-150.284	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:176:60,116:60:2160:116:4133:-319.171,0,-141.685	0/1:47:14,33:14:504:33:1176:-91.97,0,-31.5497	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:125:125,0:125:4458:0:0:0,-37.6287,-401.391	0/1:142:63,79:63:2268:79:2844:-213.451,0,-161.636	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:149:149,0:149:5340:0:0:0,-44.8535,-480.732	0/0:223:218,5:218:7802:5:176:0,-50.9447,-686.023	0/0:129:126,3:126:4509:3:108:0,-28.7577,-395.901	0/0:73:73,0:73:2589:0:0:0,-21.9752,-233.258	0/0:200:200,0:200:7175:0:0:0,-60.206,-645.803	0/1:135:39,96:39:1404:96:3424:-267.731,0,-86.0202	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:84:83,0:83:2979:0:0:0,-24.9855,-267.981	0/1:97:39,58:39:1404:58:2084:-158.629,0,-97.4594	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.817	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/0:267:267,0:267:9576:0:0:0,-80.375,-861.791	0/0:201:201,0:201:7203:0:0:0,-60.507,-648.323	0/1:105:55,50:55:1960:50:1792:-129.951,0,-145.067	0/1:136:70,66:70:2508:66:2376:-173.157,0,-185.032	0/1:18:6,11:6:216:11:396:-30.5054,0,-14.3132	0/0:154:154,0:154:5524:0:0:0,-46.3586,-497.284	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:171:169,2:169:6059:2:72:0,-44.6394,-538.574	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.692	0/1:80:34,45:34:1220:45:1616:-121.628,0,-86.0044	0/1:115:56,58:56:2008:58:2082:-152.943,0,-146.316	0/1:217:97,120:97:3476:120:4307:-322.481,0,-247.728	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:94:93,0:93:3344:0:0:0,-27.9958,-300.816	0/0:81:81,0:81:2916:0:0:0,-24.3834,-262.674	0/1:81:40,41:40:1440:41:1476:-108.753,0,-105.514	0/1:131:72,59:72:2576:59:2120:-151.634,0,-192.655	0/1:95:31,64:31:1116:64:2300:-178.663,0,-72.1538	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.451	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016
chr03	5531193	.	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chr03	5613415	.	C	G	37720.6	PASS	AB=0.482316;ABP=12.5336;AC=30;AF=0.159574;AN=188;AO=1706;CIGAR=1X;DP=9090;DPB=9090;DPRA=1.26264;EPP=3672.88;EPPR=16006.8;GTI=2;LEN=1;MEANALT=1;MQM=55.9783;MQMR=59.6298;NS=94;NUMALT=1;ODDS=0.30288;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60575;QR=261842;RO=7382;RPL=956;RPP=57.0247;RPPR=58.9285;RPR=750;RUN=1;SAF=960;SAP=61.3015;SAR=746;SRF=3912;SRP=60.4781;SRR=3470;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:11,15:11:387:15:531:-40.1807,0,-27.3392	0/1:121:58,63:58:2071:63:2260:-166.751,0,-149.281	0/1:165:94,71:94:3349:71:2518:-176.179,0,-251.88	0/0:103:103,0:103:3649:0:0:0,-31.0061,-327.957	0/0:42:41,1:41:1468:1:36:0,-9.04498,-128.809	0/0:60:60,0:60:2134:0:0:0,-18.0618,-192.314	0/0:112:112,0:112:3985:0:0:0,-33.7154,-358.834	0/1:145:82,63:82:2922:63:2255:-158.905,0,-219.304	0/0:86:86,0:86:3042:0:0:0,-25.8886,-273.954	0/0:86:86,0:86:3032:0:0:0,-25.8886,-273.101	0/0:167:167,0:167:5877:0:0:0,-50.272,-528.915	0/1:133:70,63:70:2485:63:2198:-157.618,0,-183.845	0/1:130:61,69:61:2168:69:2450:-181.161,0,-156.253	0/0:188:188,0:188:6686:0:0:0,-56.5936,-601.667	0/0:124:124,0:124:4357:0:0:0,-37.3277,-392.256	0/0:125:125,0:125:4427:0:0:0,-37.6287,-398.59	0/0:147:147,0:147:5233:0:0:0,-44.2514,-470.828	0/0:125:125,0:125:4411:0:0:0,-37.6287,-397.133	0/1:126:64,62:64:2272:62:2175:-157.608,0,-166.785	0/0:106:106,0:106:3795:0:0:0,-31.9092,-341.658	0/0:116:116,0:116:4089:0:0:0,-34.9195,-368.189	0/1:25:10,15:10:356:15:523:-39.794,0,-24.8546	0/0:34:34,0:34:1197:0:0:0,-10.235,-108.025	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.002	0/0:43:42,0:42:1504:0:0:0,-12.6433,-135.286	0/1:155:85,70:85:3003:70:2512:-179.407,0,-223.838	0/0:144:144,0:144:5147:0:0:0,-43.3483,-463.304	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.005	0/0:104:103,1:103:3656:1:36:0,-27.7098,-325.642	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.545	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.563	0/1:10:8,2:8:288:2:72:-3.82158,0,-23.2501	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.455	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1653	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/0:277:277,0:277:9807:0:0:0,-83.3853,-882.477	0/0:74:74,0:74:2642:0:0:0,-22.2762,-237.994	0/1:156:72,84:72:2570:84:2955:-218.275,0,-184.565	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/1:92:62,30:62:2181:30:1072:-68.7716,0,-168.85	0/1:81:38,43:38:1351:43:1535:-113.952,0,-97.4923	0/0:82:82,0:82:2917:0:0:0,-24.6845,-262.734	0/0:118:118,0:118:4188:0:0:0,-35.5215,-377.086	0/0:94:94,0:94:3285:0:0:0,-28.2968,-295.862	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.468	0/0:137:137,0:137:4888:0:0:0,-41.2411,-439.55	0/0:133:133,0:133:4693:0:0:0,-40.037,-421.938	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.373	0/1:194:135,59:135:4744:59:2104:-130.896,0,-368.715	0/0:90:89,1:89:3181:1:36:0,-23.7051,-282.949	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:116:67,49:67:2369:49:1739:-121.195,0,-178.529	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3332	0/1:89:53,36:53:1879:36:1284:-88.508,0,-142.592	0/1:32:23,9:23:824:9:312:-18.772,0,-64.8457	0/1:8:1,7:1:36:7:243:-19.7945,0,-1.19003	0/0:10:10,0:10:342:0:0:0,-3.0103,-31.109	0/0:73:72,1:72:2544:1:36:0,-18.3769,-225.496	0/1:211:97,114:97:3401:114:4025:-298.432,0,-242.769	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2985	0/0:82:81,1:81:2860:1:36:0,-21.0862,-254.039	0/0:139:139,0:139:4944:0:0:0,-41.8432,-445.108	0/0:89:84,5:84:2992:5:180:0,-10.2443,-252.961	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.238	0/0:103:101,2:101:3585:2:72:0,-24.1694,-316.004	0/1:72:16,56:16:576:56:2002:-158.561,0,-30.5008	0/0:76:74,2:74:2590:2:72:0,-16.0513,-226.501	0/0:87:87,0:87:3101:0:0:0,-26.1896,-279.284	0/1:201:101,100:101:3582:100:3560:-259.905,0,-262.078	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6826	0/0:87:87,0:87:3104:0:0:0,-26.1896,-279.54	0/0:97:97,0:97:3425:0:0:0,-29.1999,-308.423	0/0:143:143,0:143:5092:0:0:0,-43.0473,-458.382	0/0:106:106,0:106:3779:0:0:0,-31.9092,-340.274	0/1:126:71,55:71:2532:55:1958:-138.019,0,-190.126	0/1:128:62,66:62:2183:66:2363:-173.799,0,-158.196	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.9737	0/0:109:109,0:109:3887:0:0:0,-32.8123,-350	0/0:90:90,0:90:3195:0:0:0,-27.0927,-287.71	0/0:129:128,1:128:4549:1:36:0,-35.3784,-406.03	0/0:143:143,0:143:5078:0:0:0,-43.0473,-457.149	0/1:134:71,63:71:2531:63:2244:-161.54,0,-187.679	0/1:140:74,66:74:2621:66:2372:-171.36,0,-193.961	0/1:203:99,104:99:3486:104:3681:-270.261,0,-252.313	0/0:77:77,0:77:2724:0:0:0,-23.1793,-245.245	0/0:104:104,0:104:3654:0:0:0,-31.3071,-328.969	0/0:101:100,0:100:3529:0:0:0,-30.103,-317.118	0/1:146:66,80:66:2351:80:2807:-207.953,0,-167.881	0/1:248:130,118:130:4611:118:4182:-300.843,0,-340.331	0/1:90:32,58:32:1148:58:2067:-158.977,0,-76.5348	0/0:45:45,0:45:1585:0:0:0,-13.5463,-142.936	0/0:171:171,0:171:6040:0:0:0,-51.4761,-543.465
chr03	5613420	.	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chr03	6043093	.	C	A	89869.6	PASS	AB=0.461768;ABP=28.5806;AC=157;AF=0.835106;AN=188;AO=4224;CIGAR=1X;DP=5314;DPB=5314;DPRA=0;EPP=9175.31;EPPR=2313.74;GTI=3;LEN=1;MEANALT=1.02128;MQM=46.9626;MQMR=54.3814;NS=94;NUMALT=1;ODDS=0.199016;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151514;QR=38826;RO=1088;RPL=0;RPP=9175.31;RPPR=2313.74;RPR=4224;RUN=1;SAF=4224;SAP=9175.31;SAR=0;SRF=1088;SRP=2365.57;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:13,32:13:468:32:1140:-88.5296,0,-28.7919	0/1:37:22,15:22:788:15:536:-36.8695,0,-60.0848	0/1:98:53,45:53:1904:45:1616:-113.138,0,-142.082	1/1:95:1,94:1:32:94:3376:-297.57,-25.4013,0	1/1:50:0,50:0:0:50:1796:-159.692,-15.0515,0	1/1:32:1,31:1:32:31:1116:-96.3998,-6.43405,0	1/1:23:0,23:0:0:23:824:-73.8542,-6.92369,0	0/1:84:26,58:26:936:58:2068:-159.159,0,-58.9295	1/1:66:0,66:0:0:66:2353:-209.94,-19.868,0	1/1:55:0,55:0:0:55:1957:-174.36,-16.5567,0	1/1:37:0,37:0:0:37:1328:-116.618,-11.1381,0	0/1:90:44,46:44:1572:46:1652:-120.881,0,-113.761	0/1:68:36,32:36:1283:32:1152:-82.6115,0,-95.2552	1/1:41:0,41:0:0:41:1472:-131.479,-12.3422,0	1/1:55:0,55:0:0:55:1972:-175.792,-16.5567,0	1/1:40:0,40:0:0:40:1440:-128.124,-12.0412,0	1/1:22:0,22:0:0:22:792:-70.876,-6.62266,0	1/1:27:1,26:1:36:26:936:-80.1625,-4.53054,0	1/1:26:0,26:0:0:26:936:-84.0604,-7.82678,0	1/1:90:0,90:0:0:90:3225:-286.057,-27.0927,0	1/1:69:0,69:0:0:69:2465:-220.102,-20.7711,0	0/1:128:94,34:94:3348:34:1219:-69.3465,0,-261.271	1/1:61:0,61:0:0:61:2192:-194.829,-18.3628,0	1/1:28:0,28:0:0:28:1008:-88.2343,-8.42884,0	1/1:55:0,55:0:0:55:1976:-175.997,-16.5567,0	0/1:182:110,72:110:3935:72:2592:-175.782,0,-298.472	1/1:127:0,127:0:0:127:4549:-404.827,-38.2308,0	1/1:34:0,34:0:0:34:1220:-109.051,-10.235,0	1/1:100:0,100:0:0:100:3562:-316.504,-30.103,0	1/1:42:1,41:1:36:41:1476:-127.742,-9.04599,0	1/1:27:0,27:0:0:27:972:-86.7966,-8.12781,0	0/1:15:6,9:6:216:9:324:-24.4885,0,-15.2695	1/1:6:0,6:0:0:6:216:-19.3539,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0205,-0.90309,0	1/1:7:0,7:0:0:7:252:-22.9041,-2.10721,0	0/1:18:5,13:5:180:13:468:-36.8109,0,-11.1289	1/1:167:0,167:0:0:167:6008:-530.839,-50.272,0	1/1:96:0,96:0:0:96:3436:-305.471,-28.8989,0	0/1:41:19,22:19:663:22:788:-58.4,0,-47.6336	1/1:4:0,4:0:0:4:144:-13.2217,-1.20412,0	0/1:53:29,24:29:1044:24:860:-61.2415,0,-78.1196	0/1:34:17,17:17:608:17:608:-44.1533,0,-44.8021	1/1:109:0,109:0:0:109:3912:-347.613,-32.8123,0	1/1:29:0,29:0:0:29:1040:-93.003,-8.72987,0	1/1:37:0,37:0:0:37:1327:-116.588,-11.1381,0	0/1:101:52,49:52:1860:49:1764:-125.997,0,-136.409	1/1:86:0,86:0:0:86:3084:-274.476,-25.8886,0	1/1:89:0,89:0:0:89:3204:-282.367,-26.7917,0	1/1:68:0,68:0:0:68:2448:-218.308,-20.47,0	0/1:61:30,30:30:1072:30:1080:-78.256,0,-77.5752	1/1:54:0,54:0:0:54:1938:-171.715,-16.2556,0	1/1:12:0,12:0:0:12:432:-38.5338,-3.61236,0	0/1:73:35,38:35:1241:38:1353:-99.445,0,-89.9069	1/1:29:0,29:0:0:29:1040:-92.2224,-8.72987,0	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	0/1:85:42,43:42:1508:43:1529:-111.09,0,-110.252	0/1:26:10,16:10:348:16:576:-43.5484,0,-23.7772	0/1:10:3,7:3:108:7:252:-19.8461,0,-7.03954	1/1:12:0,12:0:0:12:432:-38.8783,-3.61236,0	1/1:68:0,68:0:0:68:2425:-215.854,-20.47,0	0/1:88:51,37:51:1824:37:1332:-89.9673,0,-137.529	1/1:3:0,3:0:0:3:108:-9.98707,-0.90309,0	1/1:99:0,99:0:0:99:3564:-317.846,-29.802,0	1/1:58:0,58:0:0:58:2080:-184.796,-17.4597,0	1/1:46:0,46:0:0:46:1648:-146.998,-13.8474,0	1/1:46:0,46:0:0:46:1641:-145.847,-13.8474,0	1/1:78:0,78:0:0:78:2804:-248.542,-23.4803,0	0/1:116:87,29:87:3106:29:1025:-56.1761,0,-244.026	1/1:23:0,23:0:0:23:828:-73.7355,-6.92369,0	1/1:28:0,28:0:0:28:993:-89.2068,-8.42884,0	0/1:44:26,18:26:932:18:648:-44.207,0,-70.7458	1/1:18:0,18:0:0:18:629:-56.1654,-5.41854,0	1/1:73:0,73:0:0:73:2620:-234.047,-21.9752,0	1/1:31:0,31:0:0:31:1101:-98.8101,-9.33193,0	1/1:61:0,60:0:0:60:2152:-191.079,-18.0618,0	1/1:97:0,97:0:0:97:3475:-307.274,-29.1999,0	0/1:59:26,33:26:928:33:1188:-88.2896,0,-66.0529	0/1:64:38,26:38:1360:26:932:-63.8447,0,-102.771	0/1:22:14,8:14:495:8:288:-19.4634,0,-38.1793	1/1:86:0,86:0:0:86:3092:-274.923,-25.8886,0	1/1:15:0,15:0:0:15:540:-48.679,-4.51545,0	1/1:127:1,126:1:32:126:4528:-400.026,-35.0319,0	1/1:52:0,52:0:0:52:1868:-165.843,-15.6536,0	0/1:55:25,30:25:887:30:1080:-79.7323,0,-62.8696	0/1:38:19,19:19:684:19:680:-49.5552,0,-50.3395	0/1:114:56,58:56:1992:58:2088:-151.945,0,-143.474	1/1:18:0,18:0:0:18:648:-58.3554,-5.41854,0	1/1:80:0,80:0:0:80:2872:-254.65,-24.0824,0	1/1:51:0,51:0:0:51:1836:-163.512,-15.3525,0	0/1:25:11,14:11:396:14:504:-37.5648,0,-28.4396	0/1:81:43,38:43:1513:38:1364:-97.0462,0,-111.896	0/1:59:41,18:41:1459:18:648:-39.72,0,-113.463	1/1:53:0,53:0:0:53:1908:-168.651,-15.9546,0	1/1:77:0,77:0:0:77:2764:-245.652,-23.1793,0
chr03	6266640	.	AGAG	CGAA,AGAA	195017	PASS	AB=0.496371,0.501901;ABP=3.34131,3.10112;AC=157,31;AF=0.835106,0.164894;AN=188;AO=7738,1472;CIGAR=1X2M1X,3M1X;DP=9219;DPB=9221.75;DPRA=0,1.26443;EPP=16805.9,3199.42;EPPR=0;GTI=0;LEN=4,1;MEANALT=1.54255,2.14286;MQM=56.2128,59.6359;MQMR=0;NS=94;NUMALT=2;ODDS=6.30884;PAIRED=0,0;PAIREDR=0;PAO=11,0;PQA=380,0;PQR=0;PRO=0;QA=267906,52291;QR=0;RO=0;RPL=7738,1472;RPP=16805.9,3199.42;RPPR=0;RPR=0,0;RUN=1,1;SAF=7738,1472;SAP=16805.9,3199.42;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:34:0,18,16:0:0:18,16:630,572:-98.231,-46.9937,-41.5751,-51.5911,0,-46.7746	1/2:175:0,105,69:0:0:105,69:3679,2419:-495.877,-196.756,-165.148,-299.111,0,-278.34	1/2:94:0,47,47:0:0:47,47:1657,1637:-268.174,-133.431,-119.282,-135.094,0,-120.945	1/1:180:0,178,2:0:0:178,2:6110,68:-549.031,-53.5833,0,-543.516,-47.7277,-542.914	1/1:84:0,84,0:0:0:84,0:2917,0:-262.596,-25.2865,0,-262.596,-25.2865,-262.596	1/1:78:0,78,0:0:0:78,0:2699,0:-242.884,-23.4803,0,-242.884,-23.4803,-242.884	1/1:110:0,110,0:0:0:110,0:3807,0:-342.283,-33.1133,0,-342.283,-33.1133,-342.283	1/2:181:0,77,104:0:0:77,104:2701,3683:-520.095,-300.351,-277.171,-220.096,0,-188.789	1/1:48:0,48,0:0:0:48,0:1686,0:-151.857,-14.4494,0,-151.857,-14.4494,-151.857	1/1:77:0,77,0:0:0:77,0:2701,0:-241.71,-23.1793,0,-241.71,-23.1793,-241.71	1/1:133:0,133,0:0:0:133,0:4561,0:-409.946,-40.037,0,-409.946,-40.037,-409.946	1/2:64:0,28,36:0:0:28,36:972,1288:-184.297,-105.383,-96.9544,-79.2654,0,-68.4283	1/2:67:0,35,31:0:0:35,31:1187,1075:-183.443,-87.3545,-76.8184,-96.072,0,-86.7401	1/1:85:0,85,0:0:0:85,0:2927,0:-263.15,-25.5876,0,-263.15,-25.5876,-263.15	1/1:63:0,63,0:0:0:63,0:2154,0:-193.521,-18.9649,0,-193.521,-18.9649,-193.521	1/1:74:0,74,0:0:0:74,0:2581,0:-232.297,-22.2762,0,-232.297,-22.2762,-232.297	1/1:76:0,75,1:0:0:75,1:2551,36:-229.265,-22.5773,0,-226.328,-19.28,-226.027	1/1:59:0,59,0:0:0:59,0:2047,0:-184.252,-17.7608,0,-184.252,-17.7608,-184.252	1/1:65:0,65,0:0:0:65,0:2274,0:-204.668,-19.567,0,-204.668,-19.567,-204.668	1/1:202:0,202,0:0:0:202,0:6910,0:-621.121,-60.8081,0,-621.121,-60.8081,-621.121	1/1:147:0,145,2:0:0:145,2:5008,72:-449.721,-43.6494,0,-443.846,-37.4147,-443.244	1/2:105:0,39,66:0:0:39,66:1347,2330:-299.397,-190.087,-178.347,-109.658,0,-89.7898	1/1:20:0,20,0:0:0:20,0:672,0:-60.0115,-6.0206,0,-60.0115,-6.0206,-60.0115	1/1:93:0,93,0:0:0:93,0:3237,0:-291.424,-27.9958,0,-291.424,-27.9958,-291.424	1/1:91:0,90,0:0:0:90,0:3066,0:-273.283,-27.0927,0,-273.283,-27.0927,-273.283	1/2:220:0,125,95:0:0:125,95:4251,3404:-621.892,-277.975,-240.347,-344.266,0,-315.668	1/1:255:0,255,0:0:0:255,0:8777,0:-788.21,-76.7627,0,-788.21,-76.7627,-788.21	1/1:38:0,38,0:0:0:38,0:1318,0:-118.833,-11.4391,0,-118.833,-11.4391,-118.833	1/1:396:0,393,2:0:0:393,2:13641,72:-1225.37,-118.305,0,-1219.5,-112.402,-1218.9	1/1:118:0,115,3:0:0:115,3:3967,108:-356.519,-34.6185,0,-347.711,-25.8109,-346.808	1/1:91:0,91,0:0:0:91,0:3159,0:-284.166,-27.3937,0,-284.166,-27.3937,-284.166	1/2:16:0,5,11:0:0:5,11:156,392:-44.4996,-31.9839,-30.4788,-12.521,0,-9.20972	1/1:37:0,37,0:0:0:37,0:1262,0:-113.82,-11.1381,0,-113.82,-11.1381,-113.82	1/1:12:0,12,0:0:0:12,0:407,0:-36.9474,-3.61236,0,-36.9474,-3.61236,-36.9474	1/1:14:0,14,0:0:0:14,0:497,0:-44.6943,-4.21442,0,-44.6943,-4.21442,-44.6943	1/2:17:0,13,4:0:0:13,4:449,144:-48.5689,-12.1095,-8.19611,-36.8157,0,-35.6116	1/1:245:0,245,0:0:0:245,0:8454,0:-759.864,-73.7524,0,-759.864,-73.7524,-759.864	1/1:212:0,211,1:0:0:211,1:7269,36:-652.934,-63.5173,0,-649.996,-60.2201,-649.695	1/2:122:0,66,55:0:0:66,55:2335,1976:-351.027,-161.165,-141.297,-189.86,0,-173.304	1/1:5:0,5,0:0:0:5,0:178,0:-16.3615,-1.50515,0,-16.3615,-1.50515,-16.3615	1/2:113:0,59,54:0:0:59,54:2035,1933:-323.015,-157.974,-140.214,-165.392,0,-149.136	1/2:68:0,35,33:0:0:35,33:1226,1179:-196.048,-96.4832,-85.9472,-99.9183,0,-89.9843	1/1:93:0,93,0:0:0:93,0:3190,0:-287.072,-27.9958,0,-287.072,-27.9958,-287.072	1/1:78:0,77,0:0:0:77,0:2624,0:-235.741,-23.1793,0,-235.741,-23.1793,-235.741	1/1:72:0,72,0:0:0:72,0:2458,0:-220.953,-21.6742,0,-220.953,-21.6742,-220.953	1/2:57:0,23,34:0:0:23,34:770,1208:-160.837,-98.7902,-91.8665,-62.389,0,-52.154	1/1:151:0,151,0:0:0:151,0:5235,0:-470.857,-45.4555,0,-470.857,-45.4555,-470.857	1/1:146:0,146,0:0:0:146,0:5085,0:-456.772,-43.9504,0,-456.772,-43.9504,-456.772	1/1:112:0,112,0:0:0:112,0:3914,0:-351.887,-33.7154,0,-351.887,-33.7154,-351.887	1/2:176:0,93,83:0:0:93,83:3283,2976:-510.14,-243.084,-215.089,-267.411,0,-242.426	1/1:185:0,183,2:0:0:183,2:6381,72:-572.878,-55.0885,0,-567.004,-48.8538,-566.401	1/1:24:0,24,0:0:0:24,0:829,0:-74.7245,-7.22472,0,-74.7245,-7.22472,-74.7245	1/2:140:0,59,81:0:0:59,81:2014,2861:-396.281,-233.325,-215.564,-163.302,0,-138.919	1/1:24:0,24,0:0:0:24,0:803,0:-72.3943,-7.22472,0,-72.3943,-7.22472,-72.3943	1/1:22:0,22,0:0:0:22,0:757,0:-68.4325,-6.62266,0,-68.4325,-6.62266,-68.4325	1/2:126:0,66,60:0:0:66,60:2306,2144:-362.546,-175.138,-155.27,-187.761,0,-169.699	1/2:30:0,18,12:0:0:18,12:626,428:-86.0641,-35.2049,-29.7863,-5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chr03	6266704	.	C	T	177166	PASS	AB=0.470248;ABP=26.9147;AC=156;AF=0.829787;AN=188;AO=8119;CIGAR=1X;DP=9784;DPB=9784;DPRA=52.5914;EPP=17624.5;EPPR=3601.16;GTI=1;LEN=1;MEANALT=1;MQM=53.956;MQMR=54.7736;NS=94;NUMALT=1;ODDS=3.33919;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=290501;QR=59486;RO=1665;RPL=8118;RPP=17624.5;RPPR=3601.16;RPR=1;RUN=1;SAF=0;SAP=17633.2;SAR=8119;SRF=0;SRP=3618.51;SRR=1665;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:38,23:38:1356:23:828:-55.6277,0,-103.398	0/1:91:44,47:44:1584:47:1688:-124.309,0,-114.562	0/1:159:95,64:95:3385:64:2292:-157.582,0,-255.804	1/1:210:0,210:0:0:210:7478:-671.276,-63.2163,0	1/1:113:2,111:2:72:111:3961:-346.266,-27.1867,0	1/1:95:0,95:0:0:95:3412:-305.66,-28.5979,0	1/1:194:0,194:0:0:194:6941:-623.532,-58.3998,0	0/1:64:33,31:33:1180:31:1116:-80.8851,0,-86.8791	1/1:109:0,109:0:0:109:3886:-347.329,-32.8123,0	1/1:92:0,92:0:0:92:3289:-295.008,-27.6948,0	1/1:87:0,87:0:0:87:3113:-279.396,-26.1896,0	0/1:107:53,54:53:1908:54:1936:-141.657,0,-138.232	0/1:98:58,40:58:2076:40:1428:-98.099,0,-156.791	1/1:83:0,83:0:0:83:2976:-267.098,-24.9855,0	1/1:75:0,75:0:0:75:2696:-242.094,-22.5773,0	1/1:60:0,60:0:0:60:2148:-193.173,-18.0618,0	1/1:81:0,81:0:0:81:2904:-259.887,-24.3834,0	1/1:71:1,70:1:36:70:2509:-220.745,-17.7749,0	1/1:97:0,97:0:0:97:3480:-311.262,-29.1999,0	1/1:169:1,168:1:36:168:5973:-532.592,-47.2775,0	1/1:128:0,128:0:0:128:4566:-409.373,-38.5318,0	0/1:173:117,56:117:4166:56:2012:-129.147,0,-322.787	1/1:122:0,122:0:0:122:4376:-392.798,-36.7257,0	1/1:129:0,129:0:0:129:4609:-413.35,-38.8329,0	1/1:99:1,98:1:36:98:3502:-310.097,-26.2074,0	0/1:296:149,147:149:5336:147:5236:-381.627,0,-390.755	1/1:242:0,242:0:0:242:8672:-777.875,-72.8493,0	1/1:49:0,49:0:0:49:1727:-155.258,-14.7505,0	1/1:270:1,269:1:36:269:9604:-857.965,-77.6803,0	1/1:118:4,114:4:144:114:4066:-351.285,-22.2216,0	1/1:118:0,118:0:0:118:4225:-378.914,-35.5215,0	0/1:3:1,2:1:36:2:72:-5.92394,0,-2.48451	1/1:16:0,16:0:0:16:572:-51.7422,-4.81648,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	1/1:12:0,12:0:0:12:432:-38.8072,-3.61236,0	0/1:16:5,11:5:180:11:396:-31.048,0,-11.7041	1/1:291:0,291:0:0:291:10456:-939.701,-87.5997,0	1/1:131:0,131:0:0:131:4704:-420.745,-39.4349,0	0/1:98:45,53:45:1608:53:1904:-140.965,0,-114.746	1/1:5:0,5:0:0:5:180:-16.5286,-1.50515,0	0/1:135:63,72:63:2264:72:2554:-188.751,0,-161.956	0/1:65:35,30:35:1245:30:1080:-77.6756,0,-92.5426	1/1:126:0,126:0:0:126:4516:-405.403,-37.9298,0	1/1:109:0,109:0:0:109:3900:-350.222,-32.8123,0	1/1:85:0,85:0:0:85:3056:-274.271,-25.5876,0	0/1:152:78,74:78:2781:74:2648:-192.698,0,-204.504	1/1:113:0,113:0:0:113:4048:-362.738,-34.0164,0	1/1:83:0,83:0:0:83:2968:-266.541,-24.9855,0	1/1:156:0,156:0:0:156:5539:-497.418,-46.9607,0	0/1:94:46,48:46:1656:48:1710:-125.203,0,-120.537	1/1:227:0,227:0:0:227:8107:-728.44,-68.3338,0	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	0/1:138:69,69:69:2457:69:2476:-180.596,0,-178.989	1/1:56:1,55:1:36:55:1964:-173.274,-13.2599,0	1/1:37:0,37:0:0:37:1330:-119.485,-11.1381,0	0/1:170:98,72:98:3482:72:2572:-179.891,0,-261.845	0/1:64:30,34:30:1072:34:1220:-90.6778,0,-77.3721	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83588	1/1:12:0,12:0:0:12:432:-39.0676,-3.61236,0	1/1:73:0,73:0:0:73:2620:-234.68,-21.9752,0	0/1:154:84,70:84:3016:70:2509:-178.97,0,-224.765	1/1:8:0,8:0:0:8:284:-25.8835,-2.40824,0	1/1:205:0,205:0:0:205:7338:-659.057,-61.7112,0	1/1:164:0,164:0:0:164:5833:-523.755,-49.3689,0	1/1:33:0,33:0:0:33:1184:-106.469,-9.93399,0	1/1:68:0,68:0:0:68:2421:-217.416,-20.47,0	1/1:167:0,167:0:0:167:5966:-535.314,-50.272,0	0/1:24:18,6:18:640:6:216:-12.5515,0,-50.6327	1/1:46:2,44:2:72:44:1584:-135.419,-7.0177,0	1/1:58:0,58:0:0:58:2072:-185.649,-17.4597,0	0/1:73:35,38:35:1248:38:1368:-101.332,0,-89.4236	1/1:21:0,21:0:0:21:756:-68.1853,-6.32163,0	1/1:122:0,122:0:0:122:4364:-391.074,-36.7257,0	1/1:23:0,23:0:0:23:828:-74.4849,-6.92369,0	1/1:219:1,218:1:36:218:7755:-690.213,-62.331,0	1/1:143:0,143:0:0:143:5128:-460.819,-43.0473,0	0/1:97:52,45:52:1852:45:1612:-115.008,0,-136.899	0/1:81:40,41:40:1436:41:1451:-105.837,0,-103.881	0/1:14:8,6:8:284:6:216:-15.5058,0,-21.6135	1/1:82:0,82:0:0:82:2948:-263.997,-24.6845,0	1/1:42:0,42:0:0:42:1512:-135.679,-12.6433,0	1/1:276:0,276:0:0:276:9879:-886.84,-83.0843,0	1/1:134:0,134:0:0:134:4816:-432.998,-40.338,0	0/1:86:49,37:49:1760:37:1332:-93.9778,0,-132.481	0/1:105:52,53:52:1826:53:1896:-138.243,0,-132.73	0/1:223:111,112:111:3967:112:4023:-294.397,0,-289.204	1/1:67:1,66:1:36:66:2376:-209.1,-16.7814,0	1/1:111:0,111:0:0:111:3988:-357.235,-33.4143,0	1/1:81:0,81:0:0:81:2898:-259.907,-24.3834,0	0/1:62:27,35:27:968:35:1260:-94.8626,0,-68.3903	0/1:132:65,67:65:2313:67:2397:-175.799,0,-168.22	0/1:74:49,25:49:1756:25:900:-58.8572,0,-135.887	1/1:87:0,87:0:0:87:3109:-279.385,-26.1896,0	1/1:167:1,166:1:36:166:5961:-531.796,-46.6754,0
chr03	7080783	.	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chr03	7203791	.	G	A	25814.4	PASS	AB=0.559519;ABP=87.5365;AC=32;AF=0.170213;AN=188;AO=1547;CIGAR=1X;DP=7743;DPB=7743;DPRA=1.26457;EPP=3362.28;EPPR=13457.5;GTI=2;LEN=1;MEANALT=1;MQM=48.4195;MQMR=48.4695;NS=94;NUMALT=1;ODDS=0.988463;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54756;QR=215603;RO=6196;RPL=1;RPP=3353.6;RPPR=13457.5;RPR=1546;RUN=1;SAF=1;SAP=3353.6;SAR=1546;SRF=0;SRP=13457.5;SRR=6196;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:8,8:8:276:8:284:-20.8187,0,-20.1333	0/1:114:61,53:61:2124:53:1895:-133.816,0,-154.463	0/1:167:84,83:84:2905:83:2937:-209.047,0,-208.453	0/0:199:199,0:199:6942:0:0:0,-59.905,-618.623	0/0:60:60,0:60:2076:0:0:0,-18.0618,-185.925	0/0:46:46,0:46:1568:0:0:0,-13.8474,-139.201	0/0:112:112,0:112:3925:0:0:0,-33.7154,-351.525	0/1:129:59,70:59:2096:70:2487:-182.082,0,-147.399	0/0:51:51,0:51:1734:0:0:0,-15.3525,-154.571	0/0:83:83,0:83:2854:0:0:0,-24.9855,-255.415	0/0:41:41,0:41:1365:0:0:0,-12.3422,-122.444	0/1:46:16,30:16:568:30:1063:-80.6303,0,-36.6777	0/1:42:24,18:24:840:18:640:-44.6894,0,-62.569	0/0:37:37,0:37:1303:0:0:0,-11.1381,-115.93	0/0:35:35,0:35:1208:0:0:0,-10.536,-108.622	0/0:31:31,0:31:1068:0:0:0,-9.33193,-95.0009	0/0:34:34,0:34:1182:0:0:0,-10.235,-104.872	0/0:30:30,0:30:1048:0:0:0,-9.0309,-93.7635	0/0:29:29,0:29:995:0:0:0,-8.72987,-88.0539	0/0:223:223,0:223:7820:0:0:0,-67.1297,-697.859	0/0:97:97,0:97:3308:0:0:0,-29.1999,-294.348	0/1:152:57,95:57:1974:95:3352:-254.827,0,-131.056	0/0:64:64,0:64:2244:0:0:0,-19.2659,-200.518	0/0:88:88,0:88:3072:0:0:0,-26.4906,-272.614	0/0:64:64,0:64:2233:0:0:0,-19.2659,-199.506	0/1:286:149,137:149:5264:137:4828:-347.044,0,-386.059	0/0:117:116,1:116:4031:1:36:0,-31.6222,-355.776	0/0:18:18,0:18:628:0:0:0,-5.41854,-56.0684	0/1:290:130,160:130:4522:160:5647:-417.234,0,-317.359	0/0:105:104,1:104:3589:1:36:0,-28.0347,-317.373	0/0:118:117,1:117:4080:1:36:0,-31.9385,-360.871	0/1:10:6,4:6:192:4:135:-9.40031,0,-14.4748	0/0:20:20,0:20:712:0:0:0,-6.0206,-63.4676	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.60148	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.7843	0/1:22:7,15:7:239:15:536:-40.0362,0,-15.0191	0/0:123:123,0:123:4178:0:0:0,-37.0267,-374.952	0/0:189:188,1:188:6588:1:36:0,-53.3212,-584.426	0/1:42:22,20:22:746:20:720:-51.8028,0,-54.2008	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.76585	0/1:137:65,72:65:2287:72:2546:-185.319,0,-162.203	0/1:35:13,22:13:451:22:779:-58.2021,0,-30.155	0/0:122:122,0:122:4323:0:0:0,-36.7257,-386.005	0/0:40:40,0:40:1355:0:0:0,-12.0412,-121.801	0/0:53:53,0:53:1805:0:0:0,-15.9546,-161.41	0/1:61:30,31:30:1060:31:1093:-79.924,0,-77.0675	0/0:93:92,1:92:3215:1:36:0,-24.4372,-282.799	0/0:221:221,0:221:7705:0:0:0,-66.5276,-688.563	0/0:102:102,0:102:3561:0:0:0,-30.7051,-317.884	0/1:133:59,74:59:2037:74:2651:-197.253,0,-142.26	0/0:165:165,0:165:5754:0:0:0,-49.6699,-515.663	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.698	0/1:118:43,75:43:1497:75:2663:-201.386,0,-98.1218	0/0:34:34,0:34:1201:0:0:0,-10.235,-107.129	0/0:11:11,0:11:374:0:0:0,-3.31133,-33.2783	0/1:97:42,55:42:1473:55:1958:-146.076,0,-101.179	0/1:37:18,19:18:609:19:659:-48.0628,0,-43.7915	0/1:9:3,6:3:108:6:216:-17.0315,0,-7.34057	0/0:20:20,0:20:697:0:0:0,-6.0206,-61.9035	0/0:112:112,0:112:3929:0:0:0,-33.7154,-351.211	0/1:88:49,39:49:1711:39:1372:-96.6352,0,-127.206	0/0:13:13,0:13:453:0:0:0,-3.91339,-40.9334	0/0:194:194,0:194:6803:0:0:0,-58.3998,-610.051	0/0:172:171,1:171:5950:1:36:0,-48.1941,-528.136	0/0:65:64,1:64:2249:1:36:0,-15.9935,-196.082	0/0:88:88,0:88:3057:0:0:0,-26.4906,-271.647	0/0:146:146,0:146:5090:0:0:0,-43.9504,-455.616	0/1:160:35,125:35:1226:125:4448:-348.75,0,-62.0444	0/0:7:7,0:7:230:0:0:0,-2.10721,-20.9153	0/0:69:69,0:69:2391:0:0:0,-20.7711,-212.927	0/1:51:24,27:24:811:27:954:-70.4653,0,-57.5995	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.3787	0/0:52:52,0:52:1834:0:0:0,-15.6536,-163.044	0/0:54:54,0:54:1889:0:0:0,-16.2556,-167.603	0/0:99:99,0:99:3414:0:0:0,-29.802,-303.973	0/0:163:163,0:163:5704:0:0:0,-49.0679,-509.715	0/1:120:58,62:58:2046:62:2182:-157.32,0,-145.044	0/1:67:28,39:28:995:39:1396:-103.634,0,-68.7889	0/1:15:4,11:4:136:11:387:-30.2852,0,-7.95665	0/0:115:115,0:115:4016:0:0:0,-34.6184,-357.765	0/0:98:98,0:98:3432:0:0:0,-29.5009,-305.526	0/0:217:217,0:217:7555:0:0:0,-65.3235,-675.27	0/0:81:81,0:81:2797:0:0:0,-24.3834,-250.843	0/1:31:16,15:16:547:15:532:-38.6906,0,-39.8403	0/1:52:25,27:25:863:27:925:-67.1443,0,-61.9563	0/1:94:36,58:36:1214:58:2021:-153.118,0,-80.3648	0/0:23:23,0:23:763:0:0:0,-6.92369,-67.226	0/0:56:56,0:56:1931:0:0:0,-16.8577,-171.976	0/0:54:54,0:54:1853:0:0:0,-16.2556,-164.438	0/1:24:7,17:7:235:17:608:-47.2813,0,-13.5407	0/1:51:21,30:21:705:30:1080:-81.1608,0,-47.5176	0/1:51:11,40:11:368:40:1408:-111.128,0,-16.5519	0/0:139:136,3:136:4750:3:102:0,-32.3674,-414.669	0/0:60:60,0:60:2082:0:0:0,-18.0618,-186.851
chr03	7203833	.	CAA	GAA	134372	PASS	AB=0.435535;ABP=105.198;AC=156;AF=0.829787;AN=188;AO=6292;CIGAR=1X2M;DP=7909;DPB=7909;DPRA=0;EPP=13665.9;EPPR=3492.57;GTI=2;LEN=1;MEANALT=1.08511;MQM=48.4512;MQMR=48.3211;NS=94;NUMALT=1;ODDS=1.55231;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224564;QR=56876;RO=1607;RPL=6292;RPP=13665.9;RPPR=3492.57;RPR=0;RUN=1;SAF=0;SAP=13665.9;SAR=6292;SRF=0;SRP=3492.57;SRR=1607;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:10,8:10:345:8:288:-20.5594,0,-25.6666	0/1:117:55,62:55:1959:62:2218:-162.02,0,-138.704	0/1:170:86,84:86:3044:84:2996:-215.611,0,-217.213	1/1:203:0,203:0:0:203:7205:-643.223,-61.1091,0	1/1:62:0,62:0:0:62:2223:-198.716,-18.6639,0	1/1:44:0,44:0:0:44:1566:-139.06,-13.2453,0	1/1:116:0,116:0:0:116:4163:-372.634,-34.9195,0	0/1:130:70,60:70:2508:60:2131:-150.453,0,-183.393	1/1:52:0,52:0:0:52:1869:-166.402,-15.6536,0	1/1:83:0,83:0:0:83:2960:-264.596,-24.9855,0	1/1:42:0,39:0:0:39:1380:-123.44,-11.7402,0	0/1:49:32,17:32:1121:17:605:-39.2051,0,-85.0679	0/1:42:18,24:18:646:24:864:-64.6064,0,-45.1993	1/1:37:0,37:0:0:37:1325:-117.996,-11.1381,0	1/1:37:0,37:0:0:37:1328:-119.322,-11.1381,0	1/1:33:0,33:0:0:33:1162:-103.929,-9.93399,0	1/1:33:0,33:0:0:33:1181:-104.817,-9.93399,0	1/1:31:0,31:0:0:31:1116:-99.6966,-9.33193,0	1/1:28:0,28:0:0:28:985:-87.7659,-8.42884,0	1/1:223:0,223:0:0:223:7959:-710.911,-67.1297,0	1/1:99:0,98:0:0:98:3490:-309.499,-29.5009,0	0/1:160:100,59:100:3528:59:2107:-140.476,0,-267.476	1/1:63:0,63:0:0:63:2268:-203.073,-18.9649,0	1/1:91:0,91:0:0:91:3218:-286.892,-27.3937,0	1/1:68:0,68:0:0:68:2422:-216.279,-20.47,0	0/1:290:143,147:143:5046:147:5276:-385.852,0,-365.225	1/1:116:0,116:0:0:116:4148:-369.774,-34.9195,0	1/1:18:0,18:0:0:18:643:-57.428,-5.41854,0	0/1:298:165,133:165:5816:133:4752:-335.688,0,-429.689	1/1:110:1,109:1:36:109:3898:-344.014,-29.5399,0	1/1:121:1,120:1:36:120:4274:-378.222,-32.8416,0	0/1:12:4,8:4:144:8:284:-22.1096,0,-9.60935	1/1:21:0,21:0:0:21:745:-66.5306,-6.32163,0	1/1:3:0,3:0:0:3:108:-9.96413,-0.90309,0	1/1:10:0,10:0:0:10:357:-31.8742,-3.0103,0	0/1:23:16,7:16:564:7:252:-15.8515,0,-42.8819	1/1:122:0,122:0:0:122:4367:-391.842,-36.7257,0	1/1:192:1,190:1:36:190:6768:-600.548,-54.2806,0	0/1:44:21,23:21:754:23:824:-60.462,0,-54.2268	1/1:2:0,2:0:0:2:72:-6.76585,-0.60206,0	0/1:143:74,69:74:2636:69:2465:-176.514,0,-191.377	0/1:36:22,14:22:782:14:500:-34.2149,0,-58.166	1/1:125:0,124:0:0:124:4445:-396.5,-37.3277,0	1/1:43:0,43:0:0:43:1535:-137.849,-12.9443,0	1/1:51:0,51:0:0:51:1811:-161.944,-15.3525,0	0/1:62:31,31:31:1101:31:1112:-81.4176,0,-80.3457	1/1:96:1,95:1:36:95:3392:-298.468,-25.3403,0	1/1:228:0,228:0:0:228:8162:-729.258,-68.6348,0	1/1:104:0,104:0:0:104:3723:-332.204,-31.3071,0	0/1:136:77,59:77:2746:59:2099:-146.723,0,-204.102	1/1:169:0,169:0:0:169:6052:-542.017,-50.8741,0	1/1:6:0,6:0:0:6:212:-19.3458,-1.80618,0	0/1:119:76,43:76:2708:43:1540:-101.574,0,-205.267	1/1:33:0,33:0:0:33:1175:-105.374,-9.93399,0	1/1:11:0,11:0:0:11:385:-34.3725,-3.31133,0	0/1:100:57,43:57:2001:43:1517:-104.573,0,-149.072	0/1:37:20,17:20:684:17:612:-44.0234,0,-50.5141	0/1:9:6,3:6:208:3:108:-7.34057,0,-16.3064	1/1:20:0,20:0:0:20:707:-63.3822,-6.0206,0	1/1:112:0,112:0:0:112:4000:-357.412,-33.7154,0	0/1:89:41,48:41:1444:48:1724:-127.994,0,-102.764	1/1:13:0,13:0:0:13:464:-41.9292,-3.91339,0	1/1:198:0,198:0:0:198:7084:-635.114,-59.6039,0	1/1:173:2,170:2:63:170:6076:-536.899,-46.1164,0	1/1:68:1,67:1:36:67:2396:-209.351,-16.8966,0	1/1:90:0,90:0:0:90:3203:-284.998,-27.0927,0	1/1:148:0,148:0:0:148:5304:-474.53,-44.5524,0	0/1:163:127,36:127:4525:36:1280:-65.9647,0,-354.775	1/1:8:0,8:0:0:8:288:-26.0861,-2.40824,0	1/1:69:0,69:0:0:69:2461:-219.079,-20.7711,0	0/1:55:30,25:30:1052:25:892:-63.6451,0,-78.0597	1/1:24:0,24:0:0:24:856:-77.0211,-7.22472,0	1/1:55:0,54:0:0:54:1931:-171.384,-16.2556,0	1/1:55:0,55:0:0:55:1967:-174.655,-16.5567,0	1/1:103:0,102:0:0:102:3622:-322.445,-30.7051,0	1/1:168:0,168:0:0:168:6008:-537.377,-50.573,0	0/1:126:64,62:64:2261:62:2195:-156.658,0,-162.849	0/1:71:40,31:40:1413:31:1112:-77.9531,0,-103.995	0/1:17:13,4:13:453:4:144:-8.04937,0,-35.5769	1/1:111:0,111:0:0:111:3955:-352.22,-33.4143,0	1/1:99:0,99:0:0:99:3532:-314.443,-29.802,0	1/1:221:0,221:0:0:221:7864:-702.703,-66.5276,0	1/1:80:0,80:0:0:80:2856:-256.004,-24.0824,0	0/1:31:16,15:16:574:15:540:-39.1653,0,-42.4604	0/1:55:29,26:29:1016:26:932:-67.0781,0,-74.4857	0/1:95:59,36:59:2107:36:1279:-85.784,0,-160.31	1/1:23:0,23:0:0:23:808:-71.819,-6.92369,0	1/1:56:0,56:0:0:56:2006:-178.32,-16.8577,0	1/1:56:0,56:0:0:56:1985:-176.358,-16.8577,0	0/1:26:19,7:19:668:7:246:-13.9938,0,-51.8211	0/1:54:33,21:33:1173:21:728:-48.3977,0,-87.6154	0/1:54:43,11:43:1500:11:372:-16.9122,0,-118.359	1/1:141:3,138:3:106:138:4921:-430.24,-32.6145,0	1/1:61:0,61:0:0:61:2184:-195.759,-18.3628,0
chr03	7429152	.	A	T	21935.2	PASS	AB=0.564299;ABP=82.8744;AC=32;AF=0.170213;AN=188;AO=1265;CIGAR=1X;DP=5989;DPB=5989;DPRA=1.40884;EPP=2689.46;EPPR=10163.6;GTI=4;LEN=1;MEANALT=1;MQM=52.1455;MQMR=59.9708;NS=94;NUMALT=1;ODDS=0.7475;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45339;QR=169291;RO=4723;RPL=1258;RPP=2689.46;RPPR=10163.6;RPR=7;RUN=1;SAF=1265;SAP=2749.92;SAR=0;SRF=4723;SRP=10258.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:13,17:13:468:17:608:-45.6078,0,-33.4287	0/1:94:40,54:40:1436:54:1932:-144.76,0,-101.241	0/1:91:40,51:40:1436:51:1823:-134.542,0,-102.144	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.365	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.1885	0/0:90:88,2:88:3133:2:72:0,-20.2657,-275.368	0/1:110:66,44:66:2372:44:1584:-108.301,0,-180.624	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2074	0/1:44:19,25:19:680:25:891:-66.7569,0,-48.2838	0/1:47:18,29:18:644:29:1044:-79.2511,0,-44.1422	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.569	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:186:186,0:186:6668:0:0:0,-55.9916,-599.969	0/0:78:77,1:77:2744:1:36:0,-19.8821,-243.605	0/1:119:27,92:27:972:92:3291:-259.782,0,-51.9753	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:230:105,125:105:3776:125:4488:-333.715,0,-270.8	0/0:161:161,0:161:5750:0:0:0,-48.4658,-517.614	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:270:140,130:140:5032:130:4661:-337.833,0,-371.746	0/0:77:76,1:76:2720:1:36:0,-19.5901,-241.454	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:6:2,4:2:72:4:144:-11.4353,0,-5.03054	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:141:141,0:141:5072:0:0:0,-42.4452,-456.622	0/1:16:3,13:3:104:13:468:-37.4021,0,-4.88633	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:119:60,59:60:2160:59:2116:-154.396,0,-158.844	0/1:19:9,10:9:324:10:360:-26.7212,0,-23.7863	0/0:125:125,0:125:4467:0:0:0,-37.6287,-402.144	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:77:29,48:29:1044:48:1724:-132.116,0,-71.0955	0/0:85:84,1:84:3016:1:36:0,-22.0088,-268.092	0/0:175:175,0:175:6273:0:0:0,-52.6802,-564.661	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/1:86:36,50:36:1292:50:1800:-135.527,0,-90.6952	0/0:145:145,0:145:5204:0:0:0,-43.6493,-468.497	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:152:72,80:72:2588:80:2872:-210.862,0,-187.412	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:100:36,64:36:1296:64:2291:-175.22,0,-86.8409	0/1:31:16,15:16:572:15:540:-39.5052,0,-42.4815	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:58:21,37:21:756:37:1332:-102.538,0,-50.9075	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:142:141,1:141:5068:1:36:0,-39.148,-452.664	0/0:151:151,0:151:5397:0:0:0,-45.4555,-485.86	0/0:37:36,1:36:1284:1:36:0,-7.54888,-112.274	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:88:25,63:25:892:63:2240:-174.436,0,-54.109	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:51:18,33:18:648:33:1175:-90.5006,0,-43.2994	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.714	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.541	0/0:148:148,0:148:5276:0:0:0,-44.5524,-474.976	0/1:90:38,52:38:1364:52:1860:-139.706,0,-95.968	0/1:81:34,47:34:1216:47:1684:-126.614,0,-85.3631	0/1:19:12,7:12:428:7:252:-17.1578,0,-33.1392	0/0:86:86,0:86:3088:0:0:0,-25.8886,-277.719	0/0:75:74,1:74:2648:1:36:0,-18.9985,-234.988	0/0:184:183,1:183:6564:1:36:0,-51.7912,-587.242	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:34:18,16:18:648:16:576:-41.866,0,-48.4169	0/1:31:17,14:17:608:14:504:-36.1756,0,-45.7201	0/1:59:25,34:25:900:34:1220:-91.8788,0,-63.5602	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:30:29,0:29:1044:0:0:0,-8.72987,-93.915	0/1:8:5,3:5:180:3:108:-7.6416,0,-14.1438	0/1:32:14,18:14:500:18:648:-48.6595,0,-35.7032	0/1:32:11,21:11:396:21:743:-57.3884,0,-26.3498	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539
chr03	7504563	.	C	G	67301.8	PASS	AB=0.506639;ABP=5.5474;AC=32;AF=0.170213;AN=188;AO=3391;CIGAR=1X;DP=18340;DPB=18340;DPRA=1.24573;EPP=7366.47;EPPR=32449.2;GTI=1;LEN=1;MEANALT=1.04545;MQM=45.6948;MQMR=45.9971;NS=94;NUMALT=1;ODDS=1.73829;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120093;QR=532783;RO=14942;RPL=1747;RPP=9.80392;RPPR=323.92;RPR=1644;RUN=1;SAF=1747;SAP=9.80392;SAR=1644;SRF=6728;SRP=323.92;SRR=8214;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:136:85,51:85:3034:51:1816:-112.468,0,-223.152	0/1:225:119,106:119:4268:106:3759:-198.836,0,-274.41	0/1:288:131,157:131:4654:157:5568:-368.059,0,-303.099	0/0:261:261,0:261:9274:0:0:0,-78.5688,-792.064	0/0:116:114,2:114:4070:2:72:0,-29.4042,-335.906	0/0:92:92,0:92:3281:0:0:0,-27.6948,-269.248	0/0:191:189,2:189:6746:2:72:0,-52.3643,-563.599	0/1:390:186,204:186:6646:204:7256:-453.795,0,-416.217	0/0:182:180,0:180:6389:0:0:0,-54.1854,-520.875	0/0:274:271,3:271:9688:3:108:0,-73.736,-818.233	0/0:171:170,1:170:6057:1:36:0,-47.8779,-514.485	0/1:272:149,123:149:5275:123:4364:-280.276,0,-360.293	0/1:233:113,120:113:4030:120:4238:-261.486,0,-265.812	0/0:199:199,0:199:7056:0:0:0,-59.905,-596.289	0/0:195:195,0:195:6947:0:0:0,-58.7008,-600.509	0/0:164:164,0:164:5848:0:0:0,-49.3689,-500.269	0/0:135:135,0:135:4804:0:0:0,-40.639,-379.489	0/0:126:126,0:126:4462:0:0:0,-37.9298,-358.427	0/0:85:85,0:85:3056:0:0:0,-25.5875,-245.77	0/0:339:339,0:339:12146:0:0:0,-102.049,-1035.67	0/0:387:387,0:387:13747:0:0:0,-116.499,-1167.63	0/1:90:36,54:36:1283:54:1889:-134.535,0,-83.3334	0/0:204:204,0:204:7311:0:0:0,-61.4101,-630.794	0/0:223:222,1:222:7914:1:36:0,-64.2269,-646.675	0/0:87:87,0:87:3083:0:0:0,-26.1896,-262.465	0/1:505:245,260:245:8745:260:9199:-623.974,0,-602.043	0/0:461:460,0:460:16418:0:0:0,-138.474,-1379.03	0/0:104:104,0:104:3697:0:0:0,-31.3071,-311.437	0/1:377:186,191:186:6636:191:6787:-463.714,0,-459.668	0/0:133:132,1:132:4724:1:36:0,-36.4387,-393.869	0/0:258:258,0:258:9191:0:0:0,-77.6657,-779.688	0/1:4:2,2:2:72:2:72:-4.64501,0,-5.24248	0/0:33:33,0:33:1175:0:0:0,-9.93399,-96.5175	0/0:12:12,0:12:432:0:0:0,-3.61236,-33.9323	0/0:14:14,0:14:504:0:0:0,-4.21442,-38.567	0/1:30:17,13:17:593:13:460:-28.2976,0,-37.2694	0/0:474:474,0:474:16871:0:0:0,-142.688,-1473.7	0/0:197:197,0:197:7028:0:0:0,-59.3029,-576.805	0/1:151:91,60:91:3243:60:2127:-120.735,0,-213.626	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.4308	0/1:283:136,147:136:4842:147:5229:-340.693,0,-319.809	0/1:74:31,43:31:1097:43:1536:-103.366,0,-70.9408	0/0:394:394,0:394:14029:0:0:0,-118.606,-1185.38	0/0:234:233,0:233:8317:0:0:0,-70.14,-712.866	0/0:170:170,0:170:6052:0:0:0,-51.1751,-512.763	0/1:218:122,95:122:4359:95:3373:-226.022,0,-317.413	0/0:163:163,0:163:5830:0:0:0,-49.0679,-480.41	0/0:405:404,1:404:14402:1:36:0,-118.319,-1233.02	0/0:206:206,0:206:7330:0:0:0,-62.0122,-628.843	0/1:222:103,119:103:3672:119:4220:-282.622,0,-242.847	0/0:171:171,0:171:6059:0:0:0,-51.4761,-512.365	0/0:19:19,0:19:684:0:0:0,-5.71957,-57.6557	0/1:205:99,106:99:3537:106:3770:-244.762,0,-228.308	0/0:92:92,0:92:3275:0:0:0,-27.6948,-288.985	0/0:7:7,0:7:243:0:0:0,-2.10721,-21.7103	0/1:279:139,140:139:4939:140:4963:-332.551,0,-331.563	0/1:125:42,83:42:1512:83:2915:-204.28,0,-91.1277	0/1:22:15,7:15:540:7:252:-14.1528,0,-40.6233	0/0:20:20,0:20:711:0:0:0,-6.0206,-61.9205	0/0:221:221,0:221:7895:0:0:0,-66.5276,-679.102	0/1:223:113,110:113:4044:110:3907:-264.926,0,-281.781	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.3471	0/0:215:215,0:215:7659:0:0:0,-64.7214,-664.439	0/0:344:337,7:337:12029:7:252:0,-81.3933,-1000.56	0/0:169:157,12:157:5628:12:432:0,-16.3877,-433.277	0/0:127:127,0:127:4541:0:0:0,-38.2308,-386.99	0/0:411:410,1:410:14652:1:36:0,-120.125,-1261.65	0/1:229:84,145:84:2999:145:5143:-371.241,0,-192.059	0/0:102:102,0:102:3632:0:0:0,-30.7051,-313.089	0/0:158:158,0:158:5659:0:0:0,-47.5627,-456.25	0/1:166:102,64:102:3640:64:2287:-144.535,0,-265.95	0/0:33:33,0:33:1184:0:0:0,-9.93399,-102.537	0/0:198:197,1:197:7017:1:36:0,-56.8677,-592.656	0/0:196:196,0:196:6978:0:0:0,-59.0019,-589.705	0/0:405:405,0:405:14431:0:0:0,-121.917,-1196.21	0/0:283:283,0:283:10147:0:0:0,-85.1915,-864.494	0/1:284:113,170:113:4031:170:6038:-404.276,0,-241.574	0/1:240:134,106:134:4803:106:3750:-213.835,0,-312.609	0/1:23:15,8:15:523:8:279:-16.5575,0,-35.3925	0/0:220:220,0:220:7875:0:0:0,-66.2266,-654.808	0/0:193:193,0:193:6886:0:0:0,-58.0988,-550.424	0/0:328:327,1:327:11674:1:36:0,-95.6142,-999.655	0/0:174:173,0:173:6128:0:0:0,-52.0782,-524.948	0/1:168:85,83:85:3014:83:2954:-198.879,0,-213.211	0/1:210:118,92:118:4184:92:3225:-202.897,0,-293.374	0/1:380:200,180:200:7123:180:6298:-415.881,0,-499.348	0/0:76:76,0:76:2706:0:0:0,-22.8783,-214.818	0/0:216:216,0:216:7656:0:0:0,-65.0225,-629.638	0/0:169:169,0:169:6055:0:0:0,-50.8741,-500.284	0/1:132:70,62:70:2512:62:2183:-138.625,0,-170.109	0/1:172:79,93:79:2785:93:3280:-219.342,0,-181.197	0/1:272:108,164:108:3854:164:5768:-413.823,0,-255.746	0/0:131:131,0:131:4666:0:0:0,-39.4349,-404.76	0/0:333:333,0:333:11913:0:0:0,-100.243,-1033.12
chr03	7504596	.	G	A	18022.3	PASS	AB=0.478949;ABP=16.6325;AC=32;AF=0.170213;AN=188;AO=1718;CIGAR=1X;DP=10091;DPB=10091;DPRA=1.14462;EPP=3733.6;EPPR=18173.9;GTI=1;LEN=1;MEANALT=1.07317;MQM=30.4802;MQMR=34.5207;NS=94;NUMALT=1;ODDS=1.32521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61480;QR=299293;RO=8368;RPL=1718;RPP=3733.6;RPPR=18173.9;RPR=0;RUN=1;SAF=0;SAP=3733.6;SAR=1718;SRF=0;SRP=18173.9;SRR=8368;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:24,14:24:860:14:504:-23.1496,0,-53.721	0/1:170:79,91:79:2816:91:3250:-165.197,0,-161.697	0/1:128:58,70:58:2071:70:2500:-131.296,0,-118.234	0/0:176:176,0:176:6270:0:0:0,-52.9813,-517.954	0/0:71:69,2:69:2471:2:72:0,-15.8579,-190.805	0/0:50:50,0:50:1766:0:0:0,-15.0515,-133.764	0/0:136:135,1:135:4822:1:36:0,-37.8164,-391.098	0/1:232:126,106:126:4495:106:3792:-186.602,0,-263.682	0/0:101:101,0:101:3599:0:0:0,-30.404,-270.715	0/0:173:170,3:170:6055:3:104:0,-43.4976,-491.939	0/0:90:90,0:90:3220:0:0:0,-27.0927,-262.485	0/1:100:61,39:61:2192:39:1392:-63.2514,0,-132.553	0/1:117:53,64:53:1904:64:2291:-117.931,0,-107.699	0/0:101:101,0:101:3598:0:0:0,-30.404,-285.173	0/0:89:89,0:89:3196:0:0:0,-26.7917,-262.036	0/0:72:71,1:71:2535:1:36:0,-18.6196,-197.99	0/0:97:97,0:97:3484:0:0:0,-29.1999,-256.929	0/0:83:83,0:83:2968:0:0:0,-24.9855,-220.011	0/0:57:57,0:57:2048:0:0:0,-17.1587,-154.532	0/0:227:227,0:227:8123:0:0:0,-68.3338,-672.958	0/0:179:179,0:179:6397:0:0:0,-53.8844,-504.777	0/1:44:20,24:20:711:24:849:-53.9701,0,-46.9013	0/0:96:96,0:96:3439:0:0:0,-28.8989,-280.759	0/0:165:164,1:164:5884:1:36:0,-46.7672,-460.248	0/0:33:33,0:33:1184:0:0:0,-9.93399,-91.5998	0/1:329:176,151:176:6295:151:5393:-330.412,0,-432.005	0/0:249:249,0:249:8911:0:0:0,-74.9565,-700.691	0/0:50:50,0:50:1783:0:0:0,-15.0515,-139.033	0/1:226:117,109:117:4196:109:3888:-241.779,0,-285.415	0/0:69:69,0:69:2480:0:0:0,-20.7711,-196.473	0/0:181:181,0:181:6504:0:0:0,-54.4864,-535.892	0/1:2:1,1:1:36:1:36:-1.95665,0,-2.58556	0/0:28:28,0:28:995:0:0:0,-8.42884,-78.3168	0/0:10:10,0:10:360:0:0:0,-3.0103,-27.4457	0/0:11:11,0:11:387:0:0:0,-3.31133,-28.7963	0/1:22:16,6:16:576:6:216:-8.42645,0,-36.4903	0/0:222:222,0:222:7940:0:0:0,-66.8287,-668.387	0/0:126:126,0:126:4500:0:0:0,-37.9298,-352.24	0/1:96:61,35:61:2175:35:1256:-55.9433,0,-133.387	0/0:2:2,0:2:68:0:0:0,-0.60206,-5.78239	0/1:165:86,79:86:3080:79:2824:-153.095,0,-194.14	0/1:37:15,22:15:531:22:792:-46.4024,0,-31.4417	0/0:196:195,0:195:6973:0:0:0,-58.7008,-548.792	0/0:136:136,0:136:4851:0:0:0,-40.9401,-398.037	0/0:107:107,0:107:3832:0:0:0,-32.2102,-309.826	0/1:81:49,32:49:1752:32:1139:-64.7459,0,-123.182	0/0:75:75,0:75:2692:0:0:0,-22.5772,-197.25	0/0:205:205,0:205:7347:0:0:0,-61.7111,-599.917	0/0:120:120,0:120:4304:0:0:0,-36.1236,-354.869	0/1:145:76,69:76:2689:69:2467:-145.507,0,-175.361	0/0:154:154,0:154:5507:0:0:0,-46.3586,-459.072	0/0:17:17,0:17:612:0:0:0,-5.11751,-51.1759	0/1:95:50,44:50:1792:44:1580:-78.002,0,-102.84	0/0:42:42,0:42:1508:0:0:0,-12.6433,-129.341	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.05454	0/1:120:67,53:67:2390:53:1904:-101.784,0,-150.025	0/1:73:24,49:24:864:49:1760:-113.939,0,-46.7915	0/1:19:12,7:12:432:7:248:-14.8524,0,-31.8079	0/0:17:17,0:17:612:0:0:0,-5.11751,-52.9047	0/0:82:82,0:82:2940:0:0:0,-24.6845,-230.727	0/1:106:56,50:56:2008:50:1792:-107.035,0,-132.905	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.3923	0/0:139:139,0:139:4963:0:0:0,-41.8432,-421.105	0/0:228:224,4:224:8008:4:144:0,-56.964,-646.341	0/0:102:94,8:94:3367:8:288:0,-9.82883,-244.619	0/0:73:73,0:73:2579:0:0:0,-21.9752,-208.472	0/0:207:207,0:207:7399:0:0:0,-62.3132,-612.97	0/1:91:34,57:34:1220:57:2044:-130.445,0,-73.5496	0/0:38:38,0:38:1364:0:0:0,-11.4391,-108.333	0/0:96:96,0:96:3418:0:0:0,-28.8989,-255.962	0/1:96:61,35:61:2184:35:1260:-72.4668,0,-156.548	0/0:13:13,0:13:468:0:0:0,-3.91339,-37.9842	0/0:74:71,2:71:2552:2:72:0,-16.8887,-185.672	0/0:67:67,0:67:2387:0:0:0,-20.169,-177.881	0/0:233:233,0:233:8331:0:0:0,-70.14,-642.914	0/0:166:166,0:166:5929:0:0:0,-49.971,-485.859	0/1:153:73,80:73:2612:80:2859:-146.003,0,-147.959	0/1:154:82,72:82:2935:72:2568:-125.163,0,-172.875	0/1:14:11,3:11:392:3:104:-3.20517,0,-26.0517	0/0:148:148,0:148:5287:0:0:0,-44.5524,-420.781	0/0:119:119,0:119:4252:0:0:0,-35.8226,-316.305	0/0:179:178,1:178:6384:1:36:0,-50.7607,-522.199	0/0:107:107,0:107:3840:0:0:0,-32.2102,-315.928	0/1:73:34,39:34:1220:39:1404:-87.1795,0,-78.4268	0/1:141:80,61:80:2872:61:2188:-125.555,0,-192.704	0/1:203:111,92:111:3961:92:3300:-193.878,0,-266.799	0/0:51:51,0:51:1815:0:0:0,-15.3525,-133.883	0/0:114:114,0:114:4087:0:0:0,-34.3174,-305.943	0/0:91:91,0:91:3246:0:0:0,-27.3937,-245.883	0/1:76:43,33:43:1544:33:1180:-63.1486,0,-99.2089	0/1:87:45,42:45:1603:42:1508:-82.4248,0,-98.7816	0/1:106:40,66:40:1436:66:2368:-151.163,0,-87.8646	0/0:56:56,0:56:2004:0:0:0,-16.8577,-164.979	0/0:150:150,0:150:5388:0:0:0,-45.1545,-443.073
chr03	7600733	.	C	T	29513	PASS	AB=0.499144;ABP=3.03261;AC=32;AF=0.170213;AN=188;AO=1772;CIGAR=1X;DP=9786;DPB=9786;DPRA=1.12232;EPP=3850.86;EPPR=17394.3;GTI=0;LEN=1;MEANALT=1.02381;MQM=60;MQMR=59.9874;NS=94;NUMALT=1;ODDS=2.4948;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63393;QR=285763;RO=8009;RPL=0;RPP=3850.86;RPPR=17394.3;RPR=1772;RUN=1;SAF=1772;SAP=3850.86;SAR=0;SRF=8009;SRP=17394.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:35,22:35:1236:22:777:-53.0917,0,-94.3855	0/1:139:64,75:64:2279:75:2662:-197.98,0,-163.528	0/1:137:76,61:76:2693:61:2188:-155.945,0,-201.373	0/0:185:185,0:185:6632:0:0:0,-55.6905,-596.958	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/1:141:74,67:74:2656:67:2393:-173.18,0,-196.84	0/0:76:76,0:76:2685:0:0:0,-22.8783,-241.895	0/0:98:98,0:98:3479:0:0:0,-29.5009,-313.323	0/0:80:80,0:80:2863:0:0:0,-24.0824,-257.907	0/1:77:46,31:46:1640:31:1112:-77.212,0,-124.709	0/1:78:34,44:34:1216:44:1572:-118.291,0,-86.2662	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.889	0/0:88:88,0:88:3151:0:0:0,-26.4906,-283.814	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.545	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.03	0/0:207:207,0:207:7369:0:0:0,-62.3132,-663.262	0/0:141:141,0:141:5016:0:0:0,-42.4452,-451.591	0/1:110:28,82:28:1004:82:2948:-232.44,0,-57.5626	0/0:86:84,2:84:3008:2:72:0,-19.0519,-264.115	0/0:189:189,0:189:6735:0:0:0,-56.8947,-606.228	0/0:109:109,0:109:3883:0:0:0,-32.8123,-349.666	0/1:318:165,153:165:5892:153:5492:-398.677,0,-434.664	0/0:235:235,0:235:8396:0:0:0,-70.742,-755.647	0/0:53:52,1:52:1872:1:36:0,-12.3563,-165.161	0/1:291:138,153:138:4889:153:5480:-405.727,0,-352.561	0/0:99:93,6:93:3328:6:216:0,-10.0115,-279.947	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.384	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	0/0:212:211,1:211:7554:1:36:0,-60.2201,-676.3	0/0:118:118,0:118:4228:0:0:0,-35.5215,-380.7	0/1:74:38,36:38:1359:36:1296:-94.6677,0,-100.334	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:125:57,68:57:2036:68:2448:-182.946,0,-145.884	0/1:52:26,26:26:928:26:936:-68.9059,0,-68.1847	0/0:143:142,0:142:5067:0:0:0,-42.7463,-455.389	0/0:120:120,0:120:4278:0:0:0,-36.1236,-385.198	0/0:91:90,1:90:3199:1:36:0,-23.7955,-284.536	0/1:115:70,44:70:2512:44:1557:-105.743,0,-191.655	0/0:112:111,1:111:3947:1:36:0,-30.1171,-351.826	0/0:198:198,0:198:7076:0:0:0,-59.6039,-636.9	0/0:90:90,0:90:3212:0:0:0,-27.0927,-289.304	0/1:152:88,64:88:3125:64:2281:-159.794,0,-235.72	0/0:319:319,0:319:11337:0:0:0,-96.0286,-1020.22	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:138:72,66:72:2559:66:2361:-171.204,0,-189.018	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:155:100,55:100:3555:55:1972:-131.095,0,-273.5	0/1:73:26,47:26:932:47:1671:-128.7,0,-62.2237	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:100:100,0:100:3555:0:0:0,-30.103,-320.16	0/1:190:88,102:88:3139:102:3657:-272.136,0,-225.54	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:189:189,0:189:6755:0:0:0,-56.8947,-608.024	0/0:176:171,5:171:6105:5:180:0,-36.4292,-532.999	0/0:124:120,4:120:4288:4:135:0,-24.8452,-373.616	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/0:146:145,1:145:5171:1:36:0,-40.3521,-461.934	0/1:143:43,100:43:1540:100:3547:-276.388,0,-95.8458	0/0:50:49,1:49:1744:1:36:0,-11.4532,-153.646	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.488	0/1:106:50,56:50:1788:56:2004:-148.724,0,-129.293	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:94:94,0:94:3344:0:0:0,-28.2968,-301.179	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:125:125,0:125:4438:0:0:0,-37.6287,-399.591	0/0:147:147,0:147:5231:0:0:0,-44.2514,-470.931	0/1:110:73,37:73:2612:37:1316:-85.6272,0,-202.215	0/1:125:63,62:63:2264:62:2232:-163.515,0,-166.394	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.817	0/0:97:97,0:97:3448:0:0:0,-29.1999,-310.535	0/0:269:267,0:267:9532:0:0:0,-80.375,-857.481	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/1:97:52,45:52:1852:45:1608:-115.81,0,-137.76	0/1:78:40,38:40:1423:38:1360:-99.2203,0,-104.886	0/1:146:72,74:72:2563:74:2648:-194.615,0,-186.97	0/0:52:51,0:51:1832:0:0:0,-15.3525,-164.801	0/0:81:81,0:81:2890:0:0:0,-24.3834,-260.335	0/0:90:90,0:90:3194:0:0:0,-27.0927,-287.684	0/1:74:39,35:39:1396:35:1250:-90.5285,0,-103.663	0/1:103:55,48:55:1968:48:1724:-124.439,0,-146.389	0/1:72:27,45:27:972:45:1614:-123.876,0,-66.1237	0/0:111:111,0:111:3960:0:0:0,-33.4143,-356.593	0/0:110:110,0:110:3939:0:0:0,-33.1133,-354.384
chr03	7600745	.	G	C	175008	PASS	AB=0.501573;ABP=3.08544;AC=156;AF=0.829787;AN=188;AO=8013;CIGAR=1X;DP=9781;DPB=9781;DPRA=0;EPP=17307.6;EPPR=3798.79;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9843;MQMR=60;NS=94;NUMALT=1;ODDS=2.79746;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286705;QR=63062;RO=1760;RPL=11;RPP=17307.6;RPPR=3798.79;RPR=8002;RUN=1;SAF=8013;SAP=17403;SAR=0;SRF=1760;SRP=3824.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:22,35:22:777:35:1260:-96.5468,0,-53.0917	0/1:138:74,64:74:2647:64:2300:-165.719,0,-196.934	0/1:134:58,76:58:2080:76:2712:-203.986,0,-147.132	1/1:181:0,181:0:0:181:6481:-583.374,-54.4864,0	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:65:0,65:0:0:65:2327:-209.689,-19.567,0	0/1:137:65,72:65:2332:72:2569:-190.217,0,-168.898	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:98:0,97:0:0:97:3484:-313.252,-29.1999,0	1/1:79:0,79:0:0:79:2814:-253.498,-23.7814,0	0/1:80:33,47:33:1168:47:1675:-126.954,0,-81.3448	0/1:78:44,34:44:1572:34:1220:-86.6265,0,-118.291	1/1:126:0,126:0:0:126:4519:-406.876,-37.9298,0	1/1:87:0,87:0:0:87:3132:-282.105,-26.1896,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	1/1:93:0,93:0:0:93:3311:-298.209,-27.9958,0	1/1:76:0,76:0:0:76:2715:-244.593,-22.8783,0	1/1:45:0,45:0:0:45:1609:-145.077,-13.5464,0	1/1:208:0,208:0:0:208:7444:-670.005,-62.6142,0	1/1:141:0,141:0:0:141:5018:-451.768,-42.4452,0	0/1:109:82,27:82:2937:27:964:-54.2646,0,-231.75	1/1:87:0,87:0:0:87:3093:-278.597,-26.1896,0	1/1:190:0,190:0:0:190:6806:-612.61,-57.1957,0	1/1:108:0,108:0:0:108:3872:-348.674,-32.5112,0	0/1:320:156,164:156:5577:164:5872:-432.259,0,-405.723	1/1:235:0,235:0:0:235:8405:-756.453,-70.7421,0	1/1:53:1,52:1:36:52:1852:-163.361,-12.3563,0	0/1:290:153,137:153:5488:137:4877:-351.761,0,-406.747	1/1:101:6,95:6:216:95:3399:-286.334,-10.6135,0	1/1:114:0,114:0:0:114:4100:-369.181,-34.3174,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:212:0,212:0:0:212:7566:-680.982,-63.8184,0	1/1:120:0,120:0:0:120:4295:-386.727,-36.1236,0	0/1:75:37,38:37:1324:38:1364:-100.483,0,-96.8848	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:129:70,59:70:2512:59:2112:-151.516,0,-187.499	0/1:52:26,26:26:936:26:932:-68.5453,0,-68.9059	1/1:142:0,141:0:0:141:5004:-450.124,-42.4452,0	1/1:121:0,121:0:0:121:4344:-391.134,-36.4246,0	1/1:92:0,92:0:0:92:3295:-296.768,-27.6948,0	0/1:117:43,74:43:1540:74:2640:-202.627,0,-103.673	1/1:111:1,110:1:36:110:3927:-350.025,-29.8161,0	1/1:197:0,197:0:0:197:7064:-635.818,-59.3029,0	1/1:90:0,90:0:0:90:3222:-290.202,-27.0927,0	0/1:151:64,87:64:2300:87:3111:-234.761,0,-161.805	1/1:321:0,321:0:0:321:11489:-1033.88,-96.6306,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:137:65,70:65:2332:70:2491:-183.444,0,-169.141	1/1:17:0,17:0:0:17:597:-54.0561,-5.11751,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:156:55,101:55:1964:101:3590:-276.347,0,-130.075	0/1:72:46,26:46:1647:26:936:-62.8853,0,-126.844	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:101:0,101:0:0:101:3615:-325.555,-30.404,0	0/1:188:101,87:101:3628:87:3128:-225.152,0,-270.13	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:185:0,185:0:0:185:6623:-596.148,-55.6906,0	1/1:179:5,174:5:180:174:6244:-545.501,-37.3323,0	1/1:124:4,120:4:140:120:4312:-375.31,-24.3831,0	1/1:92:0,92:0:0:92:3294:-296.679,-27.6948,0	1/1:144:1,143:1:36:143:5101:-455.636,-39.75,0	0/1:141:96,45:96:3444:45:1605:-102.294,0,-267.727	1/1:50:1,49:1:36:49:1751:-154.275,-11.4532,0	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	0/1:106:54,52:54:1944:52:1864:-136.13,0,-143.327	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	1/1:92:0,92:0:0:92:3295:-296.768,-27.6948,0	1/1:70:0,69:0:0:69:2476:-222.734,-20.7711,0	1/1:123:0,123:0:0:123:4403:-396.442,-37.0267,0	1/1:147:0,147:0:0:147:5252:-472.815,-44.2514,0	0/1:110:37,73:37:1324:73:2613:-202.304,0,-86.3488	0/1:124:60,64:60:2137:64:2283:-168.404,0,-155.268	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:119:0,119:0:0:119:4268:-384.297,-35.8226,0	1/1:98:0,98:0:0:98:3506:-315.75,-29.5009,0	1/1:267:0,267:0:0:267:9554:-859.815,-80.375,0	1/1:121:0,120:0:0:120:4300:-386.817,-36.1236,0	0/1:95:45,50:45:1620:50:1792:-132.965,0,-117.492	0/1:79:38,41:38:1368:41:1468:-108.635,0,-99.6395	0/1:146:74,71:74:2652:71:2535:-184.392,0,-194.917	1/1:50:0,50:0:0:50:1780:-160.483,-15.0515,0	1/1:80:1,79:1:36:79:2817:-250.17,-20.4841,0	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	0/1:75:36,39:36:1292:39:1396:-103.362,0,-94.0065	0/1:102:48,54:48:1720:54:1940:-144.171,0,-124.38	0/1:72:45,27:45:1616:27:968:-65.7632,0,-124.056	1/1:113:0,113:0:0:113:4036:-363.426,-34.0164,0	1/1:112:0,111:0:0:111:3975:-357.549,-33.4143,0
chr03	7844970	.	G	A	71260.6	PASS	AB=0.511521;ABP=4.76149;AC=157;AF=0.835106;AN=188;AO=3282;CIGAR=1X;DP=4030;DPB=4030;DPRA=21.6559;EPP=7121.1;EPPR=1627.27;GTI=2;LEN=1;MEANALT=1;MQM=59.9622;MQMR=59.9532;NS=94;NUMALT=1;ODDS=0.0949906;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117520;QR=26669;RO=748;RPL=3281;RPP=7121.1;RPPR=1627.27;RPR=1;RUN=1;SAF=3282;SAP=7129.78;SAR=0;SRF=748;SRP=1627.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:20,17:20:705:17:612:-44.2753,0,-52.6347	0/1:35:19,16:19:666:16:572:-41.2774,0,-49.7275	0/1:95:46,49:46:1648:49:1760:-130.086,0,-120.011	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:9:0,9:0:0:9:309:-28.1407,-2.70927,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:82:42,40:42:1474:40:1440:-105.213,0,-108.266	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:55:1,54:1:36:54:1944:-171.593,-12.9584,0	0/1:61:31,30:31:1099:30:1076:-78.79,0,-80.8566	0/1:48:20,28:20:716:28:1008:-76.5869,0,-50.3183	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:20:0,20:0:0:20:712:-64.4061,-6.0206,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:65:0,65:0:0:65:2336:-210.482,-19.567,0	1/1:69:0,69:0:0:69:2475:-223.004,-20.7711,0	0/1:33:22,11:22:792:11:396:-26.0488,0,-61.6717	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:50:0,50:0:0:50:1785:-160.931,-15.0515,0	0/1:91:38,53:38:1368:53:1900:-143.884,0,-96.0271	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:104:47,57:47:1688:57:2048:-153.284,0,-120.9	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:20:0,20:0:0:20:711:-64.3156,-6.0206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:111:0,111:0:0:111:3984:-358.749,-33.4143,0	1/1:82:0,82:0:0:82:2907:-261.864,-24.6845,0	0/1:24:6,18:6:216:18:648:-51.4272,0,-12.5658	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:39:16,23:16:572:23:824:-62.7431,0,-40.0733	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	1/1:63:0,63:0:0:63:2268:-204.311,-18.9649,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:57:29,28:29:1021:28:989:-72.1633,0,-75.0415	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	1/1:75:1,74:1:36:74:2656:-235.687,-18.979,0	1/1:58:0,58:0:0:58:2046:-184.408,-17.4597,0	0/1:56:27,29:27:972:29:1040:-77.0567,0,-70.9402	1/1:96:0,96:0:0:96:3424:-308.374,-28.8989,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:65:33,32:33:1180:32:1148:-84.0629,0,-86.9411	1/1:18:0,18:0:0:18:644:-58.1841,-5.41854,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:53:18,35:18:644:35:1252:-97.0305,0,-42.336	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:83:45,38:45:1616:38:1368:-98.4353,0,-120.615	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:59:0,59:0:0:59:2089:-188.278,-17.7608,0	1/1:54:0,54:0:0:54:1929:-173.886,-16.2556,0	1/1:35:1,34:1:36:34:1212:-105.787,-6.93778,0	1/1:35:0,35:0:0:35:1252:-112.963,-10.5361,0	1/1:103:0,103:0:0:103:3677:-331.087,-31.0061,0	0/1:64:37,27:37:1313:27:960:-67.4504,0,-99.2038	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:16:0,16:0:0:16:557:-50.4556,-4.81648,0	0/1:33:15,18:15:536:18:644:-48.3566,0,-38.6408	1/1:15:0,15:0:0:15:540:-48.8802,-4.51545,0	1/1:81:0,81:0:0:81:2887:-260.067,-24.3834,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:79:0,79:0:0:79:2832:-255.062,-23.7814,0	1/1:49:0,49:0:0:49:1741:-156.973,-14.7505,0	0/1:81:41,40:41:1472:40:1440:-105.514,0,-108.393	0/1:38:13,25:13:468:25:889:-68.8889,0,-31.0205	0/1:12:4,8:4:140:8:288:-22.655,0,-9.33222	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:116:0,116:0:0:116:4160:-374.582,-34.9195,0	1/1:34:1,33:1:21:33:1184:-104.768,-8.13507,0	0/1:40:25,15:25:876:15:540:-36.8953,0,-67.1131	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:78:41,37:41:1468:37:1332:-96.702,0,-108.936	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:44:0,44:0:0:44:1565:-141.141,-13.2453,0	0/1:31:16,15:16:567:15:540:-39.6046,0,-42.0288	0/1:98:46,52:46:1635:52:1872:-139.258,0,-117.892	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0
chr03	7939923	.	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chr03	7950522	.	G	A	2.19323e-10	PASS	AB=0.514493;ABP=7.54207;AC=33;AF=0.175532;AN=188;AO=1386;CIGAR=1X;DP=7254;DPB=7254;DPRA=1.17948;EPP=3012.67;EPPR=12723.5;GTI=31;LEN=1;MEANALT=1.02778;MQM=10.5779;MQMR=11.157;NS=94;NUMALT=1;ODDS=24.2138;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49575;QR=210057;RO=5866;RPL=1386;RPP=3012.67;RPPR=12732.2;RPR=0;RUN=1;SAF=0;SAP=3012.67;SAR=1386;SRF=1;SRP=12732.2;SRR=5865;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:33,26:33:1175:26:932:-7.96771,0,-15.242	0/1:51:23,28:23:828:28:1004:-12.4438,0,-7.50121	0/1:143:83,60:83:2971:60:2152:-15.9414,0,-39.3066	0/0:183:183,0:183:6549:0:0:0,-55.0885,-181.425	0/0:72:72,0:72:2580:0:0:0,-21.6742,-71.4826	0/0:49:49,0:49:1756:0:0:0,-14.7505,-48.5607	0/0:59:59,0:59:2104:0:0:0,-17.7608,-58.2644	0/1:89:47,42:47:1663:42:1489:-14.6337,0,-21.336	0/0:91:91,0:91:3230:0:0:0,-27.3937,-92.3986	0/0:48:48,0:48:1720:0:0:0,-14.4494,-49.7367	0/0:53:53,0:53:1896:0:0:0,-15.9546,-54.7687	0/1:105:52,53:52:1859:53:1877:-20.4208,0,-20.0008	0/1:73:30,43:30:1076:43:1548:-20.4759,0,-7.79888	0/0:60:60,0:60:2131:0:0:0,-18.0618,-59.3358	0/0:70:70,0:70:2516:0:0:0,-21.0721,-70.4816	0/0:79:79,0:79:2824:0:0:0,-23.7814,-79.4458	0/0:17:17,0:17:612:0:0:0,-5.11751,-16.9206	0/0:38:38,0:38:1368:0:0:0,-11.4391,-37.7766	0/0:40:40,0:40:1440:0:0:0,-12.0412,-39.9342	0/0:74:74,0:74:2652:0:0:0,-22.2762,-72.7414	0/0:131:131,0:131:4691:0:0:0,-39.4349,-129.995	0/1:18:11,7:11:396:7:252:-0.975184,0,-5.56884	0/0:85:85,0:85:3060:0:0:0,-25.5875,-83.714	0/0:39:39,0:39:1387:0:0:0,-11.7402,-38.5743	0/0:93:93,0:93:3332:0:0:0,-27.9958,-95.6515	0/1:233:133,100:133:4768:100:3560:-20.0137,0,-60.9412	0/0:128:128,0:128:4579:0:0:0,-38.5318,-129.008	0/0:41:41,0:41:1476:0:0:0,-12.3422,-40.7432	0/1:170:74,96:74:2656:96:3425:-35.2086,0,-21.4785	0/0:115:113,2:113:4047:2:72:0,-32.5308,-111.47	0/0:79:79,0:79:2840:0:0:0,-23.7814,-79.0121	0/1:7:4,3:4:144:3:108:-0.969255,0,-1.95812	0/0:10:10,0:10:360:0:0:0,-3.0103,-10.0892	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.09874	0/0:10:10,0:10:360:0:0:0,-3.0103,-10.0892	0/1:15:8,7:8:288:7:252:-2.51647,0,-3.50533	0/0:195:195,0:195:6966:0:0:0,-58.7008,-193.249	0/0:132:132,0:132:4732:0:0:0,-39.736,-133.062	0/1:56:22,34:22:792:34:1205:-16.7484,0,-5.0072	0/0:3:3,0:3:108:0:0:0,-0.90309,-3.07647	0/1:100:33,67:33:1180:67:2404:-36.0775,0,-3.42204	0/1:38:19,19:19:684:19:684:-7.09806,0,-7.45915	0/0:224:224,0:224:8011:0:0:0,-67.4307,-223.769	0/0:67:67,0:67:2412:0:0:0,-20.169,-65.6446	0/0:74:74,0:74:2635:0:0:0,-22.2762,-73.0001	0/1:139:57,82:57:2044:82:2936:-36.7539,0,-14.0894	0/0:114:114,0:114:4087:0:0:0,-34.3174,-114.813	0/0:142:142,0:142:5096:0:0:0,-42.7463,-143.023	0/0:60:60,0:60:2143:0:0:0,-18.0618,-61.5044	0/1:102:61,40:61:2188:40:1432:-5.82758,0,-29.4735	0/0:42:42,0:42:1512:0:0:0,-12.6433,-41.3722	0/0:6:6,0:6:216:0:0:0,-1.80618,-5.95165	0/1:81:29,52:29:1044:52:1872:-27.1474,0,-4.40349	0/0:33:33,0:33:1180:0:0:0,-9.93399,-32.4688	0/0:2:2,0:2:72:0:0:0,-0.60206,-2.0876	0/1:110:48,62:48:1728:62:2216:-27.8501,0,-14.5519	0/1:46:19,27:19:684:27:972:-10.6188,0,-5.23123	0/1:12:4,8:4:144:8:288:-3.68048,0,-0.452969	0/0:10:10,0:10:352:0:0:0,-3.0103,-9.99505	0/0:43:43,0:43:1540:0:0:0,-12.9443,-42.538	0/1:103:50,53:50:1796:53:1900:-16.7444,0,-18.0056	0/0:4:4,0:4:144:0:0:0,-1.20412,-4.06533	0/0:93:93,0:93:3319:0:0:0,-27.9958,-95.3238	0/0:142:138,4:138:4939:4:144:0,-39.0499,-131.874	0/0:45:45,0:45:1599:0:0:0,-13.5463,-44.597	0/0:91:91,0:91:3248:0:0:0,-27.3937,-90.5726	0/0:124:119,5:119:4222:5:180:0,-32.6405,-114.834	1/1:134:38,96:38:1364:96:3425:-49.9563,-3.1027,0	0/0:49:49,0:49:1760:0:0:0,-14.7505,-48.5625	0/0:67:66,1:66:2351:1:36:0,-19.0703,-64.7052	0/1:48:20,28:20:716:28:999:-10.8197,0,-6.67418	0/0:20:20,0:20:720:0:0:0,-6.0206,-19.8871	0/0:105:105,0:105:3772:0:0:0,-31.6081,-104.117	0/0:117:117,0:117:4186:0:0:0,-35.2205,-117.372	0/0:114:114,0:114:4100:0:0:0,-34.3174,-116.696	0/0:112:112,0:112:4020:0:0:0,-33.7154,-110.229	0/1:101:61,40:61:2162:40:1425:-8.96423,0,-32.1455	0/1:76:42,34:42:1508:34:1224:-10.853,0,-20.6792	0/1:15:9,6:9:320:6:216:-1.52761,0,-4.49247	0/0:53:53,0:53:1880:0:0:0,-15.9546,-53.5678	0/0:61:61,0:61:2184:0:0:0,-18.3628,-60.5152	0/0:152:152,0:152:5448:0:0:0,-45.7566,-151.884	0/0:55:55,0:55:1976:0:0:0,-16.5566,-54.3158	0/1:74:39,35:39:1404:35:1238:-9.27255,0,-18.3853	0/1:45:18,27:18:648:27:968:-11.2786,0,-4.18247	0/1:157:90,67:90:3236:67:2408:-15.4222,0,-42.7234	0/0:36:36,0:36:1296:0:0:0,-10.8371,-35.709	0/0:60:60,0:60:2156:0:0:0,-18.0618,-59.44	0/0:82:82,0:82:2936:0:0:0,-24.6845,-81.5486	0/1:43:17,26:17:612:26:936:-12.6958,0,-4.06654	0/1:94:40,54:40:1432:54:1936:-24.8484,0,-11.3642	0/1:81:29,52:29:1036:52:1860:-22.6461,0,-4.39999	0/0:138:137,0:137:4924:0:0:0,-41.2411,-135.201	0/0:104:104,0:104:3723:0:0:0,-31.3071,-102.849
chr03	7967448	.	T	C	16424	PASS	AB=0.518954;ABP=8.85461;AC=32;AF=0.172043;AN=186;AO=978;CIGAR=1X;DP=5057;DPB=5057;DPRA=1.13623;EPP=2126.71;EPPR=8743.55;GTI=0;LEN=1;MEANALT=1.02632;MQM=59.7822;MQMR=59.8489;NS=93;NUMALT=1;ODDS=0.760309;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34991;QR=145906;RO=4077;RPL=0;RPP=2126.71;RPPR=8743.55;RPR=978;RUN=1;SAF=978;SAP=2126.71;SAR=0;SRF=4077;SRP=8856.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:2,6:2:72:6:216:-17.3785,0,-4.42848	0/1:79:39,40:39:1404:40:1428:-105.029,0,-102.868	0/1:49:19,29:19:669:29:1040:-79.1046,0,-45.7254	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.74	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:81:39,42:39:1377:42:1512:-111.988,0,-99.8319	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.616	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.021	0/0:50:49,1:49:1751:1:36:0,-11.4532,-154.274	0/1:48:24,24:24:860:24:864:-63.6331,0,-63.2724	0/1:43:22,21:22:792:21:752:-55.062,0,-58.658	0/0:64:63,1:63:2264:1:36:0,-15.6676,-200.421	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:53:52,1:52:1864:1:36:0,-12.3563,-164.434	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.656	0/0:114:114,0:114:4088:0:0:0,-34.3174,-368.104	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:58:23,35:23:828:35:1252:-95.5139,0,-57.368	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/1:144:78,66:78:2796:66:2352:-168.58,0,-208.507	0/0:106:106,0:106:3803:0:0:0,-31.9092,-342.427	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:135:71,64:71:2525:64:2296:-166.254,0,-186.68	0/0:76:75,1:75:2696:1:36:0,-19.28,-239.286	0/0:60:60,0:60:2121:0:0:0,-18.0618,-191.121	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:161:161,0:161:5779:0:0:0,-48.4658,-520.171	0/0:93:92,0:92:3300:0:0:0,-27.6948,-297.007	0/1:55:24,31:24:860:31:1108:-83.4676,0,-61.1585	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:55:36,19:36:1277:19:676:-44.6113,0,-98.6711	0/1:26:12,14:12:432:14:500:-37.5078,0,-31.3944	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/0:49:49,0:49:1740:0:0:0,-14.7505,-156.882	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.74	0/1:48:23,25:23:828:25:896:-66.5027,0,-60.3861	0/0:52:51,1:51:1802:1:36:0,-12.059,-158.86	0/0:90:90,0:90:3207:0:0:0,-27.0927,-288.853	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:58:24,34:24:860:34:1224:-93.0042,0,-60.2621	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.906	.:.:.:.:.:.:.:.	0/1:83:45,38:45:1620:38:1364:-98.0685,0,-121.101	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.264	0/1:67:37,30:37:1328:30:1076:-76.9838,0,-99.6532	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2509	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:99:51,48:51:1827:48:1724:-125.642,0,-134.908	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.042	0/0:64:64,0:64:2289:0:0:0,-19.2659,-206.214	0/0:56:55,1:55:1972:1:36:0,-13.2594,-174.157	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:77:77,0:77:2749:0:0:0,-23.1793,-247.651	0/1:71:20,51:20:697:51:1836:-144.143,0,-41.6775	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7669	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.202	0/1:70:33,37:33:1179:37:1328:-98.7501,0,-85.3288	0/0:15:15,0:15:521:0:0:0,-4.51545,-46.9441	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.702	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1254	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.116	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.407	0/1:53:25,28:25:896:28:985:-72.9978,0,-65.0058	0/1:69:33,36:33:1184:36:1271:-93.9152,0,-86.0906	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.985	0/0:121:121,0:121:4328:0:0:0,-36.4246,-389.693	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/1:53:24,29:24:864:29:1040:-77.9567,0,-62.1271	0/1:37:18,19:18:648:19:675:-49.9388,0,-47.5138	0/1:123:57,66:57:2044:66:2360:-175.624,0,-147.205	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.011	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.336	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.464	0/1:59:32,27:32:1144:27:964:-69.3145,0,-85.5078	0/1:113:54,59:54:1940:59:2108:-155.954,0,-140.702	0/1:52:14,38:14:500:38:1352:-106.325,0,-29.6826	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.415
chr03	7967653	.	T	C	25206.5	PASS	AB=0.525773;ABP=19.2404;AC=31;AF=0.168478;AN=184;AO=1500;CIGAR=1X;DP=8217;DPB=8217;DPRA=1.16192;EPP=3260.22;EPPR=14558.4;GTI=0;LEN=1;MEANALT=1.04545;MQM=59.7653;MQMR=59.9647;NS=92;NUMALT=1;ODDS=3.24418;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53506;QR=240255;RO=6715;RPL=0;RPP=3260.22;RPPR=14558.4;RPR=1500;RUN=1;SAF=1500;SAP=3260.22;SAR=0;SRF=6715;SRP=14584.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:23,32:23:819:32:1148:-87.0487,0,-57.4749	0/1:79:34,44:34:1224:44:1568:-117.568,0,-86.6269	0/1:114:55,59:55:1976:59:2106:-155.478,0,-143.797	0/0:251:251,0:251:8977:0:0:0,-75.5585,-807.91	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.558	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:137:73,64:73:2608:64:2263:-162.671,0,-193.727	0/0:133:133,0:133:4752:0:0:0,-40.037,-427.8	0/0:87:87,0:87:3100:0:0:0,-26.1896,-279.229	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.631	0/1:114:64,50:64:2300:50:1776:-125.806,0,-172.94	0/1:101:45,56:45:1608:56:2016:-151.301,0,-114.606	0/0:63:62,1:62:2232:1:36:0,-15.3717,-197.528	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:131:130,1:130:4632:1:36:0,-35.8367,-413.446	0/0:182:182,0:182:6511:0:0:0,-54.7875,-586.074	0/1:86:27,58:27:972:58:2069:-160.532,0,-61.8505	0/0:87:85,2:85:3036:2:68:0,-19.7319,-267.013	0/0:111:111,0:111:3949:0:0:0,-33.4143,-355.598	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.945	0/1:241:121,120:121:4329:120:4280:-312.827,0,-317.236	0/0:182:182,0:182:6500:0:0:0,-54.7875,-585.083	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:191:88,103:88:3141:103:3655:-271.655,0,-225.418	0/0:108:106,2:106:3800:2:72:0,-25.6745,-335.361	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:173:173,0:173:6216:0:0:0,-52.0782,-559.533	0/0:82:80,2:80:2876:2:68:0,-18.2268,-252.618	0/1:32:12,20:12:432:20:719:-55.241,0,-29.5882	.:.:.:.:.:.:.:.	0/1:141:70,71:70:2497:71:2529:-185.406,0,-182.533	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/0:156:156,0:156:5544:0:0:0,-46.9607,-499.087	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	0/1:92:55,37:55:1943:37:1313:-90.7456,0,-147.451	0/0:174:174,0:174:6227:0:0:0,-52.3792,-560.525	0/0:195:195,0:195:6967:0:0:0,-58.7008,-627.091	0/0:105:105,0:105:3759:0:0:0,-31.6081,-338.509	0/1:116:58,58:58:2072:58:2072:-151.822,0,-151.831	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:128:49,79:49:1752:79:2813:-214.864,0,-119.431	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:147:73,74:73:2620:74:2648:-194.283,0,-191.796	0/1:88:46,42:46:1648:42:1472:-106.263,0,-122.118	0/1:7:6,1:6:216:1:36:-1.49006,0,-17.6833	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.929	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:76:48,28:48:1724:28:1008:-68.1581,0,-132.567	.:.:.:.:.:.:.:.	0/0:136:136,0:136:4847:0:0:0,-40.9401,-436.385	0/0:140:138,2:138:4956:2:72:0,-35.3075,-439.346	0/0:57:53,4:53:1891:4:144:0,-3.84509,-157.154	0/0:95:94,1:94:3364:1:36:0,-24.9996,-299.378	0/0:138:138,0:138:4925:0:0:0,-41.5421,-443.401	0/1:138:48,90:48:1720:90:3228:-249.197,0,-113.543	0/0:31:30,1:30:1076:1:36:0,-5.73365,-93.5546	0/0:70:70,0:70:2511:0:0:0,-21.0721,-226.241	0/1:48:25,23:25:892:23:828:-60.3947,0,-66.1502	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/0:89:89,0:89:3144:0:0:0,-26.7917,-283.186	0/0:191:191,0:191:6809:0:0:0,-57.4967,-612.751	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.085	0/1:92:52,40:52:1868:40:1417:-99.9396,0,-140.705	0/1:117:53,64:53:1908:64:2254:-167.9,0,-136.777	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/0:102:101,1:101:3616:1:36:0,-27.1068,-321.858	0/0:142:141,1:141:5060:1:36:0,-39.157,-451.885	0/0:246:245,1:245:8743:1:36:0,-70.4551,-783.265	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:71:25,46:25:892:46:1652:-127.507,0,-59.2266	0/1:58:27,31:27:968:31:1112:-82.8453,0,-69.9776	0/1:117:61,56:61:2192:56:2008:-145.766,0,-162.325	0/0:25:25,0:25:900:0:0:0,-7.52575,-80.6184	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/0:73:73,0:73:2620:0:0:0,-21.9752,-235.42	0/1:43:20,23:20:720:23:828:-61.8998,0,-52.1836	0/1:64:27,37:27:964:37:1328:-100.555,0,-67.8109	0/1:75:27,48:27:964:48:1712:-131.784,0,-64.4996	0/0:141:139,2:139:4970:2:72:0,-35.611,-440.614	0/0:127:127,0:127:4559:0:0:0,-38.2308,-410.474
chr03	8009249	.	A	T	16382.8	PASS	AB=0.492818;ABP=3.91481;AC=33;AF=0.177419;AN=186;AO=1000;CIGAR=1X;DP=5746;DPB=5746;DPRA=1.03533;EPP=2174.48;EPPR=10269.7;GTI=2;LEN=1;MEANALT=1.05405;MQM=53.85;MQMR=59.5487;NS=93;NUMALT=1;ODDS=1.31821;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35598;QR=169713;RO=4740;RPL=999;RPP=2165.81;RPPR=10209.1;RPR=1;RUN=1;SAF=999;SAP=2165.81;SAR=1;SRF=4733;SRP=10235.1;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:25,25:25:892:25:896:-65.7093,0,-65.5296	0/1:33:19,14:19:684:14:500:-35.1093,0,-51.9563	0/1:101:54,47:54:1936:47:1639:-116.344,0,-143.834	0/0:101:101,0:101:3620:0:0:0,-30.404,-325.887	0/0:54:53,1:53:1904:1:36:0,-12.6624,-167.966	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.956	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.864	0/1:114:59,55:59:2116:55:1965:-142.069,0,-156.375	0/0:74:73,0:73:2615:0:0:0,-21.9752,-235.04	0/0:60:60,0:60:2144:0:0:0,-18.0618,-192.849	0/0:44:43,0:43:1544:0:0:0,-12.9443,-138.886	0/1:109:57,52:57:2028:52:1851:-132.493,0,-149.775	0/1:56:25,31:25:892:31:1100:-82.0256,0,-63.742	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.068	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.889	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.473	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.253	0/0:105:104,1:104:3704:1:36:0,-28.0125,-329.956	0/0:122:122,0:122:4372:0:0:0,-36.7257,-392.726	0/1:75:24,50:24:856:50:1784:-138.052,0,-54.7244	0/0:104:104,0:104:3707:0:0:0,-31.3071,-333.823	0/0:37:37,0:37:1314:0:0:0,-11.1381,-118.532	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.97	0/1:129:63,65:63:2264:65:2310:-169.126,0,-165.139	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.679	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5086	0/1:125:60,65:60:2140:65:2318:-170.893,0,-155.231	0/0:75:73,2:73:2619:2:72:0,-15.7502,-229.111	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.962	0/1:5:1,4:1:36:4:140:-11.2936,0,-2.09312	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:3:2,1:2:72:1:21:-1.19657,0,-5.93363	0/0:168:167,0:167:5954:0:0:0,-50.272,-535.618	0/0:102:102,0:102:3655:0:0:0,-30.7051,-329.099	0/1:39:14,25:14:504:25:870:-66.3532,0,-33.9579	.:.:.:.:.:.:.:.	0/1:77:33,44:33:1188:44:1580:-118.979,0,-84.0493	0/1:29:11,18:11:396:18:648:-49.8353,0,-27.24	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.831	0/0:60:60,0:60:2131:0:0:0,-18.0618,-192.048	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.886	0/1:56:39,17:39:1400:17:612:-38.3919,0,-109.438	0/0:81:80,1:80:2872:1:36:0,-20.9958,-255.296	0/0:114:114,0:114:4071:0:0:0,-34.3174,-366.556	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.367	0/1:78:40,38:40:1421:38:1356:-98.5999,0,-104.693	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.903	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:65:40,25:40:1432:25:868:-58.5516,0,-109.586	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.765	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0558	0/1:93:43,50:43:1544:50:1785:-132.438,0,-111.251	0/1:32:16,16:16:576:16:576:-42.5044,0,-42.5411	0/1:3:2,1:2:72:1:36:-2.69418,0,-5.93363	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6573	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.052	0/1:108:66,42:66:2368:42:1501:-102.68,0,-180.866	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.01	0/0:154:154,0:154:5523:0:0:0,-46.3586,-497.172	0/1:44:40,4:40:1440:4:144:-0.0494192,0,-116.648	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.29	0/0:135:135,0:135:4835:0:0:0,-40.639,-434.897	0/1:66:27,39:27:972:39:1391:-105.446,0,-67.9267	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.143	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5376	0/1:30:16,14:16:576:14:500:-36.291,0,-43.1432	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1743	0/0:77:77,0:77:2768:0:0:0,-23.1793,-248.752	0/0:99:98,0:98:3512:0:0:0,-29.5009,-315.904	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.556	0/1:64:44,20:44:1571:20:716:-45.3351,0,-122.379	0/1:66:35,31:35:1252:31:1096:-78.3899,0,-93.1138	0/1:5:4,1:4:144:1:36:-2.08408,0,-11.8085	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.94	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.213	0/0:132:132,0:132:4727:0:0:0,-39.736,-425.51	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.126	0/1:69:35,34:35:1252:34:1215:-88.507,0,-91.9415	0/1:44:18,26:18:636:26:928:-70.3402,0,-44.3007	0/1:105:56,49:56:1986:49:1755:-125.801,0,-147.385	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5975	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.858	0/0:87:87,0:87:3112:0:0:0,-26.1896,-279.536	0/1:13:6,7:6:212:7:248:-18.7159,0,-15.3777	0/1:54:24,30:24:860:30:1072:-80.4005,0,-61.449	0/1:79:24,55:24:860:55:1961:-152.516,0,-53.9311	0/0:101:101,0:101:3619:0:0:0,-30.404,-325.87	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.353
chr03	8010893	.	C	T	177149	PASS	AB=0.416179;ABP=232.35;AC=149;AF=0.809783;AN=184;AO=8187;CIGAR=1X;DP=10630;DPB=10630;DPRA=23.3516;EPP=17780.9;EPPR=5305.75;GTI=2;LEN=1;MEANALT=1.01099;MQM=59.8098;MQMR=59.984;NS=92;NUMALT=1;ODDS=0.567753;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293009;QR=87382;RO=2442;RPL=8187;RPP=17780.9;RPPR=5305.75;RPR=0;RUN=1;SAF=0;SAP=17780.9;SAR=8187;SRF=0;SRP=5305.75;SRR=2442;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:107:73,34:73:2612:34:1208:-76.8159,0,-203.118	0/1:133:57,76:57:2044:76:2693:-202.572,0,-144.195	0/1:192:115,77:115:4112:77:2748:-189.76,0,-312.468	1/1:259:0,259:0:0:259:9260:-833.362,-77.9668,0	1/1:140:0,140:0:0:140:5012:-451.181,-42.1442,0	1/1:114:0,114:0:0:114:4071:-366.572,-34.3174,0	1/1:147:0,147:0:0:147:5238:-470.697,-44.2514,0	0/1:229:124,105:124:4444:105:3764:-269.794,0,-331.065	1/1:173:0,173:0:0:173:6198:-557.849,-52.0782,0	1/1:101:0,101:0:0:101:3616:-325.644,-30.404,0	1/1:41:0,41:0:0:41:1476:-133.134,-12.3422,0	0/1:101:56,45:56:2012:45:1616:-115.324,0,-150.949	0/1:93:44,49:44:1571:49:1748:-129.607,0,-113.685	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:71:0,71:0:0:71:2537:-228.554,-21.3731,0	1/1:58:1,57:1:36:57:2044:-180.633,-13.8615,0	1/1:31:0,31:0:0:31:1111:-100.301,-9.33193,0	1/1:32:0,32:0:0:32:1152:-103.988,-9.63296,0	1/1:26:0,26:0:0:26:936:-84.5418,-7.82678,0	1/1:198:0,198:0:0:198:7056:-634.643,-59.6039,0	1/1:89:0,89:0:0:89:3167:-285.254,-26.7917,0	0/1:138:96,42:96:3433:42:1508:-94.4701,0,-267.64	1/1:177:0,177:0:0:177:6333:-569.86,-53.2823,0	1/1:95:0,95:0:0:95:3378:-304.233,-28.5979,0	1/1:181:0,181:0:0:181:6475:-582.803,-54.4864,0	0/1:361:235,126:235:8428:126:4513:-297.66,0,-649.849	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:29:0,29:0:0:29:1040:-93.9104,-8.72987,0	0/0:156:152,4:152:5439:4:144:0,-33.6471,-476.325	1/1:132:8,124:8:288:124:4440:-373.496,-13.4686,0	1/1:185:0,185:0:0:185:6607:-594.269,-55.6906,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:41:18,23:18:644:23:824:-62.1393,0,-45.9484	1/1:236:0,236:0:0:236:8434:-759.032,-71.0431,0	1/1:114:1,113:1:36:113:4033:-359.549,-30.7191,0	0/1:57:25,32:25:887:32:1148:-86.3961,0,-62.9894	.:.:.:.:.:.:.:.	0/1:160:96,64:96:3417:64:2296:-158.731,0,-259.577	0/1:46:22,24:22:792:24:860:-63.8729,0,-57.7583	1/1:302:0,302:0:0:302:10819:-973.507,-90.9111,0	1/1:79:0,79:0:0:79:2825:-254.481,-23.7814,0	1/1:68:0,68:0:0:68:2444:-220.212,-20.47,0	0/1:190:120,70:120:4296:70:2512:-169.132,0,-329.621	1/1:186:0,186:0:0:186:6688:-601.985,-55.9916,0	1/1:254:0,254:0:0:254:9115:-819.798,-76.4616,0	1/1:159:2,157:2:72:157:5632:-500.147,-41.027,0	0/1:180:87,93:87:3108:93:3344:-246.981,0,-225.762	1/1:86:0,86:0:0:86:3088:-278.14,-25.8886,0	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	0/1:204:107,96:107:3827:96:3456:-249.78,0,-283.158	1/1:61:0,61:0:0:61:2177:-196.179,-18.3628,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:246:178,68:178:6368:68:2444:-145.844,0,-499.157	0/1:89:48,41:48:1724:41:1472:-105.98,0,-128.654	0/1:20:13,7:13:464:7:252:-17.006,0,-36.0769	1/1:16:0,16:0:0:16:576:-52.1726,-4.81648,0	1/1:151:0,151:0:0:151:5407:-486.696,-45.4555,0	0/1:120:60,60:60:2147:60:2156:-158.179,0,-157.373	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:284:2,282:2:72:282:10101:-902.157,-78.6558,0	1/1:52:2,50:2:68:50:1792:-155.105,-9.19585,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:205:0,205:0:0:205:7314:-658.166,-61.7112,0	0/1:254:182,72:182:6520:72:2576:-155.592,0,-510.421	1/1:38:0,38:0:0:38:1364:-123.051,-11.4391,0	1/1:77:0,77:0:0:77:2752:-247.805,-23.1793,0	0/1:47:17,30:17:608:30:1069:-82.3705,0,-40.9036	.:.:.:.:.:.:.:.	1/1:168:0,168:0:0:168:6009:-540.907,-50.573,0	1/1:100:1,99:1:36:99:3552:-316.284,-26.5047,0	1/1:224:0,224:0:0:224:7997:-719.745,-67.4307,0	1/1:96:0,96:0:0:96:3444:-310.168,-28.8989,0	0/1:234:137,97:137:4901:97:3453:-240.537,0,-370.799	0/0:79:73,6:73:2607:6:216:0,-3.99086,-215.086	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:154:0,154:0:0:154:5508:-495.837,-46.3586,0	1/1:117:0,117:0:0:117:4200:-377.857,-35.2205,0	1/1:354:1,353:1:36:353:12654:-1135.01,-102.966,0	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	0/1:78:41,37:41:1472:37:1332:-96.7016,0,-109.296	0/1:56:25,31:25:887:31:1112:-83.5337,0,-63.2904	0/1:125:61,64:61:2188:64:2296:-169.272,0,-159.557	1/1:14:0,14:0:0:14:496:-44.9733,-4.21442,0	1/1:66:0,66:0:0:66:2352:-211.939,-19.868,0	1/1:82:0,82:0:0:82:2925:-263.425,-24.6845,0	0/1:59:34,25:34:1215:25:887:-62.3818,0,-91.895	0/1:119:65,54:65:2324:54:1944:-139.412,0,-173.598	0/1:71:51,20:51:1815:20:708:-42.6703,0,-142.258	1/1:215:0,215:0:0:215:7681:-691.171,-64.7215,0	1/1:138:1,137:1:36:137:4916:-438.811,-37.9439,0
chr03	8187724	.	ACCT	GCCC,GCCT	155905	PASS	AB=0.441792,0.553066;ABP=83.1458,69.6146;AC=151,35;AF=0.811828,0.188172;AN=186;AO=4878,1523;CIGAR=1X2M1X,1X3M;DP=6433;DPB=6768.5;DPRA=11.7601,1.34524;EPP=10586.8,3301.48;EPPR=13.8677;GTI=6;LEN=4,1;MEANALT=1.63736,2.22222;MQM=59.9608,59.9967;MQMR=60;NS=93;NUMALT=2;ODDS=0.493635;PAIRED=0,0;PAIREDR=0;PAO=447.333,447.333;PQA=15556.3,15556.3;PQR=0;PRO=0;QA=169253,53995;QR=179;RO=5;RPL=483,593;RPP=6815.57,164.935;RPPR=13.8677;RPR=4395,930;RUN=1,1;SAF=482,592;SAP=6822.54,166.863;SAR=4396,931;SRF=0;SRP=13.8677;SRR=5;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:11:0,6,5:0:0:6,5:214,172:-30.2814,-13.0073,-11.2012,-16.4418,0,-14.9366	1/2:83:0,57,26:0:0:57,26:1983,928:-235.211,-74.0365,-56.8778,-159.565,0,-151.738	1/2:89:0,47,42:0:0:47,42:1655,1504:-254.574,-119.882,-105.733,-131.95,0,-119.307	1/1:116:0,115,0:0:0:115,0:4017,0:-361.267,-34.6185,0,-361.267,-34.6185,-361.267	1/1:13:0,13,0:0:0:13,0:449,0:-40.4945,-3.91339,0,-40.4945,-3.91339,-40.4945	1/1:18:0,18,0:0:0:18,0:636,0:-56.4723,-5.41854,0,-56.4723,-5.41854,-56.4723	1/1:45:0,45,0:0:0:45,0:1579,0:-142.398,-13.5464,0,-142.398,-13.5464,-142.398	1/2:85:0,52,33:0:0:52,33:1800,1172:-238.376,-92.1739,-76.5203,-142.903,0,-132.969	1/1:33:0,33,0:0:0:33,0:1139,0:-98.6675,-9.93399,0,-98.6675,-9.93399,-98.6675	1/1:78:0,78,0:0:0:78,0:2707,0:-243.874,-23.4803,0,-243.874,-23.4803,-243.874	1/1:74:0,73,0:0:0:73,0:2514,0:-226.064,-21.9752,0,-226.064,-21.9752,-226.064	1/2:69:0,32,37:0:0:32,37:1092,1312:-191.682,-103.133,-93.5002,-84.8569,0,-73.7188	1/2:72:0,36,36:0:0:36,36:1264,1288:-205.03,-102.206,-91.3688,-100.043,0,-89.206	1/1:92:0,92,0:0:0:92,0:3185,0:-286.823,-27.6948,0,-286.823,-27.6948,-286.823	1/1:55:0,53,0:0:0:53,0:1861,0:-167.518,-15.9546,0,-167.518,-15.9546,-167.518	1/1:62:0,62,0:0:0:62,0:2166,0:-194.739,-18.6639,0,-194.739,-18.6639,-194.739	1/1:81:0,81,0:0:0:81,0:2796,0:-250.837,-24.3834,0,-250.837,-24.3834,-250.837	1/1:49:0,49,0:0:0:49,0:1725,0:-153.725,-14.7505,0,-153.725,-14.7505,-153.725	1/1:39:0,39,0:0:0:39,0:1376,0:-121.918,-11.7402,0,-121.918,-11.7402,-121.918	1/1:54:0,54,0:0:0:54,0:1902,0:-171.456,-16.2556,0,-171.456,-16.2556,-171.456	1/1:91:0,89,1:0:0:89,1:3070,36:-275.973,-26.7917,0,-273.035,-24.0549,-272.734	1/2:40:0,13,27:0:0:13,27:442,957:-114.164,-78.3174,-74.404,-36.1915,0,-28.0637	1/1:53:0,53,0:0:0:53,0:1822,0:-164.255,-15.9546,0,-164.255,-15.9546,-164.255	1/1:84:0,83,0:0:0:83,0:2875,0:-258.522,-24.9855,0,-258.522,-24.9855,-258.522	1/1:34:0,34,0:0:0:34,0:1207,0:-108.628,-10.235,0,-108.628,-10.235,-108.628	1/2:227:0,106,120:0:0:106,120:3639,4299:-646.172,-350.711,-318.802,-295.559,0,-259.436	1/1:123:0,123,0:0:0:123,0:4332,0:-389.064,-37.0267,0,-389.064,-37.0267,-389.064	1/1:28:0,28,0:0:0:28,0:965,0:-86.9035,-8.42884,0,-86.9035,-8.42884,-86.9035	1/2:201:2,88,111:2:72:88,111:3066,3887:-558.89,-310.35,-289.735,-243.23,0,-215.691	1/1:61:0,61,0:0:0:61,0:2132,0:-191.834,-18.3628,0,-191.834,-18.3628,-191.834	1/1:46:0,46,0:0:0:46,0:1591,0:-143.371,-13.8474,0,-143.371,-13.8474,-143.371	2/2:6:0,0,6:0:0:0,6:0,208:-19.0151,-19.0151,-19.0151,-1.80618,-1.80618,0	1/1:7:0,4,0:0:0:4,0:137,0:-12.3172,-1.20412,0,-12.3172,-1.20412,-12.3172	1/1:1:0,1,0:0:0:1,0:33,0:-3.29913,-0.30103,0,-3.29913,-0.30103,-3.29913	1/1:5:0,5,0:0:0:5,0:169,0:-15.3725,-1.50515,0,-15.3725,-1.50515,-15.3725	1/2:2:0,1,1:0:0:1,1:36,36:-6.07751,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:321:0,319,0:0:0:319,0:10955,0:-985.471,-96.0286,0,-985.471,-96.0286,-985.471	1/1:60:0,60,0:0:0:60,0:2092,0:-188.188,-18.0618,0,-188.188,-18.0618,-188.188	1/2:50:0,29,21:0:0:29,21:1011,738:-140.627,-58.4633,-49.7334,-80.5871,0,-74.2655	1/1:2:0,2,0:0:0:2,0:69,0:-6.55254,-0.60206,0,-6.55254,-0.60206,-6.55254	1/2:140:0,41,99:0:0:41,99:1435,3502:-401.558,-284.809,-272.467,-116.332,0,-86.53	1/2:36:0,17,19:0:0:17,19:588,680:-103.431,-55.6595,-50.542,-47.9775,0,-42.258	1/1:21:0,21,0:0:0:21,0:732,0:-65.647,-6.32163,0,-65.647,-6.32163,-65.647	1/1:81:1,80,0:1:35:80,0:2710,0:-240.538,-20.8848,0,-240.839,-24.0824,-243.687	1/1:58:0,58,0:0:0:58,0:1974,0:-177.826,-17.4597,0,-177.826,-17.4597,-177.826	1/2:108:0,51,56:0:0:51,56:1755,1989:-304.548,-162.021,-146.669,-142.472,0,-125.615	1/1:35:0,35,0:0:0:35,0:1209,0:-106.7,-10.5361,0,-106.7,-10.5361,-106.7	1/1:51:0,51,0:0:0:51,0:1784,0:-160.787,-15.3525,0,-160.787,-15.3525,-160.787	1/1:79:0,78,0:0:0:78,0:2719,0:-244.594,-23.4803,0,-244.594,-23.4803,-244.594	1/2:102:0,51,51:0:0:51,51:1790,1792:-291.884,-146.207,-130.855,-146.028,0,-130.675	1/1:135:0,134,0:0:0:134,0:4698,0:-422.577,-40.338,0,-422.577,-40.338,-422.577	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:69:0,46,22:0:0:46,22:1614,788:-190.611,-59.4148,-45.5674,-126.383,0,-119.76	1/1:45:0,45,0:0:0:45,0:1572,0:-141.717,-13.5464,0,-141.717,-13.5464,-141.717	1/1:9:0,9,0:0:0:9,0:322,0:-29.3242,-2.70927,0,-29.3242,-2.70927,-29.3242	1/2:93:0,33,60:0:0:33,60:1151,2133:-267.367,-173.759,-163.825,-93.5518,0,-75.49	1/2:27:0,8,19:0:0:8,19:283,680:-78.8083,-55.7596,-53.3513,-23.3581,0,-17.6386	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chr03	8414045	.	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chr03	8630273	.	C	T	50133.2	PASS	AB=0.480442;ABP=21.9517;AC=32;AF=0.170213;AN=188;AO=2764;CIGAR=1X;DP=18293;DPB=18293;DPRA=1.79959;EPP=4960.43;EPPR=27389.2;GTI=0;LEN=1;MEANALT=1.1087;MQM=59.9787;MQMR=59.9724;NS=94;NUMALT=1;ODDS=30.9715;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98934;QR=555966;RO=15521;RPL=126;RPP=4960.43;RPPR=27389.2;RPR=2638;RUN=1;SAF=2764;SAP=6004.96;SAR=0;SRF=15521;SRP=33706.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:12,18:12:428:18:648:-49.621,0,-29.8279	0/1:192:98,94:98:3508:94:3372:-245.898,0,-258.063	0/1:83:53,30:53:1908:30:1065:-71.1743,0,-147.012	0/0:189:189,0:189:6776:0:0:0,-56.8947,-609.911	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.323	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.889	0/1:157:90,67:90:3232:67:2379:-167.104,0,-243.804	0/0:104:103,1:103:3692:1:36:0,-27.7088,-328.884	0/0:76:76,0:76:2705:0:0:0,-22.8783,-243.693	0/0:139:139,0:139:4974:0:0:0,-41.8432,-447.807	0/1:74:36,38:36:1292:38:1360:-100.424,0,-94.3075	0/1:52:25,27:25:888:27:972:-72.1443,0,-64.5855	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:138:137,1:137:4889:1:36:0,-37.9439,-436.564	0/0:175:175,0:175:6284:0:0:0,-52.6802,-565.646	0/0:119:119,0:119:4260:0:0:0,-35.8226,-383.579	0/1:118:35,83:35:1256:83:2964:-231.472,0,-77.8237	0/0:144:144,0:144:5172:0:0:0,-43.3483,-465.614	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.285	0/1:318:172,146:172:6156:146:5238:-375.821,0,-458.284	0/0:272:272,0:272:9761:0:0:0,-81.8802,-878.432	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:189:101,88:101:3632:88:3144:-226.289,0,-270.189	0/0:160:155,5:155:5557:5:180:0,-31.6127,-483.699	0/0:159:158,0:158:5646:0:0:0,-47.5627,-507.797	0/1:951:471,480:471:16893:480:17187:-1260.15,0,-1233.73	0/0:834:830,3:830:29809:3:108:0,-241.043,-2671.68	0/0:982:982,0:982:35166:0:0:0,-295.611,-3163.8	0/0:1244:1242,1:1242:44452:1:36:0,-370.942,-3995.12	0/1:476:266,210:266:9540:210:7497:-531.463,0,-715.264	0/0:176:175,1:175:6251:1:36:0,-49.383,-559.088	0/0:251:251,0:251:9004:0:0:0,-75.5585,-810.334	0/1:217:122,95:122:4358:95:3390:-239.992,0,-327.071	0/0:597:597,0:597:21418:0:0:0,-179.715,-1927.01	0/1:151:99,52:99:3545:52:1837:-120.153,0,-273.801	0/1:104:56,48:56:1999:48:1720:-123.778,0,-148.876	0/0:163:162,0:162:5789:0:0:0,-48.7669,-520.736	0/0:46:45,1:45:1598:1:36:0,-10.2491,-140.51	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/1:73:40,33:40:1440:33:1172:-83.8123,0,-107.923	0/0:165:164,1:164:5868:1:36:0,-46.0717,-524.633	0/0:225:225,0:225:8041:0:0:0,-67.7317,-723.71	0/0:129:129,0:129:4617:0:0:0,-38.8329,-415.692	0/1:144:69,75:69:2453:75:2692:-199.176,0,-177.675	0/0:182:182,0:182:6513:0:0:0,-54.7875,-586.25	0/0:687:686,1:686:24554:1:36:0,-203.209,-2205.58	0/1:87:45,42:45:1616:42:1512:-110.185,0,-119.54	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:847:844,1:844:30237:1:36:0,-251.125,-2716.82	0/1:126:79,47:79:2831:47:1688:-114.276,0,-216.825	0/1:53:32,21:32:1152:21:741:-51.057,0,-88.0356	0/1:747:365,382:365:13046:382:13678:-1005.93,0,-949.079	0/0:690:688,1:688:24680:1:36:0,-204.171,-2216.88	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:65:30,35:30:1061:35:1237:-92.0653,0,-76.2324	0/0:539:536,3:536:19203:3:108:0,-152.18,-1717.72	0/0:142:142,0:142:5068:0:0:0,-42.7463,-456.264	0/0:248:248,0:248:8904:0:0:0,-74.6554,-801.311	0/0:114:110,4:110:3952:4:144:0,-21.0038,-342.427	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:185:185,0:185:6605:0:0:0,-55.6905,-594.53	0/1:100:51,49:51:1820:49:1756:-128.221,0,-133.978	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.829	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.228	0/1:40:27,13:27:968:13:468:-30.4184,0,-75.3962	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.828	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:47:47,0:47:1677:0:0:0,-14.1484,-151.214	0/0:129:129,0:129:4620:0:0:0,-38.8329,-415.96	0/0:134:133,1:133:4776:1:36:0,-36.7397,-426.397	0/1:113:68,45:68:2436:45:1615:-111.624,0,-185.479	0/1:52:18,34:18:644:34:1224:-94.8135,0,-42.637	0/1:333:150,183:150:5372:183:6580:-492.034,0,-383.357	0/0:125:124,0:124:4448:0:0:0,-37.3277,-400.13	0/0:114:114,0:114:4092:0:0:0,-34.3174,-368.465	0/0:171:171,0:171:6136:0:0:0,-51.4761,-552.338	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	0/1:70:42,28:42:1512:28:1008:-69.9643,0,-115.303	0/1:129:71,58:71:2544:58:2069:-147.646,0,-190.378	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:70:70,0:70:2487:0:0:0,-21.0721,-224.083	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/1:103:54,49:54:1944:49:1763:-127.948,0,-144.23	0/1:281:157,124:157:5623:124:4442:-315.36,0,-421.601	0/1:49:14,35:14:500:35:1256:-98.5948,0,-30.5857	0/0:107:107,0:107:3783:0:0:0,-32.2102,-340.67	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545
chr03	8635236	.	T	C	178452	PASS	AB=0.484331;ABP=11.3803;AC=154;AF=0.827957;AN=186;AO=8278;CIGAR=1X;DP=10319;DPB=10319;DPRA=0;EPP=17891.7;EPPR=4313.9;GTI=3;LEN=1;MEANALT=1.09677;MQM=59.9921;MQMR=59.997;NS=93;NUMALT=1;ODDS=0.377533;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=294412;QR=72643;RO=2029;RPL=8268;RPP=17891.7;RPPR=4322.5;RPR=10;RUN=1;SAF=0;SAP=17978.5;SAR=8278;SRF=1;SRP=4400.25;SRR=2028;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:13,16:13:468:16:572:-43.0836,0,-33.7298	0/1:147:74,73:74:2656:73:2615:-191.346,0,-195.034	0/1:128:54,72:54:1944:72:2569:-193.242,0,-137.019	1/1:142:0,142:0:0:142:5043:-454.015,-42.7463,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	1/1:33:0,33:0:0:33:1165:-105.155,-9.93399,0	1/1:189:0,189:0:0:189:6615:-595.431,-56.8947,0	0/1:180:72,108:72:2554:108:3826:-290.35,0,-175.922	1/1:137:1,136:1:36:136:4843:-432.423,-37.6428,0	1/1:109:0,109:0:0:109:3907:-351.823,-32.8123,0	1/1:190:0,190:0:0:190:6765:-608.919,-57.1957,0	0/1:97:55,42:55:1961:42:1497:-105.823,0,-147.564	0/1:117:58,59:58:2088:59:2109:-154.858,0,-152.969	1/1:181:1,180:1:36:180:6381:-570.778,-50.8882,0	1/1:92:0,92:0:0:92:3266:-294.158,-27.6948,0	1/1:77:0,77:0:0:77:2745:-247.291,-23.1793,0	1/1:129:0,129:0:0:129:4632:-417.041,-38.8329,0	1/1:82:0,82:0:0:82:2951:-265.823,-24.6845,0	1/1:96:0,96:0:0:96:3418:-307.832,-28.8989,0	1/1:96:0,96:0:0:96:3377:-304.145,-28.8989,0	1/1:142:0,142:0:0:142:5050:-454.642,-42.7463,0	0/1:75:57,18:57:2037:18:633:-34.7178,0,-161.023	1/1:88:0,88:0:0:88:3116:-280.662,-26.4906,0	1/1:94:0,94:0:0:94:3346:-301.355,-28.2968,0	1/1:144:0,144:0:0:144:5118:-460.76,-43.3483,0	0/1:357:178,179:178:6340:179:6357:-464.751,0,-463.22	1/1:245:0,244:0:0:244:8670:-780.079,-73.4513,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:185:113,72:113:4059:72:2588:-177.478,0,-309.804	1/1:92:4,87:4:144:87:3086:-264.683,-14.3201,0	1/1:71:0,71:0:0:71:2533:-228.22,-21.3731,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:241:0,241:0:0:241:8564:-770.753,-72.5482,0	1/1:131:0,131:0:0:131:4624:-416.321,-39.4349,0	0/1:145:74,71:74:2660:71:2544:-185.561,0,-195.996	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:83:34,49:34:1224:49:1734:-131.355,0,-85.4816	0/1:96:54,42:54:1944:42:1491:-105.584,0,-146.337	1/1:150:0,150:0:0:150:5323:-479.202,-45.1545,0	1/1:118:0,118:0:0:118:4202:-378.359,-35.5215,0	1/1:78:0,78:0:0:78:2785:-250.889,-23.4803,0	0/1:96:39,57:39:1389:57:2000:-151.366,0,-96.4081	1/1:74:0,74:0:0:74:2637:-237.576,-22.2762,0	1/1:170:0,170:0:0:170:6082:-547.479,-51.1751,0	1/1:119:0,119:0:0:119:4261:-383.667,-35.8226,0	0/1:132:70,62:70:2512:62:2232:-161.408,0,-186.596	1/1:147:0,147:0:0:147:5192:-467.418,-44.2514,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:187:93,94:93:3333:94:3376:-247.762,0,-243.893	1/1:50:1,49:1:36:49:1741:-153.374,-11.4532,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:93:46,47:46:1652:47:1647:-120.516,0,-120.973	0/1:29:14,15:14:485:15:540:-40.2067,0,-35.247	.:.:.:.:.:.:.:.	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:96:0,96:0:0:96:3433:-309.182,-28.8989,0	0/1:178:94,84:94:3384:84:2968:-213.767,0,-251.191	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:105:0,105:0:0:105:3663:-329.869,-31.6082,0	1/1:212:0,212:0:0:212:7536:-678.281,-63.8184,0	0/1:88:9,79:9:324:79:2772:-223.226,0,-3.01521	1/1:61:0,61:0:0:61:2173:-195.835,-18.3628,0	1/1:139:0,139:0:0:139:4913:-442.319,-41.8432,0	0/1:139:92,47:92:3281:47:1673:-109.012,0,-253.666	1/1:105:0,105:0:0:105:3741:-336.888,-31.6082,0	1/1:88:0,88:0:0:88:3126:-281.564,-26.4906,0	0/1:118:47,71:47:1688:71:2529:-192.338,0,-116.685	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:74:1,73:1:36:73:2624:-232.809,-18.6779,0	1/1:99:0,98:0:0:98:3447:-310.079,-29.5009,0	1/1:288:0,288:0:0:288:10214:-919.188,-86.6966,0	1/1:132:0,132:0:0:132:4664:-419.919,-39.736,0	0/1:158:63,95:63:2230:95:3389:-257.662,0,-153.398	0/1:151:90,61:90:3191:61:2179:-150.92,0,-241.955	0/1:10:2,8:2:72:8:279:-22.4372,0,-3.82642	1/1:124:0,124:0:0:124:4369:-393.378,-37.3277,0	1/1:60:0,58:0:0:58:2069:-186.119,-17.4597,0	1/1:241:0,240:0:0:240:8541:-768.475,-72.2472,0	1/1:159:0,159:0:0:159:5693:-512.486,-47.8638,0	0/1:124:70,54:70:2516:54:1940:-137.548,0,-189.364	0/1:110:51,57:51:1836:57:2044:-151.433,0,-132.722	0/1:149:88,61:88:3168:61:2180:-151.611,0,-240.49	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:101:1,100:1:36:100:3573:-318.178,-26.8058,0	1/1:100:0,100:0:0:100:3554:-320.067,-30.103,0	0/1:165:102,63:102:3653:63:2260:-153.993,0,-279.302	0/1:250:137,113:137:4898:113:4018:-286.551,0,-365.711	0/1:96:71,25:71:2556:25:896:-52.0615,0,-201.391	1/1:76:0,76:0:0:76:2701:-243.333,-22.8783,0	1/1:150:0,148:0:0:148:5302:-477.028,-44.5524,0
chr03	8635510	.	C	A	64020.3	PASS	AB=0.497639;ABP=3.2871;AC=32;AF=0.170213;AN=188;AO=2861;CIGAR=1X;DP=15575;DPB=15575;DPRA=1.30454;EPP=6215.59;EPPR=27569.9;GTI=1;LEN=1;MEANALT=1.2093;MQM=59.9472;MQMR=59.9401;NS=94;NUMALT=1;ODDS=2.46141;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100952;QR=446002;RO=12703;RPL=1331;RPP=33.0671;RPPR=70.2124;RPR=1530;RUN=1;SAF=1331;SAP=33.0671;SAR=1530;SRF=6665;SRP=70.2124;SRR=6038;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:87:45,42:45:1595:42:1476:-106.784,0,-117.65	0/1:182:96,85:96:3393:85:3011:-216.377,0,-250.741	0/1:256:138,118:138:4896:118:4162:-297.702,0,-363.238	0/0:303:302,1:302:10623:1:36:0,-87.6138,-952.393	0/0:80:80,0:80:2816:0:0:0,-24.0824,-253.677	0/0:109:109,0:109:3825:0:0:0,-32.8123,-344.417	0/0:137:137,0:137:4828:0:0:0,-41.2411,-434.678	0/1:327:152,174:152:5335:174:6144:-454.566,0,-381.75	0/0:169:169,0:169:5947:0:0:0,-50.8741,-535.325	0/0:152:152,0:152:5334:0:0:0,-45.7566,-480.197	0/0:137:137,0:137:4710:0:0:0,-41.2411,-424.07	0/1:203:113,90:113:3973:90:3162:-223.696,0,-296.654	0/1:145:92,53:92:3169:53:1856:-123.668,0,-241.788	0/0:147:147,0:147:5149:0:0:0,-44.2514,-463.541	0/0:139:139,0:139:4861:0:0:0,-41.8432,-437.02	0/0:126:126,0:126:4302:0:0:0,-37.9298,-387.362	0/0:159:159,0:159:5525:0:0:0,-47.8638,-497.37	0/0:109:109,0:109:3756:0:0:0,-32.8123,-338.242	0/0:88:88,0:88:3113:0:0:0,-26.4906,-280.397	0/0:321:319,1:319:11286:1:24:0,-94.29,-1013.23	0/0:264:264,0:264:9324:0:0:0,-79.4719,-838.521	0/1:102:24,78:24:836:78:2758:-217.757,0,-44.8487	0/0:146:146,0:146:5137:0:0:0,-43.9504,-462.472	0/0:58:58,0:58:2034:0:0:0,-17.4597,-183.319	0/0:118:118,0:118:4152:0:0:0,-35.5215,-373.862	0/1:406:208,198:208:7237:198:7006:-508.388,0,-529.177	0/0:311:310,0:310:10939:0:0:0,-93.3193,-984.051	0/0:73:73,0:73:2568:0:0:0,-21.9752,-231.37	0/1:370:180,190:180:6300:190:6742:-495.476,0,-455.72	0/0:200:196,4:196:6829:4:136:0,-47.6305,-602.113	0/0:186:186,0:186:6522:0:0:0,-55.9916,-587.073	0/1:19:11,8:11:388:8:280:-19.8197,0,-29.5378	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.6947	0/1:18:9,9:9:320:9:316:-23.3603,0,-23.7238	0/0:444:444,0:444:15548:0:0:0,-133.657,-1399.06	0/0:129:129,0:129:4565:0:0:0,-38.8329,-411.012	0/1:128:63,65:63:2190:65:2260:-165.128,0,-158.764	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:280:142,138:142:4924:138:4899:-356.777,0,-359	0/1:69:44,25:44:1545:25:865:-57.3919,0,-118.568	0/0:279:279,0:279:9778:0:0:0,-83.9874,-879.632	0/0:211:211,0:211:7316:0:0:0,-63.5173,-658.499	0/0:173:173,0:173:6023:0:0:0,-52.0782,-542.185	0/1:158:72,86:72:2559:86:3015:-224.017,0,-182.968	0/0:199:199,0:199:7093:0:0:0,-59.905,-638.426	0/0:227:227,0:227:7980:0:0:0,-68.3338,-718.23	0/0:155:155,0:155:5428:0:0:0,-46.6596,-488.656	0/1:225:122,103:122:4318:103:3643:-260.344,0,-321.066	0/0:166:166,0:166:5841:0:0:0,-49.971,-525.804	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:172:92,80:92:3288:80:2837:-203.791,0,-244.363	0/0:116:116,0:116:4088:0:0:0,-34.9195,-368.107	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8446	0/1:253:122,131:122:4289:131:4665:-343.852,0,-310.026	0/1:64:30,34:30:992:34:1195:-88.5886,0,-70.2984	0/1:17:4,13:4:144:13:455:-36.1644,0,-8.19611	0/0:26:26,0:26:899:0:0:0,-7.82678,-81.2204	0/0:132:130,1:130:4562:1:36:0,-36.1965,-407.148	0/1:197:105,91:105:3690:91:3205:-229.313,0,-272.943	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:290:288,1:288:10129:1:36:0,-83.7592,-907.798	0/0:352:350,1:350:12286:1:36:0,-102.423,-1102	0/0:121:119,2:119:4200:2:72:0,-29.5879,-371.342	0/0:153:153,0:153:5427:0:0:0,-46.0576,-488.562	0/0:307:307,0:307:10828:0:0:0,-92.4162,-974.432	0/1:255:84,171:84:2990:171:6047:-467.552,0,-192.569	0/0:94:93,1:93:3224:1:36:0,-24.6985,-286.467	0/0:98:98,0:98:3444:0:0:0,-29.5009,-310.173	0/1:164:103,60:103:3584:60:2110:-140.741,0,-273.342	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0544	0/0:108:108,0:108:3833:0:0:0,-32.5112,-345.162	0/0:106:106,0:106:3753:0:0:0,-31.9092,-337.972	0/0:222:222,0:222:7864:0:0:0,-66.8287,-707.79	0/0:264:263,1:263:9324:1:36:0,-75.8736,-835.533	0/1:117:60,57:60:2090:57:2040:-148.652,0,-153.146	0/1:242:130,112:130:4573:112:3926:-280.678,0,-338.188	0/1:13:6,7:6:212:7:248:-18.7508,0,-15.5114	0/0:231:231,0:231:8154:0:0:0,-69.5379,-733.883	0/0:240:240,0:240:8443:0:0:0,-72.2472,-758.756	0/0:331:330,0:330:11683:0:0:0,-99.3399,-1050.94	0/0:200:199,1:199:6929:1:36:0,-56.6077,-620.09	0/1:164:84,80:84:2944:80:2859:-208.178,0,-215.738	0/1:182:104,78:104:3579:78:2703:-188.713,0,-267.53	0/1:314:169,144:169:5923:144:5109:-365.374,0,-437.33	0/0:80:80,0:80:2797:0:0:0,-24.0824,-251.967	0/0:148:148,0:148:5158:0:0:0,-44.5524,-464.371	0/0:162:161,1:161:5590:1:21:0,-46.6672,-501.132	0/1:119:64,55:64:2235:55:1938:-138.767,0,-165.59	0/1:226:115,111:115:4047:111:3916:-284.603,0,-296.386	0/1:245:85,160:85:3007:160:5599:-430.29,0,-197.108	0/0:167:167,0:167:5868:0:0:0,-50.272,-528.237	0/0:274:274,0:274:9577:0:0:0,-82.4822,-861.902
chr03	8635515	.	C	T	338764	PASS	AB=0.487455;ABP=10.9105;AC=156;AF=0.829787;AN=188;AO=12419;CIGAR=1X;DP=15408;DPB=15408;DPRA=0;EPP=26953.2;EPPR=6471.83;GTI=1;LEN=1;MEANALT=1.09574;MQM=59.9463;MQMR=59.9601;NS=94;NUMALT=1;ODDS=1.81052;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=438684;QR=105084;RO=2979;RPL=6427;RPP=36.0964;RPPR=10.1545;RPR=5992;RUN=1;SAF=6427;SAP=36.0964;SAR=5992;SRF=1440;SRP=10.1545;SRR=1539;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:39,47:39:1392:47:1668:-124.519,0,-99.6904	0/1:185:90,95:90:3167:95:3374:-248.186,0,-229.562	0/1:259:124,135:124:4357:135:4776:-351.541,0,-314.337	1/1:306:1,305:1:36:305:10754:-964.182,-88.5169,0	1/1:77:0,77:0:0:77:2726:-245.582,-23.1793,0	1/1:103:0,103:0:0:103:3674:-330.864,-31.0061,0	1/1:130:0,130:0:0:130:4607:-414.796,-39.1339,0	0/1:327:184,143:184:6530:143:5030:-354.413,0,-489.327	1/1:162:2,160:2:72:160:5654:-502.146,-41.9301,0	1/1:144:0,144:0:0:144:5088:-458.069,-43.3483,0	1/1:132:1,131:1:36:131:4595:-410.122,-36.1377,0	0/1:203:89,114:89:3158:114:4006:-299.622,0,-223.337	0/1:147:54,92:54:1888:92:3288:-251.83,0,-125.886	1/1:149:1,148:1:36:148:5159:-460.854,-41.2552,0	1/1:142:0,142:0:0:142:5013:-451.307,-42.7463,0	1/1:124:0,124:0:0:124:4355:-392.128,-37.3277,0	1/1:152:0,152:0:0:152:5302:-477.321,-45.7566,0	1/1:106:0,106:0:0:106:3740:-336.799,-31.9092,0	1/1:85:0,85:0:0:85:2978:-268.253,-25.5876,0	1/1:317:0,317:0:0:317:11231:-1010.17,-95.4265,0	1/1:259:1,257:1:32:257:9100:-815.694,-74.7314,0	0/1:106:81,25:81:2860:25:882:-47.7886,0,-225.726	1/1:137:0,137:0:0:137:4818:-433.78,-41.2411,0	1/1:56:1,55:1:36:55:1976:-174.512,-13.2594,0	1/1:110:0,110:0:0:110:3886:-349.931,-33.1133,0	0/1:420:216,204:216:7656:204:7243:-525.494,0,-562.644	1/1:301:0,301:0:0:301:10698:-962.703,-90.61,0	1/1:70:0,70:0:0:70:2453:-221.023,-21.0721,0	0/1:377:196,180:196:6959:180:6356:-458.739,0,-512.982	1/1:194:3,191:3:108:191:6691:-592.201,-48.3247,0	1/1:182:0,182:0:0:182:6452:-580.768,-54.7875,0	0/1:19:8,11:8:270:11:364:-27.3579,0,-18.9081	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	1/1:434:1,433:1:36:433:15254:-1368.97,-127.049,0	1/1:121:0,121:0:0:121:4280:-385.381,-36.4246,0	0/1:132:65,67:65:2274:67:2347:-171.658,0,-165.184	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:273:141,132:141:5001:132:4692:-340.261,0,-368.055	0/1:72:29,43:29:1013:43:1523:-115.688,0,-69.8052	1/1:277:0,277:0:0:277:9754:-877.782,-83.3853,0	1/1:210:0,210:0:0:210:7340:-660.655,-63.2163,0	1/1:173:2,171:2:72:171:5995:-532.827,-45.2415,0	0/1:154:84,70:84:2996:70:2487:-177.696,0,-223.514	1/1:196:0,196:0:0:196:6942:-624.849,-59.0019,0	1/1:214:0,214:0:0:214:7493:-674.42,-64.4204,0	1/1:149:0,149:0:0:149:5286:-475.878,-44.8535,0	0/1:233:113,120:113:3970:120:4255:-312.99,0,-287.349	1/1:166:0,166:0:0:166:5843:-525.986,-49.971,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:173:83,90:83:2940:90:3207:-236.775,0,-212.755	1/1:114:0,114:0:0:114:4048:-364.509,-34.3174,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:248:132,116:132:4641:116:4089:-293.539,0,-343.197	0/1:67:35,31:35:1237:31:1100:-79.0829,0,-91.4047	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	1/1:26:0,26:0:0:26:923:-83.3868,-7.82678,0	1/1:130:1,129:1:36:129:4547:-405.8,-35.5356,0	0/1:204:97,107:97:3447:107:3780:-278.989,0,-249.034	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:278:0,278:0:0:278:9840:-885.553,-83.6863,0	1/1:336:3,333:3:108:333:11797:-1051.52,-91.0709,0	1/1:116:2,114:2:72:114:4075:-360.095,-28.0828,0	1/1:144:0,144:0:0:144:5160:-464.54,-43.3483,0	1/1:309:0,309:0:0:309:10879:-979.021,-93.0183,0	0/1:266:176,88:176:6187:88:3063:-196.069,0,-477.087	1/1:88:1,87:1:36:87:3060:-271.947,-22.8924,0	1/1:101:0,101:0:0:101:3573:-321.588,-30.404,0	0/1:168:69,99:69:2441:99:3496:-264.277,0,-169.371	1/1:25:0,24:0:0:24:864:-77.8762,-7.22472,0	1/1:105:0,105:0:0:105:3686:-331.94,-31.6082,0	1/1:103:0,103:0:0:103:3676:-331.044,-31.0061,0	1/1:221:0,221:0:0:221:7825:-704.28,-66.5276,0	1/1:258:1,257:1:36:257:9126:-817.721,-74.0675,0	0/1:119:58,60:58:2046:60:2109:-154.342,0,-148.677	0/1:245:115,130:115:4056:130:4591:-339.474,0,-291.476	0/1:13:7,6:7:252:6:207:-15.0535,0,-19.1156	1/1:228:0,228:0:0:228:8054:-724.884,-68.6348,0	1/1:232:0,232:0:0:232:8148:-733.104,-69.839,0	1/1:334:0,334:0:0:334:11906:-1071.4,-100.544,0	1/1:198:3,194:3:108:194:6812:-603.091,-49.5576,0	0/1:166:83,82:83:2928:82:2936:-214.445,0,-213.619	0/1:179:81,98:81:2796:98:3430:-255.03,0,-197.993	0/1:319:150,169:150:5218:169:5957:-439.896,0,-373.736	1/1:78:0,78:0:0:78:2751:-247.828,-23.4803,0	1/1:146:0,146:0:0:146:5158:-464.365,-43.9504,0	1/1:163:0,163:0:0:163:5720:-514.832,-49.0679,0	0/1:122:58,64:58:2041:64:2236:-164.776,0,-147.129	0/1:222:113,109:113:3957:109:3863:-281.038,0,-289.497	0/1:240:164,76:164:5790:76:2664:-167.761,0,-448.973	1/1:158:0,158:0:0:158:5575:-501.878,-47.5627,0	1/1:270:0,270:0:0:270:9601:-864.049,-81.2781,0
chr03	8635624	.	C	A	30532.2	PASS	AB=0.530212;ABP=22.8229;AC=32;AF=0.170213;AN=188;AO=1331;CIGAR=1X;DP=6532;DPB=6532;DPRA=1.23011;EPP=6.02687;EPPR=3.85608;GTI=3;LEN=1;MEANALT=1.05882;MQM=59.9985;MQMR=59.99;NS=94;NUMALT=1;ODDS=0.456219;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47493;QR=183638;RO=5199;RPL=1330;RPP=2884.56;RPPR=11179.9;RPR=1;RUN=1;SAF=686;SAP=5.75278;SAR=645;SRF=2564;SRP=5.11578;SRR=2635;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:14,9:14:496:9:315:-21.7635,0,-38.0506	0/1:56:27,29:27:972:29:1036:-76.6962,0,-70.9402	0/1:80:40,40:40:1428:40:1427:-104.644,0,-104.735	0/0:100:100,0:100:3521:0:0:0,-30.103,-317.1	0/0:40:40,0:40:1405:0:0:0,-12.0412,-126.745	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6397	0/0:50:50,0:50:1726:0:0:0,-15.0515,-155.618	0/1:89:41,48:41:1464:48:1716:-127.934,0,-105.264	0/0:81:81,0:81:2873:0:0:0,-24.3834,-258.807	0/0:76:76,0:76:2667:0:0:0,-22.8783,-240.275	0/0:93:93,0:93:3271:0:0:0,-27.9958,-294.612	0/1:154:76,78:76:2704:78:2788:-204.802,0,-197.246	0/1:140:72,68:72:2572:68:2424:-176.272,0,-189.586	0/0:89:89,0:89:3123:0:0:0,-26.7917,-281.298	0/0:126:124,2:124:4390:2:72:0,-31.0931,-388.438	0/0:89:89,0:89:3142:0:0:0,-26.7917,-283.005	0/0:122:122,0:122:4332:0:0:0,-36.7257,-390.06	0/0:78:78,0:78:2748:0:0:0,-23.4803,-247.565	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.86	0/0:86:86,0:86:3041:0:0:0,-25.8886,-273.918	0/0:98:98,0:98:3495:0:0:0,-29.5009,-314.761	0/1:23:7,16:7:248:16:572:-44.8897,0,-15.7405	0/0:43:43,0:43:1502:0:0:0,-12.9443,-135.469	0/0:57:57,0:57:2004:0:0:0,-17.1587,-180.631	0/0:55:55,0:55:1939:0:0:0,-16.5566,-174.783	0/1:135:64,71:64:2232:71:2544:-188.571,0,-160.502	0/0:132:132,0:132:4655:0:0:0,-39.736,-419.114	0/0:52:52,0:52:1831:0:0:0,-15.6536,-165.067	0/1:77:37,40:37:1332:40:1408:-103.836,0,-97.0031	0/0:28:28,0:28:972:0:0:0,-8.42884,-87.7892	0/0:54:54,0:54:1888:0:0:0,-16.2556,-170.196	0/1:2:1,1:1:36:1:27:-2.09772,0,-2.99621	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:279:279,0:279:9831:0:0:0,-83.9874,-884.75	0/0:31:31,0:31:1073:0:0:0,-9.33193,-96.8757	0/1:105:49,56:49:1744:56:2004:-149.025,0,-125.636	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:82:34,48:34:1179:48:1716:-130.041,0,-81.7264	0/1:56:30,26:30:1049:26:928:-66.9806,0,-77.8605	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.155	0/0:105:105,0:105:3717:0:0:0,-31.6081,-334.733	0/0:97:97,0:97:3393:0:0:0,-29.1999,-305.587	0/1:38:19,19:19:668:19:676:-49.7289,0,-49.0065	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.86	0/0:63:63,0:63:2224:0:0:0,-18.9649,-200.422	0/0:48:48,0:48:1696:0:0:0,-14.4494,-152.926	0/1:75:39,35:39:1369:35:1252:-90.3491,0,-100.871	0/0:67:67,0:67:2370:0:0:0,-20.169,-213.558	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/1:85:50,35:50:1784:35:1241:-86.4058,0,-135.255	0/0:24:24,0:24:837:0:0:0,-7.22472,-75.6456	0/0:5:5,0:5:168:0:0:0,-1.50515,-15.4509	0/1:62:22,40:22:775:40:1440:-111.234,0,-51.4073	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:30:30,0:30:1059:0:0:0,-9.0309,-95.6204	0/1:126:54,71:54:1932:71:2544:-191.222,0,-136.168	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:71:71,0:71:2502:0:0:0,-21.3731,-225.433	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.986	0/0:58:54,4:54:1931:4:129:0,-5.53208,-162.138	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/1:83:28,55:28:991:55:1964:-152.05,0,-64.518	0/0:53:53,0:53:1880:0:0:0,-15.9546,-169.479	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:117:56,61:56:1936:61:2158:-159.265,0,-139.291	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.1477	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.462	0/0:87:87,0:87:3086:0:0:0,-26.1896,-277.969	0/0:81:81,0:81:2806:0:0:0,-24.3834,-252.779	0/1:86:44,42:44:1560:42:1504:-109.766,0,-114.803	0/1:77:35,42:35:1236:42:1492:-111.395,0,-88.3649	0/1:7:4,3:4:136:3:104:-7.5956,0,-10.4683	0/0:73:73,0:73:2577:0:0:0,-21.9752,-232.179	0/0:74:74,0:74:2625:0:0:0,-22.2762,-236.489	0/0:125:125,0:125:4443:0:0:0,-37.6287,-400.041	0/0:92:92,0:92:3237:0:0:0,-27.6948,-291.552	0/1:108:49,59:49:1747:59:2105:-157.206,0,-125.002	0/1:98:49,49:49:1672:49:1751:-128.372,0,-121.257	0/1:197:100,97:100:3507:97:3475:-253.658,0,-256.538	0/0:37:37,0:37:1308:0:0:0,-11.1381,-118.022	0/0:116:116,0:116:4136:0:0:0,-34.9195,-372.426	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/1:74:39,35:39:1373:35:1260:-91.4293,0,-101.59	0/1:106:51,55:51:1766:55:1949:-143.775,0,-127.307	0/1:112:28,84:28:996:84:3004:-236.876,0,-56.2395	0/0:55:55,0:55:1936:0:0:0,-16.5566,-174.514	0/0:174:174,0:174:6168:0:0:0,-52.3792,-555.224
chr03	8771287	.	G	A	71651.1	PASS	AB=0.465863;ABP=23.1727;AC=157;AF=0.835106;AN=188;AO=4348;CIGAR=1X;DP=5418;DPB=5418;DPRA=0;EPP=9202.93;EPPR=2198.02;GTI=1;LEN=1;MEANALT=1;MQM=30.9223;MQMR=57.2234;NS=94;NUMALT=1;ODDS=0.0298932;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155605;QR=38296;RO=1070;RPL=28;RPP=9202.93;RPPR=2223.42;RPR=4320;RUN=1;SAF=4348;SAP=9444.57;SAR=0;SRF=1067;SRP=2300.5;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:25,32:25:881:32:1144:-70.8991,0,-62.3755	0/1:29:16,13:16:572:13:468:-27.3137,0,-43.0836	0/1:94:46,48:46:1648:48:1697:-102.648,0,-120.307	1/1:103:0,103:0:0:103:3680:-269.811,-31.0061,0	1/1:37:0,37:0:0:37:1332:-102.009,-11.1381,0	1/1:24:0,24:0:0:24:860:-66.223,-7.22472,0	1/1:57:0,57:0:0:57:2040:-149.372,-17.1587,0	0/1:79:55,24:55:1972:24:864:-42.5021,0,-153.811	1/1:60:0,60:0:0:60:2156:-164.82,-18.0618,0	1/1:22:0,22:0:0:22:792:-57.9648,-6.62266,0	1/1:46:0,46:0:0:46:1644:-120.81,-13.8474,0	0/1:92:43,49:43:1520:49:1741:-106.044,0,-108.265	0/1:42:30,12:30:1076:12:432:-20.5133,0,-84.4738	1/1:61:0,61:0:0:61:2188:-167.615,-18.3628,0	1/1:51:0,51:0:0:51:1832:-133.83,-15.3525,0	1/1:45:0,45:0:0:45:1605:-122.539,-13.5464,0	1/1:32:0,32:0:0:32:1144:-87.9847,-9.63296,0	1/1:26:0,26:0:0:26:928:-71.4529,-7.82678,0	1/1:20:0,20:0:0:20:712:-55.1262,-6.0206,0	1/1:28:0,28:0:0:28:1000:-73.232,-8.42884,0	1/1:79:0,79:0:0:79:2817:-216.028,-23.7814,0	0/1:31:22,9:22:792:9:324:-13.8009,0,-62.202	1/1:63:0,63:0:0:63:2252:-164.859,-18.9649,0	1/1:43:0,43:0:0:43:1532:-117.364,-12.9443,0	1/1:30:0,30:0:0:30:1059:-81.6912,-9.0309,0	0/1:149:61,88:61:2177:88:3152:-179.082,0,-150.848	1/1:117:0,117:0:0:117:4177:-319.798,-35.2205,0	1/1:24:0,24:0:0:24:856:-66.1653,-7.22472,0	0/1:76:38,38:38:1356:38:1349:-73.4934,0,-99.3475	1/1:78:3,75:3:108:75:2681:-195.365,-13.4052,0	1/1:58:0,58:0:0:58:2076:-152.188,-17.4597,0	0/1:10:4,6:4:144:6:216:-13.7897,0,-10.3033	1/1:22:0,22:0:0:22:792:-60.7853,-6.62266,0	1/1:3:0,3:0:0:3:108:-8.55271,-0.90309,0	1/1:10:0,10:0:0:10:356:-27.6549,-3.0103,0	0/1:10:4,6:4:144:6:212:-13.6472,0,-10.3033	1/1:146:0,146:0:0:146:5252:-372.408,-43.9504,0	1/1:86:0,86:0:0:86:3076:-235.322,-25.8886,0	0/1:48:25,23:25:896:23:828:-48.9477,0,-66.5109	1/1:8:0,8:0:0:8:288:-22.2981,-2.40824,0	0/1:80:39,41:39:1400:41:1476:-89.3904,0,-102.145	0/1:34:17,17:17:612:17:612:-36.8049,0,-45.1425	1/1:75:1,74:1:36:74:2640:-199.299,-18.979,0	1/1:26:0,26:0:0:26:936:-68.4226,-7.82678,0	1/1:51:0,51:0:0:51:1828:-134.326,-15.3525,0	0/1:96:61,35:61:2196:35:1260:-60.8428,0,-168.552	1/1:96:0,96:0:0:96:3432:-262.971,-28.8989,0	1/1:128:0,128:0:0:128:4576:-333.884,-38.5318,0	1/1:53:0,53:0:0:53:1908:-138.889,-15.9546,0	0/1:61:29,32:29:1040:32:1148:-65.4659,0,-75.4928	1/1:27:0,27:0:0:27:964:-68.7163,-8.12781,0	1/1:4:0,4:0:0:4:140:-10.6338,-1.20412,0	0/1:64:35,29:35:1256:29:1040:-60.3974,0,-93.9361	1/1:28:0,28:0:0:28:1000:-71.1975,-8.42884,0	1/1:11:0,11:0:0:11:396:-30.3331,-3.31133,0	0/1:84:51,33:51:1827:33:1184:-64.524,0,-139.342	0/1:24:9,15:9:324:15:536:-32.1486,0,-22.2646	1/1:3:0,3:0:0:3:108:-7.89903,-0.90309,0	1/1:13:0,13:0:0:13:464:-33.2004,-3.91339,0	1/1:65:0,65:0:0:65:2328:-177.547,-19.567,0	0/1:94:53,41:53:1887:41:1460:-79.0684,0,-141.699	1/1:5:0,5:0:0:5:180:-13.4923,-1.50515,0	1/1:80:0,80:0:0:80:2852:-202.755,-24.0824,0	1/1:110:1,109:1:36:109:3908:-281.315,-29.5176,0	1/1:43:0,43:0:0:43:1544:-118.578,-12.9443,0	1/1:46:0,46:0:0:46:1652:-120.348,-13.8474,0	1/1:124:0,124:0:0:124:4420:-323.567,-37.3277,0	0/1:180:122,58:122:4369:58:2068:-97.4482,0,-338.07	1/1:39:0,39:0:0:39:1385:-106.488,-11.7402,0	1/1:19:0,19:0:0:19:676:-52.3192,-5.71957,0	0/1:50:27,23:27:968:23:824:-43.5361,0,-72.1989	1/1:15:0,15:0:0:15:528:-39.2657,-4.51545,0	1/1:153:0,153:0:0:153:5449:-418.761,-46.0576,0	1/1:44:0,44:0:0:44:1565:-119.96,-13.2453,0	1/1:100:0,100:0:0:100:3572:-274.234,-30.103,0	1/1:67:0,67:0:0:67:2396:-174.175,-20.169,0	0/1:94:60,34:60:2148:34:1216:-65.1968,0,-165.027	0/1:51:26,25:26:919:25:900:-53.5428,0,-67.5499	0/1:14:7,7:7:252:7:252:-15.3346,0,-18.8141	1/1:62:1,61:1:36:61:2192:-163.878,-15.0656,0	1/1:48:0,48:0:0:48:1716:-131.216,-14.4494,0	1/1:93:0,93:0:0:93:3348:-243.935,-27.9958,0	1/1:62:0,62:0:0:62:2228:-162.298,-18.6639,0	0/1:54:28,26:28:1000:26:932:-52.2669,0,-74.0026	0/1:26:4,22:4:140:22:792:-50.0755,0,-5.02363	0/1:99:37,62:37:1332:62:2228:-132.422,0,-90.1282	1/1:17:0,17:0:0:17:612:-47.0399,-5.11751,0	1/1:64:0,64:0:0:64:2300:-176.073,-19.2659,0	1/1:78:0,78:0:0:78:2792:-213.388,-23.4803,0	0/1:25:5,20:5:180:20:720:-48.0023,0,-8.98983	0/1:92:49,43:49:1756:43:1544:-91.1982,0,-130.629	0/1:53:36,17:36:1296:17:612:-28.748,0,-100.795	1/1:108:0,108:0:0:108:3872:-282.734,-32.5112,0	1/1:90:0,90:0:0:90:3232:-235.718,-27.0927,0
chr03	8771456	.	GAA	TAA,TAC	187384	PASS	AB=0.457482,0.539881;ABP=50.651,44.9253;AC=156,32;AF=0.829787,0.170213;AN=188;AO=6883,1644;CIGAR=1X2M,1X1M1X;DP=8546;DPB=8546;DPRA=0,1.02862;EPP=14949.3,3572.91;EPPR=0;GTI=2;LEN=1,3;MEANALT=1.55319,2.23529;MQM=59.9927,59.9696;MQMR=0;NS=94;NUMALT=2;ODDS=0.250142;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=246234,58290;QR=0;RO=0;RPL=0,0;RPP=14949.3,3572.91;RPPR=0;RPR=6883,1644;RUN=1,1;SAF=6883,1644;SAP=14949.3,3572.91;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:89:0,39,50:0:0:39,50:1388,1763:-257.013,-143.889,-132.149,-113.478,0,-98.4267	1/2:65:0,28,37:0:0:28,37:978,1298:-185.532,-105.982,-97.5536,-79.8998,0,-68.7617	1/2:119:0,59,60:0:0:59,60:2120,2151:-348.744,-175.795,-158.035,-173.308,0,-155.246	1/1:177:0,176,0:0:0:176,0:6286,0:-565.62,-52.9813,0,-565.62,-52.9813,-565.62	1/1:55:0,55,0:0:0:55,0:1961,0:-176.763,-16.5567,0,-176.763,-16.5567,-176.763	1/1:41:0,41,0:0:0:41,0:1457,0:-131.424,-12.3422,0,-131.424,-12.3422,-131.424	1/1:85:0,85,0:0:0:85,0:3017,0:-271.76,-25.5876,0,-271.76,-25.5876,-271.76	1/2:126:0,58,68:0:0:58,68:2065,2439:-367.594,-199.295,-181.835,-168.656,0,-148.186	1/1:115:0,115,0:0:0:115,0:4124,0:-371.344,-34.6185,0,-371.344,-34.6185,-371.344	1/1:24:0,23,1:0:0:23,1:824,29:-74.1905,-6.92369,0,-71.8847,-4.32506,-71.5837	1/1:45:0,45,0:0:0:45,0:1601,0:-144.378,-13.5464,0,-144.378,-13.5464,-144.378	1/2:118:0,58,60:0:0:58,60:2073,2143:-344.09,-175.069,-157.609,-169.379,0,-151.317	1/2:102:0,49,53:0:0:49,53:1736,1884:-295.3,-153.883,-139.133,-141.772,0,-125.817	1/1:49:0,49,0:0:0:49,0:1764,0:-159.044,-14.7505,0,-159.044,-14.7505,-159.044	1/1:87:0,87,0:0:0:87,0:3118,0:-280.846,-26.1896,0,-280.846,-26.1896,-280.846	1/1:75:0,75,0:0:0:75,0:2682,0:-241.624,-22.5773,0,-241.624,-22.5773,-241.624	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/1:49:0,49,0:0:0:49,0:1764,0:-159.044,-14.7505,0,-159.044,-14.7505,-159.044	1/1:36:0,36,0:0:0:36,0:1281,0:-115.591,-10.8371,0,-115.591,-10.8371,-115.591	1/1:305:0,305,0:0:0:305,0:10930,0:-983.594,-91.8142,0,-983.594,-91.8142,-983.594	1/1:164:0,163,0:0:0:163,0:5832,0:-524.631,-49.0679,0,-524.631,-49.0679,-524.631	1/2:120:0,48,72:0:0:48,72:1720,2545:-347.906,-207.626,-193.177,-140.636,0,-118.962	1/1:127:0,126,0:0:0:126,0:4486,0:-403.57,-37.9298,0,-403.57,-37.9298,-403.57	1/1:73:0,73,0:0:0:73,0:2609,0:-235.056,-21.9752,0,-235.056,-21.9752,-235.056	1/1:117:0,117,0:0:0:117,0:4193,0:-377.55,-35.2205,0,-377.55,-35.2205,-377.55	1/2:198:0,99,99:0:0:99,99:3549,3513:-576.038,-286.58,-256.778,-289.814,0,-260.012	1/1:222:0,222,0:0:0:222,0:7976,0:-717.858,-66.8287,0,-717.858,-66.8287,-717.858	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/2:251:0,136,115:0:0:136,115:4891,4112:-734.688,-335.646,-294.706,-399.399,0,-364.781	1/1:89:0,84,5:0:0:84,5:3008,178:-270.582,-25.2865,0,-256.074,-10.423,-254.569	1/1:84:0,83,0:0:0:83,0:2961,0:-266.362,-24.9855,0,-266.362,-24.9855,-266.362	1/2:11:0,8,3:0:0:8,3:288,108:-32.6714,-9.17208,-6.76384,-23.8592,0,-22.9561	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:14:0,6,8:0:0:6,8:216,286:-41.3028,-23.6772,-21.8711,-17.9843,0,-15.5761	1/1:244:0,243,0:0:0:243,0:8723,0:-784.803,-73.1503,0,-784.803,-73.1503,-784.803	1/1:75:0,75,0:0:0:75,0:2651,0:-238.832,-22.5773,0,-238.832,-22.5773,-238.832	1/2:54:0,29,25:0:0:29,25:1040,888:-157.541,-72.7129,-63.9831,-85.1845,0,-77.6587	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:113:0,59,53:0:0:59,53:2112,1881:-325.484,-153.252,-135.491,-172.228,0,-156.274	1/2:37:0,18,19:0:0:18,19:648,682:-108.864,-55.9903,-50.5717,-53.2333,0,-47.5138	1/1:152:0,152,0:0:0:152,0:5434,0:-489.186,-45.7566,0,-489.186,-45.7566,-489.186	1/1:70:0,70,0:0:0:70,0:2512,0:-226.332,-21.0721,0,-226.332,-21.0721,-226.332	1/1:59:0,59,0:0:0:59,0:2115,0:-190.618,-17.7608,0,-190.618,-17.7608,-190.618	1/2:129:0,64,65:0:0:64,65:2296,2288:-373.89,-186.61,-167.344,-187.635,0,-168.068	1/1:115:0,115,0:0:0:115,0:4128,0:-371.703,-34.6185,0,-371.703,-34.6185,-371.703	1/1:167:0,167,0:0:0:167,0:5911,0:-532.098,-50.272,0,-532.098,-50.272,-532.098	1/1:113:0,113,0:0:0:113,0:4033,0:-363.157,-34.0164,0,-363.157,-34.0164,-363.157	1/2:127:0,52,74:0:0:52,74:1868,2643:-367.937,-215.549,-199.895,-152.454,0,-130.178	1/1:76:0,76,0:0:0:76,0:2736,0:-246.482,-22.8783,0,-246.482,-22.8783,-246.482	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:173:0,66,106:0:0:66,106:2357,3777:-500.023,-307.861,-287.993,-192.159,0,-160.25	1/1:59:0,59,0:0:0:59,0:2124,0:-191.428,-17.7608,0,-191.428,-17.7608,-191.428	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:153:0,69,84:0:0:69,84:2470,2967:-443.404,-241.977,-221.206,-201.783,0,-176.496	1/2:71:0,30,41:0:0:30,41:1071,1457:-206.398,-119.083,-110.052,-87.6707,0,-75.3285	1/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chr03	9045720	.	G	A	40879.5	PASS	AB=0.497133;ABP=3.27173;AC=32;AF=0.170213;AN=188;AO=1834;CIGAR=1X;DP=9707;DPB=9707;DPRA=1.33574;EPP=3976.81;EPPR=17090.3;GTI=1;LEN=1;MEANALT=1.07317;MQM=59.3675;MQMR=59.9555;NS=94;NUMALT=1;ODDS=2.00738;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64829;QR=279682;RO=7869;RPL=874;RPP=11.7672;RPPR=157.82;RPR=960;RUN=1;SAF=873;SAP=12.1793;SAR=961;SRF=3560;SRP=157.82;SRR=4309;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:31,37:31:1107:37:1290:-95.4398,0,-79.4619	0/1:60:35,25:35:1252:25:888:-62.1445,0,-94.9233	0/1:154:95,59:95:3387:59:2072:-139.433,0,-258.687	0/0:167:167,0:167:5935:0:0:0,-50.272,-534.26	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:78:78,0:78:2778:0:0:0,-23.4803,-250.26	0/1:166:82,84:82:2932:84:2963:-216.912,0,-214.144	0/0:92:92,0:92:3262:0:0:0,-27.6948,-292.865	0/0:108:108,0:108:3809:0:0:0,-32.5112,-343.009	0/0:121:121,0:121:4284:0:0:0,-36.4246,-385.712	0/1:146:64,82:64:2279:82:2880:-215.445,0,-161.348	0/1:147:83,64:83:2946:64:2271:-160.392,0,-221.12	0/0:110:109,1:109:3854:1:36:0,-29.515,-343.458	0/0:111:111,0:111:3951:0:0:0,-33.4143,-355.78	0/0:114:114,0:114:4035:0:0:0,-34.3174,-363.339	0/0:103:103,0:103:3657:0:0:0,-31.0061,-329.325	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.545	0/0:199:198,1:198:7062:1:36:0,-56.3067,-632.042	0/0:159:159,0:159:5648:0:0:0,-47.8638,-508.44	0/1:74:36,38:36:1271:38:1329:-97.2896,0,-92.4159	0/0:97:97,0:97:3463:0:0:0,-29.1999,-311.88	0/0:49:49,0:49:1728:0:0:0,-14.7505,-155.802	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.786	0/1:245:116,128:116:4127:128:4556:-336.365,0,-297.802	0/0:244:243,1:243:8600:1:36:0,-69.854,-770.404	0/0:64:63,1:63:2220:1:32:0,-16.0666,-196.864	0/1:201:106,95:106:3793:95:3362:-241.968,0,-281.048	0/0:99:98,1:98:3482:1:36:0,-26.2037,-309.994	0/0:89:89,0:89:3145:0:0:0,-26.7917,-283.274	0/1:16:10,6:10:356:6:212:-14.6083,0,-27.5648	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:296:296,0:296:10508:0:0:0,-89.1049,-945.641	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.849	0/1:92:49,43:49:1715:43:1516:-108.985,0,-126.937	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:219:131,88:131:4674:88:3129:-215.908,0,-354.877	0/1:58:23,35:23:804:35:1248:-95.1351,0,-55.2196	0/0:136:136,0:136:4829:0:0:0,-40.9401,-434.72	0/0:129:129,0:129:4565:0:0:0,-38.8329,-411.014	0/0:85:85,0:85:3031:0:0:0,-25.5875,-273.018	0/1:115:57,58:57:2031:58:2054:-150.445,0,-148.439	0/0:113:113,0:113:4047:0:0:0,-34.0164,-364.399	0/0:145:143,2:143:5110:2:72:0,-36.8191,-453.212	0/0:88:88,0:88:3129:0:0:0,-26.4906,-281.836	0/1:146:63,83:63:2264:83:2964:-223.008,0,-160.067	0/0:110:110,0:110:3897:0:0:0,-33.1133,-350.923	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:148:70,78:70:2504:78:2753:-203.443,0,-181.06	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:137:67,70:67:2367:70:2500:-183.993,0,-172.045	0/1:40:23,17:23:824:17:593:-41.6539,0,-62.4421	0/1:11:7,4:7:243:4:144:-10.0023,0,-18.8962	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:66:65,0:65:2317:0:0:0,-19.5669,-208.43	0/1:149:77,72:77:2751:72:2525:-182.615,0,-202.978	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:121:121,0:121:4296:0:0:0,-36.4246,-386.818	0/0:171:171,0:171:6132:0:0:0,-51.4761,-551.975	0/0:88:86,2:86:3077:2:72:0,-19.6539,-270.32	0/0:87:87,0:87:3077:0:0:0,-26.1896,-277.157	0/0:150:147,3:147:5227:3:108:0,-35.0793,-460.494	0/1:138:54,84:54:1940:84:2958:-224.876,0,-133.334	0/0:117:117,0:117:4127:0:0:0,-35.2205,-371.615	0/0:72:72,0:72:2542:0:0:0,-21.6742,-229.029	0/1:95:54,41:54:1923:41:1430:-100.243,0,-144.748	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:66:66,0:66:2327:0:0:0,-19.868,-209.674	0/0:132:132,0:132:4723:0:0:0,-39.736,-425.221	0/0:94:94,0:94:3310:0:0:0,-28.2968,-298.093	0/0:143:143,0:143:5124:0:0:0,-43.0473,-461.288	0/1:80:42,38:42:1486:38:1353:-97.9619,0,-109.951	0/1:123:63,60:63:2231:60:2134:-155.298,0,-164.025	0/1:15:12,3:12:428:3:108:-5.55972,0,-34.3434	0/0:126:126,0:126:4492:0:0:0,-37.9298,-404.448	0/0:143:143,0:143:5103:0:0:0,-43.0473,-459.406	0/0:171:169,1:169:5961:1:36:0,-47.9366,-532.916	0/0:86:86,0:86:3056:0:0:0,-25.8886,-275.039	0/1:129:63,66:63:2230:66:2315:-169.757,0,-162.13	0/1:86:41,45:41:1449:45:1604:-118.754,0,-104.807	0/1:211:106,105:106:3728:105:3702:-269.627,0,-272.207	0/0:32:32,0:32:1130:0:0:0,-9.63296,-102.007	0/0:116:116,0:116:4107:0:0:0,-34.9195,-369.816	0/0:116:116,0:116:4125:0:0:0,-34.9195,-371.435	0/1:90:35,54:35:1225:54:1895:-143.617,0,-83.4005	0/1:192:103,89:103:3641:89:3149:-225.804,0,-270.097	0/1:102:38,64:38:1352:64:2256:-172.414,0,-91.2753	0/0:136:136,0:136:4845:0:0:0,-40.9401,-436.205	0/0:194:194,0:194:6903:0:0:0,-58.3998,-621.34
chr03	9045739	.	T	C	30410.8	PASS	AB=0.500724;ABP=3.02287;AC=31;AF=0.164894;AN=188;AO=1395;CIGAR=1X;DP=7584;DPB=7584;DPRA=1.37138;EPP=428.789;EPPR=2088.8;GTI=1;LEN=1;MEANALT=1.02564;MQM=59.4301;MQMR=59.951;NS=94;NUMALT=1;ODDS=0.958037;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49438;QR=221395;RO=6188;RPL=1389;RPP=2980.32;RPPR=13232.4;RPR=6;RUN=1;SAF=430;SAP=448.551;SAR=965;SRF=1851;SRP=2171.74;SRR=4337;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:12,22:12:428:22:773:-59.5719,0,-28.6238	0/1:42:26,16:26:924:16:576:-39.4977,0,-70.8344	0/1:62:46,16:46:1652:16:576:-33.5029,0,-130.291	0/0:167:167,0:167:5968:0:0:0,-50.272,-536.452	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:81:81,0:81:2884:0:0:0,-24.3834,-259.798	0/1:90:44,46:44:1568:46:1633:-120.151,0,-114.319	0/0:69:69,0:69:2445:0:0:0,-20.7711,-219.367	0/0:110:110,0:110:3920:0:0:0,-33.1133,-352.995	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.148	0/1:65:31,34:31:1112:34:1216:-90.1544,0,-80.7546	0/1:67:39,28:39:1400:28:990:-69.2436,0,-106.13	0/0:47:46,1:46:1648:1:32:0,-10.9491,-145.409	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:197:196,1:196:7016:1:36:0,-55.7046,-627.902	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/1:72:34,38:34:1194:38:1343:-99.2595,0,-86.0896	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.568	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:245:118,127:118:4195:127:4446:-326.539,0,-303.979	0/0:119:118,1:118:4240:1:36:0,-32.2253,-378.181	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:195:107,88:107:3812:88:3136:-223.766,0,-284.576	0/0:73:71,2:71:2556:2:68:0,-15.5175,-223.832	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.141	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:298:298,0:298:10680:0:0:0,-89.7069,-961.106	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:46:21,25:21:752:25:892:-66.707,0,-54.1589	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:174:102,72:102:3644:72:2555:-177.754,0,-275.786	0/1:39:14,25:14:491:25:892:-68.8411,0,-32.7809	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.045	0/0:127:127,0:127:4544:0:0:0,-38.2308,-409.127	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:111:54,57:54:1927:57:2034:-149.899,0,-140.29	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.407	0/0:143:141,2:141:5056:2:72:0,-36.2171,-448.268	0/0:84:83,1:83:2984:1:36:0,-21.6882,-265.191	0/1:141:62,79:62:2204:79:2792:-209.048,0,-156.179	0/0:111:111,0:111:3955:0:0:0,-33.4143,-356.143	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:108:51,57:51:1821:57:2044:-151.707,0,-131.658	0/0:52:52,0:52:1840:0:0:0,-15.6536,-165.878	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:73:40,33:40:1432:33:1188:-85.2442,0,-107.202	0/1:40:22,18:22:792:18:648:-46.6045,0,-59.5645	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.963	0/1:150:77,73:77:2764:73:2600:-189.055,0,-203.844	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:117:117,0:117:4170:0:0:0,-35.2205,-375.478	0/0:166:166,0:166:5960:0:0:0,-49.971,-536.501	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.87	0/0:146:144,2:144:5152:2:72:0,-37.1137,-456.985	0/1:140:57,82:57:2044:82:2904:-219.274,0,-142.029	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:92:54,38:54:1922:38:1324:-91.7379,0,-145.561	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.386	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.23	0/0:141:141,0:141:5052:0:0:0,-42.4452,-454.811	0/1:46:23,23:23:824:23:812:-59.5421,0,-60.6359	0/1:55:31,24:31:1116:24:864:-61.5236,0,-84.195	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/0:166:165,1:165:5875:1:36:0,-46.3727,-525.255	0/0:82:82,0:82:2944:0:0:0,-24.6845,-264.964	0/1:131:62,69:62:2220:69:2432:-179.679,0,-160.627	0/1:88:43,45:43:1536:45:1587:-116.622,0,-112.034	0/1:214:106,108:106:3792:108:3796:-277.209,0,-277.057	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:31:8,23:8:280:23:828:-65.4602,0,-16.2074	0/1:84:44,40:44:1576:40:1428:-103.513,0,-116.845	0/1:106:39,67:39:1392:67:2349:-179.662,0,-93.6698	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.872	0/0:197:197,0:197:7080:0:0:0,-59.3029,-637.256
chr03	9215221	.	AAC	GAC,GAT	650147	PASS	AB=0.56886,0.427483;ABP=138.184,152.92;AC=172,16;AF=0.914894,0.0851064;AN=188;AO=22542,1441;CIGAR=1X2M,1X1M1X;DP=24039;DPB=24112.7;DPRA=0,1.19817;EPP=48943.7,3132.1;EPPR=22.5536;GTI=1;LEN=1,3;MEANALT=1.75532,2.62069;MQM=59.928,59.6371;MQMR=60;NS=94;NUMALT=2;ODDS=48.2304;PAIRED=0,0;PAIREDR=0;PAO=69.5,72.5;PQA=2359.5,2467.5;PQR=0;PRO=78;QA=794548,50068;QR=267;RO=9;RPL=5765,375;RPP=11684.4,722.536;RPPR=3.25157;RPR=16777,1066;RUN=1,1;SAF=5764,375;SAP=11688.6,722.536;SAR=16778,1066;SRF=5;SRP=3.25157;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54,0:0:0:54,0:1888,0:-170.109,-16.2556,0,-170.109,-16.2556,-170.109	1/1:133:0,132,1:0:0:132,1:4671,36:-420.327,-39.736,0,-417.459,-36.8251,-417.158	1/1:127:0,127,0:0:0:127,0:4471,0:-402.318,-38.2308,0,-402.318,-38.2308,-402.318	1/1:459:0,457,0:0:0:457,0:16175,0:-1455.04,-137.571,0,-1455.04,-137.571,-1455.04	1/1:188:0,188,0:0:0:188,0:6661,0:-599.5,-56.5936,0,-599.5,-56.5936,-599.5	1/1:129:0,129,0:0:0:129,0:4554,0:-409.914,-38.8329,0,-409.914,-38.8329,-409.914	1/1:179:0,179,0:0:0:179,0:6265,0:-563.821,-53.8844,0,-563.821,-53.8844,-563.821	1/1:183:0,183,0:0:0:183,0:6489,0:-584.01,-55.0885,0,-584.01,-55.0885,-584.01	1/1:259:0,259,0:0:0:259,0:9110,0:-819.824,-77.9668,0,-819.824,-77.9668,-819.824	1/1:182:0,182,0:0:0:182,0:6438,0:-579.503,-54.7875,0,-579.503,-54.7875,-579.503	1/1:262:0,262,0:0:0:262,0:9256,0:-833.007,-78.8699,0,-833.007,-78.8699,-833.007	1/1:65:0,65,0:0:0:65,0:2311,0:-208.157,-19.567,0,-208.157,-19.567,-208.157	1/1:42:0,42,0:0:0:42,0:1480,0:-133.493,-12.6433,0,-133.493,-12.6433,-133.493	1/1:88:0,88,0:0:0:88,0:3109,0:-280.038,-26.4906,0,-280.038,-26.4906,-280.038	1/1:83:0,83,0:0:0:83,0:2951,0:-265.76,-24.9855,0,-265.76,-24.9855,-265.76	1/1:86:0,86,0:0:0:86,0:3033,0:-273.195,-25.8886,0,-273.195,-25.8886,-273.195	1/1:60:0,60,0:0:0:60,0:2131,0:-191.993,-18.0618,0,-191.993,-18.0618,-191.993	1/1:66:0,66,0:0:0:66,0:2343,0:-211.129,-19.868,0,-211.129,-19.868,-211.129	1/1:181:0,180,0:0:0:180,0:6350,0:-571.381,-54.1854,0,-571.381,-54.1854,-571.381	1/1:433:0,432,0:0:0:432,0:15235,0:-1370.57,-130.045,0,-1370.57,-130.045,-1370.57	1/1:249:1,247,0:1:36:247,0:8615,0:-771.894,-71.367,0,-772.195,-74.3544,-775.132	1/2:295:0,83,208:0:0:83,208:2902,7194:-820.38,-584.298,-559.313,-236.114,0,-173.5	1/1:268:1,267,0:1:28:267,0:9373,0:-840.498,-77.8763,0,-840.799,-80.375,-843.017	1/1:261:0,259,0:0:0:259,0:9092,0:-817.917,-77.9668,0,-817.917,-77.9668,-817.917	1/1:203:0,203,0:0:0:203,0:7114,0:-640.143,-61.1091,0,-640.143,-61.1091,-640.143	1/2:490:1,272,214:1:21:272,214:9633,7441:-1387.76,-603.358,-523.066,-783.205,0,-720.373	1/1:462:0,461,0:0:0:461,0:16356,0:-1471.54,-138.775,0,-1471.54,-138.775,-1471.54	1/1:32:0,32,0:0:0:32,0:1132,0:-102.189,-9.63296,0,-102.189,-9.63296,-102.189	1/2:545:0,284,259:0:0:284,259:10016,9091:-1555.1,-739.925,-654.433,-815.288,0,-737.321	1/1:306:0,301,4:0:0:301,4:10629,138:-956.084,-90.61,0,-944.873,-79.3869,-943.668	1/1:324:0,322,0:0:0:322,0:11364,0:-1021.89,-96.9317,0,-1021.89,-96.9317,-1021.89	1/1:436:0,435,0:0:0:435,0:15323,0:-1378.43,-130.948,0,-1378.43,-130.948,-1378.43	1/1:858:0,856,2:0:0:856,2:30131,65:-2710.7,-257.682,0,-2705.46,-252.259,-2704.85	1/1:763:0,763,0:0:0:763,0:26867,0:-2417.24,-229.686,0,-2417.24,-229.686,-2417.24	1/1:700:0,699,0:0:0:699,0:24524,0:-2206.38,-210.42,0,-2206.38,-210.42,-2206.38	1/1:263:0,263,0:0:0:263,0:9302,0:-837.089,-79.1709,0,-837.089,-79.1709,-837.089	1/1:317:1,314,0:1:28:314,0:11054,0:-991.935,-92.2889,0,-992.236,-94.5234,-994.454	1/1:379:0,377,1:0:0:377,1:13270,36:-1193.76,-113.488,0,-1190.82,-110.531,-1190.52	1/1:137:0,137,0:0:0:137,0:4833,0:-434.943,-41.2411,0,-434.943,-41.2411,-434.943	1/1:385:1,384,0:1:36:384,0:13505,0:-1211.81,-112.508,0,-1212.11,-115.596,-1215.05	1/2:228:0,166,62:0:0:166,62:5860,2154:-652.492,-175.3,-125.329,-477.417,0,-458.753	1/1:82:0,75,7:0:0:75,7:2628,250:-236.411,-22.5773,0,-216.039,-1.84856,-213.932	1/1:347:0,347,0:0:0:347,0:12281,0:-1104.96,-104.457,0,-1104.96,-104.457,-1104.96	1/1:94:0,94,0:0:0:94,0:3355,0:-302.101,-28.2968,0,-302.101,-28.2968,-302.101	1/1:85:0,85,0:0:0:85,0:2961,0:-266.643,-25.5876,0,-266.643,-25.5876,-266.643	1/2:203:0,113,90:0:0:113,90:3961,3130:-577.031,-254.772,-220.756,-322.549,0,-295.456	1/1:233:0,233,0:0:0:233,0:8205,0:-738.348,-70.14,0,-738.348,-70.14,-738.348	1/1:395:0,394,0:0:0:394,0:13901,0:-1250.73,-118.606,0,-1250.73,-118.606,-1250.73	1/1:222:0,215,1:0:0:215,1:7639,36:-687.218,-64.7215,0,-684.281,-61.7798,-683.98	1/2:200:0,116,84:0:0:116,84:4104,2938:-573.602,-239.367,-204.447,-334.586,0,-309.3	1/1:355:0,355,0:0:0:355,0:12494,0:-1123.96,-106.866,0,-1123.96,-106.866,-1123.96	1/1:992:1,988,0:1:28:988,0:34875,0:-3134.83,-295.219,0,-3135.13,-297.418,-3137.35	1/1:112:0,112,0:0:0:112,0:3902,0:-351.288,-33.7154,0,-351.288,-33.7154,-351.288	1/1:113:0,112,0:0:0:112,0:3954,0:-355.635,-33.7154,0,-355.635,-33.7154,-355.635	1/1:944:0,943,0:0:0:943,0:33195,0:-2986.21,-283.871,0,-2986.21,-283.871,-2986.21	1/2:197:0,139,57:0:0:139,57:4889,1950:-556.346,-158.377,-116.534,-398.099,0,-380.94	1/2:91:0,55,36:0:0:55,36:1951,1244:-260.32,-101.364,-84.8071,-159.248,0,-148.41	1/1:465:0,457,7:0:0:457,7:16099,247:-1448.27,-137.571,0,-1428.16,-117.35,-1426.05	1/1:1031:0,1028,3:0:0:1028,3:36175,105:-3254.14,-309.459,0,-3245.6,-300.566,-3244.69	1/1:198:0,197,0:0:0:197,0:6934,0:-623.703,-59.3029,0,-623.703,-59.3029,-623.703	1/2:121:0,73,47:0:0:73,47:2569,1653:-343.793,-134.668,-112.693,-209.235,0,-195.086	1/1:687:0,685,2:0:0:685,2:24098,63:-2167.89,-206.206,0,-2162.82,-200.824,-2162.22	1/1:97:0,96,0:0:0:96,0:3406,0:-306.286,-28.8989,0,-306.286,-28.8989,-306.286	1/1:338:0,335,2:0:0:335,2:11820,69:-1063.38,-100.845,0,-1057.77,-95.1871,-1057.17	1/1:132:0,130,2:0:0:130,2:4550,64:-409.476,-39.1339,0,-404.321,-33.8479,-403.719	1/1:176:0,176,0:0:0:176,0:6159,0:-554.412,-52.9813,0,-554.412,-52.9813,-554.412	1/1:415:0,414,0:0:0:414,0:14645,0:-1317.44,-124.626,0,-1317.44,-124.626,-1317.44	1/2:136:0,80,56:0:0:80,56:2834,1944:-389.106,-158.242,-134.16,-231.097,0,-214.239	1/1:208:1,207,0:1:33:207,0:7312,0:-654.836,-59.3151,0,-655.137,-62.3132,-657.805	1/1:121:0,121,0:0:0:121,0:4323,0:-389.177,-36.4246,0,-389.177,-36.4246,-389.177	1/2:92:0,31,61:0:0:31,61:1104,2099:-260.704,-170.718,-161.386,-90.2805,0,-71.9176	1/1:275:0,275,0:0:0:275,0:9627,0:-866.338,-82.7833,0,-866.338,-82.7833,-866.338	1/1:231:0,231,0:0:0:231,0:8092,0:-728.186,-69.5379,0,-728.186,-69.5379,-728.186	1/1:81:0,81,0:0:0:81,0:2862,0:-257.707,-24.3834,0,-257.707,-24.3834,-257.707	1/1:351:0,346,3:0:0:346,3:12096,100:-1088.19,-104.156,0,-1080.1,-96.0146,-1079.2	1/1:241:0,241,0:0:0:241,0:8582,0:-772.315,-72.5482,0,-772.315,-72.5482,-772.315	1/1:117:0,117,0:0:0:117,0:4146,0:-373.223,-35.2205,0,-373.223,-35.2205,-373.223	1/1:84:0,84,0:0:0:84,0:2932,0:-264.052,-25.2865,0,-264.052,-25.2865,-264.052	1/1:438:0,438,0:0:0:438,0:15419,0:-1387.37,-131.851,0,-1387.37,-131.851,-1387.37	1/1:181:0,181,0:0:0:181,0:6436,0:-579.27,-54.4864,0,-579.27,-54.4864,-579.27	1/1:187:1,186,0:1:21:186,0:6617,0:-593.612,-54.3757,0,-593.913,-55.9916,-595.501	1/1:388:1,386,0:1:36:386,0:13691,0:-1228.34,-113.25,0,-1228.64,-116.198,-1231.58	1/1:126:0,126,0:0:0:126,0:4440,0:-399.596,-37.9298,0,-399.596,-37.9298,-399.596	1/2:58:0,36,22:0:0:36,22:1280,761:-166.341,-62.0184,-51.1813,-104.54,0,-97.9168	1/2:108:0,58,50:0:0:58,50:2046,1699:-304.689,-138.086,-120.626,-166.948,0,-151.897	1/2:171:0,81,90:0:0:81,90:2854,3129:-487.015,-254.649,-230.266,-232.617,0,-205.524	1/1:69:0,69,0:0:0:69,0:2424,0:-218.346,-20.7711,0,-218.346,-20.7711,-218.346	1/1:127:0,127,0:0:0:127,0:4476,0:-402.94,-38.2308,0,-402.94,-38.2308,-402.94	1/1:103:0,103,0:0:0:103,0:3642,0:-327.897,-31.0061,0,-327.897,-31.0061,-327.897	1/1:108:0,105,3:0:0:105,3:3696,108:-332.474,-31.6082,0,-323.662,-22.4361,-322.759	1/2:278:0,247,31:0:0:247,31:8690,1076:-795.077,-87.6832,-13.3288,-707.741,0,-698.409	1/2:69:0,33,36:0:0:33,36:1152,1248:-195.483,-101.782,-91.848,-94.0491,0,-83.212	1/1:105:0,105,0:0:0:105,0:3663,0:-329.86,-31.6082,0,-329.86,-31.6082,-329.86	1/1:101:0,101,0:0:0:101,0:3546,0:-319.333,-30.404,0,-319.333,-30.404,-319.333
chr03	9215264	.	C	T	25935.7	PASS	AB=0.451905;ABP=76.3256;AC=27;AF=0.143617;AN=188;AO=1670;CIGAR=1X;DP=19510;DPB=19510;DPRA=0.791;EPP=3629.37;EPPR=37593.2;GTI=2;LEN=1;MEANALT=1.02857;MQM=59.6389;MQMR=59.9664;NS=94;NUMALT=1;ODDS=7.95166;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59844;QR=637157;RO=17835;RPL=1670;RPP=3629.37;RPPR=37593.2;RPR=0;RUN=1;SAF=0;SAP=3629.37;SAR=1670;SRF=0;SRP=38731.2;SRR=17835;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:16,20:16:572:20:716:-53.9306,0,-40.9763	0/1:189:121,68:121:4319:68:2429:-161.895,0,-331.992	0/1:140:88,52:88:3147:52:1872:-126.608,0,-241.311	0/0:288:288,0:288:10296:0:0:0,-86.6966,-926.407	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/0:78:78,0:78:2769:0:0:0,-23.4803,-249.395	0/0:84:84,0:84:2986:0:0:0,-25.2865,-268.97	0/1:255:132,123:132:4707:123:4398:-319.097,0,-347.029	0/0:150:147,3:147:5212:3:108:0,-35.0793,-459.147	0/0:118:118,0:118:4220:0:0:0,-35.5215,-379.981	0/0:237:237,0:237:8449:0:0:0,-71.3441,-760.416	0/1:69:26,43:26:928:43:1536:-117.758,0,-63.0672	0/1:66:27,39:27:953:39:1404:-106.789,0,-66.2153	0/0:61:61,0:61:2167:0:0:0,-18.3628,-195.296	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.155	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:160:160,0:160:5686:0:0:0,-48.1648,-511.859	0/0:218:218,0:218:7779:0:0:0,-65.6245,-700.143	0/0:157:157,0:157:5611:0:0:0,-47.2617,-505.111	0/1:172:41,131:41:1433:131:4710:-371.962,0,-77.4866	0/0:177:177,0:177:6327:0:0:0,-53.2823,-569.522	0/0:196:196,0:196:6974:0:0:0,-59.0019,-627.729	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:382:212,170:212:7591:170:6070:-431.263,0,-568.234	0/0:232:232,0:232:8288:0:0:0,-69.839,-745.926	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:223:122,101:122:4357:101:3628:-259.559,0,-325.174	0/0:237:233,4:233:8338:4:144:0,-58.0305,-737.113	0/0:261:261,0:261:9298:0:0:0,-78.5688,-836.79	0/0:442:441,0:441:15761:0:0:0,-132.754,-1417.82	0/0:855:855,0:855:30582:0:0:0,-257.381,-2751.45	0/0:785:784,1:784:27999:1:36:0,-232.71,-2515.48	0/0:724:724,0:724:25902:0:0:0,-217.946,-2328.82	0/0:254:254,0:254:9070:0:0:0,-76.4616,-815.09	0/0:164:164,0:164:5876:0:0:0,-49.3689,-528.932	0/0:261:261,0:261:9355:0:0:0,-78.5688,-841.655	0/1:158:130,28:130:4643:28:1008:-43.4713,0,-370.469	0/0:386:386,0:386:13782:0:0:0,-116.198,-1240.16	0/1:152:87,65:87:3116:65:2331:-164.24,0,-234.91	0/1:77:69,8:69:2467:8:288:-3.07497,0,-199.104	0/0:184:184,0:184:6584:0:0:0,-55.3895,-592.64	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.448	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/1:71:44,27:44:1576:27:972:-66.4248,0,-120.758	0/0:138:138,0:138:4908:0:0:0,-41.5421,-441.872	0/0:299:299,0:299:10689:0:0:0,-90.008,-961.918	0/0:130:130,0:130:4643:0:0:0,-39.1339,-418.033	0/1:172:89,83:89:3187:83:2978:-216.471,0,-235.273	0/0:157:157,0:157:5624:0:0:0,-47.2617,-505.724	0/0:1029:1029,0:1029:36803:0:0:0,-309.76,-3310.78	0/1:120:72,48:72:2575:48:1713:-118.328,0,-195.875	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:962:962,0:962:34413:0:0:0,-289.591,-3095.45	0/1:165:106,59:106:3804:59:2112:-140.617,0,-292.881	0/1:58:22,36:22:788:36:1281:-98.1315,0,-53.7851	0/0:463:463,0:463:16497:0:0:0,-139.377,-1484.39	0/0:1076:1074,0:1074:38366:0:0:0,-323.306,-3450.47	0/0:127:127,0:127:4540:0:0:0,-38.2308,-408.768	0/1:82:31,51:31:1116:51:1824:-139.757,0,-76.0672	0/0:712:710,2:710:25418:2:72:0,-207.497,-2280.06	0/0:135:135,0:135:4827:0:0:0,-40.639,-434.585	0/0:270:269,1:269:9620:1:36:0,-77.6798,-862.151	0/0:94:90,3:90:3216:3:108:0,-18.1681,-279.622	0/0:128:128,0:128:4579:0:0:0,-38.5318,-412.275	0/0:307:307,0:307:10956:0:0:0,-92.4162,-984.999	0/1:99:44,55:44:1565:55:1972:-147.923,0,-111.338	0/0:167:167,0:167:5939:0:0:0,-50.272,-534.62	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145	0/1:74:29,45:29:1035:45:1616:-123.419,0,-71.1868	0/0:276:276,0:276:9843:0:0:0,-83.0843,-885.819	0/0:113:113,0:113:4047:0:0:0,-34.0164,-364.413	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:246:243,3:243:8646:3:108:0,-63.9782,-768.063	0/0:149:149,0:149:5334:0:0:0,-44.8535,-480.192	0/1:173:82,91:82:2931:91:3253:-240.907,0,-211.924	0/1:144:69,75:69:2467:75:2700:-199.893,0,-178.935	0/0:445:444,0:444:15879:0:0:0,-133.657,-1428.37	0/0:147:147,0:147:5248:0:0:0,-44.2514,-472.458	0/0:125:125,0:125:4462:0:0:0,-37.6287,-401.749	0/0:219:219,0:219:7803:0:0:0,-65.9256,-702.298	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.889	0/1:41:19,22:19:676:22:781:-58.2306,0,-48.8258	0/1:91:41,50:41:1476:50:1788:-133.691,0,-105.742	0/1:150:58,92:58:2058:92:3308:-252.782,0,-140.336	0/0:55:55,0:55:1956:0:0:0,-16.5566,-176.316	0/0:72:72,0:72:2564:0:0:0,-21.6742,-231.011	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:88:84,4:84:2986:4:144:0,-13.177,-255.658	0/1:241:211,30:211:7505:30:1076:-24.4143,0,-602.943	0/1:49:12,37:12:423:37:1324:-104.697,0,-23.6546	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.92	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257
chr03	9215369	.	T	A,G	194897	PASS	AB=0.333867,0.665333;ABP=902.009,893.372;AC=152,34;AF=0.817204,0.182796;AN=186;AO=5738,2517;CIGAR=1X,1X;DP=8259;DPB=8259;DPRA=44.875,1.58355;EPP=11643,5399.34;EPPR=5.18177;GTI=10;LEN=1,1;MEANALT=1.48913,1.97826;MQM=59.6192,59.9662;MQMR=60;NS=93;NUMALT=2;ODDS=13313;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=205012,88052;QR=129;RO=4;RPL=5674,911;RPP=11913.2,419.727;RPPR=5.18177;RPR=64,1606;RUN=1,1;SAF=32,905;SAP=12186.5,434.241;SAR=5706,1612;SRF=2;SRP=3.0103;SRR=2;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:33:0,9,24:0:0:9,24:320,847:-95.3942,-69.324,-66.6147,-26.4248,0,-19.2001	1/2:165:0,58,107:0:0:58,107:2076,3746:-474.218,-305.123,-287.663,-169.449,0,-137.239	1/2:143:0,55,88:0:0:55,88:1968,3112:-414.299,-253.816,-237.26,-160.838,0,-134.348	1/1:149:0,149,0:0:0:149,0:5317,0:-478.648,-44.8535,0,-478.648,-44.8535,-478.648	1/1:49:0,48,1:0:0:48,1:1707,36:-153.552,-14.4494,0,-150.615,-11.1522,-150.314	1/1:36:0,36,0:0:0:36,0:1284,0:-115.853,-10.8371,0,-115.853,-10.8371,-115.853	1/1:93:0,93,0:0:0:93,0:3325,0:-299.19,-27.9958,0,-299.19,-27.9958,-299.19	1/2:156:0,61,95:0:0:61,95:2164,3296:-444.548,-268.262,-249.899,-176.638,0,-148.04	1/1:76:0,76,0:0:0:76,0:2711,0:-244.126,-22.8783,0,-244.126,-22.8783,-244.126	1/1:108:0,108,0:0:0:108,0:3853,0:-346.949,-32.5112,0,-346.949,-32.5112,-346.949	1/1:63:0,63,0:0:0:63,0:2254,0:-203.121,-18.9649,0,-203.121,-18.9649,-203.121	1/2:77:0,20,57:0:0:20,57:701,1991:-219.344,-162.303,-156.282,-57.3911,0,-40.2324	1/2:86:0,30,56:0:0:30,56:1070,1948:-245.922,-158.736,-149.705,-87.5394,0,-70.6817	1/1:77:0,77,0:0:0:77,0:2751,0:-247.769,-23.1793,0,-247.769,-23.1793,-247.769	1/1:38:0,38,0:0:0:38,0:1364,0:-123.052,-11.4391,0,-123.052,-11.4391,-123.052	1/1:45:0,44,1:0:0:44,1:1580,36:-141.76,-13.2453,0,-138.822,-9.94808,-138.521	1/1:97:0,97,0:0:0:97,0:3462,0:-311.774,-29.1999,0,-311.774,-29.1999,-311.774	1/1:41:0,41,0:0:0:41,0:1467,0:-132.155,-12.3422,0,-132.155,-12.3422,-132.155	1/1:30:0,30,0:0:0:30,0:1080,0:-97.4887,-9.0309,0,-97.4887,-9.0309,-97.4887	1/1:116:0,116,0:0:0:116,0:4147,0:-373.406,-34.9195,0,-373.406,-34.9195,-373.406	1/1:120:0,119,1:0:0:119,1:4215,36:-378.988,-35.8226,0,-376.05,-32.5253,-375.749	1/2:95:0,25,70:0:0:25,70:896,2446:-272.402,-199.324,-191.799,-73.4338,0,-52.3617	1/1:44:0,44,0:0:0:44,0:1576,0:-142.132,-13.2453,0,-142.132,-13.2453,-142.132	1/1:105:0,104,1:0:0:104,1:3719,36:-334.533,-31.3071,0,-331.596,-28.0099,-331.295	1/1:60:0,60,0:0:0:60,0:2151,0:-193.841,-18.0618,0,-193.841,-18.0618,-193.841	1/2:369:0,121,248:0:0:121,248:4310,8714:-1060.91,-709.611,-673.186,-351.65,0,-276.995	1/1:208:0,207,1:0:0:207,1:7404,36:-665.851,-62.3132,0,-662.914,-59.016,-662.613	1/1:38:1,37,0:1:36:37,0:1319,0:-115.347,-7.84087,0,-115.648,-11.1381,-118.586	1/2:305:0,114,191:0:0:114,191:4083,6697:-877.753,-544.828,-510.511,-333.28,0,-275.783	1/1:72:0,70,2:0:0:70,2:2504,72:-225.242,-21.0721,0,-219.367,-14.8374,-218.765	1/1:107:0,107,0:0:0:107,0:3839,0:-345.683,-32.2102,0,-345.683,-32.2102,-345.683	1/2:7:0,4,3:0:0:4,3:144,108:-20.9168,-9.17208,-7.96796,-12.1045,0,-11.2014	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:126:0,125,1:0:0:125,1:4486,36:-403.537,-37.6288,0,-400.602,-34.3332,-400.301	1/1:113:0,112,1:0:0:112,1:4024,36:-361.95,-33.7154,0,-359.013,-30.4181,-358.712	1/2:73:0,21,52:0:0:21,52:748,1792:-206.863,-145.901,-139.579,-61.3155,0,-45.6619	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:140:0,49,91:0:0:49,91:1748,3248:-407.615,-265.146,-250.395,-142.826,0,-115.432	1/2:36:0,9,27:0:0:9,27:324,941:-103.244,-76.8739,-74.1646,-26.7262,0,-18.5984	1/1:64:0,64,0:0:0:64,0:2287,0:-206.077,-19.2659,0,-206.077,-19.2659,-206.077	1/1:111:0,111,0:0:0:111,0:3955,0:-356.088,-33.4143,0,-356.088,-33.4143,-356.088	1/1:49:0,49,0:0:0:49,0:1747,0:-157.505,-14.7505,0,-157.505,-14.7505,-157.505	1/2:91:0,36,55:0:0:36,55:1292,1916:-261.521,-156.157,-145.32,-105.718,0,-89.1616	1/1:98:0,98,0:0:0:98,0:3494,0:-314.589,-29.5009,0,-314.589,-29.5009,-314.589	1/1:129:0,129,0:0:0:129,0:4603,0:-414.398,-38.8329,0,-414.398,-38.8329,-414.398	1/1:89:0,89,0:0:0:89,0:3150,0:-283.404,-26.7917,0,-283.404,-26.7917,-283.404	1/2:297:1,78,218:1:36:78,218:2803,7719:-854.197,-625.828,-605.286,-225.73,0,-163.043	1/1:92:0,92,0:0:0:92,0:3300,0:-297.199,-27.6948,0,-297.199,-27.6948,-297.199	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:158:0,41,117:0:0:41,117:1472,4091:-453.228,-333.159,-320.817,-120.426,0,-85.2052	1/1:20:0,20,0:0:0:20,0:720,0:-65.0825,-6.0206,0,-65.0825,-6.0206,-65.0825	1/1:16:0,16,0:0:0:16,0:572,0:-51.803,-4.81648,0,-51.803,-4.81648,-51.803	1/2:145:2,55,88:2:57:55,88:1976,3038:-402.926,-242.346,-230.314,-156.724,0,-134.757	1/2:74:0,21,53:0:0:21,53:756,1832:-210.401,-149.201,-142.879,-61.5536,0,-45.5991	1/2:6:0,2,4:0:0:2,4:72,140:-17.6186,-11.7405,-11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chr03	9215390	.	C	T	123408	PASS	AB=0.435489;ABP=107.512;AC=150;AF=0.815217;AN=184;AO=5738;CIGAR=1X;DP=7384;DPB=7384;DPRA=81.1319;EPP=12462.9;EPPR=3505.93;GTI=5;LEN=1;MEANALT=1.01099;MQM=59.6046;MQMR=59.9866;NS=92;NUMALT=1;ODDS=0.41291;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205305;QR=58843;RO=1645;RPL=5738;RPP=12462.9;RPPR=3514.54;RPR=0;RUN=1;SAF=0;SAP=12462.9;SAR=5738;SRF=1;SRP=3566.4;SRR=1644;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:18,10:18:644:10:352:-23.5769,0,-49.8618	0/1:160:100,60:100:3551:60:2156:-145.941,0,-271.443	0/1:113:58,55:58:2063:55:1957:-142.387,0,-151.924	1/1:147:0,147:0:0:147:5257:-473.249,-44.2514,0	1/1:48:1,47:1:36:47:1688:-148.606,-10.8512,0	1/1:36:0,36:0:0:36:1288:-116.214,-10.8371,0	1/1:92:0,92:0:0:92:3312:-297.272,-27.6948,0	0/1:136:74,62:74:2652:62:2198:-157.121,0,-197.986	1/1:78:0,78:0:0:78:2777:-250.062,-23.4803,0	1/1:111:0,111:0:0:111:3939:-354.678,-33.4143,0	1/1:62:0,62:0:0:62:2205:-198.712,-18.6639,0	0/1:46:25,21:25:896:21:752:-54.1555,0,-67.113	0/1:54:23,31:23:820:31:1112:-83.9559,0,-57.8669	1/1:83:0,83:0:0:83:2961:-266.612,-24.9855,0	1/1:38:0,38:0:0:38:1368:-123.412,-11.4391,0	1/1:45:0,45:0:0:45:1620:-145.718,-13.5464,0	1/1:95:0,95:0:0:95:3408:-306.81,-28.5979,0	1/1:42:0,42:0:0:42:1504:-135.517,-12.6433,0	1/1:29:0,29:0:0:29:1044:-94.2503,-8.72987,0	1/1:116:0,116:0:0:116:4156:-374.215,-34.9195,0	1/1:122:0,122:0:0:122:4362:-392.566,-36.7257,0	0/1:64:39,25:39:1396:25:885:-60.6998,0,-106.673	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:106:0,106:0:0:106:3778:-340.197,-31.9092,0	1/1:60:0,60:0:0:60:2141:-192.941,-18.0618,0	0/1:301:182,119:182:6504:119:4268:-293.684,0,-494.833	1/1:211:1,210:1:36:210:7495:-670.874,-59.9191,0	1/1:37:0,37:0:0:37:1327:-119.668,-11.1381,0	0/1:234:119,115:119:4244:115:4120:-300.215,0,-311.697	1/1:72:2,70:2:72:70:2520:-220.14,-14.8374,0	1/1:106:0,106:0:0:106:3793:-341.546,-31.9092,0	0/1:7:3,4:3:108:4:144:-11.2014,0,-7.96796	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:126:0,126:0:0:126:4524:-407.314,-37.9298,0	1/1:114:1,113:1:36:113:4049:-360.961,-30.7191,0	0/1:55:34,21:34:1220:21:756:-51.8024,0,-93.5502	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:109:59,50:59:2120:50:1792:-128.721,0,-158.256	0/1:23:14,9:14:500:9:324:-22.5118,0,-38.4125	1/1:63:0,63:0:0:63:2260:-203.648,-18.9649,0	1/1:109:0,109:0:0:109:3909:-351.943,-32.8123,0	1/1:50:0,50:0:0:50:1800:-162.274,-15.0515,0	0/1:70:35,35:35:1256:35:1256:-92.2732,0,-92.2732	1/1:96:0,96:0:0:96:3448:-309.996,-28.8989,0	1/1:128:0,128:0:0:128:4585:-412.538,-38.5318,0	1/1:88:0,88:0:0:88:3130:-281.919,-26.4906,0	0/1:260:183,77:183:6534:77:2768:-171.091,0,-509.874	1/1:89:0,89:0:0:89:3162:-284.78,-26.7917,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:123:82,41:82:2948:41:1472:-95.7413,0,-228.526	1/1:19:0,19:0:0:19:654:-59.1752,-5.71957,0	1/1:17:0,17:0:0:17:608:-55.0396,-5.11751,0	0/1:118:64,54:64:2285:54:1936:-138.972,0,-170.388	0/1:47:26,21:26:936:21:741:-52.3712,0,-70.4111	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:18:0,18:0:0:18:644:-58.2799,-5.41854,0	1/1:54:0,54:0:0:54:1940:-174.857,-16.2556,0	0/1:87:51,36:51:1836:36:1292:-90.3891,0,-139.331	1/1:7:0,7:0:0:7:252:-23.0274,-2.10721,0	1/1:197:0,197:0:0:197:7065:-634.911,-59.3029,0	1/1:151:0,151:0:0:151:5412:-487.203,-45.4555,0	0/1:87:9,78:9:324:78:2787:-224.88,0,-3.31624	1/1:57:0,57:0:0:57:2037:-183.573,-17.1587,0	1/1:91:6,85:6:216:85:3015:-251.696,-7.60322,0	0/1:79:63,16:63:2264:16:576:-28.3921,0,-180.241	1/1:23:0,23:0:0:23:813:-73.4814,-6.92369,0	1/1:48:0,48:0:0:48:1709:-154.066,-14.4494,0	0/1:73:40,33:40:1440:33:1184:-84.8931,0,-107.923	1/1:17:0,17:0:0:17:612:-55.4088,-5.11751,0	1/1:49:0,49:0:0:49:1745:-157.25,-14.7505,0	1/1:66:0,66:0:0:66:2376:-214.079,-19.868,0	1/1:104:0,104:0:0:104:3706:-333.418,-31.3071,0	1/1:136:0,136:0:0:136:4835:-435.242,-40.9401,0	0/1:100:49,51:49:1738:51:1828:-134.567,0,-126.6	0/1:98:62,36:62:2224:36:1280:-85.9875,0,-170.923	0/1:8:5,3:5:180:3:108:-7.66053,0,-14.1438	1/1:107:0,107:0:0:107:3844:-346.03,-32.2102,0	1/1:91:0,91:0:0:91:3260:-293.591,-27.3937,0	1/1:135:0,135:0:0:135:4791:-431.283,-40.6391,0	1/1:91:0,90:0:0:90:3225:-290.248,-27.0927,0	0/1:51:26,25:26:936:25:900:-65.9385,0,-69.2069	0/1:47:18,29:18:648:29:1044:-80.1248,0,-44.5035	0/1:131:66,65:66:2356:65:2336:-171.031,0,-172.864	1/1:42:0,42:0:0:42:1508:-135.996,-12.6433,0	1/1:64:0,64:0:0:64:2304:-207.581,-19.2659,0	1/1:58:0,58:0:0:58:2080:-187.431,-17.4597,0	0/1:37:14,23:14:504:23:824:-63.3437,0,-34.56	0/1:73:44,29:44:1576:29:1044:-72.2834,0,-120.156	0/1:69:46,23:46:1640:23:828:-54.0684,0,-127.118	1/1:115:1,114:1:32:114:4084:-364.497,-31.4191,0	1/1:81:0,81:0:0:81:2908:-261.949,-24.3834,0
chr03	9215396	.	A	G	121738	PASS	AB=0.427433;ABP=135.059;AC=152;AF=0.817204;AN=186;AO=5660;CIGAR=1X;DP=7324;DPB=7324;DPRA=79.5978;EPP=12293.5;EPPR=3590.33;GTI=4;LEN=1;MEANALT=1;MQM=59.6164;MQMR=59.9669;NS=93;NUMALT=1;ODDS=1.2624;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202607;QR=59582;RO=1664;RPL=5660;RPP=12293.5;RPPR=3590.33;RPR=0;RUN=1;SAF=0;SAP=12293.5;SAR=5660;SRF=0;SRP=3616.34;SRR=1664;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:17,9:17:612:9:324:-21.6564,0,-47.5867	0/1:162:101,61:101:3605:61:2188:-148.239,0,-275.801	0/1:113:61,52:61:2184:52:1864:-134.023,0,-162.81	1/1:150:0,150:0:0:150:5368:-483.236,-45.1545,0	1/1:49:1,48:1:36:48:1716:-151.124,-11.1522,0	1/1:35:0,35:0:0:35:1241:-111.983,-10.5361,0	1/1:93:0,93:0:0:93:3340:-299.79,-27.9958,0	0/1:136:77,59:77:2764:59:2108:-149.026,0,-208.061	1/1:75:0,75:0:0:75:2692:-242.472,-22.5773,0	1/1:112:0,112:0:0:112:4024:-362.26,-33.7154,0	1/1:60:0,60:0:0:60:2148:-193.586,-18.0618,0	0/1:47:26,21:26:923:21:756:-54.2155,0,-69.2384	0/1:56:25,31:25:896:31:1112:-83.3562,0,-64.1027	1/1:81:0,81:0:0:81:2900:-261.127,-24.3834,0	1/1:37:0,37:0:0:37:1328:-119.817,-11.1381,0	1/1:45:0,45:0:0:45:1608:-144.824,-13.5464,0	1/1:96:0,96:0:0:96:3436:-309.328,-28.8989,0	1/1:42:0,42:0:0:42:1504:-135.489,-12.6433,0	1/1:29:0,29:0:0:29:1044:-94.2503,-8.72987,0	1/1:115:0,115:0:0:115:4124:-371.336,-34.6185,0	1/1:118:0,118:0:0:118:4228:-380.556,-35.5215,0	0/1:61:39,22:39:1396:22:788:-52.8812,0,-107.576	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:106:0,106:0:0:106:3804:-342.537,-31.9092,0	1/1:58:0,58:0:0:58:2084:-187.815,-17.4597,0	0/1:298:180,118:180:6441:118:4228:-290.988,0,-490.068	1/1:206:0,206:0:0:206:7380:-664.034,-62.0122,0	1/1:37:0,37:0:0:37:1328:-119.756,-11.1381,0	0/1:231:118,113:118:4221:113:4016:-291.58,0,-310.531	1/1:72:2,70:2:68:70:2516:-220.16,-15.2165,0	1/1:108:0,108:0:0:108:3880:-349.371,-32.5112,0	0/1:7:3,4:3:108:4:144:-11.2014,0,-7.96796	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:123:0,123:0:0:123:4412:-397.24,-37.0267,0	1/1:114:1,113:1:36:113:4032:-359.434,-30.7191,0	0/1:54:34,20:34:1220:20:703:-47.3297,0,-93.8512	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:108:59,49:59:2120:49:1760:-126.144,0,-158.557	0/1:23:14,9:14:495:9:324:-22.5118,0,-37.9593	1/1:62:0,62:0:0:62:2228:-200.77,-18.6639,0	1/1:107:0,107:0:0:107:3819:-343.851,-32.2102,0	1/1:49:0,49:0:0:49:1760:-158.676,-14.7505,0	0/1:71:37,34:37:1324:34:1220:-88.7053,0,-98.0606	1/1:96:0,96:0:0:96:3420:-307.481,-28.8989,0	1/1:130:0,130:0:0:130:4672:-420.363,-39.1339,0	1/1:89:0,89:0:0:89:3169:-285.112,-26.7917,0	0/1:261:185,76:185:6621:76:2728:-167.192,0,-517.269	1/1:88:0,88:0:0:88:3132:-282.085,-26.4906,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:124:83,41:83:2980:41:1472:-95.4402,0,-231.104	1/1:19:0,19:0:0:19:680:-61.5094,-5.71957,0	1/1:17:0,17:0:0:17:608:-55.0396,-5.11751,0	0/1:119:66,53:66:2351:53:1896:-135.073,0,-176.026	0/1:46:27,19:27:968:19:680:-47.6818,0,-73.59	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:18:0,18:0:0:18:648:-58.6412,-5.41854,0	1/1:52:0,52:0:0:52:1856:-167.308,-15.6536,0	0/1:86:51,35:51:1828:35:1260:-87.8119,0,-138.912	1/1:7:0,7:0:0:7:252:-23.0274,-2.10721,0	1/1:191:0,191:0:0:191:6816:-613.362,-57.4967,0	1/1:146:0,146:0:0:146:5208:-468.855,-43.9504,0	0/1:87:9,78:9:324:78:2788:-224.967,0,-3.31624	1/1:57:0,57:0:0:57:2036:-183.486,-17.1587,0	1/1:92:6,86:6:216:86:3084:-257.821,-7.90425,0	0/1:83:66,17:66:2364:17:604:-29.703,0,-188.033	1/1:23:0,23:0:0:23:811:-72.6787,-6.92369,0	1/1:48:0,48:0:0:48:1712:-154.343,-14.4494,0	0/1:73:40,33:40:1423:33:1184:-84.8931,0,-106.392	1/1:16:0,16:0:0:16:572:-51.8088,-4.81648,0	1/1:48:0,48:0:0:48:1712:-154.307,-14.4494,0	1/1:62:0,62:0:0:62:2224:-200.406,-18.6639,0	1/1:103:0,103:0:0:103:3684:-331.198,-31.0061,0	1/1:131:0,131:0:0:131:4700:-423.132,-39.4349,0	0/1:98:49,49:49:1752:49:1756:-128.693,0,-128.463	0/1:97:62,35:62:2224:35:1240:-82.6849,0,-171.224	0/1:8:5,3:5:180:3:108:-7.66053,0,-14.1438	1/1:104:0,104:0:0:104:3708:-333.802,-31.3071,0	1/1:91:0,91:0:0:91:3256:-293.245,-27.3937,0	1/1:130:0,130:0:0:130:4668:-420.229,-39.1339,0	1/1:91:0,91:0:0:91:3264:-293.971,-27.3937,0	0/1:53:28,25:28:1008:25:900:-65.3364,0,-75.0818	0/1:47:18,29:18:639:29:1044:-80.1248,0,-43.6898	0/1:133:68,65:68:2448:65:2332:-170.078,0,-180.537	1/1:41:0,41:0:0:41:1464:-132.038,-12.3422,0	1/1:61:0,61:0:0:61:2176:-196.077,-18.3628,0	1/1:55:0,55:0:0:55:1964:-177.003,-16.5567,0	0/1:37:15,22:15:540:22:788:-60.1051,0,-37.7984	0/1:72:43,29:43:1539:29:1040:-72.224,0,-117.128	0/1:67:46,21:46:1656:21:756:-48.1936,0,-129.159	1/1:112:0,112:0:0:112:4012:-361.22,-33.7154,0	1/1:82:0,82:0:0:82:2924:-263.391,-24.6845,0
chr03	9216114	.	G	T	42750.7	PASS	AB=0.425;ABP=231.666;AC=28;AF=0.148936;AN=188;AO=2044;CIGAR=1X;DP=17626;DPB=17626;DPRA=1.29117;EPP=4441.5;EPPR=33828;GTI=0;LEN=1;MEANALT=1;MQM=59.8038;MQMR=59.98;NS=94;NUMALT=1;ODDS=36.9308;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72802;QR=548403;RO=15581;RPL=910;RPP=56.3155;RPPR=6896.52;RPR=1134;RUN=1;SAF=910;SAP=56.3155;SAR=1134;SRF=4273;SRP=6900.44;SRR=11308;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:47,18:47:1658:18:648:-39.0743,0,-129.939	0/1:109:61,48:61:2173:48:1712:-121.553,0,-163.022	0/1:97:57,40:57:2019:40:1432:-99.9419,0,-152.783	0/0:198:198,0:198:7004:0:0:0,-59.6039,-630.427	0/0:82:82,0:82:2914:0:0:0,-24.6845,-262.495	0/0:51:47,4:47:1668:4:140:0,-2.40795,-137.463	0/0:97:97,0:97:3428:0:0:0,-29.1999,-308.735	0/1:89:54,35:54:1902:35:1248:-85.8299,0,-144.665	0/0:145:145,0:145:5113:0:0:0,-43.6493,-460.309	0/0:101:100,1:100:3547:1:36:0,-26.8058,-315.843	0/0:431:430,1:430:15043:1:36:0,-126.146,-1349.94	0/1:202:101,101:101:3574:101:3606:-263.931,0,-261.051	0/1:127:73,54:73:2556:54:1940:-136.482,0,-192.06	0/0:164:164,0:164:5817:0:0:0,-49.3689,-523.645	0/0:140:140,0:140:4941:0:0:0,-42.1442,-444.843	0/0:111:111,0:111:3917:0:0:0,-33.4143,-352.727	0/0:105:105,0:105:3701:0:0:0,-31.6081,-333.293	0/0:85:85,0:85:3006:0:0:0,-25.5875,-270.773	0/0:155:155,0:155:5506:0:0:0,-46.6596,-495.67	0/0:235:234,1:234:8227:1:36:0,-67.1438,-736.854	0/0:248:248,0:248:8704:0:0:0,-74.6554,-783.364	0/1:82:36,46:36:1280:46:1625:-121.842,0,-90.8188	0/0:132:132,0:132:4652:0:0:0,-39.736,-418.845	0/0:92:92,0:92:3256:0:0:0,-27.6948,-293.261	0/0:110:110,0:110:3882:0:0:0,-33.1133,-349.577	0/1:255:148,107:148:5184:107:3835:-268.572,0,-389.943	0/0:272:272,0:272:9646:0:0:0,-81.8802,-868.093	0/0:65:64,1:64:2275:1:36:0,-15.9687,-201.414	0/1:235:108,127:108:3787:127:4529:-337.034,0,-270.288	0/0:145:137,8:137:4866:8:273:0,-18.7492,-413.193	0/0:130:130,0:130:4593:0:0:0,-39.1339,-413.539	0/0:268:262,6:262:9198:6:203:0,-62.0749,-809.205	0/0:516:516,0:516:18175:0:0:0,-155.331,-1635.38	0/0:227:227,0:227:7851:0:0:0,-68.3338,-706.63	0/0:1227:1225,2:1225:42742:2:72:0,-362.527,-3838.55	0/0:410:407,3:407:14204:3:108:0,-113.347,-1268.07	0/0:427:426,1:426:15003:1:36:0,-124.942,-1346.42	0/0:131:130,1:130:4613:1:36:0,-35.8367,-411.738	0/1:253:178,75:178:6248:75:2688:-165.983,0,-486.248	0/0:309:309,0:309:10892:0:0:0,-93.0183,-980.193	0/1:111:52,59:52:1836:59:2116:-157.289,0,-132.101	0/1:124:91,33:91:3225:33:1184:-69.534,0,-253.145	0/0:192:192,0:192:6740:0:0:0,-57.7978,-606.684	0/0:165:165,0:165:5802:0:0:0,-49.6699,-522.301	0/0:144:144,0:144:5065:0:0:0,-43.3483,-455.914	0/1:105:67,38:67:2334:38:1368:-91.7974,0,-178.71	0/0:120:120,0:120:4230:0:0:0,-36.1236,-380.88	0/0:159:159,0:159:5574:0:0:0,-47.8638,-501.786	0/0:99:99,0:99:3506:0:0:0,-29.802,-315.752	0/1:182:103,79:103:3626:79:2844:-201.384,0,-271.723	0/0:129:129,0:129:4560:0:0:0,-38.8329,-410.57	0/0:240:239,1:239:8432:1:21:0,-70.1473,-756.793	0/1:103:55,48:55:1947:48:1707:-122.902,0,-144.499	0/0:87:87,0:87:3035:0:0:0,-26.1896,-273.38	0/0:191:191,0:191:6705:0:0:0,-57.4967,-603.537	0/1:131:62,69:62:2195:69:2452:-181.364,0,-158.376	0/1:48:28,20:28:980:20:716:-50.3183,0,-74.0607	0/0:262:254,8:254:8924:8:284:0,-52.9665,-777.255	0/0:417:416,0:416:14534:0:0:0,-125.228,-1307.49	0/0:136:136,0:136:4830:0:0:0,-40.9401,-434.855	0/1:230:108,122:108:3819:122:4340:-321.501,0,-274.671	0/0:218:218,0:218:7676:0:0:0,-65.6245,-690.887	0/0:184:184,0:184:6525:0:0:0,-55.3895,-587.337	0/0:171:171,0:171:6118:0:0:0,-51.4761,-550.72	0/0:76:71,5:71:2515:5:180:0,-6.32621,-209.921	0/0:94:94,0:94:3309:0:0:0,-28.2968,-298.028	0/0:212:210,2:210:7447:2:72:0,-56.9816,-663.442	0/1:132:45,87:45:1572:87:3103:-239.744,0,-102.032	0/0:604:601,3:601:21158:3:108:0,-171.747,-1893.64	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/1:136:63,73:63:2222:73:2601:-193.38,0,-159.304	0/0:304:304,0:304:10599:0:0:0,-91.5131,-953.846	0/0:109:109,0:109:3819:0:0:0,-32.8123,-343.909	0/0:128:128,0:128:4501:0:0:0,-38.5318,-405.263	0/0:145:145,0:145:5111:0:0:0,-43.6493,-460.136	0/0:152:152,0:152:5393:0:0:0,-45.7566,-485.505	0/1:67:43,24:43:1528:24:830:-54.8373,0,-117.644	0/1:146:50,96:50:1753:96:3414:-263.518,0,-113.911	0/0:122:117,5:117:4162:5:172:0,-20.9077,-358.946	0/0:91:90,1:90:3203:1:36:0,-23.7955,-284.896	0/0:109:109,0:109:3824:0:0:0,-32.8123,-344.341	0/0:177:177,0:177:6226:0:0:0,-53.2823,-560.441	0/0:148:148,0:148:5275:0:0:0,-44.5524,-474.831	0/1:157:80,77:80:2815:77:2760:-201.348,0,-206.327	0/1:150:81,69:81:2838:69:2448:-175.409,0,-210.504	0/1:349:176,173:176:6188:173:6137:-447.368,0,-451.965	0/0:65:65,0:65:2292:0:0:0,-19.5669,-206.54	0/0:188:188,0:188:6634:0:0:0,-56.5936,-597.148	0/0:155:154,1:154:5418:1:36:0,-43.0614,-484.158	0/1:120:75,45:75:2655:45:1597:-107.723,0,-203.074	0/1:731:596,135:596:20949:135:4770:-209.383,0,-1664.88	0/1:144:53,91:53:1874:91:3231:-247.647,0,-125.589	0/0:102:102,0:102:3590:0:0:0,-30.7051,-323.309	0/0:186:186,0:186:6551:0:0:0,-55.9916,-589.68
chr03	9796101	.	G	A	13288	PASS	AB=0.513427;ABP=5.45945;AC=33;AF=0.175532;AN=188;AO=805;CIGAR=1X;DP=4341;DPB=4341;DPRA=1.02198;EPP=1751.05;EPPR=7668.31;GTI=0;LEN=1;MEANALT=1.05882;MQM=52.1553;MQMR=59.9179;NS=94;NUMALT=1;ODDS=3.2182;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28889;QR=126213;RO=3534;RPL=0;RPP=1751.05;RPPR=7676.99;RPR=805;RUN=1;SAF=805;SAP=1751.05;SAR=0;SRF=3533;SRP=7668.31;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:5,17:5:180:17:608:-47.19,0,-9.9294	0/1:70:43,27:43:1544:27:972:-65.7651,0,-118.181	0/1:33:14,19:14:504:19:675:-50.4333,0,-35.7595	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.088	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.313	0/1:37:17,20:17:608:20:720:-52.5244,0,-43.9139	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.126	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:38:22,16:22:792:16:557:-38.6827,0,-60.1665	0/1:56:20,36:20:688:36:1296:-99.2771,0,-45.3799	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.22	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.492	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.964	0/0:66:66,0:66:2334:0:0:0,-19.868,-210.309	0/1:49:16,33:16:572:33:1188:-90.8073,0,-37.063	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:78:36,42:36:1292:42:1512:-111.982,0,-93.1034	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.133	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5128	0/1:59:29,30:29:1040:30:1065:-77.5136,0,-76.1536	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:7:2,5:2:72:5:180:-14.4214,0,-4.72951	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.4756	0/1:8:6,2:6:201:2:72:-3.60092,0,-16.0088	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.951	0/0:90:90,0:90:3205:0:0:0,-27.0927,-288.672	0/1:54:28,26:28:1000:26:936:-67.5396,0,-74.0598	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:94:38,56:38:1360:56:2000:-150.068,0,-94.4029	0/1:26:15,11:15:540:11:396:-27.9808,0,-41.1098	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.877	0/0:46:46,0:46:1628:0:0:0,-13.8474,-146.806	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:30:18,12:18:621:12:428:-29.8123,0,-47.1794	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:64:25,39:25:892:39:1404:-107.048,0,-61.3338	0/0:78:78,0:78:2787:0:0:0,-23.4803,-251.066	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:77:37,40:37:1317:40:1440:-105.068,0,-95.6505	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:80:37,43:37:1324:43:1544:-114.649,0,-95.3715	0/1:12:6,6:6:216:6:212:-15.4488,0,-16.1782	0/1:9:6,3:6:216:3:108:-7.36308,0,-17.0812	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:47:28,18:28:1004:18:648:-44.2304,0,-76.469	0/1:9:6,3:6:216:3:108:-7.35863,0,-17.0812	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.658	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.831	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.917	0/0:76:76,0:76:2705:0:0:0,-22.8783,-243.693	0/1:80:28,51:28:1000:51:1828:-140.007,0,-66.1745	0/0:28:26,2:26:932:2:72:0,-1.83649,-77.6065	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1179	0/1:51:24,27:24:864:27:968:-71.9902,0,-62.73	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9361	0/0:53:53,0:53:1870:0:0:0,-15.9546,-168.385	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/1:41:22,19:22:788:19:684:-47.3077,0,-58.8898	0/1:72:37,35:37:1320:35:1260:-91.1826,0,-97.4278	0/1:22:7,15:7:252:15:540:-41.66,0,-16.4063	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.061	0/0:86:86,0:86:3053:0:0:0,-25.8886,-274.995	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.393	0/1:36:19,17:19:672:17:612:-44.321,0,-49.9606	0/1:58:33,25:33:1184:25:900:-63.5981,0,-89.4086	0/1:77:38,39:38:1360:39:1404:-102.941,0,-99.5167	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9522	0/0:48:48,0:48:1719:0:0:0,-14.4494,-154.995	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:58:32,26:32:1137:26:936:-66.4615,0,-85.1772	0/1:84:50,34:50:1792:34:1224:-83.525,0,-136.276	0/1:26:15,11:15:540:11:392:-27.4567,0,-41.1098	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.468
chr03	9796116	.	C	T	13034.1	PASS	AB=0.509994;ABP=4.35574;AC=33;AF=0.175532;AN=188;AO=796;CIGAR=1X;DP=4340;DPB=4340;DPRA=1.05292;EPP=1731.5;EPPR=7209.41;GTI=0;LEN=1;MEANALT=1.02703;MQM=52.3153;MQMR=59.9165;NS=94;NUMALT=1;ODDS=2.81981;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28522;QR=126421;RO=3543;RPL=0;RPP=1731.5;RPPR=7201;RPR=796;RUN=1;SAF=796;SAP=1731.5;SAR=0;SRF=3542;SRP=7687.85;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:5,16:5:171:16:576:-44.8371,0,-9.40382	0/1:68:41,27:41:1467:27:968:-66.1097,0,-111.855	0/1:33:14,19:14:504:19:684:-50.9342,0,-35.7595	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.503	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:51:51,0:51:1820:0:0:0,-15.3525,-163.99	0/1:38:19,19:19:671:19:684:-49.9256,0,-49.2767	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.035	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/1:36:22,14:22:792:14:500:-34.1908,0,-60.7686	0/1:56:21,35:21:752:35:1252:-95.4239,0,-51.1486	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.194	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.813	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:81:80,1:80:2852:1:36:0,-20.7852,-253.32	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.602	0/1:48:15,33:15:532:33:1179:-90.2978,0,-33.7636	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/1:77:35,42:35:1252:42:1508:-111.923,0,-89.8058	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3101	0/1:59:29,30:29:1036:30:1072:-78.1465,0,-75.7931	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.937	0/1:7:2,5:2:68:5:180:-14.4214,0,-4.3505	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.105	0/1:8:6,2:6:203:2:72:-3.60092,0,-16.1929	0/0:101:101,0:101:3620:0:0:0,-30.404,-325.993	0/0:95:95,0:95:3373:0:0:0,-28.5978,-303.782	0/1:53:27,26:27:968:26:936:-67.8406,0,-71.4828	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:95:38,57:38:1360:57:2040:-153.404,0,-94.1027	0/1:25:15,10:15:540:10:360:-25.174,0,-41.4108	0/0:60:60,0:60:2131:0:0:0,-18.0618,-192.058	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:30:18,12:18:644:12:432:-30.1742,0,-49.2588	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.94	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/1:67:27,40:27:972:40:1440:-109.381,0,-67.6005	0/0:78:77,1:77:2756:1:36:0,-19.8872,-244.689	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:75:37,38:37:1319:38:1368:-99.429,0,-96.4339	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:76:33,42:33:1171:42:1485:-110.502,0,-82.7516	0/1:11:6,5:6:212:5:180:-12.7158,0,-16.1135	0/1:10:7,3:7:248:3:108:-7.06205,0,-19.6539	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/1:47:28,19:28:1008:19:680:-47.1653,0,-76.8879	0/1:9:6,3:6:216:3:108:-7.35863,0,-17.0812	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.609	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.087	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/1:80:29,51:29:1031:51:1836:-140.784,0,-69.0202	0/0:27:25,2:25:896:2:68:0,-1.7876,-74.6201	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5951	0/1:53:26,27:26:932:27:945:-69.3158,0,-68.2443	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.813	0/0:55:55,0:55:1945:0:0:0,-16.5566,-175.134	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.813	0/0:52:52,0:52:1834:0:0:0,-15.6536,-165.339	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.902	0/1:40:22,18:22:780:18:648:-44.4395,0,-58.469	0/1:69:35,34:35:1234:34:1224:-88.8553,0,-90.5916	0/1:22:7,15:7:252:15:534:-41.2507,0,-16.4063	0/0:64:64,0:64:2275:0:0:0,-19.2659,-205.012	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.895	0/0:84:84,0:84:2994:0:0:0,-25.2865,-269.562	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.321	0/1:36:19,17:19:654:17:612:-44.321,0,-48.3401	0/1:58:33,25:33:1167:25:896:-63.2542,0,-87.8767	0/1:74:37,37:37:1310:37:1328:-97.0795,0,-95.9239	0/0:25:24,1:24:860:1:36:0,-3.92747,-74.1154	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/1:60:34,26:34:1220:26:936:-65.8594,0,-92.045	0/1:84:51,33:51:1828:33:1188:-80.514,0,-139.514	0/1:26:15,11:15:527:11:387:-27.0032,0,-39.9334	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.104
chr03	10120566	.	T	A	28713.4	PASS	AB=0.560201;ABP=103.146;AC=32;AF=0.170213;AN=188;AO=1794;CIGAR=1X;DP=8411;DPB=8411;DPRA=1.27164;EPP=3769.43;EPPR=13731.7;GTI=2;LEN=1;MEANALT=1.02632;MQM=39.3255;MQMR=59.9648;NS=94;NUMALT=1;ODDS=0.373295;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63851;QR=236877;RO=6615;RPL=15;RPP=3769.43;RPPR=13731.7;RPR=1779;RUN=1;SAF=1794;SAP=3898.63;SAR=0;SRF=6615;SRP=14367.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:14,7:14:500:7:242:-14.9558,0,-39.0145	0/1:139:26,113:26:936:113:4011:-305.06,0,-42.7163	0/1:113:60,53:60:2152:53:1890:-129.115,0,-159.931	0/0:159:159,0:159:5704:0:0:0,-47.8638,-513.476	0/0:27:27,0:27:948:0:0:0,-8.12781,-85.6319	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.786	0/1:135:52,83:52:1853:83:2949:-213.989,0,-126.395	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.191	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.338	0/1:95:46,48:46:1656:48:1708:-118.247,0,-120.711	0/1:76:33,43:33:1184:43:1540:-111.573,0,-83.99	0/0:97:96,1:96:3452:1:25:0,-26.8189,-308.51	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:183:183,0:183:6559:0:0:0,-55.0885,-590.384	0/0:138:138,0:138:4940:0:0:0,-41.5421,-444.75	0/1:128:35,93:35:1256:93:3305:-243.798,0,-74.8134	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.48	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5288	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.123	0/1:308:128,180:128:4568:180:6389:-450.274,0,-318.567	0/0:205:205,0:205:7315:0:0:0,-61.7111,-658.399	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:241:129,112:129:4623:112:3958:-262.748,0,-343.684	0/0:139:134,5:134:4808:5:180:0,-26.6133,-417.644	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/1:16:4,12:4:129:12:424:-32.2591,0,-7.11118	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:6:3,3:3:108:3:108:-8.04605,0,-8.26899	0/0:195:195,0:195:6995:0:0:0,-58.7008,-629.611	0/0:133:130,3:130:4641:3:108:0,-30.3644,-408.179	0/1:59:22,37:22:788:37:1324:-96.5507,0,-53.484	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:134:54,80:54:1919:80:2859:-205.71,0,-132.648	0/1:24:12,12:12:432:12:432:-29.7768,0,-31.9965	0/0:162:162,0:162:5790:0:0:0,-48.7669,-521.214	0/0:43:42,1:42:1504:1:36:0,-9.52069,-132.231	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	0/1:65:45,20:45:1612:20:693:-39.2094,0,-125.646	0/0:109:108,0:108:3867:0:0:0,-32.5112,-347.862	0/0:191:191,0:191:6852:0:0:0,-57.4967,-616.748	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.607	0/1:175:77,98:77:2772:98:3462:-242.961,0,-197.04	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:158:89,69:89:3192:69:2448:-163.173,0,-239.94	0/0:91:91,0:91:3247:0:0:0,-27.3937,-292.451	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:126:71,55:71:2539:55:1960:-131.269,0,-190.831	0/1:4:2,2:2:72:2:68:-5.08843,0,-5.6326	0/1:10:7,3:7:252:3:108:-6.57578,0,-20.0187	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:67:67,0:67:2399:0:0:0,-20.169,-216.161	0/1:138:54,84:54:1940:84:3003:-213.249,0,-133.334	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:220:219,1:219:7843:1:36:0,-62.803,-702.313	0/0:191:191,0:191:6839:0:0:0,-57.4967,-615.579	0/0:83:82,1:82:2925:1:36:0,-21.5619,-260.06	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.413	0/0:151:151,0:151:5405:0:0:0,-45.4555,-486.579	0/1:122:56,66:56:2012:66:2345:-163.722,0,-144.627	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/1:82:24,58:24:864:58:2084:-151.513,0,-53.3981	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5561	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.147	0/0:122:122,0:122:4356:0:0:0,-36.7257,-392.214	0/0:146:146,0:146:5240:0:0:0,-43.9504,-471.73	0/1:141:55,86:55:1963:86:3084:-223.076,0,-134.494	0/1:109:56,53:56:2007:53:1884:-130.818,0,-148.09	0/1:21:12,9:12:432:9:320:-21.9174,0,-32.8996	0/0:96:96,0:96:3427:0:0:0,-28.8989,-308.644	0/0:133:133,0:133:4759:0:0:0,-40.037,-428.464	0/0:200:200,0:200:7138:0:0:0,-60.206,-642.347	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:62:29,33:29:1044:33:1188:-83.039,0,-75.6109	0/1:64:12,52:12:428:52:1855:-139.884,0,-19.5929	0/1:135:55,80:55:1980:80:2856:-201.172,0,-137.835	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:72:72,0:72:2564:0:0:0,-21.6742,-231.008	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:60:32,28:32:1148:28:1008:-69.019,0,-85.5634	0/1:151:85,66:85:3047:66:2364:-156.316,0,-228.995	0/1:63:19,44:19:684:44:1561:-113.349,0,-42.9254	0/0:154:154,0:154:5517:0:0:0,-46.3586,-496.648	0/0:93:93,0:93:3335:0:0:0,-27.9958,-300.36
chr03	10120588	.	A	G	27328.2	PASS	AB=0.554255;ABP=83.8302;AC=32;AF=0.170213;AN=188;AO=1764;CIGAR=1X;DP=8431;DPB=8431;DPRA=1.25565;EPP=3833.49;EPPR=14467.2;GTI=2;LEN=1;MEANALT=1.13514;MQM=39.2857;MQMR=59.9529;NS=94;NUMALT=1;ODDS=2.23574;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62619;QR=238383;RO=6661;RPL=1764;RPP=3833.49;RPPR=14467.2;RPR=0;RUN=1;SAF=1764;SAP=3833.49;SAR=0;SRF=6661;SRP=14467.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:14,6:14:504:6:212:-12.8187,0,-39.6775	0/1:138:26,112:26:928:112:3994:-303.595,0,-42.2961	0/1:108:61,47:61:2188:47:1651:-110.298,0,-164.674	0/0:160:160,0:160:5716:0:0:0,-48.1648,-514.559	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:84:84,0:84:2988:0:0:0,-25.2865,-269.154	0/1:131:51,80:51:1828:80:2826:-204.773,0,-125.339	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.173	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.089	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:93:47,46:47:1684:46:1619:-111.115,0,-123.851	0/1:76:33,43:33:1180:43:1519:-109.509,0,-83.6298	0/0:99:99,0:99:3539:0:0:0,-29.802,-318.092	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:184:184,0:184:6604:0:0:0,-55.3895,-594.432	0/0:141:141,0:141:5039:0:0:0,-42.4452,-453.656	0/1:128:34,92:34:1224:92:3281:-241.222,0,-72.1774	0/0:93:93,0:93:3316:0:0:0,-27.9958,-298.644	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.403	0/1:306:130,176:130:4660:176:6288:-442.839,0,-327.446	0/0:207:207,0:207:7408:0:0:0,-62.3132,-666.766	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:239:131,107:131:4692:107:3831:-251.546,0,-350.453	0/0:142:137,5:137:4924:5:180:0,-27.5164,-428.079	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/1:16:4,12:4:144:12:428:-32.5483,0,-8.49714	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/1:6:3,3:3:108:3:108:-8.04951,0,-8.26553	0/0:195:195,0:195:7004:0:0:0,-58.7008,-630.42	0/0:131:128,3:128:4587:3:104:0,-30.0595,-403.618	0/1:59:22,36:22:776:36:1279:-92.651,0,-52.3541	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:139:54,85:54:1923:85:3024:-218.628,0,-131.503	0/1:24:12,12:12:419:12:432:-29.7768,0,-30.818	0/0:165:165,0:165:5912:0:0:0,-49.6699,-532.188	0/0:44:43,1:43:1540:1:36:0,-9.82172,-135.469	0/0:45:45,0:45:1587:0:0:0,-13.5463,-143.12	0/1:63:44,19:44:1569:19:668:-37.6598,0,-122.377	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.551	0/0:194:194,0:194:6947:0:0:0,-58.3998,-625.209	0/0:98:98,0:98:3497:0:0:0,-29.5009,-314.94	0/1:180:77,103:77:2764:103:3677:-259.568,0,-194.816	0/0:112:112,0:112:3991:0:0:0,-33.7154,-359.381	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:157:89,68:89:3188:68:2426:-161.931,0,-239.882	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.753	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/1:126:71,55:71:2544:55:1953:-130.801,0,-191.281	0/1:4:2,2:2:72:2:72:-5.37587,0,-5.6326	0/1:10:7,3:7:252:3:104:-6.29339,0,-20.0187	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.565	0/1:135:54,81:54:1932:81:2847:-202.698,0,-133.518	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:225:224,1:224:7989:1:36:0,-64.3081,-715.445	0/0:190:190,0:190:6824:0:0:0,-57.1957,-614.228	0/0:83:81,2:81:2899:2:72:0,-18.3147,-254.474	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.734	0/0:152:152,0:152:5421:0:0:0,-45.7566,-488.02	0/1:123:55,67:55:1972:67:2374:-165.573,0,-140.669	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/1:81:25,56:25:891:56:1977:-143.088,0,-56.1253	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.386	0/0:126:126,0:126:4501:0:0:0,-37.9298,-405.244	0/0:144:144,0:144:5137:0:0:0,-43.3483,-462.471	0/1:138:54,83:54:1935:83:2963:-213.742,0,-132.823	0/1:108:56,52:56:1996:52:1821:-126.146,0,-147.403	0/1:21:12,9:12:432:9:324:-22.2201,0,-32.8996	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:132:132,0:132:4707:0:0:0,-39.736,-423.788	0/0:199:199,0:199:7132:0:0:0,-59.905,-641.801	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:63:29,34:29:1025:34:1190:-83.3451,0,-73.5958	0/1:63:12,51:12:432:51:1801:-135.285,0,-20.2563	0/1:133:55,78:55:1971:78:2728:-192.596,0,-137.627	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:59:32,27:32:1135:27:964:-65.997,0,-84.6927	0/1:153:87,66:87:3128:66:2335:-153.927,0,-235.675	0/1:61:20,41:20:716:41:1475:-106.956,0,-46.4049	0/0:156:156,0:156:5577:0:0:0,-46.9607,-502.047	0/0:95:95,0:95:3397:0:0:0,-28.5978,-305.943
chr03	10120681	.	T	A	132369	PASS	AB=0.47417;ABP=19.949;AC=155;AF=0.824468;AN=188;AO=6411;CIGAR=1X;DP=7984;DPB=7984;DPRA=42.914;EPP=13924.3;EPPR=3418.74;GTI=3;LEN=1;MEANALT=1;MQM=41.0724;MQMR=45.6484;NS=94;NUMALT=1;ODDS=1.04287;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229516;QR=56170;RO=1573;RPL=6386;RPP=13708;RPPR=3392.73;RPR=25;RUN=1;SAF=25;SAP=13708;SAR=6386;SRF=3;SRP=3392.73;SRR=1570;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:23,42:23:824:42:1504:-110.297,0,-53.878	0/1:61:27,34:27:957:34:1220:-85.5255,0,-67.359	0/1:155:97,58:97:3476:58:2088:-135.401,0,-261.646	1/1:243:0,243:0:0:243:8708:-750.482,-73.1503,0	1/1:73:2,71:2:72:71:2556:-212.661,-15.2138,0	1/1:53:0,53:0:0:53:1892:-163.887,-15.9546,0	1/1:96:0,96:0:0:96:3428:-296.283,-28.8989,0	0/1:127:65,62:65:2324:62:2216:-153.485,0,-168.668	1/1:83:0,83:0:0:83:2960:-255.011,-24.9855,0	1/1:56:0,56:0:0:56:2016:-174.048,-16.8577,0	1/1:27:2,25:2:72:25:896:-71.0415,-1.38563,0	0/1:103:46,57:46:1644:57:2040:-147.052,0,-115.282	0/1:83:45,38:45:1612:38:1360:-93.8027,0,-118.899	1/1:60:0,60:0:0:60:2152:-185.958,-18.0618,0	1/1:88:1,87:1:36:87:3100:-262.263,-22.9421,0	1/1:59:0,59:0:0:59:2116:-183.317,-17.7608,0	1/1:53:1,52:1:36:52:1856:-156.738,-12.3878,0	1/1:29:0,29:0:0:29:1040:-90.2414,-8.72987,0	1/1:14:0,14:0:0:14:504:-42.9243,-4.21442,0	1/1:83:1,82:1:36:82:2940:-250.452,-21.437,0	1/1:150:1,149:1:36:149:5348:-458.476,-41.5959,0	0/1:142:115,27:115:4093:27:968:-43.3224,0,-320.218	1/1:95:1,94:1:36:94:3372:-287.601,-25.0493,0	1/1:79:0,79:0:0:79:2832:-243.572,-23.7814,0	1/1:71:1,70:1:21:70:2504:-214.652,-19.2745,0	0/1:262:116,146:116:4153:146:5224:-385.077,0,-289.541	1/1:176:0,176:0:0:176:6308:-542.898,-52.9813,0	1/1:31:1,30:1:36:30:1076:-88.6999,-5.77331,0	0/1:306:155,151:155:5518:151:5397:-387.151,0,-397.039	1/1:142:0,142:0:0:142:5076:-435.301,-42.7463,0	1/1:110:0,110:0:0:110:3912:-336.791,-33.1133,0	0/1:8:3,5:3:108:5:176:-12.682,0,-7.55589	1/1:3:0,3:0:0:3:104:-9.37545,-0.90309,0	1/1:4:0,4:0:0:4:144:-12.8786,-1.20412,0	1/1:7:0,7:0:0:7:252:-22.2764,-2.10721,0	0/1:15:13,2:13:464:2:68:-1.78232,0,-37.2277	1/1:236:1,235:1:36:235:8420:-744.214,-67.4517,0	1/1:118:1,117:1:36:117:4188:-356.934,-31.9629,0	0/1:40:22,18:22:784:18:640:-44.1216,0,-57.0853	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	0/1:112:59,53:59:2116:53:1904:-130.648,0,-154.177	0/1:16:11,5:11:396:5:180:-11.0983,0,-30.3743	1/1:177:0,177:0:0:177:6344:-544.841,-53.2823,0	1/1:65:0,65:0:0:65:2332:-201.212,-19.567,0	1/1:61:3,58:3:108:58:2076:-169.976,-8.42699,0	0/1:108:63,45:63:2264:45:1612:-109.207,0,-168.196	1/1:98:0,98:0:0:98:3516:-303.101,-29.5009,0	1/1:151:0,151:0:0:151:5392:-465.048,-45.4555,0	1/1:79:0,79:0:0:79:2828:-243.619,-23.7814,0	0/1:95:49,46:49:1718:46:1648:-113.875,0,-124.239	1/1:133:0,133:0:0:133:4768:-422.792,-40.037,0	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	0/1:101:63,38:63:2253:38:1360:-87.8625,0,-170.568	1/1:48:1,47:1:36:47:1684:-146.854,-10.858,0	1/1:14:0,14:0:0:14:504:-44.2048,-4.21442,0	0/1:115:46,69:46:1648:69:2480:-178.179,0,-112.374	0/1:51:28,23:28:1004:23:828:-56.891,0,-73.1291	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.39933	1/1:6:0,6:0:0:6:216:-19.6175,-1.80618,0	1/1:76:0,76:0:0:76:2689:-232.556,-22.8783,0	0/1:90:40,50:40:1440:50:1788:-127.945,0,-99.9344	1/1:3:0,3:0:0:3:108:-9.67257,-0.90309,0	1/1:193:0,193:0:0:193:6912:-613.108,-58.0988,0	1/1:155:4,151:4:129:151:5392:-451.374,-34.8716,0	1/1:68:2,66:2:72:66:2368:-198.218,-13.7087,0	1/1:63:1,62:1:21:62:2190:-186.57,-16.8666,0	1/1:128:0,128:0:0:128:4561:-394.02,-38.5318,0	0/1:95:67,28:67:2389:28:1008:-57.5027,0,-183.828	1/1:27:0,27:0:0:27:972:-84.3568,-8.12781,0	1/1:41:0,41:0:0:41:1468:-128.186,-12.3422,0	0/1:61:25,36:25:888:36:1296:-97.583,0,-60.866	1/1:14:0,14:0:0:14:500:-43.5832,-4.21442,0	1/1:121:1,120:1:36:120:4296:-369.427,-32.8578,0	1/1:96:0,96:0:0:96:3444:-298.559,-28.8989,0	1/1:123:0,123:0:0:123:4392:-378.906,-37.0267,0	1/1:115:2,113:2:72:113:4044:-342.311,-27.8763,0	0/1:148:76,72:76:2705:72:2584:-179.19,0,-196.581	0/1:60:26,34:26:921:34:1224:-88.0528,0,-63.6808	0/1:9:5,4:5:180:4:144:-10.1693,0,-13.7091	1/1:44:0,44:0:0:44:1576:-137.775,-13.2453,0	1/1:98:0,98:0:0:98:3516:-306.113,-29.5009,0	1/1:162:0,162:0:0:162:5792:-499.178,-48.7669,0	1/1:64:0,64:0:0:64:2304:-198.413,-19.2659,0	0/1:77:45,32:45:1616:32:1152:-76.0503,0,-120.404	0/1:48:23,25:23:828:25:900:-62.8123,0,-58.9538	0/1:136:53,83:53:1900:83:2976:-214.501,0,-127.975	1/1:15:0,15:0:0:15:536:-47.1429,-4.51545,0	1/1:72:1,71:1:36:71:2548:-217.544,-18.1073,0	1/1:78:1,77:1:36:77:2751:-235.604,-19.9135,0	0/1:45:20,25:20:716:25:896:-63.6553,0,-50.2525	0/1:111:64,47:64:2292:47:1684:-110.616,0,-169.591	0/1:78:47,31:47:1688:31:1112:-72.3368,0,-126.688	1/1:135:0,135:0:0:135:4816:-415.269,-40.6391,0	1/1:95:5,90:5:180:90:3232:-261.862,-12.2747,0
chr03	10742605	.	GT	AT,AC	154597	PASS	AB=0.461831,0.53627;ABP=36.3296,33.0967;AC=150,32;AF=0.824176,0.175824;AN=182;AO=5654,1417;CIGAR=1X1M,2X;DP=7083;DPB=7084;DPRA=0,1.09301;EPP=12280.5,3079.99;EPPR=11.6962;GTI=1;LEN=1,2;MEANALT=1.48352,2.08333;MQM=59.9864,59.9922;MQMR=60;NS=91;NUMALT=2;ODDS=1.38899;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,68;PQR=0;PRO=0;QA=201977,50224;QR=133;RO=4;RPL=0,0;RPP=12280.5,3079.99;RPPR=11.6962;RPR=5654,1417;RUN=1,1;SAF=5654,1417;SAP=12280.5,3079.99;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,16,27:0:0:16,27:572,962:-125.409,-78.7688,-73.9524,-46.9969,0,-38.8691	1/2:64:0,31,33:0:0:31,33:1112,1156:-185.115,-94.4097,-85.0777,-91.0594,0,-81.1254	1/2:104:0,59,45:0:0:59,45:2104,1610:-303.155,-131.644,-113.883,-171.869,0,-158.322	1/1:113:0,113,0:0:0:113,0:4021,0:-362.079,-34.0164,0,-362.079,-34.0164,-362.079	1/1:69:0,69,0:0:0:69,0:2452,0:-220.936,-20.7711,0,-220.936,-20.7711,-220.936	1/1:37:0,37,0:0:0:37,0:1320,0:-119.102,-11.1381,0,-119.102,-11.1381,-119.102	1/1:30:0,30,0:0:0:30,0:1053,0:-95.0784,-9.0309,0,-95.0784,-9.0309,-95.0784	1/2:122:0,67,55:0:0:67,55:2409,1953:-356.028,-159.488,-139.319,-196.897,0,-180.34	1/1:113:1,112,0:1:25:112,0:3986,0:-356.431,-31.5165,0,-356.732,-33.7154,-358.68	1/1:87:0,87,0:0:0:87,0:3093,0:-278.597,-26.1896,0,-278.597,-26.1896,-278.597	1/1:64:0,64,0:0:0:64,0:2276,0:-205.101,-19.2659,0,-205.101,-19.2659,-205.101	1/2:121:1,61,59:1:36:61,59:2188,2122:-348.353,-170.19,-154.765,-175.526,0,-160.702	1/2:81:0,42,39:0:0:42,39:1512,1402:-238.111,-114.739,-102.096,-123.731,0,-111.991	1/1:74:0,74,0:0:0:74,0:2656,0:-239.286,-22.2762,0,-239.286,-22.2762,-239.286	1/1:72:0,72,0:0:0:72,0:2584,0:-232.809,-21.6742,0,-232.809,-21.6742,-232.809	1/1:75:0,75,0:0:0:75,0:2688,0:-242.165,-22.5773,0,-242.165,-22.5773,-242.165	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6759,-8.42884,0,-90.6759,-8.42884,-90.6759	1/1:25:0,25,0:0:0:25,0:888,0:-80.239,-7.52575,0,-80.239,-7.52575,-80.239	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/1:113:0,113,0:0:0:113,0:4015,0:-361.54,-34.0164,0,-361.54,-34.0164,-361.54	1/1:183:0,183,0:0:0:183,0:6545,0:-589.131,-55.0885,0,-589.131,-55.0885,-589.131	1/2:59:0,19,40:0:0:19,40:680,1432:-172.589,-117.137,-111.417,-55.8096,0,-43.7684	1/1:98:0,98,0:0:0:98,0:3512,0:-316.29,-29.5009,0,-316.29,-29.5009,-316.29	1/1:26:0,26,0:0:0:26,0:924,0:-83.4777,-7.82678,0,-83.4777,-7.82678,-83.4777	1/1:90:0,90,0:0:0:90,0:3211,0:-289.166,-27.0927,0,-289.166,-27.0927,-289.166	1/2:149:0,62,87:0:0:62,87:2212,3052:-429.046,-248.719,-230.055,-180.681,0,-154.492	1/1:202:0,202,0:0:0:202,0:7222,0:-650.034,-60.8081,0,-650.034,-60.8081,-650.034	1/1:36:0,35,0:0:0:35,0:1252,0:-112.703,-10.5361,0,-112.703,-10.5361,-112.703	1/2:153:0,64,89:0:0:64,89:2276,3149:-442.325,-256.843,-237.577,-185.837,0,-159.045	1/2:62:0,51,11:0:0:51,11:1822,385:-180.23,-31.6729,-16.3203,-148.908,0,-145.597	1/1:82:0,81,0:0:0:81,0:2859,0:-257.185,-24.3834,0,-257.185,-24.3834,-257.185	1/2:3:0,2,1:0:0:2,1:68,36:-8.79971,-3.29724,-2.69518,-5.85565,0,-5.55462	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:236:0,236,0:0:0:236,0:8437,0:-759.333,-71.0431,0,-759.333,-71.0431,-759.333	1/1:61:0,61,0:0:0:61,0:2173,0:-195.835,-18.3628,0,-195.835,-18.3628,-195.835	1/2:57:0,22,35:0:0:22,35:780,1243:-165.183,-101.638,-95.0151,-63.9004,0,-53.3643	.:.:.:.:.:.:.:.	1/2:131:0,49,82:0:0:49,82:1748,2923:-381.111,-238.619,-223.869,-142.849,0,-118.164	1/2:31:0,16,15:0:0:16,15:576,528:-90.3384,-43.3356,-38.5191,-47.3585,0,-42.8431	1/1:118:0,118,0:0:0:118,0:4216,0:-379.621,-35.5215,0,-379.621,-35.5215,-379.621	1/1:60:0,60,0:0:0:60,0:2156,0:-194.307,-18.0618,0,-194.307,-18.0618,-194.307	1/1:72:0,72,0:0:0:72,0:2579,0:-232.358,-21.6742,0,-232.358,-21.6742,-232.358	1/2:133:0,72,61:0:0:72,61:2549,2149:-382.943,-175.31,-153.635,-207.986,0,-189.623	1/1:94:0,94,0:0:0:94,0:3360,0:-302.617,-28.2968,0,-302.617,-28.2968,-302.617	1/1:104:0,104,0:0:0:104,0:3732,0:-336.08,-31.3071,0,-336.08,-31.3071,-336.08	1/1:85:0,85,0:0:0:85,0:3036,0:-273.471,-25.5876,0,-273.471,-25.5876,-273.471	1/2:64:0,25,39:0:0:25,39:885,1402:-186.824,-114.739,-107.213,-72.4408,0,-60.7006	1/1:105:0,105,0:0:0:105,0:3732,0:-336.083,-31.6082,0,-336.083,-31.6082,-336.083	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:133:0,45,88:0:0:45,88:1616,3088:-383.124,-251.296,-237.75,-131.824,0,-105.333	1/1:18:0,17,0:0:0:17,0:604,0:-54.4348,-5.11751,0,-54.4348,-5.11751,-54.4348	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:110:0,49,60:0:0:49,60:1760,2118:-316.043,-172.466,-157.715,-143.574,0,-125.512	1/2:70:0,26,44:0:0:26,44:909,1561:-201.48,-127.535,-119.708,-74.2966,0,-61.0513	.:.:.:.:.:.:.:.	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.8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chr03	10967105	.	TTC	TTT	84651.7	PASS	AB=0.489349;ABP=4.67552;AC=157;AF=0.835106;AN=188;AO=3906;CIGAR=2M1X;DP=4790;DPB=4790;DPRA=0;EPP=8484.78;EPPR=1883.51;GTI=2;LEN=1;MEANALT=1.14894;MQM=59.9183;MQMR=59.9619;NS=94;NUMALT=1;ODDS=0.128888;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139408;QR=29580;RO=866;RPL=3906;RPP=8484.78;RPPR=1883.51;RPR=0;RUN=1;SAF=3906;SAP=8484.78;SAR=0;SRF=866;SRP=1883.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:23,24:23:754:24:864:-63.9342,0,-54.015	0/1:34:7,27:7:243:27:964:-76.8134,0,-11.9725	0/1:84:52,32:52:1816:32:1144:-77.983,0,-138.433	1/1:68:0,68:0:0:68:2431:-219.045,-20.47,0	1/1:28:0,25:0:0:25:892:-80.2521,-7.52575,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:47:28,19:28:968:19:676:-47.0196,0,-73.2807	1/1:85:0,85:0:0:85:3038:-273.613,-25.5876,0	1/1:43:0,43:0:0:43:1539:-138.803,-12.9443,0	1/1:28:0,28:0:0:28:999:-90.2222,-8.42884,0	0/1:58:30,28:30:1045:28:995:-72.4043,0,-76.8977	0/1:48:31,17:31:1064:17:608:-40.6026,0,-81.6172	1/1:29:0,29:0:0:29:1027:-92.7413,-8.72987,0	1/1:50:1,48:1:31:48:1728:-152.752,-11.911,0	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:89:0,89:0:0:89:3157:-284.353,-26.7917,0	1/1:93:0,93:0:0:93:3327:-299.647,-27.9958,0	0/1:51:35,16:35:1205:16:559:-35.2851,0,-93.3952	1/1:57:0,56:0:0:56:1993:-179.43,-16.8577,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	0/1:168:94,74:94:3244:74:2642:-187.453,0,-241.614	1/1:159:0,158:0:0:158:5637:-507.089,-47.5627,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:156:85,70:85:2852:70:2499:-178.143,0,-209.896	1/1:59:2,56:2:70:56:2004:-174.018,-11.0957,0	1/1:52:0,51:0:0:51:1809:-162.877,-15.3525,0	0/1:8:3,5:3:106:5:180:-14.1438,0,-7.48086	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:0,12:0:0:12:427:-38.7681,-3.61236,0	0/1:16:6,10:6:189:10:352:-27.2011,0,-12.5035	1/1:110:1,108:1:36:108:3848:-342.996,-29.4939,0	1/1:81:0,81:0:0:81:2895:-260.786,-24.3834,0	0/1:17:8,9:8:269:9:320:-24.0248,0,-19.42	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:49:25,24:25:856:24:864:-63.3321,0,-62.6008	0/1:16:11,5:11:375:5:180:-11.7356,0,-29.261	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	1/1:25:0,25:0:0:25:876:-79.1543,-7.52575,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:79:33,45:33:1147:45:1603:-120.718,0,-79.693	1/1:66:0,66:0:0:66:2356:-212.298,-19.868,0	1/1:155:0,151:0:0:151:5415:-487.14,-45.4555,0	1/1:66:0,66:0:0:66:2360:-212.621,-19.868,0	0/1:63:25,37:25:870:37:1327:-100.854,0,-59.7349	1/1:54:0,54:0:0:54:1938:-174.659,-16.2556,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:87:42,45:42:1452:45:1589:-117.101,0,-104.782	1/1:66:0,66:0:0:66:2367:-213.287,-19.868,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:94:37,57:37:1254:57:2036:-155.019,0,-84.8122	0/1:20:8,12:8:255:12:432:-33.2006,0,-17.2414	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:28:1,27:1:34:27:968:-84.0385,-5.02993,0	0/1:63:37,26:37:1261:26:932:-65.234,0,-94.8209	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:123:0,123:0:0:123:4358:-392.023,-37.0267,0	1/1:86:1,85:1:28:85:3033:-270.396,-23.0889,0	1/1:27:0,27:0:0:27:964:-86.2972,-8.12781,0	1/1:52:0,52:0:0:52:1848:-166.597,-15.6536,0	1/1:92:0,92:0:0:92:3299:-297.127,-27.6948,0	0/1:106:59,47:59:2023:47:1688:-120.295,0,-150.431	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:50:0,50:0:0:50:1792:-161.552,-15.0515,0	0/1:29:13,16:13:443:16:576:-43.4451,0,-31.4648	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:77:0,77:0:0:77:2727:-245.671,-23.1793,0	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:54:0,54:0:0:54:1923:-173.346,-16.2556,0	1/1:67:0,67:0:0:67:2407:-216.886,-20.169,0	0/1:73:42,31:42:1419:31:1101:-77.424,0,-106.024	0/1:21:5,16:5:162:16:576:-45.8534,0,-8.57769	0/1:5:1,4:1:21:4:144:-11.8085,0,-0.594796	1/1:51:0,51:0:0:51:1812:-163.336,-15.3525,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:215:0,215:0:0:215:7634:-687.052,-64.7215,0	1/1:40:0,39:0:0:39:1392:-125.357,-11.7402,0	0/1:30:14,16:14:494:16:576:-43.1441,0,-35.7619	0/1:18:11,7:11:357:7:252:-17.6104,0,-27.026	0/1:80:36,44:36:1254:44:1574:-117.868,0,-89.0783	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:54:1,53:1:34:53:1854:-163.737,-12.8567,0	0/1:14:5,9:5:170:9:316:-24.5644,0,-11.4201	0/1:77:28,48:28:919:48:1706:-130.586,0,-59.7733	0/1:32:25,7:25:860:7:252:-13.396,0,-68.0807	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:74:0,74:0:0:74:2647:-238.474,-22.2762,0
chr03	11056885	.	C	A	170487	PASS	AB=0.527327;ABP=24.6103;AC=155;AF=0.824468;AN=188;AO=7918;CIGAR=1X;DP=9511;DPB=9511;DPRA=102.258;EPP=17170.7;EPPR=3438.29;GTI=1;LEN=1;MEANALT=1.06452;MQM=59.9049;MQMR=59.9489;NS=94;NUMALT=1;ODDS=2.13748;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=280453;QR=56027;RO=1586;RPL=1;RPP=17188;RPPR=3446.97;RPR=7917;RUN=1;SAF=4;SAP=17162;SAR=7914;SRF=1;SRP=3438.29;SRR=1585;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:5,12:5:180:12:417:-32.7418,0,-11.4346	0/1:82:40,42:40:1427:42:1479:-108.697,0,-103.264	0/1:202:96,106:96:3408:106:3761:-277.88,0,-246.126	1/1:57:1,56:1:36:56:1993:-176.039,-13.5604,0	1/1:24:0,24:0:0:24:854:-77.1805,-7.22472,0	1/1:16:0,16:0:0:16:552:-50.0029,-4.81648,0	1/1:376:2,373:2:72:373:13225:-1183.2,-106.409,0	0/1:116:55,61:55:1944:61:2126:-156.687,0,-140.3	1/1:85:0,85:0:0:85:3001:-270.314,-25.5876,0	1/1:139:0,139:0:0:139:4972:-447.62,-41.8432,0	1/1:185:0,185:0:0:185:6581:-592.368,-55.6906,0	0/1:57:31,26:31:1076:26:923:-66.2281,0,-79.9861	0/1:130:54,76:54:1886:76:2691:-203.297,0,-130.867	1/1:94:0,93:0:0:93:3280:-295.101,-27.9958,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:106:0,104:0:0:104:3682:-331.245,-31.3071,0	1/1:156:0,156:0:0:156:5478:-493.144,-46.9607,0	1/1:84:0,83:0:0:83:2940:-264.264,-24.9855,0	1/1:103:1,102:1:36:102:3578:-318.63,-27.4078,0	1/1:59:0,59:0:0:59:2098:-189.088,-17.7608,0	1/1:88:0,88:0:0:88:3137:-282.555,-26.4906,0	0/1:105:69,36:69:2454:36:1292:-84.9756,0,-189.506	1/1:70:0,70:0:0:70:2497:-224.976,-21.0721,0	1/1:200:1,198:1:36:198:7054:-631.324,-56.6665,0	1/1:50:0,50:0:0:50:1755:-158.23,-15.0515,0	0/1:128:51,77:51:1811:77:2760:-210.11,0,-124.739	1/1:127:0,127:0:0:127:4450:-400.672,-38.2308,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:73:44,29:44:1565:29:1017:-69.8655,0,-119.164	1/1:92:4,88:4:144:88:3103:-266.185,-14.3811,0	1/1:68:0,68:0:0:68:2419:-217.966,-20.47,0	0/1:21:8,13:8:280:13:464:-35.7759,0,-19.2177	1/1:16:0,16:0:0:16:557:-50.4556,-4.81648,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:178:0,178:0:0:178:6266:-564.04,-53.5833,0	1/1:69:0,69:0:0:69:2449:-220.656,-20.7711,0	0/1:71:27,44:27:933:44:1556:-118.92,0,-62.9072	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:29:13,16:13:460:16:554:-41.4538,0,-33.0055	0/1:40:17,23:17:603:23:812:-61.3597,0,-42.5583	1/1:30:0,30:0:0:30:1044:-94.2669,-9.0309,0	1/1:150:2,148:2:68:148:5238:-465.103,-38.6968,0	1/1:53:0,53:0:0:53:1881:-169.568,-15.9546,0	0/1:88:29,59:29:1019:59:2073:-160.219,0,-65.5307	1/1:27:0,27:0:0:27:951:-85.9033,-8.12781,0	1/1:95:0,95:0:0:95:3336:-300.442,-28.5979,0	1/1:373:0,373:0:0:373:13228:-1190.29,-112.284,0	0/1:600:291,309:291:10332:309:10898:-799.869,0,-749.169	1/1:344:0,344:0:0:344:12217:-1098.09,-103.554,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:22:8,14:8:284:14:500:-38.7135,0,-19.2807	1/1:38:0,38:0:0:38:1341:-120.988,-11.4391,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:34:8,26:8:284:26:909:-71.8838,0,-15.6683	0/1:110:42,68:42:1508:68:2427:-185.571,0,-102.901	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:139:0,139:0:0:139:4934:-444.214,-41.8432,0	0/1:65:26,39:26:932:39:1400:-106.732,0,-64.6319	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:63:0,63:0:0:63:2237:-201.593,-18.9649,0	1/1:191:0,191:0:0:191:6800:-612.072,-57.4967,0	1/1:133:1,132:1:36:132:4685:-418.216,-36.4387,0	1/1:73:0,73:0:0:73:2593:-233.617,-21.9752,0	1/1:214:0,214:0:0:214:7577:-681.964,-64.4204,0	0/1:50:25,25:25:879:25:874:-63.9237,0,-64.3753	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:259:0,259:0:0:259:9185:-826.541,-77.9668,0	0/1:59:12,47:12:420:47:1667:-132.498,0,-20.3733	1/1:60:0,60:0:0:60:2131:-192.058,-18.0618,0	1/1:108:0,108:0:0:108:3825:-344.449,-32.5112,0	1/1:160:0,160:0:0:160:5654:-508.982,-48.1648,0	1/1:65:0,65:0:0:65:2268:-204.375,-19.567,0	1/1:32:0,32:0:0:32:1144:-103.251,-9.63296,0	0/1:120:60,60:60:2147:60:2135:-156.294,0,-157.373	0/1:81:31,50:31:1088:50:1775:-135.459,0,-73.843	0/1:31:26,5:26:928:5:180:-7.22014,0,-74.5063	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:117:0,117:0:0:117:4164:-374.943,-35.2205,0	1/1:52:0,52:0:0:52:1841:-165.969,-15.6536,0	1/1:119:0,119:0:0:119:4185:-376.537,-35.8226,0	0/1:32:17,14:17:603:14:504:-36.0063,0,-44.908	0/1:170:60,110:60:2068:110:3912:-301.101,0,-135.212	0/1:104:36,68:36:1243:68:2397:-184.68,0,-80.8608	1/1:40:0,40:0:0:40:1416:-127.737,-12.0412,0	1/1:74:0,74:0:0:74:2618:-235.868,-22.2762,0	1/1:472:0,472:0:0:472:16737:-1504.69,-142.086,0	0/1:93:31,62:31:1103:62:2206:-170.797,0,-71.584	0/1:85:39,46:39:1368:46:1623:-120.771,0,-97.8282	0/1:510:320,190:320:11258:190:6698:-449.37,0,-859.596	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:69:0,69:0:0:69:2463:-221.924,-20.7711,0
chr03	11258347	.	G	T	64511.1	PASS	AB=0.357699;ABP=2351.43;AC=93;AF=0.494681;AN=188;AO=4776;CIGAR=1X;DP=13357;DPB=13357;DPRA=28.714;EPP=10374;EPPR=1344.44;GTI=1;LEN=1;MEANALT=1.29032;MQM=45.5819;MQMR=49.5694;NS=94;NUMALT=1;ODDS=70.4221;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170521;QR=304648;RO=8541;RPL=0;RPP=10374;RPPR=18117.8;RPR=4776;RUN=1;SAF=0;SAP=10374;SAR=4776;SRF=3170;SRP=1234.66;SRR=5371;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:139:59,80:59:2108:80:2864:-211.206,0,-145.288	0/1:142:75,67:75:2681:67:2404:-171.698,0,-193.828	0/1:203:124,79:124:4430:79:2828:-189.257,0,-334.792	0/1:201:144,57:144:5136:57:2048:-121.208,0,-392.31	0/1:142:78,63:78:2804:63:2264:-157.886,0,-207.237	0/1:155:75,77:75:2677:77:2741:-196.139,0,-193.143	0/1:136:64,72:64:2292:72:2560:-185.386,0,-160.363	0/1:276:166,110:166:5922:110:3929:-265.209,0,-446.632	0/1:140:100,40:100:3557:40:1424:-84.4733,0,-272.954	0/1:108:43,65:43:1533:65:2315:-173.916,0,-100.555	0/1:149:130,19:130:4620:19:680:-14.8314,0,-365.207	0/1:285:178,107:178:6294:107:3806:-250.506,0,-471.24	0/1:205:169,36:169:6031:36:1275:-50.2456,0,-473.114	0/1:252:184,67:184:6545:67:2404:-136.475,0,-503.39	0/1:152:127,25:127:4553:25:892:-33.2416,0,-351.798	0/1:178:128,49:128:4576:49:1760:-102.819,0,-348.772	0/1:125:95,30:95:3351:30:1080:-58.0401,0,-256.893	0/1:136:106,30:106:3771:30:1080:-55.2247,0,-290.927	0/1:86:68,18:68:2432:18:636:-30.9478,0,-189.836	0/1:92:42,50:42:1500:50:1796:-132.062,0,-105.426	0/1:186:122,64:122:4375:64:2284:-147.169,0,-335.977	0/1:73:27,46:27:968:46:1636:-122.952,0,-64.6207	0/1:145:56,88:56:1993:88:3160:-236.994,0,-133.384	0/1:146:94,52:94:3333:52:1868:-122.493,0,-252.603	0/1:104:69,34:69:2459:34:1216:-76.5699,0,-184.616	0/1:198:134,64:134:4785:64:2273:-140.162,0,-368.541	0/1:236:139,97:139:4975:97:3440:-234.569,0,-369.765	0/1:107:73,32:73:2605:32:1148:-69.6354,0,-195.63	0/1:174:105,69:105:3751:69:2472:-164.625,0,-283.28	0/1:132:81,49:81:2891:49:1756:-116.929,0,-218.448	0/1:188:127,60:127:4535:60:2130:-130.931,0,-343.313	0/1:4:1,3:1:36:3:108:-8.83803,0,-2.39415	0/1:7:4,3:4:140:3:108:-7.93494,0,-10.7481	0/1:4:2,2:2:72:2:72:-5.06878,0,-5.60694	0/1:19:6,13:6:212:13:468:-36.3127,0,-13.7052	0/1:6:5,1:5:180:1:36:-1.74234,0,-14.0696	0/1:608:432,176:432:15436:176:6304:-364.91,0,-1182.43	0/1:104:49,55:49:1749:55:1960:-141.936,0,-124.273	0/1:175:122,52:122:4368:52:1855:-110.938,0,-334.741	0/1:4:3,1:3:108:1:36:-2.38236,0,-8.85684	0/1:124:78,46:78:2791:46:1635:-108.475,0,-206.586	0/1:84:63,19:63:2264:19:679:-35.1813,0,-174.161	0/1:215:104,110:104:3713:110:3944:-285.006,0,-263.666	0/1:195:147,48:147:5245:48:1724:-93.024,0,-398.111	0/1:145:99,46:99:3529:46:1629:-100.901,0,-268.919	0/1:91:50,41:50:1777:41:1457:-99.9029,0,-131.779	0/1:123:68,54:68:2423:54:1936:-135.306,0,-176.832	0/1:196:142,54:142:5037:54:1932:-113.064,0,-387.424	0/1:77:53,24:53:1900:24:860:-53.5703,0,-143.903	0/1:146:105,40:105:3743:40:1405:-79.0912,0,-287.486	0/1:91:25,66:25:900:66:2352:-179.638,0,-51.5745	0/1:7:6,1:6:216:1:36:-1.47584,0,-17.6778	0/1:165:117,48:117:4177:48:1724:-103.679,0,-322.495	0/1:74:37,37:37:1319:37:1320:-94.2921,0,-94.5462	0/1:11:8,2:8:280:2:68:-3.0444,0,-22.166	0/1:198:99,99:99:3537:99:3533:-254.721,0,-256.209	0/1:54:36,18:36:1273:18:633:-40.4293,0,-95.8396	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7225	0/1:8:3,5:3:108:5:180:-14.0024,0,-7.44711	0/1:144:63,81:63:2264:81:2890:-213.081,0,-156.561	0/1:247:208,38:208:7426:38:1360:-46.1486,0,-586.315	0/1:7:3,4:3:104:4:144:-11.0862,0,-7.5558	0/1:79:28,51:28:1000:51:1828:-138.186,0,-64.337	0/1:120:83,37:83:2954:37:1328:-82.5125,0,-226.721	0/1:70:48,22:48:1711:22:784:-48.5307,0,-130.427	0/1:42:22,20:22:788:20:716:-50.9725,0,-57.8076	0/1:221:102,118:102:3655:118:4215:-308.234,0,-257.997	0/1:82:47,34:47:1692:34:1206:-82.8863,0,-127.273	0/1:169:112,57:112:3986:57:2021:-126.497,0,-305.205	0/1:52:22,30:22:792:30:1060:-78.2574,0,-55.3605	0/1:251:210,32:210:7494:32:1152:-27.0772,0,-585.249	0/1:26:16,10:16:576:10:360:-24.5276,0,-44.1558	0/1:117:44,73:44:1564:73:2607:-197.19,0,-104.14	0/1:78:35,43:35:1256:43:1531:-113.143,0,-88.8164	0/1:273:188,85:188:6719:85:3028:-186.377,0,-516.348	0/1:165:47,117:47:1677:117:4150:-320.763,0,-96.7084	0/1:161:99,62:99:3530:62:2228:-149.561,0,-265.645	0/1:104:77,27:77:2755:27:968:-55.2109,0,-216.032	0/1:14:4,10:4:144:10:360:-28.3735,0,-9.0992	0/1:131:65,66:65:2313:66:2357:-169.957,0,-163.197	0/1:157:97,60:97:3444:60:2159:-142.78,0,-258.379	0/1:285:124,161:124:4405:161:5726:-421.908,0,-300.358	0/1:179:151,27:151:5361:27:955:-30.7763,0,-413.242	0/1:220:156,63:156:5540:63:2264:-133.813,0,-422.903	0/1:181:130,50:130:4611:50:1796:-104.305,0,-345.949	0/1:391:264,127:264:9451:127:4515:-282.326,0,-707.372	0/1:104:91,12:91:3251:12:424:-6.10033,0,-255.614	0/1:182:120,62:120:4299:62:2211:-139.554,0,-326.444	0/1:194:131,62:131:4669:62:2190:-134.409,0,-355.536	0/1:90:71,18:71:2519:18:644:-29.9201,0,-195.651	0/1:212:168,44:168:5940:44:1580:-75.3467,0,-465.516	0/1:198:175,23:175:6233:23:824:-13.7983,0,-496.584	0/1:171:97,74:97:3452:74:2626:-181.849,0,-251.806	0/1:309:192,116:192:6886:116:4151:-273.47,0,-510.088
chr03	11258364	.	TCT	TTT,ACC	246747	PASS	AB=0.503644,0.358795;ABP=4.56131,2331.5;AC=78,83;AF=0.414894,0.441489;AN=188;AO=6772,4824;CIGAR=1M1X1M,1X1M1X;DP=13450;DPB=13450.3;DPRA=0,0;EPP=68.5213,4492.23;EPPR=1841.59;GTI=10;LEN=1,3;MEANALT=2.36559,2.36559;MQM=47.0777,45.5985;MQMR=58.8216;NS=94;NUMALT=2;ODDS=2.03089;PAIRED=0,0;PAIREDR=0;PAO=1.5,0;PQA=54,0;PQR=54;PRO=1.5;QA=240621,169489;QR=64324;RO=1816;RPL=6323,3991;RPP=11066.8,4492.23;RPPR=1841.59;RPR=449,833;RUN=1,1;SAF=3163,0;SAP=66.7936,10478.2;SAR=3609,4824;SRF=0;SRP=3946.4;SRR=1816;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:142:0,62,80:0:0:62,80:2201,2766:-398.887,-222.17,-203.506,-177.063,0,-152.981	1/2:145:0,77,68:0:0:77,68:2708,2421:-411.715,-195.533,-172.354,-216.531,0,-196.061	1/2:207:32,94,81:32:1138:94,81:3324,2824:-391.167,-132.802,-197.249,-175.248,0,-243.606	1/2:206:50,96,60:50:1769:96,60:3391,2118:-277.695,-25.4147,-140.589,-123.253,0,-249.266	1/2:142:25,53,64:25:898:53,64:1891,2268:-253.774,-109.351,-165.955,-79.387,0,-132.679	1/2:159:18,61,79:18:635:61,79:2170,2726:-337.265,-167.84,-199.084,-125.243,0,-151.066	1/2:136:0,63,71:0:0:63,71:2259,2491:-378.093,-198.984,-180.02,-179.117,0,-157.744	1/2:278:80,87,110:80:2825:87,110:3120,3857:-306.17,-79.083,-282.905,-21.1585,0,-218.054	1/2:138:15,83,40:15:533:83,40:2958,1404:-300.716,-69.3107,-87.7604,-192.48,0,-223.873	1/2:109:1,43,65:1:36:43,65:1483,2287:-297.454,-181.194,-171.187,-113.604,0,-96.9754	0/1:149:24,105,19:24:847:105,19:3713,676:-289.373,0,-37.359,-243.319,-15.6917,-306.564	1/2:283:1,173,106:1:36:173,106:6155,3737:-788.13,-295.403,-246.262,-490.101,0,-461.129	1/2:209:32,140,36:32:1145:140,36:4986,1277:-396.372,-8.15623,-59.387,-304.47,0,-387.004	1/2:251:39,144,68:39:1383:144,68:5114,2398:-475.101,-79.2498,-147.866,-295.623,0,-387.116	1/2:154:5,124,25:5:172:124,25:4379,894:-403.929,-58.5783,-34.1351,-333.996,0,-339.359	1/2:180:16,113,50:16:566:113,50:4015,1744:-410.694,-94.6482,-105.526,-275.971,0,-305.813	1/2:129:0,99,30:0:0:99,30:3469,1031:-358.18,-82.6613,-52.8593,-275.858,0,-266.827	1/2:136:23,83,30:23:824:83,30:2956,1071:-247.048,-19.581,-61.0224,-167.961,0,-225.358	1/2:87:2,67,18:2:64:67,18:2396,601:-234.324,-42.8824,-27.8631,-186.907,0,-186.639	1/2:95:0,42,52:0:0:42,52:1508,1843:-268.999,-148.017,-135.374,-120.991,0,-105.338	0/2:189:73,50,66:73:2585:50,66:1770,2320:-164.334,-43.8582,-239.379,0,-68.1227,-190.703	1/2:76:0,27,49:0:0:27,49:968,1699:-214.151,-136.019,-127.891,-78.4814,0,-63.7309	1/2:144:2,54,88:2:72:54,88:1916,3105:-396.693,-243.606,-232.826,-148.224,0,-127.209	1/2:146:38,55,53:38:1342:55,53:1929,1856:-182.569,-40.1915,-132.869,-44.5777,0,-137.858	1/2:103:2,65,36:2:70:65,36:2298,1258:-278.471,-96.268,-81.348,-178.209,0,-172.02	0/2:200:85,51,64:85:3031:51,64:1827,2245:-152.341,-31.3465,-263.016,0,-100.441,-227.751	0/2:237:73,67,97:73:2550:67,97:2402,3416:-252.202,-83.5318,-269.053,0,-15.0431,-176.489	1/2:107:4,70,32:4:144:70,32:2510,1119:-275.463,-78.3935,-68.3681,-187.241,0,-188.654	0/2:177:89,17,71:89:3121:17,71:599,2501:-172.19,-151.432,-399.246,0,-205.385,-231.56	0/2:133:45,39,49:45:1583:39,49:1388,1717:-124.394,-27.2475,-143.911,0,-17.7113,-113.652	1/2:190:55,74,60:55:1947:74,60:2627,2097:-199.675,-8.32726,-144.651,-49.2997,0,-189.836	0/2:4:1,0,3:1:36:0,3:0,108:-8.83803,-9.13906,-12.0768,0,-3.29724,-2.39415	1/2:7:0,4,3:0:0:4,3:135,108:-20.0109,-9.13906,-7.93494,-11.2207,0,-10.3176	1/2:5:0,3,2:0:0:3,2:104,69:-13.8092,-5.40952,-4.50643,-8.7271,0,-8.12504	0/2:20:6,1,13:6:214:1,13:36,458:-35.0792,-33.9471,-51.0936,0,-14.5043,-13.5288	0/2:6:3,1,1:3:101:1,1:36,36:-2.00014,-0.0644291,-7.95294,0,-5.35575,-7.89055	1/2:609:101,332,174:101:3588:332,174:11787,6148:-1100.66,-191.043,-382.949,-648.164,0,-887.63	1/2:105:0,49,56:0:0:49,56:1760,1967:-299.037,-157.566,-142.815,-141.822,0,-124.964	1/2:177:2,122,53:2:72:122,53:4329,1862:-489.49,-142.882,-111.327,-342.063,0,-331.279	0/2:4:2,1,1:2:64:1,1:36,36:-2.32492,-0.00343253,-4.83271,0,-2.19402,-4.82951	1/2:125:1,77,47:1:27:77,47:2741,1670:-349.163,-132.487,-111.435,-214.927,0,-202.907	1/2:85:7,58,19:7:252:58,19:2079,664:-198.812,-34.2135,-35.3464,-148.122,0,-160.996	1/2:218:1,106,110:1:36:106,110:3740,3825:-603.232,-304.952,-275.28,-296.367,0,-265.491	1/2:192:6,138,48:6:216:138,48:4896,1708:-504.649,-119.259,-94.2368,-370.683,0,-372.754	1/2:148:4,96,48:4:144:96,48:3415,1685:-395.861,-123.475,-105.913,-262.252,0,-259.14	0/2:89:25,24,40:25:889:24,40:856,1373:-100.525,-39.4263,-104.64,0,-3.81654,-60.3906	1/2:122:0,67,55:0:0:67,55:2390,1904:-343.588,-153.092,-132.923,-190.841,0,-174.284	0/1:197:63,79,54:63:2223:79,54:2795,1886:-202.68,0,-157.238,-70.05,-29.4279,-234.813	1/2:76:0,52,24:0:0:52,24:1864,850:-216.537,-68.6788,-53.0252,-148.208,0,-140.983	0/1:149:48,58,43:48:1711:58,43:2079,1506:-149.683,0,-122.016,-44.4266,-19.7733,-170.954	1/2:91:0,24,67:0:0:24,67:824,2370:-253.493,-188.274,-181.049,-65.5569,0,-45.3879	0/1:8:4,3,1:4:142:3,1:108,36:-7.60371,0,-10.6644,-5.88445,-8.64307,-17.1509	0/1:165:47,70,48:47:1679:70,48:2477,1700:-183.994,0,-115.544,-61.6745,-0.152226,-183.841	1/2:74:12,25,37:12:428:25,37:892,1286:-134.45,-67.3352,-94.7035,-35.8249,0,-59.5798	0/2:11:8,1,2:8:270:1,2:36,70:-3.24291,-2.72073,-24.2934,0,-18.934,-21.2611	0/2:199:53,46,100:53:1906:46,100:1628,3517:-266.312,-152.437,-294.098,0,-25.6861,-125.407	1/2:55:0,37,18:0:0:37,18:1320,636:-156.05,-51.5961,-40.458,-104.803,0,-99.3845	0/1:5:2,3,0:2:72:3,0:108,0:-8.54684,0,-5.33157,-9.14889,-6.23466,-15.0241	1/2:8:0,3,5:0:0:3,5:108,172:-22.7822,-14.1778,-13.2747,-8.95226,0,-7.44711	1/2:144:0,63,81:0:0:63,81:2224,2868:-407.709,-230.155,-211.19,-177.901,0,-153.517	0/1:249:63,148,37:63:2224:148,37:5262,1317:-403.383,0,-135.475,-317.216,-74.8951,-486.103	1/2:7:0,3,4:0:0:3,4:108,144:-20.7372,-11.9893,-11.0862,-9.10501,0,-7.90089	1/2:80:0,27,53:0:0:27,53:964,1882:-227.179,-150.767,-142.639,-76.7597,0,-60.8051	1/2:118:2,79,37:2:72:79,37:2795,1317:-324.262,-100.345,-82.4384,-218.636,0,-213.373	1/2:71:2,46,23:2:72:46,23:1643,818:-190.354,-59.7096,-51.7376,-125.335,0,-124.286	0/2:43:16,7,20:16:572:7,20:252,693:-50.4226,-35.4653,-80.0054,0,-26.8779,-40.6262	1/2:224:28,77,118:28:987:77,118:2727,4172:-464.875,-255.445,-311.853,-138.273,0,-182.338	1/2:82:4,44,34:4:142:44,34:1572,1206:-211.951,-85.5064,-83.5571,-116.358,0,-117.418	1/2:167:18,91,56:18:640:91,56:3252,1982:-362.444,-105.348,-130.112,-210.354,0,-245.652	1/2:52:0,22,30:0:0:22,30:775,1044:-146.751,-84.1593,-77.5366,-62.9389,0,-53.908	0/1:255:77,142,33:77:2713:142,33:5035,1164:-375.852,0,-172.98,-307.876,-124.57,-513.663	0/2:26:12,4,10:12:424:4,10:144,358:-25.212,-17.2621,-50.5875,0,-22.9664,-31.5184	1/2:118:0,44,74:0:0:44,74:1560,2617:-336.539,-211.145,-197.9,-125.744,0,-103.468	1/2:79:0,36,43:0:0:36,43:1296,1540:-228.909,-124.404,-113.567,-104.86,0,-91.9157	1/2:279:74,117,88:74:2622:117,88:4142,3062:-342.733,-32.2334,-210.125,-119.661,0,-306.279	1/2:165:2,46,117:2:72:46,117:1648,4103:-455.501,-325.842,-317.064,-125.224,0,-95.0721	1/2:164:0,99,65:0:0:99,65:3551,2288:-470.256,-184.444,-154.642,-286.162,0,-266.595	0/2:104:58,19,27:58:2036:19,27:675,967:-60.4905,-23.7164,-183.694,0,-111.465,-157.572	0/2:15:4,1,10:4:144:1,10:36,350:-27.1199,-25.3859,-36.8379,0,-8.8127,-8.73941	1/2:133:1,64,68:1:36:64,68:2237,2375:-364.667,-187.84,-171.512,-174.173,0,-156.641	1/2:159:28,69,61:28:975:69,61:2449,2127:-277.199,-90.3399,-148.855,-116.003,0,-176.924	1/2:284:1,118,165:1:36:118,165:4201,5782:-794.508,-460.717,-428.133,-331.142,0,-284.41	1/2:183:12,143,28:12:429:143,28:5103,984:-442.47,-43.9824,-35.2083,-367.823,0,-393.665	1/2:220:25,131,64:25:885:131,64:4677,2258:-473.391,-108.782,-140.737,-300.742,0,-352.865	1/2:182:2,129,50:2:72:129,50:4566,1777:-495.001,-136.682,-102.947,-353.843,0,-343.89	1/2:392:3,260,128:3:108:260,128:9171,4458:-1070.47,-347.74,-278.285,-714.841,0,-685.122	0/1:108:26,66,12:26:926:66,12:2367,430:-180.646,0,-54.9062,-154.839,-41.1406,-225.991	1/2:180:1,118,61:1:36:118,61:4195,2148:-505.828,-169.159,-136.258,-334.372,0,-318.63	1/2:197:25,108,63:25:884:108,63:3873,2192:-404.298,-102.074,-141.554,-237.754,0,-290.777	1/2:89:3,66,18:3:108:66,18:2360,646:-231.337,-42.6625,-31.6088,-180.781,0,-184.175	0/1:215:56,114,44:56:2001:114,44:4059,1529:-310.302,0,-128.467,-205.801,-41.4295,-355.332	0/1:197:45,129,23:45:1616:129,23:4590,807:-356.333,0,-93.0001,-305.159,-67.1162,-430.062	1/2:170:1,95,73:1:36:95,73:3358,2553:-467.841,-202.092,-176.432,-263.124,0,-244.087	1/2:308:2,189,117:2:70:189,117:6745,4114:-855.536,-322.342,-271.142,-528.097,0,-498.572
chr03	11258371	.	C	T	295667	PASS	AB=0.763928;ABP=4303.65;AC=141;AF=0.75;AN=188;AO=11587;CIGAR=1X;DP=13355;DPB=13355;DPRA=0;EPP=5064.62;EPPR=3596.31;GTI=16;LEN=1;MEANALT=1.03191;MQM=46.4926;MQMR=58.5637;NS=94;NUMALT=1;ODDS=0.61231;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=413743;QR=63115;RO=1765;RPL=11554;RPP=24878;RPPR=3596.31;RPR=33;RUN=1;SAF=3162;SAP=5194;SAR=8425;SRF=0;SRP=3835.66;SRR=1765;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:139:0,139:0:0:139:4976:-440.123,-41.8432,0	1/1:144:1,143:1:36:143:5115:-451.077,-40.4456,0	0/1:207:32,175:32:1152:175:6243:-492.361,0,-41.6769	0/1:205:48,157:48:1724:157:5619:-431.692,0,-93.7121	0/1:143:22,121:22:792:121:4313:-338.801,0,-28.5584	0/1:158:15,143:15:540:143:5077:-400.199,0,-1.3738	1/1:135:0,135:0:0:135:4816:-424.367,-40.6391,0	0/1:273:77,195:77:2745:195:6963:-536.026,0,-165.027	0/1:137:14,123:14:504:123:4362:-344.934,0,-4.45698	1/1:105:1,104:1:36:104:3724:-326.873,-29.3293,0	0/1:145:24,121:24:845:121:4330:-338.342,0,-32.7071	1/1:282:2,280:2:72:280:10005:-876.073,-78.0586,0	0/1:209:32,177:32:1144:177:6314:-493.714,0,-40.3542	0/1:250:36,214:36:1281:214:7668:-599.896,0,-40.3225	1/1:152:5,147:5:180:147:5253:-447.162,-31.521,0	1/1:178:14,164:14:500:164:5860:-472.225,-9.73758,0	1/1:129:0,129:0:0:129:4588:-402.584,-38.8329,0	0/1:135:21,114:21:752:114:4092:-319.418,0,-26.5872	1/1:87:2,85:2:72:85:3045:-263.24,-19.3626,0	1/1:93:1,92:1:36:92:3281:-288,-24.6082,0	0/1:186:72,114:72:2565:114:4096:-307.865,0,-175.107	1/1:75:0,75:0:0:75:2675:-237.474,-22.5773,0	1/1:143:1,142:1:36:142:5062:-445.718,-39.5928,0	0/1:148:38,110:38:1364:110:3917:-302.588,0,-78.4527	1/1:102:2,100:2:68:100:3549:-306.845,-24.7327,0	0/1:197:85,112:85:3018:112:3970:-290.617,0,-212.479	0/1:234:71,163:71:2544:163:5848:-446.25,0,-156.872	1/1:107:3,104:3:104:104:3732:-317.852,-23.2362,0	0/1:175:86,88:86:3069:88:3156:-224.816,0,-222.8	0/1:130:43,87:43:1544:87:3086:-234.373,0,-99.9291	0/1:190:54,136:54:1919:136:4849:-367.107,0,-115.79	0/1:4:1,3:1:21:3:104:-8.47225,0,-0.895826	1/1:7:0,7:0:0:7:252:-22.8474,-2.10721,0	1/1:5:0,5:0:0:5:176:-15.5125,-1.50515,0	0/1:20:6,14:6:216:14:504:-39.2504,0,-13.7699	0/1:6:4,2:4:144:2:72:-4.87157,0,-10.9362	0/1:606:100,506:100:3568:506:18134:-1408.16,0,-136.885	1/1:105:1,104:1:36:104:3702:-324.655,-28.0099,0	1/1:175:1,174:1:36:174:6215:-545.889,-49.0871,0	0/1:4:2,2:2:57:2:72:-5.60694,0,-4.20919	1/1:124:1,123:1:36:123:4379:-382.163,-33.732,0	1/1:84:7,77:7:252:77:2764:-223.733,-4.25436,0	1/1:217:0,217:0:0:217:7737:-685.262,-65.3235,0	1/1:195:5,190:5:176:190:6790:-582.746,-45.7325,0	1/1:143:4,139:4:140:139:4958:-426.698,-30.509,0	0/1:91:25,66:25:900:66:2341:-178.329,0,-53.9096	1/1:122:2,120:2:72:120:4287:-373.376,-30.2892,0	0/1:194:56,138:56:2008:138:4937:-377.449,0,-122.594	1/1:77:0,77:0:0:77:2748:-242.482,-23.1793,0	0/1:150:48,102:48:1709:102:3648:-274.209,0,-108.937	1/1:92:0,92:0:0:92:3292:-288.794,-27.6948,0	0/1:8:4,4:4:144:4:144:-10.8857,0,-10.9054	0/1:165:47,118:47:1688:118:4221:-324.472,0,-102.258	0/1:74:13,61:13:464:61:2173:-169.116,0,-19.6301	0/1:10:7,3:7:252:3:104:-6.63167,0,-20.0187	0/1:197:53,144:53:1900:144:5141:-396.192,0,-111.975	1/1:56:0,56:0:0:56:1966:-173.509,-16.8577,0	0/1:5:2,3:2:72:3:108:-8.54684,0,-5.33157	1/1:8:0,8:0:0:8:284:-25.5531,-2.40824,0	1/1:141:0,141:0:0:141:5009:-443.121,-42.4452,0	0/1:249:59,190:59:2115:190:6798:-527.808,0,-114.126	0/1:7:1,6:1:36:6:216:-17.5439,0,-1.44131	1/1:80:0,80:0:0:80:2849:-251.634,-24.0824,0	1/1:117:4,113:4:140:113:4035:-347.134,-23.1556,0	1/1:70:2,68:2:68:68:2419:-207.707,-14.6144,0	0/1:42:16,26:16:576:26:924:-68.939,0,-39.5317	0/1:223:27,196:27:968:196:6956:-548.35,0,-20.3077	1/1:80:3,77:3:108:77:2750:-235.667,-14.012,0	0/1:167:19,148:19:684:148:5273:-417.638,0,-11.3901	1/1:53:0,53:0:0:53:1902:-168.955,-15.9546,0	0/1:254:73,181:73:2620:181:6485:-489.965,0,-153.65	0/1:25:11,14:11:396:14:504:-37.5944,0,-28.457	1/1:115:0,115:0:0:115:4092:-364.523,-34.6185,0	1/1:81:0,81:0:0:81:2889:-257.574,-24.3834,0	0/1:270:73,197:73:2612:197:6985:-538.421,0,-153.56	1/1:160:2,158:2:72:158:5641:-494.656,-42.1781,0	1/1:160:1,159:1:36:159:5677:-501.631,-44.6163,0	0/1:104:57,47:57:2035:47:1676:-118.223,0,-152.114	0/1:15:4,11:4:144:11:373:-29.2409,0,-8.79817	1/1:131:1,130:1:36:130:4648:-405.696,-35.8367,0	0/1:157:28,129:28:996:129:4607:-358.67,0,-42.6923	1/1:286:1,285:1:36:285:10173:-894.565,-82.4963,0	1/1:179:9,170:9:324:170:6077:-504.082,-26.2981,0	0/1:220:24,196:24:864:196:7036:-553.792,0,-11.1165	1/1:182:2,180:2:72:180:6397:-555.354,-50.4576,0	1/1:384:4,380:4:144:380:13606:-1178.7,-102.319,0	0/1:109:22,87:22:788:87:3111:-240.025,0,-37.9657	1/1:181:1,180:1:36:180:6417:-564.291,-51.2403,0	0/1:195:23,172:23:828:172:6180:-486.523,0,-16.1318	1/1:91:4,87:4:144:87:3116:-264.598,-15.5179,0	0/1:216:56,160:56:2016:160:5687:-440.277,0,-115.379	0/1:199:45,154:45:1620:154:5512:-430.352,0,-86.1846	1/1:170:1,169:1:36:169:6044:-528.508,-47.5768,0	1/1:305:1,303:1:32:303:10842:-949.318,-88.6335,0
chr03	11258377	.	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chr03	11309557	.	A	G	15791.5	PASS	AB=0.558449;ABP=52.0019;AC=32;AF=0.170213;AN=188;AO=937;CIGAR=1X;DP=4289;DPB=4289;DPRA=1.51173;EPP=2037.68;EPPR=7279.61;GTI=2;LEN=1;MEANALT=1;MQM=59.9861;MQMR=59.9779;NS=94;NUMALT=1;ODDS=0.350047;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33472;QR=119688;RO=3351;RPL=0;RPP=2037.68;RPPR=7279.61;RPR=937;RUN=1;SAF=937;SAP=2037.68;SAR=0;SRF=3351;SRP=7279.61;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:90:31,59:31:1112:59:2124:-164.336,0,-73.2986	0/1:56:24,32:24:849:32:1140:-86.0515,0,-59.8701	0/0:92:91,0:91:3251:0:0:0,-27.3937,-292.451	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.484	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:63:33,30:33:1184:30:1076:-78.188,0,-87.9034	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:32:19,13:19:680:13:468:-32.8267,0,-51.8962	0/1:39:21,18:21:748:18:640:-46.1891,0,-55.9051	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:57:55,2:55:1957:2:72:0,-10.322,-169.567	0/0:90:90,0:90:3209:0:0:0,-27.0927,-289.032	0/1:37:10,27:10:360:27:968:-76.2993,0,-21.6062	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:184:84,100:84:2997:100:3542:-263.599,0,-214.571	0/0:80:80,0:80:2838:0:0:0,-24.0824,-255.656	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:78:33,45:33:1188:45:1612:-121.89,0,-83.7483	0/0:81:78,3:78:2742:3:108:0,-14.3083,-236.944	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:126:125,1:125:4476:1:36:0,-34.3315,-399.411	0/0:94:93,1:93:3276:1:36:0,-24.6985,-291.458	0/1:34:18,16:18:644:16:568:-41.2168,0,-48.0556	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:64:21,43:21:747:43:1535:-119.176,0,-48.2884	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:32:15,17:15:536:17:608:-45.4191,0,-38.9337	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.346	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:110:46,64:46:1637:64:2291:-173.337,0,-114.503	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:55:30,25:30:1076:25:896:-64.4037,0,-80.5962	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:74:31,43:31:1116:43:1532:-115.892,0,-78.4755	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2902	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:96:50,46:50:1796:46:1652:-120.07,0,-133.023	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:72:71,1:71:2548:1:36:0,-18.0759,-225.972	0/0:87:87,0:87:3093:0:0:0,-26.1896,-278.597	0/0:56:52,4:52:1864:4:144:0,-3.54406,-154.726	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:78:17,61:17:612:61:2178:-172.805,0,-31.9331	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:81:38,43:38:1368:43:1532:-113.79,0,-99.0374	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.387	0/0:91:91,0:91:3222:0:0:0,-27.3937,-289.575	0/1:25:12,13:12:428:13:464:-34.5718,0,-31.3331	0/1:87:33,54:33:1169:54:1940:-148.687,0,-79.3257	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/0:51:50,1:50:1777:1:36:0,-11.7543,-156.613	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:66:65,1:65:2321:1:36:0,-16.2697,-205.55	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.818	0/1:21:12,9:12:432:9:324:-23.1833,0,-32.8996	0/1:36:16,20:16:576:20:695:-52.033,0,-41.3379	0/1:69:36,33:36:1284:33:1163:-84.2051,0,-95.0923	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/1:78:42,36:42:1504:36:1292:-93.1034,0,-112.174	0/1:33:9,24:9:324:24:860:-67.7878,0,-19.5719	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:58:57,1:57:2040:1:36:0,-13.8615,-180.274
chr03	11350136	.	T	A,G	87539.2	PASS	AB=0.435484,0.564516;ABP=56.8068,56.8068;AC=155,33;AF=0.824468,0.175532;AN=188;AO=3132,851;CIGAR=1X,1X;DP=3983;DPB=3983;DPRA=10.6962,1.49342;EPP=6752.05,1850.93;EPPR=0;GTI=3;LEN=1,1;MEANALT=1.37634,1.97222;MQM=59.6804,59.7626;MQMR=0;NS=94;NUMALT=2;ODDS=0.714088;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=112025,30399;QR=0;RO=0;RPL=3126,851;RPP=6752.05,1850.93;RPPR=0;RPR=6,0;RUN=1,1;SAF=0,0;SAP=6804.06,1850.93;SAR=3132,851;SRF=0;SRP=0;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:33:0,20,13:0:0:20,13:712,464:-96.2104,-38.1808,-32.1602,-58.3861,0,-54.4727	1/2:68:0,40,28:0:0:40,28:1436,1000:-199.004,-81.8731,-69.8319,-117.489,0,-109.06	1/1:109:0,108,1:0:0:108,1:3872,36:-348.282,-32.5112,0,-345.344,-29.214,-345.043	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:10:0,10,0:0:0:10,0:360,0:-32.7409,-3.0103,0,-32.7409,-3.0103,-32.7409	1/1:37:0,37,0:0:0:37,0:1324,0:-119.462,-11.1381,0,-119.462,-11.1381,-119.462	1/2:38:0,20,18:0:0:20,18:720,635:-110.811,-52.0584,-46.0378,-59.1082,0,-53.6896	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:78:0,78,0:0:0:78,0:2785,0:-250.868,-23.4803,0,-250.868,-23.4803,-250.868	1/1:22:0,22,0:0:0:22,0:788,0:-71.2424,-6.62266,0,-71.2424,-6.62266,-71.2424	1/2:32:0,17,15:0:0:17,15:608,531:-93.1821,-43.6065,-38.4889,-49.9312,0,-45.4157	1/2:23:0,12,11:0:0:12,11:432,396:-67.9204,-32.6714,-29.0591,-35.6088,0,-32.2975	1/1:38:0,38,0:0:0:38,0:1359,0:-122.573,-11.4391,0,-122.573,-11.4391,-122.573	1/1:28:0,28,0:0:0:28,0:1004,0:-90.5349,-8.42884,0,-90.5349,-8.42884,-90.5349	1/1:21:0,21,0:0:0:21,0:756,0:-68.3611,-6.32163,0,-68.3611,-6.32163,-68.3611	1/1:25:0,25,0:0:0:25,0:882,0:-79.6932,-7.52575,0,-79.6932,-7.52575,-79.6932	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:60:0,60,0:0:0:60,0:2141,0:-192.94,-18.0618,0,-192.94,-18.0618,-192.94	1/1:84:0,84,0:0:0:84,0:3016,0:-271.664,-25.2865,0,-271.664,-25.2865,-271.664	1/2:23:0,6,17:0:0:6,17:208,612:-67.1956,-50.2927,-48.4865,-17.2529,0,-12.1354	1/1:11:0,11,0:0:0:11,0:396,0:-35.9766,-3.31133,0,-35.9766,-3.31133,-35.9766	1/1:14:0,13,1:0:0:13,1:453,36:-40.736,-3.91339,0,-37.7977,-0.616145,-37.4967	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:194:0,73,121:0:0:73,121:2601,4336:-565.975,-353.972,-331.996,-212.36,0,-175.936	1/1:99:0,99,0:0:0:99,0:3548,0:-319.519,-29.802,0,-319.519,-29.802,-319.519	1/1:16:0,16,0:0:0:16,0:572,0:-51.8119,-4.81648,0,-51.8119,-4.81648,-51.8119	1/2:134:0,55,79:0:0:55,79:1968,2816:-390.356,-229.89,-213.333,-160.823,0,-137.042	1/1:77:0,73,4:0:0:73,4:2593,144:-233.255,-21.9752,0,-221.505,-9.86569,-220.301	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:7:0,2,5:0:0:2,5:72,180:-20.7869,-14.9146,-14.3126,-6.23114,0,-4.72599	1/1:90:0,90,0:0:0:90,0:3236,0:-291.441,-27.0927,0,-291.441,-27.0927,-291.441	1/1:38:0,38,0:0:0:38,0:1331,0:-120.064,-11.4391,0,-120.064,-11.4391,-120.064	1/2:19:0,12,7:0:0:12,7:428,252:-55.8096,-20.9217,-17.3094,-35.2464,0,-33.1392	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:74:0,36,38:0:0:36,38:1277,1360:-215.283,-111.257,-100.42,-104.382,0,-92.9426	1/2:8:0,4,4:0:0:4,4:144,140:-23.4951,-11.7405,-10.5363,-12.1095,0,-10.9054	1/1:29:0,29,0:0:0:29,0:1044,0:-94.264,-8.72987,0,-94.264,-8.72987,-94.264	1/1:16:0,16,0:0:0:16,0:576,0:-52.1704,-4.81648,0,-52.1704,-4.81648,-52.1704	1/1:19:0,19,0:0:0:19,0:682,0:-61.706,-5.71957,0,-61.706,-5.71957,-61.706	1/2:40:0,28,12:0:0:28,12:1008,432:-117.845,-35.6088,-27.18,-82.5959,0,-78.9836	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:55:0,55,0:0:0:55,0:1954,0:-176.11,-16.5567,0,-176.11,-16.5567,-176.11	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7878,-9.0309,0,-96.7878,-9.0309,-96.7878	1/2:128:0,42,86:0:0:42,86:1500,3076:-373.464,-251.175,-238.531,-122.647,0,-96.7581	1/1:39:0,39,0:0:0:39,0:1380,0:-124.376,-11.7402,0,-124.376,-11.7402,-124.376	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:44:0,15,29:0:0:15,29:540,1036:-128.84,-84.7782,-80.2627,-44.4211,0,-35.6912	1/1:30:0,30,0:0:0:30,0:1068,0:-96.4297,-9.0309,0,-96.4297,-9.0309,-96.4297	1/1:4:0,4,0:0:0:4,0:136,0:-12.5755,-1.20412,0,-12.5755,-1.20412,-12.5755	1/2:78:0,41,37:0:0:41,37:1472,1328:-228.753,-108.684,-96.3419,-120.428,0,-109.29	1/2:6:0,1,5:0:0:1,5:36,180:-17.9843,-15.0469,-14.7459,-3.29724,0,-1.79209	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443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chr03	11655974	.	C	T	20734.5	PASS	AB=0.540881;ABP=35.3229;AC=31;AF=0.164894;AN=188;AO=1207;CIGAR=1X;DP=5837;DPB=5837;DPRA=1.28166;EPP=2597.98;EPPR=9051.62;GTI=2;LEN=1;MEANALT=1.06061;MQM=59.4805;MQMR=59.6198;NS=94;NUMALT=1;ODDS=0.183493;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43109;QR=165403;RO=4627;RPL=1204;RPP=2597.98;RPPR=9051.62;RPR=3;RUN=1;SAF=1207;SAP=2623.98;SAR=0;SRF=4627;SRP=10050.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:16,17:16:559:17:608:-45.118,0,-40.7036	0/1:66:27,39:27:964:39:1404:-106.756,0,-67.1017	0/1:125:72,53:72:2592:53:1850:-128.974,0,-195.883	0/0:120:120,0:120:4279:0:0:0,-36.1236,-385.066	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.0768	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.251	0/1:92:36,56:36:1292:56:2008:-153.299,0,-88.863	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.864	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.713	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.105	0/1:99:54,45:54:1900:45:1581:-112.688,0,-141.46	0/1:66:32,34:32:1152:34:1220:-90.2388,0,-84.114	0/0:91:91,0:91:3226:0:0:0,-27.3937,-290.536	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.441	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.932	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.03	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5051	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:41:5,36:5:176:36:1292:-104.192,0,-3.81384	0/0:60:60,0:60:2136:0:0:0,-18.0618,-192.497	0/0:64:64,0:64:2295:0:0:0,-19.2659,-206.553	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.912	0/1:72:41,31:41:1468:31:1116:-78.9977,0,-110.714	0/0:148:148,0:148:5316:0:0:0,-44.5524,-478.564	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:134:50,84:50:1800:84:2982:-228.236,0,-121.916	0/0:97:96,1:96:3434:1:36:0,-25.6016,-304.963	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.201	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5975	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:12:8,4:8:288:4:144:-9.69289,0,-22.655	0/0:179:179,0:179:6418:0:0:0,-53.8844,-577.26	0/0:98:98,0:98:3488:0:0:0,-29.5009,-314.119	0/1:49:20,29:20:701:29:1035:-78.7126,0,-48.6531	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:145:61,83:61:2196:83:2976:-224.063,0,-154.197	0/1:27:12,15:12:432:15:540:-40.7728,0,-31.0934	0/0:109:109,0:109:3890:0:0:0,-32.8123,-349.242	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/1:43:26,17:26:918:17:612:-42.4332,0,-69.8735	0/0:79:79,0:79:2823:0:0:0,-23.7814,-254.276	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.127	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/1:71:31,40:31:1112:40:1436:-108.156,0,-79.0066	0/0:89:88,0:88:3147:0:0:0,-26.4906,-282.985	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:172:70,102:70:2507:102:3619:-274.031,0,-174.095	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.094	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:107:47,59:47:1684:59:2120:-158.768,0,-119.574	0/1:21:10,11:10:360:11:387:-28.8083,0,-26.4227	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/1:102:56,46:56:2004:46:1656:-118.62,0,-149.843	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.908	0/0:92:92,0:92:3278:0:0:0,-27.6948,-295.141	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.498	0/0:67:65,2:65:2327:2:72:0,-13.3323,-202.736	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.535	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.645	0/1:92:36,56:36:1288:56:2008:-153.278,0,-88.5288	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.32	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.573	0/1:38:17,21:17:608:21:752:-56.5312,0,-43.6129	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.618	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.172	0/0:123:123,0:123:4392:0:0:0,-37.0267,-395.422	0/0:68:68,0:68:2426:0:0:0,-20.47,-218.538	0/1:115:58,57:58:2084:57:2048:-149.952,0,-153.187	0/1:74:41,33:41:1472:33:1188:-84.9524,0,-110.5	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.747	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:103:103,0:103:3675:0:0:0,-31.0061,-330.95	0/0:58:58,0:58:2056:0:0:0,-17.4597,-185.269	0/1:62:30,32:30:1076:32:1152:-85.2767,0,-78.4606	0/1:30:18,12:18:639:12:425:-29.5406,0,-48.8073	0/1:87:46,41:46:1634:41:1468:-106.162,0,-121.158	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.622	0/0:69:69,0:69:2445:0:0:0,-20.7711,-220.224	0/1:53:24,29:24:860:29:1035:-77.4784,0,-61.7591	0/1:136:60,76:60:2156:76:2698:-201.947,0,-153.161	0/1:44:11,33:11:396:33:1173:-92.6302,0,-22.7374	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.517
chr03	11871402	.	CGT	TGT,TGC	100649	PASS	AB=0.52182,0.474396;ABP=54.371,73.7311;AC=94,94;AF=0.5,0.5;AN=188;AO=6492,5911;CIGAR=1X2M,1X1M1X;DP=12450;DPB=12450;DPRA=133.86,30.0507;EPP=14100.2,12838.6;EPPR=16.0391;GTI=10;LEN=1,3;MEANALT=2.3871,2.40217;MQM=26.4139,21.7603;MQMR=44.1667;NS=94;NUMALT=2;ODDS=5228.3;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=171384,208341;QR=187;RO=6;RPL=6492,5911;RPP=14100.2,12838.6;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=6492,5911;SAP=14100.2,12838.6;SAR=0,0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:75:0,45,30:0:0:45,30:1388,1035:-141.135,-41.8918,-28.3455,-99.4677,0,-90.4368	1/2:63:0,33,30:0:0:33,30:1016,1059:-114.446,-41.8277,-31.8937,-72.8489,0,-63.818	1/2:192:0,83,107:0:0:83,107:2538,3771:-332.55,-151.411,-126.425,-181.159,0,-148.948	1/2:308:0,175,132:0:0:175,132:4390,4666:-524.226,-229.954,-177.273,-294.25,0,-254.514	1/2:58:0,37,21:0:0:37,21:1007,727:-102.481,-32.9766,-21.8385,-69.7237,0,-63.402	1/2:35:0,25,10:0:0:25,10:769,358:-69.1767,-14.1982,-6.6724,-55.1929,0,-52.1826	1/2:67:0,40,27:0:0:40,27:1006,926:-113.366,-45.6793,-33.6381,-67.9072,0,-59.7794	1/2:128:0,63,65:0:0:63,65:1930,2305:-230.387,-92.258,-73.2931,-138.363,0,-118.796	1/2:105:0,73,32:0:0:73,32:2241,1135:-204.957,-45.3041,-23.3289,-159.87,0,-150.237	1/2:137:0,84,53:0:0:84,53:2102,1878:-234.498,-93.3157,-68.0292,-141.408,0,-125.453	1/2:110:0,60,50:0:0:60,50:1497,1734:-186.818,-86.3702,-68.3084,-100.67,0,-85.6189	1/2:133:0,50,82:0:0:50,82:1502,2887:-221.92,-114.931,-99.8793,-107.058,0,-82.3732	1/2:84:0,26,58:0:0:26,58:800,2064:-138.376,-81.2144,-73.3877,-57.4112,0,-39.9515	1/2:102:0,57,45:0:0:57,45:1545,1562:-177.298,-70.6254,-53.4667,-106.895,0,-93.3485	1/2:131:0,68,62:0:0:68,62:1704,2203:-223.813,-109.125,-88.6553,-114.685,0,-96.0212	1/2:95:1,56,38:1:28:56,38:1510,1333:-162.218,-58.4261,-43.783,-101.824,0,-92.5981	1/2:46:0,22,24:0:0:22,24:666,856:-81.0267,-33.6241,-27.0014,-47.6349,0,-40.4102	1/2:52:0,27,25:0:0:27,25:837,877:-95.0874,-35.1488,-27.0209,-60.1713,0,-52.6455	1/2:62:0,31,31:0:0:31,31:943,1101:-111.142,-43.9549,-34.6229,-67.4195,0,-58.0876	1/2:250:0,135,114:0:0:135,114:3382,4056:-425.606,-198.361,-157.722,-227.251,0,-192.934	1/2:290:0,165,124:0:0:165,124:4490,4420:-504.592,-194.781,-145.112,-309.825,0,-272.497	1/2:78:0,19,57:0:0:19,57:427,2011:-129.772,-102.196,-96.4769,-27.5467,0,-10.388	1/2:158:0,97,60:0:0:97,60:2425,2095:-265.15,-102.321,-73.1209,-162.833,0,-144.771	1/2:78:0,50,28:0:0:50,28:1364,995:-138.517,-44.5347,-29.4832,-94.2039,0,-85.775	1/2:113:0,75,38:0:0:75,38:2034,1341:-199.738,-59.3826,-36.8053,-140.574,0,-129.135	1/2:310:0,88,222:0:0:88,222:1939,7849:-512.059,-387.784,-361.293,-124.476,0,-57.6476	1/2:456:0,291,164:0:0:291,164:7919,5812:-807.273,-261.257,-173.658,-545.991,0,-496.622	1/2:57:0,30,27:0:0:30,27:816,957:-99.9852,-43.493,-34.4621,-56.7185,0,-48.5907	1/2:369:0,145,223:0:0:145,223:3215,7897:-596.39,-389.812,-346.163,-206.565,0,-139.436	1/2:164:0,116,47:0:0:116,47:3193,1661:-296.075,-74.2828,-39.3633,-221.803,0,-207.654	1/2:82:0,49,33:0:0:49,33:1222,1177:-139.315,-57.3328,-42.5823,-82.2051,0,-72.2711	2/2:1:0,0,1:0:0:0,1:0,36:-2.08658,-2.08658,-2.08658,-0.30103,-0.30103,0	1/2:18:0,12,6:0:0:12,6:328,216:-32.3541,-9.67004,-6.05768,-22.9042,0,-21.0981	1/2:12:0,7,5:0:0:7,5:217,180:-22.5974,-7.01477,-4.90756,-15.8073,0,-14.3022	2/2:20:0,2,18:0:0:2,18:62,608:-29.7548,-25.3088,-24.7068,-5.41854,-0.702229,0	1/2:18:0,8,10:0:0:8,10:248,358:-31.8058,-14.019,-11.6108,-18.0255,0,-15.0152	1/2:361:0,176,180:0:0:176,180:3912,6311:-562.146,-310.493,-257.512,-251.631,0,-197.445	1/2:195:3,118,72:3:95:118,72:3195,2509:-325.492,-106.13,-78.2025,-212.602,0,-198.52	1/2:63:0,15,48:0:0:15,48:451,1716:-100.186,-68.0127,-63.4972,-32.426,0,-17.9766	1/2:6:0,4,2:0:0:4,2:108,72:-10.9594,-3.36245,-2.15833,-7.81733,0,-7.21527	1/2:85:0,31,54:0:0:31,54:854,1878:-143.307,-85.0716,-75.7397,-58.4653,0,-42.2097	1/2:32:0,10,22:0:0:10,22:266,783:-52.3967,-34.1621,-31.1518,-18.4609,0,-11.8382	1/2:232:0,137,94:0:0:137,94:3704,3312:-402.664,-147.447,-106.206,-255.237,0,-226.94	1/2:103:0,51,51:0:0:51,51:1269,1814:-172.404,-87.0104,-71.6579,-85.3868,0,-70.0343	1/2:76:0,31,45:0:0:31,45:778,1563:-130.854,-78.3648,-69.0328,-52.7129,0,-39.1666	1/2:135:0,57,76:0:0:57,76:1275,2662:-213.476,-131.274,-114.116,-82.2027,0,-59.3244	1/2:209:0,95,114:0:0:95,114:2928,4066:-367.131,-158.56,-129.962,-208.808,0,-174.491	1/2:363:0,253,110:0:0:253,110:6370,3890:-618.647,-189.65,-113.49,-429.22,0,-396.107	1/2:130:0,71,59:0:0:71,59:1776,2077:-219.838,-100.784,-79.4113,-119.275,0,-101.515	1/2:175:0,66,109:0:0:66,109:1650,3822:-299.56,-188.769,-168.901,-111.012,0,-78.2002	1/2:191:0,113,77:0:0:113,77:2542,2715:-294.311,-130.967,-96.9504,-163.327,0,-140.148	1/2:13:0,7,6:0:0:7,6:175,216:-22.4739,-10.7276,-8.62037,-11.9706,0,-10.1644	1/2:135:0,62,72:0:0:62,72:1910,2548:-237.434,-100.664,-82.0005,-136.797,0,-115.123	1/2:50:0,18,32:0:0:18,32:396,1129:-80.2899,-54.9349,-49.5164,-25.557,0,-15.9241	1/1:8:0,8,0:0:0:8,0:246,0:-20.2513,-2.40824,0,-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chr03	11871424	.	G	A	33064.1	PASS	AB=0.519037;ABP=32.4439;AC=66;AF=0.354839;AN=186;AO=4854;CIGAR=1X;DP=10638;DPB=10638;DPRA=3.12985;EPP=10543.3;EPPR=12551.9;GTI=13;LEN=1;MEANALT=1.06154;MQM=24.9258;MQMR=21.7771;NS=93;NUMALT=1;ODDS=0.472858;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167244;QR=205638;RO=5779;RPL=4854;RPP=10543.3;RPPR=12551.9;RPR=0;RUN=1;SAF=4854;SAP=10543.3;SAR=0;SRF=5779;SRP=12551.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1051:0:0:0,-9.0309,-50.9808	0/0:30:30,0:30:1072:0:0:0,-9.0309,-50.8863	0/0:103:103,0:103:3683:0:0:0,-31.0061,-177.664	0/1:294:131,163:131:4660:163:5662:-265.861,0,-179.948	0/1:56:20,36:20:716:36:1250:-65.4925,0,-20.7153	0/0:9:9,0:9:320:0:0:0,-2.70927,-15.4991	0/1:64:26,38:26:907:38:1289:-64.7571,0,-32.857	0/0:63:63,0:63:2243:0:0:0,-18.9649,-108.027	0/0:31:31,0:31:1099:0:0:0,-9.33193,-53.219	0/1:125:52,73:52:1851:73:2499:-123.031,0,-69.5012	0/1:107:48,59:48:1724:59:2042:-96.5602,0,-65.743	0/0:80:80,0:80:2843:0:0:0,-24.0824,-137.315	0/0:58:58,0:58:2075:0:0:0,-17.4597,-98.6888	0/1:91:41,50:41:1438:50:1734:-89.4776,0,-50.0999	0/1:129:62,67:62:2211:67:2327:-108.389,0,-89.0038	0/1:96:38,58:38:1336:58:1974:-107.228,0,-43.5837	0/0:23:23,0:23:816:0:0:0,-6.92369,-39.1359	0/0:24:24,0:24:852:0:0:0,-7.22472,-41.0122	0/0:31:30,0:30:1068:0:0:0,-9.0309,-52.2093	0/1:248:111,137:111:3976:137:4705:-218.579,0,-152.727	0/1:268:123,145:123:4386:145:4950:-254.894,0,-151.396	0/1:74:54,20:54:1923:20:682:-17.1939,0,-91.7893	0/1:157:60,97:60:2131:97:3354:-160.793,0,-74.307	0/1:70:28,42:28:1000:42:1472:-76.7817,0,-31.9008	0/1:101:38,63:38:1341:63:2146:-117.006,0,-40.9003	0/1:300:217,83:217:7706:83:2883:-72.4592,0,-353.853	0/1:411:160,251:160:5699:251:8541:-458.616,0,-179.721	0/1:54:28,26:28:996:26:888:-44.4789,0,-37.2523	0/1:352:219,133:219:7788:133:4601:-154.322,0,-343.755	0/1:157:48,109:48:1699:109:3758:-208.277,0,-43.3175	0/1:81:33,48:33:1175:48:1673:-78.6985,0,-42.8669	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.08658	0/1:17:6,11:6:216:11:392:-21.3069,0,-6.35871	0/0:5:5,0:5:180:0:0:0,-1.50515,-8.51992	0/0:18:18,0:18:640:0:0:0,-5.41854,-30.2827	0/0:10:10,0:10:352:0:0:0,-3.0103,-17.0152	0/1:351:180,171:180:6411:171:5992:-232.343,0,-259.44	0/1:185:70,115:70:2488:115:3971:-208.039,0,-77.1766	0/0:47:47,0:47:1680:0:0:0,-14.1484,-80.7513	0/1:6:2,4:2:72:4:140:-6.95714,0,-2.15833	0/1:81:53,28:53:1859:28:955:-40.0389,0,-75.3028	0/1:29:20,9:20:716:9:316:-12.8652,0,-28.3135	0/1:218:91,127:91:3245:127:4442:-232.138,0,-105.437	0/1:103:51,52:51:1824:52:1782:-82.7398,0,-71.668	0/1:78:45,33:45:1582:33:1136:-50.0191,0,-68.8238	0/1:119:67,52:67:2390:52:1796:-66.0211,0,-100.247	0/0:110:110,0:110:3928:0:0:0,-33.1133,-186.74	0/1:341:107,233:107:3823:233:7964:-403.727,0,-114.324	0/1:127:58,69:58:2068:69:2360:-112.262,0,-78.7515	0/1:171:108,63:108:3848:63:2186:-85.252,0,-169.307	0/1:182:77,105:77:2743:105:3611:-153.135,0,-101.429	0/1:14:6,8:6:216:8:280:-13.006,0,-8.31934	0/0:72:72,0:72:2571:0:0:0,-21.6742,-122.923	0/1:49:32,17:32:1148:17:578:-17.611,0,-50.0157	.:.:.:.:.:.:.:.	0/1:171:100,71:100:3555:71:2433:-114.475,0,-139.533	0/1:48:22,26:22:784:26:897:-43.0783,0,-30.4206	0/1:7:3,4:3:108:4:144:-6.23292,0,-4.27361	0/1:15:7,8:7:243:8:276:-11.355,0,-9.8686	0/1:97:35,62:35:1243:62:2159:-116.495,0,-36.8828	0/1:106:60,46:60:2152:46:1602:-66.5942,0,-90.6258	1/1:1:0,1:0:0:1:32:-2.42122,-0.30103,0	0/1:422:220,202:220:7820:202:6959:-269.095,0,-329.121	0/1:193:87,106:87:3097:106:3639:-172.756,0,-118.701	0/1:77:37,40:37:1324:40:1394:-68.9119,0,-50.1293	0/1:138:71,67:71:2510:67:2251:-103.961,0,-101.494	0/1:245:90,154:90:3195:154:5328:-263.623,0,-109.421	0/1:156:123,33:123:4395:33:1150:-26.1797,0,-202.96	0/1:77:28,49:28:1000:49:1702:-92.0519,0,-29.2235	0/0:18:18,0:18:644:0:0:0,-5.41854,-30.8206	0/1:34:19,14:19:667:14:496:-17.6463,0,-29.5266	0/1:50:19,31:19:684:31:1064:-51.7144,0,-23.7969	0/0:84:84,0:84:2975:0:0:0,-25.2865,-143.176	0/0:103:103,0:103:3673:0:0:0,-31.0061,-177.143	0/1:127:61,65:61:2166:65:2220:-113.756,0,-77.1391	0/1:320:119,201:119:4239:201:6891:-344.939,0,-143.697	0/0:48:48,0:48:1703:0:0:0,-14.4494,-81.7043	0/0:81:81,0:81:2887:0:0:0,-24.3834,-138.489	0/0:3:3,0:3:108:0:0:0,-0.90309,-5.11255	0/1:164:77,87:77:2764:87:2936:-152.438,0,-95.627	0/0:69:69,0:69:2430:0:0:0,-20.7711,-119.7	0/1:451:168,283:168:5964:283:9667:-479.57,0,-208.858	0/1:107:39,68:39:1400:68:2409:-115.674,0,-49.7067	0/1:90:55,35:55:1960:35:1210:-50.1243,0,-85.2299	0/1:55:37,18:37:1319:18:619:-21.7756,0,-59.4185	0/1:179:121,58:121:4305:58:2029:-74.2055,0,-194.541	0/0:19:19,0:19:659:0:0:0,-5.71957,-34.0295	0/0:59:59,0:59:2088:0:0:0,-17.7608,-100.955	0/0:58:58,0:58:2067:0:0:0,-17.4597,-99.0181	0/1:45:23,22:23:828:22:750:-38.7369,0,-29.8546	0/1:143:77,66:77:2725:66:2281:-111.584,0,-104.086	0/1:81:54,27:54:1919:27:943:-31.7464,0,-86.6573	0/1:251:133,118:133:4736:118:4086:-179.832,0,-194.71	0/1:195:98,97:98:3481:97:3346:-154.15,0,-142.567
chr03	12661213	.	C	G	26802.4	PASS	AB=0.447645;ABP=91.4597;AC=32;AF=0.170213;AN=188;AO=1677;CIGAR=1X;DP=10082;DPB=10082;DPRA=1.2247;EPP=3644.57;EPPR=18254.2;GTI=0;LEN=1;MEANALT=1;MQM=59.4019;MQMR=59.9779;NS=94;NUMALT=1;ODDS=6.32455;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59940;QR=300511;RO=8405;RPL=0;RPP=3644.57;RPPR=18254.2;RPR=1677;RUN=1;SAF=1677;SAP=3644.57;SAR=0;SRF=8405;SRP=18254.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:17,19:17:608:19:680:-50.6744,0,-44.2149	0/1:167:114,53:114:4079:53:1900:-119.622,0,-317.023	0/1:138:73,65:73:2616:65:2305:-166.114,0,-194.059	0/0:233:232,1:232:8288:1:36:0,-66.5417,-742.333	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.055	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:154:154,0:154:5504:0:0:0,-46.3586,-495.442	0/1:185:115,70:115:4116:70:2508:-170.204,0,-314.926	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:106:106,0:106:3789:0:0:0,-31.9092,-341.207	0/0:119:119,0:119:4232:0:0:0,-35.8226,-381.06	0/1:65:32,33:32:1134:33:1188:-87.6264,0,-82.8003	0/1:78:39,39:39:1396:39:1400:-102.763,0,-102.459	0/0:112:112,0:112:4019:0:0:0,-33.7154,-361.897	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.256	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.047	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:286:286,0:286:10252:0:0:0,-86.0946,-922.605	0/0:156:156,0:156:5535:0:0:0,-46.9607,-498.278	0/1:105:34,71:34:1220:71:2556:-198.659,0,-78.4987	0/0:32:32,0:32:1132:0:0:0,-9.63296,-102.189	0/0:97:97,0:97:3442:0:0:0,-29.1999,-309.994	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:296:185,111:185:6620:111:3954:-266.888,0,-506.775	0/0:180:180,0:180:6416:0:0:0,-54.1854,-577.513	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:307:176,131:176:6312:131:4662:-326.605,0,-475.755	0/0:185:181,4:181:6476:4:144:0,-42.3878,-569.623	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:9:4,5:4:144:5:180:-13.8319,0,-10.6043	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:21:16,5:16:572:5:165:-8.85197,0,-45.4918	0/0:193:193,0:193:6915:0:0:0,-58.0988,-622.415	0/0:245:245,0:245:8733:0:0:0,-73.7523,-785.961	0/1:140:62,78:62:2215:78:2800:-210.049,0,-157.47	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:160:67,93:67:2389:93:3331:-251.729,0,-167.101	0/1:65:39,26:39:1392:26:936:-64.9712,0,-106.012	0/0:128:128,0:128:4588:0:0:0,-38.5318,-413.084	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	0/1:90:49,41:49:1740:41:1476:-106.037,0,-129.787	0/0:136:136,0:136:4859:0:0:0,-40.9401,-437.463	0/0:169:169,0:169:6052:0:0:0,-50.8741,-544.783	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/1:193:124,69:124:4444:69:2480:-165.164,0,-342.032	0/0:194:194,0:194:6945:0:0:0,-58.3998,-625.113	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:177:113,64:113:4036:64:2277:-151.873,0,-310.14	0/0:51:50,1:50:1796:1:36:0,-11.7543,-158.324	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:158:92,66:92:3259:66:2364:-165.439,0,-245.97	0/1:31:13,18:13:468:18:625:-47.2406,0,-33.1277	0/1:33:19,14:19:672:14:504:-35.7607,0,-50.8728	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:152:78,74:78:2796:74:2644:-192.423,0,-206.123	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:222:222,0:222:7874:0:0:0,-66.8287,-708.691	0/0:202:200,2:200:7152:2:72:0,-53.9778,-636.905	0/0:102:99,3:99:3552:3:108:0,-20.6299,-309.809	0/0:136:136,0:136:4872:0:0:0,-40.9401,-438.633	0/0:116:116,0:116:4148:0:0:0,-34.9195,-373.504	0/1:85:37,48:37:1324:48:1724:-129.856,0,-93.8745	0/0:84:83,1:83:2980:1:36:0,-21.6882,-264.834	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:128:62,66:62:2232:66:2349:-173.128,0,-162.612	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:106:106,0:106:3780:0:0:0,-31.9092,-340.394	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.661	0/0:175:175,0:175:6268:0:0:0,-52.6802,-564.214	0/1:137:77,60:77:2760:60:2143:-151.251,0,-207.4	0/1:109:68,41:68:2428:41:1462:-98.6881,0,-185.964	0/1:21:11,10:11:388:10:360:-26.4049,0,-28.9357	0/0:114:112,2:112:3992:2:68:0,-27.8642,-353.016	0/0:168:168,0:168:5980:0:0:0,-50.573,-538.308	0/0:229:229,0:229:8196:0:0:0,-68.9359,-737.653	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.304	0/1:89:46,43:46:1656:43:1544:-112.451,0,-122.537	0/1:60:37,23:37:1303:23:828:-56.7757,0,-99.5088	0/1:127:81,46:81:2891:46:1622:-108.022,0,-222.195	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.827	0/1:113:56,57:56:2004:57:2048:-150.536,0,-146.617	0/1:169:94,75:94:3372:75:2684:-190.875,0,-252.821	0/1:71:22,49:22:783:49:1741:-135.593,0,-49.4198	0/0:129:129,0:129:4624:0:0:0,-38.8329,-416.267	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272
chr03	12661233	.	G	T	182065	PASS	AB=0.547124;ABP=74.4355;AC=156;AF=0.829787;AN=188;AO=8280;CIGAR=1X;DP=9981;DPB=9981;DPRA=0;EPP=17551.1;EPPR=3269.88;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.9807;MQMR=59.4855;NS=94;NUMALT=1;ODDS=7.26936;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=295841;QR=60519;RO=1691;RPL=50;RPP=17551.1;RPPR=3269.88;RPR=8230;RUN=1;SAF=8280;SAP=17982.8;SAR=0;SRF=1691;SRP=3674.97;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:18,17:18:644:17:600:-43.7931,0,-47.7369	0/1:163:50,112:50:1792:112:4024:-313.26,0,-110.95	0/1:134:65,69:65:2324:69:2460:-181.228,0,-169.022	1/1:226:1,225:1:36:225:8057:-721.548,-64.4345,0	1/1:84:1,83:1:36:83:2949:-262.027,-21.6882,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:150:0,150:0:0:150:5384:-484.584,-45.1545,0	0/1:182:68,114:68:2429:114:4059:-310.71,0,-164.006	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:105:0,105:0:0:105:3776:-340.037,-31.6082,0	1/1:115:0,115:0:0:115:4115:-370.534,-34.6185,0	0/1:64:33,31:33:1175:31:1108:-80.7651,0,-86.7734	0/1:78:41,37:41:1472:37:1323:-95.891,0,-109.24	1/1:110:0,110:0:0:110:3879:-349.304,-33.1133,0	1/1:60:0,60:0:0:60:2141:-192.956,-18.0618,0	1/1:64:0,64:0:0:64:2289:-206.265,-19.2659,0	1/1:98:0,98:0:0:98:3494:-314.669,-29.5009,0	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	1/1:62:1,61:1:36:61:2142:-189.446,-15.0656,0	1/1:284:0,284:0:0:284:10150:-913.432,-85.4925,0	1/1:157:0,156:0:0:156:5585:-502.56,-46.9607,0	0/1:108:75,33:75:2684:33:1176:-73.6365,0,-209.271	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:95:0,95:0:0:95:3400:-306.215,-28.5979,0	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	0/1:304:114,190:114:4083:190:6788:-519.478,0,-275.929	1/1:177:0,177:0:0:177:6308:-567.808,-53.2823,0	1/1:28:0,28:0:0:28:993:-89.6825,-8.42884,0	0/1:304:128,175:128:4583:175:6270:-472.821,0,-321.049	1/1:179:4,175:4:144:175:6261:-550.28,-40.5817,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5309	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:22:5,17:5:176:17:612:-48.7908,0,-9.56236	1/1:186:0,186:0:0:186:6659:-599.385,-55.9916,0	1/1:240:0,237:0:0:237:8471:-762.03,-71.3441,0	0/1:140:79,61:79:2832:61:2170:-153.421,0,-212.928	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:159:94,64:94:3368:64:2297:-159.069,0,-255.312	0/1:66:27,39:27:972:39:1391:-105.62,0,-67.9086	1/1:127:0,127:0:0:127:4560:-410.565,-38.2308,0	1/1:67:0,67:0:0:67:2397:-215.985,-20.169,0	1/1:75:0,75:0:0:75:2685:-241.893,-22.5773,0	0/1:88:42,46:42:1508:46:1637:-121.126,0,-109.517	1/1:132:0,132:0:0:132:4695:-422.711,-39.736,0	1/1:166:0,166:0:0:166:5944:-535.065,-49.971,0	1/1:89:0,89:0:0:89:3173:-285.793,-26.7917,0	0/1:194:71,123:71:2544:123:4420:-339.57,0,-170.62	1/1:190:1,189:1:36:189:6770:-605.772,-53.5974,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:181:68,113:68:2436:113:4043:-309.57,0,-164.974	1/1:50:1,49:1:36:49:1743:-153.555,-11.4532,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:155:67,88:67:2404:88:3138:-235.985,0,-169.934	0/1:32:18,13:18:625:13:468:-32.7679,0,-46.8814	0/1:33:14,19:14:496:19:680:-51.5952,0,-35.0369	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	0/1:154:76,78:76:2723:78:2784:-204.441,0,-198.923	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:219:0,218:0:0:218:7801:-701.866,-65.6245,0	1/1:202:2,200:2:72:200:7155:-637.177,-53.9778,0	1/1:99:3,96:3:104:96:3444:-300.47,-20.0992,0	1/1:135:0,135:0:0:135:4825:-434.404,-40.6391,0	1/1:110:0,110:0:0:110:3925:-353.442,-33.1133,0	0/1:85:48,37:48:1716:37:1332:-94.5948,0,-129.13	1/1:82:1,81:1:36:81:2899:-257.547,-21.0862,0	1/1:74:0,74:0:0:74:2613:-235.416,-22.2762,0	0/1:126:65,61:65:2324:61:2192:-159.616,0,-171.484	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:106:1,105:1:36:105:3768:-335.714,-28.3109,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:86:0,86:0:0:86:3047:-274.41,-25.8886,0	1/1:175:0,175:0:0:175:6260:-563.493,-52.6803,0	0/1:138:62,76:62:2212:76:2715:-203.051,0,-157.785	0/1:105:37,68:37:1332:68:2435:-187.796,0,-88.3312	0/1:22:10,12:10:360:12:431:-32.508,0,-26.1039	1/1:113:2,111:2:72:111:3982:-351.744,-27.1909,0	1/1:166:0,166:0:0:166:5849:-526.528,-49.971,0	1/1:222:0,221:0:0:221:7880:-708.868,-66.5276,0	1/1:93:0,93:0:0:93:3255:-293.16,-27.9958,0	0/1:88:43,45:43:1540:45:1616:-119.239,0,-112.392	0/1:57:22,35:22:776:35:1245:-95.194,0,-53.0006	0/1:125:47,78:47:1679:78:2774:-212.27,0,-113.755	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:71:0,71:0:0:71:2539:-228.76,-21.3731,0	1/1:81:0,81:0:0:81:2899:-261.145,-24.3834,0	0/1:110:56,54:56:2012:54:1926:-140.503,0,-148.197	0/1:173:79,94:79:2831:94:3363:-250.808,0,-202.893	0/1:68:46,22:46:1643:22:783:-50.3229,0,-127.682	1/1:125:0,125:0:0:125:4467:-402.144,-37.6288,0	1/1:109:0,109:0:0:109:3888:-350.113,-32.8123,0
chr03	12661258	.	G	A	26235	PASS	AB=0.45536;ABP=66.7938;AC=32;AF=0.170213;AN=188;AO=1692;CIGAR=1X;DP=9920;DPB=9920;DPRA=1.23581;EPP=3677.14;EPPR=17865.5;GTI=0;LEN=1;MEANALT=1.02564;MQM=59.5071;MQMR=59.9869;NS=94;NUMALT=1;ODDS=7.46138;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59317;QR=292342;RO=8226;RPL=1692;RPP=3677.14;RPPR=17804.8;RPR=0;RUN=1;SAF=1692;SAP=3677.14;SAR=0;SRF=8219;SRP=17804.8;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:17,19:17:608:19:654:-48.3359,0,-44.2149	0/1:163:117,46:117:4168:46:1615:-95.3554,0,-326.234	0/1:135:71,64:71:2532:64:2251:-162.159,0,-187.407	0/0:228:227,1:227:8060:1:36:0,-65.0366,-721.825	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.662	0/0:68:68,0:68:2399:0:0:0,-20.47,-216.168	0/0:151:151,0:151:5396:0:0:0,-45.4555,-485.772	0/1:180:113,67:113:4033:67:2350:-157.514,0,-308.964	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/0:103:103,0:103:3639:0:0:0,-31.0061,-327.716	0/0:119:119,0:119:4234:0:0:0,-35.8226,-381.241	0/1:67:32,35:32:1135:35:1228:-90.6301,0,-82.2891	0/1:77:36,41:36:1292:41:1441:-106.761,0,-93.4045	0/0:110:110,0:110:3904:0:0:0,-33.1133,-351.554	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/0:94:94,0:94:3332:0:0:0,-28.2968,-300.098	0/0:59:59,0:59:2072:0:0:0,-17.7608,-186.749	0/0:64:64,0:64:2265:0:0:0,-19.2659,-204.111	0/0:282:282,0:282:10045:0:0:0,-84.8905,-903.986	0/0:153:153,0:153:5433:0:0:0,-46.0576,-489.103	0/1:111:33,78:33:1180:78:2743:-213.679,0,-73.0937	0/0:30:30,0:30:1057:0:0:0,-9.0309,-95.439	0/0:96:96,0:96:3403:0:0:0,-28.8989,-306.484	0/0:80:80,0:80:2845:0:0:0,-24.0824,-256.287	0/1:302:184,118:184:6541:118:4141:-281.781,0,-497.863	0/0:174:174,0:174:6158:0:0:0,-52.3792,-554.321	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/1:305:175,130:175:6235:130:4538:-316.768,0,-469.435	0/0:179:175,4:175:6251:4:131:0,-41.7818,-550.583	0/0:62:61,0:61:2172:0:0:0,-18.3628,-195.387	0/1:10:5,5:5:180:5:171:-12.7138,0,-13.5418	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:22:17,5:17:612:5:167:-8.73575,0,-48.7908	0/0:184:184,0:184:6579:0:0:0,-55.3895,-592.191	0/0:241:241,0:241:8577:0:0:0,-72.5482,-771.93	0/1:142:61,81:61:2171:81:2861:-214.929,0,-152.91	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:160:65,95:65:2322:95:3316:-250.447,0,-161.074	0/1:63:38,25:38:1356:25:888:-61.2612,0,-103.376	0/0:129:129,0:129:4595:0:0:0,-38.8329,-413.714	0/0:66:66,0:66:2325:0:0:0,-19.868,-209.509	0/0:71:71,0:71:2506:0:0:0,-21.3731,-225.791	0/1:87:46,41:46:1626:41:1438:-103.521,0,-120.435	0/0:133:133,0:133:4707:0:0:0,-40.037,-423.792	0/0:169:169,0:169:5964:0:0:0,-50.8741,-536.87	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:187:122,65:122:4367:65:2274:-148.603,0,-336.911	0/0:181:181,0:181:6430:0:0:0,-54.4864,-578.79	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/1:181:112,68:112:3998:68:2406:-162.216,0,-305.464	0/0:49:48,1:48:1694:1:32:0,-11.5512,-149.545	0/0:24:24,0:24:840:0:0:0,-7.22472,-75.9154	0/1:155:87,68:87:3078:68:2371:-166.98,0,-230.588	0/1:29:13,16:13:464:16:551:-41.1846,0,-33.3676	0/1:31:18,13:18:629:13:464:-32.7622,0,-47.6018	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:73:73,0:73:2602:0:0:0,-21.9752,-234.428	0/1:155:77,78:77:2742:78:2753:-201.328,0,-200.362	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:214:214,0:214:7608:0:0:0,-64.4204,-684.758	0/0:200:198,2:198:7085:2:72:0,-53.3758,-630.878	0/0:100:97,3:97:3484:3:104:0,-20.4002,-304.067	0/0:136:136,0:136:4831:0:0:0,-40.9401,-434.946	0/0:114:114,0:114:4038:0:0:0,-34.3174,-363.611	0/1:85:38,47:38:1353:47:1637:-122.022,0,-96.4808	0/0:80:79,1:79:2831:1:36:0,-20.4841,-251.43	0/0:72:72,0:72:2562:0:0:0,-21.6742,-230.829	0/1:124:59,65:59:2120:65:2287:-168.756,0,-153.741	0/0:44:44,0:44:1548:0:0:0,-13.2453,-139.583	0/0:103:103,0:103:3630:0:0:0,-31.0061,-326.906	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/0:83:83,0:83:2938:0:0:0,-24.9855,-264.655	0/0:173:173,0:173:6175:0:0:0,-52.0782,-555.85	0/1:132:74,58:74:2639:58:1999:-140.442,0,-198.021	0/1:102:63,39:63:2235:39:1350:-91.0282,0,-170.709	0/1:21:12,9:12:432:9:312:-22.076,0,-32.8996	0/0:112:110,2:110:3927:2:72:0,-26.8898,-346.797	0/0:167:167,0:167:5862:0:0:0,-50.272,-527.699	0/0:223:223,0:223:7920:0:0:0,-67.1297,-712.828	0/0:95:95,0:95:3326:0:0:0,-28.5978,-299.529	0/1:88:45,43:45:1608:43:1540:-112.392,0,-118.519	0/1:57:34,23:34:1203:23:799:-55.0623,0,-91.4163	0/1:125:77,48:77:2723:48:1669:-112.853,0,-207.683	0/0:38:38,0:38:1334:0:0:0,-11.4391,-120.358	0/0:72:72,0:72:2531:0:0:0,-21.6742,-228.04	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.587	0/1:111:53,58:53:1850:58:2049:-151.232,0,-133.362	0/1:174:92,82:92:3261:82:2902:-208.981,0,-241.332	0/1:68:20,48:20:708:48:1669:-130.023,0,-43.5756	0/0:129:129,0:129:4575:0:0:0,-38.8329,-411.861	0/0:105:105,0:105:3729:0:0:0,-31.6081,-335.812
chr03	13193591	.	C	G	15173.3	PASS	AB=0.514105;ABP=6.01186;AC=32;AF=0.170213;AN=188;AO=897;CIGAR=1X;DP=4659;DPB=4659;DPRA=1.18271;EPP=1916.23;EPPR=8014.24;GTI=0;LEN=1;MEANALT=1.02857;MQM=59.9632;MQMR=59.984;NS=94;NUMALT=1;ODDS=1.49119;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32062;QR=131218;RO=3757;RPL=4;RPP=1916.23;RPPR=8022.85;RPR=893;RUN=1;SAF=897;SAP=1950.82;SAR=0;SRF=3756;SRP=8152.55;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:11,15:11:367:15:536:-40.748,0,-25.5257	0/1:46:14,32:14:487:32:1152:-90.1428,0,-30.3118	0/1:64:40,24:40:1362:24:855:-57.7337,0,-103.606	0/0:104:104,0:104:3589:0:0:0,-31.3071,-323.227	0/0:31:30,0:30:1060:0:0:0,-9.0309,-95.4967	0/0:27:27,0:27:951:0:0:0,-8.12781,-85.9043	0/0:65:65,0:65:2259:0:0:0,-19.5669,-203.575	0/1:69:37,32:37:1295:32:1148:-82.8588,0,-96.0792	0/0:34:34,0:34:1150:0:0:0,-10.235,-103.801	0/0:38:38,0:38:1344:0:0:0,-11.4391,-121.26	0/0:34:34,0:34:1191:0:0:0,-10.235,-107.494	0/1:104:53,51:53:1813:51:1809:-131.779,0,-132.142	0/1:46:23,23:23:816:23:820:-60.2751,0,-59.9143	0/0:31:31,0:31:1057:0:0:0,-9.33193,-95.4342	0/0:55:55,0:55:1929:0:0:0,-16.5566,-173.885	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/0:61:61,0:61:2118:0:0:0,-18.3628,-190.889	0/0:110:110,0:110:3839:0:0:0,-33.1133,-345.716	0/1:70:31,39:31:1088:39:1392:-104.507,0,-77.1571	0/0:68:68,0:68:2385:0:0:0,-20.47,-214.907	0/0:23:23,0:23:792:0:0:0,-6.92369,-71.5969	0/0:32:32,0:32:1116:0:0:0,-9.63296,-100.747	0/1:138:53,85:53:1831:85:3038:-232.107,0,-123.528	0/0:84:84,0:84:2926:0:0:0,-25.2865,-263.579	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/1:96:49,47:49:1716:47:1684:-122.948,0,-125.826	0/0:55:55,0:55:1939:0:0:0,-16.5566,-174.786	0/0:49:49,0:49:1699:0:0:0,-14.7505,-153.195	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/0:138:138,0:138:4865:0:0:0,-41.5421,-437.998	0/0:65:64,0:64:2259:0:0:0,-19.2659,-203.213	0/1:37:17,20:17:600:20:720:-53.9907,0,-43.1911	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/1:55:34,21:34:1184:21:740:-50.3667,0,-90.308	0/1:25:11,14:11:383:14:504:-38.1723,0,-27.2775	0/0:79:79,0:79:2754:0:0:0,-23.7814,-248.105	0/0:50:50,0:50:1766:0:0:0,-15.0515,-159.222	0/0:53:53,0:53:1850:0:0:0,-15.9546,-166.779	0/1:60:36,24:36:1234:24:856:-59.2993,0,-93.2979	0/0:85:85,0:85:2948:0:0:0,-25.5875,-265.558	0/0:90:90,0:90:3147:0:0:0,-27.0927,-283.461	0/0:57:55,1:55:1907:1:36:0,-13.6192,-168.309	0/1:53:19,34:19:664:34:1220:-94.1522,0,-44.1299	0/0:66:66,0:66:2307:0:0:0,-19.868,-207.892	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/1:66:30,36:30:1048:36:1286:-96.1753,0,-74.7621	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4154	0/1:60:26,34:26:887:34:1209:-91.0532,0,-62.0796	0/1:21:12,9:12:420:9:324:-23.1842,0,-31.8124	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:61:61,0:61:2127:0:0:0,-18.3628,-191.699	0/1:93:50,43:50:1759:43:1529:-109.905,0,-130.597	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:72:72,0:72:2535:0:0:0,-21.6742,-228.403	0/0:82:82,0:82:2878:0:0:0,-24.6845,-259.259	0/0:30:30,0:30:1056:0:0:0,-9.0309,-95.3509	0/0:35:35,0:35:1223:0:0:0,-10.536,-110.373	0/0:97:95,2:95:3351:2:72:0,-22.3632,-294.974	0/1:92:37,55:37:1298:55:1963:-149.25,0,-89.4249	0/0:18:18,0:18:627:0:0:0,-5.41854,-56.7544	0/0:29:29,0:29:999:0:0:0,-8.72987,-90.2191	0/1:29:14,15:14:500:15:531:-39.3927,0,-36.6063	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:72:72,0:72:2446:0:0:0,-21.6742,-220.4	0/0:17:16,0:16:550:0:0:0,-4.81648,-49.4645	0/0:53:52,0:52:1815:0:0:0,-15.6536,-163.271	0/0:48:48,0:48:1684:0:0:0,-14.4494,-151.846	0/1:57:35,22:35:1186:22:788:-54.0861,0,-89.8815	0/1:49:32,17:32:1124:17:612:-40.663,0,-86.7175	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:30:29,1:29:1020:1:36:0,-5.43262,-88.5139	0/0:52:52,0:52:1819:0:0:0,-15.6536,-163.991	0/0:100:100,0:100:3499:0:0:0,-30.103,-315.125	0/0:43:43,0:43:1490:0:0:0,-12.9443,-134.392	0/1:41:18,23:18:648:23:828:-62.5019,0,-46.3097	0/1:29:19,10:19:672:10:360:-24.0144,0,-52.077	0/1:99:47,52:47:1668:52:1868:-138.597,0,-120.605	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:57:57,0:57:1991:0:0:0,-17.1587,-179.464	0/0:58:58,0:58:2010:0:0:0,-17.4597,-181.173	0/1:30:19,11:19:653:11:396:-26.9518,0,-50.0584	0/1:71:34,37:34:1182:37:1319:-97.638,0,-85.3099	0/1:87:32,55:32:1140:55:1963:-150.755,0,-76.7196	0/0:49:49,0:49:1711:0:0:0,-14.7505,-153.784	0/0:84:84,0:84:2942:0:0:0,-25.2865,-265.016
chr03	13370685	.	T	C	21664.8	PASS	AB=0.476019;ABP=16.8621;AC=33;AF=0.175532;AN=188;AO=1327;CIGAR=1X;DP=7364;DPB=7364;DPRA=1.14012;EPP=2849.92;EPPR=13006;GTI=1;LEN=1;MEANALT=1.02703;MQM=59.8779;MQMR=59.9833;NS=94;NUMALT=1;ODDS=1.67915;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47053;QR=215771;RO=6036;RPL=4;RPP=2849.92;RPPR=13006;RPR=1323;RUN=1;SAF=1327;SAP=2884.55;SAR=0;SRF=6036;SRP=13110;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:38,43:38:1360:43:1521:-112.798,0,-98.3172	0/1:45:26,19:26:932:19:653:-45.5429,0,-70.6525	0/1:161:107,54:107:3829:54:1916:-124.252,0,-296.339	0/0:224:224,0:224:8020:0:0:0,-67.4307,-721.82	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.8	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:131:82,48:82:2921:48:1696:-113.431,0,-223.63	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:90:42,48:42:1503:48:1712:-127.273,0,-108.471	0/1:88:43,45:43:1548:45:1583:-116.266,0,-113.122	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.723	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.486	0/1:91:32,59:32:1129:59:2096:-161.516,0,-74.5226	0/0:75:75,0:75:2664:0:0:0,-22.5772,-240.007	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:126:66,60:66:2360:60:2148:-155.658,0,-174.721	0/0:233:233,0:233:8287:0:0:0,-70.14,-745.841	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:205:96,109:96:3452:109:3872:-286.956,0,-249.18	0/0:128:126,2:126:4490:2:72:0,-31.6951,-397.431	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:22:17,5:17:608:5:169:-8.89951,0,-48.4294	0/0:168:168,0:168:6003:0:0:0,-50.573,-540.376	0/0:120:118,2:118:4212:2:72:0,-29.2869,-372.423	0/1:65:33,32:33:1188:32:1136:-82.9819,0,-87.6616	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:91:60,31:60:2137:31:1100:-71.9166,0,-165.202	0/1:31:15,16:15:532:16:567:-42.0288,0,-38.8812	0/0:193:193,0:193:6911:0:0:0,-58.0988,-622.056	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:72:47,25:47:1692:25:881:-57.9304,0,-130.893	0/0:135:135,0:135:4817:0:0:0,-40.639,-433.495	0/0:145:145,0:145:5167:0:0:0,-43.6493,-465.168	0/0:53:53,0:53:1880:0:0:0,-15.9546,-169.476	0/1:116:61,55:61:2167:55:1952:-141.036,0,-160.377	0/0:92:92,0:92:3276:0:0:0,-27.6948,-295.059	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:87:48,39:48:1724:39:1380:-98.3091,0,-129.256	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:111:59,52:59:2108:52:1813:-129.962,0,-156.575	0/1:18:4,14:4:144:14:500:-39.9176,0,-7.89508	0/1:24:18,6:18:621:6:216:-12.5658,0,-48.9861	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.751	0/1:128:60,68:60:2160:68:2415:-179.058,0,-156.135	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:127:127,0:127:4510:0:0:0,-38.2308,-406.068	0/0:158:158,0:158:5656:0:0:0,-47.5627,-508.967	0/1:60:54,6:54:1936:6:212:-1.363,0,-156.455	0/0:79:79,0:79:2829:0:0:0,-23.7814,-254.847	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:142:56,86:56:1999:86:3056:-232.525,0,-137.437	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.776	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:42:17,25:17:604:25:896:-68.3171,0,-42.0473	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:119:119,0:119:4215:0:0:0,-35.8226,-379.529	0/0:92:92,0:92:3293:0:0:0,-27.6948,-296.587	0/0:148:148,0:148:5293:0:0:0,-44.5524,-476.504	0/0:129:129,0:129:4627:0:0:0,-38.8329,-416.591	0/1:144:79,65:79:2794:65:2302:-164.092,0,-208.35	0/1:97:55,42:55:1948:42:1483:-104.564,0,-146.396	0/1:16:10,6:10:360:6:212:-14.6083,0,-27.9278	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:87:87,0:87:3093:0:0:0,-26.1896,-278.597	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:81:40,41:40:1436:41:1455:-106.861,0,-105.154	0/1:35:19,16:19:680:16:563:-40.4608,0,-50.9931	0/1:121:53,68:53:1904:68:2401:-179.693,0,-135.213	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:60:58,2:58:2084:2:72:0,-11.2251,-180.993	0/0:51:50,1:50:1796:1:36:0,-11.7543,-158.324	0/1:61:31,30:31:1100:30:1072:-78.4296,0,-80.9475	0/1:142:65,77:65:2319:77:2756:-205.479,0,-166.224	0/1:42:13,29:13:468:29:1031:-80.4594,0,-29.8164	0/0:97:97,0:97:3475:0:0:0,-29.1999,-312.961	0/0:83:83,0:83:2967:0:0:0,-24.9855,-267.263
chr03	13594059	.	T	C	57719.9	PASS	AB=0.56424;ABP=36.4891;AC=155;AF=0.833333;AN=186;AO=2631;CIGAR=1X;DP=3043;DPB=3043;DPRA=33.0652;EPP=5698.8;EPPR=888.971;GTI=3;LEN=1;MEANALT=1.04348;MQM=59.9875;MQMR=60;NS=93;NUMALT=1;ODDS=0.757743;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93847;QR=14634;RO=408;RPL=1;RPP=5707.47;RPPR=888.971;RPR=2630;RUN=1;SAF=2630;SAP=5707.47;SAR=1;SRF=408;SRP=888.971;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:13,21:13:464:21:756:-58.1322,0,-31.8625	0/1:31:10,21:10:347:21:739:-57.5004,0,-22.2317	0/1:31:12,19:12:432:19:684:-52.5584,0,-29.8893	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	1/1:28:0,28:0:0:28:995:-89.864,-8.42884,0	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	1/1:32:0,32:0:0:32:1121:-101.196,-9.63296,0	0/1:30:10,20:10:360:20:704:-54.6531,0,-23.7134	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:25:0,25:0:0:25:884:-79.8778,-7.52575,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/1:47:22,25:22:788:25:896:-66.8119,0,-57.0964	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:90:0,90:0:0:90:3190:-287.322,-27.0927,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:53:33,20:33:1175:20:720:-49.1742,0,-90.1024	1/1:75:0,75:0:0:75:2667:-240.276,-22.5773,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	0/1:86:27,59:27:968:59:2071:-160.77,0,-61.5488	1/1:76:0,76:0:0:76:2712:-244.324,-22.8783,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:85:28,55:28:1008:55:1964:-151.69,0,-65.691	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:70:0,70:0:0:70:2492:-224.531,-21.0721,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:245:-22.3907,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:47:14,33:14:500:33:1180:-92.3596,0,-31.1878	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/1:45:17,28:17:612:28:1003:-77.0385,0,-41.8671	1/1:47:0,47:0:0:47:1665:-150.135,-14.1484,0	1/1:66:0,66:0:0:66:2327:-209.687,-19.868,0	1/1:29:0,29:0:0:29:1035:-93.4631,-8.72987,0	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:45:18,27:18:648:27:955:-72.7185,0,-45.1055	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:46:18,28:18:644:28:987:-75.2957,0,-44.4432	0/1:25:13,11:13:468:11:392:-28.1732,0,-35.0142	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:50:0,50:0:0:50:1788:-161.201,-15.0515,0	0/1:42:23,19:23:828:19:684:-49.2471,0,-62.2009	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:52:0,52:0:0:52:1854:-167.139,-15.6536,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:35:0,35:0:0:35:1251:-112.894,-10.5361,0	1/1:64:1,63:1:36:63:2260:-200.064,-15.6676,0	0/1:40:23,17:23:828:17:608:-43.0108,0,-62.8029	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	0/1:22:15,7:15:536:7:244:-15.6768,0,-41.9522	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:21:0,21:0:0:21:740:-66.9234,-6.32163,0	1/1:70:0,70:0:0:70:2502:-225.432,-21.0721,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	0/1:21:3,18:3:108:18:636:-51.2464,0,-3.75354	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:43:1,42:1:36:42:1504:-132.056,-9.34602,0	1/1:31:0,31:0:0:31:1091:-98.4987,-9.33193,0	1/1:60:1,58:1:36:58:2071:-183.061,-14.5223,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:13:7,6:7:248:6:210:-15.3044,0,-18.7508	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:36:0,36:0:0:36:1267:-114.331,-10.8371,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/1:24:18,6:18:648:6:212:-12.2001,0,-51.4272	1/1:43:0,43:0:0:43:1513:-136.461,-12.9443,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0
chr03	13749912	.	AGCAA	AGCAG	136604	PASS	AB=0.465026;ABP=38.4012;AC=154;AF=0.827957;AN=186;AO=6404;CIGAR=4M1X;DP=8243;DPB=8249.6;DPRA=0;EPP=13909.1;EPPR=3813.95;GTI=3;LEN=1;MEANALT=1.53763;MQM=59.8399;MQMR=43.137;NS=93;NUMALT=1;ODDS=1.19351;PAIRED=0;PAIREDR=0;PAO=12.5;PQA=423.5;PQR=0;PRO=6;QA=228031;QR=62523;RO=1759;RPL=1;RPP=13900.4;RPPR=3822.63;RPR=6403;RUN=1;SAF=6403;SAP=13900.4;SAR=1;SRF=1758;SRP=3813.95;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:28,22:28:988:22:777:-55.1989,0,-73.3218	0/1:64:33,31:33:1166:31:1097:-79.4364,0,-84.1989	0/1:282:149,132:149:5291:132:4696:-337.85,0,-385.323	1/1:141:0,141:0:0:141:5012:-451.004,-42.4452,0	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	1/1:16:0,14:0:0:14:504:-45.3383,-4.21442,0	1/1:51:0,51:0:0:51:1794:-161.716,-15.3525,0	0/1:118:32,86:32:1131:86:3073:-240.899,0,-65.6748	1/1:57:0,57:0:0:57:2028:-182.733,-17.1587,0	1/1:60:0,60:0:0:60:2125:-191.429,-18.0618,0	1/1:83:0,82:0:0:82:2906:-261.38,-24.6845,0	0/1:108:60,47:60:2144:47:1673:-117.745,0,-157.153	0/1:80:44,35:44:1566:35:1260:-89.5757,0,-115.702	1/1:112:0,111:0:0:111:3958:-356.049,-33.4143,0	1/1:59:0,58:0:0:58:2073:-186.42,-17.4597,0	1/1:76:0,74:0:0:74:2660:-239.285,-22.2762,0	1/1:62:0,62:0:0:62:2213:-199.433,-18.6639,0	1/1:26:0,24:0:0:24:845:-76.0084,-7.22472,0	1/1:65:0,63:0:0:63:2260:-203.308,-18.9649,0	1/1:130:0,130:0:0:130:4613:-415.323,-39.1339,0	1/1:108:0,108:0:0:108:3834:-345.233,-32.5112,0	0/1:61:46,15:46:1631:15:521:-28.8535,0,-117.784	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:60:0,60:0:0:60:2126:-191.605,-18.0618,0	1/1:61:1,60:1:36:60:2111:-186.807,-15.0045,0	0/1:148:52,92:52:1856:92:3255:-249.119,0,-114.803	1/1:291:0,291:0:0:291:10358:-932.016,-87.5997,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:285:156,129:156:5539:129:4591:-326.37,0,-387.832	1/1:144:2,141:2:72:141:5022:-445.324,-36.6291,0	1/1:71:0,71:0:0:71:2546:-229.39,-21.3731,0	0/1:15:6,9:6:195:9:293:-22.1664,0,-12.9627	1/1:30:0,30:0:0:30:1080:-97.5086,-9.0309,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:23:0,23:0:0:23:801:-72.4067,-6.92369,0	0/1:31:17,14:17:612:14:504:-36.3662,0,-45.441	1/1:156:0,154:0:0:154:5441:-489.425,-46.3586,0	1/1:88:0,87:0:0:87:3103:-279.054,-26.1896,0	0/1:86:54,32:54:1910:32:1115:-74.7636,0,-144.021	.:.:.:.:.:.:.:.	0/1:118:67,51:67:2388:51:1783:-125.223,0,-176.715	0/1:58:28,29:28:996:29:1027:-75.3606,0,-71.4017	1/1:151:1,150:1:35:150:5310:-474.474,-41.9821,0	1/1:57:0,51:0:0:51:1821:-163.696,-15.3525,0	1/1:65:0,61:0:0:61:2165:-194.741,-18.3628,0	0/1:128:80,47:80:2827:47:1688:-113.616,0,-203.058	1/1:104:0,104:0:0:104:3725:-335.391,-31.3071,0	1/1:127:0,126:0:0:126:4516:-406.191,-37.9298,0	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	0/1:107:44,61:44:1559:61:2181:-164.598,0,-101.027	1/1:192:0,191:0:0:191:6779:-609.816,-57.4967,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:149:69,80:69:2450:80:2880:-214.582,0,-173.874	1/1:81:0,81:0:0:81:2886:-259.889,-24.3834,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:206:121,85:121:4313:85:3037:-211.546,0,-321.385	0/1:28:11,17:11:389:17:612:-46.9846,0,-25.3125	0/1:20:8,11:8:283:11:392:-29.4812,0,-18.5083	1/1:10:0,10:0:0:10:346:-31.188,-3.0103,0	1/1:100:0,98:0:0:98:3467:-311.588,-29.5009,0	0/1:153:80,64:80:2862:64:2296:-163.133,0,-199.594	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:102:0,101:0:0:101:3607:-324.551,-30.404,0	1/1:152:1,148:1:36:148:5272:-470.683,-41.7765,0	1/1:121:5,113:5:180:113:4029:-346.34,-19.4421,0	1/1:111:0,111:0:0:111:3963:-356.829,-33.4143,0	1/1:110:0,110:0:0:110:3918:-352.809,-33.1133,0	0/1:172:94,77:94:3346:77:2762:-196.998,0,-231.393	1/1:88:0,88:0:0:88:3122:-280.003,-26.4906,0	1/1:37:0,37:0:0:37:1313:-118.452,-11.1381,0	0/1:71:46,24:46:1636:24:864:-56.6602,0,-117.443	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:151:0,151:0:0:151:5353:-481.586,-45.4555,0	1/1:76:0,76:0:0:76:2689:-242.223,-22.8783,0	1/1:62:0,62:0:0:62:2209:-199.073,-18.6639,0	1/1:111:0,110:0:0:110:3914:-352.238,-33.1133,0	0/1:113:74,38:74:2606:38:1368:-89.3456,0,-197.122	0/1:88:28,57:28:993:57:2014:-155.425,0,-62.9888	0/1:22:15,7:15:534:7:245:-15.7676,0,-41.3714	1/1:91:0,91:0:0:91:3216:-289.576,-27.3937,0	1/1:109:0,106:0:0:106:3800:-341.869,-31.9092,0	1/1:131:0,130:0:0:130:4649:-418.149,-39.1339,0	1/1:48:0,48:0:0:48:1724:-155.365,-14.4494,0	0/1:75:45,28:45:1618:28:1004:-68.3642,0,-114.56	0/1:34:21,13:21:747:13:468:-31.8737,0,-53.7904	0/1:99:44,54:44:1573:54:1944:-145.347,0,-105.183	1/1:21:0,21:0:0:21:756:-68.3447,-6.32163,0	1/1:61:0,59:0:0:59:2101:-188.998,-17.7608,0	1/1:76:0,74:0:0:74:2617:-235.411,-22.2762,0	0/1:97:52,43:52:1860:43:1536:-109.555,0,-135.028	0/1:200:105,94:105:3743:94:3365:-242.793,0,-271.639	0/1:65:40,25:40:1412:25:892:-61.0327,0,-101.639	1/1:47:0,47:0:0:47:1673:-150.849,-14.1484,0	1/1:113:0,111:0:0:111:3987:-358.432,-33.4143,0
chr03	13749939	.	A	G	28808.7	PASS	AB=0.522334;ABP=17.2684;AC=32;AF=0.172043;AN=186;AO=1731;CIGAR=1X;DP=8214;DPB=8214;DPRA=1.3907;EPP=3480.66;EPPR=13587.8;GTI=1;LEN=1;MEANALT=1.02632;MQM=43.0578;MQMR=59.8283;NS=93;NUMALT=1;ODDS=0.132564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61817;QR=232365;RO=6482;RPL=34;RPP=3472.31;RPPR=13587.8;RPR=1697;RUN=1;SAF=1730;SAP=3753.15;SAR=1;SRF=6482;SRP=14078.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:22,29:22:788:29:1028:-76.1418,0,-55.8923	0/1:62:30,32:30:1080:32:1144:-82.8048,0,-78.5137	0/1:277:131,146:131:4692:146:5215:-379.947,0,-339.055	0/0:143:143,0:143:5112:0:0:0,-43.0473,-459.82	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.553	0/1:117:86,31:86:3073:31:1108:-63.9128,0,-241.2	0/0:56:56,0:56:2007:0:0:0,-16.8577,-180.903	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.276	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.866	0/1:106:48,58:48:1728:58:2053:-149.834,0,-123.118	0/1:79:35,44:35:1245:44:1584:-117.51,0,-88.5713	0/0:114:114,0:114:4077:0:0:0,-34.3174,-367.114	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.481	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1882	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.027	0/0:131:131,0:131:4697:0:0:0,-39.4349,-422.878	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.825	0/1:61:15,46:15:540:46:1652:-118.718,0,-30.5737	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:61:60,1:60:2156:1:36:0,-14.796,-190.695	0/1:149:98,51:98:3528:51:1828:-110.304,0,-272.504	0/0:291:291,0:291:10433:0:0:0,-87.5997,-938.876	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:281:130,150:130:4636:150:5353:-372.097,0,-331.565	0/0:141:139,2:139:4992:2:72:0,-35.6683,-442.627	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/1:14:9,5:9:320:5:169:-11.1451,0,-24.9148	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7878	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:31:14,17:14:500:17:612:-45.441,0,-36.0042	0/0:155:155,0:155:5576:0:0:0,-46.6596,-501.956	0/0:87:87,0:87:3113:0:0:0,-26.1896,-280.394	0/1:84:31,53:31:1108:53:1892:-142.766,0,-74.7411	.:.:.:.:.:.:.:.	0/1:116:50,66:50:1796:66:2356:-174.347,0,-126.992	0/1:59:30,29:30:1076:29:1032:-74.1467,0,-79.3696	0/0:152:151,1:151:5424:1:36:0,-42.1897,-484.692	0/0:58:58,0:58:2076:0:0:0,-17.4597,-186.165	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:125:48,77:48:1728:77:2756:-197.309,0,-118.177	0/0:104:104,0:104:3725:0:0:0,-31.3071,-335.446	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.625	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:108:64,44:64:2304:44:1580:-102.053,0,-175.073	0/0:189:189,0:189:6742:0:0:0,-56.8947,-606.845	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:145:78,67:78:2800:67:2391:-169.687,0,-208.59	0/0:82:82,0:82:2917:0:0:0,-24.6845,-262.764	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:199:85,114:85:3033:114:4080:-303.597,0,-213.224	0/1:28:17,11:17:612:11:392:-25.5321,0,-46.9846	0/1:20:12,8:12:432:8:288:-18.9717,0,-33.196	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.1194	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.298	0/1:152:68,84:68:2444:84:2979:-207.506,0,-174.356	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:98:98,0:98:3497:0:0:0,-29.5009,-314.911	0/0:151:150,1:150:5400:1:36:0,-42.0319,-482.201	0/0:117:112,5:112:4012:5:180:0,-18.7842,-344.81	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.364	0/0:110:110,0:110:3921:0:0:0,-33.1133,-353.081	0/1:169:76,93:76:2736:93:3343:-230.604,0,-195.6	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.553	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.519	0/1:69:24,45:24:864:45:1616:-116.223,0,-57.3115	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0541	0/0:153:153,0:153:5473:0:0:0,-46.0576,-492.273	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.434	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/1:114:41,73:41:1464:73:2574:-193.922,0,-97.7386	0/1:88:60,28:60:2133:28:1004:-63.3809,0,-165.588	0/1:21:7,14:7:252:14:504:-38.9769,0,-16.7073	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.416	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.747	0/0:133:133,0:133:4768:0:0:0,-40.037,-429.218	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.507	0/1:75:29,46:29:1036:46:1635:-116.13,0,-70.9767	0/1:33:13,20:13:464:20:720:-51.9631,0,-32.1635	0/1:99:55,44:55:1964:44:1563:-104.345,0,-147.23	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3447	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:75:75,0:75:2681:0:0:0,-22.5772,-241.516	0/1:96:46,50:46:1648:50:1791:-128.817,0,-119.684	0/1:198:93,105:93:3344:105:3748:-272.929,0,-241.535	0/1:65:26,39:26:928:39:1395:-99.6832,0,-64.2713	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.485	0/0:112:110,2:110:3952:2:72:0,-26.8786,-349.033
chr03	13749948	.	C	G	27263	PASS	AB=0.521527;ABP=16.1923;AC=32;AF=0.172043;AN=186;AO=1718;CIGAR=1X;DP=8198;DPB=8198;DPRA=1.37269;EPP=3716.25;EPPR=13970.1;GTI=1;LEN=1;MEANALT=1.02703;MQM=43.0029;MQMR=59.8493;NS=93;NUMALT=1;ODDS=0.421602;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61267;QR=231170;RO=6476;RPL=1716;RPP=3716.25;RPPR=13961.4;RPR=2;RUN=1;SAF=1718;SAP=3733.6;SAR=0;SRF=6475;SRP=14056.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:22,27:22:788:27:968:-71.4026,0,-56.4943	0/1:63:31,32:31:1108:32:1148:-82.8472,0,-80.7304	0/1:277:132,145:132:4702:145:5177:-376.133,0,-339.956	0/0:142:142,0:142:5055:0:0:0,-42.7463,-454.873	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.044	0/1:117:85,31:85:3040:31:1104:-63.6668,0,-238.695	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.106	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.938	0/1:106:47,59:47:1669:59:2116:-155.367,0,-117.808	0/1:79:34,45:34:1224:45:1593:-118.485,0,-86.6857	0/0:115:115,0:115:4092:0:0:0,-34.6184,-368.464	0/0:59:59,0:59:2084:0:0:0,-17.7608,-187.828	0/0:76:76,0:76:2721:0:0:0,-22.8783,-245.13	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5488	0/0:68:68,0:68:2422:0:0:0,-20.47,-218.235	0/0:131:131,0:131:4679:0:0:0,-39.4349,-421.267	0/0:109:108,0:108:3846:0:0:0,-32.5112,-346.125	0/1:61:15,46:15:531:46:1631:-117.434,0,-29.7591	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:60:59,1:59:2103:1:36:0,-14.495,-185.941	0/1:145:95,50:95:3387:50:1779:-107.814,0,-261.026	0/0:290:290,0:290:10320:0:0:0,-87.2987,-928.719	0/0:30:30,0:30:1062:0:0:0,-9.0309,-95.89	0/1:278:129,149:129:4594:149:5333:-371.029,0,-329.94	0/0:145:143,2:143:5103:2:72:0,-36.8724,-452.615	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:14:8,6:8:288:6:208:-13.9788,0,-22.0506	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5493	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0316	0/1:30:14,16:14:504:16:576:-42.5318,0,-36.6672	0/0:157:157,0:157:5618:0:0:0,-47.2617,-505.736	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.491	0/1:86:32,54:32:1128:54:1906:-143.399,0,-75.9336	.:.:.:.:.:.:.:.	0/1:114:50,64:50:1749:64:2300:-169.856,0,-123.369	0/1:57:29,28:29:1022:28:995:-71.5164,0,-75.1097	0/0:151:150,1:150:5348:1:36:0,-41.8887,-477.871	0/0:58:58,0:58:2065:0:0:0,-17.4597,-185.483	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/1:122:47,75:47:1672:75:2684:-192.008,0,-114.042	0/0:103:103,0:103:3687:0:0:0,-31.0061,-332.03	0/0:129:129,0:129:4599:0:0:0,-38.8329,-414.036	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/1:107:63,44:63:2237:44:1576:-101.594,0,-169.346	0/0:189:189,0:189:6756:0:0:0,-56.8947,-608.107	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:147:80,67:80:2867:67:2404:-170.271,0,-214.015	0/0:83:83,0:83:2967:0:0:0,-24.9855,-267.176	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:202:85,117:85:3056:117:4158:-309.533,0,-214.391	0/1:27:17,10:17:604:10:352:-22.4763,0,-46.5628	0/1:21:13,8:13:456:8:288:-18.6707,0,-35.0498	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.1194	0/0:99:99,0:99:3548:0:0:0,-29.802,-318.932	0/1:151:67,84:67:2393:84:2989:-208.115,0,-170.14	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:101:101,0:101:3602:0:0:0,-30.404,-324.375	0/0:151:150,1:150:5379:1:36:0,-42.0319,-480.314	0/0:117:112,5:112:3999:5:180:0,-18.7842,-343.664	0/0:110:109,0:109:3912:0:0:0,-32.8123,-351.944	0/0:108:108,0:108:3851:0:0:0,-32.5112,-346.785	0/1:172:78,94:78:2796:94:3359:-231.351,0,-200.095	0/0:90:90,0:90:3183:0:0:0,-27.0927,-286.294	0/0:37:37,0:37:1298:0:0:0,-11.1381,-117.117	0/1:67:24,43:24:856:43:1521:-108.686,0,-57.1921	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7102	0/0:152:152,0:152:5405:0:0:0,-45.7566,-486.266	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.728	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.983	0/0:111:111,0:111:3958:0:0:0,-33.4143,-356.411	0/1:113:40,73:40:1432:73:2590:-195.823,0,-95.1612	0/1:87:60,27:60:2140:27:957:-59.512,0,-166.608	0/1:21:7,14:7:252:14:500:-38.6319,0,-16.7073	0/0:92:92,0:92:3281:0:0:0,-27.6948,-295.486	0/0:111:111,0:111:3979:0:0:0,-33.4143,-358.297	0/0:132:131,0:131:4704:0:0:0,-39.4349,-423.156	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.034	0/1:73:29,44:29:1040:44:1559:-110.088,0,-71.9392	0/1:33:13,20:13:464:20:712:-51.4491,0,-32.1635	0/1:97:55,42:55:1976:42:1508:-100.411,0,-148.907	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3447	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:98:46,52:46:1652:52:1859:-134.293,0,-119.442	0/1:196:94,102:94:3376:102:3633:-263.304,0,-245.038	0/1:65:25,40:25:900:40:1424:-102.505,0,-61.7541	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.602	0/0:112:112,0:112:4006:0:0:0,-33.7154,-360.728
chr03	13749969	.	A	G	50310.1	PASS	AB=0.490204;ABP=7.00928;AC=32;AF=0.170213;AN=188;AO=2383;CIGAR=1X;DP=13489;DPB=13489;DPRA=1.1985;EPP=5177.63;EPPR=24110.7;GTI=0;LEN=1;MEANALT=1.06;MQM=52.3907;MQMR=59.9307;NS=94;NUMALT=1;ODDS=7.29597;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84342;QR=391011;RO=11102;RPL=794;RPP=578.933;RPPR=29.4983;RPR=1589;RUN=1;SAF=794;SAP=578.933;SAR=1589;SRF=5367;SRP=29.4983;SRR=5735;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:43,21:43:1513:21:752:-48.0973,0,-117.195	0/1:174:94,79:94:3318:79:2818:-201.053,0,-246.388	0/1:208:136,72:136:4743:72:2499:-160.991,0,-364.423	0/0:243:243,0:243:8612:0:0:0,-73.1503,-775.064	0/0:104:104,0:104:3691:0:0:0,-31.3071,-332.392	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.442	0/0:136:136,0:136:4769:0:0:0,-40.9401,-429.352	0/1:196:113,83:113:3966:83:2945:-205.935,0,-297.761	0/0:158:158,0:158:5583:0:0:0,-47.5627,-502.596	0/0:148:148,0:148:5228:0:0:0,-44.5524,-470.664	0/0:141:141,0:141:4945:0:0:0,-42.4452,-445.207	0/1:106:62,44:62:2162:44:1551:-107.071,0,-162.938	0/1:98:59,39:59:2057:39:1375:-94.2601,0,-155.9	0/0:161:161,0:161:5618:0:0:0,-48.4658,-505.724	0/0:102:101,1:101:3578:1:36:0,-27.1068,-318.631	0/0:126:125,1:125:4336:1:36:0,-34.3315,-386.823	0/0:122:122,0:122:4325:0:0:0,-36.7257,-389.428	0/0:53:52,1:52:1791:1:36:0,-12.3563,-157.869	0/0:84:84,0:84:2908:0:0:0,-25.2865,-261.957	0/0:218:218,0:218:7712:0:0:0,-65.6245,-694.121	0/0:200:200,0:200:7049:0:0:0,-60.206,-634.448	0/1:139:45,94:45:1580:94:3337:-247.267,0,-100.645	0/0:78:77,1:77:2748:1:36:0,-19.8821,-243.964	0/0:149:148,1:148:5239:1:36:0,-41.2552,-468.053	0/0:154:154,0:154:5479:0:0:0,-46.3586,-493.209	0/1:403:204,199:204:7203:199:7099:-508.355,0,-526.65	0/0:457:457,0:457:16094:0:0:0,-137.571,-1448.17	0/0:54:54,0:54:1909:0:0:0,-16.2556,-172.086	0/1:474:207,267:207:7329:267:9442:-682.554,0,-516.125	0/0:189:180,9:180:6321:9:324:0,-27.4175,-539.492	0/0:122:121,0:121:4290:0:0:0,-36.4246,-385.921	0/1:27:16,11:16:572:11:392:-27.4697,0,-43.6833	0/0:35:35,0:35:1228:0:0:0,-10.536,-110.819	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:25:25,0:25:868:0:0:0,-7.52575,-78.4357	0/1:27:17,10:17:573:10:360:-24.4025,0,-43.7598	0/0:304:303,1:303:10688:1:36:0,-87.9148,-958.246	0/0:204:203,1:203:7142:1:36:0,-57.8118,-639.2	0/1:81:46,35:46:1623:35:1207:-84.4544,0,-121.975	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:189:96,93:96:3377:93:3310:-240.59,0,-247.252	0/1:66:43,23:43:1512:23:800:-51.9234,0,-116.505	0/0:239:239,0:239:8388:0:0:0,-71.9462,-754.922	0/0:114:114,0:114:4017:0:0:0,-34.3174,-361.715	0/0:102:101,1:101:3574:1:36:0,-27.1068,-318.272	0/1:187:75,111:75:2630:111:3921:-283.574,0,-180.595	0/0:174:174,0:174:6129:0:0:0,-52.3792,-551.719	0/0:192:192,0:192:6746:0:0:0,-57.7978,-607.185	0/0:193:191,2:191:6726:2:68:0,-51.6411,-598.937	0/1:220:120,100:120:4235:100:3524:-243.369,0,-315.07	0/0:281:281,0:281:9897:0:0:0,-84.5894,-890.688	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:155:104,51:104:3613:51:1804:-115.576,0,-278.719	0/0:87:87,0:87:3080:0:0:0,-26.1896,-277.428	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9319	0/1:176:116,60:116:4081:60:2135:-139.02,0,-314.428	0/1:62:35,27:35:1232:27:950:-65.6055,0,-92.5202	0/1:25:12,13:12:424:13:445:-31.725,0,-30.9707	0/0:17:17,0:17:599:0:0:0,-5.11751,-53.3778	0/0:137:137,0:137:4862:0:0:0,-41.2411,-437.57	0/1:235:106,129:106:3647:129:4583:-327.338,0,-257.61	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6397	0/0:261:260,1:260:9201:1:36:0,-74.9706,-824.445	0/0:221:218,3:218:7764:3:99:0,-57.322,-689.585	0/0:144:143,1:143:5020:1:36:0,-39.75,-448.285	0/0:203:201,1:201:7080:1:36:0,-57.5696,-633.637	0/0:227:227,0:227:8056:0:0:0,-68.3338,-725.064	0/1:224:83,141:83:2860:141:4983:-362.34,0,-190.209	0/0:110:110,0:110:3871:0:0:0,-33.1133,-347.569	0/0:122:122,0:122:4329:0:0:0,-36.7257,-389.788	0/1:150:53,97:53:1880:97:3456:-257.628,0,-124.324	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.383	0/0:227:227,0:227:7988:0:0:0,-68.3338,-718.528	0/0:120:120,0:120:4212:0:0:0,-36.1236,-379.264	0/0:140:139,1:139:4883:1:36:0,-38.5459,-436.029	0/0:203:203,0:203:7202:0:0:0,-61.1091,-648.237	0/1:127:65,62:65:2265:62:2189:-157.761,0,-165.851	0/1:162:79,83:79:2754:83:2964:-218.005,0,-199.265	0/1:27:17,10:17:612:10:360:-24.5879,0,-47.2856	0/0:181:181,0:181:6404:0:0:0,-54.4864,-576.409	0/0:192:192,0:192:6711:0:0:0,-57.7978,-604.077	0/0:223:220,3:220:7778:3:108:0,-57.0545,-689.927	0/0:112:112,0:112:3919:0:0:0,-33.7154,-352.906	0/1:109:40,69:40:1423:69:2440:-177.922,0,-95.5544	0/1:100:44,56:44:1556:56:1961:-144.18,0,-110.229	0/1:223:112,111:112:3969:111:3963:-283.202,0,-290.271	0/0:51:51,0:51:1789:0:0:0,-15.3525,-161.29	0/0:119:119,0:119:4208:0:0:0,-35.8226,-378.904	0/0:123:122,1:122:4286:1:36:0,-33.4284,-382.322	0/1:73:45,28:45:1565:28:973:-65.7685,0,-119.161	0/1:166:127,39:127:4438:39:1364:-72.7125,0,-349.59	0/1:125:30,95:30:1039:95:3337:-256.454,0,-56.1869	0/0:70:70,0:70:2471:0:0:0,-21.0721,-222.645	0/0:165:164,1:164:5707:1:36:0,-46.0717,-510.162
chr03	13749974	.	GGCA	GGCG,AGCG	395048	PASS	AB=0.532511,0.462716;ABP=49.1812,63.7308;AC=156,32;AF=0.829787,0.170213;AN=188;AO=12068,2348;CIGAR=3M1X,1X2M1X;DP=14490;DPB=14507.8;DPRA=0,1.12453;EPP=26191,5101.63;EPPR=13.8677;GTI=0;LEN=1,4;MEANALT=2.09574,2.70732;MQM=59.938,52.6346;MQMR=60;NS=94;NUMALT=2;ODDS=14.2775;PAIRED=0,0;PAIREDR=0;PAO=10.5,52.5;PQA=83.5,1731.5;PQR=0;PRO=8;QA=427178,81186;QR=168;RO=5;RPL=6181,737;RPP=18.5633,709.456;RPPR=3.44459;RPR=5887,1611;RUN=1,1;SAF=6179,737;SAP=18.143,709.456;SAR=5889,1611;SRF=3;SRP=3.44459;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:64:0,45,19:0:0:45,19:1608,651:-183.974,-52.8567,-39.3104,-131.13,0,-125.41	1/2:179:0,98,80:0:0:98,80:3452,2795:-508.084,-227.058,-197.557,-281.105,0,-257.023	1/2:216:0,156,59:0:0:156,59:5531,2043:-616.533,-165.917,-118.957,-450.646,0,-432.885	1/1:266:0,264,0:0:0:264,0:9337,0:-839.726,-79.4719,0,-839.726,-79.4719,-839.726	1/1:110:0,109,0:0:0:109,0:3873,0:-348.406,-32.8123,0,-348.406,-32.8123,-348.406	1/1:47:0,47,0:0:0:47,0:1684,0:-151.847,-14.1484,0,-151.847,-14.1484,-151.847	1/1:144:0,143,0:0:0:143,0:5042,0:-453.558,-43.0473,0,-453.558,-43.0473,-453.558	1/2:207:0,124,83:0:0:124,83:4392,2902:-593.812,-236.036,-198.708,-357.796,0,-332.81	1/1:172:0,171,0:0:0:171,0:6082,0:-547.123,-51.4761,0,-547.123,-51.4761,-547.123	1/1:166:0,166,0:0:0:166,0:5884,0:-529.359,-49.971,0,-529.359,-49.971,-529.359	1/1:156:0,156,0:0:0:156,0:5525,0:-497.367,-46.9607,0,-497.367,-46.9607,-497.367	1/2:107:0,65,41:0:0:65,41:2312,1382:-300.447,-112.016,-92.4492,-188.461,0,-176.119	1/2:101:0,63,37:0:0:63,37:2238,1262:-284.781,-102.407,-83.4421,-182.416,0,-171.277	1/1:175:0,174,0:0:0:174,0:6152,0:-553.556,-52.3792,0,-553.556,-52.3792,-553.556	1/1:113:0,113,0:0:0:113,0:3995,0:-359.741,-34.0164,0,-359.741,-34.0164,-359.741	1/1:128:0,128,0:0:0:128,0:4535,0:-408.317,-38.5318,0,-408.317,-38.5318,-408.317	1/1:139:1,137,0:1:30:137,0:4874,0:-435.845,-38.8125,0,-436.146,-41.2411,-438.544	1/1:59:0,58,1:0:0:58,1:2048,35:-184.229,-17.4597,0,-181.381,-14.2621,-181.08	1/1:101:0,101,0:0:0:101,0:3596,0:-323.848,-30.404,0,-323.848,-30.404,-323.848	1/1:236:0,236,0:0:0:236,0:8332,0:-749.894,-71.0431,0,-749.894,-71.0431,-749.894	1/1:213:0,213,0:0:0:213,0:7495,0:-674.597,-64.1194,0,-674.597,-64.1194,-674.597	1/2:145:0,47,96:0:0:47,96:1643,3314:-394.607,-260.945,-246.797,-133.769,0,-104.87	1/1:99:0,97,0:0:0:97,0:3425,0:-308.137,-29.1999,0,-308.137,-29.1999,-308.137	1/1:164:0,163,1:0:0:163,1:5759,36:-518.069,-49.0679,0,-515.132,-45.7706,-514.831	1/1:163:0,162,0:0:0:162,0:5749,0:-517.165,-48.7669,0,-517.165,-48.7669,-517.165	1/2:421:0,219,201:0:0:219,201:7765,6965:-1189.91,-557.665,-491.739,-632.172,0,-571.665	1/1:485:0,483,0:0:0:483,0:17163,0:-1544.07,-145.397,0,-1544.07,-145.397,-1544.07	1/1:59:0,59,0:0:0:59,0:2071,0:-186.658,-17.7608,0,-186.658,-17.7608,-186.658	1/2:497:0,228,268:0:0:228,268:8085,9300:-1391.25,-733.767,-665.132,-657.516,0,-576.84	1/1:220:1,209,9:1:30:209,9:7419,312:-664.702,-60.5204,0,-639.673,-37.543,-639.362	1/1:128:0,127,0:0:0:127,0:4515,0:-406.158,-38.2308,0,-406.158,-38.2308,-406.158	1/2:28:0,17,11:0:0:17,11:599,383:-80.249,-31.4917,-26.3742,-49.107,0,-45.7957	1/1:37:0,37,0:0:0:37,0:1296,0:-116.938,-11.1381,0,-116.938,-11.1381,-116.938	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6759,-8.42884,0,-90.6759,-8.42884,-90.6759	1/2:25:0,17,8:0:0:17,8:600,286:-72.281,-23.4107,-18.2931,-48.9562,0,-46.548	1/1:328:0,328,0:0:0:328,0:11586,0:-1042.63,-98.7378,0,-1042.63,-98.7378,-1042.63	1/1:214:0,212,1:0:0:212,1:7547,36:-678.962,-63.8184,0,-676.024,-60.806,-675.723	1/2:91:0,56,34:0:0:56,34:1979,1151:-254.532,-93.3485,-76.4908,-161.22,0,-150.985	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:198:0,105,92:0:0:105,92:3734,3171:-561.689,-257.385,-225.777,-304.321,0,-276.626	1/2:70:0,47,23:0:0:47,23:1660,784:-198.598,-63.427,-49.2786,-135.514,0,-128.59	1/1:252:0,250,0:0:0:250,0:8852,0:-796.419,-75.2575,0,-796.419,-75.2575,-796.419	1/1:121:0,121,0:0:0:121,0:4285,0:-385.822,-36.4246,0,-385.822,-36.4246,-385.822	1/1:109:0,107,0:0:0:107,0:3747,0:-337.112,-32.2102,0,-337.112,-32.2102,-337.112	1/2:193:0,81,110:0:0:81,110:2868,3820:-532.777,-299.15,-274.766,-233.669,0,-200.555	1/1:190:0,189,0:0:0:189,0:6716,0:-604.16,-56.8947,0,-604.16,-56.8947,-604.16	1/1:217:0,217,0:0:0:217,0:7623,0:-686.08,-65.3235,0,-686.08,-65.3235,-686.08	1/1:203:0,195,2:0:0:195,2:6938,58:-624.194,-58.7009,0,-619.577,-54.0839,-618.975	1/2:238:0,133,103:0:0:133,103:4751,3542:-668.548,-281.191,-241.154,-387.359,0,-356.353	1/1:310:0,309,0:0:0:309,0:10907,0:-981.256,-93.0183,0,-981.256,-93.0183,-981.256	1/1:14:0,14,0:0:0:14,0:491,0:-44.5211,-4.21442,0,-44.5211,-4.21442,-44.5211	1/2:164:0,117,47:0:0:117,47:4159,1649:-473.107,-134.183,-98.9621,-338.951,0,-324.802	1/1:97:0,97,0:0:0:97,0:3462,0:-311.792,-29.1999,0,-311.792,-29.1999,-311.792	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/2:187:0,128,59:0:0:128,59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chr03	13752249	.	T	A	26503.3	PASS	AB=0.527514;ABP=22.3677;AC=33;AF=0.175532;AN=188;AO=1577;CIGAR=1X;DP=7957;DPB=7957;DPRA=1.30509;EPP=3418.74;EPPR=13844;GTI=2;LEN=1;MEANALT=1;MQM=59.9943;MQMR=59.9992;NS=94;NUMALT=1;ODDS=1.33114;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56181;QR=227525;RO=6378;RPL=1577;RPP=3427.42;RPPR=13844;RPR=0;RUN=1;SAF=1576;SAP=3418.74;SAR=1;SRF=6376;SRP=13835.3;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:21,11:21:752:11:384:-25.2617,0,-58.3733	0/1:152:63,89:63:2244:89:3168:-239.589,0,-156.467	0/1:106:49,57:49:1748:57:2036:-151.603,0,-125.695	0/0:152:152,0:152:5405:0:0:0,-45.7566,-486.583	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/1:123:58,65:58:2060:65:2324:-172.394,0,-148.645	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.965	0/0:116:116,0:116:4142:0:0:0,-34.9195,-372.961	0/0:82:82,0:82:2909:0:0:0,-24.6845,-262.045	0/1:71:33,38:33:1180:38:1360:-101.327,0,-85.1349	0/1:59:33,26:33:1184:26:928:-66.0775,0,-89.1075	0/0:94:94,0:94:3355:0:0:0,-28.2968,-302.167	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.945	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:144:144,0:144:5137:0:0:0,-43.3483,-462.472	0/0:104:104,0:104:3711:0:0:0,-31.3071,-334.192	0/1:61:16,45:16:572:45:1592:-125.207,0,-33.4506	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:324:156,168:156:5540:168:6010:-443.47,0,-401.191	0/0:116:116,0:116:4139:0:0:0,-34.9195,-372.694	0/0:29:29,0:29:1022:0:0:0,-8.72987,-92.2909	0/1:165:88,77:88:3151:77:2723:-195.642,0,-234.145	0/0:205:191,14:191:6806:14:489:0,-17.3723,-568.276	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:215:215,0:215:7689:0:0:0,-64.7214,-692.043	0/0:173:172,1:172:6109:1:36:0,-48.4799,-546.314	0/1:76:37,39:37:1324:39:1392:-102.701,0,-96.5838	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:138:81,57:81:2895:57:2008:-139.447,0,-219.244	0/1:35:17,18:17:608:18:635:-46.9409,0,-44.516	0/0:95:94,0:94:3334:0:0:0,-28.2968,-299.919	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:64:64,0:64:2268:0:0:0,-19.2659,-204.381	0/1:58:35,23:35:1260:23:820:-56.6628,0,-96.2457	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:128:127,1:127:4543:1:36:0,-34.9336,-405.438	0/0:130:130,0:130:4637:0:0:0,-39.1339,-417.493	0/1:164:94,70:94:3335:70:2496:-175.524,0,-250.998	0/0:157:157,0:157:5561:0:0:0,-47.2617,-500.614	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:108:50,58:50:1800:58:2080:-154.959,0,-129.771	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:103:32,71:32:1148:71:2519:-195.956,0,-72.6237	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.103	0/1:148:76,72:76:2709:72:2572:-187.178,0,-199.5	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:259:259,0:259:9180:0:0:0,-77.9668,-826.177	0/0:274:274,0:274:9761:0:0:0,-82.4822,-878.437	0/0:109:103,6:103:3683:6:212:0,-13.3875,-312.248	0/0:45:45,0:45:1582:0:0:0,-13.5463,-142.669	0/0:102:102,0:102:3646:0:0:0,-30.7051,-328.344	0/1:90:25,65:25:887:65:2328:-182.687,0,-53.0554	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:130:64,66:64:2272:66:2359:-173.434,0,-165.606	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.71	0/0:97:97,0:97:3425:0:0:0,-29.1999,-308.463	0/0:127:127,0:127:4510:0:0:0,-38.2308,-406.071	0/1:75:35,40:35:1252:40:1432:-106.6,0,-90.4078	0/1:128:51,77:51:1828:77:2744:-208.671,0,-126.269	0/1:20:7,13:7:252:13:464:-36.0769,0,-17.0084	0/0:70:70,0:70:2494:0:0:0,-21.0721,-224.712	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:72:72,0:72:2564:0:0:0,-21.6742,-231.008	0/0:134:134,0:134:4807:0:0:0,-40.338,-432.784	0/1:80:39,41:39:1400:41:1459:-107.523,0,-102.217	0/1:102:43,59:43:1520:59:2100:-158.565,0,-106.385	0/1:151:78,73:78:2808:73:2598:-188.612,0,-207.503	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.626	0/1:47:27,20:27:964:20:704:-49.5361,0,-72.9284	0/1:127:59,68:59:2103:68:2418:-179.645,0,-151.308	0/1:48:8,40:8:288:40:1431:-114.637,0,-11.818	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.751	0/0:93:92,0:92:3275:0:0:0,-27.6948,-294.611
chr03	15078520	.	G	C	7289.66	PASS	AB=0.453901;ABP=29.0372;AC=32;AF=0.172043;AN=186;AO=645;CIGAR=1X;DP=4539;DPB=4539;DPRA=0.938331;EPP=1403.61;EPPR=8458.72;GTI=2;LEN=1;MEANALT=1;MQM=33;MQMR=18.6112;NS=93;NUMALT=1;ODDS=1.03434;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23070;QR=138048;RO=3894;RPL=645;RPP=1403.61;RPPR=8458.72;RPR=0;RUN=1;SAF=645;SAP=1403.61;SAR=0;SRF=3894;SRP=8458.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:14,8:14:500:8:288:-15.6755,0,-13.0033	0/1:23:18,5:18:640:5:180:-6.18588,0,-22.1399	0/1:64:40,24:40:1436:24:851:-46.2711,0,-37.8572	0/0:94:94,0:94:3300:0:0:0,-28.2968,-160.154	0/0:54:54,0:54:1906:0:0:0,-16.2556,-87.0567	0/0:29:29,0:29:1017:0:0:0,-8.72987,-41.377	0/0:68:68,0:68:2425:0:0:0,-20.47,-115.306	0/1:46:36,10:36:1284:10:360:-14.3984,0,-38.0835	0/0:56:56,0:56:1978:0:0:0,-16.8577,-80.3609	0/0:56:56,0:56:1966:0:0:0,-16.8577,-98.6503	0/0:32:32,0:32:1148:0:0:0,-9.63296,-59.462	0/1:71:35,36:35:1251:36:1296:-76.2702,0,-31.3591	0/1:60:27,33:27:968:33:1184:-72.071,0,-22.2664	0/0:37:37,0:37:1301:0:0:0,-11.1381,-59.5158	0/0:45:45,0:45:1601:0:0:0,-13.5463,-78.1039	0/0:30:30,0:30:1064:0:0:0,-9.0309,-48.3235	0/0:16:16,0:16:576:0:0:0,-4.81648,-23.8369	0/0:25:25,0:25:900:0:0:0,-7.52575,-36.4	0/0:18:18,0:18:644:0:0:0,-5.41854,-27.5033	0/0:56:56,0:56:1982:0:0:0,-16.8577,-96.7256	0/0:79:78,1:78:2727:1:36:0,-20.5937,-122.786	0/1:25:16,9:16:572:9:324:-18.6128,0,-24.4782	0/0:58:58,0:58:2056:0:0:0,-17.4597,-100.246	0/0:31:31,0:31:1101:0:0:0,-9.33193,-48.0269	0/0:48:48,0:48:1700:0:0:0,-14.4494,-76.7116	0/1:114:69,45:69:2467:45:1612:-92.8135,0,-97.2318	0/0:127:127,0:127:4530:0:0:0,-38.2308,-200.695	0/0:20:20,0:20:716:0:0:0,-6.0206,-30.9224	0/1:76:53,23:53:1866:23:828:-42.458,0,-79.3962	0/0:76:75,1:75:2647:1:36:0,-19.6907,-117.021	0/0:56:56,0:56:1993:0:0:0,-16.8577,-99.1053	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.37353	0/0:13:13,0:13:468:0:0:0,-3.91339,-21.0577	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-5.53769	1/1:2:0,2:0:0:2:72:-5.80362,-0.60206,0	0/0:165:165,0:165:5866:0:0:0,-49.6699,-318.791	0/0:106:106,0:106:3705:0:0:0,-31.9092,-165.749	0/1:27:15,12:15:525:12:432:-25.0288,0,-13.389	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.49667	0/1:42:26,16:26:928:16:559:-31.7264,0,-27.9013	0/1:25:10,15:10:356:15:540:-33.6588,0,-7.53089	0/0:107:107,0:107:3758:0:0:0,-32.2102,-165.444	0/0:30:30,0:30:1072:0:0:0,-9.0309,-51.9789	0/0:37:37,0:37:1328:0:0:0,-11.1381,-63.9063	0/1:45:32,13:32:1144:13:468:-24.0306,0,-46.9509	0/0:96:96,0:96:3380:0:0:0,-28.8989,-138.887	0/0:89:89,0:89:3127:0:0:0,-26.7917,-153.863	0/0:48:48,0:48:1686:0:0:0,-14.4494,-80.2108	0/1:42:23,19:23:805:19:676:-41.659,0,-27.4317	0/0:69:69,0:69:2442:0:0:0,-20.7711,-134.848	0/0:5:5,0:5:165:0:0:0,-1.50515,-9.12913	0/1:67:43,24:43:1491:24:849:-43.1237,0,-42.422	0/0:20:20,0:20:712:0:0:0,-6.0206,-39.1514	0/0:8:8,0:8:269:0:0:0,-2.40824,-12.5403	0/1:41:22,19:22:777:19:680:-41.5669,0,-22.2472	0/1:21:11,10:11:392:10:360:-22.1035,0,-12.7263	0/1:4:1,3:1:36:3:108:-7.72123,0,-0.882465	0/0:9:9,0:9:324:0:0:0,-2.70927,-18.2937	0/0:47:47,0:47:1688:0:0:0,-14.1484,-77.0015	0/1:117:69,48:69:2459:48:1713:-99.8083,0,-88.914	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.55871	0/0:85:85,0:85:3021:0:0:0,-25.5875,-166.989	0/0:86:86,0:86:3073:0:0:0,-25.8886,-153.798	0/0:26:25,1:25:892:1:36:0,-5.64363,-38.3779	0/0:36:36,0:36:1296:0:0:0,-10.8371,-63.8655	0/0:60:60,0:60:2124:0:0:0,-18.0618,-104.638	0/1:63:27,36:27:953:36:1292:-82.4306,0,-24.783	0/0:19:19,0:19:676:0:0:0,-5.71957,-29.2109	0/0:30:30,0:30:1046:0:0:0,-9.0309,-42.871	0/1:43:23,20:23:824:20:720:-44.7517,0,-32.4351	0/0:26:26,0:26:936:0:0:0,-7.82678,-46.1867	0/0:135:135,0:135:4783:0:0:0,-40.639,-190.442	0/0:38:38,0:38:1356:0:0:0,-11.4391,-57.1688	0/0:65:65,0:65:2290:0:0:0,-19.5669,-101.994	0/0:57:57,0:57:1999:0:0:0,-17.1587,-98.6297	0/1:36:24,12:24:864:12:432:-21.8388,0,-22.2614	0/1:43:21,22:21:756:22:792:-47.841,0,-19.0437	0/1:4:2,2:2:68:2:72:-4.5995,0,-2.73666	0/0:30:30,0:30:1065:0:0:0,-9.0309,-46.8489	0/0:54:54,0:54:1917:0:0:0,-16.2556,-75.7129	0/0:112:112,0:112:3988:0:0:0,-33.7154,-199.558	0/0:65:65,0:65:2298:0:0:0,-19.5669,-116.025	0/1:49:16,33:16:576:33:1184:-78.2893,0,-15.1646	0/1:16:7,9:7:252:9:309:-20.2731,0,-7.89929	0/1:79:40,39:40:1413:39:1391:-84.689,0,-48.4618	0/0:25:25,0:25:896:0:0:0,-7.52575,-36.3026	0/0:54:54,0:54:1909:0:0:0,-16.2556,-77.6403	0/0:58:58,0:58:2084:0:0:0,-17.4597,-86.8886	0/1:36:10,26:10:356:26:936:-62.9087,0,-4.83464	0/1:67:24,43:24:840:43:1533:-99.5596,0,-20.6834	0/1:42:16,26:16:572:26:921:-56.0819,0,-15.8085	0/0:52:52,0:52:1860:0:0:0,-15.6536,-87.9194	0/0:47:47,0:47:1648:0:0:0,-14.1484,-83.6682
chr03	15078543	.	G	A	6293.06	PASS	AB=0.437683;ABP=49.0188;AC=32;AF=0.172043;AN=186;AO=602;CIGAR=1X;DP=4471;DPB=4471;DPRA=0.918092;EPP=1310.24;EPPR=8404.44;GTI=4;LEN=1;MEANALT=1;MQM=32.5498;MQMR=18.6025;NS=93;NUMALT=1;ODDS=0.494028;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20904;QR=136436;RO=3869;RPL=602;RPP=1310.24;RPPR=8404.44;RPR=0;RUN=1;SAF=602;SAP=1310.24;SAR=0;SRF=3869;SRP=8404.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:14,6:14:492:6:212:-10.6369,0,-13.5963	0/1:23:18,5:18:615:5:167:-5.69428,0,-22.0256	0/1:61:39,22:39:1383:22:780:-41.2125,0,-37.3842	0/0:93:93,0:93:3296:0:0:0,-27.9958,-158.489	0/0:53:53,0:53:1883:0:0:0,-15.9546,-85.6921	0/0:29:29,0:29:1012:0:0:0,-8.72987,-41.3612	0/0:67:67,0:67:2368:0:0:0,-20.169,-113.582	0/1:44:35,9:35:1229:9:320:-11.9151,0,-37.2154	0/0:54:54,0:54:1915:0:0:0,-16.2556,-77.7632	0/0:57:57,0:57:1991:0:0:0,-17.1587,-100.325	0/0:32:32,0:32:1148:0:0:0,-9.63296,-59.4579	0/1:67:34,33:34:1166:33:1132:-66.8139,0,-30.9884	0/1:59:27,32:27:932:32:1085:-66.5591,0,-22.3593	0/0:34:34,0:34:1182:0:0:0,-10.235,-54.5463	0/0:45:45,0:45:1574:0:0:0,-13.5463,-77.8879	0/0:30:30,0:30:1076:0:0:0,-9.0309,-48.3714	0/0:16:16,0:16:576:0:0:0,-4.81648,-23.8369	0/0:25:25,0:25:884:0:0:0,-7.52575,-36.382	0/0:17:17,0:17:599:0:0:0,-5.11751,-26.1196	0/0:56:56,0:56:1969:0:0:0,-16.8577,-96.7824	0/0:80:79,1:79:2793:1:36:0,-20.8948,-124.447	0/1:26:17,9:17:608:9:311:-17.6134,0,-25.6993	0/0:58:58,0:58:2057:0:0:0,-17.4597,-100.603	0/0:31:31,0:31:1074:0:0:0,-9.33193,-47.4361	0/0:47:47,0:47:1594:0:0:0,-14.1484,-73.9079	0/1:110:70,40:70:2468:40:1403:-78.7053,0,-99.868	0/0:129:129,0:129:4547:0:0:0,-38.8329,-203.742	0/0:21:21,0:21:710:0:0:0,-6.32163,-32.2388	0/1:72:49,23:49:1744:23:799:-42.2661,0,-73.0476	0/0:76:75,1:75:2640:1:36:0,-19.6907,-117.87	0/0:55:55,0:55:1963:0:0:0,-16.5566,-97.8982	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.37353	0/0:11:11,0:11:392:0:0:0,-3.31133,-17.9815	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-5.53769	1/1:2:0,2:0:0:2:63:-5.35364,-0.60206,0	0/0:166:166,0:166:5858:0:0:0,-49.971,-320.137	0/0:105:105,0:105:3679:0:0:0,-31.6081,-165.063	0/1:26:15,11:15:512:11:375:-21.8123,0,-13.3717	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.49667	0/1:43:28,15:28:999:15:519:-28.3414,0,-30.454	0/1:23:9,14:9:324:14:482:-31.2457,0,-6.61184	0/0:104:104,0:104:3703:0:0:0,-31.3071,-160.675	0/0:31:31,0:31:1100:0:0:0,-9.33193,-53.4891	0/0:36:36,0:36:1256:0:0:0,-10.8371,-61.362	0/1:43:32,11:32:1139:11:384:-17.9762,0,-47.5059	0/0:96:96,0:96:3398:0:0:0,-28.8989,-139.316	0/0:86:86,0:86:3022:0:0:0,-25.8886,-149.17	0/0:47:47,0:47:1667:0:0:0,-14.1484,-78.7583	0/1:39:22,17:22:773:17:599:-35.7893,0,-26.7019	0/0:71:71,0:71:2520:0:0:0,-21.3731,-139.466	0/0:4:4,0:4:144:0:0:0,-1.20412,-7.61579	0/1:65:42,23:42:1500:23:804:-41.0867,0,-41.9243	0/0:20:20,0:20:692:0:0:0,-6.0206,-38.8679	0/0:7:7,0:7:244:0:0:0,-2.10721,-11.2753	0/1:43:25,18:25:891:18:624:-37.3377,0,-26.1918	0/1:21:11,10:11:392:10:360:-22.1035,0,-12.7195	0/1:4:1,3:1:36:3:108:-7.72123,0,-0.882465	0/0:9:9,0:9:324:0:0:0,-2.70927,-18.2937	0/0:45:45,0:45:1591:0:0:0,-13.5463,-73.7126	0/1:110:70,40:70:2478:40:1416:-78.6893,0,-92.9092	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.55871	0/0:82:82,0:82:2875:0:0:0,-24.6845,-161.293	0/0:87:87,0:87:3098:0:0:0,-26.1896,-155.462	0/0:25:24,1:24:860:1:32:0,-5.36689,-37.0636	0/0:36:36,0:36:1284:0:0:0,-10.8371,-64.0161	0/0:62:62,0:62:2193:0:0:0,-18.6639,-108.143	0/1:61:27,34:27:968:34:1194:-76.1696,0,-25.6413	0/0:19:19,0:19:672:0:0:0,-5.71957,-29.2063	0/0:29:29,0:29:1023:0:0:0,-8.72987,-41.6424	0/1:42:24,18:24:836:18:614:-37.5647,0,-34.4225	0/0:24:24,0:24:847:0:0:0,-7.22472,-42.7397	0/0:136:136,0:136:4832:0:0:0,-40.9401,-191.93	0/0:37:37,0:37:1297:0:0:0,-11.1381,-55.2497	0/0:64:64,0:64:2269:0:0:0,-19.2659,-100.644	0/0:56:56,0:56:1986:0:0:0,-16.8577,-97.3838	0/1:34:22,12:22:763:12:411:-21.5871,0,-20.1269	0/1:43:21,22:21:729:22:775:-47.1314,0,-18.7092	0/1:4:2,2:2:63:2:68:-4.45184,0,-2.66301	0/0:32:32,0:32:1133:0:0:0,-9.63296,-49.8919	0/0:53:53,0:53:1892:0:0:0,-15.9546,-73.8247	0/0:114:114,0:114:4040:0:0:0,-34.3174,-203.273	0/0:63:63,0:63:2171:0:0:0,-18.9649,-112.234	0/1:50:17,33:17:612:33:1137:-75.7356,0,-16.3866	0/1:15:7,8:7:252:8:262:-17.0129,0,-8.20032	0/1:76:39,37:39:1363:37:1280:-77.0991,0,-47.3199	0/0:24:24,0:24:851:0:0:0,-7.22472,-34.9358	0/0:54:54,0:54:1897:0:0:0,-16.2556,-77.6094	0/0:55:55,0:55:1943:0:0:0,-16.5566,-80.8739	0/1:34:10,24:10:348:24:844:-57.096,0,-5.42763	0/1:66:24,42:24:814:42:1434:-94.2921,0,-20.8024	0/1:40:16,24:16:568:24:838:-50.7055,0,-16.3993	0/0:55:55,0:55:1933:0:0:0,-16.5566,-92.1846	0/0:48:48,0:48:1650:0:0:0,-14.4494,-85.0147
chr03	15548830	.	G	T	93323.3	PASS	AB=0.46855;ABP=19.1273;AC=156;AF=0.829787;AN=188;AO=3933;CIGAR=1X;DP=4941;DPB=4941;DPRA=0;EPP=5429.33;EPPR=2150.67;GTI=2;LEN=1;MEANALT=1.07447;MQM=53.9858;MQMR=59.9401;NS=94;NUMALT=1;ODDS=0.235042;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136840;QR=35722;RO=1001;RPL=3836;RPP=7721.66;RPPR=2082.16;RPR=97;RUN=1;SAF=302;SAP=6121.69;SAR=3631;SRF=987;SRP=2056.75;SRR=14;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:8,2:8:288:2:68:-3.44248,0,-23.2571	0/1:41:18,23:18:644:23:816:-61.3484,0,-45.9484	0/1:69:54,15:54:1940:15:521:-26.4001,0,-154.097	1/1:39:0,39:0:0:39:1342:-120.891,-11.7402,0	1/1:21:0,21:0:0:21:752:-67.8847,-6.32163,0	1/1:16:0,16:0:0:16:560:-50.5998,-4.81648,0	1/1:42:0,42:0:0:42:1450:-130.523,-12.6433,0	0/1:53:35,18:35:1247:18:621:-40.1057,0,-96.5795	1/1:45:0,45:0:0:45:1550:-137.951,-13.5464,0	1/1:19:0,19:0:0:19:660:-59.4434,-5.71957,0	1/1:137:0,137:0:0:137:4789:-429.678,-41.2411,0	0/1:60:28,32:28:1004:32:1143:-84.9825,0,-72.6141	0/1:63:38,25:38:1355:25:865:-59.0212,0,-103.285	1/1:39:0,39:0:0:39:1376:-123.993,-11.7402,0	1/1:26:0,26:0:0:26:928:-83.6924,-7.82678,0	1/1:47:0,47:0:0:47:1674:-150.683,-14.1484,0	1/1:35:0,35:0:0:35:1211:-109.11,-10.5361,0	1/1:36:0,35:0:0:35:1213:-109.014,-10.5361,0	1/1:98:0,97:0:0:97:3351:-300.804,-29.1999,0	1/1:59:0,59:0:0:59:2034:-183.057,-17.7608,0	1/1:65:0,65:0:0:65:2243:-201.541,-19.567,0	0/1:29:21,8:21:752:8:284:-17.1493,0,-59.2764	1/1:19:0,19:0:0:19:668:-59.7287,-5.71957,0	1/1:41:1,39:1:36:39:1380:-120.738,-8.8025,0	1/1:13:0,13:0:0:13:448:-40.6051,-3.91339,0	0/1:106:67,39:67:2397:39:1317:-86.8537,0,-184.076	1/1:42:0,42:0:0:42:1481:-133.327,-12.6433,0	1/1:18:0,18:0:0:18:632:-57.1389,-5.41854,0	0/1:136:81,55:81:2912:55:1960:-135.643,0,-221.374	0/1:21:2,19:2:72:19:660:-53.2046,0,-0.515092	1/1:28:0,28:0:0:28:984:-88.5853,-8.42884,0	1/1:51:0,51:0:0:51:1754:-157.918,-15.3525,0	1/1:105:1,104:1:36:104:3600:-319.924,-28.015,0	1/1:92:0,92:0:0:92:3159:-283.985,-27.6948,0	1/1:119:0,119:0:0:119:4146:-372.213,-35.8226,0	0/1:74:8,66:8:284:66:2267:-181.6,0,-3.62713	1/1:223:0,222:0:0:222:7818:-702.134,-66.8287,0	1/1:14:0,14:0:0:14:484:-43.836,-4.21442,0	0/1:95:19,76:19:684:76:2627:-207.796,0,-33.2925	1/1:67:0,67:0:0:67:2302:-206.13,-20.169,0	0/1:65:50,15:50:1760:15:520:-27.4309,0,-139.114	0/1:34:13,21:13:464:21:737:-56.3289,0,-31.8625	1/1:45:0,45:0:0:45:1556:-139.9,-13.5464,0	1/1:49:0,49:0:0:49:1702:-153.148,-14.7505,0	1/1:29:0,29:0:0:29:1007:-90.4242,-8.72987,0	0/1:39:29,10:29:1032:10:352:-20.2652,0,-81.4533	1/1:28:0,28:0:0:28:946:-85.2713,-8.42884,0	1/1:35:0,35:0:0:35:1190:-107.157,-10.5361,0	1/1:24:0,24:0:0:24:791:-71.3885,-7.22472,0	0/1:68:57,11:57:2036:11:377:-13.5782,0,-163.042	1/1:66:0,66:0:0:66:2316:-208.464,-19.868,0	1/1:78:0,77:0:0:77:2688:-240.325,-23.1793,0	0/1:45:31,14:31:1108:14:488:-30.6651,0,-86.4846	1/1:18:0,17:0:0:17:588:-52.7973,-5.11751,0	1/1:20:1,19:1:21:19:676:-58.9149,-3.92065,0	0/1:86:72,14:72:2588:14:500:-19.3904,0,-207.28	0/1:21:14,7:14:496:7:234:-14.8033,0,-38.6526	0/1:34:4,30:4:144:30:1076:-86.3186,0,-3.0786	1/1:98:0,98:0:0:98:3381:-304.009,-29.5009,0	1/1:24:0,24:0:0:24:856:-77.034,-7.22472,0	0/1:66:38,28:38:1368:28:992:-69.4278,0,-103.553	1/1:50:0,50:0:0:50:1705:-153.449,-15.0515,0	1/1:81:0,81:0:0:81:2900:-261.203,-24.3834,0	1/1:34:0,34:0:0:34:1177:-105.914,-10.235,0	0/1:17:4,13:4:140:13:440:-34.7132,0,-7.82644	1/1:23:0,23:0:0:23:789:-71.21,-6.92369,0	1/1:31:0,31:0:0:31:1068:-96.0793,-9.33193,0	0/1:70:62,8:62:2189:8:284:-4.63344,0,-176.202	1/1:118:0,118:0:0:118:4075:-365.824,-35.5215,0	1/1:24:0,24:0:0:24:852:-76.8968,-7.22472,0	0/1:56:16,40:16:563:40:1410:-110.255,0,-34.1346	1/1:69:0,69:0:0:69:2369:-212.798,-20.7711,0	1/1:14:0,14:0:0:14:482:-43.6576,-4.21442,0	1/1:20:0,20:0:0:20:685:-61.8117,-6.0206,0	1/1:58:0,58:0:0:58:2025:-182.214,-17.4597,0	1/1:24:0,24:0:0:24:856:-76.9252,-7.22472,0	0/1:29:18,11:18:648:11:373:-25.0651,0,-49.7312	0/1:36:28,8:28:1000:8:276:-14.2722,0,-79.4783	1/1:81:1,80:1:36:80:2715:-240.671,-20.7852,0	1/1:24:0,24:0:0:24:826:-74.5482,-7.22472,0	1/1:25:0,25:0:0:25:853:-76.8756,-7.52575,0	1/1:89:0,88:0:0:88:3036:-270.989,-26.4906,0	1/1:36:0,36:0:0:36:1259:-113.418,-10.8371,0	0/1:36:22,14:22:771:14:488:-33.336,0,-58.8732	0/1:58:25,33:25:900:33:1165:-87.2247,0,-63.8613	0/1:94:43,51:43:1520:51:1794:-132.559,0,-108.791	1/1:26:0,26:0:0:26:893:-80.4916,-7.82678,0	1/1:39:0,39:0:0:39:1380:-124.272,-11.7402,0	1/1:40:0,40:0:0:40:1404:-126.434,-12.0412,0	0/1:87:12,75:12:428:75:2609:-207.94,0,-12.6692	0/1:122:32,90:32:1148:90:3130:-244.45,0,-66.9042	0/1:56:48,8:48:1711:8:288:-9.3597,0,-137.417	1/1:19:0,19:0:0:19:672:-60.7197,-5.71957,0	1/1:70:0,70:0:0:70:2451:-220.307,-21.0721,0
chr03	15548857	.	GCA	CCG,CCA	117422	PASS	AB=0.413333,0.586061;ABP=110.657,109.157;AC=161,27;AF=0.856383,0.143617;AN=188;AO=4251,982;CIGAR=1X1M1X,1X2M;DP=5237;DPB=5239.67;DPRA=0,1.13296;EPP=8278.52,2135.4;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.40426,2.02857;MQM=53.609,59.0978;MQMR=60;NS=94;NUMALT=2;ODDS=0.623385;PAIRED=0,0;PAIREDR=0;PAO=4,4;PQA=86,86;PQR=0;PRO=0;QA=149987,34852;QR=36;RO=1;RPL=4138,0;RPP=8278.52,2135.4;RPPR=5.18177;RPR=113,982;RUN=1,1;SAF=0,0;SAP=9233.94,2135.4;SAR=4251,982;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:6:0,2,4:0:0:2,4:66,140:-17.0666,-11.7405,-11.1384,-5.66262,0,-4.4585	1/2:66:0,29,37:0:0:29,37:1034,1328:-192.777,-108.599,-99.8691,-84.5353,0,-73.3972	1/2:58:0,16,42:0:0:16,42:560,1500:-168.118,-122.605,-117.788,-45.8655,0,-33.2222	1/1:49:0,49,0:0:0:49,0:1737,0:-156.345,-14.7505,0,-156.345,-14.7505,-156.345	1/1:29:0,29,0:0:0:29,0:1023,0:-92.2512,-8.72987,0,-92.2512,-8.72987,-92.2512	1/1:16:0,16,0:0:0:16,0:567,0:-51.2983,-4.81648,0,-51.2983,-4.81648,-51.2983	1/1:46:0,46,0:0:0:46,0:1625,0:-146.182,-13.8474,0,-146.182,-13.8474,-146.182	1/2:38:0,21,17:0:0:21,17:754,604:-110.881,-49.5446,-43.223,-61.693,0,-56.5755	1/1:51:0,51,0:0:0:51,0:1806,0:-161.15,-15.3525,0,-161.15,-15.3525,-161.15	1/1:20:0,20,0:0:0:20,0:698,0:-62.8719,-6.0206,0,-62.8719,-6.0206,-62.8719	1/1:145:0,145,0:0:0:145,0:5100,0:-457.182,-43.6494,0,-457.182,-43.6494,-457.182	1/2:67:0,37,30:0:0:37,30:1322,1072:-195.248,-87.6939,-76.5558,-107.911,0,-98.8801	1/2:55:0,30,25:0:0:30,25:1043,888:-156.848,-72.667,-63.6361,-84.531,0,-77.0052	1/1:40:0,40,0:0:0:40,0:1382,0:-124.53,-12.0412,0,-124.53,-12.0412,-124.53	1/1:27:0,27,0:0:0:27,0:966,0:-87.1017,-8.12781,0,-87.1017,-8.12781,-87.1017	1/1:53:0,53,0:0:0:53,0:1874,0:-168.601,-15.9546,0,-168.601,-15.9546,-168.601	1/1:37:0,37,0:0:0:37,0:1318,0:-118.696,-11.1381,0,-118.696,-11.1381,-118.696	1/1:38:0,38,0:0:0:38,0:1358,0:-122.4,-11.4391,0,-122.4,-11.4391,-122.4	1/1:122:0,122,0:0:0:122,0:4327,0:-388.656,-36.7257,0,-388.656,-36.7257,-388.656	1/1:63:0,63,0:0:0:63,0:2233,0:-200.888,-18.9649,0,-200.888,-18.9649,-200.888	1/1:75:0,75,0:0:0:75,0:2668,0:-239.633,-22.5773,0,-239.633,-22.5773,-239.633	1/2:37:0,5,32:0:0:5,32:178,1144:-108.093,-93.6259,-92.1208,-14.8222,0,-5.18921	1/1:27:0,27,0:0:0:27,0:945,0:-84.0303,-8.12781,0,-84.0303,-8.12781,-84.0303	1/1:44:0,44,0:0:0:44,0:1568,0:-141.217,-13.2453,0,-141.217,-13.2453,-141.217	1/1:15:0,15,0:0:0:15,0:536,0:-48.5142,-4.51545,0,-48.5142,-4.51545,-48.5142	1/2:129:0,28,101:0:0:28,101:1004,3553:-370.818,-289.121,-280.693,-82.053,0,-51.649	1/1:51:0,51,0:0:0:51,0:1817,0:-163.425,-15.3525,0,-163.425,-15.3525,-163.425	1/1:21:0,21,0:0:0:21,0:745,0:-67.2854,-6.32163,0,-67.2854,-6.32163,-67.2854	1/2:110:0,35,75:0:0:35,75:1229,2654:-316.289,-216.37,-205.834,-100.271,0,-77.6935	1/1:22:0,22,0:0:0:22,0:772,0:-69.5836,-6.62266,0,-69.5836,-6.62266,-69.5836	1/1:31:0,31,0:0:0:31,0:1109,0:-99.8566,-9.33193,0,-99.8566,-9.33193,-99.8566	1/1:60:0,60,0:0:0:60,0:2113,0:-190.064,-18.0618,0,-190.064,-18.0618,-190.064	1/1:127:0,127,0:0:0:127,0:4422,0:-397.195,-38.2308,0,-397.195,-38.2308,-397.195	1/1:112:0,112,0:0:0:112,0:3918,0:-351.95,-33.7154,0,-351.95,-33.7154,-351.95	1/1:156:0,155,0:0:0:155,0:5439,0:-488.24,-46.6597,0,-488.24,-46.6597,-488.24	1/1:74:0,74,0:0:0:74,0:2623,0:-235.772,-22.2762,0,-235.772,-22.2762,-235.772	1/1:133:0,133,0:0:0:133,0:4653,0:-417.719,-40.037,0,-417.719,-40.037,-417.719	1/1:16:0,15,1:0:0:15,1:537,36:-48.2424,-4.51545,0,-45.3499,-1.26796,-45.0489	1/2:104:0,85,19:0:0:85,19:3012,684:-301.135,-56.1708,-30.5832,-245.323,0,-239.604	1/1:81:0,81,0:0:0:81,0:2859,0:-255.445,-24.3834,0,-255.445,-24.3834,-255.445	1/2:64:0,18,46:0:0:18,46:643,1648:-186.986,-134.716,-129.298,-52.6268,0,-38.7794	1/2:31:0,24,7:0:0:24,7:832,252:-88.4409,-20.9208,-13.6961,-67.8768,0,-65.7696	1/1:48:0,48,0:0:0:48,0:1702,0:-152.881,-14.4494,0,-152.881,-14.4494,-152.881	1/1:51:0,50,0:0:0:50,0:1777,0:-159.55,-15.0515,0,-159.55,-15.0515,-159.55	1/1:32:0,32,0:0:0:32,0:1131,0:-101.548,-9.63296,0,-101.548,-9.63296,-101.548	1/2:23:0,5,17:0:0:5,17:175,608:-63.9343,-49.7105,-48.2054,-14.34,0,-9.22253	1/1:32:0,32,0:0:0:32,0:1145,0:-102.834,-9.63296,0,-102.834,-9.63296,-102.834	1/1:35:0,35,0:0:0:35,0:1252,0:-112.761,-10.5361,0,-112.761,-10.5361,-112.761	1/1:31:0,31,0:0:0:31,0:1088,0:-98.0356,-9.33193,0,-98.0356,-9.33193,-98.0356	1/2:65:0,14,51:0:0:14,51:491,1824:-188.767,-149.038,-144.824,-40.0796,0,-24.7271	1/1:40:0,40,0:0:0:40,0:1404,0:-126.413,-12.0412,0,-126.413,-12.0412,-126.413	1/1:91:0,91,0:0:0:91,0:3225,0:-288.849,-27.3937,0,-288.849,-27.3937,-288.849	1/2:56:0,15,41:0:0:15,41:531,1468:-163.224,-120.017,-115.502,-43.5611,0,-31.2189	1/1:12:0,12,0:0:0:12,0:432,0:-39.1808,-3.61236,0,-39.1808,-3.61236,-39.1808	1/1:21:0,21,0:0:0:21,0:747,0:-67.3335,-6.32163,0,-67.3335,-6.32163,-67.3335	1/2:88:0,17,71:0:0:17,71:603,2483:-251.339,-202.277,-197.16,-49.4151,0,-28.042	1/2:18:0,7,11:0:0:7,11:236,392:-51.3166,-32.3087,-30.2015,-19.3513,0,-16.04	1/1:41:0,38,3:0:0:38,3:1363,108:-121.995,-1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chr03	15548954	.	CACT	AACC,CACC	162101	PASS	AB=0.498255,0.496511;ABP=3.08607,3.31337;AC=153,33;AF=0.822581,0.177419;AN=186;AO=6139,1429;CIGAR=1X2M1X,3M1X;DP=7604;DPB=7604.5;DPRA=82.6413,1.22109;EPP=12860.2,2994.16;EPPR=5.18177;GTI=2;LEN=4,1;MEANALT=1.72826,2.42857;MQM=59.9195,59.9902;MQMR=60;NS=93;NUMALT=2;ODDS=0.408356;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=72,0;PQR=0;PRO=0;QA=211755,50704;QR=36;RO=1;RPL=6082,1416;RPP=12843.2,2994.16;RPPR=5.18177;RPR=57,13;RUN=1,1;SAF=6137,1429;SAP=13316.3,3106.04;SAR=2,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,20,7:0:0:20,7:695,252:-77.4159,-20.9217,-14.9011,-56.8507,0,-54.7435	1/2:77:0,40,37:0:0:40,37:1341,1316:-216.198,-107.604,-95.5625,-108.94,0,-97.8021	1/2:84:0,48,35:0:0:48,35:1611,1256:-232.985,-102.508,-88.0582,-130.524,0,-119.988	1/1:202:0,201,0:0:0:201,0:6991,0:-628.964,-60.507,0,-628.964,-60.507,-628.964	1/1:41:0,41,0:0:0:41,0:1411,0:-127.283,-12.3422,0,-127.283,-12.3422,-127.283	1/1:23:0,23,0:0:0:23,0:793,0:-71.6865,-6.92369,0,-71.6865,-6.92369,-71.6865	1/1:105:0,104,0:0:0:104,0:3583,0:-322.354,-31.3071,0,-322.354,-31.3071,-322.354	1/2:108:0,57,50:0:0:57,50:1962,1752:-301.873,-142.546,-125.387,-159.315,0,-144.263	1/1:38:0,38,0:0:0:38,0:1314,0:-118.556,-11.4391,0,-118.556,-11.4391,-118.556	1/1:90:0,89,0:0:0:89,0:3073,0:-276.44,-26.7917,0,-276.44,-26.7917,-276.44	1/1:112:0,110,0:0:0:110,0:3738,0:-336.234,-33.1133,0,-336.234,-33.1133,-336.234	1/2:54:0,28,26:0:0:28,26:990,913:-155.29,-74.6572,-66.2284,-80.9851,0,-73.1583	1/2:63:0,34,28:0:0:34,28:1203,977:-177.5,-79.5098,-69.2748,-98.0387,0,-89.6099	1/1:90:0,90,0:0:0:90,0:3140,0:-282.829,-27.0927,0,-282.829,-27.0927,-282.829	1/1:46:0,46,0:0:0:46,0:1605,0:-144.737,-13.8474,0,-144.737,-13.8474,-144.737	1/1:32:0,32,0:0:0:32,0:1101,0:-99.3925,-9.63296,0,-99.3925,-9.63296,-99.3925	1/1:68:0,67,0:0:0:67,0:2326,0:-209.24,-20.169,0,-209.24,-20.169,-209.24	1/1:49:0,49,0:0:0:49,0:1726,0:-155.625,-14.7505,0,-155.625,-14.7505,-155.625	1/1:40:0,40,0:0:0:40,0:1365,0:-123.144,-12.0412,0,-123.144,-12.0412,-123.144	1/1:221:0,221,0:0:0:221,0:7602,0:-684.239,-66.5276,0,-684.239,-66.5276,-684.239	1/1:94:0,94,0:0:0:94,0:3243,0:-291.968,-28.2968,0,-291.968,-28.2968,-291.968	1/2:122:0,41,80:0:0:41,80:1423,2837:-346.798,-231.126,-218.784,-115.662,0,-91.5796	1/1:54:0,54,0:0:0:54,0:1890,0:-170.378,-16.2556,0,-170.378,-16.2556,-170.378	1/1:92:0,92,0:0:0:92,0:3191,0:-287.409,-27.6948,0,-287.409,-27.6948,-287.409	1/1:52:0,52,0:0:0:52,0:1774,0:-159.939,-15.6536,0,-159.939,-15.6536,-159.939	1/2:202:0,102,100:0:0:102,100:3507,3579:-577.005,-292.214,-261.509,-285.142,0,-255.039	1/1:55:0,54,0:0:0:54,0:1874,0:-168.579,-16.2556,0,-168.579,-16.2556,-168.579	1/1:34:0,34,0:0:0:34,0:1194,0:-107.763,-10.235,0,-107.763,-10.235,-107.763	1/2:189:0,102,85:0:0:102,85:3517,3022:-532.018,-246.327,-215.622,-285.745,0,-260.158	1/1:71:0,70,0:0:0:70,0:2395,0:-215.556,-21.0721,0,-215.556,-21.0721,-215.556	1/1:80:0,80,0:0:0:80,0:2778,0:-250.262,-24.0824,0,-250.262,-24.0824,-250.262	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:21:0,21,0:0:0:21,0:730,0:-66.0207,-6.32163,0,-66.0207,-6.32163,-66.0207	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:133,0:-12.2982,-1.20412,0,-12.2982,-1.20412,-12.2982	1/2:5:0,2,3:0:0:2,3:72,104:-14.6799,-8.79971,-8.19765,-6.23466,0,-5.33157	1/1:175:0,175,0:0:0:175,0:6144,0:-553.015,-52.6803,0,-553.015,-52.6803,-553.015	1/1:148:0,145,3:0:0:145,3:4974,104:-447.478,-43.6494,0,-439.025,-34.8496,-438.122	1/2:82:0,44,38:0:0:44,38:1537,1355:-235.832,-110.811,-97.5652,-125.374,0,-113.935	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:191:0,95,96:0:0:95,96:3274,3417:-544.781,-278.845,-250.248,-266.286,0,-237.387	1/2:29:0,14,14:0:0:14,14:473,478:-77.1082,-38.7711,-34.5567,-38.3188,0,-34.1044	1/1:112:0,111,0:0:0:111,0:3796,0:-341.528,-33.4143,0,-341.528,-33.4143,-341.528	1/1:83:0,83,0:0:0:83,0:2828,0:-254.672,-24.9855,0,-254.672,-24.9855,-254.672	1/1:59:0,59,0:0:0:59,0:2030,0:-182.969,-17.7608,0,-182.969,-17.7608,-182.969	1/2:89:0,50,39:0:0:50,39:1707,1383:-251.517,-113.028,-97.9764,-138.837,0,-127.097	1/1:83:0,83,0:0:0:83,0:2875,0:-258.989,-24.9855,0,-258.989,-24.9855,-258.989	1/1:114:0,112,0:0:0:112,0:3883,0:-349.282,-33.7154,0,-349.282,-33.7154,-349.282	1/1:94:0,94,0:0:0:94,0:3227,0:-290.646,-28.2968,0,-290.646,-28.2968,-290.646	1/2:157:0,75,82:0:0:75,82:2626,2923:-452.278,-238.621,-216.043,-214.01,0,-189.326	1/1:144:0,144,0:0:0:144,0:4969,0:-447.374,-43.3483,0,-447.374,-43.3483,-447.374	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:338:0,146,191:0:0:146,191:4930,6798:-953.693,-554.119,-510.168,-399.639,0,-342.143	1/1:12:0,12,0:0:0:12,0:418,0:-37.9525,-3.61236,0,-37.9525,-3.61236,-37.9525	1/1:8:0,8,0:0:0:8,0:276,0:-25.1749,-2.40824,0,-25.1749,-2.40824,-25.1749	1/2:128:0,59,66:0:0:59,66:2044,2364:-358.985,-192.864,-175.103,-166.185,0,-146.317	1/2:24:0,14,10:0:0:14,10:464,356:-66.8878,-29.3709,-25.1565,-37.8625,0,-34.8522	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.2972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chr03	15551648	.	G	A	100831	PASS	AB=0.498111;ABP=3.06772;AC=154;AF=0.827957;AN=186;AO=4652;CIGAR=1X;DP=5591;DPB=5591;DPRA=0;EPP=10104.7;EPPR=2037.68;GTI=1;LEN=1;MEANALT=1.02151;MQM=58.5929;MQMR=59.9776;NS=93;NUMALT=1;ODDS=1.30973;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165623;QR=33414;RO=937;RPL=0;RPP=10104.7;RPPR=2037.68;RPR=4652;RUN=1;SAF=4652;SAP=10104.7;SAR=0;SRF=937;SRP=2037.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:24,26:24:852:26:928:-68.7501,0,-61.9489	0/1:35:17,18:17:612:18:648:-48.0595,0,-44.8774	0/1:121:67,54:67:2377:54:1902:-134.993,0,-177.762	1/1:94:0,94:0:0:94:3345:-301.092,-28.2968,0	1/1:55:0,55:0:0:55:1945:-175.278,-16.5567,0	1/1:21:0,21:0:0:21:756:-68.3668,-6.32163,0	1/1:14:0,14:0:0:14:500:-45.3308,-4.21442,0	0/1:81:43,37:43:1529:37:1308:-93.4842,0,-113.459	1/1:111:0,111:0:0:111:3926:-353.225,-33.4143,0	1/1:26:0,26:0:0:26:936:-84.4615,-7.82678,0	1/1:35:0,35:0:0:35:1260:-113.641,-10.5361,0	0/1:79:30,49:30:1080:49:1749:-133.836,0,-73.7319	0/1:47:16,31:16:576:31:1116:-86.525,0,-38.0266	1/1:29:0,29:0:0:29:1044:-94.2298,-8.72987,0	1/1:48:0,48:0:0:48:1728:-155.647,-14.4494,0	1/1:37:0,37:0:0:37:1328:-119.817,-11.1381,0	1/1:17:0,17:0:0:17:612:-55.3742,-5.11751,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:23:0,23:0:0:23:828:-74.8015,-6.92369,0	1/1:102:0,101:0:0:101:3597:-323.207,-30.404,0	1/1:132:0,132:0:0:132:4689:-421.923,-39.736,0	0/1:120:71,49:71:2548:49:1744:-121.026,0,-193.446	1/1:93:0,93:0:0:93:3336:-299.77,-27.9958,0	1/1:28:0,28:0:0:28:1000:-90.2212,-8.42884,0	1/1:70:0,70:0:0:70:2477:-223.089,-21.0721,0	0/1:130:56,74:56:1985:74:2637:-198.145,0,-139.789	1/1:172:0,172:0:0:172:6149:-552.941,-51.7772,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:119:64,55:64:2281:55:1945:-138.856,0,-169.725	1/1:58:4,54:4:144:54:1913:-159.041,-4.14612,0	1/1:65:0,65:0:0:65:2316:-208.582,-19.567,0	0/1:6:1,5:1:36:5:180:-14.7318,0,-1.79209	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0011,-0.90309,0	0/1:7:4,3:4:140:3:104:-7.5956,0,-10.8374	1/1:183:0,183:0:0:183:6530:-587.359,-55.0885,0	1/1:121:0,121:0:0:121:4308:-387.538,-36.4246,0	0/1:34:16,18:16:572:18:648:-48.3776,0,-41.5784	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:58:35,23:35:1256:23:808:-55.5804,0,-95.8855	0/1:27:14,13:14:504:13:453:-32.9718,0,-37.5703	1/1:120:0,120:0:0:120:4281:-385.213,-36.1236,0	1/1:48:0,48:0:0:48:1705:-153.67,-14.4494,0	1/1:51:0,51:0:0:51:1828:-164.511,-15.3525,0	0/1:70:52,18:52:1852:18:644:-37.0928,0,-145.888	1/1:138:0,138:0:0:138:4902:-441.04,-41.5421,0	1/1:106:0,106:0:0:106:3772:-338.61,-31.9092,0	1/1:67:0,67:0:0:67:2388:-214.832,-20.169,0	0/1:66:41,25:41:1446:25:900:-61.4372,0,-110.564	1/1:25:0,25:0:0:25:865:-78.1339,-7.52575,0	.:.:.:.:.:.:.:.	0/1:72:21,51:21:741:51:1816:-141.997,0,-45.3374	1/1:28:0,28:0:0:28:1000:-90.2386,-8.42884,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:58:32,26:32:1140:26:917:-64.708,0,-85.4495	0/1:35:13,22:13:464:22:777:-59.704,0,-31.5615	0/1:5:3,2:3:108:2:72:-5.32966,0,-8.57002	1/1:12:0,12:0:0:12:432:-39.1556,-3.61236,0	1/1:77:1,76:1:36:76:2694:-238.989,-19.581,0	0/1:70:30,40:30:1076:40:1405:-105.615,0,-76.0808	1/1:1:0,1:0:0:1:36:-3.59783,-0.30103,0	1/1:78:0,78:0:0:78:2785:-250.561,-23.4803,0	1/1:156:2,154:2:72:154:5501:-488.007,-40.124,0	1/1:77:1,76:1:36:76:2724:-241.758,-19.581,0	1/1:63:0,63:0:0:63:2205:-198.644,-18.9649,0	1/1:105:0,105:0:0:105:3716:-334.129,-31.6082,0	0/1:109:71,38:71:2533:38:1349:-88.8357,0,-195.407	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:27:0,27:0:0:27:956:-86.2017,-8.12781,0	0/1:35:16,19:16:568:19:684:-51.3277,0,-40.9158	1/1:9:0,9:0:0:9:309:-28.1383,-2.70927,0	1/1:90:0,90:0:0:90:3213:-288.851,-27.0927,0	1/1:58:0,58:0:0:58:2053:-184.99,-17.4597,0	1/1:132:0,132:0:0:132:4710:-423.384,-39.736,0	1/1:63:0,63:0:0:63:2248:-202.347,-18.9649,0	0/1:73:17,56:17:612:56:2004:-158.571,0,-33.4382	0/1:44:25,19:25:896:19:676:-47.8752,0,-67.715	0/1:10:7,3:7:244:3:99:-6.22142,0,-19.2891	1/1:78:0,78:0:0:78:2775:-249.634,-23.4803,0	1/1:43:0,43:0:0:43:1498:-134.894,-12.9443,0	1/1:136:0,136:0:0:136:4852:-436.086,-40.9401,0	1/1:76:0,76:0:0:76:2712:-244.047,-22.8783,0	0/1:25:13,12:13:468:12:419:-30.4599,0,-34.9339	0/1:19:6,13:6:216:13:460:-35.5179,0,-14.0709	0/1:116:50,66:50:1792:66:2345:-176.272,0,-126.643	1/1:14:0,14:0:0:14:504:-45.2316,-4.21442,0	1/1:59:0,59:0:0:59:2100:-189.224,-17.7608,0	1/1:52:0,52:0:0:52:1830:-164.16,-15.6536,0	0/1:16:8,8:8:288:8:288:-21.4283,0,-21.4509	0/1:57:30,27:30:1042:27:972:-70.6346,0,-76.9253	0/1:59:36,23:36:1292:23:828:-56.084,0,-98.823	1/1:56:0,56:0:0:56:2004:-180.434,-16.8577,0	1/1:76:0,76:0:0:76:2705:-243.496,-22.8783,0
chr03	15551695	.	C	T	96479	PASS	AB=0.490379;ABP=4.47267;AC=154;AF=0.827957;AN=186;AO=4444;CIGAR=1X;DP=5379;DPB=5379;DPRA=0;EPP=9644.35;EPPR=2028.99;GTI=1;LEN=1;MEANALT=1.02151;MQM=58.5974;MQMR=59.97;NS=93;NUMALT=1;ODDS=0.0631449;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158433;QR=32883;RO=933;RPL=4444;RPP=9653.03;RPPR=2028.99;RPR=0;RUN=1;SAF=4443;SAP=9644.35;SAR=1;SRF=933;SRP=2028.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:25,25:25:869:25:896:-65.8722,0,-63.4721	0/1:32:16,16:16:576:16:568:-41.8189,0,-42.542	0/1:121:66,55:66:2310:55:1971:-141.204,0,-171.734	1/1:90:0,90:0:0:90:3215:-289.405,-27.0927,0	1/1:51:0,51:0:0:51:1801:-162.324,-15.3525,0	1/1:20:0,20:0:0:20:701:-63.4113,-6.0206,0	1/1:14:0,14:0:0:14:504:-45.6924,-4.21442,0	0/1:76:42,34:42:1504:34:1211:-86.3781,0,-112.776	1/1:99:0,99:0:0:99:3537:-318.297,-29.802,0	1/1:22:0,22:0:0:22:758:-68.4827,-6.62266,0	1/1:35:0,35:0:0:35:1247:-112.47,-10.5361,0	0/1:78:30,48:30:1058:48:1707:-130.36,0,-72.0492	0/1:46:16,30:16:534:30:1068:-82.5275,0,-34.5272	1/1:28:0,28:0:0:28:1008:-90.9914,-8.42884,0	1/1:49:0,49:0:0:49:1760:-157.974,-14.7505,0	1/1:35:0,35:0:0:35:1252:-112.98,-10.5361,0	1/1:16:0,16:0:0:16:572:-51.7741,-4.81648,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:24:0,24:0:0:24:856:-77.3397,-7.22472,0	1/1:102:0,102:0:0:102:3645:-327.804,-30.7051,0	1/1:133:0,133:0:0:133:4669:-419.766,-40.037,0	0/1:118:71,47:71:2522:47:1679:-115.779,0,-191.709	1/1:86:0,86:0:0:86:3067:-275.795,-25.8886,0	1/1:27:0,27:0:0:27:950:-85.7128,-8.12781,0	1/1:69:0,69:0:0:69:2455:-221.059,-20.7711,0	0/1:130:57,73:57:1999:73:2612:-195.905,0,-141.047	1/1:159:0,159:0:0:159:5666:-509.322,-47.8638,0	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	0/1:117:63,54:63:2186:54:1940:-139.227,0,-161.78	1/1:56:4,52:4:144:52:1853:-153.644,-3.54406,0	1/1:60:0,60:0:0:60:2144:-193.11,-18.0618,0	0/1:6:1,5:1:36:5:172:-14.0005,0,-1.79209	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0011,-0.90309,0	0/1:7:4,3:4:125:3:108:-7.96796,0,-9.45141	1/1:177:0,177:0:0:177:6299:-566.5,-53.2823,0	1/1:116:0,116:0:0:116:4107:-369.461,-34.9195,0	0/1:33:15,18:15:536:18:648:-48.6786,0,-38.6408	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:57:35,22:35:1256:22:788:-54.0861,0,-96.1866	0/1:25:13,12:13:450:12:432:-31.6954,0,-33.3028	1/1:115:0,115:0:0:115:4070:-366.168,-34.6185,0	1/1:45:0,45:0:0:45:1594:-143.686,-13.5464,0	1/1:49:0,49:0:0:49:1743:-156.89,-14.7505,0	0/1:70:52,18:52:1846:18:648:-37.4536,0,-145.347	1/1:132:0,132:0:0:132:4723:-424.928,-39.736,0	1/1:96:0,96:0:0:96:3419:-307.34,-28.8989,0	1/1:64:0,64:0:0:64:2296:-206.34,-19.2659,0	0/1:67:41,26:41:1464:26:928:-63.6535,0,-111.887	1/1:24:0,24:0:0:24:846:-76.4106,-7.22472,0	.:.:.:.:.:.:.:.	0/1:69:21,48:21:737:48:1716:-133.904,0,-45.8796	1/1:26:0,26:0:0:26:928:-83.7934,-7.82678,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:55:32,23:32:1148:23:820:-56.8837,0,-87.0732	0/1:34:12,22:12:432:22:788:-60.9866,0,-28.9862	0/1:5:3,2:3:108:2:72:-5.32966,0,-8.57002	1/1:10:0,10:0:0:10:360:-32.6795,-3.0103,0	1/1:68:0,68:0:0:68:2440:-219.761,-20.47,0	0/1:67:28,39:28:971:39:1373:-103.639,0,-67.5321	1/1:1:0,1:0:0:1:36:-3.59783,-0.30103,0	1/1:74:0,74:0:0:74:2648:-238.24,-22.2762,0	1/1:148:1,147:1:36:147:5246:-468.309,-40.9542,0	1/1:74:1,72:1:36:72:2573:-228.246,-18.6617,0	1/1:60:0,60:0:0:60:2140:-192.8,-18.0618,0	1/1:98:0,98:0:0:98:3503:-314.935,-29.5009,0	0/1:110:73,37:73:2608:37:1319:-85.8379,0,-201.855	1/1:16:0,16:0:0:16:559:-50.6376,-4.81648,0	1/1:24:0,24:0:0:24:856:-77.2641,-7.22472,0	0/1:34:16,18:16:557:18:635:-47.2274,0,-40.2205	1/1:7:0,7:0:0:7:244:-22.2975,-2.10721,0	1/1:87:0,87:0:0:87:3101:-278.589,-26.1896,0	1/1:54:0,54:0:0:54:1927:-173.635,-16.2556,0	1/1:127:0,126:0:0:126:4516:-405.574,-37.9298,0	1/1:62:0,62:0:0:62:2220:-199.766,-18.6639,0	0/1:69:16,53:16:576:53:1908:-151.117,0,-31.4039	0/1:43:25,18:25:891:18:636:-44.5805,0,-67.5645	0/1:10:7,3:7:252:3:104:-6.67733,0,-20.0187	1/1:73:0,73:0:0:73:2616:-235.354,-21.9752,0	1/1:41:0,41:0:0:41:1451:-130.706,-12.3422,0	1/1:132:0,132:0:0:132:4732:-425.28,-39.736,0	1/1:73:0,73:0:0:73:2590:-233.093,-21.9752,0	0/1:24:13,11:13:443:11:392:-28.3348,0,-32.9708	0/1:19:6,13:6:216:13:464:-35.8798,0,-14.0709	0/1:114:52,62:52:1787:62:2216:-165.317,0,-126.783	1/1:14:0,14:0:0:14:486:-43.9441,-4.21442,0	1/1:56:0,56:0:0:56:2004:-180.577,-16.8577,0	1/1:51:0,51:0:0:51:1828:-164.271,-15.3525,0	0/1:16:8,8:8:288:8:279:-20.6084,0,-21.4509	0/1:57:30,27:30:1046:27:959:-69.4648,0,-77.2837	0/1:60:38,22:38:1336:22:780:-52.4027,0,-102.475	1/1:52:0,52:0:0:52:1860:-167.48,-15.6536,0	1/1:75:0,75:0:0:75:2692:-242.327,-22.5773,0
chr03	15897715	.	C	T	16499.5	PASS	AB=0.498483;ABP=3.04982;AC=30;AF=0.163043;AN=184;AO=993;CIGAR=1X;DP=5630;DPB=5630;DPRA=1.21597;EPP=2159.28;EPPR=10043.9;GTI=0;LEN=1;MEANALT=1;MQM=59.9738;MQMR=59.9965;NS=92;NUMALT=1;ODDS=1.32017;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35565;QR=165342;RO=4636;RPL=993;RPP=2159.28;RPPR=10052.6;RPR=0;RUN=1;SAF=0;SAP=2159.28;SAR=993;SRF=1;SRP=10061.3;SRR=4635;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:11,10:11:381:10:360:-26.4227,0,-28.299	0/1:83:39,44:39:1389:44:1580:-117.506,0,-100.321	0/1:45:19,26:19:656:26:906:-68.3046,0,-45.8131	0/0:97:97,0:97:3417:0:0:0,-29.1999,-307.739	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/0:92:92,0:92:3282:0:0:0,-27.6948,-295.597	0/1:80:46,34:46:1641:34:1209:-85.0317,0,-123.894	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:83:83,0:83:2967:0:0:0,-24.9855,-267.263	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:53:25,28:25:900:28:1008:-75.0818,0,-65.3664	0/1:53:22,31:22:792:31:1116:-84.7971,0,-55.6511	0/0:62:62,0:62:2198:0:0:0,-18.6639,-198.082	0/0:56:56,0:56:1986:0:0:0,-16.8577,-179.011	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:90:90,0:90:3160:0:0:0,-27.0927,-284.622	0/0:124:124,0:124:4422:0:0:0,-37.3277,-398.15	0/1:62:23,39:23:828:39:1404:-107.995,0,-56.1803	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.887	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:195:108,87:108:3864:87:3109:-221.335,0,-289.252	0/0:76:76,0:76:2690:0:0:0,-22.8783,-242.343	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:151:83,68:83:2965:68:2433:-173.768,0,-221.626	0/0:101:99,2:99:3556:2:72:0,-23.5673,-313.41	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	.:.:.:.:.:.:.:.	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:194:194,0:194:6946:0:0:0,-58.3998,-625.202	0/0:135:135,0:135:4791:0:0:0,-40.639,-431.345	0/1:46:23,23:23:824:23:828:-60.9967,0,-60.6359	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:66:31,35:31:1116:35:1260:-93.8375,0,-80.8755	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/0:81:81,0:81:2833:0:0:0,-24.3834,-255.203	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/1:58:30,28:30:1061:28:985:-71.5012,0,-78.3396	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.847	0/0:119:118,0:118:4169:0:0:0,-35.5215,-375.031	0/0:86:86,0:86:3062:0:0:0,-25.8886,-275.806	0/1:70:32,38:32:1152:38:1368:-102.349,0,-82.918	0/0:93:93,0:93:3333:0:0:0,-27.9958,-300.185	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:53:27,26:27:972:26:936:-68.6049,0,-71.8433	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:66:29,37:29:1025:37:1324:-99.5941,0,-72.6927	0/1:44:20,24:20:716:24:860:-64.4765,0,-51.5224	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:94:44,50:44:1550:50:1800:-133.985,0,-111.491	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:131:131,0:131:4676:0:0:0,-39.4349,-421	0/0:112:111,1:111:3973:1:36:0,-30.1171,-354.161	0/0:61:59,2:59:2109:2:72:0,-11.5261,-183.24	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/0:91:89,2:89:3173:2:72:0,-20.557,-278.957	0/1:72:21,51:21:748:51:1822:-142.587,0,-45.9711	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:60:39,21:39:1404:21:756:-50.3054,0,-108.597	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.246	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/1:66:25,41:25:896:41:1476:-113.268,0,-61.0924	0/1:79:45,34:45:1578:34:1222:-86.5057,0,-118.525	.:.:.:.:.:.:.:.	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.738	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:86:86,0:86:3043:0:0:0,-25.8886,-274.097	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/1:39:21,18:21:756:18:648:-46.9117,0,-56.6271	0/1:104:62,42:62:2217:42:1482:-102.363,0,-168.486	0/1:141:80,61:80:2857:61:2196:-155.46,0,-214.921	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/1:76:38,38:38:1353:38:1353:-98.8194,0,-99.1901	0/1:43:19,24:19:665:24:864:-65.1383,0,-47.2285	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.337	0/0:80:80,0:80:2846:0:0:0,-24.0824,-256.375
chr03	15897846	.	AGAAC	TGAAT,TGAAC	244739	PASS	AB=0.566765,0.424405;ABP=147.698,188.504;AC=156,32;AF=0.829787,0.170213;AN=188;AO=9806,1602;CIGAR=1X3M1X,1X4M;DP=11494;DPB=11496;DPRA=0,1.02516;EPP=21279.1,3481.71;EPPR=5.18177;GTI=0;LEN=5,1;MEANALT=2.2234,2.95;MQM=59.9119,60;MQMR=60;NS=94;NUMALT=2;ODDS=2.43431;PAIRED=0,0;PAIREDR=0;PAO=5,5;PQA=160.5,160.5;PQR=0;PRO=0;QA=341243,57206;QR=36;RO=1;RPL=9786,1599;RPP=21123.1,3455.7;RPPR=5.18177;RPR=20,3;RUN=1,1;SAF=9788,1599;SAP=21140.4,3455.7;SAR=18,3;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:50:0,34,16:0:0:34,16:1166,572:-141.65,-46.9969,-36.7619,-95.0062,0,-90.1897	1/2:169:0,117,52:0:0:117,52:4027,1863:-479.325,-152.295,-117.075,-327.384,0,-311.73	1/2:245:0,130,114:0:0:130,114:4489,4083:-697.673,-333.077,-293.943,-364.687,0,-330.369	1/1:364:0,361,0:0:0:361,0:12602,0:-1133.55,-108.672,0,-1133.55,-108.672,-1133.55	1/1:64:0,63,0:0:0:63,0:2201,0:-197.986,-18.9649,0,-197.986,-18.9649,-197.986	1/1:53:0,52,1:0:0:52,1:1809,36:-162.727,-15.6536,0,-159.79,-12.3563,-159.489	1/1:57:0,57,0:0:0:57,0:2005,0:-180.723,-17.1587,0,-180.723,-17.1587,-180.723	1/2:166:0,97,68:0:0:97,68:3358,2427:-470.744,-197.856,-168.656,-272.881,0,-252.411	1/1:109:0,108,0:0:0:108,0:3760,0:-338.294,-32.5112,0,-338.294,-32.5112,-338.294	1/1:136:0,136,0:0:0:136,0:4769,0:-429.374,-40.9401,0,-429.374,-40.9401,-429.374	1/1:52:0,51,0:0:0:51,0:1775,0:-159.711,-15.3525,0,-159.711,-15.3525,-159.711	1/2:74:0,41,32:0:0:41,32:1423,1127:-207.455,-91.7824,-79.4402,-115.701,0,-106.068	1/2:60:0,28,32:0:0:28,32:962,1121:-169.676,-91.5632,-83.1343,-78.4599,0,-68.8269	1/1:42:0,42,0:0:0:42,0:1458,0:-131.514,-12.6433,0,-131.514,-12.6433,-131.514	1/1:54:1,50,0:1:36:50,0:1707,0:-150.331,-12.1083,0,-150.632,-15.0515,-153.569	1/1:73:0,73,0:0:0:73,0:2531,0:-228.044,-21.9752,0,-228.044,-21.9752,-228.044	1/1:67:0,66,0:0:0:66,0:2278,0:-204.921,-19.868,0,-204.921,-19.868,-204.921	1/1:57:0,57,0:0:0:57,0:1979,0:-178.383,-17.1587,0,-178.383,-17.1587,-178.383	1/1:44:0,44,0:0:0:44,0:1514,0:-136.55,-13.2453,0,-136.55,-13.2453,-136.55	1/1:365:0,360,0:0:0:360,0:12608,0:-1134.2,-108.371,0,-1134.2,-108.371,-1134.2	1/1:228:0,228,0:0:0:228,0:7936,0:-714.255,-68.6348,0,-714.255,-68.6348,-714.255	1/2:155:0,82,70:0:0:82,70:2808,2484:-430.299,-202.38,-177.696,-227.909,0,-206.836	1/1:117:0,117,0:0:0:117,0:4054,0:-365.049,-35.2205,0,-365.049,-35.2205,-365.049	1/1:169:0,169,0:0:0:169,0:5860,0:-527.526,-50.8741,0,-527.526,-50.8741,-527.526	1/1:139:0,139,0:0:0:139,0:4818,0:-433.787,-41.8432,0,-433.787,-41.8432,-433.787	1/2:346:0,215,123:0:0:215,123:7474,4399:-966.385,-358.734,-294.012,-607.683,0,-570.656	1/1:249:0,247,0:0:0:247,0:8598,0:-773.512,-74.3544,0,-773.512,-74.3544,-773.512	1/1:30:0,30,0:0:0:30,0:1051,0:-94.8995,-9.0309,0,-94.8995,-9.0309,-94.8995	1/2:313:0,171,141:0:0:171,141:5995,5042:-898.956,-411.118,-359.642,-487.832,0,-445.387	1/1:202:0,192,9:0:0:192,9:6667,324:-599.762,-57.7978,0,-573.324,-31.3071,-570.615	1/1:154:0,152,0:0:0:152,0:5261,0:-473.278,-45.7566,0,-473.278,-45.7566,-473.278	1/2:12:0,7,5:0:0:7,5:251,180:-35.5183,-15.0469,-12.9397,-20.8306,0,-19.3255	1/1:25:0,24,0:0:0:24,0:831,0:-74.7946,-7.22472,0,-74.7946,-7.22472,-74.7946	1/1:7:0,7,0:0:0:7,0:247,0:-22.5729,-2.10721,0,-22.5729,-2.10721,-22.5729	1/1:9:0,9,0:0:0:9,0:289,0:-26.3224,-2.70927,0,-26.3224,-2.70927,-26.3224	1/2:22:0,15,7:0:0:15,7:530,252:-64.0808,-20.9217,-16.4063,-43.5168,0,-41.4096	1/1:192:0,192,0:0:0:192,0:6688,0:-602.016,-57.7978,0,-602.016,-57.7978,-602.016	1/1:228:0,225,0:0:0:225,0:7821,0:-703.651,-67.7318,0,-703.651,-67.7318,-703.651	1/2:69:0,37,31:0:0:37,31:1260,1103:-192.216,-90.0044,-78.8663,-102.316,0,-92.9837	1/1:6:0,6,0:0:0:6,0:209,0:-19.1504,-1.80618,0,-19.1504,-1.80618,-19.1504	1/2:202:0,125,76:0:0:125,76:4368,2696:-575.081,-219.763,-182.135,-355.429,0,-332.551	1/2:42:0,23,19:0:0:23,19:808,684:-121.93,-56.1708,-49.2471,-66.1153,0,-60.3958	1/1:204:0,204,0:0:0:204,0:7110,0:-639.975,-61.4101,0,-639.975,-61.4101,-639.975	1/1:74:0,72,1:0:0:72,1:2524,36:-226.983,-21.6742,0,-224.045,-18.7367,-223.744	1/1:56:0,56,0:0:0:56,0:1955,0:-176.224,-16.8577,0,-176.224,-16.8577,-176.224	1/2:137:0,74,60:0:0:74,60:2572,2147:-384.167,-175.078,-152.802,-209.086,0,-191.024	1/1:191:0,191,0:0:0:191,0:6651,0:-598.598,-57.4967,0,-598.598,-57.4967,-598.598	1/1:202:0,200,0:0:0:200,0:6997,0:-629.233,-60.206,0,-629.233,-60.206,-629.233	1/1:185:0,184,0:0:0:184,0:6410,0:-576.73,-55.3895,0,-576.73,-55.3895,-576.73	1/2:162:0,90,69:0:0:90,69:3122,2452:-453.65,-199.882,-172.789,-253.839,0,-233.068	1/1:205:0,204,0:0:0:204,0:7205,0:-648.311,-61.4101,0,-648.311,-61.4101,-648.311	1/1:12:0,12,0:0:0:12,0:409,0:-37.1359,-3.61236,0,-37.1359,-3.61236,-37.1359	1/2:235:0,141,90:0:0:141,90:4932,3218:-663.678,-262.435,-219.99,-401.283,0,-374.19	1/1:90:0,90,0:0:0:90,0:3100,0:-279.219,-27.0927,0,-279.219,-27.0927,-279.219	1/1:27:0,27,0:0:0:27,0:942,0:-85.0932,-8.12781,0,-85.0932,-8.12781,-85.0932	1/2:144:0,91,53:0:0:91,53:3147,1880:-409.235,-153.521,-126.128,-256.065,0,-240.11	1/2:75:0,40,35: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chr03	15897913	.	T	C	28090.2	PASS	AB=0.497739;ABP=3.1576;AC=32;AF=0.170213;AN=188;AO=1669;CIGAR=1X;DP=9249;DPB=9249;DPRA=1.21653;EPP=3575.27;EPPR=15969.2;GTI=0;LEN=1;MEANALT=1.025;MQM=59.9784;MQMR=59.9898;NS=94;NUMALT=1;ODDS=3.21279;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59640;QR=271883;RO=7579;RPL=1663;RPP=3575.27;RPPR=15969.2;RPR=6;RUN=1;SAF=0;SAP=3627.2;SAR=1669;SRF=0;SRP=16460.6;SRR=7579;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:16,15:16:576:15:536:-39.2429,0,-42.8431	0/1:122:80,42:80:2872:42:1500:-98.5689,0,-221.991	0/1:185:78,107:78:2792:107:3810:-287.406,0,-195.83	0/0:198:198,0:198:7085:0:0:0,-59.6039,-637.706	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/0:148:148,0:148:5316:0:0:0,-44.5524,-478.572	0/1:117:60,57:60:2156:57:2035:-148.201,0,-159.086	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/1:88:57,31:57:2052:31:1083:-71.2747,0,-158.461	0/1:78:41,37:41:1476:37:1324:-95.9818,0,-109.656	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:66:65,1:65:2340:1:36:0,-16.2697,-207.261	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:205:205,0:205:7342:0:0:0,-61.7111,-660.822	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/1:133:40,93:40:1432:93:3331:-259.97,0,-89.1406	0/0:89:89,0:89:3189:0:0:0,-26.7917,-287.231	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.431	0/0:92:92,0:92:3274:0:0:0,-27.6948,-294.878	0/1:224:108,116:108:3876:116:4172:-308.23,0,-281.603	0/0:226:226,0:226:8117:0:0:0,-68.0328,-730.541	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:229:113,116:113:4064:116:4152:-304.927,0,-297.009	0/0:154:147,6:147:5276:6:216:0,-26.4985,-455.204	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:229:229,0:229:8228:0:0:0,-68.9359,-740.527	0/0:176:173,3:173:6166:3:104:0,-43.2785,-545.335	0/1:88:36,52:36:1292:52:1868:-141.909,0,-90.0931	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:118:67,51:67:2408:51:1819:-128.469,0,-181.455	0/1:61:39,22:39:1404:22:776:-51.7993,0,-108.296	0/0:153:153,0:153:5492:0:0:0,-46.0576,-494.405	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:89:89,0:89:3187:0:0:0,-26.7917,-287.053	0/1:183:125,58:125:4477:58:2084:-132.742,0,-348.009	0/0:115:115,0:115:4136:0:0:0,-34.6184,-372.422	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.628	0/1:144:70,74:70:2516:74:2645:-194.946,0,-183.343	0/0:158:158,0:158:5676:0:0:0,-47.5627,-510.957	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:181:87,94:87:3116:94:3359:-248.038,0,-226.18	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:139:70,69:70:2497:69:2447:-178.639,0,-182.511	0/1:74:28,46:28:1004:46:1643:-125.882,0,-68.3996	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:153:80,73:80:2876:73:2608:-188.911,0,-213.018	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:156:156,0:156:5592:0:0:0,-46.9607,-503.384	0/0:200:197,3:197:7072:3:104:0,-50.5032,-626.834	0/0:72:70,2:70:2516:2:72:0,-14.8374,-219.855	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:100:99,1:99:3552:1:21:0,-28.0031,-317.788	0/1:117:39,78:39:1396:78:2764:-213.782,0,-90.7186	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:90:53,37:53:1900:37:1328:-92.7295,0,-144.185	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:117:116,1:116:4160:1:36:0,-31.6222,-370.976	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:132:132,0:132:4721:0:0:0,-39.736,-425.043	0/0:182:181,1:181:6500:1:36:0,-51.1892,-581.483	0/1:88:47,41:47:1692:41:1457:-104.933,0,-126.076	0/1:65:29,36:29:1040:36:1287:-96.5648,0,-74.3474	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:126:126,0:126:4509:0:0:0,-37.9298,-405.972	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/0:213:213,0:213:7630:0:0:0,-64.1194,-686.732	0/0:120:120,0:120:4320:0:0:0,-36.1236,-388.974	0/1:60:21,39:21:756:39:1404:-108.597,0,-50.3054	0/1:92:55,37:55:1976:37:1328:-92.1275,0,-150.42	0/1:153:78,75:78:2796:75:2696:-196.826,0,-205.822	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:111:111,0:111:3992:0:0:0,-33.4143,-359.468	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:76:41,35:41:1457:35:1256:-90.467,0,-108.546	0/1:119:58,61:58:2088:61:2183:-160.914,0,-152.367	0/1:72:27,45:27:972:45:1616:-124.056,0,-66.1237	0/0:120:120,0:120:4289:0:0:0,-36.1236,-386.186	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08
chr03	15942328	.	A	T	39793.9	PASS	AB=0.540869;ABP=65.1321;AC=33;AF=0.175532;AN=188;AO=2335;CIGAR=1X;DP=11363;DPB=11363;DPRA=1.32097;EPP=5073.4;EPPR=19585.3;GTI=4;LEN=1;MEANALT=1.07317;MQM=59.9383;MQMR=60;NS=94;NUMALT=1;ODDS=0.489715;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83005;QR=319980;RO=9018;RPL=0;RPP=5073.4;RPPR=19576.7;RPR=2335;RUN=1;SAF=0;SAP=5073.4;SAR=2335;SRF=1;SRP=19576.7;SRR=9017;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:20,22:20:720:22:784:-58.2407,0,-52.4855	0/1:157:82,75:82:2895:75:2680:-194.184,0,-213.521	0/1:146:58,86:58:2076:86:3036:-229.745,0,-143.402	0/0:266:266,0:266:9435:0:0:0,-80.074,-849.115	0/0:140:140,0:140:4999:0:0:0,-42.1442,-450.058	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:169:169,0:169:6009:0:0:0,-50.8741,-540.918	0/1:234:124,110:124:4424:110:3909:-281.556,0,-327.892	0/0:139:139,0:139:4959:0:0:0,-41.8432,-446.461	0/0:121:121,0:121:4307:0:0:0,-36.4246,-387.809	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/1:69:38,31:38:1314:31:1078:-76.5551,0,-97.7842	0/1:54:21,33:21:735:33:1149:-87.4581,0,-50.2158	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:57:57,0:57:2001:0:0:0,-17.1587,-180.362	0/0:72:71,0:71:2514:0:0:0,-21.3731,-226.152	0/0:67:67,0:67:2377:0:0:0,-20.169,-214.187	0/0:40:40,0:40:1414:0:0:0,-12.0412,-127.556	0/0:223:223,0:223:7953:0:0:0,-67.1297,-715.793	0/0:155:155,0:155:5485:0:0:0,-46.6596,-493.778	0/1:263:98,165:98:3480:165:5861:-448.434,0,-234.24	0/0:172:172,0:172:6106:0:0:0,-51.7772,-549.646	0/0:121:120,1:120:4259:1:36:0,-32.8264,-379.891	0/0:77:77,0:77:2718:0:0:0,-23.1793,-244.862	0/1:404:161,243:161:5771:243:8621:-654.273,0,-397.887	0/0:279:279,0:279:9914:0:0:0,-83.9874,-892.205	0/0:30:30,0:30:1030:0:0:0,-9.0309,-93.0041	0/1:438:170,268:170:6032:268:9541:-726.8,0,-411.137	0/0:164:161,3:161:5707:3:104:0,-39.6661,-504.046	0/0:197:197,0:197:7007:0:0:0,-59.3029,-630.699	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:193:193,0:193:6834:0:0:0,-58.0988,-615.134	0/0:261:261,0:261:9278:0:0:0,-78.5688,-834.993	0/1:93:45,47:45:1599:47:1645:-120.21,0,-116.145	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:216:112,104:112:3941:104:3715:-269.524,0,-289.859	0/1:65:27,38:27:952:38:1330:-100.431,0,-66.4282	0/0:151:151,0:151:5402:0:0:0,-45.4555,-486.31	0/0:64:64,0:64:2271:0:0:0,-19.2659,-204.652	0/0:74:74,0:74:2629:0:0:0,-22.2762,-236.856	0/1:119:52,67:52:1857:67:2408:-181.149,0,-131.585	0/0:162:161,0:161:5695:0:0:0,-48.4658,-512.314	0/0:226:226,0:226:7996:0:0:0,-68.0328,-719.667	0/0:137:137,0:137:4830:0:0:0,-41.2411,-434.857	0/1:214:91,123:91:3220:123:4404:-332.112,0,-225.602	0/0:177:177,0:177:6310:0:0:0,-53.2823,-567.995	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/1:228:105,123:105:3731:123:4400:-327.538,0,-267.355	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/1:181:95,86:95:3338:86:3030:-218.444,0,-246.152	0/1:78:32,46:32:1139:46:1650:-125.305,0,-79.338	0/1:27:13,14:13:468:14:496:-36.8464,0,-34.3318	0/0:21:21,0:21:732:0:0:0,-6.32163,-66.1987	0/0:75:75,0:75:2678:0:0:0,-22.5772,-241.264	0/1:78:43,35:43:1540:35:1242:-88.6043,0,-115.413	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:304:304,0:304:10739:0:0:0,-91.5131,-966.427	0/0:320:313,7:313:11198:7:252:0,-73.3006,-984.678	0/1:120:108,12:108:3823:12:432:-3.0976,0,-308.144	0/0:141:141,0:141:4977:0:0:0,-42.4452,-448.082	0/0:228:226,0:226:8059:0:0:0,-68.0328,-724.99	0/1:97:29,68:29:1013:68:2433:-190.023,0,-62.2795	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:77:77,0:77:2737:0:0:0,-23.1793,-246.572	0/1:65:30,35:30:1063:35:1239:-92.2467,0,-76.4139	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:140:140,0:140:4936:0:0:0,-42.1442,-444.396	0/0:110:107,3:107:3752:3:108:0,-23.0381,-327.807	0/0:124:123,1:123:4381:1:36:0,-33.7294,-390.866	0/0:227:226,1:226:8071:1:36:0,-64.7355,-722.812	0/1:181:74,107:74:2619:107:3786:-286.183,0,-181.469	0/1:192:85,107:85:3048:107:3821:-286.286,0,-216.751	0/1:30:13,17:13:464:17:604:-45.6597,0,-33.0666	0/0:183:182,1:182:6412:1:36:0,-51.4953,-573.583	0/0:126:126,0:126:4444:0:0:0,-37.9298,-400.133	0/0:212:210,2:210:7463:2:72:0,-56.9816,-664.879	0/0:88:87,0:87:3065:0:0:0,-26.1896,-275.721	0/1:66:34,32:34:1196:32:1139:-82.9504,0,-88.0746	0/1:92:51,41:51:1797:41:1454:-103.431,0,-134.315	0/1:148:67,81:67:2380:81:2877:-214.614,0,-169.906	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/0:67:67,0:67:2364:0:0:0,-20.169,-213.017	0/0:72:72,0:72:2555:0:0:0,-21.6742,-230.201	0/1:14:9,5:9:324:5:171:-11.511,0,-25.2914	0/1:59:29,30:29:1036:30:1074:-79.212,0,-75.7931	0/1:75:25,48:25:888:48:1708:-131.671,0,-57.9044	0/0:121:121,0:121:4245:0:0:0,-36.4246,-382.229	0/0:98:98,0:98:3427:0:0:0,-29.5009,-308.645
chr03	15942337	.	T	C	40200.3	PASS	AB=0.538604;ABP=58.8397;AC=33;AF=0.175532;AN=188;AO=2346;CIGAR=1X;DP=11501;DPB=11501;DPRA=1.24855;EPP=5097.28;EPPR=19865.5;GTI=3;LEN=1;MEANALT=1;MQM=59.9587;MQMR=59.9991;NS=94;NUMALT=1;ODDS=0.893031;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83767;QR=327509;RO=9155;RPL=0;RPP=5097.28;RPPR=19856.8;RPR=2346;RUN=1;SAF=0;SAP=5097.28;SAR=2346;SRF=1;SRP=19874.2;SRR=9154;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:20,20:20:720:20:716:-52.7265,0,-53.0876	0/1:158:84,74:84:3024:74:2656:-191.723,0,-224.827	0/1:148:59,89:59:2112:89:3196:-243.297,0,-145.797	0/0:277:277,0:277:9924:0:0:0,-83.3853,-893.099	0/0:140:140,0:140:5024:0:0:0,-42.1442,-452.305	0/0:67:65,2:65:2340:2:72:0,-13.3323,-204.022	0/0:171:171,0:171:6090:0:0:0,-51.4761,-548.204	0/1:243:132,111:132:4724:111:3935:-281.192,0,-352.169	0/0:141:141,0:141:5046:0:0:0,-42.4452,-454.284	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.565	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:66:35,31:35:1256:31:1108:-80.1621,0,-93.4773	0/1:56:22,34:22:788:34:1224:-93.6094,0,-54.3871	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:72:71,1:71:2536:1:36:0,-18.0759,-224.893	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:223:223,0:223:8000:0:0:0,-67.1297,-720.019	0/0:154:154,0:154:5528:0:0:0,-46.3586,-497.643	0/1:265:99,166:99:3560:166:5956:-456.373,0,-240.834	0/0:171:171,0:171:6119:0:0:0,-51.4761,-550.81	0/0:126:125,1:125:4460:1:36:0,-34.3315,-397.97	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.954	0/1:410:164,246:164:5884:246:8793:-667.934,0,-406.246	0/0:283:283,0:283:10090:0:0:0,-85.1915,-908.036	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:438:169,269:169:6068:269:9610:-733.002,0,-414.369	0/0:169:166,3:166:5959:3:108:0,-40.7989,-526.339	0/0:196:196,0:196:7027:0:0:0,-59.0019,-632.49	0/1:24:12,12:12:413:12:432:-31.9965,0,-30.2731	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:14:9,5:9:320:5:176:-11.9706,0,-24.9279	0/0:194:194,0:194:6944:0:0:0,-58.3998,-625.026	0/0:267:267,0:267:9528:0:0:0,-80.375,-857.476	0/1:96:47,49:47:1650:49:1745:-128.434,0,-119.887	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:217:114,103:114:4080:103:3700:-267.871,0,-302.063	0/1:68:28,40:28:1008:40:1423:-107.897,0,-70.5663	0/0:153:153,0:153:5484:0:0:0,-46.0576,-493.686	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/1:117:52,65:52:1868:65:2306:-172.577,0,-133.179	0/0:164:164,0:164:5856:0:0:0,-49.3689,-527.151	0/0:234:234,0:234:8332:0:0:0,-70.441,-749.889	0/0:137:137,0:137:4907:0:0:0,-41.2411,-441.78	0/1:215:93,122:93:3311:122:4372:-328.932,0,-233.488	0/0:180:180,0:180:6460:0:0:0,-54.1854,-581.484	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:229:107,122:107:3812:122:4348:-322.558,0,-274.341	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:184:100,84:100:3549:84:3008:-215.56,0,-264.227	0/1:77:32,45:32:1152:45:1589:-120.117,0,-80.8108	0/1:27:13,14:13:468:14:500:-37.2084,0,-34.3318	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:80:79,1:79:2828:1:36:0,-20.4841,-251.161	0/1:81:43,38:43:1548:38:1366:-98.8574,0,-115.23	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:306:306,0:306:10947:0:0:0,-92.1152,-985.128	0/0:324:317,7:317:11350:7:252:0,-74.5048,-998.35	0/1:118:106,12:106:3796:12:423:-2.88353,0,-306.317	0/0:142:142,0:142:5033:0:0:0,-42.7463,-453.12	0/0:226:226,0:226:8095:0:0:0,-68.0328,-728.566	0/1:98:30,68:30:1068:68:2419:-188.465,0,-66.9311	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9546	0/0:77:77,0:77:2748:0:0:0,-23.1793,-247.563	0/1:64:29,35:29:1036:35:1260:-94.4396,0,-74.288	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:141:141,0:141:5042:0:0:0,-42.4452,-453.925	0/0:113:110,3:110:3940:3:108:0,-23.9412,-344.717	0/0:128:127,1:127:4547:1:36:0,-34.9336,-405.798	0/0:234:233,1:233:8320:1:36:0,-66.8427,-745.21	0/1:182:77,105:77:2764:105:3700:-278.357,0,-194.214	0/1:192:86,106:86:3050:106:3796:-284.04,0,-216.93	0/1:30:13,17:13:464:17:612:-46.3825,0,-33.0666	0/0:182:181,1:181:6478:1:36:0,-51.1943,-579.511	0/0:134:134,0:134:4774:0:0:0,-40.338,-429.818	0/0:213:211,2:211:7534:2:72:0,-57.2827,-671.263	0/0:87:87,0:87:3117:0:0:0,-26.1896,-280.755	0/1:66:34,32:34:1220:32:1139:-82.9504,0,-90.2388	0/1:93:52,41:52:1868:41:1454:-103.13,0,-140.403	0/1:147:66,81:66:2372:81:2875:-214.736,0,-169.486	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:59:29,30:29:1044:30:1068:-78.6713,0,-76.514	0/1:77:25,52:25:896:52:1854:-143.96,0,-57.781	0/0:123:123,0:123:4400:0:0:0,-37.0267,-396.173	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482
chr03	15942364	.	A	G	41215.3	PASS	AB=0.544909;ABP=78.8795;AC=33;AF=0.175532;AN=188;AO=2378;CIGAR=1X;DP=11399;DPB=11399;DPRA=1.4195;EPP=5158.09;EPPR=19479.1;GTI=4;LEN=1;MEANALT=1.02439;MQM=59.9487;MQMR=59.9997;NS=94;NUMALT=1;ODDS=1.07853;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85092;QR=322487;RO=9017;RPL=2377;RPP=5158.09;RPPR=19479.1;RPR=1;RUN=1;SAF=0;SAP=5166.77;SAR=2378;SRF=0;SRP=19583.2;SRR=9017;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:20,20:20:720:20:712:-52.3655,0,-53.0876	0/1:159:83,76:83:2976:76:2717:-196.909,0,-220.209	0/1:150:58,92:58:2080:92:3292:-251.32,0,-142.316	0/0:266:265,0:265:9447:0:0:0,-79.7729,-849.88	0/0:137:137,0:137:4905:0:0:0,-41.2411,-441.599	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:167:167,0:167:5984:0:0:0,-50.272,-538.665	0/1:244:131,113:131:4685:113:4052:-291.359,0,-348.358	0/0:139:139,0:139:4956:0:0:0,-41.8432,-446.189	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.013	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:68:37,31:37:1328:31:1102:-79.0193,0,-99.3522	0/1:55:21,34:21:740:34:1211:-92.7389,0,-50.3667	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.5	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.839	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.648	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:218:218,0:218:7828:0:0:0,-65.6245,-704.545	0/0:153:153,0:153:5464:0:0:0,-46.0576,-491.887	0/1:265:97,167:97:3423:167:5977:-458.353,0,-228.599	0/0:171:171,0:171:6105:0:0:0,-51.4761,-549.551	0/0:117:116,1:116:4164:1:36:0,-31.6222,-371.343	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:413:163,250:163:5852:250:8948:-680.971,0,-402.464	0/0:282:282,0:282:10058:0:0:0,-84.8905,-905.157	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:435:164,271:164:5896:271:9716:-743.439,0,-399.799	0/0:163:160,3:160:5714:3:108:0,-38.9927,-504.3	0/0:192:192,0:192:6812:0:0:0,-57.7978,-613.152	0/1:24:11,13:11:392:13:460:-34.5101,0,-28.3953	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:188:188,0:188:6744:0:0:0,-56.5936,-607.032	0/0:266:266,0:266:9520:0:0:0,-80.074,-856.755	0/1:93:45,48:45:1620:48:1724:-127.449,0,-118.094	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:217:113,104:113:4033:104:3727:-270.3,0,-297.834	0/1:68:29,39:29:1044:39:1397:-105.559,0,-73.8048	0/0:152:152,0:152:5431:0:0:0,-45.7566,-488.92	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:71:70,0:70:2512:0:0:0,-21.0721,-225.972	0/1:120:52,68:52:1868:68:2432:-183.007,0,-132.276	0/0:162:162,0:162:5808:0:0:0,-48.7669,-522.832	0/0:228:227,0:227:8041:0:0:0,-68.3338,-723.389	0/0:135:135,0:135:4833:0:0:0,-40.639,-435.123	0/1:216:91,125:91:3276:125:4477:-338.075,0,-230.036	0/0:179:179,0:179:6417:0:0:0,-53.8844,-577.615	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:230:105,125:105:3739:125:4469:-333.142,0,-267.475	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:185:100,85:100:3568:85:3060:-219.937,0,-265.636	0/1:79:32,47:32:1152:47:1684:-128.064,0,-80.2088	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:78:78,0:78:2777:0:0:0,-23.4803,-250.17	0/1:80:42,38:42:1508:38:1364:-98.9783,0,-111.932	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:303:302,1:302:10762:1:21:0,-89.1121,-966.386	0/0:321:314,7:314:11280:7:252:0,-73.6017,-992.048	0/1:118:106,12:106:3766:12:432:-3.69966,0,-303.617	0/0:143:143,0:143:5120:0:0:0,-43.0473,-460.942	0/0:227:227,0:227:8114:0:0:0,-68.3338,-730.274	0/1:97:28,69:28:1008:69:2457:-192.181,0,-61.8364	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/1:65:30,35:30:1072:35:1260:-94.1385,0,-77.2255	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:138:138,0:138:4924:0:0:0,-41.5421,-443.31	0/0:111:110,1:110:3927:1:36:0,-29.8161,-350.025	0/0:127:127,0:127:4544:0:0:0,-38.2308,-409.127	0/0:228:227,1:227:8121:1:27:0,-65.9351,-728.205	0/1:188:78,110:78:2785:110:3912:-295.649,0,-194.296	0/1:193:86,107:86:3080:107:3840:-287.697,0,-219.329	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	0/0:181:179,2:179:6421:2:72:0,-47.6546,-571.141	0/0:130:130,0:130:4645:0:0:0,-39.1339,-418.211	0/0:211:209,2:209:7466:2:72:0,-56.6806,-665.145	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/1:65:33,32:33:1184:32:1148:-84.0629,0,-87.3014	0/1:94:52,42:52:1868:42:1500:-106.969,0,-140.102	0/1:149:66,83:66:2364:83:2954:-221.24,0,-168.165	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:59:28,31:28:993:31:1112:-82.6306,0,-71.9217	0/1:77:25,52:25:885:52:1856:-144.14,0,-56.7872	0/0:124:124,0:124:4429:0:0:0,-37.3277,-398.781	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009
chr03	16960699	.	C	A	109774	PASS	AB=0.462252;ABP=32.3549;AC=157;AF=0.835106;AN=188;AO=5383;CIGAR=1X;DP=6665;DPB=6665;DPRA=0;EPP=11692;EPPR=2775.98;GTI=2;LEN=1;MEANALT=1.05319;MQM=39.9725;MQMR=56.4769;NS=94;NUMALT=1;ODDS=0.438559;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192860;QR=45650;RO=1277;RPL=5383;RPP=11692;RPPR=2775.98;RPR=0;RUN=1;SAF=0;SAP=11692;SAR=5383;SRF=0;SRP=2775.98;SRR=1277;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:18,4:18:625:4:144:-6.25591,0,-49.9011	0/1:78:39,39:39:1396:39:1377:-95.8681,0,-102.083	0/1:78:37,41:37:1328:41:1476:-104.448,0,-95.4916	1/1:129:0,129:0:0:129:4632:-395.977,-38.8329,0	1/1:55:0,55:0:0:55:1965:-168.486,-16.5567,0	1/1:31:0,31:0:0:31:1112:-97.1686,-9.33193,0	1/1:110:0,110:0:0:110:3948:-338.032,-33.1133,0	0/1:158:77,81:77:2764:81:2904:-203.683,0,-201.052	1/1:105:0,105:0:0:105:3764:-327.147,-31.6082,0	1/1:59:0,59:0:0:59:2119:-175.939,-17.7608,0	1/1:33:0,33:0:0:33:1188:-102.111,-9.93399,0	0/1:63:30,33:30:1057:33:1188:-84.0875,0,-76.3833	0/1:51:26,25:26:936:25:892:-61.7939,0,-69.0026	1/1:61:0,61:0:0:61:2177:-187.136,-18.3628,0	1/1:52:0,52:0:0:52:1864:-159.388,-15.6536,0	1/1:33:0,33:0:0:33:1184:-102.182,-9.93399,0	1/1:51:0,51:0:0:51:1828:-159.126,-15.3525,0	1/1:38:0,38:0:0:38:1360:-118.788,-11.4391,0	1/1:15:0,15:0:0:15:540:-46.8011,-4.51545,0	1/1:88:1,87:1:36:87:3105:-262.213,-22.8934,0	1/1:101:0,101:0:0:101:3620:-309.502,-30.404,0	0/1:132:94,38:94:3372:38:1356:-79.7929,0,-263.72	1/1:68:0,68:0:0:68:2419:-206.862,-20.47,0	1/1:116:0,116:0:0:116:4168:-358.603,-34.9195,0	1/1:71:0,71:0:0:71:2551:-220.019,-21.3731,0	0/1:199:92,107:92:3293:107:3817:-275.188,0,-236.304	1/1:131:0,131:0:0:131:4693:-402.215,-39.4349,0	1/1:22:0,22:0:0:22:792:-67.8835,-6.62266,0	0/1:140:81,59:81:2893:59:2116:-143.608,0,-218.048	1/1:83:0,83:0:0:83:2965:-255.86,-24.9855,0	1/1:81:0,80:0:0:80:2866:-243.862,-24.0824,0	0/1:8:2,6:2:72:6:216:-16.6155,0,-4.42657	1/1:7:0,7:0:0:7:252:-22.1087,-2.10721,0	1/1:13:0,13:0:0:13:468:-41.0722,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.61332,-0.60206,0	1/1:4:0,4:0:0:4:144:-12.8786,-1.20412,0	1/1:168:1,167:1:36:167:5977:-520.397,-46.9748,0	1/1:254:0,254:0:0:254:9084:-781.158,-76.4616,0	0/1:41:21,20:21:752:20:716:-49.4102,0,-55.4939	1/1:2:0,2:0:0:2:72:-6.56353,-0.60206,0	0/1:136:78,58:78:2789:58:2069:-136.329,0,-210.096	0/1:26:19,7:19:684:7:252:-14.282,0,-53.9758	1/1:142:0,142:0:0:142:5108:-439.287,-42.7463,0	1/1:46:0,46:0:0:46:1652:-141.248,-13.8474,0	1/1:46:0,45:0:0:45:1612:-138.126,-13.5464,0	0/1:127:57,70:57:2036:70:2508:-182.622,0,-145.147	1/1:107:0,107:0:0:107:3844:-332.708,-32.2102,0	1/1:127:0,127:0:0:127:4560:-389.997,-38.2308,0	1/1:118:0,118:0:0:118:4236:-361.76,-35.5215,0	0/1:92:47,45:47:1688:45:1616:-111.076,0,-124.402	1/1:72:0,72:0:0:72:2588:-227.243,-21.6742,0	1/1:6:0,6:0:0:6:216:-18.8298,-1.80618,0	0/1:85:50,35:50:1777:35:1260:-82.4616,0,-133.843	1/1:15:0,15:0:0:15:531:-46.9816,-4.51545,0	1/1:12:0,12:0:0:12:400:-34.8903,-3.61236,0	0/1:69:38,31:38:1352:31:1104:-73.8546,0,-101.169	0/1:39:21,18:21:752:18:644:-43.1167,0,-56.2475	0/1:8:4,4:4:144:4:144:-10.6195,0,-10.9017	1/1:17:0,17:0:0:17:604:-52.9335,-5.11751,0	1/1:36:0,36:0:0:36:1296:-112.139,-10.8371,0	0/1:94:48,46:48:1698:46:1652:-113.695,0,-124.535	1/1:8:0,8:0:0:8:288:-24.9923,-2.40824,0	1/1:124:0,124:0:0:124:4421:-389.102,-37.3277,0	1/1:103:0,103:0:0:103:3695:-316.589,-31.0061,0	1/1:65:2,63:2:68:63:2256:-187.075,-13.1102,0	1/1:43:0,43:0:0:43:1544:-131.73,-12.9443,0	1/1:128:0,128:0:0:128:4580:-390.774,-38.5318,0	0/1:76:51,25:51:1836:25:892:-53.9675,0,-142.597	1/1:18:0,18:0:0:18:648:-56.0149,-5.41854,0	1/1:61:0,61:0:0:61:2192:-190.474,-18.3628,0	0/1:59:28,31:28:993:31:1112:-80.2252,0,-71.8289	1/1:16:0,16:0:0:16:572:-49.5263,-4.81648,0	1/1:132:0,132:0:0:132:4713:-408.159,-39.736,0	1/1:47:0,47:0:0:47:1677:-146.238,-14.1484,0	1/1:139:0,138:0:0:138:4939:-423.652,-41.5421,0	1/1:116:0,116:0:0:116:4161:-355.927,-34.9195,0	0/1:85:56,28:56:2004:28:1000:-61.4384,0,-154.901	0/1:96:49,47:49:1760:47:1684:-117.704,0,-128.746	0/1:14:7,7:7:252:7:248:-17.7583,0,-18.7908	1/1:42:0,42:0:0:42:1508:-129.485,-12.6433,0	1/1:68:0,68:0:0:68:2440:-208.955,-20.47,0	1/1:98:0,98:0:0:98:3528:-301.939,-29.5009,0	1/1:72:0,72:0:0:72:2580:-220.763,-21.6742,0	0/1:62:25,36:25:900:36:1292:-92.6453,0,-62.6332	0/1:65:32,33:32:1137:33:1184:-79.5981,0,-82.8087	0/1:135:65,70:65:2316:70:2516:-174.151,0,-167.723	1/1:35:0,35:0:0:35:1256:-109.168,-10.5361,0	1/1:54:0,54:0:0:54:1940:-167.669,-16.2556,0	1/1:67:0,67:0:0:67:2399:-207.087,-20.169,0	0/1:16:12,4:12:432:4:140:-7.00625,0,-34.3938	0/1:60:33,27:33:1188:27:972:-64.333,0,-89.1328	0/1:57:36,21:36:1284:21:752:-46.9755,0,-98.5218	1/1:60:0,60:0:0:60:2156:-183.908,-18.0618,0	1/1:71:0,71:0:0:71:2548:-217.026,-21.3731,0
chr03	16965788	.	T	C	18447.6	PASS	AB=0.445471;ABP=75.7134;AC=32;AF=0.170213;AN=188;AO=1262;CIGAR=1X;DP=10009;DPB=10009;DPRA=0.900769;EPP=2743.41;EPPR=18988.2;GTI=2;LEN=1;MEANALT=1.02632;MQM=59.954;MQMR=59.9927;NS=94;NUMALT=1;ODDS=0.454981;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43567;QR=310312;RO=8743;RPL=1262;RPP=2743.41;RPPR=18988.2;RPR=0;RUN=1;SAF=1262;SAP=2743.41;SAR=0;SRF=8743;SRP=18988.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:87:51,36:51:1827:36:1190:-81.2006,0,-138.521	0/1:75:51,24:51:1781:24:845:-53.7898,0,-137.993	0/1:183:100,83:100:3580:83:2902:-206.324,0,-267.319	0/0:343:343,0:343:12229:0:0:0,-103.253,-1100.46	0/0:81:81,0:81:2860:0:0:0,-24.3834,-257.638	0/0:75:75,0:75:2645:0:0:0,-22.5772,-238.289	0/0:124:124,0:124:4434:0:0:0,-37.3277,-399.23	0/1:177:91,86:91:3244:86:3010:-217.85,0,-238.9	0/0:149:149,0:149:5318:0:0:0,-44.8535,-478.755	0/0:106:104,2:104:3686:2:64:0,-25.8305,-325.862	0/0:24:24,0:24:827:0:0:0,-7.22472,-74.7423	0/1:57:36,21:36:1270:21:748:-50.4866,0,-97.4426	0/1:49:24,25:24:842:25:881:-64.857,0,-61.3466	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:14:14,0:14:483:0:0:0,-4.21442,-43.7973	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:235:235,0:235:8353:0:0:0,-70.742,-751.779	0/0:261:261,0:261:9228:0:0:0,-78.5688,-830.499	0/1:144:59,85:59:2090:85:2944:-221.845,0,-145.021	0/0:200:200,0:200:7086:0:0:0,-60.206,-637.806	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.101	0/0:79:78,1:78:2775:1:36:0,-20.1831,-246.393	0/1:296:141,155:141:4984:155:5302:-388.222,0,-359.608	0/0:306:306,0:306:10864:0:0:0,-92.1152,-977.67	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:295:184,111:184:6536:111:3873:-259.962,0,-499.523	0/0:129:129,0:129:4534:0:0:0,-38.8329,-408.23	0/0:85:85,0:85:3021:0:0:0,-25.5875,-272.12	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:11:7,4:7:248:4:140:-9.63325,0,-19.3529	0/0:139:139,0:139:4943:0:0:0,-41.8432,-445.02	0/0:206:205,0:205:7266:0:0:0,-61.7111,-653.636	0/1:28:17,11:17:599:11:392:-27.1912,0,-45.8091	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:109:75,34:75:2666:34:1150:-70.9762,0,-207.373	0/1:25:16,9:16:563:9:301:-19.888,0,-43.4734	0/0:247:247,0:247:8748:0:0:0,-74.3544,-787.318	0/0:37:37,0:37:1298:0:0:0,-11.1381,-117.12	0/0:33:33,0:33:1163:0:0:0,-9.93399,-104.976	0/1:128:82,45:82:2922:45:1510:-97.7299,0,-224.762	0/0:145:145,0:145:5151:0:0:0,-43.6493,-463.731	0/0:246:246,0:246:8703:0:0:0,-74.0534,-783.268	0/0:131:131,0:131:4645:0:0:0,-39.4349,-418.213	0/1:128:76,52:76:2706:52:1771:-121.133,0,-205.25	0/0:236:236,0:236:8401:0:0:0,-71.0431,-756.096	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:117:77,40:77:2731:40:1432:-93.9571,0,-210.813	0/0:81:81,0:81:2865:0:0:0,-24.3834,-258.087	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:175:97,78:97:3455:78:2609:-182.37,0,-258.483	0/1:62:34,28:34:1215:28:990:-70.7488,0,-90.9919	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:120:119,1:119:4222:1:36:0,-32.5253,-376.565	0/1:51:26,25:26:924:25:887:-64.7956,0,-68.1251	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:308:308,0:308:10905:0:0:0,-92.7172,-981.36	0/0:251:249,2:249:8869:2:72:0,-68.7218,-791.363	0/0:65:64,1:64:2292:1:27:0,-16.8672,-203.842	0/0:171:171,0:171:6057:0:0:0,-51.4761,-545.237	0/0:361:360,1:360:12714:1:36:0,-105.074,-1140.5	0/1:157:70,87:70:2495:87:2967:-219.997,0,-177.541	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:79:78,0:78:2779:0:0:0,-23.4803,-250.072	0/1:26:16,10:16:554:10:336:-22.7373,0,-42.3581	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:183:183,0:183:6510:0:0:0,-55.0885,-585.988	0/0:102:102,0:102:3621:0:0:0,-30.7051,-326.096	0/0:190:190,0:190:6766:0:0:0,-57.1957,-609.015	0/0:231:231,0:231:8205:0:0:0,-69.5379,-738.463	0/1:92:42,50:42:1474:50:1743:-129.457,0,-105.258	0/1:88:50,38:50:1788:38:1350:-95.3082,0,-134.712	0/1:17:11,6:11:383:6:197:-12.9338,0,-29.6857	0/0:174:174,0:174:6136:0:0:0,-52.3792,-552.344	0/0:99:99,0:99:3535:0:0:0,-29.802,-318.359	0/0:305:305,0:305:10824:0:0:0,-91.8141,-974.069	0/0:42:42,0:42:1482:0:0:0,-12.6433,-133.673	0/1:39:15,24:15:536:24:834:-63.6354,0,-36.8346	0/1:20:14,6:14:495:6:203:-12.5797,0,-38.8624	0/1:90:50,40:50:1779:40:1366:-96.1396,0,-133.299	0/0:13:13,0:13:438:0:0:0,-3.91339,-39.7421	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:13:5,8:5:180:8:273:-20.9882,0,-12.6387	0/1:33:19,14:19:684:14:496:-35.0403,0,-51.9563	0/1:30:17,13:17:594:13:442:-31.0734,0,-44.7547	0/0:256:255,0:255:9066:0:0:0,-76.7626,-815.631	0/0:52:52,0:52:1844:0:0:0,-15.6536,-166.238
chr03	16966010	.	A	G	8960.29	PASS	AB=0.42396;ABP=73.0208;AC=32;AF=0.170213;AN=188;AO=598;CIGAR=1X;DP=4321;DPB=4321;DPRA=1.24119;EPP=1275.62;EPPR=8033.2;GTI=1;LEN=1;MEANALT=1;MQM=59.9565;MQMR=59.928;NS=94;NUMALT=1;ODDS=2.7534;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21168;QR=132227;RO=3722;RPL=3;RPP=1275.62;RPPR=8024.54;RPR=595;RUN=1;SAF=0;SAP=1301.55;SAR=598;SRF=1;SRP=8076.55;SRR=3721;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:59:41,18:41:1448:18:644:-40.5298,0,-112.855	0/1:37:18,19:18:644:19:676:-50.0299,0,-47.1525	0/0:83:83,0:83:2951:0:0:0,-24.9855,-264.535	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:54:54,0:54:1891:0:0:0,-16.2556,-170.302	0/1:46:23,23:23:820:23:828:-60.9967,0,-60.2751	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:48:48,0:48:1700:0:0:0,-14.4494,-152.656	0/0:27:27,0:27:954:0:0:0,-8.12781,-86.174	0/1:53:34,19:34:1220:19:680:-45.5746,0,-94.1522	0/1:31:11,20:11:392:20:716:-55.4358,0,-26.2881	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/0:36:36,0:36:1246:0:0:0,-10.8371,-112.438	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:86:86,0:86:3049:0:0:0,-25.8886,-274.637	0/0:67:67,0:67:2379:0:0:0,-20.169,-214.368	0/1:46:32,14:32:1127:14:504:-31.8507,0,-87.8892	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0966	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/1:141:83,58:83:2962:58:2056:-142.864,0,-224.176	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:18:18,0:18:625:0:0:0,-5.41854,-56.5725	0/1:67:35,32:35:1242:32:1139:-82.6494,0,-91.9139	0/0:78:78,0:78:2743:0:0:0,-23.4803,-247.11	0/0:67:67,0:67:2379:0:0:0,-20.169,-214.368	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/0:95:95,0:95:3363:0:0:0,-28.5978,-302.889	0/0:85:85,0:85:3021:0:0:0,-25.5875,-272.112	0/1:41:19,22:19:680:22:780:-58.1808,0,-49.1869	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:60:43,17:43:1523:17:593:-35.6329,0,-119.301	0/1:23:17,6:17:608:6:212:-12.5011,0,-48.1283	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.94	0/0:45:45,0:45:1576:0:0:0,-13.5463,-142.127	0/0:30:30,0:30:1051:0:0:0,-9.0309,-94.8996	0/1:51:36,15:36:1288:15:517:-31.5021,0,-100.871	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:41:41,0:41:1449:0:0:0,-12.3422,-130.704	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:36:23,13:23:828:13:468:-31.6226,0,-64.007	0/0:72:72,0:72:2564:0:0:0,-21.6742,-231.011	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:59:44,15:44:1576:15:532:-30.4523,0,-124.371	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:70:47,23:47:1679:23:815:-52.5987,0,-130.195	0/1:14:7,7:7:248:7:248:-18.4498,0,-18.4498	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:45:44,0:44:1564:0:0:0,-13.2453,-140.731	0/1:82:39,43:39:1386:43:1525:-112.857,0,-100.351	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:116:116,0:116:4144:0:0:0,-34.9195,-373.144	0/0:106:106,0:106:3786:0:0:0,-31.9092,-340.852	0/0:17:16,1:16:572:1:36:0,-1.51923,-48.2152	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:258:257,1:257:9086:1:36:0,-74.0675,-814.128	0/1:42:18,24:18:644:24:841:-63.3347,0,-45.6473	0/0:31:28,3:28:996:3:93:0,-0.6552,-81.2666	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.139	0/1:53:27,26:27:933:26:910:-66.231,0,-68.3258	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:69:68,1:68:2423:1:36:0,-17.1728,-214.726	0/0:86:86,0:86:3052:0:0:0,-25.8886,-274.909	0/1:49:34,15:34:1212:15:536:-33.8243,0,-94.6359	0/1:41:29,12:29:1044:12:432:-26.879,0,-81.9326	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.689	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.078	0/0:159:158,1:158:5594:1:36:0,-44.2655,-499.988	0/0:63:63,0:63:2213:0:0:0,-18.9649,-199.434	0/1:24:14,10:14:504:10:356:-25.1565,0,-38.4734	0/1:39:21,18:21:748:18:635:-45.7368,0,-55.9051	0/1:61:30,31:30:1063:31:1100:-80.9475,0,-77.618	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.427	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.282	0/1:31:16,15:16:567:15:532:-38.8812,0,-42.0288	0/1:72:39,33:39:1381:33:1139:-81.1376,0,-102.9	0/1:39:11,28:11:378:28:977:-76.5001,0,-22.609	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989
chr03	17999851	.	A	G	244435	PASS	AB=0.500561;ABP=3.02249;AC=154;AF=0.827957;AN=186;AO=11159;CIGAR=1X;DP=13422;DPB=13422;DPRA=72.9348;EPP=24043.8;EPPR=4828.21;GTI=1;LEN=1;MEANALT=1.11957;MQM=59.9311;MQMR=59.9947;NS=93;NUMALT=1;ODDS=5.11673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=398223;QR=80683;RO=2250;RPL=22;RPP=24043.8;RPPR=4836.85;RPR=11137;RUN=1;SAF=11159;SAP=24234.5;SAR=0;SRF=2249;SRP=4880.14;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:21,12:21:752:12:432:-29.2872,0,-58.0723	0/1:192:92,100:92:3292:100:3557:-262.534,0,-238.702	0/1:140:76,64:76:2732:64:2292:-164.375,0,-203.978	1/1:411:0,411:0:0:411:14633:-1316.71,-123.723,0	1/1:121:0,121:0:0:121:4284:-385.73,-36.4246,0	1/1:95:1,94:1:36:94:3340:-297.217,-24.9996,0	1/1:280:0,279:0:0:279:9962:-896.153,-83.9874,0	0/1:235:119,116:119:4268:116:4117:-299.97,0,-313.555	1/1:149:0,149:0:0:149:5278:-475.096,-44.8535,0	1/1:165:0,163:0:0:163:5794:-521.193,-49.0679,0	1/1:52:1,50:1:36:50:1788:-157.604,-12.1141,0	0/1:85:37,48:37:1328:48:1697:-127.381,0,-94.2347	0/1:111:57,54:57:2048:54:1936:-141.102,0,-151.177	1/1:84:0,84:0:0:84:2984:-268.781,-25.2865,0	1/1:93:1,92:1:36:92:3293:-292.982,-24.3975,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:80:0,80:0:0:80:2872:-258.688,-24.0824,0	1/1:83:0,83:0:0:83:2943:-265.043,-24.9855,0	1/1:34:0,34:0:0:34:1208:-109.025,-10.235,0	1/1:330:1,329:1:36:329:11750:-1053.76,-95.7416,0	1/1:207:0,207:0:0:207:7414:-667.276,-62.3132,0	0/1:124:88,36:88:3160:36:1277:-77.9034,0,-247.296	1/1:111:0,111:0:0:111:3972:-357.671,-33.4143,0	1/1:180:0,180:0:0:180:6414:-577.212,-54.1854,0	1/1:93:0,93:0:0:93:3321:-299.107,-27.9958,0	0/1:500:235,264:235:8372:264:9442:-699.164,0,-602.91	1/1:242:1,241:1:36:241:8571:-767.777,-69.251,0	1/1:65:0,65:0:0:65:2331:-210.049,-19.567,0	0/1:346:181,165:181:6485:165:5880:-425.152,0,-479.576	1/1:248:4,244:4:140:244:8715:-771.199,-61.7109,0	1/1:201:0,201:0:0:201:7144:-642.743,-60.507,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	.:.:.:.:.:.:.:.	1/1:323:1,322:1:36:322:11488:-1030.2,-93.6344,0	1/1:263:3,260:3:108:260:9306:-827.428,-69.0957,0	0/1:72:39,33:39:1404:33:1180:-84.8339,0,-104.985	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:340:159,180:159:5701:180:6393:-473.052,0,-410.796	0/1:32:22,10:22:788:10:360:-23.1113,0,-61.6072	1/1:192:0,192:0:0:192:6872:-618.549,-57.7978,0	1/1:129:0,129:0:0:129:4623:-416.231,-38.8329,0	1/1:112:0,111:0:0:111:3983:-358.367,-33.4143,0	0/1:160:66,94:66:2364:94:3346:-253.19,0,-164.854	1/1:218:0,218:0:0:218:7822:-703.917,-65.6245,0	1/1:264:0,263:0:0:263:9388:-844.507,-79.1709,0	1/1:176:0,176:0:0:176:6297:-566.82,-52.9813,0	0/1:230:119,111:119:4249:111:3978:-288.941,0,-313.351	1/1:184:0,184:0:0:184:6560:-590.376,-55.3895,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:172:72,100:72:2580:100:3592:-271.708,0,-180.672	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	1/1:18:0,18:0:0:18:644:-58.2902,-5.41854,0	0/1:207:97,109:97:3488:109:3885:-287.472,0,-251.758	0/1:87:29,58:29:1044:58:2084:-161.64,0,-68.0852	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	1/1:12:0,12:0:0:12:432:-39.2178,-3.61236,0	1/1:81:0,81:0:0:81:2879:-259.341,-24.3834,0	0/1:116:61,55:61:2192:55:1976:-143.195,0,-162.626	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:364:0,364:0:0:364:12971:-1167.12,-109.575,0	1/1:270:8,262:8:284:262:9337:-814.365,-55.3747,0	1/1:89:5,84:5:180:84:2993:-253.046,-10.2396,0	1/1:113:1,112:1:36:112:3986:-355.328,-30.4181,0	1/1:244:0,244:0:0:244:8699:-782.885,-73.4513,0	0/1:106:58,48:58:2080:48:1728:-123.896,0,-155.561	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:115:0,115:0:0:115:4105:-369.634,-34.6185,0	0/1:146:85,61:85:3056:61:2180:-152.516,0,-231.318	1/1:31:0,31:0:0:31:1104:-99.6569,-9.33193,0	1/1:150:0,150:0:0:150:5315:-478.472,-45.1545,0	1/1:103:0,103:0:0:103:3689:-332.2,-31.0061,0	1/1:249:0,248:0:0:248:8904:-800.976,-74.6554,0	1/1:245:0,245:0:0:245:8762:-788.563,-73.7524,0	0/1:149:60,89:60:2160:89:3173:-240.939,0,-149.812	0/1:220:102,116:102:3660:116:4172:-309.676,0,-263.619	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:177:1,176:1:36:176:6290:-562.518,-49.684,0	1/1:165:0,165:0:0:165:5898:-530.885,-49.67,0	1/1:338:0,337:0:0:337:11971:-1076.89,-101.447,0	1/1:180:0,180:0:0:180:6438:-579.489,-54.1854,0	0/1:77:41,36:41:1476:36:1280:-92.3239,0,-109.957	0/1:145:76,69:76:2732:69:2465:-178.452,0,-202.473	0/1:214:104,110:104:3744:110:3912:-287.852,0,-272.738	1/1:62:0,62:0:0:62:2215:-199.614,-18.6639,0	1/1:150:0,150:0:0:150:5369:-483.295,-45.1545,0	1/1:97:0,97:0:0:97:3434:-309.267,-29.1999,0	0/1:21:10,11:10:360:11:388:-28.9357,0,-26.4227	0/1:67:38,29:38:1368:29:1032:-73.0199,0,-103.252	0/1:117:70,47:70:2516:47:1668:-115.185,0,-191.471	1/1:207:0,207:0:0:207:7403:-666.313,-62.3132,0	1/1:164:0,164:0:0:164:5850:-526.61,-49.3689,0
chr03	17999909	.	TAAT	CAAT,CAAC	185043	PASS	AB=0.462004,0.532546;ABP=44.4287,33.3997;AC=154,32;AF=0.827957,0.172043;AN=186;AO=6788,1769;CIGAR=1X3M,1X2M1X;DP=8602;DPB=8602;DPRA=0,1.11718;EPP=14743,3844.34;EPPR=22.5536;GTI=2;LEN=1,4;MEANALT=1.8172,2.4;MQM=59.9929,59.9904;MQMR=60;NS=93;NUMALT=2;ODDS=1.82758;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=242123,61410;QR=310;RO=9;RPL=0,0;RPP=14743,3844.34;RPPR=22.5536;RPR=6788,1769;RUN=1,1;SAF=0,0;SAP=14743,3844.34;SAR=6788,1769;SRF=0;SRP=22.5536;SRR=9;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:60:0,25,34:0:0:25,34:896,1161:-167.388,-94.3034,-86.7777,-73.1805,0,-62.9454	1/2:62:3,23,36:3:100:23,36:819,1277:-161.819,-95.9693,-97.1375,-58.6811,0,-55.935	1/2:170:0,93,77:0:0:93,77:3269,2697:-485.877,-219.796,-191.8,-266.432,0,-243.253	1/1:159:0,157,0:0:0:157,0:5611,0:-504.777,-47.2617,0,-504.777,-47.2617,-504.777	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/1:22:0,22,0:0:0:22,0:750,0:-67.8122,-6.62266,0,-67.8122,-6.62266,-67.8122	1/1:69:0,69,0:0:0:69,0:2468,0:-222.374,-20.7711,0,-222.374,-20.7711,-222.374	1/2:85:0,52,32:0:0:52,32:1860,1101:-241.138,-89.4603,-73.8067,-151.725,0,-142.092	1/1:99:0,99,0:0:0:99,0:3502,0:-315.388,-29.802,0,-315.388,-29.802,-315.388	1/1:58:0,58,0:0:0:58,0:2061,0:-185.759,-17.4597,0,-185.759,-17.4597,-185.759	1/1:72:0,71,1:0:0:71,1:2535,36:-228.041,-21.3731,0,-225.104,-18.0759,-224.803	1/2:127:0,73,53:0:0:73,53:2591,1818:-358.697,-147.584,-125.609,-211.102,0,-195.147	1/2:119:0,49,69:0:0:49,69:1736,2392:-335.826,-194.403,-179.652,-141.414,0,-120.643	1/1:90:0,90,0:0:0:90,0:3219,0:-289.932,-27.0927,0,-289.932,-27.0927,-289.932	1/1:78:1,77,0:1:33:77,0:2764,0:-245.702,-20.1812,0,-246.003,-23.1793,-248.671	1/1:74:0,74,0:0:0:74,0:2638,0:-237.667,-22.2762,0,-237.667,-22.2762,-237.667	1/1:49:0,49,0:0:0:49,0:1752,0:-157.964,-14.7505,0,-157.964,-14.7505,-157.964	1/1:45:0,45,0:0:0:45,0:1589,0:-143.299,-13.5464,0,-143.299,-13.5464,-143.299	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/1:176:0,172,0:0:0:172,0:6130,0:-551.504,-51.7772,0,-551.504,-51.7772,-551.504	1/1:162:0,160,0:0:0:160,0:5723,0:-514.831,-48.1648,0,-514.831,-48.1648,-514.831	1/2:97:0,27,69:0:0:27,69:968,2397:-273.878,-194.923,-186.795,-79.0171,0,-58.2461	1/1:106:0,105,1:0:0:105,1:3736,23:-336.209,-31.6082,0,-334.441,-29.6093,-334.14	1/1:55:0,54,1:0:0:54,1:1921,36:-172.805,-16.2556,0,-169.867,-12.9584,-169.566	1/1:44:0,44,0:0:0:44,0:1584,0:-142.852,-13.2453,0,-142.852,-13.2453,-142.852	1/2:204:0,94,109:0:0:94,109:3352,3732:-576.206,-302.955,-274.658,-273.281,0,-240.469	1/1:289:0,289,0:0:0:289,0:10301,0:-927.003,-86.9977,0,-927.003,-86.9977,-927.003	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/2:341:0,182,159:0:0:182,159:6509,5546:-982.164,-451.413,-396.625,-531.104,0,-483.24	1/1:76:0,73,2:0:0:73,2:2584,71:-232.454,-21.9752,0,-226.669,-16.1867,-226.067	1/1:101:0,99,0:0:0:99,0:3542,0:-318.721,-29.802,0,-318.721,-29.802,-318.721	.:.:.:.:.:.:.:.	1/1:17:0,17,0:0:0:17,0:599,0:-54.2381,-5.11751,0,-54.2381,-5.11751,-54.2381	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:11:0,11,0:0:0:11,0:372,0:-33.8038,-3.31133,0,-33.8038,-3.31133,-33.8038	1/2:8:0,2,6:0:0:2,6:72,210:-23.3133,-17.4359,-16.8339,-6.23466,0,-4.42848	1/1:240:3,236,0:3:106:236,0:8414,0:-747.376,-62.4152,0,-748.279,-71.0431,-756.912	1/1:75:0,74,1:0:0:74,1:2651,36:-238.476,-22.2762,0,-235.538,-18.979,-235.237	1/2:68:0,32,36:0:0:32,36:1135,1247:-194.168,-101.694,-92.0607,-92.8251,0,-81.988	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:94:0,50,43:0:0:50,43:1796,1465:-265.356,-118.834,-103.783,-146.511,0,-133.567	1/2:50:0,30,20:0:0:30,20:1076,700:-145.071,-57.3023,-48.2714,-88.122,0,-82.1014	1/1:163:0,163,0:0:0:163,0:5812,0:-523.194,-49.0679,0,-523.194,-49.0679,-523.194	1/1:63:0,62,0:0:0:62,0:2223,0:-199.993,-18.6639,0,-199.993,-18.6639,-199.993	1/1:74:0,73,0:0:0:73,0:2603,0:-234.198,-21.9752,0,-234.198,-21.9752,-234.198	1/2:116:0,44,72:0:0:44,72:1567,2490:-330.402,-202.678,-189.433,-128.076,0,-106.401	1/1:77:1,76,0:1:36:76,0:2698,0:-239.466,-19.581,0,-239.767,-22.8783,-242.704	1/1:132:1,131,0:1:35:131,0:4688,0:-418.582,-36.2373,0,-418.883,-39.4349,-421.731	1/1:100:0,100,0:0:0:100,0:3574,0:-321.867,-30.103,0,-321.867,-30.103,-321.867	1/2:105:0,54,51:0:0:54,51:1940,1791:-304.383,-146.117,-129.862,-158.621,0,-143.268	1/1:153:0,153,0:0:0:153,0:5479,0:-493.236,-46.0576,0,-493.236,-46.0576,-493.236	1/1:15:0,15,0:0:0:15,0:531,0:-48.1219,-4.51545,0,-48.1219,-4.51545,-48.1219	1/2:141:0,63,78:0:0:63,78:2255,2734:-406.716,-222.824,-203.859,-184.247,0,-160.767	1/1:52:0,52,0:0:0:52,0:1872,0:-168.759,-15.6536,0,-168.759,-15.6536,-168.759	1/2:7:0,6,1:0:0:6,1:216,30:-20.3744,-2.69854,-0.892356,-17.9843,0,-17.6833	1/2:161:0,82,78:0:0:82,78:2923,2732:-460.661,-222.392,-197.708,-238.369,0,-214.889	1/2:39:0,23,15:0:0:23,15:828,532:-110.96,-43.3942,-36.4705,-67.618,0,-63.1025	1/2:11:0,2,9:0:0:2,9:72,300:-30.4936,-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chr03	17999914	.	G	A	141627	PASS	AB=0.45586;ABP=58.0278;AC=154;AF=0.827957;AN=186;AO=6639;CIGAR=1X;DP=8424;DPB=8424;DPRA=0;EPP=14419.4;EPPR=3874.75;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9902;MQMR=59.9905;NS=93;NUMALT=1;ODDS=2.91604;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235782;QR=63552;RO=1783;RPL=0;RPP=14419.4;RPPR=3874.75;RPR=6639;RUN=1;SAF=0;SAP=14419.4;SAR=6639;SRF=0;SRP=3874.75;SRR=1783;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:34,26:34:1202:26:932:-65.7773,0,-90.0628	0/1:60:36,24:36:1292:24:838:-57.6745,0,-98.522	0/1:168:78,90:78:2786:90:3211:-238.64,0,-200.407	1/1:155:0,155:0:0:155:5555:-500.073,-46.6597,0	1/1:26:0,26:0:0:26:929:-83.9285,-7.82678,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:67:0,67:0:0:67:2388:-215.178,-20.169,0	0/1:84:33,51:33:1188:51:1803:-137.263,0,-81.9421	1/1:89:0,89:0:0:89:3188:-287.144,-26.7917,0	1/1:57:0,57:0:0:57:2016:-181.711,-17.1587,0	1/1:73:1,72:1:36:72:2551:-226.243,-18.3769,0	0/1:128:54,74:54:1924:74:2608:-196.436,0,-134.905	0/1:113:71,42:71:2518:42:1479:-99.3874,0,-192.799	1/1:91:0,91:0:0:91:3238:-291.642,-27.3937,0	1/1:78:2,76:2:72:76:2704:-236.768,-16.6436,0	1/1:74:0,74:0:0:74:2625:-236.497,-22.2762,0	1/1:48:0,48:0:0:48:1699:-153.195,-14.4494,0	1/1:44:0,44:0:0:44:1545:-139.341,-13.2453,0	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	1/1:170:0,170:0:0:170:6046:-544.245,-51.1751,0	1/1:164:0,164:0:0:164:5809:-522.926,-49.3689,0	0/1:96:69,27:69:2450:27:949:-56.8239,0,-191.855	1/1:98:1,97:1:32:97:3397:-302.747,-26.3016,0	1/1:58:0,58:0:0:58:2072:-186.75,-17.4597,0	1/1:45:0,45:0:0:45:1593:-143.658,-13.5464,0	0/1:202:108,93:108:3820:93:3328:-238.873,0,-283.139	1/1:279:0,279:0:0:279:9906:-891.358,-83.9874,0	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	0/1:334:158,176:158:5647:176:6273:-464.12,0,-407.804	1/1:72:2,70:2:72:70:2499:-218.326,-14.8374,0	1/1:101:0,101:0:0:101:3588:-323.127,-30.404,0	.:.:.:.:.:.:.:.	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:12:0,12:0:0:12:419:-38.0427,-3.61236,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:230:3,227:3:108:227:7997:-709.687,-59.1617,0	1/1:72:1,71:1:36:71:2543:-225.522,-18.0759,0	0/1:67:35,32:35:1252:32:1140:-82.7402,0,-92.8161	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:90:42,48:42:1482:48:1713:-127.361,0,-106.578	0/1:49:20,29:20:720:29:1019:-77.2708,0,-50.3783	1/1:161:0,161:0:0:161:5722:-515.098,-48.4658,0	1/1:61:0,61:0:0:61:2161:-194.757,-18.3628,0	1/1:72:0,72:0:0:72:2533:-228.221,-21.6742,0	0/1:109:71,38:71:2548:38:1356:-89.5282,0,-196.758	1/1:74:0,74:0:0:74:2644:-238.206,-22.2762,0	1/1:128:0,128:0:0:128:4500:-405.172,-38.5318,0	1/1:95:0,95:0:0:95:3351:-301.807,-28.5979,0	0/1:102:51,51:51:1820:51:1818:-133.195,0,-133.376	1/1:152:0,152:0:0:152:5425:-488.381,-45.7566,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:140:80,60:80:2822:60:2139:-150.633,0,-212.071	1/1:49:0,49:0:0:49:1748:-157.604,-14.7505,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:158:77,81:77:2759:81:2891:-212.863,0,-200.988	0/1:40:17,23:17:608:23:811:-61.2688,0,-43.0108	0/1:10:8,2:8:288:2:68:-3.44741,0,-23.2571	1/1:11:0,11:0:0:11:394:-35.8015,-3.31133,0	1/1:59:0,59:0:0:59:2082:-187.649,-17.7608,0	0/1:141:69,72:69:2438:72:2519:-184.517,0,-177.23	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:126:0,126:0:0:126:4503:-405.439,-37.9298,0	1/1:134:2,132:2:72:132:4698:-416.145,-33.5013,0	1/1:59:1,58:1:36:58:2052:-181.352,-14.1625,0	1/1:85:0,85:0:0:85:3023:-272.299,-25.5876,0	1/1:113:0,113:0:0:113:4028:-362.708,-34.0164,0	0/1:193:158,35:158:5660:35:1234:-53.2639,0,-451.421	1/1:55:1,54:1:36:54:1901:-167.768,-12.9584,0	1/1:25:0,25:0:0:25:896:-80.7699,-7.52575,0	0/1:63:35,28:35:1248:28:990:-70.449,0,-93.66	1/1:41:0,41:0:0:41:1443:-130.165,-12.3422,0	1/1:129:0,129:0:0:129:4561:-410.659,-38.8329,0	1/1:97:0,97:0:0:97:3441:-309.904,-29.1999,0	1/1:88:0,88:0:0:88:3124:-281.386,-26.4906,0	1/1:140:0,140:0:0:140:5019:-451.855,-42.1442,0	0/1:80:47,33:47:1669:33:1142:-79,0,-126.413	0/1:100:52,48:52:1855:48:1716:-124.623,0,-137.126	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:79:0,79:0:0:79:2822:-254.219,-23.7814,0	1/1:106:2,104:2:72:104:3689:-325.377,-25.0725,0	1/1:218:0,218:0:0:218:7766:-698.974,-65.6245,0	1/1:72:0,72:0:0:72:2549:-229.66,-21.6742,0	0/1:106:59,47:59:2107:47:1661:-117.867,0,-157.989	0/1:53:25,28:25:888:28:995:-73.9094,0,-64.2844	0/1:188:89,99:89:3196:99:3528:-261.135,0,-231.269	1/1:33:0,33:0:0:33:1153:-104.074,-9.93399,0	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:88:0,88:0:0:88:3123:-281.295,-26.4906,0	0/1:57:35,22:35:1245:22:776:-53.0034,0,-95.194	0/1:133:70,63:70:2484:63:2225:-160.477,0,-183.775	0/1:101:76,25:76:2704:25:888:-49.835,0,-213.198	1/1:182:0,182:0:0:182:6457:-581.22,-54.7875,0	1/1:113:0,113:0:0:113:4031:-362.977,-34.0164,0
chr03	18509637	.	TG	GG	137899	PASS	AB=0.785191;ABP=871.248;AC=165;AF=0.87766;AN=188;AO=6145;CIGAR=1X1M;DP=6448;DPB=6448;DPRA=0;EPP=13260;EPPR=628.394;GTI=12;LEN=1;MEANALT=1.08511;MQM=59.9845;MQMR=59.9653;NS=94;NUMALT=1;ODDS=0.99531;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219448;QR=10252;RO=288;RPL=10;RPP=13260;RPPR=628.394;RPR=6135;RUN=1;SAF=6145;SAP=13346.7;SAR=0;SRF=288;SRP=628.394;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:35:1,34:1:36:34:1220:-106.509,-6.93778,0	1/1:49:1,48:1:36:48:1728:-152.207,-11.1522,0	1/1:159:0,159:0:0:159:5686:-511.855,-47.8638,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:104:0,104:0:0:104:3671:-330.59,-31.3071,0	0/1:72:9,63:9:311:63:2260:-181.988,0,-6.64928	1/1:63:0,63:0:0:63:2228:-200.781,-18.9649,0	1/1:74:0,68:0:0:68:2397:-215.624,-20.47,0	1/1:110:1,109:1:36:109:3901:-347.685,-29.515,0	0/1:71:15,56:15:525:56:1998:-158.72,0,-26.2055	0/1:62:16,46:16:574:46:1637:-128.953,0,-33.3305	1/1:117:0,115:0:0:115:4106:-369.372,-34.6185,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:65:0,65:0:0:65:2323:-209.329,-19.567,0	1/1:63:1,62:1:36:62:2203:-194.936,-15.3666,0	1/1:39:0,39:0:0:39:1396:-125.809,-11.7402,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:146:0,146:0:0:146:5215:-469.488,-43.9504,0	1/1:100:0,100:0:0:100:3540:-318.808,-30.103,0	0/1:19:5,14:5:178:14:504:-39.9785,0,-10.6491	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:116:12,104:12:430:104:3735:-301.43,0,-4.12063	1/1:176:0,176:0:0:176:6270:-564.39,-52.9813,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:120:11,109:11:396:109:3908:-315.93,-0.140851,0	1/1:225:0,225:0:0:225:8020:-721.816,-67.7318,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:5:2,3:2:72:3:93:-7.17158,0,-5.33157	1/1:9:0,9:0:0:9:304:-27.6862,-2.70927,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:204:2,201:2:72:201:7156:-637.258,-54.6322,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	0/1:49:8,41:8:280:41:1472:-118.026,0,-10.7883	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:62:13,49:13:466:49:1756:-139.66,0,-23.601	0/1:31:12,19:12:432:19:680:-52.1972,0,-29.8893	1/1:69:0,69:0:0:69:2469:-222.462,-20.7711,0	1/1:80:0,80:0:0:80:2857:-257.366,-24.0824,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:28:0,27:0:0:27:968:-87.0776,-8.12781,0	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	1/1:123:1,122:1:36:122:4374:-390.235,-33.4284,0	1/1:75:0,75:0:0:75:2673:-240.814,-22.5773,0	0/1:64:11,53:11:392:53:1900:-152.012,0,-16.3543	1/1:77:0,77:0:0:77:2736:-246.481,-23.1793,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:45:3,42:3:108:42:1508:-125.939,-3.47118,0	1/1:86:0,86:0:0:86:3061:-275.718,-25.8886,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:70:4,66:4:144:66:2343:-197.814,-7.75848,0	0/1:7:3,4:3:106:4:144:-11.2064,0,-7.78189	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	0/1:86:16,69:16:569:69:2470:-196.606,0,-25.5951	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:189:0,189:0:0:189:6745:-607.123,-56.8947,0	1/1:139:0,139:0:0:139:4969:-447.357,-41.8432,0	1/1:63:0,63:0:0:63:2200:-198.26,-18.9649,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:133:0,132:0:0:132:4669:-420.008,-39.736,0	0/1:33:4,29:4:140:29:1036:-83.6199,0,-3.01059	1/1:69:0,69:0:0:69:2455:-221.205,-20.7711,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:27:11,16:11:396:16:576:-44.0472,0,-27.8549	1/1:16:0,16:0:0:16:549:-49.7324,-4.81648,0	1/1:86:1,85:1:36:85:3052:-271.311,-22.2903,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:147:0,147:0:0:147:5221:-469.836,-44.2514,0	1/1:114:0,114:0:0:114:4104:-369.543,-34.3174,0	0/1:32:11,21:11:394:21:756:-58.7343,0,-26.1685	0/1:87:11,76:11:386:76:2713:-218.223,0,-8.88673	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:71:0,71:0:0:71:2524:-227.409,-21.3731,0	1/1:107:0,107:0:0:107:3791:-341.386,-32.2102,0	1/1:123:0,123:0:0:123:4416:-397.611,-37.0267,0	1/1:76:0,76:0:0:76:2705:-243.693,-22.8783,0	0/1:49:14,35:14:504:35:1256:-98.5948,0,-30.9476	0/1:25:5,20:5:180:20:720:-57.603,0,-9.02631	0/1:113:31,80:31:1086:80:2872:-224.931,0,-64.2731	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:91:0,91:0:0:91:3272:-294.699,-27.3937,0	1/1:95:0,95:0:0:95:3408:-306.933,-28.5979,0	0/1:48:5,43:5:180:43:1531:-123.633,0,-2.10262	0/1:98:11,87:11:396:87:3099:-249.635,0,-6.48181	0/1:68:35,33:35:1247:33:1188:-86.7586,0,-92.0637	1/1:106:1,104:1:36:104:3720:-331.403,-28.3697,0	1/1:102:0,102:0:0:102:3655:-329.153,-30.7051,0
chr03	18561908	.	T	C	110810	PASS	AB=0.455561;ABP=39.8728;AC=156;AF=0.829787;AN=188;AO=5120;CIGAR=1X;DP=6302;DPB=6302;DPRA=0;EPP=11120.9;EPPR=2563.18;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9984;MQMR=60;NS=94;NUMALT=1;ODDS=0.34645;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182278;QR=42249;RO=1179;RPL=0;RPP=11120.9;RPPR=2563.18;RPR=5120;RUN=1;SAF=0;SAP=11120.9;SAR=5120;SRF=0;SRP=2563.18;SRR=1179;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:20,24:20:705:24:861:-64.5668,0,-50.5275	0/1:39:28,11:28:996:11:392:-23.8799,0,-78.2147	0/1:104:61,43:61:2188:43:1517:-105.514,0,-165.879	1/1:191:0,191:0:0:191:6782:-610.454,-57.4967,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:34:0,34:0:0:34:1194:-107.761,-10.235,0	0/1:71:31,40:31:1112:40:1440:-108.525,0,-79.0182	1/1:79:0,79:0:0:79:2789:-251.25,-23.7814,0	1/1:80:0,80:0:0:80:2844:-256.198,-24.0824,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:100:46,54:46:1652:54:1910:-142.073,0,-118.865	0/1:65:40,25:40:1440:25:882:-60.1296,0,-110.331	1/1:51:0,51:0:0:51:1795:-161.829,-15.3525,0	1/1:39:0,39:0:0:39:1376:-124.136,-11.7402,0	1/1:40:1,39:1:36:39:1374:-120.359,-8.44293,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:88:0,88:0:0:88:3148:-283.546,-26.4906,0	1/1:124:0,124:0:0:124:4410:-397.072,-37.3277,0	0/1:111:76,35:76:2698:35:1256:-79.931,0,-209.647	1/1:76:0,76:0:0:76:2723:-245.313,-22.8783,0	1/1:76:0,75:0:0:75:2644:-237.845,-22.5773,0	1/1:60:3,57:3:108:57:2044:-174.157,-7.98663,0	0/1:188:112,76:112:4024:76:2732:-189.529,0,-305.753	1/1:200:0,200:0:0:200:7108:-639.778,-60.206,0	1/1:24:0,24:0:0:24:848:-76.6397,-7.22472,0	0/1:297:167,130:167:5989:130:4639:-328.267,0,-449.707	1/1:100:2,98:2:72:98:3503:-308.643,-23.2663,0	1/1:71:0,70:0:0:70:2494:-224.352,-21.0721,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:8:4,4:4:144:4:136:-10.1667,0,-10.9054	1/1:146:0,146:0:0:146:5177:-466.069,-43.9504,0	1/1:108:0,108:0:0:108:3847:-346.427,-32.5112,0	0/1:35:17,18:17:608:18:629:-46.3977,0,-44.516	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:71:42,29:42:1497:29:1036:-72.1762,0,-113.649	0/1:25:12,13:12:432:13:459:-34.1183,0,-31.6954	1/1:106:0,106:0:0:106:3781:-340.488,-31.9092,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:72:44,28:44:1576:28:1008:-69.3622,0,-120.457	1/1:69:0,69:0:0:69:2456:-221.293,-20.7711,0	1/1:160:0,160:0:0:160:5664:-509.882,-48.1648,0	1/1:83:0,83:0:0:83:2979:-268.341,-24.9855,0	0/1:98:48,50:48:1724:50:1788:-131.701,0,-125.944	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:71:37,34:37:1328:34:1206:-87.4713,0,-98.4491	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:105:58,47:58:2084:47:1680:-119.879,0,-156.222	0/1:41:22,19:22:792:19:669:-48.1917,0,-59.2634	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:57:0,57:0:0:57:2024:-182.43,-17.1587,0	0/1:55:24,31:24:864:31:1091:-81.9421,0,-61.5259	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:218:0,217:0:0:217:7726:-695.013,-65.3235,0	1/1:135:0,135:0:0:135:4817:-433.685,-40.6391,0	1/1:34:3,31:3:108:31:1116:-90.6765,-0.15985,0	1/1:66:0,66:0:0:66:2350:-211.757,-19.868,0	1/1:88:0,88:0:0:88:3119:-280.936,-26.4906,0	0/1:84:61,23:61:2180:23:809:-47.8418,0,-171.18	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:21:11,10:11:392:10:345:-25.0592,0,-29.2984	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:97:0,97:0:0:97:3449:-310.623,-29.1999,0	1/1:101:0,101:0:0:101:3618:-325.826,-30.404,0	1/1:93:0,93:0:0:93:3311:-298.208,-27.9958,0	1/1:135:0,135:0:0:135:4835:-435.303,-40.6391,0	0/1:29:5,24:5:180:24:864:-69.3527,0,-7.82219	0/1:111:45,66:45:1616:66:2368:-179.964,0,-112.316	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:83:0,83:0:0:83:2950:-265.735,-24.9855,0	1/1:127:0,127:0:0:127:4526:-407.506,-38.2308,0	1/1:139:0,139:0:0:139:4943:-445.018,-41.8432,0	1/1:43:0,43:0:0:43:1512:-136.37,-12.9443,0	0/1:63:35,28:35:1260:28:1000:-71.3505,0,-94.7406	0/1:33:17,16:17:608:16:568:-41.5179,0,-45.118	0/1:85:52,33:52:1864:33:1180:-80.9205,0,-142.452	1/1:26:0,26:0:0:26:927:-83.7474,-7.82678,0	1/1:70:0,70:0:0:70:2485:-223.902,-21.0721,0	1/1:57:0,57:0:0:57:2014:-181.532,-17.1587,0	0/1:18:8,10:8:288:10:353:-26.69,0,-20.8489	0/1:66:26,40:26:936:40:1406:-106.968,0,-64.6915	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	1/1:109:0,109:0:0:109:3896:-350.835,-32.8123,0	1/1:94:0,94:0:0:94:3337:-300.548,-28.2968,0
chr03	18565348	.	T	G	135336	PASS	AB=0.480919;ABP=11.1313;AC=154;AF=0.827957;AN=186;AO=6305;CIGAR=1X;DP=7659;DPB=7659;DPRA=0;EPP=13659.4;EPPR=2917.15;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9914;MQMR=60;NS=93;NUMALT=1;ODDS=0.16354;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222825;QR=48324;RO=1350;RPL=6302;RPP=13668.1;RPPR=2917.15;RPR=3;RUN=1;SAF=6304;SAP=13685.5;SAR=1;SRF=1350;SRP=2934.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:22,27:22:773:27:953:-71.3328,0,-55.139	0/1:53:36,17:36:1292:17:612:-39.4588,0,-100.629	0/1:88:41,47:41:1458:47:1675:-124.546,0,-105.024	1/1:234:1,233:1:36:233:8213:-735.591,-66.8427,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:27:0,27:0:0:27:935:-84.4594,-8.12781,0	1/1:93:0,92:0:0:92:3205:-288.315,-27.6948,0	0/1:129:65,64:65:2336:64:2230:-162.129,0,-171.666	1/1:87:0,87:0:0:87:3080:-277.428,-26.1896,0	1/1:97:0,97:0:0:97:3460:-311.613,-29.1999,0	1/1:52:0,52:0:0:52:1812:-163.359,-15.6536,0	0/1:97:57,40:57:2040:40:1369:-94.3017,0,-154.672	0/1:78:41,37:41:1468:37:1312:-94.9013,0,-108.936	1/1:49:0,49:0:0:49:1723:-155.354,-14.7505,0	1/1:62:1,61:1:36:61:2163:-191.338,-15.0656,0	1/1:61:0,61:0:0:61:2136:-192.507,-18.3628,0	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:27:0,27:0:0:27:956:-86.3557,-8.12781,0	1/1:127:0,127:0:0:127:4533:-408.136,-38.2308,0	1/1:204:1,203:1:36:203:7175:-642.215,-57.8118,0	0/1:88:62,26:62:2215:26:915:-56.1749,0,-173.123	1/1:118:0,118:0:0:118:4160:-374.584,-35.5215,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:57:0,57:0:0:57:2029:-182.881,-17.1587,0	0/1:249:141,108:141:5051:108:3833:-270.204,0,-379.778	1/1:181:0,181:0:0:181:6450:-580.589,-54.4864,0	1/1:29:0,29:0:0:29:1019:-92.0213,-8.72987,0	0/1:211:96,115:96:3440:115:4032:-299.553,0,-246.296	1/1:102:0,102:0:0:102:3617:-325.734,-30.7051,0	1/1:99:0,99:0:0:99:3508:-315.934,-29.802,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:212:0,212:0:0:212:7547:-679.276,-63.8184,0	1/1:120:1,119:1:36:119:4210:-375.484,-32.5253,0	0/1:40:22,18:22:792:18:635:-45.4358,0,-59.5645	.:.:.:.:.:.:.:.	0/1:116:50,66:50:1792:66:2331:-175.129,0,-126.643	0/1:30:14,16:14:504:16:553:-41.0618,0,-36.6672	1/1:68:0,68:0:0:68:2403:-216.525,-20.47,0	1/1:68:0,68:0:0:68:2369:-213.467,-20.47,0	1/1:72:0,72:0:0:72:2538:-228.669,-21.6742,0	0/1:82:45,37:45:1605:37:1297:-92.3441,0,-120.054	1/1:94:0,93:0:0:93:3315:-298.209,-27.9958,0	1/1:198:0,198:0:0:198:6974:-627.73,-59.6039,0	1/1:87:0,87:0:0:87:3098:-279.047,-26.1896,0	0/1:99:42,57:42:1508:57:2013:-151.639,0,-106.213	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:70:38,32:38:1360:32:1122:-80.2142,0,-101.628	1/1:55:1,54:1:36:54:1919:-169.388,-12.9584,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:129:52,77:52:1864:77:2726:-206.751,0,-129.207	0/1:31:12,19:12:432:19:667:-51.0227,0,-29.8893	0/1:15:2,13:2:72:13:464:-37.5821,0,-2.32127	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:84:0,84:0:0:84:2990:-269.332,-25.2865,0	0/1:75:42,33:42:1493:33:1153:-81.4969,0,-112.085	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:239:1,237:1:36:237:8369:-749.624,-68.4067,0	1/1:173:3,170:3:108:170:6055:-534.98,-42.003,0	1/1:56:1,55:1:36:55:1945:-171.726,-13.2594,0	1/1:76:0,76:0:0:76:2640:-237.844,-22.8783,0	1/1:154:1,153:1:36:153:5382:-480.915,-42.7603,0	0/1:86:44,42:44:1567:42:1460:-105.802,0,-115.432	1/1:24:1,23:1:36:23:811:-69.7117,-3.62645,0	1/1:37:0,37:0:0:37:1311:-118.291,-11.1381,0	0/1:46:23,23:23:828:23:812:-59.5535,0,-60.9967	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:58:0,58:0:0:58:2054:-185,-17.4597,0	1/1:106:0,106:0:0:106:3736:-336.443,-31.9092,0	1/1:117:3,114:3:108:114:4055:-355.061,-25.1453,0	1/1:133:0,133:0:0:133:4689:-422.171,-40.037,0	0/1:63:29,34:29:1044:34:1179:-87.446,0,-75.3099	0/1:128:71,57:71:2539:57:2022:-143.719,0,-190.229	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:102:2,100:2:72:100:3570:-314.67,-23.8683,0	1/1:107:1,106:1:36:106:3741:-333.293,-28.6119,0	1/1:253:0,253:0:0:253:8950:-805.487,-76.1606,0	1/1:60:0,60:0:0:60:2136:-192.508,-18.0618,0	0/1:88:47,40:47:1688:40:1416:-101.188,0,-125.658	0/1:63:39,24:39:1404:24:843:-57.2231,0,-107.694	0/1:151:78,73:78:2792:73:2579:-186.905,0,-206.065	1/1:36:0,36:0:0:36:1271:-114.692,-10.8371,0	1/1:81:0,81:0:0:81:2862:-257.82,-24.3834,0	1/1:80:0,80:0:0:80:2802:-252.42,-24.0824,0	0/1:26:15,11:15:540:11:384:-27.0673,0,-41.1098	0/1:72:36,36:36:1280:36:1288:-94.5494,0,-93.8291	0/1:93:62,31:62:2211:31:1071:-68.7,0,-171.259	1/1:138:0,138:0:0:138:4856:-437.198,-41.5421,0	1/1:103:0,103:0:0:103:3640:-327.805,-31.0061,0
chr03	18673127	.	ACAGA	TCAGG,GCAGA	186608	PASS	AB=0.47345,0.517643;ABP=20.8827,10.9024;AC=156,32;AF=0.829787,0.170213;AN=188;AO=6798,1520;CIGAR=1X3M1X,1X4M;DP=8391;DPB=8398.2;DPRA=0,1.23232;EPP=13457.4,2981.84;EPPR=5.18177;GTI=0;LEN=5,1;MEANALT=2.10638,2.69231;MQM=59.6633,59.6842;MQMR=60;NS=94;NUMALT=2;ODDS=3.41694;PAIRED=0,0;PAIREDR=0;PAO=0,37;PQA=0,1332;PQR=0;PRO=0;QA=238490,54101;QR=36;RO=1;RPL=6644,1482;RPP=13457.4,2981.84;RPPR=5.18177;RPR=154,38;RUN=1,1;SAF=0,0;SAP=14764.7,3303.65;SAR=6798,1520;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,14,24:0:0:14,24:483,852:-108.588,-69.3518,-65.1374,-39.2561,0,-32.0314	1/2:88:0,49,39:0:0:49,39:1709,1387:-252.368,-113.385,-98.6342,-139.336,0,-127.596	1/2:77:0,25,52:0:0:25,52:873,1864:-223.384,-152.378,-144.852,-71.3587,0,-55.7051	1/1:265:0,260,1:0:0:260,1:9052,36:-814.154,-78.2678,0,-811.217,-75.3228,-810.916	1/1:83:0,83,0:0:0:83,0:2923,0:-263.294,-24.9855,0,-263.294,-24.9855,-263.294	1/1:39:0,39,0:0:0:39,0:1383,0:-124.757,-11.7402,0,-124.757,-11.7402,-124.757	1/1:137:0,135,1:0:0:135,1:4749,32:-427.217,-40.6391,0,-424.639,-38.0806,-424.338	1/2:81:0,29,51:0:0:29,51:980,1819:-227.682,-148.262,-139.533,-79.42,0,-64.0674	1/1:84:0,84,0:0:0:84,0:2928,0:-262.998,-25.2865,0,-262.998,-25.2865,-262.998	1/1:82:0,82,0:0:0:82,0:2883,0:-259.656,-24.6845,0,-259.656,-24.6845,-259.656	1/1:75:0,75,0:0:0:75,0:2616,0:-235.687,-22.5773,0,-235.687,-22.5773,-235.687	1/2:65:0,38,27:0:0:38,27:1332,968:-187.471,-79.2033,-67.7642,-108.623,0,-100.495	1/2:74:0,43,31:0:0:43,31:1511,1097:-212.6,-89.7052,-76.7609,-123.247,0,-113.915	1/1:84:0,84,0:0:0:84,0:2946,0:-265.344,-25.2865,0,-265.344,-25.2865,-265.344	1/1:57:0,56,0:0:0:56,0:1967,0:-176.939,-16.8577,0,-176.939,-16.8577,-176.939	1/1:52:0,51,0:0:0:51,0:1775,0:-159.67,-15.3525,0,-159.67,-15.3525,-159.67	1/1:73:0,72,0:0:0:72,0:2527,0:-227.308,-21.6742,0,-227.308,-21.6742,-227.308	1/1:66:0,65,0:0:0:65,0:2309,0:-207.713,-19.567,0,-207.713,-19.567,-207.713	1/1:53:0,53,0:0:0:53,0:1869,0:-168.488,-15.9546,0,-168.488,-15.9546,-168.488	1/1:106:0,106,0:0:0:106,0:3721,0:-335.079,-31.9092,0,-335.079,-31.9092,-335.079	1/1:136:0,135,0:0:0:135,0:4717,0:-424.304,-40.6391,0,-424.304,-40.6391,-424.304	1/2:48:0,19,29:0:0:19,29:672,1040:-139.559,-84.8271,-79.1075,-54.7302,0,-46.0003	1/1:105:0,103,1:0:0:103,1:3635,36:-326.99,-31.0061,0,-324.053,-28.0685,-323.752	1/1:38:0,37,0:0:0:37,0:1281,0:-115.216,-11.1381,0,-115.216,-11.1381,-115.216	1/1:37:0,37,0:0:0:37,0:1279,0:-115.408,-11.1381,0,-115.408,-11.1381,-115.408	1/2:288:0,156,130:0:0:156,130:5514,4632:-826.554,-377.511,-330.551,-449.039,0,-409.905	1/1:200:0,200,0:0:0:200,0:6996,0:-629.573,-60.206,0,-629.573,-60.206,-629.573	1/1:28:0,25,0:0:0:25,0:884,0:-79.5295,-7.52575,0,-79.5295,-7.52575,-79.5295	1/2:418:0,199,215:0:0:199,215:7035,7663:-1197.55,-624.601,-564.696,-572.978,0,-508.256	1/1:114:0,112,2:0:0:112,2:3933,72:-353.751,-33.7154,0,-347.881,-27.4855,-347.279	1/1:90:0,89,0:0:0:89,0:3127,0:-281.289,-26.7917,0,-281.289,-26.7917,-281.289	1/2:18:0,13,5:0:0:13,5:461,171:-51.7796,-14.2203,-10.3069,-37.9047,0,-36.3995	1/1:16:0,16,0:0:0:16,0:561,0:-50.8133,-4.81648,0,-50.8133,-4.81648,-50.8133	1/1:5:0,5,0:0:0:5,0:177,0:-16.277,-1.50515,0,-16.277,-1.50515,-16.277	1/1:17:0,17,0:0:0:17,0:601,0:-54.4048,-5.11751,0,-54.4048,-5.11751,-54.4048	1/2:9:0,6,3:0:0:6,3:207,108:-25.9775,-9.17208,-7.3659,-17.1602,0,-16.2572	1/1:227:0,223,0:0:0:223,0:7865,0:-707.528,-67.1297,0,-707.528,-67.1297,-707.528	1/1:148:0,147,1:0:0:147,1:5162,36:-464.341,-44.2514,0,-461.404,-40.9542,-461.103	1/2:77:0,45,31:0:0:45,31:1594,1095:-219.156,-89.3109,-75.7645,-129.992,0,-120.661	1/1:8:0,8,0:0:0:8,0:283,0:-25.8122,-2.40824,0,-25.8122,-2.40824,-25.8122	1/2:245:0,124,116:0:0:124,116:4310,4145:-688.328,-337.979,-300.651,-350.388,0,-315.468	1/2:38:0,14,24:0:0:14,24:492,849:-109.538,-69.4937,-65.2793,-40.3965,0,-33.1718	1/1:82:0,82,0:0:0:82,0:2829,0:-254.844,-24.6845,0,-254.844,-24.6845,-254.844	1/1:83:0,81,0:0:0:81,0:2869,0:-258.194,-24.3834,0,-258.194,-24.3834,-258.194	1/1:99:0,96,0:0:0:96,0:3382,0:-304.233,-28.8989,0,-304.233,-28.8989,-304.233	1/2:74:0,32,41:0:0:32,41:1106,1459:-208.753,-118.891,-109.258,-89.8548,0,-77.5126	1/1:103:0,103,0:0:0:103,0:3611,0:-325.176,-31.0061,0,-325.176,-31.0061,-325.176	1/1:157:0,154,0:0:0:154,0:5358,0:-482.016,-46.3586,0,-482.016,-46.3586,-482.016	1/1:121:0,120,0:0:0:120,0:4226,0:-380.152,-36.1236,0,-380.152,-36.1236,-380.152	1/2:102:0,40,61:0:0:40,61:1374,2175:-288.844,-177.283,-165.242,-111.55,0,-93.1876	1/1:134:0,133,0:0:0:133,0:4685,0:-421.437,-40.037,0,-421.437,-40.037,-421.437	1/1:8:0,8,0:0:0:8,0:288,0:-26.267,-2.40824,0,-26.267,-2.40824,-26.267	1/2:74:0,38,35:0:0:38,35:1343,1247:-210.914,-101.64,-90.2005,-109.271,0,-98.7351	1/1:37:0,37,0:0:0:37,0:1309,0:-118.108,-11.1381,0,-118.108,-11.1381,-118.108	1/1:18:0,18,0:0:0:18,0:635,0:-57.4693,-5.41854,0,-57.4693,-5.41854,-57.4693	1/2:146:0,56,86:0:0:56,86:1951,3046:-406.71,-248.064,-231.206,-158.644,0,-132.756	1/2:30:0,19,11:0:0:19,11:675,392:-86.9879,-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chr03	18673135	.	T	A	26469.8	PASS	AB=0.523497;ABP=16.8885;AC=32;AF=0.170213;AN=188;AO=1526;CIGAR=1X;DP=8283;DPB=8283;DPRA=1.24039;EPP=3213.27;EPPR=14289.3;GTI=0;LEN=1;MEANALT=1.07317;MQM=59.6429;MQMR=59.6249;NS=94;NUMALT=1;ODDS=2.98517;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54559;QR=241667;RO=6750;RPL=1514;RPP=3213.27;RPPR=14289.3;RPR=12;RUN=1;SAF=0;SAP=3316.68;SAR=1526;SRF=0;SRP=14660.4;SRR=6750;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:17,26:17:600:26:924:-70.3329,0,-40.435	0/1:86:47,39:47:1680:39:1385:-99.0549,0,-125.59	0/1:78:25,53:25:885:53:1904:-148.149,0,-56.478	0/0:261:259,1:259:9253:1:36:0,-75.0292,-828.452	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.741	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.34	0/0:133:132,1:132:4740:1:36:0,-36.4387,-423.013	0/1:82:30,52:30:1072:52:1860:-142.966,0,-71.9177	0/0:84:84,0:84:3012:0:0:0,-25.2865,-270.681	0/0:80:80,0:80:2857:0:0:0,-24.0824,-257.257	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.326	0/1:65:38,27:38:1360:27:972:-68.1247,0,-103.011	0/1:74:43,31:43:1532:31:1116:-78.4746,0,-115.806	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.443	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.348	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.031	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.022	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.491	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.936	0/0:134:133,0:133:4753:0:0:0,-40.037,-427.5	0/1:46:18,28:18:644:28:1008:-77.189,0,-44.4432	0/0:104:103,1:103:3681:1:36:0,-27.7088,-327.881	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.562	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.939	0/1:287:156,131:156:5604:131:4658:-332.804,0,-418.021	0/0:191:191,0:191:6841:0:0:0,-57.4967,-615.605	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.8157	0/1:409:201,208:201:7188:208:7453:-547.633,0,-523.248	0/0:110:108,2:108:3872:2:72:0,-26.2814,-341.423	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.252	0/1:18:13,5:13:468:5:180:-11.1331,0,-37.0318	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.686	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0356	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7128	0/0:225:225,0:225:8080:0:0:0,-67.7317,-727.197	0/0:143:142,1:142:5073:1:36:0,-39.449,-453.079	0/1:77:45,32:45:1620:32:1135:-79.2591,0,-122.902	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:244:122,120:122:4349:120:4286:-312.673,0,-318.209	0/1:38:14,24:14:504:24:860:-66.2689,0,-34.2543	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.7	0/0:79:79,0:79:2836:0:0:0,-23.7814,-254.716	0/0:99:99,0:99:3536:0:0:0,-29.802,-318.423	0/1:71:29,42:29:1040:42:1497:-113.628,0,-72.5412	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.853	0/0:157:157,0:157:5605:0:0:0,-47.2617,-504.547	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.401	0/1:97:39,58:39:1396:58:2080:-158.254,0,-96.7368	0/0:132:132,0:132:4720:0:0:0,-39.736,-424.845	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.267	0/1:75:39,36:39:1388:36:1292:-94.0061,0,-102.527	0/0:37:37,0:37:1305:0:0:0,-11.1381,-117.747	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6437	0/1:141:56,85:56:2004:85:3039:-231.217,0,-138.172	0/1:32:19,13:19:684:13:468:-32.808,0,-52.2574	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:34:34,0:34:1216:0:0:0,-10.235,-108.468	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.842	0/1:128:61,67:61:2184:67:2385:-176.362,0,-158.276	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5035	0/0:207:206,0:206:7381:0:0:0,-62.0122,-663.453	0/0:161:161,0:161:5772:0:0:0,-48.4658,-519.538	0/0:68:66,2:66:2353:2:72:0,-13.6333,-205.177	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.731	0/0:155:154,1:154:5483:1:36:0,-43.0614,-489.959	0/1:68:14,54:14:500:54:1936:-154.038,0,-24.8579	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4787	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.409	0/1:58:28,30:28:1000:30:1067:-78.8733,0,-72.8547	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8564	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.241	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.438	0/0:120:119,1:119:4260:1:36:0,-32.5304,-379.62	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.958	0/1:83:31,52:31:1116:52:1860:-142.686,0,-75.5596	0/1:73:43,30:43:1540:30:1057:-73.4552,0,-116.874	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.353	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.616	0/0:275:275,0:275:9860:0:0:0,-82.7832,-887.226	0/0:127:127,0:127:4568:0:0:0,-38.2308,-411.17	0/1:60:27,33:27:968:33:1180:-88.4401,0,-69.3732	0/1:76:42,34:42:1493:34:1212:-86.5019,0,-111.771	0/1:154:91,62:91:3264:62:2232:-154.708,0,-247.555	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.589	0/0:73:73,0:73:2620:0:0:0,-21.9752,-235.615	0/0:78:77,0:77:2760:0:0:0,-23.1793,-248.203	0/1:33:14,19:14:504:19:669:-50.5953,0,-35.629	0/1:104:42,62:42:1504:62:2216:-168.391,0,-104.344	0/1:67:20,47:20:712:47:1692:-132.392,0,-44.2329	0/0:68:67,1:67:2404:1:36:0,-16.8744,-212.994	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.278
chr03	18875297	.	A	G	17405.3	PASS	AB=0.499281;ABP=3.01966;AC=32;AF=0.172043;AN=186;AO=1044;CIGAR=1X;DP=6467;DPB=6467;DPRA=0.964284;EPP=2270.03;EPPR=11778.9;GTI=0;LEN=1;MEANALT=1;MQM=59.5872;MQMR=59.4604;NS=93;NUMALT=1;ODDS=0.0923977;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37339;QR=193520;RO=5423;RPL=0;RPP=2270.03;RPPR=11778.9;RPR=1044;RUN=1;SAF=1044;SAP=2270.03;SAR=0;SRF=5423;SRP=11778.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.016	0/1:111:53,58:53:1904:58:2054:-151.527,0,-138.212	0/1:59:28,31:28:985:31:1112:-82.6306,0,-71.1748	0/0:144:144,0:144:5153:0:0:0,-43.3483,-463.322	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.3303	0/0:111:111,0:111:3957:0:0:0,-33.4143,-356.258	0/1:94:47,47:47:1680:47:1663:-121.639,0,-123.138	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.086	0/0:89:89,0:89:3172:0:0:0,-26.7917,-285.519	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.804	0/1:37:21,16:21:733:16:576:-41.0369,0,-55.1506	0/1:31:17,14:17:612:14:504:-36.3662,0,-46.0733	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.237	0/0:47:47,0:47:1668:0:0:0,-14.1484,-150.395	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.775	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.811	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.52	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0408	0/0:104:104,0:104:3713:0:0:0,-31.3071,-334.358	0/0:116:116,0:116:4145:0:0:0,-34.9195,-373.205	0/1:41:17,24:17:604:24:864:-65.7322,0,-42.3369	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2686	0/0:102:102,0:102:3626:0:0:0,-30.7051,-326.517	0/0:26:26,0:26:902:0:0:0,-7.82678,-81.4903	0/1:192:95,97:95:3378:97:3448:-252.672,0,-246.414	0/0:154:154,0:154:5489:0:0:0,-46.3586,-494.095	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:227:123,104:123:4374:104:3728:-267.358,0,-324.341	0/0:163:163,0:163:5829:0:0:0,-49.0679,-524.699	0/0:159:159,0:159:5668:0:0:0,-47.8638,-509.844	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2166	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7269	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:152:152,0:152:5445:0:0:0,-45.7566,-490.117	0/0:114:114,0:114:4046:0:0:0,-34.3174,-364.276	0/1:36:19,17:19:684:17:612:-44.5745,0,-50.9833	.:.:.:.:.:.:.:.	0/1:182:80,102:80:2876:102:3656:-274.434,0,-204.149	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.8324	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.889	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.797	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.62	0/1:17:8,9:8:288:9:324:-24.3719,0,-21.136	0/0:57:57,0:57:2013:0:0:0,-17.1587,-181.413	0/0:150:150,0:150:5298:0:0:0,-45.1545,-476.909	0/0:92:92,0:92:3278:0:0:0,-27.6948,-295.231	0/1:130:57,73:57:2024:73:2599:-195.009,0,-143.298	0/0:123:123,0:123:4393:0:0:0,-37.0267,-395.523	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:75:38,37:38:1368:37:1324:-96.8749,0,-100.827	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0735	0/1:99:59,40:59:2108:40:1440:-100.03,0,-159.386	0/1:21:14,7:14:485:7:245:-16.0534,0,-37.6553	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.887	0/0:56:56,0:56:1997:0:0:0,-16.8577,-179.987	0/1:69:37,32:37:1324:32:1148:-82.8481,0,-98.6725	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:151:151,0:151:5380:0:0:0,-45.4555,-483.844	0/0:184:184,0:184:6574:0:0:0,-55.3895,-590.986	0/0:74:74,0:74:2625:0:0:0,-22.2762,-236.436	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.255	0/0:59:59,0:59:2082:0:0:0,-17.7608,-186.749	0/1:71:25,46:25:885:46:1652:-127.578,0,-58.5872	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2628	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:80:39,41:39:1377:41:1476:-109.046,0,-100.134	0/0:24:23,1:23:820:1:36:0,-3.62644,-70.5174	0/0:102:102,0:102:3648:0:0:0,-30.7051,-328.446	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.819	0/0:189:189,0:189:6726:0:0:0,-56.8947,-605.059	0/0:199:198,1:198:7040:1:36:0,-56.3135,-629.869	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/1:123:49,74:49:1756:74:2648:-201.523,0,-121.277	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.2926	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.554	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.502	0/0:124:124,0:124:4452:0:0:0,-37.3277,-399.958	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.468	0/1:36:22,14:22:792:14:504:-34.861,0,-60.7562	0/1:70:38,32:38:1360:32:1152:-82.9072,0,-101.614	0/1:84:51,33:51:1828:33:1184:-81.5756,0,-139.478	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.365	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.454	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.768	0/1:12:4,8:4:144:8:288:-22.6504,0,-9.70126	0/1:56:34,22:34:1224:22:777:-53.3917,0,-93.5917	0/1:39:22,17:22:769:17:597:-42.3097,0,-57.7798	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.787	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.056
chr03	18875300	.	T	G	118949	PASS	AB=0.504077;ABP=3.31129;AC=154;AF=0.827957;AN=186;AO=5441;CIGAR=1X;DP=6478;DPB=6478;DPRA=0;EPP=11818;EPPR=2248.31;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.4549;MQMR=59.6238;NS=93;NUMALT=1;ODDS=0.361648;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194234;QR=37028;RO=1034;RPL=0;RPP=11818;RPPR=2248.31;RPR=5441;RUN=1;SAF=5441;SAP=11818;SAR=0;SRF=1034;SRP=2248.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:6,9:6:216:9:320:-24.5891,0,-15.2751	0/1:112:58,54:58:2069:54:1944:-141.509,0,-152.484	0/1:59:31,28:31:1116:28:982:-70.9103,0,-82.9909	1/1:144:0,144:0:0:144:5130:-461.623,-43.3483,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:19:0,19:0:0:19:684:-61.6914,-5.71957,0	1/1:112:0,112:0:0:112:4009:-360.936,-33.7154,0	0/1:93:46,47:46:1656:47:1669:-122.447,0,-121.302	1/1:54:0,54:0:0:54:1895:-170.797,-16.2556,0	1/1:90:0,90:0:0:90:3180:-286.39,-27.0927,0	1/1:37:0,37:0:0:37:1313:-118.451,-11.1381,0	0/1:36:15,21:15:540:21:726:-54.818,0,-38.0995	0/1:31:14,17:14:500:17:612:-46.0733,0,-36.0042	1/1:45:0,45:0:0:45:1605:-144.688,-13.5464,0	1/1:48:1,47:1:36:47:1673:-147.251,-10.8512,0	1/1:46:0,46:0:0:46:1637:-147.531,-13.8474,0	1/1:58:0,58:0:0:58:2084:-187.811,-17.4597,0	1/1:41:0,41:0:0:41:1461:-131.768,-12.3422,0	1/1:24:0,24:0:0:24:860:-77.6849,-7.22472,0	1/1:105:0,105:0:0:105:3772:-339.663,-31.6082,0	1/1:117:0,117:0:0:117:4163:-374.798,-35.2205,0	0/1:40:24,16:24:864:16:576:-40.1256,0,-66.0332	1/1:30:0,30:0:0:30:1069:-96.514,-9.0309,0	1/1:103:0,103:0:0:103:3677:-331.08,-31.0061,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:194:95,98:95:3401:98:3483:-255.206,0,-247.785	1/1:154:0,154:0:0:154:5460:-491.485,-46.3586,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:227:104,123:104:3740:123:4388:-326.086,0,-268.436	1/1:163:0,163:0:0:163:5828:-524.608,-49.0679,0	1/1:160:0,160:0:0:160:5702:-512.693,-48.1648,0	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:12:0,12:0:0:12:428:-38.8542,-3.61236,0	1/1:10:0,10:0:0:10:345:-31.3634,-3.0103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	1/1:153:0,153:0:0:153:5455:-491.032,-46.0576,0	1/1:114:0,114:0:0:114:4092:-368.413,-34.3174,0	0/1:35:16,19:16:576:19:684:-51.2843,0,-41.6371	.:.:.:.:.:.:.:.	0/1:185:102,82:102:3649:82:2934:-208.4,0,-272.846	0/1:23:10,13:10:360:13:460:-34.8071,0,-25.8206	1/1:60:0,60:0:0:60:2156:-194.252,-18.0618,0	1/1:36:0,36:0:0:36:1281:-115.567,-10.8371,0	1/1:42:0,42:0:0:42:1508:-135.98,-12.6433,0	0/1:18:10,8:10:341:8:288:-20.835,0,-25.5907	1/1:56:0,56:0:0:56:2016:-181.685,-16.8577,0	1/1:150:1,149:1:36:149:5314:-474.756,-41.5562,0	1/1:95:0,95:0:0:95:3390:-305.3,-28.5979,0	0/1:128:70,58:70:2508:58:2048:-146.054,0,-187.428	1/1:127:0,127:0:0:127:4500:-405.165,-38.2308,0	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	0/1:75:37,38:37:1332:38:1368:-100.827,0,-97.5952	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	1/1:24:0,24:0:0:24:864:-78.0735,-7.22472,0	0/1:98:39,59:39:1385:59:2098:-159.248,0,-95.4348	0/1:21:6,14:6:216:14:481:-37.3025,0,-13.4714	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:19:0,19:0:0:19:676:-61.1646,-5.71957,0	1/1:57:0,57:0:0:57:2037:-183.586,-17.1587,0	0/1:68:31,37:31:1112:37:1317:-98.3472,0,-79.9107	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:153:0,153:0:0:153:5455:-490.58,-46.0576,0	1/1:184:0,184:0:0:184:6558:-589.647,-55.3895,0	1/1:74:0,74:0:0:74:2664:-239.901,-22.2762,0	1/1:53:0,53:0:0:53:1878:-169.278,-15.9546,0	1/1:59:0,59:0:0:59:2120:-190.161,-17.7608,0	0/1:71:46,25:46:1625:25:900:-59.9417,0,-125.146	1/1:9:0,9:0:0:9:324:-29.5012,-2.70927,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:79:40,39:40:1440:39:1392:-101.783,0,-106.108	1/1:24:1,23:1:36:23:828:-71.2381,-3.62645,0	1/1:102:0,102:0:0:102:3645:-328.179,-30.7051,0	1/1:59:0,59:0:0:59:2105:-189.505,-17.7608,0	1/1:189:0,189:0:0:189:6777:-609.797,-56.8947,0	1/1:200:0,200:0:0:200:7162:-644.498,-60.206,0	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:122:74,48:74:2634:48:1705:-116.996,0,-200.561	0/1:18:10,8:10:360:8:288:-20.6566,0,-27.3258	1/1:90:0,90:0:0:90:3240:-291.8,-27.0927,0	1/1:110:0,110:0:0:110:3926:-353.458,-33.1133,0	1/1:124:0,124:0:0:124:4406:-396.587,-37.3277,0	1/1:78:0,78:0:0:78:2788:-250.878,-23.4803,0	0/1:37:14,23:14:504:23:828:-63.6936,0,-34.56	0/1:69:32,37:32:1152:37:1328:-99.0368,0,-83.2083	0/1:85:33,52:33:1184:52:1868:-142.779,0,-81.2583	1/1:31:0,31:0:0:31:1116:-100.725,-9.33193,0	1/1:44:0,44:0:0:44:1569:-140.904,-13.2453,0	1/1:56:0,56:0:0:56:2016:-181.664,-16.8577,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.6504	0/1:54:21,33:21:752:33:1188:-90.9554,0,-51.7497	0/1:38:16,22:16:576:22:773:-58.4379,0,-40.7296	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:74:0,74:0:0:74:2663:-239.91,-22.2762,0
chr03	18955141	.	GCAG	TCAG,TCAT	140667	PASS	AB=0.511554,0.485274;ABP=5.56943,7.16729;AC=156,32;AF=0.829787,0.170213;AN=188;AO=5311,1081;CIGAR=1X3M,1X2M1X;DP=6413;DPB=6413;DPRA=68.9462,1.13678;EPP=11535.7,2350.37;EPPR=5.18177;GTI=1;LEN=1,4;MEANALT=1.56989,2.11111;MQM=59.9166,59.5763;MQMR=60;NS=94;NUMALT=2;ODDS=2.04279;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=190024,38460;QR=36;RO=1;RPL=0,0;RPP=11535.7,2350.37;RPPR=5.18177;RPR=5311,1081;RUN=1,1;SAF=5311,1081;SAP=11535.7,2350.37;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:56:0,35,21:0:0:35,21:1252,738:-162.515,-60.4192,-49.8832,-102.449,0,-96.1274	1/2:38:0,22,16:0:0:22,16:788,568:-110.871,-46.6051,-39.9824,-64.6221,0,-59.8057	1/2:84:0,48,36:0:0:48,36:1718,1276:-244.389,-104.289,-89.8392,-140.456,0,-129.619	1/1:171:0,170,0:0:0:170,0:6080,0:-546.926,-51.1751,0,-546.926,-51.1751,-546.926	1/1:31:0,31,0:0:0:31,0:1108,0:-100.031,-9.33193,0,-100.031,-9.33193,-100.031	1/1:36:0,36,0:0:0:36,0:1280,0:-115.503,-10.8371,0,-115.503,-10.8371,-115.503	1/1:56:0,56,0:0:0:56,0:1971,0:-177.663,-16.8577,0,-177.663,-16.8577,-177.663	1/2:102:0,62,39:0:0:62,39:2202,1386:-292.456,-113.031,-94.3667,-179.529,0,-167.789	1/1:78:0,77,0:0:0:77,0:2760,0:-248.41,-23.1793,0,-248.41,-23.1793,-248.41	1/1:54:0,54,0:0:0:54,0:1932,0:-174.154,-16.2556,0,-174.154,-16.2556,-174.154	1/1:68:0,68,0:0:0:68,0:2444,0:-220.215,-20.47,0,-220.215,-20.47,-220.215	1/2:106:0,48,58:0:0:48,58:1728,2059:-309.079,-168.087,-153.638,-141.349,0,-123.889	1/2:83:0,42,41:0:0:42,41:1508,1467:-242.966,-119.953,-107.31,-123.371,0,-111.029	1/1:72:0,72,0:0:0:72,0:2567,0:-231.28,-21.6742,0,-231.28,-21.6742,-231.28	1/1:61:0,61,0:0:0:61,0:2168,0:-195.339,-18.3628,0,-195.339,-18.3628,-195.339	1/1:63:0,62,0:0:0:62,0:2228,0:-200.439,-18.6639,0,-200.439,-18.6639,-200.439	1/1:45:0,45,0:0:0:45,0:1616,0:-145.73,-13.5464,0,-145.73,-13.5464,-145.73	1/1:33:0,33,0:0:0:33,0:1188,0:-107.226,-9.93399,0,-107.226,-9.93399,-107.226	1/1:26:0,24,0:0:0:24,0:860,0:-77.3589,-7.22472,0,-77.3589,-7.22472,-77.3589	1/1:93:0,92,0:0:0:92,0:3285,0:-295.509,-27.6948,0,-295.509,-27.6948,-295.509	1/1:93:0,92,1:0:0:92,1:3300,36:-296.859,-27.6948,0,-293.921,-24.3975,-293.62	1/2:58:0,25,30:0:0:25,30:900,1059:-159.674,-86.236,-78.7102,-73.4414,0,-64.4105	1/1:75:0,75,0:0:0:75,0:2696,0:-242.873,-22.5773,0,-242.873,-22.5773,-242.873	1/1:44:0,44,0:0:0:44,0:1572,0:-141.767,-13.2453,0,-141.767,-13.2453,-141.767	1/1:45:0,45,0:0:0:45,0:1612,0:-145.37,-13.5464,0,-145.37,-13.5464,-145.37	1/2:187:0,110,77:0:0:110,77:3928,2742:-544.064,-223.836,-190.723,-320.584,0,-297.405	1/1:148:0,148,0:0:0:148,0:5312,0:-478.213,-44.5524,0,-478.213,-44.5524,-478.213	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0325,-8.42884,0,-91.0325,-8.42884,-91.0325	1/2:117:0,68,49:0:0:68,49:2424,1749:-340.521,-142.941,-122.471,-197.936,0,-183.186	1/1:82:0,81,1:0:0:81,1:2872,36:-258.085,-24.3834,0,-255.148,-21.0862,-254.847	1/1:98:0,97,0:0:0:97,0:3448,0:-310.175,-29.1999,0,-310.175,-29.1999,-310.175	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:207:0,206,0:0:0:206,0:7373,0:-663.257,-62.0122,0,-663.257,-62.0122,-663.257	1/1:108:0,107,0:0:0:107,0:3840,0:-345.399,-32.2102,0,-345.399,-32.2102,-345.399	1/2:39:0,12,27:0:0:12,27:428,948:-112.389,-77.4969,-73.8845,-35.2464,0,-27.1186	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:98:0,59,39:0:0:59,39:2105,1385:-284.718,-113.173,-95.4118,-171.901,0,-160.16	1/2:18:0,9,9:0:0:9,9:324,324:-53.2287,-26.7919,-24.0827,-26.7966,0,-24.0873	1/1:78:0,77,1:0:0:77,1:2756,36:-247.922,-23.1793,0,-244.985,-19.8821,-244.684	1/1:59:0,59,0:0:0:59,0:2120,0:-191.04,-17.7608,0,-191.04,-17.7608,-191.04	1/1:70:0,70,0:0:0:70,0:2512,0:-226.332,-21.0721,0,-226.332,-21.0721,-226.332	1/2:54:0,25,29:0:0:25,29:896,1031:-157.45,-84.372,-76.8462,-73.4346,0,-64.7047	1/1:73:0,73,0:0:0:73,0:2612,0:-235.319,-21.9752,0,-235.319,-21.9752,-235.319	1/1:152:0,150,0:0:0:150,0:5368,0:-482.9,-45.1545,0,-482.9,-45.1545,-482.9	1/1:51:0,51,0:0:0:51,0:1830,0:-164.71,-15.3525,0,-164.71,-15.3525,-164.71	1/2:81:0,47,34:0:0:47,34:1684,1214:-236.044,-98.7015,-84.5531,-137.699,0,-127.464	1/1:26:0,26,0:0:0:26,0:909,0:-82.1234,-7.82678,0,-82.1234,-7.82678,-82.1234	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:81:0,49,32:0:0:49,32:1764,1138:-237.022,-93.0855,-78.3351,-144.293,0,-134.66	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/1:20:0,19,0:0:0:19,0:665,0:-59.8135,-5.71957,0,-59.8135,-5.71957,-59.8135	1/2:91:0,67,24:0:0:67,24:2378,855:-263.791,-70.0415,-49.8725,-194.106,0,-186.881	1/2:42:0,17,25:0:0:17,25:608,876:-121.124,-71.5442,-66.4267,-49.9345,0,-42.4088	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29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chr03	18955151	.	T	C	113154	PASS	AB=0.522072;ABP=12.4044;AC=155;AF=0.833333;AN=186;AO=5238;CIGAR=1X;DP=6309;DPB=6309;DPRA=0;EPP=11377.2;EPPR=2319.97;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9108;MQMR=59.6054;NS=93;NUMALT=1;ODDS=3.27166;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186244;QR=38264;RO=1067;RPL=0;RPP=11377.2;RPPR=2319.97;RPR=5238;RUN=1;SAF=5238;SAP=11377.2;SAR=0;SRF=1067;SRP=2319.97;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:20,35:20:716:35:1238:-95.1662,0,-48.2078	0/1:35:15,20:15:540:20:720:-54.5927,0,-38.3703	0/1:82:34,47:34:1220:47:1672:-126.063,0,-85.386	1/1:168:0,168:0:0:168:5949:-535.514,-50.573,0	1/1:30:0,30:0:0:30:1064:-96.0713,-9.0309,0	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:99:41,58:41:1457:58:2048:-154.789,0,-101.515	1/1:78:0,78:0:0:78:2749:-247.644,-23.4803,0	1/1:54:0,54:0:0:54:1924:-173.435,-16.2556,0	1/1:68:0,68:0:0:68:2400:-216.254,-20.47,0	0/1:106:57,49:57:2052:49:1740:-124.972,0,-153.006	0/1:81:41,40:41:1467:40:1432:-104.794,0,-107.916	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:61:0,61:0:0:61:2175:-195.969,-18.3628,0	1/1:62:0,62:0:0:62:2208:-198.982,-18.6639,0	1/1:44:0,44:0:0:44:1538:-138.71,-13.2453,0	1/1:33:0,33:0:0:33:1179:-106.415,-9.93399,0	1/1:26:0,26:0:0:26:908:-82.0328,-7.82678,0	1/1:89:0,89:0:0:89:3175:-285.974,-26.7917,0	1/1:93:0,93:0:0:93:3297:-296.95,-27.9958,0	0/1:55:29,26:29:1044:26:920:-66.5604,0,-77.7182	1/1:76:1,75:1:36:75:2688:-238.556,-19.28,0	1/1:43:0,43:0:0:43:1515:-136.638,-12.9443,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:185:76,109:76:2728:109:3884:-294.049,0,-190.066	1/1:148:0,148:0:0:148:5253:-472.91,-44.5524,0	1/1:29:0,29:0:0:29:1036:-93.55,-8.72987,0	0/1:113:47,66:47:1688:66:2331:-176.031,0,-118.19	1/1:82:1,81:1:36:81:2896:-256.089,-21.0862,0	1/1:92:0,92:0:0:92:3293:-296.587,-27.6948,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:8:0,8:0:0:8:277:-25.2651,-2.40824,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:206:0,206:0:0:206:7307:-657.686,-62.0122,0	1/1:105:0,105:0:0:105:3752:-337.845,-31.6082,0	0/1:38:26,12:26:936:12:424:-27.0573,0,-73.1075	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	0/1:93:37,56:37:1328:56:1972:-149.7,0,-91.8203	0/1:18:9,9:9:324:9:322:-23.9057,0,-24.0827	1/1:76:1,75:1:36:75:2658:-235.867,-19.28,0	1/1:58:1,57:1:36:57:2044:-180.605,-13.8615,0	1/1:70:0,70:0:0:70:2500:-225.253,-21.0721,0	0/1:53:29,24:29:1032:24:828:-58.8787,0,-77.2371	1/1:73:0,72:0:0:72:2548:-229.201,-21.6742,0	1/1:146:0,146:0:0:146:5220:-469.938,-43.9504,0	1/1:49:1,48:1:32:48:1712:-150.975,-11.5512,0	0/1:81:34,47:34:1224:47:1684:-127.464,0,-85.4533	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:80:32,48:32:1143:48:1708:-129.923,0,-79.0856	1/1:28:0,28:0:0:28:996:-89.9315,-8.42884,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:89:23,66:23:824:66:2358:-185.687,0,-47.6916	0/1:41:24,17:24:864:17:600:-41.987,0,-65.6539	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:83:0,83:0:0:83:2963:-266.903,-24.9855,0	0/1:80:42,38:42:1512:38:1360:-98.6135,0,-112.283	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:139:0,139:0:0:139:4951:-445.741,-41.8432,0	1/1:128:0,128:0:0:128:4559:-410.478,-38.5318,0	0/1:53:5,48:5:180:48:1716:-138.771,0,-0.597475	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:65:0,65:0:0:65:2312:-208.338,-19.567,0	0/1:56:43,13:43:1544:13:460:-24.8777,0,-122.307	1/1:37:0,37:0:0:37:1307:-117.931,-11.1381,0	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:39:28,11:28:1008:11:388:-23.5172,0,-79.2953	1/1:26:0,26:0:0:26:915:-82.6452,-7.82678,0	1/1:178:1,177:1:36:177:6304:-563.806,-49.9851,0	1/1:108:0,108:0:0:108:3833:-345.145,-32.5112,0	1/1:131:0,131:0:0:131:4688:-422.081,-39.4349,0	1/1:76:0,76:0:0:76:2697:-242.975,-22.8783,0	0/1:107:63,43:63:2252:43:1520:-104.822,0,-170.571	0/1:45:19,26:19:684:26:932:-70.6443,0,-48.344	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:42:0,42:0:0:42:1508:-136.001,-12.6433,0	1/1:72:0,72:0:0:72:2542:-228.659,-21.6742,0	1/1:148:1,147:1:36:147:5251:-469.129,-40.9542,0	1/1:63:1,62:1:36:62:2216:-196.106,-15.3666,0	0/1:82:45,37:45:1612:37:1324:-94.7776,0,-120.686	0/1:36:13,23:13:464:23:824:-63.6462,0,-31.2604	0/1:128:70,58:70:2516:58:2068:-147.859,0,-188.143	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	1/1:74:0,74:0:0:74:2598:-234.067,-22.2762,0	1/1:88:0,88:0:0:88:3136:-282.434,-26.4906,0	0/1:51:26,24:26:936:24:864:-62.6712,0,-69.1197	0/1:134:63,71:63:2246:71:2488:-183.83,0,-162.053	0/1:93:62,31:62:2223:31:1062:-67.8866,0,-172.333	1/1:41:0,41:0:0:41:1450:-130.796,-12.3422,0	1/1:95:1,94:1:36:94:3333:-296.59,-24.9996,0
chr03	18955180	.	G	T	17311	PASS	AB=0.483633;ABP=8.05705;AC=32;AF=0.170213;AN=188;AO=1062;CIGAR=1X;DP=6327;DPB=6327;DPRA=1.14763;EPP=2309.11;EPPR=11418.4;GTI=1;LEN=1;MEANALT=1;MQM=59.5819;MQMR=59.928;NS=94;NUMALT=1;ODDS=1.6235;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37935;QR=188091;RO=5265;RPL=1062;RPP=2309.11;RPPR=11409.8;RPR=0;RUN=1;SAF=1062;SAP=2309.11;SAR=0;SRF=5264;SRP=11427.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:33,21:33:1180:21:740:-50.6649,0,-90.2524	0/1:38:22,16:22:792:16:572:-40.3441,0,-60.1665	0/1:84:48,36:48:1728:36:1261:-88.4842,0,-130.519	0/0:170:170,0:170:6087:0:0:0,-51.1751,-547.91	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:36:34,2:34:1205:2:72:0,-4.00036,-101.917	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:99:60,39:60:2110:39:1389:-95.4924,0,-160.363	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.622	0/0:54:54,0:54:1895:0:0:0,-16.2556,-170.82	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:104:48,56:48:1712:56:1988:-147.858,0,-123.054	0/1:84:43,41:43:1548:41:1459:-106.286,0,-114.327	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.5	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.256	0/0:61:61,0:61:2157:0:0:0,-18.3628,-194.396	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.547	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8301	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:93:93,0:93:3321:0:0:0,-27.9958,-299.107	0/1:59:29,30:29:1040:30:1068:-78.6709,0,-76.1536	0/0:73:73,0:73:2609:0:0:0,-21.9752,-235.046	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.487	0/0:45:45,0:45:1592:0:0:0,-13.5463,-143.568	0/1:184:109,75:109:3875:75:2691:-187.038,0,-293.538	0/0:146:146,0:146:5225:0:0:0,-43.9504,-470.386	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5591	0/1:115:68,47:68:2427:47:1688:-117.586,0,-184.065	0/0:78:77,1:77:2755:1:36:0,-19.8821,-244.593	0/0:96:96,0:96:3421:0:0:0,-28.8989,-308.1	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:204:204,0:204:7276:0:0:0,-61.4101,-654.893	0/0:105:105,0:105:3757:0:0:0,-31.6081,-338.306	0/1:37:12,25:12:424:25:883:-68.6437,0,-27.3583	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:93:55,38:55:1976:38:1368:-95.2882,0,-150.063	0/1:18:9,9:9:324:9:324:-24.0827,0,-24.0873	0/0:77:76,1:76:2715:1:36:0,-19.581,-240.995	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.363	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:52:24,28:24:852:28:999:-74.5691,0,-61.3468	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.751	0/0:148:147,1:147:5276:1:36:0,-40.9542,-471.33	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:81:47,34:47:1688:34:1224:-85.4533,0,-127.824	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8446	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:81:49,32:49:1756:32:1148:-79.2358,0,-133.941	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1701	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:86:64,22:64:2296:22:792:-45.7171,0,-181.013	0/1:40:16,24:16:568:24:851:-64.7818,0,-39.4107	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:80:36,44:36:1270:44:1572:-117.675,0,-90.5189	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:134:134,0:134:4797:0:0:0,-40.338,-431.883	0/0:129:129,0:129:4624:0:0:0,-38.8329,-416.323	0/0:55:50,5:50:1796:5:180:0,-0.00458458,-145.369	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:57:13,44:13:468:44:1580:-125.243,0,-25.3009	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:39:11,28:11:396:28:1002:-78.755,0,-24.2426	0/0:26:26,0:26:932:0:0:0,-7.82678,-83.971	0/0:185:185,0:185:6631:0:0:0,-55.6905,-596.777	0/0:109:109,0:109:3870:0:0:0,-32.8123,-348.473	0/0:134:133,1:133:4753:1:36:0,-36.7397,-424.329	0/0:75:75,0:75:2682:0:0:0,-22.5772,-241.619	0/1:110:46,64:46:1647:64:2285:-172.762,0,-115.395	0/1:45:25,20:25:888:20:720:-51.5742,0,-66.6927	0/1:8:4,4:4:144:4:129:-9.51942,0,-10.9054	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.402	0/0:72:71,1:71:2529:1:21:0,-19.5742,-225.76	0/0:144:144,0:144:5163:0:0:0,-43.3483,-464.809	0/0:63:63,0:63:2236:0:0:0,-18.9649,-201.504	0/1:81:36,45:36:1296:45:1616:-121.347,0,-92.5605	0/1:36:23,13:23:828:13:468:-31.6226,0,-64.007	0/1:128:60,68:60:2160:68:2429:-180.318,0,-156.135	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:79:79,0:79:2813:0:0:0,-23.7814,-253.408	0/0:87:87,0:87:3089:0:0:0,-26.1896,-278.202	0/1:50:25,25:25:900:25:896:-65.8804,0,-66.2695	0/1:132:71,61:71:2521:61:2188:-157.438,0,-187.402	0/1:90:31,59:31:1104:59:2120:-163.971,0,-72.5779	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/0:97:97,0:97:3446:0:0:0,-29.1999,-310.354
chr03	19341352	.	GGTG	GGTA	119411	PASS	AB=0.588894;ABP=143.923;AC=155;AF=0.824468;AN=188;AO=5463;CIGAR=3M1X;DP=6328;DPB=6328;DPRA=0;EPP=11865.8;EPPR=1709.37;GTI=2;LEN=1;MEANALT=1.2766;MQM=53.5067;MQMR=58.7025;NS=94;NUMALT=1;ODDS=4.00358;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195739;QR=28307;RO=837;RPL=5463;RPP=11865.8;RPPR=1709.37;RPR=0;RUN=1;SAF=0;SAP=11865.8;SAR=5463;SRF=0;SRP=1820.53;SRR=837;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:5,14:5:173:14:496:-39.1137,0,-10.1904	0/1:70:19,51:19:625:51:1836:-143.681,0,-35.4787	0/1:71:29,41:29:962:41:1458:-109.319,0,-64.8968	1/1:221:0,221:0:0:221:7927:-711.166,-66.5276,0	1/1:28:0,28:0:0:28:1008:-90.782,-8.42884,0	1/1:55:0,54:0:0:54:1940:-174.023,-16.2556,0	1/1:103:0,103:0:0:103:3678:-330.765,-31.0061,0	0/1:87:31,56:31:1042:56:2003:-152.771,0,-67.5652	1/1:68:0,68:0:0:68:2448:-219.452,-20.47,0	1/1:62:0,62:0:0:62:2216:-198.281,-18.6639,0	1/1:45:0,45:0:0:45:1620:-145.551,-13.5464,0	0/1:44:20,24:20:690:24:864:-63.4342,0,-49.0678	0/1:55:22,33:22:738:33:1188:-90.1201,0,-49.9634	1/1:50:0,50:0:0:50:1784:-160.596,-15.0515,0	1/1:59:0,59:0:0:59:2105:-189.04,-17.7608,0	1/1:42:0,42:0:0:42:1512:-136.174,-12.6433,0	1/1:37:0,37:0:0:37:1328:-119.436,-11.1381,0	1/1:36:0,36:0:0:36:1296:-116.454,-10.8371,0	1/1:29:0,28:0:0:28:1004:-89.6091,-8.42884,0	1/1:93:0,93:0:0:93:3344:-299.472,-27.9958,0	1/1:115:0,115:0:0:115:4107:-367.996,-34.6185,0	0/1:64:40,24:40:1381:24:864:-58.6991,0,-104.528	1/1:64:0,63:0:0:63:2268:-203.542,-18.9649,0	1/1:60:0,60:0:0:60:2132:-191.275,-18.0618,0	1/1:46:0,43:0:0:43:1544:-138.493,-12.9443,0	0/1:173:62,110:62:2108:110:3929:-299.899,0,-137.77	1/1:135:0,135:0:0:135:4826:-433.219,-40.6391,0	1/1:24:0,24:0:0:24:851:-76.7877,-7.22472,0	0/1:126:46,80:46:1549:80:2868:-220.173,0,-101.757	1/1:93:0,93:0:0:93:3318:-297.811,-27.9958,0	1/1:62:0,61:0:0:61:2188:-196.002,-18.3628,0	0/1:6:5,1:5:160:1:36:-1.78699,0,-12.9088	1/1:21:0,21:0:0:21:752:-67.9121,-6.32163,0	1/1:5:0,5:0:0:5:180:-16.2321,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7181,-1.80618,0	0/1:7:2,5:2:71:5:180:-14.3919,0,-4.628	1/1:160:0,160:0:0:160:5739:-515.299,-48.1648,0	1/1:109:0,108:0:0:108:3880:-346.488,-32.5112,0	0/1:50:26,24:26:892:24:864:-61.5016,0,-65.5169	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	0/1:81:28,52:28:939:52:1864:-142.787,0,-60.385	0/1:33:16,17:16:563:17:612:-45.2752,0,-41.0532	1/1:139:0,139:0:0:139:4995:-447.805,-41.8432,0	1/1:61:0,60:0:0:60:2135:-191.735,-18.0618,0	1/1:49:0,49:0:0:49:1756:-158.098,-14.7505,0	0/1:69:27,42:27:898:42:1499:-114.059,0,-60.3502	1/1:75:0,74:0:0:74:2647:-236.973,-22.2762,0	1/1:115:0,115:0:0:115:4119:-369.55,-34.6185,0	1/1:111:0,111:0:0:111:3992:-358.547,-33.4143,0	0/1:83:38,45:38:1264:45:1607:-119.725,0,-88.9329	1/1:159:0,159:0:0:159:5697:-511.15,-47.8638,0	1/1:5:0,4:0:0:4:144:-12.9519,-1.20412,0	0/1:111:27,84:27:899:84:3024:-237.295,0,-47.6293	1/1:33:0,33:0:0:33:1179:-105.727,-9.93399,0	1/1:9:0,9:0:0:9:324:-29.2088,-2.70927,0	0/1:102:34,67:34:1122:67:2387:-182.996,0,-70.528	0/1:41:12,29:12:416:29:1044:-80.9895,0,-25.3558	0/1:5:1,3:1:36:3:108:-8.56911,0,-2.07478	1/1:6:0,6:0:0:6:216:-19.7776,-1.80618,0	1/1:49:0,49:0:0:49:1760:-158.44,-14.7505,0	0/1:85:46,39:46:1573:39:1393:-99.3652,0,-116.256	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	1/1:100:0,100:0:0:100:3580:-321.941,-30.103,0	1/1:136:0,133:0:0:133:4768:-427.315,-40.037,0	0/1:35:16,19:16:536:19:684:-51.141,0,-37.958	1/1:92:0,92:0:0:92:3280:-294.491,-27.6948,0	1/1:127:0,126:0:0:126:4523:-405.677,-37.9298,0	0/1:79:41,37:41:1371:37:1328:-95.8325,0,-99.5846	1/1:27:1,26:1:36:26:936:-80.8377,-4.52954,0	1/1:65:0,64:0:0:64:2291:-204.792,-19.2659,0	0/1:50:21,29:21:712:29:1044:-79.1393,0,-49.34	1/1:7:0,7:0:0:7:252:-22.9402,-2.10721,0	1/1:83:0,82:0:0:82:2939:-262.896,-24.6845,0	1/1:53:0,53:0:0:53:1893:-169.76,-15.9546,0	1/1:85:0,85:0:0:85:3022:-271.178,-25.5876,0	1/1:117:0,117:0:0:117:4199:-377.123,-35.2205,0	0/1:82:43,39:43:1438:39:1386:-99.6019,0,-104.771	0/1:51:17,34:17:567:34:1224:-94.3369,0,-35.9889	0/1:7:5,2:5:174:2:72:-4.69103,0,-13.8857	1/1:101:0,101:0:0:101:3614:-324.474,-30.404,0	1/1:93:0,93:0:0:93:3327:-298.18,-27.9958,0	1/1:164:0,163:0:0:163:5846:-524.677,-49.0679,0	1/1:85:1,84:1:30:84:3019:-267.915,-22.588,0	0/1:62:24,38:24:824:38:1348:-102.803,0,-55.8068	0/1:53:14,39:14:476:39:1404:-109.193,0,-27.1316	0/1:100:44,54:44:1533:54:1940:-144.249,0,-108.418	1/1:39:0,39:0:0:39:1400:-124.84,-11.7402,0	1/1:67:0,67:0:0:67:2412:-216.376,-20.169,0	1/1:56:0,56:0:0:56:2003:-178.981,-16.8577,0	0/1:30:15,15:15:499:15:527:-38.613,0,-36.1918	0/1:65:23,42:23:764:42:1503:-115.641,0,-49.5005	0/1:57:36,20:36:1246:20:716:-47.3729,0,-95.2068	1/1:54:0,54:0:0:54:1940:-174.417,-16.2556,0	1/1:78:0,77:0:0:77:2768:-248.241,-23.1793,0
chr03	19443678	.	A	T	15256.6	PASS	AB=0.506254;ABP=4.09672;AC=33;AF=0.175532;AN=188;AO=1630;CIGAR=1X;DP=8335;DPB=8335;DPRA=1.41127;EPP=3542.51;EPPR=14430.6;GTI=0;LEN=1;MEANALT=1.02564;MQM=28.4098;MQMR=40.1413;NS=94;NUMALT=1;ODDS=3.21202;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57744;QR=239075;RO=6704;RPL=1630;RPP=3542.51;RPPR=14430.6;RPR=0;RUN=1;SAF=1630;SAP=3542.51;SAR=0;SRF=6704;SRP=14560.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:35,28:35:1247:28:995:-44.9361,0,-86.9426	0/1:63:23,40:23:828:40:1405:-71.819,0,-50.7476	0/1:176:90,86:90:3212:86:3036:-143.211,0,-213.098	0/0:135:135,0:135:4830:0:0:0,-40.639,-422.445	0/0:22:22,0:22:788:0:0:0,-6.62266,-68.6813	0/0:18:18,0:18:648:0:0:0,-5.41854,-55.1377	0/0:62:62,0:62:2216:0:0:0,-18.6639,-193.421	0/1:125:61,64:61:2168:64:2263:-108.921,0,-147.193	0/0:59:59,0:59:2096:0:0:0,-17.7608,-177.813	0/0:71:71,0:71:2509:0:0:0,-21.3731,-218.116	0/0:92:92,0:92:3300:0:0:0,-27.6948,-288.624	0/1:79:37,42:37:1298:42:1479:-72.4501,0,-85.62	0/1:68:31,37:31:1086:37:1292:-62.9083,0,-72.4542	0/0:92:92,0:92:3225:0:0:0,-27.6948,-277.482	0/0:53:53,0:53:1873:0:0:0,-15.9546,-162.029	0/0:67:67,0:67:2380:0:0:0,-20.169,-203.101	0/0:44:44,0:44:1568:0:0:0,-13.2453,-134.029	0/0:31:31,0:31:1078:0:0:0,-9.33193,-91.6323	0/0:63:63,0:63:2212:0:0:0,-18.9649,-186.044	0/0:181:181,0:181:6488:0:0:0,-54.4864,-566.018	0/0:108:108,0:108:3855:0:0:0,-32.5112,-329.11	0/1:67:21,46:21:756:46:1645:-105.166,0,-45.0297	0/0:56:55,1:55:1972:1:36:0,-13.9549,-168.232	0/0:65:65,0:65:2315:0:0:0,-19.5669,-197.71	0/0:71:71,0:71:2548:0:0:0,-21.3731,-217.63	0/1:186:100,86:100:3563:86:3053:-174.817,0,-256.473	0/0:245:244,1:244:8679:1:36:0,-71.0161,-741.103	0/0:23:23,0:23:824:0:0:0,-6.92369,-71.4257	0/1:276:123,152:123:4412:152:5400:-324.721,0,-304.622	0/0:152:149,3:149:5318:3:99:0,-38.6169,-449.285	0/0:73:73,0:73:2603:0:0:0,-21.9752,-227.723	0/1:7:6,1:6:216:1:36:-0.628992,0,-16.8312	0/0:45:45,0:45:1604:0:0:0,-13.5463,-137.934	0/0:29:29,0:29:1040:0:0:0,-8.72987,-88.0786	0/0:35:35,0:35:1239:0:0:0,-10.536,-104.753	0/1:47:20,27:20:711:27:956:-47.6977,0,-45.7647	0/0:149:149,0:149:5310:0:0:0,-44.8535,-466.472	0/0:122:122,0:122:4376:0:0:0,-36.7257,-376.915	0/1:64:35,29:35:1243:29:1019:-47.5403,0,-84.5831	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.2659	0/1:152:80,72:80:2849:72:2571:-131.089,0,-198.357	0/1:25:14,11:14:496:11:392:-19.7621,0,-35.1284	0/0:263:263,0:263:9388:0:0:0,-79.1709,-801.994	0/0:43:43,0:43:1518:0:0:0,-12.9443,-131.628	0/0:43:43,0:43:1535:0:0:0,-12.9443,-133.91	0/1:87:42,45:42:1496:45:1590:-94.2613,0,-105.504	0/0:141:141,0:141:5022:0:0:0,-42.4452,-422.357	0/0:128:128,0:128:4580:0:0:0,-38.5318,-399.355	0/0:80:80,0:80:2864:0:0:0,-24.0824,-250.074	0/1:139:66,73:66:2356:73:2584:-144.423,0,-162.212	0/0:78:78,0:78:2779:0:0:0,-23.4803,-241.486	0/0:14:14,0:14:500:0:0:0,-4.21442,-43.0837	0/1:162:94,68:94:3355:68:2395:-106.985,0,-235.265	0/0:74:74,0:74:2639:0:0:0,-22.2762,-232.222	0/0:16:16,0:16:576:0:0:0,-4.81648,-48.6418	0/1:148:69,79:69:2472:79:2803:-147.259,0,-165.587	0/1:11:5,6:5:180:6:216:-12.6539,0,-12.8011	0/1:21:12,9:12:432:9:313:-17.657,0,-32.203	0/0:15:15,0:15:536:0:0:0,-4.51545,-46.9952	0/0:81:81,0:81:2895:0:0:0,-24.3834,-247.219	0/1:130:66,64:66:2352:64:2269:-125.901,0,-164.976	0/0:20:20,0:20:716:0:0:0,-6.0206,-61.9778	0/0:134:134,0:134:4820:0:0:0,-40.338,-420.557	0/0:261:257,4:257:9178:4:144:0,-67.8286,-785.788	0/1:92:43,49:43:1540:49:1756:-91.6061,0,-102.144	0/0:63:63,0:63:2264:0:0:0,-18.9649,-197.866	0/0:117:116,1:116:4114:1:36:0,-32.3177,-354.858	0/1:178:66,112:66:2352:112:3942:-234.833,0,-150.918	0/0:70:70,0:70:2486:0:0:0,-21.0721,-213.937	0/0:56:56,0:56:1983:0:0:0,-16.8577,-167.417	0/1:45:23,22:23:811:22:788:-46.0813,0,-57.7412	0/0:40:40,0:40:1436:0:0:0,-12.0412,-125.552	0/0:140:139,1:139:4946:1:36:0,-39.5855,-409.832	0/0:85:85,0:85:3023:0:0:0,-25.5875,-255.414	0/0:82:82,0:82:2881:0:0:0,-24.6845,-246.665	0/0:197:197,0:197:7059:0:0:0,-59.3029,-614.679	0/1:109:69,40:69:2476:40:1419:-58.8213,0,-175.175	0/1:130:76,54:76:2727:54:1918:-84.2954,0,-191.435	0/1:34:18,16:18:636:16:572:-26.8156,0,-44.232	0/0:113:113,0:113:4022:0:0:0,-34.0164,-347.282	0/0:111:111,0:111:3968:0:0:0,-33.4143,-330.322	0/0:138:138,0:138:4940:0:0:0,-41.5421,-428.387	0/0:42:42,0:42:1500:0:0:0,-12.6433,-130.597	0/1:72:37,35:37:1324:35:1230:-67.8159,0,-94.0227	0/1:32:14,18:14:500:18:627:-36.3061,0,-33.9408	0/1:93:50,43:50:1788:43:1527:-83.2303,0,-126.785	0/0:20:20,0:20:716:0:0:0,-6.0206,-60.8974	0/0:57:57,0:57:2006:0:0:0,-17.1587,-169.132	0/0:77:77,0:77:2736:0:0:0,-23.1793,-228.43	0/1:99:46,53:46:1625:53:1888:-100.856,0,-110.367	0/1:178:93,85:93:3335:85:3030:-154.143,0,-232.14	0/1:40:13,27:13:468:27:948:-57.3175,0,-29.1751	0/0:95:95,0:95:3408:0:0:0,-28.5978,-295.512	0/0:71:71,0:71:2513:0:0:0,-21.3731,-217.114
chr03	19484103	.	T	C	243488	PASS	AB=0.544867;ABP=73.3529;AC=154;AF=0.836957;AN=184;AO=11099;CIGAR=1X;DP=12951;DPB=12951;DPRA=0;EPP=24104.2;EPPR=4011.55;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.9452;MQMR=59.5444;NS=92;NUMALT=1;ODDS=4.98009;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=396357;QR=66052;RO=1846;RPL=0;RPP=24104.2;RPPR=4011.55;RPR=11099;RUN=1;SAF=11099;SAP=24104.2;SAR=0;SRF=1846;SRP=4011.55;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:23,41:23:824:41:1456:-112.07,0,-55.2174	0/1:165:80,85:80:2868:85:3043:-224.427,0,-208.687	0/1:111:34,77:34:1209:77:2760:-215.227,0,-75.6892	1/1:191:1,190:1:36:190:6816:-609.911,-53.8985,0	1/1:128:0,128:0:0:128:4592:-413.444,-38.5318,0	1/1:67:2,65:2:72:65:2327:-202.852,-13.3323,0	1/1:160:0,160:0:0:160:5724:-515.278,-48.1648,0	0/1:186:84,102:84:3005:102:3628:-270.73,0,-214.686	1/1:145:0,145:0:0:145:5182:-466.519,-43.6494,0	1/1:126:0,126:0:0:126:4491:-404.36,-37.9298,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	0/1:98:46,52:46:1656:52:1852:-137.459,0,-119.818	0/1:99:56,43:56:2016:43:1544:-109.451,0,-151.903	1/1:153:0,153:0:0:153:5474:-492.787,-46.0576,0	1/1:124:1,123:1:36:123:4382:-390.949,-33.7294,0	1/1:84:1,83:1:36:83:2959:-262.945,-21.6882,0	1/1:128:0,128:0:0:128:4583:-412.634,-38.5318,0	1/1:129:0,129:0:0:129:4600:-414.164,-38.8329,0	1/1:50:0,50:0:0:50:1783:-160.751,-15.0515,0	1/1:289:0,289:0:0:289:10364:-932.677,-86.9977,0	1/1:200:0,199:0:0:199:7078:-636.723,-59.905,0	0/1:158:105,53:105:3734:53:1876:-121.556,0,-288.644	1/1:191:0,191:0:0:191:6786:-610.814,-57.4967,0	1/1:143:0,143:0:0:143:5096:-458.779,-43.0473,0	1/1:167:0,167:0:0:167:5975:-537.778,-50.272,0	0/1:402:172,230:172:6138:230:8213:-618.159,0,-431.403	1/1:246:0,246:0:0:246:8796:-791.629,-74.0534,0	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	0/1:334:143,190:143:5108:190:6759:-507.356,0,-358.648	1/1:297:9,288:9:324:288:10290:-896.53,-59.9178,0	1/1:177:0,177:0:0:177:6308:-567.778,-53.2823,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:276:0,276:0:0:276:9876:-888.782,-83.0843,0	1/1:363:0,363:0:0:363:12928:-1163.34,-109.274,0	0/1:81:33,48:33:1188:48:1703:-129.164,0,-82.8428	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:173:66,107:66:2376:107:3819:-291.826,0,-162.009	0/1:46:23,23:23:828:23:819:-60.1842,0,-60.9861	1/1:239:0,239:0:0:239:8532:-767.881,-71.9462,0	1/1:137:0,137:0:0:137:4898:-440.269,-41.2411,0	1/1:102:0,101:0:0:101:3592:-322.997,-30.404,0	0/1:146:51,95:51:1832:95:3400:-262.264,0,-120.923	1/1:236:0,236:0:0:236:8439:-759.484,-71.0431,0	1/1:213:0,212:0:0:212:7601:-682.802,-63.8184,0	1/1:142:0,141:0:0:141:5056:-454.824,-42.4452,0	0/1:120:49,71:49:1730:71:2536:-192.368,0,-119.817	1/1:203:0,203:0:0:203:7198:-647.883,-61.1091,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:160:78,82:78:2800:82:2940:-216.599,0,-204.055	1/1:194:0,194:0:0:194:6952:-625.744,-58.3998,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	0/1:195:69,126:69:2427:126:4520:-348.266,0,-159.927	0/1:52:19,33:19:675:33:1184:-91.2148,0,-45.4096	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:146:0,146:0:0:146:5213:-469.308,-43.9504,0	0/1:152:77,75:77:2772:75:2683:-195.958,0,-203.884	.:.:.:.:.:.:.:.	1/1:292:0,292:0:0:292:10433:-938.849,-87.9008,0	1/1:368:2,366:2:72:366:13062:-1167.44,-103.942,0	0/1:64:32,32:32:1128:32:1137:-82.2556,0,-82.5244	1/1:152:0,152:0:0:152:5428:-488.631,-45.7566,0	1/1:241:1,240:1:36:240:8566:-767.337,-68.95,0	0/1:114:61,53:61:2196:53:1892:-136.241,0,-163.563	1/1:28:0,28:0:0:28:995:-89.8191,-8.42884,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	0/1:151:59,92:59:2116:92:3272:-249.245,0,-145.208	1/1:36:0,36:0:0:36:1275:-115.052,-10.8371,0	1/1:147:0,147:0:0:147:5206:-468.681,-44.2514,0	1/1:43:0,43:0:0:43:1529:-137.901,-12.9443,0	1/1:218:0,218:0:0:218:7793:-701.396,-65.6245,0	1/1:271:0,271:0:0:271:9708:-873.669,-81.5791,0	0/1:163:80,83:80:2872:83:2975:-218.914,0,-209.468	1/1:82:0,82:0:0:82:2934:-264.294,-24.6845,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:146:0,146:0:0:146:5218:-469.758,-43.9504,0	1/1:181:0,181:0:0:181:6478:-583.097,-54.4864,0	1/1:261:0,261:0:0:261:9296:-836.606,-78.5688,0	1/1:121:0,121:0:0:121:4323:-388.69,-36.4246,0	0/1:128:61,66:61:2188:66:2356:-173.68,0,-158.553	0/1:149:62,87:62:2228:87:3116:-235.811,0,-155.699	0/1:207:115,92:115:4140:92:3274:-232.567,0,-310.348	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:106:0,106:0:0:106:3778:-340.219,-31.9092,0	1/1:103:0,103:0:0:103:3649:-328.613,-31.0061,0	0/1:72:37,35:37:1317:35:1252:-91.3109,0,-97.1168	0/1:123:54,69:54:1936:69:2462:-184.806,0,-137.479	0/1:94:55,39:55:1953:39:1363:-94.6701,0,-147.733	1/1:193:0,193:0:0:193:6905:-621.518,-58.0988,0	1/1:147:0,147:0:0:147:5272:-474.615,-44.2514,0
chr03	19484106	.	A	T	30003.5	PASS	AB=0.453688;ABP=78.0326;AC=30;AF=0.163043;AN=184;AO=1844;CIGAR=1X;DP=12986;DPB=12986;DPRA=1.06349;EPP=3989.85;EPPR=24136.8;GTI=1;LEN=1;MEANALT=1.02564;MQM=59.5358;MQMR=59.9425;NS=92;NUMALT=1;ODDS=4.68369;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66148;QR=398472;RO=11138;RPL=2;RPP=3989.85;RPPR=24145.5;RPR=1842;RUN=1;SAF=1844;SAP=4007.21;SAR=0;SRF=11137;SRP=24180.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:41,23:41:1464:23:813:-54.2232,0,-112.79	0/1:166:85,81:85:3002:81:2907:-211.891,0,-220.44	0/1:110:77,33:77:2734:33:1188:-74.1046,0,-213.187	0/0:189:188,1:188:6711:1:36:0,-53.2964,-600.464	0/0:129:129,0:129:4606:0:0:0,-38.8329,-414.701	0/0:68:66,2:66:2334:2:72:0,-13.6333,-203.48	0/0:163:163,0:163:5821:0:0:0,-49.0679,-524.002	0/1:184:102,82:102:3668:82:2952:-210.521,0,-274.929	0/0:145:145,0:145:5216:0:0:0,-43.6493,-469.575	0/0:124:124,0:124:4417:0:0:0,-37.3277,-397.703	0/0:91:91,0:91:3230:0:0:0,-27.3937,-290.92	0/1:99:53,46:53:1904:46:1652:-119.157,0,-141.836	0/1:100:44,56:44:1584:56:2012:-151.242,0,-112.749	0/0:152:152,0:152:5468:0:0:0,-45.7566,-492.245	0/0:126:125,1:125:4442:1:36:0,-34.3315,-396.332	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:131:131,0:131:4670:0:0:0,-39.4349,-420.442	0/0:131:130,1:130:4664:1:25:0,-36.9358,-417.421	0/0:50:49,0:49:1748:0:0:0,-14.7505,-157.244	0/0:288:288,0:288:10290:0:0:0,-86.6966,-926.022	0/0:202:202,0:202:7199:0:0:0,-60.8081,-647.964	0/1:155:52,103:52:1864:103:3696:-286.129,0,-121.38	0/0:191:191,0:191:6845:0:0:0,-57.4967,-616.112	0/0:141:141,0:141:5042:0:0:0,-42.4452,-453.793	0/0:169:169,0:169:6068:0:0:0,-50.8741,-546.053	0/1:403:228,175:228:8163:175:6269:-442.902,0,-613.363	0/0:249:249,0:249:8937:0:0:0,-74.9565,-804.306	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:332:190,142:190:6805:142:5095:-358.423,0,-512.15	0/0:300:292,8:292:10321:8:273:0,-65.4266,-903.923	0/0:179:179,0:179:6387:0:0:0,-53.8844,-574.787	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:274:273,0:273:9770:0:0:0,-82.1812,-878.884	0/0:366:366,0:366:13035:0:0:0,-110.177,-1172.95	0/1:83:49,34:49:1756:34:1220:-85.119,0,-133.33	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:171:106,65:106:3777:65:2332:-158.653,0,-288.649	0/1:44:21,23:21:756:23:824:-61.2273,0,-55.1219	0/0:241:241,0:241:8622:0:0:0,-72.5482,-775.972	0/0:136:136,0:136:4884:0:0:0,-40.9401,-439.008	0/0:104:103,1:103:3700:1:36:0,-27.7088,-329.473	0/1:149:99,50:99:3552:50:1796:-116.771,0,-275.033	0/0:237:237,0:237:8512:0:0:0,-71.3441,-766.044	0/0:215:215,0:215:7692:0:0:0,-64.7214,-691.2	0/0:142:142,0:142:5077:0:0:0,-42.7463,-457.073	0/1:120:72,48:72:2577:48:1724:-119.286,0,-196.054	0/0:202:201,0:201:7209:0:0:0,-60.507,-648.501	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:161:84,77:84:2990:77:2742:-198.534,0,-220.794	0/0:196:196,0:196:7040:0:0:0,-59.0019,-633.602	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:197:128,69:128:4577:69:2484:-164.143,0,-352.791	0/1:53:34,19:34:1209:19:684:-45.8733,0,-93.1595	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/0:142:142,0:142:5077:0:0:0,-42.7463,-457.073	0/1:151:74,77:74:2664:77:2772:-204.196,0,-194.549	.:.:.:.:.:.:.:.	0/0:292:292,0:292:10391:0:0:0,-87.9008,-934.964	0/0:366:365,1:365:13081:1:36:0,-106.579,-1172.38	0/1:65:31,34:31:1108:34:1224:-90.8649,0,-79.3485	0/0:154:154,0:154:5525:0:0:0,-46.3586,-497.352	0/0:242:240,1:240:8586:1:36:0,-69.3048,-769.136	0/1:118:54,64:54:1929:64:2288:-170.622,0,-138.363	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6309	0/0:81:81,0:81:2889:0:0:0,-24.3834,-260.245	0/1:150:91,59:91:3257:59:2120:-145.869,0,-248.194	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.443	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.489	0/0:219:219,0:219:7849:0:0:0,-65.9256,-706.43	0/0:270:270,0:270:9689:0:0:0,-81.2781,-871.955	0/1:162:84,78:84:3004:78:2800:-203.29,0,-221.667	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:148:148,0:148:5304:0:0:0,-44.5524,-477.494	0/0:183:183,0:183:6568:0:0:0,-55.0885,-591.191	0/0:258:258,0:258:9219:0:0:0,-77.6657,-829.663	0/0:119:119,0:119:4265:0:0:0,-35.8226,-383.47	0/1:129:67,62:67:2389:62:2224:-161.528,0,-176.405	0/1:148:86,62:86:3092:62:2220:-155.315,0,-233.952	0/1:204:91,113:91:3248:113:4068:-304.775,0,-231.132	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/0:104:104,0:104:3740:0:0:0,-31.3071,-336.799	0/1:73:36,37:36:1292:37:1328:-97.8081,0,-94.6086	0/1:126:71,55:71:2541:55:1976:-140.174,0,-191.009	0/1:94:39,55:39:1400:55:1972:-149.444,0,-98.0024	0/0:192:192,0:192:6884:0:0:0,-57.7978,-619.626	0/0:148:147,1:147:5276:1:36:0,-40.9542,-471.376
chr03	19484140	.	A	C	28698.4	PASS	AB=0.452375;ABP=81.4;AC=30;AF=0.163043;AN=184;AO=1812;CIGAR=1X;DP=12760;DPB=12760;DPRA=1.09096;EPP=3920.37;EPPR=23756.7;GTI=1;LEN=1;MEANALT=1.02778;MQM=59.5215;MQMR=59.9422;NS=92;NUMALT=1;ODDS=4.98092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64102;QR=386991;RO=10943;RPL=1812;RPP=3937.72;RPPR=23756.7;RPR=0;RUN=1;SAF=1810;SAP=3920.37;SAR=2;SRF=10941;SRP=23748.1;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:40,23:40:1392:23:807:-53.9843,0,-106.609	0/1:160:84,76:84:2992:76:2715:-196.428,0,-221.34	0/1:107:75,32:75:2646:32:1126:-69.4258,0,-206.177	0/0:188:187,1:187:6613:1:36:0,-52.9954,-591.66	0/0:121:121,0:121:4296:0:0:0,-36.4246,-386.818	0/0:66:65,1:65:2308:1:36:0,-16.2697,-204.383	0/0:158:158,0:158:5587:0:0:0,-47.5627,-502.959	0/1:185:102,83:102:3614:83:2961:-211.029,0,-269.774	0/0:144:144,0:144:5065:0:0:0,-43.3483,-456.004	0/0:123:123,0:123:4317:0:0:0,-37.0267,-388.711	0/0:89:89,0:89:3172:0:0:0,-26.7917,-285.706	0/1:96:53,43:53:1900:43:1515:-107.736,0,-142.379	0/1:99:44,55:44:1572:55:1955:-146.415,0,-111.97	0/0:154:154,0:154:5436:0:0:0,-46.3586,-489.376	0/0:124:124,0:124:4382:0:0:0,-37.3277,-394.549	0/0:88:88,0:88:3093:0:0:0,-26.4906,-278.6	0/0:130:130,0:130:4623:0:0:0,-39.1339,-416.216	0/0:130:129,0:129:4567:0:0:0,-38.8329,-410.838	0/0:48:48,0:48:1700:0:0:0,-14.4494,-153.286	0/0:280:280,0:280:9902:0:0:0,-84.2884,-891.136	0/0:194:194,0:194:6826:0:0:0,-58.3998,-614.423	0/1:157:52,105:52:1818:105:3687:-284.716,0,-116.638	0/0:185:185,0:185:6571:0:0:0,-55.6905,-591.475	0/0:137:137,0:137:4856:0:0:0,-41.2411,-437.067	0/0:167:167,0:167:5882:0:0:0,-50.272,-529.34	0/1:401:228,173:228:8060:173:6109:-429.117,0,-604.707	0/0:243:243,0:243:8562:0:0:0,-73.1503,-770.597	0/0:54:54,0:54:1915:0:0:0,-16.2556,-172.627	0/1:332:189,143:189:6636:143:5067:-355.988,0,-496.962	0/0:291:284,7:284:10109:7:252:0,-64.5886,-886.728	0/0:176:176,0:176:6199:0:0:0,-52.9813,-557.888	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:274:273,0:273:9637:0:0:0,-82.1812,-866.936	0/0:351:351,0:351:12451:0:0:0,-105.662,-1120.44	0/1:79:46,31:46:1627:31:1107:-76.3989,0,-123.171	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:167:105,62:105:3721:62:2198:-147.802,0,-284.817	0/1:45:22,23:22:788:23:797:-58.4889,0,-57.6984	0/0:237:237,0:237:8379:0:0:0,-71.3441,-754.128	0/0:135:135,0:135:4761:0:0:0,-40.639,-427.949	0/0:103:103,0:103:3643:0:0:0,-31.0061,-327.949	0/1:143:94,49:94:3320:49:1756:-114.979,0,-255.971	0/0:228:227,0:227:8015:0:0:0,-68.3338,-721.026	0/0:215:215,0:215:7628:0:0:0,-64.7214,-685.452	0/0:141:141,0:141:4990:0:0:0,-42.4452,-449.251	0/1:119:71,48:71:2493:48:1703:-117.709,0,-188.801	0/0:197:197,0:197:6990:0:0:0,-59.3029,-629.171	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:158:82,76:82:2911:76:2699:-195.572,0,-214.654	0/0:193:193,0:193:6868:0:0:0,-58.0988,-618.139	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:194:125,69:125:4391:69:2435:-160.329,0,-336.972	0/1:52:33,19:33:1168:19:676:-45.4848,0,-89.7737	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:143:143,0:143:5062:0:0:0,-43.0473,-455.728	0/1:149:74,75:74:2603:75:2645:-193.38,0,-189.667	.:.:.:.:.:.:.:.	0/0:283:283,0:283:10014:0:0:0,-85.1915,-901.069	0/0:357:356,1:356:12606:1:36:0,-103.869,-1129.68	0/1:64:31,33:31:1093:33:1167:-86.0352,0,-78.2962	0/0:152:152,0:152:5327:0:0:0,-45.7566,-479.565	0/0:235:234,1:234:8298:1:36:0,-67.1438,-743.236	0/1:114:53,61:53:1888:61:2153:-159.68,0,-135.881	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0583	0/0:80:80,0:80:2844:0:0:0,-24.0824,-256.2	0/1:151:92,59:92:3258:59:2068:-140.888,0,-247.987	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:144:143,1:143:5033:1:32:0,-40.149,-449.922	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.769	0/0:211:211,0:211:7419:0:0:0,-63.5173,-667.771	0/0:261:261,0:261:9257:0:0:0,-78.5688,-833.107	0/1:160:83,77:83:2972:77:2727:-197.328,0,-219.391	0/0:82:82,0:82:2887:0:0:0,-24.6845,-260.069	0/1:11:7,4:7:244:4:144:-10.0023,0,-18.9881	0/0:144:144,0:144:5054:0:0:0,-43.3483,-455.013	0/0:183:183,0:183:6494:0:0:0,-55.0885,-584.543	0/0:254:254,0:254:8956:0:0:0,-76.4616,-806.034	0/0:121:121,0:121:4282:0:0:0,-36.4246,-385.005	0/1:129:67,62:67:2355:62:2169:-156.598,0,-173.349	0/1:148:85,63:85:2985:63:2224:-155.771,0,-224.33	0/1:201:91,110:91:3213:110:3907:-291.199,0,-228.887	0/0:67:67,0:67:2383:0:0:0,-20.169,-214.728	0/0:108:108,0:108:3807:0:0:0,-32.5112,-342.83	0/0:102:102,0:102:3599:0:0:0,-30.7051,-324.121	0/1:70:35,35:35:1248:35:1244:-91.16,0,-91.5528	0/1:125:71,54:71:2523:54:1906:-134.177,0,-189.693	0/1:95:39,56:39:1363:56:1971:-149.05,0,-94.3698	0/0:187:187,0:187:6666:0:0:0,-56.2926,-600.019	0/0:146:146,0:146:5131:0:0:0,-43.9504,-461.94
chr03	19484148	.	GTGGA	TTGGA,TTGGT	477057	PASS	AB=0.509298,0.484891;ABP=6.24076,11.5407;AC=167,21;AF=0.888298,0.111702;AN=188;AO=15515,2109;CIGAR=1X4M,1X3M1X;DP=17714;DPB=17739.6;DPRA=0,1.47015;EPP=33684.7,4565.29;EPPR=26.8965;GTI=0;LEN=1,5;MEANALT=1.98936,2.82857;MQM=59.9617,59.4277;MQMR=60;NS=94;NUMALT=2;ODDS=0.558392;PAIRED=0,0;PAIREDR=0;PAO=64,64;PQA=1858.5,1858.5;PQR=0;PRO=0;QA=544814,71399;QR=332;RO=11;RPL=10672,1286;RPP=4758.45,223.729;RPPR=7.94546;RPR=4843,823;RUN=1,1;SAF=10671,1284;SAP=4755.19,219.932;SAR=4844,825;SRF=3;SRP=7.94546;SRR=8;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:0,76,0:0:0:76,0:2663,0:-239.859,-22.8783,0,-239.859,-22.8783,-239.859	1/1:108:0,107,0:0:0:107,0:3753,0:-337.52,-32.2102,0,-337.52,-32.2102,-337.52	1/1:116:0,116,0:0:0:116,0:4070,0:-366.372,-34.9195,0,-366.372,-34.9195,-366.372	1/1:335:1,328,1:1:28:328,1:11432,34:-1025.97,-96.5229,0,-1023.51,-95.9737,-1025.43	1/1:184:0,183,1:0:0:183,1:6461,25:-581.217,-55.0885,0,-579.268,-52.8897,-578.967	1/1:103:0,103,0:0:0:103,0:3627,0:-326.521,-31.0061,0,-326.521,-31.0061,-326.521	1/1:210:0,210,0:0:0:210,0:7401,0:-666.148,-63.2163,0,-666.148,-63.2163,-666.148	1/1:136:0,136,0:0:0:136,0:4805,0:-432.25,-40.9401,0,-432.25,-40.9401,-432.25	1/1:248:0,248,0:0:0:248,0:8691,0:-781.965,-74.6554,0,-781.965,-74.6554,-781.965	1/1:193:1,192,0:1:27:192,0:6738,0:-603.687,-55.399,0,-603.988,-57.7978,-606.116	1/1:118:0,118,0:0:0:118,0:4178,0:-376.206,-35.5215,0,-376.206,-35.5215,-376.206	1/1:90:0,90,0:0:0:90,0:3164,0:-284.871,-27.0927,0,-284.871,-27.0927,-284.871	1/1:66:0,66,0:0:0:66,0:2331,0:-209.817,-19.868,0,-209.817,-19.868,-209.817	1/1:190:0,190,0:0:0:190,0:6673,0:-600.6,-57.1957,0,-600.6,-57.1957,-600.6	1/1:185:0,185,0:0:0:185,0:6476,0:-582.922,-55.6906,0,-582.922,-55.6906,-582.922	1/1:121:0,120,0:0:0:120,0:4171,0:-375.221,-36.1236,0,-375.221,-36.1236,-375.221	1/1:144:0,144,0:0:0:144,0:5026,0:-452.298,-43.3483,0,-452.298,-43.3483,-452.298	1/1:154:0,154,0:0:0:154,0:5460,0:-491.529,-46.3586,0,-491.529,-46.3586,-491.529	1/1:64:0,64,0:0:0:64,0:2267,0:-204.293,-19.2659,0,-204.293,-19.2659,-204.293	1/1:325:0,321,0:0:0:321,0:11429,0:-1028.12,-96.6306,0,-1028.12,-96.6306,-1028.12	1/1:286:0,285,1:0:0:285,1:9913,32:-891.745,-85.7936,0,-889.167,-82.8953,-888.866	1/2:209:0,66,143:0:0:66,143:2282,4880:-581.685,-396.257,-376.389,-185.772,0,-142.724	1/1:271:0,270,1:0:0:270,1:9426,36:-847.787,-81.2781,0,-844.849,-77.9809,-844.548	1/1:161:0,160,1:0:0:160,1:5657,34:-508.665,-48.1648,0,-505.907,-45.0669,-505.606	1/1:224:0,224,0:0:0:224,0:7893,0:-710.255,-67.4307,0,-710.255,-67.4307,-710.255	1/2:564:0,321,243:0:0:321,243:11218,8190:-1576.07,-663.51,-566.88,-912.727,0,-839.577	1/1:381:0,380,1:0:0:380,1:13297,26:-1196.18,-114.391,0,-1194.14,-112.093,-1193.84	1/1:78:1,76,0:1:30:76,0:2650,0:-235.717,-20.5096,0,-236.018,-22.8783,-238.416	1/2:455:0,234,220:0:0:234,220:8275,7444:-1276.87,-603.154,-532.713,-673.809,0,-607.583	1/1:403:1,391,10:1:36:391,10:13716,345:-1230.66,-114.765,0,-1202.95,-89.7309,-1202.88	1/1:245:0,243,1:0:0:243,1:8512,27:-765.685,-73.1503,0,-763.556,-71.0965,-763.255	1/2:4:0,2,2:0:0:2,2:72,58:-10.8168,-4.90699,-4.30493,-6.23466,0,-5.6326	1/1:18:0,18,0:0:0:18,0:624,0:-56.4842,-5.41854,0,-56.4842,-5.41854,-56.4842	1/1:9:0,9,0:0:0:9,0:320,0:-29.0889,-2.70927,0,-29.0889,-2.70927,-29.0889	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:16:0,16,0:0:0:16,0:564,0:-51.0903,-4.81648,0,-51.0903,-4.81648,-51.0903	1/1:406:1,405,0:1:30:405,0:14159,0:-1271.12,-119.219,0,-1271.42,-121.917,-1273.82	1/1:449:1,445,0:1:27:445,0:15711,0:-1410.97,-131.843,0,-1411.27,-133.958,-1413.4	1/1:59:0,59,0:0:0:59,0:2066,0:-186.21,-17.7608,0,-186.21,-17.7608,-186.21	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:305:0,172,129:0:0:172,129:6067,4405:-851.452,-357.434,-305.657,-494.007,0,-455.175	1/2:68:0,30,36:0:0:30,36:1060,1236:-186.587,-100.255,-91.2241,-86.3303,0,-75.4932	1/1:361:0,354,0:0:0:354,0:12345,0:-1110.56,-106.565,0,-1110.56,-106.565,-1110.56	1/1:176:0,176,0:0:0:176,0:6145,0:-553.104,-52.9813,0,-553.104,-52.9813,-553.104	1/1:131:0,131,0:0:0:131,0:4588,0:-413.088,-39.4349,0,-413.088,-39.4349,-413.088	1/2:261:0,156,105:0:0:156,105:5472,3548:-732.873,-287.558,-240.598,-445.598,0,-413.99	1/1:306:1,305,0:1:31:305,0:10747,0:-963.549,-89.0157,0,-963.85,-91.8142,-966.338	1/1:287:0,286,0:0:0:286,0:9959,0:-895.316,-86.0946,0,-895.316,-86.0946,-895.316	1/1:185:0,185,0:0:0:185,0:6556,0:-590.126,-55.6906,0,-590.126,-55.6906,-590.126	1/2:193:0,118,71:0:0:118,71:4131,2431:-533.437,-197.323,-161.801,-336.138,0,-314.765	1/1:235:0,233,0:0:0:233,0:8200,0:-737.705,-70.14,0,-737.705,-70.14,-737.705	1/1:16:0,16,0:0:0:16,0:552,0:-50.0056,-4.81648,0,-50.0056,-4.81648,-50.0056	1/1:138:0,138,0:0:0:138,0:4866,0:-437.725,-41.5421,0,-437.725,-41.5421,-437.725	1/1:231:0,230,1:0:0:230,1:8124,31:-730.853,-69.2369,0,-728.365,-66.4385,-728.064	1/1:26:0,26,0:0:0:26,0:904,0:-81.6747,-7.82678,0,-81.6747,-7.82678,-81.6747	1/2:296:0,182,113:0:0:182,113:6423,3830:-833.1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chr03	19484169	.	G	A	20941.9	PASS	AB=0.453403;ABP=57.0424;AC=32;AF=0.172043;AN=186;AO=1307;CIGAR=1X;DP=8598;DPB=8598;DPRA=0.981698;EPP=2841.12;EPPR=15815.7;GTI=1;LEN=1;MEANALT=1.02564;MQM=59.4996;MQMR=59.9774;NS=93;NUMALT=1;ODDS=1.06619;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46736;QR=259611;RO=7290;RPL=0;RPP=2841.12;RPPR=15824.4;RPR=1307;RUN=1;SAF=0;SAP=2841.12;SAR=1307;SRF=1;SRP=15824.4;SRR=7289;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:93:51,42:51:1828:42:1504:-107.655,0,-136.805	0/1:75:47,28:47:1660:28:1004:-68.0904,0,-127.108	0/1:123:70,53:70:2503:53:1904:-134.609,0,-188.495	0/0:223:223,0:223:7950:0:0:0,-67.1297,-715.527	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:71:71,0:71:2518:0:0:0,-21.3731,-226.872	0/1:125:58,67:58:2072:67:2396:-178.248,0,-149.122	0/0:164:163,1:163:5787:1:36:0,-45.7706,-517.279	0/0:95:95,0:95:3385:0:0:0,-28.5978,-304.865	0/0:48:48,0:48:1677:0:0:0,-14.4494,-151.212	0/1:102:62,40:62:2206:40:1423:-97.6391,0,-168.099	0/1:89:49,40:49:1701:40:1440:-103.086,0,-126.579	0/0:60:60,0:60:2127:0:0:0,-18.0618,-191.698	0/0:100:100,0:100:3536:0:0:0,-30.103,-318.45	0/0:81:80,1:80:2811:1:36:0,-20.7852,-249.631	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:69:69,0:69:2458:0:0:0,-20.7711,-221.474	0/0:122:120,1:120:4282:1:36:0,-33.1608,-381.667	0/1:64:23,41:23:813:41:1469:-113.224,0,-54.2232	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.753	0/0:30:29,1:29:1022:1:36:0,-5.43262,-88.6926	0/0:84:84,0:84:2987:0:0:0,-25.2865,-269.063	0/1:214:136,78:136:4860:78:2795:-187.019,0,-373.131	0/0:212:212,0:212:7520:0:0:0,-63.8184,-676.846	0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.926	0/1:156:76,80:76:2719:80:2853:-209.972,0,-196.688	0/0:166:164,2:164:5835:2:72:0,-43.1343,-518.424	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:38:15,23:15:540:23:824:-63.0382,0,-37.4974	0/0:246:246,0:246:8764:0:0:0,-74.0534,-788.714	0/0:134:134,0:134:4800:0:0:0,-40.338,-432.156	0/1:59:24,35:24:860:35:1247:-94.771,0,-59.9611	.:.:.:.:.:.:.:.	0/1:178:102,76:102:3626:76:2716:-191.067,0,-272.963	0/1:29:13,16:13:456:16:568:-42.6247,0,-32.6434	0/0:175:175,0:175:6233:0:0:0,-52.6802,-561.068	0/0:73:73,0:73:2591:0:0:0,-21.9752,-233.439	0/0:61:61,0:61:2145:0:0:0,-18.3628,-193.317	0/1:142:87,55:87:3091:55:1976:-135.053,0,-235.673	0/0:122:122,0:122:4354:0:0:0,-36.7257,-392.035	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.604	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:84:60,24:60:2152:24:851:-51.6019,0,-168.661	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.551	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:166:95,71:95:3403:71:2539:-178.781,0,-256.513	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:115:69,46:69:2455:46:1616:-111.095,0,-186.586	0/1:75:44,31:44:1567:31:1100:-76.7241,0,-118.744	0/1:12:9,3:9:320:3:108:-6.46093,0,-25.53	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.995	0/1:95:54,41:54:1928:41:1476:-104.538,0,-145.199	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:216:216,0:216:7680:0:0:0,-65.0225,-691.24	0/0:141:141,0:141:5041:0:0:0,-42.4452,-453.835	0/1:32:14,18:14:504:18:644:-48.6363,0,-36.0651	0/0:84:84,0:84:2989:0:0:0,-25.2865,-269.241	0/0:170:170,0:170:6055:0:0:0,-51.1751,-545.057	0/1:100:38,62:38:1356:62:2190:-166.374,0,-92.2375	0/0:33:32,1:32:1124:1:36:0,-6.33571,-97.8669	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.903	0/1:46:22,24:22:783:24:860:-63.8568,0,-56.9456	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:147:147,0:147:5212:0:0:0,-44.2514,-469.219	0/0:107:107,0:107:3822:0:0:0,-32.2102,-344.176	0/0:118:118,0:118:4221:0:0:0,-35.5215,-380.069	0/0:186:186,0:186:6622:0:0:0,-55.9916,-596.06	0/1:139:82,57:82:2884:57:2044:-142.387,0,-216.762	0/0:121:121,0:121:4307:0:0:0,-36.4246,-387.806	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/0:106:105,1:105:3725:1:36:0,-28.3109,-331.851	0/0:180:180,0:180:6400:0:0:0,-54.1854,-575.932	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.405	0/1:90:48,42:48:1711:42:1497:-107.915,0,-127.182	0/1:70:44,26:44:1572:26:936:-63.4594,0,-120.699	0/1:148:80,68:80:2864:68:2444:-175.622,0,-213.445	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:43:20,23:20:712:23:824:-61.5106,0,-51.4624	0/1:77:39,38:39:1385:38:1364:-99.8532,0,-101.768	0/1:68:24,44:24:852:44:1584:-122.368,0,-56.5303	0/0:223:223,0:223:7917:0:0:0,-67.1297,-712.56	0/0:130:130,0:130:4630:0:0:0,-39.1339,-416.864
chr03	19572342	.	A	G	21225.8	PASS	AB=0.546655;ABP=45.9657;AC=35;AF=0.18617;AN=188;AO=1251;CIGAR=1X;DP=5893;DPB=5893;DPRA=1.10737;EPP=2710.84;EPPR=10026.6;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=59.9916;NS=94;NUMALT=1;ODDS=2.40073;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44458;QR=166089;RO=4640;RPL=1;RPP=2710.84;RPPR=10026.6;RPR=1250;RUN=1;SAF=0;SAP=2719.52;SAR=1251;SRF=0;SRP=10078.6;SRR=4640;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:15,24:15:536:24:837:-63.9055,0,-36.8346	0/1:99:41,58:41:1476:58:2042:-154.247,0,-103.334	0/1:83:33,50:33:1175:50:1780:-135.496,0,-81.0715	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:87:86,1:86:3084:1:36:0,-22.5913,-274.189	0/1:100:49,51:49:1756:51:1805:-132.628,0,-128.221	0/0:84:83,0:83:2961:0:0:0,-24.9855,-266.5	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.839	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:46:12,34:12:428:34:1192:-93.735,0,-25.0114	0/1:29:17,12:17:612:12:421:-29.4936,0,-46.6836	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.97	0/0:169:169,0:169:6051:0:0:0,-50.8741,-544.692	0/1:100:36,64:36:1292:64:2292:-176.438,0,-86.4808	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919	0/0:52:51,1:51:1824:1:36:0,-12.0553,-160.843	0/1:182:89,93:89:3185:93:3332:-245.31,0,-232.084	0/0:118:117,0:117:4199:0:0:0,-35.2205,-377.889	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:186:86,100:86:3092:100:3544:-263.176,0,-222.515	0/0:65:64,1:64:2300:1:36:0,-15.9687,-203.662	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:135:135,0:135:4832:0:0:0,-40.639,-435.032	0/0:101:101,0:101:3619:0:0:0,-30.404,-325.915	0/1:70:36,34:36:1283:34:1208:-87.954,0,-94.7005	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:84:40,44:40:1436:44:1550:-114.501,0,-104.251	0/1:37:21,16:21:756:16:568:-40.3138,0,-57.2291	0/1:101:55,46:55:1972:46:1652:-118.564,0,-147.351	0/1:46:23,23:23:813:23:828:-60.9967,0,-59.6417	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:83:35,48:35:1233:48:1693:-127.667,0,-86.2866	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/0:74:73,1:73:2608:1:32:0,-19.0769,-231.769	0/1:99:39,60:39:1389:60:2144:-163.426,0,-95.505	0/0:138:138,0:138:4948:0:0:0,-41.5421,-445.469	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:65:31,34:31:1112:34:1202:-88.9173,0,-80.8244	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/1:56:22,34:22:792:34:1220:-93.2491,0,-54.748	0/1:60:24,36:24:856:36:1279:-97.3506,0,-59.2993	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:90:42,48:42:1497:48:1711:-127.182,0,-106.566	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.97	0/0:85:85,0:85:3045:0:0:0,-25.5875,-274.278	0/1:49:24,25:24:856:25:892:-65.8492,0,-62.6106	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:108:105,3:105:3753:3:108:0,-22.4361,-327.893	0/1:83:29,54:29:1028:54:1936:-149.531,0,-67.8475	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:61:29,32:29:1029:32:1135:-84.0952,0,-74.5583	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:115:115,0:115:4109:0:0:0,-34.6184,-369.994	0/0:59:59,0:59:2090:0:0:0,-17.7608,-188.366	0/0:107:107,0:107:3795:0:0:0,-32.2102,-341.746	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/1:75:38,37:38:1368:37:1313:-95.8924,0,-100.844	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:61:59,2:59:2120:2:72:0,-11.5261,-184.232	0/0:66:66,0:66:2342:0:0:0,-19.868,-211.036	0/0:131:131,0:131:4689:0:0:0,-39.4349,-422.169	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/1:36:16,20:16:576:20:696:-52.1226,0,-41.3379	0/1:58:27,31:27:968:31:1108:-82.5713,0,-69.9776	0/1:88:46,42:46:1644:42:1490:-107.902,0,-121.758	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:33:15,18:15:540:18:644:-48.3566,0,-39.0025	0/1:64:28,36:28:1008:36:1260:-94.4331,0,-71.7704	0/1:38:13,25:13:464:25:896:-69.5212,0,-30.6584	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684
chr03	19572368	.	T	C	98615.6	PASS	AB=0.447657;ABP=57.3409;AC=153;AF=0.81383;AN=188;AO=4602;CIGAR=1X;DP=5874;DPB=5874;DPRA=0;EPP=9987.44;EPPR=2752.09;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9865;MQMR=60;NS=94;NUMALT=1;ODDS=3.10064;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163938;QR=45186;RO=1266;RPL=4601;RPP=9987.44;RPPR=2752.09;RPR=1;RUN=1;SAF=0;SAP=9996.13;SAR=4602;SRF=0;SRP=2752.09;SRR=1266;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:23,16:23:820:16:572:-39.8546,0,-62.1663	0/1:99:58,41:58:2072:41:1472:-102.974,0,-156.949	0/1:83:50,33:50:1800:33:1188:-82.2431,0,-137.297	1/1:119:0,119:0:0:119:4246:-382.317,-35.8226,0	1/1:32:0,32:0:0:32:1125:-101.555,-9.63296,0	1/1:36:0,36:0:0:36:1281:-115.591,-10.8371,0	1/1:86:0,86:0:0:86:3057:-275.359,-25.8886,0	0/1:100:51,49:51:1817:49:1748:-127.501,0,-133.706	1/1:86:0,86:0:0:86:3050:-274.727,-25.8886,0	1/1:58:0,58:0:0:58:2050:-184.768,-17.4597,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	0/1:47:35,12:35:1260:12:432:-25.0728,0,-99.5571	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:46:0,46:0:0:46:1637:-147.617,-13.8474,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	1/1:121:0,121:0:0:121:4318:-388.794,-36.4246,0	1/1:165:0,165:0:0:165:5922:-533.087,-49.67,0	0/1:102:64,37:64:2273:37:1332:-89.5644,0,-174.215	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:74:0,74:0:0:74:2613:-235.415,-22.2762,0	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	0/1:180:91,89:91:3238:89:3169:-231.248,0,-237.454	1/1:120:0,120:0:0:120:4243:-381.858,-36.1236,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:182:100,81:100:3577:81:2886:-205.128,0,-267.289	1/1:65:1,64:1:32:64:2285:-202.711,-16.3676,0	1/1:69:0,69:0:0:69:2438:-219.673,-20.7711,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:3:2,1:2:72:1:21:-1.19686,0,-5.93363	1/1:135:0,135:0:0:135:4825:-434.404,-40.6391,0	1/1:103:0,103:0:0:103:3662:-329.782,-31.0061,0	0/1:72:37,35:37:1328:35:1248:-90.9507,0,-98.1481	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:86:46,40:46:1614:40:1428:-102.929,0,-119.657	0/1:38:16,22:16:572:22:764:-57.6368,0,-40.3743	0/1:107:51,56:51:1798:56:1947:-143.29,0,-129.888	0/1:44:23,21:23:828:21:744:-54.039,0,-61.5988	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:85:49,36:49:1741:36:1263:-88.382,0,-131.385	1/1:79:0,79:0:0:79:2813:-253.408,-23.7814,0	1/1:102:1,101:1:32:101:3571:-318.396,-27.5057,0	1/1:74:1,73:1:32:73:2620:-232.848,-19.0769,0	0/1:99:61,38:61:2180:38:1352:-92.1784,0,-166.664	1/1:140:0,139:0:0:139:4946:-445.078,-41.8432,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:64:33,31:33:1180:31:1116:-81.4858,0,-87.2421	1/1:29:0,29:0:0:29:1002:-90.4862,-8.72987,0	1/1:26:0,26:0:0:26:918:-82.9353,-7.82678,0	0/1:57:34,23:34:1209:23:828:-57.6854,0,-91.9554	0/1:60:36,24:36:1273:24:837:-57.5838,0,-96.8091	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:40:0,40:0:0:40:1413:-127.465,-12.0412,0	0/1:89:47,42:47:1676:42:1500:-108.073,0,-124.336	0/1:6:1,5:1:36:5:165:-13.3674,0,-1.79209	1/1:121:0,121:0:0:121:4333:-390.143,-36.4246,0	1/1:85:0,85:0:0:85:3022:-272.208,-25.5876,0	0/1:48:25,23:25:900:23:828:-60.3947,0,-66.8716	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:107:2,105:2:72:105:3745:-330.413,-25.3735,0	0/1:85:56,29:56:2012:29:1040:-68.3268,0,-155.766	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:43:1,42:1:36:42:1499:-131.605,-9.34602,0	0/1:57:33,24:33:1184:24:860:-60.5631,0,-89.7096	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:112:0,111:0:0:111:3961:-356.321,-33.4143,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:106:0,105:0:0:105:3751:-337.428,-31.6082,0	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	0/1:76:38,38:38:1360:38:1353:-99.1901,0,-99.8223	1/1:57:0,57:0:0:57:2037:-183.602,-17.1587,0	0/1:12:8,4:8:273:4:144:-9.70126,0,-21.2878	1/1:60:2,58:2:72:58:2084:-180.993,-11.2251,0	1/1:68:0,68:0:0:68:2406:-216.796,-20.47,0	1/1:127:0,127:0:0:127:4491:-404.359,-38.2308,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	0/1:59:32,27:32:1152:27:972:-70.0371,0,-86.2294	0/1:88:43,45:43:1548:45:1597:-117.528,0,-113.122	1/1:24:0,24:0:0:24:850:-76.8191,-7.22472,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/1:65:37,28:37:1317:28:1003:-71.0187,0,-99.2629	0/1:40:26,14:26:928:14:500:-33.295,0,-71.7971	1/1:41:0,41:0:0:41:1460:-131.695,-12.3422,0	1/1:48:0,48:0:0:48:1701:-153.374,-14.4494,0
chr03	19646605	.	A	G	18575.3	PASS	AB=0.500954;ABP=3.02688;AC=36;AF=0.195652;AN=184;AO=1067;CIGAR=1X;DP=5751;DPB=5751;DPRA=1.06442;EPP=2091.39;EPPR=10035.6;GTI=0;LEN=1;MEANALT=1.10256;MQM=59.8388;MQMR=59.9878;NS=92;NUMALT=1;ODDS=2.15321;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37986;QR=167317;RO=4680;RPL=1040;RPP=2091.39;RPPR=10035.6;RPR=27;RUN=1;SAF=0;SAP=2319.97;SAR=1067;SRF=0;SRP=10165.5;SRR=4680;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/1:30:19,11:19:684:11:392:-26.5892,0,-52.8594	0/1:116:57,58:57:2031:58:2080:-152.576,0,-148.172	0/0:153:153,0:153:5467:0:0:0,-46.0576,-492.148	0/0:36:36,0:36:1272:0:0:0,-10.8371,-114.78	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.852	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4958	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:50:27,23:27:972:23:828:-59.7926,0,-72.7464	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.548	0/0:30:30,0:30:1071:0:0:0,-9.0309,-96.7016	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:130:130,0:130:4656:0:0:0,-39.1339,-419.202	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/1:74:33,41:33:1184:41:1455:-108.964,0,-84.5921	0/0:88:87,1:87:3120:1:32:0,-23.2915,-277.827	0/0:37:36,1:36:1296:1:36:0,-7.53983,-113.346	0/1:42:25,16:25:900:16:576:-39.4542,0,-68.6397	0/1:143:64,79:64:2292:79:2816:-210.621,0,-163.494	0/0:117:117,0:117:4155:0:0:0,-35.2205,-374.129	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:168:90,78:90:3223:78:2784:-200.226,0,-239.718	0/0:87:83,4:83:2988:4:144:0,-12.876,-255.837	0/0:82:82,0:82:2930:0:0:0,-24.6845,-263.933	0/1:4:2,2:2:72:2:63:-4.77903,0,-5.6326	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	.:.:.:.:.:.:.:.	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:163:163,0:163:5793:0:0:0,-49.0679,-521.485	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.223	0/1:42:25,17:25:900:17:588:-40.5998,0,-68.6778	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:113:57,55:57:2048:55:1963:-142.988,0,-150.635	0/1:23:12,11:12:428:11:396:-29.0587,0,-31.9351	0/1:78:46,32:46:1656:32:1133:-78.7963,0,-125.848	0/1:37:18,19:18:648:19:684:-50.7518,0,-47.5138	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:96:51,45:51:1820:45:1612:-116.47,0,-135.182	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.935	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.657	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:83:40,43:40:1440:43:1531:-113.083,0,-104.912	0/0:94:94,0:94:3356:0:0:0,-28.2968,-302.257	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:131:59,72:59:2104:72:2571:-192.204,0,-150.195	0/0:59:59,0:59:2096:0:0:0,-17.7608,-188.907	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:102:71,31:71:2535:31:1091:-67.7363,0,-197.696	0/1:27:13,14:13:468:14:500:-37.2076,0,-34.3318	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:67:66,1:66:2355:1:36:0,-16.5707,-208.61	0/1:96:47,49:47:1692:49:1721:-126.273,0,-123.668	.:.:.:.:.:.:.:.	0/0:148:148,0:148:5253:0:0:0,-44.5524,-472.908	0/0:106:106,0:106:3779:0:0:0,-31.9092,-340.31	0/1:45:23,22:23:820:22:781:-57.0665,0,-60.5762	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/0:142:141,1:141:5055:1:36:0,-39.148,-451.495	0/1:154:49,105:49:1747:105:3747:-291.068,0,-111.155	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/1:46:22,24:22:784:24:850:-62.9685,0,-57.0365	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:118:118,0:118:4220:0:0:0,-35.5215,-379.981	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/0:48:48,0:48:1706:0:0:0,-14.4494,-153.824	0/0:99:99,0:99:3542:0:0:0,-29.802,-318.988	0/1:37:23,14:23:828:14:500:-34.1981,0,-63.706	0/0:65:65,0:65:2331:0:0:0,-19.5669,-210.049	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/0:127:127,0:127:4529:0:0:0,-38.2308,-407.777	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.724	0/1:41:22,19:22:788:19:684:-49.5477,0,-58.9026	0/1:25:18,7:18:644:7:252:-15.5032,0,-50.7648	0/1:108:51,57:51:1817:57:2037:-151.087,0,-131.298	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:55:21,33:21:756:33:1145:-86.8721,0,-51.8853	0/1:57:16,41:16:576:41:1450:-113.629,0,-35.0163	0/0:143:143,0:143:5095:0:0:0,-43.0473,-458.696	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315
chr03	19765347	.	AAAAT	TAAAC,TAAAT	137234	PASS	AB=0.460829,0.536866;ABP=26.146,23.5042;AC=161,27;AF=0.856383,0.143617;AN=188;AO=5391,942;CIGAR=1X3M1X,1X4M;DP=6347;DPB=6347.8;DPRA=17.0511,0.971729;EPP=11709.4,2048.54;EPPR=5.18177;GTI=1;LEN=5,1;MEANALT=1.45161,2.0625;MQM=53.5964,59.6699;MQMR=60;NS=94;NUMALT=2;ODDS=2.3086;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=140,0;PQR=0;PRO=0;QA=189485,33538;QR=35;RO=1;RPL=0,0;RPP=11709.4,2048.54;RPPR=5.18177;RPR=5391,942;RUN=1,1;SAF=0,0;SAP=11709.4,2048.54;SAR=5391,942;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:0,26,28:0:0:26,28:914,991:-155.296,-81.0583,-73.2316,-74.5898,0,-66.1609	1/2:127:0,60,67:0:0:60,67:2121,2404:-367.669,-196.409,-178.347,-171.614,0,-151.445	1/2:83:0,30,53:0:0:30,53:1050,1908:-241.21,-156.034,-147.003,-85.529,0,-69.5744	1/1:102:0,102,0:0:0:102,0:3608,0:-324.07,-30.7051,0,-324.07,-30.7051,-324.07	1/1:60:0,60,0:0:0:60,0:2131,0:-191.594,-18.0618,0,-191.594,-18.0618,-191.594	1/1:46:0,46,0:0:0:46,0:1631,0:-146.785,-13.8474,0,-146.785,-13.8474,-146.785	1/1:84:0,83,0:0:0:83,0:2903,0:-260.946,-24.9855,0,-260.946,-24.9855,-260.946	1/1:84:0,84,0:0:0:84,0:2935,0:-263.242,-25.2865,0,-263.242,-25.2865,-263.242	1/1:114:0,114,0:0:0:114,0:3995,0:-358.441,-34.3174,0,-358.441,-34.3174,-358.441	1/1:82:0,81,0:0:0:81,0:2849,0:-255.978,-24.3834,0,-255.978,-24.3834,-255.978	1/1:25:0,25,0:0:0:25,0:860,0:-76.8819,-7.52575,0,-76.8819,-7.52575,-76.8819	1/2:48:0,20,28:0:0:20,28:708,1000:-139.309,-81.881,-75.8604,-57.7821,0,-49.3532	1/2:48:0,30,18:0:0:30,18:1057,644:-138.092,-52.8721,-43.8412,-85.5743,0,-80.1558	1/1:59:0,59,0:0:0:59,0:2073,0:-185.66,-17.7608,0,-185.66,-17.7608,-185.66	1/1:56:0,56,0:0:0:56,0:1963,0:-174.952,-16.8577,0,-174.952,-16.8577,-174.952	1/1:34:0,34,0:0:0:34,0:1156,0:-103.383,-10.235,0,-103.383,-10.235,-103.383	1/1:80:0,80,0:0:0:80,0:2800,0:-250.487,-24.0824,0,-250.487,-24.0824,-250.487	1/1:50:0,50,0:0:0:50,0:1781,0:-159.697,-15.0515,0,-159.697,-15.0515,-159.697	1/2:25:0,13,12:0:0:13,12:457,432:-72.2492,-35.6006,-31.6872,-37.002,0,-33.3897	1/1:127:0,127,0:0:0:127,0:4488,0:-402.674,-38.2308,0,-402.674,-38.2308,-402.674	1/1:116:0,116,0:0:0:116,0:4103,0:-367.933,-34.9195,0,-367.933,-34.9195,-367.933	1/1:86:0,86,0:0:0:86,0:3004,0:-270.413,-25.8886,0,-270.413,-25.8886,-270.413	1/1:96:0,96,0:0:0:96,0:3373,0:-302.933,-28.8989,0,-302.933,-28.8989,-302.933	1/1:94:0,93,0:0:0:93,0:3262,0:-292.724,-27.9958,0,-292.724,-27.9958,-292.724	1/1:50:0,48,0:0:0:48,0:1702,0:-151.973,-14.4494,0,-151.973,-14.4494,-151.973	1/2:214:0,84,128:0:0:84,128:2934,4535:-607.476,-369.431,-344.145,-238.063,0,-199.531	1/1:128:0,128,0:0:0:128,0:4498,0:-404.242,-38.5318,0,-404.242,-38.5318,-404.242	1/1:20:0,20,0:0:0:20,0:690,0:-61.8673,-6.0206,0,-61.8673,-6.0206,-61.8673	1/1:157:0,156,0:0:0:156,0:5499,0:-493.962,-46.9607,0,-493.962,-46.9607,-493.962	1/1:65:0,65,0:0:0:65,0:2304,0:-206.287,-19.567,0,-206.287,-19.567,-206.287	1/1:84:0,84,0:0:0:84,0:2954,0:-265.491,-25.2865,0,-265.491,-25.2865,-265.491	1/2:11:0,5,6:0:0:5,6:179,216:-32.5586,-17.9843,-16.4792,-14.9327,0,-13.1265	1/1:6:0,6,0:0:0:6,0:215,0:-19.6721,-1.80618,0,-19.6721,-1.80618,-19.6721	1/1:2:0,2,0:0:0:2,0:72,0:-6.82968,-0.60206,0,-6.82968,-0.60206,-6.82968	1/1:3:0,3,0:0:0:3,0:108,0:-10.0548,-0.90309,0,-10.0548,-0.90309,-10.0548	1/1:2:0,2,0:0:0:2,0:72,0:-6.82461,-0.60206,0,-6.82461,-0.60206,-6.82461	1/1:184:0,184,0:0:0:184,0:6445,0:-578.862,-55.3895,0,-578.862,-55.3895,-578.862	1/1:87:0,87,0:0:0:87,0:3029,0:-271.441,-26.1896,0,-271.441,-26.1896,-271.441	1/2:36:0,24,12:0:0:24,12:850,424:-103.776,-34.8841,-27.6593,-69.2446,0,-65.6323	1/1:4:0,4,0:0:0:4,0:138,0:-12.7445,-1.20412,0,-12.7445,-1.20412,-12.7445	1/2:99:0,48,50:0:0:48,50:1701,1772:-282.564,-144.355,-129.905,-138.261,0,-123.209	1/2:27:0,15,12:0:0:15,12:529,428:-78.0844,-35.2464,-30.731,-43.1919,0,-39.5795	1/1:113:0,113,0:0:0:113,0:3958,0:-355.421,-34.0164,0,-355.421,-34.0164,-355.421	1/1:68:0,68,0:0:0:68,0:2388,0:-214.655,-20.47,0,-214.655,-20.47,-214.655	1/1:56:0,56,0:0:0:56,0:1952,0:-175.019,-16.8577,0,-175.019,-16.8577,-175.019	1/1:91:0,91,0:0:0:91,0:3191,0:-287.115,-27.3937,0,-287.115,-27.3937,-287.115	1/1:88:0,87,1:0:0:87,1:3065,36:-273.937,-26.1896,0,-270.999,-22.8924,-270.698	1/1:117:0,117,0:0:0:117,0:4074,0:-365.87,-35.2205,0,-365.87,-35.2205,-365.87	1/1:85:0,85,0:0:0:85,0:2976,0:-267.682,-25.5876,0,-267.682,-25.5876,-267.682	1/2:73:0,33,40:0:0:33,40:1166,1424:-211.303,-116.416,-106.482,-95.2412,0,-83.2	1/1:112:0,112,0:0:0:112,0:3935,0:-353.643,-33.7154,0,-353.643,-33.7154,-353.643	1/1:2:0,2,0:0:0:2,0:65,0:-6.16884,-0.60206,0,-6.16884,-0.60206,-6.16884	1/2:72:1,38,33:1:35:38,33:1317,1167:-198.514,-92.0146,-83.4231,-103.952,0,-96.866	1/1:29:0,29,0:0:0:29,0:1017,0:-91.7562,-8.72987,0,-91.7562,-8.72987,-91.7562	1/1:8:0,8,0:0:0:8,0:284,0:-25.8484,-2.40824,0,-25.8484,-2.40824,-25.8484	1/2:61:0,30,31:0:0:30,31:1041,1078:-172.414,-87.9949,-78.964,-84.7658,0,-75.4339	1/2:53:0,14,39:0:0:14,39:490,1380:-152.069,-112.752,-108.537,-39.6654,0,-27.9253	2/2:4:0,0,4:0:0:0,4:0,144:-13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chr03	19767693	.	AAGG	CAGA,CAGG	559967	PASS	AB=0.496492,0.498291;ABP=3.60444,3.15131;AC=163,25;AF=0.867021,0.132979;AN=188;AO=17588,2837;CIGAR=1X2M1X,1X3M;DP=20517;DPB=20518.5;DPRA=0,1.34501;EPP=38168.8,6163.48;EPPR=11.6962;GTI=0;LEN=4,1;MEANALT=2.42553,2.94643;MQM=59.9078,59.9771;MQMR=60;NS=94;NUMALT=2;ODDS=3.87812;PAIRED=0,0;PAIREDR=0;PAO=3.5,2.5;PQA=118.5,82.5;PQR=0;PRO=0;QA=611909,100259;QR=128;RO=4;RPL=9205,1426;RPP=86.4325,3.18252;RPPR=5.18177;RPR=8383,1411;RUN=1,1;SAF=9208,1426;SAP=87.6548,3.18252;SAR=8380,1411;SRF=1;SRP=5.18177;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:1,23,30:1:28:23,30:789,1047:-146.764,-83.0093,-78.3021,-61.9029,0,-55.0881	1/2:328:0,183,144:0:0:183,144:6305,5086:-926.281,-414.18,-359.092,-512.09,0,-468.742	1/2:344:1,195,148:1:29:195,148:6752,5229:-972.006,-423.6,-367.208,-546.458,0,-504.214	1/1:537:0,534,0:0:0:534,0:18596,0:-1672.24,-160.75,0,-1672.24,-160.75,-1672.24	1/1:125:0,125,0:0:0:125,0:4412,0:-396.322,-37.6288,0,-396.322,-37.6288,-396.322	1/1:124:0,124,0:0:0:124,0:4283,0:-385.636,-37.3277,0,-385.636,-37.3277,-385.636	1/1:399:0,397,1:0:0:397,1:13807,32:-1242.1,-119.509,0,-1239.52,-116.951,-1239.22	1/1:421:0,419,0:0:0:419,0:14543,0:-1308.4,-126.132,0,-1308.4,-126.132,-1308.4	1/1:256:0,254,1:0:0:254,1:8861,27:-796.08,-76.4616,0,-793.951,-74.3778,-793.65	1/1:212:0,212,0:0:0:212,0:7364,0:-662.757,-63.8184,0,-662.757,-63.8184,-662.757	1/1:147:0,143,2:0:0:143,2:5011,68:-450.785,-43.0473,0,-445.272,-37.5239,-444.67	1/2:200:0,101,98:0:0:101,98:3509,3404:-562.023,-276.748,-246.344,-285.301,0,-255.8	1/2:187:0,94,93:0:0:94,93:3280,3259:-531.208,-265.535,-237.238,-266.022,0,-238.026	1/1:153:0,152,0:0:0:152,0:5255,0:-472.797,-45.7566,0,-472.797,-45.7566,-472.797	1/1:146:0,145,1:0:0:145,1:5091,36:-457.283,-43.6494,0,-454.345,-40.3521,-454.044	1/1:166:0,165,1:0:0:165,1:5724,36:-514.931,-49.67,0,-511.994,-46.3727,-511.693	1/1:160:0,159,0:0:0:159,0:5556,0:-499.911,-47.8638,0,-499.911,-47.8638,-499.911	1/1:123:0,121,2:0:0:121,2:4264,72:-383.584,-36.4246,0,-377.71,-30.19,-377.107	1/2:125:0,53,72:0:0:53,72:1840,2529:-355.758,-206.185,-190.23,-149.921,0,-128.247	1/1:433:0,430,2:0:0:430,2:14976,68:-1347.01,-129.443,0,-1341.49,-123.927,-1340.89	1/1:367:0,365,0:0:0:365,0:12782,0:-1149.93,-109.876,0,-1149.93,-109.876,-1149.93	1/1:167:0,166,1:0:0:166,1:5738,32:-516.235,-49.971,0,-513.657,-47.0727,-513.356	1/1:176:0,174,0:0:0:174,0:6025,0:-541.994,-52.3792,0,-541.994,-52.3792,-541.994	1/1:236:0,236,0:0:0:236,0:8190,0:-737.137,-71.0431,0,-737.137,-71.0431,-737.137	1/1:188:0,186,2:0:0:186,2:6453,72:-580.483,-55.9916,0,-574.608,-49.7569,-574.006	1/2:651:0,320,329:0:0:320,329:11093,11741:-1858.9,-957.285,-860.955,-901.731,0,-802.692	1/1:494:0,490,3:0:0:490,3:17009,108:-1530.16,-147.505,0,-1521.35,-138.655,-1520.45	1/1:94:0,93,1:0:0:93,1:3230,36:-290.564,-27.9958,0,-287.626,-24.6985,-287.325	1/1:548:0,547,0:0:0:547,0:19095,0:-1717.71,-164.663,0,-1717.71,-164.663,-1717.71	1/1:243:0,234,8:0:0:234,8:8102,284:-728.869,-70.441,0,-705.728,-47.243,-703.32	1/1:289:0,286,1:0:0:286,1:9908,36:-890.971,-86.0946,0,-888.033,-83.1538,-887.732	1/2:12:0,5,7:0:0:5,7:168,244:-33.7955,-20.1922,-18.6871,-13.9444,0,-11.8372	1/1:28:0,28,0:0:0:28,0:970,0:-87.6104,-8.42884,0,-87.6104,-8.42884,-87.6104	1/1:6:0,6,0:0:0:6,0:209,0:-19.1504,-1.80618,0,-19.1504,-1.80618,-19.1504	1/1:22:0,22,0:0:0:22,0:763,0:-68.9889,-6.62266,0,-68.9889,-6.62266,-68.9889	1/1:26:0,26,0:0:0:26,0:902,0:-81.4926,-7.82678,0,-81.4926,-7.82678,-81.4926	1/1:475:0,471,2:0:0:471,2:16456,68:-1480.42,-141.785,0,-1474.9,-136.259,-1474.3	1/1:323:0,322,0:0:0:322,0:11234,0:-1010.67,-96.9317,0,-1010.67,-96.9317,-1010.67	1/2:165:0,87,77:0:0:87,77:3033,2691:-465.522,-218.895,-192.705,-246.618,0,-223.438	1/1:9:0,9,0:0:0:9,0:320,0:-29.1426,-2.70927,0,-29.1426,-2.70927,-29.1426	1/2:312:0,185,122:0:0:185,122:6409,4311:-871.561,-351.117,-295.426,-520.469,0,-483.744	1/2:88:0,38,50:0:0:38,50:1355,1774:-255.345,-144.89,-133.451,-110.811,0,-95.7591	1/1:224:0,221,1:0:0:221,1:7641,36:-687.415,-66.5276,0,-684.477,-63.5619,-684.176	1/1:195:1,192,0:1:35:192,0:6705,0:-600.068,-54.9367,0,-600.369,-57.7978,-603.217	1/1:130:0,129,0:0:0:129,0:4485,0:-403.145,-38.8329,0,-403.145,-38.8329,-403.145	1/1:151:0,150,0:0:0:150,0:5192,0:-467.162,-45.1545,0,-467.162,-45.1545,-467.162	1/1:272:0,270,0:0:0:270,0:9248,0:-831.968,-81.2781,0,-831.968,-81.2781,-831.968	1/1:389:0,384,1:0:0:384,1:13361,36:-1202.02,-115.596,0,-1199.08,-112.645,-1198.78	1/1:243:0,242,0:0:0:242,0:8417,0:-757.172,-72.8493,0,-757.172,-72.8493,-757.172	1/2:373:0,169,201:0:0:169,201:5900,7092:-1057.4,-577.496,-526.622,-479.91,0,-419.403	1/1:334:0,327,3:0:0:327,3:11411,108:-1026.56,-98.4368,0,-1017.74,-89.6128,-1016.84	1/1:16:0,16,0:0:0:16,0:557,0:-50.4569,-4.81648,0,-50.4569,-4.81648,-50.4569	1/2:268:1,145,120:1:36:145,120:5074,4246:-755.447,-342.939,-302.227,-409.903,0,-376.717	1/1:87:0,86,0:0:0:86,0:3011,0:-270.982,-25.8886,0,-270.982,-25.8886,-270.982	1/1:41:0,41,0:0:0:41,0:1411,0:-127.254,-12.3422,0,-127.254,-12.3422,-127.254	1/2:315:0,156,158:0:0:156,158:5355,5585:-889.661,-454.874,-407.914,-434.794,0,-387.232	1/2:157:0,90,67:0:0:90,67:3139,2379:-449.481,-194.199,-167.106,-255.634,0,-235.465	1/1:13:0,12,1:0:0:12,1:421,36:-37.8654,-3.61236,0,-34.9273,-0.315115,-34.6263	1/1:30:0,30,0:0:0:30,0:1064,0:-96.0714,-9.0309,0,-96.0714,-9.0309,-96.0714	1/1:233:0,233,0:0:0:233,0:8073,0:-725.68,-70.14,0,-725.68,-70.14,-725.68	1/1:254:0,252,1:0:0:252,1:8764,32:-788.433,-75.8596,0,-785.854,-73.3012,-785.553	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:363:0,360,0:0:0:360,0:12523,0:-1126.54,-108.371,0,-1126.54,-108.371,-1126.54	1/1:444:0,434,4:0:0:434,4:15141,144:-1362.14,-130.647,0,-1350.39,-118.875,-1349.18	1/1:167:0,156,11:0:0:156,11:5386,388:-484.532,-46.9607,0,-452.939,-15.0152,-449.627	1/1:230:0,230,0:0:0:230,0:7893,0:-710.264,-69.2369,0,-710.264,-69.2369,-710.264	1/1:336:0,332,3:0:0:332,3:11489,108:-1033.59,-99.942,0,-1024.77,-91.0938,-1023.87	1/2:236:0,77,159:0:0:77,159:2705,5615:-677.77,-457.607,-434.428,-220.514,0,-172.65	1/1:84:0,83,1:0:0:83,1:2921,36:-262.731,-24.9855,0,-259.795,-21.69,-259.494	1/1:171:0,170,1:0:0:170,1:5879,36:-528.883,-51.1751,0,-525.945,-47.8779,-525.644	1/2:196:0,86,109:0:0:86,109:3011,3883:-561.434,-316.451,-290.562,-244.936,0,-212.124	1/1:66:0,62,4:0:0:62,4:2123,144:-190.965,-18.6639,0,-179.214,-6.55436,-178.01	1/1:202:0,201,0:0:0:201,0:6947,0:-624.96,-60.507,0,-624.96,-60.507,-624.96	1/1:171:0,171,0:0:0:171,0:5956,0:-536.164,-51.4761,0,-536.164,-51.4761,-536.164	1/1:497:0,495,2:0:0:495,2:17224,72:-1549.15,-149.01,0,-1543.28,-142.775,-1542.67	1/1:301:0,300,1:0:0:300,1:10506,36:-945.002,-90.309,0,-942.064,-87.0118,-941.763	1/2:215:0,115,100:0:0:115,100:4054,3556:-620.226,-290.147,-255.529,-330.432,0,-300.329	1/2:286:0,130,155:0:0:130,155:4485,5458:-808.749,-444.402,-405.268,-364.404,0,-317.745	1/1:21:0,21,0:0:0:21,0:742,0:-67.1039,-6.32163,0,-67.1039,-6.32163,-67.1039	1/1:245:0,242,1:0:0:242,1:8473,36:-762.172,-72.8493,0,-759.235,-69.9118,-758.934	1/1:292:0,291,0:0:0:291,0:10032,0:-902.553,-87.5997,0,-902.553,-87.5997,-902.553	1/1:532:0,527,2:0:0:527,2:18410,72:-1656.19,-158.643,0,-1650.32,-152.759,-1649.72	1/1:215:0,214,0:0:0:214,0:7503,0:-675.039,-64.4204,0,-675.039,-64.4204,-675.039	1/2:138:0,62,75:0:0:62,75:2178,2630:-391.37,-214.098,-195.434,-177.351,0,-154.774	1/2:177:0,84,92:0:0:84,92:2960,3253:-505.933,-264.937,-239.65,-240.989,0,-213.294	1/2:308:0,162,142:0:0:162,142:5579,5056:-865.272,-412.138,-363.371,-453.183,0,-410.437	1/1:102:0,102,0:0:0:102,0:3578,0:-322.225,-30.7051,0,-322.225,-30.7051,-322.225	1/1:176:0,175,1:0:0:175,1:6118,36:-550.371,-52.6803,0,-547.434,-49.383,-547.133	1/1:155:0,155,0:0:0:155,0:5444,0:-490.099,-46.6597,0,-490.099,-46.6597,-490.099	1/2:100:0,56,42:0:0:56,42:1980,1491:-282.741,-121.481,-104.623,-161.255,0,-148.612	1/2:169:0,91,78:0:0:91,78:3160,2749:-481.051,-224.17,-196.776,-257.231,0,-233.75	1/2:155:0,53,102:0:0:53,102:1861,3584:-443.529,-292.065,-276.111,-151.815,0,-121.109	1/1:225:0,223,1:0:0:223,1:7750,36:-696.665,-67.1297,0,-693.727,-64.1374,-693.426	1/1:254:0,254,0:0:0:254,0:8863,0:-797.669,-76.4616,0,-797.669,-76.4616,-797.669
chr03	19803511	.	C	G	326270	PASS	AB=0.48118;ABP=18.1311;AC=162;AF=0.861702;AN=188;AO=14784;CIGAR=1X;DP=17379;DPB=17379;DPRA=0;EPP=32106.1;EPPR=5611.92;GTI=1;LEN=1;MEANALT=1.11702;MQM=59.7006;MQMR=59.9675;NS=94;NUMALT=1;ODDS=1.06078;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=528770;QR=92307;RO=2583;RPL=14784;RPP=32106.1;RPPR=5611.92;RPR=0;RUN=1;SAF=14784;SAP=32106.1;SAR=0;SRF=2583;SRP=5611.92;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:14,19:14:504:19:680:-51.5788,0,-35.7641	0/1:384:209,175:209:7461:175:6292:-450.737,0,-555.933	0/1:106:61,45:61:2173:45:1595:-111.875,0,-163.926	1/1:154:0,153:0:0:153:5487:-493.589,-46.0576,0	1/1:42:0,42:0:0:42:1502:-135.473,-12.6433,0	1/1:12:0,12:0:0:12:432:-39.1848,-3.61236,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:153:0,153:0:0:153:5465:-491.899,-46.0576,0	1/1:57:0,57:0:0:57:2025:-182.512,-17.1587,0	1/1:100:0,99:0:0:99:3538:-318.159,-29.802,0	1/1:335:0,335:0:0:335:11939:-1074.17,-100.845,0	0/1:36:16,20:16:576:20:720:-54.2917,0,-41.3379	0/1:51:25,26:25:900:26:936:-69.1988,0,-65.9685	1/1:47:0,47:0:0:47:1669:-150.478,-14.1484,0	1/1:46:0,46:0:0:46:1624:-146.443,-13.8474,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:44:0,44:0:0:44:1576:-142.125,-13.2453,0	1/1:50:0,50:0:0:50:1791:-161.425,-15.0515,0	0/1:147:72,75:72:2563:75:2688:-197.881,0,-186.669	1/1:105:0,105:0:0:105:3761:-338.673,-31.6082,0	1/1:104:1,103:1:36:103:3675:-327.355,-27.7088,0	1/1:90:0,90:0:0:90:3232:-291.08,-27.0927,0	1/1:35:0,35:0:0:35:1260:-113.695,-10.5361,0	1/1:61:1,60:1:36:60:2152:-190.344,-14.7646,0	1/1:36:1,35:1:36:35:1260:-110.103,-7.23881,0	0/1:256:131,125:131:4673:125:4474:-325.715,0,-343.665	1/1:140:0,140:0:0:140:5000:-450.122,-42.1442,0	1/1:27:0,27:0:0:27:960:-86.7157,-8.12781,0	1/1:238:0,238:0:0:238:8491:-764.177,-71.6451,0	1/1:410:15,395:15:536:395:14163:-1225.79,-74.8475,0	1/1:70:0,70:0:0:70:2505:-225.692,-21.0721,0	0/1:742:426,315:426:15260:315:11278:-791.397,0,-1149.68	1/1:593:1,592:1:36:592:21165:-1900.55,-174.913,0	1/1:643:0,643:0:0:643:22919:-2061.22,-193.562,0	1/1:658:0,658:0:0:658:23516:-2115.13,-198.078,0	1/1:471:0,471:0:0:471:16836:-1514.11,-141.785,0	1/1:126:1,125:1:36:125:4469:-398.772,-34.3315,0	1/1:237:2,234:2:72:234:8379:-747.129,-64.5662,0	0/1:330:181,149:181:6493:149:5308:-378.501,0,-485.11	1/1:325:0,325:0:0:325:11649:-1048.18,-97.8348,0	0/1:85:46,39:46:1652:39:1400:-100.705,0,-123.381	0/1:166:95,71:95:3399:71:2529:-177.873,0,-256.153	1/1:78:0,78:0:0:78:2787:-251.051,-23.4803,0	1/1:40:0,40:0:0:40:1436:-129.53,-12.0412,0	1/1:33:0,33:0:0:33:1184:-106.866,-9.93399,0	1/1:64:0,64:0:0:64:2293:-206.629,-19.2659,0	1/1:111:0,111:0:0:111:3981:-358.406,-33.4143,0	1/1:56:0,56:0:0:56:2008:-180.991,-16.8577,0	1/1:67:0,67:0:0:67:2404:-216.607,-20.169,0	0/1:95:58,37:58:2060:37:1328:-91.2244,0,-157.071	1/1:109:0,109:0:0:109:3863:-347.8,-32.8123,0	1/1:950:0,950:0:0:950:33953:-3054.09,-285.979,0	0/1:152:67,85:67:2396:85:3052:-229.152,0,-170.01	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	1/1:631:0,630:0:0:630:22522:-2025.64,-189.649,0	0/1:101:37,64:37:1306:64:2287:-175.682,0,-87.4359	0/1:34:19,15:19:675:15:540:-38.7015,0,-50.8419	0/1:711:356,355:356:12714:355:12700:-928.65,0,-930.047	1/1:896:0,896:0:0:896:32110:-2888.4,-269.723,0	1/1:37:0,37:0:0:37:1324:-119.444,-11.1381,0	1/1:53:1,52:1:36:52:1864:-164.423,-12.3563,0	1/1:433:1,432:1:32:432:15487:-1390.18,-127.147,0	1/1:166:1,163:1:36:163:5806:-519.029,-46.1305,0	1/1:123:2,121:2:72:121:4356:-385.364,-30.19,0	1/1:75:4,70:4:144:70:2498:-211.753,-9.32243,0	1/1:65:0,65:0:0:65:2332:-210.136,-19.567,0	1/1:219:2,216:2:68:216:7724:-688.684,-59.52,0	0/1:74:54,20:54:1936:20:720:-42.8526,0,-152.24	1/1:174:1,173:1:36:173:6205:-554.841,-48.7809,0	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	0/1:57:34,23:34:1220:23:820:-56.9629,0,-92.9481	1/1:826:1,823:1:36:823:29435:-2644.12,-244.81,0	1/1:41:0,41:0:0:41:1449:-130.687,-12.3422,0	1/1:49:0,49:0:0:49:1764:-159.036,-14.7505,0	1/1:90:0,90:0:0:90:3236:-291.447,-27.0927,0	1/1:126:0,126:0:0:126:4524:-407.318,-37.9298,0	0/1:88:38,50:38:1368:50:1783:-134.245,0,-96.9302	0/1:72:31,41:31:1112:41:1476:-111.454,0,-78.7172	1/1:853:0,853:0:0:853:30484:-2742.1,-256.779,0	1/1:88:0,88:0:0:88:3145:-283.272,-26.4906,0	1/1:86:0,86:0:0:86:3080:-277.418,-25.8886,0	1/1:160:0,160:0:0:160:5698:-512.915,-48.1648,0	1/1:78:0,78:0:0:78:2767:-249.258,-23.4803,0	0/1:32:11,21:11:388:21:756:-58.7343,0,-25.6244	0/1:49:21,28:21:752:28:1008:-76.2835,0,-53.2558	0/1:94:44,50:44:1576:50:1792:-133.261,0,-113.835	1/1:27:0,27:0:0:27:972:-87.7816,-8.12781,0	1/1:62:0,62:0:0:62:2202:-198.422,-18.6639,0	1/1:38:0,38:0:0:38:1368:-123.417,-11.4391,0	0/1:312:135,177:135:4839:177:6337:-476.462,0,-341.737	0/1:656:328,327:328:11680:327:11693:-854.612,0,-853.557	0/1:52:39,13:39:1383:13:464:-26.4412,0,-109.115	1/1:7:0,7:0:0:7:252:-23.0266,-2.10721,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0
chr03	19803608	.	T	A	7225.26	PASS	AB=0.50241;ABP=3.10451;AC=27;AF=0.143617;AN=188;AO=955;CIGAR=1X;DP=7334;DPB=7334;DPRA=0.925612;EPP=2076.77;EPPR=13336.4;GTI=1;LEN=1;MEANALT=1.03125;MQM=26.2953;MQMR=38.4363;NS=94;NUMALT=1;ODDS=2.34313;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33941;QR=228482;RO=6378;RPL=0;RPP=2076.77;RPPR=13336.4;RPR=955;RUN=1;SAF=0;SAP=2076.77;SAR=955;SRF=0;SRP=13852.7;SRR=6378;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:51,30:51:1832:30:1067:-39.3395,0,-127.031	0/1:17:8,9:8:288:9:324:-13.4725,0,-18.6038	0/1:152:84,68:84:3016:68:2431:-97.7261,0,-201.503	0/0:232:232,0:232:8308:0:0:0,-69.839,-714.431	0/0:103:103,0:103:3683:0:0:0,-31.0061,-311.826	0/0:41:41,0:41:1457:0:0:0,-12.3422,-120.289	0/0:83:83,0:83:2953:0:0:0,-24.9855,-252.21	0/0:79:78,1:78:2792:1:36:0,-21.4078,-224.849	0/0:123:123,0:123:4405:0:0:0,-37.0267,-360.077	0/0:66:65,1:65:2325:1:36:0,-16.9652,-196.821	0/0:19:19,0:19:680:0:0:0,-5.71957,-59.031	0/1:72:37,35:37:1332:35:1201:-52.8103,0,-88.2862	0/1:71:33,38:33:1180:38:1347:-59.3726,0,-75.8921	0/0:36:36,0:36:1296:0:0:0,-10.8371,-108.504	0/0:48:48,0:48:1728:0:0:0,-14.4494,-146.327	0/0:34:34,0:34:1220:0:0:0,-10.235,-101.3	0/0:12:12,0:12:432:0:0:0,-3.61236,-35.8582	0/0:25:25,0:25:900:0:0:0,-7.52575,-73.4449	0/1:17:10,7:10:360:7:237:-9.48868,0,-24.0614	0/0:141:141,0:141:5057:0:0:0,-42.4452,-433.777	0/0:124:124,0:124:4452:0:0:0,-37.3277,-372.51	0/0:99:99,0:99:3544:0:0:0,-29.802,-309.247	0/0:97:97,0:97:3461:0:0:0,-29.1999,-295.71	0/0:105:105,0:105:3760:0:0:0,-31.6081,-317.346	0/0:108:108,0:108:3876:0:0:0,-32.5112,-322.453	0/1:256:109,147:109:3896:147:5227:-299.538,0,-260.864	0/0:252:252,0:252:9020:0:0:0,-75.8596,-757.687	0/0:31:31,0:31:1116:0:0:0,-9.33193,-94.5173	0/0:269:269,0:269:9656:0:0:0,-80.9771,-841.61	0/0:58:57,1:57:2048:1:36:0,-14.901,-170.311	0/0:109:109,0:109:3900:0:0:0,-32.8123,-334.532	0/1:11:2,9:2:72:9:324:-17.5028,0,-3.12511	0/0:15:15,0:15:540:0:0:0,-4.51545,-46.0714	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.07357	0/0:5:5,0:5:176:0:0:0,-1.50515,-14.9506	0/0:7:7,0:7:252:0:0:0,-2.10721,-20.2676	0/0:115:115,0:115:4128:0:0:0,-34.6184,-354.383	0/0:133:133,0:133:4727:0:0:0,-40.037,-395.756	0/1:26:15,11:15:540:11:396:-15.8225,0,-36.6807	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.48528	0/1:180:109,71:109:3912:71:2528:-107.393,0,-272.542	0/1:11:3,8:3:108:8:288:-15.3672,0,-5.40032	0/0:200:200,0:200:7180:0:0:0,-60.206,-598.966	0/0:31:31,0:31:1116:0:0:0,-9.33193,-95.0586	0/0:30:30,0:30:1080:0:0:0,-9.0309,-92.329	0/0:125:125,0:125:4488:0:0:0,-37.6287,-390.545	0/0:76:76,0:76:2720:0:0:0,-22.8783,-216.461	0/0:178:178,0:178:6400:0:0:0,-53.5833,-548.725	0/0:114:114,0:114:4100:0:0:0,-34.3174,-350.865	0/1:66:32,34:32:1148:34:1207:-62.5543,0,-78.3372	0/0:172:172,0:172:6164:0:0:0,-51.7772,-535.265	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.1087	0/1:141:82,59:82:2937:59:2120:-82.8477,0,-199.834	0/0:32:32,0:32:1148:0:0:0,-9.63296,-98.1117	0/0:9:9,0:9:320:0:0:0,-2.70927,-26.2676	0/1:121:65,56:65:2317:56:1978:-92.4023,0,-158.065	0/1:64:29,35:29:1044:35:1234:-66.1281,0,-69.7906	1/1:4:0,4:0:0:4:144:-10.7402,-1.20412,0	0/0:21:21,0:21:756:0:0:0,-6.32163,-66.6331	0/0:91:91,0:91:3264:0:0:0,-27.3937,-272.562	0/0:35:33,1:33:1169:1:36:0,-7.78077,-98.5845	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.0097	0/0:102:102,0:102:3649:0:0:0,-30.7051,-319.136	0/0:105:105,0:105:3749:0:0:0,-31.6081,-321.694	0/0:85:77,8:77:2764:8:288:0,-6.90899,-212.6	0/0:77:77,0:77:2760:0:0:0,-23.1793,-236.659	0/0:101:101,0:101:3613:0:0:0,-30.404,-309.356	0/1:118:32,86:32:1148:86:3064:-174.812,0,-64.0257	0/0:12:12,0:12:432:0:0:0,-3.61236,-37.071	0/0:37:37,0:37:1324:0:0:0,-11.1381,-108.257	0/1:28:15,13:15:536:13:464:-25.7194,0,-38.7805	0/0:28:28,0:28:1004:0:0:0,-8.42884,-86.2411	0/0:177:176,1:176:6274:1:36:0,-49.8947,-503.499	0/0:90:90,0:90:3223:0:0:0,-27.0927,-263.359	0/0:124:124,0:124:4444:0:0:0,-37.3277,-373.02	0/0:143:143,0:143:5124:0:0:0,-43.0473,-436.191	0/1:113:60,53:60:2148:53:1900:-78.4257,0,-142.013	0/1:67:35,32:35:1252:32:1124:-47.8471,0,-82.5243	0/0:13:13,0:13:468:0:0:0,-3.91339,-38.769	0/0:117:117,0:117:4162:0:0:0,-35.2205,-351.721	0/0:91:91,0:91:3260:0:0:0,-27.3937,-268.151	0/0:229:229,0:229:8201:0:0:0,-68.9359,-696.8	0/0:37:37,0:37:1328:0:0:0,-11.1381,-115.032	0/1:48:27,21:27:964:21:748:-37.151,0,-68.835	0/1:25:7,18:7:252:18:644:-36.8398,0,-14.5218	0/1:81:44,37:44:1568:37:1313:-65.2095,0,-110.336	0/0:15:15,0:15:536:0:0:0,-4.51545,-42.2059	0/0:38:38,0:38:1364:0:0:0,-11.4391,-112.03	0/0:47:47,0:47:1692:0:0:0,-14.1484,-138.765	0/1:22:11,11:11:396:11:388:-18.8629,0,-27.0871	0/1:46:21,25:21:752:25:892:-43.6255,0,-49.3263	0/1:33:8,25:8:288:25:883:-50.8708,0,-14.6284	0/0:18:18,0:18:644:0:0:0,-5.41854,-53.3895	0/0:74:74,0:74:2664:0:0:0,-22.2762,-228.879
chr03	19803613	.	G	A,T	142480	PASS	AB=0.494933,0.505067;ABP=3.42838,3.42838;AC=161,27;AF=0.856383,0.143617;AN=188;AO=6334,963;CIGAR=1X,1X;DP=7297;DPB=7297;DPRA=19.6048,0.897293;EPP=13661.7,2094.14;EPPR=0;GTI=1;LEN=1,1;MEANALT=1.32258,1.96774;MQM=38.3363,26.298;MQMR=0;NS=94;NUMALT=2;ODDS=3.73312;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=226683,34528;QR=0;RO=0;RPL=6323,963;RPP=13661.7,2094.14;RPPR=0;RPR=11,0;RUN=1,1;SAF=0,0;SAP=13757.1,2094.14;SAR=6334,963;SRF=0;SRP=0;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:79:0,49,30:0:0:49,30:1745,1080:-183.258,-54.8606,-40.1101,-128.667,0,-119.636	1/2:17:0,8,9:0:0:8,9:288,324:-36.9151,-15.8808,-13.4725,-21.3131,0,-18.6038	1/2:149:0,82,67:0:0:82,67:2948,2404:-338.479,-121.312,-96.6276,-217.443,0,-197.274	1/1:230:0,230,0:0:0:230,0:8245,0:-708.44,-69.2369,0,-708.44,-69.2369,-708.44	1/1:100:0,100,0:0:0:100,0:3596,0:-304.393,-30.103,0,-304.393,-30.103,-304.393	1/1:40:0,40,0:0:0:40,0:1425,0:-117.541,-12.0412,0,-117.541,-12.0412,-117.541	1/1:86:0,86,0:0:0:86,0:3092,0:-262.21,-25.8886,0,-262.21,-25.8886,-262.21	1/1:77:0,76,1:0:0:76,1:2719,36:-221.867,-22.8783,0,-220.033,-20.8058,-219.732	1/1:122:0,122,0:0:0:122,0:4365,0:-357.135,-36.7257,0,-357.135,-36.7257,-357.135	1/1:67:0,67,0:0:0:67,0:2412,0:-206.67,-20.169,0,-206.67,-20.169,-206.67	1/1:19:0,19,0:0:0:19,0:672,0:-58.4546,-5.71957,0,-58.4546,-5.71957,-58.4546	1/2:72:0,36,36:0:0:36,36:1296,1288:-162.597,-66.7273,-55.8902,-96.1541,0,-85.3171	1/2:72:0,32,40:0:0:32,40:1152,1440:-157.684,-72.8657,-63.2328,-85.1046,0,-73.0634	1/1:37:0,37,0:0:0:37,0:1328,0:-110.518,-11.1381,0,-110.518,-11.1381,-110.518	1/1:47:0,47,0:0:0:47,0:1684,0:-142.514,-14.1484,0,-142.514,-14.1484,-142.514	1/1:35:0,35,0:0:0:35,0:1256,0:-103.565,-10.5361,0,-103.565,-10.5361,-103.565	1/1:12:0,12,0:0:0:12,0:432,0:-35.8582,-3.61236,0,-35.8582,-3.61236,-35.8582	1/1:23:0,23,0:0:0:23,0:828,0:-67.5234,-6.92369,0,-67.5234,-6.92369,-67.5234	1/2:17:0,10,7:0:0:10,7:360,248:-38.7742,-12.8753,-9.86502,-26.1686,0,-24.0614	1/1:143:0,143,0:0:0:143,0:5072,0:-436.238,-43.0473,0,-436.238,-43.0473,-436.238	1/1:119:0,119,0:0:0:119,0:4239,0:-355.315,-35.8226,0,-355.315,-35.8226,-355.315	1/1:99:0,99,0:0:0:99,0:3525,0:-307.836,-29.802,0,-307.836,-29.802,-307.836	1/1:96:0,96,0:0:0:96,0:3441,0:-294.821,-28.8989,0,-294.821,-28.8989,-294.821	1/1:104:0,104,0:0:0:104,0:3729,0:-313.958,-31.3071,0,-313.958,-31.3071,-313.958	1/1:108:0,108,0:0:0:108,0:3865,0:-321.734,-32.5112,0,-321.734,-32.5112,-321.734	1/2:259:0,110,149:0:0:110,149:3937,5337:-645.389,-337.449,-304.336,-308.259,0,-263.405	1/1:246:0,246,0:0:0:246,0:8806,0:-739.479,-74.0534,0,-739.479,-74.0534,-739.479	1/1:30:0,30,0:0:0:30,0:1080,0:-91.4684,-9.0309,0,-91.4684,-9.0309,-91.4684	1/1:267:0,267,0:0:0:267,0:9566,0:-833.853,-80.375,0,-833.853,-80.375,-833.853	1/1:57:0,56,1:0:0:56,1:1993,36:-167.928,-16.8577,0,-165.928,-14.6,-165.627	1/1:106:0,106,0:0:0:106,0:3774,0:-323.569,-31.9092,0,-323.569,-31.9092,-323.569	1/2:9:0,2,7:0:0:2,7:72,252:-19.7826,-14.2685,-13.6665,-5.83438,0,-3.72717	1/1:15:0,15,0:0:0:15,0:540,0:-46.0714,-4.51545,0,-46.0714,-4.51545,-46.0714	1/1:3:0,3,0:0:0:3,0:108,0:-9.07357,-0.90309,0,-9.07357,-0.90309,-9.07357	1/1:5:0,5,0:0:0:5,0:180,0:-15.1755,-1.50515,0,-15.1755,-1.50515,-15.1755	1/1:7:0,7,0:0:0:7,0:252,0:-20.2676,-2.10721,0,-20.2676,-2.10721,-20.2676	1/1:113:0,113,0:0:0:113,0:4049,0:-347.616,-34.0164,0,-347.616,-34.0164,-347.616	1/1:132:0,132,0:0:0:132,0:4717,0:-395.84,-39.736,0,-395.84,-39.736,-395.84	1/2:26:0,15,11:0:0:15,11:540,392:-60.0214,-20.3041,-15.7887,-39.992,0,-36.6807	1/1:4:0,4,0:0:0:4,0:144,0:-12.4033,-1.20412,0,-12.4033,-1.20412,-12.4033	1/2:182:0,109,73:0:0:109,73:3924,2628:-438.522,-144.361,-111.549,-294.446,0,-272.471	1/2:11:0,3,8:0:0:3,8:108,288:-23.7828,-16.2703,-15.3672,-7.80856,0,-5.40032	1/1:198:0,198,0:0:0:198,0:7059,0:-590.439,-59.6039,0,-590.439,-59.6039,-590.439	1/1:31:0,31,0:0:0:31,0:1112,0:-94.7711,-9.33193,0,-94.7711,-9.33193,-94.7711	1/1:30:0,30,0:0:0:30,0:1065,0:-91.6835,-9.0309,0,-91.6835,-9.0309,-91.6835	1/1:122:0,122,0:0:0:122,0:4364,0:-380.126,-36.7257,0,-380.126,-36.7257,-380.126	1/1:76:0,76,0:0:0:76,0:2728,0:-216.902,-22.8783,0,-216.902,-22.8783,-216.902	1/1:178:0,178,0:0:0:178,0:6364,0:-545.839,-53.5833,0,-545.839,-53.5833,-545.839	1/1:113:0,113,0:0:0:113,0:4037,0:-345.843,-34.0164,0,-345.843,-34.0164,-345.843	1/2:66:0,30,36:0:0:30,36:1076,1296:-159.288,-76.7697,-67.7388,-82.8259,0,-71.9888	1/1:174:0,174,0:0:0:174,0:6240,0:-541.849,-52.3792,0,-541.849,-52.3792,-541.849	1/1:7:0,7,0:0:0:7,0:248,0:-21.8177,-2.10721,0,-21.8177,-2.10721,-21.8177	1/2:144:0,84,60:0:0:84,60:2975,2160:-329.424,-109.401,-84.1143,-220.296,0,-202.234	1/1:32:0,32,0:0:0:32,0:1137,0:-97.1425,-9.63296,0,-97.1425,-9.63296,-97.1425	1/1:8:0,8,0:0:0:8,0:288,0:-23.2473,-2.40824,0,-23.2473,-2.40824,-23.2473	1/2:123:0,68,55:0:0:68,55:2444,1980:-294.888,-110.769,-90.2987,-184.411,0,-167.854	1/2:63:0,30,33:0:0:30,33:1065,1188:-152.776,-71.2843,-62.2534,-81.7967,0,-71.8627	2/2:4:0,0,4:0:0:0,4:0,144:-10.7402,-10.7402,-10.7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chr03	19996165	.	C	T	15311.8	PASS	AB=0.563197;ABP=59.0004;AC=24;AF=0.131868;AN=182;AO=920;CIGAR=1X;DP=5718;DPB=5718;DPRA=1.25311;EPP=2000.76;EPPR=10413.1;GTI=2;LEN=1;MEANALT=1;MQM=51.35;MQMR=33.6082;NS=91;NUMALT=1;ODDS=0.0429204;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32525;QR=171150;RO=4798;RPL=0;RPP=2000.76;RPPR=10421.7;RPR=920;RUN=1;SAF=0;SAP=2000.76;SAR=920;SRF=1;SRP=10413.1;SRR=4797;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:19,20:19:684:20:699:-51.3497,0,-43.087	0/1:119:44,75:44:1568:75:2660:-202.36,0,-90.0044	0/1:61:24,37:24:864:37:1315:-99.7152,0,-50.8086	0/0:151:151,0:151:5398:0:0:0,-45.4555,-412.401	0/0:21:21,0:21:756:0:0:0,-6.32163,-63.5768	0/0:32:32,0:32:1148:0:0:0,-9.63296,-90.9144	0/0:50:50,0:50:1784:0:0:0,-15.0515,-136.238	0/0:79:79,0:79:2797:0:0:0,-23.7814,-221.274	0/0:76:76,0:76:2657:0:0:0,-22.8783,-212.2	0/0:78:78,0:78:2787:0:0:0,-23.4803,-213.835	0/0:17:17,0:17:603:0:0:0,-5.11751,-46.6108	0/0:48:48,0:48:1712:0:0:0,-14.4494,-137.24	0/1:46:24,22:24:852:22:765:-54.989,0,-54.7817	0/0:30:30,0:30:1056:0:0:0,-9.0309,-89.242	0/0:48:48,0:48:1724:0:0:0,-14.4494,-132.892	0/0:36:36,0:36:1288:0:0:0,-10.8371,-108.271	0/0:50:50,0:50:1766:0:0:0,-15.0515,-140.872	0/0:46:46,0:46:1640:0:0:0,-13.8474,-131.565	0/1:20:8,12:8:284:12:424:-32.2667,0,-17.0666	0/0:101:101,0:101:3595:0:0:0,-30.404,-276.205	0/0:78:78,0:78:2796:0:0:0,-23.4803,-232.944	0/0:59:59,0:59:2100:0:0:0,-17.7608,-164.741	0/0:47:47,0:47:1692:0:0:0,-14.1484,-130.193	0/0:76:76,0:76:2711:0:0:0,-22.8783,-227.583	0/0:28:28,0:28:987:0:0:0,-8.42884,-83.4482	0/1:254:124,130:124:4440:130:4591:-335.745,0,-274.634	0/0:82:82,0:82:2940:0:0:0,-24.6845,-245.515	0/0:11:11,0:11:396:0:0:0,-3.31133,-33.4615	0/0:101:101,0:101:3594:0:0:0,-30.404,-284.851	0/0:123:122,1:122:4349:1:36:0,-33.4353,-358.933	0/0:112:112,0:112:3986:0:0:0,-33.7154,-302.994	0/1:7:1,6:1:36:6:208:-16.9217,0,-1.23894	0/0:5:5,0:5:171:0:0:0,-1.50515,-13.9509	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.7942	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.05649	.:.:.:.:.:.:.:.	0/0:145:145,0:145:5195:0:0:0,-43.6493,-412.259	0/0:130:130,0:130:4632:0:0:0,-39.1339,-386.14	0/1:28:14,14:14:504:14:500:-36.618,0,-31.1428	.:.:.:.:.:.:.:.	0/1:100:46,54:46:1639:54:1891:-138.726,0,-106.674	0/1:16:7,9:7:252:9:320:-24.2734,0,-16.5989	0/0:95:95,0:95:3399:0:0:0,-28.5978,-278.848	0/0:40:40,0:40:1428:0:0:0,-12.0412,-109.027	0/0:41:41,0:41:1459:0:0:0,-12.3422,-113.232	0/0:77:77,0:77:2727:0:0:0,-23.1793,-216.818	0/0:61:61,0:61:2171:0:0:0,-18.3628,-173.062	0/0:112:112,0:112:3982:0:0:0,-33.7154,-306.542	0/0:97:97,0:97:3429:0:0:0,-29.1999,-265.407	0/1:90:36,54:36:1288:54:1914:-144.612,0,-72.4256	0/0:104:104,0:104:3709:0:0:0,-31.3071,-292.976	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.55851	0/1:100:55,45:55:1950:45:1586:-112.41,0,-125.007	0/0:20:20,0:20:720:0:0:0,-6.0206,-56.5461	0/0:12:12,0:12:432:0:0:0,-3.61236,-34.7451	0/1:97:44,53:44:1572:53:1888:-140.182,0,-101.975	0/1:54:17,37:17:608:37:1314:-101.359,0,-30.9076	.:.:.:.:.:.:.:.	0/0:13:13,0:13:460:0:0:0,-3.91339,-36.8216	0/0:34:34,0:34:1216:0:0:0,-10.235,-101.453	0/0:60:60,0:60:2131:0:0:0,-18.0618,-164.017	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.3018	0/0:146:146,0:146:5181:0:0:0,-43.9504,-409.877	0/0:204:200,4:200:7134:4:140:0,-48.4981,-532.632	0/0:51:47,4:47:1684:4:129:0,-3.44699,-126.853	0/0:56:56,0:56:1999:0:0:0,-16.8577,-150.465	0/0:122:122,0:122:4376:0:0:0,-36.7257,-330.259	0/1:135:36,99:36:1292:99:3517:-274.675,0,-57.008	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.1481	0/0:67:67,0:67:2386:0:0:0,-20.169,-190.403	0/1:63:31,32:31:1108:32:1126:-82.4517,0,-69.7405	0/0:19:19,0:19:680:0:0:0,-5.71957,-52.186	0/0:56:55,1:55:1968:1:36:0,-13.2685,-152.775	0/0:32:32,0:32:1144:0:0:0,-9.63296,-91.641	0/0:65:64,1:64:2291:1:36:0,-15.9755,-187.256	0/0:102:102,0:102:3648:0:0:0,-30.7051,-280.638	0/1:51:23,28:23:820:28:999:-74.5522,0,-46.5913	0/1:67:29,38:29:1044:38:1325:-99.109,0,-62.4393	0/0:8:8,0:8:279:0:0:0,-2.40824,-22.7527	0/0:57:57,0:57:2044:0:0:0,-17.1587,-169.202	0/0:60:60,0:60:2147:0:0:0,-18.0618,-170.858	0/0:106:106,0:106:3775:0:0:0,-31.9092,-289.874	0/0:72:72,0:72:2571:0:0:0,-21.6742,-197.301	0/1:43:24,19:24:856:19:680:-48.3632,0,-52.1575	0/1:53:28,25:28:1004:25:888:-63.786,0,-61.1848	0/1:110:47,63:47:1680:63:2232:-167.282,0,-95.4541	0/0:24:24,0:24:864:0:0:0,-7.22472,-68.7197	0/0:46:46,0:46:1652:0:0:0,-13.8474,-131.15	0/0:37:37,0:37:1332:0:0:0,-11.1381,-106.467	0/1:12:5,7:5:180:7:252:-19.3727,0,-11.7799	0/1:25:9,16:9:320:16:564:-43.4779,0,-19.6708	0/1:24:10,14:10:360:14:490:-37.0634,0,-19.2328	0/0:70:70,0:70:2483:0:0:0,-21.0721,-190.152	0/0:60:60,0:60:2140:0:0:0,-18.0618,-159.027
chr03	19996176	.	ACATTTT	TTATTTCTC,ATATTTT	105887	PASS	AB=0.435049,0.556985;ABP=62.8109,49.0423;AC=158,24;AF=0.868132,0.131868;AN=182;AO=4809,918;CIGAR=2X3M2I1M1X,1M1X5M;DP=5814;DPB=7196.14;DPRA=0,1.24069;EPP=10445.6,1996.42;EPPR=5.18177;GTI=1;LEN=9,1;MEANALT=2.10989,2.51724;MQM=33.5795,51.3813;MQMR=60;NS=91;NUMALT=2;ODDS=0.0273675;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=168258,32328;QR=36;RO=1;RPL=0,0;RPP=10445.6,1996.42;RPPR=5.18177;RPR=4809,918;RUN=1,1;SAF=0,0;SAP=10445.6,1996.42;SAR=4809,918;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,19,19:0:0:19,19:673,653:-101.555,-53.2361,-47.5165,-48.6484,0,-42.9289	1/2:117:0,45,71:0:0:45,71:1572,2500:-315.579,-202.225,-188.678,-113.324,0,-91.9507	1/2:62:0,24,38:0:0:24,38:850,1340:-169.77,-108.75,-101.525,-61.3502,0,-49.9111	1/1:154:0,152,0:0:0:152,0:5307,0:-411.059,-45.7566,0,-411.059,-45.7566,-411.059	1/1:22:0,22,0:0:0:22,0:766,0:-65.0601,-6.62266,0,-65.0601,-6.62266,-65.0601	1/1:32:0,31,0:0:0:31,0:1073,0:-86.2929,-9.33193,0,-86.2929,-9.33193,-86.2929	1/1:51:0,51,0:0:0:51,0:1794,0:-138.31,-15.3525,0,-138.31,-15.3525,-138.31	1/1:82:0,81,0:0:0:81,0:2841,0:-226.241,-24.3834,0,-226.241,-24.3834,-226.241	1/1:76:0,76,0:0:0:76,0:2666,0:-213.524,-22.8783,0,-213.524,-22.8783,-213.524	1/1:81:0,79,0:0:0:79,0:2763,0:-213.363,-23.7814,0,-213.363,-23.7814,-213.363	1/1:17:0,17,0:0:0:17,0:602,0:-46.7601,-5.11751,0,-46.7601,-5.11751,-46.7601	1/1:50:0,50,0:0:0:50,0:1746,0:-140.695,-15.0515,0,-140.695,-15.0515,-140.695	1/2:48:0,25,23:0:0:25,23:880,824:-130.528,-67.2024,-59.6767,-63.6624,0,-56.7388	1/1:30:0,30,0:0:0:30,0:1062,0:-89.7045,-9.0309,0,-89.7045,-9.0309,-89.7045	1/1:48:0,48,0:0:0:48,0:1677,0:-131.287,-14.4494,0,-131.287,-14.4494,-131.287	1/1:36:0,36,0:0:0:36,0:1265,0:-106.936,-10.8371,0,-106.936,-10.8371,-106.936	1/1:50:0,48,0:0:0:48,0:1696,0:-135.564,-14.4494,0,-135.564,-14.4494,-135.564	1/1:46:0,46,0:0:0:46,0:1615,0:-130.467,-13.8474,0,-130.467,-13.8474,-130.467	1/2:21:0,8,13:0:0:8,13:275,464:-57.883,-37.9678,-35.5596,-20.2425,0,-16.3291	1/1:102:0,100,0:0:0:100,0:3475,0:-269.405,-30.103,0,-269.405,-30.103,-269.405	1/1:80:0,78,0:0:0:78,0:2729,0:-229.22,-23.4803,0,-229.22,-23.4803,-229.22	1/1:62:0,62,0:0:0:62,0:2179,0:-172.805,-18.6639,0,-172.805,-18.6639,-172.805	1/1:48:0,45,0:0:0:45,0:1589,0:-122.971,-13.5464,0,-122.971,-13.5464,-122.971	1/1:77:0,77,0:0:0:77,0:2702,0:-228.125,-23.1793,0,-228.125,-23.1793,-228.125	1/1:28:0,27,0:0:0:27,0:945,0:-79.6532,-8.12781,0,-79.6532,-8.12781,-79.6532	1/2:255:0,126,127:0:0:126,127:4407,4451:-674.307,-360.984,-323.055,-313.306,0,-275.075	1/1:83:0,80,0:0:0:80,0:2776,0:-234.017,-24.0824,0,-234.017,-24.0824,-234.017	1/1:11:0,11,0:0:0:11,0:389,0:-33.0694,-3.31133,0,-33.0694,-3.31133,-33.0694	1/1:103:0,103,0:0:0:103,0:3609,0:-289.087,-31.0061,0,-289.087,-31.0061,-289.087	1/1:124:0,122,1:0:0:122,1:4293,36:-359.236,-36.7257,0,-356.304,-33.7876,-356.003	1/1:118:0,116,0:0:0:116,0:4035,0:-311.507,-34.9195,0,-311.507,-34.9195,-311.507	1/2:7:0,1,6:0:0:1,6:36,212:-20.2926,-17.5847,-17.2837,-3.04512,0,-1.23894	1/1:5:0,5,0:0:0:5,0:177,0:-14.4218,-1.50515,0,-14.4218,-1.50515,-14.4218	1/1:4:0,4,0:0:0:4,0:143,0:-11.7559,-1.20412,0,-11.7559,-1.20412,-11.7559	1/1:2:0,2,0:0:0:2,0:63,0:-5.55654,-0.60206,0,-5.55654,-0.60206,-5.55654	.:.:.:.:.:.:.:.	1/1:145:1,140,0:1:36:140,0:4953,0:-391.368,-39.1981,0,-391.669,-42.1442,-394.607	1/1:130:0,128,0:0:0:128,0:4501,0:-378.296,-38.5318,0,-378.296,-38.5318,-378.296	1/2:28:0,14,14:0:0:14,14:491,504:-75.649,-41.1895,-36.975,-34.7919,0,-30.5775	.:.:.:.:.:.:.:.	1/2:103:0,45,56:0:0:45,56:1576,1972:-278.081,-159.488,-145.942,-118.613,0,-101.756	1/2:16:0,7,9:0:0:7,9:236,320:-44.322,-26.3806,-24.2734,-18.2757,0,-15.5664	1/1:95:0,92,0:0:0:92,0:3176,0:-263.673,-27.6948,0,-263.673,-27.6948,-263.673	1/1:42:0,41,0:0:0:41,0:1432,0:-109.937,-12.3422,0,-109.937,-12.3422,-109.937	1/1:41:0,39,0:0:0:39,0:1359,0:-106.438,-11.7402,0,-106.438,-11.7402,-106.438	1/1:80:0,77,0:0:0:77,0:2677,0:-215.129,-23.1793,0,-215.129,-23.1793,-215.129	1/1:62:0,62,0:0:0:62,0:2175,0:-174.799,-18.6639,0,-174.799,-18.6639,-174.799	1/1:116:0,112,0:0:0:112,0:3957,0:-306.682,-33.7154,0,-306.682,-33.7154,-306.682	1/1:100:0,98,0:0:0:98,0:3402,0:-265.335,-29.5009,0,-265.335,-29.5009,-265.335	1/2:86:0,35,49:0:0:35,49:1224,1710:-223.346,-138.465,-127.929,-84.8823,0,-70.1318	1/1:108:0,107,0:0:0:107,0:3711,0:-296.105,-32.2102,0,-296.105,-32.2102,-296.105	1/1:3:0,3,0:0:0:3,0:104,0:-7.42859,-0.90309,0,-7.42859,-0.90309,-7.42859	1/2:104:0,56,47:0:0:56,47:1951,1644:-273.096,-133.333,-116.476,-139.834,0,-125.686	1/1:20:0,18,0:0:0:18,0:628,0:-49.7956,-5.41854,0,-49.7956,-5.41854,-49.7956	1/1:12:0,12,0:0:0:12,0:415,0:-33.9138,-3.61236,0,-33.9138,-3.61236,-33.9138	1/2:93:0,45,48:0:0:45,48:1549,1684:-253.17,-136.854,-123.307,-116.651,0,-102.201	1/2:59:0,17,42:0:0:17,42:585,1476:-160.151,-119.174,-114.056,-41.2916,0,-28.6483	.:.:.:.:.:.:.:.	1/1:13:0,13,0:0:0:13,0:464,0:-37.0385,-3.91339,0,-37.0385,-3.91339,-37.0385	1/1:34:0,34,0:0:0:34,0:1204,0:-100.958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chr03	19999014	.	G	A	55353	PASS	AB=0.57566;ABP=187.675;AC=26;AF=0.138298;AN=188;AO=2167;CIGAR=1X;DP=11881;DPB=11881;DPRA=1.32721;EPP=1405.39;EPPR=1864.88;GTI=4;LEN=1;MEANALT=1;MQM=59.9672;MQMR=59.9802;NS=94;NUMALT=1;ODDS=0.77698;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77544;QR=346738;RO=9714;RPL=1280;RPP=157.778;RPPR=786.382;RPR=887;RUN=1;SAF=788;SAP=353.012;SAR=1379;SRF=2379;SRP=5493.6;SRR=7335;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:25,44:25:879:44:1568:-120.641,0,-58.6557	0/1:99:47,52:47:1684:52:1868:-138.597,0,-122.045	0/1:479:246,233:246:8795:233:8372:-609.216,0,-647.346	0/0:184:184,0:184:6592:0:0:0,-55.3895,-593.36	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.501	0/0:103:103,0:103:3668:0:0:0,-31.0061,-330.323	0/0:70:70,0:70:2494:0:0:0,-21.0721,-224.694	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/0:120:120,0:120:4285:0:0:0,-36.1236,-385.827	0/1:97:50,47:50:1775:47:1688:-123.007,0,-130.515	0/0:149:149,0:149:5328:0:0:0,-44.8535,-478.293	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:155:155,0:155:5527:0:0:0,-46.6596,-497.557	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/1:61:29,32:29:1031:32:1131:-83.7349,0,-74.7398	0/0:205:205,0:205:7355:0:0:0,-61.7111,-661.995	0/0:278:278,0:278:9881:0:0:0,-83.6863,-889.236	0/0:143:143,0:143:5098:0:0:0,-43.0473,-458.964	0/0:161:161,0:161:5749:0:0:0,-48.4658,-517.526	0/0:195:194,1:194:6940:1:36:0,-55.1026,-620.934	0/0:169:169,0:169:6019:0:0:0,-50.8741,-541.818	0/1:472:207,265:207:7351:265:9469:-710.08,0,-519.555	0/0:386:386,0:386:13751:0:0:0,-116.198,-1237.37	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:317:317,0:317:11302:0:0:0,-95.4265,-1017.07	0/0:200:192,8:192:6857:8:284:0,-34.3026,-591.292	0/0:106:106,0:106:3791:0:0:0,-31.9092,-341.388	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:45:45,0:45:1596:0:0:0,-13.5463,-143.927	0/0:416:416,0:416:14832:0:0:0,-125.228,-1334.25	0/0:127:126,1:126:4496:1:27:0,-35.531,-402.106	0/1:53:29,24:29:1040:24:864:-62.128,0,-77.9598	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:277:135,142:135:4793:142:5100:-375.756,0,-348.143	0/1:78:48,30:48:1724:30:1080:-74.0329,0,-131.965	0/0:331:331,0:331:11808:0:0:0,-99.6409,-1062.59	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/0:148:147,1:147:5250:1:36:0,-40.9542,-469.039	0/0:104:104,0:104:3703:0:0:0,-31.3071,-333.473	0/0:159:159,0:159:5656:0:0:0,-47.8638,-509.162	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/1:141:44,97:44:1571:97:3467:-269.797,0,-99.2356	0/0:200:200,0:200:7138:0:0:0,-60.206,-642.423	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:107:44,63:44:1572:63:2251:-170.642,0,-109.561	0/0:81:81,0:81:2883:0:0:0,-24.3834,-259.707	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:207:82,125:82:2904:125:4476:-340.694,0,-199.282	0/1:94:30,64:30:1076:64:2292:-178.242,0,-68.856	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:197:197,0:197:7048:0:0:0,-59.3029,-634.38	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.133	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:201:201,0:201:7142:0:0:0,-60.507,-642.829	0/0:161:160,1:160:5712:1:36:0,-44.8676,-510.601	0/0:135:130,5:130:4631:5:180:0,-24.087,-400.403	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/0:139:138,1:138:4928:1:36:0,-38.2449,-440.071	0/1:224:62,162:62:2220:162:5786:-453.423,0,-132.634	0/0:102:102,0:102:3644:0:0:0,-30.7051,-328.165	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/1:156:68,88:68:2425:88:3139:-235.548,0,-171.543	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:117:117,0:117:4171:0:0:0,-35.2205,-375.574	0/0:68:68,0:68:2406:0:0:0,-20.47,-216.796	0/0:262:262,0:262:9367:0:0:0,-78.8699,-842.995	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/1:134:64,70:64:2292:70:2516:-186.353,0,-166.203	0/1:75:41,34:41:1464:34:1220:-87.5296,0,-109.479	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:168:168,0:168:5979:0:0:0,-50.573,-538.22	0/0:191:191,0:191:6856:0:0:0,-57.4967,-617.107	0/0:210:210,0:210:7497:0:0:0,-63.2163,-674.774	0/0:51:51,0:51:1827:0:0:0,-15.3525,-164.71	0/1:118:40,78:40:1440:78:2770:-214.017,0,-94.3762	0/1:101:25,76:25:887:76:2724:-214.999,0,-49.7441	0/1:214:59,155:59:2098:155:5538:-434.124,0,-124.668	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/1:111:62,49:62:2224:49:1757:-125,0,-167.01	0/1:215:110,105:110:3921:105:3741:-272.169,0,-288.361	0/1:120:22,98:22:792:98:3516:-280.526,0,-35.4821	0/0:119:119,0:119:4232:0:0:0,-35.8226,-381.06	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439
chr03	20002722	.	CACAG	GACTGAT,CACTG	145467	PASS	AB=0.488953,0.501441;ABP=5.21723,3.04785;AC=162,26;AF=0.861702,0.138298;AN=188;AO=5957,1059;CIGAR=1X2M2I1M1X,3M1X1M;DP=7079;DPB=9474;DPRA=9.50403,1.22448;EPP=12938.5,2302.6;EPPR=7.35324;GTI=2;LEN=7,1;MEANALT=1.90323,2.58621;MQM=40.9931,59.9792;MQMR=60;NS=94;NUMALT=2;ODDS=0.742227;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=208656,37844;QR=71;RO=2;RPL=5957,1059;RPP=12938.5,2302.6;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=5957,1059;SAP=12938.5,2302.6;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:18:0,12,6:0:0:12,6:416,216:-49.6696,-17.9843,-14.372,-32.0342,0,-30.228	1/2:81:0,42,38:0:0:42,38:1468,1364:-224.572,-111.261,-98.6176,-113.299,0,-101.86	1/2:71:0,47,24:0:0:47,24:1655,864:-201.003,-70.8578,-56.7094,-130.499,0,-123.274	1/1:81:0,78,0:0:0:78,0:2736,0:-239.015,-23.4803,0,-239.015,-23.4803,-239.015	1/1:30:0,29,0:0:0:29,0:1014,0:-87.3682,-8.72987,0,-87.3682,-8.72987,-87.3682	1/1:39:0,37,0:0:0:37,0:1306,0:-113.467,-11.1381,0,-113.467,-11.1381,-113.467	1/1:86:0,84,0:0:0:84,0:2941,0:-256.809,-25.2865,0,-256.809,-25.2865,-256.809	1/1:102:0,102,0:0:0:102,0:3551,0:-306.942,-30.7051,0,-306.942,-30.7051,-306.942	1/1:55:0,55,0:0:0:55,0:1949,0:-168.417,-16.5567,0,-168.417,-16.5567,-168.417	1/1:63:0,62,0:0:0:62,0:2172,0:-190.414,-18.6639,0,-190.414,-18.6639,-190.414	1/1:81:0,81,0:0:0:81,0:2832,0:-247.478,-24.3834,0,-247.478,-24.3834,-247.478	1/1:87:0,84,0:0:0:84,0:2944,0:-256.22,-25.2865,0,-256.22,-25.2865,-256.22	1/2:88:0,48,40:0:0:48,40:1691,1432:-249.327,-117.136,-102.687,-132.54,0,-120.499	1/1:105:0,104,0:0:0:104,0:3624,0:-312.834,-31.3071,0,-312.834,-31.3071,-312.834	1/1:92:0,91,0:0:0:91,0:3234,0:-282.416,-27.3937,0,-282.416,-27.3937,-282.416	1/1:70:0,70,0:0:0:70,0:2447,0:-211.065,-21.0721,0,-211.065,-21.0721,-211.065	1/1:98:0,98,0:0:0:98,0:3444,0:-297.447,-29.5009,0,-297.447,-29.5009,-297.447	1/1:68:0,68,0:0:0:68,0:2400,0:-206.084,-20.47,0,-206.084,-20.47,-206.084	1/2:52:0,21,31:0:0:21,31:741,1107:-148.912,-90.6091,-84.2874,-58.6509,0,-49.319	1/1:118:0,117,0:0:0:117,0:4070,0:-355.578,-35.2205,0,-355.578,-35.2205,-355.578	1/1:54:0,53,0:0:0:53,0:1849,0:-159.223,-15.9546,0,-159.223,-15.9546,-159.223	1/1:51:0,48,0:0:0:48,0:1664,0:-147.006,-14.4494,0,-147.006,-14.4494,-147.006	1/1:54:0,54,0:0:0:54,0:1892,0:-165.307,-16.2556,0,-165.307,-16.2556,-165.307	1/1:71:0,71,0:0:0:71,0:2460,0:-213.877,-21.3731,0,-213.877,-21.3731,-213.877	1/1:22:0,22,0:0:0:22,0:772,0:-66.5771,-6.62266,0,-66.5771,-6.62266,-66.5771	1/2:201:0,93,105:0:0:93,105:3261,3772:-566.174,-307.757,-279.761,-258.455,0,-226.847	1/1:123:0,121,1:0:0:121,1:4252,36:-367.424,-36.4246,0,-364.486,-33.4584,-364.185	1/1:39:0,39,0:0:0:39,0:1363,0:-118.139,-11.7402,0,-118.139,-11.7402,-118.139	1/1:182:0,181,0:0:0:181,0:6380,0:-564.04,-54.4864,0,-564.04,-54.4864,-564.04	1/1:117:0,115,0:0:0:115,0:4005,0:-346.629,-34.6185,0,-346.629,-34.6185,-346.629	1/1:63:0,63,0:0:0:63,0:2206,0:-193.114,-18.9649,0,-193.114,-18.9649,-193.114	1/2:5:0,2,3:0:0:2,3:70,104:-14.1317,-8.79971,-8.19765,-5.66857,0,-4.76548	1/1:14:0,14,0:0:0:14,0:478,0:-41.9562,-4.21442,0,-41.9562,-4.21442,-41.9562	1/1:4:0,4,0:0:0:4,0:144,0:-12.8786,-1.20412,0,-12.8786,-1.20412,-12.8786	1/1:8:0,8,0:0:0:8,0:287,0:-25.168,-2.40824,0,-25.168,-2.40824,-25.168	1/1:1:0,1,0:0:0:1,0:36,0:-3.3876,-0.30103,0,-3.3876,-0.30103,-3.3876	1/1:187:0,186,0:0:0:186,0:6558,0:-577.416,-55.9916,0,-577.416,-55.9916,-577.416	1/1:165:0,164,0:0:0:164,0:5724,0:-496.274,-49.3689,0,-496.274,-49.3689,-496.274	1/2:78:0,38,39:0:0:38,39:1339,1382:-217.879,-112.577,-101.138,-105.29,0,-93.5495	1/1:4:0,4,0:0:0:4,0:140,0:-12.4871,-1.20412,0,-12.4871,-1.20412,-12.4871	1/2:165:0,73,88:0:0:73,88:2562,3109:-451.806,-253.232,-231.256,-198.604,0,-172.113	1/2:66:0,40,26:0:0:40,26:1403,932:-185.608,-76.3721,-64.3309,-109.586,0,-101.759	1/1:117:0,116,0:0:0:116,0:4052,0:-348.373,-34.9195,0,-348.373,-34.9195,-348.373	1/1:76:0,75,0:0:0:75,0:2624,0:-228.641,-22.5773,0,-228.641,-22.5773,-228.641	1/1:65:0,65,0:0:0:65,0:2244,0:-197.196,-19.567,0,-197.196,-19.567,-197.196	1/1:50:0,49,0:0:0:49,0:1717,0:-151.715,-14.7505,0,-151.715,-14.7505,-151.715	1/1:65:0,61,0:0:0:61,0:2146,0:-185.436,-18.3628,0,-185.436,-18.3628,-185.436	1/1:104:0,103,0:0:0:103,0:3621,0:-316.406,-31.0061,0,-316.406,-31.0061,-316.406	1/1:63:0,62,0:0:0:62,0:2182,0:-189.235,-18.6639,0,-189.235,-18.6639,-189.235	1/2:117:0,52,65:0:0:52,65:1841,2328:-335.268,-190.213,-174.559,-145.405,0,-125.838	1/1:109:0,108,0:0:0:108,0:3783,0:-332.486,-32.5112,0,-332.486,-32.5112,-332.486	1/1:17:0,16,0:0:0:16,0:573,0:-50.2003,-4.81648,0,-50.2003,-4.81648,-50.2003	1/2:149:0,91,57:0:0:91,57:3207,2052:-417.57,-167.492,-140.098,-250.129,0,-232.971	1/1:32:0,32,0:0:0:32,0:1128,0:-100.183,-9.63296,0,-100.183,-9.63296,-100.183	1/1:10:0,10,0:0:0:10,0:355,0:-31.1722,-3.0103,0,-31.1722,-3.0103,-31.1722	1/2:98:0,56,41:0:0:56,41:1942,1476:-269.431,-120.523,-103.666,-148.983,0,-136.641	1/2:17:0,11,6:0:0:11,6:383,212:-47.5671,-17.6186,-14.3073,-30.2956,0,-28.4894	2/2:8:0,0,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chr03	20006034	.	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chr03	20045374	.	A	C	23799.3	PASS	AB=0.519073;ABP=11.4591;AC=26;AF=0.138298;AN=188;AO=1400;CIGAR=1X;DP=10227;DPB=10227;DPRA=1.23225;EPP=3034.39;EPPR=18897.9;GTI=1;LEN=1;MEANALT=1;MQM=59.9157;MQMR=59.9769;NS=94;NUMALT=1;ODDS=4.07223;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50062;QR=315309;RO=8825;RPL=1;RPP=3034.39;RPPR=18897.9;RPR=1399;RUN=1;SAF=1400;SAP=3043.07;SAR=0;SRF=8825;SRP=19166.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:84:50,34:50:1796:34:1224:-85.1805,0,-136.631	0/1:75:31,44:31:1093:44:1580:-119.914,0,-76.1004	0/1:170:85,85:85:3056:85:3015:-220.397,0,-224.093	0/0:202:202,0:202:7172:0:0:0,-60.8081,-645.537	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:176:176,0:176:6297:0:0:0,-52.9813,-566.821	0/0:163:163,0:163:5822:0:0:0,-49.0679,-524.091	0/0:158:157,1:157:5621:1:36:0,-43.9649,-502.412	0/0:111:111,0:111:3954:0:0:0,-33.4143,-355.333	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:122:121,1:121:4340:1:36:0,-33.1274,-387.176	0/1:118:63,55:63:2268:55:1952:-140.432,0,-168.86	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/0:86:86,0:86:3065:0:0:0,-25.8886,-276.078	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.11	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/0:44:43,0:43:1544:0:0:0,-12.9443,-139.04	0/1:44:27,17:27:972:17:612:-42.1681,0,-74.5526	0/0:225:225,0:225:8019:0:0:0,-67.7317,-721.73	0/0:179:179,0:179:6425:0:0:0,-53.8844,-577.145	0/0:154:154,0:154:5471:0:0:0,-46.3586,-492.517	0/0:170:170,0:170:6067:0:0:0,-51.1751,-546.129	0/0:70:70,0:70:2467:0:0:0,-21.0721,-222.28	0/0:130:130,0:130:4600:0:0:0,-39.1339,-414.163	0/1:282:142,140:142:5077:140:4985:-363.901,0,-372.183	0/0:314:313,1:313:11221:1:36:0,-90.9251,-1006.17	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:241:240,1:240:8529:1:36:0,-68.95,-764.01	0/0:169:167,2:167:5950:2:72:0,-44.0373,-528.771	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:223:223,0:223:8001:0:0:0,-67.1297,-720.095	0/0:114:113,1:113:4056:1:36:0,-30.7191,-361.628	0/1:49:18,31:18:648:31:1112:-85.6409,0,-43.9014	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:217:119,98:119:4223:98:3524:-251.915,0,-314.925	0/1:55:25,30:25:885:30:1076:-80.5962,0,-63.4099	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:164:163,1:163:5803:1:36:0,-45.7706,-518.784	0/0:127:127,0:127:4557:0:0:0,-38.2308,-410.293	0/0:122:122,0:122:4338:0:0:0,-36.7257,-390.595	0/0:141:140,0:140:4987:0:0:0,-42.1442,-448.394	0/1:133:70,63:70:2516:63:2264:-163.985,0,-186.655	0/0:200:200,0:200:7139:0:0:0,-60.206,-642.459	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:202:86,116:86:3050:116:4152:-313.055,0,-213.92	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.441	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:215:89,126:89:3173:126:4503:-340.642,0,-221.072	0/1:96:42,54:42:1512:54:1940:-145.977,0,-107.476	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:100:100,0:100:3565:0:0:0,-30.103,-321.057	0/0:118:118,0:118:4244:0:0:0,-35.5215,-382.137	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:206:206,0:206:7361:0:0:0,-62.0122,-662.538	0/0:181:180,1:180:6449:1:36:0,-50.8882,-576.896	0/0:66:65,1:65:2317:1:36:0,-16.2697,-205.19	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:156:156,0:156:5564:0:0:0,-46.9607,-500.514	0/1:188:76,112:76:2724:112:3998:-303.417,0,-188.809	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:77:77,0:77:2730:0:0:0,-23.1793,-245.941	0/1:35:16,19:16:572:19:680:-50.9931,0,-41.2774	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8446	0/0:265:265,0:265:9497:0:0:0,-79.7729,-854.685	0/0:161:161,0:161:5784:0:0:0,-48.4658,-520.672	0/0:169:169,0:169:6014:0:0:0,-50.8741,-541.366	0/0:165:165,0:165:5906:0:0:0,-49.6699,-531.646	0/1:130:49,81:49:1756:81:2898:-221.816,0,-119.19	0/1:61:38,23:38:1349:23:828:-56.4813,0,-103.345	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:105:105,0:105:3746:0:0:0,-31.6081,-337.338	0/0:114:114,0:114:4046:0:0:0,-34.3174,-364.221	0/0:285:285,0:285:10149:0:0:0,-85.7935,-913.339	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:106:65,41:65:2336:41:1476:-101.227,0,-178.59	0/1:54:33,21:33:1173:21:756:-52.1116,0,-89.6199	0/1:147:65,82:65:2332:82:2921:-218.873,0,-165.888	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:35:22,13:22:792:13:468:-31.9236,0,-61.0696	0/1:88:43,45:43:1544:45:1616:-119.22,0,-112.762	0/1:83:29,54:29:1044:54:1906:-146.821,0,-69.2893	0/0:168:168,0:168:5998:0:0:0,-50.573,-539.924	0/0:126:126,0:126:4501:0:0:0,-37.9298,-405.258
chr03	20164716	.	C	T	143249	PASS	AB=0.453786;ABP=40.7431;AC=162;AF=0.870968;AN=186;AO=6508;CIGAR=1X;DP=7630;DPB=7630;DPRA=0;EPP=14135;EPPR=2439.4;GTI=1;LEN=1;MEANALT=1;MQM=52.1056;MQMR=59.5214;NS=93;NUMALT=1;ODDS=0.554297;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232908;QR=39976;RO=1122;RPL=6508;RPP=14135;RPPR=2439.4;RPR=0;RUN=1;SAF=0;SAP=14135;SAR=6508;SRF=0;SRP=2439.4;SRR=1122;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:19,14:19:672:14:500:-35.2847,0,-50.8719	0/1:72:41,31:41:1472:31:1116:-78.8131,0,-111.077	0/1:77:23,54:23:820:54:1917:-146.369,0,-50.9377	1/1:196:0,196:0:0:196:7005:-626.883,-59.0019,0	1/1:51:0,51:0:0:51:1812:-162.738,-15.3525,0	1/1:30:0,30:0:0:30:1080:-97.2458,-9.0309,0	1/1:136:0,136:0:0:136:4857:-435.419,-40.9401,0	1/1:82:0,82:0:0:82:2909:-260.227,-24.6845,0	1/1:43:0,43:0:0:43:1533:-136.608,-12.9443,0	1/1:46:0,46:0:0:46:1648:-147.176,-13.8474,0	1/1:69:0,69:0:0:69:2470:-222.13,-20.7711,0	1/1:73:0,73:0:0:73:2620:-234.754,-21.9752,0	0/1:68:38,30:38:1352:30:1076:-76.2328,0,-101.483	1/1:75:0,75:0:0:75:2688:-240.139,-22.5773,0	1/1:79:0,79:0:0:79:2837:-254.461,-23.7814,0	1/1:58:0,58:0:0:58:2084:-187.404,-17.4597,0	1/1:68:0,68:0:0:68:2440:-219.264,-20.47,0	1/1:44:0,44:0:0:44:1576:-141.41,-13.2453,0	0/1:44:21,23:21:752:23:828:-61.2309,0,-54.7576	1/1:218:0,218:0:0:218:7813:-700.725,-65.6245,0	1/1:97:0,97:0:0:97:3456:-309.964,-29.1999,0	1/1:95:0,95:0:0:95:3378:-303.003,-28.5979,0	1/1:56:0,56:0:0:56:2000:-178.617,-16.8577,0	1/1:78:0,78:0:0:78:2796:-250.854,-23.4803,0	1/1:36:0,36:0:0:36:1292:-116.292,-10.8371,0	0/1:259:140,119:140:5005:119:4268:-304.762,0,-372.431	1/1:122:0,122:0:0:122:4349:-389.778,-36.7257,0	1/1:31:0,31:0:0:31:1104:-99.4001,-9.33193,0	1/1:282:1,281:1:36:281:10079:-899.158,-81.2922,0	1/1:88:0,88:0:0:88:3168:-282.94,-26.4906,0	1/1:93:0,93:0:0:93:3344:-299.441,-27.9958,0	0/1:3:1,2:1:21:2:72:-5.92394,0,-1.1968	1/1:13:0,13:0:0:13:468:-42.3959,-3.91339,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	1/1:7:0,7:0:0:7:252:-22.6024,-2.10721,0	1/1:219:0,219:0:0:219:7863:-704.56,-65.9256,0	1/1:150:1,149:1:36:149:5320:-474.02,-41.5562,0	0/1:78:51,27:51:1832:27:968:-63.0237,0,-141.661	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:123:69,54:69:2442:54:1944:-137.291,0,-183.003	0/1:39:25,14:25:888:14:504:-33.8871,0,-68.3639	1/1:86:0,86:0:0:86:3057:-273.876,-25.8886,0	1/1:70:0,70:0:0:70:2497:-224.263,-21.0721,0	1/1:65:0,65:0:0:65:2328:-209.258,-19.567,0	1/1:30:0,30:0:0:30:1072:-96.1899,-9.0309,0	1/1:71:0,71:0:0:71:2544:-228.52,-21.3731,0	1/1:117:0,117:0:0:117:4176:-374.757,-35.2205,0	1/1:75:0,75:0:0:75:2681:-240.371,-22.5773,0	0/1:114:58,56:58:2080:56:1978:-142.712,0,-153.147	1/1:160:1,159:1:36:159:5677:-505.31,-44.5665,0	1/1:9:0,9:0:0:9:324:-29.2984,-2.70927,0	0/1:120:62,58:62:2216:58:2080:-150.782,0,-163.565	1/1:36:0,36:0:0:36:1284:-115.589,-10.8371,0	1/1:13:0,13:0:0:13:468:-42.3529,-3.91339,0	0/1:123:50,73:50:1784:73:2600:-196.161,0,-123.811	0/1:33:25,8:25:892:8:284:-15.8236,0,-70.6624	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	1/1:15:0,15:0:0:15:540:-48.6539,-4.51545,0	1/1:64:0,64:0:0:64:2296:-206.511,-19.2659,0	1/1:152:0,152:0:0:152:5458:-489.369,-45.7566,0	1/1:5:0,5:0:0:5:165:-15.1268,-1.50515,0	1/1:133:0,133:0:0:133:4744:-426.024,-40.037,0	1/1:115:7,108:7:248:108:3864:-322.36,-11.9543,0	1/1:41:0,41:0:0:41:1457:-130.736,-12.3422,0	1/1:98:1,97:1:21:97:3445:-307.245,-27.401,0	1/1:109:0,109:0:0:109:3916:-351.633,-32.8123,0	0/1:69:47,22:47:1688:22:792:-50.2708,0,-131.417	1/1:34:0,34:0:0:34:1224:-110.17,-10.235,0	1/1:66:0,66:0:0:66:2357:-209.377,-19.868,0	0/1:105:58,47:58:2054:47:1692:-120.409,0,-153.503	1/1:24:0,24:0:0:24:864:-77.9339,-7.22472,0	1/1:144:0,144:0:0:144:5133:-459.269,-43.3483,0	1/1:35:0,35:0:0:35:1260:-113.217,-10.5361,0	1/1:122:0,122:0:0:122:4372:-392.585,-36.7257,0	1/1:139:0,139:0:0:139:4965:-445.37,-41.8432,0	0/1:65:39,26:39:1381:26:936:-64.3601,0,-105.008	0/1:52:37,15:37:1305:15:536:-32.7357,0,-102.043	1/1:12:0,12:0:0:12:432:-38.9394,-3.61236,0	1/1:68:0,68:0:0:68:2440:-219.025,-20.47,0	1/1:123:0,123:0:0:123:4424:-396.217,-37.0267,0	1/1:213:0,213:0:0:213:7629:-683.429,-64.1194,0	1/1:108:0,108:0:0:108:3868:-346.955,-32.5112,0	0/1:74:30,44:30:1080:44:1580:-119.81,0,-75.2107	0/1:80:46,34:46:1644:34:1209:-84.8288,0,-124.16	0/1:164:91,73:91:3272:73:2623:-186.16,0,-245.3	1/1:57:0,57:0:0:57:2037:-182.885,-17.1587,0	1/1:63:0,63:0:0:63:2255:-201.956,-18.9649,0	1/1:84:0,84:0:0:84:3024:-270.768,-25.2865,0	0/1:54:27,27:27:926:27:968:-70.9948,0,-67.381	0/1:130:76,54:76:2712:54:1934:-134.692,0,-205.115	0/1:55:37,18:37:1309:18:648:-41.9533,0,-101.547	1/1:99:0,99:0:0:99:3537:-317.025,-29.802,0	1/1:102:0,102:0:0:102:3656:-328.202,-30.7051,0
chr03	20174313	.	TGTTC	CGTTT,CGTTC	166507	PASS	AB=0.524623,0.471357;ABP=13.4901,17.1914;AC=161,27;AF=0.856383,0.143617;AN=188;AO=6704,945;CIGAR=1X3M1X,1X4M;DP=7677;DPB=7677.2;DPRA=0,0.916335;EPP=14491.2,2037.72;EPPR=0;GTI=3;LEN=5,1;MEANALT=1.6383,2.25;MQM=59.9718,59.9989;MQMR=0;NS=94;NUMALT=2;ODDS=3.86591;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=234433,33752;QR=0;RO=0;RPL=6697,943;RPP=14499.8,2037.72;RPPR=0;RPR=7,2;RUN=1,1;SAF=1,0;SAP=14551.9,2055.05;SAR=6703,945;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:81:0,46,34:0:0:46,34:1614,1202:-229.259,-97.9095,-84.0621,-131.361,0,-121.126	1/2:46:0,29,17:0:0:29,17:1010,612:-132.421,-50.2959,-41.5661,-82.4801,0,-77.3626	1/2:70:0,38,32:0:0:38,32:1298,1128:-197.513,-92.1934,-80.7543,-105.667,0,-96.0336	1/1:146:0,145,0:0:0:145,0:5035,0:-453.001,-43.6494,0,-453.001,-43.6494,-453.001	1/1:91:0,91,0:0:0:91,0:3205,0:-288.677,-27.3937,0,-288.677,-27.3937,-288.677	1/1:52:0,52,0:0:0:52,0:1821,0:-164.169,-15.6536,0,-164.169,-15.6536,-164.169	1/1:47:0,47,0:0:0:47,0:1655,0:-149.237,-14.1484,0,-149.237,-14.1484,-149.237	1/1:173:0,171,0:0:0:171,0:5992,0:-539.156,-51.4761,0,-539.156,-51.4761,-539.156	1/1:153:0,152,1:0:0:152,1:5357,36:-481.912,-45.7566,0,-478.974,-42.4593,-478.673	1/1:85:0,85,0:0:0:85,0:2950,0:-265.734,-25.5876,0,-265.734,-25.5876,-265.734	1/1:81:0,81,0:0:0:81,0:2812,0:-253.261,-24.3834,0,-253.261,-24.3834,-253.261	1/1:128:0,128,0:0:0:128,0:4495,0:-404.726,-38.5318,0,-404.726,-38.5318,-404.726	1/2:107:0,57,50:0:0:57,50:1992,1792:-308.552,-146.511,-129.352,-162.395,0,-147.344	1/1:64:0,63,0:0:0:63,0:2232,0:-200.835,-18.9649,0,-200.835,-18.9649,-200.835	1/1:73:0,72,1:0:0:72,1:2530,36:-227.593,-21.6742,0,-224.656,-18.3769,-224.355	1/1:73:0,72,0:0:0:72,0:2544,0:-228.902,-21.6742,0,-228.902,-21.6742,-228.902	1/1:35:0,35,0:0:0:35,0:1227,0:-110.733,-10.5361,0,-110.733,-10.5361,-110.733	1/1:37:0,36,0:0:0:36,0:1262,0:-113.522,-10.8371,0,-113.522,-10.8371,-113.522	1/2:37:0,16,21:0:0:16,21:544,756:-106.16,-62.0456,-57.2291,-44.4627,0,-38.1411	1/1:159:0,158,0:0:0:158,0:5555,0:-499.865,-47.5627,0,-499.865,-47.5627,-499.865	1/1:164:0,164,0:0:0:164,0:5749,0:-517.527,-49.3689,0,-517.527,-49.3689,-517.527	1/1:56:0,56,0:0:0:56,0:1970,0:-177.574,-16.8577,0,-177.574,-16.8577,-177.574	1/1:159:0,158,0:0:0:158,0:5486,0:-493.521,-47.5627,0,-493.521,-47.5627,-493.521	1/1:74:0,74,0:0:0:74,0:2601,0:-234.34,-22.2762,0,-234.34,-22.2762,-234.34	1/1:107:0,107,0:0:0:107,0:3738,0:-336.627,-32.2102,0,-336.627,-32.2102,-336.627	1/2:196:0,98,98:0:0:98,98:3422,3501:-564.145,-285.799,-256.298,-278.699,0,-249.198	1/1:138:0,137,0:0:0:137,0:4751,0:-427.4,-41.2411,0,-427.4,-41.2411,-427.4	1/1:31:0,31,0:0:0:31,0:1098,0:-99.1302,-9.33193,0,-99.1302,-9.33193,-99.1302	1/1:147:0,146,0:0:0:146,0:5089,0:-457.807,-43.9504,0,-457.807,-43.9504,-457.807	1/1:105:0,102,3:0:0:102,3:3547,108:-319.084,-30.7051,0,-310.271,-21.533,-309.368	1/1:66:0,66,0:0:0:66,0:2294,0:-206.72,-19.868,0,-206.72,-19.868,-206.72	1/2:6:0,5,1:0:0:5,1:174,36:-17.4355,-3.29724,-1.79209,-14.4961,0,-14.1951	1/1:12:0,12,0:0:0:12,0:404,0:-36.5947,-3.61236,0,-36.5947,-3.61236,-36.5947	1/1:10:0,10,0:0:0:10,0:337,0:-30.6556,-3.0103,0,-30.6556,-3.0103,-30.6556	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:12:0,12,0:0:0:12,0:417,0:-37.862,-3.61236,0,-37.862,-3.61236,-37.862	1/1:213:0,213,0:0:0:213,0:7460,0:-671.461,-64.1194,0,-671.461,-64.1194,-671.461	1/1:91:0,90,0:0:0:90,0:3147,0:-283.099,-27.0927,0,-283.099,-27.0927,-283.099	1/2:74:0,37,35:0:0:37,35:1300,1256:-208.292,-102.483,-91.3444,-105.837,0,-95.301	1/1:4:0,4,0:0:0:4,0:137,0:-12.6676,-1.20412,0,-12.6676,-1.20412,-12.6676	1/2:101:0,61,40:0:0:61,40:2126,1440:-290.746,-117.857,-99.4937,-173.245,0,-161.204	1/2:44:0,25,19:0:0:25,19:868,666:-125.104,-54.5448,-47.0191,-70.9078,0,-65.1883	1/1:165:0,165,0:0:0:165,0:5793,0:-521.496,-49.67,0,-521.496,-49.67,-521.496	1/1:67:0,67,0:0:0:67,0:2339,0:-210.769,-20.169,0,-210.769,-20.169,-210.769	1/1:78:0,77,1:0:0:77,1:2699,36:-242.797,-23.1793,0,-239.86,-19.8821,-239.559	1/1:136:0,135,0:0:0:135,0:4721,0:-424.758,-40.6391,0,-424.758,-40.6391,-424.758	1/1:84:0,84,0:0:0:84,0:2899,0:-261.151,-25.2865,0,-261.151,-25.2865,-261.151	1/1:122:0,121,0:0:0:121,0:4209,0:-378.639,-36.4246,0,-378.639,-36.4246,-378.639	1/1:54:0,54,0:0:0:54,0:1869,0:-168.488,-16.2556,0,-168.488,-16.2556,-168.488	1/2:121:0,64,57:0:0:64,57:2244,2048:-350.036,-167.433,-148.167,-182.958,0,-165.8	1/1:67:0,66,0:0:0:66,0:2348,0:-211.22,-19.868,0,-211.22,-19.868,-211.22	1/1:5:0,5,0:0:0:5,0:174,0:-16.0013,-1.50515,0,-16.0013,-1.50515,-16.0013	1/2:52:0,26,26:0:0:26,26:920,932:-151.306,-76.3719,-68.5451,-75.2904,0,-67.4636	1/1:66:0,65,1:0:0:65,1:2279,36:-205.014,-19.567,0,-202.077,-16.2697,-201.776	1/1:14:0,14,0:0:0:14,0:498,0:-45.1555,-4.21442,0,-45.1555,-4.21442,-45.1555	1/2:92:0,52,40:0:0:52,40:1810,1424:-263.59,-116.416,-100.763,-147.526,0,-135.485	1/2:60:0,21,39:0:0:21,39:719,1392:-172.197,-113.839,-107.517,-58.705,0,-46.9648	1/2:9:0,3,6:0:0:3,6:108,216:-26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chr03	20175854	.	CCCT	CCCA,TCCA	195441	PASS	AB=0.479493,0.51566;ABP=12.807,8.72317;AC=163,23;AF=0.876344,0.123656;AN=186;AO=7580,1411;CIGAR=3M1X,1X2M1X;DP=9041;DPB=9042;DPRA=0,1.4893;EPP=16462.8,3066.96;EPPR=7.35324;GTI=2;LEN=1,4;MEANALT=1.83871,2.45455;MQM=59.9642,59.7193;MQMR=60;NS=93;NUMALT=2;ODDS=0.724295;PAIRED=0,0;PAIREDR=0;PAO=0.5,2;PQA=16,72;PQR=16;PRO=0.5;QA=268354,49215;QR=71;RO=2;RPL=7580,1411;RPP=16462.8,3066.96;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=7580,1411;SAP=16462.8,3066.96;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:21:0,18,3:0:0:18,3:632,106:-60.4181,-8.98261,-3.56407,-51.7882,0,-50.8851	1/2:149:0,54,95:0:0:54,95:1915,3336:-427.864,-271.848,-255.592,-156.37,0,-127.772	1/2:129:0,45,84:0:0:45,84:1592,2921:-367.514,-237.841,-224.295,-130.024,0,-104.737	1/1:152:0,152,0:0:0:152,0:5384,0:-484.691,-45.7566,0,-484.691,-45.7566,-484.691	1/1:70:0,69,1:0:0:69,1:2450,35:-220.404,-20.7711,0,-217.557,-17.5735,-217.256	1/1:49:0,49,0:0:0:49,0:1748,0:-157.577,-14.7505,0,-157.577,-14.7505,-157.577	1/1:137:0,137,0:0:0:137,0:4877,0:-439.084,-41.2411,0,-439.084,-41.2411,-439.084	1/1:168:0,166,0:0:0:166,0:5880,0:-529.046,-49.971,0,-529.046,-49.971,-529.046	1/1:57:0,56,0:0:0:56,0:2000,0:-179.914,-16.8577,0,-179.914,-16.8577,-179.914	1/1:54:0,54,0:0:0:54,0:1879,0:-169.385,-16.2556,0,-169.385,-16.2556,-169.385	1/1:164:0,164,0:0:0:164,0:5784,0:-520.68,-49.3689,0,-520.68,-49.3689,-520.68	1/1:98:0,98,0:0:0:98,0:3457,0:-311.345,-29.5009,0,-311.345,-29.5009,-311.345	1/2:92:0,46,45:0:0:46,45:1605,1564:-257.685,-127.144,-113.297,-130.53,0,-116.984	1/1:173:0,173,0:0:0:173,0:6122,0:-551.085,-52.0782,0,-551.085,-52.0782,-551.085	1/1:81:0,81,0:0:0:81,0:2895,0:-260.786,-24.3834,0,-260.786,-24.3834,-260.786	1/1:71:0,71,0:0:0:71,0:2534,0:-228.311,-21.3731,0,-228.311,-21.3731,-228.311	1/1:126:0,125,0:0:0:125,0:4390,0:-394.889,-37.6288,0,-394.889,-37.6288,-394.889	1/1:97:0,95,2:0:0:95,2:3352,72:-301.541,-28.5979,0,-295.711,-22.4105,-295.109	1/2:87:0,41,45:0:0:41,45:1446,1566:-245.058,-127.316,-114.974,-117.733,0,-104.186	1/1:150:0,149,0:0:0:149,0:5232,0:-470.664,-44.8535,0,-470.664,-44.8535,-470.664	1/1:125:0,123,0:0:0:123,0:4374,0:-393.55,-37.0267,0,-393.55,-37.0267,-393.55	1/1:52:0,52,0:0:0:52,0:1847,0:-166.509,-15.6536,0,-166.509,-15.6536,-166.509	1/1:35:0,35,0:0:0:35,0:1224,0:-110.461,-10.5361,0,-110.461,-10.5361,-110.461	1/1:75:0,75,0:0:0:75,0:2673,0:-240.809,-22.5773,0,-240.809,-22.5773,-240.809	1/1:72:0,72,0:0:0:72,0:2547,0:-229.479,-21.6742,0,-229.479,-21.6742,-229.479	1/2:147:0,75,69:0:0:75,69:2666,2407:-412.997,-195.796,-173.218,-217.238,0,-196.467	1/1:295:0,294,0:0:0:294,0:10414,0:-936.939,-88.5028,0,-936.939,-88.5028,-936.939	1/1:42:0,42,0:0:0:42,0:1479,0:-133.401,-12.6433,0,-133.401,-12.6433,-133.401	1/1:221:0,219,1:0:0:219,1:7746,36:-696.886,-65.9256,0,-693.948,-62.9232,-693.647	1/1:115:0,106,8:0:0:106,8:3758,280:-338.082,-31.9092,0,-315.301,-9.03977,-312.893	1/1:138:0,136,0:0:0:136,0:4850,0:-436.403,-40.9401,0,-436.403,-40.9401,-436.403	.:.:.:.:.:.:.:.	1/1:24:0,24,0:0:0:24,0:856,0:-77.3611,-7.22472,0,-77.3611,-7.22472,-77.3611	1/1:7:0,7,0:0:0:7,0:243,0:-22.2075,-2.10721,0,-22.2075,-2.10721,-22.2075	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:233:0,230,0:0:0:230,0:8126,0:-731.037,-69.2369,0,-731.037,-69.2369,-731.037	1/1:227:0,224,2:0:0:224,2:7945,66:-714.774,-67.4307,0,-709.438,-62.0278,-708.836	1/2:135:0,62,73:0:0:62,73:2194,2530:-384.685,-205.975,-187.311,-179.061,0,-157.086	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:122:0,61,60:0:0:61,60:2169,2087:-346.488,-169.726,-151.363,-176.842,0,-158.781	1/2:65:0,32,33:0:0:32,33:1122,1155:-185.256,-93.9584,-84.3254,-91.2883,0,-81.3543	1/1:99:0,96,0:0:0:96,0:3395,0:-305.343,-28.8989,0,-305.343,-28.8989,-305.343	1/1:44:0,44,0:0:0:44,0:1549,0:-139.7,-13.2453,0,-139.7,-13.2453,-139.7	1/1:82:0,82,0:0:0:82,0:2845,0:-256.29,-24.6845,0,-256.29,-24.6845,-256.29	1/1:30:0,30,0:0:0:30,0:1045,0:-94.3575,-9.0309,0,-94.3575,-9.0309,-94.3575	1/1:78:0,78,0:0:0:78,0:2736,0:-246.483,-23.4803,0,-246.483,-23.4803,-246.483	1/1:89:0,88,0:0:0:88,0:3118,0:-280.577,-26.4906,0,-280.577,-26.4906,-280.577	1/1:87:0,87,0:0:0:87,0:3071,0:-276.618,-26.1896,0,-276.618,-26.1896,-276.618	1/2:138:0,72,63:0:0:72,63:2563,2214:-389.109,-180.216,-158.542,-208.909,0,-189.944	1/1:137:0,136,0:0:0:136,0:4815,0:-433.148,-40.9401,0,-433.148,-40.9401,-433.148	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/2:185:0,85,100:0:0:85,100:2996,3507:-529.661,-285.731,-260.143,-244.282,0,-214.179	1/1:30:0,30,0:0:0:30,0:1054,0:-95.1692,-9.0309,0,-95.1692,-9.0309,-95.1692	1/1:15:0,15,0:0:0:15,0:532,0:-48.2131,-4.51545,0,-48.2131,-4.51545,-48.2131	1/2:153:0,69,83:0:0:69,83:2441,2877:-432.628,-233.806,-213.035,-198.813,0,-173.827	1/2:15:0,8,7:0:0:8,7:288,252:-44.4141,-20.9194,-18.5111,-23.8545,0,-21.7473	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-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chr03	20198120	.	CG	CT,TT	157457	PASS	AB=0.467268,0.530361;ABP=22.6277,19.8876;AC=161,25;AF=0.865591,0.134409;AN=186;AO=5993,1127;CIGAR=1M1X,2X;DP=7131;DPB=7131;DPRA=0,1.24039;EPP=13016.6,2450.26;EPPR=7.35324;GTI=1;LEN=1,2;MEANALT=1.43011,2.125;MQM=59.4811,50.0293;MQMR=60;NS=93;NUMALT=2;ODDS=0.318169;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=214457,39892;QR=50;RO=2;RPL=0,0;RPP=13016.6,2450.26;RPPR=7.35324;RPR=5993,1127;RUN=1,1;SAF=5993,1127;SAP=13016.6,2450.26;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:58:0,25,33:0:0:25,33:900,1166:-168.497,-95.0613,-87.5356,-73.7919,0,-63.8579	1/2:66:0,41,25:0:0:41,25:1476,869:-191.213,-70.7789,-58.4367,-120.786,0,-113.26	1/2:174:0,89,85:0:0:89,85:3177,3009:-503.01,-244.048,-217.257,-259.316,0,-233.728	1/1:154:0,154,0:0:0:154,0:5489,0:-494.094,-46.3586,0,-494.094,-46.3586,-494.094	1/1:34:0,33,0:0:0:33,0:1188,0:-106.859,-9.93399,0,-106.859,-9.93399,-106.859	1/1:25:0,25,0:0:0:25,0:896,0:-80.9431,-7.52575,0,-80.9431,-7.52575,-80.9431	1/1:85:0,85,0:0:0:85,0:3048,0:-274.485,-25.5876,0,-274.485,-25.5876,-274.485	1/1:139:1,138,0:1:25:138,0:4929,0:-441.225,-39.3433,0,-441.526,-41.5421,-443.474	1/1:71:0,71,0:0:0:71,0:2555,0:-230.169,-21.3731,0,-230.169,-21.3731,-230.169	1/1:56:0,56,0:0:0:56,0:2008,0:-180.98,-16.8577,0,-180.98,-16.8577,-180.98	1/1:42:0,42,0:0:0:42,0:1512,0:-136.36,-12.6433,0,-136.36,-12.6433,-136.36	1/1:109:0,109,0:0:0:109,0:3908,0:-351.811,-32.8123,0,-351.811,-32.8123,-351.811	1/2:75:0,36,39:0:0:36,39:1288,1378:-217.112,-112.095,-101.258,-105.373,0,-93.6323	1/1:32:0,32,0:0:0:32,0:1130,0:-101.989,-9.63296,0,-101.989,-9.63296,-101.989	1/1:57:0,57,0:0:0:57,0:2048,0:-184.532,-17.1587,0,-184.532,-17.1587,-184.532	1/1:35:0,35,0:0:0:35,0:1260,0:-113.695,-10.5361,0,-113.695,-10.5361,-113.695	1/1:32:0,32,0:0:0:32,0:1143,0:-103.173,-9.63296,0,-103.173,-9.63296,-103.173	1/1:26:0,26,0:0:0:26,0:936,0:-84.5513,-7.82678,0,-84.5513,-7.82678,-84.5513	1/2:27:0,19,8:0:0:19,8:684,288:-79.0428,-23.2427,-17.5231,-56.154,0,-53.7457	1/1:158:0,158,0:0:0:158,0:5665,0:-509.905,-47.5627,0,-509.905,-47.5627,-509.905	1/1:110:0,110,0:0:0:110,0:3895,0:-350.743,-33.1133,0,-350.743,-33.1133,-350.743	1/1:110:0,110,0:0:0:110,0:3903,0:-351.346,-33.1133,0,-351.346,-33.1133,-351.346	1/1:56:0,56,0:0:0:56,0:2003,0:-180.526,-16.8577,0,-180.526,-16.8577,-180.526	1/1:15:0,15,0:0:0:15,0:532,0:-48.2088,-4.51545,0,-48.2088,-4.51545,-48.2088	1/1:95:0,95,0:0:0:95,0:3407,0:-306.796,-28.5979,0,-306.796,-28.5979,-306.796	1/2:221:0,100,119:0:0:100,119:3588,4228:-632.868,-340.244,-310.141,-292.714,0,-256.892	1/1:208:0,208,0:0:0:208,0:7436,0:-669.074,-62.6142,0,-669.074,-62.6142,-669.074	1/1:31:0,31,0:0:0:31,0:1116,0:-100.622,-9.33193,0,-100.622,-9.33193,-100.622	1/1:199:0,198,1:0:0:198,1:7112,28:-639.609,-59.6039,0,-637.393,-57.1084,-637.092	1/1:101:0,101,0:0:0:101,0:3616,0:-325.593,-30.404,0,-325.593,-30.404,-325.593	1/1:63:0,63,0:0:0:63,0:2252,0:-202.929,-18.9649,0,-202.929,-18.9649,-202.929	1/2:6:0,3,3:0:0:3,3:108,106:-17.7731,-8.95701,-8.05392,-9.17208,0,-8.26899	1/1:19:0,19,0:0:0:19,0:676,0:-61.168,-5.71957,0,-61.168,-5.71957,-61.168	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:161:0,161,0:0:0:161,0:5760,0:-518.366,-48.4658,0,-518.366,-48.4658,-518.366	1/1:63:0,63,0:0:0:63,0:2243,0:-202.114,-18.9649,0,-202.114,-18.9649,-202.114	1/2:33:0,20,13:0:0:20,13:720,468:-97.1884,-38.4395,-32.4189,-59.1082,0,-55.1948	.:.:.:.:.:.:.:.	1/2:177:0,113,64:0:0:113,64:4060,2283:-516.457,-185.304,-151.288,-331.509,0,-312.243	1/2:34:0,17,17:0:0:17,17:608,607:-98.8916,-49.3232,-44.2057,-49.9238,0,-44.8063	1/1:120:0,119,1:0:0:119,1:4272,36:-384.269,-35.8226,0,-381.559,-32.7775,-381.258	1/1:45:0,45,0:0:0:45,0:1620,0:-146.076,-13.5464,0,-146.076,-13.5464,-146.076	1/1:58:0,58,0:0:0:58,0:2069,0:-186.428,-17.4597,0,-186.428,-17.4597,-186.428	1/1:125:0,124,0:0:0:124,0:4443,0:-399.715,-37.3277,0,-399.715,-37.3277,-399.715	1/1:60:0,60,0:0:0:60,0:2148,0:-193.556,-18.0618,0,-193.556,-18.0618,-193.556	1/1:143:0,143,0:0:0:143,0:5135,0:-462.074,-43.0473,0,-462.074,-43.0473,-462.074	1/1:54:0,54,0:0:0:54,0:1919,0:-172.934,-16.2556,0,-172.934,-16.2556,-172.934	1/2:94:0,49,45:0:0:49,45:1744,1601:-272.125,-130.033,-115.282,-142.447,0,-128.9	1/1:51:0,50,1:0:0:50,1:1792,36:-161.134,-15.0515,0,-158.214,-11.7738,-157.913	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/2:95:0,52,43:0:0:52,43:1864,1527:-275.485,-123.617,-107.964,-152.222,0,-139.278	1/1:62:0,62,0:0:0:62,0:2226,0:-200.557,-18.6639,0,-200.557,-18.6639,-200.557	1/1:14:0,14,0:0:0:14,0:504,0:-45.6899,-4.21442,0,-45.6899,-4.21442,-45.6899	1/2:172:0,71,98:0:0:71,98:2539,3474:-488.542,-281.566,-260.193,-207.054,0,-177.554	1/2:56:0,18,38:0:0:18,38:644,1353:-162.629,-110.124,-104.705,-52.8614,0,-41.4222	1/2:15:0,7,8:0:0:7,8:248,286:-43.6735,-23.4886,-21.3814,-20.5391,0,-18.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chr03	20320634	.	CGTCTATG	TGTTTATA,CGTTTATG	101022	PASS	AB=0.504119,0.487644;ABP=3.18917,4.62012;AC=163,25;AF=0.867021,0.132979;AN=188;AO=4399,595;CIGAR=1X2M1X3M1X,3M1X4M;DP=5019;DPB=5022.75;DPRA=0,1.00571;EPP=9555.32,1295.04;EPPR=0;GTI=0;LEN=8,1;MEANALT=1.54255,2.39286;MQM=38.5238,59.721;MQMR=0;NS=94;NUMALT=2;ODDS=5.11904;PAIRED=0,0;PAIREDR=0;PAO=28,0;PQA=978,0;PQR=0;PRO=0;QA=153486,21163;QR=0;RO=0;RPL=0,0;RPP=9555.32,1295.04;RPPR=0;RPR=4399,595;RUN=1,1;SAF=0,0;SAP=9555.32,1295.04;SAR=4399,595;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,21,9:0:0:21,9:716,320:-80.9187,-26.0737,-19.7521,-54.8323,0,-52.123	1/2:59:0,32,26:0:0:32,26:1103,928:-158.918,-75.6862,-66.0532,-83.2547,0,-75.4279	1/2:119:0,54,64:0:0:54,64:1856,2262:-325.413,-184.285,-168.029,-141.185,0,-121.919	1/1:89:0,89,0:0:0:89,0:3105,0:-269.969,-26.7917,0,-269.969,-26.7917,-269.969	1/1:40:0,40,0:0:0:40,0:1408,0:-120.433,-12.0412,0,-120.433,-12.0412,-120.433	1/1:26:0,26,0:0:0:26,0:905,0:-77.6265,-7.82678,0,-77.6265,-7.82678,-77.6265	1/1:37:0,37,0:0:0:37,0:1306,0:-112.908,-11.1381,0,-112.908,-11.1381,-112.908	1/1:94:0,94,0:0:0:94,0:3321,0:-280.149,-28.2968,0,-280.149,-28.2968,-280.149	1/1:80:0,78,0:0:0:78,0:2741,0:-232.928,-23.4803,0,-232.928,-23.4803,-232.928	1/1:37:0,37,0:0:0:37,0:1317,0:-114.328,-11.1381,0,-114.328,-11.1381,-114.328	1/1:18:0,18,0:0:0:18,0:635,0:-55.3937,-5.41854,0,-55.3937,-5.41854,-55.3937	1/1:71:0,70,0:0:0:70,0:2465,0:-208.167,-21.0721,0,-208.167,-21.0721,-208.167	1/2:44:0,29,14:0:0:29,14:1020,504:-119.407,-41.2209,-32.491,-78.2903,0,-74.0759	1/1:31:0,31,0:0:0:31,0:1092,0:-95.0571,-9.33193,0,-95.0571,-9.33193,-95.0571	1/1:35:0,35,0:0:0:35,0:1222,0:-105.967,-10.5361,0,-105.967,-10.5361,-105.967	1/1:41:0,41,0:0:0:41,0:1426,0:-124.157,-12.3422,0,-124.157,-12.3422,-124.157	1/1:21:0,21,0:0:0:21,0:725,0:-61.2538,-6.32163,0,-61.2538,-6.32163,-61.2538	1/1:9:0,9,0:0:0:9,0:319,0:-27.4775,-2.70927,0,-27.4775,-2.70927,-27.4775	1/2:19:0,14,5:0:0:14,5:485,180:-52.293,-15.0469,-10.8325,-37.5978,0,-36.0927	1/1:100:0,98,0:0:0:98,0:3407,0:-294.209,-29.5009,0,-294.209,-29.5009,-294.209	1/1:194:0,194,0:0:0:194,0:6736,0:-583.34,-58.3998,0,-583.34,-58.3998,-583.34	1/1:102:0,102,0:0:0:102,0:3555,0:-294.779,-30.7051,0,-294.779,-30.7051,-294.779	1/1:48:0,48,0:0:0:48,0:1684,0:-145.504,-14.4494,0,-145.504,-14.4494,-145.504	1/1:25:0,25,0:0:0:25,0:859,0:-74.071,-7.52575,0,-74.071,-7.52575,-74.071	1/1:89:0,89,0:0:0:89,0:3128,0:-268.42,-26.7917,0,-268.42,-26.7917,-268.42	1/2:124:0,64,58:0:0:64,58:2229,2064:-332.438,-168.238,-148.972,-164.252,0,-146.793	1/1:160:0,160,0:0:0:160,0:5574,0:-481.205,-48.1648,0,-481.205,-48.1648,-481.205	1/1:17:0,17,0:0:0:17,0:590,0:-51.5769,-5.11751,0,-51.5769,-5.11751,-51.5769	1/1:110:0,110,0:0:0:110,0:3863,0:-316.556,-33.1133,0,-316.556,-33.1133,-316.556	1/1:49:0,48,0:0:0:48,0:1670,0:-144.386,-14.4494,0,-144.386,-14.4494,-144.386	1/1:69:0,69,0:0:0:69,0:2402,0:-207.866,-20.7711,0,-207.866,-20.7711,-207.866	1/2:8:0,5,3:0:0:5,3:180,104:-22.8391,-8.79971,-7.29456,-14.3855,0,-13.4824	1/1:10:0,10,0:0:0:10,0:357,0:-31.2306,-3.0103,0,-31.2306,-3.0103,-31.2306	1/1:5:0,5,0:0:0:5,0:173,0:-15.1396,-1.50515,0,-15.1396,-1.50515,-15.1396	1/1:7:0,5,0:0:0:5,0:174,0:-14.8347,-1.50515,0,-14.8347,-1.50515,-14.8347	1/1:18:0,18,0:0:0:18,0:622,0:-52.0023,-5.41854,0,-52.0023,-5.41854,-52.0023	1/1:96:0,96,0:0:0:96,0:3356,0:-278.644,-28.8989,0,-278.644,-28.8989,-278.644	1/1:65:0,65,0:0:0:65,0:2274,0:-196.755,-19.567,0,-196.755,-19.567,-196.755	1/2:35:0,19,15:0:0:19,15:668,536:-93.5103,-43.7536,-38.034,-49.7936,0,-45.2782	1/1:6:0,6,0:0:0:6,0:212,0:-18.7079,-1.80618,0,-18.7079,-1.80618,-18.7079	1/2:39:0,24,15:0:0:24,15:829,540:-108.53,-44.0609,-36.8361,-64.4596,0,-59.9442	1/2:20:0,11,8:0:0:11,8:373,284:-52.3059,-23.1363,-19.825,-29.156,0,-26.7477	1/1:103:0,101,1:0:0:101,1:3485,36:-302.322,-30.404,0,-299.384,-27.4498,-299.083	1/1:21:0,21,0:0:0:21,0:732,0:-63.96,-6.32163,0,-63.96,-6.32163,-63.96	1/1:27:0,27,0:0:0:27,0:928,0:-79.1652,-8.12781,0,-79.1652,-8.12781,-79.1652	1/1:76:0,76,0:0:0:76,0:2674,0:-222.473,-22.8783,0,-222.473,-22.8783,-222.473	1/1:62:0,61,0:0:0:61,0:2132,0:-181.261,-18.3628,0,-181.261,-18.3628,-181.261	1/1:106:0,106,0:0:0:106,0:3725,0:-323.562,-31.9092,0,-323.562,-31.9092,-323.562	1/1:70:0,70,0:0:0:70,0:2452,0:-211.404,-21.0721,0,-211.404,-21.0721,-211.404	1/2:41:0,20,20:0:0:20,20:708,720:-113.313,-58.7488,-52.7282,-54.5539,0,-48.5333	1/1:106:0,106,0:0:0:106,0:3727,0:-310.609,-31.9092,0,-310.609,-31.9092,-310.609	1/1:12:0,12,0:0:0:12,0:418,0:-36.6028,-3.61236,0,-36.6028,-3.61236,-36.6028	1/2:97:0,61,35:0:0:61,35:2133,1260:-263.547,-102.89,-84.5272,-160.729,0,-150.193	1/1:22:0,21,0:0:0:21,0:745,0:-61.5536,-6.32163,0,-61.5536,-6.32163,-61.5536	1/1:5:0,5,0:0:0:5,0:174,0:-15.1676,-1.50515,0,-15.1676,-1.50515,-15.1676	1/2:57:0,27,30:0:0:27,30:930,1076:-160.563,-87.9875,-79.8596,-72.9196,0,-63.8887	1/2:65:0,30,35:0:0:30,35:1048,1222:-180.435,-99.7435,-90.7126,-81.0316,0,-70.4956	1/2:11:0,3,8:0:0:3,8:96,273:-29.774,-22.4919,-21.5889,-7.59584,0,-5.1876	1/1:7:0,7,0:0:0:7,0:237,0:-20.257,-2.10721,0,-20.257,-2.10721,-20.257	1/1:59:0,59,0:0:0:59,0:2077,0:-178.553,-17.7608,0,-178.553,-17.7608,-178.553	1/1:70:0,70,0:0:0:70,0:2463,0:-214.038,-21.0721,0,-214.038,-21.0721,-214.038	1/1:9:0,9,0:0:0:9,0:305,0:-26.8859,-2.70927,0,-26.8859,-2.70927,-26.8859	1/1:82:0,82,0:0:0:82,0:2859,0:-237.13,-24.6845,0,-237.13,-24.6845,-237.13	1/1:125:0,124,1:0:0:124,1:4316,36:-371.685,-37.3277,0,-368.748,-34.0305,-368.447	1/1:45:0,45,0:0:0:45,0:1560,0:-134.491,-13.5464,0,-134.491,-13.5464,-134.491	1/1:26:0,26,0:0:0:26,0:905,0:-78.9324,-7.82678,0,-78.9324,-7.82678,-78.9324	1/1:117:0,116,0:0:0:116,0:4064,0:-348.741,-34.9195,0,-348.741,-34.9195,-348.741	1/2:79:0,25,54:0:0:25,54:865,1913:-223.091,-156.14,-148.615,-67.2884,0,-51.0328	1/1:13:0,13,0:0:0:13,0:446,0:-39.1841,-3.91339,0,-39.1841,-3.91339,-39.1841	1/1:31:0,31,0:0:0:31,0:1077,0:-90.1676,-9.33193,0,-90.1676,-9.33193,-90.1676	1/2:18:0,5,13:0:0:5,13:180,468:-51.8607,-38.5285,-37.0234,-13.6704,0,-9.75697	1/1:15:0,15,0:0:0:15,0:522,0:-45.6588,-4.51545,0,-45.6588,-4.51545,-45.6588	1/1:139:0,139,0:0:0:139,0:4851,0:-413.215,-41.8432,0,-413.215,-41.8432,-413.215	1/1:62:0,61,0:0:0:61,0:2125,0:-178.544,-18.3628,0,-178.544,-18.3628,-178.544	1/1:96:0,96,0:0:0:96,0:3367,0:-291.146,-28.8989,0,-291.146,-28.8989,-291.146	1/1:59:0,58,1:0:0:58,1:2052,36:-177.819,-17.4597,0,-174.881,-14.1625,-174.58	1/2:50:0,19,31:0:0:19,31:667,1116:-141.803,-91.4198,-85.7002,-50.7239,0,-41.392	1/2:36:0,15,21:0:0:15,21:513,756:-100.788,-62.0456,-57.5301,-39.0798,0,-32.7582	1/1:17:0,16,0:0:0:16,0:543,0:-45.9566,-4.81648,0,-45.9566,-4.81648,-45.9566	1/1:56:0,56,0:0:0:56,0:1931,0:-166.873,-16.8577,0,-166.873,-16.8577,-166.873	1/1:59:0,59,0:0:0:59,0:2048,0:-172.95,-17.7608,0,-172.95,-17.7608,-172.95	1/1:93:0,93,0:0:0:93,0:3248,0:-279.495,-27.9958,0,-279.495,-27.9958,-279.495	1/1:31:0,31,0:0:0:31,0:1059,0:-91.731,-9.33193,0,-91.731,-9.33193,-91.731	1/2:28:0,14,13:0:0:14,13:495,464:-75.9961,-37.9011,-33.6867,-38.1573,0,-34.2439	1/2:25:0,9,16:0:0:9,16:320,576:-72.3586,-47.3585,-44.6492,-25.3486,0,-20.5322	1/2:50:0,27,23:0:0:27,23:947,820:-140.671,-67.1887,-59.0609,-73.8295,0,-66.9058	1/1:5:0,5,0:0:0:5,0:170,0:-14.9364,-1.50515,0,-14.9364,-1.50515,-14.9364	1/1:43:0,43,0:0:0:43,0:1515,0:-128.556,-12.9443,0,-128.556,-12.9443,-128.556	1/1:48:0,48,0:0:0:48,0:1669,0:-140.564,-14.4494,0,-140.564,-14.4494,-140.564	1/2:39:0,21,18:0:0:21,18:706,644:-108.2,-52.8721,-46.5504,-55.671,0,-50.2525	1/2:74:0,41,33:0:0:41,33:1402,1137:-202.178,-92.6905,-80.3483,-109.825,0,-99.8911	1/2:47:0,22,25:0:0:22,25:753,888:-131.671,-72.7051,-66.0824,-59.3083,0,-51.7826	1/1:39:0,38,0:0:0:38,0:1309,0:-113.106,-11.4391,0,-113.106,-11.4391,-113.106	1/1:50:0,50,0:0:0:50,0:1731,0:-149.804,-15.0515,0,-149.804,-15.0515,-149.804
chr03	20323116	.	TTTA	CTTG,TTTG	282539	PASS	AB=0.383053,0.615206;ABP=412.374,400.275;AC=161,25;AF=0.865591,0.134409;AN=186;AO=8928,2145;CIGAR=1X2M1X,3M1X;DP=11123;DPB=12864.5;DPRA=0,1.54619;EPP=19389.9,4660.82;EPPR=0;GTI=5;LEN=4,1;MEANALT=1.84946,2.41176;MQM=59.9654,59.9972;MQMR=0;NS=93;NUMALT=2;ODDS=0.720433;PAIRED=0,0;PAIREDR=0;PAO=2370,1173.5;PQA=80123,39141.5;PQR=39080.5;PRO=1171.5;QA=310480,75779;QR=0;RO=0;RPL=1431,989;RPP=8952.64,31.2435;RPPR=0;RPR=7497,1156;RUN=1,1;SAF=1431,989;SAP=8952.64,31.2435;SAR=7497,1156;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:94:0,51,43:0:0:51,43:1725,1493:-261.124,-121.331,-105.978,-139.763,0,-126.819	1/2:98:0,50,47:0:0:50,47:1735,1653:-275.57,-134.544,-119.493,-141.02,0,-126.871	1/2:140:0,78,62:0:0:78,62:2757,2211:-404.75,-180.219,-156.739,-224.522,0,-205.858	1/1:194:0,194,0:0:0:194,0:6781,0:-610.019,-58.3998,0,-610.019,-58.3998,-610.019	1/1:91:0,90,0:0:0:90,0:3130,0:-281.563,-27.0927,0,-281.563,-27.0927,-281.563	1/1:37:0,37,0:0:0:37,0:1311,0:-117.922,-11.1381,0,-117.922,-11.1381,-117.922	1/1:130:0,130,0:0:0:130,0:4540,0:-408.389,-39.1339,0,-408.389,-39.1339,-408.389	1/1:129:0,128,0:0:0:128,0:4417,0:-397.328,-38.5318,0,-397.328,-38.5318,-397.328	1/1:124:0,124,0:0:0:124,0:4304,0:-387.173,-37.3277,0,-387.173,-37.3277,-387.173	1/1:94:0,94,0:0:0:94,0:3236,0:-291.102,-28.2968,0,-291.102,-28.2968,-291.102	1/1:64:0,64,0:0:0:64,0:2195,0:-197.812,-19.2659,0,-197.812,-19.2659,-197.812	1/1:141:0,141,0:0:0:141,0:4894,0:-440.239,-42.4452,0,-440.239,-42.4452,-440.239	1/2:85:0,48,37:0:0:48,37:1651,1315:-241.216,-107.144,-92.6942,-134.06,0,-122.922	1/1:61:0,60,0:0:0:60,0:2121,0:-190.776,-18.0618,0,-190.776,-18.0618,-190.776	1/1:66:0,65,0:0:0:65,0:2285,0:-205.543,-19.567,0,-205.543,-19.567,-205.543	1/1:49:0,49,0:0:0:49,0:1709,0:-153.698,-14.7505,0,-153.698,-14.7505,-153.698	1/1:38:0,37,0:0:0:37,0:1301,0:-117.027,-11.1381,0,-117.027,-11.1381,-117.027	1/1:39:0,37,2:0:0:37,2:1285,72:-115.586,-11.1381,0,-109.711,-5.26424,-109.109	1/2:45:0,25,20:0:0:25,20:875,707:-128.75,-57.5669,-50.0412,-71.1735,0,-65.1529	1/1:183:0,181,1:0:0:181,1:6317,36:-568.274,-54.4864,0,-565.336,-51.5493,-565.035	1/1:195:0,193,0:0:0:193,0:6769,0:-608.951,-58.0988,0,-608.951,-58.0988,-608.951	1/1:221:0,216,0:0:0:216,0:7494,0:-674.179,-65.0225,0,-674.179,-65.0225,-674.179	1/1:74:0,74,0:0:0:74,0:2522,0:-226.901,-22.2762,0,-226.901,-22.2762,-226.901	1/1:111:0,111,0:0:0:111,0:3833,0:-344.769,-33.4143,0,-344.769,-33.4143,-344.769	1/1:86:0,85,0:0:0:85,0:2988,0:-268.811,-25.5876,0,-268.811,-25.5876,-268.811	1/2:651:0,315,334:0:0:315,334:10889,11770:-1843.13,-958.349,-863.524,-884.843,0,-784.299	1/1:243:0,242,0:0:0:242,0:8359,0:-751.994,-72.8493,0,-751.994,-72.8493,-751.994	1/1:40:0,40,0:0:0:40,0:1375,0:-123.665,-12.0412,0,-123.665,-12.0412,-123.665	1/1:534:0,532,1:0:0:532,1:18588,36:-1672.24,-160.148,0,-1669.31,-157.186,-1669.01	1/1:103:0,95,8:0:0:95,8:3323,284:-298.854,-28.5979,0,-275.714,-5.47326,-273.306	1/1:118:0,118,0:0:0:118,0:4084,0:-367.394,-35.5215,0,-367.394,-35.5215,-367.394	1/2:11:0,3,8:0:0:3,8:107,288:-32.5808,-23.8592,-22.9561,-9.07908,0,-6.67084	1/1:26:0,26,0:0:0:26,0:900,0:-81.312,-7.82678,0,-81.312,-7.82678,-81.312	1/1:6:0,6,0:0:0:6,0:213,0:-19.1544,-1.80618,0,-19.1544,-1.80618,-19.1544	.:.:.:.:.:.:.:.	1/1:29:0,29,0:0:0:29,0:1014,0:-91.1873,-8.72987,0,-91.1873,-8.72987,-91.1873	1/1:475:0,472,2:0:0:472,2:16466,72:-1481.3,-142.086,0,-1475.42,-136.211,-1474.82	1/1:83:0,80,1:0:0:80,1:2778,36:-249.917,-24.0824,0,-246.98,-21.1439,-246.679	1/2:57:0,34,23:0:0:34,23:1195,811:-163.275,-66.0148,-55.7798,-97.2454,0,-90.3218	1/1:7:0,7,0:0:0:7,0:239,0:-21.8428,-2.10721,0,-21.8428,-2.10721,-21.8428	1/2:194:0,61,133:0:0:61,133:2139,4708:-557.492,-383.428,-365.065,-174,0,-133.963	1/2:50:0,24,25:0:0:24,25:842,892:-141.392,-72.8692,-65.6445,-68.6684,0,-61.1426	1/1:207:0,205,0:0:0:205,0:7063,0:-635.386,-61.7112,0,-635.386,-61.7112,-635.386	1/1:65:0,65,0:0:0:65,0:2284,0:-205.475,-19.567,0,-205.475,-19.567,-205.475	1/1:73:0,73,0:0:0:73,0:2508,0:-225.626,-21.9752,0,-225.626,-21.9752,-225.626	1/1:208:0,207,0:0:0:207,0:7121,0:-640.612,-62.3132,0,-640.612,-62.3132,-640.612	1/1:104:0,104,0:0:0:104,0:3551,0:-319.43,-31.3071,0,-319.43,-31.3071,-319.43	1/1:134:0,134,0:0:0:134,0:4683,0:-421.274,-40.338,0,-421.274,-40.338,-421.274	1/1:112:0,111,0:0:0:111,0:3881,0:-349.161,-33.4143,0,-349.161,-33.4143,-349.161	1/2:215:0,43,172:0:0:43,172:1491,6150:-623.008,-501.822,-488.877,-121.535,0,-69.7579	1/1:240:0,238,0:0:0:238,0:8327,0:-749.134,-71.6451,0,-749.134,-71.6451,-749.134	1/1:18:0,17,0:0:0:17,0:600,0:-54.0737,-5.11751,0,-54.0737,-5.11751,-54.0737	1/2:147:0,74,73:0:0:74,73:2591,2556:-418.752,-207.945,-185.669,-210.794,0,-188.819	1/1:85:0,84,0:0:0:84,0:2913,0:-262.148,-25.2865,0,-262.148,-25.2865,-262.148	1/1:14:0,14,0:0:0:14,0:481,0:-43.246,-4.21442,0,-43.246,-4.21442,-43.246	1/2:309:0,97,212:0:0:97,212:3345,7489:-881.564,-609.84,-580.64,-271.672,0,-207.853	1/2:101:0,24,77:0:0:24,77:841,2692:-287.776,-219.343,-212.118,-68.7829,0,-45.6036	1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chr03	20353340	.	G	T	16465.6	PASS	AB=0.494299;ABP=3.4312;AC=24;AF=0.12766;AN=188;AO=743;CIGAR=1X;DP=4713;DPB=4713;DPRA=1.22551;EPP=23.1439;EPPR=6.87167;GTI=1;LEN=1;MEANALT=1;MQM=59.9892;MQMR=59.9879;NS=94;NUMALT=1;ODDS=0.487175;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26501;QR=140364;RO=3968;RPL=0;RPP=1616.41;RPPR=8619.41;RPR=743;RUN=1;SAF=330;SAP=23.1439;SAR=413;SRF=2026;SRP=6.87167;SRR=1942;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.0997	0/1:62:30,32:30:1058:32:1121:-82.5319,0,-76.8657	0/1:60:38,22:38:1341:22:788:-53.183,0,-102.926	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:29:28,1:28:972:1:36:0,-5.13159,-84.1909	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/0:35:35,0:35:1230:0:0:0,-10.536,-111.002	0/0:34:33,1:33:1180:1:36:0,-6.63674,-102.91	0/0:22:22,0:22:777:0:0:0,-6.62266,-70.2504	0/0:73:73,0:73:2589:0:0:0,-21.9752,-233.258	0/0:128:128,0:128:4554:0:0:0,-38.5318,-410.025	0/1:104:51,53:51:1785:53:1904:-140.331,0,-129.621	0/0:84:84,0:84:2970:0:0:0,-25.2865,-267.532	0/0:77:76,0:76:2696:0:0:0,-22.8783,-242.523	0/0:85:85,0:85:3024:0:0:0,-25.5875,-272.389	0/0:79:79,0:79:2796:0:0:0,-23.7814,-251.88	0/0:91:91,0:91:3217:0:0:0,-27.3937,-289.751	0/1:79:43,36:43:1516:36:1296:-93.1626,0,-112.949	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:57:57,0:57:2003:0:0:0,-17.1587,-180.541	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:42:42,0:42:1483:0:0:0,-12.6433,-133.764	0/0:25:23,2:23:813:2:72:0,-0.689027,-66.6524	0/1:56:24,32:24:828:32:1152:-87.1325,0,-57.9756	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:78:78,0:78:2743:0:0:0,-23.4803,-247.112	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:196:195,0:195:6927:0:0:0,-58.7008,-623.138	0/0:28:28,0:28:987:0:0:0,-8.42884,-89.143	0/1:83:44,39:44:1561:39:1386:-100.052,0,-115.794	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:45:29,16:29:1031:16:572:-38.2671,0,-79.5563	0/1:69:30,39:30:1048:39:1380:-103.726,0,-73.8563	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:99:99,0:99:3525:0:0:0,-29.802,-317.459	0/0:94:94,0:94:3333:0:0:0,-28.2968,-300.186	0/0:22:22,0:22:762:0:0:0,-6.62266,-68.8951	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:40:39,1:39:1366:1:36:0,-8.44292,-119.636	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:42:19,23:19:676:23:824:-61.8401,0,-48.5247	0/0:36:36,0:36:1269:0:0:0,-10.8371,-114.511	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:42:19,23:19:658:23:808:-60.3969,0,-46.898	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:42:23,19:23:805:19:684:-49.2471,0,-60.1242	0/1:15:10,5:10:351:5:172:-11.3025,0,-27.4112	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:90:90,0:90:3172:0:0:0,-27.0927,-285.703	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:47:46,1:46:1597:1:32:0,-10.9491,-140.815	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:24:24,0:24:841:0:0:0,-7.22472,-76.0064	0/0:46:46,0:46:1590:0:0:0,-13.8474,-143.383	0/1:27:12,15:12:419:15:525:-39.4502,0,-29.9149	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:34:34,0:34:1183:0:0:0,-10.235,-106.771	0/1:110:61,49:61:2149:49:1743:-124.037,0,-160.56	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:20:20,0:20:697:0:0:0,-6.0206,-63.0507	0/0:61:61,0:61:2166:0:0:0,-18.3628,-195.206	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.282	0/1:43:18,25:18:624:25:887:-67.2038,0,-43.5371	0/1:39:22,17:22:784:17:612:-43.6733,0,-59.1437	0/0:8:8,0:8:260:0:0:0,-2.40824,-23.7163	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:51:51,0:51:1785:0:0:0,-15.3525,-160.924	0/0:92:92,0:92:3257:0:0:0,-27.6948,-293.352	0/0:116:116,0:116:4132:0:0:0,-34.9195,-372.063	0/1:107:51,56:51:1832:56:1995:-147.613,0,-132.951	0/1:101:51,50:51:1802:50:1787:-130.708,0,-132.054	0/1:149:76,73:76:2702:73:2597:-189.123,0,-198.568	0/0:40:40,0:40:1415:0:0:0,-12.0412,-127.647	0/0:81:81,0:81:2868:0:0:0,-24.3834,-258.357	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/1:55:32,23:32:1106:23:828:-58.2875,0,-83.2859	0/1:77:36,41:36:1276:41:1468:-109.237,0,-91.9638	0/1:56:18,38:18:601:38:1368:-106.563,0,-37.5444	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/0:163:163,0:163:5734:0:0:0,-49.0679,-516.178
chr03	20391382	.	A	C	12835.3	PASS	AB=0.548834;ABP=31.4294;AC=25;AF=0.132979;AN=188;AO=759;CIGAR=1X;DP=4727;DPB=4727;DPRA=1.12532;EPP=1651.16;EPPR=8617.24;GTI=1;LEN=1;MEANALT=1;MQM=59.9671;MQMR=59.9819;NS=94;NUMALT=1;ODDS=0.397711;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27074;QR=139511;RO=3967;RPL=0;RPP=1651.16;RPPR=8617.24;RPR=759;RUN=1;SAF=759;SAP=1651.16;SAR=0;SRF=3967;SRP=8617.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:7,11:7:248:11:387:-29.7474,0,-17.2278	0/1:77:38,39:38:1307:39:1396:-102.76,0,-94.7437	0/1:55:24,31:24:814:31:1108:-83.473,0,-57.0128	0/0:92:92,0:92:3216:0:0:0,-27.6948,-289.661	0/0:51:51,0:51:1794:0:0:0,-15.3525,-161.738	0/0:33:33,0:33:1130:0:0:0,-9.93399,-102.001	0/0:59:59,0:59:2063:0:0:0,-17.7608,-185.936	0/0:101:101,0:101:3566:0:0:0,-30.404,-321.148	0/0:52:52,0:52:1825:0:0:0,-15.6536,-164.527	0/0:68:68,0:68:2391:0:0:0,-20.47,-215.443	0/0:49:49,0:49:1736:0:0:0,-14.7505,-156.525	0/0:62:62,0:62:2185:0:0:0,-18.6639,-196.915	0/1:68:36,32:36:1269:32:1144:-82.7995,0,-94.0407	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:55:55,0:55:1945:0:0:0,-16.5566,-175.322	0/0:51:51,0:51:1805:0:0:0,-15.3525,-162.73	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/1:52:17,35:17:600:35:1252:-97.3314,0,-38.6756	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:61:61,0:61:2150:0:0:0,-18.3628,-193.695	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:35:34,1:34:1196:1:36:0,-6.93777,-104.347	0/0:39:39,0:39:1350:0:0:0,-11.7402,-121.794	0/0:43:43,0:43:1509:0:0:0,-12.9443,-136.101	0/1:85:33,52:33:1161:52:1868:-142.812,0,-79.2072	0/0:102:102,0:102:3484:0:0:0,-30.7051,-313.771	0/0:41:41,0:41:1441:0:0:0,-12.3422,-129.984	0/0:64:64,0:64:2250:0:0:0,-19.2659,-202.761	0/0:33:33,0:33:1161:0:0:0,-9.93399,-104.795	0/0:72:71,1:71:2471:1:21:0,-19.5742,-220.542	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:197:0:0:0,-1.80618,-18.0513	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:139:139,0:139:4945:0:0:0,-41.8432,-445.202	0/0:44:44,0:44:1489:0:0:0,-13.2453,-134.292	0/1:55:28,27:28:996:27:960:-70.1596,0,-73.3982	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/1:75:35,40:35:1241:40:1416:-105.114,0,-89.4153	0/1:38:17,21:17:597:21:743:-55.7542,0,-42.617	0/0:85:85,0:85:2930:0:0:0,-25.5875,-263.154	0/0:55:55,0:55:1956:0:0:0,-16.5566,-176.316	0/0:48:48,0:48:1685:0:0:0,-14.4494,-151.934	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.097	0/0:56:56,0:56:1977:0:0:0,-16.8577,-178.203	0/0:63:63,0:63:2176:0:0:0,-18.9649,-196.099	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.554	0/1:63:33,30:33:1165:30:1068:-77.4672,0,-86.1901	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:69:34,35:34:1201:35:1252:-92.214,0,-87.6226	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:16:16,0:16:546:0:0:0,-4.81648,-49.4593	0/1:54:27,27:27:957:27:972:-71.5423,0,-70.1882	0/1:27:10,17:10:356:17:604:-46.5628,0,-24.2534	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:47:47,0:47:1637:0:0:0,-14.1484,-147.613	0/0:63:61,2:61:2144:2:72:0,-12.1282,-186.392	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:89:89,0:89:3089:0:0:0,-26.7917,-278.236	0/0:84:84,0:84:2981:0:0:0,-25.2865,-268.522	0/0:38:36,2:36:1273:2:72:0,-4.60242,-108.034	0/0:37:37,0:37:1294:0:0:0,-11.1381,-116.757	0/0:61:61,0:61:2150:0:0:0,-18.3628,-193.764	0/1:44:13,31:13:449:31:1108:-86.7857,0,-27.4922	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.976	0/1:57:25,32:25:865:32:1144:-86.1108,0,-61.0045	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:53:52,0:52:1834:0:0:0,-15.6536,-164.977	0/0:51:51,0:51:1789:0:0:0,-15.3525,-161.29	0/0:91:91,0:91:3206:0:0:0,-27.3937,-288.763	0/1:43:16,27:16:564:27:972:-74.8536,0,-38.146	0/1:91:44,47:44:1500:47:1668:-123.014,0,-107.89	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:76:76,0:76:2678:0:0:0,-22.8783,-241.264	0/0:51:51,0:51:1779:0:0:0,-15.3525,-160.387	0/0:101:101,0:101:3551:0:0:0,-30.404,-319.798	0/0:63:63,0:63:2236:0:0:0,-18.9649,-201.504	0/1:45:19,26:19:676:26:927:-70.201,0,-47.6216	0/1:78:33,45:33:1165:45:1596:-120.449,0,-81.6747	0/1:110:56,54:56:1973:54:1931:-140.953,0,-144.73	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:35:12,23:12:413:23:827:-64.218,0,-26.9618	0/1:69:34,35:34:1212:35:1251:-92.1232,0,-88.6153	0/1:56:24,32:24:864:32:1135:-85.6004,0,-61.2249	0/0:47:47,0:47:1641:0:0:0,-14.1484,-147.976	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.89
chr03	20399248	.	A	G	68910.7	PASS	AB=0.61136;ABP=75.0714;AC=163;AF=0.876344;AN=186;AO=3102;CIGAR=1X;DP=3368;DPB=3368;DPRA=0;EPP=6678.25;EPPR=563.283;GTI=4;LEN=1;MEANALT=1.04301;MQM=59.6431;MQMR=59.8855;NS=93;NUMALT=1;ODDS=0.836392;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109868;QR=9376;RO=262;RPL=3095;RPP=6678.25;RPPR=563.283;RPR=7;RUN=1;SAF=0;SAP=6738.92;SAR=3102;SRF=0;SRP=571.936;SRR=262;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:10,20:10:356:20:716:-55.7286,0,-23.3503	0/1:15:3,12:3:108:12:428:-34.3434,0,-5.55972	0/1:45:11,34:11:396:34:1212:-95.6334,0,-22.4364	1/1:99:0,99:0:0:99:3505:-315.54,-29.802,0	1/1:29:0,29:0:0:29:1024:-92.3882,-8.72987,0	1/1:17:0,17:0:0:17:599:-54.2381,-5.11751,0	1/1:22:0,22:0:0:22:771:-69.7103,-6.62266,0	1/1:71:0,71:0:0:71:2496:-224.873,-21.3731,0	1/1:48:0,48:0:0:48:1707:-153.915,-14.4494,0	1/1:37:0,37:0:0:37:1315:-118.643,-11.1381,0	1/1:6:0,6:0:0:6:203:-18.6012,-1.80618,0	1/1:44:0,44:0:0:44:1538:-138.694,-13.2453,0	0/1:19:12,7:12:432:7:252:-17.2649,0,-33.5016	1/1:17:0,17:0:0:17:608:-55.0474,-5.11751,0	1/1:20:0,19:0:0:19:676:-60.9556,-5.71957,0	1/1:17:0,17:0:0:17:600:-54.1293,-5.11751,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:13:0,13:0:0:13:455:-41.282,-3.91339,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:24:0,24:0:0:24:847:-76.544,-7.22472,0	1/1:51:0,51:0:0:51:1795:-161.802,-15.3525,0	1/1:22:0,22:0:0:22:788:-71.2439,-6.62266,0	1/1:67:0,67:0:0:67:2383:-214.7,-20.169,0	1/1:34:0,34:0:0:34:1212:-109.384,-10.235,0	1/1:22:0,22:0:0:22:772:-69.8013,-6.62266,0	0/1:66:17,49:17:608:49:1736:-136.653,0,-35.184	1/1:86:0,86:0:0:86:3038:-273.614,-25.8886,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:69:0,69:0:0:69:2453:-220.244,-20.7711,0	1/1:73:2,71:2:72:71:2529:-220.866,-15.1385,0	1/1:65:0,65:0:0:65:2323:-209.328,-19.567,0	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	1/1:11:0,11:0:0:11:384:-34.893,-3.31133,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:65:0,65:0:0:65:2296:-206.883,-19.567,0	1/1:45:0,45:0:0:45:1607:-144.915,-13.5464,0	0/1:18:11,7:11:396:7:240:-16.5128,0,-30.5642	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:51:25,26:25:896:26:907:-66.5824,0,-65.6078	0/1:15:6,9:6:216:9:303:-23.0797,0,-15.2751	1/1:88:0,88:0:0:88:3144:-283.186,-26.4906,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:18:0,18:0:0:18:602:-54.492,-5.41854,0	1/1:49:0,49:0:0:49:1726:-155.623,-14.7505,0	1/1:57:0,57:0:0:57:2023:-182.263,-17.1587,0	1/1:57:0,57:0:0:57:2022:-182.247,-17.1587,0	1/1:47:0,47:0:0:47:1659:-149.508,-14.1484,0	0/1:34:14,19:14:500:19:671:-50.4153,0,-35.0425	1/1:45:0,45:0:0:45:1600:-144.228,-13.5464,0	.:.:.:.:.:.:.:.	0/1:44:19,25:19:684:25:888:-66.9855,0,-48.0154	1/1:25:0,25:0:0:25:896:-80.9557,-7.52575,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	0/1:51:12,39:12:432:39:1378:-108.96,0,-23.8687	1/1:15:1,14:1:36:14:473:-39.2924,-0.917175,0	1/1:4:0,4:0:0:4:144:-13.3127,-1.20412,0	1/1:17:0,17:0:0:17:583:-52.7924,-5.11751,0	1/1:49:0,49:0:0:49:1756:-158.322,-14.7505,0	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:95:0,95:0:0:95:3368:-303.319,-28.5979,0	1/1:73:0,73:0:0:73:2596:-233.86,-21.9752,0	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	1/1:28:0,27:0:0:27:956:-85.9948,-8.12781,0	1/1:80:0,80:0:0:80:2837:-255.561,-24.0824,0	0/1:33:16,17:16:563:17:608:-45.118,0,-41.0652	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:30:12,18:12:432:18:640:-48.8975,0,-30.1903	1/1:23:0,23:0:0:23:824:-74.4717,-6.92369,0	1/1:66:0,66:0:0:66:2347:-211.472,-19.868,0	1/1:48:0,48:0:0:48:1708:-153.342,-14.4494,0	1/1:111:0,111:0:0:111:3938:-354.586,-33.4143,0	1/1:76:0,76:0:0:76:2686:-241.924,-22.8783,0	0/1:37:7,30:7:252:30:1064:-84.9336,0,-11.8908	0/1:32:5,27:5:176:27:963:-77.353,0,-6.55206	1/1:18:0,18:0:0:18:622:-56.2939,-5.41854,0	1/1:34:0,34:0:0:34:1208:-109.018,-10.235,0	1/1:36:0,36:0:0:36:1258:-113.513,-10.8371,0	1/1:72:0,71:0:0:71:2540:-228.482,-21.3731,0	1/1:54:0,54:0:0:54:1889:-170.261,-16.2556,0	0/1:27:14,13:14:500:13:456:-33.2427,0,-37.2084	0/1:11:7,4:7:248:4:140:-9.63325,0,-19.3529	0/1:35:22,13:22:777:13:460:-31.197,0,-59.7143	1/1:29:0,29:0:0:29:1032:-93.1926,-8.72987,0	1/1:18:0,18:0:0:18:631:-56.9167,-5.41854,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:6:2,4:2:72:4:140:-11.1337,0,-5.03054	0/1:35:16,19:16:576:19:672:-50.2643,0,-41.6389	0/1:22:14,8:14:504:8:288:-19.5575,0,-39.0754	1/1:86:0,86:0:0:86:3035:-273.372,-25.8886,0	1/1:40:0,40:0:0:40:1428:-128.815,-12.0412,0
chr03	20418790	.	A	G	30398.3	PASS	AB=0.533273;ABP=34.656;AC=24;AF=0.12766;AN=188;AO=1783;CIGAR=1X;DP=12498;DPB=12498;DPRA=1.19561;EPP=3874.75;EPPR=23157.5;GTI=0;LEN=1;MEANALT=1.02632;MQM=59.9652;MQMR=59.9891;NS=94;NUMALT=1;ODDS=0.952482;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63502;QR=384075;RO=10711;RPL=1777;RPP=3822.81;RPPR=23001.8;RPR=6;RUN=1;SAF=1777;SAP=3822.81;SAR=6;SRF=10693;SRP=23105.6;SRR=18;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:14,15:14:504:15:536:-39.8449,0,-36.9682	0/1:218:111,107:111:3992:107:3811:-277.564,0,-293.844	0/1:167:80,87:80:2868:87:3105:-229.404,0,-208.085	0/0:312:311,0:311:11152:0:0:0,-93.6203,-1003.21	0/0:98:96,2:96:3421:2:72:0,-22.6642,-301.267	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:180:180,0:180:6453:0:0:0,-54.1854,-580.853	0/0:225:225,0:225:8071:0:0:0,-67.7317,-726.405	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.794	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.753	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.845	0/0:83:82,0:82:2944:0:0:0,-24.6845,-264.834	0/1:80:38,42:38:1368:42:1496:-110.852,0,-99.3384	0/0:117:116,1:116:4159:1:36:0,-31.6222,-370.893	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:64:63,1:63:2256:1:36:0,-15.6676,-199.705	0/0:103:102,1:102:3656:1:36:0,-27.4078,-325.645	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:48:28,20:28:1008:20:703:-49.1441,0,-76.5869	0/0:342:342,0:342:12242:0:0:0,-102.952,-1101.62	0/0:183:183,0:183:6544:0:0:0,-55.0885,-589.044	0/0:179:179,0:179:6401:0:0:0,-53.8844,-576.178	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:104:104,0:104:3711:0:0:0,-31.3071,-334.191	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/1:442:186,256:186:6672:256:9115:-686.724,0,-467.5	0/0:270:270,0:270:9676:0:0:0,-81.2781,-870.787	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:367:366,1:366:13152:1:36:0,-106.88,-1179.88	0/0:268:262,6:262:9399:6:216:0,-60.8855,-826.078	0/0:129:126,3:126:4508:3:108:0,-28.7577,-395.803	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:239:239,0:239:8600:0:0:0,-71.9462,-773.99	0/0:250:249,1:249:8931:1:36:0,-71.6592,-800.171	0/1:99:38,61:38:1359:61:2149:-163.874,0,-92.8079	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:202:86,115:86:3080:115:4099:-308.227,0,-216.561	0/1:41:16,25:16:576:25:891:-68.1665,0,-39.8328	0/0:158:158,0:158:5676:0:0:0,-47.5627,-510.957	0/0:88:88,0:88:3151:0:0:0,-26.4906,-283.814	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:198:198,0:198:7120:0:0:0,-59.6039,-640.854	0/0:260:260,0:260:9319:0:0:0,-78.2678,-838.673	0/0:141:141,0:141:5051:0:0:0,-42.4452,-454.734	0/1:234:117,117:117:4204:117:4198:-307.556,0,-308.098	0/0:145:145,0:145:5189:0:0:0,-43.6493,-467.148	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:205:111,94:111:3976:94:3335:-238.655,0,-296.319	0/0:105:104,1:104:3736:1:36:0,-28.0099,-332.841	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:241:120,121:120:4293:121:4335:-317.776,0,-313.997	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:121:121,0:121:4329:0:0:0,-36.4246,-389.784	0/0:195:193,2:193:6908:2:72:0,-51.8641,-614.948	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:281:280,0:280:10056:0:0:0,-84.2884,-904.61	0/0:327:324,3:324:11628:3:108:0,-88.3616,-1036.31	0/0:67:63,4:63:2256:4:144:0,-6.85539,-189.989	0/0:154:154,0:154:5532:0:0:0,-46.3586,-498.003	0/0:197:197,0:197:7072:0:0:0,-59.3029,-636.538	0/1:194:61,133:61:2192:133:4760:-370.158,0,-139.146	0/0:42:41,1:41:1468:1:36:0,-9.04498,-128.818	0/0:115:115,0:115:4117:0:0:0,-34.6184,-370.713	0/1:103:60,43:60:2152:43:1548:-108.607,0,-162.941	0/0:39:39,0:39:1377:0:0:0,-11.7402,-124.227	0/0:192:192,0:192:6884:0:0:0,-57.7978,-619.627	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/0:230:230,0:230:8211:0:0:0,-69.2369,-739	0/0:216:216,0:216:7764:0:0:0,-65.0225,-698.787	0/1:220:98,122:98:3503:122:4337:-324.28,0,-249.254	0/1:149:74,75:74:2656:75:2684:-196.952,0,-194.432	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/0:175:174,1:174:6244:1:36:0,-49.082,-558.455	0/0:157:157,0:157:5632:0:0:0,-47.2617,-506.999	0/0:273:273,0:273:9788:0:0:0,-82.1812,-880.844	0/0:129:129,0:129:4632:0:0:0,-38.8329,-417.041	0/1:88:40,48:40:1436:48:1720:-128.595,0,-103.047	0/1:87:47,40:47:1692:40:1411:-101.097,0,-126.377	0/1:179:96,83:96:3444:83:2926:-209.689,0,-256.288	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:92:92,0:92:3299:0:0:0,-27.6948,-297.042	0/1:67:29,38:29:1044:38:1360:-102.532,0,-73.7348	0/1:105:41,64:41:1476:64:2251:-171.243,0,-101.528	0/1:73:31,42:31:1116:42:1472:-110.797,0,-78.7765	0/0:215:215,0:215:7715:0:0:0,-64.7214,-694.335	0/0:143:143,0:143:5115:0:0:0,-43.0473,-460.492
chr03	20418845	.	C	A	26340.9	PASS	AB=0.493515;ABP=4.16508;AC=25;AF=0.132979;AN=188;AO=1579;CIGAR=1X;DP=11493;DPB=11493;DPRA=1.21218;EPP=3423.08;EPPR=21338.1;GTI=1;LEN=1;MEANALT=1.05263;MQM=59.9474;MQMR=59.976;NS=94;NUMALT=1;ODDS=2.21387;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56478;QR=354257;RO=9909;RPL=1;RPP=3423.08;RPPR=21320.8;RPR=1578;RUN=1;SAF=0;SAP=3431.77;SAR=1579;SRF=2;SRP=21502.8;SRR=9907;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:15,3:15:532:3:108:-4.65663,0,-42.7945	0/1:168:97,71:97:3463:71:2535:-177.828,0,-261.309	0/1:133:54,79:54:1932:79:2836:-215.441,0,-134.12	0/0:300:299,1:299:10704:1:36:0,-86.7107,-959.04	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/0:103:102,1:102:3652:1:36:0,-27.4078,-325.23	0/0:167:167,0:167:5984:0:0:0,-50.272,-538.662	0/0:128:128,0:128:4573:0:0:0,-38.5318,-411.735	0/0:115:113,0:113:4033:0:0:0,-34.0164,-362.792	0/0:117:117,0:117:4181:0:0:0,-35.2205,-376.471	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:100:100,0:100:3571:0:0:0,-30.103,-321.598	0/1:94:57,37:57:2027:37:1332:-91.881,0,-154.135	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/0:93:93,0:93:3319:0:0:0,-27.9958,-298.928	0/0:60:60,0:60:2147:0:0:0,-18.0618,-193.497	0/0:99:99,0:99:3523:0:0:0,-29.802,-317.278	0/0:73:73,0:73:2598:0:0:0,-21.9752,-234.068	0/1:81:46,35:46:1635:35:1251:-88.5108,0,-122.865	0/0:275:275,0:275:9840:0:0:0,-82.7832,-885.542	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/0:169:169,0:169:6037:0:0:0,-50.8741,-543.434	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.546	0/0:105:105,0:105:3752:0:0:0,-31.6081,-337.881	0/1:390:185,205:185:6617:205:7304:-539.999,0,-478.207	0/0:252:252,0:252:9018:0:0:0,-75.8596,-811.597	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:306:306,0:306:10952:0:0:0,-92.1152,-985.575	0/0:134:132,2:132:4712:2:72:0,-33.5013,-417.402	0/0:157:156,1:156:5559:1:36:0,-43.6634,-496.834	0/1:20:6,14:6:212:14:504:-39.6775,0,-13.4042	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/0:333:333,0:333:11931:0:0:0,-100.243,-1073.64	0/0:254:254,0:254:9080:0:0:0,-76.4616,-817.175	0/1:107:61,46:61:2184:46:1639:-115.588,0,-164.616	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:210:121,89:121:4335:89:3187:-223.832,0,-327.108	0/1:49:21,28:21:756:28:999:-75.474,0,-53.6168	0/0:149:149,0:149:5313:0:0:0,-44.8535,-478.305	0/0:133:133,0:133:4768:0:0:0,-40.037,-429.277	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:144:144,0:144:5143:0:0:0,-43.3483,-463.012	0/0:184:184,0:184:6604:0:0:0,-55.3895,-594.434	0/0:286:286,0:286:10208:0:0:0,-86.0946,-918.651	0/0:150:150,0:150:5363:0:0:0,-45.1545,-482.8	0/1:232:133,99:133:4753:99:3540:-248.97,0,-358.088	0/0:151:151,0:151:5396:0:0:0,-45.4555,-485.769	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:132:70,62:70:2491:62:2215:-159.878,0,-184.707	0/1:73:66,7:66:2368:7:252:-1.05377,0,-191.403	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.775	0/1:173:85,88:85:3035:88:3168:-233.26,0,-221.302	0/1:61:34,27:34:1216:27:963:-68.6231,0,-91.3837	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:89:89,0:89:3161:0:0:0,-26.7917,-284.084	0/0:175:174,1:174:6205:1:36:0,-49.082,-554.95	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:295:294,1:294:10500:1:36:0,-85.2056,-941.319	0/0:162:159,3:159:5704:3:108:0,-38.6917,-503.401	0/0:84:82,2:82:2917:2:72:0,-18.4498,-255.926	0/0:158:158,0:158:5663:0:0:0,-47.5627,-509.788	0/0:205:205,0:205:7316:0:0:0,-61.7111,-658.426	0/1:126:19,107:19:684:107:3823:-306.337,0,-23.9605	0/0:32:30,2:30:1072:2:72:0,-2.79624,-89.9557	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:100:44,55:44:1557:55:1972:-147.73,0,-110.395	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:110:108,2:108:3852:2:72:0,-26.2766,-340.038	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.501	0/0:141:141,0:141:5059:0:0:0,-42.4452,-455.453	0/0:161:160,1:160:5748:1:36:0,-44.8676,-513.835	0/1:181:93,88:93:3319:88:3159:-229.843,0,-244.442	0/1:132:72,60:72:2588:60:2143:-153.393,0,-193.432	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/0:108:107,0:107:3821:0:0:0,-32.2102,-343.726	0/0:217:217,0:217:7720:0:0:0,-65.3235,-694.832	0/0:161:160,1:160:5721:1:36:0,-44.8676,-511.408	0/1:72:39,33:39:1396:33:1173:-84.2014,0,-104.265	0/1:113:62,51:62:2215:51:1832:-131.144,0,-165.598	0/1:181:87,93:87:3115:93:3306:-243.212,0,-226.031	0/0:55:55,0:55:1948:0:0:0,-16.5566,-175.593	0/0:117:117,0:117:4165:0:0:0,-35.2205,-375.033	0/0:99:99,0:99:3541:0:0:0,-29.802,-318.897	0/1:66:31,35:31:1116:35:1256:-93.4773,0,-80.8837	0/1:149:67,82:67:2399:82:2921:-218.27,0,-171.313	0/1:100:34,66:34:1224:66:2376:-183.994,0,-80.364	0/0:152:151,1:151:5410:1:36:0,-42.1583,-483.43	0/0:129:129,0:129:4592:0:0:0,-38.8329,-413.445
chr03	20479020	.	G	T	57903.6	PASS	AB=0.515904;ABP=13.7162;AC=24;AF=0.12766;AN=188;AO=2546;CIGAR=1X;DP=19231;DPB=19231;DPRA=1.42815;EPP=5531.58;EPPR=36197.1;GTI=0;LEN=1;MEANALT=1.16279;MQM=59.9756;MQMR=59.9942;NS=94;NUMALT=1;ODDS=5.06559;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90618;QR=587077;RO=16676;RPL=1274;RPP=3.01371;RPPR=143.31;RPR=1272;RUN=1;SAF=1274;SAP=3.01371;SAR=1272;SRF=8857;SRP=143.31;SRR=7819;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:48,30:48:1720:30:1072:-73.3121,0,-131.605	0/1:205:109,96:109:3866:96:3418:-246.123,0,-286.426	0/1:235:125,110:125:4430:110:3915:-281.803,0,-328.13	0/0:521:520,1:520:18354:1:36:0,-153.238,-1647.87	0/0:49:48,1:48:1699:1:36:0,-11.1522,-149.597	0/0:52:52,0:52:1826:0:0:0,-15.6536,-164.62	0/0:217:217,0:217:7630:0:0:0,-65.3235,-686.745	0/0:355:354,1:354:12512:1:36:0,-103.267,-1122.33	0/0:294:294,0:294:10372:0:0:0,-88.5028,-933.417	0/0:244:243,1:243:8528:1:36:0,-69.853,-763.935	0/0:98:98,0:98:3459:0:0:0,-29.5009,-311.521	0/0:216:216,0:216:7601:0:0:0,-65.0225,-684.143	0/1:163:88,75:88:3102:75:2680:-192.378,0,-230.342	0/0:129:129,0:129:4503:0:0:0,-38.8329,-405.442	0/0:137:137,0:137:4836:0:0:0,-41.2411,-435.397	0/0:122:122,0:122:4272:0:0:0,-36.7257,-384.66	0/0:95:94,1:94:3313:1:22:0,-26.3979,-296.191	0/0:94:94,0:94:3317:0:0:0,-28.2968,-298.75	0/1:78:39,39:39:1365:39:1404:-103.179,0,-99.6661	0/0:543:542,1:542:19063:1:36:0,-159.861,-1711.66	0/0:443:441,1:441:15441:1:36:0,-129.817,-1385.83	0/0:168:168,0:168:5916:0:0:0,-50.573,-532.554	0/0:203:203,0:203:7120:0:0:0,-61.1091,-640.866	0/0:148:148,0:148:5261:0:0:0,-44.5524,-473.629	0/0:122:122,0:122:4315:0:0:0,-36.7257,-388.529	0/1:719:340,378:340:11907:378:13436:-992.54,0,-855.01	0/0:531:530,1:530:18776:1:36:0,-156.249,-1685.82	0/0:87:87,0:87:3010:0:0:0,-26.1896,-271.13	0/0:550:549,0:549:19452:0:0:0,-165.265,-1749.87	0/0:198:196,2:196:6912:2:72:0,-52.7672,-615.317	0/0:245:245,0:245:8599:0:0:0,-73.7523,-773.923	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:4:4,0:4:120:0:0:0,-1.20412,-11.0966	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:492:492,0:492:17216:0:0:0,-148.107,-1549.09	0/0:256:255,1:255:8940:1:36:0,-73.4654,-800.998	0/1:88:48,40:48:1676:40:1432:-102.687,0,-124.631	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/1:309:176,133:176:6200:133:4734:-333.197,0,-465.084	0/1:80:41,39:41:1443:39:1396:-101.857,0,-106.083	0/0:229:228,0:228:7968:0:0:0,-68.6348,-716.798	0/0:182:182,0:182:6302:0:0:0,-54.7875,-567.284	0/0:149:149,0:149:5203:0:0:0,-44.8535,-468.416	0/0:238:238,0:238:8427:0:0:0,-71.6451,-758.441	0/0:224:224,0:224:7939:0:0:0,-67.4307,-714.521	0/0:278:276,2:276:9727:2:68:0,-77.2886,-868.993	0/0:233:233,0:233:8170:0:0:0,-70.14,-735.329	0/1:340:160,179:160:5639:179:6394:-473.14,0,-405.224	0/0:327:327,0:327:11534:0:0:0,-98.4368,-1037.94	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:214:103,111:103:3643:111:3956:-291.813,0,-263.658	0/0:116:116,0:116:4116:0:0:0,-34.9195,-370.626	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:332:155,177:155:5515:177:6280:-465.354,0,-396.535	0/1:112:52,60:52:1819:60:2129:-158.161,0,-130.272	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:194:194,0:194:6802:0:0:0,-58.3998,-612.214	0/0:191:190,1:190:6656:1:36:0,-53.8985,-595.529	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:432:432,0:432:15313:0:0:0,-130.045,-1377.9	0/0:367:365,2:365:12874:2:72:0,-103.641,-1151.66	0/0:193:189,4:189:6642:4:144:0,-44.7852,-584.549	0/0:147:147,0:147:5173:0:0:0,-44.2514,-465.714	0/0:504:496,8:496:17549:8:273:0,-126.83,-1554.15	0/1:371:111,260:111:3954:260:9259:-721.597,0,-244.325	0/0:57:57,0:57:2000:0:0:0,-17.1587,-180.272	0/0:188:187,1:187:6629:1:32:0,-53.3943,-593.497	0/1:140:64,75:64:2210:75:2653:-196.813,0,-156.958	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:214:214,0:214:7570:0:0:0,-64.4204,-681.346	0/0:132:132,0:132:4642:0:0:0,-39.736,-417.942	0/0:387:387,0:387:13605:0:0:0,-116.499,-1224.26	0/0:346:344,1:344:12165:1:36:0,-100.592,-1091.14	0/1:84:51,33:51:1795:33:1184:-81.5818,0,-136.545	0/1:251:118,133:118:4160:133:4776:-354.437,0,-299.025	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/0:277:277,0:277:9822:0:0:0,-83.3853,-883.932	0/0:269:269,0:269:9453:0:0:0,-80.9771,-850.75	0/0:628:628,0:628:22107:0:0:0,-189.047,-1989.09	0/0:162:161,1:161:5606:1:27:0,-46.0671,-501.97	0/1:155:80,75:80:2797:75:2662:-193.166,0,-205.31	0/1:189:107,81:107:3714:81:2897:-204.011,0,-277.507	0/1:351:172,179:172:6007:179:6365:-467.279,0,-435.085	0/0:71:71,0:71:2466:0:0:0,-21.3731,-222.191	0/0:169:168,1:168:5949:1:21:0,-48.7746,-533.425	0/0:151:151,0:151:5282:0:0:0,-45.4555,-475.524	0/1:62:29,33:29:1024:33:1184:-88.2045,0,-73.8087	0/1:129:70,58:70:2403:58:2059:-146.689,0,-177.631	0/1:182:65,117:65:2286:117:4134:-317.461,0,-151.214	0/0:242:242,0:242:8479:0:0:0,-72.8493,-763.122	0/0:249:249,0:249:8705:0:0:0,-74.9565,-783.44
chr03	20487550	.	TA	TG	232497	PASS	AB=0.531309;ABP=25.7175;AC=164;AF=0.87234;AN=188;AO=8378;CIGAR=1M1X;DP=9659;DPB=9659;DPRA=0;EPP=18195.6;EPPR=2732.55;GTI=1;LEN=1;MEANALT=1.2234;MQM=55.6023;MQMR=59.8663;NS=94;NUMALT=1;ODDS=4.20009;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=297258;QR=44107;RO=1257;RPL=4463;RPP=80.8453;RPPR=52.3495;RPR=3915;RUN=1;SAF=4463;SAP=80.8453;SAR=3915;SRF=713;SRP=52.3495;SRR=544;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:13,21:13:462:21:752:-57.1916,0,-31.3471	0/1:120:54,65:54:1887:65:2315:-172.061,0,-133.993	0/1:170:67,103:67:2339:103:3680:-278.407,0,-159.591	1/1:203:0,203:0:0:203:7203:-646.668,-61.1091,0	1/1:27:0,27:0:0:27:960:-86.5506,-8.12781,0	1/1:49:0,49:0:0:49:1756:-158.038,-14.7505,0	1/1:101:0,101:0:0:101:3602:-323.948,-30.404,0	1/1:176:0,175:0:0:175:6198:-555.885,-52.6803,0	1/1:124:0,123:0:0:123:4371:-391.446,-37.0267,0	1/1:127:0,127:0:0:127:4509:-405.443,-38.2308,0	1/1:107:0,107:0:0:107:3823:-342.422,-32.2102,0	1/1:187:1,186:1:25:186:6486:-576.084,-53.7927,0	0/1:128:57,71:57:2035:71:2540:-188.986,0,-144.873	1/1:151:1,150:1:36:150:5309:-472.59,-41.8573,0	1/1:139:0,139:0:0:139:4920:-441.234,-41.8432,0	1/1:93:0,93:0:0:93:3300:-296.578,-27.9958,0	1/1:124:0,123:0:0:123:4395:-394.565,-37.0267,0	1/1:90:0,90:0:0:90:3176:-285.086,-27.0927,0	0/1:71:26,45:26:919:45:1600:-122.557,0,-61.6543	1/1:121:0,120:0:0:120:4250:-381.238,-36.1236,0	1/1:197:1,196:1:36:196:6963:-621.993,-55.7046,0	1/1:36:0,36:0:0:36:1262:-113.841,-10.8371,0	1/1:68:0,68:0:0:68:2413:-216.397,-20.47,0	1/1:47:0,46:0:0:46:1648:-148.099,-13.8474,0	1/1:50:0,50:0:0:50:1760:-157.539,-15.0515,0	0/1:224:87,135:87:3033:135:4782:-362.771,0,-206.065	1/1:230:0,230:0:0:230:8183:-731.551,-69.2369,0	1/1:67:0,67:0:0:67:2358:-211.786,-20.169,0	1/1:221:2,219:2:72:219:7804:-694.473,-59.6909,0	1/1:101:4,96:4:133:96:3390:-290.874,-18.1429,0	1/1:106:0,106:0:0:106:3777:-338.587,-31.9092,0	0/1:4:3,1:3:95:1:36:-2.39415,0,-7.65979	1/1:5:0,5:0:0:5:180:-16.5304,-1.50515,0	1/1:4:0,3:0:0:3:99:-8.88317,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.4883,-1.50515,0	1/1:6:0,6:0:0:6:212:-19.178,-1.80618,0	1/1:308:0,308:0:0:308:10929:-982.282,-92.7172,0	1/1:71:0,71:0:0:71:2535:-227.866,-21.3731,0	0/1:98:39,59:39:1367:59:2092:-158.223,0,-93.8094	1/1:1:0,1:0:0:1:36:-3.58648,-0.30103,0	0/1:128:53,74:53:1855:74:2630:-197.669,0,-128.636	0/1:53:24,29:24:836:29:1036:-77.2421,0,-59.6009	1/1:101:0,101:0:0:101:3623:-325.531,-30.404,0	1/1:101:0,101:0:0:101:3561:-320.204,-30.404,0	1/1:129:0,129:0:0:129:4571:-410.794,-38.8329,0	1/1:81:0,81:0:0:81:2830:-253.057,-24.3834,0	1/1:89:0,89:0:0:89:3126:-279.268,-26.7917,0	1/1:209:0,208:0:0:208:7385:-663.306,-62.6142,0	1/1:80:0,80:0:0:80:2868:-257.833,-24.0824,0	0/1:125:56,69:56:1969:69:2480:-185.402,0,-139.854	1/1:64:0,64:0:0:64:2265:-203.99,-19.2659,0	1/1:11:0,11:0:0:11:388:-35.1894,-3.31133,0	0/1:76:31,45:31:1091:45:1603:-120.656,0,-75.6206	1/1:35:0,35:0:0:35:1256:-113.076,-10.5361,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:124:63,61:63:2227:61:2145:-155.651,0,-163.344	0/1:30:8,21:8:286:21:756:-59.3217,0,-17.0949	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	1/1:4:0,4:0:0:4:140:-12.9411,-1.20412,0	1/1:89:0,89:0:0:89:3169:-284.696,-26.7917,0	1/1:189:2,185:2:72:185:6568:-583.342,-49.7551,0	1/1:5:0,5:0:0:5:176:-16.1787,-1.50515,0	1/1:120:0,120:0:0:120:4274:-383.811,-36.1236,0	1/1:129:1,128:1:34:128:4556:-405.928,-35.434,0	1/1:81:1,80:1:34:80:2838:-251.973,-20.9845,0	1/1:71:0,71:0:0:71:2518:-225.203,-21.3731,0	1/1:121:0,121:0:0:121:4308:-386.825,-36.4246,0	0/1:119:76,43:76:2676:43:1535:-101.879,0,-205.261	1/1:76:1,75:1:36:75:2679:-237.317,-19.28,0	1/1:66:0,65:0:0:65:2336:-209.488,-19.567,0	0/1:116:56,60:56:1947:60:2143:-157.936,0,-140.584	1/1:19:0,19:0:0:19:671:-60.6699,-5.71957,0	1/1:88:0,88:0:0:88:3106:-277.66,-26.4906,0	1/1:79:0,79:0:0:79:2788:-250.174,-23.7814,0	1/1:245:0,243:0:0:243:8527:-766.069,-73.1503,0	1/1:152:0,151:0:0:151:5334:-479.245,-45.4555,0	0/1:104:47,57:47:1638:57:2048:-151.986,0,-116.398	0/1:139:71,68:71:2457:68:2413:-174.802,0,-179.449	1/1:11:0,11:0:0:11:392:-35.5597,-3.31133,0	1/1:146:0,146:0:0:146:5201:-466.906,-43.9504,0	1/1:119:0,119:0:0:119:4235:-379.12,-35.8226,0	1/1:176:0,176:0:0:176:6248:-561.015,-52.9813,0	1/1:149:1,148:1:36:148:5239:-466.122,-41.2552,0	0/1:136:61,75:61:2155:75:2647:-197.386,0,-153.161	0/1:120:55,65:55:1917:65:2317:-172.508,0,-136.683	0/1:233:111,122:111:3917:122:4310:-316.722,0,-282.581	1/1:35:0,35:0:0:35:1256:-112.576,-10.5361,0	1/1:110:0,110:0:0:110:3900:-350.123,-33.1133,0	1/1:117:0,117:0:0:117:4151:-371.824,-35.2205,0	0/1:63:27,36:27:944:36:1283:-96.4884,0,-66.3086	0/1:133:72,60:72:2544:60:2084:-147.668,0,-189.227	0/1:116:84,32:84:2961:32:1144:-68.0116,0,-231.806	1/1:109:1,107:1:36:107:3786:-335.665,-29.1975,0	1/1:240:0,240:0:0:240:8487:-762.289,-72.2472,0
chr03	20498133	.	G	A	41970.3	PASS	AB=0.529429;ABP=28.8275;AC=24;AF=0.129032;AN=186;AO=1830;CIGAR=1X;DP=12378;DPB=12378;DPRA=1.16978;EPP=3976.8;EPPR=22890.3;GTI=2;LEN=1;MEANALT=1.06452;MQM=59.771;MQMR=59.9518;NS=93;NUMALT=1;ODDS=1.77754;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65182;QR=374978;RO=10544;RPL=960;RPP=12.6217;RPPR=53.6758;RPR=870;RUN=1;SAF=960;SAP=12.6217;SAR=870;SRF=5519;SRP=53.268;SRR=5025;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:46,32:46:1640:32:1143:-79.6657,0,-124.408	0/1:187:74,113:74:2644:113:4032:-306.716,0,-181.914	0/1:174:84,90:84:2968:90:3183:-234.225,0,-214.971	0/0:216:214,1:214:7579:1:36:0,-61.483,-678.551	0/0:54:54,0:54:1897:0:0:0,-16.2556,-171.004	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.431	0/0:144:144,0:144:5117:0:0:0,-43.3483,-460.672	0/0:215:215,0:215:7635:0:0:0,-64.7214,-687.173	0/0:124:123,1:123:4390:1:36:0,-33.7294,-391.675	0/0:169:167,2:167:5971:2:68:0,-44.4164,-531.039	0/0:100:100,0:100:3570:0:0:0,-30.103,-321.497	0/0:179:179,0:179:6319:0:0:0,-53.8844,-568.802	0/1:175:88,87:88:3143:87:3086:-225.272,0,-230.415	0/0:116:116,0:116:4127:0:0:0,-34.9195,-370.84	0/0:155:155,0:155:5528:0:0:0,-46.6596,-497.645	0/0:121:121,0:121:4271:0:0:0,-36.4246,-384.571	0/0:89:89,0:89:3141:0:0:0,-26.7917,-282.917	0/0:121:121,0:121:4261:0:0:0,-36.4246,-383.674	0/1:71:30,41:30:1072:41:1459:-110.216,0,-75.4193	0/0:204:204,0:204:7287:0:0:0,-61.4101,-655.874	0/0:231:231,0:231:8161:0:0:0,-69.5379,-734.508	0/0:73:73,0:73:2589:0:0:0,-21.9752,-233.258	0/0:114:114,0:114:4075:0:0:0,-34.3174,-366.936	0/0:147:147,0:147:5248:0:0:0,-44.2514,-472.456	0/0:68:68,0:68:2405:0:0:0,-20.47,-216.706	0/1:276:111,165:111:3950:165:5893:-447.393,0,-272.603	0/0:294:294,0:294:10462:0:0:0,-88.5028,-941.494	0/0:116:116,0:116:4103:0:0:0,-34.9195,-369.452	0/0:273:273,0:273:9744:0:0:0,-82.1812,-876.9	0/0:107:107,0:107:3806:0:0:0,-32.2102,-342.734	0/0:119:119,0:119:4238:0:0:0,-35.8226,-381.6	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:393:393,0:393:14000:0:0:0,-118.305,-1259.77	0/0:168:167,1:167:5951:1:32:0,-47.3737,-532.496	0/1:83:40,43:40:1400:43:1532:-113.162,0,-101.309	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:167:93,74:93:3317:74:2631:-186.765,0,-248.206	0/1:56:33,23:33:1175:23:828:-57.9757,0,-89.1993	0/0:167:167,0:167:5915:0:0:0,-50.272,-532.459	0/0:205:205,0:205:7269:0:0:0,-61.7111,-654.249	0/0:135:135,0:135:4787:0:0:0,-40.639,-430.988	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:125:125,0:125:4471:0:0:0,-37.6287,-402.559	0/0:156:156,0:156:5538:0:0:0,-46.9607,-498.547	0/0:93:93,0:93:3295:0:0:0,-27.9958,-296.691	0/1:144:79,65:79:2832:65:2308:-164.63,0,-211.77	0/0:119:119,0:119:4253:0:0:0,-35.8226,-381.586	.:.:.:.:.:.:.:.	0/1:132:77,55:77:2742:55:1964:-137.254,0,-207.241	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:169:102,67:102:3617:67:2379:-163.475,0,-274.86	0/1:63:25,38:25:884:38:1349:-102.713,0,-60.9135	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/0:95:95,0:95:3364:0:0:0,-28.5978,-302.972	0/0:143:143,0:143:5068:0:0:0,-43.0473,-456.265	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69945	0/0:238:237,0:237:8449:0:0:0,-71.3441,-760.03	0/0:212:211,1:211:7479:1:36:0,-60.2201,-669.559	0/0:105:100,5:100:3563:5:176:0,-15.4231,-304.694	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.486	0/0:221:221,0:221:7867:0:0:0,-66.5276,-708.058	0/1:193:62,131:62:2209:131:4667:-362.091,0,-140.974	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.371	0/0:142:140,2:140:4998:2:72:0,-35.9095,-442.941	0/1:122:58,64:58:2059:64:2274:-168.187,0,-148.855	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2452	0/0:113:113,0:113:4026:0:0:0,-34.0164,-362.204	0/0:174:174,0:174:6222:0:0:0,-52.3792,-560.072	0/0:192:192,0:192:6847:0:0:0,-57.7978,-616.298	0/0:214:213,0:213:7591:0:0:0,-64.1194,-682.867	0/1:113:52,60:52:1859:60:2118:-156.811,0,-133.503	0/1:189:96,93:96:3420:93:3278:-238.328,0,-251.11	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:153:153,0:153:5445:0:0:0,-46.0576,-490.181	0/0:131:131,0:131:4616:0:0:0,-39.4349,-415.604	0/0:245:245,0:245:8709:0:0:0,-73.7523,-783.802	0/0:166:166,0:166:5930:0:0:0,-49.971,-533.809	0/1:159:78,81:78:2771:81:2903:-213.639,0,-201.768	0/1:186:90,96:90:3187:96:3448:-254.519,0,-231.062	0/1:288:146,142:146:5204:142:5044:-367.322,0,-381.802	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/0:158:158,0:158:5601:0:0:0,-47.5627,-504.204	0/0:164:164,0:164:5825:0:0:0,-49.3689,-524.294	0/1:80:30,50:30:1067:50:1788:-137.111,0,-72.2588	0/1:137:61,76:61:2171:76:2728:-204.503,0,-154.415	0/1:186:58,128:58:2042:128:4583:-356.62,0,-128.057	0/0:222:222,0:222:7923:0:0:0,-66.8287,-713.083	0/0:250:250,0:250:8883:0:0:0,-75.2575,-799.263
chr03	20499381	.	G	A	225359	PASS	AB=0.490789;ABP=5.25035;AC=164;AF=0.87234;AN=188;AO=10206;CIGAR=1X;DP=11772;DPB=11772;DPRA=0;EPP=22165.1;EPPR=3394.86;GTI=0;LEN=1;MEANALT=1;MQM=59.8906;MQMR=59.9457;NS=94;NUMALT=1;ODDS=4.2345;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=363635;QR=55465;RO=1566;RPL=2;RPP=22147.7;RPPR=3394.86;RPR=10204;RUN=1;SAF=2;SAP=22147.7;SAR=10204;SRF=0;SRP=3403.54;SRR=1566;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:100:55,45:55:1962:45:1608:-114.904,0,-146.75	0/1:88:46,42:46:1626:42:1499:-108.712,0,-120.137	0/1:231:94,137:94:3323:137:4874:-369.257,0,-229.749	1/1:189:0,189:0:0:189:6724:-604.655,-56.8947,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:59:0,59:0:0:59:2115:-190.613,-17.7608,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:225:0,225:0:0:225:8013:-721.173,-67.7318,0	1/1:139:0,139:0:0:139:4939:-444.657,-41.8432,0	1/1:130:0,130:0:0:130:4672:-420.594,-39.1339,0	1/1:84:0,84:0:0:84:2977:-268.163,-25.2865,0	1/1:143:0,143:0:0:143:5085:-457.789,-43.0473,0	0/1:133:59,74:59:2083:74:2632:-197.09,0,-147.7	1/1:86:0,86:0:0:86:3022:-272.208,-25.8886,0	1/1:105:0,105:0:0:105:3747:-337.431,-31.6082,0	1/1:75:3,72:3:104:72:2539:-220.11,-13.9304,0	1/1:38:1,37:1:36:37:1300:-113.702,-7.84087,0	1/1:38:0,38:0:0:38:1343:-121.167,-11.4391,0	0/1:49:27,22:27:964:22:776:-55.4108,0,-72.3264	1/1:260:0,260:0:0:260:9301:-837.011,-78.2678,0	1/1:229:0,229:0:0:229:8156:-733.494,-68.9359,0	1/1:105:1,104:1:36:104:3678:-327.523,-28.0099,0	1/1:168:0,168:0:0:168:6010:-540.913,-50.573,0	1/1:107:0,107:0:0:107:3848:-346.02,-32.2102,0	1/1:118:0,118:0:0:118:4201:-378.239,-35.5215,0	0/1:327:164,163:164:5851:163:5832:-426.512,0,-428.266	1/1:325:0,325:0:0:325:11570:-1041.17,-97.8348,0	1/1:61:0,61:0:0:61:2178:-196.285,-18.3628,0	1/1:311:1,310:1:36:310:11076:-993.114,-90.0221,0	1/1:136:2,134:2:72:134:4773:-422.891,-34.1034,0	1/1:101:0,101:0:0:101:3577:-322.139,-30.404,0	0/1:16:11,5:11:373:5:171:-10.909,0,-29.0788	1/1:57:0,57:0:0:57:2035:-183.422,-17.1587,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:15:0,15:0:0:15:531:-48.1192,-4.51545,0	1/1:33:0,33:0:0:33:1167:-105.335,-9.93399,0	1/1:265:0,265:0:0:265:9437:-849.236,-79.773,0	1/1:155:0,155:0:0:155:5520:-496.925,-46.6597,0	0/1:73:21,52:21:748:52:1846:-144.317,0,-45.6701	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:75:50,25:50:1774:25:881:-57.0271,0,-137.364	0/1:65:36,29:36:1253:29:1023:-72.8148,0,-93.5029	1/1:244:0,244:0:0:244:8727:-785.419,-73.4513,0	1/1:77:0,77:0:0:77:2739:-246.74,-23.1793,0	1/1:73:0,73:0:0:73:2579:-232.358,-21.9752,0	1/1:169:0,169:0:0:169:6013:-541.256,-50.8741,0	1/1:272:0,272:0:0:272:9720:-874.047,-81.8802,0	1/1:274:0,274:0:0:274:9748:-877.272,-82.4822,0	1/1:206:0,206:0:0:206:7362:-662.628,-62.0122,0	0/1:148:80,68:80:2836:68:2408:-172.423,0,-210.921	1/1:95:1,94:1:36:94:3359:-298.901,-24.9996,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:210:101,109:101:3552:109:3916:-289.41,0,-256.67	1/1:105:0,105:0:0:105:3764:-338.84,-31.6082,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:202:86,116:86:3038:116:4121:-310.263,0,-212.796	0/1:19:4,15:4:140:15:536:-42.8552,0,-7.22501	1/1:12:0,12:0:0:12:410:-37.2265,-3.61236,0	1/1:17:0,17:0:0:17:608:-55.0507,-5.11751,0	1/1:106:0,106:0:0:106:3748:-337.522,-31.9092,0	1/1:120:0,120:0:0:120:4286:-385.917,-36.1236,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:185:1,184:1:36:184:6560:-586.855,-52.0923,0	1/1:207:1,206:1:36:206:7366:-659.389,-58.7149,0	1/1:110:2,108:2:72:108:3867:-341.388,-26.2766,0	1/1:138:0,138:0:0:138:4912:-442.155,-41.5421,0	1/1:212:0,212:0:0:212:7539:-678.536,-63.8184,0	0/1:225:150,75:150:5324:75:2673:-173.082,0,-411.544	1/1:82:0,82:0:0:82:2931:-264.024,-24.6845,0	1/1:70:1,69:1:36:69:2448:-216.964,-17.4738,0	0/1:55:33,22:33:1148:22:783:-54.2329,0,-87.0662	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:161:0,161:0:0:161:5744:-517.071,-48.4658,0	1/1:196:1,195:1:36:195:6942:-621.245,-55.4036,0	1/1:197:2,195:2:72:195:6931:-617.02,-52.4662,0	1/1:287:0,287:0:0:287:10259:-923.234,-86.3956,0	0/1:124:64,60:64:2279:60:2156:-156.978,0,-168.044	0/1:190:94,96:94:3354:96:3431:-251.794,0,-244.881	1/1:29:0,29:0:0:29:1029:-92.9193,-8.72987,0	1/1:187:1,186:1:36:186:6618:-592.102,-52.6943,0	1/1:157:0,157:0:0:157:5574:-501.728,-47.2617,0	1/1:238:0,238:0:0:238:8494:-764.415,-71.6451,0	1/1:67:0,67:0:0:67:2390:-215.356,-20.169,0	0/1:100:47,53:47:1659:53:1904:-141.535,0,-119.494	0/1:59:40,19:40:1418:19:667:-42.5939,0,-110.155	0/1:176:97,79:97:3450:79:2802:-199.439,0,-257.729	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	1/1:101:0,101:0:0:101:3601:-324.295,-30.404,0	1/1:99:0,99:0:0:99:3505:-315.662,-29.802,0	0/1:71:40,31:40:1401:31:1097:-77.6649,0,-105.012	0/1:184:73,111:73:2585:111:3939:-299.313,0,-177.509	0/1:120:76,44:76:2680:44:1551:-103.756,0,-205.321	1/1:118:0,118:0:0:118:4210:-379.077,-35.5215,0	1/1:147:0,147:0:0:147:5217:-469.669,-44.2514,0
chr03	20538585	.	A	G	151120	PASS	AB=0.459535;ABP=33.5887;AC=165;AF=0.87766;AN=188;AO=6845;CIGAR=1X;DP=8026;DPB=8026;DPRA=0;EPP=14866.7;EPPR=2561;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9157;MQMR=59.9983;NS=94;NUMALT=1;ODDS=0.128297;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244529;QR=42008;RO=1178;RPL=0;RPP=14866.7;RPPR=2561;RPR=6845;RUN=1;SAF=6845;SAP=14866.7;SAR=0;SRF=1178;SRP=2561;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:36,12:36:1284:12:419:-23.5915,0,-101.414	0/1:59:34,25:34:1209:25:896:-63.1996,0,-91.3525	0/1:92:55,37:55:1968:37:1315:-90.9563,0,-149.7	1/1:175:0,175:0:0:175:6253:-562.865,-52.6803,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:13:0,13:0:0:13:464:-42.0913,-3.91339,0	1/1:87:0,87:0:0:87:3115:-280.576,-26.1896,0	1/1:77:0,77:0:0:77:2764:-248.939,-23.1793,0	1/1:99:0,99:0:0:99:3548:-319.525,-29.802,0	1/1:50:0,50:0:0:50:1785:-160.929,-15.0515,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:138:0,138:0:0:138:4895:-440.695,-41.5421,0	0/1:92:39,53:39:1396:53:1892:-142.862,0,-98.2443	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	1/1:109:0,109:0:0:109:3899:-351.1,-32.8123,0	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	1/1:44:0,44:0:0:44:1560:-140.676,-13.2453,0	1/1:33:0,33:0:0:33:1180:-106.507,-9.93399,0	0/1:55:30,25:30:1061:25:892:-64.0421,0,-79.2427	1/1:282:0,282:0:0:282:10111:-909.919,-84.8905,0	1/1:140:0,140:0:0:140:4995:-449.693,-42.1442,0	1/1:106:0,106:0:0:106:3776:-340.041,-31.9092,0	1/1:110:0,110:0:0:110:3940:-354.792,-33.1133,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:78:0,78:0:0:78:2780:-250.418,-23.4803,0	0/1:150:65,85:65:2324:85:3044:-229.012,0,-164.266	1/1:235:0,235:0:0:235:8397:-755.735,-70.7421,0	1/1:45:0,45:0:0:45:1612:-145.368,-13.5464,0	1/1:268:1,266:1:36:266:9507:-851.981,-77.1366,0	1/1:118:3,115:3:108:115:4119:-360.818,-25.4464,0	1/1:119:0,118:0:0:118:4216:-379.262,-35.5215,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:4:0,4:0:0:4:144:-13.3127,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:22:0,22:0:0:22:769:-69.5273,-6.62266,0	1/1:262:0,262:0:0:262:9347:-840.891,-78.8699,0	1/1:64:0,64:0:0:64:2288:-206.182,-19.2659,0	0/1:99:50,49:50:1773:49:1764:-129.24,0,-130.049	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:127:65,62:65:2328:62:2220:-161.834,0,-171.549	0/1:40:21,19:21:752:19:680:-49.488,0,-55.9651	1/1:101:0,101:0:0:101:3609:-325.016,-30.404,0	1/1:64:0,63:0:0:63:2252:-202.583,-18.9649,0	1/1:68:0,68:0:0:68:2424:-218.365,-20.47,0	1/1:138:0,138:0:0:138:4938:-444.464,-41.5421,0	1/1:73:0,73:0:0:73:2619:-235.932,-21.9752,0	1/1:82:2,80:2:68:80:2870:-252.079,-18.2268,0	1/1:69:0,69:0:0:69:2465:-222.101,-20.7711,0	0/1:80:44,36:44:1576:36:1277:-91.1487,0,-118.049	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	0/1:128:62,66:62:2209:66:2363:-174.366,0,-160.541	1/1:85:0,85:0:0:85:3041:-273.566,-25.5876,0	1/1:13:0,13:0:0:13:455:-41.282,-3.91339,0	0/1:136:54,82:54:1944:82:2936:-223.534,0,-134.296	0/1:45:18,27:18:648:27:968:-73.891,0,-45.1055	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:115:1,114:1:36:114:4058:-361.808,-31.0202,0	1/1:123:1,122:1:36:122:4364:-389.336,-33.4284,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:96:1,95:1:32:95:3381:-301.306,-25.6996,0	1/1:56:5,51:5:180:51:1828:-148.249,-0.305615,0	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	1/1:134:0,134:0:0:134:4745:-427.212,-40.338,0	0/1:146:105,41:105:3696:41:1472:-88.8258,0,-288.89	1/1:63:0,63:0:0:63:2242:-202.041,-18.9649,0	1/1:45:0,45:0:0:45:1580:-142.469,-13.5464,0	0/1:69:36,33:36:1288:33:1171:-84.9256,0,-95.4525	1/1:35:0,35:0:0:35:1251:-112.859,-10.5361,0	1/1:137:0,137:0:0:137:4865:-438.003,-41.2411,0	1/1:70:0,70:0:0:70:2508:-225.971,-21.0721,0	1/1:145:0,145:0:0:145:5200:-468.075,-43.6494,0	1/1:136:0,136:0:0:136:4850:-436.656,-40.9401,0	0/1:30:13,17:13:464:17:608:-46.0211,0,-33.0666	0/1:57:24,33:24:815:33:1180:-89.3484,0,-56.4989	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:61:2,59:2:72:59:2085:-181.082,-11.5261,0	1/1:71:0,71:0:0:71:2532:-228.131,-21.3731,0	1/1:173:0,173:0:0:173:6183:-556.377,-52.0782,0	1/1:69:0,69:0:0:69:2480:-223.262,-20.7711,0	0/1:105:58,47:58:2084:47:1692:-120.93,0,-156.222	0/1:58:28,30:28:1008:30:1072:-79.3327,0,-73.5766	0/1:186:91,95:91:3268:95:3383:-248.694,0,-238.348	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:74:0,74:0:0:74:2623:-236.311,-22.2762,0	1/1:122:0,122:0:0:122:4366:-393.09,-36.7257,0	0/1:70:49,21:49:1744:21:752:-46.9342,0,-136.172	0/1:162:100,62:100:3561:62:2211:-150.487,0,-271.931	0/1:116:85,31:85:3040:31:1116:-65.8307,0,-238.911	1/1:65:0,65:0:0:65:2316:-208.701,-19.567,0	1/1:126:0,126:0:0:126:4512:-406.247,-37.9298,0
chr03	20538612	.	C	T	150811	PASS	AB=0.458993;ABP=34.354;AC=165;AF=0.87766;AN=188;AO=6869;CIGAR=1X;DP=8046;DPB=8046;DPRA=0;EPP=14918.9;EPPR=2556.66;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9109;MQMR=59.9983;NS=94;NUMALT=1;ODDS=0.35673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244320;QR=41569;RO=1176;RPL=6868;RPP=14910.2;RPPR=2556.66;RPR=1;RUN=1;SAF=6868;SAP=14910.2;SAR=1;SRF=1176;SRP=2556.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:35,12:35:1233:12:426:-24.5278,0,-97.1237	0/1:60:35,25:35:1247:25:900:-63.2592,0,-94.4714	0/1:91:54,36:54:1905:36:1273:-87.4186,0,-144.273	1/1:175:0,175:0:0:175:6233:-561.068,-52.6803,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:87:0,87:0:0:87:3107:-279.857,-26.1896,0	1/1:81:0,81:0:0:81:2899:-261.013,-24.3834,0	1/1:99:0,99:0:0:99:3508:-315.926,-29.802,0	1/1:52:0,52:0:0:52:1868:-168.38,-15.6536,0	1/1:79:0,79:0:0:79:2821:-254.128,-23.7814,0	1/1:142:0,142:0:0:142:5003:-450.416,-42.7463,0	0/1:93:41,52:41:1447:52:1841:-137.972,0,-102.529	1/1:57:0,57:0:0:57:2000:-180.271,-17.1587,0	1/1:104:0,104:0:0:104:3723:-335.267,-31.3071,0	1/1:79:0,79:0:0:79:2805:-252.689,-23.7814,0	1/1:42:0,42:0:0:42:1467:-132.319,-12.6433,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:54:29,25:29:1036:25:883:-63.5309,0,-77.2983	1/1:280:0,280:0:0:280:9993:-899.307,-84.2884,0	1/1:143:0,143:0:0:143:5080:-457.339,-43.0473,0	1/1:108:0,108:0:0:108:3811:-343.189,-32.5112,0	1/1:115:0,115:0:0:115:4086:-367.927,-34.6185,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:78:0,78:0:0:78:2780:-250.383,-23.4803,0	0/1:151:65,86:65:2302:86:3047:-228.983,0,-161.985	1/1:239:1,238:1:36:238:8445:-756.46,-68.3479,0	1/1:45:0,45:0:0:45:1604:-144.646,-13.5464,0	1/1:273:1,272:1:36:272:9720:-871.139,-78.5829,0	1/1:115:3,112:3:104:112:4005:-350.935,-24.9156,0	1/1:122:0,122:0:0:122:4344:-391.136,-36.7257,0	1/1:10:0,10:0:0:10:343:-31.2,-3.0103,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:4:0,4:0:0:4:129:-11.9276,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:22:0,22:0:0:22:775:-70.0702,-6.62266,0	1/1:257:0,257:0:0:257:9093:-818.331,-77.3647,0	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	0/1:98:49,49:49:1704:49:1734:-126.84,0,-124.142	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:124:63,61:63:2243:61:2184:-159.498,0,-164.805	0/1:41:23,18:23:801:18:635:-45.1347,0,-60.0645	1/1:105:0,105:0:0:105:3768:-339.318,-31.6082,0	1/1:64:0,64:0:0:64:2286:-206.001,-19.2659,0	1/1:69:0,69:0:0:69:2426:-218.562,-20.7711,0	1/1:135:0,135:0:0:135:4832:-434.929,-40.6391,0	1/1:74:0,74:0:0:74:2640:-237.833,-22.2762,0	1/1:82:0,82:0:0:82:2902:-261.411,-24.6845,0	1/1:69:0,69:0:0:69:2438:-219.674,-20.7711,0	0/1:78:44,34:44:1580:34:1220:-86.6265,0,-119.011	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:130:63,67:63:2212:67:2382:-175.494,0,-160.207	1/1:86:0,86:0:0:86:3052:-274.888,-25.8886,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:138:54,84:54:1923:84:2991:-227.811,0,-131.804	0/1:45:18,27:18:648:27:968:-73.891,0,-45.1055	1/1:14:0,14:0:0:14:492:-44.6123,-4.21442,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:114:0,114:0:0:114:4059:-365.497,-34.3174,0	1/1:123:0,123:0:0:123:4393:-395.542,-37.0267,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:82:1,81:1:36:81:2889:-256.647,-21.0862,0	1/1:97:1,96:1:36:96:3420:-304.414,-25.6016,0	1/1:58:5,53:5:176:53:1899:-155.002,-1.27472,0	1/1:55:0,55:0:0:55:1950:-175.775,-16.5567,0	1/1:132:0,132:0:0:132:4692:-422.442,-39.736,0	0/1:139:98,41:98:3474:41:1464:-90.2129,0,-271.027	1/1:63:0,63:0:0:63:2238:-201.681,-18.9649,0	1/1:41:0,41:0:0:41:1453:-131.064,-12.3422,0	0/1:70:38,32:38:1351:32:1134:-81.2951,0,-100.817	1/1:36:0,36:0:0:36:1260:-113.695,-10.8371,0	1/1:137:0,137:0:0:137:4860:-437.553,-41.2411,0	1/1:71:0,71:0:0:71:2526:-227.59,-21.3731,0	1/1:143:0,143:0:0:143:5096:-458.693,-43.0473,0	1/1:137:0,137:0:0:137:4885:-439.802,-41.2411,0	0/1:33:17,16:17:604:16:572:-41.8794,0,-44.7566	0/1:59:26,33:26:932:33:1184:-89.1057,0,-66.4381	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:59:2,57:2:72:57:2035:-176.585,-10.924,0	1/1:73:1,72:1:36:72:2544:-225.611,-18.3769,0	1/1:173:0,173:0:0:173:6129:-551.668,-52.0782,0	1/1:70:0,70:0:0:70:2511:-225.871,-21.0721,0	0/1:104:58,46:58:2015:46:1652:-117.633,0,-150.308	0/1:55:27,28:27:955:28:995:-73.3074,0,-69.7082	0/1:188:92,96:92:3256:96:3382:-248,0,-236.667	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:77:0,77:0:0:77:2710:-244.067,-23.1793,0	1/1:120:0,120:0:0:120:4253:-382.916,-36.1236,0	0/1:70:49,21:49:1743:21:756:-47.2951,0,-136.082	0/1:163:98,65:98:3437:65:2314:-159.224,0,-260.477	0/1:115:84,31:84:2953:31:1112:-65.7714,0,-231.384	1/1:68:1,67:1:36:67:2388:-211.533,-16.8718,0	1/1:124:0,124:0:0:124:4391:-395.368,-37.3277,0
chr03	20642212	.	AACG	AACA,GACA	124844	PASS	AB=0.46755,0.527815;ABP=16.8214,13.1573;AC=164,24;AF=0.87234,0.12766;AN=188;AO=4856,805;CIGAR=3M1X,1X2M1X;DP=5677;DPB=5677.25;DPRA=0,1.18374;EPP=10539,1751.05;EPPR=9.52472;GTI=0;LEN=1,4;MEANALT=1.44681,2.24138;MQM=59.9689,59.9665;MQMR=60;NS=94;NUMALT=2;ODDS=1.47685;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=173563,27464;QR=102;RO=3;RPL=4855,805;RPP=10539,1751.05;RPPR=9.52472;RPR=1,0;RUN=1,1;SAF=4856,805;SAP=10547.7,1751.05;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:13:0,3,10:0:0:3,10:108,345:-37.1875,-28.3718,-27.4687,-9.17208,0,-6.16178	1/2:97:0,55,41:0:0:55,41:1976,1403:-275.179,-113.97,-97.413,-161.306,0,-148.964	1/2:65:0,32,33:0:0:32,33:1144,1120:-184.439,-91.1511,-81.5181,-93.6366,0,-83.7026	1/1:103:0,103,0:0:0:103,0:3663,0:-329.872,-31.0061,0,-329.872,-31.0061,-329.872	1/1:44:0,44,0:0:0:44,0:1572,0:-141.772,-13.2453,0,-141.772,-13.2453,-141.772	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/1:66:0,66,0:0:0:66,0:2366,0:-213.198,-19.868,0,-213.198,-19.868,-213.198	1/1:51:0,51,0:0:0:51,0:1809,0:-163.078,-15.3525,0,-163.078,-15.3525,-163.078	1/1:49:0,49,0:0:0:49,0:1733,0:-156.062,-14.7505,0,-156.062,-14.7505,-156.062	1/1:58:0,58,0:0:0:58,0:2084,0:-187.83,-17.4597,0,-187.83,-17.4597,-187.83	1/1:38:0,37,0:0:0:37,0:1332,0:-119.832,-11.1381,0,-119.832,-11.1381,-119.832	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/2:36:0,18,18:0:0:18,18:644,616:-102.864,-50.342,-44.9234,-52.8721,0,-47.4535	1/1:37:0,37,0:0:0:37,0:1324,0:-119.462,-11.1381,0,-119.462,-11.1381,-119.462	1/1:58:0,58,0:0:0:58,0:2066,0:-186.21,-17.4597,0,-186.21,-17.4597,-186.21	1/1:31:0,31,0:0:0:31,0:1108,0:-100.031,-9.33193,0,-100.031,-9.33193,-100.031	1/1:47:0,47,0:0:0:47,0:1670,0:-150.586,-14.1484,0,-150.586,-14.1484,-150.586	1/1:25:0,25,0:0:0:25,0:891,0:-80.5088,-7.52575,0,-80.5088,-7.52575,-80.5088	1/2:30:0,16,14:0:0:16,14:576,495:-87.6718,-40.6697,-35.8532,-47.3585,0,-43.1441	1/1:162:1,161,0:1:36:161,0:5755,0:-514.463,-45.1686,0,-514.764,-48.4658,-517.702	1/1:60:0,60,0:0:0:60,0:2122,0:-191.246,-18.0618,0,-191.246,-18.0618,-191.246	1/1:102:0,102,0:0:0:102,0:3653,0:-328.973,-30.7051,0,-328.973,-30.7051,-328.973	1/1:72:0,72,0:0:0:72,0:2573,0:-231.818,-21.6742,0,-231.818,-21.6742,-231.818	1/1:73:0,72,0:0:0:72,0:2588,0:-232.886,-21.6742,0,-232.886,-21.6742,-232.886	1/1:49:0,49,0:0:0:49,0:1733,0:-156.253,-14.7505,0,-156.253,-14.7505,-156.253	1/2:198:0,88,108:0:0:88,108:3145,3672:-554.303,-297.868,-271.378,-256.469,0,-223.957	1/1:103:1,101,1:1:30:101,1:3599,36:-321.086,-28.0354,0,-318.449,-27.4367,-320.546	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:161:0,161,0:0:0:161,0:5762,0:-518.694,-48.4658,0,-518.694,-48.4658,-518.694	1/1:102:0,99,3:0:0:99,3:3547,101:-319.1,-29.802,0,-310.917,-21.2817,-310.014	1/1:108:0,108,0:0:0:108,0:3830,0:-344.896,-32.5112,0,-344.896,-32.5112,-344.896	1/2:9:0,4,5:0:0:4,5:144,178:-26.615,-14.8636,-13.6594,-12.1095,0,-10.6043	1/1:15:0,14,0:0:0:14,0:481,0:-43.0644,-4.21442,0,-43.0644,-4.21442,-43.0644	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:108:0,108,0:0:0:108,0:3870,0:-348.494,-32.5112,0,-348.494,-32.5112,-348.494	1/1:83:0,83,0:0:0:83,0:2969,0:-267.441,-24.9855,0,-267.441,-24.9855,-267.441	1/2:32:0,14,18:0:0:14,18:500,627:-92.1052,-51.3366,-47.1222,-41.1218,0,-35.7032	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:86:0,43,42:0:0:43,42:1529,1437:-241.227,-116.619,-103.675,-124.597,0,-111.954	1/2:40:0,14,25:0:0:14,25:504,879:-112.728,-71.6002,-67.3858,-41.1797,0,-33.654	1/1:81:0,81,0:0:0:81,0:2891,0:-260.425,-24.3834,0,-260.425,-24.3834,-260.425	1/1:35:0,35,0:0:0:35,0:1256,0:-113.345,-10.5361,0,-113.345,-10.5361,-113.345	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/1:73:0,72,0:0:0:72,0:2578,0:-231.909,-21.6742,0,-231.909,-21.6742,-231.909	1/1:67:0,67,0:0:0:67,0:2408,0:-216.976,-20.169,0,-216.976,-20.169,-216.976	1/1:79:1,78,0:1:36:78,0:2787,0:-247.47,-20.1831,0,-247.771,-23.4803,-250.709	1/1:71:0,71,0:0:0:71,0:2552,0:-229.928,-21.3731,0,-229.928,-21.3731,-229.928	1/2:64:0,30,34:0:0:30,34:1072,1148:-180.796,-93.3828,-84.3519,-87.7616,0,-77.5265	1/1:124:0,124,0:0:0:124,0:4441,0:-399.859,-37.3277,0,-399.859,-37.3277,-399.859	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:106:0,64,42:0:0:64,42:2296,1444:-304.893,-117.608,-98.3417,-187.635,0,-174.992	1/1:39:0,39,0:0:0:39,0:1396,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:104:0,38,66:0:0:38,66:1360,2235:-292.456,-181.545,-170.106,-111.261,0,-91.3935	1/2:27:0,11,16:0:0:11,16:396,546:-76.9647,-44.6455,-41.3341,-32.6714,0,-27.8549	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0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chr03	20670403	.	G	T	180341	PASS	AB=0.471527;ABP=19.3329;AC=162;AF=0.870968;AN=186;AO=8320;CIGAR=1X;DP=9571;DPB=9571;DPRA=0;EPP=18069.7;EPPR=2706.49;GTI=0;LEN=1;MEANALT=1.06452;MQM=54.0969;MQMR=59.5157;NS=93;NUMALT=1;ODDS=5.89537;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293273;QR=44079;RO=1245;RPL=0;RPP=18069.7;RPPR=2706.49;RPR=8320;RUN=1;SAF=0;SAP=18069.7;SAR=8320;SRF=0;SRP=2706.49;SRR=1245;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:29,20:29:1044:20:716:-49.8528,0,-79.5153	0/1:105:54,51:54:1905:51:1820:-132.003,0,-140.096	0/1:137:58,79:58:2039:79:2784:-208.126,0,-141.571	1/1:228:0,228:0:0:228:8075:-725.385,-68.6348,0	1/1:79:0,79:0:0:79:2754:-247.28,-23.7814,0	1/1:74:0,74:0:0:74:2615:-234.633,-22.2762,0	1/1:249:0,249:0:0:249:8777:-786.905,-74.9565,0	1/1:133:0,133:0:0:133:4724:-423.081,-40.037,0	1/1:84:0,84:0:0:84:2947:-264.631,-25.2865,0	1/1:131:0,131:0:0:131:4614:-413.794,-39.4349,0	1/1:69:0,69:0:0:69:2433:-219.057,-20.7711,0	1/1:78:0,78:0:0:78:2736:-245.829,-23.4803,0	0/1:77:47,30:47:1634:30:1064:-72.5772,0,-124.148	1/1:83:0,82:0:0:82:2857:-255.93,-24.6845,0	1/1:61:0,61:0:0:61:2140:-192.708,-18.3628,0	1/1:60:0,60:0:0:60:2117:-190.542,-18.0618,0	1/1:58:0,58:0:0:58:2039:-182.77,-17.4597,0	1/1:50:0,50:0:0:50:1767:-158.732,-15.0515,0	0/1:55:16,39:16:576:39:1376:-106.906,0,-35.6101	1/1:254:0,254:0:0:254:8947:-803.829,-76.4616,0	1/1:609:0,609:0:0:609:21338:-1914.17,-183.327,0	1/1:154:0,154:0:0:154:5421:-487.095,-46.3586,0	1/1:46:0,46:0:0:46:1579:-142.206,-13.8474,0	1/1:161:0,161:0:0:161:5675:-508.924,-48.4658,0	1/1:82:0,82:0:0:82:2882:-258.552,-24.6845,0	0/1:239:129,110:129:4573:110:3870:-276.317,0,-339.784	1/1:158:1,156:1:36:156:5470:-487.507,-44.023,0	1/1:41:0,41:0:0:41:1443:-129.95,-12.3422,0	1/1:214:0,214:0:0:214:7525:-676.382,-64.4204,0	1/1:114:5,109:5:180:109:3831:-327.712,-17.7737,0	1/1:126:0,126:0:0:126:4445:-399.586,-37.9298,0	0/1:12:4,8:4:144:8:288:-22.6178,0,-9.70126	1/1:17:0,17:0:0:17:608:-54.7122,-5.11751,0	1/1:7:0,7:0:0:7:252:-22.9654,-2.10721,0	1/1:10:0,10:0:0:10:338:-30.6773,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.5503,-1.80618,0	1/1:152:1,151:1:36:151:5285:-471.985,-42.1593,0	1/1:162:0,162:0:0:162:5705:-512.61,-48.7669,0	0/1:101:53,48:53:1887:48:1687:-120.811,0,-139.678	.:.:.:.:.:.:.:.	0/1:136:74,62:74:2599:62:2207:-157.421,0,-193.198	0/1:60:25,34:25:887:34:1216:-91.3127,0,-62.0369	1/1:150:1,149:1:36:149:5271:-469.347,-41.5562,0	1/1:53:0,53:0:0:53:1875:-168.618,-15.9546,0	1/1:61:0,61:0:0:61:2168:-194.638,-18.3628,0	1/1:94:0,94:0:0:94:3330:-299.39,-28.2968,0	1/1:127:0,127:0:0:127:4494:-402.449,-38.2308,0	1/1:155:0,155:0:0:155:5439:-488.599,-46.6597,0	1/1:123:0,123:0:0:123:4374:-393.275,-37.0267,0	0/1:93:49,44:49:1715:44:1560:-112.597,0,-126.634	1/1:160:0,160:0:0:160:5670:-509.447,-48.1648,0	1/1:5:0,5:0:0:5:176:-16.1745,-1.50515,0	0/1:158:94,64:94:3320:64:2277:-156.841,0,-251.241	1/1:84:0,84:0:0:84:2962:-266.446,-25.2865,0	1/1:20:0,20:0:0:20:695:-62.6967,-6.0206,0	0/1:126:59,67:59:2083:67:2381:-176.051,0,-149.806	0/1:36:18,18:18:636:18:640:-47.0496,0,-46.7256	1/1:2:0,2:0:0:2:68:-6.45637,-0.60206,0	1/1:20:0,20:0:0:20:696:-62.9224,-6.0206,0	1/1:78:0,78:0:0:78:2729:-245.126,-23.4803,0	1/1:125:1,124:1:36:124:4411:-392.88,-34.0305,0	1/1:14:0,14:0:0:14:491:-44.4916,-4.21442,0	1/1:133:0,133:0:0:133:4721:-424.822,-40.037,0	1/1:149:0,149:0:0:149:5276:-474.15,-44.8535,0	1/1:110:7,103:7:252:103:3608:-300.94,-10.0843,0	1/1:94:0,94:0:0:94:3343:-300.74,-28.2968,0	1/1:151:0,151:0:0:151:5365:-482.062,-45.4555,0	0/1:160:112,48:112:3991:48:1693:-104.199,0,-311.199	1/1:42:1,41:1:36:41:1449:-126.465,-9.04499,0	1/1:91:1,90:1:32:90:3215:-284.797,-24.1944,0	0/1:77:34,43:34:1192:43:1502:-112.252,0,-84.3697	1/1:28:0,28:0:0:28:984:-88.8116,-8.42884,0	1/1:100:0,99:0:0:99:3346:-300.322,-29.802,0	1/1:64:0,64:0:0:64:2273:-203.185,-19.2659,0	1/1:170:0,170:0:0:170:6021:-540.571,-51.1751,0	1/1:130:0,130:0:0:130:4615:-414.569,-39.1339,0	0/1:102:47,55:47:1666:55:1913:-140.717,0,-119.492	0/1:97:50,47:50:1788:47:1645:-118.662,0,-131.481	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	1/1:100:3,97:3:108:97:3437:-298.862,-20.0278,0	1/1:187:0,186:0:0:186:6508:-583.446,-55.9916,0	1/1:207:1,206:1:36:206:7264:-648.734,-58.7149,0	1/1:90:0,90:0:0:90:3179:-285.962,-27.0927,0	0/1:51:24,27:24:829:27:948:-70.0537,0,-59.5688	0/1:93:53,40:53:1892:40:1420:-100.015,0,-142.547	0/1:113:57,56:57:2014:56:1996:-145.761,0,-147.425	1/1:42:0,42:0:0:42:1470:-132.295,-12.6433,0	1/1:89:0,89:0:0:89:3154:-283.006,-26.7917,0	1/1:75:0,75:0:0:75:2644:-237.269,-22.5773,0	0/1:76:32,44:32:1139:44:1572:-118,0,-79.9355	0/1:90:54,35:54:1928:35:1243:-84.5988,0,-145.845	0/1:75:51,24:51:1810:24:829:-52.299,0,-140.601	1/1:79:0,79:0:0:79:2792:-250.548,-23.7814,0	1/1:98:0,98:0:0:98:3450:-310.325,-29.5009,0
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chr03	20811160	.	T	G	13310.8	PASS	AB=0.332646;ABP=710.922;AC=24;AF=0.131868;AN=182;AO=973;CIGAR=1X;DP=8095;DPB=8095;DPRA=1.61802;EPP=2115.85;EPPR=15466.1;GTI=2;LEN=1;MEANALT=1;MQM=59.1665;MQMR=59.8691;NS=91;NUMALT=1;ODDS=4.96032;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34824;QR=254088;RO=7121;RPL=973;RPP=2115.85;RPPR=15466.1;RPR=0;RUN=1;SAF=0;SAP=2115.85;SAR=973;SRF=0;SRP=15466.1;SRR=7121;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:136:91,45:91:3219:45:1616:-104.77,0,-248.964	0/1:179:136,43:136:4888:43:1544:-85.3596,0,-386.174	0/0:171:171,0:171:6110:0:0:0,-51.4761,-549.868	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.873	0/0:47:47,0:47:1677:0:0:0,-14.1484,-151.215	0/0:102:102,0:102:3634:0:0:0,-30.7051,-327.262	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.631	0/0:65:64,0:64:2255:0:0:0,-19.2659,-202.993	0/1:127:86,41:86:3024:41:1476:-94.6607,0,-234.156	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.729	0/1:113:69,44:69:2484:44:1580:-107.807,0,-189.796	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.902	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:51:33,18:33:1184:18:644:-42.9217,0,-91.5158	0/0:154:154,0:154:5499:0:0:0,-46.3586,-494.929	0/0:109:109,0:109:3856:0:0:0,-32.8123,-347.232	0/0:112:112,0:112:4013:0:0:0,-33.7154,-361.339	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.204	0/1:305:218,87:218:7787:87:3085:-185.25,0,-609.027	0/0:114:114,0:114:4040:0:0:0,-34.3174,-363.784	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:215:215,0:215:7694:0:0:0,-64.7214,-692.486	0/0:133:130,3:130:4630:3:108:0,-29.9618,-406.782	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.134	0/1:25:19,6:19:669:6:216:-12.254,0,-53.0082	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	.:.:.:.:.:.:.:.	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:199:199,0:199:7126:0:0:0,-59.905,-641.316	0/0:187:186,1:186:6634:1:36:0,-52.6943,-593.145	0/1:120:90,30:90:3236:30:1080:-61.2221,0,-255.323	.:.:.:.:.:.:.:.	0/1:107:73,34:73:2624:34:1212:-77.1399,0,-204.194	0/1:55:36,19:36:1292:19:684:-45.3255,0,-100.027	0/0:65:65,0:65:2306:0:0:0,-19.5669,-207.798	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.985	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.367	0/0:54:53,1:53:1881:1:36:0,-12.6573,-165.968	0/0:113:113,0:113:4019:0:0:0,-34.0164,-361.895	0/0:150:150,0:150:5287:0:0:0,-45.1545,-475.725	0/0:95:95,0:95:3367:0:0:0,-28.5978,-303.229	0/1:149:108,41:108:3805:41:1472:-87.8166,0,-297.624	0/0:73:73,0:73:2594:0:0:0,-21.9752,-233.67	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:127:77,50:77:2764:50:1796:-123.622,0,-210.77	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0717	0/1:190:128,62:128:4562:62:2209:-141.552,0,-353.094	0/1:25:22,3:22:777:3:108:-2.54942,0,-62.7246	.:.:.:.:.:.:.:.	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:42:42,0:42:1463:0:0:0,-12.6433,-131.958	0/0:127:127,0:127:4568:0:0:0,-38.2308,-411.269	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:142:142,0:142:5073:0:0:0,-42.7463,-456.714	0/0:150:150,0:150:5370:0:0:0,-45.1545,-483.41	0/0:62:62,0:62:2182:0:0:0,-18.6639,-196.633	0/0:41:41,0:41:1472:0:0:0,-12.3422,-131.585	0/0:100:100,0:100:3547:0:0:0,-30.103,-319.376	0/1:197:114,83:114:4096:83:2968:-208.039,0,-309.521	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.897	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.326	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.645	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:113:113,0:113:4045:0:0:0,-34.0164,-364.23	0/0:146:146,0:146:5218:0:0:0,-43.9504,-469.699	0/1:157:110,47:110:3922:47:1680:-104.025,0,-305.909	0/1:117:72,45:72:2573:45:1616:-110.48,0,-196.597	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:72:72,0:72:2565:0:0:0,-21.6742,-231.099	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:192:192,0:192:6809:0:0:0,-57.7978,-612.165	0/0:99:99,0:99:3541:0:0:0,-29.802,-318.897	0/1:98:58,40:58:2084:40:1440:-100.342,0,-158.329	0/1:100:71,29:71:2511:29:1044:-64.103,0,-196.135	0/1:207:136,71:136:4861:71:2529:-165.019,0,-375.327	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.5763	0/0:85:85,0:85:3041:0:0:0,-25.5875,-273.918	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.753	0/1:59:47,12:47:1673:12:432:-21.4497,0,-133.094	0/1:151:82,69:82:2944:69:2476:-177.603,0,-219.738	0/1:105:57,48:57:2029:48:1701:-121.752,0,-150.809	0/0:58:58,0:58:2028:0:0:0,-17.4597,-182.768	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34
chr03	20874826	.	C	T	150789	PASS	AB=0.494318;ABP=3.55317;AC=164;AF=0.87234;AN=188;AO=6783;CIGAR=1X;DP=7780;DPB=7780;DPRA=0;EPP=14732.1;EPPR=2163.63;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.992;MQMR=60;NS=94;NUMALT=1;ODDS=6.52637;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242764;QR=35551;RO=995;RPL=0;RPP=14732.1;RPPR=2163.63;RPR=6783;RUN=1;SAF=0;SAP=14732.1;SAR=6783;SRF=0;SRP=2163.63;SRR=995;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:12,34:12:423:34:1196:-94.0952,0,-24.5577	0/1:91:43,48:43:1544:48:1724:-128.052,0,-111.859	0/1:73:38,35:38:1360:35:1252:-91.0099,0,-100.725	1/1:160:0,160:0:0:160:5736:-516.355,-48.1648,0	1/1:41:0,41:0:0:41:1451:-130.885,-12.3422,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:57:0,57:0:0:57:2027:-182.701,-17.1587,0	1/1:111:0,111:0:0:111:3988:-359.109,-33.4143,0	1/1:88:0,88:0:0:88:3141:-282.914,-26.4906,0	0/1:84:47,37:47:1688:37:1319:-93.7246,0,-126.92	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0	0/1:70:34,36:34:1212:36:1296:-95.8718,0,-88.3142	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	1/1:54:0,54:0:0:54:1922:-173.257,-16.2556,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:28:13,15:13:464:15:540:-40.5077,0,-33.6687	1/1:84:0,84:0:0:84:2996:-269.87,-25.2865,0	1/1:168:0,168:0:0:168:6002:-540.284,-50.573,0	1/1:91:0,91:0:0:91:3255:-293.17,-27.3937,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:106:0,106:0:0:106:3812:-343.276,-31.9092,0	1/1:73:1,72:1:36:72:2588:-229.57,-18.3769,0	0/1:227:122,105:122:4352:105:3737:-268.197,0,-323.52	1/1:184:2,182:2:72:182:6512:-579.325,-48.5528,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:196:0,196:0:0:196:7027:-632.48,-59.0019,0	1/1:188:4,183:4:144:183:6537:-575.099,-43.3388,0	1/1:118:0,118:0:0:118:4232:-381.059,-35.5215,0	0/1:25:19,6:19:676:6:216:-12.2648,0,-53.6422	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:197:1,196:1:36:196:7027:-628.892,-55.7046,0	1/1:230:2,228:2:72:228:8128:-724.699,-62.4002,0	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9624	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:81:41,40:41:1472:40:1428:-104.434,0,-108.393	0/1:29:11,18:11:396:18:644:-49.5607,0,-27.2529	1/1:111:0,110:0:0:110:3940:-354.432,-33.1133,0	1/1:74:0,74:0:0:74:2648:-238.566,-22.2762,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:78:1,77:1:36:77:2726:-241.983,-19.8821,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:104:0,104:0:0:104:3740:-336.799,-31.3071,0	1/1:83:1,82:1:36:82:2924:-259.797,-21.3872,0	0/1:118:61,57:61:2175:57:2052:-149.43,0,-160.494	1/1:128:3,125:3:108:125:4480:-393.294,-28.4567,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:146:65,81:65:2317:81:2908:-218.005,0,-164.838	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:69:40,29:40:1420:29:1040:-73.1433,0,-107.326	0/1:70:28,42:28:1000:42:1489:-113.23,0,-69.2433	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:84:0,84:0:0:84:3001:-270.321,-25.2865,0	1/1:107:0,107:0:0:107:3838:-345.615,-32.2102,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:135:0,135:0:0:135:4821:-434.04,-40.6391,0	1/1:167:0,167:0:0:167:5992:-539.384,-50.272,0	1/1:119:0,119:0:0:119:4280:-385.376,-35.8226,0	1/1:62:0,62:0:0:62:2203:-198.533,-18.6639,0	1/1:109:0,109:0:0:109:3866:-348.135,-32.8123,0	0/1:67:42,25:42:1503:25:900:-61.152,0,-115.395	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:83:1,82:1:36:82:2918:-259.257,-21.3872,0	1/1:23:0,23:0:0:23:819:-74.0322,-6.92369,0	1/1:135:0,135:0:0:135:4814:-433.415,-40.6391,0	1/1:89:0,89:0:0:89:3173:-285.793,-26.7917,0	1/1:114:0,114:0:0:114:4077:-367.114,-34.3174,0	1/1:311:0,311:0:0:311:11149:-1003.29,-93.6203,0	0/1:40:18,22:18:648:22:788:-59.2036,0,-46.6107	0/1:108:51,57:51:1819:57:2044:-151.72,0,-131.479	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:97:0,97:0:0:97:3476:-313.051,-29.1999,0	1/1:71:0,71:0:0:71:2535:-228.401,-21.3731,0	1/1:122:0,122:0:0:122:4374:-393.833,-36.7257,0	1/1:99:0,99:0:0:99:3553:-319.978,-29.802,0	0/1:67:33,34:33:1188:34:1220:-89.9378,0,-87.0596	0/1:94:46,48:46:1627:48:1728:-127.508,0,-118.421	0/1:154:86,68:86:3084:68:2432:-172.777,0,-231.429	1/1:50:0,50:0:0:50:1790:-161.382,-15.0515,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:73:0,73:0:0:73:2624:-236.351,-21.9752,0	0/1:53:19,34:19:672:34:1218:-93.9719,0,-44.8522	0/1:84:38,46:38:1360:46:1636:-122.242,0,-97.4141	0/1:70:50,20:50:1783:20:720:-44.0567,0,-139.68	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:87:0,87:0:0:87:3103:-279.497,-26.1896,0
chr03	20955308	.	G	C	25844.8	PASS	AB=0.52059;ABP=13.741;AC=24;AF=0.12766;AN=188;AO=1524;CIGAR=1X;DP=11764;DPB=11764;DPRA=1.05581;EPP=3312.33;EPPR=22089.2;GTI=0;LEN=1;MEANALT=1.17241;MQM=59.6667;MQMR=55.8846;NS=94;NUMALT=1;ODDS=6.50673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54357;QR=363991;RO=10231;RPL=0;RPP=3312.33;RPPR=22089.2;RPR=1524;RUN=1;SAF=0;SAP=3312.33;SAR=1524;SRF=0;SRP=22219.3;SRR=10231;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:26,44:26:921:44:1576:-120.507,0,-61.75	0/1:103:44,59:44:1557:59:2112:-159.318,0,-109.376	0/1:241:118,123:118:4178:123:4391:-322.777,0,-303.074	0/0:369:369,0:369:13130:0:0:0,-111.08,-1177.65	0/0:83:83,0:83:2971:0:0:0,-24.9855,-266.492	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.626	0/0:108:108,0:108:3854:0:0:0,-32.5112,-346.512	0/0:201:199,1:199:7052:1:36:0,-56.9723,-630.072	0/0:137:137,0:137:4878:0:0:0,-41.2411,-438.86	0/1:67:32,35:32:1144:35:1236:-91.3725,0,-82.2293	0/0:41:41,0:41:1454:0:0:0,-12.3422,-130.785	0/0:87:87,0:87:3084:0:0:0,-26.1896,-276.402	0/1:73:44,29:44:1552:29:1029:-70.946,0,-117.247	0/0:66:66,0:66:2319:0:0:0,-19.868,-208.769	0/0:78:78,0:78:2768:0:0:0,-23.4803,-248.564	0/0:47:47,0:47:1688:0:0:0,-14.1484,-151.785	0/0:27:27,0:27:968:0:0:0,-8.12781,-86.4599	0/0:30:30,0:30:1052:0:0:0,-9.0309,-94.8923	0/1:29:18,11:18:623:11:396:-27.2529,0,-46.7904	0/0:306:305,0:305:10859:0:0:0,-91.8141,-973.723	0/0:211:211,0:211:7506:0:0:0,-63.5173,-674.222	0/0:253:253,0:253:8999:0:0:0,-76.1606,-807.831	0/0:212:212,0:212:7553:0:0:0,-63.8184,-678.366	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.544	0/0:110:110,0:110:3931:0:0:0,-33.1133,-353.532	0/1:307:148,159:148:5265:159:5656:-416.247,0,-380.605	0/0:342:342,0:342:12198:0:0:0,-102.952,-1096.12	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0396	0/0:372:372,0:372:13201:0:0:0,-111.983,-1185.53	0/0:168:165,3:165:5893:3:108:0,-40.4979,-518.536	0/0:198:198,0:198:7020:0:0:0,-59.6039,-630.857	0/1:14:11,3:11:387:3:108:-5.86075,0,-30.6198	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.0824	0/0:24:24,0:24:864:0:0:0,-7.22472,-75.9657	0/0:30:30,0:30:1053:0:0:0,-9.0309,-93.8904	0/0:43:43,0:43:1516:0:0:0,-12.9443,-134.911	0/0:190:190,0:190:6726:0:0:0,-57.1957,-604.93	0/0:180:180,0:180:6390:0:0:0,-54.1854,-573.823	0/1:62:36,26:36:1277:26:936:-65.891,0,-95.8475	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.4118	0/1:171:107,64:107:3819:64:2284:-154.26,0,-291.884	0/1:33:12,21:12:424:21:755:-58.3394,0,-28.4731	0/0:201:201,0:201:7178:0:0:0,-60.507,-645.309	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.468	0/0:50:50,0:50:1745:0:0:0,-15.0515,-157.138	0/0:142:142,0:142:5067:0:0:0,-42.7463,-454.684	0/0:164:164,0:164:5858:0:0:0,-49.3689,-526.133	0/0:231:231,0:231:8261:0:0:0,-69.5379,-742.743	0/0:122:122,0:122:4307:0:0:0,-36.7257,-386.851	0/1:162:89,72:89:3157:72:2579:-183.531,0,-234.911	0/0:164:163,1:163:5812:1:36:0,-45.7706,-518.707	0/0:26:26,0:26:928:0:0:0,-7.82678,-82.0744	0/1:183:88,95:88:3129:95:3398:-250.926,0,-226.414	0/0:140:140,0:140:4991:0:0:0,-42.1442,-448.816	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.3252	0/1:241:118,122:118:4176:122:4335:-317.811,0,-302.895	0/1:88:49,39:49:1739:39:1386:-98.4949,0,-129.63	0/0:15:15,0:15:536:0:0:0,-4.51545,-47.6009	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.9985	0/0:148:148,0:148:5259:0:0:0,-44.5524,-471.636	0/0:112:112,0:112:3984:0:0:0,-33.7154,-358.267	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2054	0/0:244:244,0:244:8705:0:0:0,-73.4513,-782.324	0/0:237:236,1:236:8393:1:36:0,-67.7458,-750.127	0/0:83:82,1:82:2882:1:32:0,-21.7862,-256.238	0/0:137:137,0:137:4881:0:0:0,-41.2411,-438.623	0/0:327:327,0:327:11627:0:0:0,-98.4368,-1044.35	0/1:268:78,190:78:2792:190:6779:-529.471,0,-169.726	0/0:36:36,0:36:1288:0:0:0,-10.8371,-115.613	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.049	0/0:32:32,0:32:1144:0:0:0,-9.63296,-102.957	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.733	0/0:206:206,0:206:7318:0:0:0,-62.0122,-656.911	0/0:131:131,0:131:4644:0:0:0,-39.4349,-417.406	0/0:140:140,0:140:4940:0:0:0,-42.1442,-444.276	0/0:276:276,0:276:9849:0:0:0,-83.0843,-883.369	0/1:184:73,110:73:2599:110:3935:-298.838,0,-178.234	0/1:153:69,84:69:2472:84:3012:-225.233,0,-175.59	0/0:50:50,0:50:1788:0:0:0,-15.0515,-158.551	0/0:192:192,0:192:6833:0:0:0,-57.7978,-614.292	0/0:231:231,0:231:8224:0:0:0,-69.5379,-736.411	0/0:252:251,0:251:8950:0:0:0,-75.5585,-802.745	0/0:60:60,0:60:2131:0:0:0,-18.0618,-191.629	0/1:55:28,27:28:1004:27:968:-70.876,0,-73.7837	0/1:42:20,22:20:720:22:783:-58.145,0,-52.4313	0/1:125:70,55:70:2495:55:1950:-138.139,0,-186.569	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.5567	0/0:60:60,0:60:2131:0:0:0,-18.0618,-191.934	0/0:69:69,0:69:2447:0:0:0,-20.7711,-219.42	0/1:38:28,10:28:1008:10:352:-20.5791,0,-78.9684	0/1:105:52,53:52:1825:53:1874:-137.329,0,-132.725	0/1:97:33,64:33:1169:64:2279:-176.162,0,-76.0746	0/0:180:180,0:180:6403:0:0:0,-54.1854,-574.906	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.075
chr03	20983524	.	G	A	16967.6	PASS	AB=0.551032;ABP=43.5683;AC=24;AF=0.129032;AN=186;AO=996;CIGAR=1X;DP=6265;DPB=6265;DPRA=1.22237;EPP=2165.8;EPPR=11440.2;GTI=2;LEN=1;MEANALT=1;MQM=59.9297;MQMR=59.9275;NS=93;NUMALT=1;ODDS=0.672672;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35529;QR=188151;RO=5267;RPL=0;RPP=2165.8;RPPR=11440.2;RPR=996;RUN=1;SAF=996;SAP=2165.8;SAR=0;SRF=5267;SRP=11440.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:11,18:11:396:18:648:-49.922,0,-27.2529	0/1:40:16,24:16:572:24:852:-64.951,0,-39.7722	0/1:87:38,49:38:1368:49:1760:-132.493,0,-97.2312	0/0:116:116,0:116:4119:0:0:0,-34.9195,-370.892	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:102:102,0:102:3600:0:0:0,-30.7051,-324.195	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.165	0/1:69:41,28:41:1460:28:1000:-69.5443,0,-110.925	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/1:72:37,35:37:1324:35:1255:-91.5812,0,-97.787	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.431	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.981	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.612	0/0:127:127,0:127:4553:0:0:0,-38.2308,-409.934	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:72:72,0:72:2543:0:0:0,-21.6742,-229.117	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:269:98,171:98:3508:171:6078:-466.147,0,-234.946	0/0:146:145,0:145:5182:0:0:0,-43.6493,-466.155	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.654	0/0:125:125,0:125:4465:0:0:0,-37.6287,-401.164	0/0:83:79,4:79:2813:4:144:0,-11.6719,-240.09	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:175:175,0:175:6246:0:0:0,-52.6802,-562.232	0/0:72:72,0:72:2550:0:0:0,-21.6742,-228.381	0/1:37:16,21:16:576:21:752:-56.8681,0,-41.0369	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:96:38,58:38:1368:58:2048:-155.688,0,-94.5219	0/1:39:26,13:26:936:13:464:-30.3573,0,-72.8193	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.023	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.619	0/0:68:68,0:68:2433:0:0:0,-20.47,-219.224	0/0:97:97,0:97:3477:0:0:0,-29.1999,-313.135	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.229	0/1:95:49,46:49:1741:46:1644:-119.651,0,-128.375	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:98:46,52:46:1648:52:1864:-138.538,0,-119.108	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:116:56,60:56:1996:60:2129:-156.953,0,-144.995	0/1:18:11,7:11:396:7:248:-17.2433,0,-30.5642	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0742	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:64:63,1:63:2260:1:32:0,-16.0666,-200.463	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.333	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:191:190,0:190:6770:0:0:0,-57.1957,-609.043	0/0:151:150,1:150:5354:1:36:0,-41.8573,-478.392	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:54:54,0:54:1895:0:0:0,-16.2556,-170.729	0/0:70:68,2:68:2440:2:72:0,-14.2354,-213.018	0/1:114:43,71:43:1529:71:2543:-194.311,0,-103.584	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.747	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.885	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/0:39:39,0:39:1377:0:0:0,-11.7402,-124.227	0/0:94:94,0:94:3350:0:0:0,-28.2968,-301.714	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.779	0/0:149:149,0:149:5322:0:0:0,-44.8535,-479.097	0/1:69:16,53:16:576:53:1908:-151.226,0,-31.4039	0/1:79:37,42:37:1305:42:1493:-110.877,0,-93.9522	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:83:83,0:83:2954:0:0:0,-24.9855,-266.091	0/0:83:83,0:83:2946:0:0:0,-24.9855,-265.335	0/0:147:147,0:147:5234:0:0:0,-44.2514,-471.197	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:74:40,34:40:1436:34:1220:-87.8306,0,-107.261	0/1:38:20,18:20:720:18:618:-44.4991,0,-53.6896	0/1:130:59,71:59:2112:71:2548:-190.436,0,-151.215	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:64:64,0:64:2289:0:0:0,-19.2659,-206.27	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.91	0/1:47:20,27:20:720:27:942:-70.9414,0,-50.9804	0/1:78:50,28:50:1784:28:1008:-67.556,0,-137.362	0/1:75:25,50:25:896:50:1791:-138.893,0,-58.3831	0/0:115:115,0:115:4121:0:0:0,-34.6184,-371.072	0/0:101:101,0:101:3601:0:0:0,-30.404,-324.296
chr03	20990167	.	G	A	97916.2	PASS	AB=0.565985;ABP=43.7032;AC=164;AF=0.87234;AN=188;AO=4374;CIGAR=1X;DP=4845;DPB=4845;DPRA=0;EPP=9501.03;EPPR=1023.6;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9463;MQMR=59.9277;NS=94;NUMALT=1;ODDS=8.0465;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156631;QR=16836;RO=470;RPL=4374;RPP=9501.03;RPPR=1023.6;RPR=0;RUN=1;SAF=0;SAP=9501.03;SAR=4374;SRF=0;SRP=1023.6;SRR=470;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:10,17:10:360:17:612:-47.2856,0,-24.6165	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/1:40:22,18:22:788:18:629:-44.8926,0,-59.1954	1/1:104:0,104:0:0:104:3736:-336.282,-31.3071,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:89:0,89:0:0:89:3168:-285.343,-26.7917,0	0/1:58:29,29:29:1040:29:1044:-76.8151,0,-76.4546	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	0/1:40:19,21:19:676:21:756:-56.326,0,-49.1268	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:17:6,11:6:212:11:392:-30.5025,0,-14.3073	1/1:96:0,96:0:0:96:3452:-310.891,-28.8989,0	1/1:109:0,109:0:0:109:3901:-350.965,-32.8123,0	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	1/1:75:0,75:0:0:75:2669:-240.441,-22.5773,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	0/1:165:66,98:66:2364:98:3524:-267.639,0,-163.29	1/1:162:0,162:0:0:162:5800:-522.085,-48.7669,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:130:0,130:0:0:130:4659:-419.441,-39.1339,0	0/1:50:5,45:5:180:45:1577:-127.166,0,-1.50056	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:147:0,147:0:0:147:5265:-473.986,-44.2514,0	1/1:72:0,72:0:0:72:2574:-231.907,-21.6742,0	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:59:24,35:24:848:35:1229:-93.1405,0,-58.8789	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	1/1:53:0,53:0:0:53:1897:-171.007,-15.9546,0	1/1:27:0,27:0:0:27:972:-87.797,-8.12781,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:94:0,94:0:0:94:3372:-303.679,-28.2968,0	1/1:64:0,64:0:0:64:2292:-206.532,-19.2659,0	1/1:115:0,115:0:0:115:4089:-368.193,-34.6185,0	1/1:44:0,44:0:0:44:1584:-142.838,-13.2453,0	0/1:30:12,18:12:432:18:648:-49.621,0,-30.1879	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:32:9,23:9:320:23:828:-65.2112,0,-19.5094	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:50:22,28:22:792:28:996:-74.9034,0,-56.5542	0/1:22:10,12:10:360:12:426:-32.0547,0,-26.1193	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:56:0,56:0:0:56:2012:-181.351,-16.8577,0	1/1:57:1,56:1:36:56:2008:-177.377,-13.5604,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:113:0,113:0:0:113:4040:-363.786,-34.0164,0	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0	1/1:50:0,50:0:0:50:1780:-160.483,-15.0515,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:69:1,68:1:32:68:2443:-216.915,-17.5718,0	0/1:87:50,37:50:1796:37:1328:-93.622,0,-135.647	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:83:1,82:1:36:82:2944:-261.595,-21.3872,0	1/1:45:1,44:1:36:44:1572:-138.173,-9.94808,0	1/1:116:0,116:0:0:116:4119:-370.89,-34.9195,0	1/1:58:0,58:0:0:58:2073:-186.839,-17.4597,0	0/1:31:13,18:13:468:18:633:-47.9631,0,-33.1277	0/1:49:19,30:19:680:30:1071:-81.9511,0,-46.7787	1/1:25:0,25:0:0:25:884:-79.8784,-7.52575,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:46:0,46:0:0:46:1652:-148.772,-13.8474,0	1/1:166:0,166:0:0:166:5938:-534.525,-49.971,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:48:22,26:22:788:26:936:-70.11,0,-56.7954	0/1:26:13,13:13:464:13:468:-34.6329,0,-34.2707	0/1:95:47,48:47:1688:48:1728:-127.194,0,-123.609	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	0/1:54:23,31:23:828:31:1112:-84.1356,0,-58.5885	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	1/1:103:0,103:0:0:103:3688:-332.123,-31.0061,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0
chr03	21087983	.	A	G	17572	PASS	AB=0.530813;ABP=18.9348;AC=24;AF=0.129032;AN=186;AO=1034;CIGAR=1X;DP=7156;DPB=7156;DPRA=1.12012;EPP=2248.31;EPPR=13285.9;GTI=0;LEN=1;MEANALT=1;MQM=59.9865;MQMR=59.9933;NS=93;NUMALT=1;ODDS=0.337215;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37027;QR=219221;RO=6117;RPL=1034;RPP=2248.31;RPPR=13285.9;RPR=0;RUN=1;SAF=0;SAP=2248.31;SAR=1034;SRF=0;SRP=13285.9;SRR=6117;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:28,39:28:1004:39:1404:-106.49,0,-70.5069	0/1:73:30,43:30:1080:43:1540:-116.918,0,-75.5381	0/1:205:125,80:125:4480:80:2864:-196.286,0,-341.658	0/0:149:149,0:149:5344:0:0:0,-44.8535,-481.092	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:105:105,0:105:3745:0:0:0,-31.6081,-337.25	0/0:151:151,0:151:5412:0:0:0,-45.4555,-487.209	0/1:81:43,38:43:1544:38:1356:-97.9571,0,-114.87	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:94:94,0:94:3371:0:0:0,-28.2968,-303.605	0/1:49:23,26:23:828:26:936:-69.809,0,-60.0936	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.424	0/0:53:51,2:51:1827:2:72:0,-9.11787,-157.874	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:17:16,1:16:576:1:36:0,-1.51923,-48.5767	0/1:18:8,10:8:288:10:347:-26.1451,0,-20.8489	0/0:142:141,1:141:5068:1:36:0,-39.148,-452.664	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.553	0/0:174:174,0:174:6217:0:0:0,-52.3792,-559.626	0/0:87:86,1:86:3092:1:36:0,-22.5913,-274.909	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:101:100,0:100:3562:0:0:0,-30.103,-320.574	0/1:209:109,100:109:3916:100:3577:-259.222,0,-289.716	0/0:241:240,0:240:8590:0:0:0,-72.2472,-772.882	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:188:188,0:188:6732:0:0:0,-56.5936,-605.954	0/0:150:149,1:149:5341:1:36:0,-41.5562,-477.222	0/0:55:54,1:54:1932:1:36:0,-12.9584,-170.558	0/1:10:2,8:2:68:8:288:-23.2571,0,-3.44741	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:129:129,0:129:4623:0:0:0,-38.8329,-416.232	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871	0/1:39:20,19:20:720:19:684:-50.1502,0,-53.3886	.:.:.:.:.:.:.:.	0/1:82:43,39:43:1540:39:1400:-101.614,0,-114.209	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/0:200:200,0:200:7143:0:0:0,-60.206,-642.924	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:117:116,0:116:4153:0:0:0,-34.9195,-373.739	0/0:139:139,0:139:4962:0:0:0,-41.8432,-446.727	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/1:84:45,39:45:1608:39:1400:-101.013,0,-119.724	0/0:119:119,0:119:4260:0:0:0,-35.8226,-383.579	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:126:39,87:39:1404:87:3124:-243.451,0,-88.7295	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:127:58,69:58:2084:69:2456:-183.064,0,-149.599	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.9085	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:134:132,2:132:4732:2:72:0,-33.5013,-419.201	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:155:155,0:155:5568:0:0:0,-46.6596,-501.241	0/1:133:20,113:20:720:113:4060:-325.549,0,-25.0918	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.429	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/0:116:116,0:116:4176:0:0:0,-34.9195,-376.02	0/0:74:73,0:73:2624:0:0:0,-21.9752,-236.086	0/0:177:177,0:177:6360:0:0:0,-53.2823,-572.487	0/1:109:71,38:71:2552:38:1349:-88.896,0,-197.118	0/1:100:41,59:41:1468:59:2116:-160.606,0,-102.313	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.517	0/0:184:184,0:184:6582:0:0:0,-55.3895,-592.458	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:48:27,21:27:972:21:756:-53.9178,0,-73.3485	0/1:33:19,14:19:684:14:500:-35.4022,0,-51.9563	0/1:111:58,53:58:2080:53:1904:-138.223,0,-154.056	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:71:70,0:70:2512:0:0:0,-21.0721,-226.12	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/1:85:35,50:35:1260:50:1774:-134.348,0,-88.1179	0/1:52:14,38:14:500:38:1356:-106.687,0,-29.6826	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882
chr03	21098734	.	T	G	239254	PASS	AB=0.543379;ABP=49.5433;AC=162;AF=0.870968;AN=186;AO=10697;CIGAR=1X;DP=12016;DPB=12016;DPRA=0;EPP=22980;EPPR=2817.4;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.9899;MQMR=59.9802;NS=93;NUMALT=1;ODDS=10.6971;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=381668;QR=47221;RO=1316;RPL=30;RPP=22971.4;RPPR=2817.4;RPR=10667;RUN=1;SAF=10696;SAP=23222.6;SAR=1;SRF=1316;SRP=2860.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:9,22:9:320:22:788:-61.9129,0,-19.8104	0/1:135:51,84:51:1828:84:2990:-228.69,0,-124.162	0/1:108:52,56:52:1868:56:1989:-146.771,0,-135.888	1/1:317:0,317:0:0:317:11299:-1016.79,-95.4265,0	1/1:130:0,130:0:0:130:4607:-414.793,-39.1339,0	1/1:110:0,110:0:0:110:3929:-353.802,-33.1133,0	1/1:333:0,333:0:0:333:11814:-1063.12,-100.243,0	1/1:136:0,136:0:0:136:4822:-434.134,-40.9401,0	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	0/1:131:53,78:53:1908:78:2789:-211.814,0,-132.563	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:68:1,67:1:36:67:2404:-213.018,-16.8718,0	0/1:61:38,23:38:1360:23:828:-56.4813,0,-104.338	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:56:0,56:0:0:56:1997:-180.002,-16.8577,0	0/1:49:28,21:28:1008:21:756:-53.6168,0,-76.2859	1/1:393:1,392:1:36:392:14015:-1257.52,-114.707,0	1/1:216:0,216:0:0:216:7688:-691.954,-65.0225,0	1/1:231:1,230:1:36:230:8233:-737.381,-65.9397,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:167:0,167:0:0:167:5927:-533.539,-50.272,0	1/1:105:0,105:0:0:105:3757:-338.328,-31.6082,0	0/1:370:110,259:110:3948:259:9243:-720.546,0,-244.219	1/1:265:0,265:0:0:265:9455:-850.909,-79.773,0	1/1:40:1,39:1:36:39:1400:-122.701,-8.44293,0	1/1:414:0,414:0:0:414:14806:-1331.64,-124.626,0	1/1:269:8,261:8:288:261:9331:-813.484,-54.7097,0	1/1:176:0,176:0:0:176:6275:-564.841,-52.9813,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:189:0,189:0:0:189:6772:-609.549,-56.8947,0	1/1:277:0,277:0:0:277:9883:-889.411,-83.3853,0	0/1:67:30,37:30:1072:37:1324:-99.2931,0,-76.6234	.:.:.:.:.:.:.:.	0/1:464:206,258:206:7396:258:9181:-686.582,0,-526.006	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	1/1:186:1,185:1:36:185:6584:-589.041,-52.3933,0	1/1:62:1,61:1:36:61:2173:-192.647,-15.4762,0	1/1:62:0,62:0:0:62:2212:-199.345,-18.6639,0	1/1:104:0,104:0:0:104:3702:-333.38,-31.3071,0	1/1:178:0,178:0:0:178:6383:-574.557,-53.5833,0	1/1:267:0,267:0:0:267:9537:-858.279,-80.375,0	1/1:201:0,201:0:0:201:7201:-648.142,-60.507,0	0/1:121:53,68:53:1900:68:2408:-180.55,0,-134.853	1/1:268:0,268:0:0:268:9555:-859.905,-80.676,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:206:97,109:97:3472:109:3857:-285.314,0,-250.68	1/1:93:0,93:0:0:93:3325:-299.466,-27.9958,0	1/1:19:0,19:0:0:19:665:-60.1728,-5.71957,0	0/1:168:91,77:91:3268:77:2710:-193.568,0,-243.766	0/1:25:8,17:8:288:17:597:-46.5304,0,-18.7417	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:69:0,69:0:0:69:2464:-221.997,-20.7711,0	1/1:129:0,129:0:0:129:4634:-417.221,-38.8329,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:299:0,299:0:0:299:10686:-961.647,-90.008,0	1/1:264:0,264:0:0:264:9347:-841.196,-79.4719,0	1/1:111:0,111:0:0:111:3957:-356.319,-33.4143,0	1/1:113:0,113:0:0:113:4048:-364.507,-34.0164,0	1/1:224:1,223:1:36:223:7921:-709.316,-63.8324,0	0/1:188:101,87:101:3621:87:3120:-224.433,0,-269.499	1/1:27:1,26:1:36:26:936:-80.9608,-4.52954,0	1/1:120:0,120:0:0:120:4286:-385.915,-36.1236,0	1/1:80:0,80:0:0:80:2849:-256.647,-24.0824,0	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:212:2,210:2:72:210:7475:-665.955,-56.9816,0	1/1:83:0,83:0:0:83:2950:-265.731,-24.9855,0	1/1:194:0,194:0:0:194:6953:-625.832,-58.3998,0	1/1:202:0,202:0:0:202:7237:-651.381,-60.8081,0	0/1:110:60,50:60:2152:50:1788:-128.089,0,-160.834	0/1:105:46,59:46:1652:59:2116:-159.101,0,-117.36	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:146:0,146:0:0:146:5229:-470.746,-43.9504,0	1/1:186:0,186:0:0:186:6616:-595.519,-55.9916,0	1/1:378:1,377:1:36:377:13408:-1202.83,-110.191,0	1/1:112:0,112:0:0:112:4005:-360.638,-33.7154,0	0/1:68:37,29:37:1332:29:1029:-72.7637,0,-100.026	0/1:77:38,39:38:1360:39:1396:-102.76,0,-99.5213	0/1:127:56,71:56:2004:71:2552:-191.699,0,-142.403	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:44:26,18:26:932:18:633:-44.0497,0,-70.9535	0/1:102:53,49:53:1908:49:1745:-126.627,0,-141.292	0/1:56:37,19:37:1328:19:684:-45.0326,0,-102.965	1/1:138:0,138:0:0:138:4879:-439.261,-41.5421,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0
chr03	21098843	.	GTAC	ATAT,ATAC	150164	PASS	AB=0.527473,0.46989;ABP=17.9243,20.9252;AC=165,23;AF=0.87766,0.12234;AN=188;AO=9217,1077;CIGAR=1X2M1X,1X3M;DP=10323;DPB=10323.8;DPRA=0,0.992409;EPP=20017.5,2341.69;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.59574,2.34483;MQM=26.857,39.4141;MQMR=60;NS=94;NUMALT=2;ODDS=14.8784;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=54,54;PQR=0;PRO=0;QA=328479,38304;QR=36;RO=1;RPL=9217,1077;RPP=20017.5,2341.69;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=20017.5,2341.69;SAR=9217,1077;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,17,15:0:0:17,15:610,532:-77.2315,-41.8884,-36.7708,-35.6485,0,-31.1331	1/2:66:0,32,34:0:0:32,34:1145,1224:-162.585,-95.8423,-86.2094,-67.0464,0,-56.8114	1/2:105:0,66,39:0:0:66,39:2348,1374:-244.577,-107.614,-87.7465,-137.274,0,-125.534	1/1:262:0,262,0:0:0:262,0:9351,0:-582.163,-78.8699,0,-582.163,-78.8699,-582.163	1/1:100:0,100,0:0:0:100,0:3580,0:-239.907,-30.103,0,-239.907,-30.103,-239.907	1/1:63:0,63,0:0:0:63,0:2257,0:-149.72,-18.9649,0,-149.72,-18.9649,-149.72	1/1:226:0,226,0:0:0:226,0:8047,0:-501.649,-68.0328,0,-501.649,-68.0328,-501.649	1/1:136:0,136,0:0:0:136,0:4846,0:-322.399,-40.9401,0,-322.399,-40.9401,-322.399	1/1:125:0,125,0:0:0:125,0:4456,0:-297.411,-37.6288,0,-297.411,-37.6288,-297.411	1/2:112:0,79,33:0:0:79,33:2817,1173:-241.021,-88.6462,-64.8648,-152.681,0,-142.747	1/1:66:0,65,0:0:0:65,0:2327,0:-144.81,-19.567,0,-144.81,-19.567,-144.81	1/1:69:0,69,0:0:0:69,0:2464,0:-164.465,-20.7711,0,-164.465,-20.7711,-164.465	1/2:77:0,44,33:0:0:44,33:1558,1150:-180.212,-89.5207,-76.2754,-90.9951,0,-81.0611	1/1:67:0,67,0:0:0:67,0:2356,0:-158.735,-20.169,0,-158.735,-20.169,-158.735	1/1:65:0,65,0:0:0:65,0:2333,0:-144.633,-19.567,0,-144.633,-19.567,-144.633	1/1:46:0,45,0:0:0:45,0:1610,0:-106.77,-13.5464,0,-106.77,-13.5464,-106.77	1/1:77:0,77,0:0:0:77,0:2755,0:-183.709,-23.1793,0,-183.709,-23.1793,-183.709	1/1:60:1,59,0:1:36:59,0:2116,0:-136.546,-14.4635,0,-136.847,-17.7608,-139.786	1/2:48:0,25,22:0:0:25,22:883,782:-112.194,-60.5911,-53.0653,-51.5632,0,-44.9406	1/1:262:0,262,0:0:0:262,0:9310,0:-583.396,-78.8699,0,-583.396,-78.8699,-583.396	1/1:193:0,193,0:0:0:193,0:6858,0:-460.428,-58.0988,0,-460.428,-58.0988,-460.428	1/1:221:0,221,0:0:0:221,0:7881,0:-572.252,-66.5276,0,-572.252,-66.5276,-572.252	1/1:112:0,112,0:0:0:112,0:3982,0:-249.557,-33.7154,0,-249.557,-33.7154,-249.557	1/1:128:0,128,0:0:0:128,0:4548,0:-304.904,-38.5318,0,-304.904,-38.5318,-304.904	1/1:93:0,92,0:0:0:92,0:3272,0:-218.553,-27.6948,0,-218.553,-27.6948,-218.553	1/2:331:0,179,151:0:0:179,151:6379,5372:-838.684,-428.78,-374.896,-409.959,0,-364.504	1/1:280:0,279,0:0:0:279,0:9943,0:-664.234,-83.9874,0,-664.234,-83.9874,-664.234	1/1:29:0,29,0:0:0:29,0:1042,0:-69.0427,-8.72987,0,-69.0427,-8.72987,-69.0427	1/1:439:0,438,0:0:0:438,0:15607,0:-1136.78,-131.851,0,-1136.78,-131.851,-1136.78	1/1:134:0,128,3:0:0:128,3:4571,108:-304.551,-38.5318,0,-296.125,-30.0548,-295.222	1/1:155:0,155,0:0:0:155,0:5523,0:-345.753,-46.6597,0,-345.753,-46.6597,-345.753	1/1:5:0,5,0:0:0:5,0:180,0:-11.7553,-1.50515,0,-11.7553,-1.50515,-11.7553	1/1:15:0,14,1:0:0:14,1:503,36:-33.2859,-4.21442,0,-30.4725,-1.06096,-30.1715	1/1:2:0,2,0:0:0:2,0:72,0:-5.03234,-0.60206,0,-5.03234,-0.60206,-5.03234	1/1:11:0,11,0:0:0:11,0:395,0:-26.4748,-3.31133,0,-26.4748,-3.31133,-26.4748	1/1:5:0,5,0:0:0:5,0:174,0:-12.0688,-1.50515,0,-12.0688,-1.50515,-12.0688	1/1:205:0,205,0:0:0:205,0:7343,0:-532.96,-61.7112,0,-532.96,-61.7112,-532.96	1/1:213:0,213,0:0:0:213,0:7569,0:-508.148,-64.1194,0,-508.148,-64.1194,-508.148	1/2:61:0,31,30:0:0:31,30:1112,1076:-148.873,-84.4109,-75.0789,-64.7677,0,-55.7368	1/1:2:0,2,0:0:0:2,0:72,0:-5.03234,-0.60206,0,-5.03234,-0.60206,-5.03234	1/2:171:0,93,78:0:0:93,78:3341,2788:-410.888,-217.446,-189.451,-193.749,0,-170.268	1/2:47:0,26,21:0:0:26,21:926,756:-113.269,-59.3137,-51.4869,-54.2641,0,-47.9425	1/1:170:0,170,0:0:0:170,0:6072,0:-405.113,-51.1751,0,-405.113,-51.1751,-405.113	1/1:85:0,85,0:0:0:85,0:3035,0:-189.282,-25.5876,0,-189.282,-25.5876,-189.282	1/1:63:0,62,0:0:0:62,0:2202,0:-137.444,-18.6639,0,-137.444,-18.6639,-137.444	1/1:124:0,124,0:0:0:124,0:4383,0:-319.315,-37.3277,0,-319.315,-37.3277,-319.315	1/1:130:0,129,0:0:0:129,0:4588,0:-307.097,-38.8329,0,-307.097,-38.8329,-307.097	1/1:189:0,187,0:0:0:187,0:6642,0:-414.923,-56.2926,0,-414.923,-56.2926,-414.923	1/1:164:0,163,0:0:0:163,0:5781,0:-361.977,-49.0679,0,-361.977,-49.0679,-361.977	1/2:91:0,48,43:0:0:48,43:1721,1537:-208.18,-116.163,-101.714,-92.3085,0,-79.3642	1/1:207:0,206,0:0:0:206,0:7370,0:-533.059,-62.0122,0,-533.059,-62.0122,-533.059	1/1:10:0,10,0:0:0:10,0:360,0:-22.4488,-3.0103,0,-22.4488,-3.0103,-22.4488	1/2:152:0,90,62:0:0:90,62:3233,2208:-359.461,-171.884,-144.792,-187.828,0,-169.164	1/1:64:0,64,0:0:0:64,0:2283,0:-166.781,-19.2659,0,-166.781,-19.2659,-166.781	1/1:14:0,14,0:0:0:14,0:489,0:-33.0084,-4.21442,0,-33.0084,-4.21442,-33.0084	1/2:117:0,71,46:0:0:71,46:2530,1639:-275.646,-128.042,-106.669,-147.915,0,-134.067	1/2:63:0,26,36:0:0:26,36:929,1270:-145.547,-9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chr03	21115833	.	CGCT	TGCA,CGCA	118997	PASS	AB=0.474727,0.518443;ABP=11.1326,7.33545;AC=162,24;AF=0.870968,0.129032;AN=186;AO=4645,763;CIGAR=1X2M1X,3M1X;DP=5440;DPB=5440;DPRA=0,1.02123;EPP=10020.1,1651.17;EPPR=3.73412;GTI=0;LEN=4,1;MEANALT=1.55914,2.2963;MQM=59.938,59.979;MQMR=54.3333;NS=93;NUMALT=2;ODDS=2.08129;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=163966,27259;QR=108;RO=3;RPL=6,1;RPP=10037.5,1651.17;RPPR=9.52472;RPR=4639,762;RUN=1,1;SAF=4643,763;SAP=10072.1,1659.84;SAR=2,0;SRF=2;SRP=3.73412;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:23:0,18,5:0:0:18,5:647,180:-67.8303,-15.0469,-9.62837,-53.1431,0,-51.638	1/2:111:0,59,48:0:0:59,48:2062,1709:-307.042,-139.308,-121.547,-167.751,0,-153.301	1/2:25:0,6,19:0:0:6,19:216,684:-73.7953,-56.1708,-54.3646,-17.9843,0,-12.2648	1/1:90:0,90,0:0:0:90,0:3192,0:-287.504,-27.0927,0,-287.504,-27.0927,-287.504	1/1:22:0,22,0:0:0:22,0:779,0:-70.4328,-6.62266,0,-70.4328,-6.62266,-70.4328	1/1:22:0,22,0:0:0:22,0:781,0:-70.6049,-6.62266,0,-70.6049,-6.62266,-70.6049	1/1:58:0,57,0:0:0:57,0:2009,0:-180.831,-17.1587,0,-180.831,-17.1587,-180.831	1/1:41:0,41,0:0:0:41,0:1429,0:-128.902,-12.3422,0,-128.902,-12.3422,-128.902	1/1:29:0,29,0:0:0:29,0:1023,0:-92.3815,-8.72987,0,-92.3815,-8.72987,-92.3815	1/2:78:0,29,49:0:0:29,49:1022,1760:-227.139,-143.933,-135.204,-83.56,0,-68.8096	1/1:52:0,52,0:0:0:52,0:1845,0:-166.329,-15.6536,0,-166.329,-15.6536,-166.329	1/1:69:0,69,0:0:0:69,0:2451,0:-220.845,-20.7711,0,-220.845,-20.7711,-220.845	1/2:79:0,36,43:0:0:36,43:1274,1518:-227.739,-123.967,-113.13,-104.125,0,-91.1807	1/1:92:0,92,0:0:0:92,0:3272,0:-294.7,-27.6948,0,-294.7,-27.6948,-294.7	1/1:69:0,69,0:0:0:69,0:2459,0:-221.565,-20.7711,0,-221.565,-20.7711,-221.565	1/1:48:0,48,0:0:0:48,0:1704,0:-153.646,-14.4494,0,-153.646,-14.4494,-153.646	1/1:77:0,77,0:0:0:77,0:2731,0:-246.034,-23.1793,0,-246.034,-23.1793,-246.034	1/1:59:0,59,0:0:0:59,0:2098,0:-189.09,-17.7608,0,-189.09,-17.7608,-189.09	1/2:30:0,13,17:0:0:13,17:465,612:-88.2121,-50.2959,-46.3825,-38.2747,0,-33.1572	1/1:92:0,92,0:0:0:92,0:3245,0:-292.082,-27.6948,0,-292.082,-27.6948,-292.082	1/1:116:0,116,0:0:0:116,0:4079,0:-367.224,-34.9195,0,-367.224,-34.9195,-367.224	1/1:35:0,35,0:0:0:35,0:1227,0:-110.733,-10.5361,0,-110.733,-10.5361,-110.733	1/1:45:0,45,0:0:0:45,0:1610,0:-145.19,-13.5464,0,-145.19,-13.5464,-145.19	1/1:41:0,41,0:0:0:41,0:1456,0:-131.336,-12.3422,0,-131.336,-12.3422,-131.336	1/1:30:0,29,0:0:0:29,0:1008,0:-90.7565,-8.72987,0,-90.7565,-8.72987,-90.7565	1/2:102:0,46,55:0:0:46,55:1626,1949:-291.204,-158.777,-144.93,-132.431,0,-115.874	1/1:100:0,100,0:0:0:100,0:3518,0:-316.813,-30.103,0,-316.813,-30.103,-316.813	1/1:46:1,45,0:1:36:45,0:1590,0:-139.869,-10.3264,0,-140.17,-13.5464,-143.038	1/1:123:0,122,0:0:0:122,0:4288,0:-385.743,-36.7257,0,-385.743,-36.7257,-385.743	1/1:107:0,107,0:0:0:107,0:3768,0:-339.323,-32.2102,0,-339.323,-32.2102,-339.323	1/1:62:0,62,0:0:0:62,0:2162,0:-194.526,-18.6639,0,-194.526,-18.6639,-194.526	1/2:7:0,2,5:0:0:2,5:67,180:-20.4657,-15.0469,-14.4449,-5.76078,0,-4.25563	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:2:0,2,0:0:0:2,0:71,0:-6.74206,-0.60206,0,-6.74206,-0.60206,-6.74206	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:206:0,205,0:0:0:205,0:7278,0:-654.776,-61.7112,0,-654.776,-61.7112,-654.776	1/1:101:0,101,0:0:0:101,0:3551,0:-319.799,-30.404,0,-319.799,-30.404,-319.799	1/2:56:1,28,27:1:36:28,27:992,968:-156.512,-76.0041,-70.5128,-77.8677,0,-72.6775	.:.:.:.:.:.:.:.	1/2:78:0,51,27:0:0:51,27:1772,972:-223.72,-79.6701,-64.3176,-144.406,0,-136.278	1/2:29:0,12,17:0:0:12,17:426,612:-85.004,-50.2959,-46.6836,-35.065,0,-29.9475	1/1:39:0,39,0:0:0:39,0:1372,0:-123.777,-11.7402,0,-123.777,-11.7402,-123.777	1/1:87:0,86,0:0:0:86,0:3038,0:-273.29,-25.8886,0,-273.29,-25.8886,-273.29	1/1:58:0,58,0:0:0:58,0:2043,0:-184.14,-17.4597,0,-184.14,-17.4597,-184.14	1/1:67:0,67,0:0:0:67,0:2365,0:-213.107,-20.169,0,-213.107,-20.169,-213.107	1/1:55:0,52,0:0:0:52,0:1811,0:-162.931,-15.6536,0,-162.931,-15.6536,-162.931	1/1:83:0,79,0:0:0:79,0:2794,0:-251.344,-23.7814,0,-251.344,-23.7814,-251.344	1/1:40:0,40,0:0:0:40,0:1373,0:-123.863,-12.0412,0,-123.863,-12.0412,-123.863	1/2:63:0,37,26:0:0:37,26:1325,923:-183.618,-75.56,-64.4219,-108.414,0,-100.588	1/1:17:0,16,1:0:0:16,1:563,36:-50.6398,-4.81648,0,-47.7019,-1.51924,-47.4009	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:53:0,26,26:0:0:26,26:906,928:-149.454,-75.7768,-67.95,-73.793,0,-65.9662	1/1:28:0,28,0:0:0:28,0:994,0:-89.7743,-8.42884,0,-89.7743,-8.42884,-89.7743	1/1:13:0,12,0:0:0:12,0:428,0:-38.6008,-3.61236,0,-38.6008,-3.61236,-38.6008	1/2:68:0,37,30:0:0:37,30:1283,1080:-192.399,-88.123,-76.9849,-104.271,0,-95.24	1/2:12:0,5,7:0:0:5,7:169,248:-34.2497,-20.557,-19.0518,-14.0374,0,-11.9302	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.1072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chr03	21115860	.	A	G	12627.8	PASS	AB=0.524075;ABP=10.2248;AC=24;AF=0.129032;AN=186;AO=758;CIGAR=1X;DP=5296;DPB=5296;DPRA=1.02492;EPP=1640.31;EPPR=9833.27;GTI=0;LEN=1;MEANALT=1;MQM=59.9393;MQMR=59.953;NS=93;NUMALT=1;ODDS=1.0336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27028;QR=161968;RO=4535;RPL=758;RPP=1648.99;RPPR=9850.64;RPR=0;RUN=1;SAF=757;SAP=1640.31;SAR=1;SRF=4533;SRP=9833.27;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	0/1:109:57,52:57:2021:52:1817:-130.994,0,-149.347	0/1:24:6,18:6:216:18:644:-51.0659,0,-12.5658	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.424	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.359	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.177	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:78:29,49:29:1036:49:1749:-134.213,0,-70.0712	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/1:76:32,44:32:1148:44:1576:-119.253,0,-80.7516	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:69:68,1:68:2439:1:36:0,-17.1728,-216.166	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:30:13,17:13:464:17:608:-46.0211,0,-33.0666	0/0:88:88,0:88:3119:0:0:0,-26.4906,-280.743	0/0:112:112,0:112:4001:0:0:0,-33.7154,-360.141	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:100:46,54:46:1652:54:1932:-144.054,0,-118.865	0/0:98:96,0:96:3423:0:0:0,-28.8989,-307.868	0/0:45:44,1:44:1576:1:36:0,-10.0253,-138.611	0/0:118:118,0:118:4198:0:0:0,-35.5215,-378	0/0:103:103,0:103:3669:0:0:0,-31.0061,-330.413	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.835	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:200:200,0:200:7140:0:0:0,-60.206,-642.658	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.433	0/1:56:29,27:29:1044:27:954:-69.3146,0,-77.4171	.:.:.:.:.:.:.:.	0/1:77:50,27:50:1773:27:964:-63.8975,0,-136.672	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/0:84:84,0:84:3009:0:0:0,-25.2865,-271.039	0/0:59:59,0:59:2099:0:0:0,-17.7608,-189.179	0/0:65:65,0:65:2313:0:0:0,-19.5669,-208.424	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:77:77,0:77:2749:0:0:0,-23.1793,-247.651	0/0:39:39,0:39:1362:0:0:0,-11.7402,-122.872	0/1:63:36,27:36:1296:27:957:-67.479,0,-97.979	0/0:17:16,1:16:572:1:36:0,-1.51923,-48.2152	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:53:26,27:26:924:27:950:-69.8583,0,-67.5231	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/1:66:37,29:37:1328:29:1027:-72.8696,0,-99.9497	0/1:12:5,7:5:161:7:252:-19.4166,0,-11.1942	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/0:106:104,2:104:3704:2:72:0,-25.0725,-326.711	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:133:133,0:133:4760:0:0:0,-40.037,-428.428	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.083	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.714	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:43:13,30:13:468:30:1080:-84.569,0,-29.5154	0/0:12:11,1:11:392:1:36:0,-0.0140849,-32.0218	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/0:77:77,0:77:2733:0:0:0,-23.1793,-246.212	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:70:69,0:69:2452:0:0:0,-20.7711,-220.573	0/0:55:54,1:54:1927:1:36:0,-12.9584,-170.108	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:58:30,28:30:1065:28:995:-72.4043,0,-78.7	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:86:86,0:86:3060:0:0:0,-25.8886,-275.542	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/1:53:28,25:28:1008:25:888:-64.2844,0,-75.0818	0/1:99:47,52:47:1675:52:1855:-137.427,0,-121.235	0/1:141:69,72:69:2468:72:2580:-190.004,0,-179.926	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/0:69:69,0:69:2449:0:0:0,-20.7711,-220.656	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:44:18,26:18:648:26:932:-70.9535,0,-45.4066	0/1:99:47,52:47:1683:52:1864:-138.237,0,-121.954	0/1:79:25,54:25:892:54:1928:-150.015,0,-56.8183	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/0:124:124,0:124:4421:0:0:0,-37.3277,-398.062
chr03	21210693	.	T	C	25928.3	PASS	AB=0.535604;ABP=31.4613;AC=24;AF=0.129032;AN=186;AO=1402;CIGAR=1X;DP=7845;DPB=7845;DPRA=1.56368;EPP=2461.95;EPPR=10838.9;GTI=2;LEN=1;MEANALT=1.11111;MQM=59.9943;MQMR=59.9873;NS=93;NUMALT=1;ODDS=1.38698;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49997;QR=230234;RO=6438;RPL=71;RPP=2461.95;RPPR=10831.2;RPR=1331;RUN=1;SAF=0;SAP=3047.41;SAR=1402;SRF=1;SRP=13974.3;SRR=6437;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/1:49:18,31:18:648:31:1116:-86.0012,0,-43.9014	0/1:250:126,124:126:4480:124:4436:-324.151,0,-328.113	0/0:192:192,0:192:6845:0:0:0,-57.7978,-616.122	0/0:35:34,1:34:1220:1:36:0,-6.93777,-106.509	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:70:69,1:69:2459:1:36:0,-17.4738,-217.966	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.604	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:58:31,27:31:1108:27:957:-68.9841,0,-82.5713	0/0:106:104,2:104:3706:2:68:0,-25.4515,-327.284	0/0:127:127,0:127:4553:0:0:0,-38.2308,-409.934	0/1:67:38,29:38:1360:29:1036:-73.3849,0,-102.532	0/0:93:93,0:93:3319:0:0:0,-27.9958,-298.928	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.689	0/0:136:134,2:134:4816:2:72:0,-34.1034,-426.756	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:49:32,17:32:1135:17:603:-39.849,0,-87.7076	0/0:102:102,0:102:3643:0:0:0,-30.7051,-328.075	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.792	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:38:38,0:38:1337:0:0:0,-11.4391,-120.628	0/1:149:76,73:76:2700:73:2579:-187.503,0,-198.389	0/0:153:152,1:152:5440:1:36:0,-42.4593,-486.131	0/0:28:28,0:28:986:0:0:0,-8.42884,-89.0522	0/0:162:162,0:162:5802:0:0:0,-48.7669,-522.292	0/0:140:135,5:135:4840:5:172:0,-26.3262,-419.935	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.53	0/1:15:3,12:3:104:12:432:-34.7057,0,-5.16819	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.2417	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:223:223,0:223:7992:0:0:0,-67.1297,-719.3	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/1:73:40,33:40:1432:33:1176:-84.1726,0,-107.202	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:98:45,53:45:1612:53:1892:-141.057,0,-115.869	0/1:57:28,29:28:985:29:1040:-76.7557,0,-71.8028	0/0:119:118,1:118:4213:1:32:0,-32.6233,-376.146	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.425	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:77:77,0:77:2742:0:0:0,-23.1793,-247.022	0/0:74:74,0:74:2638:0:0:0,-22.2762,-237.666	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/1:151:62,89:62:2228:89:3180:-240.969,0,-155.328	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:186:93,93:93:3340:93:3339:-244.734,0,-244.825	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.618	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:196:84,111:84:3011:111:3921:-294.065,0,-212.199	0/1:30:14,16:14:500:16:561:-41.7862,0,-36.3053	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:106:105,1:105:3756:1:36:0,-28.3109,-334.642	.:.:.:.:.:.:.:.	0/0:172:170,1:170:6060:1:36:0,-48.2377,-541.905	0/0:142:141,0:141:5056:0:0:0,-42.4452,-454.824	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.939	0/1:277:90,187:90:3220:187:6690:-518.789,0,-205.781	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:131:131,0:131:4695:0:0:0,-39.4349,-422.709	0/0:133:133,0:133:4735:0:0:0,-40.037,-426.308	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:152:152,0:152:5403:0:0:0,-45.7566,-486.402	0/1:83:42,41:42:1496:41:1472:-107.791,0,-109.949	0/1:113:45,68:45:1600:68:2427:-184.669,0,-110.274	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:72:71,1:71:2539:1:36:0,-18.0759,-225.162	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:99:47,52:47:1688:52:1872:-138.957,0,-122.405	0/1:54:33,21:33:1180:21:747:-51.2987,0,-90.2524	0/1:149:80,68:80:2872:68:2422:-173.47,0,-213.952	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:103:103,0:103:3699:0:0:0,-31.0061,-333.11	0/0:98:97,1:97:3476:1:36:0,-25.9027,-309.453	0/1:91:43,47:43:1540:47:1671:-123.371,0,-111.587	0/1:179:94,85:94:3384:85:3019:-218.057,0,-250.89	0/1:88:22,66:22:792:66:2353:-185.538,0,-45.115	0/0:107:106,1:106:3788:1:32:0,-29.0109,-337.92	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382
chr03	21258759	.	G	A	118989	PASS	AB=0.451081;ABP=39.5523;AC=162;AF=0.870968;AN=186;AO=5303;CIGAR=1X;DP=6274;DPB=6274;DPRA=0;EPP=11105.2;EPPR=1959.93;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9893;MQMR=60;NS=93;NUMALT=1;ODDS=1.18807;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189095;QR=34459;RO=968;RPL=5256;RPP=11113.7;RPPR=1968.32;RPR=47;RUN=1;SAF=1;SAP=11509.6;SAR=5302;SRF=1;SRP=2096.32;SRR=967;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:16,10:16:563:10:360:-24.9175,0,-43.1724	0/1:50:37,13:37:1310:13:464:-27.046,0,-103.149	0/1:106:57,49:57:2019:49:1760:-126.775,0,-150.073	1/1:179:0,179:0:0:179:6358:-572.312,-53.8844,0	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	1/1:18:0,18:0:0:18:629:-56.9338,-5.41854,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:76:0,76:0:0:76:2727:-245.672,-22.8783,0	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	0/1:64:25,39:25:879:39:1391:-106.222,0,-60.1609	1/1:67:0,67:0:0:67:2379:-214.368,-20.169,0	1/1:80:0,80:0:0:80:2880:-259.436,-24.0824,0	0/1:89:49,40:49:1760:40:1440:-103.106,0,-131.892	1/1:69:0,69:0:0:69:2450:-220.753,-20.7711,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:55:0,55:0:0:55:1967:-177.304,-16.5567,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:29:2,27:2:72:27:957:-79.6071,-1.89315,0	0/1:20:9,11:9:324:11:392:-29.5995,0,-23.4853	1/1:121:0,121:0:0:121:4327:-389.606,-36.4246,0	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0	1/1:80:0,80:0:0:80:2856:-257.278,-24.0824,0	1/1:83:0,83:0:0:83:2937:-264.565,-24.9855,0	1/1:43:0,43:0:0:43:1532:-138.173,-12.9443,0	1/1:46:0,46:0:0:46:1643:-148.157,-13.8474,0	0/1:189:86,103:86:3084:103:3654:-272.168,0,-220.893	1/1:179:0,179:0:0:179:6371:-573.478,-53.8844,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:193:0,193:0:0:193:6889:-620.078,-58.0988,0	1/1:97:0,97:0:0:97:3468:-312.332,-29.1999,0	1/1:91:0,91:0:0:91:3216:-289.664,-27.3937,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:161:0,160:0:0:160:5707:-513.39,-48.1648,0	1/1:86:0,86:0:0:86:3056:-275.267,-25.8886,0	0/1:70:29,41:29:1040:41:1455:-110.173,0,-72.8423	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:116:47,68:47:1676:68:2421:-183.166,0,-116.149	0/1:34:16,18:16:572:18:648:-48.4169,0,-41.5784	1/1:80:0,80:0:0:80:2853:-257.007,-24.0824,0	1/1:34:0,33:0:0:33:1179:-106.058,-9.93399,0	1/1:43:0,43:0:0:43:1525:-137.541,-12.9443,0	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	1/1:81:0,81:0:0:81:2898:-261.054,-24.3834,0	1/1:147:0,147:0:0:147:5225:-470.388,-44.2514,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:75:52,23:52:1856:23:811:-50.7327,0,-144.743	1/1:81:0,81:0:0:81:2882:-259.617,-24.3834,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:86:52,34:52:1827:34:1201:-82.5051,0,-138.819	1/1:50:0,50:0:0:50:1778:-160.301,-15.0515,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:105:70,35:70:2503:35:1244:-80.6565,0,-193.914	0/1:28:19,9:19:680:9:320:-20.7135,0,-53.1003	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:100:0,100:0:0:100:3575:-321.957,-30.103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:98:0,98:0:0:98:3512:-316.252,-29.5009,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:44:0,44:0:0:44:1554:-140.151,-13.2453,0	1/1:50:1,49:1:36:49:1733:-152.654,-11.4532,0	1/1:69:0,69:0:0:69:2453:-221.024,-20.7711,0	0/1:128:94,34:94:3351:34:1220:-71.575,0,-263.276	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:97:0,97:0:0:97:3434:-309.273,-29.1999,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:87:0,87:0:0:87:3108:-279.948,-26.1896,0	1/1:134:0,134:0:0:134:4796:-431.796,-40.338,0	0/1:58:36,22:36:1292:22:782:-53.2428,0,-99.124	0/1:59:36,23:36:1277:23:824:-56.7225,0,-97.4703	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:59:0,59:0:0:59:2107:-189.899,-17.7608,0	1/1:83:0,83:0:0:83:2971:-267.622,-24.9855,0	1/1:132:0,132:0:0:132:4659:-419.47,-39.736,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:72:35,37:35:1256:37:1322:-97.6069,0,-91.6711	0/1:24:15,9:15:531:9:324:-22.2811,0,-40.8972	0/1:100:53,47:53:1896:47:1667:-120.212,0,-140.815	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:68:0,68:0:0:68:2419:-217.966,-20.47,0	1/1:78:0,78:0:0:78:2803:-252.481,-23.4803,0	0/1:61:29,32:29:1012:32:1152:-85.6273,0,-73.0257	0/1:131:57,74:57:2009:74:2647:-199.041,0,-141.644	0/1:65:44,21:44:1562:21:748:-48.0783,0,-121.303	1/1:109:0,109:0:0:109:3880:-349.394,-32.8123,0	1/1:86:1,85:1:36:85:3000:-266.631,-22.2903,0
chr03	21269154	.	ACCC	ACCT,GCCT	415958	PASS	AB=0.497471,0.496371;ABP=3.26293,3.53036;AC=164,24;AF=0.87234,0.12766;AN=188;AO=12630,2288;CIGAR=3M1X,1X2M1X;DP=15001;DPB=15002.8;DPRA=0,1.34433;EPP=27420,4971.34;EPPR=44.2683;GTI=2;LEN=1,4;MEANALT=2.09574,3;MQM=59.986,59.9712;MQMR=60;NS=94;NUMALT=2;ODDS=3.51562;PAIRED=0,0;PAIREDR=0;PAO=3,4;PQA=106,142;PQR=0;PRO=2;QA=450485,79976;QR=664;RO=19;RPL=5600,985;RPP=354.589,98.9841;RPPR=3.12459;RPR=7030,1303;RUN=1,1;SAF=5601,985;SAP=353.607,98.9841;SAR=7029,1303;SRF=10;SRP=3.12459;SRR=9;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:92:0,43,49:0:0:43,49:1544,1702:-264.661,-138.706,-125.761,-126.309,0,-111.558	1/2:246:0,128,115:0:0:128,115:4579,4047:-702.866,-329.48,-290.948,-373.417,0,-338.798	1/2:409:1,198,208:1:35:198,208:7059,7240:-1161.02,-585.919,-529.163,-572.609,0,-512.842	1/1:239:0,237,0:0:0:237,0:8459,0:-760.982,-71.3441,0,-760.982,-71.3441,-760.982	1/1:95:0,95,0:0:0:95,0:3369,0:-303.427,-28.5979,0,-303.427,-28.5979,-303.427	1/1:53:0,53,0:0:0:53,0:1875,0:-169.026,-15.9546,0,-169.026,-15.9546,-169.026	1/1:181:1,179,0:1:36:179,0:6322,0:-565.511,-50.912,0,-565.812,-53.8844,-568.75	1/1:293:0,293,0:0:0:293,0:10467,0:-941.95,-88.2018,0,-941.95,-88.2018,-941.95	1/1:189:0,188,0:0:0:188,0:6728,0:-605.295,-56.5936,0,-605.295,-56.5936,-605.295	1/2:168:0,87,81:0:0:87,81:3109,2830:-484.05,-230.557,-204.367,-253.846,0,-229.462	1/1:166:1,162,1:1:36:162,1:5781,36:-516.85,-45.8145,0,-514.214,-45.8145,-516.85	1/1:185:0,184,1:0:0:184,1:6520,35:-586.535,-55.3895,0,-583.687,-52.1919,-583.386	1/2:149:1,92,56:1:36:92,56:3280,1938:-421.609,-154.536,-129.779,-264.426,0,-250.506	1/1:201:0,200,0:0:0:200,0:7138,0:-642.268,-60.206,0,-642.268,-60.206,-642.268	1/1:161:0,161,0:0:0:161,0:5723,0:-515.187,-48.4658,0,-515.187,-48.4658,-515.187	1/1:141:0,140,0:0:0:140,0:4990,0:-448.998,-42.1442,0,-448.998,-42.1442,-448.998	1/1:169:0,168,0:0:0:168,0:5988,0:-538.726,-50.573,0,-538.726,-50.573,-538.726	1/1:115:1,114,0:1:36:114,0:4046,0:-360.724,-31.0202,0,-361.025,-34.3174,-363.963	1/2:106:1,52,53:1:32:52,53:1833,1819:-294.08,-145.134,-132.058,-146.697,0,-133.32	1/1:260:0,259,0:0:0:259,0:9243,0:-831.48,-77.9668,0,-831.48,-77.9668,-831.48	1/1:234:0,232,0:0:0:232,0:8272,0:-744.187,-69.839,0,-744.187,-69.839,-744.187	1/1:76:0,75,0:0:0:75,0:2692,0:-242.31,-22.5773,0,-242.31,-22.5773,-242.31	1/1:114:4,110,0:4:143:110,0:3932,0:-340.849,-21.096,0,-342.053,-33.1133,-353.713	1/1:151:0,149,1:0:0:149,1:5287,35:-475.687,-44.8535,0,-472.839,-41.9358,-472.538	1/1:107:0,105,1:0:0:105,1:3750,36:-337.369,-31.6082,0,-334.432,-28.6408,-334.131	1/2:305:1,151,152:1:36:151,152:5365,5342:-868.779,-431.903,-389.385,-434.267,0,-391.448	1/1:450:0,450,0:0:0:450,0:16038,0:-1443.11,-135.464,0,-1443.11,-135.464,-1443.11	1/1:80:0,80,0:0:0:80,0:2822,0:-254.147,-24.0824,0,-254.147,-24.0824,-254.147	1/1:312:0,307,1:0:0:307,1:10976,36:-987.358,-92.4162,0,-984.421,-89.4658,-984.12	1/1:178:0,173,4:0:0:173,4:6160,142:-554.144,-52.0782,0,-542.574,-40.5119,-541.37	1/1:126:0,126,0:0:0:126,0:4466,0:-402.111,-37.9298,0,-402.111,-37.9298,-402.111	1/2:7:0,2,5:0:0:2,5:72,174:-20.3748,-14.4965,-13.8945,-6.23466,0,-4.72951	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/1:22:0,22,0:0:0:22,0:780,0:-70.523,-6.62266,0,-70.523,-6.62266,-70.523	1/1:404:1,402,0:1:36:402,0:14324,0:-1285.32,-118.077,0,-1285.62,-121.014,-1288.56	1/1:158:0,158,0:0:0:158,0:5653,0:-508.888,-47.5627,0,-508.888,-47.5627,-508.888	1/2:173:0,74,98:0:0:74,98:2643,3464:-497.6,-282.115,-259.839,-215.48,0,-185.979	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:426:0,201,222:0:0:201,222:7168,7748:-1214.54,-630.22,-569.713,-584.345,0,-517.516	1/2:67:0,39,28:0:0:39,28:1383,990:-193.659,-80.9852,-69.245,-113.028,0,-104.599	1/1:205:0,205,0:0:0:205,0:7328,0:-659.525,-61.7112,0,-659.525,-61.7112,-659.525	1/1:122:0,121,0:0:0:121,0:4340,0:-390.415,-36.4246,0,-390.415,-36.4246,-390.415	1/1:147:0,147,0:0:0:147,0:5169,0:-465.349,-44.2514,0,-465.349,-44.2514,-465.349	1/1:132:0,132,0:0:0:132,0:4732,0:-426.038,-39.736,0,-426.038,-39.736,-426.038	1/1:168:0,166,0:0:0:166,0:5948,0:-535.112,-49.971,0,-535.112,-49.971,-535.112	1/1:202:0,202,0:0:0:202,0:7222,0:-650.034,-60.8081,0,-650.034,-60.8081,-650.034	1/1:140:0,137,1:0:0:137,1:4905,36:-441.3,-41.2411,0,-438.363,-38.2737,-438.062	1/2:258:0,135,122:0:0:135,122:4812,4294:-741.798,-349.556,-308.917,-392.237,0,-355.511	1/1:169:0,169,0:0:0:169,0:6017,0:-541.634,-50.8741,0,-541.634,-50.8741,-541.634	1/1:15:0,15,0:0:0:15,0:527,0:-47.7602,-4.51545,0,-47.7602,-4.51545,-47.7602	1/2:213:0,114,98:0:0:114,98:4070,3424:-610.153,-278.338,-244.021,-331.63,0,-302.129	1/1:43:0,42,1:0:0:42,1:1495,36:-134.484,-12.6433,0,-131.547,-9.34602,-131.246	1/1:29:0,27,0:0:0:27,0:972,0:-87.5078,-8.12781,0,-87.5078,-8.12781,-87.5078	1/2:186:0,95,90:0:0:95,90:3380,3122:-529.284,-253.816,-225.219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chr03	21557370	.	AAC	AGA,AGC	160946	PASS	AB=0.336919,0.660776;ABP=604.316,587.438;AC=164,24;AF=0.87234,0.12766;AN=188;AO=5277,1736;CIGAR=1M2X,1M1X1M;DP=7034;DPB=7048.33;DPRA=0,1.66469;EPP=11461.9,3772.69;EPPR=7.35324;GTI=10;LEN=2,1;MEANALT=1.53191,2.18182;MQM=59.5492,59.9775;MQMR=60;NS=94;NUMALT=2;ODDS=9317.37;PAIRED=0,0;PAIREDR=0;PAO=21,0;PQA=742,0;PQR=0;PRO=0;QA=186845,61263;QR=72;RO=2;RPL=5277,864;RPP=11461.9,3.09035;RPPR=3.0103;RPR=0,872;RUN=1,1;SAF=5277,864;SAP=11461.9,3.09035;SAR=0,872;SRF=1;SRP=3.0103;SRR=1;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,13,11:0:0:13,11:464,396:-70.382,-32.562,-28.6486,-38.0733,0,-34.7619	1/2:73:0,36,37:0:0:36,37:1281,1308:-211.095,-106.705,-95.8679,-104.572,0,-93.4335	1/2:112:0,56,56:0:0:56,56:1971,1973:-321.359,-160.924,-144.066,-160.728,0,-143.871	1/1:95:0,94,1:0:0:94,1:3365,36:-302.696,-28.2968,0,-299.758,-24.9996,-299.457	1/1:24:0,24,0:0:0:24,0:857,0:-77.4504,-7.22472,0,-77.4504,-7.22472,-77.4504	1/1:25:0,25,0:0:0:25,0:876,0:-78.9802,-7.52575,0,-78.9802,-7.52575,-78.9802	1/1:40:0,40,0:0:0:40,0:1411,0:-127.276,-12.0412,0,-127.276,-12.0412,-127.276	1/1:118:0,118,0:0:0:118,0:4153,0:-373.848,-35.5215,0,-373.848,-35.5215,-373.848	1/1:36:0,36,0:0:0:36,0:1254,0:-112.739,-10.8371,0,-112.739,-10.8371,-112.739	1/2:154:0,29,125:0:0:29,125:1019,4353:-437.2,-354.26,-345.53,-83.2325,0,-45.6037	1/1:74:0,74,0:0:0:74,0:2589,0:-233.117,-22.2762,0,-233.117,-22.2762,-233.117	1/1:91:0,91,0:0:0:91,0:3223,0:-290.205,-27.3937,0,-290.205,-27.3937,-290.205	1/2:38:0,21,16:0:0:21,16:756,576:-108.666,-46.9987,-40.677,-61.6672,0,-56.8507	1/1:84:0,84,0:0:0:84,0:2988,0:-269.136,-25.2865,0,-269.136,-25.2865,-269.136	1/1:33:0,33,0:0:0:33,0:1163,0:-104.967,-9.93399,0,-104.967,-9.93399,-104.967	1/1:62:0,57,5:0:0:57,5:2032,180:-182.76,-17.1587,0,-168.073,-2.15994,-166.567	1/1:29:0,29,0:0:0:29,0:1029,0:-92.8247,-8.72987,0,-92.8247,-8.72987,-92.8247	1/1:28:0,28,0:0:0:28,0:1002,0:-90.4959,-8.42884,0,-90.4959,-8.42884,-90.4959	1/2:38:0,22,15:0:0:22,15:762,540:-106.114,-44.2021,-37.5795,-62.0446,0,-57.5291	1/1:98:0,98,0:0:0:98,0:3463,0:-311.875,-29.5009,0,-311.875,-29.5009,-311.875	1/1:89:0,89,0:0:0:89,0:3190,0:-287.189,-26.7917,0,-287.189,-26.7917,-287.189	1/1:51:0,51,0:0:0:51,0:1799,0:-162.181,-15.3525,0,-162.181,-15.3525,-162.181	1/1:50:0,50,0:0:0:50,0:1770,0:-159.577,-15.0515,0,-159.577,-15.0515,-159.577	1/1:24:0,24,0:0:0:24,0:862,0:-77.9,-7.22472,0,-77.9,-7.22472,-77.9	1/1:81:0,80,1:0:0:80,1:2827,36:-254.272,-24.0824,0,-251.335,-20.7852,-251.034	1/2:357:0,70,287:0:0:70,287:2466,10096:-1022.95,-822.191,-801.119,-201.112,0,-114.716	1/1:135:0,134,0:0:0:134,0:4736,0:-425.871,-40.338,0,-425.871,-40.338,-425.871	1/1:28:0,28,0:0:0:28,0:1002,0:-90.4821,-8.42884,0,-90.4821,-8.42884,-90.4821	1/1:110:0,109,0:0:0:109,0:3855,0:-346.78,-32.8123,0,-346.78,-32.8123,-346.78	1/1:69:0,69,0:0:0:69,0:2439,0:-219.75,-20.7711,0,-219.75,-20.7711,-219.75	1/1:84:0,84,0:0:0:84,0:2962,0:-266.782,-25.2865,0,-266.782,-25.2865,-266.782	1/2:24:0,17,7:0:0:17,7:610,252:-70.6199,-20.8702,-15.7527,-50.0587,0,-47.9515	1/1:13:0,12,1:0:0:12,1:432,36:-38.8614,-3.61236,0,-35.924,-0.315115,-35.6229	1/1:10:0,10,0:0:0:10,0:360,0:-32.6902,-3.0103,0,-32.6902,-3.0103,-32.6902	1/1:18:0,18,0:0:0:18,0:618,0:-55.872,-5.41854,0,-55.872,-5.41854,-55.872	1/1:32:0,29,0:0:0:29,0:1042,0:-93.7076,-8.72987,0,-93.7076,-8.72987,-93.7076	1/1:132:0,131,0:0:0:131,0:4631,0:-416.576,-39.4349,0,-416.576,-39.4349,-416.576	1/1:112:0,112,0:0:0:112,0:3949,0:-354.403,-33.7154,0,-354.403,-33.7154,-354.403	1/2:64:0,29,34:0:0:29,34:1036,1194:-181.589,-97.1666,-88.4368,-84.4171,0,-74.1821	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:100:0,32,68:0:0:32,68:1150,2411:-290.595,-196.776,-187.143,-94.1771,0,-73.7071	1/2:43:0,15,28:0:0:15,28:534,987:-124.237,-80.7142,-76.1987,-43.8779,0,-35.4491	1/1:138:0,137,0:0:0:137,0:4840,0:-435.33,-41.2411,0,-435.33,-41.2411,-435.33	1/1:46:0,46,0:0:0:46,0:1613,0:-145.449,-13.8474,0,-145.449,-13.8474,-145.449	1/1:34:0,34,0:0:0:34,0:1209,0:-108.887,-10.235,0,-108.887,-10.235,-108.887	1/1:86:0,86,0:0:0:86,0:3046,0:-274.365,-25.8886,0,-274.365,-25.8886,-274.365	1/1:80:0,80,0:0:0:80,0:2844,0:-256.125,-24.0824,0,-256.125,-24.0824,-256.125	1/1:109:0,107,2:0:0:107,2:3831,72:-344.624,-32.2102,0,-338.749,-25.9755,-338.147	1/1:68:1,67,0:1:36:67,0:2344,0:-207.615,-16.8718,0,-207.916,-20.169,-210.853	1/2:185:0,65,120:0:0:65,120:2289,4238:-531.821,-345.477,-325.911,-186.696,0,-150.572	1/1:58:0,58,0:0:0:58,0:2057,0:-185.379,-17.4597,0,-185.379,-17.4597,-185.379	1/1:22:0,22,0:0:0:22,0:779,0:-70.4195,-6.62266,0,-70.4195,-6.62266,-70.4195	1/2:84:0,45,38:0:0:45,38:1607,1353:-241.026,-110.27,-96.7232,-130.753,0,-119.314	1/1:67:0,67,0:0:0:67,0:2379,0:-214.365,-20.169,0,-214.365,-20.169,-214.365	1/1:13:0,13,0:0:0:13,0:464,0:-42.0977,-3.91339,0,-42.0977,-3.91339,-42.0977	1/2:157:0,62,95:0:0:62,95:2174,3328:-447.628,-270.872,-252.208,-177.105,0,-148.508	1/2:72:0,8,64:0:0:8,64:275,2262:-206.902,-184.576,-182.168,-22.6703,0,-3.40437	1/1:31:0,31,0:0:0:31,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chr03	21632719	.	CAAA	AAAG,CAAG	198923	PASS	AB=0.47501,0.520446;ABP=16.1423,11.8011;AC=164,24;AF=0.87234,0.12766;AN=188;AO=7924,1269;CIGAR=1X2M1X,3M1X;DP=9236;DPB=9236.75;DPRA=0,1.27439;EPP=17201.1,2758.61;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.74468,2.46667;MQM=59.6453,59.9945;MQMR=60;NS=94;NUMALT=2;ODDS=0.647709;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=70,0;PQR=0;PRO=0;QA=277230,44731;QR=36;RO=1;RPL=7924,1269;RPP=17209.8,2758.61;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=1,0;SAP=17201.1,2758.61;SAR=7923,1269;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:51:0,29,22:0:0:29,22:1030,779:-147.738,-63.8094,-55.0795,-84.2835,0,-77.6608	1/2:134:0,59,74:0:0:59,74:2051,2608:-379.072,-212.394,-194.633,-166.727,0,-144.451	1/2:138:0,59,77:0:0:59,77:2045,2716:-387.317,-221.24,-203.479,-166.162,0,-142.983	1/1:194:0,191,0:0:0:191,0:6621,0:-595.564,-57.4967,0,-595.564,-57.4967,-595.564	1/1:71:0,71,0:0:0:71,0:2522,0:-227.222,-21.3731,0,-227.222,-21.3731,-227.222	1/1:59:0,59,0:0:0:59,0:2050,0:-184.733,-17.7608,0,-184.733,-17.7608,-184.733	1/1:150:0,150,0:0:0:150,0:5235,0:-471.271,-45.1545,0,-471.271,-45.1545,-471.271	1/1:117:0,117,0:0:0:117,0:4072,0:-366.603,-35.2205,0,-366.603,-35.2205,-366.603	1/1:86:0,86,0:0:0:86,0:2975,0:-267.982,-25.8886,0,-267.982,-25.8886,-267.982	1/2:84:0,45,39:0:0:45,39:1598,1383:-243.237,-113.028,-99.4815,-130.563,0,-118.823	1/1:55:0,55,0:0:0:55,0:1894,0:-170.665,-16.5567,0,-170.665,-16.5567,-170.665	1/1:78:0,77,0:0:0:77,0:2722,0:-244.724,-23.1793,0,-244.724,-23.1793,-244.724	1/2:77:0,38,39:0:0:38,39:1351,1376:-222.478,-112.398,-100.959,-110.434,0,-98.6934	1/1:83:0,82,0:0:0:82,0:2885,0:-259.612,-24.6845,0,-259.612,-24.6845,-259.612	1/1:67:0,67,0:0:0:67,0:2391,0:-215.428,-20.169,0,-215.428,-20.169,-215.428	1/1:62:0,61,0:0:0:61,0:2133,0:-191.887,-18.3628,0,-191.887,-18.3628,-191.887	1/1:54:0,53,0:0:0:53,0:1856,0:-166.862,-15.9546,0,-166.862,-15.9546,-166.862	1/1:65:0,65,0:0:0:65,0:2294,0:-206.664,-19.567,0,-206.664,-19.567,-206.664	1/2:49:0,23,26:0:0:23,26:826,924:-143.033,-75.6509,-68.7272,-67.7398,0,-59.913	1/1:227:0,226,1:0:0:226,1:7931,36:-713.43,-68.0328,0,-710.493,-64.7355,-710.192	1/1:167:0,165,1:0:0:165,1:5667,36:-509.866,-49.67,0,-506.928,-46.6576,-506.627	1/1:133:0,131,0:0:0:131,0:4568,0:-410.931,-39.4349,0,-410.931,-39.4349,-410.931	1/1:70:0,70,0:0:0:70,0:2428,0:-218.761,-21.0721,0,-218.761,-21.0721,-218.761	1/1:93:0,93,0:0:0:93,0:3263,0:-293.493,-27.9958,0,-293.493,-27.9958,-293.493	1/1:97:0,97,0:0:0:97,0:3402,0:-306.369,-29.1999,0,-306.369,-29.1999,-306.369	1/2:285:0,125,158:0:0:125,158:4352,5552:-805.779,-451.927,-414.298,-353.877,0,-306.314	1/1:187:0,186,1:0:0:186,1:6520,36:-586.486,-55.9916,0,-583.549,-52.6943,-583.248	1/1:37:0,37,0:0:0:37,0:1298,0:-117.109,-11.1381,0,-117.109,-11.1381,-117.109	1/1:334:0,333,0:0:0:333,0:11679,0:-1050.7,-100.243,0,-1050.7,-100.243,-1050.7	1/1:106:0,102,3:0:0:102,3:3561,99:-320.298,-30.7051,0,-312.295,-22.6788,-311.392	1/1:107:0,107,0:0:0:107,0:3723,0:-334.209,-32.2102,0,-334.209,-32.2102,-334.209	1/2:4:0,2,2:0:0:2,2:72,59:-10.9094,-5.00208,-4.40002,-6.23466,0,-5.6326	1/1:8:0,8,0:0:0:8,0:273,0:-24.8935,-2.40824,0,-24.8935,-2.40824,-24.8935	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:8:0,8,0:0:0:8,0:281,0:-25.6124,-2.40824,0,-25.6124,-2.40824,-25.6124	1/1:229:0,229,0:0:0:229,0:8037,0:-723.324,-68.9359,0,-723.324,-68.9359,-723.324	1/1:229:0,228,0:0:0:228,0:7902,0:-710.879,-68.6348,0,-710.879,-68.6348,-710.879	1/2:76:0,46,30:0:0:46,30:1589,1038:-213.777,-84.6967,-70.8493,-129.426,0,-120.395	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:149:0,73,76:0:0:73,76:2566,2648:-424.553,-215.69,-193.714,-209.213,0,-186.335	1/2:36:0,17,19:0:0:17,19:593,663:-102.495,-54.2739,-49.1564,-48.57,0,-42.8504	1/1:132:0,132,0:0:0:132,0:4644,0:-418.111,-39.736,0,-418.111,-39.736,-418.111	1/1:81:0,81,0:0:0:81,0:2829,0:-254.84,-24.3834,0,-254.84,-24.3834,-254.84	1/1:57:0,57,0:0:0:57,0:1978,0:-178.277,-17.1587,0,-178.277,-17.1587,-178.277	1/1:57:0,56,0:0:0:56,0:1953,0:-175.787,-16.8577,0,-175.787,-16.8577,-175.787	1/1:133:0,131,0:0:0:131,0:4606,0:-414.211,-39.4349,0,-414.211,-39.4349,-414.211	1/1:168:0,167,0:0:0:167,0:5828,0:-524.262,-50.272,0,-524.262,-50.272,-524.262	1/1:123:0,123,0:0:0:123,0:4297,0:-386.897,-37.0267,0,-386.897,-37.0267,-386.897	1/2:168:0,76,92:0:0:76,92:2695,3232:-482.964,-263.409,-240.531,-219.907,0,-192.213	1/1:159:0,159,0:0:0:159,0:5563,0:-500.719,-47.8638,0,-500.719,-47.8638,-500.719	1/1:14:0,14,0:0:0:14,0:466,0:-42.2563,-4.21442,0,-42.2563,-4.21442,-42.2563	1/2:156:0,73,83:0:0:73,83:2559,2933:-447.375,-239.221,-217.246,-208.505,0,-183.52	1/1:13:0,12,0:0:0:12,0:431,0:-38.8054,-3.61236,0,-38.8054,-3.61236,-38.8054	1/1:17:0,17,0:0:0:17,0:579,0:-52.0575,-5.11751,0,-52.0575,-5.11751,-52.0575	1/2:143:0,73,69:0:0:73,69:2529,2442:-404.433,-198.905,-176.93,-205.52,0,-184.749	1/2:42:0,16,26:0:0:16,26:545,910:-118.575,-74.3873,-69.5708,-44.532,0,-36.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chr03	21925449	.	C	T	18860.9	PASS	AB=0.473876;ABP=17.646;AC=24;AF=0.129032;AN=186;AO=1181;CIGAR=1X;DP=11437;DPB=11437;DPRA=0.973013;EPP=2567.52;EPPR=22254.1;GTI=1;LEN=1;MEANALT=1.0625;MQM=59.7172;MQMR=59.9473;NS=93;NUMALT=1;ODDS=2.17622;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41931;QR=362921;RO=10251;RPL=0;RPP=2567.52;RPPR=22254.1;RPR=1181;RUN=1;SAF=0;SAP=2567.52;SAR=1181;SRF=0;SRP=22262.8;SRR=10251;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:18,23:18:633:23:824:-62.1411,0,-44.9528	0/1:174:87,87:87:3075:87:3109:-227.646,0,-224.591	0/1:91:49,42:49:1722:42:1508:-108.613,0,-127.859	0/0:299:297,2:297:10488:2:72:0,-83.1712,-937.004	0/0:105:105,0:105:3712:0:0:0,-31.6081,-334.278	0/0:78:78,0:78:2780:0:0:0,-23.4803,-250.442	0/0:122:122,0:122:4337:0:0:0,-36.7257,-389.819	0/0:194:194,0:194:6880:0:0:0,-58.3998,-619.269	0/0:144:144,0:144:5061:0:0:0,-43.3483,-455.633	0/1:148:108,40:108:3826:40:1436:-84.2791,0,-299.984	0/0:71:70,1:70:2473:1:36:0,-17.7749,-219.225	0/0:85:85,0:85:3039:0:0:0,-25.5875,-273.74	0/1:71:37,34:37:1305:34:1193:-86.2757,0,-96.376	0/0:124:124,0:124:4404:0:0:0,-37.3277,-396.534	0/0:77:77,0:77:2714:0:0:0,-23.1793,-244.502	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:88:88,0:88:3147:0:0:0,-26.4906,-283.455	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/1:57:26,31:26:902:31:1078:-80.1574,0,-64.1412	0/0:256:256,0:256:9063:0:0:0,-77.0637,-815.646	0/0:195:195,0:195:6874:0:0:0,-58.7008,-618.724	0/0:200:200,0:200:7079:0:0:0,-60.206,-637.17	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:157:157,0:157:5582:0:0:0,-47.2617,-501.725	0/0:99:97,2:97:3449:2:72:0,-22.9652,-303.783	0/1:281:144,137:144:5089:137:4883:-355.02,0,-373.559	0/0:273:273,0:273:9721:0:0:0,-82.1812,-874.84	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/0:326:325,1:325:11476:1:36:0,-94.5375,-1029.12	0/0:259:257,2:257:9145:2:72:0,-71.13,-816.177	0/0:128:128,0:128:4524:0:0:0,-38.5318,-407.326	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:38:38,0:38:1350:0:0:0,-11.4391,-121.799	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	.:.:.:.:.:.:.:.	0/0:14:14,0:14:471:0:0:0,-4.21442,-42.7088	0/0:242:242,0:242:8552:0:0:0,-72.8493,-769.686	0/0:348:348,0:348:12355:0:0:0,-104.758,-1111.78	0/1:71:32,39:32:1121:39:1388:-103.628,0,-79.8193	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:150:80,70:80:2841:70:2497:-179.801,0,-210.768	0/1:32:17,15:17:603:15:514:-36.9487,0,-44.9665	0/0:147:146,1:146:5143:1:21:0,-42.1515,-460.913	0/0:109:109,0:109:3884:0:0:0,-32.8123,-349.751	0/0:72:72,0:72:2551:0:0:0,-21.6742,-229.838	0/0:108:108,0:108:3784:0:0:0,-32.5112,-340.754	0/0:200:200,0:200:7121:0:0:0,-60.206,-640.949	0/0:319:318,0:318:11250:0:0:0,-95.7275,-1012.18	0/0:183:183,0:183:6477:0:0:0,-55.0885,-582.966	0/1:165:89,76:89:3169:76:2691:-192.74,0,-235.764	0/0:229:229,0:229:8156:0:0:0,-68.9359,-734.025	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:133:80,53:80:2829:53:1900:-131.241,0,-214.809	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:22:22,0:22:760:0:0:0,-6.62266,-68.7042	0/1:106:53,53:53:1856:53:1908:-140.079,0,-135.405	0/1:13:8,5:8:284:5:176:-12.2716,0,-21.99	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7185	0/0:108:107,0:107:3729:0:0:0,-32.2102,-335.451	0/0:126:126,0:126:4451:0:0:0,-37.9298,-400.76	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:281:281,0:281:9893:0:0:0,-84.5894,-890.207	0/0:334:334,0:334:11824:0:0:0,-100.544,-1064.03	0/0:133:133,0:133:4710:0:0:0,-40.037,-424.059	0/0:115:115,0:115:4086:0:0:0,-34.6184,-367.07	0/0:325:324,0:324:11493:0:0:0,-97.5337,-1034.03	0/1:76:31,45:31:1093:45:1593:-120.769,0,-75.7994	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/0:126:126,0:126:4473:0:0:0,-37.9298,-402.738	0/0:100:100,0:100:3559:0:0:0,-30.103,-320.516	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:138:137,1:137:4842:1:36:0,-37.9439,-432.336	0/0:84:84,0:84:2940:0:0:0,-25.2865,-264.234	0/0:104:104,0:104:3645:0:0:0,-31.3071,-328.19	0/0:207:207,0:207:7357:0:0:0,-62.3132,-662.179	0/1:136:70,66:70:2485:66:2331:-169.097,0,-182.856	0/1:152:78,73:78:2784:73:2601:-188.668,0,-205.134	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:157:157,0:157:5527:0:0:0,-47.2617,-497.553	0/0:157:157,0:157:5579:0:0:0,-47.2617,-502.232	0/0:239:239,0:239:8337:0:0:0,-71.9462,-750.341	0/0:100:100,0:100:3508:0:0:0,-30.103,-315.931	0/1:68:27,41:27:942:41:1472:-112.304,0,-64.6198	0/1:95:54,41:54:1917:41:1452:-102.373,0,-144.207	0/1:150:89,60:89:3137:60:2103:-144.314,0,-237.339	0/0:57:56,1:56:2012:1:36:0,-13.5604,-177.755	0/0:89:89,0:89:3145:0:0:0,-26.7917,-283.274	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.978	0/1:58:33,25:33:1172:25:896:-63.4832,0,-88.3244	0/1:97:56,41:56:1956:41:1476:-103.932,0,-147.111	0/1:99:29,70:29:1036:70:2413:-187.617,0,-63.7519	0/0:88:88,0:88:3104:0:0:0,-26.4906,-279.583	0/0:89:89,0:89:3171:0:0:0,-26.7917,-285.615
chr03	21940320	.	G	A,C	88799.4	PASS	AB=0.47463,0.52537;ABP=8.29896,8.29896;AC=164,24;AF=0.87234,0.12766;AN=188;AO=3419,501;CIGAR=1X,1X;DP=3920;DPB=3920;DPRA=0,0.982695;EPP=7280.35,1073.62;EPPR=0;GTI=0;LEN=1,1;MEANALT=1.28723,2;MQM=59.9219,59.998;MQMR=0;NS=94;NUMALT=2;ODDS=4.24129;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=122402,17922;QR=0;RO=0;RPL=17,2;RPP=7280.35,1073.62;RPPR=0;RPR=3402,499;RUN=1,1;SAF=3419,501;SAP=7427.27,1090.92;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:16:0,5,11:0:0:5,11:180,392:-46.9969,-32.3087,-30.8036,-15.0469,0,-11.7356	1/2:59:0,27,32:0:0:27,32:972,1152:-173.667,-94.3572,-86.2294,-79.6701,0,-70.0371	1/2:40:0,19,21:0:0:19,21:672,748:-116.056,-61.3237,-55.6041,-55.0871,0,-48.7655	1/1:80:0,80,0:0:0:80,0:2867,0:-258.267,-24.0824,0,-258.267,-24.0824,-258.267	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/1:27:0,27,0:0:0:27,0:968,0:-87.351,-8.12781,0,-87.351,-8.12781,-87.351	1/1:54:0,54,0:0:0:54,0:1936,0:-174.516,-16.2556,0,-174.516,-16.2556,-174.516	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/1:61:0,61,0:0:0:61,0:2177,0:-196.181,-18.3628,0,-196.181,-18.3628,-196.181	1/2:40:0,25,15:0:0:25,15:900,536:-117.496,-44.0594,-36.5336,-73.7953,0,-69.2798	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/1:29:0,29,0:0:0:29,0:1027,0:-92.7026,-8.72987,0,-92.7026,-8.72987,-92.7026	1/2:33:0,16,17:0:0:16,17:576,608:-96.9343,-49.9345,-45.118,-47.3585,0,-42.241	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/1:22:0,22,0:0:0:22,0:784,0:-70.8839,-6.62266,0,-70.8839,-6.62266,-70.8839	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/1:21:0,21,0:0:0:21,0:741,0:-67.0116,-6.32163,0,-67.0116,-6.32163,-67.0116	1/2:12:0,6,6:0:0:6,6:216,216:-35.6088,-17.9843,-16.1782,-17.9843,0,-16.1782	1/1:153:0,153,0:0:0:153,0:5489,0:-494.133,-46.0576,0,-494.133,-46.0576,-494.133	1/1:54:0,54,0:0:0:54,0:1929,0:-173.85,-16.2556,0,-173.85,-16.2556,-173.85	1/1:69:0,69,0:0:0:69,0:2480,0:-223.453,-20.7711,0,-223.453,-20.7711,-223.453	1/1:38:0,38,0:0:0:38,0:1368,0:-123.376,-11.4391,0,-123.376,-11.4391,-123.376	1/1:39:0,39,0:0:0:39,0:1404,0:-126.659,-11.7402,0,-126.659,-11.7402,-126.659	1/1:36:0,36,0:0:0:36,0:1296,0:-116.944,-10.8371,0,-116.944,-10.8371,-116.944	1/2:129:0,60,69:0:0:60,69:2156,2476:-378.209,-202.322,-184.261,-176.245,0,-155.474	1/1:119:0,119,0:0:0:119,0:4249,0:-382.588,-35.8226,0,-382.588,-35.8226,-382.588	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:119:0,119,0:0:0:119,0:4268,0:-384.295,-35.8226,0,-384.295,-35.8226,-384.295	1/1:45:0,43,2:0:0:43,2:1533,59:-137.948,-12.9443,0,-133.244,-7.94221,-132.642	1/1:61:0,61,0:0:0:61,0:2146,0:-193.405,-18.3628,0,-193.405,-18.3628,-193.405	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:8:0,2,6:0:0:2,6:72,216:-23.8592,-17.9843,-17.3823,-6.23466,0,-4.42848	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:14:0,14,0:0:0:14,0:504,0:-45.6977,-4.21442,0,-45.6977,-4.21442,-45.6977	1/1:92:0,92,0:0:0:92,0:3264,0:-293.974,-27.6948,0,-293.974,-27.6948,-293.974	1/1:106:0,106,0:0:0:106,0:3816,0:-343.627,-31.9092,0,-343.627,-31.9092,-343.627	1/2:13:0,7,6:0:0:7,6:248,216:-38.1841,-17.9843,-15.8771,-20.557,0,-18.7508	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:64:0,34,30:0:0:34,30:1216,1076:-187.275,-88.122,-77.8869,-99.5115,0,-90.4806	1/2:21:0,7,14:0:0:7,14:252,488:-60.6017,-40.036,-37.9288,-20.9217,0,-16.7073	1/1:57:0,57,0:0:0:57,0:2044,0:-184.232,-17.1587,0,-184.232,-17.1587,-184.232	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/1:53:0,53,0:0:0:53,0:1904,0:-171.638,-15.9546,0,-171.638,-15.9546,-171.638	1/1:64:0,64,0:0:0:64,0:2292,0:-206.541,-19.2659,0,-206.541,-19.2659,-206.541	1/1:59:0,59,0:0:0:59,0:2120,0:-191.068,-17.7608,0,-191.068,-17.7608,-191.068	1/1:76:0,76,0:0:0:76,0:2732,0:-246.121,-22.8783,0,-246.121,-22.8783,-246.121	1/2:53:0,18,35:0:0:18,35:629,1260:-154.332,-103.169,-97.7509,-51.5152,0,-40.9792	1/1:118:0,118,0:0:0:118,0:4228,0:-380.68,-35.5215,0,-380.68,-35.5215,-380.68	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:79:0,39,40:0:0:39,40:1389,1428:-229.987,-116.776,-105.036,-113.567,0,-101.526	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:44:0,28,16:0:0:28,16:1004,576:-129.246,-47.3585,-38.9297,-82.247,0,-77.4305	1/2:22:0,14,8:0:0:14,8:499,288:-64.532,-23.8592,-19.6447,-41.0314,0,-38.6231	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9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chr03	21940342	.	CAC	TAT,TAC	84488.2	PASS	AB=0.477848,0.520042;ABP=7.05089,6.3179;AC=164,24;AF=0.87234,0.12766;AN=188;AO=3438,497;CIGAR=1X1M1X,1X2M;DP=3941;DPB=3941.67;DPRA=0,0.980295;EPP=7459.85,1082.23;EPPR=0;GTI=0;LEN=3,1;MEANALT=1.35106,2.07407;MQM=59.8967,59.998;MQMR=0;NS=94;NUMALT=2;ODDS=4.52078;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=0;PRO=0;QA=119006,17768;QR=0;RO=0;RPL=3438,497;RPP=7468.53,1082.23;RPPR=0;RPR=0,0;RUN=1,1;SAF=3437,497;SAP=7459.85,1082.23;SAR=1,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:16:0,5,11:0:0:5,11:167,392:-45.8215,-32.3087,-30.8036,-13.8536,0,-10.5423	1/2:59:0,27,32:0:0:27,32:943,1139:-169.888,-93.1854,-85.0576,-77.055,0,-67.422	1/2:38:0,18,20:0:0:18,20:622,712:-108.92,-58.3861,-52.9675,-50.8845,0,-44.8639	1/1:81:0,81,0:0:0:81,0:2772,0:-249.72,-24.3834,0,-249.72,-24.3834,-249.72	1/1:29:0,29,0:0:0:29,0:995,0:-89.6293,-8.72987,0,-89.6293,-8.72987,-89.6293	1/1:27:0,27,0:0:0:27,0:938,0:-84.7183,-8.12781,0,-84.7183,-8.12781,-84.7183	1/1:54:0,54,0:0:0:54,0:1890,0:-170.378,-16.2556,0,-170.378,-16.2556,-170.378	1/1:35:0,35,0:0:0:35,0:1209,0:-109.111,-10.5361,0,-109.111,-10.5361,-109.111	1/1:61:0,60,0:0:0:60,0:2093,0:-188.349,-18.0618,0,-188.349,-18.0618,-188.349	1/2:40:0,25,15:0:0:25,15:853,540:-113.624,-44.4211,-36.8953,-69.5556,0,-65.0401	1/1:12:0,12,0:0:0:12,0:412,0:-37.4072,-3.61236,0,-37.4072,-3.61236,-37.4072	1/1:29:0,29,0:0:0:29,0:983,0:-88.7382,-8.72987,0,-88.7382,-8.72987,-88.7382	1/2:34:0,16,18:0:0:16,18:548,640:-96.9883,-52.5108,-47.6943,-44.826,0,-39.4074	1/1:24:0,24,0:0:0:24,0:808,0:-73.0297,-7.22472,0,-73.0297,-7.22472,-73.0297	1/1:22:0,22,0:0:0:22,0:774,0:-69.9817,-6.62266,0,-69.9817,-6.62266,-69.9817	1/1:17:0,17,0:0:0:17,0:601,0:-54.42,-5.11751,0,-54.42,-5.11751,-54.42	1/1:23:0,23,0:0:0:23,0:806,0:-72.8599,-6.92369,0,-72.8599,-6.92369,-72.8599	1/1:21:0,21,0:0:0:21,0:729,0:-65.9307,-6.32163,0,-65.9307,-6.32163,-65.9307	1/2:12:0,6,6:0:0:6,6:211,216:-35.156,-17.9843,-16.1782,-17.5274,0,-15.7212	1/1:157:0,156,0:0:0:156,0:5449,0:-490.351,-46.9607,0,-490.351,-46.9607,-490.351	1/1:54:0,54,0:0:0:54,0:1877,0:-169.188,-16.2556,0,-169.188,-16.2556,-169.188	1/1:69:0,69,0:0:0:69,0:2401,0:-216.348,-20.7711,0,-216.348,-20.7711,-216.348	1/1:37:0,37,0:0:0:37,0:1288,0:-116.191,-11.1381,0,-116.191,-11.1381,-116.191	1/1:39:0,39,0:0:0:39,0:1352,0:-121.977,-11.7402,0,-121.977,-11.7402,-121.977	1/1:36:0,36,0:0:0:36,0:1214,0:-109.559,-10.8371,0,-109.559,-10.8371,-109.559	1/2:131:0,61,70:0:0:61,70:2151,2495:-378.869,-203.729,-185.366,-175.495,0,-154.423	1/1:120:0,120,0:0:0:120,0:4137,0:-372.524,-36.1236,0,-372.524,-36.1236,-372.524	1/1:11:0,11,0:0:0:11,0:367,0:-33.3524,-3.31133,0,-33.3524,-3.31133,-33.3524	1/1:120:0,119,0:0:0:119,0:4111,0:-369.951,-35.8226,0,-369.951,-35.8226,-369.951	1/1:45:0,43,2:0:0:43,2:1440,72:-129.476,-12.9443,0,-123.6,-6.70963,-122.998	1/1:61:0,61,0:0:0:61,0:2094,0:-188.728,-18.3628,0,-188.728,-18.3628,-188.728	1/1:2:0,2,0:0:0:2,0:60,0:-5.69826,-0.60206,0,-5.69826,-0.60206,-5.69826	1/2:8:0,2,6:0:0:2,6:72,216:-23.8592,-17.9843,-17.3823,-6.23466,0,-4.42848	1/1:4:0,4,0:0:0:4,0:128,0:-11.8363,-1.20412,0,-11.8363,-1.20412,-11.8363	1/1:4:0,4,0:0:0:4,0:129,0:-11.9277,-1.20412,0,-11.9277,-1.20412,-11.9277	1/1:14:0,14,0:0:0:14,0:482,0:-43.7065,-4.21442,0,-43.7065,-4.21442,-43.7065	1/1:93:0,93,0:0:0:93,0:3257,0:-293.348,-27.9958,0,-293.348,-27.9958,-293.348	1/1:106:0,106,0:0:0:106,0:3711,0:-334.19,-31.9092,0,-334.19,-31.9092,-334.19	1/2:12:0,7,5:0:0:7,5:245,180:-34.9749,-15.0469,-12.9397,-20.2837,0,-18.7785	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:65:0,34,31:0:0:34,31:1160,1112:-185.172,-91.0594,-80.8244,-94.4629,0,-85.131	1/2:21:0,7,13:0:0:7,13:250,459:-57.8501,-37.4641,-35.3569,-20.4674,0,-16.554	1/1:55:0,55,0:0:0:55,0:1904,0:-171.636,-16.5567,0,-171.636,-16.5567,-171.636	1/1:18:0,18,0:0:0:18,0:619,0:-56.0322,-5.41854,0,-56.0322,-5.41854,-56.0322	1/1:25:0,25,0:0:0:25,0:894,0:-80.7803,-7.52575,0,-80.7803,-7.52575,-80.7803	1/1:55:0,55,0:0:0:55,0:1903,0:-171.547,-16.5567,0,-171.547,-16.5567,-171.547	1/1:65:0,65,0:0:0:65,0:2254,0:-203.125,-19.567,0,-203.125,-19.567,-203.125	1/1:58:0,58,0:0:0:58,0:2012,0:-181.353,-17.4597,0,-181.353,-17.4597,-181.353	1/1:76:0,76,0:0:0:76,0:2618,0:-235.87,-22.8783,0,-235.87,-22.8783,-235.87	1/2:53:0,19,33:0:0:19,33:655,1188:-150.136,-96.9348,-91.2152,-53.1924,0,-43.2584	1/1:120:0,120,0:0:0:120,0:4159,0:-374.434,-36.1236,0,-374.434,-36.1236,-374.434	1/1:3:0,3,0:0:0:3,0:106,0:-9.8891,-0.90309,0,-9.8891,-0.90309,-9.8891	1/2:77:0,39,38:0:0:39,38:1338,1364:-220.247,-111.622,-99.8814,-108.977,0,-97.5375	1/1:20:0,20,0:0:0:20,0:683,0:-61.7872,-6.0206,0,-61.7872,-6.0206,-61.7872	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:44:0,28,16:0:0:28,16:974,572:-126.186,-46.9969,-38.5681,-79.5432,0,-74.7267	1/2:22:0,14,8:0:0:14,8:470,284:-61.5539,-23.4951,-19.2807,-38.4066,0,-35.9984	1/1:12:0,12,0:0:0:12,0:426,0:-38.6779,-3.61236,0,-38.6779,-3.61236,-38.6779	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-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chr03	21957253	.	A	G	20818	PASS	AB=0.503053;ABP=3.20915;AC=26;AF=0.138298;AN=188;AO=1249;CIGAR=1X;DP=10633;DPB=10633;DPRA=0.922538;EPP=2715.18;EPPR=20371.4;GTI=1;LEN=1;MEANALT=1.06667;MQM=59.8639;MQMR=59.8881;NS=94;NUMALT=1;ODDS=5.43612;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44634;QR=335916;RO=9380;RPL=1249;RPP=2715.18;RPPR=20371.4;RPR=0;RUN=1;SAF=0;SAP=2715.18;SAR=1249;SRF=0;SRP=20371.4;SRR=9380;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:39,24:39:1404:24:856:-58.3962,0,-107.694	0/1:96:55,41:55:1980:41:1472:-103.877,0,-149.576	0/1:226:114,112:114:4089:112:3983:-290.608,0,-299.991	0/0:358:358,0:358:12844:0:0:0,-107.769,-1155.72	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.745	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.561	0/1:100:59,41:59:2109:41:1472:-102.673,0,-159.974	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.68	0/0:124:124,0:124:4456:0:0:0,-37.3277,-401.208	0/1:80:42,38:42:1495:38:1360:-98.61,0,-110.761	0/0:62:61,1:61:2173:1:36:0,-15.0656,-192.232	0/0:84:83,1:83:2976:1:36:0,-21.6882,-264.446	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.718	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8359	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3082	0/1:38:26,12:26:936:12:428:-27.4197,0,-73.1203	0/0:336:336,0:336:12053:0:0:0,-101.146,-1084.61	0/0:211:211,0:211:7580:0:0:0,-63.5173,-682.228	0/0:191:191,0:191:6848:0:0:0,-57.4967,-616.253	0/0:184:184,0:184:6566:0:0:0,-55.3895,-591.016	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.716	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.871	0/1:308:156,152:156:5604:152:5448:-397.73,0,-411.762	0/0:318:316,1:316:11319:1:36:0,-92.1131,-1015.06	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.322	0/0:440:440,0:440:15758:0:0:0,-132.453,-1417.72	0/0:161:156,5:156:5592:5:176:0,-32.2808,-487.216	0/0:133:133,0:133:4757:0:0:0,-40.037,-428.282	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:23:9,14:9:324:14:504:-38.7662,0,-22.5822	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:213:213,0:213:7656:0:0:0,-64.1194,-689.042	0/0:145:145,0:145:5200:0:0:0,-43.6493,-468.138	0/1:46:23,23:23:828:23:828:-60.9958,0,-60.9967	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:183:81,102:81:2893:102:3628:-271.623,0,-205.509	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/0:206:206,0:206:7351:0:0:0,-62.0122,-661.611	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.106	0/0:177:177,0:177:6341:0:0:0,-53.2823,-570.779	0/0:154:154,0:154:5508:0:0:0,-46.3586,-495.024	0/0:245:245,0:245:8750:0:0:0,-73.7523,-787.353	0/0:145:145,0:145:5169:0:0:0,-43.6493,-464.953	0/1:105:50,54:50:1800:54:1936:-142.846,0,-130.615	0/0:162:162,0:162:5808:0:0:0,-48.7669,-522.742	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:137:77,60:77:2760:60:2156:-153.058,0,-207.399	0/0:115:115,0:115:4121:0:0:0,-34.6184,-371.072	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:206:94,112:94:3358:112:3999:-298.086,0,-240.421	0/1:45:18,27:18:648:27:964:-73.5281,0,-45.1055	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:118:118,0:118:4244:0:0:0,-35.5215,-382.123	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.143	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:256:256,0:256:9118:0:0:0,-77.0637,-820.324	0/0:189:189,0:189:6765:0:0:0,-56.8947,-608.921	0/0:90:90,0:90:3213:0:0:0,-27.0927,-288.752	0/0:103:103,0:103:3669:0:0:0,-31.0061,-330.408	0/0:242:242,0:242:8668:0:0:0,-72.8493,-779.971	0/1:172:57,115:57:2018:115:4100:-317.388,0,-129.795	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.618	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.012	0/0:39:39,0:39:1365:0:0:0,-11.7402,-123.146	0/0:167:167,0:167:5972:0:0:0,-50.272,-537.585	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.844	0/0:233:233,0:233:8340:0:0:0,-70.14,-750.59	0/0:258:258,0:258:9268:0:0:0,-77.6657,-833.919	0/1:62:34,28:34:1194:28:991:-70.6807,0,-89.0892	0/1:40:23,17:23:824:17:604:-42.646,0,-62.4398	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4573	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:125:123,2:123:4400:2:72:0,-30.792,-389.318	0/0:274:274,0:274:9802:0:0:0,-82.4822,-882.117	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:86:45,41:45:1620:41:1476:-107.248,0,-120.201	0/1:37:16,21:16:576:21:739:-55.6943,0,-41.0192	0/1:144:84,60:84:3016:60:2156:-150.959,0,-228.132	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:70:69,0:69:2476:0:0:0,-20.7711,-222.73	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.953	0/1:35:14,21:14:504:21:739:-56.2963,0,-35.162	0/1:104:52,52:52:1844:52:1863:-136.641,0,-134.907	0/1:95:38,57:38:1364:57:2036:-154.914,0,-94.4629	0/0:145:145,0:145:5163:0:0:0,-43.6493,-464.797	0/0:113:112,0:112:4016:0:0:0,-33.7154,-361.268
chr03	21961324	.	A	G	24843	PASS	AB=0.5;ABP=3.0103;AC=25;AF=0.132979;AN=188;AO=1476;CIGAR=1X;DP=10862;DPB=10862;DPRA=1.03091;EPP=3190.76;EPPR=20225.9;GTI=0;LEN=1;MEANALT=1.41379;MQM=59.9844;MQMR=33.8803;NS=94;NUMALT=1;ODDS=7.45796;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52695;QR=333491;RO=9313;RPL=2;RPP=3190.76;RPPR=20225.9;RPR=1474;RUN=1;SAF=1476;SAP=3208.1;SAR=0;SRF=9313;SRP=20225.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:41,31:41:1472:31:1112:-78.7172,0,-92.4864	0/1:87:44,43:44:1568:43:1530:-111.802,0,-96.0814	0/1:165:117,48:117:4181:48:1720:-105.416,0,-274.258	0/0:251:245,1:245:8769:1:36:0,-70.802,-694.189	0/0:94:94,0:94:3368:0:0:0,-28.2968,-263.04	0/0:35:35,0:35:1256:0:0:0,-10.536,-98.2563	0/0:87:87,0:87:3116:0:0:0,-26.1896,-249.225	0/0:379:379,0:379:13444:0:0:0,-114.09,-1055.84	0/0:126:123,0:123:4416:0:0:0,-37.0267,-344.396	0/1:80:46,34:46:1648:34:1216:-85.6642,0,-106.772	0/0:97:96,0:96:3429:0:0:0,-28.8989,-274.303	0/0:154:153,0:153:5496:0:0:0,-46.0576,-426.713	0/1:96:43,48:43:1544:48:1724:-127.754,0,-92.4725	0/0:62:62,0:62:2224:0:0:0,-18.6639,-173.356	0/0:113:110,0:110:3948:0:0:0,-33.1133,-315.772	0/0:101:99,0:99:3530:0:0:0,-29.802,-275.079	0/0:42:42,0:42:1508:0:0:0,-12.6433,-118.32	0/0:51:48,0:48:1708:0:0:0,-14.4494,-132.306	0/1:64:31,32:31:1116:32:1152:-84.749,0,-67.2855	0/0:138:138,0:138:4956:0:0:0,-41.5421,-396.606	0/0:147:147,0:147:5276:0:0:0,-44.2514,-411.855	0/0:131:130,0:130:4645:0:0:0,-39.1339,-354.416	0/0:141:140,0:140:4990:0:0:0,-42.1442,-401.617	0/0:60:60,0:60:2156:0:0:0,-18.0618,-169.406	0/0:87:87,0:87:3124:0:0:0,-26.1896,-241.087	0/1:303:165,138:165:5901:138:4920:-351.738,0,-361.082	0/0:307:307,0:307:10986:0:0:0,-92.4162,-857.652	0/0:43:43,0:43:1533:0:0:0,-12.9443,-117.706	0/0:278:275,0:275:9849:0:0:0,-82.7832,-746.716	0/0:139:135,4:135:4848:4:144:0,-28.5296,-367.21	0/0:70:70,0:70:2516:0:0:0,-21.0721,-197.879	0/1:27:21,6:21:752:6:216:-11.6627,0,-51.0608	0/1:42:24,18:24:864:18:648:-46.0086,0,-55.6633	0/0:24:24,0:24:864:0:0:0,-7.22472,-67.7829	0/0:16:15,1:15:536:1:36:0,-1.2182,-38.9518	0/0:59:59,0:59:2116:0:0:0,-17.7608,-164.943	0/0:262:258,0:258:9268:0:0:0,-77.6657,-704.185	0/0:111:111,0:111:3977:0:0:0,-33.4143,-309.736	0/1:106:49,57:49:1764:57:2040:-151.963,0,-103.58	0/0:24:24,0:24:856:0:0:0,-7.22472,-67.1332	0/1:90:42,48:42:1504:48:1716:-127.633,0,-89.5296	0/1:46:15,31:15:540:31:1104:-85.8233,0,-27.8682	0/0:228:227,0:227:8129:0:0:0,-68.3338,-630.869	0/0:78:77,1:77:2772:1:36:0,-19.8821,-216.389	0/0:78:77,0:77:2756:0:0:0,-23.1793,-220.243	0/0:149:145,0:145:5189:0:0:0,-43.6493,-392.043	0/0:137:137,0:137:4912:0:0:0,-41.2411,-382.077	0/0:238:237,0:237:8447:0:0:0,-71.3441,-675.682	0/0:90:90,0:90:3228:0:0:0,-27.0927,-259.848	0/1:178:78,99:78:2796:99:3527:-264.075,0,-169.641	0/0:65:65,0:65:2336:0:0:0,-19.5669,-179.661	0/0:26:26,0:26:936:0:0:0,-7.82678,-76.0227	0/1:191:111,79:111:3977:79:2829:-197.376,0,-251.998	0/0:45:45,0:45:1620:0:0:0,-13.5463,-123.174	0/0:31:31,0:31:1112:0:0:0,-9.33193,-88.4587	0/1:184:117,67:117:4204:67:2393:-160.238,0,-270.569	0/1:103:56,47:56:2012:47:1670:-119.58,0,-130.529	0/0:29:29,0:29:1040:0:0:0,-8.72987,-80.8709	0/0:13:13,0:13:468:0:0:0,-3.91339,-35.3734	0/0:92:92,0:92:3304:0:0:0,-27.6948,-258.906	0/0:145:145,0:145:5185:0:0:0,-43.6493,-411.335	0/0:8:8,0:8:288:0:0:0,-2.40824,-22.7278	0/0:202:202,0:202:7233:0:0:0,-60.8081,-550.633	0/0:145:144,0:144:5145:0:0:0,-43.3483,-410.144	0/0:59:59,0:59:2101:0:0:0,-17.7608,-162.674	0/0:125:123,0:123:4428:0:0:0,-37.0267,-353.47	0/0:186:186,0:186:6680:0:0:0,-55.9916,-535.128	0/1:180:58,119:58:2084:119:4244:-328.542,0,-112.942	0/0:60:58,0:58:2076:0:0:0,-17.4597,-162.943	0/0:85:85,0:85:3044:0:0:0,-25.5875,-234.764	0/0:70:69,0:69:2461:0:0:0,-20.7711,-185.568	0/0:18:18,0:18:648:0:0:0,-5.41854,-51.261	0/0:185:185,0:185:6612:0:0:0,-55.6905,-518.944	0/0:104:103,0:103:3700:0:0:0,-31.0061,-288.514	0/0:143:141,0:141:5049:0:0:0,-42.4452,-392.778	0/0:260:259,0:259:9288:0:0:0,-77.9668,-738.102	0/1:99:41,58:41:1472:58:2043:-154.334,0,-84.9453	0/1:102:51,50:51:1813:50:1764:-128.362,0,-111.823	0/0:22:22,0:22:792:0:0:0,-6.62266,-61.2223	0/0:167:167,0:167:5969:0:0:0,-50.272,-466.43	0/0:153:150,0:150:5345:0:0:0,-45.1545,-417.337	0/0:239:239,0:239:8564:0:0:0,-71.9462,-687.517	0/0:74:74,0:74:2656:0:0:0,-22.2762,-213.193	0/1:107:46,60:46:1652:60:2135:-160.225,0,-99.0335	0/1:81:36,44:36:1276:44:1584:-118.485,0,-79.204	0/1:179:78,100:78:2804:100:3572:-267.822,0,-171.241	0/0:20:19,0:19:672:0:0:0,-5.71957,-53.3955	0/0:106:103,0:103:3700:0:0:0,-31.0061,-288.311	0/0:117:117,0:117:4185:0:0:0,-35.2205,-327.837	0/1:81:35,45:35:1256:45:1604:-120.292,0,-73.2981	0/1:138:75,63:75:2688:63:2248:-161.039,0,-166.654	0/1:137:33,104:33:1180:104:3732:-294.839,0,-51.6803	0/0:141:140,0:140:5020:0:0:0,-42.1442,-406.208	0/0:162:157,0:157:5625:0:0:0,-47.2617,-451.846
chr03	21961410	.	T	C	248057	PASS	AB=0.619417;ABP=338.558;AC=164;AF=0.87234;AN=188;AO=11380;CIGAR=1X;DP=12419;DPB=12419;DPRA=0;EPP=24688.3;EPPR=2198.78;GTI=1;LEN=1;MEANALT=1;MQM=45.7954;MQMR=59.9731;NS=94;NUMALT=1;ODDS=1.37351;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=406227;QR=37256;RO=1039;RPL=11377;RPP=24688.3;RPPR=2198.78;RPR=3;RUN=1;SAF=0;SAP=24714.4;SAR=11380;SRF=0;SRP=2259.17;SRR=1039;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:11,59:11:396:59:2107:-164.087,0,-14.9106	0/1:122:38,84:38:1368:84:2982:-225.111,0,-86.6952	0/1:85:21,64:21:756:64:2261:-173.891,0,-42.7797	1/1:306:1,305:1:36:305:10891:-967.009,-88.5169,0	1/1:76:3,73:3:108:73:2607:-220.325,-12.8031,0	1/1:126:1,125:1:36:125:4469:-386.282,-34.3325,0	1/1:251:0,251:0:0:251:8960:-797.262,-75.5585,0	1/1:167:0,167:0:0:167:5964:-523.161,-50.272,0	1/1:186:0,186:0:0:186:6620:-580.729,-55.9916,0	0/1:91:48,43:48:1720:43:1529:-108.177,0,-127.692	1/1:116:0,116:0:0:116:4112:-366.285,-34.9195,0	1/1:107:0,107:0:0:107:3773:-328.155,-32.2102,0	0/1:120:64,56:64:2300:56:2008:-139.118,0,-171.137	1/1:97:0,97:0:0:97:3465:-306.728,-29.1999,0	1/1:128:0,128:0:0:128:4584:-407.196,-38.5318,0	1/1:103:0,103:0:0:103:3680:-325.783,-31.0061,0	1/1:109:0,109:0:0:109:3907:-342.505,-32.8123,0	1/1:98:0,98:0:0:98:3508:-307.314,-29.5009,0	0/1:51:15,36:15:540:36:1292:-98.166,0,-33.584	1/1:317:0,317:0:0:317:11334:-1008.18,-95.4265,0	1/1:161:0,161:0:0:161:5755:-508.33,-48.4658,0	1/1:217:0,217:0:0:217:7741:-692.453,-65.3235,0	1/1:177:0,177:0:0:177:6323:-563.766,-53.2823,0	1/1:260:0,260:0:0:260:9297:-821.665,-78.2678,0	1/1:102:0,102:0:0:102:3639:-322.869,-30.7051,0	0/1:417:145,272:145:5196:272:9666:-739.29,0,-342.248	1/1:184:0,184:0:0:184:6596:-582.774,-55.3895,0	1/1:63:0,63:0:0:63:2252:-200.173,-18.9649,0	1/1:218:0,218:0:0:218:7761:-693.122,-65.6245,0	1/1:257:0,257:0:0:257:9195:-816.076,-77.3647,0	1/1:209:0,209:0:0:209:7431:-662.244,-62.9153,0	1/1:2:0,2:0:0:2:72:-6.74218,-0.60206,0	0/1:19:7,12:7:252:12:424:-32.1741,0,-17.3094	1/1:25:0,25:0:0:25:892:-78.9344,-7.52575,0	1/1:9:0,9:0:0:9:315:-28.1144,-2.70927,0	1/1:4:0,4:0:0:4:135:-12.2584,-1.20412,0	1/1:354:0,354:0:0:354:12656:-1131.87,-106.565,0	1/1:317:0,317:0:0:317:11325:-1001.34,-95.4265,0	0/1:83:30,53:30:1076:53:1908:-143.319,0,-72.1674	1/1:8:0,8:0:0:8:288:-25.9042,-2.40824,0	0/1:128:39,89:39:1391:89:3167:-237.939,0,-86.9564	0/1:51:17,34:17:612:34:1211:-92.4807,0,-40.0609	1/1:184:0,184:0:0:184:6556:-580.143,-55.3895,0	1/1:171:1,170:1:36:170:6076:-535.913,-47.8779,0	1/1:114:0,114:0:0:114:4063:-361.157,-34.3174,0	1/1:174:0,174:0:0:174:6176:-551.387,-52.3792,0	1/1:130:0,130:0:0:130:4661:-408.187,-39.1339,0	1/1:44:0,44:0:0:44:1572:-140.573,-13.2453,0	1/1:219:0,219:0:0:219:7815:-693.628,-65.9256,0	0/1:129:33,96:33:1188:96:3452:-268.996,0,-68.3957	1/1:448:0,448:0:0:448:16000:-1429.38,-134.861,0	1/1:15:0,15:0:0:15:536:-47.6398,-4.51545,0	0/1:103:26,77:26:932:77:2756:-209.885,0,-53.1928	1/1:76:0,76:0:0:76:2720:-243.688,-22.8783,0	1/1:39:0,39:0:0:39:1400:-123.062,-11.7402,0	0/1:102:35,67:35:1260:67:2400:-180.966,0,-83.0004	0/1:108:34,74:34:1216:74:2655:-204.516,0,-77.2353	1/1:1:0,1:0:0:1:36:-3.58305,-0.30103,0	1/1:32:0,32:0:0:32:1144:-102.347,-9.63296,0	1/1:133:0,133:0:0:133:4768:-422.274,-40.037,0	1/1:153:0,153:0:0:153:5443:-484.918,-46.0576,0	1/1:4:0,4:0:0:4:144:-13.0314,-1.20412,0	1/1:230:0,230:0:0:230:8193:-731.893,-69.2369,0	1/1:296:0,296:0:0:296:10578:-938.373,-89.1049,0	1/1:66:0,66:0:0:66:2363:-208.61,-19.868,0	1/1:109:0,109:0:0:109:3875:-344.164,-32.8123,0	1/1:247:1,246:1:36:246:8790:-775.775,-70.7561,0	0/1:59:36,23:36:1296:23:812:-55.0366,0,-99.1832	1/1:29:0,29:0:0:29:1040:-91.7434,-8.72987,0	1/1:88:0,88:0:0:88:3148:-275.751,-26.4906,0	1/1:154:0,154:0:0:154:5512:-492.389,-46.3586,0	1/1:30:0,30:0:0:30:1072:-95.6144,-9.0309,0	1/1:89:0,89:0:0:89:3186:-280.762,-26.7917,0	1/1:57:0,57:0:0:57:2039:-179.532,-17.1587,0	1/1:282:0,282:0:0:282:10024:-885.822,-84.8905,0	1/1:213:0,213:0:0:213:7636:-679.181,-64.1194,0	0/1:113:66,47:66:2363:47:1666:-112.977,0,-178.911	0/1:100:22,78:22:792:78:2786:-215.569,0,-41.5027	1/1:24:1,23:1:36:23:820:-68.9981,-3.62645,0	1/1:127:0,127:0:0:127:4539:-402.212,-38.2308,0	1/1:69:0,69:0:0:69:2471:-217.322,-20.7711,0	1/1:136:0,136:0:0:136:4885:-432.074,-40.9401,0	1/1:147:0,147:0:0:147:5212:-462.1,-44.2514,0	0/1:97:41,56:41:1468:56:2012:-150.581,0,-103.216	0/1:155:72,83:72:2560:83:2955:-215.951,0,-183.971	0/1:253:105,148:105:3767:148:5286:-394.932,0,-263.067	1/1:75:0,75:0:0:75:2696:-237.665,-22.5773,0	1/1:134:0,134:0:0:134:4788:-419.462,-40.338,0	1/1:125:0,125:0:0:125:4458:-391.863,-37.6288,0	0/1:53:18,35:18:644:35:1252:-95.5108,0,-42.336	0/1:90:40,50:40:1431:50:1780:-131.253,0,-101.966	0/1:110:68,42:68:2444:42:1508:-101.676,0,-187.101	1/1:111:0,111:0:0:111:3941:-349.418,-33.4143,0	1/1:181:0,181:0:0:181:6429:-571.057,-54.4864,0
chr03	21961418	.	A	C	250399	PASS	AB=0.618474;ABP=336.937;AC=164;AF=0.87234;AN=188;AO=11485;CIGAR=1X;DP=12537;DPB=12537;DPRA=0;EPP=24942.4;EPPR=2261.37;GTI=1;LEN=1;MEANALT=1.04255;MQM=45.7848;MQMR=59.9485;NS=94;NUMALT=1;ODDS=2.0147;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=409897;QR=37561;RO=1048;RPL=11485;RPP=24942.4;RPPR=2261.37;RPR=0;RUN=1;SAF=0;SAP=24942.4;SAR=11485;SRF=0;SRP=2278.71;SRR=1048;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:11,58:11:396:58:2080:-161.969,0,-15.2117	0/1:126:40,86:40:1436:86:3066:-231.177,0,-91.6079	0/1:87:22,65:22:788:65:2321:-178.355,0,-45.0552	1/1:310:0,310:0:0:310:11082:-987.187,-93.3193,0	1/1:78:0,78:0:0:78:2755:-243.16,-23.4803,0	1/1:130:0,130:0:0:130:4677:-407.016,-39.1339,0	1/1:254:0,254:0:0:254:9030:-804.143,-76.4616,0	1/1:171:0,171:0:0:171:6118:-536.615,-51.4761,0	1/1:188:0,188:0:0:188:6724:-589.836,-56.5936,0	0/1:94:50,44:50:1777:44:1561:-109.704,0,-131.914	1/1:111:0,111:0:0:111:3987:-354.925,-33.4143,0	1/1:108:0,108:0:0:108:3836:-334.218,-32.5112,0	0/1:120:64,56:64:2300:56:2016:-139.618,0,-171.137	1/1:99:0,99:0:0:99:3526:-312.128,-29.802,0	1/1:131:0,131:0:0:131:4700:-417.6,-39.4349,0	1/1:104:0,104:0:0:104:3710:-328.077,-31.3071,0	1/1:108:0,108:0:0:108:3888:-340.723,-32.5112,0	1/1:99:0,99:0:0:99:3526:-308.993,-29.802,0	0/1:51:15,36:15:536:36:1292:-98.166,0,-33.2223	1/1:318:0,318:0:0:318:11349:-1009.57,-95.7275,0	1/1:166:0,166:0:0:166:5903:-521.384,-49.971,0	1/1:218:0,218:0:0:218:7741:-692.467,-65.6245,0	1/1:178:0,178:0:0:178:6317:-563.031,-53.5833,0	1/1:260:0,260:0:0:260:9267:-818.183,-78.2678,0	1/1:104:0,104:0:0:104:3706:-328.747,-31.3071,0	0/1:425:147,278:147:5284:278:9882:-756.357,0,-347.754	1/1:185:0,185:0:0:185:6606:-583.436,-55.6906,0	1/1:63:0,63:0:0:63:2256:-200.506,-18.9649,0	1/1:221:0,221:0:0:221:7851:-701.957,-66.5276,0	1/1:259:0,258:0:0:258:9170:-813.356,-77.6657,0	1/1:210:0,210:0:0:210:7472:-666.385,-63.2163,0	1/1:2:0,2:0:0:2:72:-6.74218,-0.60206,0	0/1:18:7,11:7:252:11:396:-29.9531,0,-17.6104	1/1:25:0,25:0:0:25:900:-79.5748,-7.52575,0	1/1:9:0,9:0:0:9:324:-28.8723,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.0277,-1.20412,0	1/1:353:0,353:0:0:353:12568:-1124.15,-106.264,0	1/1:320:0,320:0:0:320:11432:-1010,-96.3296,0	0/1:83:29,54:29:1040:54:1944:-146.488,0,-68.9289	1/1:9:0,9:0:0:9:324:-29.0978,-2.70927,0	0/1:128:40,88:40:1428:88:3144:-235.984,0,-90.2857	0/1:51:17,34:17:612:34:1224:-93.5869,0,-40.0609	1/1:184:0,184:0:0:184:6580:-582.55,-55.3895,0	1/1:171:0,171:0:0:171:6114:-543.612,-51.4761,0	1/1:114:0,114:0:0:114:4100:-364.366,-34.3174,0	1/1:178:0,178:0:0:178:6310:-563.298,-53.5833,0	1/1:131:0,131:0:0:131:4705:-411.994,-39.4349,0	1/1:44:0,44:0:0:44:1580:-141.259,-13.2453,0	1/1:221:1,220:1:36:220:7855:-692.55,-62.9294,0	0/1:131:34,97:34:1224:97:3484:-271.261,0,-71.0321	1/1:452:1,450:1:21:450:16067:-1433.79,-133.887,0	1/1:15:0,15:0:0:15:540:-47.8211,-4.51545,0	0/1:102:26,76:26:936:76:2698:-205.031,0,-53.8544	1/1:77:0,77:0:0:77:2745:-246.152,-23.1793,0	1/1:39:0,39:0:0:39:1404:-123.381,-11.7402,0	0/1:104:35,69:35:1260:69:2441:-183.464,0,-82.3984	0/1:112:35,76:35:1260:76:2717:-208.941,0,-80.0773	1/1:2:0,2:0:0:2:72:-6.80779,-0.60206,0	1/1:31:0,31:0:0:31:1101:-98.4861,-9.33193,0	1/1:135:0,135:0:0:135:4837:-428.101,-40.6391,0	1/1:155:0,155:0:0:155:5531:-492.661,-46.6597,0	1/1:4:0,4:0:0:4:144:-13.0314,-1.20412,0	1/1:237:0,237:0:0:237:8429:-751.567,-71.3441,0	1/1:300:0,300:0:0:300:10720:-950.92,-90.309,0	1/1:68:0,68:0:0:68:2414:-213.129,-20.47,0	1/1:110:0,110:0:0:110:3941:-349.188,-33.1133,0	1/1:248:1,247:1:36:247:8801:-776.242,-71.0572,0	0/1:61:37,24:37:1317:24:849:-57.6932,0,-100.467	1/1:29:0,29:0:0:29:1044:-91.8838,-8.72987,0	1/1:88:0,88:0:0:88:3164:-276.813,-26.4906,0	1/1:153:0,153:0:0:153:5470:-488.375,-46.0576,0	1/1:29:0,29:0:0:29:1029:-91.7652,-8.72987,0	1/1:92:0,92:0:0:92:3266:-287.925,-27.6948,0	1/1:58:0,58:0:0:58:2050:-180.564,-17.4597,0	1/1:281:0,280:0:0:280:9973:-881.256,-84.2884,0	1/1:216:0,216:0:0:216:7750:-689.743,-65.0225,0	0/1:114:67,47:67:2376:47:1669:-112.972,0,-179.779	0/1:100:22,78:22:777:78:2785:-215.466,0,-40.1474	1/1:26:1,25:1:36:25:896:-75.5962,-4.22851,0	1/1:129:0,129:0:0:129:4580:-404.453,-38.8329,0	1/1:70:0,70:0:0:70:2490:-218.977,-21.0721,0	1/1:135:0,135:0:0:135:4811:-425.706,-40.6391,0	1/1:149:0,149:0:0:149:5348:-473.842,-44.8535,0	0/1:100:43,57:43:1548:57:2037:-151.907,0,-109.508	0/1:157:73,84:73:2613:84:2997:-218.815,0,-188.137	0/1:252:103,149:103:3704:149:5299:-396.595,0,-257.701	1/1:75:0,75:0:0:75:2688:-237.026,-22.5773,0	1/1:133:0,133:0:0:133:4769:-417.68,-40.037,0	1/1:126:0,126:0:0:126:4536:-398.388,-37.9298,0	0/1:53:18,35:18:648:35:1260:-96.1785,0,-42.6973	0/1:91:41,50:41:1472:50:1781:-130.978,0,-105.371	0/1:110:68,42:68:2448:42:1512:-102.019,0,-187.461	1/1:114:0,114:0:0:114:4047:-358.398,-34.3174,0	1/1:184:0,184:0:0:184:6580:-583.517,-55.3895,0
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chr03	22096938	.	G	A	16360.7	PASS	AB=0.500325;ABP=3.01171;AC=24;AF=0.129032;AN=186;AO=775;CIGAR=1X;DP=6606;DPB=6606;DPRA=0.90357;EPP=509.103;EPPR=2860.31;GTI=0;LEN=1;MEANALT=1;MQM=59.9329;MQMR=59.9909;NS=93;NUMALT=1;ODDS=8.25801;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27708;QR=208426;RO=5827;RPL=600;RPP=509.103;RPPR=2856.18;RPR=175;RUN=1;SAF=775;SAP=1685.9;SAR=0;SRF=5826;SRP=12647.5;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:15,12:15:532:12:432:-31.0934,0,-38.889	0/1:28:14,14:14:500:14:504:-37.2693,0,-36.9073	0/1:140:74,66:74:2664:66:2358:-169.307,0,-197.861	0/0:166:166,0:166:5926:0:0:0,-49.971,-533.449	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:108:107,0:107:3848:0:0:0,-32.2102,-346.154	0/1:67:29,38:29:1040:38:1360:-102.532,0,-73.7454	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.133	0/1:58:31,27:31:1116:27:960:-69.2565,0,-83.292	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:53:52,1:52:1868:1:27:0,-13.2548,-165.699	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.223	0/0:128:128,0:128:4563:0:0:0,-38.5318,-410.837	0/0:152:152,0:152:5448:0:0:0,-45.7566,-490.448	0/0:136:136,0:136:4855:0:0:0,-40.9401,-437.104	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:166:75,91:75:2692:91:3259:-243.558,0,-192.553	0/0:178:177,0:177:6343:0:0:0,-53.2823,-570.729	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:198:198,0:198:7087:0:0:0,-59.6039,-637.889	0/0:88:87,1:87:3104:1:36:0,-22.8924,-275.99	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.037	.:.:.:.:.:.:.:.	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/0:163:163,0:163:5800:0:0:0,-49.0679,-522.113	0/0:94:93,1:93:3313:1:36:0,-24.6985,-294.79	0/1:29:13,16:13:464:16:576:-43.4451,0,-33.3676	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:143:96,47:96:3448:47:1673:-107.808,0,-267.485	0/1:19:6,13:6:212:13:468:-36.7401,0,-13.7052	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:45:44,0:44:1567:0:0:0,-13.2453,-140.961	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:105:51,54:51:1832:54:1932:-142.548,0,-133.553	0/0:131:131,0:131:4687:0:0:0,-39.4349,-421.99	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:89:44,45:44:1580:45:1616:-118.938,0,-115.7	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:90:55,35:55:1963:35:1248:-85.5322,0,-149.852	0/1:31:17,14:17:612:14:504:-36.3662,0,-46.0815	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.5	0/0:88:87,1:87:3115:1:36:0,-22.8924,-276.978	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:164:164,0:164:5852:0:0:0,-49.3689,-526.791	0/0:116:116,0:116:4151:0:0:0,-34.9195,-373.773	0/0:57:56,1:56:1995:1:36:0,-13.5604,-176.225	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/1:95:34,61:34:1216:61:2178:-167.688,0,-81.1487	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:140:140,0:140:5002:0:0:0,-42.1442,-450.327	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.948	0/0:73:73,0:73:2583:0:0:0,-21.9752,-232.717	0/0:161:161,0:161:5763:0:0:0,-48.4658,-518.785	0/1:73:37,36:37:1328:36:1277:-93.2559,0,-97.847	0/1:67:32,35:32:1152:35:1256:-93.1763,0,-83.8211	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8171	0/0:96:96,0:96:3429:0:0:0,-28.8989,-308.822	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/0:210:209,0:209:7475:0:0:0,-62.9153,-672.434	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:38:21,17:21:756:17:612:-43.9743,0,-56.9281	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	0/1:78:35,43:35:1260:43:1544:-115.773,0,-90.2251	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.748	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:20:8,12:8:280:12:428:-32.8382,0,-19.5187	0/1:71:33,38:33:1171:38:1359:-101.237,0,-84.3235	0/1:42:11,31:11:396:31:1093:-86.0344,0,-23.3395	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09
chr03	22138991	.	A	C	241236	PASS	AB=0.471684;ABP=22.0712;AC=163;AF=0.867021;AN=188;AO=9345;CIGAR=1X;DP=10808;DPB=10808;DPRA=0;EPP=20295.4;EPPR=3164.67;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.6302;MQMR=59.9842;NS=94;NUMALT=1;ODDS=5.88669;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=326536;QR=51918;RO=1456;RPL=1879;RPP=7256.26;RPPR=1157.95;RPR=7466;RUN=1;SAF=1879;SAP=7256.26;SAR=7466;SRF=288;SRP=1157.95;SRR=1168;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:18,13:18:648:13:464:-32.7574,0,-49.32	0/1:130:65,65:65:2319:65:2269:-165.318,0,-169.836	0/1:125:66,59:66:2352:59:2116:-152.971,0,-174.31	1/1:273:0,273:0:0:273:9606:-864.283,-82.1812,0	1/1:85:0,85:0:0:85:2975:-267.984,-25.5876,0	1/1:73:0,73:0:0:73:2573:-231.783,-21.9752,0	1/1:137:0,137:0:0:137:4787:-430.97,-41.2411,0	1/1:137:0,137:0:0:137:4799:-431.843,-41.2411,0	1/1:104:0,104:0:0:104:3704:-333.508,-31.3071,0	0/1:145:74,71:74:2628:71:2513:-182.723,0,-193.116	1/1:97:0,97:0:0:97:3336:-300.455,-29.1999,0	1/1:96:0,96:0:0:96:3330:-299.9,-28.8989,0	0/1:62:34,28:34:1205:28:947:-66.8624,0,-90.09	1/1:157:0,157:0:0:157:5420:-487.451,-47.2617,0	1/1:92:0,91:0:0:91:3156:-283.886,-27.3937,0	1/1:85:0,85:0:0:85:2943:-264.436,-25.5876,0	1/1:91:0,91:0:0:91:3108:-279.819,-27.3937,0	1/1:46:0,46:0:0:46:1578:-142.302,-13.8474,0	0/1:59:33,25:33:1157:25:867:-60.444,0,-86.6158	1/1:242:1,240:1:36:240:8436:-755.617,-69.3098,0	1/1:230:1,228:1:36:228:7974:-713.792,-65.6974,0	1/1:92:0,92:0:0:92:3207:-288.849,-27.6948,0	1/1:85:0,85:0:0:85:3001:-270.298,-25.5876,0	1/1:163:0,163:0:0:163:5716:-514.495,-49.0679,0	1/1:72:0,72:0:0:72:2536:-228.361,-21.6742,0	0/1:292:151,140:151:5416:140:4911:-354.034,0,-399.609	1/1:249:0,249:0:0:249:8721:-784.812,-74.9565,0	1/1:57:0,57:0:0:57:1993:-179.267,-17.1587,0	1/1:317:2,315:2:72:315:10991:-981.168,-88.5898,0	1/1:142:1,141:1:27:141:4904:-438.668,-40.0465,0	1/1:218:0,218:0:0:218:7638:-687.312,-65.6245,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:24:7,17:7:237:17:585:-45.5169,0,-14.4343	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:341:-31.0178,-3.0103,0	1/1:9:0,9:0:0:9:320:-29.1259,-2.70927,0	1/1:279:0,279:0:0:279:9699:-872.775,-83.9874,0	1/1:184:0,184:0:0:184:6390:-575.096,-55.3895,0	0/1:64:36,28:36:1277:28:968:-67.9715,0,-95.775	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:143:77,66:77:2719:66:2320:-166.007,0,-201.905	0/1:58:25,33:25:896:33:1125:-84.0852,0,-63.5006	1/1:159:0,159:0:0:159:5620:-505.887,-47.8638,0	1/1:145:0,145:0:0:145:5069:-456.327,-43.6494,0	1/1:78:0,78:0:0:78:2678:-241.25,-23.4803,0	1/1:137:0,137:0:0:137:4797:-431.827,-41.2411,0	1/1:98:0,98:0:0:98:3442:-309.961,-29.5009,0	1/1:157:0,157:0:0:157:5532:-497.985,-47.2617,0	1/1:118:0,118:0:0:118:4147:-373.38,-35.5215,0	0/1:166:87,79:87:3103:79:2778:-200.28,0,-229.526	1/1:139:0,139:0:0:139:4866:-437.655,-41.8432,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:103:50,53:50:1788:53:1867:-136.802,0,-130.197	1/1:57:0,57:0:0:57:2006:-180.813,-17.1587,0	1/1:11:0,11:0:0:11:392:-35.6036,-3.31133,0	0/1:144:57,87:57:2032:87:3047:-231.106,0,-139.804	0/1:70:45,25:45:1612:25:867:-57.2727,0,-124.298	1/1:19:0,19:0:0:19:630:-57.0103,-5.71957,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:137:0,137:0:0:137:4825:-434.345,-41.2411,0	1/1:143:1,142:1:36:142:4943:-441.425,-39.449,0	1/1:9:0,9:0:0:9:296:-26.9586,-2.70927,0	1/1:219:0,219:0:0:219:7734:-696.038,-65.9256,0	1/1:212:0,212:0:0:212:7420:-667.82,-63.8184,0	1/1:86:0,86:0:0:86:2988:-269.11,-25.8886,0	1/1:94:1,93:1:36:93:3265:-290.471,-24.6985,0	1/1:252:1,251:1:36:251:8795:-787.909,-72.2613,0	0/1:159:112,47:112:4000:47:1655:-101.364,0,-312.324	1/1:45:0,45:0:0:45:1541:-138.948,-13.5464,0	1/1:82:0,82:0:0:82:2883:-259.678,-24.6845,0	1/1:118:0,118:0:0:118:4083:-367.557,-35.5215,0	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	1/1:86:2,84:2:72:84:2972:-260.856,-19.0519,0	1/1:63:0,63:0:0:63:2202:-198.438,-18.9649,0	1/1:303:1,301:1:36:301:10590:-949.307,-87.6726,0	1/1:176:0,176:0:0:176:6229:-560.705,-52.9813,0	0/1:66:30,36:30:1080:36:1239:-91.8649,0,-77.6453	0/1:62:38,24:38:1368:24:825:-55.8901,0,-104.757	1/1:11:0,11:0:0:11:381:-34.6124,-3.31133,0	1/1:109:0,109:0:0:109:3868:-348.288,-32.8123,0	1/1:74:0,74:0:0:74:2605:-234.519,-22.2762,0	1/1:216:0,216:0:0:216:7553:-679.632,-65.0225,0	1/1:145:1,144:1:36:144:4927:-439.72,-40.0511,0	0/1:78:32,46:32:1148:46:1602:-120.985,0,-80.1495	0/1:171:77,93:77:2733:93:3213:-237.856,0,-194.766	0/1:265:146,119:146:5200:119:4133:-292.341,0,-388.367	1/1:43:0,43:0:0:43:1475:-133.033,-12.9443,0	1/1:80:0,80:0:0:80:2700:-243.233,-24.0824,0	1/1:100:0,100:0:0:100:3438:-309.417,-30.103,0	0/1:66:36,30:36:1296:30:1040:-74.0391,0,-97.076	0/1:133:66,67:66:2350:67:2358:-172.323,0,-171.721	0/1:113:74,39:74:2643:39:1344:-87.2365,0,-204.1	1/1:148:1,147:1:36:147:5082:-453.919,-40.9542,0	1/1:132:0,132:0:0:132:4586:-412.876,-39.736,0
chr03	22138999	.	CAGTG	TAGTA,CAGTA	194084	PASS	AB=0.483813,0.51304;ABP=8.07186,6.29485;AC=163,25;AF=0.867021,0.132979;AN=188;AO=7711,1154;CIGAR=1X3M1X,4M1X;DP=8898;DPB=8898.4;DPRA=0,1.17359;EPP=16712.5,2500.21;EPPR=5.18177;GTI=0;LEN=5,1;MEANALT=1.67021,2.22222;MQM=59.5053,59.9809;MQMR=60;NS=94;NUMALT=2;ODDS=4.78182;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=0;PRO=0;QA=271663,40820;QR=36;RO=1;RPL=4,1;RPP=16712.5,2500.21;RPPR=5.18177;RPR=7707,1153;RUN=1,1;SAF=0,0;SAP=16747.2,2508.89;SAR=7711,1154;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:33:0,14,18:0:0:14,18:470,648:-90.9391,-52.8836,-48.6692,-38.0529,0,-32.6343	1/2:136:1,67,68:1:36:67,68:2355,2428:-386.38,-195.009,-177.777,-188.729,0,-171.196	1/2:125:0,63,61:0:0:63,61:2227,2119:-353.508,-172.333,-153.368,-181.243,0,-162.88	1/1:195:0,195,0:0:0:195,0:6875,0:-618.695,-58.7009,0,-618.695,-58.7009,-618.695	1/1:65:0,65,0:0:0:65,0:2313,0:-208.43,-19.567,0,-208.43,-19.567,-208.43	1/1:77:0,77,0:0:0:77,0:2717,0:-244.734,-23.1793,0,-244.734,-23.1793,-244.734	1/1:112:0,112,0:0:0:112,0:3956,0:-356.214,-33.7154,0,-356.214,-33.7154,-356.214	1/1:145:0,144,0:0:0:144,0:5044,0:-453.657,-43.3483,0,-453.657,-43.3483,-453.657	1/1:106:0,104,0:0:0:104,0:3653,0:-328.619,-31.3071,0,-328.619,-31.3071,-328.619	1/2:103:0,47,56:0:0:47,56:1645,1963:-293.883,-160.087,-145.939,-134.145,0,-117.288	1/1:76:0,76,0:0:0:76,0:2684,0:-241.794,-22.8783,0,-241.794,-22.8783,-241.794	1/1:103:0,103,0:0:0:103,0:3633,0:-326.641,-31.0061,0,-326.641,-31.0061,-326.641	1/2:62:0,30,32:0:0:30,32:1054,1127:-177.888,-92.1045,-83.0736,-86.1353,0,-76.5023	1/1:140:0,140,0:0:0:140,0:4932,0:-443.496,-42.1442,0,-443.496,-42.1442,-443.496	1/1:65:0,64,1:0:0:64,1:2266,36:-203.818,-19.2659,0,-200.88,-15.9687,-200.579	1/1:61:0,60,1:0:0:60,1:2122,36:-190.56,-18.0618,0,-187.622,-14.7646,-187.321	1/1:93:0,93,0:0:0:93,0:3294,0:-296.521,-27.9958,0,-296.521,-27.9958,-296.521	1/1:48:0,48,0:0:0:48,0:1707,0:-153.904,-14.4494,0,-153.904,-14.4494,-153.904	1/2:59:0,26,33:0:0:26,33:928,1161:-170.435,-94.8607,-87.034,-75.9286,0,-65.9946	1/1:211:0,210,1:0:0:210,1:7404,36:-666.018,-63.2163,0,-663.08,-59.9191,-662.779	1/1:198:0,197,0:0:0:197,0:6887,0:-619.21,-59.3029,0,-619.21,-59.3029,-619.21	1/1:77:0,74,0:0:0:74,0:2605,0:-234.345,-22.2762,0,-234.345,-22.2762,-234.345	1/1:78:0,77,0:0:0:77,0:2728,0:-245.469,-23.1793,0,-245.469,-23.1793,-245.469	1/1:145:0,145,0:0:0:145,0:5098,0:-458.921,-43.6494,0,-458.921,-43.6494,-458.921	1/1:54:0,54,0:0:0:54,0:1907,0:-171.82,-16.2556,0,-171.82,-16.2556,-171.82	1/2:237:0,107,130:0:0:107,130:3755,4592:-679.766,-374.316,-342.106,-305.802,0,-266.668	1/1:178:0,178,0:0:0:178,0:6224,0:-560.131,-53.5833,0,-560.131,-53.5833,-560.131	1/1:38:0,38,0:0:0:38,0:1324,0:-119.348,-11.4391,0,-119.348,-11.4391,-119.348	1/1:236:0,234,1:0:0:234,1:8235,36:-739.839,-70.441,0,-736.902,-67.4385,-736.6	1/1:107:0,106,1:0:0:106,1:3716,36:-334.24,-31.9092,0,-331.302,-28.6119,-331.001	1/1:177:0,176,0:0:0:176,0:6183,0:-556.157,-52.9813,0,-556.157,-52.9813,-556.157	1/2:5:0,1,4:0:0:1,4:36,129:-13.6685,-10.7235,-10.4225,-3.29724,0,-2.09312	1/2:19:0,15,4:0:0:15,4:515,140:-53.4388,-11.7405,-7.22501,-42.0466,0,-40.8425	1/1:4:0,4,0:0:0:4,0:137,0:-12.6676,-1.20412,0,-12.6676,-1.20412,-12.6676	1/1:10:0,10,0:0:0:10,0:358,0:-32.5629,-3.0103,0,-32.5629,-3.0103,-32.5629	1/1:11:0,11,0:0:0:11,0:374,0:-33.9813,-3.31133,0,-33.9813,-3.31133,-33.9813	1/1:226:0,225,0:0:0:225,0:7920,0:-712.304,-67.7318,0,-712.304,-67.7318,-712.304	1/1:149:0,149,0:0:0:149,0:5254,0:-472.786,-44.8535,0,-472.786,-44.8535,-472.786	1/2:65:0,29,36:0:0:29,36:1019,1275:-187.085,-104.185,-95.4556,-83.252,0,-72.4149	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:96:0,40,56:0:0:40,56:1415,1992:-277.944,-162.697,-150.655,-115.602,0,-98.7439	1/2:42:0,27,15:0:0:27,15:969,527:-121.796,-43.2447,-35.1169,-78.904,0,-74.3885	1/1:134:0,132,0:0:0:132,0:4667,0:-419.819,-39.736,0,-419.819,-39.736,-419.819	1/1:115:0,115,0:0:0:115,0:4118,0:-370.769,-34.6185,0,-370.769,-34.6185,-370.769	1/1:55:0,54,0:0:0:54,0:1903,0:-171.175,-16.2556,0,-171.175,-16.2556,-171.175	1/1:118:0,118,0:0:0:118,0:4159,0:-374.39,-35.5215,0,-374.39,-35.5215,-374.39	1/1:104:0,104,0:0:0:104,0:3661,0:-329.68,-31.3071,0,-329.68,-31.3071,-329.68	1/1:98:0,98,0:0:0:98,0:3427,0:-308.629,-29.5009,0,-308.629,-29.5009,-308.629	1/1:92:0,90,0:0:0:90,0:3168,0:-284.993,-27.0927,0,-284.993,-27.0927,-284.993	1/2:113:0,58,54:0:0:58,54:2057,1908:-322.942,-155.382,-137.923,-167.553,0,-151.298	1/1:110:0,110,0:0:0:110,0:3876,0:-348.866,-33.1133,0,-348.866,-33.1133,-348.866	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/2:103:0,54,48:0:0:54,48:1900,1692:-292.05,-137.757,-121.501,-154.285,0,-139.836	1/1:28:0,28,0:0:0:28,0:969,0:-87.5188,-8.42884,0,-87.5188,-8.42884,-87.5188	1/1:12:0,12,0:0:0:12,0:425,0:-38.5723,-3.61236,0,-38.5723,-3.61236,-38.5723	1/2:96:0,65,31:0:0:65,31:2279,1080:-273.605,-88.1738,-68.6069,-185.78,0,-176.448	1/2:45:0,12,31:0:0:12,31:427,1100:-124.419,-89.6188,-86.00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chr03	22199612	.	T	C	32807.4	PASS	AB=0.627417;ABP=411.394;AC=26;AF=0.138298;AN=188;AO=1833;CIGAR=1X;DP=10024;DPB=10024;DPRA=1.17678;EPP=3983.32;EPPR=17780.9;GTI=3;LEN=1;MEANALT=1.06897;MQM=55.5979;MQMR=59.9478;NS=94;NUMALT=1;ODDS=0.144702;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65670;QR=293340;RO=8187;RPL=0;RPP=3983.32;RPPR=17780.9;RPR=1833;RUN=1;SAF=1833;SAP=3983.32;SAR=0;SRF=8187;SRP=17780.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:89:19,70:19:684:70:2512:-198.438,0,-35.0987	0/1:135:44,91:44:1576:91:3264:-252.408,0,-101.484	0/1:195:75,120:75:2672:120:4304:-327.787,0,-182.025	0/0:319:319,0:319:11436:0:0:0,-96.0286,-1028.91	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/0:145:145,0:145:5185:0:0:0,-43.6493,-466.785	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.826	0/1:132:59,73:59:2120:73:2620:-196.16,0,-151.333	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:76:25,51:25:896:51:1832:-141.863,0,-58.0821	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.061	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.646	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:18:10,8:10:360:8:288:-20.8023,0,-27.3258	0/0:136:136,0:136:4880:0:0:0,-40.9401,-439.348	0/0:303:303,0:303:10856:0:0:0,-91.2121,-976.922	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.089	0/0:170:168,2:168:6028:2:72:0,-44.3392,-535.787	0/0:74:74,0:74:2637:0:0:0,-22.2762,-237.576	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:418:142,275:142:5088:275:9848:-760.118,0,-332.174	0/0:265:265,0:265:9524:0:0:0,-79.7729,-857.106	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:419:419,0:419:14977:0:0:0,-126.132,-1347.66	0/0:188:175,13:175:6238:13:468:0,-14.3339,-519.238	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.361	0/1:5:2,3:2:72:3:104:-8.19092,0,-5.33157	0/1:9:2,7:2:72:7:252:-20.1695,0,-4.12745	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:133:133,0:133:4764:0:0:0,-40.037,-428.917	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/1:31:21,10:21:756:10:356:-23.0023,0,-59.0353	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:170:72,98:72:2580:98:3524:-265.474,0,-181.274	0/1:11:4,7:4:144:7:252:-19.6358,0,-10.0023	0/0:133:133,0:133:4768:0:0:0,-40.037,-429.272	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.273	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.349	0/0:121:121,0:121:4348:0:0:0,-36.4246,-391.492	0/0:211:211,0:211:7560:0:0:0,-63.5173,-680.381	0/0:95:95,0:95:3397:0:0:0,-28.5978,-305.943	0/1:171:87,84:87:3116:84:3005:-218.003,0,-229.189	0/0:75:74,0:74:2648:0:0:0,-22.2762,-238.121	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:113:35,78:35:1248:78:2792:-216.519,0,-78.6085	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.395	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:185:106,79:106:3796:79:2836:-199.422,0,-286.143	0/1:62:20,42:20:720:42:1500:-116.379,0,-46.4649	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:31:6,25:6:212:25:896:-71.6222,0,-10.0929	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.067	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:366:366,0:366:13120:0:0:0,-110.177,-1180.6	0/0:197:196,1:196:7032:1:32:0,-56.1046,-629.724	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/0:111:111,0:111:3973:0:0:0,-33.4143,-357.754	0/0:248:248,0:248:8877:0:0:0,-74.6554,-798.913	0/1:248:54,192:54:1936:192:6877:-543.588,0,-100.047	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.42	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.078	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:139:139,0:139:4968:0:0:0,-41.8432,-447.262	0/0:324:324,0:324:11592:0:0:0,-97.5337,-1043.12	0/1:191:22,169:22:780:169:6048:-485.257,0,-12.8962	0/1:186:97,89:97:3472:89:3192:-230.677,0,-256.7	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:153:153,0:153:5496:0:0:0,-46.0576,-494.76	0/0:147:147,0:147:5261:0:0:0,-44.2514,-473.596	0/0:230:230,0:230:8240:0:0:0,-69.2369,-741.609	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:68:21,47:21:756:47:1688:-131.584,0,-47.8972	0/1:56:27,29:27:972:29:1036:-76.64,0,-70.9402	0/1:122:56,66:56:2016:66:2368:-176.523,0,-144.987	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5548	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:38:15,23:15:536:23:812:-61.6547,0,-37.1357	0/1:75:33,42:33:1188:42:1500:-112.415,0,-84.6513	0/1:61:22,39:22:792:39:1392:-107.172,0,-53.2428	0/0:289:289,0:289:10376:0:0:0,-86.9977,-933.752	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.901
chr03	22199667	.	G	T	48520.2	PASS	AB=0.73069;ABP=1798.37;AC=26;AF=0.138298;AN=188;AO=2875;CIGAR=1X;DP=10876;DPB=10876;DPRA=1.54211;EPP=6245.99;EPPR=17370.4;GTI=15;LEN=1;MEANALT=1.05556;MQM=40.5179;MQMR=59.975;NS=94;NUMALT=1;ODDS=1.11508;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102102;QR=277969;RO=7998;RPL=1833;RPP=475.584;RPPR=17361.8;RPR=1042;RUN=1;SAF=1833;SAP=475.584;SAR=1042;SRF=7997;SRP=17361.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:89:20,69:20:695:69:2445:-192.51,0,-36.0797	0/1:134:42,92:42:1438:92:3278:-254.047,0,-89.3721	0/1:190:71,119:71:2451:119:4214:-321.295,0,-163.647	0/0:316:316,0:316:10985:0:0:0,-95.1255,-988.475	0/0:19:19,0:19:653:0:0:0,-5.71957,-59.089	0/0:39:39,0:39:1366:0:0:0,-11.7402,-123.237	0/0:106:106,0:106:3677:0:0:0,-31.9092,-331.137	0/0:143:143,0:143:5045:0:0:0,-43.0473,-454.196	0/0:121:121,0:121:4234:0:0:0,-36.4246,-381.239	0/1:212:59,153:59:2056:153:5449:-275.581,0,-121.491	0/0:40:40,0:40:1329:0:0:0,-12.0412,-119.898	0/0:82:82,0:82:2802:0:0:0,-24.6845,-252.422	0/1:76:25,51:25:852:51:1800:-139.002,0,-54.112	0/0:45:44,1:44:1517:1:36:0,-9.94807,-133.221	0/0:73:73,0:73:2516:0:0:0,-21.9752,-226.689	0/0:46:46,0:46:1584:0:0:0,-13.8474,-142.847	0/0:40:40,0:40:1375:0:0:0,-12.0412,-124.043	0/0:26:26,0:26:906:0:0:0,-7.82678,-81.8535	0/1:18:10,8:10:356:8:288:-20.8023,0,-26.9627	0/0:133:133,0:133:4653:0:0:0,-40.037,-418.933	0/0:298:298,0:298:10409:0:0:0,-89.7069,-936.753	0/0:58:58,0:58:2045:0:0:0,-17.4597,-184.32	0/0:171:169,2:169:5893:2:68:0,-45.019,-524.03	0/0:73:73,0:73:2490:0:0:0,-21.9752,-224.353	0/0:42:42,0:42:1470:0:0:0,-12.6433,-132.593	0/1:605:133,472:133:4673:472:16748:-993.879,0,-238.611	0/0:260:260,0:260:9016:0:0:0,-78.2678,-811.441	0/0:26:26,0:26:889:0:0:0,-7.82678,-80.3202	0/0:410:410,0:410:14233:0:0:0,-123.422,-1280.78	0/0:189:170,19:170:5897:19:658:0,-10.8712,-484.831	0/0:98:98,0:98:3430:0:0:0,-29.5009,-308.916	0/1:11:2,9:2:72:9:320:-11.9768,0,-3.52539	0/1:17:2,15:2:72:15:540:-27.172,0,-1.71921	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:441:0:0:0,-3.91339,-40.0132	0/0:9:9,0:9:297:0:0:0,-2.70927,-27.0502	0/0:130:130,0:130:4496:0:0:0,-39.1339,-404.821	0/0:96:94,2:94:3259:2:72:0,-27.0007,-291.635	0/1:29:20,9:20:695:9:324:-20.7302,0,-54.1415	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:270:72,198:72:2518:198:7075:-317.221,0,-145.593	0/1:32:4,28:4:125:28:991:-30.8318,0,-1.92566	0/0:130:130,0:130:4503:0:0:0,-39.1339,-405.442	0/0:52:52,0:52:1798:0:0:0,-15.6536,-162.1	0/0:51:51,0:51:1765:0:0:0,-15.3525,-159.131	0/0:85:85,0:85:2926:0:0:0,-25.5875,-263.576	0/0:117:117,0:117:4134:0:0:0,-35.2205,-372.247	0/0:206:206,0:206:7196:0:0:0,-62.0122,-647.705	0/0:93:93,0:93:3257:0:0:0,-27.9958,-293.352	0/1:246:85,161:85:2954:161:5748:-293.221,0,-192.04	0/0:72:71,0:71:2464:0:0:0,-21.3731,-221.597	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/1:111:34,77:34:1182:77:2739:-212.065,0,-73.2662	0/0:77:77,0:77:2669:0:0:0,-23.1793,-240.453	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/1:271:102,169:102:3553:169:6024:-254.75,0,-238.398	0/1:123:19,104:19:671:104:3688:-179.108,0,-23.6891	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:46:6,40:6:208:40:1408:-89.7163,0,-5.2117	0/0:83:83,0:83:2881:0:0:0,-24.9855,-259.524	0/0:71:67,4:67:2323:4:144:0,-15.8354,-203.795	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:361:361,0:361:12667:0:0:0,-108.672,-1139.88	0/0:201:197,4:197:6889:4:144:0,-53.0278,-612.611	0/0:85:84,1:84:2955:1:36:0,-24.5885,-265.185	0/0:108:107,1:107:3693:1:36:0,-28.913,-328.977	0/0:243:242,1:242:8363:1:36:0,-71.6536,-751.204	0/1:383:53,330:53:1867:330:11715:-677.605,0,-53.0142	0/0:20:20,0:20:657:0:0:0,-6.0206,-59.4373	0/0:44:44,0:44:1541:0:0:0,-13.2453,-138.962	0/0:26:26,0:26:898:0:0:0,-7.82678,-80.3531	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:99:99,0:99:3389:0:0:0,-29.802,-305.229	0/0:99:99,0:99:3444:0:0:0,-29.802,-310.176	0/0:138:138,0:138:4770:0:0:0,-41.5421,-429.464	0/0:314:314,0:314:11021:0:0:0,-94.5234,-991.802	0/1:191:20,171:20:701:171:6036:-483.929,0,-5.915	0/1:181:95,85:95:3338:85:3047:-219.095,0,-246.094	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8171	0/0:148:148,0:148:5117:0:0:0,-44.5524,-460.684	0/0:139:139,0:139:4853:0:0:0,-41.8432,-436.925	0/0:226:224,2:224:7704:2:72:0,-65.6619,-691.041	0/0:46:46,0:46:1572:0:0:0,-13.8474,-141.764	0/1:103:20,82:20:683:82:2932:-169.418,0,-30.9244	0/1:84:25,59:25:854:59:2093:-107.869,0,-51.8854	0/1:197:54,143:54:1879:143:5063:-257.574,0,-110.086	0/0:25:25,0:25:861:0:0:0,-7.52575,-77.8023	0/0:52:52,0:52:1809:0:0:0,-15.6536,-163.089	0/0:49:49,0:49:1688:0:0:0,-14.7505,-152.201	0/1:52:15,37:15:505:37:1306:-67.6727,0,-30.1159	0/1:102:34,68:34:1156:68:2399:-125.4,0,-73.6324	0/1:111:22,89:22:780:89:3130:-164.514,0,-37.1087	0/0:281:281,0:281:9730:0:0:0,-84.5894,-875.673	0/0:89:89,0:89:3077:0:0:0,-26.7917,-277.16
chr03	22251155	.	G	A	25912.3	PASS	AB=0.505966;ABP=3.70982;AC=26;AF=0.139785;AN=186;AO=1158;CIGAR=1X;DP=7353;DPB=7353;DPRA=1.19314;EPP=2508.9;EPPR=13414;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=59.9947;NS=93;NUMALT=1;ODDS=0.839462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41156;QR=220590;RO=6192;RPL=593;RPP=4.48045;RPPR=5.1439;RPR=565;RUN=1;SAF=592;SAP=4.27793;SAR=566;SRF=3131;SRP=4.72868;SRR=3061;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:17,25:17:604:25:881:-66.9626,0,-42.0473	0/1:62:35,27:35:1256:27:972:-69.134,0,-94.6814	0/1:121:60,61:60:2124:61:2165:-158.691,0,-155.002	0/0:123:123,0:123:4403:0:0:0,-37.0267,-396.442	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.136	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:98:98,0:98:3515:0:0:0,-29.5009,-316.559	0/0:95:94,1:94:3353:1:36:0,-24.9996,-298.379	0/1:90:40,50:40:1436:50:1788:-134.11,0,-102.445	0/0:101:101,0:101:3559:0:0:0,-30.404,-320.517	0/0:193:192,0:192:6803:0:0:0,-57.7978,-612.075	0/1:147:73,74:73:2599:74:2637:-193.324,0,-189.907	0/0:117:117,0:117:4154:0:0:0,-35.2205,-374.043	0/0:142:142,0:142:5020:0:0:0,-42.7463,-451.946	0/0:123:122,0:122:4357:0:0:0,-36.7257,-391.944	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/0:74:74,0:74:2596:0:0:0,-22.2762,-233.884	0/1:54:19,35:19:684:35:1237:-95.3767,0,-45.6347	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:94:94,0:94:3361:0:0:0,-28.2968,-302.705	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:151:79,72:79:2832:72:2554:-184.652,0,-209.663	0/0:130:128,2:128:4596:2:72:0,-32.2972,-406.966	0/0:59:59,0:59:2088:0:0:0,-17.7608,-188.186	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/0:62:58,4:58:2055:4:144:0,-5.35024,-171.907	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:290:290,0:290:10343:0:0:0,-87.2987,-930.795	0/0:51:51,0:51:1810:0:0:0,-15.3525,-163.18	0/1:77:47,30:47:1692:30:1076:-73.9735,0,-129.388	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:114:52,62:52:1864:62:2204:-164.307,0,-133.722	0/1:48:23,25:23:828:25:887:-65.6987,0,-60.3947	0/0:140:140,0:140:4937:0:0:0,-42.1442,-444.459	0/0:131:131,0:131:4667:0:0:0,-39.4349,-420.191	0/0:131:131,0:131:4680:0:0:0,-39.4349,-421.362	0/0:61:60,0:60:2125:0:0:0,-18.0618,-191.157	0/0:76:76,0:76:2671:0:0:0,-22.8783,-240.635	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7865	0/1:83:33,50:33:1179:50:1800:-137.297,0,-81.4317	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:98:52,46:52:1856:46:1631:-117.577,0,-137.819	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:80:46,34:46:1622:34:1205:-84.6724,0,-122.183	0/1:48:20,28:20:716:28:1004:-76.2264,0,-50.3183	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/0:147:146,1:146:5203:1:36:0,-40.6531,-464.81	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.115	0/0:94:93,1:93:3316:1:36:0,-24.6985,-295.058	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:44:43,1:43:1532:1:36:0,-9.64704,-134.575	0/0:94:93,1:93:3328:1:36:0,-24.6985,-296.14	0/1:92:34,58:34:1224:58:2069:-158.784,0,-82.7723	0/0:81:80,1:80:2857:1:36:0,-20.7852,-253.768	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:82:82,0:82:2905:0:0:0,-24.6845,-261.686	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/0:68:67,1:67:2383:1:36:0,-16.8718,-211.129	0/0:128:128,0:128:4543:0:0:0,-38.5318,-409.038	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/1:95:48,47:48:1724:47:1677:-122.617,0,-126.848	0/1:92:57,35:57:2025:35:1251:-85.2002,0,-154.826	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.709	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:105:105,0:105:3758:0:0:0,-31.6081,-338.418	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:133:68,65:68:2440:65:2279:-165.331,0,-179.818	0/1:97:52,45:52:1860:45:1599:-115,0,-138.48	0/1:205:99,106:99:3507:106:3741:-275.179,0,-254.129	0/0:39:39,0:39:1364:0:0:0,-11.7402,-123.056	0/0:97:97,0:97:3453:0:0:0,-29.1999,-310.982	0/0:128:128,0:128:4554:0:0:0,-38.5318,-410.028	0/1:79:45,34:45:1597:34:1216:-85.9652,0,-120.237	0/1:136:67,69:67:2375:69:2449:-179.725,0,-173.065	0/1:102:46,56:46:1656:56:1974:-147.226,0,-118.623	0/0:76:76,0:76:2676:0:0:0,-22.8783,-241.082	0/0:240:240,0:240:8516:0:0:0,-72.2472,-766.44
chr03	22271076	.	G	A	14804.1	PASS	AB=0.50454;ABP=3.32579;AC=26;AF=0.139785;AN=186;AO=900;CIGAR=1X;DP=6523;DPB=6523;DPRA=0.992911;EPP=1957.34;EPPR=12182.8;GTI=1;LEN=1;MEANALT=1.09091;MQM=59.9022;MQMR=59.9795;NS=93;NUMALT=1;ODDS=0.632267;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32079;QR=198829;RO=5613;RPL=900;RPP=1957.34;RPPR=12182.8;RPR=0;RUN=1;SAF=900;SAP=1957.34;SAR=0;SRF=5613;SRP=12191.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:15,29:15:536:29:1025:-79.2704,0,-35.3295	0/1:46:28,15:28:968:15:540:-35.6324,0,-74.126	0/1:69:30,39:30:1072:39:1404:-105.888,0,-76.0214	0/0:138:138,0:138:4898:0:0:0,-41.5421,-440.973	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:18:18,0:18:626:0:0:0,-5.41854,-56.6633	0/0:120:120,0:120:4235:0:0:0,-36.1236,-381.33	0/0:81:80,1:80:2821:1:36:0,-20.7852,-250.532	0/0:128:128,0:128:4546:0:0:0,-38.5318,-409.304	0/1:76:44,32:44:1552:32:1137:-79.4407,0,-117.091	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/0:125:125,0:125:4328:0:0:0,-37.6287,-389.701	0/1:87:40,47:40:1428:47:1680:-125.298,0,-102.628	0/0:43:43,0:43:1508:0:0:0,-12.9443,-136.01	0/0:84:84,0:84:2944:0:0:0,-25.2865,-265.193	0/0:67:67,0:67:2375:0:0:0,-20.169,-214.008	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/0:126:125,0:125:4457:0:0:0,-37.6287,-400.94	0/0:123:123,0:123:4366:0:0:0,-37.0267,-393.114	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/0:78:78,0:78:2787:0:0:0,-23.4803,-251.07	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:73:73,0:73:2575:0:0:0,-21.9752,-231.998	0/1:212:116,96:116:4116:96:3444:-246.354,0,-306.807	0/0:200:200,0:200:7130:0:0:0,-60.206,-641.758	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:133:132,0:132:4687:0:0:0,-39.736,-421.711	0/0:91:90,1:90:3209:1:36:0,-23.7955,-285.433	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3376	0/1:12:10,2:10:360:2:68:-2.84535,0,-29.1319	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/0:191:191,0:191:6710:0:0:0,-57.4967,-603.983	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:32:13,19:13:435:19:671:-51.0828,0,-29.8356	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:110:62,47:62:2170:47:1676:-117.965,0,-162.372	0/1:33:18,15:18:632:15:536:-38.6408,0,-47.2728	0/0:98:98,0:98:3465:0:0:0,-29.5009,-312.064	0/0:55:55,0:55:1924:0:0:0,-16.5566,-173.435	0/0:53:53,0:53:1830:0:0:0,-15.9546,-164.977	0/0:122:121,0:121:4313:0:0:0,-36.4246,-387.963	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:135:135,0:135:4836:0:0:0,-40.639,-435.386	0/0:87:87,0:87:3088:0:0:0,-26.1896,-278.147	0/1:84:26,58:26:936:58:2045:-159.031,0,-59.2729	0/0:69:68,1:68:2436:1:36:0,-17.1728,-215.897	.:.:.:.:.:.:.:.	0/1:87:51,35:51:1820:35:1256:-87.0908,0,-137.872	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:73:34,39:34:1220:39:1400:-104.323,0,-88.1316	0/1:46:30,16:30:1072:16:576:-38.3276,0,-82.9451	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:103:102,1:102:3573:1:36:0,-27.4078,-318.182	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:135:135,0:135:4787:0:0:0,-40.639,-430.988	0/0:135:130,5:130:4634:5:180:0,-24.087,-400.672	0/0:32:31,1:31:1101:1:36:0,-6.03468,-95.8001	0/0:27:27,0:27:943:0:0:0,-8.12781,-85.1832	0/0:109:109,0:109:3888:0:0:0,-32.8123,-349.336	0/1:130:41,89:41:1420:89:3160:-245.488,0,-88.9562	0/0:31:30,1:30:1052:1:36:0,-5.73365,-91.3922	0/0:67:67,0:67:2383:0:0:0,-20.169,-214.728	0/0:56:56,0:56:1946:0:0:0,-16.8577,-175.413	0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8427	0/0:132:132,0:132:4707:0:0:0,-39.736,-423.789	0/0:79:79,0:79:2816:0:0:0,-23.7814,-253.68	0/0:71:71,0:71:2524:0:0:0,-21.3731,-227.413	0/0:94:92,0:92:3278:0:0:0,-27.6948,-294.88	0/1:61:29,32:29:1036:32:1128:-83.4205,0,-75.1911	0/1:104:59,45:59:2072:45:1612:-114.063,0,-155.444	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.53	0/0:89:89,0:89:3155:0:0:0,-26.7917,-284.177	0/0:58:58,0:58:2041:0:0:0,-17.4597,-183.961	0/1:81:41,40:41:1451:40:1440:-105.514,0,-106.502	0/1:47:28,19:28:988:19:680:-47.3808,0,-75.0855	0/1:130:54,76:54:1897:76:2728:-206.629,0,-131.872	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/0:69:69,0:69:2410:0:0:0,-20.7711,-217.158	0/0:77:77,0:77:2722:0:0:0,-23.1793,-245.224	0/1:29:21,8:21:735:8:284:-17.1735,0,-57.7415	0/1:70:42,28:42:1455:28:983:-67.7104,0,-110.169	0/1:54:20,34:20:700:34:1174:-89.7042,0,-47.0679	0/0:75:75,0:75:2654:0:0:0,-22.5772,-239.107	0/0:138:138,0:138:4878:0:0:0,-41.5421,-439.176
chr03	22370518	.	GGCGGG	GGTGGT,GGTGGG	68378.8	PASS	AB=0.588171,0.3954;ABP=64.6606,89.7764;AC=161,27;AF=0.856383,0.143617;AN=188;AO=3070,380;CIGAR=2M1X2M1X,2M1X3M;DP=3509;DPB=3509;DPRA=0,1.55089;EPP=6428.44,687.116;EPPR=0;GTI=6;LEN=6,1;MEANALT=1.98936,2.7;MQM=59.9619,60;MQMR=0;NS=94;NUMALT=2;ODDS=0.564998;PAIRED=0,0;PAIREDR=0;PAO=0.25,0.25;PQA=9,9;PQR=9;PRO=0.25;QA=99112,13104;QR=0;RO=0;RPL=28,18;RPP=6428.44,679.23;RPPR=0;RPR=3042,362;RUN=1,1;SAF=0,1;SAP=6669.43,819.507;SAR=3070,379;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,20,24:0:0:20,24:673,843:-123.173,-68.6502,-62.6296,-54.5517,0,-47.327	1/2:22:0,13,9:0:0:13,9:412,320:-59.5672,-26.4331,-22.5197,-33.4737,0,-30.7644	1/2:84:0,44,39:0:0:44,39:1463,1331:-226.498,-108.121,-94.8756,-118.49,0,-106.75	1/1:85:0,82,1:0:0:82,1:2684,32:-241.501,-24.6845,0,-238.923,-22.0994,-238.622	1/1:32:0,32,0:0:0:32,0:1048,0:-94.6164,-9.63296,0,-94.6164,-9.63296,-94.6164	1/1:11:0,11,0:0:0:11,0:371,0:-33.7145,-3.31133,0,-33.7145,-3.31133,-33.7145	1/1:45:0,45,0:0:0:45,0:1468,0:-132.406,-13.5464,0,-132.406,-13.5464,-132.406	1/1:28:0,28,0:0:0:28,0:912,0:-82.3793,-8.42884,0,-82.3793,-8.42884,-82.3793	1/1:55:0,52,0:0:0:52,0:1672,0:-150.447,-15.6536,0,-150.447,-15.6536,-150.447	1/2:28:0,15,12:0:0:15,12:489,402:-72.0056,-32.5315,-28.016,-39.4481,0,-35.8357	1/1:13:0,12,0:0:0:12,0:380,0:-34.1597,-3.61236,0,-34.1597,-3.61236,-34.1597	1/1:20:0,19,0:0:0:19,0:621,0:-55.9459,-5.71957,0,-55.9459,-5.71957,-55.9459	1/2:13:0,11,2:0:0:11,2:339,68:-33.0202,-5.85565,-2.54432,-27.4995,0,-26.8974	1/1:16:0,16,0:0:0:16,0:541,0:-49.0098,-4.81648,0,-49.0098,-4.81648,-49.0098	1/1:11:0,11,0:0:0:11,0:370,0:-33.6238,-3.31133,0,-33.6238,-3.31133,-33.6238	1/1:12:0,12,0:0:0:12,0:407,0:-36.9552,-3.61236,0,-36.9552,-3.61236,-36.9552	1/1:11:0,11,0:0:0:11,0:365,0:-33.1706,-3.31133,0,-33.1706,-3.31133,-33.1706	1/1:12:0,12,0:0:0:12,0:411,0:-37.3176,-3.61236,0,-37.3176,-3.61236,-37.3176	1/2:7:0,6,1:0:0:6,1:187,36:-18.2756,-3.29724,-1.49106,-15.3313,0,-15.0302	1/1:96:0,95,0:0:0:95,0:3115,0:-280.296,-28.5979,0,-280.296,-28.5979,-280.296	1/1:49:0,49,0:0:0:49,0:1545,0:-139.317,-14.7505,0,-139.317,-14.7505,-139.317	1/1:55:0,53,0:0:0:53,0:1733,0:-155.944,-15.9546,0,-155.944,-15.9546,-155.944	1/1:66:0,65,1:0:0:65,1:2018,32:-181.547,-19.567,0,-178.968,-16.6687,-178.667	1/1:81:0,77,3:0:0:77,3:2499,100:-224.851,-23.1793,0,-216.756,-15.0228,-215.853	1/1:47:0,47,0:0:0:47,0:1522,0:-137.26,-14.1484,0,-137.26,-14.1484,-137.26	1/2:91:0,52,39:0:0:52,39:1654,1364:-244.465,-111.318,-95.6647,-133.482,0,-121.742	1/1:144:0,138,3:0:0:138,3:4478,96:-402.903,-41.5421,0,-395.169,-33.8051,-394.266	1/1:4:0,4,0:0:0:4,0:125,0:-11.5594,-1.20412,0,-11.5594,-1.20412,-11.5594	1/1:137:0,134,2:0:0:134,2:4348,72:-391.199,-40.338,0,-385.323,-34.39,-384.721	1/1:78:0,77,1:0:0:77,1:2439,32:-219.43,-23.1793,0,-216.852,-20.281,-216.551	1/1:49:0,48,0:0:0:48,0:1516,0:-136.419,-14.4494,0,-136.419,-14.4494,-136.419	1/2:4:0,3,1:0:0:3,1:107,36:-12.0173,-3.29724,-2.39415,-9.07908,0,-8.77805	1/2:17:0,11,5:0:0:11,5:326,167:-39.6239,-13.6143,-10.303,-26.0916,0,-24.5864	1/1:4:0,4,0:0:0:4,0:109,0:-10.0814,-1.20412,0,-10.0814,-1.20412,-10.0814	1/2:8:0,7,1:0:0:7,1:226,36:-21.4914,-3.29724,-1.19003,-18.5493,0,-18.2483	1/1:15:0,15,0:0:0:15,0:499,0:-45.2275,-4.51545,0,-45.2275,-4.51545,-45.2275	1/1:38:0,38,0:0:0:38,0:1256,0:-113.334,-11.4391,0,-113.334,-11.4391,-113.334	1/1:50:0,50,0:0:0:50,0:1616,0:-145.72,-15.0515,0,-145.72,-15.0515,-145.72	1/1:9:0,9,0:0:0:9,0:296,0:-26.9608,-2.70927,0,-26.9608,-2.70927,-26.9608	1/1:2:0,2,0:0:0:2,0:71,0:-6.74206,-0.60206,0,-6.74206,-0.60206,-6.74206	1/2:104:0,66,36:0:0:66,36:2032,1236:-263.354,-100.41,-80.5416,-162.983,0,-152.146	1/2:10:0,8,2:0:0:8,2:266,71:-27.6456,-6.14,-3.73176,-21.856,0,-21.2539	1/1:63:0,63,0:0:0:63,0:2037,0:-183.595,-18.9649,0,-183.595,-18.9649,-183.595	1/1:10:0,10,0:0:0:10,0:337,0:-30.6562,-3.0103,0,-30.6562,-3.0103,-30.6562	1/1:11:0,10,0:0:0:10,0:332,0:-29.9534,-3.0103,0,-29.9534,-3.0103,-29.9534	1/1:78:0,77,0:0:0:77,0:2504,0:-225.366,-23.1793,0,-225.366,-23.1793,-225.366	1/1:35:0,35,0:0:0:35,0:1131,0:-102.083,-10.5361,0,-102.083,-10.5361,-102.083	1/1:61:0,59,0:0:0:59,0:1878,0:-169.03,-17.7608,0,-169.03,-17.7608,-169.03	1/1:64:0,60,0:0:0:60,0:1946,0:-175.098,-18.0618,0,-175.098,-18.0618,-175.098	1/2:26:0,20,5:0:0:20,5:650,168:-66.1836,-13.7145,-7.69393,-52.5706,0,-51.0654	1/1:75:0,70,2:0:0:70,2:2252,68:-202.635,-21.0721,0,-197.119,-15.535,-196.517	1/1:7:0,7,0:0:0:7,0:234,0:-21.3868,-2.10721,0,-21.3868,-2.10721,-21.3868	1/2:139:0,80,58:0:0:80,58:2569,2016:-370.959,-163.914,-139.832,-207.041,0,-189.581	1/1:16:0,16,0:0:0:16,0:518,0:-46.9288,-4.81648,0,-46.9288,-4.81648,-46.9288	1/1:6:0,6,0:0:0:6,0:192,0:-17.595,-1.80618,0,-17.595,-1.80618,-17.595	1/2:27:0,19,8:0:0:19,8:614,276:-72.2747,-22.767,-17.0474,-49.8461,0,-47.4379	1/2:32:0,14,17:0:0:14,17:444,596:-84.2208,-48.5004,-44.286,-35.7044,0,-30.5869	1/1:9:0,9,0:0:0:9,0:288,0:-26.2316,-2.70927,0,-26.2316,-2.70927,-26.2316	1/2:5:0,3,2:0:0:3,2:94,68:-13.3943,-5.85565,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chr03	22478688	.	G	A	39508.7	PASS	AB=0.501438;ABP=3.07273;AC=28;AF=0.148936;AN=188;AO=1760;CIGAR=1X;DP=12739;DPB=12739;DPRA=1.16319;EPP=3824.8;EPPR=23837.1;GTI=1;LEN=1;MEANALT=1.02564;MQM=59.9909;MQMR=59.9876;NS=94;NUMALT=1;ODDS=0.817228;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62529;QR=388773;RO=10976;RPL=959;RPP=33.8107;RPPR=565.384;RPR=801;RUN=1;SAF=959;SAP=33.8107;SAR=801;SRF=6331;SRP=565.384;SRR=4645;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:76:34,42:34:1208:42:1486:-111.155,0,-86.1478	0/1:123:74,49:74:2639:49:1729:-118.866,0,-200.73	0/1:137:78,59:78:2785:59:2108:-148.748,0,-209.648	0/0:306:306,0:306:10801:0:0:0,-92.1152,-971.993	0/0:119:119,0:119:4227:0:0:0,-35.8226,-380.61	0/0:65:65,0:65:2307:0:0:0,-19.5669,-207.891	0/0:99:99,0:99:3503:0:0:0,-29.802,-315.481	0/0:247:247,0:247:8740:0:0:0,-74.3544,-786.545	0/0:242:242,0:242:8627:0:0:0,-72.8493,-776.411	0/1:119:57,62:57:2043:62:2216:-163.882,0,-148.319	0/0:84:84,0:84:2994:0:0:0,-25.2865,-269.691	0/0:195:195,0:195:6898:0:0:0,-58.7008,-620.825	0/1:131:59,72:59:2069:72:2568:-191.935,0,-147.045	0/0:129:128,1:128:4516:1:36:0,-35.2346,-403.012	0/0:114:114,0:114:3964:0:0:0,-34.3174,-356.955	0/0:91:91,0:91:3187:0:0:0,-27.3937,-287.053	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.849	0/0:65:65,0:65:2254:0:0:0,-19.5669,-203.121	0/1:60:20,40:20:703:40:1406:-108.773,0,-45.5317	0/0:207:207,0:207:7376:0:0:0,-62.3132,-663.89	0/0:289:289,0:289:10272:0:0:0,-86.9977,-924.414	0/0:119:119,0:119:4238:0:0:0,-35.8226,-381.598	0/0:227:227,0:227:8039:0:0:0,-68.3338,-723.536	0/0:71:71,0:71:2504:0:0:0,-21.3731,-225.612	0/0:132:132,0:132:4704:0:0:0,-39.736,-423.522	0/1:421:209,212:209:7419:212:7528:-550.83,0,-541.025	0/0:292:292,0:292:10328:0:0:0,-87.9008,-929.452	0/0:62:61,0:61:2152:0:0:0,-18.3628,-193.714	0/0:318:316,2:316:11222:2:72:0,-88.8908,-1003.04	0/0:141:138,3:138:4924:3:95:0,-33.581,-434.446	0/0:185:185,0:185:6576:0:0:0,-55.6905,-591.925	0/1:9:7,2:7:252:2:68:-3.74844,0,-20.3197	0/1:21:9,12:9:302:12:428:-32.5372,0,-21.1835	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:25:25,0:25:870:0:0:0,-7.52575,-78.6146	0/0:369:369,0:369:13013:0:0:0,-111.08,-1171	0/0:159:159,0:159:5572:0:0:0,-47.8638,-501.608	0/1:95:44,51:44:1513:51:1823:-135.753,0,-107.859	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:167:101,66:101:3605:66:2357:-162.115,0,-274.383	0/1:61:34,27:34:1198:27:960:-68.3534,0,-89.7612	0/0:251:250,1:250:8899:1:36:0,-71.9603,-797.299	0/0:120:120,0:120:4267:0:0:0,-36.1236,-384.209	0/0:88:88,0:88:3072:0:0:0,-26.4906,-276.709	0/0:133:133,0:133:4726:0:0:0,-40.037,-425.502	0/0:136:135,1:135:4797:1:36:0,-37.3418,-428.287	0/0:256:255,0:255:9038:0:0:0,-76.7626,-813.044	0/0:86:86,0:86:3031:0:0:0,-25.8886,-273.02	0/1:156:74,82:74:2622:82:2923:-216.344,0,-189.267	0/0:124:124,0:124:4410:0:0:0,-37.3277,-397.074	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/1:74:24,50:24:864:50:1754:-135.864,0,-55.8063	0/0:131:131,0:131:4665:0:0:0,-39.4349,-420.012	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:219:124,95:124:4425:95:3376:-238.13,0,-332.496	0/1:41:13,28:13:468:28:1004:-78.3336,0,-30.1174	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9546	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/0:129:129,0:129:4599:0:0:0,-38.8329,-414.076	0/0:133:131,2:131:4631:2:72:0,-33.2003,-410.12	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:225:224,1:224:7958:1:36:0,-64.1335,-712.647	0/0:309:307,2:307:10928:2:72:0,-86.1815,-976.586	0/0:103:103,0:103:3622:0:0:0,-31.0061,-326.187	0/0:119:119,0:119:4230:0:0:0,-35.8226,-380.882	0/0:259:258,1:258:9150:1:36:0,-74.3685,-819.831	0/1:180:55,125:55:1936:125:4451:-346.576,0,-119.551	0/0:106:106,0:106:3713:0:0:0,-31.9092,-334.374	0/0:84:84,0:84:2958:0:0:0,-25.2865,-266.453	0/0:78:78,0:78:2769:0:0:0,-23.4803,-249.451	0/0:50:50,0:50:1772:0:0:0,-15.0515,-159.76	0/1:137:82,55:82:2882:55:1964:-135.794,0,-218.375	0/0:126:126,0:126:4481:0:0:0,-37.9298,-403.46	0/0:248:247,1:247:8752:1:36:0,-71.0572,-784.077	0/0:131:130,1:130:4551:1:36:0,-35.8367,-406.161	0/1:160:89,70:89:3173:70:2471:-174.417,0,-237.57	0/1:166:87,79:87:3087:79:2828:-204.788,0,-228.088	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:132:132,0:132:4706:0:0:0,-39.736,-423.701	0/0:164:164,0:164:5853:0:0:0,-49.3689,-526.882	0/0:306:306,0:306:10870:0:0:0,-92.1152,-978.207	0/0:92:92,0:92:3236:0:0:0,-27.6948,-291.464	0/1:125:60,65:60:2123:65:2305:-170.081,0,-153.71	0/1:124:66,58:66:2300:58:2044:-146.903,0,-169.933	0/1:265:136,129:136:4783:129:4567:-331.425,0,-350.856	0/0:40:40,0:40:1419:0:0:0,-12.0412,-128.007	0/0:146:146,0:146:5145:0:0:0,-43.9504,-463.197	0/0:140:140,0:140:4913:0:0:0,-42.1442,-442.323	0/1:78:41,37:41:1430:37:1309:-94.6292,0,-105.514	0/1:151:81,70:81:2871:70:2483:-178.264,0,-213.17	0/1:143:49,94:49:1747:94:3342:-257.95,0,-114.466	0/0:77:77,0:77:2709:0:0:0,-23.1793,-244.052	0/0:202:202,0:202:7142:0:0:0,-60.8081,-642.843
chr03	22487070	.	C	T	33814.2	PASS	AB=0.479443;ABP=14.6162;AC=27;AF=0.143617;AN=188;AO=1533;CIGAR=1X;DP=10891;DPB=10891;DPRA=1.27836;EPP=3314.53;EPPR=20295.4;GTI=0;LEN=1;MEANALT=1.02632;MQM=59.9909;MQMR=59.9964;NS=94;NUMALT=1;ODDS=7.34197;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54240;QR=329553;RO=9349;RPL=764;RPP=3.04571;RPPR=100.24;RPR=769;RUN=1;SAF=762;SAP=3.12504;SAR=771;SRF=4350;SRP=100.842;SRR=4999;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:16,24:16:564:24:838:-63.3368,0,-38.6901	0/1:116:67,49:67:2342:49:1752:-123.045,0,-176.115	0/1:218:135,83:135:4790:83:2899:-195.519,0,-365.635	0/0:253:253,0:253:8942:0:0:0,-76.1606,-804.772	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/0:15:15,0:15:518:0:0:0,-4.51545,-46.9455	0/0:105:104,1:104:3652:1:36:0,-28.0099,-325.285	0/0:208:207,1:207:7307:1:36:0,-59.016,-654.091	0/0:150:150,0:150:5266:0:0:0,-45.1545,-474.082	0/1:135:54,81:54:1895:81:2868:-217.717,0,-130.186	0/0:113:113,0:113:3916:0:0:0,-34.0164,-352.633	0/0:253:253,0:253:8912:0:0:0,-76.1606,-802.076	0/1:184:96,88:96:3378:88:3093:-223.21,0,-248.847	0/0:175:175,0:175:6126:0:0:0,-52.6802,-551.452	0/0:161:161,0:161:5679:0:0:0,-48.4658,-511.234	0/0:151:151,0:151:5326:0:0:0,-45.4555,-479.477	0/0:118:118,0:118:4146:0:0:0,-35.5215,-373.327	0/0:76:76,0:76:2658:0:0:0,-22.8783,-239.463	0/1:97:55,42:55:1889:42:1483:-104.564,0,-141.084	0/0:159:157,2:157:5568:2:72:0,-41.027,-494.411	0/0:208:207,1:207:7398:1:36:0,-59.016,-662.269	0/0:35:34,0:34:1202:0:0:0,-10.235,-108.125	0/0:113:112,0:112:3935:0:0:0,-33.7154,-353.979	0/0:70:69,1:69:2435:1:36:0,-17.4738,-215.808	0/0:30:30,0:30:1036:0:0:0,-9.0309,-93.5459	0/1:260:132,128:132:4681:128:4560:-332.301,0,-343.181	0/0:221:221,0:221:7872:0:0:0,-66.5276,-708.51	0/0:59:59,0:59:2091:0:0:0,-17.7608,-188.46	0/0:286:286,0:286:10209:0:0:0,-86.0946,-918.741	0/0:94:89,5:89:3156:5:172:0,-12.4788,-268.447	0/0:103:102,1:102:3625:1:36:0,-27.4078,-322.857	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:14:14,0:14:478:0:0:0,-4.21442,-43.3441	0/0:336:336,0:336:11751:0:0:0,-101.146,-1057.48	0/0:55:55,0:55:1942:0:0:0,-16.5566,-175.055	0/1:103:51,52:51:1770:52:1830:-133.973,0,-128.573	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:117:75,42:75:2655:42:1457:-96.2027,0,-203.977	0/1:54:29,25:29:1020:25:885:-63.7109,0,-75.8565	0/0:113:113,0:113:3996:0:0:0,-34.0164,-359.832	0/0:101:101,0:101:3591:0:0:0,-30.404,-323.398	0/0:117:117,0:117:4102:0:0:0,-35.2205,-369.37	0/0:98:98,0:98:3446:0:0:0,-29.5009,-310.354	0/0:86:86,0:86:3035:0:0:0,-25.8886,-273.38	0/0:225:224,0:224:7960:0:0:0,-67.4307,-716.066	0/0:108:108,0:108:3809:0:0:0,-32.5112,-343.008	0/1:127:60,67:60:2132:67:2391:-177.217,0,-153.918	0/0:91:90,0:90:3153:0:0:0,-27.0927,-283.653	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:103:55,48:55:1959:48:1694:-121.739,0,-145.579	0/0:67:66,0:66:2338:0:0:0,-19.868,-210.319	0/1:13:3,10:3:108:10:348:-27.7417,0,-6.16178	0/1:158:84,74:84:2932:74:2631:-189.475,0,-216.552	0/1:20:10,10:10:360:10:352:-25.997,0,-26.7237	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:23:14,9:14:496:9:324:-22.5822,0,-38.0506	0/0:153:152,0:152:5381:0:0:0,-45.7566,-484.203	0/0:161:161,0:161:5660:0:0:0,-48.4658,-509.522	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:69:69,0:69:2453:0:0:0,-20.7711,-221.023	0/0:213:212,1:212:7552:1:36:0,-60.5211,-676.125	0/0:106:106,0:106:3749:0:0:0,-31.9092,-337.61	0/0:67:67,0:67:2375:0:0:0,-20.169,-214.008	0/0:159:159,0:159:5648:0:0:0,-47.8638,-508.44	0/1:123:41,82:41:1438:82:2903:-224.481,0,-92.6876	0/0:105:105,0:105:3705:0:0:0,-31.6081,-333.655	0/0:79:79,0:79:2773:0:0:0,-23.7814,-249.81	0/0:82:82,0:82:2875:0:0:0,-24.6845,-258.987	0/0:37:37,0:37:1225:0:0:0,-11.1381,-110.538	0/1:108:72,36:72:2553:36:1280:-82.992,0,-197.508	0/0:145:145,0:145:5096:0:0:0,-43.6493,-458.789	0/0:219:218,1:218:7640:1:36:0,-62.3273,-684.048	0/0:260:258,2:258:9200:2:72:0,-71.4311,-821.134	0/1:37:17,20:17:603:20:712:-53.2685,0,-43.4614	0/1:180:93,87:93:3240:87:3091:-224.231,0,-237.633	0/0:24:24,0:24:841:0:0:0,-7.22472,-76.0064	0/0:140:140,0:140:4900:0:0:0,-42.1442,-441.157	0/0:174:173,0:173:6149:0:0:0,-52.0782,-553.153	0/0:258:257,1:257:9111:1:36:0,-74.0675,-816.374	0/0:75:75,0:75:2627:0:0:0,-22.5772,-236.676	0/1:175:94,81:94:3278:81:2868:-205.679,0,-242.56	0/1:114:55,59:55:1882:59:2100:-154.952,0,-135.333	0/1:228:127,101:127:4447:101:3598:-255.393,0,-331.766	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.859	0/0:145:145,0:145:5050:0:0:0,-43.6493,-454.65	0/0:145:145,0:145:5114:0:0:0,-43.6493,-460.408	0/1:109:65,44:65:2231:44:1563:-108.149,0,-168.239	0/1:188:105,83:105:3687:83:2958:-209.86,0,-275.442	0/1:124:36,88:36:1264:88:3050:-237.4,0,-76.7321	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:237:237,0:237:8268:0:0:0,-71.3441,-744.134
chr03	22505363	.	AG	GT,GG	235151	PASS	AB=0.367442,0.630814;ABP=528.042,514.316;AC=155,31;AF=0.833333,0.166667;AN=186;AO=7025,2283;CIGAR=2X,1X1M;DP=9328;DPB=9341.5;DPRA=16.8877,1.39987;EPP=15248.9,4960.48;EPPR=5.18177;GTI=10;LEN=2,1;MEANALT=1.63043,2.14634;MQM=59.7342,59.9877;MQMR=60;NS=93;NUMALT=2;ODDS=12253.9;PAIRED=0,0;PAIREDR=0;PAO=13,13;PQA=456,456;PQR=0;PRO=0;QA=247689,80108;QR=36;RO=1;RPL=848,1029;RPP=8781.09,51.1622;RPPR=5.18177;RPR=6177,1254;RUN=1,1;SAF=847,1029;SAP=8787.68,51.1622;SAR=6178,1254;SRF=0;SRP=5.18177;SRR=1;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,4,39:0:0:4,39:144,1362:-122.885,-111.134,-109.93,-12.1095,0,-0.369327	1/2:147:0,65,82:0:0:65,82:2291,2913:-424.221,-237.72,-218.153,-186.855,0,-162.17	1/2:183:0,36,147:0:0:36,147:1275,5178:-525.609,-421.855,-411.018,-104.049,0,-59.7976	1/1:98:0,97,1:0:0:97,1:3414,36:-307.112,-29.1999,0,-304.175,-25.9027,-303.874	1/1:62:0,62,0:0:0:62,0:2163,0:-194.927,-18.6639,0,-194.927,-18.6639,-194.927	1/1:69:0,69,0:0:0:69,0:2423,0:-218.323,-20.7711,0,-218.323,-20.7711,-218.323	1/1:81:0,80,1:0:0:80,1:2810,36:-252.744,-24.0824,0,-249.807,-20.7852,-249.506	1/1:126:0,125,0:0:0:125,0:4374,0:-393.335,-37.6288,0,-393.335,-37.6288,-393.335	1/1:17:0,16,1:0:0:16,1:558,36:-50.1307,-4.81648,0,-47.1929,-1.51924,-46.8918	1/2:142:1,48,93:1:36:48,93:1669,3227:-394.2,-259.302,-247.79,-132.19,0,-107.132	1/1:112:0,112,0:0:0:112,0:3956,0:-356.212,-33.7154,0,-356.212,-33.7154,-356.212	1/1:85:0,85,0:0:0:85,0:2990,0:-269.27,-25.5876,0,-269.27,-25.5876,-269.27	1/2:139:0,48,91:0:0:48,91:1676,3154:-393.013,-256.693,-242.243,-136.669,0,-109.275	1/1:121:0,120,0:0:0:120,0:4173,0:-375.307,-36.1236,0,-375.307,-36.1236,-375.307	1/1:81:0,81,0:0:0:81,0:2894,0:-260.678,-24.3834,0,-260.678,-24.3834,-260.678	1/1:74:0,73,1:0:0:73,1:2582,36:-232.217,-21.9752,0,-229.279,-18.6779,-228.978	1/1:108:0,107,1:0:0:107,1:3704,36:-333.199,-32.2102,0,-330.261,-28.913,-329.96	1/1:85:0,85,0:0:0:85,0:3030,0:-272.83,-25.5876,0,-272.83,-25.5876,-272.83	1/2:59:0,12,47:0:0:12,47:421,1653:-169.168,-134.907,-131.295,-34.6111,0,-20.4627	1/1:141:0,140,0:0:0:140,0:4970,0:-447.056,-42.1442,0,-447.056,-42.1442,-447.056	1/1:68:0,68,0:0:0:68,0:2399,0:-216.155,-20.47,0,-216.155,-20.47,-216.155	1/1:99:0,99,0:0:0:99,0:3523,0:-317.246,-29.802,0,-317.246,-29.802,-317.246	1/1:22:0,20,2:0:0:20,2:696,68:-62.5456,-6.0206,0,-57.0305,-0.164952,-56.4285	1/1:58:0,58,0:0:0:58,0:2080,0:-187.466,-17.4597,0,-187.466,-17.4597,-187.466	1/1:34:0,33,0:0:0:33,0:1186,0:-106.738,-9.93399,0,-106.738,-9.93399,-106.738	1/2:395:0,200,195:0:0:200,195:7037,6843:-1130.09,-557.247,-497.041,-573.192,0,-514.491	1/1:104:0,104,0:0:0:104,0:3667,0:-330.026,-31.3071,0,-330.026,-31.3071,-330.026	1/2:61:0,15,46:0:0:15,46:538,1596:-173.963,-130.079,-125.563,-44.2403,0,-30.393	1/1:253:0,253,0:0:0:253,0:8960,0:-806.238,-76.1606,0,-806.238,-76.1606,-806.238	1/1:105:0,100,5:0:0:100,5:3528,176:-317.312,-30.103,0,-302.984,-15.4231,-301.479	1/1:36:0,36,0:0:0:36,0:1285,0:-115.943,-10.8371,0,-115.943,-10.8371,-115.943	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/2:8:0,1,7:0:0:1,7:36,252:-23.8592,-20.9217,-20.6207,-3.29724,0,-1.19003	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	.:.:.:.:.:.:.:.	1/1:2:0,2,0:0:0:2,0:70,0:-6.64733,-0.60206,0,-6.64733,-0.60206,-6.64733	1/1:425:0,423,0:0:0:423,0:14857,0:-1336.44,-127.336,0,-1336.44,-127.336,-1336.44	1/1:99:0,98,0:0:0:98,0:3404,0:-306.342,-29.5009,0,-306.342,-29.5009,-306.342	1/2:134:0,57,77:0:0:57,77:1988,2673:-379.316,-217.634,-200.475,-162.03,0,-138.851	1/1:4:0,4,0:0:0:4,0:131,0:-12.1124,-1.20412,0,-12.1124,-1.20412,-12.1124	1/2:172:0,71,100:0:0:71,100:2491,3503:-487.783,-285.068,-263.695,-202.755,0,-172.652	1/2:45:0,23,22:0:0:23,22:818,775:-130.109,-63.4452,-56.5215,-67.0172,0,-60.3945	1/1:87:0,87,0:0:0:87,0:3050,0:-274.675,-26.1896,0,-274.675,-26.1896,-274.675	1/1:93:0,92,0:0:0:92,0:3256,0:-292.98,-27.6948,0,-292.98,-27.6948,-292.98	1/1:74:0,74,0:0:0:74,0:2586,0:-232.978,-22.2762,0,-232.978,-22.2762,-232.978	1/1:139:0,138,0:0:0:138,0:4866,0:-437.784,-41.5421,0,-437.784,-41.5421,-437.784	1/1:113:0,113,0:0:0:113,0:3979,0:-358.298,-34.0164,0,-358.298,-34.0164,-358.298	1/1:127:0,127,0:0:0:127,0:4500,0:-405.156,-38.2308,0,-405.156,-38.2308,-405.156	1/1:57:0,57,0:0:0:57,0:1996,0:-179.846,-17.1587,0,-179.846,-17.1587,-179.846	1/2:194:0,80,114:0:0:80,114:2848,4024:-560.131,-328.027,-303.945,-232.458,0,-198.141	1/1:104:0,104,0:0:0:104,0:3681,0:-331.49,-31.3071,0,-331.49,-31.3071,-331.49	1/1:7:0,7,0:0:0:7,0:246,0:-22.4798,-2.10721,0,-22.4798,-2.10721,-22.4798	1/2:148:0,53,95:0:0:53,95:1878,3368:-427.597,-274.679,-258.724,-153.214,0,-124.616	1/1:77:0,77,0:0:0:77,0:2720,0:-245.042,-23.1793,0,-245.042,-23.1793,-245.042	2/2:6:0,0,6:0:0:0,6:0,216:-19.7905,-19.7905,-19.7905,-1.80618,-1.80618,0	1/2:216:0,79,136:0:0:79,136:2787,4818:-619.401,-392.477,-368.695,-226.917,0,-185.977	1/2:37:0,4,33:0:0:4,33:133,1157:-105.26,-94.5005,-93.2963,-11.0935,0,-1.15948	1/1:3:0,3,0:0:0:3,0:106,0:-9.8891,-0.90309,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chr03	22630844	.	CC	TC,TT	187386	PASS	AB=0.765304,0.233278;ABP=2589.7,2617.42;AC=148,40;AF=0.787234,0.212766;AN=188;AO=7934,998;CIGAR=1X1M,2X;DP=8942;DPB=8942;DPRA=0,1.16124;EPP=17205.4,2135.54;EPPR=9.52472;GTI=10;LEN=1,2;MEANALT=1.58511,2.08333;MQM=50.9808,35.2786;MQMR=60;NS=94;NUMALT=2;ODDS=1203.88;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=283744,35063;QR=81;RO=3;RPL=3,994;RPP=17205.4,2135.54;RPPR=9.52472;RPR=7931,4;RUN=1,1;SAF=0,0;SAP=17231.5,2170.14;SAR=7934,998;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,16,9:0:0:16,9:576,311:-68.2807,-21.7,-16.8835,-46.8996,0,-44.1903	1/1:114:0,114,0:0:0:114,0:4061,0:-360.952,-34.3174,0,-360.952,-34.3174,-360.952	1/1:133:0,133,0:0:0:133,0:4751,0:-420.675,-40.037,0,-420.675,-40.037,-420.675	1/1:135:0,135,0:0:0:135,0:4834,0:-432.407,-40.6391,0,-432.407,-40.6391,-432.407	1/1:56:0,55,1:0:0:55,1:1980,36:-176.987,-16.5567,0,-174.419,-13.6701,-174.118	1/1:48:0,48,0:0:0:48,0:1720,0:-153.246,-14.4494,0,-153.246,-14.4494,-153.246	1/2:120:0,98,22:0:0:98,22:3469,742:-336.733,-55.2478,-25.7468,-281.804,0,-275.181	1/1:143:0,141,1:0:0:141,1:5041,36:-447.813,-42.4452,0,-445.365,-40.0138,-445.064	1/2:100:0,81,19:0:0:81,19:2900,667:-279.554,-46.0271,-21.6437,-233.838,0,-228.118	1/1:101:0,101,0:0:0:101,0:3620,0:-324.46,-30.404,0,-324.46,-30.404,-324.46	1/1:101:0,101,0:0:0:101,0:3622,0:-323.784,-30.404,0,-323.784,-30.404,-323.784	1/1:95:0,95,0:0:0:95,0:3390,0:-301.264,-28.5979,0,-301.264,-28.5979,-301.264	1/1:90:0,90,0:0:0:90,0:3209,0:-285.022,-27.0927,0,-285.022,-27.0927,-285.022	1/1:106:0,106,0:0:0:106,0:3784,0:-337.931,-31.9092,0,-337.931,-31.9092,-337.931	1/2:79:0,55,24:0:0:55,24:1962,864:-224.738,-65.6064,-49.0498,-159.473,0,-152.248	1/2:61:0,46,15:0:0:46,15:1651,538:-172.439,-38.5146,-24.6672,-134.25,0,-129.735	1/1:80:0,80,0:0:0:80,0:2856,0:-254.794,-24.0824,0,-254.794,-24.0824,-254.794	1/2:62:0,49,13:0:0:49,13:1756,466:-173.833,-31.9317,-17.1812,-142.216,0,-138.302	1/2:57:0,43,14:0:0:43,14:1548,491:-158.999,-33.6677,-20.7234,-125.644,0,-121.43	1/2:133:0,107,25:0:0:107,25:3837,887:-376.352,-65.1685,-32.9583,-311.164,0,-303.638	1/2:148:0,118,30:0:0:118,30:4220,1059:-416.226,-75.6402,-40.1187,-340.906,0,-331.875	1/2:104:0,70,33:0:0:70,33:2511,1133:-290.372,-86.3741,-65.302,-203.998,0,-194.064	1/2:68:0,49,19:0:0:49,19:1756,650:-192.349,-49.4914,-34.741,-143.189,0,-137.469	1/1:31:0,30,1:0:0:30,1:1076,36:-96.1957,-9.0309,0,-93.6291,-6.14431,-93.3281	1/1:64:0,64,0:0:0:64,0:2266,0:-202.138,-19.2659,0,-202.138,-19.2659,-202.138	1/2:418:0,330,87:0:0:330,87:11834,3044:-1194.55,-233.304,-133.964,-961.273,0,-935.084	1/2:187:0,140,47:0:0:140,47:5028,1688:-528.69,-120.607,-78.4627,-408.411,0,-394.262	1/1:39:0,39,0:0:0:39,0:1389,0:-124.62,-11.7402,0,-124.62,-11.7402,-124.62	1/2:233:0,194,39:0:0:194,39:6943,1355:-665.938,-103.301,-44.9012,-562.968,0,-551.228	1/2:137:0,100,37:0:0:100,37:3573,1304:-382.766,-93.5504,-63.4474,-289.54,0,-278.402	1/1:125:0,125,0:0:0:125,0:4464,0:-399.216,-37.6288,0,-399.216,-37.6288,-399.216	1/1:2:0,2,0:0:0:2,0:72,0:-6.69528,-0.60206,0,-6.69528,-0.60206,-6.69528	1/1:19:0,18,1:0:0:18,1:648,28:-57.9981,-5.41854,0,-55.8712,-3.01675,-55.5702	1/1:2:0,2,0:0:0:2,0:72,0:-6.69865,-0.60206,0,-6.69865,-0.60206,-6.69865	1/1:8:0,8,0:0:0:8,0:284,0:-25.1061,-2.40824,0,-25.1061,-2.40824,-25.1061	1/1:5:0,5,0:0:0:5,0:180,0:-16.3559,-1.50515,0,-16.3559,-1.50515,-16.3559	1/1:331:0,331,0:0:0:331,0:11837,0:-1061.15,-99.6409,0,-1061.15,-99.6409,-1061.15	1/1:206:0,205,0:0:0:205,0:7317,0:-652.729,-61.7112,0,-652.729,-61.7112,-652.729	1/2:82:1,64,17:1:36:64,17:2292,610:-222.779,-38.5645,-22.2391,-181.533,0,-179.353	1/2:5:0,4,1:0:0:4,1:144,36:-14.6018,-2.88659,-1.68247,-12.0419,0,-11.7408	1/2:149:0,121,28:0:0:121,28:4337,995:-423.5,-71.3862,-34.9615,-352.437,0,-344.008	1/1:54:0,54,0:0:0:54,0:1931,0:-172.914,-16.2556,0,-172.914,-16.2556,-172.914	1/2:85:1,65,19:1:20:65,19:2308,680:-233.667,-47.2483,-29.1744,-185.347,0,-181.124	1/2:92:0,74,18:0:0:74,18:2652,607:-261.198,-45.5716,-23.2953,-215.948,0,-210.53	1/1:59:0,59,0:0:0:59,0:2120,0:-190.456,-17.7608,0,-190.456,-17.7608,-190.456	1/2:58:0,44,14:0:0:44,14:1576,502:-166.565,-38.2678,-25.0225,-128.637,0,-124.423	1/2:137:0,104,33:0:0:104,33:3721,1176:-380.171,-80.6093,-49.3022,-299.878,0,-289.944	1/2:153:1,123,29:1:25:123,29:4362,1020:-427.059,-73.8952,-38.8149,-351.595,0,-344.813	1/1:133:0,133,0:0:0:133,0:4754,0:-424.963,-40.037,0,-424.963,-40.037,-424.963	1/1:88:0,87,1:0:0:87,1:3100,34:-276.687,-26.1896,0,-274.199,-23.3916,-273.898	1/1:54:0,54,0:0:0:54,0:1944,0:-174.558,-16.2556,0,-174.558,-16.2556,-174.558	1/1:10:0,10,0:0:0:10,0:360,0:-32.5976,-3.0103,0,-32.5976,-3.0103,-32.5976	1/1:140:0,140,0:0:0:140,0:4998,0:-445.285,-42.1442,0,-445.285,-42.1442,-445.285	1/2:30:0,22,8:0:0:22,8:783,286:-86.0477,-22.4537,-15.831,-63.9383,0,-61.5301	1/1:12:0,12,0:0:0:12,0:432,0:-38.981,-3.61236,0,-38.981,-3.61236,-38.981	1/2:123:0,91,32:0:0:91,32:3260,1125:-345.535,-81.0642,-53.6705,-264.796,0,-255.163	1/1:27:0,27,0:0:0:27,0:968,0:-87.1668,-8.127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chr03	22630851	.	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chr03	22644801	.	C	G	5560.11	PASS	AB=0.276284;ABP=536.412;AC=26;AF=0.139785;AN=186;AO=340;CIGAR=1X;DP=3816;DPB=3816;DPRA=1.18654;EPP=48.0747;EPPR=1557.95;GTI=4;LEN=1;MEANALT=1;MQM=59.9765;MQMR=59.9862;NS=93;NUMALT=1;ODDS=0.271816;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=12018;QR=123738;RO=3473;RPL=336;RPP=706.976;RPPR=5367;RPR=4;RUN=1;SAF=214;SAP=52.4688;SAR=126;SRF=2737;SRP=2506.49;SRR=736;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:6,3:6:212:3:104:-6.99354,0,-16.7155	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/1:19:15,4:15:532:4:140:-7.22501,0,-42.4935	0/0:18:18,0:18:625:0:0:0,-5.41854,-56.5725	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:19:19,0:19:667:0:0:0,-5.71957,-60.3546	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:19:18,0:18:640:0:0:0,-5.41854,-57.5697	0/1:12:8,4:8:275:4:144:-9.70126,0,-21.4711	0/0:253:253,0:253:8973:0:0:0,-76.1606,-807.556	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:68:35,33:35:1256:33:1148:-83.1528,0,-92.8752	0/0:50:49,0:49:1752:0:0:0,-14.7505,-157.751	0/0:48:48,0:48:1692:0:0:0,-14.4494,-152.563	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:42:22,20:22:779:20:703:-50.9503,0,-57.7888	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:79:63,16:63:2246:16:568:-27.6705,0,-178.621	0/0:18:18,0:18:630:0:0:0,-5.41854,-57.0246	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:17:12,5:12:432:5:176:-11.0675,0,-34.1037	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/1:31:15,16:15:540:16:572:-42.4815,0,-39.6046	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:11:10,1:10:347:1:36:-0.286945,0,-28.2523	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:133:133,0:133:4759:0:0:0,-40.037,-428.467	0/0:122:122,0:122:4360:0:0:0,-36.7257,-392.575	0/0:91:91,0:91:3234:0:0:0,-27.3937,-291.282	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:112:92,20:92:3282:20:716:-31.0524,0,-261.884	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/1:70:58,12:58:2069:12:424:-17.4243,0,-165.407	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:47:46,0:46:1644:0:0:0,-13.8474,-147.889	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:12:6,6:6:197:6:212:-15.8124,0,-14.439	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:61:61,0:61:2163:0:0:0,-18.3628,-194.937	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:56:56,0:56:1982:0:0:0,-16.8577,-178.653	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:20:19,1:19:684:1:36:0,-2.42232,-58.2921	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.8746	.:.:.:.:.:.:.:.	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/0:324:324,0:324:11551:0:0:0,-97.5337,-1039.46	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:57:57,0:57:2015:0:0:0,-17.1587,-181.62	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.044	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:13:8,5:8:284:5:172:-11.9046,0,-21.99	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:49:49,0:49:1728:0:0:0,-14.7505,-155.802	0/1:49:28,21:28:1000:21:752:-53.2558,0,-75.5649	0/1:43:13,30:13:464:30:1036:-80.6046,0,-29.1532	0/1:92:45,47:45:1583:47:1680:-123.792,0,-115.062	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.7322	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:187:167,20:167:5972:20:689:-6.03594,0,-481.295	0/1:258:229,29:229:8148:29:1022:-14.6251,0,-655.671	0/1:33:15,18:15:536:18:648:-48.7179,0,-38.6408	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:87:87,0:87:3107:0:0:0,-26.1896,-279.857
chr03	22670027	.	GACT	GACC,AACC	290909	PASS	AB=0.47872,0.515688;ABP=15.6715,9.89169;AC=156,30;AF=0.83871,0.16129;AN=186;AO=8723,1686;CIGAR=3M1X,1X2M1X;DP=10459;DPB=10459;DPRA=0,1.09941;EPP=61.5664,27.5379;EPPR=7.35324;GTI=1;LEN=1,4;MEANALT=1.92473,2.63158;MQM=59.9474,59.4846;MQMR=60;NS=93;NUMALT=2;ODDS=0.234004;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=311317,59154;QR=66;RO=2;RPL=4604,774;RPP=61.5664,27.5379;RPPR=7.35324;RPR=4119,912;RUN=1,1;SAF=0,0;SAP=18944.8,3664.11;SAR=8723,1686;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:33:0,15,17:0:0:15,17:532,606:-92.7021,-49.3597,-44.8443,-43.3392,0,-38.2217	1/2:262:0,114,148:0:0:114,148:4057,5231:-756.875,-426.234,-391.916,-330.996,0,-286.444	1/2:61:0,33,28:0:0:33,28:1168,975:-174.646,-79.5029,-69.5689,-95.4932,0,-87.0644	1/1:217:0,216,0:0:0:216,0:7712,0:-691.951,-65.0225,0,-691.951,-65.0225,-691.951	1/1:116:0,116,0:0:0:116,0:4141,0:-372.873,-34.9195,0,-372.873,-34.9195,-372.873	1/1:69:0,69,0:0:0:69,0:2463,0:-221.924,-20.7711,0,-221.924,-20.7711,-221.924	1/1:118:0,117,0:0:0:117,0:4188,0:-376.823,-35.2205,0,-376.823,-35.2205,-376.823	1/1:110:0,110,0:0:0:110,0:3911,0:-351.08,-33.1133,0,-351.08,-33.1133,-351.08	1/1:108:0,108,0:0:0:108,0:3848,0:-346.515,-32.5112,0,-346.515,-32.5112,-346.515	1/2:114:0,59,53:0:0:59,53:2112,1851:-322.81,-150.574,-132.813,-172.267,0,-156.312	1/1:73:0,73,0:0:0:73,0:2616,0:-235.688,-21.9752,0,-235.688,-21.9752,-235.688	1/1:95:0,94,0:0:0:94,0:3341,0:-300.545,-28.2968,0,-300.545,-28.2968,-300.545	1/2:114:0,66,48:0:0:66,48:2349,1660:-326.594,-135.147,-115.279,-191.797,0,-177.347	1/1:115:0,115,0:0:0:115,0:4128,0:-371.703,-34.6185,0,-371.703,-34.6185,-371.703	1/1:93:0,92,0:0:0:92,0:3283,0:-295.33,-27.6948,0,-295.33,-27.6948,-295.33	1/1:80:0,79,0:0:0:79,0:2828,0:-254.478,-23.7814,0,-254.478,-23.7814,-254.478	1/2:112:0,61,50:0:0:61,50:2145,1764:-317.795,-143.194,-124.832,-174.699,0,-159.647	1/1:106:0,104,1:0:0:104,1:3702,36:-333.02,-31.3071,0,-330.083,-28.3697,-329.782	1/2:29:0,13,16:0:0:13,16:468,559:-84.0127,-45.8215,-41.9081,-38.5463,0,-33.7298	1/1:236:0,235,0:0:0:235,0:8361,0:-752.134,-70.7421,0,-752.134,-70.7421,-752.134	1/1:153:0,153,0:0:0:153,0:5458,0:-491.174,-46.0576,0,-491.174,-46.0576,-491.174	1/1:99:0,99,0:0:0:99,0:3547,0:-319.438,-29.802,0,-319.438,-29.802,-319.438	1/1:206:0,205,0:0:0:205,0:7266,0:-653.635,-61.7112,0,-653.635,-61.7112,-653.635	1/1:162:0,161,0:0:0:161,0:5752,0:-517.353,-48.4658,0,-517.353,-48.4658,-517.353	1/1:13:0,12,0:0:0:12,0:432,0:-38.8798,-3.61236,0,-38.8798,-3.61236,-38.8798	1/2:288:0,142,144:0:0:142,144:5072,5091:-828.123,-414.602,-371.856,-413.517,0,-370.168	1/1:174:0,173,0:0:0:173,0:6181,0:-556.026,-52.0782,0,-556.026,-52.0782,-556.026	1/2:53:0,25,27:0:0:25,27:892,942:-149.325,-76.6022,-69.0765,-72.7911,0,-64.6633	1/1:234:0,233,0:0:0:233,0:8306,0:-747.111,-70.14,0,-747.111,-70.14,-747.111	1/1:219:0,206,13:0:0:206,13:7372,457:-663.091,-62.0122,0,-625.892,-24.462,-621.979	1/1:184:0,184,0:0:0:184,0:6556,0:-590.068,-55.3895,0,-590.068,-55.3895,-590.068	1/2:7:0,4,3:0:0:4,3:144,107:-20.8306,-9.07908,-7.87496,-12.1095,0,-11.2064	1/2:18:0,16,2:0:0:16,2:572,72:-52.8721,-6.23466,-1.41818,-46.9969,0,-46.3949	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	.:.:.:.:.:.:.:.	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:266:0,266,0:0:0:266,0:9509,0:-855.768,-80.074,0,-855.768,-80.074,-855.768	1/1:130:0,129,0:0:0:129,0:4608,0:-414.605,-38.8329,0,-414.605,-38.8329,-414.605	1/2:71:0,45,26:0:0:45,26:1612,910:-205.81,-74.3403,-60.794,-131.822,0,-123.995	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:168:0,84,83:0:0:84,83:2989,2896:-479.095,-235.493,-210.206,-243.595,0,-218.609	1/2:35:0,16,19:0:0:16,19:559,663:-99.7327,-54.2605,-49.444,-45.8211,0,-40.1016	1/1:137:0,137,0:0:0:137,0:4861,0:-437.644,-41.2411,0,-437.644,-41.2411,-437.644	1/1:131:0,129,0:0:0:129,0:4607,0:-414.516,-38.8329,0,-414.516,-38.8329,-414.516	1/1:114:0,114,0:0:0:114,0:4062,0:-365.766,-34.3174,0,-365.766,-34.3174,-365.766	1/1:87:0,87,0:0:0:87,0:3128,0:-281.745,-26.1896,0,-281.745,-26.1896,-281.745	1/1:127:1,125,0:1:30:125,0:4426,0:-395.48,-35.2601,0,-395.781,-37.6288,-398.179	1/1:190:0,188,0:0:0:188,0:6719,0:-604.422,-56.5936,0,-604.422,-56.5936,-604.422	1/1:97:0,95,1:0:0:95,1:3374,35:-303.595,-28.5979,0,-300.747,-25.6802,-300.446	1/2:188:0,86,102:0:0:86,102:3083,3600:-544.925,-293.472,-267.583,-251.809,0,-221.103	1/1:171:0,170,0:0:0:170,0:6082,0:-547.212,-51.1751,0,-547.212,-51.1751,-547.212	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:100:0,56,43:0:0:56,43:1989,1495:-283.579,-121.505,-104.648,-162.065,0,-149.121	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/2:32:0,17,15:0:0:17,15:612,498:-90.5699,-40.619,-35.5014,-50.2959,0,-45.7805	1/2:125:0,59,66:0:0:59,66:2120,2317:-361.87,-188.918,-171.157,-173.308,0,-153.44	1/2:108:0,52,55:0:0:52,55:1855,1951:-310.275,-159.054,-143.401,-151.325,0,-134.768	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:13:0,10,3:0:0:10,3:351,108:-37.7298,-9.17114,-6.16084,-28.9164,0,-28.0133	1/1:125:0,125,0:0:0:125,0:4468,0:-402.288,-37.6288,0,-402.288,-37.6288,-402.288	1/1:118:0,117,1:0:0:117,1:4180,36:-376.02,-35.2205,0,-373.083,-31.9233,-372.782	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:174:0,172,1:0:0:172,1:6080,36:-546.946,-51.7772,0,-544.009,-48.8397,-543.708	1/1:206:0,205,0:0:0:205,0:7336,0:-660.007,-61.7112,0,-660.007,-61.7112,-660.007	1/1:78:0,78,0:0:0:78,0:2795,0:-251.786,-23.4803,0,-251.786,-23.4803,-251.786	1/1:83:0,83,0:0:0:83,0:2959,0:-266.544,-24.9855,0,-266.544,-24.9855,-266.544	1/1:206:0,204,2:0:0:204,2:7283,72:-655.162,-61.4101,0,-649.287,-55.1755,-648.685	1/2:103:0,29,73:0:0:29,73:1044,2567:-294.131,-208.944,-200.214,-85.1854,0,-63.2102	1/1:20:0,20,0:0:0:20,0:703,0:-63.5935,-6.0206,0,-63.5935,-6.0206,-63.5935	1/1:63:0,63,0:0:0:63,0:2256,0:-203.171,-18.9649,0,-203.171,-18.9649,-203.171	1/1:115:0,115,0:0:0:115,0:4089,0:-368.191,-34.6185,0,-368.191,-34.6185,-368.191	1/1:19:0,18,0:0:0:18,0:648,0:-58.434,-5.41854,0,-58.434,-5.41854,-58.434	1/2:117:0,45,71:0:0:45,71:1604,2478:-332.267,-201.517,-187.97,-130.745,0,-109.372	1/1:82:0,82,0:0:0:82,0:2930,0:-263.896,-24.6845,0,-263.896,-24.6845,-263.896	1/1:266:0,263,2:0:0:263,2:9388,72:-844.573,-79.1709,0,-838.698,-73.1958,-838.096	1/1:150:0,150,0:0:0:150,0:5358,0:-482.347,-45.1545,0,-482.347,-45.1545,-482.347	1/2:146:0,73,71:0:0:73,71:2601,2487:-414.384,-202.378,-180.403,-212.053,0,-190.68	1/2:121:0,54,67:0:0:54,67:1936,2377:-351.554,-193.652,-177.396,-158.258,0,-138.089	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:110:0,103,5:0:0:103,5:3700,176:-332.844,-31.0061,0,-318.517,-16.673,-317.012	1/1:130:0,130,0:0:0:130,0:4664,0:-419.92,-39.1339,0,-419.92,-39.1339,-419.92	1/1:149:0,149,0:0:0:149,0:5311,0:-478.125,-44.8535,0,-478.125,-44.8535,-478.125	1/1:120:0,120,0:0:0:120,0:4308,0:-387.895,-36.1236,0,-387.895,-36.1236,-387.895	1/2:98:0,46,52:0:0:46,52:1656,1800:-281.581,-146.453,-132.606,-135.481,0,-119.827	1/2:176:0,72,104:0:0:72,104:2588,3655:-508.972,-297.833,-276.159,-211.494,0,-180.187	1/2:247:0,127,118:0:0:127,118:4536,4101:-703.22,-333.397,-295.166,-369.903,0,-334.382	1/1:64:1,63,0:1:36:63,0:2264,0:-200.424,-15.6676,0,-200.725,-18.9649,-203.662	1/1:110:0,108,0:0:0:108,0:3827,0:-344.301,-32.5112,0,-344.301,-32.5112,-344.301	1/1:101:0,101,0:0:0:101,0:3600,0:-324.208,-30.404,0,-324.208,-30.404,-324.208	1/2:49:0,28,21:0:0:28,21:1000,744:-142.494,-60.9628,-52.5339,-81.8865,0,-75.5649	1/2:86:0,44,41:0:0:44,41:1567,1434:-244.428,-116.704,-103.459,-127.775,0,-115.432	1/2:145:0,50,94:0:0:50,94:1788,3295:-413.871,-268.156,-253.104,-145.769,0,-117.472	1/1:77:0,76,0:0:0:76,0:2705,0:-243.442,-22.8783,0,-243.442,-22.8783,-243.442	1/1:162:0,161,0:0:0:161,0:5748,0:-517.075,-48.4658,0,-517.075,-48.4658,-517.075
chr03	22683035	.	G	A	76575.5	PASS	AB=0.43646;ABP=55.7165;AC=153;AF=0.822581;AN=186;AO=3517;CIGAR=1X;DP=4393;DPB=4393;DPRA=3.17246;EPP=7631.4;EPPR=1905.22;GTI=2;LEN=1;MEANALT=1;MQM=59.648;MQMR=59.9064;NS=93;NUMALT=1;ODDS=0.166572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125849;QR=31322;RO=876;RPL=1;RPP=7631.4;RPPR=1905.22;RPR=3516;RUN=1;SAF=0;SAP=7640.08;SAR=3517;SRF=0;SRP=1905.22;SRR=876;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:8,22:8:288:22:792:-62.5748,0,-17.2365	0/1:36:24,12:24:864:12:428:-28.0135,0,-67.2455	0/1:139:74,65:74:2646:65:2308:-166.075,0,-196.536	1/1:72:1,71:1:36:71:2552:-226.042,-18.0759,0	1/1:11:0,11:0:0:11:388:-35.2561,-3.31133,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:36:0,36:0:0:36:1283:-115.768,-10.8371,0	1/1:47:0,47:0:0:47:1677:-151.208,-14.1484,0	1/1:47:0,47:0:0:47:1692:-152.559,-14.1484,0	0/1:45:27,18:27:949:18:644:-44.7419,0,-72.1764	1/1:21:0,21:0:0:21:741:-67.0044,-6.32163,0	1/1:91:0,91:0:0:91:3259:-293.444,-27.3937,0	0/1:97:55,42:55:1957:42:1508:-106.815,0,-147.204	1/1:25:0,25:0:0:25:900:-81.3118,-7.52575,0	1/1:48:0,48:0:0:48:1724:-155.442,-14.4494,0	1/1:34:0,34:0:0:34:1224:-110.458,-10.235,0	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:26:6,20:6:216:20:720:-57.2856,0,-11.9637	1/1:70:0,70:0:0:70:2512:-226.324,-21.0721,0	1/1:110:0,110:0:0:110:3900:-351.158,-33.1133,0	1/1:67:0,67:0:0:67:2396:-215.87,-20.169,0	1/1:41:0,41:0:0:41:1468:-132.409,-12.3422,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:49:0,49:0:0:49:1750:-157.764,-14.7505,0	0/1:145:89,56:89:3200:56:2012:-137.698,0,-244.573	1/1:147:0,147:0:0:147:5268:-474.219,-44.2514,0	0/1:26:13,13:13:459:13:464:-34.2707,0,-33.8173	1/1:97:0,97:0:0:97:3465:-312.001,-29.1999,0	0/1:41:5,36:5:180:36:1296:-104.597,0,-4.20983	1/1:34:0,34:0:0:34:1220:-110.104,-10.235,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:12:11,1:11:396:1:36:0,-0.0191872,-32.3896	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:324:-29.4976,-2.70927,0	1/1:16:0,16:0:0:16:572:-51.7914,-4.81648,0	1/1:156:0,156:0:0:156:5604:-504.471,-46.9607,0	1/1:54:0,54:0:0:54:1925:-173.5,-16.2556,0	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.4581	.:.:.:.:.:.:.:.	0/1:28:16,12:16:567:12:417:-29.4314,0,-42.9319	0/1:18:10,8:10:356:8:284:-20.4848,0,-26.9627	1/1:47:0,47:0:0:47:1649:-148.688,-14.1484,0	1/1:28:0,28:0:0:28:1004:-90.6712,-8.42884,0	1/1:30:0,30:0:0:30:1080:-97.5109,-9.0309,0	1/1:59:0,59:0:0:59:2120:-191.065,-17.7608,0	1/1:37:0,37:0:0:37:1313:-118.452,-11.1381,0	1/1:87:1,86:1:36:86:3080:-273.689,-22.5913,0	1/1:44:0,44:0:0:44:1566:-141.206,-13.2453,0	0/1:55:40,15:40:1427:15:540:-32.3775,0,-112.17	1/1:87:0,87:0:0:87:3132:-282.094,-26.1896,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:63:25,38:25:900:38:1368:-104.448,0,-62.3561	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:70:37,33:37:1315:33:1176:-85.0665,0,-97.5725	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:31:0,31:0:0:31:1116:-100.733,-9.33193,0	1/1:64:0,64:0:0:64:2283:-205.717,-19.2659,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:65:0,65:0:0:65:2308:-207.977,-19.567,0	1/1:89:1,88:1:36:88:3152:-280.294,-23.1934,0	1/1:24:0,24:0:0:24:864:-78.0733,-7.22472,0	1/1:21:0,21:0:0:21:752:-67.9165,-6.32163,0	1/1:59:0,59:0:0:59:2120:-191.046,-17.7608,0	0/1:108:82,26:82:2940:26:917:-50.3331,0,-232.311	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:83:52,31:52:1849:31:1112:-75.3895,0,-141.695	1/1:25:0,25:0:0:25:887:-80.1031,-7.52575,0	1/1:38:0,38:0:0:38:1360:-122.69,-11.4391,0	1/1:68:0,68:0:0:68:2436:-219.485,-20.47,0	0/1:30:18,12:18:648:12:432:-30.1739,0,-49.621	0/1:69:45,24:45:1597:24:864:-57.2951,0,-123.247	1/1:10:0,10:0:0:10:360:-32.7361,-3.0103,0	1/1:58:0,58:0:0:58:2073:-186.816,-17.4597,0	1/1:58:0,58:0:0:58:2069:-186.443,-17.4597,0	1/1:103:0,103:0:0:103:3692:-332.46,-31.0061,0	1/1:44:0,44:0:0:44:1562:-140.868,-13.2453,0	0/1:39:22,17:22:788:17:608:-43.3119,0,-59.5046	0/1:38:15,23:15:540:23:824:-63.0418,0,-37.4974	0/1:91:53,38:53:1900:38:1360:-95.3045,0,-143.883	1/1:20:0,20:0:0:20:711:-64.2993,-6.0206,0	1/1:57:0,57:0:0:57:2052:-184.921,-17.1587,0	1/1:56:0,56:0:0:56:2012:-181.095,-16.8577,0	0/1:20:14,6:14:496:6:216:-13.7652,0,-38.9537	0/1:71:39,32:39:1396:32:1136:-81.1754,0,-104.566	0/1:64:41,23:41:1476:23:815:-54.4048,0,-113.87	1/1:48:0,48:0:0:48:1728:-155.535,-14.4494,0	1/1:78:0,78:0:0:78:2771:-249.624,-23.4803,0
chr03	22683044	.	CGCG	TGCG,TGCA	93299.5	PASS	AB=0.424832,0.567785;ABP=76.135,62.4766;AC=151,33;AF=0.820652,0.179348;AN=184;AO=3402,875;CIGAR=1X3M,1X2M1X;DP=4301;DPB=4301;DPRA=3.65385,1.17589;EPP=7286.5,1877.08;EPPR=16.0391;GTI=2;LEN=1,4;MEANALT=1.54444,2.17647;MQM=59.677,59.9337;MQMR=60;NS=92;NUMALT=2;ODDS=0.627736;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=120868,30433;QR=185;RO=6;RPL=12,3;RPP=7286.5,1877.08;RPPR=16.0391;RPR=3390,872;RUN=1,1;SAF=0,0;SAP=7390.36,1903.05;SAR=3402,875;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:29:0,21,8:0:0:21,8:748,282:-84.2837,-23.3134,-16.9918,-61.3237,0,-58.9154	1/2:37:0,13,23:0:0:13,23:446,801:-101.341,-65.1348,-61.2214,-36.2017,0,-29.278	1/2:135:0,60,74:0:0:60,74:2140,2578:-384.036,-209.632,-191.57,-174.398,0,-152.122	1/1:69:0,68,1:0:0:68,1:2410,36:-216.507,-20.47,0,-213.569,-17.1728,-213.268	1/1:11:0,11,0:0:0:11,0:384,0:-34.89,-3.31133,0,-34.89,-3.31133,-34.89	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:34:0,34,0:0:0:34,0:1216,0:-109.744,-10.235,0,-109.744,-10.235,-109.744	1/1:45:0,45,0:0:0:45,0:1592,0:-143.483,-13.5464,0,-143.483,-13.5464,-143.483	1/1:49:0,49,0:0:0:49,0:1744,0:-157.236,-14.7505,0,-157.236,-14.7505,-157.236	1/2:45:0,17,28:0:0:17,28:604,961:-127.591,-78.371,-73.2535,-49.5707,0,-41.1419	1/1:22:0,22,0:0:0:22,0:777,0:-70.1112,-6.62266,0,-70.1112,-6.62266,-70.1112	1/1:89:0,87,0:0:0:87,0:3075,0:-276.593,-26.1896,0,-276.593,-26.1896,-276.593	1/2:95:0,39,56:0:0:39,56:1368,1928:-268.266,-156.938,-145.198,-111.676,0,-94.8179	1/1:24:0,23,0:0:0:23,0:824,0:-74.1194,-6.92369,0,-74.1194,-6.92369,-74.1194	1/1:45:0,45,0:0:0:45,0:1601,0:-144.377,-13.5464,0,-144.377,-13.5464,-144.377	1/1:34:0,34,0:0:0:34,0:1198,0:-108.118,-10.235,0,-108.118,-10.235,-108.118	2/2:15:0,0,15:0:0:0,15:0,529:-47.9416,-47.9416,-47.9416,-4.51545,-4.51545,0	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/2:25:0,19,6:0:0:19,6:662,214:-71.6136,-17.8016,-12.0821,-54.1665,0,-52.3603	1/1:68:0,68,0:0:0:68,0:2436,0:-219.493,-20.47,0,-219.493,-20.47,-219.493	1/1:107:0,107,0:0:0:107,0:3790,0:-341.284,-32.2102,0,-341.284,-32.2102,-341.284	1/1:63:0,63,0:0:0:63,0:2240,0:-201.841,-18.9649,0,-201.841,-18.9649,-201.841	1/1:40:0,39,0:0:0:39,0:1393,0:-125.326,-11.7402,0,-125.326,-11.7402,-125.326	1/1:30:0,30,0:0:0:30,0:1071,0:-96.7016,-9.0309,0,-96.7016,-9.0309,-96.7016	1/1:46:0,46,0:0:0:46,0:1626,0:-146.604,-13.8474,0,-146.604,-13.8474,-146.604	1/2:147:0,56,91:0:0:56,91:1995,3167:-420.475,-257.867,-241.009,-162.962,0,-135.568	1/1:137:0,137,0:0:0:137,0:4869,0:-438.32,-41.2411,0,-438.32,-41.2411,-438.32	1/2:24:1,10,12:1:36:10,12:347,425:-59.5935,-31.6904,-31.618,-25.2695,0,-24.5958	1/1:94:0,94,0:0:0:94,0:3331,0:-300.001,-28.2968,0,-300.001,-28.2968,-300.001	1/2:41:0,36,5:0:0:36,5:1292,179:-120.339,-14.9552,-4.11816,-105.742,0,-104.237	1/1:32:0,32,0:0:0:32,0:1140,0:-102.907,-9.63296,0,-102.907,-9.63296,-102.907	1/2:4:0,1,3:0:0:1,3:36,107:-12.0173,-9.07908,-8.77805,-3.29724,0,-2.39415	2/2:11:0,0,11:0:0:0,11:0,392:-35.6204,-35.6204,-35.6204,-3.31133,-3.31133,0	.:.:.:.:.:.:.:.	1/1:9:0,9,0:0:0:9,0:320,0:-29.1341,-2.70927,0,-29.1341,-2.70927,-29.1341	1/1:16:0,16,0:0:0:16,0:568,0:-51.4299,-4.81648,0,-51.4299,-4.81648,-51.4299	1/1:154:0,154,0:0:0:154,0:5493,0:-494.488,-46.3586,0,-494.488,-46.3586,-494.488	1/1:53:0,53,0:0:0:53,0:1868,0:-168.374,-15.9546,0,-168.374,-15.9546,-168.374	1/2:29:0,16,12:0:0:16,12:572,421:-81.0056,-34.3579,-29.5414,-46.7437,0,-43.1314	.:.:.:.:.:.:.:.	1/2:27:0,11,16:0:0:11,16:396,564:-78.5887,-46.274,-42.9627,-32.6714,0,-27.8549	1/2:19:0,8,11:0:0:8,11:280,392:-55.0873,-32.3087,-29.9005,-23.1311,0,-19.8197	1/1:44:2,41,0:2:56:41,0:1433,0:-123.914,-7.95859,0,-124.516,-12.3422,-128.95	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6712,-8.42884,0,-90.6712,-8.42884,-90.6712	1/1:31:0,31,0:0:0:31,0:1108,0:-100.029,-9.33193,0,-100.029,-9.33193,-100.029	1/1:58:0,58,0:0:0:58,0:2080,0:-187.467,-17.4597,0,-187.467,-17.4597,-187.467	1/1:34:1,33,0:1:30:33,0:1171,0:-102.69,-7.23545,0,-102.991,-9.93399,-105.388	1/1:83:0,82,1:0:0:82,1:2920,36:-262.535,-24.6845,0,-259.598,-21.3872,-259.297	1/1:43:0,43,0:0:0:43,0:1536,0:-138.506,-12.9443,0,-138.506,-12.9443,-138.506	1/2:57:0,16,41:0:0:16,41:572,1412:-161.67,-115.031,-110.214,-46.9922,0,-34.65	1/1:87:0,87,0:0:0:87,0:3109,0:-280.027,-26.1896,0,-280.027,-26.1896,-280.027	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:61:0,36,25:0:0:36,25:1284,844:-173.416,-68.7434,-57.9063,-105.018,0,-97.4924	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:4:0,1,3:0:0:1,3:36,100:-11.3711,-8.42703,-8.126,-3.29724,0,-2.39415	1/2:69:0,31,38:0:0:31,38:1111,1332:-199.339,-108.733,-99.4006,-90.9611,0,-79.522	1/2:23:0,11,12:0:0:11,12:388,428:-66.8384,-35.2468,-31.9355,-31.946,0,-28.3337	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:12:0,6,6:0:0:6,6:208,211:-34.4314,-17.5276,-15.7214,-17.2529,0,-15.4467	1/1:30:0,30,0:0:0:30,0:1063,0:-95.9744,-9.0309,0,-95.9744,-9.0309,-95.9744	1/1:63:0,63,0:0:0:63,0:2243,0:-202.121,-18.9649,0,-202.121,-18.9649,-202.121	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:63:0,63,0:0:0:63,0:2236,0:-201.503,-18.9649,0,-201.503,-18.9649,-201.503	1/1:87:0,86,1:0:0:86,1:3046,25:-274.107,-25.8886,0,-272.16,-23.6897,-271.859	1/1:23:0,23,0:0:0:23,0:816,0:-73.7525,-6.92369,0,-73.7525,-6.92369,-73.7525	1/1:19:0,19,0:0:0:19,0:672,0:-60.7156,-5.71957,0,-60.7156,-5.71957,-60.7156	1/1:55:0,55,0:0:0:55,0:1943,0:-175.142,-16.5567,0,-175.142,-16.5567,-175.142	1/2:105:0,22,83:0:0:22,83:788,2939:-304.006,-239.743,-233.12,-64.6198,0,-39.6343	1/1:11:0,11,0:0:0:11,0:384,0:-34.8947,-3.31133,0,-34.8947,-3.31133,-34.8947	1/1:25:0,25,0:0:0:25,0:892,0:-80.5997,-7.52575,0,-80.5997,-7.52575,-80.5997	1/1:34:1,33,0:1:34:33,0:1179,0:-103.018,-6.83611,0,-103.319,-9.93399,-106.077	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:84:0,32,52:0:0:32,52:1125,1796:-237.788,-146.23,-136.598,-91.9067,0,-76.2532	1/1:23:0,23,0:0:0:23,0:828,0:-74.7991,-6.92369,0,-74.7991,-6.92369,-74.7991	1/1:38:0,37,0:0:0:37,0:1320,0:-118.811,-11.1381,0,-118.811,-11.1381,-118.811	1/1:68:0,68,0:0:0:68,0:2419,0:-217.954,-20.47,0,-217.954,-20.47,-217.954	1/2:28:0,10,16:0:0:10,16:352,541:-72.492,-43.8351,-40.8248,-28.6461,0,-23.8296	1/2:68:0,23,45:0:0:23,45:799,1597:-195.419,-130.475,-123.551,-65.2938,0,-51.7475	1/1:10:0,9,0:0:0:9,0:324,0:-29.1468,-2.70927,0,-29.1468,-2.70927,-29.1468	1/1:57:0,57,0:0:0:57,0:2023,0:-182.323,-17.1587,0,-182.323,-17.1587,-182.323	1/1:57:0,56,0:0:0:56,0:1996,0:-179.555,-16.8577,0,-179.555,-16.8577,-179.555	1/1:100:0,100,0:0:0:100,0:3568,0:-321.307,-30.103,0,-321.307,-30.103,-321.307	1/1:41:0,41,0:0:0:41,0:1468,0:-132.416,-12.3422,0,-132.416,-12.3422,-132.416	1/2:38:0,17,21:0:0:17,21:590,730:-107.659,-59.6997,-54.5822,-48.3067,0,-41.985	1/2:38:1,22,15:1:29:22,15:774,516:-102.359,-39.6516,-35.3342,-60.7566,0,-58.5471	1/2:91:0,39,50:0:0:39,50:1387,1727:-253.36,-140.325,-128.585,-113.05,0,-97.9982	1/1:20:0,20,0:0:0:20,0:698,0:-63.1251,-6.0206,0,-63.1251,-6.0206,-63.1251	1/1:58:0,58,0:0:0:58,0:2063,0:-185.911,-17.4597,0,-185.911,-17.4597,-185.911	1/1:55:0,55,0:0:0:55,0:1942,0:-174.829,-16.5567,0,-174.829,-16.5567,-174.829	1/2:20:0,6,14:0:0:6,14:207,487:-56.7559,-39.9456,-38.1394,-17.156,0,-12.9416	1/2:70:0,31,38:0:0:31,38:1112,1300:-196.215,-105.508,-96.1763,-90.7084,0,-79.2692	1/2:65:0,23,42:0:0:23,42:816,1436:-183.376,-116.888,-109.964,-66.838,0,-54.1948	1/1:47:0,46,0:0:0:46,0:1644,0:-147.923,-13.8474,0,-147.923,-13.8474,-147.923	1/1:79:0,79,0:0:0:79,0:2799,0:-252.142,-23.7814,0,-252.142,-23.7814,-252.142
chr03	22683062	.	CGTAGT	TGTGGT,CGTGGT	93132	PASS	AB=0.444072,0.54722;ABP=43.5731,31.9259;AC=153,33;AF=0.822581,0.177419;AN=186;AO=3522,845;CIGAR=1X2M1X2M,3M1X2M;DP=4412;DPB=4411.5;DPRA=3.4146,1.16475;EPP=7650.94,1837.9;EPPR=0;GTI=1;LEN=6,1;MEANALT=1.81522,2.38235;MQM=59.6746,59.9337;MQMR=0;NS=93;NUMALT=2;ODDS=0.811985;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=123293,29578;QR=0;RO=0;RPL=3522,845;RPP=7650.94,1837.9;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=7650.94,1837.9;SAR=3522,845;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,23,7:0:0:23,7:790,240:-83.9762,-19.8275,-12.9038,-64.4916,0,-62.3844	1/2:34:0,13,21:0:0:13,21:456,748:-98.4242,-61.3237,-57.4103,-37.4532,0,-31.1315	1/2:138:0,63,72:0:0:63,72:2193,2530:-384.25,-205.977,-187.012,-178.32,0,-156.646	1/1:73:0,71,1:0:0:71,1:2493,32:-223.995,-21.3731,0,-221.417,-18.8147,-221.116	1/1:11:0,11,0:0:0:11,0:384,0:-34.8924,-3.31133,0,-34.8924,-3.31133,-34.8924	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:36:0,36,0:0:0:36,0:1221,0:-110.185,-10.8371,0,-110.185,-10.8371,-110.185	1/1:48:0,48,0:0:0:48,0:1695,0:-152.678,-14.4494,0,-152.678,-14.4494,-152.678	1/1:49:0,49,0:0:0:49,0:1722,0:-155.256,-14.7505,0,-155.256,-14.7505,-155.256	1/2:46:0,18,28:0:0:18,28:633,961:-129.897,-78.3692,-72.9507,-51.8762,0,-43.4473	1/1:23:0,21,0:0:0:21,0:724,0:-65.0415,-6.32163,0,-65.0415,-6.32163,-65.0415	1/1:91:0,89,0:0:0:89,0:3092,0:-278.152,-26.7917,0,-278.152,-26.7917,-278.152	1/2:95:0,42,53:0:0:42,53:1474,1851:-270.875,-150.915,-138.272,-120.31,0,-104.356	1/1:25:0,24,0:0:0:24,0:842,0:-75.7746,-7.22472,0,-75.7746,-7.22472,-75.7746	1/1:48:0,48,0:0:0:48,0:1698,0:-153.104,-14.4494,0,-153.104,-14.4494,-153.104	1/1:36:0,36,0:0:0:36,0:1256,0:-113.336,-10.8371,0,-113.336,-10.8371,-113.336	2/2:14:0,0,14:0:0:0,14:0,491:-44.5211,-44.5211,-44.5211,-4.21442,-4.21442,0	1/1:18:0,18,0:0:0:18,0:640,0:-57.929,-5.41854,0,-57.929,-5.41854,-57.929	1/2:26:0,20,6:0:0:20,6:696,203:-73.3796,-16.795,-10.7744,-56.925,0,-55.1189	1/1:69:0,69,0:0:0:69,0:2420,0:-218.054,-20.7711,0,-218.054,-20.7711,-218.054	1/1:110:0,109,0:0:0:109,0:3802,0:-341.945,-32.8123,0,-341.945,-32.8123,-341.945	1/1:68:0,67,0:0:0:67,0:2345,0:-210.927,-20.169,0,-210.927,-20.169,-210.927	1/1:41:0,41,0:0:0:41,0:1426,0:-128.629,-12.3422,0,-128.629,-12.3422,-128.629	1/1:30:0,30,0:0:0:30,0:1051,0:-94.8992,-9.0309,0,-94.8992,-9.0309,-94.8992	1/1:49:0,49,0:0:0:49,0:1696,0:-152.906,-14.7505,0,-152.906,-14.7505,-152.906	1/2:146:0,57,88:0:0:57,88:2020,3120:-418.754,-254.198,-237.04,-164.569,0,-138.079	1/1:150:0,149,0:0:0:149,0:5172,0:-465.244,-44.8535,0,-465.244,-44.8535,-465.244	1/2:25:0,13,12:0:0:13,12:458,420:-71.8117,-34.5217,-30.6083,-37.641,0,-34.0287	1/1:99:0,98,0:0:0:98,0:3452,0:-310.581,-29.5009,0,-310.581,-29.5009,-310.581	1/2:41:0,36,5:0:0:36,5:1274,176:-118.448,-14.6799,-3.84279,-104.121,0,-102.616	1/1:34:0,34,0:0:0:34,0:1180,0:-106.501,-10.235,0,-106.501,-10.235,-106.501	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	2/2:12:0,1,11:0:0:1,11:36,378:-33.9921,-31.0579,-30.7569,-3.31133,-0.0191874,0	1/1:1:0,1,0:0:0:1,0:35,0:-3.49863,-0.30103,0,-3.49863,-0.30103,-3.49863	1/1:9:0,9,0:0:0:9,0:320,0:-29.1344,-2.70927,0,-29.1344,-2.70927,-29.1344	1/1:16:0,14,0:0:0:14,0:490,0:-44.1209,-4.21442,0,-44.1209,-4.21442,-44.1209	1/1:157:0,155,0:0:0:155,0:5436,0:-489.097,-46.6597,0,-489.097,-46.6597,-489.097	1/1:54:0,50,0:0:0:50,0:1769,0:-159.136,-15.0515,0,-159.136,-15.0515,-159.136	1/2:30:0,17,13:0:0:17,13:600,455:-86.1832,-37.3221,-32.2046,-49.212,0,-45.2986	.:.:.:.:.:.:.:.	1/2:26:0,12,14:0:0:12,14:415,491:-74.0273,-40.3067,-36.6943,-34.0686,0,-29.8541	1/2:19:0,8,11:0:0:8,11:278,388:-54.5455,-31.946,-29.5378,-22.9491,0,-19.6377	1/1:47:0,46,0:0:0:46,0:1572,0:-141.53,-13.8474,0,-141.53,-13.8474,-141.53	1/1:28:0,27,0:0:0:27,0:957,0:-86.1319,-8.12781,0,-86.1319,-8.12781,-86.1319	1/1:31:0,31,0:0:0:31,0:1095,0:-98.8587,-9.33193,0,-98.8587,-9.33193,-98.8587	1/1:59:0,59,0:0:0:59,0:2073,0:-186.838,-17.7608,0,-186.838,-17.7608,-186.838	1/1:37:0,37,0:0:0:37,0:1268,0:-114.398,-11.1381,0,-114.398,-11.1381,-114.398	1/1:89:0,88,1:0:0:88,1:3059,36:-275.103,-26.4906,0,-272.165,-23.1934,-271.864	1/1:44:0,44,0:0:0:44,0:1558,0:-140.487,-13.2453,0,-140.487,-13.2453,-140.487	1/2:54:0,15,38:0:0:15,38:527,1344:-152.363,-109.471,-104.956,-42.8936,0,-31.4545	1/1:89:0,89,0:0:0:89,0:3146,0:-283.362,-26.7917,0,-283.362,-26.7917,-283.362	1/1:5:0,5,0:0:0:5,0:173,0:-15.9093,-1.50515,0,-15.9093,-1.50515,-15.9093	1/2:64:0,39,25:0:0:39,25:1370,871:-182.68,-71.1797,-59.4395,-111.85,0,-104.324	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:3:0,1,2:0:0:1,2:36,68:-8.79971,-5.85565,-5.55462,-3.29724,0,-2.69518	1/2:69:0,33,35:0:0:33,35:1141,1220:-192.01,-99.3004,-89.3664,-92.793,0,-82.2569	1/2:23:0,11,12:0:0:11,12:394,411:-65.8452,-33.7055,-30.3942,-32.4902,0,-28.8779	1/1:4:0,4,0:0:0:4,0:141,0:-13.037,-1.20412,0,-13.037,-1.20412,-13.037	1/2:12:0,6,6:0:0:6,6:205,208:-33.8874,-17.2529,-15.4467,-16.9785,0,-15.1723	1/1:31:0,30,0:0:0:30,0:1061,0:-95.5008,-9.0309,0,-95.5008,-9.0309,-95.5008	1/1:64:0,62,0:0:0:62,0:2186,0:-196.674,-18.6639,0,-196.674,-18.6639,-196.674	1/1:3:0,3,0:0:0:3,0:106,0:-9.88916,-0.90309,0,-9.88916,-0.90309,-9.88916	1/1:67:0,66,0:0:0:66,0:2289,0:-205.988,-19.868,0,-205.988,-19.868,-205.988	1/1:91:0,90,1:0:0:90,1:3153,36:-283.624,-27.0927,0,-280.686,-23.7955,-280.385	1/1:24:0,24,0:0:0:24,0:843,0:-76.1819,-7.22472,0,-76.1819,-7.22472,-76.1819	1/1:21:0,21,0:0:0:21,0:722,0:-65.2699,-6.32163,0,-65.2699,-6.32163,-65.2699	1/1:59:0,58,0:0:0:58,0:2015,0:-181.345,-17.4597,0,-181.345,-17.4597,-181.345	1/2:108:0,27,80:0:0:27,80:940,2811:-305.221,-228.79,-220.662,-76.4205,0,-52.3381	1/1:11:0,11,0:0:0:11,0:393,0:-35.7108,-3.31133,0,-35.7108,-3.31133,-35.7108	1/1:25:0,25,0:0:0:25,0:867,0:-78.3441,-7.52575,0,-78.3441,-7.52575,-78.3441	1/1:34:0,34,0:0:0:34,0:1200,0:-108.305,-10.235,0,-108.305,-10.235,-108.305	1/1:8:0,8,0:0:0:8,0:286,0:-26.0856,-2.40824,0,-26.0856,-2.40824,-26.0856	1/2:83:0,32,51:0:0:32,51:1100,1796:-235.689,-146.38,-136.747,-89.6562,0,-74.3036	1/1:26:0,26,0:0:0:26,0:918,0:-82.8915,-7.82678,0,-82.8915,-7.82678,-82.8915	1/1:39:0,39,0:0:0:39,0:1373,0:-123.854,-11.7402,0,-123.854,-11.7402,-123.854	1/1:69:0,68,0:0:0:68,0:2398,0:-215.776,-20.47,0,-215.776,-20.47,-215.776	1/2:28:0,11,15:0:0:11,15:378,528:-73.6784,-42.9948,-39.6835,-30.6895,0,-26.1741	1/2:68:0,24,44:0:0:24,44:849,1556:-196.222,-127.086,-119.862,-69.4895,0,-56.2442	1/1:10:0,10,0:0:0:10,0:358,0:-32.5564,-3.0103,0,-32.5564,-3.0103,-32.5564	1/1:60:0,59,0:0:0:59,0:2024,0:-182.103,-17.7608,0,-182.103,-17.7608,-182.103	1/1:59:0,58,0:0:0:58,0:2032,0:-182.795,-17.4597,0,-182.795,-17.4597,-182.795	1/1:102:0,101,0:0:0:101,0:3563,0:-320.499,-30.404,0,-320.499,-30.404,-320.499	1/1:43:0,43,0:0:0:43,0:1505,0:-135.74,-12.9443,0,-135.74,-12.9443,-135.74	1/2:39:0,17,22:0:0:17,22:594,779:-112.127,-63.8094,-58.6919,-48.6693,0,-42.0466	1/2:38:0,23,15:0:0:23,15:812,528:-109.459,-43.3359,-36.4122,-66.475,0,-61.9596	1/2:90:0,41,48:0:0:41,48:1446,1687:-255.044,-137.306,-124.964,-117.73,0,-103.281	1/1:20:0,20,0:0:0:20,0:711,0:-64.3004,-6.0206,0,-64.3004,-6.0206,-64.3004	1/1:58:0,58,0:0:0:58,0:2039,0:-183.754,-17.4597,0,-183.754,-17.4597,-183.754	1/1:57:0,56,0:0:0:56,0:1947,0:-174.977,-16.8577,0,-174.977,-16.8577,-174.977	1/2:19:0,5,12:0:0:5,12:180,415:-48.405,-33.7146,-32.2094,-14.6908,0,-11.0784	1/2:70:0,32,38:0:0:32,38:1133,1311:-199.145,-106.849,-97.2163,-92.6455,0,-81.2063	1/2:65:0,23,41:0:0:23,41:785,1381:-175.658,-111.957,-105.033,-63.7576,0,-51.4153	1/1:48:0,48,0:0:0:48,0:1696,0:-152.698,-14.4494,0,-152.698,-14.4494,-152.698	1/1:79:0,77,0:0:0:77,0:2704,0:-243.277,-23.1793,0,-243.277,-23.1793,-243.277
chr03	22708840	.	T	C	248985	PASS	AB=0.518701;ABP=14.7058;AC=157;AF=0.835106;AN=188;AO=11203;CIGAR=1X;DP=13076;DPB=13076;DPRA=0;EPP=24035.6;EPPR=4011.66;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.982;MQMR=59.9727;NS=94;NUMALT=1;ODDS=4.2223;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=400706;QR=66875;RO=1866;RPL=34;RPP=24035.6;RPPR=4011.66;RPR=11169;RUN=1;SAF=11203;SAP=24330;SAR=0;SRF=1866;SRP=4054.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:11,25:11:396:25:888:-69.4019,0,-25.1457	1/1:281:1,280:1:36:280:10037:-899.663,-80.9912,0	0/1:140:74,66:74:2664:66:2356:-170.155,0,-197.861	1/1:319:0,319:0:0:319:11403:-1026.15,-96.0286,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:88:0,88:0:0:88:3133:-282.196,-26.4906,0	1/1:200:0,200:0:0:200:7146:-643.198,-60.206,0	1/1:169:0,169:0:0:169:6055:-545.052,-50.8741,0	1/1:102:1,101:1:36:101:3615:-321.956,-27.1068,0	0/1:181:82,98:82:2933:98:3520:-262.602,0,-209.796	1/1:93:0,93:0:0:93:3331:-300.007,-27.9958,0	1/1:91:0,91:0:0:91:3268:-294.34,-27.3937,0	0/1:79:37,42:37:1332:42:1489:-110.521,0,-96.4001	1/1:120:0,120:0:0:120:4301:-387.265,-36.1236,0	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	0/1:115:62,53:62:2224:53:1897:-136.389,0,-165.806	1/1:63:0,63:0:0:63:2232:-201.142,-18.9649,0	0/1:50:22,28:22:792:28:1008:-75.9849,0,-56.5542	1/1:333:1,332:1:36:332:11859:-1063.5,-96.6447,0	1/1:233:1,232:1:36:232:8302:-743.589,-66.5417,0	1/1:148:0,148:0:0:148:5245:-472.187,-44.5524,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:141:0,141:0:0:141:5051:-454.734,-42.4452,0	1/1:153:0,153:0:0:153:5454:-490.988,-46.0576,0	0/1:448:193,255:193:6898:255:9102:-684.292,0,-486.024	1/1:237:0,237:0:0:237:8471:-762.39,-71.3441,0	0/1:41:22,18:22:788:18:648:-46.2509,0,-58.8438	1/1:397:0,397:0:0:397:14235:-1280.9,-119.509,0	1/1:238:2,236:2:72:236:8438:-752.583,-64.8084,0	1/1:185:0,185:0:0:185:6613:-595.249,-55.6906,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:275:0,274:0:0:274:9844:-885.698,-82.4822,0	1/1:262:0,262:0:0:262:9379:-844.073,-78.8699,0	0/1:91:53,38:53:1908:38:1364:-95.667,0,-144.604	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:295:131,164:131:4685:164:5845:-437.357,0,-333.005	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/1:180:68,112:68:2436:112:4004:-306.365,0,-164.373	0/1:80:42,38:42:1500:38:1368:-99.3384,0,-111.212	1/1:88:0,88:0:0:88:3139:-282.736,-26.4906,0	1/1:93:0,93:0:0:93:3329:-299.827,-27.9958,0	1/1:206:1,205:1:36:205:7343:-657.319,-58.4139,0	1/1:245:0,244:0:0:244:8709:-783.443,-73.4513,0	1/1:169:0,169:0:0:169:6052:-544.539,-50.8741,0	0/1:267:129,137:129:4632:137:4908:-361.586,0,-336.756	1/1:231:0,231:0:0:231:8274:-744.611,-69.5379,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:229:100,129:100:3584:129:4624:-347.387,0,-253.831	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/1:194:103,91:103:3685:91:3219:-231.533,0,-273.451	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:39:21,18:21:752:18:640:-46.1891,0,-56.2661	1/1:131:1,130:1:36:130:4649:-414.973,-35.8367,0	1/1:163:0,163:0:0:163:5850:-526.608,-49.0679,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:443:0,443:0:0:443:15826:-1423.66,-133.356,0	1/1:335:0,335:0:0:335:11978:-1077.87,-100.845,0	1/1:170:1,168:1:36:168:5991:-535.771,-47.5607,0	1/1:116:0,116:0:0:116:4103:-369.454,-34.9195,0	1/1:155:4,151:4:129:151:5414:-475.457,-34.732,0	0/1:142:87,55:87:3105:55:1948:-132.847,0,-236.93	1/1:54:0,54:0:0:54:1935:-174.426,-16.2556,0	1/1:111:1,110:1:36:110:3947:-351.822,-29.8161,0	1/1:131:0,131:0:0:131:4642:-417.943,-39.4349,0	1/1:46:0,46:0:0:46:1640:-147.886,-13.8474,0	0/1:180:87,93:87:3124:93:3322:-245.011,0,-227.2	1/1:86:0,86:0:0:86:3075:-276.948,-25.8886,0	1/1:215:0,215:0:0:215:7725:-695.278,-64.7215,0	1/1:251:0,250:0:0:250:8960:-806.166,-75.2575,0	0/1:176:95,81:95:3397:81:2869:-205.463,0,-252.962	0/1:180:98,82:98:3520:82:2940:-210.648,0,-262.823	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:179:0,179:0:0:179:6399:-575.997,-53.8844,0	1/1:179:0,179:0:0:179:6399:-575.98,-53.8844,0	1/1:194:1,193:1:36:193:6928:-619.986,-54.8015,0	1/1:142:1,141:1:36:141:5037:-449.874,-39.148,0	0/1:80:36,44:36:1296:44:1572:-117.689,0,-92.8615	0/1:119:52,67:52:1872:67:2399:-180.344,0,-132.892	0/1:150:71,79:71:2548:79:2832:-209.964,0,-184.416	1/1:68:0,68:0:0:68:2444:-220.214,-20.47,0	1/1:82:0,82:0:0:82:2939:-264.736,-24.6845,0	1/1:104:0,104:0:0:104:3740:-336.799,-31.3071,0	0/1:50:27,23:27:963:23:824:-59.4318,0,-71.9344	0/1:119:53,66:53:1900:66:2360:-176.836,0,-135.455	0/1:94:55,39:55:1976:39:1404:-98.3625,0,-149.818	1/1:154:0,154:0:0:154:5510:-496.026,-46.3586,0	1/1:117:0,117:0:0:117:4175:-375.93,-35.2205,0
chr03	22731641	.	G	A	135658	PASS	AB=0.513724;ABP=6.58638;AC=150;AF=0.824176;AN=182;AO=6151;CIGAR=1X;DP=7225;DPB=7225;DPRA=20.0583;EPP=13359.7;EPPR=2335.17;GTI=1;LEN=1;MEANALT=1;MQM=59.986;MQMR=59.9935;NS=91;NUMALT=1;ODDS=8.75965;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220355;QR=38402;RO=1074;RPL=0;RPP=13359.7;RPPR=2335.17;RPR=6151;RUN=1;SAF=6151;SAP=13359.7;SAR=0;SRF=1074;SRP=2335.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:6,18:6:216:18:648:-51.4272,0,-12.5658	1/1:107:0,107:0:0:107:3832:-345.077,-32.2102,0	0/1:106:44,62:44:1576:62:2205:-166.804,0,-110.222	1/1:94:0,94:0:0:94:3342:-300.995,-28.2968,0	1/1:54:0,54:0:0:54:1929:-173.885,-16.2556,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:157:0,157:0:0:157:5644:-508.077,-47.2617,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:123:49,74:49:1741:74:2652:-201.899,0,-119.946	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:87:32,55:32:1148:55:1980:-152.285,0,-77.4402	1/1:68:0,68:0:0:68:2440:-219.854,-20.47,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:65:31,34:31:1112:34:1224:-90.9001,0,-80.8244	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	0/1:22:11,11:11:392:11:396:-29.3601,0,-28.9974	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:101:0,101:0:0:101:3622:-326.184,-30.404,0	1/1:61:0,61:0:0:61:2181:-196.554,-18.3628,0	1/1:65:0,65:0:0:65:2321:-209.148,-19.567,0	1/1:153:0,153:0:0:153:5500:-495.124,-46.0576,0	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	0/1:303:168,135:168:6001:135:4856:-345.979,0,-448.983	1/1:137:0,137:0:0:137:4913:-442.318,-41.2411,0	0/1:30:10,20:10:360:20:720:-56.0979,0,-23.7134	1/1:169:0,169:0:0:169:6057:-545.231,-50.8741,0	1/1:149:1,148:1:36:148:5297:-473.265,-41.2552,0	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:198:0,198:0:0:198:7106:-639.596,-59.6039,0	1/1:207:3,204:3:104:204:7301:-647.437,-52.6104,0	0/1:42:22,20:22:779:20:720:-52.4855,0,-57.7888	.:.:.:.:.:.:.:.	0/1:96:40,56:40:1436:56:1993:-150.743,0,-100.639	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:102:55,47:55:1976:47:1664:-119.34,0,-147.41	0/1:56:29,27:29:1031:27:972:-70.9402,0,-76.2449	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:133:0,133:0:0:133:4756:-428.196,-40.037,0	1/1:91:0,91:0:0:91:3249:-292.63,-27.3937,0	1/1:145:0,145:0:0:145:5175:-465.891,-43.6494,0	1/1:89:0,89:0:0:89:3191:-287.413,-26.7917,0	0/1:81:44,37:44:1584:37:1328:-95.4388,0,-118.468	1/1:128:0,128:0:0:128:4580:-412.365,-38.5318,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:95:41,54:41:1476:54:1929:-145.287,0,-104.538	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:85:39,46:39:1404:46:1648:-123.021,0,-101.072	0/1:49:29,20:29:1036:20:716:-50.0172,0,-78.8034	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:21:7,14:7:233:14:504:-39.3765,0,-14.9727	1/1:46:0,46:0:0:46:1618:-145.905,-13.8474,0	1/1:121:0,121:0:0:121:4356:-392.212,-36.4246,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:143:0,143:0:0:143:5106:-459.677,-43.0473,0	1/1:295:1,294:1:36:294:10505:-941.765,-85.2056,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:43:0,43:0:0:43:1533:-138.261,-12.9443,0	1/1:153:1,152:1:36:152:5403:-482.798,-42.4593,0	0/1:72:47,25:47:1665:25:892:-58.9255,0,-128.461	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:110:58,52:58:2072:52:1872:-135.646,0,-153.637	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:127:0,127:0:0:127:4544:-409.121,-38.2308,0	1/1:94:0,94:0:0:94:3360:-302.615,-28.2968,0	0/1:89:50,39:50:1788:39:1404:-99.8676,0,-134.411	0/1:94:44,50:44:1580:50:1785:-132.629,0,-114.195	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:80:1,79:1:36:79:2813:-249.808,-20.4841,0	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	1/1:156:0,156:0:0:156:5581:-502.406,-46.9607,0	1/1:110:0,110:0:0:110:3960:-356.583,-33.1133,0	0/1:41:20,21:20:720:21:756:-56.025,0,-52.7865	0/1:75:30,45:30:1071:45:1614:-122.973,0,-74.1244	0/1:132:57,75:57:2048:75:2700:-203.507,0,-144.856	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/1:54:26,28:26:913:28:1008:-74.7807,0,-66.2284	0/1:61:37,24:37:1324:24:864:-59.7197,0,-101.093	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:91:0,91:0:0:91:3249:-292.63,-27.3937,0
chr03	22731843	.	A	G	137257	PASS	AB=0.490196;ABP=5.01146;AC=157;AF=0.835106;AN=188;AO=6273;CIGAR=1X;DP=7509;DPB=7509;DPRA=0;EPP=13563.9;EPPR=2663.09;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9933;MQMR=59.9968;NS=94;NUMALT=1;ODDS=1.25743;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223633;QR=44125;RO=1233;RPL=6266;RPP=13563.9;RPPR=2663.09;RPR=7;RUN=1;SAF=6273;SAP=13624.7;SAR=0;SRF=1233;SRP=2680.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:16,14:16:576:14:477:-34.2222,0,-43.1441	1/1:129:0,129:0:0:129:4606:-414.703,-38.8329,0	0/1:87:41,46:41:1476:46:1622:-120.075,0,-106.947	1/1:122:0,122:0:0:122:4361:-392.663,-36.7257,0	1/1:49:0,49:0:0:49:1741:-156.972,-14.7505,0	1/1:27:0,27:0:0:27:953:-86.0833,-8.12781,0	1/1:90:0,90:0:0:90:3190:-287.322,-27.0927,0	1/1:158:0,158:0:0:158:5604:-504.481,-47.5627,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:115:58,57:58:2076:57:2009:-146.461,0,-152.492	1/1:53:0,53:0:0:53:1886:-170.018,-15.9546,0	1/1:85:0,85:0:0:85:3021:-272.12,-25.5876,0	0/1:62:22,40:22:792:40:1428:-110.154,0,-52.9418	1/1:79:0,79:0:0:79:2806:-252.777,-23.7814,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:72:28,44:28:993:44:1579:-120.727,0,-68.0083	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:40:31,9:31:1116:9:320:-17.1012,0,-88.7105	1/1:122:0,122:0:0:122:4368:-393.292,-36.7257,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:119:2,117:2:72:117:4149:-366.755,-28.9858,0	1/1:100:0,100:0:0:100:3562:-320.789,-30.103,0	1/1:118:0,118:0:0:118:4216:-379.621,-35.5215,0	1/1:62:0,62:0:0:62:2186:-197.003,-18.6639,0	0/1:344:170,174:170:6051:174:6176:-452.383,0,-441.138	1/1:96:0,96:0:0:96:3402:-306.393,-28.8989,0	0/1:43:25,18:25:900:18:644:-45.3463,0,-68.3767	1/1:146:0,146:0:0:146:5225:-470.386,-43.9504,0	1/1:106:3,103:3:108:103:3685:-321.776,-21.834,0	1/1:84:0,84:0:0:84:3005:-270.68,-25.2865,0	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:207:2,205:2:72:205:7298:-650.034,-55.4765,0	1/1:188:0,188:0:0:188:6704:-603.436,-56.5936,0	0/1:52:31,21:31:1116:21:743:-51.5398,0,-85.0981	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:96:45,51:45:1612:51:1828:-135.902,0,-116.471	0/1:36:24,12:24:860:12:432:-28.3841,0,-66.8848	0/1:78:34,44:34:1212:44:1573:-118.381,0,-85.906	0/1:64:34,30:34:1224:30:1076:-77.8869,0,-91.2011	1/1:75:0,75:0:0:75:2654:-239.104,-22.5773,0	1/1:81:0,81:0:0:81:2884:-259.796,-24.3834,0	1/1:79:0,79:0:0:79:2808:-252.958,-23.7814,0	1/1:171:0,171:0:0:171:6110:-550.001,-51.4761,0	1/1:99:0,99:0:0:99:3536:-318.447,-29.802,0	0/1:144:68,76:68:2448:76:2711:-200.885,0,-177.226	1/1:36:0,35:0:0:35:1243:-111.814,-10.5361,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:111:50,61:50:1785:61:2196:-164.491,0,-127.516	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	0/1:21:10,11:10:360:11:392:-29.2984,0,-26.4227	0/1:82:61,21:61:2165:21:752:-43.3218,0,-170.431	0/1:63:27,36:27:960:36:1280:-96.5383,0,-67.7504	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	1/1:68:0,68:0:0:68:2405:-216.598,-20.47,0	1/1:93:1,92:1:36:92:3273:-291.192,-24.3975,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:166:1,165:1:36:165:5905:-527.96,-46.3727,0	1/1:247:4,243:4:144:243:8652:-765.363,-61.0408,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:91:0,91:0:0:91:3207:-288.851,-27.3937,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	0/1:76:51,25:51:1828:25:900:-58.4427,0,-141.923	1/1:20:0,20:0:0:20:715:-64.6773,-6.0206,0	1/1:36:0,36:0:0:36:1286:-116.043,-10.8371,0	1/1:86:0,86:0:0:86:3072:-276.709,-25.8886,0	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	0/1:93:60,33:60:2152:33:1184:-78.8725,0,-165.951	1/1:42:0,42:0:0:42:1497:-135.023,-12.6433,0	1/1:116:0,116:0:0:116:4095:-368.733,-34.9195,0	1/1:119:0,119:0:0:119:4261:-383.667,-35.8226,0	0/1:103:43,58:43:1533:58:2069:-155.715,0,-107.497	0/1:99:44,55:44:1584:55:1961:-146.961,0,-113.05	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:76:0,76:0:0:76:2717:-244.772,-22.8783,0	1/1:76:0,76:0:0:76:2708:-243.965,-22.8783,0	1/1:178:0,178:0:0:178:6378:-574.108,-53.5833,0	1/1:115:0,115:0:0:115:4120:-370.983,-34.6185,0	0/1:55:24,31:24:864:31:1112:-83.8347,0,-61.5259	0/1:74:42,32:42:1512:32:1125:-79.2798,0,-114.098	0/1:143:68,75:68:2425:75:2660:-196.598,0,-175.457	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	1/1:80:0,80:0:0:80:2837:-255.568,-24.0824,0	1/1:53:0,53:0:0:53:1874:-168.935,-15.9546,0	0/1:40:24,16:24:845:16:576:-40.1338,0,-64.3259	0/1:61:32,29:32:1148:29:1044:-75.912,0,-85.267	0/1:69:38,31:38:1364:31:1108:-79.2599,0,-102.29	1/1:83:0,83:0:0:83:2972:-267.713,-24.9855,0	1/1:100:0,100:0:0:100:3592:-323.486,-30.103,0
chr03	22766020	.	TGAT	CGAG,CGAT	182529	PASS	AB=0.468515,0.527379;ABP=28.1702,22.0348;AC=155,31;AF=0.833333,0.166667;AN=186;AO=6832,1553;CIGAR=1X2M1X,1X3M;DP=8417;DPB=8417;DPRA=0,1.19011;EPP=14838.5,3375.31;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.72043,2.31579;MQM=59.8904,59.9961;MQMR=0;NS=93;NUMALT=2;ODDS=1.19918;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=242085,55417;QR=0;RO=0;RPL=6832,1553;RPP=14838.5,3375.31;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=14838.5,3375.31;SAR=6832,1553;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,5,21:0:0:5,21:172,744:-74.9291,-60.9627,-59.4575,-14.3123,0,-7.99062	1/1:140:0,140,0:0:0:140,0:4946,0:-445.294,-42.1442,0,-445.294,-42.1442,-445.294	1/2:71:0,31,40:0:0:31,40:1110,1436:-208.018,-117.496,-108.165,-90.8798,0,-78.8386	1/1:123:0,122,0:0:0:122,0:4329,0:-389.374,-36.7257,0,-389.374,-36.7257,-389.374	1/1:24:0,24,0:0:0:24,0:843,0:-76.188,-7.22472,0,-76.188,-7.22472,-76.188	1/1:64:0,64,0:0:0:64,0:2217,0:-199.792,-19.2659,0,-199.792,-19.2659,-199.792	1/1:105:0,104,0:0:0:104,0:3675,0:-330.592,-31.3071,0,-330.592,-31.3071,-330.592	1/1:141:0,140,0:0:0:140,0:4960,0:-446.231,-42.1442,0,-446.231,-42.1442,-446.231	1/1:82:0,82,0:0:0:82,0:2899,0:-261.147,-24.6845,0,-261.147,-24.6845,-261.147	1/2:144:0,76,68:0:0:76,68:2709,2444:-420.563,-199.745,-176.866,-221.177,0,-200.707	1/1:113:0,113,0:0:0:113,0:3985,0:-358.841,-34.0164,0,-358.841,-34.0164,-358.841	1/1:105:0,104,0:0:0:104,0:3683,0:-331.302,-31.3071,0,-331.302,-31.3071,-331.302	1/2:90:0,42,48:0:0:42,48:1491,1703:-260.567,-139.105,-126.462,-121.817,0,-107.367	1/1:115:0,114,0:0:0:114,0:4033,0:-362.801,-34.3174,0,-362.801,-34.3174,-362.801	1/1:86:0,86,0:0:0:86,0:3051,0:-274.817,-25.8886,0,-274.817,-25.8886,-274.817	1/1:59:0,59,0:0:0:59,0:2099,0:-189.18,-17.7608,0,-189.18,-17.7608,-189.18	1/2:140:0,62,76:0:0:62,76:2201,2703:-399.608,-220.276,-201.613,-179.327,0,-156.449	1/1:67:0,67,0:0:0:67,0:2371,0:-213.156,-20.169,0,-213.156,-20.169,-213.156	1/2:72:0,29,42:0:0:29,42:1037,1512:-207.927,-123.372,-114.642,-84.5543,0,-71.911	1/1:88:0,88,0:0:0:88,0:3137,0:-282.555,-26.4906,0,-282.555,-26.4906,-282.555	1/1:128:0,128,0:0:0:128,0:4547,0:-409.362,-38.5318,0,-409.362,-38.5318,-409.362	1/1:20:0,20,0:0:0:20,0:713,0:-64.4973,-6.0206,0,-64.4973,-6.0206,-64.4973	1/1:89:0,89,0:0:0:89,0:3162,0:-284.806,-26.7917,0,-284.806,-26.7917,-284.806	1/1:112:0,112,0:0:0:112,0:3969,0:-357.404,-33.7154,0,-357.404,-33.7154,-357.404	1/1:66:0,66,0:0:0:66,0:2328,0:-209.777,-19.868,0,-209.777,-19.868,-209.777	1/2:195:0,106,89:0:0:106,89:3687,3181:-559.448,-259.721,-227.812,-300.08,0,-273.288	1/1:182:0,182,0:0:0:182,0:6432,0:-578.738,-54.7875,0,-578.738,-54.7875,-578.738	1/2:47:0,17,30:0:0:17,30:608,1064:-136.614,-87.0408,-81.9233,-49.93,0,-40.8991	1/1:227:0,226,0:0:0:226,0:8027,0:-722.192,-68.0328,0,-722.192,-68.0328,-722.192	1/1:215:0,212,3:0:0:212,3:7502,108:-674.869,-63.8184,0,-666.056,-54.6463,-665.153	1/1:163:0,161,0:0:0:161,0:5743,0:-516.606,-48.4658,0,-516.606,-48.4658,-516.606	1/2:2:0,1,1:0:0:1,1:30,36:-5.66589,-3.29724,-2.99621,-2.69854,0,-2.39751	1/2:14:0,7,7:0:0:7,7:248,248:-40.7598,-20.557,-18.4498,-20.557,0,-18.4498	1/1:12:0,12,0:0:0:12,0:431,0:-39.1307,-3.61236,0,-39.1307,-3.61236,-39.1307	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:5:0,5,0:0:0:5,0:173,0:-15.9093,-1.50515,0,-15.9093,-1.50515,-15.9093	1/1:180:0,179,0:0:0:179,0:6351,0:-571.255,-53.8844,0,-571.255,-53.8844,-571.255	1/1:121:0,121,0:0:0:121,0:4320,0:-388.979,-36.4246,0,-388.979,-36.4246,-388.979	1/2:118:0,51,65:0:0:51,65:1805,2332:-337.226,-190.213,-174.86,-147.009,0,-127.442	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:176:0,84,90:0:0:84,90:2942,3166:-497.142,-257.764,-232.477,-239.423,0,-212.33	1/2:50:0,17,33:0:0:17,33:611,1184:-146.781,-96.9343,-91.8168,-50.2057,0,-40.2717	1/2:84:0,35,48:0:0:35,48:1242,1720:-241.577,-140.384,-129.848,-101.295,0,-86.8459	1/2:118:0,43,75:0:0:43,75:1514,2695:-343.468,-220.217,-207.272,-123.606,0,-101.029	1/1:78:0,78,0:0:0:78,0:2723,0:-245.311,-23.4803,0,-245.311,-23.4803,-245.311	1/1:39:0,39,0:0:0:39,0:1374,0:-123.957,-11.7402,0,-123.957,-11.7402,-123.957	1/1:63:0,63,0:0:0:63,0:2227,0:-200.694,-18.9649,0,-200.694,-18.9649,-200.694	1/1:93:0,91,2:0:0:91,2:3227,68:-290.313,-27.3937,0,-284.797,-21.5381,-284.195	1/1:81:0,80,0:0:0:80,0:2862,0:-257.458,-24.0824,0,-257.458,-24.0824,-257.458	1/2:156:0,99,57:0:0:99,57:3486,2044:-450.869,-167.073,-137.271,-284.152,0,-266.993	1/1:59:0,58,0:0:0:58,0:2068,0:-186.031,-17.4597,0,-186.031,-17.4597,-186.031	1/1:14:0,14,0:0:0:14,0:502,0:-45.5172,-4.21442,0,-45.5172,-4.21442,-45.5172	1/2:81:0,39,42:0:0:39,42:1395,1491:-235.593,-121.841,-110.1,-114.109,0,-101.466	1/1:58:0,58,0:0:0:58,0:2057,0:-185.4,-17.4597,0,-185.4,-17.4597,-185.4	1/2:15:0,5,10:0:0:5,10:173,356:-43.4259,-29.3709,-27.8658,-14.4042,0,-11.3939	1/2:109:0,51,58:0:0:51,58:1812,2059:-315.769,-168.115,-152.763,-148.009,0,-130.549	1/2:30:0,15,15:0:0:15,15:522,540:-86.8587,-44.4211,-39.9056,-42.7915,0,-38.276	1/1:1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chr03	22803953	.	G	A	72262.2	PASS	AB=0.49567;ABP=3.25479;AC=157;AF=0.835106;AN=188;AO=3331;CIGAR=1X;DP=4096;DPB=4096;DPRA=0;EPP=7236.18;EPPR=1659.84;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9544;MQMR=59.9856;NS=94;NUMALT=1;ODDS=0.724493;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119235;QR=27302;RO=763;RPL=3331;RPP=7236.18;RPPR=1659.84;RPR=0;RUN=1;SAF=0;SAP=7236.18;SAR=3331;SRF=0;SRP=1659.84;SRR=763;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:208:5:180:-13.2407,0,-15.7478	1/1:53:0,53:0:0:53:1900:-171.276,-15.9546,0	0/1:86:50,36:50:1776:36:1295:-90.937,0,-134.234	1/1:68:0,68:0:0:68:2440:-219.853,-20.47,0	1/1:32:1,31:1:36:31:1116:-97.1534,-6.03469,0	1/1:35:0,35:0:0:35:1256:-113.328,-10.5361,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:38:17,21:17:608:21:740:-55.4837,0,-43.6129	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	1/1:54:0,54:0:0:54:1936:-174.503,-16.2556,0	0/1:60:40,20:40:1440:20:720:-47.067,0,-111.836	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	0/1:73:34,39:34:1216:39:1396:-103.964,0,-87.7714	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:66:37,29:37:1320:29:1040:-74.0464,0,-99.234	1/1:48:0,48:0:0:48:1722:-155.266,-14.4494,0	1/1:59:1,58:1:36:58:2080:-183.872,-14.1625,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:27:0,27:0:0:27:964:-87.0763,-8.12781,0	1/1:33:0,33:0:0:33:1165:-105.155,-9.93399,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:83:38,45:38:1364:45:1616:-120.745,0,-98.0752	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2693	1/1:84:0,84:0:0:84:2988:-269.153,-25.2865,0	1/1:33:1,32:1:32:32:1152:-100.791,-6.73468,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:145:1,144:1:36:144:5163:-461.211,-40.0511,0	1/1:33:0,33:0:0:33:1171:-105.696,-9.93399,0	0/1:88:42,46:42:1495:46:1637:-121.126,0,-108.353	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:47:15,32:15:536:32:1148:-89.4814,0,-34.4264	0/1:74:38,36:38:1360:36:1296:-94.6677,0,-100.424	0/1:32:14,18:14:500:18:628:-47.2125,0,-35.7032	0/1:68:39,29:39:1396:29:1040:-73.4443,0,-105.469	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	1/1:36:0,36:0:0:36:1288:-116.215,-10.8371,0	1/1:43:0,42:0:0:42:1493:-134.34,-12.6433,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:44:18,26:18:648:26:936:-71.3141,0,-45.4066	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:27:13,14:13:468:14:500:-37.2084,0,-34.3318	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:76:1,75:1:36:75:2692:-238.923,-19.28,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:26:15,11:15:536:11:396:-28.1513,0,-40.748	1/1:60:1,59:1:36:59:2120:-187.28,-14.4635,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:83:0,83:0:0:83:2980:-268.43,-24.9855,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	1/1:21:0,21:0:0:21:743:-67.1934,-6.32163,0	1/1:76:0,76:0:0:76:2710:-244.097,-22.8783,0	1/1:29:0,29:0:0:29:1036:-93.5457,-8.72987,0	0/1:76:37,39:37:1320:39:1388:-102.341,0,-96.2237	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8205	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:32:0,32:0:0:32:1144:-103.269,-9.63296,0	1/1:35:0,35:0:0:35:1245:-112.353,-10.5361,0	1/1:54:0,54:0:0:54:1936:-174.514,-16.2556,0	1/1:75:1,74:1:36:74:2648:-234.968,-18.979,0	0/1:60:27,33:27:964:33:1168:-87.3649,0,-69.015	0/1:83:44,38:44:1572:38:1368:-98.5225,0,-116.874	0/1:102:52,50:52:1868:50:1781:-129.867,0,-137.694	1/1:41:0,41:0:0:41:1449:-130.704,-12.3422,0	1/1:57:0,57:0:0:57:2032:-183.145,-17.1587,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:70:31,39:31:1116:39:1404:-105.587,0,-79.6796	0/1:105:51,54:51:1836:54:1925:-141.917,0,-133.912	0/1:39:25,14:25:887:14:504:-33.9579,0,-68.4079	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:107:0,107:0:0:107:3804:-342.558,-32.2102,0
chr03	22809199	.	C	A	62877.2	PASS	AB=0.44186;ABP=47.1972;AC=155;AF=0.833333;AN=186;AO=4306;CIGAR=1X;DP=5151;DPB=5151;DPRA=0;EPP=1329.74;EPPR=33.6144;GTI=1;LEN=1;MEANALT=1.02151;MQM=21.8082;MQMR=35.8007;NS=93;NUMALT=1;ODDS=2.31828;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151990;QR=30114;RO=843;RPL=1342;RPP=1329.74;RPPR=33.6144;RPR=2964;RUN=1;SAF=4306;SAP=9353.37;SAR=0;SRF=843;SRP=1833.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:19,12:19:676:12:420:-11.1333,0,-48.4321	1/1:73:0,73:0:0:73:2584:-129.209,-21.9752,0	0/1:68:54,14:54:1932:14:480:-4.98994,0,-141.472	1/1:184:0,184:0:0:184:6489:-362.45,-55.3895,0	1/1:31:0,31:0:0:31:1092:-61.3629,-9.33193,0	1/1:42:0,42:0:0:42:1488:-75.2831,-12.6433,0	1/1:99:0,99:0:0:99:3455:-194.017,-29.802,0	1/1:75:0,75:0:0:75:2625:-129.35,-22.5773,0	1/1:33:0,33:0:0:33:1149:-61.1767,-9.93399,0	0/1:58:25,33:25:883:33:1149:-49.0226,0,-53.8564	1/1:20:1,19:1:36:19:680:-33.6659,-2.42233,0	1/1:42:0,42:0:0:42:1496:-70.9283,-12.6433,0	0/1:52:31,21:31:1107:21:752:-20.4511,0,-76.4195	1/1:33:0,33:0:0:33:1168:-60.1735,-9.93399,0	1/1:30:0,30:0:0:30:1068:-57.7023,-9.0309,0	1/1:28:0,28:0:0:28:996:-51.7646,-8.42884,0	0/1:33:12,21:12:424:21:748:-25.9824,0,-25.6119	1/1:34:0,34:0:0:34:1212:-58.1243,-10.235,0	0/1:25:13,12:13:459:12:432:-13.0919,0,-30.096	1/1:100:0,100:0:0:100:3488:-200.125,-30.103,0	1/1:80:0,80:0:0:80:2825:-153.752,-24.0824,0	1/1:84:0,84:0:0:84:2977:-178.034,-25.2865,0	1/1:47:0,47:0:0:47:1664:-94.9527,-14.1484,0	1/1:54:0,54:0:0:54:1904:-102.643,-16.2556,0	1/1:35:0,35:0:0:35:1244:-68.3561,-10.5361,0	0/1:155:58,97:58:2080:97:3425:-155.978,0,-119.897	1/1:129:0,129:0:0:129:4596:-243.612,-38.8329,0	0/1:15:6,9:6:216:9:320:-12.2213,0,-12.2845	1/1:189:0,189:0:0:189:6697:-400.998,-56.8947,0	1/1:78:3,75:3:108:75:2653:-134.116,-13.5445,0	1/1:80:0,80:0:0:80:2813:-159.063,-24.0824,0	0/1:2:1,1:1:36:1:36:-1.48452,0,-2.94646	0/1:8:4,4:4:140:4:140:-5.29406,0,-8.74978	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-3.5939,-0.60206,0	1/1:8:0,8:0:0:8:284:-14.0628,-2.40824,0	1/1:110:0,110:0:0:110:3912:-228.727,-33.1133,0	1/1:110:0,110:0:0:110:3893:-208.455,-33.1133,0	0/1:20:11,9:11:396:9:320:-9.47853,0,-27.5777	1/1:2:0,2:0:0:2:72:-3.96451,-0.60206,0	0/1:84:38,46:38:1352:46:1636:-63.1885,0,-85.6537	0/1:13:6,7:6:216:7:252:-8.7274,0,-13.1919	0/1:67:34,33:34:1220:33:1157:-43.1349,0,-78.4014	0/1:25:16,9:16:567:9:324:-10.0224,0,-36.4843	1/1:31:0,31:0:0:31:1100:-57.7158,-9.33193,0	1/1:45:0,45:0:0:45:1596:-96.3325,-13.5464,0	1/1:57:0,57:0:0:57:2040:-101.483,-17.1587,0	1/1:109:0,109:0:0:109:3864:-215.801,-32.8123,0	1/1:32:0,32:0:0:32:1116:-64.7513,-9.63296,0	0/1:64:33,31:33:1163:31:1077:-41.4649,0,-74.6523	1/1:92:0,92:0:0:92:3236:-196.196,-27.6948,0	1/1:4:0,4:0:0:4:140:-7.97027,-1.20412,0	0/1:72:46,26:46:1648:26:920:-24.8117,0,-118.223	1/1:33:0,33:0:0:33:1172:-70.1741,-9.93399,0	0/1:8:1,7:1:32:7:248:-9.6861,0,-0.694492	0/1:78:43,35:43:1536:35:1232:-43.9229,0,-98.2658	0/1:25:10,15:10:360:15:532:-21.68,0,-20.6324	1/1:1:0,1:0:0:1:36:-2.37353,-0.30103,0	0/1:8:4,4:4:144:4:144:-6.54511,0,-10.213	1/1:47:0,47:0:0:47:1636:-89.2157,-14.1484,0	1/1:58:0,58:0:0:58:2037:-111.582,-17.4597,0	1/1:5:0,5:0:0:5:165:-9.33195,-1.50515,0	1/1:190:0,190:0:0:190:6732:-402.407,-57.1957,0	1/1:48:1,47:1:36:47:1656:-90.8021,-11.4687,0	1/1:11:0,11:0:0:11:388:-22.6863,-3.31133,0	1/1:47:0,47:0:0:47:1656:-92.8257,-14.1484,0	1/1:104:0,104:0:0:104:3681:-206.289,-31.3071,0	0/1:101:81,20:81:2896:20:712:-9.98747,0,-197.756	1/1:7:0,7:0:0:7:248:-14.2845,-2.10721,0	1/1:43:0,43:0:0:43:1524:-76.3787,-12.9443,0	1/1:37:0,37:0:0:37:1309:-75.7018,-11.1381,0	1/1:22:0,22:0:0:22:743:-43.5613,-6.62266,0	0/1:92:49,43:49:1748:43:1512:-51.7715,0,-120.091	1/1:35:0,35:0:0:35:1252:-62.2647,-10.5361,0	1/1:84:0,84:0:0:84:2964:-161.984,-25.2865,0	1/1:91:0,91:0:0:91:3147:-183.497,-27.3937,0	0/1:80:53,27:53:1896:27:933:-23.2019,0,-136.966	0/1:59:26,33:26:932:33:1172:-43.5717,0,-61.8546	1/1:8:0,8:0:0:8:288:-14.3332,-2.40824,0	1/1:56:0,56:0:0:56:1980:-108.123,-16.8577,0	1/1:62:0,62:0:0:62:2208:-108.263,-18.6639,0	1/1:158:0,158:0:0:158:5526:-310.119,-47.5627,0	1/1:62:0,62:0:0:62:2183:-117.444,-18.6639,0	0/1:36:26,10:26:932:10:360:-8.23346,0,-60.0793	0/1:30:8,21:8:279:21:740:-31.9864,0,-12.634	0/1:67:40,27:40:1436:27:964:-32.5122,0,-89.7912	1/1:17:0,17:0:0:17:608:-29.1182,-5.11751,0	1/1:44:0,44:0:0:44:1564:-75.0372,-13.2453,0	1/1:39:0,39:0:0:39:1365:-66.4201,-11.7402,0	0/1:21:16,5:16:576:5:176:-3.07924,0,-38.4353	0/1:69:46,23:46:1652:23:816:-21.8759,0,-105.536	0/1:38:28,10:28:1000:10:352:-7.67619,0,-65.7185	1/1:79:0,79:0:0:79:2765:-159.101,-23.7814,0	1/1:56:0,56:0:0:56:1988:-108.957,-16.8577,0
chr03	22809231	.	A	G	3535.44	PASS	AB=0.447466;ABP=22.4032;AC=19;AF=0.102151;AN=186;AO=364;CIGAR=1X;DP=4565;DPB=4565;DPRA=0.819916;EPP=793.426;EPPR=9121.02;GTI=1;LEN=1;MEANALT=1.09524;MQM=31.0934;MQMR=21.7721;NS=93;NUMALT=1;ODDS=5.26871;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=12714;QR=148408;RO=4199;RPL=364;RPP=793.426;RPPR=9121.02;RPR=0;RUN=1;SAF=364;SAP=793.426;SAR=0;SRF=4199;SRP=9121.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:356:0:0:0,-3.0103,-17.2015	0/0:61:61,0:61:2175:0:0:0,-18.3628,-103.951	0/0:12:12,0:12:420:0:0:0,-3.61236,-21.64	0/0:187:187,0:187:6616:0:0:0,-56.2926,-368.668	0/0:34:34,0:34:1191:0:0:0,-10.235,-67.1179	0/0:37:37,0:37:1293:0:0:0,-11.1381,-62.9951	0/0:104:104,0:104:3665:0:0:0,-31.3071,-204.502	0/0:70:70,0:70:2492:0:0:0,-21.0721,-119.365	0/0:22:22,0:22:767:0:0:0,-6.62266,-37.5467	0/1:50:35,15:35:1230:15:520:-24.7659,0,-55.5451	0/0:18:18,0:18:627:0:0:0,-5.41854,-35.1631	0/0:30:30,0:30:1051:0:0:0,-9.0309,-51.1545	0/0:12:12,0:12:428:0:0:0,-3.61236,-20.6063	0/0:32:32,0:32:1105:0:0:0,-9.63296,-58.4096	0/0:30:30,0:30:1047:0:0:0,-9.0309,-57.5445	0/0:25:24,1:24:852:1:36:0,-5.73247,-42.6455	0/0:17:17,0:17:604:0:0:0,-5.11751,-29.1069	0/0:28:28,0:28:992:0:0:0,-8.42884,-47.896	0/0:9:9,0:9:316:0:0:0,-2.70927,-15.4877	0/0:100:100,0:100:3530:0:0:0,-30.103,-200.499	0/0:81:81,0:81:2863:0:0:0,-24.3834,-155.429	0/0:82:82,0:82:2896:0:0:0,-24.6845,-173.444	0/0:50:50,0:50:1759:0:0:0,-15.0515,-100.683	0/0:58:58,0:58:2052:0:0:0,-17.4597,-110.491	0/0:35:35,0:35:1248:0:0:0,-10.536,-67.7636	0/1:135:98,37:98:3487:37:1272:-55.5367,0,-165.542	0/0:130:130,0:130:4594:0:0:0,-39.1339,-245.252	0/1:16:10,6:10:356:6:207:-11.5493,0,-13.7987	0/0:188:188,0:188:6674:0:0:0,-56.5936,-398.662	0/0:77:77,0:77:2743:0:0:0,-23.1793,-147.625	0/0:82:82,0:82:2882:0:0:0,-24.6845,-162.947	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.08658	0/1:8:4,4:4:144:4:144:-8.89355,0,-5.31212	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-3.5939	0/0:7:7,0:7:231:0:0:0,-2.10721,-12.0215	0/0:109:109,0:109:3843:0:0:0,-32.8123,-226.421	0/0:113:113,0:113:4006:0:0:0,-34.0164,-215.252	0/0:8:8,0:8:280:0:0:0,-2.40824,-13.7853	0/0:2:2,0:2:72:0:0:0,-0.60206,-3.96451	0/1:70:47,23:47:1651:23:820:-42.2436,0,-69.0421	0/1:12:7,5:7:252:5:176:-10.2955,0,-9.02843	0/1:50:32,18:32:1136:18:644:-33.6321,0,-46.6328	0/1:20:9,11:9:324:11:392:-23.6646,0,-11.5276	0/0:30:30,0:30:1068:0:0:0,-9.0309,-56.036	0/0:44:44,0:44:1560:0:0:0,-13.2453,-94.1963	0/0:50:50,0:50:1768:0:0:0,-15.0515,-85.3941	0/0:108:108,0:108:3835:0:0:0,-32.5112,-213.745	0/0:33:33,0:33:1159:0:0:0,-9.93399,-66.365	0/1:52:33,19:33:1143:19:676:-35.3719,0,-49.1132	0/0:92:92,0:92:3250:0:0:0,-27.6948,-196.207	0/0:4:4,0:4:144:0:0:0,-1.20412,-7.98833	0/0:23:23,0:23:811:0:0:0,-6.92369,-39.2717	0/0:33:33,0:33:1167:0:0:0,-9.93399,-70.0559	0/0:7:7,0:7:252:0:0:0,-2.10721,-12.1058	0/1:64:35,29:35:1248:29:1028:-59.414,0,-48.3362	0/1:23:15,7:15:532:7:243:-11.7673,0,-22.2902	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.37353	0/1:5:4,1:4:144:1:32:-1.3411,0,-7.4482	0/0:48:48,0:48:1692:0:0:0,-14.4494,-91.2148	0/0:58:58,0:58:2055:0:0:0,-17.4597,-111.847	0/0:4:4,0:4:140:0:0:0,-1.20412,-7.97027	0/0:188:188,0:188:6652:0:0:0,-56.5936,-398.107	0/0:47:46,1:46:1618:1:36:0,-11.1677,-88.7476	0/0:13:13,0:13:456:0:0:0,-3.91339,-26.4216	0/0:49:49,0:49:1731:0:0:0,-14.7505,-96.5854	0/0:107:107,0:107:3787:0:0:0,-32.2102,-212.313	0/1:77:20,57:20:708:57:2004:-128.269,0,-17.1902	0/0:7:7,0:7:248:0:0:0,-2.10721,-14.2845	0/0:40:40,0:40:1424:0:0:0,-12.0412,-68.239	0/0:36:36,0:36:1272:0:0:0,-10.8371,-73.9747	0/0:22:22,0:22:767:0:0:0,-6.62266,-43.9387	0/0:32:32,0:32:1140:0:0:0,-9.63296,-54.6313	0/0:31:31,0:31:1116:0:0:0,-9.33193,-53.1394	0/0:85:85,0:85:3008:0:0:0,-25.5875,-163.618	0/0:91:91,0:91:3205:0:0:0,-27.3937,-184.868	0/0:24:24,0:24:852:0:0:0,-7.22472,-41.1006	0/0:24:24,0:24:844:0:0:0,-7.22472,-40.9896	0/0:8:8,0:8:288:0:0:0,-2.40824,-13.8081	0/0:57:57,0:57:2010:0:0:0,-17.1587,-109.872	0/0:59:59,0:59:2116:0:0:0,-17.7608,-100.607	0/0:157:157,0:157:5514:0:0:0,-47.2617,-308.374	0/0:62:62,0:62:2203:0:0:0,-18.6639,-117.295	0/1:31:10,21:10:356:21:718:-45.0927,0,-9.7165	0/1:29:21,8:21:735:8:267:-12.3448,0,-32.1758	0/1:56:27,28:27:946:28:967:-56.3292,0,-35.4957	0/0:14:14,0:14:496:0:0:0,-4.21442,-23.9997	0/0:37:37,0:37:1312:0:0:0,-11.1381,-63.1206	0/0:36:36,0:36:1259:0:0:0,-10.8371,-61.3463	0/1:18:5,13:5:167:13:452:-29.9229,0,-3.91224	0/1:63:24,39:24:848:39:1358:-84.3908,0,-25.5425	0/1:30:9,21:9:316:21:722:-45.2462,0,-8.31675	0/0:78:78,0:78:2737:0:0:0,-23.4803,-157.192	0/0:54:54,0:54:1915:0:0:0,-16.2556,-105.238
chr03	22868964	.	C	T	772853	PASS	AB=0.446252;ABP=327.006;AC=157;AF=0.835106;AN=188;AO=29539;CIGAR=1X;DP=36764;DPB=36764;DPRA=0;EPP=64128.8;EPPR=15670.2;GTI=1;LEN=1;MEANALT=1.09574;MQM=53.4837;MQMR=56.4832;NS=94;NUMALT=1;ODDS=2.60311;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1052660;QR=257271;RO=7215;RPL=22831;RPP=19112.6;RPPR=4625.42;RPR=6708;RUN=1;SAF=22829;SAP=19103.1;SAR=6710;SRF=5567;SRP=4625.42;SRR=1648;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:142:85,57:85:3016:57:2031:-140.008,0,-225.323	1/1:282:0,282:0:0:282:10001:-897.268,-84.8905,0	0/1:305:178,127:178:6368:127:4521:-314.494,0,-474.069	1/1:501:1,500:1:36:500:17820:-1597.24,-147.237,0	1/1:161:0,161:0:0:161:5751:-516.279,-48.4658,0	1/1:122:0,122:0:0:122:4347:-389.884,-36.7257,0	1/1:339:0,339:0:0:339:12103:-1086.11,-102.049,0	1/1:271:0,271:0:0:271:9637:-865.042,-81.5791,0	1/1:226:3,223:3:108:223:7943:-702.659,-57.9576,0	0/1:245:123,122:123:4384:122:4319:-314.286,0,-319.196	1/1:657:2,654:2:72:654:23242:-2074.32,-190.93,0	1/1:137:0,137:0:0:137:4875:-437.364,-41.2411,0	0/1:159:89,70:89:3144:70:2477:-174.869,0,-232.254	1/1:149:0,149:0:0:149:5323:-477.98,-44.8535,0	1/1:129:0,129:0:0:129:4571:-410.3,-38.8329,0	1/1:123:1,122:1:36:122:4345:-386.359,-33.4284,0	0/1:134:69,65:69:2465:65:2315:-167.857,0,-180.907	1/1:89:0,89:0:0:89:3184:-286.126,-26.7917,0	0/1:314:161,153:161:5762:153:5455:-393.717,0,-423.753	1/1:530:1,529:1:36:529:18829:-1685.43,-155.948,0	1/1:323:0,323:0:0:323:11500:-1032.21,-97.2327,0	1/1:253:0,253:0:0:253:8990:-807.272,-76.1606,0	1/1:299:1,298:1:36:298:10623:-950.768,-86.4097,0	1/1:182:1,181:1:36:181:6445:-574.833,-51.1892,0	1/1:144:0,144:0:0:144:5154:-463.286,-43.3483,0	0/1:653:348,305:348:12384:305:10863:-778.245,0,-912.861	1/1:537:1,536:1:36:536:19152:-1715.01,-158.055,0	0/1:57:38,19:38:1355:19:672:-43.4695,0,-104.193	1/1:657:0,657:0:0:657:23499:-2108.68,-197.777,0	1/1:278:17,261:17:593:261:9316:-782.369,-30.916,0	1/1:319:0,319:0:0:319:11385:-1021.81,-96.0286,0	0/1:1200:672,528:672:24047:528:18839:-1326.66,0,-1801.67	0/1:982:532,450:532:18993:450:16031:-1141.4,0,-1412.54	1/1:1489:2,1485:2:72:1485:52860:-4725.84,-441.122,0	1/1:1811:4,1806:4:144:1806:64389:-5757.8,-531.821,0	1/1:1019:0,1019:0:0:1019:36366:-3259.47,-306.75,0	1/1:371:1,370:1:36:370:13122:-1173.96,-108.084,0	1/1:197:0,197:0:0:197:7031:-630.608,-59.3029,0	0/1:643:329,314:329:11696:314:11205:-809.544,0,-856.316	1/1:622:3,619:3:108:619:22102:-1971.41,-177.165,0	0/1:326:209,117:209:7446:117:4177:-277.057,0,-565.686	0/1:313:176,137:176:6289:137:4891:-343.047,0,-470.596	0/1:427:261,166:261:9342:166:5886:-400.273,0,-706.105	0/1:151:82,69:82:2932:69:2455:-175.411,0,-218.076	1/1:128:0,128:0:0:128:4592:-411.365,-38.5318,0	1/1:191:0,191:0:0:191:6792:-609.945,-57.4967,0	1/1:220:1,219:1:36:219:7795:-695.689,-62.6283,0	1/1:486:0,486:0:0:486:17292:-1551.44,-146.301,0	1/1:250:1,249:1:36:249:8913:-796.889,-71.6592,0	0/1:384:214,170:214:7630:170:6041:-427.153,0,-568.764	1/1:338:0,338:0:0:338:12034:-1080.23,-101.748,0	1/1:1073:0,1073:0:0:1073:38366:-3435.73,-323.005,0	0/1:260:141,119:141:5060:119:4250:-303.579,0,-372.549	1/1:145:0,145:0:0:145:5164:-463.427,-43.6494,0	0/1:757:451,305:451:16084:305:10846:-744.018,0,-1218.64	0/1:343:219,124:219:7757:124:4433:-294.733,0,-589.695	0/1:175:83,92:83:2965:92:3308:-244.919,0,-213.291	1/1:961:1,959:1:36:959:34172:-3055.08,-285.75,0	0/1:1100:600,499:600:21415:499:17803:-1262.72,0,-1594.71	1/1:156:0,156:0:0:156:5544:-497.975,-46.9607,0	1/1:205:1,204:1:36:204:7300:-651.614,-58.1129,0	1/1:716:0,715:0:0:715:25562:-2288.6,-215.236,0	1/1:172:0,172:0:0:172:6137:-551.063,-51.7772,0	1/1:330:4,326:4:144:326:11622:-1029.76,-86.0554,0	1/1:116:0,116:0:0:116:4115:-368.993,-34.9195,0	1/1:222:0,222:0:0:222:7916:-709.438,-66.8287,0	1/1:335:2,333:2:72:333:11876:-1057.49,-94.0083,0	0/1:230:176,53:176:6232:53:1866:-98.5056,0,-489.187	1/1:576:8,568:8:279:568:20189:-1782.09,-147.946,0	1/1:111:0,111:0:0:111:3967:-355.594,-33.4143,0	1/1:141:0,141:0:0:141:5040:-451.498,-42.4452,0	1/1:975:1,974:1:36:974:34631:-3095.83,-289.906,0	0/1:253:116,136:116:4082:136:4832:-357.983,0,-288.257	1/1:134:0,134:0:0:134:4755:-426.989,-40.338,0	1/1:366:1,365:1:36:365:12981:-1160.23,-106.61,0	1/1:445:3,442:3:108:442:15783:-1406.89,-123.913,0	0/1:280:174,106:174:6166:106:3749:-252.666,0,-465.557	0/1:250:145,105:145:5195:105:3754:-261.748,0,-389.22	1/1:1183:7,1176:7:252:1176:41922:-3734.19,-333.096,0	1/1:269:0,269:0:0:269:9629:-863.98,-80.9771,0	1/1:275:0,275:0:0:275:9790:-878.732,-82.7833,0	1/1:503:0,503:0:0:503:17885:-1604.94,-151.418,0	1/1:144:0,144:0:0:144:5116:-459.025,-43.3483,0	0/1:193:102,91:102:3644:91:3220:-231.525,0,-268.434	0/1:182:104,78:104:3695:78:2787:-195.752,0,-277.364	0/1:284:164,120:164:5834:120:4283:-298.491,0,-437.187	1/1:43:0,43:0:0:43:1540:-138.357,-12.9443,0	1/1:137:0,137:0:0:137:4873:-437.598,-41.2411,0	1/1:98:1,97:1:36:97:3450:-306.268,-25.9027,0	0/1:765:384,381:384:13718:381:13548:-983.872,0,-1002.7	0/1:1240:602,638:602:21464:638:22723:-1663.15,0,-1555.5	0/1:165:119,46:119:4251:46:1609:-95.2591,0,-331.071	1/1:5:0,5:0:0:5:176:-16.1767,-1.50515,0	1/1:186:0,186:0:0:186:6647:-596.391,-55.9916,0
chr03	22876318	.	CTCC	CTCG,GTCG	203344	PASS	AB=0.544229,0.45198;ABP=43.3481,50.5595;AC=158,30;AF=0.840426,0.159574;AN=188;AO=8132,1088;CIGAR=3M1X,1X2M1X;DP=9255;DPB=9255;DPRA=0,1.02578;EPP=17661.4,2365.57;EPPR=7.35324;GTI=2;LEN=1,4;MEANALT=1.76596,2.275;MQM=59.9886,59.9715;MQMR=60;NS=94;NUMALT=2;ODDS=0.0512742;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=289686,37765;QR=72;RO=2;RPL=0,0;RPP=17661.4,2365.57;RPPR=7.35324;RPR=8132,1088;RUN=1,1;SAF=0,0;SAP=17661.4,2365.57;SAR=8132,1088;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:31:0,12,19:0:0:12,19:420,657:-87.9059,-53.7324,-50.1201,-34.5217,0,-28.8021	1/1:150:1,149,0:1:36:149,0:5335,0:-476.684,-41.5562,0,-476.985,-44.8535,-479.923	1/2:104:0,59,43:0:0:59,43:2097,1497:-292.603,-121.718,-103.957,-170.878,0,-157.933	1/1:247:0,246,0:0:0:246,0:8783,0:-790.099,-74.0534,0,-790.099,-74.0534,-790.099	1/1:111:0,110,0:0:0:110,0:3912,0:-351.913,-33.1133,0,-351.913,-33.1133,-351.913	1/1:57:0,56,0:0:0:56,0:2008,0:-180.634,-16.8577,0,-180.634,-16.8577,-180.634	1/1:136:0,136,0:0:0:136,0:4840,0:-435.754,-40.9401,0,-435.754,-40.9401,-435.754	1/1:146:0,145,1:0:0:145,1:5137,27:-462.202,-43.6494,0,-460.077,-41.2547,-459.776	1/1:87:0,86,0:0:0:86,0:3069,0:-276.078,-25.8886,0,-276.078,-25.8886,-276.078	1/2:78:0,27,51:0:0:27,51:964,1789:-224.529,-145.935,-137.807,-78.949,0,-63.5965	1/1:34:0,34,0:0:0:34,0:1216,0:-109.747,-10.235,0,-109.747,-10.235,-109.747	1/1:46:0,46,0:0:0:46,0:1643,0:-148.158,-13.8474,0,-148.158,-13.8474,-148.158	1/2:54:0,31,23:0:0:31,23:1103,817:-156.822,-66.9284,-57.5965,-90.2485,0,-83.3248	1/1:53:0,53,0:0:0:53,0:1896,0:-170.918,-15.9546,0,-170.918,-15.9546,-170.918	1/1:56:0,56,0:0:0:56,0:2000,0:-180.274,-16.8577,0,-180.274,-16.8577,-180.274	1/1:38:0,38,0:0:0:38,0:1349,0:-121.708,-11.4391,0,-121.708,-11.4391,-121.708	1/2:31:0,15,16:0:0:15,16:536,558:-89.4381,-45.7318,-41.2163,-44.0594,0,-39.2429	1/1:37:0,36,1:0:0:36,1:1275,36:-114.693,-10.8371,0,-111.755,-7.53984,-111.454	1/2:21:0,7,14:0:0:7,14:252,470:-58.9757,-38.4057,-36.2985,-20.9217,0,-16.7073	1/1:329:0,328,1:0:0:328,1:11683,36:-1050.98,-98.7378,0,-1048.04,-95.4406,-1047.74	1/1:168:0,166,1:0:0:166,1:5912,36:-531.831,-49.971,0,-528.893,-47.0336,-528.592	1/1:194:0,194,0:0:0:194,0:6943,0:-624.935,-58.3998,0,-624.935,-58.3998,-624.935	1/1:121:0,120,0:0:0:120,0:4275,0:-384.567,-36.1236,0,-384.567,-36.1236,-384.567	1/1:161:0,159,1:0:0:159,1:5686,36:-511.499,-47.8638,0,-508.561,-44.9264,-508.26	1/1:52:0,50,0:0:0:50,0:1762,0:-158.5,-15.0515,0,-158.5,-15.0515,-158.5	1/2:381:0,198,182:0:0:198,182:7046,6295:-1085.76,-511.515,-451.911,-574.239,0,-519.451	1/1:112:0,112,0:0:0:112,0:4019,0:-361.897,-33.7154,0,-361.897,-33.7154,-361.897	1/2:23:0,14,9:0:0:14,9:500,312:-66.477,-25.7058,-21.4914,-41.1218,0,-38.4125	1/1:310:0,308,2:0:0:308,2:11007,65:-990.199,-92.7172,0,-984.953,-87.1463,-984.351	1/1:168:0,163,4:0:0:163,4:5820,139:-523.562,-49.0679,0,-512.262,-37.7771,-511.058	1/1:156:0,155,0:0:0:155,0:5536,0:-497.997,-46.6597,0,-497.997,-46.6597,-497.997	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:5:0,4,1:0:0:4,1:135,35:-14.1286,-3.1976,-1.99348,-11.2784,0,-10.9774	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:145:0,145,0:0:0:145,0:5151,0:-463.733,-43.6494,0,-463.733,-43.6494,-463.733	1/1:257:0,257,0:0:0:257,0:9152,0:-823.655,-77.3647,0,-823.655,-77.3647,-823.655	1/2:34:0,23,11:0:0:23,11:824,381:-98.5205,-31.3109,-24.3872,-67.5596,0,-64.2483	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:150:0,90,60:0:0:90,60:3199,2091:-431.086,-170.397,-143.304,-261.04,0,-242.978	1/2:9:0,5,4:0:0:5,4:180,133:-25.7965,-11.0941,-9.58899,-15.0469,0,-13.8428	1/2:164:0,95,69:0:0:95,69:3365,2387:-468.435,-194.316,-165.718,-274.468,0,-253.697	1/2:32:0,21,11:0:0:21,11:747,390:-93.0054,-32.1276,-25.8059,-61.2327,0,-57.9213	1/1:51:0,50,0:0:0:50,0:1774,0:-159.65,-15.0515,0,-159.65,-15.0515,-159.65	1/1:108:0,108,0:0:0:108,0:3842,0:-345.975,-32.5112,0,-345.975,-32.5112,-345.975	1/1:97:0,97,0:0:0:97,0:3441,0:-309.901,-29.1999,0,-309.901,-29.1999,-309.901	1/1:172:0,171,0:0:0:171,0:6049,0:-544.153,-51.4761,0,-544.153,-51.4761,-544.153	1/1:78:1,77,0:1:36:77,0:2738,0:-243.063,-19.8821,0,-243.365,-23.1793,-246.302	1/2:140:0,80,60:0:0:80,60:2857,2107:-404.767,-171.837,-147.755,-233.284,0,-215.222	1/1:265:0,264,0:0:0:264,0:9422,0:-847.578,-79.4719,0,-847.578,-79.4719,-847.578	1/1:8:0,7,1:0:0:7,1:239,24:-21.5901,-2.10721,0,-19.7439,-0.00834865,-19.4428	1/2:207:0,117,90:0:0:117,90:4166,3147:-595.756,-256.366,-221.145,-339.743,0,-312.65	1/1:21:0,20,1:0:0:20,1:720,25:-64.8736,-6.0206,0,-62.9299,-3.82177,-62.6289	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:109:0,69,40:0:0:69,40:2437,1393:-312.087,-113.625,-92.8537,-198.812,0,-186.771	1/2:61:0,35,26:0:0:35,26:1244,899:-174.773,-73.3944,-62.8583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chr03	22876374	.	CA	AA	22026.3	PASS	AB=0.478986;ABP=14.0532;AC=31;AF=0.164894;AN=188;AO=1394;CIGAR=1X1M;DP=9631;DPB=9631;DPRA=1.07798;EPP=3030.04;EPPR=17852.5;GTI=2;LEN=1;MEANALT=1.075;MQM=59.9813;MQMR=59.9917;NS=94;NUMALT=1;ODDS=0.367677;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48965;QR=285449;RO=8220;RPL=0;RPP=3030.04;RPPR=17852.5;RPR=1394;RUN=1;SAF=1394;SAP=3030.04;SAR=0;SRF=8220;SRP=17852.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:30,23:30:1070:23:809:-57.1737,0,-80.6572	0/0:82:81,1:81:2803:1:23:0,-22.3845,-250.208	0/1:240:115,125:115:4026:125:4374:-321.586,0,-290.283	0/0:313:313,0:313:10897:0:0:0,-94.2224,-980.655	0/0:119:117,2:117:4073:2:68:0,-29.365,-360.299	0/0:20:20,0:20:702:0:0:0,-6.0206,-63.503	0/0:98:97,0:97:3396:0:0:0,-29.1999,-305.645	0/0:188:186,2:186:6511:2:57:0,-51.1803,-580.67	0/0:121:121,0:121:4197:0:0:0,-36.4246,-377.915	0/1:96:50,46:50:1697:46:1598:-115.206,0,-124.107	0/0:38:38,0:38:1334:0:0:0,-11.4391,-120.359	0/0:101:100,0:100:3513:0:0:0,-30.103,-316.061	0/1:86:55,31:55:1860:31:1096:-73.0614,0,-141.783	0/0:63:62,0:62:2122:0:0:0,-18.6639,-190.882	0/0:84:84,0:84:2886:0:0:0,-25.2865,-259.975	0/0:69:69,0:69:2338:0:0:0,-20.7711,-210.674	0/1:34:18,16:18:604:16:568:-41.2168,0,-44.4399	0/0:37:37,0:37:1216:0:0:0,-11.1381,-109.727	0/1:19:8,11:8:269:11:392:-29.9005,0,-18.8179	0/0:284:284,0:284:9755:0:0:0,-85.4925,-877.928	0/0:153:153,0:153:5320:0:0:0,-46.0576,-478.94	0/0:67:65,0:65:2271:0:0:0,-19.5669,-204.292	0/0:123:122,1:122:4292:1:36:0,-33.4284,-382.863	0/0:75:75,0:75:2659:0:0:0,-22.5772,-239.556	0/0:80:80,0:80:2776:0:0:0,-24.0824,-250.079	0/1:252:138,114:138:4827:114:3992:-283.609,0,-358.731	0/0:241:240,1:240:8364:1:36:0,-68.95,-749.183	0/1:33:17,16:17:590:16:564:-41.1563,0,-43.4905	0/0:299:297,0:297:10367:0:0:0,-89.4059,-932.614	0/0:115:110,5:110:3850:5:180:0,-18.0664,-330.148	0/0:87:87,0:87:3043:0:0:0,-26.1896,-274.099	0/1:6:5,1:5:170:1:36:-1.79209,0,-13.8278	0/1:19:11,8:11:386:8:288:-20.5478,0,-29.356	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3581	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:152:152,0:152:5329:0:0:0,-45.7566,-479.749	0/0:104:104,0:104:3631:0:0:0,-31.3071,-326.998	0/1:33:11,19:11:396:19:650:-49.4281,0,-26.592	0/0:8:8,0:8:286:0:0:0,-2.40824,-26.0855	0/1:195:112,83:112:3919:83:2926:-204.87,0,-294.204	0/1:32:20,12:20:694:12:417:-28.2273,0,-53.1468	0/1:244:120,124:120:4167:124:4373:-320.29,0,-301.765	0/1:69:31,38:31:1071:38:1360:-101.916,0,-75.9229	0/0:72:72,0:72:2435:0:0:0,-21.6742,-219.399	0/0:103:103,0:103:3548:0:0:0,-31.0061,-318.903	0/0:149:148,0:148:5126:0:0:0,-44.5524,-461.13	0/0:216:215,1:215:7492:1:36:0,-61.4242,-670.738	0/0:123:123,0:123:4222:0:0:0,-37.0267,-380.168	0/1:181:114,67:114:3962:67:2384:-160.33,0,-302.29	0/0:97:97,0:97:3370:0:0:0,-29.1999,-303.517	0/0:13:13,0:13:458:0:0:0,-3.91339,-41.5538	0/1:149:72,77:72:2486:77:2710:-199.287,0,-179.137	0/0:53:53,0:53:1842:0:0:0,-15.9546,-166.056	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:184:95,88:95:3303:88:3012:-215.858,0,-242.043	0/1:41:16,25:16:561:25:858:-65.1865,0,-38.476	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:10:5,5:5:178:5:176:-13.1747,0,-13.3583	0/0:98:97,0:97:3367:0:0:0,-29.1999,-302.886	0/0:145:144,1:144:4920:1:36:0,-40.0511,-439.359	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:188:188,0:188:6484:0:0:0,-56.5936,-583.66	0/0:189:189,0:189:6636:0:0:0,-56.8947,-597.325	0/0:85:85,0:85:2921:0:0:0,-25.5875,-263.124	0/0:144:144,0:144:5037:0:0:0,-43.3483,-453.483	0/0:168:167,1:167:5817:1:36:0,-46.9748,-520.035	0/1:140:43,97:43:1500:97:3443:-267.935,0,-93.1441	0/0:61:61,0:61:2120:0:0:0,-18.3628,-191.065	0/0:61:61,0:61:2144:0:0:0,-18.3628,-193.225	0/0:40:40,0:40:1387:0:0:0,-12.0412,-125.124	0/0:23:23,0:23:787:0:0:0,-6.92369,-71.1434	0/1:85:47,38:47:1626:38:1322:-93.6879,0,-121.036	0/0:111:111,0:111:3817:0:0:0,-33.4143,-343.733	0/0:120:119,0:119:4131:0:0:0,-35.8226,-371.618	0/0:225:223,0:223:7820:0:0:0,-67.1297,-703.481	0/1:142:71,71:71:2381:71:2494:-181.964,0,-171.795	0/1:94:51,43:51:1738:43:1514:-108.252,0,-128.401	0/0:8:8,0:8:274:0:0:0,-2.40824,-24.993	0/0:144:144,0:144:5004:0:0:0,-43.3483,-450.516	0/0:163:163,0:163:5574:0:0:0,-49.0679,-501.798	0/0:213:213,0:213:7404:0:0:0,-64.1194,-666.332	0/0:57:57,0:57:2006:0:0:0,-17.1587,-180.811	0/1:69:38,31:38:1347:31:1081:-76.8255,0,-100.759	0/1:58:34,24:34:1187:24:864:-60.6228,0,-89.6719	0/1:130:75,54:75:2647:54:1896:-131.724,0,-199.282	0/0:25:25,0:25:886:0:0:0,-7.52575,-80.0584	0/0:91:91,0:91:3129:0:0:0,-27.3937,-281.835	0/0:82:82,0:82:2826:0:0:0,-24.6845,-254.575	0/1:35:24,11:24:834:11:392:-25.084,0,-64.8392	0/1:69:41,28:41:1438:28:1004:-69.9048,0,-108.942	0/1:75:24,51:24:825:51:1792:-138.937,0,-51.9849	0/0:204:204,0:204:7051:0:0:0,-61.4101,-634.667	0/0:120:120,0:120:4157:0:0:0,-36.1236,-374.315
chr03	22878786	.	T	C	162563	PASS	AB=0.522124;ABP=12.6186;AC=153;AF=0.831522;AN=184;AO=7348;CIGAR=1X;DP=8438;DPB=8438;DPRA=0;EPP=15959;EPPR=2350.38;GTI=1;LEN=1;MEANALT=1.05435;MQM=59.92;MQMR=59.965;NS=92;NUMALT=1;ODDS=5.14248;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262721;QR=38905;RO=1085;RPL=0;RPP=15959;RPPR=2350.38;RPR=7348;RUN=1;SAF=7348;SAP=15959;SAR=0;SRF=1085;SRP=2359.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:10,28:10:356:28:1008:-79.5972,0,-20.9421	1/1:102:0,102:0:0:102:3646:-328.344,-30.7051,0	0/1:90:37,53:37:1320:53:1891:-143.375,0,-92.0092	1/1:216:0,216:0:0:216:7756:-698.068,-65.0225,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:48:0,48:0:0:48:1712:-154.365,-14.4494,0	1/1:177:0,177:0:0:177:6309:-567.901,-53.2823,0	1/1:115:0,115:0:0:115:4105:-369.634,-34.6185,0	1/1:85:2,83:2:72:83:2952:-259.076,-18.7508,0	0/1:143:74,69:74:2656:69:2458:-178.426,0,-196.238	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:76:1,75:1:36:75:2685:-238.293,-19.28,0	0/1:58:27,31:27:972:31:1112:-82.9316,0,-70.3382	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:78:0,78:0:0:78:2786:-250.98,-23.4803,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:42:19,22:19:680:22:788:-58.678,0,-48.9696	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:41:21,20:21:756:20:712:-52.0644,0,-56.025	1/1:220:0,220:0:0:220:7908:-711.665,-66.2266,0	1/1:140:0,140:0:0:140:5000:-450.149,-42.1442,0	1/1:102:0,102:0:0:102:3643:-328.075,-30.7051,0	1/1:93:0,93:0:0:93:3328:-299.738,-27.9958,0	1/1:120:0,120:0:0:120:4290:-386.277,-36.1236,0	1/1:51:0,51:0:0:51:1796:-161.729,-15.3525,0	0/1:283:127,155:127:4552:155:5555:-414.813,0,-324.595	1/1:185:0,185:0:0:185:6593:-593.449,-55.6906,0	0/1:40:17,23:17:612:23:828:-62.8029,0,-43.3722	1/1:259:0,259:0:0:259:9244:-831.917,-77.9668,0	1/1:98:1,97:1:36:97:3472:-308.963,-25.9027,0	1/1:172:0,172:0:0:172:6140:-552.679,-51.7772,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.333	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:209:0,209:0:0:209:7487:-673.856,-62.9153,0	1/1:164:0,164:0:0:164:5879:-529.205,-49.3689,0	0/1:66:35,30:35:1260:30:1076:-77.2261,0,-93.7787	.:.:.:.:.:.:.:.	0/1:97:39,58:39:1400:58:2057:-156.201,0,-97.0544	0/1:37:16,21:16:576:21:756:-57.2291,0,-41.0369	0/1:87:47,39:47:1688:39:1384:-98.7228,0,-126.076	0/1:76:41,35:41:1476:35:1256:-90.467,0,-110.257	1/1:59:0,59:0:0:59:2109:-190.079,-17.7608,0	1/1:84:0,84:0:0:84:3018:-271.85,-25.2865,0	1/1:137:0,137:0:0:137:4895:-440.673,-41.2411,0	1/1:120:0,120:0:0:120:4284:-385.731,-36.1236,0	1/1:145:0,145:0:0:145:5200:-468.132,-43.6494,0	0/1:114:45,69:45:1612:69:2476:-188.776,0,-111.053	1/1:225:0,225:0:0:225:8048:-724.314,-67.7318,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:118:45,73:45:1616:73:2616:-200.166,0,-110.208	1/1:37:0,37:0:0:37:1315:-118.648,-11.1381,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:111:46,65:46:1652:65:2314:-175.105,0,-115.554	0/1:35:17,18:17:612:18:648:-48.1158,0,-44.8774	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:19:6,13:6:216:13:455:-35.5529,0,-14.0709	1/1:76:0,76:0:0:76:2715:-244.593,-22.8783,0	1/1:127:2,125:2:72:125:4484:-396.891,-31.3941,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:215:0,215:0:0:215:7711:-693.862,-64.7215,0	1/1:146:0,146:0:0:146:5221:-470.029,-43.9504,0	1/1:77:0,77:0:0:77:2760:-248.57,-23.1793,0	1/1:66:0,66:0:0:66:2363:-212.15,-19.868,0	1/1:155:0,155:0:0:155:5560:-500.51,-46.6597,0	0/1:93:52,41:52:1851:41:1472:-104.78,0,-138.873	1/1:14:0,14:0:0:14:486:-44.068,-4.21442,0	1/1:75:0,75:0:0:75:2644:-238.206,-22.5773,0	1/1:67:0,67:0:0:67:2376:-214.096,-20.169,0	1/1:33:0,33:0:0:33:1184:-105.929,-9.93399,0	0/1:127:77,50:77:2749:50:1796:-123.692,0,-209.412	1/1:83:0,83:0:0:83:2969:-267.434,-24.9855,0	1/1:138:0,138:0:0:138:4925:-443.392,-41.5421,0	1/1:153:1,152:1:36:152:5445:-486.579,-42.4593,0	0/1:27:8,19:8:288:19:680:-53.4014,0,-18.1396	0/1:99:57,42:57:2052:42:1504:-105.849,0,-155.149	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:105:0,105:0:0:105:3761:-338.687,-31.6082,0	1/1:89:0,89:0:0:89:3160:-284.615,-26.7917,0	1/1:238:0,237:0:0:237:8467:-761.477,-71.3441,0	1/1:106:0,106:0:0:106:3782:-340.578,-31.9092,0	0/1:49:25,24:25:881:24:864:-63.3321,0,-64.853	0/1:82:33,49:33:1180:49:1747:-132.699,0,-81.8236	0/1:97:52,45:52:1872:45:1612:-116.168,0,-139.559	1/1:47:0,47:0:0:47:1683:-151.756,-14.1484,0	1/1:66:0,66:0:0:66:2355:-212.208,-19.868,0	1/1:72:0,72:0:0:72:2584:-232.807,-21.6742,0	0/1:34:22,12:22:788:12:432:-28.9862,0,-61.0098	0/1:61:27,34:27:972:34:1213:-91.1124,0,-69.4351	0/1:66:44,22:44:1576:22:792:-51.7315,0,-122.264	1/1:141:2,139:2:72:139:4951:-438.905,-35.6095,0	1/1:109:0,109:0:0:109:3869:-348.368,-32.8123,0
chr03	22878810	.	T	C	17712.3	PASS	AB=0.482835;ABP=8.75023;AC=31;AF=0.168478;AN=184;AO=1094;CIGAR=1X;DP=8330;DPB=8330;DPRA=0.902363;EPP=2352.61;EPPR=15678.9;GTI=1;LEN=1;MEANALT=1.02564;MQM=59.9616;MQMR=59.9392;NS=92;NUMALT=1;ODDS=3.49874;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38871;QR=258361;RO=7235;RPL=1091;RPP=2352.61;RPPR=15678.9;RPR=3;RUN=1;SAF=1094;SAP=2378.6;SAR=0;SRF=7235;SRP=15713.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:28,10:28:991:10:345:-19.9417,0,-78.0644	0/0:99:99,0:99:3536:0:0:0,-29.802,-318.447	0/1:89:52,37:52:1851:37:1328:-93.0306,0,-140.078	0/0:211:210,1:210:7497:1:36:0,-59.9191,-671.172	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.085	0/0:172:171,1:171:6109:1:36:0,-48.1789,-546.31	0/0:116:116,0:116:4101:0:0:0,-34.9195,-368.499	0/0:83:81,2:81:2890:2:72:0,-18.1488,-253.499	0/1:143:67,76:67:2412:76:2717:-201.724,0,-174.289	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.4	0/1:59:31,28:31:1092:28:995:-72.1032,0,-80.8261	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:41:22,19:22:788:19:671:-48.3736,0,-58.8944	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:42:20,22:20:699:22:765:-56.5245,0,-50.5892	0/0:214:214,0:214:7615:0:0:0,-64.4204,-685.382	0/0:139:139,0:139:4960:0:0:0,-41.8432,-446.548	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/0:92:92,0:92:3287:0:0:0,-27.6948,-296.049	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/0:50:50,0:50:1788:0:0:0,-15.0515,-160.425	0/1:277:153,123:153:5480:123:4389:-311.737,0,-409.88	0/0:180:180,0:180:6437:0:0:0,-54.1854,-579.416	0/1:39:22,17:22:784:17:608:-43.3119,0,-59.1437	0/0:253:253,0:253:9045:0:0:0,-76.1606,-814.027	0/0:94:93,1:93:3328:1:36:0,-24.6985,-296.139	0/0:171:169,2:169:6041:2:63:0,-45.4938,-537.681	0/1:6:2,4:2:72:4:132:-10.3997,0,-5.03054	0/1:13:8,5:8:288:5:180:-12.634,0,-22.354	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:206:206,0:206:7371:0:0:0,-62.0122,-663.425	0/0:163:163,0:163:5828:0:0:0,-49.0679,-524.626	0/1:67:31,36:31:1108:36:1288:-96.0546,0,-79.862	.:.:.:.:.:.:.:.	0/1:95:57,38:57:2024:38:1342:-92.4807,0,-153.832	0/1:37:21,16:21:756:16:546:-38.3212,0,-57.2291	0/1:87:38,49:38:1327:49:1742:-130.869,0,-93.5319	0/1:74:33,41:33:1175:41:1472:-110.499,0,-83.7807	0/0:55:55,0:55:1942:0:0:0,-16.5566,-175.055	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.752	0/0:120:120,0:120:4290:0:0:0,-36.1236,-386.27	0/0:142:142,0:142:5083:0:0:0,-42.7463,-457.607	0/1:114:68,46:68:2423:46:1643:-113.84,0,-184.008	0/0:223:223,0:223:7961:0:0:0,-67.1297,-716.511	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:117:73,44:73:2628:44:1546:-104.208,0,-201.546	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:107:63,44:63:2255:44:1548:-107.398,0,-171.002	0/1:36:18,18:18:639:18:629:-46.0967,0,-47.0012	0/1:10:9,1:9:316:1:36:-0.587975,0,-25.7686	0/1:18:12,6:12:419:6:216:-14.372,0,-32.6149	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.953	0/0:124:122,2:122:4343:2:72:0,-30.491,-384.207	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:213:213,0:213:7611:0:0:0,-64.1194,-685.026	0/0:145:145,0:145:5165:0:0:0,-43.6493,-464.989	0/0:75:75,0:75:2667:0:0:0,-22.5772,-240.262	0/0:65:65,0:65:2301:0:0:0,-19.5669,-206.246	0/0:154:154,0:154:5494:0:0:0,-46.3586,-494.579	0/1:93:42,51:42:1508:51:1828:-136.805,0,-108.019	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:75:75,0:75:2659:0:0:0,-22.5772,-239.553	0/0:65:65,0:65:2313:0:0:0,-19.5669,-208.429	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:126:49,77:49:1764:77:2718:-206.929,0,-121.114	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.83	0/0:134:134,0:134:4775:0:0:0,-40.338,-429.904	0/0:153:152,1:152:5459:1:36:0,-42.4593,-487.837	0/1:26:17,9:17:599:9:320:-21.3156,0,-46.4113	0/1:99:42,57:42:1490:57:2040:-154.07,0,-104.588	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:105:105,0:105:3754:0:0:0,-31.6081,-338.059	0/0:88:88,0:88:3137:0:0:0,-26.4906,-282.357	0/0:238:238,0:238:8494:0:0:0,-71.6451,-763.601	0/0:107:107,0:107:3815:0:0:0,-32.2102,-343.548	0/1:49:24,25:24:864:25:882:-64.9458,0,-63.3321	0/1:81:48,33:48:1697:33:1188:-82.8452,0,-128.626	0/1:97:43,54:43:1520:54:1931:-144.866,0,-107.89	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.58	0/0:73:72,1:72:2562:1:36:0,-18.3769,-227.23	0/1:34:12,22:12:432:22:777:-60.0153,0,-28.9862	0/1:63:33,30:33:1171:30:1067:-77.3763,0,-86.7318	0/1:66:21,45:21:752:45:1595:-123.972,0,-48.1358	0/0:142:142,0:142:5062:0:0:0,-42.7463,-455.723	0/0:107:107,0:107:3832:0:0:0,-32.2102,-344.649
chr03	22897925	.	T	A	7060	PASS	AB=0.465681;ABP=12.6982;AC=31;AF=0.164894;AN=188;AO=446;CIGAR=1X;DP=3345;DPB=3345;DPRA=0.831847;EPP=971.487;EPPR=6263.41;GTI=4;LEN=1;MEANALT=1;MQM=60;MQMR=59.9966;NS=94;NUMALT=1;ODDS=0.9137;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15937;QR=103500;RO=2899;RPL=444;RPP=954.193;RPPR=6237.45;RPR=2;RUN=1;SAF=2;SAP=954.193;SAR=444;SRF=3;SRP=6272.08;SRR=2896;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/1:29:17,12:17:612:12:428:-30.1289,0,-46.6754	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:38:15,23:15:532:23:828:-63.405,0,-36.7739	0/0:24:23,1:23:824:1:36:0,-3.62644,-70.885	0/0:33:32,1:32:1144:1:36:0,-6.33571,-99.6712	0/1:23:9,14:9:305:14:504:-38.7744,0,-20.8535	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:35:17,18:17:612:18:644:-47.7545,0,-44.8774	0/0:22:21,1:21:756:1:36:0,-3.02438,-64.7689	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/0:57:57,0:57:2006:0:0:0,-17.1587,-180.81	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/1:98:60,38:60:2126:38:1349:-92.2094,0,-162.104	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.346	0/1:70:62,8:62:2201:8:284:-4.83125,0,-177.282	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:50:49,1:49:1749:1:36:0,-11.4532,-154.094	0/1:36:19,17:19:684:17:608:-44.2149,0,-51.0532	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:67:31,36:31:1097:36:1292:-96.4148,0,-78.869	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/1:28:12,16:12:428:16:576:-43.7461,0,-30.43	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:39:19,20:19:680:20:697:-51.3105,0,-49.789	0/0:77:77,0:77:2753:0:0:0,-23.1793,-248.01	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:30:21,9:21:756:9:320:-20.1115,0,-59.3363	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:33:21,12:21:752:12:432:-29.2872,0,-58.0723	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/0:63:62,1:62:2217:1:36:0,-15.3666,-196.194	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:75:75,0:75:2647:0:0:0,-22.5772,-238.473	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:42:20,22:20:701:22:784:-58.2407,0,-50.7685	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:46:26,20:26:932:20:716:-50.9203,0,-70.3515	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:112:112,0:112:4005:0:0:0,-33.7154,-360.638	0/0:53:53,0:53:1877:0:0:0,-15.9546,-169.207	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:22:22,0:22:739:0:0:0,-6.62266,-66.818	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.824	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:23:9,14:9:320:14:500:-38.4125,0,-22.2187	0/1:22:7,15:7:252:15:536:-41.9522,0,-16.4063	0/1:60:19,41:19:680:41:1459:-113.543,0,-43.4674	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8171	0/0:36:36,0:36:1269:0:0:0,-10.8371,-114.511	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:17:6,11:6:212:11:392:-30.5025,0,-14.3073	0/1:38:21,17:21:756:17:612:-43.9743,0,-56.9281	0/1:31:11,20:11:396:20:716:-55.4358,0,-26.6508	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.759	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752
chr03	23002462	.	GGGAGG	GGGAAA,GGGAGA	200340	PASS	AB=0.474899,0.512642;ABP=17.9448,6.79864;AC=157,31;AF=0.835106,0.164894;AN=188;AO=7933,1417;CIGAR=4M2X,5M1X;DP=9449;DPB=9481.33;DPRA=0,1.12317;EPP=17229.3,3079.99;EPPR=5.18177;GTI=0;LEN=2,1;MEANALT=2.35106,2.92683;MQM=59.9824,60;MQMR=60;NS=94;NUMALT=2;ODDS=16.6474;PAIRED=0,0;PAIREDR=0;PAO=17.3333,17.3333;PQA=559.667,559.667;PQR=559.667;PRO=17.3333;QA=275442,50435;QR=27;RO=1;RPL=7924,1417;RPP=17151.2,3079.99;RPPR=5.18177;RPR=9,0;RUN=1,1;SAF=7924,1417;SAP=17151.2,3079.99;SAR=9,0;SRF=1;SRP=5.18177;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:75:0,30,45:0:0:30,45:1033,1600:-214.639,-130.744,-121.713,-84.2442,0,-70.6979	1/1:94:0,94,0:0:0:94,0:3272,0:-294.699,-28.2968,0,-294.699,-28.2968,-294.699	1/2:167:0,74,89:0:0:74,89:2571,3169:-467.33,-258.318,-236.042,-209.039,0,-182.247	1/1:161:0,160,0:0:0:160,0:5572,0:-501.258,-48.1648,0,-501.258,-48.1648,-501.258	1/1:80:0,75,0:0:0:75,0:2586,0:-232.644,-22.5773,0,-232.644,-22.5773,-232.644	1/1:49:0,49,0:0:0:49,0:1733,0:-156.253,-14.7505,0,-156.253,-14.7505,-156.253	1/1:90:0,89,0:0:0:89,0:3074,0:-276.569,-26.7917,0,-276.569,-26.7917,-276.569	1/1:154:0,152,0:0:0:152,0:5307,0:-477.465,-45.7566,0,-477.465,-45.7566,-477.465	1/1:141:0,139,0:0:0:139,0:4824,0:-434.007,-41.8432,0,-434.007,-41.8432,-434.007	1/2:75:0,38,33:0:0:38,33:1315,1176:-202.732,-95.8766,-84.4375,-106.869,0,-96.9353	1/1:39:0,37,1:0:0:37,1:1229,36:-110.542,-11.1381,0,-107.604,-8.20069,-107.303	1/1:96:0,96,0:0:0:96,0:3313,0:-298.337,-28.8989,0,-298.337,-28.8989,-298.337	1/2:73:0,38,34:0:0:38,34:1270,1212:-201.675,-98.8691,-87.43,-102.869,0,-92.6338	1/1:64:0,63,1:0:0:63,1:2174,36:-195.564,-18.9649,0,-192.626,-15.6676,-192.325	1/1:42:0,42,0:0:0:42,0:1432,0:-129.168,-12.6433,0,-129.168,-12.6433,-129.168	1/1:49:0,48,0:0:0:48,0:1686,0:-151.666,-14.4494,0,-151.666,-14.4494,-151.666	1/2:21:0,8,13:0:0:8,13:262,464:-59.3357,-38.1841,-35.7759,-21.4902,0,-17.5768	1/1:25:0,25,0:0:0:25,0:861,0:-77.8014,-7.52575,0,-77.8014,-7.52575,-77.8014	1/2:29:0,15,14:0:0:15,14:520,504:-83.3692,-41.1118,-36.5963,-42.2399,0,-38.0255	1/1:152:0,150,0:0:0:150,0:5262,0:-473.353,-45.1545,0,-473.353,-45.1545,-473.353	1/1:236:0,232,0:0:0:232,0:8021,0:-721.601,-69.839,0,-721.601,-69.839,-721.601	1/1:147:0,147,0:0:0:147,0:5119,0:-460.394,-44.2514,0,-460.394,-44.2514,-460.394	1/1:128:0,127,0:0:0:127,0:4428,0:-398.285,-38.2308,0,-398.285,-38.2308,-398.285	1/1:100:0,99,0:0:0:99,0:3373,0:-303.452,-29.802,0,-303.452,-29.802,-303.452	1/1:94:0,94,0:0:0:94,0:3311,0:-298.209,-28.2968,0,-298.209,-28.2968,-298.209	1/2:274:1,169,102:1:27:169,102:5884,3629:-771.793,-293.643,-244.897,-476.336,0,-447.76	1/1:162:0,161,0:0:0:161,0:5594,0:-503.121,-48.4658,0,-503.121,-48.4658,-503.121	1/2:20:0,6,14:0:0:6,14:216,496:-58.3861,-40.7598,-38.9537,-17.9843,0,-13.7699	1/1:228:0,225,1:0:0:225,1:7810,36:-702.616,-67.7318,0,-699.678,-64.7794,-699.377	1/1:157:0,148,7:0:0:148,7:5103,252:-459.071,-44.5524,0,-438.509,-23.9645,-436.401	1/1:98:0,97,0:0:0:97,0:3337,0:-300.189,-29.1999,0,-300.189,-29.1999,-300.189	1/2:27:0,17,10:0:0:17,10:595,356:-77.7762,-29.3709,-24.2534,-48.7589,0,-45.7486	1/2:55:0,29,26:0:0:29,26:1003,932:-157.866,-76.3721,-67.6422,-81.8467,0,-74.0199	1/1:28:0,26,0:0:0:26,0:882,0:-79.356,-7.82678,0,-79.356,-7.82678,-79.356	1/1:28:0,28,0:0:0:28,0:977,0:-88.2405,-8.42884,0,-88.2405,-8.42884,-88.2405	1/1:64:0,64,0:0:0:64,0:2197,0:-197.99,-19.2659,0,-197.99,-19.2659,-197.99	1/1:167:0,165,1:0:0:165,1:5661,36:-509.263,-49.67,0,-506.325,-46.7325,-506.024	1/1:204:0,199,3:0:0:199,3:6956,94:-624.43,-59.905,0,-616.877,-52.3681,-615.974	1/2:31:0,14,17:0:0:14,17:482,612:-89.4355,-50.2959,-46.0815,-39.4908,0,-34.3733	1/1:11:0,11,0:0:0:11,0:378,0:-34.3495,-3.31133,0,-34.3495,-3.31133,-34.3495	1/2:110:0,52,58:0:0:52,58:1835,2061:-317.721,-168.3,-152.646,-149.775,0,-132.316	1/2:36:0,18,18:0:0:18,18:616,639:-102.412,-52.4197,-47.0012,-50.3403,0,-44.9218	1/2:199:0,84,109:0:0:84,109:2875,3877:-549.303,-315.953,-290.666,-233.339,0,-200.527	1/2:45:0,23,21:0:0:23,21:795,748:-125.61,-61.0184,-54.0948,-64.6368,0,-58.3152	1/1:51:0,51,0:0:0:51,0:1737,0:-156.556,-15.3525,0,-156.556,-15.3525,-156.556	1/1:156:0,156,0:0:0:156,0:5441,0:-489.772,-46.9607,0,-489.772,-46.9607,-489.772	1/1:118:0,117,0:0:0:117,0:4047,0:-364.061,-35.2205,0,-364.061,-35.2205,-364.061	1/1:254:0,252,1:0:0:252,1:8699,36:-782.539,-75.8596,0,-779.602,-72.9086,-779.301	1/1:107:0,107,0:0:0:107,0:3719,0:-334.912,-32.2102,0,-334.912,-32.2102,-334.912	1/2:132:0,67,64:0:0:67,64:2336,2279:-375.716,-185.742,-165.573,-189.964,0,-170.698	1/1:171:0,170,0:0:0:170,0:5938,0:-534.207,-51.1751,0,-534.207,-51.1751,-534.207	1/1:15:0,14,0:0:0:14,0:493,0:-44.4915,-4.21442,0,-44.4915,-4.21442,-44.4915	1/2:122:0,58,64:0:0:58,64:2050,2264:-351.607,-184.65,-167.191,-167.207,0,-147.941	1/1:70:0,69,0:0:0:69,0:2368,0:-213.015,-20.7711,0,-213.015,-20.7711,-213.015	1/2:36:0,12,24:0:0:12,24:406,829:-100.61,-67.6995,-64.0871,-33.251,0,-26.0263	1/2:156:0,80,75:0:0:80,75:2768,2658:-441.403,-216.477,-192.395,-224.865,0,-2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chr03	23040438	.	C	T	112164	PASS	AB=0.484139;ABP=7.48784;AC=157;AF=0.835106;AN=188;AO=5115;CIGAR=1X;DP=6184;DPB=6184;DPRA=0;EPP=11092.7;EPPR=2322.14;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9848;MQMR=59.9925;NS=94;NUMALT=1;ODDS=1.38957;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183342;QR=38190;RO=1068;RPL=2;RPP=11092.7;RPPR=2313.47;RPR=5113;RUN=1;SAF=0;SAP=11110.1;SAR=5115;SRF=1;SRP=2313.47;SRR=1067;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.2574	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	0/1:110:46,64:46:1644:64:2300:-174.147,0,-115.135	1/1:106:0,106:0:0:106:3784:-340.757,-31.9092,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:35:0,34:0:0:34:1216:-109.387,-10.235,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:98:0,98:0:0:98:3500:-315.21,-29.5009,0	1/1:80:0,80:0:0:80:2868:-258.349,-24.0824,0	0/1:41:20,21:20:720:21:756:-56.025,0,-52.7865	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0	1/1:72:0,72:0:0:72:2584:-232.808,-21.6742,0	0/1:62:34,28:34:1212:28:1008:-72.3725,0,-90.7225	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:36:0,36:0:0:36:1268:-114.422,-10.8371,0	1/1:46:1,45:1:36:45:1616:-142.132,-10.2491,0	0/1:32:22,10:22:788:10:360:-23.1113,0,-61.6118	1/1:25:1,24:1:36:24:864:-74.4843,-3.92748,0	0/1:30:17,13:17:608:13:468:-33.4287,0,-46.0211	1/1:84:0,84:0:0:84:3024:-272.389,-25.2865,0	1/1:83:0,83:0:0:83:2967:-267.263,-24.9855,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:31:1,30:1:36:30:1076:-93.5546,-5.73366,0	0/1:178:71,107:71:2540:107:3828:-291.131,0,-175.268	1/1:130:0,130:0:0:130:4670:-420.459,-39.1339,0	0/1:28:12,16:12:428:16:576:-43.7461,0,-30.43	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	1/1:125:1,124:1:36:124:4456:-397.61,-34.0305,0	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/1:25:12,13:12:423:13:468:-34.9339,0,-30.8793	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:197:-18.0513,-1.80618,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:121:0,121:0:0:121:4327:-389.598,-36.4246,0	1/1:144:0,144:0:0:144:5168:-465.259,-43.3483,0	0/1:50:23,27:23:828:27:968:-72.3859,0,-59.7926	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:58:28,30:28:999:30:1076:-79.6931,0,-72.7648	0/1:33:22,11:22:792:11:387:-25.2319,0,-61.6717	0/1:115:38,77:38:1349:77:2759:-213.932,0,-87.0898	0/1:36:25,11:25:885:11:396:-25.1457,0,-69.1294	1/1:42:1,41:1:36:41:1476:-129.536,-9.04499,0	1/1:126:0,126:0:0:126:4506:-405.704,-37.9298,0	1/1:77:0,77:0:0:77:2772:-249.72,-23.1793,0	1/1:115:0,115:0:0:115:4132:-372.062,-34.6185,0	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	0/1:99:52,47:52:1868:47:1684:-122.045,0,-138.597	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:17:0,17:0:0:17:600:-54.3286,-5.11751,0	0/1:144:90,54:90:3232:54:1940:-131.528,0,-247.753	1/1:75:0,75:0:0:75:2662:-239.823,-22.5773,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:77:31,46:31:1116:46:1648:-125.429,0,-77.5724	0/1:20:13,7:13:468:7:252:-16.9796,0,-36.439	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	1/1:65:0,65:0:0:65:2336:-210.491,-19.567,0	1/1:82:1,81:1:36:81:2916:-259.076,-21.0862,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:131:0,131:0:0:131:4677:-421.091,-39.4349,0	1/1:175:2,173:2:72:173:6203:-551.528,-45.8435,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:99:1,98:1:36:98:3516:-313.051,-26.2037,0	0/1:137:103,34:103:3675:34:1224:-69.2259,0,-289.71	1/1:28:0,28:0:0:28:1000:-90.3108,-8.42884,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:173:77,96:77:2764:96:3429:-256.744,0,-196.92	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	1/1:153:0,153:0:0:153:5492:-494.405,-46.0576,0	1/1:103:0,103:0:0:103:3692:-332.482,-31.0061,0	0/1:108:53,55:53:1872:55:1976:-145.603,0,-136.245	0/1:64:29,35:29:1036:35:1252:-93.7192,0,-74.288	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:176:1,175:1:36:175:6257:-559.625,-49.383,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:45:27,18:27:960:18:648:-45.1055,0,-73.1699	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:72:35,37:35:1252:37:1324:-97.7879,0,-91.3109	1/1:16:1,15:1:36:15:536:-44.9765,-1.21821,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:57:38,19:38:1368:19:684:-44.7316,0,-106.262	0/1:113:56,57:56:1987:57:2024:-148.409,0,-145.087	0/1:53:41,12:41:1468:12:428:-22.9042,0,-116.462	1/1:110:0,110:0:0:110:3944:-355.151,-33.1133,0	1/1:77:0,77:0:0:77:2746:-247.379,-23.1793,0
chr03	23040439	.	G	A	18100.5	PASS	AB=0.517944;ABP=8.77702;AC=31;AF=0.164894;AN=188;AO=1078;CIGAR=1X;DP=6207;DPB=6207;DPRA=1.15807;EPP=2343.86;EPPR=11112.3;GTI=0;LEN=1;MEANALT=1.075;MQM=59.9926;MQMR=59.9852;NS=94;NUMALT=1;ODDS=1.686;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38568;QR=183349;RO=5124;RPL=1;RPP=2335.18;RPPR=11112.3;RPR=1077;RUN=1;SAF=1;SAP=2335.18;SAR=1077;SRF=0;SRP=11129.6;SRR=5124;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:13,19:13:468:19:680:-51.8962,0,-32.8267	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/1:112:65,47:65:2340:47:1692:-118.851,0,-177.144	0/0:108:108,0:108:3845:0:0:0,-32.5112,-346.246	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/0:80:80,0:80:2867:0:0:0,-24.0824,-258.258	0/1:44:22,22:22:792:22:783:-57.5476,0,-58.3604	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.368	0/1:63:28,35:28:1008:35:1241:-93.0292,0,-72.0715	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:35:35,0:35:1236:0:0:0,-10.536,-111.541	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:32:10,22:10:360:22:792:-61.9727,0,-23.1113	0/0:25:24,1:24:860:1:36:0,-3.92747,-74.1236	0/1:30:13,17:13:468:17:589:-44.3024,0,-33.4287	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.743	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:68:68,0:68:2439:0:0:0,-20.47,-219.764	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/0:31:30,1:30:1076:1:36:0,-5.73365,-93.5546	0/1:178:107,71:107:3825:71:2556:-176.706,0,-290.862	0/0:129:129,0:129:4617:0:0:0,-38.8329,-415.692	0/1:28:16,12:16:563:12:428:-30.43,0,-42.5703	0/0:91:91,0:91:3263:0:0:0,-27.3937,-293.889	0/0:126:125,1:125:4479:1:36:0,-34.3315,-399.68	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:26:13,13:13:468:13:462:-34.0894,0,-34.6329	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:121:121,0:121:4304:0:0:0,-36.4246,-387.478	0/0:145:145,0:145:5188:0:0:0,-43.6493,-467.057	0/1:51:28,23:28:980:23:828:-59.4916,0,-73.1576	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:58:30,28:30:1076:28:1008:-73.5766,0,-79.6931	0/1:32:10,22:10:360:22:792:-61.9727,0,-23.1113	0/1:116:77,39:77:2743:39:1374:-89.0351,0,-212.193	0/1:35:10,25:10:360:25:885:-69.4305,0,-22.2083	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.372	0/0:126:126,0:126:4501:0:0:0,-37.9298,-405.253	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/1:102:47,55:47:1662:55:1972:-147.05,0,-119.158	0/0:40:39,0:39:1404:0:0:0,-11.7402,-126.299	0/0:18:17,0:17:608:0:0:0,-5.11751,-54.7677	0/1:146:54,92:54:1929:92:3300:-253.268,0,-129.934	0/0:74:73,1:73:2628:1:36:0,-18.6779,-233.168	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:77:44,32:44:1569:32:1137:-79.399,0,-118.262	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9171	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:17:12,5:12:419:5:180:-11.4346,0,-32.9252	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.608	0/0:81:80,1:80:2861:1:36:0,-20.7852,-254.127	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:132:132,0:132:4732:0:0:0,-39.736,-426.038	0/0:175:173,2:173:6228:2:72:0,-45.8435,-553.775	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.027	0/0:98:97,1:97:3451:1:36:0,-25.9027,-307.203	0/1:136:34,102:34:1209:102:3648:-287.585,0,-68.1741	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9098	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:174:96,78:96:3401:78:2789:-198.861,0,-253.924	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.191	0/0:153:153,0:153:5485:0:0:0,-46.0576,-493.774	0/0:103:103,0:103:3687:0:0:0,-31.0061,-332.032	0/1:109:55,54:55:1968:54:1929:-141.073,0,-144.583	0/1:61:32,29:32:1152:29:1035:-75.1002,0,-85.6273	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:178:176,1:176:6316:1:36:0,-50.0439,-564.932	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:45:18,27:18:648:27:968:-73.891,0,-45.1055	0/1:23:7,16:7:244:16:572:-44.8897,0,-15.3757	0/1:74:38,35:38:1368:35:1252:-90.6501,0,-101.086	0/0:16:15,1:15:540:1:36:0,-1.2182,-45.3383	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.108	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:56:19,37:19:680:37:1332:-103.325,0,-44.6715	0/1:112:59,53:59:2105:53:1900:-137.563,0,-155.997	0/1:53:12,41:12:428:41:1472:-116.822,0,-22.9042	0/0:111:111,0:111:3956:0:0:0,-33.4143,-356.23	0/0:76:76,0:76:2702:0:0:0,-22.8783,-243.421
chr03	23040456	.	T	C	110036	PASS	AB=0.480157;ABP=9.99072;AC=155;AF=0.833333;AN=186;AO=5044;CIGAR=1X;DP=6117;DPB=6117;DPRA=0;EPP=10955.9;EPPR=2259.69;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.9778;MQMR=59.9925;NS=93;NUMALT=1;ODDS=1.57756;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180299;QR=38339;RO=1071;RPL=5044;RPP=10955.9;RPPR=2259.69;RPR=0;RUN=1;SAF=0;SAP=10955.9;SAR=5044;SRF=0;SRP=2328.66;SRR=1071;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:18,13:18:644:13:460:-32.4034,0,-48.9587	1/1:58:0,58:0:0:58:2070:-186.571,-17.4597,0	0/1:111:47,64:47:1669:64:2276:-171.688,0,-117.081	1/1:107:0,107:0:0:107:3835:-345.345,-32.2102,0	1/1:60:0,60:0:0:60:2132:-192.149,-18.0618,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:97:0,97:0:0:97:3488:-314.129,-29.1999,0	1/1:81:0,81:0:0:81:2911:-262.217,-24.3834,0	0/1:43:22,21:22:776:21:752:-55.062,0,-57.2179	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	1/1:70:0,70:0:0:70:2497:-224.982,-21.0721,0	0/1:62:34,28:34:1224:28:1008:-72.3725,0,-91.8032	1/1:45:0,45:0:0:45:1599:-144.199,-13.5464,0	1/1:35:0,35:0:0:35:1243:-112.173,-10.5361,0	1/1:46:1,45:1:36:45:1603:-140.961,-10.2491,0	0/1:32:22,10:22:784:10:360:-23.1113,0,-61.251	1/1:25:1,24:1:36:24:864:-74.4843,-3.92748,0	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	1/1:31:1,30:1:36:30:1076:-93.5546,-5.73366,0	0/1:174:69,105:69:2480:105:3761:-286.308,0,-171.074	1/1:128:0,128:0:0:128:4580:-412.365,-38.5318,0	0/1:27:12,15:12:432:15:536:-40.447,0,-31.0934	1/1:91:0,91:0:0:91:3260:-293.621,-27.3937,0	1/1:125:1,124:1:36:124:4444:-396.532,-34.0305,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:12:3,9:3:108:9:316:-25.1665,0,-6.46281	0/1:26:13,13:13:468:13:464:-34.2707,0,-34.6329	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:121:0,121:0:0:121:4325:-389.419,-36.4246,0	1/1:140:0,139:0:0:139:4958:-446.008,-41.8432,0	0/1:51:23,28:23:828:28:999:-74.872,0,-59.4916	.:.:.:.:.:.:.:.	0/1:56:27,29:27:972:29:1044:-77.4171,0,-70.9402	0/1:32:23,9:23:828:9:324:-19.8729,0,-65.2112	0/1:114:39,75:39:1377:75:2655:-204.877,0,-89.9093	0/1:36:25,11:25:892:11:392:-24.783,0,-69.7626	1/1:38:0,38:0:0:38:1360:-122.698,-11.4391,0	1/1:122:0,122:0:0:122:4342:-390.953,-36.7257,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:114:0,114:0:0:114:4088:-368.105,-34.3174,0	1/1:98:0,98:0:0:98:3503:-315.48,-29.5009,0	0/1:103:56,47:56:2016:47:1671:-119.67,0,-150.707	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:142:89,53:89:3184:53:1904:-128.891,0,-244.038	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:79:32,47:32:1140:47:1686:-128.246,0,-79.1278	0/1:20:13,7:13:464:7:248:-16.6148,0,-36.0769	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:17:5,12:5:180:12:428:-33.7413,0,-11.4346	1/1:66:0,66:0:0:66:2349:-211.667,-19.868,0	1/1:80:1,79:1:36:79:2820:-250.441,-20.4841,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:130:1,129:1:36:129:4614:-411.825,-35.5356,0	1/1:171:2,169:2:72:169:6039:-536.778,-44.6394,0	1/1:56:0,56:0:0:56:1991:-179.464,-16.8577,0	1/1:66:0,66:0:0:66:2368:-213.377,-19.868,0	1/1:98:1,97:1:36:97:3472:-309.094,-25.9027,0	0/1:133:99,34:99:3552:34:1199:-68.1778,0,-279.851	1/1:28:0,28:0:0:28:986:-89.0517,-8.42884,0	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:173:78,95:78:2792:95:3391:-253.326,0,-199.434	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:149:0,149:0:0:149:5332:-480.014,-44.8535,0	1/1:98:0,98:0:0:98:3490:-314.311,-29.5009,0	0/1:110:55,55:55:1972:55:1972:-144.642,0,-144.642	0/1:64:30,34:30:1057:34:1224:-91.2011,0,-76.173	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:71:0,71:0:0:71:2520:-226.964,-21.3731,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:173:0,173:0:0:173:6202:-558.273,-52.0782,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:44:26,18:26:932:18:648:-45.4066,0,-70.9535	0/1:22:16,6:16:576:6:216:-13.1679,0,-45.5523	0/1:71:36,35:36:1288:35:1251:-91.5211,0,-94.8505	1/1:16:1,15:1:36:15:536:-44.9765,-1.21821,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:46:0,46:0:0:46:1626:-146.627,-13.8474,0	0/1:56:36,20:36:1292:20:720:-48.2711,0,-99.7261	0/1:113:56,57:56:2004:57:2018:-147.871,0,-146.617	0/1:53:41,12:41:1472:12:432:-23.2666,0,-116.822	1/1:105:0,104:0:0:104:3710:-333.742,-31.3071,0	1/1:76:0,76:0:0:76:2701:-243.33,-22.8783,0
chr03	23047454	.	C	T	3322.57	PASS	AB=0.277087;ABP=488.996;AC=19;AF=0.101064;AN=188;AO=321;CIGAR=1X;DP=5054;DPB=5054;DPRA=1.13301;EPP=700.053;EPPR=10271.9;GTI=2;LEN=1;MEANALT=1.04167;MQM=52.053;MQMR=56.5961;NS=94;NUMALT=1;ODDS=2.07264;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=11494;QR=167215;RO=4729;RPL=321;RPP=700.053;RPPR=10271.9;RPR=0;RUN=1;SAF=321;SAP=700.053;SAR=0;SRF=4729;SRP=10271.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:852:0:0:0,-7.22472,-67.2815	0/0:44:44,0:44:1556:0:0:0,-13.2453,-140.332	0/0:34:34,0:34:1220:0:0:0,-10.235,-102.589	0/0:167:167,0:167:5909:0:0:0,-50.272,-531.923	0/0:29:28,0:28:983:0:0:0,-8.42884,-88.1943	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.0424	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.655	0/0:59:59,0:59:2094:0:0:0,-17.7608,-171.266	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:70:70,0:70:2476:0:0:0,-21.0721,-223.095	0/0:37:37,0:37:1324:0:0:0,-11.1381,-104.757	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:32:32,0:32:1128:0:0:0,-9.63296,-101.826	0/0:18:18,0:18:632:0:0:0,-5.41854,-51.8692	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:9:9,0:9:324:0:0:0,-2.70927,-23.8229	0/0:86:86,0:86:3053:0:0:0,-25.8886,-274.999	0/0:146:146,0:146:5143:0:0:0,-43.9504,-463.018	0/0:66:66,0:66:2326:0:0:0,-19.868,-208.97	0/0:75:75,0:75:2641:0:0:0,-22.5772,-237.937	0/1:47:37,10:37:1299:10:360:-18.5136,0,-103.062	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.499	0/1:187:139,47:139:4874:47:1688:-95.3671,0,-352.156	0/0:130:130,0:130:4606:0:0:0,-39.1339,-414.705	0/0:21:20,1:20:708:1:36:0,-2.7324,-52.449	0/0:146:146,0:146:5111:0:0:0,-43.9504,-460.124	0/0:80:77,3:77:2726:3:108:0,-14.0189,-233.189	0/1:83:52,31:52:1841:31:1104:-74.4465,0,-140.983	0/1:11:3,8:3:108:8:288:-22.89,0,-6.76384	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.9214	0/1:5:3,2:3:104:2:72:-5.31855,0,-8.19766	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:119:119,0:119:4186:0:0:0,-35.8226,-376.909	0/0:81:81,0:81:2878:0:0:0,-24.3834,-259.257	0/0:28:28,0:28:1008:0:0:0,-8.42884,-82.5824	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:87:64,23:64:2264:23:824:-48.1104,0,-166.577	0/1:18:13,5:13:464:5:180:-11.0919,0,-31.2015	0/0:44:44,0:44:1563:0:0:0,-13.2453,-129.969	0/0:33:33,0:33:1184:0:0:0,-9.93399,-101.216	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:57:57,0:57:1984:0:0:0,-17.1587,-178.815	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:100:74,26:74:2613:26:923:-53.0832,0,-205.315	0/0:50:50,0:50:1723:0:0:0,-15.0515,-155.351	0/0:84:84,0:84:2942:0:0:0,-25.2865,-245.779	0/0:52:52,0:52:1820:0:0:0,-15.6536,-164.065	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:38:24,14:24:856:14:504:-34.1719,0,-57.4625	0/0:27:27,0:27:945:0:0:0,-8.12781,-85.3622	0/1:10:7,3:7:252:3:108:-7.04568,0,-18.1177	0/1:94:63,31:63:2231:31:1116:-72.2036,0,-147.683	0/0:27:27,0:27:954:0:0:0,-8.12781,-80.9867	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:25:25,0:25:874:0:0:0,-7.52575,-76.2461	0/0:53:53,0:53:1877:0:0:0,-15.9546,-168.717	0/0:57:57,0:57:1995:0:0:0,-17.1587,-179.821	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:221:221,0:221:7840:0:0:0,-66.5276,-705.57	0/0:109:109,0:109:3823:0:0:0,-32.8123,-344.271	0/1:48:38,10:38:1347:10:360:-18.2125,0,-107.08	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	0/0:93:92,1:92:3260:1:36:0,-24.4066,-289.661	0/0:65:63,2:63:2220:2:72:0,-12.7474,-175.049	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/1:42:33,9:33:1150:9:320:-16.4298,0,-91.1612	0/0:45:45,0:45:1592:0:0:0,-13.5463,-124.493	0/0:29:27,2:27:968:2:72:0,-1.90617,-80.6137	0/0:102:102,0:102:3545:0:0:0,-30.7051,-318.484	0/0:79:79,0:79:2801:0:0:0,-23.7814,-252.33	0/1:47:34,13:34:1212:13:464:-26.506,0,-89.6059	0/0:60:60,0:60:2148:0:0:0,-18.0618,-160.462	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:29:29,0:29:1014:0:0:0,-8.72987,-91.0673	0/1:60:41,19:41:1456:19:684:-43.7087,0,-112.169	0/0:128:127,0:127:4520:0:0:0,-38.2308,-406.608	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.942	0/0:31:31,0:31:1072:0:0:0,-9.33193,-91.6604	0/0:26:26,0:26:936:0:0:0,-7.82678,-78.2731	0/0:86:85,0:85:3009:0:0:0,-25.5875,-250.67	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7595	0/1:75:56,19:56:1984:19:676:-38.4803,0,-156.257	0/1:60:48,12:48:1716:12:432:-21.0847,0,-136.664	0/0:12:12,0:12:424:0:0:0,-3.61236,-36.1473	0/1:61:47,14:47:1631:14:500:-26.8634,0,-114.3	0/1:53:37,16:37:1323:16:567:-35.2821,0,-86.4651	0/0:103:103,0:103:3646:0:0:0,-31.0061,-328.336	0/0:70:70,0:70:2485:0:0:0,-21.0721,-223.891
chr03	23047491	.	G	A	5520.2	PASS	AB=0.280987;ABP=695.457;AC=22;AF=0.11828;AN=186;AO=478;CIGAR=1X;DP=6206;DPB=6206;DPRA=1.36329;EPP=1040.97;EPPR=12408.6;GTI=4;LEN=1;MEANALT=1.04;MQM=59.9456;MQMR=59.9804;NS=93;NUMALT=1;ODDS=1.20479;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=17062;QR=204209;RO=5725;RPL=0;RPP=1040.97;RPPR=12417.3;RPR=478;RUN=1;SAF=0;SAP=1040.97;SAR=478;SRF=1;SRP=12426;SRR=5724;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:156:156,0:156:5538:0:0:0,-46.9607,-498.544	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/0:111:111,0:111:3914:0:0:0,-33.4143,-352.453	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.524	0/0:113:113,0:113:4043:0:0:0,-34.0164,-364.057	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:48:48,0:48:1696:0:0:0,-14.4494,-152.923	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:43:43,0:43:1527:0:0:0,-12.9443,-137.722	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946	0/0:112:111,0:111:3976:0:0:0,-33.4143,-357.669	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.531	0/1:42:32,10:32:1130:10:356:-19.738,0,-89.3637	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/1:275:194,81:194:6964:81:2899:-178.361,0,-544.039	0/0:134:134,0:134:4792:0:0:0,-40.338,-431.432	0/1:33:23,10:23:805:10:360:-22.8103,0,-62.8335	0/0:222:222,0:222:7925:0:0:0,-66.8287,-713.276	0/0:105:103,1:103:3656:1:36:0,-28.0687,-325.646	0/1:141:108,33:108:3848:33:1165:-62.7098,0,-304.073	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:120:120,0:120:4295:0:0:0,-36.1236,-386.727	0/0:96:96,0:96:3423:0:0:0,-28.8989,-308.187	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:124:96,28:96:3405:28:995:-52.5363,0,-269.332	0/1:16:12,4:12:413:4:144:-8.49714,0,-32.6813	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:37:36,1:36:1284:1:36:0,-7.53983,-112.265	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.631	0/1:210:153,57:153:5463:57:2038:-120.475,0,-428.58	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:99:99,0:99:3529:0:0:0,-29.802,-317.819	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:74:49,25:49:1755:25:892:-58.3235,0,-135.957	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:93:65,28:65:2316:28:986:-61.0564,0,-180.702	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:55:55,0:55:1954:0:0:0,-16.5566,-176.134	.:.:.:.:.:.:.:.	0/0:265:265,0:265:9442:0:0:0,-79.7729,-849.743	0/0:176:174,2:174:6173:2:72:0,-46.1446,-548.829	0/1:81:56,25:56:2016:25:891:-56.1253,0,-157.329	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/0:86:85,1:85:3038:1:36:0,-22.2903,-270.022	0/0:69:69,0:69:2439:0:0:0,-20.7711,-219.763	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:40:34,6:34:1216:6:207:-6.92569,0,-97.7054	0/0:103:102,0:102:3624:0:0:0,-30.7051,-326.005	0/1:138:107,31:107:3771:31:1116:-59.2096,0,-297.96	0/0:103:103,0:103:3687:0:0:0,-31.0061,-332.032	0/0:172:172,0:172:6147:0:0:0,-51.7772,-553.33	0/1:40:25,15:25:887:15:536:-36.5336,0,-68.1069	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.734	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:98:59,39:59:2112:39:1391:-95.9873,0,-160.848	0/0:148:148,0:148:5274:0:0:0,-44.5524,-474.798	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.472	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:80:80,0:80:2838:0:0:0,-24.0824,-255.659	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:60:39,21:39:1387:21:752:-49.9445,0,-107.066	0/1:68:46,22:46:1648:22:786:-50.5367,0,-128.139	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:53:47,6:47:1684:6:216:-3.83592,0,-135.892	0/1:66:44,22:44:1580:22:792:-51.7377,0,-122.624	0/0:153:153,0:153:5447:0:0:0,-46.0576,-490.359	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663
chr03	23069739	.	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chr03	23127198	.	A	G	229548	PASS	AB=0.472909;ABP=28.5415;AC=155;AF=0.824468;AN=188;AO=10431;CIGAR=1X;DP=12582;DPB=12582;DPRA=0;EPP=22333.4;EPPR=4535.67;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.9768;MQMR=59.9267;NS=94;NUMALT=1;ODDS=6.50027;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=371839;QR=76889;RO=2143;RPL=10394;RPP=22333.4;RPPR=4527.1;RPR=37;RUN=1;SAF=10431;SAP=22653.6;SAR=0;SRF=2142;SRP=4647.79;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:20,38:20:720:38:1355:-104.79,0,-47.6608	1/1:145:0,145:0:0:145:5150:-463.642,-43.6494,0	0/1:157:92,65:92:3304:65:2336:-163.238,0,-250.308	1/1:254:0,254:0:0:254:9055:-814.931,-76.4616,0	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	1/1:76:0,76:0:0:76:2715:-244.594,-22.8783,0	1/1:275:0,275:0:0:275:9835:-885.077,-82.7833,0	1/1:109:0,109:0:0:109:3908:-351.913,-32.8123,0	1/1:114:1,113:1:36:113:4009:-357.402,-30.7191,0	0/1:126:78,48:78:2804:48:1719:-117.065,0,-214.669	1/1:168:0,168:0:0:168:5954:-535.969,-50.573,0	1/1:140:0,140:0:0:140:4952:-445.829,-42.1442,0	0/1:123:62,61:62:2224:61:2188:-160.159,0,-163.394	1/1:180:0,180:0:0:180:6433:-579.057,-54.1854,0	1/1:122:0,122:0:0:122:4320:-388.976,-36.7257,0	1/1:78:1,77:1:36:77:2709:-240.453,-19.8821,0	0/1:151:68,83:68:2440:83:2941:-219.466,0,-174.399	1/1:105:0,105:0:0:105:3750:-337.699,-31.6082,0	0/1:107:52,55:52:1864:55:1980:-146.264,0,-135.829	1/1:290:0,290:0:0:290:10368:-933.042,-87.2987,0	1/1:164:0,164:0:0:164:5816:-523.554,-49.3689,0	1/1:162:0,161:0:0:161:5742:-516.538,-48.4658,0	1/1:177:1,176:1:36:176:6269:-560.515,-49.684,0	1/1:164:0,164:0:0:164:5891:-530.297,-49.3689,0	1/1:96:0,96:0:0:96:3385:-304.865,-28.8989,0	0/1:336:183,153:183:6553:153:5442:-388.763,0,-488.702	1/1:135:0,135:0:0:135:4827:-434.585,-40.6391,0	0/1:50:36,14:36:1296:14:500:-30.2847,0,-101.892	1/1:309:0,308:0:0:308:10941:-984.23,-92.7172,0	1/1:157:3,152:3:108:152:5442:-479.832,-36.9443,0	1/1:173:0,173:0:0:173:6189:-557.097,-52.0782,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:38:18,20:18:648:20:697:-51.6115,0,-47.2127	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:13:0,13:0:0:13:453:-41.1005,-3.91339,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:319:1,318:1:32:318:11324:-1015.85,-92.8293,0	1/1:152:2,150:2:72:150:5343:-474.169,-38.9198,0	0/1:174:81,93:81:2884:93:3303:-245.108,0,-207.416	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:146:84,62:84:3020:62:2213:-155.483,0,-228.075	0/1:91:50,41:50:1796:41:1472:-105.382,0,-134.529	0/1:190:98,92:98:3505:92:3291:-239.214,0,-258.463	0/1:94:45,49:45:1607:49:1756:-130.027,0,-116.623	1/1:99:0,99:0:0:99:3510:-316.109,-29.802,0	1/1:129:1,127:1:36:127:4528:-404.089,-35.2934,0	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	1/1:168:0,168:0:0:168:5974:-537.75,-50.573,0	1/1:223:0,223:0:0:223:7970:-717.322,-67.1297,0	0/1:130:77,53:77:2768:53:1878:-130.164,0,-210.227	1/1:237:0,237:0:0:237:8472:-762.481,-71.3441,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:195:99,95:99:3552:95:3398:-247.333,0,-261.179	1/1:116:0,116:0:0:116:4151:-373.773,-34.9195,0	0/0:16:15,1:15:540:1:36:0,-1.2182,-45.3383	0/1:160:78,82:78:2800:82:2911:-214.062,0,-203.917	0/1:95:47,48:47:1684:48:1720:-126.488,0,-123.232	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:51:24,27:24:864:27:972:-72.4454,0,-62.73	1/1:130:0,130:0:0:130:4643:-418.032,-39.1339,0	1/1:190:1,189:1:36:189:6694:-598.94,-53.5974,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:201:0,200:0:0:200:7130:-639.632,-60.206,0	1/1:205:1,204:1:36:204:7313:-654.619,-58.1129,0	1/1:109:0,109:0:0:109:3912:-352.272,-32.8123,0	1/1:89:0,89:0:0:89:3178:-286.245,-26.7917,0	1/1:229:1,228:1:36:228:8109:-726.184,-65.3376,0	0/1:163:97,66:97:3480:66:2360:-163.591,0,-264.341	1/1:85:2,83:2:72:83:2971:-260.785,-18.7508,0	1/1:127:1,126:1:36:126:4484:-400.13,-34.6325,0	1/1:159:0,159:0:0:159:5668:-510.24,-47.8638,0	1/1:56:0,56:0:0:56:1995:-179.823,-16.8577,0	0/1:127:49,78:49:1745:78:2777:-211.94,0,-119.102	1/1:75:0,75:0:0:75:2676:-241.086,-22.5773,0	1/1:219:0,219:0:0:219:7793:-701.405,-65.9256,0	1/1:185:0,184:0:0:184:6573:-591.285,-55.3895,0	0/1:123:61,62:61:2196:62:2232:-164.117,0,-160.87	0/1:83:44,39:44:1563:39:1395:-100.863,0,-115.975	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	1/1:129:0,129:0:0:129:4632:-417.041,-38.8329,0	1/1:127:2,125:2:72:125:4468:-395.454,-31.3941,0	1/1:303:0,303:0:0:303:10813:-973.07,-91.2121,0	1/1:142:0,142:0:0:142:5047:-454.377,-42.7463,0	0/1:128:77,51:77:2768:51:1819:-125.459,0,-210.828	0/1:127:67,60:67:2408:60:2128:-153.556,0,-178.744	0/1:211:118,93:118:4240:93:3289:-232.711,0,-318.232	1/1:52:0,52:0:0:52:1859:-167.589,-15.6536,0	1/1:119:0,119:0:0:119:4212:-379.263,-35.8226,0	1/1:112:0,112:0:0:112:3975:-357.938,-33.7154,0	0/1:169:88,81:88:3168:81:2881:-208.653,0,-234.041	0/1:267:135,132:135:4856:132:4710:-343.685,0,-356.71	0/1:99:64,35:64:2300:35:1260:-83.9035,0,-177.459	1/1:94:0,94:0:0:94:3324:-299.379,-28.2968,0	1/1:125:0,125:0:0:125:4430:-398.87,-37.6288,0
chr03	23127201	.	GGAGATTGAC	GGAGATTGAT,AGAGATCGAT	274924	PASS	AB=0.473145,0.517862;ABP=28.0856,14.1031;AC=155,33;AF=0.824468,0.175532;AN=188;AO=10360,2099;CIGAR=9M1X,1X5M1X2M1X;DP=12576;DPB=12576.9;DPRA=0,0.96764;EPP=22222.4,4483.09;EPPR=8.80089;GTI=1;LEN=1,10;MEANALT=2.45745,3.07143;MQM=59.9912,59.9262;MQMR=60;NS=94;NUMALT=2;ODDS=7.30531;PAIRED=0,0;PAIREDR=0;PAO=2,3;PQA=7,108;PQR=7;PRO=2;QA=368734,73684;QR=213;RO=6;RPL=10328,2090;RPP=22222.4,4483.09;RPPR=4.45795;RPR=32,9;RUN=1,1;SAF=10360,2099;SAP=22499.5,4560.93;SAR=0,0;SRF=5;SRP=8.80089;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:59:0,39,20:0:0:39,20:1380,660:-166.107,-53.6861,-41.946,-112.759,0,-106.738	1/1:145:0,145,0:0:0:145,0:5142,0:-462.924,-43.6494,0,-462.924,-43.6494,-462.924	1/2:158:0,66,92:0:0:66,92:2349,3196:-451.614,-260.167,-240.299,-191.8,0,-164.105	1/1:252:0,249,0:0:0:249,0:8844,0:-795.611,-74.9565,0,-795.611,-74.9565,-795.611	1/1:68:0,68,0:0:0:68,0:2421,0:-218.145,-20.47,0,-218.145,-20.47,-218.145	1/1:77:0,77,0:0:0:77,0:2760,0:-248.642,-23.1793,0,-248.642,-23.1793,-248.642	1/1:281:0,280,0:0:0:280,0:9947,0:-894.815,-84.2884,0,-894.815,-84.2884,-894.815	1/1:113:1,111,0:1:36:111,0:3948,0:-351.913,-30.4769,0,-352.214,-33.4143,-355.151	1/1:113:0,112,1:0:0:112,1:4016,36:-361.268,-33.7154,0,-358.331,-30.4181,-358.03	1/2:124:0,45,75:0:0:45,75:1616,2627:-345.595,-213.767,-200.22,-131.849,0,-109.272	1/1:165:0,165,0:0:0:165,0:5846,0:-526.257,-49.67,0,-526.257,-49.67,-526.257	1/1:146:0,142,0:0:0:142,0:5013,0:-451.007,-42.7463,0,-451.007,-42.7463,-451.007	1/2:124:0,62,60:0:0:62,60:2216,2130:-354.229,-173.544,-154.88,-180.681,0,-162.619	1/1:182:0,182,0:0:0:182,0:6484,0:-583.647,-54.7875,0,-583.647,-54.7875,-583.647	1/1:118:0,118,0:0:0:118,0:4198,0:-378.003,-35.5215,0,-378.003,-35.5215,-378.003	1/1:79:0,77,1:0:0:77,1:2756,35:-247.932,-23.1793,0,-245.084,-20.3316,-244.783	1/2:147:0,80,67:0:0:80,67:2818,2341:-420.149,-190.722,-166.64,-229.719,0,-209.55	1/1:103:0,101,0:0:0:101,0:3603,0:-324.117,-30.404,0,-324.117,-30.404,-324.117	1/2:105:0,53,48:0:0:53,48:1872,1694:-290.392,-137.943,-121.988,-152.447,0,-137.998	1/1:294:0,290,0:0:0:290,0:10332,0:-929.502,-87.2987,0,-929.502,-87.2987,-929.502	1/1:166:0,165,0:0:0:165,0:5886,0:-529.489,-49.67,0,-529.489,-49.67,-529.489	1/1:172:0,167,0:0:0:167,0:5926,0:-533.118,-50.272,0,-533.118,-50.272,-533.118	1/1:172:0,171,1:0:0:171,1:6128,35:-551.269,-51.4761,0,-548.422,-48.2785,-548.121	1/1:166:0,166,0:0:0:166,0:5940,0:-534.706,-49.971,0,-534.706,-49.971,-534.706	1/1:97:0,97,0:0:0:97,0:3453,0:-310.982,-29.1999,0,-310.982,-29.1999,-310.982	1/2:340:0,158,178:0:0:158,178:5652,6228:-967.621,-506.739,-459.176,-460.929,0,-407.346	1/1:136:0,135,0:0:0:135,0:4832,0:-434.754,-40.6391,0,-434.754,-40.6391,-434.754	1/2:50:0,14,36:0:0:14,36:487,1254:-141.92,-102.323,-98.1087,-39.9448,0,-29.1077	1/1:301:0,299,0:0:0:299,0:10676,0:-960.386,-90.008,0,-960.386,-90.008,-960.386	1/1:154:1,146,3:1:36:146,3:5175,108:-462.301,-41.0124,0,-453.79,-35.1359,-455.824	1/1:175:0,171,0:0:0:171,0:6066,0:-545.755,-51.4761,0,-545.755,-51.4761,-545.755	1/2:13:0,4,9:0:0:4,9:144,324:-38.5463,-26.7966,-25.5925,-12.1095,0,-9.40023	1/2:38:0,19,19:0:0:19,19:680,680:-111.261,-55.8096,-50.09,-55.8096,0,-50.09	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:13:0,13,0:0:0:13,0:457,0:-41.4626,-3.91339,0,-41.4626,-3.91339,-41.4626	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/1:323:3,317,0:3:105:317,0:11236,0:-1001.36,-86.8652,0,-1002.26,-95.4265,-1010.8	1/1:146:0,144,2:0:0:144,2:5111,72:-459.772,-43.3483,0,-453.898,-37.1137,-453.296	1/2:178:0,98,79:0:0:98,79:3482,2742:-506.564,-222.824,-193.323,-283.672,0,-259.89	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:145:0,65,79:0:0:65,79:2315,2754:-412.791,-224.099,-204.532,-188.822,0,-165.04	1/2:91:1,39,48:1:36:39,48:1396,1708:-249.834,-136.292,-127.489,-110.933,0,-99.4215	1/2:190:0,90,100:0:0:90,100:3209,3483:-545.107,-283.52,-256.428,-261.88,0,-231.777	1/2:94:0,49,45:0:0:49,45:1748,1585:-271.893,-129.393,-114.643,-142.854,0,-129.307	1/1:102:0,101,0:0:0:101,0:3584,0:-322.407,-30.404,0,-322.407,-30.404,-322.407	1/1:126:0,126,0:0:0:126,0:4520,0:-406.967,-37.9298,0,-406.967,-37.9298,-406.967	1/1:102:0,101,0:0:0:101,0:3588,0:-322.766,-30.404,0,-322.766,-30.404,-322.766	1/1:163:0,162,0:0:0:162,0:5736,0:-515.997,-48.7669,0,-515.997,-48.7669,-515.997	1/1:222:0,222,0:0:0:222,0:7918,0:-712.645,-66.8287,0,-712.645,-66.8287,-712.645	1/2:129:0,52,76:0:0:52,76:1872,2683:-371.225,-218.477,-202.823,-152.746,0,-129.867	1/1:242:0,238,0:0:0:238,0:8497,0:-764.426,-71.6451,0,-764.426,-71.6451,-764.426	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/2:195:0,98,95:0:0:98,95:3478,3345:-555.679,-272.303,-242.803,-283.37,0,-254.772	1/1:120:0,118,0:0:0:118,0:4203,0:-378.151,-35.5215,0,-378.151,-35.5215,-378.151	2/2:16:0,1,11:0:0:1,11:36,386:-34.7395,-31.8011,-31.5,-3.31133,-0.366427,0	1/2:158:0,81,77:0:0:81,77:2858,2721:-454.635,-221.917,-197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chr03	23127243	.	T	C	177187	PASS	AB=0.514701;ABP=8.18164;AC=154;AF=0.827957;AN=186;AO=8088;CIGAR=1X;DP=9438;DPB=9438;DPRA=0;EPP=17565.9;EPPR=2914.96;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9912;MQMR=59.9517;NS=93;NUMALT=1;ODDS=4.9519;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286061;QR=48119;RO=1345;RPL=32;RPP=17289;RPPR=2837.43;RPR=8056;RUN=1;SAF=32;SAP=17289;SAR=8056;SRF=9;SRP=2845.99;SRR=1336;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:30,22:30:1076:22:771:-54.0567,0,-81.4993	1/1:139:0,138:0:0:138:4861:-437.286,-41.5421,0	0/1:84:45,39:45:1607:39:1358:-97.2277,0,-119.633	1/1:188:0,187:0:0:187:6621:-595.612,-56.2926,0	1/1:80:0,80:0:0:80:2820:-254.038,-24.0824,0	1/1:85:0,85:0:0:85:2998:-270.051,-25.5876,0	1/1:194:1,193:1:36:193:6809:-609.288,-54.8015,0	1/1:76:0,76:0:0:76:2688:-242.164,-22.8783,0	1/1:102:0,102:0:0:102:3643:-328.075,-30.7051,0	0/1:159:66,93:66:2344:93:3309:-250.164,0,-163.353	1/1:34:0,34:0:0:34:1195:-107.855,-10.235,0	1/1:91:0,91:0:0:91:3199:-288.134,-27.3937,0	0/1:99:59,40:59:2124:40:1383:-94.9614,0,-161.626	1/1:62:0,62:0:0:62:2206:-198.804,-18.6639,0	1/1:105:0,105:0:0:105:3709:-334.014,-31.6082,0	1/1:76:0,76:0:0:76:2663:-239.914,-22.8783,0	0/1:52:25,27:25:892:27:959:-70.9718,0,-64.9461	1/1:87:0,87:0:0:87:3084:-277.788,-26.1896,0	0/1:41:16,25:16:572:25:868:-66.0907,0,-39.4712	1/1:206:0,206:0:0:206:7314:-658.312,-62.0122,0	1/1:205:0,205:0:0:205:7255:-652.994,-61.7112,0	1/1:97:0,97:0:0:97:3441:-309.904,-29.1999,0	1/1:115:0,115:0:0:115:4080:-367.385,-34.6185,0	1/1:145:0,145:0:0:145:5123:-461.214,-43.6494,0	1/1:121:0,121:0:0:121:4303:-387.448,-36.4246,0	0/1:278:118,159:118:4224:159:5630:-423.079,0,-296.595	1/1:139:0,139:0:0:139:4934:-444.211,-41.8432,0	0/1:49:17,32:17:600:32:1119:-86.2663,0,-39.5787	1/1:201:0,201:0:0:201:7102:-639.242,-60.507,0	1/1:138:0,138:0:0:138:4924:-443.31,-41.5421,0	1/1:94:0,94:0:0:94:3362:-302.795,-28.2968,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:272:1,271:1:36:271:9524:-853.53,-78.2819,0	1/1:168:1,166:1:36:166:5896:-527.153,-47.0336,0	0/1:94:50,44:50:1784:44:1553:-111.763,0,-132.546	.:.:.:.:.:.:.:.	0/1:125:56,69:56:2012:69:2420:-180.424,0,-142.361	0/1:38:18,20:18:640:20:712:-52.9675,0,-46.4902	0/1:136:62,74:62:2224:74:2630:-196.007,0,-159.484	0/1:103:58,45:58:2088:45:1557:-109.41,0,-157.098	1/1:88:0,88:0:0:88:3117:-280.757,-26.4906,0	1/1:121:1,120:1:36:120:4239:-378.094,-32.8264,0	1/1:115:0,115:0:0:115:4065:-366.038,-34.6185,0	1/1:147:0,147:0:0:147:5228:-470.659,-44.2514,0	1/1:115:0,115:0:0:115:4078:-367.206,-34.6185,0	0/1:124:50,74:50:1781:74:2608:-197.64,0,-123.243	1/1:208:0,208:0:0:208:7354:-661.914,-62.6142,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:105:40,65:40:1432:65:2315:-177.002,0,-97.5694	1/1:51:1,50:1:36:50:1765:-155.533,-11.7543,0	0/1:20:8,12:8:284:12:432:-33.2006,0,-19.8828	0/1:101:40,61:40:1432:61:2188:-166.782,0,-98.7736	0/1:71:35,36:35:1256:36:1273:-93.4978,0,-91.9722	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:80:0,80:0:0:80:2855:-257.188,-24.0824,0	1/1:123:0,123:0:0:123:4301:-387.273,-37.0267,0	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	1/1:150:1,149:1:36:149:5297:-473.267,-41.5562,0	1/1:176:1,175:1:36:175:6207:-555.133,-49.383,0	1/1:75:0,75:0:0:75:2650:-238.746,-22.5773,0	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	1/1:172:0,172:0:0:172:6091:-548.292,-51.7772,0	0/1:123:81,42:81:2893:42:1473:-95.8338,0,-223.578	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:73:0,73:0:0:73:2554:-230.108,-21.9752,0	1/1:111:0,111:0:0:111:3940:-354.793,-33.4143,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:112:45,67:45:1616:67:2368:-179.647,0,-112.015	1/1:98:0,98:0:0:98:3464:-311.971,-29.5009,0	1/1:136:2,134:2:72:134:4718:-417.837,-34.1034,0	1/1:139:0,139:0:0:139:4932:-444.03,-41.8432,0	0/1:92:46,46:46:1652:46:1629:-119.202,0,-121.266	0/1:76:34,42:34:1208:42:1490:-111.515,0,-86.1478	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	1/1:111:0,111:0:0:111:3918:-352.815,-33.4143,0	1/1:109:0,109:0:0:109:3873:-348.763,-32.8123,0	1/1:319:0,318:0:0:318:11265:-1013.38,-95.7275,0	1/1:114:0,114:0:0:114:4016:-361.633,-34.3174,0	0/1:77:43,34:43:1536:34:1216:-86.5673,0,-115.354	0/1:99:47,52:47:1688:52:1813:-133.647,0,-122.405	0/1:190:107,83:107:3832:83:2905:-204.49,0,-287.881	1/1:69:0,69:0:0:69:2438:-219.675,-20.7711,0	1/1:113:0,113:0:0:113:3980:-358.391,-34.0164,0	1/1:103:0,103:0:0:103:3618:-325.827,-31.0061,0	0/1:21:9,12:9:311:12:413:-31.1762,0,-22.0021	0/1:94:38,56:38:1364:56:1982:-150.356,0,-94.7639	0/1:98:74,24:74:2639:24:855:-47.7701,0,-208.256	1/1:93:0,93:0:0:93:3315:-298.568,-27.9958,0	1/1:144:0,144:0:0:144:5053:-454.919,-43.3483,0
chr03	23127249	.	T	G	20308.2	PASS	AB=0.473742;ABP=19.3175;AC=32;AF=0.172043;AN=186;AO=1295;CIGAR=1X;DP=9441;DPB=9441;DPRA=0.817606;EPP=2815.07;EPPR=17615.9;GTI=1;LEN=1;MEANALT=1.05556;MQM=59.956;MQMR=59.9834;NS=93;NUMALT=1;ODDS=3.18;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45437;QR=291642;RO=8143;RPL=0;RPP=2815.07;RPPR=17615.9;RPR=1295;RUN=1;SAF=0;SAP=2815.07;SAR=1295;SRF=0;SRP=17685.3;SRR=8143;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:22,29:22:792:29:1016:-76.3973,0,-56.2531	0/0:143:143,0:143:5114:0:0:0,-43.0473,-460.402	0/1:80:41,38:41:1468:38:1352:-97.8393,0,-108.205	0/0:191:191,0:191:6856:0:0:0,-57.4967,-617.107	0/0:82:82,0:82:2923:0:0:0,-24.6845,-263.305	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:190:190,0:190:6828:0:0:0,-57.1957,-614.585	0/0:80:80,0:80:2847:0:0:0,-24.0824,-256.468	0/0:102:102,0:102:3647:0:0:0,-30.7051,-328.434	0/1:159:92,67:92:3304:67:2322:-161.372,0,-249.714	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:92:92,0:92:3289:0:0:0,-27.6948,-296.228	0/1:99:41,58:41:1451:58:2035:-153.618,0,-101.083	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:105:105,0:105:3747:0:0:0,-31.6081,-337.431	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.485	0/1:53:28,25:28:1000:25:879:-63.4722,0,-74.3608	0/0:87:86,0:86:3076:0:0:0,-25.8886,-276.709	0/1:40:25,15:25:900:15:512:-34.3605,0,-69.2798	0/0:203:203,0:203:7288:0:0:0,-61.1091,-655.968	0/0:209:209,0:209:7473:0:0:0,-62.9153,-672.483	0/0:98:98,0:98:3499:0:0:0,-29.5009,-315.121	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.386	0/0:146:146,0:146:5240:0:0:0,-43.9504,-471.736	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536	0/1:274:159,115:159:5704:115:4082:-285.086,0,-430.994	0/0:137:137,0:137:4920:0:0:0,-41.2411,-442.949	0/1:51:32,19:32:1126:19:629:-41.5668,0,-86.2765	0/0:201:201,0:201:7185:0:0:0,-60.507,-646.705	0/0:139:139,0:139:5000:0:0:0,-41.8432,-450.145	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/1:13:7,6:7:252:6:203:-14.6878,0,-19.1156	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:271:271,0:271:9702:0:0:0,-81.5791,-873.128	0/0:165:165,0:165:5928:0:0:0,-49.6699,-533.492	0/1:94:45,49:45:1604:49:1717:-126.514,0,-116.353	.:.:.:.:.:.:.:.	0/1:126:70,56:70:2508:56:1967:-139.001,0,-188.042	0/1:34:20,14:20:720:14:500:-35.1012,0,-54.8938	0/1:133:74,59:74:2648:59:2072:-146.712,0,-198.53	0/1:101:46,55:46:1648:55:1910:-141.682,0,-118.205	0/0:87:87,0:87:3099:0:0:0,-26.1896,-279.138	0/0:123:122,1:122:4360:1:32:0,-33.8274,-389.376	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.821	0/0:147:147,0:147:5268:0:0:0,-44.2514,-474.256	0/0:115:115,0:115:4120:0:0:0,-34.6184,-370.984	0/1:127:77,50:77:2751:50:1736:-118.292,0,-209.601	0/0:208:208,0:208:7468:0:0:0,-62.6142,-672.156	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:103:66,37:66:2368:37:1296:-85.9322,0,-182.372	0/0:53:52,1:52:1864:1:32:0,-12.7553,-164.84	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	0/1:102:63,39:63:2260:39:1387:-94.4231,0,-172.958	0/1:71:35,36:35:1252:36:1254:-91.7854,0,-91.6119	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0014	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/0:125:125,0:125:4457:0:0:0,-37.6287,-401.3	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:158:158,0:158:5655:0:0:0,-47.5627,-509.069	0/0:179:177,1:177:6348:1:36:0,-50.3449,-567.811	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:171:171,0:171:6132:0:0:0,-51.4761,-551.979	0/1:120:44,76:44:1575:76:2672:-204.6,0,-105.917	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.941	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:111:68,43:68:2431:43:1520:-103.679,0,-185.525	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/0:137:135,2:135:4836:2:72:0,-34.4044,-428.187	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946	0/1:88:46,42:46:1652:42:1493:-108.173,0,-122.478	0/1:73:41,32:41:1459:32:1131:-80.1226,0,-109.63	0/1:10:8,2:8:284:2:68:-3.44741,0,-22.8931	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/0:113:113,0:113:4026:0:0:0,-34.0164,-362.529	0/0:320:320,0:320:11480:0:0:0,-96.3296,-1033.07	0/0:121:121,0:121:4321:0:0:0,-36.4246,-389.065	0/1:74:34,40:34:1224:40:1419:-105.73,0,-88.1908	0/1:100:53,47:53:1904:47:1648:-118.502,0,-141.535	0/1:185:82,103:82:2910:103:3610:-269.416,0,-206.445	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/0:116:116,0:116:4135:0:0:0,-34.9195,-372.335	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/1:21:12,9:12:432:9:315:-22.3656,0,-32.8996	0/1:94:56,38:56:2012:38:1348:-93.3234,0,-153.056	0/1:95:23,72:23:828:72:2488:-195.572,0,-46.2463	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.337	0/0:145:145,0:145:5182:0:0:0,-43.6493,-466.519
chr03	23142652	.	TTT	ATA,ATT	187624	PASS	AB=0.487296,0.510808;ABP=6.70683,5.68573;AC=155,33;AF=0.824468,0.175532;AN=188;AO=7408,1361;CIGAR=1X1M1X,1X2M;DP=8785;DPB=8785.33;DPRA=17.3399,0.931458;EPP=16089.3,2958.38;EPPR=5.18177;GTI=2;LEN=3,1;MEANALT=1.51087,2.14706;MQM=44.5603,59.5738;MQMR=60;NS=94;NUMALT=2;ODDS=3.59471;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=261568,48826;QR=36;RO=1;RPL=7408,1361;RPP=16089.3,2958.38;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=7408,1361;SAP=16089.3,2958.38;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:63:0,16,47:0:0:16,47:572,1684:-183.592,-137.639,-132.822,-46.2513,0,-32.1029	1/1:115:0,114,0:0:0:114,0:4007,0:-352.022,-34.3174,0,-352.022,-34.3174,-352.022	1/2:167:0,89,78:0:0:89,78:3122,2800:-477.617,-228.719,-201.927,-249.25,0,-225.77	1/1:180:0,180,0:0:0:180,0:6362,0:-563.868,-54.1854,0,-563.868,-54.1854,-563.868	1/1:1:0,1,0:0:0:1,0:36,0:-3.45449,-0.30103,0,-3.45449,-0.30103,-3.45449	1/1:10:0,10,0:0:0:10,0:356,0:-31.9608,-3.0103,0,-31.9608,-3.0103,-31.9608	1/1:109:0,109,0:0:0:109,0:3846,0:-340.993,-32.8123,0,-340.993,-32.8123,-340.993	1/1:120:0,120,0:0:0:120,0:4251,0:-376.351,-36.1236,0,-376.351,-36.1236,-376.351	1/1:139:0,139,0:0:0:139,0:4892,0:-431.605,-41.8432,0,-431.605,-41.8432,-431.605	1/2:82:0,51,31:0:0:51,31:1814,1112:-235.491,-91.031,-75.6785,-144.814,0,-135.482	1/1:81:0,80,0:0:0:80,0:2841,0:-250.778,-24.0824,0,-250.778,-24.0824,-250.778	1/1:147:0,146,0:0:0:146,0:5117,0:-452.773,-43.9504,0,-452.773,-43.9504,-452.773	1/2:138:0,72,66:0:0:72,66:2533,2376:-395.69,-194.168,-172.494,-201.875,0,-182.007	1/1:84:0,84,0:0:0:84,0:2956,0:-260.895,-25.2865,0,-260.895,-25.2865,-260.895	1/1:96:0,96,0:0:0:96,0:3432,0:-303.546,-28.8989,0,-303.546,-28.8989,-303.546	1/1:69:0,69,0:0:0:69,0:2440,0:-215.978,-20.7711,0,-215.978,-20.7711,-215.978	1/2:38:0,20,18:0:0:20,18:711,640:-109.422,-52.5084,-46.4878,-57.2666,0,-51.8481	1/1:36:0,36,0:0:0:36,0:1271,0:-112.625,-10.8371,0,-112.625,-10.8371,-112.625	1/2:31:0,16,15:0:0:16,15:566,540:-89.8187,-44.4164,-39.5999,-45.7568,0,-41.2414	1/1:163:0,163,0:0:0:163,0:5755,0:-509.237,-49.0679,0,-509.237,-49.0679,-509.237	1/1:193:0,193,0:0:0:193,0:6809,0:-602.46,-58.0988,0,-602.46,-58.0988,-602.46	1/1:43:0,43,0:0:0:43,0:1536,0:-136.346,-12.9443,0,-136.346,-12.9443,-136.346	1/1:99:0,99,0:0:0:99,0:3514,0:-312.304,-29.802,0,-312.304,-29.802,-312.304	1/1:147:0,147,0:0:0:147,0:5176,0:-458.204,-44.2514,0,-458.204,-44.2514,-458.204	1/1:75:0,74,0:0:0:74,0:2593,0:-229.046,-22.2762,0,-229.046,-22.2762,-229.046	1/2:186:0,115,71:0:0:115,71:4037,2556:-531.544,-208.857,-174.239,-323.041,0,-301.668	1/1:331:0,330,0:0:0:330,0:11660,0:-1033,-99.3399,0,-1033,-99.3399,-1033	1/2:54:0,28,26:0:0:28,26:994,921:-153.669,-75.3751,-66.9463,-78.6433,0,-70.8165	1/1:221:0,221,0:0:0:221,0:7760,0:-685.639,-66.5276,0,-685.639,-66.5276,-685.639	1/1:97:0,95,1:0:0:95,1:3349,36:-295.755,-28.5979,0,-292.817,-25.6332,-292.516	1/1:101:0,101,0:0:0:101,0:3582,0:-317.592,-30.404,0,-317.592,-30.404,-317.592	1/1:4:0,4,0:0:0:4,0:136,0:-12.4445,-1.20412,0,-12.4445,-1.20412,-12.4445	1/2:16:0,8,8:0:0:8,8:277,288:-45.4238,-23.6669,-21.2587,-22.1033,0,-19.6951	1/1:6:0,6,0:0:0:6,0:216,0:-19.5168,-1.80618,0,-19.5168,-1.80618,-19.5168	1/1:1:0,1,0:0:0:1,0:36,0:-3.54852,-0.30103,0,-3.54852,-0.30103,-3.54852	1/1:7:0,7,0:0:0:7,0:229,0:-20.7234,-2.10721,0,-20.7234,-2.10721,-20.7234	1/1:238:0,238,0:0:0:238,0:8505,0:-752.677,-71.6451,0,-752.677,-71.6451,-752.677	1/1:69:0,69,0:0:0:69,0:2459,0:-216.841,-20.7711,0,-216.841,-20.7711,-216.841	1/2:51:0,23,28:0:0:23,28:822,1008:-148.444,-82.5767,-75.6531,-66.2224,0,-57.7936	1/1:1:0,1,0:0:0:1,0:36,0:-3.54852,-0.30103,0,-3.54852,-0.30103,-3.54852	1/2:83:0,52,31:0:0:52,31:1820,1116:-237.438,-91.3913,-75.7378,-146.401,0,-137.069	1/2:35:0,20,15:0:0:20,15:715,540:-100.399,-44.3926,-38.372,-56.36,0,-51.8446	1/2:137:0,54,82:0:0:54,82:1903,2952:-393.156,-240.893,-224.637,-152.382,0,-127.698	1/2:96:0,52,44:0:0:52,44:1849,1580:-277.377,-129.213,-113.56,-148.518,0,-135.273	1/1:86:0,86,0:0:0:86,0:3027,0:-268.267,-25.8886,0,-268.267,-25.8886,-268.267	1/1:139:0,138,0:0:0:138,0:4881,0:-432.338,-41.5421,0,-432.338,-41.5421,-432.338	1/1:104:0,103,0:0:0:103,0:3617,0:-320.012,-31.0061,0,-320.012,-31.0061,-320.012	1/1:116:0,116,0:0:0:116,0:4088,0:-361.112,-34.9195,0,-361.112,-34.9195,-361.112	1/1:80:0,80,0:0:0:80,0:2822,0:-250.546,-24.0824,0,-250.546,-24.0824,-250.546	1/2:74:0,42,32:0:0:42,32:1467,1152:-211.954,-94.3004,-81.6571,-118.007,0,-108.374	1/1:121:0,121,0:0:0:121,0:4264,0:-378.628,-36.4246,0,-378.628,-36.4246,-378.628	1/1:1:0,1,0:0:0:1,0:36,0:-3.54852,-0.30103,0,-3.54852,-0.30103,-3.54852	1/2:139:0,65,74:0:0:65,74:2283,2656:-400.165,-216.949,-197.382,-183.569,0,-161.293	1/1:58:0,58,0:0:0:58,0:2028,0:-179.787,-17.4597,0,-179.787,-17.4597,-179.787	2/2:9:0,0,9:0:0:0,9:0,324:-29.5059,-29.5059,-29.5059,-2.70927,-2.70927,0	1/2:143:0,66,76:0:0:66,76:2335,2736:-409.006,-223.293,-203.425,-185.755,0,-162.877	1/2:57:0,35,22:0:0:35,22:1226,792:-162.633,-64.983,-54.447,-98.003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chr03	23210302	.	G	A	59845.9	PASS	AB=0.482517;ABP=7.56584;AC=154;AF=0.827957;AN=186;AO=4306;CIGAR=1X;DP=5202;DPB=5202;DPRA=0;EPP=8356.52;EPPR=1762.25;GTI=0;LEN=1;MEANALT=1;MQM=26.8425;MQMR=50.9196;NS=93;NUMALT=1;ODDS=4.14384;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154162;QR=31910;RO=896;RPL=118;RPP=8356.52;RPPR=1762.25;RPR=4188;RUN=1;SAF=0;SAP=9353.37;SAR=4306;SRF=0;SRP=1948.65;SRR=896;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:284:6:216:-8.31934,0,-20.3601	1/1:48:0,48:0:0:48:1720:-99.7289,-14.4494,0	0/1:68:31,37:31:1080:37:1324:-56.3523,0,-76.5489	1/1:130:0,130:0:0:130:4656:-313.468,-39.1339,0	1/1:23:0,23:0:0:23:828:-51.9908,-6.92369,0	1/1:24:0,24:0:0:24:864:-49.1037,-7.22472,0	1/1:51:0,51:0:0:51:1805:-121.403,-15.3525,0	1/1:72:0,72:0:0:72:2588:-149.897,-21.6742,0	1/1:37:0,37:0:0:37:1332:-75.9405,-11.1381,0	0/1:58:21,37:21:743:37:1311:-71.1244,0,-49.3044	1/1:55:0,55:0:0:55:1972:-133.022,-16.5567,0	1/1:45:0,45:0:0:45:1595:-91.7907,-13.5464,0	0/1:68:36,32:36:1287:32:1144:-46.3494,0,-95.0344	1/1:71:0,71:0:0:71:2535:-158.158,-21.3731,0	1/1:48:0,48:0:0:48:1719:-115.924,-14.4494,0	1/1:37:0,37:0:0:37:1328:-83.3747,-11.1381,0	0/1:48:32,16:32:1144:16:572:-18.5668,0,-86.8271	1/1:50:0,50:0:0:50:1788:-104.307,-15.0515,0	0/1:51:32,19:32:1136:19:671:-23.5673,0,-86.3742	1/1:87:0,87:0:0:87:3120:-208.807,-26.1896,0	1/1:94:0,94:0:0:94:3355:-211.847,-28.2968,0	1/1:51:0,51:0:0:51:1828:-130.841,-15.3525,0	1/1:18:1,17:1:36:17:612:-37.716,-1.99494,0	1/1:31:0,31:0:0:31:1112:-68.8763,-9.33193,0	1/1:13:0,13:0:0:13:468:-30.1364,-3.91339,0	0/1:161:90,71:90:3215:71:2552:-134.097,0,-239.579	1/1:86:0,86:0:0:86:3072:-194.833,-25.8886,0	0/1:27:12,15:12:432:15:536:-26.2501,0,-30.9648	1/1:98:0,98:0:0:98:3516:-250.69,-29.5009,0	1/1:88:2,86:2:72:86:3063:-184.35,-19.6763,0	1/1:62:0,62:0:0:62:2224:-150.34,-18.6639,0	0/1:5:4,1:4:144:1:36:-0.773716,0,-11.7648	0/1:10:8,2:8:288:2:72:-2.75162,0,-23.164	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	1/1:6:0,6:0:0:6:216:-12.5338,-1.80618,0	1/1:135:0,135:0:0:135:4841:-343.837,-40.6391,0	1/1:104:0,104:0:0:104:3727:-233.455,-31.3071,0	0/1:59:24,35:24:864:35:1256:-54.2242,0,-59.7148	.:.:.:.:.:.:.:.	0/1:88:53,35:53:1891:35:1260:-51.2938,0,-142.936	0/1:28:12,16:12:410:16:568:-27.9292,0,-28.6611	0/1:68:37,31:37:1311:31:1104:-47.9662,0,-97.1561	0/1:37:21,16:21:747:16:572:-27.0406,0,-56.292	1/1:45:0,45:0:0:45:1608:-107.709,-13.5464,0	1/1:42:0,42:0:0:42:1504:-107.829,-12.6433,0	1/1:72:0,72:0:0:72:2588:-147.525,-21.6742,0	1/1:62:0,62:0:0:62:2213:-148.138,-18.6639,0	1/1:59:0,59:0:0:59:2116:-141.876,-17.7608,0	0/1:108:39,69:39:1396:69:2484:-131.571,0,-93.1941	1/1:81:0,81:0:0:81:2897:-206.037,-24.3834,0	1/1:6:0,6:0:0:6:216:-14.4007,-1.80618,0	0/1:60:36,24:36:1283:24:864:-31.3896,0,-96.77	1/1:30:0,30:0:0:30:1072:-76.6912,-9.0309,0	0/1:7:2,5:2:72:5:172:-8.32015,0,-4.69245	0/1:78:38,40:38:1360:40:1428:-64.9383,0,-98.4071	0/1:8:4,4:4:144:4:144:-7.39158,0,-10.88	1/1:5:0,5:0:0:5:180:-13.692,-1.50515,0	0/1:6:3,3:3:104:3:108:-6.09285,0,-7.88832	1/1:55:0,55:0:0:55:1976:-123.275,-16.5567,0	1/1:115:3,112:3:108:112:4004:-258.756,-24.5625,0	1/1:3:0,3:0:0:3:108:-7.41608,-0.90309,0	1/1:145:1,144:1:36:144:5156:-362.159,-40.0548,0	1/1:104:0,104:0:0:104:3732:-247.352,-31.3071,0	1/1:39:0,39:0:0:39:1400:-86.1309,-11.7402,0	1/1:35:0,35:0:0:35:1251:-82.6448,-10.5361,0	1/1:88:0,88:0:0:88:3133:-214.201,-26.4906,0	0/1:79:50,29:50:1787:29:1028:-46.2252,0,-136.876	1/1:21:0,21:0:0:21:752:-47.9332,-6.32163,0	1/1:53:0,53:0:0:53:1904:-108.729,-15.9546,0	1/1:61:1,60:1:36:60:2160:-149.412,-14.7646,0	1/1:16:0,16:0:0:16:568:-38.9641,-4.81648,0	0/1:37:16,21:16:576:21:743:-31.8471,0,-39.7596	1/1:27:0,27:0:0:27:972:-56.272,-8.12781,0	1/1:72:0,72:0:0:72:2579:-161.261,-21.6742,0	1/1:111:0,111:0:0:111:3977:-269.897,-33.4143,0	0/1:62:30,32:30:1072:32:1140:-47.703,0,-77.5923	0/1:62:31,31:31:1112:31:1116:-45.1444,0,-80.8568	0/1:8:6,2:6:212:2:72:-1.9216,0,-16.7535	1/1:70:0,70:0:0:70:2503:-155.612,-21.0721,0	1/1:69:0,69:0:0:69:2471:-148.422,-20.7711,0	1/1:121:0,121:0:0:121:4320:-289.627,-36.4246,0	1/1:69:0,69:0:0:69:2462:-163.905,-20.7711,0	0/1:51:26,25:26:932:25:896:-45.3031,0,-68.5398	0/1:73:34,39:34:1211:39:1396:-73.691,0,-86.0361	0/1:92:44,48:44:1561:48:1715:-88.4171,0,-111.975	1/1:25:0,25:0:0:25:900:-52.6951,-7.52575,0	1/1:66:0,66:0:0:66:2368:-136.724,-19.868,0	1/1:62:0,62:0:0:62:2232:-129.751,-18.6639,0	0/1:62:32,30:32:1135:30:1072:-50.1507,0,-83.2704	0/1:92:45,47:45:1607:47:1688:-76.8608,0,-115.268	0/1:41:31,10:31:1082:10:356:-11.6984,0,-85.1719	1/1:28:0,28:0:0:28:1008:-69.5839,-8.42884,0	1/1:63:0,63:0:0:63:2260:-151.161,-18.9649,0
chr03	23210315	.	G	A	55808	PASS	AB=0.483159;ABP=7.25236;AC=154;AF=0.827957;AN=186;AO=4333;CIGAR=1X;DP=5232;DPB=5232;DPRA=0;EPP=9377.29;EPPR=1918.4;GTI=0;LEN=1;MEANALT=1.01075;MQM=26.8313;MQMR=50.9265;NS=93;NUMALT=1;ODDS=4.0592;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155321;QR=32172;RO=898;RPL=4329;RPP=9377.29;RPPR=1918.4;RPR=4;RUN=1;SAF=0;SAP=9412;SAR=4333;SRF=0;SRP=1952.99;SRR=898;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:284:6:216:-8.31934,0,-20.3665	1/1:47:0,47:0:0:47:1673:-97.107,-14.1484,0	0/1:72:33,39:33:1175:39:1393:-59.0125,0,-83.8198	1/1:128:0,128:0:0:128:4572:-307.943,-38.5318,0	1/1:24:0,24:0:0:24:864:-55.2339,-7.22472,0	1/1:25:0,25:0:0:25:900:-51.1547,-7.52575,0	1/1:50:0,50:0:0:50:1792:-120.022,-15.0515,0	1/1:72:0,72:0:0:72:2584:-148.693,-21.6742,0	1/1:39:0,39:0:0:39:1396:-81.1757,-11.7402,0	0/1:59:21,38:21:756:38:1368:-73.6154,0,-50.1681	1/1:55:0,55:0:0:55:1976:-133.218,-16.5567,0	1/1:44:0,44:0:0:44:1580:-89.9233,-13.2453,0	0/1:67:36,31:36:1288:31:1107:-44.5421,0,-95.4318	1/1:71:0,71:0:0:71:2556:-158.393,-21.3731,0	1/1:49:0,49:0:0:49:1764:-118.533,-14.7505,0	1/1:37:0,37:0:0:37:1328:-83.3747,-11.1381,0	0/1:48:33,15:33:1180:15:540:-16.5431,0,-90.2259	1/1:50:0,50:0:0:50:1787:-104.423,-15.0515,0	0/1:52:32,20:32:1152:20:716:-25.3926,0,-87.4724	1/1:90:0,90:0:0:90:3236:-216.069,-27.0927,0	1/1:92:1,91:1:36:91:3264:-201.294,-24.3486,0	1/1:54:0,54:0:0:54:1931:-137.483,-16.2556,0	1/1:17:0,17:0:0:17:612:-41.1396,-5.11751,0	1/1:32:0,32:0:0:32:1148:-72.1009,-9.63296,0	1/1:12:0,12:0:0:12:432:-27.9169,-3.61236,0	0/1:166:94,72:94:3357:72:2584:-135.187,0,-251.627	1/1:87:0,87:0:0:87:3112:-197.094,-26.1896,0	0/1:27:12,15:12:432:15:540:-26.2774,0,-30.9648	1/1:104:0,104:0:0:104:3735:-266.003,-31.3071,0	1/1:86:2,84:2:72:84:3012:-180.194,-19.0743,0	1/1:66:0,66:0:0:66:2360:-159.588,-19.868,0	0/1:5:4,1:4:144:1:36:-0.773716,0,-11.7648	0/1:10:8,2:8:288:2:72:-2.75162,0,-23.164	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	1/1:6:0,6:0:0:6:216:-12.5338,-1.80618,0	1/1:139:0,139:0:0:139:4991:-354.069,-41.8432,0	1/1:107:0,107:0:0:107:3848:-240.318,-32.2102,0	0/1:59:24,35:24:860:35:1256:-54.2242,0,-59.3646	.:.:.:.:.:.:.:.	0/1:89:53,36:53:1904:36:1292:-53.1718,0,-143.789	0/1:29:12,17:12:424:17:612:-29.9309,0,-29.627	0/1:64:35,29:35:1260:29:1040:-44.8359,0,-93.7527	0/1:35:20,15:20:720:15:540:-25.3202,0,-54.4687	1/1:47:0,47:0:0:47:1660:-111.731,-14.1484,0	1/1:42:0,42:0:0:42:1512:-108.005,-12.6433,0	1/1:72:0,72:0:0:72:2588:-147.525,-21.6742,0	1/1:61:0,61:0:0:61:2188:-145.976,-18.3628,0	1/1:59:0,59:0:0:59:2116:-141.476,-17.7608,0	0/1:105:39,66:39:1392:66:2360:-125.432,0,-93.7408	1/1:80:0,80:0:0:80:2876:-204.148,-24.0824,0	1/1:6:0,6:0:0:6:216:-14.4007,-1.80618,0	0/1:60:36,24:36:1283:24:864:-31.3896,0,-96.7763	1/1:31:0,31:0:0:31:1112:-79.3556,-9.33193,0	0/1:7:2,5:2:72:5:176:-8.34786,0,-4.69245	0/1:79:36,42:36:1292:42:1508:-69.1523,0,-92.1825	0/1:8:4,4:4:144:4:135:-7.16107,0,-10.88	1/1:5:0,5:0:0:5:180:-13.692,-1.50515,0	0/1:7:4,3:4:144:3:108:-5.79182,0,-11.0874	1/1:53:0,53:0:0:53:1896:-117.755,-15.9546,0	1/1:115:4,111:4:144:111:3975:-253.056,-21.4854,0	1/1:3:0,3:0:0:3:108:-7.41608,-0.90309,0	1/1:143:1,142:1:36:142:5087:-357.842,-39.4527,0	1/1:108:0,108:0:0:108:3876:-256.887,-32.5112,0	1/1:39:0,39:0:0:39:1400:-86.1073,-11.7402,0	1/1:35:0,35:0:0:35:1260:-82.8698,-10.5361,0	1/1:84:0,84:0:0:84:3011:-205.71,-25.2865,0	0/1:81:52,29:52:1859:29:1035:-45.6427,0,-142.59	1/1:21:0,21:0:0:21:756:-47.9745,-6.32163,0	1/1:54:0,54:0:0:54:1932:-110.726,-16.2556,0	1/1:62:1,61:1:36:61:2188:-151.503,-15.0656,0	1/1:16:0,16:0:0:16:568:-38.9841,-4.81648,0	0/1:36:15,21:15:519:21:756:-32.2874,0,-35.0449	1/1:28:0,28:0:0:28:1008:-58.3229,-8.42884,0	1/1:76:0,76:0:0:76:2715:-169.735,-22.8783,0	1/1:110:0,110:0:0:110:3937:-266.734,-33.1133,0	0/1:61:30,31:30:1080:31:1108:-45.2173,0,-78.6036	0/1:61:30,31:30:1076:31:1116:-45.4454,0,-77.9368	0/1:7:5,2:5:180:2:72:-2.22263,0,-14.1637	1/1:71:0,71:0:0:71:2539:-157.832,-21.3731,0	1/1:70:0,70:0:0:70:2499:-150.382,-21.0721,0	1/1:123:0,123:0:0:123:4401:-294.305,-37.0267,0	1/1:67:0,67:0:0:67:2395:-159.301,-20.169,0	0/1:52:26,26:26:936:26:936:-47.4469,0,-68.5994	0/1:73:34,39:34:1224:39:1404:-73.8132,0,-87.1985	0/1:92:44,48:44:1580:48:1724:-88.6419,0,-113.677	1/1:24:0,24:0:0:24:864:-49.4514,-7.22472,0	1/1:66:0,66:0:0:66:2368:-136.724,-19.868,0	1/1:62:0,62:0:0:62:2220:-129.67,-18.6639,0	0/1:62:32,30:32:1143:30:1076:-49.8729,0,-83.9783	0/1:94:44,50:44:1584:50:1788:-84.8935,0,-113.481	0/1:41:31,10:31:1116:10:360:-11.76,0,-88.2232	1/1:28:0,28:0:0:28:995:-68.9982,-8.42884,0	1/1:64:0,64:0:0:64:2296:-153.545,-19.2659,0
chr03	23210331	.	G	A	14322.8	PASS	AB=0.510107;ABP=4.5027;AC=33;AF=0.177419;AN=186;AO=872;CIGAR=1X;DP=5121;DPB=5121;DPRA=1.08921;EPP=1896.53;EPPR=9229.6;GTI=1;LEN=1;MEANALT=1;MQM=50.7064;MQMR=25.9649;NS=93;NUMALT=1;ODDS=3.86567;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31169;QR=151050;RO=4249;RPL=872;RPP=1896.53;RPPR=9229.6;RPR=0;RUN=1;SAF=0;SAP=1896.53;SAR=872;SRF=0;SRP=9229.6;SRR=4249;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:6,7:6:212:7:248:-17.4481,0,-8.59276	0/0:46:46,0:46:1636:0:0:0,-13.8474,-94.3426	0/1:70:38,32:38:1348:32:1144:-81.6193,0,-57.5866	0/0:124:124,0:124:4428:0:0:0,-37.3277,-294.545	0/0:22:22,0:22:780:0:0:0,-6.62266,-48.6234	0/0:25:25,0:25:896:0:0:0,-7.52575,-51.1275	0/0:49:49,0:49:1736:0:0:0,-14.7505,-116.477	0/0:71:71,0:71:2540:0:0:0,-21.3731,-145.392	0/0:38:38,0:38:1348:0:0:0,-11.4391,-77.8556	0/1:58:37,21:37:1320:21:752:-50.1119,0,-70.4921	0/0:53:53,0:53:1888:0:0:0,-15.9546,-125.636	0/0:44:44,0:44:1559:0:0:0,-13.2453,-89.7301	0/1:66:31,35:31:1062:35:1247:-92.0482,0,-43.3348	0/0:72:72,0:72:2551:0:0:0,-21.6742,-159.153	0/0:46:46,0:46:1635:0:0:0,-13.8474,-109.243	0/0:36:36,0:36:1271:0:0:0,-10.8371,-79.848	0/1:49:17,32:17:608:32:1148:-86.638,0,-20.3168	0/0:50:50,0:50:1780:0:0:0,-15.0515,-103.056	0/1:51:19,32:19:684:32:1148:-87.4236,0,-23.6699	0/0:86:86,0:86:3068:0:0:0,-25.8886,-203.601	0/0:90:90,0:90:3200:0:0:0,-27.0927,-199.658	0/0:52:52,0:52:1852:0:0:0,-15.6536,-131.075	0/0:16:16,0:16:568:0:0:0,-4.81648,-38.475	0/0:30:30,0:30:1064:0:0:0,-9.0309,-66.5182	0/0:12:12,0:12:424:0:0:0,-3.61236,-26.8063	0/1:159:70,89:70:2499:89:3188:-238.671,0,-129.727	0/0:84:84,0:84:2988:0:0:0,-25.2865,-186.063	0/1:25:13,12:13:468:12:428:-31.2109,0,-21.5837	0/0:97:97,0:97:3464:0:0:0,-29.1999,-245.172	0/0:87:85,2:85:3015:2:72:0,-19.3753,-182.006	0/0:63:63,0:63:2236:0:0:0,-18.9649,-149.644	0/1:5:1,4:1:32:4:144:-11.7648,0,-0.743597	1/1:9:1,8:1:36:8:284:-23.3539,-0.242365,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-2.24875	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.27887	0/0:6:6,0:6:216:0:0:0,-1.80618,-12.5338	0/0:133:133,0:133:4717:0:0:0,-40.037,-332.923	0/0:105:105,0:105:3740:0:0:0,-31.6081,-232.449	0/1:60:36,24:36:1272:24:864:-59.4138,0,-55.8382	.:.:.:.:.:.:.:.	0/1:86:36,50:36:1264:50:1784:-133.961,0,-53.8002	0/1:27:16,11:16:563:11:383:-26.5388,0,-27.1121	0/1:66:31,35:31:1096:35:1248:-92.0891,0,-48.5093	0/1:37:16,21:16:572:21:756:-57.1036,0,-27.0406	0/0:47:47,0:47:1659:0:0:0,-14.1484,-111.212	0/0:43:43,0:43:1540:0:0:0,-12.9443,-109.67	0/0:71:71,0:71:2528:0:0:0,-21.3731,-145.147	0/0:61:61,0:61:2180:0:0:0,-18.3628,-144.46	0/0:58:58,0:58:2072:0:0:0,-17.4597,-138.114	0/1:108:69,39:69:2460:39:1388:-92.4813,0,-131.205	0/0:78:78,0:78:2780:0:0:0,-23.4803,-197.127	0/0:6:6,0:6:208:0:0:0,-1.80618,-14.2968	0/1:59:24,35:24:852:35:1252:-94.2962,0,-31.6089	0/0:30:30,0:30:1080:0:0:0,-9.0309,-75.4629	0/1:7:5,2:5:176:2:72:-4.69245,0,-8.34786	0/1:79:42,37:42:1488:37:1312:-93.806,0,-68.9777	0/1:8:4,4:4:140:4:140:-10.5148,0,-7.32894	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.438	0/1:7:3,4:3:108:4:144:-11.0874,0,-5.79182	0/0:52:52,0:52:1848:0:0:0,-15.6536,-115.876	0/0:111:108,3:108:3801:3:104:0,-23.7269,-246.301	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.41608	0/0:142:141,1:141:5040:1:36:0,-39.1517,-353.016	0/0:108:108,0:108:3864:0:0:0,-32.5112,-255.902	0/0:39:39,0:39:1384:0:0:0,-11.7402,-85.9424	0/0:35:35,0:35:1252:0:0:0,-10.536,-82.7475	0/0:82:82,0:82:2936:0:0:0,-24.6845,-194.852	0/1:80:28,52:28:996:52:1864:-143.337,0,-42.7436	0/0:20:20,0:20:716:0:0:0,-6.0206,-44.6927	0/0:53:53,0:53:1860:0:0:0,-15.9546,-108.43	0/0:60:60,0:60:2143:0:0:0,-18.0618,-151.834	0/0:15:15,0:15:528:0:0:0,-4.51545,-35.672	0/1:36:21,15:21:748:15:536:-36.5457,0,-32.2329	0/0:27:27,0:27:956:0:0:0,-8.12781,-54.9741	0/0:75:75,0:75:2652:0:0:0,-22.5772,-165.28	0/0:105:105,0:105:3739:0:0:0,-31.6081,-250.371	0/1:60:33,27:33:1163:27:964:-68.5389,0,-50.217	0/1:60:31,29:31:1100:29:1036:-74.6493,0,-45.6376	0/1:7:2,5:2:72:5:180:-14.1637,0,-2.22263	0/0:71:71,0:71:2520:0:0:0,-21.3731,-157.574	0/0:62:62,0:62:2216:0:0:0,-18.6639,-126.933	0/0:122:122,0:122:4328:0:0:0,-36.7257,-289.801	0/0:71:71,0:71:2523:0:0:0,-21.3731,-168.612	0/1:49:24,25:24:852:25:896:-65.907,0,-42.5405	0/1:71:37,34:37:1316:34:1216:-87.0875,0,-66.8456	0/1:90:46,44:46:1628:44:1580:-114.28,0,-82.3965	0/0:25:25,0:25:887:0:0:0,-7.52575,-51.3632	0/0:65:65,0:65:2311:0:0:0,-19.5669,-133.294	0/0:63:63,0:63:2219:0:0:0,-18.9649,-130.243	0/1:59:29,30:29:1032:30:1071:-78.4135,0,-47.2926	0/1:90:48,42:48:1686:42:1504:-106.74,0,-79.9476	0/1:40:11,29:11:392:29:1036:-81.3338,0,-15.2466	0/0:24:24,0:24:864:0:0:0,-7.22472,-57.4746	0/0:63:63,0:63:2251:0:0:0,-18.9649,-150.094
chr03	23253715	.	C	T	272787	PASS	AB=0.489911;ABP=6.29643;AC=154;AF=0.827957;AN=186;AO=9842;CIGAR=1X;DP=11760;DPB=11760;DPRA=0;EPP=21366;EPPR=4161.38;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.893;MQMR=59.9807;NS=93;NUMALT=1;ODDS=3.37776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=349632;QR=67733;RO=1915;RPL=5100;RPP=31.2875;RPPR=32.4029;RPR=4742;RUN=1;SAF=5101;SAP=31.6044;SAR=4741;SRF=1038;SRP=32.4029;SRR=877;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:6,14:6:216:14:485:-37.8996,0,-13.7699	1/1:151:0,151:0:0:151:5352:-481.816,-45.4555,0	0/1:111:61,50:61:2175:50:1779:-126.977,0,-162.602	1/1:278:0,278:0:0:278:9848:-886.033,-83.6863,0	1/1:27:0,27:0:0:27:972:-87.7964,-8.12781,0	1/1:28:0,28:0:0:28:989:-89.3219,-8.42884,0	1/1:116:0,116:0:0:116:4136:-372.422,-34.9195,0	1/1:183:2,181:2:72:181:6403:-569.527,-48.2518,0	1/1:129:0,129:0:0:129:4561:-410.603,-38.8329,0	0/1:179:81,98:81:2871:98:3511:-261.995,0,-204.744	1/1:106:1,105:1:36:105:3729:-332.202,-28.3109,0	1/1:196:0,196:0:0:196:6907:-621.703,-59.0019,0	0/1:240:142,97:142:4960:97:3451:-238.566,0,-374.389	1/1:116:0,116:0:0:116:4080:-367.37,-34.9195,0	1/1:141:0,141:0:0:141:5064:-455.893,-42.4452,0	1/1:106:0,106:0:0:106:3753:-337.968,-31.9092,0	0/1:100:46,54:46:1616:54:1924:-143.334,0,-115.623	1/1:113:0,113:0:0:113:4018:-361.74,-34.0164,0	0/1:73:36,37:36:1269:37:1332:-98.2063,0,-92.5356	1/1:168:0,168:0:0:168:5993:-539.477,-50.573,0	1/1:166:0,166:0:0:166:5893:-530.48,-49.971,0	1/1:54:0,54:0:0:54:1909:-171.891,-16.2556,0	1/1:128:0,128:0:0:128:4553:-409.93,-38.5318,0	1/1:105:2,103:2:72:103:3686:-325.104,-24.7714,0	1/1:60:0,60:0:0:60:2113:-190.437,-18.0618,0	0/1:275:129,146:129:4571:146:5186:-384.097,0,-328.774	1/1:311:0,311:0:0:311:11050:-994.396,-93.6203,0	0/1:74:40,34:40:1408:34:1211:-87.0193,0,-104.741	1/1:262:0,262:0:0:262:9264:-833.729,-78.8699,0	1/1:162:4,158:4:144:158:5616:-492.248,-35.4532,0	1/1:122:0,122:0:0:122:4352:-391.847,-36.7257,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:6:0,6:0:0:6:208:-19.0582,-1.80618,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:408:0,408:0:0:408:14417:-1297.28,-122.82,0	1/1:132:1,131:1:36:131:4659:-415.873,-36.1377,0	0/1:124:51,73:51:1824:73:2608:-197.639,0,-127.113	.:.:.:.:.:.:.:.	0/1:180:94,86:94:3337:86:3079:-223.151,0,-246.361	0/1:74:26,48:26:917:48:1685:-129.655,0,-60.5684	0/1:112:62,50:62:2187:50:1783:-127.029,0,-163.381	0/1:151:76,75:76:2707:75:2688:-196.704,0,-198.418	1/1:133:1,131:1:32:131:4631:-413.807,-36.8016,0	1/1:88:2,86:2:72:86:3075:-270.085,-19.6539,0	1/1:126:0,126:0:0:126:4481:-403.459,-37.9298,0	1/1:161:0,161:0:0:161:5703:-513.388,-48.4658,0	1/1:104:0,104:0:0:104:3695:-332.734,-31.3071,0	0/1:187:96,91:96:3398:91:3208:-232.652,0,-249.741	1/1:145:1,144:1:36:144:5143:-459.354,-40.0511,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:104:56,48:56:1980:48:1712:-123.053,0,-147.165	1/1:75:0,75:0:0:75:2684:-241.8,-22.5773,0	0/1:17:12,5:12:432:5:176:-11.0675,0,-34.1037	0/1:166:66,100:66:2310:100:3514:-266.499,0,-158.188	0/1:56:27,29:27:925:29:1031:-76.2449,0,-66.6991	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:19:3,16:3:108:16:576:-46.4554,0,-4.3556	1/1:95:0,95:0:0:95:3400:-306.212,-28.5979,0	1/1:174:2,172:2:72:172:6109:-543.029,-45.5425,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:295:0,295:0:0:295:10486:-943.166,-88.8039,0	1/1:219:2,217:2:72:217:7739:-689.61,-59.0888,0	1/1:88:0,88:0:0:88:3139:-282.663,-26.4906,0	1/1:70:0,70:0:0:70:2475:-223.003,-21.0721,0	1/1:183:1,182:1:21:182:6440:-577.586,-52.9885,0	0/1:134:91,43:91:3234:43:1544:-98.9151,0,-250.941	1/1:61:0,61:0:0:61:2173:-195.835,-18.3628,0	1/1:89:0,89:0:0:89:3184:-286.781,-26.7917,0	1/1:116:0,116:0:0:116:4103:-369.394,-34.9195,0	1/1:35:0,35:0:0:35:1247:-112.527,-10.5361,0	0/1:118:69,48:69:2442:48:1712:-118.873,0,-184.541	1/1:148:1,147:1:36:147:5217:-466.071,-40.9542,0	1/1:120:0,120:0:0:120:4286:-385.884,-36.1236,0	1/1:255:0,255:0:0:255:9100:-818.896,-76.7627,0	0/1:41:25,16:25:896:16:565:-38.8381,0,-68.6181	0/1:149:74,75:74:2614:75:2675:-196.118,0,-190.655	0/1:13:8,5:8:280:5:180:-12.6387,0,-21.6252	1/1:146:1,145:1:36:145:5126:-457.886,-40.3521,0	1/1:95:0,95:0:0:95:3408:-306.933,-28.5979,0	1/1:256:0,256:0:0:256:9081:-817.262,-77.0637,0	1/1:166:0,166:0:0:166:5875:-528.778,-49.971,0	0/1:157:74,83:74:2588:83:2962:-219.546,0,-185.905	0/1:159:72,87:72:2558:87:3066:-228.301,0,-182.606	0/1:285:153,132:153:5441:132:4699:-337.276,0,-404.025	1/1:68:0,68:0:0:68:2394:-215.714,-20.47,0	1/1:144:0,144:0:0:144:5086:-457.89,-43.3483,0	1/1:136:0,136:0:0:136:4828:-434.663,-40.9401,0	0/1:82:36,46:36:1275:46:1622:-121.583,0,-90.3678	0/1:145:71,74:71:2518:74:2629:-193.2,0,-183.218	0/1:160:108,52:108:3831:52:1860:-119.508,0,-296.825	1/1:206:0,206:0:0:206:7352:-661.703,-62.0122,0	1/1:239:0,239:0:0:239:8494:-764.371,-71.9462,0
chr03	23291192	.	A	G	17478.8	PASS	AB=0.475208;ABP=15.1768;AC=32;AF=0.173913;AN=184;AO=1093;CIGAR=1X;DP=8102;DPB=8102;DPRA=0.923829;EPP=2376.43;EPPR=15099.3;GTI=2;LEN=1;MEANALT=1.10526;MQM=60;MQMR=59.9906;NS=92;NUMALT=1;ODDS=3.73052;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38897;QR=250670;RO=7004;RPL=0;RPP=2376.43;RPPR=15099.3;RPR=1093;RUN=1;SAF=1093;SAP=2376.43;SAR=0;SRF=7004;SRP=15212;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:20,13:20:705:13:468:-32.5257,0,-53.8388	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:157:94,62:94:3357:62:2191:-150.132,0,-255.025	0/0:208:208,0:208:7461:0:0:0,-62.6142,-671.53	0/0:126:126,0:126:4493:0:0:0,-37.9298,-404.312	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.776	0/0:162:162,0:162:5770:0:0:0,-48.7669,-519.414	0/0:141:141,0:141:5033:0:0:0,-42.4452,-453.116	0/1:134:63,71:63:2245:71:2539:-188.423,0,-161.974	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:108:108,0:108:3884:0:0:0,-32.5112,-349.753	0/1:78:33,45:33:1188:45:1609:-121.619,0,-83.7483	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:26:16,10:16:576:10:356:-24.5545,0,-44.3482	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/0:197:196,1:196:7014:1:36:0,-55.7046,-627.721	0/0:168:168,0:168:6044:0:0:0,-50.573,-543.69	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.889	0/0:141:141,0:141:5060:0:0:0,-42.4452,-455.544	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:114:114,0:114:4055:0:0:0,-34.3174,-365.134	0/1:160:87,73:87:3120:73:2598:-185.903,0,-232.861	0/0:113:113,0:113:4045:0:0:0,-34.0164,-364.236	0/1:34:17,17:17:612:17:600:-44.0942,0,-45.1784	0/0:178:178,0:178:6380:0:0:0,-53.5833,-574.288	0/0:133:129,4:129:4621:4:129:0,-28.1093,-404.123	0/0:118:118,0:118:4205:0:0:0,-35.5215,-378.631	0/1:6:4,2:4:144:2:57:-3.60713,0,-11.5074	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:131:130,1:130:4664:1:36:0,-35.8367,-416.322	0/0:115:115,0:115:4094:0:0:0,-34.6184,-368.644	0/1:37:15,22:15:540:22:765:-58.0296,0,-37.7984	.:.:.:.:.:.:.:.	0/1:120:75,45:75:2669:45:1612:-109.246,0,-204.331	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/1:203:108,95:108:3861:95:3365:-241.956,0,-286.575	0/1:53:29,24:29:1044:24:860:-61.7672,0,-78.3202	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:115:115,0:115:4094:0:0:0,-34.6184,-368.644	0/0:121:121,0:121:4299:0:0:0,-36.4246,-387.085	0/0:142:142,0:142:5058:0:0:0,-42.7463,-455.336	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/1:87:47,40:47:1665:40:1433:-103.078,0,-123.946	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.892	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:102:55,46:55:1976:46:1652:-118.205,0,-147.351	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:114:58,56:58:2057:56:1996:-145.597,0,-151.082	0/1:81:33,48:33:1188:48:1698:-128.719,0,-82.8452	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:75:74,0:74:2660:0:0:0,-22.2762,-239.286	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:99:99,0:99:3545:0:0:0,-29.802,-319.257	0/0:171:171,0:171:6106:0:0:0,-51.4761,-549.639	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.72	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.72	0/0:185:184,1:184:6597:1:36:0,-52.0923,-590.209	0/1:109:41,68:41:1468:68:2414:-184.701,0,-99.6038	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:17:16,1:16:576:1:32:0,-1.9182,-48.9757	0/1:58:24,34:24:860:34:1193:-90.2115,0,-60.2621	0/0:97:97,0:97:3469:0:0:0,-29.1999,-312.42	0/0:250:248,2:248:8832:2:72:0,-68.4208,-788.029	0/0:120:120,0:120:4267:0:0:0,-36.1236,-384.205	0/1:137:74,62:74:2641:62:2209:-157.773,0,-196.635	0/1:102:61,41:61:2181:41:1472:-102.071,0,-165.849	0/1:19:11,8:11:381:8:288:-20.5478,0,-28.9011	0/0:113:113,0:113:4045:0:0:0,-34.0164,-364.236	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.03	0/0:213:213,0:213:7648:0:0:0,-64.1194,-688.353	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:56:37,19:37:1332:19:680:-44.6715,0,-103.325	0/1:47:25,22:25:900:22:784:-56.7355,0,-67.1726	0/1:103:59,44:59:2120:44:1580:-111.485,0,-160.062	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:30:16,14:16:576:14:493:-35.6708,0,-43.1441	0/1:82:46,35:46:1652:35:1240:-87.1608,0,-124.225	0/1:49:16,33:16:576:33:1188:-92.4781,0,-37.4245	0/0:137:137,0:137:4870:0:0:0,-41.2411,-438.453	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82
chr03	23323094	.	TGAA	CGAG,CGAA	335968	PASS	AB=0.551735,0.443439;ABP=80.0756,95.1259;AC=158,30;AF=0.840426,0.159574;AN=188;AO=10932,1495;CIGAR=1X2M1X,1X3M;DP=12495;DPB=12497;DPRA=0,1.00028;EPP=23741.5,3249.36;EPPR=5.18177;GTI=1;LEN=4,1;MEANALT=2.04255,2.63158;MQM=59.9783,60;MQMR=60;NS=94;NUMALT=2;ODDS=3.51159;PAIRED=0,0;PAIREDR=0;PAO=4.5,3;PQA=138.5,79.5;PQR=0;PRO=0.5;QA=376019,52134;QR=33;RO=1;RPL=5961,807;RPP=197.692,23.579;RPPR=5.18177;RPR=4971,688;RUN=1,1;SAF=5961,807;SAP=197.692,23.579;SAR=4971,688;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:58:0,31,27:0:0:31,27:1015,944:-159.119,-77.1435,-67.8116,-82.3146,0,-74.1868	1/1:148:0,148,0:0:0:148,0:5155,0:-464.106,-44.5524,0,-464.106,-44.5524,-464.106	1/2:164:0,109,55:0:0:109,55:3719,1930:-459.181,-157.419,-124.607,-302.11,0,-285.553	1/1:281:0,279,1:0:0:279,1:9574,36:-861.36,-83.9874,0,-858.423,-80.99,-858.122	1/1:109:0,109,0:0:0:109,0:3710,0:-334.112,-32.8123,0,-334.112,-32.8123,-334.112	1/1:31:0,30,0:0:0:30,0:1040,0:-93.5508,-9.0309,0,-93.5508,-9.0309,-93.5508	1/1:125:0,124,0:0:0:124,0:4293,0:-386.263,-37.3277,0,-386.263,-37.3277,-386.263	1/1:271:0,268,0:0:0:268,0:9270,0:-834.009,-80.676,0,-834.009,-80.676,-834.009	1/1:125:0,124,0:0:0:124,0:4182,0:-376.158,-37.3277,0,-376.158,-37.3277,-376.158	1/2:120:0,62,58:0:0:62,58:2138,2050:-340.985,-167.311,-148.647,-174.023,0,-156.563	1/1:127:0,126,0:0:0:126,0:4322,0:-388.811,-37.9298,0,-388.811,-37.9298,-388.811	1/1:153:0,153,0:0:0:153,0:5197,0:-467.897,-46.0576,0,-467.897,-46.0576,-467.897	1/1:144:0,144,0:0:0:144,0:4931,0:-443.958,-43.3483,0,-443.958,-43.3483,-443.958	1/1:105:0,102,0:0:0:102,0:3495,0:-314.472,-30.7051,0,-314.472,-30.7051,-314.472	1/1:119:0,118,0:0:0:118,0:4078,0:-366.86,-35.5215,0,-366.86,-35.5215,-366.86	1/1:105:0,104,0:0:0:104,0:3578,0:-321.969,-31.3071,0,-321.969,-31.3071,-321.969	1/2:84:0,42,41:0:0:42,41:1435,1399:-230.106,-113.646,-101.003,-116.586,0,-104.244	1/1:88:0,88,0:0:0:88,0:3044,0:-274.191,-26.4906,0,-274.191,-26.4906,-274.191	1/2:58:0,40,18:0:0:40,18:1374,622:-162.452,-50.8835,-38.8423,-111.913,0,-106.495	1/1:206:0,206,0:0:0:206,0:7138,0:-642.504,-62.0122,0,-642.504,-62.0122,-642.504	1/1:171:0,170,0:0:0:170,0:5913,0:-531.937,-51.1751,0,-531.937,-51.1751,-531.937	1/1:111:0,111,0:0:0:111,0:3754,0:-338.071,-33.4143,0,-338.071,-33.4143,-338.071	1/1:186:0,177,6:0:0:177,6:6089,203:-547.809,-53.2823,0,-531.352,-36.7978,-529.546	1/1:118:0,118,0:0:0:118,0:4101,0:-369.286,-35.5215,0,-369.286,-35.5215,-369.286	1/1:122:0,120,0:0:0:120,0:4105,0:-369.324,-36.1236,0,-369.324,-36.1236,-369.324	1/2:320:0,194,125:0:0:194,125:6737,4380:-904.062,-356.385,-297.986,-547.666,0,-510.037	1/1:339:0,336,1:0:0:336,1:11600,36:-1043.63,-101.146,0,-1040.69,-98.1754,-1040.39	1/2:51:0,41,10:0:0:41,10:1426,352:-144.95,-29.0079,-16.6657,-116.293,0,-113.283	1/1:320:0,315,0:0:0:315,0:10935,0:-983.74,-94.8245,0,-983.74,-94.8245,-983.74	1/1:166:0,160,6:0:0:160,6:5521,216:-496.657,-48.1648,0,-479.032,-30.2306,-477.226	1/1:150:0,150,0:0:0:150,0:5187,0:-466.99,-45.1545,0,-466.99,-45.1545,-466.99	1/2:4:0,2,2:0:0:2,2:71,72:-12.0173,-6.23466,-5.6326,-6.14,0,-5.53794	1/2:10:0,5,5:0:0:5,5:177,172:-28.7358,-14.3128,-12.8077,-14.7718,0,-13.2667	1/1:8:0,8,0:0:0:8,0:277,0:-25.2661,-2.40824,0,-25.2661,-2.40824,-25.2661	1/1:8:0,8,0:0:0:8,0:272,0:-24.8107,-2.40824,0,-24.8107,-2.40824,-24.8107	1/1:4:0,4,0:0:0:4,0:141,0:-13.0371,-1.20412,0,-13.0371,-1.20412,-13.0371	1/1:405:0,403,0:0:0:403,0:13806,0:-1242.12,-121.315,0,-1242.12,-121.315,-1242.12	1/1:170:0,169,0:0:0:169,0:5883,0:-529.23,-50.8741,0,-529.23,-50.8741,-529.23	1/2:110:0,61,48:0:0:61,48:2092,1661:-304.898,-135.054,-116.691,-169.917,0,-155.467	1/1:6:0,6,0:0:0:6,0:206,0:-18.876,-1.80618,0,-18.876,-1.80618,-18.876	1/2:170:0,96,70:0:0:96,70:3363,2454:-473.329,-199.685,-170.786,-273.637,0,-252.565	1/2:49:0,24,24:0:0:24,24:837,856:-137.956,-69.8821,-62.6574,-68.1699,0,-60.9452	1/2:233:0,131,102:0:0:131,102:4473,3527:-649.914,-286.94,-247.505,-363.318,0,-332.613	1/2:105:0,67,37:0:0:67,37:2337,1281:-294.167,-104.091,-83.9217,-190.064,0,-178.926	1/1:96:0,95,0:0:0:95,0:3228,0:-290.51,-28.5979,0,-290.51,-28.5979,-290.51	1/1:91:0,91,0:0:0:91,0:3114,0:-280.496,-27.3937,0,-280.496,-27.3937,-280.496	1/1:187:0,186,0:0:0:186,0:6417,0:-577.221,-55.9916,0,-577.221,-55.9916,-577.221	1/1:219:0,216,1:0:0:216,1:7459,21:-671.097,-65.0225,0,-669.509,-63.4719,-669.208	1/1:175:0,175,0:0:0:175,0:6047,0:-544.353,-52.6803,0,-544.353,-52.6803,-544.353	1/2:180:0,83,97:0:0:83,97:2887,3436:-514.989,-280.257,-255.271,-235.083,0,-205.883	1/1:114:0,114,0:0:0:114,0:3932,0:-354.084,-34.3174,0,-354.084,-34.3174,-354.084	1/1:3:0,3,0:0:0:3,0:105,0:-9.79609,-0.90309,0,-9.79609,-0.90309,-9.79609	1/2:204:0,102,102:0:0:102,102:3494,3590:-576.232,-292.606,-261.901,-283.973,0,-253.268	1/1:83:0,83,0:0:0:83,0:2839,0:-255.752,-24.9855,0,-255.752,-24.9855,-255.752	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/2:130:0,55,74:0:0:55,74:1845,2563:-357.797,-208.372,-191.816,-149.493,0,-127.216	1/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chr03	23361943	.	A	G	24696.6	PASS	AB=0.595433;ABP=186.616;AC=30;AF=0.16129;AN=186;AO=1409;CIGAR=1X;DP=7491;DPB=7491;DPRA=1.18514;EPP=3027.97;EPPR=12995.8;GTI=2;LEN=1;MEANALT=1.04545;MQM=59.9808;MQMR=59.978;NS=93;NUMALT=1;ODDS=0.401591;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50291;QR=206577;RO=6079;RPL=4;RPP=3027.97;RPPR=12995.8;RPR=1405;RUN=1;SAF=1409;SAP=3062.61;SAR=0;SRF=6079;SRP=13203.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	0/0:144:144,0:144:4931:0:0:0,-43.3483,-443.897	0/1:71:31,40:31:1016:40:1410:-105.823,0,-70.3617	0/0:151:150,1:150:5102:1:32:0,-42.2562,-456.051	0/0:46:46,0:46:1589:0:0:0,-13.8474,-143.298	0/0:74:74,0:74:2526:0:0:0,-22.2762,-227.096	0/0:129:127,2:127:4257:2:72:0,-31.9961,-376.479	0/0:179:178,0:178:6242:0:0:0,-53.5833,-561.529	0/0:124:123,1:123:4286:1:36:0,-33.7294,-382.328	0/1:137:53,84:53:1826:84:3007:-229.62,0,-123.375	0/0:45:45,0:45:1579:0:0:0,-13.5463,-142.397	0/0:44:44,0:44:1464:0:0:0,-13.2453,-132.044	0/0:69:69,0:69:2377:0:0:0,-20.7711,-214.19	0/0:52:52,0:52:1816:0:0:0,-15.6536,-163.721	0/0:43:43,0:43:1435:0:0:0,-12.9443,-129.437	0/0:39:39,0:39:1352:0:0:0,-11.7402,-121.978	0/1:71:33,38:33:1152:38:1360:-101.327,0,-82.613	0/0:58:58,0:58:1977:0:0:0,-17.4597,-178.205	0/1:24:8,16:8:272:16:572:-44.5887,0,-17.5865	0/0:150:149,1:149:5044:1:32:0,-41.9552,-450.918	0/0:104:104,0:104:3630:0:0:0,-31.3071,-326.907	0/0:61:61,0:61:1949:0:0:0,-18.3628,-175.666	0/0:38:38,0:38:1291:0:0:0,-11.4391,-116.483	0/0:139:139,0:139:4815:0:0:0,-41.8432,-433.511	0/0:53:53,0:53:1724:0:0:0,-15.9546,-155.43	0/1:259:107,152:107:3722:152:5422:-410.144,0,-257.221	0/0:148:148,0:148:4829:0:0:0,-44.5524,-434.781	0/1:50:15,35:15:513:35:1256:-98.2938,0,-31.4414	0/0:133:132,1:132:4235:1:36:0,-36.4387,-377.742	0/0:140:133,7:133:4586:7:252:0,-19.1152,-389.884	0/0:78:78,0:78:2698:0:0:0,-23.4803,-243.061	0/1:5:1,4:1:32:4:144:-11.8085,0,-1.69416	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:117:117,0:117:3922:0:0:0,-35.2205,-353.186	0/0:146:146,0:146:4905:0:0:0,-43.9504,-440.985	0/1:46:16,30:16:537:30:1074:-83.125,0,-34.8004	.:.:.:.:.:.:.:.	0/1:281:121,159:121:4089:159:5688:-427.391,0,-283.556	0/1:21:12,9:12:400:9:324:-23.1842,0,-30.0004	0/1:108:41,67:41:1358:67:2389:-182.755,0,-89.9918	0/1:61:24,37:24:844:37:1328:-101.459,0,-57.9137	0/0:50:49,1:49:1624:1:32:0,-11.8522,-143.241	0/0:67:66,1:66:2267:1:36:0,-16.5707,-200.692	0/0:84:84,0:84:2861:0:0:0,-25.2865,-257.728	0/0:175:175,0:175:5873:0:0:0,-52.6802,-528.697	0/0:104:103,1:103:3401:1:32:0,-28.1078,-303.106	0/1:140:48,92:48:1620:92:3277:-253.006,0,-103.936	0/0:149:149,0:149:5109:0:0:0,-44.8535,-459.963	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/1:137:55,82:55:1773:82:2926:-222.333,0,-118.596	0/0:26:25,1:25:857:1:36:0,-4.2285,-73.8436	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:129:42,87:42:1415:87:3111:-241.383,0,-88.8054	0/1:45:22,23:22:760:23:820:-60.5394,0,-55.1723	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/0:52:52,0:52:1786:0:0:0,-15.6536,-161.019	0/0:81:81,0:81:2803:0:0:0,-24.3834,-252.511	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:138:138,0:138:4500:0:0:0,-41.5421,-405.181	0/0:168:163,5:163:5570:5:180:0,-34.021,-484.883	0/0:76:76,0:76:2621:0:0:0,-22.8783,-236.134	0/0:77:77,0:77:2560:0:0:0,-23.1793,-230.646	0/0:73:70,2:70:2391:2:72:0,-15.1973,-208.61	0/1:67:19,48:19:634:48:1723:-135.187,0,-37.2027	0/0:17:17,0:17:561:0:0:0,-5.11751,-50.8034	0/0:52:52,0:52:1790:0:0:0,-15.6536,-161.379	0/0:61:61,0:61:2101:0:0:0,-18.3628,-189.36	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/1:107:56,51:56:1898:51:1819:-131.78,0,-138.885	0/0:80:80,0:80:2721:0:0:0,-24.0824,-245.133	0/0:136:136,0:136:4805:0:0:0,-40.9401,-432.611	0/0:116:115,1:115:3744:1:36:0,-31.3212,-333.569	0/1:72:33,39:33:1113:39:1404:-104.985,0,-78.7973	0/0:110:108,2:108:3731:2:63:0,-27.1301,-330.007	0/1:7:3,4:3:100:4:144:-11.2064,0,-7.22323	0/1:133:54,79:54:1817:79:2825:-214.45,0,-123.765	0/0:81:81,0:81:2746:0:0:0,-24.3834,-247.381	0/0:170:170,0:170:5738:0:0:0,-51.1751,-516.56	0/0:84:84,0:84:2868:0:0:0,-25.2865,-258.365	0/1:51:15,36:15:512:36:1274:-99.6094,0,-31.0519	0/1:85:37,48:37:1296:48:1728:-130.218,0,-91.3535	0/0:117:117,0:117:4005:0:0:0,-35.2205,-360.651	0/0:45:45,0:45:1568:0:0:0,-13.5463,-141.411	0/0:54:54,0:54:1861:0:0:0,-16.2556,-167.768	0/0:39:39,0:39:1352:0:0:0,-11.7402,-121.978	0/1:38:14,24:14:484:24:847:-65.1096,0,-32.4494	0/1:63:31,32:31:1085:32:1139:-83.8535,0,-78.9921	0/1:73:22,51:22:748:51:1793:-139.676,0,-45.658	0/0:57:57,0:57:1895:0:0:0,-17.1587,-170.816	0/0:79:79,0:79:2719:0:0:0,-23.7814,-244.955
chr03	23361955	.	G	T	192698	PASS	AB=0.463121;ABP=33.4413;AC=156;AF=0.83871;AN=186;AO=7564;CIGAR=1X;DP=8966;DPB=8966;DPRA=0;EPP=8355.67;EPPR=1842.25;GTI=0;LEN=1;MEANALT=1.07527;MQM=59.9699;MQMR=59.9993;NS=93;NUMALT=1;ODDS=0.537502;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=269443;QR=49807;RO=1395;RPL=6479;RPP=8355.67;RPPR=1842.25;RPR=1085;RUN=1;SAF=7564;SAP=16428;SAR=0;SRF=1395;SRP=3032.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:7,15:7:252:15:540:-42.3139,0,-16.4063	1/1:170:0,170:0:0:170:6075:-546.724,-51.1751,0	0/1:79:40,39:40:1436:39:1392:-101.798,0,-105.756	1/1:181:0,181:0:0:181:6438:-579.506,-54.4864,0	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	1/1:78:0,78:0:0:78:2784:-250.024,-23.4803,0	1/1:154:0,154:0:0:154:5492:-494.407,-46.3586,0	1/1:205:0,204:0:0:204:7308:-657.45,-61.4101,0	1/1:139:0,139:0:0:139:4968:-447.27,-41.8432,0	0/1:143:83,60:83:2972:60:2152:-150.898,0,-224.665	1/1:60:0,60:0:0:60:2144:-193.225,-18.0618,0	1/1:68:1,67:1:36:67:2379:-210.768,-16.8718,0	1/1:103:0,103:0:0:103:3651:-328.567,-31.0061,0	1/1:56:0,55:0:0:55:1968:-177.035,-16.5567,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:58:0,58:0:0:58:2054:-185.13,-17.4597,0	0/1:75:38,37:38:1355:37:1328:-97.245,0,-99.6725	1/1:79:0,79:0:0:79:2806:-252.78,-23.7814,0	0/1:34:16,18:16:572:18:644:-48.0556,0,-41.5784	1/1:182:0,182:0:0:182:6478:-583.106,-54.7875,0	1/1:115:0,115:0:0:115:4080:-367.388,-34.6185,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:42:0,42:0:0:42:1486:-134.034,-12.6433,0	1/1:154:0,154:0:0:154:5492:-494.407,-46.3586,0	1/1:72:0,72:0:0:72:2560:-230.651,-21.6742,0	0/1:280:148,132:148:5277:132:4719:-340.581,0,-390.778	1/1:228:0,228:0:0:228:8088:-727.943,-68.6348,0	0/1:58:34,24:34:1216:24:864:-60.6228,0,-92.2868	1/1:179:0,179:0:0:179:6347:-571.326,-53.8844,0	1/1:171:7,164:7:252:164:5829:-501.696,-28.4472,0	1/1:86:0,86:0:0:86:3071:-276.616,-25.8886,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:177:0,177:0:0:177:6299:-567.007,-53.2823,0	1/1:179:0,179:0:0:179:6341:-569.85,-53.8844,0	0/1:50:30,20:30:1072:20:712:-49.3552,0,-81.741	.:.:.:.:.:.:.:.	0/1:307:159,148:159:5673:148:5288:-383.64,0,-418.273	0/1:26:9,17:9:324:17:588:-45.4154,0,-21.6791	0/1:116:66,50:66:2351:50:1777:-125.291,0,-176.929	0/1:73:38,35:38:1368:35:1251:-90.9167,0,-101.446	1/1:71:0,71:0:0:71:2509:-225.974,-21.3731,0	1/1:76:0,76:0:0:76:2711:-244.234,-22.8783,0	1/1:104:0,104:0:0:104:3690:-332.304,-31.3071,0	1/1:224:0,223:0:0:223:7974:-717.323,-67.1297,0	1/1:129:0,129:0:0:129:4611:-415.154,-38.8329,0	0/1:149:92,56:92:3300:56:1989:-134.37,0,-252.306	1/1:199:0,198:0:0:198:7073:-636.27,-59.6039,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:161:81,80:81:2899:80:2843:-207.644,0,-212.679	1/1:32:1,31:1:36:31:1104:-96.0724,-6.03469,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:143:88,54:88:3133:54:1911:-129.161,0,-239.089	0/1:48:22,26:22:779:26:932:-69.7494,0,-55.9826	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:14:4,10:4:140:10:343:-26.9861,0,-8.73016	1/1:58:0,58:0:0:58:2046:-184.408,-17.4597,0	1/1:103:0,103:0:0:103:3689:-332.211,-31.0061,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:159:0,159:0:0:159:5636:-507.361,-47.8638,0	1/1:180:0,180:0:0:180:6463:-581.753,-54.1854,0	1/1:84:0,84:0:0:84:2990:-269.332,-25.2865,0	1/1:92:0,92:0:0:92:3267:-294.253,-27.6948,0	1/1:87:2,85:2:72:85:3028:-265.914,-19.3529,0	0/1:69:49,20:49:1738:20:712:-43.6356,0,-135.932	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:64:0,64:0:0:64:2269:-204.472,-19.2659,0	1/1:90:0,90:0:0:90:3220:-290.023,-27.0927,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:117:53,64:53:1861:64:2256:-168.081,0,-132.547	1/1:88:0,88:0:0:88:3115:-280.576,-26.4906,0	1/1:156:0,156:0:0:156:5559:-500.434,-46.9607,0	1/1:154:1,153:1:36:153:5480:-489.729,-42.7603,0	0/1:83:38,45:38:1368:45:1597:-119.034,0,-98.4353	1/1:133:2,131:2:72:131:4686:-415.055,-33.2003,0	0/1:8:4,4:4:136:4:144:-10.9054,0,-10.1673	0/1:150:80,70:80:2876:70:2496:-179.739,0,-213.922	1/1:102:0,102:0:0:102:3641:-327.895,-30.7051,0	1/1:188:0,188:0:0:188:6711:-604.066,-56.5936,0	1/1:108:0,108:0:0:108:3838:-345.618,-32.5112,0	0/1:61:35,26:35:1256:26:914:-64.2112,0,-94.9825	0/1:106:48,58:48:1720:58:2058:-153.582,0,-123.176	1/1:131:0,130:0:0:130:4615:-415.155,-39.1339,0	1/1:59:0,59:0:0:59:2075:-187.018,-17.7608,0	1/1:76:0,76:0:0:76:2714:-244.504,-22.8783,0	1/1:58:0,58:0:0:58:2057:-185.4,-17.4597,0	0/1:40:24,16:24:860:16:576:-40.1338,0,-65.6806	0/1:70:34,36:34:1205:36:1283:-94.5103,0,-87.6818	0/1:78:53,25:53:1880:25:888:-56.7587,0,-145.996	1/1:72:0,72:0:0:72:2568:-231.37,-21.6742,0	1/1:107:0,107:0:0:107:3814:-343.458,-32.2102,0
chr03	23370237	.	T	C	178804	PASS	AB=0.506564;ABP=3.9795;AC=158;AF=0.840426;AN=188;AO=8076;CIGAR=1X;DP=9379;DPB=9379;DPRA=100.839;EPP=17479.1;EPPR=2819.41;GTI=2;LEN=1;MEANALT=1.06452;MQM=59.9789;MQMR=59.8836;NS=94;NUMALT=1;ODDS=1.18842;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288765;QR=46532;RO=1297;RPL=8069;RPP=17479.1;RPPR=2819.41;RPR=7;RUN=1;SAF=8076;SAP=17539.8;SAR=0;SRF=1297;SRP=2819.41;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:102:4,98:4:144:98:3494:-301.354,-17.3914,0	0/1:113:52,60:52:1860:60:2148:-159.512,0,-133.603	1/1:231:0,231:0:0:231:8300:-747.002,-69.5379,0	1/1:67:0,67:0:0:67:2399:-216.166,-20.169,0	1/1:71:0,71:0:0:71:2526:-227.32,-21.3731,0	1/1:137:0,137:0:0:137:4911:-442.14,-41.2411,0	1/1:200:0,200:0:0:200:7178:-646.067,-60.206,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:115:78,37:78:2796:37:1332:-85.5639,0,-217.217	1/1:42:1,41:1:36:41:1472:-129.178,-9.04499,0	1/1:55:0,55:0:0:55:1956:-176.313,-16.5567,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/1:76:36,40:36:1288:40:1432:-106.299,0,-93.3453	1/1:59:0,59:0:0:59:2107:-189.899,-17.7608,0	0/1:33:20,13:20:720:13:468:-32.5257,0,-55.1948	1/1:287:0,287:0:0:287:10270:-924.223,-86.3956,0	1/1:161:1,160:1:36:160:5736:-512.756,-44.8676,0	1/1:107:0,107:0:0:107:3831:-344.986,-32.2102,0	1/1:54:0,54:0:0:54:1913:-172.445,-16.2556,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:125:0,124:0:0:124:4434:-399.008,-37.3277,0	0/1:384:175,209:175:6277:209:7454:-555.294,0,-449.423	1/1:176:0,176:0:0:176:6277:-565.017,-52.9813,0	0/1:36:15,21:15:525:21:743:-56.3563,0,-36.741	1/1:275:1,274:1:36:274:9852:-883.019,-79.185,0	1/1:216:5,211:5:180:211:7538:-661.906,-48.4704,0	1/1:89:0,89:0:0:89:3183:-286.693,-26.7917,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:128:0,128:0:0:128:4595:-413.712,-38.5318,0	1/1:216:1,215:1:36:215:7690:-688.536,-61.4242,0	0/1:47:24,23:24:860:23:801:-58.2578,0,-63.5685	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:208:100,108:100:3596:108:3845:-283.631,0,-261.231	0/1:25:14,11:14:496:11:396:-28.457,0,-37.4485	0/1:123:61,61:61:2188:61:2181:-159.469,0,-160.099	0/1:61:27,34:27:963:34:1194:-89.3984,0,-68.4312	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:87:0,86:0:0:86:3084:-277.428,-25.8886,0	1/1:166:0,166:0:0:166:5940:-534.706,-49.971,0	1/1:148:0,148:0:0:148:5277:-475.066,-44.5524,0	1/1:134:0,134:0:0:134:4791:-431.346,-40.338,0	0/1:161:84,77:84:3024:77:2772:-201.254,0,-223.924	1/1:118:0,118:0:0:118:4240:-381.778,-35.5215,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:172:67,105:67:2412:105:3750:-285.919,0,-165.548	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.887295	0/1:127:66,61:66:2364:61:2186:-158.775,0,-174.742	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06141	1/1:85:0,85:0:0:85:3033:-273.199,-25.5876,0	1/1:109:1,108:1:36:108:3867:-344.626,-29.214,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:284:0,283:0:0:283:10094:-908.032,-85.1915,0	1/1:237:1,236:1:36:236:8460:-757.8,-67.7458,0	1/1:69:0,69:0:0:69:2469:-222.463,-20.7711,0	1/1:97:0,97:0:0:97:3475:-312.961,-29.1999,0	1/1:153:0,153:0:0:153:5473:-492.696,-46.0576,0	0/1:140:88,52:88:3164:52:1868:-126.255,0,-242.832	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:89:1,88:1:36:88:3128:-278.146,-23.1934,0	1/1:93:1,92:1:36:92:3285:-292.271,-24.3975,0	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	0/1:142:71,71:71:2552:71:2540:-186.102,0,-187.184	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:235:0,235:0:0:235:8428:-758.521,-70.7421,0	1/1:182:1,181:1:36:181:6455:-577.438,-51.1892,0	0/1:150:58,92:58:2084:92:3277:-249.995,0,-142.674	1/1:121:2,119:2:72:119:4261:-376.83,-29.5879,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:153:78,75:78:2783:75:2684:-195.747,0,-204.653	1/1:142:0,141:0:0:141:5060:-455.223,-42.4452,0	1/1:323:0,323:0:0:323:11525:-1037.12,-97.2327,0	1/1:75:0,75:0:0:75:2675:-240.995,-22.5773,0	0/1:60:30,30:30:1080:30:1072:-78.7307,0,-79.4484	0/1:69:35,34:35:1260:34:1211:-88.5244,0,-92.9313	1/1:107:0,107:0:0:107:3778:-340.13,-32.2102,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:64:0,64:0:0:64:2279:-205.372,-19.2659,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	0/1:53:27,26:27:968:26:912:-66.4399,0,-71.4828	0/1:54:33,21:33:1184:21:756:-52.1116,0,-90.34	1/1:115:0,115:0:0:115:4088:-368.107,-34.6185,0	1/1:81:0,81:0:0:81:2889:-260.245,-24.3834,0
chr03	23387242	.	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chr03	23489170	.	G	C	22820.2	PASS	AB=0.533719;ABP=28.637;AC=29;AF=0.154255;AN=188;AO=1396;CIGAR=1X;DP=8471;DPB=8471;DPRA=1.13904;EPP=3025.71;EPPR=15353.1;GTI=0;LEN=1;MEANALT=1.05263;MQM=59.942;MQMR=59.9949;NS=94;NUMALT=1;ODDS=4.59594;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48800;QR=249110;RO=7069;RPL=1396;RPP=3034.39;RPPR=15335.8;RPR=0;RUN=1;SAF=1395;SAP=3025.71;SAR=1;SRF=7067;SRP=15335.8;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:13,19:13:464:19:672:-51.1739,0,-32.4645	0/0:62:61,0:61:2136:0:0:0,-18.3628,-192.147	0/1:130:52,78:52:1823:78:2689:-203.116,0,-125.214	0/0:206:206,0:206:7319:0:0:0,-62.0122,-658.764	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.657	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.113	0/0:151:151,0:151:5348:0:0:0,-45.4555,-481.457	0/0:63:63,0:63:2218:0:0:0,-18.9649,-199.884	0/1:62:36,26:36:1257:26:923:-64.7229,0,-94.7661	0/0:72:72,0:72:2491:0:0:0,-21.6742,-224.441	0/0:117:117,0:117:4040:0:0:0,-35.2205,-363.795	0/0:99:99,0:99:3444:0:0:0,-29.802,-310.174	0/0:72:72,0:72:2532:0:0:0,-21.6742,-228.131	0/0:101:101,0:101:3532:0:0:0,-30.404,-318.092	0/0:64:64,0:64:2211:0:0:0,-19.2659,-199.251	0/1:35:15,20:15:528:20:708:-53.5089,0,-37.3153	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:38:19,19:19:684:19:680:-50.09,0,-50.4512	0/0:99:97,2:97:3383:2:72:0,-22.9652,-297.85	0/0:139:139,0:139:4918:0:0:0,-41.8432,-442.776	0/0:88:88,0:88:3104:0:0:0,-26.4906,-279.585	0/0:80:80,0:80:2799:0:0:0,-24.0824,-252.151	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/1:253:119,134:119:4195:134:4719:-348.703,0,-301.572	0/0:233:233,0:233:8238:0:0:0,-70.14,-741.439	0/1:35:17,18:17:599:18:625:-46.0373,0,-43.702	0/0:182:181,1:181:6454:1:27:0,-52.0877,-578.246	0/0:117:116,1:116:4090:1:36:0,-31.6222,-364.69	0/0:120:120,0:120:4236:0:0:0,-36.1236,-381.423	0/1:16:2,14:2:72:14:496:-39.6637,0,-2.02024	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:20:20,0:20:694:0:0:0,-6.0206,-62.7804	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:215:215,0:215:7553:0:0:0,-64.7214,-679.82	0/0:128:128,0:128:4558:0:0:0,-38.5318,-410.387	0/1:66:40,26:40:1411:26:903:-61.7158,0,-107.419	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:133:69,64:69:2435:64:2225:-160.473,0,-179.367	0/0:48:47,1:47:1633:1:36:0,-10.8512,-143.658	0/1:187:82,105:82:2886:105:3660:-273.313,0,-203.683	0/1:61:28,33:28:969:33:1129:-83.5469,0,-69.1389	0/0:52:52,0:52:1809:0:0:0,-15.6536,-163.087	0/0:90:90,0:90:3161:0:0:0,-27.0927,-284.715	0/0:95:95,0:95:3348:0:0:0,-28.5978,-301.536	0/0:191:190,1:190:6738:1:36:0,-53.8985,-602.901	0/0:97:97,0:97:3448:0:0:0,-29.1999,-310.535	0/1:128:55,73:55:1939:73:2530:-189.414,0,-136.254	0/0:73:73,0:73:2547:0:0:0,-21.9752,-229.481	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:113:52,60:52:1847:60:2082:-153.57,0,-132.434	0/0:61:59,2:59:2100:2:72:0,-11.5261,-182.433	0/1:16:8,8:8:284:8:271:-19.9029,0,-21.0869	0/1:129:64,63:64:2265:63:2224:-161.949,0,-165.637	0/1:41:26,15:26:928:15:536:-36.2326,0,-71.496	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/0:98:98,0:98:3468:0:0:0,-29.5009,-312.333	0/0:120:120,0:120:4137:0:0:0,-36.1236,-372.521	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:147:146,0:146:5203:0:0:0,-43.9504,-468.049	0/0:162:161,1:161:5704:1:36:0,-45.1686,-509.882	0/0:55:55,0:55:1933:0:0:0,-16.5566,-174.245	0/0:76:76,0:76:2700:0:0:0,-22.8783,-243.243	0/0:205:204,0:204:7203:0:0:0,-61.4101,-647.973	0/1:140:34,106:34:1201:106:3705:-291.505,0,-66.2495	0/0:61:61,0:61:2137:0:0:0,-18.3628,-192.594	0/0:57:57,0:57:1993:0:0:0,-17.1587,-179.643	0/0:60:60,0:60:2107:0:0:0,-18.0618,-189.897	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/1:118:70,48:70:2455:48:1693:-117.132,0,-185.682	0/0:53:53,0:53:1870:0:0:0,-15.9546,-168.578	0/0:122:122,0:122:4294:0:0:0,-36.7257,-386.638	0/0:158:157,1:157:5585:1:36:0,-43.9645,-499.177	0/1:154:72,82:72:2539:82:2879:-212.987,0,-182.401	0/0:80:79,1:79:2789:1:36:0,-20.5156,-247.684	0/1:26:13,13:13:468:13:458:-33.7273,0,-34.6329	0/1:97:49,48:49:1724:48:1698:-123.905,0,-126.242	0/0:114:114,0:114:4043:0:0:0,-34.3174,-364.058	0/0:139:139,0:139:4897:0:0:0,-41.8432,-440.884	0/0:67:67,0:67:2359:0:0:0,-20.169,-212.56	0/1:75:37,38:37:1287:38:1348:-99.043,0,-93.5528	0/1:64:34,30:34:1200:30:1034:-74.1013,0,-89.0397	0/0:156:156,0:156:5432:0:0:0,-46.9607,-489.021	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/0:83:83,0:83:2855:0:0:0,-24.9855,-257.19	0/0:91:91,0:91:3187:0:0:0,-27.3937,-287.059	0/1:78:43,35:43:1500:35:1235:-87.9731,0,-111.81	0/1:167:83,84:83:2885:84:2904:-211.323,0,-209.616	0/1:164:62,102:62:2207:102:3527:-268.274,0,-149.526	0/0:90:90,0:90:3171:0:0:0,-27.0927,-285.615	0/0:119:119,0:119:4197:0:0:0,-35.8226,-377.916
chr03	23536439	.	AA	AG	133963	PASS	AB=0.44408;ABP=61.0527;AC=154;AF=0.827957;AN=186;AO=6092;CIGAR=1M1X;DP=7329;DPB=7329;DPRA=22.989;EPP=13222.9;EPPR=2654.39;GTI=0;LEN=1;MEANALT=1.07692;MQM=59.9265;MQMR=59.938;NS=93;NUMALT=1;ODDS=0.830739;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=217749;QR=42842;RO=1225;RPL=6092;RPP=13231.6;RPPR=2654.39;RPR=0;RUN=1;SAF=1;SAP=13222.9;SAR=6091;SRF=0;SRP=2663.06;SRR=1225;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:17,9:17:601:9:320:-21.3156,0,-46.5916	1/1:93:0,93:0:0:93:3325:-299.466,-27.9958,0	0/1:86:47,39:47:1659:39:1392:-99.6904,0,-123.708	1/1:166:0,166:0:0:166:5964:-536.863,-49.971,0	1/1:77:0,72:0:0:72:2575:-231.635,-21.6742,0	1/1:46:0,46:0:0:46:1637:-147.572,-13.8474,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:159:0,159:0:0:159:5692:-512.39,-47.8638,0	1/1:76:0,76:0:0:76:2725:-245.436,-22.8783,0	0/1:115:57,58:57:1976:58:2061:-151.141,0,-142.792	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	1/1:78:0,78:0:0:78:2783:-250.711,-23.4803,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:57:0,57:0:0:57:2040:-183.869,-17.1587,0	1/1:68:0,68:0:0:68:2439:-219.765,-20.47,0	1/1:50:0,50:0:0:50:1777:-160.211,-15.0515,0	0/1:60:22,38:22:749:38:1364:-104.999,0,-49.6605	1/1:51:0,51:0:0:51:1827:-164.71,-15.3525,0	0/1:28:11,17:11:368:17:600:-45.8971,0,-25.0129	1/1:181:0,181:0:0:181:6456:-580.857,-54.4864,0	1/1:117:0,117:0:0:117:4161:-374.67,-35.2205,0	1/1:107:0,107:0:0:107:3831:-344.987,-32.2102,0	1/1:73:0,73:0:0:73:2620:-236.032,-21.9752,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:49:0,49:0:0:49:1759:-158.594,-14.7505,0	0/1:319:197,122:197:6911:122:4343:-295.016,0,-526.038	1/1:163:0,163:0:0:163:5829:-524.724,-49.0679,0	0/1:27:15,12:15:532:12:428:-30.731,0,-40.0857	1/1:228:0,228:0:0:228:8129:-731.626,-68.6348,0	1/1:60:2,58:2:68:58:2067:-179.713,-11.6041,0	1/1:111:0,111:0:0:111:3964:-356.952,-33.4143,0	0/1:13:11,2:11:388:2:72:-2.92333,0,-31.3434	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:210:0,210:0:0:210:7507:-675.67,-63.2163,0	1/1:151:0,151:0:0:151:5411:-487.044,-45.4555,0	0/1:60:32,28:32:1096:28:1000:-72.2536,0,-80.8798	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:87:42,45:42:1460:45:1612:-119.18,0,-105.501	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:144:70,74:70:2458:74:2664:-196.657,0,-178.125	0/1:75:40,35:40:1395:35:1251:-90.3177,0,-103.269	1/1:57:0,57:0:0:57:2043:-184.127,-17.1587,0	1/1:80:0,80:0:0:80:2856:-257.27,-24.0824,0	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	1/1:73:3,70:3:97:70:2496:-215.837,-12.9252,0	0/1:102:70,32:70:2458:32:1136:-71.8438,0,-190.768	1/1:90:0,90:0:0:90:3217:-289.752,-27.0927,0	.:.:.:.:.:.:.:.	0/1:126:66,60:66:2332:60:2133:-154.199,0,-172.201	1/1:14:0,14:0:0:14:497:-45.0648,-4.21442,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:129:82,46:82:2826:46:1634:-108.563,0,-215.793	0/0:27:23,2:23:794:2:72:0,-1.04885,-64.9401	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:49:0,49:0:0:49:1734:-156.343,-14.7505,0	1/1:118:0,118:0:0:118:4240:-381.77,-35.5215,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:130:0,130:0:0:130:4644:-418.034,-39.1339,0	1/1:107:2,105:2:72:105:3719:-328.061,-25.3735,0	1/1:48:1,47:1:36:47:1684:-148.248,-10.8512,0	1/1:67:0,66:0:0:66:2359:-212.183,-19.868,0	1/1:135:0,135:0:0:135:4845:-436.201,-40.6391,0	0/1:96:70,26:70:2444:26:924:-54.5788,0,-190.458	1/1:23:0,22:0:0:22:792:-71.2458,-6.62266,0	1/1:39:0,39:0:0:39:1383:-124.767,-11.7402,0	1/1:93:0,93:0:0:93:3332:-300.094,-27.9958,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:63:42,21:42:1464:21:756:-49.4023,0,-113.087	1/1:53:0,53:0:0:53:1868:-168.38,-15.9546,0	1/1:117:0,117:0:0:117:4177:-376.096,-35.2205,0	1/1:135:0,135:0:0:135:4831:-434.944,-40.6391,0	0/1:111:49,62:49:1673:62:2206:-165.39,0,-117.435	1/1:43:1,42:1:36:42:1488:-130.615,-9.34602,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:140:65,74:65:2311:74:2660:-197.442,0,-166.047	1/1:115:0,114:0:0:114:4065:-365.677,-34.3174,0	1/1:185:0,185:0:0:185:6619:-595.774,-55.6906,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	0/1:43:26,17:26:906:17:612:-42.4691,0,-68.9081	0/1:64:36,28:36:1256:28:1008:-71.7704,0,-94.0735	1/1:107:0,107:0:0:107:3806:-342.738,-32.2102,0	1/1:21:0,21:0:0:21:751:-67.9133,-6.32163,0	1/1:71:0,71:0:0:71:2546:-228.899,-21.3731,0	1/1:69:0,69:0:0:69:2457:-221.384,-20.7711,0	0/1:26:7,19:7:252:19:676:-53.3412,0,-15.2022	0/1:113:61,52:61:2142:52:1872:-134.743,0,-159.028	0/1:62:42,20:42:1506:20:712:-45.7428,0,-117.171	1/1:112:0,112:0:0:112:4006:-360.728,-33.7154,0	1/1:86:0,86:0:0:86:3080:-277.414,-25.8886,0
chr03	23536445	.	C	T	136110	PASS	AB=0.443678;ABP=62.9379;AC=155;AF=0.833333;AN=186;AO=6174;CIGAR=1X;DP=7400;DPB=7400;DPRA=23.2119;EPP=13409.7;EPPR=2660.89;GTI=0;LEN=1;MEANALT=1.02198;MQM=59.9258;MQMR=59.9379;NS=93;NUMALT=1;ODDS=2.94895;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221114;QR=43771;RO=1224;RPL=6174;RPP=13409.7;RPPR=2660.89;RPR=0;RUN=1;SAF=0;SAP=13409.7;SAR=6174;SRF=0;SRP=2660.89;SRR=1224;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	0/1:89:48,41:48:1720:41:1472:-105.984,0,-128.294	1/1:168:0,168:0:0:168:6020:-541.903,-50.573,0	1/1:78:0,78:0:0:78:2804:-252.595,-23.4803,0	1/1:45:0,45:0:0:45:1604:-144.605,-13.5464,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:159:0,159:0:0:159:5697:-512.837,-47.8638,0	1/1:77:0,77:0:0:77:2760:-248.536,-23.1793,0	0/1:114:56,58:56:2008:58:2060:-151.354,0,-145.975	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:56:0,56:0:0:56:2012:-181.349,-16.8577,0	1/1:70:0,70:0:0:70:2511:-226.242,-21.0721,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:64:23,41:23:816:41:1472:-113.51,0,-54.4958	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:29:12,17:12:428:17:612:-46.6836,0,-30.1289	1/1:184:0,184:0:0:184:6612:-594.886,-55.3895,0	1/1:120:0,120:0:0:120:4286:-385.907,-36.1236,0	1/1:108:0,108:0:0:108:3868:-348.314,-32.5112,0	1/1:74:0,74:0:0:74:2625:-236.481,-22.2762,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:49:0,49:0:0:49:1759:-158.594,-14.7505,0	0/1:323:198,125:198:7096:125:4454:-303.796,0,-541.465	1/1:164:0,164:0:0:164:5859:-527.42,-49.3689,0	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	1/1:236:0,236:0:0:236:8438:-759.418,-71.0431,0	1/1:61:2,59:2:72:59:2108:-183.096,-11.5261,0	1/1:112:0,112:0:0:112:4020:-361.988,-33.7154,0	0/1:13:11,2:11:384:2:72:-2.92333,0,-30.9813	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:206:0,206:0:0:206:7376:-663.887,-62.0122,0	1/1:152:0,152:0:0:152:5456:-490.972,-45.7566,0	0/1:61:33,28:33:1180:28:1004:-72.313,0,-88.1452	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:85:40,45:40:1432:45:1616:-120.142,0,-103.59	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:145:71,74:71:2536:74:2651:-195.186,0,-184.842	0/1:74:39,35:39:1404:35:1260:-91.4293,0,-104.383	1/1:59:0,59:0:0:59:2116:-190.695,-17.7608,0	1/1:81:0,81:0:0:81:2904:-261.588,-24.3834,0	1/1:94:0,94:0:0:94:3357:-302.337,-28.2968,0	1/1:85:0,85:0:0:85:3024:-272.388,-25.5876,0	1/1:73:3,70:3:100:70:2492:-215.197,-12.6447,0	0/1:102:70,32:70:2516:32:1144:-72.5645,0,-195.986	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	.:.:.:.:.:.:.:.	0/1:127:64,62:64:2292:62:2216:-160.787,0,-168.244	1/1:13:0,13:0:0:13:465:-42.1881,-3.91339,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:127:81,46:81:2888:46:1652:-110.738,0,-221.926	0/1:27:23,4:23:824:4:144:-5.18581,0,-66.3555	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	1/1:118:0,118:0:0:118:4213:-379.342,-35.5215,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:133:0,133:0:0:133:4743:-426.471,-40.037,0	1/1:110:2,108:2:72:108:3854:-340.213,-26.2766,0	1/1:46:1,45:1:36:45:1616:-142.132,-10.2491,0	1/1:67:0,67:0:0:67:2382:-214.589,-20.169,0	1/1:140:0,140:0:0:140:5024:-452.305,-42.1442,0	0/1:94:69,25:69:2457:25:881:-51.309,0,-192.956	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:41:0,41:0:0:41:1468:-132.408,-12.3422,0	1/1:94:0,94:0:0:94:3365:-303.062,-28.2968,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:64:43,21:43:1540:21:756:-49.1013,0,-119.627	1/1:53:0,53:0:0:53:1904:-171.626,-15.9546,0	1/1:117:0,117:0:0:117:4200:-378.165,-35.2205,0	1/1:141:0,141:0:0:141:5049:-454.553,-42.4452,0	0/1:111:47,64:47:1673:64:2291:-173.037,0,-117.441	1/1:43:1,42:1:36:42:1508:-132.413,-9.34602,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:142:67,75:67:2400:75:2677:-198.427,0,-173.511	1/1:115:0,115:0:0:115:4117:-370.705,-34.6185,0	1/1:185:0,185:0:0:185:6635:-597.191,-55.6906,0	1/1:80:0,80:0:0:80:2860:-257.638,-24.0824,0	0/1:43:26,17:26:936:17:612:-42.4691,0,-71.6152	0/1:66:37,29:37:1332:29:1040:-74.0464,0,-100.314	1/1:107:0,107:0:0:107:3844:-346.154,-32.2102,0	1/1:22:0,22:0:0:22:787:-71.1519,-6.62266,0	1/1:77:0,77:0:0:77:2764:-248.629,-23.1793,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:28:9,19:9:324:19:684:-53.4615,0,-21.077	0/1:112:60,51:60:2140:51:1836:-131.786,0,-159.133	0/1:61:41,20:41:1437:20:720:-46.7659,0,-111.261	1/1:113:0,113:0:0:113:4051:-364.776,-34.0164,0	1/1:85:0,85:0:0:85:3036:-273.465,-25.5876,0
chr03	23539543	.	T	A	70369.3	PASS	AB=0.491911;ABP=6.62851;AC=29;AF=0.154255;AN=188;AO=3162;CIGAR=1X;DP=23234;DPB=23234;DPRA=1.15614;EPP=6860.52;EPPR=43547.5;GTI=0;LEN=1;MEANALT=1.13043;MQM=59.9557;MQMR=59.9884;NS=94;NUMALT=1;ODDS=20.2776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112009;QR=715315;RO=20057;RPL=1811;RPP=148.325;RPPR=273.625;RPR=1351;RUN=1;SAF=1810;SAP=147.064;SAR=1352;SRF=10818;SRP=272.941;SRR=9239;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:98:37,61:37:1304:61:2163:-165.436,0,-88.1604	0/0:401:400,1:400:14308:1:36:0,-117.115,-1283.87	0/1:303:152,151:152:5440:151:5377:-392.851,0,-398.517	0/0:531:531,0:531:18964:0:0:0,-159.847,-1706.13	0/0:225:224,1:224:7935:1:36:0,-64.1335,-710.579	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:406:404,2:404:14429:2:72:0,-115.381,-1291.52	0/0:472:471,0:471:16831:0:0:0,-141.785,-1514.08	0/0:272:272,0:272:9712:0:0:0,-81.8802,-874.033	0/1:196:103,93:103:3683:93:3316:-239.658,0,-272.671	0/0:172:172,0:172:6112:0:0:0,-51.7772,-550.184	0/0:176:176,0:176:6288:0:0:0,-52.9813,-566.015	0/0:158:158,0:158:5672:0:0:0,-47.5627,-510.596	0/0:178:178,0:178:6302:0:0:0,-53.5833,-567.277	0/0:169:168,0:168:6011:0:0:0,-50.573,-540.775	0/0:176:176,0:176:6250:0:0:0,-52.9813,-561.234	0/1:166:82,84:82:2919:84:2987:-219.084,0,-212.974	0/0:170:170,0:170:6078:0:0:0,-51.1751,-547.122	0/1:128:72,56:72:2564:56:2004:-142.102,0,-192.479	0/0:1102:1100,1:1100:39296:1:32:0,-328.575,-3531.91	0/0:386:385,1:385:13684:1:36:0,-112.599,-1227.75	0/0:281:281,0:281:9992:0:0:0,-84.5894,-899.206	0/0:174:174,0:174:6193:0:0:0,-52.3792,-557.467	0/0:382:382,0:382:13689:0:0:0,-114.993,-1231.79	0/0:210:210,0:210:7451:0:0:0,-63.2163,-670.639	0/1:784:438,345:438:15619:345:12126:-855.132,0,-1169.34	0/0:444:443,1:443:15797:1:36:0,-130.059,-1417.83	0/1:115:68,47:68:2425:47:1648:-113.986,0,-183.886	0/0:594:593,0:593:21120:0:0:0,-178.511,-1899.92	0/0:258:254,4:254:8999:4:144:0,-64.3521,-796.584	0/0:252:252,0:252:8984:0:0:0,-75.8596,-808.54	0/1:22:13,9:13:468:9:315:-22.0646,0,-35.837	0/1:43:17,26:17:593:26:924:-70.5334,0,-40.7504	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:451:451,0:451:16087:0:0:0,-135.765,-1447.52	0/0:430:430,0:430:15301:0:0:0,-129.443,-1376.81	0/1:153:64,89:64:2280:89:3145:-237.211,0,-159.405	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:476:261,215:261:9314:215:7625:-542.946,0,-694.936	0/0:112:112,0:112:4003:0:0:0,-33.7154,-360.459	0/1:394:214,180:214:7639:180:6344:-452.453,0,-568.94	0/1:242:116,124:116:4139:124:4372:-321.03,0,-300.087	0/0:177:177,0:177:6324:0:0:0,-53.2823,-569.254	0/0:233:233,0:233:8281:0:0:0,-70.14,-745.304	0/0:310:310,0:310:11027:0:0:0,-93.3193,-992.33	0/0:308:308,0:308:10955:0:0:0,-92.7172,-985.85	0/0:231:230,1:230:8161:1:36:0,-65.9397,-730.908	0/1:445:211,234:211:7489:234:8316:-614.496,0,-540.099	0/0:443:443,0:443:15858:0:0:0,-133.356,-1426.91	0/0:30:30,0:30:1048:0:0:0,-9.0309,-94.6273	0/1:429:221,208:221:7916:208:7395:-536.462,0,-583.322	0/0:114:113,1:113:4039:1:36:0,-30.7191,-360.1	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	0/1:319:176,143:176:6268:143:5100:-363.117,0,-468.187	0/1:140:76,64:76:2720:64:2248:-160.438,0,-202.899	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:36:26,10:26:928:10:338:-19.9089,0,-73.0012	0/0:140:139,1:139:4954:1:36:0,-38.5459,-442.41	0/0:253:252,0:252:9035:0:0:0,-75.8596,-812.765	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:383:382,0:382:13628:0:0:0,-114.993,-1225.95	0/0:419:417,2:417:14856:2:72:0,-119.295,-1329.94	0/0:196:196,0:196:6964:0:0:0,-59.0019,-626.827	0/0:206:206,0:206:7278:0:0:0,-62.0122,-655.076	0/0:443:437,6:437:15544:6:212:0,-113.931,-1379.21	0/1:201:80,121:80:2859:121:4307:-327.302,0,-197.04	0/0:75:73,2:73:2615:2:72:0,-15.7405,-228.76	0/0:187:187,0:187:6668:0:0:0,-56.2926,-600.197	0/0:190:190,0:190:6803:0:0:0,-57.1957,-612.341	0/0:53:53,0:53:1890:0:0:0,-15.9546,-170.377	0/1:164:83,81:83:2964:81:2898:-211.687,0,-217.625	0/0:174:173,0:173:6188:0:0:0,-52.0782,-556.658	0/0:449:448,0:448:15928:0:0:0,-134.861,-1432.86	0/0:553:553,0:553:19702:0:0:0,-166.47,-1772.72	0/1:234:118,116:118:4203:116:4128:-301.252,0,-308.012	0/0:277:275,1:275:9856:1:32:0,-80.2248,-883.762	0/1:31:18,13:18:644:13:458:-32.2221,0,-48.9587	0/1:322:176,146:176:6299:146:5175:-368.961,0,-470.071	0/0:217:216,1:216:7740:1:32:0,-62.1242,-693.362	0/0:469:466,2:466:16621:2:68:0,-134.778,-1489.09	0/0:238:238,0:238:8496:0:0:0,-71.6451,-764.641	0/1:170:85,84:85:3044:84:3011:-219.93,0,-222.956	0/1:282:146,136:146:5201:136:4842:-351.045,0,-383.34	0/0:319:318,0:318:11362:0:0:0,-95.7275,-1022.1	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/0:205:205,0:205:7348:0:0:0,-61.7111,-661.367	0/0:161:161,0:161:5772:0:0:0,-48.4658,-519.594	0/1:85:41,44:41:1464:44:1492:-108.979,0,-106.469	0/1:191:77,114:77:2723:114:4031:-305.465,0,-187.815	0/1:173:47,126:47:1688:126:4436:-347.334,0,-100.129	0/0:238:236,2:236:8394:2:72:0,-64.8084,-748.632	0/0:274:274,0:274:9755:0:0:0,-82.4822,-877.902
chr03	23542276	.	C	T	29706	PASS	AB=0.522388;ABP=13.8028;AC=29;AF=0.154255;AN=188;AO=1303;CIGAR=1X;DP=8706;DPB=8706;DPRA=1.14884;EPP=2823.76;EPPR=16054.5;GTI=1;LEN=1;MEANALT=1.02703;MQM=59.9839;MQMR=59.9889;NS=94;NUMALT=1;ODDS=2.50686;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46385;QR=261489;RO=7396;RPL=684;RPP=10.0513;RPPR=18.0063;RPR=619;RUN=1;SAF=683;SAP=9.62471;SAR=620;SRF=3810;SRP=17.742;SRR=3586;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:17,24:17:591:24:856:-65.0189,0,-41.173	0/0:86:86,0:86:3044:0:0:0,-25.8886,-274.187	0/1:132:60,72:60:2147:72:2563:-191.184,0,-153.761	0/0:127:127,0:127:4496:0:0:0,-38.2308,-404.809	0/0:64:64,0:64:2257:0:0:0,-19.2659,-203.392	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/0:129:129,0:129:4546:0:0:0,-38.8329,-409.308	0/0:110:109,1:109:3860:1:36:0,-29.515,-343.999	0/0:79:78,1:78:2766:1:36:0,-20.1831,-245.583	0/1:67:25,42:25:892:42:1485:-113.773,0,-60.4307	0/0:95:95,0:95:3358:0:0:0,-28.5978,-302.439	0/0:154:154,0:154:5387:0:0:0,-46.3586,-484.968	0/0:149:149,0:149:5281:0:0:0,-44.8535,-475.427	0/0:121:120,0:120:4222:0:0:0,-36.1236,-379.804	0/0:124:124,0:124:4393:0:0:0,-37.3277,-395.543	0/0:116:116,0:116:4112:0:0:0,-34.9195,-370.266	0/1:130:71,59:71:2462:59:2100:-150.136,0,-182.697	0/0:102:101,0:101:3548:0:0:0,-30.404,-319.259	0/1:114:54,60:54:1910:60:2148:-159.27,0,-137.859	0/0:102:102,0:102:3617:0:0:0,-30.7051,-325.734	0/0:140:139,0:139:4926:0:0:0,-41.8432,-443.289	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.136	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:107:106,0:106:3800:0:0:0,-31.9092,-340.981	0/0:53:52,1:52:1860:1:36:0,-12.3563,-164.081	0/1:160:77,83:77:2751:83:2958:-218.287,0,-199.667	0/0:163:163,0:163:5720:0:0:0,-49.0679,-514.921	0/1:82:46,36:46:1643:36:1279:-90.728,0,-123.473	0/0:153:153,0:153:5476:0:0:0,-46.0576,-492.968	0/0:43:43,0:43:1522:0:0:0,-12.9443,-137.272	0/0:95:95,0:95:3350:0:0:0,-28.5978,-301.717	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:7,2:7:243:2:72:-4.12745,0,-19.4982	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:362:361,1:361:12766:1:36:0,-105.375,-1145.18	0/0:49:49,0:49:1737:0:0:0,-14.7505,-156.613	0/1:132:52,80:52:1807:80:2840:-216.104,0,-123.172	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:96:46,50:46:1620:50:1784:-131.944,0,-117.187	0/0:72:72,0:72:2550:0:0:0,-21.6742,-229.751	0/1:115:61,54:61:2174:54:1940:-140.258,0,-161.307	0/1:160:74,86:74:2624:86:3059:-227.375,0,-188.241	0/0:135:135,0:135:4790:0:0:0,-40.639,-431.26	0/0:63:63,0:63:2230:0:0:0,-18.9649,-200.963	0/0:81:80,0:80:2844:0:0:0,-24.0824,-255.985	0/0:92:92,0:92:3259:0:0:0,-27.6948,-293.53	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.354	0/1:88:41,47:41:1459:47:1675:-124.546,0,-105.115	0/0:99:99,0:99:3489:0:0:0,-29.802,-314.221	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:115:41,74:41:1440:74:2653:-204.398,0,-95.2746	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:4:3,1:3:108:1:20:-0.795837,0,-8.87105	0/1:74:36,38:36:1288:38:1348:-99.3435,0,-93.9428	0/1:35:16,19:16:567:19:665:-49.6367,0,-40.8247	0/0:4:4,0:4:131:0:0:0,-1.20412,-12.1135	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:55:55,0:55:1954:0:0:0,-16.5566,-176.134	0/0:170:170,0:170:5997:0:0:0,-51.1751,-539.84	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:111:109,1:109:3866:1:36:0,-29.8749,-344.539	0/0:45:44,0:44:1576:0:0:0,-13.2453,-141.772	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.347	0/0:99:98,1:98:3455:1:36:0,-26.2037,-307.563	0/1:63:24,39:24:837:39:1362:-103.909,0,-56.6808	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.031	0/0:100:100,0:100:3565:0:0:0,-30.103,-321.057	0/0:197:197,0:197:7029:0:0:0,-59.3029,-632.673	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:46:24,22:24:852:22:771:-55.8513,0,-63.153	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/0:186:185,1:185:6544:1:36:0,-52.3933,-585.447	0/0:100:100,0:100:3577:0:0:0,-30.103,-322.136	0/1:87:38,49:38:1346:49:1752:-131.775,0,-95.2491	0/0:78:78,0:78:2749:0:0:0,-23.4803,-247.65	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/1:87:43,44:43:1516:44:1576:-115.942,0,-110.541	0/0:85:85,0:85:3006:0:0:0,-25.5875,-270.77	0/0:159:159,0:159:5651:0:0:0,-47.8638,-508.715	0/0:179:179,0:179:6332:0:0:0,-53.8844,-569.976	0/1:109:51,58:51:1781:58:2067:-153.488,0,-127.758	0/1:165:89,76:89:3115:76:2724:-195.733,0,-230.909	0/0:240:239,1:239:8334:1:32:0,-69.0479,-746.69	0/0:83:83,0:83:2940:0:0:0,-24.9855,-264.834	0/0:123:123,0:123:4284:0:0:0,-37.0267,-385.742	0/0:134:134,0:134:4693:0:0:0,-40.338,-422.535	0/1:66:35,31:35:1256:31:1108:-80.163,0,-93.4773	0/1:150:86,64:86:2978:64:2272:-159.587,0,-223.096	0/1:125:53,72:53:1872:72:2556:-192.662,0,-131.128	0/0:62:62,0:62:2153:0:0:0,-18.6639,-194.034	0/0:236:236,0:236:8293:0:0:0,-71.0431,-746.389
chr03	23542303	.	A	G	10852.1	PASS	AB=0.526829;ABP=10.7005;AC=28;AF=0.148936;AN=188;AO=651;CIGAR=1X;DP=4402;DPB=4402;DPRA=1.09379;EPP=1416.64;EPPR=8139.52;GTI=0;LEN=1;MEANALT=1;MQM=59.9677;MQMR=59.9949;NS=94;NUMALT=1;ODDS=3.34449;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23222;QR=134310;RO=3751;RPL=651;RPP=1416.64;RPPR=8139.52;RPR=0;RUN=1;SAF=0;SAP=1416.64;SAR=651;SRF=0;SRP=8148.2;SRR=3751;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:11,18:11:388:18:640:-49.1994,0,-26.5275	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:90:44,46:44:1580:46:1634:-120.255,0,-115.399	0/0:57:57,0:57:2037:0:0:0,-17.1587,-183.6	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:46:17,29:17:612:29:1040:-80.067,0,-41.5661	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/0:54:54,0:54:1935:0:0:0,-16.2556,-174.426	0/1:55:32,23:32:1148:23:816:-57.2051,0,-87.0732	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:53:21,32:21:756:32:1148:-87.6752,0,-52.4126	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:95:48,47:48:1716:47:1680:-122.886,0,-126.128	0/0:102:102,0:102:3627:0:0:0,-30.7051,-326.637	0/1:38:21,17:21:747:17:604:-43.2515,0,-56.1152	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:137:135,2:135:4844:2:72:0,-34.4044,-429.276	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:49:17,32:17:595:32:1148:-88.8794,0,-39.1262	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:51:27,24:27:957:24:864:-62.73,0,-71.0913	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:79:49,30:49:1764:30:1074:-73.191,0,-135.262	0/1:68:36,32:36:1288:32:1152:-83.5201,0,-95.7535	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:38:18,20:18:648:20:716:-53.3286,0,-47.2127	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:47:15,32:15:532:32:1137:-88.4894,0,-34.0647	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:21:10,11:10:356:11:388:-28.9357,0,-26.0578	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:84:84,0:84:3011:0:0:0,-25.2865,-271.22	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:71:71,0:71:2516:0:0:0,-21.3731,-226.691	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.0941	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:46:17,29:17:608:29:1020:-78.2642,0,-41.2046	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:81:81,0:81:2907:0:0:0,-24.3834,-261.864	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:17:8,9:8:288:9:316:-23.6561,0,-21.1499	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:125:124,1:124:4444:1:36:0,-34.0305,-396.532	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:53:19,34:19:680:34:1220:-94.1522,0,-45.5746	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:39:16,23:16:576:23:820:-62.3823,0,-40.4348	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:116:116,0:116:4142:0:0:0,-34.9195,-372.963	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/1:47:24,23:24:864:23:815:-59.5224,0,-63.9342	0/1:77:41,36:41:1468:36:1276:-91.9638,0,-109.237	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.553	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/1:28:18,10:18:644:10:352:-23.5894,0,-49.8618	0/1:63:29,34:29:1031:34:1212:-90.4209,0,-74.1377	0/1:63:25,38:25:887:38:1358:-103.556,0,-61.1832	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:97:97,0:97:3450:0:0:0,-29.1999,-310.713
chr03	23585842	.	G	A	14722.1	PASS	AB=0.464503;ABP=24.5929;AC=29;AF=0.154255;AN=188;AO=920;CIGAR=1X;DP=7746;DPB=7746;DPRA=0.922096;EPP=2000.76;EPPR=14723.6;GTI=2;LEN=1;MEANALT=1;MQM=59.9576;MQMR=59.9916;NS=94;NUMALT=1;ODDS=0.106295;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32921;QR=243041;RO=6823;RPL=0;RPP=2000.76;RPPR=14723.6;RPR=920;RUN=1;SAF=0;SAP=2000.76;SAR=920;SRF=0;SRP=14819;SRR=6823;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:25,10:25:885:10:356:-21.8452,0,-69.4305	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.514	0/1:138:54,84:54:1923:84:2995:-228.239,0,-131.804	0/0:169:169,0:169:6008:0:0:0,-50.8741,-540.825	0/0:65:65,0:65:2304:0:0:0,-19.5669,-207.619	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:151:151,0:151:5372:0:0:0,-45.4555,-483.611	0/0:110:110,0:110:3935:0:0:0,-33.1133,-354.342	0/0:90:90,0:90:3195:0:0:0,-27.0927,-287.772	0/1:53:29,24:29:1035:24:864:-62.128,0,-77.5085	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:71:71,0:71:2497:0:0:0,-21.3731,-224.98	0/0:75:75,0:75:2656:0:0:0,-22.5772,-239.285	0/0:81:81,0:81:2868:0:0:0,-24.3834,-258.356	0/0:61:61,0:61:2153:0:0:0,-18.3628,-194.033	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/1:77:38,39:38:1341:39:1404:-103.48,0,-97.8087	0/0:80:80,0:80:2839:0:0:0,-24.0824,-255.747	0/1:65:34,31:34:1215:31:1116:-81.1801,0,-90.0888	0/0:172:172,0:172:6119:0:0:0,-51.7772,-550.812	0/0:137:136,0:136:4847:0:0:0,-40.9401,-436.023	0/0:119:119,0:119:4235:0:0:0,-35.8226,-381.332	0/0:90:90,0:90:3206:0:0:0,-27.0927,-288.763	0/0:110:110,0:110:3917:0:0:0,-33.1133,-352.723	0/0:87:87,0:87:3105:0:0:0,-26.1896,-279.606	0/1:149:98,51:98:3498:51:1836:-120.667,0,-270.177	0/0:139:139,0:139:4965:0:0:0,-41.8432,-446.998	0/1:45:17,28:17:612:28:1008:-77.49,0,-41.8671	0/0:192:192,0:192:6848:0:0:0,-57.7978,-616.39	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.591	0/0:110:110,0:110:3902:0:0:0,-33.1133,-351.373	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:252:251,1:251:8967:1:36:0,-72.2613,-803.412	0/0:160:160,0:160:5718:0:0:0,-48.1648,-514.665	0/1:94:51,43:51:1800:43:1548:-111.316,0,-133.982	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:110:74,36:74:2652:36:1292:-83.4705,0,-205.813	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:99:64,35:64:2296:35:1243:-82.3609,0,-177.099	0/1:88:47,41:47:1688:41:1454:-104.659,0,-125.716	0/0:67:67,0:67:2328:0:0:0,-20.169,-209.775	0/0:96:96,0:96:3414:0:0:0,-28.8989,-307.472	0/0:113:113,0:113:4022:0:0:0,-34.0164,-362.167	0/0:128:128,0:128:4546:0:0:0,-38.5318,-409.304	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/1:71:42,29:42:1489:29:1040:-72.5412,0,-112.929	0/0:132:131,0:131:4665:0:0:0,-39.4349,-419.652	0/0:7:7,0:7:235:0:0:0,-2.10721,-21.4779	0/1:84:38,46:38:1347:46:1637:-122.33,0,-96.243	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:11:2,9:2:68:9:324:-26.1945,0,-3.14638	0/1:98:46,52:46:1635:52:1856:-137.819,0,-117.937	0/1:51:35,16:35:1260:16:572:-36.4609,0,-98.353	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/0:142:141,1:141:5008:1:36:0,-39.148,-447.268	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:139:139,0:139:4931:0:0:0,-41.8432,-443.942	0/0:138:138,0:138:4913:0:0:0,-41.5421,-442.32	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:157:156,1:156:5564:1:36:0,-43.6634,-497.285	0/1:81:32,49:32:1135:49:1741:-132.589,0,-78.0746	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.082	0/0:78:78,0:78:2782:0:0:0,-23.4803,-250.62	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:76:49,27:49:1746:27:949:-62.8445,0,-134.545	0/0:74:74,0:74:2616:0:0:0,-22.2762,-235.686	0/0:132:132,0:132:4740:0:0:0,-39.736,-426.757	0/0:127:127,0:127:4523:0:0:0,-38.2308,-407.237	0/1:74:49,25:49:1743:25:883:-57.5102,0,-134.877	0/0:55:54,1:54:1931:1:36:0,-12.9584,-170.468	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:62:41,21:41:1472:21:752:-49.3424,0,-114.112	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/0:175:175,0:175:6227:0:0:0,-52.6802,-560.528	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/1:49:23,26:23:828:26:936:-69.809,0,-60.0936	0/1:103:51,52:51:1823:52:1872:-137.745,0,-133.344	0/0:128:128,0:128:4540:0:0:0,-38.5318,-408.766	0/0:42:42,0:42:1478:0:0:0,-12.6433,-133.31	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/1:31:19,12:19:680:12:432:-29.8893,0,-52.1972	0/1:118:54,64:54:1926:64:2291:-170.929,0,-138.093	0/1:68:23,45:23:828:45:1620:-125.62,0,-54.3741	0/0:96:95,0:95:3403:0:0:0,-28.5978,-306.124	0/0:105:105,0:105:3745:0:0:0,-31.6081,-337.249
chr03	23585848	.	T	C	19579.8	PASS	AB=0.471728;ABP=16.2711;AC=29;AF=0.154255;AN=188;AO=905;CIGAR=1X;DP=7418;DPB=7418;DPRA=0.902731;EPP=154.176;EPPR=60.1635;GTI=1;LEN=1;MEANALT=1;MQM=59.9525;MQMR=59.9942;NS=94;NUMALT=1;ODDS=0.91292;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32281;QR=231346;RO=6512;RPL=327;RPP=154.176;RPPR=60.1635;RPR=578;RUN=1;SAF=0;SAP=1968.19;SAR=905;SRF=0;SRP=14143.6;SRR=6512;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:25,10:25:896:10:360:-22.2083,0,-70.4243	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/1:132:52,80:52:1837:80:2876:-219.34,0,-125.873	0/0:160:159,1:159:5600:1:36:0,-44.5665,-500.528	0/0:62:62,0:62:2136:0:0:0,-18.6639,-192.503	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:141:141,0:141:4998:0:0:0,-42.4452,-449.97	0/0:102:102,0:102:3613:0:0:0,-30.7051,-325.377	0/0:84:84,0:84:2954:0:0:0,-25.2865,-266.093	0/1:55:29,26:29:1036:26:928:-67.2816,0,-76.9973	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/0:70:69,0:69:2464:0:0:0,-20.7711,-221.655	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:53:53,0:53:1872:0:0:0,-15.9546,-168.756	0/1:77:38,39:38:1344:39:1387:-101.949,0,-98.0808	0/0:78:77,1:77:2764:1:36:0,-19.8821,-245.403	0/1:65:34,31:34:1220:31:1104:-80.0991,0,-90.5399	0/0:162:162,0:162:5777:0:0:0,-48.7669,-520.046	0/0:127:127,0:127:4506:0:0:0,-38.2308,-405.709	0/0:114:114,0:114:4041:0:0:0,-34.3174,-363.88	0/0:88:88,0:88:3106:0:0:0,-26.4906,-279.767	0/0:108:108,0:108:3838:0:0:0,-32.5112,-345.615	0/0:83:83,0:83:2960:0:0:0,-24.9855,-266.565	0/1:144:92,52:92:3257:52:1845:-122.98,0,-250.004	0/0:130:130,0:130:4610:0:0:0,-39.1339,-415.065	0/1:46:18,28:18:644:28:985:-75.1141,0,-44.4432	0/0:187:187,0:187:6652:0:0:0,-56.2926,-598.763	0/0:105:105,0:105:3703:0:0:0,-31.6081,-333.471	0/0:108:108,0:108:3856:0:0:0,-32.5112,-347.237	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:241:241,0:241:8604:0:0:0,-72.5482,-774.359	0/0:149:149,0:149:5280:0:0:0,-44.8535,-475.335	0/1:89:48,41:48:1701:41:1468:-105.624,0,-126.582	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:107:72,35:72:2584:35:1244:-80.0545,0,-200.599	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:96:60,36:60:2121:36:1284:-86.9535,0,-162.258	0/1:85:47,38:47:1684:38:1352:-96.391,0,-126.259	0/0:67:67,0:67:2377:0:0:0,-20.169,-214.187	0/0:92:92,0:92:3289:0:0:0,-27.6948,-296.228	0/0:107:107,0:107:3785:0:0:0,-32.2102,-340.851	0/0:121:121,0:121:4286:0:0:0,-36.4246,-385.919	0/0:63:63,0:63:2237:0:0:0,-18.9649,-201.592	0/1:70:41,29:41:1457:29:1036:-72.4818,0,-110.352	0/0:126:126,0:126:4481:0:0:0,-37.9298,-403.461	0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2943	0/1:80:36,44:36:1284:44:1576:-118.049,0,-91.781	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:9:1,8:1:36:8:279:-22.7383,0,-0.889005	0/1:92:41,51:41:1437:51:1824:-136.746,0,-101.929	0/1:50:34,16:34:1175:16:572:-36.7619,0,-90.9966	0/0:5:5,0:5:161:0:0:0,-1.50515,-14.8066	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.789	0/0:140:139,1:139:4957:1:36:0,-38.5459,-442.681	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/0:137:137,0:137:4853:0:0:0,-41.2411,-436.928	0/0:132:132,0:132:4667:0:0:0,-39.736,-420.192	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:46:46,0:46:1633:0:0:0,-13.8474,-147.257	0/0:146:145,1:145:5133:1:36:0,-40.3521,-458.513	0/1:78:29,49:29:1025:49:1760:-135.201,0,-69.0804	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:74:74,0:74:2621:0:0:0,-22.2762,-236.137	0/0:74:74,0:74:2628:0:0:0,-22.2762,-236.768	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/1:75:48,27:48:1716:27:964:-64.4996,0,-132.148	0/0:67:67,0:67:2370:0:0:0,-20.169,-213.555	0/0:122:122,0:122:4285:0:0:0,-36.7257,-385.827	0/0:120:120,0:120:4262:0:0:0,-36.1236,-383.758	0/1:69:45,24:45:1574:24:855:-56.4981,0,-121.175	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:6:4,2:4:129:2:72:-5.03054,0,-10.1215	0/1:61:41,20:41:1472:20:716:-46.4049,0,-114.413	0/0:74:74,0:74:2632:0:0:0,-22.2762,-237.128	0/0:171:171,0:171:6060:0:0:0,-51.4761,-545.503	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:49:23,26:23:828:26:932:-69.4484,0,-60.0936	0/1:101:49,52:49:1760:52:1846:-136.005,0,-128.28	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.444	0/0:37:37,0:37:1305:0:0:0,-11.1381,-117.749	0/0:75:75,0:75:2665:0:0:0,-22.5772,-240.095	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	0/1:112:49,63:49:1760:63:2229:-167.158,0,-124.96	0/1:67:23,44:23:805:44:1563:-120.792,0,-52.5985	0/0:88:88,0:88:3129:0:0:0,-26.4906,-281.836	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842
chr03	23597072	.	A	G	106612	PASS	AB=0.458639;ABP=31.3918;AC=155;AF=0.842391;AN=184;AO=4859;CIGAR=1X;DP=5904;DPB=5904;DPRA=0;EPP=10493.5;EPPR=2231.07;GTI=0;LEN=1;MEANALT=1.03261;MQM=59.9916;MQMR=60;NS=92;NUMALT=1;ODDS=1.94542;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173642;QR=37374;RO=1042;RPL=7;RPP=10493.5;RPPR=2231.07;RPR=4852;RUN=1;SAF=4859;SAP=10554.2;SAR=0;SRF=1042;SRP=2265.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:445:14:504:-37.5703,0,-32.2475	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:104:56,48:56:2008:48:1728:-124.498,0,-149.686	1/1:99:2,97:2:72:97:3453:-304.146,-22.9652,0	1/1:30:0,30:0:0:30:1061:-95.7994,-9.0309,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:48:0,48:0:0:48:1679:-151.393,-14.4494,0	1/1:129:0,129:0:0:129:4601:-414.254,-38.8329,0	1/1:107:2,105:2:72:105:3751:-330.953,-25.3735,0	0/1:40:19,21:19:676:21:744:-55.2408,0,-49.1268	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:84:0,84:0:0:84:2993:-269.599,-25.2865,0	1/1:72:0,72:0:0:72:2557:-230.377,-21.6742,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:46:26,20:26:936:20:712:-50.5593,0,-70.7121	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:49:28,21:28:1004:21:756:-53.6168,0,-75.9254	1/1:133:0,133:0:0:133:4732:-426.037,-40.037,0	1/1:81:0,81:0:0:81:2892:-260.517,-24.3834,0	1/1:44:1,43:1:36:43:1530:-134.394,-9.64705,0	1/1:91:0,91:0:0:91:3260:-293.621,-27.3937,0	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	1/1:49:0,49:0:0:49:1740:-156.884,-14.7505,0	0/1:214:111,103:111:3972:103:3685:-267.431,0,-293.251	1/1:108:0,108:0:0:108:3880:-349.393,-32.5112,0	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	1/1:60:0,60:0:0:60:2139:-192.777,-18.0618,0	1/1:94:2,92:2:72:92:3291:-289.572,-21.4601,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:130:0,130:0:0:130:4634:-417.223,-39.1339,0	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	0/1:42:22,20:22:784:20:720:-52.4855,0,-58.2407	.:.:.:.:.:.:.:.	0/1:99:48,51:48:1728:51:1817:-134.007,0,-126.003	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:102:52,50:52:1868:50:1779:-129.687,0,-137.694	0/1:99:68,31:68:2436:31:1116:-70.9497,0,-189.693	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	1/1:115:0,115:0:0:115:4110:-370.085,-34.6185,0	1/1:86:0,86:0:0:86:3057:-275.359,-25.8886,0	1/1:96:0,95:0:0:95:3365:-302.705,-28.5979,0	1/1:75:0,75:0:0:75:2660:-239.645,-22.5773,0	0/1:54:29,25:29:1044:25:896:-64.7047,0,-78.0192	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:95:49,46:49:1760:46:1637:-119.019,0,-130.086	1/1:47:0,47:0:0:47:1681:-151.576,-14.1484,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:65:29,36:29:1044:36:1289:-96.7463,0,-74.7079	0/1:43:25,18:25:900:18:644:-45.3463,0,-68.3767	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:72:0,72:0:0:72:2575:-231.999,-21.6742,0	.:.:.:.:.:.:.:.	1/1:144:0,144:0:0:144:5165:-464.989,-43.3483,0	1/1:120:1,119:1:36:119:4267:-380.609,-32.5253,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:145:0,145:0:0:145:5190:-467.232,-43.6494,0	0/1:82:50,32:50:1800:32:1148:-78.9454,0,-137.598	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:164:99,65:99:3556:65:2336:-161.13,0,-270.878	1/1:74:0,74:0:0:74:2633:-237.217,-22.2762,0	1/1:80:0,80:0:0:80:2861:-257.726,-24.0824,0	1/1:49:0,48:0:0:48:1724:-155.086,-14.4494,0	0/1:133:64,69:64:2296:69:2464:-181.977,0,-166.864	1/1:50:0,49:0:0:49:1752:-157.643,-14.7505,0	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/1:55:24,31:24:845:31:1093:-82.121,0,-59.8104	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	1/1:124:0,124:0:0:124:4436:-399.411,-37.3277,0	1/1:57:0,57:0:0:57:2034:-183.331,-17.1587,0	0/1:60:33,27:33:1188:27:968:-69.3756,0,-89.1668	0/1:32:14,18:14:504:18:644:-48.6576,0,-36.0651	1/1:99:0,99:0:0:99:3548:-319.528,-29.802,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:31:22,9:22:792:9:324:-20.1739,0,-62.2737	0/1:92:43,49:43:1544:49:1756:-130.629,0,-111.558	0/1:90:57,33:57:2048:33:1175:-78.9643,0,-157.499	1/1:99:0,99:0:0:99:3547:-319.438,-29.802,0	1/1:68:0,68:0:0:68:2439:-219.765,-20.47,0
chr03	23597258	.	G	A	75023.9	PASS	AB=0.494665;ABP=3.26515;AC=159;AF=0.845745;AN=188;AO=3327;CIGAR=1X;DP=3855;DPB=3855;DPRA=0;EPP=6892.72;EPPR=1098.02;GTI=0;LEN=1;MEANALT=1;MQM=56.1491;MQMR=56.2178;NS=94;NUMALT=1;ODDS=2.79242;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118851;QR=18929;RO=528;RPL=40;RPP=6884.24;RPPR=1098.02;RPR=3287;RUN=1;SAF=3326;SAP=7218.82;SAR=1;SRF=528;SRP=1149.55;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:10,11:10:360:11:396:-29.6511,0,-26.3404	1/1:52:0,52:0:0:52:1838:-165.515,-15.6536,0	0/1:58:28,30:28:1004:30:1076:-79.5957,0,-72.9156	1/1:74:0,74:0:0:74:2656:-238.527,-22.2762,0	1/1:34:0,34:0:0:34:1194:-107.21,-10.235,0	1/1:25:0,25:0:0:25:896:-80.8692,-7.52575,0	1/1:60:0,60:0:0:60:2122:-190.987,-18.0618,0	1/1:88:0,88:0:0:88:3126:-280.212,-26.4906,0	1/1:49:0,49:0:0:49:1741:-156.791,-14.7505,0	0/1:54:32,22:32:1148:22:792:-55.2174,0,-87.0487	1/1:11:0,11:0:0:11:396:-35.9568,-3.31133,0	1/1:25:0,25:0:0:25:900:-81.2859,-7.52575,0	1/1:21:0,21:0:0:21:752:-67.9882,-6.32163,0	1/1:21:0,21:0:0:21:756:-68.2579,-6.32163,0	1/1:20:0,20:0:0:20:720:-64.9977,-6.0206,0	1/1:26:0,26:0:0:26:932:-83.9635,-7.82678,0	0/1:17:6,11:6:216:11:387:-29.8793,0,-14.6675	1/1:22:0,22:0:0:22:792:-71.5789,-6.62266,0	0/1:9:4,5:4:144:5:176:-13.4717,0,-10.6006	1/1:58:0,58:0:0:58:2055:-184.877,-17.4597,0	1/1:71:0,71:0:0:71:2531:-226.742,-21.3731,0	1/1:64:0,64:0:0:64:2285:-205.51,-19.2659,0	1/1:51:0,51:0:0:51:1816:-163.316,-15.3525,0	1/1:60:0,60:0:0:60:2148:-192.366,-18.0618,0	1/1:61:0,61:0:0:61:2184:-196.664,-18.3628,0	0/1:162:84,78:84:3001:78:2749:-197.959,0,-221.009	1/1:123:0,123:0:0:123:4371:-392.791,-37.0267,0	0/1:9:4,5:4:144:5:180:-13.7561,0,-10.5962	1/1:74:0,74:0:0:74:2648:-238.219,-22.2762,0	1/1:59:3,56:3:108:56:2004:-170.155,-7.69039,0	1/1:42:0,42:0:0:42:1512:-135.439,-12.6433,0	0/1:5:2,3:2:72:3:108:-8.56523,0,-5.25654	0/1:13:6,7:6:212:7:244:-18.3762,0,-15.5032	1/1:2:0,2:0:0:2:72:-6.72407,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	1/1:5:0,5:0:0:5:176:-16.1813,-1.50515,0	1/1:76:0,76:0:0:76:2724:-245.004,-22.8783,0	1/1:141:0,141:0:0:141:5045:-453.751,-42.4452,0	0/1:20:12,8:12:432:8:284:-19.8064,0,-33.1864	1/1:6:0,6:0:0:6:216:-19.7719,-1.80618,0	0/1:44:26,18:26:936:18:644:-44.8815,0,-71.138	1/1:16:0,16:0:0:16:568:-51.3902,-4.81648,0	0/1:72:28,44:28:1008:44:1580:-119.895,0,-68.9818	0/1:17:10,7:10:360:7:252:-17.8948,0,-27.5186	1/1:18:0,18:0:0:18:642:-57.3985,-5.41854,0	1/1:67:0,67:0:0:67:2396:-215.534,-20.169,0	1/1:42:0,42:0:0:42:1486:-133.709,-12.6433,0	1/1:51:0,51:0:0:51:1832:-164.941,-15.3525,0	1/1:43:0,43:0:0:43:1548:-139.345,-12.9443,0	0/1:48:28,20:28:1008:20:716:-50.2742,0,-76.3937	1/1:74:0,74:0:0:74:2649:-238.225,-22.2762,0	1/1:5:0,5:0:0:5:180:-16.4546,-1.50515,0	0/1:63:37,26:37:1324:26:928:-64.8278,0,-100.327	1/1:13:0,13:0:0:13:468:-42.4463,-3.91339,0	0/1:5:2,3:2:72:3:108:-8.56773,0,-5.32966	0/1:37:20,17:20:716:17:612:-44.1377,0,-53.6009	0/1:30:18,12:18:644:12:428:-29.6321,0,-49.1346	1/1:4:0,4:0:0:4:144:-13.3099,-1.20412,0	0/1:10:5,5:5:180:5:180:-13.5297,0,-13.5371	1/1:39:0,39:0:0:39:1385:-124.754,-11.7402,0	1/1:62:1,61:1:36:61:2192:-193.174,-15.0682,0	1/1:8:0,8:0:0:8:288:-26.2485,-2.40824,0	1/1:70:0,70:0:0:70:2505:-225.38,-21.0721,0	1/1:82:1,81:1:36:81:2881:-254.82,-21.0888,0	1/1:39:0,39:0:0:39:1400:-125.984,-11.7402,0	1/1:32:0,32:0:0:32:1152:-103.832,-9.63296,0	1/1:92:1,91:1:36:91:3241:-287.745,-24.0991,0	0/1:70:48,22:48:1716:22:773:-48.6841,0,-133.299	1/1:12:0,12:0:0:12:428:-38.8122,-3.61236,0	1/1:24:0,24:0:0:24:864:-77.9228,-7.22472,0	1/1:53:0,53:0:0:53:1904:-171.446,-15.9546,0	1/1:15:0,15:0:0:15:525:-47.545,-4.51545,0	0/1:67:26,41:26:932:41:1449:-110.363,0,-63.8691	1/1:27:0,27:0:0:27:938:-84.6695,-8.12781,0	1/1:74:0,74:0:0:74:2637:-237.41,-22.2762,0	1/1:54:0,54:0:0:54:1944:-174.941,-16.2556,0	0/1:39:11,28:11:388:28:1004:-78.9108,0,-23.5084	1/1:24:0,24:0:0:24:864:-78.0588,-7.22472,0	0/1:8:3,5:3:108:5:176:-13.7025,0,-7.66411	0/1:54:20,34:20:720:34:1224:-94.0895,0,-48.7742	1/1:25:0,25:0:0:25:888:-80.202,-7.52575,0	1/1:111:0,111:0:0:111:3992:-358.617,-33.4143,0	1/1:44:0,44:0:0:44:1580:-141.821,-13.2453,0	0/1:18:12,6:12:432:6:212:-13.9942,0,-33.6637	0/1:18:11,7:11:396:7:252:-17.5938,0,-30.4537	1/1:41:0,41:0:0:41:1476:-132.844,-12.3422,0	1/1:26:0,26:0:0:26:936:-84.4232,-7.82678,0	1/1:32:0,32:0:0:32:1152:-103.817,-9.63296,0	1/1:26:1,25:1:36:25:896:-77.2685,-4.22851,0	0/1:14:4,10:4:140:10:356:-28.1528,0,-8.72478	0/1:30:14,16:14:504:16:564:-41.6577,0,-36.5776	0/1:19:10,9:10:360:9:324:-23.7535,0,-27.0011	1/1:26:0,26:0:0:26:936:-84.3312,-7.82678,0	1/1:31:0,31:0:0:31:1116:-100.584,-9.33193,0
chr03	23597280	.	G	T	8486.71	PASS	AB=0.50969;ABP=3.85196;AC=29;AF=0.154255;AN=188;AO=532;CIGAR=1X;DP=3848;DPB=3848;DPRA=0.973003;EPP=1158.23;EPPR=7201.44;GTI=1;LEN=1;MEANALT=1.0303;MQM=56.2049;MQMR=56.2268;NS=94;NUMALT=1;ODDS=1.62701;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=18867;QR=118480;RO=3315;RPL=532;RPP=1158.23;RPPR=7201.44;RPR=0;RUN=1;SAF=532;SAP=1158.23;SAR=0;SRF=3315;SRP=7201.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:12,9:12:432:9:324:-23.1065,0,-32.8886	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.297	0/1:56:27,29:27:960:29:1036:-76.4353,0,-69.8148	0/0:77:77,0:77:2755:0:0:0,-23.1793,-247.52	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.104	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.7542	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.459	0/0:85:85,0:85:3033:0:0:0,-25.5875,-272.491	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.269	0/1:54:20,34:20:720:34:1200:-91.7202,0,-48.7428	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5955	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7011	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9882	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.4948	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.1656	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.0031	0/1:17:11,6:11:396:6:208:-13.9371,0,-30.8552	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8623	0/1:9:5,4:5:176:4:136:-9.86366,0,-13.4717	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.279	0/0:67:67,0:67:2389:0:0:0,-20.169,-214.11	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.007	0/0:50:50,0:50:1745:0:0:0,-15.0515,-157.103	0/0:58:58,0:58:2052:0:0:0,-17.4597,-184.159	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.069	0/1:163:78,85:78:2788:85:3031:-223.397,0,-200.575	0/0:121:121,0:121:4324:0:0:0,-36.4246,-388.59	0/1:9:5,4:5:180:4:140:-10.2292,0,-13.7561	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.617	0/0:61:58,3:58:2072:3:108:0,-8.29245,-176.264	0/0:42:42,0:42:1488:0:0:0,-12.6433,-133.277	0/1:4:3,1:3:108:1:36:-2.39244,0,-8.86626	0/1:14:8,6:8:288:6:216:-15.5673,0,-22.0393	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.72407	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5484	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.311	0/0:142:142,0:142:5088:0:0:0,-42.7463,-457.618	0/1:22:9,13:9:309:13:468:-35.8219,0,-21.4412	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7719	0/1:46:18,28:18:629:28:974:-73.8773,0,-42.9241	0/0:16:16,0:16:558:0:0:0,-4.81648,-50.476	0/1:70:44,26:44:1584:26:924:-62.2999,0,-120.856	0/1:16:6,10:6:216:10:360:-27.8196,0,-14.9598	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.4251	0/0:68:68,0:68:2444:0:0:0,-20.47,-219.794	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.621	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.177	0/0:43:43,0:43:1544:0:0:0,-12.9443,-138.986	0/1:48:20,28:20:716:28:1000:-75.6755,0,-50.2742	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.352	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4546	0/1:64:26,38:26:928:38:1359:-103.17,0,-64.5268	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4463	0/1:5:3,2:3:108:2:72:-5.32966,0,-8.56773	0/1:38:16,22:16:576:22:777:-58.78,0,-40.6681	0/1:31:12,19:12:432:19:658:-50.0874,0,-29.6921	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3099	0/1:9:4,5:4:144:5:180:-13.8382,0,-10.5932	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.464	0/0:60:59,1:59:2104:1:36:0,-14.4661,-185.699	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1225	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.615	0/0:81:80,1:80:2833:1:32:0,-21.1852,-251.567	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.105	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.473	0/0:93:92,1:92:3296:1:36:0,-24.4001,-292.251	0/1:71:22,49:22:792:49:1721:-133.445,0,-50.0956	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1339	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.1563	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.396	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9012	0/1:66:40,26:40:1432:26:932:-64.1012,0,-109.206	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.106	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.386	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.226	0/1:37:27,10:27:949:10:348:-20.5095,0,-74.5621	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4605	0/1:7:5,2:5:176:2:72:-4.7276,0,-14.0036	0/1:55:35,20:35:1260:20:712:-47.754,0,-97.0254	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.0546	0/0:110:110,0:110:3960:0:0:0,-33.1133,-355.738	0/0:44:44,0:44:1568:0:0:0,-13.2453,-140.746	0/1:18:6,12:6:216:12:424:-32.9417,0,-14.3585	0/1:18:7,10:7:252:10:351:-26.4803,0,-17.6662	0/0:41:41,0:41:1464:0:0:0,-12.3422,-131.772	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.1856	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.694	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4246	0/1:14:10,4:10:360:4:144:-9.09287,0,-28.515	0/1:31:17,14:17:603:14:496:-35.5939,0,-44.8537	0/1:19:9,10:9:324:10:356:-26.6395,0,-23.7535	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.3312	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.751
chr03	23609825	.	G	T	16288.3	PASS	AB=0.436711;ABP=88.4914;AC=31;AF=0.164894;AN=188;AO=1084;CIGAR=1X;DP=9868;DPB=9868;DPRA=0.900611;EPP=2356.89;EPPR=19059.9;GTI=4;LEN=1;MEANALT=1.07317;MQM=59.9465;MQMR=59.9945;NS=94;NUMALT=1;ODDS=1.98572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38334;QR=311521;RO=8776;RPL=0;RPP=2356.89;RPPR=19051.2;RPR=1084;RUN=1;SAF=0;SAP=2356.89;SAR=1084;SRF=1;SRP=19051.2;SRR=8775;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:14,21:14:491:21:756:-57.8312,0,-33.9851	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/1:156:95,61:95:3317:61:2165:-148.154,0,-251.785	0/0:298:298,0:298:10609:0:0:0,-89.7069,-954.726	0/0:87:87,0:87:3086:0:0:0,-26.1896,-277.969	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/0:215:214,0:214:7539:0:0:0,-64.4204,-678.199	0/0:121:121,0:121:4295:0:0:0,-36.4246,-386.728	0/1:83:38,45:38:1355:45:1586:-118.041,0,-97.2642	0/0:42:42,0:42:1480:0:0:0,-12.6433,-133.494	0/0:120:120,0:120:4261:0:0:0,-36.1236,-383.67	0/0:89:88,1:88:3089:1:36:0,-23.1934,-274.639	0/0:63:63,0:63:2203:0:0:0,-18.9649,-198.533	0/0:104:104,0:104:3717:0:0:0,-31.3071,-334.73	0/0:74:74,0:74:2592:0:0:0,-22.2762,-233.529	0/1:34:15,19:15:536:19:670:-50.391,0,-38.3398	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:43:18,25:18:622:25:896:-68.0161,0,-43.3578	0/0:217:215,1:215:7650:1:36:0,-61.784,-684.94	0/0:211:211,0:211:7434:0:0:0,-63.5173,-669.11	0/0:192:191,1:191:6805:1:36:0,-54.1995,-608.926	0/0:96:95,1:95:3392:1:36:0,-25.3006,-301.898	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/0:126:126,0:126:4440:0:0:0,-37.9298,-399.773	0/1:257:144,113:144:5114:113:4025:-285.074,0,-383.021	0/0:309:309,0:309:11019:0:0:0,-93.0183,-991.607	0/1:36:12,23:12:432:23:816:-62.8661,0,-28.3253	0/0:323:323,0:323:11463:0:0:0,-97.2327,-1031.55	0/0:56:55,1:55:1937:1:36:0,-13.2594,-170.983	0/0:122:122,0:122:4353:0:0:0,-36.7257,-391.944	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:39:27,12:27:959:12:432:-27.481,0,-74.8852	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:28:28,0:28:984:0:0:0,-8.42884,-88.8707	0/0:240:238,0:238:8427:0:0:0,-71.6451,-758.079	0/0:160:158,2:158:5600:2:72:0,-41.3281,-497.287	0/1:34:18,16:18:631:16:568:-41.2168,0,-46.8807	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:118:69,49:69:2468:49:1707:-118.387,0,-186.853	0/0:42:41,1:41:1472:1:36:0,-9.04498,-129.178	0/1:190:132,58:132:4684:58:2019:-124.772,0,-364.527	0/1:43:22,21:22:779:21:748:-54.701,0,-57.4878	0/0:64:64,0:64:2269:0:0:0,-19.2659,-204.471	0/0:167:167,0:167:5909:0:0:0,-50.272,-531.921	0/0:177:176,0:176:6245:0:0:0,-52.9813,-561.788	0/0:292:291,1:291:10301:1:36:0,-84.3025,-923.416	0/0:95:95,0:95:3399:0:0:0,-28.5978,-306.124	0/1:92:64,28:64:2270:28:1004:-62.9673,0,-176.864	0/0:173:173,0:173:6200:0:0:0,-52.0782,-558.096	0/1:21:19,2:19:684:2:72:-0.515093,0,-55.5687	0/1:155:96,59:96:3416:59:2109:-143.417,0,-260.994	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:145:90,54:90:3210:54:1893:-126.936,0,-245.414	0/1:67:31,36:31:1103:36:1282:-95.5134,0,-79.4108	0/1:8:6,2:6:201:2:72:-4.42848,0,-16.0088	0/1:12:7,5:7:243:5:161:-11.1942,0,-18.5951	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/0:112:112,0:112:3947:0:0:0,-33.7154,-355.425	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:255:255,0:255:9008:0:0:0,-76.7626,-810.704	0/0:220:220,0:220:7817:0:0:0,-66.2266,-703.563	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.92	0/0:212:211,1:211:7504:1:36:0,-60.2201,-671.808	0/1:126:57,69:57:2019:69:2440:-181.924,0,-144.053	0/0:24:24,0:24:806:0:0:0,-7.22472,-72.8478	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/1:160:88,72:88:3143:72:2561:-182.574,0,-234.931	0/0:126:126,0:126:4510:0:0:0,-37.9298,-406.067	0/0:73:73,0:73:2595:0:0:0,-21.9752,-233.799	0/0:218:218,0:218:7788:0:0:0,-65.6245,-700.95	0/1:113:66,47:66:2355:47:1657:-115.399,0,-178.192	0/0:112:112,0:112:3990:0:0:0,-33.7154,-359.291	0/1:16:10,6:10:356:6:201:-13.6006,0,-27.5648	0/1:111:71,40:71:2515:40:1432:-95.7633,0,-193.186	0/0:135:135,0:135:4766:0:0:0,-40.639,-429.098	0/0:239:238,1:238:8441:1:36:0,-68.3479,-756.101	0/0:72:72,0:72:2558:0:0:0,-21.6742,-230.47	0/1:89:44,45:44:1572:45:1580:-115.697,0,-114.98	0/1:54:31,23:31:1090:23:805:-56.5129,0,-82.1523	0/0:149:149,0:149:5237:0:0:0,-44.8535,-471.469	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:76:76,0:76:2679:0:0:0,-22.8783,-241.354	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/1:46:20,26:20:716:26:924:-69.6303,0,-50.9203	0/1:69:41,28:41:1442:28:975:-67.2804,0,-109.303	0/1:85:26,59:26:932:59:2058:-159.899,0,-58.6113	0/0:187:187,0:187:6659:0:0:0,-56.2926,-599.389	0/0:98:97,0:97:3446:0:0:0,-29.1999,-309.994
chr03	23609844	.	C	G	23273.6	PASS	AB=0.43745;ABP=88.3085;AC=30;AF=0.159574;AN=188;AO=1108;CIGAR=1X;DP=10049;DPB=10049;DPRA=0.872866;EPP=76.7698;EPPR=198.925;GTI=2;LEN=1;MEANALT=1.05;MQM=59.963;MQMR=59.9947;NS=94;NUMALT=1;ODDS=1.21589;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39381;QR=320431;RO=8938;RPL=457;RPP=76.7698;RPPR=198.925;RPR=651;RUN=1;SAF=0;SAP=2409;SAR=1108;SRF=2;SRP=19394.3;SRR=8936;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:16,24:16:576:24:856:-65.3199,0,-40.1338	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:159:97,61:97:3467:61:2145:-145.393,0,-264.319	0/0:305:305,0:305:10951:0:0:0,-91.8141,-985.481	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:221:221,0:221:7920:0:0:0,-66.5276,-712.823	0/0:117:117,0:117:4147:0:0:0,-35.2205,-373.412	0/1:85:38,47:38:1355:47:1682:-126.08,0,-96.6622	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/0:89:88,1:88:3168:1:36:0,-23.1934,-281.744	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/0:108:108,0:108:3884:0:0:0,-32.5112,-349.753	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/1:38:15,23:15:540:23:824:-63.0442,0,-37.4974	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:42:18,24:18:630:24:860:-65.0786,0,-44.3814	0/0:220:219,1:219:7868:1:36:0,-62.6283,-704.545	0/0:214:214,0:214:7668:0:0:0,-64.4204,-690.152	0/0:198:197,1:197:7072:1:36:0,-56.0057,-632.939	0/0:98:97,1:97:3464:1:21:0,-27.401,-309.873	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.451	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.846	0/1:263:148,115:148:5296:115:4099:-289.926,0,-397.604	0/0:313:313,0:313:11252:0:0:0,-94.2224,-1012.56	0/1:37:13,24:13:468:24:856:-66.223,0,-31.3215	0/0:324:323,0:323:11590:0:0:0,-97.2327,-1042.6	0/0:55:54,1:54:1923:1:32:0,-13.3573,-169.919	0/0:126:126,0:126:4536:0:0:0,-37.9298,-408.404	0/1:10:6,4:6:216:4:136:-9.56524,0,-16.7802	0/1:40:28,12:28:1004:12:428:-26.8176,0,-78.6347	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:244:244,0:244:8753:0:0:0,-73.4513,-787.755	0/0:163:161,1:161:5788:1:36:0,-45.5284,-517.433	0/1:34:19,15:19:684:15:525:-37.343,0,-51.6553	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:123:73,50:73:2620:50:1760:-121.655,0,-199.01	0/0:43:42,1:42:1512:1:36:0,-9.34601,-132.776	0/1:195:136,59:136:4864:59:2100:-130.558,0,-379.213	0/1:43:22,21:22:792:21:752:-55.062,0,-58.6614	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:171:171,0:171:6132:0:0:0,-51.4761,-551.979	0/0:177:177,0:177:6360:0:0:0,-53.2823,-572.487	0/0:297:297,0:297:10651:0:0:0,-89.4059,-958.488	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:92:65,27:65:2336:27:958:-58.841,0,-182.804	0/0:177:177,0:177:6352:0:0:0,-53.2823,-571.769	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/1:161:100,61:100:3588:61:2147:-145.022,0,-274.66	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:145:92,53:92:3296:53:1895:-127.178,0,-253.21	0/1:68:31,37:31:1116:37:1323:-98.9013,0,-80.2817	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.824	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:255:255,0:255:9149:0:0:0,-76.7626,-823.378	0/0:224:224,0:224:8024:0:0:0,-67.4307,-722.177	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:133:133,0:133:4767:0:0:0,-40.037,-429.186	0/0:215:214,1:214:7656:1:36:0,-61.1232,-685.476	0/1:133:61,72:61:2192:72:2566:-191.153,0,-157.508	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:162:89,73:89:3188:73:2584:-184.043,0,-238.377	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.725	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.874	0/0:223:223,0:223:7967:0:0:0,-67.1297,-717.052	0/1:118:71,47:71:2540:47:1656:-113.804,0,-193.33	0/0:112:111,1:111:3980:1:36:0,-30.1171,-354.792	0/1:16:10,6:10:360:6:212:-14.6083,0,-27.9278	0/1:110:71,39:71:2552:39:1395:-92.735,0,-196.817	0/0:136:136,0:136:4872:0:0:0,-40.9401,-438.633	0/0:243:242,1:242:8667:1:36:0,-69.552,-776.424	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:92:46,46:46:1643:46:1644:-120.554,0,-120.463	0/1:56:33,23:33:1184:23:820:-57.2648,0,-90.0106	0/0:152:152,0:152:5452:0:0:0,-45.7566,-490.807	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.174	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:49:20,29:20:720:29:1029:-78.1727,0,-50.3783	0/1:71:45,26:45:1612:26:936:-63.1165,0,-123.997	0/1:98:30,68:30:1080:68:2420:-188.556,0,-68.0123	0/0:190:190,0:190:6815:0:0:0,-57.1957,-613.419	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649
chr03	23646296	.	CC	GC,GT	249569	PASS	AB=0.494639,0.504324;ABP=3.73212,3.47975;AC=157,29;AF=0.844086,0.155914;AN=186;AO=9742,1477;CIGAR=1X1M,2X;DP=11239;DPB=11239.5;DPRA=0,1.01133;EPP=21157.5,3210.28;EPPR=5.18177;GTI=3;LEN=1,2;MEANALT=1.5914,2.15385;MQM=59.9469,59.6222;MQMR=60;NS=93;NUMALT=2;ODDS=5.48158;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=348284,52270;QR=36;RO=1;RPL=9742,1477;RPP=21157.5,3210.28;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=21157.5,3210.28;SAR=9742,1477;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:45:0,20,25:0:0:20,25:720,886:-131.218,-72.4754,-66.4548,-59.1,0,-51.5742	1/1:184:0,183,1:0:0:183,1:6549,36:-589.122,-55.0885,0,-586.184,-51.7912,-585.883	1/2:91:0,29,62:0:0:29,62:1040,2175:-260.786,-175.957,-167.227,-85.1845,0,-66.5206	1/1:174:0,173,0:0:0:173,0:6204,0:-558.195,-52.0782,0,-558.195,-52.0782,-558.195	1/1:90:0,90,0:0:0:90,0:3192,0:-287.504,-27.0927,0,-287.504,-27.0927,-287.504	1/1:84:0,84,0:0:0:84,0:2992,0:-269.214,-25.2865,0,-269.214,-25.2865,-269.214	1/1:139:0,139,0:0:0:139,0:4955,0:-446.096,-41.8432,0,-446.096,-41.8432,-446.096	1/1:166:0,166,0:0:0:166,0:5948,0:-535.427,-49.971,0,-535.427,-49.971,-535.427	1/1:122:0,122,0:0:0:122,0:4356,0:-392.205,-36.7257,0,-392.205,-36.7257,-392.205	1/2:164:0,82,82:0:0:82,82:2936,2910:-476.874,-237.441,-212.757,-239.79,0,-215.105	1/1:89:0,89,0:0:0:89,0:3178,0:-286.242,-26.7917,0,-286.242,-26.7917,-286.242	1/1:114:0,114,0:0:0:114,0:4076,0:-367.026,-34.3174,0,-367.026,-34.3174,-367.026	1/1:141:0,140,1:0:0:140,1:5016,36:-451.227,-42.1442,0,-448.289,-38.847,-447.988	1/1:126:0,125,0:0:0:125,0:4455,0:-400.866,-37.6288,0,-400.866,-37.6288,-400.866	1/1:111:0,111,0:0:0:111,0:3975,0:-357.94,-33.4143,0,-357.94,-33.4143,-357.94	1/1:94:0,94,0:0:0:94,0:3352,0:-301.897,-28.2968,0,-301.897,-28.2968,-301.897	1/2:92:0,57,35:0:0:57,35:2048,1239:-268.343,-101.266,-84.107,-167.433,0,-156.897	1/1:100:0,100,0:0:0:100,0:3571,0:-321.598,-30.103,0,-321.598,-30.103,-321.598	1/2:59:0,42,17:0:0:42,17:1512,581:-170.876,-47.4919,-34.8486,-123.731,0,-118.614	1/1:223:0,220,0:0:0:220,0:7863,0:-707.388,-66.2266,0,-707.388,-66.2266,-707.388	1/1:131:0,130,0:0:0:130,0:4643,0:-417.671,-39.1339,0,-417.671,-39.1339,-417.671	1/1:116:0,115,0:0:0:115,0:4128,0:-371.339,-34.6185,0,-371.339,-34.6185,-371.339	1/1:125:0,125,0:0:0:125,0:4468,0:-402.291,-37.6288,0,-402.291,-37.6288,-402.291	1/1:202:0,202,0:0:0:202,0:7226,0:-650.343,-60.8081,0,-650.343,-60.8081,-650.343	1/1:108:0,108,0:0:0:108,0:3853,0:-346.962,-32.5112,0,-346.962,-32.5112,-346.962	1/2:345:0,163,181:0:0:163,181:5856,6381:-996.279,-518.554,-469.486,-477.87,0,-423.383	1/1:171:1,170,0:1:36:170,0:6056,0:-541.374,-47.8779,0,-541.676,-51.1751,-544.613	1/2:47:0,28,19:0:0:28,19:1008,638:-134.275,-52.0126,-43.5838,-82.6075,0,-76.8879	1/1:212:0,209,2:0:0:209,2:7508,72:-675.398,-62.9153,0,-669.523,-57.0404,-668.921	1/1:208:0,199,8:0:0:199,8:7068,275:-635.851,-59.905,0,-613.52,-37.4991,-611.112	1/1:126:0,126,0:0:0:126,0:4506,0:-405.707,-37.9298,0,-405.707,-37.9298,-405.707	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:5:0,2,3:0:0:2,3:72,106:-14.8611,-8.98601,-8.38395,-6.2322,0,-5.32911	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:306:0,306,0:0:0:306,0:10946,0:-985.037,-92.1152,0,-985.037,-92.1152,-985.037	1/1:202:0,199,0:0:0:199,0:7132,0:-641.577,-59.905,0,-641.577,-59.905,-641.577	1/2:77:0,46,31:0:0:46,31:1652,1103:-224.894,-90.1299,-76.2825,-135.121,0,-125.789	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:139:0,72,67:0:0:72,67:2559,2410:-405.507,-196.982,-175.308,-208.882,0,-188.713	1/1:53:0,53,0:0:0:53,0:1896,0:-170.918,-15.9546,0,-170.918,-15.9546,-170.918	1/2:153:0,86,67:0:0:86,67:3069,2344:-441.216,-191.025,-165.137,-250.544,0,-230.375	1/2:105:0,48,57:0:0:48,57:1728,2015:-305.46,-164.461,-150.012,-141.356,0,-124.197	1/1:135:0,135,0:0:0:135,0:4841,0:-435.843,-40.6391,0,-435.843,-40.6391,-435.843	1/1:131:0,131,0:0:0:131,0:4681,0:-421.404,-39.4349,0,-421.404,-39.4349,-421.404	1/1:141:0,141,0:0:0:141,0:5033,0:-453.038,-42.4452,0,-453.038,-42.4452,-453.038	1/1:240:0,240,0:0:0:240,0:8525,0:-767.255,-72.2472,0,-767.255,-72.2472,-767.255	1/1:168:0,168,0:0:0:168,0:5987,0:-538.938,-50.573,0,-538.938,-50.573,-538.938	1/2:128:0,65,63:0:0:65,63:2305,2222:-369.06,-181.275,-161.708,-188.138,0,-169.173	1/1:139:0,139,0:0:0:139,0:4992,0:-449.426,-41.8432,0,-449.426,-41.8432,-449.426	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:133:0,58,74:0:0:58,74:2076,2644:-384.81,-215.554,-198.094,-169.254,0,-146.978	1/1:85:0,85,0:0:0:85,0:3041,0:-273.919,-25.5876,0,-273.919,-25.5876,-273.919	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:125:0,60,64:0:0:60,64:2140,2230:-355.743,-181.335,-163.273,-174.402,0,-155.136	1/2:58:0,35,23:0:0:35,23:1256,818:-16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chr03	23646340	.	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chr03	23678245	.	C	G	182998	PASS	AB=0.481513;ABP=9.99537;AC=156;AF=0.829787;AN=188;AO=6588;CIGAR=1X;DP=7824;DPB=7824;DPRA=84.1183;EPP=14291.3;EPPR=2658.75;GTI=2;LEN=1;MEANALT=1.05376;MQM=59.8764;MQMR=59.9854;NS=94;NUMALT=1;ODDS=1.35148;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233977;QR=43689;RO=1231;RPL=3307;RPP=3.23312;RPPR=41.1284;RPR=3281;RUN=1;SAF=3305;SAP=3.16983;SAR=3283;SRF=540;SRP=43.231;SRR=691;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:24,14:24:860:14:500:-33.8961,0,-66.2827	1/1:95:0,94:0:0:94:3367:-302.885,-28.2968,0	0/1:94:46,48:46:1624:48:1701:-125.075,0,-118.149	1/1:113:0,113:0:0:113:4036:-363.422,-34.0164,0	1/1:31:0,31:0:0:31:1061:-95.7921,-9.33193,0	1/1:33:0,33:0:0:33:1156:-104.342,-9.93399,0	1/1:88:0,88:0:0:88:3140:-282.817,-26.4906,0	1/1:74:0,74:0:0:74:2643:-238.115,-22.2762,0	1/1:65:1,64:1:36:64:2288:-202.582,-15.9687,0	0/1:64:28,36:28:1004:36:1288:-96.9577,0,-71.4099	1/1:137:0,137:0:0:137:4851:-436.74,-41.2411,0	1/1:140:0,140:0:0:140:4964:-446.903,-42.1442,0	1/1:122:0,122:0:0:122:4316:-388.606,-36.7257,0	1/1:165:0,165:0:0:165:5810:-523.012,-49.67,0	1/1:108:0,108:0:0:108:3807:-342.825,-32.5112,0	0/1:119:65,54:65:2307:54:1882:-133.83,0,-172.068	0/1:163:81,82:81:2886:82:2857:-208.295,0,-210.908	1/1:136:0,136:0:0:136:4844:-436.088,-40.9401,0	0/1:107:55,52:55:1930:52:1860:-135.455,0,-141.763	1/1:108:0,108:0:0:108:3836:-345.431,-32.5112,0	1/1:79:0,79:0:0:79:2828:-254.748,-23.7814,0	1/1:28:0,28:0:0:28:1004:-90.675,-8.42884,0	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	1/1:50:0,49:0:0:49:1749:-157.285,-14.7505,0	1/1:48:0,48:0:0:48:1711:-154.273,-14.4494,0	0/1:137:67,70:67:2378:70:2490:-183.11,0,-173.034	1/1:137:0,137:0:0:137:4893:-440.511,-41.2411,0	0/1:57:35,22:35:1243:22:784:-53.7221,0,-95.0152	1/1:111:0,111:0:0:111:3966:-357.128,-33.4143,0	1/1:59:2,57:2:68:57:2044:-177.769,-11.3031,0	1/1:67:0,67:0:0:67:2396:-215.895,-20.169,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:1,6:1:36:6:207:-16.8597,0,-1.49106	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:14:0,14:0:0:14:477:-43.2522,-4.21442,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:323:0,323:0:0:323:11480:-1033.07,-97.2327,0	1/1:43:0,43:0:0:43:1534:-138.352,-12.9443,0	0/1:156:92,64:92:3264:64:2251:-155.889,0,-247.02	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:76:23,53:23:811:53:1887:-147.226,0,-50.4317	1/1:89:0,89:0:0:89:3165:-285.066,-26.7917,0	0/1:61:25,36:25:892:36:1275:-96.6886,0,-62.2369	0/1:130:64,66:64:2270:66:2336:-171.362,0,-165.428	1/1:120:0,120:0:0:120:4218:-379.798,-36.1236,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:51:0,51:0:0:51:1815:-163.593,-15.3525,0	1/1:66:0,66:0:0:66:2352:-211.939,-19.868,0	1/1:76:0,76:0:0:76:2704:-243.602,-22.8783,0	0/1:70:31,39:31:1108:39:1382:-103.605,0,-78.8891	1/1:112:0,111:0:0:111:3950:-355.328,-33.4143,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:48:28,20:28:993:20:720:-50.6784,0,-75.2331	1/1:26:0,26:0:0:26:928:-83.837,-7.82678,0	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	0/1:51:34,17:34:1177:17:595:-38.5242,0,-90.8769	0/1:28:20,8:20:704:8:284:-17.4721,0,-55.2557	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:62:0,62:0:0:62:2202:-198.444,-18.6639,0	1/1:219:1,218:1:36:218:7754:-694.252,-62.3273,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:46:1,45:1:36:45:1598:-140.509,-10.2491,0	1/1:105:2,103:2:68:103:3680:-324.711,-25.1504,0	1/1:36:0,36:0:0:36:1284:-115.862,-10.8371,0	1/1:32:0,32:0:0:32:1133:-102.145,-9.63296,0	1/1:79:0,79:0:0:79:2809:-253.041,-23.7814,0	0/1:64:37,27:37:1316:27:960:-67.448,0,-99.4759	1/1:63:1,62:1:36:62:2215:-195.946,-15.3666,0	1/1:34:0,34:0:0:34:1209:-109.114,-10.235,0	1/1:160:1,159:1:36:159:5656:-505.47,-44.5665,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:42:24,18:24:856:18:644:-45.6473,0,-64.7178	1/1:37:0,37:0:0:37:1332:-120.177,-11.1381,0	1/1:155:0,155:0:0:155:5492:-494.335,-46.6597,0	1/1:101:0,101:0:0:101:3589:-323.192,-30.404,0	0/1:72:39,33:39:1374:33:1175:-84.3828,0,-102.283	1/1:74:0,74:0:0:74:2627:-236.676,-22.2762,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:55:26,29:26:932:29:1031:-76.546,0,-67.6422	1/1:57:0,57:0:0:57:2035:-183.42,-17.1587,0	1/1:154:0,154:0:0:154:5453:-490.894,-46.3586,0	1/1:181:1,180:1:36:180:6381:-570.765,-50.8886,0	0/1:109:50,59:50:1779:59:2098:-156.276,0,-127.58	0/1:161:86,74:86:3066:74:2631:-188.495,0,-227.644	1/1:231:0,230:0:0:230:8128:-731.128,-69.2369,0	1/1:63:0,63:0:0:63:2238:-201.682,-18.9649,0	1/1:141:0,141:0:0:141:4992:-449.425,-42.4452,0	1/1:131:0,131:0:0:131:4666:-420.1,-39.4349,0	0/1:142:57,85:57:2010:85:3043:-231.327,0,-138.424	0/1:159:90,69:90:3200:69:2475:-175.134,0,-240.358	0/1:117:80,37:80:2849:37:1293:-81.4462,0,-221.426	1/1:72:1,71:1:36:71:2515:-223.002,-18.0759,0	1/1:221:0,221:0:0:221:7839:-705.53,-66.5276,0
chr03	23678263	.	C	A	181190	PASS	AB=0.48137;ABP=10.0492;AC=156;AF=0.829787;AN=188;AO=6497;CIGAR=1X;DP=7732;DPB=7732;DPRA=83.129;EPP=3.02668;EPPR=46.2549;GTI=2;LEN=1;MEANALT=1.10753;MQM=59.8664;MQMR=59.9861;NS=94;NUMALT=1;ODDS=1.29844;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=231562;QR=43009;RO=1222;RPL=6493;RPP=14076.3;RPPR=2613.3;RPR=4;RUN=1;SAF=3248;SAP=3.01063;SAR=3249;SRF=530;SRP=49.6454;SRR=692;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:23,14:23:812:14:504:-34.5591,0,-62.2628	1/1:92:0,92:0:0:92:3281:-295.509,-27.6948,0	0/1:95:48,47:48:1696:47:1692:-123.913,0,-124.326	1/1:112:0,111:0:0:111:3972:-357.345,-33.4143,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:32:0,32:0:0:32:1131:-102.096,-9.63296,0	1/1:86:0,86:0:0:86:3045:-274.274,-25.8886,0	1/1:75:0,75:0:0:75:2652:-238.924,-22.5773,0	1/1:63:1,62:1:36:62:2216:-196.105,-15.3666,0	0/1:63:26,37:26:885:37:1320:-100.137,0,-60.9922	1/1:139:0,139:0:0:139:4954:-446.004,-41.8432,0	1/1:143:0,142:0:0:142:5044:-453.743,-42.7463,0	1/1:119:0,119:0:0:119:4245:-382.219,-35.8226,0	1/1:162:1,161:1:32:161:5713:-511.085,-45.5675,0	1/1:107:0,107:0:0:107:3807:-342.829,-32.2102,0	0/1:120:66,54:66:2336:54:1932:-138.031,0,-174.377	0/1:158:81,77:81:2891:77:2721:-197.569,0,-212.863	1/1:131:0,129:0:0:129:4603:-414.072,-38.8329,0	0/1:109:57,52:57:2005:52:1860:-134.832,0,-147.91	1/1:106:0,106:0:0:106:3789:-341.206,-31.9092,0	1/1:79:0,79:0:0:79:2789:-251.251,-23.7814,0	1/1:28:0,28:0:0:28:1000:-90.3145,-8.42884,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	1/1:52:0,51:0:0:51:1828:-164.392,-15.3525,0	1/1:46:0,46:0:0:46:1619:-145.996,-13.8474,0	0/1:131:62,69:62:2211:69:2472:-183.298,0,-159.819	1/1:136:0,136:0:0:136:4832:-435.029,-40.9401,0	0/1:57:35,22:35:1238:22:780:-53.3612,0,-94.5642	1/1:112:0,112:0:0:112:4012:-361.266,-33.7154,0	1/1:57:2,55:2:72:55:1955:-169.383,-10.322,0	1/1:67:0,66:0:0:66:2344:-210.855,-19.868,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:11:0,11:0:0:11:392:-35.6197,-3.31133,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:313:0,313:0:0:313:11161:-1004.37,-94.2224,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	0/1:154:91,63:91:3198:63:2247:-156.133,0,-241.685	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:75:23,52:23:799:52:1856:-144.738,0,-49.6503	1/1:87:0,87:0:0:87:3108:-279.94,-26.1896,0	0/1:63:26,37:26:911:37:1320:-100.136,0,-63.3401	0/1:132:64,67:64:2233:67:2403:-176.706,0,-161.437	1/1:119:0,119:0:0:119:4226:-379.812,-35.8226,0	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	1/1:52:0,52:0:0:52:1868:-168.362,-15.6536,0	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	1/1:73:0,73:0:0:73:2596:-233.887,-21.9752,0	0/1:70:31,39:31:1095:39:1387:-104.054,0,-77.7577	1/1:109:0,109:0:0:109:3870:-348.495,-32.8123,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:43:24,19:24:835:19:684:-48.9451,0,-62.5222	1/1:26:0,26:0:0:26:932:-84.197,-7.82678,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:50:33,17:33:1167:17:604:-39.6391,0,-90.2849	0/1:29:20,9:20:690:9:316:-20.0466,0,-53.6895	0/1:5:1,4:1:36:4:142:-11.6241,0,-2.09312	0/1:8:2,6:2:68:6:207:-16.5587,0,-4.04947	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	1/1:210:1,209:1:36:209:7455:-667.355,-59.618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:47:1,46:1:36:46:1638:-144.108,-10.5501,0	1/1:105:2,103:2:72:103:3641:-320.864,-24.7714,0	1/1:36:0,36:0:0:36:1280:-115.502,-10.8371,0	1/1:30:0,30:0:0:30:1068:-96.3727,-9.0309,0	1/1:76:0,76:0:0:76:2695:-242.781,-22.8783,0	0/1:65:38,27:38:1331:27:951:-66.335,0,-100.522	1/1:65:1,64:1:36:64:2266:-200.534,-15.9687,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:159:1,158:1:36:158:5643:-504.35,-44.2655,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:41:23,18:23:820:18:644:-45.9484,0,-61.7803	1/1:34:0,34:0:0:34:1224:-110.466,-10.235,0	1/1:153:0,153:0:0:153:5474:-492.688,-46.0576,0	1/1:103:0,103:0:0:103:3678:-331.213,-31.0061,0	0/1:68:37,31:37:1290:31:1103:-79.1098,0,-95.9293	1/1:73:0,73:0:0:73:2611:-235.237,-21.9752,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:54:26,28:26:911:28:1004:-74.4202,0,-66.0493	1/1:59:0,58:0:0:58:2061:-185.363,-17.4597,0	1/1:156:0,156:0:0:156:5545:-499.174,-46.9607,0	1/1:177:0,175:0:0:175:6246:-561.849,-52.6803,0	0/1:109:50,59:50:1771:59:2088:-155.377,0,-126.86	0/1:161:86,75:86:2995:75:2667:-191.81,0,-221.313	1/1:233:1,232:1:36:232:8288:-742.195,-66.5417,0	1/1:63:0,63:0:0:63:2242:-202.042,-18.9649,0	1/1:139:0,137:0:0:137:4891:-439.953,-41.2411,0	1/1:130:0,130:0:0:130:4635:-417.31,-39.1339,0	0/1:141:57,83:57:1966:83:2963:-224.394,0,-134.708	0/1:162:91,71:91:3219:71:2523:-178.547,0,-241.168	0/1:115:79,36:79:2812:36:1288:-81.5684,0,-218.702	1/1:55:1,54:1:36:54:1936:-170.916,-12.9584,0	1/1:224:0,224:0:0:224:8010:-720.909,-67.4307,0
chr03	23679331	.	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chr03	23709980	.	G	C	123574	PASS	AB=0.42738;ABP=96.3644;AC=156;AF=0.83871;AN=186;AO=5614;CIGAR=1X;DP=6795;DPB=6795;DPRA=0;EPP=12158.9;EPPR=2558.83;GTI=0;LEN=1;MEANALT=1.04301;MQM=59.7366;MQMR=33.2897;NS=93;NUMALT=1;ODDS=1.29297;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200764;QR=42095;RO=1177;RPL=0;RPP=12193.7;RPPR=2558.83;RPR=5614;RUN=1;SAF=5610;SAP=12158.9;SAR=4;SRF=1177;SRP=2558.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:34,4:34:1224:4:144:-1.87448,0,-85.9568	1/1:39:0,39:0:0:39:1370:-122.968,-11.7402,0	0/1:127:74,53:74:2641:53:1900:-132.976,0,-176.235	1/1:188:0,188:0:0:188:6703:-603.345,-56.5936,0	1/1:17:0,17:0:0:17:612:-54.525,-5.11751,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:77:0,77:0:0:77:2756:-248.236,-23.1793,0	0/1:69:34,35:34:1209:35:1256:-92.5742,0,-73.7844	1/1:27:0,27:0:0:27:950:-85.8134,-8.12781,0	1/1:96:0,96:0:0:96:3448:-310.502,-28.8989,0	1/1:83:1,82:1:36:82:2931:-260.304,-21.3872,0	1/1:28:0,28:0:0:28:1008:-91.0079,-8.42884,0	1/1:81:0,81:0:0:81:2896:-260.875,-24.3834,0	0/1:39:21,18:21:747:18:639:-46.0866,0,-46.4591	0/1:27:18,9:18:648:9:324:-21.378,0,-44.8325	1/1:30:0,30:0:0:30:1066:-96.2445,-9.0309,0	0/1:18:7,11:7:252:11:396:-30.5642,0,-15.3569	1/1:157:0,157:0:0:157:5622:-505.945,-47.2617,0	1/1:140:0,140:0:0:140:5016:-451.586,-42.1442,0	1/1:21:0,21:0:0:21:752:-67.9778,-6.32163,0	1/1:85:0,85:0:0:85:3044:-274.133,-25.5876,0	1/1:40:0,40:0:0:40:1436:-129.536,-12.0412,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:235:132,103:132:4725:103:3696:-262.04,0,-277.869	1/1:262:1,261:1:21:261:9341:-838.355,-76.7699,0	0/1:17:10,7:10:360:7:252:-17.9114,0,-22.6114	1/1:268:0,268:0:0:268:9574:-861.499,-80.676,0	1/1:87:0,87:0:0:87:3087:-278.056,-26.1896,0	1/1:76:0,76:0:0:76:2720:-244.976,-22.8783,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:18:14,4:14:500:4:144:-7.89508,0,-34.313	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:201:-18.4047,-1.80618,0	1/1:16:0,16:0:0:16:576:-51.6822,-4.81648,0	1/1:154:0,154:0:0:154:5509:-495.81,-46.3586,0	1/1:55:0,55:0:0:55:1967:-177.277,-16.5567,0	0/1:34:17,17:17:597:17:612:-45.1784,0,-38.0107	.:.:.:.:.:.:.:.	0/1:90:50,40:50:1800:40:1436:-101.168,0,-113.587	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:127:104,23:104:3713:23:824:-36.2525,0,-249.171	0/1:46:23,23:23:828:23:817:-60.0034,0,-50.237	1/1:53:0,53:0:0:53:1892:-170.54,-15.9546,0	1/1:54:1,53:1:21:53:1881:-167.438,-14.1557,0	1/1:54:0,54:0:0:54:1932:-174.156,-16.2556,0	1/1:107:0,107:0:0:107:3795:-341.636,-32.2102,0	1/1:96:0,96:0:0:96:3440:-309.81,-28.8989,0	0/1:124:60,64:60:2156:64:2268:-167.046,0,-133.937	1/1:74:0,74:0:0:74:2633:-237.188,-22.2762,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:80:35,45:35:1260:45:1616:-121.644,0,-77.8038	1/1:59:0,59:0:0:59:2101:-189.358,-17.7608,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-18.1807	0/1:150:81,69:81:2896:69:2456:-175.95,0,-175.384	0/1:29:20,9:20:716:9:324:-20.776,0,-45.4837	0/1:11:3,8:3:93:8:284:-22.5633,0,-4.31973	0/1:13:6,7:6:216:7:235:-17.5646,0,-11.112	1/1:65:0,65:0:0:65:2336:-210.419,-19.567,0	1/1:68:0,68:0:0:68:2444:-220.178,-20.47,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:173:1,171:1:36:171:6128:-547.979,-48.5387,0	1/1:91:0,91:0:0:91:3256:-293.246,-27.3937,0	1/1:49:0,49:0:0:49:1764:-159.039,-14.7505,0	1/1:54:0,54:0:0:54:1913:-172.385,-16.2556,0	1/1:177:2,175:2:68:175:6272:-558.613,-47.326,0	0/1:160:111,49:111:3962:49:1756:-110.159,0,-265.789	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:60:0,60:0:0:60:2156:-194.3,-18.0618,0	1/1:29:0,28:0:0:28:1008:-90.6765,-8.42884,0	1/1:25:1,24:1:36:24:856:-74.1006,-4.27959,0	0/1:117:43,74:43:1533:74:2648:-203.344,0,-88.277	1/1:78:0,78:0:0:78:2792:-251.366,-23.4803,0	1/1:59:0,59:0:0:59:2124:-190.84,-17.7608,0	1/1:166:0,166:0:0:166:5915:-532.064,-49.971,0	0/1:90:78,12:78:2804:12:418:-10.8599,0,-194.724	1/1:63:1,62:1:36:62:2211:-195.963,-15.7187,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-21.802	0/1:98:45,53:45:1612:53:1900:-141.776,0,-94.594	1/1:125:0,125:0:0:125:4465:-401.764,-37.6288,0	1/1:162:0,162:0:0:162:5804:-522.472,-48.7669,0	1/1:52:0,52:0:0:52:1856:-167.317,-15.6536,0	0/1:73:37,36:37:1332:36:1296:-94.9687,0,-85.2334	0/1:41:17,24:17:597:24:864:-65.7341,0,-36.4006	1/1:135:2,132:2:72:132:4723:-419.157,-34.6328,0	1/1:29:0,29:0:0:29:1044:-94.2168,-8.72987,0	1/1:58:0,58:0:0:58:2088:-188.184,-17.4597,0	1/1:80:0,79:0:0:79:2840:-255.449,-23.7814,0	0/1:33:21,12:21:756:12:424:-28.5624,0,-46.6007	0/1:41:17,24:17:612:24:864:-65.7403,0,-35.1933	0/1:61:38,23:38:1368:23:824:-56.1089,0,-91.1468	1/1:158:0,158:0:0:158:5645:-508.111,-47.5627,0	1/1:88:0,88:0:0:88:3156:-284.176,-26.4906,0
chr03	23721757	.	TAAC	CAAC,CAAT	129386	PASS	AB=0.481265,0.515808;ABP=8.21777,6.71757;AC=156,30;AF=0.83871,0.16129;AN=186;AO=5008,884;CIGAR=1X3M,1X2M1X;DP=5909;DPB=5910;DPRA=0,0.859694;EPP=10877.7,1922.59;EPPR=0;GTI=0;LEN=1,4;MEANALT=1.53763,2.18182;MQM=59.9964,59.9389;MQMR=0;NS=93;NUMALT=2;ODDS=3.41037;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=72,72;PQR=0;PRO=0;QA=178019,30986;QR=0;RO=0;RPL=5008,884;RPP=10877.7,1922.59;RPPR=0;RPR=0,0;RUN=1,1;SAF=5008,884;SAP=10877.7,1922.59;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,19,21:0:0:19,21:679,737:-115.414,-60.0478,-54.3282,-55.4356,0,-49.1139	1/1:39:0,39,0:0:0:39,0:1392,0:-125.579,-11.7402,0,-125.579,-11.7402,-125.579	1/2:63:0,23,40:0:0:23,40:820,1399:-181.009,-114.164,-107.241,-67.1988,0,-55.1576	1/1:71:0,71,0:0:0:71,0:2505,0:-225.702,-21.3731,0,-225.702,-21.3731,-225.702	1/1:21:0,21,0:0:0:21,0:734,0:-66.3804,-6.32163,0,-66.3804,-6.32163,-66.3804	1/1:31:0,31,0:0:0:31,0:1094,0:-98.7683,-9.33193,0,-98.7683,-9.33193,-98.7683	1/1:57:0,57,0:0:0:57,0:2026,0:-182.611,-17.1587,0,-182.611,-17.1587,-182.611	1/1:100:0,100,0:0:0:100,0:3532,0:-318.088,-30.103,0,-318.088,-30.103,-318.088	1/1:90:0,90,0:0:0:90,0:3197,0:-287.954,-27.0927,0,-287.954,-27.0927,-287.954	1/2:61:0,32,29:0:0:32,29:1148,1022:-177.203,-83.5618,-73.9289,-93.9969,0,-85.267	1/1:48:0,48,0:0:0:48,0:1682,0:-151.576,-14.4494,0,-151.576,-14.4494,-151.576	1/1:97:0,97,0:0:0:97,0:3438,0:-309.633,-29.1999,0,-309.633,-29.1999,-309.633	1/1:54:0,53,0:0:0:53,0:1855,0:-166.868,-15.9546,0,-166.868,-15.9546,-166.868	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/1:67:0,66,0:0:0:66,0:2341,0:-210.716,-19.868,0,-210.716,-19.868,-210.716	1/2:61:0,34,27:0:0:34,27:1220,950:-177.203,-77.6864,-67.4514,-99.8718,0,-91.744	1/2:24:0,8,15:0:0:8,15:264,520:-63.695,-42.3563,-39.9481,-21.4133,0,-16.8978	1/1:29:0,29,0:0:0:29,0:1036,0:-93.5539,-8.72987,0,-93.5539,-8.72987,-93.5539	1/2:35:0,9,26:0:0:9,26:317,918:-100.917,-75.1093,-72.4,-26.1601,0,-18.3333	1/1:87:0,87,0:0:0:87,0:3107,0:-279.857,-26.1896,0,-279.857,-26.1896,-279.857	1/1:74:0,74,0:0:0:74,0:2624,0:-236.407,-22.2762,0,-236.407,-22.2762,-236.407	1/1:100:0,100,0:0:0:100,0:3552,0:-319.889,-30.103,0,-319.889,-30.103,-319.889	1/1:80:0,80,0:0:0:80,0:2848,0:-256.557,-24.0824,0,-256.557,-24.0824,-256.557	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/1:97:0,95,0:0:0:95,0:3404,0:-306.239,-28.5979,0,-306.239,-28.5979,-306.239	1/2:135:0,76,58:0:0:76,58:2703,2062:-388.392,-168.111,-145.232,-220.355,0,-202.895	1/1:157:0,157,0:0:0:157,0:5591,0:-503.314,-47.2617,0,-503.314,-47.2617,-503.314	1/2:29:0,22,7:0:0:22,7:792,246:-85.004,-20.3744,-13.7517,-64.983,0,-62.8758	1/1:138:0,137,0:0:0:137,0:4876,0:-438.643,-41.2411,0,-438.643,-41.2411,-438.643	1/1:87:0,86,1:0:0:86,1:3075,36:-276.618,-25.8886,0,-273.681,-22.5913,-273.38	1/1:107:0,107,0:0:0:107,0:3816,0:-343.639,-32.2102,0,-343.639,-32.2102,-343.639	1/2:13:0,6,7:0:0:6,7:216,249:-38.2749,-20.6484,-18.8423,-17.9843,0,-15.8771	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:16:0,16,0:0:0:16,0:563,0:-50.9992,-4.81648,0,-50.9992,-4.81648,-50.9992	1/1:185:0,185,0:0:0:185,0:6584,0:-592.641,-55.6906,0,-592.641,-55.6906,-592.641	1/1:76:0,76,0:0:0:76,0:2720,0:-244.983,-22.8783,0,-244.983,-22.8783,-244.983	1/2:45:0,26,19:0:0:26,19:936,665:-130.833,-54.454,-46.6272,-76.7327,0,-71.0131	.:.:.:.:.:.:.:.	1/2:59:0,25,32:0:0:25,32:874,1125:-162.73,-91.6295,-84.1038,-71.1552,0,-61.5222	1/1:29:0,29,0:0:0:29,0:1026,0:-92.6513,-8.72987,0,-92.6513,-8.72987,-92.6513	1/2:77:0,38,39:0:0:38,39:1360,1342:-220.245,-109.334,-97.8952,-111.261,0,-99.5213	1/2:49:0,18,31:0:0:18,31:648,1099:-142.763,-89.8875,-84.4689,-53.2333,0,-43.9014	1/1:60:0,59,0:0:0:59,0:2057,0:-185.038,-17.7608,0,-185.038,-17.7608,-185.038	1/1:79:0,79,0:0:0:79,0:2802,0:-252.42,-23.7814,0,-252.42,-23.7814,-252.42	1/1:70:0,68,1:0:0:68,1:2408,30:-216.717,-20.47,0,-214.319,-18.0265,-214.018	1/1:99:0,99,0:0:0:99,0:3510,0:-316.112,-29.802,0,-316.112,-29.802,-316.112	1/1:74:0,74,0:0:0:74,0:2647,0:-238.476,-22.2762,0,-238.476,-22.2762,-238.476	1/2:44:0,18,26:0:0:18,26:640,909:-126.456,-74.2985,-68.8799,-52.5108,0,-44.684	1/1:43:0,43,0:0:0:43,0:1528,0:-137.813,-12.9443,0,-137.813,-12.9443,-137.813	1/1:10:0,10,0:0:0:10,0:351,0:-31.9267,-3.0103,0,-31.9267,-3.0103,-31.9267	1/2:104:0,56,48:0:0:56,48:2012,1696:-302.616,-138.476,-121.618,-164.495,0,-150.046	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/2:13:0,10,3:0:0:10,3:356,107:-38.0937,-9.07908,-6.06878,-29.3709,0,-28.4679	1/2:64:0,28,36:0:0:28,36:993,1270:-184.666,-103.765,-95.3362,-81.2545,0,-70.4175	1/2:30:0,12,18:0:0:12,18:432,615:-85.5079,-50.2516,-46.6392,-35.6088,0,-30.1903	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:9:0,3,6:0:0:3,6:108,208:-26.0695,-17.2528,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chr03	23721812	.	C	A	15967	PASS	AB=0.448004;ABP=56.5291;AC=30;AF=0.159574;AN=188;AO=1042;CIGAR=1X;DP=9121;DPB=9121;DPRA=1.19857;EPP=2265.68;EPPR=17520.3;GTI=4;LEN=1;MEANALT=1.02273;MQM=60;MQMR=59.9995;NS=94;NUMALT=1;ODDS=0.420739;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37040;QR=287408;RO=8075;RPL=0;RPP=2265.68;RPPR=17537.7;RPR=1042;RUN=1;SAF=0;SAP=2265.68;SAR=1042;SRF=2;SRP=17520.3;SRR=8073;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:10,11:10:360:11:387:-28.8443,0,-26.4227	0/0:148:148,0:148:5266:0:0:0,-44.5524,-474.076	0/1:78:47,31:47:1680:31:1116:-77.2714,0,-128.007	0/0:192:192,0:192:6799:0:0:0,-57.7978,-611.986	0/0:84:83,1:83:2972:1:36:0,-21.6882,-264.115	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:124:123,1:123:4392:1:36:0,-33.7294,-391.855	0/0:42:42,0:42:1463:0:0:0,-12.6433,-131.961	0/0:90:88,2:88:3131:2:72:0,-20.256,-275.18	0/1:84:52,32:52:1847:32:1140:-77.6227,0,-141.223	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:55:55,0:55:1927:0:0:0,-16.5566,-173.704	0/1:55:29,26:29:1024:26:924:-66.9204,0,-75.9159	0/1:57:33,24:33:1180:24:848:-59.4809,0,-89.3493	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:29:14,15:14:504:15:536:-39.8449,0,-36.9682	0/0:207:207,0:207:7340:0:0:0,-62.3132,-660.656	0/0:143:143,0:143:5037:0:0:0,-43.0473,-453.481	0/0:161:160,1:160:5689:1:36:0,-44.8676,-508.533	0/0:135:135,0:135:4823:0:0:0,-40.639,-434.225	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/1:395:221,174:221:7866:174:6180:-437.394,0,-589.065	0/0:175:174,1:174:6197:1:36:0,-49.082,-554.231	0/1:25:10,15:10:347:15:536:-41.0491,0,-24.0379	0/0:315:313,0:313:11167:0:0:0,-94.2224,-1004.56	0/0:244:240,4:240:8575:4:140:0,-60.5067,-758.804	0/0:123:123,0:123:4383:0:0:0,-37.0267,-394.645	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:186:186,0:186:6614:0:0:0,-55.9916,-595.344	0/0:180:180,0:180:6413:0:0:0,-54.1854,-577.26	0/1:52:29,23:29:1031:23:828:-59.1906,0,-77.4491	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:160:87,73:87:3099:73:2607:-186.713,0,-230.973	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:97:63,34:63:2237:34:1204:-79.4654,0,-172.392	0/1:108:48,60:48:1720:60:2116:-158.196,0,-122.574	0/0:54:54,0:54:1904:0:0:0,-16.2556,-171.635	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:160:158,2:158:5627:2:72:0,-41.3281,-499.715	0/0:294:292,1:292:10411:1:32:0,-85.3424,-933.694	0/0:179:178,1:178:6330:1:36:0,-50.2861,-566.195	0/1:131:71,60:71:2527:60:2151:-154.422,0,-188.247	0/0:124:124,0:124:4416:0:0:0,-37.3277,-397.612	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:90:50,40:50:1779:40:1432:-102.085,0,-133.299	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:128:76,52:76:2683:52:1851:-128.337,0,-203.182	0/1:49:33,16:33:1180:16:563:-36.2487,0,-91.7576	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:19:17,2:17:612:2:72:-1.11715,0,-49.6939	0/0:116:116,0:116:4117:0:0:0,-34.9195,-370.714	0/0:103:102,1:102:3620:1:36:0,-27.4078,-322.407	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:313:311,2:311:11092:2:72:0,-87.3857,-991.338	0/0:251:249,2:249:8824:2:72:0,-68.7218,-787.318	0/0:89:88,1:88:3148:1:36:0,-23.1934,-279.947	0/0:78:78,0:78:2772:0:0:0,-23.4803,-249.723	0/0:205:205,0:205:7317:0:0:0,-61.7111,-658.581	0/1:85:38,47:38:1347:47:1675:-125.449,0,-95.9419	0/0:16:16,0:16:551:0:0:0,-4.81648,-49.9145	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.831	0/0:75:75,0:75:2657:0:0:0,-22.5772,-239.375	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/1:79:42,37:42:1504:37:1316:-94.9604,0,-111.873	0/0:78:78,0:78:2767:0:0:0,-23.4803,-249.272	0/0:139:139,0:139:4930:0:0:0,-41.8432,-443.852	0/0:168:168,0:168:5979:0:0:0,-50.573,-538.218	0/1:56:31,25:31:1108:25:888:-63.3813,0,-83.1733	0/0:136:135,1:135:4824:1:36:0,-37.3418,-430.718	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:166:90,76:90:3195:76:2689:-192.284,0,-237.804	0/0:104:104,0:104:3708:0:0:0,-31.3071,-333.923	0/0:171:171,0:171:6100:0:0:0,-51.4761,-549.104	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/1:54:28,26:28:996:26:919:-66.7705,0,-73.6993	0/1:101:58,43:58:2043:43:1505:-105.335,0,-153.738	0/0:127:126,0:126:4485:0:0:0,-37.9298,-403.46	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.949	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/1:24:17,7:17:590:7:252:-15.8042,0,-46.1994	0/1:49:23,26:23:819:26:918:-68.1848,0,-59.2811	0/1:62:27,35:27:956:35:1243:-93.51,0,-67.6919	0/0:104:104,0:104:3687:0:0:0,-31.3071,-332.033	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.957
chr03	23805640	.	ATGCCA	GTACCG,ATACCA	76557.2	PASS	AB=0.531283,0.462354;ABP=11.0261,14.6184;AC=153,33;AF=0.822581,0.177419;AN=186;AO=3083,443;CIGAR=1X1M1X2M1X,2M1X3M;DP=3559;DPB=3559;DPRA=38.6739,0.701022;EPP=6680.3,964.973;EPPR=5.18177;GTI=5;LEN=6,1;MEANALT=1.68478,2.22857;MQM=59.5307,59.9729;MQMR=60;NS=93;NUMALT=2;ODDS=0.86027;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=108225,15836;QR=31;RO=1;RPL=1,0;RPP=6688.98,964.973;RPPR=5.18177;RPR=3082,443;RUN=1,1;SAF=1,0;SAP=6688.98,964.973;SAR=3082,443;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:11:0,7,4:0:0:7,4:248,144:-32.3089,-12.1095,-10.0023,-20.5572,0,-19.3531	1/1:18:0,18,0:0:0:18,0:636,0:-57.5468,-5.41854,0,-57.5468,-5.41854,-57.5468	1/2:37:0,15,22:0:0:15,22:522,788:-107.052,-64.6139,-60.0985,-42.79,0,-36.1674	1/1:83:0,82,0:0:0:82,0:2865,0:-257.439,-24.6845,0,-257.439,-24.6845,-257.439	1/1:4:0,4,0:0:0:4,0:144,0:-13.3089,-1.20412,0,-13.3089,-1.20412,-13.3089	1/1:4:0,4,0:0:0:4,0:136,0:-12.575,-1.20412,0,-12.575,-1.20412,-12.575	1/1:35:0,33,0:0:0:33,0:1171,0:-105.346,-9.93399,0,-105.346,-9.93399,-105.346	1/1:16:0,16,0:0:0:16,0:561,0:-50.8085,-4.81648,0,-50.8085,-4.81648,-50.8085	1/1:44:0,44,0:0:0:44,0:1557,0:-140.405,-13.2453,0,-140.405,-13.2453,-140.405	1/2:32:0,21,10:0:0:21,10:744,360:-90.0826,-29.4717,-23.1501,-60.7075,0,-57.6972	1/1:33:0,33,0:0:0:33,0:1166,0:-105.246,-9.93399,0,-105.246,-9.93399,-105.246	1/1:81:0,81,0:0:0:81,0:2817,0:-253.747,-24.3834,0,-253.747,-24.3834,-253.747	1/1:69:0,67,0:0:0:67,0:2339,0:-210.466,-20.169,0,-210.466,-20.169,-210.466	1/1:43:0,42,0:0:0:42,0:1469,0:-132.136,-12.6433,0,-132.136,-12.6433,-132.136	1/1:54:0,52,0:0:0:52,0:1817,0:-163.44,-15.6536,0,-163.44,-15.6536,-163.44	1/2:53:0,31,21:0:0:31,21:1076,752:-148.862,-61.4218,-52.0899,-87.5297,0,-81.2081	1/2:20:0,13,7:0:0:13,7:463,228:-56.4733,-18.7304,-14.817,-38.0791,0,-35.9719	1/1:19:0,19,0:0:0:19,0:656,0:-59.3584,-5.71957,0,-59.3584,-5.71957,-59.3584	1/2:28:0,15,12:0:0:15,12:527,432:-78.2439,-35.3507,-30.8353,-42.9885,0,-39.3761	1/1:57:0,57,0:0:0:57,0:2015,0:-181.57,-17.1587,0,-181.57,-17.1587,-181.57	1/1:73:0,71,0:0:0:71,0:2471,0:-222.275,-21.3731,0,-222.275,-21.3731,-222.275	1/1:10:0,10,0:0:0:10,0:360,0:-32.7434,-3.0103,0,-32.7434,-3.0103,-32.7434	1/1:34:0,34,0:0:0:34,0:1186,0:-107.036,-10.235,0,-107.036,-10.235,-107.036	1/2:13:0,9,4:0:0:9,4:321,140:-37.9126,-11.7405,-9.03119,-26.524,0,-25.3199	1/1:9:0,9,0:0:0:9,0:317,0:-28.8675,-2.70927,0,-28.8675,-2.70927,-28.8675	1/2:68:0,35,33:0:0:35,33:1244,1188:-198.665,-97.2946,-86.7586,-101.728,0,-91.7936	1/1:117:0,114,0:0:0:114,0:4008,0:-360.481,-34.3174,0,-360.481,-34.3174,-360.481	1/2:15:0,4,11:0:0:4,11:143,396:-44.3307,-32.6714,-31.4673,-12.0173,0,-8.70599	1/1:80:0,79,0:0:0:79,0:2766,0:-248.816,-23.7814,0,-248.816,-23.7814,-248.816	1/1:37:0,37,0:0:0:37,0:1296,0:-116.906,-11.1381,0,-116.906,-11.1381,-116.906	1/1:42:0,41,0:0:0:41,0:1443,0:-129.878,-12.3422,0,-129.878,-12.3422,-129.878	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:6:0,3,3:0:0:3,3:108,108:-17.9797,-9.17208,-8.26899,-9.16732,0,-8.26423	1/1:4:0,4,0:0:0:4,0:131,0:-12.1002,-1.20412,0,-12.1002,-1.20412,-12.1002	1/1:6:0,6,0:0:0:6,0:207,0:-18.9658,-1.80618,0,-18.9658,-1.80618,-18.9658	1/1:9:0,9,0:0:0:9,0:319,0:-28.9919,-2.70927,0,-28.9919,-2.70927,-28.9919	1/1:186:0,185,0:0:0:185,0:6508,0:-585.608,-55.6906,0,-585.608,-55.6906,-585.608	1/1:28:0,28,0:0:0:28,0:979,0:-88.4157,-8.42884,0,-88.4157,-8.42884,-88.4157	1/2:33:0,18,15:0:0:18,15:626,525:-93.9594,-43.0626,-37.6441,-51.2456,0,-46.7302	.:.:.:.:.:.:.:.	1/2:35:0,14,21:0:0:14,21:483,752:-100.917,-61.6846,-57.4702,-39.5824,0,-33.2608	1/1:29:0,29,0:0:0:29,0:1025,0:-92.5576,-8.72987,0,-92.5576,-8.72987,-92.5576	1/2:18:0,11,7:0:0:11,7:383,248:-51.6974,-20.557,-17.2457,-31.4922,0,-29.385	1/2:23:0,11,12:0:0:11,12:395,432:-67.8303,-35.6088,-32.2975,-32.5808,0,-28.9685	1/1:44:0,44,0:0:0:44,0:1545,0:-139.337,-13.2453,0,-139.337,-13.2453,-139.337	1/1:19:0,19,0:0:0:19,0:665,0:-60.1436,-5.71957,0,-60.1436,-5.71957,-60.1436	1/1:18:0,18,0:0:0:18,0:629,0:-56.928,-5.41854,0,-56.928,-5.41854,-56.928	1/1:26:0,26,0:0:0:26,0:925,0:-83.5657,-7.82678,0,-83.5657,-7.82678,-83.5657	1/1:39:0,39,0:0:0:39,0:1360,0:-122.692,-11.7402,0,-122.692,-11.7402,-122.692	1/2:44:0,31,13:0:0:31,13:1097,464:-127.531,-38.1841,-28.8522,-89.7031,0,-85.7897	1/1:47:0,47,0:0:0:47,0:1657,0:-149.413,-14.1484,0,-149.413,-14.1484,-149.413	1/1:5:0,5,0:0:0:5,0:178,0:-16.3687,-1.50515,0,-16.3687,-1.50515,-16.3687	1/2:37:0,18,19:0:0:18,19:629,675:-106.483,-55.3574,-49.9388,-51.478,0,-45.7585	1/1:29:0,29,0:0:0:29,0:1018,0:-91.9312,-8.72987,0,-91.9312,-8.72987,-91.9312	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:48:0,30,18:0:0:30,18:1069,648:-140.36,-53.2333,-44.2024,-87.4855,0,-82.0669	1/2:9:0,7,2:0:0:7,2:246,72:-26.2514,-6.23466,-4.12745,-20.3747,0,-19.7726	1/2:5:0,3,2:0:0:3,2:107,68:-14.5882,-5.85565,-4.95256,-9.07908,0,-8.47702	1/2:6:0,5,1:0:0:5,1:175,36:-17.5262,-3.29724,-1.79209,-14.5871,0,-14.2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chr03	23805670	.	C	A	6863	PASS	AB=0.468449;ABP=11.0947;AC=33;AF=0.177419;AN=186;AO=445;CIGAR=1X;DP=3515;DPB=3515;DPRA=0.704924;EPP=969.316;EPPR=6660.75;GTI=5;LEN=1;MEANALT=1;MQM=59.9416;MQMR=59.528;NS=93;NUMALT=1;ODDS=0.721011;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15909;QR=109652;RO=3070;RPL=445;RPP=969.316;RPPR=6669.43;RPR=0;RUN=1;SAF=0;SAP=969.316;SAR=445;SRF=1;SRP=6660.75;SRR=3069;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.625	0/1:38:15,23:15:540:23:812:-61.9536,0,-37.495	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.188	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3089	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.984	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5657	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.711	0/1:31:22,9:22:792:9:320:-19.8081,0,-62.269	0/0:32:32,0:32:1128:0:0:0,-9.63296,-101.825	0/0:80:80,0:80:2834:0:0:0,-24.0824,-255.261	0/0:67:67,0:67:2385:0:0:0,-20.169,-214.882	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.252	0/0:54:54,0:54:1898:0:0:0,-16.2556,-171.08	0/1:53:32,21:32:1133:21:756:-52.4126,0,-86.1213	0/1:21:13,8:13:464:8:284:-19.5817,0,-35.7595	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.888	0/1:25:15,10:15:536:10:360:-25.1825,0,-41.0491	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.753	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.675	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5049	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.458	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0823	0/1:69:35,34:35:1252:34:1220:-89.3357,0,-92.2127	0/0:113:113,0:113:3998:0:0:0,-34.0164,-359.846	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.346	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.775	0/0:42:42,0:42:1474:0:0:0,-12.6433,-132.943	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26423	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2828	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0558	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4384	0/0:185:185,0:185:6637:0:0:0,-55.6905,-597.39	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.71	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0166	.:.:.:.:.:.:.:.	0/1:34:13,21:13:464:21:752:-57.7712,0,-31.8625	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3099	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:23:11,12:11:392:12:432:-32.2975,0,-28.6964	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.608	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.8445	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9313	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7956	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.413	0/1:44:31,13:31:1116:13:468:-29.2143,0,-87.4993	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.842	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2312	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5526	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:47:30,17:30:1076:17:608:-40.9036,0,-82.9983	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:6:5,1:5:176:1:32:-1.39313,0,-14.3779	0/0:29:29,0:29:1044:0:0:0,-8.72987,-93.489	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.25	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:92:92,0:92:3293:0:0:0,-27.6948,-296.583	0/0:36:36,0:36:1265:0:0:0,-10.8371,-114.124	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.1341	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6033	0/0:37:34,3:34:1216:3:108:0,-1.06294,-99.669	0/1:60:18,42:18:648:42:1504:-117.593,0,-40.5901	0/0:29:27,2:27:954:2:72:0,-1.89315,-79.3372	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2022	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8564	0/1:29:19,10:19:669:10:360:-24.0144,0,-51.6052	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.207	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.813	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.043	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.2899	0/1:8:1,7:1:32:7:252:-20.6207,0,-0.791073	0/1:29:19,10:19:684:10:360:-24.0144,0,-53.1512	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.259	0/0:51:51,0:51:1787:0:0:0,-15.3525,-161.083	0/0:49:49,0:49:1744:0:0:0,-14.7505,-156.254	0/1:39:23,16:23:813:16:572:-40.0733,0,-61.7466	0/1:42:18,24:18:644:24:864:-65.4393,0,-45.6336	0/0:107:107,0:107:3813:0:0:0,-32.2102,-343.353	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.26	0/0:47:46,1:46:1656:1:36:0,-10.5501,-145.689	0/1:33:12,21:12:432:21:748:-57.7113,0,-29.2872	0/1:94:56,38:56:2008:38:1344:-92.9633,0,-152.558	0/1:57:25,32:25:900:32:1129:-84.7576,0,-64.16	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.838	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.221
chr03	23805973	.	A	G	75672.2	PASS	AB=0.520366;ABP=25.8303;AC=32;AF=0.170213;AN=188;AO=3343;CIGAR=1X;DP=22612;DPB=22612;DPRA=1.1326;EPP=7262.24;EPPR=41736.6;GTI=0;LEN=1;MEANALT=1.06;MQM=59.9824;MQMR=59.9648;NS=94;NUMALT=1;ODDS=10.9552;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118829;QR=688835;RO=19263;RPL=1770;RPP=28.219;RPPR=228.716;RPR=1573;RUN=1;SAF=1770;SAP=28.219;SAR=1573;SRF=10328;SRP=221.753;SRR=8935;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:132:60,72:60:2156:72:2558:-190.726,0,-154.571	0/0:352:352,0:352:12607:0:0:0,-105.963,-1133.09	0/1:283:140,143:140:5015:143:5110:-374.852,0,-366.304	0/0:526:524,2:524:18734:2:72:0,-151.505,-1678.79	0/0:99:99,0:99:3564:0:0:0,-29.802,-320.966	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/0:421:420,1:420:15018:1:36:0,-123.135,-1347.75	0/0:322:322,0:322:11519:0:0:0,-96.9317,-1036.58	0/0:222:221,0:221:7893:0:0:0,-66.5276,-710.186	0/1:249:130,119:130:4628:119:4272:-309.7,0,-341.725	0/0:114:114,0:114:4061:0:0:0,-34.3174,-365.677	0/0:216:216,0:216:7678:0:0:0,-65.0225,-691.059	0/0:186:186,0:186:6658:0:0:0,-55.9916,-599.296	0/0:162:162,0:162:5760:0:0:0,-48.7669,-518.515	0/0:197:197,0:197:7016:0:0:0,-59.3029,-631.505	0/1:129:53,76:53:1886:76:2719:-206.12,0,-131.184	0/1:133:58,75:58:2075:75:2653:-198.979,0,-146.983	0/0:109:109,0:109:3884:0:0:0,-32.8123,-349.754	0/1:59:28,31:28:1004:31:1080:-79.745,0,-71.5492	0/0:643:640,3:640:22895:3:108:0,-183.487,-2049.84	0/0:548:547,0:547:19544:0:0:0,-164.663,-1758.28	0/0:248:248,0:248:8892:0:0:0,-74.6554,-800.262	0/0:282:282,0:282:10090:0:0:0,-84.8905,-908.008	0/1:295:173,122:173:6196:122:4296:-298.014,0,-468.93	0/0:143:143,0:143:5127:0:0:0,-43.0473,-461.571	0/1:624:304,319:304:10827:319:11327:-831.415,0,-786.431	0/0:607:605,2:605:21620:2:72:0,-175.888,-1938.32	0/1:99:40,59:40:1427:59:2112:-160.547,0,-98.9248	0/0:741:740,1:740:26525:1:36:0,-219.465,-2381.44	0/0:358:342,16:342:12201:16:568:0,-56.3169,-1046.36	0/0:306:305,1:305:10865:1:36:0,-88.5169,-974.045	0/1:30:15,15:15:540:15:540:-39.9056,0,-39.9056	0/1:50:24,26:24:864:26:923:-68.3353,0,-63.0311	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:418:417,1:417:14918:1:36:0,-122.232,-1337.3	0/0:300:298,1:298:10655:1:36:0,-86.6896,-955.338	0/1:145:82,63:82:2939:63:2246:-158.754,0,-221.094	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:451:222,229:222:7956:229:8128:-595.774,0,-578.936	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/1:322:155,167:155:5541:167:5975:-440.925,0,-401.882	0/1:199:110,89:110:3928:89:3172:-225.801,0,-293.806	0/0:128:128,0:128:4563:0:0:0,-38.5318,-410.837	0/0:333:331,2:331:11824:2:72:0,-93.4063,-1057.18	0/0:277:277,0:277:9902:0:0:0,-83.3853,-891.122	0/0:453:453,0:453:16215:0:0:0,-136.367,-1457.66	0/0:271:271,0:271:9736:0:0:0,-81.5791,-875.866	0/1:334:156,178:156:5604:178:6309:-467.359,0,-403.936	0/0:299:298,1:298:10669:1:36:0,-86.4097,-956.519	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:343:178,165:178:6384:165:5858:-424.076,0,-471.394	0/0:138:138,0:138:4911:0:0:0,-41.5421,-442.141	0/1:23:16,7:16:576:7:248:-15.7405,0,-45.2513	0/1:296:160,136:160:5692:136:4775:-340.785,0,-423.293	0/1:184:94,90:94:3338:90:3199:-232.742,0,-245.246	0/1:19:5,14:5:180:14:495:-39.1635,0,-10.8325	0/1:31:17,14:17:608:14:500:-36.0042,0,-45.7201	0/0:273:273,0:273:9724:0:0:0,-82.1812,-875.111	0/0:215:215,0:215:7679:0:0:0,-64.7214,-691.144	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:417:417,0:417:14937:0:0:0,-125.53,-1344.06	0/0:342:336,6:336:12012:6:216:0,-83.1617,-1061.14	0/0:196:196,0:196:7032:0:0:0,-59.0019,-632.94	0/0:237:237,0:237:8466:0:0:0,-71.3441,-761.943	0/0:424:424,0:424:15194:0:0:0,-127.637,-1367.17	0/1:322:112,210:112:4024:210:7483:-576.582,0,-265.411	0/0:121:120,1:120:4300:1:36:0,-32.8264,-383.578	0/0:214:210,4:210:7506:4:140:0,-51.4758,-662.638	0/0:145:145,0:145:5173:0:0:0,-43.6493,-465.71	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:215:112,103:112:4020:103:3655:-264.432,0,-297.266	0/0:198:197,1:197:7063:1:36:0,-56.0057,-632.13	0/0:448:448,0:448:16005:0:0:0,-134.861,-1437.47	0/0:441:441,0:441:15787:0:0:0,-132.754,-1420.52	0/1:173:65,108:65:2328:108:3829:-292.727,0,-157.702	0/0:320:318,2:318:11408:2:72:0,-89.4929,-1019.76	0/1:22:8,14:8:288:14:500:-38.7135,0,-19.6447	0/1:317:150,167:150:5361:167:5948:-440.003,0,-387.149	0/0:408:408,0:408:14612:0:0:0,-122.82,-1314.63	0/0:557:557,0:557:19923:0:0:0,-167.674,-1791.8	0/0:187:187,0:187:6661:0:0:0,-56.2926,-599.568	0/1:156:67,89:67:2395:89:3184:-239.823,0,-168.846	0/1:183:86,97:86:3084:97:3440:-254.723,0,-222.699	0/0:329:329,0:329:11721:0:0:0,-99.0389,-1054.76	0/0:76:75,1:75:2688:1:36:0,-19.28,-237.204	0/0:168:167,1:167:5955:1:36:0,-46.9748,-532.458	0/0:172:172,0:172:6151:0:0:0,-51.7772,-553.689	0/1:101:55,46:55:1959:46:1644:-117.845,0,-146.181	0/1:236:115,120:115:4128:120:4214:-308.342,0,-300.601	0/1:179:46,133:46:1648:133:4757:-374.402,0,-93.7027	0/0:363:362,0:362:12984:0:0:0,-108.973,-1168.02	0/0:241:241,0:241:8580:0:0:0,-72.5482,-772.199
chr03	23810485	.	A	G	13583.2	PASS	AB=0.494955;ABP=3.38274;AC=31;AF=0.164894;AN=188;AO=838;CIGAR=1X;DP=6182;DPB=6182;DPRA=0.749563;EPP=1822.7;EPPR=11607.4;GTI=1;LEN=1;MEANALT=1;MQM=59.9702;MQMR=59.9942;NS=94;NUMALT=1;ODDS=0.0881567;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29791;QR=191217;RO=5344;RPL=0;RPP=1822.7;RPPR=11607.4;RPR=838;RUN=1;SAF=838;SAP=1822.7;SAR=0;SRF=5344;SRP=11607.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:12,15:12:432:15:521:-39.0885,0,-31.0934	0/0:63:62,1:62:2232:1:36:0,-15.3666,-197.545	0/1:141:75,66:75:2670:66:2361:-170.302,0,-198.097	0/0:164:164,0:164:5858:0:0:0,-49.3689,-527.325	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:83:83,0:83:2953:0:0:0,-24.9855,-266.003	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/1:55:24,31:24:864:31:1093:-82.121,0,-61.5259	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:54:54,0:54:1929:0:0:0,-16.2556,-173.885	0/1:30:15,15:15:536:15:540:-39.9056,0,-39.5439	0/1:25:11,14:11:392:14:500:-37.8104,0,-28.0943	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:149:149,0:149:5337:0:0:0,-44.8535,-480.461	0/0:104:104,0:104:3695:0:0:0,-31.3071,-332.749	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.751	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.27	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/0:73:73,0:73:2609:0:0:0,-21.9752,-235.056	0/1:191:99,92:99:3548:92:3227:-233.141,0,-262.032	0/0:248:248,0:248:8863:0:0:0,-74.6554,-797.651	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/0:202:202,0:202:7225:0:0:0,-60.8081,-650.303	0/0:70:68,2:68:2436:2:72:0,-14.2354,-212.659	0/0:85:85,0:85:3021:0:0:0,-25.5875,-272.12	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:149:149,0:149:5329:0:0:0,-44.8535,-479.742	0/0:105:105,0:105:3753:0:0:0,-31.6081,-337.969	0/1:38:13,25:13:453:25:900:-69.8819,0,-29.6605	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:69:38,31:38:1364:31:1070:-75.8303,0,-102.29	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:152:87,65:87:3098:65:2324:-163.664,0,-233.288	0/1:52:21,31:21:748:31:1112:-84.7378,0,-51.9917	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.586	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.87	0/0:130:130,0:130:4622:0:0:0,-39.1339,-416.143	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:64:40,24:40:1421:24:854:-57.914,0,-108.919	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:63:35,28:35:1260:28:1008:-72.0715,0,-94.7406	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:106:54,52:54:1940:52:1840:-133.967,0,-142.967	0/1:32:8,24:8:284:24:834:-65.7401,0,-16.2704	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:130:130,0:130:4672:0:0:0,-39.1339,-420.639	0/0:110:110,0:110:3956:0:0:0,-33.1133,-356.23	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.5	0/0:133:133,0:133:4742:0:0:0,-40.037,-426.937	0/1:91:32,59:32:1148:59:2108:-162.596,0,-76.2361	0/0:25:24,1:24:860:1:36:0,-3.92747,-74.1236	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:34:34,0:34:1186:0:0:0,-10.235,-107.041	0/1:113:66,47:66:2368:47:1650:-114.767,0,-179.362	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.128	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:76:48,28:48:1728:28:1004:-67.7976,0,-132.927	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:32:19,13:19:676:13:468:-32.8267,0,-51.535	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.941	0/0:141:141,0:141:5048:0:0:0,-42.4452,-454.465	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123	0/1:54:25,29:25:896:29:1044:-78.0192,0,-64.7047	0/1:35:12,23:12:432:23:824:-63.9473,0,-28.6851	0/0:74:74,0:74:2645:0:0:0,-22.2762,-238.295	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/1:68:36,32:36:1296:32:1129:-81.4463,0,-96.4739	0/1:58:19,39:19:665:39:1404:-109.2,0,-42.713	0/0:99:99,0:99:3533:0:0:0,-29.802,-318.02	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507
chr03	23842169	.	A	T	175153	PASS	AB=0.414281;ABP=205.899;AC=156;AF=0.829787;AN=188;AO=8015;CIGAR=1X;DP=9901;DPB=9901;DPRA=35.4767;EPP=17407.4;EPPR=4096.24;GTI=3;LEN=1;MEANALT=1.01075;MQM=53.9167;MQMR=29.3422;NS=94;NUMALT=1;ODDS=1.03613;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287345;QR=67397;RO=1885;RPL=0;RPP=17407.4;RPPR=4096.24;RPR=8015;RUN=1;SAF=8015;SAP=17407.4;SAR=0;SRF=1885;SRP=4096.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:12,10:12:428:10:356:-25.6789,0,-21.6751	1/1:181:0,181:0:0:181:6488:-581.729,-54.4864,0	0/1:114:71,43:71:2544:43:1544:-104.396,0,-134.682	1/1:238:0,238:0:0:238:8512:-764.795,-71.6451,0	1/1:12:0,12:0:0:12:432:-39.1477,-3.61236,0	1/1:25:0,25:0:0:25:900:-80.8975,-7.52575,0	1/1:100:0,100:0:0:100:3592:-322.998,-30.103,0	1/1:142:0,142:0:0:142:5081:-455.303,-42.7463,0	1/1:112:2,110:2:72:110:3936:-348.313,-28.683,0	0/1:183:97,86:97:3480:86:3092:-222.859,0,-199.008	1/1:69:0,69:0:0:69:2480:-223.014,-20.7711,0	1/1:96:0,96:0:0:96:3444:-308.99,-28.8989,0	1/1:98:0,98:0:0:98:3511:-314.459,-29.5009,0	1/1:95:0,95:0:0:95:3393:-303.922,-28.5979,0	1/1:75:0,75:0:0:75:2696:-242.452,-22.5773,0	0/1:72:36,36:36:1296:36:1288:-94.2639,0,-69.5438	0/1:80:45,35:45:1586:35:1252:-88.621,0,-81.1674	1/1:70:0,70:0:0:70:2502:-224.639,-21.0721,0	0/1:44:27,17:27:968:17:612:-42.0224,0,-51.1551	1/1:196:0,196:0:0:196:7040:-632.429,-59.0019,0	1/1:138:0,138:0:0:138:4913:-441.37,-41.5421,0	1/1:87:1,86:1:36:86:3080:-273.585,-23.066,0	1/1:78:0,78:0:0:78:2785:-249.308,-23.4803,0	0/1:147:88,59:88:3132:59:2108:-144.67,0,-176.688	1/1:50:0,50:0:0:50:1800:-161.678,-15.0515,0	0/1:417:219,198:219:7833:198:7089:-511.247,0,-484.988	1/1:172:0,172:0:0:172:6180:-554.057,-51.7772,0	0/1:35:17,18:17:600:18:648:-47.9035,0,-32.6441	1/1:191:0,191:0:0:191:6860:-616.242,-57.4967,0	1/1:155:11,144:11:396:144:5176:-436.586,-18.4488,0	1/1:131:0,131:0:0:131:4696:-422.071,-39.4349,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.89903	0/1:5:2,3:2:72:3:108:-8.53731,0,-4.48154	1/1:6:0,6:0:0:6:212:-19.11,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	1/1:210:0,210:0:0:210:7528:-676.287,-63.2163,0	1/1:130:1,129:1:36:129:4632:-412.143,-36.3128,0	0/1:71:43,28:43:1540:28:1004:-68.891,0,-81.1064	1/1:7:0,7:0:0:7:252:-22.9902,-2.10721,0	0/1:220:137,83:137:4905:83:2972:-200.862,0,-279.102	1/1:28:0,28:0:0:28:1008:-90.9073,-8.42884,0	0/1:166:111,55:111:3980:55:1974:-127.308,0,-230.077	0/1:90:51,39:51:1832:39:1400:-98.9445,0,-107.626	1/1:77:0,77:0:0:77:2745:-247.102,-23.1793,0	1/1:79:0,79:0:0:79:2840:-255.14,-23.7814,0	1/1:60:0,60:0:0:60:2137:-191.75,-18.0618,0	1/1:138:0,138:0:0:138:4944:-443.952,-41.5421,0	1/1:98:0,98:0:0:98:3504:-314.912,-29.5009,0	0/1:196:104,92:104:3724:92:3288:-236.671,0,-215.583	1/1:149:0,149:0:0:149:5344:-479.745,-44.8535,0	1/1:4:0,4:0:0:4:140:-12.9364,-1.20412,0	0/1:127:80,47:80:2849:47:1688:-113.399,0,-151.241	1/1:19:0,19:0:0:19:676:-61.0978,-5.71957,0	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	0/1:132:68,64:68:2424:64:2288:-166.024,0,-130.836	0/1:41:34,7:34:1224:7:252:-10.6701,0,-77.2323	0/1:8:3,5:3:108:5:180:-14.1268,0,-6.33795	0/1:29:10,19:10:356:19:684:-52.9936,0,-19.4428	1/1:92:0,92:0:0:92:3296:-295.715,-27.6948,0	1/1:145:0,145:0:0:145:5208:-467.541,-43.6494,0	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	1/1:504:1,502:1:36:502:18016:-1613.48,-148.63,0	1/1:233:0,233:0:0:233:8360:-750.78,-70.14,0	1/1:113:0,113:0:0:113:4052:-363.514,-34.0164,0	1/1:25:0,25:0:0:25:892:-80.3746,-7.52575,0	1/1:150:0,150:0:0:150:5388:-484.48,-45.1545,0	0/1:124:84,40:84:3004:40:1423:-90.943,0,-181.175	1/1:17:0,17:0:0:17:612:-55.1926,-5.11751,0	1/1:87:0,87:0:0:87:3124:-280.286,-26.1896,0	1/1:106:0,106:0:0:106:3800:-341.286,-31.9092,0	1/1:41:0,41:0:0:41:1437:-129.276,-12.3422,0	0/1:99:64,35:64:2292:35:1260:-81.3816,0,-122.675	1/1:95:0,95:0:0:95:3416:-304.866,-28.5979,0	1/1:158:0,158:0:0:158:5661:-507.693,-47.5627,0	1/1:218:0,218:0:0:218:7816:-702.601,-65.6245,0	0/1:136:81,55:81:2881:55:1976:-136.647,0,-152.049	1/1:174:4,170:4:140:170:6108:-537.534,-42.642,0	0/1:3:1,2:1:36:2:72:-5.91644,0,-1.74551	0/1:196:130,66:130:4622:66:2376:-153.709,0,-268.259	1/1:82:0,82:0:0:82:2948:-264.14,-24.6845,0	1/1:144:0,144:0:0:144:5152:-463.067,-43.3483,0	1/1:112:0,112:0:0:112:4020:-361.228,-33.7154,0	0/1:82:49,33:49:1749:33:1188:-82.0247,0,-100.723	0/1:130:80,50:80:2868:50:1788:-121.774,0,-172.949	1/1:169:0,169:0:0:169:6080:-546.372,-50.8741,0	1/1:50:0,50:0:0:50:1792:-160.977,-15.0515,0	1/1:107:0,107:0:0:107:3848:-345.187,-32.2102,0	1/1:74:0,74:0:0:74:2656:-237.921,-22.2762,0	0/1:35:14,21:14:504:21:752:-57.0942,0,-24.9788	0/1:94:40,54:40:1436:54:1936:-145.363,0,-73.3007	0/1:81:64,17:64:2300:17:604:-30.18,0,-145.317	1/1:195:0,195:0:0:195:6992:-628.464,-58.7009,0	1/1:99:0,99:0:0:99:3542:-318.307,-29.802,0
chr03	23842223	.	G	A	19537.5	PASS	AB=0.573907;ABP=150.659;AC=32;AF=0.170213;AN=188;AO=1809;CIGAR=1X;DP=9866;DPB=9866;DPRA=1.18183;EPP=3931.2;EPPR=17437.8;GTI=2;LEN=1;MEANALT=1;MQM=29.3278;MQMR=53.9059;NS=94;NUMALT=1;ODDS=1.18058;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64466;QR=287199;RO=8057;RPL=1809;RPP=3931.2;RPPR=17437.8;RPR=0;RUN=1;SAF=1809;SAP=3931.2;SAR=0;SRF=8057;SRP=17498.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:11,11:11:392:11:392:-19.2909,0,-28.9062	0/0:178:178,0:178:6338:0:0:0,-53.5833,-568.401	0/1:116:47,69:47:1635:69:2460:-129.13,0,-111.928	0/0:236:236,0:236:8455:0:0:0,-71.0431,-759.386	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0222	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.6671	0/0:99:99,0:99:3527:0:0:0,-29.802,-317.352	0/0:143:143,0:143:5053:0:0:0,-43.0473,-453.275	0/0:114:112,2:112:3986:2:72:0,-29.2851,-352.813	0/1:179:85,94:85:3039:94:3364:-192.029,0,-219.315	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.509	0/0:97:97,0:97:3468:0:0:0,-29.1999,-311.146	0/0:100:100,0:100:3562:0:0:0,-30.103,-319.185	0/0:97:97,0:97:3444:0:0:0,-29.1999,-307.889	0/0:74:74,0:74:2631:0:0:0,-22.2762,-236.665	0/1:70:36,34:36:1288:34:1199:-64.5448,0,-94.866	0/1:76:36,40:36:1279:40:1417:-71.2961,0,-92.2515	0/0:73:73,0:73:2603:0:0:0,-21.9752,-233.682	0/1:43:16,27:16:568:27:968:-51.4561,0,-38.3888	0/0:196:196,0:196:6991:0:0:0,-59.0019,-628.035	0/0:138:138,0:138:4890:0:0:0,-41.5421,-438.694	0/0:87:86,1:86:3071:1:36:0,-23.066,-272.786	0/0:78:78,0:78:2776:0:0:0,-23.4803,-249.701	0/1:141:57,84:57:2032:84:2999:-168.383,0,-139.703	0/0:50:50,0:50:1778:0:0:0,-15.0515,-159.708	0/1:409:198,211:198:7071:211:7517:-463.524,0,-512.202	0/0:177:177,0:177:6305:0:0:0,-53.2823,-561.835	0/1:32:18,14:18:639:14:492:-25.9299,0,-47.997	0/0:187:187,0:187:6682:0:0:0,-56.2926,-600.383	0/0:156:145,11:145:5182:11:392:0,-18.8384,-437.3	0/0:131:131,0:131:4679:0:0:0,-39.4349,-420.576	1/1:3:0,3:0:0:3:108:-7.89903,-0.90309,0	0/1:5:4,1:4:144:1:36:-1.31593,0,-11.6673	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.7104	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0498	0/0:214:214,0:214:7644:0:0:0,-64.4204,-686.268	0/0:127:126,1:126:4494:1:36:0,-35.4097,-399.862	0/1:69:28,41:28:970:41:1446:-76.594,0,-66.4456	0/0:7:7,0:7:224:0:0:0,-2.10721,-20.4454	0/1:220:84,136:84:2985:136:4880:-277.155,0,-202.038	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.1411	0/1:160:54,106:54:1932:106:3776:-219.02,0,-125.316	0/1:88:39,49:39:1392:49:1752:-102.586,0,-98.8292	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.156	0/0:77:77,0:77:2755:0:0:0,-23.1793,-247.504	0/0:60:60,0:60:2148:0:0:0,-18.0618,-191.122	0/0:141:141,0:141:5032:0:0:0,-42.4452,-452.017	0/0:97:97,0:97:3451:0:0:0,-29.1999,-310.162	0/1:195:94,101:94:3345:101:3612:-208.421,0,-242.095	0/0:150:150,0:150:5340:0:0:0,-45.1545,-479.233	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1745	0/1:123:46,77:46:1633:77:2734:-145.168,0,-109.683	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.0057	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2801	0/1:128:63,65:63:2235:65:2336:-125.208,0,-162.467	0/1:38:7,31:7:248:31:1101:-69.3983,0,-11.2099	0/1:8:5,3:5:180:3:108:-6.33795,0,-14.1268	0/1:29:19,10:19:684:10:360:-19.5652,0,-52.9936	0/0:93:93,0:93:3340:0:0:0,-27.9958,-299.564	0/0:147:147,0:147:5202:0:0:0,-44.2514,-467.07	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9364	0/0:507:506,1:506:18113:1:36:0,-149.499,-1623.3	0/0:233:233,0:233:8328:0:0:0,-70.14,-747.96	0/0:113:113,0:113:4033:0:0:0,-34.0164,-361.77	0/0:26:26,0:26:920:0:0:0,-7.82678,-82.9402	0/0:153:153,0:153:5465:0:0:0,-46.0576,-490.892	0/1:118:40,78:40:1414:78:2780:-167.129,0,-91.9404	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.9054	0/0:88:88,0:88:3156:0:0:0,-26.4906,-283.162	0/0:104:104,0:104:3706:0:0:0,-31.3071,-332.843	0/0:41:41,0:41:1453:0:0:0,-12.3422,-130.526	0/1:103:38,65:38:1351:65:2320:-123.733,0,-88.965	0/0:94:94,0:94:3361:0:0:0,-28.2968,-301.472	0/0:157:157,0:157:5585:0:0:0,-47.2617,-500.896	0/0:219:219,0:219:7833:0:0:0,-65.9256,-704.161	0/1:132:56,76:56:1992:76:2700:-140.836,0,-139.399	0/0:177:173,4:173:6146:4:144:0,-43.4825,-539.305	0/1:3:2,1:2:72:1:36:-1.74551,0,-5.91644	0/1:192:65,127:65:2327:127:4507:-261.413,0,-151.389	0/0:81:81,0:81:2912:0:0:0,-24.3834,-260.91	0/0:143:143,0:143:5110:0:0:0,-43.0473,-457.553	0/0:113:113,0:113:4051:0:0:0,-34.0164,-364.069	0/1:78:33,45:33:1176:45:1603:-91.5074,0,-82.1523	0/1:127:51,76:51:1824:76:2712:-163.951,0,-125.911	0/0:170:170,0:170:6069:0:0:0,-51.1751,-543.882	0/0:53:53,0:53:1837:0:0:0,-15.9546,-164.8	0/0:108:108,0:108:3823:0:0:0,-32.5112,-343.128	0/0:75:75,0:75:2666:0:0:0,-22.5772,-239.096	0/1:34:20,14:20:712:14:500:-25.1915,0,-53.5852	0/1:95:54,41:54:1912:41:1455:-75.0623,0,-142.922	0/1:79:20,59:20:716:59:2080:-131.399,0,-40.8508	0/0:194:194,0:194:6922:0:0:0,-58.3998,-622.18	0/0:101:101,0:101:3583:0:0:0,-30.404,-321.961
chr03	23913294	.	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chr03	23917904	.	A	C	18313.7	PASS	AB=0.443719;ABP=74.6272;AC=32;AF=0.170213;AN=188;AO=1163;CIGAR=1X;DP=9394;DPB=9394;DPRA=0.885553;EPP=2493.81;EPPR=17739.8;GTI=1;LEN=1;MEANALT=1.02778;MQM=59.5916;MQMR=59.984;NS=94;NUMALT=1;ODDS=10.6816;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41517;QR=294159;RO=8228;RPL=4;RPP=2493.81;RPPR=17739.8;RPR=1159;RUN=1;SAF=0;SAP=2528.43;SAR=1163;SRF=0;SRP=17869.9;SRR=8228;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:22,19:22:779:19:665:-47.7826,0,-58.0898	0/0:181:181,0:181:6457:0:0:0,-54.4864,-581.215	0/1:120:63,57:63:2245:57:2040:-147.723,0,-166.188	0/0:158:158,0:158:5655:0:0:0,-47.5627,-509.069	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.121	0/0:162:162,0:162:5793:0:0:0,-48.7669,-521.483	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.479	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.519	0/1:110:57,53:57:2044:53:1900:-138.165,0,-151.118	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.849	0/0:91:91,0:91:3226:0:0:0,-27.3937,-290.56	0/0:82:82,0:82:2914:0:0:0,-24.6845,-262.495	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	0/1:52:36,16:36:1292:16:563:-35.3456,0,-100.93	0/1:53:34,19:34:1216:19:665:-44.1685,0,-93.792	0/0:92:92,0:92:3269:0:0:0,-27.6948,-294.426	0/1:56:31,25:31:1108:25:881:-62.6123,0,-83.1733	0/0:240:240,0:240:8609:0:0:0,-72.2472,-774.801	0/0:147:147,0:147:5223:0:0:0,-44.2514,-470.21	0/0:157:157,0:157:5596:0:0:0,-47.2617,-503.763	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.437	0/1:132:87,45:87:3109:45:1616:-105.98,0,-240.3	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82	0/1:390:198,192:198:7030:192:6872:-501.135,0,-515.362	0/0:195:195,0:195:6979:0:0:0,-58.7008,-628.174	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/0:241:240,1:240:8592:1:36:0,-68.95,-769.675	0/0:188:183,5:183:6536:5:180:0,-40.0416,-571.773	0/0:118:118,0:118:4206:0:0:0,-35.5215,-378.719	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4433	0/1:27:18,9:18:640:9:324:-21.378,0,-49.8015	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:225:225,0:225:8039:0:0:0,-67.7317,-723.531	0/0:189:187,1:187:6677:1:36:0,-53.3552,-597.179	0/1:68:44,24:44:1580:24:864:-57.5611,0,-122.022	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:107:69,38:69:2476:38:1353:-89.8582,0,-190.883	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:99:54,45:54:1940:45:1592:-113.587,0,-145.074	0/1:70:50,20:50:1777:20:716:-43.6897,0,-139.139	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:128:128,0:128:4575:0:0:0,-38.5318,-411.915	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.554	0/0:133:133,0:133:4739:0:0:0,-40.037,-426.668	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:114:54,60:54:1936:60:2142:-158.689,0,-140.199	0/0:111:110,1:110:3933:1:36:0,-29.8161,-350.563	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:142:66,76:66:2376:76:2715:-201.776,0,-171.351	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	0/1:98:64,34:64:2284:34:1215:-80.141,0,-176.321	0/1:64:23,41:23:824:41:1468:-113.141,0,-55.2174	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:14:5,9:5:180:9:324:-25.2905,0,-12.3376	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/0:145:145,0:145:5164:0:0:0,-43.6493,-464.898	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:204:204,0:204:7315:0:0:0,-61.4101,-658.398	0/0:203:203,0:203:7248:0:0:0,-61.1091,-651.882	0/0:75:75,0:75:2654:0:0:0,-22.5772,-238.834	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:200:200,0:200:7161:0:0:0,-60.206,-644.544	0/1:102:35,67:35:1243:67:2391:-184.739,0,-81.4688	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.471	0/0:119:119,0:119:4255:0:0:0,-35.8226,-383.129	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:125:78,47:78:2788:47:1688:-114.339,0,-213.532	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.628	0/0:158:158,0:158:5640:0:0:0,-47.5627,-507.72	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.472	0/1:64:43,21:43:1539:21:756:-49.1013,0,-119.536	0/0:86:85,0:85:3056:0:0:0,-25.5875,-275.057	0/1:24:14,10:14:496:10:360:-25.5172,0,-37.7495	0/1:100:53,47:53:1908:47:1669:-120.392,0,-141.895	0/0:117:117,0:117:4193:0:0:0,-35.2205,-377.549	0/0:243:243,0:243:8711:0:0:0,-73.1503,-783.979	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.746	0/1:84:55,29:55:1955:29:1015:-66.37,0,-150.938	0/1:76:51,25:51:1820:25:887:-57.2528,0,-141.203	0/0:176:175,0:175:6254:0:0:0,-52.6802,-562.595	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/1:46:24,22:24:851:22:788:-57.3866,0,-63.0621	0/1:88:54,34:54:1931:34:1216:-83.2513,0,-147.575	0/1:73:30,43:30:1072:43:1540:-116.918,0,-74.8173	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:115:115,0:115:4076:0:0:0,-34.6184,-367.025
chr03	23917933	.	CC	TC,TT	209921	PASS	AB=0.551869,0.446987;ABP=64.2819,67.0149;AC=156,32;AF=0.829787,0.170213;AN=188;AO=8266,1182;CIGAR=1X1M,2X;DP=9461;DPB=9461.5;DPRA=0,0.89146;EPP=17917.7,2569.69;EPPR=11.6962;GTI=1;LEN=1,2;MEANALT=1.5,2.07895;MQM=59.9886,59.5854;MQMR=60;NS=94;NUMALT=2;ODDS=10.3653;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=295551,42066;QR=144;RO=4;RPL=8262,1182;RPP=17917.7,2569.69;RPPR=11.6962;RPR=4,0;RUN=1,1;SAF=0,0;SAP=17952.4,2569.69;SAR=8266,1182;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,22,20:0:0:22,20:788,720:-123.319,-59.0558,-52.4331,-64.6221,0,-58.6015	1/1:184:0,184,0:0:0:184,0:6588,0:-593.001,-55.3895,0,-593.001,-55.3895,-593.001	1/2:120:0,65,55:0:0:65,55:2319,1915:-345.085,-156.035,-136.468,-189.401,0,-172.845	1/1:161:0,161,0:0:0:161,0:5752,0:-517.796,-48.4658,0,-517.796,-48.4658,-517.796	1/1:58:0,57,0:0:0:57,0:2048,0:-184.232,-17.1587,0,-184.232,-17.1587,-184.232	1/1:49:0,49,0:0:0:49,0:1744,0:-157.244,-14.7505,0,-157.244,-14.7505,-157.244	1/1:163:0,163,0:0:0:163,0:5837,0:-525.441,-49.0679,0,-525.441,-49.0679,-525.441	1/1:109:0,109,0:0:0:109,0:3900,0:-351.194,-32.8123,0,-351.194,-32.8123,-351.194	1/1:99:0,99,0:0:0:99,0:3525,0:-317.414,-29.802,0,-317.414,-29.802,-317.414	1/2:110:0,55,55:0:0:55,55:1972,1961:-321.049,-160.208,-143.651,-161.198,0,-144.642	1/1:66:0,66,0:0:0:66,0:2364,0:-213.018,-19.868,0,-213.018,-19.868,-213.018	1/1:94:0,94,0:0:0:94,0:3364,0:-302.976,-28.2968,0,-302.976,-28.2968,-302.976	1/1:81:0,81,0:0:0:81,0:2908,0:-261.955,-24.3834,0,-261.955,-24.3834,-261.955	1/1:70:0,70,0:0:0:70,0:2481,0:-223.541,-21.0721,0,-223.541,-21.0721,-223.541	1/1:79:0,79,0:0:0:79,0:2836,0:-255.478,-23.7814,0,-255.478,-23.7814,-255.478	1/2:51:0,35,16:0:0:35,16:1260,576:-150.168,-47.3585,-36.8225,-103.169,0,-98.353	1/2:53:0,34,19:0:0:34,19:1219,684:-155.544,-56.1211,-45.8861,-99.7816,0,-94.062	1/1:93:0,93,0:0:0:93,0:3348,0:-301.531,-27.9958,0,-301.531,-27.9958,-301.531	1/2:58:0,33,25:0:0:33,25:1180,896:-169.515,-73.298,-63.3641,-96.5741,0,-89.0483	1/1:238:0,238,0:0:0:238,0:8482,0:-763.379,-71.6451,0,-763.379,-71.6451,-763.379	1/1:152:0,151,0:0:0:151,0:5363,0:-482.445,-45.4555,0,-482.445,-45.4555,-482.445	1/1:155:0,154,0:0:0:154,0:5484,0:-493.329,-46.3586,0,-493.329,-46.3586,-493.329	1/1:103:0,102,0:0:0:102,0:3656,0:-329.012,-30.7051,0,-329.012,-30.7051,-329.012	1/2:135:1,87,47:1:36:87,47:3096,1690:-386.947,-134.928,-111.675,-249.381,0,-238.17	1/1:92:0,92,0:0:0:92,0:3262,0:-293.799,-27.6948,0,-293.799,-27.6948,-293.799	1/2:389:0,195,194:0:0:195,194:6953,6915:-1130.79,-564.014,-505.313,-567.134,0,-508.735	1/1:192:0,192,0:0:0:192,0:6888,0:-619.986,-57.7978,0,-619.986,-57.7978,-619.986	1/2:21:0,10,11:0:0:10,11:356,396:-61.6846,-32.6714,-29.6611,-29.3709,0,-26.0596	1/1:239:0,237,1:0:0:237,1:8502,36:-764.848,-71.3441,0,-761.91,-68.3768,-761.609	1/1:192:0,187,5:0:0:187,5:6667,169:-599.767,-56.2926,0,-586.069,-42.2562,-584.564	1/1:116:0,116,0:0:0:116,0:4153,0:-373.951,-34.9195,0,-373.951,-34.9195,-373.951	1/2:6:0,4,2:0:0:4,2:140,72:-17.6186,-6.23466,-5.03054,-11.7405,0,-11.1384	1/2:29:0,19,9:0:0:19,9:680,324:-81.8872,-26.4368,-20.7172,-55.4499,0,-52.7406	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:230:0,230,0:0:0:230,0:8248,0:-742.329,-69.2369,0,-742.329,-69.2369,-742.329	1/1:188:1,186,1:1:36:186,1:6647,36:-594.683,-53.0542,0,-592.046,-53.0542,-594.683	1/2:68:0,44,24:0:0:44,24:1580,862:-199.514,-70.6262,-57.3808,-129.246,0,-122.022	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/2:109:0,70,39:0:0:70,39:2512,1389:-318.471,-113.568,-92.4957,-205.26,0,-193.52	1/1:43:0,43,0:0:0:43,0:1548,0:-139.613,-12.9443,0,-139.613,-12.9443,-139.613	1/2:99:0,52,47:0:0:52,47:1851,1649:-285.231,-134.369,-118.715,-151.216,0,-137.067	1/2:70:0,49,21:0:0:49,21:1760,752:-205.251,-61.6757,-46.9252,-143.933,0,-137.612	1/1:72:0,72,0:0:0:72,0:2580,0:-232.449,-21.6742,0,-232.449,-21.6742,-232.449	1/1:132:0,131,1:0:0:131,1:4677,34:-420.751,-39.4349,0,-417.993,-36.337,-417.692	1/1:102:0,102,0:0:0:102,0:3641,0:-327.834,-30.7051,0,-327.834,-30.7051,-327.834	1/1:137:0,137,0:0:0:137,0:4900,0:-441.152,-41.2411,0,-441.152,-41.2411,-441.152	1/1:73:0,73,0:0:0:73,0:2613,0:-235.418,-21.9752,0,-235.418,-21.9752,-235.418	1/2:114:0,55,59:0:0:55,59:1957,2104:-331.328,-171.837,-155.28,-159.847,0,-142.086	1/1:108:0,107,1:0:0:107,1:3836,36:-345.076,-32.2102,0,-342.139,-28.913,-341.838	1/1:8:0,8,0:0:0:8,0:273,0:-24.9002,-2.40824,0,-24.9002,-2.40824,-24.9002	1/2:143:0,66,77:0:0:66,77:2376,2731:-416.646,-222.774,-202.906,-194.229,0,-171.05	1/1:80:0,79,0:0:0:79,0:2831,0:-254.669,-23.7814,0,-254.669,-23.7814,-254.669	1/2:19:0,10,9:0:0:10,9:360,324:-56.1708,-26.7966,-23.7863,-29.734,0,-27.0247	1/2:98:0,65,33:0:0:65,33:2299,1188:-284.525,-97.2808,-77.7138,-187.602,0,-177.668	1/2:65:0,24,41:0:0:24,41:856,1476:-190.563,-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chr03	23950998	.	ACT	ACA,GCA	175535	PASS	AB=0.488496,0.507965;ABP=5.60838,4.25553;AC=152,32;AF=0.826087,0.173913;AN=184;AO=6903,1163;CIGAR=2M1X,1X1M1X;DP=8093;DPB=8094;DPRA=59.9259,1.1425;EPP=14931.9,2528.43;EPPR=13.8677;GTI=3;LEN=1,3;MEANALT=1.61111,2.19444;MQM=59.9965,59.9493;MQMR=60;NS=92;NUMALT=2;ODDS=1.29549;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=52,52;PQR=0;PRO=0;QA=242931,40926;QR=141;RO=5;RPL=7,0;RPP=14931.9,2528.43;RPPR=13.8677;RPR=6896,1163;RUN=1,1;SAF=0,0;SAP=14992.7,2528.43;SAR=6903,1163;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:85:0,41,44:0:0:41,44:1423,1543:-241.589,-125.915,-113.572,-116.023,0,-102.777	1/1:64:0,63,0:0:0:63,0:2240,0:-201.662,-18.9649,0,-201.662,-18.9649,-201.662	1/2:116:0,56,60:0:0:56,60:1975,2129:-334.629,-173.815,-156.958,-161.167,0,-143.105	1/1:232:0,231,1:0:0:231,1:8116,36:-730.114,-69.5379,0,-727.177,-66.2407,-726.875	1/1:130:0,130,0:0:0:130,0:4536,0:-408.418,-39.1339,0,-408.418,-39.1339,-408.418	1/1:64:0,64,0:0:0:64,0:2247,0:-202.494,-19.2659,0,-202.494,-19.2659,-202.494	1/1:27:0,27,0:0:0:27,0:956,0:-86.3557,-8.12781,0,-86.3557,-8.12781,-86.3557	1/1:193:0,192,0:0:0:192,0:6725,0:-605.09,-57.7978,0,-605.09,-57.7978,-605.09	1/1:113:0,113,0:0:0:113,0:3971,0:-357.588,-34.0164,0,-357.588,-34.0164,-357.588	1/2:92:0,42,50:0:0:42,50:1488,1741:-263.138,-141.918,-129.275,-121.571,0,-106.52	1/1:44:0,44,0:0:0:44,0:1564,0:-141.052,-13.2453,0,-141.052,-13.2453,-141.052	1/1:99:0,99,0:0:0:99,0:3420,0:-307.96,-29.802,0,-307.96,-29.802,-307.96	1/1:98:0,97,0:0:0:97,0:3401,0:-306.094,-29.1999,0,-306.094,-29.1999,-306.094	1/1:25:0,25,0:0:0:25,0:883,0:-79.7875,-7.52575,0,-79.7875,-7.52575,-79.7875	1/1:80:0,80,0:0:0:80,0:2835,0:-255.39,-24.0824,0,-255.39,-24.0824,-255.39	1/2:57:0,28,28:0:0:28,28:980,979:-158.738,-79.0031,-70.5742,-79.7246,0,-71.2958	1/2:42:0,19,23:0:0:19,23:668,791:-118.957,-64.5789,-58.8594,-54.7261,0,-47.8024	1/1:45:0,45,0:0:0:45,0:1599,0:-144.199,-13.5464,0,-144.199,-13.5464,-144.199	1/2:18:0,10,8:0:0:10,8:356,280:-52.1407,-23.1222,-20.1119,-29.3709,0,-26.9627	1/1:22:0,22,0:0:0:22,0:776,0:-70.1622,-6.62266,0,-70.1622,-6.62266,-70.1622	1/1:123:0,122,0:0:0:122,0:4236,0:-381.178,-36.7257,0,-381.178,-36.7257,-381.178	1/1:40:0,40,0:0:0:40,0:1416,0:-127.737,-12.0412,0,-127.737,-12.0412,-127.737	1/1:109:0,109,0:0:0:109,0:3852,0:-346.878,-32.8123,0,-346.878,-32.8123,-346.878	1/2:60:1,31,28:1:20:31,28:1078,994:-166.989,-79.6463,-71.808,-86.2966,0,-79.3621	1/1:61:0,60,0:0:0:60,0:2109,0:-189.719,-18.0618,0,-189.719,-18.0618,-189.719	1/2:239:0,114,125:0:0:114,125:4047,4432:-691.173,-361.425,-327.107,-330.103,0,-292.474	1/1:178:0,177,1:0:0:177,1:6221,36:-559.637,-53.2823,0,-556.7,-49.9851,-556.399	1/2:42:0,21,20:0:0:21,20:738,706:-117.593,-57.5249,-51.2033,-60.1004,0,-54.0798	1/1:227:1,223,1:1:28:223,1:7803,36:-699.483,-64.9234,0,-696.846,-64.1781,-698.764	1/1:138:0,130,6:0:0:130,6:4606,211:-414.377,-39.1339,0,-397.201,-21.8934,-395.395	1/1:104:0,103,0:0:0:103,0:3660,0:-329.326,-31.0061,0,-329.326,-31.0061,-329.326	1/2:9:0,7,2:0:0:7,2:248,72:-26.4331,-6.23466,-4.12745,-20.557,0,-19.9549	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:1:0,1,0:0:0:1,0:32,0:-3.19931,-0.30103,0,-3.19931,-0.30103,-3.19931	.:.:.:.:.:.:.:.	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:227:0,227,0:0:0:227,0:7994,0:-719.497,-68.3338,0,-719.497,-68.3338,-719.497	1/1:116:0,115,0:0:0:115,0:4027,0:-362.265,-34.6185,0,-362.265,-34.6185,-362.265	1/2:36:0,22,14:0:0:22,14:784,492:-104.306,-40.3981,-33.7754,-64.2613,0,-60.0468	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:104:0,54,49:0:0:54,49:1872,1721:-292.326,-140.171,-123.915,-152.251,0,-137.501	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:183:0,105,78:0:0:105,78:3649,2756:-521.464,-224.802,-193.194,-297.012,0,-273.532	1/2:95:0,43,52:0:0:43,52:1509,1780:-267.633,-144.823,-131.879,-123.157,0,-107.503	1/1:61:0,61,0:0:0:61,0:2166,0:-195.206,-18.3628,0,-195.206,-18.3628,-195.206	1/1:106:0,106,0:0:0:106,0:3723,0:-335.276,-31.9092,0,-335.276,-31.9092,-335.276	1/1:158:0,158,0:0:0:158,0:5609,0:-504.936,-47.5627,0,-504.936,-47.5627,-504.936	1/1:226:0,226,0:0:0:226,0:7995,0:-719.582,-68.0328,0,-719.582,-68.0328,-719.582	1/1:91:0,91,0:0:0:91,0:3211,0:-289.216,-27.3937,0,-289.216,-27.3937,-289.216	1/2:133:0,56,77:0:0:56,77:1980,2714:-382.588,-221.324,-204.466,-161.617,0,-138.438	1/1:62:0,62,0:0:0:62,0:2176,0:-196.106,-18.6639,0,-196.106,-18.6639,-196.106	1/1:7:0,7,0:0:0:7,0:244,0:-22.2994,-2.10721,0,-22.2994,-2.10721,-22.2994	1/2:97:0,55,42:0:0:55,42:1938,1469:-277.646,-119.857,-103.3,-158.14,0,-145.497	1/1:65:0,64,0:0:0:64,0:2267,0:-203.933,-19.2659,0,-203.933,-19.2659,-203.933	1/2:14:0,8,6:0:0:8,6:284,192:-38.948,-15.7878,-13.3796,-23.4951,0,-21.6889	1/2:89:0,46,41:0:0:46,41:1624,1425:-248.083,-115.832,-101.984,-132.232,0,-119.89	1/2:67:0,20,47:0:0:20,47:712,1637:-191.499,-133.466,-127.446,-58.3861,0,-44.2376	1/1:5:0,5,0:0:0:5,0:171,0:-15.7255,-1.50515,0,-15.7255,-1.50515,-15.7255	2/2:2:0,0,2:0:0:0,2:0,64:-6.0781,-6.0781,-6.0781,-0.60206,-0.60206,0	1/1:82:0,82,0:0:0:82,0:2912,0:-262.258,-24.6845,0,-262.258,-24.6845,-262.258	1/1:103:0,102,0:0:0:102,0:3580,0:-322.051,-30.7051,0,-322.051,-30.7051,-322.051	.:.:.:.:.:.:.:.	1/1:218:0,218,0:0:0:218,0:7720,0:-694.815,-65.6245,0,-694.815,-65.6245,-694.815	1/1:217:0,215,2:0:0:215,2:7599,72:-683.602,-64.7215,0,-677.727,-58.4868,-677.125	1/1:87:0,87,0:0:0:87,0:3064,0:-275.99,-26.1896,0,-275.99,-26.1896,-275.99	1/1:91:0,91,0:0:0:91,0:3193,0:-287.597,-27.3937,0,-287.597,-27.3937,-287.597	1/1:112:2,110,0:2:57:110,0:3874,0:-343.447,-28.3021,0,-344.049,-33.1133,-348.574	1/2:112:0,35,76:0:0:35,76:1228,2713:-321.111,-221.176,-210.64,-99.9282,0,-77.0499	1/1:30:0,30,0:0:0:30,0:1047,0:-94.5392,-9.0309,0,-94.5392,-9.0309,-94.5392	1/1:72:0,71,0:0:0:71,0:2429,0:-218.635,-21.3731,0,-218.635,-21.3731,-218.635	1/1:41:0,41,0:0:0:41,0:1455,0:-131.245,-12.3422,0,-131.245,-12.3422,-131.245	1/1:17:0,17,0:0:0:17,0:589,0:-53.3333,-5.11751,0,-53.3333,-5.11751,-53.3333	1/2:59:0,34,25:0:0:34,25:1196,888:-170.07,-72.7129,-62.4779,-97.7103,0,-90.1846	1/1:71:0,71,0:0:0:71,0:2492,0:-224.535,-21.3731,0,-224.535,-21.3731,-224.535	1/1:160:0,160,0:0:0:160,0:5636,0:-507.373,-48.1648,0,-507.373,-48.1648,-507.373	1/1:171:0,171,0:0:0:171,0:5984,0:-538.68,-51.4761,0,-538.68,-51.4761,-538.68	1/2:153:0,93,60:0:0:93,60:3303,2113:-441.517,-172.376,-144.38,-269.495,0,-251.433	1/1:121:0,120,0:0:0:120,0:4234,0:-381.044,-36.1236,0,-381.044,-36.1236,-381.044	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:63:0,33,30:0:0:33,30:1172,1074:-183.439,-87.9421,-78.0081,-95.8535,0,-86.8226	1/1:75:0,75,0:0:0:75,0:2632,0:-237.13,-22.5773,0,-237.13,-22.5773,-237.13	1/1:132:0,132,0:0:0:132,0:4644,0:-418.13,-39.736,0,-418.13,-39.736,-418.13	1/1:73:0,73,0:0:0:73,0:2586,0:-232.989,-21.9752,0,-232.989,-21.9752,-232.989	1/2:82:0,45,37:0:0:45,37:1572,1317:-235.559,-107.691,-94.1445,-128.221,0,-117.083	1/2:57:0,30,27:0:0:30,27:1046,953:-163.023,-77.9566,-68.9257,-85.4175,0,-77.2897	1/1:172:0,171,1:0:0:171,1:6001,36:-539.847,-51.4761,0,-536.909,-48.1789,-536.608	1/1:35:0,35,0:0:0:35,0:1224,0:-110.461,-10.5361,0,-110.461,-10.5361,-110.461	1/1:75:0,75,0:0:0:75,0:2616,0:-235.689,-22.5773,0,-235.689,-22.5773,-235.689	1/1:79:0,79,0:0:0:79,0:2765,0:-249.094,-23.7814,0,-249.094,-23.7814,-249.094	1/2:26:1,13,12:1:36:13,12:456,432:-69.115,-32.3116,-31.3356,-34.1626,0,-33.4883	1/2:64:0,25,39:0:0:25,39:888,1359:-183.228,-110.867,-103.341,-72.7133,0,-60.9731	1/2:66:0,18,48:0:0:18,48:648,1697:-191.442,-138.566,-133.148,-53.2333,0,-38.7839	1/1:97:0,97,0:0:0:97,0:3444,0:-310.175,-29.1999,0,-310.175,-29.1999,-310.175	1/1:130:0,129,0:0:0:129,0:4558,0:-410.108,-38.8329,0,-410.108,-38.8329,-410.108
chr03	24020155	.	C	T	226229	PASS	AB=0.496256;ABP=3.49815;AC=157;AF=0.835106;AN=188;AO=10299;CIGAR=1X;DP=12348;DPB=12348;DPRA=0;EPP=22219.6;EPPR=4383.02;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.9573;MQMR=59.9701;NS=94;NUMALT=1;ODDS=5.74163;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=368235;QR=72742;RO=2041;RPL=18;RPP=22210.9;RPPR=4383.02;RPR=10281;RUN=1;SAF=1;SAP=22358.3;SAR=10298;SRF=0;SRP=4434.99;SRR=2041;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:98:46,52:46:1631:52:1864:-138.538,0,-117.577	1/1:296:1,295:1:36:295:10558:-946.428,-85.5066,0	0/1:245:132,113:132:4731:113:4030:-289.136,0,-352.195	1/1:290:2,288:2:72:288:10340:-923.637,-80.462,0	1/1:95:0,95:0:0:95:3383:-304.675,-28.5979,0	1/1:86:1,85:1:36:85:3048:-270.951,-22.2903,0	1/1:201:0,201:0:0:201:7191:-647.215,-60.507,0	1/1:180:0,180:0:0:180:6429:-578.071,-54.1854,0	1/1:135:0,135:0:0:135:4832:-435.033,-40.6391,0	0/1:113:35,77:35:1230:77:2745:-213.217,0,-76.9275	1/1:125:0,125:0:0:125:4450:-400.67,-37.6288,0	1/1:107:0,107:0:0:107:3794:-341.657,-32.2102,0	1/1:103:0,103:0:0:103:3667:-330.235,-31.0061,0	1/1:167:0,167:0:0:167:5966:-536.959,-50.272,0	1/1:76:0,76:0:0:76:2703:-243.512,-22.8783,0	0/1:88:37,51:37:1296:51:1836:-139.03,0,-90.4477	0/1:126:61,65:61:2156:65:2315:-170.68,0,-156.375	1/1:94:0,94:0:0:94:3355:-302.166,-28.2968,0	0/1:85:38,47:38:1368:47:1659:-124.009,0,-97.8333	1/1:232:0,231:0:0:231:8281:-744.937,-69.5379,0	1/1:203:1,202:1:36:202:7256:-649.489,-57.5108,0	1/1:127:1,126:1:36:126:4504:-401.633,-34.6325,0	1/1:144:0,144:0:0:144:5172:-465.618,-43.3483,0	0/1:179:86,93:86:3054:93:3340:-246.932,0,-221.205	1/1:111:0,111:0:0:111:3954:-356.05,-33.4143,0	0/1:370:198,171:198:7072:171:6101:-437.753,0,-525.1	1/1:263:1,262:1:36:262:9341:-837.054,-75.5726,0	0/1:37:16,21:16:552:21:756:-57.2291,0,-38.8648	1/1:279:0,279:0:0:279:9997:-899.664,-83.9874,0	1/1:152:1,151:1:36:151:5404:-482.891,-42.1583,0	1/1:128:0,128:0:0:128:4590:-413.263,-38.5318,0	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:28:12,16:12:428:16:576:-43.7461,0,-30.43	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:221:0,221:0:0:221:7905:-711.473,-66.5276,0	1/1:167:5,162:5:180:162:5803:-505.83,-33.7199,0	0/1:177:86,91:86:3060:91:3238:-238.359,0,-222.345	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:313:105,208:105:3752:208:7439:-575.331,0,-243.658	1/1:81:0,81:0:0:81:2889:-260.245,-24.3834,0	0/1:208:116,91:116:4147:91:3241:-228.381,0,-310.74	0/1:130:66,64:66:2372:64:2292:-167.407,0,-174.604	1/1:67:0,67:0:0:67:2395:-215.316,-20.169,0	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:112:0,112:0:0:112:3984:-358.75,-33.7154,0	1/1:207:0,207:0:0:207:7399:-665.956,-62.3132,0	1/1:163:0,163:0:0:163:5868:-528.227,-49.0679,0	0/1:144:65,79:65:2328:79:2828:-211.411,0,-166.432	1/1:166:2,164:2:72:164:5879:-522.383,-43.1347,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:149:58,90:58:2067:90:3219:-245.02,0,-141.388	1/1:79:0,79:0:0:79:2819:-253.949,-23.7814,0	0/1:46:28,18:28:985:18:648:-44.8045,0,-75.1141	0/1:178:95,83:95:3383:83:2950:-212.149,0,-251.103	1/1:100:1,99:1:36:99:3506:-312.15,-26.5047,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:44:27,17:27:968:17:612:-42.1681,0,-74.192	1/1:161:0,161:0:0:161:5759:-518.423,-48.4658,0	1/1:187:2,185:2:72:185:6610:-588.115,-49.4559,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:123:1,122:1:36:122:4329:-384.999,-33.4284,0	1/1:195:0,195:0:0:195:6987:-628.892,-58.7009,0	1/1:95:0,95:0:0:95:3383:-304.685,-28.5979,0	1/1:82:0,82:0:0:82:2929:-263.844,-24.6845,0	1/1:199:3,196:3:108:196:7027:-622.414,-49.8298,0	0/1:207:149,58:149:5339:58:2084:-125.517,0,-418.329	1/1:85:0,85:0:0:85:3030:-272.931,-25.5876,0	1/1:110:1,109:1:36:109:3855:-343.547,-29.515,0	1/1:115:1,114:1:36:114:4055:-361.538,-31.0202,0	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	0/1:122:62,60:62:2216:60:2148:-156.862,0,-162.979	1/1:115:0,115:0:0:115:4103:-369.455,-34.6185,0	1/1:328:0,328:0:0:328:11713:-1054.03,-98.7378,0	1/1:143:1,142:1:36:142:5088:-454.453,-39.449,0	0/1:104:61,43:61:2175:43:1537:-107.269,0,-164.709	1/1:108:0,108:0:0:108:3880:-349.393,-32.5112,0	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/1:115:60,55:60:2127:55:1970:-142.956,0,-157.08	1/1:109:0,109:0:0:109:3905:-351.641,-32.8123,0	1/1:147:0,147:0:0:147:5249:-472.547,-44.2514,0	1/1:157:3,154:3:104:154:5508:-487.175,-38.5922,0	0/1:80:43,37:43:1544:37:1313:-94.3873,0,-115.171	0/1:109:45,64:45:1607:64:2291:-173.638,0,-112.107	1/1:177:0,176:0:0:176:6308:-567.452,-52.9813,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	1/1:83:0,83:0:0:83:2972:-267.713,-24.9855,0	0/1:157:84,73:84:2979:73:2611:-187.976,0,-221.082	0/1:216:106,110:106:3747:110:3947:-290.393,0,-272.409	0/1:105:77,27:77:2748:27:968:-55.7705,0,-215.896	1/1:143:0,143:0:0:143:5109:-459.95,-43.0473,0	1/1:137:0,136:0:0:136:4883:-439.261,-40.9401,0
chr03	24094781	.	CCCTTC	ACCTG,ACCTTC	137465	PASS	AB=0.506604,0.489623;ABP=3.81334,4.9933;AC=153,31;AF=0.831522,0.168478;AN=184;AO=6129,1052;CIGAR=1X2M1D1M1X,1X5M;DP=7223;DPB=6194.5;DPRA=0,0.946528;EPP=13018.3,2261.42;EPPR=0;GTI=0;LEN=6,1;MEANALT=1.81522,2.35135;MQM=34.2766,59.6435;MQMR=0;NS=92;NUMALT=2;ODDS=5.22172;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=216583,37669;QR=0;RO=0;RPL=34,3;RPP=13018.3,2261.42;RPPR=0;RPR=6095,1049;RUN=1,1;SAF=0,0;SAP=13312,2287.4;SAR=6129,1052;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,21,17:0:0:21,17:734,612:-100.417,-50.2713,-43.9497,-50.4779,0,-45.3604	1/1:109:0,109,0:0:0:109,0:3886,0:-293.249,-32.8123,0,-293.249,-32.8123,-293.249	1/2:92:0,52,39:0:0:52,39:1848,1398:-239.639,-114.035,-98.3812,-125.647,0,-113.906	1/1:187:0,186,0:0:0:186,0:6581,0:-540.225,-55.9916,0,-540.225,-55.9916,-540.225	1/1:85:0,85,0:0:0:85,0:3003,0:-234.555,-25.5876,0,-234.555,-25.5876,-234.555	1/1:47:0,47,0:0:0:47,0:1663,0:-125.32,-14.1484,0,-125.32,-14.1484,-125.32	1/1:105:0,105,0:0:0:105,0:3701,0:-304.563,-31.6082,0,-304.563,-31.6082,-304.563	1/1:159:0,158,0:0:0:158,0:5593,0:-421.601,-47.5627,0,-421.601,-47.5627,-421.601	1/1:58:0,57,0:0:0:57,0:2013,0:-154.672,-17.1587,0,-154.672,-17.1587,-154.672	1/2:87:0,37,50:0:0:37,50:1310,1788:-242.123,-146.139,-135.001,-96.3208,0,-81.2693	1/1:24:0,24,0:0:0:24,0:827,0:-65.913,-7.22472,0,-65.913,-7.22472,-65.913	1/1:47:0,45,1:0:0:45,1:1582,36:-119.675,-13.5464,0,-116.744,-10.5419,-116.443	1/1:32:0,32,0:0:0:32,0:1111,0:-83.1726,-9.63296,0,-83.1726,-9.63296,-83.1726	1/1:31:0,31,0:0:0:31,0:1098,0:-87.5807,-9.33193,0,-87.5807,-9.33193,-87.5807	1/1:36:0,36,0:0:0:36,0:1292,0:-105.763,-10.8371,0,-105.763,-10.8371,-105.763	1/2:22:0,14,8:0:0:14,8:494,288:-58.1328,-23.8592,-19.6447,-34.6138,0,-32.2056	1/2:40:0,25,15:0:0:25,15:872,540:-103.045,-44.4211,-36.8953,-58.9593,0,-54.4439	1/1:25:0,25,0:0:0:25,0:886,0:-68.2973,-7.52575,0,-68.2973,-7.52575,-68.2973	1/2:14:0,7,7:0:0:7,7:250,252:-37.7334,-20.683,-18.5758,-17.3807,0,-15.2735	1/1:142:0,141,0:0:0:141,0:5009,0:-409.019,-42.4452,0,-409.019,-42.4452,-409.019	1/1:75:0,75,0:0:0:75,0:2628,0:-208.883,-22.5773,0,-208.883,-22.5773,-208.883	1/1:121:0,119,0:0:0:119,0:4227,0:-351.345,-35.8226,0,-351.345,-35.8226,-351.345	1/1:106:0,105,0:0:0:105,0:3720,0:-302.444,-31.6082,0,-302.444,-31.6082,-302.444	1/2:135:0,77,56:0:0:77,56:2735,2008:-354.632,-163.855,-140.675,-190.834,0,-173.977	1/1:77:0,76,0:0:0:76,0:2683,0:-209.929,-22.8783,0,-209.929,-22.8783,-209.929	1/2:495:0,252,242:0:0:252,242:8887,8661:-1378.18,-706.258,-630.398,-671.908,0,-599.059	1/1:159:0,158,0:0:0:158,0:5580,0:-439.003,-47.5627,0,-439.003,-47.5627,-439.003	1/2:26:0,11,15:0:0:11,15:387,540:-72.1378,-44.4211,-41.1098,-28.0499,0,-23.5345	1/1:145:0,145,0:0:0:145,0:5119,0:-430.901,-43.6494,0,-430.901,-43.6494,-430.901	1/1:137:0,132,5:0:0:132,5:4692,180:-368.794,-39.736,0,-354.105,-24.689,-352.6	1/1:162:0,160,0:0:0:160,0:5615,0:-456.51,-48.1648,0,-456.51,-48.1648,-456.51	1/2:6:0,2,4:0:0:2,4:72,144:-17.2315,-12.1095,-11.5074,-5.45443,0,-4.25031	1/2:5:0,2,3:0:0:2,3:72,108:-14.1689,-9.17208,-8.57002,-5.32799,0,-4.4249	1/1:1:0,1,0:0:0:1,0:36,0:-3.05454,-0.30103,0,-3.05454,-0.30103,-3.05454	1/1:3:0,3,0:0:0:3,0:106,0:-8.49029,-0.90309,0,-8.49029,-0.90309,-8.49029	.:.:.:.:.:.:.:.	1/1:115:0,114,0:0:0:114,0:4046,0:-339.828,-34.3174,0,-339.828,-34.3174,-339.828	1/1:220:0,219,0:0:0:219,0:7742,0:-610.431,-65.9256,0,-610.431,-65.9256,-610.431	1/2:31:0,19,12:0:0:19,12:651,432:-78.6904,-35.6088,-29.8893,-43.4126,0,-39.8003	1/1:1:0,1,0:0:0:1,0:36,0:-3.18762,-0.30103,0,-3.18762,-0.30103,-3.18762	1/2:98:0,52,46:0:0:52,46:1843,1644:-263.488,-134.391,-118.738,-129.431,0,-115.584	1/1:11:0,11,0:0:0:11,0:395,0:-30.505,-3.31133,0,-30.505,-3.31133,-30.505	1/2:141:0,79,62:0:0:79,62:2753,2216:-374.882,-180.981,-157.2,-194.236,0,-175.572	1/2:38:0,17,21:0:0:17,21:598,734:-102.669,-60.017,-54.8995,-42.9811,0,-36.6595	1/1:28:0,28,0:0:0:28,0:997,0:-81.22,-8.42884,0,-81.22,-8.42884,-81.22	1/1:110:0,110,0:0:0:110,0:3876,0:-327.904,-33.1133,0,-327.904,-33.1133,-327.904	1/1:105:0,105,0:0:0:105,0:3689,0:-279.691,-31.6082,0,-279.691,-31.6082,-279.691	1/1:162:0,161,0:0:0:161,0:5703,0:-467.677,-48.4658,0,-467.677,-48.4658,-467.677	1/1:108:0,105,2:0:0:105,2:3721,68:-303.383,-31.6082,0,-297.867,-26.0303,-297.265	1/2:86:0,46,40:0:0:46,40:1636,1421:-236.185,-116.144,-102.297,-120.382,0,-108.34	1/1:97:0,97,0:0:0:97,0:3441,0:-285.18,-29.1999,0,-285.18,-29.1999,-285.18	.:.:.:.:.:.:.:.	1/2:80:0,43,37:0:0:43,37:1514,1324:-210.615,-108.316,-95.3715,-102.629,0,-91.491	1/1:40:0,39,0:0:0:39,0:1373,0:-115.716,-11.7402,0,-115.716,-11.7402,-115.716	1/2:14:0,2,12:0:0:2,12:71,428:-40.099,-35.2382,-34.6362,-5.17222,0,-1.55986	1/2:76:0,42,34:0:0:42,34:1474,1207:-202.391,-98.6662,-86.0229,-104.058,0,-93.8233	1/1:46:0,46,0:0:0:46,0:1618,0:-131.273,-13.8474,0,-131.273,-13.8474,-131.273	1/2:6:0,2,4:0:0:2,4:72,140:-16.555,-11.7405,-11.1384,-5.13233,0,-3.92821	1/2:17:0,3,13:0:0:3,13:107,468:-46.3683,-38.1865,-37.2834,-8.168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chr03	24115803	.	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chr03	24132111	.	C	G	17861.5	PASS	AB=0.388064;ABP=354.969;AC=30;AF=0.159574;AN=188;AO=1262;CIGAR=1X;DP=12617;DPB=12617;DPRA=0.826826;EPP=2743.41;EPPR=24651.4;GTI=4;LEN=1;MEANALT=1;MQM=59.4192;MQMR=55.8949;NS=94;NUMALT=1;ODDS=1.89118;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44534;QR=401399;RO=11351;RPL=0;RPP=2743.41;RPPR=449.075;RPR=1262;RUN=1;SAF=0;SAP=2743.41;SAR=1262;SRF=4912;SRP=449.075;SRR=6439;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:19,17:19:671:17:595:-43.0139,0,-49.8539	0/0:197:197,0:197:7033:0:0:0,-59.3029,-629.723	0/1:216:139,77:139:4935:77:2666:-174.911,0,-377.882	0/0:428:427,1:427:15067:1:36:0,-125.243,-1347.63	0/0:132:132,0:132:4643:0:0:0,-39.736,-416.516	0/0:92:92,0:92:3278:0:0:0,-27.6948,-292.496	0/0:239:239,0:239:8432:0:0:0,-71.9462,-756.152	0/0:273:273,0:273:9690:0:0:0,-82.1812,-868.852	0/0:107:106,1:106:3768:1:32:0,-29.0109,-334.698	0/1:118:80,38:80:2817:38:1346:-85.8546,0,-217.829	0/0:109:109,0:109:3817:0:0:0,-32.8123,-343.484	0/0:115:115,0:115:4063:0:0:0,-34.6184,-364.341	0/0:118:118,0:118:4186:0:0:0,-35.5215,-375.941	0/0:113:113,0:113:3975:0:0:0,-34.0164,-355.649	0/0:100:100,0:100:3552:0:0:0,-30.103,-318.755	0/1:66:38,28:38:1318:28:1008:-71.1684,0,-98.7439	0/1:124:67,57:67:2391:57:2013:-144.082,0,-177.568	0/0:98:98,0:98:3459:0:0:0,-29.5009,-310.481	0/1:66:40,26:40:1415:26:932:-64.1903,0,-106.15	0/0:280:280,0:280:9892:0:0:0,-84.2884,-887.086	0/0:170:170,0:170:5984:0:0:0,-51.1751,-536.196	0/0:107:106,0:106:3724:0:0:0,-31.9092,-333.692	0/0:74:74,0:74:2635:0:0:0,-22.2762,-235.7	0/1:152:101,51:101:3568:51:1815:-117.856,0,-274.733	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.113	0/1:296:181,115:181:6457:115:4081:-278.294,0,-491.478	0/0:289:289,0:289:10240:0:0:0,-86.9977,-918.071	0/1:53:32,21:32:1118:21:735:-50.5168,0,-84.4938	0/0:366:365,0:365:12916:0:0:0,-109.876,-1159.37	0/0:157:155,2:155:5503:2:72:0,-40.425,-484.109	0/0:153:153,0:153:5382:0:0:0,-46.0576,-481.116	0/1:10:4,6:4:144:6:206:-15.8645,0,-10.2597	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.3641	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.4499	0/0:18:18,0:18:623:0:0:0,-5.41854,-56.2834	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.6096	0/0:278:277,0:277:9710:0:0:0,-83.3853,-872.143	0/0:219:219,0:219:7729:0:0:0,-65.9256,-691.48	0/1:107:67,40:67:2371:40:1409:-94.895,0,-180.93	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.34506	0/1:222:154,68:154:5425:68:2386:-148.162,0,-417.206	0/0:66:66,0:66:2297:0:0:0,-19.868,-206.362	0/1:135:92,43:92:3258:43:1518:-96.1389,0,-250.625	0/1:74:47,27:47:1676:27:952:-63.6819,0,-128.714	0/0:82:82,0:82:2881:0:0:0,-24.6845,-259.06	0/0:119:119,0:119:4224:0:0:0,-35.8226,-379.389	0/0:217:217,0:217:7752:0:0:0,-65.3235,-694.976	0/0:287:287,0:287:10149:0:0:0,-86.3956,-911.681	0/0:123:123,0:123:4333:0:0:0,-37.0267,-388.747	0/1:227:104,123:104:3704:123:4341:-322.485,0,-263.601	0/0:182:182,0:182:6417:0:0:0,-54.7875,-575.989	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9976	0/1:189:128,61:128:4563:61:2179:-139.234,0,-352.274	0/0:58:58,0:58:2020:0:0:0,-17.4597,-181.544	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.2351	0/1:144:83,61:83:2945:61:2149:-148.979,0,-220.964	0/0:49:47,2:47:1649:2:72:0,-7.91375,-141.346	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99251	0/1:23:18,5:18:639:5:180:-9.62837,0,-50.756	0/0:90:90,0:90:3206:0:0:0,-27.0927,-285.912	0/0:128:128,0:128:4544:0:0:0,-38.5318,-408.511	0/0:13:13,0:13:445:0:0:0,-3.91339,-39.1578	0/0:229:229,0:229:8125:0:0:0,-68.9359,-729.583	0/0:282:282,0:282:9983:0:0:0,-84.8905,-895.432	0/0:134:134,0:134:4711:0:0:0,-40.338,-423.305	0/0:160:160,0:160:5719:0:0:0,-48.1648,-512.915	0/0:177:176,1:176:6203:1:27:0,-50.5825,-554.435	0/1:86:42,44:42:1500:44:1569:-115.593,0,-107.986	0/0:55:55,0:55:1948:0:0:0,-16.5566,-175.483	0/0:138:138,0:138:4899:0:0:0,-41.5421,-439.803	0/0:138:137,0:137:4825:0:0:0,-41.2411,-432.493	0/0:31:31,0:31:1099:0:0:0,-9.33193,-98.8991	0/1:131:87,44:87:3094:44:1526:-97.9096,0,-238.259	0/0:107:107,0:107:3787:0:0:0,-32.2102,-339.673	0/0:263:263,0:263:9279:0:0:0,-79.1709,-833.286	0/0:278:278,0:278:9889:0:0:0,-83.6863,-888.481	0/1:156:115,41:115:4076:41:1472:-85.7942,0,-318.204	0/0:199:199,0:199:7069:0:0:0,-59.905,-633.359	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.5902	0/1:176:109,67:109:3881:67:2363:-159.935,0,-295.156	0/0:230:230,0:230:8155:0:0:0,-69.2369,-731.252	0/0:399:399,0:399:14190:0:0:0,-120.111,-1274.82	0/0:130:130,0:130:4523:0:0:0,-39.1339,-406.372	0/1:74:43,31:43:1527:31:1091:-76.2216,0,-115.098	0/1:84:47,37:47:1652:37:1300:-91.9938,0,-123.487	0/0:192:192,0:192:6697:0:0:0,-57.7978,-598.994	0/0:63:63,0:63:2207:0:0:0,-18.9649,-198.04	0/0:110:110,0:110:3858:0:0:0,-33.1133,-346.387	0/0:112:112,0:112:3971:0:0:0,-33.7154,-354.528	0/1:54:31,23:31:1087:23:820:-57.8424,0,-81.4954	0/1:119:61,58:61:2133:58:2031:-147.084,0,-155.459	0/1:75:35,40:35:1193:40:1396:-103.349,0,-85.0577	0/0:62:62,0:62:2163:0:0:0,-18.6639,-193.978	0/0:157:157,0:157:5539:0:0:0,-47.2617,-498.132
chr03	24153526	.	AT	GA,AA	101118	PASS	AB=0.434753,0.563218;ABP=57.6994,54.3519;AC=157,31;AF=0.835106,0.164894;AN=188;AO=3862,838;CIGAR=2X,1M1X;DP=4709;DPB=4709.5;DPRA=0,1.02576;EPP=8389.24,1822.7;EPPR=0;GTI=0;LEN=2,1;MEANALT=1.45745,2.08824;MQM=59.646,59.9117;MQMR=0;NS=94;NUMALT=2;ODDS=2.36597;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=135179,29773;QR=0;RO=0;RPL=0,0;RPP=8389.24,1822.7;RPPR=0;RPR=3862,838;RUN=1,1;SAF=0,0;SAP=8389.24,1822.7;SAR=3862,838;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,12,10:0:0:12,10:419,349:-62.7657,-28.7338,-25.1214,-34.3806,0,-31.3703	1/1:37:0,37,0:0:0:37,0:1302,0:-117.471,-11.1381,0,-117.471,-11.1381,-117.471	1/2:101:0,55,46:0:0:55,46:1906,1626:-287.663,-132.775,-116.219,-155.238,0,-141.39	1/1:129:0,129,0:0:0:129,0:4553,0:-409.734,-38.8329,0,-409.734,-38.8329,-409.734	1/1:28:0,28,0:0:0:28,0:980,0:-88.5068,-8.42884,0,-88.5068,-8.42884,-88.5068	1/1:24:0,24,0:0:0:24,0:857,0:-77.4353,-7.22472,0,-77.4353,-7.22472,-77.4353	1/1:50:0,50,0:0:0:50,0:1758,0:-158.47,-15.0515,0,-158.47,-15.0515,-158.47	1/1:84:0,84,0:0:0:84,0:2909,0:-262.028,-25.2865,0,-262.028,-25.2865,-262.028	1/1:33:0,33,0:0:0:33,0:1127,0:-101.721,-9.93399,0,-101.721,-9.93399,-101.721	1/2:48:0,27,21:0:0:27,21:961,743:-139.196,-60.8717,-52.7439,-78.6788,0,-72.3572	1/1:16:0,16,0:0:0:16,0:555,0:-50.2694,-4.81648,0,-50.2694,-4.81648,-50.2694	1/1:36:0,36,0:0:0:36,0:1243,0:-112.103,-10.8371,0,-112.103,-10.8371,-112.103	1/1:25:0,25,0:0:0:25,0:871,0:-78.7046,-7.52575,0,-78.7046,-7.52575,-78.7046	1/1:13:0,13,0:0:0:13,0:461,0:-41.8259,-3.91339,0,-41.8259,-3.91339,-41.8259	1/1:27:0,27,0:0:0:27,0:955,0:-86.2642,-8.12781,0,-86.2642,-8.12781,-86.2642	1/2:27:0,12,15:0:0:12,15:414,527:-76.8019,-43.1734,-39.5611,-33.9759,0,-29.4605	1/2:12:0,3,9:0:0:3,9:108,324:-35.6088,-26.7966,-25.8935,-9.17208,0,-6.46281	1/1:13:0,13,0:0:0:13,0:448,0:-40.6487,-3.91339,0,-40.6487,-3.91339,-40.6487	1/2:11:0,5,6:0:0:5,6:173,206:-31.0821,-17.0222,-15.517,-14.4042,0,-12.598	1/1:111:0,111,0:0:0:111,0:3946,0:-355.326,-33.4143,0,-355.326,-33.4143,-355.326	1/1:106:0,106,0:0:0:106,0:3659,0:-329.49,-31.9092,0,-329.49,-31.9092,-329.49	1/1:36:0,36,0:0:0:36,0:1256,0:-113.341,-10.8371,0,-113.341,-10.8371,-113.341	1/1:77:0,77,0:0:0:77,0:2684,0:-241.732,-23.1793,0,-241.732,-23.1793,-241.732	1/2:31:0,19,12:0:0:19,12:674,428:-90.1545,-35.2464,-29.5269,-55.2638,0,-51.6514	1/1:10:0,10,0:0:0:10,0:351,0:-31.9275,-3.0103,0,-31.9275,-3.0103,-31.9275	1/2:173:0,78,95:0:0:78,95:2741,3392:-499.994,-276.898,-253.418,-223.45,0,-194.852	1/1:106:0,106,0:0:0:106,0:3720,0:-334.966,-31.9092,0,-334.966,-31.9092,-334.966	1/2:10:0,3,7:0:0:3,7:106,248:-29.1895,-20.557,-19.6539,-8.98601,0,-6.8788	1/1:167:0,167,0:0:0:167,0:5829,0:-524.659,-50.272,0,-524.659,-50.272,-524.659	1/1:101:0,99,2:0:0:99,2:3517,72:-316.175,-29.802,0,-310.3,-23.5673,-309.698	1/1:56:0,55,0:0:0:55,0:1925,0:-173.207,-16.5567,0,-173.207,-16.5567,-173.207	1/2:6:0,1,5:0:0:1,5:25,176:-16.6117,-14.6799,-14.3788,-2.19883,0,-0.693683	1/2:14:0,4,10:0:0:4,10:144,360:-41.4837,-29.734,-28.5299,-12.1095,0,-9.0992	1/1:6:0,6,0:0:0:6,0:209,0:-19.1505,-1.80618,0,-19.1505,-1.80618,-19.1505	1/1:6:0,6,0:0:0:6,0:196,0:-17.96,-1.80618,0,-17.96,-1.80618,-17.96	1/1:10:0,10,0:0:0:10,0:356,0:-32.3732,-3.0103,0,-32.3732,-3.0103,-32.3732	1/1:73:0,73,0:0:0:73,0:2571,0:-231.637,-21.9752,0,-231.637,-21.9752,-231.637	1/1:63:0,63,0:0:0:63,0:2216,0:-199.7,-18.9649,0,-199.7,-18.9649,-199.7	1/2:14:0,8,6:0:0:8,6:282,216:-40.9411,-17.9843,-15.5761,-23.3134,0,-21.5072	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:102:0,38,64:0:0:38,64:1343,2270:-294.646,-185.296,-173.857,-109.704,0,-90.4385	1/1:12:0,12,0:0:0:12,0:425,0:-38.4564,-3.61236,0,-38.4564,-3.61236,-38.4564	1/2:55:0,30,25:0:0:30,25:1020,896:-156.12,-73.4346,-64.4037,-83.0349,0,-75.5091	1/2:21:0,10,11:0:0:10,11:351,378:-59.6076,-31.0378,-28.0275,-28.9171,0,-25.6058	1/1:23:0,23,0:0:0:23,0:774,0:-69.9677,-6.92369,0,-69.9677,-6.92369,-69.9677	1/1:75:0,75,0:0:0:75,0:2611,0:-235.096,-22.5773,0,-235.096,-22.5773,-235.096	1/1:76:0,76,0:0:0:76,0:2632,0:-237.089,-22.8783,0,-237.089,-22.8783,-237.089	1/1:84:0,84,0:0:0:84,0:2933,0:-264.101,-25.2865,0,-264.101,-25.2865,-264.101	1/1:39:0,39,0:0:0:39,0:1368,0:-123.413,-11.7402,0,-123.413,-11.7402,-123.413	1/2:124:0,53,71:0:0:53,71:1887,2510:-358.573,-204.778,-188.823,-154.15,0,-132.777	1/1:62:0,61,0:0:0:61,0:2145,0:-192.953,-18.3628,0,-192.953,-18.3628,-192.953	1/1:12:0,12,0:0:0:12,0:419,0:-38.0419,-3.61236,0,-38.0419,-3.61236,-38.0419	1/2:65:0,29,35:0:0:29,35:1038,1247:-186.405,-101.765,-93.0347,-84.7622,0,-74.2261	1/1:27:0,27,0:0:0:27,0:954,0:-86.1751,-8.12781,0,-86.1751,-8.12781,-86.1751	1/2:15:0,9,6:0:0:9,6:312,208:-42.6106,-17.2529,-14.5436,-25.7042,0,-23.898	1/2:113:0,60,53:0:0:60,53:2107,1873:-324.354,-152.893,-134.831,-171.814,0,-155.859	1/1:22:0,22,0:0:0:22,0:774,0:-69.955,-6.62266,0,-69.955,-6.62266,-69.955	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/2:12:0,3,9:0:0:3,9:108,320:-35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chr03	24185052	.	T	A	25115.6	PASS	AB=0.465502;ABP=37.3201;AC=31;AF=0.164894;AN=188;AO=1565;CIGAR=1X;DP=12210;DPB=12210;DPRA=1.03472;EPP=3401.36;EPPR=23105.3;GTI=1;LEN=1;MEANALT=1.02326;MQM=59.9827;MQMR=59.9897;NS=94;NUMALT=1;ODDS=2.53911;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56009;QR=380447;RO=10639;RPL=0;RPP=3401.36;RPPR=23105.3;RPR=1565;RUN=1;SAF=1565;SAP=3401.36;SAR=0;SRF=10639;SRP=23105.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:22,23:22:792:23:828:-61.2978,0,-58.0593	0/0:208:207,0:207:7423:0:0:0,-62.3132,-667.753	0/1:183:106,77:106:3764:77:2753:-192.922,0,-283.871	0/0:321:321,0:321:11488:0:0:0,-96.6306,-1033.8	0/0:112:112,0:112:3999:0:0:0,-33.7154,-360.1	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:176:174,0:174:6228:0:0:0,-52.3792,-560.256	0/0:288:288,0:288:10277:0:0:0,-86.6966,-924.859	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/1:148:85,63:85:3027:63:2245:-157.331,0,-228.109	0/0:71:71,0:71:2530:0:0:0,-21.3731,-227.951	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.711	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/1:59:26,33:26:936:33:1188:-89.4678,0,-66.7987	0/1:74:37,37:37:1320:37:1328:-97.546,0,-96.8257	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:57:33,24:33:1188:24:864:-60.9239,0,-90.0699	0/0:396:396,0:396:14162:0:0:0,-119.208,-1274.34	0/0:281:281,0:281:10067:0:0:0,-84.5894,-905.963	0/0:178:178,0:178:6366:0:0:0,-53.5833,-573.029	0/0:93:93,0:93:3323:0:0:0,-27.9958,-299.288	0/1:195:108,87:108:3867:87:3132:-223.404,0,-289.524	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/1:430:239,191:239:8559:191:6811:-483.614,0,-640.864	0/0:306:306,0:306:10906:0:0:0,-92.1152,-981.44	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	0/0:448:448,0:448:15962:0:0:0,-134.861,-1436.27	0/0:145:143,2:143:5112:2:57:0,-38.236,-454.808	0/0:100:100,0:100:3567:0:0:0,-30.103,-321.238	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:187:185,1:185:6636:1:36:0,-52.7531,-593.716	0/0:277:274,3:274:9840:3:100:0,-74.0549,-876.209	0/1:87:48,39:48:1724:39:1404:-100.47,0,-129.256	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:194:115,79:115:4100:79:2821:-195.728,0,-310.785	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:196:98,98:98:3511:98:3512:-257.288,0,-257.197	0/1:95:48,47:48:1706:47:1688:-123.609,0,-125.227	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.459	0/0:164:164,0:164:5859:0:0:0,-49.3689,-527.421	0/0:207:206,1:206:7384:1:36:0,-58.7149,-661.008	0/0:235:234,0:234:8400:0:0:0,-70.441,-755.641	0/0:176:176,0:176:6283:0:0:0,-52.9813,-565.565	0/1:198:105,93:105:3756:93:3336:-240.853,0,-278.209	0/0:267:267,0:267:9555:0:0:0,-80.375,-859.906	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:180:103,77:103:3675:77:2738:-192.474,0,-276.768	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/1:208:119,89:119:4232:89:3192:-224.889,0,-318.446	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:16:5,11:5:176:11:392:-30.8036,0,-11.3685	0/1:29:16,13:16:568:13:464:-33.3676,0,-42.722	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:110:108,2:108:3875:2:68:0,-26.6556,-342.486	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:237:236,1:236:8423:1:36:0,-67.7458,-754.476	0/0:299:297,2:297:10644:2:72:0,-83.1712,-950.255	0/0:93:93,0:93:3323:0:0:0,-27.9958,-299.288	0/0:143:143,0:143:5101:0:0:0,-43.0473,-459.234	0/0:205:202,3:202:7234:3:108:0,-51.636,-641.025	0/1:127:48,79:48:1724:79:2825:-216.256,0,-117.215	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:128:57,71:57:2032:71:2552:-191.398,0,-144.621	0/0:73:72,1:72:2588:1:36:0,-18.3769,-229.57	0/0:183:183,0:183:6539:0:0:0,-55.0885,-588.594	0/0:291:291,0:291:10409:0:0:0,-87.5997,-936.729	0/1:86:52,34:52:1859:34:1224:-84.5785,0,-141.7	0/0:157:155,2:155:5560:2:72:0,-40.425,-493.686	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	0/1:151:85,66:85:3043:66:2349:-166.212,0,-228.644	0/0:167:167,0:167:5952:0:0:0,-50.272,-535.788	0/0:341:340,1:340:12110:1:36:0,-99.0529,-1086.16	0/0:116:116,0:116:4133:0:0:0,-34.9195,-372.154	0/1:61:30,31:30:1060:31:1116:-82.3889,0,-77.3484	0/1:101:50,51:50:1800:51:1836:-135.117,0,-131.874	0/0:132:131,1:131:4699:1:36:0,-36.1377,-419.47	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.861	0/0:79:78,0:78:2782:0:0:0,-23.4803,-250.26	0/1:42:28,14:28:1008:14:504:-33.0548,0,-78.3931	0/1:70:43,27:43:1536:27:968:-66.3653,0,-117.461	0/1:68:20,48:20:712:48:1706:-133.356,0,-43.9366	0/0:199:199,0:199:7132:0:0:0,-59.905,-641.937	0/0:96:96,0:96:3418:0:0:0,-28.8989,-307.834
chr03	24185057	.	T	A	237696	PASS	AB=0.537833;ABP=44.0869;AC=157;AF=0.835106;AN=188;AO=10741;CIGAR=1X;DP=12289;DPB=12289;DPRA=0;EPP=23257.4;EPPR=3334.07;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9912;MQMR=59.9825;NS=94;NUMALT=1;ODDS=1.51275;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=383528;QR=55101;RO=1542;RPL=8;RPP=23257.4;RPPR=3334.07;RPR=10733;RUN=1;SAF=10741;SAP=23326.8;SAR=0;SRF=1542;SRP=3351.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:23,22:23:801:22:788:-57.6984,0,-58.8604	1/1:209:0,209:0:0:209:7461:-671.532,-62.9153,0	0/1:181:75,106:75:2680:106:3771:-285.102,0,-186.959	1/1:330:0,330:0:0:330:11765:-1058.71,-99.3399,0	1/1:113:0,113:0:0:113:4060:-365.586,-34.0164,0	1/1:52:0,52:0:0:52:1842:-166.056,-15.6536,0	1/1:179:0,179:0:0:179:6360:-572.488,-53.8844,0	1/1:290:0,290:0:0:290:10374:-933.578,-87.2987,0	1/1:100:0,100:0:0:100:3588:-323.126,-30.103,0	0/1:148:62,86:62:2220:86:3078:-232.695,0,-155.084	1/1:74:0,74:0:0:74:2637:-237.576,-22.2762,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:78:0,78:0:0:78:2789:-251.25,-23.4803,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:79:0,79:0:0:79:2817:-253.768,-23.7814,0	0/1:58:32,26:32:1152:26:936:-67.0997,0,-86.5304	0/1:72:36,36:36:1292:36:1296:-95.2698,0,-94.9096	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	0/1:55:23,32:23:824:32:1152:-87.4335,0,-57.9267	1/1:398:0,397:0:0:397:14181:-1275.69,-119.509,0	1/1:283:0,283:0:0:283:10081:-907.223,-85.1915,0	1/1:179:0,179:0:0:179:6391:-575.276,-53.8844,0	1/1:96:0,96:0:0:96:3379:-304.324,-28.8989,0	0/1:194:84,110:84:3000:110:3914:-294.052,0,-211.832	1/1:95:0,95:0:0:95:3389:-305.224,-28.5979,0	0/1:425:188,237:188:6752:237:8461:-633.553,0,-479.813	1/1:312:0,312:0:0:312:11076:-996.731,-93.9214,0	0/1:32:16,16:16:572:16:576:-42.542,0,-42.1805	1/1:451:0,451:0:0:451:16106:-1449.22,-135.765,0	1/1:146:1,145:1:36:145:5193:-463.909,-40.3521,0	1/1:100:0,100:0:0:100:3592:-323.486,-30.103,0	0/1:12:5,7:5:180:7:237:-18.0467,0,-12.9397	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:190:1,189:1:32:189:6775:-606.619,-53.9964,0	1/1:281:3,278:3:104:278:9928:-883.753,-74.8866,0	0/1:87:40,47:40:1432:47:1673:-124.666,0,-102.988	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:192:78,114:78:2785:114:4058:-307.608,0,-193.091	1/1:58:0,57:0:0:57:2033:-182.881,-17.1587,0	0/1:195:96,99:96:3432:99:3545:-260.556,0,-250.393	0/1:96:47,49:47:1692:49:1745:-128.433,0,-123.668	1/1:58:0,58:0:0:58:2065:-186.114,-17.4597,0	1/1:164:0,164:0:0:164:5803:-522.383,-49.3689,0	1/1:209:0,209:0:0:209:7469:-672.251,-62.9153,0	1/1:237:0,237:0:0:237:8508:-765.716,-71.3441,0	1/1:178:0,177:0:0:177:6330:-569.578,-53.2823,0	0/1:197:92,105:92:3291:105:3723:-275.538,0,-237.106	1/1:271:0,271:0:0:271:9674:-870.607,-81.5791,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:179:78,101:78:2796:101:3620:-272.121,0,-197.996	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:18:5,13:5:180:13:453:-35.6811,0,-11.1335	0/1:206:89,117:89:3159:117:4183:-314.638,0,-222.524	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	0/1:17:12,5:12:424:5:180:-11.4346,0,-33.3789	0/1:29:13,16:13:438:16:572:-43.0836,0,-31.0097	1/1:93:0,93:0:0:93:3340:-300.816,-27.9958,0	1/1:111:2,108:2:68:108:3884:-343.288,-27.0088,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:242:0,242:0:0:242:8577:-771.928,-72.8493,0	1/1:303:2,301:2:72:301:10798:-964.881,-84.3754,0	1/1:94:0,94:0:0:94:3350:-301.714,-28.2968,0	1/1:145:0,145:0:0:145:5177:-466.07,-43.6494,0	1/1:204:3,201:3:108:201:7166:-634.912,-51.335,0	0/1:129:79,50:79:2820:50:1792:-122.73,0,-215.207	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:122:0,122:0:0:122:4374:-393.833,-36.7257,0	1/1:82:0,82:0:0:82:2933:-264.203,-24.6845,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:126:71,55:71:2527:55:1942:-137.123,0,-189.752	1/1:74:1,73:1:36:73:2586:-229.388,-18.6779,0	1/1:186:0,186:0:0:186:6632:-596.958,-55.9916,0	1/1:294:0,294:0:0:294:10517:-946.441,-88.5028,0	0/1:85:32,53:32:1144:53:1896:-145.331,0,-77.682	1/1:157:1,155:1:36:155:5549:-495.934,-43.7222,0	0/1:17:9,7:9:324:7:252:-17.8527,0,-24.3295	0/1:151:63,88:63:2228:88:3134:-236.828,0,-155.327	1/1:169:0,169:0:0:169:6017:-541.633,-50.8741,0	1/1:348:1,347:1:36:347:12357:-1108.37,-101.16,0	1/1:115:0,115:0:0:115:4126:-371.523,-34.6185,0	0/1:63:31,32:31:1116:32:1137:-83.6721,0,-81.7868	0/1:99:49,50:49:1756:50:1800:-132.476,0,-128.522	1/1:135:1,134:1:36:134:4781:-426.846,-37.0408,0	1/1:52:0,52:0:0:52:1867:-168.309,-15.6536,0	1/1:89:0,89:0:0:89:3170:-285.522,-26.7917,0	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	0/1:44:15,29:15:540:29:1044:-81.0295,0,-35.6912	0/1:70:27,43:27:972:43:1540:-117.821,0,-66.7258	0/1:68:47,21:47:1684:21:756:-47.8972,0,-131.377	1/1:202:0,202:0:0:202:7185:-646.704,-60.8081,0	1/1:97:0,97:0:0:97:3477:-313.14,-29.1999,0
chr03	24185118	.	C	T	24615.2	PASS	AB=0.51212;ABP=6.74755;AC=32;AF=0.170213;AN=188;AO=1519;CIGAR=1X;DP=10249;DPB=10249;DPRA=0.988221;EPP=3301.48;EPPR=18944.8;GTI=2;LEN=1;MEANALT=1.07895;MQM=53.5444;MQMR=59.9218;NS=94;NUMALT=1;ODDS=1.21328;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53407;QR=311697;RO=8723;RPL=0;RPP=3301.48;RPPR=18762.8;RPR=1519;RUN=1;SAF=0;SAP=3301.48;SAR=1519;SRF=21;SRP=18762.8;SRR=8702;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:24,23:24:845:23:824:-59.9083,0,-62.2187	0/0:156:156,0:156:5603:0:0:0,-46.9607,-504.097	0/1:103:43,60:43:1531:60:2137:-160.372,0,-107.076	0/0:270:270,0:270:9543:0:0:0,-81.2781,-858.828	0/0:72:72,0:72:2557:0:0:0,-21.6742,-230.379	0/0:95:95,0:95:3363:0:0:0,-28.5978,-302.882	0/0:192:190,1:190:6809:1:36:0,-54.2583,-609.276	0/0:167:167,0:167:5923:0:0:0,-50.272,-533.177	0/0:88:87,1:87:3117:1:36:0,-23.103,-277.323	0/1:110:56,54:56:2003:54:1917:-139.564,0,-147.43	0/0:76:76,0:76:2705:0:0:0,-22.8783,-243.687	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/0:86:86,0:86:3059:0:0:0,-25.8886,-275.269	0/0:68:68,0:68:2439:0:0:0,-20.47,-219.762	0/1:51:17,34:17:612:34:1204:-92.965,0,-40.0609	0/1:86:36,50:36:1296:50:1784:-134.196,0,-91.0472	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/1:63:33,30:33:1172:30:1046:-74.9612,0,-86.8144	0/0:277:277,0:277:9921:0:0:0,-83.3853,-892.823	0/0:141:141,0:141:5038:0:0:0,-42.4452,-453.563	0/0:139:139,0:139:4992:0:0:0,-41.8432,-449.426	0/0:98:97,0:97:3488:0:0:0,-29.1999,-313.764	0/1:173:98,75:98:3505:75:2651:-186.059,0,-263.433	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:317:147,170:147:5211:170:5929:-437.836,0,-373.475	0/0:184:184,0:184:6591:0:0:0,-55.3895,-593.256	0/1:50:29,21:29:1036:21:748:-52.3145,0,-78.5024	0/0:453:453,0:453:16113:0:0:0,-136.367,-1449.8	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.226	0/0:188:187,0:187:6713:0:0:0,-56.2926,-603.859	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:2,5:2:72:5:165:-13.0475,0,-4.72951	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:263:263,0:263:9386:0:0:0,-79.1709,-844.701	0/0:180:180,0:180:6421:0:0:0,-54.1854,-577.976	0/1:106:48,58:48:1728:58:2042:-151.379,0,-123.894	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:190:95,95:95:3407:95:3318:-240.758,0,-249.518	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/1:145:75,70:75:2685:70:2467:-177.406,0,-198.244	0/1:110:53,57:53:1891:57:2018:-148.56,0,-137.266	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.616	0/0:135:135,0:135:4813:0:0:0,-40.639,-433.317	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.466	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965	0/1:171:84,87:84:3020:87:3067:-224.24,0,-220.554	0/0:183:183,0:183:6538:0:0:0,-55.0885,-588.166	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:271:136,135:136:4888:135:4693:-338.95,0,-358.488	0/0:52:51,0:51:1802:0:0:0,-15.3525,-162.086	0/1:10:2,8:2:72:8:288:-23.1911,0,-3.82642	0/1:146:82,64:82:2943:64:2281:-160.874,0,-221.144	0/0:32:32,0:32:1125:0:0:0,-9.63296,-101.556	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/1:7:1,6:1:36:6:216:-17.6778,0,-1.49106	0/0:65:65,0:65:2325:0:0:0,-19.5669,-209.508	0/0:144:142,2:142:5071:2:68:0,-36.8941,-450.081	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:212:212,0:212:7567:0:0:0,-63.8184,-681.059	0/0:206:205,1:205:7339:1:36:0,-58.4165,-656.919	0/0:61:60,1:60:2133:1:36:0,-14.7798,-188.653	0/0:104:104,0:104:3731:0:0:0,-31.3071,-335.987	0/0:150:149,1:149:5329:1:36:0,-41.5877,-476.168	0/1:98:31,66:31:1116:66:2293:-176.64,0,-71.1838	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:95:94,0:94:3360:0:0:0,-28.2968,-302.257	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6684	0/1:93:57,36:57:2048:36:1296:-88.3263,0,-156.574	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.355	0/0:220:220,0:220:7851:0:0:0,-66.2266,-706.615	0/0:212:210,2:210:7517:2:72:0,-56.9889,-669.732	0/1:67:25,42:25:881:42:1451:-110.38,0,-59.4369	0/0:126:122,4:122:4375:4:144:0,-24.6496,-380.626	1/1:5:0,5:0:0:5:180:-16.4934,-1.50515,0	0/1:81:32,49:32:1148:49:1673:-125.718,0,-79.2464	0/0:110:110,0:110:3924:0:0:0,-33.1133,-353.351	0/0:145:145,0:145:5196:0:0:0,-43.6493,-467.77	0/0:129:129,0:129:4594:0:0:0,-38.8329,-413.619	0/1:67:38,29:38:1355:29:1044:-73.9424,0,-102.081	0/1:84:44,40:44:1584:40:1413:-101.957,0,-117.471	0/0:186:186,0:186:6656:0:0:0,-55.9916,-599.115	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:106:106,0:106:3788:0:0:0,-31.9092,-341.116	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.015	0/1:48:25,23:25:896:23:820:-59.4467,0,-66.5109	0/1:126:72,53:72:2565:53:1870:-129.962,0,-193.102	0/1:102:42,60:42:1508:60:2072:-155.816,0,-105.31	0/0:128:128,0:128:4562:0:0:0,-38.5318,-410.633	0/0:113:113,0:113:4035:0:0:0,-34.0164,-363.321
chr03	24185149	.	T	A	26239.7	PASS	AB=0.521045;ABP=14.3438;AC=32;AF=0.170213;AN=188;AO=1552;CIGAR=1X;DP=10223;DPB=10223;DPRA=0.984286;EPP=3373.14;EPPR=18821;GTI=3;LEN=1;MEANALT=1.05556;MQM=53.5541;MQMR=59.9223;NS=94;NUMALT=1;ODDS=0.307771;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55556;QR=308474;RO=8666;RPL=1552;RPP=3373.14;RPPR=18821;RPR=0;RUN=1;SAF=0;SAP=3373.14;SAR=1552;SRF=0;SRP=18821;SRR=8666;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:25,25:25:884:25:900:-65.8219,0,-64.8269	0/0:155:155,0:155:5497:0:0:0,-46.6596,-494.559	0/1:105:43,62:43:1525:62:2224:-167.385,0,-105.933	0/0:269:269,0:269:9576:0:0:0,-80.9771,-861.795	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:91:91,0:91:3200:0:0:0,-27.3937,-288.218	0/0:192:192,0:192:6880:0:0:0,-57.7978,-619.265	0/0:165:165,0:165:5869:0:0:0,-49.6699,-528.302	0/0:83:82,1:82:2924:1:36:0,-21.5979,-260	0/1:112:55,57:55:1976:57:2044:-150.378,0,-144.399	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.314	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/0:90:89,0:89:3153:0:0:0,-26.7917,-283.636	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.372	0/1:53:17,36:17:612:36:1292:-100.18,0,-39.4588	0/1:87:36,51:36:1265:51:1819:-137.027,0,-87.9528	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:61:31,30:31:1108:30:1076:-78.2544,0,-81.6682	0/0:278:278,0:278:9896:0:0:0,-83.6863,-890.582	0/0:143:143,0:143:5064:0:0:0,-43.0473,-455.904	0/0:140:140,0:140:4990:0:0:0,-42.1442,-449.247	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/1:169:98,71:98:3496:71:2539:-177.288,0,-263.831	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:319:143,175:143:5068:175:6261:-466.893,0,-360.176	0/0:187:187,0:187:6648:0:0:0,-56.2926,-598.383	0/1:48:27,21:27:960:21:756:-53.5663,0,-72.2668	0/0:440:440,0:440:15663:0:0:0,-132.453,-1409.32	0/0:132:132,0:132:4687:0:0:0,-39.736,-421.976	0/0:191:191,0:191:6783:0:0:0,-57.4967,-610.525	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:2,5:2:72:5:176:-14.0572,0,-4.72951	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:256:256,0:256:9161:0:0:0,-77.0637,-824.461	0/0:176:176,0:176:6232:0:0:0,-52.9813,-560.201	0/1:103:46,57:46:1636:57:2052:-153.112,0,-116.52	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:197:97,100:97:3419:100:3530:-257.536,0,-248.49	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.453	0/1:147:75,72:75:2665:72:2585:-187.534,0,-195.843	0/1:114:51,63:51:1820:63:2264:-169.468,0,-129.673	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.438	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.818	0/0:132:131,0:131:4680:0:0:0,-39.4349,-420.994	0/0:98:98,0:98:3482:0:0:0,-29.5009,-313.589	0/0:108:108,0:108:3849:0:0:0,-32.5112,-346.606	0/1:177:87,90:87:3116:90:3215:-235.709,0,-227.383	0/0:183:183,0:183:6533:0:0:0,-55.0885,-587.878	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:267:132,135:132:4652:135:4852:-354.243,0,-338.465	0/0:53:53,0:53:1866:0:0:0,-15.9546,-168.149	0/1:10:2,8:2:72:8:288:-23.1911,0,-3.82642	0/1:147:83,64:83:2946:64:2288:-161.353,0,-221.112	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/1:7:1,6:1:36:6:216:-17.6778,0,-1.49106	0/0:64:64,0:64:2268:0:0:0,-19.2659,-204.383	0/0:142:140,2:140:5020:2:72:0,-35.9145,-445.114	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:214:214,0:214:7565:0:0:0,-64.4204,-680.89	0/0:208:207,1:207:7405:1:36:0,-59.0186,-662.666	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.638	0/0:103:103,0:103:3669:0:0:0,-31.0061,-330.411	0/0:152:151,1:151:5348:1:32:0,-42.5701,-478.247	0/1:99:33,66:33:1169:66:2360:-182.423,0,-75.7051	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/0:94:94,0:94:3295:0:0:0,-28.2968,-296.766	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2424	0/1:95:56,39:56:1989:39:1392:-96.3417,0,-150.665	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.046	0/0:223:223,0:223:7953:0:0:0,-67.1297,-715.788	0/0:213:211,2:211:7503:2:72:0,-57.29,-668.476	0/1:69:26,43:26:924:43:1540:-117.751,0,-62.6984	0/0:127:123,4:123:4388:4:144:0,-24.9507,-381.799	1/1:5:0,5:0:0:5:180:-16.4934,-1.50515,0	0/1:76:27,49:27:968:49:1737:-132.391,0,-64.5591	0/0:106:106,0:106:3776:0:0:0,-31.9092,-340.038	0/0:145:145,0:145:5181:0:0:0,-43.6493,-466.42	0/0:128:128,0:128:4550:0:0:0,-38.5318,-409.657	0/1:68:39,28:39:1404:28:1008:-70.3467,0,-106.131	0/1:83:43,40:43:1536:40:1440:-104.79,0,-113.453	0/0:182:181,0:181:6446:0:0:0,-54.4864,-579.864	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	0/0:104:104,0:104:3696:0:0:0,-31.3071,-332.845	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.126	0/1:49:25,24:25:900:24:864:-63.0935,0,-66.5705	0/1:125:72,53:72:2545:53:1904:-133.195,0,-191.664	0/1:102:37,65:37:1312:65:2326:-178.569,0,-87.6766	0/0:126:126,0:126:4478:0:0:0,-37.9298,-402.957	0/0:112:112,0:112:3992:0:0:0,-33.7154,-359.454
chr03	24219124	.	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chr03	24235651	.	C	T	37895.5	PASS	AB=0.571084;ABP=130.51;AC=27;AF=0.143617;AN=188;AO=1693;CIGAR=1X;DP=10415;DPB=10415;DPRA=0.978241;EPP=3679.31;EPPR=18920.9;GTI=1;LEN=1;MEANALT=1;MQM=48.938;MQMR=59.9808;NS=94;NUMALT=1;ODDS=1.80254;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60689;QR=309854;RO=8716;RPL=987;RPP=104.287;RPPR=264.249;RPR=706;RUN=1;SAF=987;SAP=104.287;SAR=706;SRF=4871;SRP=265.27;SRR=3845;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:20,7:20:705:7:252:-13.7832,0,-55.6368	0/0:50:50,0:50:1742:0:0:0,-15.0515,-157.06	0/1:38:26,12:26:908:12:432:-24.3813,0,-70.5934	0/0:186:186,0:186:6635:0:0:0,-55.9916,-597.231	0/0:95:95,0:95:3387:0:0:0,-28.5978,-305.046	0/0:53:51,2:51:1824:2:72:0,-9.11787,-157.604	0/0:93:93,0:93:3296:0:0:0,-27.9958,-296.859	0/0:115:114,0:114:4072:0:0:0,-34.3174,-366.294	0/0:48:45,0:45:1587:0:0:0,-13.5463,-142.567	0/1:130:31,99:31:1100:99:3556:-276.209,0,-60.1764	0/0:165:165,0:165:5859:0:0:0,-49.6699,-527.421	0/0:60:60,0:60:2114:0:0:0,-18.0618,-190.528	0/0:83:83,0:83:2920:0:0:0,-24.9855,-263.033	0/0:123:123,0:123:4310:0:0:0,-37.0267,-388.075	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:103:35,68:35:1247:68:2432:-184.325,0,-81.528	0/1:105:49,56:49:1756:56:2016:-139.584,0,-126.716	0/0:78:76,2:76:2707:2:72:0,-16.9755,-237.369	0/1:41:14,27:14:483:27:960:-69.3395,0,-31.4551	0/0:165:165,0:165:5869:0:0:0,-49.6699,-528.321	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.606	0/0:115:115,0:115:4096:0:0:0,-34.6184,-368.826	0/0:143:142,1:142:5021:1:36:0,-39.5263,-448.518	0/1:91:52,39:52:1864:39:1381:-94.0049,0,-140.646	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.372	0/1:199:89,110:89:3158:110:3944:-291.626,0,-223.764	0/0:219:219,0:219:7828:0:0:0,-65.9256,-704.548	0/1:78:27,51:27:946:51:1832:-137.424,0,-61.9725	0/0:231:231,0:231:8231:0:0:0,-69.5379,-740.807	0/0:101:96,5:96:3400:5:180:0,-15.3902,-291.197	0/0:124:124,0:124:4433:0:0:0,-37.3277,-399.14	0/0:158:156,2:156:5574:2:68:0,-41.1533,-495.374	0/0:205:197,8:197:7014:8:288:0,-35.4437,-605.059	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:280:280,0:280:9944:0:0:0,-84.2884,-894.904	0/0:128:128,0:128:4542:0:0:0,-38.5318,-408.95	0/1:71:34,37:34:1216:37:1328:-91.8581,0,-88.3734	0/0:362:362,0:362:12894:0:0:0,-108.973,-1160.28	0/1:201:109,92:109:3862:92:3300:-228.862,0,-287.263	0/0:64:63,1:63:2224:1:36:0,-15.6676,-196.824	0/1:108:88,20:88:3121:20:716:-32.1337,0,-248.606	0/1:125:45,80:45:1604:80:2872:-215.717,0,-107.021	0/0:94:94,0:94:3336:0:0:0,-28.2968,-300.457	0/0:86:86,0:86:3059:0:0:0,-25.8886,-275.54	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:190:189,1:189:6768:1:36:0,-53.6747,-605.672	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/1:168:40,128:40:1432:128:4596:-355.78,0,-78.6046	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.621	0/0:197:196,1:196:6992:1:36:0,-55.7046,-625.746	0/1:51:22,29:22:788:29:1044:-73.8015,0,-55.8923	0/0:65:65,0:65:2290:0:0:0,-19.5669,-206.359	0/1:15:2,13:2:72:13:468:-34.4761,0,-2.32127	0/1:168:55,113:55:1951:113:4042:-307.152,0,-125.292	0/0:71:69,2:69:2455:2:72:0,-14.5364,-214.368	0/0:104:101,3:101:3616:3:108:0,-21.2319,-315.571	0/0:53:49,4:49:1747:4:144:0,-2.77906,-144.338	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.496	0/0:163:163,0:163:5760:0:0:0,-49.0679,-518.517	0/0:264:264,0:264:9389:0:0:0,-79.4719,-844.978	0/0:104:104,0:104:3692:0:0:0,-31.3071,-332.483	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:57:57,0:57:2023:0:0:0,-17.1587,-182.342	0/0:168:168,0:168:6013:0:0:0,-50.573,-541.271	0/1:181:34,147:34:1209:147:5247:-416.509,0,-54.6277	0/0:142:142,0:142:5071:0:0:0,-42.7463,-456.535	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.6947	0/0:116:116,0:116:4100:0:0:0,-34.9195,-369.164	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/1:32:12,20:12:432:20:712:-51.7866,0,-29.5882	0/0:43:42,0:42:1478:0:0:0,-12.6433,-132.953	0/0:177:177,0:177:6271:0:0:0,-53.2823,-564.484	0/0:103:103,0:103:3683:0:0:0,-31.0061,-331.673	0/1:61:53,8:53:1841:8:288:-6.62946,0,-147.6	0/0:54:52,2:52:1820:2:72:0,-9.75078,-157.574	0/1:4:3,1:3:108:1:36:-1.91952,0,-8.87105	0/1:154:63,91:63:2228:91:3272:-241.057,0,-154.424	0/0:34:34,0:34:1183:0:0:0,-10.235,-106.771	0/0:165:164,0:164:5815:0:0:0,-49.3689,-523.107	0/0:123:123,0:123:4360:0:0:0,-37.0267,-392.568	0/1:145:62,83:62:2201:83:2980:-221.689,0,-154.704	0/1:146:55,91:55:1937:91:3268:-243.643,0,-130.654	0/0:183:183,0:183:6529:0:0:0,-55.0885,-587.694	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:89:89,0:89:3119:0:0:0,-26.7917,-280.93	0/0:85:85,0:85:3027:0:0:0,-25.5875,-272.661	0/1:126:85,41:85:3024:41:1476:-91.7394,0,-234.46	0/1:195:115,80:115:4063:80:2864:-193.667,0,-307.158	0/1:142:26,116:26:932:116:4155:-326.611,0,-41.4526	0/0:55:55,0:55:1939:0:0:0,-16.5566,-174.786	0/0:133:133,0:133:4712:0:0:0,-40.037,-424.239
chr03	24235657	.	AGTAGTCG	GGTAGTCG,GGTAG	383553	PASS	AB=0.482159,0.512351;ABP=12.0757,7.35523;AC=163,25;AF=0.867021,0.132979;AN=188;AO=12239,1721;CIGAR=1X7M,1X3M3D1M;DP=14049;DPB=13402.2;DPRA=0,0.78409;EPP=26562.3,3740.11;EPPR=13.8677;GTI=1;LEN=1,5;MEANALT=2.19149,2.65789;MQM=59.9883,48.9553;MQMR=60;NS=94;NUMALT=2;ODDS=3.0297;PAIRED=0,0;PAIREDR=0;PAO=6.5,0.5;PQA=208,18;PQR=0;PRO=0;QA=429769,60138;QR=150;RO=5;RPL=4808,1001;RPP=1223.7,102.639;RPPR=6.91895;RPR=7431,720;RUN=1,1;SAF=4808,1001;SAP=1223.7,102.639;SAR=7431,720;SRF=4;SRP=6.91895;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:0,47,7:0:0:47,7:1624,250:-151.631,-19.6775,-5.52907,-132.294,0,-130.187	1/1:107:0,107,0:0:0:107,0:3786,0:-340.939,-32.2102,0,-340.939,-32.2102,-340.939	1/2:87:0,74,12:0:0:74,12:2593,422:-242.451,-31.438,-9.1618,-211.021,0,-207.408	1/1:189:0,187,0:0:0:187,0:6563,0:-590.453,-56.2926,0,-590.453,-56.2926,-590.453	1/1:98:0,98,0:0:0:98,0:3437,0:-309.545,-29.5009,0,-309.545,-29.5009,-309.545	1/1:71:0,71,0:0:0:71,0:2484,0:-223.813,-21.3731,0,-223.813,-21.3731,-223.813	1/1:91:0,91,0:0:0:91,0:3196,0:-287.593,-27.3937,0,-287.593,-27.3937,-287.593	1/1:190:1,186,0:1:33:186,0:6563,0:-587.444,-53.3275,0,-587.745,-55.9916,-590.413	1/1:99:0,97,0:0:0:97,0:3397,0:-305.417,-29.1999,0,-305.417,-29.1999,-305.417	1/2:140:0,38,102:0:0:38,102:1333,3571:-394.193,-285.714,-274.274,-108.828,0,-78.123	1/1:191:0,190,0:0:0:190,0:6709,0:-603.531,-57.1957,0,-603.531,-57.1957,-603.531	1/1:88:1,87,0:1:21:87,0:3036,0:-271.37,-24.3907,0,-271.672,-26.1896,-273.259	1/1:102:0,102,0:0:0:102,0:3585,0:-322.858,-30.7051,0,-322.858,-30.7051,-322.858	1/1:132:0,132,0:0:0:132,0:4639,0:-417.676,-39.736,0,-417.676,-39.736,-417.676	1/1:131:0,129,0:0:0:129,0:4514,0:-406.073,-38.8329,0,-406.073,-38.8329,-406.073	1/2:116:0,46,69:0:0:46,69:1589,2383:-319.391,-190.289,-176.441,-129.087,0,-108.316	1/2:110:0,54,56:0:0:54,56:1914,1964:-306.638,-150.701,-134.446,-156.28,0,-139.423	1/1:89:0,87,2:0:0:87,2:3044,71:-273.851,-26.1896,0,-268.353,-20.3525,-267.751	1/2:60:0,33,27:0:0:33,27:1156,927:-165.165,-71.0883,-61.1543,-94.4124,0,-86.2846	1/1:167:1,165,0:1:30:165,0:5770,0:-516.416,-47.2764,0,-516.717,-49.67,-519.115	1/1:141:0,139,0:0:0:139,0:4891,0:-439.999,-41.8432,0,-439.999,-41.8432,-439.999	1/1:123:0,122,0:0:0:122,0:4290,0:-385.938,-36.7257,0,-385.938,-36.7257,-385.938	1/1:145:0,143,1:0:0:143,1:5060,36:-455.192,-43.0473,0,-452.324,-40.1833,-452.023	1/2:90:0,51,39:0:0:51,39:1800,1375:-255.993,-109.414,-94.0614,-146.927,0,-135.187	1/1:125:0,125,0:0:0:125,0:4409,0:-396.624,-37.6288,0,-396.624,-37.6288,-396.624	1/2:202:0,88,111:0:0:88,111:3109,3878:-565.628,-312.43,-285.939,-253.253,0,-219.838	1/1:227:1,224,0:1:33:224,0:7886,0:-706.497,-64.7525,0,-706.798,-67.4307,-709.466	1/2:87:0,36,50:0:0:36,50:1272,1739:-241.554,-137.956,-127.119,-103.598,0,-88.5461	1/1:235:0,235,0:0:0:235,0:8301,0:-747.107,-70.7421,0,-747.107,-70.7421,-747.107	1/1:108:0,103,5:0:0:103,5:3566,178:-320.825,-31.0061,0,-307.73,-17.586,-306.225	1/1:123:0,123,0:0:0:123,0:4304,0:-387.536,-37.0267,0,-387.536,-37.0267,-387.536	1/1:170:0,166,2:0:0:166,2:5844,66:-525.735,-49.971,0,-520.429,-44.6802,-519.826	1/1:210:0,200,8:0:0:200,8:7034,288:-632.783,-60.206,0,-609.283,-36.6547,-606.875	1/1:336:0,333,0:0:0:333,0:11630,0:-1046.23,-100.243,0,-1046.23,-100.243,-1046.23	1/1:514:0,512,0:0:0:512,0:17985,0:-1617.95,-154.127,0,-1617.95,-154.127,-1617.95	1/1:858:0,853,0:0:0:853,0:29967,0:-2695.86,-256.779,0,-2695.86,-256.779,-2695.86	1/1:409:0,405,0:0:0:405,0:14286,0:-1285.16,-121.917,0,-1285.16,-121.917,-1285.16	1/1:126:0,126,0:0:0:126,0:4412,0:-397.255,-37.9298,0,-397.255,-37.9298,-397.255	1/2:96:0,58,38:0:0:58,38:2015,1311:-264.985,-101.162,-83.7025,-164.158,0,-152.719	1/1:377:0,375,0:0:0:375,0:13187,0:-1186.29,-112.886,0,-1186.29,-112.886,-1186.29	1/2:203:0,109,93:0:0:109,93:3852,3268:-572.579,-258.863,-226.051,-313.734,0,-285.739	1/1:91:0,91,0:0:0:91,0:3200,0:-288.225,-27.3937,0,-288.225,-27.3937,-288.225	1/2:112:0,90,21:0:0:90,21:3181,741:-319.404,-60.3302,-33.2375,-259.181,0,-252.86	1/2:153:0,69,83:0:0:69,83:2422,2902:-429.071,-231.952,-211.181,-197.202,0,-172.217	1/1:124:0,124,0:0:0:124,0:4327,0:-389.61,-37.3277,0,-389.61,-37.3277,-389.61	1/1:87:0,86,0:0:0:86,0:2996,0:-269.51,-25.8886,0,-269.51,-25.8886,-269.51	1/1:139:0,133,0:0:0:133,0:4750,0:-427.308,-40.037,0,-427.308,-40.037,-427.308	1/1:190:0,187,1:0:0:187,1:6590,36:-592.854,-56.2926,0,-589.986,-53.414,-589.685	1/1:96:0,96,0:0:0:96,0:3370,0:-303.515,-28.8989,0,-303.515,-28.8989,-303.515	1/2:171:0,38,132:0:0:38,132:1325,4667:-480.509,-372.749,-361.31,-107.826,0,-68.0905	1/1:108:0,107,0:0:0:107,0:3734,0:-335.904,-32.2102,0,-335.904,-32.2102,-335.904	1/1:198:0,197,1:0:0:197,1:6888,36:-619.64,-59.3029,0,-616.702,-56.0057,-616.401	1/2:99:0,69,30:0:0:69,30:2452,1050:-280.954,-81.1293,-60.3582,-200.164,0,-191.134	1/1:66:0,65,0:0:0:65,0:2316,0:-208.341,-19.567,0,-208.341,-19.567,-208.341	1/2:70:0,57,13:0:0:57,13:2012,462:-198.508,-34.647,-17.4883,-164.192,0,-160.279	1/2:172:0,60,112:0:0:60,112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chr03	24235987	.	C	T	12049.1	PASS	AB=0.509142;ABP=4.04259;AC=31;AF=0.166667;AN=186;AO=731;CIGAR=1X;DP=4718;DPB=4718;DPRA=1.00867;EPP=1573.03;EPPR=8522.19;GTI=2;LEN=1;MEANALT=1.05556;MQM=59.9179;MQMR=59.9814;NS=93;NUMALT=1;ODDS=0.593968;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25980;QR=138800;RO=3983;RPL=730;RPP=1581.68;RPPR=8530.81;RPR=1;RUN=1;SAF=730;SAP=1581.68;SAR=1;SRF=3982;SRP=8643.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:12,12:12:420:12:432:-31.9965,0,-30.9093	0/0:41:41,0:41:1412:0:0:0,-12.3422,-127.285	0/1:121:58,63:58:1998:63:2258:-167.058,0,-143.666	0/0:185:184,1:184:6381:1:36:0,-52.0923,-570.796	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:14:14,0:14:483:0:0:0,-4.21442,-43.7973	0/0:74:74,0:74:2587:0:0:0,-22.2762,-233.076	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.275	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.371	0/1:59:30,29:30:1051:29:1027:-74.9814,0,-77.1389	0/0:28:28,0:28:971:0:0:0,-8.42884,-87.6983	0/0:43:43,0:43:1495:0:0:0,-12.9443,-134.84	0/0:62:62,0:62:2127:0:0:0,-18.6639,-191.697	0/0:26:26,0:26:892:0:0:0,-7.82678,-80.5899	0/0:55:55,0:55:1907:0:0:0,-16.5566,-171.905	0/1:35:10,25:10:339:25:888:-69.703,0,-20.3015	0/1:28:11,16:11:359:16:559:-42.2532,0,-24.2402	0/0:24:24,0:24:833:0:0:0,-7.22472,-75.2849	0/1:20:9,11:9:320:11:387:-29.1453,0,-23.1218	0/0:120:119,0:119:4174:0:0:0,-35.8226,-375.488	0/0:85:84,0:84:2899:0:0:0,-25.2865,-260.887	0/0:38:38,0:38:1298:0:0:0,-11.4391,-117.114	0/0:52:52,0:52:1831:0:0:0,-15.6536,-165.07	0/1:26:23,3:23:802:3:108:-2.24839,0,-64.6706	0/0:27:27,0:27:933:0:0:0,-8.12781,-84.2804	0/1:125:66,59:66:2252:59:2099:-151.549,0,-165.31	0/0:143:143,0:143:5052:0:0:0,-43.0473,-454.831	0/1:17:10,7:10:334:7:239:-16.7252,0,-25.2654	0/0:123:123,0:123:4340:0:0:0,-37.0267,-390.78	0/0:62:61,1:61:2139:1:36:0,-15.0656,-189.177	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.575	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:17:9,8:9:320:8:284:-20.7858,0,-24.0248	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:33:33,0:33:1159:0:0:0,-9.93399,-104.616	0/0:94:94,0:94:3166:0:0:0,-28.2968,-285.169	0/0:57:57,0:57:1972:0:0:0,-17.1587,-177.75	0/1:27:11,16:11:373:16:568:-43.3241,0,-25.7674	.:.:.:.:.:.:.:.	0/1:64:37,27:37:1299:27:940:-65.6449,0,-97.9445	0/0:35:35,0:35:1212:0:0:0,-10.536,-109.38	0/1:64:27,37:27:956:37:1310:-98.9316,0,-67.0898	0/1:33:16,17:16:560:17:599:-44.3033,0,-40.7948	0/0:27:27,0:27:880:0:0:0,-8.12781,-79.4971	0/0:48:48,0:48:1667:0:0:0,-14.4494,-150.313	0/0:55:55,0:55:1940:0:0:0,-16.5566,-174.877	0/0:82:82,0:82:2852:0:0:0,-24.6845,-256.918	0/0:55:55,0:55:1929:0:0:0,-16.5566,-173.885	0/1:61:33,28:33:1180:28:1008:-72.6735,0,-88.1452	0/0:86:86,0:86:3027:0:0:0,-25.8886,-272.661	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:86:54,32:54:1863:32:1120:-75.218,0,-142.053	0/0:39:39,0:39:1370:0:0:0,-11.7402,-123.597	0/1:8:2,6:2:63:6:216:-17.3823,0,-3.57491	0/1:109:46,62:46:1614:62:2220:-167.341,0,-112.823	0/0:11:11,0:11:364:0:0:0,-3.31133,-33.0784	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/0:48:48,0:48:1697:0:0:0,-14.4494,-153.014	0/0:64:63,1:63:2194:1:36:0,-15.6676,-194.125	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:131:131,0:131:4618:0:0:0,-39.4349,-415.788	0/0:55:55,0:55:1908:0:0:0,-16.5566,-171.995	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.7422	0/0:51:51,0:51:1740:0:0:0,-15.3525,-156.876	0/0:44:41,3:41:1407:3:108:0,-3.17015,-116.844	0/1:68:18,50:18:635:50:1796:-141.452,0,-37.0069	0/0:43:43,0:43:1506:0:0:0,-12.9443,-135.832	0/0:35:35,0:35:1221:0:0:0,-10.536,-110.188	0/0:37:37,0:37:1293:0:0:0,-11.1381,-116.669	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/1:78:37,41:37:1262:41:1449:-107.224,0,-90.3928	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.95	0/0:57:57,0:57:1999:0:0:0,-17.1587,-180.179	0/0:138:138,0:138:4879:0:0:0,-41.5421,-439.266	0/1:41:24,17:24:838:17:612:-43.0012,0,-63.3941	0/0:59:58,1:58:2020:1:36:0,-14.1625,-178.473	0/1:10:8,2:8:288:2:63:-2.97285,0,-23.2571	0/1:73:35,38:35:1220:38:1364:-101.086,0,-88.1255	0/0:71:71,0:71:2468:0:0:0,-21.3731,-222.372	0/0:91:91,0:91:3136:0:0:0,-27.3937,-282.465	0/0:27:27,0:27:948:0:0:0,-8.12781,-85.6346	0/1:51:32,19:32:1099:19:664:-44.7285,0,-83.86	0/1:27:18,9:18:619:9:320:-21.0145,0,-47.904	0/0:60:60,0:60:2114:0:0:0,-18.0618,-190.528	0/0:17:17,0:17:591:0:0:0,-5.11751,-53.5153	0/0:39:39,0:39:1338:0:0:0,-11.7402,-120.714	0/0:48:48,0:48:1651:0:0:0,-14.4494,-148.871	0/1:27:12,15:12:428:15:536:-40.447,0,-30.731	0/1:61:26,35:26:915:35:1222:-91.9011,0,-64.3027	0/1:39:11,28:11:392:28:1008:-79.2962,0,-23.8799	0/0:50:50,0:50:1742:0:0:0,-15.0515,-157.063	0/0:61:61,0:61:2106:0:0:0,-18.3628,-189.804
chr03	24277115	.	T	G	10567.5	PASS	AB=0.438131;ABP=55.674;AC=31;AF=0.164894;AN=188;AO=700;CIGAR=1X;DP=5916;DPB=5916;DPRA=0.811203;EPP=1514.37;EPPR=11296.8;GTI=3;LEN=1;MEANALT=1.02857;MQM=59.3286;MQMR=59.9985;NS=94;NUMALT=1;ODDS=0.493469;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24878;QR=185843;RO=5209;RPL=1;RPP=1514.37;RPPR=11296.8;RPR=699;RUN=1;SAF=700;SAP=1523.04;SAR=0;SRF=5209;SRP=11314.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:27,31:27:952:31:1092:-81.1027,0,-68.5354	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/1:80:43,37:43:1517:37:1327:-95.6204,0,-112.739	0/0:111:111,0:111:3948:0:0:0,-33.4143,-355.512	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.902	0/0:104:104,0:104:3717:0:0:0,-31.3071,-334.73	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.86	0/1:36:25,11:25:896:11:392:-24.783,0,-70.1233	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.849	0/1:62:28,34:28:1008:34:1211:-90.5867,0,-72.3725	0/1:35:21,14:21:756:14:495:-34.347,0,-57.8312	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/1:35:21,14:21:748:14:504:-35.162,0,-57.1092	0/0:95:95,0:95:3387:0:0:0,-28.5978,-305.046	0/0:99:98,1:98:3485:1:36:0,-26.2037,-310.263	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:58:35,23:35:1251:23:828:-57.3844,0,-95.4345	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/1:134:82,52:82:2887:52:1830:-124.64,0,-219.726	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.03	0/1:20:13,7:13:468:7:239:-14.4366,0,-36.439	0/0:131:131,0:131:4670:0:0:0,-39.4349,-420.461	0/0:89:87,2:87:3101:2:68:0,-20.334,-272.859	0/0:85:85,0:85:3009:0:0:0,-25.5875,-271.042	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:22:16,6:16:572:6:216:-12.0452,0,-45.1908	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/0:128:128,0:128:4571:0:0:0,-38.5318,-411.556	0/0:94:94,0:94:3341:0:0:0,-28.2968,-300.907	0/1:48:23,25:23:824:25:900:-66.8716,0,-60.0339	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:63:33,30:33:1153:30:1055:-76.2951,0,-85.1093	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:93:59,34:59:2112:34:1192:-79.0594,0,-162.353	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	0/0:79:78,0:78:2788:0:0:0,-23.4803,-250.801	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:42:26,16:26:924:16:558:-37.8942,0,-70.8344	0/0:96:95,0:95:3381:0:0:0,-28.5978,-304.146	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:65:43,22:43:1540:22:792:-52.0387,0,-119.326	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:71:38,33:38:1345:33:1177:-84.4171,0,-99.975	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/1:13:6,7:6:208:7:248:-18.7508,0,-15.1457	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:90:88,0:88:3156:0:0:0,-26.4906,-283.905	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:85:85,0:85:3009:0:0:0,-25.5875,-271.042	0/0:121:120,1:120:4262:1:36:0,-32.8264,-380.155	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:121:121,0:121:4296:0:0:0,-36.4246,-386.821	0/1:88:39,49:39:1380:49:1716:-128.091,0,-98.0081	0/0:29:27,2:27:963:2:72:0,-1.89315,-80.1492	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:90:53,35:53:1904:35:1245:-85.5025,0,-144.787	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:221:221,0:221:7884:0:0:0,-66.5276,-709.588	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/1:66:27,39:27:956:39:1385:-105.05,0,-66.4878	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.564	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:58:35,23:35:1248:23:817:-56.391,0,-95.1651	0/0:59:59,0:59:2098:0:0:0,-17.7608,-189.088	0/0:105:105,0:105:3749:0:0:0,-31.6081,-337.609	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:60:32,28:32:1140:28:1004:-72.6141,0,-84.8474	0/1:35:22,13:22:792:13:464:-31.5568,0,-61.0696	0/0:120:119,0:119:4268:0:0:0,-35.8226,-383.938	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:77:77,0:77:2748:0:0:0,-23.1793,-247.563	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:43:23,20:23:828:20:720:-51.9716,0,-61.8998	0/1:94:53,41:53:1876:41:1463:-102.021,0,-140.822	0/1:49:24,25:24:855:25:896:-66.2099,0,-62.5197	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.036	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.191
chr03	24277134	.	T	A	8291.95	PASS	AB=0.407115;ABP=116.768;AC=31;AF=0.164894;AN=188;AO=624;CIGAR=1X;DP=5950;DPB=5950;DPRA=0.771415;EPP=1358.01;EPPR=11496.7;GTI=5;LEN=1;MEANALT=1.08571;MQM=59.3814;MQMR=59.9985;NS=94;NUMALT=1;ODDS=4.84366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21439;QR=190364;RO=5321;RPL=624;RPP=1358.01;RPPR=11496.7;RPR=0;RUN=1;SAF=624;SAP=1358.01;SAR=0;SRF=5321;SRP=11557.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:28,26:28:1004:26:897:-64.7672,0,-74.4202	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:81:45,36:45:1612:36:1276:-90.7587,0,-120.987	0/0:115:115,0:115:4123:0:0:0,-34.6184,-371.253	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/1:36:26,10:26:928:10:352:-21.1811,0,-73.0012	0/0:53:53,0:53:1874:0:0:0,-15.9546,-168.938	0/0:87:87,0:87:3067:0:0:0,-26.1896,-276.256	0/0:81:81,0:81:2885:0:0:0,-24.3834,-259.885	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:56:27,27:27:950:27:930:-67.3921,0,-69.1985	0/1:33:20,13:20:705:13:445:-30.4422,0,-53.8388	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:36:22,14:22:774:14:492:-33.7753,0,-59.1431	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:107:106,1:106:3760:1:36:0,-28.6119,-335.002	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/0:85:85,0:85:3047:0:0:0,-25.5875,-274.459	0/1:57:34,23:34:1224:23:794:-54.6178,0,-93.3083	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:125:83,42:83:2959:42:1445:-92.7136,0,-228.915	0/0:117:117,0:117:4174:0:0:0,-35.2205,-375.842	0/1:20:13,7:13:464:7:224:-13.9436,0,-36.0769	0/0:131:131,0:131:4688:0:0:0,-39.4349,-422.08	0/0:91:89,2:89:3196:2:72:0,-20.557,-281.026	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.868	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:19:15,4:15:532:4:134:-6.28975,0,-42.4935	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:129:129,0:129:4600:0:0:0,-38.8329,-414.164	0/0:96:94,0:94:3354:0:0:0,-28.2968,-301.716	0/1:45:22,23:22:792:23:772:-56.2425,0,-58.0593	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:60:34,26:34:1212:26:895:-62.8008,0,-91.3245	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:91:61,30:61:2184:30:1003:-63.1663,0,-169.432	0/1:35:20,15:20:716:15:523:-36.8624,0,-54.2317	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/0:83:83,0:83:2953:0:0:0,-24.9855,-266.003	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.832	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:40:27,13:27:972:13:460:-29.6074,0,-75.7567	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:62:42,20:42:1500:20:693:-44.0257,0,-116.631	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:6:4,2:4:144:2:64:-4.27251,0,-11.5074	0/1:67:40,27:40:1428:27:911:-62.1141,0,-108.649	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:13:6,7:6:201:7:233:-17.3818,0,-14.5037	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:124:123,1:123:4402:1:36:0,-33.7294,-392.748	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:120:120,0:120:4316:0:0:0,-36.1236,-388.614	0/1:79:39,40:39:1396:40:1377:-100.434,0,-102.158	0/0:28:26,2:26:932:2:72:0,-1.59212,-77.3621	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:86:54,31:54:1936:31:1060:-69.7573,0,-148.569	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/0:224:224,0:224:8012:0:0:0,-67.4307,-721.099	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:65:28,37:28:1004:37:1276:-95.5707,0,-71.1089	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	0/1:56:35,21:35:1247:21:732:-49.3437,0,-95.6764	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.735	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.514	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/1:57:31,26:31:1116:26:886:-62.8892,0,-83.593	0/1:35:22,13:22:784:13:448:-30.1083,0,-60.3479	0/0:121:121,0:121:4335:0:0:0,-36.4246,-390.324	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:75:75,0:75:2683:0:0:0,-22.5772,-241.714	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.786	0/1:39:23,16:23:828:16:546:-37.5281,0,-63.1039	0/1:94:55,39:55:1949:39:1332:-91.5332,0,-147.387	0/1:48:24,24:24:860:24:811:-58.8519,0,-63.2724	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.743	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.451
chr03	24309112	.	CTC	TTC,TTT	141171	PASS	AB=0.51638,0.481399;ABP=7.20735,8.4227;AC=154,30;AF=0.836957,0.163043;AN=184;AO=5580,879;CIGAR=1X2M,1X1M1X;DP=6481;DPB=6481;DPRA=0,1.00074;EPP=12076.4,1911.73;EPPR=11.6962;GTI=2;LEN=1,3;MEANALT=1.61957,2.15;MQM=59.3708,37.5984;MQMR=60;NS=92;NUMALT=2;ODDS=3.30975;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=199299,30939;QR=141;RO=4;RPL=5,0;RPP=12076.4,1911.73;RPPR=11.6962;RPR=5575,879;RUN=1,1;SAF=5580,879;SAP=12119.8,1911.73;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:21:0,15,6:0:0:15,6:531,214:-59.1954,-15.956,-11.4406,-43.5711,0,-41.7649	1/1:50:0,50,0:0:0:50,0:1784,0:-160.808,-15.0515,0,-160.808,-15.0515,-160.808	1/2:125:0,75,50:0:0:75,50:2659,1775:-343.411,-127.141,-104.563,-216.601,0,-201.549	1/1:124:0,124,0:0:0:124,0:4426,0:-398.444,-37.3277,0,-398.444,-37.3277,-398.444	1/1:37:0,36,0:0:0:36,0:1292,0:-116.248,-10.8371,0,-116.248,-10.8371,-116.248	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:52:0,52,0:0:0:52,0:1868,0:-168.381,-15.6536,0,-168.381,-15.6536,-168.381	1/1:69:0,69,0:0:0:69,0:2457,0:-221.12,-20.7711,0,-221.12,-20.7711,-221.12	1/1:48:0,47,0:0:0:47,0:1683,0:-151.455,-14.1484,0,-151.455,-14.1484,-151.455	1/2:25:0,15,10:0:0:15,10:540,352:-71.752,-27.6772,-23.1617,-44.4211,0,-41.4108	1/1:43:0,43,0:0:0:43,0:1544,0:-139.188,-12.9443,0,-139.188,-12.9443,-139.188	1/1:88:0,88,0:0:0:88,0:3136,0:-282.307,-26.4906,0,-282.307,-26.4906,-282.307	1/1:78:0,78,0:0:0:78,0:2789,0:-250.517,-23.4803,0,-250.517,-23.4803,-250.517	1/1:62:0,61,0:0:0:61,0:2188,0:-196.952,-18.3628,0,-196.952,-18.3628,-196.952	1/1:53:0,53,0:0:0:53,0:1904,0:-171.632,-15.9546,0,-171.632,-15.9546,-171.632	1/2:49:0,20,29:0:0:20,29:716,1014:-134.983,-76.6023,-70.5817,-58.7258,0,-49.9959	1/2:18:0,9,9:0:0:9,9:324,303:-49.0881,-22.6259,-19.9166,-26.7966,0,-24.0873	1/1:39:0,39,0:0:0:39,0:1400,0:-126.246,-11.7402,0,-126.246,-11.7402,-126.246	1/2:25:0,9,15:0:0:9,15:324,535:-65.4546,-39.0025,-36.2932,-26.5358,0,-22.0203	1/1:134:0,134,0:0:0:134,0:4794,0:-431.305,-40.338,0,-431.305,-40.338,-431.305	1/1:101:0,101,0:0:0:101,0:3624,0:-326.095,-30.404,0,-326.095,-30.404,-326.095	1/1:107:0,107,0:0:0:107,0:3808,0:-342.895,-32.2102,0,-342.895,-32.2102,-342.895	1/1:81:0,80,0:0:0:80,0:2846,0:-256.143,-24.0824,0,-256.143,-24.0824,-256.143	1/2:29:0,16,13:0:0:16,13:572,456:-81.4563,-34.8289,-30.0124,-46.9686,0,-43.0552	1/1:52:0,52,0:0:0:52,0:1868,0:-168.384,-15.6536,0,-168.384,-15.6536,-168.384	1/2:147:0,77,70:0:0:77,70:2742,2469:-416.401,-192.913,-169.733,-223.835,0,-202.763	1/1:204:1,201,0:1:36:201,0:7209,0:-644.937,-57.5544,0,-645.238,-60.507,-648.175	1/2:34:0,20,14:0:0:20,14:720,504:-97.2549,-38.4927,-32.4721,-59.1082,0,-54.8938	1/1:170:1,169,0:1:36:169,0:6048,0:-540.525,-47.5768,0,-540.826,-50.8741,-543.763	1/1:87:0,85,1:0:0:85,1:3017,34:-271.328,-25.5876,0,-268.729,-23.0055,-268.428	1/1:83:1,82,0:1:33:82,0:2932,0:-260.77,-21.6864,0,-261.071,-24.6845,-263.739	.:.:.:.:.:.:.:.	1/2:14:0,7,7:0:0:7,7:252,236:-38.7771,-18.2154,-16.1082,-20.9002,0,-18.793	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:155:0,155,0:0:0:155,0:5544,0:-498.954,-46.6597,0,-498.954,-46.6597,-498.954	1/1:138:0,137,0:0:0:137,0:4898,0:-440.677,-41.2411,0,-440.677,-41.2411,-440.677	1/2:45:0,18,27:0:0:18,27:644,969:-123.672,-71.145,-65.7264,-52.8721,0,-44.7442	.:.:.:.:.:.:.:.	1/2:92:0,56,36:0:0:56,36:2008,1271:-260.38,-96.6074,-79.7498,-164.114,0,-153.277	1/1:27:0,27,0:0:0:27,0:964,0:-87.0722,-8.12781,0,-87.0722,-8.12781,-87.0722	1/2:117:0,74,43:0:0:74,43:2652,1501:-329.149,-112.88,-90.6038,-216.605,0,-203.661	1/2:55:0,31,24:0:0:31,24:1103,855:-156.005,-66.1091,-56.7771,-90.2417,0,-83.017	1/1:55:0,55,0:0:0:55,0:1968,0:-177.352,-16.5567,0,-177.352,-16.5567,-177.352	1/1:70:0,70,0:0:0:70,0:2491,0:-224.332,-21.0721,0,-224.332,-21.0721,-224.332	1/1:130:0,129,1:0:0:129,1:4607,21:-414.231,-38.8329,0,-412.913,-37.3332,-412.612	1/1:150:0,150,0:0:0:150,0:5346,0:-481.23,-45.1545,0,-481.23,-45.1545,-481.23	1/1:58:0,57,1:0:0:57,1:2021,36:-181.8,-17.1587,0,-179.02,-14.0361,-178.719	1/2:116:0,61,55:0:0:61,55:2180,1942:-328.701,-150.951,-132.588,-178.097,0,-161.541	1/1:101:0,100,1:0:0:100,1:3588,36:-322.749,-30.103,0,-319.814,-26.8095,-319.513	1/1:9:0,9,0:0:0:9,0:324,0:-29.5035,-2.70927,0,-29.5035,-2.70927,-29.5035	1/2:117:0,76,41:0:0:76,41:2721,1466:-328.266,-106.383,-83.5042,-222.217,0,-209.875	1/1:46:0,46,0:0:0:46,0:1641,0:-147.973,-13.8474,0,-147.973,-13.8474,-147.973	1/2:6:0,4,2:0:0:4,2:144,64:-16.8575,-5.06684,-3.86272,-12.1095,0,-11.5074	1/2:120:0,48,71:0:0:48,71:1701,2506:-328.274,-189.845,-175.396,-138.525,0,-117.152	1/1:49:0,48,1:0:0:48,1:1715,21:-154.422,-14.4494,0,-152.836,-12.6508,-152.535	1/2:10:0,5,5:0:0:5,5:180,180:-29.1956,-14.506,-13.0009,-15.0435,0,-13.5384	1/2:5:0,2,3:0:0:2,3:57,101:-12.7853,-8.2761,-7.67404,-4.81125,0,-3.90816	1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chr03	24309234	.	A	G	183642	PASS	AB=0.511561;ABP=5.42026;AC=156;AF=0.83871;AN=186;AO=6565;CIGAR=1X;DP=7590;DPB=7590;DPRA=0;EPP=12.0154;EPPR=42.4637;GTI=1;LEN=1;MEANALT=1.07527;MQM=59.9875;MQMR=59.9941;NS=93;NUMALT=1;ODDS=1.51725;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233566;QR=36206;RO=1018;RPL=3366;RPP=12.235;RPPR=42.4637;RPR=3199;RUN=1;SAF=1;SAP=14250;SAR=6564;SRF=0;SRP=2213.57;SRR=1018;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:13,3:13:460:3:99:-4.06776,0,-36.5595	1/1:81:0,81:0:0:81:2846:-256.377,-24.3834,0	0/1:53:20,33:20:716:33:1177:-90.2833,0,-48.8131	1/1:144:0,144:0:0:144:5135:-462.294,-43.3483,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:57:1,56:1:36:56:2008:-177.395,-13.5604,0	1/1:108:0,108:0:0:108:3844:-346.155,-32.5112,0	1/1:87:0,87:0:0:87:3104:-279.588,-26.1896,0	0/1:96:39,57:39:1392:57:2029:-153.982,0,-96.6801	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:74:0,74:0:0:74:2641:-237.935,-22.2762,0	1/1:101:0,101:0:0:101:3607:-324.832,-30.404,0	1/1:103:0,102:0:0:102:3601:-324.055,-30.7051,0	1/1:85:0,85:0:0:85:2997:-269.96,-25.5876,0	0/1:59:27,32:27:964:32:1115:-82.8928,0,-69.3161	0/1:96:43,53:43:1514:53:1900:-142.379,0,-107.653	1/1:106:0,106:0:0:106:3753:-337.954,-31.9092,0	0/1:40:23,17:23:797:17:585:-40.9304,0,-60.0045	1/1:146:0,146:0:0:146:5228:-470.658,-43.9504,0	1/1:125:0,125:0:0:125:4456:-401.213,-37.6288,0	1/1:79:0,79:0:0:79:2806:-252.78,-23.7814,0	1/1:84:0,84:0:0:84:2999:-270.142,-25.2865,0	0/1:82:42,40:42:1485:40:1424:-103.773,0,-109.258	1/1:66:0,66:0:0:66:2352:-211.939,-19.868,0	0/1:229:111,118:111:3958:118:4211:-310.236,0,-287.472	1/1:155:0,155:0:0:155:5501:-495.219,-46.6597,0	0/1:45:30,15:30:1067:15:540:-35.3902,0,-82.7949	1/1:138:0,137:0:0:137:4892:-440.164,-41.2411,0	1/1:161:2,159:2:72:159:5625:-499.538,-41.6291,0	1/1:111:0,111:0:0:111:3934:-354.255,-33.4143,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:211:0,211:0:0:211:7512:-676.124,-63.5173,0	1/1:137:1,136:1:36:136:4809:-429.342,-37.6428,0	0/1:68:36,32:36:1257:32:1152:-83.5201,0,-92.96	.:.:.:.:.:.:.:.	0/1:78:35,43:35:1234:43:1516:-113.251,0,-87.8823	1/1:38:0,38:0:0:38:1338:-120.716,-11.4391,0	0/1:94:34,60:34:1216:60:2123:-163.042,0,-81.4497	0/1:99:55,44:55:1942:44:1557:-110.618,0,-145.25	1/1:95:0,94:0:0:94:3359:-302.312,-28.2968,0	1/1:106:0,105:0:0:105:3764:-338.599,-31.6082,0	1/1:69:0,69:0:0:69:2423:-218.325,-20.7711,0	1/1:139:0,138:0:0:138:4916:-442.228,-41.5421,0	1/1:100:0,100:0:0:100:3562:-320.788,-30.103,0	0/1:58:21,37:21:752:37:1324:-102.002,0,-50.5465	1/1:97:0,97:0:0:97:3444:-310.173,-29.1999,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:75:38,37:38:1347:37:1324:-96.8848,0,-98.9522	1/1:41:0,41:0:0:41:1444:-130.253,-12.3422,0	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/1:71:28,43:28:1008:43:1523:-115.989,0,-69.6632	1/1:33:0,33:0:0:33:1157:-104.434,-9.93399,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:19:3,16:3:104:16:564:-45.3707,0,-3.98324	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	1/1:139:0,139:0:0:139:4980:-448.348,-41.8432,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:104:0,104:0:0:104:3666:-330.145,-31.3071,0	1/1:178:0,178:0:0:178:6322:-569.075,-53.5833,0	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	1/1:111:0,111:0:0:111:3945:-355.243,-33.4143,0	0/1:66:47,19:47:1680:19:680:-41.6612,0,-131.619	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:61:0,61:0:0:61:2176:-196.107,-18.3628,0	1/1:125:0,125:0:0:125:4453:-400.94,-37.6288,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:98:42,56:42:1496:56:1990:-149.872,0,-105.434	1/1:71:0,71:0:0:71:2527:-227.682,-21.3731,0	1/1:201:0,201:0:0:201:7167:-645.089,-60.507,0	1/1:91:0,91:0:0:91:3246:-292.36,-27.3937,0	0/1:71:19,52:19:684:52:1856:-145.947,0,-40.5172	1/1:96:0,96:0:0:96:3431:-309.003,-28.8989,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:53:19,34:19:680:34:1189:-91.3594,0,-45.5746	1/1:62:0,62:0:0:62:2195:-197.759,-18.6639,0	1/1:135:0,134:0:0:134:4792:-431.226,-40.338,0	1/1:119:0,119:0:0:119:4241:-381.869,-35.8226,0	0/1:79:39,40:39:1404:40:1397:-102.241,0,-102.878	0/1:114:65,49:65:2301:49:1760:-124.366,0,-173.033	1/1:188:0,188:0:0:188:6685:-601.728,-56.5936,0	1/1:37:1,36:1:36:36:1266:-110.643,-7.53984,0	1/1:88:0,88:0:0:88:3135:-282.376,-26.4906,0	1/1:76:0,76:0:0:76:2697:-242.974,-22.8783,0	0/1:66:32,34:32:1126:34:1212:-89.5183,0,-81.7786	0/1:110:58,52:58:2079:52:1848:-133.484,0,-154.266	0/1:104:76,28:76:2719:28:995:-58.5569,0,-213.646	1/1:42:0,42:0:0:42:1477:-133.221,-12.6433,0	1/1:117:0,117:0:0:117:4198:-378,-35.2205,0
chr03	24309294	.	T	C	16290.8	PASS	AB=0.485828;ABP=6.51856;AC=31;AF=0.164894;AN=188;AO=992;CIGAR=1X;DP=6746;DPB=6746;DPRA=0.977629;EPP=2131.13;EPPR=12350.4;GTI=1;LEN=1;MEANALT=1;MQM=59.9889;MQMR=59.9651;NS=94;NUMALT=1;ODDS=7.15808;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35388;QR=205867;RO=5754;RPL=3;RPP=2131.13;RPPR=12350.4;RPR=989;RUN=1;SAF=992;SAP=2157.11;SAR=0;SRF=5754;SRP=12497.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:35,38:35:1252:38:1349:-99.7331,0,-91.0099	0/0:90:90,0:90:3197:0:0:0,-27.0927,-287.953	0/1:307:165,142:165:5890:142:5065:-363.579,0,-437.365	0/0:225:225,0:225:8042:0:0:0,-67.7317,-723.797	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.221	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/1:94:57,37:57:2044:37:1297:-88.7245,0,-155.935	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.134	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:55:23,32:23:828:32:1140:-86.3526,0,-58.2875	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:14:5,9:5:176:9:324:-25.2914,0,-11.9706	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946	0/0:112:112,0:112:4007:0:0:0,-33.7154,-360.819	0/0:94:94,0:94:3356:0:0:0,-28.2968,-302.231	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:57:34,23:34:1224:23:828:-57.6854,0,-93.3083	0/0:49:49,0:49:1722:0:0:0,-14.7505,-154.483	0/1:146:77,69:77:2749:69:2480:-179.503,0,-203.7	0/0:233:233,0:233:8344:0:0:0,-70.14,-750.964	0/1:24:18,6:18:644:6:216:-12.5658,0,-51.0659	0/0:208:208,0:208:7411:0:0:0,-62.6142,-667.031	0/0:122:119,3:119:4230:3:108:0,-26.6505,-370.804	0/0:89:88,1:88:3136:1:36:0,-23.1934,-278.866	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.6223	0/1:6:3,3:3:93:3:108:-8.26899,0,-6.87055	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:134:133,1:133:4788:1:36:0,-36.7397,-427.475	0/0:86:86,0:86:3069:0:0:0,-25.8886,-276.437	0/1:23:6,17:6:216:17:608:-48.1283,0,-12.8668	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:115:69,46:69:2472:46:1632:-112.548,0,-188.115	0/0:31:31,0:31:1116:0:0:0,-9.33193,-99.7298	0/1:91:45,46:45:1612:46:1648:-121.215,0,-117.976	0/1:41:22,19:22:792:19:684:-49.5481,0,-59.2634	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:60:60,0:60:2122:0:0:0,-18.0618,-191.245	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:62:34,28:34:1205:28:1008:-72.3725,0,-90.09	0/0:151:151,0:151:5420:0:0:0,-45.4555,-487.928	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:90:42,48:42:1512:48:1709:-127.001,0,-109.282	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:13:12,1:12:428:1:36:0,-0.315115,-35.2605	0/1:104:58,46:58:2072:46:1643:-116.851,0,-155.444	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.161	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:92:92,0:92:3297:0:0:0,-27.6948,-296.947	0/0:98:95,3:95:3416:3:108:0,-19.4258,-297.578	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:95:95,0:95:3397:0:0:0,-28.5978,-305.943	0/0:91:90,1:90:3232:1:36:0,-23.7955,-287.503	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.007	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:145:46,99:46:1656:99:3537:-274.888,0,-105.679	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:46:46,0:46:1633:0:0:0,-13.8474,-147.257	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:121:80,41:80:2868:41:1448:-94.1913,0,-221.929	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:206:206,0:206:7342:0:0:0,-62.0122,-660.83	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/1:54:30,24:30:1076:24:842:-59.8414,0,-80.8972	0/0:57:56,1:56:1997:1:36:0,-13.5604,-176.404	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	0/1:77:43,34:43:1544:34:1205:-85.5746,0,-116.074	0/0:46:46,0:46:1614:0:0:0,-13.8474,-145.458	0/0:168:168,0:168:6024:0:0:0,-50.573,-542.263	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:46:26,20:26:936:20:720:-51.2814,0,-70.7121	0/1:40:21,19:21:752:19:684:-49.8491,0,-55.9651	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/1:83:41,42:41:1472:42:1492:-109.589,0,-107.791	0/1:51:19,32:19:684:32:1144:-87.917,0,-46.5378	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193
chr03	24333136	.	T	C	135747	PASS	AB=0.467928;ABP=22.3712;AC=157;AF=0.835106;AN=188;AO=6251;CIGAR=1X;DP=7421;DPB=7421;DPRA=79.7849;EPP=13576.9;EPPR=2526.26;GTI=1;LEN=1;MEANALT=1.08602;MQM=59.9963;MQMR=60;NS=94;NUMALT=1;ODDS=2.36194;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221396;QR=41521;RO=1162;RPL=0;RPP=13576.9;RPPR=2526.26;RPR=6251;RUN=1;SAF=6251;SAP=13576.9;SAR=0;SRF=1162;SRP=2526.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:20,37:20:720:37:1324:-102.303,0,-47.9701	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	0/1:169:77,92:77:2764:92:3260:-242.749,0,-198.127	1/1:280:0,279:0:0:279:9851:-886.19,-83.9874,0	1/1:25:1,24:1:36:24:852:-73.4021,-3.92748,0	1/1:23:0,23:0:0:23:803:-72.5884,-6.92369,0	1/1:44:0,44:0:0:44:1564:-141.052,-13.2453,0	1/1:100:0,100:0:0:100:3551:-319.8,-30.103,0	1/1:114:0,114:0:0:114:4054:-365.05,-34.3174,0	0/1:60:24,36:24:864:36:1284:-97.8016,0,-60.0208	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:70:0,70:0:0:70:2488:-224.173,-21.0721,0	1/1:48:0,48:0:0:48:1686:-152.025,-14.4494,0	1/1:33:0,33:0:0:33:1158:-104.525,-9.93399,0	1/1:46:0,46:0:0:46:1632:-147.169,-13.8474,0	0/1:41:19,22:19:684:22:783:-58.4501,0,-49.5481	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	1/1:20:0,20:0:0:20:695:-62.8714,-6.0206,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:136:1,134:1:36:134:4772:-426.042,-37.4006,0	1/1:100:0,100:0:0:100:3532:-318.094,-30.103,0	1/1:108:0,108:0:0:108:3824:-344.361,-32.5112,0	1/1:105:1,104:1:36:104:3693:-328.976,-28.0099,0	0/1:68:36,32:36:1266:32:1127:-81.2674,0,-93.7686	1/1:78:0,77:0:0:77:2735:-246.034,-23.1793,0	0/1:234:142,92:142:5069:92:3247:-222.011,0,-385.913	1/1:165:0,165:0:0:165:5874:-528.775,-49.67,0	0/1:14:7,7:7:252:7:239:-17.6283,0,-18.8145	1/1:235:0,235:0:0:235:8360:-752.414,-70.7421,0	1/1:86:1,85:1:36:85:3024:-268.794,-22.2903,0	1/1:89:0,89:0:0:89:3126:-281.567,-26.7917,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:26:19,6:19:661:6:208:-11.1754,0,-51.9266	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,4:0:0:4:140:-12.5867,-1.20412,0	1/1:109:1,108:1:36:108:3814:-339.863,-29.214,0	1/1:111:1,110:1:36:110:3925:-349.844,-29.8161,0	0/1:21:13,8:13:468:8:284:-19.5817,0,-36.138	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:124:66,58:66:2364:58:2044:-146.905,0,-175.691	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	0/1:197:111,86:111:3964:86:3034:-213.989,0,-297.649	0/1:24:7,17:7:252:17:600:-47.1045,0,-15.8042	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:202:0,202:0:0:202:7170:-645.365,-60.8081,0	1/1:102:0,102:0:0:102:3624:-326.368,-30.7051,0	1/1:186:0,185:0:0:185:6552:-589.41,-55.6906,0	1/1:63:0,63:0:0:63:2222:-200.245,-18.9649,0	0/1:84:47,37:47:1688:37:1320:-93.8154,0,-126.92	1/1:134:0,134:0:0:134:4737:-426.489,-40.338,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:130:59,71:59:2112:71:2532:-188.998,0,-151.215	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:147:74,73:74:2613:73:2587:-188.827,0,-191.167	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:74:0,74:0:0:74:2613:-235.418,-22.2762,0	1/1:73:0,73:0:0:73:2583:-232.72,-21.9752,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:205:0,205:0:0:205:7312:-658.134,-61.7112,0	1/1:177:0,177:0:0:177:6237:-561.434,-53.2823,0	1/1:59:0,59:0:0:59:2074:-186.93,-17.7608,0	1/1:135:0,134:0:0:134:4744:-426.764,-40.338,0	1/1:219:3,216:3:108:216:7633:-676.944,-55.8504,0	0/1:230:168,62:168:6028:62:2184:-127.59,0,-473.386	1/1:14:0,14:0:0:14:492:-44.6123,-4.21442,0	1/1:78:0,78:0:0:78:2760:-248.642,-23.4803,0	1/1:45:0,45:0:0:45:1573:-141.858,-13.5464,0	1/1:22:0,22:0:0:22:771:-69.7103,-6.62266,0	0/1:154:95,59:95:3389:59:2100:-142.911,0,-258.866	1/1:46:0,46:0:0:46:1617:-145.819,-13.8474,0	1/1:155:0,155:0:0:155:5481:-493.424,-46.6597,0	1/1:152:0,152:0:0:152:5412:-487.214,-45.7566,0	0/1:97:37,60:37:1315:60:2096:-159.708,0,-89.4511	1/1:64:0,64:0:0:64:2271:-204.652,-19.2659,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:105:45,60:45:1600:60:2126:-160,0,-112.682	1/1:130:0,130:0:0:130:4573:-411.743,-39.1339,0	1/1:125:0,124:0:0:124:4395:-395.367,-37.3277,0	1/1:45:0,45:0:0:45:1581:-142.578,-13.5464,0	0/1:55:25,30:25:896:30:1072:-80.2358,0,-64.4037	0/1:10:3,7:3:108:7:243:-19.1972,0,-7.06487	1/1:76:0,76:0:0:76:2682:-241.626,-22.8783,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:29:0,29:0:0:29:1014:-91.57,-8.72987,0	1/1:49:0,49:0:0:49:1703:-153.553,-14.7505,0	0/1:8:2,6:2:72:6:207:-16.5587,0,-4.42848	0/1:32:11,21:11:396:21:748:-58.0123,0,-26.3498	0/1:27:16,11:16:572:11:392:-27.4922,0,-43.6856	1/1:173:0,173:0:0:173:6133:-552.077,-52.0782,0	1/1:40:0,40:0:0:40:1419:-128.007,-12.0412,0
chr03	24333146	.	G	A	19682.6	PASS	AB=0.526411;ABP=16.4303;AC=31;AF=0.164894;AN=188;AO=1176;CIGAR=1X;DP=7575;DPB=7575;DPRA=1.0608;EPP=2547.98;EPPR=13813.7;GTI=1;LEN=1;MEANALT=1.10811;MQM=60;MQMR=59.9981;NS=94;NUMALT=1;ODDS=1.95733;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41716;QR=227903;RO=6392;RPL=1;RPP=2547.98;RPPR=13813.7;RPR=1175;RUN=1;SAF=1176;SAP=2556.66;SAR=0;SRF=6392;SRP=13883.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:36,22:36:1292:22:776:-52.7024,0,-99.124	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.659	0/1:172:95,77:95:3378:77:2733:-194.435,0,-252.457	0/0:286:285,0:285:10198:0:0:0,-85.7935,-917.385	0/0:24:23,1:23:828:1:36:0,-3.62644,-71.2458	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:95:95,0:95:3363:0:0:0,-28.5978,-302.884	0/0:114:113,0:113:4048:0:0:0,-34.0164,-364.147	0/1:61:37,24:37:1323:24:849:-58.365,0,-101.008	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.116	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:37:37,0:37:1298:0:0:0,-11.1381,-117.117	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:40:21,19:21:756:19:684:-49.8491,0,-56.326	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/0:139:138,1:138:4933:1:36:0,-38.2449,-440.521	0/0:101:101,0:101:3577:0:0:0,-30.404,-322.136	0/0:114:114,0:114:4050:0:0:0,-34.3174,-364.687	0/0:105:104,1:104:3724:1:32:0,-28.4088,-332.162	0/1:69:33,36:33:1184:36:1272:-94.0118,0,-86.0972	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:248:99,149:99:3543:149:5257:-398.611,0,-244.423	0/0:171:170,0:170:6065:0:0:0,-51.1751,-545.594	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/0:238:238,0:238:8484:0:0:0,-71.6451,-763.558	0/0:90:88,1:88:3156:1:36:0,-23.5532,-280.666	0/0:95:95,0:95:3373:0:0:0,-28.5978,-303.786	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:28:8,20:8:284:20:705:-55.3439,0,-17.4745	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:109:109,0:109:3897:0:0:0,-32.8123,-350.922	0/0:113:112,1:112:4012:1:36:0,-30.4181,-357.671	0/1:22:8,14:8:284:14:504:-39.0754,0,-19.2807	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:132:64,68:64:2280:68:2428:-179.04,0,-165.723	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:201:90,111:90:3202:111:3956:-295.725,0,-227.894	0/1:25:18,7:18:632:7:252:-15.5032,0,-49.681	0/0:25:25,0:25:865:0:0:0,-7.52575,-78.1632	0/0:207:207,0:207:7379:0:0:0,-62.3132,-664.156	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.845	0/0:192:192,0:192:6845:0:0:0,-57.7978,-616.122	0/0:63:63,0:63:2226:0:0:0,-18.9649,-200.601	0/1:84:38,46:38:1337:46:1624:-121.162,0,-95.3414	0/0:140:140,0:140:4912:0:0:0,-42.1442,-442.232	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:132:73,59:73:2611:59:2100:-149.534,0,-195.501	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:153:75,78:75:2692:78:2760:-202.586,0,-196.467	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:4,8:4:144:8:280:-21.9269,0,-9.70126	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/0:77:77,0:77:2741:0:0:0,-23.1793,-246.931	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:206:206,0:206:7346:0:0:0,-62.0122,-661.186	0/0:184:182,1:182:6460:1:36:0,-51.85,-577.887	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:134:134,0:134:4742:0:0:0,-40.338,-426.941	0/0:218:215,3:215:7701:3:108:0,-55.5494,-683.046	0/1:234:65,168:65:2319:168:5954:-465.472,0,-138.47	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8116	0/1:154:62,92:62:2224:92:3234:-244.924,0,-154.066	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:163:163,0:163:5794:0:0:0,-49.0679,-521.576	0/0:156:156,0:156:5565:0:0:0,-46.9607,-500.974	0/1:98:59,38:59:2116:38:1352:-92.4207,0,-161.149	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.952	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:104:60,44:60:2137:44:1556:-109.025,0,-161.289	0/0:131:131,0:131:4664:0:0:0,-39.4349,-419.922	0/0:129:129,0:129:4606:0:0:0,-38.8329,-414.701	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/1:56:30,26:30:1080:26:932:-67.3412,0,-80.6556	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.977	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:32:21,11:21:752:11:396:-26.3498,0,-58.3733	0/1:28:11,17:11:387:17:604:-46.2618,0,-26.7371	0/0:182:182,0:182:6457:0:0:0,-54.7875,-581.217	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416
chr03	24333329	.	C	T	15501.1	PASS	AB=0.463803;ABP=26.5905;AC=31;AF=0.164894;AN=188;AO=981;CIGAR=1X;DP=7993;DPB=7993;DPRA=0.977411;EPP=2133.22;EPPR=15192.5;GTI=3;LEN=1;MEANALT=1.02564;MQM=59.9918;MQMR=59.9999;NS=94;NUMALT=1;ODDS=5.3088;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35139;QR=249821;RO=7007;RPL=0;RPP=2133.22;RPPR=15192.5;RPR=981;RUN=1;SAF=0;SAP=2133.22;SAR=981;SRF=0;SRP=15218.5;SRR=7007;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:28,10:28:1004:10:360:-21.3052,0,-79.2367	0/0:93:93,0:93:3316:0:0:0,-27.9958,-298.659	0/1:97:49,48:49:1752:48:1728:-126.605,0,-128.764	0/0:176:175,1:175:6268:1:36:0,-49.383,-560.615	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:99:99,0:99:3519:0:0:0,-29.802,-316.921	0/0:149:149,0:149:5287:0:0:0,-44.8535,-475.968	0/0:118:117,1:117:4176:1:36:0,-31.9233,-372.422	0/1:93:55,38:55:1976:38:1349:-93.7125,0,-150.119	0/0:25:25,0:25:857:0:0:0,-7.52575,-77.4391	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:39:39,0:39:1382:0:0:0,-11.7402,-124.677	0/1:37:20,17:20:699:17:612:-44.2753,0,-52.0943	0/1:52:37,15:37:1312:15:536:-32.9213,0,-102.728	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.169	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:177:176,0:176:6307:0:0:0,-52.9813,-567.361	0/0:188:188,0:188:6740:0:0:0,-56.5936,-606.673	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:115:81,34:81:2904:34:1224:-75.8486,0,-226.977	0/0:67:67,0:67:2380:0:0:0,-20.169,-214.459	0/1:335:166,169:166:5924:169:6059:-444.558,0,-432.423	0/0:225:225,0:225:8051:0:0:0,-67.7317,-724.609	0/1:18:11,7:11:388:7:252:-17.6104,0,-29.8388	0/0:174:174,0:174:6209:0:0:0,-52.3792,-558.907	0/0:141:128,13:128:4587:13:464:0,-0.347719,-370.896	0/0:148:148,0:148:5289:0:0:0,-44.5524,-476.145	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:147:147,0:147:5182:0:0:0,-44.2514,-466.52	0/0:209:209,0:209:7442:0:0:0,-62.9153,-669.826	0/1:31:21,10:21:756:10:356:-23.0493,0,-59.0353	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:105:52,53:52:1864:53:1896:-139.31,0,-136.431	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:170:100,70:100:3566:70:2497:-173.806,0,-269.973	0/1:37:17,20:17:584:20:720:-53.9907,0,-41.7427	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:149:147,0:147:5269:0:0:0,-44.2514,-474.044	0/0:111:110,0:110:3912:0:0:0,-33.1133,-351.913	0/0:195:195,0:195:6969:0:0:0,-58.7008,-627.274	0/0:114:114,0:114:4075:0:0:0,-34.3174,-366.936	0/1:149:70,79:70:2504:79:2836:-210.625,0,-180.759	0/0:132:132,0:132:4718:0:0:0,-39.736,-424.779	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:112:69,43:69:2446:43:1529:-104.186,0,-186.679	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:110:59,51:59:2120:51:1824:-131.328,0,-157.955	0/0:38:37,1:37:1306:1:36:0,-7.84086,-114.242	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:79:78,1:78:2787:1:36:0,-20.1831,-247.472	0/0:105:105,0:105:3721:0:0:0,-31.6081,-335.093	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:244:244,0:244:8714:0:0:0,-73.4513,-784.25	0/0:245:243,1:243:8683:1:36:0,-70.2129,-777.863	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.497	0/0:81:81,0:81:2852:0:0:0,-24.3834,-256.916	0/0:176:175,1:175:6204:1:36:0,-49.383,-554.861	0/1:69:14,55:14:495:55:1961:-155.992,0,-24.112	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:76:76,0:76:2693:0:0:0,-22.8783,-242.614	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:63:33,30:33:1160:30:1076:-78.188,0,-85.739	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:227:226,1:226:8039:1:36:0,-64.7355,-719.933	0/0:144:144,0:144:5146:0:0:0,-43.3483,-463.281	0/1:59:35,24:35:1256:24:856:-59.6003,0,-95.5845	0/0:79:79,0:79:2823:0:0:0,-23.7814,-254.309	0/1:28:13,15:13:464:15:536:-40.146,0,-33.6687	0/1:101:54,47:54:1905:47:1684:-121.443,0,-141.322	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:229:229,0:229:8157:0:0:0,-68.9359,-734.146	0/0:95:95,0:95:3348:0:0:0,-28.5978,-301.539	0/1:40:16,24:16:568:24:864:-66.0414,0,-39.4107	0/1:51:23,28:23:824:28:1008:-75.6838,0,-59.1308	0/0:110:110,0:110:3889:0:0:0,-33.1133,-350.207	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:53:53,0:53:1858:0:0:0,-15.9546,-167.496	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/1:18:15,3:15:532:3:108:-4.65663,0,-42.7945	0/1:48:30,18:30:1072:18:648:-44.2024,0,-82.343	0/1:34:10,24:10:360:24:864:-67.8475,0,-22.5093	0/0:72:72,0:72:2570:0:0:0,-21.6742,-231.549	0/0:60:60,0:60:2122:0:0:0,-18.0618,-191.248
chr03	24333354	.	T	A	15485.9	PASS	AB=0.459924;ABP=32.2506;AC=31;AF=0.164894;AN=188;AO=979;CIGAR=1X;DP=8099;DPB=8099;DPRA=0.849658;EPP=2128.88;EPPR=15416.2;GTI=3;LEN=1;MEANALT=1.05405;MQM=60;MQMR=59.9904;NS=94;NUMALT=1;ODDS=5.87728;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35062;QR=255166;RO=7118;RPL=979;RPP=2128.88;RPPR=15416.2;RPR=0;RUN=1;SAF=0;SAP=2128.88;SAR=979;SRF=0;SRP=15459.6;SRR=7118;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:28,10:28:1008:10:345:-19.9417,0,-79.5972	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.584	0/1:101:50,51:50:1800:51:1817:-133.406,0,-131.878	0/0:184:184,0:184:6573:0:0:0,-55.3895,-591.651	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:153:153,0:153:5496:0:0:0,-46.0576,-494.764	0/0:120:119,1:119:4280:1:36:0,-32.5253,-381.777	0/1:95:57,38:57:2033:38:1366:-94.643,0,-154.643	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:56:55,1:55:1980:1:36:0,-13.2594,-174.876	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9907	0/1:52:37,15:37:1332:15:540:-33.283,0,-104.529	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:178:178,0:178:6362:0:0:0,-53.5833,-572.668	0/0:189:189,0:189:6738:0:0:0,-56.8947,-606.494	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:119:83,35:83:2972:35:1252:-77.1038,0,-231.831	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/1:340:170,170:170:6101:170:6101:-446.837,0,-446.837	0/0:232:232,0:232:8291:0:0:0,-69.839,-746.109	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/0:179:179,0:179:6413:0:0:0,-53.8844,-577.255	0/0:139:129,10:129:4621:10:349:0,-10.0984,-384.306	0/0:149:149,0:149:5318:0:0:0,-44.8535,-478.752	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:149:149,0:149:5352:0:0:0,-44.8535,-481.81	0/0:205:205,0:205:7349:0:0:0,-61.7111,-661.455	0/1:31:21,10:21:756:10:356:-23.0493,0,-59.0353	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:109:54,55:54:1940:55:1968:-144.583,0,-142.064	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:173:101,72:101:3624:72:2566:-179.111,0,-274.286	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2753	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:152:152,0:152:5460:0:0:0,-45.7566,-491.209	0/0:114:114,0:114:4066:0:0:0,-34.3174,-366.124	0/0:202:202,0:202:7260:0:0:0,-60.8081,-653.179	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/1:147:70,77:70:2512:77:2766:-204.93,0,-182.08	0/0:135:135,0:135:4821:0:0:0,-40.639,-434.044	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:111:68,43:68:2448:43:1544:-105.839,0,-187.16	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.784	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:116:64,52:64:2304:52:1860:-132.76,0,-172.701	0/0:38:37,1:37:1332:1:36:0,-7.84086,-116.584	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.276	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:247:247,0:247:8868:0:0:0,-74.3544,-798.101	0/0:250:249,1:249:8917:1:36:0,-71.6592,-798.912	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:180:179,1:179:6400:1:36:0,-50.5871,-572.491	0/1:68:13,54:13:464:54:1932:-153.628,0,-21.5689	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:64:35,29:35:1256:29:1040:-74.6484,0,-94.0794	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:229:229,0:229:8205:0:0:0,-68.9359,-738.46	0/0:146:146,0:146:5225:0:0:0,-43.9504,-470.386	0/1:60:36,24:36:1296:24:864:-60.0208,0,-98.8821	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605	0/1:28:13,15:13:464:15:532:-39.7842,0,-33.6687	0/1:101:54,47:54:1940:47:1680:-121.083,0,-144.472	0/0:93:93,0:93:3348:0:0:0,-27.9958,-301.535	0/0:233:233,0:233:8334:0:0:0,-70.14,-750.064	0/0:94:94,0:94:3365:0:0:0,-28.2968,-303.064	0/1:42:18,24:18:648:24:864:-65.4393,0,-46.0086	0/1:52:24,28:24:864:28:1004:-75.0223,0,-62.429	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.517	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/1:46:29,17:29:1029:17:612:-41.5661,0,-79.0738	0/1:33:10,23:10:360:23:828:-64.9101,0,-22.8103	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307
chr03	24395293	.	A	G	113529	PASS	AB=0.449859;ABP=64.8543;AC=144;AF=0.765957;AN=188;AO=5484;CIGAR=1X;DP=7212;DPB=7212;DPRA=15.4989;EPP=11911.4;EPPR=3746.63;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9686;MQMR=59.9762;NS=94;NUMALT=1;ODDS=0.368553;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195471;QR=61797;RO=1724;RPL=5484;RPP=11911.4;RPPR=3746.63;RPR=0;RUN=1;SAF=0;SAP=11911.4;SAR=5484;SRF=0;SRP=3746.63;SRR=1724;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:89:65,24:65:2340:24:852:-50.2087,0,-184.067	1/1:72:2,70:2:72:70:2490:-216.065,-14.8374,0	0/1:124:74,50:74:2664:50:1757:-121.083,0,-202.677	1/1:99:5,94:5:180:94:3376:-287.503,-13.2499,0	1/1:43:2,41:2:72:41:1458:-124.679,-6.10757,0	0/1:66:9,57:9:324:57:2036:-163.454,0,-9.63787	1/1:49:3,46:3:104:46:1648:-138.906,-5.04766,0	1/1:124:6,118:6:216:118:4203:-358.662,-17.5372,0	1/1:102:7,95:7:252:95:3404:-283.545,-7.6761,0	0/1:68:32,36:32:1148:36:1280:-95.0332,0,-83.1598	1/1:86:7,79:7:252:79:2809:-230.02,-2.85962,0	1/1:112:5,107:5:180:107:3827:-328.074,-17.1633,0	1/1:112:6,106:6:216:106:3774:-320.069,-13.9248,0	1/1:73:4,69:4:144:69:2463:-208.61,-8.66157,0	1/1:84:5,79:5:180:79:2823:-237.757,-8.73446,0	0/1:70:38,32:38:1368:32:1136:-81.4768,0,-102.349	0/1:36:17,19:17:612:19:684:-51.0532,0,-44.5764	1/1:62:2,60:2:72:60:2148:-186.751,-11.8271,0	0/1:81:43,38:43:1540:38:1347:-97.146,0,-114.51	1/1:65:2,63:2:72:63:2238:-194.842,-12.7302,0	1/1:110:8,102:8:284:102:3617:-299.834,-7.20995,0	0/1:37:5,32:5:180:32:1148:-92.4917,0,-5.41395	1/1:87:4,83:4:136:83:2972:-255.137,-13.6141,0	0/1:38:17,21:17:604:21:752:-56.5671,0,-43.2515	1/1:70:1,69:1:36:69:2472:-219.135,-17.4738,0	0/1:148:69,79:69:2480:79:2816:-209.072,0,-178.901	1/1:176:7,168:7:252:168:6016:-518.516,-30.0111,0	0/1:51:31,20:31:1104:20:711:-48.9631,0,-84.3158	1/1:129:8,121:8:288:121:4311:-361.898,-12.5655,0	0/1:81:14,67:14:504:67:2370:-189.174,0,-21.3147	1/1:67:5,62:5:180:62:2208:-182.432,-3.61695,0	0/1:21:16,5:16:572:5:176:-9.86339,0,-45.4918	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	0/1:42:36,6:36:1296:6:195:-5.22649,0,-104.301	0/1:21:12,9:12:428:9:311:-22.0021,0,-32.5372	0/1:71:55,16:55:1955:16:576:-30.8019,0,-154.852	1/1:181:6,175:6:216:175:6245:-542.355,-34.6959,0	1/1:47:0,47:0:0:47:1668:-150.407,-14.1484,0	0/1:73:44,29:44:1576:29:1036:-71.5782,0,-120.156	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:65:31,34:31:1116:34:1212:-89.8194,0,-81.1847	1/1:52:2,50:2:72:50:1775:-153.196,-8.81684,0	0/1:110:79,31:79:2808:31:1104:-66.5573,0,-219.848	0/1:99:55,44:55:1980:44:1555:-110.439,0,-148.672	1/1:80:4,76:4:144:76:2706:-230.469,-10.7688,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	1/1:89:2,87:2:72:87:3095:-271.941,-19.9549,0	1/1:86:1,85:1:36:85:3036:-269.872,-22.2903,0	1/1:65:1,64:1:36:64:2292:-202.943,-15.9687,0	0/1:83:49,34:49:1752:34:1212:-84.4008,0,-132.979	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:78:54,24:54:1940:24:860:-54.2415,0,-151.396	1/1:33:2,29:2:68:29:1035:-86.9956,-3.22408,0	0/1:24:20,4:20:720:4:144:-6.0889,0,-57.9041	0/1:110:77,33:77:2760:33:1180:-73.3947,0,-215.528	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:16:7,9:7:248:9:320:-24.3259,0,-17.8477	1/1:88:1,87:1:36:87:3110:-276.526,-22.8924,0	1/1:110:2,108:2:72:108:3884:-342.916,-26.2766,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	1/1:91:0,90:0:0:90:3212:-288.944,-27.0927,0	1/1:104:3,101:3:108:101:3604:-314.492,-21.232,0	1/1:49:1,48:1:36:48:1704:-150.048,-11.1522,0	0/1:60:10,50:10:352:50:1792:-143.501,0,-13.9564	1/1:126:3,123:3:108:123:4369:-383.31,-27.8546,0	0/1:86:60,26:60:2152:26:936:-58.6709,0,-168.059	0/1:97:16,81:16:576:81:2874:-229.697,0,-22.9751	1/1:41:1,40:1:36:40:1432:-125.579,-8.74396,0	1/1:72:1,71:1:36:71:2516:-223.092,-18.0759,0	0/1:28:4,24:4:144:24:860:-69.293,0,-4.88478	0/1:76:40,36:40:1440:36:1268:-91.4552,0,-107.019	1/1:93:4,89:4:140:89:3157:-271.409,-15.0512,0	1/1:171:6,165:6:216:165:5894:-510.78,-31.6856,0	1/1:44:2,42:2:72:42:1500:-128.458,-6.4086,0	0/1:59:42,17:42:1500:17:612:-37.6527,0,-117.533	1/1:96:6,90:6:216:90:3179:-266.546,-9.10837,0	0/1:54:41,13:41:1464:13:464:-25.8419,0,-115.8	0/1:77:49,28:49:1760:28:1000:-67.1361,0,-135.375	1/1:77:3,74:3:108:74:2643:-228.041,-13.1041,0	1/1:110:2,108:2:72:108:3868:-341.478,-26.2766,0	1/1:88:2,86:2:72:86:3058:-268.613,-19.6539,0	0/1:113:56,57:56:1990:57:2028:-148.776,0,-145.356	0/1:88:45,43:45:1620:43:1529:-111.409,0,-119.599	1/1:133:4,129:4:144:129:4584:-399.412,-26.7234,0	1/1:36:1,35:1:36:35:1256:-109.747,-7.23881,0	1/1:65:3,62:3:108:62:2206:-188.729,-9.49178,0	1/1:79:5,74:5:180:74:2644:-221.654,-7.22931,0	0/1:100:63,37:63:2252:37:1319:-88.9082,0,-172.84	0/1:150:82,68:82:2944:68:2397:-170.832,0,-219.994	0/1:88:66,22:66:2372:22:784:-44.3933,0,-187.247	1/1:74:0,74:0:0:74:2644:-238.207,-22.2762,0	1/1:129:4,125:4:144:125:4425:-385.108,-25.5193,0
chr03	24476713	.	TTTGAATC	TTTCAATC,TTTCAATT	230674	PASS	AB=0.404915,0.587251;ABP=223.526,188.684;AC=155,33;AF=0.824468,0.175532;AN=188;AO=6635,1669;CIGAR=3M1X4M,3M1X3M1X;DP=8391;DPB=8391;DPRA=45.5815,1.11392;EPP=7.64485,324.384;EPPR=0;GTI=2;LEN=1,8;MEANALT=2.25,2.69048;MQM=57.3118,59.5752;MQMR=0;NS=94;NUMALT=2;ODDS=0.295746;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=236899,58774;QR=0;RO=0;RPL=3257,1083;RPP=7.80194,324.384;RPPR=0;RPR=3378,586;RUN=1,1;SAF=6634,1669;SAP=14402,3627.2;SAR=1,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,22,19:0:0:22,19:788,669:-119.039,-54.7711,-48.1485,-64.6221,0,-58.9026	1/1:104:0,102,0:0:0:102,0:3664,0:-329.218,-30.7051,0,-329.218,-30.7051,-329.218	1/2:107:0,39,68:0:0:39,68:1392,2392:-308.503,-195.035,-183.295,-113.823,0,-93.3525	1/1:163:0,163,0:0:0:163,0:5836,0:-525.015,-49.0679,0,-525.015,-49.0679,-525.015	1/1:33:0,29,0:0:0:29,0:1044,0:-93.7185,-8.72987,0,-93.7185,-8.72987,-93.7185	1/1:23:0,23,0:0:0:23,0:819,0:-73.936,-6.92369,0,-73.936,-6.92369,-73.936	1/1:168:0,167,0:0:0:167,0:5984,0:-538.016,-50.272,0,-538.016,-50.272,-538.016	1/1:110:0,110,0:0:0:110,0:3920,0:-352.233,-33.1133,0,-352.233,-33.1133,-352.233	1/1:79:0,77,2:0:0:77,2:2743,62:-246.257,-23.1793,0,-241.283,-17.894,-240.681	1/2:115:0,59,54:0:0:59,54:2120,1911:-328.378,-155.429,-137.668,-172.951,0,-156.695	1/1:76:0,76,0:0:0:76,0:2697,0:-242.855,-22.8783,0,-242.855,-22.8783,-242.855	1/1:72:0,68,0:0:0:68,0:2421,0:-217.413,-20.47,0,-217.413,-20.47,-217.413	1/1:100:0,100,0:0:0:100,0:3581,0:-321.964,-30.103,0,-321.964,-30.103,-321.964	1/1:129:0,128,0:0:0:128,0:4578,0:-411.562,-38.5318,0,-411.562,-38.5318,-411.562	1/1:74:0,74,0:0:0:74,0:2656,0:-239.051,-22.2762,0,-239.051,-22.2762,-239.051	1/2:69:0,30,39:0:0:30,39:1080,1378:-200.688,-112.57,-103.539,-88.4744,0,-76.7342	1/2:76:0,39,36:0:0:39,36:1381,1266:-215.614,-103.119,-91.3785,-112.569,0,-101.732	1/1:80:0,80,0:0:0:80,0:2858,0:-256.758,-24.0824,0,-256.758,-24.0824,-256.758	1/2:55:0,25,27:0:0:25,27:900,956:-151.289,-77.8688,-70.343,-73.4193,0,-65.2915	1/1:183:0,179,1:0:0:179,1:6398,36:-574.932,-53.8844,0,-571.997,-50.9324,-571.695	1/1:114:0,111,0:0:0:111,0:3957,0:-355.681,-33.4143,0,-355.681,-33.4143,-355.681	1/1:66:0,64,1:0:0:64,1:2300,36:-206.867,-19.2659,0,-203.93,-16.3073,-203.629	1/1:25:0,24,0:0:0:24,0:856,0:-76.8283,-7.22472,0,-76.8283,-7.22472,-76.8283	1/2:81:0,38,43:0:0:38,43:1355,1522:-234.569,-124.327,-112.888,-110.597,0,-97.6525	1/1:68:0,67,0:0:0:67,0:2364,0:-212.48,-20.169,0,-212.48,-20.169,-212.48	1/2:284:0,115,169:0:0:115,169:4112,5973:-822.042,-486.753,-452.135,-335.645,0,-284.771	1/1:177:0,176,0:0:0:176,0:6248,0:-561.252,-52.9813,0,-561.252,-52.9813,-561.252	1/2:33:0,14,19:0:0:14,19:504,648:-93.9493,-52.8172,-48.6027,-41.4837,0,-35.7641	1/1:182:0,180,1:0:0:180,1:6415,36:-576.803,-54.1854,0,-573.866,-51.1931,-573.565	1/1:90:0,89,1:0:0:89,1:3192,36:-286.789,-26.7917,0,-283.852,-23.4944,-283.551	1/1:114:0,112,0:0:0:112,0:3988,0:-358.425,-33.7154,0,-358.425,-33.7154,-358.425	2/2:3:0,0,3:0:0:0,3:0,102:-9.5166,-9.5166,-9.5166,-0.90309,-0.90309,0	1/2:11:0,2,9:0:0:2,9:72,311:-31.4925,-25.615,-25.013,-6.23466,0,-3.52539	1/1:2:0,2,0:0:0:2,0:72,0:-6.81953,-0.60206,0,-6.81953,-0.60206,-6.81953	1/1:6:0,6,0:0:0:6,0:216,0:-19.7573,-1.80618,0,-19.7573,-1.80618,-19.7573	1/1:4:0,4,0:0:0:4,0:140,0:-12.9362,-1.20412,0,-12.9362,-1.20412,-12.9362	1/1:166:0,162,0:0:0:162,0:5755,0:-517.399,-48.7669,0,-517.399,-48.7669,-517.399	1/1:130:0,127,0:0:0:127,0:4510,0:-404.85,-38.2308,0,-404.85,-38.2308,-404.85	1/2:77:0,32,44:0:0:32,44:1130,1549:-218.106,-126.085,-116.452,-92.0174,0,-78.7721	1/1:1:0,1,0:0:0:1,0:36,0:-3.59317,-0.30103,0,-3.59317,-0.30103,-3.59317	1/2:148:0,60,87:0:0:60,87:2147,3071:-425.104,-250.052,-231.99,-175.049,0,-148.859	1/1:58:0,58,0:0:0:58,0:2048,0:-184.001,-17.4597,0,-184.001,-17.4597,-184.001	1/2:228:0,88,136:0:0:88,136:3124,4782:-643.705,-389.182,-362.691,-254.545,0,-213.605	1/2:58:0,28,29:0:0:28,29:1008,1015:-164.888,-82.6343,-74.2054,-82.3152,0,-73.5854	1/1:66:0,66,0:0:0:66,0:2339,0:-210.141,-19.868,0,-210.141,-19.868,-210.141	1/1:50:0,50,0:0:0:50,0:1792,0:-161.547,-15.0515,0,-161.547,-15.0515,-161.547	1/1:102:0,100,0:0:0:100,0:3583,0:-321.881,-30.103,0,-321.881,-30.103,-321.881	1/1:140:0,139,0:0:0:139,0:4948,0:-444.801,-41.8432,0,-444.801,-41.8432,-444.801	1/1:104:0,98,1:0:0:98,1:3500,36:-314.308,-29.5009,0,-311.372,-26.5563,-311.071	1/2:137:0,42,93:0:0:42,93:1500,3274:-388.84,-266.549,-253.906,-122.311,0,-94.3151	1/1:159:0,157,0:0:0:157,0:5592,0:-502.871,-47.2617,0,-502.871,-47.2617,-502.871	1/1:5:0,5,0:0:0:5,0:180,0:-16.5401,-1.50515,0,-16.5401,-1.50515,-16.5401	1/2:179:0,35,144:0:0:35,144:1252,5095:-517.426,-415.34,-404.804,-102.442,0,-59.0941	1/1:45:0,45,0:0:0:45,0:1603,0:-144.478,-13.5464,0,-144.478,-13.5464,-144.478	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/2:134:0,52,81:0:0:52,81:1856,2842:-382.712,-231.417,-215.764,-151.437,0,-127.053	1/1:37:0,36,0:0:0:36,0:1286,0:-115.09,-10.8371,0,-115.09,-10.8371,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chr03	24476744	.	C	T	454861	PASS	AB=0.458415;ABP=95.1173;AC=157;AF=0.835106;AN=188;AO=16572;CIGAR=1X;DP=19934;DPB=19934;DPRA=0;EPP=35980;EPPR=7288.3;GTI=0;LEN=1;MEANALT=1.06383;MQM=55.0666;MQMR=59.5502;NS=94;NUMALT=1;ODDS=9.53682;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=588098;QR=118667;RO=3355;RPL=6632;RPP=1436.88;RPPR=4.69376;RPR=9940;RUN=1;SAF=6631;SAP=1438.62;SAR=9941;SRF=1652;SRP=4.69376;SRR=1703;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:29,45:29:1022:45:1586:-119.62,0,-69.9553	1/1:324:0,324:0:0:324:11464:-1026.36,-97.5337,0	0/1:349:193,155:193:6820:155:5495:-386.322,0,-508.399	1/1:417:0,417:0:0:417:14826:-1331.32,-125.53,0	1/1:156:0,156:0:0:156:5554:-497.164,-46.9607,0	1/1:103:0,103:0:0:103:3645:-325.918,-31.0061,0	1/1:343:0,343:0:0:343:12161:-1092.44,-103.253,0	1/1:304:0,304:0:0:304:10774:-965.782,-91.5131,0	1/1:217:1,216:1:36:216:7655:-682.76,-61.7252,0	0/1:281:127,154:127:4498:154:5470:-407.489,0,-319.797	1/1:110:1,109:1:36:109:3881:-344.973,-29.515,0	1/1:157:1,156:1:36:156:5526:-491.468,-43.6725,0	1/1:154:0,154:0:0:154:5506:-493.048,-46.3586,0	1/1:165:1,164:1:36:164:5827:-520.337,-46.0717,0	1/1:157:0,157:0:0:157:5591:-502.069,-47.2617,0	0/1:114:60,54:60:2111:54:1916:-137.393,0,-155.93	0/1:141:68,73:68:2400:73:2547:-186.073,0,-173.79	1/1:146:0,146:0:0:146:5194:-464.208,-43.9504,0	0/1:121:64,57:64:2263:57:1997:-143.271,0,-167.496	1/1:507:1,506:1:36:506:18029:-1612.97,-149.024,0	1/1:379:0,379:0:0:379:13441:-1204.96,-114.09,0	1/1:184:1,183:1:36:183:6509:-581.514,-51.7912,0	1/1:111:1,110:1:36:110:3909:-347.464,-29.8161,0	0/1:253:109,144:109:3865:144:5089:-380.456,0,-271.869	1/1:164:0,164:0:0:164:5776:-516.823,-49.3689,0	0/1:669:383,286:383:13536:286:10129:-709.141,0,-1016.58	1/1:549:0,549:0:0:549:19481:-1743.88,-165.265,0	0/1:54:32,22:32:1100:22:773:-53.6025,0,-82.959	1/1:485:2,483:2:72:483:17121:-1530.15,-139.163,0	1/1:172:1,171:1:36:171:6073:-541.254,-48.1789,0	1/1:227:0,227:0:0:227:8032:-721.042,-68.3338,0	0/1:18:10,8:10:351:8:288:-20.8116,0,-26.5081	0/1:36:20,16:20:720:16:543:-38.2817,0,-54.2847	1/1:13:0,13:0:0:13:464:-41.4097,-3.91339,0	1/1:15:0,15:0:0:15:534:-48.2944,-4.51545,0	1/1:23:0,23:0:0:23:828:-74.5768,-6.92369,0	1/1:345:0,345:0:0:345:12225:-1098.39,-103.855,0	1/1:351:0,351:0:0:351:12396:-1111.38,-105.662,0	0/1:153:83,70:83:2923:70:2496:-178.317,0,-217.105	1/1:9:0,9:0:0:9:324:-29.4532,-2.70927,0	0/1:376:183,193:183:6486:193:6864:-502.688,0,-470.561	1/1:108:1,107:1:36:107:3775:-335.726,-28.913,0	0/1:446:259,187:259:9159:187:6628:-461.296,0,-689.741	0/1:129:67,62:67:2299:62:2181:-157.468,0,-168.329	1/1:131:0,131:0:0:131:4630:-415.378,-39.4349,0	1/1:266:1,265:1:36:265:9417:-842.542,-76.4757,0	1/1:280:0,280:0:0:280:9927:-889.186,-84.2884,0	1/1:415:0,415:0:0:415:14662:-1316.93,-124.927,0	1/1:264:1,263:1:27:263:9363:-837.638,-76.7723,0	0/1:348:199,149:199:7068:149:5316:-372.793,0,-531.338	1/1:401:0,401:0:0:401:14267:-1282.51,-120.713,0	1/1:58:0,58:0:0:58:2036:-182.931,-17.4597,0	0/1:309:204,105:204:7272:105:3756:-244.454,0,-561.482	1/1:98:0,98:0:0:98:3494:-314.365,-29.5009,0	0/1:16:7,9:7:252:9:309:-22.3144,0,-18.2125	0/1:281:148,132:148:5233:132:4649:-333.073,0,-385.892	1/1:117:0,117:0:0:117:4196:-376.117,-35.2205,0	0/1:29:13,16:13:460:16:563:-42.2564,0,-33.0055	0/1:41:15,26:15:540:26:899:-68.8012,0,-36.5943	1/1:215:1,214:1:36:214:7613:-679.352,-61.1232,0	1/1:210:0,210:0:0:210:7446:-669.323,-63.2163,0	1/1:10:0,10:0:0:10:352:-31.9591,-3.0103,0	1/1:246:2,244:2:72:244:8660:-771.514,-67.2167,0	1/1:403:1,402:1:36:402:14299:-1278.96,-117.717,0	1/1:356:0,356:0:0:356:12668:-1136.55,-107.167,0	1/1:194:0,194:0:0:194:6908:-620.076,-58.3998,0	1/1:326:8,318:8:284:318:11283:-987.101,-72.2367,0	0/1:306:219,87:219:7759:87:3104:-187.39,0,-606.057	1/1:80:2,77:2:72:77:2722:-237.212,-17.3041,0	1/1:208:0,208:0:0:208:7374:-660.161,-62.6142,0	1/1:173:2,171:2:72:171:6047:-536.925,-45.2501,0	1/1:39:0,39:0:0:39:1382:-124.539,-11.7402,0	0/1:225:105,120:105:3684:120:4239:-313.108,0,-263.99	1/1:163:0,163:0:0:163:5714:-512.627,-49.0679,0	1/1:277:0,277:0:0:277:9842:-882.831,-83.3853,0	1/1:328:1,327:1:36:327:11651:-1043.05,-95.1396,0	0/1:287:160,127:160:5675:127:4493:-316.266,0,-424.182	1/1:242:3,239:3:99:239:8526:-754.99,-63.6848,0	0/1:22:18,4:18:628:4:144:-6.65749,0,-50.2146	0/1:314:169,145:169:6038:145:5146:-367.547,0,-448.832	1/1:299:2,297:2:72:297:10568:-940.659,-83.1712,0	1/1:420:1,419:1:36:419:14915:-1335.94,-122.834,0	1/1:179:0,179:0:0:179:6374:-572.255,-53.8844,0	0/1:147:68,79:68:2383:79:2818:-209.164,0,-170.157	0/1:187:89,98:89:3154:98:3487:-257.42,0,-227.782	1/1:305:0,305:0:0:305:10839:-973.677,-91.8142,0	1/1:88:1,87:1:36:87:3054:-270.143,-22.8924,0	1/1:148:0,148:0:0:148:5242:-470.01,-44.5524,0	1/1:176:0,174:0:0:174:6203:-555.731,-52.3792,0	0/1:100:45,55:45:1595:55:1929:-143.374,0,-113.737	0/1:163:92,71:92:3240:71:2538:-178.719,0,-242.712	0/1:143:80,62:80:2823:62:2185:-152.878,0,-211.193	1/1:115:0,114:0:0:114:4054:-363.099,-34.3174,0	1/1:177:0,177:0:0:177:6272:-563.679,-53.2823,0
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chr03	24476759	.	C	T	26237.8	PASS	AB=0.486178;ABP=8.53294;AC=31;AF=0.164894;AN=188;AO=1633;CIGAR=1X;DP=11723;DPB=11723;DPRA=1.00863;EPP=3523.01;EPPR=21887.1;GTI=0;LEN=1;MEANALT=1.14634;MQM=59.3803;MQMR=53.6647;NS=94;NUMALT=1;ODDS=0.915753;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57539;QR=357394;RO=10078;RPL=4;RPP=3514.37;RPPR=21878.4;RPR=1629;RUN=1;SAF=1;SAP=3540.34;SAR=1632;SRF=1;SRP=21878.4;SRR=10077;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:24,12:24:860:12:424:-27.6449,0,-66.2283	0/0:227:227,0:227:8081:0:0:0,-68.3338,-721.673	0/1:243:116,127:116:4106:127:4497:-331.677,0,-293.331	0/0:254:253,0:253:9001:0:0:0,-76.1606,-807.818	0/0:126:126,0:126:4486:0:0:0,-37.9298,-401.551	0/0:76:76,0:76:2715:0:0:0,-22.8783,-242.52	0/0:184:184,0:184:6533:0:0:0,-55.3895,-586.242	0/0:201:201,0:201:7130:0:0:0,-60.507,-634.978	0/0:140:140,0:140:4980:0:0:0,-42.1442,-446.284	0/1:160:92,68:92:3239:68:2394:-167.546,0,-243.127	0/0:33:33,0:33:1158:0:0:0,-9.93399,-103.767	0/0:85:85,0:85:2979:0:0:0,-25.5875,-266.837	0/0:57:56,1:56:1935:1:36:0,-13.7711,-169.32	0/0:44:44,0:44:1572:0:0:0,-13.2453,-140.614	0/0:84:84,0:84:2957:0:0:0,-25.2865,-265.334	0/1:46:25,21:25:859:21:734:-52.5284,0,-63.3188	0/1:65:34,30:34:1192:30:1036:-73.9302,0,-87.2618	0/0:72:72,0:72:2541:0:0:0,-21.6742,-226.597	0/1:65:29,35:29:1031:35:1191:-87.8875,0,-73.2592	0/0:331:328,1:328:11655:1:36:0,-95.7972,-1040.84	0/0:272:272,0:272:9664:0:0:0,-81.8802,-863.562	0/0:123:123,0:123:4378:0:0:0,-37.0267,-393.046	0/0:89:89,0:89:3184:0:0:0,-26.7917,-285.415	0/1:168:106,62:106:3777:62:2182:-146.056,0,-288.265	0/0:97:97,0:97:3449:0:0:0,-29.1999,-307.964	0/1:382:174,208:174:6193:208:7320:-543.409,0,-441.182	0/0:381:381,0:381:13574:0:0:0,-114.692,-1213.3	0/1:21:8,13:8:288:13:460:-35.4091,0,-19.7784	0/0:303:303,0:303:10738:0:0:0,-91.2121,-962.301	0/0:85:85,0:85:3010:0:0:0,-25.5875,-269.204	0/0:109:109,0:109:3860:0:0:0,-32.8123,-346.004	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.3168	0/1:23:15,8:15:524:8:288:-19.3391,0,-40.228	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.3054	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.0731	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.6365	0/0:187:187,0:187:6565:0:0:0,-56.2926,-589.816	0/0:219:218,0:218:7768:0:0:0,-65.6245,-696.599	0/1:76:39,37:39:1379:37:1255:-89.521,0,-100.863	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6387	0/1:228:139,89:139:4960:89:3160:-215.955,0,-375.425	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.632	0/1:210:95,115:95:3348:115:4065:-302.722,0,-237.07	0/1:73:35,38:35:1205:38:1304:-95.6782,0,-86.4494	0/0:61:61,0:61:2133:0:0:0,-18.3628,-191.839	0/0:223:220,2:220:7790:2:72:0,-60.3469,-693.635	0/0:182:182,0:182:6459:0:0:0,-54.7875,-578.231	0/0:277:277,0:277:9810:0:0:0,-83.3853,-879.926	0/0:164:163,1:163:5797:1:36:0,-45.7716,-515.913	0/1:213:111,102:111:3935:102:3601:-259.447,0,-289.393	0/0:237:237,0:237:8391:0:0:0,-71.3441,-754.029	0/0:57:56,0:56:1990:0:0:0,-16.8577,-178.598	0/1:130:71,59:71:2527:59:2103:-150.373,0,-187.019	0/0:53:52,0:52:1837:0:0:0,-15.6536,-165.151	0/1:8:4,4:4:140:4:131:-9.70523,0,-10.2354	0/1:161:87,74:87:3080:74:2636:-188.649,0,-227.494	0/0:85:84,1:84:3004:1:36:0,-22.0848,-266.071	0/1:24:15,9:15:532:9:320:-21.9176,0,-40.9743	0/1:35:22,13:22:779:13:468:-31.9236,0,-59.7988	0/0:89:88,1:88:3144:1:36:0,-23.1934,-277.773	0/0:96:96,0:96:3398:0:0:0,-28.8989,-305.248	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.6748	0/0:160:160,0:160:5672:0:0:0,-48.1648,-509.736	0/0:309:309,0:309:10985:0:0:0,-93.0183,-984.359	0/0:253:253,0:253:9013:0:0:0,-76.1606,-808.276	0/0:131:129,0:129:4570:0:0:0,-38.8329,-409.152	0/0:222:216,5:216:7663:5:176:0,-50.6135,-671.675	0/1:139:36,103:36:1292:103:3634:-285.41,0,-74.6577	0/0:30:30,0:30:1076:0:0:0,-9.0309,-96.638	0/0:110:110,0:110:3875:0:0:0,-33.1133,-346.243	0/0:76:76,0:76:2658:0:0:0,-22.8783,-239.024	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.8063	0/1:98:62,36:62:2184:36:1270:-85.0498,0,-165.221	0/0:103:103,0:103:3680:0:0:0,-31.0061,-329.902	0/0:155:154,1:154:5443:1:36:0,-43.2052,-484.192	0/0:218:217,1:217:7721:1:36:0,-62.0263,-689.078	0/1:180:88,92:88:3144:92:3242:-237.61,0,-226.476	0/0:142:142,0:142:5060:0:0:0,-42.7463,-452.569	0/1:21:4,17:4:144:17:612:-49.0836,0,-6.95852	0/1:183:103,80:103:3664:80:2860:-202.099,0,-273.494	0/0:207:207,0:207:7335:0:0:0,-62.3132,-657.144	0/0:266:265,1:265:9438:1:36:0,-76.4757,-843.457	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.138	0/1:62:40,22:40:1436:22:766:-50.2752,0,-110.631	0/1:86:46,40:46:1603:40:1415:-101.752,0,-118.412	0/0:151:151,0:151:5246:0:0:0,-45.4555,-470.354	0/0:48:48,0:48:1665:0:0:0,-14.4494,-149.072	0/0:72:72,0:72:2531:0:0:0,-21.6742,-227.085	0/0:89:89,0:89:3148:0:0:0,-26.7917,-282.668	0/1:33:23,10:23:824:10:352:-22.0842,0,-64.1368	0/1:65:21,44:21:741:44:1521:-117.603,0,-47.0834	0/1:81:36,45:36:1256:45:1586:-118.638,0,-88.6737	0/0:63:63,0:63:2243:0:0:0,-18.9649,-200.668	0/0:86:86,0:86:3027:0:0:0,-25.8886,-272.154
chr03	24476780	.	G	A	28916.2	PASS	AB=0.500581;ABP=3.0204;AC=31;AF=0.164894;AN=188;AO=1735;CIGAR=1X;DP=11953;DPB=11953;DPRA=1.06601;EPP=3770.51;EPPR=22184.6;GTI=0;LEN=1;MEANALT=1;MQM=59.3435;MQMR=53.5883;NS=94;NUMALT=1;ODDS=5.34367;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61999;QR=365389;RO=10215;RPL=1735;RPP=3770.51;RPPR=22184.6;RPR=0;RUN=1;SAF=0;SAP=3770.51;SAR=1735;SRF=0;SRP=22184.6;SRR=10215;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:23,11:23:820:11:392:-25.3817,0,-62.5191	0/0:236:236,0:236:8442:0:0:0,-71.0431,-753.08	0/1:250:117,133:117:4183:133:4755:-352.58,0,-297.272	0/0:265:265,0:265:9470:0:0:0,-79.7729,-848.795	0/0:128:128,0:128:4577:0:0:0,-38.5318,-409.788	0/0:78:78,0:78:2769:0:0:0,-23.4803,-247.694	0/0:187:187,0:187:6701:0:0:0,-56.2926,-600.555	0/0:207:207,0:207:7375:0:0:0,-62.3132,-656.478	0/0:146:146,0:146:5223:0:0:0,-43.9504,-467.628	0/1:168:93,75:93:3328:75:2656:-188.687,0,-248.718	0/0:34:34,0:34:1224:0:0:0,-10.235,-109.694	0/0:84:84,0:84:3011:0:0:0,-25.2865,-269.696	0/0:58:58,0:58:2084:0:0:0,-17.4597,-185.523	0/0:44:44,0:44:1580:0:0:0,-13.2453,-141.273	0/0:83:83,0:83:2958:0:0:0,-24.9855,-265.376	0/1:46:24,22:24:851:22:773:-56.0375,0,-62.8292	0/1:69:36,33:36:1296:33:1168:-84.6389,0,-95.1028	0/0:72:72,0:72:2579:0:0:0,-21.6742,-230.365	0/1:67:31,36:31:1108:36:1296:-96.7586,0,-79.5046	0/0:332:331,0:331:11884:0:0:0,-99.6409,-1065	0/0:274:274,0:274:9809:0:0:0,-82.4822,-876.531	0/0:120:120,0:120:4295:0:0:0,-36.1236,-386.109	0/0:91:91,0:91:3272:0:0:0,-27.3937,-293.182	0/1:170:106,64:106:3777:64:2296:-155.71,0,-287.78	0/0:101:101,0:101:3612:0:0:0,-30.404,-322.002	0/1:396:176,220:176:6292:220:7900:-591.312,0,-445.898	0/0:385:384,0:384:13746:0:0:0,-115.596,-1227.82	0/1:22:8,14:8:288:14:500:-38.7089,0,-19.4774	0/0:310:310,0:310:11104:0:0:0,-93.3193,-993.923	0/0:85:84,0:84:2999:0:0:0,-25.2865,-267.761	0/0:111:111,0:111:3983:0:0:0,-33.4143,-357.065	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6545	0/1:26:15,11:15:536:11:381:-26.7891,0,-40.4018	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.5362	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.8421	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.5606	0/0:193:193,0:193:6906:0:0:0,-58.0988,-620.092	0/0:223:223,0:223:7997:0:0:0,-67.1297,-717.114	0/1:79:38,41:38:1360:41:1476:-108.496,0,-98.4256	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.0947	0/1:240:137,103:137:4920:103:3681:-259.183,0,-368.42	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.436	0/1:221:94,127:94:3364:127:4556:-343.357,0,-235.705	0/1:69:34,35:34:1220:35:1260:-92.9321,0,-88.9552	0/0:65:65,0:65:2303:0:0:0,-19.5669,-206.598	0/0:222:221,1:221:7899:1:36:0,-63.2304,-705.506	0/0:183:183,0:183:6568:0:0:0,-55.0885,-587.69	0/0:281:280,1:280:9952:1:36:0,-81.0867,-889.529	0/0:164:164,0:164:5880:0:0:0,-49.3689,-527.021	0/1:221:111,110:111:3975:110:3909:-285.396,0,-289.241	0/0:241:241,0:241:8623:0:0:0,-72.5482,-774.861	0/0:56:56,0:56:2012:0:0:0,-16.8577,-180.682	0/1:135:73,62:73:2624:62:2194:-157.051,0,-194.19	0/0:54:54,0:54:1935:0:0:0,-16.2556,-174.165	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.4302	0/1:159:87,72:87:3080:72:2569:-183.279,0,-228.091	0/0:82:82,0:82:2948:0:0:0,-24.6845,-264.498	0/1:24:15,9:15:532:9:324:-22.2811,0,-40.9752	0/1:35:21,14:21:752:14:504:-35.162,0,-57.341	0/0:88:87,1:87:3089:1:36:0,-22.8924,-272.921	0/0:97:97,0:97:3466:0:0:0,-29.1999,-311.334	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.0369	0/0:161:161,0:161:5755:0:0:0,-48.4658,-516.982	0/0:311:310,1:310:11047:1:36:0,-90.1176,-985.806	0/0:260:260,0:260:9284:0:0:0,-78.2678,-831.732	0/0:133:133,0:133:4768:0:0:0,-40.037,-425.502	0/0:221:216,5:216:7737:5:172:0,-50.7115,-677.758	0/1:150:39,111:39:1404:111:3945:-310.071,0,-81.3709	0/0:30:30,0:30:1080:0:0:0,-9.0309,-96.9956	0/0:110:110,0:110:3943:0:0:0,-33.1133,-352.028	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.405	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.4254	0/1:100:62,38:62:2228:38:1364:-92.9046,0,-168.722	0/0:106:106,0:106:3763:0:0:0,-31.9092,-337.168	0/0:151:151,0:151:5395:0:0:0,-45.4555,-483.128	0/0:220:219,1:219:7841:1:36:0,-62.6283,-700.387	0/1:192:88,104:88:3164:104:3713:-276.175,0,-224.79	0/0:145:144,1:144:5172:1:36:0,-40.0511,-458.772	0/1:21:4,17:4:144:17:608:-48.7222,0,-6.95852	0/1:183:103,80:103:3678:80:2876:-203.403,0,-274.918	0/0:212:212,0:212:7586:0:0:0,-63.8184,-679.339	0/0:272:271,1:271:9694:1:36:0,-78.2819,-866.295	0/0:74:73,1:73:2615:1:36:0,-18.8217,-231.647	0/1:63:41,22:41:1468:22:783:-51.5093,0,-113.121	0/1:90:48,42:48:1698:42:1508:-108.915,0,-125.579	0/0:149:149,0:149:5344:0:0:0,-44.8535,-479.053	0/0:49:49,0:49:1755:0:0:0,-14.7505,-157.143	0/0:74:74,0:74:2639:0:0:0,-22.2762,-236.561	0/0:91:91,0:91:3254:0:0:0,-27.3937,-291.814	0/1:34:22,12:22:773:12:424:-28.2614,0,-59.2509	0/1:68:21,47:21:756:47:1688:-131.725,0,-47.5314	0/1:85:38,47:38:1352:47:1680:-125.893,0,-94.8137	0/0:66:66,0:66:2347:0:0:0,-19.868,-209.931	0/0:88:88,0:88:3151:0:0:0,-26.4906,-282.794
chr03	24486179	.	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chr03	24486347	.	A	G	11988.3	PASS	AB=0.495238;ABP=3.29983;AC=29;AF=0.155914;AN=186;AO=737;CIGAR=1X;DP=4482;DPB=4482;DPRA=1.34738;EPP=1603.39;EPPR=8113.46;GTI=0;LEN=1;MEANALT=1.11765;MQM=59.5536;MQMR=59.8436;NS=93;NUMALT=1;ODDS=2.19795;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26309;QR=133879;RO=3735;RPL=737;RPP=1603.39;RPPR=8113.46;RPR=0;RUN=1;SAF=0;SAP=1603.39;SAR=737;SRF=0;SRP=8113.46;SRR=3735;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:4,3:4:144:3:108:-7.95952,0,-11.2064	0/0:41:40,0:40:1413:0:0:0,-12.0412,-127.105	0/1:289:133,156:133:4763:156:5566:-414,0,-341.72	0/0:142:142,0:142:5091:0:0:0,-42.7463,-458.332	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:41:40,0:40:1432:0:0:0,-12.0412,-128.959	0/1:29:21,8:21:756:8:284:-17.1735,0,-59.6374	0/0:14:14,0:14:500:0:0:0,-4.21442,-44.776	0/0:38:37,0:37:1328:0:0:0,-11.1381,-119.462	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8109	0/1:15:6,9:6:212:9:324:-24.9858,0,-14.9093	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.805	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.05	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.692	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/1:37:27,10:27:968:10:360:-21.6062,0,-76.2634	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.363	0/1:147:84,62:84:3012:62:2216:-155.48,0,-226.994	0/0:131:131,0:131:4690:0:0:0,-39.4349,-422.255	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:149:148,1:148:5301:1:36:0,-41.2552,-473.624	0/0:71:70,0:70:2516:0:0:0,-21.0721,-226.321	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.118	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	.:.:.:.:.:.:.:.	0/1:55:31,24:31:1082:24:864:-61.5213,0,-81.128	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:56:32,23:32:1148:23:817:-56.7466,0,-86.8002	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.156	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:109:109,0:109:3920:0:0:0,-32.8123,-352.616	0/1:63:38,25:38:1360:25:881:-60.6386,0,-103.448	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.585	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:128:59,69:59:2116:69:2476:-184.534,0,-152.17	0/0:44:43,0:43:1548:0:0:0,-12.9443,-139.331	0/0:3:2,0:2:72:0:0:0,-0.60206,-6.52352	0/1:78:41,37:41:1472:37:1320:-95.617,0,-109.296	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3958	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:13:9,4:9:320:4:140:-9.03119,0,-25.229	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.663	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.802	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:109:108,1:108:3865:1:36:0,-29.214,-344.254	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.44	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:86:82,3:82:2944:3:108:0,-15.7817,-255.147	0/1:164:40,124:40:1436:124:4408:-347.219,0,-80.1687	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0319	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:101:70,31:70:2520:31:1112:-69.9766,0,-196.638	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.989	0/0:69:69,0:69:2471:0:0:0,-20.7711,-222.615	0/0:83:83,0:83:2975:0:0:0,-24.9855,-267.982	0/1:28:9,19:9:324:19:680:-53.1003,0,-20.5816	0/0:47:44,3:44:1584:3:97:0,-5.0991,-133.802	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:69:37,32:37:1323:32:1144:-82.4938,0,-98.5472	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.6	0/0:145:145,0:145:5197:0:0:0,-43.6493,-467.849	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.1671	0/1:24:14,10:14:504:10:356:-25.1565,0,-38.4734	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:19:9,9:9:320:9:324:-23.7228,0,-23.3644	0/1:33:17,16:17:608:16:572:-41.8794,0,-45.118	0/1:25:6,19:6:216:19:676:-53.6399,0,-12.2648	0/0:98:97,1:97:3475:1:36:0,-25.9027,-309.352	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529
chr03	24486355	.	T	C	12153.3	PASS	AB=0.500341;ABP=3.01178;AC=29;AF=0.155914;AN=186;AO=742;CIGAR=1X;DP=4497;DPB=4497;DPRA=1.24091;EPP=1614.24;EPPR=8156.89;GTI=0;LEN=1;MEANALT=1;MQM=59.5539;MQMR=59.7909;NS=93;NUMALT=1;ODDS=2.15624;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26543;QR=133977;RO=3755;RPL=742;RPP=1614.24;RPPR=8156.89;RPR=0;RUN=1;SAF=0;SAP=1614.24;SAR=742;SRF=0;SRP=8156.89;SRR=3755;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:4,3:4:144:3:108:-7.95952,0,-11.2064	0/0:41:41,0:41:1449:0:0:0,-12.3422,-130.697	0/1:291:133,158:133:4734:158:5643:-420.314,0,-338.526	0/0:146:146,0:146:5233:0:0:0,-43.9504,-471.087	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.007	0/1:29:22,7:22:777:7:252:-14.2991,0,-61.5205	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3017	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5007	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1089	0/1:15:6,9:6:216:9:324:-24.9858,0,-15.2751	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.805	0/0:57:57,0:57:2021:0:0:0,-17.1587,-181.384	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.171	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.583	0/0:73:72,1:72:2588:1:36:0,-18.3769,-229.57	0/1:38:28,10:28:1000:10:360:-21.3052,0,-78.8404	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.363	0/1:145:86,59:86:3046:59:2105:-146.066,0,-230.502	0/0:133:133,0:133:4749:0:0:0,-40.037,-426.709	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:151:151,0:151:5377:0:0:0,-45.4555,-484.063	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.158	0/0:79:79,0:79:2771:0:0:0,-23.7814,-249.629	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.185	0/0:63:63,0:63:2253:0:0:0,-18.9649,-203.031	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	.:.:.:.:.:.:.:.	0/1:55:30,25:30:1076:25:892:-64.0384,0,-80.5962	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:56:33,23:33:1188:23:824:-57.1803,0,-90.0001	0/1:15:6,9:6:212:9:324:-24.9904,0,-14.9093	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.436	0/0:94:94,0:94:3338:0:0:0,-28.2968,-300.636	0/0:107:107,0:107:3776:0:0:0,-32.2102,-339.663	0/1:63:37,26:37:1313:26:936:-65.5922,0,-99.4751	0/0:58:58,0:58:2049:0:0:0,-17.4597,-184.68	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:126:57,69:57:2048:69:2468:-184.411,0,-146.655	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.5	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67662	0/1:77:38,39:38:1345:39:1400:-103.118,0,-98.1688	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6729	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:13:9,4:9:316:4:144:-9.40023,0,-24.8655	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:106:105,1:105:3742:1:36:0,-28.3109,-333.188	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.1	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:88:85,3:85:3033:3:108:0,-16.4155,-263.018	0/1:167:40,127:40:1436:127:4523:-356.301,0,-79.2657	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0319	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:101:70,31:70:2508:31:1108:-69.6184,0,-195.488	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.621	0/0:70:70,0:70:2505:0:0:0,-21.0721,-225.672	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/1:27:8,19:8:284:19:684:-53.7625,0,-17.7755	0/0:47:44,3:44:1580:3:108:0,-4.08168,-132.425	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:69:36,33:36:1292:33:1184:-86.0926,0,-95.7678	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.768	0/0:143:143,0:143:5106:0:0:0,-43.0473,-459.663	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1704	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:18:9,9:9:324:9:324:-24.0827,0,-24.0873	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/1:25:6,19:6:212:19:680:-54.0011,0,-11.899	0/0:96:95,1:95:3412:1:36:0,-25.3006,-302.058	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747
chr03	24486621	.	G	A	26006.6	PASS	AB=0.471594;ABP=25.956;AC=31;AF=0.164894;AN=188;AO=1563;CIGAR=1X;DP=12307;DPB=12307;DPRA=1.0964;EPP=3074.98;EPPR=21501;GTI=3;LEN=1;MEANALT=1;MQM=59.5701;MQMR=59.9406;NS=94;NUMALT=1;ODDS=8.22522;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54954;QR=383468;RO=10743;RPL=38;RPP=3074.98;RPPR=21501;RPR=1525;RUN=1;SAF=1563;SAP=3397.02;SAR=0;SRF=10743;SRP=23331.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:20,17:20:712:17:592:-42.4683,0,-53.2685	0/0:127:127,0:127:4539:0:0:0,-38.2308,-408.673	0/1:104:56,48:56:2016:48:1673:-119.538,0,-150.406	0/0:281:281,0:281:10026:0:0:0,-84.5894,-902.277	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.512	0/0:84:84,0:84:2989:0:0:0,-25.2865,-269.24	0/0:161:161,0:161:5742:0:0:0,-48.4658,-516.891	0/0:299:297,2:297:10609:2:72:0,-83.1712,-947.108	0/0:129:129,0:129:4605:0:0:0,-38.8329,-414.614	0/1:123:58,65:58:2076:65:2282:-168.609,0,-150.079	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:87:87,0:87:3092:0:0:0,-26.1896,-277.48	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:120:120,0:120:4278:0:0:0,-36.1236,-385.197	0/0:68:68,0:68:2433:0:0:0,-20.47,-219.217	0/1:64:37,27:37:1328:27:960:-67.4504,0,-100.556	0/1:68:41,27:41:1467:27:968:-66.9673,0,-111.855	0/0:80:80,0:80:2850:0:0:0,-24.0824,-256.737	0/1:44:19,25:19:684:25:880:-66.2679,0,-48.645	0/0:303:302,1:302:10803:1:36:0,-87.6138,-968.573	0/0:124:124,0:124:4390:0:0:0,-37.3277,-395.134	0/0:150:150,0:150:5336:0:0:0,-45.1545,-480.367	0/0:154:154,0:154:5490:0:0:0,-46.3586,-494.226	0/1:192:113,79:113:4052:79:2727:-187.858,0,-307.069	0/0:102:102,0:102:3606:0:0:0,-30.7051,-324.64	0/1:402:214,188:214:7659:188:6625:-475.056,0,-568.318	0/0:244:244,0:244:8699:0:0:0,-73.4513,-782.766	0/1:44:12,32:12:432:32:1140:-89.654,0,-25.9759	0/0:355:355,0:355:12615:0:0:0,-106.866,-1135.04	0/0:222:216,6:216:7718:6:212:0,-47.4072,-675.228	0/0:234:233,1:233:8352:1:36:0,-66.8427,-748.08	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:20:8,12:8:288:12:420:-32.1134,0,-20.2468	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:254:254,0:254:9044:0:0:0,-76.4616,-813.939	0/0:253:253,0:253:8991:0:0:0,-76.1606,-809.171	0/1:61:29,32:29:1044:32:1123:-83.0143,0,-75.912	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:214:135,79:135:4825:79:2812:-188.859,0,-369.983	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:268:152,116:152:5412:116:4092:-287.725,0,-406.534	0/1:100:57,43:57:2031:43:1528:-107.707,0,-152.873	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:178:178,0:178:6332:0:0:0,-53.5833,-569.965	0/0:126:126,0:126:4491:0:0:0,-37.9298,-404.36	0/0:330:329,0:329:11755:0:0:0,-99.0389,-1057.4	0/0:164:164,0:164:5865:0:0:0,-49.3689,-527.96	0/1:212:125,87:125:4430:87:3041:-210.085,0,-335.036	0/0:246:245,1:245:8742:1:32:0,-70.8541,-783.479	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:168:86,82:86:3076:82:2866:-207.559,0,-226.268	0/0:95:95,0:95:3370:0:0:0,-28.5978,-303.504	0/1:13:2,11:2:72:11:366:-29.3461,0,-2.92333	0/1:134:71,63:71:2532:63:2199:-157.83,0,-187.794	0/0:78:78,0:78:2761:0:0:0,-23.4803,-248.721	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:24:13,11:13:468:11:369:-26.3078,0,-35.2349	0/0:141:141,0:141:5048:0:0:0,-42.4452,-454.465	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.887	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:323:323,0:323:11553:0:0:0,-97.2327,-1039.57	0/0:346:344,2:344:12260:2:68:0,-97.6987,-1096.79	0/0:115:115,0:115:4105:0:0:0,-34.6184,-369.634	0/0:93:93,0:93:3312:0:0:0,-27.9958,-298.298	0/0:247:246,1:246:8762:1:32:0,-71.1551,-784.652	0/1:16:9,7:9:316:7:252:-18.1993,0,-23.9624	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:44:43,1:43:1531:1:36:0,-9.64704,-134.484	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.059	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:163:63,100:63:2247:100:3489:-265.14,0,-153.425	0/0:108:108,0:108:3849:0:0:0,-32.5112,-346.606	0/0:280:280,0:280:10013:0:0:0,-84.2884,-901.104	0/0:220:220,0:220:7896:0:0:0,-66.2266,-710.66	0/1:185:97,88:97:3446:88:3120:-225.126,0,-254.661	0/0:161:159,2:159:5691:2:72:0,-41.6291,-505.471	0/1:21:19,2:19:680:2:72:-0.515093,0,-55.2075	0/1:150:78,72:78:2792:72:2524:-182.029,0,-206.366	0/0:134:134,0:134:4788:0:0:0,-40.338,-431.073	0/0:335:334,1:334:11932:1:36:0,-97.2468,-1070.13	0/0:127:127,0:127:4529:0:0:0,-38.2308,-407.777	0/1:73:39,34:39:1396:34:1203:-86.36,0,-103.958	0/1:110:57,53:57:2044:53:1868:-135.281,0,-151.118	0/0:177:177,0:177:6279:0:0:0,-53.2823,-565.196	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:69:68,1:68:2429:1:36:0,-17.1728,-215.266	0/1:82:35,47:35:1239:47:1667:-125.002,0,-87.1292	0/1:88:48,40:48:1724:40:1412:-100.872,0,-128.955	0/1:84:30,54:30:1080:54:1912:-146.802,0,-72.2267	0/0:142:142,0:142:5040:0:0:0,-42.7463,-453.747	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695
chr03	24495456	.	C	T	494527	PASS	AB=0.493717;ABP=5.16588;AC=157;AF=0.835106;AN=188;AO=18431;CIGAR=1X;DP=21665;DPB=21665;DPRA=0;EPP=40025.4;EPPR=7019.04;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9173;MQMR=59.9985;NS=94;NUMALT=1;ODDS=6.57786;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=654691;QR=114714;RO=3231;RPL=13536;RPP=8799.99;RPPR=1742.93;RPR=4895;RUN=1;SAF=13536;SAP=8799.99;SAR=4895;SRF=2420;SRP=1742.93;SRR=811;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:100:53,47:53:1896:47:1645:-118.23,0,-140.815	1/1:327:2,325:2:72:325:11584:-1035.57,-91.6001,0	0/1:287:153,134:153:5431:134:4767:-342.765,0,-402.526	1/1:442:0,442:0:0:442:15736:-1415.94,-133.055,0	1/1:152:3,149:3:108:149:5298:-466.863,-35.6814,0	1/1:118:0,118:0:0:118:4177:-375.922,-35.5215,0	1/1:278:2,276:2:68:276:9791:-874.673,-77.2286,0	1/1:490:5,485:5:180:485:17201:-1531.19,-130.953,0	1/1:292:1,291:1:36:291:10288:-922.169,-84.3025,0	0/1:319:199,120:199:7023:120:4287:-289.979,0,-536.112	1/1:127:1,126:1:36:126:4477:-399.502,-34.6325,0	1/1:187:0,187:0:0:187:6652:-598.636,-56.2926,0	1/1:181:0,181:0:0:181:6432:-578.919,-54.4864,0	1/1:204:0,204:0:0:204:7217:-649.574,-61.4101,0	1/1:154:0,154:0:0:154:5427:-488.561,-46.3586,0	0/1:158:87,71:87:3112:71:2544:-181.646,0,-232.744	0/1:144:70,74:70:2495:74:2636:-194.138,0,-181.453	1/1:140:0,140:0:0:140:4959:-446.461,-42.1442,0	0/1:75:40,35:40:1420:35:1252:-90.4078,0,-105.52	1/1:319:0,319:0:0:319:11364:-1022.6,-96.0286,0	1/1:379:2,377:2:54:377:13385:-1199.22,-108.961,0	1/1:181:2,179:2:68:179:6337:-563.965,-48.0287,0	1/1:319:0,319:0:0:319:11352:-1021.55,-96.0286,0	0/1:305:113,192:113:4022:192:6780:-518.439,0,-270.355	1/1:256:1,255:1:36:255:9014:-807.581,-73.4654,0	0/1:796:380,416:380:13546:416:14791:-1090.94,0,-979.311	1/1:501:0,501:0:0:501:17878:-1608.61,-150.816,0	0/1:74:35,39:35:1248:39:1392:-103.303,0,-90.3486	1/1:452:0,452:0:0:452:16099:-1448.59,-136.066,0	1/1:281:19,262:19:665:262:9292:-775.996,-24.4166,0	1/1:289:1,287:1:36:287:10231:-917.158,-83.4132,0	0/1:20:10,10:10:360:10:356:-26.3606,0,-26.7237	0/1:28:6,22:6:216:22:792:-63.1768,0,-11.3617	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	1/1:429:0,429:0:0:429:15310:-1377.61,-129.142,0	1/1:477:1,476:1:36:476:16940:-1520.47,-139.993,0	0/1:133:76,57:76:2674:57:2040:-143.834,0,-200.867	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:262:133,129:133:4711:129:4590:-334.387,0,-345.282	1/1:68:0,68:0:0:68:2403:-216.525,-20.47,0	0/1:382:183,199:183:6477:199:7051:-519.663,0,-468.027	0/1:197:86,111:86:3045:111:3935:-295.04,0,-214.977	1/1:134:0,134:0:0:134:4788:-431.074,-40.338,0	1/1:317:0,317:0:0:317:11251:-1012.48,-95.4265,0	1/1:194:0,194:0:0:194:6889:-620.074,-58.3998,0	1/1:416:1,414:1:36:414:14678:-1316.38,-121.614,0	1/1:346:0,345:0:0:345:12228:-1100.11,-103.855,0	0/1:284:143,141:143:5103:141:4998:-364.475,0,-373.922	1/1:392:0,392:0:0:392:13883:-1249.23,-118.004,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:225:97,128:97:3423:128:4541:-341.129,0,-240.553	1/1:222:0,222:0:0:222:7887:-709.859,-66.8287,0	0/1:37:14,23:14:500:23:816:-62.6236,0,-34.1981	0/1:281:158,123:158:5593:123:4357:-307.717,0,-418.906	1/1:171:0,171:0:0:171:6049:-544.515,-51.4761,0	0/1:22:13,9:13:464:9:297:-20.4276,0,-35.4748	0/1:66:33,33:33:1171:33:1172:-85.9195,0,-85.8287	1/1:288:0,288:0:0:288:10233:-920.748,-86.6966,0	1/1:193:1,192:1:36:192:6794:-607.937,-54.5005,0	1/1:20:0,20:0:0:20:699:-63.2325,-6.0206,0	1/1:470:0,470:0:0:470:16792:-1510.9,-141.484,0	1/1:489:1,488:1:36:488:17357:-1558.12,-143.605,0	1/1:122:0,122:0:0:122:4312:-388.245,-36.7257,0	1/1:164:0,164:0:0:164:5810:-522.999,-49.3689,0	1/1:420:0,420:0:0:420:14943:-1344.05,-126.433,0	0/1:307:192,115:192:6776:115:4106:-277.307,0,-517.502	1/1:69:0,69:0:0:69:2464:-222.01,-20.7711,0	1/1:189:0,189:0:0:189:6676:-600.918,-56.8947,0	1/1:184:1,183:1:36:183:6510:-582.381,-51.7912,0	1/1:95:0,95:0:0:95:3368:-303.334,-28.5979,0	0/1:335:131,204:131:4645:204:7257:-552.335,0,-317.37	1/1:199:0,199:0:0:199:7037:-633.388,-59.905,0	1/1:488:0,488:0:0:488:17292:-1555.86,-146.903,0	1/1:320:0,320:0:0:320:11409:-1026.67,-96.3296,0	0/1:354:194,160:194:6862:160:5673:-404.119,0,-511.089	1/1:248:2,246:2:72:246:8718:-777.672,-67.8187,0	0/1:45:19,26:19:672:26:928:-70.2919,0,-47.2605	0/1:208:126,82:126:4516:82:2912:-199.702,0,-343.993	1/1:225:0,225:0:0:225:8003:-720.289,-67.7318,0	1/1:498:0,498:0:0:498:17630:-1586.33,-149.913,0	1/1:217:2,215:2:72:215:7672:-683.674,-58.4868,0	0/1:192:94,98:94:3380:98:3503:-257.678,0,-246.617	0/1:206:99,107:99:3501:107:3788:-279.101,0,-253.29	1/1:311:0,311:0:0:311:11032:-992.746,-93.6203,0	1/1:79:0,79:0:0:79:2811:-253.227,-23.7814,0	1/1:143:0,143:0:0:143:5069:-456.334,-43.0473,0	1/1:161:0,161:0:0:161:5743:-516.984,-48.4658,0	0/1:105:59,46:59:2107:46:1635:-115.83,0,-158.29	0/1:183:80,103:80:2846:103:3636:-272.333,0,-201.289	0/1:157:107,50:107:3796:50:1770:-112.314,0,-294.577	1/1:231:0,231:0:0:231:8203:-737.492,-69.5379,0	1/1:242:0,242:0:0:242:8596:-773.477,-72.8493,0
chr03	24495465	.	G	A	108508	PASS	AB=0.518257;ABP=7.92617;AC=156;AF=0.83871;AN=186;AO=4920;CIGAR=1X;DP=5745;DPB=5745;DPRA=0;EPP=10686.7;EPPR=1792.3;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.7787;MQMR=59.9927;NS=93;NUMALT=1;ODDS=1.18874;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175955;QR=29357;RO=824;RPL=2;RPP=10669.3;RPPR=1783.63;RPR=4918;RUN=1;SAF=2;SAP=10669.3;SAR=4918;SRF=1;SRP=1783.63;SRR=823;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:16,13:16:572:13:464:-33.3672,0,-43.0836	1/1:66:0,66:0:0:66:2351:-211.828,-19.868,0	0/1:113:50,63:50:1791:63:2245:-168.27,0,-127.455	1/1:99:0,99:0:0:99:3551:-319.79,-29.802,0	1/1:32:0,32:0:0:32:1148:-103.612,-9.63296,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:78:0,78:0:0:78:2765:-249.075,-23.4803,0	1/1:117:0,117:0:0:117:4196:-377.812,-35.2205,0	1/1:69:0,69:0:0:69:2469:-222.459,-20.7711,0	0/1:49:25,24:25:867:24:860:-62.9714,0,-63.5916	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:81:0,81:0:0:81:2882:-259.368,-24.3834,0	1/1:67:0,67:0:0:67:2396:-215.784,-20.169,0	1/1:28:0,28:0:0:28:992:-89.5898,-8.42884,0	1/1:59:1,58:1:36:58:2066:-182.604,-14.1625,0	0/1:92:48,44:48:1705:44:1580:-114.792,0,-126.039	0/1:23:9,14:9:324:14:496:-38.0472,0,-22.5822	1/1:24:0,24:0:0:24:864:-78.0792,-7.22472,0	0/1:28:13,15:13:464:15:527:-39.3313,0,-33.6687	1/1:101:0,101:0:0:101:3632:-326.99,-30.404,0	1/1:116:0,116:0:0:116:4153:-373.945,-34.9195,0	1/1:55:2,53:2:72:53:1866:-161.378,-9.71993,0	1/1:70:0,70:0:0:70:2512:-226.325,-21.0721,0	0/1:43:17,26:17:608:26:936:-71.5922,0,-42.1031	1/1:85:0,84:0:0:84:3000:-269.908,-25.2865,0	0/1:128:63,65:63:2255:65:2328:-171.159,0,-164.68	1/1:134:0,134:0:0:134:4816:-433.583,-40.338,0	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	1/1:135:0,135:0:0:135:4852:-436.827,-40.6391,0	1/1:73:1,72:1:36:72:2570:-227.792,-18.3769,0	1/1:44:0,44:0:0:44:1563:-140.956,-13.2453,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:124:0,124:0:0:124:4443:-400.037,-37.3277,0	1/1:66:0,66:0:0:66:2363:-212.736,-19.868,0	0/1:22:10,12:10:352:12:432:-32.5985,0,-25.3955	.:.:.:.:.:.:.:.	0/1:76:45,31:45:1596:31:1108:-77.1435,0,-121.049	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	0/1:89:36,53:36:1281:53:1895:-144.036,0,-88.7996	0/1:42:22,20:22:792:20:712:-51.7634,0,-58.9624	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:103:0,103:0:0:103:3700:-333.041,-31.0061,0	1/1:81:0,81:0:0:81:2900:-261.226,-24.3834,0	1/1:94:1,93:1:36:93:3317:-295.133,-24.6985,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:43:20,23:20:705:23:819:-61.0849,0,-50.8285	1/1:109:0,109:0:0:109:3907:-351.751,-32.8123,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:84:31,53:31:1112:53:1891:-145.18,0,-75.1048	1/1:42:0,42:0:0:42:1494:-134.752,-12.6433,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:85:38,47:38:1337:47:1675:-125.449,0,-95.0401	1/1:78:0,78:0:0:78:2791:-251.427,-23.4803,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:74:0,74:0:0:74:2649:-238.648,-22.2762,0	1/1:60:0,60:0:0:60:2144:-193.225,-18.0618,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:94:0,94:0:0:94:3356:-302.255,-28.2968,0	1/1:84:0,84:0:0:84:3009:-270.997,-25.2865,0	1/1:54:0,54:0:0:54:1944:-175.222,-16.2556,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:111:0,111:0:0:111:3942:-354.817,-33.4143,0	0/1:112:67,45:67:2395:45:1606:-111.103,0,-182.091	1/1:23:0,23:0:0:23:828:-74.8395,-6.92369,0	1/1:70:0,70:0:0:70:2512:-226.322,-21.0721,0	1/1:32:1,31:1:36:31:1116:-97.1525,-6.03469,0	1/1:16:0,16:0:0:16:576:-52.1726,-4.81648,0	0/1:135:54,81:54:1925:81:2892:-219.872,0,-132.886	1/1:88:0,88:0:0:88:3143:-283.085,-26.4906,0	1/1:93:0,93:0:0:93:3309:-298.024,-27.9958,0	1/1:99:0,99:0:0:99:3560:-320.597,-29.802,0	0/1:48:27,21:27:953:21:756:-53.9077,0,-71.6339	1/1:50:0,50:0:0:50:1792:-161.561,-15.0515,0	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/1:68:33,35:33:1176:35:1260:-93.2354,0,-85.6777	1/1:51:0,51:0:0:51:1821:-164.17,-15.3525,0	1/1:148:0,148:0:0:148:5312:-478.201,-44.5524,0	1/1:31:0,31:0:0:31:1116:-100.747,-9.33193,0	0/1:82:41,41:41:1453:41:1476:-108.447,0,-106.379	0/1:47:26,21:26:919:21:756:-54.2118,0,-68.8778	1/1:79:0,79:0:0:79:2799:-252.131,-23.7814,0	1/1:24:0,24:0:0:24:860:-77.7185,-7.22472,0	1/1:32:0,32:0:0:32:1120:-101.102,-9.63296,0	1/1:64:0,64:0:0:64:2288:-206.178,-19.2659,0	0/1:42:25,17:25:891:17:608:-42.4088,0,-67.8655	0/1:70:26,44:26:936:44:1566:-120.14,0,-63.4874	0/1:67:44,23:44:1584:23:805:-52.5955,0,-122.683	1/1:62:0,62:0:0:62:2206:-198.716,-18.6639,0	1/1:80:0,80:0:0:80:2863:-257.893,-24.0824,0
chr03	24505101	.	CTTTAT	CTTTAC,CTTAC	328316	PASS	AB=0.503463,0.489372;ABP=3.44646,7.11831;AC=157,31;AF=0.835106,0.164894;AN=188;AO=12650,2060;CIGAR=5M1X,1M1D3M1X;DP=14775;DPB=14430.2;DPRA=0,0.886618;EPP=27203.5,4467.56;EPPR=13.8677;GTI=0;LEN=1,5;MEANALT=1.96809,2.56098;MQM=59.9636,58.5932;MQMR=60;NS=94;NUMALT=2;ODDS=1.43925;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=54,54;PQR=0;PRO=0;QA=452317,73068;QR=175;RO=5;RPL=31,1;RPP=27203.5,4467.56;RPPR=13.8677;RPR=12619,2059;RUN=1,1;SAF=12650,2060;SAP=27472.1,4476.24;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:108:0,57,50:0:0:57,50:2014,1763:-307.523,-143.505,-126.346,-164.05,0,-148.998	1/1:235:0,234,0:0:0:234,0:8396,0:-755.272,-70.441,0,-755.272,-70.441,-755.272	1/2:227:0,120,106:0:0:120,106:4264,3760:-653.18,-305.775,-269.652,-347.402,0,-315.493	1/1:404:0,403,0:0:0:403,0:14405,0:-1295.88,-121.315,0,-1295.88,-121.315,-1295.88	1/1:125:0,124,0:0:0:124,0:4443,0:-399.68,-37.3277,0,-399.68,-37.3277,-399.68	1/1:97:0,97,0:0:0:97,0:3455,0:-311.163,-29.1999,0,-311.163,-29.1999,-311.163	1/1:356:0,356,0:0:0:356,0:12665,0:-1139.68,-107.167,0,-1139.68,-107.167,-1139.68	1/1:241:0,241,0:0:0:241,0:8609,0:-774.796,-72.5482,0,-774.796,-72.5482,-774.796	1/1:211:0,208,2:0:0:208,2:7439,65:-669.267,-62.6142,0,-664.025,-57.296,-663.423	1/2:199:0,97,101:0:0:97,101:3472,3556:-572.563,-289.426,-260.226,-283.132,0,-252.728	1/1:124:0,124,0:0:0:124,0:4456,0:-401.209,-37.3277,0,-401.209,-37.3277,-401.209	1/1:108:0,108,0:0:0:108,0:3872,0:-348.673,-32.5112,0,-348.673,-32.5112,-348.673	1/1:97:0,97,0:0:0:97,0:3480,0:-313.411,-29.1999,0,-313.411,-29.1999,-313.411	1/1:161:0,161,0:0:0:161,0:5724,0:-515.278,-48.4658,0,-515.278,-48.4658,-515.278	1/1:109:0,108,0:0:0:108,0:3880,0:-349.029,-32.5112,0,-349.029,-32.5112,-349.029	1/2:96:0,48,46:0:0:48,46:1716,1632:-272.807,-132.887,-118.437,-139.94,0,-126.093	1/2:151:0,87,63:0:0:87,63:3115,2252:-437.44,-183.411,-157.221,-254.034,0,-235.069	1/1:98:0,98,0:0:0:98,0:3524,0:-317.368,-29.5009,0,-317.368,-29.5009,-317.368	1/2:59:0,29,29:0:0:29,29:1044,1037:-169.636,-84.4497,-75.7198,-85.1926,0,-76.4627	1/1:355:0,354,0:0:0:354,0:12669,0:-1139.67,-106.565,0,-1139.67,-106.565,-1139.67	1/1:244:0,242,0:0:0:242,0:8644,0:-777.637,-72.8493,0,-777.637,-72.8493,-777.637	1/1:131:0,131,0:0:0:131,0:4695,0:-422.709,-39.4349,0,-422.709,-39.4349,-422.709	1/1:178:0,177,1:0:0:177,1:6302,26:-567.013,-53.2823,0,-564.974,-50.9835,-564.673	1/2:196:0,107,89:0:0:107,89:3829,3181:-571.796,-259.567,-227.357,-312.587,0,-285.795	1/1:153:0,152,0:0:0:152,0:5420,0:-487.592,-45.7566,0,-487.592,-45.7566,-487.592	1/2:408:1,216,190:1:36:216,190:7736,6693:-1172.49,-541.897,-479.812,-627.953,0,-573.695	1/1:354:0,353,0:0:0:353,0:12591,0:-1132.72,-106.264,0,-1132.72,-106.264,-1132.72	1/2:47:0,20,27:0:0:20,27:710,970:-137.333,-79.4842,-73.4636,-58.2056,0,-50.0778	1/1:434:0,427,0:0:0:427,0:15300,0:-1376.37,-128.54,0,-1376.37,-128.54,-1376.37	1/1:183:1,181,1:1:36:181,1:6439,36:-575.996,-51.549,0,-573.36,-51.549,-575.996	1/1:227:0,226,0:0:0:226,0:8050,0:-724.16,-68.0328,0,-724.16,-68.0328,-724.16	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/2:26:0,9,17:0:0:9,17:324,603:-75.9211,-49.4825,-46.7733,-26.7966,0,-21.6791	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:18:0,18,0:0:0:18,0:633,0:-57.2951,-5.41854,0,-57.2951,-5.41854,-57.2951	1/1:20:0,20,0:0:0:20,0:707,0:-63.9546,-6.0206,0,-63.9546,-6.0206,-63.9546	1/1:223:0,222,0:0:0:222,0:7946,0:-714.312,-66.8287,0,-714.312,-66.8287,-714.312	1/1:190:0,190,0:0:0:190,0:6814,0:-613.324,-57.1957,0,-613.324,-57.1957,-613.324	1/2:104:0,51,53:0:0:51,53:1832,1893:-304.065,-154.615,-139.262,-149.808,0,-133.854	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:218:0,106,112:0:0:106,112:3785,3998:-634.809,-326.245,-294.336,-308.921,0,-275.205	1/1:62:0,60,1:0:0:60,1:2151,36:-193.502,-18.0618,0,-190.564,-15.1194,-190.263	1/2:203:0,112,89:0:0:112,89:3979,3163:-581.897,-257.67,-223.955,-324.271,0,-297.479	1/2:112:0,55,56:0:0:55,56:1968,1985:-322.116,-161.662,-145.105,-160.463,0,-143.605	1/1:80:0,80,0:0:0:80,0:2872,0:-258.714,-24.0824,0,-258.714,-24.0824,-258.714	1/1:159:0,159,0:0:0:159,0:5686,0:-511.859,-47.8638,0,-511.859,-47.8638,-511.859	1/1:204:0,203,1:0:0:203,1:7272,36:-654.172,-61.1091,0,-651.236,-57.8136,-650.935	1/1:228:0,228,0:0:0:228,0:8129,0:-731.621,-68.6348,0,-731.621,-68.6348,-731.621	1/1:173:0,172,0:0:0:172,0:6128,0:-551.418,-51.7772,0,-551.418,-51.7772,-551.418	1/2:233:0,131,102:0:0:131,102:4708,3601:-677.614,-293.527,-254.092,-384.443,0,-353.738	1/1:211:0,211,0:0:0:211,0:7543,0:-678.908,-63.5173,0,-678.908,-63.5173,-678.908	1/1:10:0,10,0:0:0:10,0:359,0:-32.6536,-3.0103,0,-32.6536,-3.0103,-32.6536	1/2:184:0,91,92:0:0:91,92:3241,3276:-530.909,-266.747,-239.353,-264.238,0,-236.543	1/1:100:0,99,0:0:0:99,0:3539,0:-318.351,-29.802,0,-318.351,-29.802,-318.351	1/2:19:0,6,13:0:0:6,13:216,468:-56.1488,-38.5243,-36.7181,-17.9843,0,-14.0709	1/2:266:0,139,120:0:0:139,120:4964,423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chr03	24534119	.	T	C	17401.4	PASS	AB=0.539708;ABP=28.3606;AC=32;AF=0.170213;AN=188;AO=1020;CIGAR=1X;DP=6304;DPB=6304;DPRA=0.949153;EPP=2183.3;EPPR=11347.1;GTI=2;LEN=1;MEANALT=1.05128;MQM=59.8686;MQMR=59.9875;NS=94;NUMALT=1;ODDS=0.191287;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36397;QR=184171;RO=5280;RPL=1016;RPP=2183.3;RPPR=11355.7;RPR=4;RUN=1;SAF=0;SAP=2217.91;SAR=1020;SRF=1;SRP=11459.7;SRR=5279;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:29,25:29:1021:25:885:-63.7109,0,-75.9446	0/0:66:66,0:66:2237:0:0:0,-19.868,-201.581	0/1:138:80,58:80:2830:58:2070:-145.027,0,-213.395	0/0:136:136,0:136:4747:0:0:0,-40.9401,-427.389	0/0:26:26,0:26:891:0:0:0,-7.82678,-80.4967	0/0:34:34,0:34:1194:0:0:0,-10.235,-107.761	0/0:90:90,0:90:3156:0:0:0,-27.0927,-284.262	0/0:79:79,0:79:2776:0:0:0,-23.7814,-250.068	0/0:110:110,0:110:3876:0:0:0,-33.1133,-349.033	0/1:64:33,31:33:1150:31:1116:-81.4834,0,-84.536	0/0:43:43,0:43:1514:0:0:0,-12.9443,-136.549	0/0:123:122,0:122:4334:0:0:0,-36.7257,-389.875	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.538	0/0:46:45,1:45:1597:1:36:0,-10.2491,-140.42	0/0:82:82,0:82:2875:0:0:0,-24.6845,-258.985	0/1:70:37,33:37:1297:33:1169:-84.4432,0,-95.957	0/1:20:17,3:17:597:3:108:-4.05457,0,-48.0355	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/1:45:12,33:12:432:33:1156:-90.7954,0,-25.6748	0/0:103:103,0:103:3531:0:0:0,-31.0061,-317.992	0/0:124:124,0:124:4358:0:0:0,-37.3277,-392.392	0/0:41:41,0:41:1430:0:0:0,-12.3422,-128.992	0/0:95:95,0:95:3295:0:0:0,-28.5978,-296.764	0/1:51:28,23:28:974:23:828:-59.4916,0,-72.6156	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.007	0/1:104:40,64:40:1342:64:2244:-170.891,0,-89.757	0/0:207:207,0:207:7244:0:0:0,-62.3132,-652.013	0/1:24:13,10:13:438:10:360:-25.4608,0,-32.4577	0/0:133:130,3:130:4461:3:108:0,-29.9618,-391.581	0/0:67:64,3:64:2206:3:108:0,-10.0938,-188.721	0/0:77:77,0:77:2700:0:0:0,-23.1793,-243.24	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:163:163,0:163:5649:0:0:0,-49.0679,-508.525	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/1:45:19,26:19:654:26:932:-70.6443,0,-45.6303	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:101:46,55:46:1516:55:1957:-146,0,-106.311	0/0:38:38,0:38:1322:0:0:0,-11.4391,-119.275	0/1:95:49,46:49:1677:46:1637:-118.99,0,-122.608	0/1:69:28,41:28:981:41:1476:-112.365,0,-67.83	0/0:48:48,0:48:1679:0:0:0,-14.4494,-150.613	0/0:71:71,0:71:2428:0:0:0,-21.3731,-218.765	0/0:77:77,0:77:2655:0:0:0,-23.1793,-239.188	0/0:77:77,0:77:2726:0:0:0,-23.1793,-245.581	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.401	0/1:53:23,30:23:813:30:1080:-81.5587,0,-57.5345	0/0:74:74,0:74:2462:0:0:0,-22.2762,-221.822	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:80:38,41:38:1300:41:1461:-107.635,0,-93.1501	0/0:45:45,0:45:1560:0:0:0,-13.5463,-140.683	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:76:34,42:34:1175:42:1497:-112.14,0,-83.1698	0/0:55:53,2:53:1855:2:72:0,-9.71993,-160.387	0/1:13:5,8:5:165:8:284:-21.99,0,-11.2602	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/0:67:67,0:67:2307:0:0:0,-20.169,-207.881	0/0:77:76,1:76:2712:1:36:0,-19.581,-240.726	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:76:76,0:76:2580:0:0:0,-22.8783,-232.439	0/0:79:79,0:79:2779:0:0:0,-23.7814,-250.348	0/0:43:43,0:43:1472:0:0:0,-12.9443,-132.765	0/0:57:57,0:57:2012:0:0:0,-17.1587,-181.351	0/0:123:122,1:122:4191:1:36:0,-33.4284,-373.773	0/1:114:40,74:40:1376:74:2641:-203.618,0,-89.8113	0/0:33:33,0:33:1146:0:0:0,-9.93399,-103.442	0/0:76:76,0:76:2648:0:0:0,-22.8783,-238.563	0/0:39:39,0:39:1347:0:0:0,-11.7402,-121.522	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:85:46,39:46:1620:39:1388:-99.6314,0,-120.499	0/0:76:76,0:76:2682:0:0:0,-22.8783,-241.623	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.062	0/0:136:136,0:136:4602:0:0:0,-40.9401,-414.34	0/1:43:22,21:22:765:21:752:-54.2774,0,-56.2234	0/0:61:60,1:60:2114:1:36:0,-14.7646,-186.927	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:73:33,40:33:1135:40:1430:-107.022,0,-80.4737	0/0:85:85,0:85:3030:0:0:0,-25.5875,-272.927	0/0:154:153,0:153:5279:0:0:0,-46.0576,-474.886	0/0:52:52,0:52:1833:0:0:0,-15.6536,-165.248	0/1:88:37,51:37:1301:51:1832:-138.67,0,-90.8849	0/1:53:30,23:30:1080:23:813:-57.5345,0,-81.5587	0/0:116:114,2:114:4042:2:72:0,-28.0828,-357.131	0/0:22:22,0:22:762:0:0:0,-6.62266,-68.8951	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.392	0/0:81:81,0:81:2863:0:0:0,-24.3834,-257.904	0/1:47:17,30:17:604:30:1080:-83.3472,0,-40.5422	0/1:76:35,41:35:1214:41:1476:-110.258,0,-86.6808	0/1:146:48,98:48:1675:98:3505:-271.708,0,-107.08	0/0:70:70,0:70:2451:0:0:0,-21.0721,-220.841	0/0:106:106,0:106:3724:0:0:0,-31.9092,-335.36
chr03	24534221	.	C	T	14536.9	PASS	AB=0.472017;ABP=15.8924;AC=32;AF=0.172043;AN=186;AO=904;CIGAR=1X;DP=6286;DPB=6286;DPRA=0.898866;EPP=1966.02;EPPR=11620.5;GTI=2;LEN=1;MEANALT=1.05882;MQM=59.9723;MQMR=59.9974;NS=93;NUMALT=1;ODDS=2.6323;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32226;QR=191212;RO=5378;RPL=904;RPP=1966.02;RPPR=11620.5;RPR=0;RUN=1;SAF=0;SAP=1966.02;SAR=904;SRF=0;SRP=11681.2;SRR=5378;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:20,17:20:720:17:600:-43.1911,0,-53.9907	0/0:57:57,0:57:2027:0:0:0,-17.1587,-182.702	0/1:100:60,40:60:2119:40:1424:-98.3545,0,-160.876	0/0:142:142,0:142:5063:0:0:0,-42.7463,-455.817	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:75:74,1:74:2639:1:36:0,-18.979,-234.158	0/0:112:112,0:112:3965:0:0:0,-33.7154,-357.043	0/0:103:101,1:101:3579:1:36:0,-27.4666,-318.722	0/1:66:39,27:39:1367:27:946:-65.5855,0,-103.46	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.57	0/0:105:105,0:105:3714:0:0:0,-31.6081,-334.464	0/0:97:97,0:97:3459:0:0:0,-29.1999,-311.523	0/0:61:61,0:61:2161:0:0:0,-18.3628,-194.755	0/0:84:84,0:84:2995:0:0:0,-25.2865,-269.782	0/1:69:38,31:38:1334:31:1104:-78.8996,0,-99.5873	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2127	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:55:31,24:31:1090:24:864:-61.5259,0,-81.8513	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.636	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.082	0/0:30:30,0:30:1071:0:0:0,-9.0309,-96.7016	0/0:112:112,0:112:3971:0:0:0,-33.7154,-357.584	0/1:33:20,13:20:704:13:460:-31.8014,0,-53.7505	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:123:79,44:79:2811:44:1564:-104.023,0,-216.203	0/0:182:182,0:182:6494:0:0:0,-54.7875,-584.546	0/1:35:17,18:17:608:18:636:-47.032,0,-44.516	0/0:113:113,0:113:4022:0:0:0,-34.0164,-362.17	0/0:69:65,4:65:2319:4:144:0,-7.45745,-195.656	0/0:77:77,0:77:2727:0:0:0,-23.1793,-245.672	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:170:170,0:170:6055:0:0:0,-51.1751,-545.057	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.623	0/1:75:36,39:36:1279:39:1377:-101.65,0,-92.8352	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:85:42,43:42:1483:43:1540:-113.306,0,-108.176	0/0:46:46,0:46:1618:0:0:0,-13.8474,-145.908	0/1:103:66,36:66:2337:36:1283:-84.7087,0,-179.524	0/1:82:38,44:38:1339:44:1572:-117.087,0,-96.1248	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.372	0/0:114:114,0:114:4060:0:0:0,-34.3174,-365.587	0/0:57:56,0:56:1996:0:0:0,-16.8577,-179.554	0/1:60:37,23:37:1323:23:820:-56.0607,0,-101.31	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.225	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:58:40,18:40:1432:18:644:-40.8309,0,-111.718	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:98:37,61:37:1307:61:2176:-166.606,0,-88.4298	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/0:100:100,0:100:3572:0:0:0,-30.103,-321.688	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:122:122,0:122:4320:0:0:0,-36.7257,-388.979	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/0:51:50,0:50:1796:0:0:0,-15.0515,-161.563	0/0:47:47,0:47:1664:0:0:0,-14.1484,-150.047	0/0:96:96,0:96:3399:0:0:0,-28.8989,-306.127	0/1:114:51,63:51:1832:63:2243:-167.816,0,-130.843	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:67:36,31:36:1262:31:1108:-79.862,0,-93.712	0/0:79:79,0:79:2792:0:0:0,-23.7814,-251.52	0/0:150:150,0:150:5284:0:0:0,-45.1545,-475.698	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/1:66:26,40:26:915:40:1413:-107.597,0,-62.7976	0/0:99:99,0:99:3509:0:0:0,-29.802,-316.021	0/1:12:6,6:6:208:6:216:-16.1782,0,-15.4467	0/1:89:51,38:51:1823:38:1360:-95.9089,0,-137.559	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.341	0/0:118:118,0:118:4203:0:0:0,-35.5215,-378.453	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/1:81:47,34:47:1667:34:1212:-85.0029,0,-125.933	0/1:43:23,20:23:820:20:720:-52.1845,0,-61.1782	0/0:102:102,0:102:3600:0:0:0,-30.7051,-324.208	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.918	0/1:68:41,27:41:1468:27:972:-67.3279,0,-111.946	0/1:121:51,70:51:1816:70:2492:-188.104,0,-127.297	0/1:77:24,53:24:843:53:1900:-148.099,0,-53.0087	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/0:114:114,0:114:4058:0:0:0,-34.3174,-365.408
chr03	24543358	.	T	C	94282	PASS	AB=0.678295;ABP=74.2481;AC=171;AF=0.919355;AN=186;AO=4229;CIGAR=1X;DP=4327;DPB=4327;DPRA=0;EPP=9186.17;EPPR=213.643;GTI=8;LEN=1;MEANALT=1.01075;MQM=50.2015;MQMR=54.1546;NS=93;NUMALT=1;ODDS=0.256759;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150022;QR=3467;RO=97;RPL=0;RPP=9186.17;RPPR=213.643;RPR=4229;RUN=1;SAF=0;SAP=9186.17;SAR=4229;SRF=0;SRP=213.643;SRR=97;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:3,15:3:108:15:536:-42.7495,0,-4.64711	1/1:34:0,34:0:0:34:1192:-105.611,-10.235,0	1/1:32:2,30:2:72:30:1059:-87.3454,-2.80593,0	1/1:96:0,96:0:0:96:3423:-307.701,-28.8989,0	1/1:21:0,21:0:0:21:752:-67.0873,-6.32163,0	1/1:19:0,19:0:0:19:684:-61.2907,-5.71957,0	1/1:26:0,26:0:0:26:932:-83.9206,-7.82678,0	1/1:40:0,40:0:0:40:1436:-128.076,-12.0412,0	1/1:54:0,54:0:0:54:1922:-171.904,-16.2556,0	0/1:24:3,21:3:108:21:752:-60.5339,0,-2.8492	1/1:19:0,19:0:0:19:671:-60.6348,-5.71957,0	1/1:60:0,60:0:0:60:2105:-186.644,-18.0618,0	1/1:50:0,50:0:0:50:1772:-157.978,-15.0515,0	1/1:25:0,25:0:0:25:848:-75.6105,-7.52575,0	1/1:41:0,41:0:0:41:1452:-130.269,-12.3422,0	0/1:23:5,18:5:176:18:627:-49.0966,0,-9.19965	0/1:7:3,4:3:108:4:140:-10.7759,0,-7.95367	1/1:10:0,10:0:0:10:356:-32.2143,-3.0103,0	0/1:11:2,9:2:72:9:324:-25.7688,0,-3.51808	1/1:57:0,57:0:0:57:2033:-181.587,-17.1587,0	1/1:125:0,125:0:0:125:4447:-392.784,-37.6288,0	1/1:62:0,62:0:0:62:2202:-197.841,-18.6639,0	1/1:44:0,44:0:0:44:1563:-140.752,-13.2453,0	1/1:23:0,22:0:0:22:773:-68.1466,-6.62266,0	1/1:39:0,39:0:0:39:1387:-123.449,-11.7402,0	1/1:60:4,56:4:144:56:1977:-164.368,-4.74818,0	1/1:119:0,119:0:0:119:4236:-375.231,-35.8226,0	0/1:13:7,6:7:252:6:197:-13.9351,0,-18.7724	1/1:114:1,113:1:36:113:3999:-354.918,-30.7196,0	1/1:30:0,30:0:0:30:1067:-95.0581,-9.0309,0	1/1:16:0,16:0:0:16:572:-51.613,-4.81648,0	1/1:4:0,4:0:0:4:144:-13.1295,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.0425,-1.20412,0	1/1:166:1,165:1:36:165:5903:-523.244,-46.3922,0	1/1:70:0,70:0:0:70:2494:-223.035,-21.0721,0	1/1:342:0,342:0:0:342:12126:-1081.02,-102.952,0	1/1:95:0,95:0:0:95:3336:-299.69,-28.5979,0	1/1:51:1,50:1:36:50:1773:-152.92,-11.7543,0	0/1:18:5,13:5:180:13:455:-35.3924,0,-11.1101	1/1:46:0,46:0:0:46:1610:-141.689,-13.8474,0	1/1:14:1,13:1:36:13:468:-38.4192,-0.733725,0	1/1:65:1,64:1:32:64:2271:-197.188,-16.3676,0	1/1:12:0,12:0:0:12:428:-38.0889,-3.61236,0	0/1:19:5,14:5:180:14:504:-39.8179,0,-10.6986	1/1:30:0,30:0:0:30:1038:-93.4283,-9.0309,0	1/1:54:0,54:0:0:54:1931:-173.851,-16.2556,0	1/1:37:0,37:0:0:37:1323:-117.454,-11.1381,0	1/1:85:0,85:0:0:85:3015:-268.399,-25.5876,0	1/1:88:0,88:0:0:88:3112:-279.369,-26.4906,0	1/1:17:0,17:0:0:17:612:-55.2092,-5.11751,0	1/1:98:0,98:0:0:98:3491:-313.649,-29.5009,0	1/1:96:1,95:1:36:95:3385:-300.255,-25.3006,0	0/1:5:1,4:1:36:4:144:-11.7363,0,-2.08802	1/1:8:0,8:0:0:8:284:-25.8291,-2.40824,0	.:.:.:.:.:.:.:.	0/1:12:2,10:2:72:10:360:-28.6541,0,-3.19543	1/1:41:0,41:0:0:41:1457:-131.064,-12.3422,0	1/1:3:0,3:0:0:3:108:-9.42118,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	1/1:29:0,29:0:0:29:1036:-89.68,-8.72987,0	1/1:61:0,61:0:0:61:2104:-188.831,-18.3628,0	1/1:85:0,85:0:0:85:3039:-273.217,-25.5876,0	1/1:64:0,64:0:0:64:2296:-206.181,-19.2659,0	1/1:62:0,62:0:0:62:2211:-198.975,-18.6639,0	1/1:29:0,29:0:0:29:1028:-91.3301,-8.72987,0	1/1:30:0,30:0:0:30:1080:-97.2331,-9.0309,0	1/1:47:0,47:0:0:47:1616:-144.396,-14.1484,0	0/1:27:9,18:9:324:18:633:-49.0351,0,-21.3748	1/1:84:0,84:0:0:84:2979:-263.075,-25.2865,0	1/1:51:1,50:1:36:50:1788:-156.24,-11.7543,0	1/1:32:0,32:0:0:32:1126:-101.551,-9.63296,0	1/1:163:0,163:0:0:163:5771:-516.502,-49.0679,0	1/1:35:1,34:1:36:34:1216:-105.449,-6.94288,0	1/1:67:0,67:0:0:67:2391:-214.305,-20.169,0	1/1:37:0,37:0:0:37:1312:-116.233,-11.1381,0	1/1:58:0,58:0:0:58:2057:-184.806,-17.4597,0	1/1:12:0,12:0:0:12:428:-38.6459,-3.61236,0	1/1:35:0,35:0:0:35:1243:-111.589,-10.5361,0	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	1/1:3:0,3:0:0:3:108:-9.93584,-0.90309,0	1/1:24:0,24:0:0:24:856:-76.878,-7.22472,0	1/1:107:0,107:0:0:107:3785:-340.007,-32.2102,0	1/1:42:0,42:0:0:42:1484:-133.599,-12.6433,0	1/1:35:0,35:0:0:35:1247:-112.304,-10.5361,0	0/1:6:2,4:2:72:4:144:-11.4886,0,-5.0297	1/1:56:0,56:0:0:56:1986:-178.464,-16.8577,0	1/1:12:0,12:0:0:12:432:-38.7545,-3.61236,0	1/1:40:0,40:0:0:40:1412:-126.417,-12.0412,0	1/1:30:0,30:0:0:30:1068:-95.8968,-9.0309,0	0/1:11:6,5:6:216:5:176:-12.6464,0,-15.8433	0/1:37:16,21:16:563:21:752:-55.5022,0,-39.6744	0/1:27:14,13:14:500:13:460:-33.5529,0,-37.183	1/1:41:0,41:0:0:41:1454:-130.587,-12.3422,0	1/1:53:0,53:0:0:53:1844:-165.902,-15.9546,0
chr03	24543367	.	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chr03	24543373	.	T	C	95256.9	PASS	AB=0.70979;ABP=112.343;AC=170;AF=0.913978;AN=186;AO=4195;CIGAR=1X;DP=4287;DPB=4287;DPRA=0;EPP=8973.89;EPPR=154.069;GTI=9;LEN=1;MEANALT=1;MQM=50.2439;MQMR=54.087;NS=93;NUMALT=1;ODDS=1.56393;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149805;QR=3285;RO=92;RPL=16;RPP=8973.89;RPPR=154.069;RPR=4179;RUN=1;SAF=0;SAP=9112.34;SAR=4195;SRF=0;SRP=202.786;SRR=92;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:3,16:3:108:16:561:-44.6135,0,-4.34608	1/1:34:0,34:0:0:34:1220:-108.093,-10.235,0	0/1:33:3,30:3:108:30:1080:-85.7699,0,-0.126893	1/1:97:0,97:0:0:97:3472:-312.053,-29.1999,0	1/1:20:0,20:0:0:20:716:-63.8935,-6.0206,0	1/1:21:0,21:0:0:21:748:-67.0387,-6.32163,0	1/1:25:0,25:0:0:25:896:-80.6839,-7.52575,0	1/1:39:0,39:0:0:39:1392:-124.156,-11.7402,0	1/1:54:0,54:0:0:54:1936:-173.135,-16.2556,0	0/1:21:3,18:3:93:18:644:-51.8886,0,-2.35425	1/1:18:0,18:0:0:18:648:-58.5687,-5.41854,0	1/1:60:0,60:0:0:60:2107:-187.405,-18.0618,0	1/1:49:0,49:0:0:49:1764:-157.877,-14.7505,0	1/1:22:0,22:0:0:22:776:-68.9513,-6.62266,0	1/1:41:0,41:0:0:41:1464:-131.3,-12.3422,0	0/1:25:6,19:6:216:19:676:-52.7978,0,-12.181	0/1:7:3,4:3:104:4:144:-11.1342,0,-7.58416	1/1:10:0,10:0:0:10:360:-32.5668,-3.0103,0	0/1:11:2,9:2:72:9:324:-25.7688,0,-3.51808	1/1:57:0,57:0:0:57:2044:-182.53,-17.1587,0	1/1:126:0,126:0:0:126:4483:-395.556,-37.9298,0	1/1:62:0,62:0:0:62:2224:-199.822,-18.6639,0	1/1:42:0,42:0:0:42:1512:-136.056,-12.6433,0	1/1:22:0,22:0:0:22:777:-68.3851,-6.62266,0	1/1:38:0,38:0:0:38:1364:-121.34,-11.4391,0	1/1:60:4,56:4:144:56:1985:-165.061,-4.74818,0	1/1:116:0,116:0:0:116:4133:-366.06,-34.9195,0	0/1:12:6,6:6:216:6:197:-14.2362,0,-16.1084	1/1:112:1,111:1:32:111:3981:-353.689,-30.5162,0	1/1:31:0,31:0:0:31:1112:-99.0245,-9.33193,0	1/1:16:0,16:0:0:16:568:-51.3245,-4.81648,0	1/1:4:0,4:0:0:4:144:-13.1295,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.0425,-1.20412,0	1/1:165:0,165:0:0:165:5847:-522.023,-49.67,0	1/1:71:0,71:0:0:71:2534:-226.653,-21.3731,0	1/1:331:0,331:0:0:331:11851:-1055.71,-99.6409,0	1/1:90:0,90:0:0:90:3228:-289.98,-27.0927,0	1/1:51:0,51:0:0:51:1828:-161.455,-15.3525,0	0/1:18:5,13:5:180:13:464:-36.1164,0,-11.1101	1/1:46:0,46:0:0:46:1638:-144.712,-13.8474,0	1/1:14:1,13:1:36:13:464:-38.0836,-0.733725,0	1/1:64:2,62:2:72:62:2219:-188.56,-12.4357,0	1/1:12:0,12:0:0:12:431:-38.2021,-3.61236,0	0/1:17:4,13:4:140:13:464:-36.854,0,-7.82567	1/1:30:0,30:0:0:30:1072:-96.474,-9.0309,0	1/1:53:0,53:0:0:53:1896:-170.67,-15.9546,0	1/1:38:0,38:0:0:38:1353:-120.135,-11.4391,0	1/1:85:0,85:0:0:85:3037:-270.919,-25.5876,0	1/1:89:0,89:0:0:89:3185:-285.679,-26.7917,0	1/1:17:0,17:0:0:17:608:-54.9208,-5.11751,0	1/1:102:0,102:0:0:102:3652:-327.814,-30.7051,0	1/1:98:0,98:0:0:98:3489:-313.223,-29.5009,0	0/1:5:1,4:1:36:4:144:-11.7363,0,-2.08802	1/1:8:0,8:0:0:8:288:-26.1196,-2.40824,0	.:.:.:.:.:.:.:.	0/1:12:2,10:2:72:10:360:-28.6541,0,-3.19543	1/1:39:0,39:0:0:39:1392:-125.242,-11.7402,0	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	1/1:27:0,27:0:0:27:964:-83.6754,-8.12781,0	1/1:60:0,60:0:0:60:2137:-191.753,-18.0618,0	1/1:85:0,85:0:0:85:3044:-273.594,-25.5876,0	1/1:63:0,63:0:0:63:2256:-202.745,-18.9649,0	1/1:62:0,62:0:0:62:2232:-200.852,-18.6639,0	1/1:31:0,31:0:0:31:1088:-96.7869,-9.33193,0	1/1:31:0,31:0:0:31:1086:-97.7719,-9.33193,0	1/1:45:0,45:0:0:45:1620:-144.693,-13.5464,0	0/1:27:9,18:9:324:18:633:-49.0351,0,-21.3748	1/1:83:0,83:0:0:83:2967:-261.729,-24.9855,0	1/1:51:0,51:0:0:51:1820:-162.804,-15.3525,0	1/1:32:0,32:0:0:32:1144:-103.106,-9.63296,0	1/1:165:0,165:0:0:165:5894:-527.2,-49.67,0	1/1:35:1,34:1:36:34:1224:-106.142,-6.94288,0	1/1:64:0,64:0:0:64:2300:-206.135,-19.2659,0	1/1:34:0,34:0:0:34:1216:-107.5,-10.235,0	1/1:58:0,58:0:0:58:2057:-184.853,-17.4597,0	1/1:12:0,12:0:0:12:417:-37.6539,-3.61236,0	1/1:37:0,37:0:0:37:1324:-118.788,-11.1381,0	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.1295,-1.20412,0	1/1:23:0,23:0:0:23:828:-74.3786,-6.92369,0	1/1:106:0,106:0:0:106:3793:-340.676,-31.9092,0	1/1:40:0,40:0:0:40:1412:-127.131,-12.0412,0	1/1:34:0,34:0:0:34:1220:-109.877,-10.235,0	0/1:6:2,4:2:72:4:144:-11.4886,0,-5.0297	1/1:57:0,57:0:0:57:2021:-181.595,-17.1587,0	1/1:12:0,12:0:0:12:428:-38.4026,-3.61236,0	1/1:38:0,38:0:0:38:1356:-121.416,-11.4391,0	1/1:31:0,31:0:0:31:1104:-99.1178,-9.33193,0	0/1:11:6,5:6:216:5:180:-12.9865,0,-15.8433	0/1:37:16,21:16:576:21:752:-55.5022,0,-40.7848	0/1:25:12,13:12:432:13:468:-34.8737,0,-31.6745	1/1:42:0,42:0:0:42:1512:-135.791,-12.6433,0	1/1:51:0,51:0:0:51:1800:-161.936,-15.3525,0
chr03	24595845	.	AATGA	AATGG,GATGG	116486	PASS	AB=0.602973,0.396152;ABP=213.645,217.238;AC=157,29;AF=0.844086,0.155914;AN=186;AO=4618,911;CIGAR=4M1X,1X3M1X;DP=5540;DPB=5541;DPRA=0,1.54018;EPP=9996.16,1981.22;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=1.47312,2.11765;MQM=59.8764,33.8057;MQMR=60;NS=93;NUMALT=2;ODDS=1.0341;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=31.5,36;PQR=31.5;PRO=1;QA=164337,31980;QR=36;RO=1;RPL=4618,911;RPP=10030.9,1981.22;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=4614,911;SAP=9996.16,1981.22;SAR=4,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,19,24:0:0:19,24:676,853:-115.106,-59.9946,-54.275,-55.4469,0,-48.2222	1/1:32:0,32,0:0:0:32,0:1127,0:-101.737,-9.63296,0,-101.737,-9.63296,-101.737	1/2:103:0,56,47:0:0:56,47:1992,1646:-278.721,-116.358,-99.5005,-162.634,0,-148.486	1/1:128:0,128,0:0:0:128,0:4580,0:-412.362,-38.5318,0,-412.362,-38.5318,-412.362	1/1:12:0,12,0:0:0:12,0:416,0:-37.7716,-3.61236,0,-37.7716,-3.61236,-37.7716	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:57:0,56,0:0:0:56,0:2003,0:-180.183,-16.8577,0,-180.183,-16.8577,-180.183	1/1:21:0,21,0:0:0:21,0:748,0:-67.6453,-6.32163,0,-67.6453,-6.32163,-67.6453	1/1:21:0,21,0:0:0:21,0:748,0:-67.6453,-6.32163,0,-67.6453,-6.32163,-67.6453	1/2:89:0,53,36:0:0:53,36:1877,1243:-244.419,-91.497,-75.5424,-153.252,0,-142.415	1/1:35:0,35,0:0:0:35,0:1235,0:-111.453,-10.5361,0,-111.453,-10.5361,-111.453	1/1:16:0,16,0:0:0:16,0:568,0:-51.4519,-4.81648,0,-51.4519,-4.81648,-51.4519	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/1:29:0,29,0:0:0:29,0:1036,0:-93.4935,-8.72987,0,-93.4935,-8.72987,-93.4935	1/1:43:0,43,0:0:0:43,0:1532,0:-138.173,-12.9443,0,-138.173,-12.9443,-138.173	1/2:68:0,39,29:0:0:39,29:1388,1019:-184.658,-71.5069,-59.7667,-113.479,0,-104.749	1/2:53:0,33,20:0:0:33,20:1180,714:-145.879,-49.6331,-39.6991,-96.5725,0,-90.5519	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:45:0,30,15:0:0:30,15:1063,530:-123.564,-36.9353,-27.9044,-86.9495,0,-82.434	1/1:104:0,103,1:0:0:103,1:3645,30:-328.003,-31.0061,0,-326.034,-28.7833,-325.733	1/1:39:0,39,0:0:0:39,0:1347,0:-121.521,-11.7402,0,-121.521,-11.7402,-121.521	1/1:69:0,69,0:0:0:69,0:2451,0:-220.845,-20.7711,0,-220.845,-20.7711,-220.845	1/1:102:0,102,0:0:0:102,0:3641,0:-327.894,-30.7051,0,-327.894,-30.7051,-327.894	1/2:53:0,41,12:0:0:41,12:1456,416:-148.318,-29.641,-17.2988,-118.993,0,-115.381	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:233:0,171,62:0:0:171,62:6021,2185:-653.535,-163.506,-112.029,-490.363,0,-471.699	1/1:51:0,49,1:0:0:49,1:1727,35:-155.387,-14.7505,0,-152.539,-11.8781,-152.238	1/2:29:0,17,12:0:0:17,12:604,419:-79.5828,-30.3393,-25.2218,-49.5731,0,-45.9607	1/1:170:0,170,0:0:0:170,0:6034,0:-543.164,-51.1751,0,-543.164,-51.1751,-543.164	1/1:47:0,46,1:0:0:46,1:1635,36:-147.125,-13.8474,0,-144.615,-11.0248,-144.314	1/1:118:0,118,0:0:0:118,0:4207,0:-378.808,-35.5215,0,-378.808,-35.5215,-378.808	1/2:13:0,11,2:0:0:11,2:396,70:-37.6143,-5.25928,-1.94795,-32.6714,0,-32.0694	1/2:24:0,16,8:0:0:16,8:572,281:-66.7602,-20.0878,-15.2713,-46.9969,0,-44.5887	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	.:.:.:.:.:.:.:.	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:127:0,127,0:0:0:127,0:4522,0:-407.06,-38.2308,0,-407.06,-38.2308,-407.06	1/1:41:0,41,0:0:0:41,0:1451,0:-130.879,-12.3422,0,-130.879,-12.3422,-130.879	1/2:64:0,44,20:0:0:44,20:1580,689:-176.945,-48.0611,-34.8158,-129.201,0,-123.181	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:96:0,67,29:0:0:67,29:2395,1035:-268.063,-72.7512,-52.5822,-195.637,0,-186.907	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/2:77:0,54,23:0:0:54,23:1928,812:-214.644,-57.4315,-41.1759,-157.536,0,-150.613	1/2:94:0,55,39:0:0:55,39:1968,1363:-259.881,-99.3795,-82.8228,-160.835,0,-149.095	1/1:32:1,31,0:1:36:31,0:1100,0:-95.7081,-6.03469,0,-96.0092,-9.33193,-98.9467	1/1:37:0,37,0:0:0:37,0:1324,0:-119.457,-11.1381,0,-119.457,-11.1381,-119.457	1/1:35:0,35,0:0:0:35,0:1224,0:-110.463,-10.5361,0,-110.463,-10.5361,-110.463	1/1:79:0,79,0:0:0:79,0:2815,0:-253.583,-23.7814,0,-253.583,-23.7814,-253.583	1/1:63:0,63,0:0:0:63,0:2240,0:-201.864,-18.9649,0,-201.864,-18.9649,-201.864	1/2:149:0,90,59:0:0:90,59:3206,2059:-409.585,-148.878,-121.786,-261.037,0,-243.276	1/1:74:0,74,0:0:0:74,0:2639,0:-237.659,-22.2762,0,-237.659,-22.2762,-237.659	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:93:0,49,42:0:0:49,42:1748,1499:-247.419,-104.898,-90.147,-142.54,0,-129.896	1/1:49:0,48,0:0:0:48,0:1715,0:-154.34,-14.4494,0,-154.34,-14.4494,-154.34	1/2:6:0,3,3:0:0:3,3:108,108:-16.6791,-7.8431,-6.94001,-9.17208,0,-8.26899	1/2:116:0,61,55:0:0:61,55:2176,1909:-311.459,-134.044,-115.682,-177.744,0,-161.187	1/1:43:0,43,0:0:0:43,0:1528,0:-137.802,-12.9443,0,-137.802,-12.9443,-137.802	1/1:8:0,8,0:0:0:8,0:288,0:-26.2665,-2.40824,0,-26.2665,-2.40824,-26.266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chr03	24628708	.	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chr03	24703431	.	T	C	13381.2	PASS	AB=0.508238;ABP=3.94054;AC=31;AF=0.166667;AN=186;AO=810;CIGAR=1X;DP=4861;DPB=4861;DPRA=1.15812;EPP=1761.9;EPPR=8784.45;GTI=2;LEN=1;MEANALT=1.02564;MQM=59.9333;MQMR=59.9713;NS=93;NUMALT=1;ODDS=0.149316;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28858;QR=145156;RO=4048;RPL=810;RPP=1761.9;RPPR=8784.45;RPR=0;RUN=1;SAF=0;SAP=1761.9;SAR=810;SRF=0;SRP=8793.13;SRR=4048;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:14,17:14:504:17:606:-45.5391,0,-36.3662	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:63:27,36:27:972:36:1263:-95.0053,0,-68.833	0/0:103:103,0:103:3679:0:0:0,-31.0061,-331.312	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.872	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:57:29,28:29:1040:28:992:-72.4348,0,-76.7557	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/1:31:16,15:16:576:15:531:-38.79,0,-42.8431	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.517	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:23:22,1:22:784:1:36:0,-3.32541,-67.2856	0/1:44:27,17:27:968:17:608:-41.8067,0,-74.192	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:231:110,121:110:3948:121:4325:-319.888,0,-285.973	0/0:110:109,1:109:3900:1:36:0,-29.515,-347.596	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/1:71:64,7:64:2277:7:237:-0.28593,0,-183.817	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:7:1,6:1:36:6:201:-16.3098,0,-1.49106	0/1:15:13,2:13:464:2:72:-2.32127,0,-37.5821	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:116:115,1:115:4124:1:27:0,-32.2197,-368.644	0/0:118:117,1:117:4181:1:36:0,-31.9233,-372.855	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.2574	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:48:25,22:25:896:22:788:-56.7366,0,-66.4522	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:72:39,33:39:1400:33:1172:-83.6201,0,-104.62	0/1:29:16,13:16:576:13:464:-33.3676,0,-43.4451	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.693	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.003	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:56:32,24:32:1152:24:856:-60.417,0,-87.1325	0/0:128:128,0:128:4589:0:0:0,-38.5318,-413.172	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:91:50,41:50:1784:41:1455:-103.851,0,-133.449	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:64:30,34:30:1080:34:1220:-90.8409,0,-78.2473	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:166:41,125:41:1476:125:4454:-351.06,0,-83.1652	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:116:115,1:115:4127:1:36:0,-31.3212,-368.014	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:64:45,19:45:1607:19:669:-41.2696,0,-125.653	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:115:113,0:113:4029:0:0:0,-34.0164,-361.073	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:76:30,46:30:1080:46:1646:-125.55,0,-74.5991	0/0:50:49,1:49:1756:1:36:0,-11.4532,-154.726	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:56:34,22:34:1216:22:788:-54.3871,0,-92.8889	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:38:18,20:18:648:20:716:-53.3286,0,-47.2127	0/0:64:63,1:63:2264:1:36:0,-15.6676,-200.424	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.038	0/0:39:38,1:38:1368:1:36:0,-8.14189,-119.823	0/1:31:9,22:9:324:22:780:-61.1911,0,-20.1739	0/1:68:33,35:33:1188:35:1256:-92.8752,0,-86.7586	0/1:29:9,20:9:324:20:708:-55.3157,0,-20.776	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65
chr03	24726378	.	T	C	149710	PASS	AB=0.468578;ABP=24.8444;AC=158;AF=0.840426;AN=188;AO=6878;CIGAR=1X;DP=8246;DPB=8246;DPRA=0;EPP=14903.7;EPPR=2958.39;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9849;MQMR=59.9949;NS=94;NUMALT=1;ODDS=1.66807;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244214;QR=48704;RO=1365;RPL=4;RPP=14903.7;RPPR=2958.39;RPR=6874;RUN=1;SAF=0;SAP=14938.4;SAR=6878;SRF=0;SRP=2967.07;SRR=1365;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:15,10:15:536:10:352:-24.4924,0,-41.0491	1/1:112:0,112:0:0:112:3963:-356.863,-33.7154,0	0/1:88:47,41:47:1669:41:1460:-105.205,0,-124.005	1/1:72:0,72:0:0:72:2579:-232.359,-21.6742,0	1/1:91:1,90:1:36:90:3228:-287.143,-23.7955,0	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	1/1:86:0,86:0:0:86:3069:-276.438,-25.8886,0	1/1:125:0,125:0:0:125:4401:-396.263,-37.6288,0	1/1:57:0,57:0:0:57:2025:-182.521,-17.1587,0	0/1:111:61,50:61:2176:50:1775:-126.618,0,-162.692	1/1:82:0,82:0:0:82:2923:-263.305,-24.6845,0	1/1:78:0,78:0:0:78:2759:-248.54,-23.4803,0	1/1:77:0,77:0:0:77:2736:-246.481,-23.1793,0	1/1:103:0,103:0:0:103:3626:-326.55,-31.0061,0	1/1:80:0,80:0:0:80:2851:-256.828,-24.0824,0	0/1:51:26,25:26:928:25:870:-63.2612,0,-68.4857	0/1:85:31,54:31:1116:54:1892:-144.968,0,-75.1641	1/1:80:0,80:0:0:80:2798:-252.06,-24.0824,0	0/1:71:31,40:31:1116:40:1423:-106.994,0,-79.3786	1/1:180:1,179:1:36:179:6383:-570.962,-50.5871,0	1/1:111:0,111:0:0:111:3933:-354.162,-33.4143,0	1/1:98:0,98:0:0:98:3464:-311.971,-29.5009,0	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	0/1:100:51,49:51:1809:49:1756:-128.221,0,-132.98	1/1:68:0,68:0:0:68:2406:-216.796,-20.47,0	0/1:290:168,122:168:6003:122:4333:-302.844,0,-453.077	1/1:155:0,153:0:0:153:5439:-489.282,-46.0576,0	0/1:55:21,34:21:756:34:1212:-92.8297,0,-51.8106	1/1:250:0,250:0:0:250:8953:-805.749,-75.2575,0	1/1:122:9,113:9:324:113:4013:-331.853,-7.21981,0	1/1:74:0,74:0:0:74:2628:-236.766,-22.2762,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3601	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:15:0,15:0:0:15:521:-47.2163,-4.51545,0	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	1/1:220:0,220:0:0:220:7770:-699.342,-66.2266,0	1/1:153:0,153:0:0:153:5439:-489.639,-46.0576,0	0/1:144:77,67:77:2752:67:2386:-171.648,0,-204.574	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:98:59,39:59:2120:39:1404:-97.1583,0,-161.568	1/1:68:0,68:0:0:68:2414:-217.515,-20.47,0	0/1:111:71,40:71:2514:40:1428:-95.4032,0,-193.098	0/1:60:24,36:24:855:36:1256:-95.2754,0,-59.2084	1/1:72:0,72:0:0:72:2553:-230.013,-21.6742,0	1/1:50:0,50:0:0:50:1769:-159.491,-15.0515,0	1/1:103:0,103:0:0:103:3652:-328.885,-31.0061,0	1/1:141:0,141:0:0:141:5022:-452.127,-42.4452,0	1/1:88:0,88:0:0:88:3134:-282.284,-26.4906,0	0/1:131:73,58:73:2596:58:2012:-141.865,0,-194.455	1/1:93:0,93:0:0:93:3322:-299.197,-27.9958,0	1/1:31:0,31:0:0:31:1096:-98.9477,-9.33193,0	0/1:146:71,75:71:2512:75:2672:-196.773,0,-182.381	1/1:52:0,52:0:0:52:1850:-166.707,-15.6536,0	0/1:26:12,14:12:428:14:496:-37.1475,0,-31.032	0/1:92:53,39:53:1904:39:1387:-97.4334,0,-143.943	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:34:20,14:20:707:14:500:-35.1012,0,-53.7196	1/1:84:0,84:0:0:84:2990:-269.332,-25.2865,0	1/1:142:0,142:0:0:142:5004:-450.515,-42.7463,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:115:0,115:0:0:115:4073:-366.757,-34.6185,0	1/1:152:0,152:0:0:152:5426:-488.469,-45.7566,0	1/1:78:0,78:0:0:78:2770:-249.54,-23.4803,0	1/1:62:0,62:0:0:62:2212:-199.345,-18.6639,0	1/1:65:0,65:0:0:65:2299:-207.17,-19.567,0	0/1:146:104,42:104:3711:42:1500:-91.3442,0,-290.242	1/1:51:0,51:0:0:51:1797:-162.011,-15.3525,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:97:0,97:0:0:97:3443:-310.085,-29.1999,0	1/1:23:0,23:0:0:23:806:-72.8582,-6.92369,0	0/1:53:22,31:22:779:31:1104:-83.716,0,-54.4775	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:132:0,132:0:0:132:4664:-419.925,-39.736,0	1/1:184:0,184:0:0:184:6582:-592.46,-55.3895,0	0/1:101:58,43:58:2071:43:1507:-105.516,0,-156.256	1/1:119:1,118:1:36:118:4198:-374.404,-32.2243,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:132:43,89:43:1536:89:3183:-246.957,0,-98.7971	1/1:82:0,82:0:0:82:2924:-263.396,-24.6845,0	1/1:180:0,180:0:0:180:6356:-572.134,-54.1854,0	1/1:131:0,131:0:0:131:4626:-416.505,-39.4349,0	1/1:70:0,70:0:0:70:2485:-223.902,-21.0721,0	0/1:72:38,34:38:1359:34:1220:-88.4326,0,-100.936	1/1:155:0,155:0:0:155:5520:-496.928,-46.6597,0	1/1:37:0,37:0:0:37:1307:-117.931,-11.1381,0	1/1:89:0,89:0:0:89:3156:-284.267,-26.7917,0	1/1:85:0,84:0:0:84:2988:-268.9,-25.2865,0	0/1:97:48,49:48:1707:49:1725:-126.333,0,-124.715	0/1:130:80,50:80:2860:50:1780:-121.349,0,-218.504	0/1:59:32,27:32:1140:27:963:-69.2252,0,-85.1484	1/1:65:0,65:0:0:65:2280:-205.458,-19.567,0	1/1:101:0,101:0:0:101:3596:-323.848,-30.404,0
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chr03	24727091	.	G	T	28275.3	PASS	AB=0.529184;ABP=25.9512;AC=30;AF=0.16129;AN=186;AO=1662;CIGAR=1X;DP=10618;DPB=10618;DPRA=1.20615;EPP=3603.32;EPPR=19327.1;GTI=1;LEN=1;MEANALT=1.02703;MQM=59.997;MQMR=59.9998;NS=93;NUMALT=1;ODDS=1.18814;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59349;QR=319377;RO=8955;RPL=1;RPP=3603.32;RPPR=19327.1;RPR=1661;RUN=1;SAF=1662;SAP=3612;SAR=0;SRF=8953;SRP=19431.2;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:34,44:34:1216:44:1576:-118.651,0,-86.2662	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/1:232:117,115:117:4175:115:4093:-298.716,0,-306.094	0/0:222:222,0:222:7914:0:0:0,-66.8287,-712.286	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/0:91:91,0:91:3248:0:0:0,-27.3937,-292.542	0/0:196:196,0:196:6984:0:0:0,-59.0019,-628.623	0/0:111:111,0:111:3952:0:0:0,-33.4143,-355.874	0/1:114:46,68:46:1648:68:2436:-185.178,0,-114.291	0/0:107:107,0:107:3831:0:0:0,-32.2102,-344.986	0/0:116:116,0:116:4139:0:0:0,-34.9195,-372.694	0/0:108:108,0:108:3856:0:0:0,-32.5112,-347.237	0/0:104:104,0:104:3696:0:0:0,-31.3071,-332.842	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:82:38,44:38:1349:44:1576:-117.447,0,-97.0238	0/1:71:41,30:41:1472:30:1076:-75.7797,0,-111.403	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/1:39:18,21:18:648:21:756:-56.6271,0,-46.9117	0/0:180:180,0:180:6412:0:0:0,-54.1854,-577.172	0/0:172:172,0:172:6142:0:0:0,-51.7772,-552.878	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:142:142,0:142:5077:0:0:0,-42.7463,-457.073	0/1:96:48,48:48:1720:48:1720:-126.187,0,-126.187	0/0:106:106,0:106:3769:0:0:0,-31.9092,-339.41	0/1:379:178,201:178:6355:201:7145:-529.017,0,-457.952	0/0:285:285,0:285:10170:0:0:0,-85.7935,-915.231	0/1:41:22,19:22:788:19:680:-49.1869,0,-58.9026	0/0:334:334,0:334:11917:0:0:0,-100.544,-1072.39	0/0:149:140,9:140:4989:9:324:0,-15.3476,-419.653	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.191	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:257:257,0:257:9158:0:0:0,-77.3647,-824.198	0/0:163:163,0:163:5779:0:0:0,-49.0679,-520.226	0/1:60:27,33:27:968:33:1184:-88.8065,0,-69.3756	.:.:.:.:.:.:.:.	0/1:141:65,76:65:2308:76:2716:-202.239,0,-165.533	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:166:93,73:93:3307:73:2586:-183.017,0,-247.876	0/1:109:53,56:53:1904:56:2003:-147.73,0,-138.825	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:129:129,0:129:4577:0:0:0,-38.8329,-412.095	0/0:251:250,1:250:8931:1:36:0,-71.9603,-800.171	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/1:169:76,93:76:2711:93:3340:-249.942,0,-193.36	0/0:100:100,0:100:3550:0:0:0,-30.103,-319.707	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:166:71,95:71:2522:95:3395:-255.794,0,-177.258	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:162:82,79:82:2927:79:2828:-205.933,0,-214.839	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.6	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:21:7,14:7:252:14:500:-39.0145,0,-16.7073	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:120:117,3:117:4188:3:108:0,-26.0484,-367.027	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:235:234,1:234:8315:1:36:0,-67.1438,-744.76	0/0:235:234,1:234:8337:1:36:0,-67.1438,-746.74	0/0:118:118,0:118:4196:0:0:0,-35.5215,-377.822	0/0:118:118,0:118:4213:0:0:0,-35.5215,-379.35	0/0:267:264,3:264:9385:3:93:0,-71.6983,-835.942	0/1:241:91,150:91:3253:150:5373:-411.152,0,-220.441	0/0:57:57,0:57:1998:0:0:0,-17.1587,-180.09	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:114:52,62:52:1854:62:2184:-162.505,0,-132.821	0/0:109:109,0:109:3900:0:0:0,-32.8123,-351.194	0/0:132:132,0:132:4698:0:0:0,-39.736,-422.979	0/0:244:244,0:244:8737:0:0:0,-73.4513,-786.318	0/1:173:76,97:76:2713:97:3476:-260.973,0,-192.334	0/0:125:125,0:125:4445:0:0:0,-37.6287,-400.222	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:114:55,59:55:1949:59:2120:-156.751,0,-141.367	0/0:196:196,0:196:6964:0:0:0,-59.0019,-626.824	0/0:209:209,0:209:7434:0:0:0,-62.9153,-669.105	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/1:62:30,32:30:1068:32:1148:-84.966,0,-77.7682	0/0:170:169,1:169:6048:1:22:0,-48.9752,-542.224	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.5	0/0:101:101,0:101:3587:0:0:0,-30.404,-323.036	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/1:58:32,26:32:1132:26:931:-66.6489,0,-84.7288	0/1:97:59,38:59:2097:38:1360:-93.5007,0,-159.798	0/1:98:37,61:37:1324:61:2176:-166.606,0,-89.9612	0/0:168:168,0:168:5977:0:0:0,-50.573,-538.037	0/0:180:179,1:179:6391:1:36:0,-50.5871,-571.682
chr03	24781003	.	C	T	19611.4	PASS	AB=0.552492;ABP=52.4793;AC=31;AF=0.166667;AN=186;AO=1159;CIGAR=1X;DP=6677;DPB=6677;DPRA=1.10252;EPP=2519.75;EPPR=11976.5;GTI=1;LEN=1;MEANALT=1;MQM=59.9758;MQMR=59.9951;NS=93;NUMALT=1;ODDS=1.42977;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41197;QR=195801;RO=5518;RPL=0;RPP=2519.75;RPPR=11985.2;RPR=1159;RUN=1;SAF=0;SAP=2519.75;SAR=1159;SRF=1;SRP=11976.5;SRR=5517;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:12,20:12:428:20:716:-55.1348,0,-29.2258	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:48:17,31:17:604:31:1112:-85.9419,0,-40.2412	0/0:226:226,0:226:7881:0:0:0,-68.0328,-709.331	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:84:84,0:84:2967:0:0:0,-25.2865,-267.262	0/0:100:100,0:100:3550:0:0:0,-30.103,-319.71	0/0:103:100,3:100:3531:3:108:0,-20.9309,-307.925	0/1:121:66,55:66:2327:55:1972:-141.33,0,-173.263	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/0:61:61,0:61:2150:0:0:0,-18.3628,-193.767	0/0:68:68,0:68:2416:0:0:0,-20.47,-217.697	0/0:76:76,0:76:2676:0:0:0,-22.8783,-241.085	0/1:54:23,31:23:815:31:1095:-82.6035,0,-57.4151	0/1:43:25,18:25:892:18:648:-45.7076,0,-67.6554	0/0:82:81,1:81:2892:1:36:0,-21.0862,-256.918	0/1:41:30,11:30:1064:11:392:-23.2778,0,-83.7294	0/0:76:76,0:76:2696:0:0:0,-22.8783,-242.886	0/0:97:97,0:97:3411:0:0:0,-29.1999,-307.206	0/0:38:38,0:38:1330:0:0:0,-11.4391,-119.998	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.581	0/1:121:75,46:75:2683:46:1636:-111.104,0,-205.29	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/1:210:94,116:94:3341:116:4129:-308.578,0,-237.691	0/0:182:182,0:182:6465:0:0:0,-54.7875,-581.941	0/1:34:19,15:19:653:15:536:-38.3398,0,-48.854	0/0:162:162,0:162:5721:0:0:0,-48.7669,-515.01	0/0:42:39,3:39:1396:3:104:0,-2.94045,-116.236	0/0:88:87,1:87:3094:1:36:0,-22.8924,-275.09	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:11:3,8:3:108:8:279:-22.1362,0,-6.76384	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:169:169,0:169:5958:0:0:0,-50.8741,-536.335	0/0:117:116,1:116:4134:1:36:0,-31.6222,-368.646	0/1:76:35,41:35:1235:41:1460:-108.818,0,-88.5752	.:.:.:.:.:.:.:.	0/1:107:44,63:44:1550:63:2227:-168.481,0,-107.152	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/1:138:53,85:53:1904:85:3032:-231.566,0,-130.096	0/1:63:35,28:35:1240:28:1000:-71.3505,0,-92.9396	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.306	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/0:113:113,0:113:3998:0:0:0,-34.0164,-360.013	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/1:149:58,91:58:2052:91:3220:-245.169,0,-140.096	0/0:128:128,0:128:4552:0:0:0,-38.5318,-409.847	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:50:16,34:16:567:34:1216:-94.6951,0,-36.3092	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:22:8,14:8:288:14:500:-38.7135,0,-19.6447	0/1:61:26,35:26:920:35:1248:-94.262,0,-64.7542	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:115:115,0:115:4091:0:0:0,-34.6184,-368.378	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:120:120,0:120:4282:0:0:0,-36.1236,-385.558	0/0:125:122,3:122:4323:3:108:0,-27.5536,-379.172	0/0:68:68,0:68:2420:0:0:0,-20.47,-218.057	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:35:12,23:12:424:23:816:-63.2257,0,-27.9604	0/0:20:20,0:20:704:0:0:0,-6.0206,-63.6845	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.793	0/0:82:82,0:82:2919:0:0:0,-24.6845,-262.945	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:163:83,80:83:2952:80:2834:-206.181,0,-216.847	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:118:118,0:118:4171:0:0:0,-35.5215,-375.575	0/1:77:27,50:27:968:50:1742:-133.881,0,-64.2581	0/0:188:185,3:185:6556:3:108:0,-46.5185,-580.051	0/1:16:8,8:8:275:8:288:-21.4509,0,-20.267	0/1:98:29,69:29:1027:69:2448:-191.072,0,-63.2412	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.414	0/0:106:106,0:106:3772:0:0:0,-31.9092,-339.679	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/1:83:38,45:38:1352:45:1588:-118.224,0,-96.9949	0/0:115:115,0:115:4090:0:0:0,-34.6184,-368.287	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/0:74:74,0:74:2612:0:0:0,-22.2762,-235.327	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/1:42:28,14:28:995:14:496:-32.331,0,-77.2208	0/1:97:36,61:36:1249:61:2188:-167.986,0,-83.5097	0/1:59:16,43:16:551:43:1523:-119.602,0,-32.1537	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.585	0/0:95:95,0:95:3384:0:0:0,-28.5978,-304.774
chr03	24781174	.	A	G	98771.3	PASS	AB=0.535548;ABP=19.5294;AC=159;AF=0.845745;AN=188;AO=4468;CIGAR=1X;DP=5181;DPB=5181;DPRA=18.5591;EPP=9705.15;EPPR=1551.27;GTI=1;LEN=1;MEANALT=1;MQM=59.9322;MQMR=59.986;NS=94;NUMALT=1;ODDS=6.51467;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159909;QR=25318;RO=713;RPL=4;RPP=9670.44;RPPR=1551.27;RPR=4464;RUN=1;SAF=4464;SAP=9670.44;SAR=4;SRF=713;SRP=1551.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:13,21:13:449:21:748:-57.4103,0,-30.5025	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:86:39,47:39:1373:47:1691:-126.581,0,-97.978	1/1:81:0,81:0:0:81:2869:-258.446,-24.3834,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:23:0,23:0:0:23:828:-74.7991,-6.92369,0	1/1:62:0,62:0:0:62:2216:-199.657,-18.6639,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:51:0,51:0:0:51:1836:-165.51,-15.3525,0	0/1:32:12,20:12:432:20:711:-54.6835,0,-29.5882	1/1:91:0,91:0:0:91:3276:-295.059,-27.3937,0	1/1:121:0,121:0:0:121:4337:-390.345,-36.4246,0	1/1:78:0,78:0:0:78:2800:-252.237,-23.4803,0	1/1:91:0,91:0:0:91:3268:-294.339,-27.3937,0	1/1:75:0,75:0:0:75:2688:-242.163,-22.5773,0	0/1:63:36,27:36:1269:27:968:-68.4275,0,-95.5459	0/1:61:32,29:32:1148:29:1029:-74.5583,0,-85.267	1/1:36:0,36:0:0:36:1296:-116.94,-10.8371,0	0/1:32:13,19:13:464:19:676:-51.535,0,-32.4645	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:84:0,84:0:0:84:2997:-269.961,-25.2865,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:142:61,81:61:2149:81:2904:-218.849,0,-150.93	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	1/1:126:0,126:0:0:126:4509:-405.976,-37.9298,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:56:0,56:0:0:56:2012:-180.983,-16.8577,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.1317,-2.70927,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:139:0,139:0:0:139:4981:-448.436,-41.8432,0	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	0/1:54:23,31:23:809:31:1112:-84.0956,0,-56.8727	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:40:15,25:15:517:25:900:-69.2798,0,-34.8134	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:61:36,25:36:1276:25:885:-61.6037,0,-96.7802	0/1:42:22,20:22:788:20:720:-52.484,0,-58.6015	1/1:44:0,44:0:0:44:1569:-141.5,-13.2453,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	1/1:70:0,70:0:0:70:2501:-225.341,-21.0721,0	1/1:74:0,74:0:0:74:2664:-240.004,-22.2762,0	1/1:49:1,48:1:36:48:1728:-152.204,-11.1522,0	0/1:53:22,31:22:792:31:1101:-83.4438,0,-55.6511	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:65:42,23:42:1489:23:816:-54.1249,0,-114.736	1/1:36:0,36:0:0:36:1277:-115.231,-10.8371,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:69:33,36:33:1188:36:1288:-95.4525,0,-86.4575	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:129:5,124:5:180:124:4425:-381.869,-22.2808,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:72:0,72:0:0:72:2588:-233.16,-21.6742,0	1/1:43:0,43:0:0:43:1532:-138.173,-12.9443,0	1/1:40:0,40:0:0:40:1432:-129.177,-12.0412,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:103:0,103:0:0:103:3667:-330.231,-31.0061,0	0/1:54:33,21:33:1165:21:752:-51.7506,0,-88.8994	1/1:56:1,55:1:36:55:1972:-174.157,-13.2594,0	1/1:53:0,53:0:0:53:1885:-169.927,-15.9546,0	1/1:60:0,60:0:0:60:2160:-194.656,-18.0618,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:124:49,75:49:1752:75:2684:-204.477,0,-120.636	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:91:0,91:0:0:91:3241:-291.911,-27.3937,0	1/1:49:0,49:0:0:49:1741:-156.972,-14.7505,0	0/1:64:17,47:17:596:47:1692:-133.301,0,-34.7019	1/1:71:4,67:4:144:67:2396:-202.584,-8.05951,0	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:36:15,21:15:536:21:756:-57.5301,0,-37.7377	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:74:0,74:0:0:74:2644:-238.2,-22.2762,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:78:0,78:0:0:78:2789:-251.179,-23.4803,0	0/1:29:6,23:6:208:23:828:-66.1142,0,-10.3292	1/1:103:0,103:0:0:103:3681:-331.492,-31.0061,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:83:0,83:0:0:83:2935:-264.381,-24.9855,0	1/1:88:0,88:0:0:88:3145:-283.207,-26.4906,0	0/1:82:38,44:38:1356:44:1580:-117.807,0,-97.656	0/1:171:73,98:73:2594:98:3486:-262.473,0,-182.216	0/1:43:33,10:33:1172:10:360:-19.8,0,-92.8432	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:79:0,79:0:0:79:2821:-254.125,-23.7814,0
chr03	24781184	.	TCA	TCG	98892.3	PASS	AB=0.523779;ABP=10.5489;AC=159;AF=0.845745;AN=188;AO=4501;CIGAR=2M1X;DP=5267;DPB=5267.67;DPRA=14.1478;EPP=9733.43;EPPR=1597.06;GTI=2;LEN=1;MEANALT=1.13978;MQM=59.9365;MQMR=59.9387;NS=94;NUMALT=1;ODDS=5.97024;PAIRED=0;PAIREDR=0;PAO=1;PQA=34;PQR=0;PRO=0;QA=160774;QR=26417;RO=750;RPL=5;RPP=9733.43;RPPR=1597.06;RPR=4496;RUN=1;SAF=4501;SAP=9776.81;SAR=0;SRF=750;SRP=1631.61;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:13,22:13:468:22:788:-60.7087,0,-31.9236	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:84:42,42:42:1447:42:1512:-111.088,0,-105.233	1/1:81:1,80:1:36:80:2850:-253.137,-20.7852,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:23:0,23:0:0:23:824:-74.4647,-6.92369,0	1/1:62:0,62:0:0:62:2189:-197.267,-18.6639,0	1/1:66:0,66:0:0:66:2362:-212.83,-19.868,0	1/1:51:0,50:0:0:50:1788:-160.91,-15.0515,0	0/1:32:12,20:12:432:20:720:-55.4958,0,-29.5882	1/1:93:0,93:0:0:93:3327:-299.647,-27.9958,0	1/1:124:0,124:0:0:124:4432:-399.005,-37.3277,0	1/1:81:0,81:0:0:81:2916:-262.672,-24.3834,0	1/1:92:0,91:0:0:91:3268:-293.98,-27.3937,0	1/1:75:0,75:0:0:75:2700:-243.242,-22.5773,0	0/1:62:39,23:39:1398:23:805:-54.0275,0,-107.397	0/1:63:33,30:33:1162:30:1076:-78.188,0,-85.9214	1/1:37:0,37:0:0:37:1324:-119.458,-11.1381,0	0/1:31:13,17:13:466:17:612:-46.0227,0,-32.8881	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:81:0,81:0:0:81:2887:-260.067,-24.3834,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:9:5,4:5:177:4:144:-10.6043,0,-13.5676	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:143:62,81:62:2184:81:2896:-217.829,0,-153.777	1/1:89:0,89:0:0:89:3184:-286.784,-26.7917,0	0/1:28:16,12:16:558:12:432:-30.7924,0,-42.1181	1/1:127:0,127:0:0:127:4545:-409.215,-38.2308,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:58:0,58:0:0:58:2046:-184.363,-17.4597,0	1/1:4:0,1:0:0:1:36:-3.23845,-0.30103,0	0/1:9:5,4:5:162:4:140:-10.2353,0,-12.1901	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.1317,-2.70927,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:143:0,143:0:0:143:5106:-459.683,-43.0473,0	1/1:76:0,76:0:0:76:2672:-240.719,-22.8783,0	0/1:53:23,30:23:806:30:1070:-80.6198,0,-56.9047	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:43:16,27:16:569:27:948:-72.6884,0,-38.5983	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:64:37,27:37:1321:27:965:-67.9006,0,-99.9266	0/1:43:24,19:24:853:19:684:-48.946,0,-64.1456	1/1:44:0,43:0:0:43:1509:-135.742,-12.9443,0	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	1/1:71:0,70:0:0:70:2512:-226.08,-21.0721,0	1/1:74:0,73:0:0:73:2616:-235.328,-21.9752,0	1/1:52:1,51:1:36:51:1813:-159.85,-12.0553,0	0/1:53:22,31:22:790:31:1100:-83.3557,0,-55.4707	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:65:44,21:44:1560:21:752:-48.3694,0,-121.124	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.575	0/1:73:35,38:35:1228:38:1322:-97.3003,0,-88.848	1/1:24:0,24:0:0:24:841:-76.0064,-7.22472,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:5,4:5:175:4:144:-10.6043,0,-13.3842	1/1:54:0,54:0:0:54:1928:-173.796,-16.2556,0	1/1:131:5,125:5:180:125:4470:-385.917,-22.9417,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:74:0,74:0:0:74:2647:-238.473,-22.2762,0	1/1:44:0,44:0:0:44:1562:-140.871,-13.2453,0	1/1:41:0,41:0:0:41:1476:-133.13,-12.3422,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:107:0,107:0:0:107:3799:-342.105,-32.2102,0	0/1:55:35,20:35:1236:20:716:-48.2111,0,-94.9858	1/1:58:1,56:1:36:56:2000:-176.676,-13.9203,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:64:1,62:1:36:62:2219:-196.365,-15.7264,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:130:53,77:53:1853:77:2764:-209.867,0,-127.913	1/1:71:0,71:0:0:71:2533:-228.219,-21.3731,0	1/1:93:0,93:0:0:93:3322:-299.198,-27.9958,0	1/1:50:0,50:0:0:50:1765:-159.131,-15.0515,0	0/1:67:19,48:19:657:48:1716:-134.557,0,-39.2817	1/1:73:5,68:5:168:68:2423:-203.313,-6.96254,0	0/1:14:6,8:6:203:8:284:-21.6889,0,-14.3868	0/1:37:16,21:16:553:21:756:-57.2291,0,-38.9557	1/1:55:0,55:0:0:55:1933:-174.242,-16.5567,0	1/1:75:0,73:0:0:73:2628:-236.399,-21.9752,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:78:2,76:2:69:76:2732:-239.471,-16.9579,0	0/1:28:6,22:6:216:22:788:-62.816,0,-11.3617	1/1:107:0,105:0:0:105:3755:-337.848,-31.6082,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:90:0,90:0:0:90:3224:-290.364,-27.0927,0	0/1:88:39,49:39:1383:49:1736:-130.034,0,-98.2777	0/1:175:77,98:77:2686:98:3498:-262.351,0,-189.301	0/1:42:33,9:33:1177:9:320:-16.4991,0,-93.5939	1/1:63:0,63:0:0:63:2245:-202.312,-18.9649,0	1/1:82:0,82:0:0:82:2935:-264.381,-24.6845,0
chr03	24837286	.	A	T	17012.7	PASS	AB=0.514728;ABP=6.78409;AC=31;AF=0.164894;AN=188;AO=1047;CIGAR=1X;DP=7014;DPB=7014;DPRA=0.86916;EPP=2259.2;EPPR=12851.8;GTI=1;LEN=1;MEANALT=1;MQM=59.9924;MQMR=59.9992;NS=94;NUMALT=1;ODDS=0.762497;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36643;QR=213205;RO=5965;RPL=1043;RPP=2241.93;RPPR=12938.5;RPR=4;RUN=1;SAF=1041;SAP=2224.73;SAR=6;SRF=5955;SRP=12869.1;SRR=10;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:15,16:15:520:16:559:-41.3057,0,-37.796	0/0:75:75,0:75:2657:0:0:0,-22.5772,-239.376	0/1:114:51,63:51:1820:63:2201:-164.035,0,-129.764	0/0:119:118,1:118:4228:1:36:0,-32.2243,-377.101	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:135:135,0:135:4839:0:0:0,-40.639,-435.659	0/0:59:59,0:59:2096:0:0:0,-17.7608,-188.91	0/1:94:33,61:33:1184:61:2115:-162.321,0,-78.5715	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:60:60,0:60:2136:0:0:0,-18.0618,-192.508	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/1:51:28,23:28:992:23:812:-58.0484,0,-74.2419	0/1:31:14,17:14:504:17:595:-44.5447,0,-36.3662	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:25:15,10:15:540:10:356:-24.8555,0,-41.4108	0/0:185:185,0:185:6615:0:0:0,-55.6905,-595.43	0/0:119:119,0:119:4264:0:0:0,-35.8226,-383.938	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:19:18,1:18:648:1:21:0,-3.61962,-56.5519	0/1:72:36,36:36:1280:36:1260:-92.0255,0,-93.8291	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/1:246:131,115:131:4666:115:4061:-291.625,0,-346.049	0/0:166:166,0:166:5952:0:0:0,-49.971,-535.786	0/1:31:12,19:12:424:19:664:-50.7526,0,-29.1645	0/0:270:270,0:270:9652:0:0:0,-81.2781,-868.634	0/0:70:66,4:66:2360:4:140:0,-8.12752,-199.714	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:189:189,0:189:6738:0:0:0,-56.8947,-606.497	0/0:217:217,0:217:7772:0:0:0,-65.3235,-699.51	0/1:36:18,18:18:644:18:617:-45.0129,0,-47.4535	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:101:41,60:41:1472:60:2085:-157.512,0,-102.372	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:88:36,52:36:1288:52:1786:-134.526,0,-89.7329	0/1:62:28,34:28:1008:34:1158:-85.855,0,-72.3725	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:74:73,1:73:2620:1:36:0,-18.6779,-232.449	0/0:102:101,1:101:3620:1:36:0,-27.1068,-322.407	0/0:183:183,0:183:6552:0:0:0,-55.0885,-589.762	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.717	0/1:106:64,42:64:2272:42:1487:-102.215,0,-172.834	0/0:144:143,1:143:5101:1:36:0,-39.75,-455.635	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:81:46,35:46:1652:35:1222:-85.8986,0,-124.585	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:5:3,2:3:108:2:63:-4.478,0,-8.57002	0/1:107:65,42:65:2324:42:1468:-100.2,0,-177.21	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:10:6,4:6:216:4:120:-8.08626,0,-16.7802	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:95:95,0:95:3379:0:0:0,-28.5978,-304.327	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:247:247,0:247:8844:0:0:0,-74.3544,-795.943	0/1:157:80,77:80:2868:77:2702:-196.164,0,-211.095	0/0:41:40,1:40:1432:1:36:0,-8.74395,-125.579	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.903	0/0:130:130,0:130:4637:0:0:0,-39.1339,-417.493	0/1:72:25,47:25:892:47:1647:-126.84,0,-58.9255	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:81:80,1:80:2860:1:36:0,-20.7852,-254.04	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:101:36,65:36:1280:65:2304:-177.218,0,-85.0992	0/0:61:59,2:59:2087:2:63:0,-12.3797,-182.117	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:179:179,0:179:6424:0:0:0,-53.8844,-578.245	0/1:58:27,31:27:968:31:1104:-82.2109,0,-69.9776	0/0:66:64,2:64:2283:2:72:0,-13.0313,-198.895	0/1:14:10,4:10:356:4:144:-9.0992,0,-28.1668	0/1:80:48,32:48:1720:32:1144:-79.1871,0,-131.003	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.927	0/0:247:247,0:247:8793:0:0:0,-74.3544,-791.361	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:56:55,0:55:1972:0:0:0,-16.5566,-177.434	0/1:70:38,32:38:1356:32:1136:-81.4768,0,-101.268	0/0:113:112,1:112:3971:1:36:0,-30.4181,-353.986	0/0:40:39,0:39:1388:0:0:0,-11.7402,-124.859	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/1:18:5,13:5:180:13:456:-35.9547,0,-11.1335	0/1:61:35,26:35:1252:26:882:-61.326,0,-94.6222	0/1:64:18,46:18:640:46:1627:-127.452,0,-38.6634	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001
chr03	24837385	.	GGC	AGC	171518	PASS	AB=0.468596;ABP=29.0601;AC=157;AF=0.835106;AN=188;AO=7738;CIGAR=1X2M;DP=9399;DPB=9399;DPRA=0;EPP=16118.2;EPPR=3394.22;GTI=0;LEN=1;MEANALT=1.31915;MQM=53.6194;MQMR=59.9128;NS=94;NUMALT=1;ODDS=2.52759;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275943;QR=56902;RO=1629;RPL=80;RPP=16118.2;RPPR=3394.22;RPR=7658;RUN=1;SAF=0;SAP=16805.9;SAR=7738;SRF=0;SRP=3540.34;SRR=1629;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:20,17:20:682:17:595:-42.3345,0,-50.553	1/1:129:1,128:1:36:128:4567:-406.68,-35.2346,0	0/1:162:95,66:95:3323:66:2338:-161.167,0,-250.465	1/1:211:1,209:1:36:209:7485:-667.686,-59.9766,0	1/1:71:0,71:0:0:71:2527:-227.078,-21.3731,0	1/1:76:0,76:0:0:76:2696:-242.182,-22.8783,0	1/1:151:0,150:0:0:150:5353:-479.943,-45.1545,0	1/1:135:0,134:0:0:134:4770:-426.931,-40.338,0	1/1:82:0,82:0:0:82:2937:-263.433,-24.6845,0	0/1:130:61,69:61:2145:69:2476:-183.635,0,-154.172	1/1:51:0,48:0:0:48:1678:-150.219,-14.4494,0	1/1:69:0,68:0:0:68:2414:-216.799,-20.47,0	1/1:68:1,67:1:29:67:2392:-212.414,-17.5704,0	1/1:67:0,67:0:0:67:2370:-212.945,-20.169,0	1/1:82:0,81:0:0:81:2888:-259.197,-24.3834,0	0/1:50:26,24:26:924:24:864:-62.9063,0,-68.4263	0/1:69:35,34:35:1201:34:1197:-87.1484,0,-87.6155	1/1:47:0,47:0:0:47:1675:-150.416,-14.1484,0	0/1:56:37,19:37:1307:19:676:-44.219,0,-101.074	1/1:245:0,245:0:0:245:8744:-783.409,-73.7524,0	1/1:123:0,122:0:0:122:4360:-391.198,-36.7257,0	1/1:98:0,98:0:0:98:3493:-313.878,-29.5009,0	1/1:48:0,48:0:0:48:1712:-154.152,-14.4494,0	0/1:139:67,72:67:2352:72:2565:-188.682,0,-170.066	1/1:44:0,43:0:0:43:1548:-139.064,-12.9443,0	0/1:353:167,186:167:5717:186:6621:-487.329,0,-408.402	1/1:187:2,185:2:70:185:6595:-585.454,-49.6453,0	0/1:31:15,15:15:524:15:540:-39.4765,0,-38.0991	1/1:291:1,290:1:36:290:10363:-926.795,-84.0015,0	1/1:156:5,151:5:167:151:5360:-465.591,-31.6019,0	1/1:159:0,159:0:0:159:5690:-510.438,-47.8638,0	0/1:12:9,3:9:320:3:108:-6.44983,0,-25.5302	0/1:14:9,5:9:315:5:180:-12.3152,0,-24.4737	1/1:2:0,2:0:0:2:72:-6.82968,-0.60206,0	1/1:10:0,10:0:0:10:360:-32.7106,-3.0103,0	1/1:16:0,16:0:0:16:572:-51.7617,-4.81648,0	1/1:162:0,162:0:0:162:5740:-514.236,-48.7669,0	1/1:220:0,218:0:0:218:7778:-697.839,-65.6245,0	0/1:67:37,30:37:1311:30:1071:-76.4355,0,-98.1117	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:179:80,97:80:2809:97:3447:-255.696,0,-199.409	1/1:44:1,43:1:33:43:1535:-134.946,-9.94619,0	0/1:121:69,52:69:2359:52:1860:-130.721,0,-176.142	0/1:59:29,30:29:1018:30:1071:-78.8042,0,-74.1716	1/1:41:0,41:0:0:41:1459:-131.208,-12.3422,0	1/1:125:0,125:0:0:125:4449:-398.897,-37.6288,0	1/1:111:0,111:0:0:111:3955:-354.924,-33.4143,0	1/1:141:0,140:0:0:140:4999:-448.586,-42.1442,0	1/1:139:0,138:0:0:138:4917:-440.282,-41.5421,0	0/1:163:95,68:95:3357:68:2436:-169.524,0,-253.28	1/1:222:2,219:2:69:219:7816:-695.386,-60.2763,0	1/1:15:0,15:0:0:15:540:-48.8718,-4.51545,0	0/1:296:141,155:141:4951:155:5535:-406.823,0,-356.628	1/1:43:0,43:0:0:43:1527:-137.5,-12.9443,0	0/1:27:19,8:19:670:8:288:-18.1125,0,-52.4967	0/1:130:64,64:64:2242:64:2284:-166.344,0,-163.152	1/1:32:0,32:0:0:32:1139:-102.513,-9.63296,0	0/1:6:2,4:2:70:4:144:-11.4886,0,-4.84115	0/1:23:16,7:16:525:7:241:-14.6106,0,-40.6323	1/1:70:0,69:0:0:69:2468:-221.707,-20.7711,0	1/1:117:0,117:0:0:117:4168:-374.137,-35.2205,0	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	1/1:218:0,218:0:0:218:7782:-698.756,-65.6245,0	0/1:169:94,75:94:3281:75:2673:-188.665,0,-244.637	1/1:54:0,54:0:0:54:1927:-173.27,-16.2556,0	1/1:72:0,72:0:0:72:2592:-233.089,-21.6742,0	1/1:196:2,193:2:70:193:6859:-608.677,-52.3568,0	0/1:90:49,39:49:1724:39:1400:-99.2266,0,-128.631	1/1:29:0,29:0:0:29:1022:-92.0148,-8.72987,0	1/1:64:1,63:1:28:63:2260:-200.461,-16.4662,0	1/1:67:0,67:0:0:67:2393:-215.085,-20.169,0	1/1:24:0,23:0:0:23:819:-73.5602,-6.92369,0	0/1:94:64,30:64:2246:30:1073:-68.4311,0,-174.106	1/1:63:0,63:0:0:63:2260:-203.138,-18.9649,0	1/1:168:1,166:1:36:166:5897:-525.567,-47.0228,0	1/1:196:1,193:1:36:193:6894:-616.095,-55.1389,0	0/1:104:52,52:52:1812:52:1806:-127.84,0,-132.038	1/1:108:1,107:1:36:107:3819:-339.469,-28.913,0	0/1:6:2,4:2:72:4:144:-11.4937,0,-5.03054	0/1:142:87,55:87:3074:55:1968:-134.08,0,-234.143	1/1:122:0,122:0:0:122:4354:-390.115,-36.7257,0	1/1:256:0,254:0:0:254:9108:-816.092,-76.4616,0	1/1:86:0,86:0:0:86:3067:-275.691,-25.8886,0	1/1:60:0,60:0:0:60:2123:-190.896,-18.0618,0	0/1:87:44,43:44:1530:43:1536:-111.962,0,-111.799	1/1:108:0,108:0:0:108:3855:-346.598,-32.5112,0	1/1:35:0,35:0:0:35:1252:-112.613,-10.5361,0	1/1:90:0,90:0:0:90:3215:-288.717,-27.0927,0	1/1:57:0,57:0:0:57:2018:-181.522,-17.1587,0	0/1:45:19,26:19:660:26:936:-70.8945,0,-46.1751	0/1:121:64,57:64:2249:57:2035:-146.591,0,-166.247	0/1:59:40,19:40:1414:19:680:-43.6834,0,-109.795	1/1:106:0,106:0:0:106:3794:-340.448,-31.9092,0	1/1:74:1,72:1:36:72:2554:-226.048,-18.7348,0
chr03	24837413	.	T	G	26684.5	PASS	AB=0.52621;ABP=20.7673;AC=31;AF=0.164894;AN=188;AO=1581;CIGAR=1X;DP=9359;DPB=9359;DPRA=1.18483;EPP=3436.11;EPPR=16884;GTI=0;LEN=1;MEANALT=1.02564;MQM=59.8722;MQMR=53.7818;NS=94;NUMALT=1;ODDS=1.91134;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56345;QR=278819;RO=7774;RPL=1581;RPP=3436.11;RPPR=16884;RPR=0;RUN=1;SAF=0;SAP=3436.11;SAR=1581;SRF=0;SRP=16884;SRR=7774;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:16,19:16:572:19:663:-49.4564,0,-41.126	0/0:131:131,0:131:4704:0:0:0,-39.4349,-422.581	0/1:156:66,90:66:2368:90:3201:-241.348,0,-165.033	0/0:213:212,1:212:7624:1:36:0,-60.5211,-679.663	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.014	0/0:76:76,0:76:2732:0:0:0,-22.8783,-244.953	0/0:148:148,0:148:5301:0:0:0,-44.5524,-475.796	0/0:135:135,0:135:4844:0:0:0,-40.639,-434.515	0/0:81:81,0:81:2900:0:0:0,-24.3834,-260.804	0/1:130:70,60:70:2520:60:2152:-154.813,0,-187.583	0/0:52:52,0:52:1868:0:0:0,-15.6536,-167.123	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.395	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.521	0/0:67:67,0:67:2400:0:0:0,-20.169,-215.638	0/0:83:83,0:83:2976:0:0:0,-24.9855,-267.3	0/1:48:23,25:23:828:25:883:-65.338,0,-60.2923	0/1:70:35,35:35:1256:35:1243:-91.0985,0,-92.1501	0/0:46:46,0:46:1656:0:0:0,-13.8474,-148.859	0/1:56:19,37:19:680:37:1320:-102.244,0,-44.5796	0/0:235:235,0:235:8440:0:0:0,-70.742,-757.936	0/0:123:123,0:123:4412:0:0:0,-37.0267,-396.073	0/0:99:99,0:99:3560:0:0:0,-29.802,-319.855	0/0:51:51,0:51:1787:0:0:0,-15.3525,-160.884	0/1:136:71,65:71:2556:65:2320:-168.076,0,-189.032	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.166	0/1:344:183,161:183:6561:161:5729:-412.17,0,-484.423	0/0:189:189,0:189:6800:0:0:0,-56.8947,-610.061	0/1:32:16,16:16:576:16:567:-41.7278,0,-42.4693	0/0:293:292,1:292:10481:1:36:0,-84.6035,-937.509	0/0:160:155,5:155:5572:5:180:0,-31.6127,-482.218	0/0:159:158,0:158:5672:0:0:0,-47.5627,-508.585	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.75086	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3152	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59457	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3504	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.7617	0/0:164:163,0:163:5856:0:0:0,-49.0679,-524.992	0/0:221:221,0:221:7917:0:0:0,-66.5276,-710.659	0/1:65:30,35:30:1076:35:1256:-93.7589,0,-77.4836	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/1:183:100,83:100:3596:83:2959:-211.455,0,-267.607	0/0:42:41,1:41:1472:1:36:0,-9.04498,-128.984	0/1:122:54,67:54:1940:67:2373:-177.059,0,-136.617	0/1:57:30,27:30:1080:27:968:-70.2787,0,-80.1931	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.607	0/0:123:123,0:123:4386:0:0:0,-37.0267,-392.757	0/0:110:110,0:110:3937:0:0:0,-33.1133,-353.918	0/0:141:141,0:141:5064:0:0:0,-42.4452,-454.786	0/0:137:137,0:137:4924:0:0:0,-41.2411,-440.859	0/1:162:67,95:67:2412:95:3404:-257.808,0,-168.159	0/0:221:219,2:219:7807:2:68:0,-60.0699,-694.83	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.8718	0/1:287:150,137:150:5385:137:4867:-351.761,0,-396.843	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.546	0/1:27:8,19:8:284:19:684:-53.7607,0,-17.7505	0/1:131:66,65:66:2364:65:2312:-168.906,0,-172.976	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.086	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1223	0/1:22:6,16:6:216:16:572:-45.1548,0,-12.9513	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.335	0/0:118:117,0:117:4196:0:0:0,-35.2205,-376.389	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2947	0/0:223:223,0:223:7954:0:0:0,-67.1297,-714.216	0/1:163:74,89:74:2649:89:3169:-236.365,0,-189.094	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.023	0/0:74:74,0:74:2664:0:0:0,-22.2762,-239.556	0/0:193:191,2:191:6837:2:72:0,-51.2621,-606.279	0/1:90:40,50:40:1440:50:1780:-133.39,0,-102.506	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.6302	0/0:66:65,1:65:2332:1:36:0,-16.2697,-205.713	0/0:68:68,0:68:2444:0:0:0,-20.47,-219.666	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.818	0/1:92:30,62:30:1072:62:2220:-172.37,0,-68.9118	0/0:62:62,0:62:2232:0:0:0,-18.6639,-200.621	0/0:174:174,0:174:6225:0:0:0,-52.3792,-557.773	0/0:197:197,0:197:7068:0:0:0,-59.3029,-634.72	0/1:87:38,49:38:1364:49:1744:-130.701,0,-96.4868	0/0:109:107,2:107:3844:2:72:0,-26.1415,-338.724	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.7948	0/1:140:56,84:56:2012:84:2992:-227.369,0,-138.635	0/0:119:119,0:119:4261:0:0:0,-35.8226,-382.269	0/0:256:256,0:256:9200:0:0:0,-77.0637,-826.081	0/0:85:85,0:85:3048:0:0:0,-25.5875,-273.847	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.213	0/1:86:43,43:43:1544:43:1532:-112.285,0,-113.004	0/0:112:112,0:112:4028:0:0:0,-33.7154,-362.122	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.094	0/0:91:91,0:91:3260:0:0:0,-27.3937,-292.541	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.084	0/1:45:26,19:26:936:19:680:-47.9828,0,-70.8945	0/1:119:58,61:58:2088:61:2188:-161.363,0,-151.947	0/1:55:18,37:18:644:37:1311:-101.734,0,-41.6536	0/0:111:111,0:111:3961:0:0:0,-33.4143,-355.188	0/0:73:73,0:73:2624:0:0:0,-21.9752,-235.891
chr03	24873871	.	A	T	10542.5	PASS	AB=0.384211;ABP=224.272;AC=30;AF=0.159574;AN=188;AO=748;CIGAR=1X;DP=7310;DPB=7310;DPRA=0.914564;EPP=1627.27;EPPR=14178.5;GTI=4;LEN=1;MEANALT=1.02778;MQM=60;MQMR=59.997;NS=94;NUMALT=1;ODDS=0.757452;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26807;QR=234234;RO=6560;RPL=0;RPP=1627.27;RPPR=14178.5;RPR=748;RUN=1;SAF=748;SAP=1627.27;SAR=0;SRF=6560;SRP=14247.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.582	0/1:97:68,29:68:2444:29:1040:-64.7145,0,-191.015	0/0:157:157,0:157:5606:0:0:0,-47.2617,-504.66	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.533	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:167:167,0:167:5944:0:0:0,-50.272,-535.06	0/0:194:194,0:194:6980:0:0:0,-58.3998,-628.259	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/1:82:32,50:32:1152:50:1796:-137.238,0,-79.3057	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:40:20,20:20:716:20:720:-53.0876,0,-52.7265	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:10:6,4:6:216:4:136:-9.56524,0,-16.7802	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.941	0/0:91:91,0:91:3223:0:0:0,-27.3937,-290.289	0/0:207:207,0:207:7372:0:0:0,-62.3132,-663.525	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:59:47,12:47:1669:12:432:-21.4604,0,-132.735	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.128	0/1:317:237,80:237:8466:80:2849:-161.22,0,-666.508	0/0:190:190,0:190:6756:0:0:0,-57.1957,-608.112	0/1:19:13,6:13:449:6:216:-14.0709,0,-35.0179	0/0:237:236,1:236:8464:1:36:0,-67.7458,-758.161	0/0:144:139,5:139:4984:5:180:0,-26.7963,-432.155	0/0:118:118,0:118:4217:0:0:0,-35.5215,-379.709	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/0:399:398,0:398:14175:0:0:0,-119.81,-1275.15	0/1:16:8,8:8:284:8:284:-21.0869,0,-21.0869	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:134:90,44:90:3195:44:1576:-101.794,0,-247.432	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:54:39,15:39:1396:15:532:-31.9575,0,-109.683	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.249	0/0:127:127,0:127:4518:0:0:0,-38.2308,-406.785	0/0:284:284,0:284:10158:0:0:0,-85.4925,-914.148	0/0:100:100,0:100:3550:0:0:0,-30.103,-319.707	0/1:191:110,81:110:3941:81:2916:-205.177,0,-297.383	0/0:107:107,0:107:3825:0:0:0,-32.2102,-344.445	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:93:65,28:65:2328:28:1008:-63.0406,0,-181.784	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:37:23,14:23:813:14:504:-34.56,0,-62.351	0/1:102:57,45:57:2018:45:1616:-115.025,0,-151.184	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:6:3,3:3:108:3:93:-6.87055,0,-8.26899	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:70:69,1:69:2484:1:36:0,-17.4738,-220.214	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:266:266,0:266:9441:0:0:0,-80.074,-849.653	0/1:183:130,52:130:4623:52:1868:-113.252,0,-361.084	0/0:68:68,0:68:2409:0:0:0,-20.47,-217.063	0/0:82:81,1:81:2848:1:36:0,-21.0862,-252.955	0/0:147:147,0:147:5235:0:0:0,-44.2514,-471.285	0/1:83:30,53:30:1057:53:1900:-146.292,0,-70.4535	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:67:31,36:31:1097:36:1277:-95.0621,0,-78.869	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/0:116:108,8:108:3819:8:288:0,-8.65207,-317.638	0/0:98:96,2:96:3448:2:72:0,-22.6642,-303.695	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:83:50,33:50:1757:33:1188:-82.2431,0,-133.426	0/0:138:138,0:138:4941:0:0:0,-41.5421,-444.838	0/0:176:176,0:176:6294:0:0:0,-52.9813,-566.55	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/1:36:17,19:17:608:19:684:-51.0532,0,-44.2149	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:25:8,17:8:284:17:612:-47.8877,0,-18.3776	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225
chr03	24873878	.	T	C	10695.3	PASS	AB=0.387182;ABP=211.734;AC=30;AF=0.159574;AN=188;AO=758;CIGAR=1X;DP=7229;DPB=7229;DPRA=1.04184;EPP=1605.84;EPPR=13859.8;GTI=4;LEN=1;MEANALT=1.02632;MQM=59.9789;MQMR=59.9969;NS=94;NUMALT=1;ODDS=0.0818829;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26975;QR=231486;RO=6469;RPL=5;RPP=1605.84;RPPR=13859.8;RPR=753;RUN=1;SAF=758;SAP=1648.99;SAR=0;SRF=6469;SRP=14050.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:7,1:7:243:1:36:-1.19004,0,-19.7992	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/1:96:67,29:67:2400:29:1032:-64.2946,0,-187.358	0/0:156:156,0:156:5593:0:0:0,-46.9607,-503.49	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:47:47,0:47:1659:0:0:0,-14.1484,-149.597	0/0:162:162,0:162:5792:0:0:0,-48.7669,-521.391	0/0:194:193,1:193:6896:1:36:0,-54.8015,-617.109	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:83:32,51:32:1144:51:1813:-138.464,0,-78.284	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:19:9,10:9:320:10:360:-27.0247,0,-23.4228	0/1:39:20,19:20:716:19:684:-50.1502,0,-53.0275	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/1:10:6,4:6:216:4:134:-9.38047,0,-16.7802	0/0:117:117,0:117:4184:0:0:0,-35.2205,-376.742	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:204:197,7:197:7045:7:252:0,-38.3812,-611.081	0/0:83:83,0:83:2959:0:0:0,-24.9855,-266.544	0/1:60:47,13:47:1688:13:455:-23.2202,0,-134.145	0/0:58:57,1:57:2027:1:36:0,-13.8615,-179.104	0/1:315:234,81:234:8364:81:2870:-163.657,0,-657.927	0/0:183:183,0:183:6571:0:0:0,-55.0885,-591.468	0/1:19:13,6:13:460:6:212:-13.7052,0,-36.0158	0/0:230:229,1:229:8231:1:36:0,-65.6386,-737.198	0/0:135:129,6:129:4624:6:212:0,-21.2143,-396.898	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/1:10:6,4:6:216:4:129:-8.91736,0,-16.7802	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:396:396,0:396:14131:0:0:0,-119.208,-1271.56	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:131:88,43:88:3152:43:1527:-98.2874,0,-244.47	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:55:40,15:40:1431:15:522:-30.7506,0,-112.53	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:124:124,0:124:4411:0:0:0,-37.3277,-397.164	0/0:284:284,0:284:10171:0:0:0,-85.4925,-915.319	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/1:192:110,81:110:3931:81:2897:-203.109,0,-296.126	0/0:106:106,0:106:3767:0:0:0,-31.9092,-339.231	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:93:65,28:65:2315:28:1008:-63.0406,0,-180.614	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:37:23,14:23:813:14:496:-33.8362,0,-62.351	0/1:99:56,43:56:1977:43:1544:-109.451,0,-148.401	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.371	0/0:71:70,1:70:2516:1:36:0,-17.7749,-223.093	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:263:262,0:262:9376:0:0:0,-78.8699,-843.444	0/1:183:126,57:126:4516:57:2031:-127.973,0,-351.519	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/0:141:141,0:141:5056:0:0:0,-42.4452,-455.184	0/1:81:29,52:29:1044:52:1855:-142.846,0,-69.8914	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:65:30,35:30:1064:35:1241:-92.4256,0,-76.5047	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.746	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.219	0/0:116:108,8:108:3860:8:284:0,-9.01612,-321.693	0/0:98:96,2:96:3418:2:72:0,-22.6642,-300.997	0/1:19:8,11:8:288:11:387:-29.4464,0,-20.5478	0/1:84:51,33:51:1828:33:1175:-80.7704,0,-139.514	0/0:137:137,0:137:4920:0:0:0,-41.2411,-442.949	0/0:175:175,0:175:6296:0:0:0,-52.6802,-566.729	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:36:17,19:17:612:19:680:-50.6921,0,-44.5764	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:21:11,10:11:392:10:351:-25.605,0,-29.2984	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/1:25:8,17:8:273:17:596:-46.4415,0,-17.3744	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441
chr03	24911352	.	C	G	135796	PASS	AB=0.596976;ABP=159.682;AC=157;AF=0.835106;AN=188;AO=5890;CIGAR=1X;DP=6672;DPB=6672;DPRA=0;EPP=11506.8;EPPR=1449.91;GTI=3;LEN=1;MEANALT=1.04255;MQM=58.2537;MQMR=59.7159;NS=94;NUMALT=1;ODDS=1.13147;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210566;QR=27699;RO=778;RPL=152;RPP=11506.8;RPPR=1449.91;RPR=5738;RUN=1;SAF=5890;SAP=12793;SAR=0;SRF=778;SRP=1692.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:29,32:29:1036:32:1148:-85.267,0,-75.1911	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:293:106,187:106:3776:187:6672:-512.35,0,-251.834	1/1:166:0,166:0:0:166:5964:-536.785,-49.971,0	1/1:85:0,85:0:0:85:3028:-272.338,-25.5876,0	1/1:70:0,70:0:0:70:2500:-225.252,-21.0721,0	1/1:61:0,61:0:0:61:2179:-196.362,-18.3628,0	1/1:118:0,118:0:0:118:4224:-380.333,-35.5215,0	1/1:65:0,65:0:0:65:2326:-209.6,-19.567,0	0/1:50:21,29:21:756:29:1036:-78.4886,0,-53.3157	1/1:15:0,15:0:0:15:532:-48.1974,-4.51545,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:34:0,34:0:0:34:1205:-108.754,-10.235,0	1/1:21:0,21:0:0:21:748:-67.5482,-6.32163,0	1/1:46:0,46:0:0:46:1629:-146.851,-13.8474,0	0/1:30:11,19:11:377:19:672:-51.6645,0,-25.227	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	0/1:19:11,8:11:384:8:286:-20.3659,0,-29.1751	1/1:147:0,147:0:0:147:5260:-473.364,-44.2514,0	1/1:87:0,87:0:0:87:3112:-278.956,-26.1896,0	1/1:191:0,191:0:0:191:6806:-612.589,-57.4967,0	1/1:113:0,113:0:0:113:4044:-362.966,-34.0164,0	0/1:54:12,42:12:428:42:1499:-117.598,0,-22.6032	1/1:69:0,69:0:0:69:2468:-221.922,-20.7711,0	0/1:142:59,83:59:2096:83:2959:-223.775,0,-146.164	1/1:236:0,236:0:0:236:8433:-757.66,-71.0431,0	0/1:21:8,13:8:288:13:468:-36.0585,0,-19.9458	1/1:207:0,207:0:0:207:7414:-667.279,-62.3132,0	1/1:106:2,104:2:72:104:3732:-326.871,-25.0725,0	1/1:108:0,107:0:0:107:3844:-344.65,-32.2102,0	0/1:8:5,3:5:180:3:108:-7.65264,0,-14.1438	0/1:22:13,9:13:464:9:320:-22.4853,0,-35.4748	1/1:12:0,12:0:0:12:432:-39.2035,-3.61236,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:102:0,102:0:0:102:3656:-329.166,-30.7051,0	1/1:153:0,153:0:0:153:5466:-491.396,-46.0576,0	0/1:19:9,10:9:324:10:360:-27.0247,0,-22.921	1/1:5:0,5:0:0:5:180:-16.5427,-1.50515,0	0/1:118:53,65:53:1884:65:2317:-172.981,0,-133.447	1/1:18:0,18:0:0:18:648:-58.5434,-5.41854,0	0/1:136:37,99:37:1307:99:3539:-277.334,0,-76.6974	0/1:26:14,12:14:500:12:432:-31.3898,0,-37.5094	1/1:28:0,28:0:0:28:1004:-90.6574,-8.42884,0	1/1:139:0,139:0:0:139:4963:-445.561,-41.8432,0	1/1:101:0,101:0:0:101:3600:-324.205,-30.404,0	1/1:190:0,190:0:0:190:6775:-609.674,-57.1957,0	1/1:86:0,86:0:0:86:3079:-277.28,-25.8886,0	0/1:94:40,54:40:1436:54:1921:-144.848,0,-101.241	1/1:126:0,126:0:0:126:4511:-406.023,-37.9298,0	1/1:10:0,10:0:0:10:352:-32.0135,-3.0103,0	0/1:85:31,54:31:1099:54:1911:-146.677,0,-73.6143	1/1:45:0,45:0:0:45:1605:-144.73,-13.5464,0	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	0/1:111:57,54:57:2031:54:1926:-138.972,0,-149.148	1/1:75:1,74:1:36:74:2648:-234.863,-18.979,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:9:3,6:3:108:6:212:-16.7137,0,-7.3659	1/1:93:0,93:0:0:93:3327:-299.163,-27.9958,0	1/1:45:0,45:0:0:45:1614:-145.518,-13.5464,0	1/1:13:0,13:0:0:13:468:-42.4504,-3.91339,0	1/1:156:0,156:0:0:156:5584:-502.652,-46.9607,0	0/1:98:43,55:43:1544:55:1965:-147.609,0,-109.752	1/1:39:0,39:0:0:39:1392:-125.408,-11.7402,0	1/1:86:0,85:0:0:85:3028:-272.257,-25.5876,0	1/1:75:0,75:0:0:75:2679:-241.316,-22.5773,0	0/1:76:31,45:31:1104:45:1616:-122.833,0,-76.7711	1/1:11:0,11:0:0:11:396:-35.9364,-3.31133,0	1/1:50:0,49:0:0:49:1756:-157.947,-14.7505,0	1/1:17:0,17:0:0:17:608:-55.0428,-5.11751,0	1/1:21:0,21:0:0:21:748:-67.625,-6.32163,0	0/1:111:34,77:34:1224:77:2725:-212.077,0,-77.0305	1/1:54:0,54:0:0:54:1923:-173.346,-16.2556,0	1/1:94:0,94:0:0:94:3368:-302.901,-28.2968,0	1/1:168:0,168:0:0:168:6010:-540.939,-50.573,0	0/1:93:27,66:27:952:66:2368:-185.382,0,-57.9994	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:91:38,53:38:1341:53:1895:-143.223,0,-93.5943	1/1:162:1,161:1:36:161:5745:-513.568,-45.1686,0	1/1:157:0,156:0:0:156:5599:-503.582,-46.9607,0	1/1:20:0,20:0:0:20:720:-65.0864,-6.0206,0	1/1:29:0,29:0:0:29:1040:-93.9005,-8.72987,0	0/1:21:12,9:12:428:9:324:-23.162,0,-32.5372	1/1:51:1,50:1:36:50:1800:-157.85,-11.7543,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:11:4,7:4:120:7:252:-19.6896,0,-7.78523	0/1:27:17,10:17:612:10:356:-24.1723,0,-47.2856	0/1:33:20,13:20:716:13:468:-32.5164,0,-54.8337	1/1:73:0,73:0:0:73:2611:-234.405,-21.9752,0	1/1:40:0,40:0:0:40:1413:-127.449,-12.0412,0
chr03	24911496	.	G	A	12662.7	PASS	AB=0.477676;ABP=10.0878;AC=32;AF=0.172043;AN=186;AO=795;CIGAR=1X;DP=5962;DPB=5962;DPRA=0.948524;EPP=1720.66;EPPR=11203.5;GTI=3;LEN=1;MEANALT=1;MQM=59.1975;MQMR=45.5755;NS=93;NUMALT=1;ODDS=0.479824;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28470;QR=184195;RO=5166;RPL=794;RPP=1720.66;RPPR=11203.5;RPR=1;RUN=1;SAF=795;SAP=1729.33;SAR=0;SRF=5166;SRP=11220.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:7,12:7:248:12:420:-32.4139,0,-16.7122	0/0:44:43,1:43:1548:1:36:0,-9.64704,-134.476	0/1:94:62,32:62:2212:32:1133:-73.934,0,-168.858	0/0:177:177,0:177:6310:0:0:0,-53.2823,-560.506	0/0:24:24,0:24:837:0:0:0,-7.22472,-74.8946	0/0:38:38,0:38:1364:0:0:0,-11.4391,-121.705	0/0:102:101,1:101:3590:1:36:0,-27.1068,-315.284	0/0:95:94,1:94:3357:1:36:0,-24.9996,-293.952	0/0:73:73,0:73:2612:0:0:0,-21.9752,-232.781	0/1:93:38,55:38:1345:55:1968:-147.441,0,-91.7619	0/0:18:18,0:18:620:0:0:0,-5.41854,-55.4185	0/0:42:42,0:42:1461:0:0:0,-12.6433,-129.707	0/0:51:51,0:51:1816:0:0:0,-15.3525,-162.017	0/0:37:37,0:37:1324:0:0:0,-11.1381,-118.091	0/0:54:54,0:54:1928:0:0:0,-16.2556,-171.363	0/1:36:17,19:17:600:19:684:-50.9468,0,-42.945	0/1:46:28,18:28:1004:18:648:-44.8045,0,-75.8481	0/0:38:38,0:38:1368:0:0:0,-11.4391,-122.07	0/1:39:19,20:19:684:20:712:-52.5601,0,-49.3834	0/0:103:103,0:103:3696:0:0:0,-31.0061,-327.961	0/0:87:86,0:86:3050:0:0:0,-25.8886,-271.425	0/0:101:101,0:101:3632:0:0:0,-30.404,-322.508	0/0:73:73,0:73:2591:0:0:0,-21.9752,-229.847	0/1:64:44,20:44:1567:20:716:-45.5018,0,-120.558	0/0:66:66,0:66:2368:0:0:0,-19.868,-211.024	0/1:202:119,83:119:4236:83:2972:-206.025,0,-315.5	0/0:180:180,0:180:6418:0:0:0,-54.1854,-570.476	0/1:17:7,10:7:244:10:356:-27.2637,0,-16.9561	0/0:245:244,1:244:8689:1:36:0,-70.1541,-765.485	0/0:81:78,3:78:2791:3:108:0,-14.3083,-238.61	0/0:63:63,0:63:2237:0:0:0,-18.9649,-199.058	0/1:8:6,2:6:216:2:72:-4.31678,0,-17.1435	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.0219	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.55862	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6087	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.7566	0/0:137:137,0:137:4884:0:0:0,-41.2411,-432.85	0/0:129:128,1:128:4585:1:36:0,-35.2346,-404.313	0/1:47:13,34:13:460:34:1211:-94.271,0,-27.1182	.:.:.:.:.:.:.:.	0/1:106:53,53:53:1885:53:1908:-140.066,0,-136.155	0/0:27:27,0:27:972:0:0:0,-8.12781,-86.5024	0/1:79:47,32:47:1684:32:1152:-80.2088,0,-126.419	0/1:33:14,19:14:504:19:669:-50.5879,0,-35.0706	0/0:30:30,0:30:1063:0:0:0,-9.0309,-94.6537	0/0:80:80,0:80:2861:0:0:0,-24.0824,-254.163	0/0:61:61,0:61:2169:0:0:0,-18.3628,-193.394	0/0:59:59,0:59:2081:0:0:0,-17.7608,-185.186	0/0:87:85,2:85:3040:2:72:0,-19.3529,-263.404	0/1:70:36,34:36:1292:34:1224:-89.3949,0,-93.8887	0/0:125:125,0:125:4484:0:0:0,-37.6287,-398.069	0/0:14:14,0:14:504:0:0:0,-4.21442,-44.8398	0/1:63:40,23:40:1412:23:828:-55.8746,0,-107.019	0/0:34:34,0:34:1216:0:0:0,-10.235,-108.086	0/1:10:5,5:5:176:5:180:-13.4336,0,-13.0138	0/1:70:35,35:35:1243:35:1233:-90.1624,0,-89.9366	0/0:37:37,0:37:1316:0:0:0,-11.1381,-117.181	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.0856	0/1:8:5,3:5:180:3:108:-7.66693,0,-13.9493	0/0:62:62,0:62:2200:0:0:0,-18.6639,-195.115	0/0:67:67,0:67:2375:0:0:0,-20.169,-211.079	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1295	0/0:159:159,0:159:5663:0:0:0,-47.8638,-502.22	0/1:85:36,49:36:1292:49:1760:-132.798,0,-89.3296	0/0:24:23,1:23:820:1:36:0,-3.62644,-69.6737	0/0:55:55,0:55:1963:0:0:0,-16.5566,-174.669	0/0:109:106,3:106:3784:3:108:0,-22.7371,-326.123	0/1:48:14,34:14:496:34:1224:-95.7579,0,-29.9661	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.2343	0/0:70:70,0:70:2490:0:0:0,-21.0721,-221.932	0/0:37:37,0:37:1319:0:0:0,-11.1381,-117.453	0/0:13:13,0:13:445:0:0:0,-3.91339,-39.1361	0/1:87:48,39:48:1708:39:1396:-99.4203,0,-126.173	0/0:60:60,0:60:2145:0:0:0,-18.0618,-191.15	0/0:91:91,0:91:3238:0:0:0,-27.3937,-287.9	0/0:103:103,0:103:3673:0:0:0,-31.0061,-326.435	0/1:54:34,20:34:1224:20:720:-48.8732,0,-92.9169	0/0:58:58,0:58:2080:0:0:0,-17.4597,-185.384	0/1:13:7,6:7:252:6:216:-15.8771,0,-18.8274	0/1:65:36,29:36:1292:29:1044:-74.5175,0,-95.4215	0/0:93:93,0:93:3312:0:0:0,-27.9958,-294.6	0/0:217:217,0:217:7737:0:0:0,-65.3235,-684.319	0/0:63:63,0:63:2256:0:0:0,-18.9649,-200.301	0/0:40:40,0:40:1403:0:0:0,-12.0412,-124.939	0/1:51:26,25:26:932:25:896:-65.6078,0,-67.3531	0/0:101:101,0:101:3594:0:0:0,-30.404,-319.414	0/0:36:36,0:36:1276:0:0:0,-10.8371,-112.145	0/0:57:57,0:57:2044:0:0:0,-17.1587,-182.127	0/0:59:59,0:59:2099:0:0:0,-17.7608,-187.182	0/1:19:10,9:10:360:9:324:-21.5089,0,-26.6638	0/1:53:23,30:23:820:30:1080:-81.5587,0,-57.0499	0/1:27:8,19:8:279:19:680:-53.4014,0,-17.0413	0/0:60:60,0:60:2143:0:0:0,-18.0618,-190.58	0/0:58:58,0:58:2071:0:0:0,-17.4597,-184.198
chr03	24915236	.	T	A	151198	PASS	AB=0.502095;ABP=3.11039;AC=156;AF=0.829787;AN=188;AO=6965;CIGAR=1X;DP=8291;DPB=8291;DPRA=0;EPP=15127.3;EPPR=2860.67;GTI=1;LEN=1;MEANALT=1.05319;MQM=58.9452;MQMR=59.6391;NS=94;NUMALT=1;ODDS=3.0377;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247500;QR=47204;RO=1316;RPL=0;RPP=15127.3;RPPR=2860.67;RPR=6965;RUN=1;SAF=6965;SAP=15127.3;SAR=0;SRF=1316;SRP=2860.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:27,24:27:972:24:849:-61.366,0,-72.4229	1/1:113:1,111:1:36:111:3939:-351.059,-30.4769,0	0/1:109:60,49:60:2160:49:1752:-125.133,0,-161.66	1/1:210:0,210:0:0:210:7498:-674.78,-63.2163,0	1/1:89:0,89:0:0:89:3177:-286.118,-26.7917,0	1/1:54:0,54:0:0:54:1917:-172.785,-16.2556,0	1/1:162:0,162:0:0:162:5754:-517.913,-48.7669,0	1/1:154:0,153:0:0:153:5400:-485.716,-46.0576,0	1/1:88:1,87:1:36:87:3120:-277.394,-22.8924,0	0/1:55:22,33:22:792:33:1165:-88.586,0,-55.0467	1/1:17:0,17:0:0:17:597:-54.0497,-5.11751,0	1/1:50:0,50:0:0:50:1792:-161.543,-15.0515,0	1/1:51:0,51:0:0:51:1820:-164.062,-15.3525,0	1/1:61:0,61:0:0:61:2188:-197.162,-18.3628,0	1/1:42:0,42:0:0:42:1508:-135.998,-12.6433,0	0/1:44:25,19:25:900:19:684:-48.6373,0,-68.0619	0/1:43:21,22:21:752:22:788:-58.2919,0,-55.062	1/1:33:0,33:0:0:33:1184:-106.855,-9.93399,0	0/1:20:14,6:14:504:6:216:-13.7675,0,-39.5708	1/1:326:0,326:0:0:326:11495:-1034.31,-98.1358,0	1/1:121:0,121:0:0:121:4325:-388.189,-36.4246,0	0/1:133:79,54:79:2832:54:1910:-132.116,0,-215.079	1/1:110:0,110:0:0:110:3858:-347.371,-33.1133,0	0/1:116:54,62:54:1921:62:2209:-164.13,0,-138.173	1/1:61:0,61:0:0:61:2176:-196.083,-18.3628,0	0/1:402:179,223:179:6400:223:7891:-589.117,0,-454.977	1/1:150:0,150:0:0:150:5338:-479.135,-45.1545,0	0/1:20:9,11:9:324:11:396:-29.9577,0,-23.4806	1/1:261:0,261:0:0:261:9212:-828.957,-78.5688,0	1/1:175:8,167:8:288:167:5930:-507.48,-26.4128,0	1/1:149:0,146:0:0:146:5191:-466.912,-43.9504,0	0/1:5:1,4:1:36:4:144:-11.8068,0,-2.09312	0/1:35:20,15:20:720:15:540:-38.3944,0,-54.5912	1/1:3:0,3:0:0:3:108:-10.0739,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.312,-1.20412,0	1/1:10:0,10:0:0:10:360:-31.365,-3.0103,0	1/1:125:0,125:0:0:125:4484:-400.956,-37.6288,0	1/1:205:0,205:0:0:205:7231:-650.764,-61.7112,0	0/1:43:30,13:30:1080:13:464:-29.1482,0,-84.5681	1/1:5:0,5:0:0:5:180:-16.55,-1.50515,0	0/1:136:45,91:45:1620:91:3202:-246.065,0,-105.145	1/1:32:0,32:0:0:32:1144:-103.257,-9.63296,0	0/1:149:59,90:59:2120:90:3191:-242.522,0,-146.2	0/1:44:24,20:24:860:20:716:-51.5146,0,-64.4718	1/1:35:0,35:0:0:35:1260:-112.327,-10.5361,0	1/1:101:0,101:0:0:101:3587:-322.994,-30.404,0	1/1:82:0,82:0:0:82:2883:-259.674,-24.6845,0	1/1:126:0,126:0:0:126:4433:-399.093,-37.9298,0	1/1:107:0,107:0:0:107:3787:-340.986,-32.2102,0	0/1:102:29,73:29:1044:73:2605:-203.963,0,-63.5627	1/1:140:0,140:0:0:140:4986:-448.833,-42.1442,0	1/1:10:0,10:0:0:10:345:-31.3772,-3.0103,0	0/1:158:77,81:77:2772:81:2843:-208.514,0,-202.107	1/1:73:0,73:0:0:73:2608:-234.94,-21.9752,0	0/1:28:21,7:21:752:7:248:-14.2327,0,-59.5774	0/1:97:50,47:50:1796:47:1661:-120.558,0,-132.674	1/1:42:0,42:0:0:42:1508:-135.998,-12.6433,0	0/1:10:8,2:8:288:2:72:-3.82558,0,-23.2571	0/1:17:9,8:9:324:8:288:-21.1466,0,-24.3883	1/1:83:0,83:0:0:83:2912:-262.281,-24.9855,0	1/1:78:0,75:0:0:75:2692:-242.135,-22.5773,0	1/1:7:0,7:0:0:7:248:-22.6616,-2.10721,0	1/1:194:0,194:0:0:194:6933:-623.961,-58.3998,0	0/1:186:93,91:93:3332:91:3200:-232.437,0,-244.177	1/1:83:0,83:0:0:83:2935:-264.349,-24.9855,0	1/1:98:0,98:0:0:98:3467:-312.202,-29.5009,0	1/1:156:0,156:0:0:156:5558:-500.283,-46.9607,0	0/1:144:84,60:84:3016:60:2125:-148.146,0,-228.226	1/1:7:0,7:0:0:7:252:-23.0261,-2.10721,0	1/1:70:0,70:0:0:70:2512:-226.304,-21.0721,0	1/1:64:0,64:0:0:64:2277:-205.166,-19.2659,0	1/1:28:0,28:0:0:28:974:-87.9579,-8.42884,0	0/1:98:51,47:51:1832:47:1692:-123.047,0,-135.653	1/1:67:0,67:0:0:67:2389:-215.24,-20.169,0	1/1:137:0,137:0:0:137:4854:-436.961,-41.2411,0	1/1:195:0,195:0:0:195:6932:-623.87,-58.7009,0	0/1:69:32,37:32:1148:37:1328:-99.0365,0,-82.8487	1/1:87:0,87:0:0:87:3090:-278.292,-26.1896,0	0/1:16:12,4:12:417:4:144:-8.49549,0,-33.0436	0/1:104:50,54:50:1800:54:1940:-143.548,0,-130.974	1/1:91:0,91:0:0:91:3252:-291.505,-27.3937,0	1/1:158:0,158:0:0:158:5626:-506.4,-47.5627,0	1/1:73:0,73:0:0:73:2593:-232.401,-21.9752,0	1/1:39:0,39:0:0:39:1396:-125.924,-11.7402,0	0/1:56:31,25:31:1107:25:892:-63.7324,0,-82.9503	1/1:77:1,76:1:36:76:2732:-242.494,-19.581,0	1/1:36:0,36:0:0:36:1288:-116.21,-10.8371,0	1/1:49:0,49:0:0:49:1764:-159.024,-14.7505,0	1/1:38:0,38:0:0:38:1368:-122.041,-11.4391,0	0/1:22:12,10:12:432:10:352:-25.392,0,-32.5985	0/1:46:29,17:29:1036:17:608:-41.198,0,-79.7065	0/1:67:48,19:48:1719:19:676:-40.9918,0,-134.823	1/1:117:0,117:0:0:117:4162:-374.717,-35.2205,0	1/1:57:0,57:0:0:57:2036:-183.49,-17.1587,0
chr03	24943485	.	GTGCG	GTGCC,CTGCC	113023	PASS	AB=0.529167,0.46369;ABP=15.4239,22.2485;AC=153,33;AF=0.822581,0.177419;AN=186;AO=4469,782;CIGAR=4M1X,1X3M1X;DP=5296;DPB=5296.6;DPRA=0,0.822718;EPP=9707.32,1692.43;EPPR=18.2106;GTI=0;LEN=1,5;MEANALT=1.76344,2.25714;MQM=59.9906,59.9156;MQMR=58.8571;NS=93;NUMALT=2;ODDS=3.78833;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=34,34;PQR=0;PRO=0;QA=157622,26885;QR=195;RO=7;RPL=0,0;RPP=9707.32,1701.1;RPPR=18.2106;RPR=4469,782;RUN=1,1;SAF=0,1;SAP=9707.32,1692.43;SAR=4469,781;SRF=0;SRP=18.2106;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:36:0,27,8:0:0:27,8:972,278:-101.909,-22.5899,-14.4621,-79.3103,0,-76.902	1/1:112:1,111,0:1:24:111,0:3920,0:-350.594,-31.316,0,-350.895,-33.4143,-352.753	1/2:81:0,37,44:0:0:37,44:1298,1495:-227.226,-121.593,-110.455,-105.979,0,-92.7337	1/1:80:1,78,0:1:27:78,0:2770,0:-246.839,-21.3517,0,-247.14,-23.4803,-249.267	1/1:31:0,29,0:0:0:29,0:1015,0:-91.3017,-8.72987,0,-91.3017,-8.72987,-91.3017	1/1:30:0,30,0:0:0:30,0:1028,0:-92.8223,-9.0309,0,-92.8223,-9.0309,-92.8223	1/1:93:0,93,0:0:0:93,0:3324,0:-299.378,-27.9958,0,-299.378,-27.9958,-299.378	1/1:123:0,121,0:0:0:121,0:4268,0:-384.013,-36.4246,0,-384.013,-36.4246,-384.013	1/1:40:0,40,0:0:0:40,0:1409,0:-127.105,-12.0412,0,-127.105,-12.0412,-127.105	1/2:93:0,56,37:0:0:56,37:1991,1256:-264.457,-102.197,-85.3391,-162.606,0,-151.468	1/1:32:1,31,0:1:23:31,0:1044,0:-91.9599,-7.33305,0,-92.261,-9.33193,-94.0265	1/1:59:0,59,0:0:0:59,0:2076,0:-187.111,-17.7608,0,-187.111,-17.7608,-187.111	1/1:38:0,38,0:0:0:38,0:1289,0:-116.301,-11.4391,0,-116.301,-11.4391,-116.301	1/1:58:0,57,0:0:0:57,0:2009,0:-180.722,-17.1587,0,-180.722,-17.1587,-180.722	1/1:43:0,42,0:0:0:42,0:1480,0:-133.145,-12.6433,0,-133.145,-12.6433,-133.145	1/2:28:0,16,12:0:0:16,12:551,392:-76.7471,-31.9833,-27.1668,-45.098,0,-41.4856	1/2:50:0,25,25:0:0:25,25:875,848:-140.3,-69.1039,-61.5781,-71.5404,0,-64.0146	1/1:38:0,38,0:0:0:38,0:1320,0:-119.097,-11.4391,0,-119.097,-11.4391,-119.097	1/2:29:1,10,18:1:35:10,18:352,603:-74.3308,-45.9697,-45.808,-25.8103,0,-23.2393	1/1:78:0,77,0:0:0:77,0:2730,0:-245.64,-23.1793,0,-245.64,-23.1793,-245.64	1/1:220:0,218,0:0:0:218,0:7703,0:-692.992,-65.6245,0,-692.992,-65.6245,-692.992	1/2:50:0,18,32:0:0:18,32:636,1116:-142.911,-91.1134,-85.6948,-52.1495,0,-42.5165	1/1:44:0,44,0:0:0:44,0:1553,0:-140.06,-13.2453,0,-140.06,-13.2453,-140.06	1/2:76:0,51,25:0:0:51,25:1802,876:-218.387,-71.6314,-56.2789,-147.107,0,-139.581	1/1:50:0,50,0:0:0:50,0:1784,0:-160.843,-15.0515,0,-160.843,-15.0515,-160.843	1/2:177:0,105,71:0:0:105,71:3711,2481:-504.043,-201.811,-170.203,-302.223,0,-280.85	1/1:87:0,87,0:0:0:87,0:3088,0:-278.147,-26.1896,0,-278.147,-26.1896,-278.147	1/2:11:0,4,7:0:0:4,7:140,251:-32.2181,-20.8306,-19.6265,-11.7405,0,-9.63325	1/1:108:0,108,0:0:0:108,0:3845,0:-346.243,-32.5112,0,-346.243,-32.5112,-346.243	1/1:68:0,68,0:0:0:68,0:2436,0:-219.495,-20.47,0,-219.495,-20.47,-219.495	1/1:54:0,54,0:0:0:54,0:1920,0:-173.077,-16.2556,0,-173.077,-16.2556,-173.077	1/2:11:0,6,5:0:0:6,5:216,179:-32.5808,-14.9552,-13.1491,-17.9843,0,-16.4792	1/2:11:0,6,5:0:0:6,5:212,174:-31.7598,-14.4914,-12.6852,-17.6186,0,-16.1135	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:131:0,130,0:0:0:130,0:4555,0:-409.858,-39.1339,0,-409.858,-39.1339,-409.858	1/1:132:0,131,0:0:0:131,0:4639,0:-417.454,-39.4349,0,-417.454,-39.4349,-417.454	1/2:50:0,21,28:0:0:21,28:715,966:-136.59,-78.5881,-72.2665,-58.1072,0,-49.6783	.:.:.:.:.:.:.:.	1/2:32:0,18,14:0:0:18,14:644,487:-92.4652,-39.9452,-34.5267,-52.8721,0,-48.6576	1/1:27:0,27,0:0:0:27,0:942,0:-85.0923,-8.12781,0,-85.0923,-8.12781,-85.0923	1/2:71:0,37,34:0:0:37,34:1312,1193:-204.321,-97.4295,-86.2914,-107.244,0,-97.0085	1/2:38:0,17,21:0:0:17,21:608,708:-107.298,-57.7119,-52.5944,-49.9345,0,-43.6129	1/1:26:0,26,0:0:0:26,0:886,0:-80.049,-7.82678,0,-80.049,-7.82678,-80.049	1/1:47:0,47,0:0:0:47,0:1634,0:-147.342,-14.1484,0,-147.342,-14.1484,-147.342	1/1:66:0,64,0:0:0:64,0:2254,0:-202.848,-19.2659,0,-202.848,-19.2659,-202.848	1/1:55:0,55,0:0:0:55,0:1948,0:-175.596,-16.5567,0,-175.596,-16.5567,-175.596	1/1:68:0,68,0:0:0:68,0:2354,0:-212.114,-20.47,0,-212.114,-20.47,-212.114	1/2:56:0,25,30:0:0:25,30:869,1060:-157.125,-86.4748,-78.949,-70.7925,0,-61.7616	1/1:100:0,100,0:0:0:100,0:3538,0:-318.629,-30.103,0,-318.629,-30.103,-318.629	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:62:0,38,24:0:0:38,24:1313,825:-174.019,-67.3368,-55.8977,-107.026,0,-99.8016	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/2:15:0,6,9:0:0:6,9:216,313:-43.4258,-25.7964,-23.9902,-17.9843,0,-15.2751	1/2:38:0,20,16:0:0:20,16:697,552:-101.518,-44.8351,-38.8145,-56.6758,0,-51.8593	1/1:23:0,21,2:0:0:21,2:739,72:-66.4732,-6.32163,0,-60.5977,-0.0869677,-59.9956	1/2:9:0,3,6:0:0:3,6:108,210:-26.2513,-17.4357,-16.5326,-9.17208,0,-7.3659	1/2:8:0,5,3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chr03	24943495	.	T	G	11889	PASS	AB=0.460993;ABP=25.3718;AC=33;AF=0.177419;AN=186;AO=784;CIGAR=1X;DP=5346;DPB=5346;DPRA=0.896016;EPP=1696.77;EPPR=9907.1;GTI=0;LEN=1;MEANALT=1;MQM=59.9133;MQMR=59.9809;NS=93;NUMALT=1;ODDS=6.10064;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27337;QR=162307;RO=4561;RPL=0;RPP=1705.44;RPPR=9907.1;RPR=784;RUN=1;SAF=1;SAP=1696.77;SAR=783;SRF=0;SRP=9907.1;SRR=4561;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:31,8:31:1108:8:284:-14.1632,0,-88.2908	0/0:107:107,0:107:3812:0:0:0,-32.2102,-343.279	0/1:81:38,43:38:1356:43:1520:-112.71,0,-97.7669	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.882	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/0:128:128,0:128:4563:0:0:0,-38.5318,-410.837	0/0:42:42,0:42:1476:0:0:0,-12.6433,-133.134	0/1:96:59,37:59:2108:37:1284:-86.9571,0,-161.09	0/0:41:41,0:41:1448:0:0:0,-12.3422,-130.616	0/0:62:62,0:62:2198:0:0:0,-18.6639,-198.085	0/0:43:43,0:43:1522:0:0:0,-12.9443,-137.272	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/1:30:17,13:17:591:13:442:-31.0734,0,-44.4844	0/1:52:27,25:27:964:25:880:-63.8635,0,-71.4233	0/0:39:39,0:39:1349:0:0:0,-11.7402,-121.691	0/1:30:12,18:12:432:18:624:-47.4533,0,-30.1903	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.113	0/0:212:212,0:212:7551:0:0:0,-63.8184,-679.635	0/1:52:19,33:19:684:33:1159:-88.9623,0,-46.2368	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:77:49,28:49:1752:28:952:-62.8047,0,-134.785	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/1:180:107,73:107:3812:73:2580:-178.263,0,-289.094	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/1:11:4,7:4:131:7:239:-18.5314,0,-8.80214	0/0:108:108,0:108:3863:0:0:0,-32.5112,-347.865	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:54:54,0:54:1911:0:0:0,-16.2556,-172.267	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:134:134,0:134:4749:0:0:0,-40.338,-427.571	0/0:132:132,0:132:4728:0:0:0,-39.736,-425.679	0/1:50:22,28:22:772:28:976:-73.0982,0,-54.7498	.:.:.:.:.:.:.:.	0/1:33:17,16:17:603:16:561:-40.884,0,-44.6655	0/0:37:37,0:37:1307:0:0:0,-11.1381,-117.931	0/1:70:37,33:37:1320:33:1149:-82.6312,0,-98.0298	0/1:36:18,18:18:636:18:597:-43.2037,0,-46.731	0/0:28:28,0:28:988:0:0:0,-8.42884,-89.2339	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.239	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:70:70,0:70:2486:0:0:0,-21.0721,-223.993	0/1:55:25,30:25:896:30:1072:-80.2335,0,-64.4037	0/0:102:102,0:102:3640:0:0:0,-30.7051,-327.806	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:63:38,25:38:1368:25:869:-59.5542,0,-104.456	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:15:6,9:6:212:9:305:-23.2618,0,-14.9093	0/1:41:24,17:24:860:17:592:-41.2622,0,-65.3796	0/0:23:21,2:21:744:2:72:0,-0.0869673,-60.4476	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/0:57:57,0:57:2016:0:0:0,-17.1587,-181.711	0/0:87:87,0:87:3081:0:0:0,-26.1896,-277.515	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/1:91:59,32:59:2104:32:1136:-75.1546,0,-162.236	0/0:53:52,1:52:1868:1:36:0,-12.3563,-164.801	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:164:163,1:163:5807:1:21:0,-47.2691,-520.647	0/1:96:39,57:39:1400:57:2003:-151.642,0,-97.4003	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:48:48,0:48:1696:0:0:0,-14.4494,-152.926	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/1:89:45,44:45:1604:44:1548:-112.816,0,-117.858	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:132:132,0:132:4696:0:0:0,-39.736,-422.801	0/0:66:66,0:66:2335:0:0:0,-19.868,-210.41	0/1:44:20,24:20:712:24:845:-63.0155,0,-51.1613	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:9:4,5:4:140:5:169:-12.8323,0,-10.2353	0/1:35:25,10:25:900:10:352:-21.4821,0,-70.785	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.097	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/0:33:32,0:32:1115:0:0:0,-9.63296,-100.297	0/1:87:55,32:55:1940:32:1097:-72.844,0,-148.687	0/0:90:90,0:90:3130:0:0:0,-27.0927,-281.925	0/1:32:19,13:19:680:13:456:-31.7403,0,-51.8962	0/0:45:45,0:45:1572:0:0:0,-13.5463,-141.768	0/0:42:42,0:42:1474:0:0:0,-12.6433,-132.953	0/1:30:15,15:15:532:15:520:-38.097,0,-39.1822	0/1:83:46,37:46:1631:37:1275:-89.9315,0,-122.048	0/1:45:14,31:14:488:31:1046:-80.8944,0,-30.7041	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.911
chr03	24943795	.	T	C	112598	PASS	AB=0.51065;ABP=4.86033;AC=153;AF=0.822581;AN=186;AO=5103;CIGAR=1X;DP=6033;DPB=6033;DPRA=0;EPP=10730.8;EPPR=1928.06;GTI=0;LEN=1;MEANALT=1;MQM=59.6428;MQMR=60;NS=93;NUMALT=1;ODDS=0.0242652;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180479;QR=33069;RO=930;RPL=5052;RPP=10645.5;RPPR=1928.06;RPR=51;RUN=1;SAF=5093;SAP=10997.3;SAR=10;SRF=930;SRP=2022.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:16,12:16:567:12:428:-30.4217,0,-42.9319	1/1:44:0,44:0:0:44:1568:-141.403,-13.2453,0	0/1:86:40,46:40:1432:46:1625:-120.331,0,-103.289	1/1:120:0,120:0:0:120:4297:-386.889,-36.1236,0	1/1:51:0,51:0:0:51:1782:-160.654,-15.3525,0	1/1:48:0,48:0:0:48:1713:-154.385,-14.4494,0	1/1:70:0,70:0:0:70:2458:-221.462,-21.0721,0	1/1:61:0,61:0:0:61:2171:-195.534,-18.3628,0	1/1:113:0,113:0:0:113:4007:-360.8,-34.0164,0	0/1:43:22,21:22:788:21:707:-50.9918,0,-58.3005	1/1:48:0,48:0:0:48:1712:-154.359,-14.4494,0	1/1:67:0,67:0:0:67:2380:-214.409,-20.169,0	1/1:66:0,66:0:0:66:2307:-207.876,-19.868,0	1/1:97:0,97:0:0:97:3444:-310.153,-29.1999,0	1/1:54:0,54:0:0:54:1904:-171.623,-16.2556,0	0/1:70:36,34:36:1283:34:1191:-86.4176,0,-94.7005	0/1:37:22,15:22:780:15:527:-36.6083,0,-59.3849	1/1:34:0,34:0:0:34:1212:-109.334,-10.235,0	0/1:34:20,14:20:712:14:496:-34.7392,0,-54.1716	1/1:47:0,47:0:0:47:1662:-149.835,-14.1484,0	1/1:107:0,107:0:0:107:3729:-335.788,-32.2102,0	0/1:55:36,19:36:1283:19:680:-44.967,0,-99.216	1/1:76:0,76:0:0:76:2705:-243.686,-22.8783,0	0/1:36:7,29:7:252:29:1035:-82.6214,0,-12.1919	1/1:44:0,44:0:0:44:1580:-142.431,-13.2453,0	0/1:152:59,93:59:2104:93:3291:-250.645,0,-143.873	1/1:114:0,114:0:0:114:4076:-367.009,-34.3174,0	0/1:35:19,16:19:676:16:572:-41.2728,0,-50.6319	1/1:99:0,99:0:0:99:3507:-315.817,-29.802,0	1/1:87:1,86:1:36:86:3056:-271.456,-22.5913,0	1/1:90:0,90:0:0:90:3186:-286.958,-27.0927,0	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:12:5,7:5:180:7:237:-18.0467,0,-12.9397	1/1:5:0,5:0:0:5:165:-14.786,-1.50515,0	1/1:9:0,9:0:0:9:324:-29.3057,-2.70927,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:162:0,162:0:0:162:5700:-513.106,-48.7669,0	1/1:77:0,77:0:0:77:2706:-243.769,-23.1793,0	0/1:54:27,27:27:952:27:972:-71.5139,0,-69.7396	.:.:.:.:.:.:.:.	0/1:79:38,41:38:1360:41:1455:-107.455,0,-98.9192	1/1:38:1,37:1:36:37:1307:-114.331,-7.84087,0	0/1:110:57,53:57:2036:53:1896:-137.805,0,-150.399	0/1:62:29,33:29:1036:33:1146:-84.7794,0,-74.8901	1/1:50:0,50:0:0:50:1782:-160.66,-15.0515,0	1/1:108:0,108:0:0:108:3859:-347.478,-32.5112,0	1/1:61:0,61:0:0:61:2160:-194.471,-18.3628,0	1/1:95:0,95:0:0:95:3351:-301.801,-28.5979,0	1/1:60:0,60:0:0:60:2121:-191.148,-18.0618,0	0/1:61:22,39:22:792:39:1396:-107.574,0,-53.2428	1/1:64:0,64:0:0:64:2274:-204.917,-19.2659,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:63:36,27:36:1277:27:952:-67.0256,0,-96.2662	1/1:56:1,55:1:36:55:1968:-173.797,-13.2594,0	0/1:11:5,6:5:180:6:208:-15.7478,0,-13.2407	0/1:84:30,54:30:1072:54:1913:-147.152,0,-71.5059	1/1:57:0,57:0:0:57:2010:-181.167,-17.1587,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:47:0,47:0:0:47:1641:-147.958,-14.1484,0	1/1:104:1,103:1:32:103:3656:-326.033,-28.1078,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:131:0,131:0:0:131:4688:-422.075,-39.4349,0	0/1:106:48,58:48:1715:58:2033:-151.282,0,-122.726	1/1:32:0,32:0:0:32:1139:-102.79,-9.63296,0	1/1:53:0,53:0:0:53:1891:-170.463,-15.9546,0	1/1:117:0,117:0:0:117:4092:-368.433,-35.2205,0	0/1:144:89,55:89:3172:55:1961:-133.336,0,-242.357	1/1:31:0,31:0:0:31:1081:-97.5915,-9.33193,0	1/1:41:0,41:0:0:41:1425:-128.401,-12.3422,0	1/1:48:0,48:0:0:48:1694:-152.744,-14.4494,0	1/1:12:0,12:0:0:12:413:-37.4978,-3.61236,0	0/1:56:32,24:32:1108:24:842:-59.2306,0,-83.1663	1/1:44:0,44:0:0:44:1568:-141.403,-13.2453,0	1/1:131:0,131:0:0:131:4602:-414.336,-39.4349,0	1/1:116:0,116:0:0:116:4057:-365.288,-34.9195,0	0/1:60:17,43:17:612:43:1532:-120.106,0,-37.3516	1/1:78:0,78:0:0:78:2763:-248.87,-23.4803,0	0/1:19:8,11:8:288:11:379:-28.721,0,-20.5478	0/1:59:26,33:26:928:33:1169:-87.7499,0,-66.0775	1/1:53:0,53:0:0:53:1896:-170.704,-15.9546,0	1/1:116:0,116:0:0:116:4079:-367.248,-34.9195,0	1/1:81:0,81:0:0:81:2864:-257.975,-24.3834,0	1/1:67:1,66:1:36:66:2292:-202.931,-16.5707,0	0/1:44:27,17:27:955:17:604:-41.4387,0,-73.0195	1/1:138:4,134:4:144:134:4735:-412.975,-28.2285,0	0/1:37:17,20:17:595:20:710:-53.0747,0,-42.7386	1/1:69:0,69:0:0:69:2430:-218.923,-20.7711,0	1/1:63:0,63:0:0:63:2247:-202.475,-18.9649,0	0/1:44:22,22:22:769:22:783:-57.5476,0,-56.2833	0/1:104:47,57:47:1671:57:2002:-149.044,0,-119.369	0/1:68:47,21:47:1638:21:740:-46.4464,0,-127.234	1/1:91:2,89:2:72:89:3147:-276.213,-20.557,0	1/1:91:0,91:0:0:91:3198:-287.952,-27.3937,0
chr03	24962803	.	AGCC	GGCC,GGCT	361264	PASS	AB=0.458014,0.53702;ABP=70.8426,55.7452;AC=154,34;AF=0.819149,0.180851;AN=188;AO=10665,2391;CIGAR=1X3M,1X2M1X;DP=13145;DPB=13152.5;DPRA=0,0.992699;EPP=23057.7,5186.32;EPPR=16.0391;GTI=0;LEN=1,4;MEANALT=2.20213,2.63636;MQM=59.9134,59.4931;MQMR=60;NS=94;NUMALT=2;ODDS=5.98646;PAIRED=0,0;PAIREDR=0;PAO=14.5,15;PQA=300,332;PQR=0;PRO=0.5;QA=377957,83363;QR=180;RO=6;RPL=4838,1022;RPP=202.163,112.364;RPPR=8.80089;RPR=5827,1369;RUN=1,1;SAF=4850,1023;SAP=192.615,111.107;SAR=5815,1368;SRF=1;SRP=8.80089;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:92:0,53,37:0:0:53,37:1896,1293:-259.665,-105.054,-89.0996,-154.618,0,-143.48	1/1:229:0,227,1:0:0:227,1:8023,36:-721.718,-68.3338,0,-718.781,-65.3964,-718.479	1/2:156:0,55,100:0:0:55,100:1968,3462:-441.909,-281.425,-264.869,-160.633,0,-130.53	1/1:293:0,290,0:0:0:290,0:10310,0:-927.464,-87.2987,0,-927.464,-87.2987,-927.464	1/1:118:0,114,2:0:0:114,2:4068,71:-365.967,-34.3174,0,-360.182,-28.5148,-359.58	1/1:91:0,91,0:0:0:91,0:3212,0:-289.029,-27.3937,0,-289.029,-27.3937,-289.029	1/1:129:0,126,0:0:0:126,0:4439,0:-399.364,-37.9298,0,-399.364,-37.9298,-399.364	1/1:227:0,226,0:0:0:226,0:7917,0:-712.2,-68.0328,0,-712.2,-68.0328,-712.2	1/1:177:0,177,0:0:0:177,0:6210,0:-558.9,-53.2823,0,-558.9,-53.2823,-558.9	1/2:197:0,93,104:0:0:93,104:3305,3652:-566.762,-297.445,-269.449,-269.611,0,-238.304	1/1:107:0,106,1:0:0:106,1:3761,36:-338.199,-31.9092,0,-335.262,-28.6119,-334.961	1/1:153:0,153,0:0:0:153,0:5410,0:-487.032,-46.0576,0,-487.032,-46.0576,-487.032	1/1:134:0,133,0:0:0:133,0:4706,0:-423.241,-40.037,0,-423.241,-40.037,-423.241	1/1:96:0,95,0:0:0:95,0:3343,0:-300.607,-28.5979,0,-300.607,-28.5979,-300.607	1/1:144:0,143,0:0:0:143,0:5076,0:-456.666,-43.0473,0,-456.666,-43.0473,-456.666	1/2:135:1,70,64:1:28:70,64:2496,2216:-380.478,-177.309,-158.454,-201.323,0,-184.274	1/2:91:0,50,41:0:0:50,41:1788,1449:-264.133,-118.337,-103.285,-146.151,0,-133.809	1/1:111:0,111,0:0:0:111,0:3901,0:-351.286,-33.4143,0,-351.286,-33.4143,-351.286	1/2:108:0,55,53:0:0:55,53:1956,1843:-309.576,-150.168,-133.611,-159.759,0,-143.804	1/1:278:0,275,0:0:0:275,0:9798,0:-881.408,-82.7833,0,-881.408,-82.7833,-881.408	1/1:214:0,210,0:0:0:210,0:7448,0:-670.003,-63.2163,0,-670.003,-63.2163,-670.003	1/2:65:0,20,45:0:0:20,45:705,1575:-185.889,-128.488,-122.467,-57.7522,0,-44.2058	1/1:164:1,160,0:1:35:160,0:5693,0:-508.899,-45.3296,0,-509.2,-48.1648,-512.048	1/2:195:0,122,73:0:0:122,73:4325,2548:-559.762,-207.483,-170.758,-352.629,0,-330.654	1/1:114:0,114,0:0:0:114,0:4052,0:-364.867,-34.3174,0,-364.867,-34.3174,-364.867	1/2:393:0,189,203:0:0:189,203:6670,7056:-1116.52,-573.383,-516.489,-543.127,0,-482.018	1/1:278:0,278,0:0:0:278,0:9805,0:-882.129,-83.6863,0,-882.129,-83.6863,-882.129	1/2:74:0,36,38:0:0:36,38:1288,1345:-214.914,-109.883,-99.0458,-105.387,0,-93.9474	1/1:202:0,200,1:0:0:200,1:7125,36:-640.943,-60.206,0,-638.005,-57.2686,-637.704	1/1:110:0,109,0:0:0:109,0:3844,0:-345.943,-32.8123,0,-345.943,-32.8123,-345.943	1/1:161:0,151,0:0:0:151,0:5367,0:-482.81,-45.4555,0,-482.81,-45.4555,-482.81	1/2:17:0,6,11:0:0:6,11:208,386:-48.668,-31.7631,-29.9569,-17.2529,0,-13.9416	1/2:20:0,13,7:0:0:13,7:468,251:-58.9667,-20.8076,-16.8942,-38.5177,0,-36.4105	1/1:10:0,10,0:0:0:10,0:351,0:-31.9267,-3.0103,0,-31.9267,-3.0103,-31.9267	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:23:0,23,0:0:0:23,0:820,0:-74.1225,-6.92369,0,-74.1225,-6.92369,-74.1225	1/1:347:0,346,0:0:0:346,0:12258,0:-1102.77,-104.156,0,-1102.77,-104.156,-1102.77	1/1:147:0,145,0:0:0:145,0:5118,0:-460.434,-43.6494,0,-460.434,-43.6494,-460.434	1/2:108:0,39,69:0:0:39,69:1371,2393:-306.415,-194.818,-183.078,-111.946,0,-91.1754	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:153:0,77,76:0:0:77,76:2764,2723:-447.892,-222.428,-199.249,-225.822,0,-202.944	1/1:76:0,76,0:0:0:76,0:2690,0:-242.341,-22.8783,0,-242.341,-22.8783,-242.341	1/2:263:0,112,149:0:0:112,149:3953,5203:-744.887,-423.124,-389.408,-321.726,0,-276.872	1/2:218:0,104,113:0:0:104,113:3695,3926:-620.117,-319.155,-287.848,-300.953,0,-266.936	1/1:114:0,113,0:0:0:113,0:4033,0:-362.926,-34.0164,0,-362.926,-34.0164,-362.926	1/1:125:0,125,0:0:0:125,0:4443,0:-400.041,-37.6288,0,-400.041,-37.6288,-400.041	1/1:128:0,128,0:0:0:128,0:4517,0:-406.698,-38.5318,0,-406.698,-38.5318,-406.698	1/1:165:0,164,0:0:0:164,0:5834,0:-524.752,-49.3689,0,-524.752,-49.3689,-524.752	1/1:131:0,131,0:0:0:131,0:4610,0:-414.958,-39.4349,0,-414.958,-39.4349,-414.958	1/2:165:0,72,91:0:0:72,91:2580,3198:-470.712,-260.294,-238.62,-210.452,0,-183.058	1/1:165:0,165,0:0:0:165,0:5852,0:-526.721,-49.67,0,-526.721,-49.67,-526.721	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/2:149:0,59,90:0:0:59,90:2116,3121:-426.522,-253.928,-236.167,-172.948,0,-145.855	1/1:79:0,78,1:0:0:78,1:2776,36:-249.734,-23.4803,0,-246.902,-20.3007,-246.601	1/2:7:0,1,6:0:0:1,6:36,216:-20.9217,-17.9843,-17.6833,-3.29724,0,-1.49106	1/2:186:0,82,104:0:0:82,104:2909,3602:-530.071,-293.069,-268.385,-237.352,0,-206.045	1/1:53:0,52,0:0:0:52,0:1840,0:-165.648,-15.6536,0,-165.648,-15.6536,-165.648	1/2:14:0,4,10:0:0:4,10:144,356:-41.1219,-29.3711,-28.167,-12.1095,0,-9.0992	1/2:9:0,3,6:0:0:3,6:108,208:-26.0686,-17.2519,-16.3488,-9.17208,0,-7.3659	1/1:122:0,121,1:0:0:121,1:4299,36:-386.667,-36.4246,0,-383.73,-33.1274,-383.429	1/1:158:0,155,2:0:0:155,2:5479,72:-492.878,-46.6597,0,-487.003,-40.7848,-486.401	1/2:5:0,1,4:0:0:1,4:36,135:-14.2149,-11.2729,-10.9719,-3.29724,0,-2.09312	1/1:143:0,142,0:0:0:142,0:5047,0:-454.016,-42.7463,0,-454.016,-42.7463,-454.016	1/2:229:0,104,123:0:0:104,123:3705,4293:-651.181,-349.189,-317.882,-302.012,0,-264.985	1/1:75:0,75,0:0:0:75,0:2649,0:-238.645,-22.5773,0,-238.645,-22.5773,-238.645	1/1:126:0,125,0:0:0:125,0:4437,0:-399.141,-37.6288,0,-399.141,-37.6288,-399.141	1/1:347:0,345,0:0:0:345,0:12151,0:-1093.01,-103.855,0,-1093.01,-103.855,-1093.01	1/2:190:0,69,119:0:0:69,119:2480,4080:-533.446,-331.117,-310.346,-202.322,0,-166.499	1/1:37:0,37,0:0:0:37,0:1296,0:-116.938,-11.1381,0,-116.938,-11.1381,-116.938	1/1:55:0,54,0:0:0:54,0:1936,0:-174.157,-16.2556,0,-174.157,-16.2556,-174.157	1/1:115:0,115,0:0:0:115,0:4044,0:-364.123,-34.6185,0,-364.123,-34.6185,-364.123	1/1:25:0,24,0:0:0:24,0:856,0:-77.1239,-7.22472,0,-77.1239,-7.22472,-77.1239	1/2:125:0,45,80:0:0:45,80:1593,2774:-355.555,-225.794,-212.248,-130.112,0,-106.03	1/1:141:0,139,1:0:0:139,1:4930,36:-443.495,-41.8432,0,-440.557,-38.9004,-440.256	1/1:279:0,277,1:0:0:277,1:9779,25:-879.505,-83.3853,0,-877.557,-81.4314,-877.256	1/1:200:0,196,0:0:0:196,0:6974,0:-627.423,-59.0019,0,-627.423,-59.0019,-627.423	1/2:181:0,93,87:0:0:93,87:3313,3033:-516.807,-246.768,-218.772,-270.18,0,-243.99	1/1:181:0,180,0:0:0:180,0:6372,0:-573.164,-54.1854,0,-573.164,-54.1854,-573.164	1/2:40:0,22,18:0:0:22,18:784,634:-115.873,-51.9687,-45.3461,-64.2579,0,-58.8394	1/2:199:0,99,99:0:0:99,99:3544,3493:-573.394,-284.389,-254.587,-289.02,0,-259.218	1/1:125:0,124,0:0:0:124,0:4393,0:-395.178,-37.3277,0,-395.178,-37.3277,-395.178	1/1:297:0,297,0:0:0:297,0:10538,0:-947.881,-89.4059,0,-947.881,-89.4059,-947.881	1/1:127:0,127,0:0:0:127,0:4474,0:-402.725,-38.2308,0,-402.725,-38.2308,-402.725	1/1:130:0,128,0:0:0:128,0:4521,0:-406.714,-38.5318,0,-406.714,-38.5318,-406.714	1/2:160:0,72,88:0:0:72,88:2563,3061:-458.111,-249.217,-227.543,-209.246,0,-182.755	1/1:264:1,261,1:1:21:261,1:9242,34:-829.589,-77.0132,0,-827.132,-75.7792,-828.419	1/2:65:0,30,35:0:0:30,35:1063,1204:-184.716,-98.1154,-89.0845,-86.9499,0,-76.4139	1/1:168:0,165,0:0:0:165,0:5867,0:-527.846,-49.67,0,-527.846,-49.67,-527.846	1/1:133:1,131,0:1:36:131,0:4595,0:-410.119,-36.4975,0,-410.42,-39.4349,-413.357	1/2:76:0,42,34:0:0:42,34:1491,1183:-218.027,-96.5377,-83.8945,-121.841,0,-111.606	1/2:170:1,90,77:1:30:90,77:3202,2701:-478.07,-217.417,-192.722,-258.626,0,-237.844	1/2:175:0,47,125:0:0:47,125:1668,4332:-487.98,-352.075,-337.927,-135.967,0,-98.3379	1/1:133:0,133,0:0:0:133,0:4748,0:-427.477,-40.037,0,-427.477,-40.037,-427.477	1/1:217:1,216,0:1:30:216,0:7629,0:-683.556,-62.3239,0,-683.857,-65.0225,-686.255
chr03	25019036	.	TTA	GTT,GTA	286896	PASS	AB=0.486025,0.511128;ABP=9.56518,7.16667;AC=155,33;AF=0.824468,0.175532;AN=188;AO=10988,1995;CIGAR=1X1M1X,1X2M;DP=13020;DPB=13020;DPRA=0,0.888877;EPP=23164.8,4248.67;EPPR=13.8677;GTI=1;LEN=3,1;MEANALT=1.74468,2.2439;MQM=59.9783,60;MQMR=56.4;NS=94;NUMALT=2;ODDS=2.22521;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=386786,71256;QR=147;RO=5;RPL=10907,1985;RPP=23164.8,4248.67;RPPR=13.8677;RPR=81,10;RUN=1,1;SAF=0,0;SAP=23863.1,4335.1;SAR=10988,1995;SRF=0;SRP=13.8677;SRR=5;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:87:0,43,42:0:0:43,42:1505,1499:-244.644,-122.201,-109.257,-122.437,0,-109.794	1/1:168:0,165,2:0:0:165,2:5813,72:-522.929,-49.67,0,-517.054,-43.7951,-516.452	1/2:115:0,56,59:0:0:56,59:1970,2108:-332.589,-172.228,-155.371,-160.715,0,-142.955	1/1:250:0,248,0:0:0:248,0:8745,0:-786.7,-74.6554,0,-786.7,-74.6554,-786.7	1/1:71:0,71,0:0:0:71,0:2518,0:-226.871,-21.3731,0,-226.871,-21.3731,-226.871	1/1:83:0,83,0:0:0:83,0:2906,0:-261.774,-24.9855,0,-261.774,-24.9855,-261.774	1/1:236:0,235,0:0:0:235,0:8287,0:-745.483,-70.7421,0,-745.483,-70.7421,-745.483	1/1:259:0,259,0:0:0:259,0:9132,0:-821.862,-77.9668,0,-821.862,-77.9668,-821.862	1/1:190:0,189,1:0:0:189,1:6651,36:-598.318,-56.8947,0,-595.381,-53.5974,-595.08	1/2:206:0,100,106:0:0:100,106:3535,3764:-594.956,-307.051,-276.948,-288.259,0,-256.35	1/1:35:0,35,0:0:0:35,0:1205,0:-108.749,-10.5361,0,-108.749,-10.5361,-108.749	1/1:96:0,96,0:0:0:96,0:3350,0:-301.72,-28.8989,0,-301.72,-28.8989,-301.72	1/1:87:0,87,0:0:0:87,0:3080,0:-277.428,-26.1896,0,-277.428,-26.1896,-277.428	1/1:87:0,87,0:0:0:87,0:3072,0:-276.71,-26.1896,0,-276.71,-26.1896,-276.71	1/1:95:0,95,0:0:0:95,0:3392,0:-305.496,-28.5979,0,-305.496,-28.5979,-305.496	1/2:75:0,38,37:0:0:38,37:1335,1332:-217.698,-109.044,-97.6051,-109.009,0,-97.871	1/2:112:0,56,56:0:0:56,56:1946,2003:-321.886,-163.685,-146.827,-158.554,0,-141.696	1/1:70:0,70,0:0:0:70,0:2472,0:-222.733,-21.0721,0,-222.733,-21.0721,-222.733	1/2:35:0,13,22:0:0:13,22:460,788:-102.088,-64.6221,-60.7087,-37.8214,0,-31.1988	1/1:262:0,262,0:0:0:262,0:9159,0:-824.299,-78.8699,0,-824.299,-78.8699,-824.299	1/1:255:0,254,0:0:0:254,0:8972,0:-807.111,-76.4616,0,-807.111,-76.4616,-807.111	1/2:240:0,85,154:0:0:85,154:3002,5524:-695.156,-450.685,-425.097,-244.585,0,-198.226	1/1:202:0,201,0:0:0:201,0:7090,0:-637.887,-60.507,0,-637.887,-60.507,-637.887	1/2:103:0,48,55:0:0:48,55:1676,1966:-296.978,-160.658,-146.208,-136.673,0,-120.117	1/1:92:0,92,0:0:0:92,0:3216,0:-289.662,-27.6948,0,-289.662,-27.6948,-289.662	1/2:502:1,250,249:1:28:250,249:8820,8868:-1438.5,-720.612,-647.573,-716.003,0,-643.265	1/1:427:0,424,0:0:0:424,0:14896,0:-1340.06,-127.637,0,-1340.06,-127.637,-1340.06	1/2:41:0,23,17:0:0:23,17:826,591:-115.425,-48.0378,-41.1141,-67.3803,0,-62.2628	1/1:297:0,295,0:0:0:295,0:10409,0:-936.386,-88.8039,0,-936.386,-88.8039,-936.386	1/1:302:0,293,9:0:0:293,9:10264,320:-923.026,-88.2018,0,-896.948,-61.7687,-894.239	1/1:168:0,168,0:0:0:168,0:5975,0:-537.86,-50.573,0,-537.86,-50.573,-537.86	1/2:12:0,2,10:0:0:2,10:72,356:-35.2464,-29.3709,-28.7689,-6.23466,0,-3.22436	1/2:24:0,13,11:0:0:13,11:451,392:-68.9636,-32.3087,-28.3953,-37.0067,0,-33.6954	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:7:0,7,0:0:0:7,0:231,0:-21.1127,-2.10721,0,-21.1127,-2.10721,-21.1127	1/1:282:0,282,0:0:0:282,0:9932,0:-893.705,-84.8905,0,-893.705,-84.8905,-893.705	1/1:223:0,223,0:0:0:223,0:7769,0:-699.252,-67.1297,0,-699.252,-67.1297,-699.252	1/2:64:0,37,27:0:0:37,27:1307,968:-185.745,-79.3096,-68.1714,-106.792,0,-98.6641	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:194:1,117,76:1:28:117,76:4095,2714:-551.991,-219.127,-186.124,-331.02,0,-310.36	1/1:27:0,27,0:0:0:27,0:945,0:-85.3633,-8.12781,0,-85.3633,-8.12781,-85.3633	1/2:134:1,66,67:1:36:66,67:2330,2400:-382.226,-192.791,-175.86,-186.795,0,-169.564	1/2:109:1,58,50:1:21:58,50:2079,1784:-313.258,-143.996,-128.119,-168.125,0,-154.657	1/1:71:0,71,0:0:0:71,0:2500,0:-225.253,-21.3731,0,-225.253,-21.3731,-225.253	1/1:178:0,178,0:0:0:178,0:6225,0:-560.356,-53.5833,0,-560.356,-53.5833,-560.356	1/1:182:0,182,0:0:0:182,0:6348,0:-571.424,-54.7875,0,-571.424,-54.7875,-571.424	1/1:407:0,406,0:0:0:406,0:14303,0:-1286.71,-122.218,0,-1286.71,-122.218,-1286.71	1/1:205:0,205,0:0:0:205,0:7254,0:-652.919,-61.7112,0,-652.919,-61.7112,-652.919	1/1:142:0,140,2:0:0:140,2:4910,68:-441.717,-42.1442,0,-436.201,-36.2886,-435.599	1/1:269:0,267,1:0:0:267,1:9461,36:-851.096,-80.375,0,-848.159,-77.4376,-847.858	1/1:7:0,7,0:0:0:7,0:250,0:-22.8467,-2.10721,0,-22.8467,-2.10721,-22.8467	1/2:127:1,71,55:1:34:71,55:2523,1946:-361.051,-155.758,-137.142,-202.851,0,-189.052	1/1:47:0,47,0:0:0:47,0:1635,0:-147.435,-14.1484,0,-147.435,-14.1484,-147.435	1/2:20:0,8,12:0:0:8,12:288,424:-58.3861,-34.8841,-32.4758,-23.8592,0,-20.2468	1/2:131:0,62,69:0:0:62,69:2202,2455:-379.858,-200.432,-181.768,-179.781,0,-159.01	1/1:118:0,116,0:0:0:116,0:4086,0:-367.57,-34.9195,0,-367.57,-34.9195,-367.57	1/2:10:0,7,3:0:0:7,3:247,108:-29.2804,-9.17208,-7.06487,-20.466,0,-19.5629	1/2:27:0,20,7:0:0:20,7:701,248:-77.5966,-20.557,-14.5364,-57.3928,0,-55.2856	1/1:90:0,90,0:0:0:90,0:3198,0:-288.043,-27.0927,0,-288.043,-27.0927,-288.043	1/1:128:0,125,1:0:0:125,1:4402,36:-395.995,-37.6288,0,-393.057,-34.6913,-392.756	1/2:11:0,5,6:0:0:5,6:162,216:-31.0384,-17.9843,-16.4792,-13.3943,0,-11.5881	1/1:269:0,268,0:0:0:268,0:9450,0:-850.189,-80.676,0,-850.189,-80.676,-850.189	1/2:279:0,132,147:0:0:132,147:4628,5276:-807.322,-430.723,-390.987,-376.954,0,-332.702	1/1:138:0,137,0:0:0:137,0:4812,0:-432.901,-41.2411,0,-432.901,-41.2411,-432.901	1/1:106:0,106,0:0:0:106,0:3738,0:-336.623,-31.9092,0,-336.623,-31.9092,-336.623	1/1:261:0,259,0:0:0:259,0:9117,0:-820.185,-77.9668,0,-820.185,-77.9668,-820.185	1/2:223:0,89,134:0:0:89,134:3128,4768:-643.543,-388.939,-362.147,-254.957,0,-214.619	1/1:22:0,22,0:0:0:22,0:760,0:-68.7176,-6.62266,0,-68.7176,-6.62266,-68.7176	1/1:125:0,124,1:0:0:124,1:4392,36:-395.098,-37.3277,0,-392.16,-34.0305,-391.859	1/1:149:0,148,0:0:0:148,0:5151,0:-463.448,-44.5524,0,-463.448,-44.5524,-463.448	1/1:34:0,34,0:0:0:34,0:1148,0:-103.617,-10.235,0,-103.617,-10.235,-103.617	1/2:157:0,77,80:0:0:77,80:2693,2856:-452.277,-233.194,-210.015,-219.435,0,-195.353	1/1:84:0,84,0:0:0:84,0:2921,0:-263.122,-25.2865,0,-263.122,-25.2865,-263.122	1/1:288:0,288,0:0:0:288,0:10089,0:-907.968,-86.6966,0,-907.968,-86.6966,-907.968	1/1:136:0,136,0:0:0:136,0:4813,0:-433.328,-40.9401,0,-433.328,-40.9401,-433.328	1/2:330:0,165,165:0:0:165,165:5838,5899:-956.862,-481.35,-431.68,-475.867,0,-426.197	1/1:117:0,113,3:0:0:113,3:3987,108:-358.664,-34.0164,0,-349.851,-25.2041,-348.948	1/2:27:0,10,17:0:0:10,17:355,612:-79.2193,-50.2959,-47.2856,-29.2801,0,-24.1626	1/2:144:0,87,57:0:0:87,57:3050,2052:-415.976,-167.793,-141.603,-248.54,0,-231.381	1/1:158:0,158,0:0:0:158,0:5529,0:-497.74,-47.5627,0,-497.74,-47.5627,-497.74	1/1:326:0,326,0:0:0:326,0:11539,0:-1038.4,-98.1358,0,-1038.4,-98.1358,-1038.4	1/1:157:0,157,0:0:0:157,0:5538,0:-498.538,-47.2617,0,-498.538,-47.2617,-498.538	1/1:74:0,74,0:0:0:74,0:2632,0:-237.128,-22.2762,0,-237.128,-22.2762,-237.128	1/2:121:0,60,61:0:0:60,61:2129,2192:-352.642,-179.183,-161.121,-173.816,0,-155.453	1/1:193:0,192,0:0:0:192,0:6771,0:-609.103,-57.7978,0,-609.103,-57.7978,-609.103	1/2:44:0,20,24:0:0:20,24:693,860:-126.815,-70.4971,-64.4765,-56.6692,0,-49.4445	1/1:98:0,98,0:0:0:98,0:3432,0:-309.095,-29.5009,0,-309.095,-29.5009,-309.095	1/1:63:0,63,0:0:0:63,0:2244,0:-202.223,-18.9649,0,-202.223,-18.9649,-202.223	1/2:24:0,10,14:0:0:10,14:360,504:-70.8578,-41.4837,-38.4734,-29.734,0,-25.5196	1/2:53:0,14,39:0:0:14,39:498,1400:-155.144,-114.559,-110.345,-40.9411,0,-29.2009	1/2:83:0,36,47:0:0:36,47:1227,1671:-236.071,-136.528,-125.691,-99.8898,0,-85.7414	1/1:107:0,105,0:0:0:105,0:3719,0:-334.594,-31.6082,0,-334.594,-31.6082,-334.594	1/1:119:0,119,0:0:0:119,0:4208,0:-378.904,-35.8226,0,-378.904,-35.8226,-378.904
chr03	25099647	.	GGGT	CGGC,CGGT	217883	PASS	AB=0.472822,0.524572;ABP=20.243,17.0966;AC=151,33;AF=0.820652,0.179348;AN=184;AO=8496,1419;CIGAR=1X2M1X,1X3M;DP=9929;DPB=9942.75;DPRA=0,0.817405;EPP=18443.2,3084.33;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.58696,2.2;MQM=59.411,59.9598;MQMR=0;NS=92;NUMALT=2;ODDS=2.55893;PAIRED=0,0;PAIREDR=0;PAO=11,11;PQA=386,386;PQR=448;PRO=20;QA=301281,50259;QR=0;RO=0;RPL=8495,0;RPP=18443.2,3084.33;RPPR=0;RPR=1,1419;RUN=1,1;SAF=0,0;SAP=18451.8,3084.33;SAR=8496,1419;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,31,8:0:0:31,8:1110,288:-114.362,-23.8592,-14.5272,-90.8621,0,-88.4539	1/1:102:0,101,0:0:0:101,0:3576,0:-321.577,-30.404,0,-321.577,-30.404,-321.577	1/2:83:0,37,46:0:0:37,46:1318,1634:-240.904,-133.5,-122.362,-107.76,0,-93.9127	1/1:277:0,277,0:0:0:277,0:9813,0:-881.948,-83.3853,0,-881.948,-83.3853,-881.948	1/1:94:0,94,0:0:0:94,0:3355,0:-302.128,-28.2968,0,-302.128,-28.2968,-302.128	1/1:58:0,58,0:0:0:58,0:2036,0:-183.123,-17.4597,0,-183.123,-17.4597,-183.123	1/1:163:0,163,0:0:0:163,0:5784,0:-520.49,-49.0679,0,-520.49,-49.0679,-520.49	1/1:216:0,216,0:0:0:216,0:7664,0:-689.164,-65.0225,0,-689.164,-65.0225,-689.164	1/1:104:0,103,1:0:0:103,1:3655,36:-328.59,-31.0061,0,-325.653,-27.7088,-325.352	1/2:137:0,60,76:0:0:60,76:2129,2708:-394.2,-220.834,-202.772,-173.469,0,-150.59	1/1:33:0,33,0:0:0:33,0:1169,0:-105.504,-9.93399,0,-105.504,-9.93399,-105.504	1/1:83:0,83,0:0:0:83,0:2949,0:-265.566,-24.9855,0,-265.566,-24.9855,-265.566	1/1:82:0,82,0:0:0:82,0:2885,0:-258.892,-24.6845,0,-258.892,-24.6845,-258.892	1/1:52:0,52,0:0:0:52,0:1833,0:-165.196,-15.6536,0,-165.196,-15.6536,-165.196	1/1:75:0,75,0:0:0:75,0:2680,0:-241.363,-22.5773,0,-241.363,-22.5773,-241.363	1/2:69:0,38,31:0:0:38,31:1355,1091:-199.402,-89.1668,-77.7277,-110.589,0,-101.257	1/2:68:0,37,31:0:0:37,31:1324,1099:-197.824,-89.8875,-78.7494,-108.293,0,-98.9608	1/1:87:0,87,0:0:0:87,0:3103,0:-279.372,-26.1896,0,-279.372,-26.1896,-279.372	1/2:46:0,19,27:0:0:19,27:682,914:-130.075,-74.4354,-68.7159,-55.9903,0,-47.8625	1/1:229:0,229,0:0:0:229,0:8126,0:-731.183,-68.9359,0,-731.183,-68.9359,-731.183	1/1:171:0,171,0:0:0:171,0:6048,0:-544.334,-51.4761,0,-544.334,-51.4761,-544.334	1/2:182:0,76,106:0:0:76,106:2683,3772:-526.09,-307.705,-284.826,-218.674,0,-186.765	1/1:88:0,88,0:0:0:88,0:3114,0:-279.918,-26.4906,0,-279.918,-26.4906,-279.918	1/2:100:0,51,49:0:0:51,49:1805,1742:-289.323,-142.312,-126.96,-147.365,0,-132.614	1/1:75:0,75,0:0:0:75,0:2653,0:-238.961,-22.5773,0,-238.961,-22.5773,-238.961	1/2:328:0,157,169:0:0:157,169:5575,6009:-943.938,-489.737,-442.475,-454.25,0,-403.376	1/1:248:0,248,0:0:0:248,0:8827,0:-793.479,-74.6554,0,-793.479,-74.6554,-793.479	1/2:46:0,24,22:0:0:24,22:838,758:-130.067,-61.9024,-54.6777,-68.5116,0,-61.889	1/1:429:0,428,0:0:0:428,0:15142,0:-1361.63,-128.841,0,-1361.63,-128.841,-1361.63	1/1:100:0,98,2:0:0:98,2:3486,72:-313.581,-29.5009,0,-307.707,-23.2663,-307.104	1/1:132:0,132,0:0:0:132,0:4689,0:-422.062,-39.736,0,-422.062,-39.736,-422.062	1/2:7:0,2,5:0:0:2,5:70,176:-20.3747,-14.6799,-14.0778,-6.04527,0,-4.54012	1/2:9:0,3,6:0:0:3,6:108,203:-25.6145,-16.795,-15.8919,-9.17208,0,-7.3659	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	.:.:.:.:.:.:.:.	1/1:3:0,3,0:0:0:3,0:102,0:-9.49698,-0.90309,0,-9.49698,-0.90309,-9.49698	1/1:191:0,191,0:0:0:191,0:6789,0:-610.994,-57.4967,0,-610.994,-57.4967,-610.994	1/1:200:0,200,0:0:0:200,0:7065,0:-634.995,-60.206,0,-634.995,-60.206,-634.995	1/2:86:0,37,49:0:0:37,49:1309,1742:-248.927,-142.314,-131.176,-106.968,0,-92.2172	.:.:.:.:.:.:.:.	1/2:168:0,115,52:0:0:115,52:4051,1856:-481.005,-151.387,-116.768,-329.694,0,-314.04	1/1:46:0,46,0:0:0:46,0:1648,0:-147.952,-13.8474,0,-147.952,-13.8474,-147.952	1/2:129:0,66,63:0:0:66,63:2323,2226:-370.668,-181.574,-161.706,-189.379,0,-170.415	1/2:79:0,40,39:0:0:40,39:1421,1387:-229.16,-113.388,-101.347,-116.127,0,-104.387	1/1:72:0,72,0:0:0:72,0:2540,0:-228.816,-21.6742,0,-228.816,-21.6742,-228.816	1/1:135:0,135,0:0:0:135,0:4789,0:-431.141,-40.6391,0,-431.141,-40.6391,-431.141	1/1:112:0,111,0:0:0:111,0:3962,0:-356.335,-33.4143,0,-356.335,-33.4143,-356.335	1/1:256:0,254,1:0:0:254,1:8968,36:-806.641,-76.4616,0,-803.703,-73.5242,-803.402	1/1:88:0,88,0:0:0:88,0:3093,0:-278.091,-26.4906,0,-278.091,-26.4906,-278.091	1/1:152:0,152,0:0:0:152,0:5407,0:-486.363,-45.7566,0,-486.363,-45.7566,-486.363	1/1:165:0,165,0:0:0:165,0:5831,0:-524.421,-49.67,0,-524.421,-49.67,-524.421	1/1:2:0,2,0:0:0:2,0:71,0:-6.74206,-0.60206,0,-6.74206,-0.60206,-6.74206	1/2:105:0,49,56:0:0:49,56:1760,1995:-306.073,-162.547,-147.796,-143.466,0,-126.608	1/1:47:0,47,0:0:0:47,0:1665,0:-150.107,-14.1484,0,-150.107,-14.1484,-150.107	1/2:17:0,4,12:0:0:4,12:143,428:-46.6363,-34.9883,-33.7842,-11.7316,0,-8.1192	1/2:82:0,37,45:0:0:37,45:1311,1580:-234.696,-128.94,-117.802,-106.107,0,-92.5608	1/1:92:0,92,0:0:0:92,0:3243,0:-292.002,-27.6948,0,-292.002,-27.6948,-292.002	1/2:12:0,3,9:0:0:3,9:107,307:-33.9774,-25.251,-24.3479,-9.07908,0,-6.36981	1/2:19:0,5,14:0:0:5,14:173,500:-55.1774,-41.1218,-39.6166,-14.4044,0,-10.19	1/1:67:0,67,0:0:0:67,0:2386,0:-214.952,-20.169,0,-214.952,-20.169,-214.952	1/1:82:0,82,0:0:0:82,0:2906,0:-261.757,-24.6845,0,-261.757,-24.6845,-261.757	1/2:5:0,3,2:0:0:3,2:108,68:-14.6799,-5.85565,-4.95256,-9.17208,0,-8.57002	1/1:349:0,348,0:0:0:348,0:12362,0:-1112.08,-104.758,0,-1112.08,-104.758,-1112.08	1/2:52:0,19,33:0:0:19,33:683,1179:-152.195,-96.4832,-90.7637,-56.0699,0,-46.1359	1/1:28:0,28,0:0:0:28,0:998,0:-90.12,-8.42884,0,-90.12,-8.42884,-90.12	1/1:116:0,116,0:0:0:116,0:4017,0:-361.224,-34.9195,0,-361.224,-34.9195,-361.224	1/1:187:0,185,2:0:0:185,2:6600,68:-593.599,-55.6906,0,-588.083,-50.2149,-587.481	1/2:62:0,22,40:0:0:22,40:761,1422:-178.057,-116.235,-109.612,-62.1714,0,-50.1302	1/1:15:0,15,0:0:0:15,0:533,0:-48.2247,-4.51545,0,-48.2247,-4.51545,-48.2247	1/1:110:0,110,0:0:0:110,0:3903,0:-351.435,-33.1133,0,-351.435,-33.1133,-351.435	1/1:61:0,61,0:0:0:61,0:2178,0:-196.101,-18.3628,0,-196.101,-18.3628,-196.101	1/1:20:0,20,0:0:0:20,0:712,0:-64.4004,-6.0206,0,-64.4004,-6.0206,-64.4004	1/2:61:0,10,51:0:0:10,51:352,1815:-176.934,-148.279,-145.269,-29.0073,0,-13.6548	1/1:79:0,79,0:0:0:79,0:2805,0:-252.552,-23.7814,0,-252.552,-23.7814,-252.552	1/1:121:0,121,0:0:0:121,0:4310,0:-387.992,-36.4246,0,-387.992,-36.4246,-387.992	1/1:205:0,205,0:0:0:205,0:7272,0:-654.491,-61.7112,0,-654.491,-61.7112,-654.491	1/2:167:0,85,82:0:0:85,82:2982,2916:-480.032,-237.57,-211.983,-242.396,0,-217.712	1/1:141:0,140,1:0:0:140,1:4998,36:-449.512,-42.1442,0,-446.574,-38.847,-446.273	1/2:26:0,12,14:0:0:12,14:424,504:-75.9759,-41.4837,-37.8713,-34.8483,0,-30.6339	1/2:144:0,76,68:0:0:76,68:2681,2400:-414.04,-195.786,-172.907,-218.607,0,-198.137	1/1:197:0,195,2:0:0:195,2:6954,53:-625.599,-58.7009,0,-621.432,-54.2686,-620.83	1/1:276:0,275,0:0:0:275,0:9777,0:-879.476,-82.7833,0,-879.476,-82.7833,-879.476	1/1:81:0,80,0:0:0:80,0:2836,0:-255.074,-24.0824,0,-255.074,-24.0824,-255.074	1/1:70:0,70,0:0:0:70,0:2489,0:-224.185,-21.0721,0,-224.185,-21.0721,-224.185	1/2:109:0,53,56:0:0:53,56:1865,1933:-308.975,-157.375,-141.421,-151.948,0,-135.09	1/1:162:0,161,1:0:0:161,1:5722,36:-514.681,-48.4658,0,-511.743,-45.5485,-511.442	1/2:53:0,29,23:0:0:29,23:1043,828:-152.784,-67.6857,-58.9558,-85.2212,0,-78.2976	1/1:73:0,73,0:0:0:73,0:2556,0:-230.195,-21.9752,0,-230.195,-21.9752,-230.195	1/1:75:0,75,0:0:0:75,0:2680,0:-241.287,-22.5773,0,-241.287,-22.5773,-241.287	1/2:45:0,23,21:0:0:23,21:827,752:-128.882,-61.4251,-54.5014,-67.5581,0,-61.2365	1/2:64:0,22,42:0:0:22,42:776,1470:-183.089,-119.949,-113.326,-63.4921,0,-50.8488	1/2:87:0,25,62:0:0:25,62:881,2220:-253.086,-181.401,-173.875,-72.0394,0,-53.3756	1/1:144:0,144,0:0:0:144,0:5091,0:-458.171,-43.3483,0,-458.171,-43.3483,-458.171	1/1:120:0,120,0:0:0:120,0:4278,0:-384.919,-36.1236,0,-384.919,-36.1236,-384.919
chr03	25226100	.	TAAA	CAAA,CAAC	218683	PASS	AB=0.473009,0.52193;ABP=21.7653,15.3915;AC=154,34;AF=0.819149,0.180851;AN=188;AO=8208,1567;CIGAR=1X3M,1X2M1X;DP=9830;DPB=9830;DPRA=105.688,0.871904;EPP=17420.6,3310.83;EPPR=0;GTI=1;LEN=1,4;MEANALT=1.91398,2.42857;MQM=59.953,59.9202;MQMR=0;NS=94;NUMALT=2;ODDS=1.45031;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=293284,55323;QR=0;RO=0;RPL=8161,1556;RPP=17420.6,3310.83;RPPR=0;RPR=47,11;RUN=1,1;SAF=0,0;SAP=17826.5,3405.71;SAR=8208,1567;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,10,21:0:0:10,21:356,735:-88.8073,-59.7905,-56.7802,-29.0115,0,-22.6899	1/1:165:0,165,0:0:0:165,0:5896,0:-530.701,-49.67,0,-530.701,-49.67,-530.701	1/2:202:0,101,100:0:0:101,100:3628,3531:-583.581,-287.616,-257.212,-296.039,0,-265.936	1/1:262:0,260,0:0:0:260,0:9264,0:-833.439,-78.2678,0,-833.439,-78.2678,-833.439	1/1:52:0,51,1:0:0:51,1:1813,36:-163.09,-15.3525,0,-160.152,-12.0553,-159.851	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/1:165:0,161,0:0:0:161,0:5746,0:-516.872,-48.4658,0,-516.872,-48.4658,-516.872	1/1:187:0,184,2:0:0:184,2:6584,61:-592.352,-55.3895,0,-587.466,-50.4659,-586.864	1/1:116:0,112,0:0:0:112,0:3994,0:-359.315,-33.7154,0,-359.315,-33.7154,-359.315	1/2:161:0,75,86:0:0:75,86:2688,3040:-467.165,-247.942,-225.365,-219.579,0,-193.691	1/1:54:0,54,0:0:0:54,0:1940,0:-174.876,-16.2556,0,-174.876,-16.2556,-174.876	1/1:86:0,85,0:0:0:85,0:3047,0:-274.155,-25.5876,0,-274.155,-25.5876,-274.155	1/1:86:0,86,0:0:0:86,0:3096,0:-278.844,-25.8886,0,-278.844,-25.8886,-278.844	1/1:78:0,78,0:0:0:78,0:2787,0:-251.07,-23.4803,0,-251.07,-23.4803,-251.07	1/1:90:0,90,0:0:0:90,0:3225,0:-290.47,-27.0927,0,-290.47,-27.0927,-290.47	1/2:60:0,32,28:0:0:32,28:1152,1001:-175.975,-81.9765,-72.3435,-94.3572,0,-85.9283	1/2:94:0,50,44:0:0:50,44:1779,1526:-269.372,-124.382,-109.33,-145.341,0,-132.095	1/1:87:0,86,0:0:0:86,0:3058,0:-275.087,-25.8886,0,-275.087,-25.8886,-275.087	1/2:41:0,20,21:0:0:20,21:720,749:-120.157,-61.4067,-55.3861,-59.1082,0,-52.7865	1/1:204:0,203,0:0:0:203,0:7263,0:-653.407,-61.1091,0,-653.407,-61.1091,-653.407	1/1:115:0,114,0:0:0:114,0:4064,0:-365.742,-34.3174,0,-365.742,-34.3174,-365.742	1/2:95:0,21,74:0:0:21,74:752,2633:-276.269,-214.942,-208.62,-61.6846,0,-39.4084	1/1:59:0,58,0:0:0:58,0:2063,0:-185.591,-17.4597,0,-185.591,-17.4597,-185.591	1/2:115:0,64,51:0:0:64,51:2304,1813:-336.082,-148.085,-128.819,-188.355,0,-173.002	1/1:73:0,73,0:0:0:73,0:2612,0:-235.328,-21.9752,0,-235.328,-21.9752,-235.328	1/2:320:0,139,180:0:0:139,180:4956,6265:-913.212,-509.219,-467.376,-403.986,0,-349.801	1/1:227:0,227,0:0:0:227,0:8116,0:-730.455,-68.3338,0,-730.455,-68.3338,-730.455	1/2:45:0,17,28:0:0:17,28:604,990:-130.203,-80.984,-75.8665,-49.5731,0,-41.1443	1/1:394:0,392,0:0:0:392,0:14016,0:-1260.9,-118.004,0,-1260.9,-118.004,-1260.9	1/1:122:0,119,3:0:0:119,3:4256,108:-382.859,-35.8226,0,-374.047,-26.6505,-373.144	1/1:217:0,217,0:0:0:217,0:7731,0:-695.821,-65.3235,0,-695.821,-65.3235,-695.821	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/2:23:0,14,9:0:0:14,9:504,323:-67.8303,-26.7058,-22.4914,-41.4837,0,-38.7744	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:17:0,17,0:0:0:17,0:604,0:-54.6906,-5.11751,0,-54.6906,-5.11751,-54.6906	1/1:248:0,246,0:0:0:246,0:8795,0:-791.176,-74.0534,0,-791.176,-74.0534,-791.176	1/1:161:0,158,0:0:0:158,0:5661,0:-509.335,-47.5627,0,-509.335,-47.5627,-509.335	1/2:65:0,37,26:0:0:37,26:1323,933:-184.054,-76.176,-65.0379,-107.949,0,-100.123	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:168:0,92,75:0:0:92,75:3270,2688:-485.704,-219.238,-191.543,-266.474,0,-243.896	1/1:56:0,56,0:0:0:56,0:2004,0:-180.634,-16.8577,0,-180.634,-16.8577,-180.634	1/2:80:0,51,29:0:0:51,29:1831,1006:-231.482,-82.1182,-66.7657,-149.715,0,-140.985	1/2:80:0,39,41:0:0:39,41:1404,1472:-234.986,-120.434,-108.694,-114.911,0,-102.569	1/1:101:0,99,0:0:0:99,0:3564,0:-320.606,-29.802,0,-320.606,-29.802,-320.606	1/1:144:0,144,0:0:0:144,0:5171,0:-465.528,-43.3483,0,-465.528,-43.3483,-465.528	1/1:154:0,153,0:0:0:153,0:5482,0:-493.273,-46.0576,0,-493.273,-46.0576,-493.273	1/1:130:0,127,0:0:0:127,0:4530,0:-407.505,-38.2308,0,-407.505,-38.2308,-407.505	1/1:131:0,131,0:0:0:131,0:4656,0:-419.203,-39.4349,0,-419.203,-39.4349,-419.203	1/1:131:0,129,0:0:0:129,0:4632,0:-416.682,-38.8329,0,-416.682,-38.8329,-416.682	1/1:44:0,44,0:0:0:44,0:1539,0:-138.797,-13.2453,0,-138.797,-13.2453,-138.797	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:118:0,62,56:0:0:62,56:2224,1984:-343.356,-161.974,-143.311,-181.738,0,-164.88	1/1:49:0,49,0:0:0:49,0:1764,0:-159.039,-14.7505,0,-159.039,-14.7505,-159.039	1/2:19:0,12,7:0:0:12,7:432,248:-55.8096,-20.557,-16.9446,-35.6088,0,-33.5016	1/2:155:0,65,89:0:0:65,89:2336,3149:-447.061,-256.485,-236.918,-190.572,0,-163.781	1/1:62:0,59,3:0:0:59,3:2093,107:-188.282,-17.7608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chr03	25226495	.	AAGTG	GAGTG,GAGTT	113330	PASS	AB=0.518285,0.476671;ABP=7.61612,10.5078;AC=155,33;AF=0.824468,0.175532;AN=188;AO=4409,763;CIGAR=1X4M,1X3M1X;DP=5198;DPB=5198;DPRA=0,0.867008;EPP=9577.03,1659.84;EPPR=5.18177;GTI=2;LEN=1,5;MEANALT=1.64894,2.25641;MQM=59.9925,59.9607;MQMR=60;NS=94;NUMALT=2;ODDS=0.176936;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=157032,26711;QR=36;RO=1;RPL=0,0;RPP=9577.03,1659.84;RPPR=5.18177;RPR=4409,763;RUN=1,1;SAF=0,0;SAP=9577.03,1659.84;SAR=4409,763;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:31:0,17,14:0:0:17,14:608,471:-88.0826,-38.4949,-33.3773,-49.9336,0,-45.7192	1/1:71:0,70,0:0:0:70,0:2506,0:-225.433,-21.0721,0,-225.433,-21.0721,-225.433	1/2:72:0,37,35:0:0:37,35:1305,1226:-206.367,-100.107,-88.9691,-106.611,0,-96.0752	1/1:136:0,135,0:0:0:135,0:4793,0:-431.257,-40.6391,0,-431.257,-40.6391,-431.257	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/1:28:0,27,1:0:0:27,1:956,31:-86.0442,-8.12781,0,-83.5573,-5.32939,-83.2563	1/1:48:0,48,0:0:0:48,0:1706,0:-153.824,-14.4494,0,-153.824,-14.4494,-153.824	1/1:99:0,96,1:0:0:96,1:3423,35:-307.928,-28.8989,0,-305.08,-26.0545,-304.779	1/1:36:0,36,0:0:0:36,0:1281,0:-115.591,-10.8371,0,-115.591,-10.8371,-115.591	1/2:61:0,36,24:0:0:36,24:1277,829:-171.385,-67.3405,-56.5034,-104.034,0,-96.8096	1/1:42:0,41,0:0:0:41,0:1451,0:-130.535,-12.3422,0,-130.535,-12.3422,-130.535	1/1:36:0,36,0:0:0:36,0:1255,0:-113.249,-10.8371,0,-113.249,-10.8371,-113.249	1/1:46:0,46,0:0:0:46,0:1647,0:-148.518,-13.8474,0,-148.518,-13.8474,-148.518	1/1:46:0,46,0:0:0:46,0:1647,0:-148.518,-13.8474,0,-148.518,-13.8474,-148.518	1/1:39:0,39,0:0:0:39,0:1387,0:-125.129,-11.7402,0,-125.129,-11.7402,-125.129	1/2:31:0,17,14:0:0:17,14:608,494:-90.1583,-40.5787,-35.4612,-49.9345,0,-45.7201	1/2:29:0,16,13:0:0:16,13:572,461:-84.5536,-37.9124,-33.0959,-46.9969,0,-43.0836	1/1:43:0,43,0:0:0:43,0:1520,0:-137.09,-12.9443,0,-137.09,-12.9443,-137.09	1/2:35:0,13,22:0:0:13,22:460,773:-100.738,-63.2687,-59.3553,-37.822,0,-31.1993	1/1:134:0,134,0:0:0:134,0:4773,0:-429.727,-40.338,0,-429.727,-40.338,-429.727	1/1:54:0,54,0:0:0:54,0:1936,0:-174.516,-16.2556,0,-174.516,-16.2556,-174.516	1/2:94:0,40,53:0:0:40,53:1436,1856:-268.147,-151.006,-138.965,-117.137,0,-101.182	1/1:50:0,50,0:0:0:50,0:1759,0:-158.591,-15.0515,0,-158.591,-15.0515,-158.591	1/2:60:0,40,20:0:0:40,20:1421,711:-174.085,-58.2958,-46.2546,-116.144,0,-110.124	1/1:55:0,55,0:0:0:55,0:1947,0:-175.505,-16.5567,0,-175.505,-16.5567,-175.505	1/2:162:0,81,80:0:0:81,80:2912,2805:-465.847,-228.271,-203.888,-237.591,0,-213.509	1/1:132:0,132,0:0:0:132,0:4690,0:-422.262,-39.736,0,-422.262,-39.736,-422.262	1/2:17:0,10,7:0:0:10,7:352,246:-49.0312,-20.3748,-17.3645,-29.0079,0,-26.9007	1/1:196:0,196,0:0:0:196,0:6975,0:-627.817,-59.0019,0,-627.817,-59.0019,-627.817	1/1:74:0,72,2:0:0:72,2:2565,72:-230.739,-21.6742,0,-224.864,-15.4395,-224.262	1/1:74:0,74,0:0:0:74,0:2644,0:-238.207,-22.2762,0,-238.207,-22.2762,-238.207	1/2:4:0,3,1:0:0:3,1:108,35:-12.0173,-3.1976,-2.29451,-9.17208,0,-8.87105	1/2:8:0,6,2:0:0:6,2:216,72:-23.8592,-6.23466,-4.42848,-17.9843,0,-17.3823	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:115:0,115,0:0:0:115,0:4102,0:-369.363,-34.6185,0,-369.363,-34.6185,-369.363	1/1:140:1,139,0:1:36:139,0:4961,0:-443.041,-38.5459,0,-443.342,-41.8432,-446.279	1/2:33:0,14,19:0:0:14,19:504,665:-95.5827,-54.4546,-50.2402,-41.4837,0,-35.7641	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:105:0,50,55:0:0:50,55:1796,1924:-303.395,-156.879,-141.827,-146.871,0,-130.314	1/1:19:0,19,0:0:0:19,0:669,0:-60.5339,-5.71957,0,-60.5339,-5.71957,-60.5339	1/2:50:0,24,26:0:0:24,26:849,923:-144.711,-75.5611,-68.3363,-69.504,0,-61.6772	1/2:36:0,21,14:0:0:21,14:756,496:-102.167,-40.4749,-34.1532,-61.762,0,-57.5476	1/1:38:0,38,0:0:0:38,0:1333,0:-120.268,-11.4391,0,-120.268,-11.4391,-120.268	1/1:36:0,36,0:0:0:36,0:1272,0:-114.783,-10.8371,0,-114.783,-10.8371,-114.783	1/1:68:0,68,0:0:0:68,0:2384,0:-214.814,-20.47,0,-214.814,-20.47,-214.814	1/1:77:0,75,1:0:0:75,1:2660,35:-239.287,-22.5773,0,-236.439,-19.7345,-236.138	1/1:65:0,65,0:0:0:65,0:2319,0:-208.97,-19.567,0,-208.97,-19.567,-208.97	1/1:71:0,71,0:0:0:71,0:2536,0:-228.491,-21.3731,0,-228.491,-21.3731,-228.491	1/1:115:0,114,0:0:0:114,0:4024,0:-362.06,-34.3174,0,-362.06,-34.3174,-362.06	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:80:0,35,45:0:0:35,45:1247,1579:-230.498,-128.854,-118.318,-101.998,0,-88.4517	1/1:18:0,18,0:0:0:18,0:635,0:-57.477,-5.41854,0,-57.477,-5.41854,-57.477	1/2:8:0,4,4:0:0:4,4:144,141:-23.5863,-11.8329,-10.6288,-12.1095,0,-10.9054	1/2:74:0,40,34:0:0:40,34:1417,1184:-212.061,-96.6277,-84.5865,-115.784,0,-105.549	1/1:23:0,22,0:0:0:22,0:788,0:-70.885,-6.62266,0,-70.885,-6.62266,-70.885	1/2:6:0,1,5:0:0:1,5:36,178:-17.8016,-14.8635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chr03	25238368	.	G	A	31042.1	PASS	AB=0.465603;ABP=33.9327;AC=33;AF=0.175532;AN=188;AO=1424;CIGAR=1X;DP=9492;DPB=9492;DPRA=0.885965;EPP=19.5037;EPPR=79.2229;GTI=1;LEN=1;MEANALT=1.04878;MQM=59.9228;MQMR=59.9678;NS=94;NUMALT=1;ODDS=9.43276;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50721;QR=287231;RO=8064;RPL=660;RPP=19.5037;RPPR=79.2229;RPR=764;RUN=1;SAF=0;SAP=3095.19;SAR=1424;SRF=0;SRP=17513.8;SRR=8064;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:147:147,0:147:5247:0:0:0,-44.2514,-472.357	0/1:134:67,67:67:2383:67:2362:-172.498,0,-174.386	0/0:141:141,0:141:5022:0:0:0,-42.4452,-452.124	0/0:80:79,1:79:2794:1:36:0,-20.4841,-248.103	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:142:75,67:75:2675:67:2404:-173.87,0,-198.249	0/0:147:147,0:147:5225:0:0:0,-44.2514,-470.39	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:79:39,40:39:1370:40:1432:-105.396,0,-99.8157	0/0:86:86,0:86:3044:0:0:0,-25.8886,-274.187	0/0:88:88,0:88:3124:0:0:0,-26.4906,-281.386	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.906	0/0:103:103,0:103:3620:0:0:0,-31.0061,-326.003	0/0:85:85,0:85:3024:0:0:0,-25.5875,-272.392	0/1:71:38,33:38:1347:33:1179:-85.0441,0,-100.156	0/1:134:91,43:91:3260:43:1529:-97.5641,0,-253.283	0/0:85:84,1:84:2990:1:36:0,-21.9893,-265.734	0/1:70:37,33:37:1328:33:1169:-84.4371,0,-98.7501	0/0:189:189,0:189:6766:0:0:0,-56.8947,-608.88	0/0:132:132,0:132:4701:0:0:0,-39.736,-423.25	0/1:107:27,80:27:960:80:2860:-225.371,0,-54.5061	0/0:92:92,0:92:3260:0:0:0,-27.6948,-293.621	0/1:77:51,26:51:1808:26:932:-61.0196,0,-139.799	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:292:160,132:160:5701:132:4702:-335.44,0,-425.307	0/0:140:140,0:140:4978:0:0:0,-42.1442,-448.166	0/1:73:37,36:37:1323:36:1283:-93.7974,0,-97.3961	0/0:200:200,0:200:7150:0:0:0,-60.206,-643.555	0/0:85:82,3:82:2936:3:108:0,-15.5124,-254.396	0/0:158:158,0:158:5650:0:0:0,-47.5627,-508.617	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:277:277,0:277:9858:0:0:0,-83.3853,-887.165	0/0:165:165,0:165:5868:0:0:0,-49.6699,-528.229	0/1:106:56,50:56:2000:50:1766:-127.311,0,-148.365	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:102:47,55:47:1671:55:1957:-145.699,0,-119.967	0/0:68:68,0:68:2415:0:0:0,-20.47,-217.604	0/1:194:138,56:138:4939:56:2003:-122.143,0,-386.26	0/1:98:51,47:51:1804:47:1684:-122.346,0,-133.138	0/0:87:87,0:87:3102:0:0:0,-26.1896,-279.407	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.135	0/0:131:131,0:131:4684:0:0:0,-39.4349,-421.721	0/0:166:166,0:166:5929:0:0:0,-49.971,-533.718	0/0:113:113,0:113:4034:0:0:0,-34.0164,-363.248	0/0:151:151,0:151:5395:0:0:0,-45.4555,-485.682	0/0:104:104,0:104:3697:0:0:0,-31.3071,-332.933	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:131:75,55:75:2667:55:1959:-137.122,0,-200.822	0/0:32:32,0:32:1127:0:0:0,-9.63296,-101.737	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:95:45,50:45:1616:50:1796:-133.324,0,-117.126	0/0:84:80,4:80:2834:4:144:0,-11.9729,-241.985	0/1:6:2,4:2:68:4:140:-11.1384,0,-4.65153	0/1:48:27,21:27:963:21:743:-52.7439,0,-72.5365	0/0:100:92,6:92:3300:6:212:0,-10.439,-277.797	0/0:168:165,3:165:5892:3:108:0,-40.4979,-520.312	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:159:158,0:158:5626:0:0:0,-47.5627,-506.103	0/1:180:99,81:99:3548:81:2891:-206.239,0,-265.341	0/0:81:81,0:81:2875:0:0:0,-24.3834,-258.988	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.393	0/0:169:169,0:169:5992:0:0:0,-50.8741,-539.389	0/1:118:27,91:27:956:91:3215:-254.051,0,-50.8342	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.573	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:89:89,0:89:3172:0:0:0,-26.7917,-285.706	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:48:15,33:15:540:33:1167:-90.8849,0,-34.4871	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:307:307,0:307:10940:0:0:0,-92.4162,-984.479	0/0:143:139,4:139:4955:4:144:0,-29.7337,-432.787	0/1:182:152,30:152:5395:30:1071:-41.9148,0,-430.896	0/0:98:98,0:98:3485:0:0:0,-29.5009,-313.671	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:79:48,31:48:1712:31:1099:-75.4381,0,-130.584	0/0:112:112,0:112:3996:0:0:0,-33.7154,-359.823	0/0:282:282,0:282:10045:0:0:0,-84.8905,-903.918	0/0:143:143,0:143:5088:0:0:0,-43.0473,-458.06	0/0:82:82,0:82:2917:0:0:0,-24.6845,-262.764	0/1:92:45,47:45:1599:47:1684:-124.152,0,-116.505	0/0:170:170,0:170:6054:0:0:0,-51.1751,-544.966	0/1:56:29,27:29:1000:27:968:-70.5764,0,-73.4493	0/0:97:97,0:97:3429:0:0:0,-29.1999,-308.822	0/0:106:105,1:105:3704:1:36:0,-28.3146,-329.967	0/1:56:31,25:31:1093:25:896:-64.1027,0,-81.82	0/1:108:49,59:49:1747:59:2088:-155.67,0,-124.994	0/1:71:20,51:20:711:51:1802:-141.086,0,-42.9425	0/0:126:126,0:126:4488:0:0:0,-37.9298,-404.084	0/0:162:162,0:162:5794:0:0:0,-48.7669,-521.573
chr03	25238389	.	T	C	176642	PASS	AB=0.534323;ABP=34.0158;AC=155;AF=0.824468;AN=188;AO=8089;CIGAR=1X;DP=9526;DPB=9526;DPRA=0;EPP=17568.1;EPPR=3112.56;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9564;MQMR=59.9253;NS=94;NUMALT=1;ODDS=7.02749;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288652;QR=50460;RO=1432;RPL=8089;RPP=17568.1;RPPR=3112.56;RPR=0;RUN=1;SAF=0;SAP=17568.1;SAR=8089;SRF=0;SRP=3112.56;SRR=1432;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:5,7:5:165:7:237:-18.0467,0,-11.5612	1/1:148:0,148:0:0:148:5282:-475.513,-44.5524,0	0/1:138:68,70:68:2410:70:2491:-182.895,0,-175.611	1/1:140:0,140:0:0:140:4970:-447.448,-42.1442,0	1/1:79:1,78:1:36:78:2804:-249.001,-20.1831,0	1/1:33:0,33:0:0:33:1180:-106.5,-9.93399,0	0/1:142:67,75:67:2377:75:2696:-200.138,0,-171.44	1/1:146:0,146:0:0:146:5211:-469.128,-43.9504,0	1/1:38:0,38:0:0:38:1334:-120.356,-11.4391,0	0/1:81:41,40:41:1430:40:1432:-104.794,0,-104.608	1/1:88:0,88:0:0:88:3112:-280.306,-26.4906,0	1/1:87:1,86:1:36:86:3092:-274.909,-22.5913,0	1/1:86:0,86:0:0:86:3064:-275.61,-25.8886,0	1/1:101:0,101:0:0:101:3581:-322.495,-30.404,0	1/1:86:0,86:0:0:86:3062:-275.806,-25.8886,0	0/1:69:31,38:31:1085:38:1345:-100.577,0,-77.1859	0/1:131:42,89:42:1508:89:3181:-247.078,0,-96.5797	1/1:86:1,85:1:36:85:3043:-270.501,-22.2903,0	0/1:72:36,36:36:1249:36:1296:-95.2698,0,-91.0307	1/1:191:2,189:2:57:189:6741:-601.221,-52.0834,0	1/1:137:0,137:0:0:137:4900:-441.151,-41.2411,0	0/1:107:79,27:79:2817:27:964:-54.8747,0,-221.566	1/1:90:0,90:0:0:90:3179:-286.332,-27.0927,0	0/1:76:27,49:27:919:49:1752:-135.03,0,-60.1364	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:296:136,160:136:4785:160:5722:-425.993,0,-341.701	1/1:139:0,138:0:0:138:4936:-444.026,-41.5421,0	0/1:73:35,38:35:1260:38:1355:-100.275,0,-91.7303	1/1:206:0,204:0:0:204:7275:-654.44,-61.4101,0	1/1:82:3,79:3:108:79:2813:-243.333,-14.6093,0	1/1:157:0,157:0:0:157:5591:-503.308,-47.2617,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:271:0,271:0:0:271:9701:-873.037,-81.5791,0	1/1:164:0,164:0:0:164:5879:-529.218,-49.3689,0	0/1:103:45,58:45:1597:58:2080:-156.464,0,-113.009	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:100:52,48:52:1815:48:1728:-125.69,0,-133.522	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	0/1:198:60,138:60:2129:138:4941:-385.234,0,-132.273	0/1:98:46,52:46:1652:52:1860:-138.179,0,-119.468	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	1/1:70:0,70:0:0:70:2508:-225.915,-21.0721,0	1/1:135:2,133:2:72:133:4708:-417.041,-33.8023,0	1/1:168:0,168:0:0:168:6028:-542.62,-50.573,0	1/1:113:0,113:0:0:113:4032:-363.067,-34.0164,0	1/1:152:0,152:0:0:152:5443:-489.998,-45.7566,0	1/1:104:0,104:0:0:104:3702:-333.38,-31.3071,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:135:57,78:57:2017:78:2796:-211.241,0,-141.154	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/1:96:51,45:51:1786:45:1597:-115.113,0,-132.12	1/1:83:4,79:4:144:79:2807:-239.556,-11.6719,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:47:20,27:20:697:27:968:-73.289,0,-48.9023	1/1:99:0,99:0:0:99:3514:-316.464,-29.802,0	1/1:163:3,160:3:108:160:5716:-504.479,-38.9927,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:161:0,161:0:0:161:5745:-517.165,-48.4658,0	0/1:186:85,101:85:2950:101:3612:-269.292,0,-209.737	1/1:81:0,81:0:0:81:2893:-260.605,-24.3834,0	1/1:56:0,56:0:0:56:1989:-179.282,-16.8577,0	1/1:168:0,168:0:0:168:5972:-537.585,-50.573,0	0/1:120:93,27:93:3256:27:949:-49.5992,0,-257.133	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:49:0,49:0:0:49:1746:-157.422,-14.7505,0	1/1:93:0,93:0:0:93:3306:-297.757,-27.9958,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:48:33,15:33:1146:15:513:-32.0434,0,-88.9851	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:313:0,313:0:0:313:11128:-1001.36,-94.2224,0	1/1:144:4,140:4:144:140:4994:-436.291,-30.0347,0	0/1:187:31,156:31:1067:156:5566:-444.769,0,-40.0384	1/1:99:0,99:0:0:99:3535:-318.335,-29.802,0	0/1:10:9,1:9:294:1:36:-0.587975,0,-23.7653	0/1:76:30,46:30:1068:46:1639:-124.92,0,-73.5538	1/1:112:0,112:0:0:112:3970:-357.491,-33.7154,0	1/1:284:0,284:0:0:284:10089:-907.914,-85.4925,0	1/1:145:1,144:1:36:144:5153:-460.309,-40.0511,0	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	0/1:92:47,45:47:1680:45:1616:-118.035,0,-123.792	1/1:171:1,170:1:36:170:6076:-543.343,-47.8779,0	0/1:57:27,30:27:953:30:1080:-80.3545,0,-68.9243	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	1/1:106:0,106:0:0:106:3793:-341.563,-31.9092,0	0/1:56:25,31:25:866:31:1112:-83.5337,0,-61.3937	0/1:107:59,48:59:2093:48:1704:-121.434,0,-156.405	0/1:70:50,19:50:1788:19:680:-40.3984,0,-140.072	1/1:126:0,126:0:0:126:4481:-403.453,-37.9298,0	1/1:165:0,165:0:0:165:5866:-528.026,-49.67,0
chr03	25277847	.	AA	CA	309755	PASS	AB=0.485078;ABP=11.1757;AC=154;AF=0.819149;AN=188;AO=11131;CIGAR=1X1M;DP=13353;DPB=13353.5;DPRA=0;EPP=36.2855;EPPR=1235.15;GTI=1;LEN=1;MEANALT=1.24468;MQM=59.9731;MQMR=59.9712;NS=94;NUMALT=1;ODDS=2.26188;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=0;PRO=0;QA=397013;QR=74689;RO=2191;RPL=5359;RPP=36.2855;RPPR=1235.15;RPR=5772;RUN=1;SAF=11131;SAP=24173.7;SAR=0;SRF=2191;SRP=4760.71;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:14,15:14:482:15:528:-39.1215,0,-34.9757	1/1:193:0,193:0:0:193:6906:-621.606,-58.0988,0	0/1:137:90,47:90:3081:47:1653:-107.814,0,-236.275	1/1:256:0,256:0:0:256:9126:-821.232,-77.0637,0	1/1:133:2,130:2:59:130:4617:-410.087,-34.4376,0	1/1:141:0,141:0:0:141:5035:-453.292,-42.4452,0	0/1:149:87,62:87:2993:62:2206:-153.95,0,-224.746	1/1:245:0,245:0:0:245:8740:-786.474,-73.7524,0	1/1:103:0,103:0:0:103:3648:-328.524,-31.0061,0	0/1:122:71,51:71:2388:51:1828:-128.075,0,-178.4	1/1:72:0,72:0:0:72:2579:-232.359,-21.6742,0	1/1:83:0,83:0:0:83:2962:-266.812,-24.9855,0	1/1:96:0,96:0:0:96:3428:-308.732,-28.8989,0	1/1:117:0,117:0:0:117:4167:-375.2,-35.2205,0	1/1:85:0,85:0:0:85:3033:-273.199,-25.5876,0	0/1:87:39,47:39:1370:47:1680:-125.239,0,-97.3477	0/1:104:49,55:49:1669:55:1944:-143.926,0,-119.182	1/1:90:1,89:1:36:89:3153:-280.395,-23.4944,0	0/1:71:42,29:42:1429:29:1022:-70.9177,0,-107.523	1/1:269:1,265:1:23:265:9432:-846.475,-78.0274,0	1/1:215:0,215:0:0:215:7676:-690.747,-64.7215,0	0/1:180:110,70:110:3759:70:2499:-170.977,0,-284.325	1/1:58:0,57:0:0:57:2039:-183.422,-17.1587,0	0/1:112:58,54:58:1971:54:1917:-138.863,0,-143.94	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	0/1:452:236,216:236:7996:216:7677:-554.904,0,-583.622	1/1:288:0,286:0:0:286:10185:-916.286,-86.0946,0	0/1:45:19,26:19:611:26:932:-70.6525,0,-41.7465	1/1:414:1,413:1:32:413:14742:-1323.32,-121.427,0	1/1:203:8,194:8:265:194:6908:-597.612,-36.9921,0	1/1:172:0,171:0:0:171:6103:-549.129,-51.4761,0	0/1:14:3,11:3:102:11:392:-31.4056,0,-5.30231	0/1:68:18,50:18:583:50:1778:-139.831,0,-32.3058	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:16:0,16:0:0:16:563:-50.9998,-4.81648,0	1/1:44:0,44:0:0:44:1558:-140.51,-13.2453,0	1/1:254:1,252:1:36:252:9003:-806.65,-72.9221,0	1/1:331:0,330:0:0:330:11781:-1059.79,-99.3399,0	0/1:92:50,42:50:1690:42:1508:-108.32,0,-124.682	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:213:98,115:98:3271:115:4077:-302.997,0,-230.488	1/1:64:0,63:0:0:63:2249:-202.307,-18.9649,0	0/1:174:93,81:93:3260:81:2887:-207.687,0,-241.241	0/1:82:40,42:40:1344:42:1498:-110.429,0,-96.5625	1/1:79:0,78:0:0:78:2790:-250.423,-23.4803,0	1/1:98:0,98:0:0:98:3491:-314.402,-29.5009,0	1/1:229:0,229:0:0:229:8175:-735.762,-68.9359,0	1/1:319:1,318:1:23:318:11357:-1019.52,-93.7287,0	1/1:184:0,184:0:0:184:6564:-590.842,-55.3895,0	1/1:257:0,256:0:0:256:9136:-821.966,-77.0637,0	1/1:192:0,192:0:0:192:6858:-617.29,-57.7978,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:218:99,119:99:3372:119:4240:-316.155,0,-238.071	1/1:124:1,123:1:25:123:4412:-394.751,-34.8279,0	0/1:55:30,20:30:1008:20:720:-49.7334,0,-75.63	0/1:229:118,111:118:4090:111:3966:-288.194,0,-299.351	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.0314	0/1:28:18,10:18:634:10:360:-24.3155,0,-48.9583	1/1:101:0,101:0:0:101:3611:-325.196,-30.404,0	1/1:155:0,155:0:0:155:5527:-497.554,-46.6597,0	0/1:17:5,12:5:178:12:428:-33.7413,0,-11.2511	1/1:351:0,351:0:0:351:12528:-1127.08,-105.662,0	0/1:216:73,143:73:2533:143:5120:-395.92,0,-162.97	1/1:146:0,146:0:0:146:5224:-470.297,-43.9504,0	1/1:162:0,160:0:0:160:5711:-513.746,-48.1648,0	1/1:183:5,178:5:163:178:6363:-557.757,-40.1465,0	0/1:251:164,87:164:5594:87:3094:-203.129,0,-428.034	1/1:41:0,41:0:0:41:1437:-129.623,-12.3422,0	1/1:89:0,89:0:0:89:3188:-287.144,-26.7917,0	1/1:131:0,131:0:0:131:4685:-421.809,-39.4349,0	1/1:27:0,27:0:0:27:950:-85.8125,-8.12781,0	0/1:146:68,78:68:2307:78:2775:-206.041,0,-163.935	1/1:85:0,85:0:0:85:3020:-272.03,-25.5876,0	1/1:188:1,187:1:36:187:6655:-595.433,-52.9954,0	1/1:297:2,295:2:59:295:10533:-942.283,-83.8021,0	0/1:222:94,128:94:3153:128:4522:-340.292,0,-217.166	1/1:177:1,176:1:36:176:6286:-562.236,-49.684,0	0/1:31:21,10:21:707:10:360:-23.4124,0,-54.6089	0/1:217:113,104:113:3953:104:3706:-268.419,0,-290.639	1/1:142:0,141:0:0:141:5019:-451.499,-42.4452,0	1/1:343:0,343:0:0:343:12273:-1104.41,-103.253,0	1/1:129:0,129:0:0:129:4599:-414.076,-38.8329,0	1/1:79:1,78:1:34:78:2783:-247.312,-20.3825,0	0/1:93:40,52:40:1326:52:1856:-139.265,0,-91.5718	1/1:179:0,177:0:0:177:6345:-570.832,-53.2823,0	0/1:42:23,18:23:802:18:640:-45.2275,0,-59.7952	1/1:98:0,98:0:0:98:3491:-314.369,-29.5009,0	1/1:92:0,92:0:0:92:3283:-295.69,-27.6948,0	0/1:85:44,41:44:1509:41:1455:-105.658,0,-110.51	0/1:152:77,75:77:2649:75:2688:-196.408,0,-192.896	0/1:76:57,18:57:1908:18:641:-35.0824,0,-149.052	1/1:173:0,170:0:0:170:6054:-544.64,-51.1751,0	1/1:127:0,127:0:0:127:4499:-405.077,-38.2308,0
chr03	25277880	.	A	G	28200.8	PASS	AB=0.498538;ABP=3.07379;AC=31;AF=0.164894;AN=188;AO=1726;CIGAR=1X;DP=12364;DPB=12364;DPRA=0.886169;EPP=3716.31;EPPR=23055.4;GTI=2;LEN=1;MEANALT=1;MQM=59.9635;MQMR=59.9747;NS=94;NUMALT=1;ODDS=4.39543;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60998;QR=376816;RO=10636;RPL=1722;RPP=3716.31;RPPR=23046.7;RPR=4;RUN=1;SAF=1726;SAP=3750.97;SAR=0;SRF=10635;SRP=23090.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:16,13:16:572:13:464:-33.3676,0,-43.0836	0/0:173:173,0:173:6136:0:0:0,-52.0782,-552.347	0/1:124:45,79:45:1584:79:2820:-216.712,0,-105.523	0/0:247:247,0:247:8766:0:0:0,-74.3544,-788.85	0/0:130:130,0:130:4583:0:0:0,-39.1339,-412.635	0/0:139:139,0:139:4900:0:0:0,-41.8432,-441.153	0/1:144:63,81:63:2252:81:2854:-213.751,0,-159.595	0/0:239:239,0:239:8516:0:0:0,-71.9462,-766.305	0/0:103:102,1:102:3628:1:36:0,-27.4078,-323.129	0/1:121:51,70:51:1805:70:2488:-187.705,0,-126.305	0/0:71:71,0:71:2510:0:0:0,-21.3731,-226.152	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.186	0/0:111:111,0:111:3951:0:0:0,-33.4143,-355.654	0/0:82:82,0:82:2890:0:0:0,-24.6845,-260.338	0/1:82:45,37:45:1595:37:1312:-93.6972,0,-119.155	0/1:97:51,46:51:1804:46:1636:-118.329,0,-133.442	0/0:83:83,0:83:2952:0:0:0,-24.9855,-265.915	0/1:71:30,41:30:1060:41:1460:-110.323,0,-74.3381	0/0:263:263,0:263:9314:0:0:0,-79.1709,-838.237	0/0:208:208,0:208:7351:0:0:0,-62.6142,-661.592	0/1:77:69,8:69:2440:8:284:-2.72404,0,-196.675	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.717	0/1:103:50,53:50:1771:53:1877:-138.201,0,-128.666	0/0:91:91,0:91:3216:0:0:0,-27.3937,-289.663	0/0:216:209,7:209:7343:7:252:0,-41.9935,-637.903	0/0:284:284,0:284:10052:0:0:0,-85.4925,-904.627	0/1:42:26,16:26:932:16:555:-37.6328,0,-71.5556	0/0:389:389,0:389:13799:0:0:0,-117.101,-1241.7	0/0:187:181,6:181:6362:6:203:0,-37.6914,-554.078	0/0:165:165,0:165:5844:0:0:0,-49.6699,-525.705	0/1:14:11,3:11:383:3:108:-5.86075,0,-30.5888	0/1:61:47,14:47:1663:14:478:-24.9813,0,-131.594	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:15:15,0:15:524:0:0:0,-4.51545,-47.4896	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.097	0/0:249:249,0:249:8836:0:0:0,-74.9565,-795.235	0/0:312:312,0:312:11047:0:0:0,-93.9214,-994.136	0/1:84:36,48:36:1292:48:1712:-129.079,0,-91.2972	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:199:104,95:104:3690:95:3360:-242.711,0,-272.399	0/0:62:62,0:62:2202:0:0:0,-18.6639,-198.44	0/1:165:78,87:78:2743:87:3074:-227.22,0,-197.442	0/1:79:41,38:41:1464:38:1347:-97.7481,0,-108.275	0/0:74:74,0:74:2617:0:0:0,-22.2762,-235.777	0/0:93:93,0:93:3260:0:0:0,-27.9958,-293.624	0/0:213:213,0:213:7560:0:0:0,-64.1194,-680.446	0/0:303:303,0:303:10746:0:0:0,-91.2121,-966.281	0/0:179:179,0:179:6340:0:0:0,-53.8844,-570.697	0/0:246:246,0:246:8715:0:0:0,-74.0534,-784.348	0/0:184:182,0:182:6503:0:0:0,-54.7875,-584.995	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/1:200:104,96:104:3700:96:3432:-248.888,0,-272.998	0/0:117:117,0:117:4139:0:0:0,-35.2205,-372.695	0/1:49:22,27:22:788:27:956:-71.6053,0,-56.4943	0/1:216:109,107:109:3846:107:3730:-270.884,0,-281.318	0/0:45:45,0:45:1590:0:0:0,-13.5463,-143.389	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:98:98,0:98:3445:0:0:0,-29.5009,-310.266	0/0:147:147,0:147:5236:0:0:0,-44.2514,-471.378	0/1:17:12,5:12:432:5:171:-10.6079,0,-34.1037	0/0:340:340,0:340:12069:0:0:0,-102.35,-1085.59	0/1:213:140,73:140:4956:73:2547:-165.338,0,-382.074	0/0:135:135,0:135:4763:0:0:0,-40.639,-428.832	0/0:160:160,0:160:5661:0:0:0,-48.1648,-509.613	0/0:172:167,5:167:5889:5:180:0,-35.2251,-513.572	0/1:239:81,158:81:2871:158:5563:-428.848,0,-186.682	0/0:37:37,0:37:1286:0:0:0,-11.1381,-116.039	0/0:83:83,0:83:2960:0:0:0,-24.9855,-266.634	0/0:126:126,0:126:4454:0:0:0,-37.9298,-401.035	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:131:69,62:69:2468:62:2196:-158.471,0,-182.939	0/0:74:74,0:74:2632:0:0:0,-22.2762,-237.128	0/0:180:180,0:180:6376:0:0:0,-54.1854,-573.936	0/0:288:287,1:287:10137:1:32:0,-83.4973,-909.078	0/1:208:118,90:118:4196:90:3184:-224.173,0,-315.02	0/0:161:161,0:161:5728:0:0:0,-48.4658,-515.642	0/1:29:7,22:7:248:22:784:-62.154,0,-13.9343	0/1:204:97,107:97:3402:107:3777:-278.722,0,-244.987	0/0:129:128,1:128:4548:1:36:0,-35.2346,-405.892	0/0:337:337,0:337:11937:0:0:0,-101.447,-1074.2	0/0:130:130,0:130:4617:0:0:0,-39.1339,-415.696	0/0:74:74,0:74:2624:0:0:0,-22.2762,-236.406	0/1:88:49,39:49:1718:39:1354:-95.6651,0,-128.413	0/0:170:170,0:170:6006:0:0:0,-51.1751,-540.651	0/1:39:17,22:17:608:22:780:-58.7829,0,-43.3119	0/0:94:94,0:94:3356:0:0:0,-28.2968,-302.068	0/0:87:87,0:87:3096:0:0:0,-26.1896,-278.869	0/1:82:40,42:40:1394:42:1468:-107.727,0,-101.068	0/1:142:70,72:70:2492:72:2564:-188.264,0,-181.787	0/1:71:17,54:17:600:54:1924:-152.064,0,-32.9561	0/0:155:155,0:155:5501:0:0:0,-46.6596,-495.22	0/0:127:127,0:127:4450:0:0:0,-38.2308,-400.677
chr03	25293031	.	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chr03	25304042	.	A	G	155715	PASS	AB=0.479159;ABP=12.6952;AC=155;AF=0.824468;AN=188;AO=7471;CIGAR=1X;DP=8836;DPB=8836;DPRA=0;EPP=16226.1;EPPR=2951.87;GTI=2;LEN=1;MEANALT=1.07447;MQM=42.5955;MQMR=59.908;NS=94;NUMALT=1;ODDS=0.341346;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264736;QR=48721;RO=1358;RPL=7471;RPP=16226.1;RPPR=2951.87;RPR=0;RUN=1;SAF=7471;SAP=16226.1;SAR=0;SRF=1358;SRP=2951.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:27,18:27:968:18:640:-42.9277,0,-73.891	1/1:41:0,41:0:0:41:1457:-127.336,-12.3422,0	0/1:113:61,52:61:2180:52:1859:-128.783,0,-162.45	1/1:225:1,223:1:36:223:7897:-690.261,-64.1884,0	1/1:21:0,21:0:0:21:748:-63.9569,-6.32163,0	1/1:8:0,8:0:0:8:288:-25.5697,-2.40824,0	0/1:60:37,23:37:1328:23:802:-52.7572,0,-101.76	1/1:136:0,136:0:0:136:4836:-424.099,-40.9401,0	1/1:85:0,85:0:0:85:2990:-261.409,-25.5876,0	0/1:62:37,25:37:1332:25:896:-60.7258,0,-101.519	1/1:119:1,117:1:36:117:4084:-355.047,-32.2792,0	1/1:113:0,113:0:0:113:3941:-346.074,-34.0164,0	1/1:95:0,94:0:0:94:3307:-289.162,-28.2968,0	1/1:115:0,115:0:0:115:3996:-348.353,-34.6185,0	1/1:100:0,100:0:0:100:3552:-311.712,-30.103,0	0/1:109:53,56:53:1900:56:1975:-139.545,0,-138.466	0/1:62:31,31:31:1112:31:1094:-77.3419,0,-81.7275	1/1:42:0,42:0:0:42:1495:-131.37,-12.6433,0	0/1:30:14,16:14:504:16:556:-40.4093,0,-36.6672	1/1:123:0,123:0:0:123:4379:-383.559,-37.0267,0	1/1:87:0,87:0:0:87:3095:-270.293,-26.1896,0	0/1:128:82,46:82:2936:46:1656:-107.102,0,-225.936	1/1:94:0,94:0:0:94:3354:-292.775,-28.2968,0	0/1:31:14,17:14:504:17:604:-42.7423,0,-36.3662	1/1:79:0,79:0:0:79:2802:-243.684,-23.7814,0	0/1:262:136,125:136:4877:125:4450:-311.16,0,-360.089	1/1:164:0,164:0:0:164:5863:-510.161,-49.3689,0	0/1:37:19,18:19:680:18:639:-44.8949,0,-50.3911	1/1:371:10,361:10:360:361:12825:-1096.34,-78.9425,0	1/1:104:4,100:4:144:100:3565:-297.78,-17.9935,0	1/1:37:0,37:0:0:37:1319:-115.725,-11.1381,0	0/1:3:1,2:1:36:2:72:-5.71023,0,-2.69518	0/1:4:2,2:2:72:2:72:-5.4092,0,-5.6326	1/1:7:0,7:0:0:7:252:-22.4173,-2.10721,0	1/1:3:0,3:0:0:3:108:-9.80756,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.1124,-1.50515,0	1/1:240:0,239:0:0:239:8376:-735.447,-71.9462,0	1/1:137:0,137:0:0:137:4886:-425.561,-41.2411,0	0/1:72:35,37:35:1260:37:1276:-90.9977,0,-92.0176	1/1:1:0,1:0:0:1:36:-3.4807,-0.30103,0	0/1:121:64,57:64:2304:57:2012:-139.188,0,-171.196	1/1:44:0,44:0:0:44:1533:-134.465,-13.2453,0	0/1:161:84,77:84:3016:77:2707:-185.784,0,-223.204	0/1:89:35,54:35:1260:54:1883:-138.289,0,-86.9138	1/1:68:0,68:0:0:68:2373:-209.254,-20.47,0	1/1:104:0,104:0:0:104:3708:-325.492,-31.3071,0	1/1:143:2,141:2:72:141:4988:-429.778,-36.2106,0	1/1:196:0,196:0:0:196:7012:-617.281,-59.0019,0	1/1:89:0,89:0:0:89:3165:-278.575,-26.7917,0	1/1:103:0,103:0:0:103:3671:-323.362,-31.0061,0	1/1:43:0,43:0:0:43:1532:-133.428,-12.9443,0	1/1:5:0,5:0:0:5:180:-16.1966,-1.50515,0	0/1:98:43,55:43:1532:55:1960:-141.097,0,-108.672	1/1:106:0,106:0:0:106:3802:-333.145,-31.9092,0	1/1:2:0,2:0:0:2:72:-6.65513,-0.60206,0	0/1:84:27,57:27:968:57:2032:-152.448,0,-62.1508	1/1:46:0,46:0:0:46:1640:-144.235,-13.8474,0	0/1:12:5,7:5:180:7:248:-18.5983,0,-12.9397	0/1:16:6,10:6:216:10:360:-27.2247,0,-14.974	1/1:55:0,55:0:0:55:1955:-170.754,-16.5567,0	1/1:130:0,130:0:0:130:4579:-402.514,-39.1339,0	0/1:2:1,1:1:36:1:32:-2.56476,0,-2.99621	1/1:231:0,231:0:0:231:8192:-717.963,-69.5379,0	0/1:100:43,57:43:1540:57:2035:-149.207,0,-108.79	1/1:66:1,65:1:36:65:2304:-197.66,-16.2697,0	1/1:92:0,92:0:0:92:3275:-287.93,-27.6948,0	1/1:179:2,177:2:72:177:6330:-548.215,-47.0476,0	0/1:116:76,40:76:2736:40:1420:-90.755,0,-211.562	1/1:75:0,75:0:0:75:2652:-231.696,-22.5773,0	1/1:27:0,27:0:0:27:959:-84.5037,-8.12781,0	1/1:51:0,51:0:0:51:1784:-157.741,-15.3525,0	1/1:18:0,18:0:0:18:644:-57.0717,-5.41854,0	0/1:90:55,35:55:1980:35:1241:-81.3602,0,-151.382	1/1:83:0,83:0:0:83:2969:-259.585,-24.9855,0	1/1:185:0,185:0:0:185:6593:-571.908,-55.6906,0	1/1:215:1,214:1:36:214:7640:-667.812,-61.1249,0	0/1:163:105,58:105:3761:58:2067:-131.822,0,-289.165	1/1:130:1,128:1:36:128:4553:-393.199,-35.5896,0	0/1:7:2,5:2:72:5:180:-14.0052,0,-4.72951	0/1:103:37,66:37:1332:66:2347:-173.407,0,-89.1763	1/1:166:0,166:0:0:166:5881:-514.066,-49.971,0	1/1:198:0,198:0:0:198:7092:-623.631,-59.6039,0	1/1:88:0,88:0:0:88:3138:-275.153,-26.4906,0	1/1:125:0,125:0:0:125:4411:-387.699,-37.6288,0	0/1:53:26,27:26:936:27:939:-66.1959,0,-68.6049	1/1:161:0,161:0:0:161:5630:-496.685,-48.4658,0	0/1:29:15,13:15:540:13:452:-31.3043,0,-40.1506	1/1:99:0,99:0:0:99:3424:-300.525,-29.802,0	1/1:88:0,88:0:0:88:3040:-264.34,-26.4906,0	0/1:90:42,48:42:1504:48:1712:-122.529,0,-108.292	0/1:134:67,67:67:2396:67:2352:-165.469,0,-175.558	0/1:81:53,28:53:1895:28:1000:-63.0106,0,-146.444	1/1:150:0,150:0:0:150:5315:-467.278,-45.1545,0	1/1:156:0,156:0:0:156:5499:-484.266,-46.9607,0
chr03	25309488	.	C	T	181740	PASS	AB=0.537344;ABP=38.0422;AC=154;AF=0.819149;AN=188;AO=8230;CIGAR=1X;DP=9603;DPB=9603;DPRA=0;EPP=17683.6;EPPR=2925.97;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9502;MQMR=59.9129;NS=94;NUMALT=1;ODDS=3.00279;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=294300;QR=48696;RO=1366;RPL=22;RPP=17683.6;RPPR=2925.97;RPR=8208;RUN=1;SAF=8230;SAP=17874.2;SAR=0;SRF=1366;SRP=2969.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:28,19:28:1000:19:680:-47.3808,0,-76.167	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:244:116,128:116:4148:128:4577:-338.642,0,-300.044	1/1:266:0,265:0:0:265:9499:-854.571,-79.773,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:6:0,6:0:0:6:216:-19.7822,-1.80618,0	0/1:90:49,40:49:1734:40:1424:-101.306,0,-129.192	1/1:133:0,133:0:0:133:4732:-426.039,-40.037,0	1/1:71:0,71:0:0:71:2533:-228.22,-21.3731,0	0/1:76:30,44:30:1071:44:1571:-119.105,0,-74.136	1/1:69:0,69:0:0:69:2470:-222.327,-20.7711,0	1/1:94:0,94:0:0:94:3376:-304.046,-28.2968,0	1/1:178:1,177:1:36:177:6360:-568.889,-49.9851,0	1/1:70:0,70:0:0:70:2503:-225.522,-21.0721,0	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	0/1:64:27,37:27:968:37:1320:-99.8355,0,-68.1714	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	1/1:28:0,28:0:0:28:1008:-91.036,-8.42884,0	0/1:30:15,15:15:528:15:536:-39.5439,0,-38.8172	1/1:231:0,231:0:0:231:8287:-745.836,-69.5379,0	1/1:100:0,100:0:0:100:3572:-321.685,-30.103,0	0/1:169:102,67:102:3622:67:2408:-166.102,0,-275.309	1/1:72:1,71:1:36:71:2527:-224.074,-18.0759,0	0/1:60:26,34:26:936:34:1212:-91.3245,0,-66.4977	1/1:64:0,64:0:0:64:2285:-205.91,-19.2659,0	0/1:205:95,110:95:3382:110:3906:-289.966,0,-242.885	1/1:247:3,244:3:108:244:8744:-776.872,-64.2792,0	0/1:28:7,21:7:252:21:745:-58.9439,0,-14.6001	1/1:268:3,265:3:108:265:9478:-842.472,-70.6009,0	1/1:101:3,98:3:104:98:3498:-305.321,-20.7012,0	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9514	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:163:2,161:2:72:161:5764:-512.037,-42.2312,0	1/1:158:1,156:1:36:156:5530:-494.248,-43.9483,0	0/1:40:23,17:23:811:17:603:-42.5583,0,-61.2688	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:65:27,38:27:951:38:1356:-102.774,0,-66.3374	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	0/1:149:62,87:62:2219:87:3105:-234.822,0,-155.12	0/1:36:22,13:22:792:13:468:-31.5638,0,-60.7098	1/1:101:0,101:0:0:101:3620:-325.919,-30.404,0	1/1:100:0,100:0:0:100:3565:-321.057,-30.103,0	1/1:150:1,149:1:36:149:5293:-472.914,-41.5653,0	1/1:287:2,285:2:72:285:10189:-910.116,-79.5734,0	1/1:118:1,117:1:36:117:4188:-373.503,-31.9233,0	1/1:298:0,298:0:0:298:10682:-961.198,-89.7069,0	1/1:150:0,150:0:0:150:5339:-480.642,-45.1545,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:158:76,82:76:2719:82:2944:-217.631,0,-197.382	1/1:85:0,85:0:0:85:3015:-270.724,-25.5876,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:270:115,155:115:4112:155:5523:-415.914,0,-288.987	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:74:0,74:0:0:74:2648:-238.566,-22.2762,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:272:0,272:0:0:272:9744:-876.907,-81.8802,0	0/1:147:61,86:61:2184:86:3088:-233.896,0,-152.575	1/1:62:0,62:0:0:62:2190:-197.364,-18.6639,0	1/1:183:2,181:2:72:181:6473:-575.831,-48.2662,0	1/1:166:6,160:6:216:160:5724:-495.485,-30.1805,0	0/1:131:76,55:76:2710:55:1953:-136.382,0,-204.702	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:50:0,50:0:0:50:1781:-160.572,-15.0515,0	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:100:57,43:57:2039:43:1544:-109.15,0,-153.678	1/1:168:1,167:1:36:167:5995:-536.054,-46.9748,0	1/1:121:0,121:0:0:121:4335:-390.324,-36.4246,0	1/1:191:0,191:0:0:191:6843:-615.938,-57.4967,0	0/1:160:43,117:43:1531:117:4190:-329.114,0,-89.9175	1/1:87:0,87:0:0:87:3099:-279.138,-26.1896,0	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:134:46,88:46:1630:88:3126:-241.221,0,-106.649	1/1:136:0,135:0:0:135:4840:-435.554,-40.6391,0	1/1:279:3,276:3:108:276:9850:-876.411,-73.9548,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:71:0,71:0:0:71:2533:-228.221,-21.3731,0	0/1:50:22,28:22:766:28:970:-72.5561,0,-54.207	1/1:110:0,110:0:0:110:3940:-354.787,-33.1133,0	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	1/1:60:1,59:1:36:59:2112:-186.752,-14.4726,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	0/1:70:40,30:40:1420:30:1076:-76.0808,0,-107.025	0/1:163:60,103:60:2132:103:3682:-282.514,0,-143.081	0/1:69:44,25:44:1559:25:896:-60.1893,0,-119.83	1/1:218:0,218:0:0:218:7800:-701.944,-65.6245,0	1/1:136:1,135:1:36:135:4848:-432.683,-37.3418,0
chr03	25336284	.	T	A	24506.2	PASS	AB=0.526976;ABP=18.1234;AC=35;AF=0.18617;AN=188;AO=1276;CIGAR=1X;DP=7140;DPB=7140;DPRA=1.02675;EPP=1987.97;EPPR=9419;GTI=0;LEN=1;MEANALT=1.06977;MQM=59.9679;MQMR=59.9949;NS=94;NUMALT=1;ODDS=1.37416;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45688;QR=209931;RO=5858;RPL=1178;RPP=1987.97;RPPR=9419;RPR=98;RUN=1;SAF=1276;SAP=2773.81;SAR=0;SRF=5858;SRP=12723.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:23,15:23:824:15:521:-35.4182,0,-62.6844	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/1:133:55,78:55:1976:78:2796:-211.843,0,-138.078	0/0:140:140,0:140:5010:0:0:0,-42.1442,-451.046	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/1:45:16,29:16:576:29:1036:-80.0076,0,-38.6286	0/0:102:102,0:102:3659:0:0:0,-30.7051,-329.512	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/1:68:29,39:29:1036:39:1396:-105.468,0,-73.0839	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:85:85,0:85:3019:0:0:0,-25.5875,-271.939	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.723	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.107	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:60:27,33:27:955:33:1188:-89.1668,0,-68.2031	0/1:29:17,12:17:612:12:428:-30.1289,0,-46.6836	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:137:136,0:136:4883:0:0:0,-40.9401,-439.26	0/0:135:134,1:134:4820:1:36:0,-37.0408,-430.354	0/1:139:33,104:33:1184:104:3732:-294.479,0,-65.2674	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.898	0/1:51:34,17:34:1209:17:612:-40.0609,0,-93.7616	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/1:231:138,93:138:4943:93:3340:-231.279,0,-375.481	0/0:215:215,0:215:7707:0:0:0,-64.7214,-693.661	0/1:25:17,8:17:612:8:288:-18.7417,0,-47.8877	0/0:224:223,1:223:8006:1:36:0,-63.8324,-716.958	0/0:166:159,7:159:5708:7:252:0,-26.942,-490.807	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:148:148,0:148:5316:0:0:0,-44.5524,-478.572	0/0:114:114,0:114:4079:0:0:0,-34.3174,-367.296	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:143:82,61:82:2952:61:2180:-153.419,0,-222.865	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:112:46,66:46:1652:66:2363:-179.213,0,-115.253	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:99:99,0:99:3520:0:0:0,-29.802,-317.009	0/0:114:114,0:114:4064:0:0:0,-34.3174,-365.949	0/0:88:87,1:87:3124:1:21:0,-24.3907,-279.286	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:124:124,0:124:4456:0:0:0,-37.3277,-401.209	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:134:54,80:54:1920:80:2880:-219.098,0,-132.736	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:104:60,44:60:2160:44:1580:-110.994,0,-163.36	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/1:19:7,12:7:248:12:417:-32.1406,0,-16.9446	0/0:60:57,3:57:2040:3:108:0,-7.98663,-173.797	0/0:95:94,1:94:3358:1:36:0,-24.9996,-298.837	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.134	0/1:199:101,98:101:3624:98:3509:-256.091,0,-266.46	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/0:127:127,0:127:4551:0:0:0,-38.2308,-409.755	0/1:166:58,108:58:2075:108:3872:-298.703,0,-137.049	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.894	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:81:30,51:30:1067:51:1836:-141.137,0,-71.9578	0/1:83:38,45:38:1368:45:1615:-120.654,0,-98.4353	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.824	0/0:125:125,0:125:4492:0:0:0,-37.6287,-404.447	0/1:88:54,34:54:1940:34:1224:-83.9764,0,-148.196	0/0:73:72,1:72:2584:1:36:0,-18.3769,-229.211	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:98:49,48:49:1764:48:1728:-126.246,0,-129.484	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:123:123,0:123:4402:0:0:0,-37.0267,-396.351	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:35:27,8:27:957:8:288:-15.7314,0,-75.9078	0/0:101:101,0:101:3615:0:0:0,-30.404,-325.555	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:34:20,14:20:716:14:489:-34.1039,0,-54.5327	0/1:83:33,50:33:1184:50:1788:-136.217,0,-81.8828	0/1:54:19,35:19:680:35:1217:-93.5729,0,-45.2735	0/0:189:188,0:188:6735:0:0:0,-56.5936,-605.863	0/0:81:80,1:80:2876:1:36:0,-20.7852,-255.478
chr03	25370922	.	C	T	161235	PASS	AB=0.517725;ABP=10.0153;AC=150;AF=0.806452;AN=186;AO=7351;CIGAR=1X;DP=8605;DPB=8605;DPRA=63.0183;EPP=15965.5;EPPR=2721.69;GTI=3;LEN=1;MEANALT=1.02198;MQM=59.9906;MQMR=59.9952;NS=93;NUMALT=1;ODDS=0.528865;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262371;QR=44440;RO=1252;RPL=0;RPP=15965.5;RPPR=2721.69;RPR=7351;RUN=1;SAF=0;SAP=15965.5;SAR=7351;SRF=0;SRP=2721.69;SRR=1252;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:7,17:7:252:17:593:-46.47,0,-15.8042	1/1:152:0,152:0:0:152:5410:-487.031,-45.7566,0	0/1:109:52,57:52:1856:57:2029:-150.068,0,-134.507	1/1:196:0,196:0:0:196:6989:-629.075,-59.0019,0	1/1:62:1,61:1:36:61:2184:-193.228,-15.0656,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:124:50,74:50:1767:74:2648:-201.239,0,-121.985	1/1:106:1,105:1:36:105:3760:-335.001,-28.3109,0	1/1:54:0,54:0:0:54:1930:-173.975,-16.2556,0	0/1:84:43,41:43:1526:41:1472:-107.487,0,-112.345	1/1:79:0,78:0:0:78:2774:-249.541,-23.4803,0	1/1:88:0,88:0:0:88:3124:-281.385,-26.4906,0	1/1:63:0,63:0:0:63:2226:-200.603,-18.9649,0	1/1:96:0,96:0:0:96:3429:-308.793,-28.8989,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:57:25,32:25:883:32:1152:-86.8314,0,-62.6287	0/1:63:24,39:24:860:39:1383:-105.803,0,-58.7569	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	0/1:53:24,28:24:848:28:991:-73.4903,0,-60.6265	1/1:255:2,253:2:72:253:9027:-805.575,-69.9259,0	1/1:140:0,140:0:0:140:5001:-450.226,-42.1442,0	0/1:131:85,46:85:3010:46:1648:-109.174,0,-231.697	1/1:21:0,21:0:0:21:745:-67.3734,-6.32163,0	0/1:88:33,55:33:1148:55:1963:-150.454,0,-77.1322	1/1:88:0,88:0:0:88:3135:-282.376,-26.4906,0	0/1:255:116,139:116:4151:139:4984:-371.945,0,-297.01	1/1:184:0,184:0:0:184:6545:-589.135,-55.3895,0	0/1:33:19,14:19:684:14:500:-35.4022,0,-51.9563	1/1:351:0,351:0:0:351:12499:-1124.75,-105.662,0	1/1:73:1,72:1:36:72:2572:-228.131,-18.3769,0	1/1:83:0,83:0:0:83:2976:-268.07,-24.9855,0	.:.:.:.:.:.:.:.	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:184:2,182:2:72:182:6454:-574.115,-48.5528,0	1/1:176:0,176:0:0:176:6271:-564.485,-52.9813,0	0/1:64:36,28:36:1241:28:1008:-71.7704,0,-92.7209	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:89:39,50:39:1396:50:1775:-133.239,0,-99.1474	1/1:46:0,46:0:0:46:1634:-147.347,-13.8474,0	0/1:96:50,46:50:1777:46:1640:-118.99,0,-131.312	0/1:72:35,37:35:1233:37:1328:-98.1481,0,-89.5977	1/1:77:0,77:0:0:77:2735:-246.392,-23.1793,0	1/1:101:0,101:0:0:101:3597:-323.937,-30.404,0	1/1:114:0,114:0:0:114:4066:-366.128,-34.3174,0	1/1:149:0,149:0:0:149:5339:-480.642,-44.8535,0	1/1:130:0,130:0:0:130:4645:-418.212,-39.1339,0	1/1:163:0,163:0:0:163:5850:-526.61,-49.0679,0	1/1:191:1,190:1:36:190:6780:-606.676,-53.8985,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:159:67,92:67:2393:92:3293:-248.724,0,-167.762	1/1:26:0,26:0:0:26:921:-83.2052,-7.82678,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:138:72,66:72:2568:66:2369:-171.926,0,-189.824	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:108:0,108:0:0:108:3846:-346.336,-32.5112,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:168:0,168:0:0:168:6011:-541.094,-50.573,0	0/1:183:82,101:82:2904:101:3588:-268.04,0,-206.507	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0	1/1:328:2,326:2:72:326:11617:-1038.57,-91.9011,0	0/1:44:28,16:28:1004:16:564:-37.845,0,-77.4305	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:69:0,69:0:0:69:2454:-221.114,-20.7711,0	1/1:109:1,108:1:36:108:3847:-342.827,-29.214,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:85:32,53:32:1144:53:1877:-143.619,0,-77.682	0/1:46:26,20:26:910:20:716:-50.9203,0,-68.3667	1/1:148:0,148:0:0:148:5303:-477.404,-44.5524,0	1/1:187:1,186:1:36:186:6657:-595.608,-52.6943,0	0/1:81:38,43:38:1355:43:1532:-113.789,0,-97.8663	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:91:47,44:47:1653:44:1580:-115.098,0,-121.662	1/1:107:0,107:0:0:107:3809:-343.009,-32.2102,0	1/1:225:0,225:0:0:225:8082:-727.394,-67.7318,0	1/1:89:0,89:0:0:89:3175:-285.973,-26.7917,0	1/1:62:0,62:0:0:62:2215:-199.614,-18.6639,0	0/1:71:33,38:33:1168:38:1340:-99.5241,0,-84.0541	1/1:147:0,147:0:0:147:5253:-472.907,-44.2514,0	0/1:33:21,12:21:740:12:432:-29.2872,0,-56.9894	1/1:79:0,79:0:0:79:2818:-253.86,-23.7814,0	1/1:83:0,83:0:0:83:2955:-266.184,-24.9855,0	0/1:59:27,32:27:964:32:1144:-85.5087,0,-69.3161	0/1:144:66,78:66:2333:78:2792:-208.172,0,-166.88	0/1:65:47,18:47:1664:18:640:-38.3624,0,-130.478	1/1:136:0,136:0:0:136:4835:-435.304,-40.9401,0	1/1:89:0,89:0:0:89:3183:-286.693,-26.7917,0
chr03	25374979	.	G	A	24453	PASS	AB=0.503892;ABP=3.3822;AC=37;AF=0.196809;AN=188;AO=1451;CIGAR=1X;DP=9114;DPB=9114;DPRA=0.864383;EPP=3145.14;EPPR=16491.3;GTI=4;LEN=1;MEANALT=1.07143;MQM=59.9676;MQMR=59.999;NS=94;NUMALT=1;ODDS=1.29909;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51979;QR=273595;RO=7657;RPL=1450;RPP=3145.14;RPPR=16491.3;RPR=1;RUN=1;SAF=1451;SAP=3153.82;SAR=0;SRF=7657;SRP=16630;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:19,45:19:676:45:1616:-126.464,0,-41.9021	0/0:72:71,1:71:2541:1:36:0,-18.0759,-225.341	0/1:185:88,97:88:3168:97:3457:-255.651,0,-229.653	0/0:267:266,0:266:9493:0:0:0,-80.074,-853.971	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:60:30,30:30:1065:30:1080:-79.4515,0,-78.098	0/0:150:150,0:150:5354:0:0:0,-45.1545,-481.993	0/0:126:126,0:126:4497:0:0:0,-37.9298,-404.898	0/1:61:27,34:27:972:34:1224:-92.1042,0,-69.4351	0/0:63:62,1:62:2170:1:36:0,-15.5413,-192.14	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.213	0/0:76:76,0:76:2704:0:0:0,-22.8783,-243.602	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:62:62,0:62:2198:0:0:0,-18.6639,-198.085	0/1:58:31,27:31:1099:27:968:-69.9776,0,-81.7597	0/1:42:24,18:24:860:18:644:-45.6473,0,-65.0786	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	0/0:180:180,0:180:6451:0:0:0,-54.1854,-580.675	0/0:131:131,0:131:4645:0:0:0,-39.4349,-418.213	0/1:129:33,96:33:1179:96:3438:-270.769,0,-67.5844	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.961	0/1:70:45,25:45:1608:25:900:-60.2489,0,-123.938	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/1:275:150,125:150:5367:125:4476:-320.226,0,-400.378	0/0:250:249,0:249:8870:0:0:0,-74.9565,-797.925	0/1:36:10,26:10:356:26:920:-72.2786,0,-21.5442	0/0:270:270,0:270:9648:0:0:0,-81.2781,-868.269	0/0:144:142,2:142:5087:2:72:0,-36.5116,-451.136	0/0:121:121,0:121:4328:0:0:0,-36.4246,-389.696	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:157:157,0:157:5639:0:0:0,-47.2617,-507.628	0/0:170:170,0:170:6045:0:0:0,-51.1751,-544.154	0/1:38:29,9:29:1032:9:320:-17.7032,0,-81.7543	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:113:69,44:69:2464:44:1576:-108.115,0,-187.998	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:112:67,45:67:2408:45:1620:-112.375,0,-183.261	0/1:46:20,26:20:720:26:936:-70.7121,0,-51.2814	0/0:58:58,0:58:2045:0:0:0,-17.4597,-184.318	0/0:71:69,1:69:2476:1:36:0,-17.8337,-219.495	0/0:182:182,0:182:6508:0:0:0,-54.7875,-585.805	0/0:220:220,0:220:7884:0:0:0,-66.2266,-709.585	0/0:123:121,2:121:4332:2:72:0,-30.19,-383.219	0/0:142:142,0:142:5074:0:0:0,-42.7463,-456.802	0/0:124:124,0:124:4432:0:0:0,-37.3277,-399.052	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:129:72,57:72:2568:57:2048:-145.759,0,-192.535	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.882	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:229:123,106:123:4407:106:3782:-271.642,0,-327.857	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:110:110,0:110:3947:0:0:0,-33.1133,-355.42	0/0:100:100,0:100:3560:0:0:0,-30.103,-320.607	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:261:261,0:261:9351:0:0:0,-78.5688,-841.553	0/1:242:132,110:132:4715:110:3948:-282.661,0,-351.661	0/0:74:74,0:74:2616:0:0:0,-22.2762,-235.687	0/0:149:147,1:147:5245:1:36:0,-41.314,-468.589	0/0:168:167,1:167:5980:1:36:0,-46.9748,-534.708	0/1:156:50,106:50:1780:106:3791:-294.427,0,-113.522	0/0:41:41,0:41:1448:0:0:0,-12.3422,-130.613	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:83:51,32:51:1828:32:1152:-79.0047,0,-139.815	0/1:71:34,37:34:1216:37:1324:-98.089,0,-88.3734	0/0:157:157,0:157:5625:0:0:0,-47.2617,-506.369	0/0:217:217,0:217:7780:0:0:0,-65.3235,-700.229	0/1:165:94,69:94:3372:69:2484:-174.385,0,-254.268	0/0:140:140,0:140:5016:0:0:0,-42.1442,-451.586	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:97:43,54:43:1544:54:1913:-143.246,0,-110.053	0/0:119:119,0:119:4233:0:0:0,-35.8226,-381.151	0/0:175:175,0:175:6242:0:0:0,-52.6802,-561.874	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:85:85,0:85:3029:0:0:0,-25.5875,-272.839	0/1:35:20,15:20:716:15:540:-38.4005,0,-54.2317	0/0:121:121,0:121:4305:0:0:0,-36.4246,-387.628	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:52:29,23:29:1040:23:824:-58.8298,0,-78.2608	0/1:132:51,81:51:1816:81:2906:-222.039,0,-123.985	0/1:81:28,53:28:1004:53:1904:-147.254,0,-66.2924	0/0:114:113,1:113:4064:1:36:0,-30.7191,-362.347	0/0:101:101,0:101:3595:0:0:0,-30.404,-323.755
chr03	25377696	.	GTAGTAG	AGTGTAG,GGAGTAG	145242	PASS	AB=0.446743,0.544828;ABP=67.3092,48.5663;AC=153,35;AF=0.81383,0.18617;AN=188;AO=6351,1428;CIGAR=3X4M,1M1X5M;DP=7835;DPB=7834;DPRA=0,0.910063;EPP=13794,3043.37;EPPR=7.35324;GTI=0;LEN=3,1;MEANALT=1.94681,2.53846;MQM=34.498,58.8487;MQMR=60;NS=94;NUMALT=2;ODDS=3.74823;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=215610,50741;QR=63;RO=2;RPL=6351,1421;RPP=13794,3043.37;RPPR=7.35324;RPR=0,7;RUN=1,1;SAF=0,0;SAP=13794,3103.87;SAR=6351,1428;SRF=0;SRP=7.35324;SRR=2;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:18:0,11,7:0:0:11,7:374,252:-48.3013,-20.9194,-17.608,-27.7225,0,-25.6153	1/1:135:0,134,0:0:0:134,0:4538,0:-373.318,-40.338,0,-373.318,-40.338,-373.318	1/2:102:0,41,60:0:0:41,60:1399,2140:-277.359,-174.531,-162.188,-102.91,0,-84.8477	1/1:224:0,223,0:0:0:223,0:7601,0:-626.576,-67.1297,0,-626.576,-67.1297,-626.576	1/1:40:0,39,0:0:0:39,0:1338,0:-110.076,-11.7402,0,-110.076,-11.7402,-110.076	1/1:49:0,49,0:0:0:49,0:1646,0:-136.307,-14.7505,0,-136.307,-14.7505,-136.307	1/2:109:0,49,60:0:0:49,60:1660,2142:-297.469,-174.957,-160.207,-122.843,0,-104.782	1/1:105:0,105,0:0:0:105,0:3568,0:-294.915,-31.6082,0,-294.915,-31.6082,-294.915	1/1:63:0,61,2:0:0:61,2:2079,72:-171.411,-18.3628,0,-165.552,-12.1467,-164.95	1/2:79:0,40,36:0:0:40,36:1350,1279:-203.047,-104.074,-92.0327,-98.9534,0,-88.1163	1/1:64:0,63,0:0:0:63,0:2124,0:-174.318,-18.9649,0,-174.318,-18.9649,-174.318	1/1:68:0,67,0:0:0:67,0:2322,0:-191.582,-20.169,0,-191.582,-20.169,-191.582	1/1:55:0,55,0:0:0:55,0:1890,0:-155.916,-16.5567,0,-155.916,-16.5567,-155.916	1/1:89:0,89,0:0:0:89,0:2999,0:-247.667,-26.7917,0,-247.667,-26.7917,-247.667	1/1:63:0,63,0:0:0:63,0:2169,0:-179.326,-18.9649,0,-179.326,-18.9649,-179.326	1/2:65:0,31,34:0:0:31,34:1057,1220:-177.753,-99.8122,-90.4802,-78.2758,0,-68.0407	1/2:71:0,36,35:0:0:36,35:1209,1243:-190.307,-101.325,-90.4878,-89.314,0,-78.7779	1/1:78:0,78,0:0:0:78,0:2613,0:-216.115,-23.4803,0,-216.115,-23.4803,-216.115	1/2:64:0,26,37:0:0:26,37:838,1277:-165.799,-103.786,-95.9595,-62.0302,0,-50.8921	1/1:107:0,106,1:0:0:106,1:3611,36:-297.941,-31.9092,0,-295.004,-28.6124,-294.703	1/1:133:0,132,0:0:0:132,0:4439,0:-367.344,-39.736,0,-367.344,-39.736,-367.344	1/2:49:0,9,40:0:0:9,40:315,1404:-137.587,-114.235,-111.525,-23.6793,0,-11.6381	1/1:49:0,49,0:0:0:49,0:1661,0:-136.984,-14.7505,0,-136.984,-14.7505,-136.984	1/2:106:0,60,44:0:0:60,44:2062,1563:-279.058,-127.272,-109.21,-151.803,0,-138.557	1/1:36:0,36,0:0:0:36,0:1236,0:-102.259,-10.8371,0,-102.259,-10.8371,-102.259	1/2:273:1,125,146:1:35:125,146:4234,5189:-730.391,-419.238,-384.457,-308.638,0,-267.536	1/1:169:0,168,0:0:0:168,0:5751,0:-474.41,-50.573,0,-474.41,-50.573,-474.41	1/2:31:0,18,13:0:0:18,13:625,468:-84.6726,-38.5285,-33.11,-46.4864,0,-42.573	1/1:185:0,185,0:0:0:185,0:6321,0:-522.132,-55.6906,0,-522.132,-55.6906,-522.132	1/1:143:0,142,1:0:0:142,1:4797,36:-395.531,-42.7463,0,-392.593,-39.449,-392.292	1/1:144:0,142,0:0:0:142,0:4851,0:-400.601,-42.7463,0,-400.601,-42.7463,-400.601	1/2:8:0,5,3:0:0:5,3:160,104:-20.3869,-8.79971,-7.29456,-11.9131,0,-11.0101	1/2:11:0,4,7:0:0:4,7:140,248:-30.857,-20.557,-19.3529,-10.6323,0,-8.52511	1/1:4:0,4,0:0:0:4,0:133,0:-11.1892,-1.20412,0,-11.1892,-1.20412,-11.1892	1/1:7:0,7,0:0:0:7,0:242,0:-20.1996,-2.10721,0,-20.1996,-2.10721,-20.1996	1/1:7:0,7,0:0:0:7,0:239,0:-20.1537,-2.10721,0,-20.1537,-2.10721,-20.1537	1/1:194:0,193,0:0:0:193,0:6653,0:-548.318,-58.0988,0,-548.318,-58.0988,-548.318	1/1:189:0,189,0:0:0:189,0:6421,0:-530.497,-56.8947,0,-530.497,-56.8947,-530.497	1/2:76:0,38,38:0:0:38,38:1296,1342:-204.883,-109.631,-98.1921,-95.5846,0,-84.1455	1/1:1:0,1,0:0:0:1,0:35,0:-3.19904,-0.30103,0,-3.19904,-0.30103,-3.19904	1/2:121:0,44,77:0:0:44,77:1521,2721:-334.242,-221.927,-208.682,-112.645,0,-89.466	1/1:41:0,40,0:0:0:40,0:1359,0:-112.51,-12.0412,0,-112.51,-12.0412,-112.51	1/2:74:0,46,28:0:0:46,28:1504,991:-191.822,-81.0747,-67.2273,-111.081,0,-102.652	1/2:87:0,34,52:0:0:34,52:1180,1851:-237.881,-150.842,-140.607,-87.018,0,-71.3645	1/1:58:0,58,0:0:0:58,0:1977,0:-163.779,-17.4597,0,-163.779,-17.4597,-163.779	1/1:68:0,68,0:0:0:68,0:2304,0:-190.213,-20.47,0,-190.213,-20.47,-190.213	1/1:88:0,88,0:0:0:88,0:2983,0:-246.149,-26.4906,0,-246.149,-26.4906,-246.149	1/1:204:0,202,0:0:0:202,0:6785,0:-561.509,-60.8081,0,-561.509,-60.8081,-561.509	1/1:72:0,72,0:0:0:72,0:2411,0:-199.232,-21.6742,0,-199.232,-21.6742,-199.232	1/1:129:0,129,0:0:0:129,0:4384,0:-361.285,-38.8329,0,-361.285,-38.8329,-361.285	1/1:70:0,69,0:0:0:69,0:2339,0:-193.476,-20.7711,0,-193.476,-20.7711,-193.476	1/1:11:0,11,0:0:0:11,0:384,0:-31.9423,-3.31133,0,-31.9423,-3.31133,-31.9423	1/2:125:0,47,78:0:0:47,78:1621,2771:-345.541,-225.962,-211.813,-119.91,0,-96.4299	1/1:42:0,42,0:0:0:42,0:1378,0:-114.059,-12.6433,0,-114.059,-12.6433,-114.059	1/2:20:0,4,16:0:0:4,16:140,563:-56.4711,-46.165,-44.9609,-10.6323,0,-5.81584	1/2:107:0,60,47:0:0:60,47:2033,1672:-286.756,-136.574,-118.512,-150.518,0,-136.37	1/1:35:0,34,0:0:0:34,0:1131,0:-93.3609,-10.235,0,-93.3609,-10.235,-93.3609	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chr03	25388396	.	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chr03	25388438	.	T	G	156562	PASS	AB=0.467143;ABP=29.2665;AC=153;AF=0.81383;AN=188;AO=7226;CIGAR=1X;DP=8733;DPB=8733;DPRA=0;EPP=15694.1;EPPR=3245.04;GTI=0;LEN=1;MEANALT=1.05319;MQM=53.7328;MQMR=59.2318;NS=94;NUMALT=1;ODDS=2.37727;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257213;QR=53796;RO=1501;RPL=7226;RPP=15694.1;RPPR=3245.04;RPR=0;RUN=1;SAF=0;SAP=15694.1;SAR=7226;SRF=0;SRP=3262.39;SRR=1501;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:25,13:25:900:13:464:-30.6166,0,-69.8819	1/1:122:0,121:0:0:121:4321:-387.933,-36.4246,0	0/1:69:32,37:32:1152:37:1326:-98.5762,0,-83.2191	1/1:232:0,231:0:0:231:8235:-738.416,-69.5379,0	1/1:65:0,65:0:0:65:2323:-208.699,-19.567,0	1/1:68:0,68:0:0:68:2407:-215.739,-20.47,0	0/1:148:75,72:75:2654:72:2569:-186.42,0,-193.932	1/1:159:0,159:0:0:159:5684:-510.041,-47.8638,0	1/1:54:0,52:0:0:52:1834:-164.826,-15.6536,0	0/1:73:32,41:32:1144:41:1472:-110.044,0,-81.2881	1/1:75:0,75:0:0:75:2680:-240.872,-22.5773,0	1/1:76:0,76:0:0:76:2685:-241.376,-22.8783,0	1/1:73:0,73:0:0:73:2605:-233.027,-21.9752,0	1/1:83:0,83:0:0:83:2952:-265.543,-24.9855,0	1/1:74:0,74:0:0:74:2631:-236.032,-22.2762,0	0/1:81:37,44:37:1328:44:1563:-116.394,0,-95.3489	0/1:65:35,30:35:1260:30:1076:-77.4942,0,-94.0971	1/1:98:0,98:0:0:98:3495:-313.757,-29.5009,0	0/1:78:47,31:47:1688:31:1103:-76.0078,0,-128.567	1/1:153:0,153:0:0:153:5472:-491.357,-46.0576,0	1/1:137:0,136:0:0:136:4843:-434.748,-40.9401,0	0/1:97:58,39:58:2053:39:1380:-95.0285,0,-155.713	1/1:38:0,38:0:0:38:1364:-122.797,-11.4391,0	0/1:88:52,36:52:1868:36:1292:-89.9301,0,-141.898	1/1:73:1,72:1:36:72:2551:-225.34,-18.3769,0	0/1:334:186,148:186:6646:148:5284:-374.254,0,-496.971	1/1:149:1,148:1:36:148:5240:-466.51,-41.2552,0	0/1:48:28,20:28:1004:20:716:-49.9741,0,-76.2115	1/1:246:0,246:0:0:246:8780:-788.887,-74.0534,0	1/1:114:3,111:3:108:111:3951:-345.118,-24.2423,0	1/1:101:0,101:0:0:101:3620:-324.836,-30.404,0	0/1:5:4,1:4:144:1:36:-2.08802,0,-11.8085	0/1:19:13,6:13:468:6:212:-13.6812,0,-36.7224	1/1:6:0,6:0:0:6:216:-19.7701,-1.80618,0	1/1:7:0,7:0:0:7:235:-21.4607,-2.10721,0	1/1:15:0,15:0:0:15:536:-48.5298,-4.51545,0	1/1:196:0,196:0:0:196:6966:-624.993,-59.0019,0	1/1:86:0,86:0:0:86:3072:-276.062,-25.8886,0	0/1:85:44,41:44:1584:41:1442:-104.277,0,-117.06	1/1:6:0,6:0:0:6:212:-19.3995,-1.80618,0	0/1:147:66,81:66:2368:81:2880:-214.522,0,-168.654	1/1:48:0,48:0:0:48:1712:-154.166,-14.4494,0	0/1:107:50,57:50:1800:57:2031:-150.254,0,-130.053	0/1:76:41,35:41:1472:35:1248:-89.3941,0,-109.07	1/1:71:0,71:0:0:71:2509:-225.69,-21.3731,0	1/1:79:0,79:0:0:79:2794:-251.035,-23.7814,0	1/1:101:0,101:0:0:101:3599:-323.118,-30.404,0	1/1:129:0,129:0:0:129:4590:-411.939,-38.8329,0	1/1:167:0,167:0:0:167:5952:-534.045,-50.272,0	1/1:136:0,136:0:0:136:4854:-435.298,-40.9401,0	1/1:158:0,158:0:0:158:5639:-506.571,-47.5627,0	1/1:24:0,24:0:0:24:856:-77.142,-7.22472,0	0/1:114:61,53:61:2175:53:1896:-136.133,0,-161.499	1/1:108:0,108:0:0:108:3860:-346.645,-32.5112,0	0/1:20:7,13:7:252:13:455:-35.2112,0,-17.0084	0/1:70:37,33:37:1328:33:1180:-85.0545,0,-98.6739	1/1:25:0,25:0:0:25:885:-79.6005,-7.52575,0	0/1:17:9,8:9:324:8:288:-21.1228,0,-24.385	0/1:27:17,10:17:608:10:352:-23.8542,0,-46.9209	1/1:91:0,91:0:0:91:3215:-288.899,-27.3937,0	1/1:111:2,109:2:72:109:3879:-341.725,-26.5841,0	0/1:4:2,2:2:72:2:72:-5.61958,0,-5.6326	1/1:234:0,234:0:0:234:8331:-748.691,-70.441,0	0/1:139:69,70:69:2480:70:2508:-182.784,0,-181.366	1/1:61:0,61:0:0:61:2160:-194.138,-18.3628,0	1/1:90:0,90:0:0:90:3215:-288.47,-27.0927,0	1/1:142:2,140:2:72:140:4935:-436.337,-35.9394,0	0/1:50:39,11:39:1392:11:396:-20.8643,0,-110.506	1/1:26:0,26:0:0:26:932:-83.961,-7.82678,0	1/1:85:0,85:0:0:85:2997:-269.364,-25.5876,0	1/1:109:0,109:0:0:109:3894:-349.992,-32.8123,0	1/1:24:0,24:0:0:24:843:-76.0811,-7.22472,0	0/1:125:63,62:63:2264:62:2215:-161.735,0,-166.35	0/1:69:29,40:29:1044:40:1423:-107.371,0,-73.4639	1/1:155:0,155:0:0:155:5512:-495.06,-46.6597,0	1/1:144:0,144:0:0:144:5103:-458.047,-43.3483,0	0/1:110:53,57:53:1904:57:2032:-149.658,0,-138.027	1/1:121:0,121:0:0:121:4306:-387.066,-36.4246,0	0/1:11:6,5:6:216:5:176:-12.8587,0,-16.1385	0/1:130:76,54:76:2736:54:1924:-133.951,0,-207.326	1/1:134:0,134:0:0:134:4779:-429.531,-40.338,0	1/1:210:0,210:0:0:210:7467:-670.444,-63.2163,0	1/1:92:0,92:0:0:92:3284:-295.05,-27.6948,0	1/1:50:0,50:0:0:50:1782:-160.334,-15.0515,0	0/1:81:38,43:38:1368:43:1536:-113.876,0,-99.025	1/1:126:0,126:0:0:126:4457:-400.22,-37.9298,0	0/1:30:19,11:19:684:11:387:-26.0208,0,-52.6687	1/1:57:0,57:0:0:57:2048:-184.09,-17.1587,0	1/1:70:0,70:0:0:70:2495:-224.585,-21.0721,0	0/1:68:30,38:30:1080:38:1343:-100.416,0,-76.1853	0/1:101:57,44:57:2040:44:1563:-110.358,0,-153.411	0/1:76:54,22:54:1936:22:766:-46.1049,0,-151.613	1/1:136:1,135:1:36:135:4781:-425.277,-37.3418,0	1/1:113:0,113:0:0:113:4032:-362.271,-34.0164,0
chr03	25399637	.	T	A	24092.2	PASS	AB=0.493118;ABP=4.23563;AC=34;AF=0.182796;AN=186;AO=1482;CIGAR=1X;DP=9715;DPB=9715;DPRA=0.971849;EPP=3221.13;EPPR=17815.6;GTI=1;LEN=1;MEANALT=1.02326;MQM=59.8981;MQMR=59.9852;NS=93;NUMALT=1;ODDS=8.00502;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52562;QR=294674;RO=8227;RPL=1482;RPP=3221.13;RPPR=17798.3;RPR=0;RUN=1;SAF=1482;SAP=3221.13;SAR=0;SRF=8225;SRP=17850.3;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:40,43:40:1436:43:1544:-113.908,0,-104.192	0/0:113:113,0:113:4042:0:0:0,-34.0164,-363.967	0/1:168:79,89:79:2823:89:3161:-234.137,0,-203.736	0/0:268:268,0:268:9578:0:0:0,-80.676,-861.973	0/0:70:70,0:70:2484:0:0:0,-21.0721,-223.812	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:116:73,43:73:2620:43:1525:-102.623,0,-201.12	0/0:198:198,0:198:7071:0:0:0,-59.6039,-636.449	0/0:165:164,1:164:5856:1:36:0,-46.0717,-523.552	0/1:83:44,39:44:1584:39:1392:-100.594,0,-117.866	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:134:134,0:134:4799:0:0:0,-40.338,-432.06	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/1:70:46,24:46:1656:24:860:-56.6497,0,-128.256	0/1:35:19,16:19:665:16:572:-41.2774,0,-49.6367	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.664	0/1:45:19,26:19:684:26:912:-68.8468,0,-48.344	0/0:258:258,0:258:9268:0:0:0,-77.6657,-834.083	0/0:253:253,0:253:9079:0:0:0,-76.1606,-817.081	0/1:99:42,57:42:1512:57:2021:-152.359,0,-106.573	0/0:139:139,0:139:4983:0:0:0,-41.8432,-448.617	0/1:70:42,28:42:1496:28:1000:-69.2433,0,-113.862	0/0:117:116,1:116:4152:1:36:0,-31.6222,-370.265	0/1:301:172,129:172:6171:129:4550:-319.049,0,-464.876	0/0:195:195,0:195:7000:0:0:0,-58.7008,-630.053	0/1:42:18,24:18:648:24:856:-64.7178,0,-46.0086	0/0:267:266,1:266:9518:1:36:0,-76.7767,-852.976	0/0:106:102,4:102:3650:4:144:0,-18.5956,-315.376	0/0:92:91,1:91:3259:1:36:0,-24.0965,-289.932	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:17:14,3:14:504:3:104:-4.5853,0,-40.5806	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:220:220,0:220:7875:0:0:0,-66.2266,-708.728	0/0:113:113,0:113:4064:0:0:0,-34.0164,-365.945	0/1:34:13,21:13:468:21:741:-56.7766,0,-32.2246	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:139:83,56:83:2988:56:2008:-139.15,0,-227.308	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:198:107,91:107:3848:91:3158:-224.834,0,-286.91	0/1:83:47,36:47:1688:36:1264:-89.0454,0,-127.216	0/0:79:79,0:79:2831:0:0:0,-23.7814,-255.028	0/0:186:186,0:186:6675:0:0:0,-55.9916,-600.824	0/0:117:117,0:117:4193:0:0:0,-35.2205,-377.549	0/0:211:211,0:211:7525:0:0:0,-63.5173,-677.29	0/0:110:110,0:110:3939:0:0:0,-33.1133,-354.544	0/0:126:125,0:125:4475:0:0:0,-37.6287,-402.559	0/0:146:146,0:146:5233:0:0:0,-43.9504,-471.105	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:118:59,59:59:2116:59:2106:-154.286,0,-155.187	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:153:73,80:73:2615:80:2837:-209.425,0,-189.539	0/0:78:78,0:78:2787:0:0:0,-23.4803,-251.069	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:76:76,0:76:2714:0:0:0,-22.8783,-244.503	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:164:163,1:163:5832:1:36:0,-45.7706,-521.395	0/1:204:118,86:118:4227:86:3061:-214.307,0,-319.199	0/0:66:66,0:66:2336:0:0:0,-19.868,-210.498	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.027	0/0:214:214,0:214:7659:0:0:0,-64.4204,-689.345	0/1:140:48,92:48:1724:92:3255:-251.024,0,-113.301	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/0:34:34,0:34:1202:0:0:0,-10.235,-108.484	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:65:32,33:32:1148:33:1159:-85.0474,0,-84.0629	0/1:119:63,56:63:2259:56:2004:-144.811,0,-167.749	0/0:162:162,0:162:5794:0:0:0,-48.7669,-521.573	0/0:226:224,2:224:8039:2:72:0,-61.1961,-716.689	0/1:112:53,59:53:1904:59:2069:-152.732,0,-137.922	0/0:135:134,1:134:4803:1:36:0,-37.0408,-428.826	0/1:19:7,12:7:248:12:417:-32.133,0,-16.9446	0/1:110:45,65:45:1612:65:2323:-176.217,0,-112.257	0/0:147:147,0:147:5275:0:0:0,-44.2514,-474.884	0/0:223:223,0:223:7995:0:0:0,-67.1297,-719.569	0/0:59:59,0:59:2085:0:0:0,-17.7608,-187.916	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.044	0/1:69:39,30:39:1404:30:1080:-76.7422,0,-105.888	0/0:172:171,1:171:6136:1:36:0,-48.1789,-548.74	0/1:37:19,18:19:680:18:644:-47.1525,0,-50.3911	0/0:67:65,0:65:2318:0:0:0,-19.5669,-208.519	0/0:88:88,0:88:3155:0:0:0,-26.4906,-284.174	0/1:30:19,11:19:684:11:396:-26.9518,0,-52.8594	0/1:94:40,54:40:1432:54:1906:-143.517,0,-100.881	0/1:81:24,57:24:864:57:2025:-158.138,0,-53.6991	0/0:146:146,0:146:5239:0:0:0,-43.9504,-471.645	0/0:105:105,0:105:3741:0:0:0,-31.6081,-336.887
chr03	25525705	.	CGACA	TGACA,TGACG	179028	PASS	AB=0.472092,0.521671;ABP=24.7054,16.0926;AC=151,37;AF=0.803191,0.196809;AN=188;AO=7069,1693;CIGAR=1X4M,1X3M1X;DP=8809;DPB=8810.6;DPRA=0,1.07124;EPP=15257.8,3592.97;EPPR=11.6962;GTI=0;LEN=1,5;MEANALT=1.89362,2.3617;MQM=38.664,41.1512;MQMR=53.5;NS=94;NUMALT=2;ODDS=1.80328;PAIRED=0,0;PAIREDR=0;PAO=4.5,4.5;PQA=162,162;PQR=0;PRO=0;QA=249942,59029;QR=138;RO=4;RPL=63,18;RPP=14810.8,3524.63;RPPR=11.6962;RPR=7006,1675;RUN=1,1;SAF=52,8;SAP=14904.8,3610.15;SAR=7017,1685;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,12,30:0:0:12,30:422,1051:-114.245,-83.1324,-79.52,-31.4391,0,-22.4082	1/1:165:0,164,0:0:0:164,0:5796,0:-478.248,-49.3689,0,-478.248,-49.3689,-478.248	1/2:138:0,73,61:0:0:73,61:2537,2117:-353.813,-166.111,-144.136,-187.673,0,-169.31	1/1:169:0,169,0:0:0:169,0:5978,0:-515.466,-50.8741,0,-515.466,-50.8741,-515.466	1/1:97:0,97,0:0:0:97,0:3417,0:-291.025,-29.1999,0,-291.025,-29.1999,-291.025	1/1:64:0,63,1:0:0:63,1:2217,36:-183.496,-18.9649,0,-180.664,-15.7852,-180.363	1/2:122:2,61,59:2:71:61,59:2139,2063:-322.197,-156.991,-144.406,-160.014,0,-148.031	1/1:204:0,202,1:0:0:202,1:7128,36:-589.586,-60.8081,0,-587.585,-58.8033,-587.284	1/1:71:0,69,0:0:0:69,0:2446,0:-202.418,-20.7711,0,-202.418,-20.7711,-202.418	1/2:110:0,45,64:0:0:45,64:1616,2249:-302.965,-176.949,-163.402,-126.106,0,-106.84	1/1:22:0,22,0:0:0:22,0:775,0:-67.2567,-6.62266,0,-67.2567,-6.62266,-67.2567	1/1:36:0,36,0:0:0:36,0:1284,0:-106.276,-10.8371,0,-106.276,-10.8371,-106.276	1/1:40:0,39,0:0:0:39,0:1343,0:-110.816,-11.7402,0,-110.816,-11.7402,-110.816	1/1:37:0,37,0:0:0:37,0:1328,0:-112.729,-11.1381,0,-112.729,-11.1381,-112.729	1/1:34:0,34,0:0:0:34,0:1184,0:-101.895,-10.235,0,-101.895,-10.235,-101.895	1/2:22:0,7,15:0:0:7,15:252,514:-59.2439,-40.0859,-37.9787,-19.4924,0,-14.977	1/2:39:0,28,11:0:0:28,11:961,393:-102.1,-31.2796,-22.8507,-71.1576,0,-67.8463	1/1:27:0,27,0:0:0:27,0:964,0:-80.0543,-8.12781,0,-80.0543,-8.12781,-80.0543	1/2:26:0,15,11:0:0:15,11:540,386:-70.763,-30.7478,-26.2324,-40.3513,0,-37.04	1/1:261:0,258,1:0:0:258,1:9155,33:-789.918,-77.6657,0,-787.807,-75.568,-787.506	1/1:109:0,109,0:0:0:109,0:3822,0:-323.616,-32.8123,0,-323.616,-32.8123,-323.616	1/2:209:0,77,132:0:0:77,132:2737,4637:-583.935,-367.254,-344.075,-217.026,0,-177.29	1/1:50:0,49,1:0:0:49,1:1730,30:-149.409,-14.7505,0,-147.282,-12.3523,-146.981	1/2:129:0,62,67:0:0:62,67:2204,2336:-349.413,-181.489,-162.826,-168.257,0,-148.088	1/1:73:0,72,0:0:0:72,0:2512,0:-212.254,-21.6742,0,-212.254,-21.6742,-212.254	1/2:356:0,185,169:0:0:185,169:6523,5909:-984.668,-470.708,-415.018,-514.034,0,-463.16	1/1:149:0,149,0:0:0:149,0:5276,0:-447.691,-44.8535,0,-447.691,-44.8535,-447.691	1/2:14:0,8,6:0:0:8,6:284,210:-37.603,-15.869,-13.4608,-22.0613,0,-20.2551	1/1:226:0,224,0:0:0:224,0:7983,0:-697.444,-67.4307,0,-697.444,-67.4307,-697.444	1/1:178:0,169,8:0:0:169,8:5936,271:-503.124,-50.8741,0,-482.192,-29.8134,-479.784	1/1:121:0,121,0:0:0:121,0:4277,0:-369.112,-36.4246,0,-369.112,-36.4246,-369.112	1/2:11:0,5,6:0:0:5,6:176,209:-29.4997,-16.0129,-14.5078,-13.8157,0,-12.0096	1/2:22:0,12,10:0:0:12,10:431,348:-60.3288,-27.5616,-23.9493,-33.1035,0,-30.0932	1/1:7:0,7,0:0:0:7,0:240,0:-20.0174,-2.10721,0,-20.0174,-2.10721,-20.0174	1/1:14:0,14,0:0:0:14,0:486,0:-40.4066,-4.21442,0,-40.4066,-4.21442,-40.4066	1/1:12:0,12,0:0:0:12,0:427,0:-35.5053,-3.61236,0,-35.5053,-3.61236,-35.5053	1/1:96:0,95,1:0:0:95,1:3373,35:-294.002,-28.5979,0,-291.711,-26.0181,-291.41	1/1:248:0,247,0:0:0:247,0:8754,0:-743.352,-74.3544,0,-743.352,-74.3544,-743.352	1/2:28:0,18,10:0:0:18,10:639,355:-75.8146,-28.3058,-22.8873,-47.8468,0,-44.8365	1/2:8:0,6,2:0:0:6,2:207,71:-21.7183,-5.89137,-4.08519,-16.1649,0,-15.5629	1/2:180:0,101,79:0:0:101,79:3551,2759:-485.636,-215.108,-184.703,-270.802,0,-247.021	1/1:19:0,19,0:0:0:19,0:663,0:-56.2299,-5.71957,0,-56.2299,-5.71957,-56.2299	1/2:159:0,82,76:0:0:82,76:2875,2658:-427.109,-207.788,-183.104,-219.177,0,-196.299	1/2:20:1,5,14:1:36:5,14:180,497:-50.094,-36.3112,-37.7398,-11.1377,0,-9.85827	1/1:36:0,36,0:0:0:36,0:1247,0:-107.927,-10.8371,0,-107.927,-10.8371,-107.927	1/1:107:0,105,0:0:0:105,0:3741,0:-327.134,-31.6082,0,-327.134,-31.6082,-327.134	1/1:135:0,135,0:0:0:135,0:4747,0:-393.422,-40.6391,0,-393.422,-40.6391,-393.422	1/1:209:0,208,0:0:0:208,0:7397,0:-638.518,-62.6142,0,-638.518,-62.6142,-638.518	1/1:131:0,131,0:0:0:131,0:4615,0:-398.251,-39.4349,0,-398.251,-39.4349,-398.251	1/1:130:0,130,0:0:0:130,0:4638,0:-400.716,-39.1339,0,-400.716,-39.1339,-400.716	1/1:159:0,159,0:0:0:159,0:5659,0:-495.009,-47.8638,0,-495.009,-47.8638,-495.009	1/1:12:0,12,0:0:0:12,0:419,0:-36.5608,-3.61236,0,-36.5608,-3.61236,-36.5608	1/2:175:0,88,87:0:0:88,87:3120,3015:-468.888,-236.967,-210.476,-232.252,0,-206.063	1/1:105:0,104,0:0:0:104,0:3708,0:-324.093,-31.3071,0,-324.093,-31.3071,-324.093	1/2:19:0,10,9:0:0:10,9:356,306:-50.8666,-24.4074,-21.3971,-26.7883,0,-24.0791	1/2:130:0,53,77:0:0:53,77:1894,2669:-349.903,-205.4,-189.446,-144.836,0,-121.657	1/1:20:0,20,0:0:0: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chr03	25525746	.	C	A	142757	PASS	AB=0.477181;ABP=17.5782;AC=151;AF=0.803191;AN=188;AO=7201;CIGAR=1X;DP=8902;DPB=8902;DPRA=0;EPP=15631.1;EPPR=3640.41;GTI=0;LEN=1;MEANALT=1.02128;MQM=38.4311;MQMR=41.3049;NS=94;NUMALT=1;ODDS=1.38519;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257830;QR=60638;RO=1699;RPL=7200;RPP=15631.1;RPPR=3640.41;RPR=1;RUN=1;SAF=0;SAP=15639.8;SAR=7201;SRF=0;SRP=3692.34;SRR=1699;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:30,13:30:1072:13:468:-25.3122,0,-80.9354	1/1:169:0,169:0:0:169:6042:-493.205,-50.8741,0	0/1:142:65,77:65:2328:77:2756:-181.554,0,-160.769	1/1:172:0,172:0:0:172:6171:-528.479,-51.7772,0	1/1:86:0,86:0:0:86:3054:-256.53,-25.8886,0	1/1:63:1,62:1:36:62:2232:-179.165,-15.4842,0	0/1:123:58,65:58:2076:65:2324:-161.808,0,-144.695	1/1:209:0,209:0:0:209:7474:-612.66,-62.9153,0	1/1:71:0,71:0:0:71:2525:-207.063,-21.3731,0	0/1:112:65,47:65:2321:47:1692:-111.072,0,-168.18	1/1:23:0,23:0:0:23:824:-70.9159,-6.92369,0	1/1:39:0,39:0:0:39:1381:-114.291,-11.7402,0	1/1:39:0,39:0:0:39:1404:-112.611,-11.7402,0	1/1:37:0,37:0:0:37:1328:-112.729,-11.1381,0	1/1:34:0,34:0:0:34:1224:-102.958,-10.235,0	0/1:21:14,7:14:504:7:252:-15.278,0,-37.5504	0/1:39:11,28:11:396:28:1008:-69.3837,0,-23.0668	1/1:27:0,27:0:0:27:968:-79.7666,-8.12781,0	0/1:24:9,15:9:324:15:536:-37.4203,0,-21.317	1/1:267:0,267:0:0:267:9558:-818.594,-80.375,0	1/1:114:0,114:0:0:114:4081:-340.238,-34.3174,0	0/1:200:126,74:126:4513:74:2645:-170.114,0,-334.055	1/1:54:1,53:1:36:53:1889:-159.4,-13.3529,0	0/1:128:65,63:65:2313:63:2245:-151.374,0,-160.444	1/1:70:0,70:0:0:70:2516:-209.722,-21.0721,0	0/1:351:172,179:172:6131:179:6417:-451.468,0,-434.18	1/1:151:0,151:0:0:151:5417:-457.382,-45.4555,0	0/1:14:6,8:6:216:8:288:-20.5151,0,-13.7732	1/1:232:0,232:0:0:232:8295:-722.312,-69.839,0	1/1:180:7,173:7:252:173:6208:-498.918,-32.6893,0	1/1:123:0,123:0:0:123:4416:-377.786,-37.0267,0	0/1:11:6,5:6:216:5:180:-12.2716,0,-15.0299	0/1:23:11,12:11:392:12:413:-28.4166,0,-27.4411	1/1:7:0,7:0:0:7:252:-20.2676,-2.10721,0	1/1:14:0,14:0:0:14:500:-40.7352,-4.21442,0	1/1:12:0,12:0:0:12:432:-35.6703,-3.61236,0	1/1:94:0,94:0:0:94:3384:-293.614,-28.2968,0	1/1:245:0,245:0:0:245:8792:-739.378,-73.7524,0	0/1:28:11,17:11:396:17:612:-42.4564,0,-26.4564	0/1:8:2,6:2:72:6:216:-16.2236,0,-4.15529	0/1:182:79,103:79:2810:103:3644:-252.83,0,-187.707	1/1:19:0,19:0:0:19:669:-56.3124,-5.71957,0	0/1:163:76,87:76:2736:87:3117:-214.061,0,-187.818	0/1:22:14,8:14:504:8:273:-17.5248,0,-37.7196	1/1:36:0,36:0:0:36:1296:-111.259,-10.8371,0	1/1:105:0,105:0:0:105:3780:-330.454,-31.6082,0	1/1:136:0,136:0:0:136:4849:-396.452,-40.9401,0	1/1:215:0,215:0:0:215:7694:-663.019,-64.7215,0	1/1:130:0,130:0:0:130:4616:-395.963,-39.1339,0	1/1:138:0,138:0:0:138:4956:-427.287,-41.5421,0	1/1:165:0,165:0:0:165:5913:-514.738,-49.67,0	1/1:12:0,12:0:0:12:432:-37.404,-3.61236,0	0/1:174:88,86:88:3141:86:3091:-201.979,0,-220.404	1/1:104:0,104:0:0:104:3732:-324.912,-31.3071,0	0/1:20:10,10:10:360:10:360:-24.0005,0,-25.7321	0/1:133:78,55:78:2759:55:1976:-127.145,0,-195.082	1/1:20:0,20:0:0:20:720:-61.3769,-6.0206,0	0/1:22:6,16:6:216:16:576:-42.3071,0,-12.826	0/1:30:13,17:13:468:17:612:-43.9612,0,-32.6954	1/1:144:0,144:0:0:144:5134:-433.401,-43.3483,0	1/1:87:1,86:1:36:86:3092:-259.867,-22.6869,0	0/1:3:2,1:2:72:1:36:-2.5514,0,-5.75204	1/1:246:0,246:0:0:246:8840:-767.568,-74.0534,0	0/1:239:127,112:127:4522:112:4017:-274.479,0,-321.189	1/1:80:0,80:0:0:80:2857:-239.995,-24.0824,0	1/1:95:0,95:0:0:95:3416:-293.093,-28.5979,0	1/1:171:3,168:3:108:168:6017:-506.706,-41.6686,0	0/1:215:158,57:158:5588:57:2022:-108.441,0,-422.074	1/1:14:0,14:0:0:14:504:-43.0225,-4.21442,0	1/1:72:0,72:0:0:72:2577:-211.745,-21.6742,0	1/1:57:0,57:0:0:57:2052:-178.3,-17.1587,0	1/1:26:0,26:0:0:26:924:-79.3532,-7.82678,0	0/1:163:84,79:84:2986:79:2817:-182.391,0,-210.385	0/1:54:22,32:22:792:32:1148:-78.8096,0,-53.2144	1/1:175:0,175:0:0:175:6252:-524.878,-52.6803,0	1/1:145:0,145:0:0:145:5204:-447.252,-43.6494,0	0/1:161:74,87:74:2626:87:3105:-205.094,0,-179.264	1/1:101:2,99:2:72:99:3540:-283.937,-23.7907,0	0/1:32:11,21:11:396:21:752:-51.99,0,-25.174	0/1:93:52,41:52:1856:41:1476:-95.3132,0,-131.544	1/1:119:0,119:0:0:119:4243:-345.435,-35.8226,0	1/1:211:0,211:0:0:211:7580:-649.824,-63.5173,0	0/1:65:37,28:37:1332:28:1008:-64.7886,0,-96.1988	1/1:20:0,20:0:0:20:716:-60.5124,-6.0206,0	0/1:30:13,17:13:468:17:612:-44.1683,0,-30.7115	1/1:55:0,55:0:0:55:1976:-168.207,-16.5567,0	0/1:28:16,12:16:568:12:432:-27.5305,0,-41.4736	1/1:37:0,37:0:0:37:1322:-108.234,-11.1381,0	1/1:48:0,47:0:0:47:1688:-135.038,-14.1484,0	0/1:33:16,17:16:576:17:612:-41.8162,0,-39.9673	0/1:60:33,27:33:1188:27:972:-64.042,0,-84.8689	0/1:32:24,8:24:864:8:279:-14.877,0,-66.03	1/1:133:0,132:0:0:132:4710:-401.916,-39.736,0	1/1:33:0,33:0:0:33:1173:-100.528,-9.93399,0
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chr03	25638790	.	T	C	7124.42	PASS	AB=0.489552;ABP=3.64554;AC=34;AF=0.182796;AN=186;AO=337;CIGAR=1X;DP=1862;DPB=1862;DPRA=1.24281;EPP=3.53223;EPPR=265.069;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=93;NUMALT=1;ODDS=0.544542;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=11919;QR=54562;RO=1525;RPL=0;RPP=734.797;RPPR=3314.51;RPR=337;RUN=1;SAF=164;SAP=3.53223;SAR=173;SRF=548;SRP=265.069;SRR=977;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:17:9,8:9:324:8:280:-20.4218,0,-24.3883	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:29:12,17:12:432:17:593:-44.9648,0,-30.4913	0/1:37:9,28:9:324:28:968:-76.2906,0,-18.3677	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/1:56:37,19:37:1332:19:680:-44.6715,0,-103.325	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:78:48,30:48:1720:30:1072:-73.3121,0,-131.605	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.871	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:31:11,20:11:392:20:716:-55.4358,0,-26.2881	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	.:.:.:.:.:.:.:.	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:25:24,1:24:851:1:36:0,-3.92747,-73.3112	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:14:4,10:4:144:10:343:-26.9861,0,-9.0992	0/0:51:51,0:51:1808:0:0:0,-15.3525,-162.999	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:4:1,3:1:36:3:93:-7.47261,0,-2.39415	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:38:14,24:14:500:24:856:-65.922,0,-33.897	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:48:17,31:17:608:31:1086:-83.5981,0,-40.6026	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:99:83,16:83:2971:16:568:-21.6499,0,-237.82	0/1:42:19,23:19:684:23:827:-62.1107,0,-49.2471	0/1:31:7,24:7:252:24:845:-67.0352,0,-13.697	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:54:53,1:53:1896:1:36:0,-12.6573,-167.32
chr03	25654603	.	G	T	12938.8	PASS	AB=0.535082;ABP=18.0936;AC=37;AF=0.198925;AN=186;AO=759;CIGAR=1X;DP=3786;DPB=3786;DPRA=1.01016;EPP=1625.2;EPPR=6463.63;GTI=1;LEN=1;MEANALT=1;MQM=59.9565;MQMR=59.9805;NS=93;NUMALT=1;ODDS=2.29048;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27135;QR=107776;RO=3027;RPL=756;RPP=1625.2;RPPR=6463.63;RPR=3;RUN=1;SAF=0;SAP=1651.16;SAR=759;SRF=0;SRP=6576.06;SRR=3027;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:12,16:12:424:16:572:-43.3846,0,-30.0676	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:65:34,31:34:1212:31:1101:-79.8323,0,-89.8194	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.875	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:20:20,0:20:704:0:0:0,-6.0206,-63.6845	0/1:55:12,43:12:413:43:1540:-122.336,0,-20.9412	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:73:72,1:72:2559:1:36:0,-18.3769,-226.962	0/1:33:21,12:21:756:12:432:-29.2872,0,-58.4332	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:54:54,0:54:1893:0:0:0,-16.2556,-170.646	0/0:54:54,0:54:1909:0:0:0,-16.2556,-172.085	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/1:37:17,20:17:595:20:716:-53.6296,0,-42.7386	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/1:22:7,15:7:252:15:536:-41.9522,0,-16.4063	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.4	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/1:19:3,16:3:108:16:565:-45.46,0,-4.3556	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/1:120:64,56:64:2275:56:1988:-143.032,0,-168.888	0/0:69:69,0:69:2431:0:0:0,-20.7711,-219.047	0/1:27:15,12:15:531:12:432:-31.0934,0,-39.9941	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:39:38,1:38:1359:1:36:0,-8.14189,-119.012	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:12:7,5:7:252:5:165:-11.5612,0,-19.4166	.:.:.:.:.:.:.:.	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/0:56:56,0:56:2012:0:0:0,-16.8577,-180.416	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:44:18,26:18:636:26:936:-71.3141,0,-44.3227	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/1:87:49,38:49:1730:38:1359:-96.4209,0,-129.794	0/1:33:12,21:12:423:21:756:-58.4332,0,-28.4711	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:67:36,31:36:1283:31:1108:-79.862,0,-95.6036	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:13:2,11:2:72:11:388:-31.344,0,-2.92333	0/1:43:24,19:24:860:19:684:-48.946,0,-64.7775	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:89:35,54:35:1248:54:1925:-146.734,0,-85.8332	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:22:22,0:22:763:0:0:0,-6.62266,-68.9885	0/0:73:72,1:72:2563:1:36:0,-18.3769,-227.322	0/1:70:18,52:18:648:52:1856:-146.248,0,-37.5798	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:59:30,29:30:1058:29:1028:-75.07,0,-77.7688	0/1:62:34,28:34:1220:28:1000:-71.6515,0,-91.4429	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.817	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/1:35:22,13:22:792:13:468:-31.9236,0,-61.0696	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:34:7,27:7:252:27:968:-77.2023,0,-12.7939	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:76:76,0:76:2711:0:0:0,-22.8783,-244.234	0/1:77:41,36:41:1468:36:1296:-93.7646,0,-109.237	0/0:58:58,0:58:2046:0:0:0,-17.4597,-184.411	0/1:40:20,20:20:708:20:716:-52.7265,0,-52.0044	0/0:77:77,0:77:2717:0:0:0,-23.1793,-244.774	0/1:34:14,20:14:496:20:720:-54.8938,0,-34.6932	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.401	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/1:21:9,12:9:324:12:428:-32.5372,0,-23.1842	0/1:47:24,23:24:864:23:828:-60.6957,0,-63.9342	0/1:51:24,27:24:847:27:968:-72.0848,0,-61.1962	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:68:68,0:68:2418:0:0:0,-20.47,-217.875
chr03	25682709	.	T	C	36968.7	PASS	AB=0.510699;ABP=6.1698;AC=37;AF=0.198925;AN=186;AO=1641;CIGAR=1X;DP=9366;DPB=9366;DPRA=1.00088;EPP=3531.74;EPPR=16684.4;GTI=4;LEN=1;MEANALT=1.04444;MQM=59.9878;MQMR=59.9817;NS=93;NUMALT=1;ODDS=0.973813;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58104;QR=275843;RO=7722;RPL=833;RPP=3.83734;RPPR=7.91003;RPR=808;RUN=1;SAF=837;SAP=4.45133;SAR=804;SRF=3805;SRP=6.53775;SRR=3917;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:25,26:25:892:26:926:-68.3055,0,-65.2472	0/0:160:159,1:159:5697:1:36:0,-44.5665,-509.239	0/1:113:57,56:57:2048:56:1960:-142.657,0,-150.575	0/0:150:150,0:150:5376:0:0:0,-45.1545,-483.971	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/1:120:60,60:60:2152:60:2124:-155.303,0,-157.824	0/0:112:111,0:111:3964:0:0:0,-33.4143,-355.816	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/1:116:52,64:52:1844:64:2274:-170.002,0,-131.321	0/0:101:101,0:101:3607:0:0:0,-30.404,-324.836	0/0:164:163,1:163:5823:1:36:0,-45.7706,-520.585	0/0:173:172,1:172:6141:1:36:0,-48.4799,-549.191	0/0:117:117,0:117:4164:0:0:0,-35.2205,-374.943	0/0:138:138,0:138:4931:0:0:0,-41.5421,-443.941	0/1:105:42,63:42:1504:63:2215:-168.004,0,-104.046	0/1:127:69,57:69:2441:57:2044:-145.942,0,-181.655	0/0:142:142,0:142:5092:0:0:0,-42.7463,-457.486	0/1:110:55,55:55:1958:55:1925:-140.409,0,-143.381	0/0:178:178,0:178:6368:0:0:0,-53.5833,-573.21	0/0:144:144,0:144:5154:0:0:0,-43.3483,-464	0/1:38:11,27:11:396:27:955:-74.8257,0,-24.5436	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.189	0/1:129:77,52:77:2760:52:1845:-127.495,0,-209.809	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.545	0/1:173:71,102:71:2531:102:3638:-275.546,0,-175.963	0/0:182:182,0:182:6485:0:0:0,-54.7875,-583.737	0/1:60:26,34:26:927:34:1183:-88.7093,0,-65.6856	0/0:198:198,0:198:7092:0:0:0,-59.6039,-638.339	0/0:81:76,5:76:2723:5:165:0,-9.20983,-230.139	0/0:163:162,1:162:5765:1:36:0,-45.4696,-515.367	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	.:.:.:.:.:.:.:.	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:301:301,0:301:10723:0:0:0,-90.61,-964.979	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:143:72,71:72:2580:71:2469:-179.412,0,-189.402	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:106:70,36:70:2504:36:1296:-85.0348,0,-193.703	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/1:110:55,55:55:1963:55:1951:-142.752,0,-143.831	0/1:123:45,77:45:1603:77:2725:-208.406,0,-107.474	0/0:121:121,0:121:4297:0:0:0,-36.4246,-386.82	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/0:122:122,0:122:4355:0:0:0,-36.7257,-392.125	0/0:106:106,0:106:3770:0:0:0,-31.9092,-339.5	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:125:125,0:125:4467:0:0:0,-37.6287,-402.2	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:125:69,56:69:2480:56:1995:-142.195,0,-185.824	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:123:70,53:70:2503:53:1867:-131.28,0,-188.495	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/0:80:80,0:80:2871:0:0:0,-24.0824,-258.626	0/0:139:139,0:139:4951:0:0:0,-41.8432,-445.742	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/1:127:65,62:65:2315:62:2210:-160.934,0,-170.379	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/0:73:73,0:73:2612:0:0:0,-21.9752,-234.472	0/0:133:133,0:133:4768:0:0:0,-40.037,-429.277	0/1:91:34,57:34:1208:57:2027:-155.306,0,-81.6324	0/0:39:39,0:39:1364:0:0:0,-11.7402,-123.056	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/0:151:150,1:150:5325:1:36:0,-41.8573,-475.789	0/0:18:18,0:18:625:0:0:0,-5.41854,-56.5725	0/1:43:19,24:19:684:24:856:-64.4168,0,-48.946	0/1:69:43,26:43:1544:26:936:-63.7884,0,-118.482	0/0:147:147,0:147:5247:0:0:0,-44.2514,-472.368	0/0:116:116,0:116:4176:0:0:0,-34.9195,-376.02	0/1:63:35,28:35:1252:28:993:-70.7145,0,-94.0202	0/0:93:90,3:90:3212:3:108:0,-17.9206,-279.228	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:109:63,46:63:2251:46:1619:-113.183,0,-170.04	0/0:106:106,0:106:3803:0:0:0,-31.9092,-342.466	0/0:241:241,0:241:8612:0:0:0,-72.5482,-775.077	0/1:176:81,95:81:2912:95:3361:-249.724,0,-209.333	0/0:138:137,1:137:4864:1:36:0,-37.9439,-434.317	0/1:207:115,92:115:4119:92:3246:-230.049,0,-308.58	0/0:230:229,1:229:8187:1:36:0,-65.6386,-733.241	0/1:73:35,38:35:1256:38:1356:-100.365,0,-91.3701	0/0:118:118,0:118:4190:0:0:0,-35.5215,-377.284	0/0:129:129,0:129:4575:0:0:0,-38.8329,-411.917	0/1:74:31,43:31:1116:43:1523:-115.086,0,-78.4755	0/1:114:56,58:56:2012:58:2020:-147.752,0,-147.036	0/1:116:23,93:23:816:93:3328:-264.818,0,-38.8422	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:158:158,0:158:5630:0:0:0,-47.5627,-506.823
chr03	25690420	.	C	G	34634.8	PASS	AB=0.49274;ABP=4.93366;AC=37;AF=0.196809;AN=188;AO=2086;CIGAR=1X;DP=12246;DPB=12246;DPRA=0.874918;EPP=4532.7;EPPR=22047.8;GTI=1;LEN=1;MEANALT=1.08696;MQM=59.8859;MQMR=59.9836;NS=94;NUMALT=1;ODDS=3.1999;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74536;QR=362641;RO=10152;RPL=0;RPP=4532.7;RPPR=22047.8;RPR=2086;RUN=1;SAF=2086;SAP=4532.7;SAR=0;SRF=10152;SRP=22047.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:116:71,45:71:2532:45:1604:-109.726,0,-193.212	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.355	0/1:244:122,122:122:4332:122:4357:-318.848,0,-316.604	0/0:379:379,0:379:13536:0:0:0,-114.09,-1218.03	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.082	0/1:119:46,73:46:1644:73:2578:-196.443,0,-112.426	0/0:302:302,0:302:10772:0:0:0,-90.9111,-969.363	0/0:133:133,0:133:4756:0:0:0,-40.037,-428.198	0/1:100:43,57:43:1532:57:2048:-154.46,0,-108.07	0/0:108:108,0:108:3879:0:0:0,-32.5112,-349.303	0/0:107:107,0:107:3801:0:0:0,-32.2102,-342.289	0/0:103:102,0:102:3659:0:0:0,-30.7051,-329.153	0/0:84:84,0:84:3000:0:0:0,-25.2865,-270.232	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.827	0/1:65:38,27:38:1359:27:956:-66.7874,0,-103.043	0/1:40:22,18:22:792:18:644:-46.2469,0,-59.5645	0/0:49:48,1:48:1703:1:36:0,-11.1522,-149.957	0/1:34:18,16:18:640:16:568:-41.2168,0,-47.6943	0/0:140:139,1:139:4972:1:36:0,-38.5459,-443.945	0/0:216:216,0:216:7712:0:0:0,-65.0225,-694.116	0/1:122:42,80:42:1496:80:2848:-219.827,0,-98.2089	0/0:178:178,0:178:6364:0:0:0,-53.5833,-572.851	0/1:53:29,24:29:1032:24:849:-60.7732,0,-77.2389	0/0:94:94,0:94:3360:0:0:0,-28.2968,-302.127	0/1:364:186,178:186:6648:178:6366:-463.454,0,-488.825	0/0:231:229,0:229:8200:0:0:0,-68.9359,-737.653	0/1:30:17,13:17:612:13:464:-33.0666,0,-46.3825	0/0:389:389,0:389:13908:0:0:0,-117.101,-1251.5	0/0:208:203,4:203:7276:4:144:0,-49.3594,-641.577	0/0:204:201,3:201:7140:3:108:0,-51.3349,-632.59	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:40:34,6:34:1220:6:216:-7.74931,0,-98.0656	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:194:194,0:194:6938:0:0:0,-58.3998,-624.486	0/0:219:219,0:219:7807:0:0:0,-65.9256,-702.664	0/1:83:39,44:39:1404:44:1568:-116.354,0,-101.674	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:222:131,91:131:4676:91:3229:-223.983,0,-354.174	0/0:53:53,0:53:1899:0:0:0,-15.9546,-171.187	0/1:323:156,166:156:5568:166:5933:-436.781,0,-403.954	0/1:62:27,35:27:968:35:1252:-94.3212,0,-68.7735	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:138:138,0:138:4924:0:0:0,-41.5421,-443.313	0/0:124:124,0:124:4444:0:0:0,-37.3277,-400.129	0/0:271:271,0:271:9672:0:0:0,-81.5791,-870.436	0/0:127:127,0:127:4532:0:0:0,-38.2308,-408.049	0/0:193:193,0:193:6904:0:0:0,-58.0988,-621.428	0/0:97:97,0:97:3464:0:0:0,-29.1999,-311.973	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:156:82,74:82:2928:74:2652:-191.965,0,-216.795	0/0:152:152,0:152:5448:0:0:0,-45.7566,-490.448	0/1:25:3,22:3:108:22:792:-64.0799,0,-2.54942	0/1:149:82,67:82:2928:67:2404:-171.762,0,-218.902	0/0:80:79,0:79:2804:0:0:0,-23.7814,-252.242	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:19:9,10:9:320:10:360:-27.0247,0,-23.4228	0/0:165:165,0:165:5876:0:0:0,-49.6699,-528.955	0/0:90:89,1:89:3174:1:36:0,-23.4944,-282.286	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:226:226,0:226:8080:0:0:0,-68.0328,-727.22	0/1:276:147,129:147:5240:129:4605:-331.403,0,-388.656	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.286	0/0:119:119,0:119:4252:0:0:0,-35.8226,-382.86	0/0:262:260,2:260:9292:2:66:0,-72.6137,-829.98	0/1:224:86,138:86:3084:138:4944:-377.675,0,-210.357	0/0:51:50,1:50:1788:1:36:0,-11.7543,-157.604	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/0:59:59,0:59:2087:0:0:0,-17.7608,-188.1	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:203:97,106:97:3475:106:3789:-280.092,0,-251.851	0/1:106:60,46:60:2156:46:1648:-116.69,0,-162.398	0/0:316:316,0:316:11268:0:0:0,-95.1255,-1012.99	0/0:255:255,0:255:9108:0:0:0,-76.7626,-819.698	0/1:243:138,105:138:4944:105:3752:-264.723,0,-371.959	0/0:184:183,1:183:6572:1:36:0,-51.7912,-587.96	0/1:17:9,8:9:324:8:284:-20.784,0,-24.3883	0/1:176:113,63:113:4048:63:2256:-150.322,0,-311.526	0/0:128:128,0:128:4576:0:0:0,-38.5318,-412.006	0/0:196:193,2:193:6880:2:72:0,-52.224,-612.436	0/1:60:31,28:31:1092:28:1004:-72.5553,0,-80.4692	0/0:93:93,0:93:3319:0:0:0,-27.9958,-298.928	0/1:55:16,39:16:576:39:1396:-109.382,0,-35.6183	0/0:141:141,0:141:5047:0:0:0,-42.4452,-453.748	0/1:25:16,9:16:567:9:320:-21.6166,0,-43.835	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.92	0/0:97:97,0:97:3463:0:0:0,-29.1999,-311.882	0/1:113:55,58:55:1956:58:2072:-152.734,0,-142.299	0/1:231:124,107:124:4414:107:3840:-276.257,0,-327.896	0/1:66:20,46:20:720:46:1648:-128.741,0,-45.2608	0/0:211:211,0:211:7528:0:0:0,-63.5173,-677.565	0/0:111:111,0:111:3959:0:0:0,-33.4143,-356.502
chr03	25690426	.	C	T	34194.6	PASS	AB=0.490304;ABP=6.42113;AC=37;AF=0.196809;AN=188;AO=2068;CIGAR=1X;DP=12241;DPB=12241;DPRA=0.82175;EPP=4493.62;EPPR=22082.5;GTI=2;LEN=1;MEANALT=1;MQM=59.8472;MQMR=59.9826;NS=94;NUMALT=1;ODDS=1.59447;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73916;QR=363347;RO=10168;RPL=0;RPP=4493.62;RPPR=22082.5;RPR=2068;RUN=1;SAF=2068;SAP=4493.62;SAR=0;SRF=10168;SRP=22082.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:116:71,45:71:2535:45:1601:-109.454,0,-193.481	0/0:89:89,0:89:3171:0:0:0,-26.7917,-285.586	0/1:241:122,119:122:4376:119:4224:-307.789,0,-321.463	0/0:382:382,0:382:13628:0:0:0,-114.993,-1226.31	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/1:116:45,71:45:1612:71:2552:-195.009,0,-110.45	0/0:310:309,0:309:11033:0:0:0,-93.0183,-992.46	0/0:133:133,0:133:4772:0:0:0,-40.037,-429.636	0/1:97:42,55:42:1496:55:1963:-147.733,0,-105.735	0/0:108:108,0:108:3845:0:0:0,-32.5112,-346.246	0/0:105:105,0:105:3733:0:0:0,-31.6081,-336.171	0/0:102:102,0:102:3647:0:0:0,-30.7051,-328.434	0/0:83:83,0:83:2953:0:0:0,-24.9855,-266.003	0/0:90:89,1:89:3184:1:36:0,-23.4944,-283.186	0/1:67:39,28:39:1392:28:1000:-70.143,0,-105.41	0/1:41:23,18:23:824:18:644:-45.9459,0,-62.1411	0/0:51:50,1:50:1788:1:36:0,-11.7543,-157.604	0/1:35:19,16:19:676:16:576:-41.6389,0,-50.6319	0/0:142:141,1:141:5044:1:36:0,-39.148,-450.471	0/0:217:217,0:217:7776:0:0:0,-65.3235,-699.87	0/1:122:43,79:43:1536:79:2836:-218.745,0,-101.807	0/0:181:181,0:181:6478:0:0:0,-54.4864,-583.104	0/1:52:30,22:30:1051:22:792:-55.9521,0,-79.2461	0/0:92:92,0:92:3279:0:0:0,-27.6948,-294.84	0/1:358:185,173:185:6624:173:6209:-451.136,0,-488.47	0/0:229:229,0:229:8178:0:0:0,-68.9359,-736.035	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.0815	0/0:382:382,0:382:13675:0:0:0,-114.993,-1230.53	0/0:210:205,5:205:7301:5:180:0,-46.6642,-640.592	0/0:206:204,2:204:7270:2:72:0,-55.1755,-647.519	0/1:13:5,8:5:180:8:280:-21.6259,0,-12.6387	0/1:40:34,6:34:1208:6:216:-7.74931,0,-96.9849	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:41:40,1:40:1436:1:36:0,-8.74395,-125.939	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:194:194,0:194:6941:0:0:0,-58.3998,-624.754	0/0:215:215,0:215:7681:0:0:0,-64.7214,-691.325	0/1:83:40,43:40:1436:43:1544:-114.185,0,-104.552	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:218:130,88:130:4648:88:3122:-215.297,0,-352.858	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.108	0/1:324:156,168:156:5592:168:5968:-439.692,0,-405.868	0/1:62:26,36:26:936:36:1288:-97.5597,0,-65.8956	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:137:136,0:136:4864:0:0:0,-40.9401,-437.554	0/0:128:127,0:127:4539:0:0:0,-38.2308,-408.315	0/0:272:272,0:272:9756:0:0:0,-81.8802,-877.985	0/0:127:127,0:127:4544:0:0:0,-38.2308,-409.127	0/0:191:190,0:190:6816:0:0:0,-57.1957,-613.149	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:157:82,75:82:2907:75:2696:-195.621,0,-214.605	0/0:153:153,0:153:5472:0:0:0,-46.0576,-492.608	0/1:26:3,23:3:108:23:828:-67.0173,0,-2.24839	0/1:150:82,68:82:2936:68:2431:-173.891,0,-219.32	0/0:77:76,1:76:2703:1:36:0,-19.581,-239.916	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:20:9,11:9:320:11:383:-28.7826,0,-23.1218	0/0:166:166,0:166:5911:0:0:0,-49.971,-532.103	0/0:92:91,1:91:3259:1:36:0,-24.0965,-289.932	0/1:14:10,4:10:360:4:125:-7.3442,0,-28.5299	0/0:223:223,0:223:7983:0:0:0,-67.1297,-718.491	0/1:276:145,131:145:5187:131:4682:-338.348,0,-383.885	0/0:101:100,0:100:3588:0:0:0,-30.103,-322.766	0/0:123:123,0:123:4407:0:0:0,-37.0267,-396.801	0/0:264:262,2:262:9345:2:72:0,-72.6651,-834.197	0/1:218:87,131:87:3104:131:4677:-355.463,0,-213.964	0/0:51:50,1:50:1792:1:36:0,-11.7543,-157.964	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:58:58,0:58:2037:0:0:0,-17.4597,-183.601	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:202:96,106:96:3418:106:3768:-278.435,0,-247.025	0/1:107:60,47:60:2148:47:1680:-119.268,0,-161.377	0/0:317:317,0:317:11300:0:0:0,-95.4265,-1015.87	0/0:254:254,0:254:9079:0:0:0,-76.4616,-817.087	0/1:242:138,104:138:4944:104:3724:-261.567,0,-372.26	0/0:185:184,1:184:6576:1:36:0,-52.0923,-588.324	0/1:17:9,8:9:324:8:288:-21.1481,0,-24.3883	0/1:175:112,63:112:4007:63:2264:-151.342,0,-308.139	0/0:131:130,1:130:4632:1:36:0,-35.8367,-413.447	0/0:194:192,2:192:6851:2:72:0,-51.5631,-609.825	0/1:59:32,27:32:1134:27:972:-70.0371,0,-84.6065	0/0:91:91,0:91:3263:0:0:0,-27.3937,-293.889	0/1:54:16,38:16:576:38:1364:-106.805,0,-35.9194	0/0:140:140,0:140:4998:0:0:0,-42.1442,-449.341	0/1:23:14,9:14:491:9:324:-22.5822,0,-37.5974	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.242	0/1:112:56,56:56:2008:56:2003:-146.827,0,-147.278	0/1:231:125,106:125:4442:106:3808:-273.378,0,-330.415	0/1:67:21,46:21:731:46:1648:-128.44,0,-45.9414	0/0:215:215,0:215:7691:0:0:0,-64.7214,-692.224	0/0:113:113,0:113:4035:0:0:0,-34.0164,-363.338
chr03	25779990	.	CAG	AAA,CAA	161983	PASS	AB=0.499113,0.499468;ABP=3.02956,3.01723;AC=148,40;AF=0.787234,0.212766;AN=188;AO=6038,1423;CIGAR=1X1M1X,2M1X;DP=7474;DPB=7474.67;DPRA=26.7778,0.96271;EPP=13001.7,3058.37;EPPR=0;GTI=2;LEN=3,1;MEANALT=1.62366,2.10638;MQM=56.7377,59.4329;MQMR=0;NS=94;NUMALT=2;ODDS=0.885238;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=18,18;PQR=0;PRO=0;QA=212667,50703;QR=0;RO=0;RPL=28,7;RPP=12872.3,3032.51;RPPR=0;RPR=6010,1416;RUN=1,1;SAF=15,3;SAP=12984.4,3067.01;SAR=6023,1420;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:90:0,54,36:0:0:54,36:1894,1287:-258.914,-105.152,-88.8967,-154.116,0,-143.278	1/1:66:0,66,0:0:0:66,0:2314,0:-208.033,-19.868,0,-208.033,-19.868,-208.033	1/2:148:0,67,81:0:0:67,81:2326,2891:-424.688,-235.897,-215.728,-189.142,0,-164.759	1/1:212:0,211,1:0:0:211,1:7455,36:-669.82,-63.5173,0,-666.882,-60.2201,-666.581	1/1:64:0,64,0:0:0:64,0:2278,0:-205.046,-19.2659,0,-205.046,-19.2659,-205.046	1/1:69:0,69,0:0:0:69,0:2425,0:-218.176,-20.7711,0,-218.176,-20.7711,-218.176	1/2:107:0,60,47:0:0:60,47:2115,1673:-308.689,-136.661,-118.599,-172.383,0,-158.234	1/1:121:0,121,0:0:0:121,0:4228,0:-379.509,-36.4246,0,-379.509,-36.4246,-379.509	1/1:95:0,95,0:0:0:95,0:3319,0:-298.64,-28.5979,0,-298.64,-28.5979,-298.64	1/2:67:0,30,37:0:0:30,37:1042,1319:-192.356,-107.855,-98.8238,-84.8524,0,-73.7143	1/1:26:0,26,0:0:0:26,0:901,0:-81.3019,-7.82678,0,-81.3019,-7.82678,-81.3019	1/1:81:0,81,0:0:0:81,0:2783,0:-250.258,-24.3834,0,-250.258,-24.3834,-250.258	1/1:63:0,63,0:0:0:63,0:2198,0:-197.163,-18.9649,0,-197.163,-18.9649,-197.163	1/1:36:0,36,0:0:0:36,0:1280,0:-115.25,-10.8371,0,-115.25,-10.8371,-115.25	1/1:55:0,55,0:0:0:55,0:1951,0:-175.8,-16.5567,0,-175.8,-16.5567,-175.8	1/2:27:0,15,12:0:0:15,12:527,432:-78.4774,-35.6088,-31.0934,-43.2245,0,-39.6121	1/2:12:0,6,6:0:0:6,6:214,216:-35.287,-17.9456,-16.1394,-17.6982,0,-15.892	1/1:32:0,32,0:0:0:32,0:1139,0:-102.375,-9.63296,0,-102.375,-9.63296,-102.375	1/2:29:0,20,9:0:0:20,9:700,324:-83.6796,-26.7966,-20.776,-57.2396,0,-54.5304	1/1:113:0,113,0:0:0:113,0:4015,0:-361.314,-34.0164,0,-361.314,-34.0164,-361.314	1/1:75:0,74,0:0:0:74,0:2593,0:-232.972,-22.2762,0,-232.972,-22.2762,-232.972	1/2:51:0,15,36:0:0:15,36:531,1283:-148.126,-104.874,-100.358,-43.5509,0,-32.7138	1/1:99:0,99,0:0:0:99,0:3500,0:-314.664,-29.802,0,-314.664,-29.802,-314.664	1/2:77:0,62,15:0:0:62,15:2200,536:-223.064,-44.0594,-25.3955,-179.361,0,-174.845	1/1:73:0,72,0:0:0:72,0:2507,0:-225.073,-21.6742,0,-225.073,-21.6742,-225.073	1/2:222:0,90,132:0:0:90,132:3175,4711:-641.048,-383.197,-356.105,-258.204,0,-218.468	1/1:201:0,201,0:0:0:201,0:7077,0:-635.844,-60.507,0,-635.844,-60.507,-635.844	1/2:20:0,3,17:0:0:3,17:108,612:-59.0729,-50.2652,-49.3621,-9.16729,0,-4.04978	1/1:146:0,146,0:0:0:146,0:5146,0:-463.071,-43.9504,0,-463.071,-43.9504,-463.071	1/1:153:0,146,5:0:0:146,5:5169,180:-464.74,-43.9504,0,-450.052,-29.1698,-448.547	1/1:110:0,110,0:0:0:110,0:3876,0:-348.61,-33.1133,0,-348.61,-33.1133,-348.61	1/2:4:0,1,3:0:0:1,3:36,108:-12.097,-9.16107,-8.86004,-3.29553,0,-2.39244	1/2:19:0,4,15:0:0:4,15:136,531:-54.0474,-43.5839,-42.3798,-10.7939,0,-6.2785	1/2:6:0,3,3:0:0:3,3:108,108:-17.9775,-9.17208,-8.26899,-9.16516,0,-8.26207	1/1:7:0,7,0:0:0:7,0:250,0:-22.8242,-2.10721,0,-22.8242,-2.10721,-22.8242	1/1:8:0,8,0:0:0:8,0:286,0:-26.0597,-2.40824,0,-26.0597,-2.40824,-26.0597	1/1:140:0,140,0:0:0:140,0:4961,0:-446.627,-42.1442,0,-446.627,-42.1442,-446.627	1/1:96:0,96,0:0:0:96,0:3365,0:-302.244,-28.8989,0,-302.244,-28.8989,-302.244	1/2:26:0,12,14:0:0:12,14:421,495:-74.8794,-40.6509,-37.0386,-34.5802,0,-30.3658	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/2:188:0,119,68:0:0:119,68:4217,2440:-542.039,-199.112,-163.289,-343.032,0,-322.562	1/1:26:0,26,0:0:0:26,0:917,0:-82.8039,-7.82678,0,-82.8039,-7.82678,-82.8039	1/2:135:0,49,86:0:0:49,86:1706,3088:-390.47,-251.985,-237.234,-138.836,0,-112.948	1/2:34:0,21,13:0:0:21,13:747,455:-98.1977,-37.3686,-31.0469,-61.181,0,-57.2676	1/1:23:0,23,0:0:0:23,0:813,0:-73.4468,-6.92369,0,-73.4468,-6.92369,-73.4468	1/1:171:0,171,0:0:0:171,0:6019,0:-541.04,-51.4761,0,-541.04,-51.4761,-541.04	1/1:155:0,154,0:0:0:154,0:5462,0:-489.496,-46.3586,0,-489.496,-46.3586,-489.496	1/1:145:0,143,0:0:0:143,0:5061,0:-454.953,-43.0473,0,-454.953,-43.0473,-454.953	1/1:88:0,88,0:0:0:88,0:3119,0:-280.835,-26.4906,0,-280.835,-26.4906,-280.835	1/1:54:0,53,1:0:0:53,1:1862,36:-167.338,-15.9546,0,-164.401,-12.6573,-164.1	1/1:134:0,133,1:0:0:133,1:4675,36:-420.523,-40.037,0,-417.585,-36.7397,-417.284	1/1:5:0,5,0:0:0:5,0:178,0:-15.7273,-1.50515,0,-15.7273,-1.50515,-15.7273	1/2:321:0,178,143:0:0:178,143:6260,5083:-922.048,-414.46,-360.876,-507.941,0,-464.894	1/1:41:0,41,0:0:0:41,0:1466,0:-131.338,-12.3422,0,-131.338,-12.3422,-131.338	1/2:16:0,3,13:0:0:3,13:108,464:-46.9821,-38.1793,-37.2762,-9.1617,0,-5.24831	1/2:124:0,64,60:0:0:64,60:2239,2132:-355.7,-173.997,-154.731,-182.055,0,-163.993	1/1:78:0,77,1:0:0:77,1:2706,36:-242.538,-23.1793,0,-239.6,-19.8821,-239.299	1/2:9:0,7,2:0:0:7,2:25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chr03	25816610	.	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chr03	25819966	.	C	T	20251.5	PASS	AB=0.393635;ABP=61.6764;AC=137;AF=0.728723;AN=188;AO=1062;CIGAR=1X;DP=1986;DPB=1986;DPRA=0.346795;EPP=2291.77;EPPR=2007.28;GTI=11;LEN=1;MEANALT=1.01149;MQM=46.774;MQMR=56.9393;NS=94;NUMALT=1;ODDS=0.0978711;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37861;QR=31694;RO=923;RPL=1061;RPP=2300.44;RPPR=2007.28;RPR=1;RUN=1;SAF=1061;SAP=2300.44;SAR=1;SRF=923;SRP=2007.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:21:8,13:8:284:13:468:-36.138,0,-19.5817	1/1:31:0,31:0:0:31:1112:-93.4524,-9.33193,0	1/1:12:0,12:0:0:12:428:-38.8557,-3.61236,0	1/1:7:0,7:0:0:7:252:-23.028,-2.10721,0	0/1:15:8,7:8:279:7:252:-17.128,0,-20.8554	1/1:15:0,15:0:0:15:532:-48.2113,-4.51545,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:12:9,3:9:311:3:104:-5.50913,0,-24.6186	1/1:27:0,27:0:0:27:968:-81.634,-8.12781,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:13:0,13:0:0:13:451:-40.9167,-3.91339,0	1/1:12:0,12:0:0:12:432:-36.473,-3.61236,0	0/1:16:8,8:8:264:8:276:-20.3588,0,-19.2638	0/1:11:9,2:9:311:2:72:-3.52539,0,-25.0124	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:18:14,4:14:463:4:140:-7.52604,0,-36.5664	1/1:27:0,27:0:0:27:972:-81.646,-8.12781,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:16:11,5:11:381:5:171:-9.94333,0,-29.7576	1/1:3:0,3:0:0:3:108:-9.36921,-0.90309,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:16:0,16:0:0:16:572:-51.7419,-4.81648,0	0/1:37:21,16:21:740:16:576:-37.381,0,-55.6969	1/1:31:0,31:0:0:31:1112:-100.387,-9.33193,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:39:0,39:0:0:39:1388:-116.826,-11.7402,0	1/1:16:0,16:0:0:16:572:-51.5828,-4.81648,0	1/1:11:0,11:0:0:11:396:-33.6883,-3.31133,0	0/0:86:86,0:86:2988:0:0:0,-25.8886,-269.153	0/0:73:73,0:73:2518:0:0:0,-21.9752,-226.855	0/0:52:52,0:52:1803:0:0:0,-15.6536,-162.504	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	1/1:29:0,29:0:0:29:1031:-86.8082,-8.72987,0	1/1:24:0,24:0:0:24:852:-76.9998,-7.22472,0	0/1:32:26,6:26:879:6:216:-10.1576,0,-69.762	0/0:33:33,0:33:1110:0:0:0,-9.93399,-100.199	0/1:16:6,10:6:198:10:356:-27.5648,0,-13.3268	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:24:8,16:8:284:16:576:-44.9487,0,-18.6786	0/1:9:5,4:5:176:4:144:-9.67147,0,-13.428	1/1:8:0,8:0:0:8:280:-23.9425,-2.40824,0	1/1:17:0,17:0:0:17:612:-51.9415,-5.11751,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:25:0,25:0:0:25:888:-74.9031,-7.52575,0	1/1:31:0,31:0:0:31:1091:-92.5204,-9.33193,0	1/1:15:0,15:0:0:15:540:-45.5076,-4.51545,0	1/1:21:0,21:0:0:21:743:-63.6235,-6.32163,0	1/1:1:0,1:0:0:1:36:-3.34615,-0.30103,0	0/1:30:19,11:19:646:11:392:-26.5892,0,-49.4269	1/1:14:0,14:0:0:14:487:-41.5519,-4.21442,0	0/0:33:33,0:33:1157:0:0:0,-9.93399,-104.412	0/1:9:7,2:7:230:2:72:-4.12745,0,-18.312	1/1:11:0,11:0:0:11:392:-33.5572,-3.31133,0	0/0:82:77,5:77:2599:5:180:0,-9.29219,-218.052	0/0:93:89,4:89:3016:4:144:0,-15.3818,-258.424	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:26:10,16:10:336:16:572:-40.4518,0,-22.0672	0/0:43:43,0:43:1494:0:0:0,-12.9443,-134.194	1/1:25:1,24:1:32:24:864:-69.4141,-4.32848,0	0/1:31:15,16:15:523:16:576:-39.1872,0,-37.9283	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:19:0,19:0:0:19:684:-57.5537,-5.71957,0	1/1:24:0,24:0:0:24:843:-70.7951,-7.22472,0	0/1:43:31,12:31:1090:12:428:-23.2876,0,-84.809	0/1:7:1,6:1:27:6:216:-17.6833,0,-0.592573	1/1:7:0,7:0:0:7:252:-22.9583,-2.10721,0	1/1:20:0,20:0:0:20:720:-60.7925,-6.0206,0	1/1:3:0,3:0:0:3:108:-9.36921,-0.90309,0	0/1:25:19,6:19:642:6:216:-12.2648,0,-50.5708	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	1/1:15:0,15:0:0:15:532:-48.2115,-4.51545,0	1/1:21:0,21:0:0:21:752:-63.3366,-6.32163,0	0/1:16:6,10:6:216:10:351:-27.1102,0,-14.974	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	0/0:54:54,0:54:1870:0:0:0,-16.2556,-168.575	0/1:15:11,4:11:388:4:144:-8.79817,0,-30.6854	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:24:0,24:0:0:24:856:-72.585,-7.22472,0	0/1:24:11,13:11:384:13:460:-32.0045,0,-27.3832	1/1:6:0,6:0:0:6:216:-18.4038,-1.80618,0	0/1:10:5,5:5:167:5:180:-12.6139,0,-12.3098	1/1:22:0,22:0:0:22:770:-65.1046,-6.62266,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:13:0,13:0:0:13:449:-40.7375,-3.91339,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	0/0:23:21,2:21:700:2:72:0,-0.0869673,-56.4682	0/1:83:73,9:73:2480:9:324:-4.46157,0,-198.386	0/1:10:5,5:5:176:5:176:-12.1378,0,-13.127	1/1:14:0,14:0:0:14:500:-42.2553,-4.21442,0	1/1:14:0,14:0:0:14:500:-42.2553,-4.21442,0
chr03	25822001	.	C	T	10673.8	PASS	AB=0.46384;ABP=21.2268;AC=38;AF=0.202128;AN=188;AO=751;CIGAR=1X;DP=4905;DPB=4905;DPRA=0.776689;EPP=1633.79;EPPR=8636.68;GTI=4;LEN=1;MEANALT=1;MQM=42.0826;MQMR=31.3284;NS=94;NUMALT=1;ODDS=0.817298;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26298;QR=148109;RO=4154;RPL=0;RPP=1633.79;RPPR=8636.68;RPR=751;RUN=1;SAF=0;SAP=1633.79;SAR=751;SRF=0;SRP=9023.31;SRR=4154;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:19,20:19:676:20:695:-47.2588,0,-35.1749	0/0:33:33,0:33:1184:0:0:0,-9.93399,-82.2437	0/1:130:90,40:90:3216:40:1414:-82.0316,0,-182.989	0/0:134:134,0:134:4789:0:0:0,-40.338,-362.664	0/0:39:39,0:39:1383:0:0:0,-11.7402,-101.881	0/0:20:20,0:20:701:0:0:0,-6.0206,-48.3888	0/1:47:17,30:17:608:30:1063:-79.4609,0,-32.5123	0/0:51:51,0:51:1819:0:0:0,-15.3525,-124.747	0/0:31:31,0:31:1112:0:0:0,-9.33193,-76.8716	0/1:39:20,19:20:698:19:672:-47.8513,0,-42.7663	0/0:21:21,0:21:743:0:0:0,-6.32163,-57.467	0/0:78:78,0:78:2760:0:0:0,-23.4803,-192.554	0/0:50:50,0:50:1770:0:0:0,-15.0515,-124.215	0/0:34:34,0:34:1220:0:0:0,-10.235,-89.4886	0/0:44:44,0:44:1567:0:0:0,-13.2453,-118.498	0/1:40:33,7:33:1180:7:248:-10.0615,0,-74.2798	0/1:23:15,8:15:536:8:284:-17.9426,0,-30.2147	0/0:13:13,0:13:449:0:0:0,-3.91339,-32.3424	0/1:13:11,2:11:396:2:72:-2.67504,0,-23.4486	0/0:80:80,0:80:2867:0:0:0,-24.0824,-217.117	0/0:94:94,0:94:3340:0:0:0,-28.2968,-244.411	0/1:103:50,53:50:1792:53:1866:-135.515,0,-109.816	0/0:77:77,0:77:2751:0:0:0,-23.1793,-209.834	0/1:35:13,22:13:464:22:767:-57.0973,0,-24.8748	0/0:67:67,0:67:2380:0:0:0,-20.169,-174.705	0/1:108:61,47:61:2179:47:1667:-116.002,0,-135.505	0/0:149:149,0:149:5306:0:0:0,-44.8535,-387.9	0/1:17:7,10:7:252:10:356:-26.444,0,-13.4602	0/0:173:173,0:173:6175:0:0:0,-52.0782,-480.11	0/0:50:50,0:50:1783:0:0:0,-15.0515,-131.62	0/0:52:52,0:52:1832:0:0:0,-15.6536,-141.459	0/1:4:3,1:3:108:1:36:-2.29858,0,-6.92362	0/1:16:11,5:11:392:5:176:-10.9794,0,-24.7389	0/0:6:6,0:6:216:0:0:0,-1.80618,-15.0491	0/0:3:3,0:3:104:0:0:0,-0.90309,-7.58526	0/0:11:11,0:11:392:0:0:0,-3.31133,-28.0716	0/0:110:110,0:110:3927:0:0:0,-33.1133,-307.044	0/0:74:74,0:74:2656:0:0:0,-22.2762,-194.034	0/1:20:15,5:15:532:5:176:-9.57718,0,-33.3887	1/1:1:0,1:0:0:1:36:-3.5027,-0.30103,0	0/1:64:39,25:39:1400:25:883:-56.9081,0,-83.0609	0/0:24:24,0:24:864:0:0:0,-7.22472,-62.4453	0/1:113:58,55:58:2072:55:1931:-134.116,0,-120.74	0/1:19:15,4:15:540:4:127:-5.91179,0,-34.4068	0/0:31:31,0:31:1112:0:0:0,-9.33193,-85.2496	0/0:70:70,0:70:2493:0:0:0,-21.0721,-193.174	0/0:83:83,0:83:2976:0:0:0,-24.9855,-206.641	0/0:109:109,0:109:3881:0:0:0,-32.8123,-293.919	0/0:58:58,0:58:2072:0:0:0,-17.4597,-158.651	0/0:77:77,0:77:2760:0:0:0,-23.1793,-210.252	0/0:122:122,0:122:4345:0:0:0,-36.7257,-341.559	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.0509	0/1:79:50,29:50:1780:29:1024:-64.4351,0,-99.2536	0/0:42:42,0:42:1495:0:0:0,-12.6433,-118.532	0/1:6:2,4:2:72:4:144:-10.9754,0,-3.3926	0/1:77:43,34:43:1522:34:1159:-78.1347,0,-89.1754	0/0:55:55,0:55:1950:0:0:0,-16.5566,-151.887	0/1:6:4,2:4:144:2:72:-4.99287,0,-9.75128	0/1:5:1,4:1:36:4:144:-11.6617,0,-1.61849	0/0:43:43,0:43:1544:0:0:0,-12.9443,-114.006	0/1:62:33,29:33:1171:29:964:-66.6713,0,-72.0039	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.3018	0/0:97:97,0:97:3458:0:0:0,-29.1999,-271.428	0/1:86:34,52:34:1211:52:1814:-133.451,0,-66.4305	0/0:26:26,0:26:928:0:0:0,-7.82678,-67.8565	0/0:54:54,0:54:1927:0:0:0,-16.2556,-146.063	0/0:80:79,1:79:2813:1:36:0,-21.0279,-211.928	0/1:87:43,44:43:1539:44:1523:-108.699,0,-91.8419	0/0:11:11,0:11:396:0:0:0,-3.31133,-29.0276	0/0:31:31,0:31:1104:0:0:0,-9.33193,-76.6212	0/0:32:32,0:32:1120:0:0:0,-9.63296,-87.6981	0/0:10:10,0:10:360:0:0:0,-3.0103,-27.7963	0/1:65:15,50:15:536:50:1754:-131.198,0,-17.5715	0/1:11:7,4:7:248:4:144:-9.47029,0,-14.1258	0/0:55:55,0:55:1951:0:0:0,-16.5566,-141.632	0/0:91:91,0:91:3256:0:0:0,-27.3937,-247.804	0/1:62:36,26:36:1284:26:919:-61.3969,0,-70.0419	0/0:57:52,5:52:1868:5:161:0,-3.06282,-114.936	0/1:10:7,3:7:252:3:104:-6.36515,0,-14.5014	0/1:62:29,33:29:1044:33:1184:-84.5762,0,-59.2736	0/0:58:58,0:58:2080:0:0:0,-17.4597,-143.414	0/0:135:135,0:135:4810:0:0:0,-40.639,-366.556	0/1:28:17,11:17:608:11:373:-24.6137,0,-38.1953	0/0:34:34,0:34:1211:0:0:0,-10.235,-91.5957	0/1:18:10,8:10:351:8:272:-19.0443,0,-22.1278	0/0:75:75,0:75:2661:0:0:0,-22.5772,-204.711	0/1:10:7,3:7:252:3:108:-6.73404,0,-15.2896	0/0:49:49,0:49:1731:0:0:0,-14.7505,-121.015	0/0:42:42,0:42:1504:0:0:0,-12.6433,-104.203	0/1:20:7,13:7:248:13:460:-34.7273,0,-12.4519	0/1:48:24,24:24:839:24:839:-58.3745,0,-47.6616	0/1:32:14,18:14:492:18:631:-45.2418,0,-27.7704	0/0:90:90,0:90:3211:0:0:0,-27.0927,-242.733	0/0:56:56,0:56:2008:0:0:0,-16.8577,-153.658
chr03	25822017	.	T	A	69783	PASS	AB=0.524338;ABP=11.3604;AC=150;AF=0.797872;AN=188;AO=4132;CIGAR=1X;DP=4916;DPB=4916;DPRA=52.8495;EPP=8394.61;EPPR=1619.49;GTI=3;LEN=1;MEANALT=1.04301;MQM=31.008;MQMR=41.9462;NS=94;NUMALT=1;ODDS=1.22278;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147960;QR=27836;RO=780;RPL=68;RPP=8394.61;RPPR=1619.49;RPR=4064;RUN=1;SAF=0;SAP=8975.53;SAR=4132;SRF=0;SRP=1696.76;SRR=780;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:21,19:21:733:19:680:-34.9477,0,-49.9284	1/1:33:0,33:0:0:33:1184:-81.4652,-9.93399,0	0/1:132:40,92:40:1432:92:3308:-187.966,0,-82.3374	1/1:133:0,133:0:0:133:4761:-360.196,-40.037,0	1/1:39:0,39:0:0:39:1400:-101.803,-11.7402,0	1/1:20:0,20:0:0:20:720:-48.8688,-6.0206,0	0/1:48:31,17:31:1100:17:608:-32.3121,0,-82.4281	1/1:53:0,53:0:0:53:1908:-129.738,-15.9546,0	1/1:30:0,30:0:0:30:1072:-73.8434,-9.0309,0	0/1:37:19,18:19:676:18:636:-38.4827,0,-48.7817	1/1:22:0,22:0:0:22:788:-60.6447,-6.62266,0	1/1:79:0,79:0:0:79:2840:-196.213,-23.7814,0	1/1:49:0,49:0:0:49:1752:-121.497,-14.7505,0	1/1:33:0,33:0:0:33:1180:-86.7723,-9.93399,0	1/1:44:1,43:1:36:43:1544:-112.78,-9.7092,0	0/1:41:8,33:8:288:33:1175:-73.8211,0,-13.2275	0/1:25:11,14:11:392:14:504:-27.224,0,-26.6689	1/1:14:0,14:0:0:14:504:-35.5272,-4.21442,0	0/1:13:2,11:2:72:11:396:-23.4486,0,-2.67504	1/1:82:0,82:0:0:82:2925:-222.253,-24.6845,0	1/1:95:0,95:0:0:95:3395:-247.571,-28.5979,0	0/1:102:52,50:52:1856:50:1796:-109.807,0,-134.43	1/1:80:0,80:0:0:80:2876:-218.788,-24.0824,0	0/1:35:23,12:23:820:12:428:-21.6313,0,-61.6338	1/1:62:0,62:0:0:62:2215:-161.882,-18.6639,0	0/1:111:49,62:49:1722:62:2232:-138.696,0,-119.949	1/1:154:0,153:0:0:153:5472:-398.019,-46.0576,0	0/1:17:10,7:10:356:7:252:-13.4602,0,-26.444	1/1:175:0,174:0:0:174:6207:-482.159,-52.3792,0	1/1:47:0,47:0:0:47:1684:-123.497,-14.1484,0	1/1:51:0,51:0:0:51:1832:-140.448,-15.3525,0	0/1:4:1,3:1:36:3:108:-6.92362,0,-2.29858	0/1:16:5,11:5:180:11:392:-24.4808,0,-11.2959	1/1:6:0,6:0:0:6:216:-15.0491,-1.80618,0	1/1:3:0,3:0:0:3:108:-7.66137,-0.90309,0	1/1:11:0,11:0:0:11:396:-28.1457,-3.31133,0	1/1:108:0,108:0:0:108:3875:-301.279,-32.5112,0	1/1:73:0,73:0:0:73:2628:-191.629,-21.9752,0	0/1:17:5,12:5:180:12:428:-25.4161,0,-10.7731	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.5027	0/1:65:26,39:26:932:39:1400:-82.7599,0,-60.8087	1/1:25:0,25:0:0:25:881:-64.1573,-7.52575,0	0/1:118:61,57:61:2184:57:2048:-116.563,0,-153.03	0/1:20:4,16:4:140:16:576:-36.8555,0,-6.72758	1/1:32:0,31:0:0:31:1101:-84.5467,-9.33193,0	1/1:70:0,70:0:0:70:2482:-191.401,-21.0721,0	1/1:83:0,83:0:0:83:2971:-205.654,-24.9855,0	1/1:105:0,105:0:0:105:3719:-280.829,-31.6082,0	1/1:56:0,56:0:0:56:2007:-152.796,-16.8577,0	1/1:77:0,77:0:0:77:2756:-210.357,-23.1793,0	1/1:120:0,120:0:0:120:4308:-336.859,-36.1236,0	1/1:5:0,5:0:0:5:180:-14.0509,-1.50515,0	0/1:81:31,50:31:1097:50:1800:-99.0193,0,-69.7945	1/1:39:0,39:0:0:39:1391:-109.322,-11.7402,0	0/1:7:5,2:5:180:2:72:-3.09157,0,-13.7834	0/1:77:35,42:35:1256:42:1485:-86.261,0,-86.0482	1/1:52:0,52:0:0:52:1868:-143.682,-15.6536,0	0/1:6:2,4:2:72:4:144:-9.75128,0,-4.99287	0/1:5:4,1:4:144:1:36:-1.61849,0,-11.6617	1/1:44:0,44:0:0:44:1572:-116.411,-13.2453,0	0/1:59:29,30:29:1036:30:1080:-65.0971,0,-73.4531	1/1:3:0,3:0:0:3:108:-8.55271,-0.90309,0	1/1:100:0,100:0:0:100:3592:-281.12,-30.103,0	0/1:85:52,33:52:1864:33:1184:-64.7357,0,-137.432	1/1:26:0,26:0:0:26:936:-68.0644,-7.82678,0	1/1:54:0,54:0:0:54:1921:-145.6,-16.2556,0	1/1:81:1,80:1:36:80:2880:-216.061,-21.3289,0	0/1:91:47,44:47:1684:44:1576:-92.2082,0,-120.905	1/1:11:0,10:0:0:10:360:-26.1249,-3.0103,0	1/1:30:0,30:0:0:30:1076:-73.5039,-9.0309,0	1/1:33:0,33:0:0:33:1180:-91.7899,-9.93399,0	1/1:11:0,11:0:0:11:396:-30.0946,-3.31133,0	0/1:66:51,15:51:1812:15:540:-17.3444,0,-134.835	0/1:12:5,7:5:180:7:248:-13.8248,0,-12.2783	1/1:55:0,55:0:0:55:1964:-142.107,-16.5567,0	1/1:87:0,87:0:0:87:3124:-236.259,-26.1896,0	0/1:64:28,36:28:1008:36:1292:-69.587,0,-68.3321	1/1:58:5,53:5:180:53:1904:-116.747,-2.7122,0	0/1:11:3,8:3:108:8:284:-17.3718,0,-6.36124	0/1:61:33,28:33:1180:28:1004:-54.8994,0,-84.5666	1/1:59:0,59:0:0:59:2088:-144.12,-17.7608,0	1/1:132:0,132:0:0:132:4735:-357.79,-39.736,0	0/1:31:12,19:12:428:19:684:-43.2862,0,-28.2767	1/1:34:0,34:0:0:34:1224:-92.1273,-10.235,0	0/1:16:8,8:8:288:8:284:-16.9243,0,-20.9362	1/1:76:0,76:0:0:76:2723:-207.531,-22.8783,0	0/1:9:3,6:3:108:6:216:-12.3398,0,-7.03507	1/1:48:0,48:0:0:48:1720:-119.108,-14.4494,0	1/1:43:0,43:0:0:43:1548:-106.813,-12.9443,0	0/1:20:13,7:13:468:7:252:-12.5571,0,-35.3519	0/1:49:25,24:25:892:24:860:-47.8343,0,-62.6399	0/1:32:18,14:18:644:14:495:-27.7637,0,-46.3629	1/1:94:0,94:0:0:94:3364:-254.035,-28.2968,0	1/1:53:0,53:0:0:53:1896:-144.251,-15.9546,0
chr03	25822022	.	TTA	CTT,CTA	85104.3	PASS	AB=0.527761,0.470409;ABP=13.9816,15.4761;AC=150,38;AF=0.797872,0.202128;AN=188;AO=4207,781;CIGAR=1X1M1X,1X2M;DP=4997;DPB=4997;DPRA=53.7204,0.800377;EPP=9138.39,1664.36;EPPR=0;GTI=3;LEN=3,1;MEANALT=1.53763,2.04762;MQM=31.0174,42.0333;MQMR=0;NS=94;NUMALT=2;ODDS=0.596107;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=149713,27841;QR=0;RO=0;RPL=4207,777;RPP=9138.39,1664.36;RPPR=0;RPR=0,4;RUN=1,1;SAF=0,0;SAP=9138.39,1698.93;SAR=4207,781;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,19,21:0:0:19,21:679,734:-97.3981,-56.4356,-50.716,-41.2628,0,-34.9411	1/1:33:0,33,0:0:0:33,0:1163,0:-80.9427,-9.93399,0,-80.9427,-9.93399,-80.9427	1/2:134:0,92,42:0:0:92,42:3258,1477:-312.142,-114.665,-86.9706,-197.793,0,-185.15	1/1:135:0,135,0:0:0:135,0:4807,0:-364.212,-40.6391,0,-364.212,-40.6391,-364.212	1/1:40:0,40,0:0:0:40,0:1430,0:-104.776,-12.0412,0,-104.776,-12.0412,-104.776	1/1:20:0,20,0:0:0:20,0:705,0:-48.4626,-6.0206,0,-48.4626,-6.0206,-48.4626	1/2:48:0,18,29:0:0:18,29:636,1040:-126.412,-83.0416,-77.6231,-43.3984,0,-34.6685	1/1:53:0,53,0:0:0:53,0:1894,0:-129.438,-15.9546,0,-129.438,-15.9546,-129.438	1/1:31:0,31,0:0:0:31,0:1094,0:-75.945,-9.33193,0,-75.945,-9.33193,-75.945	1/2:37:0,20,17:0:0:20,17:692,612:-97.4699,-49.3085,-43.2879,-48.4908,0,-43.3733	1/1:22:0,22,0:0:0:22,0:782,0:-60.3631,-6.62266,0,-60.3631,-6.62266,-60.3631	1/1:80:0,80,0:0:0:80,0:2841,0:-197.62,-24.0824,0,-197.62,-24.0824,-197.62	1/1:50:0,50,0:0:0:50,0:1794,0:-124.09,-15.0515,0,-124.09,-15.0515,-124.09	1/1:34:0,34,0:0:0:34,0:1214,0:-89.2646,-10.235,0,-89.2646,-10.235,-89.2646	1/1:45:0,45,0:0:0:45,0:1609,0:-122.038,-13.5464,0,-122.038,-13.5464,-122.038	1/2:41:0,33,8:0:0:33,8:1186,288:-99.3742,-23.1615,-13.2275,-76.5513,0,-74.1431	1/2:26:0,15,11:0:0:15,11:538,396:-63.5248,-31.1728,-26.6573,-32.6666,0,-29.3553	1/1:14:0,14,0:0:0:14,0:494,0:-35.282,-4.21442,0,-35.282,-4.21442,-35.282	1/2:13:0,11,2:0:0:11,2:394,72:-29.6712,-5.98637,-2.67504,-24.0203,0,-23.4183	1/1:83:0,82,0:0:0:82,0:2902,0:-221.278,-24.6845,0,-221.278,-24.6845,-221.278	1/1:99:0,99,0:0:0:99,0:3516,0:-257.067,-29.802,0,-257.067,-29.802,-257.067	1/2:106:0,50,56:0:0:50,56:1792,2013:-287.338,-162.339,-147.287,-125.331,0,-108.474	1/1:80:0,80,0:0:0:80,0:2853,0:-217.81,-24.0824,0,-217.81,-24.0824,-217.81	1/2:35:0,12,23:0:0:12,23:422,828:-93.8624,-65.8453,-62.2329,-28.3297,0,-21.406	1/1:67:0,67,0:0:0:67,0:2376,0:-174.278,-20.169,0,-174.278,-20.169,-174.278	1/2:112:0,63,49:0:0:63,49:2254,1748:-295.118,-140.96,-121.995,-154.49,0,-139.739	1/1:155:0,155,0:0:0:155,0:5519,0:-403.135,-46.6597,0,-403.135,-46.6597,-403.135	1/2:17:0,7,10:0:0:7,10:242,360:-44.6908,-28.8643,-26.7571,-16.1385,0,-13.1282	1/1:178:0,178,0:0:0:178,0:6323,0:-492.637,-53.5833,0,-492.637,-53.5833,-492.637	1/1:49:0,49,0:0:0:49,0:1758,0:-128.799,-14.7505,0,-128.799,-14.7505,-128.799	1/1:53:0,53,0:0:0:53,0:1899,0:-145.778,-15.9546,0,-145.778,-15.9546,-145.778	1/2:4:0,3,1:0:0:3,1:108,36:-10.091,-3.20167,-2.29858,-7.22465,0,-6.92362	1/2:16:0,11,5:0:0:11,5:383,180:-40.0546,-14.6073,-11.2959,-25.7791,0,-24.2739	1/1:6:0,6,0:0:0:6,0:216,0:-15.0491,-1.80618,0,-15.0491,-1.80618,-15.0491	1/1:3:0,3,0:0:0:3,0:108,0:-7.66137,-0.90309,0,-7.66137,-0.90309,-7.66137	1/1:11:0,11,0:0:0:11,0:388,0:-27.9304,-3.31133,0,-27.9304,-3.31133,-27.9304	1/1:112:0,112,0:0:0:112,0:3999,0:-310.922,-33.7154,0,-310.922,-33.7154,-310.922	1/1:75:0,75,0:0:0:75,0:2671,0:-195.716,-22.5773,0,-195.716,-22.5773,-195.716	1/2:19:0,13,6:0:0:13,6:468,216:-46.0249,-17.1935,-13.2801,-29.1563,0,-27.3501	2/2:1:0,0,1:0:0:0,1:0,36:-3.5027,-3.5027,-3.5027,-0.30103,-0.30103,0	1/2:64:0,39,25:0:0:39,25:1400,894:-160.646,-70.3665,-58.6264,-90.6035,0,-83.0778	1/1:25:0,25,0:0:0:25,0:896,0:-64.8202,-7.52575,0,-64.8202,-7.52575,-64.8202	1/2:118:0,57,61:0:0:57,61:2033,2160:-303.772,-169.752,-152.593,-134.337,0,-115.974	1/2:20:0,16,4:0:0:16,4:564,144:-49.1142,-11.8795,-7.06305,-37.576,0,-36.3719	1/1:33:0,33,0:0:0:33,0:1186,0:-91.1817,-9.93399,0,-91.1817,-9.93399,-91.1817	1/1:73:0,73,0:0:0:73,0:2597,0:-200.734,-21.9752,0,-200.734,-21.9752,-200.734	1/1:83:0,83,0:0:0:83,0:2961,0:-205.144,-24.9855,0,-205.144,-24.9855,-205.144	1/1:109:0,109,0:0:0:109,0:3863,0:-291.41,-32.8123,0,-291.41,-32.8123,-291.41	1/1:57:0,57,0:0:0:57,0:2027,0:-155.148,-17.1587,0,-155.148,-17.1587,-155.148	1/1:77:0,77,0:0:0:77,0:2739,0:-209.27,-23.1793,0,-209.27,-23.1793,-209.27	1/1:123:0,123,0:0:0:123,0:4391,0:-344.191,-37.0267,0,-344.191,-37.0267,-344.191	1/1:5:0,5,0:0:0:5,0:180,0:-14.0509,-1.50515,0,-14.0509,-1.50515,-14.0509	1/2:80:0,50,30:0:0:50,30:1791,1063:-190.702,-82.8268,-67.7753,-108.19,0,-99.1587	1/1:40:0,39,0:0:0:39,0:1399,0:-109.469,-11.7402,0,-109.469,-11.7402,-109.469	1/2:7:0,2,5:0:0:2,5:72,180:-18.6881,-14.3855,-13.7834,-4.59672,0,-3.09157	1/2:78:0,45,33:0:0:45,33:1593,1178:-196.321,-93.065,-79.5186,-103.577,0,-93.6431	1/1:53:0,52,0:0:0:52,0:1846,0:-142.042,-15.6536,0,-142.042,-15.6536,-142.042	1/2:6:0,4,2:0:0:4,2:144,72:-16.2076,-6.19699,-4.99287,-10.3533,0,-9.75128	1/2:5:0,1,4:0:0:1,4:36,144:-14.4643,-11.9628,-11.6617,-2.82261,0,-1.61849	1/1:44:0,43,1:0:0:43,1:1536,36:-113.103,-12.9443,0,-110.25,-9.74262,-109.949	1/2:62:0,32,30:0:0:32,30:1144,1076:-163.954,-85.9199,-76.2869,-78.3619,0,-69.331	1/1:4:0,4,0:0:0:4,0:142,0:-11.2399,-1.20412,0,-11.2399,-1.20412,-11.2399	1/1:101:0,101,0:0:0:101,0:3596,0:-282.52,-30.404,0,-282.52,-30.404,-282.52	1/2:86:0,34,52:0:0:34,52:1224,1847:-229.432,-147.222,-136.987,-82.5301,0,-66.8765	1/1:26:0,26,0:0:0:26,0:924,0:-67.6927,-7.82678,0,-67.6927,-7.82678,-67.6927	1/1:59:0,59,0:0:0:59,0:2080,0:-158.537,-17.7608,0,-158.537,-17.7608,-158.537	1/1:83:0,82,1:0:0:82,1:2924,32:-223.28,-24.6845,0,-220.972,-22.0864,-220.671	1/2:90:0,44,46:0:0:44,46:1549,1646:-236.389,-131.406,-118.16,-105.307,0,-91.4598	1/1:11:0,11,0:0:0:11,0:396,0:-29.0276,-3.31133,0,-29.0276,-3.31133,-29.0276	1/1:29:0,29,0:0:0:29,0:1032,0:-70.9129,-8.72987,0,-70.9129,-8.72987,-70.9129	1/1:33:0,33,0:0:0:33,0:1170,0:-91.2502,-9.93399,0,-91.2502,-9.93399,-91.2502	1/1:11:0,11,0:0:0:11,0:394,0:-30.0742,-3.31133,0,-30.0742,-3.31133,-30.0742	1/2:66:0,15,51:0:0:15,51:528,1809:-172.462,-140.327,-135.812,-32.4216,0,-17.069	1/2:12:0,7,5:0:0:7,5:244,180:-29.2593,-14.3855,-12.2783,-15.1879,0,-13.6828	1/1:56:0,55,0:0:0:55,0:1942,0:-140.961,-16.5567,0,-140.961,-16.5567,-140.961	1/1:89:0,89,0:0:0:89,0:3168,0:-240.507,-26.7917,0,-240.507,-26.7917,-240.507	1/2:64:0,36,28:0:0:36,28:1284,1004:-156.383,-78.8815,-68.0444,-77.8154,0,-69.3865	1/1:58:0,53,5:0:0:53,5:1892,167:-130.922,-15.9546,0,-118.248,-2.9687,-116.743	1/2:11:0,8,3:0:0:8,3:284,108:-26.7293,-8.76948,-6.36124,-18.2884,0,-17.3853	1/2:62:0,28,33:0:0:28,33:993,1170:-156.415,-92.1508,-83.722,-64.2301,0,-54.2961	1/1:60:0,60,0:0:0:60,0:2135,0:-147.113,-18.0618,0,-147.113,-18.0618,-147.113	1/1:135:0,134,0:0:0:134,0:4759,0:-361.592,-40.338,0,-361.592,-40.338,-361.592	1/2:32:0,19,13:0:0:19,13:673,462:-82.8282,-37.0793,-31.3597,-46.0776,0,-42.1642	1/1:34:0,34,0:0:0:34,0:1203,0:-91.2944,-10.235,0,-91.2944,-10.235,-91.2944	1/2:17:0,9,8:0:0:9,8:316,288:-44.6991,-23.3445,-20.6352,-21.6814,0,-19.2731	1/1:77:0,77,0:0:0:77,0:2744,0:-209.727,-23.1793,0,-209.727,-23.1793,-209.727	1/2:9:0,6,3:0:0:6,3:214,108:-21.7305,-8.84125,-7.03507,-13.2123,0,-12.3092	1/1:50:0,49,0:0:0:49,0:1722,0:-120.602,-14.7505,0,-120.602,-14.7505,-120.602	1/1:43:0,42,1:0:0:42,1:1502,36:-103.198,-12.6433,0,-100.388,-9.4898,-100.087	1/2:20:0,7,13:0:0:7,13:244,468:-53.3332,-37.4591,-35.3519,-16.1825,0,-12.2691	1/2:50:0,25,24:0:0:25,24:880,860:-124.678,-67.8607,-60.3349,-56.8615,0,-49.6368	1/2:32:0,14,18:0:0:14,18:502,637:-83.7904,-50.5567,-46.3422,-33.5512,0,-28.1327	1/1:94:0,93,1:0:0:93,1:3324,36:-250.022,-27.9958,0,-247.14,-24.7607,-246.839	1/1:54:0,54,0:0:0:54,0:1924,0:-146.659,-16.2556,0,-146.659,-16.2556,-146.659
chr03	25826139	.	AAA	GAG,GAA	437581	PASS	AB=0.471212,0.525657;ABP=44.3929,35.8808;AC=150,38;AF=0.797872,0.202128;AN=188;AO=13376,3053;CIGAR=1X1M1X,1X2M;DP=16489;DPB=16497;DPRA=0,1.0732;EPP=29039.9,6632.52;EPPR=22.5536;GTI=1;LEN=3,1;MEANALT=2.01064,2.44;MQM=59.8355,59.9473;MQMR=58.8889;NS=94;NUMALT=2;ODDS=1.91972;PAIRED=0,0;PAIREDR=0;PAO=9.5,9.5;PQA=323.5,323.5;PQR=0;PRO=5;QA=463880,107178;QR=324;RO=9;RPL=9013,1842;RPP=3513.23,286.206;RPPR=3.25157;RPR=4363,1211;RUN=1,1;SAF=9014,1842;SAP=3516.25,286.206;SAR=4362,1211;SRF=4;SRP=3.25157;SRR=5;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:74:0,30,44:0:0:30,44:1033,1524:-208.106,-124.204,-115.174,-84.2463,0,-71.001	1/1:198:0,197,1:0:0:197,1:6815,36:-613.088,-59.3029,0,-610.151,-56.0057,-609.85	1/2:195:1,79,114:1:36:79,114:2760,3951:-542.387,-318.175,-297.331,-221.637,0,-190.258	1/1:439:0,437,0:0:0:437,0:15078,0:-1356.53,-131.55,0,-1356.53,-131.55,-1356.53	1/1:78:0,78,0:0:0:78,0:2705,0:-243.686,-23.4803,0,-243.686,-23.4803,-243.686	1/1:38:0,38,0:0:0:38,0:1351,0:-121.891,-11.4391,0,-121.891,-11.4391,-121.891	1/2:236:0,119,116:0:0:119,116:4119,4064:-665.401,-330.669,-294.846,-334.721,0,-299.801	1/1:232:0,231,0:0:0:231,0:7955,0:-715.639,-69.5379,0,-715.639,-69.5379,-715.639	1/1:128:0,128,0:0:0:128,0:4425,0:-398.431,-38.5318,0,-398.431,-38.5318,-398.431	1/2:245:0,101,144:0:0:101,144:3486,5087:-697.801,-414.625,-384.221,-283.524,0,-240.176	1/1:116:0,116,0:0:0:116,0:4075,0:-366.921,-34.9195,0,-366.921,-34.9195,-366.921	1/1:78:1,77,0:1:36:77,0:2664,0:-236.352,-19.8821,0,-236.653,-23.1793,-239.591	1/1:82:1,80,0:1:36:80,0:2784,0:-247.265,-21.0851,0,-247.566,-24.0824,-250.504	1/1:143:0,141,0:0:0:141,0:4865,0:-437.772,-42.4452,0,-437.772,-42.4452,-437.772	1/1:180:2,178,0:2:72:178,0:6222,0:-553.222,-47.356,0,-553.824,-53.5833,-559.692	1/2:129:0,62,67:0:0:62,67:2156,2351:-366.962,-191.675,-173.012,-175.636,0,-155.467	1/2:96:0,39,57:0:0:39,57:1331,1982:-269.49,-161.492,-149.751,-108.342,0,-91.1835	1/1:77:0,77,0:0:0:77,0:2617,0:-235.777,-23.1793,0,-235.777,-23.1793,-235.777	1/2:55:0,21,34:0:0:21,34:727,1196:-156.791,-97.7094,-91.3878,-59.4293,0,-49.1943	1/1:362:0,361,0:0:0:361,0:12542,0:-1128.43,-108.672,0,-1128.43,-108.672,-1128.43	1/1:303:0,302,0:0:0:302,0:10437,0:-938.839,-90.9111,0,-938.839,-90.9111,-938.839	1/2:138:0,52,86:0:0:52,86:1838,3016:-395.46,-245.783,-230.13,-150.029,0,-124.14	1/1:157:0,157,0:0:0:157,0:5466,0:-492.08,-47.2617,0,-492.08,-47.2617,-492.08	1/2:237:0,135,102:0:0:135,102:4710,3628:-679.098,-296.021,-255.382,-383.43,0,-352.725	1/1:117:0,117,0:0:0:117,0:4092,0:-368.45,-35.2205,0,-368.45,-35.2205,-368.45	1/2:561:0,331,230:0:0:331,230:11381,8140:-1587.44,-663.387,-563.746,-924.402,0,-855.165	1/1:473:0,470,1:0:0:470,1:16368,36:-1472.4,-141.484,0,-1469.46,-138.543,-1469.16	1/2:100:0,50,50:0:0:50,50:1686,1745:-278.904,-142.28,-127.228,-136.967,0,-121.916	1/1:418:0,416,1:0:0:416,1:14407,36:-1296.07,-125.228,0,-1293.14,-122.246,-1292.84	1/1:284:0,273,11:0:0:273,11:9568,396:-860.613,-82.1812,0,-828.301,-49.5098,-824.989	1/1:254:0,251,1:0:0:251,1:8633,36:-776.541,-75.5585,0,-773.603,-72.5945,-773.302	1/2:20:0,11,9:0:0:11,9:392,324:-58.7458,-26.795,-23.4837,-32.3089,0,-29.5997	1/2:24:0,12,12:0:0:12,12:417,428:-69.144,-35.2464,-31.6341,-34.2494,0,-30.6371	1/2:5:0,3,2:0:0:3,2:98,68:-13.7618,-5.85565,-4.95256,-8.24069,0,-7.63863	1/1:4:0,4,0:0:0:4,0:125,0:-11.5586,-1.20412,0,-11.5586,-1.20412,-11.5586	1/1:8:0,8,0:0:0:8,0:269,0:-24.5363,-2.40824,0,-24.5363,-2.40824,-24.5363	1/1:429:0,428,0:0:0:428,0:14803,0:-1331.68,-128.841,0,-1331.68,-128.841,-1331.68	1/1:284:0,284,0:0:0:284,0:9859,0:-887.286,-85.4925,0,-887.286,-85.4925,-887.286	1/2:81:0,28,53:0:0:28,53:967,1890:-232.985,-154.423,-145.994,-78.9105,0,-62.9559	1/1:3:0,3,0:0:0:3,0:88,0:-8.21137,-0.90309,0,-8.21137,-0.90309,-8.21137	1/2:274:0,150,124:0:0:150,124:5200,4382:-779.814,-357.168,-312.013,-422.937,0,-385.609	1/1:57:0,57,0:0:0:57,0:1983,0:-178.73,-17.1587,0,-178.73,-17.1587,-178.73	1/2:227:0,119,107:0:0:119,107:4101,3789:-641.677,-308.578,-272.755,-333.03,0,-300.819	1/2:180:0,84,96:0:0:84,96:2926,3315:-507.609,-269.672,-244.385,-238.284,0,-209.385	1/1:143:1,142,0:1:36:142,0:4958,0:-442.761,-39.449,0,-443.062,-42.7463,-445.999	1/1:221:0,221,0:0:0:221,0:7667,0:-690,-66.5276,0,-690,-66.5276,-690	1/1:162:0,162,0:0:0:162,0:5597,0:-503.869,-48.7669,0,-503.869,-48.7669,-503.869	1/1:412:0,410,0:0:0:410,0:14271,0:-1283.7,-123.422,0,-1283.7,-123.422,-1283.7	1/1:221:0,220,0:0:0:220,0:7662,0:-689.122,-66.2266,0,-689.122,-66.2266,-689.122	1/1:249:0,246,1:0:0:246,1:8635,36:-776.806,-74.0534,0,-773.869,-71.076,-773.568	1/1:211:0,209,0:0:0:209,0:7253,0:-652.483,-62.9153,0,-652.483,-62.9153,-652.483	1/1:21:0,21,0:0:0:21,0:746,0:-67.4652,-6.32163,0,-67.4652,-6.32163,-67.4652	1/2:167:0,60,107:0:0:60,107:2090,3782:-478.305,-308.347,-290.285,-170.308,0,-138.098	1/1:160:0,160,0:0:0:160,0:5533,0:-498.069,-48.1648,0,-498.069,-48.1648,-498.069	1/2:15:0,3,12:0:0:3,12:100,424:-42.9736,-34.8841,-33.981,-8.42677,0,-4.81441	1/2:271:0,138,132:0:0:138,132:4689,4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chr03	25826989	.	C	T	66943	PASS	AB=0.511845;ABP=4.70788;AC=146;AF=0.784946;AN=186;AO=3102;CIGAR=1X;DP=3805;DPB=3805;DPRA=0;EPP=6738.92;EPPR=1529.56;GTI=3;LEN=1;MEANALT=1;MQM=59.9533;MQMR=59.926;NS=93;NUMALT=1;ODDS=0.15303;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110861;QR=25075;RO=703;RPL=0;RPP=6738.92;RPPR=1529.56;RPR=3102;RUN=1;SAF=3102;SAP=6738.92;SAR=0;SRF=703;SRP=1529.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:5,16:5:180:16:572:-45.4918,0,-10.2304	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:69:26,43:26:932:43:1526:-116.862,0,-63.4278	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	1/1:82:1,81:1:36:81:2865:-254.487,-21.0862,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:35:13,22:13:468:22:788:-60.7087,0,-31.9236	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:54:0,54:0:0:54:1935:-174.425,-16.2556,0	1/1:57:0,57:0:0:57:2044:-184.196,-17.1587,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	0/1:35:19,16:19:680:16:568:-40.9158,0,-50.9931	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:15:10,5:10:343:5:180:-12.0366,0,-26.6851	1/1:58:0,58:0:0:58:2084:-187.829,-17.4597,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:24:13,11:13:464:11:384:-27.6684,0,-34.8728	1/1:46:0,46:0:0:46:1632:-146.892,-13.8474,0	0/1:21:9,12:9:320:12:428:-32.5372,0,-22.8207	1/1:18:0,18:0:0:18:644:-58.2893,-5.41854,0	0/1:117:42,75:42:1504:75:2684:-206.567,0,-100.434	1/1:60:0,60:0:0:60:2141:-192.956,-18.0618,0	0/1:21:13,8:13:460:8:288:-19.9458,0,-35.4137	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	1/1:67:5,62:5:176:62:2213:-183.25,-3.98399,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:21:16,5:16:567:5:180:-10.2304,0,-45.0391	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:50:29,21:29:1044:21:756:-53.3157,0,-79.2233	1/1:23:0,23:0:0:23:810:-73.219,-6.92369,0	0/1:67:36,31:36:1288:31:1112:-80.2223,0,-96.0546	0/1:27:18,9:18:631:9:324:-21.378,0,-48.9879	1/1:34:0,34:0:0:34:1195:-107.855,-10.235,0	1/1:59:0,59:0:0:59:2105:-189.718,-17.7608,0	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	1/1:104:0,104:0:0:104:3720:-335.002,-31.3071,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:39:0,39:0:0:39:1385:-124.946,-11.7402,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:50:17,33:17:604:33:1169:-90.4637,0,-39.6382	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/1:58:25,33:25:896:33:1184:-89.4086,0,-63.2727	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:52:0,52:0:0:52:1855:-167.229,-15.6536,0	0/1:43:21,22:21:748:22:780:-57.5786,0,-54.4303	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:68:0,68:0:0:68:2433:-219.226,-20.47,0	0/1:76:31,45:31:1108:45:1610:-122.308,0,-77.1514	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	1/1:63:0,63:0:0:63:2222:-200.241,-18.9649,0	0/1:140:86,54:86:3065:54:1924:-131.293,0,-233.934	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:78:43,35:43:1536:35:1240:-88.4216,0,-115.053	0/1:65:45,20:45:1616:20:716:-45.2008,0,-126.163	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:63:14,49:14:500:49:1756:-139.359,0,-26.3713	1/1:38:0,38:0:0:38:1353:-122.068,-11.4391,0	0/1:19:15,4:15:540:4:144:-7.59312,0,-43.217	0/1:50:20,30:20:712:30:1076:-82.1014,0,-49.3552	1/1:38:0,38:0:0:38:1360:-122.7,-11.4391,0	1/1:104:0,104:0:0:104:3713:-334.371,-31.3071,0	0/1:34:10,24:10:360:24:860:-67.4868,0,-22.5093	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:26:12,14:12:419:14:504:-37.8713,0,-30.2159	1/1:65:2,63:2:72:63:2246:-195.565,-12.7302,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/0:15:14,1:14:504:1:36:0,-0.917175,-42.0998	0/1:49:18,31:18:631:31:1116:-86.0012,0,-42.3652	0/1:31:25,6:25:883:6:216:-10.4586,0,-70.4555	1/1:51:0,51:0:0:51:1801:-162.367,-15.3525,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0
chr03	25826994	.	T	G	11384.7	PASS	AB=0.485492;ABP=5.59363;AC=40;AF=0.215054;AN=186;AO=707;CIGAR=1X;DP=3855;DPB=3855;DPRA=0.863036;EPP=1538.24;EPPR=6834.46;GTI=3;LEN=1;MEANALT=1.02439;MQM=59.9378;MQMR=59.9727;NS=93;NUMALT=1;ODDS=0.284849;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25273;QR=112631;RO=3146;RPL=0;RPP=1538.24;RPPR=6834.46;RPR=707;RUN=1;SAF=707;SAP=1538.24;SAR=0;SRF=3146;SRP=6834.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:69:43,26:43:1544:26:924:-62.7066,0,-118.482	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/0:83:83,0:83:2957:0:0:0,-24.9855,-266.362	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:34:21,13:21:756:13:468:-32.2246,0,-58.1322	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.235	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.079	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:59:59,0:59:2082:0:0:0,-17.7608,-187.647	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:24:11,13:11:381:13:468:-35.2349,0,-27.3958	0/0:47:46,0:46:1648:0:0:0,-13.8474,-148.371	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2895	0/1:118:76,42:76:2720:42:1474:-97.4289,0,-209.504	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818	0/0:69:64,5:64:2273:5:180:0,-4.219,-188.279	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:22:6,16:6:216:16:576:-45.5523,0,-13.1679	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:52:23,29:23:828:29:1044:-78.6212,0,-59.1906	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:68:30,38:30:1080:38:1368:-102.906,0,-77.0432	0/1:28:10,18:10:360:18:648:-50.223,0,-24.3155	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.684	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:51:34,17:34:1224:17:604:-39.3372,0,-95.1136	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:60:35,25:35:1241:25:900:-63.2592,0,-93.9307	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:44:23,21:23:824:21:756:-54.8512,0,-61.2376	0/1:4:3,1:3:93:1:36:-2.39415,0,-7.47261	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.102	0/1:79:46,32:46:1641:32:1133:-78.5807,0,-124.283	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.977	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:142:55,87:55:1972:87:3083:-234.948,0,-135.008	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:78:35,43:35:1256:43:1548:-116.133,0,-89.8588	0/1:67:19,48:19:676:48:1713:-134.285,0,-40.999	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:63:50,13:50:1796:13:468:-23.4948,0,-142.957	0/0:39:39,0:39:1381:0:0:0,-11.7402,-124.587	0/1:19:4,15:4:144:15:540:-43.217,0,-7.59312	0/1:51:31,20:31:1101:20:720:-49.7762,0,-84.0458	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.726	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.841	0/1:35:24,11:24:864:11:392:-25.084,0,-67.5465	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:27:14,13:14:500:13:468:-34.3318,0,-37.2084	0/0:64:62,2:62:2232:2:72:0,-12.4292,-194.307	0/1:11:6,5:6:208:5:180:-13.2407,0,-15.7478	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	1/1:15:1,14:1:36:14:489:-40.7406,-0.917175,0	0/1:50:32,18:32:1148:18:648:-43.6004,0,-88.5783	0/1:30:7,23:7:252:23:813:-64.4582,0,-13.9981	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.396	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613
chr03	25827124	.	T	G	17158.4	PASS	AB=0.523664;ABP=12.5681;AC=39;AF=0.209677;AN=186;AO=1037;CIGAR=1X;DP=5802;DPB=5802;DPRA=0.750896;EPP=2254.83;EPPR=10343.6;GTI=1;LEN=1;MEANALT=1.02222;MQM=58.6779;MQMR=59.8664;NS=93;NUMALT=1;ODDS=0.491269;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36909;QR=170418;RO=4762;RPL=0;RPP=2254.83;RPPR=10343.6;RPR=1037;RUN=1;SAF=0;SAP=2254.83;SAR=1037;SRF=0;SRP=10343.6;SRR=4762;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/1:94:53,41:53:1885:41:1464:-103.723,0,-141.612	0/0:110:110,0:110:3930:0:0:0,-33.1133,-353.646	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.657	0/1:44:14,30:14:500:30:1067:-83.0841,0,-32.0909	0/0:112:112,0:112:4011:0:0:0,-33.7154,-360.86	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:39:9,30:9:320:30:1080:-85.3748,0,-17.4018	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5128	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.722	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.16	0/1:36:19,17:19:680:17:603:-43.7624,0,-50.6921	0/1:67:29,38:29:1044:38:1340:-100.633,0,-74.1058	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:17:5,12:5:176:12:423:-33.2876,0,-11.0675	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.253	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.193	0/1:96:38,58:38:1364:58:2076:-158.013,0,-94.16	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.83	0/1:56:30,26:30:1065:26:911:-65.4023,0,-79.3021	0/0:47:46,1:46:1648:1:36:0,-10.5501,-144.768	0/1:195:123,72:123:4397:72:2583:-173.767,0,-337.195	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.288	0/1:22:4,18:4:144:18:640:-51.3067,0,-6.68005	0/0:196:196,0:196:6976:0:0:0,-59.0019,-627.895	0/0:70:67,3:67:2396:3:108:0,-10.9969,-205.822	0/0:76:76,0:76:2701:0:0:0,-22.8783,-243.313	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.87	0/0:203:203,0:203:7276:0:0:0,-61.1091,-654.845	0/1:41:15,26:15:540:26:932:-71.8126,0,-36.5943	.:.:.:.:.:.:.:.	0/1:94:54,40:54:1936:40:1410:-98.8475,0,-146.22	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:96:50,46:50:1796:46:1620:-117.151,0,-133.023	0/1:40:21,19:21:756:19:684:-49.753,0,-56.3256	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.546	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.179	0/0:97:96,0:96:3429:0:0:0,-28.8989,-308.462	0/0:192:192,0:192:6851:0:0:0,-57.7978,-616.645	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.811	0/0:103:102,1:102:3653:1:36:0,-27.4083,-324.838	0/0:85:85,0:85:3033:0:0:0,-25.5875,-273.199	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3132	0/1:88:35,53:35:1211:53:1900:-144.743,0,-82.7605	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.127	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:83:48,35:48:1705:35:1251:-87.8295,0,-128.748	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:13:5,7:5:180:7:248:-18.6871,0,-12.58	0/1:7:4,3:4:144:3:108:-7.96514,0,-11.2064	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.325	0/1:99:52,47:52:1868:47:1659:-119.626,0,-138.596	0/1:8:3,5:3:108:5:180:-13.6419,0,-7.6661	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.269	0/1:113:61,52:61:2183:52:1860:-133.61,0,-162.718	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.886	0/0:92:92,0:92:3278:0:0:0,-27.6948,-294.745	0/1:53:18,35:18:644:35:1260:-97.6041,0,-42.336	0/0:15:14,1:14:504:1:32:0,-1.31614,-42.4988	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.145	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:28:12,16:12:428:16:568:-43.023,0,-30.43	0/1:35:16,19:16:568:19:680:-50.9931,0,-40.9158	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.772	0/0:95:94,0:94:3376:0:0:0,-28.2968,-303.692	0/1:97:36,61:36:1296:61:2162:-165.631,0,-87.744	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.714	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:65:44,21:44:1584:21:756:-48.6652,0,-123.285	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.883	0/0:96:95,1:95:3412:1:36:0,-25.301,-303.692	0/1:73:25,48:25:896:48:1686:-129.941,0,-58.9852	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1594	0/1:40:21,19:21:756:19:668:-48.2963,0,-56.326	0/0:101:100,1:100:3584:1:36:0,-26.8062,-319.168	0/1:34:15,19:15:540:19:671:-50.4445,0,-38.7015	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:29:9,20:9:324:20:716:-55.9928,0,-20.776	0/1:53:18,35:18:644:35:1252:-97.025,0,-42.2909	0/1:56:21,35:21:752:35:1235:-94.4928,0,-51.1482	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.52	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378
chr03	25873427	.	AAAAC	CAAAT,AAAAT	86312.4	PASS	AB=0.510096,0.488462;ABP=4.85188,5.41562;AC=148,40;AF=0.787234,0.212766;AN=188;AO=4412,1094;CIGAR=1X3M1X,4M1X;DP=5516;DPB=5516.8;DPRA=0,0.942635;EPP=9583.55,2378.6;EPPR=0;GTI=4;LEN=5,1;MEANALT=1.57447,2.09091;MQM=28.575,39.9799;MQMR=0;NS=94;NUMALT=2;ODDS=0.0958937;PAIRED=0,0;PAIREDR=0;PAO=3,0.5;PQA=82,0;PQR=0;PRO=0.5;QA=155564,39183;QR=0;RO=0;RPL=4412,1094;RPP=9583.55,2378.6;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=9583.55,2378.6;SAR=4412,1094;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,19,11:0:0:19,11:662,396:-67.4004,-30.4841,-24.7646,-37.2218,0,-33.9105	1/1:82:0,82,0:0:0:82,0:2900,0:-187.557,-24.6845,0,-187.557,-24.6845,-187.557	1/2:97:0,39,58:0:0:39,58:1366,2088:-235.12,-158.057,-146.317,-77.349,0,-59.8893	1/1:69:0,69,0:0:0:69,0:2411,0:-177.208,-20.7711,0,-177.208,-20.7711,-177.208	1/1:39:0,39,0:0:0:39,0:1368,0:-95.217,-11.7402,0,-95.217,-11.7402,-95.217	1/1:33:0,33,0:0:0:33,0:1156,0:-75.2299,-9.93399,0,-75.2299,-9.93399,-75.2299	1/2:74:0,56,18:0:0:56,18:1959,648:-179.108,-51.0885,-34.2308,-128.352,0,-122.933	1/1:81:0,81,0:0:0:81,0:2857,0:-185.255,-24.3834,0,-185.255,-24.3834,-185.255	1/1:76:0,76,0:0:0:76,0:2684,0:-174.303,-22.8783,0,-174.303,-22.8783,-174.303	1/2:61:0,36,25:0:0:36,25:1275,883:-151.376,-68.7682,-57.9311,-82.9249,0,-75.3991	1/1:75:0,75,0:0:0:75,0:2656,0:-194.252,-22.5773,0,-194.252,-22.5773,-194.252	1/1:80:0,80,0:0:0:80,0:2809,0:-182.349,-24.0824,0,-182.349,-24.0824,-182.349	1/1:56:0,56,0:0:0:56,0:1969,0:-126.801,-16.8577,0,-126.801,-16.8577,-126.801	1/1:96:0,95,1:0:0:95,1:3364,36:-231.917,-28.5979,0,-229.108,-25.4444,-228.807	1/1:63:0,62,0:0:0:62,0:2186,0:-159.463,-18.6639,0,-159.463,-18.6639,-159.463	1/2:60:0,38,22:0:0:38,22:1330,788:-141.925,-60.856,-49.4168,-81.3828,0,-74.7602	1/2:70:0,40,30:0:0:40,30:1426,1072:-161.554,-82.0522,-70.011,-79.803,0,-70.7721	1/1:73:0,73,0:0:0:73,0:2576,0:-165.77,-21.9752,0,-165.77,-21.9752,-165.77	1/2:49:0,39,10:0:0:39,10:1376,360:-102.415,-26.0681,-14.3279,-76.653,0,-73.6427	1/1:117:0,116,0:0:0:116,0:4107,0:-300.892,-34.9195,0,-300.892,-34.9195,-300.892	1/1:63:0,63,0:0:0:63,0:2210,0:-153.544,-18.9649,0,-153.544,-18.9649,-153.544	2/2:76:0,6,70:0:0:6,70:214,2516:-221.611,-206.987,-205.181,-21.0721,-6.13962,0	1/1:36:0,36,0:0:0:36,0:1243,0:-92.3427,-10.8371,0,-92.3427,-10.8371,-92.3427	1/2:42:0,27,15:0:0:27,15:948,528:-98.1166,-40.8436,-32.7158,-57.5835,0,-53.0681	1/1:32:0,32,0:0:0:32,0:1123,0:-78.5158,-9.63296,0,-78.5158,-9.63296,-78.5158	1/2:173:0,61,111:0:0:61,111:2127,3981:-458.424,-314.208,-295.846,-144.356,0,-110.942	1/1:52:0,52,0:0:0:52,0:1838,0:-127.001,-15.6536,0,-127.001,-15.6536,-127.001	1/2:33:0,20,13:0:0:20,13:713,468:-79.4126,-36.7513,-30.7307,-42.9769,0,-39.0635	1/1:83:0,82,0:0:0:82,0:2902,0:-222.725,-24.6845,0,-222.725,-24.6845,-222.725	1/2:49:0,44,5:0:0:44,5:1558,180:-108.332,-14.324,-1.07865,-94.3442,0,-92.8391	1/1:73:0,73,0:0:0:73,0:2557,0:-188.492,-21.9752,0,-188.492,-21.9752,-188.492	1/2:3:0,2,1:0:0:2,1:72,36:-7.42868,-3.15346,-2.5514,-4.59672,0,-4.29569	1/2:2:0,1,1:0:0:1,1:36,36:-5.2791,-3.15346,-2.85243,-2.43517,0,-2.13414	1/2:6:0,1,5:0:0:1,5:36,180:-16.0658,-14.0778,-13.7768,-2.25768,0,-0.752526	1/1:7:0,7,0:0:0:7,0:252,0:-16.3757,-2.10721,0,-16.3757,-2.10721,-16.3757	1/1:4:0,4,0:0:0:4,0:138,0:-9.19978,-1.20412,0,-9.19978,-1.20412,-9.19978	1/1:116:0,115,0:0:0:115,0:4050,0:-309.475,-34.6185,0,-309.475,-34.6185,-309.475	1/1:44:0,43,1:0:0:43,1:1526,36:-105.097,-12.9443,0,-102.287,-9.79083,-101.986	1/2:56:0,43,13:0:0:43,13:1534,460:-121.111,-34.7104,-21.7661,-86.712,0,-82.7986	1/2:6:0,1,5:0:0:1,5:36,180:-15.8767,-13.7247,-13.4237,-2.43517,0,-0.930022	1/2:83:0,42,41:0:0:42,41:1498,1453:-202.868,-112.843,-100.2,-90.3302,0,-77.9879	1/1:63:0,63,0:0:0:63,0:2223,0:-154.054,-18.9649,0,-154.054,-18.9649,-154.054	1/2:78:0,28,49:0:0:28,49:990,1764:-194.812,-135.279,-126.851,-59.5548,0,-44.8043	1/2:59:0,42,17:0:0:42,17:1466,612:-142.849,-48.2369,-35.5937,-94.94,0,-89.8225	1/1:55:0,55,0:0:0:55,0:1953,0:-142.102,-16.5567,0,-142.102,-16.5567,-142.102	1/1:46:0,46,0:0:0:46,0:1612,0:-121.152,-13.8474,0,-121.152,-13.8474,-121.152	1/1:48:0,47,0:0:0:47,0:1665,0:-108.066,-14.1484,0,-108.066,-14.1484,-108.066	1/1:58:0,58,0:0:0:58,0:2051,0:-151.002,-17.4597,0,-151.002,-17.4597,-151.002	1/1:49:0,48,1:0:0:48,1:1692,36:-124.059,-14.4494,0,-121.206,-11.2478,-120.905	1/1:70:0,68,2:0:0:68,2:2407,72:-175.704,-20.47,0,-170.14,-14.5657,-169.538	1/1:91:0,91,0:0:0:91,0:3212,0:-244.659,-27.3937,0,-244.659,-27.3937,-244.659	1/1:3:0,3,0:0:0:3,0:102,0:-7.93773,-0.90309,0,-7.93773,-0.90309,-7.93773	1/2:99:0,48,51:0:0:48,51:1696,1836:-233.723,-139.403,-124.953,-94.6136,0,-79.2611	1/1:27:0,26,0:0:0:26,0:916,0:-70.514,-7.82678,0,-70.514,-7.82678,-70.514	1/2:11:0,3,8:0:0:3,8:106,288:-27.2833,-21.484,-20.581,-6.06964,0,-3.6614	1/2:47:0,14,33:0:0:14,33:492,1184:-120.473,-90.4489,-86.2345,-30.3157,0,-20.3817	1/1:41:0,41,0:0:0:41,0:1469,0:-106.378,-12.3422,0,-106.378,-12.3422,-106.378	1/2:5:0,1,3:0:0:1,3:36,108:-11.1335,-8.69194,-8.390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chr03	25881573	.	T	C	172199	PASS	AB=0.470626;ABP=26.3555;AC=144;AF=0.774194;AN=186;AO=7901;CIGAR=1X;DP=9583;DPB=9583;DPRA=21.2622;EPP=17081.7;EPPR=3605.61;GTI=7;LEN=1;MEANALT=1.03333;MQM=59.997;MQMR=59.9875;NS=93;NUMALT=1;ODDS=1.15923;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281429;QR=60152;RO=1679;RPL=9;RPP=17081.7;RPPR=3605.61;RPR=7892;RUN=1;SAF=7901;SAP=17159.8;SAR=0;SRF=1679;SRP=3648.91;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:16,19:16:576:19:656:-48.8234,0,-41.6389	1/1:160:0,160:0:0:160:5678:-511.142,-48.1648,0	0/1:123:54,69:54:1924:69:2450:-183.727,0,-136.41	1/1:329:0,329:0:0:329:11769:-1059.07,-99.0389,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:70:36,34:36:1296:34:1207:-87.8632,0,-95.8269	1/1:156:0,156:0:0:156:5575:-501.874,-46.9607,0	1/1:76:0,76:0:0:76:2688:-242.166,-22.8783,0	0/1:109:50,59:50:1788:59:2107:-157.086,0,-128.39	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:67:0,67:0:0:67:2399:-216.166,-20.169,0	1/1:82:0,82:0:0:82:2912:-262.314,-24.6845,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:80:1,79:1:36:79:2819:-250.35,-20.4841,0	0/1:55:27,28:27:963:28:990:-72.8566,0,-70.4293	0/1:46:28,18:28:1000:18:620:-42.2728,0,-76.468	1/1:77:0,77:0:0:77:2734:-246.303,-23.1793,0	0/1:35:18,17:18:639:17:591:-42.9787,0,-47.3022	1/1:280:0,280:0:0:280:9945:-894.996,-84.2884,0	1/1:161:0,160:0:0:160:5693:-512.131,-48.1648,0	0/1:118:78,40:78:2790:40:1419:-92.4851,0,-215.818	1/1:103:0,103:0:0:103:3641:-327.895,-31.0061,0	0/1:92:48,43:48:1728:43:1527:-109.969,0,-128.052	1/1:61:0,61:0:0:61:2172:-195.747,-18.3628,0	0/1:330:195,135:195:6981:135:4812:-333.898,0,-529.012	1/1:194:1,193:1:36:193:6899:-617.38,-54.8015,0	0/1:31:20,11:20:707:11:392:-26.2881,0,-54.6226	1/1:320:0,320:0:0:320:11364:-1022.64,-96.3296,0	1/1:134:4,130:4:144:130:4579:-398.966,-27.0244,0	1/1:110:0,110:0:0:110:3910:-352.095,-33.1133,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:230:0,230:0:0:230:8193:-737.387,-69.2369,0	1/1:179:1,178:1:36:178:6284:-562.062,-50.2861,0	0/1:61:42,19:42:1512:19:680:-43.1663,0,-118.012	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:182:97,85:97:3484:85:3055:-220.391,0,-258.983	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:150:76,74:76:2728:74:2610:-189.993,0,-200.608	0/1:80:39,41:39:1404:41:1467:-108.243,0,-102.577	1/1:85:0,85:0:0:85:3023:-272.301,-25.5876,0	1/1:99:1,98:1:36:98:3490:-310.713,-26.2037,0	1/1:97:0,97:0:0:97:3471:-312.601,-29.1999,0	1/1:214:0,214:0:0:214:7660:-689.436,-64.4204,0	1/1:141:0,141:0:0:141:5001:-450.239,-42.4452,0	1/1:151:0,151:0:0:151:5366:-483.074,-45.4555,0	1/1:222:0,222:0:0:222:7935:-714.175,-66.8287,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:133:61,72:61:2187:72:2562:-190.792,0,-157.058	1/1:35:0,35:0:0:35:1248:-112.624,-10.5361,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:132:41,91:41:1476:91:3238:-251.906,0,-93.4002	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:71:0,71:0:0:71:2525:-227.5,-21.3731,0	0/1:111:45,66:45:1612:66:2360:-179.244,0,-111.954	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:291:0,291:0:0:291:10381:-934.212,-87.5997,0	0/1:171:89,82:89:3192:82:2936:-212.998,0,-236.027	1/1:67:1,66:1:36:66:2348:-207.98,-16.5707,0	1/1:116:0,116:0:0:116:4132:-372.063,-34.9195,0	1/1:220:2,218:2:72:218:7770:-692.496,-59.3899,0	0/1:131:88,43:88:3141:43:1535:-99.0074,0,-243.48	0/1:15:2,13:2:72:13:453:-36.5844,0,-2.32127	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:61:0,61:0:0:61:2177:-196.195,-18.3628,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:72:35,37:35:1256:37:1332:-98.5082,0,-91.6711	0/1:90:55,35:55:1963:35:1243:-85.0812,0,-149.852	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	1/1:185:0,185:0:0:185:6617:-595.61,-55.6906,0	0/1:83:48,35:48:1720:35:1252:-87.9996,0,-130.1	1/1:162:1,161:1:36:161:5715:-510.87,-45.1686,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:165:86,79:86:3084:79:2818:-204.189,0,-228.118	1/1:153:0,152:0:0:152:5431:-488.56,-45.7566,0	1/1:261:1,260:1:36:260:9261:-829.862,-74.9706,0	0/1:124:62,62:62:2224:62:2228:-163.456,0,-163.096	1/1:56:1,55:1:36:55:1980:-174.876,-13.2594,0	0/1:109:61,48:61:2169:48:1698:-120.292,0,-162.663	1/1:142:1,141:1:36:141:5029:-449.158,-39.148,0	0/1:62:40,22:40:1436:22:775:-51.4068,0,-110.874	1/1:75:1,74:1:36:74:2656:-235.687,-18.979,0	1/1:89:0,89:0:0:89:3170:-285.524,-26.7917,0	0/1:27:11,16:11:388:16:560:-42.6009,0,-27.1296	0/1:75:34,41:34:1224:41:1432:-106.596,0,-87.8898	0/1:72:52,20:52:1872:20:711:-42.6415,0,-147.085	1/1:153:0,153:0:0:153:5454:-490.99,-46.0576,0	1/1:110:0,110:0:0:110:3936:-354.432,-33.1133,0
chr03	25881594	.	T	G	27844.6	PASS	AB=0.530864;ABP=28.4782;AC=40;AF=0.212766;AN=188;AO=1655;CIGAR=1X;DP=9527;DPB=9527;DPRA=0.805382;EPP=3596.8;EPPR=17042.6;GTI=4;LEN=1;MEANALT=1.06383;MQM=59.9909;MQMR=59.9943;NS=94;NUMALT=1;ODDS=2.10702;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58822;QR=280639;RO=7863;RPL=1655;RPP=3596.8;RPPR=17033.9;RPR=0;RUN=1;SAF=1655;SAP=3596.8;SAR=0;SRF=7862;SRP=17068.6;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:20,15:20:708:15:523:-36.8624,0,-53.5095	0/0:160:159,0:159:5687:0:0:0,-47.8638,-511.589	0/1:117:64,53:64:2266:53:1876:-133.897,0,-168.981	0/0:327:327,0:327:11660:0:0:0,-98.4368,-1049.27	0/0:56:55,0:55:1967:0:0:0,-16.5566,-176.945	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/1:71:34,37:34:1224:37:1307:-96.5516,0,-89.0939	0/0:151:151,0:151:5387:0:0:0,-45.4555,-484.963	0/0:77:77,0:77:2754:0:0:0,-23.1793,-248.101	0/1:111:61,50:61:2192:50:1796:-128.508,0,-164.131	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.664	0/0:63:63,0:63:2228:0:0:0,-18.9649,-200.782	0/0:85:85,0:85:3017:0:0:0,-25.5875,-271.761	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145	0/1:55:27,28:27:953:28:989:-72.7654,0,-69.5267	0/1:40:16,24:16:552:24:860:-65.6806,0,-37.9617	0/0:79:79,0:79:2802:0:0:0,-23.7814,-252.42	0/1:33:16,17:16:576:17:577:-42.3148,0,-42.241	0/0:279:279,0:279:9970:0:0:0,-83.9874,-897.237	0/0:157:157,0:157:5555:0:0:0,-47.2617,-500.074	0/1:118:40,78:40:1432:78:2781:-215.008,0,-93.6561	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.317	0/1:90:44,46:44:1576:46:1623:-119.266,0,-115.039	0/0:61:61,0:61:2166:0:0:0,-18.3628,-195.206	0/1:325:131,194:131:4666:194:6899:-523.146,0,-322.268	0/0:192:191,1:191:6811:1:36:0,-54.1995,-609.463	0/1:31:11,20:11:396:20:707:-54.6226,0,-26.6508	0/0:324:324,0:324:11578:0:0:0,-97.5337,-1041.83	0/0:130:126,4:126:4501:4:144:0,-25.8203,-391.944	0/0:108:108,0:108:3871:0:0:0,-32.5112,-348.584	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:228:228,0:228:8146:0:0:0,-68.6348,-733.156	0/0:174:173,1:173:6163:1:36:0,-48.7809,-551.041	0/1:59:19,40:19:680:40:1414:-109.795,0,-43.7684	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:186:88,98:88:3155:98:3508:-259.939,0,-228.182	0/0:30:30,0:30:1071:0:0:0,-9.0309,-96.7016	0/1:145:71,74:71:2544:74:2621:-192.485,0,-185.561	0/1:80:41,39:41:1459:39:1383:-100.686,0,-107.523	0/0:88:88,0:88:3127:0:0:0,-26.4906,-281.657	0/0:98:97,1:97:3436:1:36:0,-25.9027,-305.856	0/0:97:97,0:97:3447:0:0:0,-29.1999,-310.442	0/0:214:214,0:214:7665:0:0:0,-64.4204,-689.883	0/0:142:142,0:142:5063:0:0:0,-42.7463,-455.814	0/0:152:152,0:152:5430:0:0:0,-45.7566,-488.829	0/0:219:219,0:219:7828:0:0:0,-65.9256,-704.548	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:132:70,62:70:2508:62:2200:-158.527,0,-186.236	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:133:92,41:92:3272:41:1472:-92.7391,0,-254.662	0/0:32:31,0:31:1077:0:0:0,-9.33193,-96.8768	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/1:108:64,44:64:2279:44:1552:-107.458,0,-172.86	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:291:290,0:290:10387:0:0:0,-87.2987,-934.429	0/1:171:81,90:81:2890:90:3200:-236.746,0,-208.859	0/0:67:67,0:67:2386:0:0:0,-20.169,-214.997	0/0:119:118,1:118:4215:1:36:0,-32.2243,-375.933	0/0:218:216,2:216:7683:2:72:0,-58.7878,-684.669	0/1:130:42,88:42:1508:88:3155:-245.04,0,-96.8807	0/0:15:14,1:14:504:1:36:0,-0.917175,-42.0916	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.548	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:71:33,35:33:1179:35:1221:-89.3623,0,-85.5876	0/1:88:34,54:34:1224:54:1932:-147.666,0,-83.9764	0/0:71:71,0:71:2526:0:0:0,-21.3731,-227.591	0/0:187:187,0:187:6711:0:0:0,-56.2926,-604.063	0/1:82:35,47:35:1240:47:1669:-125.81,0,-87.22	0/0:161:160,1:160:5735:1:36:0,-44.8676,-512.667	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:165:83,82:83:2961:82:2924:-213.724,0,-217.052	0/0:151:151,0:151:5408:0:0:0,-45.4555,-486.85	0/0:260:260,0:260:9276:0:0:0,-78.2678,-834.807	0/1:120:60,60:60:2156:60:2115:-154.495,0,-158.183	0/0:57:56,1:56:2008:1:36:0,-13.5604,-177.395	0/1:108:49,58:49:1743:58:2075:-154.45,0,-124.584	0/0:141:141,0:141:5044:0:0:0,-42.4452,-454.106	0/1:63:22,41:22:784:41:1464:-113.091,0,-51.919	0/0:73:73,0:73:2603:0:0:0,-21.9752,-234.518	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/1:27:16,11:16:572:11:384:-26.7669,0,-43.6856	0/1:74:41,32:41:1411:32:1135:-80.1232,0,-104.945	0/1:76:21,55:21:756:55:1952:-153.076,0,-45.4889	0/0:149:149,0:149:5321:0:0:0,-44.8535,-479.023	0/0:108:108,0:108:3856:0:0:0,-32.5112,-347.234
chr03	25904443	.	C	T	32381	PASS	AB=0.601131;ABP=270.048;AC=40;AF=0.212766;AN=188;AO=1824;CIGAR=1X;DP=7667;DPB=7667;DPRA=0.994537;EPP=3963.78;EPPR=12686.6;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9764;MQMR=59.9707;NS=94;NUMALT=1;ODDS=1.13607;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65313;QR=207641;RO=5841;RPL=0;RPP=3963.78;RPPR=12686.6;RPR=1824;RUN=1;SAF=1824;SAP=3963.78;SAR=0;SRF=5841;SRP=12686.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:10,39:10:360:39:1391:-110.738,0,-17.9938	0/0:54:54,0:54:1920:0:0:0,-16.2556,-173.077	0/1:178:104,74:104:3660:74:2647:-184.893,0,-276.022	0/0:169:169,0:169:6029:0:0:0,-50.8741,-542.715	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.701	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:60:18,42:18:640:42:1496:-116.872,0,-39.8675	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:56:55,1:55:1939:1:36:0,-13.2594,-171.179	0/1:75:24,51:24:860:51:1813:-140.873,0,-55.1446	0/0:61:61,0:61:2160:0:0:0,-18.3628,-194.668	0/0:115:115,0:115:4054:0:0:0,-34.6184,-365.049	0/0:78:78,0:78:2757:0:0:0,-23.4803,-248.372	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:92:92,0:92:3267:0:0:0,-27.6948,-294.252	0/1:64:31,33:31:1103:33:1188:-87.9627,0,-80.3139	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:43:17,26:17:600:26:936:-71.6152,0,-41.3849	0/0:138:138,0:138:4932:0:0:0,-41.5421,-443.714	0/0:93:93,0:93:3303:0:0:0,-27.9958,-297.49	0/1:124:25,99:25:896:99:3548:-282.2,0,-43.6326	0/0:84:83,1:83:2954:1:36:0,-21.6882,-262.493	0/1:39:10,29:10:352:29:1036:-81.8091,0,-20.2762	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.551	0/1:209:85,124:85:3036:124:4439:-336.764,0,-210.555	0/0:158:158,0:158:5610:0:0:0,-47.5627,-505.026	0/1:31:10,21:10:343:21:756:-59.0353,0,-21.8686	0/0:191:191,0:191:6796:0:0:0,-57.4967,-611.714	0/0:140:135,5:135:4794:5:180:0,-25.5921,-415.067	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/1:12:10,2:10:352:2:72:-3.22436,0,-28.4058	0/1:27:14,13:14:500:13:468:-34.3318,0,-37.2084	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:192:192,0:192:6827:0:0:0,-57.7978,-614.503	0/0:83:83,0:83:2951:0:0:0,-24.9855,-265.824	0/1:56:33,23:33:1163:23:828:-57.9864,0,-88.1184	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:141:43,98:43:1536:98:3520:-274.563,0,-96.0879	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:179:71,108:71:2515:108:3861:-293.801,0,-172.718	0/1:66:21,45:21:748:45:1616:-125.862,0,-47.7773	0/0:74:74,0:74:2626:0:0:0,-22.2762,-236.587	0/0:82:82,0:82:2922:0:0:0,-24.6845,-263.214	0/0:91:91,0:91:3211:0:0:0,-27.3937,-289.205	0/0:134:134,0:134:4758:0:0:0,-40.338,-428.381	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	0/0:141:141,0:141:5034:0:0:0,-42.4452,-453.099	0/0:48:47,1:47:1684:1:36:0,-10.8512,-148.249	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:146:69,77:69:2446:77:2764:-205.051,0,-176.444	0/0:45:45,0:45:1595:0:0:0,-13.5463,-143.84	0/1:23:5,18:5:176:18:648:-51.7282,0,-9.26133	0/1:137:70,67:70:2504:67:2400:-175.008,0,-184.371	0/0:38:38,0:38:1346:0:0:0,-11.4391,-121.439	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.133	0/1:142:64,78:64:2272:78:2808:-210.21,0,-161.996	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:180:179,0:179:6366:0:0:0,-53.8844,-572.674	0/1:162:73,89:73:2595:89:3183:-237.927,0,-185.032	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:96:96,0:96:3405:0:0:0,-28.8989,-306.665	0/0:112:111,1:111:3932:1:36:0,-30.1171,-350.473	0/1:143:36,107:36:1292:107:3806:-299.689,0,-73.5365	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.771	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5035	0/1:135:34,101:34:1220:101:3599:-283.477,0,-69.4678	0/1:80:39,41:39:1400:41:1468:-108.334,0,-102.217	0/0:73:73,0:73:2603:0:0:0,-21.9752,-234.514	0/0:140:140,0:140:4999:0:0:0,-42.1442,-450.058	0/1:126:41,85:41:1447:85:3014:-233.559,0,-92.5954	0/0:94:94,0:94:3334:0:0:0,-28.2968,-300.279	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:82:40,42:40:1424:42:1512:-111.69,0,-103.771	0/0:108:108,0:108:3843:0:0:0,-32.5112,-346.068	0/0:116:115,1:115:4089:1:36:0,-31.3212,-364.598	0/1:54:24,30:24:864:30:1080:-81.2576,0,-61.8269	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.348	0/1:47:15,31:15:540:31:1112:-86.2036,0,-34.7482	0/0:125:124,1:124:4386:1:36:0,-34.0305,-391.317	0/1:30:11,19:11:392:19:684:-52.8594,0,-26.5892	0/0:80:80,0:80:2825:0:0:0,-24.0824,-254.481	0/0:91:91,0:91:3239:0:0:0,-27.3937,-291.724	0/1:55:27,28:27:951:28:1004:-74.1146,0,-69.3477	0/1:138:69,69:69:2443:69:2476:-181.549,0,-178.583	0/1:91:25,66:25:870:66:2376:-186.704,0,-51.2208	0/0:131:130,1:130:4582:1:36:0,-35.8367,-408.954	0/0:103:103,0:103:3674:0:0:0,-31.0061,-330.861
chr03	25904452	.	T	A	129144	PASS	AB=0.396477;ABP=283.107;AC=148;AF=0.787234;AN=188;AO=5889;CIGAR=1X;DP=7723;DPB=7723;DPRA=16.5978;EPP=12420;EPPR=3851.93;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.954;MQMR=59.9596;NS=94;NUMALT=1;ODDS=1.01538;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211075;QR=65496;RO=1832;RPL=43;RPP=12420;RPPR=3851.93;RPR=5846;RUN=1;SAF=5889;SAP=12790.8;SAR=0;SRF=1832;SRP=3981.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:40,10:40:1428:10:360:-17.6928,0,-113.766	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:175:72,103:72:2580:103:3668:-277.371,0,-179.769	1/1:169:0,169:0:0:169:6060:-545.502,-50.8741,0	1/1:67:0,67:0:0:67:2393:-215.626,-20.169,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:62:44,18:44:1567:18:648:-39.988,0,-122.43	1/1:78:0,78:0:0:78:2808:-252.959,-23.4803,0	1/1:55:1,54:1:21:54:1936:-172.408,-14.4567,0	0/1:77:53,24:53:1895:24:860:-54.5425,0,-147.648	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:117:0,117:0:0:117:4183:-376.652,-35.2205,0	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:95:0,95:0:0:95:3403:-306.484,-28.5979,0	0/1:64:33,31:33:1175:31:1112:-81.1254,0,-86.791	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:43:26,17:26:912:17:608:-42.1077,0,-69.4488	1/1:139:0,139:0:0:139:5000:-449.827,-41.8432,0	1/1:93:0,93:0:0:93:3344:-301.176,-27.9958,0	0/1:124:99,25:99:3517:25:900:-43.9933,0,-279.412	1/1:87:1,86:1:36:86:3072:-273.108,-22.5913,0	0/1:38:30,8:30:1080:8:288:-14.8283,0,-86.0695	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	0/1:211:125,86:125:4454:86:3084:-214.27,0,-337.513	1/1:156:0,155:0:0:155:5560:-500.163,-46.6597,0	0/1:31:21,10:21:752:10:360:-23.4124,0,-58.6743	1/1:195:0,195:0:0:195:7004:-630.417,-58.7009,0	1/1:142:6,136:6:216:136:4888:-420.279,-22.9557,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:194:0,194:0:0:194:6960:-626.407,-58.3998,0	1/1:86:0,86:0:0:86:3082:-277.579,-25.8886,0	0/1:54:21,33:21:743:33:1184:-90.6127,0,-50.9377	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:140:97,43:97:3461:43:1544:-97.1089,0,-269.557	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:182:108,74:108:3858:74:2644:-183.419,0,-292.627	0/1:67:45,22:45:1603:22:779:-50.2631,0,-124.39	1/1:77:0,77:0:0:77:2748:-247.527,-23.1793,0	1/1:84:0,84:0:0:84:2998:-270.048,-25.2865,0	1/1:94:0,94:0:0:94:3351:-301.806,-28.2968,0	1/1:133:0,133:0:0:133:4772:-429.636,-40.037,0	1/1:62:0,62:0:0:62:2223:-200.334,-18.6639,0	1/1:143:0,143:0:0:143:5107:-459.758,-43.0473,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:146:77,69:77:2763:69:2472:-178.783,0,-204.952	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:23:18,5:18:648:5:176:-9.26133,0,-51.7282	0/1:138:69,69:69:2468:69:2466:-180.651,0,-180.829	1/1:39:0,39:0:0:39:1375:-124.046,-11.7402,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:141:78,63:78:2789:63:2264:-161.577,0,-208.801	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:178:0,178:0:0:178:6392:-575.365,-53.5833,0	0/1:161:88,73:88:3139:73:2624:-187.941,0,-234.27	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:96:0,96:0:0:96:3448:-310.532,-28.8989,0	1/1:115:1,114:1:36:114:4094:-365.044,-31.0202,0	0/1:143:107,36:107:3848:36:1292:-73.5365,0,-303.467	1/1:65:0,65:0:0:65:2340:-210.85,-19.567,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:9:0,9:0:0:9:324:-29.5035,-2.70927,0	0/1:132:99,33:99:3547:33:1188:-67.4926,0,-279.702	0/1:79:41,38:41:1472:38:1360:-98.9192,0,-108.995	1/1:72:0,72:0:0:72:2577:-232.178,-21.6742,0	1/1:140:0,140:0:0:140:5006:-450.684,-42.1442,0	0/1:127:87,40:87:3080:40:1413:-89.2345,0,-239.193	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:81:42,39:42:1508:39:1404:-102.274,0,-111.631	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0	1/1:117:1,116:1:36:116:4149:-369.993,-31.6222,0	0/1:53:29,24:29:1044:24:856:-61.4065,0,-78.3202	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	0/1:47:31,16:31:1116:16:565:-37.0288,0,-86.6033	1/1:125:1,124:1:36:124:4452:-397.251,-34.0305,0	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	1/1:83:0,83:0:0:83:2962:-266.811,-24.9855,0	1/1:96:0,96:0:0:96:3441:-309.901,-28.8989,0	0/1:55:29,26:29:1040:26:936:-68.0028,0,-77.3531	0/1:140:71,68:71:2556:68:2448:-178.371,0,-188.082	0/1:92:67,25:67:2412:25:894:-53.0854,0,-189.641	1/1:132:1,131:1:36:131:4689:-418.57,-36.1377,0	1/1:105:0,105:0:0:105:3757:-338.327,-31.6082,0
chr03	25937531	.	C	A	30904.2	PASS	AB=0.493947;ABP=3.93042;AC=41;AF=0.218085;AN=188;AO=1447;CIGAR=1X;DP=8389;DPB=8389;DPRA=0.892333;EPP=592.968;EPPR=3725.59;GTI=4;LEN=1;MEANALT=1.02174;MQM=59.9634;MQMR=59.9883;NS=94;NUMALT=1;ODDS=2.19738;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51199;QR=246900;RO=6939;RPL=410;RPP=592.968;RPPR=3729.91;RPR=1037;RUN=1;SAF=1447;SAP=3145.13;SAR=0;SRF=6938;SRP=15062.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:41,33:41:1455:33:1154:-81.8883,0,-108.969	0/0:141:141,0:141:5017:0:0:0,-42.4452,-451.678	0/1:83:51,32:51:1816:32:1107:-74.9504,0,-138.736	0/0:207:206,1:206:7333:1:36:0,-58.7149,-656.425	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:86:43,43:43:1515:43:1524:-111.565,0,-110.754	0/0:170:170,0:170:6045:0:0:0,-51.1751,-544.157	0/0:142:141,1:141:5004:1:32:0,-39.5469,-447.309	0/1:108:60,48:60:2131:48:1696:-120.413,0,-159.547	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.79	0/0:66:66,0:66:2335:0:0:0,-19.868,-210.407	0/0:74:74,0:74:2632:0:0:0,-22.2762,-237.125	0/0:69:69,0:69:2445:0:0:0,-20.7711,-220.304	0/0:75:75,0:75:2687:0:0:0,-22.5772,-242.074	0/1:53:29,24:29:1040:24:860:-61.7672,0,-77.9598	0/1:93:54,39:54:1927:39:1400:-98.3034,0,-145.704	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/1:41:15,26:15:531:26:936:-72.2172,0,-35.7797	0/0:188:188,0:188:6681:0:0:0,-56.5936,-601.371	0/0:236:235,0:235:8364:0:0:0,-70.742,-752.411	0/1:52:17,35:17:604:35:1217:-94.1777,0,-39.037	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/1:167:91,76:91:3255:76:2687:-191.802,0,-242.898	0/0:65:65,0:65:2299:0:0:0,-19.5669,-207.171	0/1:169:78,91:78:2770:91:3201:-237.44,0,-198.667	0/0:181:180,1:180:6364:1:36:0,-50.8882,-569.26	0/1:41:28,13:28:1008:13:460:-29.3931,0,-78.6941	0/0:171:170,0:170:6065:0:0:0,-51.1751,-545.593	0/0:78:78,0:78:2767:0:0:0,-23.4803,-249.272	0/0:139:139,0:139:4959:0:0:0,-41.8432,-446.461	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:230:230,0:230:8149:0:0:0,-69.2369,-733.427	0/0:101:101,0:101:3578:0:0:0,-30.404,-322.229	0/1:51:27,24:27:956:24:856:-62.0086,0,-71.0032	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:137:72,65:72:2562:65:2282:-163.951,0,-189.588	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:92:55,37:55:1963:37:1308:-90.3268,0,-149.25	0/1:124:66,58:66:2345:58:2076:-149.783,0,-173.98	0/0:101:101,0:101:3605:0:0:0,-30.404,-324.655	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.443	0/0:104:104,0:104:3694:0:0:0,-31.3071,-332.662	0/0:127:127,0:127:4509:0:0:0,-38.2308,-405.98	0/0:113:111,2:111:3980:2:72:0,-27.1797,-351.553	0/0:120:120,0:120:4277:0:0:0,-36.1236,-385.108	0/0:174:174,0:174:6210:0:0:0,-52.3792,-558.998	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:96:45,51:45:1604:51:1809:-134.193,0,-115.751	0/0:18:17,1:17:600:1:21:0,-3.31859,-52.2292	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:100:51,49:51:1793:49:1720:-124.982,0,-131.547	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:12:8,4:8:279:4:136:-8.96318,0,-21.8352	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/1:105:43,62:43:1523:62:2211:-167.647,0,-105.754	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:144:144,0:144:5080:0:0:0,-43.3483,-457.35	0/1:198:113,85:113:4033:85:3020:-212.429,0,-303.553	0/0:49:48,1:48:1702:1:36:0,-11.1522,-149.866	0/0:75:75,0:75:2661:0:0:0,-22.5772,-239.735	0/0:155:154,1:154:5442:1:36:0,-43.0614,-486.315	0/1:86:39,47:39:1392:47:1664:-124.159,0,-99.6904	0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4193	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/0:109:109,0:109:3894:0:0:0,-32.8123,-350.652	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/1:118:69,49:69:2452:49:1736:-121.003,0,-185.414	0/1:81:37,44:37:1324:44:1552:-115.588,0,-95.0787	0/0:153:153,0:153:5446:0:0:0,-46.0576,-489.49	0/0:113:113,0:113:4023:0:0:0,-34.0164,-362.26	0/1:106:50,56:50:1780:56:1981:-146.654,0,-128.574	0/0:102:99,2:99:3544:2:72:0,-23.9271,-312.332	0/1:20:15,5:15:536:5:176:-10.1644,0,-42.5542	0/1:112:55,57:55:1959:57:2015:-147.908,0,-142.869	0/0:98:98,0:98:3474:0:0:0,-29.5009,-312.873	0/0:181:181,0:181:6442:0:0:0,-54.4864,-579.871	0/1:130:57,73:57:2031:73:2604:-195.475,0,-143.874	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:98:44,54:44:1572:54:1905:-142.224,0,-112.271	0/0:198:198,0:198:7072:0:0:0,-59.6039,-636.54	0/1:43:20,23:20:720:23:824:-61.539,0,-52.1845	0/0:98:98,0:98:3515:0:0:0,-29.5009,-316.559	0/0:73:73,0:73:2595:0:0:0,-21.9752,-233.799	0/1:27:12,15:12:432:15:524:-39.3618,0,-31.0934	0/1:73:37,36:37:1332:36:1276:-93.1679,0,-98.2072	0/1:97:30,67:30:1080:67:2384:-185.618,0,-68.3133	0/0:99:99,0:99:3510:0:0:0,-29.802,-316.112	0/0:106:106,0:106:3769:0:0:0,-31.9092,-339.407
chr03	25937587	.	A	G	24613.7	PASS	AB=0.508225;ABP=4.72486;AC=36;AF=0.195652;AN=184;AO=1498;CIGAR=1X;DP=9109;DPB=9109;DPRA=0.820809;EPP=3255.88;EPPR=16434.7;GTI=2;LEN=1;MEANALT=1;MQM=59.9566;MQMR=59.992;NS=92;NUMALT=1;ODDS=0.853857;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53180;QR=272185;RO=7607;RPL=1498;RPP=3255.88;RPPR=16434.7;RPR=0;RUN=1;SAF=0;SAP=3255.88;SAR=1498;SRF=0;SRP=16521.4;SRR=7607;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:28,50:28:996:50:1776:-136.643,0,-66.4745	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:129:62,67:62:2216:67:2379:-175.535,0,-160.872	0/0:214:212,2:212:7591:2:72:0,-57.5837,-676.391	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.938	0/1:70:38,32:38:1352:32:1136:-81.4768,0,-100.908	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/0:138:138,0:138:4928:0:0:0,-41.5421,-443.669	0/1:85:38,47:38:1360:47:1663:-124.369,0,-97.113	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:130:130,0:130:4650:0:0:0,-39.1339,-418.661	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.484	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:77:43,34:43:1548:34:1208:-85.8468,0,-116.434	0/1:49:24,25:24:864:25:879:-64.6763,0,-63.3321	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:52:30,22:30:1080:22:784:-55.2304,0,-81.8597	0/0:203:203,0:203:7280:0:0:0,-61.1091,-655.25	0/0:198:198,0:198:7083:0:0:0,-59.6039,-637.53	0/1:87:27,60:27:972:60:2144:-167.038,0,-61.6083	0/0:172:172,0:172:6135:0:0:0,-51.7772,-552.252	0/1:109:61,48:61:2184:48:1716:-121.913,0,-164.014	0/0:146:146,0:146:5222:0:0:0,-43.9504,-470.117	0/1:194:117,77:117:4196:77:2743:-188.712,0,-319.421	0/0:287:287,0:287:10258:0:0:0,-86.3956,-923.147	0/1:52:29,23:29:1036:23:811:-57.6564,0,-77.9004	0/0:271:271,0:271:9689:0:0:0,-81.5791,-871.96	0/0:127:121,6:121:4322:6:216:0,-18.4403,-369.365	0/0:114:113,0:113:4040:0:0:0,-34.0164,-363.577	.:.:.:.:.:.:.:.	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:245:245,0:245:8782:0:0:0,-73.7523,-790.365	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/1:62:26,36:26:936:36:1267:-95.6681,0,-65.8956	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:116:68,48:68:2436:48:1724:-120.526,0,-184.576	0/0:35:34,1:34:1216:1:36:0,-6.93777,-106.148	0/1:185:96,89:96:3448:89:3171:-229.924,0,-253.652	0/1:76:29,47:29:1040:47:1662:-126.988,0,-71.0361	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/0:133:131,2:131:4674:2:72:0,-33.2003,-413.982	0/0:153:153,0:153:5464:0:0:0,-46.0576,-491.89	0/0:142:142,0:142:5091:0:0:0,-42.7463,-458.332	0/0:104:103,1:103:3669:1:36:0,-27.7088,-326.815	0/0:105:104,1:104:3706:1:36:0,-28.0099,-330.144	0/0:156:156,0:156:5558:0:0:0,-46.9607,-500.343	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:74:47,27:47:1673:27:964:-64.8006,0,-128.578	0/0:87:87,0:87:3115:0:0:0,-26.1896,-280.576	.:.:.:.:.:.:.:.	0/1:121:68,53:68:2427:53:1896:-134.476,0,-182.261	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.913	0/1:103:51,52:51:1828:52:1826:-133.613,0,-133.795	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:124:124,0:124:4432:0:0:0,-37.3277,-399.052	0/1:159:91,68:91:3252:68:2427:-170.822,0,-245.038	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082	0/0:178:176,2:176:6285:2:72:0,-46.7466,-558.907	0/1:250:93,157:93:3332:157:5611:-429.855,0,-224.84	0/0:61:60,0:60:2147:0:0:0,-18.0618,-193.137	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.405	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:138:80,58:80:2860:58:2062:-144.308,0,-216.096	0/1:66:34,32:34:1220:32:1124:-81.5975,0,-90.2388	0/0:212:212,0:212:7582:0:0:0,-63.8184,-682.419	0/0:112:112,0:112:4004:0:0:0,-33.7154,-360.548	0/1:64:32,32:32:1144:32:1126:-82.3807,0,-84.0036	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:93:47,46:47:1679:46:1640:-119.874,0,-123.401	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.831	0/0:211:211,0:211:7543:0:0:0,-63.5173,-678.911	0/1:69:27,42:27:968:42:1478:-111.685,0,-66.6663	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:60:27,33:27:963:33:1144:-85.202,0,-68.9241	0/0:147:147,0:147:5276:0:0:0,-44.2514,-474.974	0/1:29:11,18:11:396:18:619:-47.302,0,-27.2529	0/0:73:73,0:73:2595:0:0:0,-21.9752,-233.799	0/0:83:81,0:81:2908:0:0:0,-24.3834,-261.595	0/1:46:17,29:17:612:29:1015:-77.8127,0,-41.5661	0/1:94:43,51:43:1539:51:1807:-134.614,0,-110.506	0/1:86:28,58:28:1000:58:2050:-158.882,0,-64.3984	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/0:112:112,0:112:4008:0:0:0,-33.7154,-360.909
chr03	26039411	.	T	C	231062	PASS	AB=0.546527;ABP=87.4734;AC=148;AF=0.787234;AN=188;AO=10758;CIGAR=1X;DP=12833;DPB=12833;DPRA=0;EPP=23329;EPPR=4484.93;GTI=3;LEN=1;MEANALT=1.09574;MQM=59.9943;MQMR=60;NS=94;NUMALT=1;ODDS=8.03178;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=381135;QR=73796;RO=2064;RPL=3;RPP=23337.7;RPPR=4484.93;RPR=10755;RUN=1;SAF=10757;SAP=23355;SAR=1;SRF=2064;SRP=4484.93;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:23,30:23:812:30:1063:-80.0258,0,-57.4463	1/1:167:2,165:2:72:165:5890:-523.375,-43.4353,0	0/1:126:61,64:61:2188:64:2284:-167.833,0,-159.197	1/1:423:1,422:1:36:422:14990:-1345.24,-123.737,0	1/1:75:0,75:0:0:75:2657:-239.376,-22.5773,0	1/1:139:0,139:0:0:139:4952:-445.831,-41.8432,0	0/1:133:52,81:52:1845:81:2879:-219.31,0,-126.291	1/1:292:0,292:0:0:292:10321:-928.814,-87.9008,0	1/1:298:0,297:0:0:297:10495:-944.076,-89.4059,0	0/1:186:51,135:51:1832:135:4762:-372.753,0,-109.169	1/1:107:0,107:0:0:107:3767:-339.232,-32.2102,0	1/1:109:0,109:0:0:109:3876:-349.036,-32.8123,0	1/1:103:0,103:0:0:103:3639:-327.717,-31.0061,0	1/1:121:0,121:0:0:121:4290:-386.279,-36.4246,0	1/1:76:0,76:0:0:76:2686:-241.985,-22.8783,0	0/1:70:40,30:40:1419:30:1046:-73.3763,0,-106.935	0/1:125:63,62:63:2264:62:2202:-160.816,0,-166.394	1/1:73:0,73:0:0:73:2603:-234.518,-21.9752,0	0/1:65:32,33:32:1152:33:1175:-86.49,0,-84.4232	1/1:139:0,139:0:0:139:4965:-446.999,-41.8432,0	1/1:294:0,294:0:0:294:10326:-929.285,-88.5028,0	0/1:50:31,19:31:1108:19:672:-45.7553,0,-84.9795	1/1:171:0,171:0:0:171:6064:-545.866,-51.4761,0	0/1:239:96,143:96:3440:143:5062:-383.783,0,-237.867	1/1:58:0,57:0:0:57:2006:-180.45,-17.1587,0	0/1:474:203,270:203:7258:270:9596:-720.896,0,-510.565	1/1:282:1,279:1:36:279:9907:-887.98,-81.05,0	0/1:54:26,28:26:936:28:996:-73.6993,0,-68.3038	1/1:248:0,248:0:0:248:8775:-789.748,-74.6554,0	1/1:255:18,237:18:640:237:8427:-700.509,-18.8333,0	1/1:263:0,262:0:0:262:9298:-836.434,-78.8699,0	0/1:18:4,14:4:144:14:496:-39.5557,0,-7.89508	0/1:15:9,6:9:320:6:208:-14.5436,0,-24.6269	0/1:13:7,6:7:252:6:207:-15.0535,0,-19.1156	1/1:3:0,3:0:0:3:100:-9.33044,-0.90309,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:267:0,267:0:0:267:9424:-848.133,-80.375,0	0/1:191:83,108:83:2960:108:3804:-285.065,0,-209.137	0/1:101:45,56:45:1612:56:2008:-150.589,0,-114.966	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:208:101,107:101:3587:107:3818:-281.203,0,-260.425	1/1:61:0,61:0:0:61:2156:-194.308,-18.3628,0	0/1:139:73,66:73:2616:66:2327:-167.846,0,-193.844	0/1:116:60,56:60:2145:56:1991:-144.544,0,-158.396	1/1:134:0,134:0:0:134:4743:-427.033,-40.338,0	1/1:174:0,174:0:0:174:6170:-555.406,-52.3792,0	1/1:183:0,183:0:0:183:6487:-583.921,-55.0885,0	1/1:212:0,212:0:0:212:7494:-674.509,-63.8184,0	1/1:108:2,106:2:72:106:3770:-332.663,-25.6745,0	1/1:236:0,236:0:0:236:8370:-753.313,-71.0431,0	1/1:181:1,180:1:36:180:6399:-572.405,-50.8882,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:139:53,85:53:1900:85:3003:-228.6,0,-129.376	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	0/1:19:9,10:9:301:10:348:-25.935,0,-21.6941	0/1:190:74,116:74:2640:116:4136:-315.229,0,-180.652	1/1:90:0,90:0:0:90:3169:-285.435,-27.0927,0	0/1:14:8,6:8:288:6:207:-14.7525,0,-22.053	0/1:36:15,21:15:540:21:752:-57.1692,0,-38.0995	1/1:115:0,115:0:0:115:4062:-365.771,-34.6185,0	0/1:149:78,71:78:2804:71:2532:-183.278,0,-207.746	0/1:11:3,8:3:104:8:288:-22.9561,0,-6.39148	1/1:178:0,178:0:0:178:6288:-566.021,-53.5833,0	0/1:289:119,170:119:4241:170:6017:-454.644,0,-294.872	1/1:124:0,124:0:0:124:4398:-395.996,-37.3277,0	1/1:108:0,108:0:0:108:3835:-345.349,-32.5112,0	1/1:258:1,257:1:36:257:9100:-815.389,-74.0675,0	0/1:96:58,38:58:2080:38:1351:-92.9907,0,-158.571	1/1:38:1,37:1:36:37:1287:-112.529,-7.84087,0	1/1:87:0,87:0:0:87:3054:-275.09,-26.1896,0	1/1:140:0,140:0:0:140:4959:-446.462,-42.1442,0	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	0/1:112:50,62:50:1796:62:2181:-162.841,0,-128.207	0/1:109:49,60:49:1743:60:2136:-159.696,0,-124.341	1/1:374:0,374:0:0:374:13238:-1191.24,-112.585,0	1/1:180:0,180:0:0:180:6369:-573.306,-54.1854,0	0/1:105:56,49:56:2008:49:1741:-125.365,0,-149.385	1/1:233:4,227:4:144:227:8086:-714.449,-56.5841,0	0/1:25:17,8:17:595:8:284:-18.3776,0,-46.3509	0/1:131:55,76:55:1976:76:2685:-202.46,0,-138.68	1/1:103:0,103:0:0:103:3616:-325.651,-31.0061,0	1/1:119:0,119:0:0:119:4222:-380.163,-35.8226,0	0/1:138:61,77:61:2183:77:2731:-204.492,0,-155.193	1/1:76:0,76:0:0:76:2711:-244.234,-22.8783,0	0/1:172:82,89:82:2927:89:3142:-231.172,0,-211.829	1/1:266:0,266:0:0:266:9393:-845.345,-80.074,0	0/1:64:22,42:22:792:42:1496:-115.669,0,-52.3398	1/1:100:0,100:0:0:100:3551:-319.8,-30.103,0	1/1:123:0,123:0:0:123:4332:-390.059,-37.0267,0	0/1:46:22,24:22:792:24:847:-62.7013,0,-57.7583	0/1:161:72,89:72:2580:89:3154:-235.619,0,-183.983	0/1:105:67,38:67:2404:38:1334:-88.7502,0,-185.008	1/1:99:0,99:0:0:99:3510:-316.111,-29.802,0	1/1:153:0,153:0:0:153:5412:-487.215,-46.0576,0
chr03	26107768	.	C	G	46802.4	PASS	AB=0.54321;ABP=63.4362;AC=40;AF=0.212766;AN=188;AO=2041;CIGAR=1X;DP=9640;DPB=9640;DPRA=0.882133;EPP=10.6972;EPPR=30.5114;GTI=0;LEN=1;MEANALT=1.12245;MQM=59.9907;MQMR=59.9938;NS=94;NUMALT=1;ODDS=3.1065;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72218;QR=260593;RO=7588;RPL=2033;RPP=4365.77;RPPR=16083;RPR=8;RUN=1;SAF=970;SAP=13.8634;SAR=1071;SRF=3593;SRP=49.2568;SRR=3995;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:20,17:20:703:17:612:-44.2753,0,-52.4554	0/0:91:91,0:91:3041:0:0:0,-27.3937,-273.919	0/1:197:92,105:92:3229:105:3702:-274.08,0,-231.529	0/0:175:175,0:175:6119:0:0:0,-52.6802,-550.818	0/0:63:62,1:62:2149:1:36:0,-15.3666,-190.076	0/0:54:54,0:54:1854:0:0:0,-16.2556,-167.133	0/1:99:33,65:33:1120:65:2302:-177.58,0,-71.2383	0/0:153:152,1:152:5244:1:36:0,-42.4593,-468.505	0/0:113:112,1:112:3828:1:36:0,-30.4181,-341.123	0/1:92:50,42:50:1693:42:1491:-106.789,0,-124.951	0/0:113:113,0:113:3838:0:0:0,-34.0164,-345.622	0/0:185:181,1:181:6191:1:36:0,-51.5457,-553.718	0/0:143:143,0:143:4847:0:0:0,-43.0473,-436.399	0/0:144:144,0:144:4931:0:0:0,-43.3483,-443.95	0/0:179:179,0:179:6121:0:0:0,-53.8844,-551.01	0/1:133:51,82:51:1714:82:2892:-220.479,0,-114.499	0/1:116:54,62:54:1755:62:2186:-162.086,0,-123.301	0/0:106:106,0:106:3558:0:0:0,-31.9092,-320.436	0/1:92:41,51:41:1392:51:1824:-136.746,0,-97.8726	0/0:124:124,0:124:4280:0:0:0,-37.3277,-385.384	0/0:114:113,1:113:3882:1:36:0,-30.7191,-345.975	0/1:42:17,25:17:597:25:900:-68.6778,0,-41.4129	0/0:69:68,1:68:2313:1:20:0,-18.7711,-206.425	0/1:51:33,18:33:1090:18:635:-42.1244,0,-83.0396	0/0:80:79,0:79:2712:0:0:0,-23.7814,-244.072	0/1:188:89,99:89:3081:99:3506:-259.157,0,-220.925	0/0:176:176,0:176:6124:0:0:0,-52.9813,-551.27	0/1:64:31,33:31:1082:33:1159:-85.3499,0,-78.4213	0/0:172:172,0:172:5915:0:0:0,-51.7772,-532.471	0/0:93:86,7:86:3018:7:248:0,-5.33159,-249.187	0/0:90:90,0:90:3107:0:0:0,-27.0927,-279.857	0/1:8:4,4:4:135:4:144:-10.9054,0,-10.0743	0/1:16:6,10:6:216:10:351:-27.1102,0,-14.974	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6551	0/0:287:287,0:287:9815:0:0:0,-86.3956,-883.333	0/1:70:27,43:27:942:43:1519:-115.93,0,-64.0202	0/1:124:52,72:52:1827:72:2547:-192.15,0,-127.383	0/1:5:2,3:2:57:3:108:-8.57002,0,-3.90816	0/1:144:72,72:72:2510:72:2572:-188.382,0,-182.803	0/0:61:61,0:61:2034:0:0:0,-18.3628,-183.327	0/1:138:53,84:53:1778:84:2975:-226.382,0,-118.693	0/1:177:91,86:91:3090:86:3040:-220.548,0,-225.049	0/0:110:109,0:109:3705:0:0:0,-32.8123,-333.447	0/0:51:51,0:51:1745:0:0:0,-15.3525,-157.327	0/0:91:91,0:91:3111:0:0:0,-27.3937,-280.22	0/0:99:99,0:99:3450:0:0:0,-29.802,-310.714	0/0:82:82,0:82:2887:0:0:0,-24.6845,-260.064	0/0:111:111,0:111:3864:0:0:0,-33.4143,-347.958	0/0:86:86,0:86:2985:0:0:0,-25.8886,-268.882	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:141:59,82:59:2072:82:2927:-221.219,0,-144.303	0/0:34:34,0:34:1194:0:0:0,-10.235,-107.764	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:101:41,60:41:1386:60:2120:-160.663,0,-94.6218	0/0:37:37,0:37:1284:0:0:0,-11.1381,-115.858	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:8:2,6:2:63:6:216:-17.3823,0,-3.57491	0/0:84:84,0:84:2953:0:0:0,-25.2865,-266.003	0/1:173:86,87:86:2948:87:3057:-223.283,0,-213.477	0/1:11:9,2:9:309:2:72:-3.52539,0,-24.8294	0/0:96:96,0:96:3298:0:0:0,-28.8989,-297.041	0/1:190:80,110:80:2721:110:3866:-290.943,0,-187.92	0/0:56:56,0:56:1925:0:0:0,-16.8577,-173.52	0/0:57:57,0:57:1970:0:0:0,-17.1587,-177.572	0/0:112:109,3:109:3682:3:104:0,-24.0126,-321.882	0/1:114:31,82:31:1042:82:2899:-226.77,0,-59.7029	0/0:97:97,0:97:3428:0:0:0,-29.1999,-308.735	0/0:57:57,0:57:1973:0:0:0,-17.1587,-177.841	0/0:148:148,0:148:5081:0:0:0,-44.5524,-457.445	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:69:37,31:37:1279:31:1091:-77.6691,0,-94.5775	0/1:78:38,40:38:1337:40:1418:-104.435,0,-97.1476	0/0:181:181,0:181:6237:0:0:0,-54.4864,-561.383	0/0:121:121,0:121:4130:0:0:0,-36.4246,-371.886	0/1:125:61,63:61:2107:63:2249:-164.985,0,-152.208	0/0:95:94,1:94:3290:1:36:0,-24.9996,-292.721	0/1:17:10,7:10:319:7:229:-15.812,0,-23.9019	0/1:101:38,63:38:1297:63:2243:-171.729,0,-86.62	0/0:124:124,0:124:4305:0:0:0,-37.3277,-387.631	0/0:133:133,0:133:4647:0:0:0,-40.037,-418.397	0/1:145:78,67:78:2602:67:2363:-169.28,0,-190.776	0/0:165:165,0:165:5682:0:0:0,-49.6699,-511.513	0/1:186:99,87:99:3306:87:3062:-219.811,0,-241.773	0/0:232:232,0:232:7784:0:0:0,-69.839,-700.631	0/1:51:30,21:30:986:21:736:-51.2099,0,-73.6844	0/0:125:125,0:125:4288:0:0:0,-37.6287,-386.104	0/0:153:153,0:153:5235:0:0:0,-46.0576,-471.298	0/1:115:50,65:50:1701:65:2330:-175.341,0,-118.752	0/1:161:85,76:85:2978:76:2683:-193.248,0,-219.785	0/1:135:40,95:40:1391:95:3352:-261.257,0,-84.8444	0/0:108:108,0:108:3762:0:0:0,-32.5112,-338.783	0/0:250:249,0:249:8547:0:0:0,-74.9565,-768.938
chr03	26126765	.	T	C	18810.2	PASS	AB=0.528851;ABP=18.1713;AC=38;AF=0.202128;AN=188;AO=1115;CIGAR=1X;DP=6188;DPB=6188;DPRA=0.801266;EPP=2424.2;EPPR=11012.4;GTI=1;LEN=1;MEANALT=1.02564;MQM=59.9668;MQMR=59.986;NS=94;NUMALT=1;ODDS=7.32632;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39746;QR=181385;RO=5070;RPL=1115;RPP=2424.2;RPPR=11012.4;RPR=0;RUN=1;SAF=0;SAP=2424.2;SAR=1115;SRF=0;SRP=11012.4;SRR=5070;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:24,26:24:849:26:928:-68.7868,0,-61.6763	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:121:68,53:68:2429:53:1877:-132.782,0,-182.439	0/0:239:239,0:239:8592:0:0:0,-71.9462,-773.269	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/1:93:35,58:35:1237:58:2065:-158.123,0,-83.6365	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.794	0/0:84:82,2:82:2902:2:72:0,-18.4498,-254.577	0/1:62:28,34:28:996:34:1205:-90.09,0,-71.291	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:110:110,0:110:3941:0:0:0,-33.1133,-354.88	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:54:20,34:20:705:34:1220:-93.8512,0,-47.5172	0/1:32:17,15:17:608:15:540:-39.3036,0,-45.4191	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:23:9,14:9:324:14:489:-37.4152,0,-22.5822	0/0:150:150,0:150:5354:0:0:0,-45.1545,-481.991	0/0:108:108,0:108:3845:0:0:0,-32.5112,-346.246	0/1:59:22,37:22:792:37:1320:-101.341,0,-53.8449	0/0:91:91,0:91:3241:0:0:0,-27.3937,-291.911	0/1:47:21,26:21:756:26:932:-70.0505,0,-54.2188	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/1:176:89,87:89:3181:87:3113:-227.415,0,-233.531	0/0:121:121,0:121:4329:0:0:0,-36.4246,-389.784	0/1:23:5,18:5:180:18:640:-51.0056,0,-9.62837	0/0:194:194,0:194:6957:0:0:0,-58.3998,-626.192	0/0:58:57,1:57:2033:1:36:0,-13.8615,-179.642	0/0:116:116,0:116:4153:0:0:0,-34.9195,-373.951	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:153:153,0:153:5485:0:0:0,-46.0576,-493.773	0/1:44:15,29:15:525:29:1028:-79.5877,0,-34.3327	0/1:43:28,15:28:1004:15:525:-34.6338,0,-77.7316	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:104:58,45:58:2069:45:1620:-114.724,0,-155.113	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:127:83,44:83:2976:44:1553:-101.829,0,-229.842	0/1:49:21,28:21:756:28:989:-74.5715,0,-53.6168	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.032	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:138:138,0:138:4945:0:0:0,-41.5421,-445.197	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:58:25,33:25:900:33:1169:-88.0555,0,-63.8613	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:77:44,33:44:1565:33:1188:-83.9431,0,-117.96	0/0:47:46,0:46:1641:0:0:0,-13.8474,-147.617	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:78:33,45:33:1188:45:1612:-121.889,0,-83.7483	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/1:97:38,59:38:1356:59:2097:-159.798,0,-93.1406	0/0:78:78,0:78:2778:0:0:0,-23.4803,-250.258	0/0:52:52,0:52:1832:0:0:0,-15.6536,-165.156	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.448	0/1:71:15,56:15:525:56:1997:-158.626,0,-26.2049	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:65:36,29:36:1296:29:1038:-74.167,0,-97.377	0/1:86:40,46:40:1440:46:1648:-122.72,0,-103.992	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.92	0/0:126:126,0:126:4483:0:0:0,-37.9298,-403.636	0/1:97:47,50:47:1680:50:1788:-132.003,0,-122.287	0/0:106:106,0:106:3786:0:0:0,-31.9092,-340.935	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:60:22,38:22:792:38:1343:-103.107,0,-53.5439	0/0:97:96,0:96:3436:0:0:0,-28.8989,-309.242	0/0:128:128,0:128:4596:0:0:0,-38.5318,-413.803	0/1:60:26,34:26:913:34:1216:-91.6848,0,-64.4222	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:44:24,20:24:849:20:701:-50.1664,0,-63.4825	0/0:88:88,0:88:3168:0:0:0,-26.4906,-285.343	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:51:28,23:28:993:23:824:-59.1308,0,-74.33	0/1:59:22,37:22:792:37:1317:-101.069,0,-53.8449	0/0:106:106,0:106:3774:0:0:0,-31.9092,-339.857	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507
chr03	26130825	.	G	A	21500.6	PASS	AB=0.462231;ABP=38.7681;AC=40;AF=0.212766;AN=188;AO=1346;CIGAR=1X;DP=8267;DPB=8267;DPRA=0.785714;EPP=2925.81;EPPR=15020.9;GTI=5;LEN=1;MEANALT=1.04444;MQM=59.9703;MQMR=59.9889;NS=94;NUMALT=1;ODDS=0.576357;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48085;QR=247032;RO=6916;RPL=1346;RPP=2925.81;RPPR=15020.9;RPR=0;RUN=1;SAF=0;SAP=2925.81;SAR=1346;SRF=0;SRP=15020.9;SRR=6916;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:93:91,2:91:3233:2:72:0,-21.1591,-284.355	0/1:105:55,50:55:1972:50:1792:-129.954,0,-146.147	0/0:203:203,0:203:7241:0:0:0,-61.1091,-651.745	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:126:51,75:51:1828:75:2620:-198.114,0,-126.871	0/0:110:110,0:110:3939:0:0:0,-33.1133,-354.701	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:77:37,40:37:1317:40:1421:-105.006,0,-95.6505	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:108:108,0:108:3855:0:0:0,-32.5112,-347.146	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:48:28,20:28:1008:20:708:-49.5962,0,-76.5869	0/1:64:31,33:31:1116:33:1188:-87.9627,0,-81.4858	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:74:48,25:48:1712:25:884:-57.6204,0,-132.109	0/0:170:170,0:170:6057:0:0:0,-51.1751,-545.235	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/1:107:41,66:41:1476:66:2357:-180.177,0,-100.926	0/0:53:53,0:53:1877:0:0:0,-15.9546,-169.207	0/1:71:39,32:39:1400:32:1144:-81.8964,0,-104.926	0/0:66:66,0:66:2326:0:0:0,-19.868,-209.597	0/1:217:116,100:116:4144:100:3588:-257.783,0,-307.802	0/0:133:133,0:133:4749:0:0:0,-40.037,-427.568	0/1:43:25,18:25:900:18:644:-45.3463,0,-68.3767	0/0:265:265,0:265:9453:0:0:0,-79.7729,-850.733	0/0:66:65,1:65:2319:1:36:0,-16.2697,-205.372	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/1:16:10,6:10:360:6:212:-14.6083,0,-27.9278	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:206:206,0:206:7344:0:0:0,-62.0122,-661.01	0/1:150:66,84:66:2337:84:3020:-226.847,0,-165.434	0/1:63:40,23:40:1440:23:828:-55.8792,0,-110.933	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:120:60,60:60:2144:60:2148:-157.464,0,-157.104	0/0:59:59,0:59:2096:0:0:0,-17.7608,-188.907	0/1:77:43,34:43:1525:34:1220:-86.9275,0,-114.362	0/1:75:40,35:40:1440:35:1256:-90.768,0,-107.32	0/0:141:141,0:141:5068:0:0:0,-42.4452,-456.262	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.259	0/0:114:114,0:114:4065:0:0:0,-34.3174,-365.967	0/0:237:237,0:237:8472:0:0:0,-71.3441,-762.377	0/0:168:168,0:168:6004:0:0:0,-50.573,-540.467	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.753	0/0:154:154,0:154:5512:0:0:0,-46.3586,-496.206	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:108:63,45:63:2248:45:1620:-113.579,0,-170.072	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/1:150:103,47:103:3668:47:1657:-104.261,0,-285.171	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:130:65,65:65:2324:65:2332:-171.006,0,-170.286	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:326:325,0:325:11576:0:0:0,-97.8347,-1041.46	0/1:161:95,66:95:3373:66:2355:-163.743,0,-255.321	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:154:154,0:154:5504:0:0:0,-46.3586,-495.487	0/0:214:211,3:211:7544:3:108:0,-54.3452,-668.927	0/1:72:27,45:27:949:45:1616:-124.056,0,-64.0486	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:56:56,0:56:1981:0:0:0,-16.8577,-178.563	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:60:34,26:34:1208:26:936:-66.4977,0,-90.9643	0/1:86:74,12:74:2641:12:428:-12.9702,0,-212.047	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/0:140:138,2:138:4928:2:72:0,-35.3075,-436.835	0/1:81:36,45:36:1284:45:1593:-119.275,0,-91.48	0/0:66:62,4:62:2232:4:140:0,-6.9234,-188.199	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/1:72:48,24:48:1716:24:864:-56.4084,0,-133.051	0/0:98:97,0:97:3476:0:0:0,-29.1999,-312.692	0/0:242:241,0:241:8578:0:0:0,-72.5482,-771.72	0/1:108:60,48:60:2138:48:1705:-121.224,0,-160.175	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:74:52,22:52:1868:22:788:-48.9686,0,-146.123	0/0:147:147,0:147:5267:0:0:0,-44.2514,-474.165	0/1:44:18,26:18:648:26:928:-70.5929,0,-45.4066	0/0:93:93,0:93:3322:0:0:0,-27.9958,-299.197	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/1:37:16,21:16:576:21:752:-56.8681,0,-41.0369	0/1:143:71,72:71:2539:72:2573:-188.725,0,-185.713	0/1:58:19,39:19:680:39:1404:-109.2,0,-44.0694	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.324	0/0:151:151,0:151:5391:0:0:0,-45.4555,-485.322
chr03	26130828	.	G	A	147864	PASS	AB=0.533426;ABP=31.0273;AC=148;AF=0.787234;AN=188;AO=6840;CIGAR=1X;DP=8202;DPB=8202;DPRA=0;EPP=14855.9;EPPR=2954.04;GTI=4;LEN=1;MEANALT=1.03191;MQM=59.9946;MQMR=59.9706;NS=94;NUMALT=1;ODDS=1.52358;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243539;QR=48418;RO=1359;RPL=6840;RPP=14855.9;RPPR=2954.04;RPR=0;RUN=1;SAF=0;SAP=14855.9;SAR=6840;SRF=0;SRP=2954.04;SRR=1359;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:93:2,91:2:72:91:3233:-284.355,-21.1591,0	0/1:103:49,54:49:1752:54:1936:-143.51,0,-126.958	1/1:200:0,200:0:0:200:7141:-642.748,-60.206,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:127:74,53:74:2628:53:1877:-130.976,0,-198.538	1/1:106:0,106:0:0:106:3808:-342.916,-31.9092,0	1/1:25:1,24:1:36:24:849:-73.1296,-3.92748,0	0/1:80:42,38:42:1500:38:1352:-97.898,0,-111.212	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	1/1:79:0,79:0:0:79:2784:-250.798,-23.7814,0	1/1:107:0,107:0:0:107:3818:-343.818,-32.2102,0	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	0/1:50:20,30:20:708:30:1080:-82.4618,0,-48.9941	0/1:66:34,32:34:1224:32:1137:-82.769,0,-90.5991	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:74:26,48:26:924:48:1720:-132.809,0,-61.2014	1/1:168:0,168:0:0:168:5947:-535.341,-50.573,0	1/1:75:0,75:0:0:75:2686:-241.985,-22.5773,0	0/1:110:69,41:69:2452:41:1449:-97.5906,0,-187.822	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	0/1:70:31,39:31:1108:39:1404:-105.587,0,-78.9589	1/1:67:0,67:0:0:67:2373:-213.827,-20.169,0	0/1:220:105,115:105:3744:115:4112:-304.039,0,-270.935	1/1:133:0,133:0:0:133:4707:-423.79,-40.037,0	0/1:41:16,25:16:559:25:896:-68.6181,0,-38.2954	1/1:259:0,259:0:0:259:9186:-826.719,-77.9668,0	1/1:67:1,66:1:36:66:2341:-207.35,-16.5707,0	1/1:111:0,111:0:0:111:3976:-358.03,-33.4143,0	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/1:8:3,5:3:108:5:165:-12.7654,0,-7.66693	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:6:0,6:0:0:6:208:-19.0585,-1.80618,0	1/1:201:0,201:0:0:201:7171:-645.447,-60.507,0	0/1:145:83,62:83:2939:62:2216:-156.055,0,-221.068	0/1:65:24,41:24:837:41:1472:-113.209,0,-56.0785	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/1:121:60,61:60:2132:61:2169:-159.05,0,-155.724	1/1:59:0,59:0:0:59:2103:-189.539,-17.7608,0	0/1:75:34,41:34:1224:41:1453:-108.487,0,-87.8898	0/1:77:36,41:36:1287:41:1464:-108.877,0,-92.9535	1/1:142:0,142:0:0:142:5080:-457.344,-42.7463,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:108:0,108:0:0:108:3862:-347.767,-32.5112,0	1/1:236:0,236:0:0:236:8379:-754.013,-71.0431,0	1/1:167:0,167:0:0:167:5950:-535.609,-50.272,0	1/1:133:0,133:0:0:133:4745:-427.209,-40.037,0	1/1:147:0,146:0:0:146:5197:-467.66,-43.9504,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:108:45,63:45:1612:63:2251:-170.341,0,-112.859	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:144:46,97:46:1644:97:3435:-265.957,0,-104.842	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	1/1:43:0,43:0:0:43:1529:-137.901,-12.9443,0	0/1:127:63,64:63:2264:64:2296:-168.67,0,-165.792	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:315:0,315:0:0:315:11144:-1002.86,-94.8245,0	0/1:163:65,98:65:2312:98:3428:-259.665,0,-159.273	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:153:0,153:0:0:153:5333:-480.11,-46.0576,0	1/1:212:3,209:3:104:209:7433:-659.318,-54.1156,0	0/1:71:45,26:45:1612:26:921:-61.8321,0,-123.997	1/1:24:0,24:0:0:24:858:-77.5416,-7.22472,0	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	1/1:72:0,72:0:0:72:2559:-230.56,-21.6742,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:58:25,33:25:892:33:1176:-88.688,0,-63.1399	0/1:82:12,70:12:432:70:2478:-198.587,0,-14.5367	1/1:99:0,99:0:0:99:3556:-320.247,-29.802,0	1/1:140:0,140:0:0:140:5001:-450.237,-42.1442,0	0/1:81:45,36:45:1585:36:1273:-90.4875,0,-118.555	1/1:68:4,64:4:144:64:2296:-193.587,-7.15642,0	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/1:71:24,47:24:848:47:1682:-130.294,0,-55.2665	1/1:98:1,97:1:36:97:3456:-307.653,-25.9027,0	1/1:233:0,233:0:0:233:8253:-742.788,-70.14,0	0/1:108:50,58:50:1796:58:2084:-155.319,0,-129.411	1/1:71:0,71:0:0:71:2529:-227.861,-21.3731,0	0/1:76:23,53:23:816:53:1908:-149.119,0,-50.8834	1/1:149:1,148:1:36:148:5284:-472.097,-41.2552,0	0/1:43:25,18:25:888:18:644:-45.3463,0,-67.2947	1/1:93:0,92:0:0:92:3300:-296.859,-27.6948,0	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	0/1:38:22,16:22:788:16:576:-40.7358,0,-59.8057	0/1:145:75,70:75:2668:70:2490:-180.703,0,-196.347	0/1:58:39,19:39:1387:19:672:-43.3471,0,-107.668	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:148:0,148:0:0:148:5270:-474.437,-44.5524,0
chr03	26139000	.	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chr03	26147586	.	T	G	826.101	PASS	AB=0.341326;ABP=158.061;AC=28;AF=0.148936;AN=188;AO=257;CIGAR=1X;DP=4217;DPB=4217;DPRA=0.768593;EPP=561.079;EPPR=8550;GTI=15;LEN=1;MEANALT=1;MQM=26.0778;MQMR=42.6356;NS=94;NUMALT=1;ODDS=1.03329;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=9145;QR=141885;RO=3960;RPL=0;RPP=561.079;RPPR=8550;RPR=257;RUN=1;SAF=0;SAP=561.079;SAR=257;SRF=0;SRP=8602.04;SRR=3960;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:12,2:12:432:2:72:-0.647123,0,-33.4517	0/0:28:28,0:28:993:0:0:0,-8.42884,-87.1558	0/1:29:23,6:23:828:6:216:-5.34302,0,-64.1984	0/0:33:33,0:33:1188:0:0:0,-9.93399,-104.287	0/0:22:22,0:22:792:0:0:0,-6.62266,-69.9477	0/0:17:17,0:17:608:0:0:0,-5.11751,-53.9027	0/1:27:21,6:21:756:6:216:-5.94508,0,-56.6826	0/0:73:73,0:73:2616:0:0:0,-21.9752,-227.871	0/0:46:46,0:46:1644:0:0:0,-13.8474,-142.805	0/1:21:15,6:15:540:6:212:-7.7001,0,-41.5641	0/0:49:49,0:49:1756:0:0:0,-14.7505,-153.583	0/0:18:18,0:18:648:0:0:0,-5.41854,-57.3576	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.8723	0/0:19:19,0:19:684:0:0:0,-5.71957,-57.5076	0/0:15:15,0:15:540:0:0:0,-4.51545,-47.3143	0/1:17:10,7:10:360:7:243:-11.0108,0,-26.9653	0/1:14:3,11:3:104:11:387:-21.1798,0,-5.31383	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.0412	0/1:22:15,7:15:540:7:243:-9.55912,0,-41.1424	0/0:55:55,0:55:1968:0:0:0,-16.5566,-172.582	0/0:53:53,0:53:1908:0:0:0,-15.9546,-167.142	0/1:29:18,11:18:648:11:396:-16.8572,0,-48.6626	0/0:33:33,0:33:1184:0:0:0,-9.93399,-104.152	0/1:30:21,9:21:752:9:315:-11.3271,0,-57.5478	0/0:27:27,0:27:968:0:0:0,-8.12781,-83.5309	0/1:69:47,22:47:1661:22:779:-29.7373,0,-122.404	0/0:76:76,0:76:2728:0:0:0,-22.8783,-237.44	0/1:4:2,2:2:59:2:72:-3.65742,0,-4.35915	0/0:76:76,0:76:2728:0:0:0,-22.8783,-239.534	0/0:27:26,1:26:927:1:36:0,-5.5691,-78.0754	0/0:51:51,0:51:1832:0:0:0,-15.3525,-161.796	0/0:207:206,1:206:7365:1:36:0,-59.7545,-643.837	0/0:67:64,3:64:2296:3:104:0,-13.0567,-193.501	0/0:156:156,0:156:5584:0:0:0,-46.9607,-488.614	0/0:181:181,0:181:6500:0:0:0,-54.4864,-569.64	0/0:84:84,0:84:3020:0:0:0,-25.2865,-264.011	0/0:54:54,0:54:1932:0:0:0,-16.2556,-169.728	0/1:50:32,18:32:1152:18:648:-27.3414,0,-85.638	0/0:31:29,2:29:1040:2:72:0,-4.47039,-87.0689	0/0:68:68,0:68:2427:0:0:0,-20.47,-210.879	0/1:12:10,2:10:356:2:72:-1.24918,0,-28.046	0/0:29:29,0:29:1035:0:0:0,-8.72987,-90.7396	0/1:33:20,13:20:720:13:464:-20.04,0,-53.8662	0/1:9:5,4:5:180:4:144:-6.75794,0,-13.1218	0/0:10:10,0:10:356:0:0:0,-3.0103,-31.4688	0/0:16:16,0:16:572:0:0:0,-4.81648,-50.3132	0/0:33:33,0:33:1180:0:0:0,-9.93399,-103.931	0/0:42:42,0:42:1496:0:0:0,-12.6433,-128.69	0/0:39:39,0:39:1396:0:0:0,-11.7402,-122.955	0/0:42:42,0:42:1508:0:0:0,-12.6433,-131.078	0/0:47:47,0:47:1680:0:0:0,-14.1484,-145.97	0/0:146:146,0:146:5217:0:0:0,-43.9504,-457.082	0/1:44:37,7:37:1332:7:248:-3.07938,0,-103.998	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.5443	0/0:106:106,0:106:3799:0:0:0,-31.9092,-331.938	0/1:16:13,3:13:468:3:108:-2.3479,0,-36.7314	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.3186	0/0:101:101,0:101:3612:0:0:0,-30.404,-314.662	0/0:220:215,5:215:7707:5:180:0,-54.4565,-658.754	0/0:21:21,0:21:756:0:0:0,-6.32163,-66.3004	0/1:28:13,15:13:468:15:531:-26.1772,0,-33.1191	0/0:110:110,0:110:3929:0:0:0,-33.1133,-345.714	0/0:61:61,0:61:2192:0:0:0,-18.3628,-190.941	0/1:35:23,12:23:828:12:432:-17.3539,0,-62.6505	0/0:28:28,0:28:1004:0:0:0,-8.42884,-88.7014	0/0:33:33,0:33:1180:0:0:0,-9.93399,-102.903	0/0:62:61,1:61:2188:1:36:0,-16.1052,-189.701	0/1:38:16,22:16:572:22:788:-39.9396,0,-38.8253	0/0:22:22,0:22:792:0:0:0,-6.62266,-68.0497	0/0:23:23,0:23:824:0:0:0,-6.92369,-73.0564	0/0:35:35,0:35:1260:0:0:0,-10.536,-111.305	0/0:147:147,0:147:5265:0:0:0,-44.2514,-461.115	0/1:38:31,7:31:1116:7:248:-4.88556,0,-86.4215	0/1:14:9,5:9:324:5:180:-7.55563,0,-24.6578	0/0:49:49,0:49:1756:0:0:0,-14.7505,-152.875	0/0:45:45,0:45:1612:0:0:0,-13.5463,-142.396	0/1:27:17,10:17:612:10:356:-15.1056,0,-46.0355	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.0546	0/0:147:147,0:147:5260:0:0:0,-44.2514,-458.438	0/1:19:11,8:11:396:8:284:-12.9081,0,-29.4905	0/0:15:15,0:15:540:0:0:0,-4.51545,-47.1138	0/0:107:107,0:107:3836:0:0:0,-32.2102,-336.169	0/1:30:18,12:18:644:12:424:-18.5894,0,-47.1694	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.2803	0/0:11:10,1:10:360:1:36:0,-0.752623,-29.5242	0/0:35:35,0:35:1256:0:0:0,-10.536,-110.986	0/1:12:10,2:10:356:2:72:-1.24918,0,-27.3644	0/0:15:15,0:15:540:0:0:0,-4.51545,-47.2232	0/0:20:20,0:20:720:0:0:0,-6.0206,-63.7303	0/0:28:27,1:27:972:1:36:0,-5.87013,-82.8657	0/1:14:12,2:12:432:2:72:-0.647123,0,-33.9645	0/1:14:3,11:3:108:11:387:-21.1798,0,-5.6444	0/0:20:20,0:20:712:0:0:0,-6.0206,-62.7802	0/0:12:12,0:12:413:0:0:0,-3.61236,-36.7641
chr03	26204356	.	C	T	18644	PASS	AB=0.492361;ABP=4.17139;AC=40;AF=0.212766;AN=188;AO=1133;CIGAR=1X;DP=5703;DPB=5703;DPRA=0.878044;EPP=2463.29;EPPR=9924.47;GTI=1;LEN=1;MEANALT=1.02326;MQM=53.9779;MQMR=59.6988;NS=94;NUMALT=1;ODDS=0.170313;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40556;QR=162745;RO=4569;RPL=1133;RPP=2463.29;RPPR=9924.47;RPR=0;RUN=1;SAF=1133;SAP=2463.29;SAR=0;SRF=4569;SRP=9924.47;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:13,21:13:464:21:747:-56.9459,0,-31.8625	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.517	0/1:68:40,28:40:1432:28:1008:-70.3319,0,-108.61	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.523	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:62:28,34:28:995:34:1224:-91.6328,0,-71.2002	0/0:43:43,0:43:1514:0:0:0,-12.9443,-136.541	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6613	0/1:85:41,44:41:1472:44:1571:-115.904,0,-107.186	0/0:83:83,0:83:2929:0:0:0,-24.9855,-263.437	0/0:88:88,0:88:3107:0:0:0,-26.4906,-279.824	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.933	0/0:118:118,0:118:4212:0:0:0,-35.5215,-379.251	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.414	0/1:68:41,27:41:1460:27:951:-65.3075,0,-111.224	0/1:96:43,53:43:1525:53:1896:-141.538,0,-108.626	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.865	0/1:25:11,14:11:381:14:504:-37.8781,0,-27.0949	0/0:49:48,1:48:1711:1:36:0,-11.1548,-150.673	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.105	0/1:40:16,24:16:576:24:864:-66.0181,0,-40.1338	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.39	0/1:78:40,38:40:1440:38:1355:-98.5287,0,-106.404	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.893	0/1:196:92,104:92:3282:104:3728:-274.82,0,-236.596	0/0:70:70,0:70:2479:0:0:0,-21.0721,-223.29	0/1:27:19,8:19:680:8:288:-18.0843,0,-53.3967	0/0:77:77,0:77:2742:0:0:0,-23.1793,-247.02	0/0:68:68,0:68:2423:0:0:0,-20.47,-217.884	0/0:61:61,0:61:2166:0:0:0,-18.3628,-195.199	0/1:5:1,4:1:36:4:144:-11.7896,0,-2.09312	0/1:8:4,4:4:144:4:144:-10.7582,0,-10.9054	0/1:3:2,1:2:72:1:36:-2.68614,0,-5.93363	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:174:174,0:174:6132:0:0:0,-52.3792,-551.945	0/1:100:59,41:59:2105:41:1472:-102.29,0,-159.476	0/1:59:32,27:32:1152:27:972:-69.6286,0,-86.0228	0/1:3:1,2:1:36:2:72:-5.92394,0,-2.69518	0/1:53:30,23:30:1072:23:813:-57.4251,0,-80.8379	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.387	0/1:85:39,46:39:1400:46:1656:-122.861,0,-100.703	0/1:99:52,47:52:1841:47:1679:-121.397,0,-136.159	0/0:72:72,0:72:2574:0:0:0,-21.6742,-231.895	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.807	0/0:48:47,1:47:1679:1:36:0,-11.0618,-148.001	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.75	0/0:74:74,0:74:2607:0:0:0,-22.2762,-234.87	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.411	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.727	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:86:50,36:50:1777:36:1296:-90.7558,0,-134.322	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:12:10,2:10:356:2:72:-3.20717,0,-28.7607	0/1:50:28,22:28:1004:22:784:-55.715,0,-75.5748	0/0:38:35,3:35:1260:3:108:0,-1.37124,-103.635	0/1:3:2,1:2:72:1:36:-2.69418,0,-5.93363	0/1:13:8,5:8:288:5:180:-12.634,0,-22.354	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.445	0/1:128:74,54:74:2625:54:1931:-135.324,0,-197.957	0/1:3:2,1:2:72:1:36:-2.69259,0,-5.93363	0/0:107:107,0:107:3819:0:0:0,-32.2102,-343.879	0/1:85:45,40:45:1594:40:1440:-104.146,0,-117.998	0/0:59:59,0:59:2088:0:0:0,-17.7608,-188.183	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3187	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/1:53:14,39:14:504:39:1400:-110.248,0,-29.7435	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/0:40:40,0:40:1415:0:0:0,-12.0412,-127.613	0/0:121:121,0:121:4304:0:0:0,-36.4246,-387.53	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:48:27,21:27:955:21:748:-52.586,0,-71.625	0/1:43:15,28:15:527:28:1008:-77.8152,0,-34.6366	0/0:83:83,0:83:2940:0:0:0,-24.9855,-264.819	0/0:56:56,0:56:1978:0:0:0,-16.8577,-178.251	0/1:41:24,17:24:855:17:612:-42.9198,0,-64.9279	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.343	0/1:14:7,7:7:252:7:248:-18.3889,0,-18.8063	0/1:61:31,30:31:1116:30:1080:-78.9908,0,-82.3843	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.825	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.467	0/1:108:51,57:51:1827:57:2044:-151.227,0,-132.197	0/0:90:90,0:90:3220:0:0:0,-27.0927,-289.966	0/1:67:32,35:32:1148:35:1252:-92.686,0,-83.4539	0/0:167:167,0:167:5967:0:0:0,-50.272,-537.125	0/1:48:24,24:24:851:24:860:-63.081,0,-62.46	0/0:75:75,0:75:2657:0:0:0,-22.5772,-239.303	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.295	0/1:58:29,29:29:1035:29:1021:-74.5266,0,-75.9987	0/1:111:59,51:59:2104:51:1823:-130.392,0,-156.073	0/1:65:26,39:26:923:39:1381:-104.562,0,-63.8081	0/0:36:36,0:36:1270:0:0:0,-10.8371,-114.592	0/0:112:112,0:112:3983:0:0:0,-33.7154,-358.657
chr03	26204366	.	TGTC	CGTC,CGTT	117094	PASS	AB=0.501975,0.494515;ABP=3.08748,3.60581;AC=148,40;AF=0.787234,0.212766;AN=188;AO=4474,1132;CIGAR=1X3M,1X2M1X;DP=5636;DPB=5638;DPRA=0,0.888615;EPP=9718.18,2461.12;EPPR=13.8677;GTI=2;LEN=1,4;MEANALT=1.7234,2.16279;MQM=59.6994,53.9602;MQMR=60;NS=94;NUMALT=2;ODDS=0.084819;PAIRED=0,0;PAIREDR=0;PAO=4,4;PQA=139.5,139.5;PQR=0;PRO=0;QA=155448,39387;QR=178;RO=5;RPL=4474,1132;RPP=9718.18,2461.12;RPPR=13.8677;RPR=0,0;RUN=1,1;SAF=4474,1132;SAP=9718.18,2461.12;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,14,21:0:0:14,21:489,736:-99.672,-59.8964,-55.682,-40.1245,0,-33.8028	1/1:54:0,54,0:0:0:54,0:1865,0:-168.116,-16.2556,0,-168.116,-16.2556,-168.116	1/2:69:0,39,30:0:0:39,30:1368,1043:-196.169,-84.9331,-73.193,-111.584,0,-102.553	1/1:76:0,76,0:0:0:76,0:2653,0:-239.011,-22.8783,0,-239.011,-22.8783,-239.011	1/1:26:0,26,0:0:0:26,0:911,0:-82.305,-7.82678,0,-82.305,-7.82678,-82.305	1/1:26:0,26,0:0:0:26,0:915,0:-82.6656,-7.82678,0,-82.6656,-7.82678,-82.6656	1/2:60:0,26,34:0:0:26,34:911,1190:-171.189,-97.0603,-89.2335,-74.4782,0,-64.2432	1/1:39:0,39,0:0:0:39,0:1362,0:-122.863,-11.7402,0,-122.863,-11.7402,-122.863	1/1:31:0,31,0:0:0:31,0:1058,0:-95.506,-9.33193,0,-95.506,-9.33193,-95.506	1/2:84:0,41,43:0:0:41,43:1439,1484:-237.844,-120.732,-108.39,-117.46,0,-104.515	1/1:84:0,84,0:0:0:84,0:2887,0:-259.947,-25.2865,0,-259.947,-25.2865,-259.947	1/1:85:0,85,0:0:0:85,0:2922,0:-263.188,-25.5876,0,-263.188,-25.5876,-263.188	1/1:73:0,73,0:0:0:73,0:2529,0:-227.694,-21.9752,0,-227.694,-21.9752,-227.694	1/1:116:0,115,0:0:0:115,0:3916,0:-352.277,-34.6185,0,-352.277,-34.6185,-352.277	1/1:78:0,77,0:0:0:77,0:2691,0:-242.062,-23.1793,0,-242.062,-23.1793,-242.062	1/2:68:0,41,27:0:0:41,27:1443,923:-192.61,-75.137,-62.7948,-117.818,0,-109.69	1/2:95:0,44,51:0:0:44,51:1536,1755:-267.438,-142.525,-129.279,-125.259,0,-109.907	1/1:71:1,70,0:1:36:70,0:2434,0:-215.691,-17.7749,0,-215.992,-21.0721,-218.93	1/2:25:0,11,14:0:0:11,14:383,497:-71.7044,-40.5626,-37.2512,-31.4919,0,-27.2775	1/1:48:0,47,1:0:0:47,1:1652,36:-148.6,-14.1484,0,-145.664,-10.8538,-145.363	1/1:47:0,47,0:0:0:47,0:1628,0:-146.776,-14.1484,0,-146.776,-14.1484,-146.776	1/2:41:0,16,25:0:0:16,25:554,858:-115.011,-69.9871,-65.1706,-45.3684,0,-37.8427	1/1:37:0,37,0:0:0:37,0:1303,0:-117.54,-11.1381,0,-117.54,-11.1381,-117.54	1/2:77:0,40,37:0:0:40,37:1404,1261:-216.724,-102.467,-90.4257,-114.602,0,-103.464	1/1:39:0,38,0:0:0:38,0:1321,0:-118.865,-11.4391,0,-118.865,-11.4391,-118.865	1/2:196:0,91,104:0:0:91,104:3192,3623:-553.558,-293.795,-266.401,-259.753,0,-228.446	1/1:68:0,68,0:0:0:68,0:2366,0:-213.143,-20.47,0,-213.143,-20.47,-213.143	1/2:25:0,16,9:0:0:16,9:564,314:-71.6996,-25.7843,-20.9678,-46.2128,0,-43.5035	1/1:74:0,74,0:0:0:74,0:2551,0:-229.837,-22.2762,0,-229.837,-22.2762,-229.837	1/1:69:0,69,0:0:0:69,0:2436,0:-219.357,-20.7711,0,-219.357,-20.7711,-219.357	1/1:60:0,60,0:0:0:60,0:2107,0:-189.89,-18.0618,0,-189.89,-18.0618,-189.89	1/2:6:0,1,5:0:0:1,5:36,166:-16.6594,-13.7172,-13.4162,-3.29724,0,-1.79209	1/2:7:0,3,4:0:0:3,4:104,129:-19.0474,-10.5822,-9.6791,-8.79971,0,-7.59559	1/2:3:0,2,1:0:0:2,1:72,36:-9.16364,-3.2882,-2.68614,-6.23466,0,-5.93363	1/1:6:0,6,0:0:0:6,0:189,0:-17.3199,-1.80618,0,-17.3199,-1.80618,-17.3199	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:171:0,169,0:0:0:169,0:5790,0:-520.865,-50.8741,0,-520.865,-50.8741,-520.865	1/2:102:0,59,43:0:0:59,43:2039,1507:-288.341,-122.673,-104.912,-166.016,0,-153.071	1/2:60:0,33,27:0:0:33,27:1142,955:-170.357,-77.7552,-67.8212,-92.9505,0,-84.8227	1/2:3:0,1,2:0:0:1,2:36,72:-9.16256,-6.22497,-5.92394,-3.29724,0,-2.69518	1/2:53:0,30,23:0:0:30,23:1063,805:-152.345,-65.7462,-56.7153,-86.9499,0,-80.0262	1/1:50:2,47,0:2:71:47,0:1635,0:-140.714,-8.29335,0,-141.316,-14.1484,-147.101	1/2:86:0,40,45:0:0:40,45:1404,1584:-242.428,-128.172,-116.131,-114.251,0,-100.705	1/2:98:0,53,45:0:0:53,45:1821,1573:-276.069,-128.21,-112.255,-148.206,0,-134.66	1/1:70:0,69,0:0:0:69,0:2396,0:-215.502,-20.7711,0,-215.502,-20.7711,-215.502	1/1:50:0,50,0:0:0:50,0:1771,0:-159.67,-15.0515,0,-159.67,-15.0515,-159.67	1/1:47:0,46,1:0:0:46,1:1583,36:-142.415,-13.8474,0,-139.667,-10.7608,-139.366	1/1:102:0,101,0:0:0:101,0:3531,0:-317.668,-30.404,0,-317.668,-30.404,-317.668	1/1:69:0,69,0:0:0:69,0:2381,0:-214.539,-20.7711,0,-214.539,-20.7711,-214.539	1/1:40:0,40,0:0:0:40,0:1378,0:-124.308,-12.0412,0,-124.308,-12.0412,-124.308	1/1:108:0,108,0:0:0:108,0:3790,0:-341.233,-32.5112,0,-341.233,-32.5112,-341.233	1/1:3:0,3,0:0:0:3,0:95,0:-8.86421,-0.90309,0,-8.86421,-0.90309,-8.86421	1/2:85:0,48,36:0:0:48,36:1694,1280:-241.97,-104.029,-89.5796,-137.936,0,-127.098	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:12:0,10,2:0:0:10,2:343,72:-34.0504,-6.21747,-3.20717,-28.1892,0,-27.5872	1/2:48:0,24,22:0:0:24,22:839,765:-130.328,-62.079,-54.8542,-68.2391,0,-61.6165	1/1:40:0,37,3:0:0:37,3:1275,106:-114.681,-11.1381,0,-106.053,-2.15848,-105.15	1/2:3:0,2,1:0:0:2,1:53,35:-7.30753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chr03	26204372	.	C	T	94393.8	PASS	AB=0.502003;ABP=3.08858;AC=148;AF=0.787234;AN=188;AO=4451;CIGAR=1X;DP=5578;DPB=5578;DPRA=0;EPP=9668.23;EPPR=2443.75;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.6976;MQMR=54.016;NS=94;NUMALT=1;ODDS=0.660788;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157728;QR=39699;RO=1124;RPL=4451;RPP=9668.23;RPPR=2443.75;RPR=0;RUN=1;SAF=4451;SAP=9668.23;SAR=0;SRF=1124;SRP=2443.75;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:21,14:21:747:14:496:-34.4382,0,-56.64	1/1:53:1,52:1:36:52:1856:-163.713,-12.3563,0	0/1:69:29,40:29:1013:40:1432:-108.304,0,-70.4963	1/1:74:0,74:0:0:74:2635:-237.39,-22.2762,0	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	1/1:25:0,25:0:0:25:876:-79.1551,-7.52575,0	0/1:57:32,25:32:1121:25:900:-64.1623,0,-83.8813	1/1:38:0,38:0:0:38:1332:-120.169,-11.4391,0	1/1:31:0,31:0:0:31:1089:-98.301,-9.33193,0	0/1:85:44,41:44:1567:41:1459:-106.013,0,-115.544	1/1:80:0,80:0:0:80:2802:-251.842,-24.0824,0	1/1:86:0,86:0:0:86:3028:-272.717,-25.8886,0	1/1:74:0,74:0:0:74:2627:-236.079,-22.2762,0	1/1:118:0,118:0:0:118:4170:-375.48,-35.5215,0	1/1:77:0,77:0:0:77:2744:-247.189,-23.1793,0	0/1:64:27,37:27:918:37:1303:-98.3023,0,-63.544	0/1:93:49,44:49:1715:44:1563:-112.941,0,-126.267	1/1:71:1,70:1:36:70:2477:-219.546,-17.7749,0	0/1:24:14,10:14:496:10:351:-24.702,0,-37.5602	1/1:48:1,47:1:36:47:1656:-145.723,-10.8538,0	1/1:46:0,46:0:0:46:1616:-145.705,-13.8474,0	0/1:41:25,16:25:891:16:572:-39.4712,0,-68.1417	1/1:37:0,37:0:0:37:1319:-119.005,-11.1381,0	0/1:76:35,40:35:1206:40:1428:-105.91,0,-85.7758	1/1:37:0,37:0:0:37:1319:-119.007,-11.1381,0	0/1:194:102,90:102:3633:90:3194:-229.64,0,-268.712	1/1:70:0,70:0:0:70:2484:-223.78,-21.0721,0	0/1:26:9,17:9:311:17:608:-47.2206,0,-20.4486	1/1:78:0,78:0:0:78:2775:-249.988,-23.4803,0	1/1:69:0,69:0:0:69:2415:-217.368,-20.7711,0	1/1:63:0,63:0:0:63:2202:-198.439,-18.9649,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.5948	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.7582	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.68614	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:166:0,166:0:0:166:5884:-529.638,-49.971,0	0/1:96:43,53:43:1531:53:1891:-141.43,0,-108.8	0/1:60:27,33:27:955:33:1180:-88.2397,0,-67.8114	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.92394	0/1:55:24,31:24:833:31:1082:-81.1306,0,-58.6041	1/1:49:0,49:0:0:49:1760:-158.67,-14.7505,0	0/1:84:45,39:45:1588:39:1360:-97.3989,0,-117.087	0/1:94:43,51:43:1535:51:1781:-132.265,0,-109.962	1/1:69:0,69:0:0:69:2465:-222.102,-20.7711,0	1/1:51:0,51:0:0:51:1820:-164.079,-15.3525,0	1/1:45:1,44:1:36:44:1572:-138.383,-10.1588,0	1/1:100:0,100:0:0:100:3543:-319.067,-30.103,0	1/1:71:0,71:0:0:71:2503:-225.517,-21.3731,0	1/1:40:0,40:0:0:40:1388:-125.211,-12.0412,0	1/1:111:0,111:0:0:111:3958:-356.354,-33.4143,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:85:36,49:36:1279:49:1740:-131.297,0,-89.5422	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.80923	0/1:51:23,28:23:824:28:989:-73.962,0,-59.006	1/1:39:3,36:3:108:36:1267:-104.258,-1.67227,0	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29582	0/1:13:5,8:5:171:8:284:-21.99,0,-11.8082	1/1:47:0,47:0:0:47:1668:-150.403,-14.1484,0	0/1:128:56,72:56:1972:72:2543:-190.582,0,-138.933	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69259	1/1:108:0,108:0:0:108:3850:-346.611,-32.5112,0	0/1:82:38,44:38:1342:44:1566:-115.916,0,-96.2436	1/1:59:1,58:1:36:58:2076:-183.508,-14.1625,0	1/1:25:0,25:0:0:25:883:-79.7857,-7.52575,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:54:41,13:41:1476:13:468:-26.204,0,-116.778	1/1:36:0,36:0:0:36:1275:-115.053,-10.8371,0	1/1:34:0,34:0:0:34:1184:-106.844,-10.235,0	1/1:117:0,117:0:0:117:4145:-373.228,-35.2205,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:46:22,24:22:764:24:856:-63.4264,0,-55.006	0/1:43:29,14:29:1028:14:480:-30.509,0,-79.6211	1/1:82:0,82:0:0:82:2891:-260.409,-24.6845,0	1/1:55:0,55:0:0:55:1951:-175.824,-16.5567,0	0/1:40:16,24:16:572:24:834:-63.3344,0,-39.6338	1/1:62:0,62:0:0:62:2192:-197.457,-18.6639,0	0/1:13:6,7:6:212:7:248:-18.7425,0,-15.4643	0/1:60:29,31:29:1008:31:1107:-81.8778,0,-72.8311	1/1:59:0,59:0:0:59:2100:-189.247,-17.7608,0	1/1:77:0,77:0:0:77:2718:-244.856,-23.1793,0	0/1:105:57,48:57:2008:48:1691:-120.865,0,-148.97	1/1:90:0,90:0:0:90:3220:-289.967,-27.0927,0	0/1:65:34,31:34:1188:31:1104:-80.1013,0,-87.5784	1/1:158:0,158:0:0:158:5651:-508.701,-47.5627,0	0/1:44:23,21:23:816:21:744:-54.039,0,-60.3429	1/1:71:0,71:0:0:71:2512:-226.303,-21.3731,0	1/1:74:0,74:0:0:74:2656:-239.253,-22.2762,0	0/1:57:27,30:27:964:30:1051:-77.7345,0,-69.709	0/1:109:51,58:51:1799:58:2035:-150.519,0,-128.92	0/1:63:38,25:38:1356:25:865:-59.1891,0,-102.845	1/1:34:0,34:0:0:34:1187:-107.126,-10.235,0	1/1:110:0,110:0:0:110:3891:-350.384,-33.1133,0
chr03	26204445	.	TC	TG	158626	PASS	AB=0.440287;ABP=128.007;AC=148;AF=0.787234;AN=188;AO=7780;CIGAR=1M1X;DP=10064;DPB=10064.5;DPRA=0;EPP=16897.1;EPPR=4932.25;GTI=0;LEN=1;MEANALT=1.10638;MQM=59.608;MQMR=59.8815;NS=94;NUMALT=1;ODDS=1.11179;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=0;PRO=0;QA=268799;QR=79850;RO=2270;RPL=1;RPP=16888.4;RPPR=4932.25;RPR=7779;RUN=1;SAF=1;SAP=16888.4;SAR=7779;SRF=0;SRP=4932.25;SRR=2270;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:44,37:44:1550:37:1285:-91.5569,0,-115.408	1/1:52:0,52:0:0:52:1794:-161.707,-15.6536,0	0/1:164:98,66:98:3475:66:2286:-156.599,0,-263.596	1/1:195:0,194:0:0:194:6677:-600.606,-58.3998,0	1/1:64:4,60:4:142:60:2047:-171.361,-6.13671,0	1/1:54:1,53:1:36:53:1870:-164.971,-12.6573,0	0/1:112:57,55:57:1983:55:1914:-138.811,0,-145.025	1/1:149:1,148:1:36:148:5157:-460.574,-41.2552,0	1/1:62:0,62:0:0:62:2118:-190.844,-18.6639,0	0/1:107:57,50:57:2029:50:1713:-122.181,0,-150.661	1/1:64:0,64:0:0:64:2211:-199.211,-19.2659,0	1/1:85:0,85:0:0:85:2909:-261.761,-25.5876,0	1/1:99:0,99:0:0:99:3403:-306.472,-29.802,0	1/1:74:0,74:0:0:74:2504:-225.605,-22.2762,0	1/1:81:0,81:0:0:81:2836:-255.442,-24.3834,0	0/1:61:33,28:33:1164:28:946:-67.0764,0,-86.7033	0/1:34:16,18:16:549:18:614:-45.3434,0,-39.497	1/1:62:0,62:0:0:62:2087:-188.072,-18.6639,0	0/1:51:22,29:22:790:29:965:-71.7898,0,-56.0728	1/1:141:0,141:0:0:141:4848:-436.205,-42.4452,0	1/1:206:1,203:1:25:203:7040:-631.093,-59.1786,0	0/1:161:127,34:127:4450:34:1191:-59.0176,0,-352.209	1/1:118:1,117:1:36:117:4041:-360.205,-31.9233,0	0/1:67:35,32:35:1250:32:1083:-77.5956,0,-92.6365	1/1:31:0,31:0:0:31:1084:-97.8561,-9.33193,0	0/1:367:195,171:195:6808:171:5939:-424.046,0,-501.83	1/1:202:0,202:0:0:202:7068:-636.037,-60.8081,0	0/1:45:22,23:22:786:23:789:-57.7713,0,-57.5183	1/1:189:0,189:0:0:189:6541:-588.745,-56.8947,0	1/1:100:2,98:2:72:98:3355:-295.181,-23.2663,0	1/1:142:0,142:0:0:142:4893:-440.455,-42.7463,0	0/1:14:7,7:7:252:7:243:-17.9931,0,-18.8063	0/1:9:4,5:4:144:5:180:-13.8365,0,-10.6043	0/1:13:2,11:2:72:11:342:-27.1662,0,-2.92333	1/1:9:0,9:0:0:9:316:-28.7706,-2.70927,0	1/1:23:0,23:0:0:23:820:-74.0947,-6.92369,0	1/1:214:0,214:0:0:214:7368:-663.123,-64.4204,0	0/1:185:109,76:109:3821:76:2632:-181.422,0,-288.387	0/1:58:33,25:33:1141:25:875:-61.59,0,-85.5335	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1315	0/1:197:95,102:95:3327:102:3555:-260.704,0,-240.347	1/1:100:0,100:0:0:100:3423:-308.276,-30.103,0	0/1:193:113,79:113:3981:79:2700:-185.164,0,-300.324	0/1:109:53,56:53:1877:56:1907:-139.078,0,-136.34	1/1:75:1,74:1:34:74:2558:-227.052,-19.1783,0	1/1:193:0,193:0:0:193:6602:-594.232,-58.0988,0	1/1:84:0,84:0:0:84:2940:-264.629,-25.2865,0	1/1:194:1,193:1:23:193:6720:-602.571,-56.0999,0	1/1:130:0,130:0:0:130:4473:-402.729,-39.1339,0	1/1:121:0,121:0:0:121:4236:-381.407,-36.4246,0	1/1:148:1,147:1:25:147:5126:-458.895,-42.0526,0	1/1:20:0,20:0:0:20:694:-62.7742,-6.0206,0	0/1:139:84,55:84:2969:55:1913:-130.575,0,-225.602	1/1:69:0,69:0:0:69:2407:-216.861,-20.7711,0	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.2912	0/1:135:70,64:70:2475:64:2211:-158.632,0,-182.393	1/1:48:1,47:1:25:47:1630:-144.486,-11.9496,0	0/1:10:4,6:4:139:6:212:-16.4145,0,-9.84191	0/1:18:3,15:3:108:15:519:-41.5985,0,-4.65663	1/1:78:1,77:1:36:77:2657:-235.776,-19.8821,0	0/1:129:61,68:61:2134:68:2352:-173.094,0,-153.487	0/1:10:1,9:1:36:9:315:-25.6707,0,-0.587975	1/1:161:0,161:0:0:161:5631:-506.7,-48.4658,0	0/1:212:103,109:103:3589:109:3771:-275.656,0,-259.238	1/1:82:0,82:0:0:82:2817:-253.761,-24.6845,0	1/1:70:0,69:0:0:69:2417:-217.413,-20.7711,0	1/1:357:3,354:3:108:354:12220:-1089.52,-97.3925,0	0/1:183:127,54:127:4511:54:1880:-114.654,0,-351.353	1/1:42:0,42:0:0:42:1436:-129.52,-12.6433,0	1/1:64:0,64:0:0:64:2221:-200.152,-19.2659,0	1/1:202:0,202:0:0:202:6988:-628.742,-60.8081,0	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	0/1:193:126,67:126:4467:67:2318:-150.566,0,-344.104	0/1:127:60,67:60:2112:67:2346:-172.952,0,-152.117	1/1:176:0,176:0:0:176:6086:-547.782,-52.9813,0	1/1:146:0,146:0:0:146:5079:-456.374,-43.9504,0	0/1:100:56,44:56:1988:44:1506:-105.686,0,-148.863	1/1:98:0,98:0:0:98:3422:-308.181,-29.5009,0	0/1:17:4,13:4:142:13:439:-34.7159,0,-8.0117	0/1:144:79,65:79:2798:65:2202:-155.078,0,-208.712	1/1:108:0,108:0:0:108:3721:-335.064,-32.5112,0	1/1:175:0,175:0:0:175:6139:-552.546,-52.6803,0	0/1:39:25,14:25:889:14:476:-31.4155,0,-68.5826	1/1:82:1,81:1:36:81:2793:-247.975,-21.0862,0	0/1:55:32,23:32:1099:23:767:-52.7818,0,-82.6564	1/1:157:1,156:1:34:156:5352:-478.364,-43.8628,0	0/1:41:23,18:23:789:18:618:-43.5893,0,-58.9806	1/1:60:0,60:0:0:60:2042:-184.023,-18.0618,0	1/1:84:0,84:0:0:84:2854:-257.071,-25.2865,0	0/1:52:24,25:24:846:25:830:-59.8935,0,-61.3541	0/1:88:41,47:41:1427:47:1598:-117.538,0,-102.233	0/1:292:186,104:186:6537:104:3519:-229.251,0,-500.755	1/1:145:1,144:1:34:144:4953:-442.508,-40.2504,0	1/1:118:0,118:0:0:118:4120:-370.981,-35.5215,0
chr03	26204540	.	C	T	31871	PASS	AB=0.389195;ABP=409.642;AC=31;AF=0.164894;AN=188;AO=1509;CIGAR=1X;DP=11789;DPB=11789;DPRA=1.12317;EPP=2787.33;EPPR=18877.6;GTI=0;LEN=1;MEANALT=1.06977;MQM=56.7097;MQMR=57.4328;NS=94;NUMALT=1;ODDS=26.8278;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53817;QR=362011;RO=10274;RPL=683;RPP=32.4367;RPPR=5181.76;RPR=826;RUN=1;SAF=742;SAP=3.90968;SAR=767;SRF=3074;SRP=3601.11;SRR=7200;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:22,28:22:780:28:1008:-75.8949,0,-55.4306	0/0:68:68,0:68:2409:0:0:0,-20.47,-216.974	0/1:67:33,34:33:1167:34:1209:-88.5154,0,-85.0921	0/0:108:108,0:108:3827:0:0:0,-32.5112,-344.519	0/0:27:26,1:26:908:1:36:0,-4.52953,-78.4302	0/0:55:55,0:55:1946:0:0:0,-16.5566,-175.38	0/1:88:38,50:38:1348:50:1796:-135.306,0,-95.0813	0/0:107:107,0:107:3805:0:0:0,-32.2102,-342.439	0/0:96:96,0:96:3380:0:0:0,-28.8989,-304.209	0/1:68:30,38:30:1059:38:1364:-102.553,0,-75.1483	0/0:505:505,0:505:17649:0:0:0,-152.02,-1587.04	0/0:175:175,0:175:6111:0:0:0,-52.6802,-548.745	0/0:189:189,0:189:6698:0:0:0,-56.8947,-602.163	0/0:161:159,2:159:5469:2:57:0,-43.0525,-486.633	0/0:127:126,0:126:4418:0:0:0,-37.9298,-396.831	0/1:125:56,69:56:1983:69:2472:-184.877,0,-140.967	0/1:120:59,61:59:2102:61:2160:-158.255,0,-152.808	0/0:105:105,0:105:3725:0:0:0,-31.6081,-335.253	0/1:197:148,48:148:5159:48:1705:-94.1737,0,-404.003	0/0:66:66,0:66:2346:0:0:0,-19.868,-211.341	0/0:91:91,0:91:3239:0:0:0,-27.3937,-291.5	0/1:24:9,15:9:320:15:527:-40.5327,0,-21.9176	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.502	0/1:77:56,21:56:1987:21:748:-44.4487,0,-155.845	0/0:46:46,0:46:1622:0:0:0,-13.8474,-146.218	0/1:132:65,67:65:2290:67:2386:-175.13,0,-166.623	0/0:118:118,0:118:4163:0:0:0,-35.5215,-374.474	0/1:61:23,38:23:808:38:1359:-103.889,0,-54.6671	0/0:82:82,0:82:2900:0:0:0,-24.6845,-261.179	0/0:50:50,0:50:1764:0:0:0,-15.0515,-158.953	0/0:63:63,0:63:2232:0:0:0,-18.9649,-200.718	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.332	0/0:118:111,7:111:3932:7:248:0,-13.0126,-330.123	0/0:69:69,0:69:2425:0:0:0,-20.7711,-217.525	0/0:444:444,0:444:15708:0:0:0,-133.657,-1408.04	0/0:388:388,0:388:13757:0:0:0,-116.8,-1233.38	0/0:268:268,0:268:9471:0:0:0,-80.676,-852.275	0/1:41:24,17:24:860:17:612:-43.0076,0,-65.3703	0/1:232:176,56:176:6165:56:2007:-110.481,0,-483.933	0/0:65:64,1:64:2255:1:32:0,-16.3697,-199.782	0/1:91:46,45:46:1624:45:1594:-116.153,0,-118.857	0/0:209:209,0:209:7341:0:0:0,-62.9153,-660.127	0/1:97:53,44:53:1875:44:1563:-111.611,0,-139.795	0/1:144:65,79:65:2278:79:2828:-211.258,0,-161.874	0/0:120:120,0:120:4215:0:0:0,-36.1236,-379.359	0/0:54:54,0:54:1890:0:0:0,-16.2556,-170.358	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.676	0/0:68:68,0:68:2394:0:0:0,-20.47,-215.552	0/0:25:25,0:25:870:0:0:0,-7.52575,-78.5555	0/0:75:75,0:75:2632:0:0:0,-22.5772,-237.026	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.597	0/0:241:240,1:240:8487:1:36:0,-68.9997,-759.454	0/1:59:38,20:38:1360:20:718:-46.7369,0,-104.829	0/0:34:34,0:34:1192:0:0:0,-10.235,-107.582	0/0:83:81,2:81:2863:2:72:0,-18.1574,-250.543	0/1:60:24,36:24:847:36:1284:-97.6701,0,-57.8263	0/0:46:46,0:46:1615:0:0:0,-13.8474,-145.495	0/0:72:71,1:71:2500:1:36:0,-18.0759,-221.396	0/0:57:55,2:55:1952:2:72:0,-10.3255,-169.033	0/0:71:70,0:70:2455:0:0:0,-21.0721,-220.734	0/1:173:95,78:95:3332:78:2761:-196.365,0,-247.854	0/0:86:84,2:84:2964:2:72:0,-19.0543,-259.95	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.707	0/1:93:50,43:50:1753:43:1531:-110.053,0,-129.914	0/0:46:46,0:46:1627:0:0:0,-13.8474,-146.622	0/0:52:52,0:52:1838:0:0:0,-15.6536,-165.633	0/0:101:101,0:101:3580:0:0:0,-30.404,-322.249	0/1:71:23,48:23:819:48:1716:-132.99,0,-52.6058	0/0:755:754,1:754:26354:1:36:0,-223.684,-2361.86	0/0:68:68,0:68:2417:0:0:0,-20.47,-217.544	0/0:117:117,0:117:4068:0:0:0,-35.2205,-365.963	0/0:244:244,0:244:8670:0:0:0,-73.4513,-779.553	0/1:44:19,25:19:659:25:888:-66.634,0,-46.3541	0/1:61:24,37:24:840:37:1319:-100.109,0,-57.3758	0/0:105:105,0:105:3690:0:0:0,-31.6081,-331.599	0/0:83:83,0:83:2953:0:0:0,-24.9855,-265.991	0/1:88:46,42:46:1619:42:1491:-107.831,0,-119.463	0/0:92:91,1:91:3227:1:36:0,-24.0965,-286.852	0/0:164:160,4:160:5639:4:144:0,-36.072,-493.18	0/1:67:36,31:36:1270:31:1108:-79.7686,0,-94.4119	0/0:80:80,0:80:2844:0:0:0,-24.0824,-256.123	0/0:95:94,0:94:3300:0:0:0,-28.2968,-296.71	0/1:134:58,76:58:2044:76:2717:-204.348,0,-143.821	0/0:147:147,0:147:5229:0:0:0,-44.2514,-469.381	0/1:142:65,77:65:2320:77:2764:-206.18,0,-166.221	0/0:235:235,0:235:8256:0:0:0,-70.742,-742.696	0/1:61:26,35:26:928:35:1260:-95.2679,0,-65.4453	0/0:110:110,0:110:3862:0:0:0,-33.1133,-347.554	0/0:131:131,0:131:4632:0:0:0,-39.4349,-416.709	0/1:468:411,56:411:14402:56:1992:-38.0387,0,-1152.63	0/1:547:475,72:475:16720:72:2567:-66.1045,0,-1337.15	0/1:131:33,98:33:1184:98:3486:-274.352,0,-67.3815	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:215:215,0:215:7592:0:0:0,-64.7214,-683.152
chr03	26321815	.	C	A	78759	PASS	AB=0.50424;ABP=3.24969;AC=144;AF=0.782609;AN=184;AO=3627;CIGAR=1X;DP=4394;DPB=4394;DPRA=16.0842;EPP=7852.9;EPPR=1664.19;GTI=3;LEN=1;MEANALT=1.02198;MQM=58.7651;MQMR=59.9438;NS=92;NUMALT=1;ODDS=0.576673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129470;QR=27379;RO=765;RPL=3;RPP=7852.9;RPPR=1664.19;RPR=3624;RUN=1;SAF=0;SAP=7878.94;SAR=3627;SRF=0;SRP=1664.19;SRR=765;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:13,15:13:449:15:540:-40.4249,0,-32.3068	1/1:69:0,69:0:0:69:2467:-222.046,-20.7711,0	0/1:76:38,38:38:1360:38:1368:-100.437,0,-99.8223	1/1:135:0,135:0:0:135:4848:-436.312,-40.6391,0	1/1:36:0,36:0:0:36:1296:-116.938,-10.8371,0	1/1:20:0,20:0:0:20:716:-64.7501,-6.0206,0	0/1:64:31,33:31:1116:33:1168:-86.1045,0,-81.4858	1/1:79:0,79:0:0:79:2840:-255.704,-23.7814,0	1/1:52:0,52:0:0:52:1868:-167.79,-15.6536,0	0/1:35:17,18:17:612:18:648:-48.0588,0,-44.8774	1/1:6:0,6:0:0:6:203:-18.6012,-1.80618,0	1/1:44:0,44:0:0:44:1576:-141.637,-13.2453,0	1/1:33:0,33:0:0:33:1180:-106.4,-9.93399,0	1/1:16:0,16:0:0:16:553:-50.0447,-4.81648,0	1/1:47:0,47:0:0:47:1670:-150.552,-14.1484,0	0/1:32:23,9:23:800:9:320:-19.5094,0,-62.6828	0/1:21:11,10:11:392:10:360:-26.4135,0,-29.2984	1/1:14:0,14:0:0:14:500:-45.3239,-4.21442,0	0/1:6:1,5:1:36:5:176:-14.3748,0,-1.79209	1/1:82:0,82:0:0:82:2939:-264.222,-24.6845,0	1/1:81:0,81:0:0:81:2904:-261.532,-24.3834,0	0/1:56:35,21:35:1252:21:752:-51.0848,0,-96.1079	1/1:64:0,64:0:0:64:2288:-205.939,-19.2659,0	0/1:41:7,34:7:252:34:1220:-97.1778,0,-10.6858	1/1:50:0,50:0:0:50:1772:-159.6,-15.0515,0	0/1:155:67,88:67:2408:88:3152:-237.228,0,-170.316	1/1:152:2,150:2:68:150:5374:-476.017,-39.2989,0	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	1/1:126:0,126:0:0:126:4515:-406.461,-37.9298,0	1/1:69:0,69:0:0:69:2472:-222.484,-20.7711,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:18:8,10:8:288:10:345:-25.9623,0,-20.8479	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83481,-0.60206,0	1/1:12:0,12:0:0:12:432:-39.1826,-3.61236,0	1/1:97:0,97:0:0:97:3452:-310.711,-29.1999,0	0/1:55:29,26:29:1032:26:924:-66.921,0,-76.6368	0/1:11:3,8:3:108:8:288:-22.9497,0,-6.76384	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:80:36,44:36:1296:44:1584:-118.264,0,-92.8615	1/1:10:0,10:0:0:10:353:-31.9602,-3.0103,0	0/1:57:30,27:30:1058:27:944:-68.089,0,-78.3709	0/1:24:12,12:12:417:12:428:-31.6341,0,-30.6355	1/1:22:0,22:0:0:22:754:-68.1733,-6.62266,0	1/1:94:0,94:0:0:94:3364:-302.9,-28.2968,0	1/1:43:0,43:0:0:43:1529:-137.712,-12.9443,0	1/1:91:0,91:0:0:91:3230:-290.167,-27.3937,0	1/1:80:0,80:0:0:80:2876:-258.904,-24.0824,0	1/1:64:0,64:0:0:64:2296:-206.873,-19.2659,0	1/1:54:0,54:0:0:54:1940:-174.841,-16.2556,0	.:.:.:.:.:.:.:.	0/1:55:25,30:25:900:30:1061:-79.2169,0,-64.7635	1/1:25:0,25:0:0:25:900:-81.2952,-7.52575,0	0/1:15:4,11:4:144:11:368:-28.8482,0,-8.79817	0/1:48:32,16:32:1152:16:568:-37.0024,0,-89.5407	1/1:36:0,36:0:0:36:1292:-116.553,-10.8371,0	0/1:5:3,2:3:104:2:68:-4.95256,0,-8.19766	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:33:0,33:0:0:33:1168:-105.381,-9.93399,0	0/1:35:10,25:10:360:25:900:-70.7826,0,-22.2083	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:126:0,126:0:0:126:4467:-400.873,-37.9298,0	0/1:89:34,55:34:1224:55:1941:-148.053,0,-83.6754	1/1:44:0,44:0:0:44:1569:-141.453,-13.2453,0	1/1:40:0,40:0:0:40:1431:-129.058,-12.0412,0	1/1:102:0,101:0:0:101:3613:-324.764,-30.404,0	0/1:81:61,20:61:2188:20:716:-39.6041,0,-172.794	1/1:10:0,10:0:0:10:356:-32.3809,-3.0103,0	1/1:31:0,31:0:0:31:1116:-100.423,-9.33193,0	1/1:22:0,22:0:0:22:792:-71.5695,-6.62266,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:81:45,36:45:1620:36:1275:-90.3972,0,-121.704	0/1:42:21,21:21:756:21:748:-54.984,0,-55.724	1/1:75:0,75:0:0:75:2684:-241.625,-22.5773,0	0/1:80:41,39:41:1472:39:1404:-102.548,0,-108.694	0/1:31:15,16:15:540:16:572:-42.4675,0,-39.6046	1/1:35:0,35:0:0:35:1256:-113.243,-10.5361,0	0/1:9:4,5:4:144:5:180:-13.8382,0,-10.6043	0/1:53:25,28:25:896:28:1008:-74.9667,0,-65.0058	1/1:63:0,62:0:0:62:2201:-197.939,-18.6639,0	1/1:126:0,126:0:0:126:4498:-404.538,-37.9298,0	0/1:32:16,16:16:576:16:565:-41.3587,0,-42.542	1/1:27:0,27:0:0:27:956:-86.3372,-8.12781,0	0/1:22:11,11:11:396:11:396:-29.1309,0,-29.3601	1/1:42:0,42:0:0:42:1491:-134.437,-12.6433,0	0/1:17:10,7:10:360:7:239:-16.7169,0,-27.6268	1/1:40:0,40:0:0:40:1389:-125.269,-12.0412,0	1/1:32:0,32:0:0:32:1148:-103.463,-9.63296,0	0/1:6:5,1:5:171:1:36:-1.79209,0,-13.9193	0/1:28:14,14:14:504:14:496:-36.4007,0,-37.2693	0/1:22:14,8:14:500:8:288:-19.6432,0,-38.7135	1/1:94:0,94:0:0:94:3368:-302.72,-28.2968,0	1/1:43:0,43:0:0:43:1510:-136.15,-12.9443,0
chr03	26365188	.	G	T	45909.6	PASS	AB=0.385953;ABP=165.469;AC=147;AF=0.790323;AN=186;AO=2203;CIGAR=1X;DP=3092;DPB=3092;DPRA=0;EPP=4786.76;EPPR=1905.31;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.9905;MQMR=60;NS=93;NUMALT=1;ODDS=1.26673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78638;QR=31762;RO=888;RPL=2203;RPP=4786.76;RPPR=1905.31;RPR=0;RUN=1;SAF=2203;SAP=4786.76;SAR=0;SRF=888;SRP=1931.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:14,7:14:500:7:244:-15.9778,0,-39.0145	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:53:37,16:37:1328:16:572:-35.8588,0,-103.868	1/1:47:0,47:0:0:47:1671:-150.676,-14.1484,0	1/1:21:0,21:0:0:21:745:-67.3734,-6.32163,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:62:31,31:31:1116:31:1101:-80.7345,0,-82.0878	1/1:54:0,54:0:0:54:1926:-173.604,-16.2556,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:35:22,13:22:784:13:464:-31.5615,0,-60.3479	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	1/1:55:0,55:0:0:55:1957:-176.404,-16.5567,0	1/1:49:2,47:2:72:47:1671:-143.84,-7.91375,0	0/1:52:39,13:39:1396:13:468:-26.8061,0,-110.286	1/1:26:0,26:0:0:26:913:-82.484,-7.82678,0	0/1:49:26,23:26:924:23:828:-60.0936,0,-68.7272	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	0/1:126:77,49:77:2764:49:1760:-120.754,0,-211.071	1/1:80:0,80:0:0:80:2867:-258.266,-24.0824,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:31:0,31:0:0:31:1096:-98.9499,-9.33193,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:4:1,3:1:36:3:99:-8.03282,0,-2.39415	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:82:60,22:60:2152:22:788:-46.5603,0,-169.263	0/1:23:18,5:18:648:5:172:-8.89428,0,-51.7282	.:.:.:.:.:.:.:.	0/1:50:30,20:30:1053:20:720:-50.0773,0,-80.0271	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:55:36,19:36:1292:19:676:-44.6113,0,-100.027	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:43:0,43:0:0:43:1524:-137.453,-12.9443,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:57:29,28:29:1032:28:1006:-73.6975,0,-76.0348	1/1:30:0,30:0:0:30:1042:-94.088,-9.0309,0	0/1:17:8,9:8:288:9:312:-23.2978,0,-21.1499	0/1:55:32,23:32:1152:23:818:-57.3856,0,-87.4335	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	0/1:57:39,18:39:1391:18:636:-40.4093,0,-108.33	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:105:68,37:68:2421:37:1319:-87.403,0,-186.536	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:49:1,48:1:36:48:1720:-151.487,-11.1522,0	0/1:65:50,15:50:1796:15:524:-27.9221,0,-142.355	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:85:58,27:58:2079:27:961:-61.2177,0,-161.792	0/1:39:14,25:14:504:25:892:-68.8595,0,-33.9579	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:58:33,25:33:1180:25:900:-63.8613,0,-89.0483	0/1:38:23,15:23:809:15:540:-37.4974,0,-61.6892	1/1:52:1,51:1:36:51:1832:-161.563,-12.0553,0	0/1:10:3,7:3:108:7:239:-18.8324,0,-7.06487	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	1/1:27:1,26:1:36:26:932:-80.6006,-4.52954,0	1/1:87:0,87:0:0:87:3086:-277.969,-26.1896,0	0/1:42:26,16:26:913:16:576:-39.5317,0,-69.8407	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	1/1:13:0,12:0:0:12:428:-38.4992,-3.61236,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:15:0,15:0:0:15:521:-47.2163,-4.51545,0	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/1:35:24,11:24:864:11:392:-25.084,0,-67.5465	0/1:15:7,8:7:248:8:280:-21.0239,0,-18.1487	1/1:45:0,45:0:0:45:1590:-143.389,-13.5464,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0
chr03	26371646	.	C	T	25700.3	PASS	AB=0.511644;ABP=6.39846;AC=41;AF=0.218085;AN=188;AO=1482;CIGAR=1X;DP=6875;DPB=6875;DPRA=1.02318;EPP=3092.16;EPPR=11353.8;GTI=2;LEN=1;MEANALT=1.02083;MQM=59.9804;MQMR=59.9922;NS=94;NUMALT=1;ODDS=1.83165;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53044;QR=191838;RO=5390;RPL=1467;RPP=3092.16;RPPR=11353.8;RPR=15;RUN=1;SAF=0;SAP=3221.13;SAR=1482;SRF=0;SRP=11707.2;SRR=5390;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	0/0:121:120,1:120:4275:1:36:0,-32.8264,-381.331	0/1:84:44,40:44:1571:40:1434:-104.071,0,-116.394	0/0:227:227,0:227:8090:0:0:0,-68.3338,-728.121	0/0:62:62,0:62:2184:0:0:0,-18.6639,-196.824	0/0:17:16,0:16:576:0:0:0,-4.81648,-51.8152	0/1:95:41,54:41:1456:54:1936:-145.919,0,-102.736	0/0:148:148,0:148:5279:0:0:0,-44.5524,-475.247	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:95:48,47:48:1692:47:1684:-123.249,0,-123.968	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	0/0:40:39,1:39:1396:1:36:0,-8.44292,-122.341	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:70:70,0:70:2479:0:0:0,-21.0721,-223.364	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.169	0/1:42:25,17:25:896:17:606:-42.2282,0,-68.3171	0/1:77:39,38:39:1392:38:1364:-99.8814,0,-102.4	0/0:53:53,0:53:1875:0:0:0,-15.9546,-169.028	0/1:29:11,18:11:396:18:644:-49.5607,0,-27.2529	0/0:120:118,2:118:4185:2:68:0,-29.6659,-370.376	0/0:128:128,0:128:4527:0:0:0,-38.5318,-407.6	0/1:92:21,71:21:735:71:2536:-200.797,0,-38.7766	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/1:58:34,24:34:1204:24:860:-60.2621,0,-91.2061	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.945	0/1:219:93,126:93:3310:126:4517:-340.77,0,-232.193	0/0:109:109,0:109:3864:0:0:0,-32.8123,-347.959	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/0:164:164,0:164:5833:0:0:0,-49.3689,-525.029	0/0:181:181,0:181:6445:0:0:0,-54.4864,-580.139	0/0:67:63,3:63:2256:3:108:0,-10.1526,-193.228	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:9:8,1:8:280:1:36:-0.889005,0,-22.83	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:104:104,0:104:3710:0:0:0,-31.3071,-334.102	0/1:180:90,90:90:3190:90:3228:-236.556,0,-233.139	0/1:33:20,13:20:716:13:468:-32.5257,0,-54.8337	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:145:88,57:88:3142:57:2044:-140.582,0,-239.355	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:109:69,40:69:2472:40:1440:-97.0855,0,-189.921	0/1:42:25,17:25:892:17:612:-42.7702,0,-67.9564	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:48:43,5:43:1544:5:180:-2.10263,0,-124.804	0/0:90:90,0:90:3193:0:0:0,-27.0927,-287.594	0/0:164:163,0:163:5798:0:0:0,-49.0679,-521.578	0/0:79:79,0:79:2796:0:0:0,-23.7814,-251.88	0/0:144:144,0:144:5096:0:0:0,-43.3483,-458.785	0/0:145:145,0:145:5151:0:0:0,-43.6493,-463.735	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:95:46,49:46:1640:49:1740:-128.287,0,-119.291	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/1:114:35,79:35:1244:79:2833:-220.889,0,-77.9472	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/1:27:11,16:11:383:16:576:-44.0472,0,-26.6754	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/1:81:41,40:41:1467:40:1436:-105.154,0,-107.942	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:179:81,98:81:2884:98:3500:-261.319,0,-205.913	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.607	0/0:119:119,0:119:4229:0:0:0,-35.8226,-380.791	0/0:165:164,1:164:5858:1:36:0,-46.0717,-523.733	0/1:141:53,88:53:1884:88:3137:-240.11,0,-127.393	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/0:71:70,1:70:2512:1:36:0,-17.7749,-222.734	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:94:48,46:48:1720:46:1648:-120.312,0,-126.789	0/1:36:22,14:22:775:14:496:-34.1372,0,-59.2341	0/0:114:114,0:114:4056:0:0:0,-34.3174,-365.227	0/1:112:49,63:49:1739:63:2246:-168.688,0,-123.078	0/1:135:73,62:73:2591:62:2219:-159.335,0,-192.713	0/0:111:111,0:111:3951:0:0:0,-33.4143,-355.783	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:85:49,36:49:1737:36:1268:-88.8331,0,-131.025	0/0:93:93,0:93:3319:0:0:0,-27.9958,-298.928	0/0:133:133,0:133:4744:0:0:0,-40.037,-427.12	0/1:80:40,40:40:1432:40:1424:-104.375,0,-105.095	0/0:39:39,0:39:1382:0:0:0,-11.7402,-124.677	0/1:66:33,33:33:1180:33:1188:-87.3606,0,-86.6401	0/0:89:88,1:88:3122:1:36:0,-23.1934,-277.609	0/1:31:10,21:10:360:21:752:-58.6743,0,-23.4124	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.108	0/0:45:45,0:45:1583:0:0:0,-13.5463,-142.76	0/1:39:22,17:22:784:17:608:-43.3119,0,-59.1437	0/1:65:32,33:32:1140:33:1184:-87.3014,0,-83.3423	0/1:40:13,27:13:455:27:972:-75.7567,0,-29.2408	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73
chr03	26382917	.	A	G	191002	PASS	AB=0.824604;ABP=1505.79;AC=152;AF=0.844444;AN=180;AO=8408;CIGAR=1X;DP=8749;DPB=8749;DPRA=98.2921;EPP=16964.4;EPPR=734.797;GTI=14;LEN=1;MEANALT=1.04494;MQM=59.6903;MQMR=59.9792;NS=90;NUMALT=1;ODDS=134.204;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=297277;QR=12026;RO=337;RPL=0;RPP=18260.8;RPPR=734.797;RPR=8408;RUN=1;SAF=152;SAP=16964.4;SAR=8256;SRF=0;SRP=734.797;SRR=337;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:572:-51.7781,-4.81648,0	1/1:233:0,233:0:0:233:8233:-740.893,-70.14,0	0/1:94:12,82:12:432:82:2885:-231.584,0,-10.9244	1/1:334:0,333:0:0:333:11755:-1057.51,-100.243,0	1/1:47:0,47:0:0:47:1675:-151.025,-14.1484,0	1/1:63:0,63:0:0:63:2239:-201.431,-18.9649,0	1/1:65:5,60:5:180:60:2130:-175.403,-3.01489,0	1/1:169:0,169:0:0:169:5958:-535.689,-50.8741,0	1/1:111:0,111:0:0:111:3899:-351.043,-33.4143,0	0/1:68:9,59:9:309:59:2056:-164.815,0,-7.67067	1/1:49:0,49:0:0:49:1734:-156.32,-14.7505,0	1/1:57:0,57:0:0:57:2018:-181.817,-17.1587,0	1/1:71:0,71:0:0:71:2505:-225.685,-21.3731,0	1/1:38:0,38:0:0:38:1341:-120.988,-11.4391,0	1/1:50:0,50:0:0:50:1772:-159.757,-15.0515,0	0/1:29:8,21:8:284:21:748:-58.9154,0,-17.1735	0/1:31:6,25:6:212:25:884:-70.5112,0,-10.0929	1/1:45:0,45:0:0:45:1599:-144.129,-13.5464,0	0/1:24:8,16:8:288:16:559:-43.3952,0,-19.0427	1/1:337:0,337:0:0:337:11976:-1077.52,-101.447,0	1/1:171:0,171:0:0:171:6071:-546.434,-51.4761,0	0/1:48:7,41:7:252:41:1440:-115.444,0,-8.57952	1/1:101:0,101:0:0:101:3591:-323.063,-30.404,0	1/1:83:0,83:0:0:83:2903:-261.493,-24.9855,0	1/1:90:0,90:0:0:90:3211:-289.213,-27.0927,0	1/1:212:19,193:19:684:193:6813:-551.337,-1.92803,0	1/1:226:1,225:1:36:225:7932:-710.21,-64.4345,0	1/1:27:2,25:2:72:25:893:-73.8509,-1.29109,0	1/1:411:0,411:0:0:411:14623:-1315.55,-123.723,0	1/1:135:0,135:0:0:135:4777:-430.062,-40.6391,0	1/1:159:0,159:0:0:159:5616:-505.549,-47.8638,0	1/1:4:0,4:0:0:4:144:-13.3027,-1.20412,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	.:.:.:.:.:.:.:.	1/1:154:0,153:0:0:153:5401:-486.014,-46.0576,0	1/1:135:5,130:5:176:130:4600:-397.964,-24.454,0	1/1:31:2,29:2:72:29:1036:-86.7172,-2.49521,0	.:.:.:.:.:.:.:.	0/1:158:20,138:20:720:138:4880:-391.693,0,-17.566	1/1:43:0,43:0:0:43:1511:-136.26,-12.9443,0	0/1:91:11,80:11:396:80:2821:-226.721,0,-8.58902	0/1:31:6,25:6:212:25:874:-69.6433,0,-10.0929	1/1:49:0,49:0:0:49:1729:-155.867,-14.7505,0	1/1:112:0,112:0:0:112:3954:-356.041,-33.7154,0	1/1:123:0,123:0:0:123:4361:-392.657,-37.0267,0	1/1:214:0,214:0:0:214:7554:-679.878,-64.4204,0	1/1:165:0,165:0:0:165:5830:-524.771,-49.67,0	1/1:168:0,167:0:0:167:5924:-532.879,-50.272,0	1/1:257:0,257:0:0:257:9075:-816.484,-77.3647,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	1/1:139:13,126:13:460:126:4461:-359.855,-0.107796,0	1/1:29:0,29:0:0:29:1007:-90.9339,-8.72987,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:122:20,102:20:708:102:3580:-285.651,0,-27.3199	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	.:.:.:.:.:.:.:.	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:86:0,86:0:0:86:3045:-274.195,-25.8886,0	0/1:52:11,41:11:396:41:1464:-116.396,0,-20.3292	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:251:0,250:0:0:250:8836:-794.872,-75.2575,0	0/1:124:13,111:13:445:111:3903:-314.123,0,-3.04763	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	1/1:111:0,111:0:0:111:3887:-350.015,-33.4143,0	1/1:175:0,175:0:0:175:6229:-560.652,-52.6803,0	0/1:68:20,48:20:720:48:1697:-132.538,0,-44.6525	1/1:17:0,17:0:0:17:596:-53.9678,-5.11751,0	1/1:113:0,113:0:0:113:4022:-362.099,-34.0164,0	1/1:54:0,54:0:0:54:1898:-171.09,-16.2556,0	1/1:11:0,11:0:0:11:387:-35.142,-3.31133,0	0/1:93:20,73:20:716:73:2540:-200.797,0,-36.7719	0/1:56:15,41:15:536:41:1428:-111.937,0,-31.7171	1/1:206:0,206:0:0:206:7283:-655.293,-62.0122,0	0/1:179:31,148:31:1112:148:5198:-413.755,0,-46.507	0/1:51:5,46:5:176:46:1631:-131.72,0,-0.832489	1/1:90:0,90:0:0:90:3183:-286.676,-27.0927,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:104:13,91:13:468:91:3212:-257.974,0,-11.1525	1/1:160:0,160:0:0:160:5679:-511.194,-48.1648,0	1/1:336:0,336:0:0:336:11930:-1072.51,-101.146,0	0/1:65:15,50:15:536:50:1770:-140.001,0,-29.0079	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:42:5,37:5:176:37:1285:-103.299,0,-3.54176	1/1:115:0,115:0:0:115:4025:-362.415,-34.6185,0	0/1:15:5,10:5:180:10:347:-27.0482,0,-12.0366	1/1:46:0,46:0:0:46:1622:-146.11,-13.8474,0	1/1:47:0,47:0:0:47:1662:-149.813,-14.1484,0	0/1:13:3,10:3:108:10:352:-28.1048,0,-6.16178	0/1:47:11,36:11:392:36:1280:-101.332,0,-21.4716	0/1:26:12,14:12:428:14:496:-37.1475,0,-31.032	1/1:128:0,128:0:0:128:4523:-407.195,-38.5318,0	1/1:83:1,82:1:36:82:2926:-259.951,-21.3872,0
chr03	26475117	.	GC	AT,AC	122933	PASS	AB=0.574735,0.423819;ABP=103.627,107.559;AC=157,31;AF=0.835106,0.164894;AN=188;AO=7138,905;CIGAR=2X,1X1M;DP=8052;DPB=8052;DPRA=0,1.28141;EPP=8999.15,1823.31;EPPR=5.18177;GTI=3;LEN=2,1;MEANALT=1.56383,2.13333;MQM=23.8455,59.8431;MQMR=60;NS=94;NUMALT=2;ODDS=11.7439;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=254046,32309;QR=31;RO=1;RPL=6288,17;RPP=8999.15,1823.31;RPPR=5.18177;RPR=850,888;RUN=1,1;SAF=7138,905;SAP=15503,1968.19;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:5:0,4,1:0:0:4,1:144,32:-10.6597,-2.89828,-1.69416,-8.06748,0,-7.76645	1/1:77:0,77,0:0:0:77,0:2733,0:-165.911,-23.1793,0,-165.911,-23.1793,-165.911	1/2:41:0,18,23:0:0:18,23:644,824:-100.793,-67.5596,-62.1411,-33.5246,0,-26.6009	1/1:118:0,117,0:0:0:117,0:4159,0:-241.538,-35.2205,0,-241.538,-35.2205,-241.538	1/1:22:0,21,1:0:0:21,1:754,36:-43.7836,-6.32163,0,-40.8404,-3.02439,-40.5394	1/1:31:0,31,0:0:0:31,0:1116,0:-68.0431,-9.33193,0,-68.0431,-9.33193,-68.0431	1/2:65:0,38,27:0:0:38,27:1366,964:-147.611,-78.949,-67.5099,-68.9678,0,-60.84	1/1:65:0,65,0:0:0:65,0:2321,0:-141.425,-19.567,0,-141.425,-19.567,-141.425	1/1:46:0,46,0:0:0:46,0:1639,0:-98.6336,-13.8474,0,-98.6336,-13.8474,-98.6336	1/2:35:0,12,22:0:0:12,22:408,792:-85.3142,-64.6613,-61.049,-20.6109,0,-13.9883	1/1:200:0,200,0:0:0:200,0:7131,0:-412.856,-60.206,0,-412.856,-60.206,-412.856	1/1:41:0,41,0:0:0:41,0:1458,0:-87.7515,-12.3422,0,-87.7515,-12.3422,-87.7515	1/1:52:0,52,0:0:0:52,0:1870,0:-112.344,-15.6536,0,-112.344,-15.6536,-112.344	1/1:43:0,43,0:0:0:43,0:1537,0:-89.6803,-12.9443,0,-89.6803,-12.9443,-89.6803	1/1:44:0,44,0:0:0:44,0:1580,0:-91.5214,-13.2453,0,-91.5214,-13.2453,-91.5214	1/2:30:0,12,18:0:0:12,18:421,648:-74.0079,-53.2333,-49.621,-21.0543,0,-15.6357	1/2:43:0,19,23:0:0:19,23:673,815:-102.22,-66.5049,-60.7853,-35.7677,0,-28.844	1/1:41:0,41,0:0:0:41,0:1453,0:-88.8223,-12.3422,0,-88.8223,-12.3422,-88.8223	1/2:58:0,49,8:0:0:49,8:1736,284:-113.274,-23.2447,-8.49424,-90.1178,0,-87.7095	1/1:77:0,77,0:0:0:77,0:2751,0:-159.135,-23.1793,0,-159.135,-23.1793,-159.135	1/1:95:0,95,0:0:0:95,0:3377,0:-197.489,-28.5979,0,-197.489,-28.5979,-197.489	1/2:42:0,22,20:0:0:22,20:776,705:-99.5313,-57.7522,-51.1295,-42.0802,0,-36.0596	1/1:26:0,26,0:0:0:26,0:936,0:-54.5132,-7.82678,0,-54.5132,-7.82678,-54.5132	1/2:34:0,24,10:0:0:24,10:841,360:-71.5382,-29.7294,-22.5046,-42.1297,0,-39.1194	1/1:31:0,31,0:0:0:31,0:1092,0:-64.1587,-9.33193,0,-64.1587,-9.33193,-64.1587	1/2:173:0,85,88:0:0:85,88:3023,3104:-415.762,-253.051,-227.463,-163.009,0,-136.519	1/1:119:0,118,1:0:0:118,1:4223,35:-244.609,-35.5215,0,-242.03,-32.6235,-241.729	1/2:16:0,6,10:0:0:6,10:216,360:-40.1842,-29.734,-27.9278,-10.7276,0,-7.71728	1/1:124:0,123,1:0:0:123,1:4348,36:-272.033,-37.0267,0,-269.095,-33.7294,-268.794	1/1:56:0,56,0:0:0:56,0:2005,0:-116.662,-16.8577,0,-116.662,-16.8577,-116.662	1/1:74:0,74,0:0:0:74,0:2610,0:-153.493,-22.2762,0,-153.493,-22.2762,-153.493	1/1:353:0,352,1:0:0:352,1:12555,36:-730.862,-105.963,0,-727.924,-102.665,-727.623	1/1:221:0,219,1:0:0:219,1:7786,36:-454.93,-65.9256,0,-451.992,-62.9222,-451.691	1/1:90:0,88,2:0:0:88,2:3138,72:-187.839,-26.4906,0,-181.961,-20.256,-181.359	1/1:476:0,473,2:0:0:473,2:16785,72:-1010.89,-142.387,0,-1005.55,-136.968,-1004.95	1/1:467:0,467,0:0:0:467,0:16635,0:-1002.95,-140.581,0,-1002.95,-140.581,-1002.95	1/1:125:0,125,0:0:0:125,0:4462,0:-276.931,-37.6288,0,-276.931,-37.6288,-276.931	1/2:95:0,57,38:0:0:57,38:2037,1352:-210.282,-110.541,-93.3825,-100.045,0,-88.6059	1/2:137:0,112,25:0:0:112,25:3982,888:-278.268,-72.7115,-38.9962,-205.89,0,-198.364	1/1:88:0,87,1:0:0:87,1:3081,36:-180.288,-26.1896,0,-177.349,-22.8924,-177.048	1/2:64:0,32,32:0:0:32,32:1144,1148:-151.233,-93.9969,-84.3639,-57.5313,0,-47.8983	1/1:147:0,147,0:0:0:147,0:5273,0:-302.832,-44.2514,0,-302.832,-44.2514,-302.832	1/2:68:0,38,30:0:0:38,30:1351,1071:-154.488,-87.6707,-76.2316,-67.1176,0,-58.0867	1/2:35:0,16,19:0:0:16,19:574,684:-84.0989,-56.1708,-51.3543,-28.2163,0,-22.4967	1/1:28:0,28,0:0:0:28,0:1006,0:-58.3782,-8.42884,0,-58.3782,-8.42884,-58.3782	1/1:41:0,41,0:0:0:41,0:1470,0:-91.2261,-12.3422,0,-91.2261,-12.3422,-91.2261	1/1:39:0,39,0:0:0:39,0:1387,0:-83.2634,-11.7402,0,-83.2634,-11.7402,-83.2634	1/1:112:0,112,0:0:0:112,0:3973,0:-229.339,-33.7154,0,-229.339,-33.7154,-229.339	1/1:47:0,45,1:0:0:45,1:1595,31:-93.1274,-13.5464,0,-90.6373,-11.0652,-90.3362	1/1:64:0,64,0:0:0:64,0:2261,0:-132.875,-19.2659,0,-132.875,-19.2659,-132.875	1/1:32:0,32,0:0:0:32,0:1150,0:-71.304,-9.63296,0,-71.304,-9.63296,-71.304	1/1:229:0,227,2:0:0:227,2:8083,72:-467.934,-68.3338,0,-462.087,-62.129,-461.485	1/2:83:0,39,44:0:0:39,44:1365,1580:-201.453,-129.238,-117.498,-72.5102,0,-59.2649	1/1:12:0,12,0:0:0:12,0:432,0:-26.7185,-3.61236,0,-26.7185,-3.61236,-26.7185	1/1:191:0,188,3:0:0:188,3:6719,108:-406.551,-56.5936,0,-397.737,-47.4216,-396.834	1/2:47:0,20,27:0:0:20,27:707,968:-114.769,-79.3096,-73.289,-35.7443,0,-27.6165	1/1:25:0,25,0:0:0:25,0:900,0:-52.1519,-7.52575,0,-52.1519,-7.52575,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chr03	26475252	.	G	A	115356	PASS	AB=0.45348;ABP=54.327;AC=146;AF=0.776596;AN=188;AO=5308;CIGAR=1X;DP=6815;DPB=6815;DPRA=28.0508;EPP=11158.7;EPPR=3229.96;GTI=0;LEN=1;MEANALT=1.01099;MQM=59.9535;MQMR=59.9688;NS=94;NUMALT=1;ODDS=0.334172;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188881;QR=53650;RO=1506;RPL=43;RPP=11158.7;RPPR=3229.96;RPR=5265;RUN=1;SAF=0;SAP=11529.2;SAR=5308;SRF=0;SRP=3273.25;SRR=1506;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:27,27:27:949:27:945:-69.1066,0,-69.4672	1/1:105:0,105:0:0:105:3761:-338.689,-31.6082,0	0/1:67:47,20:47:1684:20:712:-44.2376,0,-131.678	1/1:122:0,122:0:0:122:4347:-391.405,-36.7257,0	1/1:57:0,57:0:0:57:2021:-182.161,-17.1587,0	1/1:43:0,43:0:0:43:1525:-137.541,-12.9443,0	0/1:116:52,64:52:1868:64:2281:-170.632,0,-133.48	1/1:103:0,103:0:0:103:3645:-328.247,-31.0061,0	1/1:113:0,113:0:0:113:3997:-359.922,-34.0164,0	0/1:103:62,41:62:2224:41:1430:-97.9849,0,-169.418	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	1/1:77:0,77:0:0:77:2711:-244.233,-23.1793,0	1/1:45:0,45:0:0:45:1603:-144.56,-13.5464,0	1/1:58:0,58:0:0:58:2076:-187.102,-17.4597,0	1/1:64:0,64:0:0:64:2273:-204.83,-19.2659,0	0/1:33:20,13:20:716:13:460:-31.8014,0,-54.8337	0/1:38:20,18:20:716:18:631:-45.6765,0,-53.3286	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:45:22,23:22:784:23:798:-58.5903,0,-57.3376	1/1:143:0,143:0:0:143:5120:-460.942,-43.0473,0	1/1:120:1,119:1:36:119:4237:-377.912,-32.5253,0	0/1:102:84,18:84:2978:18:644:-27.5855,0,-237.548	1/1:86:0,86:0:0:86:3058:-275.449,-25.8886,0	0/1:60:34,26:34:1201:26:924:-65.4159,0,-90.3319	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:222:114,108:114:4055:108:3849:-279.775,0,-298.311	1/1:135:0,135:0:0:135:4813:-433.319,-40.6391,0	0/1:31:22,9:22:784:9:320:-19.8104,0,-61.552	1/1:169:0,169:0:0:169:6014:-541.363,-50.8741,0	1/1:141:1,140:1:36:140:4969:-443.134,-38.847,0	1/1:110:0,110:0:0:110:3921:-353.082,-33.1133,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:144:0,144:0:0:144:5102:-459.326,-43.3483,0	0/1:153:62,91:62:2208:91:3241:-245.853,0,-152.923	0/1:42:11,31:11:392:31:1093:-86.0344,0,-22.9768	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:130:64,66:64:2289:66:2368:-174.244,0,-167.136	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:165:69,96:69:2444:96:3440:-260.143,0,-170.544	0/1:44:23,21:23:824:21:744:-54.039,0,-61.238	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	1/1:104:0,104:0:0:104:3679:-331.312,-31.3071,0	1/1:80:0,80:0:0:80:2824:-254.399,-24.0824,0	1/1:98:0,98:0:0:98:3489:-314.221,-29.5009,0	1/1:74:0,74:0:0:74:2628:-236.765,-22.2762,0	1/1:86:0,86:0:0:86:3067:-276.259,-25.8886,0	1/1:172:0,172:0:0:172:6149:-553.479,-51.7772,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:99:56,43:56:1995:43:1518:-107.107,0,-149.831	1/1:58:0,58:0:0:58:2067:-186.3,-17.4597,0	0/1:9:6,3:6:212:3:104:-6.99354,0,-16.7155	0/1:96:49,47:49:1756:47:1688:-123.308,0,-129.425	1/1:72:1,71:1:36:71:2523:-223.712,-18.0759,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:78:0,78:0:0:78:2741:-246.934,-23.4803,0	0/1:93:58,35:58:2051:35:1243:-84.1781,0,-156.866	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:69:0,69:0:0:69:2472:-222.733,-20.7711,0	0/1:141:73,68:73:2607:68:2412:-174.883,0,-192.433	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	1/1:56:0,56:0:0:56:1995:-179.822,-16.8577,0	1/1:118:3,115:3:104:115:4097:-359.105,-25.8187,0	0/1:87:55,32:55:1967:32:1152:-77.8005,0,-151.115	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:67:0,67:0:0:67:2375:-214.006,-20.169,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:97:50,47:50:1783:47:1692:-123.367,0,-131.506	0/1:35:25,10:25:892:10:356:-21.8452,0,-70.0636	1/1:200:0,200:0:0:200:7136:-642.227,-60.206,0	0/1:94:61,33:61:2184:33:1153:-75.7763,0,-168.529	0/1:80:45,35:45:1598:35:1251:-88.8119,0,-120.026	1/1:48:0,47:0:0:47:1677:-151.002,-14.1484,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:76:38,38:38:1368:38:1364:-100.182,0,-100.543	1/1:56:0,56:0:0:56:1993:-179.642,-16.8577,0	1/1:176:0,176:0:0:176:6268:-564.214,-52.9813,0	0/1:90:47,43:47:1680:43:1544:-112.16,0,-124.394	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	0/1:93:45,48:45:1597:48:1696:-124.928,0,-116.022	1/1:100:0,100:0:0:100:3528:-317.731,-30.103,0	0/1:31:15,16:15:521:16:576:-42.8431,0,-37.8844	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:52:0,52:0:0:52:1855:-167.229,-15.6536,0	0/1:39:26,13:26:913:13:455:-29.5418,0,-70.7438	0/1:88:60,28:60:2131:28:999:-63.7339,0,-165.567	0/1:52:38,14:38:1351:14:500:-29.6826,0,-106.236	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:45:0,45:0:0:45:1606:-144.83,-13.5464,0
chr03	26476831	.	C	T	150200	PASS	AB=0.485585;ABP=8.58213;AC=148;AF=0.787234;AN=188;AO=6920;CIGAR=1X;DP=8516;DPB=8516;DPRA=0;EPP=15029.6;EPPR=3462.17;GTI=4;LEN=1;MEANALT=1.03191;MQM=59.9282;MQMR=59.9918;NS=94;NUMALT=1;ODDS=0.790136;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247270;QR=56768;RO=1593;RPL=6920;RPP=15029.6;RPPR=3462.17;RPR=0;RUN=1;SAF=6920;SAP=15029.6;SAR=0;SRF=1593;SRP=3462.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:17,21:17:600:21:748:-56.1353,0,-42.8901	1/1:69:0,69:0:0:69:2444:-220.214,-20.7711,0	0/1:129:65,64:65:2328:64:2285:-167.077,0,-170.947	1/1:224:1,223:1:36:223:7974:-714.078,-63.8324,0	1/1:53:0,53:0:0:53:1889:-170.23,-15.9546,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:71:39,32:39:1389:32:1144:-81.3353,0,-103.934	1/1:115:0,115:0:0:115:4120:-370.98,-34.6185,0	1/1:103:0,103:0:0:103:3694:-332.65,-31.0061,0	0/1:103:52,51:52:1855:51:1836:-134.515,0,-136.223	1/1:36:0,36:0:0:36:1277:-115.231,-10.8371,0	1/1:103:0,103:0:0:103:3656:-329.244,-31.0061,0	1/1:75:0,75:0:0:75:2668:-240.364,-22.5773,0	1/1:74:0,74:0:0:74:2639:-237.756,-22.2762,0	1/1:79:0,79:0:0:79:2840:-255.834,-23.7814,0	0/1:65:31,34:31:1112:34:1220:-90.5399,0,-80.8244	0/1:51:22,29:22:780:29:1036:-78.2014,0,-55.1705	1/1:42:0,42:0:0:42:1508:-136.01,-12.6433,0	0/1:36:15,21:15:527:21:748:-56.8082,0,-36.9231	1/1:166:0,166:0:0:166:5947:-535.299,-49.971,0	1/1:226:0,226:0:0:226:8075:-726.737,-68.0328,0	0/1:124:79,45:79:2821:45:1612:-108.042,0,-216.8	1/1:184:1,182:1:36:182:6501:-581.452,-51.7751,0	0/1:58:29,29:29:1023:29:1040:-76.4546,0,-74.922	1/1:57:0,57:0:0:57:2028:-182.772,-17.1587,0	0/1:205:85,120:85:3039:120:4290:-324.565,0,-212.028	1/1:206:0,206:0:0:206:7348:-661.366,-62.0122,0	0/1:46:24,22:24:847:22:784:-57.0365,0,-62.7013	1/1:236:0,236:0:0:236:8460:-761.39,-71.0431,0	1/1:148:0,148:0:0:148:5304:-477.477,-44.5524,0	1/1:103:0,103:0:0:103:3688:-332.123,-31.0061,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:204:0,204:0:0:204:7288:-655.957,-61.4101,0	0/1:123:68,54:68:2423:54:1925:-136.439,0,-181.24	0/1:99:39,60:39:1400:60:2124:-161.61,0,-96.4972	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:102:52,50:52:1851:50:1773:-129.146,0,-136.164	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:148:66,82:66:2372:82:2924:-218.84,0,-169.185	0/1:80:50,30:50:1768:30:1053:-70.9962,0,-135.318	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:98:1,96:1:36:96:3433:-305.602,-25.9365,0	1/1:87:0,87:0:0:87:3091:-278.417,-26.1896,0	1/1:155:0,155:0:0:155:5541:-498.802,-46.6597,0	1/1:92:0,92:0:0:92:3297:-296.947,-27.6948,0	1/1:96:0,96:0:0:96:3452:-310.885,-28.8989,0	1/1:84:0,84:0:0:84:3012:-271.31,-25.2865,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:100:60,40:60:2156:40:1436:-99.4347,0,-164.204	1/1:55:0,55:0:0:55:1961:-176.765,-16.5567,0	0/1:4:1,3:1:32:3:104:-8.49868,0,-1.99519	0/1:136:74,62:74:2624:62:2228:-159.844,0,-195.466	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:7:1,6:1:36:6:201:-16.3098,0,-1.49106	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:78:0,78:0:0:78:2783:-250.709,-23.4803,0	0/1:86:45,41:45:1584:41:1468:-106.528,0,-116.959	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:215:0,215:0:0:215:7698:-692.849,-64.7215,0	0/1:199:109,90:109:3885:90:3218:-229.935,0,-289.939	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	1/1:96:0,96:0:0:96:3413:-307.313,-28.8989,0	1/1:300:0,300:0:0:300:10709:-963.694,-90.309,0	0/1:147:108,39:108:3880:39:1400:-82.0478,0,-305.142	1/1:41:1,40:1:36:40:1424:-124.859,-8.74396,0	1/1:49:0,49:0:0:49:1760:-158.683,-14.7505,0	1/1:39:0,39:0:0:39:1400:-126.293,-11.7402,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:107:52,55:52:1859:55:1946:-143.197,0,-135.379	0/1:90:39,51:39:1404:51:1824:-137.348,0,-99.5666	1/1:145:0,145:0:0:145:5185:-466.787,-43.6494,0	0/1:166:75,91:75:2700:91:3264:-244.006,0,-193.272	0/1:96:42,54:42:1459:54:1927:-144.807,0,-102.671	1/1:84:1,83:1:36:83:2956:-262.636,-21.6882,0	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:91:45,46:45:1588:46:1641:-120.583,0,-115.814	1/1:127:0,127:0:0:127:4526:-407.377,-38.2308,0	1/1:206:1,205:1:32:205:7348:-658.166,-58.8129,0	0/1:67:32,35:32:1131:35:1251:-92.7253,0,-81.9287	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	0/1:43:22,21:22:788:21:739:-53.8881,0,-58.3005	1/1:177:0,177:0:0:177:6332:-569.965,-53.2823,0	0/1:33:15,18:15:540:18:634:-47.4532,0,-39.0025	1/1:89:0,89:0:0:89:3175:-285.966,-26.7917,0	1/1:79:0,79:0:0:79:2808:-252.958,-23.7814,0	0/1:26:12,14:12:432:14:500:-37.5094,0,-31.3944	0/1:78:42,36:42:1490:36:1292:-93.1034,0,-110.913	0/1:93:60,33:60:2113:33:1167:-77.3406,0,-162.442	1/1:90:0,90:0:0:90:3209:-289.03,-27.0927,0	1/1:110:0,110:0:0:110:3935:-354.342,-33.1133,0
chr03	26489619	.	CTTGA	ATTGA,ATTT	108100	PASS	AB=0.435666,0.561625;ABP=82.6391,76.0747;AC=146,42;AF=0.776596,0.223404;AN=188;AO=3833,1247;CIGAR=1X4M,1X2M1D1X;DP=5108;DPB=4859.4;DPRA=0,0.985956;EPP=8248.27,2710.84;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=1.7234,2.13636;MQM=59.7516,37.3504;MQMR=50;NS=94;NUMALT=2;ODDS=3.14819;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=88,88;PQR=0;PRO=0;QA=137443,44150;QR=27;RO=1;RPL=3824,1247;RPP=8248.27,2710.84;RPPR=5.18177;RPR=9,0;RUN=1,1;SAF=3833,1247;SAP=8326.26,2710.84;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:0,32,22:0:0:32,22:1148,774:-149.923,-56.2995,-46.6666,-93.9566,0,-87.3339	1/1:91:0,91,0:0:0:91,0:3261,0:-293.654,-27.3937,0,-293.654,-27.3937,-293.654	1/2:57:0,19,38:0:0:19,38:684,1338:-151.778,-95.958,-90.2384,-56.164,0,-44.7249	1/1:129:0,127,2:0:0:127,2:4545,72:-408.871,-38.2308,0,-403.31,-32.328,-402.708	1/1:74:0,74,0:0:0:74,0:2656,0:-239.198,-22.2762,0,-239.198,-22.2762,-239.198	1/1:24:0,24,0:0:0:24,0:856,0:-77.3611,-7.22472,0,-77.3611,-7.22472,-77.3611	1/2:66:0,31,35:0:0:31,35:1103,1228:-182.231,-92.3259,-82.994,-90.2463,0,-79.7103	1/1:81:0,81,0:0:0:81,0:2901,0:-261.314,-24.3834,0,-261.314,-24.3834,-261.314	1/1:52:0,52,0:0:0:52,0:1855,0:-167.219,-15.6536,0,-167.219,-15.6536,-167.219	1/2:69:0,26,43:0:0:26,43:936,1522:-192.708,-116.326,-108.499,-76.7319,0,-63.7876	1/1:25:0,25,0:0:0:25,0:900,0:-81.3202,-7.52575,0,-81.3202,-7.52575,-81.3202	1/1:28:0,28,0:0:0:28,0:1008,0:-91.033,-8.42884,0,-91.033,-8.42884,-91.033	1/1:25:0,25,0:0:0:25,0:900,0:-81.3143,-7.52575,0,-81.3143,-7.52575,-81.3143	1/1:31:0,31,0:0:0:31,0:1112,0:-100.375,-9.33193,0,-100.375,-9.33193,-100.375	1/1:29:0,28,1:0:0:28,1:1000,33:-89.9938,-8.42884,0,-87.4137,-5.52715,-87.1127	1/2:43:0,22,21:0:0:22,21:792,753:-121.063,-56.4252,-49.8025,-64.983,0,-58.6614	1/2:17:0,10,7:0:0:10,7:356,244:-47.18,-18.1882,-15.1779,-29.3247,0,-27.2175	1/1:31:0,30,0:0:0:30,0:1080,0:-97.0333,-9.0309,0,-97.0333,-9.0309,-97.0333	1/2:17:0,12,5:0:0:12,5:428,180:-48.3396,-13.4272,-9.81482,-35.2464,0,-33.7413	1/1:84:0,83,0:0:0:83,0:2980,0:-268.069,-24.9855,0,-268.069,-24.9855,-268.069	1/1:72:0,71,0:0:0:71,0:2556,0:-229.922,-21.3731,0,-229.922,-21.3731,-229.922	1/2:115:0,36,79:0:0:36,79:1284,2806:-323.454,-218.786,-207.949,-105.02,0,-81.2388	1/1:58:0,58,0:0:0:58,0:2073,0:-186.829,-17.4597,0,-186.829,-17.4597,-186.829	1/2:77:0,41,36:0:0:41,36:1476,1277:-216.558,-96.1242,-83.782,-120.777,0,-109.94	1/1:39:0,39,0:0:0:39,0:1400,0:-126.223,-11.7402,0,-126.223,-11.7402,-126.223	1/2:202:0,85,117:0:0:85,117:3047,4139:-572.495,-323.989,-298.401,-248.857,0,-213.637	1/1:135:0,134,0:0:0:134,0:4808,0:-432.493,-40.338,0,-432.493,-40.338,-432.493	1/2:20:0,8,12:0:0:8,12:288,419:-53.0007,-29.4788,-27.0706,-23.8592,0,-20.2468	1/1:149:0,147,0:0:0:147,0:5256,0:-472.584,-44.2514,0,-472.584,-44.2514,-472.584	1/1:79:0,79,0:0:0:79,0:2832,0:-255.101,-23.7814,0,-255.101,-23.7814,-255.101	1/1:108:0,106,0:0:0:106,0:3802,0:-341.999,-31.9092,0,-341.999,-31.9092,-341.999	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:36:0,15,21:0:0:15,21:540,755:-99.6866,-55.6112,-51.0957,-44.4211,0,-38.0995	1/2:3:0,1,2:0:0:1,2:36,72:-8.5148,-5.56564,-5.26461,-3.29724,0,-2.69518	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:14:0,14,0:0:0:14,0:504,0:-45.6947,-4.21442,0,-45.6947,-4.21442,-45.6947	1/1:85:0,85,0:0:0:85,0:3056,0:-275.268,-25.5876,0,-275.268,-25.5876,-275.268	1/2:82:0,41,41:0:0:41,41:1453,1452:-226.544,-108.167,-95.8244,-118.66,0,-106.317	1/2:24:0,11,13:0:0:11,13:396,463:-66.4871,-34.1619,-30.8505,-32.668,0,-28.7547	1/2:7:0,5,2:0:0:5,2:180,71:-20.4072,-5.70001,-4.19486,-15.0469,0,-14.4449	1/2:110:0,47,63:0:0:47,63:1673,2246:-303.101,-166.746,-152.598,-136.698,0,-117.733	1/1:21:0,21,0:0:0:21,0:752,0:-68.0001,-6.32163,0,-68.0001,-6.32163,-68.0001	1/2:125:0,55,69:0:0:55,69:1965,2415:-339.258,-179.058,-162.502,-160.181,0,-139.41	1/2:21:0,16,5:0:0:16,5:572,180:-60.8932,-14.2434,-9.42694,-46.9957,0,-45.4906	1/1:23:0,23,0:0:0:23,0:819,0:-74.0278,-6.92369,0,-74.0278,-6.92369,-74.0278	1/1:84:0,83,0:0:0:83,0:2984,0:-268.422,-24.9855,0,-268.422,-24.9855,-268.422	1/1:44:0,44,0:0:0:44,0:1576,0:-142.063,-13.2453,0,-142.063,-13.2453,-142.063	1/1:34:0,34,0:0:0:34,0:1220,0:-110.106,-10.235,0,-110.106,-10.235,-110.106	1/1:58:0,58,0:0:0:58,0:2084,0:-187.785,-17.4597,0,-187.785,-17.4597,-187.785	1/1:47:0,47,0:0:0:47,0:1688,0:-152.202,-14.1484,0,-152.202,-14.1484,-152.202	1/1:121:0,120,0:0:0:120,0:4293,0:-386.245,-36.1236,0,-386.245,-36.1236,-386.245	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:77:0,30,47:0:0:30,47:1076,1675:-210.393,-122.626,-113.595,-88.1119,0,-73.9635	1/2:32:0,8,24:0:0:8,24:288,853:-90.3828,-66.8789,-64.4706,-23.8592,0,-16.6344	1/2:11:0,6,5:0:0:6,5:212,180:-30.7048,-13.4272,-11.621,-17.6152,0,-16.1101	1/2:52:0,17,35:0:0:17,35:608,1247:-143.771,-94.1852,-89.0676,-49.9345,0,-39.3985	1/1:43:1,42,0:1:27:42,0:1508,0:-133.315,-10.2465,0,-133.616,-12.6433,-135.741	1/2:18:0,9,9: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chr03	26571502	.	C	T	23014.3	PASS	AB=0.514318;ABP=7.73616;AC=41;AF=0.22043;AN=186;AO=1373;CIGAR=1X;DP=6174;DPB=6174;DPRA=0.96385;EPP=2984.44;EPPR=10415.2;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.4297;MQMR=59.917;NS=93;NUMALT=1;ODDS=6.71341;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48979;QR=171136;RO=4795;RPL=0;RPP=2984.44;RPPR=10415.2;RPR=1373;RUN=1;SAF=0;SAP=2984.44;SAR=1373;SRF=0;SRP=10415.2;SRR=4795;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:19,25:19:684:25:900:-68.0292,0,-48.645	0/0:69:68,1:68:2428:1:36:0,-17.1728,-215.178	0/1:83:47,36:47:1684:36:1296:-91.7601,0,-126.862	0/0:142:142,0:142:5104:0:0:0,-42.7463,-459.131	0/0:89:89,0:89:3187:0:0:0,-26.7917,-287.036	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:95:65,29:65:2340:29:1032:-64.5225,0,-182.202	0/0:163:163,0:163:5794:0:0:0,-49.0679,-521.371	0/0:32:31,1:31:1116:1:36:0,-6.03468,-97.1534	0/1:55:22,33:22:792:33:1182:-89.3918,0,-55.049	0/0:64:64,0:64:2274:0:0:0,-19.2659,-204.921	0/0:49:49,0:49:1726:0:0:0,-14.7505,-155.621	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/0:66:66,0:66:2353:0:0:0,-19.868,-211.875	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8432	0/1:30:15,15:15:540:15:540:-39.8918,0,-39.9056	0/1:61:31,30:31:1112:30:1076:-78.7655,0,-82.0285	0/0:32:31,0:31:1100:0:0:0,-9.33193,-98.9893	0/1:23:12,11:12:414:11:396:-29.0591,0,-30.6652	0/0:132:132,0:132:4731:0:0:0,-39.736,-425.861	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7906	0/1:135:41,94:41:1468:94:3348:-260.893,0,-91.777	0/0:16:15,1:15:540:1:36:0,-1.2182,-45.3383	0/1:73:43,30:43:1529:30:1076:-75.1638,0,-115.926	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:192:77,115:77:2757:115:4108:-312.096,0,-190.544	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/1:28:12,16:12:428:16:572:-43.3846,0,-30.4253	0/0:248:248,0:248:8853:0:0:0,-74.6554,-796.751	0/0:75:75,0:75:2635:0:0:0,-22.5772,-237.358	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.977	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:26:13,13:13:459:13:468:-34.6103,0,-33.8173	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5666	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:104:104,0:104:3673:0:0:0,-31.3071,-330.776	0/1:102:53,49:53:1891:49:1732:-125.434,0,-139.763	0/1:42:23,19:23:828:19:684:-49.2462,0,-62.2009	.:.:.:.:.:.:.:.	0/1:121:61,60:61:2188:60:2152:-157.379,0,-160.752	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.269	0/1:94:55,39:55:1968:39:1384:-96.4161,0,-149.094	0/1:27:16,11:16:576:11:388:-27.1286,0,-44.0472	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.437	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:127:125,0:125:4471:0:0:0,-37.6287,-402.195	0/0:106:106,0:106:3791:0:0:0,-31.9092,-341.386	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.871	0/0:155:155,0:155:5535:0:0:0,-46.6596,-498.273	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:146:71,75:71:2556:75:2671:-196.596,0,-186.321	0/1:53:24,29:24:860:29:1032:-77.2362,0,-61.7672	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:72:38,34:38:1368:34:1189:-85.4001,0,-101.747	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7419	0/1:8:2,6:2:72:6:207:-16.5584,0,-4.42848	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.313	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/1:124:57,67:57:2032:67:2408:-179.618,0,-145.825	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:102:101,0:101:3612:0:0:0,-30.404,-324.915	0/1:126:67,59:67:2383:59:2092:-150.517,0,-176.798	0/0:94:93,1:93:3328:1:36:0,-24.6985,-296.14	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.878	0/0:66:65,1:65:2305:1:36:0,-16.2697,-204.111	0/1:123:35,88:35:1260:88:3160:-247.591,0,-76.0509	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.542	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:166:87,79:87:3092:79:2808:-202.969,0,-228.338	0/1:52:22,30:22:775:30:1072:-81.1226,0,-54.4176	0/0:61:61,0:61:2164:0:0:0,-18.3628,-194.97	0/1:80:44,36:44:1580:36:1277:-91.144,0,-118.409	0/1:96:63,33:63:2264:33:1173:-76.9229,0,-175.119	0/0:64:62,1:62:2201:1:36:0,-15.6515,-194.828	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:68:30,38:30:1080:38:1351:-101.41,0,-77.0386	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.294	0/0:155:155,0:155:5520:0:0:0,-46.6596,-496.926	0/1:68:31,37:31:1090:37:1324:-98.9917,0,-77.9379	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:29:19,10:19:680:10:360:-24.0144,0,-52.7993	0/0:73:73,0:73:2542:0:0:0,-21.9752,-229.028	0/1:23:9,14:9:309:14:500:-38.4109,0,-21.217	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.908	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.78	0/1:28:11,17:11:388:17:599:-45.8017,0,-26.8285	0/1:91:46,45:46:1648:45:1600:-116.878,0,-121.215	0/1:31:5,26:5:180:26:926:-74.0821,0,-7.22013	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:49:49,0:49:1735:0:0:0,-14.7505,-156.434
chr03	26573893	.	A	G	14020.7	PASS	AB=0.530151;ABP=15.5808;AC=40;AF=0.215054;AN=186;AO=854;CIGAR=1X;DP=4077;DPB=4077;DPRA=0.944108;EPP=1857.45;EPPR=6999.49;GTI=1;LEN=1;MEANALT=1.02174;MQM=60;MQMR=59.9988;NS=93;NUMALT=1;ODDS=4.21237;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30208;QR=112489;RO=3222;RPL=854;RPP=1857.45;RPPR=6999.49;RPR=0;RUN=1;SAF=854;SAP=1857.45;SAR=0;SRF=3222;SRP=6999.49;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:28,17:28:995:17:599:-40.6917,0,-76.3177	0/0:20:20,0:20:704:0:0:0,-6.0206,-63.6845	0/1:46:32,14:32:1114:14:492:-30.765,0,-86.7183	0/0:87:87,0:87:3027:0:0:0,-26.1896,-272.661	0/0:43:43,0:43:1500:0:0:0,-12.9443,-135.29	0/0:12:12,0:12:394:0:0:0,-3.61236,-35.7745	0/1:42:20,22:20:693:22:759:-55.9838,0,-50.0463	0/0:90:90,0:90:3164:0:0:0,-27.0927,-284.989	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/1:57:20,37:20:687:37:1320:-101.943,0,-44.9906	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:47:46,1:46:1606:1:36:0,-10.5501,-141.229	0/0:39:39,0:39:1363:0:0:0,-11.7402,-122.968	0/0:20:19,1:19:671:1:36:0,-2.42232,-57.1175	0/0:31:31,0:31:1088:0:0:0,-9.33193,-98.2292	0/1:22:6,16:6:216:16:557:-43.8339,0,-13.1679	0/1:7:4,3:4:136:3:99:-7.12937,0,-10.4683	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:10:6,4:6:208:4:144:-10.3033,0,-16.0488	0/0:76:76,0:76:2634:0:0:0,-22.8783,-237.308	0/0:63:63,0:63:2177:0:0:0,-18.9649,-196.194	0/1:54:20,34:20:682:34:1220:-93.8512,0,-45.4391	0/0:45:45,0:45:1572:0:0:0,-13.5463,-141.771	0/1:48:30,18:30:1052:18:648:-44.2024,0,-80.5383	0/0:50:50,0:50:1736:0:0:0,-15.0515,-156.522	0/1:154:66,88:66:2316:88:3125:-235.118,0,-162.341	0/0:94:94,0:94:3310:0:0:0,-28.2968,-298.119	0/1:16:9,7:9:312:7:248:-17.8477,0,-23.5989	0/0:108:107,1:107:3766:1:36:0,-28.913,-335.546	0/0:40:40,0:40:1389:0:0:0,-12.0412,-125.305	0/0:36:36,0:36:1259:0:0:0,-10.8371,-113.612	0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0779	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:110:110,0:110:3826:0:0:0,-33.1133,-344.544	0/1:71:25,46:25:892:46:1615:-124.265,0,-59.2266	0/1:14:8,6:8:280:6:212:-15.2104,0,-21.3249	.:.:.:.:.:.:.:.	0/1:24:8,16:8:280:16:568:-44.2271,0,-18.3146	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/1:109:57,52:57:1982:52:1825:-131.714,0,-145.839	0/1:20:7,13:7:240:13:464:-36.0769,0,-15.9141	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2068	0/0:79:79,0:79:2745:0:0:0,-23.7814,-247.29	0/0:45:45,0:45:1528:0:0:0,-13.5463,-137.803	0/0:114:114,0:114:3935:0:0:0,-34.3174,-354.349	0/0:52:52,0:52:1825:0:0:0,-15.6536,-164.529	0/0:73:73,0:73:2505:0:0:0,-21.9752,-225.706	0/0:28:28,0:28:987:0:0:0,-8.42884,-89.143	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:66:31,35:31:1081:35:1241:-92.1245,0,-77.7286	0/1:24:14,10:14:489:10:360:-25.5196,0,-37.1142	0/1:10:4,6:4:135:6:216:-16.7802,0,-9.47221	0/1:82:36,46:36:1264:46:1628:-122.124,0,-89.3781	0/0:21:21,0:21:716:0:0:0,-6.32163,-64.7548	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:12:8,4:8:271:4:140:-9.33222,0,-21.1071	0/0:50:50,0:50:1745:0:0:0,-15.0515,-157.332	0/1:42:19,23:19:653:23:805:-60.1242,0,-46.446	0/1:7:5,2:5:171:2:72:-4.72951,0,-13.6182	0/0:80:78,1:78:2720:1:36:0,-20.5429,-241.447	0/1:90:44,46:44:1532:46:1616:-118.634,0,-111.076	0/0:46:46,0:46:1605:0:0:0,-13.8474,-144.737	0/0:26:26,0:26:886:0:0:0,-7.82678,-80.0505	0/0:64:63,1:63:2252:1:36:0,-15.6676,-199.345	0/1:70:21,49:21:748:49:1735:-135.361,0,-46.5732	0/0:27:26,1:26:893:1:36:0,-4.52953,-77.0825	0/0:41:41,0:41:1427:0:0:0,-12.3422,-128.725	0/0:17:16,1:16:564:1:36:0,-1.51923,-47.492	0/0:13:13,0:13:441:0:0:0,-3.91339,-40.0132	0/1:79:39,40:39:1384:40:1415:-103.865,0,-101.077	0/1:75:47,28:47:1633:28:998:-67.558,0,-124.679	0/0:77:77,0:77:2698:0:0:0,-23.1793,-243.064	0/1:50:24,26:24:851:26:924:-68.4262,0,-61.858	0/1:38:15,23:15:532:23:815:-62.2316,0,-36.7739	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5438	0/1:9:6,3:6:208:3:108:-7.3659,0,-16.3498	0/1:38:8,30:8:288:30:1072:-85.3533,0,-14.8283	0/0:42:42,0:42:1421:0:0:0,-12.6433,-128.177	0/0:100:100,0:100:3526:0:0:0,-30.103,-317.553	0/1:19:8,11:8:288:11:388:-29.5378,0,-20.5478	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:23:13,10:13:452:10:345:-24.4588,0,-34.0874	0/0:80:80,0:80:2802:0:0:0,-24.0824,-252.42	0/1:16:8,8:8:267:8:288:-21.4509,0,-19.5389	0/0:40:40,0:40:1407:0:0:0,-12.0412,-126.926	0/0:34:34,0:34:1195:0:0:0,-10.235,-107.855	0/1:16:9,7:9:316:7:248:-17.8477,0,-23.9624	0/1:56:31,25:31:1038:25:867:-61.4871,0,-76.8629	0/1:27:11,16:11:381:16:564:-42.9625,0,-26.4928	0/0:70:70,0:70:2452:0:0:0,-21.0721,-220.937	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.294
chr03	26579930	.	T	C	25061.2	PASS	AB=0.524947;ABP=18.1781;AC=40;AF=0.212766;AN=188;AO=1476;CIGAR=1X;DP=7093;DPB=7093;DPRA=0.997917;EPP=3208.1;EPPR=12195.8;GTI=0;LEN=1;MEANALT=1.04651;MQM=53.3794;MQMR=59.8873;NS=94;NUMALT=1;ODDS=3.34917;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52937;QR=201144;RO=5615;RPL=0;RPP=3208.1;RPPR=12195.8;RPR=1476;RUN=1;SAF=1476;SAP=3208.1;SAR=0;SRF=5615;SRP=12195.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:12,28:12:428:28:1008:-77.8141,0,-26.8176	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:277:65,212:65:2332:212:7600:-596.129,0,-126.754	0/0:155:155,0:155:5560:0:0:0,-46.6596,-500.43	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:89:49,40:49:1752:40:1440:-102.662,0,-131.172	0/0:135:135,0:135:4817:0:0:0,-40.639,-433.11	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.122	0/1:70:33,37:33:1184:37:1332:-97.5064,0,-85.7962	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.799	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.168	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/1:45:22,23:22:784:23:828:-61.0388,0,-57.336	0/1:28:9,19:9:324:19:684:-53.0376,0,-21.077	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:25:15,10:15:540:10:356:-24.5946,0,-41.4108	0/0:166:165,1:165:5912:1:36:0,-46.3727,-528.59	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.57	0/1:89:35,54:35:1248:54:1944:-147.634,0,-85.8332	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:8:2,6:2:72:6:216:-17.3542,0,-4.42848	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:186:108,78:108:3868:78:2800:-195.528,0,-292.323	0/0:232:232,0:232:8305:0:0:0,-69.839,-747.452	0/1:23:11,12:11:396:12:432:-31.9864,0,-29.0591	0/0:175:174,1:174:6240:1:36:0,-49.2258,-558.231	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.713	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:25:10,15:10:360:15:540:-41.3353,0,-25.2186	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:180:180,0:180:6452:0:0:0,-54.1854,-580.765	0/1:58:28,30:28:1000:30:1076:-79.4001,0,-72.8556	0/1:47:24,23:24:860:23:820:-59.6976,0,-63.5734	0/1:6:3,3:3:108:3:104:-7.88519,0,-8.26899	0/1:157:101,56:101:3620:56:2008:-133.216,0,-278.74	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5975	0/1:111:44,67:44:1576:67:2408:-182.571,0,-108.717	0/1:54:26,28:26:932:28:1004:-73.9812,0,-67.9432	0/0:51:51,0:51:1808:0:0:0,-15.3525,-162.999	0/0:94:93,1:93:3316:1:36:0,-24.6985,-295.06	0/0:119:119,0:119:4276:0:0:0,-35.8226,-384.992	0/0:132:132,0:132:4732:0:0:0,-39.736,-425.952	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.751	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.85	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.337	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4125	0/1:92:50,42:50:1777:42:1493:-106.638,0,-132.516	0/1:55:34,21:34:1220:21:752:-51.3024,0,-93.5325	0/1:12:7,5:7:252:5:180:-12.8981,0,-19.4166	0/1:136:70,66:70:2500:66:2364:-170.064,0,-183.992	0/0:41:41,0:41:1468:0:0:0,-12.3422,-131.052	0/1:14:7,7:7:252:7:248:-18.4439,0,-18.8145	0/1:7:4,3:4:140:3:108:-7.90807,0,-10.8374	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.967	0/1:77:37,39:37:1324:39:1396:-102.375,0,-96.2216	0/1:11:5,6:5:180:6:216:-16.4217,0,-13.2407	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.567	0/1:94:51,43:51:1832:43:1548:-110.312,0,-136.864	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.553	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/1:137:48,89:48:1728:89:3192:-245.707,0,-114.56	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2029	0/1:95:53,42:53:1896:42:1504:-106.513,0,-142.275	0/1:90:43,47:43:1544:47:1676:-123.286,0,-112.16	0/0:109:109,0:109:3896:0:0:0,-32.8123,-350.833	0/1:127:54,73:54:1940:73:2620:-197.3,0,-136.645	0/1:143:71,71:71:2540:71:2540:-184.445,0,-185.807	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.137	0/1:6:4,2:4:144:2:72:-4.82181,0,-11.5074	0/1:69:44,25:44:1580:25:900:-59.9447,0,-121.719	0/0:172:172,0:172:6180:0:0:0,-51.7772,-556.273	0/0:170:170,0:170:6068:0:0:0,-51.1751,-544.967	0/1:56:36,20:36:1296:20:716:-47.7829,0,-100.086	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.824	0/1:35:17,18:17:612:18:644:-47.7098,0,-44.8774	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.92	0/1:15:12,3:12:432:3:108:-5.53439,0,-34.7057	0/0:76:76,0:76:2723:0:0:0,-22.8783,-245.312	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/1:34:14,20:14:492:20:720:-54.6805,0,-34.3773	0/1:102:53,49:53:1889:49:1756:-127.335,0,-139.076	0/1:61:20,41:20:716:41:1476:-114.675,0,-46.4049	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.402	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.008
chr03	26579987	.	C	T	70137.6	PASS	AB=0.508829;ABP=7.15158;AC=40;AF=0.212766;AN=188;AO=3117;CIGAR=1X;DP=15491;DPB=15491;DPRA=0.910397;EPP=6762.81;EPPR=26842.4;GTI=0;LEN=1;MEANALT=1.06667;MQM=57.1046;MQMR=59.9508;NS=94;NUMALT=1;ODDS=6.53757;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109994;QR=434648;RO=12364;RPL=1382;RPP=89.8197;RPPR=324.043;RPR=1735;RUN=1;SAF=1383;SAP=88.8388;SAR=1734;SRF=5507;SRP=323.093;SRR=6857;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:29,51:29:1040:51:1792:-136.375,0,-69.832	0/0:145:145,0:145:5167:0:0:0,-43.6493,-465.173	0/1:347:111,236:111:3902:236:8282:-637.967,0,-246.917	0/0:249:249,0:249:8720:0:0:0,-74.9565,-784.796	0/0:76:76,0:76:2683:0:0:0,-22.8783,-241.714	0/0:86:86,0:86:3009:0:0:0,-25.8886,-271.042	0/1:196:94,102:94:3356:102:3630:-267.411,0,-243.256	0/0:344:343,0:343:12059:0:0:0,-103.253,-1084.24	0/0:194:194,0:194:6847:0:0:0,-58.3998,-616.104	0/1:164:74,90:74:2582:90:3183:-236.912,0,-183.257	0/0:127:127,0:127:4412:0:0:0,-38.2308,-397.26	0/0:182:182,0:182:6304:0:0:0,-54.7875,-567.456	0/0:115:115,0:115:4032:0:0:0,-34.6184,-363.071	0/0:145:145,0:145:5049:0:0:0,-43.6493,-454.565	0/0:113:113,0:113:3984:0:0:0,-34.0164,-358.754	0/1:98:54,44:54:1921:44:1564:-111.198,0,-143.663	0/1:190:94,96:94:3284:96:3344:-243.74,0,-238.585	0/0:97:97,0:97:3377:0:0:0,-29.1999,-304.149	0/1:71:33,38:33:1167:38:1356:-100.699,0,-83.9633	0/0:303:303,0:303:10723:0:0:0,-91.2121,-964.987	0/0:223:222,0:222:7862:0:0:0,-66.8287,-707.253	0/1:204:64,140:64:2260:140:4921:-380.958,0,-142.251	0/0:126:125,1:125:4389:1:36:0,-34.3315,-391.587	0/1:119:71,48:71:2515:48:1715:-118.785,0,-190.78	0/0:139:139,0:139:4869:0:0:0,-41.8432,-438.366	0/1:490:232,258:232:8224:258:9128:-673.797,0,-592.671	0/0:384:383,0:383:13579:0:0:0,-115.294,-1221.55	0/1:86:50,36:50:1762:36:1286:-89.9805,0,-132.973	0/0:336:336,0:336:11849:0:0:0,-101.146,-1066.27	0/0:206:204,0:204:7177:0:0:0,-61.4101,-645.653	0/0:209:209,0:209:7365:0:0:0,-62.9153,-662.897	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:28:13,15:13:468:15:528:-39.3554,0,-34.0308	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2452	0/0:418:418,0:418:14661:0:0:0,-125.831,-1319.26	0/1:197:114,83:114:4032:83:2932:-204.54,0,-303.767	0/1:100:59,41:59:2055:41:1457:-101.126,0,-155.116	0/1:10:7,3:7:239:3:104:-6.68107,0,-18.8324	0/1:310:165,143:165:5777:143:5064:-362.378,0,-426.974	0/0:50:50,0:50:1742:0:0:0,-15.0515,-157.059	0/1:223:98,125:98:3480:125:4400:-327.808,0,-246.282	0/1:134:82,51:82:2888:51:1808:-122.011,0,-219.849	0/0:150:150,0:150:5185:0:0:0,-45.1545,-466.791	0/0:155:155,0:155:5479:0:0:0,-46.6596,-493.24	0/0:260:260,0:260:9183:0:0:0,-78.2678,-825.322	0/0:276:276,0:276:9730:0:0:0,-83.0843,-875.654	0/0:143:143,0:143:5055:0:0:0,-43.0473,-455.097	0/0:250:250,0:250:8777:0:0:0,-75.2575,-789.929	0/0:164:164,0:164:5824:0:0:0,-49.3689,-524.218	0/0:16:16,0:16:549:0:0:0,-4.81648,-49.7315	0/1:172:93,79:93:3280:79:2798:-199.747,0,-243.644	0/1:100:58,42:58:2024:42:1485:-103.825,0,-152.325	0/1:15:9,6:9:320:6:212:-14.8728,0,-24.6269	0/1:194:115,79:115:4051:79:2747:-188.246,0,-306.056	0/0:92:92,0:92:3199:0:0:0,-27.6948,-287.507	0/1:19:7,12:7:248:12:432:-33.4952,0,-16.9446	0/1:14:8,6:8:284:6:212:-15.1525,0,-21.6889	0/0:110:110,0:110:3873:0:0:0,-33.1133,-348.762	0/1:190:97,93:97:3355:93:3255:-235.662,0,-244.968	0/1:19:8,11:8:279:11:392:-29.8435,0,-19.728	0/0:302:302,0:302:10634:0:0:0,-90.9111,-956.969	0/1:273:137,135:137:4759:135:4754:-345.571,0,-346.387	0/0:125:124,0:124:4382:0:0:0,-37.3277,-394.196	0/0:131:131,0:131:4650:0:0:0,-39.4349,-418.665	0/0:282:281,1:281:9920:1:36:0,-81.2922,-889.153	0/1:230:89,141:89:3143:141:4990:-379.645,0,-213.859	0/0:83:82,1:82:2839:1:36:0,-21.3872,-252.151	0/0:102:102,0:102:3587:0:0:0,-30.7051,-323.04	0/0:129:129,0:129:4501:0:0:0,-38.8329,-405.267	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.062	0/1:166:89,77:89:3052:77:2695:-192.552,0,-224.917	0/1:134:60,74:60:2113:74:2644:-197.336,0,-150.097	0/0:312:312,0:312:11085:0:0:0,-93.9214,-997.354	0/1:255:119,136:119:4170:136:4834:-358.041,0,-298.72	0/1:374:198,176:198:7007:176:6196:-444.21,0,-517.923	0/0:173:173,0:173:6116:0:0:0,-52.0782,-550.544	0/1:10:7,3:7:229:3:108:-6.86824,0,-17.9192	0/1:174:83,91:83:2940:91:3218:-237.374,0,-212.454	0/0:273:272,1:272:9628:1:32:0,-78.9819,-863.279	0/0:293:293,0:293:10319:0:0:0,-88.2018,-928.02	0/1:172:90,82:90:3113:82:2892:-208.685,0,-228.621	0/0:105:105,0:105:3669:0:0:0,-31.6081,-330.411	0/1:136:79,57:79:2775:57:2017:-140.827,0,-209.051	0/0:294:294,0:294:10228:0:0:0,-88.5028,-920.475	0/1:73:53,20:53:1866:20:693:-40.6945,0,-146.243	0/0:174:173,1:173:5973:1:36:0,-48.7809,-534.095	0/0:140:140,0:140:4881:0:0:0,-42.1442,-439.448	0/1:63:30,33:30:1051:33:1171:-86.5259,0,-75.9347	0/1:169:81,88:81:2760:88:3067:-225.101,0,-197.725	0/1:117:46,71:46:1591:71:2512:-191.029,0,-108.255	0/0:223:223,0:223:7876:0:0:0,-67.1297,-708.642	0/0:264:264,0:264:9222:0:0:0,-79.4719,-829.782
chr03	26601578	.	CA	CG	17817.4	PASS	AB=0.445273;ABP=69.3224;AC=39;AF=0.209677;AN=186;AO=1146;CIGAR=1M1X;DP=7094;DPB=7094;DPRA=0.817206;EPP=2491.52;EPPR=12502.7;GTI=4;LEN=1;MEANALT=1.12766;MQM=60;MQMR=59.9946;NS=93;NUMALT=1;ODDS=6.20839;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40800;QR=210186;RO=5931;RPL=1146;RPP=2491.52;RPPR=12502.7;RPR=0;RUN=1;SAF=1146;SAP=2491.52;SAR=0;SRF=5931;SRP=12882;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:42,25:42:1470:25:896:-60.7913,0,-112.422	0/0:48:48,0:48:1676:0:0:0,-14.4494,-151.122	0/1:74:40,34:40:1407:34:1215:-87.3795,0,-104.649	0/0:129:129,0:129:4530:0:0:0,-38.8329,-407.871	0/0:63:63,0:63:2214:0:0:0,-18.9649,-199.523	0/0:33:33,0:33:1186:0:0:0,-9.93399,-107.049	0/1:91:51,40:51:1815:40:1428:-101.424,0,-136.237	0/0:87:87,0:87:3081:0:0:0,-26.1896,-277.518	0/0:123:122,1:122:4328:1:32:0,-33.8274,-386.269	0/1:60:28,32:28:1002:32:1152:-85.9283,0,-72.4341	0/0:40:40,0:40:1434:0:0:0,-12.0412,-129.358	0/0:114:114,0:114:4042:0:0:0,-34.3174,-363.968	0/0:81:80,1:80:2850:1:36:0,-20.7852,-253.14	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/0:68:68,0:68:2437:0:0:0,-20.47,-219.585	0/1:52:27,25:27:959:25:892:-64.9461,0,-70.9715	0/1:35:21,14:21:752:14:483:-33.2612,0,-57.4702	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.051	0/1:20:8,11:8:288:11:388:-29.1786,0,-20.188	0/0:110:110,0:110:3905:0:0:0,-33.1133,-351.643	0/0:136:136,0:136:4832:0:0:0,-40.9401,-435.034	0/1:184:98,86:98:3463:86:3080:-222.039,0,-256.49	0/0:112:112,0:112:3954:0:0:0,-33.7154,-356.051	0/1:85:40,45:40:1412:45:1616:-120.142,0,-101.787	0/0:69:69,0:69:2444:0:0:0,-20.7711,-220.214	0/1:190:94,95:94:3316:95:3403:-249.229,0,-241.404	0/0:249:249,0:249:8818:0:0:0,-74.9565,-793.611	0/1:23:16,7:16:574:7:237:-14.7354,0,-45.0706	0/0:161:161,0:161:5747:0:0:0,-48.4658,-517.346	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.589	0/0:89:89,0:89:3154:0:0:0,-26.7917,-284.083	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9448	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:7:7,0:7:250:0:0:0,-2.10721,-22.8467	0/0:7:7,0:7:236:0:0:0,-2.10721,-21.5688	0/0:177:177,0:177:6316:0:0:0,-53.2823,-568.531	0/1:125:86,38:86:3007:38:1349:-84.0217,0,-233.173	0/1:30:15,15:15:527:15:532:-39.1822,0,-38.73	.:.:.:.:.:.:.:.	0/1:89:55,34:55:1968:34:1207:-82.1436,0,-150.604	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:122:81,40:81:2860:40:1431:-92.3024,0,-220.851	0/1:45:24,21:24:862:21:756:-54.8209,0,-64.356	0/0:38:37,0:37:1319:0:0:0,-11.1381,-118.651	0/0:115:115,0:115:4096:0:0:0,-34.6184,-368.825	0/0:71:71,0:71:2476:0:0:0,-21.3731,-223.092	0/0:162:161,0:161:5667:0:0:0,-48.4658,-509.793	0/0:80:80,0:80:2816:0:0:0,-24.0824,-253.677	0/0:71:70,1:70:2505:1:36:0,-17.7749,-222.103	0/0:116:116,0:116:4117:0:0:0,-34.9195,-370.716	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:61:28,33:28:980:33:1160:-86.3411,0,-70.1479	0/1:21:18,3:18:646:3:108:-3.75354,0,-52.1497	0/0:8:1,0:1:36:0:0:0,-0.30103,-3.23845	0/1:74:31,43:31:1107:43:1536:-116.257,0,-77.6648	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.501	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:19:9,10:9:311:10:352:-26.2986,0,-22.6039	0/0:63:63,0:63:2218:0:0:0,-18.9649,-199.882	0/1:121:74,47:74:2635:47:1645:-111.911,0,-200.972	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:122:119,3:119:4154:3:108:0,-26.6505,-363.97	0/1:144:88,54:88:3148:54:1910:-129.124,0,-240.494	0/0:55:55,0:55:1938:0:0:0,-16.5566,-174.693	0/0:57:56,1:56:1990:1:36:0,-13.5604,-175.775	0/0:147:146,1:146:5168:1:36:0,-40.6531,-461.663	0/1:72:36,36:36:1263:36:1292:-94.9096,0,-92.2949	0/0:33:32,1:32:1131:1:36:0,-6.33571,-98.4989	0/0:36:36,0:36:1268:0:0:0,-10.8371,-114.42	0/0:55:55,0:55:1956:0:0:0,-16.5566,-176.315	0/0:32:32,0:32:1124:0:0:0,-9.63296,-101.466	0/1:101:64,37:64:2279:37:1328:-89.4182,0,-174.956	0/1:70:41,29:41:1442:29:1044:-73.2027,0,-109.001	0/0:169:169,0:169:5970:0:0:0,-50.8741,-537.41	0/1:106:49,57:49:1745:57:2010:-149.261,0,-125.424	0/1:69:53,16:53:1869:16:567:-30.5897,0,-147.715	0/0:45:43,2:43:1542:2:72:0,-6.70963,-132.237	0/1:7:3,4:3:106:4:144:-11.2064,0,-7.78189	0/1:47:22,25:22:777:25:892:-66.4513,0,-56.103	0/0:148:148,0:148:5181:0:0:0,-44.5524,-466.434	0/0:254:252,0:252:8947:0:0:0,-75.8596,-804.854	0/1:89:47,42:47:1669:42:1487:-107.332,0,-123.705	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.513	0/1:39:22,17:22:792:17:595:-42.1365,0,-59.8655	0/0:125:125,0:125:4426:0:0:0,-37.6287,-398.512	0/1:30:11,19:11:396:19:676:-52.1371,0,-26.9518	0/0:88:88,0:88:3153:0:0:0,-26.4906,-283.994	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.501	0/1:30:18,12:18:637:12:432:-30.1903,0,-48.6263	0/1:82:40,42:40:1422:42:1487:-109.439,0,-103.592	0/1:57:23,34:23:815:34:1210:-92.0476,0,-56.5118	0/0:73:73,0:73:2589:0:0:0,-21.9752,-233.259	0/0:97:97,0:97:3450:0:0:0,-29.1999,-310.713
chr03	26601602	.	A	G	125091	PASS	AB=0.543748;ABP=44.6188;AC=146;AF=0.784946;AN=186;AO=5723;CIGAR=1X;DP=6877;DPB=6877;DPRA=0;EPP=12085.3;EPPR=2489.35;GTI=3;LEN=1;MEANALT=1.09677;MQM=59.996;MQMR=59.9921;NS=93;NUMALT=1;ODDS=3.89407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203295;QR=40886;RO=1145;RPL=5683;RPP=12085.3;RPPR=2489.35;RPR=40;RUN=1;SAF=5723;SAP=12430.3;SAR=0;SRF=1145;SRP=2489.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:24,41:24:864:41:1445:-110.777,0,-58.5156	1/1:45:0,45:0:0:45:1603:-144.559,-13.5464,0	0/1:72:34,38:34:1216:38:1332:-98.5029,0,-88.0724	1/1:124:0,124:0:0:124:4378:-394.199,-37.3277,0	1/1:60:0,60:0:0:60:2131:-192.058,-18.0618,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:85:37,48:37:1319:48:1712:-128.778,0,-93.4236	1/1:84:0,84:0:0:84:2955:-266.184,-25.2865,0	1/1:117:1,116:1:32:116:4110:-366.662,-32.0212,0	0/1:59:32,27:32:1144:27:967:-69.5865,0,-85.5087	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	1/1:111:0,111:0:0:111:3958:-356.411,-33.4143,0	1/1:77:1,76:1:36:76:2712:-240.726,-19.581,0	1/1:74:0,74:0:0:74:2630:-236.947,-22.2762,0	1/1:64:0,64:0:0:64:2280:-205.462,-19.2659,0	0/1:47:23,24:23:828:24:855:-63.1218,0,-60.6957	0/1:36:15,21:15:527:21:756:-57.5301,0,-36.9231	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:19:12,7:12:428:7:252:-17.3094,0,-33.1392	1/1:107:0,107:0:0:107:3811:-343.189,-32.2102,0	1/1:134:0,134:0:0:134:4779:-430.268,-40.338,0	0/1:186:89,97:89:3166:97:3433:-253.191,0,-229.169	1/1:110:0,110:0:0:110:3890:-350.294,-33.1133,0	0/1:82:44,38:44:1560:38:1360:-98.0161,0,-116.007	1/1:67:0,67:0:0:67:2388:-215.178,-20.169,0	0/1:187:93,94:93:3320:94:3347:-245.155,0,-242.726	1/1:240:0,240:0:0:240:8531:-767.794,-72.2472,0	0/1:23:7,16:7:252:16:567:-44.437,0,-16.1053	1/1:156:0,156:0:0:156:5551:-499.715,-46.9607,0	1/1:77:0,77:0:0:77:2747:-247.473,-23.1793,0	1/1:85:0,85:0:0:85:3023:-272.301,-25.5876,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:175:0,175:0:0:175:6177:-556.034,-52.6803,0	0/1:120:39,81:39:1396:81:2883:-223.582,0,-89.8155	0/1:30:15,15:15:540:15:517:-37.8237,0,-39.9056	.:.:.:.:.:.:.:.	0/1:90:35,55:35:1248:55:1932:-147.061,0,-85.5322	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	0/1:118:42,76:42:1500:76:2700:-207.724,0,-99.773	0/1:44:21,23:21:744:23:816:-60.5164,0,-54.039	1/1:36:0,35:0:0:35:1248:-112.411,-10.5361,0	1/1:107:0,107:0:0:107:3802:-342.379,-32.2102,0	1/1:67:0,67:0:0:67:2370:-213.558,-20.169,0	1/1:157:0,157:0:0:157:5576:-501.966,-47.2617,0	1/1:74:0,74:0:0:74:2618:-235.868,-22.2762,0	1/1:68:1,67:1:36:67:2396:-212.299,-16.8718,0	1/1:109:0,109:0:0:109:3877:-349.125,-32.8123,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:58:31,27:31:1096:27:963:-69.5262,0,-81.4902	0/1:22:4,18:4:140:18:640:-51.3067,0,-6.32192	0/1:8:7,1:7:244:1:36:-1.19004,0,-19.8912	0/1:73:42,31:42:1487:31:1086:-76.0724,0,-112.149	1/1:41:0,41:0:0:41:1457:-131.424,-12.3422,0	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:19:10,9:10:356:9:320:-23.4228,0,-26.6617	1/1:62:0,61:0:0:61:2144:-192.866,-18.3628,0	0/1:117:48,68:48:1724:68:2414:-182.236,0,-120.166	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:114:1,113:1:36:113:4012:-357.674,-30.7191,0	0/1:141:55,86:55:1976:86:3033:-230.756,0,-135.669	1/1:48:0,48:0:0:48:1707:-153.915,-14.4494,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	1/1:144:0,144:0:0:144:5098:-458.966,-43.3483,0	0/1:70:36,34:36:1292:34:1207:-87.8632,0,-95.5117	1/1:30:0,30:0:0:30:1059:-95.6204,-9.0309,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:32:0,32:0:0:32:1136:-102.549,-9.63296,0	0/1:99:37,62:37:1328:62:2191:-167.654,0,-90.0203	0/1:68:30,37:30:1080:37:1308:-97.4928,0,-76.9844	1/1:164:0,164:0:0:164:5844:-526.073,-49.3689,0	0/1:106:57,49:57:2023:49:1752:-126.055,0,-150.433	0/1:67:14,53:14:500:53:1881:-149.397,0,-25.1672	1/1:44:2,42:2:72:42:1512:-129.538,-6.4086,0	0/1:6:4,1:4:144:1:32:-1.35428,0,-11.4486	0/1:48:26,22:26:916:22:771:-55.2609,0,-68.307	1/1:145:0,144:0:0:144:5138:-462.203,-43.3483,0	1/1:244:0,243:0:0:243:8645:-777.687,-73.1503,0	0/1:88:42,46:42:1508:46:1626:-120.137,0,-109.524	1/1:48:0,47:0:0:47:1671:-150.317,-14.1484,0	0/1:36:14,22:14:504:22:792:-60.7686,0,-34.861	1/1:124:0,124:0:0:124:4415:-397.524,-37.3277,0	0/1:30:19,11:19:676:11:392:-26.5892,0,-52.1371	1/1:87:0,87:0:0:87:3102:-279.407,-26.1896,0	1/1:70:0,70:0:0:70:2498:-225.071,-21.0721,0	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/1:80:42,38:42:1512:38:1352:-97.898,0,-112.292	0/1:57:34,23:34:1220:23:811:-56.1513,0,-92.9481	1/1:72:0,71:0:0:71:2535:-228.13,-21.3731,0	1/1:91:0,91:0:0:91:3189:-287.234,-27.3937,0
chr03	26601751	.	C	G	18469.2	PASS	AB=0.452595;ABP=53.0389;AC=43;AF=0.228723;AN=188;AO=1169;CIGAR=1X;DP=6833;DPB=6833;DPRA=0.810136;EPP=2541.46;EPPR=12289.2;GTI=3;LEN=1;MEANALT=1.06667;MQM=59.994;MQMR=60;NS=94;NUMALT=1;ODDS=0.576654;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41799;QR=202339;RO=5658;RPL=1169;RPP=2541.46;RPPR=12289.2;RPR=0;RUN=1;SAF=0;SAP=2541.46;SAR=1169;SRF=0;SRP=12289.2;SRR=5658;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:38,13:38:1364:13:468:-27.1071,0,-107.708	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/1:109:56,53:56:2012:53:1882:-136.843,0,-148.541	0/0:221:221,0:221:7883:0:0:0,-66.5276,-709.494	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:37:12,25:12:428:25:900:-70.1829,0,-27.7207	0/0:96:96,0:96:3421:0:0:0,-28.8989,-308.103	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:40:20,20:20:720:20:716:-52.7265,0,-53.0876	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:79:44,35:44:1584:35:1260:-89.9241,0,-119.07	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:55:35,20:35:1256:20:720:-48.5721,0,-96.7886	0/1:91:33,58:33:1184:58:2049:-157.286,0,-79.4746	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:139:139,0:139:4976:0:0:0,-41.8432,-447.989	0/1:65:28,37:28:1004:37:1328:-100.255,0,-71.1089	0/0:66:66,0:66:2345:0:0:0,-19.868,-211.308	0/1:31:19,12:19:684:12:424:-29.1639,0,-52.5584	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:214:132,81:132:4709:81:2892:-196.038,0,-359.49	0/0:165:165,0:165:5916:0:0:0,-49.6699,-532.548	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	0/0:289:289,0:289:10323:0:0:0,-86.9977,-928.991	0/0:110:110,0:110:3918:0:0:0,-33.1133,-352.811	0/0:140:139,1:139:4954:1:36:0,-38.5459,-442.41	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.565	0/1:71:43,28:43:1548:28:1008:-69.6632,0,-118.24	0/1:21:12,9:12:428:9:324:-23.1842,0,-32.5372	1/1:3:0,3:0:0:3:104:-9.7009,-0.90309,0	0/1:104:62,42:62:2209:42:1508:-104.707,0,-167.766	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:122:68,54:68:2428:54:1940:-138.151,0,-182.05	0/1:29:18,11:18:648:11:396:-27.2529,0,-49.922	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:83:83,0:83:2923:0:0:0,-24.9855,-263.302	0/0:95:95,0:95:3374:0:0:0,-28.5978,-303.874	0/0:186:186,0:186:6647:0:0:0,-55.9916,-598.304	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:89:89,0:89:3189:0:0:0,-26.7917,-287.231	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:95:55,40:55:1980:40:1436:-100.94,0,-149.877	0/1:64:42,22:42:1489:22:777:-50.9844,0,-115.037	0/1:11:6,5:6:201:5:176:-12.8737,0,-15.1057	0/1:120:62,58:62:2213:58:2069:-150.357,0,-163.309	0/0:40:39,0:39:1385:0:0:0,-11.7402,-124.587	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.441	0/1:79:41,38:41:1472:38:1364:-99.2793,0,-108.995	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:200:200,0:200:7173:0:0:0,-60.206,-645.622	0/1:53:35,18:35:1256:18:644:-42.336,0,-97.3907	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:125:123,0:123:4394:0:0:0,-37.0267,-395.27	0/0:132:128,3:128:4584:3:100:0,-30.4582,-403.388	0/1:51:22,29:22:792:29:1032:-77.8409,0,-56.2531	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:23:23,0:23:798:0:0:0,-6.92369,-72.1341	0/1:83:44,39:44:1584:39:1400:-101.313,0,-117.866	0/1:43:18,25:18:644:25:900:-68.3767,0,-45.3463	0/0:77:75,2:75:2665:2:72:0,-16.3426,-233.258	0/1:180:92,88:92:3289:88:3151:-229.63,0,-242.042	0/1:205:115,90:115:4121:90:3220:-228.311,0,-309.361	0/0:100:100,0:100:3577:0:0:0,-30.103,-322.136	0/1:16:4,12:4:140:12:413:-32.6822,0,-8.1281	0/1:93:59,33:59:2124:33:1184:-78.8138,0,-163.374	0/0:128:128,0:128:4589:0:0:0,-38.5318,-413.172	0/0:106:106,0:106:3777:0:0:0,-31.9092,-340.129	0/1:46:26,20:26:928:20:712:-50.5593,0,-69.9909	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:36:20,16:20:716:16:576:-41.3379,0,-53.9306	0/1:78:45,33:45:1593:33:1175:-82.5766,0,-120.178	0/1:55:16,39:16:572:39:1391:-108.931,0,-35.2568	0/0:141:141,0:141:5030:0:0:0,-42.4452,-452.844	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981
chr03	26788059	.	C	T	165074	PASS	AB=0.426314;ABP=194.058;AC=136;AF=0.723404;AN=188;AO=6361;CIGAR=1X;DP=9503;DPB=9503;DPRA=0;EPP=6.09119;EPPR=1905.27;GTI=4;LEN=1;MEANALT=1.04255;MQM=59.9217;MQMR=59.5137;NS=94;NUMALT=1;ODDS=0.00510798;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220273;QR=109848;RO=3138;RPL=6361;RPP=13815.7;RPPR=6808.41;RPR=0;RUN=1;SAF=3228;SAP=6.09119;SAR=3133;SRF=739;SRP=1909.86;SRR=2399;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:23,21:23:798:21:700:-50.0656,0,-58.8798	0/1:111:62,49:62:2140:49:1704:-120.228,0,-159.39	0/1:125:58,67:58:1899:67:2320:-171.432,0,-133.52	1/1:128:2,126:2:72:126:4276:-378.191,-31.6951,0	1/1:46:0,46:0:0:46:1575:-142.036,-13.8474,0	1/1:44:0,44:0:0:44:1447:-130.513,-13.2453,0	0/1:72:39,33:39:1317:33:1126:-79.9377,0,-97.1445	1/1:107:0,107:0:0:107:3686:-331.947,-32.2102,0	1/1:75:0,75:0:0:75:2555:-230.199,-22.5773,0	0/1:54:23,31:23:755:31:1095:-82.6035,0,-51.9927	0/1:214:158,56:158:5588:56:1968:-112.974,0,-438.586	0/1:126:55,71:55:1896:71:2455:-183.275,0,-132.969	1/1:164:0,164:0:0:164:5744:-517.028,-49.3689,0	1/1:128:0,128:0:0:128:4386:-394.926,-38.5318,0	1/1:138:0,138:0:0:138:4845:-436.018,-41.5421,0	0/1:108:55,52:55:1928:52:1840:-133.458,0,-141.33	0/1:126:53,73:53:1768:73:2525:-189.379,0,-121.347	1/1:130:0,130:0:0:130:4539:-408.481,-39.1339,0	0/1:168:114,54:114:3995:54:1880:-118.904,0,-309.038	1/1:131:1,130:1:36:130:4515:-402.927,-35.8367,0	1/1:89:0,89:0:0:89:3060:-275.631,-26.7917,0	0/1:34:19,15:19:648:15:528:-37.6163,0,-48.4021	1/1:57:0,57:0:0:57:1966:-177.212,-17.1587,0	0/1:93:42,51:42:1478:51:1783:-132.756,0,-104.794	1/1:53:0,53:0:0:53:1857:-167.408,-15.9546,0	0/1:146:85,61:85:2868:61:2132:-148.196,0,-214.362	1/1:127:1,126:1:36:126:4359:-388.895,-34.6325,0	0/1:53:23,30:23:812:30:1054:-79.2142,0,-57.4347	1/1:98:0,98:0:0:98:3380:-304.414,-29.5009,0	1/1:38:0,38:0:0:38:1331:-120.089,-11.4391,0	1/1:60:0,60:0:0:60:2052:-184.84,-18.0618,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/0:139:130,8:130:4653:8:268:0,-17.3188,-394.309	0/0:177:176,1:176:6219:1:36:0,-49.684,-556.142	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:240:-21.9347,-2.10721,0	1/1:328:0,328:0:0:328:11381:-1023.97,-98.7378,0	0/1:51:28,23:28:1000:23:794:-56.4233,0,-74.9582	0/1:218:167,51:167:5891:51:1781:-94.9284,0,-464.563	0/0:81:80,1:80:2819:1:36:0,-20.7852,-250.32	0/1:94:47,47:47:1624:47:1622:-117.969,0,-118.134	1/1:92:0,92:0:0:92:3218:-289.713,-27.6948,0	0/1:116:67,49:67:2363:49:1696:-118.002,0,-177.993	0/1:166:87,79:87:3000:79:2729:-195.886,0,-220.236	1/1:122:0,122:0:0:122:4213:-379.356,-36.7257,0	1/1:51:0,51:0:0:51:1736:-156.518,-15.3525,0	1/1:60:0,60:0:0:60:2073:-186.839,-18.0618,0	1/1:95:0,95:0:0:95:3288:-296.141,-28.5979,0	1/1:62:0,62:0:0:62:2138:-192.686,-18.6639,0	1/1:82:0,82:0:0:82:2754:-248.102,-24.6845,0	1/1:91:0,91:0:0:91:3121:-281.121,-27.3937,0	0/1:12:2,10:2:72:10:328:-26.2247,0,-3.22436	0/1:84:45,39:45:1567:39:1332:-94.8884,0,-116.026	0/1:25:9,16:9:307:16:541:-41.4836,0,-20.4312	0/1:57:51,6:51:1816:6:193:-0.526904,0,-146.328	0/1:50:23,27:23:789:27:909:-67.0276,0,-56.1922	1/1:27:0,27:0:0:27:948:-85.6346,-8.12781,0	0/0:80:78,2:78:2792:2:72:0,-17.2457,-244.68	0/0:128:121,6:121:4340:6:206:0,-19.7118,-371.882	1/1:52:0,52:0:0:52:1788:-161.2,-15.6536,0	0/1:113:60,53:60:2091:53:1833:-131.229,0,-154.419	0/0:98:95,3:95:3378:3:108:0,-19.4258,-294.146	1/1:65:0,65:0:0:65:2240:-201.86,-19.567,0	0/1:111:63,48:63:2183:48:1696:-119.512,0,-163.318	1/1:50:0,50:0:0:50:1707:-153.909,-15.0515,0	1/1:65:2,63:2:72:63:2182:-189.807,-12.7307,0	1/1:84:1,83:1:32:83:2894:-257.498,-22.0872,0	0/1:52:37,15:37:1301:15:508:-30.3864,0,-101.106	1/1:58:0,58:0:0:58:2014:-181.533,-17.4597,0	1/1:56:0,56:0:0:56:1925:-173.512,-16.8577,0	1/1:176:0,176:0:0:176:6145:-553.155,-52.9813,0	1/1:19:1,18:1:36:18:628:-53.2498,-2.12389,0	0/1:37:20,17:20:685:17:589:-42.1952,0,-50.8176	0/1:42:15,27:15:515:27:947:-72.9005,0,-34.0051	1/1:105:0,105:0:0:105:3541:-318.71,-31.6082,0	0/1:79:33,46:33:1160:46:1597:-120.229,0,-80.9027	0/1:104:51,53:51:1743:53:1850:-135.467,0,-125.826	1/1:80:0,80:0:0:80:2750:-247.746,-24.0824,0	0/0:126:123,2:123:4409:2:68:0,-31.5236,-390.49	0/1:91:47,44:47:1612:44:1541:-111.558,0,-117.942	1/1:85:0,85:0:0:85:2927:-263.639,-25.5876,0	1/1:156:0,156:0:0:156:5454:-490.973,-46.9607,0	0/1:147:68,79:68:2353:79:2780:-206.185,0,-167.71	1/1:117:1,116:1:36:116:4036:-359.837,-31.6222,0	0/1:223:114,109:114:3942:109:3717:-267.607,0,-287.787	1/1:216:0,216:0:0:216:7527:-677.493,-65.0225,0	0/1:76:34,42:34:1163:42:1438:-106.832,0,-82.0731	1/1:150:0,150:0:0:150:5224:-470.311,-45.1545,0	1/1:118:2,116:2:72:116:4092:-361.502,-28.6848,0	0/1:221:169,52:169:6010:52:1779:-93.8591,0,-474.459	0/1:265:179,86:179:6293:86:2985:-189.111,0,-486.471	0/1:143:98,45:98:3444:45:1600:-101.243,0,-267.12	1/1:80:0,80:0:0:80:2702:-243.419,-24.0824,0	1/1:249:1,248:1:32:248:8697:-779.544,-71.7572,0
chr03	26897051	.	A	G	112197	PASS	AB=0.491083;ABP=4.59805;AC=142;AF=0.755319;AN=188;AO=5239;CIGAR=1X;DP=6439;DPB=6439;DPRA=19.0341;EPP=11379.4;EPPR=2600.09;GTI=5;LEN=1;MEANALT=1.04444;MQM=59.9876;MQMR=60;NS=94;NUMALT=1;ODDS=3.27542;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185887;QR=42846;RO=1196;RPL=5239;RPP=11379.4;RPPR=2600.09;RPR=0;RUN=1;SAF=5239;SAP=11379.4;SAR=0;SRF=1196;SRP=2600.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:20,24:20:712:24:856:-64.1158,0,-51.1613	0/1:54:27,27:27:972:27:964:-70.8212,0,-71.5423	0/1:93:40,53:40:1436:53:1891:-142.472,0,-101.542	1/1:147:0,147:0:0:147:5222:-470.12,-44.2514,0	1/1:38:0,38:0:0:38:1345:-121.349,-11.4391,0	1/1:41:0,41:0:0:41:1458:-131.516,-12.3422,0	0/1:42:25,17:25:891:17:608:-42.4088,0,-67.8655	1/1:87:0,87:0:0:87:3112:-280.307,-26.1896,0	1/1:123:0,123:0:0:123:4377:-394.105,-37.0267,0	0/1:53:32,21:32:1143:21:736:-50.6078,0,-87.2241	0/1:34:24,10:24:864:10:343:-20.9655,0,-67.8475	0/1:90:40,50:40:1432:50:1760:-131.588,0,-102.085	1/1:54:0,54:0:0:54:1877:-169.205,-16.2556,0	1/1:102:0,102:0:0:102:3616:-325.646,-30.7051,0	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:49:24,25:24:864:25:896:-66.2099,0,-63.3321	0/1:27:12,15:12:424:15:529:-39.8128,0,-30.3686	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	1/1:117:0,117:0:0:117:4140:-372.786,-35.2205,0	1/1:129:1,128:1:36:128:4490:-400.674,-35.2346,0	0/1:95:59,36:59:2120:36:1283:-87.1748,0,-162.471	1/1:141:1,140:1:27:140:4996:-447.087,-39.7454,0	0/1:40:25,15:25:896:15:529:-35.8994,0,-68.9192	1/1:56:1,55:1:36:55:1963:-173.346,-13.2594,0	0/1:175:88,87:88:3164:87:3076:-224.387,0,-232.303	1/1:184:0,183:0:0:183:6508:-585.446,-55.0885,0	0/1:21:9,12:9:315:12:415:-31.3578,0,-22.3656	1/1:178:0,178:0:0:178:6322:-569.072,-53.5833,0	1/1:54:0,54:0:0:54:1883:-169.745,-16.2556,0	1/1:120:0,120:0:0:120:4270:-384.478,-36.1236,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:10:5,5:5:180:5:171:-12.7152,0,-13.5418	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:1:0,1:0:0:1:21:-2.09995,-0.30103,0	1/1:135:0,135:0:0:135:4696:-422.807,-40.6391,0	0/1:84:41,43:41:1472:43:1540:-113.607,0,-107.49	0/1:30:15,15:15:536:15:532:-39.1822,0,-39.5439	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:52:19,33:19:680:33:1176:-90.4942,0,-45.8756	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:91:42,49:42:1512:49:1756:-130.93,0,-108.981	0/1:39:20,19:20:720:19:680:-49.789,0,-53.3886	1/1:52:0,52:0:0:52:1838:-165.699,-15.6536,0	1/1:93:1,92:1:36:92:3247:-288.852,-24.3975,0	1/1:83:1,82:1:36:82:2926:-259.975,-21.3872,0	1/1:111:0,110:0:0:110:3901:-350.923,-33.1133,0	1/1:49:0,49:0:0:49:1705:-153.73,-14.7505,0	1/1:43:1,42:1:36:42:1496:-131.336,-9.34602,0	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:80:31,48:31:1112:48:1712:-130.225,0,-76.2502	0/1:38:15,23:15:536:23:824:-63.0442,0,-37.1357	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:77:18,59:18:648:59:2108:-166.81,0,-35.4726	1/1:57:2,55:2:72:55:1935:-167.587,-10.322,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:74:0,74:0:0:74:2631:-237.037,-22.2762,0	0/1:91:45,46:45:1612:46:1635:-120.044,0,-117.976	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:115:0,115:0:0:115:4115:-370.534,-34.6185,0	0/1:116:70,46:70:2508:46:1639:-112.878,0,-191.053	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:68:0,68:0:0:68:2416:-217.694,-20.47,0	1/1:161:0,160:0:0:160:5709:-513.568,-48.1648,0	0/1:100:71,29:71:2548:29:1040:-63.8114,0,-199.467	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:34:0,34:0:0:34:1206:-108.844,-10.235,0	1/1:38:1,37:1:36:37:1315:-115.053,-7.84087,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:93:56,37:56:2004:37:1316:-90.746,0,-152.638	0/1:70:43,27:43:1540:27:949:-64.6507,0,-117.821	1/1:471:0,471:0:0:471:16757:-1507.79,-141.785,0	0/1:101:42,59:42:1495:59:2086:-157.603,0,-104.44	0/1:70:19,51:19:680:51:1796:-140.844,0,-40.4571	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:33:19,14:19:680:14:504:-35.7641,0,-51.5952	1/1:61:2,59:2:68:59:2093:-182.181,-11.9051,0	1/1:212:0,212:0:0:212:7567:-681.069,-63.8184,0	0/1:47:33,14:33:1188:14:481:-29.4667,0,-93.0802	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:40:16,24:16:563:24:841:-63.966,0,-38.958	1/1:108:0,108:0:0:108:3827:-344.137,-32.5112,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:57:0,57:0:0:57:2011:-181.262,-17.1587,0	1/1:43:0,43:0:0:43:1531:-138.082,-12.9443,0	0/1:28:17,11:17:608:11:396:-27.5539,0,-46.6232	0/1:92:50,42:50:1788:42:1463:-104.266,0,-133.508	0/1:55:37,18:37:1324:18:640:-41.3721,0,-102.905	1/1:100:0,100:0:0:100:3544:-319.169,-30.103,0	1/1:69:1,68:1:36:68:2364:-209.417,-17.1728,0
chr03	26900843	.	C	G	35964.5	PASS	AB=0.559968;ABP=118.644;AC=43;AF=0.228723;AN=188;AO=2079;CIGAR=1X;DP=8714;DPB=8714;DPRA=0.967487;EPP=4517.5;EPPR=14391.2;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9962;MQMR=59.9926;NS=94;NUMALT=1;ODDS=1.52369;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73972;QR=236908;RO=6630;RPL=2079;RPP=4517.5;RPPR=14391.2;RPR=0;RUN=1;SAF=0;SAP=4517.5;SAR=2079;SRF=0;SRP=14399.9;SRR=6630;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:6,18:6:212:18:636:-50.3433,0,-12.2001	0/1:174:98,76:98:3512:76:2703:-191.135,0,-263.911	0/1:99:44,55:44:1561:55:1956:-146.514,0,-110.978	0/0:224:224,0:224:7978:0:0:0,-67.4307,-718.042	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:100:54,46:54:1932:46:1627:-116.616,0,-144.054	0/0:171:171,0:171:6084:0:0:0,-51.4761,-547.664	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:40:18,22:18:640:22:792:-59.5645,0,-45.8881	0/1:55:29,26:29:1044:26:910:-65.6574,0,-77.7182	0/1:70:35,35:35:1256:35:1235:-90.3808,0,-92.2732	0/0:69:69,0:69:2458:0:0:0,-20.7711,-221.474	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:57:25,32:25:900:32:1148:-86.4711,0,-64.1623	0/1:68:36,32:36:1292:32:1140:-82.4392,0,-96.1137	0/0:64:62,2:62:2219:2:72:0,-12.4292,-193.137	0/1:38:23,15:23:828:15:540:-37.4974,0,-63.405	0/0:174:174,0:174:6209:0:0:0,-52.3792,-558.907	0/0:187:187,0:187:6692:0:0:0,-56.2926,-602.357	0/1:123:33,89:33:1176:89:3156:-247.18,0,-69.0624	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:113:49,64:49:1756:64:2271:-170.636,0,-124.308	0/0:49:48,0:48:1728:0:0:0,-14.4494,-155.441	0/1:402:171,231:171:6136:231:8237:-620.329,0,-431.324	0/0:176:176,0:176:6305:0:0:0,-52.9813,-567.223	0/1:31:13,18:13:455:18:627:-47.4225,0,-31.95	0/0:223:223,0:223:7972:0:0:0,-67.1297,-717.501	0/0:113:113,0:113:4027:0:0:0,-34.0164,-362.62	0/0:188:187,0:187:6696:0:0:0,-56.2926,-602.356	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:206:206,0:206:7366:0:0:0,-62.0122,-662.988	0/1:224:106,118:106:3804:118:4211:-311.741,0,-275.126	0/1:49:19,30:19:684:30:1054:-80.4187,0,-47.1399	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:80:40,40:40:1432:40:1424:-104.375,0,-105.095	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:113:39,74:39:1376:74:2631:-203.021,0,-90.1195	0/1:66:26,40:26:924:40:1421:-108.318,0,-63.6097	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:85:85,0:85:3033:0:0:0,-25.5875,-273.199	0/0:96:96,0:96:3421:0:0:0,-28.8989,-308.103	0/0:191:191,0:191:6799:0:0:0,-57.4967,-611.981	0/0:129:129,0:129:4624:0:0:0,-38.8329,-416.323	0/0:153:153,0:153:5484:0:0:0,-46.0576,-493.686	0/0:155:155,0:155:5552:0:0:0,-46.6596,-499.804	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:95:44,51:44:1580:51:1816:-135.124,0,-113.894	0/1:38:14,24:14:500:24:860:-66.2827,0,-33.897	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:133:60,73:60:2121:73:2579:-192.324,0,-151.12	0/0:33:32,0:32:1152:0:0:0,-9.63296,-103.63	0/1:12:3,9:3:108:9:312:-24.803,0,-6.46281	0/1:17:3,14:3:104:14:500:-40.2187,0,-4.5853	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:91:38,53:38:1360:53:1908:-144.604,0,-95.3069	0/1:5:1,4:1:36:4:132:-10.7013,0,-2.09312	0/0:236:235,0:235:8414:0:0:0,-70.742,-756.9	0/1:235:84,151:84:3000:151:5391:-414.579,0,-199.49	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/0:65:65,0:65:2304:0:0:0,-19.5669,-207.622	0/0:140:140,0:140:5024:0:0:0,-42.1442,-452.305	0/1:85:26,59:26:932:59:2124:-165.841,0,-58.6113	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.116	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:84:48,36:48:1712:36:1288:-90.9371,0,-129.079	0/1:78:44,34:44:1571:34:1212:-85.906,0,-118.201	0/0:199:197,2:197:7020:2:72:0,-53.0682,-624.999	0/1:189:74,115:74:2648:115:4107:-312.921,0,-181.672	0/1:109:34,75:34:1209:75:2660:-206.832,0,-76.3019	0/0:128:128,0:128:4517:0:0:0,-38.5318,-406.7	0/1:15:9,6:9:316:6:216:-15.2751,0,-24.2634	0/1:123:53,70:53:1896:70:2508:-188.946,0,-133.891	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/0:164:163,1:163:5824:1:36:0,-45.7706,-520.676	0/1:77:51,26:51:1824:26:923:-60.2075,0,-141.262	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:137:62,75:62:2199:75:2629:-195.614,0,-156.933	0/0:156:155,1:155:5513:1:36:0,-43.3624,-492.7	0/1:32:13,19:13:468:19:684:-52.2574,0,-32.8267	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/1:34:12,22:12:428:22:780:-60.288,0,-28.6238	0/1:67:38,29:38:1355:29:1023:-72.2127,0,-102.081	0/1:74:27,47:27:964:47:1665:-127.859,0,-64.8006	0/0:131:131,0:131:4675:0:0:0,-39.4349,-420.912	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.249
chr03	26903619	.	G	T	18134.6	PASS	AB=0.434493;ABP=103.721;AC=45;AF=0.239362;AN=188;AO=1185;CIGAR=1X;DP=6987;DPB=6987;DPRA=0.894476;EPP=2576.21;EPPR=12586.7;GTI=4;LEN=1;MEANALT=1.06;MQM=59.9536;MQMR=59.991;NS=94;NUMALT=1;ODDS=1.13014;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42218;QR=206958;RO=5799;RPL=1185;RPP=2576.21;RPPR=12578;RPR=0;RUN=1;SAF=1185;SAP=2576.21;SAR=0;SRF=5798;SRP=12586.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:71:38,33:38:1359:33:1169:-84.1422,0,-101.237	0/1:79:61,18:61:2152:18:644:-34.5092,0,-170.164	0/0:220:220,0:220:7882:0:0:0,-66.2266,-709.401	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:77:54,23:54:1914:23:807:-49.7699,0,-149.087	0/0:105:104,1:104:3721:1:36:0,-28.0099,-331.49	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:45:32,13:32:1140:13:460:-28.189,0,-89.3629	0/1:65:27,38:27:959:38:1355:-102.683,0,-67.0584	0/1:65:32,33:32:1129:33:1175:-86.4875,0,-82.3494	0/0:75:75,0:75:2665:0:0:0,-22.5772,-240.095	0/0:84:84,0:84:2994:0:0:0,-25.2865,-269.691	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:66:39,27:39:1383:27:960:-66.8483,0,-104.9	0/1:47:22,25:22:784:25:891:-66.3604,0,-56.7355	0/0:39:39,0:39:1379:0:0:0,-11.7402,-124.408	0/1:40:20,20:20:720:20:705:-51.7316,0,-53.0876	0/0:120:119,1:119:4268:1:36:0,-32.5253,-380.699	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:74:25,49:25:896:49:1760:-136.408,0,-58.6841	0/0:122:122,0:122:4361:0:0:0,-36.7257,-392.663	0/1:23:13,10:13:468:10:315:-21.7302,0,-35.536	0/0:53:53,0:53:1864:0:0:0,-15.9546,-168.037	0/1:94:58,36:58:2080:36:1279:-87.1153,0,-159.173	0/0:150:150,0:150:5363:0:0:0,-45.1545,-482.802	0/1:27:12,15:12:432:15:536:-40.447,0,-31.0934	0/0:180:180,0:180:6438:0:0:0,-54.1854,-579.504	0/0:247:245,2:245:8744:2:72:0,-67.5177,-780.111	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	1/1:2:0,1:0:0:1:36:-3.2584,-0.30103,0	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.502	0/0:173:173,0:173:6164:0:0:0,-52.0782,-554.86	0/1:70:48,22:48:1692:22:792:-50.5336,0,-131.491	0/1:51:19,31:19:680:31:1108:-84.6197,0,-46.1179	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:133:57,75:57:2040:75:2685:-201.769,0,-143.776	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:62:44,18:44:1584:18:639:-39.1744,0,-124.188	0/1:44:18,26:18:648:26:927:-70.502,0,-45.4066	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/0:72:72,0:72:2583:0:0:0,-21.6742,-232.718	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:140:140,0:140:4994:0:0:0,-42.1442,-449.606	0/0:75:75,0:75:2652:0:0:0,-22.5772,-238.925	0/0:131:131,0:131:4665:0:0:0,-39.4349,-419.94	0/0:103:103,0:103:3695:0:0:0,-31.0061,-332.751	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:83:69,14:69:2476:14:504:-20.7126,0,-198.108	0/1:112:54,58:54:1940:58:2080:-153.755,0,-141.161	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:84:49,35:49:1741:35:1247:-87.2476,0,-131.686	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/0:113:113,0:113:4031:0:0:0,-34.0164,-362.979	0/1:98:49,49:49:1732:49:1749:-128.193,0,-126.661	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:147:147,0:147:5256:0:0:0,-44.2514,-473.178	0/1:91:78,13:78:2787:13:452:-13.6151,0,-223.676	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:53:53,0:53:1862:0:0:0,-15.9546,-167.856	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:224:101,123:101:3593:123:4403:-329.011,0,-256.146	0/0:53:53,0:53:1876:0:0:0,-15.9546,-169.116	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:45:45,0:45:1585:0:0:0,-13.5463,-142.938	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/1:118:88,30:88:3137:30:1053:-59.5564,0,-247.033	0/1:50:36,14:36:1288:14:481:-28.5636,0,-101.172	0/0:170:170,0:170:6100:0:0:0,-51.1751,-549.099	0/1:96:80,16:80:2876:16:572:-22.9145,0,-230.177	0/1:70:40,30:40:1440:30:1080:-76.4412,0,-108.826	0/0:121:119,2:119:4246:2:68:0,-29.9669,-375.862	0/1:14:10,4:10:330:4:144:-9.0992,0,-25.8029	0/1:58:47,11:47:1688:11:396:-18.523,0,-134.747	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/0:151:151,0:151:5384:0:0:0,-45.4555,-484.691	0/1:49:21,28:21:744:28:984:-74.1202,0,-52.5339	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/1:34:12,22:12:432:22:778:-60.1058,0,-28.9862	0/0:102:99,3:99:3502:3:108:0,-20.6299,-305.318	0/1:28:6,22:6:216:22:788:-62.816,0,-11.3617	0/0:71:71,0:71:2513:0:0:0,-21.3731,-226.421	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/1:74:28,46:28:1004:46:1637:-125.34,0,-68.3996	0/1:160:78,82:78:2780:82:2939:-216.577,0,-202.277	0/1:48:21,27:21:732:27:972:-73.3485,0,-51.7492	0/0:123:122,1:122:4380:1:28:0,-34.2301,-391.576	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37
chr03	27109434	.	G	A	166225	PASS	AB=0.496397;ABP=3.43277;AC=144;AF=0.765957;AN=188;AO=7179;CIGAR=1X;DP=9076;DPB=9076;DPRA=32.5197;EPP=12778.7;EPPR=4083.28;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.3314;MQMR=59.9657;NS=94;NUMALT=1;ODDS=2.58505;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256966;QR=67916;RO=1895;RPL=6839;RPP=12778.7;RPPR=4083.28;RPR=340;RUN=1;SAF=0;SAP=15592;SAR=7179;SRF=0;SRP=4117.95;SRR=1895;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:12,20:12:432:20:716:-55.0846,0,-29.5882	0/1:71:37,34:37:1332:34:1209:-87.6937,0,-98.8093	0/1:151:89,62:89:3180:62:2228:-155.27,0,-240.964	1/1:282:0,282:0:0:282:10095:-907.644,-84.8905,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:35:0,35:0:0:35:1260:-113.659,-10.5361,0	0/1:174:92,82:92:3280:82:2914:-208.947,0,-243.039	1/1:120:0,120:0:0:120:4310:-387.819,-36.1236,0	1/1:59:0,59:0:0:59:2124:-191.384,-17.7608,0	0/1:101:30,71:30:1071:71:2548:-199.072,0,-66.2976	0/1:62:32,30:32:1148:30:1068:-77.7682,0,-84.966	0/1:126:60,66:60:2147:66:2360:-174.449,0,-155.567	1/1:119:0,119:0:0:119:4272:-384.408,-35.8226,0	1/1:123:0,123:0:0:123:4408:-396.733,-37.0267,0	1/1:92:0,92:0:0:92:3292:-296.388,-27.6948,0	0/1:80:42,38:42:1503:38:1364:-98.9255,0,-111.481	0/1:58:32,26:32:1152:26:932:-66.7382,0,-86.5304	1/1:30:0,30:0:0:30:1080:-97.4672,-9.0309,0	0/1:37:19,18:19:680:18:644:-47.111,0,-50.3911	1/1:97:0,97:0:0:97:3473:-312.734,-29.1999,0	1/1:197:0,197:0:0:197:7016:-630.878,-59.3029,0	0/1:69:47,22:47:1688:22:792:-50.8061,0,-131.436	1/1:128:0,128:0:0:128:4581:-412,-38.5318,0	0/1:53:13,40:13:460:40:1440:-113.491,0,-25.7808	1/1:62:0,62:0:0:62:2216:-199.684,-18.6639,0	0/1:226:84,142:84:3012:142:5095:-390.255,0,-203.277	1/1:275:1,274:1:36:274:9814:-878.843,-79.185,0	0/1:29:17,12:17:608:12:432:-30.4806,0,-46.3222	1/1:368:1,367:1:36:367:13173:-1180.66,-107.181,0	1/1:163:1,162:1:36:162:5796:-517.989,-45.4696,0	1/1:123:0,123:0:0:123:4423:-397.698,-37.0267,0	1/1:7:0,7:0:0:7:252:-22.9755,-2.10721,0	0/1:16:6,10:6:212:10:360:-27.9101,0,-14.6083	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:13:0,13:0:0:13:453:-41.0817,-3.91339,0	1/1:294:0,294:0:0:294:10552:-948.749,-88.5028,0	0/1:128:55,73:55:1976:73:2612:-196.653,0,-139.578	0/1:52:31,21:31:1093:21:752:-52.3307,0,-83.0241	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:99:39,60:39:1404:60:2146:-163.55,0,-96.8289	1/1:38:0,38:0:0:38:1359:-122.596,-11.4391,0	0/1:80:33,47:33:1184:47:1684:-127.748,0,-82.7813	0/1:74:39,35:39:1392:35:1244:-89.9884,0,-103.303	1/1:80:0,80:0:0:80:2872:-258.713,-24.0824,0	1/1:77:0,77:0:0:77:2764:-248.813,-23.1793,0	1/1:85:0,85:0:0:85:3056:-275.216,-25.5876,0	1/1:148:0,148:0:0:148:5278:-474.904,-44.5524,0	1/1:101:0,101:0:0:101:3606:-324.667,-30.404,0	1/1:188:0,188:0:0:188:6718:-604.22,-56.5936,0	1/1:100:0,100:0:0:100:3581:-322.392,-30.103,0	1/1:7:0,7:0:0:7:252:-23.0062,-2.10721,0	0/1:106:47,59:47:1680:59:2109:-158.12,0,-119.578	0/1:89:46,43:46:1656:43:1533:-111.467,0,-122.536	0/1:17:9,8:9:300:8:288:-21.1321,0,-22.2046	0/1:140:72,68:72:2592:68:2425:-176.257,0,-191.379	1/1:39:0,38:0:0:38:1356:-121.91,-11.4391,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:109:52,57:52:1856:57:2033:-150.365,0,-134.507	0/1:139:70,69:70:2520:69:2480:-181.561,0,-185.208	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:219:0,219:0:0:219:7835:-704.076,-65.9256,0	0/1:173:91,82:91:3268:82:2914:-210.342,0,-242.261	1/1:71:0,71:0:0:71:2518:-226.841,-21.3731,0	1/1:61:0,61:0:0:61:2158:-194.178,-18.3628,0	1/1:124:1,123:1:36:123:4381:-390.313,-33.7294,0	0/1:167:114,53:114:4096:53:1902:-121.116,0,-318.552	1/1:48:0,48:0:0:48:1728:-155.795,-14.4494,0	1/1:86:0,86:0:0:86:3069:-276.196,-25.8886,0	1/1:47:0,47:0:0:47:1680:-151.484,-14.1484,0	1/1:25:0,25:0:0:25:900:-80.7411,-7.52575,0	0/1:193:98,95:98:3512:95:3382:-245.958,0,-258.188	0/1:91:33,58:33:1188:58:2084:-160.367,0,-79.8349	1/1:174:0,174:0:0:174:6214:-559.271,-52.3792,0	0/1:152:93,59:93:3331:59:2120:-145.276,0,-254.25	0/1:40:21,19:21:747:19:680:-49.4798,0,-55.5131	1/1:52:0,52:0:0:52:1872:-168.724,-15.6536,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:44:21,23:21:756:23:823:-61.1329,0,-55.1219	1/1:123:0,123:0:0:123:4416:-397.501,-37.0267,0	1/1:136:0,135:0:0:135:4812:-432.562,-40.6391,0	0/1:56:24,32:24:860:32:1144:-86.4103,0,-60.8642	1/1:110:0,110:0:0:110:3944:-355.055,-33.1133,0	0/1:56:30,26:30:1080:26:928:-66.7101,0,-80.6556	1/1:154:1,153:1:36:153:5500:-491.439,-42.7603,0	0/1:22:5,17:5:180:17:608:-48.3892,0,-9.9294	0/1:108:67,41:67:2400:41:1476:-100.355,0,-183.745	1/1:82:0,82:0:0:82:2948:-265.524,-24.6845,0	0/1:68:31,37:31:1116:37:1305:-97.2618,0,-80.2817	0/1:139:76,63:76:2736:63:2256:-161.405,0,-204.634	0/1:109:72,37:72:2588:37:1302:-84.6506,0,-200.354	1/1:172:0,172:0:0:172:6153:-553.809,-51.7772,0	1/1:158:0,158:0:0:158:5670:-510.187,-47.5627,0
chr03	27134691	.	A	G	29892.3	PASS	AB=0.484371;ABP=11.0876;AC=46;AF=0.244681;AN=188;AO=1853;CIGAR=1X;DP=8731;DPB=8731;DPRA=0.823573;EPP=4009.4;EPPR=14810.5;GTI=2;LEN=1;MEANALT=1.03846;MQM=59.966;MQMR=59.9748;NS=94;NUMALT=1;ODDS=6.25023;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65385;QR=246088;RO=6875;RPL=1852;RPP=4018.07;RPPR=14801.9;RPR=1;RUN=1;SAF=1;SAP=4018.07;SAR=1852;SRF=1;SRP=14923.2;SRR=6874;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:35,25:35:1233:25:866:-60.1921,0,-93.2103	0/1:81:55,26:55:1980:26:902:-57.1094,0,-154.091	0/1:143:68,75:68:2416:75:2635:-194.295,0,-174.647	0/0:207:207,0:207:7380:0:0:0,-62.3132,-663.473	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:134:76,58:76:2728:58:2022:-141.914,0,-205.425	0/0:152:152,0:152:5444:0:0:0,-45.7566,-490.086	0/0:112:112,0:112:3993:0:0:0,-33.7154,-359.514	0/1:108:59,49:59:2124:49:1739:-124.283,0,-158.917	0/1:63:42,20:42:1512:20:695:-43.8491,0,-117.351	0/1:114:57,57:57:2048:57:2006:-146.495,0,-150.274	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:51:22,29:22:788:29:988:-73.8731,0,-55.8923	0/1:42:23,19:23:828:19:671:-48.0725,0,-62.2009	0/0:27:26,1:26:936:1:36:0,-4.52953,-80.9608	0/1:32:14,18:14:504:18:636:-47.9351,0,-36.0651	0/0:123:123,0:123:4397:0:0:0,-37.0267,-395.902	0/0:217:217,0:217:7757:0:0:0,-65.3235,-698.161	0/1:70:22,48:22:792:48:1699:-132.123,0,-50.5336	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:35:19,16:19:684:16:576:-41.6389,0,-51.3543	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/1:290:138,152:138:4922:152:5379:-396.902,0,-355.255	0/0:240:240,0:240:8602:0:0:0,-72.2472,-774.173	0/1:29:11,18:11:396:18:639:-49.1002,0,-27.2529	0/0:270:270,0:270:9649:0:0:0,-81.2781,-868.363	0/0:121:121,0:121:4335:0:0:0,-36.4246,-390.324	0/0:146:146,0:146:5196:0:0:0,-43.9504,-467.78	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:27:19,8:19:680:8:280:-17.4115,0,-53.4014	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:195:195,0:195:6999:0:0:0,-58.7008,-629.97	0/1:155:75,80:75:2688:80:2821:-207.471,0,-195.505	0/1:57:25,32:25:887:32:1117:-83.6765,0,-62.9894	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:92:58,34:58:2080:34:1195:-80.159,0,-159.776	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:133:61,71:61:2179:71:2505:-185.745,0,-156.427	0/1:52:28,24:28:1008:24:843:-60.5344,0,-75.3828	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:120:119,1:119:4280:1:36:0,-32.5253,-381.288	0/0:72:72,0:72:2564:0:0:0,-21.6742,-231.011	0/0:130:130,0:130:4637:0:0:0,-39.1339,-417.49	0/0:92:92,0:92:3286:0:0:0,-27.6948,-295.959	0/0:120:119,0:119:4268:0:0:0,-35.8226,-383.938	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:107:52,55:52:1852:55:1946:-143.205,0,-134.75	0/1:75:32,43:32:1144:43:1510:-113.614,0,-80.6877	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:142:73,69:73:2619:69:2448:-177.83,0,-193.21	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:30:15,15:15:536:15:536:-39.5439,0,-39.5439	0/1:117:57,60:57:2040:60:2139:-157.557,0,-148.652	0/1:95:47,48:47:1692:48:1683:-123.157,0,-123.969	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:185:185,0:185:6585:0:0:0,-55.6905,-592.731	0/1:159:95,64:95:3408:64:2256:-155.439,0,-259.07	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/0:151:149,2:149:5337:2:72:0,-38.6188,-473.624	0/1:135:47,88:47:1684:88:3128:-241.109,0,-111.208	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:248:126,122:126:4498:122:4326:-314.863,0,-330.333	0/1:126:72,54:72:2588:54:1893:-132.717,0,-195.238	0/0:207:207,0:207:7392:0:0:0,-62.3132,-665.327	0/1:213:130,83:130:4668:83:2930:-199.817,0,-356.16	0/1:76:38,38:38:1350:38:1342:-98.2003,0,-98.9205	0/0:79:77,2:77:2760:2:68:0,-17.3237,-242.184	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:107:63,44:63:2264:44:1566:-109.017,0,-171.812	0/0:77:76,1:76:2712:1:36:0,-19.581,-240.656	0/0:240:240,0:240:8585:0:0:0,-72.2472,-772.646	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9624	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.76	0/1:40:18,22:18:644:22:779:-58.3909,0,-46.2494	0/0:147:145,2:145:5191:2:72:0,-37.4147,-460.492	0/1:23:11,12:11:396:12:419:-31.119,0,-29.0591	0/1:70:38,32:38:1368:32:1126:-80.5745,0,-102.349	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/1:35:15,20:15:540:20:712:-53.8706,0,-38.4005	0/1:86:50,36:50:1792:36:1257:-87.5414,0,-135.674	0/1:55:22,33:22:792:33:1167:-88.7798,0,-55.049	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976
chr03	27170205	.	A	G	9026.35	PASS	AB=0.515808;ABP=5.41324;AC=44;AF=0.234043;AN=188;AO=573;CIGAR=1X;DP=2436;DPB=2436;DPRA=0.965939;EPP=1247.26;EPPR=4041.95;GTI=1;LEN=1;MEANALT=1;MQM=59.8848;MQMR=59.9785;NS=94;NUMALT=1;ODDS=0.522904;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20098;QR=65943;RO=1860;RPL=0;RPP=1247.26;RPPR=4041.95;RPR=573;RUN=1;SAF=0;SAP=1247.26;SAR=573;SRF=0;SRP=4041.95;SRR=1860;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:6,10:6:201:10:348:-26.8344,0,-13.5996	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/1:37:24,13:24:860:13:451:-29.7774,0,-66.5837	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:21:13,8:13:468:8:269:-18.2145,0,-36.138	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:19:9,10:9:320:10:360:-27.0247,0,-23.4228	0/1:42:24,18:24:856:18:632:-44.5635,0,-64.7178	0/1:37:24,13:24:842:13:455:-30.1438,0,-64.959	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:78:77,0:77:2727:0:0:0,-23.1793,-245.423	0/0:25:24,0:24:860:0:0:0,-7.22472,-77.3621	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:24:14,10:14:483:10:352:-24.7931,0,-36.5726	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/1:22:9,13:9:316:13:450:-34.169,0,-22.1562	0/0:33:33,0:33:1148:0:0:0,-9.93399,-103.623	0/0:19:18,1:18:623:1:36:0,-2.12129,-52.7948	0/1:18:5,13:5:176:13:460:-36.3168,0,-10.7665	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:10:3,7:3:104:7:243:-19.1972,0,-6.67733	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:53:24,29:24:856:29:1027:-76.7876,0,-61.4065	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:24:24,0:24:837:0:0:0,-7.22472,-75.6456	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.57877	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:45:44,1:44:1559:1:21:0,-11.4464,-138.501	0/1:35:20,15:20:712:15:508:-35.5039,0,-53.8706	0/1:35:15,20:15:540:20:703:-53.0575,0,-38.4005	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:19:13,6:13:464:6:206:-13.1564,0,-36.3779	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/1:24:11,13:11:392:13:455:-34.0572,0,-28.3953	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/0:40:40,0:40:1408:0:0:0,-12.0412,-127.014	0/0:32:31,0:31:1108:0:0:0,-9.33193,-99.6712	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/1:35:21,14:21:752:14:492:-34.0763,0,-57.4702	0/1:53:26,27:26:932:27:938:-68.7772,0,-68.2443	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:30:15,15:15:536:15:512:-37.3708,0,-39.5439	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:22:10,12:10:348:12:428:-32.2361,0,-25.0325	0/1:66:37,29:37:1324:29:1036:-73.6859,0,-99.5941	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:34:10,24:10:360:24:860:-67.4418,0,-22.5093	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:37:37,0:37:1296:0:0:0,-11.1381,-116.938	0/1:37:7,30:7:244:30:1051:-83.7615,0,-11.1613	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:41:41,0:41:1428:0:0:0,-12.3422,-128.813	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:37:17,20:17:612:20:690:-51.2812,0,-44.2753	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:111:111,0:111:3891:0:0:0,-33.4143,-350.384	0/1:34:15,19:15:525:19:680:-51.2941,0,-37.343	0/1:36:14,22:14:491:22:760:-57.8768,0,-33.684	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:4:2,2:2:57:2:72:-5.6326,0,-4.20919	0/1:14:11,3:11:392:3:108:-5.86075,0,-31.4056	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:29:29,0:29:1019:0:0:0,-8.72987,-92.0213	0/1:17:6,11:6:212:11:373:-28.7777,0,-14.3073	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/1:9:2,7:2:72:7:244:-19.5902,0,-4.12745	0/1:20:10,10:10:356:10:347:-25.5421,0,-26.3606	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/1:25:10,15:10:360:15:540:-41.4108,0,-25.2186	0/1:88:41,47:41:1468:47:1654:-122.656,0,-105.925	0/1:26:10,16:10:356:16:541:-41.1793,0,-24.5545	0/0:37:37,0:37:1300:0:0:0,-11.1381,-117.298	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4717
chr03	27184095	.	GTAT	GTAC,TTAC	135433	PASS	AB=0.493493,0.504795;ABP=4.08414,3.59333;AC=134,50;AF=0.728261,0.271739;AN=184;AO=4948,1488;CIGAR=3M1X,1X2M1X;DP=6456;DPB=6457;DPRA=21.7281,0.81445;EPP=10747.5,3234.16;EPPR=16.0391;GTI=2;LEN=1,4;MEANALT=1.69663,2.01961;MQM=58.2844,48.9288;MQMR=60;NS=92;NUMALT=2;ODDS=0.0329033;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=68,68;PQR=0;PRO=0;QA=175813,51090;QR=216;RO=6;RPL=0,0;RPP=10747.5,3234.16;RPPR=16.0391;RPR=4948,1488;RUN=1,1;SAF=4948,1488;SAP=10747.5,3234.16;SAR=0,0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:18:0,12,6:0:0:12,6:432,193:-50.5901,-15.3216,-11.7092,-35.596,0,-33.7898	1/2:121:0,67,54:0:0:67,54:2376,1868:-343.346,-149.897,-129.728,-193.795,0,-177.54	1/2:58:0,25,33:0:0:25,33:888,1124:-162.804,-90.458,-82.9323,-72.6934,0,-62.7594	1/1:121:0,120,0:0:0:120,0:4249,0:-382.087,-36.1236,0,-382.087,-36.1236,-382.087	1/1:40:0,39,1:0:0:39,1:1400,34:-125.877,-11.7402,0,-123.123,-8.64552,-122.822	1/1:44:0,44,0:0:0:44,0:1556,0:-140.296,-13.2453,0,-140.296,-13.2453,-140.296	1/2:94:0,55,39:0:0:55,39:1940,1329:-264.93,-107.015,-90.4588,-158.258,0,-146.518	1/1:162:0,162,0:0:0:162,0:5699,0:-512.872,-48.7669,0,-512.872,-48.7669,-512.872	1/1:82:0,82,0:0:0:82,0:2888,0:-258.76,-24.6845,0,-258.76,-24.6845,-258.76	1/2:90:0,47,43:0:0:47,43:1668,1465:-252.375,-116.536,-102.388,-136.183,0,-123.239	1/2:86:0,36,50:0:0:36,50:1280,1740:-243.342,-139.042,-128.204,-104.65,0,-89.5984	1/2:70:0,35,35:0:0:35,35:1239,1192:-196.066,-95.538,-85.0019,-100.872,0,-90.336	1/1:96:0,96,0:0:0:96,0:3435,0:-308.778,-28.8989,0,-308.778,-28.8989,-308.778	1/1:71:0,70,0:0:0:70,0:2500,0:-224.853,-21.0721,0,-224.853,-21.0721,-224.853	1/1:87:0,87,0:0:0:87,0:3111,0:-279.765,-26.1896,0,-279.765,-26.1896,-279.765	1/2:70:0,31,39:0:0:31,39:1104,1352:-195.765,-105.867,-96.5351,-90.2438,0,-78.5036	1/2:104:0,55,48:0:0:55,48:1963,1659:-291.601,-131.76,-115.203,-159.836,0,-145.387	1/1:73:0,73,0:0:0:73,0:2620,0:-235.836,-21.9752,0,-235.836,-21.9752,-235.836	1/2:69:0,24,45:0:0:24,45:860,1570:-194.979,-124.864,-117.639,-70.4675,0,-56.9211	1/1:78:0,78,0:0:0:78,0:2784,0:-250.763,-23.4803,0,-250.763,-23.4803,-250.763	1/1:101:0,101,0:0:0:101,0:3576,0:-321.94,-30.404,0,-321.94,-30.404,-321.94	1/2:34:0,10,24:0:0:10,24:356,802:-93.5715,-64.559,-61.5487,-29.3609,0,-22.1362	1/1:49:0,48,1:0:0:48,1:1708,35:-153.625,-14.4494,0,-150.779,-11.2539,-150.478	1/2:58:0,25,33:0:0:25,33:884,1097:-160.587,-88.5778,-81.0521,-72.3526,0,-62.4186	1/1:45:0,44,0:0:0:44,0:1564,0:-140.619,-13.2453,0,-140.619,-13.2453,-140.619	1/2:172:0,103,69:0:0:103,69:3672,2389:-490.634,-192.242,-161.236,-298.74,0,-277.969	1/1:121:0,121,0:0:0:121,0:4264,0:-383.772,-36.4246,0,-383.772,-36.4246,-383.772	1/2:39:0,24,15:0:0:24,15:848,525:-110.942,-41.9078,-34.683,-69.38,0,-64.8645	1/1:108:4,104,0:4:144:104,0:3667,0:-316.556,-19.1976,0,-317.76,-31.3071,-329.51	1/1:75:0,75,0:0:0:75,0:2672,0:-240.667,-22.5773,0,-240.667,-22.5773,-240.667	1/1:57:0,57,0:0:0:57,0:1996,0:-179.768,-17.1587,0,-179.768,-17.1587,-179.768	1/1:14:0,14,0:0:0:14,0:504,0:-45.6806,-4.21442,0,-45.6806,-4.21442,-45.6806	1/2:6:1,3,2:1:36:3,2:108,63:-10.4274,-1.88289,-3.93572,-5.87483,0,-8.21019	2/2:4:0,0,4:0:0:0,4:0,141:-13.003,-13.003,-13.003,-1.20412,-1.20412,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:223:0,223,0:0:0:223,0:7959,0:-715.403,-67.1297,0,-715.403,-67.1297,-715.403	1/2:60:0,33,27:0:0:33,27:1172,919:-169.198,-73.7113,-63.7774,-95.8305,0,-87.7027	1/2:77:0,35,42:0:0:35,42:1255,1479:-218.304,-116.339,-105.803,-102.315,0,-89.6714	2/2:3:0,0,3:0:0:0,3:0,104:-9.53352,-9.53352,-9.53352,-0.90309,-0.90309,0	1/2:81:0,52,29:0:0:52,29:1838,984:-228.294,-78.7011,-63.0475,-149.934,0,-141.204	1/1:43:0,43,0:0:0:43,0:1529,0:-137.77,-12.9443,0,-137.77,-12.9443,-137.77	1/2:68:0,41,27:0:0:41,27:1468,932:-194.769,-75.1087,-62.7664,-120.008,0,-111.88	1/2:94:1,62,31:1:36:62,31:2198,1069:-261.193,-82.5883,-66.8625,-175.953,0,-169.558	1/1:103:0,103,0:0:0:103,0:3679,0:-330.844,-31.0061,0,-330.844,-31.0061,-330.844	1/1:46:0,46,0:0:0:46,0:1624,0:-146.427,-13.8474,0,-146.427,-13.8474,-146.427	1/1:70:0,69,0:0:0:69,0:2458,0:-220.121,-20.7711,0,-220.121,-20.7711,-220.121	1/1:105:0,104,0:0:0:104,0:3692,0:-332.013,-31.3071,0,-332.013,-31.3071,-332.013	1/1:60:0,60,0:0:0:60,0:2086,0:-187.954,-18.0618,0,-187.954,-18.0618,-187.954	1/1:71:0,71,0:0:0:71,0:2540,0:-228.723,-21.3731,0,-228.723,-21.3731,-228.723	1/1:50:0,50,0:0:0:50,0:1784,0:-160.546,-15.0515,0,-160.546,-15.0515,-160.546	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:52:0,16,35:0:0:16,35:553,1186:-139.675,-94.7519,-89.9354,-44.9154,0,-34.3794	1/2:21:0,17,4:0:0:17,4:600,136:-59.8382,-10.9881,-5.87057,-49.1841,0,-47.98	1/2:18:0,8,10:0:0:8,10:276,343:-49.9657,-27.5395,-25.1312,-22.767,0,-19.7567	1/2:77:0,40,37:0:0:40,37:1413,1265:-215.69,-100.978,-88.9368,-115.055,0,-103.917	1/1:37:0,37,0:0:0:37,0:1305,0:-117.684,-11.1381,0,-117.684,-11.1381,-117.684	1/2:6:0,1,5:0:0:1,5:36,169:-16.6385,-13.6962,-13.3951,-3.29724,0,-1.79209	2/2:3:0,0,3:0:0:0,3:0,97:-8.8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chr03	27196544	.	T	C	18386.8	PASS	AB=0.457573;ABP=32.1234;AC=44;AF=0.234043;AN=188;AO=857;CIGAR=1X;DP=4035;DPB=4035;DPRA=1.20733;EPP=57.7633;EPPR=6808.43;GTI=1;LEN=1;MEANALT=1.25532;MQM=59.979;MQMR=59.9733;NS=94;NUMALT=1;ODDS=2.46211;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30411;QR=112477;RO=3146;RPL=355;RPP=57.7633;RPPR=6679.01;RPR=502;RUN=1;SAF=0;SAP=1863.96;SAR=857;SRF=15;SRP=6704.8;SRR=3131;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:34:24,10:24:856:10:360:-22.5093,0,-67.1261	0/1:14:10,4:10:356:4:144:-9.0992,0,-28.1668	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:18:17,0:17:608:0:0:0,-5.11751,-54.6923	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/1:39:26,13:26:932:13:468:-30.7195,0,-72.4587	0/0:51:50,1:50:1754:1:36:0,-11.7543,-154.541	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:29:17,12:17:604:12:428:-30.1289,0,-45.9607	0/1:80:42,37:42:1512:37:1306:-93.6989,0,-112.233	0/1:47:20,26:20:708:26:933:-70.0811,0,-49.8387	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.944	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.272	0/0:59:58,0:58:2084:0:0:0,-17.4597,-187.47	0/1:49:24,24:24:856:24:860:-62.9126,0,-62.552	0/1:71:33,38:33:1169:38:1302:-96.099,0,-84.1422	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:45:22,21:22:792:21:756:-55.0631,0,-58.3016	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:33:22,11:22:792:11:396:-26.0488,0,-61.6717	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:90:61,29:61:2196:29:1044:-67.1821,0,-170.784	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.635	0/1:27:13,12:13:468:12:419:-30.1586,0,-34.5741	0/0:50:49,0:49:1764:0:0:0,-14.7505,-158.684	0/0:61:61,0:61:2157:0:0:0,-18.3628,-194.396	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:155:152,1:152:5460:1:36:0,-42.8191,-487.928	0/1:52:28,24:28:1004:24:837:-59.9917,0,-75.0223	0/1:65:36,28:36:1292:28:1008:-71.4091,0,-96.958	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:29:10,19:10:360:19:684:-53.1605,0,-24.0144	0/0:33:31,0:31:1116:0:0:0,-9.33193,-100.387	0/1:36:26,10:26:928:10:360:-21.9072,0,-73.0012	0/1:47:24,23:24:864:23:810:-59.0703,0,-63.9342	0/0:49:48,0:48:1724:0:0:0,-14.4494,-155.086	0/0:47:46,0:46:1621:0:0:0,-13.8474,-145.817	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:47:47,0:47:1677:0:0:0,-14.1484,-151.215	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:33:19,13:19:684:13:447:-30.5655,0,-51.8975	0/1:22:17,5:17:608:5:180:-9.9294,0,-48.4294	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:37:23,14:23:824:14:504:-34.56,0,-63.3452	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:122:64,58:64:2277:58:2056:-148.583,0,-168.465	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/0:81:81,0:81:2859:0:0:0,-24.3834,-257.544	0/1:62:35,27:35:1252:27:972:-69.134,0,-94.3212	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:39:38,1:38:1349:1:36:0,-8.14189,-118.11	0/1:51:27,24:27:972:24:860:-62.3693,0,-72.4454	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:64:64,0:64:2266:0:0:0,-19.2659,-204.149	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:35:23,12:23:828:12:419:-27.5058,0,-64.3081	0/1:30:18,12:18:648:12:428:-29.8279,0,-49.621	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:29:16,13:16:572:13:460:-33.0055,0,-43.0836	0/1:41:24,17:24:860:17:599:-41.8959,0,-65.3796	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8446	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:33:27,6:27:893:6:212:-9.49081,0,-70.7104	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:91:49,42:49:1756:42:1484:-106.459,0,-130.93	0/0:67:64,0:64:2300:0:0:0,-19.2659,-206.901	0/1:67:32,35:32:1152:35:1247:-92.3651,0,-83.8211	0/0:99:94,1:94:3376:1:36:0,-25.3594,-300.457	0/1:39:19,19:19:684:19:680:-49.7303,0,-50.0914	0/1:68:26,41:26:932:41:1444:-109.724,0,-63.6701	0/0:48:47,0:47:1684:0:0:0,-14.1484,-151.487	0/1:75:32,43:32:1137:43:1536:-115.954,0,-80.0597	0/1:112:46,65:46:1652:65:2268:-170.604,0,-115.194	0/1:53:19,34:19:684:34:1212:-93.4317,0,-45.9357	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:71:68,0:68:2440:0:0:0,-20.47,-219.495
chr03	27196616	.	C	G	244758	PASS	AB=0.478219;ABP=24.3885;AC=142;AF=0.755319;AN=188;AO=9153;CIGAR=1X;DP=11888;DPB=11888;DPRA=0;EPP=19835.1;EPPR=5905.09;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.9789;MQMR=60;NS=94;NUMALT=1;ODDS=9.47773;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=321466;QR=96041;RO=2726;RPL=4892;RPP=97.4707;RPPR=26.5763;RPR=4261;RUN=1;SAF=4897;SAP=100.488;SAR=4256;SRF=1451;SRP=27.6851;SRR=1275;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:40,24:40:1421:24:847:-57.2828,0,-108.919	0/1:119:55,64:55:1933:64:2285:-170.087,0,-138.42	0/1:98:49,49:49:1741:49:1695:-123.328,0,-127.471	1/1:191:1,190:1:36:190:6744:-603.438,-53.8985,0	1/1:49:1,48:1:36:48:1707:-150.317,-11.1522,0	1/1:42:2,40:2:68:40:1404:-120.197,-6.18555,0	0/1:122:67,55:67:2339:55:1922:-136.528,0,-174.043	1/1:112:0,112:0:0:112:3966:-357.131,-33.7154,0	1/1:177:0,177:0:0:177:6216:-559.531,-53.2823,0	0/1:92:51,41:51:1783:41:1456:-103.639,0,-133.054	0/1:165:85,80:85:3016:80:2764:-199.331,0,-222	0/1:208:104,104:104:3643:104:3560:-257.997,0,-265.462	1/1:192:0,192:0:0:192:6651:-598.682,-57.7978,0	1/1:235:0,235:0:0:235:8187:-736.858,-70.7421,0	1/1:169:0,169:0:0:169:5977:-538.037,-50.8741,0	0/1:179:98,81:98:3490:81:2833:-201.324,0,-260.427	0/1:162:78,84:78:2684:84:2980:-219.665,0,-193.034	1/1:124:0,124:0:0:124:4380:-394.375,-37.3277,0	0/1:107:57,50:57:2027:50:1734:-124.13,0,-150.492	1/1:152:0,152:0:0:152:5345:-481.186,-45.7566,0	1/1:246:0,246:0:0:246:8621:-775.896,-74.0534,0	0/1:50:33,17:33:1170:17:604:-39.6391,0,-90.5544	1/1:207:0,206:0:0:206:7218:-649.445,-62.0122,0	0/1:100:32,68:32:1129:68:2422:-188.132,0,-71.8133	1/1:109:1,108:1:36:108:3828:-341.12,-29.214,0	0/1:213:92,121:92:3239:121:4256:-319.1,0,-227.61	1/1:208:0,208:0:0:208:7260:-653.461,-62.6142,0	0/1:102:55,47:55:1926:47:1653:-118.35,0,-142.908	1/1:180:0,180:0:0:180:6355:-572.041,-54.1854,0	1/1:104:0,103:0:0:103:3635:-326.994,-31.0061,0	1/1:178:0,178:0:0:178:6231:-560.891,-53.5833,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:12:0,12:0:0:12:413:-37.4988,-3.61236,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:406:1,405:1:36:405:14138:-1268.62,-118.62,0	0/1:80:36,44:36:1270:44:1566:-117.148,0,-90.5189	0/1:175:95,80:95:3334:80:2818:-201.177,0,-247.599	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:122:58,64:58:2071:64:2278:-168.555,0,-149.934	1/1:80:0,80:0:0:80:2802:-252.42,-24.0824,0	0/1:131:65,65:65:2308:65:2293:-167.134,0,-168.485	0/1:238:135,102:135:4757:102:3552:-248.187,0,-356.588	1/1:144:0,144:0:0:144:5049:-454.56,-43.3483,0	1/1:55:0,55:0:0:55:1952:-175.953,-16.5567,0	1/1:95:1,94:1:36:94:3340:-297.218,-24.9996,0	1/1:132:0,132:0:0:132:4668:-420.282,-39.736,0	1/1:93:0,93:0:0:93:3266:-294.162,-27.9958,0	1/1:138:0,138:0:0:138:4885:-439.775,-41.5421,0	1/1:109:1,108:1:36:108:3861:-344.087,-29.214,0	1/1:9:0,9:0:0:9:292:-26.5951,-2.70927,0	0/1:91:42,49:42:1449:49:1762:-131.47,0,-103.306	0/1:44:23,21:23:808:21:748:-54.4,0,-59.7948	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:124:61,63:61:2116:63:2179:-159.045,0,-153.378	1/1:89:0,89:0:0:89:3139:-282.736,-26.7917,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:11:4,7:4:144:7:243:-18.8962,0,-10.0023	0/1:118:57,61:57:2017:61:2146:-157.883,0,-146.28	0/1:219:123,96:123:4368:96:3401:-240.38,0,-327.369	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:85:0,85:0:0:85:3000:-270.229,-25.5876,0	0/1:170:81,89:81:2856:89:3187:-235.878,0,-206.1	1/1:100:0,100:0:0:100:3539:-318.719,-30.103,0	1/1:64:0,64:0:0:64:2223:-200.329,-19.2659,0	1/1:306:4,302:4:144:302:10678:-947.621,-78.8016,0	0/1:65:46,19:46:1612:19:676:-41.601,0,-125.799	1/1:99:3,96:3:108:96:3341:-290.813,-19.7268,0	1/1:78:1,77:1:32:77:2701:-240.132,-20.281,0	1/1:191:1,190:1:36:190:6693:-598.852,-53.8985,0	0/1:32:17,15:17:581:15:523:-37.7655,0,-42.9773	0/1:115:67,48:67:2367:48:1679:-116.774,0,-178.67	0/1:100:47,53:47:1672:53:1835:-135.322,0,-120.664	1/1:235:0,235:0:0:235:8278:-745.018,-70.7421,0	0/1:104:55,49:55:1972:49:1752:-126.657,0,-146.448	0/1:141:75,66:75:2647:66:2340:-168.4,0,-196.03	1/1:116:0,116:0:0:116:4023:-362.215,-34.9195,0	0/1:16:10,6:10:356:6:199:-13.418,0,-27.5648	0/1:104:50,54:50:1756:54:1906:-140.509,0,-127.014	1/1:142:1,141:1:36:141:4969:-443.764,-39.148,0	1/1:194:1,193:1:36:193:6790:-607.581,-54.8015,0	0/1:205:107,98:107:3792:98:3424:-246.661,0,-279.765	1/1:187:0,187:0:0:187:6486:-583.832,-56.2926,0	0/1:215:117,97:117:4088:97:3433:-244.551,0,-303.476	1/1:358:4,352:4:144:352:12289:-1092.56,-94.2129,0	0/1:80:41,39:41:1430:39:1359:-98.5251,0,-104.909	0/1:145:72,73:72:2557:73:2533:-184.572,0,-186.73	1/1:166:0,165:0:0:165:5793:-521.133,-49.67,0	0/1:154:72,82:72:2553:82:2880:-213.079,0,-183.661	0/1:159:93,65:93:3209:65:2271:-156.721,0,-241.108	0/1:204:136,68:136:4798:68:2384:-153.405,0,-370.57	1/1:53:0,53:0:0:53:1832:-165.154,-15.9546,0	1/1:266:0,266:0:0:266:9287:-835.812,-80.074,0
chr03	27197269	.	C	A	32657	PASS	AB=0.496656;ABP=3.38785;AC=46;AF=0.244681;AN=188;AO=1939;CIGAR=1X;DP=9034;DPB=9034;DPRA=0.790203;EPP=4187.48;EPPR=15221.2;GTI=2;LEN=1;MEANALT=1.07547;MQM=59.5152;MQMR=59.943;NS=94;NUMALT=1;ODDS=1.0125;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69436;QR=252748;RO=7088;RPL=3;RPP=4187.48;RPPR=15229.8;RPR=1936;RUN=1;SAF=1939;SAP=4213.5;SAR=0;SRF=7087;SRP=15385.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:26,10:26:907:10:360:-21.9072,0,-71.1002	0/1:140:73,66:73:2619:66:2372:-171.522,0,-193.754	0/1:65:37,28:37:1307:28:1008:-71.4624,0,-98.3638	0/0:234:234,0:234:8375:0:0:0,-70.441,-753.755	0/0:52:52,0:52:1854:0:0:0,-15.6536,-167.138	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.498	0/1:154:85,68:85:3032:68:2437:-173.045,0,-226.686	0/0:135:135,0:135:4804:0:0:0,-40.639,-432.516	0/0:113:113,0:113:4015:0:0:0,-34.0164,-361.541	0/1:141:73,64:73:2620:64:2292:-164.907,0,-194.327	0/1:85:49,36:49:1747:36:1296:-91.3152,0,-131.699	0/1:76:38,38:38:1356:38:1364:-100.172,0,-99.4599	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/0:105:105,0:105:3731:0:0:0,-31.6081,-335.993	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.523	0/1:62:31,31:31:1099:31:1112:-81.7275,0,-80.5337	0/1:60:34,26:34:1200:26:936:-66.4953,0,-90.2429	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.528	0/1:53:25,28:25:892:28:993:-73.7279,0,-64.6451	0/0:158:158,0:158:5659:0:0:0,-47.5627,-509.429	0/0:183:182,1:182:6520:1:32:0,-51.8912,-583.686	0/1:53:17,36:17:612:36:1292:-100.524,0,-39.4588	0/0:88:87,1:87:3111:1:36:0,-22.8924,-276.618	0/1:111:63,48:63:2256:48:1720:-121.643,0,-169.889	0/0:45:44,1:44:1559:1:36:0,-9.95987,-137.014	0/1:279:133,146:133:4759:146:5229:-386.677,0,-344.479	0/0:213:213,0:213:7593:0:0:0,-64.1194,-683.4	0/1:44:31,13:31:1112:13:468:-29.2143,0,-87.146	0/0:273:273,0:273:9772:0:0:0,-82.1812,-879.409	0/0:115:115,0:115:4094:0:0:0,-34.6184,-368.636	0/0:106:106,0:106:3761:0:0:0,-31.9092,-338.677	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:13:7,6:7:252:6:216:-15.8663,0,-19.1156	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:234:234,0:234:8357:0:0:0,-70.441,-752.102	0/1:137:58,79:58:2076:79:2810:-211.896,0,-145.869	0/1:91:53,38:53:1899:38:1368:-96.0224,0,-143.793	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:139:74,65:74:2631:65:2317:-166.892,0,-195.184	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/1:163:85,78:85:3034:78:2800:-203.13,0,-224.211	0/1:95:48,47:48:1703:47:1674:-122.335,0,-124.957	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.606	0/0:101:101,0:101:3607:0:0:0,-30.404,-324.836	0/0:73:73,0:73:2595:0:0:0,-21.9752,-233.797	0/0:196:196,0:196:6980:0:0:0,-59.0019,-628.144	0/0:87:87,0:87:3094:0:0:0,-26.1896,-278.684	0/0:147:147,0:147:5247:0:0:0,-44.2514,-472.355	0/0:163:163,0:163:5789:0:0:0,-49.0679,-521.124	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/1:88:39,48:39:1396:48:1720:-128.575,0,-99.4286	0/1:60:25,35:25:879:35:1252:-94.8949,0,-61.365	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/1:108:40,68:40:1424:68:2432:-186.575,0,-95.9462	0/0:51:50,1:50:1784:1:36:0,-11.7543,-157.225	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:16:10,6:10:356:6:201:-13.6006,0,-27.5648	0/1:70:39,31:39:1392:31:1112:-79.2937,0,-104.507	0/1:124:70,54:70:2500:54:1944:-137.867,0,-187.925	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:167:167,0:167:5976:0:0:0,-50.272,-537.944	0/1:149:76,73:76:2707:73:2605:-189.746,0,-199.021	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.616	0/0:82:82,0:82:2905:0:0:0,-24.6845,-261.686	0/0:150:150,0:150:5332:0:0:0,-45.1545,-480.014	0/1:79:8,71:8:284:71:2544:-205.254,0,-2.12198	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:66:66,0:66:2347:0:0:0,-19.868,-211.489	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.161	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:86:47,39:47:1680:39:1392:-99.6663,0,-125.599	0/1:69:36,33:36:1284:33:1176:-85.3701,0,-95.0923	0/0:197:197,0:197:7025:0:0:0,-59.3029,-632.314	0/1:153:86,67:86:3080:67:2408:-170.863,0,-231.371	0/1:102:50,52:50:1783:52:1872:-138.052,0,-130.047	0/0:117:117,0:117:4161:0:0:0,-35.2205,-374.628	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:135:56,79:56:1991:79:2814:-212.857,0,-138.822	0/0:83:82,1:82:2914:1:36:0,-21.3872,-258.897	0/0:218:218,0:218:7767:0:0:0,-65.6245,-699.052	0/1:101:46,55:46:1636:55:1967:-146.892,0,-117.094	0/0:80:80,0:80:2801:0:0:0,-24.0824,-252.329	0/1:117:51,66:51:1836:66:2376:-178.8,0,-130.3	0/0:182:180,2:180:6397:2:72:0,-47.9507,-568.986	0/1:52:31,21:31:1101:21:752:-52.3503,0,-83.7448	0/1:74:41,33:41:1464:33:1188:-84.943,0,-109.78	0/0:81:81,0:81:2887:0:0:0,-24.3834,-260.038	0/1:65:43,22:43:1544:22:792:-52.0387,0,-119.686	0/1:104:57,47:57:2020:47:1669:-119.113,0,-150.766	0/1:82:28,54:28:1004:54:1940:-150.164,0,-65.9914	0/0:45:44,1:44:1559:1:36:0,-9.94807,-137.003	0/0:128:128,0:128:4543:0:0:0,-38.5318,-409.038
chr03	27197321	.	ACG	ACT,TCT	211225	PASS	AB=0.468904,0.529083;ABP=40.5539,35.8496;AC=140,48;AF=0.744681,0.255319;AN=188;AO=7314,2389;CIGAR=2M1X,1X1M1X;DP=9726;DPB=9726.33;DPRA=0,0.892466;EPP=14927.2,4891.11;EPPR=0;GTI=1;LEN=1,3;MEANALT=1.79787,2.24528;MQM=59.1529,47.4977;MQMR=0;NS=94;NUMALT=2;ODDS=4.26778;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=258428,83311;QR=0;RO=0;RPL=7203,2354;RPP=14935.7,4891.11;RPPR=0;RPR=111,35;RUN=1,1;SAF=1,0;SAP=15876.5,5190.66;SAR=7313,2389;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:34:0,20,14:0:0:20,14:716,476:-96.7032,-38.4071,-32.3865,-58.6407,0,-54.4263	1/2:229:0,113,116:0:0:113,116:4008,4062:-650.723,-324.388,-290.371,-326.685,0,-291.766	1/2:119:0,38,81:0:0:38,81:1356,2819:-335.418,-224.891,-213.452,-110.879,0,-86.4957	1/1:197:0,196,0:0:0:196,0:6870,0:-617.48,-59.0019,0,-617.48,-59.0019,-617.48	1/1:64:0,64,0:0:0:64,0:2284,0:-205.748,-19.2659,0,-205.748,-19.2659,-205.748	1/1:83:0,83,0:0:0:83,0:2980,0:-268.194,-24.9855,0,-268.194,-24.9855,-268.194	1/2:139:0,66,73:0:0:66,73:2328,2495:-390.643,-201.132,-181.264,-189.857,0,-167.881	1/1:109:0,109,0:0:0:109,0:3823,0:-343.704,-32.8123,0,-343.704,-32.8123,-343.704	1/1:133:0,133,0:0:0:133,0:4760,0:-428.433,-40.037,0,-428.433,-40.037,-428.433	1/2:130:0,54,76:0:0:54,76:1872,2623:-364.098,-211.952,-195.696,-152.491,0,-129.613	1/2:102:0,49,53:0:0:49,53:1743,1870:-293.417,-151.382,-136.632,-142.388,0,-126.433	1/2:86:0,49,37:0:0:49,37:1748,1304:-246.246,-103.93,-89.1791,-142.666,0,-131.528	1/1:100:0,100,0:0:0:100,0:3573,0:-321.655,-30.103,0,-321.655,-30.103,-321.655	1/1:122:0,122,0:0:0:122,0:4354,0:-391.884,-36.7257,0,-391.884,-36.7257,-391.884	1/1:73:0,73,0:0:0:73,0:2588,0:-233.011,-21.9752,0,-233.011,-21.9752,-233.011	1/2:100:0,52,48:0:0:52,48:1856,1691:-287.687,-136.437,-120.784,-151.603,0,-137.153	1/2:91:0,53,38:0:0:53,38:1900,1339:-262.378,-107.514,-91.5598,-155.215,0,-143.776	1/1:77:0,76,0:0:0:76,0:2711,0:-243.648,-22.8783,0,-243.648,-22.8783,-243.648	1/2:77:0,40,37:0:0:40,37:1432,1294:-220.193,-103.545,-91.5041,-116.643,0,-105.505	1/1:187:0,185,1:0:0:185,1:6442,23:-579.139,-55.6906,0,-577.372,-53.9873,-577.071	1/1:202:0,202,0:0:0:202,0:7174,0:-645.013,-60.8081,0,-645.013,-60.8081,-645.013	1/2:69:0,16,52:0:0:16,52:560,1805:-191.424,-145.863,-141.046,-45.5515,0,-29.898	1/1:108:0,108,0:0:0:108,0:3813,0:-342.212,-32.5112,0,-342.212,-32.5112,-342.212	1/2:129:0,57,71:0:0:57,71:2007,2496:-360.729,-197.428,-180.27,-163.291,0,-141.918	1/1:31:0,31,0:0:0:31,0:1081,0:-97.5647,-9.33193,0,-97.5647,-9.33193,-97.5647	1/2:238:0,122,116:0:0:122,116:4297,4039:-675.921,-326.164,-289.438,-350.106,0,-315.187	1/1:164:0,163,0:0:0:163,0:5761,0:-517.98,-49.0679,0,-517.98,-49.0679,-517.98	1/2:41:0,24,17:0:0:24,17:852,594:-117.755,-48.3295,-41.1048,-69.7757,0,-64.6582	1/1:194:0,194,0:0:0:194,0:6835,0:-614.908,-58.3998,0,-614.908,-58.3998,-614.908	1/1:160:0,158,0:0:0:158,0:5581,0:-500.754,-47.5627,0,-500.754,-47.5627,-500.754	1/1:152:0,152,0:0:0:152,0:5385,0:-484.486,-45.7566,0,-484.486,-45.7566,-484.486	1/1:12:0,12,0:0:0:12,0:409,0:-37.135,-3.61236,0,-37.135,-3.61236,-37.135	1/2:20:0,4,16:0:0:4,16:144,571:-58.3343,-46.5836,-45.3795,-12.1095,0,-7.29302	1/2:9:0,3,6:0:0:3,6:108,210:-25.7292,-16.9113,-16.0082,-9.17114,0,-7.36496	1/1:9:0,9,0:0:0:9,0:304,0:-27.6729,-2.70927,0,-27.6729,-2.70927,-27.6729	1/1:20:0,20,0:0:0:20,0:708,0:-63.7364,-6.0206,0,-63.7364,-6.0206,-63.7364	1/1:186:0,185,0:0:0:185,0:6512,0:-585.504,-55.6906,0,-585.504,-55.6906,-585.504	1/2:162:0,69,91:0:0:69,91:2403,3177:-450.874,-255.658,-234.887,-195.235,0,-167.841	1/2:133:0,80,53:0:0:80,53:2860,1873:-382.434,-149.392,-125.309,-233.393,0,-217.438	1/2:6:0,4,2:0:0:4,2:144,72:-17.916,-6.18746,-4.98334,-12.0865,0,-11.4845	1/2:148:0,67,81:0:0:67,81:2353,2840:-420.539,-229.171,-209.002,-191.717,0,-167.334	1/1:70:0,70,0:0:0:70,0:2458,0:-221.366,-21.0721,0,-221.366,-21.0721,-221.366	1/2:129:0,54,74:0:0:54,74:1897,2583:-362.328,-208.036,-191.78,-154.316,0,-132.039	1/2:79:0,39,40:0:0:39,40:1396,1396:-227.152,-113.324,-101.584,-114.181,0,-102.139	1/1:72:0,72,0:0:0:72,0:2568,0:-231.083,-21.6742,0,-231.083,-21.6742,-231.083	1/1:88:0,88,0:0:0:88,0:3120,0:-280.963,-26.4906,0,-280.963,-26.4906,-280.963	1/1:124:0,124,0:0:0:124,0:4412,0:-396.747,-37.3277,0,-396.747,-37.3277,-396.747	1/1:109:0,109,0:0:0:109,0:3888,0:-350.012,-32.8123,0,-350.012,-32.8123,-350.012	1/1:81:0,80,1:0:0:80,1:2824,34:-253.962,-24.0824,0,-251.213,-20.9942,-250.912	1/1:115:0,115,0:0:0:115,0:4034,0:-363.118,-34.6185,0,-363.118,-34.6185,-363.118	1/1:205:0,205,0:0:0:205,0:7125,0:-641.136,-61.7112,0,-641.136,-61.7112,-641.136	1/1:16:0,16,0:0:0:16,0:568,0:-51.4274,-4.81648,0,-51.4274,-4.81648,-51.4274	1/2:132:0,47,84:0:0:47,84:1634,2925:-367.026,-234.212,-220.064,-132.888,0,-107.602	1/2:59:0,26,33:0:0:26,33:917,1155:-168.6,-93.9339,-86.1071,-75.0169,0,-65.0829	1/2:25:0,17,8:0:0:17,8:604,259:-69.7955,-21.0284,-15.9109,-49.0981,0,-46.6898	1/2:146:0,67,78:0:0:67,78:2341,2699:-407.723,-217.45,-197.281,-190.262,0,-166.781	1/1:56:0,56,0:0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chr03	27276214	.	C	A	164673	PASS	AB=0.417885;ABP=243.373;AC=136;AF=0.731183;AN=186;AO=6255;CIGAR=1X;DP=8677;DPB=8677;DPRA=19.4539;EPP=1480.5;EPPR=44.8749;GTI=0;LEN=1;MEANALT=1.02247;MQM=59.8787;MQMR=59.7975;NS=93;NUMALT=1;ODDS=2.12694;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222070;QR=85762;RO=2420;RPL=0;RPP=13585.6;RPPR=5240.62;RPR=6255;RUN=1;SAF=2096;SAP=1480.5;SAR=4159;SRF=1104;SRP=43.3387;SRR=1316;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:28,7:28:986:7:252:-12.4929,0,-78.4087	0/1:77:41,36:41:1464:36:1288:-93.0443,0,-108.877	0/1:117:80,37:80:2822:37:1311:-83.0704,0,-219	1/1:143:0,143:0:0:143:5095:-458.688,-43.0473,0	1/1:25:0,25:0:0:25:880:-79.5177,-7.52575,0	1/1:35:0,35:0:0:35:1222:-110.28,-10.5361,0	0/1:113:56,57:56:1977:57:2010:-147.151,0,-144.175	1/1:74:0,74:0:0:74:2611:-235.237,-22.2762,0	1/1:51:1,50:1:36:50:1730:-152.38,-11.7543,0	0/1:98:71,27:71:2536:27:968:-57.9341,0,-198.904	0/1:155:83,72:83:2928:72:2567:-184.611,0,-217.09	0/1:165:129,36:129:4595:36:1249:-63.038,0,-364.016	1/1:98:0,98:0:0:98:3454:-311.07,-29.5009,0	1/1:141:0,141:0:0:141:4999:-450.057,-42.4452,0	1/1:191:0,191:0:0:191:6807:-612.651,-57.4967,0	0/1:143:87,56:87:3052:56:1999:-137.127,0,-231.856	0/1:144:80,64:80:2837:64:2272:-161.386,0,-212.219	1/1:98:3,95:3:108:95:3350:-291.643,-19.4267,0	0/1:63:39,24:39:1358:24:860:-58.7569,0,-103.548	1/1:121:1,119:1:36:119:4264:-380.337,-32.8852,0	1/1:87:0,87:0:0:87:3060:-275.599,-26.1896,0	0/1:23:16,7:16:576:7:248:-15.7396,0,-45.2513	0/1:61:29,32:29:1040:32:1152:-85.6273,0,-75.5515	0/1:102:49,53:49:1748:53:1868:-137.692,0,-126.899	1/1:47:0,47:0:0:47:1672:-150.765,-14.1484,0	0/1:198:105,93:105:3760:93:3335:-240.742,0,-278.993	1/1:126:0,126:0:0:126:4420:-397.969,-37.9298,0	0/1:90:48,42:48:1698:42:1500:-108.202,0,-126.005	1/1:154:0,154:0:0:154:5498:-494.946,-46.3586,0	1/1:56:0,56:0:0:56:1982:-178.653,-16.8577,0	1/1:77:0,77:0:0:77:2729:-245.78,-23.1793,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7108	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:424:0,424:0:0:424:15060:-1355.07,-127.637,0	0/1:70:33,37:33:1169:37:1285:-94.744,0,-84.4432	0/1:84:59,25:59:2068:25:891:-55.2223,0,-161.087	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:68:36,32:36:1283:32:1131:-81.6277,0,-95.2944	1/1:66:0,66:0:0:66:2356:-212.294,-19.868,0	0/1:90:44,46:44:1576:46:1631:-119.985,0,-115.038	0/1:186:102,84:102:3601:84:3020:-216.036,0,-268.302	1/1:160:0,160:0:0:160:5681:-511.391,-48.1648,0	1/1:93:0,93:0:0:93:3340:-300.544,-27.9958,0	1/1:27:0,27:0:0:27:955:-86.2648,-8.12781,0	1/1:131:0,131:0:0:131:4672:-420.641,-39.4349,0	1/1:74:0,74:0:0:74:2619:-234.487,-22.2762,0	1/1:85:0,85:0:0:85:3026:-272.482,-25.5876,0	1/1:88:0,88:0:0:88:3126:-281.563,-26.4906,0	.:.:.:.:.:.:.:.	0/1:73:44,29:44:1558:29:1035:-71.4879,0,-118.519	0/1:34:17,17:17:608:17:600:-44.0942,0,-44.8161	0/1:5:2,3:2:72:3:108:-8.37339,0,-5.33157	0/1:56:37,19:37:1324:19:667:-43.4923,0,-102.594	1/1:57:2,55:2:68:55:1957:-169.946,-10.701,0	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0162	0/1:59:31,28:31:1082:28:1004:-72.9151,0,-79.9071	0/1:204:109,95:109:3875:95:3407:-245.428,0,-287.534	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:48:0,48:0:0:48:1703:-153.411,-14.4494,0	0/1:124:75,49:75:2649:49:1705:-116.403,0,-201.329	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:39:0,39:0:0:39:1364:-122.429,-11.7402,0	1/1:112:1,111:1:36:111:3966:-353.53,-30.1171,0	0/1:98:67,31:67:2359:31:1097:-69.5347,0,-182.43	1/1:65:0,64:0:0:64:2284:-205.601,-19.2659,0	1/1:36:0,36:0:0:36:1263:-113.972,-10.8371,0	1/1:197:0,197:0:0:197:6992:-629.348,-59.3029,0	0/1:15:7,8:7:248:8:288:-21.7496,0,-18.1487	1/1:25:0,25:0:0:25:860:-77.7114,-7.52575,0	0/1:52:38,14:38:1347:14:487:-28.5056,0,-105.876	1/1:145:0,145:0:0:145:5087:-457.594,-43.6494,0	0/1:131:67,64:67:2365:64:2267:-164.829,0,-173.671	0/1:90:60,30:60:2136:30:1072:-69.6998,0,-165.415	1/1:39:2,37:2:72:37:1297:-110.192,-4.90345,0	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:71:50,21:50:1788:21:752:-46.6331,0,-139.81	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	1/1:151:0,151:0:0:151:5381:-484.391,-45.4555,0	0/1:180:81,99:81:2870:99:3472:-258.505,0,-204.35	1/1:200:0,200:0:0:200:7141:-642.736,-60.206,0	0/1:208:106,102:106:3742:102:3621:-263.451,0,-274.358	1/1:263:1,262:1:36:262:9350:-837.854,-75.5726,0	0/1:67:38,29:38:1343:29:1040:-73.7454,0,-100.992	0/1:104:66,38:66:2335:38:1353:-90.7621,0,-178.907	1/1:92:0,92:0:0:92:3256:-293.26,-27.6948,0	0/1:142:83,59:83:2925:59:2068:-143.624,0,-220.709	0/1:171:106,65:106:3762:65:2326:-158.106,0,-287.257	0/1:121:78,43:78:2768:43:1536:-102.103,0,-212.936	1/1:61:0,61:0:0:61:2169:-195.475,-18.3628,0	1/1:269:0,269:0:0:269:9558:-860.177,-80.9771,0
chr03	27435217	.	G	T	160832	PASS	AB=0.501508;ABP=3.08891;AC=140;AF=0.752688;AN=186;AO=7529;CIGAR=1X;DP=9527;DPB=9527;DPRA=0;EPP=16317.3;EPPR=4304.77;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9827;MQMR=59.9735;NS=93;NUMALT=1;ODDS=0.366865;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268568;QR=71242;RO=1997;RPL=4;RPP=16317.3;RPPR=4330.76;RPR=7525;RUN=1;SAF=7529;SAP=16352;SAR=0;SRF=1994;SRP=4313.42;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:8,19:8:279:19:680:-53.4014,0,-17.3197	0/1:77:48,29:48:1724:29:1040:-70.7351,0,-132.266	0/1:315:164,151:164:5861:151:5401:-391.395,0,-432.776	1/1:256:0,256:0:0:256:9107:-819.608,-77.0637,0	0/1:42:17,25:17:608:25:892:-67.9564,0,-42.4088	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:79:40,39:40:1421:39:1384:-101.077,0,-104.404	1/1:139:0,139:0:0:139:4959:-446.46,-41.8432,0	1/1:135:0,135:0:0:135:4806:-432.206,-40.6391,0	0/1:89:44,45:44:1561:45:1600:-117.499,0,-113.988	0/1:56:29,27:29:1036:27:972:-70.9402,0,-76.6962	0/1:98:48,50:48:1703:50:1788:-131.702,0,-124.054	1/1:89:0,89:0:0:89:3161:-284.698,-26.7917,0	1/1:59:0,59:0:0:59:2093:-188.639,-17.7608,0	0/1:58:30,28:30:1080:28:1004:-73.2161,0,-80.0535	0/1:66:40,26:40:1440:26:932:-64.3309,0,-110.03	0/1:51:31,20:31:1112:20:720:-49.7762,0,-85.0388	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:39:21,18:21:744:18:644:-46.5504,0,-55.5442	1/1:214:0,214:0:0:214:7614:-685.298,-64.4204,0	1/1:172:0,172:0:0:172:6103:-549.371,-51.7772,0	0/1:107:64,42:64:2284:42:1508:-103.746,0,-173.553	0/1:151:65,86:65:2298:86:3044:-228.734,0,-161.623	0/1:57:16,41:16:572:41:1459:-114.447,0,-34.6547	1/1:118:0,118:0:0:118:4219:-379.889,-35.5215,0	0/1:333:155,178:155:5518:178:6352:-471.53,0,-396.503	1/1:330:0,330:0:0:330:11763:-1058.52,-99.3399,0	0/1:38:17,21:17:604:21:752:-56.5671,0,-43.2515	1/1:364:1,363:1:36:363:12890:-1155.83,-105.977,0	1/1:118:1,117:1:36:117:4185:-373.232,-31.9233,0	1/1:121:0,121:0:0:121:4287:-386.006,-36.4246,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:238:0,238:0:0:238:8507:-765.631,-71.6451,0	0/1:109:59,50:59:2105:50:1760:-125.868,0,-156.905	0/1:47:23,24:23:828:24:839:-61.6789,0,-60.6957	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:138:61,77:61:2173:77:2760:-207.099,0,-154.293	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:59:52,7:52:1857:7:248:-4.90342,0,-149.647	0/1:75:38,37:38:1364:37:1324:-96.8848,0,-100.483	1/1:55:0,55:0:0:55:1959:-176.585,-16.5567,0	1/1:117:0,117:0:0:117:4154:-374.043,-35.2205,0	1/1:129:0,129:0:0:129:4578:-412.186,-38.8329,0	1/1:102:0,102:0:0:102:3636:-327.446,-30.7051,0	1/1:130:1,129:1:36:129:4597:-410.295,-35.5356,0	1/1:136:0,136:0:0:136:4877:-439.081,-40.9401,0	1/1:130:1,129:1:36:129:4609:-411.375,-35.5356,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:123:52,71:52:1859:71:2539:-191.734,0,-130.562	0/1:97:44,53:44:1580:53:1874:-139.732,0,-113.292	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:142:66,76:66:2368:76:2736:-203.736,0,-170.632	1/1:89:0,89:0:0:89:3163:-284.895,-26.7917,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:47:21,26:21:756:26:909:-67.9759,0,-54.2188	0/1:98:46,52:46:1637:52:1860:-138.179,0,-118.116	.:.:.:.:.:.:.:.	1/1:244:0,244:0:0:244:8713:-784.163,-73.4513,0	0/1:236:112,124:112:3968:124:4426:-327.469,0,-286.269	1/1:83:0,83:0:0:83:2946:-265.373,-24.9855,0	1/1:94:0,94:0:0:94:3372:-303.694,-28.2968,0	1/1:237:6,231:6:216:231:8220:-720.026,-51.554,0	0/1:173:112,61:112:4016:61:2184:-144.748,0,-309.55	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:148:0,148:0:0:148:5299:-477.044,-44.5524,0	0/1:95:60,35:60:2114:35:1256:-84.7474,0,-161.841	1/1:209:0,209:0:0:209:7473:-672.613,-62.9153,0	0/1:200:96,104:96:3444:104:3717:-274.524,0,-249.34	0/1:88:37,51:37:1308:51:1820:-137.591,0,-91.5281	1/1:112:0,112:0:0:112:3982:-358.569,-33.7154,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:133:56,77:56:1989:77:2768:-209.324,0,-139.245	1/1:133:1,132:1:36:132:4721:-421.451,-36.4387,0	1/1:291:1,290:1:36:290:10353:-928.094,-84.0015,0	0/1:54:21,33:21:744:33:1184:-90.6127,0,-51.0287	1/1:78:0,78:0:0:78:2775:-249.991,-23.4803,0	0/1:39:16,23:16:572:23:824:-62.7431,0,-40.0733	1/1:115:3,112:3:108:112:4024:-352.272,-24.5433,0	0/1:28:15,13:15:532:13:464:-33.6687,0,-39.7842	0/1:69:30,39:30:1072:39:1400:-105.528,0,-76.0214	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:34:14,20:14:495:20:716:-54.5327,0,-34.648	0/1:91:39,52:39:1392:52:1872:-141.365,0,-98.1853	0/1:69:48,21:48:1716:21:747:-46.7832,0,-133.955	1/1:170:0,170:0:0:170:6062:-545.685,-51.1751,0	1/1:109:0,109:0:0:109:3888:-350.114,-32.8123,0
chr03	27561120	.	C	T	45981.8	PASS	AB=0.534683;ABP=55.1274;AC=50;AF=0.265957;AN=188;AO=2677;CIGAR=1X;DP=10068;DPB=10068;DPRA=0.971844;EPP=5816.04;EPPR=16045.8;GTI=0;LEN=1;MEANALT=1.01724;MQM=51.4662;MQMR=59.6477;NS=94;NUMALT=1;ODDS=0.64134;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96011;QR=264502;RO=7388;RPL=0;RPP=5816.04;RPPR=16045.8;RPR=2677;RUN=1;SAF=0;SAP=5816.04;SAR=2677;SRF=0;SRP=16045.8;SRR=7388;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:35,15:35:1256:15:525:-32.4115,0,-98.2938	0/1:194:92,102:92:3308:102:3672:-271.202,0,-239.521	0/1:150:55,95:55:1961:95:3405:-260.334,0,-131.608	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.478	0/1:96:42,54:42:1504:54:1944:-145.554,0,-106.737	0/1:120:57,63:57:2036:63:2264:-167.352,0,-147.119	0/1:122:67,55:67:2397:55:1980:-141.288,0,-179.242	0/0:102:102,0:102:3649:0:0:0,-30.7051,-328.577	0/0:133:132,0:132:4748:0:0:0,-39.736,-427.084	0/1:118:64,54:64:2281:54:1940:-138.918,0,-169.985	0/1:52:26,26:26:936:26:932:-67.9235,0,-68.8801	0/1:73:34,39:34:1220:39:1389:-102.934,0,-88.1316	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.471	0/0:98:98,0:98:3520:0:0:0,-29.5009,-316.834	0/1:68:36,32:36:1296:32:1152:-83.2444,0,-96.4657	0/1:43:18,25:18:648:25:896:-67.8165,0,-45.6912	0/1:86:34,52:34:1205:52:1872:-141.994,0,-82.8539	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.338	0/1:17:6,11:6:216:11:396:-30.7748,0,-14.6647	0/0:132:131,1:131:4685:1:36:0,-36.1467,-418.162	0/0:151:151,0:151:5394:0:0:0,-45.4555,-485.564	0/1:180:52,128:52:1849:128:4543:-353.056,0,-112.503	0/1:120:52,68:52:1848:68:2440:-182.864,0,-130.457	0/1:209:103,106:103:3651:106:3808:-277.186,0,-265.868	0/0:126:126,0:126:4502:0:0:0,-37.9298,-405.242	0/1:326:153,173:153:5469:173:6214:-458.182,0,-393.82	0/0:277:277,0:277:9932:0:0:0,-83.3853,-893.196	0/1:48:20,28:20:716:28:1008:-76.358,0,-50.3183	0/0:191:191,0:191:6848:0:0:0,-57.4967,-616.006	0/0:174:174,0:174:6245:0:0:0,-52.3792,-562.123	0/0:130:129,1:129:4617:1:36:0,-35.5447,-412.008	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:26:10,15:10:356:15:540:-40.7085,0,-24.4969	0/1:11:4,7:4:144:7:252:-19.6597,0,-10.0023	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.86	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8424	0/0:219:218,0:218:7825:0:0:0,-65.6245,-703.631	0/1:257:143,114:143:5106:114:4052:-285.267,0,-382.099	0/1:56:32,24:32:1148:24:864:-60.3692,0,-86.7606	0/1:5:4,1:4:144:1:36:-2.08408,0,-11.8001	0/1:151:64,87:64:2300:87:3132:-235.572,0,-161.797	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9583	0/1:100:51,49:51:1832:49:1764:-128.541,0,-135.041	0/1:80:38,42:38:1368:42:1512:-111.871,0,-99.3058	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.849	0/0:110:110,0:110:3956:0:0:0,-33.1133,-356.212	0/0:137:137,0:137:4909:0:0:0,-41.2411,-441.84	0/0:189:189,0:189:6777:0:0:0,-56.8947,-609.958	0/0:164:163,1:163:5841:1:36:0,-45.7797,-521.873	0/0:135:135,0:135:4818:0:0:0,-40.639,-433.761	0/0:190:189,1:189:6750:1:36:0,-53.8496,-604.21	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:162:63,99:63:2268:99:3560:-270.132,0,-155.607	0/1:23:17,6:17:608:6:216:-12.5942,0,-48.1283	0/1:24:7,17:7:252:17:607:-47.5181,0,-15.796	0/1:122:62,60:62:2224:60:2156:-156.622,0,-163.698	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.745	0/1:20:8,12:8:288:12:432:-33.0925,0,-20.2468	0/1:48:27,21:27:972:21:756:-53.7364,0,-73.3485	0/1:153:72,81:72:2558:81:2916:-214.861,0,-184.374	0/1:121:73,48:73:2624:48:1720:-117.722,0,-199.941	0/1:11:6,5:6:216:5:176:-12.8371,0,-16.4792	0/0:118:118,0:118:4221:0:0:0,-35.5215,-380.059	0/1:237:98,139:98:3520:139:4977:-374.57,0,-245.262	0/0:94:93,1:93:3332:1:36:0,-24.7076,-296.467	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.776	0/0:155:152,3:152:5399:3:108:0,-36.6098,-475.953	0/1:87:28,59:28:989:59:2120:-163.745,0,-63.1324	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:120:120,0:120:4316:0:0:0,-36.1236,-388.263	0/0:100:100,0:100:3581:0:0:0,-30.103,-322.471	0/1:32:10,22:10:356:22:788:-61.2168,0,-22.7483	0/0:165:165,0:165:5893:0:0:0,-49.6699,-530.298	0/1:106:42,64:42:1482:64:2300:-174.623,0,-101.753	0/0:188:188,0:188:6722:0:0:0,-56.5936,-604.123	0/1:224:103,121:103:3700:121:4329:-320.676,0,-265.563	0/1:221:97,124:97:3488:124:4445:-331.72,0,-247.568	0/0:141:140,1:140:5028:1:36:0,-38.856,-449.043	0/1:21:8,13:8:273:13:468:-36.0313,0,-18.5783	0/1:98:52,46:52:1868:46:1652:-118.868,0,-138.898	0/0:111:111,0:111:3965:0:0:0,-33.4143,-356.999	0/0:194:194,0:194:6972:0:0:0,-58.3998,-627.5	0/1:113:64,49:64:2288:49:1764:-124.189,0,-172.123	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.609	0/1:90:44,46:44:1576:46:1641:-120.273,0,-115.039	0/0:150:149,1:149:5340:1:36:0,-41.5653,-477	0/1:41:23,18:23:824:18:633:-44.6913,0,-62.0266	0/1:74:35,39:35:1260:39:1400:-103.47,0,-91.3266	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.568	0/1:24:13,11:13:453:11:396:-28.6676,0,-33.646	0/1:91:46,45:46:1633:45:1615:-117.287,0,-119.847	0/1:87:30,57:30:1080:57:2052:-158.262,0,-71.3236	0/0:121:121,0:121:4325:0:0:0,-36.4246,-389.181	0/0:98:98,0:98:3505:0:0:0,-29.5009,-315.634
chr03	27564002	.	CCC	TCT,CCT	423845	PASS	AB=0.607253,0.388599;ABP=653.256,704.535;AC=139,49;AF=0.739362,0.260638;AN=188;AO=13642,2550;CIGAR=1X1M1X,2M1X;DP=16261;DPB=16262;DPRA=0,0.949558;EPP=29617.6,5540.26;EPPR=11.6962;GTI=5;LEN=3,1;MEANALT=2.34043,2.58462;MQM=59.3322,59.0212;MQMR=56.5;NS=94;NUMALT=2;ODDS=1.60165;PAIRED=0,0;PAIREDR=0;PAO=2,0.5;PQA=68,0;PQR=0;PRO=0.5;QA=470267,90504;QR=142;RO=4;RPL=7438,2333;RPP=245.396,3815.82;RPPR=3.0103;RPR=6204,217;RUN=1,1;SAF=7437,2333;SAP=244.611,3815.82;SAR=6205,217;SRF=2;SRP=3.0103;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,20,10:0:0:20,10:680,356:-84.4164,-29.3709,-23.3503,-55.3957,0,-52.3854	1/2:117:0,76,41:0:0:76,41:2598,1455:-329.034,-118.275,-95.3971,-211.107,0,-198.765	1/2:350:1,158,190:1:34:158,190:5502,6710:-990.498,-543.499,-498.694,-444.617,0,-390.179	1/1:482:0,479,1:0:0:479,1:16424,36:-1476.98,-144.193,0,-1474.04,-141.242,-1473.74	1/2:127:0,86,41:0:0:86,41:2986,1472:-362.428,-120.434,-94.5453,-242.349,0,-230.007	1/2:112:0,59,52:0:0:59,52:2050,1864:-318.789,-152.173,-134.412,-166.755,0,-151.101	1/2:218:0,127,89:0:0:127,89:4335,3166:-609.539,-257.845,-219.614,-351.728,0,-324.936	1/1:374:0,372,1:0:0:372,1:12831,36:-1153.42,-111.983,0,-1150.48,-109.046,-1150.18	1/1:250:0,248,2:0:0:248,2:8598,72:-772.755,-74.6554,0,-766.88,-68.4208,-766.278	1/2:140:0,114,25:0:0:114,25:3884,888:-386.823,-71.7664,-37.449,-315.162,0,-307.636	1/2:135:0,73,62:0:0:73,62:2518,2201:-384.235,-179.69,-157.715,-204.895,0,-186.231	1/2:168:0,115,52:0:0:115,52:3981,1847:-474.014,-150.576,-115.957,-323.511,0,-307.857	1/1:169:0,168,0:0:0:168,0:5882,0:-528.373,-50.573,0,-528.373,-50.573,-528.373	1/1:174:0,173,1:0:0:173,1:6011,36:-540.591,-52.0782,0,-537.654,-48.7809,-537.353	1/2:89:0,61,28:0:0:61,28:2092,1004:-252.077,-82.247,-63.8842,-170.183,0,-161.754	1/2:107:0,66,41:0:0:66,41:2284,1447:-303.724,-118.183,-98.3149,-185.891,0,-173.549	1/2:105:0,74,31:0:0:74,31:2492,1084:-290.345,-88.5345,-66.2583,-202.156,0,-192.824	1/1:93:0,92,0:0:0:92,0:3175,0:-285.45,-27.6948,0,-285.45,-27.6948,-285.45	1/2:87:0,56,31:0:0:56,31:1945,1097:-247.729,-89.7061,-72.8484,-158.374,0,-149.042	1/1:250:0,247,1:0:0:247,1:8610,36:-774.576,-74.3544,0,-771.639,-71.3904,-771.338	1/1:272:0,272,0:0:0:272,0:9333,0:-839.702,-81.8802,0,-839.702,-81.8802,-839.702	1/2:131:0,49,82:0:0:49,82:1698,2888:-372.582,-234.579,-219.829,-138.351,0,-113.667	1/2:173:0,94,77:0:0:94,77:3238,2732:-485.58,-222.656,-194.359,-262.991,0,-239.812	1/2:112:0,73,38:0:0:73,38:2528,1330:-313.537,-108.199,-86.2238,-205.328,0,-193.888	1/1:173:0,172,0:0:0:172,0:6005,0:-540.23,-51.7772,0,-540.23,-51.7772,-540.23	1/2:428:0,212,214:0:0:212,214:7292,7569:-1206.15,-614.354,-550.536,-591.898,0,-527.478	1/1:605:0,599,1:0:0:599,1:20846,36:-1874.87,-180.317,0,-1871.93,-177.371,-1871.63	1/2:64:0,46,18:0:0:46,18:1557,627:-177.494,-51.3359,-37.4885,-126.503,0,-121.085	1/1:431:0,428,0:0:0:428,0:14854,0:-1335.88,-128.841,0,-1335.88,-128.841,-1335.88	1/1:244:0,243,0:0:0:243,0:8296,0:-746.29,-73.1503,0,-746.29,-73.1503,-746.29	1/1:180:0,180,0:0:0:180,0:6196,0:-557.659,-54.1854,0,-557.659,-54.1854,-557.659	1/1:10:0,10,0:0:0:10,0:346,0:-31.4734,-3.0103,0,-31.4734,-3.0103,-31.4734	1/2:28:0,11,16:0:0:11,16:343,559:-72.9904,-45.4619,-42.1506,-27.4993,0,-22.6828	1/2:8:0,5,3:0:0:5,3:180,108:-23.8582,-9.17208,-7.66693,-15.046,0,-14.1429	1/1:21:0,21,0:0:0:21,0:712,0:-64.3815,-6.32163,0,-64.3815,-6.32163,-64.3815	1/1:16:0,16,0:0:0:16,0:571,0:-51.7176,-4.81648,0,-51.7176,-4.81648,-51.7176	1/1:416:0,413,2:0:0:413,2:14189,72:-1276.08,-124.325,0,-1270.21,-118.451,-1269.61	1/2:165:0,122,43:0:0:122,43:4181,1529:-464.348,-124.957,-88.2311,-339.744,0,-326.799	1/2:125:0,84,41:0:0:84,41:2882,1448:-352.201,-118.273,-92.986,-234.278,0,-221.936	1/2:5:0,3,2:0:0:3,2:93,72:-13.6623,-6.23466,-5.33157,-7.76739,0,-7.16533	1/2:199:0,164,34:0:0:164,34:5602,1199:-552.258,-97.6964,-48.3275,-454.63,0,-444.395	1/1:70:0,70,0:0:0:70,0:2410,0:-217.041,-21.0721,0,-217.041,-21.0721,-217.041	1/2:235:1,134,100:1:36:134,100:4645,3569:-665.078,-288.016,-250.616,-374.418,0,-347.253	1/2:121:0,90,31:0:0:90,31:3120,1108:-344.257,-90.6991,-63.6064,-253.913,0,-244.581	1/1:149:0,147,0:0:0:147,0:5031,0:-452.505,-44.2514,0,-452.505,-44.2514,-452.505	1/1:214:0,212,1:0:0:212,1:7233,32:-650.672,-63.8184,0,-648.094,-61.259,-647.793	1/1:232:0,232,0:0:0:232,0:7944,0:-714.872,-69.839,0,-714.872,-69.839,-714.872	1/1:265:0,263,0:0:0:263,0:9030,0:-812.249,-79.1709,0,-812.249,-79.1709,-812.249	1/1:218:0,216,1:0:0:216,1:7386,36:-664.308,-65.0225,0,-661.371,-62.0835,-661.07	1/1:191:0,191,0:0:0:191,0:6597,0:-593.36,-57.4967,0,-593.36,-57.4967,-593.36	1/1:207:0,207,0:0:0:207,0:7179,0:-646.183,-62.3132,0,-646.183,-62.3132,-646.183	1/1:8:0,8,0:0:0:8,0:276,0:-25.1686,-2.40824,0,-25.1686,-2.40824,-25.1686	1/2:201:0,128,72:0:0:128,72:4476,2562:-572.806,-208.803,-170.271,-364.005,0,-342.331	1/2:103:0,39,64:0:0:39,64:1342,2280:-294.649,-185.664,-173.924,-109.333,0,-90.0671	1/1:13:0,12,1:0:0:12,1:374,36:-33.5828,-3.61236,0,-30.6416,-0.315115,-30.3406	1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chr03	27564016	.	A	T	42243.1	PASS	AB=0.396439;ABP=589.045;AC=49;AF=0.260638;AN=188;AO=2504;CIGAR=1X;DP=15607;DPB=15607;DPRA=0.710688;EPP=5414.35;EPPR=28092;GTI=5;LEN=1;MEANALT=1.06897;MQM=59.0359;MQMR=59.3463;NS=94;NUMALT=1;ODDS=4.86235;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88724;QR=465819;RO=13091;RPL=2304;RPP=3841.95;RPPR=218.96;RPR=200;RUN=1;SAF=2301;SAP=3820.09;SAR=203;SRF=7077;SRP=190.444;SRR=6014;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:19,9:19:672:9:316:-20.35,0,-52.2012	0/1:110:71,39:71:2540:39:1362:-89.7636,0,-195.598	0/1:337:150,184:150:5311:184:6563:-489.85,0,-376.921	0/0:464:462,1:462:16474:1:36:0,-136.138,-1477.22	0/1:124:83,41:83:2968:41:1429:-91.5732,0,-229.244	0/1:109:59,50:59:2094:50:1769:-126.679,0,-155.859	0/1:210:120,90:120:4288:90:3223:-226.863,0,-322.805	0/0:349:348,1:348:12323:1:36:0,-101.461,-1104.38	0/0:243:242,1:242:8581:1:36:0,-69.552,-768.002	0/1:137:113,24:113:4025:24:835:-33.5227,0,-321.096	0/1:133:72,61:72:2553:61:2150:-153.73,0,-189.983	0/1:161:107,54:107:3793:54:1918:-124.43,0,-292.874	0/0:166:166,0:166:5911:0:0:0,-49.971,-529.841	0/0:169:169,0:169:6035:0:0:0,-50.8741,-542.969	0/1:85:57,28:57:2023:28:993:-64.095,0,-156.743	0/1:100:63,37:63:2252:37:1311:-88.1879,0,-172.76	0/1:102:70,32:70:2508:32:1124:-70.7547,0,-195.088	0/0:90:90,0:90:3208:0:0:0,-27.0927,-288.441	0/1:88:56,31:56:1986:31:1108:-73.4816,0,-152.361	0/0:239:238,1:238:8454:1:36:0,-68.3479,-757.233	0/0:254:254,0:254:9020:0:0:0,-76.4616,-811.386	0/1:130:49,81:49:1756:81:2865:-218.14,0,-119.19	0/1:167:87,80:87:3076:80:2828:-204.482,0,-226.578	0/1:113:72,41:72:2565:41:1460:-97.6796,0,-196.883	0/0:159:159,0:159:5672:0:0:0,-47.8638,-510.456	0/1:419:209,210:209:7466:210:7431:-539.38,0,-545.392	0/0:568:568,0:568:20191:0:0:0,-170.985,-1816.38	0/1:58:42,16:42:1504:16:551:-32.4548,0,-118.099	0/0:415:415,0:415:14769:0:0:0,-124.927,-1327.85	0/0:236:234,0:234:8338:0:0:0,-70.441,-749.922	0/0:172:172,0:172:6110:0:0:0,-51.7772,-549.839	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2695	0/1:9:5,4:5:176:4:135:-9.77324,0,-13.4748	0/0:19:19,0:19:676:0:0:0,-5.71957,-60.97	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1686	0/0:403:402,0:402:14309:0:0:0,-121.014,-1286.21	0/1:161:117,44:117:4175:44:1551:-91.4152,0,-327.462	0/1:122:82,40:82:2899:40:1393:-88.9393,0,-224.274	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.52358	0/1:189:154,35:154:5496:35:1230:-54.1066,0,-437.791	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.238	0/1:220:126,94:126:4494:94:3360:-236.39,0,-338.175	0/1:115:84,31:84:2999:31:1090:-63.7895,0,-235.153	0/0:137:137,0:137:4859:0:0:0,-41.2411,-437.32	0/0:207:206,0:206:7334:0:0:0,-62.0122,-659.647	0/0:224:224,0:224:7977:0:0:0,-67.4307,-717.655	0/0:249:249,0:249:8849:0:0:0,-74.9565,-796.127	0/0:209:208,1:208:7410:1:36:0,-59.317,-663.171	0/0:177:177,0:177:6294:0:0:0,-53.2823,-566.211	0/0:200:200,0:200:7164:0:0:0,-60.206,-644.782	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9008	0/1:196:125,71:125:4449:71:2526:-168.589,0,-340.862	0/1:99:39,60:39:1384:60:2103:-159.236,0,-95.0569	0/0:12:11,1:11:392:1:36:0,-0.0140849,-31.9153	0/1:195:118,77:118:4193:77:2756:-189.581,0,-318.789	0/0:72:71,1:71:2531:1:36:0,-18.0759,-224.41	0/1:23:10,13:10:356:13:456:-34.3306,0,-25.4576	0/1:24:8,16:8:288:16:561:-43.4012,0,-19.0427	0/1:181:106,75:106:3796:75:2684:-187.262,0,-286.634	0/1:171:118,53:118:4157:53:1883:-118.271,0,-322.782	0/1:16:4,12:4:144:12:424:-33.6799,0,-8.49714	0/0:310:310,0:310:10997:0:0:0,-93.3193,-989.183	0/1:219:138,81:138:4917:81:2896:-194.95,0,-376.542	0/0:156:156,0:156:5499:0:0:0,-46.9607,-494.476	0/0:172:172,0:172:6152:0:0:0,-51.7772,-553.666	0/0:272:272,0:272:9708:0:0:0,-81.8802,-872.207	0/1:254:98,156:98:3480:156:5514:-419.927,0,-236.912	0/0:109:109,0:109:3895:0:0:0,-32.8123,-348.879	0/0:132:132,0:132:4713:0:0:0,-39.736,-424.045	0/0:131:131,0:131:4662:0:0:0,-39.4349,-419.628	0/1:45:28,17:28:989:17:600:-40.7828,0,-75.7726	0/0:208:208,0:208:7420:0:0:0,-62.6142,-667.157	0/1:80:49,31:49:1748:31:1086:-73.9652,0,-133.354	0/0:461:459,0:459:16287:0:0:0,-138.173,-1464.87	0/1:183:136,47:136:4838:47:1680:-96.3986,0,-380.336	0/1:222:128,94:128:4554:94:3321:-232.27,0,-343.14	0/0:227:227,0:227:8065:0:0:0,-68.3338,-725.225	0/1:11:10,1:10:352:1:36:-0.286945,0,-28.6619	0/1:191:135,56:135:4806:56:1996:-122.395,0,-375.059	0/0:205:205,0:205:7238:0:0:0,-61.7111,-650.318	0/0:432:432,0:432:15361:0:0:0,-130.045,-1382.02	0/1:93:69,24:69:2460:24:856:-48.6626,0,-193.625	0/0:138:138,0:138:4915:0:0:0,-41.5421,-442.386	0/1:96:77,19:77:2738:19:684:-32.9881,0,-217.577	0/0:270:268,2:268:9549:2:72:0,-74.4414,-852.259	0/1:28:25,3:25:888:3:100:-0.901601,0,-71.6132	0/1:106:65,41:65:2316:41:1464:-100.147,0,-176.549	0/0:134:134,0:134:4788:0:0:0,-40.338,-430.794	0/1:92:58,34:58:2046:34:1190:-79.7088,0,-156.669	0/1:225:129,96:129:4620:96:3413:-239.652,0,-348.186	0/1:85:41,44:41:1464:44:1528:-112.221,0,-106.469	0/0:182:180,1:180:6389:1:36:0,-51.248,-571.333	0/0:242:242,0:242:8614:0:0:0,-72.8493,-775.155
chr03	27567408	.	CC	CG,TG	165124	PASS	AB=0.447519,0.551341;ABP=86.8864,83.2792;AC=136,48;AF=0.73913,0.26087;AN=184;AO=5697,1943;CIGAR=1M1X,2X;DP=7651;DPB=7651.5;DPRA=28.0147,0.920515;EPP=12365.2,4222.18;EPPR=5.18177;GTI=1;LEN=1,2;MEANALT=1.68132,2.09434;MQM=59.9419,59.9285;MQMR=60;NS=92;NUMALT=2;ODDS=6.34564;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=203648,68957;QR=34;RO=1;RPL=5697,1943;RPP=12373.9,4222.18;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=1,0;SAP=12365.2,4222.18;SAR=5696,1943;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:56:0,29,27:0:0:29,27:1032,958:-161.579,-78.4077,-69.6779,-83.5244,0,-75.3966	1/2:68:0,27,41:0:0:27,41:968,1435:-196.04,-117.086,-108.958,-79.3096,0,-66.9673	1/2:155:0,53,102:0:0:53,102:1904,3615:-450.177,-294.852,-278.897,-155.683,0,-124.978	1/1:206:0,206,0:0:0:206,0:7364,0:-662.808,-62.0122,0,-662.808,-62.0122,-662.808	1/2:70:0,29,41:0:0:29,41:1044,1447:-203.371,-118.183,-109.453,-85.5449,0,-73.2027	1/2:25:0,13,12:0:0:13,12:464,430:-73.2544,-35.4277,-31.5144,-38.1841,0,-34.5718	1/2:125:1,56,68:1:34:56,68:2008,2424:-358.324,-194.847,-180.747,-161.037,0,-143.325	1/1:124:0,124,0:0:0:124,0:4408,0:-396.893,-37.3277,0,-396.893,-37.3277,-396.893	1/1:88:0,85,1:0:0:85,1:3056,36:-274.895,-25.5876,0,-271.957,-22.6501,-271.656	1/2:56:0,15,41:0:0:15,41:540,1466:-163.585,-119.523,-115.008,-44.4211,0,-32.0789	1/2:43:0,22,21:0:0:22,21:788,754:-126.129,-61.8652,-55.2426,-64.6221,0,-58.3005	1/2:89:0,46,43:0:0:46,43:1641,1537:-259.45,-125.678,-111.83,-134.129,0,-121.185	1/1:60:0,60,0:0:0:60,0:2152,0:-193.947,-18.0618,0,-193.947,-18.0618,-193.947	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7925,-9.0309,0,-96.7925,-9.0309,-96.7925	1/2:60:0,30,30:0:0:30,30:1076,1061:-174.535,-86.7688,-77.7379,-88.122,0,-79.0911	1/2:45:0,21,24:0:0:21,24:756,862:-132.353,-70.6669,-64.3453,-62.0456,0,-54.8209	1/2:32:0,14,18:0:0:14,18:482,637:-91.293,-52.2387,-48.0242,-39.4023,0,-33.9837	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6759,-8.42884,0,-90.6759,-8.42884,-90.6759	1/2:36:0,23,13:0:0:23,13:824,445:-103.674,-36.4625,-29.5388,-67.5596,0,-63.6462	1/1:95:0,95,0:0:0:95,0:3366,0:-303.151,-28.5979,0,-303.151,-28.5979,-303.151	1/1:131:0,131,0:0:0:131,0:4692,0:-422.437,-39.4349,0,-422.437,-39.4349,-422.437	1/2:62:0,16,46:0:0:16,46:576,1646:-181.58,-134.581,-129.764,-47.3585,0,-33.5111	1/2:82:0,48,34:0:0:48,34:1703,1214:-238.08,-99.3313,-84.8819,-139.105,0,-128.87	1/2:50:0,27,23:0:0:27,23:964,824:-146.151,-67.5598,-59.432,-78.949,0,-72.0253	1/1:88:0,87,0:0:0:87,0:3105,0:-279.431,-26.1896,0,-279.431,-26.1896,-279.431	1/2:219:0,90,129:0:0:90,129:3224,4592:-637.277,-374.614,-347.521,-263.02,0,-224.187	1/1:247:0,246,0:0:0:246,0:8789,0:-790.51,-74.0534,0,-790.51,-74.0534,-790.51	1/2:22:0,12,9:0:0:12,9:432,324:-61.7238,-26.4727,-22.8603,-35.2858,0,-32.5766	1/1:268:0,268,0:0:0:268,0:9562,0:-860.528,-80.676,0,-860.528,-80.676,-860.528	1/1:120:0,120,0:0:0:120,0:4300,0:-387.177,-36.1236,0,-387.177,-36.1236,-387.177	1/1:146:0,146,0:0:0:146,0:5228,0:-470.658,-43.9504,0,-470.658,-43.9504,-470.658	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:11:0,5,6:0:0:5,6:180,205:-31.6729,-16.9775,-15.4723,-15.0469,0,-13.2407	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:163:0,163,0:0:0:163,0:5852,0:-526.79,-49.0679,0,-526.79,-49.0679,-526.79	1/2:115:0,48,66:0:0:48,66:1720,2317:-328.945,-188.664,-174.214,-140.384,0,-120.516	1/2:53:0,22,30:0:0:22,30:784,1048:-149.253,-85.3433,-78.7206,-64.0066,0,-54.9757	.:.:.:.:.:.:.:.	1/2:159:0,78,81:0:0:78,81:2784,2888:-462.72,-235.756,-212.276,-227.321,0,-202.937	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/2:186:0,78,108:0:0:78,108:2784,3840:-540.205,-313.24,-289.76,-227.321,0,-194.81	1/2:53:0,21,32:0:0:21,32:750,1142:-154.603,-93.4559,-87.1343,-61.5039,0,-51.8709	1/1:48:0,48,0:0:0:48,0:1724,0:-155.445,-14.4494,0,-155.445,-14.4494,-155.445	1/1:95:0,94,1:0:0:94,1:3368,36:-302.973,-28.2968,0,-300.035,-24.9996,-299.734	1/1:137:0,137,0:0:0:137,0:4888,0:-440.071,-41.2411,0,-440.071,-41.2411,-440.071	1/1:168:0,168,0:0:0:168,0:5997,0:-539.679,-50.573,0,-539.679,-50.573,-539.679	1/1:100:0,99,1:0:0:99,1:3544,34:-318.829,-29.802,0,-316.071,-26.7041,-315.77	1/1:90:0,90,0:0:0:90,0:3211,0:-289.212,-27.0927,0,-289.212,-27.0927,-289.212	1/1:84:0,84,0:0:0:84,0:2996,0:-269.872,-25.2865,0,-269.872,-25.2865,-269.872	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:98:0,56,42:0:0:56,42:2012,1501:-286.878,-122.74,-105.882,-164.495,0,-151.852	1/2:65:0,35,30:0:0:35,30:1248,1065:-188.863,-87.1299,-76.5939,-102.089,0,-93.0579	.:.:.:.:.:.:.:.	1/2:186:0,113,73:0:0:113,73:4044,2578:-540.028,-210.291,-176.275,-330.091,0,-308.116	1/1:50:0,50,0:0:0:50,0:1800,0:-162.282,-15.0515,0,-162.282,-15.0515,-162.282	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:8:0,5,3:0:0:5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chr03	27567886	.	G	C	351273	PASS	AB=0.493136;ABP=5.63368;AC=136;AF=0.73913;AN=184;AO=12882;CIGAR=1X;DP=16147;DPB=16147;DPRA=0;EPP=27975.9;EPPR=7077.67;GTI=3;LEN=1;MEANALT=1.03261;MQM=59.4613;MQMR=59.7869;NS=92;NUMALT=1;ODDS=1.20353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=458046;QR=116587;RO=3262;RPL=5524;RPP=569.993;RPPR=170.766;RPR=7358;RUN=1;SAF=5524;SAP=569.993;SAR=7358;SRF=1379;SRP=172.106;SRR=1883;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:87:36,51:36:1288:51:1828:-138.551,0,-90.0258	0/1:193:67,126:67:2408:126:4504:-346.679,0,-158.861	0/1:183:82,101:82:2948:101:3624:-271.259,0,-210.448	1/1:539:1,537:1:36:537:19044:-1708.06,-158.716,0	0/1:13:6,7:6:216:7:233:-17.3809,0,-15.8771	0/1:43:18,25:18:639:25:883:-66.8432,0,-44.8858	0/1:143:78,65:78:2775:65:2286:-162.951,0,-206.357	1/1:313:0,313:0:0:313:11162:-1004.22,-94.2224,0	1/1:297:2,295:2:72:295:10510:-938.735,-82.5692,0	0/1:252:133,119:133:4749:119:4230:-304.806,0,-350.464	0/1:102:42,60:42:1496:60:2112:-159.189,0,-104.227	0/1:245:107,138:107:3820:138:4914:-368.607,0,-270.238	1/1:157:1,156:1:36:156:5547:-495.719,-43.6634,0	1/1:70:1,69:1:36:69:2438:-216.075,-17.4738,0	0/1:181:85,96:85:3048:96:3435:-253.507,0,-220.056	0/1:95:64,31:64:2288:31:1099:-70.6216,0,-177.465	0/1:75:37,38:37:1324:38:1356:-99.735,0,-96.8399	1/1:74:0,74:0:0:74:2631:-237.037,-22.2762,0	0/1:59:24,35:24:860:35:1252:-95.2243,0,-59.9611	1/1:426:0,426:0:0:426:15118:-1359.79,-128.239,0	1/1:161:0,161:0:0:161:5672:-510.603,-48.4658,0	0/1:72:38,34:38:1360:34:1196:-86.1817,0,-101.018	0/1:243:94,149:94:3352:149:5303:-403.594,0,-228.744	0/1:65:51,14:51:1828:14:496:-25.4073,0,-145.229	1/1:34:0,34:0:0:34:1203:-108.575,-10.235,0	0/1:541:271,270:271:9676:270:9626:-702.935,0,-707.929	1/1:190:1,189:1:36:189:6722:-601.429,-53.5974,0	0/1:64:40,24:40:1436:24:845:-57.1012,0,-110.272	1/1:667:0,667:0:0:667:23729:-2134.1,-200.787,0	1/1:90:0,90:0:0:90:3164:-284.974,-27.0927,0	1/1:213:0,213:0:0:213:7581:-682.203,-64.1194,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:9:7,2:7:252:2:68:-3.74844,0,-20.3197	0/1:5:3,2:3:104:2:68:-4.95256,0,-8.19766	1/1:18:0,18:0:0:18:627:-56.7544,-5.41854,0	1/1:16:0,16:0:0:16:572:-51.7957,-4.81648,0	1/1:476:0,476:0:0:476:16918:-1521.46,-143.29,0	0/1:112:75,37:75:2675:37:1315:-84.9357,0,-207.253	0/1:86:40,46:40:1424:46:1643:-122.233,0,-102.569	.:.:.:.:.:.:.:.	0/1:144:100,44:100:3559:44:1546:-96.082,0,-277.165	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	0/1:134:94,40:94:3359:40:1419:-87.6693,0,-262.159	0/1:181:90,91:90:3212:91:3263:-239.274,0,-234.724	1/1:179:0,178:0:0:178:6325:-568.49,-53.5833,0	1/1:243:0,243:0:0:243:8640:-776.878,-73.1503,0	1/1:182:0,182:0:0:182:6481:-583.272,-54.7875,0	1/1:339:0,339:0:0:339:12076:-1085.32,-102.049,0	1/1:210:0,210:0:0:210:7460:-671.045,-63.2163,0	1/1:332:0,331:0:0:331:11741:-1055.46,-99.6409,0	1/1:172:0,172:0:0:172:6091:-547.218,-51.7772,0	1/1:21:0,21:0:0:21:756:-68.3388,-6.32163,0	0/1:180:92,88:92:3304:88:3141:-228.411,0,-243.347	0/1:103:49,54:49:1743:54:1898:-139.966,0,-126.146	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:180:131,49:131:4695:49:1735:-102.248,0,-368.509	1/1:79:0,79:0:0:79:2828:-254.719,-23.7814,0	.:.:.:.:.:.:.:.	0/1:27:6,21:6:216:21:752:-59.85,0,-11.6627	0/1:75:55,20:55:1972:20:712:-41.8294,0,-155.167	0/1:192:86,106:86:3071:106:3763:-280.898,0,-218.818	0/1:6:1,5:1:36:5:172:-14.0118,0,-1.79209	1/1:522:1,521:1:36:521:18499:-1660.17,-153.539,0	0/1:304:128,176:128:4577:176:6289:-474.351,0,-320.573	1/1:80:0,80:0:0:80:2822:-254.217,-24.0824,0	1/1:142:0,142:0:0:142:4979:-448.059,-42.7463,0	1/1:474:0,474:0:0:474:16870:-1517.45,-142.688,0	0/1:372:135,237:135:4797:237:8419:-643.867,0,-319.895	1/1:31:1,30:1:36:30:1068:-92.7879,-5.73366,0	1/1:106:0,106:0:0:106:3799:-341.754,-31.9092,0	1/1:101:0,101:0:0:101:3620:-325.945,-30.404,0	0/1:25:12,13:12:432:13:468:-34.903,0,-31.6954	1/1:225:0,225:0:0:225:8028:-722.446,-67.7318,0	0/1:210:123,87:123:4412:87:3105:-216.338,0,-333.831	1/1:138:1,137:1:36:137:4826:-430.819,-37.9439,0	0/1:353:192,161:192:6865:161:5695:-405.793,0,-511.65	0/1:62:29,33:29:1040:33:1167:-86.6725,0,-75.2423	1/1:303:4,299:4:140:299:10605:-940.714,-78.2675,0	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:201:135,66:135:4819:66:2355:-151.145,0,-373.339	1/1:222:0,222:0:0:222:7934:-713.697,-66.8287,0	1/1:517:0,517:0:0:517:18403:-1654.43,-155.633,0	0/1:140:51,89:51:1824:89:3174:-243.712,0,-122.292	1/1:107:0,107:0:0:107:3827:-344.512,-32.2102,0	0/1:120:52,68:52:1851:68:2416:-181.537,0,-130.746	1/1:376:0,376:0:0:376:13385:-1203.35,-113.187,0	0/1:61:26,35:26:936:35:1235:-93.0906,0,-66.1966	0/1:157:72,85:72:2557:85:3014:-224.17,0,-183.093	1/1:198:0,198:0:0:198:7059:-634.633,-59.6039,0	0/1:32:20,12:20:712:12:428:-29.2258,0,-54.7691	0/1:89:54,35:54:1932:35:1240:-85.1128,0,-147.226	0/1:174:109,65:109:3912:65:2282:-153.232,0,-299.862	1/1:369:0,369:0:0:369:13173:-1184.78,-111.08,0	1/1:286:0,286:0:0:286:10221:-919.589,-86.0946,0
chr03	27567908	.	TT	CC,TC	265363	PASS	AB=0.487134,0.511283;ABP=10.2743,8.5963;AC=136,48;AF=0.73913,0.26087;AN=184;AO=9396,2596;CIGAR=2X,1M1X;DP=12021;DPB=12624;DPRA=0,0.740583;EPP=20397.5,5631.47;EPPR=5.18177;GTI=4;LEN=2,1;MEANALT=1.92391,2.19298;MQM=58.9371,59.7319;MQMR=60;NS=92;NUMALT=2;ODDS=0.75526;PAIRED=0,0;PAIREDR=0;PAO=1203,1.5;PQA=42172,54;PQR=54;PRO=1.5;QA=326966,91865;QR=36;RO=1;RPL=1,735;RPP=20397.5,1063.55;RPPR=5.18177;RPR=9395,1861;RUN=1,1;SAF=0,734;SAP=20406.2,1067.32;SAR=9396,1862;SRF=0;SRP=5.18177;SRR=1;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:63:0,37,26:0:0:37,26:1274,928:-179.404,-76.0033,-64.8652,-103.752,0,-95.9251	1/2:143:0,95,48:0:0:95,48:3295,1700:-406.221,-138.834,-110.236,-267.738,0,-253.289	1/2:139:0,76,63:0:0:76,63:2607,2193:-390.301,-178.657,-155.778,-211.99,0,-193.025	1/1:350:0,347,1:0:0:347,1:12174,36:-1092.34,-104.457,0,-1089.41,-101.519,-1089.11	1/2:13:0,11,2:0:0:11,2:383,72:-37.0156,-5.8761,-2.56477,-31.1399,0,-30.5378	1/2:20:0,14,6:0:0:14,6:486,203:-56.2928,-16.7867,-12.5723,-39.8468,0,-38.0406	1/2:109:0,34,75:0:0:34,75:1212,2656:-315.108,-216.33,-206.095,-98.786,0,-76.2088	1/1:213:0,213,0:0:0:213,0:7333,0:-659.036,-64.1194,0,-659.036,-64.1194,-659.036	1/1:159:0,157,2:0:0:157,2:5467,72:-491.404,-47.2617,0,-485.529,-41.027,-484.927	1/2:214:0,86,128:0:0:86,128:2992,4531:-612.059,-368.856,-342.968,-243.224,0,-204.692	1/2:73:0,32,40:0:0:32,40:1122,1405:-205.199,-114.344,-104.711,-90.8457,0,-78.8045	1/2:138:0,76,62:0:0:76,62:2654,2153:-391.204,-175.35,-152.472,-216.202,0,-197.538	1/1:90:0,89,1:0:0:89,1:3052,28:-274.606,-26.7917,0,-272.388,-24.293,-272.087	1/1:68:0,67,1:0:0:67,1:2273,21:-204.452,-20.169,0,-202.864,-18.5825,-202.563	1/2:128:0,46,82:0:0:46,82:1561,2924:-364.753,-238.345,-224.497,-126.395,0,-101.711	1/2:95:0,57,38:0:0:57,38:1947,1356:-268.178,-110.438,-93.279,-157.743,0,-146.304	1/2:39:0,21,18:0:0:21,18:725,615:-109.089,-50.2042,-43.8826,-59.2273,0,-53.8088	1/1:40:0,40,0:0:0:40,0:1377,0:-124.222,-12.0412,0,-124.222,-12.0412,-124.222	1/2:39:0,29,10:0:0:29,10:992,356:-109.86,-29.3709,-20.6411,-80.8411,0,-77.8308	1/1:360:0,359,0:0:0:359,0:12572,0:-1129.74,-108.07,0,-1129.74,-108.07,-1129.74	1/1:322:0,321,0:0:0:321,0:11141,0:-1000.56,-96.6306,0,-1000.56,-96.6306,-1000.56	1/2:60:0,25,35:0:0:25,35:867,1256:-173.19,-102.809,-95.2835,-70.7321,0,-60.1961	1/2:187:0,95,92:0:0:95,92:3320,3287:-537.908,-267.99,-239.392,-269.912,0,-242.217	1/2:91:0,57,34:0:0:57,34:1979,1198:-258.226,-97.5346,-80.3759,-160.687,0,-150.452	1/1:49:0,49,0:0:0:49,0:1707,0:-153.493,-14.7505,0,-153.493,-14.7505,-153.493	1/2:439:0,172,266:0:0:172,266:6025,9437:-1258.8,-768.87,-717.093,-489.933,0,-409.859	1/1:291:0,289,0:0:0:289,0:10087,0:-906.784,-86.9977,0,-906.784,-86.9977,-906.784	1/2:42:0,23,19:0:0:23,19:828,669:-121.92,-54.4628,-47.5391,-67.4586,0,-61.739	1/1:425:0,424,0:0:0:424,0:14803,0:-1330.95,-127.637,0,-1330.95,-127.637,-1330.95	1/1:130:0,130,0:0:0:130,0:4540,0:-407.624,-39.1339,0,-407.624,-39.1339,-407.624	1/1:128:0,128,0:0:0:128,0:4424,0:-397.783,-38.5318,0,-397.783,-38.5318,-397.783	1/1:5:0,5,0:0:0:5,0:176,0:-15.8358,-1.50515,0,-15.8358,-1.50515,-15.8358	1/2:10:0,5,5:0:0:5,5:180,180:-29.3818,-14.7203,-13.2152,-14.6915,0,-13.1863	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:5:0,5,0:0:0:5,0:178,0:-16.3597,-1.50515,0,-16.3597,-1.50515,-16.3597	1/1:11:0,11,0:0:0:11,0:357,0:-32.4245,-3.31133,0,-32.4245,-3.31133,-32.4245	1/1:242:0,241,0:0:0:241,0:8376,0:-753.057,-72.5482,0,-753.057,-72.5482,-753.057	1/2:114:0,70,44:0:0:70,44:2437,1567:-325.75,-127.703,-106.631,-198.046,0,-184.8	1/2:49:0,26,23:0:0:26,23:853,798:-134.093,-65.2129,-57.3861,-69.2183,0,-62.2946	.:.:.:.:.:.:.:.	1/2:131:0,87,44:0:0:87,44:3055,1580:-377.363,-128.892,-102.702,-248.474,0,-235.229	1/1:37:0,37,0:0:0:37,0:1311,0:-117.796,-11.1381,0,-117.796,-11.1381,-117.796	1/2:111:0,64,47:0:0:64,47:2236,1655:-316.492,-134.644,-115.378,-181.847,0,-167.699	1/2:141:0,50,91:0:0:50,91:1673,3205:-396.509,-261.134,-246.083,-135.715,0,-108.321	1/1:81:0,81,0:0:0:81,0:2782,0:-250.09,-24.3834,0,-250.09,-24.3834,-250.09	1/1:160:0,159,0:0:0:159,0:5573,0:-500.915,-47.8638,0,-500.915,-47.8638,-500.915	1/1:102:0,102,0:0:0:102,0:3594,0:-323.575,-30.7051,0,-323.575,-30.7051,-323.575	1/1:252:0,252,0:0:0:252,0:8812,0:-792.168,-75.8596,0,-792.168,-75.8596,-792.168	1/1:165:0,165,0:0:0:165,0:5774,0:-519.036,-49.67,0,-519.036,-49.67,-519.036	1/1:221:0,220,0:0:0:220,0:7698,0:-691.79,-66.2266,0,-691.79,-66.2266,-691.79	1/1:144:0,144,0:0:0:144,0:5074,0:-455.547,-43.3483,0,-455.547,-43.3483,-455.547	1/1:16:0,16,0:0:0:16,0:571,0:-51.6944,-4.81648,0,-51.6944,-4.81648,-51.6944	1/2:123:0,52,71:0:0:52,71:1830,2522:-354.425,-205.772,-190.119,-149.005,0,-127.632	1/2:76:0,26,50:0:0:26,50:871,1771:-214.715,-144.276,-136.45,-70.4395,0,-55.388	1/2:6:0,4,2:0:0:4,2:133,68:-16.5829,-5.85565,-4.65153,-11.0644,0,-10.4623	1/2:165:0,86,78:0:0:86,78:2970,2758:-465.89,-224.624,-198.735,-241.266,0,-217.785	1/1:53:0,52,0:0:0:52,0:1816,0:-163.379,-15.6536,0,-163.379,-15.6536,-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chr03	27567916	.	A	T	199847	PASS	AB=0.563141;ABP=151.636;AC=137;AF=0.744565;AN=184;AO=9244;CIGAR=1X;DP=11137;DPB=11137;DPRA=0;EPP=19816.4;EPPR=4003.32;GTI=6;LEN=1;MEANALT=1.05435;MQM=58.9231;MQMR=59.6105;NS=92;NUMALT=1;ODDS=1.67229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329327;QR=67338;RO=1882;RPL=30;RPP=19816.4;RPPR=4003.32;RPR=9214;RUN=1;SAF=0;SAP=20076.1;SAR=9244;SRF=0;SRP=4089.72;SRR=1882;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:26,34:26:936:34:1224:-92.321,0,-66.4895	0/1:143:46,97:46:1648:97:3480:-269.595,0,-105.545	0/1:139:64,75:64:2300:75:2688:-200.304,0,-165.389	1/1:350:1,349:1:36:349:12444:-1113.74,-101.762,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	0/1:20:6,14:6:216:14:500:-39.1245,0,-13.7616	0/1:85:49,36:49:1752:36:1288:-90.5792,0,-132.346	1/1:208:0,208:0:0:208:7430:-666.907,-62.6142,0	1/1:153:2,151:2:72:151:5366:-475.87,-39.2209,0	0/1:176:91,85:91:3268:85:3030:-219.727,0,-240.972	0/1:53:24,29:24:855:29:1040:-77.4727,0,-61.3132	0/1:135:58,77:58:2048:77:2752:-207.234,0,-143.942	1/1:91:1,90:1:36:90:3211:-285.081,-23.7955,0	1/1:68:1,67:1:36:67:2377:-210.531,-16.8718,0	0/1:86:38,48:38:1364:48:1724:-128.14,0,-97.1652	0/1:95:40,55:40:1431:55:1932:-144.52,0,-100.476	0/1:39:18,21:18:640:21:741:-55.2538,0,-46.1441	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	0/1:36:9,27:9:324:27:968:-76.5865,0,-18.6688	1/1:347:0,347:0:0:347:12257:-1101.75,-104.457,0	1/1:308:0,308:0:0:308:10935:-981.838,-92.7172,0	0/1:47:22,23:22:771:23:828:-60.8511,0,-55.8016	0/1:132:38,94:38:1364:94:3320:-257.867,0,-83.3201	0/1:92:35,57:35:1256:57:1999:-152.151,0,-85.6459	1/1:46:0,46:0:0:46:1650:-148.724,-13.8474,0	0/1:337:166,171:166:5913:171:6084:-445.867,0,-430.825	1/1:292:0,291:0:0:291:10385:-933.592,-87.5997,0	0/1:43:20,23:20:720:23:828:-61.7932,0,-52.1845	1/1:417:0,412:0:0:412:14634:-1315.59,-124.024,0	1/1:125:0,125:0:0:125:4456:-400.098,-37.6288,0	1/1:127:0,127:0:0:127:4537:-408.239,-38.2308,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:11:6,5:6:207:5:180:-13.2118,0,-15.6556	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:4:0,4:0:0:4:133:-12.2964,-1.20412,0	1/1:11:0,11:0:0:11:396:-35.965,-3.31133,0	1/1:236:0,236:0:0:236:8427:-757.609,-71.0431,0	0/1:113:45,68:45:1616:68:2410:-183.024,0,-111.695	0/1:47:23,24:23:819:24:860:-63.5244,0,-59.8832	.:.:.:.:.:.:.:.	0/1:131:46,85:46:1648:85:3030:-233.354,0,-109.164	1/1:35:0,35:0:0:35:1260:-113.561,-10.5361,0	0/1:114:51,63:51:1823:63:2244:-167.867,0,-129.975	0/1:89:40,47:40:1424:47:1684:-125.235,0,-101.691	1/1:81:0,81:0:0:81:2901:-261.176,-24.3834,0	1/1:159:0,159:0:0:159:5648:-507.728,-47.8638,0	1/1:100:0,100:0:0:100:3594:-323.214,-30.103,0	1/1:243:0,243:0:0:243:8609:-774.071,-73.1503,0	1/1:163:0,163:0:0:163:5807:-522.3,-49.0679,0	1/1:213:0,212:0:0:212:7546:-678.377,-63.8184,0	1/1:142:0,142:0:0:142:5064:-454.668,-42.7463,0	1/1:15:0,15:0:0:15:540:-48.908,-4.51545,0	0/1:119:73,46:73:2620:46:1625:-110.396,0,-200.179	0/1:46:21,25:21:752:25:873:-64.9118,0,-54.1547	0/1:5:2,3:2:68:3:108:-8.54065,0,-4.95256	0/1:165:80,85:80:2864:85:3029:-223.113,0,-208.044	1/1:52:0,52:0:0:52:1845:-166.271,-15.6536,0	.:.:.:.:.:.:.:.	0/1:24:4,20:4:140:20:716:-57.5145,0,-5.71986	0/1:86:28,58:28:1008:58:2068:-159.994,0,-65.1339	0/1:103:44,59:44:1580:59:2100:-158.148,0,-111.483	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:341:1,340:1:36:340:12110:-1085.65,-99.053,0	0/1:202:75,127:75:2671:127:4503:-344.128,0,-179.735	1/1:67:0,67:0:0:67:2372:-213.727,-20.169,0	1/1:104:0,104:0:0:104:3686:-331.017,-31.3071,0	1/1:345:0,345:0:0:345:12347:-1109.94,-103.855,0	0/1:270:62,208:62:2219:208:7449:-587.134,0,-118.674	1/1:28:1,27:1:36:27:968:-83.734,-4.83057,0	1/1:69:0,69:0:0:69:2476:-222.741,-20.7711,0	1/1:55:0,55:0:0:55:1976:-178.041,-16.5567,0	0/1:14:8,6:8:288:6:208:-14.8423,0,-22.053	1/1:134:0,134:0:0:134:4800:-431.905,-40.338,0	0/1:145:93,52:93:3328:52:1845:-122.605,0,-256.077	1/1:211:1,210:1:36:210:7495:-669.255,-59.9191,0	0/1:216:108,108:108:3880:108:3838:-279.825,0,-283.995	0/1:43:23,20:23:828:20:720:-52.1799,0,-61.8916	1/1:185:2,183:2:72:183:6515:-579.037,-48.8538,0	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:149:88,61:88:3160:61:2177:-150.625,0,-239.662	1/1:130:0,130:0:0:130:4607:-414.706,-39.1339,0	1/1:349:0,349:0:0:349:12453:-1119.42,-105.059,0	0/1:86:27,59:27:972:59:2109:-164.132,0,-61.9046	1/1:63:0,63:0:0:63:2268:-204.261,-18.9649,0	0/1:80:33,47:33:1184:47:1677:-127.054,0,-82.7836	1/1:227:0,227:0:0:227:8098:-727.229,-68.3338,0	0/1:35:16,19:16:572:19:680:-50.9931,0,-41.2774	0/1:92:35,57:35:1241:57:2036:-155.771,0,-84.2811	1/1:115:0,115:0:0:115:4125:-370.685,-34.6185,0	0/1:24:14,10:14:504:10:356:-25.1556,0,-38.4687	0/1:71:29,42:29:1032:42:1494:-112.003,0,-71.8139	0/1:79:42,37:42:1508:37:1310:-94.4038,0,-112.231	1/1:233:0,233:0:0:233:8224:-739.893,-70.14,0	1/1:145:0,145:0:0:145:5208:-468.258,-43.6494,0
chr03	27567937	.	ACTCCTG	GCTCCTG,GCTTCTA	240809	PASS	AB=0.551971,0.440424;ABP=104.803,136.776;AC=136,48;AF=0.73913,0.26087;AN=184;AO=9189,1919;CIGAR=1X6M,1X2M1X2M1X;DP=11193;DPB=11193.3;DPRA=0,0.672835;EPP=19956.7,4170.07;EPPR=13.8677;GTI=7;LEN=1,7;MEANALT=2.36957,2.68519;MQM=59.1084,59.4779;MQMR=60;NS=92;NUMALT=2;ODDS=1.74659;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=0;PRO=0;QA=328156,67311;QR=174;RO=5;RPL=9189,1919;RPP=19956.7,4170.07;RPPR=13.8677;RPR=0,0;RUN=1,1;SAF=0,0;SAP=19956.7,4170.07;SAR=9189,1919;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:61:0,35,26:0:0:35,26:1256,923:-177.936,-75.5531,-65.0171,-102.739,0,-94.912	1/2:141:0,90,49:0:0:90,49:3220,1701:-400.754,-138.256,-111.164,-262.491,0,-247.741	1/2:141:0,76,65:0:0:76,65:2720,2259:-405.757,-183.99,-161.112,-222.119,0,-202.552	1/1:342:0,338,1:0:0:338,1:12085,36:-1086.52,-101.748,0,-1083.58,-98.8011,-1083.28	1/2:13:0,11,2:0:0:11,2:396,72:-38.5463,-6.23466,-2.92333,-32.6714,0,-32.0694	1/2:19:0,13,6:0:0:13,6:468,207:-55.3562,-17.1595,-13.2461,-38.5463,0,-36.7401	1/2:81:0,33,48:0:0:33,48:1180,1693:-234.367,-138.177,-128.243,-96.5456,0,-82.0962	1/1:208:1,205,0:1:32:205,0:7283,0:-651.604,-59.1555,0,-651.906,-61.7112,-654.484	1/1:159:0,157,2:0:0:157,2:5600,72:-503.131,-47.2617,0,-497.256,-41.027,-496.654	1/2:181:0,86,91:0:0:86,91:3080,3179:-509.089,-258.12,-232.232,-250.978,0,-223.584	1/2:58:0,32,25:0:0:32,25:1114,875:-161.724,-71.2457,-61.6127,-90.5322,0,-83.0064	1/2:143:0,78,64:0:0:78,64:2786,2230:-408.439,-181.326,-157.846,-227.108,0,-207.842	1/1:91:0,91,0:0:0:91,0:3235,0:-291.047,-27.3937,0,-291.047,-27.3937,-291.047	1/1:68:0,67,1:0:0:67,1:2400,35:-215.85,-20.169,0,-213.002,-16.9714,-212.701	1/2:84:0,46,37:0:0:46,37:1648,1308:-240.727,-106.52,-92.6721,-134.203,0,-123.065	1/2:95:0,54,40:0:0:54,40:1914,1408:-269.946,-114.587,-98.3313,-155.39,0,-143.349	1/2:38:0,20,18:0:0:20,18:720,639:-111.109,-52.3756,-46.355,-59.0905,0,-53.672	1/1:39:0,39,0:0:0:39,0:1396,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/2:39:0,28,10:0:0:28,10:996,358:-110.382,-29.2119,-20.7831,-81.1865,0,-78.1762	1/1:348:0,348,0:0:0:348,0:12450,0:-1118.94,-104.758,0,-1118.94,-104.758,-1118.94	1/1:310:0,308,0:0:0:308,0:11005,0:-988.606,-92.7172,0,-988.606,-92.7172,-988.606	1/2:47:0,24,23:0:0:24,23:860,788:-134.394,-64.3054,-57.0807,-70.4387,0,-63.515	1/2:135:2,95,38:2:70:95,38:3382,1343:-378.151,-103.683,-80.7803,-269.379,0,-263.635	1/2:90:0,54,36:0:0:54,36:1924,1271:-260.511,-103.855,-87.5996,-157.01,0,-146.172	1/1:47:0,47,0:0:0:47,0:1688,0:-152.11,-14.1484,0,-152.11,-14.1484,-152.11	1/2:341:0,168,170:0:0:168,170:5985,5932:-969.825,-482.502,-431.929,-487.349,0,-436.174	1/1:292:0,291,0:0:0:291,0:10398,0:-934.309,-87.5997,0,-934.309,-87.5997,-934.309	1/2:42:0,21,20:0:0:21,20:756,709:-119.388,-57.7608,-51.4392,-61.6289,0,-55.6083	1/1:414:0,410,0:0:0:410,0:14672,0:-1319.18,-123.422,0,-1319.18,-123.422,-1319.18	1/1:125:0,120,0:0:0:120,0:4288,0:-385.663,-36.1236,0,-385.663,-36.1236,-385.663	1/1:126:0,125,0:0:0:125,0:4484,0:-403.199,-37.6288,0,-403.199,-37.6288,-403.199	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:11:0,5,6:0:0:5,6:180,211:-32.1897,-17.5275,-16.0223,-15.018,0,-13.2118	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:5:0,5,0:0:0:5,0:176,0:-16.1794,-1.50515,0,-16.1794,-1.50515,-16.1794	1/1:10:0,10,0:0:0:10,0:356,0:-32.3635,-3.0103,0,-32.3635,-3.0103,-32.3635	1/1:232:0,229,0:0:0:229,0:8189,0:-736.398,-68.9359,0,-736.398,-68.9359,-736.398	1/2:116:0,68,46:0:0:68,46:2432,1601:-328.416,-130.16,-109.69,-198.252,0,-184.405	1/2:49:0,26,23:0:0:26,23:923,822:-142.534,-67.3794,-59.5526,-75.5108,0,-68.5872	.:.:.:.:.:.:.:.	1/2:132:0,83,48:0:0:83,48:2980,1681:-379.724,-136.769,-111.783,-242.952,0,-228.502	1/1:37:0,35,0:0:0:35,0:1252,0:-112.512,-10.5361,0,-112.512,-10.5361,-112.512	1/2:115:0,64,51:0:0:64,51:2283,1778:-330.964,-144.907,-125.641,-186.409,0,-171.056	1/2:94:0,49,44:0:0:49,44:1758,1526:-267.009,-123.941,-109.191,-143.06,0,-129.815	1/1:81:0,80,0:0:0:80,0:2862,0:-257.145,-24.0824,0,-257.145,-24.0824,-257.145	1/1:161:0,161,0:0:0:161,0:5760,0:-518.018,-48.4658,0,-518.018,-48.4658,-518.018	1/1:101:0,100,0:0:0:100,0:3578,0:-321.522,-30.103,0,-321.522,-30.103,-321.522	1/1:243:0,242,0:0:0:242,0:8652,0:-777.685,-72.8493,0,-777.685,-72.8493,-777.685	1/1:164:0,164,0:0:0:164,0:5845,0:-525.746,-49.3689,0,-525.746,-49.3689,-525.746	1/1:219:0,217,0:0:0:217,0:7725,0:-694.381,-65.3235,0,-694.381,-65.3235,-694.381	1/1:146:1,144,0:1:36:144,0:5141,0:-458.776,-40.326,0,-459.077,-43.3483,-462.014	1/1:16:0,16,0:0:0:16,0:576,0:-52.1465,-4.81648,0,-52.1465,-4.81648,-52.1465	1/2:122:0,48,74:0:0:48,74:1720,2609:-352.726,-212.448,-197.998,-140.634,0,-118.358	1/2:47:0,24,23:0:0:24,23:852,798:-134.527,-65.2107,-57.986,-69.6671,0,-62.7434	1/2:5:0,3,2:0:0:3,2:108,71:-14.9552,-6.14,-5.23691,-9.17208,0,-8.57002	1/2:165:0,84,81:0:0:84,81:2991,2830:-474.258,-230.532,-205.245,-244.079,0,-219.696	1/1:53:0,52,0:0:0:52,0:1852,0:-166.58,-15.6536,0,-166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chr03	27599245	.	C	T	54915.2	PASS	AB=0.523708;ABP=32.663;AC=49;AF=0.260638;AN=188;AO=3194;CIGAR=1X;DP=13315;DPB=13315;DPRA=0.881979;EPP=6938.69;EPPR=21924.1;GTI=1;LEN=1;MEANALT=1.01754;MQM=59.8835;MQMR=59.9692;NS=94;NUMALT=1;ODDS=1.98886;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114467;QR=361259;RO=10119;RPL=0;RPP=6938.69;RPPR=21924.1;RPR=3194;RUN=1;SAF=3194;SAP=6938.69;SAR=0;SRF=10119;SRP=21976.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:19,20:19:684:20:716:-53.0252,0,-50.1502	0/1:276:133,143:133:4738:143:5129:-378.58,0,-343.493	0/1:249:119,130:119:4243:130:4647:-343.425,0,-307.094	0/0:291:290,1:290:10370:1:36:0,-84.0015,-929.624	0/1:162:69,93:69:2476:93:3340:-252.05,0,-174.327	0/1:86:57,29:57:2036:29:1019:-66.1327,0,-156.686	0/1:246:148,98:148:5287:98:3524:-243.314,0,-401.913	0/0:265:265,0:265:9384:0:0:0,-79.7729,-844.53	0/0:135:134,1:134:4804:1:36:0,-37.0408,-428.916	0/1:185:78,107:78:2785:107:3852:-291.181,0,-195.198	0/1:68:30,38:30:1080:38:1342:-100.597,0,-77.0432	0/1:89:39,50:39:1404:50:1800:-135.491,0,-99.8676	0/0:79:79,0:79:2811:0:0:0,-23.7814,-253.23	0/0:79:79,0:79:2823:0:0:0,-23.7814,-254.309	0/1:71:41,30:41:1468:30:1080:-76.1335,0,-111.043	0/1:61:33,28:33:1184:28:1004:-72.313,0,-88.5055	0/1:87:52,35:52:1872:35:1252:-86.7955,0,-142.565	0/0:67:67,0:67:2399:0:0:0,-20.169,-216.166	0/1:49:23,26:23:824:26:932:-69.4484,0,-59.7328	0/0:339:339,0:339:12153:0:0:0,-102.049,-1093.61	0/0:230:230,0:230:8195:0:0:0,-69.2369,-737.557	0/1:145:49,96:49:1722:96:3435:-265.566,0,-111.612	0/1:118:64,54:64:2273:54:1940:-139.35,0,-169.309	0/1:239:121,118:121:4329:118:4228:-308.751,0,-317.838	0/0:94:94,0:94:3371:0:0:0,-28.2968,-303.605	0/1:534:218,316:218:7785:316:11337:-859.323,0,-539.931	0/0:270:270,0:270:9643:0:0:0,-81.2781,-867.047	0/1:46:25,21:25:900:21:752:-54.1589,0,-67.4736	0/0:437:437,0:437:15617:0:0:0,-131.55,-1405.23	0/0:143:143,0:143:5128:0:0:0,-43.0473,-461.66	0/0:163:163,0:163:5832:0:0:0,-49.0679,-524.974	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:195:194,0:194:6940:0:0:0,-58.3998,-623.52	0/1:235:118,116:118:4194:116:4156:-303.568,0,-306.991	0/1:73:34,39:34:1220:39:1400:-104.322,0,-88.1316	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/1:298:178,120:178:6313:120:4296:-297.065,0,-478.561	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/1:270:130,140:130:4640:140:5016:-370.251,0,-336.486	0/1:85:33,52:33:1184:52:1867:-142.634,0,-81.2808	0/0:65:65,0:65:2314:0:0:0,-19.5669,-208.519	0/0:122:122,0:122:4360:0:0:0,-36.7257,-392.575	0/0:152:151,1:151:5400:1:36:0,-42.1583,-482.533	0/0:269:269,0:269:9603:0:0:0,-80.9771,-864.227	0/0:176:176,0:176:6312:0:0:0,-52.9813,-568.142	0/0:263:263,0:263:9424:0:0:0,-79.1709,-848.12	0/0:199:199,0:199:7121:0:0:0,-59.905,-640.946	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:198:100,98:100:3580:98:3488:-254.526,0,-262.803	0/1:35:18,17:18:644:17:612:-44.8774,0,-47.7545	0/1:23:9,14:9:320:14:504:-38.7744,0,-22.2187	0/1:258:119,139:119:4218:139:4989:-371.487,0,-302.138	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:11:6,5:6:201:5:180:-13.2407,0,-15.1057	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	0/1:147:63,84:63:2245:84:3012:-227.041,0,-158.06	0/1:96:47,49:47:1688:49:1755:-129.334,0,-123.308	0/1:12:6,6:6:216:6:216:-16.1777,0,-16.1782	0/0:254:254,0:254:9047:0:0:0,-76.4616,-814.079	0/0:268:262,6:262:9276:6:216:0,-60.8855,-814.651	0/0:125:125,0:125:4464:0:0:0,-37.6287,-401.931	0/0:184:184,0:184:6588:0:0:0,-55.3895,-592.984	0/0:250:249,1:249:8859:1:36:0,-71.6592,-793.702	0/1:150:51,99:51:1813:99:3538:-273.469,0,-118.295	0/0:19:18,1:18:644:1:36:0,-2.12129,-54.6923	0/0:126:126,0:126:4512:0:0:0,-37.9298,-406.248	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/1:26:9,17:9:324:17:612:-47.569,0,-21.6791	0/0:103:103,0:103:3661:0:0:0,-31.0061,-329.694	0/1:90:50,40:50:1779:40:1440:-102.805,0,-133.299	0/0:332:331,1:331:11796:1:36:0,-96.3437,-1057.87	0/1:296:131,165:131:4669:165:5914:-443.254,0,-331.267	0/1:176:80,96:80:2872:96:3440:-256.832,0,-205.735	0/0:172:172,0:172:6132:0:0:0,-51.7772,-551.981	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	0/1:221:110,111:110:3924:111:3973:-291.228,0,-286.827	0/0:190:190,0:190:6755:0:0:0,-57.1957,-608.029	0/0:354:354,0:354:12629:0:0:0,-106.565,-1136.43	0/1:129:65,64:65:2332:64:2300:-168.427,0,-171.307	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.854	0/1:107:47,60:47:1675:60:2138:-160.476,0,-118.826	0/0:149:148,1:148:5287:1:36:0,-41.2552,-472.368	0/1:43:20,23:20:720:23:824:-61.539,0,-52.1845	0/1:71:34,37:34:1224:37:1324:-98.089,0,-89.0939	0/0:73:73,0:73:2593:0:0:0,-21.9752,-233.618	0/1:47:19,28:19:676:28:1008:-76.8879,0,-47.0196	0/1:84:36,48:36:1287:48:1716:-129.436,0,-90.8463	0/1:64:24,40:24:856:40:1440:-110.631,0,-58.0952	0/0:175:175,0:175:6233:0:0:0,-52.6802,-561.066	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795
chr03	27599257	.	T	A	54579.9	PASS	AB=0.528402;ABP=45.0728;AC=49;AF=0.260638;AN=188;AO=3194;CIGAR=1X;DP=13122;DPB=13122;DPRA=1.00418;EPP=6921.33;EPPR=20650.3;GTI=1;LEN=1;MEANALT=1.03125;MQM=59.8626;MQMR=59.9771;NS=94;NUMALT=1;ODDS=0.106153;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113845;QR=354699;RO=9924;RPL=2;RPP=6921.33;RPPR=20650.3;RPR=3192;RUN=1;SAF=3194;SAP=6938.69;SAR=0;SRF=9924;SRP=21552.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:19,19:19:676:19:684:-50.4488,0,-49.7289	0/1:273:130,143:130:4587:143:5082:-375.255,0,-330.813	0/1:249:120,128:120:4296:128:4552:-334.831,0,-311.802	0/0:285:284,1:284:10100:1:36:0,-82.1953,-905.34	0/1:164:68,96:68:2440:96:3418:-258.464,0,-170.486	0/1:85:56,29:56:2003:29:1032:-67.6059,0,-154.955	0/1:240:141,99:141:5052:99:3533:-245.93,0,-382.578	0/0:263:263,0:263:9407:0:0:0,-79.1709,-846.591	0/0:134:133,1:133:4696:1:36:0,-36.7397,-419.204	0/1:186:79,107:79:2824:107:3815:-287.555,0,-198.405	0/1:67:29,38:29:1044:38:1364:-102.881,0,-74.1058	0/1:88:38,50:38:1360:50:1796:-135.432,0,-96.21	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.324	0/0:75:75,0:75:2653:0:0:0,-22.5772,-239.013	0/1:72:42,30:42:1512:30:1076:-75.4721,0,-114.7	0/1:61:33,28:33:1172:28:1008:-72.6735,0,-87.4247	0/1:85:49,36:49:1737:36:1296:-91.356,0,-131.02	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.778	0/1:48:22,26:22:780:26:917:-68.3952,0,-56.0736	0/0:336:336,0:336:12044:0:0:0,-101.146,-1083.8	0/0:232:232,0:232:8270:0:0:0,-69.839,-744.285	0/1:145:48,97:48:1720:97:3394:-262.006,0,-111.436	0/1:122:64,58:64:2292:58:2068:-149.649,0,-169.816	0/1:235:121,114:121:4316:114:4061:-294.934,0,-317.873	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.289	0/1:527:215,312:215:7700:312:11080:-838.406,0,-534.391	0/0:265:264,0:264:9441:0:0:0,-79.4719,-849.366	0/1:46:25,21:25:900:21:756:-54.5198,0,-67.4736	0/0:434:433,1:433:15497:1:36:0,-127.049,-1390.83	0/0:144:144,0:144:5129:0:0:0,-43.3483,-461.752	0/0:156:155,1:155:5524:1:21:0,-44.8612,-495.186	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:196:196,0:196:7008:0:0:0,-59.0019,-629.848	0/1:235:119,116:119:4260:116:4160:-303.838,0,-312.837	0/1:73:34,39:34:1216:39:1392:-103.601,0,-87.7714	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:291:172,119:172:6148:119:4260:-295.934,0,-465.821	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/1:265:128,137:128:4567:137:4878:-359.396,0,-331.423	0/1:83:32,51:32:1148:51:1832:-140.088,0,-78.6443	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:121:121,0:121:4320:0:0:0,-36.4246,-388.976	0/0:151:150,1:150:5372:1:36:0,-41.8573,-480.013	0/0:260:258,1:258:9209:1:30:0,-75.2421,-825.808	0/0:180:180,0:180:6451:0:0:0,-54.1854,-580.671	0/0:262:262,0:262:9361:0:0:0,-78.8699,-842.455	0/0:195:195,0:195:6968:0:0:0,-58.7008,-627.186	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:198:101,97:101:3601:97:3472:-253.088,0,-264.692	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/1:23:9,14:9:316:14:504:-38.7744,0,-21.8552	0/1:256:117,139:117:4179:139:4968:-370.194,0,-299.229	0/0:75:75,0:75:2654:0:0:0,-22.5772,-239.104	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	0/1:141:58,83:58:2080:83:2953:-223.555,0,-145.025	0/1:96:46,50:46:1648:50:1788:-132.303,0,-119.71	0/1:11:5,6:5:180:6:212:-16.1131,0,-13.2407	0/0:249:248,1:248:8858:1:25:0,-72.4734,-794.721	0/0:262:255,7:255:9116:7:241:0,-56.9538,-798.482	0/0:119:118,1:118:4223:1:28:0,-33.0228,-377.45	0/0:180:180,0:180:6437:0:0:0,-54.1854,-579.412	0/0:239:238,1:238:8497:1:36:0,-68.3479,-761.134	0/1:147:48,99:48:1716:99:3531:-273.737,0,-110.474	0/0:18:17,1:17:608:1:36:0,-1.82026,-51.4537	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/0:89:88,0:88:3132:0:0:0,-26.4906,-281.807	0/1:25:9,16:9:320:16:568:-43.9227,0,-21.6166	0/0:104:103,1:103:3672:1:29:0,-28.4075,-327.783	0/1:82:43,39:43:1536:39:1396:-101.255,0,-113.849	0/0:318:316,2:316:11296:2:59:0,-90.1283,-1010.91	0/1:296:131,165:131:4700:165:5895:-441.47,0,-334.054	0/1:172:77,95:77:2735:95:3373:-252.009,0,-194.616	0/0:174:174,0:174:6224:0:0:0,-52.3792,-560.252	0/1:21:9,12:9:324:12:428:-32.5372,0,-23.1842	0/1:219:106,113:106:3807:113:4028:-296.74,0,-276.9	0/0:188:188,0:188:6731:0:0:0,-56.5936,-605.864	0/0:350:350,0:350:12531:0:0:0,-105.36,-1127.5	0/1:128:63,65:63:2268:65:2332:-171.607,0,-165.85	0/0:88:88,0:88:3168:0:0:0,-26.4906,-285.339	0/1:110:50,60:50:1788:60:2140:-159.754,0,-128.089	0/0:147:146,1:146:5236:1:36:0,-40.6531,-467.778	0/1:43:20,23:20:716:23:828:-61.8998,0,-51.8234	0/1:70:32,38:32:1140:38:1364:-101.989,0,-81.8371	0/0:67:66,1:66:2368:1:26:0,-17.5692,-210.778	0/1:46:18,28:18:644:28:993:-75.8351,0,-44.4432	0/1:80:34,46:34:1216:46:1635:-123.35,0,-85.6642	0/1:62:22,40:22:792:40:1436:-110.873,0,-52.9418	0/0:171:171,0:171:6120:0:0:0,-51.4761,-550.898	0/0:104:104,0:104:3723:0:0:0,-31.3071,-335.271
chr03	27599260	.	G	T	225734	PASS	AB=0.47834;ABP=27.7506;AC=139;AF=0.739362;AN=188;AO=10176;CIGAR=1X;DP=13359;DPB=13359;DPRA=0;EPP=20271.9;EPPR=6660.87;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9642;MQMR=59.8834;NS=94;NUMALT=1;ODDS=2.63407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=364219;QR=113870;RO=3181;RPL=212;RPP=20296.9;RPPR=6686.48;RPR=9964;RUN=1;SAF=10173;SAP=22073.9;SAR=3;SRF=3178;SRP=6884.43;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:19,18:19:684:18:648:-47.5138,0,-50.7499	0/1:275:142,133:142:5080:133:4753:-345.115,0,-374.475	0/1:254:131,123:131:4701:123:4371:-317.102,0,-346.777	1/1:290:1,289:1:32:289:10335:-926.872,-84.0994,0	0/1:162:93,69:93:3336:69:2463:-173.157,0,-251.69	0/1:86:30,56:30:1063:56:2008:-155.105,0,-70.0922	0/1:244:97,147:97:3480:147:5245:-398.736,0,-239.941	1/1:269:0,269:0:0:269:9615:-865.302,-80.9771,0	1/1:135:0,135:0:0:135:4836:-435.393,-40.6391,0	0/1:185:103,82:103:3696:82:2921:-207.433,0,-277.148	0/1:66:36,30:36:1288:30:1076:-77.2849,0,-96.3446	0/1:88:50,38:50:1796:38:1359:-96.1192,0,-135.432	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	1/1:77:0,77:0:0:77:2772:-249.72,-23.1793,0	0/1:72:30,42:30:1076:42:1512:-114.7,0,-75.4721	0/1:60:26,34:26:936:34:1216:-91.6848,0,-66.4977	0/1:88:36,52:36:1273:52:1868:-141.907,0,-88.3799	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	0/1:50:27,23:27:959:23:814:-58.5292,0,-71.5739	1/1:340:0,340:0:0:340:12201:-1097.92,-102.35,0	1/1:233:0,233:0:0:233:8350:-751.495,-70.14,0	0/1:147:96,51:96:3421:51:1836:-121.269,0,-263.786	0/1:120:56,64:56:2012:64:2287:-169.967,0,-145.225	0/1:237:113,124:113:4035:124:4456:-329.864,0,-291.992	1/1:97:0,97:0:0:97:3467:-312.237,-29.1999,0	0/1:536:319,217:319:11380:217:7793:-540.043,0,-862.587	1/1:269:0,269:0:0:269:9613:-864.967,-80.9771,0	0/1:45:20,25:20:712:25:900:-67.7747,0,-50.8603	1/1:443:1,442:1:36:442:15832:-1420.97,-129.758,0	1/1:151:0,151:0:0:151:5374:-483.781,-45.4555,0	1/1:163:0,162:0:0:162:5777:-519.793,-48.7669,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:200:1,199:1:36:199:7116:-637.938,-57.6473,0	0/1:239:117,122:117:4204:122:4388:-323.145,0,-306.591	0/1:72:39,33:39:1387:33:1175:-84.3828,0,-103.452	0/1:13:10,3:10:360:3:93:-4.76334,0,-28.8309	0/1:298:121,177:121:4316:177:6342:-481.163,0,-298.863	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	0/1:270:138,132:138:4936:132:4719:-343.591,0,-363.064	0/1:85:52,33:52:1868:33:1184:-81.2808,0,-142.724	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:123:0,123:0:0:123:4395:-395.723,-37.0267,0	1/1:155:1,154:1:32:154:5500:-491.927,-43.4603,0	1/1:269:0,269:0:0:269:9636:-867.188,-80.9771,0	1/1:178:0,178:0:0:178:6375:-573.81,-53.5833,0	1/1:266:0,266:0:0:266:9552:-859.631,-80.074,0	1/1:205:0,205:0:0:205:7342:-660.827,-61.7112,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:201:100,101:100:3537:101:3628:-266.217,0,-258.031	0/1:35:16,19:16:568:19:684:-51.3543,0,-40.9158	0/1:23:14,9:14:500:9:324:-22.5822,0,-38.4125	0/1:256:136,120:136:4876:120:4303:-310.382,0,-361.927	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:29:11,18:11:383:18:632:-48.4769,0,-26.0734	0/1:144:82,62:82:2948:62:2227:-157.346,0,-222.205	0/1:97:50,47:50:1796:47:1684:-122.647,0,-132.722	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1777	1/1:253:0,253:0:0:253:9055:-814.893,-76.1606,0	1/1:270:6,264:6:216:264:9435:-829.169,-61.4876,0	1/1:122:0,122:0:0:122:4380:-394.372,-36.7257,0	1/1:186:0,186:0:0:186:6651:-598.657,-55.9916,0	1/1:254:1,253:1:36:253:9038:-809.8,-72.8633,0	0/1:149:98,51:98:3524:51:1832:-120.307,0,-272.512	1/1:20:1,19:1:36:19:680:-57.9309,-2.42233,0	1/1:126:0,126:0:0:126:4511:-406.157,-37.9298,0	1/1:95:0,95:0:0:95:3377:-304.146,-28.5979,0	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6316	1/1:103:0,103:0:0:103:3676:-331.036,-31.0061,0	0/1:89:40,49:40:1436:49:1760:-131.892,0,-102.746	1/1:330:1,328:1:36:328:11734:-1052.38,-95.7353,0	0/1:297:166,131:166:5945:131:4657:-329.876,0,-445.676	0/1:174:95,79:95:3407:79:2832:-202.739,0,-254.464	1/1:173:0,173:0:0:173:6206:-558.629,-52.0782,0	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/1:218:111,107:111:3992:107:3847:-280.8,0,-293.799	1/1:190:0,190:0:0:190:6741:-606.763,-57.1957,0	1/1:355:0,355:0:0:355:12684:-1141.37,-106.866,0	0/1:131:66,65:66:2372:65:2333:-170.794,0,-174.302	1/1:90:0,90:0:0:90:3236:-291.456,-27.0927,0	0/1:107:59,48:59:2124:48:1716:-122.515,0,-159.218	1/1:148:1,147:1:36:147:5276:-471.376,-40.9542,0	0/1:43:23,20:23:828:20:720:-52.1845,0,-61.8998	0/1:71:38,33:38:1355:33:1188:-85.8555,0,-100.877	1/1:71:0,71:0:0:71:2546:-229.39,-21.3731,0	0/1:46:27,19:27:968:19:680:-47.6818,0,-73.59	0/1:83:47,36:47:1684:36:1287:-91.1473,0,-126.856	0/1:64:40,24:40:1440:24:864:-58.8166,0,-110.631	1/1:177:0,177:0:0:177:6343:-570.958,-53.2823,0	1/1:110:0,110:0:0:110:3942:-354.971,-33.1133,0
chr03	27599295	.	C	T	128470	PASS	AB=0.527666;ABP=72.6996;AC=49;AF=0.260638;AN=188;AO=5557;CIGAR=1X;DP=22894;DPB=22894;DPRA=1.01231;EPP=11914;EPPR=37132.4;GTI=0;LEN=1;MEANALT=1.08475;MQM=59.9079;MQMR=59.9855;NS=94;NUMALT=1;ODDS=21.2686;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197892;QR=614028;RO=17322;RPL=3116;RPP=181.052;RPPR=660.407;RPR=2441;RUN=1;SAF=3098;SAP=162.567;SAR=2459;SRF=9750;SRP=597.675;SRR=7572;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:160:67,93:67:2400:93:3304:-249.305,0,-168.092	0/1:359:171,188:171:6020:188:6709:-495.755,0,-433.84	0/1:442:202,240:202:7197:240:8518:-633.427,0,-514.73	0/0:499:499,0:499:17668:0:0:0,-150.214,-1589.75	0/1:288:112,176:112:3978:176:6274:-478.059,0,-271.516	0/1:121:75,46:75:2674:46:1633:-110.834,0,-203.543	0/1:412:225,186:225:7933:186:6615:-471.332,0,-589.921	0/0:400:400,0:400:14209:0:0:0,-120.412,-1278.58	0/0:311:309,2:309:11044:2:63:0,-87.6372,-987.868	0/1:286:130,156:130:4609:156:5569:-415.207,0,-328.88	0/1:126:63,63:63:2229:63:2246:-164.468,0,-162.943	0/1:204:88,116:88:3143:116:4115:-309.122,0,-221.685	0/0:160:160,0:160:5707:0:0:0,-48.1648,-513.75	0/0:126:126,0:126:4489:0:0:0,-37.9298,-404.179	0/1:166:93,73:93:3304:73:2611:-185.265,0,-247.607	0/1:125:64,61:64:2254:61:2168:-157.758,0,-165.494	0/1:117:72,45:72:2575:45:1612:-110.15,0,-196.778	0/0:106:106,0:106:3773:0:0:0,-31.9092,-339.769	0/1:85:36,49:36:1273:49:1742:-131.475,0,-89.2834	0/0:534:532,0:532:18924:0:0:0,-160.148,-1702.37	0/0:506:505,0:505:17916:0:0:0,-152.02,-1611.7	0/1:283:94,189:94:3333:189:6719:-519.529,0,-214.997	0/1:274:133,141:133:4718:141:5018:-369.239,0,-342.298	0/1:368:201,167:201:7156:167:5961:-425.818,0,-533.318	0/0:196:196,0:196:6945:0:0:0,-59.0019,-625.118	0/1:763:314,449:314:11068:449:15980:-1208.15,0,-766.34	0/0:630:628,1:628:22395:1:36:0,-186.109,-2011.32	0/1:83:41,42:41:1447:42:1486:-109.048,0,-105.54	0/0:722:720,2:720:25569:2:72:0,-210.507,-2293.67	0/0:244:244,0:244:8646:0:0:0,-73.4513,-778.099	0/0:237:237,0:237:8341:0:0:0,-71.3441,-750.7	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:32:12,19:12:424:19:680:-51.9704,0,-28.9342	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:368:368,0:368:13077:0:0:0,-110.779,-1176.75	0/1:319:162,157:162:5704:157:5589:-407.102,0,-417.456	0/1:108:50,58:50:1762:58:2063:-153.427,0,-126.351	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:465:264,201:264:9302:201:7181:-506.277,0,-697.158	0/0:65:65,0:65:2279:0:0:0,-19.5669,-205.37	0/1:488:229,259:229:8112:259:9153:-676.781,0,-583.204	0/1:141:61,80:61:2162:80:2829:-212.4,0,-152.401	0/0:103:103,0:103:3602:0:0:0,-31.0061,-324.387	0/0:257:257,0:257:9102:0:0:0,-77.3647,-819.163	0/0:300:299,1:299:10531:1:36:0,-86.7107,-944.122	0/0:397:397,0:397:14062:0:0:0,-119.509,-1265.35	0/0:280:280,0:280:9947:0:0:0,-84.2884,-895.147	0/0:359:359,0:359:12724:0:0:0,-108.07,-1144.99	0/0:344:343,0:343:12168:0:0:0,-103.253,-1094.61	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:403:198,205:198:7042:205:7314:-536.997,0,-512.529	0/1:109:53,56:53:1873:56:2004:-147.81,0,-136.035	0/1:46:29,17:29:1023:17:608:-41.2046,0,-78.5344	0/1:412:195,217:195:6868:217:7720:-570.809,0,-494.172	0/0:174:173,0:173:6135:0:0:0,-52.0782,-551.892	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:43:26,17:26:910:17:608:-42.1077,0,-69.2698	0/1:262:126,136:126:4480:136:4839:-356.75,0,-324.503	0/1:185:88,97:88:3155:97:3420:-252.321,0,-228.483	0/1:20:10,10:10:351:10:356:-26.3605,0,-25.9061	0/0:344:344,0:344:12192:0:0:0,-103.554,-1097.06	0/0:471:458,11:458:16260:11:392:0,-105.922,-1426.79	0/0:192:192,0:192:6849:0:0:0,-57.7978,-616.481	0/0:271:271,0:271:9609:0:0:0,-81.5791,-864.77	0/0:389:388,1:388:13607:1:36:0,-113.502,-1220.84	0/1:323:113,210:113:4001:210:7508:-578.528,0,-263.049	0/0:61:59,2:59:2107:2:72:0,-11.5261,-183.062	0/0:223:223,0:223:7884:0:0:0,-67.1297,-709.595	0/0:129:129,0:129:4569:0:0:0,-38.8329,-411.376	0/1:56:27,29:27:964:29:1032:-76.3182,0,-70.2191	0/0:212:211,0:211:7469:0:0:0,-63.5173,-671.901	0/1:220:121,99:121:4309:99:3540:-252.583,0,-321.76	0/0:528:527,1:527:18691:1:36:0,-155.346,-1678.16	0/1:485:212,273:212:7534:273:9771:-733.261,0,-532.108	0/1:302:143,159:143:5067:159:5642:-416.992,0,-365.267	0/0:256:256,0:256:9025:0:0:0,-77.0637,-812.242	0/1:43:17,26:17:612:26:928:-70.894,0,-42.4691	0/1:382:188,194:188:6638:194:6941:-509.743,0,-482.511	0/0:296:295,0:295:10395:0:0:0,-88.8038,-935.125	0/0:603:602,0:602:21339:0:0:0,-181.22,-1919.53	0/1:188:90,98:90:3194:98:3489:-257.625,0,-231.088	0/0:139:139,0:139:4940:0:0:0,-41.8432,-444.751	0/1:168:75,93:75:2633:93:3315:-247.987,0,-186.642	0/0:273:270,3:270:9571:3:108:0,-72.106,-851.276	0/1:61:29,32:29:1040:32:1144:-84.9067,0,-75.5515	0/1:134:67,67:67:2388:67:2376:-173.761,0,-174.84	0/0:132:132,0:132:4673:0:0:0,-39.736,-420.732	0/1:86:41,45:41:1460:45:1612:-119.481,0,-105.807	0/1:153:74,79:74:2609:79:2811:-207.171,0,-188.998	0/1:140:47,93:47:1662:93:3316:-256.514,0,-107.722	0/0:268:265,2:265:9359:2:72:0,-73.8981,-835.448	0/0:226:225,0:225:801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chr03	27599303	.	C	G	43532.4	PASS	AB=0.537116;ABP=59.1054;AC=48;AF=0.255319;AN=188;AO=2528;CIGAR=1X;DP=10195;DPB=10195;DPRA=0.994519;EPP=5492.49;EPPR=16554.1;GTI=0;LEN=1;MEANALT=1.11111;MQM=59.911;MQMR=59.997;NS=94;NUMALT=1;ODDS=3.04296;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90332;QR=273309;RO=7658;RPL=2528;RPP=5492.49;RPPR=16554.1;RPR=0;RUN=1;SAF=0;SAP=5492.49;SAR=2528;SRF=0;SRP=16632.1;SRR=7658;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:127:47,80:47:1692:80:2831:-216.791,0,-114.336	0/1:99:49,50:49:1733:50:1792:-131.761,0,-126.451	0/1:202:85,117:85:3052:117:4176:-315.097,0,-214.101	0/0:219:219,0:219:7808:0:0:0,-65.9256,-702.746	0/1:129:48,81:48:1701:81:2908:-223.122,0,-114.541	0/1:35:19,16:19:669:16:576:-41.6389,0,-49.9979	0/1:172:80,91:80:2849:91:3263:-242.035,0,-204.811	0/0:147:147,0:147:5263:0:0:0,-44.2514,-473.806	0/0:192:192,0:192:6876:0:0:0,-57.7978,-618.908	0/1:112:52,59:52:1864:59:2095:-155.014,0,-134.265	0/1:63:36,27:36:1288:27:972:-68.8318,0,-97.2587	0/1:124:51,73:51:1809:73:2612:-197.999,0,-125.762	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.684	0/1:95:51,44:51:1832:44:1576:-113.533,0,-136.563	0/1:66:31,35:31:1116:35:1252:-93.1171,0,-80.8837	0/1:34:22,12:22:792:12:432:-28.9862,0,-61.3707	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:44:19,25:19:684:25:900:-68.0757,0,-48.645	0/0:205:204,0:204:7297:0:0:0,-61.4101,-656.42	0/0:301:301,0:301:10626:0:0:0,-90.61,-956.252	0/1:143:44,97:44:1584:97:3458:-268.619,0,-100.046	0/1:159:72,87:72:2546:87:3120:-233.116,0,-181.525	0/1:144:83,60:83:2972:60:2150:-150.507,0,-224.454	0/0:106:106,0:106:3816:0:0:0,-31.9092,-343.635	0/1:251:103,148:103:3670:148:5311:-402.556,0,-254.943	0/0:375:373,1:373:13312:1:36:0,-109.347,-1194.28	0/1:41:17,24:17:612:24:864:-65.7403,0,-43.0712	0/0:300:299,1:299:10693:1:36:0,-86.7107,-958.677	0/0:101:101,0:101:3605:0:0:0,-30.404,-324.61	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:23:8,15:8:288:15:536:-41.6511,0,-19.3437	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3333	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:179:179,0:179:6420:0:0:0,-53.8844,-577.886	0/1:94:43,50:43:1540:50:1788:-132.994,0,-110.684	0/1:40:19,21:19:669:21:756:-56.326,0,-48.4927	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:175:90,85:90:3205:85:3037:-220.834,0,-235.992	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:231:105,126:105:3718:126:4477:-333.541,0,-265.283	0/1:63:30,33:30:1072:33:1184:-87.903,0,-77.8276	0/0:44:44,0:44:1557:0:0:0,-13.2453,-140.42	0/0:144:144,0:144:5112:0:0:0,-43.3483,-460.22	0/0:147:147,0:147:5230:0:0:0,-44.2514,-470.838	0/0:148:148,0:148:5255:0:0:0,-44.5524,-473.086	0/0:103:103,0:103:3659:0:0:0,-31.0061,-329.511	0/0:101:101,0:101:3574:0:0:0,-30.404,-321.867	0/0:153:153,0:153:5458:0:0:0,-46.0576,-491.343	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:215:102,113:102:3645:113:4026:-297.808,0,-263.532	0/1:79:35,44:35:1260:44:1580:-118.704,0,-89.9241	0/1:22:18,4:18:648:4:144:-6.69096,0,-52.0292	0/1:159:78,81:78:2804:81:2896:-213.013,0,-204.735	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:123:65,58:65:2313:58:2058:-148.464,0,-171.402	0/1:92:42,50:42:1512:50:1792:-133.867,0,-108.68	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:105:105,0:105:3753:0:0:0,-31.6081,-337.969	0/0:207:202,5:202:7175:5:180:0,-45.7611,-629.253	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:96:96,0:96:3413:0:0:0,-28.8989,-307.382	0/0:150:150,0:150:5348:0:0:0,-45.1545,-481.453	0/1:184:65,119:65:2328:119:4250:-327.287,0,-154.39	0/0:43:42,1:42:1512:1:32:0,-9.74498,-133.175	0/0:100:100,0:100:3538:0:0:0,-30.103,-318.626	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:32:19,13:19:663:13:468:-32.8267,0,-50.3605	0/0:117:116,0:116:4089:0:0:0,-34.9195,-367.833	0/1:139:76,63:76:2712:63:2238:-159.84,0,-202.478	0/0:214:214,0:214:7668:0:0:0,-64.4204,-690.154	0/1:198:88,110:88:3153:110:3940:-295.186,0,-224.389	0/1:145:73,72:73:2613:72:2549:-186.011,0,-191.767	0/0:92:92,0:92:3277:0:0:0,-27.6948,-295.149	0/1:20:7,13:7:252:13:460:-35.7148,0,-17.0084	0/1:166:84,82:84:2971:82:2940:-214.863,0,-217.649	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/0:249:249,0:249:8908:0:0:0,-74.9565,-801.701	0/1:60:24,36:24:864:36:1288:-98.1612,0,-60.0208	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:65:30,35:30:1076:35:1230:-91.4269,0,-77.5859	0/0:127:126,1:126:4524:1:36:0,-34.6325,-403.728	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/1:67:35,32:35:1256:32:1152:-83.8211,0,-93.1763	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:42:22,20:22:792:20:712:-51.7634,0,-58.9624	0/1:76:40,36:40:1428:36:1279:-92.5342,0,-105.939	0/1:80:26,54:26:928:54:1936:-150.433,0,-59.7559	0/0:103:102,1:102:3626:1:36:0,-27.4078,-322.945	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653
chr03	27651856	.	G	C	18407.2	PASS	AB=0.526903;ABP=15.9791;AC=47;AF=0.252688;AN=186;AO=1090;CIGAR=1X;DP=4813;DPB=4813;DPRA=0.788298;EPP=2369.92;EPPR=8085.23;GTI=0;LEN=1;MEANALT=1.02041;MQM=59.9826;MQMR=59.9764;NS=93;NUMALT=1;ODDS=3.7849;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39021;QR=133275;RO=3722;RPL=0;RPP=2369.92;RPPR=8085.23;RPR=1090;RUN=1;SAF=1090;SAP=2369.92;SAR=0;SRF=3722;SRP=8085.23;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:21,25:21:756:25:892:-66.7517,0,-54.5198	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:136:51,85:51:1820:85:3012:-230.371,0,-123.141	0/0:156:156,0:156:5596:0:0:0,-46.9607,-503.761	0/1:44:29,15:29:1044:15:530:-34.786,0,-81.0295	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:64:64,0:64:2254:0:0:0,-19.2659,-202.863	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:48:18,30:18:648:30:1078:-82.8837,0,-44.2024	0/1:22:16,6:16:576:6:216:-13.1679,0,-45.5523	0/1:72:35,37:35:1260:37:1328:-98.1481,0,-92.0313	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:43:28,15:28:1008:15:527:-34.8159,0,-78.0921	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:26:11,15:11:392:15:540:-41.1098,0,-27.7933	0/0:88:88,0:88:3168:0:0:0,-26.4906,-285.343	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/1:59:32,27:32:1152:27:972:-70.0371,0,-86.2294	0/1:36:22,14:22:788:14:500:-34.4991,0,-60.4077	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:147:81,66:81:2901:66:2365:-168.851,0,-217.072	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.03	0/1:27:14,13:14:480:13:468:-34.3318,0,-35.396	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.234	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:48:48,0:48:1698:0:0:0,-14.4494,-153.102	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:132:132,0:132:4737:0:0:0,-39.736,-426.485	0/1:45:15,30:15:540:30:1076:-83.6047,0,-35.3902	0/1:22:8,14:8:288:14:495:-38.2604,0,-19.6447	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:79:27,52:27:972:52:1872:-144.978,0,-64.0165	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:120:56,64:56:2012:64:2296:-170.777,0,-145.23	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	0/0:31:31,0:31:1088:0:0:0,-9.33193,-98.2292	0/0:107:107,0:107:3852:0:0:0,-32.2102,-346.874	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.952	0/0:146:146,0:146:5209:0:0:0,-43.9504,-468.949	0/0:87:87,0:87:3105:0:0:0,-26.1896,-279.676	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.167	0/0:103:103,0:103:3681:0:0:0,-31.0061,-331.492	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:27:18,9:18:644:9:318:-20.8326,0,-50.1628	0/1:22:14,8:14:504:8:284:-19.2807,0,-39.0754	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:98:49,49:49:1734:49:1763:-129.453,0,-126.84	0/1:43:25,18:25:888:18:644:-45.3463,0,-67.2947	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:31:16,15:16:561:15:536:-39.2429,0,-41.4852	0/1:64:27,37:27:964:37:1323:-100.105,0,-67.8109	.:.:.:.:.:.:.:.	0/0:105:105,0:105:3757:0:0:0,-31.6081,-338.328	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/0:74:71,2:71:2552:2:72:0,-15.4983,-223.093	0/1:39:19,20:19:680:20:720:-53.3886,0,-49.789	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:24:8,16:8:288:16:568:-44.2271,0,-19.0427	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/1:72:28,44:28:1000:44:1571:-120.007,0,-68.6412	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:101:44,57:44:1561:57:2044:-153.828,0,-110.376	0/1:65:28,37:28:989:37:1324:-99.8951,0,-69.7551	0/0:50:50,0:50:1778:0:0:0,-15.0515,-160.301	0/1:9:4,5:4:144:5:167:-12.6491,0,-10.6043	0/1:90:41,49:41:1476:49:1756:-131.231,0,-106.043	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:162:162,0:162:5813:0:0:0,-48.7669,-523.28	0/1:38:22,16:22:788:16:576:-40.7358,0,-59.8047	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:23:15,8:15:540:8:288:-19.3437,0,-42.0128	0/0:113:112,1:112:4024:1:36:0,-30.4181,-358.749	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:35:21,14:21:756:14:500:-34.8001,0,-57.8312	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:52:21,31:21:756:31:1116:-85.0981,0,-52.7137	0/1:73:20,53:20:720:53:1900:-149.303,0,-43.1536	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474
chr03	27651865	.	G	A	72340.2	PASS	AB=0.461268;ABP=28.915;AC=139;AF=0.747312;AN=186;AO=3486;CIGAR=1X;DP=4563;DPB=4563;DPRA=0;EPP=7486.15;EPPR=2337.34;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.9839;MQMR=59.9823;NS=93;NUMALT=1;ODDS=4.16179;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122014;QR=38456;RO=1075;RPL=10;RPP=7486.15;RPPR=2337.34;RPR=3476;RUN=1;SAF=3486;SAP=7572.76;SAR=0;SRF=1075;SRP=2337.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:25,20:25:896:20:701:-49.8654,0,-67.414	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/1:129:80,48:80:2860:48:1672:-111.87,0,-218.746	1/1:153:0,153:0:0:153:5332:-480.017,-46.0576,0	0/1:44:15,29:15:540:29:1021:-78.9549,0,-35.6912	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/1:20:9,11:9:315:11:396:-29.9621,0,-22.6666	1/1:61:0,60:0:0:60:2056:-185.089,-18.0618,0	1/1:64:0,64:0:0:64:2250:-202.761,-19.2659,0	0/1:47:29,18:29:1044:18:632:-43.0564,0,-80.1264	0/1:21:6,15:6:216:15:513:-40.1712,0,-13.4689	0/1:72:37,35:37:1332:35:1250:-91.1309,0,-98.5082	1/1:52:0,52:0:0:52:1785:-160.924,-15.6536,0	1/1:39:0,39:0:0:39:1388:-125.219,-11.7402,0	0/1:42:15,27:15:540:27:960:-74.073,0,-36.2933	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:16:12,4:12:432:4:140:-8.1281,0,-34.4047	1/1:13:1,12:1:36:12:428:-35.2605,-0.315115,0	0/1:20:15,5:15:536:5:172:-9.79737,0,-42.5542	1/1:87:0,87:0:0:87:3037:-273.556,-26.1896,0	1/1:52:0,52:0:0:52:1842:-166.056,-15.6536,0	1/1:96:0,96:0:0:96:3395:-305.763,-28.8989,0	0/1:54:27,27:27:972:27:953:-69.8277,0,-71.5423	0/1:36:14,22:14:504:22:788:-60.4077,0,-34.861	1/1:28:0,28:0:0:28:985:-88.9615,-8.42884,0	0/1:141:66,75:66:2363:75:2639:-195.308,0,-170.454	1/1:110:0,110:0:0:110:3883:-349.664,-33.1133,0	0/1:27:14,13:14:504:13:460:-33.6076,0,-37.5703	1/1:123:0,123:0:0:123:4263:-383.848,-37.0267,0	1/1:28:0,28:0:0:28:957:-86.4342,-8.42884,0	1/1:46:0,46:0:0:46:1629:-146.898,-13.8474,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:4:0,4:0:0:4:125:-11.5586,-1.20412,0	1/1:124:0,124:0:0:124:4391:-395.366,-37.3277,0	0/1:43:30,13:30:1049:13:445:-27.4311,0,-81.772	0/1:22:14,8:14:504:8:280:-18.9166,0,-39.0754	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:74:52,22:52:1857:22:769:-47.2524,0,-145.131	1/1:20:0,20:0:0:20:693:-62.6896,-6.0206,0	0/1:119:64,55:64:2285:55:1923:-137.519,0,-170.087	0/1:34:16,18:16:572:18:644:-48.0556,0,-41.5784	1/1:20:0,20:0:0:20:655:-59.2555,-6.0206,0	1/1:95:0,95:0:0:95:3324:-299.375,-28.5979,0	1/1:44:0,44:0:0:44:1553:-140.06,-13.2453,0	1/1:134:0,134:0:0:134:4615:-415.513,-40.338,0	1/1:79:0,79:0:0:79:2723:-245.306,-23.7814,0	1/1:41:0,41:0:0:41:1401:-126.375,-12.3422,0	1/1:99:0,99:0:0:99:3440:-309.81,-29.802,0	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	0/1:26:9,17:9:320:17:589:-45.5065,0,-21.3156	0/1:20:7,13:7:252:13:460:-35.7148,0,-17.0084	0/1:9:4,5:4:144:5:161:-12.0973,0,-10.6043	0/1:96:49,47:49:1764:47:1628:-117.901,0,-130.145	0/1:41:18,23:18:648:23:824:-62.1411,0,-46.3097	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:30:15,15:15:540:15:521:-38.1854,0,-39.9056	0/1:63:37,26:37:1316:26:932:-65.234,0,-99.7769	.:.:.:.:.:.:.:.	1/1:101:0,101:0:0:101:3525:-316.522,-30.404,0	1/1:66:0,66:0:0:66:2305:-207.708,-19.868,0	1/1:20:0,20:0:0:20:705:-63.7728,-6.0206,0	1/1:44:0,44:0:0:44:1497:-135.012,-13.2453,0	1/1:66:2,64:2:72:64:2193:-190.792,-13.0313,0	0/1:39:20,19:20:720:19:673:-49.1566,0,-53.3886	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:35:1,34:1:36:34:1182:-103.082,-6.93778,0	0/1:23:16,7:16:568:7:252:-16.1053,0,-44.5282	1/1:93:0,93:0:0:93:3325:-299.466,-27.9958,0	0/1:65:42,23:42:1491:23:810:-53.6537,0,-114.917	1/1:54:0,54:0:0:54:1920:-173.074,-16.2556,0	0/1:99:56,43:56:2004:43:1532:-108.371,0,-150.832	0/1:66:37,29:37:1324:29:1006:-70.9786,0,-99.5941	1/1:49:0,49:0:0:49:1733:-156.253,-14.7505,0	0/1:9:5,4:5:176:4:129:-9.21839,0,-13.4757	0/1:83:48,35:48:1715:35:1240:-86.9186,0,-129.649	1/1:41:0,41:0:0:41:1441:-129.984,-12.3422,0	1/1:150:0,150:0:0:150:5178:-466.164,-45.1545,0	0/1:35:15,20:15:527:20:705:-53.2367,0,-37.2241	1/1:22:0,22:0:0:22:761:-68.8068,-6.62266,0	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	1/1:106:1,105:1:36:105:3717:-331.133,-28.3109,0	0/1:11:4,7:4:144:7:237:-18.3477,0,-10.0023	0/1:34:14,20:14:504:20:720:-54.8938,0,-35.4631	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:15:7,8:7:248:8:280:-21.0239,0,-18.1487	0/1:53:31,22:31:1107:22:757:-52.4914,0,-83.9856	0/1:68:51,17:51:1827:17:600:-33.8592,0,-144.24	1/1:18:0,18:0:0:18:625:-56.5725,-5.41854,0	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0
chr03	27654338	.	A	C	20097.4	PASS	AB=0.493291;ABP=4.00092;AC=47;AF=0.252688;AN=186;AO=1257;CIGAR=1X;DP=5988;DPB=5988;DPRA=0.766698;EPP=2723.87;EPPR=10271.9;GTI=3;LEN=1;MEANALT=1.03922;MQM=59.9857;MQMR=59.986;NS=93;NUMALT=1;ODDS=2.39995;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44286;QR=169240;RO=4729;RPL=1257;RPP=2732.55;RPPR=10271.9;RPR=0;RUN=1;SAF=1256;SAP=2723.87;SAR=1;SRF=4729;SRP=10271.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:13,18:13:468:18:624:-47.1501,0,-33.1277	0/1:37:20,17:20:720:17:608:-43.9139,0,-53.9907	0/1:51:17,34:17:612:34:1192:-92.2298,0,-40.0609	0/0:139:139,0:139:4964:0:0:0,-41.8432,-446.91	0/1:46:24,22:24:851:22:775:-56.2238,0,-63.0621	0/1:36:24,12:24:864:12:432:-28.3841,0,-67.2455	0/1:76:47,29:47:1679:29:1040:-71.0361,0,-128.518	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.438	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:55:35,20:35:1252:20:705:-47.217,0,-96.4284	0/1:29:16,13:16:572:13:444:-31.5542,0,-43.0836	0/1:64:33,31:33:1188:31:1084:-78.6002,0,-87.9627	0/0:69:68,1:68:2440:1:36:0,-17.1728,-216.257	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.339	0/1:67:32,35:32:1148:35:1251:-92.7253,0,-83.4608	0/1:36:19,17:19:676:17:595:-43.0396,0,-50.3309	0/1:38:20,18:20:716:18:625:-45.1338,0,-53.3286	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/0:94:94,0:94:3359:0:0:0,-28.2968,-302.526	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/0:117:117,0:117:4176:0:0:0,-35.2205,-376.021	0/1:85:52,33:52:1864:33:1161:-79.2072,0,-142.452	0/1:36:28,8:28:1000:8:282:-14.884,0,-79.4783	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/1:175:93,82:93:3344:82:2869:-205.764,0,-248.496	0/0:154:154,0:154:5475:0:0:0,-46.3586,-492.879	0/1:25:12,13:12:424:13:468:-34.9339,0,-30.9707	0/0:163:163,0:163:5847:0:0:0,-49.0679,-526.34	0/0:89:89,0:89:3169:0:0:0,-26.7917,-285.434	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:143:143,0:143:5090:0:0:0,-43.0473,-458.245	0/1:89:53,36:53:1904:36:1263:-87.1773,0,-144.846	0/1:35:15,20:15:536:20:720:-54.5927,0,-38.0388	.:.:.:.:.:.:.:.	0/1:66:30,36:30:1072:36:1288:-96.3556,0,-76.9245	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:137:57,79:57:2052:79:2762:-207.517,0,-143.651	0/1:31:13,18:13:464:18:628:-47.5135,0,-32.7656	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.711	0/0:149:149,0:149:5296:0:0:0,-44.8535,-476.777	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.617	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:115:63,52:63:2260:52:1810:-128.559,0,-169.044	0/1:47:24,23:24:864:23:820:-59.9741,0,-63.9342	0/1:9:3,6:3:108:6:203:-15.8919,0,-7.3659	0/1:104:58,46:58:2076:46:1629:-115.59,0,-155.803	0/1:51:26,24:26:923:24:856:-61.9499,0,-67.9756	0/1:6:5,1:5:180:1:32:-1.39313,0,-14.7459	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:44:20,24:20:711:24:834:-62.1278,0,-51.0703	0/1:78:33,45:33:1184:45:1574:-118.466,0,-83.388	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	0/0:165:165,0:165:5920:0:0:0,-49.6699,-532.821	0/0:97:95,2:95:3416:2:72:0,-22.3632,-300.816	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.1	0/0:83:80,3:80:2867:3:108:0,-14.9103,-248.191	0/1:120:50,70:50:1792:70:2444:-184.089,0,-125.439	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:113:113,0:113:4036:0:0:0,-34.0164,-363.429	0/1:70:32,38:32:1148:38:1332:-99.1049,0,-82.5577	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:117:64,53:64:2300:53:1904:-136.417,0,-172.032	0/1:76:36,40:36:1275:40:1432:-106.299,0,-92.174	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.006	0/1:13:9,4:9:324:4:131:-8.20008,0,-25.5925	0/1:78:35,43:35:1256:43:1514:-113.071,0,-89.8649	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.593	0/0:146:146,0:146:5232:0:0:0,-43.9504,-471.017	0/1:51:27,24:27:960:24:834:-60.0174,0,-71.3637	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.664	0/1:46:27,19:27:964:19:666:-46.4162,0,-73.2294	0/0:104:103,1:103:3692:1:36:0,-27.7088,-328.828	0/1:25:10,15:10:360:15:536:-41.0491,0,-25.2186	0/1:45:26,19:26:936:19:665:-46.6264,0,-71.0131	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:24:6,18:6:216:18:640:-50.7046,0,-12.5658	0/1:79:29,50:29:1044:50:1755:-134.449,0,-70.4934	0/1:38:17,21:17:603:21:747:-56.1152,0,-43.1604	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.253
chr03	27654343	.	G	A	99422	PASS	AB=0.506587;ABP=3.95431;AC=139;AF=0.747312;AN=186;AO=4676;CIGAR=1X;DP=5923;DPB=5923;DPRA=0;EPP=10156.8;EPPR=2695.64;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.9782;MQMR=60;NS=93;NUMALT=1;ODDS=2.40353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166688;QR=43764;RO=1244;RPL=4676;RPP=10156.8;RPPR=2704.32;RPR=0;RUN=1;SAF=4676;SAP=10156.8;SAR=0;SRF=1243;SRP=2695.64;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:19,12:19:667:12:428:-29.5269,0,-51.0227	0/1:36:15,21:15:523:21:748:-56.8082,0,-36.5614	0/1:52:35,17:35:1224:17:608:-39.3985,0,-94.8073	1/1:132:0,132:0:0:132:4724:-425.319,-39.736,0	0/1:45:22,23:22:772:23:813:-59.9436,0,-56.2549	0/1:35:12,23:12:428:23:820:-63.5865,0,-28.3228	0/1:76:29,47:29:1031:47:1677:-128.337,0,-70.2243	1/1:99:0,99:0:0:99:3507:-315.84,-29.802,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:53:18,35:18:640:35:1260:-97.7509,0,-41.9747	0/1:29:13,16:13:464:16:568:-42.722,0,-33.3676	0/1:64:30,34:30:1039:34:1205:-89.4895,0,-74.5525	1/1:68:1,67:1:36:67:2381:-210.948,-16.8718,0	1/1:38:0,38:0:0:38:1353:-122.069,-11.4391,0	0/1:67:35,32:35:1231:32:1152:-83.8211,0,-90.9242	0/1:36:17,19:17:600:19:676:-50.3309,0,-43.4921	0/1:37:17,20:17:604:20:716:-53.6296,0,-43.5525	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:14:2,12:2:68:12:428:-34.6444,0,-2.24329	1/1:93:0,93:0:0:93:3323:-299.288,-27.9958,0	1/1:101:0,101:0:0:101:3599:-324.117,-30.404,0	1/1:113:0,113:0:0:113:4051:-364.776,-34.0164,0	0/1:84:32,52:32:1140:52:1872:-143.473,0,-77.6227	0/1:36:8,28:8:284:28:996:-79.1178,0,-15.0663	1/1:73:0,73:0:0:73:2581:-232.539,-21.9752,0	0/1:172:81,91:81:2876:91:3248:-240.765,0,-207.301	1/1:153:0,153:0:0:153:5447:-490.36,-46.0576,0	0/1:26:14,12:14:500:12:424:-30.6696,0,-37.5094	1/1:161:0,161:0:0:161:5764:-518.875,-48.4658,0	1/1:86:0,86:0:0:86:3052:-274.909,-25.8886,0	1/1:47:0,47:0:0:47:1685:-151.937,-14.1484,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:144:0,144:0:0:144:5114:-460.403,-43.3483,0	0/1:89:36,53:36:1284:53:1889:-143.496,0,-89.0717	0/1:34:19,15:19:665:15:535:-38.2494,0,-49.9378	.:.:.:.:.:.:.:.	0/1:64:36,28:36:1280:28:1004:-71.4099,0,-96.2373	1/1:28:0,28:0:0:28:999:-90.2245,-8.42884,0	0/1:130:75,55:75:2655:55:1959:-137.451,0,-200.063	0/1:31:18,13:18:618:13:459:-32.3122,0,-46.6088	1/1:41:0,41:0:0:41:1457:-131.424,-12.3422,0	1/1:71:0,71:0:0:71:2519:-226.962,-21.3731,0	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	1/1:148:0,148:0:0:148:5259:-473.449,-44.5524,0	1/1:88:0,88:0:0:88:3129:-281.836,-26.4906,0	1/1:79:0,79:0:0:79:2824:-254.399,-23.7814,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:114:52,62:52:1828:62:2214:-165.207,0,-130.481	0/1:47:23,24:23:820:24:864:-63.9342,0,-59.9741	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:99:42,57:42:1457:57:2048:-154.79,0,-101.617	0/1:51:25,26:25:888:26:928:-68.4857,0,-64.8865	0/1:7:2,5:2:59:5:164:-12.9744,0,-3.49693	0/1:9:2,7:2:72:7:237:-18.9507,0,-4.12745	0/1:44:24,20:24:841:20:716:-51.5224,0,-62.761	0/1:80:46,34:46:1570:34:1216:-85.6642,0,-117.501	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:163:0,163:0:0:163:5831:-524.887,-49.0679,0	1/1:98:2,96:2:68:96:3448:-304.074,-23.0432,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:63:0,63:0:0:63:2243:-202.133,-18.9649,0	1/1:83:3,80:3:108:80:2840:-245.762,-14.9103,0	0/1:117:67,50:67:2354:50:1772:-124.543,0,-176.899	1/1:19:0,19:0:0:19:660:-59.7214,-5.71957,0	1/1:60:0,60:0:0:60:2142:-193.048,-18.0618,0	1/1:49:1,48:1:36:48:1715:-151.037,-11.1522,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:110:0,110:0:0:110:3936:-354.432,-33.1133,0	0/1:71:38,33:38:1350:33:1184:-85.4952,0,-100.426	1/1:56:0,56:0:0:56:1985:-178.923,-16.8577,0	0/1:116:52,62:52:1851:62:2187:-162.417,0,-132.192	0/1:76:39,37:39:1378:37:1306:-94.9617,0,-101.439	1/1:48:0,48:0:0:48:1683:-151.754,-14.4494,0	0/1:12:4,8:4:135:8:288:-22.655,0,-8.87015	0/1:78:44,34:44:1560:34:1216:-86.2662,0,-117.211	1/1:76:0,75:0:0:75:2634:-236.949,-22.5773,0	1/1:142:0,142:0:0:142:5075:-456.623,-42.7463,0	0/1:50:24,26:24:801:26:932:-69.1474,0,-57.3448	1/1:55:1,54:1:32:54:1932:-170.957,-13.3573,0	0/1:46:19,27:19:663:27:963:-73.1386,0,-46.1461	1/1:104:1,103:1:36:103:3672:-327.029,-27.7088,0	0/1:25:15,10:15:517:10:356:-24.8555,0,-39.3289	0/1:43:18,25:18:623:25:896:-68.0161,0,-43.4488	1/1:59:0,59:0:0:59:2101:-189.359,-17.7608,0	0/1:23:18,5:18:632:5:180:-9.62837,0,-50.2831	0/1:79:50,29:50:1763:29:1040:-70.133,0,-135.171	0/1:38:21,17:21:721:17:604:-43.2515,0,-53.7674	1/1:118:0,118:0:0:118:4218:-379.8,-35.5215,0	1/1:64:1,63:1:36:63:2245:-198.705,-15.6676,0
chr03	27661555	.	TCCT	GCCT	29425.3	PASS	AB=0.550994;ABP=72.3283;AC=49;AF=0.260638;AN=188;AO=1707;CIGAR=1X3M;DP=6979;DPB=6979;DPRA=0.774369;EPP=3709.71;EPPR=11370.7;GTI=2;LEN=1;MEANALT=1.38462;MQM=59.9977;MQMR=59.9817;NS=94;NUMALT=1;ODDS=0.632367;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60939;QR=185563;RO=5235;RPL=0;RPP=3709.71;RPPR=11370.7;RPR=1707;RUN=1;SAF=1707;SAP=3709.71;SAR=0;SRF=5235;SRP=11370.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:16,35:16:570:35:1241:-96.2803,0,-35.9206	0/1:53:24,29:24:843:29:1029:-76.9665,0,-60.2328	0/1:97:19,72:19:671:72:2546:-201.64,0,-32.9685	0/0:168:168,0:168:5969:0:0:0,-50.573,-537.322	0/1:46:9,37:9:319:37:1287:-102.277,0,-15.2045	0/1:39:11,28:11:390:28:1000:-78.5752,0,-23.6983	0/1:87:44,42:44:1538:42:1493:-108.492,0,-112.54	0/0:88:88,0:88:3116:0:0:0,-26.4906,-280.668	0/0:80:80,0:80:2843:0:0:0,-24.0824,-256.109	0/1:63:26,37:26:929:37:1328:-100.857,0,-64.964	0/1:63:39,21:39:1370:21:756:-49.9456,0,-105.177	0/1:104:60,43:60:2146:43:1548:-108.247,0,-162.042	0/0:92:92,0:92:3286:0:0:0,-27.6948,-295.961	0/0:47:47,0:47:1662:0:0:0,-14.1484,-149.866	0/1:84:34,49:34:1221:49:1760:-133.339,0,-84.8518	0/1:62:30,32:30:1073:32:1148:-84.966,0,-78.219	0/1:34:17,17:17:611:17:612:-45.1784,0,-44.9296	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.232	0/1:35:22,12:22:792:12:428:-28.2642,0,-61.0108	0/0:198:198,0:198:7051:0:0:0,-59.6039,-634.03	0/0:136:135,0:135:4765:0:0:0,-40.639,-428.655	0/0:72:71,0:71:2525:0:0:0,-21.3731,-227.142	0/1:142:61,81:61:2180:81:2889:-217.498,0,-153.721	0/1:37:23,14:23:813:14:496:-33.8362,0,-62.3522	0/0:84:84,0:84:2978:0:0:0,-25.2865,-268.224	0/1:170:83,85:83:2942:85:3040:-222.917,0,-214.103	0/0:201:201,0:201:7132:0:0:0,-60.507,-641.947	0/1:32:10,22:10:354:22:788:-61.6118,0,-22.5665	0/0:192:192,0:192:6812:0:0:0,-57.7978,-613.16	0/0:58:58,0:58:2056:0:0:0,-17.4597,-185.307	0/0:92:91,0:91:3230:0:0:0,-27.3937,-290.596	0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5164	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.425	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:161:160,0:160:5703:0:0:0,-48.1648,-513.03	0/1:74:28,45:28:1006:45:1601:-122.043,0,-68.5213	0/1:35:17,18:17:610:18:635:-46.9409,0,-44.6968	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:93:39,54:39:1363:54:1932:-146.161,0,-94.9705	0/0:40:37,1:37:1294:1:36:0,-8.20069,-113.163	0/1:140:58,80:58:2062:80:2841:-214.025,0,-143.95	0/1:80:43,36:43:1533:36:1296:-92.8027,0,-114.122	0/0:72:72,0:72:2540:0:0:0,-21.6742,-228.852	0/0:105:105,0:105:3727:0:0:0,-31.6081,-335.634	0/0:72:72,0:72:2553:0:0:0,-21.6742,-230.021	0/0:86:86,0:86:3054:0:0:0,-25.8886,-275.091	0/0:80:80,0:80:2826:0:0:0,-24.0824,-254.581	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.85	0/0:100:100,0:100:3569:0:0:0,-30.103,-321.418	0/0:7:7,0:7:247:0:0:0,-2.10721,-22.5733	0/1:97:38,58:38:1339:58:2080:-158.212,0,-91.5516	0/1:42:20,22:20:711:22:788:-58.6015,0,-51.6731	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:114:48,66:48:1696:66:2345:-176.99,0,-118.608	0/1:45:24,21:24:859:21:748:-54.0989,0,-64.0856	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:75:30,45:30:1054:45:1616:-123.153,0,-72.5917	0/1:91:45,45:45:1586:45:1616:-118.278,0,-115.576	0/1:4:3,1:3:107:1:36:-2.39415,0,-8.77805	0/0:136:136,0:136:4801:0:0:0,-40.9401,-432.251	0/0:106:103,3:103:3640:3:108:0,-21.834,-317.732	0/0:55:54,0:54:1902:0:0:0,-16.2556,-171.097	0/0:65:64,0:64:2265:0:0:0,-19.2659,-203.793	0/0:85:85,0:85:2992:0:0:0,-25.5875,-269.514	0/1:91:22,69:22:790:69:2468:-194.98,0,-44.0317	0/0:46:45,1:45:1616:1:36:0,-10.2491,-142.132	0/0:30:29,0:29:1028:0:0:0,-8.72987,-92.4737	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/0:89:89,0:89:3128:0:0:0,-26.7917,-281.746	0/1:84:24,59:24:847:59:2097:-163.653,0,-51.2038	0/0:99:99,0:99:3453:0:0:0,-29.802,-310.987	0/1:170:86,84:86:3075:84:3008:-219.776,0,-225.804	0/1:70:35,35:35:1218:35:1222:-89.2074,0,-88.8478	0/0:101:101,0:101:3606:0:0:0,-30.404,-324.747	0/1:8:5,3:5:177:3:108:-7.66693,0,-13.8686	0/1:106:45,61:45:1589:61:2169:-163.566,0,-111.39	0/0:85:84,0:84:2987:0:0:0,-25.2865,-268.704	0/0:134:134,0:134:4706:0:0:0,-40.338,-423.705	0/1:53:28,25:28:976:25:896:-65.0058,0,-72.1957	0/0:71:71,0:71:2519:0:0:0,-21.3731,-226.963	0/1:50:35,15:35:1249:15:536:-33.5233,0,-97.6631	0/0:147:143,3:143:5084:3:104:0,-34.6041,-448	0/1:17:7,10:7:245:10:360:-27.6268,0,-17.273	0/1:57:26,31:26:926:31:1116:-83.593,0,-66.4989	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.918	0/1:41:25,15:25:875:15:540:-36.5355,0,-66.6652	0/1:86:47,39:47:1643:39:1400:-100.411,0,-122.266	0/1:107:34,72:34:1209:72:2588:-200.899,0,-76.8475	0/0:95:94,0:94:3294:0:0:0,-28.2968,-296.321	0/0:102:102,0:102:3634:0:0:0,-30.7051,-327.267
chr03	27670729	.	CAA	CAG,TAG	263190	PASS	AB=0.477362,0.521334;ABP=26.9014,24.2278;AC=139,47;AF=0.747312,0.252688;AN=186;AO=9406,2811;CIGAR=2M1X,1X1M1X;DP=12233;DPB=12235;DPRA=0,0.989721;EPP=20427.9,6107.02;EPPR=5.18177;GTI=1;LEN=1,3;MEANALT=1.70968,2.07273;MQM=59.997,60;MQMR=60;NS=93;NUMALT=2;ODDS=2.09879;PAIRED=0,0;PAIREDR=0;PAO=0,6;PQA=0,212;PQR=0;PRO=0;QA=336471,97691;QR=131;RO=4;RPL=9406,2811;RPP=20427.9,6107.02;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=20427.9,6107.02;SAR=9406,2811;SRF=1;SRP=5.18177;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,18,25:0:0:18,25:648,877:-124.239,-71.3618,-65.9433,-52.8735,0,-45.3478	1/2:307:0,162,145:0:0:162,145:5804,5076:-886.7,-413.347,-364.581,-473.706,0,-430.057	1/2:142:0,69,73:0:0:69,73:2457,2555:-408.486,-208.227,-187.456,-200.612,0,-178.637	1/1:410:1,409,0:1:31:409,0:14636,0:-1313.88,-120.323,0,-1314.18,-123.121,-1316.67	1/2:88:0,42,46:0:0:42,46:1508,1580:-251.657,-128.637,-115.994,-123.371,0,-109.524	1/2:64:0,36,28:0:0:36,28:1280,995:-185.747,-81.4365,-70.5994,-104.666,0,-96.2373	1/2:132:0,38,94:0:0:38,94:1360,3234:-373.899,-262.992,-251.553,-111.261,0,-82.9646	1/2:167:0,80,87:0:0:80,87:2849,3014:-477.518,-245.305,-221.222,-232.565,0,-206.375	1/1:136:0,136,0:0:0:136,0:4868,0:-438.273,-40.9401,0,-438.273,-40.9401,-438.273	1/2:119:0,51,68:0:0:51,68:1824,2361:-341.016,-192.28,-176.928,-149.089,0,-128.619	1/2:61:0,35,26:0:0:35,26:1256,900:-175.585,-73.1278,-62.5918,-102.449,0,-94.6227	1/2:87:0,34,53:0:0:34,53:1216,1841:-249.171,-150.013,-139.778,-99.5115,0,-83.557	1/1:78:0,78,0:0:0:78,0:2788,0:-251.161,-23.4803,0,-251.161,-23.4803,-251.161	1/1:83:0,82,0:0:0:82,0:2940,0:-264.474,-24.6845,0,-264.474,-24.6845,-264.474	1/2:89:0,47,42:0:0:47,42:1684,1455:-255.946,-118.599,-104.451,-137.699,0,-125.055	1/2:58:0,29,29:0:0:29,29:1040,1014:-167.671,-82.8409,-74.111,-85.1845,0,-76.4546	1/2:86:0,43,43:0:0:43,43:1525,1519:-248.302,-124.059,-111.115,-124.597,0,-111.653	1/1:66:0,66,0:0:0:66,0:2376,0:-214.097,-19.868,0,-214.097,-19.868,-214.097	1/2:27:0,12,15:0:0:12,15:428,536:-78.9492,-44.0596,-40.4472,-35.2464,0,-30.731	1/1:226:0,225,0:0:0:225,0:8013,0:-720.833,-67.7318,0,-720.833,-67.7318,-720.833	1/1:210:0,210,0:0:0:210,0:7504,0:-675.404,-63.2163,0,-675.404,-63.2163,-675.404	1/1:112:0,112,0:0:0:112,0:3985,0:-358.841,-33.7154,0,-358.841,-33.7154,-358.841	1/2:149:0,73,76:0:0:73,76:2601,2644:-427.342,-215.332,-193.357,-212.362,0,-189.484	1/2:218:0,97,121:0:0:97,121:3480,4162:-622.211,-338.352,-309.152,-284.211,0,-247.786	1/1:112:0,112,0:0:0:112,0:4012,0:-361.269,-33.7154,0,-361.269,-33.7154,-361.269	1/2:515:2,265,247:2:72:265,247:9492,8571:-1464.34,-690.828,-616.93,-768.23,0,-699.751	1/1:213:0,213,0:0:0:213,0:7628,0:-686.557,-64.1194,0,-686.557,-64.1194,-686.557	1/2:37:0,20,17:0:0:20,17:716,588:-106.522,-48.1264,-42.1058,-58.7471,0,-53.6296	1/1:340:0,339,0:0:0:339,0:12132,0:-1091.37,-102.049,0,-1091.37,-102.049,-1091.37	1/1:191:0,191,0:0:0:191,0:6852,0:-616.748,-57.4967,0,-616.748,-57.4967,-616.748	1/1:200:0,200,0:0:0:200,0:7184,0:-646.612,-60.206,0,-646.612,-60.206,-646.612	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:11:0,5,6:0:0:5,6:176,213:-32.0368,-17.7101,-16.205,-14.6799,0,-12.8737	.:.:.:.:.:.:.:.	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:211:0,211,0:0:0:211,0:7541,0:-678.73,-63.5173,0,-678.73,-63.5173,-678.73	1/2:217:0,113,104:0:0:113,104:4043,3582:-620.978,-291.288,-257.272,-330.041,0,-298.734	1/2:38:0,19,19:0:0:19,19:680,678:-111.082,-55.6293,-49.9098,-55.8096,0,-50.09	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:230:0,123,107:0:0:123,107:4392,3725:-661.322,-303.247,-266.22,-358.428,0,-326.217	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/2:224:0,100,124:0:0:100,124:3584,4344:-645.766,-353.457,-323.354,-292.304,0,-254.976	1/2:133:0,64,67:0:0:64,67:2296,2356:-379.051,-191.771,-172.505,-187.275,0,-167.106	1/1:78:0,78,0:0:0:78,0:2757,0:-248.372,-23.4803,0,-248.372,-23.4803,-248.372	1/1:128:0,128,0:0:0:128,0:4584,0:-412.725,-38.5318,0,-412.725,-38.5318,-412.725	1/1:135:0,133,2:0:0:133,2:4745,72:-426.848,-40.037,0,-420.973,-33.8023,-420.371	1/1:294:0,293,0:0:0:293,0:10496,0:-944.195,-88.2018,0,-944.195,-88.2018,-944.195	1/1:129:0,128,1:0:0:128,1:4576,36:-411.646,-38.5318,0,-408.709,-35.2346,-408.408	1/1:282:0,281,0:0:0:281,0:10072,0:-906.052,-84.5894,0,-906.052,-84.5894,-906.052	1/1:198:0,197,0:0:0:197,0:7045,0:-633.771,-59.3029,0,-633.771,-59.3029,-633.771	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:159:0,91,67:0:0:91,67:3264,2296:-452.611,-186.375,-158.981,-266.226,0,-246.057	1/2:110:0,60,50:0:0:60,50:2148,1754:-318.265,-143.093,-125.031,-175.526,0,-160.474	1/2:10:0,5,5:0:0:5,5:180,176:-29.3712,-14.6801,-13.1749,-15.0469,0,-13.5418	1/2:190:0,84,106:0:0:84,106:3004,3647:-541.489,-296.535,-271.248,-245.305,0,-213.396	1/2:76:0,35,41:0:0:35,41:126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chr03	27693718	.	C	T	86091.9	PASS	AB=0.465289;ABP=29.8437;AC=138;AF=0.75;AN=184;AO=3937;CIGAR=1X;DP=5317;DPB=5317;DPRA=0;EPP=7913.07;EPPR=2759.2;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9876;MQMR=59.9993;NS=92;NUMALT=1;ODDS=0.956301;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140909;QR=49065;RO=1379;RPL=3862;RPP=7913.07;RPPR=2759.2;RPR=75;RUN=1;SAF=0;SAP=8552.1;SAR=3937;SRF=0;SRP=2997.47;SRR=1379;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:85:35,50:35:1248:50:1779:-134.805,0,-87.0373	0/1:38:18,20:18:635:20:712:-52.9675,0,-46.0378	1/1:92:0,92:0:0:92:3266:-294.161,-27.6948,0	0/1:21:13,8:13:464:8:277:-18.8855,0,-35.7759	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/1:65:35,30:35:1237:30:1076:-77.5859,0,-92.0653	0/1:97:34,63:34:1207:63:2252:-173.743,0,-79.7354	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:57:25,32:25:896:32:1148:-86.4711,0,-63.8016	0/1:78:47,31:47:1671:31:1108:-76.5507,0,-127.196	0/1:64:36,28:36:1279:28:1008:-71.5801,0,-96.1465	1/1:69:0,69:0:0:69:2464:-222.013,-20.7711,0	1/1:103:0,103:0:0:103:3686:-331.943,-31.0061,0	0/1:59:23,36:23:824:36:1288:-98.4628,0,-56.7225	0/1:53:26,27:26:928:27:972:-71.8433,0,-67.8837	0/1:97:50,47:50:1788:47:1684:-122.647,0,-132.003	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:55:31,24:31:1108:24:864:-61.5259,0,-83.4743	1/1:66:0,66:0:0:66:2362:-212.838,-19.868,0	1/1:59:0,59:0:0:59:2109:-190.078,-17.7608,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:74:44,30:44:1568:30:1080:-75.237,0,-119.135	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:150:88,62:88:3139:62:2220:-154.91,0,-237.581	1/1:88:0,88:0:0:88:3168:-285.343,-26.4906,0	0/1:28:15,13:15:536:13:464:-33.6687,0,-40.146	1/1:93:3,90:3:108:90:3214:-279.408,-17.9206,0	1/1:71:0,71:0:0:71:2542:-229.031,-21.3731,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	.:.:.:.:.:.:.:.	0/1:9:5,4:5:176:4:136:-9.86627,0,-13.4757	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:168:0,168:0:0:168:6024:-542.263,-50.573,0	0/1:100:61,39:61:2180:39:1399:-96.1061,0,-166.363	0/1:67:38,29:38:1351:29:1044:-74.1058,0,-101.721	.:.:.:.:.:.:.:.	0/1:56:33,23:33:1162:23:812:-56.5427,0,-88.0276	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:69:29,40:29:1023:40:1436:-108.767,0,-71.6107	0/1:55:26,29:26:909:29:1044:-77.7182,0,-65.5668	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	1/1:60:0,60:0:0:60:2147:-193.497,-18.0618,0	1/1:53:0,53:0:0:53:1886:-170.018,-15.9546,0	1/1:65:0,65:0:0:65:2327:-209.69,-19.567,0	1/1:55:0,55:0:0:55:1960:-176.675,-16.5567,0	1/1:70:0,70:0:0:70:2497:-224.982,-21.0721,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:47:31,16:31:1112:16:576:-38.0266,0,-86.2429	0/1:31:18,13:18:648:13:464:-32.7656,0,-49.32	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:41:20,21:20:716:21:756:-56.025,0,-52.4255	0/1:21:10,11:10:356:11:392:-29.2984,0,-26.0596	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:45:22,23:22:775:23:828:-61.2978,0,-56.5248	0/1:114:69,45:69:2472:45:1595:-109.521,0,-188.416	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:148:2,146:2:72:146:5226:-463.641,-37.7157,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:73:1,72:1:36:72:2576:-228.491,-18.3769,0	0/1:76:60,16:60:2131:16:576:-29.2967,0,-169.18	1/1:36:1,35:1:36:35:1245:-108.754,-7.23881,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:116:0,116:0:0:116:4172:-375.66,-34.9195,0	0/1:27:22,5:22:792:5:180:-8.42425,0,-63.4779	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0	0/1:53:24,29:24:860:29:1036:-77.5993,0,-61.7672	1/1:45:0,45:0:0:45:1598:-144.109,-13.5464,0	0/1:46:29,17:29:1040:17:608:-41.2046,0,-80.067	0/1:85:50,34:50:1770:34:1220:-84.5963,0,-134.073	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:11:6,5:6:204:5:180:-13.2407,0,-15.382	0/1:48:21,27:21:735:27:964:-72.6274,0,-52.022	1/1:30:0,30:0:0:30:1049:-94.7168,-9.0309,0	1/1:58:0,58:0:0:58:2074:-186.929,-17.4597,0	0/1:79:42,37:42:1492:37:1332:-96.401,0,-110.793	1/1:70:0,70:0:0:70:2491:-224.442,-21.0721,0	0/1:72:36,36:36:1292:36:1287:-94.4593,0,-94.9096	1/1:139:1,138:1:36:138:4952:-442.229,-38.2449,0	0/1:30:17,13:17:599:13:459:-32.6138,0,-45.2072	0/1:59:33,26:33:1171:26:936:-66.7987,0,-87.9359	1/1:59:1,58:1:36:58:2069:-182.881,-14.1625,0	0/1:75:29,46:29:1015:46:1647:-125.941,0,-69.0836	0/1:112:52,60:52:1824:60:2137:-158.882,0,-130.723	0/1:49:34,15:34:1220:15:536:-33.8243,0,-95.3563	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:102:0,102:0:0:102:3664:-329.963,-30.7051,0
chr03	27693725	.	C	G	24341.2	PASS	AB=0.54734;ABP=52.7639;AC=46;AF=0.25;AN=184;AO=1406;CIGAR=1X;DP=5257;DPB=5257;DPRA=1.12;EPP=2995.6;EPPR=8237.68;GTI=0;LEN=1;MEANALT=1.02;MQM=59.9986;MQMR=59.9836;NS=92;NUMALT=1;ODDS=1.88011;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50102;QR=137532;RO=3848;RPL=1399;RPP=2995.6;RPPR=8237.68;RPR=7;RUN=1;SAF=0;SAP=3056.1;SAR=1406;SRF=0;SRP=8358.84;SRR=3848;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	0/1:86:51,35:51:1832:35:1225:-84.6629,0,-139.272	0/1:37:17,20:17:612:20:712:-53.2685,0,-44.2753	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/1:21:8,13:8:284:13:464:-35.7759,0,-19.3508	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:64:29,35:29:1035:35:1252:-93.7192,0,-74.1971	0/1:95:60,35:60:2152:35:1248:-84.027,0,-165.349	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/1:59:32,27:32:1144:27:972:-70.0371,0,-85.5087	0/1:75:28,47:28:1004:47:1684:-129.27,0,-68.0986	0/1:64:28,36:28:1000:36:1284:-96.5975,0,-71.0495	0/0:70:70,0:70:2452:0:0:0,-21.0721,-220.932	0/0:100:100,0:100:3564:0:0:0,-30.103,-320.969	0/1:60:34,26:34:1220:26:928:-65.7765,0,-92.045	0/1:52:26,26:26:936:26:936:-68.9059,0,-68.9059	0/1:96:45,51:45:1612:51:1828:-135.902,0,-116.471	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:54:23,31:23:828:31:1112:-84.1357,0,-58.5885	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/0:58:57,0:57:2044:0:0:0,-17.1587,-183.872	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:74:30,44:30:1072:44:1561:-118.504,0,-74.5162	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:151:60,91:60:2148:91:3242:-246.547,0,-148.132	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/1:25:10,15:10:360:15:540:-41.4108,0,-25.2186	0/0:94:91,3:91:3244:3:108:0,-18.2216,-281.617	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	.:.:.:.:.:.:.:.	0/1:9:4,5:4:144:5:165:-12.4643,0,-10.6043	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:163:163,0:163:5828:0:0:0,-49.0679,-524.634	0/1:102:39,63:39:1404:63:2241:-171.247,0,-95.9542	0/1:66:28,38:28:1000:38:1353:-102.201,0,-70.4474	.:.:.:.:.:.:.:.	0/1:55:22,33:22:788:33:1179:-89.8612,0,-54.6881	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:69:38,31:38:1368:31:1095:-78.088,0,-102.65	0/1:56:29,27:29:1036:27:968:-70.5797,0,-76.6962	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:65:64,0:64:2273:0:0:0,-19.2659,-204.51	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:48:16,32:16:572:32:1128:-87.3761,0,-37.364	0/1:30:12,18:12:428:18:644:-49.2597,0,-29.8279	0/1:13:5,7:5:180:7:248:-18.6927,0,-12.5799	0/1:42:22,20:22:788:20:708:-51.4018,0,-58.6015	0/1:20:10,10:10:360:10:356:-26.3606,0,-26.7237	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:11:8,3:8:288:3:104:-6.39148,0,-22.9561	0/1:44:21,23:21:756:23:828:-61.5988,0,-55.1219	0/1:112:41,71:41:1472:71:2521:-193.426,0,-99.0608	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.995	0/0:146:144,2:144:5151:2:72:0,-37.1137,-456.894	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/0:73:72,1:72:2571:1:36:0,-18.3769,-228.041	0/1:77:16,61:16:576:61:2179:-173.196,0,-28.9957	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.165	0/0:112:112,0:112:4007:0:0:0,-33.7154,-360.819	0/1:27:5,22:5:180:22:784:-62.7561,0,-8.42425	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:52:29,23:29:1027:23:824:-58.8298,0,-77.0886	0/0:44:44,0:44:1558:0:0:0,-13.2453,-140.51	0/1:45:16,29:16:576:29:1032:-79.6471,0,-38.6286	0/1:89:35,54:35:1252:54:1908:-145.204,0,-86.1934	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/1:11:5,6:5:180:6:207:-15.6556,0,-13.2407	0/1:49:28,21:28:1004:21:743:-52.4429,0,-75.9254	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:79:35,44:35:1256:44:1556:-116.55,0,-89.5639	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/1:72:36,36:36:1279:36:1296:-95.2698,0,-93.7383	0/0:135:134,1:134:4800:1:36:0,-37.0408,-428.557	0/1:32:13,19:13:456:19:676:-51.535,0,-31.7403	0/1:58:25,33:25:883:33:1188:-89.7689,0,-62.3277	0/0:56:56,0:56:1978:0:0:0,-16.8577,-178.293	0/1:75:45,30:45:1608:30:1072:-74.2152,0,-122.433	0/1:109:57,52:57:2039:52:1847:-133.696,0,-150.969	0/1:49:15,34:15:536:34:1224:-95.7166,0,-33.8243	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.646
chr03	27732115	.	G	A	22035.9	PASS	AB=0.46325;ABP=37.8036;AC=47;AF=0.255435;AN=184;AO=1381;CIGAR=1X;DP=7799;DPB=7799;DPRA=0.658093;EPP=3001.81;EPPR=13933;GTI=6;LEN=1;MEANALT=1.02;MQM=59.4671;MQMR=59.494;NS=92;NUMALT=1;ODDS=1.22872;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49531;QR=229136;RO=6415;RPL=0;RPP=3001.81;RPPR=13933;RPR=1381;RUN=1;SAF=1381;SAP=3001.81;SAR=0;SRF=6415;SRP=13933;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/1:65:37,28:37:1324:28:1008:-71.4518,0,-99.8599	0/1:152:107,45:107:3829:45:1605:-98.918,0,-298.967	0/0:197:197,0:197:7045:0:0:0,-59.3029,-633.99	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7176	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.7232	0/1:44:27,17:27:960:17:612:-42.1512,0,-73.4685	0/1:123:65,58:65:2301:58:2088:-151.145,0,-168.916	0/0:94:94,0:94:3376:0:0:0,-28.2968,-303.712	0/1:80:33,47:33:1184:47:1685:-127.833,0,-82.7753	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.254	0/1:74:40,34:40:1440:34:1220:-87.8235,0,-107.621	0/0:80:80,0:80:2842:0:0:0,-24.0824,-255.997	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.334	0/1:45:23,22:23:824:22:784:-57.3351,0,-60.922	0/1:50:34,16:34:1224:16:572:-36.7619,0,-95.3803	0/1:26:9,17:9:316:17:604:-46.8638,0,-20.8024	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.11	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.0908	0/0:160:160,0:160:5748:0:0:0,-48.1648,-517.215	0/0:156:156,0:156:5551:0:0:0,-46.9607,-499.62	0/0:87:87,0:87:3101:0:0:0,-26.1896,-279.276	0/1:128:90,38:90:3217:38:1364:-84.5182,0,-251.033	0/1:74:31,43:31:1108:43:1548:-116.617,0,-77.7548	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.51	0/1:197:108,89:108:3868:89:3200:-228.827,0,-288.957	0/0:238:237,0:237:8451:0:0:0,-71.3441,-760.01	0/1:27:16,11:16:576:11:396:-27.8372,0,-44.0472	0/0:293:292,0:292:10458:0:0:0,-87.9008,-940.779	0/0:146:145,1:145:5192:1:36:0,-40.7042,-463.854	0/0:87:87,0:87:3104:0:0:0,-26.1896,-279.577	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.057	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5231	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:167:167,0:167:5965:0:0:0,-50.272,-536.854	0/1:139:90,49:90:3209:49:1764:-117.183,0,-247.04	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	.:.:.:.:.:.:.:.	0/1:86:56,30:56:1993:30:1065:-70.2536,0,-153.694	0/0:24:24,0:24:841:0:0:0,-7.22472,-75.9872	0/1:79:55,24:55:1976:24:864:-54.2836,0,-154.298	0/1:48:28,20:28:989:20:720:-50.658,0,-74.8726	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:96:96,0:96:3429:0:0:0,-28.8989,-308.757	0/0:114:114,0:114:4058:0:0:0,-34.3174,-364.4	0/0:205:205,0:205:7326:0:0:0,-61.7111,-659.042	0/0:114:114,0:114:4069:0:0:0,-34.3174,-366.377	0/0:114:114,0:114:4061:0:0:0,-34.3174,-365.634	0/0:76:76,0:76:2697:0:0:0,-22.8783,-242.888	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:85:42,43:42:1497:43:1548:-113.98,0,-109.298	0/1:47:28,19:28:1004:19:684:-47.7206,0,-76.5061	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:140:66,74:66:2360:74:2664:-197.81,0,-170.497	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:21:6,15:6:212:15:525:-41.2564,0,-13.1032	0/1:79:37,42:37:1328:42:1504:-111.852,0,-95.9995	0/1:73:42,31:42:1512:31:1097:-77.051,0,-114.335	.:.:.:.:.:.:.:.	0/0:306:306,0:306:10935:0:0:0,-92.1152,-983.956	0/0:182:182,0:182:6487:0:0:0,-54.7875,-583.864	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.41	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.647	0/0:194:189,5:189:6699:5:180:0,-41.8478,-585.68	0/1:130:44,86:44:1580:86:3081:-238.329,0,-103.326	0/0:29:29,0:29:1010:0:0:0,-8.72987,-91.1788	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.481	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.086	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5192	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.964	0/1:104:37,67:37:1332:67:2381:-183.179,0,-88.7621	0/0:153:153,0:153:5454:0:0:0,-46.0576,-490.92	0/1:197:105,91:105:3756:91:3264:-234.619,0,-278.867	0/1:42:24,18:24:856:18:648:-45.9915,0,-64.7178	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.15	0/1:8:4,4:4:144:4:144:-10.7966,0,-10.9054	0/1:118:62,56:62:2183:56:2008:-145.24,0,-161.129	0/0:126:126,0:126:4501:0:0:0,-37.9298,-404.807	0/0:224:224,0:224:7994:0:0:0,-67.4307,-719.02	0/1:56:25,31:25:896:31:1112:-83.512,0,-64.1027	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.26	0/1:43:22,21:22:777:21:756:-55.4229,0,-57.3061	0/0:120:119,1:119:4276:1:36:0,-32.5253,-381.363	0/1:17:8,9:8:269:9:324:-24.3883,0,-19.4008	0/1:49:29,20:29:1040:20:720:-50.0898,0,-79.131	0/0:81:81,0:81:2885:0:0:0,-24.3834,-259.823	0/1:23:8,15:8:288:15:540:-41.9845,0,-19.3259	0/1:76:34,42:34:1216:42:1512:-113.468,0,-85.5018	0/1:47:17,30:17:612:30:1076:-82.9938,0,-41.0366	0/0:183:183,0:183:6529:0:0:0,-55.0885,-587.585	0/0:99:99,0:99:3526:0:0:0,-29.802,-317.514
chr03	27732157	.	AACCA	CACCG,CACCA	157342	PASS	AB=0.537804,0.45467;ABP=39.2939,55.1799;AC=137,47;AF=0.744565,0.255435;AN=184;AO=6378,1337;CIGAR=1X3M1X,1X4M;DP=7758;DPB=7759.4;DPRA=0,0.665311;EPP=13852.7,2906.27;EPPR=5.18177;GTI=6;LEN=5,1;MEANALT=2,2.46154;MQM=59.4658,59.5572;MQMR=60;NS=92;NUMALT=2;ODDS=2.65438;PAIRED=0,0;PAIREDR=0;PAO=3,3;PQA=99.5,99.5;PQR=0;PRO=1;QA=216588,46787;QR=24;RO=1;RPL=6378,1337;RPP=13852.7,2906.27;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=6378,1337;SAP=13852.7,2906.27;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:15:0,11,4:0:0:11,4:360,144:-41.1631,-12.1095,-8.79817,-29.4047,0,-28.2006	1/2:65:0,38,27:0:0:38,27:1283,952:-181.816,-77.8497,-66.4106,-104.312,0,-96.1842	1/2:151:0,108,42:0:0:108,42:3682,1465:-417.971,-119.256,-86.7452,-298.845,0,-286.202	1/1:197:0,197,0:0:0:197,0:6672,0:-600.531,-59.3029,0,-600.531,-59.3029,-600.531	1/2:16:0,5,11:0:0:5,11:172,379:-45.0868,-31.1292,-29.6241,-14.3015,0,-10.9901	1/2:15:0,8,7:0:0:8,7:266,252:-42.4008,-20.9217,-18.5135,-21.8259,0,-19.7187	1/2:43:0,25,17:0:0:25,17:862,593:-118.271,-48.248,-40.7223,-70.048,0,-64.9305	1/2:124:0,63,59:0:0:63,59:2120,2068:-339.903,-168.379,-149.414,-171.617,0,-153.857	1/1:96:0,96,0:0:0:96,0:3249,0:-292.534,-28.8989,0,-292.534,-28.8989,-292.534	1/2:77:0,33,44:0:0:33,44:1107,1542:-215.464,-125.812,-115.878,-89.9939,0,-76.7486	1/2:32:0,19,13:0:0:19,13:655,452:-90.3035,-37.0977,-31.3781,-53.5522,0,-49.6388	1/2:74:0,40,34:0:0:40,34:1322,1162:-201.447,-94.5508,-82.5096,-107.232,0,-96.9971	1/1:80:0,79,0:0:0:79,0:2681,0:-241.258,-23.7814,0,-241.258,-23.7814,-241.258	1/1:58:0,58,0:0:0:58,0:1941,0:-174.961,-17.4597,0,-174.961,-17.4597,-174.961	1/2:45:0,24,21:0:0:24,21:816,743:-127.04,-60.8655,-53.6408,-66.522,0,-60.2004	1/2:49:0,33,16:0:0:33,16:1106,555:-134.994,-45.4596,-35.5256,-89.8769,0,-85.0604	1/2:25:0,8,16:0:0:8,16:256,536:-64.1457,-43.5241,-41.1158,-20.7229,0,-15.9065	1/1:37:0,37,0:0:0:37,0:1238,0:-111.659,-11.1381,0,-111.659,-11.1381,-111.659	1/2:15:0,11,4:0:0:11,4:365,144:-41.6131,-12.1095,-8.79817,-29.8559,0,-28.6518	1/1:159:0,159,0:0:0:159,0:5415,0:-487.307,-47.8638,0,-487.307,-47.8638,-487.307	1/1:159:0,158,0:0:0:158,0:5305,0:-477.23,-47.5627,0,-477.23,-47.5627,-477.23	1/1:88:0,88,0:0:0:88,0:3022,0:-272.189,-26.4906,0,-272.189,-26.4906,-272.189	1/2:126:0,90,36:0:0:90,36:3042,1273:-350.502,-104.023,-76.9305,-246.828,0,-235.99	1/2:75:0,34,41:0:0:34,41:1155,1434:-210.408,-116.736,-106.501,-94.0152,0,-81.673	1/1:40:0,38,1:0:0:38,1:1310,36:-117.863,-11.4391,0,-114.925,-8.46178,-114.624	1/2:194:0,107,87:0:0:107,87:3617,3066:-543.129,-249.968,-217.758,-293.507,0,-267.318	1/1:241:0,239,1:0:0:239,1:8051,36:-724.16,-71.9462,0,-721.222,-68.9888,-720.921	1/2:26:0,16,9:0:0:16,9:527,308:-67.6404,-25.0478,-20.2313,-42.6346,0,-39.9254	1/1:289:0,289,0:0:0:289,0:9955,0:-895.818,-86.9977,0,-895.818,-86.9977,-895.818	1/1:144:0,142,0:0:0:142,0:4820,0:-433.518,-42.7463,0,-433.518,-42.7463,-433.518	1/1:87:0,86,1:0:0:86,1:2909,36:-261.46,-25.8886,0,-258.522,-22.5913,-258.221	1/1:3:0,3,0:0:0:3,0:104,0:-9.69373,-0.90309,0,-9.69373,-0.90309,-9.69373	1/2:6:0,5,1:0:0:5,1:176,36:-17.6188,-3.29724,-1.79209,-14.68,0,-14.379	1/2:4:0,3,1:0:0:3,1:94,36:-10.8163,-3.29724,-2.39415,-7.86727,0,-7.56624	1/1:5:0,4,0:0:0:4,0:141,0:-12.7509,-1.20412,0,-12.7509,-1.20412,-12.7509	1/1:7:0,7,0:0:0:7,0:237,0:-21.6608,-2.10721,0,-21.6608,-2.10721,-21.6608	1/1:165:0,165,0:0:0:165,0:5585,0:-502.724,-49.67,0,-502.724,-49.67,-502.724	1/2:137:0,89,47:0:0:89,47:3004,1640:-376.748,-133.362,-106.57,-243.374,0,-229.226	1/2:28:0,17,11:0:0:17,11:581,383:-78.641,-31.4919,-26.3744,-47.4946,0,-44.1833	.:.:.:.:.:.:.:.	1/2:83:0,50,31:0:0:50,31:1698,1067:-224.357,-86.6516,-71.6001,-137.718,0,-128.386	1/1:24:0,24,0:0:0:24,0:801,0:-72.3836,-7.22472,0,-72.3836,-7.22472,-72.3836	1/2:76:0,53,22:0:0:53,22:1850,770:-213.082,-62.6373,-46.6827,-150.435,0,-143.812	1/2:48:0,28,20:0:0:28,20:971,716:-137.646,-58.7258,-50.2969,-79.2734,0,-73.2528	1/1:58:0,58,0:0:0:58,0:1979,0:-178.386,-17.4597,0,-178.386,-17.4597,-178.386	1/1:97:0,96,0:0:0:96,0:3277,0:-294.737,-28.8989,0,-294.737,-28.8989,-294.737	1/1:115:0,115,0:0:0:115,0:3937,0:-354.33,-34.6185,0,-354.33,-34.6185,-354.33	1/1:210:0,208,0:0:0:208,0:7093,0:-637.826,-62.6142,0,-637.826,-62.6142,-637.826	1/1:113:0,112,0:0:0:112,0:3816,0:-343.428,-33.7154,0,-343.428,-33.7154,-343.428	1/1:111:0,111,0:0:0:111,0:3796,0:-341.82,-33.4143,0,-341.82,-33.4143,-341.82	1/1:77:0,77,0:0:0:77,0:2627,0:-236.676,-23.1793,0,-236.676,-23.1793,-236.676	1/1:10:0,9,0:0:0:9,0:304,0:-27.3665,-2.70927,0,-27.3665,-2.70927,-27.3665	1/2:84:0,39,43:0:0:39,43:1337,1485:-229.16,-120.647,-108.907,-108.544,0,-95.6002	1/2:46:0,27,18:0:0:27,18:909,639:-125.7,-52.0613,-43.9334,-73.6286,0,-68.2101	1/2:8:0,5,3:0:0:5,3:169,108:-22.8583,-9.17208,-7.66693,-14.0378,0,-13.1347	1/2:138:0,66,72:0:0:66,72:2237,2523:-386.99,-205.622,-185.754,-181.712,0,-160.038	1/2:23:0,9,13:0:0:9,13:303,460:-62.0062,-37.4626,-34.7533,-24.5295,0,-20.6161	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0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chr03	27732206	.	A	G	89059.6	PASS	AB=0.503451;ABP=3.25012;AC=137;AF=0.736559;AN=186;AO=4220;CIGAR=1X;DP=5379;DPB=5379;DPRA=29.2228;EPP=9166.62;EPPR=2519.75;GTI=3;LEN=1;MEANALT=1;MQM=57.0057;MQMR=59.7196;NS=93;NUMALT=1;ODDS=0.331837;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150049;QR=41188;RO=1159;RPL=0;RPP=9166.62;RPPR=2519.75;RPR=4220;RUN=1;SAF=0;SAP=9166.62;SAR=4220;SRF=0;SRP=2519.75;SRR=1159;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:12,15:12:419:15:540:-40.7583,0,-29.8697	0/1:27:7,20:7:252:20:703:-55.2411,0,-14.8978	0/1:86:48,38:48:1693:38:1350:-95.7275,0,-126.762	1/1:174:0,174:0:0:174:6181:-555.775,-52.3792,0	1/1:5:0,5:0:0:5:176:-16.1781,-1.50515,0	0/1:31:14,17:14:504:17:600:-44.9462,0,-36.3628	0/1:45:24,21:24:856:21:747:-53.5828,0,-63.8138	0/1:151:63,88:63:2240:88:3145:-237.244,0,-156.395	1/1:95:0,95:0:0:95:3362:-301.136,-28.5979,0	0/1:60:27,33:27:959:33:1176:-88.0723,0,-68.5636	0/1:36:11,25:11:388:25:896:-70.0979,0,-24.4203	0/1:91:41,50:41:1443:50:1774:-132.178,0,-102.768	1/1:88:0,88:0:0:88:3138:-281.98,-26.4906,0	1/1:48:0,48:0:0:48:1716:-154.397,-14.4494,0	0/1:43:20,23:20:720:23:824:-61.53,0,-52.1845	0/1:43:14,29:14:496:29:1036:-80.4966,0,-32.0269	0/1:33:10,23:10:360:23:815:-63.6598,0,-22.8036	1/1:44:0,44:0:0:44:1576:-141.881,-13.2453,0	0/1:8:5,3:5:180:3:108:-7.65655,0,-14.1438	1/1:29:0,29:0:0:29:1040:-93.7714,-8.72987,0	1/1:112:0,112:0:0:112:3961:-356.422,-33.7154,0	1/1:17:0,17:0:0:17:604:-54.6336,-5.11751,0	0/1:60:34,26:34:1193:26:921:-65.133,0,-89.1812	0/1:18:6,12:6:216:12:417:-32.4227,0,-14.3686	1/1:11:0,11:0:0:11:396:-35.7678,-3.31133,0	0/1:161:89,72:89:3160:72:2571:-182.754,0,-236.158	1/1:120:0,120:0:0:120:4267:-383.632,-36.1236,0	0/1:24:13,11:13:468:11:392:-28.3042,0,-35.2349	1/1:100:0,100:0:0:100:3563:-320.787,-30.103,0	1/1:85:0,85:0:0:85:3029:-272.449,-25.5876,0	1/1:50:0,50:0:0:50:1796:-161.814,-15.0515,0	1/1:7:0,7:0:0:7:252:-23.0211,-2.10721,0	0/1:16:5,11:5:180:11:392:-30.7874,0,-11.7356	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	1/1:16:0,16:0:0:16:557:-50.299,-4.81648,0	1/1:188:0,188:0:0:188:6694:-602.116,-56.5936,0	0/1:54:25,29:25:868:29:1023:-75.9635,0,-62.1773	0/1:34:14,20:14:504:20:708:-53.7495,0,-35.3564	.:.:.:.:.:.:.:.	0/1:100:62,38:62:2211:38:1341:-90.761,0,-169.041	1/1:18:0,18:0:0:18:625:-56.5207,-5.41854,0	0/1:70:30,40:30:1072:40:1421:-106.902,0,-75.7188	0/1:41:17,24:17:599:24:847:-64.1093,0,-41.8955	1/1:67:0,67:0:0:67:2355:-211.96,-20.169,0	1/1:58:0,58:0:0:58:2062:-185.841,-17.4597,0	1/1:28:0,28:0:0:28:984:-88.5964,-8.42884,0	1/1:100:0,100:0:0:100:3555:-319.869,-30.103,0	1/1:53:0,53:0:0:53:1900:-171.206,-15.9546,0	1/1:98:0,98:0:0:98:3490:-314.183,-29.5009,0	1/1:23:0,23:0:0:23:811:-73.3062,-6.92369,0	1/1:14:0,14:0:0:14:496:-44.9661,-4.21442,0	0/1:67:28,39:28:989:39:1396:-105.534,0,-68.2103	0/1:43:24,19:24:856:19:672:-47.8586,0,-64.4168	0/1:15:12,3:12:428:3:98:-4.42319,0,-34.3434	0/1:80:40,40:40:1402:40:1432:-104.835,0,-102.389	0/1:25:14,11:14:504:11:396:-28.4525,0,-38.1723	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:36:14,22:14:500:22:783:-59.9232,0,-34.4975	0/1:76:27,49:27:968:49:1752:-135.022,0,-64.5591	0/1:4:1,3:1:32:3:108:-8.8698,0,-1.99519	1/1:103:0,103:0:0:103:3684:-331.66,-31.0061,0	1/1:106:2,104:2:72:104:3669:-323.414,-25.0725,0	1/1:36:0,36:0:0:36:1296:-116.683,-10.8371,0	1/1:54:0,54:0:0:54:1915:-172.516,-16.2556,0	1/1:100:1,99:1:36:99:3522:-312.734,-26.5047,0	0/1:90:56,34:56:1990:34:1201:-81.2436,0,-152.266	1/1:25:1,24:1:36:24:860:-73.8863,-3.92748,0	1/1:51:0,51:0:0:51:1806:-162.079,-15.3525,0	1/1:48:0,48:0:0:48:1719:-154.961,-14.4494,0	0/1:22:5,17:5:180:17:611:-48.1656,0,-9.9294	1/1:68:0,68:0:0:68:2408:-216.431,-20.47,0	0/1:62:39,23:39:1396:23:815:-54.724,0,-107.269	1/1:94:0,94:0:0:94:3332:-299.789,-28.2968,0	0/1:123:89,34:89:3167:34:1207:-71.8961,0,-248.226	0/1:19:9,10:9:324:10:360:-26.991,0,-23.2237	1/1:149:1,148:1:36:148:5290:-471.107,-41.2552,0	0/1:17:10,7:10:356:7:252:-17.8877,0,-27.2604	0/1:55:39,16:39:1388:16:568:-34.8675,0,-108.659	1/1:32:0,32:0:0:32:1139:-102.582,-9.63296,0	1/1:67:0,67:0:0:67:2396:-215.744,-20.169,0	0/1:58:27,31:27:968:31:1065:-78.6804,0,-69.9772	1/1:63:0,63:0:0:63:2222:-200.182,-18.9649,0	0/1:42:21,21:21:752:21:756:-55.6436,0,-55.363	1/1:120:1,119:1:36:119:4237:-377.563,-32.5253,0	0/1:20:6,14:6:216:14:504:-39.3157,0,-13.7699	0/1:43:15,28:15:540:28:983:-75.4365,0,-35.984	1/1:83:0,83:0:0:83:2964:-266.467,-24.9855,0	0/1:31:17,14:17:608:14:500:-35.8983,0,-45.6907	0/1:65:33,32:33:1152:32:1136:-82.9001,0,-84.4149	0/1:54:27,27:27:964:27:960:-70.4451,0,-70.813	1/1:113:0,113:0:0:113:4005:-360.461,-34.0164,0	1/1:98:0,98:0:0:98:3481:-313.437,-29.5009,0
chr03	27761414	.	G	A	29972.2	PASS	AB=0.507046;ABP=4.4792;AC=51;AF=0.271277;AN=188;AO=1741;CIGAR=1X;DP=7274;DPB=7274;DPRA=0.815354;EPP=3654.38;EPPR=11523.3;GTI=3;LEN=1;MEANALT=1.03571;MQM=59.9891;MQMR=59.9882;NS=94;NUMALT=1;ODDS=1.65955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62328;QR=196626;RO=5527;RPL=1726;RPP=3654.38;RPPR=11523.3;RPR=15;RUN=1;SAF=0;SAP=3783.54;SAR=1741;SRF=0;SRP=12004.7;SRR=5527;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:11,12:11:392:12:432:-32.2975,0,-28.6964	0/1:163:71,91:71:2544:91:3260:-244.642,0,-180.232	0/1:109:59,50:59:2108:50:1796:-129.11,0,-157.177	0/0:141:139,2:139:4976:2:72:0,-35.6085,-441.152	0/1:51:18,33:18:648:33:1171:-90.3441,0,-43.2994	0/1:53:15,38:15:532:38:1360:-106.746,0,-32.2585	0/1:96:49,47:49:1738:47:1679:-122.498,0,-127.804	0/1:102:52,50:52:1834:50:1796:-131.217,0,-134.634	0/0:66:65,0:65:2315:0:0:0,-19.5669,-208.25	0/1:62:37,25:37:1292:25:900:-62.6572,0,-97.9143	0/1:44:23,21:23:828:21:752:-54.7609,0,-61.5988	0/1:59:30,29:30:1059:29:1035:-75.6937,0,-77.8597	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.648	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/1:76:43,33:43:1522:33:1188:-84.3503,0,-114.393	0/1:64:35,29:35:1238:29:1030:-73.7456,0,-92.4569	0/1:59:35,24:35:1231:24:864:-60.3218,0,-93.3325	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.803	0/1:30:18,12:18:648:12:432:-30.1903,0,-49.621	0/0:162:162,0:162:5757:0:0:0,-48.7669,-518.249	0/0:128:128,0:128:4541:0:0:0,-38.5318,-408.859	0/0:95:95,0:95:3362:0:0:0,-28.5978,-302.798	0/1:15:4,11:4:144:11:392:-31.1046,0,-8.79817	0/1:49:20,29:20:708:29:1040:-79.1639,0,-49.2667	0/0:40:39,1:39:1379:1:36:0,-8.44292,-120.81	0/1:264:123,141:123:4365:141:5053:-375.442,0,-313.554	0/0:108:108,0:108:3858:0:0:0,-32.5112,-347.415	0/1:42:22,20:22:792:20:707:-51.3113,0,-58.9624	0/0:159:159,0:159:5674:0:0:0,-47.8638,-510.78	0/0:84:84,0:84:2974:0:0:0,-25.2865,-267.894	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:10:7,3:7:252:3:108:-7.06011,0,-20.0187	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:179:179,0:179:6392:0:0:0,-53.8844,-575.371	0/1:187:114,73:114:4064:73:2624:-180.114,0,-309.651	0/1:83:30,53:30:1071:53:1892:-145.573,0,-71.7161	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:122:60,62:60:2114:62:2228:-164.058,0,-153.803	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:121:65,56:65:2311:56:1999:-143.758,0,-171.826	0/1:37:14,23:14:500:23:828:-63.706,0,-34.1981	0/0:68:68,0:68:2414:0:0:0,-20.47,-217.516	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:121:121,0:121:4266:0:0:0,-36.4246,-384.121	0/0:132:131,1:131:4675:1:36:0,-36.1377,-417.314	0/0:121:121,0:121:4320:0:0:0,-36.4246,-388.977	0/0:115:114,0:114:4048:0:0:0,-34.3174,-364.148	0/0:134:134,0:134:4727:0:0:0,-40.338,-425.593	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/1:90:55,35:55:1964:35:1256:-86.2526,0,-149.943	0/1:42:15,27:15:536:27:972:-75.1546,0,-35.9316	0/1:21:4,17:4:140:17:608:-48.7304,0,-6.62295	0/1:92:53,39:53:1892:39:1384:-97.1641,0,-142.864	0/1:10:3,7:3:100:7:252:-20.0187,0,-6.32014	0/1:6:2,4:2:63:4:144:-11.5074,0,-4.17697	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:74:36,38:36:1279:38:1364:-100.784,0,-93.1362	0/1:105:61,44:61:2184:44:1580:-110.883,0,-165.218	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:186:186,0:186:6629:0:0:0,-55.9916,-596.421	0/0:137:133,4:133:4746:4:144:0,-27.9275,-413.985	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:90:89,0:89:3172:0:0:0,-26.7917,-285.332	0/0:80:77,2:77:2724:2:72:0,-17.3045,-238.566	0/1:109:36,73:36:1267:73:2615:-202.785,0,-81.5197	0/0:31:30,1:30:1048:1:21:0,-7.23198,-92.5274	0/0:76:76,0:76:2694:0:0:0,-22.8783,-242.705	0/0:85:85,0:85:3031:0:0:0,-25.5875,-273.02	0/1:33:21,12:21:748:12:413:-27.5638,0,-57.7113	0/0:129:128,0:128:4557:0:0:0,-38.5318,-409.934	0/1:61:27,34:27:968:34:1224:-92.1042,0,-69.0745	0/0:72:72,0:72:2545:0:0:0,-21.6742,-229.3	0/1:173:79,94:79:2814:94:3360:-250.539,0,-201.421	0/1:73:45,28:45:1607:28:1001:-68.4299,0,-122.944	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:101:53,48:53:1891:48:1727:-125.311,0,-140.064	0/0:75:75,0:75:2669:0:0:0,-22.5772,-240.454	0/0:168:168,0:168:5964:0:0:0,-50.573,-536.871	0/1:120:64,56:64:2275:56:2012:-145.23,0,-168.888	0/0:50:50,0:50:1775:0:0:0,-15.0515,-160.032	0/1:83:47,36:47:1657:36:1275:-90.0668,0,-124.43	0/0:117:117,0:117:4169:0:0:0,-35.2205,-375.392	0/1:31:9,22:9:324:22:788:-61.9129,0,-20.1739	0/1:70:30,40:30:1076:40:1436:-108.466,0,-76.0808	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/1:36:13,23:13:468:23:828:-64.007,0,-31.6226	0/1:70:37,33:37:1320:33:1175:-84.9849,0,-98.0298	0/1:69:24,45:24:844:45:1607:-124.148,0,-55.5079	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:81:81,0:81:2882:0:0:0,-24.3834,-259.616
chr03	27777875	.	G	A	24450.3	PASS	AB=0.257114;ABP=5152.73;AC=45;AF=0.239362;AN=188;AO=2629;CIGAR=1X;DP=19465;DPB=19465;DPRA=1.0877;EPP=5711.81;EPPR=36559.7;GTI=8;LEN=1;MEANALT=1;MQM=40.7482;MQMR=59.5514;NS=94;NUMALT=1;ODDS=4.08273;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94204;QR=600364;RO=16835;RPL=0;RPP=5711.81;RPPR=36559.7;RPR=2629;RUN=1;SAF=2629;SAP=5711.81;SAR=0;SRF=16835;SRP=36559.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:102:78,24:78:2743:24:860:-44.4415,0,-216.318	0/1:460:350,110:350:12542:110:3941:-199.326,0,-989.302	0/1:163:122,41:122:4353:41:1461:-77.8887,0,-342.863	0/0:381:381,0:381:13496:0:0:0,-114.692,-1214	0/1:126:91,35:91:3260:35:1252:-68.1635,0,-255.629	0/1:119:75,44:75:2677:44:1584:-102.322,0,-205.329	0/1:177:119,58:119:4219:58:2084:-127.859,0,-326.6	0/1:289:208,81:208:7385:81:2908:-164.033,0,-577.548	0/0:215:214,1:214:7528:1:36:0,-61.2408,-673.651	0/1:243:207,36:207:7371:36:1292:-39.1104,0,-590.227	0/1:328:261,67:261:9342:67:2404:-109.422,0,-741.835	0/1:126:76,50:76:2736:50:1800:-117.707,0,-208.542	0/0:202:202,0:202:7241:0:0:0,-60.8081,-651.598	0/0:144:144,0:144:5097:0:0:0,-43.3483,-458.755	0/1:149:107,42:107:3810:42:1508:-87.4612,0,-298.237	0/1:126:83,43:83:2946:43:1544:-94.7601,0,-227.423	0/1:326:249,77:249:8916:77:2768:-140.762,0,-703.354	0/0:182:182,0:182:6487:0:0:0,-54.7875,-583.187	0/1:148:120,28:120:4301:28:1004:-43.209,0,-342.702	0/0:240:240,0:240:8608:0:0:0,-72.2472,-773.936	0/0:314:314,0:314:11121:0:0:0,-94.5234,-1000.02	0/0:127:127,0:127:4534:0:0:0,-38.2308,-408.219	0/1:258:200,58:200:7120:58:2088:-103.789,0,-562.057	0/1:340:282,58:282:10087:58:2088:-76.9782,0,-804.278	0/0:125:124,1:124:4460:1:21:0,-35.5617,-399.281	0/1:815:645,170:645:23049:170:6067:-288.294,0,-1827.09	0/0:331:330,1:330:11825:1:36:0,-96.0478,-1060.28	0/1:110:92,18:92:3274:18:648:-23.1949,0,-261.724	0/0:311:311,0:311:11153:0:0:0,-93.6203,-1003.18	0/0:198:197,1:197:7038:1:36:0,-56.1232,-629.688	0/0:164:164,0:164:5832:0:0:0,-49.3689,-524.872	0/0:115:115,0:115:4106:0:0:0,-34.6184,-369.695	0/1:89:79,10:79:2825:10:360:-4.69189,0,-227.642	0/0:112:109,3:109:3882:3:108:0,-23.9694,-339.488	0/0:210:210,0:210:7449:0:0:0,-63.2163,-670.265	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.8446	0/0:243:243,0:243:8678:0:0:0,-73.1503,-780.957	0/1:213:146,67:146:5169:67:2393:-141.806,0,-401.136	0/1:252:222,30:222:7946:30:1065:-16.6465,0,-638.983	0/1:28:24,4:24:845:4:144:-4.25256,0,-67.929	0/1:386:307,79:307:10979:79:2836:-128.592,0,-871.179	0/0:138:138,0:138:4933:0:0:0,-41.5421,-444.092	0/1:312:224,88:224:7964:88:3126:-174.798,0,-622.717	0/1:183:120,63:120:4288:63:2260:-142.314,0,-330.859	0/0:114:114,0:114:4073:0:0:0,-34.3174,-366.535	0/0:163:163,0:163:5811:0:0:0,-49.0679,-523.046	0/0:137:136,0:136:4850:0:0:0,-40.9401,-435.499	0/0:206:206,0:206:7305:0:0:0,-62.0122,-656.692	0/0:143:143,0:143:5101:0:0:0,-43.0473,-459.219	0/0:386:385,1:385:13716:1:36:0,-112.695,-1230.57	0/0:163:163,0:163:5833:0:0:0,-49.0679,-525.065	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:298:242,56:242:8609:56:1997:-83.2044,0,-684.836	0/0:177:161,16:161:5727:16:572:0,-2.41772,-464.655	0/1:55:40,15:40:1436:15:540:-30.7163,0,-112.97	0/1:195:117,78:117:4161:78:2804:-180.967,0,-315.831	0/1:140:125,15:125:4420:15:540:-5.49251,0,-355.781	0/0:72:71,1:71:2552:1:36:0,-18.138,-226.38	0/0:79:75,4:75:2688:4:144:0,-10.7799,-229.152	0/1:200:123,77:123:4416:77:2741:-175.969,0,-336.225	0/1:360:282,78:282:10072:78:2800:-136.272,0,-797.792	0/0:124:119,5:119:4231:5:180:0,-21.2153,-364.84	0/0:348:348,0:348:12373:0:0:0,-104.758,-1113.1	0/0:197:197,0:197:7065:0:0:0,-59.3029,-635.869	0/0:110:109,1:109:3916:1:36:0,-29.6588,-349.009	0/0:199:199,0:199:7125:0:0:0,-59.905,-641.212	0/0:233:227,6:227:8099:6:216:0,-50.7899,-709.377	0/1:151:56,95:56:1967:95:3397:-251.961,0,-131.786	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.817	0/0:111:111,0:111:3942:0:0:0,-33.4143,-354.921	0/0:147:147,0:147:5216:0:0:0,-44.2514,-469.291	0/1:95:73,22:73:2597:22:788:-39.284,0,-205.348	0/0:180:180,0:180:6359:0:0:0,-54.1854,-572.359	0/1:132:73,59:73:2590:59:2109:-142.895,0,-193.603	0/0:452:452,0:452:16087:0:0:0,-136.066,-1446.95	0/1:490:391,99:391:13995:99:3552:-161.778,0,-1110.55	0/1:189:121,68:121:4326:68:2444:-155.077,0,-332.572	0/0:164:164,0:164:5889:0:0:0,-49.3689,-529.988	0/1:78:65,13:65:2317:13:468:-16.9161,0,-185.182	0/1:342:250,92:250:8919:92:3308:-180.395,0,-699.58	0/0:154:154,0:154:5487:0:0:0,-46.3586,-492.616	0/0:206:206,0:206:7343:0:0:0,-62.0122,-660.594	0/1:336:261,75:261:9285:75:2692:-131.757,0,-734.306	0/0:207:207,0:207:7361:0:0:0,-62.3132,-662.447	0/1:342:254,88:254:9022:88:3156:-170.785,0,-708.608	0/0:181:177,4:177:6330:4:129:0,-42.9727,-558.234	0/1:84:43,41:43:1529:41:1468:-101.262,0,-112.488	0/1:141:94,47:94:3357:47:1692:-101.413,0,-259.883	0/0:179:179,0:179:6383:0:0:0,-53.8844,-574.519	0/1:136:89,47:89:3192:47:1692:-104.002,0,-246.473	0/1:288:225,63:225:8076:63:2268:-109.042,0,-639.795	0/1:130:55,75:55:1961:75:2677:-194.934,0,-137.62	0/0:385:385,0:385:13665:0:0:0,-115.897,-1228.71	0/0:299:299,0:299:10707:0:0:0,-90.008,-963.106
chr03	27777888	.	A	G	24396.1	PASS	AB=0.259136;ABP=4981.21;AC=46;AF=0.244681;AN=188;AO=2609;CIGAR=1X;DP=18797;DPB=18797;DPRA=1.32892;EPP=5668.38;EPPR=35150.5;GTI=9;LEN=1;MEANALT=1.02857;MQM=40.8616;MQMR=59.5699;NS=94;NUMALT=1;ODDS=1.13632;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93061;QR=573814;RO=16186;RPL=0;RPP=5668.38;RPPR=35150.5;RPR=2609;RUN=1;SAF=2609;SAP=5668.38;SAR=0;SRF=16186;SRP=35150.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:104:81,23:81:2877:23:824:-40.7495,0,-227.031	0/1:449:342,107:342:12098:107:3812:-192.314,0,-952.696	0/1:161:123,38:123:4358:38:1360:-69.6867,0,-343.905	0/0:362:361,1:361:12794:1:36:0,-105.47,-1147.45	0/1:122:87,35:87:3085:35:1248:-69.294,0,-241.091	0/1:119:74,45:74:2640:45:1593:-102.455,0,-202.008	0/1:172:115,57:115:4060:57:2018:-124.325,0,-313.803	0/1:278:200,78:200:7100:78:2766:-155.749,0,-554.956	0/0:213:212,1:212:7532:1:36:0,-60.6387,-674.194	0/1:232:196,36:196:6970:36:1292:-42.4325,0,-557.489	0/1:316:249,67:249:8865:67:2391:-112.677,0,-702.681	0/1:124:76,48:76:2724:48:1719:-111.995,0,-207.959	0/0:188:186,1:186:6633:1:36:0,-53.0575,-593.331	0/0:142:142,0:142:5081:0:0:0,-42.7463,-457.21	0/1:143:101,42:101:3574:42:1499:-88.5076,0,-278.815	0/1:122:80,42:80:2844:42:1500:-92.2081,0,-219.45	0/1:309:231,78:231:8194:78:2800:-148.779,0,-643.353	0/0:173:171,2:171:6076:2:72:0,-45.3567,-539.717	0/1:139:111,28:111:3896:28:1008:-46.2184,0,-308.986	0/0:235:234,1:234:8258:1:36:0,-67.2393,-739.005	0/0:302:302,0:302:10646:0:0:0,-90.9111,-957.065	0/0:124:124,0:124:4436:0:0:0,-37.3277,-399.402	0/1:248:193,55:193:6831:55:1952:-95.8554,0,-540.088	0/1:325:266,59:266:9467:59:2120:-84.4283,0,-753.192	0/0:116:116,0:116:4098:0:0:0,-34.9195,-368.924	0/1:778:612,166:612:21637:166:5931:-288.198,0,-1711.27	0/0:316:315,1:315:11105:1:36:0,-91.5323,-995.497	0/1:105:87,18:87:3108:18:640:-24.1235,0,-248.3	0/0:302:301,1:301:10648:1:27:0,-88.228,-955.145	0/0:191:189,2:189:6715:2:72:0,-50.9083,-597.602	0/0:158:158,0:158:5566:0:0:0,-47.5627,-500.959	0/0:110:110,0:110:3882:0:0:0,-33.1133,-349.558	0/1:85:76,9:76:2724:9:320:-2.4731,0,-219.783	0/0:106:103,3:103:3661:3:108:0,-22.1632,-319.573	0/0:192:192,0:192:6792:0:0:0,-57.7978,-610.795	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.606	0/0:233:233,0:233:8333:0:0:0,-70.14,-749.924	0/1:205:138,67:138:4868:67:2385:-144.033,0,-375.717	0/1:247:216,31:216:7700:31:1108:-21.8771,0,-618.469	0/1:26:22,4:22:754:4:140:-4.56015,0,-60.3373	0/1:373:293,80:293:10379:80:2868:-134.515,0,-821.206	0/0:130:130,0:130:4579:0:0:0,-39.1339,-412.209	0/1:297:210,87:210:7439:87:3120:-179.012,0,-579.847	0/1:181:118,63:118:4199:63:2268:-143.536,0,-323.528	0/0:112:112,0:112:3965:0:0:0,-33.7154,-356.802	0/0:160:160,0:160:5637:0:0:0,-48.1648,-507.416	0/0:128:128,0:128:4483:0:0:0,-38.5318,-403.631	0/0:196:195,1:195:6877:1:36:0,-55.4062,-614.609	0/0:134:134,0:134:4739:0:0:0,-40.338,-426.53	0/0:376:375,1:375:13220:1:36:0,-109.685,-1185.98	0/0:160:160,0:160:5702:0:0:0,-48.1648,-513.283	0/0:55:55,0:55:1952:0:0:0,-16.5566,-175.956	0/1:289:232,57:232:8214:57:2030:-88.9478,0,-651.931	0/1:167:151,16:151:5359:16:572:-0.620231,0,-432.089	0/1:54:39,15:39:1376:15:536:-30.7162,0,-107.87	0/1:189:113,76:113:3994:76:2703:-175.499,0,-302.619	0/1:135:120,15:120:4221:15:536:-6.68571,0,-339.231	0/0:70:68,2:68:2397:2:72:0,-14.2979,-209.196	0/0:76:72,4:72:2580:4:144:0,-9.87681,-219.429	0/1:195:119,76:119:4234:76:2724:-175.558,0,-321.356	0/1:354:277,77:277:9904:77:2734:-132.64,0,-784.577	0/0:123:118,5:118:4158:5:180:0,-20.9143,-358.28	0/0:333:331,2:331:11705:2:72:0,-93.6312,-1045.91	0/0:199:198,1:198:7028:1:36:0,-56.3093,-628.954	0/0:104:103,1:103:3631:1:36:0,-27.8526,-323.502	0/0:187:187,0:187:6600:0:0:0,-56.2926,-594.015	0/0:221:214,7:214:7542:7:252:0,-43.9403,-656.135	0/1:150:55,95:55:1892:95:3400:-252.319,0,-125.323	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.986	0/0:109:109,0:109:3870:0:0:0,-32.8123,-348.473	0/0:141:140,1:140:4946:1:36:0,-38.8507,-441.468	0/1:91:69,22:69:2429:22:767:-39.1071,0,-191.454	0/0:175:175,0:175:6233:0:0:0,-52.6802,-560.992	0/1:128:71,57:71:2536:57:2018:-136.807,0,-189.95	0/0:446:444,2:444:15754:2:72:0,-127.564,-1410.1	0/1:478:380,97:380:13460:97:3476:-158.74,0,-1065.56	0/1:183:116,67:116:4099:67:2404:-153.65,0,-313.959	0/0:159:158,1:158:5552:1:36:0,-44.3831,-496.258	0/1:75:62,13:62:2159:13:468:-17.8192,0,-171.939	0/1:331:240,91:240:8561:91:3245:-178.802,0,-670.688	0/0:152:149,3:149:5230:3:108:0,-36.0106,-459.862	0/0:201:200,1:200:7103:1:36:0,-56.9113,-635.498	0/1:320:247,73:247:8794:73:2597:-129.695,0,-695.069	0/0:203:203,0:203:7248:0:0:0,-61.1091,-652.315	0/1:325:242,83:242:8621:83:2928:-157.277,0,-677.664	0/0:180:176,4:176:6296:4:144:0,-41.3906,-553.898	0/1:79:39,40:39:1400:40:1436:-99.9767,0,-102.508	0/1:140:94,46:94:3355:46:1627:-97.0495,0,-260.006	0/0:179:179,0:179:6396:0:0:0,-53.8844,-575.688	0/1:130:84,46:84:3004:46:1623:-100.914,0,-231.371	0/1:280:218,62:218:7796:62:2216:-107.751,0,-616.912	0/1:126:53,73:53:1896:73:2584:-188.29,0,-132.789	0/0:370:370,0:370:13041:0:0:0,-111.381,-1170.96	0/0:292:292,0:292:10387:0:0:0,-87.9008,-934.512
chr03	27777920	.	C	T	37894.9	PASS	AB=0.192581;ABP=24124.3;AC=63;AF=0.335106;AN=188;AO=6480;CIGAR=1X;DP=42339;DPB=42339;DPRA=6.58719;EPP=14074.2;EPPR=77687.5;GTI=27;LEN=1;MEANALT=1.06452;MQM=59.8818;MQMR=58.3926;NS=94;NUMALT=1;ODDS=3.9372;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=230417;QR=1276156;RO=35851;RPL=15;RPP=13944.2;RPPR=392.243;RPR=6465;RUN=1;SAF=15;SAP=13944.2;SAR=6465;SRF=19212;SRP=403.999;SRR=16639;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:368:345,23:345:12255:23:816:0,-37.0532,-1025.94	0/0:737:689,48:689:24542:48:1716:0,-67.1335,-2036.75	0/1:484:431,53:431:15345:53:1880:-23.7796,0,-1230.32	0/1:1178:964,214:964:34398:214:7629:-331.936,0,-2739.77	0/0:253:239,14:239:8513:14:504:0,-30.4625,-713.468	0/1:180:163,17:163:5803:17:600:-0.143798,0,-463.671	0/1:481:409,72:409:14540:72:2560:-85.8053,0,-1157.8	0/1:664:572,92:572:20365:92:3281:-95.6258,0,-1621.81	0/1:655:532,123:532:18970:123:4332:-192.459,0,-1509.26	0/1:503:454,49:454:16128:49:1732:-4.47669,0,-1295.86	0/0:459:435,24:435:15475:24:852:0,-61.1724,-1308.09	0/1:368:317,51:317:11267:51:1820:-53.3022,0,-896.726	0/1:500:413,87:413:14721:87:3095:-128.157,0,-1174.09	0/1:265:201,63:201:7147:63:2227:-120.86,0,-563.278	0/1:311:275,36:275:9761:36:1288:-22.6033,0,-781.418	0/1:293:248,45:248:8801:45:1604:-56.4484,0,-697.585	0/0:407:396,11:396:14072:11:384:0,-87.6245,-1220.93	0/1:291:246,45:246:8713:45:1592:-55.8645,0,-696.055	0/0:284:266,18:266:9480:18:644:0,-27.2019,-792.106	0/1:618:517,101:517:18427:101:3593:-137.529,0,-1471.23	0/1:1111:914,197:914:32513:197:7010:-296.515,0,-2590.17	0/1:332:288,44:288:10206:44:1560:-40.7313,0,-818.497	0/0:639:599,40:599:21335:40:1428:0,-63.5548,-1784.04	0/0:612:585,27:585:20872:27:946:0,-98.7775,-1781.98	0/1:423:329,94:329:11755:94:3347:-174.109,0,-930.379	0/0:1652:1537,114:1537:54829:114:4053:0,-132.472,-4554.57	0/1:1039:788,251:788:28037:251:8952:-492.812,0,-2209.35	0/0:225:206,19:206:7271:19:668:0,-7.28608,-591.955	0/1:896:664,232:664:23680:232:8242:-471.866,0,-1860.63	0/1:440:331,108:331:11795:108:3828:-212.207,0,-927.712	0/1:365:297,68:297:10581:68:2432:-109.215,0,-842.216	0/0:146:141,5:141:5025:5:165:0,-28.7817,-437.203	0/0:163:158,5:158:5650:5:180:0,-32.5158,-490.494	0/0:122:119,3:119:4212:3:108:0,-26.6505,-368.488	0/0:238:226,12:226:8020:12:428:0,-32.7863,-682.782	0/1:49:36,13:36:1296:13:464:-27.347,0,-102.124	0/1:655:446,209:446:15849:209:7418:-470.496,0,-1228.88	0/0:370:341,29:341:12113:29:1012:0,-19.9905,-989.458	0/0:519:471,48:471:16719:48:1724:0,-0.793116,-1345.05	0/0:33:32,1:32:1139:1:36:0,-6.33616,-98.8218	0/0:844:776,68:776:27672:68:2436:0,-34.6189,-2257.94	0/1:222:196,26:196:6950:26:932:-17.3702,0,-558.659	0/1:711:615,96:615:21841:96:3390:-91.2855,0,-1737.06	0/0:308:280,25:280:9988:25:896:0,-11.2135,-811.927	0/1:230:177,52:177:6305:52:1864:-98.882,0,-498.341	0/1:485:397,88:397:14198:88:3120:-135.026,0,-1131.43	0/1:385:258,127:258:9180:127:4524:-291.388,0,-709.479	0/1:667:471,196:471:16802:196:7008:-429.997,0,-1310.98	0/1:352:268,84:268:9564:84:2983:-162.735,0,-753.946	0/1:803:678,125:678:24190:125:4455:-159.395,0,-1934.5	0/1:371:261,110:261:9333:110:3891:-238.692,0,-728.235	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:636:569,67:569:20260:67:2378:-22.8237,0,-1624.2	0/1:423:374,49:374:13328:49:1756:-30.9867,0,-1071.03	0/0:69:65,4:65:2328:4:136:0,-8.19553,-195.537	0/1:501:423,78:423:15085:78:2788:-100.345,0,-1193.89	0/0:333:316,17:316:11220:17:612:0,-44.8296,-952.545	0/1:95:86,9:86:3056:9:324:-0.9076,0,-246.592	0/0:112:110,2:110:3928:2:72:0,-26.8786,-346.611	0/1:377:334,43:334:11917:43:1521:-23.6937,0,-947.937	0/0:633:584,49:584:20793:49:1732:0,-34.3886,-1707.4	0/0:146:145,1:145:5184:1:36:0,-40.3521,-462.657	0/1:751:602,149:602:21465:149:5331:-253.77,0,-1704.94	0/1:540:394,146:394:14044:146:5183:-304.053,0,-1101.08	0/1:280:182,98:182:6497:98:3512:-231.997,0,-500.228	0/1:445:356,89:356:12687:89:3180:-152.466,0,-1007.65	0/1:504:409,95:409:14575:95:3387:-153.327,0,-1159.21	0/1:465:408,57:408:14506:57:2029:-42.9026,0,-1156.78	0/1:119:87,32:87:3073:32:1137:-66.7799,0,-240.965	0/1:256:178,78:178:6319:78:2762:-171.675,0,-491.715	0/1:232:181,50:181:6444:50:1762:-88.9648,0,-509.81	0/1:153:138,15:138:4864:15:536:-2.51723,0,-389.072	0/1:609:465,144:465:16560:144:5130:-278.507,0,-1306.7	0/1:336:271,65:271:9625:65:2315:-107.442,0,-758.377	0/1:1140:927,213:927:32973:213:7559:-337.177,0,-2622.34	0/0:879:817,62:817:29160:62:2201:0,-66.2502,-2414.46	0/1:404:330,74:330:11693:74:2644:-116.591,0,-922.91	0/1:333:240,93:240:8569:93:3276:-194.711,0,-670.941	0/1:117:106,11:106:3781:11:392:-0.399548,0,-303.948	0/0:656:611,45:611:21764:45:1596:0,-53.5454,-1799.86	0/1:394:253,141:253:8933:141:4988:-330.435,0,-683.948	0/1:596:453,143:453:16132:143:5095:-279.196,0,-1271.88	0/0:527:502,25:502:17855:25:884:0,-78.7644,-1518.44	0/1:459:376,83:376:13312:83:2963:-128.73,0,-1059.69	0/0:481:452,29:452:16067:29:1028:0,-51.9624,-1342.38	0/1:435:318,117:318:11297:117:4163:-243.907,0,-885.114	0/1:140:126,14:126:4466:14:491:-2.37692,0,-354.492	0/1:303:269,34:269:9498:34:1220:-18.8947,0,-756.649	0/1:410:343,67:343:12188:67:2333:-86.8073,0,-973.31	0/1:205:179,26:179:6362:26:932:-22.4877,0,-503.908	0/0:413:378,35:378:13463:35:1233:0,-13.0627,-1091.85	0/0:257:239,18:239:8504:18:636:0,-19.7967,-700.935	0/1:737:641,96:641:22774:96:3420:-86.1563,0,-1824.74	0/1:663:548,115:548:19492:115:4095:-169.108,0,-1553.84
chr03	27777938	.	C	T	132791	PASS	AB=0.289335;ABP=11348.8;AC=93;AF=0.494681;AN=188;AO=8517;CIGAR=1X;DP=29457;DPB=29457;DPRA=0;EPP=9319.67;EPPR=10588.5;GTI=17;LEN=1;MEANALT=1.12766;MQM=59.822;MQMR=59.8322;NS=94;NUMALT=1;ODDS=1.76559;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=304459;QR=745541;RO=20926;RPL=8442;RPP=17851.7;RPPR=16227.3;RPR=75;RUN=1;SAF=1161;SAP=9787.77;SAR=7356;SRF=1204;SRP=35587.1;SRR=19722;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:291:192,99:192:6854:99:3552:-232.258,0,-529.295	0/1:341:240,101:240:8582:101:3602:-221.7,0,-669.726	0/1:357:263,94:263:9378:94:3369:-195.929,0,-736.516	0/1:892:589,303:589:21007:303:10859:-708.461,0,-1621.58	0/1:133:95,38:95:3396:38:1353:-81.9886,0,-265.818	0/1:68:56,12:56:1999:12:432:-18.7512,0,-159.713	0/1:350:264,86:264:9431:86:3072:-171.349,0,-743.379	0/1:434:354,80:354:12627:80:2867:-127.617,0,-1005.61	0/1:562:390,172:390:13927:172:6127:-382.313,0,-1083.6	0/1:319:243,76:243:8665:76:2724:-149.374,0,-683.532	0/1:171:118,53:118:4215:53:1900:-119.802,0,-328.053	0/1:302:235,67:235:8390:67:2374:-123.002,0,-664.193	0/1:387:289,98:289:10286:98:3511:-199.701,0,-809.167	0/1:143:111,31:111:3955:31:1104:-56.5647,0,-313.036	0/1:196:153,43:153:5428:43:1544:-80.2512,0,-429.651	0/1:199:156,43:156:5552:43:1539:-78.8905,0,-439.898	0/1:103:64,39:64:2304:39:1404:-95.6532,0,-176.614	0/1:149:111,38:111:3952:38:1368:-78.5674,0,-311.018	0/1:169:123,46:123:4378:46:1656:-98.4543,0,-343.318	0/1:423:278,145:278:9912:145:5204:-341.161,0,-764.559	0/1:995:661,334:661:23579:334:11912:-772.402,0,-1821.96	0/1:345:210,135:210:7443:135:4812:-329.32,0,-566.05	0/1:451:307,142:307:10930:142:5072:-321.103,0,-848.067	0/1:316:215,101:215:7671:101:3582:-227.401,0,-595.263	0/1:355:230,125:230:8197:125:4476:-296.142,0,-630.878	0/1:1675:1077,597:1077:38133:597:21275:-1409.57,0,-2918.13	0/1:865:623,241:623:22246:241:8624:-515.687,0,-1741.11	0/1:157:121,36:121:4301:36:1292:-69.3221,0,-340.007	0/1:950:617,332:617:21907:332:11846:-779.809,0,-1684.88	0/1:251:185,66:185:6591:66:2365:-137.231,0,-517.713	0/1:220:154,66:154:5468:66:2360:-146.43,0,-425.977	0/1:33:25,8:25:892:8:288:-16.3334,0,-70.6657	0/1:95:70,25:70:2512:25:900:-52.7232,0,-197.734	0/1:14:9,5:9:324:5:176:-11.9682,0,-25.2914	0/1:39:26,13:26:927:13:468:-30.7195,0,-72.0072	0/0:24:23,1:23:820:1:36:0,-3.62644,-70.5136	0/1:748:528,218:528:18672:218:7761:-473.562,0,-1455.15	0/1:190:133,57:133:4752:57:2036:-126.317,0,-370.643	0/1:326:243,83:243:8688:83:2984:-170.62,0,-683.738	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42806	0/1:521:359,162:359:12777:162:5786:-363.528,0,-992.924	0/1:105:72,33:72:2548:33:1188:-75.6204,0,-197.961	0/1:444:353,91:353:12606:91:3247:-158.736,0,-1000.09	0/1:157:118,39:118:4214:39:1385:-77.6602,0,-332.176	0/1:153:124,28:124:4427:28:1000:-44.1991,0,-352.486	0/1:563:356,206:356:12692:206:7364:-492.58,0,-972.569	0/1:276:213,63:213:7600:63:2260:-120.578,0,-600.91	0/1:500:371,128:371:13231:128:4542:-258.327,0,-1040.03	0/1:239:164,75:164:5868:75:2679:-169.301,0,-456.285	0/1:476:330,146:330:11800:146:5228:-327.365,0,-918.57	0/1:387:262,125:262:9251:125:4456:-284.705,0,-716.029	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:402:278,124:278:9955:124:4448:-279.468,0,-774.874	0/1:431:287,144:287:10158:144:5148:-333.702,0,-783.838	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:342:280,61:280:9984:61:2194:-94.6695,0,-795.474	0/1:230:174,56:174:6220:56:1985:-109.686,0,-490.63	0/1:88:53,35:53:1888:35:1232:-84.6772,0,-143.521	0/1:105:65,40:65:2311:40:1436:-97.9195,0,-176.521	0/1:206:164,42:164:5867:42:1501:-73.1004,0,-466.129	0/1:333:248,85:248:8876:85:3044:-173.947,0,-698.579	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	0/1:779:485,294:485:17182:294:10476:-708.074,0,-1311.45	0/1:388:287,101:287:10276:101:3624:-209.52,0,-807.921	0/1:190:149,41:149:5325:41:1468:-75.2204,0,-422.187	0/1:288:207,81:207:7363:81:2912:-175.618,0,-576.025	0/1:316:209,106:209:7480:106:3789:-246.023,0,-578.059	0/1:352:306,46:306:10938:46:1648:-42.646,0,-878.356	0/1:73:59,14:59:2085:14:504:-23.7229,0,-165.914	0/1:177:140,37:140:5012:37:1324:-66.1798,0,-397.56	0/1:235:142,93:142:4985:93:3320:-228.131,0,-378.059	0/1:75:53,22:53:1908:22:788:-48.6675,0,-149.42	0/1:484:351,133:351:12534:133:4756:-282.498,0,-982.182	0/1:235:200,35:200:7172:35:1256:-42.6032,0,-574.783	0/1:780:526,254:526:18664:254:9053:-579.193,0,-1444.55	0/1:450:299,151:299:10673:151:5422:-352.644,0,-825.018	0/1:231:186,45:186:6634:45:1616:-76.1839,0,-527.603	0/1:194:155,39:155:5547:39:1388:-66.8158,0,-440.954	0/1:48:37,11:37:1328:11:396:-21.5333,0,-105.373	0/1:374:265,109:265:9474:109:3912:-239.558,0,-739.955	0/1:262:209,53:209:7464:53:1904:-92.7572,0,-592.929	0/1:473:341,132:341:12156:132:4724:-282.89,0,-951.5	0/1:270:197,73:197:7019:73:2619:-154.665,0,-550.493	0/1:310:216,94:216:7668:94:3360:-209.297,0,-596.839	0/1:205:163,42:163:5814:42:1504:-73.5729,0,-461.663	0/1:315:249,66:249:8859:66:2372:-118.871,0,-702.476	0/1:74:63,11:63:2243:11:396:-13.7065,0,-179.857	0/1:200:149,50:149:5319:50:1800:-102.009,0,-418.58	0/1:289:207,82:207:7384:82:2925:-176.486,0,-577.609	0/1:93:74,19:74:2619:19:680:-33.5334,0,-207.904	0/1:158:121,37:121:4331:37:1332:-72.6196,0,-342.386	0/1:151:126,25:126:4502:25:896:-35.5048,0,-359.892	0/1:423:289,134:289:10268:134:4782:-303.153,0,-796.717	0/1:514:387,127:387:13779:127:4556:-255.44,0,-1085.16
chr03	27777987	.	T	G	7686.67	PASS	AB=0.147096;ABP=29316.4;AC=81;AF=0.430851;AN=188;AO=4071;CIGAR=1X;DP=28311;DPB=28311;DPRA=29.9534;EPP=8843.07;EPPR=52193;GTI=55;LEN=1;MEANALT=1.13483;MQM=59.8489;MQMR=57.5245;NS=94;NUMALT=1;ODDS=0.729752;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145498;QR=868901;RO=24226;RPL=0;RPP=8843.07;RPPR=52193;RPR=4071;RUN=1;SAF=4071;SAP=8843.07;SAR=0;SRF=24226;SRP=52609.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:167:129,38:129:4616:38:1341:-70.716,0,-364.042	0/1:810:672,138:672:24085:138:4930:-199.985,0,-1916.89	0/1:312:270,42:270:9683:42:1503:-41.6426,0,-775.322	0/1:608:516,92:516:18480:92:3312:-115.253,0,-1472.65	0/1:176:159,17:159:5704:17:612:-2.43216,0,-459.844	0/1:129:108,21:108:3884:21:752:-29.17,0,-309.746	0/1:300:264,36:264:9443:36:1288:-25.9146,0,-757.715	0/1:565:503,62:503:18040:62:2209:-28.8329,0,-1448.15	0/1:445:342,102:342:12217:102:3584:-188.723,0,-961.849	0/1:436:377,59:377:13505:59:2120:-59.797,0,-1079.51	0/1:351:316,35:316:11359:35:1241:-6.30257,0,-913.075	0/1:232:200,31:200:7158:31:1104:-29.8113,0,-572.076	0/1:365:304,61:304:10894:61:2184:-86.7601,0,-868.045	0/1:226:197,29:197:7080:29:1040:-25.8591,0,-568.807	0/1:231:203,28:203:7296:28:1003:-21.0477,0,-584.803	0/1:196:168,28:168:6023:28:1004:-31.674,0,-482.682	0/1:511:436,75:436:15676:75:2696:-89.0575,0,-1252.18	0/1:379:322,56:322:11559:56:2004:-66.4844,0,-923.119	0/1:179:152,27:152:5459:27:968:-33.553,0,-436.935	0/1:419:354,65:354:12721:65:2332:-84.008,0,-1015.22	0/1:555:472,83:472:16924:83:2965:-99.9993,0,-1351.88	0/1:209:167,42:167:6004:42:1486:-71.1168,0,-477.048	0/1:330:295,35:295:10537:35:1241:-12.6517,0,-846.467	0/1:488:421,67:421:15120:67:2382:-67.7317,0,-1210.22	0/1:274:234,40:234:8381:40:1432:-46.6954,0,-670.667	0/1:935:788,146:788:28237:146:5164:-183.275,0,-2254.88	0/1:802:674,128:674:24157:128:4580:-170.934,0,-1926.01	0/1:215:172,43:172:6188:43:1544:-74.5316,0,-491.855	0/1:445:379,65:379:13574:65:2340:-76.8418,0,-1086.45	0/0:213:195,18:195:6989:18:648:0,-5.46751,-569.857	0/1:279:238,41:238:8529:41:1461:-47.7963,0,-681.355	0/0:13:12,1:12:432:1:36:0,-0.315115,-35.5801	0/1:33:24,9:24:864:9:324:-19.5719,0,-68.1059	0/0:34:33,1:33:1180:1:36:0,-6.63674,-102.751	0/1:29:25,4:25:892:4:144:-4.58375,0,-71.7524	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3008	0/1:471:402,69:402:14439:69:2480:-81.6679,0,-1155.61	0/1:229:195,34:195:6992:34:1224:-41.5312,0,-559.539	0/1:320:276,44:276:9888:44:1584:-46.5219,0,-790.45	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:571:495,75:495:17746:75:2677:-69.2235,0,-1422.69	0/1:165:143,22:143:5144:22:792:-21.9348,0,-412.452	0/1:358:309,48:309:11092:48:1716:-47.0226,0,-888.749	0/1:259:216,43:216:7760:43:1529:-59.9328,0,-618.781	0/1:198:175,23:175:6274:23:828:-15.2402,0,-504.39	0/1:255:208,47:208:7476:47:1665:-73.2667,0,-595.226	0/1:273:234,39:234:8420:39:1398:-43.9377,0,-673.954	0/1:380:331,49:331:11892:49:1756:-43.9326,0,-952.871	0/1:210:176,34:176:6308:34:1203:-45.3594,0,-502.796	0/1:590:504,86:504:18090:86:3062:-98.1924,0,-1446.26	0/1:217:181,36:181:6489:36:1277:-49.9076,0,-518.634	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.6599	0/1:714:601,113:601:21575:113:4056:-150.132,0,-1721.33	0/0:132:121,11:121:4336:11:385:0,-4.75267,-355.307	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:254:232,22:232:8298:22:792:0,-4.85595,-674.286	0/0:145:135,10:135:4833:10:360:0,-10.9066,-401.483	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:13:10,3:10:360:3:93:-4.76334,0,-28.8242	0/0:195:183,12:183:6545:12:427:0,-19.9326,-548.1	0/1:508:426,82:426:15304:82:2928:-110.83,0,-1216.74	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.1939	0/1:523:444,79:444:15941:79:2808:-94.7426,0,-1275.99	0/1:382:330,52:330:11796:52:1856:-52.3263,0,-944.421	0/1:171:147,24:147:5269:24:864:-26.6064,0,-422.158	0/1:212:186,26:186:6629:26:932:-20.3805,0,-529.821	0/1:325:280,45:280:10049:45:1604:-46.7654,0,-802.915	0/1:117:102,15:102:3655:15:536:-13.3543,0,-293.398	0/1:108:96,11:96:3448:11:396:-3.55006,0,-276.895	0/1:196:169,27:169:6049:27:966:-28.255,0,-484.98	0/1:302:262,40:262:9389:40:1440:-38.976,0,-753.657	0/1:56:45,11:45:1616:11:381:-17.763,0,-127.635	0/1:238:207,28:207:7370:28:1004:-19.5741,0,-590.923	0/0:174:164,10:164:5884:10:360:0,-19.6349,-495.795	0/1:656:571,85:571:20467:85:3006:-73.2945,0,-1640.89	0/1:565:455,110:455:16317:110:3952:-184.852,0,-1293.49	0/1:296:262,34:262:9396:34:1205:-19.649,0,-754.361	0/1:377:327,50:327:11735:50:1784:-47.3368,0,-940.411	0/1:25:21,4:21:752:4:144:-5.78787,0,-60.4443	0/1:577:495,82:495:17785:82:2933:-90.5006,0,-1424	0/1:316:277,39:277:9919:39:1404:-31.5054,0,-794.825	0/1:360:306,53:306:10996:53:1902:-63.0256,0,-879.077	0/1:493:435,58:435:15628:58:2088:-39.782,0,-1250.93	0/1:336:293,43:293:10536:43:1544:-38.0786,0,-843.425	0/1:564:477,87:477:17116:87:3124:-111.556,0,-1359.84	0/1:402:356,46:356:12804:46:1644:-27.119,0,-1026.64	0/1:121:91,29:91:3263:29:1040:-57.4104,0,-256.415	0/1:228:187,41:187:6712:41:1472:-64.1398,0,-534.16	0/1:340:300,40:300:10754:40:1440:-27.5475,0,-861.469	0/1:131:114,16:114:4091:16:572:-12.329,0,-328.5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chr03	27777993	.	G	A	247137	PASS	AB=0.315736;ABP=12097.2;AC=94;AF=0.5;AN=188;AO=12948;CIGAR=1X;DP=41009;DPB=41009;DPRA=0;EPP=5856.74;EPPR=1196.53;GTI=2;LEN=1;MEANALT=2.09574;MQM=53.0099;MQMR=59.8924;NS=94;NUMALT=1;ODDS=21.3551;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=461916;QR=823429;RO=23110;RPL=38;RPP=27790.1;RPPR=49778.3;RPR=12910;RUN=1;SAF=9466;SAP=6008.31;SAR=3482;SRF=13384;SRP=1260.32;SRR=9726;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:355:224,110:224:7988:110:3924:-250.633,0,-617.909	0/1:962:487,347:487:17384:347:12360:-854.913,0,-1312.65	0/1:478:294,134:294:10492:134:4763:-297.334,0,-814.749	0/1:883:466,303:466:16585:303:10769:-728.295,0,-1260.47	0/1:251:154,81:154:5462:81:2885:-187.534,0,-420.54	0/1:169:87,58:87:3060:58:2075:-142.106,0,-231.617	0/1:407:236,138:236:8420:138:4939:-329.022,0,-644.295	0/1:687:393,203:393:14047:203:7213:-466.455,0,-1083.12	0/1:732:419,249:419:14920:249:8810:-587.131,0,-1141.07	0/1:602:325,222:325:11540:222:7906:-538.844,0,-871.986	0/1:469:241,119:241:8556:119:4264:-271.353,0,-661.309	0/1:498:337,119:337:11936:119:4264:-243.986,0,-936.372	0/1:664:393,206:393:13964:206:7347:-476.105,0,-1075.68	0/1:305:174,78:174:6207:78:2788:-174.037,0,-482.501	0/1:384:222,116:222:7917:116:4156:-268.964,0,-610.414	0/1:332:222,75:222:7928:75:2683:-151.026,0,-623.755	0/1:592:291,198:291:10393:198:7065:-484.323,0,-787.658	0/1:466:242,154:242:8626:154:5497:-373.165,0,-656.771	0/1:288:147,110:147:5272:110:3928:-272.625,0,-396.852	0/1:569:357,173:357:12733:173:6162:-390.911,0,-985.845	0/1:868:505,274:505:17965:274:9762:-638.623,0,-1379.85	0/1:308:176,97:176:6272:97:3475:-229.677,0,-482.032	0/1:496:258,177:258:9156:177:6300:-432.763,0,-692.661	0/1:690:342,292:342:12169:292:10419:-741.525,0,-903.809	0/1:443:265,143:265:9467:143:5089:-332.938,0,-728.809	0/1:1317:726,438:726:25797:438:15636:-1051.34,0,-1969.74	0/1:1210:652,431:652:23250:431:15387:-1051.66,0,-1765.5	0/1:354:188,119:188:6706:119:4268:-290.088,0,-510.837	0/1:607:366,181:366:13077:181:6468:-415.047,0,-1011.69	0/1:264:138,88:138:4931:88:3136:-212.763,0,-375.552	0/1:363:213,102:213:7558:102:3638:-229.855,0,-585.078	0/1:30:17,12:17:603:12:424:-29.3066,0,-45.5101	0/1:62:32,20:32:1137:20:716:-48.6122,0,-86.6247	0/1:40:16,16:16:572:16:576:-42.0235,0,-41.8215	0/1:42:22,13:22:777:13:464:-31.0466,0,-59.3648	0/1:30:12,9:12:408:9:320:-22.2994,0,-30.3712	0/1:860:569,201:569:20262:201:7211:-414.497,0,-1590.78	0/1:294:175,88:175:6267:88:3136:-202.018,0,-484.389	0/1:463:233,151:233:8306:151:5369:-364.14,0,-631.592	0/1:10:6,2:6:208:2:72:-4.05775,0,-16.2934	0/1:714:376,255:376:13442:255:9105:-625.687,0,-1019.24	0/1:263:126,103:126:4485:103:3655:-257.308,0,-334.528	0/1:517:327,158:327:11662:158:5648:-360.007,0,-902.423	0/1:362:217,103:217:7753:103:3696:-234.068,0,-601.099	0/1:297:183,81:183:6522:81:2865:-177.26,0,-507.234	0/1:430:257,136:257:9167:136:4852:-317.086,0,-706.295	0/1:416:263,116:263:9387:116:4122:-255.092,0,-730.342	0/1:473:270,141:270:9644:141:4979:-321.24,0,-743.819	0/1:322:197,91:197:7003:91:3238:-201.767,0,-543.273	0/1:717:345,258:345:12344:258:9193:-641.29,0,-928.91	0/1:333:203,105:203:7216:105:3756:-244.64,0,-556.42	0/1:37:22,12:22:769:12:424:-27.5172,0,-58.935	0/1:954:526,282:526:18776:282:10059:-656.16,0,-1445.17	0/1:193:98,62:98:3488:62:2224:-151.67,0,-265.6	0/1:23:16,5:16:576:5:180:-9.87061,0,-45.4935	0/1:361:211,95:211:7433:95:3404:-212.507,0,-576.548	0/1:249:125,86:125:4414:86:3056:-210.072,0,-333.548	0/1:11:7,3:7:244:3:108:-6.68831,0,-18.9307	0/1:22:15,7:15:532:7:248:-16.0182,0,-41.5904	0/1:267:148,80:148:5245:80:2864:-186.653,0,-403.182	0/1:720:384,210:384:13703:210:7497:-488.082,0,-1053.83	0/1:29:14,13:14:500:13:464:-33.4357,0,-36.8489	0/1:661:336,226:336:12020:226:8104:-558.584,0,-911.338	0/1:547:352,131:352:12502:131:4685:-273.47,0,-979.263	0/1:226:122,72:122:4355:72:2564:-171.587,0,-333.367	0/1:311:154,106:154:5516:106:3769:-257.921,0,-417.93	0/1:498:291,148:291:10319:148:5288:-340.451,0,-795.435	0/1:214:161,44:161:5715:44:1584:-80.0678,0,-452.393	0/1:160:85,50:85:3017:50:1773:-118.013,0,-230.768	0/1:249:141,87:141:5039:87:3108:-209.856,0,-384.667	0/1:385:231,107:231:8248:107:3808:-240.051,0,-640.205	0/1:98:55,35:55:1950:35:1248:-83.7962,0,-148.309	0/1:360:190,113:190:6781:113:4034:-269.15,0,-518.795	0/1:285:163,101:163:5823:101:3589:-241.904,0,-444.33	0/1:923:469,325:469:16737:325:11621:-802.417,0,-1266.43	0/1:727:385,227:385:13699:227:8121:-541.435,0,-1047.39	0/1:384:222,123:222:7893:123:4380:-287.668,0,-606.157	0/1:498:253,174:253:9030:174:6224:-428.775,0,-683.764	0/1:52:28,19:28:981:19:680:-46.9135,0,-74.0943	0/1:761:393,255:393:14006:255:9107:-620.467,0,-1064.83	0/1:409:231,141:231:8274:141:4987:-333.874,0,-632.279	0/1:593:365,174:365:12979:174:6215:-393.895,0,-1005.32	0/1:685:356,240:356:12698:240:8567:-583.038,0,-962.832	0/1:567:311,173:311:11044:173:6174:-405.163,0,-847.792	0/1:730:420,229:420:15039:229:8157:-529.832,0,-1156.74	0/1:643:397,171:397:14159:171:6140:-374.508,0,-1102.46	0/1:159:95,44:95:3388:44:1572:-98.1749,0,-262.912	0/1:382:242,107:242:8663:107:3802:-234.748,0,-674.228	0/1:585:313,199:313:11125:199:7084:-479.619,0,-846.533	0/1:208:125,56:125:4451:56:1982:-123.139,0,-345.907	0/1:341:192,86:192:6836:86:3071:-191.783,0,-531.252	0/1:273:199,58:199:7092:58:2084:-108.624,0,-559.168	0/1:577:305,199:305:10909:199:7112:-483.105,0,-829.605	0/1:964:576,279:576:20518:279:9981:-634.572,0,-1588.33
chr03	27778025	.	G	T	69609.4	PASS	AB=0.197399;ABP=23911.9;AC=80;AF=0.425532;AN=188;AO=6377;CIGAR=1X;DP=35841;DPB=35841;DPRA=0;EPP=409.808;EPPR=5120.77;GTI=27;LEN=1;MEANALT=1.01064;MQM=59.8444;MQMR=56.9218;NS=94;NUMALT=1;ODDS=0.222463;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225080;QR=1045382;RO=29463;RPL=6334;RPP=13479.5;RPPR=62727.8;RPR=43;RUN=1;SAF=3692;SAP=348.311;SAR=2685;SRF=18753;SRP=4770.76;SRR=10710;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:336:318,18:318:11280:18:640:0,-43.2344,-955.305	0/0:815:755,60:755:26808:60:2122:0,-54.1381,-2214.68	0/1:429:358,71:358:12727:71:2487:-94.9381,0,-1013.37	0/1:755:626,129:626:22225:129:4535:-180.188,0,-1765.21	0/1:232:195,37:195:6902:37:1290:-46.5509,0,-550.429	0/0:144:135,9:135:4777:9:320:0,-14.206,-400.289	0/1:367:315,52:315:11174:52:1860:-57.2016,0,-892.468	0/1:585:484,101:484:17133:101:3581:-145.863,0,-1362.17	0/1:670:564,106:564:19922:106:3744:-135.469,0,-1586.47	0/1:541:488,53:488:17329:53:1884:-6.98141,0,-1389.63	0/1:356:319,37:319:11347:37:1324:-12.2954,0,-910.58	0/1:454:377,77:377:13336:77:2706:-107.057,0,-1061.22	0/1:614:483,131:483:17186:131:4630:-232.017,0,-1357.62	0/1:253:171,82:171:6063:82:2932:-187.923,0,-468.566	0/1:335:284,51:284:10139:51:1763:-58.1049,0,-809.295	0/1:289:232,57:232:8200:57:2028:-95.7951,0,-650.07	0/0:490:456,34:456:16133:34:1212:0,-38.1184,-1338.37	0/1:396:320,76:320:11340:76:2657:-120.169,0,-898.558	0/0:260:244,15:244:8680:15:532:0,-30.0992,-729.502	0/1:523:375,148:375:13351:148:5243:-314.571,0,-1040.55	0/1:773:610,163:610:21633:163:5711:-281.277,0,-1709.76	0/1:275:221,54:221:7880:54:1893:-87.8614,0,-626.04	0/1:449:399,50:399:14103:50:1771:-24.5063,0,-1130.77	0/1:635:555,80:555:19709:80:2844:-65.0256,0,-1576.99	0/1:414:340,74:340:12076:74:2615:-110.972,0,-959.74	0/0:1152:1050,102:1050:37289:102:3613:0,-21.4186,-3025.43	0/1:1071:882,189:882:31337:189:6677:-278.384,0,-2491.49	0/1:306:276,30:276:9828:30:1064:-3.95188,0,-791.112	0/1:539:388,151:388:13768:151:5297:-314.585,0,-1075.22	0/1:225:171,54:171:6041:54:1936:-106.785,0,-474.548	0/1:314:211,103:211:7530:103:3630:-232.38,0,-581.064	0/1:29:26,3:26:932:3:95:-0.134343,0,-75.3624	0/1:51:45,6:45:1584:6:201:-3.06451,0,-127.357	0/0:33:32,1:32:1122:1:36:0,-6.33571,-97.5505	0/1:37:31,6:31:1094:6:212:-8.28669,0,-87.4726	0/1:20:13,7:13:468:7:248:-16.6436,0,-36.1713	0/1:779:519,260:519:18392:260:9201:-593.514,0,-1418.15	0/1:263:235,28:235:8302:28:989:-10.1511,0,-666.996	0/0:382:355,27:355:12601:27:943:0,-29.8148,-1047	0/1:8:6,2:6:208:2:68:-4.04947,0,-16.6432	0/0:628:575,53:575:20444:53:1869:0,-20.5603,-1667.4	0/1:234:191,43:191:6787:43:1523:-66.9213,0,-537.842	0/1:475:410,65:410:14506:65:2324:-66.4203,0,-1160.25	0/1:320:276,44:276:9726:44:1572:-45.442,0,-777.465	0/1:261:175,86:175:6150:86:3055:-196.592,0,-474.195	0/1:396:336,60:336:11943:60:2109:-70.867,0,-954.437	0/1:375:270,105:270:9595:105:3693:-219.643,0,-749.575	0/1:412:290,122:290:10260:122:4281:-261.445,0,-796.526	0/1:282:187,95:187:6652:95:3319:-214.04,0,-511.134	0/1:606:520,86:520:18374:86:3072:-94.285,0,-1467.19	0/1:313:230,83:230:8206:83:2913:-168.184,0,-643.579	0/1:34:22,12:22:788:12:428:-28.6238,0,-60.5999	0/0:800:728,72:728:26038:72:2543:0,-11.7337,-2108.55	0/1:160:138,22:138:4897:22:772:-21.6365,0,-392.493	0/1:23:18,5:18:635:5:180:-9.62837,0,-50.5533	0/1:302:241,61:241:8540:61:2106:-98.8748,0,-676.211	0/1:203:179,24:179:6381:24:844:-15.1698,0,-512.071	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5416	0/1:22:19,3:19:653:3:108:-3.45251,0,-52.4484	0/1:230:194,36:194:6880:36:1265:-44.9137,0,-547.516	0/1:595:532,63:532:18877:63:2244:-23.111,0,-1513.22	0/0:26:25,1:25:896:1:36:0,-4.2285,-77.188	0/1:547:438,109:438:15606:109:3813:-178.699,0,-1238.43	0/1:481:342,139:342:12167:139:4931:-299.148,0,-947.975	0/1:191:138,53:138:4910:53:1880:-111.976,0,-383.524	0/1:246:202,44:202:7119:44:1549:-65.6178,0,-564.093	0/1:439:308,131:308:10940:131:4612:-282.969,0,-849.268	0/1:203:176,27:176:6252:27:945:-24.2547,0,-501.063	0/1:138:90,48:90:3177:48:1712:-112.824,0,-243.783	0/1:233:157,76:157:5550:76:2681:-171.387,0,-428.129	0/1:339:237,102:237:8320:102:3605:-222.597,0,-645.981	0/0:89:81,8:81:2879:8:280:0,-1.25237,-232.435	0/1:300:245,55:245:8671:55:1898:-80.7857,0,-688.55	0/1:260:226,34:226:8062:34:1187:-28.8646,0,-645.693	0/1:788:650,138:650:23106:138:4887:-202.772,0,-1837.41	0/1:605:542,63:542:19204:63:2236:-19.3813,0,-1540.58	0/1:342:286,56:286:10120:56:1984:-75.8751,0,-805.481	0/1:422:295,127:295:10481:127:4510:-279.026,0,-814.32	0/0:47:44,3:44:1555:3:104:0,-4.4456,-130.438	0/1:641:558,83:558:19868:83:2917:-69.8049,0,-1590.95	0/1:376:260,116:260:9265:116:4077:-253.843,0,-716.573	0/1:528:372,156:372:13186:156:5441:-330.882,0,-1024.53	0/0:578:538,40:538:19107:40:1410:0,-46.7996,-1585.24	0/1:482:389,93:389:13715:93:3301:-152.213,0,-1084.87	0/1:630:564,66:564:19911:66:2356:-22.6486,0,-1595.06	0/1:562:374,188:374:13196:188:6583:-422.901,0,-1013.7	0/1:141:126,15:126:4472:15:532:-5.57685,0,-358.651	0/1:338:282,56:282:10000:56:1957:-74.656,0,-796.022	0/1:513:413,100:413:14579:100:3552:-165.453,0,-1153.2	0/1:177:143,34:143:5089:34:1185:-53.6704,0,-404.02	0/1:280:243,37:243:8615:37:1320:-34.8136,0,-690.215	0/1:255:217,38:217:7756:38:1348:-44.8576,0,-618.444	0/1:507:420,87:420:14886:87:3104:-126.966,0,-1181.87	0/1:858:679,179:679:24153:179:6357:-313.927,0,-1909.47
chr03	27778030	.	A	T	2570.02	PASS	AB=0.137038;ABP=36718.8;AC=79;AF=0.420213;AN=188;AO=4693;CIGAR=1X;DP=35863;DPB=35863;DPRA=28.8035;EPP=10167.7;EPPR=1405.6;GTI=50;LEN=1;MEANALT=1.13187;MQM=48.7848;MQMR=58.722;NS=94;NUMALT=1;ODDS=591.768;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164525;QR=1100593;RO=31156;RPL=4693;RPP=10193.7;RPPR=67275.8;RPR=0;RUN=1;SAF=4690;SAP=10167.7;SAR=3;SRF=17777;SRP=1351.11;SRR=13379;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:335:314,21:314:11048:21:731:0,-35.8722,-928.382	0/1:822:691,131:691:24397:131:4603:-161.72,0,-1946.35	0/1:435:388,46:388:13651:46:1563:-8.63171,0,-1096.17	0/1:757:647,110:647:22930:110:3844:-112.507,0,-1833.07	0/1:228:196,31:196:6930:31:1060:-26.5173,0,-554.572	0/1:140:120,20:120:4194:20:720:-22.587,0,-333.637	0/1:373:321,52:321:11297:52:1831:-51.0697,0,-903.157	0/1:585:506,79:506:17756:79:2761:-70.0789,0,-1419.24	0/1:675:597,78:597:21066:78:2723:-38.8668,0,-1690.73	0/1:552:463,88:463:16299:88:3069:-106.811,0,-1296.34	0/1:353:305,48:305:10867:48:1698:-43.8677,0,-871.108	0/0:454:422,32:422:14912:32:1127:0,-36.0374,-1240.24	0/0:611:556,55:556:19791:55:1919:0,-11.808,-1605.92	0/1:251:226,25:226:7974:25:846:-0.670015,0,-641.381	0/1:335:295,40:295:10512:40:1395:-23.6016,0,-844.3	0/0:296:276,20:276:9737:20:698:0,-26.1697,-812.615	0/1:495:411,84:411:14577:84:2997:-117.02,0,-1161.89	0/1:393:330,63:330:11669:63:2215:-79.9631,0,-931.548	0/1:260:229,31:229:8162:31:1096:-20.1884,0,-653.294	0/1:525:447,78:447:15784:78:2745:-86.4837,0,-1261.51	0/1:761:671,90:671:23698:90:3138:-52.1868,0,-1899.68	0/1:273:243,30:243:8594:30:1025:-10.2387,0,-691.02	0/1:445:390,55:390:13829:55:1923:-37.5637,0,-1109.12	0/1:641:518,122:518:18264:122:4296:-190.984,0,-1448.66	0/1:409:364,45:364:12885:45:1607:-20.7701,0,-1035.18	0/1:1150:982,168:982:34729:168:5898:-183.772,0,-2775.46	0/1:1067:919,148:919:32443:148:5197:-143.177,0,-2594.49	0/1:304:269,35:269:9542:35:1239:-19.9532,0,-766.218	0/1:538:456,82:456:16084:82:2885:-97.1551,0,-1283.84	0/1:219:191,28:191:6714:28:990:-22.9826,0,-537.389	0/1:314:268,46:268:9388:46:1612:-49.336,0,-749.033	0/1:31:28,3:28:996:3:108:-0.710221,0,-80.358	0/1:51:46,5:46:1640:5:176:-0.784731,0,-132.44	0/1:31:22,9:22:772:9:324:-20.014,0,-60.4693	0/1:36:30,6:30:1054:6:212:-8.48655,0,-84.2951	0/1:21:19,2:19:675:2:68:-0.110053,0,-54.5237	0/0:784:718,64:718:25445:64:2261:0,-33.3796,-2085.99	0/1:261:230,31:230:8064:31:1074:-17.8626,0,-646.525	0/1:382:325,57:325:11493:57:2008:-64.732,0,-918.823	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6731	0/1:623:518,105:518:18301:105:3699:-143.704,0,-1457.8	0/1:229:200,29:200:7099:29:1012:-21.6526,0,-569.403	0/1:485:429,55:429:15194:55:1952:-29.1587,0,-1219.59	0/1:318:282,36:282:10044:36:1279:-18.61,0,-807.174	0/0:261:238,23:238:8316:23:820:0,-5.06702,-674.621	0/1:390:340,48:340:12028:48:1703:-35.7086,0,-964.738	0/1:373:330,43:330:11661:43:1504:-22.6668,0,-936.566	0/1:402:343,59:343:12088:59:2033:-60.3944,0,-966.486	0/1:277:242,35:242:8592:35:1227:-26.0804,0,-688.874	0/1:607:499,108:499:17624:108:3781:-154.96,0,-1402.28	0/1:294:264,30:264:9275:30:1050:-6.19232,0,-745.741	0/0:36:33,3:33:1172:3:108:0,-0.850005,-95.2863	0/1:797:683,114:683:24138:114:4012:-117.565,0,-1930.5	0/1:158:137,21:137:4842:21:748:-19.9956,0,-388.239	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/1:300:259,41:259:9075:41:1456:-40.3345,0,-725.509	0/1:212:185,27:185:6599:27:940:-20.4107,0,-529.615	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7278	0/1:21:19,2:19:676:2:72:-0.50805,0,-54.8349	0/1:224:176,48:176:6208:48:1676:-82.5893,0,-490.825	0/1:601:521,80:521:18474:80:2824:-68.0431,0,-1479.11	0/1:26:23,3:23:800:3:108:-2.1603,0,-64.4149	0/1:549:446,102:446:15737:102:3588:-157.041,0,-1249.59	0/1:485:435,50:435:15350:50:1749:-10.379,0,-1234.86	0/1:194:159,35:159:5612:35:1235:-52.4795,0,-446.353	0/1:253:210,43:210:7336:43:1511:-57.3041,0,-583.251	0/1:442:376,66:376:13292:66:2313:-72.8742,0,-1062.33	0/0:198:183,15:183:6495:15:510:0,-13.7667,-538.619	0/1:140:123,17:123:4357:17:604:-12.3776,0,-349.429	0/1:225:199,26:199:7018:26:906:-13.6924,0,-563.024	0/1:341:302,39:302:10666:39:1380:-21.539,0,-856.725	0/1:92:77,15:77:2707:15:527:-18.8756,0,-216.028	0/1:308:268,40:268:9448:40:1358:-28.8751,0,-756.141	0/1:261:228,33:228:8037:33:1140:-23.5675,0,-644.294	0/1:788:675,113:675:23674:113:3966:-117.114,0,-1891.25	0/1:601:510,90:510:18004:90:3123:-97.2045,0,-1437.14	0/1:347:308,39:308:10844:39:1352:-16.0857,0,-870.869	0/1:417:361,56:361:12719:56:1932:-47.7133,0,-1018.27	0/0:46:44,2:44:1584:2:72:0,-7.04772,-135.969	0/1:636:552,84:552:19395:84:2928:-71.3556,0,-1551.25	0/1:371:319,51:319:11206:51:1754:-43.8685,0,-894.773	0/1:532:478,54:478:16929:54:1853:-5.44283,0,-1361.84	0/1:594:502,92:502:17812:92:3283:-111.979,0,-1420.9	0/1:482:433,48:433:15379:48:1664:-1.78226,0,-1237.54	0/1:644:547,97:547:19211:97:3379:-102.799,0,-1532.56	0/1:569:500,69:500:17706:69:2381:-40.3785,0,-1418.57	0/1:139:123,16:123:4342:16:567:-8.23479,0,-348.852	0/1:346:304,42:304:10708:42:1487:-28.6928,0,-858.557	0/1:517:455,62:455:16061:62:2185:-39.997,0,-1286.84	0/0:179:162,17:162:5748:17:599:0,-0.0192068,-462.995	0/0:280:254,25:254:9009:25:892:0,-4.0001,-729.864	0/0:256:237,19:237:8453:19:663:0,-17.543,-700.343	0/1:501:419,82:419:14749:82:2894:-106.654,0,-1174.66	0/1:862:776,86:776:27483:86:3044:-11.237,0,-2211.21
chr03	27778040	.	C	T	181594	PASS	AB=0.719738;ABP=5695.46;AC=97;AF=0.515957;AN=188;AO=9807;CIGAR=1X;DP=13613;DPB=13613;DPRA=0;EPP=21237.9;EPPR=8206.92;GTI=14;LEN=1;MEANALT=1.04255;MQM=56.4397;MQMR=59.8322;NS=94;NUMALT=1;ODDS=2.08494;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=350752;QR=135552;RO=3802;RPL=9807;RPP=21298.6;RPPR=8241.59;RPR=0;RUN=1;SAF=7;SAP=21237.9;SAR=9800;SRF=4;SRP=8224.24;SRR=3798;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:201:38,163:38:1353:163:5807:-461.347,0,-61.5564	0/1:158:31,127:31:1082:127:4497:-355.99,0,-50.1173	0/1:184:74,110:74:2637:110:3935:-297.686,0,-182.168	0/1:292:57,235:57:2048:235:8421:-668.252,0,-96.6908	0/1:78:31,47:31:1093:47:1679:-127.572,0,-75.1973	0/1:45:12,33:12:417:33:1165:-91.3416,0,-24.2671	0/1:115:41,74:41:1442:74:2660:-204.426,0,-95.4534	0/1:130:38,92:38:1368:92:3276:-255.64,0,-84.2693	0/1:315:53,262:53:1904:262:9298:-740.666,0,-76.8087	0/1:181:45,136:45:1586:136:4876:-382.622,0,-88.5399	0/1:126:33,93:33:1179:93:3336:-262.053,0,-68.4833	0/1:276:102,173:102:3663:173:6212:-475.117,0,-246.557	0/1:317:74,243:74:2656:243:8688:-684.256,0,-143.859	0/1:89:30,59:30:1064:59:2112:-162.834,0,-69.2492	0/1:161:60,101:60:2152:101:3626:-277.232,0,-145.472	0/1:142:68,74:68:2425:74:2662:-196.602,0,-175.756	0/1:96:24,71:24:849:71:2544:-199.668,0,-47.809	0/1:100:24,76:24:864:76:2732:-215.84,0,-47.9796	0/1:120:26,94:26:932:94:3369:-264.565,0,-48.0642	0/1:162:49,113:49:1756:113:4011:-311.765,0,-109.557	0/1:321:67,254:67:2374:254:9040:-715.631,0,-117.279	0/1:111:31,80:31:1116:80:2855:-223.288,0,-67.3328	0/1:193:41,152:41:1468:152:5433:-430.076,0,-74.3173	0/1:221:48,173:48:1709:173:6183:-488.647,0,-87.5371	0/1:183:33,150:33:1188:150:5360:-426.416,0,-52.1397	0/1:420:100,320:100:3562:320:11414:-898.859,0,-194.339	0/1:440:105,335:105:3730:335:11952:-940.335,0,-203.447	0/1:149:35,114:35:1241:114:4075:-321.246,0,-67.1321	0/1:168:54,114:54:1902:114:4078:-315.815,0,-120.849	0/1:55:16,39:16:572:39:1400:-108.739,0,-35.2568	0/1:90:34,56:34:1220:56:2008:-152.633,0,-83.0141	1/1:19:1,18:1:36:18:633:-53.6251,-2.1213,0	0/1:30:9,21:9:309:21:756:-59.2403,0,-19.1098	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:15:1,14:1:36:14:504:-42.0681,-0.917175,0	0/1:16:6,10:6:216:10:360:-27.6949,0,-14.974	0/1:412:162,250:162:5759:250:8953:-680.974,0,-394.356	0/1:78:21,57:21:741:57:2028:-159.081,0,-43.5313	0/1:151:32,119:32:1152:119:4264:-338.184,0,-58.5346	0/1:7:4,3:4:144:3:108:-7.94851,0,-11.2064	0/1:157:30,127:30:1072:127:4515:-358.174,0,-49.5307	0/1:105:25,80:25:900:80:2853:-224.275,0,-49.7129	0/1:170:55,115:55:1942:115:4112:-318.203,0,-123.875	0/1:117:56,61:56:2012:61:2192:-161.846,0,-146.126	0/1:107:30,77:30:1080:77:2753:-215.466,0,-65.2893	0/1:186:28,158:28:978:158:5676:-454.492,0,-32.3368	0/1:151:44,107:44:1561:107:3852:-301.058,0,-95.3226	0/1:106:40,66:40:1425:66:2372:-181.569,0,-96.6363	0/1:119:45,74:45:1612:74:2647:-201.606,0,-109.547	0/1:153:23,130:23:828:130:4668:-373.454,0,-28.7865	0/1:121:35,86:35:1252:86:3080:-240.384,0,-76.5604	0/1:22:10,12:10:356:12:432:-32.2727,0,-25.7586	0/1:248:45,203:45:1612:203:7224:-574.594,0,-70.7146	0/1:64:17,47:17:593:47:1654:-129.749,0,-34.4288	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	0/1:115:41,74:41:1427:74:2653:-203.596,0,-94.1012	0/1:111:27,84:27:957:84:3000:-236.3,0,-53.0295	0/1:9:3,6:3:104:6:216:-17.0647,0,-6.99354	0/1:9:2,7:2:72:7:252:-20.3031,0,-4.12745	0/1:80:31,49:31:1108:49:1764:-134.448,0,-75.944	0/1:225:62,163:62:2219:163:5860:-459.023,0,-132.241	0/1:11:1,10:1:36:10:352:-28.6212,0,-0.286945	0/1:144:32,112:32:1148:112:4010:-317.391,0,-60.2794	0/1:182:56,126:56:2008:126:4509:-350.787,0,-126.206	0/1:63:29,34:29:1014:34:1224:-91.3662,0,-72.5888	0/1:98:18,80:18:644:80:2854:-227.013,0,-28.7897	0/1:184:69,115:69:2465:115:4094:-312.636,0,-166.711	0/1:100:60,40:60:2133:40:1425:-98.2639,0,-162.129	0/1:57:19,38:19:684:38:1364:-105.172,0,-44.7316	0/1:60:25,35:25:900:35:1248:-94.0237,0,-63.0664	0/1:96:28,68:28:993:68:2433:-189.947,0,-60.7836	0/1:43:9,34:9:324:34:1214:-96.47,0,-16.5616	0/1:136:36,100:36:1277:100:3600:-281.92,0,-74.291	0/1:118:44,74:44:1524:74:2620:-200.105,0,-101.91	0/1:294:48,246:48:1697:246:8823:-703.856,0,-64.5058	0/1:177:52,125:52:1857:125:4473:-348.704,0,-114.124	0/1:103:35,68:35:1228:68:2409:-185.509,0,-79.8085	0/1:126:37,89:37:1313:89:3204:-250.061,0,-80.5399	0/1:28:5,23:5:180:23:828:-66.3322,0,-8.12322	0/1:195:43,152:43:1533:152:5435:-428.538,0,-79.5579	0/1:109:29,80:29:1044:80:2865:-223.686,0,-61.4616	0/1:237:93,144:93:3306:144:5174:-393.386,0,-226.413	0/1:200:46,154:46:1648:154:5517:-435.139,0,-88.4007	0/1:237:52,184:52:1872:184:6616:-523.069,0,-97.3562	0/1:182:41,141:41:1476:141:5034:-397.768,0,-78.3487	0/1:253:90,163:90:3221:163:5837:-447.961,0,-213.935	0/1:38:21,17:21:756:17:612:-43.7425,0,-56.9281	0/1:156:63,93:63:2268:93:3344:-253.319,0,-157.408	0/1:253:60,193:60:2145:193:6921:-545.786,0,-117.155	0/1:82:30,52:30:1080:52:1867:-143.255,0,-72.8288	0/1:143:48,94:48:1709:94:3372:-260.125,0,-111.009	0/1:134:80,54:80:2868:54:1925:-132.309,0,-216.567	0/1:182:32,150:32:1148:150:5365:-426.56,0,-48.8248	0/1:439:110,329:110:3926:329:11783:-926.291,0,-221.377
chr03	27778065	.	G	A	210222	PASS	AB=0.595075;ABP=1549.34;AC=93;AF=0.494681;AN=188;AO=11720;CIGAR=1X;DP=19700;DPB=19700;DPRA=42.3548;EPP=25444;EPPR=17324.8;GTI=1;LEN=1;MEANALT=1.02151;MQM=56.9858;MQMR=59.9035;NS=94;NUMALT=1;ODDS=87.4664;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=420385;QR=284792;RO=7977;RPL=0;RPP=25452.7;RPPR=17324.8;RPR=11720;RUN=1;SAF=11719;SAP=25444;SAR=1;SRF=7977;SRP=17324.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:9,11:9:320:11:396:-29.9352,0,-23.1218	0/1:599:200,399:200:7157:399:14279:-1097.05,0,-463.729	0/1:192:59,133:59:2109:133:4761:-368.734,0,-132.244	0/1:652:251,401:251:8985:401:14420:-1099.35,0,-612.304	0/1:70:41,29:41:1472:29:1040:-72.6217,0,-111.704	0/1:76:41,35:41:1457:35:1260:-90.5756,0,-108.538	0/1:190:68,122:68:2436:122:4345:-333.583,0,-162.286	0/1:208:73,135:73:2590:135:4825:-369.71,0,-170.732	0/1:114:47,67:47:1669:67:2404:-182.142,0,-116.178	0/1:423:78,345:78:2780:345:12366:-981.856,0,-123.1	0/1:101:14,87:14:500:87:3128:-251.064,0,-14.9321	0/1:102:22,80:22:784:80:2868:-226.369,0,-40.1789	0/1:181:64,117:64:2300:117:4212:-323.738,0,-152.774	0/1:100:49,51:49:1760:51:1820:-133.086,0,-128.581	0/1:95:37,58:37:1320:58:2088:-159.23,0,-90.4904	0/1:98:34,64:34:1220:64:2304:-176.362,0,-80.6059	0/1:193:36,157:36:1292:157:5637:-447.006,0,-58.4846	0/1:178:59,119:59:2112:119:4280:-331.24,0,-136.766	0/1:63:13,50:13:468:50:1796:-142.205,0,-23.4948	0/1:433:275,157:275:9827:157:5632:-376.412,0,-753.941	0/1:356:149,207:149:5291:207:7413:-559.172,0,-369.134	0/1:158:81,77:81:2908:77:2768:-201.656,0,-214.392	0/1:230:55,175:55:1980:175:6294:-496.664,0,-109.238	0/1:285:68,215:68:2414:215:7724:-607.87,0,-132.035	0/1:78:38,40:38:1356:40:1436:-105.796,0,-98.8601	0/1:805:223,582:223:7969:582:20810:-1628.2,0,-474.903	0/1:518:209,309:209:7439:309:11054:-837.175,0,-513.621	0/1:109:25,84:25:900:84:3020:-238.774,0,-48.5078	0/1:469:282,187:282:10053:187:6712:-462.836,0,-763.019	0/1:553:460,93:460:16398:93:3318:-132.142,0,-1308.34	0/1:285:180,105:180:6441:105:3780:-254.464,0,-493.976	0/1:8:6,2:6:216:2:72:-4.42657,0,-17.3823	0/1:26:13,13:13:464:13:464:-34.0122,0,-34.2707	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:9:7,2:7:252:2:72:-4.12252,0,-20.3197	0/1:8:6,2:6:216:2:72:-4.14173,0,-17.3823	0/1:290:130,160:130:4672:160:5760:-430.937,0,-333.341	0/1:210:87,123:87:3109:123:4412:-332.896,0,-216.819	0/1:102:22,80:22:792:80:2876:-227.625,0,-40.8997	0/1:6:2,4:2:72:4:144:-11.4817,0,-5.03054	0/1:461:70,391:70:2486:391:14006:-1118.47,0,-85.2154	0/1:71:28,43:28:1004:43:1544:-117.211,0,-69.3027	0/1:177:70,107:70:2455:107:3835:-291.426,0,-167.919	0/1:187:59,128:59:2124:128:4589:-355.222,0,-135.136	0/1:137:64,73:64:2285:73:2624:-194.985,0,-164.669	0/1:205:102,103:102:3630:103:3704:-271.704,0,-265.192	0/1:186:122,64:122:4365:64:2296:-150.759,0,-337.028	0/1:317:200,117:200:7138:117:4204:-283.008,0,-547.033	0/1:240:149,91:149:5326:91:3276:-222.8,0,-407.224	0/1:492:169,323:169:6007:323:11600:-895.274,0,-392.61	0/1:254:121,133:121:4329:133:4761:-351.851,0,-312.622	0/1:14:9,5:9:324:5:180:-12.3342,0,-25.2914	0/1:318:71,247:71:2544:247:8872:-699.747,0,-133.377	0/1:65:17,48:17:608:48:1728:-136.12,0,-35.4851	0/1:17:10,7:10:360:7:252:-17.8925,0,-27.6268	0/1:192:68,124:68:2421:124:4404:-337.308,0,-160.311	0/1:73:14,59:14:500:59:2101:-167.194,0,-23.361	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:60:19,41:19:684:41:1476:-114.879,0,-43.8285	0/1:146:64,82:64:2254:82:2933:-219.808,0,-159.17	0/1:235:43,192:43:1548:192:6908:-549.85,0,-68.8555	0/1:13:9,4:9:324:4:140:-9.02647,0,-25.5925	0/1:970:349,621:349:12466:621:22282:-1711.18,0,-829.74	0/1:360:228,132:228:8130:132:4748:-319.052,0,-623.165	0/1:142:72,70:72:2546:70:2520:-184.237,0,-186.62	0/1:221:98,123:98:3457:123:4389:-328.578,0,-244.816	0/1:405:257,148:257:9175:148:5324:-356.574,0,-703.766	0/1:161:59,102:59:2108:102:3649:-279.093,0,-141.523	0/1:32:15,17:15:540:17:612:-45.6945,0,-39.3036	0/1:139:83,56:83:2950:56:2016:-139.732,0,-223.887	0/1:137:68,69:68:2429:69:2484:-182.532,0,-177.623	0/1:71:17,54:17:597:54:1906:-149.937,0,-32.6768	0/1:172:66,106:66:2360:106:3797:-289.692,0,-160.881	0/1:142:28,114:28:1004:114:4088:-322.447,0,-47.9062	0/1:330:148,182:148:5259:182:6528:-486.789,0,-373.788	0/1:591:137,454:137:4893:454:16293:-1285.86,0,-262.613	0/1:136:68,68:68:2440:68:2440:-178.113,0,-178.915	0/1:363:176,187:176:6274:187:6697:-492.303,0,-455.456	0/1:20:10,10:10:360:10:360:-26.7024,0,-26.7237	0/1:337:72,265:72:2573:265:9498:-751.723,0,-130.371	0/1:218:146,72:146:5224:72:2588:-167.268,0,-404.671	0/1:318:187,131:187:6716:131:4689:-326.181,0,-508.206	0/1:250:41,209:41:1472:209:7505:-597.685,0,-57.5049	0/1:173:59,114:59:2124:114:4096:-316.699,0,-139.35	0/1:259:59,200:59:2088:200:7184:-567.853,0,-110.2	0/1:238:113,125:113:4021:125:4496:-332.953,0,-290.422	0/1:65:18,47:18:644:47:1692:-131.405,0,-38.7236	0/1:104:24,80:24:856:80:2865:-224.239,0,-46.054	0/1:144:48,96:48:1705:96:3452:-267.212,0,-110.385	0/1:58:17,41:17:612:41:1468:-114.356,0,-37.9537	0/1:75:21,54:21:752:54:1936:-151.088,0,-45.429	0/1:102:25,77:25:896:77:2764:-217.585,0,-50.2553	0/1:241:172,69:172:6145:69:2480:-150.859,0,-480.591	0/1:263:96,167:96:3436:167:6008:-461.494,0,-230.276
chr03	27778075	.	CCTT	CCTG,TCTG	416870	PASS	AB=0.82617,0.166963;ABP=7269.85,7579.04;AC=147,41;AF=0.781915,0.218085;AN=188;AO=17918,1361;CIGAR=3M1X,1X2M1X;DP=19401;DPB=19400.8;DPRA=0,1.13029;EPP=38807.3,2958.38;EPPR=31.2394;GTI=10;LEN=1,4;MEANALT=2.46809,2.98039;MQM=58.9958,48.0602;MQMR=60;NS=94;NUMALT=2;ODDS=581.537;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=640078,48299;QR=459;RO=13;RPL=11,0;RPP=38816,2958.38;RPPR=31.2394;RPR=17907,1361;RUN=1,1;SAF=17917,1361;SAP=38902.8,2958.38;SAR=1,0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21,0:0:0:21,0:744,0:-67.2507,-6.32163,0,-67.2507,-6.32163,-67.2507	1/2:596:0,463,127:0:0:463,127:16566,4523:-1713.06,-363.998,-224.622,-1349.12,0,-1310.89	1/2:190:0,150,39:0:0:150,39:5318,1374:-543.574,-110.551,-65.3967,-433.139,0,-421.399	1/1:641:1,634,0:1:34:634,0:22587,0:-2027.47,-188.091,0,-2027.77,-190.853,-2030.53	1/2:70:0,61,9:0:0:61,9:2184,322:-204.508,-26.4194,-8.0566,-178.444,0,-175.735	1/1:74:0,69,5:0:0:69,5:2460,180:-221.224,-20.7711,0,-206.715,-5.90658,-205.21	1/2:188:0,161,27:0:0:161,27:5760,962:-547.982,-78.3524,-29.8865,-469.984,0,-461.856	1/2:206:0,165,40:0:0:165,40:5871,1419:-592.226,-114.317,-64.6469,-478.057,0,-466.016	1/1:112:0,112,0:0:0:112,0:3975,0:-357.79,-33.7154,0,-357.79,-33.7154,-357.79	1/2:416:2,349,61:2:72:349,61:12451,2151:-1180.67,-168.266,-69.0817,-1007.17,0,-994.677	1/2:101:0,87,13:0:0:87,13:3093,467:-289.921,-37.8926,-11.703,-252.031,0,-248.117	1/2:100:0,76,24:0:0:76,24:2716,847:-289.528,-68.5086,-45.6304,-221.37,0,-214.146	1/1:177:0,175,0:0:0:175,0:6271,0:-563.241,-52.6803,0,-563.241,-52.6803,-563.241	1/1:98:0,97,0:0:0:97,0:3450,0:-310.013,-29.1999,0,-310.013,-29.1999,-310.013	1/2:95:0,74,19:0:0:74,19:2627,683:-269.578,-55.5795,-33.3033,-214.113,0,-208.393	1/2:97:0,74,21:0:0:74,21:2652,749:-275.757,-59.6349,-37.3587,-216.122,0,-209.8	1/2:189:0,161,28:0:0:161,28:5784,1000:-551.6,-80.4765,-32.0106,-471.476,0,-463.047	1/1:182:0,182,0:0:0:182,0:6516,0:-585.857,-54.7875,0,-585.857,-54.7875,-585.857	1/2:62:0,48,13:0:0:48,13:1712,467:-177.158,-37.7732,-23.3238,-139.511,0,-135.597	1/1:421:1,418,0:1:30:418,0:14927,0:-1340,-123.44,0,-1340.31,-125.831,-1342.7	1/1:344:0,344,0:0:0:344,0:12264,0:-1103.14,-103.554,0,-1103.14,-103.554,-1103.14	1/1:158:0,157,0:0:0:157,0:5587,0:-502.398,-47.2617,0,-502.398,-47.2617,-502.398	1/2:232:1,199,32:1:36:199,32:7107,1136:-668.07,-88.996,-32.0287,-576.431,0,-569.736	1/2:283:0,246,32:0:0:246,32:8801,1137:-809.069,-91.9088,-17.8554,-717.208,0,-707.575	1/1:78:0,78,0:0:0:78,0:2776,0:-249.91,-23.4803,0,-249.91,-23.4803,-249.91	1/2:799:0,708,85:0:0:708,85:25286,2981:-2303.21,-241.911,-28.7813,-2061.32,0,-2035.73	1/1:508:0,503,0:0:0:503,0:17993,0:-1617.61,-151.418,0,-1617.61,-151.418,-1617.61	1/2:108:0,90,17:0:0:90,17:3225,600:-311.543,-48.5782,-21.4855,-263.033,0,-257.915	1/1:451:1,447,0:1:36:447,0:15989,0:-1434.8,-131.607,0,-1435.1,-134.56,-1438.04	1/1:540:1,539,0:1:36:539,0:19231,0:-1726.03,-158.958,0,-1726.33,-162.255,-1729.27	1/1:279:1,276,0:1:36:276,0:9884,0:-885.833,-80.1296,0,-886.134,-83.0843,-889.071	1/1:8:0,8,0:0:0:8,0:288,0:-26.2656,-2.40824,0,-26.2656,-2.40824,-26.2656	1/2:26:0,20,5:0:0:20,5:712,180:-72.4839,-14.5597,-8.53905,-57.9217,0,-56.4165	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:9:0,9,0:0:0:9,0:324,0:-29.5011,-2.70927,0,-29.5011,-2.70927,-29.5011	1/1:8:0,8,0:0:0:8,0:284,0:-25.6279,-2.40824,0,-25.6279,-2.40824,-25.6279	1/1:278:0,276,1:0:0:276,1:9879,36:-888.547,-83.0843,0,-885.618,-80.0954,-885.317	1/2:211:0,175,35:0:0:175,35:6247,1248:-610.109,-101.083,-48.4029,-509.128,0,-498.592	1/1:101:0,93,8:0:0:93,8:3340,270:-300.165,-27.9958,0,-278.504,-5.99857,-276.096	1/2:6:0,5,1:0:0:5,1:180,29:-17.3365,-2.59354,-1.08839,-15.0441,0,-14.7431	1/2:455:0,408,44:0:0:408,44:14535,1549:-1308.74,-124.874,-2.05326,-1183.93,0,-1170.69	1/1:70:0,70,0:0:0:70,0:2490,0:-223.688,-21.0721,0,-223.688,-21.0721,-223.688	1/2:171:0,151,18:0:0:151,18:5381,648:-490.985,-52.4776,-7.02205,-438.519,0,-433.101	1/2:186:0,137,48:0:0:137,48:4897,1704:-537.49,-138.338,-97.0967,-399.298,0,-384.849	1/1:133:0,132,0:0:0:132,0:4744,0:-426.626,-39.736,0,-426.626,-39.736,-426.626	1/1:203:0,199,0:0:0:199,0:7132,0:-641.531,-59.905,0,-641.531,-59.905,-641.531	1/1:180:0,179,0:0:0:179,0:6386,0:-574.443,-53.8844,0,-574.443,-53.8844,-574.443	1/1:308:1,305,0:1:36:305,0:10892,0:-976.548,-88.8634,0,-976.849,-91.8142,-979.787	1/1:239:1,236,0:1:36:236,0:8439,0:-755.911,-68.1057,0,-756.212,-71.0431,-759.149	1/1:480:0,479,0:0:0:479,0:17163,0:-1543.55,-144.193,0,-1543.55,-144.193,-1543.55	1/1:253:0,250,1:0:0:250,1:8917,27:-801.724,-75.2575,0,-799.62,-73.1816,-799.319	1/1:14:0,14,0:0:0:14,0:496,0:-44.9709,-4.21442,0,-44.9709,-4.21442,-44.9709	1/1:317:0,290,25:0:0:290,25:10384,897:-931.946,-87.2987,0,-859.665,-15.0108,-852.139	1/2:64:0,54,9:0:0:54,9:1914,323:-182.197,-26.2737,-10.018,-155.921,0,-153.211	1/1:17:0,17,0:0:0:17,0:612,0:-55.3947,-5.11751,0,-55.3947,-5.11751,-55.3947	1/2:190:0,148,40:0:0:148,40:5300,1410:-546.057,-113.968,-69.4156,-432.133,0,-420.092	1/2:73:0,65,8:0:0:65,8:2304,288:-211.186,-23.5318,-3.9649,-188.009,0,-185.601	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:60:0,45,12:0:0:45,12:1612,419:-165.415,-33.943,-20.3966,-131.464,0,-127.852	1/2:144:0,130,14:0:0:130,14:4632,504:-418.661,-41.1682,-2.03429,-377.85,0,-373.635	1/2:235:0,195,40:0:0:195,40:6944,1426:-681.395,-115.772,-57.071,-565.977,0,-553.936	1/1:13:0,13,0:0:0:13,0:468,0:-42.455,-3.91339,0,-42.455,-3.91339,-42.455	1/1:956:0,951,1:0:0:951,1:34018,30:-3059.5,-286.28,0,-3057.11,-283.886,-3056.81	1/1:355:0,350,3:0:0:350,3:12528,108:-1126.81,-105.361,0,-1118.04,-96.5903,-1117.14	1/1:141:0,140,0:0:0:140,0:4995,0:-449.281,-42.1442,0,-449.281,-42.1442,-449.281	1/1:215:0,215,0:0:0:215,0:7641,0:-687.694,-64.7215,0,-687.694,-64.7215,-687.694	1/1:397:0,396,0:0:0:396,0:14149,0:-1272.5,-119.208,0,-1272.5,-119.208,-1272.5	1/2:158:0,110,46:0:0:110,46:3941,1649:-454.888,-133.48,-100.367,-321.434,0,-307.586	1/1:30:0,30,0:0:0:30,0:1076,0:-97.0676,-9.0309,0,-97.0676,-9.0309,-97.0676	1/1:133:0,133,0:0:0:133,0:4756,0:-428.066,-40.037,0,-428.066,-40.037,-428.066	1/1:139:0,139,0:0:0:139,0:4972,0:-447.59,-41.8432,0,-447.59,-41.8432,-447.59	1/2:67:0,54,13:0:0:54,13:1932,453:-194.398,-36.8873,-20.6317,-157.859,0,-153.946	1/1:164:0,164,0:0:0:164,0:5852,0:-526.358,-49.3689,0,-526.358,-49.3689,-526.358	1/2:143:0,96,46:0:0:96,46:3436,1620:-409.554,-129.618,-100.719,-280.034,0,-266.187	1/1:323:1,320,0:1:35:320,0:11431,0:-1024.57,-93.4586,0,-1024.87,-96.3296,-1027.72	1/2:582:0,487,94:0:0:487,94:17401,3330:-1688.05,-269.699,-123.097,-1418.45,0,-1390.15	1/2:132:0,118,14:0:0:118,14:4236,498:-385.804,-40.4524,-4.93083,-345.704,0,-341.49	1/1:362:1,358,2:1:36:358,2:12817,72:-1148.59,-104.83,0,-1143.09,-101.964,-1145.42	1/1:21:0,21,0:0:0:21,0:744,0:-67.267,-6.32163,0,-67.267,-6.32163,-67.267	1/2:333:0,289,44:0:0:289,44:10341,1579:-970.825,-128.179,-41.181,-843.003,0,-829.758	1/1:214:1,212,0:1:36:212,0:7577,0:-678.208,-60.8809,0,-678.509,-63.8184,-681.446	1/1:315:0,312,1:0:0:312,1:11130,36:-1001.07,-93.9214,0,-998.144,-90.9973,-997.843	1/2:247:0,200,46:0:0:200,46:7116,1642:-711.781,-131.931,-71.7247,-579.845,0,-565.998	1/1:173:0,173,0:0:0:173,0:6200,0:-558.05,-52.0782,0,-558.05,-52.0782,-558.05	1/2:253:0,211,40:0:0:211,40:7531,1427:-729.552,-115.813,-52.2957,-613.773,0,-601.731	1/1:237:0,236,1:0:0:236,1:8434,36:-758.405,-71.0431,0,-755.482,-67.7611,-755.181	1/2:64:0,48,16:0:0:48,16:1700,575:-184.313,-46.1134,-31.664,-138.551,0,-133.734	1/2:102:0,80,22:0:0:80,22:2860,781:-295.227,-62.3051,-38.2227,-233.27,0,-226.648	1/1:145:0,144,0:0:0:144,0:5158,0:-463.787,-43.3483,0,-463.787,-43.3483,-463.787	1/2:57:0,45,12:0:0:45,12:1616,425:-166.21,-34.725,-21.1787,-131.838,0,-128.226	1/2:74:0,52,22:0:0:52,22:1860,760:-212.986,-61.3337,-45.6801,-151.998,0,-145.376	1/2:99:0,62,37:0:0:62,37:2184,1322:-285.314,-107.556,-88.8924,-178.112,0,-166.974	1/1:234:0,230,0:0:0:230,0:8175,0:-735.427,-69.2369,0,-735.427,-69.2369,-735.427	1/1:258:0,257,0:0:0:257,0:9208,0:-828.164,-77.3647,0,-828.164,-77.3647,-828.164
chr03	27778138	.	A	T	629582	PASS	AB=0.792446;ABP=21656.5;AC=108;AF=0.574468;AN=188;AO=26898;CIGAR=1X;DP=33222;DPB=33222;DPRA=0;EPP=58411.3;EPPR=13702.8;GTI=31;LEN=1;MEANALT=1.1383;MQM=45.0714;MQMR=55.771;NS=94;NUMALT=1;ODDS=3.6949;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=956927;QR=225184;RO=6309;RPL=9406;RPP=5281.4;RPPR=13676.8;RPR=17492;RUN=1;SAF=9406;SAP=5281.4;SAR=17492;SRF=3;SRP=13676.8;SRR=6306;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:278:29,249:29:1016:249:8895:-667.529,0,-8.0174	1/1:441:11,430:11:396:430:15312:-1306.63,-96.7715,0	0/1:417:76,341:76:2732:341:12191:-919.789,0,-120.54	0/1:899:132,767:132:4714:767:27277:-2083.46,0,-152.547	0/1:163:19,144:19:684:144:5131:-397.728,0,-12.7774	0/1:99:27,72:27:964:72:2576:-195.377,0,-57.2749	0/1:165:27,138:27:955:138:4860:-372.948,0,-36.4963	0/1:423:49,374:49:1764:374:13337:-1033,0,-31.573	0/1:549:111,438:111:3966:438:15624:-1170.5,0,-191.616	0/1:582:105,477:105:3716:477:16972:-1274.06,0,-157.759	0/1:227:49,178:49:1743:178:6349:-473.187,0,-88.5754	0/1:317:99,218:99:3487:218:7754:-568.964,0,-218.28	0/1:480:118,361:118:4193:361:12871:-952.334,0,-232.999	0/1:194:65,129:65:2328:129:4596:-332.044,0,-151.156	0/1:267:85,182:85:3048:182:6444:-465.284,0,-193.905	0/1:176:58,118:58:2066:118:4215:-305.902,0,-133.162	0/1:219:45,174:45:1616:174:6228:-473.753,0,-79.804	0/1:230:50,180:50:1746:180:6415:-486.674,0,-87.8634	0/1:177:26,151:26:924:151:5381:-408.897,0,-30.1949	0/1:554:86,467:86:3056:467:16599:-1261.93,0,-107.807	0/1:887:96,790:96:3440:790:28125:-2118.12,0,-42.6027	1/1:422:34,388:34:1211:388:13779:-1093.9,-18.3484,0	0/1:565:83,481:83:2968:481:17105:-1296.11,0,-96.7186	1/1:505:45,460:45:1616:460:16365:-1259.74,-6.39765,0	0/1:435:65,370:65:2322:370:13152:-981.622,0,-77.5487	0/1:1430:160,1270:160:5727:1270:45135:-3508.02,0,-83.095	1/1:1047:77,970:77:2760:970:34468:-2690.7,-66.9694,0	0/1:221:41,180:41:1464:180:6409:-474.697,0,-65.5132	0/1:646:214,432:214:7662:432:15366:-1146.07,0,-491.519	0/1:224:29,195:29:1036:195:6968:-530.151,0,-25.9874	0/1:327:82,245:82:2917:245:8673:-649.206,0,-163.486	1/1:16:1,15:1:36:15:532:-41.9927,-1.21821,0	1/1:28:0,28:0:0:28:1000:-86.2147,-8.42884,0	1/1:27:1,26:1:36:26:936:-76.9249,-4.52954,0	0/1:43:21,22:21:743:22:779:-54.2184,0,-54.1142	0/1:20:7,13:7:237:13:464:-34.7383,0,-15.6385	0/1:763:253,510:253:9019:510:18204:-1337.91,0,-576.618	0/1:318:56,262:56:2012:262:9266:-705.219,0,-85.5252	0/1:236:38,198:38:1360:198:7045:-533.31,0,-51.3557	1/1:5:0,5:0:0:5:176:-15.2572,-1.50515,0	0/1:546:65,481:65:2328:481:17118:-1316.07,0,-45.1035	0/1:173:36,137:36:1288:137:4883:-359.668,0,-63.6703	0/1:390:45,345:45:1612:345:12300:-933.296,0,-27.877	0/1:217:58,159:58:2057:159:5644:-414.552,0,-119.643	0/1:233:76,157:76:2691:157:5599:-404.034,0,-171.604	0/1:660:133,527:133:4780:527:18814:-1427.38,0,-229.328	0/1:307:77,230:77:2723:230:8193:-619.364,0,-152.875	0/1:384:112,272:112:4011:272:9699:-717.957,0,-244.014	0/1:367:95,272:95:3387:272:9718:-718.316,0,-193.775	0/1:547:92,454:92:3295:454:16083:-1228.79,0,-131.253	0/1:435:106,329:106:3804:329:11621:-874.099,0,-210.177	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:543:33,510:33:1184:510:18214:-1461.18,-56.6392,0	0/1:211:29,182:29:1036:182:6467:-497.915,0,-29.8911	1/1:13:0,13:0:0:13:468:-40.7511,-3.91339,0	0/1:383:102,281:102:3623:281:9999:-734.997,0,-209.956	0/1:195:26,166:26:920:166:5870:-450.589,0,-24.8844	0/1:9:1,8:1:36:8:279:-21.9413,0,-0.879958	0/1:34:7,27:7:252:27:950:-73.8491,0,-12.7609	0/1:237:30,207:30:1065:207:7312:-560.374,0,-24.8156	0/1:497:109,388:109:3896:388:13848:-1018.49,0,-200.153	1/1:14:0,14:0:0:14:481:-42.2331,-4.21442,0	0/1:1055:175,880:175:6275:880:31301:-2401.41,0,-244.602	0/1:454:70,384:70:2489:384:13636:-1032.19,0,-87.1733	0/1:211:56,155:56:1982:155:5528:-413.826,0,-115.073	0/1:348:56,291:56:1990:291:10300:-782.913,0,-74.0947	0/1:435:62,373:62:2216:373:13274:-1016.52,0,-68.193	0/1:268:65,203:65:2315:203:7252:-533.421,0,-127.75	0/1:81:28,53:28:999:53:1891:-136.312,0,-65.743	0/1:189:36,153:36:1292:153:5456:-415.786,0,-59.6442	0/1:177:67,109:67:2395:109:3851:-278.936,0,-161.196	0/1:116:13,103:13:468:103:3648:-282.098,0,-7.48418	0/1:501:113,388:113:4032:388:13829:-1033.54,0,-212.07	0/1:278:90,187:90:3223:187:6679:-486.809,0,-206.42	0/1:719:141,578:141:5005:578:20535:-1542.02,0,-233.442	1/1:725:48,677:48:1715:677:24098:-1907.39,-63.9116,0	1/1:273:24,249:24:864:249:8850:-692.123,-4.18861,0	0/1:340:81,259:81:2912:259:9238:-691.361,0,-159.802	0/1:25:3,22:3:108:22:784:-61.0714,0,-2.54098	0/1:574:54,520:54:1940:520:18494:-1411.27,0,-2.02945	0/1:248:59,189:59:2109:189:6716:-507.727,0,-115.194	0/1:714:222,492:222:7941:492:17507:-1275.39,0,-497.902	0/1:385:82,302:82:2937:302:10724:-799.841,0,-147.951	0/1:473:95,378:95:3372:378:13432:-996.143,0,-160.142	0/1:358:67,291:67:2393:291:10397:-788.503,0,-107.289	0/1:480:171,309:171:6068:309:10961:-786.889,0,-399.68	0/1:103:22,81:22:762:81:2873:-219.143,0,-37.8465	0/1:216:75,141:75:2692:141:5015:-365.599,0,-176.342	0/1:387:77,309:77:2747:309:11023:-824.489,0,-130.716	0/1:77:30,47:30:1076:47:1671:-121.179,0,-73.9179	0/1:228:66,162:66:2350:162:5752:-412.539,0,-143.113	0/1:187:81,106:81:2904:106:3766:-264.067,0,-205.111	0/1:534:117,415:117:4187:415:14710:-1102.97,0,-213.97	0/1:632:161,471:161:5758:471:16702:-1225.13,0,-325.861
chr03	27778165	.	C	T	287053	PASS	AB=0.728233;ABP=10406.7;AC=101;AF=0.543011;AN=186;AO=17314;CIGAR=1X;DP=23608;DPB=23608;DPRA=0;EPP=37599.9;EPPR=13652.9;GTI=17;LEN=1;MEANALT=1.06452;MQM=37.2049;MQMR=55.7692;NS=93;NUMALT=1;ODDS=0.0246649;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=619036;QR=224836;RO=6286;RPL=17314;RPP=37599.9;RPPR=13652.9;RPR=0;RUN=1;SAF=0;SAP=37599.9;SAR=17314;SRF=0;SRP=13652.9;SRR=6286;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:251:28,223:28:996:223:7966:-593.428,0,-14.3882	1/1:190:11,179:11:396:179:6363:-502.838,-21.213,0	0/1:312:74,238:74:2644:238:8487:-620.496,0,-144.233	0/1:535:133,402:133:4764:402:14372:-1031.73,0,-266.61	0/1:80:19,61:19:676:61:2183:-157.398,0,-37.067	0/1:58:26,32:26:928:32:1149:-79.6594,0,-66.3785	0/1:87:26,61:26:928:61:2192:-156.037,0,-57.5471	0/1:248:49,199:49:1756:199:7131:-527.847,0,-83.5335	0/1:462:114,348:114:4072:348:12456:-911.764,0,-227.342	0/1:418:103,315:103:3659:315:11308:-813.844,0,-202.563	0/1:159:48,111:48:1719:111:3960:-280.372,0,-106.734	0/1:275:99,176:99:3530:176:6297:-449.988,0,-233.75	0/1:398:118,280:118:4228:280:10018:-721.386,0,-260.798	0/1:163:65,98:65:2332:98:3508:-243.601,0,-160.9	0/1:224:86,138:86:3092:138:4950:-343.067,0,-210.813	0/1:146:59,87:59:2120:87:3110:-215.918,0,-147.052	0/1:137:45,92:45:1620:92:3278:-233.165,0,-104.848	0/1:160:51,109:51:1815:109:3901:-282.073,0,-115.146	0/1:121:26,95:26:936:95:3400:-248.536,0,-48.1344	0/1:349:83,266:83:2972:266:9426:-680.485,0,-162.001	0/1:684:94,590:94:3357:590:21042:-1543.83,0,-96.3048	0/1:251:34,217:34:1220:217:7761:-585.872,0,-33.9307	0/1:374:81,293:81:2893:293:10486:-759.252,0,-147.482	0/1:317:46,271:46:1624:271:9715:-712.272,0,-50.3551	0/1:346:63,283:63:2252:283:10100:-735.109,0,-98.0506	0/1:871:158,713:158:5661:713:25498:-1910.39,0,-245.603	0/1:761:79,682:79:2804:682:24381:-1802,0,-23.2339	0/1:184:41,143:41:1476:143:5140:-370.704,0,-77.7314	0/1:450:212,237:212:7600:237:8461:-583.483,0,-545.036	0/1:154:31,123:31:1104:123:4408:-320.376,0,-53.2026	0/1:206:83,123:83:2953:123:4401:-301.313,0,-203.062	1/1:13:1,12:1:36:12:428:-32.6336,-0.315115,0	1/1:17:0,17:0:0:17:608:-51.2902,-5.11751,0	1/1:22:1,21:1:36:21:756:-60.7286,-3.02439,0	0/1:39:20,19:20:708:19:684:-45.7762,0,-52.197	0/1:14:7,7:7:252:7:252:-17.4662,0,-18.8145	0/1:649:252,397:252:9039:397:14223:-1014.06,0,-612.915	0/1:185:56,129:56:2000:129:4617:-329.292,0,-124.483	0/1:175:37,138:37:1332:138:4933:-361.846,0,-67.4704	1/1:4:0,4:0:0:4:144:-12.3807,-1.20412,0	0/1:323:62,258:62:2220:258:9260:-677.448,0,-103.272	0/1:142:35,107:35:1247:107:3820:-273.888,0,-69.5732	0/1:278:45,233:45:1597:233:8309:-610.074,0,-60.284	0/1:171:58,113:58:2079:113:4060:-285.053,0,-135.294	0/1:185:74,111:74:2644:111:3988:-274.029,0,-181.933	0/1:520:135,384:135:4844:384:13716:-1011.48,0,-277.265	0/1:201:77,124:77:2756:124:4433:-313.477,0,-187.754	0/1:267:111,156:111:3971:156:5575:-384.292,0,-275.804	0/1:285:94,191:94:3368:191:6802:-484.706,0,-216.411	0/1:310:90,220:90:3223:220:7822:-557.946,0,-196.164	0/1:320:108,212:108:3841:212:7597:-545.753,0,-248.092	.:.:.:.:.:.:.:.	1/1:357:32,325:32:1152:325:11608:-870.627,-3.53067,0	0/1:142:28,114:28:1004:114:4085:-303.981,0,-47.7792	1/1:4:0,4:0:0:4:144:-11.7674,-1.20412,0	0/1:304:104,200:104:3724:200:7165:-504.03,0,-242.821	0/1:107:28,79:28:1008:79:2836:-204.978,0,-58.3651	0/1:6:1,5:1:36:5:180:-13.9424,0,-1.78305	0/1:16:7,9:7:252:9:324:-23.2571,0,-18.1794	0/1:142:29,113:29:1044:113:4040:-294.321,0,-51.5285	0/1:403:104,299:104:3732:299:10724:-766.216,0,-213.687	1/1:7:0,7:0:0:7:252:-21.4153,-2.10721,0	0/1:743:178,565:178:6392:565:20157:-1492.99,0,-348.669	0/1:281:71,210:71:2544:210:7504:-534.164,0,-144.194	0/1:140:56,84:56:1999:84:3024:-209.761,0,-137.949	0/1:205:58,147:58:2068:147:5268:-374.055,0,-124.048	0/1:270:64,206:64:2288:206:7358:-533.232,0,-124.331	0/1:224:66,158:66:2368:158:5642:-401.944,0,-145.754	0/1:72:28,44:28:1008:44:1561:-109.705,0,-69.2641	0/1:126:36,90:36:1292:90:3224:-233.5,0,-78.6091	0/1:139:65,74:65:2336:74:2648:-183.05,0,-167.523	0/1:66:13,53:13:464:53:1874:-137.573,0,-22.1773	0/1:415:114,301:114:4040:301:10767:-784.217,0,-238.662	0/1:239:88,150:88:3141:150:5371:-381.633,0,-210.765	0/1:510:136,374:136:4859:374:13361:-960.715,0,-283.2	0/1:492:48,444:48:1724:444:15879:-1175.07,0,-7.0426	0/1:156:24,131:24:864:131:4635:-345.003,0,-31.0229	0/1:264:83,181:83:2971:181:6488:-465.834,0,-187.984	0/1:15:3,12:3:108:12:413:-30.9733,0,-5.55128	0/1:389:53,336:53:1881:336:12036:-886.742,0,-52.4106	0/1:156:58,98:58:2084:98:3520:-246.733,0,-140.642	0/1:545:222,323:222:7941:323:11519:-792.866,0,-547.061	0/1:286:81,205:81:2891:205:7331:-525.819,0,-173.411	0/1:391:97,294:97:3476:294:10508:-757.142,0,-194.14	0/1:235:68,167:68:2435:167:5957:-427.678,0,-148.084	0/1:398:171,227:171:6119:227:8148:-557.234,0,-428.926	0/1:66:22,44:22:775:44:1576:-113.478,0,-50.1582	0/1:176:73,103:73:2589:103:3673:-257.804,0,-180.237	0/1:332:76,256:76:2706:256:9160:-672.122,0,-143.568	0/1:58:30,28:30:1076:28:996:-66.4982,0,-79.6375	0/1:196:64,132:64:2277:132:4736:-330.197,0,-14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chr03	27877860	.	G	A	13468.4	PASS	AB=0.497274;ABP=3.11683;AC=47;AF=0.255435;AN=184;AO=825;CIGAR=1X;DP=3845;DPB=3845;DPRA=0.796151;EPP=1794.48;EPPR=6554.34;GTI=2;LEN=1;MEANALT=1.06122;MQM=59.943;MQMR=59.9317;NS=92;NUMALT=1;ODDS=0.150955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29496;QR=106752;RO=3017;RPL=825;RPP=1794.48;RPPR=6554.34;RPR=0;RUN=1;SAF=825;SAP=1794.48;SAR=0;SRF=3017;SRP=6554.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:12,8:12:428:8:288:-20.2444,0,-32.8367	0/1:43:19,24:19:680:24:860:-64.7775,0,-48.5849	0/1:71:34,37:34:1199:37:1319:-97.6372,0,-86.8413	0/0:88:88,0:88:3137:0:0:0,-26.4906,-282.555	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:9:6,3:6:216:3:97:-6.33924,0,-17.0812	0/1:39:9,30:9:324:30:1068:-84.6919,0,-17.7657	0/1:35:7,28:7:252:28:988:-78.6952,0,-12.4929	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	0/1:41:21,20:21:737:20:720:-52.7865,0,-54.3084	0/1:30:13,17:13:464:17:608:-46.0211,0,-33.0666	0/1:51:26,25:26:887:25:896:-65.6078,0,-64.7855	0/0:47:47,0:47:1652:0:0:0,-14.1484,-148.959	0/0:36:36,0:36:1267:0:0:0,-10.8371,-114.332	0/1:60:32,28:32:1108:28:1008:-72.9746,0,-81.9622	0/1:44:30,14:30:1071:14:504:-32.4528,0,-83.4563	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	0/0:7:7,0:7:228:0:0:0,-2.10721,-20.8376	0/1:19:13,6:13:460:6:216:-14.0709,0,-36.0158	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.353	0/0:130:130,0:130:4574:0:0:0,-39.1339,-411.803	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0592	0/1:35:15,20:15:532:20:716:-54.2317,0,-37.677	0/1:41:32,9:32:1129:9:324:-17.1636,0,-89.5741	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:75:36,39:36:1283:39:1400:-103.715,0,-93.1954	0/0:100:100,0:100:3517:0:0:0,-30.103,-316.743	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.787	0/0:76:76,0:76:2686:0:0:0,-22.8783,-241.985	0/0:67:66,1:66:2340:1:36:0,-16.5707,-207.262	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:97:97,0:97:3417:0:0:0,-29.1999,-307.737	0/1:29:17,11:17:608:11:396:-27.3423,0,-46.4162	0/1:31:20,11:20:703:11:381:-25.2896,0,-54.2616	.:.:.:.:.:.:.:.	0/1:67:32,35:32:1118:35:1256:-93.1763,0,-80.7547	0/0:28:28,0:28:961:0:0:0,-8.42884,-86.7983	0/1:37:21,16:21:748:16:572:-40.6753,0,-56.5072	0/1:19:7,12:7:235:12:432:-33.5016,0,-15.7584	0/0:20:20,0:20:694:0:0:0,-6.0206,-62.7804	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.646	0/0:27:27,0:27:951:0:0:0,-8.12781,-85.9043	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:35:35,0:35:1236:0:0:0,-10.536,-111.544	.:.:.:.:.:.:.:.	0/1:54:20,34:20:712:34:1209:-92.8594,0,-48.151	0/1:33:24,9:24:852:9:324:-19.5719,0,-67.0664	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:73:37,36:37:1291:36:1292:-94.6086,0,-94.4946	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:37:15,22:15:531:22:788:-60.1067,0,-36.9838	0/1:71:40,31:40:1428:31:1088:-76.8533,0,-107.444	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:19:19,0:19:668:0:0:0,-5.71957,-60.4457	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/0:52:52,0:52:1840:0:0:0,-15.6536,-165.871	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0726	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.45	0/1:89:38,50:38:1360:50:1792:-134.712,0,-95.8502	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.123	0/0:28:28,0:28:974:0:0:0,-8.42884,-87.9707	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:89:87,1:87:3086:1:36:0,-23.2522,-274.368	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/0:89:89,0:89:3179:0:0:0,-26.7917,-286.278	0/1:95:52,43:52:1851:43:1544:-110.655,0,-138.271	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.656	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:58:31,27:31:1095:27:968:-69.9776,0,-81.3994	0/0:44:44,0:44:1556:0:0:0,-13.2453,-140.303	0/0:80:80,0:80:2843:0:0:0,-24.0824,-256.109	0/1:33:19,14:19:675:14:500:-35.4022,0,-51.143	0/0:21:20,1:20:689:1:36:0,-2.72335,-58.7303	0/1:26:14,12:14:492:12:432:-31.3944,0,-36.7856	0/0:87:87,0:87:3068:0:0:0,-26.1896,-276.35	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:37:18,19:18:601:19:684:-50.7522,0,-43.2665	0/0:55:55,0:55:1913:0:0:0,-16.5566,-172.443	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/1:60:30,30:30:1063:30:1062:-77.8282,0,-77.919	0/1:49:15,34:15:506:34:1216:-94.9785,0,-31.1074	0/0:53:53,0:53:1861:0:0:0,-15.9546,-167.768	0/0:81:81,0:81:2842:0:0:0,-24.3834,-256.018
chr03	27877861	.	T	C	64148.3	PASS	AB=0.506321;ABP=3.58683;AC=137;AF=0.744565;AN=184;AO=3068;CIGAR=1X;DP=3892;DPB=3892;DPRA=42.7582;EPP=6665.09;EPPR=1785.79;GTI=2;LEN=1;MEANALT=1.03297;MQM=59.8996;MQMR=59.9562;NS=92;NUMALT=1;ODDS=0.594273;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108220;QR=29390;RO=821;RPL=3068;RPP=6665.09;RPPR=1785.79;RPR=0;RUN=1;SAF=3068;SAP=6665.09;SAR=0;SRF=821;SRP=1785.79;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:8,12:8:288:12:424:-32.4752,0,-20.2444	0/1:44:25,19:25:900:19:663:-46.7481,0,-68.0757	0/1:71:37,33:37:1332:33:1184:-85.562,0,-98.8769	1/1:89:0,89:0:0:89:3169:-285.434,-26.7917,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:9:2,6:2:72:6:216:-17.1167,0,-4.14199	0/1:37:28,9:28:1000:9:320:-18.0042,0,-79.1773	0/1:33:26,7:26:936:7:252:-13.095,0,-74.6255	1/1:49:0,49:0:0:49:1734:-156.343,-14.7505,0	0/1:44:21,23:21:756:23:809:-59.883,0,-55.1219	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3825	0/1:49:24,25:24:852:25:868:-63.6649,0,-62.2499	1/1:45:0,45:0:0:45:1612:-145.364,-13.5464,0	1/1:36:0,36:0:0:36:1270:-114.6,-10.8371,0	0/1:61:28,33:28:1004:33:1171:-87.3338,0,-72.313	0/1:44:13,31:13:453:31:1058:-82.2291,0,-27.8543	0/1:16:7,9:7:248:9:309:-23.3242,0,-17.8477	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	0/1:20:6,14:6:216:14:492:-38.5917,0,-13.7699	1/1:75:0,75:0:0:75:2654:-239.101,-22.5773,0	1/1:129:0,129:0:0:129:4551:-409.739,-38.8329,0	1/1:27:0,27:0:0:27:951:-85.8867,-8.12781,0	0/1:35:20,15:20:716:15:540:-38.4005,0,-54.2317	0/1:42:8,34:8:288:34:1207:-96.292,0,-13.6241	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:74:39,35:39:1396:35:1260:-91.4293,0,-103.656	1/1:102:0,102:0:0:102:3588:-323.13,-30.7051,0	0/1:12:3,9:3:108:9:315:-25.0749,0,-6.46281	1/1:76:0,76:0:0:76:2691:-242.436,-22.8783,0	1/1:77:0,77:0:0:77:2685:-241.892,-23.1793,0	1/1:68:0,68:0:0:68:2409:-217.066,-20.47,0	1/1:6:0,6:0:0:6:208:-19.0585,-1.80618,0	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:17:0,17:0:0:17:601:-54.4184,-5.11751,0	1/1:102:0,102:0:0:102:3565:-321.039,-30.7051,0	0/1:29:11,18:11:392:18:621:-47.3741,0,-26.8902	0/1:30:11,19:11:381:19:653:-50.0584,0,-25.5897	.:.:.:.:.:.:.:.	0/1:68:35,33:35:1260:33:1161:-84.3241,0,-93.2354	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:39:16,23:16:576:23:803:-60.8482,0,-40.4348	0/1:19:12,7:12:432:7:248:-16.9446,0,-33.5016	1/1:21:0,21:0:0:21:739:-66.8324,-6.32163,0	1/1:48:0,48:0:0:48:1690:-152.385,-14.4494,0	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	1/1:50:0,50:0:0:50:1764:-159.041,-15.0515,0	1/1:27:0,27:0:0:27:954:-86.1724,-8.12781,0	1/1:50:0,50:0:0:50:1776:-160.122,-15.0515,0	1/1:35:0,35:0:0:35:1240:-111.904,-10.5361,0	.:.:.:.:.:.:.:.	0/1:56:36,20:36:1292:20:704:-46.8269,0,-99.7261	0/1:32:8,24:8:288:24:855:-67.1456,0,-16.6344	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:72:35,37:35:1260:37:1316:-97.0642,0,-92.0313	0/1:17:5,12:5:180:12:428:-33.7413,0,-11.4346	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:7:6,1:6:216:1:34:-1.2917,0,-17.6833	0/1:39:24,15:24:864:15:528:-36.1112,0,-66.3424	0/1:70:30,40:30:1058:40:1402:-105.403,0,-74.4575	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:55:0,55:0:0:55:1936:-174.514,-16.5567,0	1/1:53:3,50:3:93:50:1757:-149.736,-7.27845,0	1/1:17:0,17:0:0:17:590:-53.4065,-5.11751,0	1/1:83:0,83:0:0:83:2937:-264.544,-24.9855,0	0/1:90:50,39:50:1800:39:1391:-98.3368,0,-135.131	1/1:24:0,24:0:0:24:833:-75.2847,-7.22472,0	1/1:51:0,51:0:0:51:1804:-162.642,-15.3525,0	1/1:29:0,29:0:0:29:1017:-91.8398,-8.72987,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:93:0,93:0:0:93:3287:-296.047,-27.9958,0	0/1:24:9,15:9:316:15:524:-40.2649,0,-21.5541	1/1:90:0,90:0:0:90:3207:-288.835,-27.0927,0	0/1:96:41,55:41:1476:55:1956:-147.417,0,-104.237	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:67:0,67:0:0:67:2396:-215.895,-20.169,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:58:27,31:27:968:31:1108:-82.5713,0,-69.9776	1/1:46:0,46:0:0:46:1599:-144.169,-13.8474,0	1/1:80:0,80:0:0:80:2856:-257.278,-24.0824,0	0/1:34:15,19:15:540:19:665:-49.9378,0,-38.7015	1/1:21:0,21:0:0:21:722:-65.295,-6.32163,0	0/1:26:12,14:12:424:14:500:-37.5094,0,-30.6696	1/1:89:0,89:0:0:89:3119:-280.937,-26.7917,0	0/1:14:10,4:10:360:4:140:-8.73016,0,-28.5299	0/1:38:19,19:19:684:19:672:-49.3677,0,-50.4512	1/1:55:0,55:0:0:55:1927:-173.704,-16.5567,0	0/1:17:12,5:12:432:5:172:-10.7005,0,-34.1037	0/1:60:29,31:29:1040:31:1080:-79.444,0,-75.8526	0/1:49:34,15:34:1201:15:489:-29.5693,0,-93.6256	1/1:53:0,53:0:0:53:1850:-166.776,-15.9546,0	1/1:83:0,83:0:0:83:2896:-260.876,-24.9855,0
chr03	28021628	.	T	C	122380	PASS	AB=0.498834;ABP=3.04573;AC=142;AF=0.755319;AN=188;AO=5693;CIGAR=1X;DP=7225;DPB=7225;DPRA=0;EPP=12174.9;EPPR=3275.62;GTI=2;LEN=1;MEANALT=1.01064;MQM=59.9859;MQMR=59.9909;NS=94;NUMALT=1;ODDS=4.22815;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203116;QR=54879;RO=1531;RPL=5671;RPP=12174.9;RPPR=3275.62;RPR=22;RUN=1;SAF=0;SAP=12365.2;SAR=5693;SRF=0;SRP=3327.53;SRR=1531;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:16,12:16:572:12:424:-30.0676,0,-43.3846	0/1:144:65,79:65:2304:79:2816:-210.331,0,-164.271	0/1:72:39,33:39:1400:33:1163:-83.302,0,-104.625	1/1:117:1,116:1:36:116:4151:-370.174,-31.6222,0	0/1:57:30,27:30:1080:27:947:-68.3842,0,-80.3545	0/1:46:24,22:24:864:22:792:-57.7583,0,-64.2352	0/1:81:45,36:45:1616:36:1292:-92.2003,0,-121.347	0/1:116:54,62:54:1932:62:2202:-163.525,0,-139.237	1/1:92:1,91:1:36:91:3250:-289.122,-24.0965,0	0/1:92:49,43:49:1764:43:1536:-110.838,0,-131.349	0/1:30:18,12:18:640:12:432:-30.1903,0,-48.8984	0/1:47:21,26:21:756:26:932:-70.0505,0,-54.2188	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	0/1:38:19,19:19:684:19:684:-50.4512,0,-50.4512	0/1:43:25,18:25:896:18:620:-43.1749,0,-68.0161	0/1:38:16,22:16:576:22:788:-59.8057,0,-40.7358	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:23:16,7:16:572:7:252:-16.1053,0,-44.8897	1/1:96:0,96:0:0:96:3424:-308.373,-28.8989,0	1/1:80:0,79:0:0:79:2818:-253.499,-23.7814,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	0/1:94:50,44:50:1788:44:1572:-113.475,0,-132.906	0/1:94:36,58:36:1292:58:2071:-158.363,0,-88.2823	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	0/1:200:90,110:90:3221:110:3940:-294.586,0,-229.904	1/1:121:0,121:0:0:121:4335:-390.325,-36.4246,0	0/1:15:10,5:10:356:5:167:-10.843,0,-27.8658	1/1:136:0,136:0:0:136:4865:-438.003,-40.9401,0	1/1:127:0,127:0:0:127:4544:-408.755,-38.2308,0	1/1:132:1,131:1:36:131:4681:-417.853,-36.1377,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:134:0,134:0:0:134:4752:-427.841,-40.338,0	1/1:123:0,123:0:0:123:4395:-395.723,-37.0267,0	0/1:152:81,71:81:2908:71:2521:-181.385,0,-216.198	0/1:35:21,14:21:756:14:495:-34.347,0,-57.8312	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:98:59,39:59:2124:39:1400:-96.7982,0,-161.927	1/1:80:0,80:0:0:80:2837:-255.568,-24.0824,0	0/1:133:52,81:52:1864:81:2880:-219.4,0,-128.002	0/1:79:37,42:37:1332:42:1512:-112.593,0,-96.401	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	1/1:90:0,90:0:0:90:3220:-290.023,-27.0927,0	1/1:86:0,86:0:0:86:3074:-276.889,-25.8886,0	1/1:148:0,148:0:0:148:5286:-475.876,-44.5524,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:111:0,111:0:0:111:3965:-357.041,-33.4143,0	1/1:57:0,57:0:0:57:2037:-183.6,-17.1587,0	1/1:132:0,132:0:0:132:4728:-425.678,-39.736,0	0/1:76:41,35:41:1476:35:1252:-90.1068,0,-110.258	0/1:46:30,16:30:1076:16:572:-37.966,0,-83.3055	1/1:309:9,300:9:324:300:10725:-935.643,-63.5124,0	0/1:87:35,52:35:1260:52:1872:-142.569,0,-87.5159	0/1:44:23,21:23:824:21:736:-53.315,0,-61.238	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:171:8,163:8:288:163:5769:-493.059,-25.2087,0	0/1:37:18,19:18:640:19:680:-50.3911,0,-46.7912	0/1:64:37,27:37:1320:27:952:-66.7274,0,-99.836	1/1:113:0,113:0:0:113:4035:-363.338,-34.0164,0	1/1:115:0,115:0:0:115:4096:-368.824,-34.6185,0	1/1:101:0,101:0:0:101:3596:-323.847,-30.404,0	1/1:61:1,60:1:36:60:2160:-191.068,-14.7646,0	1/1:48:0,48:0:0:48:1701:-153.375,-14.4494,0	1/1:199:0,199:0:0:199:7120:-640.857,-59.905,0	0/1:103:58,45:58:2067:45:1608:-114.003,0,-155.294	1/1:13:0,13:0:0:13:445:-40.3754,-3.91339,0	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:188:5,183:5:180:183:6518:-570.154,-40.0416,0	1/1:85:0,85:0:0:85:3027:-272.661,-25.5876,0	0/1:49:23,26:23:828:26:928:-69.0878,0,-60.0936	0/1:83:31,52:31:1116:52:1843:-141.163,0,-75.7662	0/1:112:59,53:59:2112:53:1900:-137.563,0,-156.634	0/1:64:30,34:30:1072:34:1215:-90.3898,0,-77.5265	1/1:76:0,76:0:0:76:2711:-244.234,-22.8783,0	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	0/1:88:39,49:39:1404:49:1733:-129.762,0,-100.169	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:117:0,117:0:0:117:4160:-374.584,-35.2205,0	0/1:66:33,33:33:1184:33:1176:-86.2798,0,-87.0003	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:61:31,30:31:1116:30:1063:-77.618,0,-82.3889	1/1:92:0,92:0:0:92:3272:-294.7,-27.6948,0	0/1:55:30,25:30:1067:25:891:-63.9521,0,-79.7846	0/1:54:27,27:27:972:27:955:-70.0092,0,-71.5341	1/1:41:0,41:0:0:41:1460:-131.695,-12.3422,0	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:44:21,23:21:752:23:824:-61.238,0,-54.7609	0/1:62:34,28:34:1208:28:999:-71.5613,0,-90.3622	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0
chr03	28021638	.	G	A	25249.9	PASS	AB=0.5;ABP=3.0103;AC=46;AF=0.244681;AN=188;AO=1545;CIGAR=1X;DP=7301;DPB=7301;DPRA=0.984256;EPP=3357.94;EPPR=12465.1;GTI=2;LEN=1;MEANALT=1.0566;MQM=59.9909;MQMR=59.9871;NS=94;NUMALT=1;ODDS=4.34564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55105;QR=205843;RO=5751;RPL=1545;RPP=3357.94;RPPR=12465.1;RPR=0;RUN=1;SAF=0;SAP=3357.94;SAR=1545;SRF=0;SRP=12491.1;SRR=5751;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:13,16:13:464:16:576:-43.4451,0,-33.3676	0/1:143:79,63:79:2840:63:2237:-158.634,0,-212.879	0/1:73:35,38:35:1256:38:1368:-101.446,0,-91.3701	0/0:116:116,0:116:4145:0:0:0,-34.9195,-373.232	0/1:59:28,31:28:1000:31:1101:-81.6376,0,-72.5546	0/1:47:23,24:23:828:24:864:-63.9342,0,-60.6957	0/1:84:39,45:39:1391:45:1579:-117.109,0,-100.202	0/1:115:61,54:61:2176:54:1927:-139.088,0,-161.488	0/0:97:96,1:96:3440:1:36:0,-25.6016,-306.215	0/1:90:42,48:42:1508:48:1713:-127.361,0,-108.922	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/1:46:26,20:26:932:20:716:-50.9203,0,-70.3515	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:39:19,20:19:684:20:720:-53.3886,0,-50.1502	0/1:43:18,25:18:648:25:892:-67.6554,0,-45.6791	0/1:38:22,16:22:788:16:570:-40.1933,0,-59.8057	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/1:24:7,17:7:252:17:608:-47.8273,0,-15.8042	0/0:96:96,0:96:3399:0:0:0,-28.8989,-306.122	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:93:41,52:41:1476:52:1853:-139.052,0,-105.14	0/1:97:59,38:59:2105:38:1346:-92.237,0,-160.518	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:203:112,91:112:3952:91:3227:-229.542,0,-294.76	0/0:126:126,0:126:4490:0:0:0,-37.9298,-404.267	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3376	0/0:137:137,0:137:4889:0:0:0,-41.2411,-440.162	0/0:135:135,0:135:4843:0:0:0,-40.639,-435.395	0/0:133:132,1:132:4748:1:36:0,-36.4387,-423.877	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.234	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.372	0/1:155:72,83:72:2564:83:2926:-216.912,0,-184.348	0/1:36:13,23:13:468:23:824:-63.6462,0,-31.6226	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:100:40,60:40:1432:60:2152:-163.844,0,-99.0746	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/1:135:83,51:83:2988:51:1830:-124.43,0,-228.601	0/1:79:42,37:42:1508:37:1324:-95.6807,0,-112.233	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:92:91,1:91:3256:1:36:0,-24.0965,-289.663	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:151:151,0:151:5401:0:0:0,-45.4555,-486.219	0/0:83:83,0:83:2966:0:0:0,-24.9855,-267.172	0/0:110:109,0:109:3905:0:0:0,-32.8123,-351.281	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:136:136,0:136:4876:0:0:0,-40.9401,-438.992	0/1:77:36,41:36:1284:41:1450:-107.613,0,-92.6841	0/1:46:16,30:16:572:30:1076:-83.3055,0,-37.966	0/0:309:300,9:300:10756:9:324:0,-63.5124,-938.245	0/1:87:51,36:51:1832:36:1273:-88.6813,0,-138.971	0/1:45:22,23:22:788:23:824:-60.937,0,-57.6984	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:172:164,8:164:5865:8:288:0,-25.5098,-501.693	0/1:37:20,17:20:720:17:597:-42.918,0,-53.9907	0/1:66:29,37:29:1026:37:1328:-99.9543,0,-72.7833	0/0:113:113,0:113:4017:0:0:0,-34.0164,-361.717	0/0:118:118,0:118:4208:0:0:0,-35.5215,-378.899	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/0:62:61,1:61:2192:1:36:0,-15.0656,-193.947	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/0:200:200,0:200:7159:0:0:0,-60.206,-644.366	0/1:106:46,60:46:1639:60:2129:-159.968,0,-115.889	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:62:61,0:61:2196:0:0:0,-18.3628,-197.693	0/0:187:181,6:181:6454:6:216:0,-36.5021,-561.158	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.628	0/1:52:28,24:28:1004:24:864:-62.429,0,-75.0223	0/1:85:53,32:53:1900:32:1141:-77.4118,0,-145.69	0/1:113:53,60:53:1904:60:2125:-157.501,0,-137.621	0/1:64:34,30:34:1216:30:1065:-76.8947,0,-90.4806	0/0:76:76,0:76:2723:0:0:0,-22.8783,-245.312	0/1:21:4,17:4:144:17:608:-48.7304,0,-6.99199	0/1:89:49,40:49:1764:40:1436:-102.746,0,-132.252	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:117:117,0:117:4150:0:0:0,-35.2205,-373.683	0/1:66:33,33:33:1179:33:1184:-87.0003,0,-86.5492	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:61:30,31:30:1072:31:1112:-82.0285,0,-78.4296	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/1:55:24,30:24:860:30:1080:-81.0428,0,-61.2503	0/1:53:27,26:27:968:26:936:-68.5967,0,-71.4828	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/1:44:23,21:23:828:21:752:-54.7609,0,-61.5988	0/1:65:28,37:28:1004:37:1332:-100.615,0,-71.1089	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299
chr03	28021780	.	A	C	23925.9	PASS	AB=0.492166;ABP=4.5753;AC=51;AF=0.277174;AN=184;AO=1463;CIGAR=1X;DP=6400;DPB=6400;DPRA=0.867527;EPP=3179.87;EPPR=10680.2;GTI=5;LEN=1;MEANALT=1;MQM=59.9597;MQMR=59.9976;NS=92;NUMALT=1;ODDS=0.821954;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52107;QR=176017;RO=4933;RPL=0;RPP=3179.87;RPPR=10671.5;RPR=1463;RUN=1;SAF=0;SAP=3179.87;SAR=1463;SRF=3;SRP=10688.8;SRR=4930;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:18,7:18:644:7:248:-15.1384,0,-50.7648	0/1:93:47,46:47:1676:46:1644:-120.253,0,-123.131	0/1:89:48,41:48:1697:41:1463:-105.174,0,-126.222	0/0:177:177,0:177:6326:0:0:0,-53.2823,-569.432	0/1:43:19,24:19:684:24:852:-64.0561,0,-48.946	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/1:101:49,52:49:1725:52:1868:-137.995,0,-125.128	0/1:122:59,63:59:2120:63:2234:-164.597,0,-154.343	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:73:33,40:33:1184:40:1428:-106.773,0,-84.8931	0/1:29:9,20:9:320:20:716:-56.0378,0,-20.4125	0/1:70:26,44:26:928:44:1568:-120.34,0,-62.7662	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:50:26,24:26:923:24:856:-62.3096,0,-68.3353	0/1:38:18,20:18:648:20:703:-52.1544,0,-47.2127	0/1:44:23,21:23:820:21:756:-55.1219,0,-60.8772	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:37:26,11:26:936:11:396:-24.8446,0,-73.4214	0/0:157:157,0:157:5572:0:0:0,-47.2617,-501.607	0/0:110:110,0:110:3931:0:0:0,-33.1133,-353.982	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.709	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	0/1:43:27,16:27:972:16:572:-38.8691,0,-74.8536	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:222:116,106:116:4151:106:3773:-272.884,0,-306.944	0/0:120:120,0:120:4273:0:0:0,-36.1236,-384.749	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/0:128:127,0:127:4513:0:0:0,-38.2308,-405.977	0/0:103:103,0:103:3662:0:0:0,-31.0061,-329.785	0/0:75:75,0:75:2658:0:0:0,-22.5772,-239.464	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:188:187,0:187:6696:0:0:0,-56.2926,-602.356	0/1:147:81,66:81:2904:66:2350:-167.507,0,-217.344	0/1:32:17,15:17:608:15:532:-38.5801,0,-45.4191	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:115:67,48:67:2369:48:1681:-116.956,0,-178.849	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:73:36,37:36:1292:37:1328:-97.847,0,-94.6086	0/1:47:23,24:23:828:24:849:-62.5794,0,-60.6957	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:157:157,0:157:5623:0:0:0,-47.2617,-506.19	0/0:109:107,2:107:3832:2:72:0,-25.9755,-338.24	0/0:95:95,0:95:3349:0:0:0,-28.5978,-301.627	0/0:139:137,0:137:4886:0:0:0,-41.2411,-439.533	.:.:.:.:.:.:.:.	0/1:141:72,69:72:2563:69:2451:-178.399,0,-188.475	0/1:31:21,10:21:752:10:356:-23.0493,0,-58.6743	0/0:18:17,1:17:604:1:36:0,-1.82026,-51.0923	0/1:77:42,35:42:1495:35:1256:-90.166,0,-111.664	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:39:21,18:21:756:18:648:-46.9117,0,-56.6271	0/1:90:44,46:44:1572:46:1632:-120.066,0,-114.679	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:158:158,0:158:5625:0:0:0,-47.5627,-506.373	0/0:152:149,3:149:5306:3:108:0,-35.6814,-467.601	0/0:51:51,0:51:1827:0:0:0,-15.3525,-164.71	0/0:52:52,0:52:1834:0:0:0,-15.6536,-165.339	0/0:80:77,3:77:2733:3:108:0,-14.0072,-236.137	0/1:105:41,64:41:1468:64:2292:-174.933,0,-100.808	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:78:78,0:78:2774:0:0:0,-23.4803,-249.901	0/1:16:7,9:7:248:9:320:-24.3259,0,-17.8477	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.989	0/1:79:34,45:34:1220:45:1585:-119.157,0,-86.3254	0/1:69:40,29:40:1424:29:1040:-73.1433,0,-107.686	0/1:141:63,78:63:2252:78:2766:-206.735,0,-160.498	0/1:61:23,38:23:813:38:1349:-103.345,0,-55.1263	0/0:89:89,0:89:3183:0:0:0,-26.7917,-286.693	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:75:38,37:38:1353:37:1302:-94.9026,0,-99.4911	0/0:80:79,1:79:2809:1:36:0,-20.4841,-249.45	0/0:182:180,2:180:6444:2:72:0,-47.9507,-573.21	0/1:107:58,49:58:2071:49:1760:-126.473,0,-154.45	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:75:45,30:45:1616:30:1051:-72.3224,0,-123.153	0/0:114:113,1:113:4022:1:36:0,-30.7191,-358.569	0/1:37:22,15:22:784:15:536:-37.4367,0,-59.7458	0/1:73:41,32:41:1451:32:1139:-80.8432,0,-108.91	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:20:9,11:9:320:11:383:-28.7826,0,-23.1218	0/1:68:31,37:31:1107:37:1328:-99.3522,0,-79.4701	0/1:42:15,27:15:532:27:972:-75.1546,0,-35.5698	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161
chr03	28021811	.	AGGT	GGGT,GGGG	138257	PASS	AB=0.501171,0.492807;ABP=3.0459,4.35358;AC=133,51;AF=0.722826,0.277174;AN=184;AO=4978,1495;CIGAR=1X3M,1X2M1X;DP=6517;DPB=6519;DPRA=28.9422,0.908437;EPP=10365.7,3094.9;EPPR=5.18177;GTI=5;LEN=1,4;MEANALT=2.04444,2.39655;MQM=59.994,59.9512;MQMR=60;NS=92;NUMALT=2;ODDS=0.765569;PAIRED=0,0;PAIREDR=0;PAO=3.5,3.5;PQA=105,105;PQR=0;PRO=0;QA=174597,51349;QR=28;RO=1;RPL=4926,1477;RPP=10365.7,3094.9;RPPR=5.18177;RPR=52,18;RUN=1,1;SAF=0,0;SAP=10812.6,3249.36;SAR=4978,1495;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,17,7:0:0:17,7:588,230:-66.7092,-18.9152,-13.7977,-48.1274,0,-46.0202	1/2:95:0,46,47:0:0:46,47:1640,1648:-267.842,-134.154,-120.306,-133.734,0,-119.586	1/2:93:0,50,43:0:0:50,43:1756,1449:-260.684,-117.755,-102.704,-143.272,0,-130.328	1/1:178:0,178,0:0:0:178,0:6250,0:-562.608,-53.5833,0,-562.608,-53.5833,-562.608	1/2:44:0,20,24:0:0:20,24:692,827:-123.755,-67.5213,-61.5007,-56.5789,0,-49.3541	1/2:18:0,13,5:0:0:13,5:460,167:-51.3367,-13.8541,-9.94074,-37.822,0,-36.3168	1/2:100:0,48,52:0:0:48,52:1647,1805:-280.799,-147.079,-132.63,-134.065,0,-118.412	1/2:127:0,60,65:0:0:60,65:2074,2210:-347.777,-179.251,-161.189,-168.519,0,-148.952	1/1:45:0,45,0:0:0:45,0:1583,0:-142.76,-13.5464,0,-142.76,-13.5464,-142.76	1/2:74:0,34,40:0:0:34,40:1191,1371:-208.55,-111.637,-101.402,-97.2593,0,-85.2181	1/2:30:0,9,21:0:0:9,21:324,733:-86.409,-59.969,-57.2597,-26.7966,0,-20.475	1/2:74:0,27,47:0:0:27,47:917,1580:-202.711,-128.339,-120.211,-74.7106,0,-60.5622	1/1:39:0,39,0:0:0:39,0:1396,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/1:46:0,46,0:0:0:46,0:1644,0:-148.249,-13.8474,0,-148.249,-13.8474,-148.249	1/2:51:0,26,25:0:0:26,25:924,868:-146.21,-70.9098,-63.083,-75.6509,0,-68.1251	1/2:38:0,18,20:0:0:18,20:632,678:-106.759,-55.3159,-49.8973,-51.7882,0,-45.7676	1/2:45:0,24,21:0:0:24,21:828,710:-125.16,-57.8926,-50.6679,-67.6085,0,-61.2869	1/1:45:0,45,0:0:0:45,0:1583,0:-142.701,-13.5464,0,-142.701,-13.5464,-142.701	1/2:37:0,26,11:0:0:26,11:902,373:-103.911,-30.5858,-22.759,-73.6661,0,-70.3548	1/1:159:0,155,2:0:0:155,2:5440,55:-489.407,-46.6597,0,-485.06,-42.3696,-484.458	1/1:113:0,112,0:0:0:112,0:3905,0:-351.342,-33.7154,0,-351.342,-33.7154,-351.342	1/1:88:0,88,0:0:0:88,0:3054,0:-275.095,-26.4906,0,-275.095,-26.4906,-275.095	1/2:21:0,6,15:0:0:6,15:216,522:-60.4214,-42.7935,-40.9873,-17.9843,0,-13.4689	1/2:40:0,25,15:0:0:25,15:892,512:-114.616,-41.8892,-34.3634,-73.0739,0,-68.5585	1/1:52:0,51,0:0:0:51,0:1770,0:-159.348,-15.3525,0,-159.348,-15.3525,-159.348	1/2:228:0,117,108:0:0:117,108:4129,3666:-633.557,-297.325,-262.105,-336.257,0,-303.746	1/1:123:0,123,0:0:0:123,0:4295,0:-386.737,-37.0267,0,-386.737,-37.0267,-386.737	1/2:22:0,10,12:0:0:10,12:360,412:-63.1784,-33.7967,-30.7864,-29.734,0,-26.1216	1/1:128:0,128,0:0:0:128,0:4498,0:-404.994,-38.5318,0,-404.994,-38.5318,-404.994	1/1:108:0,108,0:0:0:108,0:3815,0:-343.552,-32.5112,0,-343.552,-32.5112,-343.552	1/1:74:0,74,0:0:0:74,0:2575,0:-232.003,-22.2762,0,-232.003,-22.2762,-232.003	1/1:4:0,4,0:0:0:4,0:127,0:-11.7444,-1.20412,0,-11.7444,-1.20412,-11.7444	1/2:7:0,6,1:0:0:6,1:208,35:-20.1011,-3.1976,-1.39142,-17.2529,0,-16.9519	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	.:.:.:.:.:.:.:.	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:186:0,186,0:0:0:186,0:6474,0:-582.765,-55.9916,0,-582.765,-55.9916,-582.765	1/2:152:0,85,64:0:0:85,64:2995,2233:-425.489,-181.641,-156.054,-243.866,0,-224.601	1/2:34:0,18,15:0:0:18,15:629,496:-91.3734,-40.1946,-34.776,-51.2695,0,-46.754	2/2:1:0,0,1:0:0:0,1:0,35:-3.49863,-3.49863,-3.49863,-0.30103,-0.30103,0	1/2:119:0,67,50:0:0:67,50:2380,1723:-333.939,-139.998,-119.829,-193.983,0,-178.932	1/1:31:0,31,0:0:0:31,0:1085,0:-97.957,-9.33193,0,-97.957,-9.33193,-97.957	1/2:73:0,35,38:0:0:35,38:1244,1276:-205.08,-103.697,-93.1608,-101.729,0,-90.2895	1/2:48:0,22,26:0:0:22,26:784,903:-137.667,-73.7577,-67.135,-64.2613,0,-56.4345	1/1:52:0,48,1:0:0:48,1:1704,27:-153.376,-14.4494,0,-151.249,-12.3182,-150.948	1/1:44:0,44,0:0:0:44,0:1552,0:-139.972,-13.2453,0,-139.972,-13.2453,-139.972	1/1:83:0,81,0:0:0:81,0:2861,0:-257.495,-24.3834,0,-257.495,-24.3834,-257.495	1/1:159:0,159,0:0:0:159,0:5607,0:-504.76,-47.8638,0,-504.76,-47.8638,-504.76	1/1:108:0,105,2:0:0:105,2:3691,72:-332.074,-31.6082,0,-326.199,-25.6601,-325.597	1/1:94:0,93,0:0:0:93,0:3243,0:-291.738,-27.9958,0,-291.738,-27.9958,-291.738	1/1:141:0,138,0:0:0:138,0:4781,0:-430.101,-41.5421,0,-430.101,-41.5421,-430.101	.:.:.:.:.:.:.:.	1/2:141:0,70,71:0:0:70,71:2429,2415:-393.689,-196.237,-175.165,-197.795,0,-176.422	1/2:32:0,22,10:0:0:22,10:776,349:-91.9255,-28.7361,-22.1134,-63.5395,0,-60.5292	1/1:17:0,16,1:0:0:16,1:545,23:-49.1342,-4.81648,0,-47.3718,-2.8176,-47.0707	1/2:82:0,45,37:0:0:45,37:1566,1284:-232.058,-104.723,-91.1767,-127.683,0,-116.545	1/2:9:0,5,4:0:0:5,4:176,142:-26.2515,-11.9252,-10.42,-14.6799,0,-13.4757	2/2:4:0,0,4:0:0:0,4:0,138:-12.7598,-12.7598,-12.7598,-1.20412,-1.20412,0	1/2:10:0,7,3:0:0:7,3:2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chr03	28069676	.	T	C	1156.32	PASS	AB=0.49145;ABP=6.72349;AC=49;AF=0.260638;AN=188;AO=2912;CIGAR=1X;DP=11470;DPB=11470;DPRA=1.03898;EPP=33.4378;EPPR=21.6471;GTI=21;LEN=1;MEANALT=1.01562;MQM=10.6645;MQMR=11.2469;NS=94;NUMALT=1;ODDS=0.767161;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103300;QR=305306;RO=8557;RPL=5;RPP=6282.98;RPPR=18445.6;RPR=2907;RUN=1;SAF=1562;SAP=36.5249;SAR=1350;SRF=4430;SRP=26.3083;SRR=4127;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:20,21:20:716:21:731:-8.15856,0,-7.81306	0/1:116:53,63:53:1888:63:2244:-27.3886,0,-17.6813	0/1:94:46,48:46:1620:48:1716:-19.4529,0,-19.3366	0/0:133:133,0:133:4784:0:0:0,-40.037,-135.019	0/1:65:37,28:37:1328:28:980:-7.82812,0,-17.3982	0/1:64:41,23:41:1468:23:824:-3.40574,0,-22.5519	0/1:117:62,55:62:2192:55:1952:-17.8336,0,-27.8662	0/1:142:68,74:68:2436:74:2627:-30.2501,0,-29.284	0/0:79:79,0:79:2809:0:0:0,-23.7814,-78.1859	0/1:113:58,55:58:2088:55:1945:-15.6816,0,-24.8017	0/1:178:79,99:79:2832:99:3536:-36.0581,0,-25.6342	0/1:234:127,107:127:4541:107:3789:-34.6972,0,-56.8534	0/0:239:239,0:239:8452:0:0:0,-71.9462,-243.556	0/0:236:236,0:236:8429:0:0:0,-71.0431,-240.85	0/1:206:106,100:106:3796:100:3540:-30.8015,0,-42.9958	0/1:170:98,72:98:3499:72:2556:-20.0276,0,-46.5451	0/1:245:125,120:125:4460:120:4262:-44.5393,0,-51.0213	0/0:243:243,0:243:8724:0:0:0,-73.1503,-240.576	0/1:163:86,77:86:3092:77:2755:-27.2629,0,-36.53	0/0:125:125,0:125:4448:0:0:0,-37.6287,-124.655	0/0:156:156,0:156:5562:0:0:0,-46.9607,-160.811	0/0:26:26,0:26:928:0:0:0,-7.82678,-24.2854	0/1:56:27,29:27:953:29:1004:-9.45157,0,-10.1865	0/1:61:36,25:36:1288:25:880:-6.28014,0,-18.2413	0/0:57:57,0:57:2010:0:0:0,-17.1587,-58.1808	0/1:182:104,78:104:3689:78:2753:-15.4041,0,-52.5115	0/0:96:96,0:96:3440:0:0:0,-28.8989,-99.2122	0/1:99:48,51:48:1720:51:1810:-20.541,0,-18.2186	0/0:131:129,2:129:4617:2:68:0,-37.5382,-121.171	0/0:58:58,0:58:2080:0:0:0,-17.4597,-58.6274	0/0:109:108,1:108:3852:1:36:0,-31.8132,-110.932	0/0:3:3,0:3:108:0:0:0,-0.90309,-3.26247	0/1:12:8,4:8:288:4:144:-0.452969,0,-4.40829	0/1:3:2,1:2:72:1:36:-0.195648,0,-1.37384	0/0:9:9,0:9:324:0:0:0,-2.70927,-9.10037	0/0:9:9,0:9:324:0:0:0,-2.70927,-9.28201	0/0:465:465,0:465:16655:0:0:0,-139.979,-443.007	0/1:55:27,28:27:972:28:993:-11.1179,0,-11.0627	0/1:219:113,106:113:4007:106:3779:-40.7866,0,-45.1201	0/1:4:2,2:2:72:2:72:-0.883481,0,-0.978145	0/1:131:76,55:76:2724:55:1947:-15.1341,0,-37.3476	0/0:124:123,1:123:4377:1:36:0,-36.229,-121.913	0/1:124:71,53:71:2533:53:1836:-14.4119,0,-35.6559	0/1:220:114,106:114:4073:106:3767:-31.5906,0,-47.2144	0/0:170:170,0:170:6069:0:0:0,-51.1751,-167.185	0/0:57:57,0:57:2044:0:0:0,-17.1587,-54.3131	0/0:68:68,0:68:2414:0:0:0,-20.47,-68.6467	0/0:114:114,0:114:4045:0:0:0,-34.3174,-117.409	0/0:61:61,0:61:2192:0:0:0,-18.3628,-60.6971	0/0:108:107,1:107:3832:1:36:0,-31.5122,-108.334	0/0:125:125,0:125:4457:0:0:0,-37.6287,-117.392	0/0:7:7,0:7:252:0:0:0,-2.10721,-7.21406	0/1:119:59,60:59:2120:60:2117:-23.5888,0,-22.8973	0/0:35:26,9:26:924:9:324:0,-2.34409,-18.6214	1/1:5:1,4:1:36:4:144:-3.06631,-0.506131,0	0/1:109:47,62:47:1688:62:2197:-28.2064,0,-14.4904	0/1:44:22,22:22:788:22:788:-6.63383,0,-8.70758	0/0:4:4,0:4:144:0:0:0,-1.20412,-3.97309	0/1:15:6,9:6:216:9:320:-3.67516,0,-1.16197	0/1:81:41,40:41:1472:40:1417:-14.9742,0,-16.3575	0/1:232:100,132:100:3567:132:4727:-49.8308,0,-29.7223	0/1:9:5,4:5:176:4:144:-0.987101,0,-2.43485	0/0:68:68,0:68:2436:0:0:0,-20.47,-64.1117	0/0:111:110,1:110:3940:1:36:0,-32.4153,-107.067	0/0:58:57,1:57:2016:1:27:0,-16.3697,-55.8814	0/0:74:73,1:73:2616:1:36:0,-21.2772,-75.9765	0/0:150:147,3:147:5245:3:108:0,-42.3572,-147.758	0/1:89:33,56:33:1169:56:1980:-23.9158,0,-6.54547	0/0:104:103,1:103:3692:1:36:0,-30.2084,-102.202	0/0:77:76,1:76:2694:1:36:0,-22.0806,-74.3681	0/0:294:293,1:293:10483:1:36:0,-87.5038,-276.524	0/0:23:16,7:16:572:7:252:0,-0.347624,-9.44388	0/0:59:59,0:59:2080:0:0:0,-17.7608,-58.4843	0/1:84:49,35:49:1764:35:1241:-8.95552,0,-22.4676	0/1:179:87,92:87:3107:92:3249:-38.4095,0,-36.9148	0/1:137:72,65:72:2568:65:2315:-17.7395,0,-37.9745	0/1:77:42,35:42:1496:35:1252:-11.4473,0,-18.1853	0/0:99:99,0:99:3552:0:0:0,-29.802,-101.47	0/1:10:5,5:5:180:5:180:-2.04389,0,-1.67693	0/1:95:55,40:55:1957:40:1423:-11.2352,0,-27.1101	0/0:80:80,0:80:2876:0:0:0,-24.0824,-84.1703	0/0:191:191,0:191:6795:0:0:0,-57.4967,-189.148	0/1:269:127,142:127:4531:142:5031:-48.1768,0,-43.5297	0/0:176:176,0:176:6254:0:0:0,-52.9813,-171.508	0/1:276:146,130:146:5205:130:4631:-34.691,0,-62.7112	0/0:392:390,2:390:13848:2:72:0,-116.106,-393.745	0/1:130:75,55:75:2657:55:1968:-14.9986,0,-34.8244	0/1:204:101,103:101:3570:103:3654:-39.7571,0,-38.2762	0/0:200:199,1:199:7105:1:36:0,-59.207,-199.646	0/1:167:92,75:92:3281:75:2657:-24.9212,0,-42.5736	0/1:219:109,109:109:3877:109:3839:-42.4738,0,-44.1763	0/1:189:66,123:66:2342:123:4337:-54.383,0,-8.15551	0/0:61:60,1:60:2113:1:36:0,-17.3638,-59.9567	0/0:353:353,0:353:12579:0:0:0,-106.264,-353.44
chr03	28069682	.	T	C	3020.61	PASS	AB=0.496681;ABP=3.65895;AC=57;AF=0.303191;AN=188;AO=4547;CIGAR=1X;DP=11517;DPB=11517;DPRA=35.7453;EPP=12.776;EPPR=37.9886;GTI=16;LEN=1;MEANALT=1.03261;MQM=11.1902;MQMR=11.0656;NS=94;NUMALT=1;ODDS=0.956478;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161807;QR=249019;RO=6967;RPL=26;RPP=9652.15;RPPR=14820.6;RPR=4521;RUN=1;SAF=2369;SAP=20.4322;SAR=2178;SRF=3685;SRP=53.6299;SRR=3282;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:35,7:35:1244:7:248:0,-5.8862,-28.1358	0/0:117:90,27:90:3232:27:964:0,-9.13536,-63.8275	0/0:98:71,27:71:2528:27:922:0,-3.55816,-47.1693	0/1:133:72,61:72:2560:61:2171:-23.5054,0,-31.794	0/1:65:41,24:41:1468:24:856:-3.90995,0,-21.352	0/0:67:52,15:52:1836:15:525:0,-5.88536,-38.9103	0/0:112:89,23:89:3168:23:824:0,-9.51237,-62.5277	0/0:144:109,35:109:3899:35:1243:0,-5.5662,-71.0859	0/1:82:36,46:36:1284:46:1636:-19.2859,0,-12.6371	0/0:117:89,28:89:3185:28:985:0,-8.08388,-56.0048	0/0:181:137,44:137:4889:44:1576:0,-9.69455,-82.2228	0/0:237:164,73:164:5884:73:2589:0,-2.39241,-96.6038	0/1:245:118,127:118:4220:127:4526:-54.9519,0,-47.5173	0/1:242:115,127:115:4086:127:4529:-54.7679,0,-48.4311	0/0:208:157,51:157:5613:51:1823:0,-11.7256,-98.2792	0/1:164:104,60:104:3715:60:2125:-10.0357,0,-54.3743	0/0:248:186,62:186:6639:62:2228:0,-13.2323,-125.545	0/1:244:110,133:110:3932:133:4757:-54.2201,0,-41.0043	0/0:167:129,38:129:4619:38:1352:0,-14.4812,-94.0223	0/1:121:59,62:59:2101:62:2216:-25.8845,0,-22.0811	0/1:152:78,74:78:2796:74:2641:-28.1551,0,-36.2281	0/1:24:9,15:9:324:15:531:-6.53658,0,-1.60322	0/0:55:46,9:46:1656:9:324:0,-7.63812,-34.4297	0/0:58:41,17:41:1464:17:612:0,-0.449309,-24.267	0/1:55:32,23:32:1136:23:820:-5.93138,0,-16.8999	0/1:182:129,53:129:4586:53:1875:-0.0878983,0,-65.3447	0/1:95:48,47:48:1697:47:1672:-17.9767,0,-22.8513	0/0:97:68,29:68:2440:29:1044:0,-0.774134,-39.7318	0/1:132:56,76:56:2001:76:2719:-31.2106,0,-15.2744	0/1:57:31,26:31:1112:26:936:-8.66077,0,-14.5943	0/1:108:52,56:52:1864:56:2008:-25.6724,0,-21.27	0/1:3:1,2:1:36:2:72:-1.37384,0,-0.195648	0/0:14:10,4:10:360:4:144:0,-0.149225,-6.02399	0/0:3:3,0:3:108:0:0:0,-0.90309,-3.26247	0/1:9:4,5:4:144:5:172:-2.24968,0,-1.5404	0/1:9:5,4:5:180:4:144:-1.35606,0,-2.61994	0/1:465:208,257:208:7460:257:9143:-96.6806,0,-64.1865	0/0:54:44,10:44:1571:10:360:0,-6.25744,-34.4192	0/0:224:160,64:160:5728:64:2255:0,-6.68754,-101.527	0/1:3:2,1:2:72:1:36:-0.295293,0,-1.18451	0/1:129:86,43:86:3072:43:1519:-4.137,0,-47.4344	0/1:127:73,54:73:2619:54:1917:-15.9,0,-38.1135	0/0:128:95,33:95:3400:33:1179:0,-4.63026,-61.0382	0/0:222:167,55:167:5965:55:1968:0,-11.4322,-100.565	0/1:166:77,89:77:2753:89:3127:-36.7577,0,-28.0027	0/1:57:24,33:24:860:33:1150:-13.3979,0,-6.68211	0/1:68:26,42:26:932:42:1484:-19.8111,0,-6.24874	0/1:113:60,53:60:2148:53:1876:-19.5404,0,-30.2866	0/1:61:33,28:33:1188:28:1000:-9.61005,0,-14.2895	0/1:108:51,57:51:1823:57:2036:-26.9351,0,-18.1981	0/1:123:43,80:43:1540:80:2841:-35.8499,0,-5.6009	0/1:7:3,4:3:108:4:144:-2.1424,0,-0.969255	0/0:119:91,28:91:3243:28:975:0,-9.23704,-64.929	0/1:34:22,12:22:792:12:432:-0.83538,0,-12.9888	0/0:5:4,1:4:144:1:36:0,-0.506131,-3.06631	0/0:108:83,25:83:2961:25:892:0,-7.86464,-58.039	0/1:44:30,14:30:1068:14:504:-0.798645,0,-14.5447	0/0:4:4,0:4:144:0:0:0,-1.20412,-3.97309	0/0:15:12,3:12:432:3:108:0,-1.7182,-8.27321	0/0:78:60,18:60:2152:18:640:0,-6.29719,-42.8834	0/0:242:187,55:187:6716:55:1964:0,-17.0071,-119.798	0/0:9:8,1:8:288:1:36:0,-1.51089,-6.45843	0/1:67:28,39:28:996:39:1385:-15.5986,0,-7.53379	0/1:111:50,61:50:1796:61:2166:-26.3613,0,-15.7772	0/1:58:33,25:33:1179:25:877:-7.14401,0,-16.0824	0/1:72:33,39:33:1180:39:1361:-18.3284,0,-13.2316	0/1:151:63,88:63:2245:88:3135:-46.6063,0,-16.7356	0/0:94:72,22:72:2584:22:780:0,-5.89734,-44.0517	0/1:102:47,55:47:1680:55:1964:-23.513,0,-17.4938	0/1:76:31,45:31:1095:45:1604:-20.554,0,-9.58063	0/1:300:136,164:136:4842:164:5858:-61.2967,0,-44.6244	0/1:21:11,10:11:396:10:360:-3.58587,0,-4.30307	0/1:58:30,28:30:1080:28:1004:-9.25575,0,-13.6662	0/1:84:50,34:50:1781:34:1212:-6.81924,0,-24.5008	0/0:181:135,46:135:4814:46:1624:0,-5.57137,-88.0359	0/1:138:98,40:98:3509:40:1407:-5.22578,0,-50.8581	0/1:77:51,26:51:1828:26:926:-1.64564,0,-27.9883	0/1:102:47,55:47:1673:55:1959:-26.0411,0,-19.1233	0/1:10:6,4:6:216:4:140:-0.684704,0,-3.03276	0/1:94:63,31:63:2244:31:1104:-2.64125,0,-35.4179	0/1:75:45,30:45:1597:30:1080:-10.6334,0,-25.7983	0/1:191:103,88:103:3684:88:3141:-29.9733,0,-44.2758	0/0:272:198,74:198:7063:74:2617:0,-9.63724,-113.901	0/1:180:75,104:75:2692:104:3708:-46.3442,0,-20.3764	0/0:273:210,63:210:7544:63:2243:0,-17.571,-132.558	0/1:399:197,202:197:7047:202:7192:-87.6292,0,-79.8233	0/0:131:90,41:90:3193:41:1458:0,-0.682521,-51.8338	0/0:202:150,52:150:5364:52:1851:0,-11.8964,-101.127	0/1:198:87,111:87:3105:111:3971:-48.6199,0,-32.1062	0/1:167:111,55:111:3954:55:1964:-4.93641,0,-61.9743	0/0:224:168,56:168:6008:56:1997:0,-11.8847,-113.157	0/0:188:144,44:144:5141:44:1567:0,-13.3437,-88.8913	0/1:59:20,39:20:708:39:1388:-20.9956,0,-3.52254	0/1:362:156,206:156:5596: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chr03	28074908	.	A	G	0.117013	PASS	AB=0.56494;ABP=106.233;AC=46;AF=0.244681;AN=188;AO=1824;CIGAR=1X;DP=6037;DPB=6037;DPRA=1.2585;EPP=3963.78;EPPR=9147.08;GTI=44;LEN=1;MEANALT=1.03448;MQM=12.119;MQMR=12.4481;NS=94;NUMALT=1;ODDS=5.45666;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65097;QR=149609;RO=4211;RPL=1822;RPP=3946.42;RPPR=9112.37;RPR=2;RUN=1;SAF=1822;SAP=3946.42;SAR=2;SRF=4207;SRP=9112.37;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:7,15:7:244:15:536:-9.3117,0,-1.13336	0/1:93:48,45:48:1693:45:1612:-20.2946,0,-27.8683	0/1:79:32,47:32:1110:47:1680:-26.575,0,-12.8959	0/0:77:77,0:77:2745:0:0:0,-23.1793,-91.1462	0/0:24:20,4:20:720:4:144:0,-2.7907,-19.0586	0/1:9:5,4:5:180:4:144:-1.72475,0,-3.26124	0/1:55:22,33:22:773:33:1184:-19.063,0,-9.12622	0/1:101:51,50:51:1794:50:1796:-23.1014,0,-28.1092	0/0:49:49,0:49:1741:0:0:0,-14.7505,-57.0408	0/1:93:42,50:42:1504:50:1796:-27.0977,0,-21.1012	0/1:94:40,54:40:1432:54:1927:-31.5858,0,-19.2822	1/1:94:24,70:24:852:70:2474:-48.884,-0.590221,0	0/0:65:64,1:64:2269:1:36:0,-18.3686,-72.4591	0/0:74:73,1:73:2620:1:36:0,-21.0778,-83.3925	0/1:92:31,61:31:1112:61:2192:-37.7648,0,-8.3747	1/1:69:13,56:13:464:56:1984:-45.9446,-5.45822,0	0/1:113:32,81:32:1140:81:2862:-52.1636,0,-3.3057	0/0:60:60,0:60:2144:0:0:0,-18.0618,-69.3091	0/1:41:18,23:18:625:23:820:-12.2198,0,-8.39565	0/0:102:102,0:102:3609:0:0:0,-30.7051,-117.759	0/0:84:84,0:84:2989:0:0:0,-25.2865,-98.8143	0/0:20:20,0:20:712:0:0:0,-6.0206,-23.4871	0/1:30:13,17:13:449:17:604:-9.32953,0,-7.26907	0/1:111:66,45:66:2364:45:1620:-15.0602,0,-36.6214	0/0:24:24,0:24:848:0:0:0,-7.22472,-29.515	0/0:268:205,63:205:7307:63:2268:0,-13.2369,-131.068	0/0:91:91,0:91:3241:0:0:0,-27.3937,-106.001	0/1:52:16,36:16:561:36:1269:-25.5912,0,-2.57142	0/0:59:59,0:59:2100:0:0:0,-17.7608,-69.7133	0/0:35:35,0:35:1232:0:0:0,-10.536,-39.8273	0/0:99:99,0:99:3517:0:0:0,-29.802,-99.6659	0/0:5:5,0:5:180:0:0:0,-1.50515,-5.4205	0/1:5:2,3:2:72:3:108:-1.85032,0,-0.960931	0/1:3:2,1:2:72:1:36:-0.295293,0,-1.56299	0/0:2:2,0:2:57:0:0:0,-0.60206,-2.41018	0/0:10:10,0:10:360:0:0:0,-3.0103,-10.7232	0/0:135:135,0:135:4829:0:0:0,-40.639,-158.547	0/1:28:14,14:14:504:14:504:-6.60977,0,-7.96465	0/1:89:29,60:29:1044:60:2127:-38.9468,0,-6.49459	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.29794	0/1:119:77,42:77:2729:42:1497:-11.5622,0,-38.8607	0/0:32:32,0:32:1128:0:0:0,-9.63296,-35.6965	0/1:43:19,24:19:665:24:864:-12.7001,0,-9.23404	0/1:103:33,70:33:1180:70:2516:-43.9807,0,-7.66685	0/0:51:50,1:50:1784:1:36:0,-14.1541,-58.0421	0/0:18:18,0:18:640:0:0:0,-5.41854,-20.9704	0/0:44:44,0:44:1576:0:0:0,-13.2453,-50.8048	0/0:157:157,0:157:5542:0:0:0,-47.2617,-160.995	0/0:33:33,0:33:1188:0:0:0,-9.93399,-38.3189	0/0:76:76,0:76:2701:0:0:0,-22.8783,-88.034	0/0:29:29,0:29:1021:0:0:0,-8.72987,-33.6771	0/1:3:2,1:2:72:1:36:-0.295293,0,-1.46841	0/0:134:109,25:109:3888:25:900:0,-13.7051,-77.7407	0/1:23:7,16:7:252:16:572:-10.9794,0,-1.29209	0/0:11:8,3:8:288:3:104:0,-0.14331,-4.67035	0/1:102:67,35:67:2392:35:1248:-6.8873,0,-33.7597	0/1:13:7,6:7:252:6:216:-2.58638,0,-4.30239	0/0:2:2,0:2:72:0:0:0,-0.60206,-2.46608	0/0:5:4,1:4:144:1:36:0,-0.306767,-3.60399	0/1:29:14,15:14:504:15:536:-7.56593,0,-7.75393	0/1:101:43,58:43:1536:58:2076:-38.3167,0,-21.3596	0/1:4:1,3:1:36:3:104:-2.14908,0,-0.0938174	0/0:66:66,0:66:2326:0:0:0,-19.868,-78.7311	0/0:102:102,0:102:3565:0:0:0,-30.7051,-118.969	0/0:57:57,0:57:2029:0:0:0,-17.1587,-59.6741	0/0:25:25,0:25:888:0:0:0,-7.52575,-28.7859	0/0:66:64,2:64:2262:2:72:0,-17.5911,-72.3018	0/1:38:13,25:13:464:25:888:-15.1877,0,-3.33106	0/0:26:26,0:26:920:0:0:0,-7.82678,-30.1302	0/0:38:38,0:38:1349:0:0:0,-11.4391,-43.853	0/0:93:92,1:92:3265:1:36:0,-26.7974,-108.718	0/1:22:12,10:12:428:10:356:-4.09899,0,-7.113	0/0:20:19,1:19:684:1:36:0,-4.82222,-20.5852	0/1:87:55,32:55:1953:32:1114:-8.36333,0,-30.0697	0/1:93:38,55:38:1356:55:1976:-31.2621,0,-15.7067	0/1:92:39,53:39:1377:53:1904:-29.406,0,-17.8237	0/0:70:69,1:69:2434:1:36:0,-19.8737,-70.912	0/0:82:82,0:82:2872:0:0:0,-24.6845,-96.6396	0/1:10:4,6:4:140:6:216:-3.58081,0,-1.7892	0/1:85:33,51:33:1184:51:1819:-29.2555,0,-12.9095	0/0:84:84,0:84:2970:0:0:0,-25.2865,-88.8402	0/0:85:85,0:85:2999:0:0:0,-25.5875,-98.4431	0/1:111:30,81:30:1072:81:2893:-55.2311,0,-1.48438	0/0:51:51,0:51:1824:0:0:0,-15.3525,-58.6186	0/1:143:46,97:46:1640:97:3463:-61.3111,0,-13.2723	0/0:121:120,1:120:4287:1:36:0,-35.2262,-138.612	0/1:50:17,33:17:608:33:1176:-20.025,0,-4.84374	0/1:111:62,49:62:2208:49:1747:-19.36,0,-29.788	0/0:60:60,0:60:2152:0:0:0,-18.0618,-64.103	0/1:81:28,53:28:1004:53:1877:-32.4893,0,-8.36163	0/1:128:58,70:58:2047:70:2498:-37.9166,0,-22.3214	0/1:117:49,68:49:1741:68:2418:-40.0364,0,-14.2102	0/0:60:59,1:59:2074:1:36:0,-16.8634,-67.1033	0/0:74:74,0:74:2652:0:0:0,-22.2762,-85.8465
chr03	28151039	.	C	T	29222.9	PASS	AB=0.446939;ABP=110.857;AC=43;AF=0.228723;AN=188;AO=1993;CIGAR=1X;DP=9116;DPB=9116;DPRA=1.07558;EPP=58.1687;EPPR=1009.48;GTI=0;LEN=1;MEANALT=1;MQM=40.7416;MQMR=59.9433;NS=94;NUMALT=1;ODDS=12.5963;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71389;QR=253630;RO=7123;RPL=2;RPP=4313.4;RPPR=12198.9;RPR=1991;RUN=1;SAF=1111;SAP=60.1474;SAR=882;SRF=4869;SRP=2087.67;SRR=2254;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:12,11:12:417:11:392:-18.6665,0,-30.9365	0/1:57:35,22:35:1248:22:788:-32.0516,0,-95.4662	0/1:50:24,26:24:852:26:928:-49.8539,0,-61.9489	0/0:71:71,0:71:2516:0:0:0,-21.3731,-226.69	0/1:21:13,8:13:468:8:288:-18.2059,0,-36.138	0/1:31:14,17:14:504:17:612:-35.7304,0,-36.3662	0/1:76:25,51:25:884:51:1828:-106.56,0,-57.0001	0/1:70:38,32:38:1347:32:1148:-65.3572,0,-100.457	0/0:88:87,1:87:3105:1:36:0,-24.796,-277.981	0/1:40:15,25:15:519:25:888:-49.9662,0,-34.9955	0/1:299:214,85:214:7648:85:3052:-140.266,0,-598.35	0/1:153:70,83:70:2492:83:2964:-156.786,0,-178.195	0/0:139:139,0:139:4915:0:0:0,-41.8432,-442.493	0/0:191:191,0:191:6782:0:0:0,-57.4967,-610.454	0/1:131:59,72:59:2124:72:2588:-140.873,0,-151.987	0/1:120:49,71:49:1755:71:2556:-152.961,0,-122.11	0/1:131:50,81:50:1751:81:2916:-164.89,0,-118.365	0/0:105:105,0:105:3724:0:0:0,-31.6081,-335.362	0/1:163:107,56:107:3828:56:2012:-108.236,0,-295.649	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.169	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:41:22,19:22:788:19:684:-35.7576,0,-58.9026	0/1:40:17,23:17:612:23:824:-38.3375,0,-43.3722	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/1:75:31,44:31:1095:44:1575:-84.1643,0,-76.2818	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/1:77:34,43:34:1212:43:1535:-87.184,0,-86.207	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:41:39,2:39:1383:2:72:0,-9.12235,-121.548	0/0:66:65,1:65:2319:1:36:0,-18.1733,-207.275	0/0:159:159,0:159:5692:0:0:0,-47.8638,-512.398	0/0:84:77,7:77:2752:7:243:0,-5.77272,-228.409	0/0:78:77,1:77:2742:1:27:0,-20.7806,-244.322	0/0:210:210,0:210:7489:0:0:0,-63.2163,-674.054	0/0:171:171,0:171:6116:0:0:0,-51.4761,-550.541	0/0:239:239,0:239:8509:0:0:0,-71.9462,-765.815	0/1:36:14,22:14:492:22:792:-43.5448,0,-33.7753	0/1:260:182,78:182:6507:78:2787:-129.305,0,-507.447	0/0:77:76,1:76:2715:1:36:0,-21.4846,-242.898	0/1:56:25,31:25:888:31:1116:-54.6589,0,-61.9269	0/0:160:159,1:159:5636:1:36:0,-44.5716,-503.769	0/1:43:21,22:21:737:22:788:-36.266,0,-53.7063	0/1:165:77,88:77:2724:88:3151:-164.495,0,-195.712	0/0:95:95,0:95:3312:0:0:0,-28.5978,-298.298	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.32	0/0:31:31,0:31:1098:0:0:0,-9.33193,-99.1286	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/0:169:168,1:168:5980:1:32:0,-47.6749,-535.108	0/1:49:28,21:28:973:21:743:-34.2747,0,-73.1296	0/1:30:18,12:18:631:12:432:-23.2706,0,-48.0848	0/0:40:40,0:40:1415:0:0:0,-12.0412,-127.647	0/1:48:22,26:22:779:26:923:-42.5379,0,-55.9826	0/1:30:11,19:11:396:19:672:-40.0568,0,-26.9518	0/0:128:128,0:128:4576:0:0:0,-38.5318,-412.006	0/0:48:47,1:47:1665:1:36:0,-12.7548,-148.441	0/1:46:27,19:27:968:19:680:-37.3372,0,-73.59	0/1:191:81,110:81:2889:110:3922:-214.737,0,-202.748	0/0:35:33,2:33:1180:2:72:0,-5.50817,-101.48	0/0:137:137,0:137:4849:0:0:0,-41.2411,-436.409	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:30:30,0:30:1057:0:0:0,-9.0309,-95.439	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/1:50:10,40:10:360:40:1423:-85.2322,0,-17.6928	0/0:334:334,0:334:11932:0:0:0,-100.544,-1073.74	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.491	0/0:132:132,0:132:4723:0:0:0,-39.736,-425.227	0/1:45:35,10:35:1256:10:360:-10.5345,0,-99.7989	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2702	0/1:13:6,7:6:216:7:252:-17.3727,0,-15.8771	0/1:151:81,70:81:2883:70:2512:-122.872,0,-214.251	0/1:67:28,39:28:999:39:1400:-63.5244,0,-70.0555	0/1:46:16,30:16:559:30:1076:-62.6634,0,-36.7898	0/0:30:30,0:30:1053:0:0:0,-9.0309,-95.0786	0/0:49:46,3:46:1647:3:108:0,-10.0054,-143.773	0/1:48:14,34:14:496:34:1220:-58.1739,0,-30.5248	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.574	0/0:99:99,0:99:3504:0:0:0,-29.802,-315.571	0/1:158:68,90:68:2406:90:3220:-168.719,0,-169.003	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/1:161:70,91:70:2481:91:3276:-157.367,0,-175.077	0/0:189:188,1:188:6711:1:36:0,-53.2968,-600.463	0/1:51:17,34:17:604:34:1220:-67.5987,0,-39.3381	0/1:101:39,62:39:1378:62:2220:-120.228,0,-93.9128	0/0:98:98,0:98:3507:0:0:0,-29.5009,-315.81	0/1:436:358,78:358:12765:78:2804:-82.2198,0,-1017.42	0/1:436:337,99:337:11977:99:3556:-137.866,0,-944.965	0/1:95:25,70:25:891:70:2496:-134.789,0,-51.9109	0/0:130:130,0:130:4644:0:0:0,-39.1339,-418.103	0/0:144:144,0:144:5119:0:0:0,-43.3483,-460.839
chr03	28207182	.	T	A	27407.8	PASS	AB=0.455442;ABP=55.452;AC=48;AF=0.258065;AN=186;AO=1394;CIGAR=1X;DP=6667;DPB=6667;DPRA=0.868431;EPP=1592.05;EPPR=3933.96;GTI=1;LEN=1;MEANALT=1.01818;MQM=59.8623;MQMR=59.9812;NS=93;NUMALT=1;ODDS=0.793164;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49950;QR=188735;RO=5271;RPL=31;RPP=2766.77;RPPR=10714;RPR=1363;RUN=1;SAF=1233;SAP=1793.13;SAR=161;SRF=4266;SRP=4383.91;SRR=1005;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:18,20:18:632:20:720:-53.6892,0,-45.7676	0/1:53:30,22:30:1068:22:792:-55.5923,0,-80.4188	0/1:87:47,40:47:1688:40:1436:-103.348,0,-126.017	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.207	0/1:43:26,17:26:932:17:612:-42.4691,0,-71.2546	0/1:35:16,19:16:576:19:684:-51.3497,0,-41.6389	0/1:73:49,24:49:1748:24:849:-54.7535,0,-135.629	0/1:66:42,24:42:1512:24:864:-58.2146,0,-116.507	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:54:33,21:33:1188:21:756:-52.1116,0,-90.973	0/1:72:40,32:40:1436:32:1152:-82.2223,0,-107.862	0/1:115:61,54:61:2192:54:1944:-140.607,0,-162.927	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.845	0/1:64:38,26:38:1368:26:936:-65.2889,0,-104.155	0/1:82:40,42:40:1440:42:1512:-111.69,0,-105.213	0/1:54:25,29:25:891:29:1044:-78.0054,0,-64.2532	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:31:14,17:14:495:17:612:-46.0815,0,-35.5511	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.802	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:112:111,1:111:3972:1:36:0,-30.1171,-354.073	0/1:61:35,26:35:1256:26:928:-65.4754,0,-94.982	0/1:73:41,32:41:1463:32:1137:-80.644,0,-109.982	0/0:78:78,0:78:2782:0:0:0,-23.4803,-250.62	0/1:398:234,164:234:8333:164:5812:-403.334,0,-630.172	0/0:142:142,0:142:5092:0:0:0,-42.7463,-458.419	0/1:24:9,15:9:320:15:536:-41.2937,0,-21.9176	0/0:296:296,0:296:10561:0:0:0,-89.1049,-950.404	0/1:49:29,20:29:1044:20:720:-50.3701,0,-79.5243	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:313:313,0:313:11192:0:0:0,-94.2224,-1007.17	0/1:42:26,16:26:932:16:572:-39.1698,0,-71.5556	0/1:50:26,24:26:936:24:860:-62.6703,0,-69.508	.:.:.:.:.:.:.:.	0/1:74:44,30:44:1580:30:1080:-75.2366,0,-120.215	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:85:50,35:50:1800:35:1260:-88.1179,0,-136.695	0/1:62:30,32:30:1080:32:1152:-85.2897,0,-78.8494	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:194:194,0:194:6936:0:0:0,-58.3998,-624.298	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.383	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.871	0/0:171:170,1:170:6081:1:36:0,-47.8779,-543.792	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:43:14,29:14:500:29:1044:-81.3301,0,-32.3919	0/1:78:35,43:35:1240:43:1536:-115.053,0,-88.4241	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:51:25,26:25:900:26:936:-69.2069,0,-65.9685	0/1:45:29,16:29:1044:16:576:-38.6286,0,-80.7285	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:33:26,7:26:928:7:248:-12.7302,0,-73.9043	0/1:66:33,33:33:1184:33:1188:-87.3606,0,-87.0003	0/1:106:58,48:58:2080:48:1724:-123.536,0,-155.561	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:165:165,0:165:5904:0:0:0,-49.6699,-531.469	0/0:52:52,0:52:1846:0:0:0,-15.6536,-166.419	0/0:63:62,1:62:2232:1:36:0,-15.3666,-197.545	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:64:63,1:63:2256:1:36:0,-15.6676,-199.705	0/1:37:17,20:17:612:20:716:-53.6296,0,-44.2753	0/0:64:63,0:63:2264:0:0:0,-18.9649,-203.662	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/1:23:14,9:14:504:9:324:-22.5806,0,-38.7744	0/0:66:66,0:66:2334:0:0:0,-19.868,-210.319	0/1:52:23,29:23:828:29:1044:-78.6212,0,-59.1906	0/1:94:50,44:50:1796:44:1565:-112.843,0,-133.626	0/1:68:42,26:42:1512:26:936:-64.0894,0,-115.905	0/1:63:33,30:33:1175:30:1076:-78.1317,0,-87.0921	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:56:33,23:33:1173:23:797:-55.1877,0,-89.0145	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/0:115:113,2:113:4060:2:68:0,-28.1607,-359.128	0/1:39:20,19:20:705:19:684:-50.1502,0,-52.0326	0/0:89:89,0:89:3175:0:0:0,-26.7917,-285.974	0/1:52:28,24:28:1000:24:864:-62.4208,0,-74.6618	0/0:101:100,1:100:3584:1:36:0,-26.8058,-319.168	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:71:40,31:40:1432:31:1110:-78.8378,0,-107.801	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:64:39,25:39:1400:25:900:-62.0551,0,-107.03	0/1:111:48,63:48:1728:63:2268:-170.967,0,-122.391	0/1:55:18,37:18:648:37:1332:-103.625,0,-42.0952	0/0:46:44,2:44:1576:2:72:0,-7.01066,-135.295	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.778
chr03	28254804	.	A	G	64758.9	PASS	AB=0.533083;ABP=53.5844;AC=49;AF=0.260638;AN=188;AO=2860;CIGAR=1X;DP=11143;DPB=11143;DPRA=1.10247;EPP=443.868;EPPR=1413.53;GTI=0;LEN=1;MEANALT=1.06557;MQM=59.9969;MQMR=59.9969;NS=94;NUMALT=1;ODDS=5.77261;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101506;QR=295257;RO=8279;RPL=2850;RPP=6126.87;RPPR=17712.4;RPR=10;RUN=1;SAF=1039;SAP=467.314;SAR=1821;SRF=2949;SRP=1489.96;SRR=5330;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:15,9:15:527:9:324:-22.2811,0,-40.5355	0/1:150:74,76:74:2660:76:2698:-197.91,0,-194.491	0/1:93:54,39:54:1936:39:1396:-97.9433,0,-146.521	0/0:248:248,0:248:8798:0:0:0,-74.6554,-791.816	0/1:94:42,52:42:1508:52:1839:-137.493,0,-107.718	0/1:57:29,28:29:1044:28:996:-72.7962,0,-77.1161	0/1:186:93,93:93:3296:93:3282:-239.611,0,-240.87	0/1:135:68,67:68:2436:67:2370:-172.919,0,-178.856	0/0:81:81,0:81:2883:0:0:0,-24.3834,-259.707	0/1:157:73,84:73:2616:84:2978:-220.991,0,-188.34	0/1:125:58,67:58:2047:67:2374:-176.289,0,-146.873	0/1:73:34,39:34:1215:39:1398:-104.144,0,-87.6806	0/1:56:35,21:35:1248:21:734:-49.5227,0,-95.7672	0/0:190:190,0:190:6775:0:0:0,-57.1957,-609.826	0/1:141:77,64:77:2756:64:2265:-161.666,0,-205.837	0/1:140:69,71:69:2463:71:2515:-184.458,0,-179.78	0/1:91:50,41:50:1792:41:1447:-103.131,0,-134.169	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:63:22,41:22:792:41:1434:-110.387,0,-52.6408	0/0:183:181,2:181:6433:2:72:0,-48.2518,-572.225	0/0:241:241,0:241:8572:0:0:0,-72.5482,-771.486	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:142:50,92:50:1784:92:3270:-251.774,0,-118.096	0/1:138:72,66:72:2576:66:2348:-170.038,0,-190.547	0/0:94:94,0:94:3331:0:0:0,-28.2968,-300.009	0/1:366:175,191:175:6191:191:6773:-499.47,0,-447.117	0/0:249:249,0:249:8912:0:0:0,-74.9565,-802.063	0/1:55:33,22:33:1188:22:788:-54.6881,0,-90.6719	0/0:225:224,1:224:7962:1:36:0,-64.1335,-713.009	0/1:132:63,68:63:2243:68:2409:-177.409,0,-162.476	0/0:138:138,0:138:4921:0:0:0,-41.5421,-443.041	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:21:7,14:7:252:14:496:-38.6526,0,-16.7073	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:372:371,1:371:13279:1:36:0,-108.385,-1191.31	0/1:107:32,75:32:1144:75:2652:-206.717,0,-71.0593	0/1:62:33,29:33:1179:29:1044:-75.6109,0,-87.7534	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:202:94,108:94:3348:108:3856:-286.429,0,-240.73	0/0:76:76,0:76:2711:0:0:0,-22.8783,-244.234	0/0:181:181,0:181:6460:0:0:0,-54.4864,-581.489	0/0:172:172,0:172:6157:0:0:0,-51.7772,-554.227	0/0:143:142,1:142:5076:1:36:0,-39.449,-453.387	0/0:72:72,0:72:2555:0:0:0,-21.6742,-230.201	0/0:89:89,0:89:3166:0:0:0,-26.7917,-285.165	0/0:162:162,0:162:5760:0:0:0,-48.7669,-518.518	0/0:113:113,0:113:4015:0:0:0,-34.0164,-361.541	0/0:162:159,3:159:5644:3:108:0,-38.6917,-498.008	0/0:142:142,0:142:5059:0:0:0,-42.7463,-455.457	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3584	0/1:82:35,47:35:1260:47:1663:-125.272,0,-89.021	0/1:80:48,32:48:1700:32:1136:-78.4665,0,-129.204	0/1:21:8,13:8:288:13:460:-35.4137,0,-19.9458	0/0:147:147,0:147:5233:0:0:0,-44.2514,-471.109	0/1:72:20,52:20:716:52:1843:-144.475,0,-43.0936	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:20:7,13:7:252:13:448:-34.6284,0,-17.0084	0/1:97:45,51:45:1591:51:1791:-132.213,0,-114.221	0/1:211:109,102:109:3895:102:3621:-262.579,0,-287.227	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:130:130,0:130:4639:0:0:0,-39.1339,-417.673	0/0:157:155,2:155:5542:2:72:0,-40.425,-492.067	0/0:102:102,0:102:3635:0:0:0,-30.7051,-327.356	0/0:86:85,1:85:2993:1:36:0,-22.2903,-266.005	0/0:184:180,4:180:6410:4:144:0,-42.0759,-563.678	0/1:184:60,123:60:2131:123:4323:-333.952,0,-136.757	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/0:82:82,0:82:2912:0:0:0,-24.6845,-262.314	0/0:147:147,0:147:5241:0:0:0,-44.2514,-471.828	0/1:35:18,17:18:640:17:603:-44.0635,0,-47.3933	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:51:18,33:18:648:33:1184:-91.5158,0,-43.2994	0/1:230:99,130:99:3528:130:4614:-346.171,0,-248.475	0/1:208:97,111:97:3462:111:3943:-292.45,0,-249.177	0/1:53:26,27:26:936:27:968:-71.4828,0,-68.6049	0/0:79:76,3:76:2715:3:108:0,-13.7062,-234.518	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	0/1:162:74,88:74:2652:88:3132:-233.341,0,-190.159	0/0:93:92,1:92:3291:1:36:0,-24.3975,-292.811	0/0:206:203,3:203:7244:3:108:0,-51.937,-641.938	0/1:146:68,78:68:2422:78:2762:-204.872,0,-174.285	0/0:149:149,0:149:5327:0:0:0,-44.8535,-479.564	0/1:147:72,75:72:2576:75:2671:-196.384,0,-187.838	0/0:265:263,2:263:9399:2:72:0,-72.9362,-839.038	0/1:47:23,24:23:824:24:845:-62.2187,0,-60.3349	0/1:94:45,49:45:1616:49:1751:-129.577,0,-117.433	0/1:79:43,36:43:1540:36:1284:-92.082,0,-115.112	0/1:112:49,63:49:1756:63:2252:-169.22,0,-124.609	0/1:202:105,97:105:3752:97:3452:-250.086,0,-277.073	0/1:155:51,104:51:1824:104:3706:-287.082,0,-117.781	0/0:133:133,0:133:4755:0:0:0,-40.037,-428.108	0/0:243:243,0:243:8651:0:0:0,-73.1503,-778.587
chr03	28254828	.	G	C	30361.5	PASS	AB=0.513529;ABP=8.47468;AC=49;AF=0.260638;AN=188;AO=1780;CIGAR=1X;DP=7162;DPB=7162;DPRA=0.982684;EPP=3773.28;EPPR=11376.8;GTI=1;LEN=1;MEANALT=1.14035;MQM=59.9949;MQMR=59.9927;NS=94;NUMALT=1;ODDS=0.520271;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63485;QR=192120;RO=5369;RPL=1769;RPP=3773.28;RPPR=11376.8;RPR=11;RUN=1;SAF=0;SAP=3868.23;SAR=1780;SRF=0;SRP=11661.6;SRR=5369;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3501	0/1:151:74,77:74:2644:77:2741:-201.476,0,-192.751	0/1:92:53,38:53:1892:38:1368:-95.6673,0,-142.805	0/0:134:134,0:134:4792:0:0:0,-40.338,-431.437	0/1:54:27,27:27:972:27:968:-71.1817,0,-71.5423	0/1:55:27,28:27:964:28:996:-73.3982,0,-70.5202	0/1:118:64,54:64:2292:54:1928:-138.275,0,-171.02	0/1:131:67,64:67:2388:64:2284:-166.387,0,-175.743	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/1:89:45,44:45:1612:44:1575:-115.25,0,-118.492	0/1:49:23,26:23:820:26:932:-69.4484,0,-59.372	0/1:71:33,38:33:1163:38:1352:-100.607,0,-83.603	0/1:55:33,22:33:1180:22:784:-54.3273,0,-89.9514	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.048	0/1:69:41,28:41:1476:28:1004:-69.9048,0,-112.365	0/1:68:35,33:35:1251:33:1169:-85.0452,0,-92.4242	0/1:93:51,41:51:1823:41:1472:-104.722,0,-136.296	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:59:22,37:22:779:37:1320:-101.341,0,-52.6713	0/0:109:107,2:107:3852:2:72:0,-25.9755,-340.037	0/0:158:158,0:158:5656:0:0:0,-47.5627,-509.16	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:54:27,27:27:968:27:968:-71.1817,0,-71.1817	0/1:112:64,47:64:2300:47:1683:-117.983,0,-173.487	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.646	0/1:219:111,108:111:3968:108:3841:-279.961,0,-291.386	0/0:139:139,0:139:4984:0:0:0,-41.8432,-448.707	0/1:25:13,12:13:464:12:424:-30.9707,0,-34.5718	0/0:142:142,0:142:5092:0:0:0,-42.7463,-458.423	0/1:99:43,56:43:1536:56:2008:-151.191,0,-108.731	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.466	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:235:234,0:234:8392:0:0:0,-70.441,-754.963	0/1:59:22,37:22:788:37:1324:-101.701,0,-53.484	0/1:59:31,28:31:1108:28:1008:-73.2756,0,-82.2702	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:114:53,61:53:1892:61:2169:-161.158,0,-136.241	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:118:117,0:117:4196:0:0:0,-35.2205,-377.461	0/0:116:116,0:116:4144:0:0:0,-34.9195,-373.144	0/0:85:85,0:85:3028:0:0:0,-25.5875,-272.752	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1111	0/0:85:84,0:84:2988:0:0:0,-25.2865,-268.794	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/0:67:66,0:66:2356:0:0:0,-19.868,-211.939	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:83:37,45:37:1324:45:1593:-118.614,0,-94.4179	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/0:93:93,0:93:3324:0:0:0,-27.9958,-299.378	0/1:44:14,30:14:500:30:1080:-84.2679,0,-32.0909	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:5,5:5:180:5:165:-12.1633,0,-13.5418	0/1:41:25,16:25:888:16:561:-38.4749,0,-67.8968	0/1:115:61,54:61:2192:54:1932:-139.538,0,-162.927	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.546	0/0:113:111,1:111:3980:1:21:0,-31.9003,-356.215	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:60:59,1:59:2112:1:36:0,-14.4635,-186.751	0/0:138:133,4:133:4764:4:125:0,-30.0328,-417.349	0/1:64:19,45:19:676:45:1616:-126.464,0,-41.9021	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:104:104,0:104:3699:0:0:0,-31.3071,-333.114	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:52:18,34:18:644:34:1224:-94.8135,0,-42.637	0/1:119:46,73:46:1644:73:2594:-197.887,0,-112.426	0/1:112:59,53:59:2112:53:1885:-136.211,0,-156.634	0/1:54:28,26:28:1004:26:932:-67.9432,0,-74.4202	0/0:80:77,3:77:2748:3:108:0,-14.0072,-237.488	0/1:12:4,8:4:140:8:288:-22.655,0,-9.33222	0/1:109:52,57:52:1872:57:2025:-149.709,0,-135.947	0/0:93:92,1:92:3292:1:36:0,-24.3975,-292.901	0/0:133:130,2:130:4648:2:72:0,-33.2591,-411.646	0/1:93:40,53:40:1428:53:1896:-142.922,0,-100.822	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.387	0/1:100:51,49:51:1832:49:1711:-124.166,0,-135.058	0/0:150:149,1:149:5336:1:36:0,-41.5562,-476.775	0/1:46:23,23:23:828:23:828:-60.9967,0,-60.9967	0/1:89:43,46:43:1536:46:1644:-121.457,0,-111.741	0/1:77:43,34:43:1540:34:1212:-86.207,0,-115.714	0/1:50:18,31:18:648:31:1112:-85.2729,0,-43.5416	0/1:91:45,46:45:1604:46:1640:-120.495,0,-117.256	0/1:74:20,54:20:720:54:1931:-151.79,0,-42.8526	0/0:91:90,0:90:3232:0:0:0,-27.0927,-290.778	0/0:145:145,0:145:5188:0:0:0,-43.6493,-467.06
chr03	28254927	.	C	T	46157.8	PASS	AB=0.488731;ABP=7.65978;AC=50;AF=0.268817;AN=186;AO=2069;CIGAR=1X;DP=8314;DPB=8314;DPRA=0.992861;EPP=25.0766;EPPR=4.6663;GTI=1;LEN=1;MEANALT=1;MQM=59.7931;MQMR=59.8046;NS=93;NUMALT=1;ODDS=0.674258;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73044;QR=221202;RO=6243;RPL=2059;RPP=4409.35;RPPR=13240;RPR=10;RUN=1;SAF=952;SAP=31.5837;SAR=1117;SRF=3050;SRP=10.123;SRR=3193;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:20,11:20:703:11:377:-24.926,0,-54.2616	0/1:111:45,66:45:1607:66:2322:-175.823,0,-111.505	0/1:106:51,55:51:1803:55:1936:-142.605,0,-130.64	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.35	0/1:58:32,26:32:1148:26:926:-66.1971,0,-86.1634	0/1:44:24,20:24:852:20:720:-51.8825,0,-63.7542	0/1:115:62,53:62:2194:53:1860:-133.057,0,-163.098	0/1:103:57,46:57:1990:46:1605:-113.727,0,-148.354	0/0:97:97,0:97:3444:0:0:0,-29.1999,-310.1	0/1:98:49,49:49:1747:49:1707:-124.408,0,-127.997	0/1:121:69,52:69:2442:52:1816:-127.18,0,-183.608	0/1:160:72,88:72:2544:88:3134:-234.119,0,-180.617	0/1:169:91,78:91:3214:78:2750:-196.842,0,-238.61	0/0:135:135,0:135:4805:0:0:0,-40.639,-432.283	0/1:112:54,58:54:1927:58:2071:-152.945,0,-139.988	0/1:129:65,64:65:2324:64:2275:-166.019,0,-170.583	0/1:145:79,66:79:2798:66:2323:-165.679,0,-208.405	0/0:123:123,0:123:4334:0:0:0,-37.0267,-390.234	0/1:90:45,45:45:1567:45:1593:-116.565,0,-114.224	0/0:153:153,0:153:5440:0:0:0,-46.0576,-489.639	0/0:133:133,0:133:4717:0:0:0,-40.037,-424.687	0/0:24:24,0:24:830:0:0:0,-7.22472,-75.0114	0/1:41:19,22:19:669:22:773:-57.5434,0,-48.1894	0/1:97:59,38:59:2111:38:1333:-91.0675,0,-161.054	0/0:51:51,0:51:1766:0:0:0,-15.3525,-159.013	0/1:112:63,49:63:2236:49:1741:-123.256,0,-167.784	0/0:118:117,1:117:4140:1:36:0,-31.9233,-369.18	0/1:68:41,27:41:1447:27:942:-64.6221,0,-110.055	0/0:138:138,0:138:4875:0:0:0,-41.5421,-438.9	0/1:38:20,18:20:711:18:640:-46.4886,0,-52.8765	0/0:83:83,0:83:2948:0:0:0,-24.9855,-265.55	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45733	0/0:290:290,0:290:10236:0:0:0,-87.2987,-921.118	0/1:75:37,38:37:1288:38:1317:-96.2453,0,-93.6072	0/1:129:66,63:66:2327:63:2250:-163.906,0,-170.846	.:.:.:.:.:.:.:.	0/1:70:34,36:34:1197:36:1268:-93.3488,0,-86.9613	0/0:72:72,0:72:2532:0:0:0,-21.6742,-228.13	0/0:115:115,0:115:4100:0:0:0,-34.6184,-368.864	0/0:173:173,0:173:6126:0:0:0,-52.0782,-551.435	0/0:124:124,0:124:4370:0:0:0,-37.3277,-393.465	0/0:53:53,0:53:1870:0:0:0,-15.9546,-168.481	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.284	0/0:100:100,0:100:3552:0:0:0,-30.103,-319.883	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.553	0/0:89:89,0:89:3177:0:0:0,-26.7917,-286.148	0/0:98:97,1:97:3435:1:36:0,-25.9027,-304.53	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59568	0/1:123:63,60:63:2264:60:2118:-153.839,0,-166.768	0/1:20:7,13:7:237:13:468:-36.439,0,-15.6385	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:91:90,1:90:3211:1:36:0,-23.7972,-285.616	0/1:42:19,23:19:660:23:819:-61.386,0,-47.0773	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:8:4,4:4:135:4:144:-10.9054,0,-10.0743	0/1:90:50,40:50:1783:40:1421:-101.085,0,-133.625	0/1:176:101,75:101:3607:75:2624:-183.394,0,-271.85	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:72:72,0:72:2549:0:0:0,-21.6742,-229.656	0/0:102:101,0:101:3591:0:0:0,-30.404,-322.83	0/0:46:45,1:45:1597:1:36:0,-10.2491,-140.418	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.497	0/0:95:93,2:93:3316:2:72:0,-21.7611,-291.817	0/1:81:33,48:33:1173:48:1704:-129.26,0,-81.4614	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.794	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.178	0/0:129:129,0:129:4558:0:0:0,-38.8329,-410.329	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:46:46,0:46:1628:0:0:0,-13.8474,-146.804	0/1:74:46,28:46:1633:28:984:-66.5863,0,-124.98	0/1:142:64,78:64:2245:78:2757:-205.434,0,-159.561	0/1:117:68,49:68:2391:49:1737:-121.392,0,-179.663	0/1:82:43,39:43:1532:39:1369:-98.8198,0,-113.488	0/0:84:83,1:83:2968:1:36:0,-21.6887,-263.749	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:75:36,39:36:1288:39:1373:-101.285,0,-93.6463	0/0:101:101,0:101:3590:0:0:0,-30.404,-323.305	0/0:167:167,0:167:5907:0:0:0,-50.272,-531.708	0/1:152:84,68:84:2994:68:2401:-170.575,0,-223.932	0/0:108:108,0:108:3832:0:0:0,-32.5112,-345.075	0/1:172:81,91:81:2870:91:3228:-238.953,0,-206.749	0/0:244:243,1:243:8577:1:36:0,-69.853,-768.327	0/1:73:39,34:39:1372:34:1183:-84.7959,0,-101.801	0/1:110:52,58:52:1841:58:2060:-152.557,0,-132.853	0/1:134:80,54:80:2845:54:1899:-130.845,0,-215.855	0/1:82:38,44:38:1355:44:1580:-117.807,0,-97.5637	0/1:102:47,55:47:1671:55:1936:-143.809,0,-119.969	0/1:113:35,78:35:1222:78:2736:-212.273,0,-76.2631	0/0:71:71,0:71:2515:0:0:0,-21.3731,-226.593	0/0:208:207,0:207:7305:0:0:0,-62.3132,-657.279
chr03	28269843	.	A	G	114874	PASS	AB=0.511261;ABP=6.77592;AC=139;AF=0.739362;AN=188;AO=5446;CIGAR=1X;DP=7138;DPB=7138;DPRA=19.375;EPP=11828.8;EPPR=3664.11;GTI=1;LEN=1;MEANALT=1.05435;MQM=59.9893;MQMR=59.9822;NS=94;NUMALT=1;ODDS=2.82119;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194713;QR=59987;RO=1686;RPL=0;RPP=11828.8;RPPR=3664.11;RPR=5446;RUN=1;SAF=5446;SAP=11828.8;SAR=0;SRF=1686;SRP=3664.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/1:119:64,55:64:2292:55:1953:-140.221,0,-170.719	0/1:105:38,67:38:1344:67:2389:-183.658,0,-89.652	1/1:123:1,122:1:36:122:4368:-389.695,-33.4284,0	0/1:13:7,6:7:248:6:212:-15.5114,0,-18.7508	0/1:24:13,11:13:464:11:388:-28.0326,0,-34.8728	0/1:97:34,61:34:1193:61:2177:-167.237,0,-78.716	0/1:142:74,68:74:2633:68:2440:-177.108,0,-194.47	1/1:41:1,40:1:36:40:1440:-126.299,-8.74396,0	0/1:127:34,93:34:1216:93:3312:-260.069,0,-71.5158	0/1:37:16,21:16:576:21:756:-57.2291,0,-41.0369	0/1:70:36,34:36:1292:34:1220:-89.0347,0,-95.5117	0/1:64:24,40:24:864:40:1436:-110.272,0,-58.8166	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	0/1:65:29,36:29:1032:36:1296:-97.377,0,-73.6265	0/1:51:32,19:32:1148:19:680:-46.1766,0,-87.6492	0/1:45:21,24:21:756:24:849:-63.1815,0,-54.8209	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0	0/1:26:14,12:14:496:12:406:-29.0357,0,-37.1475	1/1:129:0,129:0:0:129:4583:-412.633,-38.8329,0	1/1:100:0,100:0:0:100:3580:-322.407,-30.103,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	0/1:86:34,52:34:1220:52:1868:-142.511,0,-84.2182	0/1:84:28,56:28:996:56:2008:-155.707,0,-64.6684	1/1:89:0,89:0:0:89:3173:-285.793,-26.7917,0	0/1:371:169,201:169:5937:201:7179:-534.421,0,-422.702	1/1:135:0,135:0:0:135:4845:-436.201,-40.6391,0	0/1:37:21,16:21:756:16:571:-40.5848,0,-57.2291	1/1:185:0,185:0:0:185:6618:-595.7,-55.6906,0	0/1:133:69,64:69:2468:64:2281:-165.513,0,-182.337	1/1:102:0,102:0:0:102:3653:-328.972,-30.7051,0	1/1:14:0,14:0:0:14:485:-43.977,-4.21442,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:186:0,186:0:0:186:6676:-600.915,-55.9916,0	0/1:207:136,71:136:4849:71:2548:-167.253,0,-374.251	0/1:31:11,20:11:396:20:716:-55.4358,0,-26.6508	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:48:25,23:25:900:23:820:-59.6731,0,-66.8716	1/1:21:0,21:0:0:21:737:-66.6506,-6.32163,0	1/1:120:1,119:1:32:119:4247:-379.21,-32.9243,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:65:0,65:0:0:65:2316:-208.701,-19.567,0	1/1:62:0,62:0:0:62:2175:-196.013,-18.6639,0	1/1:129:0,129:0:0:129:4610:-415.059,-38.8329,0	1/1:139:0,138:0:0:138:4955:-445.738,-41.5421,0	1/1:103:0,103:0:0:103:3704:-333.56,-31.0061,0	1/1:163:0,163:0:0:163:5848:-526.407,-49.0679,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:103:45,58:45:1582:58:2065:-155.113,0,-111.66	0/1:27:4,23:4:144:23:805:-64.6397,0,-5.18581	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:77:0,77:0:0:77:2722:-245.221,-23.1793,0	0/1:39:16,23:16:564:23:828:-63.1039,0,-39.3501	1/1:11:0,11:0:0:11:381:-34.6205,-3.31133,0	0/1:16:9,7:9:305:7:252:-18.2125,0,-22.9607	0/1:62:22,40:22:784:40:1432:-110.514,0,-52.2201	0/1:89:50,39:50:1784:39:1398:-99.3272,0,-134.051	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:164:0,164:0:0:164:5859:-527.421,-49.3689,0	1/1:130:5,125:5:165:125:4492:-389.273,-23.9603,0	1/1:54:0,54:0:0:54:1925:-173.525,-16.2556,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:182:0,182:0:0:182:6479:-583.193,-54.7875,0	0/1:113:75,38:75:2676:38:1356:-88.1943,0,-207.069	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:95:0,95:0:0:95:3415:-307.563,-28.5979,0	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	1/1:67:0,67:0:0:67:2381:-214.546,-20.169,0	0/1:54:21,33:21:711:33:1188:-90.973,0,-48.0447	0/1:107:54,53:54:1893:53:1904:-139.428,0,-138.436	0/1:126:68,58:68:2394:58:2088:-150.26,0,-177.785	0/1:52:21,31:21:756:31:1108:-84.3774,0,-52.7137	1/1:62:1,61:1:36:61:2188:-193.587,-15.0656,0	1/1:15:1,13:1:36:13:468:-38.8614,-0.975973,0	0/1:87:54,33:54:1913:33:1188:-81.039,0,-146.256	1/1:82:0,82:0:0:82:2921:-263.124,-24.6845,0	1/1:96:0,96:0:0:96:3406:-306.753,-28.8989,0	0/1:118:59,59:59:2124:59:2124:-155.907,0,-155.907	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:87:47,40:47:1684:40:1436:-103.348,0,-125.657	1/1:129:1,128:1:36:128:4604:-410.923,-35.2346,0	0/1:39:19,20:19:684:20:716:-53.0275,0,-50.1502	0/1:74:34,40:34:1220:40:1440:-107.622,0,-87.8306	0/1:57:30,27:30:1072:27:968:-70.2787,0,-79.6337	0/1:22:14,8:14:500:8:288:-19.6447,0,-38.7135	0/1:60:26,34:26:936:34:1205:-90.6921,0,-66.4977	0/1:66:49,16:49:1764:16:568:-31.5254,0,-139.117	1/1:52:0,52:0:0:52:1837:-165.609,-15.6536,0	1/1:76:0,76:0:0:76:2717:-244.772,-22.8783,0
chr03	28269962	.	C	T	130743	PASS	AB=0.592641;ABP=231.938;AC=139;AF=0.739362;AN=188;AO=6152;CIGAR=1X;DP=7413;DPB=7413;DPRA=79.6989;EPP=11844.2;EPPR=2730.39;GTI=6;LEN=1;MEANALT=1.01075;MQM=41.0234;MQMR=59.3579;NS=94;NUMALT=1;ODDS=0.62135;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219556;QR=44841;RO=1260;RPL=180;RPP=11844.2;RPPR=2730.39;RPR=5972;RUN=1;SAF=0;SAP=13361.9;SAR=6152;SRF=0;SRP=2739.07;SRR=1260;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:23,28:23:816:28:992:-68.5878,0,-58.1123	0/1:55:20,35:20:701:35:1244:-89.4227,0,-45.8443	0/1:108:46,62:46:1634:62:2228:-154.86,0,-114.747	1/1:175:2,173:2:72:173:6140:-527.875,-45.8435,0	0/1:30:8,22:8:288:22:784:-58.0523,0,-17.2365	0/1:52:7,45:7:252:45:1616:-120.976,0,-7.3754	0/1:93:39,54:39:1388:54:1904:-138.798,0,-97.2213	0/1:92:31,61:31:1112:61:2171:-156.435,0,-72.6942	1/1:108:3,105:3:108:105:3757:-305.847,-22.4361,0	0/1:26:9,16:9:324:16:576:-42.4531,0,-21.1317	0/1:41:16,25:16:576:25:892:-65.4025,0,-39.8328	0/1:79:39,40:39:1372:40:1428:-95.7203,0,-99.3634	0/1:77:36,41:36:1292:41:1455:-100.169,0,-93.3963	1/1:58:0,58:0:0:58:2076:-179.536,-17.4597,0	0/1:54:28,26:28:999:26:932:-65.5992,0,-73.9689	0/1:67:31,36:31:1104:36:1284:-90.6499,0,-79.3101	0/1:40:23,17:23:754:17:612:-39.2967,0,-55.9639	1/1:34:0,34:0:0:34:1199:-99.7629,-10.235,0	0/1:20:12,8:12:428:8:288:-18.7089,0,-32.8349	1/1:104:0,104:0:0:104:3709:-323.323,-31.3071,0	1/1:145:0,145:0:0:145:5184:-446.483,-43.6494,0	1/1:100:0,100:0:0:100:3588:-315.5,-30.103,0	0/1:113:41,72:41:1468:72:2571:-191.22,0,-98.3974	0/1:38:24,14:24:860:14:500:-32.1229,0,-66.2781	1/1:68:0,68:0:0:68:2413:-206.571,-20.47,0	0/1:157:49,108:49:1741:108:3857:-290.914,0,-109.693	1/1:207:0,207:0:0:207:7394:-633.09,-62.3132,0	0/1:25:15,10:15:540:10:352:-23.4854,0,-41.4053	1/1:151:0,151:0:0:151:5416:-477.719,-45.4555,0	0/1:158:61,97:61:2188:97:3437:-246.545,0,-149.414	1/1:150:0,150:0:0:150:5351:-465.186,-45.1545,0	1/1:3:0,3:0:0:3:108:-9.52747,-0.90309,0	0/1:10:3,7:3:108:7:237:-17.7272,0,-7.06487	1/1:9:0,9:0:0:9:324:-26.7573,-2.70927,0	1/1:3:0,3:0:0:3:108:-9.48528,-0.90309,0	1/1:17:0,17:0:0:17:595:-49.1264,-5.11751,0	1/1:165:0,165:0:0:165:5897:-517.997,-49.67,0	0/1:143:39,104:39:1404:104:3723:-274.655,0,-83.5964	0/1:40:19,21:19:680:21:740:-50.3387,0,-49.4798	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:91:35,56:35:1260:56:2004:-145.627,0,-86.2933	1/1:22:0,22:0:0:22:788:-68.6455,-6.62266,0	1/1:141:1,140:1:36:140:5003:-426.834,-38.8521,0	1/1:41:0,41:0:0:41:1470:-128.356,-12.3422,0	1/1:46:0,46:0:0:46:1656:-143.442,-13.8474,0	1/1:129:0,129:0:0:129:4578:-403.631,-38.8329,0	1/1:103:0,103:0:0:103:3672:-309.608,-31.0061,0	1/1:159:0,159:0:0:159:5708:-497.41,-47.8638,0	1/1:119:0,119:0:0:119:4228:-370.251,-35.8226,0	1/1:118:0,118:0:0:118:4212:-365.029,-35.5215,0	1/1:195:1,194:1:36:194:6890:-605.197,-55.1036,0	1/1:11:0,11:0:0:11:396:-34.5757,-3.31133,0	0/1:112:46,66:46:1634:66:2356:-165.582,0,-113.599	0/1:59:20,39:20:708:39:1392:-105.393,0,-46.2845	0/1:7:1,6:1:36:6:216:-16.4434,0,-1.49106	1/1:137:0,137:0:0:137:4904:-422.196,-41.2411,0	0/1:51:25,26:25:900:26:932:-66.1944,0,-65.5926	1/1:3:0,3:0:0:3:100:-9.24829,-0.90309,0	0/1:8:4,4:4:135:4:136:-10.0094,0,-10.0743	0/1:70:32,38:32:1144:38:1355:-95.9808,0,-81.1692	0/1:106:53,53:53:1874:53:1879:-132.088,0,-136.251	1/1:2:0,2:0:0:2:72:-6.65513,-0.60206,0	1/1:139:0,139:0:0:139:4954:-436.075,-41.8432,0	1/1:135:1,134:1:36:134:4782:-413.129,-37.0408,0	1/1:57:0,57:0:0:57:2044:-176.255,-17.1587,0	1/1:58:0,58:0:0:58:2071:-180.034,-17.4597,0	1/1:203:0,203:0:0:203:7215:-627.805,-61.1091,0	0/1:119:51,68:51:1828:68:2424:-174.267,0,-128.94	1/1:38:0,38:0:0:38:1359:-116.959,-11.4391,0	1/1:62:0,62:0:0:62:2219:-187.686,-18.6639,0	1/1:44:0,44:0:0:44:1580:-139.281,-13.2453,0	0/1:12:4,8:4:144:8:288:-21.9573,0,-9.70126	1/1:141:0,141:0:0:141:5022:-426.49,-42.4452,0	0/1:64:14,50:14:496:50:1796:-133.484,0,-25.7083	0/1:105:36,69:36:1279:69:2449:-177.21,0,-83.7713	0/1:117:49,68:49:1752:68:2431:-177.25,0,-122.741	0/1:66:16,50:16:564:50:1779:-130.559,0,-31.2166	1/1:92:0,92:0:0:92:3280:-278.623,-27.6948,0	0/1:9:3,6:3:108:6:216:-15.7601,0,-7.3659	0/1:80:30,50:30:1063:50:1780:-129.333,0,-71.8984	1/1:74:0,74:0:0:74:2652:-224.329,-22.2762,0	1/1:205:0,205:0:0:205:7315:-635.853,-61.7112,0	0/1:51:25,26:25:896:26:932:-66.1461,0,-65.5748	1/1:55:0,55:0:0:55:1980:-172.107,-16.5567,0	0/1:30:17,13:17:604:13:464:-31.76,0,-45.6597	1/1:114:0,114:0:0:114:4072:-354.211,-34.3174,0	0/1:23:12,11:12:428:11:392:-26.6128,0,-31.7438	0/1:58:30,28:30:1058:28:996:-65.4046,0,-78.0689	0/1:61:30,31:30:1063:31:1086:-73.1893,0,-77.6047	0/1:32:18,14:18:640:14:500:-33.9503,0,-48.2917	0/1:96:38,58:38:1342:58:2077:-150,0,-92.1603	0/1:75:42,33:42:1496:33:1184:-81.208,0,-112.35	1/1:121:0,121:0:0:121:4344:-378.426,-36.4246,0	1/1:80:1,79:1:36:79:2844:-245.1,-20.4867,0
chr03	28270051	.	T	C	22162.2	PASS	AB=0.497394;ABP=3.16875;AC=50;AF=0.268817;AN=186;AO=1339;CIGAR=1X;DP=6037;DPB=6037;DPRA=0.758902;EPP=2910.61;EPPR=10070.4;GTI=2;LEN=1;MEANALT=1.02;MQM=59.481;MQMR=59.98;NS=93;NUMALT=1;ODDS=0.520489;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47813;QR=168265;RO=4696;RPL=0;RPP=2910.61;RPPR=10001.4;RPR=1339;RUN=1;SAF=0;SAP=2910.61;SAR=1339;SRF=8;SRP=10130.9;SRR=4688;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:44,25:44:1580:25:896:-60.1831,0,-121.72	0/1:32:19,13:19:680:13:468:-32.809,0,-51.8962	0/1:172:68,104:68:2444:104:3687:-280.2,0,-168.437	0/0:110:110,0:110:3933:0:0:0,-33.1133,-354.161	0/1:28:21,7:21:756:7:252:-14.6001,0,-59.9384	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/1:100:37,63:37:1332:63:2239:-171.219,0,-90.0794	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/1:85:43,42:43:1536:42:1512:-110.787,0,-112.946	0/1:62:31,31:31:1108:31:1112:-81.7271,0,-81.3671	0/1:95:58,37:58:2080:37:1332:-91.5356,0,-158.872	0/1:81:39,42:39:1404:42:1512:-111.921,0,-102.276	0/0:73:73,0:73:2605:0:0:0,-21.9752,-234.686	0/1:76:42,34:42:1508:34:1220:-87.094,0,-113.136	0/1:52:26,26:26:921:26:927:-68.08,0,-67.5516	0/1:40:17,23:17:593:23:820:-62.0813,0,-41.6535	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/0:94:94,0:94:3354:0:0:0,-28.2968,-302.074	0/0:145:145,0:145:5208:0:0:0,-43.6493,-468.857	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:53:31,22:31:1116:22:788:-54.9187,0,-84.7971	0/1:54:31,23:31:1116:23:803:-56.3104,0,-84.4961	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:135:76,59:76:2728:59:2086:-146.962,0,-205.124	0/0:142:142,0:142:5100:0:0:0,-42.7463,-459.127	0/1:39:18,21:18:644:21:749:-55.9743,0,-46.5504	0/0:158:158,0:158:5646:0:0:0,-47.5627,-508.116	0/1:66:23,43:23:828:43:1527:-117.854,0,-54.9761	0/0:51:51,0:51:1802:0:0:0,-15.3525,-162.453	.:.:.:.:.:.:.:.	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:9:8,1:8:284:1:32:-0.482155,0,-23.1941	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:201:201,0:201:7220:0:0:0,-60.507,-649.842	0/1:56:41,15:41:1472:15:536:-31.7171,0,-115.918	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:61:27,34:27:972:34:1220:-91.7358,0,-69.4351	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:132:132,0:132:4736:0:0:0,-39.736,-426.397	0/0:60:60,0:60:2145:0:0:0,-18.0618,-193.316	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.487	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/0:78:78,0:78:2793:0:0:0,-23.4803,-251.608	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:61:33,28:33:1184:28:993:-71.3021,0,-88.5055	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:9:1,8:1:36:8:284:-23.1763,0,-0.889005	0/0:114:114,0:114:4100:0:0:0,-34.3174,-369.183	0/1:21:13,8:13:453:8:288:-19.9458,0,-34.778	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/1:56:28,28:28:1008:28:992:-72.7191,0,-74.1649	0/1:65:33,32:33:1188:32:1140:-83.2849,0,-87.6616	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:132:132,0:132:4718:0:0:0,-39.736,-424.774	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.157	0/1:55:23,32:23:813:32:1152:-87.4335,0,-56.9325	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:11:8,3:8:284:3:104:-6.39148,0,-22.592	0/0:54:54,0:54:1902:0:0:0,-16.2556,-171.454	0/1:75:53,22:53:1904:22:788:-48.6675,0,-149.06	0/1:99:53,46:53:1896:46:1644:-118.447,0,-141.116	0/1:92:48,43:48:1728:43:1540:-111.279,0,-128.219	0/1:67:38,29:38:1364:29:1025:-72.3741,0,-102.892	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/1:12:3,9:3:108:9:324:-25.8757,0,-6.46281	0/1:103:42,61:42:1493:61:2186:-165.945,0,-103.656	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.062	0/0:198:198,0:198:7074:0:0:0,-59.6039,-636.718	0/1:67:34,33:34:1224:33:1184:-86.6993,0,-90.298	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/1:57:22,35:22:792:35:1236:-94.3689,0,-54.447	0/0:150:150,0:150:5373:0:0:0,-45.1545,-483.699	0/1:18:9,9:9:324:9:320:-23.706,0,-24.0873	0/1:66:38,28:38:1368:28:1008:-71.1146,0,-103.553	0/1:72:35,37:35:1256:37:1319:-97.283,0,-91.6711	0/1:37:14,23:14:504:23:820:-62.9844,0,-34.56	0/1:90:38,52:38:1364:52:1872:-141.639,0,-95.968	0/1:78:28,50:28:1008:50:1792:-138.081,0,-67.556	0/0:98:97,0:97:3465:0:0:0,-29.1999,-311.701	0/0:142:141,1:141:5064:1:36:0,-39.148,-452.302
chr03	28270063	.	C	T	22855.6	PASS	AB=0.507491;ABP=4.31156;AC=50;AF=0.268817;AN=186;AO=1358;CIGAR=1X;DP=5907;DPB=5907;DPRA=0.749639;EPP=2951.87;EPPR=9757.64;GTI=2;LEN=1;MEANALT=1;MQM=59.4389;MQMR=59.9798;NS=93;NUMALT=1;ODDS=2.73928;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48688;QR=162348;RO=4548;RPL=1358;RPP=2951.87;RPPR=9757.64;RPR=0;RUN=1;SAF=0;SAP=2951.87;SAR=1358;SRF=0;SRP=9878.87;SRR=4548;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:40,24:40:1428:24:860:-58.4498,0,-109.552	0/1:31:18,13:18:640:13:468:-33.11,0,-48.5974	0/1:164:62,102:62:2209:102:3652:-279.463,0,-149.704	0/0:105:105,0:105:3756:0:0:0,-31.6081,-338.24	0/1:28:20,8:20:716:8:288:-17.8247,0,-56.3389	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/1:104:36,68:36:1292:68:2430:-186.97,0,-85.2766	0/0:80:80,0:80:2847:0:0:0,-24.0824,-256.468	0/1:85:43,42:43:1536:42:1504:-110.067,0,-112.946	0/1:58:28,30:28:995:30:1080:-80.0535,0,-72.4043	0/1:94:55,39:55:1964:39:1396:-97.5862,0,-148.738	0/1:81:39,42:39:1400:42:1512:-111.921,0,-101.916	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.655	0/1:77:41,36:41:1460:36:1296:-93.5177,0,-108.517	0/1:52:24,28:24:864:28:1008:-75.369,0,-62.429	0/1:39:17,22:17:604:22:788:-59.5046,0,-42.9504	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:19:12,7:12:428:7:252:-17.3094,0,-33.1392	0/0:94:94,0:94:3356:0:0:0,-28.2968,-302.257	0/0:140:140,0:140:4976:0:0:0,-42.1442,-447.99	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:54:32,22:32:1133:22:792:-54.9648,0,-86.021	0/1:55:31,24:31:1081:24:860:-61.1292,0,-81.04	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:134:74,60:74:2640:60:2135:-151.941,0,-197.509	0/0:137:137,0:137:4883:0:0:0,-41.2411,-439.61	0/1:39:18,21:18:644:21:756:-56.5991,0,-46.5504	0/0:153:153,0:153:5463:0:0:0,-46.0576,-491.799	0/1:66:23,43:23:820:43:1540:-119.025,0,-54.2545	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	.:.:.:.:.:.:.:.	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:9:8,1:8:288:1:36:-0.869497,0,-23.5581	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:195:195,0:195:6950:0:0:0,-58.7008,-625.559	0/1:54:39,15:39:1391:15:532:-31.9575,0,-109.233	0/1:36:20,16:20:716:16:576:-41.3379,0,-53.9306	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:59:26,33:26:923:33:1184:-89.0994,0,-65.626	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:129:129,0:129:4582:0:0:0,-38.8329,-412.548	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:79:78,1:78:2800:1:36:0,-20.1831,-248.641	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.726	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:62:33,29:33:1161:29:1044:-75.5933,0,-86.1309	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:9:1,8:1:36:8:288:-23.5403,0,-0.889005	0/0:106:106,0:106:3775:0:0:0,-31.9092,-339.95	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/1:55:27,28:27:968:28:1004:-74.1016,0,-70.867	0/1:68:33,35:33:1184:35:1260:-93.1781,0,-86.3983	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:123:123,0:123:4401:0:0:0,-37.0267,-396.259	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/1:55:23,32:23:815:32:1152:-87.4335,0,-57.1141	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.826	0/1:75:52,23:52:1860:23:828:-52.2669,0,-145.102	0/1:99:51,48:51:1810:48:1716:-124.923,0,-133.378	0/1:92:49,43:49:1738:43:1540:-111.171,0,-127.818	0/1:67:37,30:37:1324:30:1076:-76.96,0,-99.2931	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.142	0/1:12:3,9:3:108:9:316:-25.1593,0,-6.46281	0/1:105:42,63:42:1508:63:2251:-171.209,0,-104.406	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/0:190:190,0:190:6800:0:0:0,-57.1957,-612.061	0/1:67:35,32:35:1252:32:1144:-83.1005,0,-92.8161	0/0:72:72,0:72:2556:0:0:0,-21.6742,-230.289	0/1:57:22,35:22:779:35:1260:-96.5284,0,-53.2734	0/0:145:145,0:145:5166:0:0:0,-43.6493,-465.082	0/1:17:8,9:8:288:9:320:-24.0071,0,-21.1499	0/1:63:36,27:36:1292:27:968:-68.4187,0,-97.6189	0/1:73:35,38:35:1240:38:1364:-101.012,0,-89.9293	0/1:36:14,22:14:504:22:788:-60.4077,0,-34.861	0/1:91:37,54:37:1332:54:1932:-146.629,0,-92.7887	0/1:78:27,51:27:968:51:1836:-142.04,0,-63.957	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.484	0/0:136:135,0:135:4828:0:0:0,-40.639,-434.354
chr03	28337424	.	A	T	81227.7	PASS	AB=0.501929;ABP=3.32025;AC=92;AF=0.489362;AN=188;AO=4814;CIGAR=1X;DP=9593;DPB=9593;DPRA=104.25;EPP=10001.2;EPPR=10293.8;GTI=0;LEN=1;MEANALT=1;MQM=44.7059;MQMR=59.8929;NS=94;NUMALT=1;ODDS=0.0810396;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172066;QR=168667;RO=4779;RPL=53;RPP=10001.2;RPPR=10293.8;RPR=4761;RUN=1;SAF=4814;SAP=10456.5;SAR=0;SRF=4779;SRP=10380.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:25,25:25:872:25:896:-65.0208,0,-63.7449	0/1:107:61,46:61:2138:46:1656:-113.046,0,-160.439	0/1:94:55,39:55:1933:39:1404:-96.5124,0,-145.948	0/1:233:171,62:171:6026:62:2224:-127.526,0,-472.313	0/1:122:38,84:38:1356:84:2982:-227.709,0,-85.6148	0/1:69:22,47:22:765:47:1684:-129.168,0,-48.3963	0/1:95:57,38:57:2028:38:1368:-92.0784,0,-154.195	0/1:216:60,156:60:2101:156:5591:-430.064,0,-124.328	0/1:214:107,107:107:3789:107:3822:-275.342,0,-276.563	0/1:43:23,20:23:820:20:716:-50.983,0,-61.1782	0/1:10:3,7:3:108:7:252:-19.7002,0,-7.06487	0/1:12:7,5:7:237:5:180:-12.7573,0,-18.0467	0/1:18:6,12:6:216:12:432:-32.4948,0,-14.372	0/1:23:15,8:15:540:8:288:-18.9805,0,-42.0128	0/1:12:4,8:4:144:8:288:-22.301,0,-9.70126	0/1:18:6,12:6:216:12:432:-32.8116,0,-14.372	0/1:19:6,13:6:216:13:458:-35.2437,0,-14.0709	0/1:22:12,10:12:413:10:360:-25.7198,0,-30.8752	0/1:4:2,2:2:72:2:72:-5.55725,0,-5.6326	0/1:138:101,37:101:3592:37:1324:-76.2694,0,-281.947	0/1:165:76,89:76:2704:89:3173:-231.72,0,-193.931	0/1:234:117,117:117:4141:117:4166:-298.393,0,-302.436	0/1:120:43,77:43:1536:77:2723:-204.82,0,-102.409	0/1:250:109,141:109:3837:141:5057:-371.258,0,-270.261	0/1:155:106,49:106:3745:49:1760:-108.893,0,-290.563	0/1:260:133,127:133:4681:127:4560:-323.953,0,-343.19	0/1:321:172,149:172:6031:149:5345:-374.976,0,-446.187	0/1:9:7,2:7:252:2:72:-4.03291,0,-20.3197	0/1:432:202,230:202:7102:230:8192:-592.994,0,-509.206	0/1:140:76,64:76:2685:64:2283:-160.867,0,-199.706	0/1:284:156,128:156:5520:128:4565:-317.528,0,-411.44	0/1:9:7,2:7:248:2:72:-4.03291,0,-19.9549	0/1:11:3,8:3:108:8:288:-22.5928,0,-6.76384	0/1:6:2,4:2:68:4:144:-11.3399,0,-4.65153	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:2,2:2:68:2:72:-5.55725,0,-5.25359	0/1:102:56,46:56:1985:46:1656:-116.078,0,-148.218	0/1:157:84,73:84:2930:73:2624:-184.39,0,-216.674	0/1:10:4,6:4:144:6:212:-16.2178,0,-10.2666	0/1:3:1,2:1:32:2:72:-5.83909,0,-2.29622	0/1:115:64,51:64:2272:51:1805:-125.745,0,-170.124	0/1:4:3,1:3:104:1:36:-2.3444,0,-8.49869	0/1:240:150,90:150:5320:90:3224:-212.789,0,-406.693	0/1:24:16,8:16:572:8:288:-18.6794,0,-44.5887	0/1:16:10,6:10:352:6:216:-14.7004,0,-27.2017	0/1:271:112,159:112:3953:159:5647:-417.14,0,-274.372	0/1:207:123,84:123:4361:84:3024:-206.975,0,-330.001	0/1:156:76,80:76:2680:80:2841:-205.393,0,-194.487	0/1:264:134,130:134:4772:130:4664:-334.318,0,-349.44	0/1:203:99,104:99:3488:104:3697:-266.395,0,-253.027	0/1:298:162,136:162:5719:136:4852:-339.235,0,-425.058	0/1:14:9,5:9:320:5:180:-12.1088,0,-24.9279	0/1:142:67,75:67:2380:75:2692:-196.727,0,-171.712	0/1:52:21,31:21:748:31:1116:-83.3803,0,-51.9917	0/1:11:2,9:2:72:9:305:-24.0517,0,-3.52539	0/1:110:73,37:73:2569:37:1317:-84.1289,0,-198.347	0/1:31:21,10:21:732:10:360:-22.0605,0,-56.8639	0/1:7:4,3:4:140:3:104:-7.45543,0,-10.8374	0/1:22:4,18:4:140:18:648:-51.0161,0,-6.32192	0/1:105:40,65:40:1416:65:2336:-175.602,0,-96.1292	0/1:65:28,37:28:996:37:1332:-98.9535,0,-70.3833	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:232:111,121:111:3889:121:4314:-310.001,0,-280.286	0/1:345:185,160:185:6523:160:5740:-403.871,0,-483.292	0/1:105:73,32:73:2592:32:1129:-68.583,0,-201.922	0/1:138:63,75:63:2236:75:2690:-194.303,0,-159.962	0/1:191:121,70:121:4261:70:2508:-163.128,0,-325.687	0/1:39:17,22:17:608:22:777:-56.9106,0,-43.3119	0/1:4:3,1:3:108:1:36:-2.3444,0,-8.87105	0/1:80:35,45:35:1225:45:1616:-119.595,0,-86.4693	0/1:76:38,38:38:1348:38:1364:-97.2174,0,-98.742	0/1:16:11,5:11:388:5:180:-11.5067,0,-30.4409	0/1:187:85,102:85:2982:102:3638:-266.472,0,-211.857	0/1:56:19,37:19:672:37:1328:-100.889,0,-43.9492	0/1:217:75,142:75:2596:142:5054:-380.992,0,-168.561	0/1:148:57,91:57:2004:91:3253:-244.128,0,-136.082	0/1:74:31,43:31:1092:43:1533:-114.02,0,-76.3072	0/1:114:63,51:63:2233:51:1815:-126.812,0,-166.915	0/1:15:2,13:2:68:13:453:-35.9209,0,-1.94226	0/1:102:37,65:37:1288:65:2325:-175.838,0,-85.5115	0/1:101:41,60:41:1441:60:2121:-156.941,0,-99.5797	0/1:388:185,203:185:6516:203:7273:-526.493,0,-469.695	0/1:67:19,48:19:684:48:1720:-132.386,0,-41.7213	0/1:17:13,4:13:464:4:144:-8.012,0,-36.98	0/1:22:7,15:7:248:15:540:-41.5239,0,-16.0415	0/1:51:27,24:27:951:24:864:-61.2453,0,-70.5518	0/1:29:9,20:9:324:20:720:-55.6811,0,-20.776	0/1:25:7,18:7:248:18:644:-49.7457,0,-15.1384	0/1:36:13,23:13:464:23:824:-62.7721,0,-31.2604	0/1:5:2,3:2:72:3:108:-8.43069,0,-5.33157	0/1:11:5,6:5:176:6:209:-15.4495,0,-12.8737	0/1:10:5,5:5:180:5:180:-13.2707,0,-13.5418	0/1:97:45,52:45:1561:52:1845:-134.979,0,-111.571	0/1:45:18,27:18:648:27:972:-72.5496,0,-45.1055
chr03	28337455	.	C	T	76876.3	PASS	AB=0.495977;ABP=4.35576;AC=92;AF=0.489362;AN=188;AO=4746;CIGAR=1X;DP=9571;DPB=9571;DPRA=104.011;EPP=10308.8;EPPR=10476;GTI=1;LEN=1;MEANALT=1.02174;MQM=44.6365;MQMR=59.9023;NS=94;NUMALT=1;ODDS=0.468701;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169188;QR=170766;RO=4823;RPL=4746;RPP=10308.8;RPPR=10476;RPR=0;RUN=1;SAF=4746;SAP=10308.8;SAR=0;SRF=4823;SRP=10476;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:24,27:24:856:27:968:-71.1254,0,-62.0086	0/1:106:62,44:62:2197:44:1584:-106.909,0,-166.07	0/1:96:58,38:58:2046:38:1359:-91.8952,0,-155.38	0/1:238:179,59:179:6379:59:2115:-116.365,0,-502.558	0/1:117:37,80:37:1324:80:2863:-218.771,0,-84.2416	0/1:70:23,47:23:820:47:1662:-126.956,0,-53.05	0/1:96:57,39:57:2039:39:1400:-94.6713,0,-154.882	0/1:216:61,154:61:2164:154:5496:-421.655,0,-129.942	0/1:209:104,105:104:3724:105:3772:-272.43,0,-272.446	0/1:43:25,18:25:896:18:648:-44.8965,0,-68.0161	0/1:10:3,7:3:108:7:237:-18.3743,0,-7.06487	0/1:12:7,5:7:243:5:180:-12.7573,0,-18.5951	0/1:16:5,11:5:180:11:396:-29.8607,0,-11.7356	0/1:23:15,8:15:540:8:288:-18.9805,0,-42.0128	0/1:15:6,9:6:208:9:324:-24.5916,0,-14.5436	0/1:20:7,13:7:248:13:468:-35.4035,0,-16.6436	0/1:19:6,13:6:212:13:460:-35.1751,0,-13.7052	0/1:21:12,9:12:423:9:320:-22.4759,0,-32.083	0/1:5:3,2:3:104:2:72:-5.25622,0,-8.19766	0/1:146:108,38:108:3856:38:1360:-77.0549,0,-303.284	0/1:169:78,91:78:2763:91:3240:-236.499,0,-198.039	0/1:230:115,115:115:4102:115:4123:-295.711,0,-300.128	0/1:121:44,77:44:1559:77:2710:-203.417,0,-104.176	0/1:245:109,136:109:3891:136:4849:-354.654,0,-276.61	0/1:155:107,48:107:3806:48:1711:-104.589,0,-296.071	0/1:258:136,122:136:4855:122:4344:-305.712,0,-359.439	0/1:321:174,147:174:6165:147:5263:-367.823,0,-458.194	0/1:9:7,2:7:233:2:72:-4.03291,0,-18.585	0/1:428:199,229:199:7058:229:8199:-594.302,0,-506.442	0/1:141:76,65:76:2691:65:2327:-164.378,0,-199.962	0/1:283:160,123:160:5597:123:4362:-300.196,0,-418.663	0/1:9:7,2:7:237:2:72:-4.03291,0,-18.9498	0/1:11:3,8:3:108:8:288:-22.5928,0,-6.76384	0/1:6:1,5:1:32:5:180:-14.5792,0,-1.39313	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:2,2:2:72:2:72:-5.55725,0,-5.6326	0/1:105:56,49:56:1970:49:1700:-119.268,0,-145.966	0/1:156:86,70:86:3020:70:2494:-173.619,0,-225.072	0/1:10:4,6:4:144:6:208:-15.8736,0,-10.2666	0/1:3:1,2:1:36:2:72:-5.83909,0,-2.69518	0/1:114:62,52:62:2159:52:1841:-129.347,0,-160.255	0/1:4:3,1:3:104:1:36:-2.3444,0,-8.49869	0/1:242:155,87:155:5472:87:3114:-202.633,0,-419.763	0/1:25:17,8:17:603:8:288:-18.3784,0,-47.0738	0/1:15:9,6:9:311:6:216:-15.0014,0,-23.8083	0/1:273:117,156:117:4159:156:5548:-407.898,0,-292.297	0/1:208:123,85:123:4309:85:3020:-206.388,0,-325.181	0/1:154:75,79:75:2675:79:2820:-204.085,0,-194.627	0/1:263:134,129:134:4774:129:4605:-329.524,0,-349.933	0/1:201:99,102:99:3514:102:3623:-260.7,0,-255.964	0/1:297:166,131:166:5843:131:4659:-322.376,0,-436.557	0/1:14:9,5:9:320:5:180:-12.1088,0,-24.9279	0/1:144:71,73:71:2517:73:2607:-188.602,0,-183.433	0/1:52:21,31:21:748:31:1116:-83.3803,0,-51.9917	0/1:12:3,9:3:108:9:324:-25.2836,0,-6.46281	0/1:108:72,36:72:2527:36:1296:-82.8464,0,-195.169	0/1:31:20,11:20:716:11:379:-24.1522,0,-55.4358	0/1:7:4,3:4:140:3:108:-7.79393,0,-10.8374	0/1:23:4,19:4:140:19:684:-53.8976,0,-6.02089	0/1:104:39,65:39:1384:65:2327:-175.09,0,-93.5517	0/1:64:28,36:28:1004:36:1279:-94.6211,0,-71.4053	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:229:110,119:110:3833:119:4266:-306.598,0,-276.147	0/1:342:184,158:184:6533:158:5636:-395.614,0,-485.09	0/1:102:71,31:71:2535:31:1108:-67.6017,0,-197.696	0/1:134:59,75:59:2050:75:2685:-194.592,0,-144.431	0/1:197:126,71:126:4432:71:2522:-162.334,0,-339.478	0/1:39:17,22:17:612:22:792:-58.2224,0,-43.6733	0/1:4:3,1:3:108:1:36:-2.3444,0,-8.87105	0/1:79:34,45:34:1193:45:1603:-118.79,0,-83.8916	0/1:77:38,39:38:1360:39:1377:-98.172,0,-99.5213	0/1:16:11,5:11:383:5:165:-10.1725,0,-29.9868	0/1:193:87,106:87:3081:106:3743:-273.837,0,-218.956	0/1:57:19,38:19:680:38:1337:-102.036,0,-44.3705	0/1:212:78,134:78:2768:134:4777:-358.219,0,-185.486	0/1:146:56,90:56:1992:90:3195:-239.175,0,-135.604	0/1:73:31,42:31:1096:42:1489:-110.408,0,-76.9747	0/1:117:68,49:68:2408:49:1751:-120.062,0,-181.754	0/1:12:3,9:3:108:9:315:-24.7101,0,-6.46281	0/1:101:33,68:33:1180:68:2436:-185.574,0,-76.0934	0/1:102:41,61:41:1412:61:2151:-158.91,0,-96.6649	0/1:375:182,193:182:6441:193:6888:-496.678,0,-466.859	0/1:70:22,48:22:771:48:1703:-130.151,0,-48.6382	0/1:17:13,4:13:451:4:144:-8.012,0,-35.8023	0/1:20:7,13:7:252:13:460:-35.1807,0,-17.0084	0/1:52:29,23:29:1031:23:824:-57.3745,0,-77.4491	0/1:27:8,19:8:284:19:671:-51.9582,0,-17.7755	0/1:27:8,19:8:271:19:675:-51.9045,0,-16.5916	0/1:37:13,24:13:468:24:860:-65.6739,0,-31.3215	0/1:4:2,2:2:72:2:72:-5.53806,0,-5.6326	0/1:9:4,5:4:136:5:180:-13.1594,0,-9.86627	0/1:10:5,5:5:180:5:180:-13.2707,0,-13.5418	0/1:95:43,51:43:1501:51:1811:-132.548,0,-106.8	0/1:46:18,28:18:639:28:1008:-75.4514,0,-43.9909
chr03	28355717	.	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chr03	28377653	.	G	C	42274.8	PASS	AB=0.511738;ABP=8.82176;AC=49;AF=0.260638;AN=188;AO=2496;CIGAR=1X;DP=10990;DPB=10990;DPRA=0.884551;EPP=5423.01;EPPR=18430.1;GTI=1;LEN=1;MEANALT=1.07273;MQM=59.8313;MQMR=59.9913;NS=94;NUMALT=1;ODDS=0.254602;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89344;QR=303426;RO=8486;RPL=0;RPP=5423.01;RPPR=18430.1;RPR=2496;RUN=1;SAF=2496;SAP=5423.01;SAR=0;SRF=8486;SRP=18430.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:27,28:27:972:28:996:-73.3982,0,-71.2413	0/1:192:109,82:109:3901:82:2944:-207.276,0,-293.425	0/1:198:105,93:105:3734:93:3340:-241.213,0,-276.655	0/0:329:329,0:329:11768:0:0:0,-99.0389,-1058.98	0/1:90:46,43:46:1637:43:1548:-112.462,0,-120.465	0/1:78:33,45:33:1173:45:1609:-121.619,0,-82.3952	0/1:178:45,133:45:1584:133:4780:-376.763,0,-89.2643	0/1:136:64,72:64:2296:72:2584:-191.869,0,-165.961	0/0:87:87,0:87:3100:0:0:0,-26.1896,-279.226	0/1:136:75,61:75:2665:61:2176:-155.166,0,-199.149	0/1:26:13,13:13:460:13:468:-34.6329,0,-33.9086	0/1:39:19,20:19:684:20:716:-53.0275,0,-50.1502	0/1:45:19,26:19:684:26:936:-71.0131,0,-48.3431	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:33:12,21:12:432:21:756:-58.4048,0,-29.2872	0/1:43:27,16:27:972:16:559:-37.6933,0,-74.8536	0/1:30:18,12:18:648:12:428:-29.8093,0,-49.621	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:27:18,9:18:644:9:324:-21.378,0,-50.1628	0/0:312:311,1:311:11080:1:36:0,-90.3231,-993.494	0/0:164:163,0:163:5856:0:0:0,-49.0679,-526.753	0/0:199:199,0:199:7140:0:0:0,-59.905,-641.294	0/1:101:57,44:57:2044:44:1576:-111.714,0,-153.828	0/1:207:93,114:93:3325:114:4084:-305.43,0,-237.153	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:454:238,216:238:8502:216:7717:-557.707,0,-628.511	0/0:278:278,0:278:9942:0:0:0,-83.6863,-894.695	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:407:407,0:407:14537:0:0:0,-122.519,-1308.07	0/1:239:117,122:117:4166:122:4353:-319.93,0,-303.175	0/0:213:213,0:213:7618:0:0:0,-64.1194,-685.654	0/0:7:6,0:6:216:0:0:0,-1.80618,-19.4307	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:117:117,0:117:4189:0:0:0,-35.2205,-377.19	0/1:331:166,165:166:5960:165:5894:-430.61,0,-436.864	0/1:23:8,15:8:288:15:540:-42.0082,0,-19.3437	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:245:124,121:124:4437:121:4321:-315.313,0,-325.747	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:190:189,0:189:6764:0:0:0,-56.8947,-608.474	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:151:151,0:151:5378:0:0:0,-45.4555,-484.151	0/0:236:236,0:236:8465:0:0:0,-71.0431,-761.847	0/0:289:289,0:289:10349:0:0:0,-86.9977,-931.33	0/0:175:175,0:175:6269:0:0:0,-52.6802,-564.302	0/0:178:178,0:178:6344:0:0:0,-53.5833,-571.047	0/0:252:252,0:252:9045:0:0:0,-75.8596,-814.022	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:180:98,82:98:3508:82:2940:-210.645,0,-261.745	0/1:81:31,50:31:1116:50:1788:-136.819,0,-76.3683	0/1:33:25,8:25:881:8:288:-16.3334,0,-69.6719	0/0:156:156,0:156:5608:0:0:0,-46.9607,-504.839	0/1:108:42,66:42:1512:66:2364:-180.507,0,-103.863	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/1:17:13,4:13:468:4:144:-8.19611,0,-37.3421	0/1:102:57,45:57:2048:45:1616:-114.791,0,-153.887	0/1:91:37,54:37:1332:54:1940:-147.482,0,-92.7887	0/1:11:7,4:7:248:4:140:-9.63325,0,-19.3529	0/0:315:315,0:315:11202:0:0:0,-94.8244,-1008.07	0/0:297:295,2:295:10546:2:72:0,-82.5692,-942.216	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/0:114:113,1:113:4056:1:36:0,-30.7191,-361.628	0/0:215:210,5:210:7491:5:180:0,-48.1694,-657.679	0/1:149:44,105:44:1580:105:3748:-292.386,0,-97.6381	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:128:127,1:127:4514:1:36:0,-34.9336,-402.829	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/1:43:19,24:19:684:24:852:-63.9039,0,-48.946	0/0:190:190,0:190:6782:0:0:0,-57.1957,-610.451	0/1:76:41,35:41:1431:35:1244:-89.1579,0,-106.201	0/1:196:95,101:95:3385:101:3628:-267.68,0,-245.863	0/1:215:101,112:101:3602:112:3987:-294.539,0,-259.904	0/1:152:88,64:88:3129:64:2300:-160.877,0,-236.079	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:156:70,85:70:2520:85:3044:-227.17,0,-180.032	0/0:178:177,1:177:6328:1:36:0,-49.9851,-566.012	0/0:222:222,0:222:7961:0:0:0,-66.8287,-716.509	0/1:74:41,33:41:1460:33:1176:-83.8715,0,-109.42	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:41:18,23:18:648:23:828:-62.5019,0,-46.3097	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	0/1:39:16,23:16:576:23:820:-62.3744,0,-40.4348	0/1:41:18,23:18:648:23:824:-62.1411,0,-46.3097	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:37:18,19:18:648:19:684:-50.7522,0,-47.5138	0/1:21:5,16:5:180:16:576:-45.8534,0,-10.2304	0/0:158:158,0:158:5661:0:0:0,-47.5627,-509.607	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467
chr03	28377680	.	TCTTT	TCTTG,CCTTG	231452	PASS	AB=0.478477,0.515108;ABP=22.4529,12.5896;AC=139,49;AF=0.739362,0.260638;AN=188;AO=8291,2502;CIGAR=4M1X,1X3M1X;DP=10864;DPB=10864;DPRA=0,0.856622;EPP=17989.3,5436.03;EPPR=13.8677;GTI=2;LEN=1,5;MEANALT=2.25532,2.60714;MQM=59.9995,59.8597;MQMR=60;NS=94;NUMALT=2;ODDS=0.262306;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,32;PQR=0;PRO=0;QA=296122,86511;QR=173;RO=5;RPL=8289,2502;RPP=17989.3,5436.03;RPPR=13.8677;RPR=2,0;RUN=1,1;SAF=8291,2502;SAP=18006.7,5436.03;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:55:0,27,28:0:0:27,28:963,965:-157.239,-78.7312,-70.6034,-78.8581,0,-70.4293	1/2:186:0,104,82:0:0:104,82:3732,2872:-538.44,-234.021,-202.714,-304.773,0,-280.088	1/2:195:0,100,95:0:0:100,95:3571,3309:-560.578,-269.436,-239.333,-291.495,0,-262.897	1/1:321:0,320,0:0:0:320,0:11440,0:-1029.21,-96.3296,0,-1029.21,-96.3296,-1029.21	1/2:91:0,46,45:0:0:46,45:1652,1585:-264.156,-129.39,-115.543,-135.121,0,-121.575	1/2:77:0,31,45:0:0:31,45:1112,1567:-218.276,-127.569,-118.238,-90.8545,0,-77.3081	1/2:178:0,44,134:0:0:44,134:1580,4594:-502.182,-373.291,-360.046,-129.246,0,-88.9082	1/2:136:0,64,72:0:0:64,72:2266,2471:-385.557,-200.969,-181.703,-184.936,0,-163.262	1/1:83:0,82,0:0:0:82,0:2937,0:-264.311,-24.6845,0,-264.311,-24.6845,-264.311	1/2:133:0,72,61:0:0:72,61:2583,2098:-381.418,-170.725,-149.05,-211.044,0,-192.681	1/2:26:0,13,13:0:0:13,13:440,443:-71.9515,-36.2825,-32.3691,-36.0085,0,-32.0952	1/2:39:0,18,21:0:0:18,21:640,725:-111.407,-59.2473,-53.8288,-52.5108,0,-46.1891	1/2:44:0,19,25:0:0:19,25:654,860:-123.303,-70.1867,-64.4671,-53.4604,0,-45.9347	1/1:33:0,33,0:0:0:33,0:1168,0:-105.427,-9.93399,0,-105.427,-9.93399,-105.427	1/2:33:0,12,21:0:0:12,21:428,734:-94.9306,-60.0381,-56.4257,-35.2464,0,-28.9248	1/2:43:0,27,16:0:0:27,16:960,542:-122.527,-44.2833,-36.1555,-78.5885,0,-73.772	1/2:31:0,18,13:0:0:18,13:644,445:-88.9642,-36.4407,-31.0222,-52.8721,0,-48.9587	1/1:32:0,32,0:0:0:32,0:1139,0:-102.818,-9.63296,0,-102.818,-9.63296,-102.818	1/2:27:0,18,9:0:0:18,9:630,293:-75.2512,-23.9787,-18.5602,-51.6061,0,-48.8968	1/1:308:0,307,0:0:0:307,0:10962,0:-986.255,-92.4162,0,-986.255,-92.4162,-986.255	1/1:163:0,163,0:0:0:163,0:5821,0:-524.003,-49.0679,0,-524.003,-49.0679,-524.003	1/1:193:0,192,0:0:0:192,0:6862,0:-617.398,-57.7978,0,-617.398,-57.7978,-617.398	1/2:102:0,58,42:0:0:58,42:2077,1476:-289.538,-120.152,-102.692,-169.404,0,-156.761	1/2:208:0,93,115:0:0:93,115:3319,3977:-594.084,-323.503,-295.507,-270.933,0,-236.314	1/1:45:0,44,0:0:0:44,0:1557,0:-140.06,-13.2453,0,-140.06,-13.2453,-140.06	1/2:447:0,227,215:0:0:227,215:8124,7393:-1262.82,-600.326,-531.992,-662.55,0,-597.829	1/1:273:0,271,0:0:0:271,0:9716,0:-874.124,-81.5791,0,-874.124,-81.5791,-874.124	1/2:16:0,6,10:0:0:6,10:208,345:-45.2784,-28.3714,-26.5652,-17.2529,0,-14.2426	1/1:400:0,396,0:0:0:396,0:14142,0:-1272.24,-119.208,0,-1272.24,-119.208,-1272.24	1/2:241:0,115,124:0:0:115,124:4093,4302:-683.371,-349.786,-315.167,-333.704,0,-296.376	1/1:207:0,205,0:0:0:205,0:7345,0:-660.783,-61.7112,0,-660.783,-61.7112,-660.783	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:9:0,5,4:0:0:5,4:180,139:-26.3421,-11.6481,-10.1429,-15.0469,0,-13.8428	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:12:0,12,0:0:0:12,0:419,0:-38.0427,-3.61236,0,-38.0427,-3.61236,-38.0427	1/1:116:0,115,0:0:0:115,0:4100,0:-368.915,-34.6185,0,-368.915,-34.6185,-368.915	1/2:326:0,161,164:0:0:161,164:5771,5651:-929.746,-459.06,-410.595,-470.776,0,-421.407	1/2:23:0,8,15:0:0:8,15:288,518:-65.9296,-42.4251,-40.0169,-23.8592,0,-19.3437	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:248:0,121,124:0:0:121,124:4344,4265:-700.752,-346.394,-309.969,-354.392,0,-317.064	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:185:0,184,0:0:0:184,0:6560,0:-590.211,-55.3895,0,-590.211,-55.3895,-590.211	1/1:40:0,40,0:0:0:40,0:1421,0:-128.185,-12.0412,0,-128.185,-12.0412,-128.185	1/1:34:0,34,0:0:0:34,0:1175,0:-106.048,-10.235,0,-106.048,-10.235,-106.048	1/1:151:0,150,0:0:0:150,0:5343,0:-480.725,-45.1545,0,-480.725,-45.1545,-480.725	1/1:237:1,233,0:1:36:233,0:8340,0:-747.033,-67.1934,0,-747.334,-70.14,-750.272	1/1:282:1,278,1:1:36:278,1:9955,31:-892.321,-80.7373,0,-890.134,-81.2028,-892.77	1/1:171:1,170,0:1:30:170,0:6074,0:-543.763,-48.4766,0,-544.064,-51.1751,-546.462	1/1:176:0,176,0:0:0:176,0:6273,0:-564.664,-52.9813,0,-564.664,-52.9813,-564.664	1/1:250:0,250,0:0:0:250,0:8956,0:-806.017,-75.2575,0,-806.017,-75.2575,-806.017	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:181:0,96,82:0:0:96,82:3431,2821:-508.84,-229.086,-200.187,-279.748,0,-255.063	1/2:81:0,32,49:0:0:32,49:1148,1711:-233.167,-139.525,-129.892,-93.9969,0,-79.2464	1/2:32:0,24,8:0:0:24,8:864,276:-93.2757,-22.7664,-15.5417,-70.8578,0,-68.4496	1/1:154:0,151,0:0:0:151,0:5405,0:-486.285,-45.4555,0,-486.285,-45.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chr03	28383964	.	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chr03	28383972	.	T	C	116590	PASS	AB=0.541473;ABP=48.0392;AC=137;AF=0.736559;AN=186;AO=5482;CIGAR=1X;DP=6874;DPB=6874;DPRA=0;EPP=11907;EPPR=3012.67;GTI=3;LEN=1;MEANALT=1.05376;MQM=59.7142;MQMR=59.7287;NS=93;NUMALT=1;ODDS=1.85759;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195692;QR=49660;RO=1386;RPL=5482;RPP=11907;RPPR=3012.67;RPR=0;RUN=1;SAF=0;SAP=11907;SAR=5482;SRF=0;SRP=3012.67;SRR=1386;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:7,15:7:252:15:540:-42.2688,0,-16.4063	0/1:69:46,23:46:1648:23:828:-54.073,0,-127.837	0/1:77:46,31:46:1656:31:1074:-73.7838,0,-126.087	1/1:158:0,158:0:0:158:5655:-508.858,-47.5627,0	0/1:67:27,40:27:957:40:1404:-106.427,0,-66.2733	0/1:35:17,18:17:604:18:648:-48.1158,0,-44.1546	0/1:84:33,51:33:1180:51:1817:-138.518,0,-81.1766	0/1:124:57,67:57:2032:67:2408:-179.648,0,-145.316	1/1:60:0,60:0:0:60:2137:-191.969,-18.0618,0	0/1:77:29,48:29:1040:48:1697:-129.821,0,-70.7351	0/1:40:21,19:21:756:19:669:-48.488,0,-56.3214	0/1:50:23,27:23:828:27:964:-72.0253,0,-59.7926	0/1:56:28,28:28:1004:28:1004:-73.8182,0,-73.8182	1/1:73:0,73:0:0:73:2620:-236.042,-21.9752,0	0/1:35:17,18:17:612:18:644:-47.7545,0,-44.8774	0/1:38:18,19:18:644:19:680:-50.0298,0,-46.7924	0/1:36:16,20:16:576:20:716:-53.9306,0,-41.3379	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:25:14,11:14:504:11:387:-27.6402,0,-38.1723	1/1:137:4,133:4:144:133:4738:-413.256,-27.9275,0	1/1:71:0,71:0:0:71:2552:-229.854,-21.3731,0	1/1:89:0,89:0:0:89:3155:-284.165,-26.7917,0	0/1:34:11,23:11:396:23:794:-61.5216,0,-25.7477	0/1:41:16,25:16:576:25:900:-68.9741,0,-39.8328	1/1:30:0,30:0:0:30:1050:-94.8017,-9.0309,0	0/1:280:107,173:107:3844:173:6189:-472.754,0,-261.665	1/1:167:0,167:0:0:167:5951:-535.679,-50.272,0	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	1/1:203:0,202:0:0:202:7229:-650.121,-60.8081,0	0/1:110:40,70:40:1421:70:2493:-191.508,0,-95.064	1/1:90:0,90:0:0:90:3232:-291.093,-27.0927,0	1/1:4:0,4:0:0:4:144:-13.312,-1.20412,0	0/1:5:3,2:3:108:2:72:-5.32995,0,-8.55901	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:125:0,125:0:0:125:4462:-401.6,-37.6288,0	0/1:202:76,126:76:2698:126:4505:-344.793,0,-182.254	0/1:42:19,23:19:684:23:828:-62.2009,0,-49.2471	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:100:40,60:40:1436:60:2152:-163.841,0,-99.3571	1/1:25:0,25:0:0:25:892:-80.5981,-7.52575,0	1/1:140:2,138:2:57:138:4922:-437.716,-36.7468,0	1/1:29:0,29:0:0:29:1029:-92.9142,-8.72987,0	1/1:28:0,28:0:0:28:1000:-90.313,-8.42884,0	1/1:83:0,83:0:0:83:2966:-267.16,-24.9855,0	1/1:120:0,120:0:0:120:4263:-383.846,-36.1236,0	1/1:168:0,168:0:0:168:6005:-540.026,-50.573,0	1/1:139:0,139:0:0:139:4972:-446.839,-41.8432,0	1/1:159:0,159:0:0:159:5644:-508.065,-47.8638,0	1/1:141:0,141:0:0:141:5029:-452.63,-42.4452,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:116:53,61:53:1889:61:2184:-162.149,0,-135.608	0/1:33:14,19:14:504:19:684:-51.9563,0,-35.7536	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:93:0,93:0:0:93:3299:-296.988,-27.9958,0	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3054	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:61:24,37:24:864:37:1324:-101.096,0,-59.7188	0/1:91:44,47:44:1584:47:1688:-124.811,0,-115.457	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:186:0,186:0:0:186:6665:-599.907,-55.9916,0	1/1:185:1,184:1:36:184:6610:-591.189,-52.0923,0	1/1:62:0,62:0:0:62:2201:-198.348,-18.6639,0	1/1:81:0,81:0:0:81:2897:-260.959,-24.3834,0	1/1:102:0,102:0:0:102:3616:-325.551,-30.7051,0	0/1:136:66,70:66:2376:70:2495:-183.579,0,-172.787	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:52:0,52:0:0:52:1857:-167.405,-15.6536,0	1/1:73:0,73:0:0:73:2620:-236.037,-21.9752,0	0/1:25:9,16:9:324:16:561:-43.2914,0,-21.9514	1/1:106:0,106:0:0:106:3782:-340.577,-31.9092,0	0/1:30:9,21:9:320:21:756:-59.3363,0,-20.1115	0/1:144:63,81:63:2260:81:2856:-213.877,0,-160.314	0/1:121:56,65:56:2016:65:2336:-174.072,0,-145.252	0/1:57:21,36:21:756:36:1296:-99.7852,0,-50.792	1/1:55:0,55:0:0:55:1946:-175.411,-16.5567,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:80:39,41:39:1400:41:1472:-108.06,0,-102.217	1/1:74:0,73:0:0:73:2624:-236.047,-21.9752,0	1/1:257:0,257:0:0:257:9161:-824.259,-77.3647,0	0/1:101:51,50:51:1836:50:1796:-131.514,0,-135.112	1/1:37:0,37:0:0:37:1317:-118.78,-11.1381,0	0/1:42:19,23:19:684:23:824:-61.8377,0,-49.2471	1/1:86:1,85:1:36:85:3048:-270.932,-22.2903,0	0/1:24:17,7:17:608:7:252:-15.8042,0,-47.8273	0/1:55:27,28:27:957:28:1008:-74.4751,0,-69.8872	0/1:55:39,16:39:1404:16:572:-35.2568,0,-110.102	0/1:30:20,10:20:720:10:360:-23.7134,0,-56.0979	0/1:74:48,25:48:1709:25:900:-58.9908,0,-131.764	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.2574	1/1:57:0,57:0:0:57:2019:-181.971,-17.1587,0	1/1:54:0,54:0:0:54:1925:-173.494,-16.2556,0
chr03	28416247	.	C	A	30015.4	PASS	AB=0.489322;ABP=6.72024;AC=49;AF=0.260638;AN=188;AO=1837;CIGAR=1X;DP=8006;DPB=8006;DPRA=0.853336;EPP=3992.01;EPPR=13390.1;GTI=1;LEN=1;MEANALT=1.01923;MQM=48.8802;MQMR=59.9118;NS=94;NUMALT=1;ODDS=0.763943;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65703;QR=220546;RO=6165;RPL=0;RPP=3992.01;RPPR=13390.1;RPR=1837;RUN=1;SAF=1837;SAP=3992.01;SAR=0;SRF=6165;SRP=13390.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:35,31:35:1252:31:1108:-79.3157,0,-93.1171	0/1:58:34,24:34:1212:24:860:-59.5962,0,-91.9266	0/1:180:91,89:91:3237:89:3200:-231.481,0,-237.366	0/0:176:175,0:175:6284:0:0:0,-52.6802,-564.776	0/1:12:6,6:6:216:6:216:-16.0709,0,-16.1782	0/1:20:8,12:8:284:12:428:-32.5122,0,-19.8711	0/1:35:23,12:23:824:12:432:-28.5566,0,-63.0071	0/1:120:68,52:68:2428:52:1841:-128.006,0,-182.652	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.522	0/1:77:49,28:49:1748:28:1004:-67.2046,0,-134.425	0/1:97:56,41:56:2008:41:1467:-102.363,0,-151.793	0/1:122:85,37:85:3036:37:1332:-82.4059,0,-236.689	0/1:97:52,45:52:1864:45:1616:-114.228,0,-138.811	0/0:102:102,0:102:3635:0:0:0,-30.7051,-327.338	0/1:99:50,49:50:1787:49:1764:-128.129,0,-131.31	0/1:91:45,46:45:1612:46:1644:-119.772,0,-117.976	0/1:41:20,21:20:720:21:748:-53.7031,0,-52.7865	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:35:22,13:22:792:13:468:-31.1501,0,-61.0696	0/0:168:168,0:168:6020:0:0:0,-50.573,-541.903	0/0:143:143,0:143:5101:0:0:0,-43.0473,-459.229	0/0:100:100,0:100:3568:0:0:0,-30.103,-321.329	0/1:140:55,85:55:1960:85:3037:-229.838,0,-134.424	0/1:54:22,32:22:792:32:1133:-85.4575,0,-55.3501	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.001	0/1:233:110,123:110:3924:123:4405:-324.943,0,-283.214	0/0:194:194,0:194:6945:0:0:0,-58.3998,-625.114	0/1:42:25,17:25:896:17:612:-42.4697,0,-68.3171	0/0:195:195,0:195:6988:0:0:0,-58.7008,-628.983	0/1:97:55,42:55:1980:42:1497:-105.075,0,-149.275	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:22:12,10:12:432:10:360:-25.6414,0,-32.5985	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:218:218,0:218:7823:0:0:0,-65.6245,-704.095	0/1:74:36,38:36:1296:38:1345:-98.2465,0,-94.6677	0/1:67:43,24:43:1544:24:860:-56.8869,0,-119.084	0/1:5:2,3:2:72:3:108:-8.5154,0,-5.33157	0/1:73:36,37:36:1292:37:1320:-95.9904,0,-94.6086	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.23	0/0:104:104,0:104:3708:0:0:0,-31.3071,-333.915	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/0:90:90,0:90:3190:0:0:0,-27.0927,-287.325	0/0:114:114,0:114:4061:0:0:0,-34.3174,-365.625	0/0:71:69,2:69:2461:2:72:0,-14.6136,-214.972	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/0:132:131,1:131:4692:1:36:0,-36.1377,-418.842	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.688	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:115:46,69:46:1652:69:2460:-183.566,0,-114.322	0/1:45:22,23:22:792:23:805:-58.8702,0,-58.0593	0/1:10:4,6:4:144:6:216:-16.6072,0,-10.3033	0/0:97:97,0:97:3476:0:0:0,-29.1999,-312.624	0/1:15:6,9:6:216:9:324:-24.8937,0,-15.2751	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:13:10,3:10:360:3:108:-6.14259,0,-28.8309	0/1:62:37,25:37:1324:25:892:-60.4264,0,-100.741	0/1:120:72,48:72:2584:48:1724:-118.384,0,-196.368	0/1:15:6,9:6:216:9:324:-24.8937,0,-15.2751	0/0:156:156,0:156:5545:0:0:0,-46.9607,-499.057	0/0:164:163,1:163:5832:1:36:0,-45.7824,-521.402	0/0:60:60,0:60:2120:0:0:0,-18.0618,-191.069	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.563	0/1:147:42,105:42:1504:105:3760:-292.134,0,-91.4032	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:23:15,8:15:540:8:288:-18.819,0,-42.0128	0/0:106:106,0:106:3791:0:0:0,-31.9092,-341.388	0/1:101:61,40:61:2184:40:1436:-97.3951,0,-166.422	0/1:129:72,57:72:2568:57:2024:-141.258,0,-192.537	0/1:181:79,102:79:2824:102:3627:-270.284,0,-199.909	0/1:47:24,23:24:852:23:824:-58.8958,0,-62.852	0/0:122:121,0:121:4335:0:0:0,-36.4246,-390.113	0/1:10:7,3:7:248:3:108:-6.97677,0,-19.6539	0/1:80:34,46:34:1224:46:1652:-124.087,0,-86.3846	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.082	0/0:157:157,0:157:5624:0:0:0,-47.2617,-506.277	0/1:71:36,35:36:1296:35:1260:-91.7427,0,-95.5708	0/0:111:111,0:111:3975:0:0:0,-33.4143,-357.938	0/1:71:34,37:34:1220:37:1320:-97.1371,0,-88.7337	0/0:147:147,0:147:5264:0:0:0,-44.2514,-473.839	0/1:15:8,7:8:288:7:252:-18.2954,0,-21.752	0/1:79:35,44:35:1233:44:1569:-116.497,0,-87.4907	0/1:76:40,36:40:1432:36:1288:-92.3164,0,-106.284	0/1:103:56,47:56:2016:47:1673:-118.445,0,-150.707	0/1:158:90,67:90:3211:67:2408:-167.865,0,-241.591	0/1:103:36,67:36:1288:67:2412:-185.17,0,-85.2175	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/0:138:137,0:137:4902:0:0:0,-41.2411,-440.961
chr03	28490606	.	A	C	22976.1	PASS	AB=0.451311;ABP=68.984;AC=54;AF=0.287234;AN=188;AO=1461;CIGAR=1X;DP=6448;DPB=6448;DPRA=0.873539;EPP=3175.53;EPPR=10806.1;GTI=6;LEN=1;MEANALT=1.05455;MQM=59.9822;MQMR=59.9805;NS=94;NUMALT=1;ODDS=0.0363408;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51943;QR=178558;RO=4983;RPL=1461;RPP=3175.53;RPPR=10806.1;RPR=0;RUN=1;SAF=1461;SAP=3175.53;SAR=0;SRF=4983;SRP=10823.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:145:79,66:79:2829:66:2355:-168.559,0,-211.197	0/1:128:71,57:71:2529:57:2012:-142.818,0,-189.315	0/0:139:139,0:139:4984:0:0:0,-41.8432,-448.679	0/1:45:24,21:24:860:21:739:-53.286,0,-64.1755	0/1:35:15,20:15:532:20:708:-53.5095,0,-37.677	0/1:73:45,28:45:1604:28:1008:-69.0612,0,-122.675	0/1:128:85,43:85:3044:43:1522:-98.741,0,-235.658	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/1:76:41,35:41:1476:35:1243:-89.2956,0,-110.258	0/1:48:15,33:15:540:33:1169:-91.0658,0,-34.4871	0/1:50:25,25:25:896:25:896:-65.9089,0,-65.9089	0/1:53:28,25:28:1008:25:900:-65.3664,0,-75.0818	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:41:23,18:23:828:18:644:-45.9484,0,-62.5019	0/1:37:26,11:26:936:11:396:-24.8446,0,-73.4214	0/1:50:24,26:24:860:26:908:-66.981,0,-62.6703	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:18:3,15:3:108:15:520:-41.7075,0,-4.65663	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.846	0/0:72:71,0:71:2529:0:0:0,-21.3731,-227.483	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/1:25:22,3:22:788:3:108:-2.54942,0,-63.7167	0/1:52:28,24:28:1004:24:864:-62.429,0,-75.0223	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/1:177:100,77:100:3557:77:2723:-192.028,0,-267.056	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/1:18:10,8:10:360:8:264:-18.6618,0,-27.3258	0/0:112:112,0:112:4028:0:0:0,-33.7154,-362.707	0/1:198:113,85:113:4064:85:3005:-211.019,0,-306.341	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:113:113,0:113:4059:0:0:0,-34.0164,-365.495	0/1:161:81,80:81:2908:80:2856:-208.812,0,-213.489	0/1:45:22,22:22:792:22:792:-58.0005,0,-58.0005	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:143:90,53:90:3217:53:1904:-128.59,0,-246.704	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:84:84,0:84:3020:0:0:0,-25.2865,-271.84	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.814	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.611	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:191:191,0:191:6837:0:0:0,-57.4967,-615.398	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:161:94,67:94:3364:67:2372:-165.271,0,-254.511	0/1:34:21,13:21:752:13:451:-30.6848,0,-57.7712	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.14	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:57:31,26:31:1112:26:920:-65.9583,0,-83.2326	0/1:80:49,31:49:1748:31:1103:-75.4974,0,-133.522	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:226:226,0:226:8070:0:0:0,-68.0328,-725.828	0/0:151:148,3:148:5316:3:108:0,-35.3804,-468.497	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:55:53,2:53:1884:2:72:0,-9.71993,-163.002	0/1:79:19,60:19:684:60:2148:-169.806,0,-38.109	0/0:17:16,1:16:576:1:36:0,-1.51923,-48.5767	0/1:52:30,22:30:1072:22:792:-55.9521,0,-81.1389	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:23:19,4:19:680:4:144:-6.38993,0,-54.6055	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.763	0/1:56:22,34:22:792:34:1208:-92.1684,0,-54.748	0/1:83:55,28:55:1976:28:985:-63.9753,0,-153.129	0/1:129:74,55:74:2645:55:1976:-139.282,0,-199.462	0/1:104:61,43:61:2176:43:1548:-108.306,0,-164.799	0/0:128:123,5:123:4412:5:180:0,-21.9798,-380.699	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:94:54,40:54:1944:40:1423:-100.069,0,-146.939	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016	0/1:93:48,45:48:1728:45:1606:-116.834,0,-127.81	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:71:34,37:34:1220:37:1320:-97.7288,0,-88.7337	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/1:25:20,5:20:716:5:165:-7.64785,0,-57.242	0/1:53:30,22:30:1076:22:792:-55.5923,0,-81.1395	0/1:46:19,27:19:676:27:931:-70.2515,0,-47.3206	0/1:34:15,19:15:536:19:665:-49.9394,0,-38.3398	0/1:79:44,34:44:1576:34:1211:-85.4555,0,-118.291	0/1:42:14,28:14:504:28:991:-76.8603,0,-33.0548	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.088	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307
chr03	28491844	.	A	G	162565	PASS	AB=0.484761;ABP=12.7394;AC=137;AF=0.728723;AN=188;AO=7707;CIGAR=1X;DP=10211;DPB=10211;DPRA=0;EPP=16625.8;EPPR=5409.98;GTI=1;LEN=1;MEANALT=1.09574;MQM=50.3468;MQMR=59.5878;NS=94;NUMALT=1;ODDS=2.57399;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=276030;QR=89438;RO=2494;RPL=7694;RPP=16625.8;RPPR=5409.98;RPR=13;RUN=1;SAF=0;SAP=16738.5;SAR=7707;SRF=0;SRP=5418.66;SRR=2494;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:39,47:39:1400:47:1688:-125.703,0,-100.409	0/1:77:29,48:29:1040:48:1728:-132.329,0,-70.7351	0/1:188:94,94:94:3376:94:3341:-243.479,0,-247.433	1/1:324:1,323:1:36:323:11563:-1029.7,-93.9354,0	0/1:60:41,19:41:1461:19:680:-43.3418,0,-113.695	0/1:42:23,19:23:824:19:684:-48.9728,0,-61.8294	0/1:161:91,70:91:3264:70:2500:-174.815,0,-245.422	0/1:177:85,92:85:3022:92:3288:-240.402,0,-218.504	0/1:111:57,54:57:2040:54:1944:-141.407,0,-150.451	0/1:81:34,47:34:1224:47:1680:-125.651,0,-85.9768	0/1:47:22,25:22:792:25:900:-66.7024,0,-57.4502	0/1:125:60,65:60:2144:65:2328:-171.541,0,-155.557	0/1:108:54,54:54:1944:54:1940:-141.826,0,-142.703	1/1:45:0,45:0:0:45:1608:-144.132,-13.5464,0	0/1:65:34,31:34:1220:31:1116:-80.6318,0,-90.4969	0/1:62:25,37:25:896:37:1319:-100.048,0,-62.2858	0/1:24:9,15:9:324:15:540:-41.6186,0,-22.2704	1/1:38:0,38:0:0:38:1364:-122.482,-11.4391,0	0/1:28:14,14:14:504:14:504:-36.8467,0,-37.263	1/1:246:1,245:1:36:245:8800:-781.219,-70.4669,0	1/1:169:0,168:0:0:168:6006:-538.619,-50.573,0	1/1:144:0,144:0:0:144:5164:-459.962,-43.3483,0	0/1:113:75,38:75:2696:38:1356:-87.5678,0,-208.832	0/1:87:47,40:47:1684:40:1436:-103.101,0,-125.65	1/1:111:0,111:0:0:111:3988:-357.598,-33.4143,0	0/1:303:143,160:143:5136:160:5744:-421.177,0,-370.332	1/1:287:0,286:0:0:286:10246:-918.302,-86.0946,0	0/1:30:8,22:8:288:22:792:-62.2937,0,-17.2365	1/1:317:0,317:0:0:317:11329:-1009.37,-95.4265,0	0/1:124:69,55:69:2476:55:1968:-139.038,0,-185.68	1/1:100:0,100:0:0:100:3572:-318.802,-30.103,0	1/1:23:0,23:0:0:23:824:-74.3464,-6.92369,0	0/1:22:13,9:13:468:9:316:-22.1075,0,-35.837	1/1:4:0,4:0:0:4:144:-13.2883,-1.20412,0	1/1:5:0,5:0:0:5:172:-15.7825,-1.50515,0	1/1:23:0,23:0:0:23:820:-73.944,-6.92369,0	1/1:189:0,189:0:0:189:6769:-603.485,-56.8947,0	0/1:187:80,107:80:2856:107:3824:-287.058,0,-200.957	0/1:68:35,32:35:1256:32:1148:-82.4042,0,-92.9622	0/1:7:2,5:2:72:5:180:-14.4133,0,-4.72951	0/1:211:101,110:101:3620:110:3940:-290.058,0,-262.436	1/1:37:0,37:0:0:37:1316:-118.422,-11.1381,0	1/1:272:0,272:0:0:272:9732:-872.485,-81.8802,0	1/1:47:0,47:0:0:47:1692:-151.668,-14.1484,0	1/1:58:0,58:0:0:58:2084:-186.836,-17.4597,0	1/1:125:0,125:0:0:125:4474:-396.993,-37.6288,0	1/1:162:0,161:0:0:161:5776:-518.03,-48.4658,0	1/1:190:0,190:0:0:190:6828:-610.603,-57.1957,0	1/1:116:0,116:0:0:116:4148:-370.432,-34.9195,0	1/1:89:1,88:1:36:88:3152:-278.346,-23.1934,0	1/1:186:0,186:0:0:186:6676:-596.246,-55.9916,0	1/1:5:0,5:0:0:5:180:-16.474,-1.50515,0	0/1:195:98,97:98:3516:97:3472:-252.901,0,-257.852	0/1:73:46,27:46:1648:27:964:-64.2264,0,-126.566	0/1:15:12,3:12:432:3:108:-5.54053,0,-34.7057	1/1:194:0,194:0:0:194:6947:-622.872,-58.3998,0	0/1:54:27,27:27:972:27:956:-69.6619,0,-71.4958	1/1:10:0,10:0:0:10:360:-32.2204,-3.0103,0	0/1:28:17,11:17:612:11:392:-26.9562,0,-46.9846	0/1:82:42,40:42:1508:40:1436:-103.375,0,-111.33	0/1:95:43,52:43:1548:52:1872:-138.101,0,-110.85	0/1:11:5,6:5:180:6:216:-16.3719,0,-13.2407	1/1:197:1,196:1:36:196:7032:-622.353,-55.7046,0	1/1:208:4,203:4:144:203:7276:-635.743,-49.3579,0	1/1:70:0,70:0:0:70:2487:-223.644,-21.0721,0	1/1:96:0,94:0:0:94:3368:-298.743,-28.2968,0	1/1:142:1,141:1:36:141:5060:-447.652,-39.148,0	0/1:180:115,65:115:4128:65:2332:-154.684,0,-317.491	1/1:58:1,57:1:36:57:2048:-180.641,-13.8615,0	0/1:99:54,45:54:1940:45:1620:-115.858,0,-145.074	1/1:39:0,39:0:0:39:1400:-125.084,-11.7402,0	0/1:44:22,22:22:788:22:792:-56.5583,0,-57.9995	1/1:164:0,163:0:0:163:5844:-523.239,-49.0679,0	0/1:153:79,74:79:2828:74:2664:-193.319,0,-208.4	0/1:157:71,86:71:2544:86:3065:-227.885,0,-181.938	0/1:241:119,121:119:4264:121:4348:-315.391,0,-311.116	0/1:115:61,54:61:2184:54:1932:-138.703,0,-162.196	1/1:94:0,93:0:0:93:3312:-296.785,-27.9958,0	0/1:26:9,17:9:324:17:608:-47.1234,0,-21.6791	0/1:131:74,57:74:2656:57:2046:-144.307,0,-199.832	1/1:161:1,160:1:36:160:5736:-510.918,-44.8676,0	1/1:210:0,210:0:0:210:7507:-669.6,-63.2163,0	0/1:60:31,29:31:1112:29:1027:-74.1695,0,-82.3295	1/1:77:0,77:0:0:77:2748:-244.945,-23.1793,0	0/1:47:22,25:22:780:25:888:-65.6906,0,-56.3388	1/1:138:0,138:0:0:138:4948:-442.278,-41.5421,0	0/1:31:21,10:21:756:10:356:-22.9683,0,-59.0353	0/1:80:50,30:50:1791:30:1067:-71.8186,0,-137.389	0/1:80:42,38:42:1512:38:1364:-98.5795,0,-112.282	0/1:48:22,26:22:788:26:928:-69.1747,0,-56.7954	0/1:104:61,43:61:2192:43:1540:-106.916,0,-165.923	0/1:80:56,24:56:2012:24:856:-52.5344,0,-157.254	1/1:118:0,118:0:0:118:4215:-376.932,-35.5215,0	1/1:100:0,100:0:0:100:3582:-319.722,-30.103,0
chr03	28547258	.	T	C	122680	PASS	AB=0.581517;ABP=201.618;AC=137;AF=0.728723;AN=188;AO=5894;CIGAR=1X;DP=7345;DPB=7345;DPRA=0;EPP=12801.7;EPPR=3138.62;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.5835;MQMR=59.9579;NS=94;NUMALT=1;ODDS=4.88747;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208281;QR=51498;RO=1448;RPL=5894;RPP=12801.7;RPPR=3138.62;RPR=0;RUN=1;SAF=5894;SAP=12801.7;SAR=0;SRF=1448;SRP=3147.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:88:34,54:34:1216:54:1932:-147.648,0,-83.2559	0/1:89:32,57:32:1135:57:2022:-155.428,0,-75.6664	1/1:138:0,138:0:0:138:4850:-436.645,-41.5421,0	0/1:26:8,18:8:288:18:640:-50.0114,0,-18.4406	0/1:31:9,22:9:324:22:773:-60.5455,0,-20.1739	0/1:64:26,38:26:936:38:1348:-102.33,0,-65.2935	0/1:98:25,73:25:881:73:2605:-205.095,0,-50.1049	0/1:54:21,33:21:752:33:1171:-89.4407,0,-51.7506	0/1:117:55,62:55:1967:62:2196:-162.682,0,-142.084	0/1:51:29,22:29:1032:22:773:-54.5379,0,-77.8409	0/1:57:25,32:25:896:32:1118:-83.7383,0,-63.8016	0/1:58:28,30:28:976:30:1049:-77.2444,0,-70.689	1/1:89:0,89:0:0:89:3122:-280.812,-26.7917,0	0/1:47:16,31:16:568:31:1084:-83.7205,0,-37.3035	0/1:54:28,26:28:976:26:921:-66.9459,0,-71.8941	0/1:83:36,46:36:1252:46:1602:-119.445,0,-87.9835	1/1:54:0,54:0:0:54:1905:-171.702,-16.2556,0	0/1:31:13,18:13:468:18:636:-48.2115,0,-33.1277	1/1:173:0,172:0:0:172:6130:-551.454,-51.7772,0	1/1:105:0,105:0:0:105:3759:-338.468,-31.6082,0	1/1:169:0,169:0:0:169:6022:-542.055,-50.8741,0	0/1:26:9,17:9:315:17:603:-46.7704,0,-20.8581	0/1:40:25,15:25:896:15:532:-36.1673,0,-68.9192	1/1:57:0,57:0:0:57:1997:-179.97,-17.1587,0	0/1:214:79,135:79:2824:135:4796:-367.372,0,-189.979	1/1:137:0,137:0:0:137:4852:-436.786,-41.2411,0	0/1:16:9,7:9:320:7:237:-16.8426,0,-24.3259	1/1:195:1,194:1:36:194:6935:-620.549,-55.1026,0	0/1:140:46,94:46:1635:94:3336:-258.227,0,-105.294	1/1:101:0,101:0:0:101:3541:-318.889,-30.404,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:31:15,16:15:527:16:567:-42.0272,0,-38.4283	1/1:8:0,8:0:0:8:273:-24.8968,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:0,12:0:0:12:424:-38.4953,-3.61236,0	1/1:138:0,138:0:0:138:4874:-438.809,-41.5421,0	0/1:170:57,113:57:2021:113:3968:-306.111,0,-130.986	0/1:62:28,34:28:995:34:1188:-88.544,0,-71.1991	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:110:50,60:50:1777:60:2136:-159.381,0,-127.098	1/1:58:0,58:0:0:58:2059:-185.572,-17.4597,0	1/1:115:0,115:0:0:115:4075:-366.892,-34.6185,0	1/1:41:0,41:0:0:41:1415:-127.635,-12.3422,0	1/1:47:0,47:0:0:47:1656:-149.319,-14.1484,0	1/1:67:0,67:0:0:67:2383:-214.666,-20.169,0	0/1:59:24,35:24:856:35:1211:-91.5285,0,-59.6003	1/1:118:0,118:0:0:118:4183:-376.469,-35.5215,0	1/1:118:0,118:0:0:118:4187:-376.998,-35.5215,0	1/1:134:0,134:0:0:134:4754:-428.002,-40.338,0	1/1:171:0,171:0:0:171:6022:-542.023,-51.4761,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:126:45,81:45:1590:81:2867:-220.304,0,-105.459	0/1:51:11,40:11:396:40:1423:-113.01,0,-20.6302	0/1:28:16,12:16:568:12:432:-30.7808,0,-43.023	1/1:88:0,88:0:0:88:3134:-282.256,-26.4906,0	0/1:15:7,8:7:252:8:280:-21.0215,0,-18.5135	1/1:8:0,8:0:0:8:280:-25.5377,-2.40824,0	0/1:21:6,15:6:216:15:517:-40.4857,0,-13.4689	0/1:54:22,32:22:779:32:1121:-84.9297,0,-54.1764	0/1:122:66,56:66:2349:56:1941:-138.23,0,-174.856	0/1:11:2,9:2:72:9:315:-25.3759,0,-3.52539	1/1:244:0,244:0:0:244:8628:-776.015,-73.4513,0	1/1:149:2,147:2:72:147:5149:-456.675,-38.0167,0	1/1:79:0,79:0:0:79:2797:-251.9,-23.7814,0	1/1:38:0,38:0:0:38:1346:-121.432,-11.4391,0	1/1:121:3,118:3:108:118:4169:-364.679,-26.3495,0	0/1:102:59,43:59:2108:43:1531:-106.595,0,-159.284	1/1:27:0,27:0:0:27:956:-86.3326,-8.12781,0	0/1:37:17,20:17:608:20:698:-51.9918,0,-43.9139	1/1:116:0,116:0:0:116:4044:-364.147,-34.9195,0	0/1:52:17,35:17:603:35:1251:-97.2384,0,-38.9459	1/1:99:0,98:0:0:98:3455:-310.761,-29.5009,0	0/1:73:34,39:34:1220:39:1356:-100.35,0,-88.0254	0/1:93:37,56:37:1328:56:1984:-150.385,0,-91.8264	0/1:79:34,45:34:1208:45:1574:-118.059,0,-85.2447	0/1:61:22,39:22:788:39:1362:-104.495,0,-52.882	1/1:139:2,137:2:72:137:4856:-430.118,-35.0064,0	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/1:106:31,75:31:1107:75:2662:-207.707,0,-68.031	1/1:99:0,99:0:0:99:3536:-318.399,-29.802,0	1/1:136:0,136:0:0:136:4783:-430.559,-40.9401,0	0/1:122:61,61:61:2152:61:2138:-155.959,0,-157.219	1/1:53:0,53:0:0:53:1864:-167.948,-15.9546,0	0/1:52:29,23:29:1044:23:820:-58.4666,0,-78.6212	1/1:103:0,103:0:0:103:3634:-327.266,-31.0061,0	0/1:33:19,14:19:676:14:500:-35.3988,0,-51.234	0/1:57:28,29:28:996:29:999:-73.0331,0,-72.7916	0/1:58:15,43:15:531:43:1473:-115.382,0,-30.6622	0/1:81:39,42:39:1392:42:1478:-108.925,0,-101.196	0/1:123:59,64:59:2089:64:2256:-166.214,0,-151.252	0/1:50:28,22:28:985:22:788:-56.1933,0,-73.91	1/1:72:0,72:0:0:72:2569:-231.449,-21.6742,0	1/1:67:1,66:1:36:66:2345:-207.707,-16.5707,0
chr03	28577302	.	C	A	65538.1	PASS	AB=0.408544;ABP=178.17;AC=133;AF=0.722826;AN=184;AO=3164;CIGAR=1X;DP=4597;DPB=4597;DPRA=16.8278;EPP=6873.55;EPPR=3112.56;GTI=2;LEN=1;MEANALT=1.01099;MQM=59.9927;MQMR=60;NS=92;NUMALT=1;ODDS=0.585853;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113346;QR=51131;RO=1432;RPL=3164;RPP=6873.55;RPPR=3112.56;RPR=0;RUN=1;SAF=0;SAP=6873.55;SAR=3164;SRF=0;SRP=3112.56;SRR=1432;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:39:25,14:25:900:14:500:-33.596,0,-69.5808	0/1:107:67,40:67:2382:40:1432:-96.9674,0,-182.424	1/1:137:0,137:0:0:137:4907:-441.781,-41.2411,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:73:22,51:22:773:51:1800:-140.303,0,-47.9143	0/1:48:21,27:21:733:27:972:-73.3485,0,-51.8402	0/1:54:33,21:33:1180:21:745:-51.1178,0,-90.2524	0/1:73:30,43:30:1076:43:1544:-117.278,0,-75.1777	0/1:25:11,14:11:392:14:504:-38.1723,0,-28.0943	0/1:74:51,23:51:1836:23:828:-52.5679,0,-143.244	0/1:61:38,23:38:1364:23:824:-56.1205,0,-104.698	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:74:55,19:55:1976:19:684:-39.6141,0,-155.838	0/1:33:19,14:19:680:14:504:-35.7641,0,-51.5952	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	1/1:72:0,72:0:0:72:2576:-232.089,-21.6742,0	1/1:103:0,103:0:0:103:3696:-332.842,-31.0061,0	1/1:55:0,55:0:0:55:1942:-175.052,-16.5567,0	0/1:50:25,24:25:881:24:864:-62.9723,0,-64.4959	0/1:33:14,19:14:500:19:684:-51.9563,0,-35.4022	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:125:94,31:94:3323:31:1116:-63.1229,0,-261.657	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	1/1:109:0,109:0:0:109:3912:-352.272,-32.8123,0	0/1:76:34,42:34:1205:42:1496:-112.056,0,-85.8756	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:70:33,37:33:1146:37:1328:-98.7501,0,-82.3696	0/1:37:28,9:28:1004:9:324:-18.3677,0,-79.5378	.:.:.:.:.:.:.:.	0/1:70:39,31:39:1396:31:1101:-78.3263,0,-104.867	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:52:1,51:1:36:51:1832:-161.563,-12.0553,0	1/1:31:1,30:1:36:30:1076:-93.5546,-5.73366,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:42:24,18:24:860:18:648:-46.0086,0,-65.0786	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:72:42,30:42:1512:30:1076:-75.4787,0,-114.7	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:23:13,10:13:453:10:356:-25.4576,0,-34.1759	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:44:23,21:23:824:21:752:-54.7609,0,-61.238	0/1:62:42,20:42:1508:20:720:-46.4649,0,-117.351	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:186:0,186:0:0:186:6669:-600.284,-55.9916,0	1/1:82:1,81:1:36:81:2904:-257.997,-21.0862,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	0/1:82:62,20:62:2194:20:712:-39.7222,0,-173.038	1/1:21:0,21:0:0:21:737:-66.6506,-6.32163,0	0/1:35:17,18:17:612:18:640:-47.3933,0,-44.8774	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:73:0,73:0:0:73:2611:-235.238,-21.9752,0	0/1:88:40,48:40:1421:48:1715:-128.099,0,-101.695	0/1:57:28,29:28:1004:29:1035:-76.3044,0,-73.5172	0/1:159:104,55:104:3740:55:1980:-130.611,0,-288.935	0/1:45:32,13:32:1148:13:468:-28.9133,0,-90.0835	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/1:75:37,38:37:1313:38:1364:-100.483,0,-95.8924	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	1/1:79:0,79:0:0:79:2819:-253.95,-23.7814,0	0/1:47:25,22:25:900:22:788:-57.0964,0,-67.1726	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:32:23,9:23:819:9:324:-19.8729,0,-64.3986	1/1:60:1,59:1:36:59:2115:-187.021,-14.4635,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:39:22,17:22:788:17:612:-43.6733,0,-59.5046	0/1:42:31,11:31:1104:11:396:-23.3395,0,-87.0274	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	0/1:61:39,22:39:1396:22:783:-52.4301,0,-107.576	0/1:64:55,9:55:1968:9:320:-9.87644,0,-158.129	1/1:100:0,100:0:0:100:3555:-320.155,-30.103,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0
chr03	28656714	.	AAAG	GAAG,GAAA	223106	PASS	AB=0.561549,0.4348;ABP=165.265,185.082;AC=134,52;AF=0.72043,0.27957;AN=186;AO=8326,2156;CIGAR=1X3M,1X2M1X;DP=10529;DPB=10532.8;DPRA=57.212,0.772241;EPP=18082.7,4684.7;EPPR=5.18177;GTI=4;LEN=1,4;MEANALT=2.07609,2.40351;MQM=59.6101,59.5979;MQMR=60;NS=93;NUMALT=2;ODDS=5.64663;PAIRED=0,0;PAIREDR=0;PAO=3.5,3.5;PQA=124,124;PQR=144;PRO=4;QA=297668,73451;QR=30;RO=1;RPL=8326,2156;RPP=18082.7,4684.7;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=8326,2156;SAP=18082.7,4684.7;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:50:0,25,25:0:0:25,25:896,871:-144.261,-71.1798,-63.6541,-73.4346,0,-65.9089	1/2:107:0,61,46:0:0:61,46:2181,1543:-303.072,-125.233,-106.87,-178.183,0,-164.336	1/2:130:0,75,55:0:0:75,55:2678,1893:-372.115,-154.082,-131.505,-218.383,0,-201.826	1/1:193:0,192,0:0:0:192,0:6865,0:-617.403,-57.7978,0,-617.403,-57.7978,-617.403	1/2:48:0,34,13:0:0:34,13:1220,456:-136.553,-37.1607,-26.9256,-99.45,0,-95.5366	1/2:73:0,36,37:0:0:36,37:1294,1268:-208.584,-103.278,-92.4412,-105.656,0,-94.5181	1/2:132:0,94,37:0:0:94,37:3333,1241:-371.504,-100.486,-72.1893,-271,0,-259.862	1/2:195:0,111,83:0:0:111,83:3973,2827:-553.317,-229.353,-195.938,-324.012,0,-299.026	1/2:92:0,55,37:0:0:55,37:1972,1295:-266.517,-105.712,-89.1549,-161.159,0,-150.021	1/2:109:0,72,37:0:0:72,37:2564,1234:-309.187,-100.217,-78.5427,-209.311,0,-198.173	1/2:66:0,31,35:0:0:31,35:1108,1167:-185.11,-94.7637,-85.4318,-90.692,0,-80.156	1/2:97:0,43,54:0:0:43,54:1533,1868:-276.95,-151.999,-139.055,-125.302,0,-109.046	1/2:76:0,41,35:0:0:41,35:1468,1174:-215.101,-95.3906,-83.0484,-120.056,0,-109.52	1/1:86:0,86,0:0:0:86,0:3063,0:-275.885,-25.8886,0,-275.885,-25.8886,-275.885	1/2:82:0,47,35:0:0:47,35:1684,1205:-235.544,-98.2009,-84.0525,-137.693,0,-127.157	1/2:43:0,20,23:0:0:20,23:716,789:-122.757,-64.3607,-58.3401,-58.7471,0,-51.8234	1/2:48:0,26,22:0:0:26,22:928,722:-134.306,-58.6358,-50.8091,-76.0115,0,-69.3888	1/1:65:0,63,1:0:0:63,1:2241,35:-201.58,-18.9649,0,-198.733,-16.1217,-198.432	1/2:25:0,12,13:0:0:12,13:424,433:-69.9159,-35.3753,-31.7629,-34.8841,0,-30.9707	1/1:235:0,234,0:0:0:234,0:8368,0:-752.531,-70.441,0,-752.531,-70.441,-752.531	1/1:76:0,76,0:0:0:76,0:2692,0:-242.309,-22.8783,0,-242.309,-22.8783,-242.309	1/1:210:0,209,0:0:0:209,0:7478,0:-672.774,-62.9153,0,-672.774,-62.9153,-672.774	1/2:144:0,80,63:0:0:80,63:2852,2162:-407.959,-175.507,-151.425,-232.441,0,-213.476	1/2:161:0,114,45:0:0:114,45:4059,1559:-457.423,-126.75,-92.4325,-330.725,0,-317.179	1/1:107:0,107,0:0:0:107,0:3848,0:-346.51,-32.2102,0,-346.51,-32.2102,-346.51	1/2:373:0,221,150:0:0:221,150:7920,5111:-1060.58,-414.705,-348.178,-645.937,0,-600.783	1/1:264:0,261,0:0:0:261,0:9353,0:-841.036,-78.5688,0,-841.036,-78.5688,-841.036	1/2:45:0,17,28:0:0:17,28:608,950:-126.683,-77.3744,-72.2569,-49.6579,0,-41.2291	1/1:267:0,266,0:0:0:266,0:9539,0:-858.064,-80.074,0,-858.064,-80.074,-858.064	1/2:126:0,79,47:0:0:79,47:2823,1584:-358.613,-128.68,-104.899,-230.277,0,-216.128	1/1:277:0,274,0:0:0:274,0:9788,0:-880.199,-82.4822,0,-880.199,-82.4822,-880.199	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:13:0,9,4:0:0:9,4:324,134:-37.6318,-11.1859,-8.47666,-26.7883,0,-25.5842	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:4:0,4,0:0:0:4,0:144,0:-13.3052,-1.20412,0,-13.3052,-1.20412,-13.3052	1/1:244:0,243,0:0:0:243,0:8684,0:-781.065,-73.1503,0,-781.065,-73.1503,-781.065	1/2:264:0,159,104:0:0:159,104:5685,3588:-754.561,-291.463,-243.599,-463.089,0,-431.781	1/2:53:0,32,21:0:0:32,21:1144,709:-151.085,-57.7936,-48.1606,-93.6366,0,-87.3149	.:.:.:.:.:.:.:.	1/2:141:0,76,65:0:0:76,65:2700,2177:-396.629,-176.618,-153.74,-220.355,0,-200.788	1/1:24:0,24,0:0:0:24,0:831,0:-75.1023,-7.22472,0,-75.1023,-7.22472,-75.1023	1/1:199:0,199,0:0:0:199,0:7130,0:-641.593,-59.905,0,-641.593,-59.905,-641.593	1/1:75:0,75,0:0:0:75,0:2671,0:-240.546,-22.5773,0,-240.546,-22.5773,-240.546	1/1:86:0,84,0:0:0:84,0:2992,0:-269.117,-25.2865,0,-269.117,-25.2865,-269.117	1/1:116:0,115,0:0:0:115,0:4127,0:-371.136,-34.6185,0,-371.136,-34.6185,-371.136	1/2:60:0,24,36:0:0:24,36:849,1207:-167.239,-98.0818,-90.8571,-69.5031,0,-58.666	1/1:214:1,212,0:1:30:212,0:7577,0:-678.913,-61.3798,0,-679.214,-63.8184,-681.612	1/1:136:0,136,0:0:0:136,0:4870,0:-438.162,-40.9401,0,-438.162,-40.9401,-438.162	1/1:131:0,131,0:0:0:131,0:4685,0:-421.687,-39.4349,0,-421.687,-39.4349,-421.687	1/1:237:0,235,0:0:0:235,0:8411,0:-756.466,-70.7421,0,-756.466,-70.7421,-756.466	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:126:0,95,31:0:0:95,31:3381,1034:-359.526,-84.0273,-55.4295,-275.838,0,-266.506	1/2:46:0,27,18:0:0:27,18:954,611:-127.228,-49.5298,-41.402,-77.6841,0,-72.2656	1/2:6:0,4,2:0:0:4,2:144,68:-17.6103,-5.85565,-4.65153,-12.1011,0,-11.4991	1/1:160:0,159,0:0:0:159,0:5691,0:-511.883,-47.8638,0,-511.883,-47.8638,-511.883	1/2:70:0,38,31:0:0:38,31:1364,1081:-199.157,-87.9009,-76.461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chr03	28656941	.	TC	TT,CT	557075	PASS	AB=0.493944,0.50503;ABP=6.11393,5.15101;AC=137,51;AF=0.728723,0.271277;AN=188;AO=15475,4937;CIGAR=1M1X,2X;DP=20438;DPB=20438.5;DPRA=0,0.883883;EPP=33606.5,10723.6;EPPR=29.068;GTI=0;LEN=1,2;MEANALT=1.80851,2.12698;MQM=59.8498,59.6216;MQMR=60;NS=94;NUMALT=2;ODDS=22.5182;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=550866,173434;QR=430;RO=12;RPL=8895,2845;RPP=755.024,252.402;RPPR=3.73412;RPR=6580,2092;RUN=1,1;SAF=8895,2845;SAP=755.024,252.402;SAR=6580,2092;SRF=7;SRP=3.73412;SRR=5;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:220:0,120,100:0:0:120,100:4268,3434:-626.938,-279.157,-243.033,-348.129,0,-318.026	1/2:169:0,101,68:0:0:101,68:3583,2403:-487.802,-195.911,-165.507,-292.244,0,-271.774	1/2:277:2,134,141:2:72:134,141:4783,4962:-787.114,-397.792,-363.329,-384.044,0,-347.474	1/1:678:1,677,0:1:36:677,0:24100,0:-2164.7,-200.5,0,-2165,-203.797,-2167.94	1/2:218:0,112,106:0:0:112,106:3992,3762:-632.219,-306.822,-273.106,-325.753,0,-293.844	1/2:115:0,67,48:0:0:67,48:2398,1722:-336.337,-140.816,-120.647,-195.879,0,-181.43	1/2:236:0,103,133:0:0:103,133:3669,4635:-676.302,-377.256,-346.25,-299.399,0,-259.362	1/2:337:0,173,163:0:0:173,163:6169,5727:-968.768,-465.958,-413.88,-502.804,0,-453.736	1/2:372:0,195,176:0:0:195,176:6918,6227:-1070.89,-507.255,-448.554,-563.786,0,-510.805	1/2:246:0,124,122:0:0:124,122:4416,4302:-710.407,-350.62,-313.293,-360.141,0,-323.416	1/2:86:0,48,38:0:0:48,38:1716,1342:-249.552,-109.631,-95.1815,-140.276,0,-128.837	1/2:243:0,142,101:0:0:142,101:4979,3552:-694.549,-289.384,-246.638,-405.516,0,-375.112	1/2:223:0,119,104:0:0:119,104:4236,3614:-639.257,-294.08,-258.258,-345.528,0,-314.221	1/1:147:0,147,0:0:0:147,0:5239,0:-471.646,-44.2514,0,-471.646,-44.2514,-471.646	1/2:214:0,116,98:0:0:116,98:4140,3454:-619.012,-281.542,-246.622,-337.825,0,-308.324	1/2:164:0,78,86:0:0:78,86:2763,3045:-472.483,-248.346,-224.866,-224.49,0,-198.602	1/2:81:0,47,34:0:0:47,34:1676,1194:-234.115,-97.4953,-83.3469,-136.973,0,-126.738	1/1:125:0,125,0:0:0:125,0:4459,0:-401.476,-37.6288,0,-401.476,-37.6288,-401.476	1/2:63:0,31,31:0:0:31,31:1095,1100:-178.79,-89.6172,-80.2853,-89.1676,0,-79.8356	1/1:395:0,394,0:0:0:394,0:14117,0:-1269.87,-118.606,0,-1269.87,-118.606,-1269.87	1/1:435:0,435,0:0:0:435,0:15428,0:-1388.22,-130.948,0,-1388.22,-130.948,-1388.22	1/1:155:0,155,0:0:0:155,0:5502,0:-495.306,-46.6597,0,-495.306,-46.6597,-495.306	1/2:310:0,133,177:0:0:133,177:4735,6191:-889.894,-503.984,-463.947,-386.263,0,-332.981	1/2:252:0,151,101:0:0:151,101:5349,3530:-723.137,-287.402,-241.946,-436.086,0,-405.682	1/1:179:0,179,0:0:0:179,0:6359,0:-572.384,-53.8844,0,-572.384,-53.8844,-572.384	1/2:579:0,279,300:0:0:279,300:9972,10510:-1668.56,-855.502,-771.515,-813.411,0,-723.102	1/1:223:0,222,0:0:0:222,0:7890,0:-709.882,-66.8287,0,-709.882,-66.8287,-709.882	1/2:81:0,36,45:0:0:36,45:1288,1589:-234.442,-129.41,-118.573,-105.387,0,-91.8402	1/1:446:0,445,1:0:0:445,1:15922,36:-1432.29,-133.958,0,-1429.35,-130.661,-1429.05	1/2:288:0,158,129:0:0:158,129:5587,4506:-821.342,-366.327,-318.764,-455.026,0,-416.194	1/1:243:0,243,0:0:0:243,0:8586,0:-772.701,-73.1503,0,-772.701,-73.1503,-772.701	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/2:40:0,20,20:0:0:20,20:716,696:-115.335,-56.9408,-50.9202,-58.7471,0,-52.7265	1/1:29:0,29,0:0:0:29,0:1037,0:-93.6436,-8.72987,0,-93.6436,-8.72987,-93.6436	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/1:471:1,470,0:1:36:470,0:16740,0:-1502.65,-138.187,0,-1502.95,-141.484,-1505.89	1/2:187:0,96,91:0:0:96,91:3419,3155:-534.511,-255.843,-226.944,-279.019,0,-251.625	1/2:103:0,57,46:0:0:57,46:2021,1606:-295.605,-130.954,-113.795,-165.002,0,-151.155	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:354:0,172,182:0:0:172,182:6149,6422:-1024.64,-523.268,-471.491,-501.723,0,-446.936	1/1:66:0,66,0:0:0:66,0:2350,0:-211.758,-19.868,0,-211.758,-19.868,-211.758	1/1:443:0,443,0:0:0:443,0:15792,0:-1420.67,-133.356,0,-1420.67,-133.356,-1420.67	1/1:130:0,130,0:0:0:130,0:4597,0:-413.866,-39.1339,0,-413.866,-39.1339,-413.866	1/1:136:0,136,0:0:0:136,0:4820,0:-433.824,-40.9401,0,-433.824,-40.9401,-433.824	1/1:275:0,275,0:0:0:275,0:9795,0:-881.497,-82.7833,0,-881.497,-82.7833,-881.497	1/2:222:0,116,105:0:0:116,105:4151,3715:-641.063,-302.57,-267.65,-338.489,0,-306.881	1/1:468:0,467,0:0:0:467,0:16609,0:-1493.93,-140.581,0,-1493.93,-140.581,-1493.93	1/1:242:0,241,1:0:0:241,1:8536,36:-767.852,-72.5482,0,-764.914,-69.251,-764.613	1/1:292:0,292,0:0:0:292,0:10422,0:-937.895,-87.9008,0,-937.895,-87.9008,-937.895	1/1:256:0,255,1:0:0:255,1:9121,36:-820.336,-76.7627,0,-817.399,-73.4654,-817.098	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/2:186:0,83,103:0:0:83,103:2946,3622:-535.164,-295.148,-270.162,-240.369,0,-209.363	1/2:196:0,88,108:0:0:88,108:3147,3798:-566.1,-309.493,-283.003,-256.962,0,-224.45	1/2:24:0,8,16:0:0:8,16:2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chr03	28656958	.	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chr03	28656991	.	C	A	35054.7	PASS	AB=0.511204;ABP=7.43826;AC=51;AF=0.274194;AN=186;AO=2079;CIGAR=1X;DP=8832;DPB=8832;DPRA=0.717706;EPP=4517.5;EPPR=14667;GTI=1;LEN=1;MEANALT=1;MQM=59.5493;MQMR=59.8156;NS=93;NUMALT=1;ODDS=2.25184;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74329;QR=240873;RO=6753;RPL=2079;RPP=4517.5;RPPR=14667;RPR=0;RUN=1;SAF=0;SAP=4517.5;SAR=2079;SRF=0;SRP=14667;SRR=6753;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:35,42:35:1241:42:1470:-109.411,0,-88.6035	0/1:51:30,21:30:1050:21:752:-51.8738,0,-79.4528	0/1:113:58,55:58:2073:55:1961:-142.689,0,-152.822	0/0:328:328,0:328:11736:0:0:0,-98.7378,-1056.08	0/1:88:40,48:40:1440:48:1728:-129.275,0,-103.407	0/1:71:50,21:50:1800:21:756:-46.9941,0,-140.881	0/1:108:54,54:54:1921:54:1932:-141.572,0,-140.584	0/1:137:55,82:55:1946:82:2948:-224.21,0,-134.115	0/1:155:77,78:77:2757:78:2777:-203.486,0,-201.708	0/1:92:47,45:47:1662:45:1611:-117.577,0,-122.169	0/1:33:24,9:24:860:9:320:-19.2084,0,-67.5974	0/1:108:64,44:64:2296:44:1565:-108.551,0,-174.37	0/1:108:64,44:64:2296:44:1572:-109.26,0,-174.39	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:117:57,60:57:2029:60:2137:-157.323,0,-147.59	0/1:59:30,29:30:1080:29:1040:-76.1005,0,-78.8134	0/1:38:24,14:24:864:14:504:-34.2413,0,-66.6434	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.919	0/1:28:18,10:18:648:10:360:-24.3155,0,-50.223	0/0:157:157,0:157:5636:0:0:0,-47.2617,-507.359	0/0:178:178,0:178:6335:0:0:0,-53.5833,-570.223	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.262	0/1:124:48,76:48:1709:76:2728:-208.425,0,-116.68	0/1:86:49,37:49:1760:37:1328:-93.9337,0,-132.795	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.808	0/1:280:132,148:132:4720:148:5281:-391.076,0,-340.556	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/1:44:15,29:15:540:29:1040:-80.646,0,-35.6912	0/0:178:178,0:178:6343:0:0:0,-53.5833,-570.873	0/1:121:59,62:59:2090:62:2224:-163.156,0,-151.942	0/0:109:109,0:109:3863:0:0:0,-32.8123,-347.86	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:249:249,0:249:8902:0:0:0,-74.9565,-801.102	0/1:64:33,31:33:1188:31:1104:-80.2684,0,-87.9581	0/1:49:25,24:25:896:24:864:-63.3148,0,-66.1983	.:.:.:.:.:.:.:.	0/1:139:61,78:61:2169:78:2800:-210.392,0,-153.631	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:203:203,0:203:7262:0:0:0,-61.1091,-652.782	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.316	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/0:98:98,0:98:3483:0:0:0,-29.5009,-313.677	0/1:82:46,36:46:1656:36:1296:-92.1452,0,-124.636	0/0:212:212,0:212:7541:0:0:0,-63.8184,-678.725	0/0:66:66,0:66:2312:0:0:0,-19.868,-208.331	0/0:123:123,0:123:4386:0:0:0,-37.0267,-394.911	0/0:112:112,0:112:3975:0:0:0,-33.7154,-357.448	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:49:26,23:26:928:23:828:-60.0846,0,-68.9815	0/1:79:35,44:35:1245:44:1576:-118.345,0,-88.5713	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/0:117:117,0:117:4147:0:0:0,-35.2205,-373.342	0/1:47:12,35:12:432:35:1218:-95.7318,0,-25.0704	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:19:9,10:9:324:10:360:-26.9673,0,-23.7863	0/1:132:77,55:77:2753:55:1968:-137.649,0,-208.246	0/1:87:35,52:35:1260:52:1864:-141.845,0,-87.5159	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:141:141,0:141:5027:0:0:0,-42.4452,-451.856	0/0:190:190,0:190:6727:0:0:0,-57.1957,-605.492	0/0:98:98,0:98:3497:0:0:0,-29.5009,-314.916	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.313	0/0:119:119,0:119:4261:0:0:0,-35.8226,-383.537	0/1:65:15,50:15:536:50:1796:-142.339,0,-29.0079	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:29:12,17:12:432:17:608:-46.3045,0,-30.4913	0/0:43:42,1:42:1467:1:36:0,-9.34601,-128.718	0/1:12:5,7:5:165:7:248:-19.0518,0,-11.5612	0/0:112:112,0:112:3994:0:0:0,-33.7154,-358.236	0/1:83:33,50:33:1176:50:1762:-133.848,0,-81.1623	0/1:180:92,88:92:3240:88:3156:-230.048,0,-237.299	0/1:129:64,65:64:2277:65:2332:-171.304,0,-166.332	0/1:97:56,41:56:1981:41:1456:-102.136,0,-149.355	0/0:123:123,0:123:4322:0:0:0,-37.0267,-388.816	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:115:59,56:59:2124:56:1982:-144.028,0,-156.81	0/0:123:123,0:123:4375:0:0:0,-37.0267,-392.984	0/0:428:428,0:428:15222:0:0:0,-128.841,-1369.67	0/1:57:28,29:28:1008:29:1040:-76.751,0,-73.8776	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/1:63:30,33:30:1080:33:1184:-87.6216,0,-78.5011	0/0:159:159,0:159:5678:0:0:0,-47.8638,-511.134	0/1:46:25,21:25:900:21:752:-54.1589,0,-67.4736	0/1:71:35,36:35:1256:36:1292:-95.1984,0,-91.1938	0/1:81:42,39:42:1508:39:1385:-100.547,0,-111.621	0/1:37:17,20:17:608:20:720:-53.4986,0,-43.9139	0/1:73:31,42:31:1101:42:1508:-114.03,0,-77.4232	0/1:96:35,61:35:1260:61:2192:-168.635,0,-84.8066	0/0:201:199,2:199:7106:2:72:0,-53.6752,-632.764	0/0:140:140,0:140:4995:0:0:0,-42.1442,-449.694
chr03	28686336	.	T	A	283422	PASS	AB=0.510345;ABP=8.80588;AC=138;AF=0.734043;AN=188;AO=10493;CIGAR=1X;DP=13565;DPB=13565;DPRA=0;EPP=22788.3;EPPR=6636.86;GTI=0;LEN=1;MEANALT=1.09574;MQM=59.8782;MQMR=59.9912;NS=94;NUMALT=1;ODDS=17.2199;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=372659;QR=109264;RO=3059;RPL=4884;RPP=111.786;RPPR=128.827;RPR=5609;RUN=1;SAF=4884;SAP=111.786;SAR=5609;SRF=1318;SRP=130.025;SRR=1741;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:20,40:20:716:40:1405:-108.682,0,-46.7059	0/1:49:21,28:21:752:28:999:-75.4179,0,-53.2558	0/1:140:63,77:63:2260:77:2731:-203.885,0,-161.518	1/1:499:3,496:3:108:496:17606:-1574.09,-140.139,0	0/1:60:19,41:19:680:41:1476:-115.074,0,-43.4674	0/1:54:18,36:18:639:36:1247:-96.2504,0,-41.5826	0/1:176:83,93:83:2928:93:3313:-245.404,0,-210.774	0/1:85:55,30:55:1963:30:1076:-71.5644,0,-151.357	0/1:141:62,79:62:2209:79:2806:-210.274,0,-156.628	0/1:249:114,135:114:4043:135:4802:-356.891,0,-289.102	0/1:105:56,49:56:2003:49:1735:-124.826,0,-148.935	0/1:100:48,52:48:1719:52:1827:-134.534,0,-124.892	0/1:75:38,37:38:1338:37:1324:-96.8808,0,-98.1412	1/1:125:0,125:0:0:125:4451:-400.763,-37.6288,0	0/1:165:81,84:81:2899:84:3011:-221.55,0,-211.475	0/1:119:62,56:62:2224:56:1995:-143.942,0,-164.543	0/1:44:28,16:28:1004:16:568:-38.2065,0,-77.4305	1/1:32:0,32:0:0:32:1137:-102.636,-9.63296,0	0/1:41:21,20:21:740:20:720:-52.7865,0,-54.5811	1/1:133:1,132:1:36:132:4684:-418.109,-36.4387,0	1/1:287:2,283:2:72:283:10073:-899.417,-79.3167,0	1/1:81:0,81:0:0:81:2867:-258.266,-24.3834,0	0/1:209:91,118:91:3255:118:4207:-315.896,0,-230.255	0/1:163:69,91:69:2460:91:3182:-238.085,0,-173.143	1/1:68:0,68:0:0:68:2424:-218.273,-20.47,0	0/1:570:308,262:308:10978:262:9277:-663.31,0,-816.329	1/1:326:0,326:0:0:326:11580:-1041.76,-98.1358,0	0/1:61:33,28:33:1175:28:996:-71.5921,0,-87.6941	1/1:344:0,344:0:0:344:12182:-1096.18,-103.554,0	0/1:217:105,112:105:3768:112:3991:-294.058,0,-273.99	1/1:292:0,292:0:0:292:10363:-932.501,-87.9008,0	1/1:13:0,13:0:0:13:468:-42.4419,-3.91339,0	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	1/1:17:0,17:0:0:17:603:-54.5995,-5.11751,0	1/1:381:0,381:0:0:381:13560:-1220.11,-114.692,0	0/1:215:84,130:84:3012:130:4656:-354.349,0,-206.531	0/1:45:20,25:20:712:25:891:-66.9615,0,-50.8603	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:239:111,128:111:3980:128:4536:-336.463,0,-286.444	1/1:64:0,64:0:0:64:2275:-204.991,-19.2659,0	1/1:190:0,190:0:0:190:6734:-604.933,-57.1957,0	1/1:136:0,136:0:0:136:4846:-436.295,-40.9401,0	1/1:105:0,105:0:0:105:3683:-331.674,-31.6082,0	1/1:167:0,167:0:0:167:5916:-532.495,-50.272,0	0/1:70:28,42:28:1008:42:1471:-111.506,0,-69.9643	1/1:298:0,298:0:0:298:10537:-948.252,-89.7069,0	1/1:149:0,149:0:0:149:5306:-477.676,-44.8535,0	1/1:319:1,317:1:36:317:11264:-1010.05,-92.4891,0	1/1:164:0,164:0:0:164:5830:-524.446,-49.3689,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:87:38,49:38:1364:49:1751:-131.679,0,-96.8711	0/1:86:41,45:41:1451:45:1607:-119.031,0,-104.979	0/1:15:7,8:7:252:8:273:-20.3846,0,-18.5135	1/1:258:0,258:0:0:258:9188:-825.743,-77.6657,0	0/1:92:47,44:47:1679:44:1564:-113.298,0,-123.643	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:31:11,20:11:396:20:720:-55.7968,0,-26.6508	0/1:133:64,69:64:2292:69:2464:-181.975,0,-166.504	0/1:191:100,91:100:3576:91:3235:-233.848,0,-264.551	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:365:0,365:0:0:365:12928:-1163.35,-109.876,0	1/1:270:2,268:2:72:268:9480:-846.334,-74.4414,0	1/1:132:0,132:0:0:132:4712:-424.145,-39.736,0	1/1:105:0,104:0:0:104:3694:-332.302,-31.3071,0	1/1:250:0,250:0:0:250:8879:-799.101,-75.2575,0	0/1:208:144,64:144:5159:64:2253:-140.396,0,-401.835	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	0/1:66:26,40:26:927:40:1432:-109.296,0,-63.8794	1/1:130:0,130:0:0:130:4617:-415.691,-39.1339,0	0/1:65:38,27:38:1351:27:954:-66.607,0,-102.323	1/1:109:1,108:1:36:108:3822:-340.448,-29.214,0	0/1:95:38,57:38:1364:57:2040:-154.994,0,-94.4629	0/1:238:107,131:107:3836:131:4632:-345.394,0,-273.786	0/1:320:150,170:150:5372:170:6012:-444.86,0,-387.282	0/1:75:27,48:27:972:48:1716:-132.122,0,-65.2207	1/1:120:0,120:0:0:120:4286:-385.901,-36.1236,0	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:206:109,97:109:3900:97:3439:-247.69,0,-289.182	1/1:85:0,85:0:0:85:3041:-273.804,-25.5876,0	1/1:261:0,261:0:0:261:9276:-834.806,-78.5688,0	0/1:168:85,83:85:3030:83:2956:-215.702,0,-222.357	1/1:180:0,180:0:0:180:6350:-571.566,-54.1854,0	0/1:157:79,77:79:2806:77:2759:-201.27,0,-205.499	1/1:263:5,258:5:180:258:9117:-803.942,-62.6188,0	0/1:23:8,15:8:284:15:527:-40.7488,0,-18.9797	0/1:45:25,20:25:891:20:688:-48.6903,0,-66.9624	0/1:80:43,37:43:1544:37:1328:-95.7389,0,-115.171	0/1:85:40,43:40:1432:43:1544:-113.908,0,-103.832	0/1:164:91,73:91:3252:73:2608:-185.542,0,-243.533	0/1:113:72,41:72:2553:41:1472:-98.7597,0,-196.003	1/1:267:0,267:0:0:267:9494:-854.392,-80.375,0	1/1:226:0,226:0:0:226:8063:-725.65,-68.0328,0
chr03	28686341	.	T	C	27969.6	PASS	AB=0.475055;ABP=22.5102;AC=50;AF=0.268817;AN=186;AO=1720;CIGAR=1X;DP=7379;DPB=7379;DPRA=0.897321;EPP=3737.94;EPPR=12278.3;GTI=0;LEN=1;MEANALT=1.03636;MQM=59.9802;MQMR=59.7665;NS=93;NUMALT=1;ODDS=8.70745;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61329;QR=202261;RO=5657;RPL=0;RPP=3737.94;RPPR=12269.7;RPR=1720;RUN=1;SAF=0;SAP=3737.94;SAR=1720;SRF=1;SRP=12278.3;SRR=5656;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:41,20:41:1464:20:712:-46.0438,0,-113.692	0/1:48:27,21:27:949:21:756:-53.9178,0,-71.2172	0/1:139:79,60:79:2828:60:2160:-152.824,0,-212.911	0/0:307:307,0:307:10978:0:0:0,-92.4162,-986.499	0/1:32:21,11:21:756:11:392:-25.9871,0,-58.7343	0/1:55:36,19:36:1296:19:684:-45.3337,0,-100.357	0/1:71:33,38:33:1188:38:1353:-100.695,0,-85.8531	0/1:83:27,56:27:972:56:1990:-154.385,0,-62.8124	0/1:138:80,58:80:2853:58:2061:-144.217,0,-215.405	0/1:93:49,44:49:1756:44:1561:-112.785,0,-128.965	0/1:65:31,34:31:1112:34:1200:-88.7359,0,-80.8244	0/1:96:48,48:48:1720:48:1688:-123.285,0,-126.178	0/1:74:37,37:37:1328:37:1328:-97.5457,0,-97.5409	0/0:65:65,0:65:2325:0:0:0,-19.5669,-209.507	0/1:81:37,44:37:1332:44:1576:-117.748,0,-95.799	0/1:59:25,34:25:892:34:1216:-91.9858,0,-62.8389	0/1:43:15,28:15:536:28:1004:-77.7316,0,-35.6305	0/0:30:30,0:30:1057:0:0:0,-9.0309,-95.4386	0/1:40:19,21:19:680:21:752:-55.9651,0,-49.488	0/0:51:50,1:50:1796:1:36:0,-11.7543,-158.31	0/0:161:161,0:161:5761:0:0:0,-48.4658,-518.417	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:120:73,47:73:2594:47:1658:-113.381,0,-197.582	0/1:34:22,12:22:777:12:428:-28.6238,0,-59.9591	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.02	0/1:232:106,126:106:3800:126:4494:-334.789,0,-272.299	0/0:182:182,0:182:6520:0:0:0,-54.7875,-586.104	0/1:25:8,17:8:288:17:595:-46.3509,0,-18.7417	0/0:137:137,0:137:4920:0:0:0,-41.2411,-442.459	0/1:127:65,62:65:2328:62:2210:-160.933,0,-171.549	0/0:164:164,0:164:5847:0:0:0,-49.3689,-526.225	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5341	0/1:14:8,6:8:288:6:207:-14.7525,0,-22.053	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:155:154,1:154:5528:1:36:0,-43.0614,-494.027	0/1:96:63,33:63:2230:33:1188:-78.3297,0,-172.06	0/1:47:27,20:27:968:20:720:-50.9804,0,-73.288	.:.:.:.:.:.:.:.	0/1:106:66,40:66:2364:40:1436:-97.6285,0,-181.109	0/0:33:33,0:33:1149:0:0:0,-9.93399,-103.669	0/0:52:52,0:52:1868:0:0:0,-15.6536,-167.181	0/0:53:53,0:53:1859:0:0:0,-15.9546,-167.584	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.379	0/1:67:40,27:40:1428:27:961:-66.6363,0,-108.492	0/0:140:140,0:140:4973:0:0:0,-42.1442,-447.633	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:172:172,0:172:6131:0:0:0,-51.7772,-551.887	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.259	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:89:51,38:51:1821:38:1368:-96.6292,0,-137.374	0/1:40:25,15:25:896:15:532:-36.1719,0,-68.9192	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.2778	0/0:180:180,0:180:6434:0:0:0,-54.1854,-578.247	0/1:41:22,19:22:773:19:680:-49.1869,0,-57.5022	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:12:7,5:7:252:5:171:-12.1131,0,-19.4166	0/1:69:44,25:44:1569:25:885:-59.1955,0,-120.729	0/1:87:42,45:42:1500:45:1608:-118.82,0,-109.077	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:147:147,0:147:5260:0:0:0,-44.2514,-473.505	0/0:120:119,1:119:4257:1:36:0,-32.5253,-379.707	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.342	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:130:130,0:130:4638:0:0:0,-39.1339,-417.581	0/1:131:41,90:41:1476:90:3198:-248.606,0,-93.6836	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/1:67:41,26:41:1472:26:932:-64.0299,0,-112.595	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.548	0/1:26:12,14:12:428:14:504:-37.8713,0,-31.032	0/0:108:107,1:107:3844:1:36:0,-28.913,-342.363	0/1:93:56,37:56:1997:37:1328:-91.8264,0,-151.726	0/1:131:79,51:79:2836:51:1817:-124.316,0,-215.978	0/1:113:57,56:57:2025:56:2008:-146.977,0,-148.505	0/1:73:46,26:46:1618:26:936:-62.6698,0,-124	0/0:120:120,0:120:4281:0:0:0,-36.1236,-385.433	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	0/1:79:42,37:42:1493:37:1332:-96.401,0,-110.825	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.03	0/0:129:129,0:129:4625:0:0:0,-38.8329,-416.136	0/1:51:28,23:28:1008:23:828:-59.4916,0,-75.6838	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.003	0/1:56:26,30:26:932:30:1058:-78.6719,0,-67.3412	0/0:127:125,2:125:4469:2:72:0,-31.3941,-395.384	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.5632	0/1:45:20,25:20:720:25:868:-64.8866,0,-51.5815	0/1:78:35,43:35:1260:43:1544:-115.773,0,-90.2242	0/1:57:27,30:27:972:30:1064:-78.913,0,-70.6392	0/1:112:53,59:53:1904:59:2111:-156.543,0,-137.865	0/1:53:21,32:21:756:32:1111:-84.3388,0,-52.4126	0/0:148:148,0:148:5252:0:0:0,-44.5524,-472.758	0/0:119:119,0:119:4261:0:0:0,-35.8226,-383.628
chr03	28686346	.	CAAAC	CAAAAT,CAAAT	159249	PASS	AB=0.525717,0.46941;ABP=24.2312,33.0347;AC=136,50;AF=0.731183,0.268817;AN=186;AO=5755,1739;CIGAR=1M1I3M1X,4M1X;DP=7544;DPB=8702;DPRA=0,0.86532;EPP=12335.3,3710.03;EPPR=5.18177;GTI=0;LEN=6,1;MEANALT=2.06452,2.35185;MQM=59.7571,59.9942;MQMR=60;NS=93;NUMALT=2;ODDS=11.4309;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=201705,62077;QR=35;RO=1;RPL=19,8;RPP=12335.3,3710.03;RPPR=5.18177;RPR=5736,1731;RUN=1,1;SAF=0,0;SAP=12499.8,3779.2;SAR=5755,1739;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:61:0,40,20:0:0:40,20:1401,716:-172.485,-58.492,-46.4508,-114.093,0,-108.072	1/2:48:0,27,21:0:0:27,21:954,756:-139.679,-62.0456,-53.9178,-77.9907,0,-71.6691	1/2:143:0,80,63:0:0:80,63:2791,2264:-412.048,-185.057,-160.975,-227.345,0,-208.38	1/1:310:0,307,0:0:0:307,0:10751,0:-967.201,-92.4162,0,-967.201,-92.4162,-967.201	1/2:32:0,21,10:0:0:21,10:732,360:-89.0034,-29.474,-23.1524,-59.6242,0,-56.6139	1/2:55:0,36,19:0:0:36,19:1264,680:-158.664,-55.8096,-44.9725,-103.209,0,-97.4898	1/2:74:0,35,39:0:0:35,39:1222,1396:-213.591,-114.199,-103.663,-99.7452,0,-88.0051	1/2:86:0,29,57:0:0:29,57:1036,2040:-251.179,-166.713,-157.983,-84.8233,0,-67.6646	1/2:144:1,84,58:1:35:84,58:2925,2068:-403.304,-165.767,-143.328,-235.027,0,-220.415	1/2:97:0,54,43:0:0:54,43:1887,1526:-276.999,-124.689,-108.433,-152.661,0,-139.717	1/2:66:0,33,33:0:0:33,33:1172,1176:-191.712,-96.2138,-86.2798,-95.8537,0,-85.9197	1/2:99:0,51,47:0:0:51,47:1780,1688:-282.522,-137.777,-122.424,-144.817,0,-130.669	1/2:76:0,38,38:0:0:38,38:1355,1368:-222.429,-111.982,-100.543,-110.806,0,-99.3667	1/1:66:0,66,0:0:0:66,0:2310,0:-208.162,-19.868,0,-208.162,-19.868,-208.162	1/2:82:0,37,45:0:0:37,45:1320,1616:-239.79,-132.184,-121.046,-107.964,0,-94.418	1/2:58:0,25,33:0:0:25,33:892,1188:-170.01,-97.2946,-89.7689,-73.0739,0,-63.1399	1/2:44:0,16,28:0:0:16,28:565,1004:-128.256,-82.247,-77.4305,-46.3642,0,-37.9354	1/1:31:0,31,0:0:0:31,0:1081,0:-97.5976,-9.33193,0,-97.5976,-9.33193,-97.5976	1/2:41:0,20,21:0:0:20,21:717,752:-120.164,-61.6846,-55.664,-58.8376,0,-52.5159	1/1:52:0,51,1:0:0:51,1:1803,36:-162.179,-15.3525,0,-159.242,-12.0553,-158.94	1/1:168:0,167,0:0:0:167,0:5808,0:-522.418,-50.272,0,-522.418,-50.272,-522.418	1/1:31:0,31,0:0:0:31,0:1080,0:-97.5067,-9.33193,0,-97.5067,-9.33193,-97.5067	1/2:121:0,75,46:0:0:75,46:2631,1644:-348.508,-134.401,-111.824,-214.462,0,-200.614	1/2:36:0,23,12:0:0:23,12:792,428:-99.1761,-34.8869,-27.9632,-64.2823,0,-60.6699	1/1:36:0,36,0:0:0:36,0:1266,0:-114.136,-10.8371,0,-114.136,-10.8371,-114.136	1/2:233:0,108,124:0:0:108,124:3761,4397:-664.091,-358.296,-325.785,-305.865,0,-268.537	1/1:184:0,184,0:0:0:184,0:6412,0:-576.485,-55.3895,0,-576.485,-55.3895,-576.485	1/2:25:0,8,17:0:0:8,17:286,599:-72.4422,-49.1206,-46.7123,-23.6773,0,-18.5598	1/1:140:0,139,0:0:0:139,0:4874,0:-438.241,-41.8432,0,-438.241,-41.8432,-438.241	1/2:132:0,67,64:0:0:67,64:2350,2278:-376.974,-185.735,-165.566,-191.311,0,-172.045	1/1:167:0,166,0:0:0:166,0:5758,0:-517.997,-49.971,0,-517.997,-49.971,-517.997	1/1:5:0,5,0:0:0:5,0:179,0:-16.4424,-1.50515,0,-16.4424,-1.50515,-16.4424	1/2:14:0,8,6:0:0:8,6:285,216:-41.2124,-17.9843,-15.5761,-23.5863,0,-21.7801	1/1:5:0,5,0:0:0:5,0:175,0:-16.0931,-1.50515,0,-16.0931,-1.50515,-16.0931	1/1:25:0,25,0:0:0:25,0:878,0:-79.3374,-7.52575,0,-79.3374,-7.52575,-79.3374	1/1:17:0,17,0:0:0:17,0:594,0:-53.7868,-5.11751,0,-53.7868,-5.11751,-53.7868	1/1:159:0,159,0:0:0:159,0:5583,0:-502.458,-47.8638,0,-502.458,-47.8638,-502.458	1/2:99:0,64,35:0:0:64,35:2250,1236:-284.141,-101.008,-81.7423,-183.485,0,-172.949	1/2:47:0,27,20:0:0:27,20:953,716:-136.348,-58.7471,-50.6193,-77.9568,0,-71.9362	.:.:.:.:.:.:.:.	1/2:109:0,66,42:0:0:66,42:2322,1508:-312.137,-123.119,-103.251,-189.121,0,-176.478	1/1:33:0,33,0:0:0:33,0:1159,0:-104.579,-9.93399,0,-104.579,-9.93399,-104.579	1/1:54:0,54,0:0:0:54,0:1863,0:-167.481,-16.2556,0,-167.481,-16.2556,-167.481	1/1:56:0,56,0:0:0:56,0:1950,0:-175.775,-16.8577,0,-175.775,-16.8577,-175.775	1/1:51:0,50,0:0:0:50,0:1779,0:-160.142,-15.0515,0,-160.142,-15.0515,-160.142	1/1:80:0,80,0:0:0:80,0:2787,0:-251.049,-24.0824,0,-251.049,-24.0824,-251.049	1/2:69:0,41,28:0:0:41,28:1426,993:-197.145,-81.2553,-68.9131,-116.242,0,-107.813	1/1:143:0,142,0:0:0:142,0:4942,0:-444.654,-42.7463,0,-444.654,-42.7463,-444.654	1/1:45:0,44,0:0:0:44,0:1526,0:-137.27,-13.2453,0,-137.27,-13.2453,-137.27	1/1:173:0,169,0:0:0:169,0:5971,0:-537.228,-50.8741,0,-537.228,-50.8741,-537.228	1/1:32:0,31,0:0:0:31,0:1062,0:-95.516,-9.33193,0,-95.516,-9.33193,-95.516	1/1:10:0,10,0:0:0:10,0:359,0:-32.6536,-3.0103,0,-32.6536,-3.0103,-32.6536	1/2:89:0,51,38:0:0:51,38:1795,1355:-256.931,-110.811,-95.4587,-146.474,0,-135.035	1/2:44:0,25,18:0:0:25,18:888,648:-125.327,-52.9683,-45.4425,-72.4499,0,-67.0313	1/2:18:0,9,9:0:0:9,9:307,319:-51.2304,-26.3421,-23.6328,-25.2358,0,-22.5265	1/1:182:0,181,0:0:0:181,0:6346,0:-570.843,-54.4864,0,-570.843,-54.4864,-570.843	1/2:44:0,23,21:0:0:23,21:783,741:-124.195,-60.69,-53.7663,-63.8523,0,-57.5307	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chr03	28698339	.	G	T	81535.5	PASS	AB=0.517236;ABP=20.8262;AC=53;AF=0.281915;AN=188;AO=3590;CIGAR=1X;DP=13325;DPB=13325;DPRA=1.02781;EPP=7772.56;EPPR=21092.4;GTI=1;LEN=1;MEANALT=1.12698;MQM=59.932;MQMR=59.9718;NS=94;NUMALT=1;ODDS=6.18093;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128207;QR=342208;RO=9724;RPL=2280;RPP=572.13;RPPR=1387.56;RPR=1310;RUN=1;SAF=2283;SAP=579.192;SAR=1307;SRF=6108;SRP=1389.78;SRR=3616;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:21,23:21:736:23:828:-61.5988,0,-53.3171	0/1:199:113,86:113:4013:86:3088:-218.24,0,-301.455	0/1:214:105,109:105:3733:109:3902:-286.944,0,-271.751	0/0:269:268,0:268:9357:0:0:0,-80.676,-841.752	0/1:37:16,21:16:576:21:756:-57.2291,0,-41.0369	0/1:117:47,70:47:1664:70:2499:-189.942,0,-114.827	0/1:169:86,83:86:3032:83:2954:-215.213,0,-222.237	0/1:207:79,128:79:2805:128:4600:-351.849,0,-190.376	0/1:239:100,139:100:3528:139:4952:-373.871,0,-245.788	0/1:119:57,62:57:2006:62:2212:-163.522,0,-144.987	0/1:135:55,80:55:1939:80:2853:-216.365,0,-134.144	0/1:173:76,97:76:2677:97:3471:-260.523,0,-189.097	0/1:125:60,65:60:2122:65:2319:-171.341,0,-153.619	0/0:225:225,0:225:7943:0:0:0,-67.7317,-714.904	0/1:153:85,68:85:2956:68:2427:-172.627,0,-220.217	0/1:143:73,70:73:2509:70:2489:-181.215,0,-182.695	0/1:176:74,102:74:2648:102:3640:-274.822,0,-185.585	0/0:91:91,0:91:3217:0:0:0,-27.3937,-289.754	0/1:66:33,32:33:1165:32:1140:-82.9825,0,-85.2284	0/0:223:223,0:223:7862:0:0:0,-67.1297,-707.615	0/0:276:275,1:275:9499:1:36:0,-79.486,-851.226	0/0:58:58,0:58:2050:0:0:0,-17.4597,-184.771	0/1:118:65,52:65:2293:52:1838:-130.119,0,-171.05	0/1:116:63,53:63:2233:53:1904:-135.442,0,-166.303	0/0:75:74,1:74:2614:1:36:0,-18.979,-231.91	0/1:345:180,165:180:6332:165:5898:-427.073,0,-466.123	0/0:273:272,1:272:9415:1:36:0,-78.5829,-843.738	0/1:71:32,39:32:1121:39:1388:-103.846,0,-79.8226	0/0:243:242,1:242:8428:1:36:0,-69.552,-754.936	0/1:170:102,68:102:3628:68:2440:-168.68,0,-275.552	0/0:183:183,0:183:6525:0:0:0,-55.0885,-587.335	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:334:334,0:334:11617:0:0:0,-100.544,-1045.42	0/1:147:71,76:71:2519:76:2732:-201.871,0,-182.709	0/1:128:56,72:56:1980:72:2592:-194.996,0,-139.943	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:196:95,101:95:3317:101:3588:-264.126,0,-239.745	0/0:69:67,0:67:2354:0:0:0,-20.169,-211.76	0/0:139:138,1:138:4790:1:36:0,-38.2449,-427.664	0/0:134:134,0:134:4695:0:0:0,-40.338,-422.716	0/0:110:110,0:110:3861:0:0:0,-33.1133,-347.686	0/0:164:164,0:164:5722:0:0:0,-49.3689,-515.107	0/1:125:63,62:63:2228:62:2224:-162.75,0,-163.156	0/0:214:214,0:214:7559:0:0:0,-64.4204,-680.329	0/0:97:97,0:97:3444:0:0:0,-29.1999,-310.173	0/0:234:234,0:234:8294:0:0:0,-70.441,-746.446	0/0:139:139,0:139:4884:0:0:0,-41.8432,-439.718	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:166:89,77:89:3184:77:2741:-196.961,0,-236.813	0/1:67:29,38:29:1010:38:1360:-102.532,0,-71.0405	0/1:12:6,6:6:207:6:216:-16.1782,0,-15.3545	0/0:243:243,0:243:8579:0:0:0,-73.1503,-772.111	0/1:41:15,26:15:536:26:932:-71.8485,0,-36.2326	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3584	0/1:17:10,7:10:341:7:252:-17.9114,0,-25.7924	0/1:171:103,68:103:3627:68:2412:-165.859,0,-275.161	0/1:262:143,117:143:5005:117:4166:-296.494,0,-371.973	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:176:174,1:174:6089:1:36:0,-49.4418,-544.512	0/0:251:248,3:248:8775:3:108:0,-65.4834,-778.815	0/0:142:142,0:142:5022:0:0:0,-42.7463,-452.119	0/0:137:137,0:137:4832:0:0:0,-41.2411,-435.038	0/0:225:223,2:223:7820:2:63:0,-61.7486,-697.84	0/1:204:75,129:75:2622:129:4624:-354.057,0,-174.817	0/0:93:91,2:91:3236:2:72:0,-21.1591,-284.624	0/1:90:60,30:60:2131:30:1080:-70.4206,0,-164.965	0/0:176:176,0:176:6283:0:0:0,-52.9813,-565.561	0/1:48:27,21:27:933:21:752:-53.5568,0,-69.8284	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/1:111:57,54:57:2044:54:1931:-140.652,0,-150.817	0/1:326:145,181:145:5145:181:6471:-484.338,0,-365.037	0/1:176:73,103:73:2550:103:3664:-276.984,0,-176.769	0/1:143:61,82:61:2192:82:2932:-221.067,0,-154.498	0/0:208:204,3:204:7256:3:108:0,-52.5979,-643.021	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:157:76,81:76:2685:81:2899:-213.879,0,-194.622	0/0:146:145,1:145:5156:1:36:0,-40.3521,-460.587	0/0:192:192,0:192:6806:0:0:0,-57.7978,-612.617	0/1:160:78,82:78:2751:82:2919:-214.777,0,-199.666	0/0:137:137,0:137:4790:0:0:0,-41.2411,-431.263	0/1:153:75,78:75:2635:78:2757:-202.305,0,-191.339	0/0:285:285,0:285:9970:0:0:0,-85.7935,-897.253	0/1:60:32,28:32:1132:28:995:-71.8022,0,-84.057	0/1:126:54,72:54:1916:72:2580:-194.428,0,-134.788	0/1:166:71,95:71:2532:95:3414:-257.498,0,-178.161	0/1:148:78,69:78:2760:69:2445:-175.692,0,-204.03	0/1:203:112,90:112:3981:90:3195:-226.596,0,-297.311	0/1:151:45,106:45:1537:106:3777:-294.673,0,-93.1579	0/0:149:149,0:149:5186:0:0:0,-44.8535,-466.886	0/0:183:183,0:183:6360:0:0:0,-55.0885,-572.503
chr03	28703829	.	A	C	31787.1	PASS	AB=0.497617;ABP=3.19662;AC=52;AF=0.27957;AN=186;AO=1886;CIGAR=1X;DP=7339;DPB=7339;DPRA=1.03907;EPP=4003.42;EPPR=11074.9;GTI=3;LEN=1;MEANALT=1.05455;MQM=60;MQMR=59.9967;NS=93;NUMALT=1;ODDS=0.993549;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67066;QR=190371;RO=5449;RPL=11;RPP=4003.42;RPPR=11074.9;RPR=1875;RUN=1;SAF=1886;SAP=4098.41;SAR=0;SRF=5449;SRP=11835.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:18,18:18:648:18:644:-47.4535,0,-47.8148	0/1:47:26,21:26:905:21:756:-54.2188,0,-67.6144	0/1:115:53,62:53:1858:62:2202:-163.826,0,-132.877	0/0:144:143,1:143:4922:1:36:0,-39.75,-439.537	0/1:46:29,17:29:1017:17:612:-41.5661,0,-77.9924	0/1:23:11,12:11:396:12:413:-30.5755,0,-29.0591	0/1:78:37,41:37:1285:41:1468:-108.936,0,-92.4683	0/1:113:73,40:73:2543:40:1428:-94.8011,0,-195.102	0/1:27:12,15:12:428:15:540:-40.8087,0,-30.731	0/1:69:32,37:32:1087:37:1315:-97.88,0,-77.358	0/1:74:30,44:30:1052:44:1576:-119.855,0,-72.7143	0/1:103:61,42:61:2163:42:1504:-104.648,0,-163.931	0/1:69:34,35:34:1200:35:1221:-89.4185,0,-87.5345	0/0:96:96,0:96:3407:0:0:0,-28.8989,-306.846	0/1:66:32,34:32:1140:34:1189:-87.4431,0,-83.0412	0/1:67:37,30:37:1316:30:1072:-76.6234,0,-98.5728	0/1:41:22,19:22:764:19:680:-49.1869,0,-56.7373	0/0:30:30,0:30:1056:0:0:0,-9.0309,-95.3509	0/1:47:24,23:24:825:23:828:-60.6957,0,-60.415	0/0:156:153,3:153:5288:3:108:0,-36.8855,-465.996	0/0:108:108,0:108:3812:0:0:0,-32.5112,-343.283	0/0:138:138,0:138:4724:0:0:0,-41.5421,-425.329	0/1:82:51,31:51:1763:31:1107:-75.2557,0,-134.263	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:209:108,101:108:3723:101:3573:-258.864,0,-272.356	0/0:204:203,1:203:7072:1:36:0,-57.8118,-632.951	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/0:130:130,0:130:4543:0:0:0,-39.1339,-409.043	0/1:86:47,39:47:1638:39:1392:-99.6904,0,-121.815	0/0:71:71,0:71:2451:0:0:0,-21.3731,-220.841	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07869	0/1:14:9,5:9:320:5:176:-11.9706,0,-24.9279	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:177:177,0:177:6222:0:0:0,-53.2823,-560.088	0/1:204:119,84:119:4126:84:3001:-208.941,0,-310.147	0/1:60:28,32:28:991:32:1139:-84.7572,0,-71.4417	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:100:51,49:51:1732:49:1753:-127.951,0,-126.054	0/0:42:42,0:42:1457:0:0:0,-12.6433,-131.422	0/0:67:67,0:67:2346:0:0:0,-20.169,-211.397	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/0:41:41,0:41:1401:0:0:0,-12.3422,-126.381	0/0:90:90,0:90:3094:0:0:0,-27.0927,-278.686	0/1:94:56,38:56:1965:38:1360:-94.4038,0,-148.827	0/0:112:112,0:112:3840:0:0:0,-33.7154,-345.769	0/0:67:67,0:67:2307:0:0:0,-20.169,-207.889	0/0:83:83,0:83:2852:0:0:0,-24.9855,-256.918	0/0:132:132,0:132:4650:0:0:0,-39.736,-418.667	0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1752	0/1:211:103,108:103:3616:108:3859:-283.988,0,-262.127	0/1:58:31,27:31:1069:27:963:-69.5262,0,-79.0558	.:.:.:.:.:.:.:.	0/0:145:144,0:144:5025:0:0:0,-43.3483,-452.043	0/1:17:13,4:13:460:4:133:-7.18008,0,-36.6179	0/0:8:8,0:8:265:0:0:0,-2.40824,-24.1721	0/1:10:7,3:7:252:3:104:-6.69251,0,-20.0187	0/1:73:37,36:37:1308:36:1272:-92.8077,0,-96.0463	0/1:107:60,47:60:2140:47:1675:-118.826,0,-160.658	0/1:4:2,2:2:57:2:72:-5.6326,0,-4.20919	0/0:151:151,0:151:5292:0:0:0,-45.4555,-476.421	0/0:127:125,1:125:4367:1:36:0,-34.6913,-389.612	0/0:55:55,0:55:1922:0:0:0,-16.5566,-173.253	0/0:76:76,0:76:2681:0:0:0,-22.8783,-241.535	0/0:120:120,0:120:4151:0:0:0,-36.1236,-373.775	0/1:177:54,123:54:1858:123:4386:-341.631,0,-114.214	0/0:50:50,0:50:1727:0:0:0,-15.0515,-155.709	0/1:55:36,19:36:1273:19:684:-45.3337,0,-98.3143	0/0:41:41,0:41:1429:0:0:0,-12.3422,-128.904	0/1:17:7,10:7:233:10:347:-26.4453,0,-16.1768	0/0:136:136,0:136:4789:0:0:0,-40.9401,-431.174	0/1:79:32,47:32:1144:47:1673:-127.075,0,-79.4881	0/1:102:49,53:49:1748:53:1904:-140.933,0,-126.899	0/1:154:69,85:69:2460:85:3001:-223.961,0,-175.296	0/1:134:59,75:59:2013:75:2656:-198.947,0,-141.097	0/0:86:86,0:86:3022:0:0:0,-25.8886,-272.211	0/1:7:6,1:6:208:1:36:-1.49107,0,-16.9519	0/1:103:48,55:48:1669:55:1959:-145.579,0,-119.489	0/0:85:85,0:85:2970:0:0:0,-25.5875,-267.534	0/0:141:141,0:141:4975:0:0:0,-42.4452,-447.898	0/1:41:17,24:17:581:24:833:-62.9416,0,-40.2682	0/0:71:71,0:71:2520:0:0:0,-21.3731,-227.053	0/1:41:19,22:19:676:22:758:-56.1923,0,-48.8258	0/0:105:105,0:105:3740:0:0:0,-31.6081,-336.802	0/1:21:13,8:13:453:8:288:-19.9458,0,-34.778	0/1:71:28,42:28:1000:42:1477:-111.79,0,-68.8835	0/1:75:40,35:40:1424:35:1260:-91.1282,0,-105.88	0/1:87:45,42:45:1565:42:1495:-108.653,0,-114.949	0/1:166:87,79:87:3076:79:2787:-201.099,0,-227.1	0/1:56:16,40:16:549:40:1419:-111.149,0,-32.8748	0/0:86:86,0:86:2958:0:0:0,-25.8886,-266.451	0/0:70:70,0:70:2469:0:0:0,-21.0721,-222.464
chr03	28704631	.	A	G	176629	PASS	AB=0.512508;ABP=9.80023;AC=136;AF=0.723404;AN=188;AO=8295;CIGAR=1X;DP=10747;DPB=10747;DPRA=0;EPP=17902.6;EPPR=5245.23;GTI=3;LEN=1;MEANALT=1.02128;MQM=59.9435;MQMR=59.9955;NS=94;NUMALT=1;ODDS=3.65686;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=296615;QR=87802;RO=2450;RPL=8282;RPP=17902.6;RPPR=5245.23;RPR=13;RUN=1;SAF=0;SAP=18015.4;SAR=8295;SRF=0;SRP=5323.12;SRR=2450;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:18,33:18:644:33:1188:-91.8761,0,-42.9204	0/1:196:89,107:89:3184:107:3840:-286.794,0,-227.782	0/1:155:76,79:76:2693:79:2817:-207.091,0,-195.952	1/1:278:0,278:0:0:278:9921:-892.735,-83.6863,0	0/1:89:41,48:41:1468:48:1724:-128.654,0,-105.624	0/1:69:37,32:37:1332:32:1148:-82.8588,0,-99.4113	0/1:92:39,53:39:1400:53:1904:-143.943,0,-98.6044	0/1:231:122,109:122:4327:109:3887:-280.115,0,-320.066	0/1:102:45,57:45:1586:57:2044:-153.519,0,-112.321	0/1:115:59,56:59:2120:56:1985:-144.303,0,-156.45	0/1:51:27,24:27:972:24:856:-62.0086,0,-72.4454	0/1:69:31,38:31:1116:38:1364:-102.29,0,-79.9806	0/1:82:40,42:40:1436:42:1504:-110.97,0,-104.853	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	0/1:78:32,46:32:1152:46:1641:-124.496,0,-80.5098	0/1:78:33,45:33:1188:45:1607:-121.439,0,-83.7483	0/1:65:28,37:28:1008:37:1328:-100.255,0,-71.4694	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	0/1:36:18,18:18:648:18:635:-46.6399,0,-47.8148	1/1:312:1,311:1:36:311:11131:-998.073,-90.3231,0	1/1:227:1,226:1:36:226:8104:-725.777,-64.7355,0	1/1:96:0,96:0:0:96:3441:-309.899,-28.8989,0	0/1:90:53,37:53:1885:37:1324:-92.3694,0,-142.834	0/1:168:71,97:71:2541:97:3473:-262.207,0,-178.366	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:379:197,182:197:7080:182:6490:-469.597,0,-523.166	1/1:260:0,260:0:0:260:9310:-837.853,-78.2678,0	0/1:30:12,18:12:432:18:648:-49.621,0,-30.1903	1/1:370:0,370:0:0:370:13214:-1189.06,-111.381,0	0/1:157:91,66:91:3268:66:2337:-163.324,0,-247.078	1/1:120:0,120:0:0:120:4308:-387.893,-36.1236,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:12:1,11:1:36:11:392:-32.0218,-0.0140851,0	1/1:190:0,190:0:0:190:6785:-610.723,-57.1957,0	0/1:138:57,81:57:2044:81:2872:-217.174,0,-142.69	0/1:48:27,21:27:972:21:756:-53.9178,0,-73.3485	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:219:108,111:108:3840:111:3964:-291.024,0,-279.868	1/1:41:0,41:0:0:41:1453:-131.064,-12.3422,0	1/1:163:1,162:1:36:162:5744:-513.48,-45.4696,0	1/1:96:0,96:0:0:96:3452:-310.89,-28.8989,0	1/1:62:1,61:1:36:61:2179:-192.777,-15.0656,0	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	0/1:163:85,78:85:3044:78:2770:-200.473,0,-225.122	1/1:248:0,248:0:0:248:8865:-797.835,-74.6554,0	1/1:168:2,166:2:72:166:5925:-526.365,-43.7363,0	1/1:201:1,200:1:36:200:7165:-641.305,-56.9088,0	1/1:107:0,107:0:0:107:3835:-345.345,-32.2102,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:163:71,92:71:2552:92:3300:-248.151,0,-180.862	0/1:13:3,10:3:108:10:352:-28.1048,0,-6.16178	0/1:25:12,13:12:432:13:460:-34.2096,0,-31.6954	1/1:134:0,133:0:0:133:4763:-428.615,-40.037,0	0/1:69:33,36:33:1188:36:1283:-95.0016,0,-86.4575	1/1:12:0,12:0:0:12:428:-38.8584,-3.61236,0	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/1:85:46,39:46:1652:39:1404:-101.072,0,-123.381	0/1:109:63,46:63:2268:46:1648:-115.794,0,-171.57	0/1:10:5,5:5:165:5:180:-13.5418,0,-12.1633	1/1:295:0,295:0:0:295:10522:-946.897,-88.8039,0	1/1:210:1,209:1:36:209:7467:-668.402,-59.618,0	1/1:106:1,105:1:36:105:3772:-336.051,-28.3109,0	1/1:148:1,147:1:36:147:5241:-468.227,-40.9542,0	1/1:214:3,211:3:108:211:7559:-670.265,-54.3453,0	0/1:98:68,30:68:2448:30:1068:-66.9311,0,-191.073	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:97:40,57:40:1436:57:2029:-153.594,0,-100.338	1/1:102:0,102:0:0:102:3664:-329.963,-30.7051,0	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	1/1:63:0,63:0:0:63:2234:-201.312,-18.9649,0	0/1:71:27,44:27:964:44:1565:-119.767,0,-65.7037	0/1:116:52,64:52:1872:64:2288:-171.258,0,-133.84	0/1:262:140,122:140:5036:122:4380:-315.497,0,-374.513	0/1:106:46,59:46:1652:59:2099:-157.208,0,-117.001	1/1:177:1,176:1:36:176:6312:-564.56,-49.684,0	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	0/1:155:78,77:78:2793:77:2747:-200.8,0,-204.949	1/1:174:0,174:0:0:174:6208:-558.312,-52.3792,0	1/1:272:0,272:0:0:272:9732:-875.829,-81.8802,0	0/1:79:37,42:37:1328:42:1491:-110.702,0,-96.0409	1/1:80:0,80:0:0:80:2860:-257.63,-24.0824,0	0/1:134:63,71:63:2264:71:2536:-188.153,0,-163.684	1/1:148:0,148:0:0:148:5300:-477.135,-44.5524,0	0/1:42:19,23:19:684:23:813:-60.8385,0,-49.2471	0/1:80:38,42:38:1364:42:1512:-112.292,0,-98.9783	0/1:79:40,39:40:1440:39:1392:-101.798,0,-106.116	0/1:29:5,24:5:180:24:856:-68.6312,0,-7.82219	0/1:69:33,36:33:1184:36:1292:-95.8081,0,-86.0972	0/1:73:43,30:43:1540:30:1076:-75.1777,0,-116.918	1/1:115:0,115:0:0:115:4132:-372.062,-34.6185,0	1/1:148:0,148:0:0:148:5312:-478.213,-44.5524,0
chr03	28704637	.	A	G	174796	PASS	AB=0.513001;ABP=10.2942;AC=136;AF=0.723404;AN=188;AO=8266;CIGAR=1X;DP=10695;DPB=10695;DPRA=0;EPP=17943.7;EPPR=5244.98;GTI=3;LEN=1;MEANALT=1.03191;MQM=59.9447;MQMR=60;NS=94;NUMALT=1;ODDS=3.63658;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=294907;QR=86981;RO=2426;RPL=8265;RPP=17943.7;RPPR=5244.98;RPR=1;RUN=1;SAF=0;SAP=17952.4;SAR=8266;SRF=0;SRP=5271;SRR=2426;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:17,32:17:608:32:1128:-87.0759,0,-40.3016	0/1:192:87,105:87:3124:105:3751:-279.992,0,-223.588	0/1:155:76,79:76:2732:79:2820:-207.363,0,-199.463	1/1:274:0,274:0:0:274:9741:-876.632,-82.4822,0	0/1:91:43,48:43:1544:48:1720:-127.692,0,-111.859	0/1:68:36,32:36:1292:32:1148:-83.1598,0,-96.1137	0/1:91:38,52:38:1368:52:1848:-139.144,0,-95.9683	0/1:232:123,109:123:4409:109:3872:-278.454,0,-327.141	0/1:99:44,55:44:1580:55:1967:-147.501,0,-112.69	0/1:113:58,55:58:2072:55:1955:-142.206,0,-152.734	0/1:51:27,24:27:972:24:856:-62.0086,0,-72.4454	0/1:68:31,37:31:1116:37:1317:-98.3607,0,-80.2817	0/1:78:38,40:38:1360:40:1428:-105.337,0,-99.2203	1/1:93:0,92:0:0:92:3292:-296.139,-27.6948,0	0/1:78:32,46:32:1152:46:1635:-123.957,0,-80.5098	0/1:77:33,44:33:1184:44:1580:-119.312,0,-83.689	0/1:67:29,38:29:1040:38:1351:-101.721,0,-73.7454	1/1:78:0,78:0:0:78:2795:-251.789,-23.4803,0	0/1:36:18,18:18:639:18:648:-47.8148,0,-47.0012	1/1:309:1,308:1:36:308:11035:-989.438,-89.42,0	1/1:224:1,223:1:36:223:7949:-711.75,-63.8324,0	1/1:98:0,98:0:0:98:3504:-315.568,-29.5009,0	0/1:92:53,39:53:1908:39:1392:-97.8843,0,-144.303	0/1:167:71,96:71:2535:96:3428:-258.462,0,-178.129	1/1:63:0,63:0:0:63:2248:-202.584,-18.9649,0	0/1:369:192,177:192:6891:177:6286:-454.639,0,-509.175	1/1:259:0,259:0:0:259:9236:-831.211,-77.9668,0	0/1:29:11,18:11:392:18:648:-49.922,0,-26.8902	1/1:375:0,375:0:0:375:13386:-1204.53,-112.886,0	0/1:153:88,65:88:3156:65:2324:-163.363,0,-238.207	1/1:121:0,121:0:0:121:4328:-389.69,-36.4246,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:190:0,190:0:0:190:6751:-607.665,-57.1957,0	0/1:139:58,81:58:2080:81:2908:-220.112,0,-145.627	0/1:48:27,21:27:972:21:730:-51.57,0,-73.3485	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:219:109,110:109:3903:110:3922:-287.247,0,-285.537	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	1/1:166:0,166:0:0:166:5917:-532.64,-49.971,0	1/1:96:0,96:0:0:96:3427:-308.644,-28.8989,0	1/1:62:1,61:1:36:61:2184:-193.228,-15.0656,0	1/1:88:0,88:0:0:88:3124:-281.388,-26.4906,0	0/1:160:82,78:82:2931:78:2800:-204.075,0,-215.859	1/1:253:0,253:0:0:253:9043:-813.848,-76.1606,0	1/1:173:2,171:2:72:171:6088:-540.561,-45.2415,0	1/1:201:1,200:1:36:200:7171:-641.846,-56.9088,0	1/1:106:0,106:0:0:106:3804:-342.557,-31.9092,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:162:71,91:71:2544:91:3259:-244.763,0,-180.444	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/1:25:12,13:12:428:13:460:-34.2096,0,-31.3331	1/1:132:0,132:0:0:132:4704:-423.521,-39.736,0	0/1:71:34,37:34:1212:37:1323:-97.9982,0,-88.0132	1/1:12:0,12:0:0:12:432:-39.2203,-3.61236,0	0/1:24:12,12:12:424:12:428:-31.6341,0,-31.2717	0/1:86:46,39:46:1640:39:1404:-100.712,0,-121.941	0/1:107:61,46:61:2192:46:1640:-115.676,0,-165.335	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:291:0,291:0:0:291:10319:-928.64,-87.5997,0	1/1:214:1,213:1:36:213:7602:-680.547,-60.8221,0	1/1:102:1,101:1:36:101:3611:-321.597,-27.1068,0	1/1:147:0,147:0:0:147:5202:-468.319,-44.2514,0	1/1:209:3,206:3:108:206:7339:-650.483,-52.8401,0	0/1:97:68,29:68:2431:29:1044:-65.0749,0,-189.845	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:96:40,56:40:1440:56:2001:-151.445,0,-100.999	1/1:102:0,102:0:0:102:3660:-329.603,-30.7051,0	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	1/1:66:0,66:0:0:66:2321:-209.138,-19.868,0	0/1:74:28,46:28:1004:46:1644:-125.972,0,-68.3996	0/1:118:54,64:54:1927:64:2287:-170.565,0,-138.185	0/1:261:139,122:139:4988:122:4359:-313.91,0,-370.498	0/1:106:48,58:48:1724:58:2062:-153.937,0,-123.536	1/1:179:1,178:1:36:178:6359:-568.795,-50.2861,0	0/1:20:6,14:6:216:14:495:-38.8624,0,-13.7699	0/1:153:75,78:75:2696:78:2783:-204.641,0,-196.826	1/1:172:0,172:0:0:172:6147:-553.315,-51.7772,0	1/1:267:0,267:0:0:267:9523:-857.029,-80.375,0	0/1:79:36,43:36:1288:43:1540:-115.112,0,-92.4422	1/1:81:0,81:0:0:81:2887:-260.058,-24.3834,0	0/1:136:65,71:65:2336:71:2539:-187.82,0,-169.559	1/1:145:0,145:0:0:145:5178:-466.16,-43.6494,0	0/1:41:18,23:18:644:23:800:-59.9735,0,-45.9484	0/1:78:36,42:36:1296:42:1499:-111.706,0,-93.4636	0/1:75:38,37:38:1364:37:1324:-96.8848,0,-100.483	0/1:29:5,24:5:180:24:860:-68.992,0,-7.82219	0/1:69:33,36:33:1171:36:1288:-95.4479,0,-84.9256	0/1:74:43,31:43:1544:31:1112:-78.1151,0,-116.977	1/1:114:0,114:0:0:114:4054:-365.049,-34.3174,0	1/1:147:0,147:0:0:147:5254:-472.996,-44.2514,0
chr03	28711737	.	G	A	197700	PASS	AB=0.539031;ABP=58.4396;AC=138;AF=0.734043;AN=188;AO=7694;CIGAR=1X;DP=9639;DPB=9639;DPRA=0;EPP=16710.3;EPPR=4217.84;GTI=2;LEN=1;MEANALT=1.04255;MQM=49.7159;MQMR=54.3009;NS=94;NUMALT=1;ODDS=1.88463;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272636;QR=68536;RO=1941;RPL=3232;RPP=429.995;RPPR=82.7641;RPR=4462;RUN=1;SAF=3232;SAP=429.995;SAR=4462;SRF=837;SRP=82.7641;SRR=1104;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:8,20:8:275:20:696:-50.5118,0,-16.2048	0/1:69:16,53:16:572:53:1861:-136.852,0,-30.7816	0/1:150:43,107:43:1522:107:3787:-289.085,0,-91.9149	1/1:224:0,223:0:0:223:7893:-689.078,-67.1297,0	0/1:15:7,8:7:235:8:288:-21.1093,0,-16.9625	0/1:13:4,9:4:144:9:324:-22.1329,0,-9.40023	0/1:51:19,32:19:676:32:1148:-81.9074,0,-45.1323	0/1:108:65,43:65:2303:43:1528:-98.0202,0,-173.574	0/1:79:34,45:34:1205:45:1616:-111.334,0,-83.6432	0/1:121:51,69:51:1815:69:2442:-173.098,0,-125.137	0/1:107:42,65:42:1486:65:2286:-167.631,0,-101.671	0/1:179:84,95:84:2958:95:3379:-225.965,0,-211.366	0/1:143:72,71:72:2546:71:2509:-166.541,0,-183.95	1/1:136:0,136:0:0:136:4845:-414.183,-40.9401,0	0/1:126:78,48:78:2759:48:1724:-111.268,0,-209.262	0/1:114:52,62:52:1852:62:2207:-152.637,0,-131.787	0/1:92:44,48:44:1553:48:1687:-116.286,0,-111.129	1/1:67:0,67:0:0:67:2375:-200.563,-20.169,0	0/1:61:33,28:33:1159:28:942:-63.8896,0,-85.645	1/1:197:0,197:0:0:197:6978:-605.205,-59.3029,0	1/1:248:0,248:0:0:248:8720:-750.474,-74.6554,0	1/1:61:0,61:0:0:61:2174:-194.054,-18.3628,0	0/1:84:29,55:29:1032:55:1945:-145.4,0,-67.469	0/1:53:18,35:18:640:35:1228:-93.2769,0,-39.6711	1/1:63:1,62:1:36:62:2220:-183.216,-15.3666,0	0/1:177:81,96:81:2849:96:3392:-245.277,0,-201.54	1/1:228:0,228:0:0:228:8082:-689.757,-68.6348,0	0/1:56:23,33:23:803:33:1184:-83.9069,0,-55.2015	1/1:256:0,256:0:0:256:9041:-797.279,-77.0637,0	0/1:86:36,50:36:1279:50:1751:-126.903,0,-88.7414	1/1:115:1,114:1:36:114:4002:-349.055,-31.0202,0	1/1:24:0,24:0:0:24:844:-75.3238,-7.22472,0	0/1:17:4,13:4:144:13:448:-35.4009,0,-8.19611	1/1:11:0,11:0:0:11:392:-34.7571,-3.31133,0	1/1:20:0,20:0:0:20:704:-63.6845,-6.0206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:297:0,296:0:0:296:10560:-918.682,-89.1049,0	0/1:43:14,29:14:500:29:1011:-76.615,0,-32.0388	0/1:73:44,29:44:1542:29:1020:-63.7759,0,-116.401	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:88:43,45:43:1517:45:1608:-110.64,0,-109.211	1/1:47:0,47:0:0:47:1658:-144.741,-14.1484,0	1/1:161:0,161:0:0:161:5702:-494.171,-48.4658,0	1/1:102:0,102:0:0:102:3627:-314.062,-30.7051,0	1/1:110:0,110:0:0:110:3931:-340.268,-33.1133,0	1/1:118:0,118:0:0:118:4184:-368.758,-35.5215,0	0/1:73:34,39:34:1189:39:1364:-94.9251,0,-83.5283	1/1:167:0,167:0:0:167:5875:-504.803,-50.272,0	1/1:80:0,80:0:0:80:2847:-244.687,-24.0824,0	1/1:171:0,171:0:0:171:6085:-530.983,-51.4761,0	1/1:112:0,112:0:0:112:3997:-348.974,-33.7154,0	1/1:11:0,11:0:0:11:380:-34.532,-3.31133,0	0/1:70:33,37:33:1163:37:1320:-92.7096,0,-83.1997	0/1:37:14,23:14:504:23:820:-61.7389,0,-34.5354	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.65553	1/1:140:0,140:0:0:140:4955:-434.581,-42.1442,0	0/1:23:11,12:11:378:12:428:-31.0167,0,-26.6963	1/1:15:0,15:0:0:15:536:-48.4164,-4.51545,0	0/1:14:5,9:5:176:9:320:-24.9279,0,-11.9706	0/1:81:40,41:40:1408:41:1460:-99.8957,0,-101.903	0/1:142:60,82:60:2113:82:2897:-209.146,0,-146.627	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:319:0,319:0:0:319:11348:-1004.02,-96.0286,0	1/1:187:1,186:1:36:186:6570:-567.476,-52.6943,0	1/1:87:1,86:1:36:86:3084:-253.848,-22.6162,0	1/1:57:0,57:0:0:57:2035:-179.673,-17.1587,0	1/1:169:2,167:2:72:167:5926:-514.197,-44.0518,0	0/1:100:69,31:69:2432:31:1091:-65.673,0,-188.632	1/1:66:0,66:0:0:66:2282:-191.37,-19.868,0	0/1:65:28,37:28:984:37:1320:-90.109,0,-68.5678	1/1:80:0,80:0:0:80:2844:-244.741,-24.0824,0	0/1:40:19,21:19:620:21:711:-51.6885,0,-44.0319	1/1:120:0,120:0:0:120:4278:-354.265,-36.1236,0	0/1:110:51,59:51:1808:59:2099:-144.728,0,-129.131	0/1:153:68,85:68:2408:85:3039:-211.337,0,-169.892	0/1:139:66,73:66:2334:73:2597:-187.155,0,-167.376	0/1:61:26,35:26:932:35:1239:-85.2393,0,-65.5493	1/1:133:1,132:1:36:132:4653:-389.735,-36.4784,0	0/1:41:9,32:9:299:32:1124:-89.1257,0,-14.891	0/1:57:26,31:26:916:31:1089:-79.5547,0,-64.4991	1/1:109:1,108:1:36:108:3839:-329.193,-29.2537,0	1/1:190:0,190:0:0:190:6733:-590.997,-57.1957,0	0/1:95:36,59:36:1280:59:2083:-153.148,0,-86.2718	1/1:146:1,145:1:32:145:5140:-437.695,-40.7572,0	0/1:102:53,49:53:1867:49:1742:-121.016,0,-137.104	1/1:234:3,231:3:108:231:8177:-696.122,-60.5431,0	0/1:28:9,19:9:320:19:680:-46.8558,0,-20.6126	0/1:117:60,57:60:2128:57:2031:-133.655,0,-155.064	0/1:149:72,77:72:2563:77:2707:-186.302,0,-184.259	0/1:66:29,36:29:1014:36:1284:-88.3255,0,-70.7375	0/1:152:71,81:71:2509:81:2873:-200.515,0,-179.441	0/1:138:95,43:95:3361:43:1521:-89.174,0,-259.969	1/1:153:0,153:0:0:153:5439:-473.186,-46.0576,0	1/1:210:0,210:0:0:210:7448:-645.79,-63.2163,0
chr03	28711782	.	A	G	18507.3	PASS	AB=0.46048;ABP=37.5088;AC=49;AF=0.260638;AN=188;AO=1174;CIGAR=1X;DP=5797;DPB=5797;DPRA=0.783807;EPP=2543.64;EPPR=9952.88;GTI=1;LEN=1;MEANALT=1;MQM=59.8143;MQMR=59.9329;NS=94;NUMALT=1;ODDS=4.48453;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41748;QR=165664;RO=4622;RPL=1173;RPP=2543.64;RPPR=9952.88;RPR=1;RUN=1;SAF=0;SAP=2552.32;SAR=1174;SRF=0;SRP=10039.6;SRR=4622;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:11,3:11:396:3:104:-5.485,0,-31.7683	0/1:39:30,9:30:1072:9:324:-17.7657,0,-85.0523	0/1:132:94,38:94:3355:38:1368:-83.6673,0,-262.431	0/0:136:136,0:136:4873:0:0:0,-40.9401,-438.72	0/1:15:6,9:6:216:9:316:-24.2634,0,-15.2751	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:60:26,34:26:927:34:1186:-88.9689,0,-65.6847	0/1:43:24,19:24:860:19:669:-47.5897,0,-64.7775	0/1:55:28,27:28:1008:27:964:-70.513,0,-74.4774	0/1:70:36,34:36:1280:34:1211:-88.2188,0,-94.4311	0/1:96:46,50:46:1639:50:1796:-133.023,0,-118.899	0/1:80:41,39:41:1476:39:1396:-101.857,0,-109.053	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/1:63:22,41:22:784:41:1449:-111.739,0,-51.9099	0/1:58:33,25:33:1184:25:900:-63.8436,0,-89.4086	0/1:57:29,28:29:1044:28:989:-72.1633,0,-77.1161	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:44:22,22:22:788:22:749:-54.4747,0,-57.9995	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.477	0/0:149:149,0:149:5332:0:0:0,-44.8535,-480.013	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:51:37,14:37:1332:14:479:-28.082,0,-104.83	0/1:40:32,8:32:1152:8:277:-13.2239,0,-91.9489	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:120:63,57:63:2249:57:2008:-144.811,0,-166.54	0/0:129:129,0:129:4620:0:0:0,-38.8329,-415.963	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/0:170:170,0:170:6108:0:0:0,-51.1751,-549.732	0/1:53:33,20:33:1176:20:688:-46.2824,0,-90.1916	0/0:77:76,1:76:2715:1:36:0,-19.581,-240.995	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:18:13,5:13:468:5:176:-10.7665,0,-37.0411	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:157:157,0:157:5631:0:0:0,-47.2617,-506.909	0/1:31:24,7:24:856:7:248:-13.3323,0,-68.0292	0/1:44:17,27:17:608:27:959:-73.3709,0,-41.8067	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:44:25,19:25:900:19:680:-48.2838,0,-68.0757	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.432	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.872	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.431	0/1:53:26,27:26:923:27:959:-70.0415,0,-67.4322	0/0:85:85,0:85:3045:0:0:0,-25.5875,-274.219	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:117:117,0:117:4191:0:0:0,-35.2205,-377.362	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:55:30,25:30:1072:25:896:-64.4033,0,-80.2358	0/1:30:19,11:19:684:11:396:-26.9518,0,-52.8594	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.682	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.7496	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:46:23,23:23:828:23:828:-60.9967,0,-60.9967	0/1:71:44,27:44:1584:27:968:-66.0642,0,-121.465	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:217:217,0:217:7784:0:0:0,-65.3235,-700.015	0/0:117:116,1:116:4160:1:36:0,-31.6222,-370.981	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:118:117,1:117:4168:1:36:0,-31.9233,-371.699	0/1:75:18,57:18:648:57:2036:-160.931,0,-36.0746	0/0:37:37,0:37:1332:0:0:0,-11.1381,-119.555	0/1:35:17,18:17:612:18:644:-47.7545,0,-44.8774	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:36:18,18:18:635:18:635:-46.6314,0,-46.6399	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:66:33,33:33:1184:33:1171:-85.8279,0,-86.9994	0/1:88:46,42:46:1648:42:1498:-108.623,0,-122.118	0/1:102:55,47:55:1972:47:1669:-119.79,0,-147.05	0/1:36:18,18:18:644:18:648:-47.8148,0,-47.4535	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/1:45:34,11:34:1216:11:392:-22.0737,0,-96.2002	0/1:41:27,14:27:964:14:504:-33.3559,0,-74.7346	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.837	0/0:136:136,0:136:4888:0:0:0,-40.9401,-439.443	0/1:49:33,16:33:1180:16:572:-37.063,0,-91.7576	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.55	0/1:61:28,33:28:1004:33:1184:-88.5055,0,-72.313	0/0:120:120,0:120:4316:0:0:0,-36.1236,-388.613	0/1:12:4,8:4:144:8:270:-21.0153,0,-9.62979	0/1:64:30,34:30:1076:34:1220:-90.6507,0,-77.8869	0/1:78:49,29:49:1764:29:1036:-70.0654,0,-135.563	0/1:32:17,15:17:612:15:531:-38.4889,0,-45.7805	0/1:93:44,49:44:1576:49:1760:-130.688,0,-114.136	0/1:66:21,45:21:752:45:1591:-123.605,0,-48.1383	0/0:88:87,0:87:3124:0:0:0,-26.1896,-280.947	0/0:103:103,0:103:3708:0:0:0,-31.0061,-333.918
chr03	28711811	.	C	A	24452.6	PASS	AB=0.531204;ABP=25.7769;AC=51;AF=0.271277;AN=188;AO=1437;CIGAR=1X;DP=5223;DPB=5223;DPRA=1.01913;EPP=3123.42;EPPR=8204.66;GTI=2;LEN=1;MEANALT=1.05455;MQM=59.9847;MQMR=59.9955;NS=94;NUMALT=1;ODDS=0.418299;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51414;QR=135089;RO=3781;RPL=0;RPP=3123.42;RPPR=8213.35;RPR=1437;RUN=1;SAF=1437;SAP=3123.42;SAR=0;SRF=3780;SRP=8204.66;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:13,17:13:468:17:604:-45.6597,0,-33.4287	0/1:58:34,24:34:1208:24:864:-60.6228,0,-91.5663	0/1:95:22,73:22:784:73:2597:-205.38,0,-42.2861	0/0:105:104,1:104:3700:1:36:0,-28.0099,-329.606	0/1:23:13,10:13:460:10:360:-25.8206,0,-34.8117	0/1:22:6,16:6:216:16:576:-45.5523,0,-13.1679	0/1:38:23,15:23:820:15:540:-37.4974,0,-62.6834	0/1:79:24,55:24:855:55:1972:-153.973,0,-53.4888	0/1:114:53,61:53:1896:61:2196:-163.584,0,-136.601	0/1:61:34,27:34:1224:27:968:-69.0745,0,-92.1042	0/1:33:15,18:15:536:18:648:-48.7179,0,-38.6408	0/1:101:47,54:47:1676:54:1940:-144.472,0,-120.723	0/1:95:43,52:43:1527:52:1862:-139.261,0,-109.125	0/0:70:70,0:70:2487:0:0:0,-21.0721,-224.083	0/1:59:27,32:27:959:32:1148:-85.8691,0,-68.8646	0/1:69:38,31:38:1364:31:1112:-79.6203,0,-102.29	0/1:20:12,8:12:419:8:288:-20.2468,0,-32.0221	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	0/0:88:87,0:87:3112:0:0:0,-26.1896,-279.947	0/0:105:105,0:105:3748:0:0:0,-31.6081,-337.521	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:60:37,23:37:1328:23:811:-55.245,0,-101.76	0/1:32:20,12:20:716:12:432:-29.5882,0,-55.1348	0/0:46:45,1:45:1600:1:36:0,-10.2491,-140.692	0/1:112:65,46:65:2328:46:1622:-112.53,0,-176.045	0/0:81:81,0:81:2880:0:0:0,-24.3834,-259.433	0/1:32:19,13:19:675:13:464:-32.4645,0,-51.444	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:177:177,0:177:6325:0:0:0,-53.2823,-569.341	0/1:30:18,12:18:644:12:432:-30.1903,0,-49.2597	0/1:57:25,32:25:887:32:1148:-86.4711,0,-62.9894	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:90:46,43:46:1656:43:1548:-112.462,0,-122.177	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:50:22,28:22:784:28:1008:-75.9849,0,-55.8324	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.243	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:95:39,56:39:1400:56:1982:-150.053,0,-97.7013	0/1:21:9,12:9:324:12:417:-31.5386,0,-23.1842	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:48:23,25:23:828:25:881:-65.1564,0,-60.3947	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:12:9,3:9:320:3:104:-6.09045,0,-25.53	0/1:27:11,16:11:392:16:568:-43.3241,0,-27.4922	0/1:77:39,38:39:1383:38:1360:-99.5213,0,-101.589	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:79:79,0:79:2813:0:0:0,-23.7814,-253.408	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:120:118,2:118:4232:2:72:0,-29.2869,-374.222	0/1:75:28,47:28:1000:47:1677:-128.638,0,-67.7381	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:34:24,10:24:848:10:360:-22.5093,0,-66.4046	0/0:40:40,0:40:1418:0:0:0,-12.0412,-127.916	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:72:29,43:29:1040:43:1543:-117.489,0,-72.2402	0/1:132:68,64:68:2436:64:2292:-166.805,0,-179.759	0/1:84:41,41:41:1476:41:1468:-107.372,0,-108.092	0/1:34:13,21:13:464:21:741:-56.7766,0,-31.8625	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:59:24,35:24:864:35:1260:-95.9447,0,-60.3218	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/1:43:20,23:20:712:23:828:-61.8998,0,-51.4624	0/0:69:69,0:69:2471:0:0:0,-20.7711,-222.643	0/1:58:25,33:25:881:33:1184:-89.4086,0,-62.1461	0/0:117:114,3:114:4055:3:108:0,-25.1453,-355.064	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	0/1:51:25,26:25:896:26:913:-67.1309,0,-65.6078	0/1:49:24,25:24:856:25:896:-66.2099,0,-62.6106	0/1:30:18,12:18:644:12:432:-30.1903,0,-49.2597	0/1:66:20,46:20:720:46:1656:-129.46,0,-45.2608	0/1:154:45,109:45:1612:109:3912:-305.914,0,-99.0114	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:140:140,0:140:4993:0:0:0,-42.1442,-449.518
chr03	28738952	.	G	A	28229	PASS	AB=0.505809;ABP=3.99416;AC=52;AF=0.276596;AN=188;AO=1699;CIGAR=1X;DP=6734;DPB=6734;DPRA=0.81124;EPP=3692.34;EPPR=10925.5;GTI=1;LEN=1;MEANALT=1.01887;MQM=59.5509;MQMR=59.9978;NS=94;NUMALT=1;ODDS=2.31336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60395;QR=179642;RO=5034;RPL=0;RPP=3692.34;RPPR=10934.2;RPR=1699;RUN=1;SAF=1699;SAP=3692.34;SAR=0;SRF=5033;SRP=10925.5;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:9,14:9:324:14:489:-37.4152,0,-22.5822	0/1:109:53,56:53:1908:56:2001:-147.549,0,-139.185	0/1:84:30,54:30:1080:54:1914:-147.231,0,-72.2267	0/0:154:154,0:154:5528:0:0:0,-46.3586,-497.643	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:11:8,3:8:284:3:108:-6.75446,0,-22.592	0/1:67:41,26:41:1442:26:891:-60.3139,0,-109.903	0/1:77:40,37:40:1421:37:1287:-92.9454,0,-105.006	0/1:62:27,35:27:927:35:1256:-94.6733,0,-65.0719	0/1:75:40,35:40:1436:35:1215:-87.0486,0,-106.96	0/1:68:27,41:27:957:41:1447:-110.009,0,-65.9738	0/1:61:32,29:32:1152:29:1040:-75.5352,0,-85.6273	0/1:57:32,25:32:1140:25:900:-64.1541,0,-85.7505	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:65:27,38:27:972:38:1343:-101.503,0,-68.231	0/1:72:44,28:44:1580:28:1004:-68.9759,0,-120.817	0/1:64:36,28:36:1251:28:993:-70.4084,0,-93.62	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:27:18,9:18:648:9:324:-21.3494,0,-50.5241	0/0:125:125,0:125:4443:0:0:0,-37.6287,-400.039	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/1:35:9,26:9:309:26:921:-72.6479,0,-17.6046	0/1:110:52,58:52:1827:58:2046:-151.247,0,-131.589	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:232:126,106:126:4506:106:3733:-266.249,0,-335.866	0/0:124:124,0:124:4403:0:0:0,-37.3277,-396.441	0/1:23:6,17:6:216:17:612:-48.4897,0,-12.8668	0/0:266:266,0:266:9507:0:0:0,-80.074,-855.584	0/1:74:34,40:34:1209:40:1410:-104.906,0,-86.8379	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.646	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:175:175,0:175:6239:0:0:0,-52.6802,-561.603	0/1:134:68,66:68:2436:66:2353:-171.634,0,-179.157	0/1:49:29,20:29:1029:20:705:-49.0223,0,-78.1707	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:121:52,68:52:1872:68:2410:-180.778,0,-132.423	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:75:75,0:75:2666:0:0:0,-22.5772,-240.183	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/0:44:44,0:44:1550:0:0:0,-13.2453,-139.788	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/1:68:39,29:39:1400:29:1040:-73.4361,0,-105.825	0/0:102:102,0:102:3657:0:0:0,-30.7051,-329.331	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/0:108:108,0:108:3865:0:0:0,-32.5112,-348.043	0/1:161:86,75:86:3073:75:2696:-194.383,0,-228.331	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:93:51,42:51:1821:42:1497:-107.027,0,-136.173	0/1:30:7,23:7:252:23:824:-65.4524,0,-13.9981	0/1:14:3,11:3:108:11:381:-30.2147,0,-5.86075	0/0:73:73,0:73:2586:0:0:0,-21.9752,-232.987	0/1:19:3,16:3:108:16:557:-44.7358,0,-4.3556	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:19:4,15:4:144:15:525:-41.8576,0,-7.59405	0/1:32:10,22:10:360:22:777:-60.6067,0,-23.1113	0/1:127:66,61:66:2364:61:2181:-158.275,0,-174.788	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:164:164,0:164:5832:0:0:0,-49.3689,-524.99	0/0:194:194,0:194:6933:0:0:0,-58.3998,-624.036	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.605	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:145:145,0:145:5159:0:0:0,-43.6493,-464.449	0/1:51:15,36:15:536:36:1247:-96.8894,0,-33.2223	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/1:25:7,18:7:252:18:640:-50.4003,0,-15.5032	0/0:86:86,0:86:3032:0:0:0,-25.8886,-273.106	0/1:24:7,17:7:248:17:612:-48.1887,0,-15.4395	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:49:30,19:30:1080:19:684:-47.1317,0,-82.7628	0/1:127:56,71:56:2012:71:2533:-189.751,0,-143.122	0/1:156:92,64:92:3278:64:2289:-159.295,0,-248.277	0/1:36:26,10:26:932:10:360:-21.9072,0,-73.3618	0/0:90:89,1:89:3177:1:36:0,-23.4944,-282.555	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:62:30,32:30:1080:32:1137:-83.9731,0,-78.8494	0/0:72:72,0:72:2558:0:0:0,-21.6742,-230.467	0/0:237:237,0:237:8463:0:0:0,-71.3441,-761.669	0/1:115:64,51:64:2281:51:1836:-130.861,0,-170.932	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:67:39,28:39:1400:28:1008:-70.8536,0,-106.13	0/0:129:129,0:129:4584:0:0:0,-38.8329,-412.721	0/1:38:19,19:19:684:19:684:-50.4512,0,-50.4512	0/1:69:32,37:32:1137:37:1332:-99.3774,0,-81.8659	0/1:61:37,24:37:1332:24:864:-59.7116,0,-101.82	0/1:44:27,17:27:972:17:608:-41.8024,0,-74.5526	0/1:89:41,48:41:1472:48:1720:-128.213,0,-105.984	0/1:58:16,42:16:576:42:1493:-117.189,0,-34.7152	0/0:73:73,0:73:2594:0:0:0,-21.9752,-233.706	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981
chr03	28738978	.	C	T	36941	PASS	AB=0.505914;ABP=4.01206;AC=52;AF=0.276596;AN=188;AO=1669;CIGAR=1X;DP=6642;DPB=6642;DPRA=0.803019;EPP=460.527;EPPR=4447.22;GTI=1;LEN=1;MEANALT=1;MQM=59.5315;MQMR=59.9978;NS=94;NUMALT=1;ODDS=1.63905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59520;QR=177284;RO=4969;RPL=538;RPP=460.527;RPPR=4441.65;RPR=1131;RUN=1;SAF=1669;SAP=3627.2;SAR=0;SRF=4968;SRP=10784.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	0/1:109:54,55:54:1923:55:1972:-144.943,0,-140.534	0/1:85:30,55:30:1080:55:1946:-149.811,0,-71.9257	0/0:151:151,0:151:5396:0:0:0,-45.4555,-485.772	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:10:7,3:7:239:3:93:-5.6657,0,-18.8324	0/1:65:40,25:40:1440:25:896:-61.3796,0,-110.331	0/1:74:39,35:39:1392:35:1247:-90.2579,0,-103.303	0/1:60:26,34:26:932:34:1216:-91.6766,0,-66.1371	0/1:71:38,33:38:1356:33:1178:-84.9412,0,-100.967	0/1:64:25,39:25:891:39:1400:-106.991,0,-61.2429	0/1:61:33,28:33:1180:28:993:-71.3033,0,-88.1452	0/1:54:30,24:30:1076:24:856:-61.0973,0,-80.8972	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/1:66:28,38:28:1004:38:1349:-101.804,0,-70.8079	0/1:72:44,28:44:1580:28:991:-67.7983,0,-120.817	0/1:62:35,27:35:1252:27:963:-68.3139,0,-94.3212	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/1:26:17,9:17:603:9:315:-20.8318,0,-46.7727	0/0:122:122,0:122:4356:0:0:0,-36.7257,-392.216	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:66:66,0:66:2344:0:0:0,-19.868,-211.22	0/1:35:9,26:9:316:26:936:-74.0026,0,-18.2426	0/1:105:50,55:50:1787:55:1959:-144.913,0,-129.501	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:224:120,104:120:4271:104:3703:-265.986,0,-317.139	0/0:123:123,0:123:4376:0:0:0,-37.0267,-394.014	0/1:23:6,17:6:212:17:603:-47.6758,0,-12.5011	0/0:262:261,0:261:9313:0:0:0,-78.5688,-837.928	0/1:75:35,40:35:1248:40:1423:-105.779,0,-90.0476	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:176:176,0:176:6284:0:0:0,-52.9813,-565.653	0/1:132:67,65:67:2392:65:2302:-167.688,0,-175.802	0/1:46:26,20:26:927:20:720:-51.2814,0,-69.9	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:121:52,69:52:1860:69:2472:-186.269,0,-131.255	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.593	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.657	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:66:37,29:37:1324:29:1016:-71.8807,0,-99.5923	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.927	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.39	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965	0/1:160:85,75:85:3025:75:2683:-193.514,0,-224.315	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/1:90:50,40:50:1796:40:1436:-102.445,0,-134.83	0/1:30:7,23:7:252:23:815:-64.6399,0,-13.9981	0/1:14:3,11:3:108:11:396:-31.5768,0,-5.86075	0/0:72:72,0:72:2557:0:0:0,-21.6742,-230.379	0/1:19:3,16:3:108:16:576:-46.4492,0,-4.3556	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:17:3,14:3:99:14:496:-39.8558,0,-4.11907	0/1:32:10,22:10:360:22:780:-60.8794,0,-23.1113	0/1:125:66,59:66:2355:59:2111:-152.582,0,-174.58	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:159:159,0:159:5647:0:0:0,-47.8638,-508.353	0/0:193:193,0:193:6890:0:0:0,-58.0988,-620.169	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:36:36,0:36:1271:0:0:0,-10.8371,-114.692	0/0:143:143,0:143:5100:0:0:0,-43.0473,-459.143	0/1:52:16,36:16:568:36:1288:-99.1916,0,-35.7983	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/1:22:7,15:7:244:15:536:-41.9522,0,-15.6768	0/0:83:83,0:83:2967:0:0:0,-24.9855,-267.263	0/1:24:7,17:7:248:17:612:-48.1887,0,-15.4395	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/1:49:29,20:29:1025:20:720:-50.3619,0,-77.8102	0/1:124:54,70:54:1936:70:2504:-188.036,0,-137.189	0/1:155:91,64:91:3264:64:2296:-159.601,0,-247.32	0/1:35:26,9:26:936:9:316:-18.2428,0,-74.0234	0/0:86:85,1:85:3021:1:36:0,-22.2903,-268.522	0/1:8:5,3:5:172:3:108:-7.66693,0,-13.4097	0/1:61:30,31:30:1063:31:1100:-80.9428,0,-77.618	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:239:237,0:237:8458:0:0:0,-71.3441,-760.865	0/1:115:66,49:66:2361:49:1751:-123.222,0,-178.128	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:67:39,28:39:1400:28:1000:-70.1326,0,-106.13	0/0:129:128,0:128:4581:0:0:0,-38.5318,-412.093	0/1:38:19,19:19:676:19:684:-50.4512,0,-49.7289	0/1:66:31,35:31:1104:35:1239:-91.9166,0,-79.8027	0/1:60:36,24:36:1259:24:855:-59.2002,0,-95.547	0/1:44:27,17:27:960:17:608:-41.796,0,-73.471	0/1:88:40,48:40:1422:48:1689:-125.729,0,-101.785	0/1:58:16,42:16:561:42:1512:-118.901,0,-33.3574	0/0:74:74,0:74:2632:0:0:0,-22.2762,-237.128	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.772
chr03	28743410	.	C	T	28830.6	PASS	AB=0.520947;ABP=15.5645;AC=55;AF=0.292553;AN=188;AO=1720;CIGAR=1X;DP=5781;DPB=5781;DPRA=1.02109;EPP=3737.94;EPPR=8819.19;GTI=2;LEN=1;MEANALT=1.01786;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=2.20787;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61066;QR=144928;RO=4060;RPL=0;RPP=3737.94;RPPR=8819.19;RPR=1720;RUN=1;SAF=0;SAP=3737.94;SAR=1720;SRF=0;SRP=8819.19;SRR=4060;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:8,19:8:284:19:668:-52.3179,0,-17.7755	0/1:96:43,53:43:1540:53:1887:-141.209,0,-109.994	0/1:82:44,38:44:1580:38:1352:-97.2959,0,-117.807	0/0:101:101,0:101:3594:0:0:0,-30.404,-323.665	0/1:45:19,26:19:675:26:928:-70.2919,0,-47.5306	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	0/1:58:24,34:24:856:34:1220:-92.6471,0,-59.9014	0/1:99:56,43:56:1963:43:1540:-109.091,0,-147.138	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	0/1:60:31,29:31:1112:29:1012:-73.3289,0,-82.3295	0/1:36:21,15:21:752:15:540:-38.0995,0,-57.1692	0/1:51:25,26:25:877:26:928:-68.4857,0,-63.8927	0/1:44:22,22:22:784:22:779:-57.1867,0,-57.6386	0/0:65:65,0:65:2295:0:0:0,-19.5669,-206.812	0/1:36:14,22:14:500:22:779:-59.595,0,-34.4991	0/1:37:18,19:18:639:19:654:-48.0403,0,-46.7001	0/1:64:28,36:28:999:36:1284:-96.5969,0,-70.9586	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:25:11,14:11:383:14:500:-37.8104,0,-27.2775	0/0:92:91,1:91:3263:1:36:0,-24.0965,-290.291	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/1:82:44,38:44:1576:38:1352:-97.2959,0,-117.447	0/1:140:68,72:68:2440:72:2540:-186.706,0,-177.711	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:200:101,99:101:3615:99:3498:-254.826,0,-265.349	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:25:9,16:9:324:16:576:-44.6492,0,-21.9801	0/0:116:116,0:116:4151:0:0:0,-34.9195,-373.773	0/1:168:97,71:97:3480:71:2520:-176.48,0,-262.838	0/0:160:160,0:160:5727:0:0:0,-48.1648,-515.546	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:22:6,16:6:212:16:576:-45.5523,0,-12.8021	0/0:3:3,0:3:91:0:0:0,-0.90309,-8.49185	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:148:148,0:148:5283:0:0:0,-44.5524,-475.607	0/1:131:61,70:61:2171:70:2484:-184.379,0,-156.221	0/1:46:23,23:23:819:23:824:-60.6359,0,-60.1842	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:76:31,45:31:1116:45:1592:-120.692,0,-77.8734	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:39:39,0:39:1373:0:0:0,-11.7402,-123.866	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:65:19,46:19:684:46:1618:-126.341,0,-42.3234	0/0:80:80,0:80:2863:0:0:0,-24.0824,-257.907	0/0:73:73,0:73:2606:0:0:0,-21.9752,-234.787	0/0:83:83,0:83:2948:0:0:0,-24.9855,-265.553	0/1:111:61,50:61:2184:50:1792:-128.148,0,-163.412	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:82:32,50:32:1144:50:1772:-135.079,0,-78.5851	0/1:5:3,2:3:93:2:72:-5.33157,0,-7.17158	0/1:13:7,6:7:248:6:202:-14.5962,0,-18.7508	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:66:34,32:34:1212:32:1148:-83.7619,0,-89.5183	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:16:7,9:7:243:9:320:-24.3259,0,-17.391	0/1:42:28,14:28:1008:14:504:-33.0548,0,-78.3931	0/1:247:113,134:113:4051:134:4759:-354.117,0,-290.422	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:131:131,0:131:4686:0:0:0,-39.4349,-421.9	0/0:86:84,2:84:3000:2:72:0,-19.0519,-263.395	0/0:69:69,0:69:2442:0:0:0,-20.7711,-220.032	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/1:76:18,58:18:648:58:2054:-162.253,0,-35.7736	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:56:26,30:26:936:30:1064:-79.214,0,-67.7018	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	0/0:39:39,0:39:1377:0:0:0,-11.7402,-124.227	0/1:39:19,20:19:680:20:702:-51.7629,0,-49.789	0/1:68:25,43:25:892:43:1536:-118.063,0,-60.1296	0/1:47:27,20:27:968:20:716:-50.6193,0,-73.289	0/1:82:36,46:36:1292:46:1644:-123.564,0,-91.8993	0/1:47:41,6:41:1455:6:197:-3.90292,0,-117.097	0/1:18:4,14:4:144:14:496:-39.5557,0,-7.89508	0/1:49:21,28:21:756:28:987:-74.3926,0,-53.6168	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/0:125:125,0:125:4465:0:0:0,-37.6287,-402.019	0/1:70:32,38:32:1134:38:1351:-100.817,0,-81.2951	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:62:34,28:34:1216:28:1007:-72.2825,0,-91.0827	0/0:93:93,0:93:3293:0:0:0,-27.9958,-296.588	0/1:37:22,15:22:784:15:532:-37.075,0,-59.7458	0/1:53:24,29:24:847:29:1023:-76.4271,0,-60.5941	0/1:59:32,27:32:1152:27:948:-67.872,0,-86.2294	0/1:45:21,23:21:740:23:806:-59.2917,0,-53.3566	0/1:92:51,41:51:1797:41:1459:-103.91,0,-134.315	0/1:49:13,36:13:460:36:1292:-101.833,0,-26.9849	0/0:39:39,0:39:1382:0:0:0,-11.7402,-124.677	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388
chr03	28746876	.	T	C	96575.3	PASS	AB=0.48413;ABP=9.83383;AC=131;AF=0.704301;AN=186;AO=4675;CIGAR=1X;DP=6304;DPB=6304;DPRA=23.0696;EPP=10128.6;EPPR=3516.47;GTI=5;LEN=1;MEANALT=1.03297;MQM=59.4424;MQMR=59.9699;NS=93;NUMALT=1;ODDS=0.379333;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165470;QR=58015;RO=1626;RPL=3;RPP=10128.6;RPPR=3516.47;RPR=4672;RUN=1;SAF=0;SAP=10154.6;SAR=4675;SRF=0;SRP=3533.82;SRR=1626;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:25,25:25:896:25:873:-63.8227,0,-65.9055	0/1:44:20,24:20:701:24:852:-63.737,0,-50.1664	0/1:84:35,49:35:1248:49:1727:-130.313,0,-87.3198	1/1:171:0,171:0:0:171:6031:-542.362,-51.4761,0	0/1:26:20,6:20:720:6:212:-11.598,0,-57.302	0/1:26:17,9:17:612:9:324:-21.6791,0,-47.5867	0/1:54:24,30:24:864:30:1063:-79.7206,0,-61.8269	0/1:115:61,54:61:2180:54:1909:-137.432,0,-161.847	0/1:65:35,30:35:1252:30:1059:-76.0355,0,-93.4181	0/1:43:22,21:22:788:21:726:-52.7115,0,-58.3005	0/1:39:14,25:14:500:25:884:-68.1271,0,-33.5914	0/1:126:67,59:67:2412:59:2085:-149.903,0,-179.406	0/1:84:44,40:44:1551:40:1415:-102.357,0,-114.594	1/1:56:0,56:0:0:56:1967:-177.21,-16.8577,0	0/1:75:32,43:32:1148:43:1512:-113.782,0,-81.0526	0/1:58:28,30:28:1008:30:1035:-75.9768,0,-73.5766	0/1:37:22,15:22:780:15:521:-36.078,0,-59.3849	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	0/1:26:12,14:12:432:14:504:-37.8536,0,-31.3944	1/1:64:0,64:0:0:64:2296:-206.76,-19.2659,0	1/1:117:0,117:0:0:117:4127:-371.587,-35.2205,0	1/1:72:0,71:0:0:71:2538:-228.293,-21.3731,0	0/1:90:41,49:41:1472:49:1723:-127.286,0,-105.683	0/1:35:13,22:13:460:22:783:-60.2345,0,-31.1993	1/1:54:0,54:0:0:54:1927:-173.658,-16.2556,0	0/1:208:109,98:109:3869:98:3492:-251.806,0,-285.731	1/1:98:1,97:1:36:97:3468:-308.625,-25.9027,0	0/1:36:13,23:13:464:23:828:-63.9848,0,-31.2604	1/1:156:0,156:0:0:156:5546:-499.25,-46.9607,0	0/1:106:56,50:56:2008:50:1781:-128.629,0,-149.084	1/1:109:0,109:0:0:109:3858:-347.376,-32.8123,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:1,6:1:36:6:212:-16.8173,0,-1.49106	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7901,-1.80618,0	1/1:203:0,203:0:0:203:7137:-642.1,-61.1091,0	0/1:110:70,40:70:2474:40:1432:-96.0511,0,-189.793	0/1:40:18,22:18:640:22:783:-58.7421,0,-45.8881	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:55:27,28:27:964:28:995:-73.1774,0,-70.5202	1/1:24:0,24:0:0:24:841:-76.0018,-7.22472,0	1/1:63:0,63:0:0:63:2229:-200.348,-18.9649,0	1/1:71:0,71:0:0:71:2517:-226.676,-21.3731,0	1/1:44:0,44:0:0:44:1502:-135.452,-13.2453,0	1/1:79:1,78:1:36:78:2763:-245.234,-20.1831,0	0/1:87:46,41:46:1639:41:1445:-104.095,0,-121.608	1/1:134:0,134:0:0:134:4736:-426.339,-40.338,0	1/1:52:0,52:0:0:52:1856:-167.315,-15.6536,0	1/1:109:0,109:0:0:109:3904:-351.52,-32.8123,0	0/1:20:12,8:12:428:8:280:-19.5187,0,-32.8382	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:65:34,31:34:1204:31:1112:-80.8173,0,-89.0989	0/1:28:10,18:10:360:18:646:-50.0378,0,-24.3155	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:72:1,71:1:36:71:2491:-220.816,-18.0759,0	0/1:32:16,16:16:568:16:563:-41.3653,0,-41.8189	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:7:5,2:5:165:2:72:-4.72951,0,-13.0664	0/1:48:26,22:26:919:22:788:-56.7872,0,-68.5767	0/1:118:56,62:56:2012:62:2176:-160.533,0,-145.832	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:196:1,195:1:36:195:6864:-614.144,-55.4036,0	1/1:142:1,140:1:36:140:4972:-443.963,-39.2065,0	1/1:34:0,34:0:0:34:1220:-110.089,-10.235,0	1/1:37:2,35:2:72:35:1224:-103.533,-4.30139,0	1/1:112:1,111:1:36:111:3956:-352.561,-30.1171,0	0/1:97:72,25:72:2557:25:896:-51.7477,0,-201.179	1/1:16:1,15:1:36:15:540:-45.3219,-1.21821,0	0/1:27:13,14:13:464:14:492:-36.4845,0,-33.9697	1/1:45:0,45:0:0:45:1595:-143.83,-13.5464,0	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	1/1:87:0,87:0:0:87:3073:-276.736,-26.1896,0	0/1:48:19,29:19:680:29:1027:-78.2561,0,-47.0797	0/1:106:43,63:43:1528:63:2256:-170.282,0,-105.904	0/1:81:37,44:37:1320:44:1576:-117.746,0,-94.7185	0/1:76:38,38:38:1360:38:1360:-99.8039,0,-99.8223	1/1:70:1,69:1:36:69:2467:-218.663,-17.4738,0	0/1:11:9,2:9:320:2:72:-3.46635,0,-25.831	0/1:65:26,39:26:913:39:1392:-106.004,0,-62.9171	1/1:96:1,95:1:36:95:3344:-297.406,-25.3006,0	1/1:142:0,142:0:0:142:5066:-455.863,-42.7463,0	0/1:95:42,53:42:1508:53:1879:-140.777,0,-107.417	1/1:49:0,49:0:0:49:1715:-154.546,-14.7505,0	0/1:46:18,28:18:648:28:999:-76.3643,0,-44.8045	1/1:119:1,118:1:36:118:4159:-370.846,-32.2243,0	0/1:44:25,19:25:887:19:671:-47.4705,0,-66.8852	0/1:82:52,30:52:1860:30:1055:-70.5576,0,-142.995	0/1:90:53,37:53:1896:37:1285:-88.8516,0,-143.825	0/1:37:17,20:17:612:20:701:-52.2538,0,-44.2753	0/1:95:59,36:59:2108:36:1257:-84.8277,0,-161.391	0/1:60:45,15:45:1608:15:540:-30.8655,0,-126.948	1/1:123:0,123:0:0:123:4338:-390.556,-37.0267,0	1/1:109:0,109:0:0:109:3811:-343.144,-32.8123,0
chr03	28752746	.	C	T	95321	PASS	AB=0.517229;ABP=10.1935;AC=134;AF=0.728261;AN=184;AO=4534;CIGAR=1X;DP=5885;DPB=5885;DPRA=0;EPP=9848.47;EPPR=2930.16;GTI=2;LEN=1;MEANALT=1.03261;MQM=59.991;MQMR=59.9889;NS=92;NUMALT=1;ODDS=0.0504067;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161498;QR=47607;RO=1348;RPL=4534;RPP=9848.47;RPPR=2930.16;RPR=0;RUN=1;SAF=4534;SAP=9848.47;SAR=0;SRF=1348;SRP=2930.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/1:72:30,42:30:1063:42:1495:-113.17,0,-74.3067	0/1:61:22,39:22:784:39:1387:-106.765,0,-52.5211	1/1:118:0,118:0:0:118:4223:-380.249,-35.5215,0	0/1:40:18,22:18:629:22:770:-57.5781,0,-44.8926	0/1:48:22,26:22:775:26:907:-67.4949,0,-55.5933	0/1:68:35,33:35:1237:33:1179:-85.948,0,-91.1623	0/1:63:29,34:29:1025:34:1220:-91.1419,0,-73.5958	0/1:55:24,31:24:832:31:1104:-83.1049,0,-58.6373	0/1:68:39,29:39:1367:29:1040:-73.4443,0,-102.858	0/1:28:13,15:13:440:15:540:-40.5077,0,-31.4931	0/1:72:38,34:38:1360:34:1212:-87.7122,0,-101.026	0/1:55:31,24:31:1076:24:855:-60.7135,0,-80.5888	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:52:22,30:22:771:30:1046:-78.7948,0,-54.0567	0/1:34:16,18:16:572:18:648:-48.4169,0,-41.5784	0/1:41:23,18:23:824:18:640:-45.5871,0,-62.1411	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:20:13,7:13:460:7:252:-17.0084,0,-35.7148	1/1:152:1,151:1:36:151:5392:-481.814,-42.1583,0	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	1/1:90:0,90:0:0:90:3202:-288.393,-27.0927,0	0/1:47:20,26:20:711:26:932:-69.9917,0,-50.1086	0/1:55:23,32:23:803:32:1148:-87.0732,0,-56.0317	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:214:114,100:114:4006:100:3562:-256.366,0,-296.31	1/1:160:0,160:0:0:160:5688:-512.039,-48.1648,0	0/1:21:10,11:10:360:11:387:-28.8443,0,-26.4227	1/1:201:0,201:0:0:201:7156:-644.099,-60.507,0	0/1:44:28,16:28:990:16:576:-38.9297,0,-76.1673	1/1:72:0,72:0:0:72:2554:-230.108,-21.6742,0	.:.:.:.:.:.:.:.	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:152:0,152:0:0:152:5376:-483.974,-45.7566,0	0/1:86:58,28:58:2034:28:1008:-65.1478,0,-157.441	0/1:42:16,26:16:564:26:936:-71.9162,0,-38.447	.:.:.:.:.:.:.:.	0/1:59:21,38:21:740:38:1364:-105.3,0,-49.1626	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	1/1:51:0,51:0:0:51:1806:-162.819,-15.3525,0	1/1:28:0,28:0:0:28:982:-88.681,-8.42884,0	1/1:42:0,42:0:0:42:1506:-135.835,-12.6433,0	0/1:49:16,33:16:560:33:1184:-92.1178,0,-35.9783	1/1:122:0,122:0:0:122:4329:-389.786,-36.7257,0	1/1:78:1,77:1:36:77:2753:-244.412,-19.8821,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:143:62,80:62:2212:80:2868:-215.251,0,-156.239	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:103:47,56:47:1659:56:1982:-147.647,0,-118.591	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:100:0,100:0:0:100:3571:-321.598,-30.103,0	0/1:30:17,13:17:600:13:464:-33.0666,0,-45.2983	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:38:15,23:15:536:23:800:-60.8766,0,-37.1357	0/1:79:35,44:35:1256:44:1563:-117.18,0,-89.5639	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	1/1:176:1,175:1:36:175:6227:-556.931,-49.383,0	1/1:127:1,126:1:36:126:4496:-401.212,-34.6325,0	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	1/1:60:0,60:0:0:60:2136:-192.506,-18.0618,0	1/1:115:0,115:0:0:115:4118:-370.804,-34.6185,0	0/1:100:75,25:75:2654:25:891:-50.4058,0,-209.004	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:74:27,47:27:954:47:1675:-128.76,0,-63.8977	1/1:75:0,75:0:0:75:2644:-238.204,-22.5773,0	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	1/1:32:0,32:0:0:32:1128:-101.826,-9.63296,0	0/1:43:19,24:19:676:24:864:-65.1383,0,-48.2237	0/1:45:18,27:18:644:27:963:-73.4396,0,-44.7442	0/1:144:62,82:62:2186:82:2927:-220.316,0,-153.657	0/1:59:10,49:10:351:49:1730:-138.223,0,-14.1659	1/1:70:0,70:0:0:70:2476:-223.092,-21.0721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:77:42,35:42:1476:35:1260:-90.5262,0,-109.952	1/1:101:0,101:0:0:101:3575:-321.96,-30.404,0	1/1:139:0,139:0:0:139:4954:-446.011,-41.8432,0	0/1:85:42,42:42:1476:42:1495:-109.198,0,-107.486	1/1:43:0,43:0:0:43:1516:-136.73,-12.9443,0	0/1:72:41,31:41:1451:31:1112:-78.7172,0,-109.211	1/1:120:2,118:2:72:118:4186:-370.077,-29.2869,0	0/1:33:15,18:15:527:18:639:-47.9043,0,-37.8262	0/1:68:33,35:33:1161:35:1256:-92.8752,0,-84.3247	0/1:48:22,26:22:775:26:918:-68.4858,0,-55.6217	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:38:18,20:18:635:20:710:-52.7867,0,-46.0378	0/1:39:30,9:30:1071:9:320:-17.4022,0,-84.9614	1/1:134:0,134:0:0:134:4765:-429.009,-40.338,0	1/1:77:0,77:0:0:77:2747:-247.472,-23.1793,0
chr03	28752873	.	T	C	36073.5	PASS	AB=0.513848;ABP=9.86658;AC=52;AF=0.27957;AN=186;AO=2127;CIGAR=1X;DP=7828;DPB=7828;DPRA=1.11118;EPP=4621.73;EPPR=12376.1;GTI=0;LEN=1;MEANALT=1.05172;MQM=59.9158;MQMR=59.9893;NS=93;NUMALT=1;ODDS=0.310633;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76188;QR=204142;RO=5698;RPL=2127;RPP=4621.73;RPPR=12376.1;RPR=0;RUN=1;SAF=0;SAP=4621.73;SAR=2127;SRF=0;SRP=12376.1;SRR=5698;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:30,16:30:1064:16:576:-38.3276,0,-82.2243	0/1:155:68,87:68:2440:87:3120:-234.367,0,-173.195	0/1:87:34,53:34:1220:53:1899:-144.988,0,-83.9172	0/0:143:142,1:142:5089:1:36:0,-39.449,-454.553	0/1:50:22,28:22:792:28:1004:-75.6244,0,-56.5542	0/1:42:18,24:18:644:24:864:-65.4393,0,-45.6473	0/1:134:84,50:84:2997:50:1788:-120.86,0,-229.622	0/1:102:39,63:39:1404:63:2252:-172.237,0,-95.9542	0/1:76:34,42:34:1220:42:1496:-112.053,0,-87.2285	0/1:92:28,64:28:1008:64:2272:-177.021,0,-63.3416	0/1:58:24,34:24:856:34:1212:-91.9266,0,-59.9014	0/1:80:36,44:36:1296:44:1580:-118.408,0,-92.8615	0/1:73:43,30:43:1544:30:1080:-75.5381,0,-117.278	0/0:93:93,0:93:3321:0:0:0,-27.9958,-299.107	0/1:43:28,15:28:1008:15:527:-34.8159,0,-78.0921	0/1:58:31,27:31:1116:27:968:-69.9776,0,-83.292	0/1:73:43,30:43:1540:30:1076:-75.1777,0,-116.918	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:34:14,20:14:504:20:700:-53.0858,0,-35.4631	0/0:124:124,0:124:4456:0:0:0,-37.3277,-401.209	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:81:26,55:26:913:55:1976:-153.731,0,-58.1006	0/1:100:55,45:55:1972:45:1611:-115.177,0,-147.652	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:344:154,190:154:5501:190:6812:-509.432,0,-391.662	0/0:200:200,0:200:7169:0:0:0,-60.206,-645.249	0/1:35:16,19:16:568:19:676:-50.6319,0,-40.9158	0/0:253:249,4:249:8906:4:144:0,-62.847,-788.207	0/1:129:68,61:68:2429:61:2188:-158.353,0,-180.031	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.234	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:176:176,0:176:6316:0:0:0,-52.9813,-568.53	0/1:220:129,91:129:4640:91:3260:-227.394,0,-351.534	0/1:53:28,25:28:1008:25:896:-65.0058,0,-75.0818	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:111:53,58:53:1904:58:2072:-153.336,0,-138.223	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.19	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.083	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:79:29,49:29:1040:49:1756:-134.353,0,-70.0741	0/0:138:138,0:138:4933:0:0:0,-41.5421,-444.119	0/0:104:102,1:102:3656:1:36:0,-27.7676,-325.645	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/1:113:49,64:49:1737:64:2287:-172.075,0,-122.596	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:145:60,85:60:2136:85:3041:-230.269,0,-148.859	0/1:46:15,31:15:540:31:1112:-86.544,0,-35.0892	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/0:107:107,0:107:3818:0:0:0,-32.2102,-343.814	0/1:31:20,11:20:712:11:396:-26.6508,0,-55.0747	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:76:36,40:36:1284:40:1440:-107.019,0,-92.9851	0/1:123:59,64:59:2124:64:2287:-169.064,0,-154.4	.:.:.:.:.:.:.:.	0/0:183:183,0:183:6540:0:0:0,-55.0885,-588.683	0/0:229:226,3:226:8104:3:108:0,-58.8607,-719.3	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:133:131,2:131:4678:2:72:0,-33.2003,-414.342	0/1:125:37,88:37:1324:88:3152:-246.119,0,-81.8333	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:95:94,1:94:3380:1:36:0,-24.9996,-300.816	0/1:45:22,23:22:788:23:820:-60.5762,0,-57.6984	0/1:169:96,73:96:3413:73:2616:-184.812,0,-256.51	0/1:118:66,51:66:2368:51:1828:-129.221,0,-177.798	0/1:70:58,12:58:2084:12:432:-18.1491,0,-166.758	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:73:35,38:35:1256:38:1368:-101.446,0,-91.3701	0/0:112:112,0:112:4009:0:0:0,-33.7154,-360.997	0/0:158:158,0:158:5645:0:0:0,-47.5627,-508.17	0/1:91:39,52:39:1400:52:1872:-141.365,0,-98.9055	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:85:49,36:49:1760:36:1296:-91.3548,0,-133.096	0/0:140:140,0:140:5024:0:0:0,-42.1442,-452.305	0/1:38:16,22:16:572:22:788:-59.8057,0,-40.3743	0/1:70:38,32:38:1368:32:1148:-82.5577,0,-102.349	0/1:66:33,33:33:1180:33:1188:-87.3606,0,-86.6401	0/1:46:19,27:19:684:27:964:-73.2279,0,-48.0429	0/1:89:50,39:50:1800:39:1400:-99.506,0,-135.491	0/1:69:29,40:29:1040:40:1440:-109.108,0,-73.1433	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.668	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432
chr03	28803405	.	G	A	145530	PASS	AB=0.476371;ABP=22.2001;AC=130;AF=0.714286;AN=182;AO=5447;CIGAR=1X;DP=7523;DPB=7523;DPRA=83.5778;EPP=11831;EPPR=4502.31;GTI=1;LEN=1;MEANALT=1;MQM=59.8963;MQMR=59.9933;NS=91;NUMALT=1;ODDS=3.20386;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193941;QR=73588;RO=2076;RPL=2816;RPP=16.6543;RPPR=3.4287;RPR=2631;RUN=1;SAF=2816;SAP=16.6543;SAR=2631;SRF=1029;SRP=3.3492;SRR=1047;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:18,9:18:635:9:320:-21.0145,0,-49.3492	0/1:55:25,30:25:869:30:1080:-80.9566,0,-61.967	0/1:73:40,33:40:1386:33:1163:-82.2217,0,-103.057	1/1:142:0,142:0:0:142:5087:-457.902,-42.7463,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:27:17,10:17:603:10:360:-24.6165,0,-46.4717	0/1:55:23,32:23:811:32:1144:-86.7129,0,-56.7533	0/1:77:45,32:45:1604:32:1129:-78.7372,0,-121.471	0/1:81:45,36:45:1598:36:1268:-89.9064,0,-119.725	0/1:132:65,67:65:2323:67:2408:-177.24,0,-169.594	0/1:71:32,39:32:1129:39:1376:-102.762,0,-80.5432	0/1:157:73,84:73:2565:84:2972:-220.442,0,-183.836	0/1:184:96,88:96:3424:88:3131:-226.627,0,-252.985	1/1:113:0,113:0:0:113:3988:-359.111,-34.0164,0	0/1:141:68,73:68:2400:73:2613:-192.942,0,-173.81	0/1:125:62,63:62:2201:63:2245:-164.684,0,-160.689	0/1:74:36,38:36:1288:38:1364:-100.784,0,-93.9474	1/1:76:0,76:0:0:76:2712:-244.324,-22.8783,0	0/1:62:36,26:36:1275:26:928:-65.1744,0,-96.3884	1/1:58:0,58:0:0:58:2056:-185.309,-17.4597,0	1/1:129:1,128:1:36:128:4541:-405.068,-35.2346,0	1/1:9:0,9:0:0:9:309:-28.1407,-2.70927,0	0/1:75:47,28:47:1688:28:1008:-68.4591,0,-129.63	0/1:32:14,18:14:504:18:648:-49.0189,0,-36.0651	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	0/1:225:123,102:123:4371:102:3633:-259.384,0,-325.832	1/1:138:1,137:1:36:137:4872:-435.036,-37.9439,0	0/1:79:45,34:45:1570:34:1201:-84.6123,0,-117.805	1/1:112:0,112:0:0:112:3983:-358.631,-33.7154,0	0/1:78:40,38:40:1432:38:1355:-98.77,0,-105.697	1/1:103:0,103:0:0:103:3700:-333.201,-31.0061,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:13:0,13:0:0:13:464:-42.0929,-3.91339,0	1/1:300:0,300:0:0:300:10641:-957.603,-90.309,0	0/1:43:25,18:25:896:18:648:-45.7076,0,-68.0161	0/1:59:32,27:32:1117:27:964:-69.3161,0,-83.0746	0/1:2:1,1:1:36:1:27:-2.09772,0,-2.99621	0/1:120:63,57:63:2268:57:2027:-146.577,0,-168.258	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:48:0,48:0:0:48:1724:-155.417,-14.4494,0	1/1:118:0,118:0:0:118:4217:-379.707,-35.5215,0	1/1:108:0,108:0:0:108:3844:-346.156,-32.5112,0	1/1:48:0,48:0:0:48:1693:-152.585,-14.4494,0	0/1:41:12,29:12:432:29:1044:-81.9326,0,-26.879	1/1:74:0,74:0:0:74:2624:-236.406,-22.2762,0	1/1:70:0,70:0:0:70:2507:-225.692,-21.0721,0	1/1:122:0,122:0:0:122:4316:-388.616,-36.7257,0	0/1:50:32,18:32:1121:18:640:-42.8778,0,-86.1442	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:61:34,27:34:1208:27:957:-68.0819,0,-90.6633	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	.:.:.:.:.:.:.:.	1/1:74:0,74:0:0:74:2622:-236.198,-22.2762,0	0/1:18:6,12:6:216:12:424:-33.0779,0,-14.372	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:62:28,34:28:983:34:1207:-90.2714,0,-70.1187	0/1:101:53,48:53:1878:48:1707:-123.511,0,-138.893	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:165:0,165:0:0:165:5894:-530.568,-49.67,0	1/1:77:1,76:1:36:76:2706:-240.18,-19.581,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:35:0,35:0:0:35:1241:-111.994,-10.5361,0	1/1:94:0,94:0:0:94:3333:-300.182,-28.2968,0	0/1:120:78,42:78:2781:42:1499:-99.0802,0,-214.406	1/1:51:0,51:0:0:51:1810:-163.178,-15.3525,0	0/1:68:30,38:30:1067:38:1364:-101.856,0,-75.8712	1/1:63:0,63:0:0:63:2240:-201.861,-18.9649,0	0/1:28:13,15:13:459:15:540:-40.5077,0,-33.2152	1/1:74:0,74:0:0:74:2630:-236.841,-22.2762,0	0/1:197:92,105:92:3277:105:3742:-277.642,0,-235.846	0/1:119:56,63:56:2008:63:2224:-164.53,0,-145.171	0/1:127:65,62:65:2315:62:2220:-161.834,0,-170.379	0/1:23:9,14:9:320:14:485:-37.0417,0,-22.2187	1/1:152:0,152:0:0:152:5431:-488.87,-45.7566,0	0/1:7:3,4:3:108:4:129:-9.82045,0,-7.96796	0/1:61:34,27:34:1195:27:968:-69.0745,0,-89.4917	1/1:51:0,51:0:0:51:1821:-164.169,-15.3525,0	1/1:128:0,128:0:0:128:4585:-412.814,-38.5318,0	0/1:119:54,65:54:1927:65:2327:-173.862,0,-137.884	1/1:116:0,116:0:0:116:4136:-372.407,-34.9195,0	0/1:97:47,50:47:1624:50:1749:-128.488,0,-117.243	1/1:220:0,220:0:0:220:7837:-705.36,-66.2266,0	0/1:43:19,24:19:672:24:864:-65.1383,0,-47.8625	0/1:109:65,44:65:2285:44:1580:-109.671,0,-173.099	0/1:116:67,49:67:2336:49:1752:-123.044,0,-175.577	0/1:71:31,40:31:1099:40:1412:-106.001,0,-77.8463	0/1:98:59,39:59:2083:39:1378:-94.7962,0,-158.239	0/1:128:95,33:95:3373:33:1176:-67.6159,0,-265.254	1/1:147:0,147:0:0:147:5215:-469.486,-44.2514,0	1/1:214:0,214:0:0:214:7647:-688.262,-64.4204,0
chr03	28805793	.	TCGA	TCGG	161674	PASS	AB=0.488099;ABP=10.3495;AC=135;AF=0.718085;AN=188;AO=7804;CIGAR=3M1X;DP=10890;DPB=10890.5;DPRA=0;EPP=16949.2;EPPR=6602.11;GTI=0;LEN=1;MEANALT=1.45745;MQM=59.9906;MQMR=59.9773;NS=94;NUMALT=1;ODDS=2.0536;PAIRED=0;PAIREDR=0;PAO=2;PQA=72;PQR=0;PRO=0;QA=278898;QR=107207;RO=3039;RPL=0;RPP=16949.2;RPPR=6602.11;RPR=7804;RUN=1;SAF=7804;SAP=16949.2;SAR=0;SRF=3039;SRP=6602.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:27,16:27:943:16:568:-38.5074,0,-72.238	0/1:198:96,101:96:3346:101:3608:-265.333,0,-241.767	0/1:196:102,94:102:3604:94:3368:-244.316,0,-265.567	1/1:178:0,177:0:0:177:6339:-570.221,-53.2823,0	0/1:63:42,20:42:1499:20:716:-45.7441,0,-116.181	0/1:30:12,18:12:425:18:644:-49.2597,0,-29.556	0/1:181:98,81:98:3434:81:2896:-206.632,0,-255.031	0/1:257:130,126:130:4561:126:4520:-329.543,0,-333.237	0/1:81:41,36:41:1431:36:1280:-91.9938,0,-105.574	0/1:97:44,53:44:1543:53:1892:-141.358,0,-109.96	0/1:130:62,68:62:2183:68:2418:-178.741,0,-157.601	0/1:84:43,41:43:1516:41:1468:-107.13,0,-111.445	0/1:93:41,51:41:1454:51:1813:-135.415,0,-103.121	1/1:124:0,124:0:0:124:4426:-398.512,-37.3277,0	0/1:86:47,39:47:1673:39:1400:-100.411,0,-124.969	0/1:68:38,30:38:1340:30:1076:-76.6828,0,-100.429	0/1:108:55,53:55:1914:53:1883:-137.237,0,-140.022	1/1:86:0,85:0:0:85:3040:-273.549,-25.5876,0	0/1:67:30,37:30:1076:37:1324:-99.2931,0,-76.984	1/1:229:1,228:1:36:228:8164:-731.176,-65.3376,0	1/1:118:0,118:0:0:118:4221:-379.706,-35.5215,0	1/1:134:0,134:0:0:134:4788:-431.078,-40.338,0	0/1:32:20,11:20:708:11:392:-26.0476,0,-54.4775	0/1:147:67,79:67:2375:79:2806:-208.469,0,-169.699	1/1:89:0,89:0:0:89:3171:-285.616,-26.7917,0	0/1:355:171,184:171:6069:184:6526:-480.559,0,-439.453	1/1:230:0,227:0:0:227:8125:-730.871,-68.3338,0	0/1:46:22,24:22:789:24:849:-62.8804,0,-57.4877	1/1:264:3,260:3:107:260:9284:-825.553,-69.5328,0	0/1:114:56,58:56:1980:58:2084:-153.513,0,-144.156	1/1:97:0,97:0:0:97:3468:-312.332,-29.1999,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:41:23,17:23:803:17:608:-42.6511,0,-60.1879	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:20:0,20:0:0:20:704:-63.6845,-6.0206,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:246:0,244:0:0:244:8711:-783.679,-73.4513,0	0/1:243:136,104:136:4785:104:3728:-263.165,0,-358.257	0/1:104:45,59:45:1587:59:2101:-158.051,0,-111.813	0/1:10:2,7:2:72:7:248:-19.6657,0,-3.82086	0/1:214:115,99:115:4071:99:3552:-255.467,0,-302.158	1/1:60:1,59:1:30:59:2102:-186.527,-15.1407,0	1/1:169:0,169:0:0:169:6025:-542.356,-50.8741,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:69:0,69:0:0:69:2455:-221.205,-20.7711,0	0/1:235:120,114:120:4194:114:4084:-296.945,0,-306.842	1/1:192:0,192:0:0:192:6823:-614.142,-57.7978,0	1/1:124:0,123:0:0:123:4400:-395.922,-37.0267,0	1/1:161:0,160:0:0:160:5728:-515.406,-48.1648,0	0/1:194:89,104:89:3131:104:3707:-275.523,0,-223.708	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:308:146,161:146:5168:161:5741:-424.051,0,-372.509	0/1:58:20,38:20:717:38:1368:-105.961,0,-47.3985	0/1:26:7,19:7:251:19:684:-54.0635,0,-15.1111	1/1:196:3,193:3:108:193:6904:-611.35,-48.9267,0	0/1:45:20,24:20:711:24:860:-64.1646,0,-50.759	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:101:51,49:51:1801:49:1760:-128.28,0,-131.967	0/1:131:57,74:57:2047:74:2626:-197.152,0,-145.067	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:199:0,196:0:0:196:7021:-631.679,-59.0019,0	1/1:203:2,201:2:60:201:7197:-642.085,-55.4108,0	1/1:110:0,110:0:0:110:3940:-354.792,-33.1133,0	1/1:147:0,147:0:0:147:5263:-473.806,-44.2514,0	1/1:145:0,144:0:0:144:5143:-462.731,-43.3483,0	0/1:149:101,48:101:3565:48:1713:-109.6,0,-276.206	1/1:48:0,47:0:0:47:1675:-150.677,-14.1484,0	0/1:90:50,40:50:1794:40:1440:-102.805,0,-134.65	1/1:113:0,113:0:0:113:4029:-362.798,-34.0164,0	0/1:27:17,10:17:605:10:356:-24.2534,0,-46.6533	1/1:101:0,101:0:0:101:3622:-326.185,-30.404,0	0/1:49:26,23:26:921:23:824:-59.7328,0,-68.4563	0/1:155:87,67:87:3036:67:2385:-168.19,0,-226.753	0/1:186:81,104:81:2873:104:3724:-279.311,0,-202.759	0/1:165:86,78:86:3012:78:2784:-201.073,0,-221.583	1/1:160:0,160:0:0:160:5732:-515.996,-48.1648,0	0/1:18:7,11:7:250:11:392:-30.2015,0,-17.4282	0/1:161:90,70:90:3171:70:2484:-175.287,0,-237.092	1/1:134:0,134:0:0:134:4799:-432.065,-40.338,0	1/1:196:0,193:0:0:193:6889:-619.755,-58.0988,0	0/1:121:56,65:56:1976:65:2328:-173.355,0,-141.686	1/1:68:0,67:0:0:67:2400:-215.897,-20.169,0	0/1:97:55,41:55:1945:41:1463:-102.765,0,-146.126	1/1:160:2,158:2:72:158:5660:-502.683,-41.3281,0	0/1:38:19,19:19:661:19:680:-50.09,0,-48.3735	0/1:78:36,41:36:1278:41:1468:-108.877,0,-91.7827	0/1:96:49,47:49:1736:47:1688:-122.948,0,-127.265	0/1:101:60,41:60:2134:41:1464:-101.652,0,-161.925	0/1:160:77,83:77:2695:83:2963:-218.738,0,-194.14	0/1:68:48,20:48:1689:20:712:-43.9366,0,-131.825	1/1:73:1,72:1:36:72:2568:-227.771,-18.3769,0	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0
chr03	28805797	.	ACAT	TCAT	50346	PASS	AB=0.496658;ABP=3.59091;AC=53;AF=0.281915;AN=188;AO=2983;CIGAR=1X3M;DP=11042;DPB=11042;DPRA=0.993971;EPP=6480.51;EPPR=17396.5;GTI=0;LEN=1;MEANALT=1.45763;MQM=59.9987;MQMR=59.9889;NS=94;NUMALT=1;ODDS=0.96769;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106841;QR=282476;RO=8010;RPL=0;RPP=6480.51;RPPR=17396.5;RPR=2983;RUN=1;SAF=2983;SAP=6480.51;SAR=0;SRF=8010;SRP=17396.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:16,26:16:557:26:917:-70.2013,0,-37.8131	0/1:196:101,94:101:3567:94:3357:-243.395,0,-262.289	0/1:198:95,102:95:3346:102:3668:-270.659,0,-241.689	0/0:181:180,0:180:6377:0:0:0,-54.1854,-573.759	0/1:63:21,41:21:748:41:1472:-113.752,0,-48.6215	0/1:31:19,12:19:652:12:432:-29.8893,0,-49.666	0/1:186:87,97:87:3069:97:3467:-256.491,0,-220.69	0/1:258:130,128:130:4573:128:4592:-335.778,0,-334.076	0/1:83:41,42:41:1450:42:1495:-109.858,0,-105.81	0/1:97:54,43:54:1913:43:1529:-108.701,0,-143.248	0/1:134:68,63:68:2403:63:2247:-162.727,0,-176.761	0/1:83:41,42:41:1450:42:1504:-110.669,0,-105.81	0/1:95:55,40:55:1935:40:1440:-101.3,0,-145.827	0/0:127:126,0:126:4463:0:0:0,-37.9298,-401.482	0/1:86:38,47:38:1357:47:1688:-126.26,0,-96.4834	0/1:70:32,37:32:1131:37:1328:-98.7983,0,-81.0736	0/1:106:52,54:52:1829:54:1935:-142.517,0,-132.979	0/0:89:89,0:89:3130:0:0:0,-26.7917,-281.926	0/1:68:36,31:36:1277:31:1116:-80.2229,0,-94.7038	0/0:232:232,0:232:8174:0:0:0,-69.839,-735.689	0/0:123:121,0:121:4242:0:0:0,-36.4246,-381.679	0/0:134:133,0:133:4687:0:0:0,-40.037,-421.635	0/1:32:11,20:11:390:20:703:-53.9774,0,-25.8208	0/1:147:79,67:79:2803:67:2404:-172.395,0,-208.288	0/0:92:92,0:92:3232:0:0:0,-27.6948,-291.105	0/1:357:188,169:188:6585:169:6076:-439.471,0,-485.276	0/0:231:231,0:231:8130:0:0:0,-69.5379,-731.709	0/1:46:24,22:24:863:22:792:-57.7583,0,-64.1451	0/0:268:264,3:264:9292:3:108:0,-70.6597,-826.19	0/1:114:58,54:58:2015:54:1925:-139.484,0,-147.58	0/0:98:98,0:98:3445:0:0:0,-29.5009,-310.265	0/0:19:19,0:19:683:0:0:0,-5.71957,-61.8001	0/1:41:17,24:17:611:24:860:-65.3796,0,-42.9809	0/0:2:2,0:2:66:0:0:0,-0.60206,-6.26795	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0445	0/0:14:13,1:13:460:1:36:0,-0.616145,-38.1368	0/0:257:256,0:256:9023:0:0:0,-77.0637,-811.74	0/1:242:106,136:106:3712:136:4863:-364.973,0,-261.438	0/1:105:61,44:61:2159:44:1580:-110.883,0,-162.967	0/1:10:7,3:7:251:3:100:-6.31956,0,-19.9276	0/1:216:103,112:103:3640:112:4024:-297.286,0,-262.746	0/0:61:61,0:61:2165:0:0:0,-18.3628,-194.889	0/0:172:172,0:172:6053:0:0:0,-51.7772,-544.885	0/0:69:69,0:69:2447:0:0:0,-20.7711,-220.484	0/0:66:66,0:66:2302:0:0:0,-19.868,-207.439	0/0:71:71,0:71:2494:0:0:0,-21.3731,-224.714	0/1:233:119,113:119:4201:113:4045:-294.126,0,-308.165	0/0:200:200,0:200:7061:0:0:0,-60.206,-635.561	0/0:131:131,0:131:4595:0:0:0,-39.4349,-413.72	0/0:163:163,0:163:5762:0:0:0,-49.0679,-518.701	0/1:194:105,86:105:3706:86:3092:-220.65,0,-275.887	0/0:15:15,0:15:514:0:0:0,-4.51545,-46.5832	0/1:310:165,144:165:5829:144:5155:-370.84,0,-431.48	0/1:59:39,20:39:1371:20:720:-47.368,0,-105.927	0/1:27:20,7:20:699:7:248:-14.5364,0,-55.1045	0/0:201:198,3:198:7003:3:108:0,-50.4319,-620.266	0/1:45:24,21:24:851:21:751:-54.3696,0,-63.3636	0/0:15:15,0:15:526:0:0:0,-4.51545,-47.6702	0/1:13:9,4:9:323:4:144:-9.40023,0,-25.5017	0/1:101:50,51:50:1772:51:1822:-133.857,0,-129.358	0/1:133:77,56:77:2699:56:2016:-141.676,0,-203.118	0/1:8:6,2:6:211:2:72:-4.42848,0,-16.9252	0/0:208:208,0:208:7376:0:0:0,-62.6142,-663.895	0/0:206:205,1:205:7230:1:36:0,-58.4139,-647.165	0/0:114:114,0:114:3983:0:0:0,-34.3174,-358.663	0/0:150:150,0:150:5306:0:0:0,-45.1545,-477.681	0/0:151:149,0:149:5222:0:0:0,-44.8535,-469.83	0/1:149:49,93:49:1737:93:3295:-253.66,0,-113.508	0/0:48:48,0:48:1699:0:0:0,-14.4494,-153.195	0/1:90:40,50:40:1420:50:1792:-134.47,0,-101.004	0/0:116:116,0:116:4121:0:0:0,-34.9195,-371.076	0/1:28:11,17:11:382:17:612:-46.9846,0,-26.2836	0/0:101:100,0:100:3529:0:0:0,-30.103,-317.522	0/1:52:26,23:26:916:23:828:-59.7368,0,-67.6494	0/1:156:66,87:66:2333:87:3120:-234.631,0,-163.835	0/1:186:106,80:106:3753:80:2868:-202.365,0,-281.981	0/1:164:81,82:81:2848:82:2913:-213.086,0,-207.239	0/0:171:170,0:170:5969:0:0:0,-51.1751,-536.967	0/1:18:11,7:11:372:7:252:-17.6104,0,-28.387	0/1:161:70,91:70:2418:91:3257:-244.882,0,-169.407	0/0:136:136,0:136:4746:0:0:0,-40.9401,-427.307	0/0:198:198,0:198:7052:0:0:0,-59.6039,-634.746	0/1:119:65,54:65:2297:54:1944:-139.413,0,-171.169	0/0:71:71,0:71:2526:0:0:0,-21.3731,-227.593	0/1:95:41,54:41:1451:54:1930:-145.379,0,-102.287	0/0:164:161,2:161:5727:2:72:0,-42.591,-508.714	0/1:38:19,19:19:663:19:684:-50.4512,0,-48.5541	0/1:77:42,34:42:1495:34:1224:-87.3357,0,-111.714	0/1:97:50,47:50:1774:47:1688:-123.007,0,-130.741	0/1:99:41,58:41:1459:58:2084:-158.028,0,-101.804	0/1:159:84,75:84:2964:75:2683:-193.851,0,-219.042	0/1:67:20,47:20:717:47:1692:-132.398,0,-44.6892	0/0:78:77,1:77:2682:1:36:0,-19.8821,-238.029	0/0:95:94,0:94:3327:0:0:0,-28.2968,-299.289
chr03	28812762	.	TT	CT	26108.5	PASS	AB=0.478157;ABP=16.8604;AC=55;AF=0.295699;AN=186;AO=1609;CIGAR=1X1M;DP=6469;DPB=6469;DPRA=0.860636;EPP=3496.91;EPPR=10526;GTI=4;LEN=1;MEANALT=1.05263;MQM=59.6998;MQMR=59.9934;NS=93;NUMALT=1;ODDS=0.45649;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57188;QR=168628;RO=4850;RPL=0;RPP=3496.91;RPPR=10517.3;RPR=1609;RUN=1;SAF=0;SAP=3496.91;SAR=1609;SRF=1;SRP=10526;SRR=4849;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:31,22:31:1082:22:788:-55.282,0,-81.7322	0/1:123:62,61:62:2059:61:2167:-158.262,0,-148.543	0/1:128:64,64:64:2206:64:2262:-165.254,0,-160.269	0/0:153:153,0:153:5350:0:0:0,-46.0576,-481.637	0/1:29:16,13:16:562:13:468:-33.7264,0,-42.1792	0/1:56:28,28:28:963:28:1008:-74.1787,0,-70.1207	0/1:110:43,67:43:1509:67:2384:-181.697,0,-102.987	0/1:74:44,30:44:1492:30:1076:-74.8685,0,-112.287	0/1:75:29,46:29:973:46:1628:-124.142,0,-65.2933	0/1:95:53,42:53:1855:42:1499:-106.606,0,-138.63	0/1:25:15,10:15:525:10:341:-23.492,0,-40.0534	0/1:48:26,22:26:903:22:779:-55.9826,0,-67.133	0/1:61:36,25:36:1269:25:891:-62.1378,0,-96.1508	0/0:30:29,0:29:999:0:0:0,-8.72987,-89.8572	0/1:52:20,32:20:712:32:1140:-87.2533,0,-48.7535	0/1:40:25,15:25:850:15:536:-36.5336,0,-64.7659	0/1:38:24,14:24:854:14:500:-33.8888,0,-65.7421	0/0:48:48,0:48:1688:0:0:0,-14.4494,-152.205	0/1:20:12,8:12:398:8:288:-20.2468,0,-30.1176	0/0:111:110,1:110:3739:1:32:0,-30.215,-333.51	0/0:92:92,0:92:3238:0:0:0,-27.6948,-291.641	0/0:87:87,0:87:3057:0:0:0,-26.1896,-275.359	0/1:65:33,32:33:1140:32:1134:-82.798,0,-83.334	0/1:120:72,48:72:2497:48:1692:-116.416,0,-188.769	0/0:46:46,0:46:1600:0:0:0,-13.8474,-144.285	0/1:238:125,113:125:4404:113:4013:-289.705,0,-324.89	0/0:181:181,0:181:6222:0:0:0,-54.4864,-560.088	0/1:34:18,16:18:633:16:572:-41.5784,0,-47.0611	0/0:192:192,0:192:6650:0:0:0,-57.7978,-598.59	0/1:67:31,32:31:1078:32:1148:-84.3111,0,-78.0089	0/0:62:62,0:62:2135:0:0:0,-18.6639,-192.414	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9288	0/1:10:7,3:7:250:3:108:-7.06011,0,-19.8364	0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891	0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1292	.:.:.:.:.:.:.:.	0/0:149:148,0:148:5206:0:0:0,-44.5524,-468.323	0/1:131:79,52:79:2718:52:1840:-126.429,0,-205.425	0/1:70:33,37:33:1156:37:1302:-96.3954,0,-83.2725	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:78:41,37:41:1419:37:1312:-94.8945,0,-104.52	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1531	0/0:72:72,0:72:2511:0:0:0,-21.6742,-226.239	0/0:78:77,1:77:2680:1:36:0,-19.8821,-237.846	0/0:55:55,0:55:1937:0:0:0,-16.5566,-174.604	0/0:91:91,0:91:3166:0:0:0,-27.3937,-285.164	0/1:86:52,34:52:1800:34:1223:-84.482,0,-136.388	0/0:102:102,0:102:3530:0:0:0,-30.7051,-317.909	0/0:75:75,0:75:2609:0:0:0,-22.5772,-235.057	0/0:69:69,0:69:2415:0:0:0,-20.7711,-217.605	0/1:215:116,97:116:4014:97:3463:-247.338,0,-297.05	0/0:2:2,0:2:61:0:0:0,-0.60206,-5.79323	0/1:75:39,36:39:1363:36:1288:-93.6463,0,-100.388	0/1:30:20,10:20:703:10:356:-23.3503,0,-54.5624	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:58:58,0:58:2056:0:0:0,-17.4597,-185.311	0/1:25:14,11:14:471:11:388:-27.7279,0,-35.1831	0/0:8:8,0:8:259:0:0:0,-2.40824,-23.6247	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:35:17,18:17:597:18:640:-47.384,0,-43.5212	0/1:79:45,34:45:1531:34:1215:-85.872,0,-114.296	0/1:6:1,5:1:34:5:180:-14.7435,0,-1.59273	0/0:141:141,0:141:4868:0:0:0,-42.4452,-438.276	0/0:173:173,0:173:6040:0:0:0,-52.0782,-543.712	0/0:46:44,0:44:1505:0:0:0,-13.2453,-135.398	0/0:58:57,1:57:1973:1:36:0,-13.8615,-174.242	0/0:117:117,0:117:4129:0:0:0,-35.2205,-371.794	0/1:69:20,49:20:703:49:1747:-136.468,0,-42.8224	0/0:4:4,0:4:131:0:0:0,-1.20412,-12.1132	0/1:44:30,14:30:1041:14:496:-31.7289,0,-80.751	0/0:58:58,0:58:2012:0:0:0,-17.4597,-181.349	1/1:6:0,6:0:0:6:216:-19.7881,-1.80618,0	0/0:104:104,0:104:3608:0:0:0,-31.3071,-324.927	0/1:66:25,41:25:872:41:1447:-110.63,0,-58.9264	0/1:84:45,39:45:1567:39:1356:-96.9618,0,-116.03	0/1:104:60,44:60:2096:44:1567:-110.01,0,-157.6	0/1:52:31,21:31:1054:21:732:-50.5405,0,-79.5081	0/0:69:69,0:69:2401:0:0:0,-20.7711,-216.344	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:76:41,35:41:1404:35:1233:-88.3926,0,-103.771	0/0:60:60,0:60:2074:0:0:0,-18.0618,-186.926	0/0:138:138,0:138:4841:0:0:0,-41.5421,-435.846	0/1:72:32,40:32:1139:40:1423:-106.69,0,-81.1451	0/0:50:50,0:50:1725:0:0:0,-15.0515,-155.529	0/1:83:44,39:44:1566:39:1368:-98.4279,0,-116.246	0/0:135:134,1:134:4640:1:36:0,-37.0408,-414.17	0/1:38:17,21:17:590:21:752:-56.5589,0,-41.9842	0/1:62:38,24:38:1362:24:864:-59.4105,0,-104.217	0/1:41:20,21:20:681:21:743:-54.8511,0,-49.2626	0/1:17:12,5:12:427:5:180:-11.4299,0,-33.6506	0/1:42:13,29:13:446:29:1036:-80.9045,0,-27.8223	0/1:78:26,52:26:917:52:1863:-144.464,0,-59.3655	0/0:62:62,0:62:2171:0:0:0,-18.6639,-195.655	0/0:105:105,0:105:3668:0:0:0,-31.6081,-330.327
chr03	28812785	.	A	G	27154.9	PASS	AB=0.486909;ABP=7.9564;AC=55;AF=0.295699;AN=186;AO=1634;CIGAR=1X;DP=6389;DPB=6389;DPRA=0.899644;EPP=3516.54;EPPR=10217.9;GTI=5;LEN=1;MEANALT=1;MQM=59.7032;MQMR=59.9933;NS=93;NUMALT=1;ODDS=0.623556;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58406;QR=169707;RO=4752;RPL=4;RPP=3516.54;RPPR=10217.9;RPR=1630;RUN=1;SAF=0;SAP=3551.2;SAR=1634;SRF=0;SRP=10321.8;SRR=4752;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:30,22:30:1080:22:769:-53.8669,0,-81.8597	0/1:123:60,63:60:2126:63:2247:-165.442,0,-154.578	0/1:127:63,64:63:2210:64:2300:-168.969,0,-160.929	0/0:145:145,0:145:5182:0:0:0,-43.6493,-466.517	0/1:30:16,14:16:576:14:504:-36.6638,0,-43.1441	0/1:56:28,28:28:1008:28:1000:-73.4577,0,-74.1787	0/1:108:42,66:42:1493:66:2354:-179.602,0,-102.151	0/1:74:44,30:44:1569:30:1071:-74.4172,0,-119.223	0/1:75:29,46:29:1036:46:1640:-125.225,0,-70.9767	0/1:96:53,43:53:1904:43:1540:-109.994,0,-142.739	0/1:24:14,10:14:500:10:356:-25.1565,0,-38.1115	0/1:48:26,22:26:928:22:792:-57.1562,0,-69.3888	0/1:58:33,25:33:1184:25:868:-60.9722,0,-89.4086	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:51:19,32:19:684:32:1148:-88.275,0,-46.5378	0/1:36:21,15:21:756:15:540:-38.0995,0,-57.5301	0/1:40:25,15:25:896:15:540:-36.8871,0,-68.9192	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/1:21:12,9:12:432:9:309:-21.8191,0,-32.8996	0/0:109:107,2:107:3799:2:72:0,-25.9755,-335.268	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:66:33,33:33:1165:33:1176:-86.2798,0,-85.287	0/1:117:71,46:71:2525:46:1656:-114.063,0,-192.223	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/1:239:124,115:124:4387:115:4108:-297.949,0,-323.057	0/0:179:179,0:179:6413:0:0:0,-53.8844,-577.255	0/1:35:17,18:17:603:18:644:-47.7499,0,-44.0635	0/0:190:189,0:189:6742:0:0:0,-56.8947,-606.64	0/1:67:31,36:31:1104:36:1292:-96.356,0,-79.5016	0/0:60:59,1:59:2112:1:36:0,-14.4635,-186.751	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:7,3:7:252:3:108:-7.06011,0,-20.0187	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	.:.:.:.:.:.:.:.	0/0:147:147,0:147:5271:0:0:0,-44.2514,-474.524	0/1:131:78,53:78:2792:53:1904:-132.189,0,-212.085	0/1:69:32,37:32:1133:37:1328:-99.0339,0,-81.5056	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:78:39,39:39:1366:39:1400:-102.801,0,-99.7541	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.337	0/0:78:78,0:78:2795:0:0:0,-23.4803,-251.789	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:88:87,0:87:3094:0:0:0,-26.1896,-278.325	0/1:84:50,34:50:1785:34:1205:-83.4671,0,-135.644	0/0:99:99,0:99:3545:0:0:0,-29.802,-319.257	0/0:74:74,0:74:2626:0:0:0,-22.2762,-236.585	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.275	0/1:211:113,98:113:4052:98:3502:-251.853,0,-301.349	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:78:39,39:39:1396:39:1400:-102.817,0,-102.459	0/1:29:19,10:19:665:10:360:-24.0144,0,-51.4428	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.128	0/1:24:13,11:13:468:11:392:-28.3916,0,-35.2349	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/1:35:17,18:17:612:18:644:-47.7453,0,-44.8774	0/1:78:44,34:44:1584:34:1224:-86.9844,0,-119.371	0/1:6:1,5:1:36:5:179:-14.6523,0,-1.79209	0/0:139:139,0:139:4988:0:0:0,-41.8432,-449.067	0/0:173:173,0:173:6178:0:0:0,-52.0782,-556.116	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/0:58:55,3:55:1961:3:108:0,-7.38457,-166.688	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/1:68:20,48:20:720:48:1724:-134.971,0,-44.6587	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:43:29,14:29:1029:14:504:-32.7538,0,-79.9769	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	1/1:6:0,6:0:0:6:208:-19.0581,-1.80618,0	0/0:102:101,0:101:3590:0:0:0,-30.404,-323.094	0/1:64:24,40:24:864:40:1436:-110.242,0,-58.8166	0/1:85:46,39:46:1637:39:1382:-99.0897,0,-122.029	0/1:104:59,45:59:2109:45:1596:-112.618,0,-158.77	0/1:52:30,22:30:1057:22:784:-55.2304,0,-79.7854	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:76:40,36:40:1421:36:1285:-93.0723,0,-105.307	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.579	0/0:136:134,2:134:4804:2:72:0,-34.1034,-425.678	0/1:71:32,39:32:1148:39:1396:-104.564,0,-82.2567	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:83:43,40:43:1529:40:1436:-104.55,0,-112.916	0/0:131:130,1:130:4614:1:36:0,-35.8367,-411.823	0/1:41:19,22:19:680:22:792:-59.2553,0,-49.1869	0/1:60:36,24:36:1296:24:862:-59.8353,0,-98.8821	0/1:41:20,21:20:716:21:756:-56.025,0,-52.4255	0/1:17:12,5:12:432:5:180:-11.4299,0,-34.1037	0/1:42:13,29:13:468:29:1025:-79.9113,0,-29.8164	0/1:77:26,51:26:932:51:1824:-141.257,0,-61.0196	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:100:100,0:100:3600:0:0:0,-30.103,-324.205
chr03	28812930	.	T	G	151392	PASS	AB=0.521628;ABP=20.5755;AC=136;AF=0.723404;AN=188;AO=7199;CIGAR=1X;DP=9277;DPB=9277;DPRA=0;EPP=15367.3;EPPR=4319.75;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.9436;MQMR=59.9682;NS=94;NUMALT=1;ODDS=4.85804;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=254111;QR=74223;RO=2075;RPL=7168;RPP=15367.3;RPPR=4319.75;RPR=31;RUN=1;SAF=0;SAP=15635.4;SAR=7199;SRF=0;SRP=4508.82;SRR=2075;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:29,51:29:1044:51:1809:-139,0,-70.1924	0/1:71:45,26:45:1620:26:923:-62.0113,0,-124.717	0/1:257:130,127:130:4642:127:4521:-329.694,0,-340.575	1/1:313:0,313:0:0:313:10948:-985.221,-94.2224,0	0/1:35:19,16:19:684:16:555:-39.74,0,-51.3543	0/1:34:13,21:13:464:21:744:-57.0493,0,-31.8625	0/1:128:67,61:67:2385:61:2139:-154.244,0,-176.374	0/1:202:86,116:86:3065:116:4101:-308.47,0,-215.27	0/1:83:40,43:40:1417:43:1508:-111.025,0,-102.84	0/1:97:41,56:41:1464:56:2012:-152.153,0,-102.856	0/1:31:15,16:15:540:16:560:-41.3968,0,-39.6046	0/1:88:49,39:49:1760:39:1375:-97.5554,0,-132.193	0/1:59:25,34:25:900:34:1224:-92.7063,0,-63.5602	1/1:39:0,39:0:0:39:1362:-122.877,-11.7402,0	0/1:70:34,36:34:1224:36:1280:-94.4311,0,-89.3949	0/1:58:26,32:26:936:32:1148:-86.1701,0,-67.0997	0/1:24:11,13:11:392:13:445:-33.1471,0,-28.3953	1/1:31:0,31:0:0:31:1100:-99.3097,-9.33193,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:262:0,262:0:0:262:9305:-837.424,-78.8699,0	1/1:159:0,159:0:0:159:5425:-488.402,-47.8638,0	1/1:149:0,149:0:0:149:5280:-475.34,-44.8535,0	0/1:164:65,99:65:2317:99:3439:-260.359,0,-159.42	0/1:46:15,31:15:540:31:1091:-84.6514,0,-35.0892	1/1:79:0,79:0:0:79:2815:-253.59,-23.7814,0	0/1:227:109,118:109:3908:118:4150:-305.353,0,-283.579	1/1:189:1,188:1:36:188:6676:-597.323,-53.2964,0	0/1:28:15,13:15:540:13:464:-33.6687,0,-40.5077	1/1:347:1,346:1:21:346:12267:-1101.44,-102.358,0	0/1:155:78,77:78:2804:77:2689:-195.594,0,-205.939	1/1:162:0,162:0:0:162:5683:-511.597,-48.7669,0	1/1:11:0,11:0:0:11:382:-34.7125,-3.31133,0	0/1:10:4,6:4:129:6:216:-16.7802,0,-8.91736	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:145:0,145:0:0:145:5129:-461.751,-43.6494,0	0/1:143:50,92:50:1773:92:3224:-247.429,0,-116.892	0/1:29:13,16:13:468:16:568:-42.722,0,-33.7298	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:177:83,94:83:2972:94:3353:-248.696,0,-214.43	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:173:0,173:0:0:173:6137:-552.432,-52.0782,0	1/1:36:0,36:0:0:36:1268:-114.423,-10.8371,0	1/1:55:0,55:0:0:55:1952:-175.956,-16.5567,0	1/1:96:0,96:0:0:96:3349:-301.628,-28.8989,0	0/1:133:47,86:47:1677:86:3061:-235.682,0,-111.178	1/1:226:0,226:0:0:226:8037:-723.294,-68.0328,0	1/1:103:0,103:0:0:103:3672:-330.685,-31.0061,0	1/1:130:0,130:0:0:130:4618:-415.784,-39.1339,0	0/1:135:73,62:73:2605:62:2190:-156.724,0,-194.057	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:139:64,75:64:2285:75:2666:-198.342,0,-164.067	0/1:84:42,42:42:1480:42:1469:-107.216,0,-108.134	0/1:9:4,5:4:140:5:171:-13.0162,0,-10.2353	1/1:168:1,167:1:36:167:5918:-529.126,-46.9748,0	0/1:89:39,50:39:1400:50:1775:-133.241,0,-99.4708	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:91:41,50:41:1453:50:1755:-130.836,0,-103.669	0/1:51:27,24:27:972:24:847:-61.197,0,-72.4454	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:211:0,211:0:0:211:7435:-669.204,-63.5173,0	1/1:195:0,195:0:0:195:6860:-617.477,-58.7009,0	1/1:52:0,52:0:0:52:1831:-165.069,-15.6536,0	1/1:104:0,104:0:0:104:3643:-328.079,-31.3071,0	1/1:333:2,331:2:72:331:11713:-1047.17,-93.4063,0	0/1:156:103,53:103:3685:53:1882:-122.697,0,-284.89	1/1:15:0,15:0:0:15:523:-47.3985,-4.51545,0	0/1:67:32,35:32:1144:35:1248:-92.4559,0,-83.1005	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	1/1:159:0,159:0:0:159:5628:-505.283,-47.8638,0	0/1:118:41,77:41:1476:77:2725:-209.956,0,-97.6146	0/1:166:82,84:82:2936:84:2958:-216.485,0,-214.503	0/1:175:97,78:97:3480:78:2791:-198.75,0,-260.731	0/1:92:31,61:31:1112:61:2176:-168.408,0,-72.6966	1/1:129:2,126:2:72:126:4492:-397.612,-32.0549,0	0/1:17:11,6:11:396:6:207:-13.8494,0,-30.8652	0/1:122:58,64:58:2069:64:2261:-167.027,0,-149.753	1/1:215:0,215:0:0:215:7580:-682.238,-64.7215,0	1/1:233:1,232:1:36:232:8231:-737.195,-66.5417,0	0/1:41:27,14:27:972:14:487:-31.817,0,-75.4557	1/1:58:0,58:0:0:58:2066:-186.21,-17.4597,0	0/1:45:27,18:27:972:18:593:-40.1357,0,-74.2516	1/1:87:0,86:0:0:86:2856:-256.947,-25.8886,0	0/1:16:6,10:6:216:10:329:-25.1119,0,-14.974	0/1:65:35,30:35:1260:30:1054:-75.6022,0,-94.1385	0/1:42:19,23:19:684:23:815:-61.0275,0,-49.2471	0/1:24:8,16:8:288:16:564:-43.8656,0,-19.038	0/1:56:32,24:32:1140:24:830:-58.1578,0,-86.0515	0/1:62:44,18:44:1584:18:631:-38.4525,0,-124.188	1/1:104:0,104:0:0:104:3671:-330.594,-31.3071,0	1/1:90:0,90:0:0:90:3216:-289.663,-27.0927,0
chr03	28818382	.	A	G	191538	PASS	AB=0.512;ABP=10.2022;AC=134;AF=0.712766;AN=188;AO=9071;CIGAR=1X;DP=11884;DPB=11884;DPRA=0;EPP=19700.4;EPPR=6102.68;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.9804;MQMR=59.9836;NS=94;NUMALT=1;ODDS=2.70142;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=324131;QR=100641;RO=2809;RPL=9071;RPP=19700.4;RPPR=6102.68;RPR=0;RUN=1;SAF=0;SAP=19700.4;SAR=9071;SRF=0;SRP=6102.68;SRR=2809;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:30,27:30:1072:27:943:-68.0245,0,-79.6337	0/1:276:112,164:112:4020:164:5867:-445.048,0,-278.903	0/1:194:105,89:105:3745:89:3169:-227.034,0,-278.85	1/1:242:1,241:1:36:241:8624:-772.553,-69.251,0	0/1:79:41,38:41:1468:38:1349:-97.9223,0,-108.635	0/1:51:30,21:30:1068:21:748:-52.2928,0,-81.0795	0/1:228:113,115:113:4026:115:4116:-301.99,0,-293.892	0/1:212:95,117:95:3404:117:4174:-312.021,0,-242.734	0/1:93:47,46:47:1669:46:1635:-119.442,0,-122.5	0/1:149:87,62:87:3128:62:2219:-155.12,0,-236.892	0/1:71:30,41:30:1080:41:1468:-111.043,0,-76.1401	0/1:75:43,32:43:1544:32:1144:-80.6923,0,-116.676	0/1:77:26,51:26:936:51:1828:-141.622,0,-61.3802	1/1:104:0,104:0:0:104:3733:-336.169,-31.3071,0	0/1:95:47,48:47:1692:48:1724:-126.848,0,-123.969	0/1:45:18,27:18:644:27:968:-73.891,0,-44.7442	0/1:75:29,45:29:1040:45:1607:-122.429,0,-71.4232	1/1:64:0,64:0:0:64:2253:-203.02,-19.2659,0	0/1:55:22,33:22:788:33:1180:-89.9514,0,-54.6881	1/1:366:0,366:0:0:366:13079:-1176.92,-110.177,0	1/1:175:0,175:0:0:175:6244:-562.058,-52.6803,0	1/1:132:0,132:0:0:132:4736:-426.397,-39.736,0	0/1:86:42,44:42:1512:44:1562:-114.982,0,-110.486	0/1:180:85,95:85:3037:95:3396:-251.67,0,-219.373	1/1:93:0,93:0:0:93:3320:-299.019,-27.9958,0	0/1:382:209,173:209:7479:173:6177:-441.035,0,-558.05	1/1:371:0,371:0:0:371:13242:-1191.51,-111.682,0	0/1:36:21,15:21:748:15:536:-37.7377,0,-56.8082	1/1:328:0,328:0:0:328:11724:-1055.01,-98.7378,0	0/1:146:76,70:76:2732:70:2504:-181.662,0,-202.172	1/1:166:0,166:0:0:166:5936:-534.349,-49.971,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:22:0,22:0:0:22:772:-69.8001,-6.62266,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:194:0,194:0:0:194:6923:-623.136,-58.3998,0	0/1:166:91,75:91:3268:75:2664:-190.036,0,-244.369	0/1:90:39,51:39:1404:51:1828:-137.708,0,-99.5666	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:187:87,100:87:3112:100:3576:-265.755,0,-224.015	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:210:0,210:0:0:210:7470:-672.346,-63.2163,0	1/1:67:0,66:0:0:66:2372:-213.378,-19.868,0	1/1:69:0,69:0:0:69:2459:-221.562,-20.7711,0	1/1:74:0,74:0:0:74:2650:-238.746,-22.2762,0	0/1:169:87,82:87:3128:82:2920:-212.162,0,-230.871	1/1:319:0,319:0:0:319:11410:-1026.77,-96.0286,0	1/1:214:0,214:0:0:214:7637:-687.368,-64.4204,0	1/1:228:0,228:0:0:228:8134:-732.075,-68.6348,0	0/1:209:100,109:100:3565:109:3879:-286.391,0,-258.142	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:223:92,131:92:3304:131:4664:-351.936,0,-230.448	0/1:42:26,16:26:917:16:568:-38.8086,0,-70.2013	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:198:0,197:0:0:197:7027:-632.26,-59.3029,0	0/1:49:23,26:23:824:26:936:-69.809,0,-59.7328	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:34:20,14:20:720:14:504:-35.4631,0,-54.8938	0/1:84:29,55:29:1036:55:1976:-152.828,0,-68.2674	0/1:100:53,47:53:1900:47:1680:-121.383,0,-141.175	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:177:0,176:0:0:176:6287:-565.706,-52.9813,0	1/1:265:1,264:1:36:264:9448:-846.68,-76.1747,0	1/1:104:0,104:0:0:104:3727:-335.63,-31.3071,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:315:1,314:1:36:314:11185:-1002.94,-91.2262,0	0/1:119:67,52:67:2396:52:1868:-132.577,0,-180.075	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:127:69,58:69:2480:58:2080:-149.239,0,-185.222	1/1:111:0,111:0:0:111:3960:-356.589,-33.4143,0	0/1:28:9,19:9:324:19:676:-52.7392,0,-21.077	1/1:159:0,159:0:0:159:5691:-512.308,-47.8638,0	0/1:109:52,57:52:1872:57:2048:-151.779,0,-135.947	0/1:216:101,115:101:3595:115:4112:-305.243,0,-258.735	0/1:216:92,124:92:3296:124:4456:-336.186,0,-231.837	0/1:153:83,70:83:2984:70:2508:-179.915,0,-222.734	1/1:119:0,119:0:0:119:4256:-383.219,-35.8226,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:107:62,45:62:2224:45:1608:-112.8,0,-168.214	1/1:195:0,195:0:0:195:6965:-626.915,-58.7009,0	1/1:398:0,398:0:0:398:14235:-1280.91,-119.81,0	0/1:128:60,68:60:2160:68:2440:-181.323,0,-156.135	1/1:82:0,82:0:0:82:2952:-265.913,-24.6845,0	0/1:112:47,65:47:1688:65:2323:-175.614,0,-118.492	1/1:145:1,144:1:36:144:5168:-461.661,-40.0511,0	0/1:54:34,20:34:1220:20:720:-48.8732,0,-93.8512	0/1:76:28,48:28:1004:48:1713:-131.576,0,-67.7976	0/1:73:37,36:37:1328:36:1296:-94.9687,0,-97.847	0/1:35:9,26:9:324:26:936:-74.0234,0,-18.9698	0/1:67:26,41:26:936:41:1452:-110.805,0,-64.3905	0/1:65:44,21:44:1576:21:752:-48.4393,0,-122.565	1/1:165:0,165:0:0:165:5880:-529.314,-49.67,0	1/1:123:0,123:0:0:123:4416:-397.611,-37.0267,0
chr03	28819918	.	A	G	17839.1	PASS	AB=0.423545;ABP=119.889;AC=52;AF=0.276596;AN=188;AO=987;CIGAR=1X;DP=4826;DPB=4826;DPRA=0.846137;EPP=1270.43;EPPR=3575.04;GTI=4;LEN=1;MEANALT=1.05085;MQM=59.9909;MQMR=59.999;NS=94;NUMALT=1;ODDS=0.240019;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35261;QR=136892;RO=3836;RPL=873;RPP=1270.43;RPPR=3558;RPR=114;RUN=1;SAF=987;SAP=2146.25;SAR=0;SRF=3833;SRP=8306.74;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:13,6:13:464:6:216:-14.0709,0,-36.3779	0/1:51:25,26:25:885:26:932:-68.8463,0,-64.614	0/1:143:105,38:105:3760:38:1356:-79.2932,0,-295.552	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/1:7:6,1:6:201:1:36:-1.49107,0,-16.3098	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	0/1:54:33,21:33:1184:21:756:-52.1116,0,-90.6127	0/1:34:24,10:24:860:10:356:-22.1462,0,-67.4868	0/1:30:15,15:15:536:15:540:-39.9056,0,-39.5439	0/1:26:10,16:10:360:16:572:-43.9866,0,-24.9175	0/1:70:31,39:31:1108:39:1396:-104.867,0,-78.9589	0/1:43:30,13:30:1076:13:468:-29.5154,0,-84.2086	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:52:29,23:29:1031:23:815:-58.0172,0,-77.4491	0/1:47:22,25:22:788:25:896:-66.8119,0,-57.0964	0/1:28:14,14:14:504:14:487:-35.7304,0,-37.2693	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/0:117:116,1:116:4114:1:36:0,-31.6222,-366.847	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:50:34,16:34:1216:16:572:-36.7619,0,-94.6951	0/0:31:28,2:28:996:2:72:0,-2.554,-83.1183	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:130:78,52:78:2800:52:1825:-125.392,0,-213.106	0/0:158:158,0:158:5652:0:0:0,-47.5627,-508.801	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/0:137:137,0:137:4901:0:0:0,-41.2411,-441.24	0/1:60:36,24:36:1280:24:850:-58.7576,0,-97.4414	0/0:53:53,0:53:1854:0:0:0,-15.9546,-167.136	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:124:124,0:124:4439:0:0:0,-37.3277,-399.68	0/1:70:44,26:44:1572:26:924:-62.4056,0,-120.699	0/1:29:17,12:17:612:12:428:-30.1289,0,-46.6836	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:86:52,34:52:1864:34:1216:-83.858,0,-142.151	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:87:86,1:86:3068:1:36:0,-22.5913,-272.751	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/0:94:94,0:94:3356:0:0:0,-28.2968,-302.257	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.58	0/0:63:63,0:63:2233:0:0:0,-18.9649,-201.233	0/1:117:76,41:76:2686:41:1472:-97.5556,0,-206.762	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:91:55,36:55:1957:36:1296:-89.5502,0,-149.01	0/1:26:16,10:16:572:10:360:-24.9175,0,-43.9866	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.403	0/1:19:13,5:13:464:5:180:-10.7737,0,-36.3194	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:41:22,18:22:784:18:648:-46.2509,0,-58.483	0/1:73:37,36:37:1328:36:1292:-94.6086,0,-97.847	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	0/0:99:94,5:94:3348:5:180:0,-13.2499,-284.986	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:111:111,0:111:3945:0:0:0,-33.4143,-355.243	0/1:80:34,46:34:1220:46:1648:-124.526,0,-86.0244	0/0:26:25,1:25:896:1:36:0,-4.2285,-77.3621	0/1:24:10,14:10:352:14:496:-37.7495,0,-24.7935	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:85:85,0:85:2990:0:0:0,-25.5875,-269.332	0/1:61:43,18:43:1536:18:644:-39.9278,0,-120.17	0/1:104:64,40:64:2247:40:1427:-97.4197,0,-171.182	0/1:86:51,35:51:1813:35:1256:-87.4567,0,-137.561	0/1:27:17,10:17:589:10:354:-24.0717,0,-45.2055	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	0/1:42:27,15:27:964:15:536:-35.9316,0,-74.4336	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	0/0:97:96,1:96:3428:1:36:0,-25.6016,-305.136	0/1:36:16,20:16:576:20:712:-53.5696,0,-41.3379	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:30:19,11:19:676:11:385:-25.9526,0,-52.1371	0/0:78:77,1:77:2768:1:36:0,-19.8821,-245.761	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:44:25,19:25:891:19:680:-48.2838,0,-67.2635	0/1:61:34,27:34:1212:27:972:-69.4351,0,-91.0235	0/1:18:7,11:7:248:11:383:-29.3847,0,-17.2457	0/1:78:35,43:35:1260:43:1527:-114.241,0,-90.2251	0/1:43:12,31:12:432:31:1116:-87.8074,0,-26.2769	0/0:126:126,0:126:4495:0:0:0,-37.9298,-404.72	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83
chr03	28840170	.	T	C	122455	PASS	AB=0.482384;ABP=15.4044;AC=133;AF=0.715054;AN=186;AO=5981;CIGAR=1X;DP=8376;DPB=8376;DPRA=91.0326;EPP=12964.5;EPPR=5190.66;GTI=1;LEN=1;MEANALT=1.05435;MQM=59.9967;MQMR=60;NS=93;NUMALT=1;ODDS=3.95698;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212040;QR=85448;RO=2389;RPL=4;RPP=12955.9;RPPR=5190.66;RPR=5977;RUN=1;SAF=1;SAP=12981.9;SAR=5980;SRF=0;SRP=5190.66;SRR=2389;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:17,8:17:604:8:269:-17.0104,0,-47.1649	0/1:100:50,49:50:1791:49:1752:-127.802,0,-131.31	0/1:97:57,40:57:2043:40:1419:-98.8067,0,-154.941	1/1:119:0,119:0:0:119:4226:-380.522,-35.8226,0	0/1:41:27,14:27:959:14:504:-33.3559,0,-74.2832	0/1:42:19,23:19:676:23:809:-60.4861,0,-48.5247	0/1:99:53,46:53:1896:46:1640:-118.087,0,-141.116	0/1:151:77,74:77:2764:74:2636:-192.029,0,-203.546	0/1:70:41,29:41:1460:29:1032:-72.1214,0,-110.624	0/1:125:64,61:64:2276:61:2160:-157.036,0,-167.474	0/1:33:22,11:22:784:11:384:-24.9601,0,-60.9499	0/1:96:50,46:50:1796:46:1630:-118.088,0,-133.023	0/1:63:32,31:32:1140:31:1108:-81.0661,0,-83.9443	1/1:103:0,103:0:0:103:3615:-325.557,-31.0061,0	0/1:84:47,37:47:1676:37:1324:-94.1756,0,-125.841	0/1:55:30,25:30:1072:25:875:-62.5095,0,-80.2358	0/1:160:92,68:92:3287:68:2391:-167.281,0,-247.885	1/1:77:0,77:0:0:77:2711:-244.236,-23.1793,0	0/1:38:23,15:23:824:15:540:-37.4974,0,-63.0442	1/1:106:0,106:0:0:106:3757:-338.328,-31.9092,0	1/1:108:2,106:2:72:106:3778:-333.384,-25.6745,0	1/1:32:0,32:0:0:32:1120:-101.104,-9.63296,0	0/1:94:37,57:37:1328:57:2010:-152.875,0,-91.5254	0/1:157:73,83:73:2612:83:2957:-219.042,0,-188.008	1/1:35:0,35:0:0:35:1245:-112.353,-10.5361,0	0/1:345:159,185:159:5692:185:6571:-487.56,0,-408.482	1/1:102:0,102:0:0:102:3641:-327.895,-30.7051,0	0/1:59:27,32:27:972:32:1148:-85.8691,0,-70.0371	1/1:107:0,107:0:0:107:3784:-340.759,-32.2102,0	0/1:129:60,69:60:2160:69:2472:-183.901,0,-155.834	1/1:150:0,149:0:0:149:5235:-470.931,-44.8535,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:12:4,8:4:144:8:279:-21.8352,0,-9.70126	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:223:0,223:0:0:223:7838:-705.459,-67.1297,0	0/1:159:79,80:79:2823:80:2831:-207.161,0,-206.445	0/1:68:43,25:43:1548:25:896:-60.4903,0,-119.143	.:.:.:.:.:.:.:.	0/1:106:58,48:58:2080:48:1712:-122.457,0,-155.561	1/1:117:0,117:0:0:117:4134:-372.245,-35.2205,0	1/1:80:0,80:0:0:80:2837:-255.551,-24.0824,0	1/1:46:0,46:0:0:46:1614:-145.548,-13.8474,0	1/1:85:0,85:0:0:85:2941:-264.924,-25.5876,0	1/1:156:0,156:0:0:156:5525:-497.38,-46.9607,0	0/1:77:32,45:32:1131:45:1620:-122.911,0,-78.9184	1/1:124:0,124:0:0:124:4415:-397.522,-37.3277,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	1/1:101:1,100:1:36:100:3545:-315.661,-26.8058,0	0/1:171:93,78:93:3328:78:2769:-197.974,0,-248.262	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:110:56,54:56:2004:54:1919:-139.873,0,-147.52	0/1:29:14,15:14:500:15:532:-39.4832,0,-36.6063	0/1:24:16,8:16:576:8:288:-19.0427,0,-44.9503	1/1:95:0,95:0:0:95:3391:-305.405,-28.5979,0	0/1:50:21,29:21:756:29:1017:-76.7883,0,-53.3157	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:25:14,11:14:504:11:377:-26.7322,0,-38.1723	0/1:78:48,30:48:1705:30:1055:-71.7797,0,-130.254	0/1:148:68,80:68:2432:80:2843:-211.556,0,-174.583	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:194:0,194:0:0:194:6885:-619.719,-58.3998,0	1/1:230:0,228:0:0:228:8128:-731.18,-68.6348,0	1/1:78:0,78:0:0:78:2775:-249.991,-23.4803,0	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	1/1:138:5,133:5:180:133:4737:-409.937,-24.9901,0	0/1:73:57,16:57:2036:16:564:-29.1151,0,-161.537	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:72:36,36:36:1284:36:1277:-93.558,0,-94.1893	1/1:126:0,126:0:0:126:4468:-402.293,-37.9298,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	0/1:65:33,32:33:1184:32:1139:-83.2514,0,-87.3014	0/1:120:60,60:60:2148:60:2152:-157.824,0,-157.464	0/1:135:59,76:59:2124:76:2699:-202.516,0,-150.789	0/1:214:111,103:111:3972:103:3638:-263.205,0,-293.251	1/1:130:3,127:3:108:127:4535:-398.241,-29.0587,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:102:50,52:50:1785:52:1860:-136.975,0,-130.226	1/1:59:0,59:0:0:59:2103:-189.539,-17.7608,0	1/1:178:0,178:0:0:178:6324:-569.254,-53.5833,0	0/1:147:70,77:70:2499:77:2709:-199.802,0,-180.911	1/1:54:0,54:0:0:54:1902:-171.457,-16.2556,0	0/1:114:51,63:51:1807:63:2194:-163.406,0,-128.594	1/1:178:0,178:0:0:178:6242:-561.883,-53.5833,0	0/1:60:24,36:24:864:36:1280:-97.4414,0,-60.0208	0/1:78:42,36:42:1508:36:1258:-90.0404,0,-112.534	0/1:70:40,30:40:1423:30:1059:-74.5483,0,-107.295	0/1:30:18,12:18:644:12:428:-29.8279,0,-49.2597	0/1:72:30,42:30:1068:42:1477:-111.546,0,-74.7579	0/1:105:83,22:83:2967:22:788:-39.6366,0,-235.654	1/1:56:0,56:0:0:56:2007:-180.903,-16.8577,0	1/1:126:0,126:0:0:126:4472:-402.651,-37.9298,0
chr03	28867422	.	T	C	160208	PASS	AB=0.483691;ABP=15.0509;AC=134;AF=0.712766;AN=188;AO=7668;CIGAR=1X;DP=10380;DPB=10380;DPRA=111.602;EPP=16653.9;EPPR=5861.64;GTI=4;LEN=1;MEANALT=1.11828;MQM=59.985;MQMR=59.9985;NS=94;NUMALT=1;ODDS=0.241887;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273454;QR=96225;RO=2698;RPL=7668;RPP=16653.9;RPPR=5861.64;RPR=0;RUN=1;SAF=0;SAP=16653.9;SAR=7668;SRF=0;SRP=5861.64;SRR=2698;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:35,38:35:1241:38:1338:-98.7408,0,-90.0173	0/1:121:57,64:57:2040:64:2265:-167.687,0,-147.447	0/1:143:86,57:86:3079:57:2017:-138.754,0,-234.29	1/1:250:0,249:0:0:249:8869:-797.839,-74.9565,0	0/1:85:21,63:21:737:63:2252:-177.336,0,-41.0428	0/1:65:35,30:35:1241:30:1057:-75.872,0,-92.4256	0/1:102:45,56:45:1620:56:2008:-150.269,0,-115.365	0/1:230:122,108:122:4364:108:3833:-275.93,0,-323.698	0/1:163:73,90:73:2624:90:3232:-242.032,0,-187.339	0/1:138:79,59:79:2802:59:2112:-148.807,0,-210.876	0/1:50:28,22:28:989:22:792:-56.5542,0,-74.2705	0/1:105:60,45:60:2145:45:1604:-113.042,0,-161.708	0/1:93:57,36:57:2037:36:1288:-88.2278,0,-155.604	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	0/1:73:42,31:42:1512:31:1112:-78.4162,0,-114.399	0/1:55:25,30:25:892:30:1072:-80.2358,0,-64.043	0/1:53:30,23:30:1061:23:809:-57.1746,0,-79.8448	1/1:42:0,42:0:0:42:1494:-134.753,-12.6433,0	0/1:37:22,15:22:777:15:540:-37.7984,0,-59.1123	1/1:214:0,213:0:0:213:7601:-683.699,-64.1194,0	1/1:271:0,271:0:0:271:9696:-872.591,-81.5791,0	1/1:137:0,137:0:0:137:4912:-442.23,-41.2411,0	0/1:173:100,72:100:3550:72:2580:-180.312,0,-267.57	0/1:197:77,119:77:2760:119:4227:-321.355,0,-189.386	1/1:93:1,92:1:36:92:3275:-291.372,-24.3975,0	0/1:379:168,211:168:6020:211:7511:-561.942,0,-427.814	1/1:277:1,276:1:32:276:9868:-884.859,-80.186,0	0/1:40:22,18:22:792:18:636:-45.4974,0,-59.5645	1/1:299:0,299:0:0:299:10682:-961.288,-90.008,0	0/1:107:33,73:33:1154:73:2624:-204.138,0,-71.8935	1/1:195:0,195:0:0:195:6968:-627.187,-58.7009,0	1/1:8:0,8:0:0:8:275:-25.0827,-2.40824,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:193:0,193:0:0:193:6900:-621.066,-58.0988,0	0/1:122:57,65:57:2040:65:2324:-172.694,0,-147.146	0/1:57:29,28:29:1044:28:1004:-73.5172,0,-77.1161	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:109:50,57:50:1781:57:2044:-151.662,0,-128.001	1/1:25:0,25:0:0:25:892:-80.585,-7.52575,0	1/1:173:0,173:0:0:173:6115:-550.455,-52.0782,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	1/1:152:2,150:2:72:150:5368:-476.416,-38.9198,0	0/1:149:63,86:63:2248:86:3065:-231.224,0,-157.73	1/1:194:0,194:0:0:194:6926:-623.406,-58.3998,0	1/1:89:2,87:2:72:87:3116:-273.83,-19.9549,0	1/1:146:0,146:0:0:146:5228:-470.658,-43.9504,0	0/1:107:65,42:65:2298:42:1492:-102.363,0,-174.868	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:132:63,69:63:2256:69:2472:-182.998,0,-163.567	0/1:78:45,32:45:1605:32:1133:-78.883,0,-121.346	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	1/1:145:0,145:0:0:145:5154:-464.002,-43.6494,0	0/1:58:28,30:28:985:30:1068:-78.9723,0,-71.5018	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:16:8,8:8:288:8:273:-20.0837,0,-21.4509	0/1:73:56,17:56:1982:17:604:-32.7154,0,-156.676	0/1:101:48,53:48:1720:53:1904:-141.234,0,-124.681	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:239:0,239:0:0:239:8476:-762.846,-71.9462,0	1/1:293:5,288:5:180:288:10267:-907.405,-71.6497,0	1/1:77:0,77:0:0:77:2729:-245.853,-23.1793,0	1/1:103:0,103:0:0:103:3642:-327.957,-31.0061,0	1/1:260:2,256:2:68:256:9119:-814.216,-71.5579,0	0/1:126:77,49:77:2726:49:1738:-118.774,0,-207.651	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:120:61,59:61:2177:59:2101:-153.235,0,-160.071	1/1:56:0,56:0:0:56:1997:-180.002,-16.8577,0	0/1:32:17,15:17:597:15:525:-37.9451,0,-44.4232	1/1:103:0,103:0:0:103:3647:-328.432,-31.0061,0	0/1:105:53,52:53:1892:52:1856:-135.712,0,-138.949	0/1:271:146,125:146:5180:125:4423:-316.662,0,-384.759	0/1:230:113,115:113:4060:115:4093:-299.561,0,-296.591	0/1:104:52,52:52:1853:52:1854:-135.832,0,-135.741	1/1:111:2,109:2:72:109:3897:-344.086,-26.5776,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:138:74,64:74:2641:64:2292:-164.995,0,-196.393	1/1:143:0,143:0:0:143:5106:-459.684,-43.0473,0	1/1:184:0,184:0:0:184:6588:-593,-55.3895,0	0/1:90:49,41:49:1749:41:1472:-105.67,0,-130.599	1/1:35:0,35:0:0:35:1243:-112.175,-10.5361,0	0/1:96:60,36:60:2118:36:1288:-87.3247,0,-161.987	1/1:153:1,152:1:32:152:5435:-486.08,-42.8583,0	0/1:28:17,11:17:612:11:392:-27.1912,0,-46.9846	0/1:83:43,40:43:1544:40:1428:-103.832,0,-114.268	0/1:68:36,32:36:1273:32:1140:-82.4392,0,-94.4009	0/1:37:20,17:20:716:17:605:-43.6429,0,-53.6296	0/1:81:48,33:48:1728:33:1172:-81.4041,0,-131.422	0/1:81:70,11:70:2499:11:384:-10.5107,0,-200.779	1/1:152:0,152:0:0:152:5412:-487.212,-45.7566,0	1/1:94:0,94:0:0:94:3366:-303.156,-28.2968,0
chr03	28870831	.	A	G	114908	PASS	AB=0.560117;ABP=110.056;AC=134;AF=0.712766;AN=188;AO=5695;CIGAR=1X;DP=7204;DPB=7204;DPRA=38.7204;EPP=12369.5;EPPR=3268.9;GTI=5;LEN=1;MEANALT=1.05376;MQM=59.9684;MQMR=59.9555;NS=94;NUMALT=1;ODDS=2.04538;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197225;QR=53105;RO=1504;RPL=0;RPP=12369.5;RPPR=3268.9;RPR=5695;RUN=1;SAF=0;SAP=12369.5;SAR=5695;SRF=0;SRP=3268.9;SRR=1504;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:12,6:12:424:6:216:-14.372,0,-33.0779	0/1:90:38,52:38:1359:52:1824:-137.346,0,-95.5171	0/1:124:60,64:60:2137:64:2238:-164.354,0,-154.412	1/1:224:0,224:0:0:224:7883:-709.506,-67.4307,0	0/1:77:35,42:35:1231:42:1489:-111.124,0,-87.9139	0/1:67:41,26:41:1455:26:880:-59.3379,0,-111.076	0/1:137:53,84:53:1852:84:2916:-221.43,0,-125.716	0/1:127:64,63:64:2259:63:2154:-155.894,0,-165.34	0/1:43:29,14:29:1027:14:477:-30.3089,0,-79.7979	0/1:97:41,56:41:1427:56:1955:-147.024,0,-99.5223	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:24:7,17:7:252:17:580:-45.2955,0,-15.8042	0/1:32:7,25:7:248:25:865:-68.53,0,-13.0312	1/1:34:0,34:0:0:34:1191:-107.494,-10.235,0	0/1:28:9,19:9:324:19:664:-51.6557,0,-21.077	0/1:20:6,14:6:216:14:476:-37.142,0,-13.7699	0/1:28:7,21:7:252:21:735:-58.0426,0,-14.6001	1/1:31:0,31:0:0:31:1059:-95.6101,-9.33193,0	0/1:21:7,14:7:252:14:468:-36.1165,0,-16.7073	1/1:258:1,257:1:36:257:8871:-794.795,-74.0675,0	1/1:101:0,101:0:0:101:3463:-311.885,-30.404,0	1/1:133:0,133:0:0:133:4549:-409.583,-40.037,0	0/1:88:41,47:41:1449:47:1669:-124.006,0,-104.213	0/1:101:44,57:44:1551:57:1982:-148.245,0,-109.477	1/1:86:1,85:1:36:85:2884:-256.195,-22.2903,0	0/1:320:156,163:156:5566:163:5635:-411.045,0,-404.825	1/1:177:0,177:0:0:177:6012:-541.199,-53.2823,0	0/1:7:2,5:2:59:5:176:-14.0778,0,-3.49693	1/1:309:0,309:0:0:309:10787:-970.751,-93.0183,0	0/1:115:45,70:45:1580:70:2488:-189.554,0,-107.869	1/1:126:0,126:0:0:126:4354:-391.879,-37.9298,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:8:5,3:5:180:3:92:-6.17517,0,-14.1438	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:110:0,110:0:0:110:3765:-339.053,-33.1133,0	0/1:129:66,63:66:2342:63:2179:-157.54,0,-172.206	0/1:18:10,8:10:336:8:273:-19.4816,0,-25.1447	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:147:50,97:50:1775:97:3348:-257.291,0,-115.758	1/1:18:0,18:0:0:18:594:-53.7703,-5.41854,0	1/1:109:0,108:0:0:108:3732:-335.709,-32.5112,0	1/1:29:0,29:0:0:29:1017:-91.8398,-8.72987,0	1/1:15:0,15:0:0:15:456:-41.332,-4.51545,0	1/1:114:0,114:0:0:114:3960:-356.596,-34.3174,0	0/1:90:38,52:38:1313:52:1796:-134.824,0,-91.3718	1/1:128:0,128:0:0:128:4432:-399.057,-38.5318,0	1/1:138:0,138:0:0:138:4846:-436.291,-41.5421,0	1/1:98:0,98:0:0:98:3435:-309.364,-29.5009,0	0/1:132:45,87:45:1581:87:3008:-231.214,0,-102.842	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:125:51,74:51:1811:74:2594:-196.079,0,-125.642	0/1:63:28,35:28:987:35:1247:-93.5692,0,-70.1781	0/1:12:6,6:6:216:6:198:-14.5309,0,-16.1782	1/1:96:0,96:0:0:96:3157:-284.355,-28.8989,0	0/1:57:27,30:27:956:30:1059:-78.4617,0,-69.197	1/1:5:0,5:0:0:5:168:-15.4509,-1.50515,0	0/1:14:5,9:5:180:9:306:-23.6539,0,-12.3376	0/1:61:32,29:32:1148:29:1008:-72.6652,0,-85.267	0/1:61:17,44:17:603:44:1511:-117.915,0,-36.2367	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:203:0,203:0:0:203:6926:-623.43,-61.1091,0	1/1:149:0,149:0:0:149:5173:-465.717,-44.8535,0	1/1:67:0,67:0:0:67:2367:-213.289,-20.169,0	1/1:82:0,82:0:0:82:2777:-250.169,-24.6845,0	1/1:169:0,169:0:0:169:5859:-527.43,-50.8741,0	0/1:120:68,52:68:2392:52:1789:-125.161,0,-179.413	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:62:35,27:35:1256:27:960:-68.0524,0,-94.6814	1/1:47:0,47:0:0:47:1606:-144.823,-14.1484,0	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0812	1/1:149:0,148:0:0:148:5129:-461.393,-44.5524,0	0/1:37:15,22:15:528:22:771:-58.5722,0,-36.7133	0/1:121:56,64:56:1959:64:2209:-162.735,0,-140.247	0/1:178:70,108:70:2454:108:3755:-284.562,0,-167.527	0/1:57:27,30:27:936:30:1029:-75.7559,0,-67.3043	1/1:38:0,38:0:0:38:1339:-120.809,-11.4391,0	0/1:6:4,2:4:136:2:72:-5.03054,0,-10.7694	0/1:89:38,51:38:1344:51:1787:-134.317,0,-94.4685	1/1:107:0,107:0:0:107:3759:-338.511,-32.2102,0	1/1:141:1,139:1:36:139:4886:-436.3,-38.9058,0	0/1:59:26,33:26:924:33:1148:-85.8622,0,-65.7169	1/1:37:0,37:0:0:37:1305:-117.749,-11.1381,0	0/1:30:12,18:12:407:18:615:-46.6366,0,-27.9246	1/1:84:0,84:0:0:84:2919:-262.939,-25.2865,0	0/1:26:10,16:10:323:16:568:-43.6251,0,-21.5557	0/1:28:6,22:6:212:22:745:-58.9343,0,-10.996	0/1:38:14,24:14:491:24:841:-64.5672,0,-33.082	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:22:4,18:4:135:18:615:-49.0467,0,-5.85985	0/1:21:13,8:13:468:8:280:-19.2177,0,-36.138	1/1:97:1,96:1:36:96:3276:-291.456,-25.6016,0	1/1:62:0,62:0:0:62:2171:-195.652,-18.6639,0
chr03	28870859	.	G	A	144527	PASS	AB=0.571469;ABP=160.686;AC=134;AF=0.712766;AN=188;AO=6114;CIGAR=1X;DP=7643;DPB=7643;DPRA=41.0806;EPP=9430.16;EPPR=2176.9;GTI=5;LEN=1;MEANALT=1.03226;MQM=59.9318;MQMR=59.9751;NS=94;NUMALT=1;ODDS=1.28924;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218790;QR=53768;RO=1526;RPL=5633;RPP=9430.16;RPPR=2176.9;RPR=481;RUN=1;SAF=0;SAP=13279.4;SAR=6114;SRF=0;SRP=3316.68;SRR=1526;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:10,6:10:348:6:216:-14.974,0,-26.8387	0/1:91:35,56:35:1244:56:2008:-153.6,0,-84.8709	0/1:130:60,69:60:2123:69:2461:-182.692,0,-152.288	1/1:240:0,240:0:0:240:8586:-772.729,-72.2472,0	0/1:78:35,43:35:1236:43:1548:-116.133,0,-88.0639	0/1:70:43,27:43:1512:27:968:-66.3653,0,-115.298	0/1:147:57,90:57:2003:90:3231:-246.757,0,-136.161	0/1:134:65,69:65:2264:69:2484:-183.475,0,-163.684	0/1:43:30,13:30:1064:13:468:-29.5154,0,-83.1274	0/1:98:41,57:41:1421:57:2048:-155.086,0,-98.6825	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/1:25:6,19:6:212:19:671:-53.19,0,-11.899	0/1:34:7,27:7:243:27:968:-77.2023,0,-11.9725	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:29:9,20:9:320:20:720:-56.3989,0,-20.4125	0/1:23:6,17:6:216:17:611:-48.3995,0,-12.8668	0/1:29:6,23:6:216:23:804:-63.9456,0,-11.0606	1/1:31:0,31:0:0:31:1103:-99.5798,-9.33193,0	0/1:23:8,15:8:269:15:540:-42.0128,0,-17.6124	1/1:274:1,273:1:36:273:9755:-874.27,-78.8839,0	1/1:113:0,113:0:0:113:4012:-361.263,-34.0164,0	1/1:143:0,143:0:0:143:5116:-460.583,-43.0473,0	0/1:93:43,50:43:1502:50:1770:-131.585,0,-107.476	0/1:101:41,60:41:1456:60:2145:-162.907,0,-100.932	1/1:96:0,96:0:0:96:3430:-308.913,-28.8989,0	0/1:330:158,172:158:5590:172:6160:-455.157,0,-403.89	1/1:189:0,189:0:0:189:6783:-610.534,-56.8947,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:331:0,331:0:0:331:11829:-1064.47,-99.6409,0	0/1:115:45,70:45:1595:70:2512:-191.582,0,-109.221	1/1:134:0,134:0:0:134:4744:-426.78,-40.338,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:7:5,2:5:167:2:72:-4.72951,0,-13.2512	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:119:0,119:0:0:119:4254:-383.035,-35.8226,0	0/1:132:68,64:68:2401:64:2290:-166.625,0,-176.61	0/1:19:10,9:10:343:9:324:-23.7863,0,-25.481	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:158:50,108:50:1752:108:3863:-300.3,0,-110.376	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:115:0,115:0:0:115:4116:-370.623,-34.6185,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:24:0,24:0:0:24:851:-76.9095,-7.22472,0	1/1:122:0,122:0:0:122:4349:-391.58,-36.7257,0	0/1:99:38,61:38:1331:61:2171:-165.854,0,-90.287	1/1:146:0,146:0:0:146:5211:-469.128,-43.9504,0	1/1:141:0,141:0:0:141:5072:-456.58,-42.4452,0	1/1:102:0,102:0:0:102:3657:-329.331,-30.7051,0	0/1:138:45,93:45:1607:93:3341:-259.364,0,-103.377	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:129:50,79:50:1783:79:2840:-216.749,0,-121.919	0/1:69:31,38:31:1100:38:1364:-102.29,0,-78.5392	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	1/1:104:0,104:0:0:104:3740:-336.799,-31.3071,0	0/1:60:28,32:28:968:32:1141:-84.9363,0,-69.3669	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:15:5,9:5:176:9:324:-25.0371,0,-11.712	0/1:62:32,30:32:1117:30:1050:-76.1433,0,-82.1713	0/1:63:18,45:18:644:45:1620:-127.125,0,-39.3257	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:229:0,229:0:0:229:8199:-737.918,-68.9359,0	1/1:160:1,159:1:36:159:5712:-510.597,-44.5665,0	1/1:71:0,71:0:0:71:2514:-226.511,-21.3731,0	1/1:93:0,93:0:0:93:3316:-298.653,-27.9958,0	1/1:173:0,173:0:0:173:6209:-558.903,-52.0782,0	0/1:119:62,57:62:2190:57:2048:-148.769,0,-161.543	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:73:43,30:43:1518:30:1076:-75.1777,0,-114.936	1/1:55:0,55:0:0:55:1971:-177.665,-16.5567,0	0/1:9:6,3:6:203:3:108:-7.3659,0,-15.8919	1/1:164:0,164:0:0:164:5856:-527.142,-49.3689,0	0/1:39:15,24:15:532:24:864:-66.3424,0,-36.4729	0/1:129:61,68:61:2126:68:2429:-180.032,0,-152.775	0/1:182:73,109:73:2600:109:3911:-297.394,0,-179.462	0/1:59:28,30:28:987:30:1067:-78.6676,0,-71.4692	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:6:4,2:4:131:2:72:-5.03054,0,-10.3073	0/1:89:37,52:37:1316:52:1872:-141.963,0,-91.9501	1/1:112:0,112:0:0:112:4028:-362.689,-33.7154,0	1/1:149:1,148:1:36:148:5318:-475.153,-41.2552,0	0/1:64:26,38:26:917:38:1364:-103.79,0,-63.5787	1/1:41:0,41:0:0:41:1472:-132.759,-12.3422,0	0/1:33:12,21:12:409:21:756:-58.4309,0,-27.2014	1/1:86:0,86:0:0:86:3084:-277.776,-25.8886,0	0/1:26:10,16:10:360:16:567:-43.5339,0,-24.9175	0/1:31:7,24:7:252:24:851:-67.5775,0,-13.697	0/1:39:14,25:14:495:25:885:-68.2264,0,-33.1429	0/1:10:3,7:3:104:7:252:-20.0187,0,-6.69251	0/1:24:4,20:4:140:20:707:-56.7299,0,-5.71986	0/1:23:14,9:14:481:9:320:-22.2187,0,-36.6914	1/1:108:1,107:1:36:107:3835:-341.73,-28.913,0	1/1:68:0,68:0:0:68:2426:-218.592,-20.47,0
chr03	28873525	.	T	C	163419	PASS	AB=0.496335;ABP=3.45596;AC=134;AF=0.72043;AN=186;AO=6094;CIGAR=1X;DP=8026;DPB=8026;DPRA=0;EPP=603.356;EPPR=93.7576;GTI=1;LEN=1;MEANALT=1.02151;MQM=58.4363;MQMR=59.814;NS=93;NUMALT=1;ODDS=1.97893;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=217384;QR=69110;RO=1930;RPL=2398;RPP=603.356;RPPR=93.7576;RPR=3696;RUN=1;SAF=6094;SAP=13236;SAR=0;SRF=1930;SRP=4193.95;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:38,29:38:1364:29:1040:-72.5138,0,-102.589	0/1:28:13,15:13:468:15:528:-39.4013,0,-34.0293	0/1:88:34,54:34:1216:54:1940:-147.364,0,-83.2522	1/1:149:0,149:0:0:149:5319:-478.303,-44.8535,0	0/1:44:27,17:27:972:17:612:-42.0565,0,-74.5526	0/1:41:20,21:20:720:21:752:-55.6325,0,-52.7865	0/1:90:35,55:35:1260:55:1980:-151.316,0,-86.581	0/1:117:65,52:65:2340:52:1861:-132.362,0,-175.638	0/1:70:40,30:40:1432:30:1063:-74.7851,0,-108.102	0/1:106:43,63:43:1539:63:2264:-172.053,0,-106.876	0/1:36:12,24:12:432:24:860:-66.8309,0,-28.3841	0/1:105:55,50:55:1967:50:1778:-128.573,0,-145.69	0/1:65:29,36:29:1040:36:1292:-96.8239,0,-74.3474	1/1:60:0,60:0:0:60:2138:-192.482,-18.0618,0	0/1:72:43,29:43:1540:29:1024:-70.7955,0,-117.219	0/1:69:29,40:29:1025:40:1440:-109.066,0,-71.7896	0/1:32:14,18:14:504:18:644:-48.6204,0,-36.0651	1/1:28:0,28:0:0:28:992:-89.4848,-8.42884,0	0/1:18:10,8:10:360:8:288:-20.8346,0,-27.3242	1/1:83:0,83:0:0:83:2952:-265.824,-24.9855,0	1/1:140:0,140:0:0:140:4960:-445.381,-42.1442,0	1/1:163:0,163:0:0:163:5806:-522.128,-49.0679,0	0/1:122:70,52:70:2512:52:1838:-128.925,0,-189.606	0/1:36:20,16:20:716:16:576:-41.2054,0,-53.9302	1/1:59:0,59:0:0:59:2116:-190.613,-17.7608,0	0/1:253:130,123:130:4648:123:4391:-318.873,0,-342.286	1/1:168:0,168:0:0:168:5991:-538.747,-50.573,0	0/1:31:17,14:17:603:14:504:-36.3605,0,-45.2676	1/1:306:1,305:1:36:305:10882:-975.139,-88.5169,0	0/1:140:71,69:71:2547:69:2468:-180.141,0,-187.333	1/1:94:0,94:0:0:94:3359:-301.579,-28.2968,0	1/1:10:0,10:0:0:10:356:-32.3326,-3.0103,0	0/1:23:12,11:12:432:11:392:-28.622,0,-32.2975	1/1:4:0,4:0:0:4:135:-12.3704,-1.20412,0	1/1:4:0,4:0:0:4:140:-12.9392,-1.20412,0	1/1:8:0,8:0:0:8:288:-26.2549,-2.40824,0	1/1:228:1,227:1:36:227:8092:-724.663,-65.3358,0	0/1:141:78,63:78:2800:63:2240:-159.177,0,-209.764	0/1:54:20,34:20:720:34:1207:-92.5328,0,-48.8683	.:.:.:.:.:.:.:.	0/1:108:58,49:58:2080:49:1748:-124.9,0,-154.865	1/1:27:0,27:0:0:27:972:-87.7852,-8.12781,0	1/1:101:0,101:0:0:101:3589:-322.462,-30.404,0	1/1:72:0,72:0:0:72:2583:-232.681,-21.6742,0	1/1:64:1,63:1:36:63:2241:-198.313,-15.6676,0	1/1:114:0,114:0:0:114:4057:-365.233,-34.3174,0	0/1:97:48,49:48:1709:49:1744:-127.94,0,-124.875	1/1:225:0,225:0:0:225:8042:-723.239,-67.7318,0	1/1:87:0,87:0:0:87:3076:-276.965,-26.1896,0	1/1:86:0,86:0:0:86:3055:-275.083,-25.8886,0	0/1:65:26,39:26:928:39:1360:-103.053,0,-64.2713	1/1:4:0,4:0:0:4:144:-13.2845,-1.20412,0	0/1:63:30,33:30:1080:33:1176:-87.1336,0,-78.5468	0/1:65:33,32:33:1184:32:1135:-82.8301,0,-87.3014	0/1:5:3,2:3:108:2:72:-5.32832,0,-8.57002	1/1:113:0,113:0:0:113:4042:-363.439,-34.0164,0	0/1:44:18,26:18:648:26:924:-70.2315,0,-45.4066	1/1:3:0,3:0:0:3:108:-10.057,-0.90309,0	0/1:14:9,5:9:324:5:180:-12.3361,0,-25.2914	0/1:75:30,45:30:1057:45:1607:-122.1,0,-72.8609	0/1:115:61,54:61:2162:54:1936:-139.85,0,-160.225	0/1:5:2,3:2:63:3:108:-8.57002,0,-4.47615	1/1:313:0,313:0:0:313:11161:-1003.29,-94.2224,0	1/1:168:0,168:0:0:168:5997:-539.584,-50.573,0	1/1:58:0,58:0:0:58:2075:-186.466,-17.4597,0	1/1:53:0,53:0:0:53:1887:-169.451,-15.9546,0	1/1:151:3,148:3:108:148:5282:-465.303,-35.3804,0	0/1:111:86,25:86:3092:25:863:-44.5589,0,-245.092	1/1:32:0,32:0:0:32:1152:-103.913,-9.63296,0	0/1:29:13,16:13:460:16:572:-43.0512,0,-33.0055	1/1:46:0,46:0:0:46:1636:-147.508,-13.8474,0	0/1:16:11,5:11:388:5:180:-11.7356,0,-30.4409	1/1:165:0,165:0:0:165:5891:-528.307,-49.67,0	0/1:79:37,42:37:1328:42:1508:-112.162,0,-95.7964	0/1:106:46,60:46:1648:60:2139:-160.806,0,-116.699	0/1:212:117,95:117:4188:95:3412:-243.415,0,-313.196	0/1:103:46,57:46:1652:57:2044:-152.908,0,-117.955	1/1:107:0,107:0:0:107:3832:-344.78,-32.2102,0	0/1:14:7,7:7:252:7:252:-18.8036,0,-18.8145	0/1:106:45,61:45:1616:61:2158:-162.494,0,-113.82	1/1:56:0,56:0:0:56:1983:-178.272,-16.8577,0	1/1:152:0,152:0:0:152:5435:-488.323,-45.7566,0	0/1:88:42,46:42:1495:46:1639:-121.21,0,-108.353	1/1:60:0,60:0:0:60:2147:-193.494,-18.0618,0	0/1:69:28,41:28:1008:41:1467:-111.525,0,-70.2653	1/1:157:1,156:1:36:156:5580:-498.533,-43.6634,0	0/1:41:17,24:17:612:24:855:-64.6724,0,-43.0712	0/1:69:39,30:39:1395:30:1072:-75.909,0,-105.077	0/1:75:37,38:37:1319:38:1333:-97.6251,0,-96.4244	0/1:34:11,23:11:396:23:824:-64.1501,0,-25.7477	0/1:71:33,38:33:1188:38:1352:-100.511,0,-85.8188	0/1:92:64,28:64:2285:28:999:-62.1586,0,-178.215	1/1:190:1,189:1:36:189:6743:-602.718,-53.5974,0	1/1:98:0,98:0:0:98:3507:-315.665,-29.5009,0
chr03	28879549	.	CG	CA	109948	PASS	AB=0.491755;ABP=5.19469;AC=133;AF=0.715054;AN=186;AO=5272;CIGAR=1M1X;DP=7180;DPB=7180;DPRA=19.7033;EPP=11425;EPPR=4091.97;GTI=2;LEN=1;MEANALT=1.05495;MQM=58.2365;MQMR=59.8236;NS=93;NUMALT=1;ODDS=2.45079;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188603;QR=66789;RO=1899;RPL=4;RPP=11416.3;RPPR=4100.62;RPR=5268;RUN=1;SAF=1;SAP=11442.3;SAR=5271;SRF=1;SRP=4117.96;SRR=1898;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:1,7:1:36:7:243:-19.763,0,-1.19003	0/1:72:36,36:36:1255:36:1292:-94.8656,0,-91.5177	0/1:87:35,52:35:1212:52:1850:-140.524,0,-83.188	1/1:207:2,205:2:72:205:7325:-652.194,-55.4765,0	0/1:34:14,20:14:491:20:720:-54.8468,0,-34.2834	0/1:36:23,13:23:824:13:464:-31.2604,0,-63.6464	0/1:108:60,48:60:2115:48:1728:-123.289,0,-158.106	0/1:114:53,61:53:1860:61:2169:-160.138,0,-133.332	0/1:51:20,31:20:710:31:1116:-85.2571,0,-48.8731	0/1:71:24,47:24:853:47:1673:-129.16,0,-55.7173	0/1:73:41,32:41:1441:32:1137:-80.6431,0,-108.007	0/1:66:31,35:31:1088:35:1260:-93.3397,0,-78.3568	0/1:71:33,38:33:1149:38:1364:-101.366,0,-82.34	1/1:87:0,86:0:0:86:3084:-276.944,-25.8886,0	0/1:62:36,26:36:1258:26:930:-65.0543,0,-94.8562	0/1:61:35,26:35:1229:26:932:-65.6107,0,-92.5474	0/1:77:44,33:44:1553:33:1188:-84.0053,0,-116.882	1/1:79:1,78:1:36:78:2786:-246.785,-20.1831,0	0/1:50:22,28:22:784:28:1004:-75.5601,0,-55.8328	1/1:101:0,101:0:0:101:3613:-325.093,-30.404,0	1/1:98:0,98:0:0:98:3479:-312.663,-29.5009,0	1/1:37:0,37:0:0:37:1314:-118.533,-11.1381,0	0/1:63:31,32:31:1095:32:1152:-84.9978,0,-79.8934	0/1:104:48,56:48:1658:56:2016:-150.107,0,-118.194	1/1:36:0,36:0:0:36:1292:-116.247,-10.8371,0	0/1:245:128,117:128:4524:117:4184:-302.918,0,-333.285	1/1:143:1,142:1:36:142:5070:-451.373,-39.4516,0	0/1:40:15,25:15:538:25:887:-68.0525,0,-36.7146	1/1:126:0,126:0:0:126:4515:-406.338,-37.9298,0	0/1:92:43,49:43:1497:49:1749:-129.271,0,-106.764	1/1:81:0,81:0:0:81:2908:-261.934,-24.3834,0	1/1:7:0,7:0:0:7:252:-23.0124,-2.10721,0	0/0:6:3,0:3:108:0:0:0,-0.90309,-9.72012	1/1:5:0,5:0:0:5:176:-16.1778,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	1/1:217:0,217:0:0:217:7776:-699.762,-65.3235,0	0/1:100:70,30:70:2445:30:1063:-65.8106,0,-190.194	0/1:85:35,50:35:1223:50:1784:-135.151,0,-84.784	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	0/1:133:61,70:61:2160:70:2507:-185.321,0,-154.877	1/1:41:0,41:0:0:41:1467:-132.152,-12.3422,0	1/1:79:0,79:0:0:79:2827:-254.008,-23.7814,0	1/1:77:0,77:0:0:77:2753:-247.272,-23.1793,0	1/1:83:0,83:0:0:83:2956:-266.21,-24.9855,0	1/1:93:0,93:0:0:93:3304:-297.459,-27.9958,0	0/1:84:46,38:46:1650:38:1364:-97.7293,0,-123.5	1/1:143:0,143:0:0:143:5086:-457.69,-43.0473,0	1/1:93:0,93:0:0:93:3339:-300.71,-27.9958,0	1/1:91:0,91:0:0:91:3259:-293.13,-27.3937,0	0/1:112:58,54:58:2055:54:1936:-140.744,0,-151.505	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:128:57,71:57:2004:71:2540:-189.748,0,-142.064	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3333	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:85:1,84:1:36:84:3020:-267.782,-21.9893,0	0/1:33:17,16:17:603:16:576:-42.2248,0,-44.666	1/1:2:0,2:0:0:2:72:-6.82813,-0.60206,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:58:36,22:36:1244:22:788:-53.6507,0,-94.7975	0/1:123:58,65:58:2060:65:2317:-171.51,0,-148.643	1/1:6:0,6:0:0:6:216:-19.7881,-1.80618,0	1/1:109:0,109:0:0:109:3907:-351.685,-32.8123,0	1/1:169:5,163:5:176:163:5849:-509.854,-34.6129,0	1/1:58:0,58:0:0:58:2076:-186.632,-17.4597,0	1/1:44:0,44:0:0:44:1574:-141.873,-13.2453,0	1/1:89:1,88:1:36:88:3160:-280.858,-23.1934,0	0/1:103:78,25:78:2754:25:896:-49.9405,0,-217.087	1/1:35:0,35:0:0:35:1243:-112.002,-10.5361,0	0/1:56:23,33:23:828:33:1184:-89.9098,0,-57.9864	1/1:104:0,104:0:0:104:3727:-335.065,-31.3071,0	0/1:25:11,14:11:361:14:504:-38.0999,0,-25.2803	1/1:144:0,144:0:0:144:5146:-463.104,-43.3483,0	0/1:30:11,19:11:372:19:680:-52.4901,0,-24.7735	0/1:142:74,68:74:2588:68:2443:-176.942,0,-190.406	0/1:129:51,78:51:1790:78:2804:-213.697,0,-122.547	0/1:59:41,18:41:1449:18:644:-40.5043,0,-112.914	1/1:112:5,107:5:173:107:3813:-327.088,-17.8056,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:75:33,42:33:1176:42:1508:-112.388,0,-83.5528	1/1:58:0,57:0:0:57:2029:-182.387,-17.1587,0	1/1:120:0,120:0:0:120:4299:-386.701,-36.1236,0	0/1:108:62,46:62:2143:46:1637:-114.7,0,-160.622	1/1:60:0,60:0:0:60:2156:-194.256,-18.0618,0	0/1:85:41,44:41:1450:44:1576:-116.42,0,-105.209	1/1:150:0,149:0:0:149:5330:-477.953,-44.8535,0	0/1:47:23,24:23:796:24:864:-63.8284,0,-57.8079	0/1:83:39,44:39:1370:44:1580:-117.47,0,-98.6125	0/1:56:29,27:29:1023:27:972:-70.9044,0,-75.524	0/1:40:22,18:22:755:18:648:-46.4803,0,-56.2208	0/1:112:60,52:60:2111:52:1860:-133.719,0,-156.45	0/1:65:45,20:45:1604:20:716:-45.1916,0,-125.083	1/1:105:0,105:0:0:105:3742:-336.948,-31.6082,0	1/1:88:0,88:0:0:88:3143:-282.936,-26.4906,0
chr03	28883642	.	T	C	41285.2	PASS	AB=0.524913;ABP=27.8957;AC=52;AF=0.27957;AN=186;AO=2431;CIGAR=1X;DP=9593;DPB=9593;DPRA=0.812608;EPP=5281.86;EPPR=15550.8;GTI=0;LEN=1;MEANALT=1.01786;MQM=59.694;MQMR=59.9353;NS=93;NUMALT=1;ODDS=0.169161;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86685;QR=255404;RO=7160;RPL=0;RPP=5281.86;RPPR=15516;RPR=2431;RUN=1;SAF=0;SAP=5281.86;SAR=2431;SRF=4;SRP=15516;SRR=7156;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:18,10:18:644:10:360:-24.3155,0,-49.8618	0/1:109:59,50:59:2085:50:1761:-125.943,0,-155.098	0/1:81:47,34:47:1680:34:1200:-83.914,0,-127.104	0/0:280:280,0:280:9987:0:0:0,-84.2884,-898.764	0/1:47:17,30:17:608:30:1076:-82.9884,0,-40.9036	0/1:28:20,8:20:712:8:288:-17.8352,0,-55.9778	0/1:44:21,23:21:748:23:820:-60.8464,0,-54.4	0/1:172:67,105:67:2373:105:3767:-287.383,0,-162.05	0/1:147:65,82:65:2320:82:2910:-217.824,0,-164.809	0/1:91:43,48:43:1540:48:1699:-125.799,0,-111.499	0/1:89:47,42:47:1680:42:1500:-108.488,0,-124.505	0/1:137:74,63:74:2647:63:2248:-161.32,0,-197.234	0/1:88:41,47:41:1460:47:1676:-124.628,0,-105.188	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.639	0/1:102:41,61:41:1460:61:2176:-165.393,0,-100.978	0/1:79:49,30:49:1748:30:1071:-72.9202,0,-133.823	0/1:41:26,15:26:909:15:540:-36.5943,0,-69.7812	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:42:20,22:20:703:22:770:-56.9757,0,-50.9503	0/0:205:205,0:205:7308:0:0:0,-61.7111,-657.775	0/0:218:218,0:218:7775:0:0:0,-65.6245,-699.415	0/0:121:121,0:121:4302:0:0:0,-36.4246,-387.353	0/1:152:68,84:68:2432:84:2986:-223.209,0,-173.377	0/1:41:23,18:23:820:18:637:-45.3146,0,-61.7803	0/0:117:117,0:117:4163:0:0:0,-35.2205,-374.855	0/1:243:115,128:115:4097:128:4571:-338.346,0,-295.576	0/0:285:285,0:285:10131:0:0:0,-85.7935,-911.724	0/1:49:27,22:27:964:22:788:-56.3695,0,-72.3264	0/0:253:253,0:253:8999:0:0:0,-76.1606,-809.892	0/1:117:64,53:64:2284:53:1885:-134.701,0,-170.602	0/0:92:91,1:91:3225:1:36:0,-24.0965,-286.875	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:26:9,17:9:324:17:608:-47.2252,0,-21.6791	.:.:.:.:.:.:.:.	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:248:248,0:248:8836:0:0:0,-74.6554,-795.166	0/1:106:54,52:54:1940:52:1853:-135.139,0,-142.967	0/1:39:19,20:19:684:20:716:-53.0275,0,-50.1502	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:113:55,58:55:1972:58:2052:-150.932,0,-143.738	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:122:122,0:122:4388:0:0:0,-36.7257,-395.091	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/0:141:141,0:141:5048:0:0:0,-42.4452,-454.463	0/1:104:47,57:47:1688:57:2048:-153.276,0,-120.9	0/0:129:129,0:129:4612:0:0:0,-38.8329,-415.245	0/0:79:79,0:79:2812:0:0:0,-23.7814,-253.321	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	0/1:129:77,52:77:2764:52:1868:-129.564,0,-210.168	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:126:57,69:57:2048:69:2468:-184.441,0,-146.662	0/1:95:48,47:48:1720:47:1669:-121.897,0,-126.487	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:211:210,0:210:7512:0:0:0,-63.2163,-675.634	0/1:51:23,28:23:828:28:1004:-75.3215,0,-59.4916	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/1:94:43,51:43:1527:51:1832:-136.864,0,-109.426	0/1:139:58,81:58:2088:81:2895:-218.834,0,-146.346	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:153:153,0:153:5460:0:0:0,-46.0576,-491.53	0/0:161:161,0:161:5734:0:0:0,-48.4658,-516.176	0/0:37:37,0:37:1306:0:0:0,-11.1381,-117.84	0/0:94:94,0:94:3340:0:0:0,-28.2968,-300.807	0/0:230:227,3:227:8083:3:108:0,-59.1665,-716.846	0/1:243:80,163:80:2864:163:5818:-450.527,0,-184.655	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.864	0/1:62:26,35:26:924:35:1250:-94.2061,0,-64.8624	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.343	0/1:20:5,15:5:180:15:520:-41.1009,0,-10.5315	0/0:186:186,0:186:6643:0:0:0,-55.9916,-597.938	0/1:87:43,44:43:1527:44:1572:-115.534,0,-111.525	0/1:190:90,100:90:3216:100:3573:-264.501,0,-232.218	0/1:160:76,84:76:2684:84:2997:-221.791,0,-193.638	0/1:67:33,34:33:1165:34:1209:-88.9453,0,-84.986	0/0:80:80,0:80:2821:0:0:0,-24.0824,-254.13	0/1:14:10,4:10:356:4:144:-9.0992,0,-28.1668	0/1:73:26,47:26:932:47:1670:-128.556,0,-62.2237	0/0:121:121,0:121:4298:0:0:0,-36.4246,-386.988	0/0:192:192,0:192:6876:0:0:0,-57.7978,-618.905	0/1:76:34,42:34:1215:42:1482:-110.795,0,-86.7775	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/1:74:38,36:38:1364:36:1296:-94.6607,0,-100.782	0/0:197:195,2:195:6991:2:72:0,-52.4662,-622.409	0/1:28:11,17:11:396:17:608:-46.3357,0,-27.5457	0/1:101:49,52:49:1748:52:1868:-137.987,0,-127.2	0/1:120:47,73:47:1650:73:2602:-198.276,0,-112.663	0/1:56:34,22:34:1216:22:776:-53.286,0,-92.8889	0/1:154:87,67:87:3087:67:2378:-167.903,0,-231.696	0/1:108:41,67:41:1468:67:2388:-182.644,0,-99.9049	0/0:126:126,0:126:4495:0:0:0,-37.9298,-404.72	0/0:156:154,2:154:5474:2:72:0,-40.124,-485.946
chr03	28933306	.	A	G	127610	PASS	AB=0.46463;ABP=43.5631;AC=134;AF=0.712766;AN=188;AO=4845;CIGAR=1X;DP=6859;DPB=6859;DPRA=24.5735;EPP=10506.4;EPPR=4369.84;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.98;MQMR=59.9935;NS=94;NUMALT=1;ODDS=1.96785;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171447;QR=71590;RO=2011;RPL=2398;RPP=4.0864;RPPR=19.3466;RPR=2447;RUN=1;SAF=2400;SAP=3.91788;SAR=2445;SRF=944;SRP=19.3466;SRR=1067;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	0/1:71:31,40:31:1097:40:1425:-107.173,0,-77.6649	0/1:79:30,49:30:1076:49:1713:-130.667,0,-73.3715	1/1:83:0,83:0:0:83:2909:-262.043,-24.9855,0	0/1:45:28,17:28:1004:17:608:-41.5057,0,-77.1295	0/1:37:21,16:21:756:16:567:-40.2226,0,-57.2291	0/1:49:23,26:23:824:26:913:-67.7346,0,-59.7328	0/1:87:52,35:52:1860:35:1256:-87.1557,0,-141.49	0/1:75:45,30:45:1603:30:1067:-73.764,0,-121.982	0/1:42:17,25:17:604:25:887:-67.5049,0,-42.0473	0/1:115:64,51:64:2295:51:1770:-124.958,0,-172.192	0/1:165:77,88:77:2736:88:3087:-228.388,0,-196.811	0/1:141:73,68:73:2598:68:2397:-173.539,0,-191.623	1/1:146:0,146:0:0:146:5111:-460.138,-43.9504,0	0/1:124:65,59:65:2318:59:2069:-149.15,0,-171.551	0/1:103:51,52:51:1815:52:1845:-135.323,0,-132.625	0/1:120:61,59:61:2154:59:2079:-151.255,0,-158	1/1:77:0,77:0:0:77:2714:-244.502,-23.1793,0	0/1:85:42,43:42:1471:43:1506:-110.244,0,-107.093	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	1/1:79:0,79:0:0:79:2798:-252.061,-23.7814,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:40:14,26:14:500:26:922:-71.2323,0,-33.295	0/1:51:24,27:24:864:27:964:-71.7243,0,-62.7016	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	0/1:133:71,62:71:2552:62:2220:-160.027,0,-189.893	1/1:125:0,125:0:0:125:4454:-401.031,-37.6288,0	0/1:69:41,28:41:1460:28:987:-68.372,0,-110.925	1/1:93:0,93:0:0:93:3307:-297.847,-27.9958,0	0/1:41:29,12:29:1044:12:421:-25.8812,0,-81.9326	1/1:48:0,48:0:0:48:1707:-153.914,-14.4494,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:308:0,308:0:0:308:10870:-978.211,-92.7172,0	0/1:29:13,16:13:459:16:571:-42.9933,0,-32.9142	0/1:97:60,37:60:2136:37:1303:-88.3707,0,-163.308	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:70:40,30:40:1431:30:1038:-72.653,0,-108.015	1/1:67:0,67:0:0:67:2360:-212.655,-20.169,0	1/1:59:1,58:1:36:58:2075:-183.421,-14.1625,0	1/1:107:0,106:0:0:106:3705:-333.403,-31.9092,0	1/1:119:0,119:0:0:119:4224:-380.341,-35.8226,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:53:26,27:26:932:27:952:-70.0387,0,-68.2443	1/1:64:0,64:0:0:64:2273:-204.773,-19.2659,0	1/1:43:0,43:0:0:43:1518:-136.912,-12.9443,0	1/1:55:0,55:0:0:55:1940:-174.875,-16.5567,0	0/1:61:35,26:35:1228:26:927:-65.3845,0,-92.4583	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:67:33,34:33:1180:34:1199:-88.0458,0,-86.339	0/1:16:9,7:9:316:7:252:-18.2125,0,-23.9624	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:65:2,63:2:72:63:2238:-194.846,-12.7302,0	0/1:18:12,6:12:424:6:207:-13.5484,0,-33.0779	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:49:21,28:21:739:28:978:-73.5782,0,-52.0819	0/1:152:80,71:80:2860:71:2527:-181.866,0,-211.822	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:69:1,68:1:36:68:2436:-215.897,-17.1728,0	1/1:46:0,46:0:0:46:1610:-145.184,-13.8474,0	1/1:30:0,30:0:0:30:1053:-95.0786,-9.0309,0	1/1:95:0,95:0:0:95:3371:-303.606,-28.5979,0	0/1:67:46,21:46:1652:21:748:-47.4763,0,-128.799	1/1:70:0,70:0:0:70:2431:-219.04,-21.0721,0	0/1:41:15,26:15:536:26:922:-70.9549,0,-36.2326	1/1:142:0,142:0:0:142:5052:-454.826,-42.7463,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:32:0,32:0:0:32:1133:-102.277,-9.63296,0	0/1:58:32,26:32:1139:26:917:-65.3857,0,-85.3586	0/1:124:61,63:61:2119:63:2252:-165.615,0,-153.644	0/1:79:45,34:45:1599:34:1211:-85.5141,0,-120.418	0/1:63:36,27:36:1296:27:972:-68.833,0,-97.979	1/1:66:0,66:0:0:66:2359:-212.568,-19.868,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:53:31,21:31:1112:21:756:-52.3538,0,-84.378	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:88:0,88:0:0:88:3134:-282.286,-26.4906,0	0/1:114:64,50:64:2275:50:1769:-125.173,0,-170.695	1/1:127:1,126:1:36:126:4466:-398.512,-34.6325,0	0/1:142:68,74:68:2429:74:2618:-193.12,0,-176.118	1/1:255:7,248:7:248:248:8758:-765.552,-54.0985,0	0/1:56:30,26:30:1072:26:921:-66.3475,0,-79.9348	0/1:113:67,46:67:2374:46:1610:-111.169,0,-179.901	0/1:122:57,65:57:2010:65:2274:-168.196,0,-144.444	0/1:88:57,31:57:2015:31:1103:-73.0892,0,-155.132	0/1:124:69,55:69:2464:55:1912:-135.024,0,-184.687	0/1:134:94,40:94:3330:40:1395:-85.5055,0,-259.581	1/1:52:0,52:0:0:52:1831:-165.069,-15.6536,0	1/1:231:0,231:0:0:231:8227:-740.408,-69.5379,0
chr03	28933771	.	CG	AG,AT	179563	PASS	AB=0.459665,0.536536;ABP=66.2479,54.8971;AC=136,52;AF=0.723404,0.276596;AN=188;AO=5915,2410;CIGAR=1X1M,2X;DP=8353;DPB=8353;DPRA=0,1.00969;EPP=12665.5,5184.27;EPPR=9.52472;GTI=0;LEN=1,2;MEANALT=1.85106,2.24138;MQM=59.9711,59.1697;MQMR=60;NS=94;NUMALT=2;ODDS=1.22262;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=212005,85361;QR=108;RO=3;RPL=21,6;RPP=12665.5,5184.27;RPPR=9.52472;RPR=5894,2404;RUN=1,1;SAF=5915,2410;SAP=12847.3,5236.26;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:59:0,30,29:0:0:30,29:1060,1040:-171.509,-85.1847,-76.1538,-86.6798,0,-77.9499	1/2:92:0,43,49:0:0:43,49:1548,1747:-269.063,-142.752,-129.808,-126.669,0,-111.918	1/2:153:0,66,87:0:0:66,87:2356,3113:-446.061,-253.987,-234.119,-192.431,0,-166.241	1/1:203:0,201,0:0:0:201,0:7202,0:-647.928,-60.507,0,-647.928,-60.507,-647.928	1/2:81:0,53,28:0:0:53,28:1896,981:-234.721,-80.111,-64.1564,-154.963,0,-146.534	1/2:61:0,25,32:0:0:25,32:896,1138:-165.277,-92.198,-84.6723,-73.0965,0,-63.4636	1/2:83:0,37,46:0:0:37,46:1307,1609:-237.688,-131.248,-120.11,-106.792,0,-92.9444	1/2:211:0,99,112:0:0:99,112:3544,3986:-614.163,-325.153,-295.351,-289.367,0,-255.651	1/2:135:0,68,66:0:0:68,66:2440,2337:-389.053,-190.023,-169.553,-199.153,0,-179.285	1/2:56:0,31,25:0:0:31,25:1112,889:-163.482,-72.7798,-63.4479,-91.0594,0,-83.5337	1/2:66:0,32,34:0:0:32,34:1148,1213:-192.806,-99.1669,-89.534,-93.9969,0,-83.7619	1/2:157:0,70,86:0:0:70,86:2516,3060:-454.348,-249.086,-228.014,-205.26,0,-179.371	1/2:102:0,49,51:0:0:49,51:1756,1801:-289.891,-146.672,-131.921,-143.267,0,-127.914	1/1:79:0,77,0:0:0:77,0:2764,0:-248.641,-23.1793,0,-248.641,-23.1793,-248.641	1/2:101:0,51,50:0:0:51,50:1836,1783:-295.488,-145.678,-130.326,-150.168,0,-135.117	1/2:82:0,37,43:0:0:37,43:1328,1533:-233.29,-124.963,-113.824,-108.376,0,-95.4322	1/2:49:0,17,32:0:0:17,32:612,1100:-139.609,-89.667,-84.5495,-50.2959,0,-40.663	1/1:40:0,40,0:0:0:40,0:1436,0:-129.538,-12.0412,0,-129.538,-12.0412,-129.538	1/2:58:0,23,35:0:0:23,35:828,1258:-170.528,-102.967,-96.0433,-67.9204,0,-57.3844	1/1:109:0,109,0:0:0:109,0:3901,0:-351.283,-32.8123,0,-351.283,-32.8123,-351.283	1/1:160:0,160,0:0:0:160,0:5696,0:-512.758,-48.1648,0,-512.758,-48.1648,-512.758	1/1:51:0,51,0:0:0:51,0:1801,0:-162.37,-15.3525,0,-162.37,-15.3525,-162.37	1/2:126:0,37,89:0:0:37,89:1323,3153:-364.521,-257.142,-246.003,-107.734,0,-80.9428	1/2:87:0,25,62:0:0:25,62:900,2182:-251.371,-177.933,-170.407,-73.7953,0,-55.1314	1/1:57:0,57,0:0:0:57,0:2036,0:-183.512,-17.1587,0,-183.512,-17.1587,-183.512	1/2:225:0,111,113:0:0:111,113:3978,4016:-651.317,-326.878,-293.464,-324.436,0,-290.419	1/1:202:0,201,1:0:0:201,1:7197,36:-647.42,-60.507,0,-644.482,-57.2098,-644.181	1/2:40:0,20,20:0:0:20,20:720,716:-117.496,-58.7471,-52.7265,-59.1082,0,-53.0876	1/1:271:0,271,0:0:0:271,0:9723,0:-875.015,-81.5791,0,-875.015,-81.5791,-875.015	1/2:113:0,53,60:0:0:53,60:1896,2116:-326.807,-172.199,-156.245,-154.963,0,-136.901	1/1:97:0,96,0:0:0:96,0:3440,0:-309.453,-28.8989,0,-309.453,-28.8989,-309.453	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:12:0,2,10:0:0:2,10:72,349:-34.6111,-28.7344,-28.1324,-6.23466,0,-3.22436	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:207:0,206,0:0:0:206,0:7386,0:-664.396,-62.0122,0,-664.396,-62.0122,-664.396	1/2:49:0,19,30:0:0:19,30:684,1067:-143.121,-87.3079,-81.5883,-56.1708,0,-47.1399	1/2:59:0,30,29:0:0:30,29:1080,1040:-173.178,-85.0543,-76.0234,-88.4823,0,-79.7525	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:139:0,63,76:0:0:63,76:2233,2688:-401.197,-219.284,-200.319,-182.267,0,-159.389	1/1:40:0,40,0:0:0:40,0:1438,0:-129.718,-12.0412,0,-129.718,-12.0412,-129.718	1/1:108:0,108,0:0:0:108,0:3876,0:-349.031,-32.5112,0,-349.031,-32.5112,-349.031	1/1:75:0,75,0:0:0:75,0:2696,0:-242.884,-22.5773,0,-242.884,-22.5773,-242.884	1/1:86:0,86,0:0:0:86,0:3096,0:-278.866,-25.8886,0,-278.866,-25.8886,-278.866	1/1:50:0,50,0:0:0:50,0:1796,0:-161.922,-15.0515,0,-161.922,-15.0515,-161.922	1/2:107:0,50,57:0:0:50,57:1792,2030:-311.81,-165.656,-150.605,-146.511,0,-129.352	1/1:105:0,104,0:0:0:104,0:3719,0:-334.55,-31.3071,0,-334.55,-31.3071,-334.55	1/1:54:0,54,0:0:0:54,0:1944,0:-175.236,-16.2556,0,-175.236,-16.2556,-175.236	1/1:98:0,98,0:0:0:98,0:3528,0:-317.728,-29.5009,0,-317.728,-29.5009,-317.728	1/2:71:0,29,41:0:0:29,41:1044,1474:-204.775,-119.589,-110.859,-85.1851,0,-72.8429	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:105:0,49,56:0:0:49,56:1752,1991:-305.304,-162.448,-147.697,-143.212,0,-126.355	1/2:67:0,32,35:0:0:32,35:1137,1238:-193.725,-101.075,-91.4422,-93.004,0,-82.468	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:107:0,107,0:0:0:107,0:3840,0:-345.795,-32.2102,0,-345.795,-32.2102,-345.795	1/2:60:0,24,36:0:0:24,36:860,1286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chr03	28933801	.	C	T	108135	PASS	AB=0.521288;ABP=38.3279;AC=53;AF=0.281915;AN=188;AO=4696;CIGAR=1X;DP=17457;DPB=17457;DPRA=0.950952;EPP=10191.6;EPPR=27635;GTI=1;LEN=1;MEANALT=1.04918;MQM=59.3901;MQMR=59.9821;NS=94;NUMALT=1;ODDS=6.97687;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167324;QR=449456;RO=12753;RPL=2317;RPP=4.7878;RPPR=216.218;RPR=2379;RUN=1;SAF=2316;SAP=4.90433;SAR=2380;SRF=5812;SRP=220.045;SRR=6941;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:163:81,82:81:2878:82:2892:-211.44,0,-210.189	0/1:198:99,99:99:3506:99:3532:-258.256,0,-256.148	0/1:290:136,154:136:4823:154:5511:-408.495,0,-346.928	0/0:465:464,0:464:16381:0:0:0,-139.678,-1473.61	0/1:200:106,94:106:3726:94:3353:-241.714,0,-275.337	0/1:80:41,39:41:1472:39:1396:-101.486,0,-108.694	0/1:138:62,76:62:2200:76:2702:-201.881,0,-156.724	0/1:387:194,193:194:6865:193:6848:-499.718,0,-501.424	0/1:342:154,188:154:5430:188:6670:-497.017,0,-385.88	0/1:204:105,99:105:3718:99:3520:-255.574,0,-273.406	0/1:105:50,55:50:1748:55:1976:-146.459,0,-125.993	0/1:285:146,139:146:5063:139:4955:-359.884,0,-370.035	0/1:184:91,93:91:3187:93:3308:-242.49,0,-231.664	0/0:122:122,0:122:4206:0:0:0,-36.7257,-378.729	0/1:175:86,89:86:2956:89:3196:-235.158,0,-213.597	0/1:147:73,74:73:2513:74:2634:-192.996,0,-182.169	0/1:88:40,48:40:1392:48:1707:-127.423,0,-99.0836	0/0:83:83,0:83:2897:0:0:0,-24.9855,-260.863	0/1:75:33,42:33:1154:42:1487:-111.547,0,-81.5875	0/0:272:271,1:271:9595:1:36:0,-78.2819,-859.911	0/0:427:427,0:427:15097:0:0:0,-128.54,-1358.47	0/0:131:131,0:131:4654:0:0:0,-39.4349,-419.025	0/1:237:84,153:84:2979:153:5460:-420.125,0,-196.893	0/1:152:63,89:63:2242:89:3152:-238.093,0,-156.286	0/0:186:186,0:186:6597:0:0:0,-55.9916,-593.814	0/1:467:221,246:221:7850:246:8776:-648.416,0,-565.951	0/0:464:461,3:461:16331:3:108:0,-129.603,-1459.4	0/1:76:39,37:39:1335:37:1323:-96.4926,0,-97.566	0/0:546:546,0:546:19279:0:0:0,-164.362,-1734.68	0/1:192:96,96:96:3366:96:3427:-250.379,0,-245.355	0/0:202:201,0:201:7080:0:0:0,-60.507,-636.908	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:31:10,21:10:360:21:756:-59.0353,0,-23.4124	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:375:375,0:375:13103:0:0:0,-112.886,-1179.08	0/1:127:55,72:55:1959:72:2584:-194.51,0,-138.354	0/1:105:62,43:62:2144:43:1523:-105.658,0,-161.619	0/1:10:9,1:9:298:1:36:-0.587975,0,-24.1313	0/1:308:164,144:164:5819:144:5141:-370.107,0,-431.109	0/0:68:68,0:68:2363:0:0:0,-20.47,-212.928	0/0:255:255,0:255:8986:0:0:0,-76.7626,-808.721	0/0:134:134,0:134:4682:0:0:0,-40.338,-421.547	0/0:138:138,0:138:4815:0:0:0,-41.5421,-433.514	0/0:127:127,0:127:4490:0:0:0,-38.2308,-404.269	0/1:260:125,135:125:4422:135:4811:-354.526,0,-319.886	0/0:324:324,0:324:11493:0:0:0,-97.5337,-1034.25	0/0:165:165,0:165:5862:0:0:0,-49.6699,-527.696	0/0:205:205,0:205:7256:0:0:0,-61.7111,-653.101	0/1:226:91,135:91:3200:135:4799:-363.368,0,-220.189	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:191:88,103:88:3120:103:3676:-273.416,0,-223.529	0/1:111:56,55:56:1964:55:1950:-142.301,0,-143.616	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/0:262:262,0:262:9287:0:0:0,-78.8699,-835.798	0/1:155:71,84:71:2524:84:2976:-221.374,0,-180.722	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:25:9,16:9:320:16:576:-44.6432,0,-21.6166	0/1:239:116,121:116:4111:121:4330:-317.728,0,-298.472	0/1:160:89,71:89:3098:71:2521:-178.91,0,-230.885	0/1:17:8,9:8:279:9:324:-24.3883,0,-20.33	0/0:239:238,1:238:8436:1:36:0,-68.3489,-755.653	0/0:261:255,6:255:9020:6:216:0,-58.7783,-791.996	0/0:138:136,2:136:4781:2:72:0,-34.7054,-423.61	0/0:210:210,0:210:7396:0:0:0,-63.2163,-665.683	0/0:268:265,3:265:9381:3:108:0,-70.6009,-834.189	0/1:261:80,181:80:2831:181:6462:-501.512,0,-176.459	0/0:125:125,0:125:4349:0:0:0,-37.6287,-391.591	0/1:107:51,56:51:1812:56:1991:-147.113,0,-131.143	0/0:116:116,0:116:3981:0:0:0,-34.9195,-358.473	0/1:32:22,10:22:776:10:360:-23.1113,0,-60.5292	0/0:169:169,0:169:5954:0:0:0,-50.8741,-535.937	0/1:138:69,69:69:2442:69:2450:-179.115,0,-178.493	0/1:397:203,193:203:7182:193:6872:-498.683,0,-526.873	0/1:218:112,106:112:3989:106:3795:-276.087,0,-293.575	0/1:340:189,151:189:6670:151:5396:-383.109,0,-498.033	0/0:210:209,1:209:7378:1:36:0,-59.618,-660.477	0/1:20:10,10:10:352:10:360:-26.7016,0,-25.9976	0/1:247:107,140:107:3818:140:4997:-375.445,0,-269.463	0/0:311:311,0:311:10953:0:0:0,-93.6203,-985.68	0/0:488:487,0:487:17305:0:0:0,-146.602,-1556.82	0/1:136:63,73:63:2193:73:2581:-191.57,0,-156.691	0/0:152:152,0:152:5334:0:0:0,-45.7566,-480.147	0/1:105:53,50:53:1841:50:1784:-129.439,0,-134.6	0/0:303:301,2:301:10517:2:72:0,-84.3754,-939.636	0/1:63:22,41:22:763:41:1472:-113.763,0,-50.0237	0/1:161:81,80:81:2765:80:2829:-206.365,0,-200.571	0/1:158:86,72:86:3008:72:2549:-182.036,0,-223.391	0/1:111:47,64:47:1647:64:2296:-173.437,0,-115.103	0/1:160:81,79:81:2817:79:2797:-203.368,0,-205.608	0/1:160:57,103:57:1951:103:3681:-283.292,0,-127.696	0/0:170:170,0:170:6047:0:0:0,-51.1751,-544.338	0/0:271:271,0:271:9499:0:0:0,-81.5791,-854.114
chr03	28933810	.	CGC	CGT,TGT	397262	PASS	AB=0.6081,0.388326;ABP=684.685,730.499;AC=135,53;AF=0.718085,0.281915;AN=188;AO=12214,2622;CIGAR=2M1X,1X1M1X;DP=14883;DPB=14896.7;DPRA=0,0.784022;EPP=132.066,3795.72;EPPR=14.7363;GTI=6;LEN=1,3;MEANALT=1.93617,2.3;MQM=59.9836,59.3368;MQMR=60;NS=94;NUMALT=2;ODDS=0.446136;PAIRED=0,0;PAIREDR=0;PAO=0,40;PQA=0,1319;PQR=0;PRO=0;QA=432188,91318;QR=535;RO=15;RPL=12114,2569;RPP=25663.9,5245.56;RPPR=35.5824;RPR=100,53;RUN=1,1;SAF=5581,188;SAP=199.766,4180.75;SAR=6633,2434;SRF=3;SRP=14.7363;SRR=12;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:134:0,78,56:0:0:78,56:2757,1940:-382.19,-157.648,-134.168,-224.531,0,-207.674	1/2:144:0,94,50:0:0:94,50:3330,1721:-410.831,-139.558,-111.261,-271.273,0,-256.222	1/2:201:0,131,70:0:0:131,70:4634,2454:-577.454,-200.016,-160.581,-377.79,0,-356.718	1/1:447:0,446,0:0:0:446,0:15805,0:-1421.8,-134.259,0,-1421.8,-134.259,-1421.8	1/2:174:0,105,69:0:0:105,69:3751,2432:-503.792,-197.965,-166.356,-305.822,0,-285.051	1/2:49:0,38,11:0:0:38,11:1352,394:-142.461,-32.2678,-20.8287,-110.327,0,-107.016	1/2:92:0,59,33:0:0:59,33:2092,1174:-266.468,-96.0334,-78.2726,-170.789,0,-160.855	1/2:272:0,187,85:0:0:187,85:6656,2931:-780.53,-238.047,-181.754,-542.545,0,-516.957	1/2:273:0,147,126:0:0:147,126:5204,4384:-780.228,-356.328,-312.076,-423.891,0,-385.961	1/2:172:0,96,75:0:0:96,75:3383,2614:-488.006,-212.572,-183.674,-275.424,0,-252.847	1/2:74:0,50,24:0:0:50,24:1749,850:-211.881,-69.5927,-54.5412,-142.64,0,-135.416	1/2:199:1,138,60:1:36:138,60:4916,2104:-568.637,-168.238,-129.633,-397.768,0,-382.643	1/2:131:0,86,44:0:0:86,44:3068,1533:-374.763,-124.654,-98.7652,-250.102,0,-236.857	1/1:125:0,125,0:0:0:125,0:4453,0:-400.941,-37.6288,0,-400.941,-37.6288,-400.941	1/2:124:0,83,40:0:0:83,40:2954,1415:-355.997,-115.243,-90.2579,-240.748,0,-228.707	1/2:100:0,71,28:0:0:71,28:2507,992:-284.973,-80.8157,-59.4426,-204.17,0,-195.741	1/2:60:0,40,19:0:0:40,19:1424,650:-168.809,-52.7404,-40.6992,-116.057,0,-110.337	1/1:79:0,79,0:0:0:79,0:2809,0:-253.045,-23.7814,0,-253.045,-23.7814,-253.045	1/2:42:0,34,8:0:0:34,8:1208,280:-121.211,-22.7718,-12.5368,-98.4314,0,-96.0231	1/1:252:2,249,1:2:70:249,1:8802,36:-785.525,-69.2677,0,-783.189,-72.0157,-788.584	1/1:410:1,409,0:1:36:409,0:14418,0:-1293.79,-119.824,0,-1294.09,-123.121,-1297.03	1/1:124:0,124,0:0:0:124,0:4381,0:-394.465,-37.3277,0,-394.465,-37.3277,-394.465	1/2:147:0,79,67:0:0:79,67:2776,2298:-412.214,-186.534,-162.752,-225.667,0,-205.498	1/2:91:0,59,32:0:0:59,32:2091,1113:-261.157,-90.8083,-73.0476,-170.699,0,-161.066	1/1:179:0,179,0:0:0:179,0:6373,0:-573.663,-53.8844,0,-573.663,-53.8844,-573.663	1/2:457:1,203,252:1:36:203,252:7144,8779:-1291.39,-710.127,-651.955,-578.673,0,-505.751	1/1:447:0,445,1:0:0:445,1:15699,36:-1412.27,-133.958,0,-1409.33,-131.021,-1409.03	1/2:54:0,36,18:0:0:36,18:1266,619:-153.31,-50.2534,-39.4163,-103.044,0,-97.6251	1/1:521:1,520,0:1:36:520,0:18425,0:-1654.26,-153.238,0,-1654.56,-156.536,-1657.5	1/2:134:0,93,41:0:0:93,41:3291,1401:-382.083,-114.014,-86.0184,-268.414,0,-256.072	1/1:199:1,198,0:1:36:198,0:7006,0:-626.925,-56.3067,0,-627.226,-59.6039,-630.164	1/1:23:0,23,0:0:0:23,0:820,0:-74.1225,-6.92369,0,-74.1225,-6.92369,-74.1225	1/2:23:0,11,12:0:0:11,12:388,430:-67.0185,-35.4277,-32.1164,-31.946,0,-28.3337	1/1:20:0,20,0:0:0:20,0:696,0:-62.9624,-6.0206,0,-62.9624,-6.0206,-62.9624	1/1:16:0,16,0:0:0:16,0:553,0:-50.094,-4.81648,0,-50.094,-4.81648,-50.094	1/1:16:0,16,0:0:0:16,0:568,0:-51.4519,-4.81648,0,-51.4519,-4.81648,-51.4519	1/1:369:1,368,0:1:36:368,0:13027,0:-1168.66,-107.482,0,-1168.96,-110.779,-1171.9	1/2:90:0,49,41:0:0:49,41:1712,1441:-256.898,-117.637,-102.886,-139.612,0,-127.27	1/2:75:0,58,17:0:0:58,17:2084,602:-219.092,-49.0703,-31.6106,-170.063,0,-164.945	1/2:9:0,8,1:0:0:8,1:288,36:-26.7966,-3.29724,-0.889005,-23.8592,0,-23.5581	1/2:223:0,153,70:0:0:153,70:5416,2435:-639.485,-198.322,-152.264,-441.513,0,-420.441	1/1:66:0,66,0:0:0:66,0:2338,0:-210.679,-19.868,0,-210.679,-19.868,-210.679	1/1:244:3,241,0:3:108:241,0:8497,0:-754.662,-63.3762,0,-755.565,-72.5482,-764.378	1/1:131:0,131,0:0:0:131,0:4657,0:-419.293,-39.4349,0,-419.293,-39.4349,-419.293	1/1:134:0,133,0:0:0:133,0:4661,0:-419.297,-40.037,0,-419.297,-40.037,-419.297	1/1:125:0,122,2:0:0:122,2:4277,61:-384.786,-36.7257,0,-379.901,-31.876,-379.299	1/2:205:0,125,78:0:0:125,78:4419,2715:-580.641,-220.734,-183.105,-359.911,0,-336.431	1/1:319:0,318,1:0:0:318,1:11292,28:-1015.89,-95.7275,0,-1013.67,-93.2288,-1013.37	1/1:153:0,150,0:0:0:150,0:5363,0:-482.514,-45.1545,0,-482.514,-45.1545,-482.514	1/1:196:0,195,0:0:0:195,0:6861,0:-617.203,-58.7009,0,-617.203,-58.7009,-617.203	1/2:222:0,88,133:0:0:88,133:3105,4637:-629.426,-376.591,-350.1,-252.905,0,-212.868	1/1:10:0,10,0:0:0:10,0:351,0:-31.9267,-3.0103,0,-31.9267,-3.0103,-31.9267	1/2:140:0,87,53:0:0:87,53:3089,1897:-406.684,-154.993,-128.803,-252.048,0,-236.094	1/2:107:0,52,55:0:0:52,55:1864,1916:-307.723,-155.691,-140.037,-152.026,0,-135.469	1/2:7:0,4,3:0:0:4,3:136,100:-19.4621,-8.42677,-7.22265,-11.3714,0,-10.4683	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chr03	28960480	.	T	C	314868	PASS	AB=0.523835;ABP=30.9588;AC=142;AF=0.755319;AN=188;AO=14455;CIGAR=1X;DP=17224;DPB=17224;DPRA=0;EPP=31391.6;EPPR=5994.1;GTI=1;LEN=1;MEANALT=1.09574;MQM=59.6899;MQMR=59.9253;NS=94;NUMALT=1;ODDS=7.17862;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=518015;QR=98586;RO=2759;RPL=0;RPP=31391.6;RPPR=5994.1;RPR=14455;RUN=1;SAF=14455;SAP=31391.6;SAR=0;SRF=2759;SRP=5994.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:27,28:27:949:28:1004:-74.1192,0,-69.1661	0/1:223:127,96:127:4560:96:3444:-243.021,0,-343.411	0/1:107:49,58:49:1760:58:2080:-155.238,0,-126.474	1/1:216:0,216:0:0:216:7735:-695.881,-65.0225,0	0/1:38:18,20:18:633:20:720:-53.6896,0,-45.8559	0/1:49:30,19:30:1057:19:680:-46.7672,0,-80.6885	0/1:131:80,51:80:2848:51:1817:-124.367,0,-217.124	0/1:151:74,77:74:2644:77:2756:-202.62,0,-192.751	0/1:111:51,59:51:1832:59:2120:-157.695,0,-131.795	0/1:54:35,19:35:1230:19:680:-45.2735,0,-94.658	0/1:200:33,167:33:1176:167:6004:-480.162,0,-45.9418	0/1:82:40,42:40:1417:42:1512:-111.682,0,-103.141	0/1:87:39,48:39:1377:48:1709:-127.871,0,-98.0371	1/1:59:0,59:0:0:59:2116:-190.696,-17.7608,0	0/1:60:35,25:35:1260:25:900:-63.251,0,-95.6437	0/1:115:72,42:72:2554:42:1508:-101.058,0,-195.43	0/1:59:31,28:31:1101:28:1000:-72.5464,0,-81.6376	1/1:68:0,68:0:0:68:2444:-220.19,-20.47,0	0/1:130:29,101:29:1036:101:3616:-286.5,0,-54.42	1/1:223:2,220:2:72:220:7873:-701.74,-60.3518,0	1/1:126:0,126:0:0:126:4520:-406.94,-37.9298,0	1/1:158:1,157:1:36:157:5592:-499.757,-43.9645,0	0/1:59:40,19:40:1432:19:684:-44.1272,0,-111.417	0/1:107:47,60:47:1676:60:2148:-161.373,0,-118.917	1/1:74:0,74:0:0:74:2648:-238.565,-22.2762,0	0/1:303:161,142:161:5753:142:5073:-365.486,0,-426.673	1/1:234:0,234:0:0:234:8356:-751.948,-70.441,0	0/1:40:22,18:22:792:18:648:-46.6107,0,-59.5645	1/1:310:0,310:0:0:310:11112:-999.933,-93.3193,0	0/1:175:91,84:91:3242:84:3012:-218.602,0,-239.318	1/1:132:0,132:0:0:132:4752:-427.83,-39.736,0	1/1:760:1,758:1:36:758:27137:-2437.12,-225.243,0	1/1:351:8,343:8:288:343:12308:-1081.17,-79.3941,0	1/1:679:2,677:2:72:677:24288:-2178.08,-197.563,0	1/1:1000:0,999:0:0:999:35786:-3217.57,-300.729,0	1/1:805:1,804:1:36:804:28811:-2585.52,-238.731,0	1/1:231:0,231:0:0:231:8294:-746.42,-69.5379,0	0/1:256:143,113:143:5105:113:4044:-287.075,0,-382.529	0/1:274:46,228:46:1656:228:8173:-652.744,0,-66.8462	1/1:187:3,184:3:108:184:6581:-582.038,-46.2174,0	0/1:136:70,66:70:2497:66:2372:-172.785,0,-184.041	1/1:240:0,240:0:0:240:8605:-774.375,-72.2472,0	1/1:143:0,143:0:0:143:5108:-459.858,-43.0473,0	1/1:59:0,59:0:0:59:2116:-190.704,-17.7608,0	1/1:54:0,54:0:0:54:1940:-174.84,-16.2556,0	1/1:85:0,85:0:0:85:3052:-274.907,-25.5876,0	0/1:137:83,54:83:2958:54:1944:-133.987,0,-225.209	1/1:116:0,116:0:0:116:4164:-374.908,-34.9195,0	1/1:129:0,129:0:0:129:4613:-415.326,-38.8329,0	1/1:203:0,203:0:0:203:7269:-654.095,-61.1091,0	0/1:149:92,57:92:3273:57:2052:-140.074,0,-249.935	1/1:650:0,650:0:0:650:23322:-2098.24,-195.67,0	0/1:127:72,55:72:2569:55:1972:-138.459,0,-193.227	0/1:54:25,29:25:900:29:1036:-77.2983,0,-65.0654	1/1:395:5,390:5:180:390:13969:-1240.21,-102.355,0	1/1:123:0,122:0:0:122:4376:-393.644,-36.7257,0	0/1:35:16,19:16:572:19:676:-50.5445,0,-41.2774	1/1:488:0,486:0:0:486:17369:-1562.05,-146.301,0	1/1:433:13,420:13:468:420:15042:-1310.76,-87.8863,0	0/1:76:46,30:46:1641:30:1080:-74.635,0,-124.955	0/1:127:72,55:72:2592:55:1976:-139.847,0,-195.297	1/1:188:2,186:2:72:186:6649:-591.629,-49.7569,0	1/1:136:0,136:0:0:136:4880:-439.323,-40.9401,0	1/1:200:0,200:0:0:200:7176:-645.851,-60.206,0	1/1:48:0,48:0:0:48:1728:-155.801,-14.4494,0	1/1:95:1,94:1:36:94:3354:-298.442,-24.9996,0	1/1:124:1,123:1:36:123:4393:-391.897,-33.7294,0	0/1:101:70,31:70:2508:31:1112:-69.9873,0,-195.568	1/1:268:2,266:2:72:266:9543:-851.758,-73.8393,0	0/1:83:56,27:56:2008:27:960:-61.6907,0,-156.008	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:326:13,313:13:464:313:11208:-966.26,-56.0383,0	1/1:152:0,152:0:0:152:5448:-489.972,-45.7566,0	0/1:71:42,29:42:1508:29:1036:-72.1726,0,-114.633	0/1:157:71,85:71:2548:85:3052:-227.574,0,-182.25	0/1:190:98,92:98:3513:92:3297:-239.574,0,-259.166	0/1:106:57,49:57:2040:49:1745:-125.089,0,-151.961	1/1:127:0,127:0:0:127:4545:-408.18,-38.2308,0	1/1:452:8,443:8:288:443:15859:-1400.34,-109.857,0	0/1:113:77,36:77:2753:36:1296:-82.9275,0,-213.989	1/1:132:0,132:0:0:132:4736:-426.359,-39.736,0	1/1:194:0,194:0:0:194:6960:-626.147,-58.3998,0	0/1:105:71,34:71:2552:34:1224:-78.8473,0,-198.321	1/1:41:1,40:1:36:40:1440:-126.225,-8.74396,0	0/1:89:50,39:50:1780:39:1400:-99.5013,0,-133.691	1/1:142:1,141:1:36:141:5072:-452.999,-39.148,0	0/1:43:19,24:19:684:24:864:-65.1301,0,-48.7553	0/1:97:43,54:43:1528:54:1944:-146.028,0,-107.675	0/1:87:51,36:51:1816:36:1292:-90.386,0,-137.502	0/1:249:79,170:79:2832:170:6104:-474.452,0,-180.032	0/1:383:43,340:43:1544:340:12212:-983.245,0,-23.9586	0/1:83:71,12:71:2544:12:432:-14.2334,0,-204.225	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:133:0,133:0:0:133:4764:-428.902,-40.037,0
chr03	28960518	.	C	G	305972	PASS	AB=0.521856;ABP=26.1706;AC=142;AF=0.755319;AN=188;AO=14171;CIGAR=1X;DP=16925;DPB=16925;DPRA=0;EPP=30774.9;EPPR=5907.26;GTI=1;LEN=1;MEANALT=1.24468;MQM=59.7221;MQMR=59.9428;NS=94;NUMALT=1;ODDS=4.89034;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=505093;QR=96519;RO=2727;RPL=14171;RPP=30774.9;RPPR=5907.26;RPR=0;RUN=1;SAF=14171;SAP=30774.9;SAR=0;SRF=2727;SRP=5924.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:26,27:26:908:27:953:-69.8847,0,-65.8339	0/1:218:124,93:124:4377:93:3327:-233.953,0,-328.398	0/1:108:49,59:49:1739:59:2107:-157.094,0,-124.281	1/1:206:0,205:0:0:205:7324:-658.77,-61.7112,0	0/1:37:17,20:17:599:20:716:-53.6296,0,-43.1	0/1:49:30,19:30:1080:19:680:-46.7623,0,-82.7628	0/1:131:81,50:81:2886:50:1784:-121.403,0,-220.541	0/1:152:77,75:77:2759:75:2669:-194.492,0,-202.794	0/1:112:52,60:52:1868:60:2115:-156.893,0,-134.681	0/1:54:33,19:33:1165:19:684:-45.8814,0,-89.0604	0/1:196:32,163:32:1139:163:5780:-461.282,0,-43.7965	0/1:82:40,42:40:1411:42:1488:-109.522,0,-102.602	0/1:85:38,47:38:1342:47:1668:-124.784,0,-95.491	1/1:58:0,58:0:0:58:2034:-183.323,-17.4597,0	0/1:57:33,24:33:1164:24:832:-58.0271,0,-87.9055	0/1:115:74,41:74:2582:41:1455:-96.6176,0,-198.008	0/1:57:30,27:30:1054:27:938:-67.5624,0,-78.0105	1/1:66:0,66:0:0:66:2364:-213.002,-19.868,0	0/1:128:27,101:27:959:101:3549:-281.072,0,-48.0936	1/1:219:2,217:2:72:217:7731:-688.974,-59.0888,0	1/1:122:0,122:0:0:122:4326:-389.493,-36.7257,0	1/1:156:1,154:1:36:154:5494:-490.941,-43.4212,0	0/1:59:40,19:40:1436:19:684:-44.1272,0,-111.777	0/1:104:46,58:46:1622:58:2067:-154.989,0,-114.958	1/1:71:0,71:0:0:71:2548:-229.569,-21.3731,0	0/1:297:160,136:160:5680:136:4851:-347.361,0,-421.944	1/1:232:1,231:1:36:231:8184:-732.936,-66.2407,0	0/1:39:21,18:21:744:18:631:-45.3755,0,-55.5442	1/1:307:0,307:0:0:307:10995:-989.428,-92.4162,0	0/1:176:92,82:92:3272:82:2928:-211.017,0,-241.994	1/1:129:0,129:0:0:129:4605:-414.609,-38.8329,0	1/1:744:2,742:2:57:742:26496:-2378.04,-218.553,0	1/1:346:9,337:9:320:337:12027:-1053.08,-75.014,0	1/1:663:0,662:0:0:662:23561:-2119.24,-199.282,0	1/1:983:1,982:1:36:982:35059:-3150.21,-292.314,0	1/1:788:1,787:1:36:787:28025:-2515.96,-233.613,0	1/1:230:0,230:0:0:230:8168:-735.096,-69.2369,0	0/1:252:138,114:138:4940:114:4072:-290.796,0,-368.881	0/1:267:45,222:45:1575:222:7890:-629.587,0,-61.662	1/1:183:3,180:3:108:180:6385:-564.645,-45.0133,0	0/1:135:69,65:69:2463:65:2323:-168.696,0,-181.295	1/1:237:0,237:0:0:237:8415:-757.304,-71.3441,0	1/1:142:0,142:0:0:142:5069:-456.349,-42.7463,0	1/1:59:0,59:0:0:59:2103:-189.534,-17.7608,0	1/1:53:0,53:0:0:53:1875:-169,-15.9546,0	1/1:85:0,85:0:0:85:3039:-273.738,-25.5876,0	0/1:141:85,56:85:3047:56:1988:-136.738,0,-232.013	1/1:116:0,116:0:0:116:4145:-373.202,-34.9195,0	1/1:126:0,125:0:0:125:4480:-403.002,-37.6288,0	1/1:199:0,199:0:0:199:7144:-642.926,-59.905,0	0/1:147:91,56:91:3239:56:1988:-134.923,0,-247.478	1/1:639:1,638:1:36:638:22793:-2047.05,-188.76,0	0/1:126:73,53:73:2561:53:1894:-132.362,0,-192.806	0/1:53:26,27:26:932:27:972:-71.8433,0,-68.2443	1/1:381:5,375:5:180:375:13406:-1189.64,-98.1992,0	1/1:120:0,120:0:0:120:4293:-386.542,-36.1236,0	0/1:32:14,18:14:504:18:644:-48.6576,0,-36.0651	1/1:480:0,479:0:0:479:17125:-1540.45,-144.193,0	1/1:416:14,402:14:500:402:14308:-1242.03,-79.8923,0	0/1:75:45,30:45:1593:30:1080:-74.936,0,-121.079	0/1:123:68,55:68:2413:55:1955:-139.143,0,-180.398	1/1:184:3,181:3:108:181:6452:-570.67,-45.3144,0	1/1:137:0,135:0:0:135:4830:-434.437,-40.6391,0	1/1:201:0,200:0:0:200:7135:-641.806,-60.206,0	1/1:48:0,47:0:0:47:1671:-150.312,-14.1484,0	1/1:94:1,93:1:36:93:3330:-296.281,-24.6985,0	1/1:120:1,119:1:36:119:4272:-381.047,-32.5253,0	0/1:98:67,31:67:2368:31:1108:-70.5301,0,-183.876	1/1:268:3,265:3:108:265:9389:-834.781,-70.6009,0	0/1:82:56,26:56:1984:26:932:-59.5073,0,-154.147	1/1:61:0,61:0:0:61:2148:-193.586,-18.3628,0	1/1:323:13,309:13:460:309:11030:-950.441,-55.5557,0	1/1:149:1,148:1:36:148:5276:-471.329,-41.2552,0	0/1:70:41,29:41:1460:29:1016:-70.6687,0,-110.621	0/1:155:68,87:68:2389:87:3128:-235.072,0,-168.605	0/1:187:97,90:97:3441:90:3212:-232.919,0,-253.592	0/1:104:55,48:55:1945:48:1724:-124.063,0,-143.957	1/1:118:0,118:0:0:118:4232:-380.97,-35.5215,0	1/1:448:9,439:9:324:439:15703:-1383.11,-105.356,0	0/1:114:76,35:76:2684:35:1256:-79.5714,0,-208.03	1/1:125:0,124:0:0:124:4402:-395.957,-37.3277,0	1/1:195:0,195:0:0:195:6991:-628.935,-58.7009,0	0/1:104:71,33:71:2520:33:1150:-72.4921,0,-195.743	1/1:41:1,40:1:36:40:1389:-121.633,-8.74396,0	0/1:88:48,39:48:1647:39:1379:-97.8525,0,-121.96	1/1:137:1,136:1:36:136:4853:-433.297,-37.6428,0	0/1:41:17,24:17:595:24:864:-65.7322,0,-41.5344	0/1:94:41,53:41:1416:53:1879:-141.083,0,-98.4951	0/1:84:49,34:49:1726:34:1218:-84.6933,0,-130.394	0/1:247:79,168:79:2750:168:5917:-458.241,0,-173.367	0/1:372:44,328:44:1545:328:11640:-935.132,0,-27.3564	0/1:81:69,12:69:2399:12:420:-13.7482,0,-191.778	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:131:0,131:0:0:131:4662:-419.726,-39.4349,0
chr03	28960521	.	GTACC	GTACT,TTACT	373927	PASS	AB=0.517096,0.478345;ABP=17.4887,26.2401;AC=142,46;AF=0.755319,0.244681;AN=188;AO=14337,2804;CIGAR=4M1X,1X3M1X;DP=17221;DPB=17225.8;DPRA=0,1.23324;EPP=31135.4,6091.82;EPPR=22.5536;GTI=1;LEN=1,5;MEANALT=2.3617,2.72308;MQM=59.7281,59.9301;MQMR=60;NS=94;NUMALT=2;ODDS=6.58203;PAIRED=0,0;PAIREDR=0;PAO=3.5,2;PQA=121.5,72;PQR=121.5;PRO=3.5;QA=512235,98845;QR=315;RO=9;RPL=14337,2804;RPP=31135.4,6091.82;RPPR=22.5536;RPR=0,0;RUN=1,1;SAF=14337,2804;SAP=31135.4,6091.82;SAR=0,0;SRF=9;SRP=22.5536;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:55:0,27,28:0:0:27,28:968,958:-157.059,-78.0997,-69.9719,-79.3096,0,-70.8807	1/2:226:0,96,129:0:0:96,129:3448,4538:-650.651,-369.388,-340.489,-281.259,0,-242.427	1/2:110:0,59,51:0:0:59,51:2116,1784:-316.865,-145.481,-127.72,-171.736,0,-156.384	1/1:219:0,217,0:0:0:217,0:7756,0:-697.567,-65.3235,0,-697.567,-65.3235,-697.567	1/2:38:0,20,18:0:0:20,18:720,611:-108.647,-49.8883,-43.8677,-59.1082,0,-53.6896	1/2:49:0,19,30:0:0:19,30:684,1060:-142.477,-86.6801,-80.9605,-56.1544,0,-47.1235	1/2:136:0,54,82:0:0:54,82:1927,2884:-391.841,-234.753,-218.497,-157.084,0,-132.399	1/2:156:0,78,78:0:0:78,78:2783,2758:-451.653,-224.984,-201.503,-227.024,0,-203.544	1/2:114:0,58,54:0:0:58,54:2080,1916:-325.763,-156.109,-138.649,-169.661,0,-153.405	1/2:54:0,19,34:0:0:19,34:684,1203:-153.883,-98.0689,-92.3493,-55.8975,0,-45.6625	1/2:200:0,166,33:0:0:166,33:5948,1169:-580.232,-95.2243,-45.2533,-485.003,0,-475.069	1/2:82:0,41,41:0:0:41,41:1461,1444:-237,-117.913,-105.571,-119.441,0,-107.099	1/2:86:0,47,39:0:0:47,39:1667,1356:-246.377,-110.595,-96.447,-136.132,0,-124.392	1/1:58:1,56,0:1:36:56,0:2000,0:-176.714,-13.8753,0,-177.015,-16.8577,-179.953	1/2:60:0,25,35:0:0:25,35:892,1238:-173.898,-101.187,-93.6615,-73.0658,0,-62.5297	1/2:116:0,41,74:0:0:41,74:1448,2601:-329.602,-211.702,-199.36,-117.893,0,-95.6165	1/2:59:0,28,31:0:0:28,31:991,1101:-170.781,-90.069,-81.6401,-81.0665,0,-71.7346	1/1:68:0,67,0:0:0:67,0:2404,0:-216.246,-20.169,0,-216.246,-20.169,-216.246	1/2:131:0,102,26:0:0:102,26:3644,924:-372.419,-75.3306,-44.6255,-297.123,0,-289.296	1/1:222:0,220,2:0:0:220,2:7840,72:-705.253,-66.2266,0,-699.378,-59.9919,-698.776	1/1:126:0,125,0:0:0:125,0:4471,0:-402.183,-37.6288,0,-402.183,-37.6288,-402.183	1/1:156:0,155,1:0:0:155,1:5559,36:-500.023,-46.6597,0,-497.085,-43.3624,-496.784	1/2:60:0,19,41:0:0:19,41:684,1469:-175.973,-120.164,-114.445,-56.1684,0,-43.8262	1/2:107:0,60,47:0:0:60,47:2145,1659:-310.343,-135.448,-117.386,-175.249,0,-161.101	1/1:73:0,73,0:0:0:73,0:2611,0:-235.237,-21.9752,0,-235.237,-21.9752,-235.237	1/2:310:0,140,169:0:0:140,169:5021,5959:-894.795,-485.278,-443.133,-409.603,0,-358.729	1/1:230:0,229,1:0:0:229,1:8172,36:-734.969,-68.9359,0,-732.032,-65.6386,-731.731	1/2:40:0,18,22:0:0:18,22:639,783:-116.236,-64.1714,-58.7529,-52.4197,0,-45.797	1/1:309:0,307,0:0:0:307,0:10987,0:-988.268,-92.4162,0,-988.268,-92.4162,-988.268	1/2:175:0,82,93:0:0:82,93:2908,3255:-502.078,-265.179,-240.495,-237.252,0,-209.256	1/1:130:0,130,0:0:0:130,0:4655,0:-419.106,-39.1339,0,-419.106,-39.1339,-419.106	1/1:757:0,751,1:0:0:751,1:26826,36:-2413.03,-226.074,0,-2410.09,-223.133,-2409.79	1/1:351:0,341,9:0:0:341,9:12185,313:-1096.04,-102.651,0,-1070.59,-77.1958,-1067.88	1/1:673:0,665,4:0:0:665,4:23742,141:-2135.3,-200.185,0,-2123.83,-188.718,-2122.63	1/1:997:0,994,0:0:0:994,0:35465,0:-3189.36,-299.224,0,-3189.36,-299.224,-3189.36	1/1:798:0,791,1:0:0:791,1:28252,35:-2541.11,-238.115,0,-2538.26,-235.259,-2537.96	1/1:230:0,230,0:0:0:230,0:8217,0:-739.408,-69.2369,0,-739.408,-69.2369,-739.408	1/2:264:0,118,141:0:0:118,141:4219,4971:-748.765,-404.758,-369.236,-344.022,0,-301.577	1/2:272:0,226,46:0:0:226,46:8070,1623:-790.248,-132.511,-64.478,-658.091,0,-644.243	1/1:190:0,187,3:0:0:187,3:6660,108:-598.99,-56.2926,0,-590.178,-47.1205,-589.275	1/2:137:0,67,69:0:0:67,69:2391,2438:-393.454,-198.544,-178.375,-194.905,0,-174.134	1/1:241:0,239,0:0:0:239,0:8537,0:-767.928,-71.9462,0,-767.928,-71.9462,-767.928	1/1:142:0,142,0:0:0:142,0:5076,0:-456.977,-42.7463,0,-456.977,-42.7463,-456.977	1/1:62:1,61,0:1:35:61,0:2188,0:-193.682,-15.1652,0,-193.983,-18.3628,-196.831	1/1:51:0,51,0:0:0:51,0:1799,0:-162.124,-15.3525,0,-162.124,-15.3525,-162.124	1/1:85:0,84,0:0:0:84,0:3016,0:-271.389,-25.2865,0,-271.389,-25.2865,-271.389	1/2:140:0,54,86:0:0:54,86:1916,3010:-401.343,-245.245,-228.989,-156.451,0,-130.562	1/1:112:0,112,0:0:0:112,0:4009,0:-360.993,-33.7154,0,-360.993,-33.7154,-360.993	1/1:130:0,129,0:0:0:129,0:4613,0:-414.968,-38.8329,0,-414.968,-38.8329,-414.968	1/1:203:0,202,0:0:0:202,0:7251,0:-652.376,-60.8081,0,-652.376,-60.8081,-652.376	1/2:150:0,57,93:0:0:57,93:2039,3303:-435.736,-269.494,-252.336,-166.599,0,-138.603	1/1:646:1,644,1:1:35:644,1:23021,36:-2067.65,-191.021,0,-2065.02,-190.921,-2067.56	1/2:130:0,53,75:0:0:53,75:1899,2631:-368.989,-214.174,-198.219,-154.881,0,-132.304	1/2:54:0,28,26:0:0:28,26:1004,927:-157.811,-75.9213,-67.4925,-82.247,0,-74.4202	1/1:392:1,382,5:1:30:382,5:13656,178:-1225.62,-112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chr03	28960596	.	GATG	CGTG,CATG	177624	PASS	AB=0.47743,0.516599;ABP=21.536,13.0306;AC=136,52;AF=0.723404,0.276596;AN=188;AO=6210,2204;CIGAR=2X2M,1X3M;DP=8471;DPB=8471;DPRA=3.7845,0.964988;EPP=13487.9,4771.58;EPPR=0;GTI=1;LEN=2,1;MEANALT=2.17204,2.54098;MQM=53.938,59.0563;MQMR=0;NS=94;NUMALT=2;ODDS=4.35741;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=218955,78691;QR=0;RO=0;RPL=0,2;RPP=13487.9,4771.58;RPPR=0;RPR=6210,2202;RUN=1,1;SAF=0,0;SAP=13487.9,4788.94;SAR=6210,2204;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:51:0,23,28:0:0:23,28:804,995:-146.559,-81.3436,-74.4199,-65.5666,0,-57.1377	1/2:82:0,35,47:0:0:35,47:1215,1672:-234.37,-136.107,-125.571,-98.6125,0,-84.4641	1/2:136:0,71,65:0:0:71,65:2515,2321:-392.56,-189.393,-168.02,-203.522,0,-183.955	1/1:256:0,252,2:0:0:252,2:8873,72:-796.315,-75.8596,0,-790.44,-69.9799,-789.838	1/2:80:0,49,31:0:0:49,31:1736,1097:-230.79,-89.7061,-74.9556,-141.438,0,-132.106	1/2:51:0,18,31:0:0:18,31:648,1112:-143.255,-90.7096,-85.2911,-52.5536,0,-43.2216	1/2:162:0,93,69:0:0:93,69:3291,2476:-468.947,-202.276,-174.281,-267.027,0,-246.256	1/2:61:0,29,31:0:0:29,31:1026,1099:-171.743,-89.2985,-80.5686,-82.5652,0,-73.2333	1/2:103:0,52,51:0:0:52,51:1836,1824:-297.385,-148.968,-133.315,-148.771,0,-133.419	1/2:77:0,29,47:0:0:29,47:1021,1683:-220.169,-137.2,-128.47,-82.9634,0,-68.815	1/2:60:0,22,38:0:0:22,38:783,1368:-175.625,-111.946,-105.324,-64.0355,0,-52.5963	1/2:78:0,46,32:0:0:46,32:1610,1152:-223.959,-94.2664,-80.419,-130.047,0,-120.414	1/2:83:0,36,47:0:0:36,47:1279,1688:-241.439,-137.935,-127.098,-103.86,0,-89.7113	1/1:83:0,83,0:0:0:83,0:2925,0:-262.334,-24.9855,0,-262.334,-24.9855,-262.334	1/2:65:0,28,37:0:0:28,37:990,1316:-187.947,-107.559,-99.1298,-80.7422,0,-69.6041	1/2:56:0,32,24:0:0:32,24:1105,860:-159.865,-70.253,-60.62,-89.9637,0,-82.739	1/2:82:0,39,43:0:0:39,43:1387,1544:-238.372,-126.308,-114.568,-112.419,0,-99.4752	1/1:59:0,59,0:0:0:59,0:2062,0:-184.344,-17.7608,0,-184.344,-17.7608,-184.344	1/2:64:0,25,39:0:0:25,39:876,1396:-184.764,-114.027,-106.501,-71.0878,0,-59.3477	1/1:150:0,148,1:0:0:148,1:5249,36:-470.872,-44.5524,0,-467.935,-41.6149,-467.634	1/1:100:0,95,3:0:0:95,3:3343,78:-299.981,-28.5979,0,-293.871,-22.5201,-292.968	1/1:100:0,98,0:0:0:98,0:3439,0:-308.884,-29.5009,0,-308.884,-29.5009,-308.884	1/2:65:0,34,31:0:0:34,31:1179,1097:-185.296,-89.6708,-79.4358,-95.9756,0,-86.6436	1/2:88:0,34,54:0:0:34,54:1198,1929:-254.238,-157.601,-147.366,-96.9892,0,-80.7336	1/1:82:0,81,0:0:0:81,0:2828,0:-253.029,-24.3834,0,-253.029,-24.3834,-253.029	1/2:274:0,111,162:0:0:111,162:3880,5777:-785.874,-470.556,-437.142,-315.316,0,-266.549	1/1:242:0,242,0:0:0:242,0:8458,0:-758.705,-72.8493,0,-758.705,-72.8493,-758.705	1/2:28:0,14,14:0:0:14,14:504,504:-82.5145,-41.4551,-37.2407,-41.4189,0,-37.2045	1/1:338:0,337,0:0:0:337,0:11910,0:-1069.68,-101.447,0,-1069.68,-101.447,-1069.68	1/2:117:0,56,60:0:0:56,60:1973,2141:-334.308,-174.48,-157.623,-159.825,0,-141.763	1/1:182:0,181,0:0:0:181,0:6354,0:-570.237,-54.4864,0,-570.237,-54.4864,-570.237	1/1:8:0,8,0:0:0:8,0:286,0:-26.0463,-2.40824,0,-26.0463,-2.40824,-26.0463	1/2:14:0,6,8:0:0:6,8:216,288:-41.4559,-23.8592,-22.053,-17.9563,0,-15.548	1/1:9:0,9,0:0:0:9,0:308,0:-27.6803,-2.70927,0,-27.6803,-2.70927,-27.6803	1/1:16:0,16,0:0:0:16,0:547,0:-49.3151,-4.81648,0,-49.3151,-4.81648,-49.3151	1/1:24:0,24,0:0:0:24,0:851,0:-76.1359,-7.22472,0,-76.1359,-7.22472,-76.1359	1/1:196:0,195,0:0:0:195,0:6850,0:-615.537,-58.7009,0,-615.537,-58.7009,-615.537	1/2:109:0,34,73:0:0:34,73:1200,2595:-308.832,-211.505,-201.27,-97.3747,0,-75.3995	1/2:78:0,36,42:0:0:36,42:1271,1487:-223.541,-121.208,-110.371,-102.684,0,-90.0411	1/1:1:0,1,0:0:0:1,0:25,0:-2.48652,-0.30103,0,-2.48652,-0.30103,-2.48652	1/2:110:0,63,47:0:0:63,47:2226,1675:-317.03,-136.825,-117.86,-180.559,0,-166.41	1/1:41:0,41,0:0:0:41,0:1452,0:-130.17,-12.3422,0,-130.17,-12.3422,-130.17	1/1:98:0,97,0:0:0:97,0:3405,0:-305.458,-29.1999,0,-305.458,-29.1999,-305.458	1/1:58:0,58,0:0:0:58,0:2003,0:-179.232,-17.4597,0,-179.232,-17.4597,-179.232	1/1:63:0,61,0:0:0:61,0:2153,0:-193.097,-18.3628,0,-193.097,-18.3628,-193.097	1/1:80:0,80,0:0:0:80,0:2835,0:-255,-24.0824,0,-255,-24.0824,-255	1/2:56:0,32,21:0:0:32,21:1127,743:-151.778,-60.4022,-50.7693,-91.3935,0,-85.0719	1/1:180:0,179,0:0:0:179,0:6340,0:-569.118,-53.8844,0,-569.118,-53.8844,-569.118	1/1:94:0,94,0:0:0:94,0:3351,0:-301.241,-28.2968,0,-301.241,-28.2968,-301.241	1/1:110:0,109,0:0:0:109,0:3844,0:-345.123,-32.8123,0,-345.123,-32.8123,-345.123	1/2:160:0,84,76:0:0:84,76:2971,2724:-463.965,-222.473,-197.186,-241.848,0,-218.97	1/1:9:0,9,0:0:0:9,0:302,0:-27.4874,-2.70927,0,-27.4874,-2.70927,-27.4874	1/2:159:0,86,70:0:0:86,70:3060,2499:-451.562,-203.423,-177.534,-248.168,0,-227.095	1/2:35:0,10,25:0:0:10,25:347,887:-100.481,-72.4145,-69.4042,-28.4142,0,-20.8885	1/2:26:0,21,5:0:0:21,5:721,180:-73.3918,-15.0469,-8.72528,-58.7013,0,-57.1962	1/1:91:0,91,0:0:0:91,0:3205,0:-287.845,-27.3937,0,-287.845,-27.3937,-287.845	1/2:43:0,8,35:0:0:8,35:275,1256:-124.976,-102.771,-100.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chr03	28966744	.	T	C	125288	PASS	AB=0.53974;ABP=59.9644;AC=135;AF=0.718085;AN=188;AO=7626;CIGAR=1X;DP=9554;DPB=9554;DPRA=0;EPP=16562.7;EPPR=4170.07;GTI=6;LEN=1;MEANALT=1.08511;MQM=31.7729;MQMR=58.8473;NS=94;NUMALT=1;ODDS=6.04553;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273259;QR=68749;RO=1919;RPL=0;RPP=16562.7;RPPR=4170.07;RPR=7626;RUN=1;SAF=7626;SAP=16562.7;SAR=0;SRF=1919;SRP=4170.07;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:115:64,51:64:2296:51:1832:-105.476,0,-172.179	0/1:61:40,21:40:1421:21:752:-39.5328,0,-109.759	0/1:174:63,111:63:2260:111:3946:-250.243,0,-150.447	1/1:278:1,277:1:36:277:9932:-754.22,-80.0885,0	0/1:81:29,52:29:1040:52:1864:-118.183,0,-69.4721	0/1:32:15,17:15:540:17:612:-37.4069,0,-39.0299	0/1:83:22,61:22:784:61:2192:-141.731,0,-45.8459	0/1:194:80,114:80:2872:114:4096:-255.083,0,-200.227	0/1:112:53,59:53:1888:59:2120:-128.509,0,-136.459	0/1:80:43,37:43:1544:37:1328:-77.5513,0,-114.925	0/1:9:7,2:7:252:2:72:-3.09435,0,-20.2643	0/1:29:15,14:15:540:14:504:-30.0628,0,-40.2067	0/1:29:15,14:15:536:14:504:-29.851,0,-39.7998	1/1:11:0,11:0:0:11:392:-28.9878,-3.31133,0	0/1:22:13,9:13:468:9:324:-18.8074,0,-35.8326	0/1:17:7,10:7:252:10:356:-22.5373,0,-17.9105	0/1:10:5,5:5:180:5:180:-11.0406,0,-13.5418	1/1:11:0,11:0:0:11:396:-30.3331,-3.31133,0	0/1:4:2,2:2:72:2:72:-4.5995,0,-5.6326	1/1:305:0,305:0:0:305:10932:-829.391,-91.8142,0	1/1:163:0,163:0:0:163:5860:-444.359,-49.0679,0	1/1:234:0,233:0:0:233:8317:-633.927,-70.14,0	0/1:165:71,94:71:2544:94:3372:-207.506,0,-179.478	0/1:108:49,59:49:1737:59:2108:-129.156,0,-123.952	1/1:149:0,149:0:0:149:5337:-405.88,-44.8535,0	0/1:428:196,232:196:7005:232:8300:-502.905,0,-498.752	1/1:317:0,317:0:0:317:11364:-866.134,-95.4265,0	0/1:6:2,4:2:72:4:144:-9.49561,0,-5.03054	1/1:369:1,367:1:36:367:13176:-999.603,-108.03,0	0/1:166:81,85:81:2912:85:3056:-182.705,0,-212.271	1/1:206:0,206:0:0:206:7368:-561.345,-62.0122,0	1/1:21:0,21:0:0:21:752:-57.8956,-6.32163,0	0/1:23:4,19:4:144:19:684:-45.5476,0,-6.3439	1/1:8:0,8:0:0:8:288:-22.2981,-2.40824,0	1/1:9:0,9:0:0:9:320:-24.9056,-2.70927,0	1/1:8:0,8:0:0:8:288:-22.2981,-2.40824,0	1/1:56:0,54:0:0:54:1936:-146.094,-16.2556,0	0/1:193:104,89:104:3721:89:3186:-183.523,0,-276.967	0/1:12:6,6:6:216:6:216:-13.0485,0,-16.1782	0/1:9:7,2:7:248:2:72:-3.09435,0,-19.9549	0/1:139:54,85:54:1925:85:3048:-190.599,0,-131.622	1/1:8:0,8:0:0:8:288:-22.2981,-2.40824,0	1/1:201:0,201:0:0:201:7196:-545.603,-60.507,0	1/1:12:0,12:0:0:12:428:-33.1053,-3.61236,0	1/1:24:0,24:0:0:24:856:-65.116,-7.22472,0	1/1:191:0,191:0:0:191:6864:-516.994,-57.4967,0	0/1:126:57,69:57:2044:69:2476:-151.845,0,-146.23	1/1:230:1,229:1:36:229:8208:-621.938,-65.6386,0	1/1:122:0,122:0:0:122:4368:-331.61,-36.7257,0	1/1:190:0,190:0:0:190:6808:-515.422,-57.1957,0	0/1:204:107,97:107:3832:97:3472:-202.902,0,-283.034	1/1:17:0,17:0:0:17:612:-45.1095,-5.11751,0	0/1:157:75,82:75:2696:82:2926:-177.713,0,-195.599	0/1:91:28,63:28:1008:63:2251:-144.082,0,-63.5619	0/1:18:3,15:3:108:15:536:-35.9153,0,-4.65663	1/1:177:0,177:0:0:177:6351:-477.52,-53.2823,0	0/1:85:40,44:40:1436:44:1576:-92.7603,0,-103.881	1/1:13:0,13:0:0:13:468:-36.0435,-3.91339,0	0/1:21:10,11:10:352:11:392:-24.0824,0,-25.6861	0/1:81:27,54:27:968:54:1936:-124.026,0,-63.0535	0/1:47:24,23:24:864:23:820:-48.2295,0,-63.9265	0/1:12:8,4:8:288:4:136:-7.35299,0,-22.653	1/1:249:0,248:0:0:248:8874:-672.611,-74.6554,0	1/1:273:3,269:3:108:269:9648:-726.838,-72.0508,0	1/1:62:0,62:0:0:62:2212:-168.419,-18.6639,0	1/1:116:0,116:0:0:116:4176:-317.506,-34.9195,0	1/1:268:1,267:1:36:267:9596:-726.719,-77.0782,0	0/1:165:107,57:107:3844:57:2036:-106.649,0,-295.548	1/1:7:0,7:0:0:7:252:-19.549,-2.10721,0	0/1:38:20,18:20:720:18:648:-38.3498,0,-53.6896	1/1:29:0,29:0:0:29:1040:-79.8885,-8.72987,0	0/1:24:8,16:8:284:16:572:-36.8731,0,-18.6316	1/1:179:0,179:0:0:179:6403:-490.667,-53.8844,0	0/1:91:42,49:42:1504:49:1748:-106.919,0,-108.215	0/1:149:64,85:64:2288:85:3040:-187.164,0,-160.92	0/1:145:61,84:61:2192:84:3005:-185.058,0,-153.88	0/1:111:50,61:50:1788:61:2196:-133.824,0,-127.673	1/1:72:2,69:2:72:69:2476:-182.846,-14.9064,0	0/1:15:3,12:3:108:12:428:-28.6378,0,-5.4876	0/1:107:35,72:35:1256:72:2580:-165.759,0,-81.02	1/1:178:0,178:0:0:178:6361:-486.724,-53.5833,0	1/1:327:0,327:0:0:327:11716:-886.618,-98.4368,0	0/1:33:17,16:17:612:16:576:-34.3568,0,-45.4746	1/1:22:0,22:0:0:22:792:-59.3094,-6.62266,0	0/1:16:8,8:8:284:8:288:-17.4816,0,-21.0857	1/1:30:0,30:0:0:30:1080:-82.6409,-9.0309,0	0/1:18:7,11:7:252:11:396:-25.1268,0,-17.6104	0/1:24:13,11:13:468:11:381:-22.4229,0,-35.2349	0/1:17:10,7:10:360:7:252:-14.4315,0,-27.6268	0/1:6:2,4:2:72:4:144:-9.49561,0,-5.03054	0/1:16:9,7:9:320:7:252:-14.7326,0,-24.25	0/1:34:27,7:27:972:7:248:-9.17191,0,-77.5115	1/1:225:1,224:1:36:224:8028:-605.28,-64.1403,0	1/1:35:0,35:0:0:35:1249:-94.9984,-10.5361,0
chr03	28966787	.	C	T	123090	PASS	AB=0.539981;ABP=60.6568;AC=135;AF=0.718085;AN=188;AO=7591;CIGAR=1X;DP=9512;DPB=9512;DPRA=0;EPP=16486.7;EPPR=4165.72;GTI=6;LEN=1;MEANALT=1.04255;MQM=31.7791;MQMR=58.9416;NS=94;NUMALT=1;ODDS=3.9453;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268132;QR=67991;RO=1917;RPL=7591;RPP=16486.7;RPPR=4165.72;RPR=0;RUN=1;SAF=7591;SAP=16486.7;SAR=0;SRF=1917;SRP=4165.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:111:60,51:60:2109:51:1784:-104.521,0,-156.617	0/1:62:42,20:42:1471:20:716:-36.4826,0,-113.971	0/1:175:63,112:63:2200:112:3952:-252.039,0,-144.961	1/1:275:1,274:1:36:274:9667:-739.587,-79.1854,0	0/1:81:28,53:28:984:53:1849:-118.81,0,-64.4304	0/1:32:14,18:14:504:18:636:-39.7337,0,-36.02	0/1:84:23,61:23:824:61:2171:-141.065,0,-49.1885	0/1:200:82,118:82:2929:118:4211:-263.147,0,-203.547	0/1:111:53,58:53:1878:58:2076:-125.781,0,-135.823	0/1:79:42,37:42:1503:37:1307:-77.0705,0,-111.764	0/1:9:7,2:7:248:2:68:-2.94669,0,-19.8995	0/1:31:15,16:15:540:16:533:-32.8193,0,-39.6046	0/1:29:15,14:15:528:14:492:-29.428,0,-39.0764	1/1:12:0,12:0:0:12:428:-31.7382,-3.61236,0	0/1:21:13,8:13:453:8:288:-15.9092,0,-34.7299	0/1:16:7,9:7:248:9:324:-20.2307,0,-17.8468	0/1:10:5,5:5:171:5:172:-10.7546,0,-12.7152	1/1:11:0,11:0:0:11:388:-30.0505,-3.31133,0	0/1:4:2,2:2:72:2:72:-4.5995,0,-5.6326	1/1:299:0,299:0:0:299:10526:-805.863,-90.008,0	1/1:160:0,160:0:0:160:5673:-433.324,-48.1648,0	1/1:231:0,230:0:0:230:8072:-618.675,-69.2369,0	0/1:168:74,94:74:2625:94:3331:-204.555,0,-185.854	0/1:106:48,58:48:1685:58:2043:-126.103,0,-119.979	1/1:151:0,151:0:0:151:5282:-404.971,-45.4555,0	0/1:431:196,235:196:6956:235:8355:-508.514,0,-494.282	1/1:314:0,313:0:0:313:10999:-845.164,-94.2224,0	0/1:7:3,4:3:108:4:135:-8.75644,0,-7.96796	1/1:364:0,364:0:0:364:12851:-985.378,-109.575,0	0/1:167:83,84:83:2962:84:2963:-177.943,0,-216.467	1/1:203:0,203:0:0:203:7193:-551.215,-61.1091,0	1/1:21:0,21:0:0:21:752:-57.8956,-6.32163,0	0/1:23:3,20:3:104:20:716:-48.622,0,-2.77912	1/1:8:0,8:0:0:8:275:-21.7241,-2.40824,0	1/1:9:0,9:0:0:9:316:-24.764,-2.70927,0	1/1:9:0,9:0:0:9:305:-24.0059,-2.70927,0	1/1:53:0,53:0:0:53:1844:-141.407,-15.9546,0	0/1:193:104,89:104:3711:89:3164:-182.771,0,-276.042	0/1:12:6,6:6:208:6:208:-12.8005,0,-15.4467	0/1:9:7,2:7:248:2:72:-3.09435,0,-19.9549	0/1:138:53,85:53:1892:85:2997:-188.883,0,-128.935	1/1:8:0,8:0:0:8:275:-21.7241,-2.40824,0	1/1:202:1,201:1:36:201:7117:-537.3,-57.2595,0	1/1:12:0,12:0:0:12:432:-33.2274,-3.61236,0	1/1:23:0,23:0:0:23:801:-61.4589,-6.92369,0	1/1:193:0,193:0:0:193:6858:-519.974,-58.0988,0	0/1:126:55,71:55:1968:71:2518:-156.006,0,-139.412	1/1:235:1,234:1:36:234:8211:-625.711,-67.1438,0	1/1:121:0,121:0:0:121:4262:-326.208,-36.4246,0	1/1:188:0,188:0:0:188:6669:-506.787,-56.5936,0	0/1:200:105,95:105:3728:95:3340:-196.969,0,-274.997	1/1:16:0,16:0:0:16:572:-42.2188,-4.81648,0	0/1:158:76,82:76:2686:82:2883:-174.891,0,-194.355	0/1:94:29,65:29:1036:65:2295:-147.194,0,-65.1766	0/1:18:3,15:3:108:15:532:-35.7934,0,-4.65663	1/1:177:0,177:0:0:177:6190:-471.73,-53.2823,0	0/1:85:40,45:40:1417:45:1600:-95.0931,0,-102.174	1/1:13:0,13:0:0:13:464:-35.9025,-3.91339,0	0/1:22:9,13:9:309:13:460:-29.1387,0,-21.5112	0/1:76:26,50:26:928:50:1788:-114.461,0,-60.9596	0/1:46:24,22:24:847:22:784:-45.7812,0,-62.6942	0/1:12:8,4:8:284:4:144:-7.62118,0,-22.2892	1/1:251:0,251:0:0:251:8911:-679.319,-75.5585,0	1/1:270:3,267:3:108:267:9512:-718.687,-71.2038,0	1/1:60:0,60:0:0:60:2115:-162.016,-18.0618,0	1/1:115:0,115:0:0:115:4066:-311.486,-34.6185,0	1/1:265:1,264:1:36:264:9329:-712.208,-76.1751,0	0/1:165:109,56:109:3867:56:1988:-102.646,0,-297.617	1/1:7:0,7:0:0:7:252:-19.549,-2.10721,0	0/1:36:19,17:19:676:17:600:-35.7804,0,-50.3309	1/1:29:0,29:0:0:29:1031:-79.4605,-8.72987,0	0/1:24:7,16:7:248:16:568:-36.7004,0,-15.3841	1/1:172:0,172:0:0:172:6002:-465.059,-51.7772,0	0/1:92:44,48:44:1540:48:1693:-102.838,0,-111.13	0/1:153:67,85:67:2388:85:3030:-185.205,0,-168.703	0/1:145:62,83:62:2200:83:2946:-181.777,0,-154.598	0/1:108:48,60:48:1708:60:2139:-131.341,0,-121.42	1/1:76:1,75:1:36:75:2649:-201.071,-19.28,0	0/1:15:3,12:3:108:12:423:-28.3488,0,-5.4876	0/1:105:35,70:35:1239:70:2471:-159.4,0,-80.0904	1/1:178:0,178:0:0:178:6280:-483.596,-53.5833,0	1/1:319:0,319:0:0:319:11309:-860.841,-96.0286,0	0/1:34:18,16:18:644:16:572:-33.9149,0,-47.9205	1/1:22:0,22:0:0:22:784:-59.0471,-6.62266,0	0/1:15:7,8:7:248:8:288:-17.7827,0,-18.1478	1/1:30:0,30:0:0:30:1064:-82.0792,-9.0309,0	0/1:18:7,11:7:252:11:368:-23.6572,0,-17.6104	0/1:23:12,11:12:424:11:381:-22.724,0,-31.5727	0/1:17:10,7:10:352:7:236:-13.8631,0,-26.9007	0/1:6:2,4:2:72:4:144:-9.49561,0,-5.03054	0/1:16:9,7:9:306:7:248:-14.5905,0,-23.0067	0/1:34:26,8:26:923:8:284:-11.9213,0,-73.1457	1/1:222:1,221:1:36:221:7773:-591.514,-63.2372,0	1/1:36:0,36:0:0:36:1275:-97.3579,-10.8371,0
chr03	29009747	.	T	C	32712.2	PASS	AB=0.499489;ABP=3.01917;AC=53;AF=0.284946;AN=186;AO=1972;CIGAR=1X;DP=7547;DPB=7547;DPRA=1.01092;EPP=4285.15;EPPR=12085.1;GTI=1;LEN=1;MEANALT=1.01754;MQM=59.9878;MQMR=60;NS=93;NUMALT=1;ODDS=6.35804;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70111;QR=199378;RO=5572;RPL=0;RPP=4285.15;RPPR=12093.8;RPR=1972;RUN=1;SAF=0;SAP=4285.15;SAR=1972;SRF=1;SRP=12093.8;SRR=5571;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:21,19:21:756:19:680:-49.488,0,-56.326	0/1:71:37,34:37:1324:34:1220:-88.7337,0,-98.089	0/1:130:62,67:62:2228:67:2387:-176.042,0,-161.739	0/0:185:184,1:184:6596:1:27:0,-52.9908,-591.019	0/1:59:35,24:35:1244:24:851:-59.1493,0,-94.5039	0/1:56:28,28:28:1000:28:1000:-73.4577,0,-73.4577	0/1:131:71,60:71:2541:60:2109:-150.64,0,-189.504	0/1:90:48,42:48:1705:42:1504:-108.562,0,-126.641	0/1:123:59,64:59:2112:64:2289:-169.243,0,-153.322	0/1:93:51,42:51:1836:42:1495:-106.848,0,-137.525	0/1:59:27,32:27:972:32:1140:-85.1484,0,-70.0371	0/1:85:48,37:48:1712:37:1316:-93.1543,0,-128.778	0/1:81:40,41:40:1432:41:1451:-106.502,0,-104.794	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:69:28,41:28:1008:41:1459:-110.834,0,-70.2653	0/1:54:30,24:30:1080:24:848:-60.384,0,-81.2576	0/1:50:30,20:30:1076:20:712:-49.3552,0,-82.1014	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:27:11,16:11:396:16:576:-44.0472,0,-27.8549	0/0:172:171,0:171:6127:0:0:0,-51.4761,-551.288	0/0:148:147,1:147:5245:1:36:0,-40.9542,-468.589	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/1:119:61,58:61:2177:58:2084:-152.007,0,-160.372	0/1:119:69,50:69:2468:50:1792:-125.74,0,-186.552	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:196:94,102:94:3353:102:3623:-267.275,0,-242.984	0/0:127:127,0:127:4553:0:0:0,-38.2308,-409.934	0/1:26:12,14:12:432:14:500:-37.5094,0,-31.3944	0/0:208:208,0:208:7437:0:0:0,-62.6142,-669.374	0/1:128:71,57:71:2544:57:2044:-145.7,0,-190.679	0/0:111:111,0:111:3973:0:0:0,-33.4143,-357.759	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:24:5,19:5:180:19:672:-53.5821,0,-9.32734	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	.:.:.:.:.:.:.:.	0/0:164:162,2:162:5787:2:68:0,-42.9112,-514.488	0/1:138:54,84:54:1936:84:2991:-227.88,0,-132.974	0/1:37:21,16:21:752:16:572:-40.6753,0,-56.8681	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:98:54,44:54:1927:44:1559:-111.1,0,-144.205	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:128:128,0:128:4539:0:0:0,-38.5318,-408.676	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:91:91,0:91:3249:0:0:0,-27.3937,-292.63	0/1:82:54,28:54:1927:28:1004:-65.9914,0,-149.022	0/0:119:119,0:119:4257:0:0:0,-35.8226,-383.307	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.776	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/1:82:42,40:42:1500:40:1428:-104.133,0,-110.61	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:95:61,34:61:2165:34:1216:-81.1487,0,-166.517	0/1:69:32,37:32:1144:37:1300:-96.5274,0,-82.4984	0/1:11:3,8:3:108:8:283:-22.5009,0,-6.76384	0/0:119:119,0:119:4245:0:0:0,-35.8226,-382.229	0/1:54:30,24:30:1072:24:848:-60.384,0,-80.5368	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:67:32,35:32:1152:35:1256:-93.1763,0,-83.8211	0/1:95:51,44:51:1832:44:1567:-112.723,0,-136.563	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	0/0:136:135,1:135:4815:1:36:0,-37.3418,-429.908	0/0:147:147,0:147:5261:0:0:0,-44.2514,-473.625	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.935	0/1:52:26,26:26:936:26:928:-68.1847,0,-68.9059	0/0:115:115,0:115:4091:0:0:0,-34.6184,-368.378	0/1:135:39,96:39:1385:96:3377:-263.505,0,-84.3078	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:55:31,24:31:1116:24:860:-61.1652,0,-84.195	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:14:10,4:10:356:4:144:-9.0992,0,-28.1668	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:70:35,35:35:1252:35:1252:-91.913,0,-91.913	0/1:144:77,67:77:2756:67:2388:-171.805,0,-204.934	0/1:142:61,81:61:2192:81:2896:-218.13,0,-154.799	0/1:74:32,42:32:1148:42:1500:-113.018,0,-81.3536	0/0:86:85,1:85:3036:1:36:0,-22.2903,-269.872	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:81:40,41:40:1436:41:1457:-107.041,0,-105.154	0/0:102:101,0:101:3608:0:0:0,-30.404,-324.567	0/0:162:162,0:162:5801:0:0:0,-48.7669,-522.202	0/1:59:29,30:29:1035:30:1052:-77.2274,0,-75.7023	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/1:68:33,35:33:1180:35:1241:-91.5233,0,-86.038	0/0:123:123,0:123:4411:0:0:0,-37.0267,-397.161	0/1:37:17,20:17:612:20:704:-52.5464,0,-44.2753	0/1:74:35,39:35:1252:39:1373:-101.59,0,-90.7089	0/1:67:31,36:31:1108:36:1247:-92.3585,0,-79.862	0/1:30:18,12:18:648:12:424:-29.4655,0,-49.621	0/1:75:39,36:39:1404:36:1276:-92.5658,0,-104.082	0/1:70:27,43:27:968:43:1522:-116.2,0,-66.3653	0/0:132:132,0:132:4723:0:0:0,-39.736,-425.229	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916
chr03	29037501	.	A	G	53949.3	PASS	AB=0.524746;ABP=27.0836;AC=54;AF=0.287234;AN=188;AO=2395;CIGAR=1X;DP=8395;DPB=8395;DPRA=1.0224;EPP=268.375;EPPR=707.653;GTI=1;LEN=1;MEANALT=1.03125;MQM=58.7319;MQMR=57.5149;NS=94;NUMALT=1;ODDS=4.16047;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85001;QR=214387;RO=5997;RPL=2;RPP=5186.33;RPPR=12921.3;RPR=2393;RUN=1;SAF=1470;SAP=272.314;SAR=925;SRF=3708;SRP=732.107;SRR=2289;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:17,11:17:608:11:392:-26.8613,0,-46.6125	0/1:115:66,49:66:2364:49:1724:-120.758,0,-178.211	0/1:133:62,71:62:2192:71:2497:-184.743,0,-155.694	0/0:117:117,0:117:4171:0:0:0,-35.2205,-374.6	0/1:45:21,24:21:756:24:860:-63.6257,0,-54.7932	0/1:69:39,30:39:1383:30:1078:-76.5519,0,-103.659	0/1:94:51,43:51:1828:43:1515:-107.806,0,-135.653	0/1:129:64,63:64:2287:63:2230:-162.25,0,-167.248	0/1:131:68,63:68:2436:63:2231:-161.611,0,-179.654	0/1:95:40,55:40:1431:55:1954:-147.411,0,-100.457	0/1:79:39,40:39:1404:40:1420:-104.034,0,-102.817	0/1:156:82,74:82:2926:74:2612:-188.252,0,-216.33	0/1:136:65,71:65:2332:71:2514:-185.557,0,-168.551	0/0:120:120,0:120:4276:0:0:0,-36.1236,-384.798	0/1:146:62,84:62:2220:84:2989:-225.128,0,-155.912	0/1:101:45,56:45:1607:56:1981:-148.141,0,-113.822	0/1:115:63,52:63:2256:52:1851:-132.247,0,-167.371	0/0:83:82,1:82:2948:1:32:0,-21.7864,-261.772	0/1:62:34,28:34:1220:28:1000:-71.648,0,-91.2644	0/0:85:84,1:84:2994:1:36:0,-21.9893,-265.145	0/0:163:163,0:163:5810:0:0:0,-49.0679,-521.418	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.319	0/1:73:28,45:28:1008:45:1608:-122.957,0,-69.0388	0/1:44:15,29:15:540:29:1044:-81.0264,0,-35.6689	0/0:63:63,0:63:2243:0:0:0,-18.9649,-201.843	0/1:172:75,97:75:2684:97:3468:-260.546,0,-190.017	0/0:182:182,0:182:6472:0:0:0,-54.7875,-581.23	0/1:74:36,38:36:1283:38:1342:-98.7177,0,-93.4405	0/0:147:147,0:147:5253:0:0:0,-44.2514,-472.72	0/1:66:41,25:41:1457:25:879:-59.4559,0,-111.469	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.247	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:8:3,5:3:108:5:180:-14.1391,0,-7.66693	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5974	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:319:319,0:319:11423:0:0:0,-96.0286,-1026.7	0/1:78:26,52:26:928:52:1860:-144.12,0,-60.3441	0/1:99:36,63:36:1288:63:2237:-171.698,0,-86.3428	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:141:75,66:75:2692:66:2342:-168.41,0,-199.507	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.871	0/0:87:87,0:87:3112:0:0:0,-26.1896,-279.991	0/0:119:119,0:119:4267:0:0:0,-35.8226,-384.018	0/0:100:100,0:100:3559:0:0:0,-30.103,-320.36	0/0:88:86,2:86:3064:2:72:0,-19.6548,-268.931	0/1:87:44,43:44:1572:43:1511:-110.038,0,-115.44	0/0:116:114,2:114:4073:2:72:0,-28.0828,-359.107	0/0:71:71,0:71:2547:0:0:0,-21.3731,-229.402	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.165	0/1:58:28,30:28:1004:30:1063:-78.5115,0,-73.1933	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83426	0/1:100:54,46:54:1940:46:1648:-118.44,0,-144.582	0/1:39:12,27:12:423:27:948:-73.8766,0,-25.9443	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:90:88,2:88:3125:2:72:0,-20.256,-271.963	0/1:26:14,12:14:500:12:424:-30.6616,0,-37.5023	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:4,7:4:144:7:252:-19.7164,0,-10.0023	0/1:58:21,37:21:743:37:1306:-100.361,0,-49.336	0/1:153:72,81:72:2584:81:2879:-213.09,0,-186.484	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83426	0/0:98:96,2:96:3440:2:72:0,-22.6642,-302.723	0/0:185:183,2:183:6552:2:72:0,-48.8563,-582.096	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.54	0/1:43:21,22:21:756:22:775:-56.9828,0,-55.3927	0/0:117:117,0:117:4176:0:0:0,-35.2205,-375.771	0/1:105:33,72:33:1184:72:2550:-197.954,0,-75.1306	0/0:55:54,1:54:1940:1:32:0,-13.358,-171.536	0/1:36:9,26:9:324:26:924:-72.4212,0,-18.5885	0/0:113:113,0:113:4027:0:0:0,-34.0164,-362.437	0/1:17:8,9:8:288:9:324:-24.3813,0,-21.1429	0/0:62:62,0:62:2212:0:0:0,-18.6639,-198.994	0/1:60:30,30:30:1076:30:1072:-78.6567,0,-78.871	0/1:124:55,69:55:1972:69:2443:-182.75,0,-140.185	0/1:81:33,48:33:1184:48:1724:-131.031,0,-82.4345	0/1:105:45,60:45:1586:60:2124:-159.807,0,-110.814	0/0:92:89,3:89:3196:3:104:0,-17.992,-275.735	0/1:7:4,3:4:144:3:108:-7.96713,0,-11.2064	0/1:114:51,63:51:1828:63:2222:-165.803,0,-129.951	0/0:97:97,0:97:3462:0:0:0,-29.1999,-310.347	0/0:112:112,0:112:4007:0:0:0,-33.7154,-358.749	0/1:158:66,92:66:2364:92:3292:-248.674,0,-165.428	0/0:98:97,1:97:3468:1:36:0,-25.9053,-308.536	0/1:140:75,65:75:2683:65:2303:-165.275,0,-199.298	0/0:238:237,1:237:8463:1:36:0,-68.0495,-756.241	0/1:51:24,27:24:864:27:968:-72.0832,0,-62.6874	0/1:107:60,47:60:2156:47:1642:-115.849,0,-161.905	0/1:125:64,61:64:2295:61:2167:-157.054,0,-168.629	0/1:78:44,34:44:1552:34:1220:-86.5992,0,-116.451	0/1:137:74,63:74:2648:63:2222:-158.816,0,-197.011	0/1:112:47,65:47:1692:65:2302:-172.758,0,-117.775	0/0:111:111,0:111:3960:0:0:0,-33.4143,-355.927	0/0:202:202,0:202:7207:0:0:0,-60.8081,-648.066
chr03	29037526	.	G	A	158087	PASS	AB=0.470756;ABP=36.9209;AC=134;AF=0.712766;AN=188;AO=5966;CIGAR=1X;DP=8403;DPB=8403;DPRA=45.1667;EPP=778.859;EPPR=321.782;GTI=1;LEN=1;MEANALT=1.01075;MQM=57.497;MQMR=58.7623;NS=94;NUMALT=1;ODDS=3.1823;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213374;QR=86531;RO=2436;RPL=5937;RPP=12707.3;RPPR=5103.35;RPR=29;RUN=1;SAF=3684;SAP=718.44;SAR=2282;SRF=1495;SRP=276.598;SRR=941;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:12,18:12:428:18:633:-48.2428,0,-29.4983	0/1:120:53,67:53:1892:67:2404:-180.297,0,-134.368	0/1:130:70,60:70:2491:60:2136:-151.784,0,-185.283	1/1:117:0,117:0:0:117:4199:-377.103,-35.2205,0	0/1:49:25,24:25:876:24:860:-62.9312,0,-63.857	0/1:70:31,39:31:1112:39:1396:-104.367,0,-79.3091	0/1:95:44,51:44:1575:51:1802:-133.417,0,-113.163	0/1:133:67,66:67:2399:66:2372:-173.255,0,-175.815	0/1:131:63,68:63:2260:68:2427:-178.959,0,-164.219	0/1:98:59,39:59:2116:39:1400:-96.7665,0,-160.994	0/1:78:39,39:39:1389:39:1404:-103.118,0,-101.643	0/1:158:75,83:75:2625:83:2969:-219.559,0,-188.819	0/1:136:71,65:71:2517:65:2328:-168.554,0,-185.826	1/1:123:0,123:0:0:123:4377:-393.106,-37.0267,0	0/1:147:86,61:86:3058:61:2196:-153.46,0,-231.082	0/1:101:58,43:58:2065:43:1542:-108.063,0,-155.696	0/1:118:54,64:54:1903:64:2292:-169.703,0,-136.018	1/1:83:1,82:1:21:82:2937:-261.881,-22.8856,0	0/1:62:28,34:28:1004:34:1220:-91.2939,0,-72.008	1/1:85:1,84:1:36:84:3024:-267.837,-21.9893,0	1/1:160:0,160:0:0:160:5724:-513.99,-48.1648,0	1/1:38:0,38:0:0:38:1354:-122.098,-11.4391,0	0/1:73:45,28:45:1589:28:995:-67.8685,0,-121.281	0/1:47:31,16:31:1108:16:561:-36.6418,0,-85.8795	1/1:65:0,65:0:0:65:2328:-209.483,-19.567,0	0/1:169:94,75:94:3333:75:2682:-190.735,0,-249.302	1/1:173:0,173:0:0:173:6202:-557.174,-52.0782,0	0/1:74:38,36:38:1342:36:1292:-94.2477,0,-98.7171	1/1:146:1,145:1:36:145:5192:-463.533,-40.3521,0	0/1:65:25,40:25:900:40:1421:-108.535,0,-61.3658	1/1:71:0,71:0:0:71:2552:-229.858,-21.3731,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1391	1/1:6:0,6:0:0:6:216:-19.5974,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:318:0,318:0:0:318:11408:-1025.11,-95.7275,0	0/1:79:51,28:51:1801:28:993:-65.8873,0,-138.51	0/1:99:65,34:65:2290:34:1220:-80.226,0,-176.438	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:140:67,73:67:2387:73:2616:-193.173,0,-172.76	1/1:58:0,58:0:0:58:2054:-185.008,-17.4597,0	1/1:83:0,83:0:0:83:2967:-266.952,-24.9855,0	1/1:117:0,117:0:0:117:4203:-378.292,-35.2205,0	1/1:98:0,98:0:0:98:3506:-315.55,-29.5009,0	1/1:88:2,86:2:72:86:3071:-269.65,-19.6548,0	0/1:93:47,46:47:1676:46:1648:-120.439,0,-123.105	1/1:116:2,114:2:72:114:4071:-359.48,-28.0828,0	1/1:70:0,70:0:0:70:2516:-226.617,-21.0721,0	1/1:81:0,81:0:0:81:2908:-261.869,-24.3834,0	0/1:59:31,28:31:1065:28:1004:-72.8862,0,-78.3827	1/1:2:0,2:0:0:2:72:-6.83426,-0.60206,0	0/1:98:44,54:44:1580:54:1925:-143.727,0,-112.925	0/1:39:28,11:28:1004:11:379:-22.0082,0,-78.9262	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:89:2,87:2:68:87:3101:-271.446,-20.334,0	0/1:27:13,14:13:464:14:504:-37.5632,0,-33.9617	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7164	0/1:60:38,22:38:1368:22:788:-52.5507,0,-105.337	0/1:155:84,70:84:2984:70:2516:-179.901,0,-222.048	1/1:2:0,2:0:0:2:72:-6.83426,-0.60206,0	1/1:95:2,93:2:72:93:3314:-291.491,-21.7611,0	1/1:185:2,183:2:72:183:6546:-581.586,-48.8563,0	1/1:53:0,53:0:0:53:1885:-169.469,-15.9546,0	0/1:44:23,21:23:828:21:745:-54.1106,0,-61.4523	1/1:119:0,119:0:0:119:4268:-384.024,-35.8226,0	0/1:105:71,34:71:2527:34:1216:-77.9598,0,-195.769	1/1:54:1,53:1:32:53:1896:-167.58,-13.057,0	0/1:37:28,9:28:1004:9:320:-17.9828,0,-79.3162	1/1:113:0,113:0:0:113:4033:-362.992,-34.0164,0	0/1:19:11,8:11:381:8:288:-20.5408,0,-28.894	1/1:63:0,63:0:0:63:2246:-202.008,-18.9649,0	0/1:61:30,31:30:1068:31:1108:-81.4048,0,-78.0653	0/1:125:72,53:72:2573:53:1904:-133.764,0,-194.102	0/1:79:46,33:46:1641:33:1184:-83.0579,0,-124.167	0/1:104:59,45:59:2054:45:1594:-111.906,0,-153.809	1/1:94:3,91:3:108:91:3233:-278.525,-18.2217,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96713	0/1:114:63,51:63:2223:51:1832:-130.308,0,-165.892	1/1:97:0,97:0:0:97:3450:-309.309,-29.1999,0	1/1:110:0,110:0:0:110:3940:-352.688,-33.1133,0	0/1:157:91,66:91:3268:66:2361:-165.457,0,-246.837	1/1:102:1,101:1:36:101:3604:-319.871,-27.1094,0	0/1:142:65,77:65:2304:77:2745:-204.199,0,-164.756	1/1:237:1,236:1:36:236:8446:-754.903,-67.7484,0	0/1:52:28,24:28:1000:24:864:-62.3864,0,-74.6143	0/1:110:50,60:50:1758:60:2152:-160.649,0,-125.381	0/1:124:60,64:60:2106:64:2300:-169.365,0,-151.866	0/1:82:38,44:38:1345:44:1552:-115.245,0,-96.6343	0/1:134:61,73:61:2184:73:2606:-194.294,0,-156.312	0/1:112:66,46:66:2321:46:1652:-114.176,0,-174.884	1/1:111:0,111:0:0:111:3963:-356.144,-33.4143,0	1/1:195:0,195:0:0:195:6960:-625.724,-58.7009,0
chr03	29042660	.	TTTAGT	TAT,TTTAAT	264591	PASS	AB=0.397578,0.599352;ABP=537.231,505.684;AC=136,52;AF=0.723404,0.276596;AN=188;AO=6878,3529;CIGAR=1M3D1X1M,4M1X1M;DP=10437;DPB=6990.67;DPRA=56.1022,1.46052;EPP=5716.31,7614.11;EPPR=7.35324;GTI=6;LEN=3,1;MEANALT=1.89247,2.2459;MQM=59.5529,48.5486;MQMR=50;NS=94;NUMALT=2;ODDS=0.861412;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=242798,124881;QR=72;RO=2;RPL=5566,1752;RPP=5716.31,3.39488;RPPR=7.35324;RPR=1312,1777;RUN=1,1;SAF=6878,1758;SAP=14938.4,3.11429;SAR=0,1771;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,17,36:0:0:17,36:608,1243:-149.291,-99.7082,-94.5907,-49.9345,0,-39.0974	1/2:180:0,56,124:0:0:56,124:1982,4339:-493.75,-332.328,-315.471,-161.768,0,-124.44	1/2:272:0,148,124:0:0:148,124:5262,4403:-778.999,-350.483,-305.931,-428.867,0,-391.539	1/1:217:0,216,1:0:0:216,1:7595,36:-683.178,-65.0225,0,-680.24,-61.7252,-679.939	1/2:161:0,68,93:0:0:68,93:2362,3313:-449.919,-257.91,-237.44,-192.354,0,-164.358	1/2:84:0,29,55:0:0:29,55:1024,1933:-232.426,-149.157,-140.428,-83.6143,0,-67.0576	1/2:121:0,29,89:0:0:29,89:1020,3189:-334.478,-251.446,-242.716,-83.099,0,-56.3073	1/2:252:0,81,171:0:0:81,171:2863,6001:-695.824,-462.685,-438.301,-233.486,0,-182.01	1/2:140:0,56,84:0:0:56,84:1969,2903:-384.583,-224.336,-207.478,-160.59,0,-135.304	1/2:111:0,48,63:0:0:48,63:1712,2236:-315.572,-176.019,-161.569,-139.904,0,-120.94	1/2:66:0,21,45:0:0:21,45:752,1594:-188.968,-127.646,-121.324,-61.6764,0,-48.1301	1/2:96:0,33,63:0:0:33,63:1137,2203:-262.81,-170.452,-160.518,-92.6991,0,-73.7342	1/2:109:0,25,83:0:0:25,83:892,2897:-295.883,-223.17,-215.644,-72.8261,0,-47.8406	1/1:64:0,63,0:0:0:63,0:2243,0:-201.746,-18.9649,0,-201.746,-18.9649,-201.746	1/2:83:0,33,50:0:0:33,50:1172,1796:-238.669,-143.194,-133.26,-95.8283,0,-80.7768	1/2:76:1,26,48:1:36:26,48:928,1712:-207.188,-131.844,-126.944,-72.7118,0,-61.1892	1/2:94:0,33,60:0:0:33,60:1184,2111:-257.999,-161.414,-151.48,-96.6812,0,-78.6194	1/1:48:0,46,2:0:0:46,2:1624,70:-146.117,-13.8474,0,-140.962,-8.37127,-140.36	1/2:47:0,21,26:0:0:21,26:752,910:-130.897,-69.7852,-63.4636,-61.4565,0,-53.6297	1/1:221:0,221,0:0:0:221,0:7836,0:-704.894,-66.5276,0,-704.894,-66.5276,-704.894	1/1:136:0,135,0:0:0:135,0:4752,0:-427.297,-40.6391,0,-427.297,-40.6391,-427.297	1/1:215:0,213,0:0:0:213,0:7429,0:-668.205,-64.1194,0,-668.205,-64.1194,-668.205	1/2:91:0,33,57:0:0:33,57:1184,2048:-262.224,-165.655,-155.721,-96.5664,0,-79.4077	1/2:129:0,76,53:0:0:76,53:2673,1873:-367.084,-149.785,-126.906,-217.647,0,-201.693	1/1:86:0,86,0:0:0:86,0:3011,0:-271.15,-25.8886,0,-271.15,-25.8886,-271.15	1/2:345:0,159,185:0:0:159,185:5591,6621:-984.716,-529.627,-481.763,-455.162,0,-399.471	1/1:215:0,215,0:0:0:215,0:7539,0:-677.942,-64.7215,0,-677.942,-64.7215,-677.942	1/2:50:0,15,35:0:0:15,35:523,1234:-138.072,-95.5609,-91.0454,-42.8554,0,-32.3193	1/1:322:0,321,1:0:0:321,1:11335,36:-1019.58,-96.6306,0,-1016.75,-93.451,-1016.45	1/2:117:0,52,65:0:0:52,65:1852,2320:-333.175,-182.233,-166.58,-151.292,0,-131.725	1/1:159:0,159,0:0:0:159,0:5648,0:-508.424,-47.8638,0,-508.424,-47.8638,-508.424	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:13:0,4,9:0:0:4,9:144,324:-38.0885,-26.3372,-25.133,-12.1095,0,-9.40023	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:136,0:-12.5755,-1.20412,0,-12.5755,-1.20412,-12.5755	1/1:5:0,5,0:0:0:5,0:172,0:-15.818,-1.50515,0,-15.818,-1.50515,-15.818	1/1:132:0,131,0:0:0:131,0:4611,0:-414.755,-39.4349,0,-414.755,-39.4349,-414.755	1/2:236:0,146,90:0:0:146,90:5151,3179:-666.12,-246.861,-202.91,-419.603,0,-392.51	1/2:79:0,29,50:0:0:29,50:1004,1756:-219.183,-137.596,-128.866,-81.9299,0,-66.8784	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:198:0,52,145:0:0:52,145:1820,5162:-554.933,-406.898,-391.244,-148.132,0,-104.483	1/1:34:0,34,0:0:0:34,0:1188,0:-107.209,-10.235,0,-107.209,-10.235,-107.209	1/1:118:0,117,0:0:0:117,0:4157,0:-373.704,-35.2205,0,-373.704,-35.2205,-373.704	1/1:47:0,47,0:0:0:47,0:1684,0:-151.823,-14.1484,0,-151.823,-14.1484,-151.823	1/1:54:0,54,0:0:0:54,0:1916,0:-172.611,-16.2556,0,-172.611,-16.2556,-172.611	1/1:111:0,110,0:0:0:110,0:3866,0:-347.76,-33.1133,0,-347.76,-33.1133,-347.76	1/2:181:0,50,131:0:0:50,131:1757,4574:-501.532,-358.555,-343.503,-143.325,0,-103.89	1/1:178:0,178,0:0:0:178,0:6309,0:-567.863,-53.5833,0,-567.863,-53.5833,-567.863	1/1:95:0,95,0:0:0:95,0:3376,0:-304.042,-28.5979,0,-304.042,-28.5979,-304.042	1/1:140:0,140,0:0:0:140,0:4937,0:-444.017,-42.1442,0,-444.017,-42.1442,-444.017	1/2:185:0,84,101:0:0:84,101:2953,3593:-527.017,-286.653,-261.366,-240.714,0,-210.31	1/1:4:0,4,0:0:0:4,0:136,0:-12.5755,-1.20412,0,-12.5755,-1.20412,-12.5755	1/2:186:0,91,93:0:0:91,93:3205,3276:-516.757,-255.928,-228.534,-260.888,0,-232.892	1/2:55:0,12,43:0:0:12,43:424,1544:-160.308,-125.778,-122.166,-34.8841,0,-21.9398	2/2:2:0,0,2:0:0:0,2:0,70:-6.07817,-6.07817,-6.07817,-0.60206,-0.60206,0	1/1:147:0,147,0:0:0:147,0:5208,0:-468.702,-44.2514,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chr03	29066423	.	T	C	82413.9	PASS	AB=0.445961;ABP=71.7741;AC=135;AF=0.718085;AN=188;AO=4013;CIGAR=1X;DP=5533;DPB=5533;DPRA=0;EPP=8717.13;EPPR=3294.96;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9621;MQMR=59.9822;NS=94;NUMALT=1;ODDS=2.3435;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141628;QR=54079;RO=1516;RPL=4013;RPP=8717.13;RPPR=3294.96;RPR=0;RUN=1;SAF=4013;SAP=8717.13;SAR=0;SRF=1516;SRP=3294.96;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:29,11:29:1044:11:384:-22.4945,0,-81.8738	0/1:36:29,7:29:1036:7:237:-10.822,0,-82.7168	0/1:100:50,50:50:1781:50:1761:-128.668,0,-130.468	1/1:123:0,123:0:0:123:4362:-392.755,-37.0267,0	0/1:33:20,13:20:720:13:460:-31.8014,0,-55.1948	0/1:32:18,14:18:648:14:462:-31.9893,0,-49.0189	0/1:89:38,51:38:1329:51:1811:-136.479,0,-93.1158	0/1:70:35,35:35:1256:35:1225:-89.4771,0,-92.2732	0/1:60:29,31:29:1040:31:1065:-78.0906,0,-75.8526	0/1:55:33,22:33:1179:22:773:-53.3328,0,-89.8606	0/0:14:13,1:13:464:1:32:0,-1.01511,-38.8982	0/1:49:23,26:23:815:26:892:-65.8394,0,-58.9203	0/1:49:24,25:24:860:25:883:-65.037,0,-62.9714	1/1:35:0,35:0:0:35:1208:-109.019,-10.5361,0	0/1:38:16,22:16:572:22:788:-59.8057,0,-40.3743	0/1:38:18,20:18:629:20:700:-51.8843,0,-45.4946	0/1:12:3,9:3:108:9:297:-23.4379,0,-6.46281	1/1:13:0,13:0:0:13:459:-41.6441,-3.91339,0	0/1:14:10,4:10:345:4:143:-9.00703,0,-27.1664	1/1:198:0,198:0:0:198:7006:-630.607,-59.6039,0	1/1:69:0,69:0:0:69:2444:-220.214,-20.7711,0	1/1:64:0,64:0:0:64:2275:-205.012,-19.2659,0	0/1:67:41,26:41:1476:26:932:-64.0299,0,-112.967	0/1:33:20,13:20:701:13:455:-31.348,0,-53.4777	1/1:65:0,65:0:0:65:2292:-206.54,-19.567,0	0/1:178:101,76:101:3606:76:2692:-188.882,0,-271.103	1/1:83:0,83:0:0:83:2956:-266.272,-24.9855,0	0/1:17:6,11:6:216:11:379:-29.323,0,-14.673	1/1:130:0,130:0:0:130:4601:-414.256,-39.1339,0	0/1:44:17,27:17:612:27:952:-72.7485,0,-42.1681	1/1:85:0,85:0:0:85:3017:-271.759,-25.5876,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:129:0,129:0:0:129:4554:-410.031,-38.8329,0	0/1:67:29,38:29:1036:38:1345:-101.179,0,-73.3849	0/1:14:9,5:9:324:5:165:-10.9592,0,-25.2914	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:94:40,54:40:1436:54:1914:-144.239,0,-101.241	1/1:22:0,22:0:0:22:771:-69.7097,-6.62266,0	1/1:119:0,119:0:0:119:4203:-378.45,-35.8226,0	1/1:36:0,36:0:0:36:1256:-113.339,-10.8371,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:78:0,78:0:0:78:2755:-248.191,-23.4803,0	0/1:35:15,20:15:536:20:720:-54.5927,0,-38.0388	1/1:84:0,84:0:0:84:2988:-269.151,-25.2865,0	1/1:125:0,125:0:0:125:4463:-401.792,-37.6288,0	1/1:90:0,90:0:0:90:3212:-289.302,-27.0927,0	0/1:149:122,27:122:4359:27:949:-40.8693,0,-347.631	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:91:44,47:44:1561:47:1668:-123.011,0,-113.386	0/1:32:16,16:16:572:16:561:-41.1842,0,-42.1805	0/1:16:14,2:14:500:2:72:-2.02024,0,-40.5197	1/1:71:0,71:0:0:71:2531:-228.041,-21.3731,0	0/1:15:8,7:8:288:7:237:-17.1436,0,-21.752	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:10:6,4:6:212:4:140:-9.93428,0,-16.4145	0/1:72:42,30:42:1503:30:1076:-75.4787,0,-113.89	0/1:63:36,27:36:1288:27:923:-64.4129,0,-97.2587	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:135:0,135:0:0:135:4784:-430.716,-40.6391,0	1/1:133:2,131:2:72:131:4643:-411.168,-33.2003,0	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	0/1:36:20,16:20:711:16:576:-41.3379,0,-53.4786	1/1:93:0,93:0:0:93:3278:-295.24,-27.9958,0	0/1:134:99,35:99:3512:35:1256:-73.0073,0,-275.952	1/1:27:1,26:1:36:26:886:-76.4494,-4.52954,0	0/1:69:35,34:35:1252:34:1216:-88.9755,0,-92.214	1/1:35:0,35:0:0:35:1224:-110.461,-10.5361,0	0/1:36:21,15:21:756:15:510:-35.3825,0,-57.5301	1/1:200:0,200:0:0:200:7034:-633.124,-60.206,0	0/1:55:35,20:35:1247:20:711:-47.759,0,-95.9774	0/1:109:50,58:50:1773:58:1988:-146.316,0,-126.98	0/1:137:74,63:74:2647:63:2252:-161.702,0,-197.235	0/1:62:23,39:23:819:39:1357:-103.762,0,-55.3677	1/1:67:0,67:0:0:67:2377:-214.185,-20.169,0	0/1:11:9,2:9:324:2:68:-3.14638,0,-26.1945	0/1:49:26,23:26:936:23:802:-57.5163,0,-69.809	1/1:54:0,54:0:0:54:1863:-167.944,-16.2556,0	1/1:168:0,168:0:0:168:5920:-532.913,-50.573,0	0/1:62:41,21:41:1464:21:729:-47.2648,0,-113.392	1/1:26:0,26:0:0:26:911:-82.305,-7.82678,0	0/1:25:12,13:12:423:13:460:-34.2096,0,-30.8793	1/1:54:0,54:0:0:54:1916:-172.715,-16.2556,0	0/1:16:3,13:3:104:13:468:-37.6432,0,-4.88633	0/1:51:21,30:21:752:30:1030:-77.6518,0,-52.6528	0/1:47:26,21:26:932:21:752:-53.8578,0,-70.0505	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:40:24,16:24:839:16:549:-37.6912,0,-63.6272	0/1:37:25,12:25:888:12:432:-28.0831,0,-69.1009	1/1:61:0,60:0:0:60:2104:-189.256,-18.0618,0	1/1:49:1,48:1:36:48:1699:-149.597,-11.1522,0
chr03	29070169	.	G	T	67486.4	PASS	AB=0.473528;ABP=19.4503;AC=128;AF=0.695652;AN=184;AO=3390;CIGAR=1X;DP=4849;DPB=4849;DPRA=6.64973;EPP=7364.3;EPPR=3160.34;GTI=0;LEN=1;MEANALT=1.01099;MQM=45.1027;MQMR=59.7476;NS=92;NUMALT=1;ODDS=0.712101;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121416;QR=52021;RO=1458;RPL=0;RPP=7364.3;RPPR=3169.02;RPR=3390;RUN=1;SAF=3390;SAP=7364.3;SAR=0;SRF=1457;SRP=3160.34;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:19,23:19:676:23:820:-58.6843,0,-48.5216	0/1:46:27,19:27:972:19:665:-43.6334,0,-73.9399	0/1:192:89,103:89:3200:103:3692:-266.585,0,-230.421	1/1:120:0,120:0:0:120:4259:-375.598,-36.1236,0	0/1:62:22,40:22:792:40:1432:-108.537,0,-52.9414	0/1:17:10,7:10:360:7:248:-17.0931,0,-27.5907	0/1:59:33,26:33:1157:26:921:-64.7326,0,-86.6735	0/1:92:51,41:51:1809:41:1472:-101.502,0,-135.393	0/1:78:48,30:48:1716:30:1076:-71.1977,0,-131.174	0/1:58:22,36:22:769:36:1292:-96.5269,0,-52.0689	0/1:35:16,19:16:572:19:684:-50.7222,0,-41.2774	0/1:90:48,42:48:1724:42:1503:-104.15,0,-128.28	0/1:57:34,23:34:1216:23:815:-53.7356,0,-92.5832	1/1:39:0,39:0:0:39:1404:-124.387,-11.7402,0	0/1:58:32,26:32:1148:26:936:-64.7505,0,-86.1655	0/1:52:28,24:28:1004:24:860:-60.4659,0,-75.0215	0/1:31:13,18:13:468:18:644:-47.1434,0,-33.1273	1/1:25:0,25:0:0:25:892:-78.5917,-7.52575,0	0/1:23:12,11:12:428:11:396:-27.6877,0,-31.9351	1/1:104:0,104:0:0:104:3728:-332.45,-31.3071,0	1/1:57:0,57:0:0:57:2036:-178.004,-17.1587,0	1/1:37:0,37:0:0:37:1324:-117.398,-11.1381,0	0/1:54:23,31:23:824:31:1108:-81.9955,0,-58.2277	0/1:49:25,24:25:900:24:856:-61.1371,0,-66.5678	1/1:67:0,67:0:0:67:2392:-210.299,-20.169,0	0/1:115:52,63:52:1857:63:2264:-167.034,0,-132.787	1/1:114:0,114:0:0:114:4088:-359.819,-34.3174,0	0/1:19:9,10:9:324:10:356:-25.981,0,-23.7863	1/1:79:1,78:1:36:78:2780:-245.131,-20.1831,0	0/1:48:33,15:33:1161:15:536:-32.3258,0,-90.3419	1/1:22:0,22:0:0:22:792:-70.7373,-6.62266,0	1/1:7:0,7:0:0:7:252:-22.7105,-2.10721,0	0/1:7:3,4:3:108:4:144:-11.0223,0,-7.96636	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.68992,-0.60206,0	1/1:7:0,7:0:0:7:248:-21.9058,-2.10721,0	1/1:125:0,125:0:0:125:4484:-397.997,-37.6288,0	0/1:38:16,22:16:561:22:792:-58.1205,0,-39.378	0/1:31:18,13:18:648:13:468:-32.1794,0,-49.32	0/1:2:1,1:1:36:1:36:-2.91895,0,-2.99621	0/1:78:42,36:42:1489:36:1280:-89.5644,0,-110.82	1/1:18:0,18:0:0:18:648:-57.3935,-5.41854,0	1/1:92:0,92:0:0:92:3296:-290.391,-27.6948,0	1/1:32:0,32:0:0:32:1152:-102.363,-9.63296,0	1/1:36:0,36:0:0:36:1292:-115.112,-10.8371,0	1/1:50:0,50:0:0:50:1796:-160.496,-15.0515,0	0/1:70:34,36:34:1220:36:1292:-91.8883,0,-88.8055	1/1:76:1,75:1:36:75:2696:-235.683,-19.28,0	1/1:44:0,44:0:0:44:1572:-139.509,-13.2453,0	1/1:56:0,56:0:0:56:2004:-178.943,-16.8577,0	0/1:77:33,44:33:1173:44:1565:-116.558,0,-82.6962	.:.:.:.:.:.:.:.	0/1:65:31,34:31:1112:34:1220:-87.5606,0,-80.8198	0/1:37:25,12:25:892:12:432:-27.2393,0,-69.4322	0/1:7:5,2:5:180:2:72:-4.58271,0,-14.4449	1/1:81:0,81:0:0:81:2908:-256.579,-24.3834,0	0/1:45:22,23:22:792:23:824:-60.2759,0,-58.0589	1/1:6:0,6:0:0:6:212:-19.2752,-1.80618,0	0/1:5:3,2:3:108:2:72:-5.29451,0,-8.57002	0/1:36:13,23:13:468:23:828:-62.1408,0,-31.6222	0/1:73:43,30:43:1544:30:1080:-74.2061,0,-116.907	0/1:4:2,2:2:72:2:72:-5.57282,0,-5.6326	1/1:21:0,21:0:0:21:756:-67.9858,-6.32163,0	1/1:78:2,76:2:68:76:2724:-235.961,-17.0226,0	1/1:31:0,31:0:0:31:1108:-97.8803,-9.33193,0	0/0:23:21,2:21:737:2:72:0,-0.164128,-59.8911	1/1:81:1,80:1:36:80:2872:-250.281,-20.7852,0	0/1:77:54,23:54:1921:23:820:-49.9465,0,-149.949	1/1:21:0,21:0:0:21:756:-65.3979,-6.32163,0	0/1:24:16,8:16:576:8:284:-18.1554,0,-44.9487	1/1:39:0,39:0:0:39:1396:-123.922,-11.7402,0	0/1:7:3,4:3:108:4:144:-11.09,0,-7.96796	1/1:34:0,34:0:0:34:1216:-106.861,-10.235,0	0/1:66:35,31:35:1260:31:1116:-78.1897,0,-93.7298	0/1:90:51,39:51:1813:39:1396:-95.2013,0,-136.311	0/1:115:80,35:80:2872:35:1252:-77.1738,0,-224.098	0/1:65:40,25:40:1402:25:896:-58.7287,0,-106.415	1/1:38:1,37:1:36:37:1324:-112.789,-7.84087,0	0/0:8:8,0:8:265:0:0:0,-2.40824,-24.1715	0/1:89:47,42:47:1665:42:1504:-105.752,0,-122.479	1/1:70:0,70:0:0:70:2508:-220.135,-21.0721,0	1/1:127:1,126:1:36:126:4516:-394.485,-34.6325,0	0/1:40:23,17:23:824:17:612:-42.8877,0,-62.4421	1/1:41:0,41:0:0:41:1472:-129.331,-12.3422,0	0/1:49:21,28:21:756:28:1004:-74.401,0,-53.6168	1/1:104:0,103:0:0:103:3688:-324.697,-31.0061,0	0/1:17:9,8:9:309:8:288:-20.5859,0,-23.0232	0/1:51:29,22:29:1040:22:792:-53.5241,0,-78.5603	0/1:44:18,26:18:644:26:936:-69.4451,0,-45.0428	0/1:16:5,11:5:180:11:396:-30.6437,0,-11.7356	0/1:50:20,30:20:716:30:1080:-79.6151,0,-49.7162	0/1:49:34,15:34:1205:15:536:-33.053,0,-94.0034	1/1:45:0,45:0:0:45:1596:-142.747,-13.5464,0	1/1:91:0,91:0:0:91:3276:-291.707,-27.3937,0
chr03	29074098	.	C	T	53381.6	PASS	AB=0.442804;ABP=64.6128;AC=131;AF=0.696809;AN=188;AO=2622;CIGAR=1X;DP=3851;DPB=3851;DPRA=27.8841;EPP=5696.61;EPPR=2669.58;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.942;MQMR=59.9805;NS=94;NUMALT=1;ODDS=1.62809;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93737;QR=43638;RO=1228;RPL=2622;RPP=5696.61;RPPR=2669.58;RPR=0;RUN=1;SAF=2622;SAP=5696.61;SAR=0;SRF=1228;SRP=2669.58;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:19,2:19:676:2:72:-0.515093,0,-54.8464	0/1:40:20,20:20:716:20:708:-52.0044,0,-52.7265	0/1:59:43,16:43:1544:16:552:-32.2421,0,-121.492	1/1:65:0,65:0:0:65:2319:-208.97,-19.567,0	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:32:20,12:20:701:12:432:-29.5882,0,-53.7788	0/1:53:26,27:26:928:27:959:-70.6708,0,-67.8837	0/1:84:63,21:63:2249:21:752:-42.7197,0,-177.385	0/1:32:28,4:28:1004:4:144:-3.68066,0,-81.0429	0/1:53:26,27:26:919:27:972:-71.8433,0,-67.0716	0/1:27:12,15:12:432:15:536:-40.447,0,-31.0934	0/1:25:5,20:5:180:20:716:-57.242,0,-9.02631	0/1:18:4,14:4:135:14:504:-40.2796,0,-7.06377	1/1:64:0,64:0:0:64:2275:-205.009,-19.2659,0	0/1:21:4,17:4:144:17:597:-47.7351,0,-6.99199	0/1:18:9,9:9:315:9:320:-23.7238,0,-23.2687	0/1:27:6,21:6:216:21:748:-59.5175,0,-11.6627	1/1:24:0,24:0:0:24:860:-77.5918,-7.22472,0	0/1:21:8,13:8:269:13:464:-35.7759,0,-18.2145	1/1:49:0,49:0:0:49:1755:-158.006,-14.7505,0	1/1:40:1,39:1:36:39:1382:-121.08,-8.44293,0	1/1:47:1,46:1:32:46:1652:-145.768,-10.9491,0	0/1:24:13,11:13:468:11:387:-27.9412,0,-35.2349	0/1:86:44,42:44:1550:42:1508:-110.126,0,-113.899	1/1:32:0,32:0:0:32:1135:-102.454,-9.63296,0	0/1:144:91,53:91:3226:53:1904:-128.289,0,-247.212	1/1:78:0,78:0:0:78:2778:-250.261,-23.4803,0	0/1:14:3,11:3:93:11:387:-30.9515,0,-4.46231	1/1:85:0,85:0:0:85:3052:-274.905,-25.5876,0	0/1:51:27,24:27:964:24:837:-60.2916,0,-71.7243	1/1:43:0,43:0:0:43:1531:-137.995,-12.9443,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:83:0,83:0:0:83:2963:-266.903,-24.9855,0	0/1:109:64,45:64:2258:45:1612:-112.553,0,-170.668	0/1:23:4,19:4:140:19:671:-53.7921,0,-6.02089	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:51:27,24:27:959:24:860:-62.3693,0,-71.2729	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	1/1:15:0,15:0:0:15:524:-47.4896,-4.51545,0	1/1:35:0,35:0:0:35:1260:-113.688,-10.5361,0	0/1:29:14,15:14:465:15:536:-39.8449,0,-33.4335	1/1:61:1,60:1:36:60:2152:-190.349,-14.7646,0	1/1:83:0,83:0:0:83:2961:-266.708,-24.9855,0	1/1:85:0,85:0:0:85:3036:-273.471,-25.5876,0	0/1:65:46,19:46:1647:19:684:-42.3234,0,-128.951	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:62:30,32:30:1080:32:1152:-85.3263,0,-78.8494	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:38:27,11:27:957:11:392:-24.1809,0,-75.0047	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/1:71:34,37:34:1220:37:1323:-97.9982,0,-88.7337	0/1:56:28,28:28:995:28:1000:-73.4577,0,-73.0059	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:82:0,82:0:0:82:2948:-265.551,-24.6845,0	1/1:58:1,57:1:36:57:2048:-180.993,-13.8615,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:36:23,13:23:811:13:468:-31.6226,0,-62.4729	1/1:61:1,60:1:36:60:2152:-190.349,-14.7646,0	0/1:63:54,9:54:1927:9:324:-10.541,0,-154.741	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:57:25,32:25:896:32:1138:-85.5686,0,-63.8016	1/1:49:0,49:0:0:49:1739:-156.794,-14.7505,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:39:0,39:0:0:39:1381:-124.587,-11.7402,0	0/1:26:11,15:11:396:15:531:-40.2951,0,-28.156	0/1:90:69,21:69:2457:21:756:-41.2722,0,-194.29	0/1:56:30,26:30:1076:26:936:-67.7018,0,-80.2952	0/1:110:87,23:87:3085:23:828:-41.7308,0,-244.762	1/1:53:1,51:1:36:51:1832:-161.635,-12.3402,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:61:33,28:33:1188:28:1008:-72.6735,0,-88.8658	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:51:18,33:18:629:33:1176:-90.7952,0,-41.5812	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:22:6,16:6:207:16:576:-45.5523,0,-12.3442	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	0/1:14:10,4:10:341:4:140:-8.73016,0,-26.8033	0/1:30:14,16:14:500:16:572:-42.7825,0,-36.3053	0/1:32:9,23:9:312:23:824:-64.8504,0,-18.7824	0/1:19:8,11:8:279:11:396:-30.2632,0,-19.728	0/1:58:13,45:13:464:45:1612:-127.91,0,-24.6378	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:53:0,53:0:0:53:1879:-169.387,-15.9546,0
chr03	29079113	.	G	A	16645.6	PASS	AB=0.347627;ABP=750.786;AC=53;AF=0.281915;AN=188;AO=1299;CIGAR=1X;DP=9103;DPB=9103;DPRA=0.647841;EPP=2823.75;EPPR=16940.5;GTI=10;LEN=1;MEANALT=1.03509;MQM=56.3056;MQMR=59.7977;NS=94;NUMALT=1;ODDS=0.0995198;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46465;QR=277762;RO=7800;RPL=0;RPP=2823.75;RPPR=16940.5;RPR=1299;RUN=1;SAF=1299;SAP=2823.75;SAR=0;SRF=7800;SRP=16940.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:21,6:21:726:6:216:-11.6423,0,-57.5214	0/1:87:41,46:41:1438:46:1614:-118.782,0,-103.519	0/1:124:72,52:72:2580:52:1872:-130.649,0,-195.118	0/0:264:264,0:264:9427:0:0:0,-79.4719,-848.291	0/1:78:57,21:57:1995:21:737:-43.0707,0,-155.948	0/1:35:16,19:16:576:19:684:-51.0983,0,-41.6356	0/1:127:71,56:71:2544:56:1985:-139.558,0,-190.979	0/1:98:68,30:68:2428:30:1080:-67.8562,0,-189.272	0/1:105:76,29:76:2698:29:1025:-60.8573,0,-211.45	0/1:104:62,42:62:2209:42:1504:-104.196,0,-167.766	0/1:35:28,7:28:1008:7:252:-12.4901,0,-80.4995	0/1:108:87,21:87:3113:21:756:-35.7874,0,-247.836	0/1:77:56,20:56:2012:20:720:-41.5216,0,-158.01	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.845	0/1:67:47,20:47:1680:20:720:-44.1712,0,-131.318	0/1:44:36,8:36:1262:8:284:-12.4162,0,-100.633	0/1:37:22,15:22:792:15:540:-37.6256,0,-60.4676	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.282	0/1:18:12,6:12:432:6:216:-14.3516,0,-33.7993	0/0:183:182,0:182:6506:0:0:0,-54.7875,-585.256	0/0:242:242,0:242:8584:0:0:0,-72.8493,-772.544	0/0:241:241,0:241:8514:0:0:0,-72.5482,-766.25	0/1:69:44,25:44:1554:25:900:-60.4912,0,-119.376	0/1:91:50,41:50:1780:41:1476:-105.605,0,-133.089	0/0:134:134,0:134:4800:0:0:0,-40.338,-432.145	0/1:228:108,120:108:3846:120:4271:-315.72,0,-277.58	0/0:304:303,1:303:10716:1:36:0,-87.9921,-960.711	0/1:23:14,9:14:504:9:324:-22.4993,0,-38.7744	0/0:339:339,0:339:12106:0:0:0,-102.049,-1089.33	0/1:70:53,16:53:1904:16:561:-29.657,0,-150.505	0/0:73:73,0:73:2579:0:0:0,-21.9752,-232.354	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:23:18,5:18:648:5:180:-9.62051,0,-51.7266	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.816	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5956	0/0:205:205,0:205:7307:0:0:0,-61.7111,-657.662	0/1:101:33,68:33:1158:68:2420:-187.165,0,-74.1185	0/0:27:26,1:26:902:1:36:0,-4.53324,-77.8958	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:114:86,28:86:3080:28:1004:-56.1796,0,-243.105	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0737	0/0:287:287,0:287:10198:0:0:0,-86.3956,-916.914	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.429	0/0:173:173,0:173:6170:0:0:0,-52.0782,-555.397	0/1:138:91,47:91:3241:47:1688:-110.494,0,-250.348	0/0:177:177,0:177:6323:0:0:0,-53.2823,-569.042	0/0:116:116,0:116:4118:0:0:0,-34.9195,-369.783	0/0:98:98,0:98:3501:0:0:0,-29.5009,-315.296	0/1:114:78,36:78:2762:36:1296:-82.5402,0,-214.505	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:102:80,22:80:2837:22:792:-40.5164,0,-224.842	0/1:31:23,8:23:816:8:288:-16.9068,0,-64.4182	0/1:5:2,3:2:68:3:101:-7.88661,0,-4.95256	0/0:178:178,0:178:6304:0:0:0,-53.5833,-566.813	0/1:55:41,14:41:1461:14:504:-29.0825,0,-115.227	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/1:58:37,21:37:1309:21:756:-50.7383,0,-100.644	0/1:92:54,38:54:1940:38:1368:-95.6528,0,-146.324	0/1:2:1,1:1:36:1:36:-2.99577,0,-2.99621	0/0:173:172,0:172:6107:0:0:0,-51.7772,-549.372	0/0:154:154,0:154:5532:0:0:0,-46.3586,-497.995	0/0:83:83,0:83:2952:0:0:0,-24.9855,-265.912	0/1:60:48,12:48:1705:12:432:-21.1549,0,-135.658	0/0:203:199,4:199:7062:4:140:0,-48.1657,-622.626	0/1:82:43,39:43:1548:39:1400:-100.962,0,-114.929	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:41:23,18:23:828:18:633:-44.8461,0,-62.3956	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/1:20:14,6:14:496:6:216:-13.7675,0,-38.9533	0/0:163:162,1:162:5758:1:36:0,-45.4733,-514.684	0/1:85:65,20:65:2325:20:715:-38.9912,0,-183.902	0/1:105:72,33:72:2549:33:1169:-73.698,0,-198.039	0/1:148:105,43:105:3708:43:1548:-94.9981,0,-289.365	0/1:178:140,38:140:5012:38:1368:-68.5601,0,-397.624	0/0:112:112,0:112:3981:0:0:0,-33.7154,-358.462	1/1:2:0,2:0:0:2:68:-6.42961,-0.60206,0	0/1:132:92,40:92:3255:40:1440:-89.99,0,-252.87	0/0:232:232,0:232:8277:0:0:0,-69.839,-743.716	0/0:341:341,0:341:12153:0:0:0,-102.651,-1093.56	0/1:72:43,29:43:1540:29:1044:-72.4553,0,-116.281	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.324	0/1:44:29,15:29:1036:15:540:-35.6852,0,-80.3086	0/0:160:160,0:160:5748:0:0:0,-48.1648,-517.423	0/1:17:6,11:6:216:11:396:-30.8282,0,-14.673	0/1:48:24,24:24:860:24:864:-62.2553,0,-63.2724	0/1:67:46,21:46:1648:21:746:-46.9417,0,-128.44	0/1:18:14,4:14:504:4:144:-7.8894,0,-40.2796	0/1:46:34,12:34:1216:12:432:-25.3552,0,-95.8668	0/1:40:24,16:24:864:16:572:-39.7213,0,-66.0406	0/0:157:157,0:157:5555:0:0:0,-47.2617,-499.866	0/0:140:139,1:139:4961:1:36:0,-38.5464,-443.038
chr03	29100213	.	A	G	253547	PASS	AB=0.47945;ABP=27.2856;AC=133;AF=0.715054;AN=186;AO=9570;CIGAR=1X;DP=13046;DPB=13046;DPRA=0;EPP=20784;EPPR=7511.96;GTI=2;LEN=1;MEANALT=1.12903;MQM=59.8499;MQMR=59.7877;NS=93;NUMALT=1;ODDS=0.156113;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=337522;QR=122976;RO=3462;RPL=4665;RPP=16.08;RPPR=16.3803;RPR=4905;RUN=1;SAF=4665;SAP=16.08;SAR=4905;SRF=1659;SRP=16.0166;SRR=1803;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:82:44,38:44:1562:38:1317:-94.1401,0,-116.178	0/1:123:58,64:58:2050:64:2245:-165.19,0,-147.683	0/1:206:110,94:110:3898:94:3292:-234.727,0,-289.153	1/1:276:0,276:0:0:276:9755:-877.904,-83.0843,0	0/1:86:44,42:44:1553:42:1485:-108.049,0,-114.168	0/1:79:40,39:40:1423:39:1391:-101.707,0,-104.585	0/1:186:103,83:103:3618:83:2913:-206.405,0,-269.599	0/1:223:129,94:129:4577:94:3304:-230.417,0,-344.938	0/1:212:110,101:110:3898:101:3510:-252.234,0,-287.003	0/1:183:97,86:97:3437:86:3025:-217.391,0,-254.449	0/1:76:37,39:37:1324:39:1388:-102.338,0,-96.5829	0/1:174:77,97:77:2756:97:3398:-253.647,0,-195.861	0/1:117:61,56:61:2149:56:1952:-140.719,0,-158.453	1/1:93:0,93:0:0:93:3267:-294.248,-27.9958,0	0/1:114:56,58:56:2016:58:2027:-148.364,0,-147.395	0/1:99:57,42:57:2035:42:1471:-102.878,0,-153.61	0/1:61:27,34:27:918:34:1189:-88.8803,0,-64.5635	1/1:59:1,58:1:36:58:2045:-180.721,-14.1625,0	0/1:66:35,31:35:1229:31:1104:-79.8008,0,-91.022	1/1:308:0,307:0:0:307:10789:-970.439,-92.4162,0	1/1:259:0,259:0:0:259:9112:-819.996,-77.9668,0	1/1:127:0,127:0:0:127:4434:-399.222,-38.2308,0	0/1:232:107,125:107:3806:125:4453:-331.093,0,-272.891	0/1:81:33,48:33:1169:48:1703:-129.171,0,-81.1272	1/1:144:0,144:0:0:144:5079:-457.25,-43.3483,0	0/1:395:217,177:217:7693:177:6250:-443.626,0,-573.418	1/1:234:0,234:0:0:234:8273:-744.566,-70.441,0	0/1:39:18,21:18:640:21:733:-54.5495,0,-46.1891	1/1:485:1,484:1:36:484:17089:-1534.06,-142.401,0	0/1:180:94,85:94:3337:85:3013:-217.155,0,-246.299	1/1:179:1,178:1:36:178:6277:-561.426,-50.2861,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:13:7,6:7:252:6:207:-15.0517,0,-19.1156	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:23:0,23:0:0:23:803:-72.5875,-6.92369,0	1/1:289:0,289:0:0:289:10199:-917.771,-86.9977,0	0/1:177:99,78:99:3513:78:2773:-196.525,0,-263.084	0/1:66:25,41:25:900:41:1457:-111.556,0,-61.4449	.:.:.:.:.:.:.:.	0/1:216:115,101:115:4112:101:3590:-258.281,0,-305.235	1/1:35:0,35:0:0:35:1223:-110.373,-10.5361,0	1/1:219:0,219:0:0:219:7718:-694.655,-65.9256,0	1/1:95:0,95:0:0:95:3348:-301.491,-28.5979,0	1/1:108:0,106:0:0:106:3727:-335.34,-31.9092,0	1/1:127:0,127:0:0:127:4510:-406.011,-38.2308,0	0/1:197:88,109:88:3137:109:3851:-287.483,0,-223.021	1/1:284:2,281:2:72:281:9938:-887.424,-78.7146,0	1/1:139:2,137:2:72:137:4839:-428.824,-35.0064,0	1/1:152:1,151:1:36:151:5301:-473.576,-42.1583,0	0/1:83:39,44:39:1391:44:1580:-117.505,0,-100.501	1/1:10:0,10:0:0:10:360:-32.7419,-3.0103,0	0/1:166:93,73:93:3319:73:2555:-180.226,0,-248.768	0/1:89:51,38:51:1836:38:1368:-96.6283,0,-138.724	0/1:14:4,10:4:144:10:352:-27.8029,0,-9.0992	1/1:215:0,215:0:0:215:7600:-683.402,-64.7215,0	0/1:88:40,48:40:1428:48:1687:-125.619,0,-102.327	1/1:10:0,10:0:0:10:320:-29.1068,-3.0103,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:134:70,64:70:2470:64:2240:-161.504,0,-182.209	0/1:119:68,51:68:2420:51:1773:-124.025,0,-182.232	0/1:11:2,9:2:72:9:309:-24.8294,0,-3.52539	1/1:272:0,272:0:0:272:9621:-865.457,-81.8802,0	1/1:241:1,239:1:36:239:8429:-754.999,-69.0088,0	1/1:113:1,112:1:36:112:3953:-352.362,-30.4181,0	0/1:117:60,57:60:2101:57:2006:-145.387,0,-154.107	1/1:254:7,247:7:252:247:8767:-765.874,-53.4398,0	0/1:193:129,64:129:4574:64:2256:-145.201,0,-353.69	1/1:55:0,55:0:0:55:1894:-170.727,-16.5567,0	0/1:123:57,66:57:2031:66:2312:-171.306,0,-146.035	1/1:56:0,56:0:0:56:1952:-175.951,-16.8577,0	0/1:24:14,10:14:496:10:336:-23.3385,0,-37.7472	1/1:144:1,143:1:36:143:5024:-448.395,-39.75,0	0/1:182:86,96:86:3037:96:3411:-252.1,0,-218.143	0/1:279:165,113:165:5830:113:4013:-277.458,0,-440.895	0/1:182:87,95:87:3111:95:3382:-249.803,0,-225.424	0/1:159:96,63:96:3418:63:2252:-155.079,0,-259.781	1/1:129:2,126:2:72:126:4400:-389.335,-32.0549,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:174:96,78:96:3429:78:2771:-197.242,0,-256.421	1/1:228:0,227:0:0:227:8019:-721.368,-68.3338,0	1/1:435:0,435:0:0:435:15353:-1381.47,-130.948,0	0/1:80:37,43:37:1320:43:1527:-113.638,0,-95.0195	1/1:96:1,95:1:36:95:3371:-299.989,-25.3006,0	0/1:68:36,32:36:1292:32:1104:-79.191,0,-96.1137	1/1:182:2,180:2:72:180:6356:-565.283,-47.9507,0	0/1:33:12,21:12:424:21:744:-57.3503,0,-28.5624	0/1:165:69,96:69:2446:96:3364:-253.304,0,-170.714	0/1:125:58,67:58:2054:67:2372:-176.103,0,-147.502	0/1:57:34,23:34:1220:23:810:-56.0616,0,-92.9435	0/1:126:64,62:64:2295:62:2169:-157.543,0,-168.881	0/1:123:75,48:75:2664:48:1693:-115.628,0,-202.975	1/1:154:0,154:0:0:154:5454:-490.987,-46.3586,0	1/1:181:1,180:1:36:180:6380:-570.685,-50.8882,0
chr03	29100261	.	C	T	30746.5	PASS	AB=0.534442;ABP=38.3116;AC=53;AF=0.284946;AN=186;AO=1838;CIGAR=1X;DP=6879;DPB=6879;DPRA=0.76496;EPP=3994.18;EPPR=10923.4;GTI=3;LEN=1;MEANALT=1.03509;MQM=59.4576;MQMR=59.6996;NS=93;NUMALT=1;ODDS=0.273545;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64970;QR=179500;RO=5037;RPL=1838;RPP=3994.18;RPPR=10940.7;RPR=0;RUN=1;SAF=0;SAP=3994.18;SAR=1838;SRF=2;SRP=10923.4;SRR=5035;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:18,26:18:644:26:924:-70.2242,0,-45.0453	0/1:81:36,45:36:1258:45:1596:-119.498,0,-89.0946	0/1:126:49,77:49:1722:77:2682:-203.619,0,-117.329	0/0:138:138,0:138:4925:0:0:0,-41.5421,-443.316	0/1:35:15,20:15:532:20:704:-53.1403,0,-37.6731	0/1:33:16,17:16:576:17:604:-44.7428,0,-42.241	0/1:114:53,61:53:1904:61:2160:-158.784,0,-137.309	0/1:115:46,69:46:1644:69:2443:-185.488,0,-113.61	0/1:112:56,56:56:1989:56:1969:-143.744,0,-145.565	0/1:105:47,58:47:1692:58:2049:-153.072,0,-120.959	0/1:35:21,14:21:728:14:504:-35.1597,0,-55.299	0/1:91:51,40:51:1824:40:1400:-98.7894,0,-137.027	0/1:54:24,30:24:860:30:1061:-79.5446,0,-61.4635	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.369	0/1:73:42,31:42:1500:31:1104:-77.6954,0,-113.247	0/1:51:23,28:23:813:28:1004:-75.3141,0,-58.135	0/1:37:21,16:21:737:16:572:-40.6753,0,-55.4426	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.751	0/1:36:14,22:14:504:22:784:-60.0322,0,-34.8601	0/0:190:190,0:190:6781:0:0:0,-57.1957,-610.238	0/0:139:138,0:138:4932:0:0:0,-41.5421,-443.021	0/0:85:85,0:85:3022:0:0:0,-25.5875,-272.19	0/1:108:52,56:52:1872:56:1979:-145.863,0,-135.987	0/1:17:10,7:10:356:7:248:-17.542,0,-27.2606	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.039	0/1:233:108,125:108:3872:125:4441:-329.699,0,-278.523	0/0:137:136,0:136:4846:0:0:0,-40.9401,-435.917	0/1:23:12,11:12:432:11:392:-28.6964,0,-32.2975	0/0:284:284,0:284:10146:0:0:0,-85.4925,-913.052	0/1:89:43,46:43:1514:46:1621:-119.379,0,-109.757	0/0:74:73,1:73:2593:1:36:0,-18.6805,-230.022	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3766	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:165:165,0:165:5897:0:0:0,-49.6699,-530.76	0/1:92:37,55:37:1332:55:1968:-149.683,0,-92.4857	0/1:22:10,12:10:356:12:424:-31.8655,0,-25.7577	.:.:.:.:.:.:.:.	0/1:126:60,66:60:2126:66:2344:-173.282,0,-153.671	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.04	0/0:54:54,0:54:1900:0:0:0,-16.2556,-171.264	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.871	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.837	0/1:119:64,55:64:2273:55:1964:-140.945,0,-168.998	0/0:176:176,0:176:6254:0:0:0,-52.9813,-562.886	0/0:73:72,1:72:2588:1:36:0,-18.3769,-229.56	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.735	0/1:25:15,10:15:517:10:352:-24.4912,0,-39.3285	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7881	0/1:92:37,55:37:1324:55:1913:-144.455,0,-91.767	0/1:51:17,34:17:608:34:1185:-91.5956,0,-39.6986	0/1:12:10,2:10:347:2:72:-3.22436,0,-27.9503	0/0:124:124,0:124:4421:0:0:0,-37.3277,-398.028	0/1:51:30,21:30:1064:21:748:-51.5119,0,-80.3426	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:71:28,43:28:1004:43:1527:-116.217,0,-69.3027	0/1:60:25,35:25:896:35:1244:-94.2005,0,-62.8962	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:148:148,0:148:5290:0:0:0,-44.5524,-475.796	0/0:126:126,0:126:4486:0:0:0,-37.9298,-403.887	0/0:59:59,0:59:2082:0:0:0,-17.7608,-187.644	0/1:55:30,25:30:1038:25:857:-60.8667,0,-77.1296	0/0:140:136,4:136:4847:4:140:0,-29.2054,-423.293	0/1:83:27,56:27:968:56:2004:-155.614,0,-62.4472	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4029	0/1:56:23,33:23:824:33:1146:-86.5831,0,-57.6211	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.811	0/1:8:3,5:3:104:5:176:-13.7744,0,-7.29457	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.404	0/1:92:47,45:47:1665:45:1596:-115.294,0,-122.123	0/1:142:59,83:59:2112:83:2921:-219.91,0,-147.6	0/1:123:58,65:58:2088:65:2300:-170.232,0,-151.156	0/1:71:21,50:21:756:50:1776:-138.43,0,-46.9923	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.255	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:99:46,53:46:1633:53:1849:-136.839,0,-117.45	0/0:124:124,0:124:4399:0:0:0,-37.3277,-396.009	0/0:241:241,0:241:8594:0:0:0,-72.5482,-773.421	0/1:47:31,16:31:1112:16:576:-38.0266,0,-86.2406	0/0:55:53,1:53:1904:1:36:0,-12.9422,-168.099	0/1:31:15,16:15:524:16:572:-42.4815,0,-38.1544	0/0:91:91,0:91:3215:0:0:0,-27.3937,-289.553	0/1:22:15,6:15:536:6:212:-12.747,0,-41.8965	0/1:47:30,17:30:1076:17:600:-40.1726,0,-83.0035	0/1:54:26,28:26:919:28:981:-72.3278,0,-66.739	0/1:22:8,14:8:284:14:485:-37.3497,0,-19.2807	0/1:48:26,22:26:910:22:784:-56.4345,0,-67.7646	0/1:67:22,45:22:788:45:1581:-122.407,0,-51.0758	0/0:72:72,0:72:2535:0:0:0,-21.6742,-228.321	0/0:103:103,0:103:3685:0:0:0,-31.0061,-331.839
chr03	29100281	.	CGGAG	AGGAG,AGGAC	187373	PASS	AB=0.516708,0.475184;ABP=12.8785,24.7805;AC=133,53;AF=0.715054,0.284946;AN=186;AO=6803,1942;CIGAR=1X4M,1X3M1X;DP=8801;DPB=8801.2;DPRA=0,0.700762;EPP=14775.5,4220.01;EPPR=0;GTI=1;LEN=1,5;MEANALT=2.13978,2.52632;MQM=59.9804,59.9181;MQMR=0;NS=93;NUMALT=2;ODDS=8.95503;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,72;PQR=0;PRO=0;QA=242822,68006;QR=0;RO=0;RPL=0,0;RPP=14775.5,4220.01;RPPR=0;RPR=6803,1942;RUN=1,1;SAF=6803,1942;SAP=14775.5,4220.01;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:62:0,35,27:0:0:35,27:1245,935:-177.8,-76.334,-65.7979,-101.817,0,-93.6888	1/2:41:0,25,16:0:0:25,16:900,545:-118.004,-44.5563,-37.0306,-73.7953,0,-68.9788	1/2:156:0,66,89:0:0:66,89:2334,3111:-443.206,-253.108,-233.241,-190.128,0,-163.336	1/1:100:0,100,0:0:0:100,0:3596,0:-323.841,-30.103,0,-323.841,-30.103,-323.841	1/2:70:0,44,26:0:0:44,26:1576,922:-204.001,-75.4709,-62.2256,-128.886,0,-121.059	1/2:47:0,26,21:0:0:26,21:928,736:-135.899,-60.2411,-52.4143,-76.0115,0,-69.6898	1/2:77:0,27,50:0:0:27,50:949,1777:-222.402,-145.16,-137.032,-77.595,0,-62.5435	1/2:118:0,67,51:0:0:67,51:2389,1761:-338.164,-143.418,-123.249,-195.097,0,-179.744	1/2:138:0,80,57:0:0:80,57:2857,2015:-397.084,-164.155,-140.073,-232.973,0,-215.814	1/2:83:0,39,44:0:0:39,44:1389,1534:-238.32,-125.105,-113.365,-113.567,0,-100.321	1/2:51:0,24,26:0:0:24,26:864,896:-143.271,-72.7664,-65.5417,-70.498,0,-62.6712	1/2:131:0,60,70:0:0:60,70:2156,2454:-375.682,-199.791,-181.729,-175.993,0,-154.921	1/2:76:0,37,39:0:0:37,39:1328,1374:-220.546,-112.217,-101.079,-108.684,0,-96.944	1/1:56:0,55,0:0:0:55,0:1961,0:-176.404,-16.5567,0,-176.404,-16.5567,-176.404	1/2:77:0,40,36:0:0:40,36:1436,1292:-222.574,-105.436,-93.3944,-117.185,0,-106.348	1/2:66:0,31,34:0:0:31,34:1112,1193:-187.781,-97.0764,-87.7445,-90.6996,0,-80.4646	1/2:41:0,22,19:0:0:22,19:792,674:-119.894,-55.268,-48.6453,-64.983,0,-59.2634	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/2:33:0,18,15:0:0:18,15:648,514:-94.9516,-42.0687,-36.6501,-53.2333,0,-48.7179	1/1:228:0,227,0:0:0:227,0:8095,0:-728.205,-68.3338,0,-728.205,-68.3338,-728.205	1/1:210:0,207,0:0:0:207,0:7387,0:-664.533,-62.3132,0,-664.533,-62.3132,-664.533	1/1:420:0,417,0:0:0:417,0:14840,0:-1335.01,-125.53,0,-1335.01,-125.53,-1335.01	1/2:239:0,137,99:0:0:137,99:4905,3460:-681.343,-281.338,-240.096,-400.008,0,-370.206	1/2:94:0,48,46:0:0:48,46:1724,1595:-270.633,-129.99,-115.541,-140.996,0,-127.149	1/1:126:0,125,0:0:0:125,0:4453,0:-400.578,-37.6288,0,-400.578,-37.6288,-400.578	1/2:164:0,75,89:0:0:75,89:2665,3114:-470.862,-253.697,-231.12,-217.518,0,-190.726	1/1:221:0,221,0:0:0:221,0:7917,0:-712.552,-66.5276,0,-712.552,-66.5276,-712.552	1/2:42:0,20,22:0:0:20,22:720,779:-122.561,-63.8102,-57.7896,-59.1082,0,-52.4855	1/1:212:0,212,0:0:0:212,0:7593,0:-683.406,-63.8184,0,-683.406,-63.8184,-683.406	1/2:68:0,46,18:0:0:46,18:1626,616:-182.447,-50.0123,-36.1649,-132.46,0,-127.041	1/1:141:0,140,0:0:0:140,0:4983,0:-448.256,-42.1442,0,-448.256,-42.1442,-448.256	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:12:0,5,7:0:0:5,7:180,250:-35.4278,-20.7395,-19.2344,-15.0469,0,-12.9397	1/1:6:0,5,0:0:0:5,0:180,0:-16.1922,-1.50515,0,-16.1922,-1.50515,-16.1922	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:28:0,27,1:0:0:27,1:953,36:-85.7237,-8.12781,0,-82.7861,-4.83057,-82.485	1/1:241:0,239,0:0:0:239,0:8569,0:-770.844,-71.9462,0,-770.844,-71.9462,-770.844	1/2:105:0,52,53:0:0:52,53:1838,1866:-301.955,-152.265,-136.611,-150.043,0,-134.088	1/2:51:0,29,22:0:0:29,22:1044,777:-148.819,-63.6299,-54.9001,-85.5449,0,-78.9223	.:.:.:.:.:.:.:.	1/2:151:0,78,73:0:0:78,73:2770,2576:-435.812,-210.115,-186.635,-226.051,0,-204.076	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/1:121:0,120,0:0:0:120,0:4244,0:-381.778,-36.1236,0,-381.778,-36.1236,-381.778	1/1:67:0,67,0:0:0:67,0:2404,0:-216.616,-20.169,0,-216.616,-20.169,-216.616	1/1:58:0,58,0:0:0:58,0:2076,0:-187.111,-17.4597,0,-187.111,-17.4597,-187.111	1/1:155:0,155,0:0:0:155,0:5515,0:-496.474,-46.6597,0,-496.474,-46.6597,-496.474	1/2:84:0,58,26:0:0:58,26:2076,900:-242.787,-73.4859,-56.0261,-169.651,0,-161.824	1/1:177:0,176,0:0:0:176,0:6248,0:-562.043,-52.9813,0,-562.043,-52.9813,-562.043	1/1:113:0,113,0:0:0:113,0:4019,0:-361.895,-34.0164,0,-361.895,-34.0164,-361.895	1/1:76:0,76,0:0:0:76,0:2713,0:-244.412,-22.8783,0,-244.412,-22.8783,-244.412	1/2:57:0,32,24:0:0:32,24:1148,847:-162.626,-68.984,-59.3511,-93.6564,0,-86.4317	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:41:0,25,16:0:0:25,16:881,564:-118.002,-46.274,-38.7482,-72.0801,0,-67.2636	1/2:71:0,40,30:0:0:40,30:1440,1054:-203.281,-85.7798,-73.7386,-117.497,0,-108.466	1/2:20:0,12,8:0:0:12,8:428,274:-57.4829,-22.5845,-18.9721,-35.2464,0,-32.8382	1/1:201:0,199,1:0:0:199,1:7125,32:-640.966,-59.905,0,-638.388,-57.3466,-638.087	1/2:94:0,53,41:0:0:53,41:1893,1417:-269.435,-115.122,-99.1676,-154.303,0,-141.961	1/1:11:0,11,0:0:0:11,0:381,0:-34.6206,-3.31133,0,-34.6206,-3.31133,-34.6206	1/2:7:0,3,2:0:0:3,2:108,72:-14.7013,-5.88481,-4.98172,-8.82422,0,-8.22216	1/2:95:0,44,51:0:0:44,51:1576,1783:-273.773,-145.241,-131.995,-128.886,0,-113.534	1/2:90:0,48,41:0:0:48,41:1724,1452:-259.05,-118.411,-103.962,-140.771,0,-128.429	1/2:14:0,6,8:0:0:6,8:212,277:-40.1258,-22.8574,-21.0512,-17.6186,0,-15.2104	1/1:180:0,179,1:0:0:179,1:6353,36:-571.498,-53.8844,0,-568.561,-50.5871,-568.26	1/1:93:0,93,0:0:0:93,0:3340,0:-300.816,-27.9958,0,-300.816,-27.9958,-300.816	1/1:66:0,66,0:0:0:66,0:2364,0:-213.018,-19.868,0,-213.018,-19.868,-213.018	1/2:78:0,27,48:0:0:27,48:968,1645:-212.498,-133.541,-125.413,-78.9678,0,-64.5184	1/1:172:0,172,0:0:0:172,0:6144,0:-552.786,-51.7772,0,-552.786,-51.7772,-552.786	1/2:146:0,53,90:0:0:53,90:1866,3163:-409.332,-257.426,-241.471,-151.899,0,-124.806	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/2:41:0,22,19:0:0:22,19:788,678:-119.894,-55.6293,-49.0066,-64.6221,0,-58.9026	1/1:38:0,37,0:0:0:37,0:1332,0:-119.881,-11.1381,0,-119.881,-11.1381,-119.881	1/2:25:0,15,10:0:0:15,10:536,348:-72.3516,-28.6438,-24.1283,-44.0594,0,-41.0491	1/1:158:0,155,0:0:0:155,0:5546,0:-498.927,-46.6597,0,-498.927,-46.6597,-498.927	1/2:76:0,37,38:0:0:37,38:1324,1321:-215.357,-107.387,-96.2487,-107.964,0,-96.5245	1/2:138:0,78,59:0:0:78,59:2721,2031:-386.244,-164.942,-141.462,-221.288,0,-203.527	1/2:96:0,70,25:0:0:70,25:2508,864:-274.74,-70.1892,-49.1171,-204.54,0,-197.015	1/2:93:0,52,39:0:0:52,39:1815,1383:-260.289,-112.669,-97.0158,-147.612,0,-135.872	1/1:100:0,100,0:0:0:100,0:3596,0:-323.845,-30.103,0,-323.845,-30.103,-323.845	1/2:10:0,2,8:0:0:2,8:72,281:-29.0987,-23.2221,-22.6201,-6.23466,0,-3.82642	1/2:76:0,45,31:0:0:45,31:1616,1082:-220.187,-88.3564,-74.81,-132.184,0,-122.852	1/1:118:0,118,0:0:0:118,0:4232,0:-381.059,-35.5215,0,-381.059,-35.5215,-381.059	1/1:280:0,279,0:0:0:279,0:9978,0:-897.594,-83.9874,0,-897.594,-83.9874,-897.594	1/2:57:0,26,31:0:0:26,31:932,1083:-164.462,-88.444,-80.6173,-76.3721,0,-67.0401	1/1:62:0,62,0:0:0:62,0:2193,0:-197.634,-18.6639,0,-197.634,-18.6639,-197.634	1/2:41:0,17,23:0:0:17,23:604,818:-115.886,-66.6682,-61.5507,-49.2229,0,-42.2993	1/1:150:0,144,5:0:0:144,5:5161,166:-464.291,-43.3483,0,-450.863,-29.943,-449.358	1/2:30:0,12,18:0:0:12,18:413,621:-84.3347,-50.7936,-47.1812,-33.8855,0,-28.4669	1/2:84:0,41,42:0:0:41,42:1476,1478:-240.749,-120.311,-107.969,-120.434,0,-107.791	1/2:82:0,43,38:0:0:43,38:1531,1355:-235.233,-110.452,-97.5073,-124.778,0,-113.339	1/2:38:0,21,17:0:0:21,17:752,597:-110.271,-48.9409,-42.6193,-61.6846,0,-56.5671	1/2:99:0,55,43:0:0:55,43:1968,1509:-283.322,-122.837,-106.28,-160.518,0,-147.574	1/2:94:0,35,59:0:0:35,59:1245,2073:-270.487,-169.024,-158.488,-101.817,0,-84.0559	1/1:119:0,119,0:0:0:119,0:4234,0:-381.239,-35.8226,0,-381.239,-35.8226,-381.239	1/1:93:0,92,0:0:0:92,0:3289,0:-295.863,-27.6948,0,-295.863,-27.6948,-295.863
chr03	29100353	.	C	T	19334.4	PASS	AB=0.427011;ABP=164.039;AC=52;AF=0.27957;AN=186;AO=1497;CIGAR=1X;DP=6661;DPB=6661;DPRA=1.11533;EPP=3245.02;EPPR=11207.8;GTI=1;LEN=1;MEANALT=1.04762;MQM=59.9633;MQMR=59.9864;NS=93;NUMALT=1;ODDS=1.15374;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49235;QR=179660;RO=5160;RPL=2;RPP=3236.36;RPPR=11207.8;RPR=1495;RUN=1;SAF=1;SAP=3245.02;SAR=1496;SRF=0;SRP=11207.8;SRR=5160;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:3,3:3:104:3:104:-7.89663,0,-7.89663	0/1:107:67,40:67:2349:40:1338:-88.5014,0,-179.459	0/1:57:35,22:35:1206:22:710:-47.0444,0,-91.6825	0/0:162:162,0:162:5691:0:0:0,-48.7669,-512.316	0/1:30:17,13:17:579:13:426:-29.6248,0,-43.4001	0/1:53:29,24:29:1024:24:789:-55.3587,0,-76.518	0/1:63:31,32:31:1079:32:1086:-79.0786,0,-78.4528	0/1:78:60,18:60:2131:18:595:-30.3741,0,-168.578	0/1:53:11,42:11:396:42:1381:-108.622,0,-20.0282	0/1:113:65,48:65:2249:48:1532:-104.142,0,-168.655	0/1:81:45,36:45:1566:36:1166:-80.8475,0,-116.846	0/1:54:24,30:24:806:30:1006:-74.5888,0,-56.5921	0/1:55:27,28:27:956:28:939:-68.2566,0,-69.7991	0/0:131:131,0:131:4498:0:0:0,-39.4349,-404.998	0/1:54:33,21:33:1155:21:680:-45.2503,0,-88	0/1:65:36,29:36:1240:29:955:-66.6843,0,-92.3318	0/1:85:50,35:50:1751:35:1152:-78.3864,0,-131.658	0/0:57:57,0:57:1961:0:0:0,-17.1587,-176.762	0/1:45:33,12:33:1168:12:416:-24.2253,0,-91.8809	0/0:78:78,0:78:2741:0:0:0,-23.4803,-246.934	0/0:104:104,0:104:3672:0:0:0,-31.3071,-330.685	0/0:105:104,1:104:3609:1:27:0,-28.9084,-322.319	0/1:41:13,28:13:464:28:939:-72.4743,0,-29.7553	0/1:62:40,22:40:1420:22:715:-45.9868,0,-109.434	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/1:171:119,51:119:4187:51:1699:-101.658,0,-325.478	0/0:169:169,0:169:5924:0:0:0,-50.8741,-533.277	0/1:23:14,9:14:484:9:286:-19.1274,0,-36.9648	0/0:138:137,1:137:4834:1:36:0,-37.9439,-431.62	0/1:182:133,49:133:4606:49:1629:-92.1028,0,-359.925	0/0:111:110,1:110:3816:1:32:0,-30.215,-340.442	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:3,7:3:104:7:221:-17.1895,0,-6.69251	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:196:195,0:195:6747:0:0:0,-58.7008,-606.965	0/1:100:66,34:66:2310:34:1119:-70.904,0,-178.056	0/1:102:59,43:59:2034:43:1414:-96.8408,0,-152.625	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:94:57,37:57:2009:37:1246:-84.141,0,-152.785	0/0:35:35,0:35:1224:0:0:0,-10.536,-110.464	0/0:98:97,1:97:3377:1:36:0,-25.9027,-300.551	0/0:87:86,1:86:2969:1:32:0,-22.9903,-264.247	0/0:49:49,0:49:1693:0:0:0,-14.7505,-152.651	0/0:30:30,0:30:1046:0:0:0,-9.0309,-94.4484	0/1:50:31,19:31:1069:19:625:-41.5094,0,-81.4638	0/0:82:81,1:81:2799:1:36:0,-21.0862,-248.552	0/0:77:77,0:77:2681:0:0:0,-23.1793,-241.535	0/0:88:87,1:87:3022:1:36:0,-22.8924,-268.612	0/1:110:62,48:62:2200:48:1618:-112.79,0,-165.153	0/0:7:7,0:7:224:0:0:0,-2.10721,-20.4728	0/1:71:42,29:42:1457:29:971:-66.3199,0,-110.049	0/1:56:40,16:40:1384:16:544:-32.4248,0,-107.996	0/1:12:7,5:7:252:5:154:-10.5524,0,-19.4166	0/0:79:78,1:78:2729:1:27:0,-21.0816,-243.152	0/1:13:4,9:4:140:9:301:-23.5003,0,-9.03119	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:15:9,6:9:298:6:195:-13.3539,0,-22.6262	0/1:68:39,29:39:1358:29:954:-65.6903,0,-102.045	0/1:130:59,71:59:2018:71:2259:-164.431,0,-142.754	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:117:116,1:116:4040:1:34:0,-31.8216,-360.39	0/0:182:182,0:182:6346:0:0:0,-54.7875,-571.244	0/0:94:94,0:94:3239:0:0:0,-28.2968,-291.736	0/1:25:20,5:20:707:5:172:-8.29222,0,-56.4288	0/0:110:109,1:109:3823:1:36:0,-29.515,-340.67	0/1:82:30,52:30:1053:52:1674:-126.253,0,-70.3941	0/0:41:41,0:41:1429:0:0:0,-12.3422,-128.903	0/1:55:34,21:34:1178:21:705:-47.206,0,-89.7661	0/0:77:77,0:77:2625:0:0:0,-23.1793,-236.495	0/1:11:6,5:6:212:5:172:-12.5066,0,-16.1135	0/0:65:65,0:65:2300:0:0:0,-19.5669,-207.262	0/1:36:23,13:23:799:13:452:-30.174,0,-61.3905	0/1:115:66,49:66:2304:49:1587:-108.491,0,-173.002	0/1:78:47,31:47:1659:31:1022:-68.7986,0,-126.116	0/1:80:31,49:31:1059:49:1624:-122.36,0,-71.5308	0/0:78:78,0:78:2717:0:0:0,-23.4803,-244.773	0/1:16:10,6:10:338:6:190:-12.5954,0,-25.9295	0/1:71:45,25:45:1559:25:828:-53.5394,0,-119.312	0/0:48:48,0:48:1672:0:0:0,-14.4494,-150.764	0/0:104:104,0:104:3630:0:0:0,-31.3071,-326.907	0/1:102:57,44:57:1977:44:1434:-98.7187,0,-147.577	0/0:60:60,0:60:2063:0:0:0,-18.0618,-185.937	0/1:79:43,36:43:1520:36:1140:-79.1068,0,-113.312	0/0:173:172,1:172:5911:1:27:0,-49.3784,-529.415	0/1:46:25,21:25:867:21:706:-50.0063,0,-64.4974	0/1:65:34,31:34:1195:31:1031:-73.5229,0,-88.2876	0/1:60:38,22:38:1335:22:702:-45.4196,0,-102.387	0/1:60:30,30:30:1063:30:959:-68.5428,0,-77.919	0/1:126:72,54:72:2471:54:1755:-120.293,0,-184.584	0/1:64:17,47:17:595:47:1559:-121.327,0,-34.6108	0/0:19:19,0:19:658:0:0:0,-5.71957,-59.5413	0/0:92:92,0:92:3168:0:0:0,-27.6948,-285.349
chr03	29100378	.	T	C	32499	PASS	AB=0.484758;ABP=11.1521;AC=53;AF=0.284946;AN=186;AO=1969;CIGAR=1X;DP=7364;DPB=7364;DPRA=1.29967;EPP=4261.29;EPPR=11609.8;GTI=1;LEN=1;MEANALT=1.0303;MQM=59.9492;MQMR=59.9842;NS=93;NUMALT=1;ODDS=2.26891;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70261;QR=193063;RO=5393;RPL=2;RPP=4261.29;RPPR=11609.8;RPR=1967;RUN=1;SAF=0;SAP=4278.64;SAR=1969;SRF=0;SRP=11713.8;SRR=5393;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:125:69,56:69:2460:56:1997:-142.373,0,-184.026	0/1:64:38,26:38:1360:26:936:-65.2935,0,-103.435	0/0:169:168,1:168:6002:1:36:0,-47.2758,-536.685	0/1:36:16,20:16:576:20:691:-51.6702,0,-41.3379	0/1:67:32,35:32:1148:35:1252:-92.8161,0,-83.4608	0/1:83:32,51:32:1144:51:1832:-140.172,0,-78.284	0/1:82:62,20:62:2228:20:706:-39.176,0,-176.099	0/1:66:11,55:11:396:55:1976:-158.247,0,-16.1148	0/1:136:68,68:68:2436:68:2409:-176.123,0,-178.285	0/1:94:52,42:52:1853:42:1498:-106.812,0,-138.751	0/1:64:27,37:27:960:37:1328:-100.556,0,-67.4504	0/1:66:29,36:29:1040:36:1296:-97.1022,0,-74.0745	0/0:141:140,1:140:5012:1:36:0,-38.847,-447.624	0/1:60:34,26:34:1224:26:919:-64.9632,0,-92.4052	0/1:76:36,40:36:1292:40:1436:-106.659,0,-93.7055	0/1:101:53,47:53:1908:47:1680:-121.092,0,-141.603	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:55:36,19:36:1273:19:684:-45.3337,0,-98.3143	0/0:82:82,0:82:2921:0:0:0,-24.6845,-263.124	0/0:107:106,1:106:3789:1:36:0,-28.6119,-337.609	0/0:111:110,1:110:3948:1:36:0,-29.8161,-351.912	0/1:49:13,36:13:468:36:1292:-101.833,0,-27.7092	0/1:66:40,26:40:1432:26:921:-63.3372,0,-109.31	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:190:120,70:120:4308:70:2501:-168.145,0,-330.7	0/0:176:176,0:176:6308:0:0:0,-52.9813,-567.812	0/1:24:13,11:13:464:11:383:-27.5776,0,-34.8728	0/0:144:144,0:144:5153:0:0:0,-43.3483,-463.909	0/1:192:136,56:136:4861:56:1999:-122.366,0,-379.845	0/0:117:116,1:116:4133:1:36:0,-31.6222,-368.556	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:213:213,0:213:7635:0:0:0,-64.1194,-687.185	0/1:127:69,58:69:2465:58:2064:-147.8,0,-183.872	0/1:120:62,58:62:2228:58:2067:-150.177,0,-164.66	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:102:59,43:59:2105:43:1514:-105.844,0,-159.012	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:94:94,0:94:3369:0:0:0,-28.2968,-303.424	0/0:93:93,0:93:3310:0:0:0,-27.9958,-298.116	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:62:32,30:32:1133:30:1065:-77.4959,0,-83.6128	0/0:88:87,1:87:3132:1:36:0,-22.8924,-278.506	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:90:89,1:89:3204:1:36:0,-23.4944,-284.97	0/1:128:64,64:64:2296:64:2285:-167.378,0,-168.369	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:77:43,34:43:1544:34:1224:-87.2877,0,-116.074	0/1:60:38,22:38:1364:22:788:-53.183,0,-104.999	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	0/0:83:82,1:82:2932:1:36:0,-21.3872,-260.516	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:16:11,5:11:392:5:180:-11.7356,0,-30.8036	0/1:81:41,40:41:1476:40:1418:-103.532,0,-108.734	0/1:149:59,90:59:2120:90:3208:-244.085,0,-146.215	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:117:117,0:117:4189:0:0:0,-35.2205,-377.187	0/0:187:186,1:186:6665:1:36:0,-52.6943,-596.326	0/0:95:95,0:95:3382:0:0:0,-28.5978,-304.593	0/1:28:21,7:21:756:7:252:-14.6001,0,-59.9384	0/0:113:112,1:112:4005:1:36:0,-30.4181,-357.04	0/1:91:28,63:28:1000:63:2241:-174.5,0,-62.9216	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:64:33,31:33:1184:31:1093:-79.4117,0,-87.6024	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/1:45:26,19:26:936:19:684:-48.344,0,-71.0131	0/1:132:69,63:69:2472:63:2264:-164.286,0,-182.998	0/1:91:51,40:51:1836:40:1436:-102.142,0,-138.127	0/1:94:30,64:30:1080:64:2300:-178.964,0,-69.2164	0/0:81:80,1:80:2864:1:36:0,-20.7852,-254.399	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:75:45,30:45:1620:30:1076:-74.5756,0,-123.513	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:112:112,0:112:4009:0:0:0,-33.7154,-360.997	0/1:113:61,52:61:2192:52:1863:-133.932,0,-163.529	0/0:61:61,0:61:2167:0:0:0,-18.3628,-195.296	0/1:96:49,47:49:1764:47:1679:-122.498,0,-130.145	0/0:181:180,1:180:6423:1:36:0,-50.8882,-574.556	0/1:50:25,25:25:900:25:887:-65.0966,0,-66.2695	0/1:86:38,48:38:1349:48:1724:-129.557,0,-95.8197	0/1:75:40,35:40:1436:35:1252:-90.4078,0,-106.96	0/1:68:30,38:30:1076:38:1336:-100.067,0,-76.6828	0/1:146:81,65:81:2889:65:2309:-164.119,0,-216.165	0/1:74:19,55:19:680:55:1944:-152.957,0,-39.2529	0/0:38:38,0:38:1330:0:0:0,-11.4391,-119.996	0/0:98:97,1:97:3492:1:36:0,-25.9027,-310.891
chr03	29101203	.	C	T	33258.1	PASS	AB=0.496271;ABP=3.49621;AC=52;AF=0.276596;AN=188;AO=2000;CIGAR=1X;DP=7982;DPB=7982;DPRA=0.896867;EPP=4319.94;EPPR=12862.8;GTI=0;LEN=1;MEANALT=1;MQM=59.9875;MQMR=59.9943;NS=94;NUMALT=1;ODDS=5.75956;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71119;QR=213132;RO=5982;RPL=1997;RPP=4319.94;RPPR=12862.8;RPR=3;RUN=1;SAF=2000;SAP=4345.96;SAR=0;SRF=5982;SRP=12992.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:59:30,29:30:1063:29:1040:-76.1536,0,-78.2201	0/1:91:43,48:43:1548:48:1711:-126.881,0,-112.219	0/0:155:154,1:154:5499:1:36:0,-43.0614,-491.437	0/1:64:42,22:42:1508:22:784:-51.618,0,-116.749	0/1:39:19,20:19:680:20:716:-53.0275,0,-49.789	0/1:120:59,61:59:2116:61:2142:-156.85,0,-154.585	0/1:89:43,46:43:1531:46:1636:-120.737,0,-111.291	0/1:74:35,39:35:1243:39:1392:-103.303,0,-89.8976	0/1:62:35,27:35:1256:27:968:-68.7735,0,-94.6814	0/1:61:31,30:31:1099:30:1062:-77.5271,0,-80.8566	0/1:110:53,57:53:1876:57:2044:-151.118,0,-136.003	0/1:74:39,35:39:1372:35:1232:-88.9059,0,-101.5	0/0:87:87,0:87:3100:0:0:0,-26.1896,-279.226	0/1:70:28,42:28:999:42:1482:-112.601,0,-69.1524	0/1:78:40,38:40:1424:38:1351:-98.4093,0,-104.977	0/1:42:20,22:20:716:22:792:-58.9624,0,-52.1245	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/1:52:28,24:28:1004:24:846:-60.8042,0,-75.0223	0/0:141:141,0:141:4990:0:0:0,-42.4452,-449.248	0/0:152:152,0:152:5401:0:0:0,-45.7566,-486.221	0/0:180:180,0:180:6444:0:0:0,-54.1854,-580.047	0/1:115:55,60:55:1957:60:2152:-159.329,0,-141.785	0/1:51:34,17:34:1224:17:600:-38.9767,0,-95.1145	0/0:76:76,0:76:2714:0:0:0,-22.8783,-244.503	0/1:176:73,103:73:2604:103:3675:-277.972,0,-181.628	0/0:303:303,0:303:10787:0:0:0,-91.2121,-970.737	0/1:33:21,12:21:752:12:420:-28.2,0,-58.0723	0/0:243:243,0:243:8676:0:0:0,-73.1503,-780.833	0/1:103:53,50:53:1900:50:1762:-127.857,0,-140.272	0/0:111:110,1:110:3908:1:36:0,-29.8161,-348.315	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:223:223,0:223:7943:0:0:0,-67.1297,-714.896	0/1:130:67,63:67:2400:63:2260:-164.529,0,-177.123	0/1:68:41,27:41:1468:27:968:-66.9673,0,-111.946	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:105:56,49:56:2000:49:1744:-125.636,0,-148.666	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:110:110,0:110:3935:0:0:0,-33.1133,-354.342	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:66:66,0:66:2327:0:0:0,-19.868,-209.688	0/0:123:123,0:123:4342:0:0:0,-37.0267,-390.955	0/1:105:53,52:53:1900:52:1849:-135.073,0,-139.67	0/0:120:119,1:119:4253:1:32:0,-32.9243,-379.748	0/0:106:106,0:106:3747:0:0:0,-31.9092,-337.429	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:153:80,73:80:2852:73:2594:-187.652,0,-210.858	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:138:77,61:77:2759:61:2169:-153.933,0,-207.009	0/1:42:21,21:21:720:21:752:-55.363,0,-52.4723	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	0/0:101:101,0:101:3583:0:0:0,-30.404,-322.677	0/1:80:40,40:40:1410:40:1413:-103.383,0,-103.113	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:15:4,11:4:144:11:392:-31.1046,0,-8.79817	0/1:100:51,49:51:1828:49:1747:-127.411,0,-134.698	0/1:133:69,64:69:2445:64:2270:-164.525,0,-180.267	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:144:144,0:144:5136:0:0:0,-43.3483,-462.381	0/0:116:116,0:116:4104:0:0:0,-34.9195,-369.545	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:65:35,30:35:1256:30:1076:-77.5859,0,-93.7783	0/0:153:153,0:153:5453:0:0:0,-46.0576,-490.899	0/1:113:49,64:49:1747:64:2281:-171.534,0,-123.497	0/0:43:43,0:43:1521:0:0:0,-12.9443,-136.553	0/1:47:34,13:34:1224:13:458:-27.4057,0,-96.3186	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	0/0:152:152,0:152:5414:0:0:0,-45.7566,-487.392	0/1:64:31,33:31:1108:33:1152:-84.7174,0,-80.7651	0/1:194:105,89:105:3726:89:3184:-228.384,0,-277.143	0/1:131:58,73:58:2061:73:2616:-196.253,0,-146.324	0/1:113:51,62:51:1819:62:2216:-165.688,0,-129.974	0/0:57:57,0:57:2008:0:0:0,-17.1587,-180.991	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:71:27,44:27:968:44:1572:-120.398,0,-66.0642	0/0:119:119,0:119:4213:0:0:0,-35.8226,-379.351	0/0:136:135,1:135:4833:1:36:0,-37.3418,-431.524	0/1:44:30,14:30:1076:14:482:-30.4607,0,-83.9075	0/0:78:78,0:78:2780:0:0:0,-23.4803,-250.442	0/1:40:17,23:17:593:23:824:-62.4421,0,-41.6535	0/0:123:123,0:123:4366:0:0:0,-37.0267,-393.114	0/1:20:15,5:15:540:5:176:-10.1644,0,-42.9159	0/1:71:40,31:40:1423:31:1061:-74.419,0,-106.994	0/1:82:37,45:37:1328:45:1591:-118.795,0,-95.1378	0/1:56:30,26:30:1068:26:923:-66.5291,0,-79.5744	0/1:125:62,63:62:2219:63:2239:-164.145,0,-162.345	0/1:73:29,44:29:1035:44:1559:-118.625,0,-71.4879	0/0:127:127,0:127:4521:0:0:0,-38.2308,-407.059	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041
chr03	29101274	.	G	A	41083.9	PASS	AB=0.498649;ABP=3.08655;AC=51;AF=0.277174;AN=184;AO=2411;CIGAR=1X;DP=9543;DPB=9543;DPRA=1.08302;EPP=5108.95;EPPR=15037.2;GTI=2;LEN=1;MEANALT=1.0339;MQM=59.9967;MQMR=59.9892;NS=92;NUMALT=1;ODDS=0.656299;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86095;QR=255009;RO=7130;RPL=15;RPP=5108.95;RPPR=15028.7;RPR=2396;RUN=1;SAF=0;SAP=5238.43;SAR=2411;SRF=1;SRP=15476.9;SRR=7129;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:6,14:6:216:14:496:-38.9531,0,-13.7699	0/1:148:80,68:80:2834:68:2432:-174.583,0,-210.744	0/1:104:51,53:51:1828:53:1883:-138.441,0,-133.494	0/0:255:255,0:255:9136:0:0:0,-76.7626,-822.212	0/1:93:51,42:51:1814:42:1489:-106.307,0,-135.544	0/1:80:43,37:43:1516:37:1315:-94.5686,0,-112.648	0/1:185:108,77:108:3880:77:2768:-193.67,0,-293.703	0/1:149:79,70:79:2840:70:2502:-180.579,0,-210.984	0/1:49:21,28:21:752:28:999:-75.474,0,-53.2558	0/1:122:61,61:61:2180:61:2170:-158.84,0,-159.741	0/1:26:17,9:17:603:9:324:-21.6791,0,-46.7727	0/1:75:45,30:45:1594:30:1033:-70.6966,0,-121.172	0/1:73:39,34:39:1383:34:1211:-87.3203,0,-102.793	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.839	0/1:79:32,47:32:1148:47:1682:-127.885,0,-79.8485	0/1:56:28,28:28:1004:28:978:-71.4735,0,-73.8182	0/1:63:38,25:38:1359:25:891:-61.5439,0,-103.645	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.882	0/0:184:184,0:184:6588:0:0:0,-55.3895,-593.001	0/0:180:179,1:179:6412:1:36:0,-50.5871,-573.569	0/1:95:56,39:56:2008:39:1372:-95.178,0,-152.395	0/1:204:102,102:102:3656:102:3664:-268.552,0,-267.834	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/1:394:191,203:191:6823:203:7245:-533.497,0,-495.536	0/0:142:142,0:142:5050:0:0:0,-42.7463,-454.645	0/1:51:25,26:25:900:26:927:-68.3938,0,-65.9685	0/0:290:290,0:290:10384:0:0:0,-87.2987,-934.481	0/1:165:87,78:87:3116:78:2796:-202.21,0,-230.978	0/0:172:171,1:171:6102:1:36:0,-48.1789,-545.684	.:.:.:.:.:.:.:.	0/1:9:2,7:2:72:7:244:-19.5902,0,-4.12745	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4238	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:222:222,0:222:7949:0:0:0,-66.8287,-715.431	0/1:247:137,110:137:4850:110:3919:-278.549,0,-362.302	0/1:52:23,29:23:815:29:1044:-78.6212,0,-58.0172	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:145:70,75:70:2508:75:2677:-197.524,0,-182.323	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:130:130,0:130:4655:0:0:0,-39.1339,-419.111	0/0:63:63,0:63:2259:0:0:0,-18.9649,-202.209	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:117:117,0:117:4181:0:0:0,-35.2205,-376.471	0/1:143:67,76:67:2395:76:2720:-201.996,0,-172.759	0/0:216:215,1:215:7673:1:36:0,-61.4242,-687.008	0/0:143:141,1:141:5056:1:36:0,-39.4329,-451.66	0/0:135:135,0:135:4828:0:0:0,-40.639,-434.675	0/1:236:128,108:128:4591:108:3871:-277.541,0,-342.31	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:108:46,62:46:1656:62:2202:-165.931,0,-116.817	0/1:37:20,17:20:716:17:608:-43.9139,0,-53.6296	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:107:107,0:107:3810:0:0:0,-32.2102,-343.098	0/1:59:23,36:23:824:36:1288:-98.4628,0,-56.7225	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:90:49,41:49:1760:41:1459:-104.513,0,-131.591	0/1:93:44,49:44:1584:49:1755:-130.237,0,-114.856	.:.:.:.:.:.:.:.	0/0:249:249,0:249:8905:0:0:0,-74.9565,-801.433	0/0:326:323,3:323:11571:3:108:0,-88.0606,-1031.18	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:87:31,56:31:1076:56:2008:-154.804,0,-70.9558	0/0:162:161,1:161:5759:1:27:0,-46.0671,-515.726	0/1:67:28,39:28:1004:39:1384:-104.69,0,-70.5069	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/1:87:35,52:35:1248:52:1851:-140.679,0,-86.4353	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/1:11:10,1:10:347:1:36:-0.286945,0,-28.2523	0/0:108:108,0:108:3867:0:0:0,-32.5112,-348.224	0/1:52:26,26:26:928:26:932:-68.5453,0,-68.1847	0/1:157:83,73:83:2962:73:2604:-187.436,0,-219.64	0/1:189:83,106:83:2969:106:3803:-285.572,0,-210.546	0/1:124:49,75:49:1756:75:2677:-203.846,0,-120.996	0/0:92:90,2:90:3220:2:72:0,-20.858,-283.186	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:100:53,47:53:1895:47:1692:-122.464,0,-140.724	0/0:119:119,0:119:4249:0:0:0,-35.8226,-382.588	0/0:281:281,0:281:10056:0:0:0,-84.5894,-904.975	0/1:119:63,56:63:2244:56:2001:-144.54,0,-166.399	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:83:42,41:42:1512:41:1476:-108.151,0,-111.389	0/0:154:154,0:154:5536:0:0:0,-46.3586,-498.362	0/1:42:22,20:22:768:20:720:-52.4855,0,-56.7944	0/1:60:34,26:34:1224:26:936:-66.4977,0,-92.4052	0/1:52:26,26:26:928:26:936:-68.9059,0,-68.1847	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/1:38:23,15:23:820:15:540:-37.4974,0,-62.6834	0/1:57:19,38:19:684:38:1360:-105.542,0,-44.7316	0/0:189:188,1:188:6723:1:36:0,-53.2964,-601.502	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813
chr03	29101276	.	GTCTT	GTCTC	149133	PASS	AB=0.4874;ABP=9.74093;AC=133;AF=0.722826;AN=184;AO=7041;CIGAR=4M1X;DP=9575;DPB=9575;DPRA=0;EPP=14989.9;EPPR=5192.84;GTI=1;LEN=1;MEANALT=1.45652;MQM=59.9896;MQMR=59.9964;NS=92;NUMALT=1;ODDS=1.55584;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251514;QR=87819;RO=2489;RPL=7007;RPP=14998.5;RPPR=5192.84;RPR=34;RUN=1;SAF=1;SAP=15283.7;SAR=7040;SRF=0;SRP=5407.81;SRR=2489;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:16,6:16:559:6:216:-13.1679,0,-44.0155	0/1:150:72,78:72:2513:78:2795:-206.635,0,-181.27	0/1:105:55,50:55:1942:50:1775:-128.424,0,-143.447	1/1:247:0,247:0:0:247:8856:-797.023,-74.3544,0	0/1:96:46,49:46:1618:49:1737:-127.655,0,-116.949	0/1:84:38,45:38:1337:45:1590:-118.044,0,-95.2844	0/1:187:77,109:77:2695:109:3903:-295.111,0,-186.444	0/1:148:69,78:69:2439:78:2796:-207.348,0,-175.234	0/1:50:28,22:28:994:22:769:-54.4771,0,-74.7234	0/1:122:63,58:63:2220:58:2080:-150.745,0,-163.338	0/1:27:10,17:10:354:17:612:-47.2856,0,-24.0719	0/1:74:32,42:32:1131:42:1500:-113.018,0,-79.8223	0/1:74:36,38:36:1267:38:1364:-100.784,0,-92.0553	1/1:56:0,56:0:0:56:1991:-179.464,-16.8577,0	0/1:81:49,31:49:1745:31:1112:-76.0072,0,-132.95	0/1:56:26,27:26:922:27:960:-70.4023,0,-66.9829	0/1:67:29,38:29:1022:38:1364:-102.892,0,-72.123	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:20:12,8:12:429:8:288:-20.2468,0,-32.929	1/1:159:0,159:0:0:159:5699:-513.026,-47.8638,0	1/1:184:0,184:0:0:184:6577:-592.011,-55.3895,0	1/1:180:1,178:1:36:178:6372:-570.021,-50.591,0	0/1:96:40,55:40:1415:55:1961:-147.806,0,-98.6901	0/1:205:106,98:106:3738:98:3523:-255.508,0,-274.854	1/1:46:1,45:1:36:45:1587:-139.521,-10.2491,0	0/1:399:209,188:209:7375:188:6710:-484.163,0,-543.997	1/1:142:0,140:0:0:140:5017:-451.388,-42.1442,0	0/1:51:27,24:27:950:24:844:-60.9243,0,-70.4596	1/1:288:0,286:0:0:286:10221:-919.46,-86.0946,0	0/1:172:85,84:85:3007:84:2996:-218.62,0,-219.631	1/1:168:1,166:1:36:166:5919:-529.222,-47.0336,0	.:.:.:.:.:.:.:.	0/1:9:7,2:7:251:2:72:-4.12745,0,-20.2286	1/1:6:0,6:0:0:6:216:-19.7881,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:223:0,223:0:0:223:7986:-718.76,-67.1297,0	0/1:252:112,140:112:3877:140:5020:-376.086,0,-273.275	0/1:54:31,23:31:1107:23:820:-57.8669,0,-83.6855	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:148:76,72:76:2672:72:2543:-184.568,0,-196.175	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:126:0,125:0:0:125:4471:-402.328,-37.6288,0	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:117:0,116:0:0:116:4148:-373.154,-34.9195,0	0/1:144:77,66:77:2732:66:2335:-167.082,0,-202.797	1/1:213:0,212:0:0:212:7571:-681.071,-63.8184,0	1/1:140:1,137:1:36:137:4895:-437.117,-38.297,0	1/1:133:0,132:0:0:132:4720:-424.6,-39.736,0	0/1:235:109,125:109:3866:125:4464:-331.13,0,-277.337	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:106:61,44:61:2151:44:1572:-109.804,0,-161.889	0/1:37:17,20:17:586:20:716:-53.6296,0,-41.9252	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:107:0,107:0:0:107:3818:-343.817,-32.2102,0	0/1:61:38,23:38:1332:23:817:-55.4879,0,-101.817	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:90:42,48:42:1474:48:1704:-126.553,0,-105.86	0/1:94:50,44:50:1779:44:1567:-113.024,0,-132.096	.:.:.:.:.:.:.:.	1/1:249:0,246:0:0:246:8783:-790.128,-74.0534,0	1/1:322:3,319:3:102:319:11409:-1017.17,-87.4151,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:89:59,30:59:2076:30:1065:-69.369,0,-160.318	1/1:159:1,156:1:36:156:5576:-498.396,-44.0083,0	0/1:69:41,28:41:1461:28:1008:-70.2653,0,-111.015	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:92:55,36:55:1921:36:1283:-88.1163,0,-145.511	1/1:71:0,71:0:0:71:2552:-229.56,-21.3731,0	0/1:10:1,6:1:31:6:212:-16.96,0,-0.669828	1/1:108:0,107:0:0:107:3815:-343.276,-32.2102,0	0/1:53:27,26:27:960:26:927:-67.7928,0,-70.7614	0/1:160:78,82:78:2734:82:2931:-215.859,0,-198.139	0/1:188:107,81:107:3789:81:2908:-205.361,0,-284.619	0/1:125:75,49:75:2638:49:1747:-119.826,0,-199.98	1/1:93:2,90:2:72:90:3214:-282.681,-21.1446,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:102:49,53:49:1737:53:1887:-139.403,0,-125.909	1/1:119:0,119:0:0:119:4264:-383.938,-35.8226,0	1/1:280:0,279:0:0:279:9976:-897.418,-83.9874,0	0/1:122:59,63:59:2084:63:2242:-165.317,0,-151.105	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:85:43,42:43:1539:42:1503:-109.976,0,-113.215	1/1:153:0,153:0:0:153:5477:-493.056,-46.0576,0	0/1:42:20,22:20:712:22:761:-56.1636,0,-51.7635	0/1:61:26,35:26:926:35:1247:-94.1712,0,-65.2952	0/1:53:27,26:27:969:26:897:-65.0843,0,-71.5731	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:38:16,22:16:571:22:774:-58.5408,0,-40.2838	0/1:58:39,19:39:1386:19:684:-44.4306,0,-107.579	1/1:186:1,184:1:36:184:6520:-583.36,-52.3772,0	1/1:96:0,96:0:0:96:3431:-309.004,-28.8989,0
chr03	29103838	.	A	G	122017	PASS	AB=0.486212;ABP=13.7292;AC=134;AF=0.712766;AN=188;AO=8870;CIGAR=1X;DP=12221;DPB=12221;DPRA=0;EPP=19255.3;EPPR=7270.93;GTI=0;LEN=1;MEANALT=1.04255;MQM=28.84;MQMR=56.1321;NS=94;NUMALT=1;ODDS=11.8148;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=316765;QR=119378;RO=3347;RPL=0;RPP=19264;RPPR=7270.93;RPR=8870;RUN=1;SAF=8869;SAP=19255.3;SAR=1;SRF=3347;SRP=7270.93;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:28,25:28:989:25:892:-41.9338,0,-73.2595	0/1:217:119,98:119:4231:98:3486:-160.135,0,-314.83	0/1:159:85,74:85:3044:74:2649:-122.606,0,-224.522	1/1:288:1,287:1:36:287:10275:-732.836,-83.0988,0	0/1:111:40,71:40:1421:71:2552:-140.377,0,-94.7052	0/1:89:48,41:48:1690:41:1467:-67.5219,0,-125.228	0/1:202:116,86:116:4153:86:3073:-159.784,0,-312.94	0/1:272:140,132:140:5032:132:4733:-221.74,0,-369.491	0/1:140:82,58:82:2944:58:2084:-91.6961,0,-220.84	0/1:149:77,72:77:2742:72:2554:-139.468,0,-201.528	0/1:78:47,31:47:1692:31:1073:-54.1637,0,-128.786	0/1:82:37,45:37:1328:45:1620:-78.7586,0,-94.9493	0/1:70:37,33:37:1309:33:1180:-54.4998,0,-96.5674	1/1:119:0,119:0:0:119:4238:-290.938,-35.8226,0	0/1:66:40,26:40:1440:26:931:-46.1422,0,-109.446	0/1:53:24,29:24:845:29:1029:-53.681,0,-60.3708	0/1:77:40,37:40:1440:37:1332:-62.9957,0,-106.443	1/1:76:0,76:0:0:76:2717:-175.266,-22.8783,0	0/1:46:21,25:21:756:25:900:-43.2944,0,-54.2622	1/1:235:0,235:0:0:235:8367:-601.581,-70.7421,0	1/1:182:0,182:0:0:182:6437:-441.834,-54.7875,0	1/1:170:0,170:0:0:170:6104:-460.665,-51.1751,0	0/1:132:73,59:73:2560:59:2082:-111.429,0,-190.858	0/1:163:85,78:85:3022:78:2793:-142.07,0,-222.441	1/1:92:0,92:0:0:92:3281:-225.427,-27.6948,0	0/1:486:254,232:254:8999:232:8270:-477.217,0,-661.013	1/1:267:1,266:1:36:266:9519:-646.831,-76.7784,0	0/1:44:21,23:21:756:23:828:-42.8405,0,-55.0101	1/1:404:0,404:0:0:404:14412:-1089,-121.616,0	0/1:207:96,111:96:3376:111:3984:-210.116,0,-239.9	1/1:205:0,205:0:0:205:7291:-521.962,-61.7112,0	1/1:18:0,18:0:0:18:648:-44.4394,-5.41854,0	0/1:38:22,16:22:777:16:576:-28.0749,0,-58.3774	1/1:7:0,7:0:0:7:252:-16.2918,-2.10721,0	1/1:25:0,25:0:0:25:877:-57.2676,-7.52575,0	1/1:23:0,23:0:0:23:828:-53.3024,-6.92369,0	1/1:227:0,227:0:0:227:8119:-608.889,-68.3338,0	0/1:277:123,154:123:4416:154:5471:-293.148,0,-313.321	0/1:78:42,36:42:1504:36:1296:-59.3209,0,-112.006	0/1:16:7,9:7:248:9:324:-17.4587,0,-17.7806	0/1:164:78,86:78:2808:86:3088:-160.963,0,-203.239	1/1:43:0,43:0:0:43:1533:-104.376,-12.9443,0	1/1:172:0,172:0:0:172:6093:-418.027,-51.7772,0	1/1:68:0,68:0:0:68:2440:-174.603,-20.47,0	1/1:69:0,69:0:0:69:2476:-178.574,-20.7711,0	1/1:218:2,216:2:72:216:7665:-571.334,-58.7878,0	0/1:155:69,86:69:2450:86:3051:-150.132,0,-173.399	1/1:246:0,246:0:0:246:8750:-619.813,-74.0534,0	1/1:137:1,136:1:36:136:4854:-345.39,-37.7866,0	1/1:161:0,160:0:0:160:5726:-410.793,-48.1648,0	0/1:191:108,82:108:3861:82:2947:-164.087,0,-290.099	1/1:21:0,21:0:0:21:756:-55.1525,-6.32163,0	0/1:191:94,97:94:3380:97:3454:-164.834,0,-246.103	0/1:81:40,41:40:1410:41:1468:-86.0671,0,-102.659	0/1:29:16,13:16:576:13:468:-21.2036,0,-43.3914	1/1:113:0,113:0:0:113:4041:-276.255,-34.0164,0	0/1:56:25,31:25:900:31:1091:-61.3872,0,-64.2609	1/1:14:0,14:0:0:14:504:-38.0675,-4.21442,0	0/1:45:29,16:29:1029:16:568:-30.2242,0,-79.3743	0/1:98:50,48:50:1796:48:1705:-87.7077,0,-131.64	0/1:165:83,82:83:2961:82:2917:-156.061,0,-216.695	0/1:11:8,3:8:273:3:108:-4.81641,0,-21.586	1/1:290:1,289:1:36:289:10328:-773.899,-83.7004,0	1/1:241:5,236:5:180:236:8461:-582.212,-55.9994,0	1/1:69:0,69:0:0:69:2480:-168.174,-20.7711,0	0/1:130:67,63:67:2385:63:2260:-121.147,0,-175.571	1/1:205:1,204:1:36:204:7284:-514.062,-58.1133,0	0/1:159:99,60:99:3545:60:2141:-106.682,0,-270.994	1/1:25:0,25:0:0:25:896:-61.5248,-7.52575,0	0/1:125:60,65:60:2141:65:2302:-111.251,0,-154.793	1/1:97:0,97:0:0:97:3477:-259.401,-29.1999,0	0/1:39:21,18:21:756:18:644:-34.4529,0,-56.2631	1/1:165:0,165:0:0:165:5928:-381.091,-49.67,0	0/1:67:43,24:43:1535:24:860:-35.562,0,-117.407	0/1:292:146,146:146:5188:146:5190:-268.513,0,-378.689	0/1:228:106,122:106:3797:122:4384:-246.476,0,-272.661	0/1:167:86,81:86:3039:81:2893:-137.534,0,-220.965	1/1:126:0,124:0:0:124:4441:-286.188,-37.3277,0	0/1:14:5,9:5:180:9:324:-16.767,0,-12.2901	0/1:122:63,59:63:2264:59:2109:-107.779,0,-167.108	1/1:145:0,145:0:0:145:5148:-333.068,-43.6494,0	1/1:311:0,311:0:0:311:11134:-797.034,-93.6203,0	0/1:132:69,63:69:2461:63:2249:-123.125,0,-181.901	1/1:75:0,75:0:0:75:2692:-192.164,-22.5773,0	0/1:100:51,49:51:1836:49:1764:-97.205,0,-134.951	1/1:131:1,130:1:36:130:4635:-328.433,-35.8371,0	0/1:47:26,21:26:936:21:747:-34.3229,0,-70.1292	0/1:84:42,42:42:1512:42:1512:-71.4851,0,-110.72	0/1:47:26,21:26:936:21:756:-34.0399,0,-70.0974	0/1:57:26,31:26:936:31:1112:-58.81,0,-66.5037	0/1:112:50,62:50:1755:62:2228:-118.093,0,-124.259	0/1:78:44,34:44:1550:34:1215:-64.066,0,-115.51	1/1:152:0,152:0:0:152:5445:-391.149,-45.7566,0	1/1:98:0,98:0:0:98:3479:-251.41,-29.5009,0
chr03	29103871	.	AGTAC	TGTAT,AGTAT	196139	PASS	AB=0.487366,0.510308;ABP=11.9537,8.9646;AC=134,54;AF=0.712766,0.287234;AN=188;AO=8852,3313;CIGAR=1X3M1X,4M1X;DP=12203;DPB=12206;DPRA=0,1.18022;EPP=19224.9,7197.1;EPPR=7.35324;GTI=0;LEN=5,1;MEANALT=2.06383,2.27941;MQM=28.8172,56.1464;MQMR=60;NS=94;NUMALT=2;ODDS=11.2023;PAIRED=0,0;PAIREDR=0;PAO=15,0;PQA=504,0;PQR=0;PRO=0;QA=309634,118098;QR=72;RO=2;RPL=8852,3313;RPP=19224.9,7197.1;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=8852,3313;SAP=19224.9,7197.1;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:0,26,28:0:0:26,28:896,981:-131.59,-79.9726,-72.1458,-51.9172,0,-43.4883	1/2:216:0,97,119:0:0:97,119:3399,4263:-539.66,-347.301,-318.101,-192.66,0,-156.837	1/2:155:0,73,82:0:0:73,82:2553,2935:-383.065,-237.974,-215.998,-145.393,0,-120.709	1/1:290:0,288,2:0:0:288,2:10102,72:-733.74,-86.6966,0,-727.971,-80.8268,-727.368	1/2:112:0,71,41:0:0:71,41:2472,1457:-269.284,-119.005,-97.632,-150.602,0,-138.26	1/2:87:0,41,46:0:0:41,46:1450,1638:-214.842,-133.127,-120.784,-82.0172,0,-68.1698	1/2:203:1,84,118:1:36:84,118:2944,4195:-526.871,-338.674,-316.325,-185.514,0,-152.931	1/2:263:0,128,134:0:0:128,134:4468,4740:-638.039,-384.844,-346.312,-253.223,0,-212.885	1/2:139:0,58,81:0:0:58,81:2050,2888:-349.186,-233.584,-216.124,-115.899,0,-91.5153	1/2:148:0,71,76:0:0:71,76:2442,2710:-378.845,-219.979,-198.606,-158.934,0,-136.056	1/2:78:0,31,47:0:0:31,47:1074,1679:-205.649,-137.035,-127.703,-68.9241,0,-54.7757	1/2:82:0,45,37:0:0:45,37:1552,1328:-196.937,-108.496,-94.9493,-88.752,0,-77.6139	1/2:71:0,34,37:0:0:34,37:1205,1319:-174.518,-107.339,-97.104,-67.4807,0,-56.3426	1/1:121:0,120,1:0:0:120,1:4194,32:-291.641,-36.1236,0,-289.433,-33.6369,-289.132	1/2:66:0,26,40:0:0:26,40:902,1428:-173.379,-116.413,-108.586,-57.2745,0,-45.2333	1/2:52:0,29,23:0:0:29,23:1012,820:-127.809,-67.1542,-58.4243,-60.9712,0,-54.0475	1/2:75:0,36,39:0:0:36,39:1248,1396:-185.066,-113.668,-102.831,-71.4344,0,-59.6942	1/1:75:0,74,0:0:0:74,0:2580,0:-168.463,-22.2762,0,-168.463,-22.2762,-168.463	1/2:47:0,25,22:0:0:25,22:887,783:-113.106,-63.9122,-56.3865,-49.5002,0,-42.8776	1/1:238:0,238,0:0:0:238,0:8284,0:-603.313,-71.6451,0,-603.313,-71.6451,-603.313	1/1:182:0,181,0:0:0:181,0:6246,0:-436.273,-54.4864,0,-436.273,-54.4864,-436.273	1/1:171:0,170,0:0:0:170,0:5938,0:-454.095,-51.1751,0,-454.095,-51.1751,-454.095	1/2:128:0,57,70:0:0:57,70:1981,2511:-332.889,-204.849,-187.69,-128.091,0,-107.018	1/2:164:0,78,85:0:0:78,85:2714,3036:-412.808,-247.328,-223.848,-165.534,0,-139.947	1/1:91:0,89,0:0:0:89,0:3127,0:-217.207,-26.7917,0,-217.207,-26.7917,-217.207	1/2:480:0,232,246:0:0:232,246:8082,8736:-1258.43,-711.274,-641.435,-547.181,0,-473.128	1/1:268:0,267,1:0:0:267,1:9366,36:-649.773,-80.375,0,-646.836,-77.0795,-646.535	1/2:44:0,23,21:0:0:23,21:789,756:-109.76,-61.9338,-55.0101,-48.1408,0,-41.8192	1/1:408:0,405,0:0:0:405,0:14121,0:-1081.6,-121.917,0,-1081.6,-121.917,-1081.6	1/2:209:0,112,96:0:0:112,96:3920,3427:-516.675,-278.533,-244.818,-238.137,0,-209.238	1/1:207:0,206,1:0:0:206,1:7213,36:-520.723,-62.0122,0,-517.83,-58.7647,-517.529	1/1:19:0,19,0:0:0:19,0:662,0:-46.473,-5.71957,0,-46.473,-5.71957,-46.473	1/2:37:0,16,21:0:0:16,21:565,756:-95.8423,-61.6117,-56.7953,-34.5392,0,-28.2176	1/1:7:0,7,0:0:0:7,0:244,0:-16.1927,-2.10721,0,-16.1927,-2.10721,-16.1927	1/1:24:0,24,0:0:0:24,0:831,0:-54.7865,-7.22472,0,-54.7865,-7.22472,-54.7865	1/1:24:0,24,0:0:0:24,0:838,0:-55.3066,-7.22472,0,-55.3066,-7.22472,-55.3066	1/1:231:0,230,0:0:0:230,0:8038,0:-611.406,-69.2369,0,-611.406,-69.2369,-611.406	1/2:278:0,153,124:0:0:153,124:5332,4424:-685.416,-360.131,-314.073,-325.394,0,-288.067	1/2:80:0,35,44:0:0:35,44:1227,1541:-193.773,-125.307,-114.771,-68.5486,0,-55.3033	1/2:15:0,9,6:0:0:9,6:322,216:-37.1935,-17.9749,-15.2657,-19.5429,0,-17.7367	1/2:168:0,90,78:0:0:90,78:3167,2788:-418.577,-227.406,-200.313,-191.487,0,-168.007	1/1:43:0,43,0:0:0:43,0:1502,0:-103.857,-12.9443,0,-103.857,-12.9443,-103.857	1/1:172:0,172,0:0:0:172,0:6023,0:-417.683,-51.7772,0,-417.683,-51.7772,-417.683	1/1:69:0,67,1:0:0:67,1:2336,36:-170.255,-20.169,0,-167.806,-17.6806,-167.505	1/1:72:0,72,0:0:0:72,0:2515,0:-184.553,-21.6742,0,-184.553,-21.6742,-184.553	1/1:218:0,214,2:0:0:214,2:7514,72:-571.591,-64.4204,0,-565.716,-58.5015,-565.114	1/2:153:0,85,68:0:0:85,68:2981,2429:-366.319,-197.534,-171.946,-168.805,0,-148.335	1/1:246:0,244,0:0:0:244,0:8550,0:-613.101,-73.4513,0,-613.101,-73.4513,-613.101	1/1:137:0,136,1:0:0:136,1:4769,36:-346.518,-40.9401,0,-343.625,-38.0062,-343.324	1/1:163:0,162,0:0:0:162,0:5694,0:-413.867,-48.7669,0,-413.867,-48.7669,-413.867	1/2:189:0,85,104:0:0:85,104:2954,3698:-501.217,-301.588,-276,-199.951,0,-168.644	1/1:21:0,21,0:0:0:21,0:729,0:-54.323,-6.32163,0,-54.323,-6.32163,-54.323	1/2:191:0,97,94:0:0:97,94:3396,3363:-466.019,-273.765,-244.565,-192.56,0,-164.263	1/2:81:0,43,36:0:0:43,36:1495,1283:-205.987,-104.575,-91.6307,-101.386,0,-90.5485	1/2:29:0,13,16:0:0:13,16:449,576:-72.7424,-47.3048,-43.3914,-25.7374,0,-20.9209	1/1:112:0,112,0:0:0:112,0:3902,0:-271.817,-33.7154,0,-271.817,-33.7154,-271.817	1/2:52:0,30,22:0:0:30,22:1052,792:-130.25,-64.7906,-55.7597,-65.7829,0,-59.1603	1/1:13:0,13,0:0:0:13,0:453,0:-35.3317,-3.91339,0,-35.3317,-3.91339,-35.3317	1/2:45:0,16,29:0:0:16,29:550,1022:-121.528,-83.5592,-78.7428,-38.2855,0,-29.5556	1/2:98:0,48,50:0:0:48,50:1655,1792:-246.925,-145.547,-131.098,-101.689,0,-86.6379	1/2:163:0,82,81:0:0:82,81:2853,2886:-414.79,-235.378,-210.694,-179.728,0,-155.345	1/2:10:0,3,7:0:0:3,7:103,234:-26.0546,-19.2757,-18.3726,-7.07861,0,-4.9714	1/1:290:0,289,1:0:0:289,1:10216,36:-775.135,-86.9977,0,-772.197,-83.7004,-771.896	1/1:242:0,233,5:0:0:233,5:8172,180:-586.756,-70.14,0,-572.071,-55.3932,-570.566	1/1:69:0,69,0:0:0:69,0:2447,0:-167.525,-20.7711,0,-167.525,-20.7711,-167.525	1/2:128:0,63,65:0:0:63,65:2203,2316:-328.317,-188.72,-169.755,-139.631,0,-120.064	1/1:205:0,204,1:0:0:204,1:7158,36:-515.327,-61.4101,0,-512.389,-58.1133,-512.088	1/2:158:0,60,97:0:0:60,97:2125,3456:-417.451,-281.407,-263.345,-136.006,0,-106.806	1/1:26:0,25,0:0:0:25,0:865,0:-60.7068,-7.52575,0,-60.7068,-7.52575,-60.7068	1/2:125:0,65,60:0:0:65,60:2254,2139:-302.865,-174.066,-154.499,-129.105,0,-111.043	1/1:96:0,96,0:0:0:96,0:3339,0:-253.297,-28.8989,0,-253.297,-28.8989,-253.297	1/2:40:0,18,22:0:0:18,22:640,784:-104.435,-64.0358,-58.6173,-40.7145,0,-34.0919	1/1:164:0,164,0:0:0:164,0:5747,0:-375.504,-49.3689,0,-375.504,-49.3689,-375.504	1/2:66:0,23,43:0:0:23,43:801,1544:-171.041,-125.44,-118.516,-45.8914,0,-32.9472	1/2:289:0,146,143:0:0:146,143:5111,5096:-726.412,-415.262,-371.312,-311.463,0,-268.416	1/2:229:0,121,108:0:0:121,108:4254,3875:-588.611,-315.756,-279.332,-273.178,0,-240.667	1/2:160:0,76,84:0:0:76,84:2677,2999:-393.934,-242.503,-219.625,-151.733,0,-126.446	1/1:122:0,121,1:0:0:121,1:4251,36:-276.54,-36.4246,0,-273.708,-33.245,-273.407	1/2:14:0,9,5:0:0:9,5:321,180:-32.92,-14.9994,-12.2901,-18.2425,0,-16.7373	1/2:120:0,58,62:0:0:58,62:2028,2224:-304.619,-181.282,-163.823,-123.358,0,-104.694	1/1:145:0,145,0:0:0:145,0:5100,0:-332.769,-43.6494,0,-332.769,-43.6494,-332.769	1/1:312:0,310,1:0:0:310,1:10845,36:-787.732,-93.3193,0,-784.839,-90.3928,-784.538	1/2:134:0,62,72:0:0:62,72:2192,2540:-347.584,-207.017,-188.354,-140.883,0,-119.209	1/1:76:0,75,0:0:0:75,0:2613,0:-189.854,-22.5773,0,-189.854,-22.5773,-189.854	1/2:100:0,49,51:0:0:49,51:1715,1831:-260.215,-149.254,-134.504,-111.282,0,-95.9291	1/1:132:0,129,2:0:0:129,2:4501,72:-326.875,-38.8329,0,-321.044,-32.8954,-320.442	1/2:48:0,21,27:0:0:21,27:742,945:-119.021,-77.1219,-70.8002,-42.1958,0,-34.068	1/2:84:0,42,42:0:0:42,42:1468,1499:-205.145,-122.202,-109.559,-83.2471,0,-70.6038	1/2:48:0,23,25:0:0:23,25:799,896:-118.134,-73.1291,-66.2054,-45.3064,0,-37.7806	1/2:58:0,31,27:0:0:31,27:1087,972:-144.659,-78.765,-69.4331,-66.2097,0,-58.0819	1/2:110:0,61,48:0:0:61,48:2120,1704:-268.144,-138.612,-120.249,-129.601,0,-115.152	1/2:78:1,34,43:1:36:34,43:1197,1524:-196.618,-120.848,-113.55,-73.0879,0,-63.0832	1/1:153:0,152,1:0:0:152,1:5312,32:-387.781,-45.7566,0,-385.29,-42.9549,-384.989	1/1:98:0,98,0:0:0:98,0:3422,0:-250.648,-29.5009,0,-250.648,-29.5009,-250.648
chr03	29131501	.	A	G	21282	PASS	AB=0.477745;ABP=14.6087;AC=54;AF=0.290323;AN=186;AO=1309;CIGAR=1X;DP=5221;DPB=5221;DPRA=0.947158;EPP=2845.47;EPPR=8491.3;GTI=1;LEN=1;MEANALT=1.03333;MQM=59.6463;MQMR=59.9573;NS=93;NUMALT=1;ODDS=1.07309;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46872;QR=140112;RO=3909;RPL=1309;RPP=2845.47;RPPR=8491.3;RPR=0;RUN=1;SAF=0;SAP=2845.47;SAR=1309;SRF=0;SRP=8491.3;SRR=3909;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:23,9:23:824:9:320:-19.5094,0,-64.8504	0/1:50:34,16:34:1216:16:558:-35.4913,0,-94.6951	0/1:99:43,56:43:1548:56:2008:-151.191,0,-109.811	0/0:109:109,0:109:3882:0:0:0,-32.8123,-349.564	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/1:78:41,37:41:1464:37:1324:-95.9654,0,-108.576	0/1:102:48,54:48:1720:54:1940:-144.143,0,-124.38	0/1:65:36,28:36:1296:28:1000:-70.6827,0,-97.3182	0/1:41:22,19:22:792:19:680:-49.1787,0,-59.2634	0/1:34:8,26:8:288:26:936:-74.3163,0,-16.0324	0/1:75:37,38:37:1332:38:1359:-99.9866,0,-97.6051	0/1:66:26,40:26:932:40:1417:-107.844,0,-64.3309	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.097	0/1:50:33,17:33:1184:17:608:-39.9923,0,-91.8168	0/1:41:16,25:16:576:25:896:-68.5898,0,-39.8328	0/1:22:10,12:10:360:12:428:-32.2076,0,-26.1216	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:25:19,6:19:684:6:216:-12.2648,0,-54.3646	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.797	0/0:143:142,0:142:5083:0:0:0,-42.7463,-457.383	0/0:43:42,1:42:1489:1:36:0,-9.34601,-130.704	0/1:47:33,14:33:1188:14:496:-30.8226,0,-93.0802	0/1:57:39,18:39:1400:18:648:-41.4755,0,-109.14	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:182:100,81:100:3568:81:2897:-206.112,0,-266.48	0/0:143:143,0:143:5132:0:0:0,-43.0473,-462.02	0/1:26:15,11:15:540:11:388:-27.4306,0,-41.1098	0/0:138:138,0:138:4945:0:0:0,-41.5421,-445.197	0/1:116:73,43:73:2620:43:1544:-104.334,0,-201.128	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:173:172,1:172:6169:1:36:0,-48.4799,-551.702	0/1:62:37,25:37:1305:25:896:-62.2965,0,-98.9993	0/1:36:29,7:29:1040:7:252:-12.1872,0,-83.0773	.:.:.:.:.:.:.:.	0/1:43:23,20:23:828:20:709:-51.189,0,-61.8998	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.367	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:57:38,19:38:1353:19:658:-42.3748,0,-104.91	0/0:103:100,3:100:3584:3:108:0,-20.9309,-312.455	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.605	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:61:27,34:27:972:34:1203:-90.1708,0,-69.4351	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:43:17,26:17:612:26:932:-71.2546,0,-42.4691	0/1:44:22,22:22:792:22:792:-58.3511,0,-58.3604	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.55	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:6:6,0:6:193:0:0:0,-1.80618,-17.6856	0/1:16:7,9:7:252:9:324:-24.6801,0,-18.2125	0/1:34:25,9:25:896:9:324:-19.2699,0,-70.7253	0/1:83:44,39:44:1580:39:1399:-101.217,0,-117.506	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.211	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:36:20,16:20:711:16:576:-41.3379,0,-53.4786	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:107:36,71:36:1292:71:2552:-197.72,0,-84.3736	0/0:20:19,1:19:684:1:36:0,-2.42232,-58.2921	0/1:32:17,15:17:612:15:540:-39.2943,0,-45.7805	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/1:54:31,23:31:1116:23:820:-57.8268,0,-84.4961	0/1:122:57,65:57:2052:65:2332:-173.396,0,-148.226	0/1:116:54,62:54:1929:62:2228:-165.853,0,-138.965	0/1:21:17,4:17:608:4:144:-6.99199,0,-48.7304	0/0:58:57,1:57:2033:1:36:0,-13.8615,-179.642	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:46:23,23:23:824:23:824:-60.6359,0,-60.6183	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.271	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:50:21,29:21:756:29:1044:-79.2151,0,-53.3075	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:43:20,23:20:720:23:824:-61.539,0,-52.1845	0/0:122:120,2:120:4316:2:72:0,-29.8889,-381.777	0/1:17:7,10:7:252:10:360:-27.5982,0,-17.9114	0/1:72:32,40:32:1152:40:1436:-107.778,0,-82.316	0/1:53:31,22:31:1112:22:792:-55.6511,0,-84.4368	0/1:26:17,9:17:612:9:324:-21.6791,0,-47.5867	0/1:86:42,44:42:1497:44:1584:-116.928,0,-109.134	0/1:58:23,35:23:824:35:1260:-96.2457,0,-57.0236	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:78:76,2:76:2713:2:72:0,-16.6436,-237.575
chr03	29152924	.	C	A	31826.4	PASS	AB=0.413018;ABP=336.194;AC=54;AF=0.287234;AN=188;AO=2099;CIGAR=1X;DP=10341;DPB=10341;DPRA=0.80384;EPP=4552.25;EPPR=17709.7;GTI=4;LEN=1;MEANALT=1;MQM=59.9805;MQMR=59.9687;NS=94;NUMALT=1;ODDS=1.1848;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74860;QR=295024;RO=8242;RPL=0;RPP=4560.93;RPPR=17589;RPR=2099;RUN=1;SAF=1;SAP=4552.25;SAR=2098;SRF=14;SRP=17778.9;SRR=8228;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	0/1:120:61,59:61:2188:59:2108:-153.866,0,-161.062	0/1:100:64,36:64:2296:36:1286:-85.9394,0,-176.798	0/0:171:171,0:171:6132:0:0:0,-51.4761,-551.979	0/1:94:57,37:57:2040:37:1332:-91.8856,0,-155.575	0/1:85:35,50:35:1256:50:1796:-136.335,0,-87.7577	0/1:196:137,59:137:4908:59:2105:-130.716,0,-382.867	0/1:168:112,56:112:4028:56:1991:-128.89,0,-312.133	0/1:114:56,58:56:2000:58:2067:-151.983,0,-145.956	0/1:82:44,38:44:1557:38:1352:-97.295,0,-115.735	0/1:67:51,16:51:1817:16:576:-32.006,0,-143.64	0/1:79:48,31:48:1686:31:1112:-76.61,0,-128.241	0/1:102:62,40:62:2205:40:1428:-98.1125,0,-168.007	0/0:86:85,1:85:3007:1:36:0,-22.2903,-266.24	0/1:88:47,41:47:1677:41:1459:-105.115,0,-124.725	0/1:73:43,30:43:1544:30:1055:-73.2848,0,-117.278	0/1:63:41,22:41:1449:22:784:-51.919,0,-111.735	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.121	0/1:74:45,29:45:1612:29:1017:-69.5636,0,-123.094	0/0:154:154,0:154:5528:0:0:0,-46.3586,-497.615	0/0:224:224,0:224:8048:0:0:0,-67.4307,-724.335	0/0:125:125,0:125:4472:0:0:0,-37.6287,-402.65	0/1:78:41,37:41:1476:37:1316:-95.2615,0,-109.656	0/1:118:76,42:76:2736:42:1490:-98.8476,0,-210.956	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/1:314:167,147:167:5981:147:5225:-375.864,0,-443.871	0/0:198:198,0:198:7089:0:0:0,-59.6039,-638.045	0/1:48:31,17:31:1116:17:608:-40.6026,0,-86.3023	0/0:286:285,1:285:10213:1:36:0,-82.4963,-915.495	0/1:153:84,69:84:3009:69:2476:-177.036,0,-224.982	0/0:160:160,0:160:5720:0:0:0,-48.1648,-514.883	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5289	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:294:294,0:294:10503:0:0:0,-88.5028,-945.183	0/1:185:98,87:98:3524:87:3111:-224.523,0,-261.678	0/1:85:50,35:50:1781:35:1221:-84.6037,0,-134.983	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:113:45,68:45:1612:68:2422:-184.219,0,-111.354	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:158:158,0:158:5668:0:0:0,-47.5627,-510.238	0/0:115:115,0:115:4117:0:0:0,-34.6184,-370.712	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:116:116,0:116:4136:0:0:0,-34.9195,-372.37	0/1:137:84,53:84:2986:53:1896:-129.677,0,-227.729	0/0:217:217,0:217:7768:0:0:0,-65.3235,-699.151	0/0:161:161,0:161:5742:0:0:0,-48.4658,-516.895	0/0:159:159,0:159:5720:0:0:0,-47.8638,-514.914	0/1:177:106,71:106:3785:71:2540:-175.569,0,-287.565	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:153:91,62:91:3256:62:2216:-153.647,0,-247.203	0/1:63:44,19:44:1580:19:676:-42.2031,0,-123.509	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:127:127,0:127:4537:0:0:0,-38.2308,-408.495	0/1:55:31,24:31:1116:24:856:-60.8045,0,-84.1389	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:58:40,18:40:1440:18:648:-41.1921,0,-112.438	0/1:123:67,56:67:2412:56:2000:-143.247,0,-180.309	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:254:254,0:254:9109:0:0:0,-76.4616,-819.78	0/0:280:279,1:279:9955:1:36:0,-80.6901,-892.288	0/0:70:70,0:70:2486:0:0:0,-21.0721,-223.99	0/1:63:40,23:40:1440:23:828:-55.8792,0,-110.933	0/0:180:179,1:179:6409:1:36:0,-50.5871,-573.298	0/1:101:38,63:38:1356:63:2256:-172.899,0,-91.9365	0/0:48:47,1:47:1680:1:36:0,-10.8512,-147.889	0/1:63:39,24:39:1404:24:855:-58.3053,0,-107.694	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.335	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/0:178:178,0:178:6328:0:0:0,-53.5833,-569.61	0/1:91:71,20:71:2544:20:720:-37.735,0,-201.817	0/1:207:111,96:111:3984:96:3414:-245.16,0,-296.436	0/1:232:147,85:147:5257:85:3048:-204.71,0,-403.382	0/1:51:22,29:22:792:29:1036:-78.2014,0,-56.2531	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:129:74,55:74:2660:55:1965:-138.291,0,-200.812	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/0:302:302,0:302:10766:0:0:0,-90.9111,-968.846	0/1:105:61,44:61:2184:44:1576:-110.521,0,-165.218	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.89	0/1:94:70,24:70:2520:24:856:-49.0643,0,-198.754	0/0:215:215,0:215:7683:0:0:0,-64.7214,-691.5	0/1:47:26,21:26:936:21:735:-52.323,0,-70.4111	0/1:109:70,39:70:2508:39:1369:-90.6942,0,-193.16	0/1:74:47,27:47:1688:27:964:-64.8006,0,-129.931	0/1:54:38,16:38:1356:16:563:-34.7435,0,-106.085	0/1:105:69,36:69:2476:36:1279:-83.8043,0,-191.485	0/1:78:39,39:39:1400:39:1395:-102.368,0,-102.819	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.37	0/0:131:131,0:131:4708:0:0:0,-39.4349,-423.878
chr03	29215006	.	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chr03	29243005	.	G	A	28806.8	PASS	AB=0.492701;ABP=5.92673;AC=55;AF=0.292553;AN=188;AO=3123;CIGAR=1X;DP=11720;DPB=11720;DPRA=0.98941;EPP=6784.52;EPPR=18651.6;GTI=4;LEN=1;MEANALT=1.05;MQM=28.1034;MQMR=54.0537;NS=94;NUMALT=1;ODDS=0.38563;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112020;QR=306475;RO=8588;RPL=3123;RPP=6784.52;RPPR=18651.6;RPR=0;RUN=1;SAF=0;SAP=6784.52;SAR=3123;SRF=0;SRP=18651.6;SRR=8588;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:27,29:27:964:29:1040:-50.13,0,-69.9857	0/1:196:97,99:97:3468:99:3548:-169.361,0,-251.08	0/1:91:34,57:34:1216:57:2044:-103.856,0,-82.0849	0/0:226:225,1:225:8056:1:36:0,-65.13,-720.055	0/1:92:53,39:53:1888:39:1400:-67.6392,0,-140.944	0/1:99:41,58:41:1463:58:2080:-103.601,0,-100.461	0/1:189:96,93:96:3419:93:3308:-184.616,0,-249.995	0/1:290:125,164:125:4437:164:5865:-288.841,0,-309.337	0/1:159:74,85:74:2648:85:3056:-147.831,0,-188.114	0/1:164:93,71:93:3298:71:2556:-136.258,0,-247.117	0/1:135:64,71:64:2262:71:2552:-144.375,0,-163.011	0/1:118:67,51:67:2384:51:1836:-81.761,0,-178.632	0/1:89:46,43:46:1634:43:1548:-72.2336,0,-119.961	0/0:115:115,0:115:4115:0:0:0,-34.6184,-368.852	0/1:68:32,36:32:1139:36:1283:-72.7433,0,-82.1485	0/1:51:36,15:36:1280:15:532:-21.551,0,-99.2984	0/1:97:52,45:52:1846:45:1616:-74.24,0,-135.582	0/0:56:56,0:56:2008:0:0:0,-16.8577,-179.85	0/1:59:31,28:31:1099:28:1008:-46.9745,0,-80.9147	0/0:180:178,2:178:6353:2:72:0,-48.8284,-565.058	0/0:184:183,0:183:6519:0:0:0,-55.0885,-584.975	0/0:96:96,0:96:3423:0:0:0,-28.8989,-307.842	0/1:119:54,65:54:1907:65:2336:-133.212,0,-135.596	0/1:132:72,60:72:2567:60:2156:-106.933,0,-190.755	0/0:108:108,0:108:3850:0:0:0,-32.5112,-344.964	0/1:438:243,195:243:8672:195:6992:-399.352,0,-644.821	0/0:231:231,0:231:8255:0:0:0,-69.5379,-740.443	0/1:56:36,20:36:1292:20:720:-32.3463,0,-98.7906	0/0:173:173,0:173:6139:0:0:0,-52.0782,-549.717	0/1:254:121,133:121:4310:133:4784:-250.622,0,-310.08	0/0:189:188,0:188:6716:0:0:0,-56.5936,-603.038	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6979	0/1:17:13,4:13:460:4:144:-5.00644,0,-36.5596	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9711	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.3654	0/0:412:411,0:411:14703:0:0:0,-123.723,-1320.8	0/1:339:182,157:182:6499:157:5624:-283.211,0,-479.831	0/1:113:49,64:49:1748:64:2304:-112.694,0,-122.934	1/1:2:0,2:0:0:2:72:-5.19878,-0.60206,0	0/1:129:62,67:62:2224:67:2376:-124.905,0,-160.419	0/0:43:43,0:43:1544:0:0:0,-12.9443,-138.791	0/0:111:111,0:111:3960:0:0:0,-33.4143,-354.389	0/0:111:111,0:111:3931:0:0:0,-33.4143,-353.216	0/0:110:109,0:109:3899:0:0:0,-32.8123,-349.555	0/0:166:166,0:166:5907:0:0:0,-49.971,-530.215	0/1:161:76,85:76:2720:85:3052:-147.43,0,-195.05	0/0:246:246,0:246:8765:0:0:0,-74.0534,-786.557	0/0:170:168,0:168:5995:0:0:0,-50.573,-537.296	0/0:130:129,1:129:4616:1:36:0,-36.2311,-410.528	0/1:165:81,84:81:2876:84:3020:-179.088,0,-209.06	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.6952	0/1:117:65,52:65:2323:52:1872:-84.7828,0,-173.408	0/1:53:26,27:26:903:27:972:-58.5761,0,-65.5399	0/1:23:11,12:11:396:12:432:-20.9662,0,-28.6035	0/0:122:122,0:122:4357:0:0:0,-36.7257,-389.733	0/1:45:25,20:25:888:20:704:-38.5772,0,-66.394	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0211	0/1:30:26,4:26:932:4:140:-2.12712,0,-75.1146	0/1:119:74,44:74:2652:44:1565:-71.5631,0,-202.204	0/1:189:87,102:87:3115:102:3668:-208.084,0,-222.951	0/1:11:4,7:4:140:7:252:-14.9618,0,-9.62416	0/0:214:214,0:214:7660:0:0:0,-64.4204,-686.996	0/0:297:297,0:297:10644:0:0:0,-89.4059,-955.143	0/0:95:95,0:95:3395:0:0:0,-28.5978,-303.957	0/1:69:30,39:30:1061:39:1400:-80.7393,0,-73.9815	0/0:230:227,2:227:8086:2:72:0,-63.7509,-720.376	0/1:130:46,84:46:1648:84:3012:-179.396,0,-109.161	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.563	0/1:81:38,43:38:1368:43:1544:-74.844,0,-98.4629	0/0:148:148,0:148:5300:0:0:0,-44.5524,-475.922	0/1:13:6,7:6:216:7:248:-13.9002,0,-14.7418	0/0:164:164,0:164:5857:0:0:0,-49.3689,-523.405	0/1:87:51,36:51:1812:36:1288:-56.8676,0,-136.068	0/1:241:136,105:136:4868:105:3776:-186.011,0,-362.011	0/1:95:50,45:50:1792:45:1620:-88.503,0,-132.488	0/1:164:104,60:104:3708:60:2160:-89.0571,0,-282.864	0/0:126:121,5:121:4331:5:171:0,-26.3549,-375.475	0/1:16:11,5:11:392:5:180:-6.95357,0,-30.6335	0/1:76:37,39:37:1324:39:1400:-72.799,0,-96.2795	0/0:49:49,0:49:1734:0:0:0,-14.7505,-155.967	0/0:240:240,0:240:8545:0:0:0,-72.2472,-765.77	0/1:171:89,82:89:3179:82:2936:-161.405,0,-234.336	0/0:68:68,0:68:2439:0:0:0,-20.47,-218.714	0/1:111:55,56:55:1955:56:2008:-112.217,0,-142.051	0/0:256:251,5:251:8974:5:180:0,-63.711,-791.784	0/1:57:27,30:27:964:30:1076:-52.1318,0,-69.3508	0/1:127:68,59:68:2422:59:2112:-97.5744,0,-178.931	0/1:95:53,42:53:1904:42:1512:-68.1246,0,-142.425	0/1:42:15,27:15:536:27:972:-54.1821,0,-35.5931	0/1:148:67,81:67:2400:81:2912:-154.225,0,-171.127	0/1:116:37,79:37:1307:79:2840:-170.491,0,-82.6415	0/0:80:80,0:80:2856:0:0:0,-24.0824,-256.498	0/0:176:176,0:176:6264:0:0:0,-52.9813,-561.214
chr04	75540	.	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chr04	138754	.	CTGA	ATGA,ATGC	230582	PASS	AB=0.507184,0.488527;ABP=5.10074,8.34189;AC=148,40;AF=0.787234,0.212766;AN=188;AO=8117,2308;CIGAR=1X3M,1X2M1X;DP=10465;DPB=10465;DPRA=18.7437,1.22208;EPP=16872.8,4842.56;EPPR=0;GTI=1;LEN=1,4;MEANALT=1.93548,2.44;MQM=59.9495,59.7418;MQMR=0;NS=94;NUMALT=2;ODDS=4.5932;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=290423,81154;QR=0;RO=0;RPL=43,7;RPP=17257.3,4954.15;RPPR=0;RPR=8074,2301;RUN=1,1;SAF=8072,2295;SAP=17240.2,4902.49;SAR=45,13;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52,0:0:0:52,0:1864,0:-168.035,-15.6536,0,-168.035,-15.6536,-168.035	1/1:199:0,199,0:0:0:199,0:7125,0:-641.306,-59.905,0,-641.306,-59.905,-641.306	1/1:188:0,188,0:0:0:188,0:6717,0:-604.183,-56.5936,0,-604.183,-56.5936,-604.183	1/2:246:0,130,116:0:0:130,116:4680,4074:-713.678,-331.809,-292.675,-382.224,0,-347.305	1/1:69:0,69,0:0:0:69,0:2484,0:-223.813,-20.7711,0,-223.813,-20.7711,-223.813	1/1:72:0,72,0:0:0:72,0:2588,0:-233.165,-21.6742,0,-233.165,-21.6742,-233.165	1/2:111:0,61,50:0:0:61,50:2186,1759:-321.82,-143.532,-125.169,-178.642,0,-163.591	1/1:184:0,183,0:0:0:183,0:6511,0:-585.713,-55.0885,0,-585.713,-55.0885,-585.713	1/2:112:0,46,65:0:0:46,65:1656,2241:-317.213,-182.089,-168.241,-135.206,0,-115.639	1/1:77:0,76,0:0:0:76,0:2713,0:-243.946,-22.8783,0,-243.946,-22.8783,-243.946	1/2:87:0,42,44:0:0:42,44:1512,1545:-249.11,-125.735,-113.092,-123.371,0,-110.126	1/1:98:0,98,0:0:0:98,0:3505,0:-315.655,-29.5009,0,-315.655,-29.5009,-315.655	1/2:61:0,34,27:0:0:34,27:1212,952:-176.658,-77.861,-67.626,-99.1513,0,-91.0235	1/1:88:0,87,0:0:0:87,0:3120,0:-280.775,-26.1896,0,-280.775,-26.1896,-280.775	1/2:79:0,42,36:0:0:42,36:1493,1251:-223.348,-101.68,-89.0365,-121.66,0,-110.822	1/1:121:0,121,0:0:0:121,0:4310,0:-388.073,-36.4246,0,-388.073,-36.4246,-388.073	1/1:65:0,65,0:0:0:65,0:2328,0:-209.777,-19.567,0,-209.777,-19.567,-209.777	1/1:60:0,59,0:0:0:59,0:2119,0:-190.619,-17.7608,0,-190.619,-17.7608,-190.619	1/2:55:0,29,25:0:0:29,25:1044,894:-158.091,-72.9043,-64.1744,-85.1947,0,-77.669	1/2:190:0,99,91:0:0:99,91:3545,3233:-552.897,-263.799,-233.997,-289.455,0,-262.061	1/2:149:0,73,74:0:0:73,74:2609,2584:-422.892,-210.166,-188.191,-212.72,0,-190.444	1/1:110:0,110,0:0:0:110,0:3931,0:-353.949,-33.1133,0,-353.949,-33.1133,-353.949	1/1:101:0,101,0:0:0:101,0:3605,0:-324.586,-30.404,0,-324.586,-30.404,-324.586	1/1:128:0,121,7:0:0:121,7:4318,248:-388.417,-36.4246,0,-368.214,-15.8674,-366.107	1/2:127:0,67,59:0:0:67,59:2395,2065:-363.12,-167.976,-147.807,-195.137,0,-177.376	1/2:147:0,80,67:0:0:80,67:2857,2359:-425.329,-192.4,-168.317,-233.283,0,-213.114	1/2:392:0,213,175:0:0:213,175:7622,6159:-1122.97,-501.432,-437.313,-621.604,0,-568.924	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/2:348:0,174,174:0:0:174,174:6248,6117:-1007.92,-498.256,-445.877,-510.016,0,-457.636	1/1:162:0,161,1:0:0:161,1:5739,36:-516.264,-48.4658,0,-513.326,-45.1686,-513.025	1/1:122:0,121,0:0:0:121,0:4338,0:-390.104,-36.4246,0,-390.104,-36.4246,-390.104	1/2:10:0,1,9:0:0:1,9:36,320:-29.3711,-26.4332,-26.1322,-3.29724,0,-0.587975	1/2:20:0,7,13:0:0:7,13:237,455:-56.5788,-37.3694,-35.2622,-19.5518,0,-15.6385	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:15:0,14,1:0:0:14,1:485,32:-43.6553,-4.21442,0,-41.0787,-1.31614,-40.7777	1/1:210:0,208,0:0:0:208,0:7476,0:-672.598,-62.6142,0,-672.598,-62.6142,-672.598	1/1:164:0,164,0:0:0:164,0:5869,0:-528.316,-49.3689,0,-528.316,-49.3689,-528.316	1/1:79:0,78,0:0:0:78,0:2804,0:-252.239,-23.4803,0,-252.239,-23.4803,-252.239	2/2:6:0,0,6:0:0:0,6:0,208:-19.0551,-19.0551,-19.0551,-1.80618,-1.80618,0	1/2:169:0,85,82:0:0:85,82:3041,2901:-484.255,-236.28,-210.692,-247.971,0,-223.286	1/2:50:0,25,25:0:0:25,25:900,885:-145.88,-72.4421,-64.9163,-73.7953,0,-66.2695	1/1:122:0,122,0:0:0:122,0:4339,0:-390.683,-36.7257,0,-390.683,-36.7257,-390.683	1/1:50:0,50,0:0:0:50,0:1792,0:-161.562,-15.0515,0,-161.562,-15.0515,-161.562	1/1:55:0,53,1:0:0:53,1:1900,36:-170.918,-15.9546,0,-167.981,-13.0172,-167.68	1/2:71:0,37,33:0:0:37,33:1309,1149:-200.104,-93.4814,-82.3433,-106.719,0,-96.7849	1/1:165:0,165,0:0:0:165,0:5895,0:-530.655,-49.67,0,-530.655,-49.67,-530.655	1/2:162:0,86,76:0:0:86,76:3080,2666:-468.491,-217.306,-191.417,-251.54,0,-228.661	1/2:103:0,64,39:0:0:64,39:2285,1341:-295.47,-109.175,-89.9095,-186.644,0,-174.903	1/2:96:0,42,54:0:0:42,54:1512,1900:-278.343,-154.968,-142.325,-123.731,0,-107.476	1/1:246:0,245,1:0:0:245,1:8736,30:-785.926,-73.7524,0,-783.528,-71.0538,-783.227	1/2:16:0,6,10:0:0:6,10:216,357:-47.0875,-29.4619,-27.6557,-17.9843,0,-14.974	1/2:163:0,82,81:0:0:82,81:2940,2877:-474.569,-234.776,-210.092,-240.149,0,-215.766	1/1:65:0,64,1:0:0:64,1:2304,30:-207.32,-19.2659,0,-204.922,-16.5674,-204.621	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:199:0,198,0:0:0:198,0:7112,0:-639.792,-59.6039,0,-639.792,-59.6039,-639.792	1/2:74:0,36,38:0:0:36,38:12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chr04	170523	.	ACG	ACA	25563.5	PASS	AB=0.452865;ABP=76.0898;AC=41;AF=0.218085;AN=188;AO=1729;CIGAR=2M1X;DP=8901;DPB=8901;DPRA=1.17935;EPP=3757.49;EPPR=15507.3;GTI=4;LEN=1;MEANALT=1.24444;MQM=40.5865;MQMR=53.7078;NS=94;NUMALT=1;ODDS=0.991025;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61757;QR=246728;RO=7140;RPL=1729;RPP=3757.49;RPPR=15507.3;RPR=0;RUN=1;SAF=0;SAP=3757.49;SAR=1729;SRF=0;SRP=15507.3;SRR=7140;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:899:0:0:0,-7.82678,-81.042	0/0:127:123,3:123:4179:3:108:0,-28.6778,-364.9	0/0:160:158,0:158:5424:0:0:0,-47.5627,-485.045	0/1:146:76,70:76:2635:70:2504:-174.469,0,-192.916	0/0:33:33,0:33:1139:0:0:0,-9.93399,-102.514	0/0:24:24,0:24:829:0:0:0,-7.22472,-74.4587	0/1:87:53,33:53:1832:33:1180:-75.2461,0,-138.587	0/0:215:213,0:213:7246:0:0:0,-64.1194,-649.1	0/1:53:25,28:25:869:28:1008:-69.7517,0,-62.3298	0/0:125:125,0:125:4281:0:0:0,-37.6287,-384.75	0/1:70:36,34:36:1247:34:1220:-84.9253,0,-91.206	0/0:78:78,0:78:2670:0:0:0,-23.4803,-239.667	0/1:91:48,43:48:1678:43:1548:-102.69,0,-123.259	0/0:112:112,0:112:3880:0:0:0,-33.7154,-348.28	0/1:73:42,29:42:1472:29:1044:-68.5607,0,-110.839	0/0:60:60,0:60:2073:0:0:0,-18.0618,-186.188	0/0:75:75,0:75:2579:0:0:0,-22.5772,-230.876	0/0:68:68,0:68:2375:0:0:0,-20.47,-212.746	0/1:40:17,23:17:587:23:828:-57.5931,0,-40.2891	0/1:148:89,59:89:3059:59:2120:-139.667,0,-228.699	0/1:102:49,53:49:1669:53:1908:-132.603,0,-119.398	0/0:134:134,0:134:4631:0:0:0,-40.338,-416.331	0/0:87:85,0:85:2935:0:0:0,-25.5875,-263.646	0/0:136:135,1:135:4728:1:36:0,-37.4856,-420.904	0/1:96:59,36:59:2059:36:1287:-82.182,0,-155.425	0/1:358:203,154:203:6952:154:5436:-368.966,0,-516.529	0/1:227:118,109:118:4104:109:3908:-267.468,0,-299.109	0/0:33:33,0:33:1143:0:0:0,-9.93399,-101.983	0/1:306:180,123:180:6206:123:4393:-294.372,0,-466.026	0/0:112:111,1:111:3899:1:32:0,-30.5792,-346.913	0/0:93:92,0:92:3147:0:0:0,-27.6948,-282.629	1/1:5:0,5:0:0:5:176:-15.5978,-1.50515,0	0/1:27:10,17:10:348:17:612:-45.0107,0,-23.4786	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	0/0:8:8,0:8:275:0:0:0,-2.40824,-24.8154	0/1:5:4,1:4:136:1:36:-1.88245,0,-11.0377	0/0:205:205,0:205:7150:0:0:0,-61.7111,-642.708	0/0:342:341,1:341:11716:1:36:0,-99.4978,-1047.09	0/0:73:73,0:73:2544:0:0:0,-21.9752,-227.575	0/1:2:1,1:1:36:1:36:-2.85243,0,-2.99111	0/1:82:35,47:35:1208:47:1672:-119.054,0,-84.2015	0/1:48:23,25:23:798:25:896:-61.6589,0,-57.4305	0/0:128:128,0:128:4465:0:0:0,-38.5318,-399.782	0/0:77:77,0:77:2714:0:0:0,-23.1793,-243.034	0/0:57:56,0:56:1825:0:0:0,-16.8577,-163.874	0/1:31:22,9:22:766:9:324:-19.2255,0,-59.9083	0/0:122:120,0:120:4105:0:0:0,-36.1236,-367.467	0/1:153:89,64:89:3085:64:2288:-153.119,0,-231.422	0/1:101:59,42:59:2026:42:1495:-98.6078,0,-151.856	0/1:192:110,82:110:3820:82:2933:-196.148,0,-285.544	0/0:144:143,0:143:4965:0:0:0,-43.0473,-446.374	0/1:9:8,1:8:272:1:36:-0.793429,0,-22.0849	0/1:115:70,45:70:2458:45:1596:-101.296,0,-186.063	0/0:23:23,0:23:797:0:0:0,-6.92369,-72.0147	0/0:13:13,0:13:458:0:0:0,-3.91339,-41.091	0/0:135:135,0:135:4591:0:0:0,-40.639,-411.829	0/1:23:8,15:8:278:15:532:-39.0882,0,-18.3322	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5328	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.4963	0/0:34:33,0:33:1121:0:0:0,-9.93399,-100.168	0/1:124:59,65:59:2096:65:2328:-164.408,0,-151.216	0/1:5:1,4:1:36:4:135:-10.6999,0,-2.09053	0/0:206:206,0:206:7051:0:0:0,-62.0122,-633.043	0/1:196:107,89:107:3724:89:3186:-217.868,0,-275.622	0/1:45:29,16:29:1012:16:557:-35.0229,0,-77.597	0/0:111:111,0:111:3793:0:0:0,-33.4143,-340.45	0/0:164:164,0:164:5612:0:0:0,-49.3689,-503.578	0/1:99:46,53:46:1601:53:1892:-136.194,0,-114.259	0/0:54:54,0:54:1877:0:0:0,-16.2556,-168.621	0/1:54:24,27:24:857:27:949:-64.9107,0,-61.3723	0/0:79:79,0:79:2738:0:0:0,-23.7814,-246.203	0/0:28:28,0:28:954:0:0:0,-8.42884,-85.6618	0/0:96:96,0:96:3238:0:0:0,-28.8989,-290.148	0/1:80:47,33:47:1631:33:1188:-76.7575,0,-122.34	0/1:95:55,39:55:1890:39:1392:-90.0541,0,-141.213	0/0:146:146,0:146:5089:0:0:0,-43.9504,-457.314	0/0:125:125,0:125:4373:0:0:0,-37.6287,-390.389	0/1:70:35,35:35:1189:35:1247:-83.5717,0,-85.9744	0/0:9:9,0:9:311:0:0:0,-2.70927,-27.8887	0/0:108:108,0:108:3737:0:0:0,-32.5112,-335.447	0/0:106:105,0:105:3660:0:0:0,-31.6081,-327.491	0/0:190:188,0:188:6513:0:0:0,-56.5936,-584.768	0/1:115:53,60:53:1856:60:2148:-152.921,0,-132.724	0/0:68:68,0:68:2390:0:0:0,-20.47,-215.03	0/0:104:104,0:104:3581:0:0:0,-31.3071,-321.513	0/0:119:116,3:116:4070:3:108:0,-26.1611,-355.689	0/1:42:23,18:23:783:18:640:-39.7264,0,-57.8397	0/0:72:72,0:72:2503:0:0:0,-21.6742,-224.256	0/0:78:77,0:77:2671:0:0:0,-23.1793,-239.21	0/1:65:34,31:34:1168:31:1116:-76.6,0,-85.5154	0/1:128:77,51:77:2678:51:1820:-117.056,0,-202.102	0/1:84:33,51:33:1123:51:1823:-134.288,0,-75.8944	0/0:78:78,0:78:2703:0:0:0,-23.4803,-242.671	0/0:86:86,0:86:3036:0:0:0,-25.8886,-272.725
chr04	252199	.	CCTCT	TCTCT	101168	PASS	AB=0.437151;ABP=82.984;AC=144;AF=0.782609;AN=184;AO=3772;CIGAR=1X4M;DP=5113;DPB=5113.4;DPRA=0;EPP=555.895;EPPR=129.281;GTI=2;LEN=1;MEANALT=1.29348;MQM=57.5933;MQMR=59.8794;NS=92;NUMALT=1;ODDS=0.117751;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=0;PRO=1;QA=135140;QR=46300;RO=1310;RPL=1396;RPP=555.895;RPPR=129.281;RPR=2376;RUN=1;SAF=3772;SAP=8193.8;SAR=0;SRF=1310;SRP=2847.64;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1332:-120.152,-11.1381,0	1/1:14:0,14:0:0:14:496:-44.9675,-4.21442,0	1/1:63:0,63:0:0:63:2260:-203.64,-18.9649,0	0/1:112:61,51:61:2141:51:1836:-131.685,0,-159.171	1/1:32:0,31:0:0:31:1100:-98.5832,-9.33193,0	1/1:24:0,24:0:0:24:864:-78.0349,-7.22472,0	0/1:47:17,30:17:593:30:1076:-82.8733,0,-39.5477	1/1:41:0,41:0:0:41:1476:-133.095,-12.3422,0	0/1:36:18,18:18:632:18:644:-47.3763,0,-46.3681	1/1:39:0,36:0:0:36:1292:-116.167,-10.8371,0	0/1:49:31,18:31:1088:18:644:-43.374,0,-83.4785	1/1:56:0,55:0:0:55:1980:-177.956,-16.5567,0	0/1:71:26,45:26:931:45:1607:-123.42,0,-62.735	1/1:54:0,54:0:0:54:1920:-173.034,-16.2556,0	0/1:80:47,33:47:1684:33:1179:-82.2445,0,-127.765	1/1:62:0,62:0:0:62:2224:-200.152,-18.6639,0	1/1:25:0,25:0:0:25:896:-80.9303,-7.52575,0	1/1:33:0,33:0:0:33:1184:-106.788,-9.93399,0	0/1:25:15,10:15:534:10:360:-25.2121,0,-40.8685	0/1:44:17,27:17:608:27:968:-74.0699,0,-41.7988	0/1:65:33,31:33:1161:31:1116:-81.1065,0,-85.1709	1/1:37:0,37:0:0:37:1328:-119.679,-11.1381,0	1/1:54:0,54:0:0:54:1927:-173.426,-16.2556,0	1/1:22:1,21:1:36:21:752:-64.3623,-3.02439,0	0/1:15:9,6:9:315:6:216:-15.2735,0,-24.1725	0/1:176:97,78:97:3432:78:2767:-196.172,0,-256.101	0/1:110:64,45:64:2284:45:1616:-112.469,0,-172.652	1/1:60:0,60:0:0:60:2147:-193.385,-18.0618,0	0/1:89:47,40:47:1643:40:1436:-102.862,0,-121.616	1/1:69:4,65:4:144:65:2336:-197.108,-7.45745,0	1/1:49:0,49:0:0:49:1759:-158.218,-14.7505,0	0/1:3:2,1:2:71:1:36:-2.69518,0,-5.83897	0/1:24:14,10:14:492:10:360:-25.5102,0,-37.386	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83534,-0.60206,0	0/1:12:4,8:4:124:8:288:-22.6523,0,-7.85499	1/1:157:0,156:0:0:156:5597:-503.073,-46.9607,0	1/1:41:0,41:0:0:41:1476:-133.031,-12.3422,0	1/1:30:0,30:0:0:30:1080:-97.4262,-9.0309,0	.:.:.:.:.:.:.:.	0/1:101:67,33:67:2366:33:1184:-76.4425,0,-182.822	0/1:38:25,12:25:881:12:432:-27.7222,0,-68.1471	1/1:68:0,67:0:0:67:2400:-215.889,-20.169,0	1/1:59:0,59:0:0:59:2113:-190.028,-17.7608,0	1/1:56:0,56:0:0:56:2012:-180.867,-16.8577,0	0/1:46:29,17:29:1013:17:612:-41.5506,0,-77.6328	1/1:63:0,63:0:0:63:2249:-202.516,-18.9649,0	0/1:84:52,32:52:1842:32:1136:-77.2175,0,-140.771	0/1:26:22,4:22:777:4:144:-5.47492,0,-62.4224	0/1:74:40,34:40:1426:34:1216:-87.4203,0,-106.359	1/1:37:0,36:0:0:36:1292:-116.198,-10.8371,0	0/1:9:4,5:4:138:5:180:-13.8388,0,-10.0508	0/1:98:64,33:64:2254:33:1184:-77.2207,0,-173.559	1/1:20:0,20:0:0:20:716:-64.7501,-6.0206,0	1/1:3:0,3:0:0:3:108:-10.0742,-0.90309,0	1/1:93:0,92:0:0:92:3304:-296.892,-27.6948,0	0/1:28:9,19:9:316:19:680:-53.0256,0,-20.3489	1/1:7:0,7:0:0:7:252:-22.8807,-2.10721,0	0/1:11:9,2:9:323:2:72:-3.52348,0,-26.1028	1/1:32:0,32:0:0:32:1152:-103.952,-9.63296,0	0/1:92:36,55:36:1273:55:1952:-148.021,0,-87.1169	0/1:5:3,2:3:108:2:72:-5.32664,0,-8.57002	1/1:122:2,119:2:67:119:4280:-378.784,-30.4092,0	0/1:72:37,35:37:1303:35:1237:-89.8742,0,-95.8948	0/1:33:10,23:10:354:23:828:-64.8999,0,-22.2661	1/1:58:0,56:0:0:56:2008:-180.461,-16.8577,0	1/1:76:2,74:2:67:74:2652:-232.154,-16.5154,0	0/1:85:54,29:54:1905:29:1025:-67.1792,0,-146.381	1/1:32:0,32:0:0:32:1146:-103.147,-9.63296,0	0/1:34:19,15:19:670:15:536:-38.3352,0,-50.3903	1/1:47:0,46:0:0:46:1656:-148.911,-13.8474,0	1/1:30:0,28:0:0:28:1008:-90.7465,-8.42884,0	1/1:55:0,55:0:0:55:1959:-176.557,-16.5567,0	0/1:55:28,27:28:990:27:968:-70.8543,0,-72.8577	0/1:54:33,21:33:1162:21:756:-52.0977,0,-88.6085	1/1:122:0,122:0:0:122:4377:-393.33,-36.7257,0	1/1:49:0,49:0:0:49:1764:-158.894,-14.7505,0	0/1:138:83,55:83:2939:55:1972:-136.191,0,-223.201	1/1:7:0,7:0:0:7:252:-23.0271,-2.10721,0	1/1:72:1,71:1:27:71:2548:-226.743,-18.9744,0	1/1:64:0,64:0:0:64:2296:-206.837,-19.2659,0	1/1:84:0,83:0:0:83:2967:-266.573,-24.9855,0	0/1:61:37,23:37:1323:23:828:-55.9697,0,-100.967	1/1:76:0,76:0:0:76:2732:-245.933,-22.8783,0	1/1:38:0,38:0:0:38:1364:-122.993,-11.4391,0	1/1:108:2,105:2:72:105:3745:-330.233,-25.6601,0	0/1:22:13,9:13:464:9:324:-22.8804,0,-35.4752	1/1:57:0,57:0:0:57:2039:-183.756,-17.1587,0	1/1:68:0,68:0:0:68:2425:-218.457,-20.47,0	0/1:50:23,27:23:812:27:972:-72.6885,0,-58.3478	0/1:102:55,45:55:1940:45:1607:-114.397,0,-144.413	0/1:55:44,11:44:1575:11:396:-19.3926,0,-125.483	1/1:98:0,98:0:0:98:3507:-315.692,-29.5009,0	1/1:80:0,80:0:0:80:2857:-257.114,-24.0824,0
chr04	252209	.	T	G	22149.1	PASS	AB=0.555217;ABP=63.921;AC=40;AF=0.217391;AN=184;AO=1288;CIGAR=1X;DP=5041;DPB=5041;DPRA=1.20884;EPP=2791.19;EPPR=8133;GTI=1;LEN=1;MEANALT=1.08511;MQM=59.8509;MQMR=57.5545;NS=92;NUMALT=1;ODDS=0.191806;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46068;QR=133580;RO=3744;RPL=1287;RPP=2791.19;RPPR=8133;RPR=1;RUN=1;SAF=1288;SAP=2799.87;SAR=0;SRF=3744;SRP=8133;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.747	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2148	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.951	0/1:110:50,60:50:1781:60:2138:-159.486,0,-127.339	0/0:32:32,0:32:1137:0:0:0,-9.63296,-101.97	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.6747	0/1:44:28,16:28:990:16:576:-38.9297,0,-76.0399	0/0:41:41,0:41:1454:0:0:0,-12.3422,-131.116	0/1:34:18,14:18:644:14:500:-35.3437,0,-48.2208	0/0:39:39,0:39:1381:0:0:0,-11.7402,-124.394	0/1:48:17,31:17:608:31:1097:-84.5886,0,-40.5229	0/0:54:54,0:54:1917:0:0:0,-16.2556,-172.574	0/1:72:46,26:46:1640:26:924:-61.8026,0,-126.088	0/0:51:51,0:51:1786:0:0:0,-15.3525,-160.979	0/1:83:36,47:36:1272:47:1684:-126.862,0,-89.7018	0/0:59:59,0:59:2111:0:0:0,-17.7608,-189.989	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1655	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.911	0/1:26:11,15:11:392:15:536:-40.748,0,-27.7869	0/1:44:27,17:27:964:17:612:-42.1599,0,-73.7107	0/1:64:32,32:32:1140:32:1148:-84.3639,0,-83.6023	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.424	0/0:54:53,0:53:1900:0:0:0,-15.9546,-170.77	0/0:22:20,1:20:711:1:36:0,-3.0182,-60.7536	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2735	0/1:171:77,94:77:2764:94:3371:-252.055,0,-197.293	0/1:109:46,63:46:1644:63:2264:-171.21,0,-115.318	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.477	0/1:87:42,45:42:1504:45:1616:-119.539,0,-109.194	0/0:70:66,4:66:2351:4:144:0,-7.75848,-198.456	0/0:50:50,0:50:1782:0:0:0,-15.0515,-160.274	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:24:10,14:10:356:14:504:-38.4718,0,-25.1472	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83534	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9533	0/0:154:154,0:154:5496:0:0:0,-46.3586,-494.19	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.672	0/0:31:31,0:31:1097:0:0:0,-9.33193,-98.9509	.:.:.:.:.:.:.:.	0/1:103:34,69:34:1224:69:2451:-189.834,0,-79.4107	0/1:36:12,24:12:432:24:864:-67.2455,0,-28.3462	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.736	0/0:56:55,0:55:1923:0:0:0,-16.5566,-172.715	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.157	0/1:47:18,29:18:648:29:1031:-78.9542,0,-44.4871	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.125	0/1:85:33,52:33:1188:52:1860:-142.09,0,-81.5917	0/1:26:4,22:4:144:22:781:-62.7828,0,-5.47492	0/1:72:32,40:32:1125:40:1440:-108.224,0,-79.8383	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.687	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9017	0/1:96:33,63:33:1164:63:2252:-174.038,0,-76.0783	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1106	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0742	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.647	0/1:28:19,9:19:684:9:314:-20.1672,0,-53.3867	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.5661	0/1:10:2,8:2:63:8:288:-23.2562,0,-2.97178	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.512	0/1:90:53,37:53:1893:37:1320:-92.007,0,-143.377	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.32664	0/0:122:121,1:121:4356:1:36:0,-33.1274,-388.334	0/1:71:37,34:37:1324:34:1220:-88.7321,0,-98	0/1:33:22,11:22:783:11:396:-26.0472,0,-60.8496	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.249	0/0:76:72,2:72:2565:2:72:0,-15.7694,-223.981	0/1:82:27,55:27:955:55:1972:-153.069,0,-61.4921	0/0:32:32,0:32:1130:0:0:0,-9.63296,-101.979	0/1:33:15,18:15:532:18:648:-48.7179,0,-38.2745	0/0:44:43,1:43:1533:1:25:0,-10.8241,-135.146	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.664	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.269	0/1:56:28,27:28:1004:27:962:-69.98,0,-73.7297	0/1:52:21,31:21:756:31:1116:-85.0757,0,-52.6997	0/0:120:119,0:119:4248:0:0:0,-35.8226,-381.464	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.132	0/1:136:53,83:53:1908:83:2976:-227.13,0,-131.036	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0271	0/0:71:70,1:70:2516:1:36:0,-17.7749,-222.967	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.548	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.083	0/1:63:25,38:25:883:38:1364:-104.085,0,-60.304	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.052	0/0:37:37,0:37:1292:0:0:0,-11.1381,-116.523	0/0:108:107,1:107:3773:1:36:0,-28.913,-335.933	0/1:22:9,13:9:324:13:464:-35.4748,0,-22.8804	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.487	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.817	0/1:50:28,22:28:1008:22:784:-55.8324,0,-75.927	0/1:97:43,54:43:1522:54:1914:-143.336,0,-108.013	0/1:54:11,43:11:396:43:1544:-122.995,0,-19.7051	0/0:96:96,0:96:3412:0:0:0,-28.8989,-307.153	0/0:78:78,0:78:2776:0:0:0,-23.4803,-249.805
chr04	252210	.	C	T	79958.8	PASS	AB=0.440671;ABP=74.1256;AC=144;AF=0.782609;AN=184;AO=3796;CIGAR=1X;DP=5108;DPB=5108;DPRA=0;EPP=8245.92;EPPR=2843.3;GTI=2;LEN=1;MEANALT=1;MQM=57.5319;MQMR=59.8498;NS=92;NUMALT=1;ODDS=0.0216214;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135626;QR=46684;RO=1312;RPL=3796;RPP=8245.92;RPPR=2843.3;RPR=0;RUN=1;SAF=3796;SAP=8245.92;SAR=0;SRF=1312;SRP=2851.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1296:-116.914,-10.8371,0	1/1:14:0,14:0:0:14:504:-45.6908,-4.21442,0	1/1:62:0,62:0:0:62:2228:-200.761,-18.6639,0	0/1:111:60,51:60:2139:51:1820:-130.549,0,-159.276	1/1:33:0,33:0:0:33:1150:-103.508,-9.93399,0	1/1:24:0,24:0:0:24:864:-78.0349,-7.22472,0	0/1:47:17,30:17:608:30:1076:-82.8721,0,-40.9036	1/1:41:0,41:0:0:41:1463:-131.925,-12.3422,0	0/1:35:17,18:17:608:18:648:-48.0386,0,-44.516	1/1:38:0,38:0:0:38:1364:-122.867,-11.4391,0	0/1:51:32,19:32:1135:19:684:-46.3679,0,-87.1054	1/1:55:0,55:0:0:55:1937:-174.375,-16.5567,0	0/1:70:26,44:26:932:44:1562:-119.779,0,-63.1259	1/1:54:0,54:0:0:54:1917:-172.691,-16.2556,0	0/1:81:47,34:47:1688:34:1212:-84.9504,0,-127.824	1/1:61:0,61:0:0:61:2150:-193.495,-18.3628,0	1/1:26:0,26:0:0:26:914:-82.548,-7.82678,0	1/1:31:0,31:0:0:31:1078:-97.2451,-9.33193,0	0/1:26:15,11:15:523:11:392:-27.7874,0,-39.5717	0/1:44:17,27:17:608:27:968:-74.0699,0,-41.7985	0/1:63:34,29:34:1203:29:1035:-74.4816,0,-89.6101	1/1:39:0,39:0:0:39:1400:-126.153,-11.7402,0	1/1:54:0,54:0:0:54:1935:-174.226,-16.2556,0	1/1:22:1,21:1:36:21:739:-63.2089,-3.02439,0	0/1:16:9,7:9:320:7:248:-17.8462,0,-24.3259	0/1:172:96,76:96:3412:76:2732:-194.168,0,-255.458	0/1:110:64,46:64:2283:46:1656:-116.095,0,-172.616	1/1:60:0,60:0:0:60:2143:-193.026,-18.0618,0	0/1:89:46,43:46:1627:43:1535:-111.44,0,-119.926	1/1:71:4,67:4:144:67:2404:-203.222,-8.05951,0	1/1:51:0,51:0:0:51:1825:-164.288,-15.3525,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:23:13,10:13:460:10:360:-25.8113,0,-34.8111	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83534,-0.60206,0	0/1:12:4,8:4:127:8:288:-22.6523,0,-8.13207	1/1:157:0,157:0:0:157:5620:-505.367,-47.2617,0	1/1:42:0,42:0:0:42:1504:-135.549,-12.6433,0	1/1:31:0,31:0:0:31:1108:-99.9441,-9.33193,0	.:.:.:.:.:.:.:.	0/1:102:69,33:69:2484:33:1156:-73.5912,0,-193.103	0/1:38:26,12:26:917:12:428:-27.3818,0,-71.4054	1/1:69:0,69:0:0:69:2476:-222.841,-20.7711,0	1/1:58:0,58:0:0:58:2076:-186.84,-17.4597,0	1/1:55:0,55:0:0:55:1976:-177.679,-16.5567,0	0/1:47:29,18:29:1031:18:648:-44.4871,0,-78.954	1/1:61:0,61:0:0:61:2174:-195.773,-18.3628,0	0/1:85:52,33:52:1864:33:1180:-80.8716,0,-142.451	0/1:26:22,4:22:783:4:144:-5.47492,0,-62.9615	0/1:74:40,34:40:1428:34:1208:-86.7014,0,-106.539	1/1:37:0,37:0:0:37:1323:-119.284,-11.1381,0	0/1:9:4,5:4:144:5:180:-13.8388,0,-10.6043	0/1:94:62,32:62:2211:32:1152:-75.6063,0,-170.951	1/1:21:0,21:0:0:21:747:-67.536,-6.32163,0	1/1:3:0,3:0:0:3:108:-10.0742,-0.90309,0	1/1:93:0,93:0:0:93:3307:-297.589,-27.9958,0	0/1:28:9,19:9:324:19:684:-53.3867,0,-21.0755	1/1:7:0,7:0:0:7:252:-22.8807,-2.10721,0	0/1:11:9,2:9:316:2:63:-2.67075,0,-25.4666	1/1:32:0,32:0:0:32:1152:-103.95,-9.63296,0	0/1:91:37,54:37:1319:54:1936:-146.943,0,-91.6124	0/1:5:3,2:3:108:2:72:-5.32664,0,-8.57002	1/1:123:1,122:1:36:122:4383:-390.763,-33.4284,0	0/1:73:37,36:37:1310:36:1296:-94.8797,0,-96.2234	0/1:34:11,23:11:392:23:828:-64.5989,0,-25.3835	1/1:58:0,58:0:0:58:2050:-184.601,-17.4597,0	1/1:78:2,76:2:72:76:2725:-238.241,-16.6436,0	0/1:85:56,29:56:1997:29:1022:-66.663,0,-154.413	1/1:30:0,30:0:0:30:1076:-97.1244,-9.0309,0	0/1:34:19,15:19:684:15:540:-38.697,0,-51.6553	1/1:48:0,48:0:0:48:1696:-152.158,-14.4494,0	1/1:32:0,32:0:0:32:1140:-102.733,-9.63296,0	1/1:57:0,57:0:0:57:2033:-183.206,-17.1587,0	0/1:55:28,27:28:1008:27:972:-71.2118,0,-74.4797	0/1:53:32,21:32:1113:21:741:-51.0446,0,-84.4953	1/1:121:0,121:0:0:121:4308:-387.155,-36.4246,0	1/1:50:0,50:0:0:50:1796:-161.773,-15.0515,0	0/1:137:84,53:84:3003:53:1887:-128.848,0,-228.48	1/1:7:0,7:0:0:7:252:-23.0271,-2.10721,0	1/1:72:0,72:0:0:72:2584:-232.679,-21.6742,0	1/1:66:0,66:0:0:66:2367:-213.222,-19.868,0	1/1:83:0,83:0:0:83:2966:-266.838,-24.9855,0	0/1:62:38,24:38:1319:24:860:-58.5644,0,-100.331	1/1:75:0,75:0:0:75:2679:-241.169,-22.5773,0	1/1:38:0,38:0:0:38:1355:-122.186,-11.4391,0	1/1:104:2,102:2:72:102:3659:-322.455,-24.4704,0	0/1:21:12,9:12:432:9:320:-22.8185,0,-32.8996	1/1:53:0,53:0:0:53:1904:-171.613,-15.9546,0	1/1:69:1,68:1:36:68:2427:-214.983,-17.1728,0	0/1:50:22,28:22:783:28:1008:-75.927,0,-55.7414	0/1:103:57,46:57:2008:46:1644:-117.182,0,-149.985	0/1:56:44,12:44:1565:12:432:-22.3277,0,-124.282	1/1:99:0,99:0:0:99:3551:-319.647,-29.802,0	1/1:79:0,79:0:0:79:2816:-253.413,-23.7814,0
chr04	383636	.	G	A	81016.8	PASS	AB=0.625805;ABP=1604.4;AC=104;AF=0.553191;AN=188;AO=7716;CIGAR=1X;DP=12142;DPB=12142;DPRA=0;EPP=16602.1;EPPR=7624.75;GTI=15;LEN=1;MEANALT=1.01064;MQM=26.5216;MQMR=22.0016;NS=94;NUMALT=1;ODDS=1.27086;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=276656;QR=158049;RO=4425;RPL=7499;RPP=14926.3;RPPR=739.409;RPR=217;RUN=1;SAF=7495;SAP=14893.5;SAR=221;SRF=2587;SRP=278.309;SRR=1838;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:100:25,75:25:875:75:2673:-142.005,0,-18.1261	0/1:108:47,61:47:1680:61:2196:-87.4431,0,-50.8673	0/1:248:96,152:96:3411:152:5452:-219.884,0,-123.955	0/1:198:55,143:55:1963:143:5120:-310.156,0,-44.4603	0/1:121:29,92:29:1021:92:3289:-187.285,0,-24.479	0/1:54:21,33:21:752:33:1180:-61.597,0,-17.0708	0/1:86:48,38:48:1720:38:1364:-76.7365,0,-58.4238	0/1:235:65,170:65:2327:170:6116:-259.903,0,-39.1927	0/1:143:38,105:38:1355:105:3773:-210.611,0,-18.7995	0/1:119:45,74:45:1612:74:2656:-152.205,0,-60.4336	0/1:141:85,56:85:3019:56:2008:-86.0148,0,-111.744	0/1:210:124,86:124:4403:86:3084:-146.955,0,-168.085	0/1:141:76,65:76:2720:65:2338:-82.2088,0,-80.5973	0/1:149:92,57:92:3300:57:2052:-75.1366,0,-139.82	0/1:145:62,83:62:2186:83:2980:-143.366,0,-70.3327	0/1:137:67,70:67:2404:70:2500:-124.255,0,-74.5331	0/1:115:88,27:88:3139:27:972:-16.8753,0,-100.548	0/1:107:83,24:83:2963:24:851:-13.8756,0,-92.5875	0/1:83:58,25:58:2084:25:900:-30.8821,0,-54.5912	0/1:199:56,143:56:2008:143:5140:-299.265,0,-51.5062	0/1:167:28,139:28:1004:139:4988:-284.7,0,-1.6123	0/1:91:16,75:16:572:75:2684:-155.708,0,-13.0055	0/1:106:22,84:22:788:84:3024:-177.166,0,-18.7985	0/1:99:30,69:30:1076:69:2480:-120.875,0,-30.9589	0/1:92:21,71:21:752:71:2540:-144.195,0,-8.3013	0/1:261:63,198:63:2246:198:7099:-401.098,0,-44.0577	0/1:251:51,200:51:1832:200:7172:-412.056,0,-16.488	0/1:87:48,39:48:1716:39:1404:-61.8875,0,-69.5735	0/1:330:72,258:72:2588:258:9283:-529.13,0,-27.7893	0/1:90:30,60:30:1076:60:2142:-106.125,0,-29.7754	0/1:119:39,80:39:1392:80:2876:-146.242,0,-53.3721	1/1:10:0,10:0:0:10:360:-21.5991,-3.0103,0	1/1:26:4,22:4:144:22:788:-42.1093,-2.01897,0	0/1:8:2,6:2:72:6:216:-9.15132,0,-0.341107	1/1:19:3,16:3:108:16:576:-26.4965,-1.52889,0	1/1:32:2,30:2:72:30:1076:-60.3471,-6.88554,0	0/1:377:191,186:191:6843:186:6688:-336.879,0,-347.015	1/1:92:11,81:11:392:81:2904:-163.93,-5.76275,0	0/1:134:96,38:96:3416:38:1364:-43.5007,0,-115.199	1/1:14:1,13:1:36:13:468:-28.4882,-2.81704,0	0/1:169:46,123:46:1627:123:4406:-209.417,0,-41.2262	0/1:65:38,27:38:1356:27:972:-38.64,0,-47.5409	0/1:234:48,186:48:1720:186:6656:-366.87,0,-29.4819	0/1:124:76,48:76:2719:48:1720:-80.1766,0,-127.947	0/1:133:78,55:78:2736:55:1980:-85.421,0,-132.486	0/1:99:16,83:16:576:83:2967:-193.52,0,-3.63578	0/1:163:32,131:32:1140:131:4700:-204.243,0,-10.4588	0/1:240:39,201:39:1392:201:7186:-385.609,0,-4.25221	0/1:94:23,71:23:828:71:2539:-148.525,0,-17.1826	0/1:152:35,117:35:1251:117:4204:-247.695,0,-27.3476	0/1:142:57,85:57:2040:85:3056:-186.107,0,-98.3295	1/1:37:3,34:3:99:34:1201:-69.0372,-6.13915,0	0/1:117:37,80:37:1324:80:2861:-142.964,0,-22.3178	0/1:54:14,40:14:500:40:1432:-96.003,0,-19.1808	0/1:5:3,2:3:108:2:72:-2.64284,0,-2.68553	0/1:170:37,133:37:1303:133:4778:-232.972,0,-28.0279	0/1:51:12,39:12:432:39:1400:-90.371,0,-4.47188	0/1:15:2,13:2:72:13:468:-27.2697,0,-1.14798	0/1:28:7,21:7:244:21:752:-45.2913,0,-3.95543	0/1:94:24,70:24:860:70:2514:-136.793,0,-21.9804	0/1:198:110,88:110:3948:88:3168:-141.701,0,-142.14	1/1:19:1,18:1:36:18:648:-41.4713,-4.72055,0	0/1:117:29,88:29:1027:88:3168:-176.556,0,-33.6517	0/1:201:47,154:47:1688:154:5504:-283.601,0,-26.4021	0/1:80:16,64:16:576:64:2296:-124.899,0,-7.98071	0/1:113:21,92:21:748:92:3285:-175.812,0,-10.7876	0/1:115:31,84:31:1090:84:3008:-171.185,0,-36.8792	0/1:156:54,102:54:1936:102:3664:-180.37,0,-55.1221	0/1:94:51,43:51:1820:43:1544:-72.9397,0,-74.0959	0/1:60:26,34:26:936:34:1205:-65.9914,0,-20.5545	0/1:136:101,35:101:3611:35:1256:-42.0858,0,-197.47	0/1:36:13,23:13:464:23:820:-40.9268,0,-19.2538	1/1:108:16,92:16:576:92:3308:-147.526,-3.10974,0	1/1:136:26,110:26:932:110:3948:-172.41,-1.84235,0	0/1:179:58,121:58:2080:121:4329:-200.624,0,-51.4458	0/1:201:40,161:40:1440:161:5761:-304.605,0,-34.9813	0/1:160:44,116:44:1580:116:4157:-242.936,0,-30.9671	0/1:133:34,99:34:1220:99:3543:-184.771,0,-13.1422	0/1:28:6,22:6:216:22:783:-42.6876,0,-0.776388	0/1:154:47,107:47:1679:107:3847:-209.493,0,-49.4899	0/1:108:21,87:21:756:87:3114:-167.824,0,-7.02656	0/1:317:42,275:42:1512:275:9857:-525.147,0,-3.08924	0/1:165:121,44:121:4304:44:1584:-52.0774,0,-163.27	0/1:124:60,63:60:2160:63:2264:-106.122,0,-95.4506	0/1:138:80,58:80:2872:58:2088:-88.8945,0,-131.616	0/1:280:152,128:152:5407:128:4585:-235.175,0,-249.792	0/1:43:23,20:23:824:20:720:-32.6202,0,-21.8208	0/1:144:79,65:79:2809:65:2332:-109.774,0,-98.7374	0/1:140:69,71:69:2476:71:2551:-131.298,0,-78.1903	0/1:66:44,22:44:1580:22:788:-32.2126,0,-52.397	0/1:180:93,87:93:3308:87:3093:-145.294,0,-103.398	0/1:136:58,78:58:2076:78:2789:-158.69,0,-61.5353	0/1:142:33,109:33:1172:109:3894:-206.327,0,-31.3765	0/1:305:162,143:162:5796:143:5115:-235.227,0,-271.027
chr04	383651	.	C	T	35535.5	PASS	AB=0.375571;ABP=1564.2;AC=84;AF=0.446809;AN=188;AO=4428;CIGAR=1X;DP=12099;DPB=12099;DPRA=12.9989;EPP=270.101;EPPR=16411.5;GTI=14;LEN=1;MEANALT=1.03226;MQM=21.9598;MQMR=26.5586;NS=94;NUMALT=1;ODDS=0.349982;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158117;QR=273526;RO=7668;RPL=4420;RPP=9548.93;RPPR=14970.2;RPR=8;RUN=1;SAF=2575;SAP=258.646;SAR=1853;SRF=7441;SRP=14740.5;SRR=227;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:100:74,26:74:2645:26:905:-20.0723,0,-141.196	0/1:108:60,48:60:2122:48:1693:-52.7728,0,-84.5785	0/1:247:149,98:149:5302:98:3501:-128.759,0,-214.689	0/1:200:145,55:145:5185:55:1957:-44.1302,0,-313.384	0/1:118:89,29:89:3185:29:1040:-25.9212,0,-182.478	0/1:54:33,21:33:1175:21:752:-17.0248,0,-61.7448	0/1:86:38,48:38:1364:48:1720:-58.1509,0,-76.9068	0/1:233:167,66:167:5965:66:2368:-42.8657,0,-253.916	0/1:141:104,37:104:3699:37:1317:-17.5488,0,-206.757	0/1:119:73,46:73:2616:46:1619:-62.333,0,-149.564	0/1:140:57,83:57:2044:83:2955:-106.923,0,-89.5557	0/1:212:86,126:86:3061:126:4521:-171.613,0,-145.341	0/1:142:65,77:65:2320:77:2768:-81.6071,0,-81.8198	0/1:147:58,89:58:2052:89:3174:-133.037,0,-78.5933	0/1:143:80,63:80:2865:63:2260:-73.4396,0,-136.807	0/1:135:70,65:70:2512:65:2336:-71.1701,0,-126.419	0/1:115:27,88:27:947:88:3121:-100.749,0,-16.7268	0/1:107:24,83:24:856:83:2980:-91.254,0,-13.8834	0/1:83:25,58:25:892:58:2087:-54.64,0,-30.6794	0/1:197:143,54:143:5132:54:1935:-47.524,0,-300.562	0/1:167:139,28:139:4984:28:1004:-1.40802,0,-285.28	0/1:93:77,16:77:2732:16:572:-12.2135,0,-158.854	0/1:103:82,21:82:2948:21:752:-18.152,0,-173.199	0/1:98:68,30:68:2444:30:1080:-31.3103,0,-118.453	0/1:94:72,22:72:2575:22:777:-9.94217,0,-145.379	0/1:259:194,65:194:6931:65:2309:-48.545,0,-392.506	0/1:246:195,51:195:6978:51:1824:-18.0187,0,-405.102	0/1:86:39,47:39:1372:47:1675:-68.2506,0,-61.8027	0/1:333:258,75:258:9196:75:2668:-32.549,0,-524.221	0/1:90:58,32:58:2068:32:1144:-33.3002,0,-102.824	0/1:118:80,38:80:2860:38:1355:-50.602,0,-146.697	0/0:10:10,0:10:360:0:0:0,-3.0103,-21.5991	0/0:26:22,4:22:788:4:144:0,-2.01897,-42.087	0/1:6:4,2:4:140:2:72:-0.943167,0,-6.24901	0/0:19:16,3:16:563:3:108:0,-1.52889,-26.4249	0/0:32:30,2:30:1072:2:61:0,-6.95313,-59.7694	0/1:370:184,186:184:6550:186:6654:-338.425,0,-334.05	0/0:92:81,11:81:2908:11:377:0,-5.94168,-166.267	0/1:134:38,96:38:1338:96:3425:-113.788,0,-44.0566	0/0:14:13,1:13:459:1:36:0,-2.81704,-28.0155	0/1:169:124,45:124:4423:45:1612:-38.0103,0,-212.629	0/1:67:27,40:27:968:40:1436:-50.23,0,-38.0044	0/1:233:183,50:183:6487:50:1772:-33.9271,0,-356.406	0/1:124:48,76:48:1715:76:2700:-128.011,0,-80.3614	0/1:132:55,77:55:1971:77:2740:-132.671,0,-86.7366	0/1:104:84,20:84:2975:20:698:-8.98843,0,-191.738	0/1:164:131,33:131:4687:33:1171:-12.001,0,-203.231	0/1:239:199,40:199:7096:40:1436:-5.96946,0,-381.213	0/1:94:70,24:70:2508:24:855:-18.3876,0,-146.218	0/1:150:116,34:116:4167:34:1224:-26.5494,0,-246.145	0/1:140:84,56:84:3020:56:2001:-96.9842,0,-185.074	0/0:36:33,3:33:1176:3:108:0,-5.825,-65.9637	0/1:117:80,37:80:2860:37:1315:-22.0897,0,-144.436	0/1:55:40,15:40:1417:15:540:-21.6856,0,-94.5322	0/1:7:2,5:2:72:5:176:-5.74997,0,-2.04078	0/1:170:133,37:133:4744:37:1315:-28.2645,0,-232.303	0/1:49:38,11:38:1347:11:392:-3.98967,0,-87.5032	0/1:15:13,2:13:459:2:72:-1.14798,0,-27.0068	0/1:26:20,6:20:705:6:216:-3.41427,0,-42.2551	0/1:88:64,24:64:2300:24:864:-23.8043,0,-130.195	0/1:199:88,110:88:3142:110:3933:-138.813,0,-141.01	0/0:18:17,1:17:590:1:36:0,-4.41952,-37.0329	0/1:119:89,30:89:3185:30:1049:-35.1355,0,-176.655	0/1:202:154,48:154:5475:48:1720:-28.5092,0,-285.146	0/1:80:65,15:65:2294:15:521:-5.70125,0,-125.385	0/1:111:90,21:90:3232:21:756:-11.505,0,-172.035	0/1:116:84,32:84:2981:32:1138:-39,0,-169.282	0/1:156:101,55:101:3600:55:1961:-56.193,0,-178.236	0/1:94:43,51:43:1544:51:1808:-73.8054,0,-72.8132	0/1:60:34,26:34:1224:26:936:-20.5545,0,-66.4749	0/1:135:32,103:32:1135:103:3682:-202.872,0,-35.8951	0/1:37:24,13:24:860:13:468:-19.0411,0,-42.6398	0/0:106:90,16:90:3203:16:576:0,-2.50768,-145.84	0/0:137:110,27:110:3885:27:972:0,-0.885007,-170.631	0/1:179:119,60:119:4244:60:2118:-54.4529,0,-195.715	0/1:202:161,40:161:5756:40:1427:-34.678,0,-305.565	0/1:158:115,43:115:4115:43:1540:-29.4401,0,-241.683	0/1:133:98,34:98:3473:34:1224:-12.0716,0,-180.565	0/1:27:21,6:21:747:6:216:-1.07742,0,-41.0875	0/1:158:109,49:109:3915:49:1754:-52.8295,0,-212.995	0/1:105:85,20:85:3047:20:720:-5.96431,0,-164.518	0/1:319:277,42:277:9883:42:1500:-2.908,0,-527.474	0/1:165:45,120:45:1607:120:4289:-161.179,0,-53.7177	0/1:125:64,61:64:2276:61:2175:-95.1847,0,-106.788	0/1:139:60,79:60:2140:79:2828:-128.822,0,-92.2744	0/1:278:129,149:129:4562:149:5325:-244.618,0,-234.728	0/1:41:19,22:19:680:22:788:-20.0806,0,-31.0782	0/1:143:65,78:65:2332:78:2783:-97.9255,0,-111.083	0/1:139:70,69:70:2474:69:2460:-79.6034,0,-126.856	0/1:67:24,43:24:864:43:1540:-49.8337,0,-37.0967	0/1:175:87,88:87:3097:88:3151:-94.5172,0,-150.284	0/1:136:78,58:78:2757:58:2080:-61.09,0,-156.499	0/1:138:107,31:107:3806:31:1108:-27.9496,0,-202.805	0/1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chr04	441281	.	G	A	35042.7	PASS	AB=0.561496;ABP=121.591;AC=44;AF=0.234043;AN=188;AO=2036;CIGAR=1X;DP=7115;DPB=7115;DPRA=1.27607;EPP=4372.17;EPPR=10749.2;GTI=3;LEN=1;MEANALT=1.02128;MQM=59.5756;MQMR=59.9464;NS=94;NUMALT=1;ODDS=0.669426;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72285;QR=181835;RO=5076;RPL=4;RPP=4389.45;RPPR=10757.8;RPR=2032;RUN=1;SAF=2034;SAP=4406.77;SAR=2;SRF=5075;SRP=11016.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:49:49,0:49:1723:0:0:0,-14.7505,-155.345	0/0:43:42,0:42:1504:0:0:0,-12.6433,-135.295	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:173:63,110:63:2251:110:3905:-299.449,0,-150.774	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:152:73,79:73:2602:79:2795:-205.539,0,-188.663	0/0:104:102,2:102:3644:2:72:0,-24.4704,-321.329	0/1:100:38,62:38:1364:62:2206:-168.645,0,-92.9577	0/0:72:72,0:72:2554:0:0:0,-21.6742,-230.099	0/1:76:44,32:44:1584:32:1131:-79.1864,0,-119.973	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/1:83:47,36:47:1679:36:1284:-90.8779,0,-126.411	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.701	0/1:86:45,41:45:1620:41:1458:-105.561,0,-120.201	0/1:74:37,37:37:1320:37:1300:-95.0232,0,-96.8257	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.843	0/1:44:22,22:22:792:22:780:-57.2777,0,-58.3604	0/1:130:62,68:62:2219:68:2424:-179.277,0,-160.838	0/1:111:46,65:46:1652:65:2292:-173.076,0,-115.554	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.733	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:38:32,6:32:1148:6:212:-7.98566,0,-92.1907	0/1:102:40,62:40:1431:62:2194:-166.996,0,-98.3818	0/1:154:82,72:82:2940:72:2569:-185.08,0,-218.475	0/1:191:99,92:99:3539:92:3253:-235.457,0,-261.222	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.273	0/1:179:62,117:62:2224:117:4150:-319.362,0,-146.54	0/0:72:71,1:71:2552:1:36:0,-18.0759,-226.327	0/0:74:72,2:72:2588:2:72:0,-15.4395,-226.332	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6021	0/0:227:227,0:227:8135:0:0:0,-68.3338,-732.056	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.337	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:150:65,85:65:2336:85:3032:-227.754,0,-165.345	0/1:56:25,31:25:900:31:1116:-83.894,0,-64.4633	0/0:106:106,0:106:3789:0:0:0,-31.9092,-341.206	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/0:79:79,0:79:2831:0:0:0,-23.7814,-255.027	0/1:122:61,61:61:2180:61:2164:-158.258,0,-159.74	0/0:73:72,0:72:2580:0:0:0,-21.6742,-232.089	0/1:117:47,70:47:1688:70:2479:-188.086,0,-116.986	0/1:101:51,50:51:1828:50:1780:-130.077,0,-134.397	0/1:109:42,67:42:1508:67:2387:-182.223,0,-103.202	0/0:146:146,0:146:5218:0:0:0,-43.9504,-469.752	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:118:42,76:42:1504:76:2685:-206.329,0,-100.133	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:95:95,0:95:3380:0:0:0,-28.5978,-304.413	0/1:27:11,16:11:392:16:564:-42.9601,0,-27.4899	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3626	0/1:13:2,11:2:72:11:396:-32.0684,0,-2.92333	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/1:95:48,47:48:1728:47:1663:-121.354,0,-127.207	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.32911	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.732	0/1:129:59,70:59:2120:70:2500:-186.412,0,-152.236	0/1:69:27,42:27:968:42:1500:-114.514,0,-66.6663	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.039	0/0:93:93,0:93:3319:0:0:0,-27.9958,-298.919	0/1:106:26,79:26:932:79:2813:-221.349,0,-52.2309	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.3	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.537	0/1:26:11,15:11:396:15:524:-39.6615,0,-28.156	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:70:21,49:21:756:49:1731:-134.994,0,-47.2951	0/1:137:43,94:43:1540:94:3341:-259.512,0,-97.652	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.861	0/1:84:28,56:28:1008:56:1984:-153.465,0,-65.7498	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.333	0/1:58:34,24:34:1215:24:856:-59.8981,0,-91.568	0/0:91:91,0:91:3249:0:0:0,-27.3937,-292.312	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:128:125,3:125:4484:3:108:0,-28.4567,-393.653	0/1:20:7,13:7:252:13:464:-36.0769,0,-17.0084	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:59:33,26:33:1184:26:922:-65.5315,0,-89.1075	0/1:89:43,46:43:1548:46:1629:-120.101,0,-112.821	0/1:110:39,71:39:1396:71:2506:-192.671,0,-92.8258	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703
chr04	463476	.	G	A	72264.1	PASS	AB=0.516672;ABP=17.6364;AC=41;AF=0.22043;AN=186;AO=3156;CIGAR=1X;DP=13350;DPB=13350;DPRA=1.18563;EPP=6821.48;EPPR=22073.9;GTI=1;LEN=1;MEANALT=1.03922;MQM=59.935;MQMR=59.989;NS=93;NUMALT=1;ODDS=1.82805;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112588;QR=361416;RO=10188;RPL=1474;RPP=32.7779;RPPR=386.868;RPR=1682;RUN=1;SAF=1472;SAP=33.9338;SAR=1684;SRF=4421;SRP=389.16;SRR=5767;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:81:81,0:81:2857:0:0:0,-24.3834,-257.366	0/0:208:208,0:208:7372:0:0:0,-62.6142,-663.532	0/0:299:297,2:297:10616:2:72:0,-83.1712,-948.5	0/1:306:160,146:160:5660:146:5193:-375.357,0,-417.405	0/0:81:81,0:81:2882:0:0:0,-24.3834,-259.616	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.874	0/1:146:79,67:79:2811:67:2406:-172.652,0,-209.28	0/0:221:221,0:221:7866:0:0:0,-66.5276,-707.962	0/1:164:73,91:73:2592:91:3240:-242.452,0,-184.158	0/0:121:121,0:121:4305:0:0:0,-36.4246,-387.628	0/1:101:48,53:48:1697:53:1891:-140.064,0,-122.61	0/0:155:155,0:155:5416:0:0:0,-46.6596,-487.576	0/1:137:62,74:62:2186:74:2638:-196.366,0,-155.706	0/0:129:129,0:129:4571:0:0:0,-38.8329,-411.557	0/1:110:61,49:61:2164:49:1752:-124.85,0,-161.911	0/1:106:64,42:64:2268:42:1508:-104.105,0,-172.471	0/0:115:115,0:115:4041:0:0:0,-34.6184,-363.878	0/0:79:79,0:79:2787:0:0:0,-23.7814,-251.07	0/1:57:33,24:33:1176:24:856:-60.2024,0,-88.9891	0/1:300:167,133:167:5956:133:4763:-338.517,0,-445.839	0/1:188:82,106:82:2872:106:3795:-285.154,0,-202.125	0/0:123:123,0:123:4342:0:0:0,-37.0267,-390.958	0/0:120:120,0:120:4254:0:0:0,-36.1236,-383.039	0/0:157:150,7:150:5308:7:248:0,-24.5975,-455.193	0/1:108:44,62:44:1576:62:2208:-166.716,0,-109.863	0/1:400:196,204:196:6977:204:7278:-534.659,0,-507.393	0/1:418:194,224:194:6867:224:7963:-590.733,0,-492.273	0/0:57:57,0:57:2026:0:0:0,-17.1587,-182.611	0/1:355:167,188:167:5965:188:6664:-492.813,0,-430.091	0/0:183:173,10:173:6134:10:360:0,-22.3442,-519.416	0/0:196:196,0:196:6953:0:0:0,-59.0019,-625.839	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:13:4,9:4:144:9:309:-24.2273,0,-9.40023	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:27:15,12:15:540:12:428:-30.731,0,-40.8087	0/0:291:291,0:291:10326:0:0:0,-87.5997,-929.268	0/0:176:175,1:175:6217:1:36:0,-49.383,-556.032	0/0:101:101,0:101:3560:0:0:0,-30.404,-320.607	.:.:.:.:.:.:.:.	0/1:276:140,136:140:4990:136:4879:-356.177,0,-366.165	0/1:49:26,23:26:923:23:828:-60.0936,0,-68.6363	0/0:194:194,0:194:6940:0:0:0,-58.3998,-624.659	0/0:100:99,1:99:3518:1:36:0,-26.5047,-313.232	0/0:91:91,0:91:3175:0:0:0,-27.3937,-285.977	0/1:130:60,70:60:2136:70:2492:-185.397,0,-153.374	0/0:182:182,0:182:6420:0:0:0,-54.7875,-577.89	0/1:220:97,123:97:3447:123:4416:-331.383,0,-244.218	0/1:153:77,76:77:2719:76:2728:-199.703,0,-198.895	0/1:269:138,131:138:4902:131:4657:-338.188,0,-360.355	0/0:159:159,0:159:5670:0:0:0,-47.8638,-510.418	0/1:10:2,8:2:68:8:279:-22.4372,0,-3.44741	0/1:190:98,92:98:3479:92:3283:-238.449,0,-256.128	0/0:61:61,0:61:2170:0:0:0,-18.3628,-195.565	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:218:218,0:218:7750:0:0:0,-65.6245,-697.536	0/1:59:30,29:30:1071:29:1040:-76.1536,0,-78.9408	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:27:9,18:9:324:18:644:-50.1628,0,-21.378	0/0:121:121,0:121:4270:0:0:0,-36.4246,-384.478	0/1:173:85,88:85:3008:88:3164:-232.905,0,-218.873	0/1:6:4,2:4:144:2:63:-4.17697,0,-11.5074	0/0:283:283,0:283:10074:0:0:0,-85.1915,-906.568	0/1:213:100,113:100:3520:113:4044:-300.023,0,-252.893	0/1:112:62,50:62:2204:50:1773:-126.136,0,-164.91	0/0:123:123,0:123:4404:0:0:0,-37.0267,-396.53	0/0:205:204,1:204:7226:1:36:0,-58.1129,-646.764	0/1:138:45,93:45:1604:93:3308:-256.205,0,-103.108	0/0:71:71,0:71:2512:0:0:0,-21.3731,-226.331	0/0:120:120,0:120:4271:0:0:0,-36.1236,-384.567	0/0:132:132,0:132:4674:0:0:0,-39.736,-420.823	0/1:23:7,16:7:244:16:576:-45.2513,0,-15.3757	0/0:155:154,1:154:5469:1:36:0,-43.0614,-488.74	0/1:130:51,79:51:1820:79:2819:-214.816,0,-124.947	0/1:237:104,133:104:3652:133:4728:-354.331,0,-257.541	0/0:201:201,0:201:7108:0:0:0,-60.507,-639.786	0/0:170:170,0:170:6023:0:0:0,-51.1751,-542.182	0/1:192:91,101:91:3219:101:3607:-267.035,0,-232.134	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:209:208,1:208:7409:1:32:0,-59.716,-663.648	0/0:217:217,0:217:7726:0:0:0,-65.3235,-695.375	0/0:255:252,0:252:8891:0:0:0,-75.8596,-799.822	0/1:127:67,60:67:2379:60:2147:-155.266,0,-176.137	0/0:105:104,1:104:3665:1:36:0,-28.0099,-326.456	0/0:109:109,0:109:3874:0:0:0,-32.8123,-348.856	0/0:231:230,1:230:8136:1:36:0,-65.9397,-728.664	0/1:44:23,21:23:815:21:756:-55.1219,0,-60.4254	0/0:121:121,0:121:4313:0:0:0,-36.4246,-388.346	0/0:118:118,0:118:4160:0:0:0,-35.5215,-374.587	0/1:66:32,34:32:1104:34:1216:-89.8786,0,-79.7957	0/1:159:80,79:80:2824:79:2811:-205.366,0,-206.535	0/1:113:47,66:47:1679:66:2330:-175.942,0,-117.38	0/0:162:162,0:162:5780:0:0:0,-48.7669,-520.315	0/0:166:166,0:166:5914:0:0:0,-49.971,-532.314
chr04	553012	.	C	T	122955	PASS	AB=0.502905;ABP=3.26265;AC=145;AF=0.77957;AN=186;AO=5839;CIGAR=1X;DP=7567;DPB=7567;DPRA=0;EPP=12682.2;EPPR=3750.97;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.8608;MQMR=59.9548;NS=93;NUMALT=1;ODDS=3.67976;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207665;QR=61379;RO=1726;RPL=0;RPP=12682.2;RPPR=3750.97;RPR=5839;RUN=1;SAF=5839;SAP=12682.2;SAR=0;SRF=1726;SRP=3750.97;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51:0:0:51:1809:-163.065,-15.3525,0	1/1:61:0,61:0:0:61:2154:-194.121,-18.3628,0	1/1:118:0,118:0:0:118:4168:-375.3,-35.5215,0	0/1:197:118,79:118:4197:79:2816:-194.364,0,-318.609	1/1:60:0,59:0:0:59:2101:-189.138,-17.7608,0	1/1:55:0,55:0:0:55:1964:-177.016,-16.5567,0	0/1:153:63,90:63:2260:90:3224:-244.323,0,-157.598	1/1:131:2,129:2:72:129:4555:-403.276,-32.5982,0	0/1:93:52,41:52:1844:41:1460:-103.683,0,-138.244	1/1:144:0,144:0:0:144:5097:-458.097,-43.3483,0	0/1:64:25,39:25:892:39:1368:-104.15,0,-61.3338	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:60:30,30:30:1059:30:1080:-79.4505,0,-77.5586	1/1:75:0,75:0:0:75:2674:-240.04,-22.5773,0	0/1:52:30,22:30:1068:22:784:-55.2304,0,-80.7785	0/1:55:25,30:25:888:30:1064:-79.515,0,-63.6824	1/1:63:0,63:0:0:63:2235:-201.406,-18.9649,0	1/1:47:0,47:0:0:47:1675:-151.025,-14.1484,0	0/1:49:36,13:36:1280:13:464:-27.347,0,-100.753	0/1:138:62,76:62:2216:76:2723:-203.771,0,-158.163	0/1:77:45,32:45:1600:32:1125:-78.3767,0,-121.111	1/1:140:1,139:1:36:139:4915:-438.898,-38.5459,0	1/1:95:0,95:0:0:95:3381:-304.505,-28.5979,0	1/1:104:5,99:5:180:99:3495:-298.203,-14.7551,0	0/1:58:17,41:17:608:41:1453:-113.604,0,-37.5923	0/1:329:181,148:181:6402:148:5260:-374.484,0,-477.234	0/1:147:71,76:71:2532:76:2686:-197.729,0,-183.871	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:242:95,147:95:3366:147:5260:-400.479,0,-230.3	1/1:68:3,65:3:108:65:2314:-198.441,-10.3949,0	1/1:135:0,135:0:0:135:4831:-434.935,-40.6391,0	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:23:12,11:12:428:11:392:-28.6964,0,-31.9351	1/1:117:0,117:0:0:117:4177:-376.098,-35.2205,0	1/1:137:0,137:0:0:137:4820:-433.948,-41.2411,0	1/1:63:1,62:1:36:62:2232:-197.537,-15.3666,0	.:.:.:.:.:.:.:.	0/1:115:42,73:42:1492:73:2581:-197.919,0,-99.9561	0/1:43:24,19:24:843:19:684:-48.946,0,-63.2437	1/1:106:0,106:0:0:106:3781:-340.109,-31.9092,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:38:0,38:0:0:38:1348:-121.62,-11.4391,0	0/1:73:44,29:44:1555:29:1016:-69.7652,0,-118.261	1/1:70:0,70:0:0:70:2496:-224.893,-21.0721,0	0/1:112:50,62:50:1792:62:2205:-164.366,0,-127.847	0/1:78:37,41:37:1316:41:1448:-107.136,0,-95.2615	0/1:98:32,66:32:1144:66:2340:-181.359,0,-73.7686	1/1:193:0,193:0:0:193:6908:-621.787,-58.0988,0	0/1:11:5,6:5:180:6:216:-16.4768,0,-13.2407	0/1:73:33,40:33:1172:40:1440:-107.914,0,-83.8123	1/1:74:0,74:0:0:74:2621:-236.128,-22.2762,0	1/1:27:0,27:0:0:27:941:-85.0017,-8.12781,0	1/1:88:0,88:0:0:88:3122:-281.201,-26.4906,0	0/1:43:16,27:16:572:27:923:-70.4294,0,-38.8691	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:14:7,7:7:252:7:248:-18.4489,0,-18.8145	1/1:66:0,66:0:0:66:2354:-212.116,-19.868,0	0/1:110:62,48:62:2220:48:1720:-121.972,0,-166.951	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:158:0,158:0:0:158:5587:-502.924,-47.5627,0	0/1:126:60,66:60:2136:66:2333:-172.298,0,-154.579	0/1:93:46,46:46:1632:46:1652:-120.953,0,-119.153	1/1:65:0,65:0:0:65:2316:-208.663,-19.567,0	1/1:134:0,134:0:0:134:4760:-428.515,-40.338,0	0/1:28:20,8:20:708:8:280:-17.1105,0,-55.6168	1/1:22:1,21:1:36:21:744:-63.6861,-3.02439,0	1/1:55:0,55:0:0:55:1957:-176.404,-16.5567,0	1/1:69:0,69:0:0:69:2452:-220.936,-20.7711,0	0/1:18:5,13:5:176:13:464:-36.6743,0,-10.7665	1/1:98:0,98:0:0:98:3439:-309.689,-29.5009,0	0/1:36:21,15:21:744:15:540:-38.0857,0,-56.2183	0/1:157:81,76:81:2892:76:2704:-196.343,0,-213.237	1/1:128:0,128:0:0:128:4584:-412.722,-38.5318,0	1/1:82:0,82:0:0:82:2910:-262.133,-24.6845,0	0/1:99:40,59:40:1417:59:2108:-158.903,0,-98.0234	1/1:13:0,13:0:0:13:454:-41.1919,-3.91339,0	1/1:95:0,95:0:0:95:3388:-305.136,-28.5979,0	1/1:78:0,78:0:0:78:2765:-249.004,-23.4803,0	1/1:157:0,157:0:0:157:5611:-505.11,-47.2617,0	0/1:91:55,36:55:1955:36:1288:-88.8299,0,-148.831	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:104:0,104:0:0:104:3728:-335.721,-31.3071,0	0/1:29:17,12:17:604:12:428:-30.1289,0,-45.9607	1/1:61:0,61:0:0:61:2180:-195.976,-18.3628,0	1/1:64:0,64:0:0:64:2279:-205.34,-19.2659,0	0/1:62:34,28:34:1208:28:992:-70.9305,0,-90.3622	0/1:132:72,60:72:2561:60:2132:-152.41,0,-191.003	0/1:35:29,6:29:1028:6:216:-9.25446,0,-82.297	1/1:83:0,83:0:0:83:2942:-265.012,-24.9855,0	1/1:78:3,75:3:108:75:2680:-231.37,-13.4052,0
chr04	553192	.	T	C	30636.1	PASS	AB=0.58899;ABP=206.685;AC=42;AF=0.223404;AN=188;AO=1765;CIGAR=1X;DP=6186;DPB=6186;DPRA=1.17421;EPP=3835.66;EPPR=9600.92;GTI=4;LEN=1;MEANALT=1.01923;MQM=59.9711;MQMR=59.9914;NS=94;NUMALT=1;ODDS=1.87146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62981;QR=153796;RO=4420;RPL=1765;RPP=3835.66;RPPR=9600.92;RPR=0;RUN=1;SAF=0;SAP=3835.66;SAR=1765;SRF=0;SRP=9600.92;SRR=4420;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/0:107:107,0:107:3715:0:0:0,-32.2102,-334.549	0/0:78:78,0:78:2702:0:0:0,-23.4803,-243.418	0/1:131:60,71:60:2130:71:2548:-190.131,0,-152.53	0/0:30:30,0:30:1050:0:0:0,-9.0309,-94.8063	0/0:19:18,1:18:614:1:36:0,-2.12129,-51.9787	0/1:101:41,60:41:1457:60:2137:-162.192,0,-101.02	0/0:136:136,0:136:4684:0:0:0,-40.9401,-421.719	0/1:18:5,13:5:176:13:460:-36.3168,0,-10.7665	0/0:51:50,1:50:1754:1:36:0,-11.7543,-154.541	0/1:58:13,45:13:464:45:1611:-127.82,0,-24.6378	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:72:27,45:27:945:45:1605:-123.064,0,-63.6881	0/0:74:74,0:74:2585:0:0:0,-22.2762,-232.893	0/1:56:18,38:18:625:38:1368:-106.563,0,-39.7148	0/1:55:17,38:17:578:38:1349:-105.152,0,-35.7808	0/0:53:53,0:53:1844:0:0:0,-15.9546,-166.232	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/1:49:19,30:19:654:30:1080:-82.7628,0,-44.4271	0/1:85:46,39:46:1573:39:1404:-101.072,0,-116.262	0/1:80:26,54:26:879:54:1916:-148.633,0,-55.3325	0/0:69:68,1:68:2387:1:36:0,-17.1728,-211.485	0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4168	0/0:45:41,4:41:1404:4:144:0,-0.232732,-113.334	0/1:45:11,34:11:381:34:1205:-95.206,0,-21.0743	0/1:211:90,121:90:3096:121:4324:-325.819,0,-215.344	0/1:153:62,91:62:2096:91:3220:-243.471,0,-142.84	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:195:84,111:84:2986:111:3946:-296.63,0,-210.269	0/0:108:106,2:106:3630:2:72:0,-25.6745,-320.062	0/0:62:62,0:62:2183:0:0:0,-18.6639,-196.731	0/1:14:7,7:7:222:7:248:-18.4498,0,-16.0747	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:116:116,0:116:4096:0:0:0,-34.9195,-368.824	0/0:121:121,0:121:4227:0:0:0,-36.4246,-380.585	0/0:62:62,0:62:2138:0:0:0,-18.6639,-192.678	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:86:43,43:43:1458:43:1533:-112.373,0,-105.613	0/1:28:8,20:8:284:20:720:-56.6999,0,-17.4745	0/0:67:65,2:65:2238:2:72:0,-13.3323,-194.838	0/0:60:60,0:60:2077:0:0:0,-18.0618,-187.192	0/0:39:39,0:39:1324:0:0:0,-11.7402,-119.449	0/1:55:22,33:22:754:33:1158:-87.9659,0,-51.6166	0/0:79:78,1:78:2691:1:36:0,-20.1831,-238.829	0/1:141:63,78:63:2203:78:2789:-208.79,0,-156.086	0/1:101:31,70:31:1112:70:2516:-196.287,0,-69.9873	0/1:88:39,49:39:1385:49:1745:-130.842,0,-98.4562	0/0:152:152,0:152:5287:0:0:0,-45.7566,-475.963	0/1:12:7,5:7:237:5:180:-12.9397,0,-18.0467	0/1:75:32,42:32:1088:42:1504:-113.165,0,-75.727	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:19:19,0:19:601:0:0:0,-5.71957,-54.3861	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.539	0/1:23:8,15:8:288:15:536:-41.6511,0,-19.3437	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:21:8,13:8:258:13:468:-36.138,0,-17.2113	0/0:33:33,0:33:1154:0:0:0,-9.93399,-104.162	0/1:106:47,59:47:1684:59:2090:-156.457,0,-119.938	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:133:133,0:133:4624:0:0:0,-40.037,-416.321	0/1:121:57,64:57:2010:64:2292:-170.117,0,-144.745	0/1:64:31,33:31:1112:33:1173:-86.6096,0,-81.1254	0/0:58:58,0:58:2039:0:0:0,-17.4597,-183.777	0/0:111:109,2:109:3721:2:72:0,-26.5776,-328.247	0/1:87:27,60:27:930:60:2152:-167.758,0,-57.8186	0/0:25:25,0:25:847:0:0:0,-7.52575,-76.5362	0/0:73:73,0:73:2496:0:0:0,-21.9752,-224.883	0/0:75:75,0:75:2619:0:0:0,-22.5772,-235.953	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:79:79,0:79:2776:0:0:0,-23.7814,-250.076	0/1:68:29,39:29:1014:39:1385:-104.477,0,-71.0974	0/1:73:32,41:32:1099:41:1414:-105.574,0,-77.2348	0/0:109:109,0:109:3777:0:0:0,-32.8123,-340.123	0/0:80:80,0:80:2737:0:0:0,-24.0824,-246.563	0/1:86:40,46:40:1383:46:1641:-122.088,0,-98.8722	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:65:65,0:65:2272:0:0:0,-19.5669,-204.736	0/0:59:59,0:59:2064:0:0:0,-17.7608,-186.024	0/0:119:119,0:119:4159:0:0:0,-35.8226,-374.49	0/1:78:32,46:32:1129:46:1652:-125.488,0,-78.436	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:102:96,6:96:3372:6:216:0,-10.9145,-283.903	0/1:27:16,11:16:572:11:396:-27.8549,0,-43.6856	0/0:53:52,1:52:1837:1:36:0,-12.3563,-162.002	0/0:44:44,0:44:1501:0:0:0,-13.2453,-135.372	0/1:72:27,45:27:923:45:1608:-123.335,0,-61.7011	0/1:112:46,66:46:1577:66:2376:-180.382,0,-108.494	0/1:81:35,46:35:1151:46:1648:-124.225,0,-79.4924	0/0:54:54,0:54:1842:0:0:0,-16.2556,-166.048	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332
chr04	758547	.	G	A	28641.5	PASS	AB=0.550083;ABP=68.4804;AC=40;AF=0.215054;AN=186;AO=1658;CIGAR=1X;DP=6318;DPB=6318;DPRA=1.19111;EPP=3603.31;EPPR=10122.1;GTI=3;LEN=1;MEANALT=1;MQM=59.9324;MQMR=59.9792;NS=93;NUMALT=1;ODDS=0.0759266;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59337;QR=166646;RO=4660;RPL=0;RPP=3603.31;RPPR=10122.1;RPR=1658;RUN=1;SAF=1658;SAP=3603.31;SAR=0;SRF=4660;SRP=10122.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.461	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:180:180,0:180:6434:0:0:0,-54.1854,-579.145	0/1:246:97,149:97:3434:149:5341:-406.767,0,-235.219	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:72:39,33:39:1396:33:1176:-84.4736,0,-104.265	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:86:31,55:31:1097:55:1972:-151.866,0,-73.1494	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.035	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/1:67:41,26:41:1476:26:936:-64.3905,0,-112.967	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:58:25,33:25:900:33:1188:-89.7689,0,-63.8613	0/1:45:19,26:19:684:26:936:-71.0131,0,-48.344	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:30:20,10:20:720:10:360:-23.7134,0,-56.0979	0/1:82:24,58:24:860:58:2069:-161.708,0,-53.0374	0/1:130:51,79:51:1791:79:2832:-215.985,0,-122.332	0/0:74:74,0:74:2633:0:0:0,-22.2762,-237.216	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:42:39,3:39:1396:3:108:0,-2.57285,-115.869	0/1:82:37,45:37:1332:45:1616:-121.046,0,-95.4979	0/1:190:78,112:78:2792:112:4018:-304.525,0,-194.325	0/1:144:78,66:78:2785:66:2376:-170.749,0,-207.541	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:179:72,107:72:2576:107:3817:-289.842,0,-178.205	0/0:78:77,1:77:2772:1:36:0,-19.8821,-246.122	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:208:208,0:208:7488:0:0:0,-62.6142,-673.957	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.948	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:84:41,43:41:1468:43:1548:-114.197,0,-107.13	0/1:36:19,17:19:684:17:612:-44.5764,0,-51.0532	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:109:48,61:48:1716:61:2194:-164.904,0,-121.857	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:157:72,85:72:2577:85:3052:-227.647,0,-184.916	0/1:87:54,33:54:1940:33:1164:-78.8719,0,-148.687	0/1:61:21,40:21:748:40:1413:-109.102,0,-49.2825	0/0:142:142,0:142:5077:0:0:0,-42.7463,-457.073	.:.:.:.:.:.:.:.	0/1:81:54,27:54:1940:27:972:-63.4145,0,-150.493	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.031	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/1:41:21,20:21:756:20:720:-52.7865,0,-56.025	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/1:103:47,56:47:1688:56:1989:-148.274,0,-121.201	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:167:167,0:167:5992:0:0:0,-50.272,-539.383	0/1:108:37,71:37:1320:71:2545:-196.789,0,-86.5898	0/1:25:17,8:17:608:8:284:-18.3776,0,-47.5263	0/0:73:73,0:73:2605:0:0:0,-21.9752,-234.697	0/1:104:42,62:42:1455:62:2198:-166.774,0,-99.9303	0/1:82:23,59:23:798:59:2090:-163.682,0,-47.4496	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/1:10:9,1:9:316:1:36:-0.587975,0,-25.7686	0/0:118:118,0:118:4213:0:0:0,-35.5215,-379.35	0/1:75:38,37:38:1349:37:1324:-96.8848,0,-99.131	0/1:75:38,37:38:1349:37:1322:-96.6988,0,-99.131	0/0:134:134,0:134:4793:0:0:0,-40.338,-431.525	0/0:75:75,0:75:2665:0:0:0,-22.5772,-240.095	0/1:75:36,39:36:1292:39:1396:-103.362,0,-94.0065	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:72:71,1:71:2552:1:36:0,-18.0759,-226.332	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:159:159,0:159:5678:0:0:0,-47.8638,-510.424	0/1:58:31,27:31:1112:27:972:-70.3382,0,-82.9316	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/0:112:112,0:112:3990:0:0:0,-33.7154,-359.287	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2693	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:50:18,32:18:648:32:1148:-88.5783,0,-43.6004	0/1:76:26,50:26:919:50:1781:-137.693,0,-60.1479	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951
chr04	763001	.	G	A	150439	PASS	AB=0.506468;ABP=4.69579;AC=145;AF=0.771277;AN=188;AO=7263;CIGAR=1X;DP=9567;DPB=9567;DPRA=34.2796;EPP=15420.3;EPPR=4945.42;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9836;MQMR=59.9926;NS=94;NUMALT=1;ODDS=0.0298203;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253853;QR=82164;RO=2300;RPL=32;RPP=15497.7;RPPR=4945.42;RPR=7231;RUN=1;SAF=7254;SAP=15696.3;SAR=9;SRF=2300;SRP=4997.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1329:-119.908,-11.4391,0	1/1:67:0,67:0:0:67:2304:-207.617,-20.169,0	1/1:170:0,170:0:0:170:5815:-523.471,-51.1751,0	0/1:232:107,125:107:3828:125:4408:-327.053,0,-274.878	1/1:15:0,15:0:0:15:502:-45.497,-4.51545,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:102:58,44:58:2063:44:1443:-99.4434,0,-155.236	1/1:114:1,113:1:32:113:3994:-356.452,-31.1181,0	0/1:69:36,33:36:1292:33:1176:-85.3767,0,-95.8127	1/1:61:0,61:0:0:61:2104:-189.624,-18.3628,0	0/1:102:43,59:43:1544:59:2089:-157.573,0,-108.548	1/1:177:0,176:0:0:176:6203:-558.015,-52.9813,0	0/1:120:60,60:60:2139:60:2126:-155.484,0,-156.654	1/1:63:0,63:0:0:63:2241:-201.952,-18.9649,0	0/1:122:62,60:62:2219:60:2125:-154.791,0,-163.248	0/1:102:58,44:58:2084:44:1518:-106.205,0,-157.125	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:57:29,28:29:1032:28:977:-71.0813,0,-76.0348	0/1:540:259,281:259:9277:281:9320:-676.247,0,-672.339	0/1:143:61,81:61:2188:81:2843:-213.148,0,-154.227	1/1:150:0,150:0:0:150:5042:-453.929,-45.1545,0	1/1:110:0,110:0:0:110:3874:-348.857,-33.1133,0	1/1:49:1,48:1:36:48:1682:-148.064,-11.1522,0	0/1:104:40,64:40:1428:64:2223:-169.024,0,-97.5104	0/1:204:107,97:107:3808:97:3366:-241.744,0,-281.507	0/1:348:145,203:145:5196:203:6983:-523.683,0,-363.02	1/1:54:0,54:0:0:54:1894:-170.734,-16.2556,0	0/1:297:165,132:165:5909:132:4598:-324.581,0,-442.511	1/1:76:1,75:1:36:75:2617:-232.178,-19.28,0	1/1:126:0,126:0:0:126:4463:-401.843,-37.9298,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/1:19:6,13:6:212:13:464:-36.3779,0,-13.7052	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	1/1:334:1,333:1:36:333:11639:-1043.81,-96.9457,0	1/1:53:1,52:1:36:52:1782:-157.056,-12.3563,0	1/1:75:1,74:1:36:74:2622:-232.628,-18.979,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:102:60,42:60:2120:42:1447:-99.8133,0,-160.362	0/1:47:24,23:24:864:23:816:-59.6133,0,-63.9342	1/1:143:0,143:0:0:143:4997:-449.88,-43.0473,0	1/1:114:0,114:0:0:114:4022:-362.168,-34.3174,0	1/1:76:0,76:0:0:76:2677:-241.172,-22.8783,0	0/1:73:33,40:33:1180:40:1384:-102.878,0,-84.5329	1/1:117:0,117:0:0:117:4100:-369.187,-35.2205,0	0/1:130:66,64:66:2352:64:2254:-163.988,0,-172.805	0/1:78:42,36:42:1481:36:1260:-90.2193,0,-110.102	0/1:134:55,79:55:1972:79:2770:-209.203,0,-137.417	1/1:65:0,65:0:0:65:2241:-201.947,-19.567,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:109:43,65:43:1544:65:2228:-167.906,0,-106.382	1/1:91:1,90:1:36:90:3197:-284.355,-23.7955,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:153:0,153:0:0:153:5357:-482.14,-46.0576,0	0/1:37:29,8:29:1040:8:288:-15.1293,0,-82.7763	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:54:0,54:0:0:54:1909:-172.085,-16.2556,0	0/1:127:58,69:58:2057:69:2456:-183.064,0,-147.169	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:141:1,140:1:36:140:4944:-441.512,-38.847,0	0/1:138:59,79:59:2112:79:2774:-208.359,0,-148.807	0/1:18:11,7:11:396:7:244:-16.8809,0,-30.5642	1/1:90:0,90:0:0:90:3165:-285.075,-27.0927,0	0/1:192:103,89:103:3667:89:3134:-224.488,0,-272.367	0/1:142:86,56:86:3079:56:1974:-135.185,0,-234.591	1/1:94:0,94:0:0:94:3352:-301.898,-28.2968,0	1/1:60:0,60:0:0:60:2098:-189.087,-18.0618,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	0/1:15:4,11:4:135:11:388:-30.7419,0,-7.96706	1/1:132:0,132:0:0:132:4554:-410.032,-39.736,0	0/1:56:25,31:25:888:31:1100:-82.4526,0,-63.3813	0/1:131:68,63:68:2432:63:2215:-160.175,0,-179.701	1/1:126:0,126:0:0:126:4385:-394.829,-37.9298,0	1/1:71:0,71:0:0:71:2508:-225.97,-21.3731,0	0/1:94:45,49:45:1608:49:1722:-126.964,0,-116.713	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	1/1:86:0,86:0:0:86:3001:-270.318,-25.8886,0	1/1:290:0,290:0:0:290:10074:-906.615,-87.2987,0	1/1:199:0,199:0:0:199:6952:-625.753,-59.905,0	0/1:57:25,32:25:896:32:1125:-84.3973,0,-63.8016	1/1:108:0,108:0:0:108:3771:-339.593,-32.5112,0	1/1:55:0,55:0:0:55:1945:-175.193,-16.5567,0	1/1:173:2,171:2:72:171:6042:-537.054,-45.2415,0	0/1:28:12,16:12:432:16:568:-43.023,0,-30.7924	1/1:128:0,128:0:0:128:4501:-405.262,-38.5318,0	1/1:102:0,102:0:0:102:3621:-326.097,-30.7051,0	0/1:85:45,40:45:1600:40:1415:-102.059,0,-118.703	0/1:120:57,63:57:2023:63:2237:-165.469,0,-146.219	0/1:128:85,43:85:3027:43:1520:-98.5613,0,-234.129	1/1:162:0,161:0:0:161:5706:-513.451,-48.4658,0	1/1:144:0,144:0:0:144:5108:-459.807,-43.3483,0
chr04	763863	.	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chr04	867379	.	G	C	39356.5	PASS	AB=0.529514;ABP=37.7468;AC=43;AF=0.228723;AN=188;AO=2459;CIGAR=1X;DP=9756;DPB=9756;DPRA=1.05208;EPP=5307.97;EPPR=15772.3;GTI=1;LEN=1;MEANALT=1.07692;MQM=41.1497;MQMR=54.5819;NS=94;NUMALT=1;ODDS=0.0596196;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88045;QR=260916;RO=7290;RPL=2455;RPP=5307.97;RPPR=15772.3;RPR=4;RUN=1;SAF=2459;SAP=5342.66;SAR=0;SRF=7290;SRP=15833;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.0405	0/0:131:130,0:130:4652:0:0:0,-39.1339,-414.397	0/0:123:123,0:123:4405:0:0:0,-37.0267,-396.071	0/1:258:117,141:117:4189:141:5039:-360.98,0,-298.922	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.519	0/0:39:39,0:39:1381:0:0:0,-11.7402,-124.277	0/1:152:64,88:64:2304:88:3160:-226.411,0,-161.581	0/0:186:186,0:186:6642:0:0:0,-55.9916,-596.496	0/1:119:65,54:65:2328:54:1940:-133.22,0,-171.097	0/0:128:128,0:128:4570:0:0:0,-38.5318,-411.091	0/1:87:42,45:42:1508:45:1607:-114.213,0,-109.511	0/0:95:95,0:95:3407:0:0:0,-28.5978,-306.369	0/1:94:50,44:50:1783:44:1566:-107.957,0,-132.253	0/0:86:86,0:86:3074:0:0:0,-25.8886,-276.188	0/1:89:42,47:42:1503:47:1677:-119.963,0,-108.656	0/1:70:30,40:30:1076:40:1436:-102.042,0,-75.9804	0/0:77:77,0:77:2768:0:0:0,-23.1793,-248.868	0/0:85:84,1:84:2995:1:36:0,-22.0665,-265.751	0/1:43:25,18:25:900:18:648:-43.7067,0,-68.2073	0/1:107:56,51:56:2012:51:1832:-126.266,0,-148.249	0/1:151:76,74:76:2732:74:2645:-185.067,0,-200.192	0/0:108:107,1:107:3823:1:36:0,-29.0567,-339.304	0/0:123:122,1:122:4376:1:36:0,-33.546,-389.551	0/0:125:114,11:114:4085:11:396:0,-2.90643,-331.739	0/1:54:29,25:29:1040:25:896:-62.1078,0,-77.554	0/1:325:161,164:161:5773:164:5859:-407.923,0,-416.522	0/1:169:81,88:81:2900:88:3168:-224.938,0,-209.312	0/0:48:48,0:48:1709:0:0:0,-14.4494,-153.882	0/1:205:90,115:90:3224:115:4097:-291.6,0,-228.059	0/0:133:126,7:126:4512:7:248:0,-18.1493,-383.226	0/0:189:189,0:189:6755:0:0:0,-56.8947,-607.106	0/1:4:2,2:2:63:2:68:-5.09365,0,-4.77551	0/1:8:5,3:5:180:3:108:-7.33771,0,-14.022	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1212	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2999	0/1:6:3,3:3:108:3:108:-7.85288,0,-8.26207	0/0:266:266,0:266:9516:0:0:0,-80.074,-853.778	0/0:189:189,0:189:6761:0:0:0,-56.8947,-605.437	0/0:68:68,0:68:2431:0:0:0,-20.47,-218.51	0/1:5:3,2:3:108:2:72:-5.10817,0,-8.55964	0/1:145:56,89:56:2008:89:3192:-233.829,0,-137.142	0/1:33:12,21:12:423:21:756:-55.5079,0,-28.4336	0/0:129:129,0:129:4608:0:0:0,-38.8329,-411.91	0/0:78:77,0:77:2745:0:0:0,-23.1793,-246.375	0/0:101:101,0:101:3623:0:0:0,-30.404,-325.892	0/1:138:52,86:52:1849:86:3080:-225.22,0,-123.931	0/0:107:107,0:107:3836:0:0:0,-32.2102,-342.408	0/1:210:119,91:119:4253:91:3260:-219.204,0,-319.252	0/1:152:69,83:69:2472:83:2964:-212.486,0,-176.771	0/1:58:30,28:30:1080:28:1008:-69.6005,0,-79.9715	0/0:219:219,0:219:7853:0:0:0,-65.9256,-703.831	0/1:17:8,9:8:284:9:324:-23.4242,0,-20.7707	0/1:113:38,75:38:1359:75:2683:-198.099,0,-88.3697	0/0:48:48,0:48:1720:0:0:0,-14.4494,-153.398	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0052	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.235	0/1:64:30,34:30:1067:34:1206:-85.8345,0,-76.9987	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2263	0/1:16:7,9:7:252:9:324:-23.5257,0,-18.1798	0/0:100:97,3:97:3452:3:108:0,-20.3571,-300.671	0/1:126:70,56:70:2512:56:1994:-135.785,0,-188.235	0/1:7:6,1:6:216:1:36:-1.37349,0,-17.669	0/0:232:232,0:232:8303:0:0:0,-69.839,-744.511	0/1:185:102,83:102:3645:83:2980:-203.02,0,-267.023	0/1:121:67,52:67:2393:52:1868:-126.724,0,-178.762	0/0:49:49,0:49:1756:0:0:0,-14.7505,-157.309	0/1:275:105,169:105:3776:169:6071:-444.613,0,-256.814	0/1:152:45,107:45:1620:107:3839:-286.16,0,-99.9429	0/0:23:23,0:23:828:0:0:0,-6.92369,-73.3525	0/0:94:94,0:94:3367:0:0:0,-28.2968,-302.529	0/0:108:108,0:108:3888:0:0:0,-32.5112,-349.457	0/1:18:4,14:4:144:14:500:-37.5226,0,-7.87951	0/0:114:114,0:114:4073:0:0:0,-34.3174,-366.033	0/1:83:43,39:43:1536:39:1404:-96.6453,0,-113.327	0/1:222:113,109:113:4034:109:3893:-272.364,0,-295.998	0/0:112:112,0:112:4024:0:0:0,-33.7154,-361.83	0/0:47:46,1:46:1639:1:36:0,-10.6677,-144.133	0/1:96:59,37:59:2120:37:1332:-87.3563,0,-161.93	0/0:20:19,1:19:680:1:36:0,-2.42232,-57.8705	0/0:84:84,0:84:3004:0:0:0,-25.2865,-268.75	0/0:112:112,0:112:4024:0:0:0,-33.7154,-361.776	0/0:179:179,0:179:6373:0:0:0,-53.8844,-572.925	0/1:130:54,76:54:1944:76:2715:-197.122,0,-135.843	0/0:82:82,0:82:2935:0:0:0,-24.6845,-263.121	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.079	0/0:187:185,2:185:6644:2:68:0,-49.9422,-590.487	0/1:51:20,31:20:707:31:1116:-81.8547,0,-48.538	0/0:116:116,0:116:4119:0:0:0,-34.9195,-369.88	0/0:76:76,0:76:2727:0:0:0,-22.8783,-245.036	0/1:42:28,14:28:1008:14:504:-31.5838,0,-78.2945	0/1:106:51,55:51:1823:55:1959:-138.704,0,-131.648	0/1:85:26,59:26:927:59:2111:-158.814,0,-58.011	0/0:121:121,0:121:4325:0:0:0,-36.4246,-388.978	0/0:114:114,0:114:4061:0:0:0,-34.3174,-365.384
chr04	873549	.	T	C	21623.1	PASS	AB=0.510379;ABP=5.62477;AC=42;AF=0.223404;AN=188;AO=1434;CIGAR=1X;DP=5964;DPB=5964;DPRA=1.27287;EPP=3116.9;EPPR=9837.61;GTI=0;LEN=1;MEANALT=1.02128;MQM=39.5586;MQMR=54.2579;NS=94;NUMALT=1;ODDS=0.876571;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51044;QR=161833;RO=4529;RPL=0;RPP=3116.9;RPPR=9837.61;RPR=1434;RUN=1;SAF=0;SAP=3116.9;SAR=1434;SRF=0;SRP=9837.61;SRR=4529;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.1059	0/0:72:70,2:70:2501:2:72:0,-15.2377,-216.058	0/0:79:79,0:79:2827:0:0:0,-23.7814,-253.268	0/1:115:66,49:66:2368:49:1752:-116.353,0,-178.589	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.285	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.1305	0/1:67:43,24:43:1539:24:845:-53.2785,0,-118.366	0/0:110:109,1:109:3905:1:36:0,-29.7257,-344.797	0/1:57:32,25:32:1139:25:887:-58.5548,0,-85.3946	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.368	0/1:33:19,13:19:684:13:468:-30.7239,0,-51.8779	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.02	0/1:55:31,24:31:1112:24:851:-55.9171,0,-83.197	0/0:58:58,0:58:2067:0:0:0,-17.4597,-185.316	0/1:44:19,25:19:684:25:887:-63.5383,0,-48.4868	0/1:39:16,23:16:564:23:821:-57.3225,0,-39.2666	0/0:54:54,0:54:1940:0:0:0,-16.2556,-173.537	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.523	0/1:37:16,21:16:576:21:744:-52.4856,0,-40.7806	0/1:111:48,63:48:1709:63:2252:-161.478,0,-120.437	0/1:102:63,39:63:2248:39:1388:-87.3501,0,-171.303	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.238	0/1:47:20,27:20:720:27:964:-69.4449,0,-50.9443	0/0:77:75,2:75:2671:2:72:0,-16.7429,-232.897	0/1:27:12,15:12:432:15:525:-35.5549,0,-31.0378	0/1:239:115,124:115:4073:124:4417:-315.342,0,-293.617	0/1:105:52,53:52:1852:53:1884:-127.864,0,-133.665	0/0:32:32,0:32:1144:0:0:0,-9.63296,-102.903	0/1:167:84,83:84:3008:83:2947:-208.586,0,-220.541	0/0:54:54,0:54:1931:0:0:0,-16.2556,-173.204	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.315	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7329	0/1:12:5,7:5:180:7:252:-17.9873,0,-12.892	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7408	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6607	0/1:4:2,2:2:68:2:72:-5.23232,0,-5.24154	0/0:186:186,0:186:6680:0:0:0,-55.9916,-599.764	0/0:94:94,0:94:3342:0:0:0,-28.2968,-299.79	0/0:73:73,0:73:2611:0:0:0,-21.9752,-234.607	0/1:5:2,3:2:72:3:108:-7.98013,0,-5.32188	0/1:103:62,41:62:2215:41:1459:-90.0278,0,-167.729	0/1:42:19,23:19:676:23:824:-56.3485,0,-48.4162	0/0:82:82,0:82:2920:0:0:0,-24.6845,-261.725	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.506	0/0:56:56,0:56:2004:0:0:0,-16.8577,-179.496	0/1:71:35,36:35:1260:36:1288:-91.3599,0,-91.3713	0/0:52:52,0:52:1855:0:0:0,-15.6536,-164.765	0/1:118:53,65:53:1896:65:2322:-165.396,0,-135.191	0/1:65:22,43:22:792:43:1520:-110.242,0,-52.0062	0/1:71:35,36:35:1260:36:1280:-88.8365,0,-91.9961	0/0:134:132,2:132:4732:2:72:0,-33.6481,-418.818	0/1:4:3,1:3:108:1:36:-2.25037,0,-8.86626	0/1:69:37,32:37:1332:32:1148:-76.6073,0,-98.7826	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.0883	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5155	0/0:98:98,0:98:3516:0:0:0,-29.5009,-315.261	0/1:28:14,14:14:496:14:481:-32.4432,0,-36.5243	0/0:4:4,0:4:125:0:0:0,-1.20412,-11.5548	0/1:8:4,4:4:144:4:144:-10.558,0,-10.899	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.497	0/1:88:51,37:51:1836:37:1312:-86.0715,0,-138.805	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/0:153:152,1:152:5432:1:36:0,-42.5366,-484.104	0/1:133:61,72:61:2183:72:2572:-181.257,0,-156.232	0/1:62:32,30:32:1116:30:1072:-72.6859,0,-81.9436	0/0:79:79,0:79:2793:0:0:0,-23.7814,-250.602	0/1:95:48,47:48:1715:47:1676:-116.609,0,-125.529	0/1:81:22,59:22:788:59:2088:-154.603,0,-46.6982	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.4499	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.366	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.069	0/1:14:8,6:8:288:6:216:-13.88,0,-22.0276	0/0:56:56,0:56:1999:0:0:0,-16.8577,-178.096	0/1:40:20,20:20:716:20:716:-47.2004,0,-52.5569	0/1:85:37,48:37:1316:48:1689:-118.384,0,-92.9904	0/0:81:81,0:81:2859:0:0:0,-24.3834,-254.908	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.156	0/1:67:30,37:30:1076:37:1315:-91.8029,0,-75.317	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.9732	0/0:63:63,0:63:2256:0:0:0,-18.9649,-201.734	0/0:71:71,0:71:2536:0:0:0,-21.3731,-227.226	0/0:155:155,0:155:5551:0:0:0,-46.6596,-497.418	0/1:96:51,45:51:1832:45:1599:-109.33,0,-135.973	0/0:46:46,0:46:1628:0:0:0,-13.8474,-145.537	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.773	0/0:88:88,0:88:3139:0:0:0,-26.4906,-280.973	0/1:49:24,25:24:864:25:896:-61.2507,0,-61.154	0/0:59:59,0:59:2095:0:0:0,-17.7608,-187.403	0/0:46:46,0:46:1644:0:0:0,-13.8474,-147.156	0/1:31:13,18:13:468:18:644:-45.628,0,-33.0732	0/1:60:30,30:30:1080:30:1076:-71.5518,0,-78.9334	0/1:48:11,37:11:392:37:1319:-97.6749,0,-21.156	0/0:61:61,0:61:2152:0:0:0,-18.3628,-193.665	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.718
chr04	903463	.	C	A	20792.2	PASS	AB=0.492919;ABP=4.11739;AC=43;AF=0.228723;AN=188;AO=1264;CIGAR=1X;DP=6108;DPB=6108;DPRA=0.881244;EPP=2747.75;EPPR=10517.3;GTI=2;LEN=1;MEANALT=1.02041;MQM=59.9826;MQMR=59.9946;NS=94;NUMALT=1;ODDS=0.619066;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45176;QR=173456;RO=4842;RPL=0;RPP=2747.75;RPPR=10517.3;RPR=1264;RUN=1;SAF=1264;SAP=2747.75;SAR=0;SRF=4842;SRP=10517.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:103:54,49:54:1944:49:1737:-125.604,0,-144.23	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:56:36,20:36:1288:20:720:-48.2711,0,-99.3659	0/0:110:110,0:110:3928:0:0:0,-33.1133,-353.714	0/1:51:27,24:27:968:24:841:-60.6538,0,-72.0848	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.065	0/1:43:23,20:23:819:20:720:-52.1845,0,-61.0873	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:67:33,34:33:1188:34:1209:-88.9451,0,-87.0596	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/1:56:30,26:30:1080:26:936:-67.7018,0,-80.6556	0/1:44:22,22:22:788:22:792:-58.3604,0,-57.9995	0/0:92:92,0:92:3303:0:0:0,-27.6948,-297.487	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:38:14,24:14:500:24:860:-66.2827,0,-33.897	0/1:84:46,38:46:1636:38:1364:-97.7742,0,-122.242	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:65:27,38:27:964:38:1368:-103.854,0,-67.5099	0/0:88:82,6:82:2940:6:216:0,-6.70013,-245.043	0/1:33:23,10:23:828:10:360:-22.8103,0,-64.9101	0/1:179:81,98:81:2908:98:3498:-261.143,0,-208.071	0/1:59:26,33:26:924:33:1188:-89.4502,0,-65.7169	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.341	0/1:62:25,37:25:900:37:1302:-98.8134,0,-62.6572	0/0:99:98,1:98:3492:1:36:0,-26.2037,-310.894	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:5,3:5:180:3:93:-6.26849,0,-14.1438	0/0:164:164,0:164:5887:0:0:0,-49.3689,-529.937	0/0:163:163,0:163:5815:0:0:0,-49.0679,-523.465	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:102:44,58:44:1576:58:2065:-155.414,0,-111.427	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:63:40,23:40:1436:23:828:-55.8792,0,-110.573	0/0:92:92,0:92:3268:0:0:0,-27.6948,-294.283	0/1:127:79,48:79:2840:48:1720:-116.855,0,-217.607	0/1:62:23,39:23:824:39:1396:-107.275,0,-55.8195	0/1:91:46,45:46:1656:45:1616:-118.336,0,-121.935	0/0:63:62,1:62:2224:1:36:0,-15.3666,-196.826	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:95:52,42:52:1855:42:1500:-106.638,0,-138.572	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/1:36:11,25:11:396:25:896:-70.1233,0,-25.1457	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:21:9,12:9:324:12:428:-32.5372,0,-23.1842	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/1:98:41,57:41:1476:57:2048:-155.091,0,-103.635	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:187:187,0:187:6701:0:0:0,-56.2926,-603.163	0/1:123:67,56:67:2408:56:2008:-143.967,0,-179.949	0/1:52:20,32:20:716:32:1140:-87.2556,0,-49.1142	0/0:80:79,1:79:2827:1:36:0,-20.4841,-251.07	0/1:73:42,31:42:1504:31:1097:-77.0628,0,-113.679	0/1:70:27,43:27:964:43:1529:-116.829,0,-66.0047	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/0:39:38,1:38:1364:1:36:0,-8.14189,-119.462	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.099	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/0:91:90,0:90:3220:0:0:0,-27.0927,-289.663	0/1:32:21,11:21:752:11:396:-26.3498,0,-58.3733	0/1:95:57,38:57:2036:38:1359:-94.012,0,-154.914	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/0:102:102,0:102:3648:0:0:0,-30.7051,-328.525	0/1:98:55,43:55:1961:43:1529:-108.4,0,-147.262	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.441	0/0:71:71,0:71:2541:0:0:0,-21.3731,-228.939	0/0:207:207,0:207:7424:0:0:0,-62.3132,-668.204	0/1:74:36,38:36:1292:38:1364:-100.784,0,-94.3075	0/0:80:79,1:79:2836:1:21:0,-21.9825,-253.378	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/1:39:20,19:20:716:19:680:-49.789,0,-53.0275	0/0:60:60,0:60:2142:0:0:0,-18.0618,-193.046	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:48:30,18:30:1072:18:648:-44.2024,0,-82.343	0/1:88:47,41:47:1684:41:1472:-106.285,0,-125.356	0/1:47:19,28:19:684:28:1008:-76.8879,0,-47.7419	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:96:96,0:96:3424:0:0:0,-28.8989,-308.375
chr04	903590	.	G	A	22740.7	PASS	AB=0.477946;ABP=15.2699;AC=41;AF=0.222826;AN=184;AO=1397;CIGAR=1X;DP=6031;DPB=6031;DPRA=1.40494;EPP=3036.56;EPPR=10065.6;GTI=0;LEN=1;MEANALT=1;MQM=59.9442;MQMR=59.9635;NS=92;NUMALT=1;ODDS=2.40042;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49686;QR=163615;RO=4634;RPL=2;RPP=3019.21;RPPR=10056.9;RPR=1395;RUN=1;SAF=2;SAP=3019.21;SAR=1395;SRF=1;SRP=10056.9;SRR=4633;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1183:0:0:0,-10.235,-106.771	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.328	0/0:108:107,1:107:3768:1:36:0,-28.913,-335.722	0/1:177:96,81:96:3410:81:2865:-204.803,0,-253.833	0/0:26:25,1:25:883:1:36:0,-4.2285,-76.1892	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/1:25:7,18:7:248:18:648:-51.1261,0,-15.1384	0/0:122:121,1:121:4297:1:36:0,-33.1274,-383.115	0/1:58:28,30:28:974:30:1062:-78.4309,0,-70.5109	0/0:53:53,0:53:1839:0:0:0,-15.9546,-165.787	0/1:30:15,15:15:511:15:540:-39.9056,0,-37.2824	0/0:81:81,0:81:2847:0:0:0,-24.3834,-256.46	0/1:84:44,40:44:1561:40:1428:-103.531,0,-115.493	0/0:41:41,0:41:1451:0:0:0,-12.3422,-130.885	0/1:51:34,17:34:1200:17:599:-38.8856,0,-92.9503	0/1:48:28,20:28:983:20:712:-49.9572,0,-74.3331	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:105:46,59:46:1612:59:2120:-159.46,0,-113.758	0/1:105:57,48:57:1996:48:1716:-123.115,0,-148.302	0/0:68:68,0:68:2416:0:0:0,-20.47,-217.697	0/1:88:50,38:50:1780:38:1348:-95.1296,0,-133.992	0/1:30:25,5:25:875:5:180:-7.52116,0,-70.0306	0/1:46:27,19:27:932:19:680:-47.6818,0,-70.3423	0/1:177:96,81:96:3386:81:2885:-206.603,0,-251.674	0/1:188:107,81:107:3753:81:2877:-202.558,0,-281.379	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5438	0/1:183:94,89:94:3315:89:3148:-228.457,0,-243.481	0/0:92:91,1:91:3210:1:36:0,-24.0965,-285.524	0/0:82:81,1:81:2886:1:36:0,-21.0862,-256.378	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:20:5,15:5:176:15:536:-42.5542,0,-10.1644	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:160:160,0:160:5636:0:0:0,-48.1648,-507.346	0/0:112:112,0:112:3988:0:0:0,-33.7154,-359.112	0/0:40:40,0:40:1406:0:0:0,-12.0412,-126.831	.:.:.:.:.:.:.:.	0/1:100:52,48:52:1859:48:1712:-124.252,0,-137.486	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:124:123,1:123:4361:1:36:0,-33.7294,-389.061	0/0:49:49,0:49:1735:0:0:0,-14.7505,-156.432	0/0:55:55,0:55:1896:0:0:0,-16.5566,-170.913	0/1:89:50,39:50:1760:39:1404:-99.8676,0,-131.889	0/0:74:74,0:74:2608:0:0:0,-22.2762,-234.968	0/1:117:61,56:61:2147:56:1988:-143.96,0,-158.275	0/1:73:39,34:39:1357:34:1186:-85.0667,0,-100.448	0/1:83:43,40:43:1523:40:1432:-104.192,0,-112.377	0/0:103:102,1:102:3607:1:36:0,-27.4078,-321.239	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/1:85:41,44:41:1454:44:1572:-116.184,0,-105.567	0/0:95:95,0:95:3377:0:0:0,-28.5978,-304.145	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:78:78,0:78:2698:0:0:0,-23.4803,-243.061	0/1:37:21,16:21:739:16:564:-39.9522,0,-55.6943	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:45:45,0:45:1562:0:0:0,-13.5463,-140.866	0/1:85:47,38:47:1661:38:1347:-95.9419,0,-124.188	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:143:143,0:143:5045:0:0:0,-43.0473,-454.195	0/1:100:49,51:49:1708:51:1828:-134.698,0,-123.899	0/1:42:29,13:29:1036:13:464:-29.4542,0,-80.9107	0/0:55:55,0:55:1930:0:0:0,-16.5566,-173.976	0/1:89:45,44:45:1599:44:1568:-114.614,0,-117.408	0/1:95:31,64:31:1108:64:2275:-176.414,0,-71.4308	0/0:28:28,0:28:984:0:0:0,-8.42884,-88.8734	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:47:47,0:47:1652:0:0:0,-14.1484,-148.965	0/1:17:7,10:7:252:10:352:-26.8924,0,-17.9114	0/0:91:90,1:90:3174:1:36:0,-23.7955,-282.096	0/1:70:29,41:29:1020:41:1455:-110.173,0,-70.9702	0/1:77:44,33:44:1568:33:1158:-81.3457,0,-118.232	0/0:87:87,0:87:3082:0:0:0,-26.1896,-277.607	0/0:82:81,1:81:2871:1:36:0,-21.0862,-255.027	0/1:65:39,26:39:1404:26:924:-63.9107,0,-107.092	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.44	0/0:88:88,0:88:3090:0:0:0,-26.4906,-278.325	0/0:131:131,0:131:4604:0:0:0,-39.4349,-414.531	0/1:52:26,26:26:917:26:920:-67.4635,0,-67.191	0/0:62:62,0:62:2210:0:0:0,-18.6639,-199.161	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:103:103,0:103:3622:0:0:0,-31.0061,-326.183	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/0:45:45,0:45:1594:0:0:0,-13.5463,-143.749	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:33:21,12:21:739:12:432:-29.2765,0,-56.8984	0/1:65:41,24:41:1451:24:860:-58.1549,0,-111.318	0/1:58:15,43:15:540:43:1501:-117.917,0,-31.4768	0/0:76:76,0:76:2693:0:0:0,-22.8783,-242.614	0/0:104:103,1:103:3649:1:36:0,-27.7088,-325.017
chr04	903632	.	GTCG	ATCA,GTCA	130104	PASS	AB=0.522867,0.475085;ABP=16.3178,18.8079;AC=143,41;AF=0.777174,0.222826;AN=184;AO=4696,1398;CIGAR=1X2M1X,3M1X;DP=6116;DPB=6116;DPRA=0,1.26232;EPP=10200.2,3038.73;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.73913,2.19149;MQM=59.9655,59.9092;MQMR=60;NS=92;NUMALT=2;ODDS=2.71502;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=166201,50002;QR=32;RO=1;RPL=4696,1398;RPP=10200.2,3038.73;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10200.2,3038.73;SAR=4696,1398;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34,0:0:0:34,0:1196,0:-107.945,-10.235,0,-107.945,-10.235,-107.945	1/1:33:0,33,0:0:0:33,0:1175,0:-106.05,-9.93399,0,-106.05,-9.93399,-106.05	1/1:108:0,106,1:0:0:106,1:3728,36:-335.394,-31.9092,0,-332.456,-28.9418,-332.155	1/2:178:0,97,81:0:0:97,81:3431,2904:-516.662,-237.212,-208.012,-279.806,0,-255.423	1/1:26:0,25,1:0:0:25,1:896,36:-80.6009,-7.52575,0,-77.6634,-4.22851,-77.3624	1/1:14:0,14,0:0:0:14,0:499,0:-45.2458,-4.21442,0,-45.2458,-4.21442,-45.2458	1/2:25:0,7,18:0:0:7,18:246,648:-73.254,-53.2333,-51.1261,-20.3744,0,-14.9558	1/1:122:0,121,0:0:0:121,0:4280,0:-385.121,-36.4246,0,-385.121,-36.4246,-385.121	1/2:60:0,29,31:0:0:29,31:1019,1089:-171.925,-88.9854,-80.2555,-83.2904,0,-73.9585	1/1:54:0,54,0:0:0:54,0:1920,0:-173.077,-16.2556,0,-173.077,-16.2556,-173.077	1/2:31:0,17,14:0:0:17,14:604,491:-89.5271,-40.3067,-35.1892,-49.573,0,-45.3586	1/1:82:0,82,0:0:0:82,0:2935,0:-264.377,-24.6845,0,-264.377,-24.6845,-264.377	1/2:83:0,45,37:0:0:45,37:1604,1315:-237.901,-107.153,-93.6069,-130.744,0,-119.606	1/1:41:0,41,0:0:0:41,0:1426,0:-128.632,-12.3422,0,-128.632,-12.3422,-128.632	1/2:52:0,35,17:0:0:35,17:1234,599:-149.596,-49.1206,-38.5845,-100.827,0,-95.7097	1/2:47:0,27,20:0:0:27,20:965,720:-137.788,-59.1082,-50.9804,-79.039,0,-73.0184	1/1:18:0,18,0:0:0:18,0:636,0:-57.5667,-5.41854,0,-57.5667,-5.41854,-57.5667	1/1:24:0,24,0:0:0:24,0:855,0:-77.2704,-7.22472,0,-77.2704,-7.22472,-77.2704	1/2:17:0,7,10:0:0:7,10:251,360:-50.2057,-29.734,-27.6268,-20.8306,0,-17.8203	1/2:110:0,46,64:0:0:46,64:1606,2292:-317.902,-187.275,-173.428,-130.979,0,-111.713	1/2:106:0,58,48:0:0:58,48:2044,1724:-307.408,-140.994,-123.534,-166.77,0,-152.321	1/1:70:0,69,0:0:0:69,0:2450,0:-220.395,-20.7711,0,-220.395,-20.7711,-220.395	1/2:87:0,50,37:0:0:50,37:1774,1332:-253.577,-109.044,-93.9928,-144.891,0,-133.753	1/2:30:0,25,5:0:0:25,5:865,180:-85.3233,-15.0469,-7.52116,-70.6339,0,-69.1287	1/2:47:0,27,20:0:0:27,20:937,720:-135.268,-59.1082,-50.9804,-76.5143,0,-70.4937	1/2:178:0,94,84:0:0:94,84:3351,3024:-519.401,-246.247,-217.95,-273.511,0,-248.225	1/2:187:0,106,79:0:0:106,79:3737,2828:-534.946,-230.676,-198.767,-304.324,0,-280.542	1/1:28:0,27,0:0:0:27,0:961,0:-86.485,-8.12781,0,-86.485,-8.12781,-86.485	1/2:184:0,94,90:0:0:94,90:3319,3228:-533.925,-263.649,-235.352,-270.632,0,-243.539	1/1:96:0,95,1:0:0:95,1:3368,32:-303.017,-28.5979,0,-300.439,-25.6996,-300.138	1/1:85:0,85,0:0:0:85,0:2999,0:-270.143,-25.5876,0,-270.143,-25.5876,-270.143	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:20:0,5,15:0:0:5,15:180,536:-58.7471,-44.0594,-42.5542,-15.0469,0,-10.5315	.:.:.:.:.:.:.:.	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:8:0,6,2:0:0:6,2:204,72:-22.7667,-6.23466,-4.42848,-16.8869,0,-16.2848	1/1:161:1,159,0:1:32:159,0:5614,0:-502.158,-45.3054,0,-502.459,-47.8638,-505.037	1/1:113:0,113,0:0:0:113,0:4009,0:-361.002,-34.0164,0,-361.002,-34.0164,-361.002	1/1:41:0,41,0:0:0:41,0:1456,0:-131.332,-12.3422,0,-131.332,-12.3422,-131.332	.:.:.:.:.:.:.:.	1/2:99:0,52,47:0:0:52,47:1861,1680:-289.087,-137.328,-121.675,-152.116,0,-137.968	1/1:23:0,23,0:0:0:23,0:826,0:-74.6639,-6.92369,0,-74.6639,-6.92369,-74.6639	1/1:128:0,126,1:0:0:126,1:4448,36:-400.133,-37.9298,0,-397.196,-34.9924,-396.895	1/1:51:0,51,0:0:0:51,0:1793,0:-161.648,-15.3525,0,-161.648,-15.3525,-161.648	1/1:55:0,54,0:0:0:54,0:1906,0:-171.565,-16.2556,0,-171.565,-16.2556,-171.565	1/2:92:0,50,42:0:0:50,42:1764,1508:-267.007,-123.371,-108.32,-143.992,0,-131.348	1/1:77:0,77,0:0:0:77,0:2718,0:-244.861,-23.1793,0,-244.861,-23.1793,-244.861	1/2:118:0,60,58:0:0:60,58:2075,2076:-338.24,-169.637,-151.575,-168.955,0,-151.495	1/2:71:0,40,30:0:0:40,30:1398,1076:-201.482,-87.7622,-75.721,-113.715,0,-104.684	1/2:84:0,43,41:0:0:43,41:1534,1463:-244.675,-119.623,-106.679,-125.409,0,-113.067	1/1:104:0,103,0:0:0:103,0:3656,0:-328.946,-31.0061,0,-328.946,-31.0061,-328.946	1/2:8:0,1,7:0:0:1,7:36,252:-23.8592,-20.9217,-20.6207,-3.29724,0,-1.19003	1/2:86:0,42,44:0:0:42,44:1494,1580:-251,-129.246,-116.603,-122.111,0,-108.865	1/1:97:0,97,0:0:0:97,0:3439,0:-309.723,-29.1999,0,-309.723,-29.1999,-309.723	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:81:0,80,0:0:0:80,0:2823,0:-253.951,-24.0824,0,-253.951,-24.0824,-253.951	1/2:37:0,20,16:0:0:20,16:715,572:-104.937,-46.6373,-40.6167,-58.297,0,-53.4806	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:5:0,2,3:0:0:2,3:72,104:-14.6799,-8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chr04	1118867	.	G	A	28435.9	PASS	AB=0.354349;ABP=1034.71;AC=42;AF=0.223404;AN=188;AO=1991;CIGAR=1X;DP=13171;DPB=13171;DPRA=1.04395;EPP=4239.99;EPPR=24015.9;GTI=3;LEN=1;MEANALT=1.02174;MQM=52.4917;MQMR=41.8526;NS=94;NUMALT=1;ODDS=1.25713;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71433;QR=393057;RO=11178;RPL=1980;RPP=4231.39;RPPR=211.512;RPR=11;RUN=1;SAF=1990;SAP=4317.73;SAR=1;SRF=6137;SRP=236.362;SRR=5041;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.325	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.871	0/0:163:163,0:163:5826:0:0:0,-49.0679,-524.34	0/0:318:318,0:318:11190:0:0:0,-95.7275,-757.291	0/0:124:124,0:124:4361:0:0:0,-37.3277,-331.692	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.039	0/1:71:49,22:49:1689:22:788:-49.7422,0,-73.768	0/0:146:146,0:146:5162:0:0:0,-43.9504,-464.656	0/1:100:53,47:53:1880:47:1680:-121.003,0,-139.329	0/0:203:203,0:203:7060:0:0:0,-61.1091,-481.376	0/0:107:107,0:107:3755:0:0:0,-32.2102,-259.42	0/0:111:111,0:111:3966:0:0:0,-33.4143,-357.114	0/1:93:40,53:40:1418:53:1904:-142.465,0,-99.8874	0/0:123:123,0:123:4325:0:0:0,-37.0267,-296.168	0/1:157:97,60:97:3445:60:2160:-146.852,0,-207.433	0/1:100:65,35:65:2281:35:1260:-83.1351,0,-141.031	0/0:48:48,0:48:1719:0:0:0,-14.4494,-154.981	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.44	0/1:31:19,12:19:680:12:432:-29.7907,0,-52.1963	0/1:238:141,97:141:4976:97:3484:-241.168,0,-263.922	0/1:258:176,82:176:6145:82:2948:-186.59,0,-365.929	0/0:150:150,0:150:5262:0:0:0,-45.1545,-401.847	0/1:184:110,74:110:3920:74:2656:-183.451,0,-254.904	0/0:222:221,1:221:7633:1:36:0,-63.2355,-493.377	0/1:123:91,32:91:3218:32:1148:-66.4237,0,-222.395	0/1:309:220,89:220:7681:89:3188:-193.044,0,-419.617	0/1:366:252,113:252:8850:113:4068:-254.972,0,-539.739	0/0:105:105,0:105:3705:0:0:0,-31.6081,-268.552	0/1:295:197,98:197:6940:98:3525:-227.516,0,-409.228	0/0:293:289,4:289:10096:4:144:0,-74.907,-590.801	0/0:219:219,0:219:7715:0:0:0,-65.9256,-519.494	0/1:11:5,6:5:176:6:216:-16.4475,0,-9.91037	0/1:10:3,7:3:99:7:252:-19.9824,0,-3.65447	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.87105	0/0:384:383,0:383:13365:0:0:0,-115.294,-947.576	0/0:206:205,1:205:6974:1:36:0,-58.419,-445.669	0/0:69:69,0:69:2450:0:0:0,-20.7711,-220.688	0/1:3:1,2:1:36:2:72:-5.92394,0,-0.890188	0/1:235:158,77:158:5552:77:2758:-176.679,0,-322.796	0/0:89:89,0:89:3155:0:0:0,-26.7917,-230.787	0/1:195:115,80:115:4063:80:2876:-199.84,0,-212.02	0/1:110:78,32:78:2736:32:1144:-68.7753,0,-142.052	0/0:152:152,0:152:5353:0:0:0,-45.7566,-387.617	0/1:149:96,53:96:3375:53:1895:-125.059,0,-191.784	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.434	0/1:161:129,32:129:4527:32:1133:-53.6239,0,-214.257	0/1:117:74,43:74:2598:43:1533:-102.479,0,-131.85	0/1:168:129,39:129:4535:39:1404:-75.5643,0,-221.556	0/0:267:266,1:266:9318:1:36:0,-76.7858,-634.615	0/1:3:2,1:2:72:1:36:-2.68833,0,-4.31222	0/1:259:155,104:155:5568:104:3740:-257.734,0,-423.217	0/0:59:59,0:59:2067:0:0:0,-17.7608,-174.469	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:217:217,0:217:7552:0:0:0,-65.3235,-550.051	0/1:89:65,24:65:2296:24:860:-50.7864,0,-143.85	0/0:11:11,0:11:379:0:0:0,-3.31133,-24.8775	0/0:13:13,0:13:447:0:0:0,-3.91339,-25.8651	0/0:225:225,0:225:7942:0:0:0,-67.7317,-595.769	0/1:153:108,45:108:3812:45:1619:-99.4754,0,-224.777	0/1:10:3,7:3:99:7:252:-19.7884,0,-2.23495	0/0:254:254,0:254:8903:0:0:0,-76.4616,-597.777	0/1:192:130,62:130:4464:62:2209:-139.879,0,-224.719	0/1:107:79,28:79:2803:28:1000:-57.9745,0,-143.795	0/0:126:126,0:126:4389:0:0:0,-37.9298,-316.26	0/1:218:146,72:146:5148:72:2572:-165.336,0,-282.823	0/1:200:94,106:94:3323:106:3804:-279.958,0,-181.873	0/0:77:77,0:77:2717:0:0:0,-23.1793,-218.444	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.861	0/0:140:140,0:140:4893:0:0:0,-42.1442,-332.872	0/1:28:18,10:18:600:10:360:-24.2511,0,-28.1776	0/0:91:91,0:91:3263:0:0:0,-27.3937,-293.82	0/1:73:34,39:34:1220:39:1400:-103.572,0,-88.1316	0/1:240:158,82:158:5564:82:2933:-190.783,0,-310.313	0/0:452:452,0:452:15906:0:0:0,-136.066,-1116.5	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.947	0/1:93:41,52:41:1468:52:1872:-140.338,0,-104.412	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:342:342,0:342:12077:0:0:0,-102.952,-862.809	0/0:125:125,0:125:4467:0:0:0,-37.6287,-401.973	0/0:337:337,0:337:11797:0:0:0,-101.447,-792.204	0/1:122:84,38:84:2924:38:1364:-85.5533,0,-159.109	0/0:150:150,0:150:5325:0:0:0,-45.1545,-400.639	0/0:207:207,0:207:7227:0:0:0,-62.3132,-441.173	0/0:285:285,0:285:10053:0:0:0,-85.7935,-696.432	0/1:34:19,15:19:675:15:536:-38.2217,0,-50.8245	0/0:51:51,0:51:1802:0:0:0,-15.3525,-162.376	0/0:93:93,0:93:3309:0:0:0,-27.9958,-297.901	0/1:64:43,21:43:1500:21:756:-49.0008,0,-89.2294	0/1:119:72,47:72:2563:47:1692:-115.486,0,-160.412	0/1:107:62,45:62:2193:45:1616:-113.246,0,-126.179	0/0:150:150,0:150:5240:0:0:0,-45.1545,-372.836	0/0:232:232,0:232:8093:0:0:0,-69.839,-561.494
chr04	1130916	.	T	C	182416	PASS	AB=0.489921;ABP=7.16849;AC=143;AF=0.760638;AN=188;AO=7492;CIGAR=1X;DP=9914;DPB=9914;DPRA=26.6398;EPP=7254.78;EPPR=2026.96;GTI=1;LEN=1;MEANALT=1.08602;MQM=59.8905;MQMR=59.9959;NS=94;NUMALT=1;ODDS=1.43381;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262056;QR=86086;RO=2414;RPL=6247;RPP=7254.78;RPPR=2026.96;RPR=1245;RUN=1;SAF=7492;SAP=16271.7;SAR=0;SRF=2414;SRP=5244.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:60:0,60:0:0:60:2085:-187.917,-18.0618,0	1/1:133:1,132:1:36:132:4615:-411.91,-36.4387,0	1/1:136:0,135:0:0:135:4763:-428.472,-40.6391,0	1/1:157:1,156:1:36:156:5488:-490.399,-43.6639,0	1/1:65:0,65:0:0:65:2297:-206.989,-19.567,0	1/1:57:0,57:0:0:57:2011:-181.261,-17.1587,0	0/1:144:67,77:67:2395:77:2742:-203.674,0,-172.458	1/1:190:0,189:0:0:189:6662:-599.302,-56.8947,0	0/1:125:63,62:63:2251:62:2160:-157.034,0,-165.224	1/1:128:0,128:0:0:128:4392:-395.401,-38.5318,0	1/1:39:1,38:1:36:38:1319:-115.407,-8.1419,0	1/1:76:0,76:0:0:76:2553:-230.017,-22.8783,0	0/1:86:39,47:39:1383:47:1634:-121.455,0,-98.8795	1/1:63:0,63:0:0:63:2220:-200.063,-18.9649,0	0/1:89:37,51:37:1314:51:1750:-131.045,0,-91.8266	0/1:53:32,21:32:1148:21:727:-49.7949,0,-87.6752	1/1:56:0,56:0:0:56:1938:-174.69,-16.8577,0	1/1:59:0,59:0:0:59:2051:-184.857,-17.7608,0	0/1:40:19,21:19:680:21:735:-54.4302,0,-49.488	0/1:196:89,106:89:3185:106:3719:-275.852,0,-227.811	0/1:145:70,75:70:2495:75:2616:-192.035,0,-181.153	1/1:161:0,161:0:0:161:5680:-511.247,-48.4658,0	0/1:79:35,44:35:1252:44:1552:-116.188,0,-89.2037	1/1:142:1,141:1:36:141:4936:-440.797,-39.148,0	0/1:94:36,58:36:1279:58:1995:-151.521,0,-87.1156	0/1:378:173,205:173:6207:205:7210:-535.146,0,-444.935	0/1:128:55,73:55:1934:73:2570:-193.018,0,-135.801	1/1:34:0,34:0:0:34:1182:-106.682,-10.235,0	0/1:293:195,98:195:6970:98:3478:-224.949,0,-539.16	1/1:119:0,119:0:0:119:4208:-378.901,-35.8226,0	1/1:128:0,128:0:0:128:4518:-406.79,-38.5318,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:13:7,6:7:252:6:207:-15.0535,0,-19.1156	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:245:0,245:0:0:245:8512:-765.826,-73.7524,0	1/1:256:0,256:0:0:256:8968:-807.114,-77.0637,0	1/1:61:0,61:0:0:61:2095:-188.798,-18.3628,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:112:54,58:54:1932:58:2054:-151.413,0,-140.441	1/1:36:0,36:0:0:36:1240:-111.894,-10.8371,0	0/1:185:65,120:65:2336:120:4215:-323.754,0,-154.809	0/1:100:57,43:57:2012:43:1497:-104.918,0,-151.248	1/1:84:0,84:0:0:84:2887:-260.066,-25.2865,0	0/1:163:81,82:81:2892:82:2858:-208.333,0,-211.449	1/1:155:0,155:0:0:155:5460:-490.748,-46.6597,0	0/1:208:108,100:108:3848:100:3544:-256.465,0,-283.901	0/1:122:59,63:59:2107:63:2252:-166.218,0,-153.173	0/1:123:69,54:69:2469:54:1933:-137.191,0,-185.435	1/1:240:0,239:0:0:239:8418:-757.188,-71.9462,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:127:49,78:49:1751:78:2760:-210.413,0,-119.643	1/1:44:0,44:0:0:44:1546:-139.414,-13.2453,0	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	1/1:120:0,120:0:0:120:4234:-381.243,-36.1236,0	0/1:72:30,42:30:1072:42:1468:-110.738,0,-75.1183	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:71:0,70:0:0:70:2477:-222.823,-21.0721,0	0/1:132:67,65:67:2395:65:2246:-162.609,0,-176.071	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:207:1,206:1:36:206:7212:-645.387,-58.7149,0	0/1:164:107,57:107:3822:57:2028:-133.424,0,-294.808	0/1:87:33,54:33:1172:54:1885:-143.734,0,-79.5979	1/1:87:0,87:0:0:87:3062:-275.809,-26.1896,0	0/1:188:101,87:101:3593:87:3072:-220.115,0,-266.979	0/1:173:113,60:113:4043:60:2082:-135.483,0,-311.979	1/1:18:0,18:0:0:18:609:-55.1274,-5.41854,0	1/1:61:3,58:3:104:58:2080:-177.767,-8.66002,0	1/1:78:0,78:0:0:78:2668:-240.132,-23.4803,0	0/1:15:6,9:6:216:9:324:-24.9338,0,-15.2751	1/1:117:0,117:0:0:117:4091:-368.376,-35.2205,0	0/1:91:55,36:55:1935:36:1248:-85.2251,0,-147.028	0/1:150:81,69:81:2886:69:2431:-173.889,0,-214.821	1/1:184:0,184:0:0:184:6515:-586.383,-55.3895,0	0/1:117:64,53:64:2287:53:1853:-131.798,0,-170.871	0/1:117:77,40:77:2730:40:1400:-91.0738,0,-210.72	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:93:0,93:0:0:93:3244:-291.865,-27.9958,0	1/1:98:0,98:0:0:98:3459:-311.521,-29.5009,0	1/1:341:0,340:0:0:340:11889:-1069.47,-102.35,0	0/1:131:61,70:61:2175:70:2402:-176.995,0,-156.581	1/1:60:0,60:0:0:60:2029:-182.873,-18.0618,0	1/1:115:0,115:0:0:115:3917:-352.722,-34.6185,0	1/1:174:0,173:0:0:173:6008:-540.614,-52.0782,0	0/1:50:26,24:26:908:24:843:-61.1346,0,-66.981	1/1:118:0,118:0:0:118:4096:-368.828,-35.5215,0	1/1:68:0,68:0:0:68:2340:-210.855,-20.47,0	0/1:44:18,26:18:624:26:890:-67.163,0,-43.2361	0/1:84:50,34:50:1785:34:1126:-76.3465,0,-135.644	0/1:68:46,22:46:1635:22:771:-49.2397,0,-126.968	1/1:121:0,121:0:0:121:4218:-379.801,-36.4246,0	1/1:117:0,117:0:0:117:4043:-364.057,-35.2205,0
chr04	1141902	.	G	A	22579.9	PASS	AB=0.441277;ABP=99.6674;AC=43;AF=0.228723;AN=188;AO=1432;CIGAR=1X;DP=6811;DPB=6811;DPRA=1.11216;EPP=3112.56;EPPR=11676.8;GTI=0;LEN=1;MEANALT=1.02174;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=1.50247;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51081;QR=192481;RO=5376;RPL=1432;RPP=3112.56;RPPR=11676.8;RPR=0;RUN=1;SAF=0;SAP=3112.56;SAR=1432;SRF=0;SRP=11676.8;SRR=5376;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:170:170,0:170:6108:0:0:0,-51.1751,-549.818	0/0:260:259,0:259:9276:0:0:0,-77.9668,-834.447	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:44:27,17:27:968:17:593:-40.4494,0,-74.192	0/0:114:113,1:113:4031:1:36:0,-30.7191,-359.381	0/1:37:17,20:17:604:20:705:-52.6347,0,-43.5525	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:43:23,20:23:820:20:720:-52.1845,0,-61.1782	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:55:25,30:25:891:30:1080:-80.9566,0,-63.9521	0/1:35:19,16:19:663:16:572:-41.2774,0,-49.4574	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:106:72,34:72:2580:34:1212:-77.4771,0,-200.54	0/1:118:34,84:34:1220:84:2993:-234.079,0,-74.5853	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.792	0/1:101:60,41:60:2148:41:1449:-100.3,0,-163.183	0/0:55:54,1:54:1940:1:36:0,-12.9584,-171.278	0/1:52:23,29:23:820:29:1040:-78.2608,0,-58.469	0/1:277:182,93:182:6516:93:3328:-216.594,0,-503.381	0/1:160:87,73:87:3124:73:2605:-186.532,0,-233.221	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:171:92,79:92:3270:79:2796:-200.403,0,-243.042	0/0:118:112,6:112:4020:6:216:0,-15.731,-342.197	0/0:132:132,0:132:4728:0:0:0,-39.736,-425.679	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:27:14,13:14:496:13:460:-33.6076,0,-36.8465	0/0:125:125,0:125:4470:0:0:0,-37.6287,-402.469	0/0:138:138,0:138:4936:0:0:0,-41.5421,-444.391	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:119:76,43:76:2716:43:1527:-101.898,0,-208.861	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:147:83,64:83:2960:64:2296:-162.65,0,-222.383	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:83:43,40:43:1540:40:1432:-104.192,0,-113.908	0/0:106:106,0:106:3783:0:0:0,-31.9092,-340.669	0/1:114:57,57:57:2044:57:2052:-150.634,0,-149.914	0/1:60:42,18:42:1500:18:644:-40.2288,0,-117.233	0/1:108:69,39:69:2465:39:1393:-93.1567,0,-189.591	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:86:51,35:51:1828:35:1260:-87.8169,0,-138.912	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:147:147,0:147:5251:0:0:0,-44.2514,-472.728	0/1:32:18,14:18:648:14:496:-35.3413,0,-49.0189	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:16:8,8:8:288:8:273:-20.0837,0,-21.4509	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:74:41,33:41:1476:33:1172:-83.5101,0,-110.86	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:160:160,0:160:5728:0:0:0,-48.1648,-515.637	0/1:126:86,40:86:3080:40:1428:-90.8878,0,-239.498	0/1:42:26,16:26:932:16:568:-38.8086,0,-71.5556	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/1:146:92,54:92:3296:54:1940:-130.926,0,-252.909	0/1:190:67,123:67:2404:123:4380:-337.176,0,-159.421	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.157	0/1:63:41,22:41:1468:22:788:-52.2799,0,-113.451	0/1:115:68,47:68:2420:47:1665:-115.517,0,-183.438	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:77:49,28:49:1756:28:989:-66.1427,0,-135.145	0/1:60:27,33:27:972:33:1184:-88.8065,0,-69.7361	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/0:209:209,0:209:7493:0:0:0,-62.9153,-674.409	0/1:97:37,60:37:1332:60:2152:-164.747,0,-90.9825	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:26:16,10:16:576:10:356:-24.5545,0,-44.3482	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	0/1:67:44,23:44:1576:23:809:-52.9593,0,-121.963	0/1:27:12,15:12:432:15:536:-40.447,0,-31.0934	0/0:110:110,0:110:3932:0:0:0,-33.1133,-354.073	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02
chr04	1149265	.	AT	AA	72655.6	PASS	AB=0.44748;ABP=53.8747;AC=142;AF=0.763441;AN=186;AO=3443;CIGAR=1M1X;DP=4634;DPB=4634;DPRA=16.779;EPP=7462.03;EPPR=2576.21;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.9837;MQMR=59.9578;NS=93;NUMALT=1;ODDS=1.05166;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123009;QR=42007;RO=1185;RPL=2;RPP=7462.03;RPPR=2576.21;RPR=3441;RUN=1;SAF=0;SAP=7479.39;SAR=3443;SRF=0;SRP=2576.21;SRR=1185;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,5:0:0:5:180:-16.2838,-1.50515,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:70:0,70:0:0:70:2492:-224.531,-21.0721,0	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:41:18,23:18:629:23:828:-62.5019,0,-43.6509	1/1:41:0,41:0:0:41:1433:-129.232,-12.3422,0	0/1:16:11,5:11:390:5:180:-11.7356,0,-30.6225	1/1:76:1,75:1:36:75:2696:-239.286,-19.28,0	1/1:49:0,49:0:0:49:1729:-155.893,-14.7505,0	1/1:52:0,52:0:0:52:1845:-166.328,-15.6536,0	0/1:58:26,32:26:929:32:1131:-84.638,0,-66.4687	1/1:72:0,72:0:0:72:2560:-230.648,-21.6742,0	0/1:52:27,25:27:961:25:891:-64.847,0,-71.1517	0/1:39:27,12:27:955:12:428:-27.1186,0,-74.5246	1/1:39:0,38:0:0:38:1359:-122.357,-11.4391,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:25:12,13:12:419:13:460:-34.2096,0,-30.5166	0/1:155:86,69:86:2995:69:2459:-174.905,0,-223.121	0/1:96:60,36:60:2158:36:1288:-87.3247,0,-165.588	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:21:14,7:14:500:7:252:-16.7073,0,-39.0148	1/1:35:1,34:1:36:34:1216:-106.148,-6.93778,0	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:99:58,41:58:2058:41:1476:-103.334,0,-155.685	0/1:42:21,21:21:752:21:756:-55.724,0,-55.3632	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:61:35,26:35:1231:26:936:-66.1966,0,-92.7285	1/1:183:10,173:10:344:173:6204:-527.136,-23.7977,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:5,1:5:162:1:36:-1.79209,0,-13.0926	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	1/1:91:0,91:0:0:91:3249:-292.63,-27.3937,0	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	1/1:43:0,43:0:0:43:1520:-137.09,-12.9443,0	0/1:3:1,2:1:25:2:72:-5.93363,0,-1.59677	0/1:77:47,30:47:1677:30:1067:-73.1619,0,-128.037	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:48:24,24:24:849:24:855:-62.8207,0,-62.2795	0/1:44:19,25:19:671:25:881:-66.3605,0,-47.4702	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:42:24,18:24:847:18:638:-45.1052,0,-63.9054	1/1:57:0,57:0:0:57:2028:-182.79,-17.1587,0	0/1:65:40,25:40:1429:25:862:-58.3238,0,-109.339	0/1:42:22,20:22:779:20:703:-50.9503,0,-57.7885	0/1:73:38,34:38:1345:34:1209:-87.0803,0,-99.3148	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:62:32,30:32:1150:30:1080:-78.8494,0,-85.1462	1/1:49:0,49:0:0:49:1755:-158.233,-14.7505,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:4:3,1:3:106:1:36:-2.39415,0,-8.68498	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:14:11,3:11:396:3:99:-5.02216,0,-31.7683	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:62:28,34:28:1003:34:1196:-89.2788,0,-71.9218	.:.:.:.:.:.:.:.	1/1:167:1,166:1:25:166:5953:-533.374,-47.7721,0	0/1:93:54,39:54:1927:39:1392:-97.5832,0,-145.71	0/1:41:28,10:28:983:10:360:-20.9607,0,-77.002	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:89:37,52:37:1310:52:1868:-141.608,0,-91.409	0/1:95:68,27:68:2405:27:968:-58.8395,0,-188.107	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:34:0,34:0:0:34:1202:-108.484,-10.235,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:22:10,12:10:358:12:432:-32.5985,0,-25.9402	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:52:28,24:28:1002:24:856:-61.7075,0,-74.8424	0/1:39:25,14:25:883:14:504:-33.9579,0,-68.047	1/1:94:0,94:0:0:94:3374:-303.874,-28.2968,0	0/1:47:27,20:27:948:20:720:-50.9804,0,-71.4841	0/1:108:59,49:59:2114:49:1734:-123.83,0,-158.018	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:77:0,77:0:0:77:2742:-247.021,-23.1793,0	0/1:45:26,19:26:926:19:684:-48.344,0,-70.1119	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	0/1:20:8,12:8:286:12:432:-33.2006,0,-20.0649	1/1:49:0,49:0:0:49:1737:-156.613,-14.7505,0	1/1:35:0,35:0:0:35:1251:-112.894,-10.5361,0	0/1:56:27,29:27:924:29:1023:-75.5241,0,-66.61	0/1:93:46,47:46:1648:47:1673:-122.859,0,-120.612	0/1:40:25,15:25:896:15:536:-36.5336,0,-68.9194	1/1:88:0,88:0:0:88:3129:-281.835,-26.4906,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0
chr04	1149287	.	G	A	19907	PASS	AB=0.547438;ABP=44.2147;AC=44;AF=0.236559;AN=186;AO=1168;CIGAR=1X;DP=4626;DPB=4626;DPRA=1.10543;EPP=2539.29;EPPR=7507.62;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9563;MQMR=59.9876;NS=93;NUMALT=1;ODDS=1.49521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41780;QR=123472;RO=3456;RPL=1168;RPP=2539.29;RPPR=7507.62;RPR=0;RUN=1;SAF=0;SAP=2539.29;SAR=1168;SRF=0;SRP=7507.62;SRR=3456;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/0:91:90,0:90:3220:0:0:0,-27.0927,-289.702	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:40:23,17:23:811:17:606:-42.3364,0,-61.2688	0/0:41:41,0:41:1464:0:0:0,-12.3422,-131.628	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/0:76:75,1:75:2688:1:36:0,-19.28,-238.566	0/0:49:49,0:49:1734:0:0:0,-14.7505,-156.343	0/0:52:52,0:52:1843:0:0:0,-15.6536,-166.15	0/1:58:32,26:32:1144:26:928:-66.3785,0,-85.8098	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:50:23,27:23:828:27:968:-72.3859,0,-59.7844	0/1:38:11,27:11:387:27:959:-75.1863,0,-23.7268	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:26:14,12:14:492:12:432:-31.3944,0,-36.7856	0/1:153:69,84:69:2468:84:2986:-222.912,0,-176.317	0/1:94:36,58:36:1296:58:2073:-158.543,0,-88.6471	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:21:7,14:7:248:14:504:-39.3765,0,-16.3426	0/0:35:34,1:34:1207:1:36:0,-6.93777,-105.337	0/1:22:12,10:12:420:10:356:-25.7586,0,-31.5114	0/1:99:42,57:42:1508:57:2048:-154.761,0,-106.213	0/1:42:21,21:21:756:21:756:-55.724,0,-55.724	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:62:28,34:28:1004:34:1216:-91.0827,0,-72.012	0/0:182:173,9:173:6165:9:320:0,-25.6451,-525.808	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/0:94:94,0:94:3350:0:0:0,-28.2968,-301.717	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:75:29,46:29:1036:46:1652:-126.391,0,-70.9767	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:47:24,23:24:860:23:819:-59.8832,0,-63.5734	0/1:45:25,20:25:896:20:716:-51.2214,0,-67.414	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:42:18,24:18:644:24:860:-65.0786,0,-45.6473	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/1:63:24,39:24:864:39:1404:-107.694,0,-59.1177	0/1:42:20,22:20:720:22:779:-57.7888,0,-52.4855	0/1:71:35,36:35:1252:36:1284:-94.4903,0,-91.6119	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:61:29,32:29:1036:32:1152:-85.6273,0,-75.1911	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:62:34,28:34:1216:28:1008:-72.3725,0,-91.0827	.:.:.:.:.:.:.:.	0/0:167:167,0:167:5967:0:0:0,-50.272,-537.138	0/1:90:38,52:38:1364:52:1860:-140.587,0,-95.968	0/1:41:13,27:13:464:27:968:-75.0364,0,-29.6967	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:89:51,38:51:1815:38:1356:-95.5488,0,-136.839	0/1:95:26,69:26:924:69:2460:-193.055,0,-54.8798	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/1:22:12,10:12:428:10:360:-26.1216,0,-32.2361	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:53:25,28:25:887:28:1008:-75.0818,0,-64.1935	0/1:39:15,24:15:540:24:860:-65.9817,0,-37.1964	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/1:46:20,26:20:720:26:932:-70.3515,0,-51.2814	0/1:108:49,59:49:1747:59:2116:-158.198,0,-125.002	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.702	0/1:44:18,26:18:644:26:914:-69.3291,0,-45.0453	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.995	0/1:20:12,8:12:432:8:277:-19.2445,0,-33.2006	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:56:29,27:29:1040:27:972:-70.9402,0,-77.0567	0/1:94:49,45:49:1764:45:1612:-117.073,0,-130.747	0/1:40:15,25:15:527:25:891:-68.4676,0,-35.719	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.471	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468
chr04	1185817	.	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chr04	1185823	.	T	A	82133.8	PASS	AB=0.456269;ABP=45.9322;AC=141;AF=0.75;AN=188;AO=3867;CIGAR=1X;DP=5288;DPB=5288;DPRA=38.2971;EPP=7895.45;EPPR=2827.09;GTI=1;LEN=1;MEANALT=1.02174;MQM=48.8914;MQMR=59.9485;NS=94;NUMALT=1;ODDS=1.76885;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138161;QR=50754;RO=1418;RPL=59;RPP=7895.45;RPPR=2827.09;RPR=3808;RUN=1;SAF=3867;SAP=8400.09;SAR=0;SRF=1418;SRP=3082.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:536:-46.9417,-4.51545,0	1/1:68:2,66:2:72:66:2356:-202.798,-13.6333,0	1/1:36:0,36:0:0:36:1288:-115.152,-10.8371,0	1/1:87:0,87:0:0:87:3108:-278.057,-26.1896,0	1/1:24:0,24:0:0:24:864:-77.6592,-7.22472,0	1/1:25:0,25:0:0:25:896:-80.2219,-7.52575,0	0/1:52:29,23:29:1044:23:820:-57.5246,0,-78.6212	1/1:118:1,117:1:36:117:4151:-363.911,-31.9233,0	0/1:19:5,14:5:180:14:500:-38.5557,0,-10.8325	1/1:63:0,63:0:0:63:2264:-202.762,-18.9649,0	1/1:37:0,37:0:0:37:1328:-118.834,-11.1381,0	1/1:62:0,62:0:0:62:2209:-195.116,-18.6639,0	0/1:65:34,31:34:1224:31:1093:-77.5564,0,-90.9001	1/1:59:0,59:0:0:59:2120:-188.845,-17.7608,0	0/1:46:25,21:25:900:21:756:-54.1019,0,-67.4736	0/1:22:6,16:6:216:16:576:-45.2695,0,-13.1679	1/1:53:0,53:0:0:53:1904:-169.087,-15.9546,0	1/1:58:0,58:0:0:58:2069:-184.05,-17.4597,0	0/1:33:18,15:18:644:15:540:-38.4551,0,-48.3566	0/1:91:43,48:43:1544:48:1720:-127.077,0,-111.859	0/1:78:27,51:27:972:51:1809:-137.468,0,-64.3176	1/1:43:0,43:0:0:43:1519:-134.895,-12.9443,0	0/1:31:25,6:25:896:6:216:-10.2989,0,-71.6284	0/1:20:2,18:2:72:18:644:-51.0295,0,-0.816122	0/1:20:12,8:12:432:8:273:-18.4991,0,-33.2006	0/1:218:123,95:123:4405:95:3397:-238.784,0,-330.996	0/1:55:31,24:31:1101:24:864:-60.5859,0,-82.8417	1/1:21:0,21:0:0:21:756:-67.897,-6.32163,0	0/1:84:19,65:19:665:65:2327:-183.396,0,-34.8863	1/1:86:3,83:3:104:83:2988:-256.943,-16.1858,0	1/1:51:0,51:0:0:51:1820:-163.117,-15.3525,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:4,3:4:144:3:108:-7.65224,0,-11.2064	1/1:2:0,2:0:0:2:72:-6.77694,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.1972,-1.20412,0	0/1:8:3,5:3:104:5:180:-13.9991,0,-7.29457	1/1:153:0,153:0:0:153:5464:-489.76,-46.0576,0	1/1:92:0,92:0:0:92:3269:-289.883,-27.6948,0	1/1:50:0,50:0:0:50:1776:-156.754,-15.0515,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:59:23,36:23:824:36:1296:-97.9211,0,-56.7225	1/1:26:0,26:0:0:26:936:-83.6235,-7.82678,0	0/1:67:32,35:32:1148:35:1252:-92.1084,0,-83.4608	0/1:46:24,22:24:851:22:787:-56.897,0,-63.0621	1/1:50:0,50:0:0:50:1796:-159.869,-15.0515,0	0/1:40:30,10:30:1076:10:346:-18.9067,0,-85.1117	1/1:69:0,68:0:0:68:2436:-215.188,-20.47,0	0/1:142:79,63:79:2813:63:2256:-158.827,0,-210.662	0/1:75:47,28:47:1673:28:1001:-66.9417,0,-128.278	0/1:139:83,56:83:2984:56:1978:-134.611,0,-226.629	1/1:83:0,83:0:0:83:2964:-266.142,-24.9855,0	0/1:8:5,3:5:180:3:108:-7.63391,0,-14.1438	0/1:56:29,27:29:1040:27:972:-69.1289,0,-77.0567	1/1:14:1,13:1:36:13:449:-37.0863,-0.616145,0	1/1:19:0,19:0:0:19:684:-61.3326,-5.71957,0	1/1:41:0,41:0:0:41:1472:-131.508,-12.3422,0	0/1:9:5,4:5:180:4:144:-10.0687,0,-13.8428	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	0/1:21:11,10:11:396:10:360:-25.5417,0,-29.6611	1/1:54:0,54:0:0:54:1924:-169.506,-16.2556,0	0/1:101:54,47:54:1936:47:1661:-118.27,0,-144.098	0/1:3:1,2:1:36:2:72:-5.91123,0,-2.69518	1/1:110:2,108:2:72:108:3854:-338.531,-26.2766,0	0/1:188:123,65:123:4350:65:2332:-152.371,0,-335.071	0/1:65:39,26:39:1400:26:936:-64.4545,0,-106.732	1/1:43:0,43:0:0:43:1544:-138.019,-12.9443,0	0/1:79:53,26:53:1900:26:936:-60.2965,0,-147.497	0/1:67:53,14:53:1904:14:489:-24.0305,0,-151.469	1/1:28:0,28:0:0:28:993:-89.1952,-8.42884,0	1/1:41:0,41:0:0:41:1457:-128.377,-12.3422,0	1/1:57:0,57:0:0:57:2048:-182.891,-17.1587,0	0/1:15:8,7:8:288:7:207:-14.3594,0,-21.752	1/1:66:1,65:1:36:65:2336:-202.519,-16.2697,0	0/1:78:41,37:41:1468:37:1328:-93.5644,0,-108.936	0/1:53:30,23:30:1068:23:820:-57.4133,0,-80.4775	1/1:95:0,95:0:0:95:3396:-304.148,-28.5979,0	0/1:72:36,36:36:1292:36:1296:-94.2307,0,-94.9096	0/1:79:50,29:50:1796:29:1044:-69.5169,0,-138.141	1/1:7:0,7:0:0:7:237:-21.2294,-2.10721,0	1/1:72:0,72:0:0:72:2577:-229.723,-21.6742,0	1/1:58:0,58:0:0:58:2054:-180.932,-17.4597,0	1/1:110:0,110:0:0:110:3895:-347.333,-33.1133,0	0/1:80:37,43:37:1332:43:1533:-113.455,0,-96.0716	1/1:50:0,50:0:0:50:1784:-160.128,-15.0515,0	1/1:95:0,95:0:0:95:3416:-304.823,-28.5979,0	1/1:125:0,123:0:0:123:4416:-394.108,-37.0267,0	0/1:44:21,23:21:752:23:824:-60.241,0,-54.7609	1/1:58:0,58:0:0:58:2068:-182.217,-17.4597,0	1/1:37:0,37:0:0:37:1332:-118.149,-11.1381,0	0/1:33:14,19:14:504:19:684:-51.5577,0,-35.7641	0/1:74:42,32:42:1512:32:1152:-80.5955,0,-114.098	0/1:42:29,13:29:1044:13:468:-29.6315,0,-81.6315	1/1:21:0,21:0:0:21:752:-67.7816,-6.32163,0	1/1:62:0,62:0:0:62:2227:-199.38,-18.6639,0
chr04	1195106	.	A	G	159622	PASS	AB=0.486684;ABP=10.8176;AC=145;AF=0.771277;AN=188;AO=7605;CIGAR=1X;DP=10218;DPB=10218;DPRA=0;EPP=16508.4;EPPR=5620.69;GTI=2;LEN=1;MEANALT=1.06383;MQM=59.9937;MQMR=60;NS=94;NUMALT=1;ODDS=0.90099;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=271312;QR=93174;RO=2607;RPL=1;RPP=16508.4;RPPR=5620.69;RPR=7604;RUN=1;SAF=0;SAP=16517.1;SAR=7605;SRF=0;SRP=5664.04;SRR=2607;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	1/1:164:0,164:0:0:164:5861:-527.6,-49.3689,0	1/1:94:0,94:0:0:94:3331:-300.008,-28.2968,0	1/1:208:0,208:0:0:208:7393:-665.42,-62.6142,0	1/1:69:0,69:0:0:69:2470:-222.554,-20.7711,0	1/1:57:0,57:0:0:57:2027:-182.702,-17.1587,0	0/1:139:59,80:59:2124:80:2869:-216.603,0,-149.585	1/1:146:1,145:1:36:145:5175:-462.291,-40.3521,0	0/1:96:46,50:46:1633:50:1777:-131.312,0,-118.358	1/1:54:1,53:1:32:53:1900:-168.078,-13.0563,0	1/1:104:0,104:0:0:104:3706:-333.742,-31.3071,0	1/1:88:0,88:0:0:88:3145:-283.275,-26.4906,0	0/1:84:38,46:38:1344:46:1621:-120.889,0,-95.9709	1/1:103:0,103:0:0:103:3651:-328.792,-31.0061,0	0/1:78:39,39:39:1396:39:1395:-102.368,0,-102.459	0/1:55:26,29:26:932:29:1036:-76.9973,0,-67.6422	1/1:105:1,103:1:36:103:3688:-328.524,-28.0687,0	1/1:70:0,70:0:0:70:2488:-224.171,-21.0721,0	0/1:74:44,30:44:1580:30:1047:-72.2603,0,-120.215	0/1:206:92,114:92:3286:114:4082:-305.552,0,-233.947	0/1:144:79,65:79:2828:65:2340:-167.511,0,-211.411	1/1:141:0,141:0:0:141:5020:-451.938,-42.4452,0	0/1:86:37,49:37:1332:49:1739:-130.905,0,-94.2938	1/1:138:1,136:1:36:136:4838:-431.977,-38.0027,0	0/1:57:32,25:32:1152:25:892:-63.441,0,-86.8314	0/1:373:222,151:222:7933:151:5392:-373.126,0,-601.71	0/1:159:76,83:76:2711:83:2943:-217.239,0,-196.37	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	0/1:305:154,151:154:5496:151:5420:-396.114,0,-402.952	1/1:151:0,151:0:0:151:5390:-485.229,-45.4555,0	1/1:108:0,108:0:0:108:3847:-346.424,-32.5112,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:19:8,11:8:284:11:396:-30.2632,0,-20.1838	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:250:1,249:1:36:249:8903:-797.655,-71.6592,0	1/1:270:0,270:0:0:270:9585:-862.61,-81.2781,0	1/1:105:0,105:0:0:105:3755:-338.15,-31.6082,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:134:69,65:69:2480:65:2303:-167.19,0,-183.115	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:106:54,52:54:1916:52:1862:-135.95,0,-140.805	0/1:81:45,36:45:1607:36:1283:-91.3892,0,-120.536	1/1:91:0,91:0:0:91:3276:-295.059,-27.3937,0	0/1:56:30,26:30:1080:26:936:-67.7018,0,-80.6556	1/1:101:0,101:0:0:101:3612:-325.286,-30.404,0	0/1:182:88,94:88:3124:94:3354:-247.289,0,-226.598	0/1:86:38,48:38:1355:48:1711:-128.386,0,-96.3611	0/1:176:67,108:67:2412:108:3868:-295.275,0,-164.296	1/1:127:0,127:0:0:127:4543:-409.036,-38.2308,0	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:143:83,60:83:2972:60:2148:-150.54,0,-224.665	1/1:83:0,83:0:0:83:2940:-264.833,-24.9855,0	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	1/1:125:1,124:1:36:124:4436:-395.811,-34.0305,0	0/1:52:20,32:20:716:32:1129:-86.2628,0,-49.1142	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:18:14,4:14:491:4:135:-7.06397,0,-39.1026	1/1:61:0,61:0:0:61:2169:-195.475,-18.3628,0	0/1:153:63,90:63:2256:90:3204:-242.523,0,-157.245	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	1/1:144:0,144:0:0:144:5163:-464.809,-43.3483,0	0/1:303:156,147:156:5585:147:5276:-383.762,0,-411.559	0/1:86:40,46:40:1440:46:1636:-121.64,0,-104.009	1/1:95:0,95:0:0:95:3394:-305.674,-28.5979,0	0/1:230:115,115:115:4080:115:4115:-301.297,0,-298.15	0/1:133:99,34:99:3552:34:1216:-69.7096,0,-279.851	1/1:48:0,48:0:0:48:1709:-154.094,-14.4494,0	1/1:99:0,99:0:0:99:3514:-316.469,-29.802,0	1/1:87:0,87:0:0:87:3100:-279.155,-26.1896,0	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:49:31,18:31:1092:18:648:-43.9014,0,-83.8364	0/1:319:171,148:171:6125:148:5283:-379.577,0,-455.319	1/1:192:0,192:0:0:192:6833:-615.042,-57.7978,0	0/1:74:46,28:46:1652:28:1000:-68.0392,0,-126.692	0/1:134:68,66:68:2435:66:2352:-171.599,0,-179.067	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:148:0,148:0:0:148:5272:-474.617,-44.5524,0	1/1:128:0,128:0:0:128:4567:-411.194,-38.5318,0	1/1:209:0,208:0:0:208:7447:-669.914,-62.6142,0	0/1:125:64,61:64:2296:61:2170:-157.937,0,-169.272	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:100:0,99:0:0:99:3523:-316.919,-29.802,0	1/1:193:1,192:1:36:192:6848:-612.79,-54.5005,0	0/1:53:26,27:26:927:27:972:-71.8433,0,-67.7928	1/1:117:0,117:0:0:117:4158:-374.402,-35.2205,0	1/1:94:0,94:0:0:94:3340:-300.815,-28.2968,0	0/1:90:28,61:28:996:61:2166:-168.054,0,-62.8035	0/1:273:149,124:149:5300:124:4452:-318.668,0,-394.955	0/1:66:43,23:43:1530:23:801:-52.5382,0,-118.124	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0	1/1:109:0,109:0:0:109:3881:-349.484,-32.8123,0
chr04	1195793	.	ACC	GCT,GCC	335522	PASS	AB=0.541463,0.455401;ABP=122.037,140.725;AC=144,44;AF=0.765957,0.234043;AN=188;AO=12080,3652;CIGAR=1X1M1X,1X2M;DP=15783;DPB=15783;DPRA=0,3.24784;EPP=25862.2,7863.89;EPPR=5.18177;GTI=0;LEN=3,1;MEANALT=2.10638,2.5614;MQM=59.9642,59.9942;MQMR=60;NS=94;NUMALT=2;ODDS=9.36503;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=425341,130005;QR=36;RO=1;RPL=12037,3644;RPP=25862.2,7863.89;RPPR=5.18177;RPR=43,8;RUN=1,1;SAF=0,0;SAP=26234.4,7933.23;SAR=12080,3652;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:60:0,59,1:0:0:59,1:2062,36:-185.488,-17.7608,0,-182.551,-14.4635,-182.25	1/1:44:0,43,1:0:0:43,1:1502,36:-135.099,-12.9443,0,-132.161,-9.64705,-131.86	1/1:98:0,96,0:0:0:96,0:3405,0:-306.409,-28.8989,0,-306.409,-28.8989,-306.409	1/1:132:0,132,0:0:0:132,0:4679,0:-421.273,-39.736,0,-421.273,-39.736,-421.273	1/1:54:0,54,0:0:0:54,0:1891,0:-170.465,-16.2556,0,-170.465,-16.2556,-170.465	1/1:16:0,16,0:0:0:16,0:572,0:-51.8136,-4.81648,0,-51.8136,-4.81648,-51.8136	1/2:32:0,19,13:0:0:19,13:669,454:-91.7429,-37.277,-31.5574,-54.8161,0,-50.9027	1/1:65:0,65,0:0:0:65,0:2314,0:-208.522,-19.567,0,-208.522,-19.567,-208.522	1/2:76:0,32,44:0:0:32,44:1131,1549:-218.565,-126.454,-116.821,-92.4639,0,-79.2185	1/1:50:0,49,0:0:0:49,0:1748,0:-157.391,-14.7505,0,-157.391,-14.7505,-157.391	1/1:219:0,219,0:0:0:219,0:7769,0:-699.249,-65.9256,0,-699.249,-65.9256,-699.249	1/1:93:0,92,0:0:0:92,0:3226,0:-290.22,-27.6948,0,-290.22,-27.6948,-290.22	1/2:55:0,33,22:0:0:33,22:1167,783:-159.219,-64.1703,-54.2363,-95.4032,0,-88.7805	1/1:37:0,37,0:0:0:37,0:1283,0:-115.768,-11.1381,0,-115.768,-11.1381,-115.768	1/2:42:0,25,17:0:0:25,17:884,612:-122.291,-50.2959,-42.7702,-72.3522,0,-67.2346	1/2:77:0,41,36:0:0:41,36:1442,1288:-222.765,-105.387,-93.0443,-117.733,0,-106.896	1/1:17:0,17,0:0:0:17,0:570,0:-51.6154,-5.11751,0,-51.6154,-5.11751,-51.6154	1/1:22:0,22,0:0:0:22,0:789,0:-71.3351,-6.62266,0,-71.3351,-6.62266,-71.3351	1/2:117:0,68,49:0:0:68,49:2412,1733:-338.015,-141.503,-121.032,-196.866,0,-182.116	1/2:124:0,62,62:0:0:62,62:2196,2203:-358.758,-179.871,-161.207,-179.241,0,-160.577	1/2:140:0,69,70:0:0:69,70:2436,2503:-402.607,-204.238,-183.467,-198.51,0,-177.438	1/1:116:0,116,0:0:0:116,0:4093,0:-368.559,-34.9195,0,-368.559,-34.9195,-368.559	1/2:93:0,46,46:0:0:46,46:1626,1648:-266.826,-134.401,-120.554,-132.421,0,-118.573	1/1:22:0,20,2:0:0:20,2:713,63:-64.1785,-6.0206,0,-59.1161,-0.639505,-58.5141	1/2:77:0,46,31:0:0:46,31:1602,1112:-221.324,-91.0594,-77.212,-130.619,0,-121.287	1/2:189:1,96,90:1:36:96,90:3383,3179:-531.181,-256.044,-230.083,-272.592,0,-248.437	1/2:194:0,100,94:0:0:100,94:3448,3350:-553.497,-273.42,-243.317,-280.428,0,-252.131	1/1:22:0,21,0:0:0:21,0:735,0:-66.1882,-6.32163,0,-66.1882,-6.32163,-66.1882	1/2:130:0,74,56:0:0:74,56:2626,1994:-376.831,-162.875,-140.599,-214.312,0,-197.454	1/1:85:0,81,3:0:0:81,3:2868,108:-258.003,-24.3834,0,-249.191,-15.5562,-248.287	1/1:60:0,60,0:0:0:60,0:2083,0:-187.736,-18.0618,0,-187.736,-18.0618,-187.736	1/2:374:0,208,164:0:0:208,164:7345,5851:-1075.15,-477.015,-414.4,-598.175,0,-548.806	1/2:872:0,499,370:0:0:499,370:17470,13187:-2496.34,-1074.94,-924.731,-1421.43,0,-1310.05	1/1:966:0,963,1:0:0:963,1:33831,36:-3043.44,-289.892,0,-3040.5,-286.938,-3040.2	1/1:1342:0,1337,1:0:0:1337,1:46789,36:-4209.14,-402.477,0,-4206.2,-399.524,-4205.9	1/2:960:0,511,447:0:0:511,447:18053,15943:-2769.98,-1299.76,-1145.94,-1470.33,0,-1335.77	1/1:151:0,146,5:0:0:146,5:5186,176:-466.529,-43.9504,0,-452.201,-29.2705,-450.696	1/1:101:0,100,0:0:0:100,0:3527,0:-317.434,-30.103,0,-317.434,-30.103,-317.434	1/1:222:0,220,0:0:0:220,0:7775,0:-699.477,-66.2266,0,-699.477,-66.2266,-699.477	1/2:359:0,202,157:0:0:202,157:7169,5576:-1038.81,-454.703,-393.895,-584.463,0,-537.202	1/2:55:0,32,23:0:0:32,23:1143,828:-161.085,-67.9204,-58.2875,-93.5231,0,-86.5994	1/1:114:0,114,0:0:0:114,0:3990,0:-359.294,-34.3174,0,-359.294,-34.3174,-359.294	1/2:110:0,65,45:0:0:65,45:2250,1591:-312.55,-129.933,-110.366,-182.967,0,-169.421	1/2:28:0,17,11:0:0:17,11:583,396:-79.9912,-32.6714,-27.5539,-47.673,0,-44.3616	1/1:34:0,33,0:0:0:33,0:1132,0:-101.967,-9.93399,0,-101.967,-9.93399,-101.967	1/2:82:0,47,35:0:0:47,35:1620,1260:-234.75,-103.169,-89.021,-131.934,0,-121.398	1/1:46:0,46,0:0:0:46,0:1631,0:-147.078,-13.8474,0,-147.078,-13.8474,-147.078	1/2:75:0,35,40:0:0:35,40:1222,1440:-217.249,-117.857,-107.32,-99.7462,0,-87.705	1/2:62:0,39,23:0:0:39,23:1380,824:-179.961,-67.5596,-55.8195,-112.757,0,-105.834	1/2:57:0,32,24:0:0:32,24:1122,860:-161.514,-70.214,-60.5811,-91.3709,0,-84.1462	1/1:92:0,91,1:0:0:91,1:3201,36:-287.955,-27.3937,0,-285.017,-24.0965,-284.716	1/2:546:0,307,234:0:0:307,234:10816,8359:-1562.14,-681.549,-589.132,-880.613,0,-810.172	1/2:81:0,31,50:0:0:31,50:1083,1792:-234.603,-146.511,-137.179,-88.4444,0,-73.3929	1/1:31:0,30,0:0:0:30,0:1034,0:-93.0035,-9.0309,0,-93.0035,-9.0309,-93.0035	1/1:399:0,398,1:0:0:398,1:13872,36:-1247.88,-119.81,0,-1244.94,-116.513,-1244.64	1/1:92:0,91,0:0:0:91,0:3193,0:-287.385,-27.3937,0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chr04	1204306	.	ATA	GTG,GTA	269096	PASS	AB=0.501824,0.495025;ABP=3.18459,4.3067;AC=143,45;AF=0.760638,0.239362;AN=188;AO=9933,3015;CIGAR=1X1M1X,1X2M;DP=12992;DPB=12994;DPRA=34.914,1.18979;EPP=21572.2,6550;EPPR=0;GTI=1;LEN=3,1;MEANALT=2.02151,2.40741;MQM=59.0171,59.1645;MQMR=0;NS=94;NUMALT=2;ODDS=0.791683;PAIRED=0,0;PAIREDR=0;PAO=3,3;PQA=98,98;PQR=0;PRO=0;QA=344200,106559;QR=0;RO=0;RPL=9933,3015;RPP=21572.2,6550;RPPR=0;RPR=0,0;RUN=1,1;SAF=9933,3015;SAP=21572.2,6550;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53,0:0:0:53,0:1820,0:-164.003,-15.9546,0,-164.003,-15.9546,-164.003	1/1:282:0,280,1:0:0:280,1:9730,36:-874.943,-84.2884,0,-872.006,-81.351,-871.705	1/1:212:0,211,0:0:0:211,0:7316,0:-656.92,-63.5173,0,-656.92,-63.5173,-656.92	1/1:278:0,277,1:0:0:277,1:9627,36:-865.759,-83.3853,0,-862.822,-80.0881,-862.521	1/1:131:0,130,0:0:0:130,0:4479,0:-402.773,-39.1339,0,-402.773,-39.1339,-402.773	1/1:92:0,90,2:0:0:90,2:3169,72:-284.175,-27.0927,0,-278.309,-20.8666,-277.707	1/2:182:0,88,94:0:0:88,94:3083,3350:-523.951,-273.215,-246.724,-251.089,0,-222.792	1/1:332:0,330,1:0:0:330,1:11463,36:-1030.66,-99.3399,0,-1027.72,-96.3216,-1027.42	1/2:81:0,48,32:0:0:48,32:1627,1129:-223.667,-91.7955,-77.346,-132.002,0,-122.369	1/1:135:0,134,0:0:0:134,0:4681,0:-419.847,-40.338,0,-419.847,-40.338,-419.847	1/1:96:0,96,0:0:0:96,0:3313,0:-298.055,-28.8989,0,-298.055,-28.8989,-298.055	1/1:66:0,66,0:0:0:66,0:2246,0:-202.363,-19.868,0,-202.363,-19.868,-202.363	1/2:84:0,32,52:0:0:32,52:1111,1835:-240.03,-149.725,-140.092,-90.654,0,-75.0004	1/1:97:0,96,0:0:0:96,0:3321,0:-298.554,-28.8989,0,-298.554,-28.8989,-298.554	1/2:62:0,27,35:0:0:27,35:946,1233:-177.615,-100.642,-92.5137,-77.3248,0,-66.7888	1/2:66:0,29,37:0:0:29,37:977,1295:-184.809,-105.649,-96.919,-79.5021,0,-68.364	1/1:88:0,88,0:0:0:88,0:3075,0:-276.961,-26.4906,0,-276.961,-26.4906,-276.961	1/1:89:0,89,0:0:0:89,0:3111,0:-279.935,-26.7917,0,-279.935,-26.7917,-279.935	1/2:51:0,22,29:0:0:22,29:737,1018:-142.509,-83.1556,-76.533,-59.6944,0,-50.9645	1/2:368:0,192,174:0:0:192,174:6630,6205:-1043.02,-504.967,-447.17,-538.15,0,-485.771	1/2:182:0,91,90:0:0:91,90:3121,3158:-509.752,-256.765,-229.371,-253.064,0,-225.972	1/1:123:0,122,0:0:0:122,0:4183,0:-376.273,-36.7257,0,-376.273,-36.7257,-376.273	1/2:53:0,29,24:0:0:29,24:1016,860:-153.067,-70.4452,-61.7153,-82.9757,0,-75.751	1/1:111:0,102,9:0:0:102,9:3487,324:-313.608,-30.7051,0,-287.198,-3.93714,-284.488	1/2:94:0,47,47:0:0:47,47:1636,1660:-268.475,-135.537,-121.389,-133.288,0,-119.14	1/2:415:0,210,204:0:0:210,204:7292,7202:-1179.31,-586.54,-523.324,-592.879,0,-531.469	1/2:249:0,122,127:0:0:122,127:4185,4467:-703.017,-363.303,-326.578,-340.061,0,-301.83	1/1:44:0,44,0:0:0:44,0:1488,0:-134.011,-13.2453,0,-134.011,-13.2453,-134.011	1/2:380:0,218,161:0:0:218,161:7521,5688:-1073.91,-462.956,-397.331,-611.04,0,-562.574	1/1:278:0,270,7:0:0:270,7:9412,238:-846.011,-81.2781,0,-827.006,-62.1983,-824.899	1/1:188:0,188,0:0:0:188,0:6485,0:-583.222,-56.5936,0,-583.222,-56.5936,-583.222	1/2:5:0,3,2:0:0:3,2:98,72:-14.1288,-6.23466,-5.33157,-8.24069,0,-7.63863	1/2:13:0,6,7:0:0:6,7:201,248:-36.8241,-20.557,-18.7508,-16.6108,0,-14.5036	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:9:0,9,0:0:0:9,0:303,0:-27.5925,-2.70927,0,-27.5925,-2.70927,-27.5925	1/2:11:0,6,5:0:0:6,5:210,176:-31.7562,-14.6799,-12.8737,-17.4272,0,-15.9221	1/1:209:0,207,0:0:0:207,0:7069,0:-635.328,-62.3132,0,-635.328,-62.3132,-635.328	1/1:182:0,182,0:0:0:182,0:6351,0:-571.336,-54.7875,0,-571.336,-54.7875,-571.336	1/1:87:0,86,0:0:0:86,0:2968,0:-266.924,-25.8886,0,-266.924,-25.8886,-266.924	1/2:4:0,3,1:0:0:3,1:89,36:-10.3543,-3.29724,-2.39415,-7.40112,0,-7.10009	1/2:244:0,131,113:0:0:131,113:4583,3950:-694.159,-321.418,-281.983,-373.09,0,-339.073	1/1:49:0,49,0:0:0:49,0:1701,0:-153.261,-14.7505,0,-153.261,-14.7505,-153.261	1/2:225:0,108,117:0:0:108,117:3746,4150:-642.153,-338.313,-305.802,-304.19,0,-268.97	1/2:61:0,27,34:0:0:27,34:924,1216:-174.374,-99.4831,-91.3553,-75.2392,0,-65.0042	1/1:49:0,48,1:0:0:48,1:1667,27:-150.013,-14.4494,0,-147.886,-12.0507,-147.585	1/2:94:0,58,36:0:0:58,36:1982,1284:-265.784,-104.996,-87.5364,-161.138,0,-150.301	1/1:206:0,206,0:0:0:206,0:7118,0:-639.28,-62.0122,0,-639.28,-62.0122,-639.28	1/2:216:0,115,101:0:0:115,101:4047,3534:-616.598,-287.652,-253.034,-329.296,0,-298.892	1/2:154:0,86,67:0:0:86,67:2988,2349:-433.782,-191.073,-165.184,-242.845,0,-222.676	1/2:255:0,136,117:0:0:136,117:4807,4164:-730.157,-339.214,-298.274,-390.938,0,-355.717	1/1:221:0,218,0:0:0:218,0:7481,0:-672.711,-65.6245,0,-672.711,-65.6245,-672.711	1/2:17:0,8,9:0:0:8,9:283,320:-49.4532,-26.4035,-23.9953,-23.404,0,-20.6947	1/2:250:0,117,132:0:0:117,132:3995,4693:-706.443,-382.535,-347.315,-324.044,0,-284.308	1/1:107:0,105,0:0:0:105,0:3665,0:-329.668,-31.6082,0,-329.668,-31.6082,-329.668	1/1:11:0,11,0:0:0:11,0:391,0:-35.5296,-3.31133,0,-35.5296,-3.31133,-35.5296	1/1:197:0,197,0:0:0:197,0:6864,0:-617.466,-59.3029,0,-617.466,-59.3029,-617.466	1/2:24:0,12,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chr04	1204313	.	C	G	52385.6	PASS	AB=0.525479;ABP=35.9849;AC=45;AF=0.239362;AN=188;AO=3103;CIGAR=1X;DP=12224;DPB=12224;DPRA=1.29382;EPP=6741.09;EPPR=19780.8;GTI=2;LEN=1;MEANALT=1.15094;MQM=59.0664;MQMR=59.1146;NS=94;NUMALT=1;ODDS=1.65761;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110353;QR=318043;RO=9108;RPL=3103;RPP=6741.09;RPPR=19780.8;RPR=0;RUN=1;SAF=3103;SAP=6741.09;SAR=0;SRF=9108;SRP=19780.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:48,0:48:1668:0:0:0,-14.4494,-150.123	0/0:257:255,1:255:8995:1:36:0,-73.8147,-805.742	0/0:194:194,0:194:6854:0:0:0,-58.3998,-614.906	0/0:259:258,1:258:9118:1:36:0,-74.3685,-816.77	0/0:121:121,0:121:4233:0:0:0,-36.4246,-380.873	0/0:87:86,1:86:2995:1:36:0,-22.6004,-265.932	0/1:183:83,99:83:2924:99:3564:-264.792,0,-208.021	0/0:297:294,2:294:10286:2:59:0,-84.119,-919.853	0/1:76:44,32:44:1551:32:1141:-79.7726,0,-116.943	0/0:121:121,0:121:4239:0:0:0,-36.4246,-381.44	0/0:85:85,0:85:2897:0:0:0,-25.5875,-260.777	0/0:58:58,0:58:1995:0:0:0,-17.4597,-179.797	0/1:83:30,53:30:1032:53:1865:-143.093,0,-68.1918	0/0:93:93,0:93:3161:0:0:0,-27.9958,-284.351	0/1:61:27,34:27:909:34:1215:-91.2856,0,-63.7515	0/1:64:27,37:27:905:37:1298:-97.8051,0,-62.4444	0/0:77:77,0:77:2613:0:0:0,-23.1793,-235.399	0/0:83:83,0:83:2828:0:0:0,-24.9855,-254.672	0/1:50:20,29:20:687:29:1040:-78.8802,0,-47.1572	0/1:357:180,177:180:6324:177:6334:-461.359,0,-460.47	0/1:175:80,94:80:2787:94:3300:-243.741,0,-197.881	0/0:107:107,0:107:3742:0:0:0,-32.2102,-336.964	0/1:51:26,25:26:915:25:892:-65.1943,0,-67.313	0/0:106:97,9:97:3415:9:324:0,-2.43199,-277.925	0/1:93:45,48:45:1587:48:1712:-126.368,0,-115.01	0/1:395:185,210:185:6518:210:7463:-552.772,0,-467.778	0/1:244:111,133:111:3960:133:4726:-351.364,0,-282.648	0/0:39:39,0:39:1294:0:0:0,-11.7402,-116.334	0/1:371:203,167:203:7130:167:5931:-422.036,0,-529.921	0/0:267:259,8:259:9165:8:280:0,-55.2416,-798.054	0/0:178:178,0:178:6248:0:0:0,-53.5833,-561.885	0/1:4:2,2:2:57:2:72:-5.6326,0,-4.20919	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2628	0/1:10:6,4:6:207:4:144:-10.3033,0,-15.9483	0/0:184:184,0:184:6247:0:0:0,-55.3895,-561.29	0/0:163:163,0:163:5799:0:0:0,-49.0679,-521.716	0/0:76:76,0:76:2569:0:0:0,-22.8783,-231.412	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:230:118,112:118:4156:112:3984:-289.252,0,-304.888	0/0:41:41,0:41:1401:0:0:0,-12.3422,-126.285	0/1:216:95,121:95:3317:121:4325:-323.831,0,-233.228	0/1:60:27,33:27:907:33:1184:-88.7781,0,-63.7273	0/0:41:41,0:41:1392:0:0:0,-12.3422,-125.541	0/1:90:53,37:53:1865:37:1319:-91.8873,0,-140.974	0/0:189:187,0:187:6534:0:0:0,-56.2926,-585.872	0/1:218:113,105:113:3966:105:3748:-271.781,0,-291.023	0/1:140:72,68:72:2531:68:2419:-175.674,0,-185.717	0/1:248:128,119:128:4567:119:4227:-305.79,0,-336.016	0/0:200:200,0:200:7046:0:0:0,-60.206,-633.799	0/1:18:8,10:8:288:10:356:-26.9332,0,-20.8489	0/1:237:105,131:105:3643:131:4685:-350.469,0,-256.701	0/0:100:100,0:100:3547:0:0:0,-30.103,-319.251	0/0:11:11,0:11:378:0:0:0,-3.31133,-34.3491	0/0:183:183,0:183:6412:0:0:0,-55.0885,-576.011	0/1:23:11,12:11:378:12:432:-32.2893,0,-27.4208	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:35:19,16:19:664:16:562:-40.3336,0,-49.5475	0/0:137:137,0:137:4787:0:0:0,-41.2411,-430.535	0/1:149:66,83:66:2264:83:2952:-220.553,0,-159.084	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:301:300,0:300:10487:0:0:0,-90.309,-943.307	0/1:308:155,153:155:5442:153:5448:-396.584,0,-396.931	0/1:88:48,40:48:1694:40:1436:-103,0,-126.168	0/0:106:105,1:105:3714:1:36:0,-28.3109,-330.53	0/1:156:76,80:76:2642:80:2844:-209.078,0,-190.539	0/1:248:85,163:85:2984:163:5801:-447.191,0,-193.965	0/0:35:34,1:34:1121:1:34:0,-7.15728,-97.712	0/0:120:120,0:120:4269:0:0:0,-36.1236,-384.284	0/0:112:112,0:112:3901:0:0:0,-33.7154,-351.275	0/1:28:6,22:6:216:22:778:-61.8136,0,-11.3617	0/0:90:90,0:90:3154:0:0:0,-27.0927,-283.856	0/1:105:42,63:42:1465:63:2225:-168.523,0,-100.439	0/1:239:111,128:111:3857:128:4536:-336.3,0,-273.914	0/0:216:214,0:214:7453:0:0:0,-64.4204,-669.306	0/1:140:76,64:76:2708:64:2275:-162.838,0,-201.476	0/1:177:68,109:68:2389:109:3857:-293.924,0,-161.682	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:212:212,0:212:7461:0:0:0,-63.8184,-670.862	0/0:196:196,0:196:6773:0:0:0,-59.0019,-609.324	0/0:384:382,2:382:13445:2:72:0,-108.759,-1201.44	0/1:170:87,83:87:2988:83:2948:-213.937,0,-217.483	0/0:87:87,0:87:2982:0:0:0,-26.1896,-268.519	0/0:88:88,0:88:2931:0:0:0,-26.4906,-263.927	0/0:144:144,0:144:5034:0:0:0,-43.3483,-452.781	0/1:57:32,25:32:1102:25:873:-61.7128,0,-82.0975	0/0:78:78,0:78:2684:0:0:0,-23.4803,-240.851	0/0:67:67,0:67:2289:0:0:0,-20.169,-205.961	0/1:67:29,38:29:983:38:1351:-101.66,0,-68.5716	0/1:99:43,56:43:1450:56:1988:-149.34,0,-100.789	0/1:70:20,50:20:676:50:1762:-137.305,0,-40.0538	0/0:182:182,0:182:6337:0:0:0,-54.7875,-570.158	0/0:129:129,0:129:4439:0:0:0,-38.8329,-399.392
chr04	1204372	.	C	T	171652	PASS	AB=0.464885;ABP=62.3332;AC=144;AF=0.765957;AN=188;AO=8181;CIGAR=1X;DP=11161;DPB=11161;DPRA=120;EPP=17767.8;EPPR=6467.48;GTI=3;LEN=1;MEANALT=1.03226;MQM=59.8814;MQMR=59.9738;NS=94;NUMALT=1;ODDS=0.408526;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=292418;QR=106238;RO=2977;RPL=8181;RPP=17767.8;RPPR=6467.48;RPR=0;RUN=1;SAF=0;SAP=17767.8;SAR=8181;SRF=0;SRP=6467.48;SRR=2977;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1180:-106.507,-9.93399,0	1/1:126:0,126:0:0:126:4520:-406.907,-37.9298,0	1/1:218:0,218:0:0:218:7785:-700.668,-65.6245,0	1/1:317:1,316:1:36:316:11273:-1010.82,-91.8282,0	1/1:72:1,71:1:36:71:2514:-222.911,-18.0759,0	1/1:77:0,77:0:0:77:2745:-247.288,-23.1793,0	0/1:173:112,61:112:4020:61:2173:-143.437,0,-309.909	1/1:131:0,131:0:0:131:4680:-421.361,-39.4349,0	0/1:144:89,55:89:3162:55:1972:-134.407,0,-241.454	1/1:112:0,112:0:0:112:4013:-361.357,-33.7154,0	1/1:72:0,72:0:0:72:2592:-233.403,-21.6742,0	1/1:101:0,101:0:0:101:3601:-324.259,-30.404,0	0/1:107:51,56:51:1836:56:2016:-149.502,0,-133.254	1/1:104:0,104:0:0:104:3736:-336.439,-31.3071,0	0/1:116:64,52:64:2281:52:1872:-133.84,0,-170.631	0/1:83:41,42:41:1452:42:1504:-110.669,0,-105.988	1/1:103:0,103:0:0:103:3677:-331.131,-31.0061,0	1/1:86:0,86:0:0:86:3077:-277.136,-25.8886,0	0/1:54:33,21:33:1179:21:756:-52.1116,0,-90.1616	0/1:257:128,129:128:4577:129:4613:-337.968,0,-334.612	0/1:173:96,77:96:3398:77:2753:-195.921,0,-253.956	1/1:119:0,119:0:0:119:4264:-383.924,-35.8226,0	0/1:95:47,48:47:1661:48:1708:-125.204,0,-121.178	1/1:50:2,48:2:72:48:1716:-147.442,-8.21478,0	0/1:73:48,25:48:1701:25:891:-58.5308,0,-131.399	0/1:438:227,211:227:8102:211:7525:-545.404,0,-597.346	0/1:300:157,143:157:5640:143:5117:-370.35,0,-417.409	1/1:56:0,56:0:0:56:2012:-180.925,-16.8577,0	0/1:305:186,119:186:6665:119:4264:-292.124,0,-508.11	1/1:154:5,149:5:180:149:5309:-461.389,-29.8066,0	1/1:160:0,160:0:0:160:5671:-510.483,-48.1648,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:8:3,5:3:108:5:172:-13.4097,0,-7.66693	1/1:263:0,263:0:0:263:9397:-845.68,-79.1709,0	1/1:134:0,133:0:0:133:4764:-428.54,-40.037,0	1/1:70:0,70:0:0:70:2520:-227.05,-21.0721,0	1/1:1:0,1:0:0:1:21:-2.09995,-0.30103,0	0/1:227:119,108:119:4215:108:3860:-279.262,0,-311.194	1/1:49:0,49:0:0:49:1764:-159.043,-14.7505,0	0/1:103:66,37:66:2368:37:1332:-89.1763,0,-182.372	0/1:120:61,59:61:2173:59:2120:-154.943,0,-159.711	1/1:75:0,75:0:0:75:2700:-243.237,-22.5773,0	0/1:112:46,66:46:1637:66:2364:-179.303,0,-113.901	1/1:147:0,147:0:0:147:5248:-472.416,-44.2514,0	0/1:188:88,100:88:3145:100:3569:-264.809,0,-226.68	0/1:193:104,89:104:3729:89:3173:-227.694,0,-277.71	0/1:210:106,104:106:3761:104:3713:-271.154,0,-275.46	1/1:148:0,148:0:0:148:5277:-475.031,-44.5524,0	0/1:11:1,10:1:36:10:360:-29.4104,0,-0.286945	0/1:169:94,75:94:3353:75:2680:-190.57,0,-251.112	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:12:0,12:0:0:12:417:-37.8563,-3.61236,0	1/1:157:0,156:0:0:156:5554:-499.592,-46.9607,0	0/1:75:36,39:36:1277:39:1388:-102.619,0,-92.6539	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:94:0,94:0:0:94:3344:-301.178,-28.2968,0	0/1:167:94,73:94:3363:73:2624:-186.135,0,-252.614	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:221:2,219:2:72:219:7844:-699.151,-59.6909,0	0/1:249:113,136:113:4022:136:4841:-360.833,0,-287.211	0/1:81:35,46:35:1252:46:1633:-122.851,0,-88.6016	1/1:136:0,136:0:0:136:4884:-439.683,-40.9401,0	0/1:138:76,62:76:2705:62:2223:-158.522,0,-202.151	0/1:104:77,27:77:2741:27:968:-56.1302,0,-215.623	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:56:1,55:1:36:55:1956:-172.717,-13.2594,0	1/1:113:0,113:0:0:113:4048:-364.506,-34.0164,0	0/1:15:8,7:8:269:7:252:-18.5135,0,-20.0207	1/1:104:0,104:0:0:104:3728:-335.721,-31.3071,0	0/1:107:45,62:45:1597:62:2185:-163.342,0,-111.808	0/1:188:91,97:91:3241:97:3461:-255.105,0,-235.317	1/1:144:0,144:0:0:144:5123:-461.203,-43.3483,0	0/1:148:72,76:72:2588:76:2713:-199.86,0,-188.615	0/1:145:89,56:89:3165:56:2004:-136.981,0,-241.424	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:132:0,132:0:0:132:4698:-422.979,-39.736,0	1/1:154:0,154:0:0:154:5505:-495.517,-46.3586,0	1/1:293:0,293:0:0:293:10482:-943.238,-88.2018,0	0/1:133:76,57:76:2732:57:2048:-144.555,0,-206.085	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	1/1:115:0,115:0:0:115:4128:-371.476,-34.6185,0	1/1:182:1,181:1:36:181:6466:-578.412,-51.1892,0	0/1:56:31,25:31:1108:25:892:-63.742,0,-83.1733	1/1:115:0,115:0:0:115:4112:-370.25,-34.6185,0	1/1:105:0,105:0:0:105:3780:-340.396,-31.6082,0	0/1:58:39,19:39:1400:19:684:-44.4306,0,-108.839	0/1:100:47,53:47:1676:53:1892:-140.455,0,-121.024	0/1:89:59,29:59:2111:29:1040:-67.0456,0,-163.408	1/1:155:0,155:0:0:155:5522:-497.075,-46.6597,0	1/1:165:0,165:0:0:165:5924:-533.212,-49.67,0
chr04	1225037	.	G	A	22446.7	PASS	AB=0.482193;ABP=10.8986;AC=43;AF=0.228723;AN=188;AO=1386;CIGAR=1X;DP=6384;DPB=6384;DPRA=0.970296;EPP=3012.67;EPPR=10832.2;GTI=0;LEN=1;MEANALT=1.02174;MQM=55.8745;MQMR=59.9347;NS=94;NUMALT=1;ODDS=0.269211;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49282;QR=178811;RO=4995;RPL=0;RPP=3012.67;RPPR=10849.5;RPR=1386;RUN=1;SAF=1386;SAP=3012.67;SAR=0;SRF=4993;SRP=10832.2;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:3,12:3:108:12:428:-34.2724,0,-5.55972	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.537	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.847	0/0:114:114,0:114:4077:0:0:0,-34.3174,-366.957	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:98:52,46:52:1852:46:1629:-117.355,0,-137.459	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.72	0/1:32:17,15:17:608:15:540:-39.1969,0,-45.4191	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.05	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:52:36,16:36:1292:16:557:-34.4901,0,-100.93	0/0:94:93,0:93:3332:0:0:0,-27.9958,-299.738	0/1:43:27,16:27:968:16:576:-38.8979,0,-74.4793	0/1:54:34,20:34:1224:20:712:-47.8733,0,-94.2114	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.878	0/1:74:34,40:34:1212:40:1436:-106.277,0,-87.1101	0/1:144:78,66:78:2804:66:2368:-169.8,0,-209.251	0/1:86:44,42:44:1580:42:1508:-109.944,0,-116.603	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.894	0/1:8:5,3:5:180:3:108:-7.66411,0,-14.1438	0/0:48:46,2:46:1640:2:72:0,-7.61765,-141.057	0/1:36:21,15:21:756:15:532:-37.3291,0,-57.5301	0/1:165:85,80:85:3040:80:2830:-204.787,0,-224.002	0/1:153:82,71:82:2952:71:2544:-182.153,0,-219.855	0/0:36:36,0:36:1278:0:0:0,-10.8371,-115.322	0/1:224:83,141:83:2965:141:4979:-380.053,0,-199.545	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.214	0/1:13:8,5:8:288:5:176:-12.2572,0,-22.354	0/1:24:14,10:14:500:10:360:-25.4882,0,-38.1099	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:12:8,4:8:288:4:144:-9.44902,0,-22.655	0/0:150:150,0:150:5375:0:0:0,-45.1545,-483.876	0/0:136:136,0:136:4852:0:0:0,-40.9401,-436.833	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.53	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:90:45,45:45:1608:45:1612:-117.655,0,-117.917	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:84:31,53:31:1116:53:1858:-141.313,0,-75.4652	0/1:44:28,16:28:1004:16:572:-38.555,0,-77.4305	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:42:33,9:33:1176:9:324:-16.8626,0,-93.5045	0/0:66:64,2:64:2269:2:64:0,-13.7962,-198.399	0/1:106:46,60:46:1648:60:2110:-157.674,0,-116.699	0/1:41:21,20:21:756:20:720:-52.4506,0,-56.0168	0/1:93:40,53:40:1425:53:1892:-142.175,0,-100.55	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.566	0/1:10:5,5:5:180:5:180:-13.5371,0,-13.5418	0/1:86:36,50:36:1284:50:1796:-135.602,0,-89.9748	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:105:104,0:104:3709:0:0:0,-31.3071,-333.651	0/1:21:14,7:14:500:7:237:-15.3288,0,-39.0145	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:10:8,2:8:280:2:72:-3.82642,0,-22.529	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:108:64,44:64:2296:44:1576:-109.324,0,-174.39	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:129:129,0:129:4594:0:0:0,-38.8329,-413.623	0/1:101:66,35:66:2372:35:1248:-82.1795,0,-183.334	0/1:46:20,26:20:712:26:932:-70.1412,0,-50.5593	0/0:105:105,0:105:3749:0:0:0,-31.6081,-337.601	0/1:83:53,30:53:1885:30:1068:-71.1656,0,-144.927	0/1:59:15,44:15:540:44:1563:-122.87,0,-31.1758	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.281	0/0:98:97,1:97:3488:1:36:0,-25.9027,-310.531	0/1:12:7,5:7:252:5:165:-11.5575,0,-19.4166	0/0:89:89,0:89:3143:0:0:0,-26.7917,-283.093	0/1:42:21,21:21:737:21:737:-53.6448,0,-53.9897	0/1:55:37,18:37:1328:18:632:-40.5546,0,-103.263	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.427	0/1:33:25,8:25:900:8:288:-16.2834,0,-71.387	0/1:49:24,24:24:856:24:856:-62.4196,0,-62.5922	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.337	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/0:143:143,0:143:5113:0:0:0,-43.0473,-460.305	0/1:81:44,37:44:1580:37:1328:-95.4043,0,-118.108	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:123:123,0:123:4398:0:0:0,-37.0267,-395.978	0/1:13:6,7:6:216:7:244:-18.3473,0,-15.8771	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.919	0/1:72:46,26:46:1647:26:920:-61.3609,0,-126.844	0/1:159:82,77:82:2936:77:2744:-197.983,0,-216.611	0/1:91:34,57:34:1216:57:2009:-153.547,0,-82.232	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82
chr04	1232181	.	C	T	83165.2	PASS	AB=0.523387;ABP=39.9817;AC=96;AF=0.510638;AN=188;AO=4084;CIGAR=1X;DP=7794;DPB=7794;DPRA=0;EPP=2557.77;EPPR=8028.78;GTI=4;LEN=1;MEANALT=1.06383;MQM=40.2292;MQMR=29.5202;NS=94;NUMALT=1;ODDS=0.320538;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145848;QR=132088;RO=3704;RPL=946;RPP=2557.77;RPPR=8028.78;RPR=3138;RUN=1;SAF=4084;SAP=8871.3;SAR=0;SRF=3704;SRP=8046.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:16,32:16:567:32:1148:-83.1149,0,-23.5648	0/1:108:71,37:71:2517:37:1332:-79.1381,0,-135.55	0/1:121:63,58:63:2247:58:2063:-136.241,0,-112.01	0/1:157:85,72:85:3030:72:2576:-177.013,0,-176.496	0/1:57:41,16:41:1443:16:576:-31.866,0,-85.9649	0/1:50:28,22:28:1004:22:776:-49.7038,0,-51.8969	0/1:130:55,75:55:1968:75:2670:-193.364,0,-105.509	0/1:117:71,46:71:2488:46:1644:-103.601,0,-132.055	0/1:84:21,63:21:756:63:2263:-162.088,0,-25.0369	0/1:80:31,49:31:1090:49:1752:-128.55,0,-56.0034	0/1:69:29,40:29:1035:40:1432:-103.005,0,-55.4978	0/1:91:45,46:45:1612:46:1632:-108.633,0,-79.4334	0/1:64:25,39:25:888:39:1404:-96.9619,0,-39.8437	0/1:85:42,43:42:1504:43:1530:-105.358,0,-80.3034	0/1:49:18,31:18:648:31:1101:-81.8598,0,-33.5466	0/1:38:9,29:9:324:29:1031:-77.3707,0,-11.1288	0/1:62:35,27:35:1251:27:959:-61.0365,0,-63.8945	0/1:52:21,31:21:747:31:1101:-75.0999,0,-33.6835	0/1:25:7,18:7:252:18:648:-46.5214,0,-9.42529	0/1:175:76,99:76:2716:99:3531:-253.484,0,-147.033	0/1:123:52,71:52:1850:71:2514:-178.883,0,-94.2738	0/1:113:50,63:50:1792:63:2239:-163.263,0,-103.866	0/1:75:25,50:25:896:50:1788:-132.539,0,-43.7791	0/1:100:62,38:62:2199:38:1349:-86.808,0,-125.821	0/1:71:29,42:29:1027:42:1499:-106.834,0,-51.9068	0/1:128:69,59:69:2468:59:2110:-147.934,0,-151.561	0/1:146:51,95:51:1804:95:3391:-246.458,0,-84.4801	0/1:19:16,3:16:576:3:108:-3.953,0,-35.0298	0/1:206:77,128:77:2731:128:4559:-338.538,0,-150.193	0/1:129:81,48:81:2900:48:1720:-108.876,0,-165.664	0/1:117:94,22:94:3352:22:792:-33.2587,0,-211.77	0/1:9:6,3:6:216:3:108:-6.9633,0,-12.482	0/1:10:2,8:2:72:8:288:-21.552,0,-2.34975	0/1:8:5,3:5:180:3:104:-6.81116,0,-9.77532	0/1:7:2,5:2:72:5:176:-12.3696,0,-2.92513	0/1:6:4,2:4:144:2:72:-4.63026,0,-7.99364	0/1:172:71,101:71:2531:101:3622:-265.582,0,-144.157	0/1:199:99,100:99:3552:100:3592:-247.162,0,-190.257	0/1:63:34,29:34:1212:29:1007:-66.1387,0,-61.1537	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	0/1:90:53,37:53:1908:37:1324:-87.6522,0,-107.989	0/1:26:15,11:15:540:11:381:-23.5229,0,-30.1341	0/1:113:43,69:43:1548:69:2461:-174.773,0,-75.0873	0/1:50:11,39:11:396:39:1400:-106.85,0,-14.756	0/1:57:25,32:25:892:32:1130:-81.4387,0,-49.3878	0/1:103:31,72:31:1116:72:2578:-195.557,0,-55.9982	0/1:106:53,53:53:1891:53:1879:-127.025,0,-94.1831	0/1:81:47,34:47:1680:34:1220:-81.9987,0,-98.8092	0/1:101:26,75:26:919:75:2691:-202.589,0,-38.8107	0/1:86:32,54:32:1140:54:1923:-140.086,0,-58.5963	0/1:213:108,104:108:3837:104:3723:-264.326,0,-236.552	0/1:7:2,5:2:72:5:180:-14.0052,0,-3.55622	0/1:76:27,49:27:959:49:1752:-122.702,0,-40.3696	0/1:65:39,26:39:1396:26:932:-63.0722,0,-87.2604	0/1:24:18,6:18:644:6:216:-11.5919,0,-35.8861	0/1:78:55,23:55:1951:23:816:-47.4489,0,-115.25	0/1:62:13,49:13:468:49:1760:-133.944,0,-16.509	0/1:6:3,3:3:108:3:100:-6.60217,0,-6.94001	1/1:11:1,10:1:36:10:360:-29.0551,-0.187692,0	0/1:105:49,56:49:1739:56:2000:-140.279,0,-91.2066	0/1:126:36,90:36:1279:90:3232:-244.737,0,-57.0411	0/1:8:2,6:2:72:6:216:-16.3067,0,-3.25519	0/1:156:94,62:94:3337:62:2191:-144.806,0,-211.467	0/1:149:56,93:56:2012:93:3336:-244.309,0,-104.317	0/1:43:25,18:25:887:18:648:-43.3639,0,-50.423	0/1:86:49,37:49:1747:37:1328:-89.4966,0,-103.959	0/1:133:56,77:56:1989:77:2761:-198.967,0,-109.704	0/1:106:22,84:22:788:84:2998:-229.215,0,-26.1005	0/1:30:22,8:22:788:8:288:-15.5314,0,-47.6172	0/1:123:63,60:63:2234:60:2144:-140.713,0,-111.872	0/1:103:53,50:53:1896:50:1776:-125.075,0,-116.069	0/1:8:4,4:4:144:4:144:-10.5517,0,-8.62054	0/1:191:99,92:99:3528:92:3285:-217.009,0,-176.421	0/1:36:19,17:19:676:17:600:-40.0144,0,-34.5962	0/1:150:54,96:54:1936:96:3432:-249.086,0,-91.7455	0/1:157:82,75:82:2923:75:2688:-186.69,0,-168.456	0/1:62:24,38:24:860:38:1352:-94.1448,0,-38.421	0/1:53:12,41:12:428:41:1461:-107.088,0,-13.1792	0/1:18:11,7:11:396:7:252:-15.8188,0,-20.9023	0/1:84:43,41:43:1527:41:1461:-100.594,0,-83.4517	0/1:104:69,35:69:2471:35:1248:-73.0446,0,-131.935	0/1:238:135,102:135:4803:102:3635:-243.61,0,-279.579	0/1:76:27,49:27:968:49:1747:-129.04,0,-49.4202	0/1:54:26,28:26:932:28:1000:-70.6567,0,-49.9928	0/1:77:37,40:37:1319:40:1428:-102.273,0,-74.3076	0/1:129:59,70:59:2103:70:2512:-180.741,0,-116.427	0/1:34:15,19:15:519:19:680:-46.8631,0,-24.6527	0/1:68:40,28:40:1423:28:1008:-65.2362,0,-74.0691	0/1:48:32,16:32:1148:16:561:-33.4962,0,-61.8897	0/1:26:10,16:10:356:16:572:-41.3239,0,-17.7565	0/1:84:46,38:46:1652:38:1351:-90.5404,0,-90.2623	0/1:23:13,9:13:468:9:324:-21.5576,0,-28.3442	0/1:91:53,38:53:1890:38:1360:-91.3349,0,-112.44	0/1:96:47,49:47:1688:49:1760:-124.514,0,-95.5526
chr04	1232194	.	G	A	34843.5	PASS	AB=0.463695;ABP=91.621;AC=92;AF=0.489362;AN=188;AO=3590;CIGAR=1X;DP=7752;DPB=7752;DPRA=83.3441;EPP=7772.56;EPPR=9040.68;GTI=6;LEN=1;MEANALT=1;MQM=29.5042;MQMR=40.2446;NS=94;NUMALT=1;ODDS=0.446129;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127386;QR=148761;RO=4162;RPL=3587;RPP=7772.56;RPPR=9040.68;RPR=3;RUN=1;SAF=3590;SAP=7798.6;SAR=0;SRF=4162;SRP=9040.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:32,14:32:1148:14:500:-19.7284,0,-83.717	0/1:103:37,66:37:1313:66:2334:-124.787,0,-79.2161	0/1:117:57,60:57:2020:60:2136:-106.535,0,-133.796	0/1:156:74,82:74:2656:82:2891:-167.409,0,-183.812	0/1:57:17,40:17:608:40:1428:-83.9435,0,-34.6871	0/1:50:23,27:23:828:27:968:-49.5131,0,-53.5674	0/1:130:77,53:77:2752:53:1875:-99.078,0,-200.307	0/1:111:47,64:47:1684:64:2285:-117.933,0,-108.893	0/1:89:67,22:67:2393:22:780:-25.5673,0,-171.424	0/1:82:50,32:50:1777:32:1119:-57.0987,0,-130.142	0/1:69:40,29:40:1428:29:1044:-56.436,0,-102.524	0/1:93:47,46:47:1665:46:1644:-80.9901,0,-110.899	0/1:61:39,22:39:1404:22:773:-33.114,0,-97.865	0/1:86:46,40:46:1624:40:1417:-74.1895,0,-112.034	0/1:49:31,18:31:1108:18:629:-32.59,0,-82.0203	0/1:40:29,11:29:1044:11:396:-15.6059,0,-77.7571	0/1:60:28,32:28:1004:32:1103:-56.1613,0,-64.8795	0/1:52:31,21:31:1108:21:726:-32.7414,0,-75.2633	0/1:25:18,7:18:648:7:237:-8.83537,0,-46.5214	0/1:172:98,74:98:3516:74:2645:-142.225,0,-253.887	0/1:123:73,50:73:2597:50:1784:-89.8529,0,-185.984	0/1:115:65,50:65:2313:50:1773:-102.295,0,-169.228	0/1:77:53,24:53:1904:24:849:-38.6703,0,-142.183	0/1:100:38,62:38:1368:62:2205:-125.528,0,-88.2653	0/1:71:42,29:42:1504:29:1025:-50.8352,0,-107.895	0/1:127:58,69:58:2080:69:2449:-150.595,0,-145.423	0/1:145:96,49:96:3444:49:1745:-80.0914,0,-251.104	0/1:18:3,15:3:104:15:540:-32.7918,0,-3.95691	0/1:211:134,77:134:4801:77:2744:-149.001,0,-357.655	0/1:122:48,74:48:1709:74:2587:-148.306,0,-110.258	0/1:116:21,95:21:722:95:3374:-211.546,0,-27.6698	0/1:10:4,6:4:140:6:212:-12.1391,0,-9.47685	0/1:10:8,2:8:273:2:72:-2.34975,0,-20.3112	0/1:7:3,4:3:108:4:144:-7.69261,0,-7.37807	0/1:7:5,2:5:180:2:72:-2.92513,0,-12.6317	0/1:7:3,4:3:108:4:140:-7.62997,0,-7.37807	0/1:172:103,69:103:3671:69:2472:-137.666,0,-271.683	0/1:197:102,95:102:3626:95:3400:-180.838,0,-251.862	0/1:63:31,32:31:1112:32:1140:-56.1064,0,-73.3061	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.45449	0/1:90:38,52:38:1353:52:1852:-105.038,0,-90.1085	0/1:25:11,14:11:396:14:500:-27.8077,0,-25.0602	0/1:113:71,42:71:2552:42:1459:-70.2919,0,-181.907	0/1:49:39,10:39:1396:10:337:-11.2907,0,-106.84	0/1:58:33,25:33:1172:25:881:-48.3415,0,-84.8638	0/1:102:73,29:73:2598:29:1036:-50.3559,0,-197.913	0/1:106:54,52:54:1940:52:1860:-91.963,0,-131.751	0/1:82:37,45:37:1332:45:1589:-92.2967,0,-91.4426	0/1:99:77,22:77:2755:22:792:-29.515,0,-208.84	0/1:86:54,32:54:1920:32:1114:-57.0527,0,-140.182	0/1:213:106,107:106:3793:107:3840:-234.696,0,-270.369	0/1:7:5,2:5:180:2:72:-3.55622,0,-14.0052	0/1:76:49,27:49:1748:27:964:-40.5239,0,-122.648	0/1:66:27,39:27:968:39:1385:-86.1718,0,-65.9236	0/1:25:7,18:7:252:18:644:-35.1636,0,-14.3392	0/1:80:23,57:23:824:57:2029:-118.749,0,-47.4226	0/1:62:50,12:50:1785:12:417:-12.989,0,-136.138	0/1:6:3,3:3:108:3:108:-6.94001,0,-6.65129	0/0:11:10,1:10:360:1:36:0,-0.187692,-29.0551	0/1:105:56,49:56:1989:49:1718:-90.6868,0,-139.34	0/1:127:92,35:92:3274:35:1256:-54.5634,0,-248.206	0/1:8:6,2:6:216:2:72:-3.25519,0,-16.3067	0/1:154:63,91:63:2236:91:3260:-205.358,0,-149.133	0/1:150:94,56:94:3367:56:1956:-100.812,0,-247.772	0/1:42:18,24:18:648:24:845:-47.7769,0,-43.6649	0/1:83:36,47:36:1281:47:1669:-99.9434,0,-86.7133	0/1:136:79,57:79:2825:57:1991:-108.57,0,-202.899	0/1:108:89,19:89:3200:19:676:-18.2251,0,-244.072	0/1:28:8,20:8:288:20:720:-43.2297,0,-16.1335	0/1:117:61,56:61:2188:56:1993:-96.8314,0,-145.795	0/1:102:52,50:52:1859:50:1754:-106.31,0,-131.278	0/1:10:5,5:5:180:5:176:-10.5774,0,-13.1021	0/1:191:96,95:96:3452:95:3356:-165.199,0,-230.14	0/1:34:16,18:16:564:18:640:-32.8145,0,-37.3595	0/1:150:102,48:102:3621:48:1705:-75.8038,0,-264.622	0/1:155:75,80:75:2675:80:2826:-163.476,0,-185.982	0/1:62:37,25:37:1328:25:885:-40.2827,0,-92.5188	0/1:50:41,9:41:1468:9:324:-6.66702,0,-108.225	0/1:19:7,12:7:248:12:432:-22.9851,0,-15.4126	0/1:84:41,43:41:1472:43:1536:-83.7523,0,-101.099	0/1:99:34,65:34:1224:65:2298:-122.708,0,-71.872	0/1:236:99,137:99:3547:137:4889:-285.002,0,-235.801	0/1:76:50,26:50:1796:26:917:-45.8332,0,-132.548	0/1:54:30,24:30:1071:24:845:-44.4044,0,-76.8463	0/1:78:42,36:42:1504:36:1273:-70.7547,0,-108.564	0/1:129:71,58:71:2548:58:2084:-113.877,0,-183.977	0/1:31:19,12:19:684:12:413:-18.4674,0,-48.024	0/1:68:27,41:27:968:41:1437:-75.8312,0,-61.93	0/1:49:18,31:18:644:31:1108:-59.1239,0,-40.2094	0/1:26:16,10:16:576:10:345:-17.1312,0,-41.6124	0/1:82:41,41:41:1459:41:1457:-77.461,0,-100.47	0/1:21:9,12:9:324:12:428:-25.1459,0,-22.0723	0/1:90:38,52:38:1368:52:1838:-109.043,0,-92.3006	0/1:95:48,47:48:1709:47:1692:-95.975,0,-120.498
chr04	1253091	.	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chr04	1298329	.	C	A	99709.1	PASS	AB=0.51169;ABP=6.10729;AC=143;AF=0.768817;AN=186;AO=4646;CIGAR=1X;DP=5928;DPB=5928;DPRA=0;EPP=9987.71;EPPR=2691.97;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9602;MQMR=59.9867;NS=93;NUMALT=1;ODDS=2.19657;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166005;QR=45568;RO=1278;RPL=4634;RPP=9987.71;RPPR=2691.97;RPR=12;RUN=1;SAF=0;SAP=10091.7;SAR=4646;SRF=0;SRP=2778.15;SRR=1278;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:175:0,175:0:0:175:6252:-562.73,-52.6803,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:94:55,39:55:1964:39:1400:-98.0024,0,-148.738	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:39:21,18:21:738:18:642:-46.3693,0,-55.0012	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:59:0,59:0:0:59:2102:-189.448,-17.7608,0	0/1:46:29,17:29:1036:17:604:-40.8432,0,-79.7065	1/1:106:0,106:0:0:106:3795:-341.725,-31.9092,0	0/1:37:17,19:17:604:19:684:-50.6934,0,-43.4936	0/1:49:27,22:27:960:22:775:-55.3207,0,-71.9658	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	0/1:50:15,35:15:531:35:1260:-98.654,0,-33.0704	0/1:107:64,43:64:2296:43:1544:-107.043,0,-174.691	0/1:65:32,33:32:1148:33:1171:-86.1295,0,-84.0629	1/1:86:0,86:0:0:86:3060:-275.631,-25.8886,0	0/1:74:39,34:39:1404:34:1212:-87.0338,0,-104.324	1/1:44:1,43:1:36:43:1536:-134.935,-9.64705,0	0/1:59:30,29:30:1059:29:1031:-75.3419,0,-77.8597	0/1:167:74,93:74:2634:93:3311:-247.937,0,-187.034	0/1:165:76,88:76:2711:88:3135:-232.647,0,-194.505	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	0/1:177:81,96:81:2895:96:3422:-254.912,0,-207.503	1/1:58:2,56:2:72:56:1996:-173.077,-10.623,0	1/1:144:0,144:0:0:144:5155:-464.088,-43.3483,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:160:0,160:0:0:160:5752:-517.793,-48.1648,0	1/1:113:1,112:1:36:112:4006:-357.131,-30.4181,0	1/1:65:0,65:0:0:65:2305:-207.71,-19.567,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:58:24,34:24:856:34:1220:-92.6471,0,-59.9014	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:58:30,28:30:1076:28:1000:-72.8556,0,-79.6931	0/1:51:25,26:25:896:26:935:-69.1169,0,-65.6078	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:61:28,33:28:1000:33:1178:-87.9566,0,-71.9525	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:113:58,55:58:2055:55:1969:-143.468,0,-151.205	0/1:50:17,33:17:599:33:1180:-91.4565,0,-39.1866	0/1:77:34,43:34:1208:43:1539:-115.623,0,-85.8468	1/1:139:0,139:0:0:139:4971:-447.537,-41.8432,0	0/1:4:2,2:2:72:2:63:-4.77903,0,-5.6326	0/1:75:43,32:43:1540:32:1152:-81.4129,0,-116.316	1/1:73:0,73:0:0:73:2607:-234.878,-21.9752,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:82:0,82:0:0:82:2935:-264.384,-24.6845,0	0/1:47:28,19:28:1004:19:684:-47.7419,0,-76.5275	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:13:3,10:3:104:10:348:-27.7417,0,-5.78942	1/1:65:0,65:0:0:65:2331:-210.05,-19.567,0	0/1:143:74,69:74:2634:69:2470:-179.506,0,-194.259	.:.:.:.:.:.:.:.	1/1:150:0,150:0:0:150:5342:-480.909,-45.1545,0	0/1:46:21,25:21:744:25:891:-66.6614,0,-53.4369	0/1:45:20,25:20:701:25:900:-67.7747,0,-49.8654	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	0/1:20:11,9:11:388:9:324:-23.4853,0,-29.2368	0/1:22:16,6:16:567:6:216:-13.1679,0,-44.7381	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:30:0,30:0:0:30:1069:-96.521,-9.0309,0	1/1:98:0,98:0:0:98:3507:-315.84,-29.5009,0	0/1:30:9,21:9:324:21:752:-58.9754,0,-20.475	1/1:69:0,69:0:0:69:2464:-222.01,-20.7711,0	0/1:31:15,16:15:536:16:572:-42.4815,0,-39.2429	0/1:87:49,38:49:1744:38:1349:-95.5194,0,-131.055	1/1:99:1,98:1:36:98:3497:-311.211,-26.2037,0	0/1:98:40,58:40:1432:58:2079:-157.879,0,-99.6758	0/1:59:22,37:22:792:37:1328:-102.061,0,-53.8449	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:53:1,52:1:36:52:1844:-162.64,-12.3563,0	1/1:93:0,93:0:0:93:3307:-297.848,-27.9958,0	1/1:125:0,125:0:0:125:4448:-400.483,-37.6288,0	1/1:77:0,77:0:0:77:2755:-248.191,-23.1793,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:37:0,37:0:0:37:1309:-118.11,-11.1381,0	1/1:100:1,98:1:32:98:3515:-313.337,-26.9425,0	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	1/1:91:0,91:0:0:91:3244:-292.181,-27.3937,0	1/1:69:0,69:0:0:69:2471:-222.643,-20.7711,0	0/1:69:24,45:24:851:45:1583:-121.985,0,-56.1384	0/1:122:57,65:57:2025:65:2332:-173.413,0,-145.767	0/1:42:31,11:31:1116:11:396:-23.3395,0,-88.1084	1/1:51:0,51:0:0:51:1826:-164.62,-15.3525,0	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0
chr04	1308329	.	A	G	17700.8	PASS	AB=0.5189;ABP=9.3307;AC=44;AF=0.23913;AN=184;AO=1061;CIGAR=1X;DP=4227;DPB=4227;DPRA=1.06733;EPP=2306.94;EPPR=6877.89;GTI=1;LEN=1;MEANALT=1;MQM=59.9142;MQMR=59.9912;NS=92;NUMALT=1;ODDS=1.57428;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37816;QR=112494;RO=3166;RPL=0;RPP=2306.94;RPPR=6877.89;RPR=1061;RUN=1;SAF=1061;SAP=2306.94;SAR=0;SRF=3166;SRP=6877.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:4,12:4:136:12:428:-34.042,0,-7.75906	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.527	0/0:103:103,0:103:3606:0:0:0,-31.0061,-324.742	0/1:21:19,2:19:684:2:72:-0.515093,0,-55.5687	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:22:13,9:13:460:9:309:-21.5181,0,-35.1127	0/0:56:55,1:55:1950:1:36:0,-13.2594,-172.174	0/1:52:23,29:23:809:29:1029:-77.2676,0,-57.4747	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:96:96,0:96:3387:0:0:0,-28.8989,-305.044	0/1:66:32,34:32:1129:34:1216:-89.8786,0,-82.0484	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:64:32,32:32:1137:32:1148:-84.3639,0,-83.371	0/1:62:29,33:29:1028:33:1180:-87.8442,0,-74.1692	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/1:16:7,9:7:243:9:324:-24.6894,0,-17.391	0/1:62:24,38:24:856:38:1346:-102.774,0,-58.6972	0/1:93:44,49:44:1561:49:1727:-127.22,0,-112.784	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:39:15,24:15:540:24:852:-65.2602,0,-37.1964	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/1:13:3,10:3:108:10:356:-27.5218,0,-6.16178	0/1:105:48,57:48:1698:57:2044:-152.624,0,-121.494	0/1:132:72,60:72:2531:60:2144:-153.492,0,-188.302	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:104:51,53:51:1809:53:1904:-140.331,0,-131.783	0/0:14:13,1:13:453:1:36:0,-0.616145,-37.5013	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:6,5:6:201:5:180:-13.2407,0,-15.1057	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	.:.:.:.:.:.:.:.	0/1:9:5,4:5:165:4:144:-10.6043,0,-12.4643	0/0:146:146,0:146:5217:0:0:0,-43.9504,-469.668	0/0:18:18,0:18:603:0:0:0,-5.41854,-54.5814	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	.:.:.:.:.:.:.:.	0/1:48:23,25:23:820:25:877:-64.7958,0,-59.6731	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:48:20,28:20:716:28:989:-74.8726,0,-50.3183	0/1:44:25,19:25:900:19:669:-47.2886,0,-68.0711	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/1:44:21,23:21:748:23:824:-61.238,0,-54.4	0/0:27:27,0:27:919:0:0:0,-8.12781,-83.0147	0/1:87:45,42:45:1582:42:1489:-108.107,0,-116.477	0/1:48:27,21:27:957:21:748:-53.1959,0,-71.9944	0/1:81:45,36:45:1616:36:1296:-92.5605,0,-121.347	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:49:17,32:17:612:32:1137:-87.8865,0,-40.663	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:68:68,0:68:2399:0:0:0,-20.47,-216.162	0/1:10:5,5:5:180:5:169:-12.5312,0,-13.5418	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:5,3:5:180:3:100:-6.9222,0,-14.1438	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:59:30,29:30:1072:29:1044:-76.514,0,-79.0317	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:87:87,0:87:3090:0:0:0,-26.1896,-278.326	0/1:61:28,33:28:1004:33:1162:-86.5214,0,-72.313	0/1:14:10,4:10:345:4:144:-9.0992,0,-27.1664	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.484	0/1:71:31,40:31:1104:40:1425:-107.172,0,-78.2975	0/1:52:16,36:16:576:36:1292:-100.929,0,-36.5214	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:16:8,8:8:273:8:288:-21.4509,0,-20.0837	0/0:20:20,0:20:697:0:0:0,-6.0206,-63.0507	0/1:69:36,33:36:1262:33:1188:-86.4575,0,-93.1074	0/1:52:23,29:23:824:29:1028:-77.1795,0,-58.8298	0/0:78:78,0:78:2777:0:0:0,-23.4803,-250.17	0/1:35:18,17:18:629:17:597:-43.5201,0,-46.3977	0/1:68:33,35:33:1169:35:1243:-91.7031,0,-85.0452	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:91:91,0:91:3237:0:0:0,-27.3937,-291.551	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:36:35,1:35:1256:1:36:0,-7.2388,-109.747	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:22:10,12:10:345:12:432:-32.5985,0,-24.7582	0/1:51:26,25:26:936:25:900:-65.9685,0,-69.2069	0/1:73:24,49:24:864:49:1764:-137.069,0,-56.1074	0/0:131:130,1:130:4582:1:36:0,-35.8367,-408.943	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.671
chr04	1308341	.	C	A	45072	PASS	AB=0.515588;ABP=11.0664;AC=44;AF=0.23913;AN=184;AO=1977;CIGAR=1X;DP=8166;DPB=8166;DPRA=0.98562;EPP=36.6478;EPPR=18.9336;GTI=1;LEN=1;MEANALT=1.02083;MQM=59.9504;MQMR=59.9987;NS=92;NUMALT=1;ODDS=2.06373;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70336;QR=220348;RO=6187;RPL=3;RPP=4269.99;RPPR=13325.2;RPR=1974;RUN=1;SAF=1079;SAP=38.9939;SAR=898;SRF=3213;SRP=23.0583;SRR=2974;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:18,21:18:635:21:726:-53.9174,0,-45.7368	0/0:72:72,0:72:2566:0:0:0,-21.6742,-231.189	0/0:118:118,0:118:4210:0:0:0,-35.5215,-379.081	0/0:172:172,0:172:6106:0:0:0,-51.7772,-549.644	0/0:34:31,3:31:1112:3:108:0,-0.15985,-90.3162	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/1:66:35,31:35:1247:31:1094:-78.9003,0,-92.6661	0/0:120:119,1:119:4239:1:32:0,-32.9243,-378.489	0/1:100:49,51:49:1752:51:1816:-133.618,0,-127.861	0/0:88:88,0:88:3107:0:0:0,-26.4906,-279.857	0/0:90:90,0:90:3200:0:0:0,-27.0927,-288.222	0/0:179:179,0:179:6377:0:0:0,-53.8844,-574.022	0/1:134:65,69:65:2332:69:2467:-181.945,0,-169.802	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/1:133:65,68:65:2332:68:2408:-176.938,0,-170.103	0/1:120:56,64:56:1983:64:2296:-170.777,0,-142.62	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.231	0/0:62:62,0:62:2195:0:0:0,-18.6639,-197.816	0/1:50:25,25:25:888:25:896:-65.9089,0,-65.1875	0/1:138:55,83:55:1963:83:2920:-221.491,0,-135.402	0/1:174:91,82:91:3243:82:2896:-208.159,0,-239.654	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/1:69:31,38:31:1097:38:1332:-99.406,0,-78.2669	0/1:39:32,7:32:1129:7:252:-11.2888,0,-90.1762	0/1:45:22,23:22:780:23:807:-59.21,0,-56.9767	0/1:178:84,94:84:2987:94:3310:-244.533,0,-215.48	0/1:211:111,100:111:3968:100:3573:-258.26,0,-293.794	0/0:65:65,0:65:2298:0:0:0,-19.5669,-207.081	0/1:202:96,106:96:3416:106:3759:-277.699,0,-246.844	0/0:48:46,2:46:1630:2:72:0,-7.61272,-140.151	0/0:105:105,0:105:3702:0:0:0,-31.6081,-333.383	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	.:.:.:.:.:.:.:.	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:294:294,0:294:10451:0:0:0,-88.5028,-940.513	0/0:31:31,0:31:1099:0:0:0,-9.33193,-99.2195	0/0:78:78,0:78:2787:0:0:0,-23.4803,-251.07	.:.:.:.:.:.:.:.	0/1:121:59,62:59:2120:62:2205:-162.289,0,-154.644	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:67:31,36:31:1112:36:1284:-95.6944,0,-80.2223	0/1:90:45,45:45:1587:45:1612:-118.277,0,-116.022	0/0:108:108,0:108:3832:0:0:0,-32.5112,-345.077	0/1:81:36,45:36:1288:45:1577:-117.832,0,-91.8402	0/0:59:59,0:59:2099:0:0:0,-17.7608,-189.179	0/1:127:67,60:67:2395:60:2131:-153.824,0,-177.576	0/1:64:34,30:34:1216:30:1076:-77.8869,0,-90.4806	0/1:138:78,60:78:2786:60:2152:-152.405,0,-209.437	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:84:29,55:29:1040:55:1946:-150.128,0,-68.6278	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:126:126,0:126:4476:0:0:0,-37.9298,-403.011	0/1:23:10,13:10:360:13:460:-34.8117,0,-25.8206	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/1:119:63,56:63:2243:56:2008:-145.171,0,-166.311	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:145:145,0:145:5185:0:0:0,-43.6493,-466.788	0/1:111:52,59:52:1864:59:2104:-156.209,0,-134.625	0/1:40:25,15:25:892:15:527:-35.719,0,-68.5585	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/1:126:62,64:62:2228:64:2295:-168.881,0,-162.854	0/1:97:31,66:31:1104:66:2345:-182.106,0,-70.4707	0/0:71:71,0:71:2509:0:0:0,-21.3731,-226.062	0/0:45:45,0:45:1588:0:0:0,-13.5463,-143.208	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/1:22:10,12:10:356:12:432:-32.5985,0,-25.7586	0/0:49:48,0:48:1704:0:0:0,-14.4494,-153.286	0/1:111:45,66:45:1616:66:2372:-180.323,0,-112.316	0/1:126:61,65:61:2171:65:2327:-171.759,0,-157.726	0/0:153:153,0:153:5451:0:0:0,-46.0576,-490.718	0/1:55:27,28:27:960:28:999:-73.6679,0,-70.1596	0/1:118:58,60:58:2063:60:2152:-158.425,0,-150.419	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:98:98,0:98:3491:0:0:0,-29.5009,-314.402	0/0:108:107,1:107:3807:1:36:0,-28.913,-339.231	0/0:145:145,0:145:5148:0:0:0,-43.6493,-463.464	0/0:91:91,0:91:3242:0:0:0,-27.3937,-292.001	0/0:113:113,0:113:4006:0:0:0,-34.0164,-360.729	0/0:87:87,0:87:3107:0:0:0,-26.1896,-279.857	0/0:170:170,0:170:6038:0:0:0,-51.1751,-543.529	0/1:43:27,16:27:968:16:568:-38.5076,0,-74.4931	0/0:103:102,1:102:3642:1:36:0,-27.4078,-324.386	0/0:108:108,0:108:3858:0:0:0,-32.5112,-347.415	0/1:56:25,31:25:891:31:1116:-83.894,0,-63.6511	0/1:131:77,54:77:2746:54:1922:-133.821,0,-207.947	0/1:131:40,91:40:1428:91:3242:-252.566,0,-89.3826	0/0:198:198,0:198:7052:0:0:0,-59.6039,-634.744	0/0:226:226,0:226:8080:0:0:0,-68.0328,-727.22
chr04	1308711	.	G	A	25169.2	PASS	AB=0.530992;ABP=26.2959;AC=43;AF=0.233696;AN=184;AO=1491;CIGAR=1X;DP=5966;DPB=5966;DPRA=1.06424;EPP=3240.68;EPPR=9718.18;GTI=1;LEN=1;MEANALT=1;MQM=59.9336;MQMR=59.9942;NS=92;NUMALT=1;ODDS=0.0214768;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53087;QR=159482;RO=4474;RPL=0;RPP=3240.68;RPPR=9718.18;RPR=1491;RUN=1;SAF=1491;SAP=3240.68;SAR=0;SRF=4474;SRP=9718.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.282	0/0:111:111,0:111:3943:0:0:0,-33.4143,-355.059	0/0:120:120,0:120:4263:0:0:0,-36.1236,-383.846	0/0:16:15,1:15:536:1:36:0,-1.2182,-44.9765	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:80:38,42:38:1364:42:1489:-110.22,0,-98.9783	0/0:90:90,0:90:3202:0:0:0,-27.0927,-288.401	0/1:97:36,61:36:1292:61:2192:-168.345,0,-87.3839	0/0:69:69,0:69:2469:0:0:0,-20.7711,-222.462	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/1:86:46,40:46:1637:40:1440:-103.518,0,-121.728	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:81:52,29:52:1845:29:1044:-69.8914,0,-141.945	0/1:53:27,26:27:972:26:921:-67.2506,0,-71.8433	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:23:15,8:15:540:8:273:-17.9765,0,-42.0128	0/1:101:37,64:37:1313:64:2277:-174.787,0,-88.0657	0/1:181:85,96:85:2977:96:3429:-254.336,0,-213.671	0/0:28:28,0:28:978:0:0:0,-8.42884,-88.3278	0/1:67:37,30:37:1328:30:1065:-75.9907,0,-99.6532	0/0:138:136,2:136:4862:2:72:0,-34.7054,-430.893	0/1:76:39,37:39:1400:37:1313:-95.5914,0,-103.421	0/1:108:51,57:51:1798:57:2040:-151.361,0,-129.587	0/1:162:66,96:66:2342:96:3440:-261.046,0,-162.269	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:161:50,111:50:1781:111:3920:-304.467,0,-112.105	0/0:65:60,5:60:2133:5:180:0,-3.01488,-175.684	0/0:54:54,0:54:1910:0:0:0,-16.2556,-172.174	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:204:204,0:204:7305:0:0:0,-61.4101,-657.498	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	.:.:.:.:.:.:.:.	0/1:52:25,27:25:900:27:938:-69.0757,0,-65.6675	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:93:53,40:53:1904:40:1440:-101.902,0,-143.642	0/1:44:28,16:28:993:16:557:-37.2102,0,-76.4372	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:106:49,57:49:1749:57:2022:-150.34,0,-125.783	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/1:106:56,50:56:1993:50:1770:-127.671,0,-147.731	0/1:42:21,21:21:741:21:756:-55.724,0,-54.3683	0/1:53:21,32:21:756:32:1129:-85.9618,0,-52.4126	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.568	.:.:.:.:.:.:.:.	0/1:61:27,34:27:972:34:1220:-91.744,0,-69.4351	0/0:27:27,0:27:938:0:0:0,-8.12781,-84.7293	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:68:68,0:68:2399:0:0:0,-20.47,-216.162	0/1:25:11,14:11:377:14:504:-38.1723,0,-26.7322	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:3:1,2:1:36:2:57:-4.51022,0,-2.69518	0/0:51:51,0:51:1802:0:0:0,-15.3525,-162.458	0/1:80:44,36:44:1584:36:1277:-91.1441,0,-118.769	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:88:88,0:88:3153:0:0:0,-26.4906,-283.993	0/1:100:44,56:44:1584:56:2016:-151.61,0,-112.749	0/1:42:29,13:29:1044:13:445:-27.7321,0,-81.6315	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:113:55,58:55:1980:58:2034:-149.31,0,-144.458	0/1:88:14,74:14:504:74:2652:-212.435,0,-19.2075	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.0299	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.814	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:90:89,0:89:3177:0:0:0,-26.7917,-285.793	0/1:57:25,32:25:877:32:1132:-84.9844,0,-62.0865	0/1:152:96,56:96:3422:56:1993:-133.886,0,-262.435	0/0:98:98,0:98:3460:0:0:0,-29.5009,-311.609	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/1:69:21,48:21:756:48:1709:-133.095,0,-47.5962	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:52:52,0:52:1838:0:0:0,-15.6536,-165.697	0/0:111:111,0:111:3906:0:0:0,-33.4143,-351.728	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:130:130,0:130:4652:0:0:0,-39.1339,-418.84	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	0/0:55:55,0:55:1951:0:0:0,-16.5566,-175.865	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.956	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:61:27,34:27:972:34:1209:-90.7513,0,-69.4351	0/1:59:26,33:26:898:33:1188:-89.4678,0,-63.369	0/0:140:140,0:140:4961:0:0:0,-42.1442,-446.635	0/0:163:163,0:163:5815:0:0:0,-49.0679,-523.46
chr04	1438179	.	C	T	200348	PASS	AB=0.465774;ABP=65.2919;AC=144;AF=0.765957;AN=188;AO=9559;CIGAR=1X;DP=12847;DPB=12847;DPRA=0;EPP=20760.1;EPPR=7136.3;GTI=1;LEN=1;MEANALT=1.03191;MQM=56.7012;MQMR=59.9568;NS=94;NUMALT=1;ODDS=0.783431;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=340774;QR=117614;RO=3285;RPL=0;RPP=20760.1;RPPR=7136.3;RPR=9559;RUN=1;SAF=0;SAP=20760.1;SAR=9559;SRF=0;SRP=7136.3;SRR=3285;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:16,33:16:559:33:1180:-91.5483,0,-35.8871	1/1:152:0,152:0:0:152:5449:-488.306,-45.7566,0	1/1:168:0,168:0:0:168:5987:-537.353,-50.573,0	1/1:291:2,289:2:72:289:10286:-917.473,-80.763,0	1/1:90:0,90:0:0:90:3224:-290.234,-27.0927,0	1/1:92:0,92:0:0:92:3300:-296.544,-27.6948,0	0/1:156:72,84:72:2565:84:3004:-223.447,0,-184.138	1/1:197:0,196:0:0:196:6999:-626.283,-59.0019,0	0/1:70:30,40:30:1076:40:1425:-106.815,0,-76.0808	1/1:92:1,91:1:36:91:3253:-289.253,-24.0965,0	1/1:68:0,68:0:0:68:2436:-219.136,-20.47,0	1/1:88:0,88:0:0:88:3144:-282.472,-26.4906,0	0/1:82:48,34:48:1728:34:1203:-83.3604,0,-131.121	1/1:132:0,132:0:0:132:4720:-423.995,-39.736,0	0/1:84:41,43:41:1463:43:1540:-113.371,0,-106.679	0/1:62:28,34:28:1004:34:1212:-90.3999,0,-72.012	1/1:103:0,103:0:0:103:3623:-325.231,-31.0061,0	1/1:62:0,62:0:0:62:2186:-196.497,-18.6639,0	0/1:39:16,23:16:576:23:824:-62.6584,0,-40.4348	0/1:155:67,88:67:2408:88:3153:-236.747,0,-170.316	0/1:221:124,97:124:4452:97:3457:-244.294,0,-334.32	1/1:85:0,85:0:0:85:2965:-266.956,-25.5876,0	0/1:129:54,75:54:1925:75:2647:-199.078,0,-134.69	1/1:166:3,163:3:108:163:5844:-514.119,-39.8958,0	0/1:77:55,22:55:1961:22:792:-48.3923,0,-153.584	0/1:545:299,246:299:10731:246:8779:-625.532,0,-801.629	0/1:221:109,112:109:3898:112:3983:-291.411,0,-284.484	1/1:38:0,38:0:0:38:1356:-122.078,-11.4391,0	0/1:276:118,158:118:4236:158:5649:-424.806,0,-298.228	1/1:206:1,205:1:36:205:7300:-651.06,-58.4139,0	1/1:175:0,175:0:0:175:6241:-561.046,-52.6803,0	0/1:12:9,3:9:324:3:108:-6.45616,0,-25.8935	0/1:22:16,6:16:561:6:216:-13.1584,0,-44.1945	1/1:20:0,20:0:0:20:712:-64.2568,-6.0206,0	1/1:5:0,5:0:0:5:180:-16.535,-1.50515,0	0/1:17:13,4:13:468:4:144:-8.07706,0,-37.3283	1/1:308:0,308:0:0:308:10987:-987.577,-92.7172,0	1/1:254:0,254:0:0:254:9112:-819.037,-76.4616,0	1/1:112:0,112:0:0:112:3998:-358.969,-33.7154,0	0/1:5:3,2:3:108:2:72:-5.32832,0,-8.57002	0/1:226:116,110:116:4150:110:3913:-283.678,0,-305.649	1/1:33:0,33:0:0:33:1178:-106.156,-9.93399,0	0/1:266:139,127:139:5004:127:4516:-325.621,0,-370.428	0/1:116:56,60:56:2007:60:2121:-156.089,0,-145.983	1/1:106:0,106:0:0:106:3767:-336.649,-31.9092,0	0/1:186:100,86:100:3575:86:3080:-221.257,0,-265.262	1/1:192:1,191:1:36:191:6833:-609.277,-54.1995,0	0/1:322:162,160:162:5795:160:5687:-414.302,0,-424.73	0/1:184:77,107:77:2751:107:3800:-286.442,0,-192.442	0/1:180:107,72:107:3821:72:2565:-176.645,0,-289.84	1/1:206:0,206:0:0:206:7374:-663.229,-62.0122,0	0/1:17:9,8:9:324:8:288:-21.1466,0,-24.3883	0/1:207:124,83:124:4444:83:2961:-203.771,0,-337.817	1/1:39:1,38:1:36:38:1349:-117.965,-8.1419,0	1/1:47:0,47:0:0:47:1677:-150.827,-14.1484,0	1/1:174:0,174:0:0:174:6196:-556.96,-52.3792,0	0/1:51:32,19:32:1148:19:668:-45.0092,0,-88.2773	1/1:13:0,13:0:0:13:468:-42.4229,-3.91339,0	0/1:20:7,13:7:252:13:464:-36.0479,0,-17.0084	1/1:122:0,122:0:0:122:4349:-390.479,-36.7257,0	0/1:159:89,70:89:3192:70:2483:-175.295,0,-239.637	0/1:19:8,11:8:288:11:392:-29.8963,0,-20.5478	1/1:475:0,475:0:0:475:16914:-1520.68,-142.989,0	0/1:312:181,131:181:6467:131:4681:-327.384,0,-488.19	0/1:145:85,60:85:3056:60:2132:-148.277,0,-231.619	1/1:143:0,143:0:0:143:5079:-456.775,-43.0473,0	0/1:269:162,107:162:5788:107:3799:-260.938,0,-440.056	0/1:173:116,57:116:4168:57:2025:-130.096,0,-323.22	1/1:42:0,42:0:0:42:1485:-133.677,-12.6433,0	1/1:108:0,108:0:0:108:3842:-343.561,-32.5112,0	1/1:131:0,131:0:0:131:4676:-419.6,-39.4349,0	0/1:37:20,17:20:720:17:604:-43.5432,0,-53.9907	1/1:80:0,80:0:0:80:2859:-256.761,-24.0824,0	0/1:80:38,42:38:1352:42:1508:-111.591,0,-97.898	0/1:287:138,149:138:4948:149:5344:-392.763,0,-359.073	1/1:218:1,217:1:36:217:7758:-693.754,-62.0263,0	0/1:107:76,31:76:2709:31:1077:-64.7318,0,-211.684	0/1:205:123,82:123:4393:82:2920:-200.732,0,-333.809	1/1:10:0,10:0:0:10:335:-30.4393,-3.0103,0	1/1:161:1,160:1:36:160:5715:-509.099,-44.8676,0	1/1:67:0,67:0:0:67:2400:-215.625,-20.169,0	1/1:375:0,374:0:0:374:13339:-1198.13,-112.585,0	1/1:127:0,127:0:0:127:4494:-403.516,-38.2308,0	1/1:75:0,75:0:0:75:2649:-238.259,-22.5773,0	1/1:122:0,122:0:0:122:4339:-390.123,-36.7257,0	1/1:241:4,237:4:144:237:8481:-748.694,-59.2346,0	0/1:48:27,21:27:972:21:739:-52.2116,0,-73.3485	1/1:121:1,120:1:36:120:4273:-379.84,-32.8264,0	1/1:98:0,98:0:0:98:3459:-310.849,-29.5009,0	0/1:45:21,24:21:756:24:860:-64.0027,0,-54.8209	0/1:156:86,70:86:3059:70:2504:-178.345,0,-228.579	0/1:82:52,30:52:1856:30:1080:-72.7086,0,-142.635	1/1:155:0,155:0:0:155:5529:-496.681,-46.6597,0	1/1:141:0,141:0:0:141:5056:-454.879,-42.4452,0
chr04	1438226	.	A	T	11503.9	PASS	AB=0.240278;ABP=3287.62;AC=41;AF=0.218085;AN=188;AO=1369;CIGAR=1X;DP=15697;DPB=15697;DPRA=1.03634;EPP=2975.76;EPPR=31115.9;GTI=14;LEN=1;MEANALT=1;MQM=51.3367;MQMR=56.6889;NS=94;NUMALT=1;ODDS=3.60781;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48959;QR=513029;RO=14328;RPL=0;RPP=2975.76;RPPR=4110.51;RPR=1369;RUN=1;SAF=1369;SAP=2975.76;SAR=0;SRF=4561;SRP=4110.51;SRR=9767;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:49,20:49:1756:20:720:-42.9524,0,-136.536	0/0:238:237,1:237:8477:1:36:0,-68.0664,-756.378	0/0:255:255,0:255:9156:0:0:0,-76.7626,-821.632	0/0:381:380,1:380:13600:1:36:0,-111.101,-1218.16	0/0:176:176,0:176:6328:0:0:0,-52.9813,-568.142	0/0:122:122,0:122:4357:0:0:0,-36.7257,-390.869	0/1:148:127,21:127:4536:21:756:-23.6846,0,-363.516	0/0:329:329,0:329:11788:0:0:0,-99.0389,-1053.37	0/1:75:57,18:57:2048:18:648:-35.3321,0,-161.299	0/0:180:180,0:180:6472:0:0:0,-54.1854,-581.493	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.02	0/0:140:140,0:140:5012:0:0:0,-42.1442,-450.216	0/1:74:64,10:64:2296:10:360:-10.2906,0,-182.884	0/0:193:193,0:193:6891:0:0:0,-58.0988,-617.92	0/1:89:63,26:63:2252:26:932:-55.9753,0,-175.387	0/1:66:49,17:49:1760:17:612:-35.1461,0,-138.462	0/0:142:141,1:141:5064:1:36:0,-39.1675,-450.611	0/0:94:94,0:94:3384:0:0:0,-28.2968,-303.975	0/1:45:35,10:35:1260:10:360:-18.9512,0,-99.2918	0/1:218:160,58:160:5736:58:2061:-118.044,0,-448.598	0/1:198:139,59:139:4958:59:2112:-127.684,0,-386.17	0/0:185:185,0:185:6579:0:0:0,-55.6905,-591.373	0/1:133:108,25:108:3837:25:896:-40.6205,0,-304.881	0/0:266:262,4:262:9388:4:144:0,-67.2321,-828.887	0/1:64:48,16:48:1697:16:572:-32.323,0,-133.338	0/1:495:343,152:343:12266:152:5424:-337.023,0,-952.982	0/1:240:182,58:182:6478:58:2065:-112.848,0,-509.661	0/0:59:59,0:59:2112:0:0:0,-17.7608,-189.85	0/1:315:261,54:261:9353:54:1932:-78.5591,0,-745.888	0/0:314:311,3:311:11114:3:104:0,-84.8445,-987.068	0/0:265:265,0:265:9472:0:0:0,-79.7729,-851.342	0/1:6:3,3:3:108:3:108:-8.05035,0,-8.26234	0/1:12:10,2:10:356:2:72:-3.19463,0,-28.7543	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.4366	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.114	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.5384	0/0:441:439,2:439:15712:2:72:0,-125.922,-1404.96	0/0:367:367,0:367:13136:0:0:0,-110.478,-1180.26	0/0:153:153,0:153:5477:0:0:0,-46.0576,-491.739	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0704	0/1:210:161,49:161:5768:49:1756:-92.3472,0,-454.777	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.615	0/1:217:163,54:163:5836:54:1920:-106.302,0,-457.789	0/1:92:76,16:76:2728:16:576:-24.2198,0,-217.529	0/0:145:145,0:145:5193:0:0:0,-43.6493,-465.121	0/1:150:135,15:135:4836:15:532:-3.02226,0,-388.564	0/0:269:269,0:269:9635:0:0:0,-80.9771,-864.589	0/1:319:241,78:241:8644:78:2800:-155.284,0,-680.61	0/1:203:161,42:161:5761:42:1504:-73.6909,0,-456.45	0/1:182:128,54:128:4592:54:1924:-118.176,0,-357.738	0/0:336:336,0:336:12017:0:0:0,-101.146,-1078.77	0/1:11:10,1:10:360:1:36:-0.169365,0,-29.4289	0/1:169:140,29:140:5016:29:1044:-42.7993,0,-399.673	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.828	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.062	0/0:298:297,1:297:10648:1:36:0,-86.9707,-951.774	0/1:69:48,21:48:1712:21:756:-47.1623,0,-133.475	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.0921	0/1:21:15,6:15:536:6:212:-13.0903,0,-42.2243	0/0:152:152,0:152:5444:0:0:0,-45.7566,-488.934	0/1:140:107,33:107:3828:33:1188:-64.8802,0,-301.951	0/1:18:12,6:12:428:6:216:-14.3343,0,-33.4357	0/0:631:631,0:631:22592:0:0:0,-189.95,-2030.31	0/1:270:186,84:186:6656:84:3000:-187.594,0,-517.517	0/1:102:86,16:86:3080:16:572:-20.9368,0,-246.264	0/0:201:201,0:201:7192:0:0:0,-60.507,-646.463	0/1:226:169,57:169:6052:57:2040:-115.242,0,-476.187	0/1:89:76,13:76:2728:13:460:-14.8703,0,-218.572	0/0:54:54,0:54:1944:0:0:0,-16.2556,-174.942	0/0:164:164,0:164:5876:0:0:0,-49.3689,-525.345	0/0:196:194,2:194:6949:2:72:0,-52.1701,-617.244	0/0:22:21,1:21:752:1:36:0,-3.03124,-64.4037	0/0:127:127,0:127:4532:0:0:0,-38.2308,-405.259	0/1:73:53,20:53:1908:20:708:-41.738,0,-149.643	0/1:237:204,33:204:7285:33:1184:-34.9161,0,-582.659	0/0:349:348,1:348:12458:1:36:0,-101.468,-1115.78	0/1:135:70,65:70:2516:65:2332:-167.608,0,-184.546	0/1:151:116,35:116:4156:35:1237:-64.5934,0,-327.358	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.139	0/0:258:258,0:258:9248:0:0:0,-77.6657,-829.737	0/0:144:144,0:144:5140:0:0:0,-43.3483,-459.802	0/0:516:514,2:514:18420:2:72:0,-148.613,-1647.83	0/0:195:195,0:195:7008:0:0:0,-58.7008,-629.644	0/0:123:123,0:123:4407:0:0:0,-37.0267,-395.938	0/0:163:163,0:163:5844:0:0:0,-49.0679,-525.065	0/0:341:341,0:341:12239:0:0:0,-102.651,-1099.72	0/1:46:32,14:32:1152:14:500:-31.2516,0,-89.928	0/0:176:174,2:174:6216:2:72:0,-46.1816,-550.601	0/0:137:137,0:137:4896:0:0:0,-41.2411,-439.498	0/1:51:33,18:33:1188:18:644:-41.6538,0,-91.6186	0/1:119:98,21:98:3516:21:752:-31.6317,0,-280.109	0/1:59:41,18:41:1468:18:648:-39.6814,0,-114.531	0/0:236:236,0:236:8484:0:0:0,-71.0431,-762.889	0/0:209:208,1:208:7444:1:36:0,-59.3238,-665.021
chr04	1441979	.	C	G	16308.1	PASS	AB=0.498233;ABP=3.06401;AC=43;AF=0.231183;AN=186;AO=992;CIGAR=1X;DP=4675;DPB=4675;DPRA=0.931094;EPP=2148.43;EPPR=7935.51;GTI=1;LEN=1;MEANALT=1;MQM=59.623;MQMR=59.6933;NS=93;NUMALT=1;ODDS=2.18432;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35318;QR=131416;RO=3681;RPL=1;RPP=2148.43;RPPR=7935.51;RPR=991;RUN=1;SAF=0;SAP=2157.11;SAR=992;SRF=0;SRP=7996.2;SRR=3681;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:10,11:10:352:11:396:-29.6529,0,-25.6933	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.744	0/0:107:107,0:107:3829:0:0:0,-32.2102,-344.79	0/0:130:130,0:130:4660:0:0:0,-39.1339,-419.463	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8509	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8446	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2444	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.019	0/1:45:23,22:23:824:22:776:-56.6115,0,-60.9288	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.305	0/0:35:35,0:35:1260:0:0:0,-10.536,-112.6	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.538	0/1:52:19,33:19:676:33:1179:-90.7555,0,-45.5144	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:52:20,32:20:720:32:1093:-83.0086,0,-49.4752	0/1:45:27,18:27:968:18:629:-43.3874,0,-73.8864	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:23:13,10:13:468:10:347:-24.6399,0,-35.5195	0/1:52:29,23:29:1040:23:824:-58.695,0,-78.2608	0/1:73:32,41:32:1133:41:1453:-109.083,0,-80.1716	0/0:41:40,1:40:1440:1:36:0,-8.74395,-126.299	0/1:51:32,19:32:1118:19:675:-45.7221,0,-85.5682	0/0:37:36,1:36:1292:1:21:0,-9.03816,-114.479	0/1:20:9,11:9:320:11:396:-29.9335,0,-23.1218	0/1:118:61,57:61:2180:57:2035:-147.899,0,-160.414	0/1:64:38,26:38:1348:26:936:-65.2935,0,-102.146	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0832	0/1:74:37,37:37:1328:37:1324:-97.1785,0,-97.275	0/0:88:87,1:87:3094:1:36:0,-22.8924,-275.031	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.977	0/1:5:3,2:3:89:2:68:-4.95256,0,-6.79921	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:161:0:0:0,-1.50515,-14.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:143:143,0:143:5136:0:0:0,-43.0473,-462.37	0/0:100:98,0:98:3475:0:0:0,-29.5009,-312.554	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	.:.:.:.:.:.:.:.	0/1:152:74,78:74:2648:78:2796:-206.105,0,-192.676	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5506	0/1:34:20,14:20:703:14:500:-35.1012,0,-53.3585	0/1:24:12,12:12:428:12:432:-31.9965,0,-31.6341	0/0:54:54,0:54:1909:0:0:0,-16.2556,-172.008	0/1:46:19,27:19:680:27:964:-73.2276,0,-47.6818	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2681	0/1:90:28,62:28:1008:62:2206:-171.71,0,-63.939	0/1:56:32,24:32:1152:24:860:-60.8642,0,-87.1325	0/1:69:46,23:46:1652:23:824:-53.7122,0,-128.193	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:77:51,26:51:1828:26:917:-59.6525,0,-141.597	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7915	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0742	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.581	0/1:15:7,8:7:252:8:279:-20.9274,0,-18.5111	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:2,3:2:57:3:104:-8.19427,0,-3.90816	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:68:39,29:39:1381:29:1044:-73.7848,0,-104.113	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:151:151,0:151:5386:0:0:0,-45.4555,-484.865	0/1:68:28,40:28:981:40:1432:-108.701,0,-68.1287	0/1:37:24,13:24:849:13:468:-31.3215,0,-65.5851	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.241	0/1:77:46,31:46:1641:31:1112:-77.2084,0,-124.762	0/1:83:31,52:31:1116:52:1859:-142.548,0,-75.7568	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:13:5,8:5:180:8:254:-19.2087,0,-12.6387	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.018	0/1:51:26,25:26:932:25:900:-65.9521,0,-68.4743	0/1:67:35,32:35:1252:32:1152:-83.8165,0,-92.8115	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.071	0/1:25:13,12:13:453:12:432:-31.6872,0,-33.5518	0/1:40:25,15:25:885:15:527:-35.7108,0,-67.9138	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.458	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.35	0/0:81:80,1:80:2857:1:36:0,-20.7852,-253.749	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.662	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.882	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.389	0/0:90:90,0:90:3210:0:0:0,-27.0927,-289.087	0/1:23:12,11:12:432:11:396:-28.114,0,-32.2975	0/0:51:51,0:51:1775:0:0:0,-15.3525,-160.019	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.563	0/1:23:7,16:7:252:16:561:-43.8934,0,-16.1053	0/1:59:23,36:23:824:36:1283:-98.0109,0,-56.6895	0/1:57:24,33:24:864:33:1180:-89.347,0,-60.9101	0/0:147:147,0:147:5204:0:0:0,-44.2514,-468.371	0/0:86:86,0:86:3067:0:0:0,-25.8886,-276.236
chr04	1461918	.	A	G	4771.97	PASS	AB=0.476739;ABP=23.0127;AC=45;AF=0.239362;AN=188;AO=2049;CIGAR=1X;DP=8464;DPB=8464;DPRA=1.19216;EPP=4452.36;EPPR=13930.8;GTI=11;LEN=1;MEANALT=1.02041;MQM=19.8023;MQMR=33.9146;NS=94;NUMALT=1;ODDS=0.686271;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73143;QR=229539;RO=6414;RPL=0;RPP=4452.36;RPPR=13930.8;RPR=2049;RUN=1;SAF=2049;SAP=4452.36;SAR=0;SRF=6414;SRP=13930.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:28,26:28:993:26:924:-19.1729,0,-58.3147	0/0:67:67,0:67:2397:0:0:0,-20.169,-182.002	0/0:167:167,0:167:5977:0:0:0,-50.272,-452.526	0/0:91:91,0:91:3252:0:0:0,-27.3937,-265.898	0/0:102:102,0:102:3660:0:0:0,-30.7051,-290.427	0/0:32:32,0:32:1152:0:0:0,-9.63296,-87.4328	0/1:71:41,30:41:1468:30:1080:-37.4062,0,-99.0515	0/0:171:171,0:171:6136:0:0:0,-51.4761,-460.096	0/1:85:50,35:50:1796:35:1251:-24.2868,0,-107.659	0/0:82:82,0:82:2940:0:0:0,-24.6845,-241.272	0/0:56:56,0:56:2004:0:0:0,-16.8577,-162.93	0/0:94:94,0:94:3368:0:0:0,-28.2968,-253.007	0/1:54:34,20:34:1209:20:716:-12.0079,0,-75.299	0/0:88:88,0:88:3156:0:0:0,-26.4906,-245.207	0/1:59:33,26:33:1180:26:928:-28.1052,0,-77.1995	0/1:50:26,24:26:921:24:860:-25.7476,0,-57.5123	0/0:38:38,0:38:1368:0:0:0,-11.4391,-103.734	0/0:41:41,0:41:1472:0:0:0,-12.3422,-111.64	0/1:46:31,15:31:1116:15:540:-8.7702,0,-68.8975	0/1:328:162,166:162:5804:166:5952:-205.283,0,-375.662	0/1:117:66,51:66:2372:51:1821:-58.1656,0,-150.003	0/0:114:114,0:114:4066:0:0:0,-34.3174,-339.024	0/1:80:29,51:29:1044:51:1828:-69.7028,0,-61.5845	0/0:56:52,4:52:1864:4:140:0,-10.3272,-140.127	0/1:84:48,36:48:1728:36:1284:-32.8563,0,-110.565	0/1:166:98,68:98:3501:68:2417:-86.6222,0,-242.646	0/1:231:126,105:126:4475:105:3753:-110.803,0,-284.462	0/0:24:24,0:24:860:0:0:0,-7.22472,-67.4554	0/1:277:160,117:160:5691:117:4181:-152.732,0,-391.553	0/0:147:143,4:143:5117:4:144:0,-38.347,-397.709	0/0:52:52,0:52:1857:0:0:0,-15.6536,-153.425	1/1:10:1,9:1:32:9:320:-14.4269,-0.0226366,0	0/1:29:17,12:17:608:12:432:-13.0074,0,-40.1784	0/0:7:7,0:7:252:0:0:0,-2.10721,-19.549	0/0:16:16,0:16:572:0:0:0,-4.81648,-43.2495	0/1:34:21,13:21:756:13:468:-9.00671,0,-47.0477	0/0:147:147,0:147:5280:0:0:0,-44.2514,-434.297	0/0:128:128,0:128:4588:0:0:0,-38.5318,-362.46	0/0:77:77,0:77:2760:0:0:0,-23.1793,-205.499	0/1:7:1,6:1:36:6:216:-10.4266,0,-1.08041	0/1:77:45,32:45:1620:32:1148:-32.0789,0,-104.936	0/0:34:34,0:34:1220:0:0:0,-10.235,-97.2481	0/1:151:85,66:85:3033:66:2326:-70.9486,0,-190.935	0/1:32:15,17:15:532:17:612:-22.6104,0,-34.0713	0/0:54:53,1:53:1908:1:36:0,-14.4623,-155.375	0/1:127:79,48:79:2829:48:1720:-55.1757,0,-196.521	0/0:181:181,0:181:6478:0:0:0,-54.4864,-488.394	0/1:169:89,80:89:3181:80:2861:-98.6691,0,-209.416	0/1:109:56,53:56:2012:53:1885:-60.4137,0,-133.568	0/1:140:67,73:67:2392:73:2605:-97.6919,0,-154.693	0/0:78:78,0:78:2766:0:0:0,-23.4803,-231.292	0/1:11:8,3:8:288:3:108:-2.33857,0,-20.258	0/1:161:79,82:79:2840:82:2933:-61.0415,0,-167.087	0/0:55:55,0:55:1980:0:0:0,-16.5566,-165.99	0/0:30:30,0:30:1080:0:0:0,-9.0309,-81.5852	0/0:137:137,0:137:4886:0:0:0,-41.2411,-383.3	0/1:12:4,8:4:144:8:288:-11.3226,0,-8.59403	0/0:14:14,0:14:500:0:0:0,-4.21442,-42.0776	0/1:26:12,14:12:424:14:500:-21.3226,0,-26.2841	0/0:81:81,0:81:2912:0:0:0,-24.3834,-229.434	0/1:103:46,57:46:1648:57:2029:-76.3595,0,-104.395	0/1:8:1,7:1:36:7:237:-10.1475,0,-0.890785	0/0:142:142,0:142:5059:0:0:0,-42.7463,-420.028	0/1:157:90,67:90:3194:67:2404:-78.4434,0,-212.615	0/1:73:49,24:49:1756:24:856:-19.2107,0,-116.505	0/0:77:77,0:77:2768:0:0:0,-23.1793,-223.86	0/1:106:57,49:57:2052:49:1737:-66.7122,0,-134.833	0/1:153:49,103:49:1730:103:3692:-151.964,0,-94.0697	0/0:61:61,0:61:2188:0:0:0,-18.3628,-170.348	0/0:57:57,0:57:2021:0:0:0,-17.1587,-152.998	0/0:42:42,0:42:1489:0:0:0,-12.6433,-123.957	0/1:14:9,5:9:320:5:180:-6.51361,0,-22.5133	0/0:155:154,1:154:5536:1:36:0,-45.5609,-416.519	0/1:88:49,39:49:1749:39:1388:-27.2716,0,-105.755	0/1:151:64,87:64:2277:87:3083:-118.754,0,-135.313	0/0:176:176,0:176:6312:0:0:0,-52.9813,-515.821	0/1:143:67,76:67:2389:76:2694:-64.9311,0,-137.074	0/1:110:58,52:58:2042:52:1830:-43.0681,0,-123.261	0/0:26:26,0:26:932:0:0:0,-7.82678,-70.3237	0/0:103:102,1:102:3656:1:36:0,-29.4103,-286.904	0/0:161:161,0:161:5772:0:0:0,-48.4658,-431.695	0/0:130:130,0:130:4649:0:0:0,-39.1339,-379.02	0/0:46:46,0:46:1656:0:0:0,-13.8474,-136.162	0/0:68:68,0:68:2440:0:0:0,-20.47,-201.153	0/0:38:38,0:38:1368:0:0:0,-11.4391,-112.863	0/0:100:100,0:100:3592:0:0:0,-30.103,-293.513	0/1:25:10,15:10:356:15:536:-12.8636,0,-20.1291	0/0:70:70,0:70:2508:0:0:0,-21.0721,-188.06	0/0:61:61,0:61:2188:0:0:0,-18.3628,-165.457	0/1:81:46,35:46:1656:35:1248:-32.4764,0,-107.356	0/1:136:78,58:78:2804:58:2080:-58.9226,0,-182.237	0/1:121:43,78:43:1544:78:2800:-104.153,0,-89.2535	0/0:152:152,0:152:5411:0:0:0,-45.7566,-439.466	0/0:72:72,0:72:2588:0:0:0,-21.6742,-209.331
chr04	1466507	.	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chr04	1568057	.	ATGGATCGG	ATGGGTCGG	176099	PASS	AB=0.484205;ABP=14.7406;AC=145;AF=0.771277;AN=188;AO=8333;CIGAR=4M1X4M;DP=11225;DPB=11224.9;DPRA=0;EPP=18002.5;EPPR=5985.47;GTI=1;LEN=1;MEANALT=2.18085;MQM=59.9993;MQMR=60;NS=94;NUMALT=1;ODDS=0.822422;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=297805;QR=97039;RO=2771;RPL=11;RPP=18002.5;RPPR=5985.47;RPR=8322;RUN=1;SAF=8333;SAP=18097.9;SAR=0;SRF=2771;SRP=6020.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:21,31:21:748:31:1116:-85.0981,0,-51.9919	1/1:207:0,203:0:0:203:7252:-652.409,-61.1091,0	1/1:171:0,169:0:0:169:6044:-543.793,-50.8741,0	1/1:322:1,319:1:35:319:11435:-1025.55,-93.1659,0	1/1:30:0,30:0:0:30:1065:-96.1598,-9.0309,0	1/1:66:0,64:0:0:64:2274:-204.562,-19.2659,0	0/1:99:45,53:45:1568:53:1883:-139.887,0,-111.549	1/1:206:0,202:0:0:202:7175:-645.49,-60.8081,0	0/1:111:68,42:68:2378:42:1508:-102.619,0,-180.884	1/1:160:0,160:0:0:160:5732:-515.996,-48.1648,0	1/1:90:0,89:0:0:89:3183:-286.423,-26.7917,0	1/1:72:0,71:0:0:71:2528:-227.491,-21.3731,0	0/1:82:39,41:39:1358:41:1476:-108.713,0,-98.0947	1/1:105:0,103:0:0:103:3688:-331.827,-31.0061,0	0/1:86:48,38:48:1669:38:1364:-97.1721,0,-124.607	0/1:97:55,41:55:1948:41:1472:-103.517,0,-146.337	1/1:120:0,118:0:0:118:4228:-380.34,-35.5215,0	1/1:101:0,101:0:0:101:3632:-327.084,-30.404,0	0/1:73:42,31:42:1480:31:1112:-78.4162,0,-111.519	0/1:138:68,69:68:2392:69:2442:-178.481,0,-173.986	0/1:173:66,104:66:2268:104:3713:-282.875,0,-152.887	1/1:54:0,54:0:0:54:1910:-172.174,-16.2556,0	0/1:104:54,50:54:1874:50:1788:-129.895,0,-137.631	1/1:267:15,249:15:515:249:8919:-756.019,-33.1231,0	0/1:61:35,26:35:1223:26:932:-65.836,0,-92.0108	0/1:344:189,150:189:6660:150:5350:-379.226,0,-497.084	0/1:206:94,111:94:3308:111:3965:-295.009,0,-235.911	1/1:38:0,36:0:0:36:1284:-115.608,-10.8371,0	0/1:285:112,171:112:3907:171:6123:-465.687,0,-266.348	0/1:203:71,131:71:2507:131:4676:-359.874,0,-164.755	1/1:137:0,137:0:0:137:4872:-438.634,-41.2411,0	0/1:4:2,2:2:70:2:72:-5.6326,0,-5.44321	0/1:17:12,5:12:421:5:180:-11.4346,0,-33.1074	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:19:9,10:9:309:10:360:-27.0247,0,-22.4224	1/1:306:0,305:0:0:305:10918:-982.157,-91.8142,0	1/1:214:0,212:0:0:212:7585:-682.328,-63.8184,0	1/1:105:0,102:0:0:102:3644:-327.883,-30.7051,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:184:92,92:92:3220:92:3273:-239.4,0,-234.638	1/1:47:0,47:0:0:47:1671:-150.677,-14.1484,0	0/1:205:115,88:115:4002:88:3145:-221.805,0,-298.91	0/1:123:56,66:56:1951:66:2348:-174.494,0,-138.778	1/1:78:0,78:0:0:78:2788:-251.161,-23.4803,0	0/1:118:80,37:80:2836:37:1320:-83.5217,0,-219.9	1/1:127:0,125:0:0:125:4471:-402.293,-37.6288,0	0/1:316:180,135:180:6299:135:4782:-335.431,0,-471.916	0/1:125:83,41:83:2897:41:1476:-95.4486,0,-223.282	0/1:149:88,58:88:3083:58:2069:-142.239,0,-233.462	1/1:247:1,243:1:36:243:8679:-777.541,-70.2012,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:115:53,62:53:1858:62:2228:-166.165,0,-132.881	1/1:36:0,35:0:0:35:1260:-113.482,-10.5361,0	1/1:30:0,29:0:0:29:1027:-92.4887,-8.72987,0	1/1:146:0,141:0:0:141:5036:-453.067,-42.4452,0	0/1:80:28,51:28:969:51:1828:-140.777,0,-63.4959	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:7:3,4:3:107:4:144:-11.2064,0,-7.87496	1/1:80:1,79:1:36:79:2832:-251.52,-20.4841,0	0/1:133:66,66:66:2340:66:2368:-173.282,0,-170.765	0/1:9:7,2:7:246:2:72:-4.12745,0,-19.7725	1/1:235:1,230:1:36:230:8180:-732.68,-66.2829,0	0/1:237:119,117:119:4171:117:4183:-305.407,0,-304.336	0/1:111:54,56:54:1878:56:1992:-146.081,0,-135.824	1/1:123:0,122:0:0:122:4364:-392.595,-36.7257,0	0/1:175:87,85:87:3027:85:3041:-221.823,0,-220.57	0/1:128:86,41:86:3026:41:1468:-93.845,0,-234.003	1/1:47:1,46:1:36:46:1656:-145.73,-10.5501,0	1/1:141:0,139:0:0:139:4967:-446.952,-41.8432,0	1/1:83:0,82:0:0:82:2944:-264.834,-24.6845,0	0/1:19:6,13:6:212:13:468:-36.7401,0,-13.7054	1/1:50:0,47:0:0:47:1684:-151.494,-14.1484,0	0/1:115:46,67:46:1580:67:2400:-181.987,0,-108.216	0/1:151:79,71:79:2749:71:2536:-182.977,0,-202.14	1/1:151:0,148:0:0:148:5253:-472.587,-44.5524,0	0/1:186:108,77:108:3804:77:2732:-190.219,0,-286.663	0/1:209:92,115:92:3190:115:4116:-307.981,0,-224.684	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:107:0,104:0:0:104:3728:-335.361,-31.3071,0	1/1:90:0,89:0:0:89:3189:-286.872,-26.7917,0	1/1:206:0,203:0:0:203:7249:-652.163,-61.1091,0	1/1:126:0,124:0:0:124:4447:-400.113,-37.3277,0	1/1:74:0,73:0:0:73:2605:-234.335,-21.9752,0	1/1:139:0,137:0:0:137:4924:-442.949,-41.2411,0	1/1:197:2,192:2:72:192:6861:-610.722,-51.9229,0	0/1:67:30,36:30:1065:36:1292:-96.3948,0,-75.973	1/1:125:0,124:0:0:124:4422:-397.792,-37.3277,0	1/1:99:0,98:0:0:98:3504:-315.28,-29.5009,0	0/1:78:44,33:44:1554:33:1184:-83.3292,0,-116.612	0/1:125:57,67:57:2002:67:2400:-178.678,0,-142.875	0/1:94:59,35:59:2088:35:1243:-83.877,0,-159.893	1/1:84:0,82:0:0:82:2940:-264.518,-24.6845,0	1/1:117:1,115:1:31:115:4116:-367.554,-32.1,0
chr04	1640689	.	T	C	33255	PASS	AB=0.491146;ABP=3.74087;AC=143;AF=0.760638;AN=188;AO=1595;CIGAR=1X;DP=2142;DPB=2142;DPRA=23.0215;EPP=3466.51;EPPR=1190.81;GTI=2;LEN=1;MEANALT=1;MQM=59.5511;MQMR=59.9452;NS=94;NUMALT=1;ODDS=1.06954;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56969;QR=19541;RO=547;RPL=0;RPP=3466.51;RPPR=1190.81;RPR=1595;RUN=1;SAF=0;SAP=3466.51;SAR=1595;SRF=0;SRP=1190.81;SRR=547;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:31:0,31:0:0:31:1116:-100.655,-9.33193,0	1/1:30:0,30:0:0:30:1076:-97.1391,-9.0309,0	1/1:38:0,38:0:0:38:1359:-122.596,-11.4391,0	1/1:5:0,5:0:0:5:180:-16.5474,-1.50515,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	1/1:47:0,47:0:0:47:1684:-151.839,-14.1484,0	0/1:12:7,5:7:252:5:172:-12.2003,0,-19.4166	1/1:24:0,24:0:0:24:851:-76.9071,-7.22472,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:17:0,17:0:0:17:597:-54.0527,-5.11751,0	0/1:29:13,16:13:464:16:576:-43.4384,0,-33.3663	1/1:20:0,20:0:0:20:720:-65.1149,-6.0206,0	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	1/1:23:0,23:0:0:23:828:-74.8408,-6.92369,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:11:3,8:3:108:8:288:-22.9527,0,-6.76384	0/1:52:23,29:23:824:29:1021:-76.5299,0,-58.8298	0/1:26:13,13:13:464:13:459:-33.8173,0,-34.2707	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:16:10,6:10:360:6:216:-14.9717,0,-27.9278	0/1:24:3,21:3:108:21:748:-60.3807,0,-2.85045	0/1:13:10,3:10:345:3:108:-6.16178,0,-27.4674	0/1:92:46,46:46:1656:46:1648:-120.914,0,-121.634	0/1:52:27,25:27:972:25:892:-64.9397,0,-72.1443	1/1:10:0,10:0:0:10:356:-32.3799,-3.0103,0	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9624	0/1:31:14,17:14:489:17:608:-45.7016,0,-35.007	1/1:34:0,34:0:0:34:1218:-109.915,-10.235,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:3:0,3:0:0:3:95:-8.86421,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:52:0,52:0:0:52:1862:-167.689,-15.6536,0	1/1:39:0,39:0:0:39:1374:-123.945,-11.7402,0	1/1:14:0,14:0:0:14:504:-45.6947,-4.21442,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:37:21,16:21:752:16:576:-41.0276,0,-56.8681	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:51:27,24:27:964:24:864:-62.7254,0,-71.7243	0/1:15:5,10:5:180:10:349:-27.2291,0,-12.0366	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:18:9,9:9:309:9:320:-23.7238,0,-22.7222	1/1:21:0,21:0:0:21:741:-66.9804,-6.32163,0	0/1:29:14,15:14:496:15:540:-40.202,0,-36.2444	0/1:26:14,12:14:504:12:424:-30.6696,0,-37.8713	0/1:18:9,9:9:324:9:324:-24.0826,0,-24.0873	1/1:51:0,51:0:0:51:1824:-164.44,-15.3525,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:44:19,25:19:669:25:900:-68.0757,0,-47.2886	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:6:0,6:0:0:6:203:-18.5942,-1.80618,0	1/1:29:0,29:0:0:29:1040:-93.8446,-8.72987,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:6,3:6:208:3:108:-7.3659,0,-16.3498	1/1:18:0,18:0:0:18:625:-56.3244,-5.41854,0	0/1:41:23,18:23:824:18:648:-46.3097,0,-62.1411	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:50:0,50:0:0:50:1791:-161.426,-15.0515,0	0/1:35:20,15:20:716:15:532:-37.677,0,-54.2317	0/1:15:7,8:7:240:8:288:-21.752,0,-17.4192	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:38:23,15:23:809:15:521:-35.7757,0,-61.6892	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:25:0,25:0:0:25:892:-80.595,-7.52575,0	1/1:24:0,24:0:0:24:856:-77.3598,-7.22472,0	0/1:10:4,6:4:144:6:216:-16.7778,0,-10.3033	1/1:21:0,21:0:0:21:756:-68.3605,-6.32163,0	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/1:40:15,25:15:540:25:885:-67.9207,0,-36.5761	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:41:20,21:20:708:21:756:-56.0216,0,-51.7034	0/1:27:20,7:20:720:7:252:-14.8649,0,-57.001	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:19:0,19:0:0:19:684:-61.8811,-5.71957,0	1/1:20:0,20:0:0:20:712:-64.3999,-6.0206,0	1/1:42:0,42:0:0:42:1504:-135.624,-12.6433,0	1/1:38:0,38:0:0:38:1360:-122.7,-11.4391,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:13:0,13:0:0:13:468:-42.4573,-3.91339,0	1/1:41:0,41:0:0:41:1453:-131.062,-12.3422,0	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	1/1:25:0,25:0:0:25:873:-78.8721,-7.52575,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:11:0,11:0:0:11:396:-35.9781,-3.31133,0	0/1:18:8,10:8:288:10:356:-26.9555,0,-20.8489	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:17:0,17:0:0:17:608:-55.0235,-5.11751,0
chr04	1742717	.	CAA	TAG,TAA	622816	PASS	AB=0.556505,0.442085;ABP=298.226,313.134;AC=139,49;AF=0.739362,0.260638;AN=188;AO=18017,5342;CIGAR=1X1M1X,1X2M;DP=23414;DPB=23415.3;DPRA=0,1.04409;EPP=39126.4,11594.3;EPPR=7.35324;GTI=0;LEN=3,1;MEANALT=2.08511,2.44643;MQM=59.718,59.6043;MQMR=60;NS=94;NUMALT=2;ODDS=3.07829;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=72,72;PQR=0;PRO=0;QA=627987,187727;QR=72;RO=2;RPL=6973,1859;RPP=2000.45,1075.08;RPPR=7.35324;RPR=11044,3483;RUN=1,1;SAF=6973,1858;SAP=2000.45,1077.72;SAR=11044,3484;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:87:0,46,41:0:0:46,41:1577,1435:-244.864,-117.061,-103.213,-128.15,0,-115.808	1/1:327:0,327,0:0:0:327,0:11295,0:-1016.17,-98.4368,0,-1016.17,-98.4368,-1016.17	1/1:239:0,238,0:0:0:238,0:8374,0:-753.381,-71.6451,0,-753.381,-71.6451,-753.381	1/1:537:0,535,0:0:0:535,0:18575,0:-1670.81,-161.051,0,-1670.81,-161.051,-1670.81	1/1:176:0,174,1:0:0:174,1:6042,36:-543.378,-52.3792,0,-540.441,-49.3669,-540.14	1/1:148:0,148,0:0:0:148,0:5107,0:-459.431,-44.5524,0,-459.431,-44.5524,-459.431	1/2:296:0,173,121:0:0:173,121:6061,4255:-839.492,-346.34,-294.262,-493.143,0,-456.719	1/1:260:0,258,2:0:0:258,2:8958,72:-805.792,-77.6657,0,-799.917,-71.4311,-799.315	1/2:203:0,129,74:0:0:129,74:4476,2628:-578.172,-214.47,-175.638,-364.053,0,-341.777	1/1:270:0,267,0:0:0:267,0:9291,0:-835.106,-80.375,0,-835.106,-80.375,-835.106	1/1:308:0,307,0:0:0:307,0:10720,0:-964.42,-92.4162,0,-964.42,-92.4162,-964.42	1/1:177:0,177,0:0:0:177,0:6165,0:-554.944,-53.2823,0,-554.944,-53.2823,-554.944	1/2:99:0,63,36:0:0:63,36:2218,1275:-284.761,-104.215,-85.2503,-180.899,0,-170.062	1/1:145:0,145,0:0:0:145,0:5047,0:-454.381,-43.6494,0,-454.381,-43.6494,-454.381	1/2:96:0,51,45:0:0:51,45:1784,1566:-272.821,-127.681,-112.329,-145.488,0,-131.942	1/2:98:0,50,48:0:0:50,48:1757,1663:-278.486,-135.479,-120.428,-143.355,0,-128.905	1/1:146:0,145,0:0:0:145,0:5020,0:-451.611,-43.6494,0,-451.611,-43.6494,-451.611	1/1:118:0,118,0:0:0:118,0:4140,0:-372.787,-35.5215,0,-372.787,-35.5215,-372.787	1/2:234:0,127,107:0:0:127,107:4429,3590:-650.948,-291.096,-252.866,-360.193,0,-327.983	1/2:383:0,228,154:0:0:228,154:8007,5476:-1097.85,-446.171,-377.537,-651.669,0,-605.311	1/2:265:0,155,108:0:0:155,108:5437,3803:-751.941,-309.628,-262.968,-442.353,0,-409.842	1/2:150:0,63,87:0:0:63,87:2205,3112:-433.502,-254.115,-235.15,-179.74,0,-153.55	1/2:153:0,102,50:0:0:102,50:3542,1762:-431.511,-143.59,-112.884,-288.059,0,-273.007	1/1:303:0,292,10:0:0:292,10:10131,356:-911.4,-87.9008,0,-882.389,-58.7941,-879.379	1/2:119:0,68,51:0:0:68,51:2383,1822:-342.306,-148.41,-127.94,-194.25,0,-178.897	1/2:581:0,352,229:0:0:352,229:12206,8125:-1654.29,-662.336,-556.374,-992.304,0,-923.368	1/2:356:0,212,144:0:0:212,144:7441,5104:-1021.6,-416.156,-352.338,-605.793,0,-562.445	1/1:67:0,67,0:0:0:67,0:2337,0:-210.559,-20.169,0,-210.559,-20.169,-210.559	1/2:635:0,344,291:0:0:344,291:11966,10395:-1820.35,-847.858,-744.304,-972.841,0,-885.241	1/2:228:0,112,115:0:0:112,115:3955,4091:-655.176,-333.377,-299.661,-321.794,0,-287.175	1/1:293:0,293,0:0:0:293,0:10136,0:-911.696,-88.2018,0,-911.696,-88.2018,-911.696	2/2:210:0,2,208:0:0:2,208:72,7249:-651.828,-645.953,-645.351,-62.6142,-56.3796,0	1/2:565:0,314,251:0:0:314,251:10898,8780:-1600.39,-714.564,-620.04,-886.171,0,-810.613	1/1:74:0,73,0:0:0:73,0:2541,0:-228.561,-21.9752,0,-228.561,-21.9752,-228.561	1/1:329:0,328,1:0:0:328,1:11309,36:-1016.99,-98.7378,0,-1014.05,-95.4406,-1013.75	1/2:567:0,343,224:0:0:343,224:11873,7735:-1592.7,-628.453,-525.199,-964.596,0,-897.165	1/1:361:0,361,0:0:0:361,0:12634,0:-1136.92,-108.672,0,-1136.92,-108.672,-1136.92	1/1:309:0,309,0:0:0:309,0:10784,0:-970.477,-93.0183,0,-970.477,-93.0183,-970.477	1/1:288:0,288,0:0:0:288,0:10047,0:-903.816,-86.6966,0,-903.816,-86.6966,-903.816	2/2:78:0,5,73:0:0:5,73:178,2551:-229.463,-214.955,-213.45,-21.9752,-7.11169,0	1/2:293:0,176,117:0:0:176,117:6160,4115:-836.354,-335.189,-282.208,-501.516,0,-466.295	1/1:152:0,152,0:0:0:152,0:5358,0:-482.335,-45.7566,0,-482.335,-45.7566,-482.335	1/2:247:0,132,115:0:0:132,115:4582,4038:-701.172,-328.71,-288.974,-372.811,0,-338.192	1/2:126:0,75,51:0:0:75,51:2646,1789:-361.397,-145.938,-123.36,-215.811,0,-200.458	1/1:109:0,109,0:0:0:109,0:3818,0:-343.82,-32.8123,0,-343.82,-32.8123,-343.82	1/2:206:0,121,85:0:0:121,85:4224,3024:-590.372,-246.804,-210.38,-343.921,0,-318.333	1/1:263:0,259,1:0:0:259,1:8988,36:-808.484,-77.9668,0,-805.546,-75.0293,-805.245	1/2:343:0,204,139:0:0:204,139:7155,4930:-984.082,-401.917,-340.506,-582.518,0,-540.675	1/2:151:0,95,56:0:0:95,56:3272,2002:-429.074,-163.32,-134.722,-266.106,0,-249.249	1/2:242:0,144,97:0:0:144,97:5009,3447:-688.297,-281.028,-237.68,-407.409,0,-378.209	1/1:419:0,415,2:0:0:415,2:14430,72:-1298.15,-124.927,0,-1292.27,-119.015,-1291.67	1/2:457:0,271,185:0:0:271,185:9489,6479:-1298.83,-526.796,-445.217,-772.028,0,-716.337	1/2:184:0,97,87:0:0:97,87:3407,3045:-525.345,-248.068,-218.868,-277.628,0,-251.438	1/1:132:0,132,0:0:0:132,0:4645,0:-418.218,-39.736,0,-418.218,-39.736,-418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chr04	1742755	.	T	G	68778.3	PASS	AB=0.47046;ABP=55.0966;AC=49;AF=0.260638;AN=188;AO=3922;CIGAR=1X;DP=15015;DPB=15015;DPRA=1.21686;EPP=8519.53;EPPR=24013;GTI=0;LEN=1;MEANALT=1;MQM=59.2183;MQMR=59.5694;NS=94;NUMALT=1;ODDS=12.1789;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140189;QR=397211;RO=11093;RPL=3922;RPP=8519.53;RPPR=24013;RPR=0;RUN=1;SAF=0;SAP=8519.53;SAR=3922;SRF=0;SRP=24091.2;SRR=11093;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:22,32:22:788:32:1148:-87.3219,0,-54.7886	0/0:225:225,0:225:8076:0:0:0,-67.7317,-725.716	0/0:125:125,0:125:4472:0:0:0,-37.6287,-402.626	0/0:197:197,0:197:7056:0:0:0,-59.3029,-634.063	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.681	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.148	0/1:161:78,83:78:2789:83:2955:-217.655,0,-202.687	0/0:164:162,2:162:5804:2:72:0,-42.5322,-515.523	0/1:114:78,36:78:2789:36:1296:-82.5964,0,-216.735	0/0:145:145,0:145:5204:0:0:0,-43.6493,-468.38	0/0:270:270,0:270:9680:0:0:0,-81.2781,-870.925	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.048	0/1:49:31,18:31:1116:18:644:-43.3494,0,-85.9654	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.992	0/1:45:24,21:24:856:21:756:-54.8193,0,-63.8124	0/1:53:24,29:24:860:29:1023:-76.2828,0,-61.7591	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.159	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.495	0/1:211:111,100:111:3992:100:3567:-257.671,0,-295.538	0/1:148:80,68:80:2857:68:2420:-173.417,0,-212.807	0/1:129:82,47:82:2940:47:1684:-112.977,0,-225.852	0/1:52:19,33:19:684:33:1184:-91.212,0,-46.2268	0/1:69:52,17:52:1856:17:612:-34.6318,0,-146.51	0/0:97:95,2:95:3420:2:72:0,-22.368,-301.167	0/1:71:42,29:42:1504:29:1044:-72.0455,0,-114.27	0/1:225:144,81:144:5152:81:2906:-194.034,0,-396.08	0/1:165:99,66:99:3556:66:2368:-163.559,0,-270.428	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.648	0/1:262:144,118:144:5138:118:4228:-301.81,0,-382.49	0/1:156:74,82:74:2652:82:2910:-215.156,0,-191.682	0/0:161:161,0:161:5748:0:0:0,-48.4658,-516.781	1/1:232:1,231:1:36:231:8252:-738.363,-66.2407,0	0/1:597:314,283:314:11179:283:10100:-728.085,0,-826.214	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.902	0/0:316:315,1:315:11289:1:36:0,-91.5272,-1011.18	0/1:592:343,249:343:12235:249:8916:-623.016,0,-921.48	0/0:170:170,0:170:6108:0:0:0,-51.1751,-549.812	0/0:188:188,0:188:6740:0:0:0,-56.5936,-606.652	0/0:228:228,0:228:8180:0:0:0,-68.6348,-735.506	1/1:84:3,81:3:104:81:2873:-248.948,-15.5837,0	0/1:150:81,69:81:2908:69:2484:-177.156,0,-216.783	0/0:122:122,0:122:4376:0:0:0,-36.7257,-393.976	0/1:124:63,61:63:2241:61:2188:-157.922,0,-164.595	0/1:48:27,21:27:972:21:752:-53.5522,0,-73.3485	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.602	0/1:70:46,24:46:1641:24:852:-55.9274,0,-126.9	0/0:163:163,0:163:5803:0:0:0,-49.0679,-522.065	0/1:175:102,73:102:3656:73:2616:-182.903,0,-276.468	0/1:65:42,23:42:1504:23:824:-54.2827,0,-116.087	0/1:119:68,51:68:2425:51:1828:-128.972,0,-182.681	0/0:171:171,0:171:6132:0:0:0,-51.4761,-551.974	0/1:468:271,197:271:9744:197:7047:-493.039,0,-735.98	0/1:116:57,59:57:2048:59:2104:-154.631,0,-149.644	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.332	0/0:316:316,0:316:11318:0:0:0,-95.1255,-1018.3	0/0:150:150,0:150:5365:0:0:0,-45.1545,-482.751	0/1:34:15,19:15:536:19:684:-51.6553,0,-38.3351	0/0:370:370,0:370:13229:0:0:0,-111.381,-1190.02	0/1:649:387,262:387:13877:262:9369:-647.704,0,-1052.29	0/0:151:151,0:151:5412:0:0:0,-45.4555,-487.184	0/1:94:51,43:51:1815:43:1542:-110.689,0,-135.328	1/1:135:0,135:0:0:135:4835:-435.147,-40.6391,0	0/0:110:110,0:110:3941:0:0:0,-33.1133,-354.821	0/1:182:103,79:103:3677:79:2815:-198.782,0,-276.319	0/1:97:50,47:50:1800:47:1684:-122.631,0,-133.032	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.426	0/1:98:53,45:53:1889:45:1608:-115.5,0,-140.778	0/1:140:40,100:40:1440:100:3578:-279.966,0,-87.7442	0/0:424:424,0:424:15199:0:0:0,-127.637,-1366.6	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.183	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.375	1/1:243:8,235:8:284:235:8413:-730.006,-47.2469,0	0/0:130:130,0:130:4660:0:0:0,-39.1339,-419.515	0/1:73:33,40:33:1176:40:1423:-105.746,0,-84.1726	0/1:378:183,195:183:6530:195:6968:-512.359,0,-473.83	0/0:213:213,0:213:7632:0:0:0,-64.1194,-686.891	0/1:137:68,69:68:2436:69:2444:-178.957,0,-178.252	0/1:110:56,54:56:1989:54:1918:-139.758,0,-145.505	0/0:414:412,2:412:14719:2:68:0,-118.169,-1317.63	0/0:142:142,0:142:5096:0:0:0,-42.7463,-458.757	0/0:126:126,0:126:4519:0:0:0,-37.9298,-406.845	0/0:253:253,0:253:9000:0:0:0,-76.1606,-809.659	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.605	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.608	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.559	0/0:101:101,0:101:3601:0:0:0,-30.404,-324.267	0/1:22:10,12:10:348:12:432:-32.5903,0,-25.0196	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.39	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.189	0/0:377:377,0:377:13531:0:0:0,-113.488,-1217.33	0/1:322:56,266:56:2008:266:9512:-756.484,0,-84.0163	0/1:48:16,32:16:576:32:1135:-87.9506,0,-37.6947	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.662
chr04	1750934	.	GAGG	GAGA,AAGA	45661.1	PASS	AB=0.476647,0.206163;ABP=61.3275,3775.21;AC=91,24;AF=0.484043,0.12766;AN=188;AO=6073,1038;CIGAR=3M1X,1X2M1X;DP=12556;DPB=12556;DPRA=0,4.40907;EPP=13190.4,2257;EPPR=11718.1;GTI=74;LEN=1,4;MEANALT=1.88298,2.36842;MQM=21.8758,21.9297;MQMR=14.0393;NS=94;NUMALT=2;ODDS=0.883262;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=216893,36381;QR=189346;RO=5395;RPL=6072,1038;RPP=13181.7,2257;RPPR=11109.5;RPR=1,0;RUN=1,1;SAF=6072,1038;SAP=13181.7,2257;SAR=1,0;SRF=5324;SRP=11109.5;SRR=71;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:14,40,0:14:499:40,0:1436,0:-62.2721,0,-1.21702,-66.4865,-13.2582,-79.5865	0/1:253:126,126,0:126:4399:126,0:4477,0:-169.47,0,-81.8276,-207.4,-119.757,-327.182	0/1:187:59,127,0:59:2088:127,0:4559,0:-192.656,0,-18.9443,-210.417,-57.1751,-267.584	0/1:277:133,143,1:133:4705:143,1:5113,36:-196.429,0,-82.4415,-234.802,-123.824,-360.031	0/2:131:66,32,33:66:2358:32,33:1144,1166:-34.1292,-0.794211,-55.4439,0,-11.0537,-54.3462	1/2:191:79,65,47:79:2758:65,47:2322,1648:-87.6514,-3.7265,-58.1382,-33.7575,0,-93.5937	0/1:161:45,115,0:45:1576:115,0:4132,0:-178.616,0,-8.04482,-192.162,-42.6633,-234.844	0/1:276:145,130,1:145:5111:130,1:4611,36:-171.706,0,-99.1416,-213.692,-136.611,-351.703	0/1:160:45,115,0:45:1595:115,0:4096,0:-177.249,0,-8.53997,-190.795,-43.1584,-233.792	0/1:129:54,75,0:54:1880:75,0:2665,0:-108.162,0,-28.7466,-124.418,-51.3238,-175.57	0/1:106:54,52,0:54:1864:52,0:1863,0:-69.774,0,-38.5058,-86.0296,-54.1594,-140.008	0/1:127:39,88,0:39:1356:88,0:3126,0:-132.899,0,-12.3239,-144.639,-38.8145,-183.288	0/1:98:32,64,0:32:1145:64,0:2264,0:-95.7285,0,-11.9047,-105.361,-31.1707,-136.562	1/2:94:35,24,34:35:1233:24,34:852,1196:-54.3269,-25.7849,-48.3915,-9.28703,0,-28.8767	1/2:117:51,35,31:51:1819:35,31:1256,1102:-45.3144,-2.89565,-40.9062,-9.25385,0,-48.4713	0/1:111:62,25,23:62:2170:25,23:892,804:-22.8022,0,-51.4526,-3.61958,-21.1114,-55.6744	0/1:82:43,39,0:43:1489:39,0:1384,0:-51.4388,0,-29.9624,-64.3831,-41.7026,-105.905	0/2:79:45,16,18:45:1567:16,18:572,623:-16.1385,-3.08509,-38.5729,0,-13.6799,-34.8827	0/1:89:46,43,0:46:1611:43,0:1548,0:-57.2136,0,-31.6819,-71.061,-44.6262,-115.507	1/2:353:118,126,107:118:4182:126,107:4466,3773:-239.33,-66.8258,-139.486,-97.4722,0,-175.856	0/2:253:136,48,69:136:4752:48,69:1713,2399:-73.1072,-34.748,-148.478,0,-48.8539,-107.403	0/1:57:14,42,0:14:477:42,0:1512,0:-65.7597,0,-0.277523,-69.9741,-12.9208,-82.9386	0/1:125:43,81,0:43:1504:81,0:2881,0:-120.698,0,-16.5695,-133.643,-40.9529,-174.609	1/2:111:31,33,47:31:1052:33,47:1168,1623:-89.3665,-44.8578,-67.5104,-21.2928,0,-39.7261	0/1:168:82,86,0:82:2850:86,0:3050,0:-114.654,0,-51.3294,-139.338,-77.2179,-216.381	0/1:371:162,209,0:162:5666:209,0:7481,0:-294.959,0,-90.8647,-343.726,-153.78,-497.333	0/1:259:108,147,2:108:3819:147,2:5256,72:-209.193,0,-60.3768,-239.264,-102.186,-343.276	0/1:63:20,42,0:20:716:42,0:1504,0:-63.4023,0,-6.43857,-69.4228,-19.0818,-88.5283	0/1:249:79,168,0:79:2782:168,0:6013,0:-253.286,0,-25.1716,-277.067,-75.7446,-352.803	0/1:125:46,78,0:46:1609:78,0:2777,0:-115.223,0,-19.8932,-129.071,-43.3735,-172.456	0/2:168:98,31,39:98:3405:31,39:1116,1373:-34.4146,-12.3364,-95.8547,0,-41.2476,-81.1045	1/1:9:0,9,0:0:0:9,0:320,0:-17.8797,-2.70927,0,-17.8797,-2.70927,-17.8797	0/1:42:20,22,0:20:707:22,0:792,0:-30.8014,0,-12.278,-36.822,-18.9007,-55.5466	1/1:12:2,9,0:2:72:9,0:324,0:-15.2229,-0.841999,0,-15.8249,-2.70927,-17.7252	0/1:14:10,2,2:10:350:2,2:72,71:-0.317418,0,-8.89104,-0.00404533,-6.15625,-8.89491	1/1:31:6,25,0:6:208:25,0:896,0:-41.6387,-1.65648,0,-43.4449,-7.52575,-49.1594	0/1:336:148,188,0:148:5157:188,0:6724,0:-264.279,0,-86.3528,-308.832,-142.946,-451.605	0/1:187:103,84,0:103:3651:84,0:2992,0:-108.317,0,-73.1359,-139.323,-98.4224,-237.563	0/1:139:87,35,17:87:3052:35,17:1247,604:-31.4089,0,-70.6861,-29.8755,-53.486,-105.989	1/2:4:0,1,3:0:0:1,3:36,96:-6.7872,-5.12262,-4.82159,-1.88212,0,-0.979031	0/1:137:59,78,0:59:2107:78,0:2800,0:-111.034,0,-33.6916,-128.794,-57.172,-185.793	0/1:61:14,45,0:14:481:45,0:1620,0:-69.1705,0,-0.332753,-73.3849,-13.8791,-87.3038	0/1:139:49,90,0:49:1719:90,0:3194,0:-133.389,0,-21.7895,-148.139,-48.8822,-196.852	0/1:119:36,82,0:36:1272:82,0:2940,0:-124.953,0,-9.4192,-135.79,-34.1037,-169.91	0/1:122:62,31,28:62:2137:31,28:1112,998:-32.4667,0,-50.562,-4.60067,-13.3413,-56.0683	0/1:139:87,52,0:87:3088:52,0:1845,0:-60.0041,0,-67.1282,-86.1937,-82.7818,-168.788	0/1:197:102,56,39:102:3563:56,39:2008,1362:-61.6253,0,-81.2918,-28.7208,-34.5185,-115.135	0/1:193:68,124,0:68:2391:124,0:4421,0:-182.974,0,-30.6366,-203.444,-67.9643,-271.36	0/1:142:57,84,0:57:1976:84,0:3005,0:-121.837,0,-28.9633,-138.996,-54.2498,-193.205	0/1:141:63,76,1:63:2203:76,1:2708,36:-105.699,0,-40.5984,-123.088,-61.8988,-186.255	0/1:137:67,69,0:67:2333:69,0:2468,0:-93.4844,0,-43.5418,-113.653,-64.3129,-177.919	1/2:14:6,4,4:6:203:4,4:140,138:-5.09539,-0.356052,-5.43574,-0.287424,0,-5.36822	0/1:240:107,132,1:107:3785:132,1:4717,35:-185.604,0,-62.1115,-216.154,-100.187,-317.744	0/1:68:39,29,0:39:1382:29,0:1040,0:-35.7383,0,-28.949,-47.4785,-37.6789,-84.9744	0/2:16:4,2,10:4:143:2,10:72,344:-15.3141,-13.1904,-16.3921,0,-0.419622,-0.763131	1/2:130:46,39,44:46:1610:39,44:1388,1529:-78.9723,-28.9054,-60.9858,-20.1296,0,-50.7034	0/1:106:43,63,0:43:1518:63,0:2237,0:-91.7037,0,-21.6508,-104.648,-40.6157,-145.093	1/2:12:0,8,4:0:0:8,4:273,143:-20.0483,-6.8696,-4.46136,-13.3963,0,-12.1922	1/2:14:4,3,7:4:126:3,7:108,251:-11.7171,-7.92976,-10.7903,-1.27843,0,-2.91829	0/1:135:59,75,1:59:2066:75,1:2688,35:-106.181,0,-34.3977,-122.368,-55.4,-179.075	1/2:131:47,37,46:47:1636:37,46:1332,1613:-78.0153,-31.1306,-66.1384,-14.9224,0,-47.2188	0/1:10:7,3,0:7:245:3,0:108,0:-3.10252,0,-5.92343,-5.20973,-6.82652,-11.8416	0/1:157:60,92,0:60:2115:92,0:3288,0:-135.104,0,-29.1245,-153.166,-56.8193,-210.005	1/2:206:63,56,85:63:2222:56,85:2004,2944:-152.542,-77.7434,-123.352,-31.3392,0,-68.2092	0/1:111:33,74,4:33:1179:74,4:2652,144:-111.46,0,-9.03359,-114.739,-24.646,-144.892	0/1:90:35,55,0:35:1240:55,0:1963,0:-81.0521,0,-16.9542,-91.5881,-33.5108,-124.929	0/2:276:143,66,66:143:5049:66,66:2341,2327:-66.2213,-1.35921,-116.358,0,-26.9339,-115	1/1:122:19,102,1:19:661:102,1:3642,29:-177.701,-13.1664,0,-181.813,-29.093,-199.109	0/1:35:20,15,0:20:718:15,0:540,0:-18.8915,0,-16.6696,-24.9121,-21.1851,-45.9091	1/1:71:10,60,0:10:357:60,0:2148,0:-104.099,-8.56973,0,-107.109,-18.0618,-116.573	1/2:116:45,34,37:45:1565:34,37:1206,1302:-61.156,-19.4705,-51.0917,-13.4102,0,-44.1286	0/1:26:11,14,0:11:389:14,0:500,0:-19.7869,0,-6.6805,-23.0982,-10.8949,-34.111	0/1:169:86,82,0:86:3025:82,0:2911,0:-110.286,0,-57.9491,-136.175,-82.6336,-218.836	0/2:144:70,23,51:70:2429:23,51:824,1773:-63.2543,-47.045,-107.146,0,-29.7131,-51.6614	0/1:393:212,181,0:212:7440:181,0:6465,0:-234.773,0,-148.6,-298.591,-203.086,-501.496	0/1:229:109,119,0:109:3896:119,0:4276,0:-163.114,0,-67.8903,-195.927,-103.713,-299.594	0/1:127:57,70,0:57:2003:70,0:2493,0:-99.07,0,-38.089,-116.229,-59.1611,-175.21	0/1:122:66,56,0:66:2313:56,0:2000,0:-73.261,0,-46.6783,-93.129,-63.5359,-156.483	0/1:20:5,15,0:5:172:15,0:539,0:-23.5796,0,-0.394758,-25.0848,-4.91021,-29.836	0/1:167:78,88,0:78:2739:88,0:3148,0:-121.978,0,-50.1322,-145.458,-76.6229,-222.111	1/2:73:24,24,25:24:835:24,25:856,872:-50.5462,-18.0593,-34.0383,-16.5468,0,-32.2237	0/1:204:96,107,0:96:3358:107,0:3844,0:-148.658,0,-59.926,-177.557,-92.1363,-269.724	0/1:138:64,74,0:64:2219:74,0:2643,0:-102.942,0,-39.4446,-122.208,-61.7208,-183.753	0/1:84:23,59,0:23:826:59,0:2112,0:-90.1571,0,-4.20291,-97.0808,-21.9637,-119.061	0/1:109:52,34,23:52:1846:34,23:1220,805:-40.1951,0,-38.9824,-17.8631,-11.2083,-60.1644	0/1:165:53,111,0:53:1826:111,0:3984,0:-168.09,0,-17.0353,-184.044,-50.4496,-234.509	0/2:37:16,6,15:16:558:6,15:216,528:-19.2189,-13.8784,-26.7729,0,-4.4999,-10.162	0/1:142:64,78,0:64:2242:78,0:2796,0:-109.008,0,-40.0537,-128.274,-63.534,-191.631	0/1:135:64,69,0:64:2244:69,0:2447,0:-94.5396,0,-39.5951,-113.806,-60.3662,-174.203	0/1:65:27,38,0:27:950:38,0:1347,0:-54.559,0,-14.9211,-62.6868,-26.3603,-88.8747	1/2:136:58,40,36:58:2019:40,36:1432,1267:-57.9338,-9.32295,-47.4367,-15.9467,0,-55.2664	1/2:93:23,34,36:23:798:34,36:1220,1284:-87.7038,-38.4298,-49.6463,-34.795,0,-45.4087	0/1:192:92,100,0:92:3240:100,0:3573,0:-136.34,0,-56.87,-164.035,-86.973,-250.833	0/1:201:105,95,0:105:3655:95,0:3387,0:-124.922,0,-71.8538,-156.53,-100.452,-257.01
chr04	1773657	.	C	T	125230	PASS	AB=0.472611;ABP=23.4692;AC=142;AF=0.763441;AN=186;AO=4614;CIGAR=1X;DP=6280;DPB=6280;DPRA=0;EPP=1727.1;EPPR=681.796;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9881;MQMR=59.9747;NS=93;NUMALT=1;ODDS=1.29208;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165445;QR=59278;RO=1663;RPL=946;RPP=3490.02;RPPR=689.348;RPR=3668;RUN=1;SAF=4210;SAP=6820.34;SAR=404;SRF=1661;SRP=3596.82;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:8,31:8:288:31:1094:-87.0278,0,-14.5272	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:93:0,93:0:0:93:3339:-300.718,-27.9958,0	1/1:106:0,106:0:0:106:3808:-342.916,-31.9092,0	1/1:110:0,110:0:0:110:3939:-354.701,-33.1133,0	1/1:105:0,105:0:0:105:3745:-337.244,-31.6082,0	0/1:109:60,49:60:2139:49:1764:-126.231,0,-159.965	1/1:120:0,120:0:0:120:4312:-388.255,-36.1236,0	0/1:63:37,26:37:1320:26:932:-65.234,0,-100.137	1/1:71:1,69:1:36:69:2479:-219.765,-17.8337,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:42:22,20:22:792:20:716:-52.1245,0,-58.9624	1/1:54:0,53:0:0:53:1900:-171.065,-15.9546,0	0/1:52:27,25:27:972:25:900:-65.6675,0,-72.1443	0/1:39:19,20:19:684:20:720:-53.3886,0,-50.1502	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:20:7,13:7:230:13:468:-36.439,0,-15.0006	0/1:109:68,41:68:2440:41:1476:-100.324,0,-185.68	0/1:143:69,74:69:2456:74:2652:-195.879,0,-178.248	0/1:91:68,23:68:2432:23:820:-46.7288,0,-191.742	0/1:64:21,43:21:752:43:1544:-119.987,0,-48.7403	1/1:62:2,60:2:72:60:2151:-187.02,-11.8271,0	0/1:34:23,11:23:824:11:396:-25.7477,0,-64.2483	0/1:176:104,72:104:3715:72:2588:-180.187,0,-281.57	0/1:163:92,71:92:3277:71:2544:-180.143,0,-246.081	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:174:102,72:102:3651:72:2567:-178.9,0,-276.414	0/1:100:53,47:53:1891:47:1688:-122.104,0,-140.365	1/1:85:0,85:0:0:85:3043:-274.099,-25.5876,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:154:0,154:0:0:154:5532:-498.003,-46.3586,0	1/1:88:0,88:0:0:88:3147:-283.447,-26.4906,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	.:.:.:.:.:.:.:.	0/1:97:45,52:45:1596:52:1872:-139.559,0,-114.73	1/1:28:0,28:0:0:28:1000:-90.3148,-8.42884,0	0/1:95:31,64:31:1108:64:2304:-179.023,0,-71.433	0/1:58:32,26:32:1128:26:932:-66.7391,0,-84.3658	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:56:41,15:41:1451:15:540:-32.0789,0,-114.028	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:103:49,54:49:1735:54:1931:-143.032,0,-125.428	0/1:92:53,39:53:1892:39:1391:-97.7935,0,-142.864	0/1:108:53,55:53:1884:55:1980:-145.963,0,-137.327	1/1:132:0,132:0:0:132:4736:-426.397,-39.736,0	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.5363	0/1:78:40,38:40:1427:38:1364:-99.5804,0,-105.246	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:80:1,79:1:36:79:2840:-252.231,-20.4841,0	0/1:34:13,21:13:464:21:756:-58.1322,0,-31.8625	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	0/1:14:9,5:9:320:5:172:-11.603,0,-24.9279	1/1:49:1,48:1:36:48:1724:-151.847,-11.1522,0	0/1:97:43,54:43:1522:54:1944:-146.036,0,-108.072	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:143:0,143:0:0:143:5136:-462.38,-43.0473,0	0/1:93:53,40:53:1873:40:1436:-101.542,0,-140.851	0/1:44:21,23:21:748:23:819:-60.7862,0,-54.4	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:95:49,46:49:1744:46:1641:-119.379,0,-128.647	0/1:60:44,16:44:1568:16:575:-34.0229,0,-123.35	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:72:0,72:0:0:72:2575:-231.999,-21.6742,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	0/1:17:7,10:7:243:10:360:-27.6268,0,-17.09	1/1:77:0,77:0:0:77:2769:-249.451,-23.1793,0	0/1:91:45,46:45:1599:46:1656:-121.935,0,-116.806	0/1:145:83,62:83:2954:62:2208:-155.335,0,-222.444	1/1:108:0,108:0:0:108:3880:-349.393,-32.5112,0	0/1:102:34,67:34:1220:67:2397:-185.261,0,-79.3817	0/1:79:34,45:34:1216:45:1616:-121.949,0,-85.9652	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:77:0,77:0:0:77:2754:-248.101,-23.1793,0	1/1:161:0,161:0:0:161:5784:-520.663,-48.4658,0	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:43:0,43:0:0:43:1524:-137.451,-12.9443,0	1/1:120:0,120:0:0:120:4302:-387.355,-36.1236,0	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	1/1:71:0,71:0:0:71:2526:-227.591,-21.3731,0	1/1:52:1,51:1:36:51:1836:-161.922,-12.0553,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:35:16,19:16:572:19:684:-51.3543,0,-41.2774	0/1:57:40,17:40:1427:17:608:-37.8933,0,-111.568	1/1:86:2,84:2:72:84:3012:-264.474,-19.0519,0	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0
chr04	1773662	.	AAC	AAG,TAG	146000	PASS	AB=0.465566,0.52999;ABP=35.4611,27.627;AC=142,44;AF=0.763441,0.236559;AN=186;AO=4584,1675;CIGAR=2M1X,1X1M1X;DP=6279;DPB=6279.33;DPRA=0,1.11715;EPP=9913.66,3622.88;EPPR=0;GTI=1;LEN=1,3;MEANALT=1.69892,2.22917;MQM=59.9915,59.9946;MQMR=0;NS=93;NUMALT=2;ODDS=1.84119;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=163693,59232;QR=0;RO=0;RPL=4189,1671;RPP=6821.75,3605.57;RPPR=0;RPR=395,4;RUN=1,1;SAF=4194,1673;SAP=6857.75,3622.88;SAR=390,2;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:37:0,29,8:0:0:29,8:1016,275:-105.35,-22.6756,-13.9457,-83.0191,0,-80.6108	1/1:89:0,89,0:0:0:89,0:3204,0:-288.582,-26.7917,0,-288.582,-26.7917,-288.582	1/1:95:0,95,0:0:0:95,0:3389,0:-305.216,-28.5979,0,-305.216,-28.5979,-305.216	1/1:105:0,105,0:0:0:105,0:3768,0:-339.318,-31.6082,0,-339.318,-31.6082,-339.318	1/1:109:0,109,0:0:0:109,0:3872,0:-348.615,-32.8123,0,-348.615,-32.8123,-348.615	1/1:105:0,105,0:0:0:105,0:3665,0:-330.052,-31.6082,0,-330.052,-31.6082,-330.052	1/2:110:0,49,60:0:0:49,60:1730,2145:-315.851,-174.974,-160.224,-140.95,0,-122.888	1/1:117:0,117,0:0:0:117,0:4162,0:-374.764,-35.2205,0,-374.764,-35.2205,-374.764	1/2:63:0,26,36:0:0:26,36:932,1275:-179.872,-103.856,-96.0294,-76.0123,0,-65.1752	1/1:71:0,70,1:0:0:70,1:2487,36:-223.722,-21.0721,0,-220.784,-17.7749,-220.483	1/1:36:0,36,0:0:0:36,0:1296,0:-116.944,-10.8371,0,-116.944,-10.8371,-116.944	1/1:39:0,39,0:0:0:39,0:1385,0:-124.947,-11.7402,0,-124.947,-11.7402,-124.947	1/2:42:0,20,22:0:0:20,22:716,785:-122.742,-64.3518,-58.3312,-58.7471,0,-52.1245	1/1:54:0,54,0:0:0:54,0:1931,0:-174.066,-16.2556,0,-174.066,-16.2556,-174.066	1/2:53:0,25,28:0:0:25,28:900,987:-154.152,-80.7132,-73.1875,-73.7953,0,-65.3664	1/2:39:0,20,19:0:0:20,19:712,682:-114.019,-55.9903,-49.9697,-58.3861,0,-52.6665	1/1:49:0,49,0:0:0:49,0:1749,0:-157.692,-14.7505,0,-157.692,-14.7505,-157.692	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/2:20:0,13,7:0:0:13,7:468,246:-58.5669,-20.3749,-16.4615,-38.5463,0,-36.439	1/2:110:0,42,67:0:0:42,67:1503,2357:-314.598,-192.032,-179.389,-122.732,0,-102.563	1/2:144:0,74,69:0:0:74,69:2633,2437:-413.138,-198.552,-176.276,-214.679,0,-193.907	1/2:90:0,22,67:0:0:22,67:792,2363:-257.023,-192.398,-185.775,-64.6232,0,-44.4542	1/2:62:0,41,21:0:0:41,21:1453,754:-180.23,-61.8652,-49.523,-118.722,0,-112.4	1/1:63:0,61,2:0:0:61,2:2179,72:-196.016,-18.3628,0,-190.141,-12.1282,-189.539	1/2:34:0,12,22:0:0:12,22:423,761:-96.6257,-62.1831,-58.5707,-34.7927,0,-28.17	1/2:176:0,70,106:0:0:70,106:2504,3755:-510.426,-306.242,-285.17,-204.541,0,-172.631	1/2:164:0,71,93:0:0:71,93:2533,3287:-474.544,-268.053,-246.68,-206.847,0,-178.851	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:173:0,70,103:0:0:70,103:2516,3646:-502.602,-297.339,-276.267,-205.619,0,-174.613	1/2:99:0,46,53:0:0:46,53:1648,1898:-289.547,-155.143,-141.296,-134.761,0,-118.807	1/1:82:0,82,0:0:0:82,0:2929,0:-263.843,-24.6845,0,-263.843,-24.6845,-263.843	1/2:10:0,4,6:0:0:4,6:144,214:-29.5526,-17.8016,-16.5975,-12.1095,0,-10.3033	1/2:7:0,5,2:0:0:5,2:176,72:-20.557,-6.23466,-4.72951,-14.6799,0,-14.0778	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:8:0,3,5:0:0:3,5:108,170:-22.9486,-14.1288,-13.2257,-9.17208,0,-7.66693	1/1:153:0,152,0:0:0:152,0:5441,0:-489.457,-45.7566,0,-489.457,-45.7566,-489.457	1/1:88:0,88,0:0:0:88,0:3130,0:-281.926,-26.4906,0,-281.926,-26.4906,-281.926	1/1:33:0,32,0:0:0:32,0:1148,0:-103.289,-9.63296,0,-103.289,-9.63296,-103.289	.:.:.:.:.:.:.:.	1/2:97:0,51,46:0:0:51,46:1832,1641:-283.582,-134.132,-118.779,-149.808,0,-135.961	1/1:29:0,28,0:0:0:28,0:1008,0:-90.6765,-8.42884,0,-90.6765,-8.42884,-90.6765	1/2:91:0,59,31:0:0:59,31:2098,1084:-259.15,-88.1746,-70.4138,-170.968,0,-161.636	1/2:59:0,27,32:0:0:27,32:968,1145:-172.678,-93.7269,-85.5991,-79.3096,0,-69.6766	1/1:56:0,56,0:0:0:56,0:1989,0:-179.282,-16.8577,0,-179.282,-16.8577,-179.282	1/2:55:0,14,41:0:0:14,41:495,1468:-160.388,-120.074,-115.86,-40.6686,0,-28.3264	1/1:32:0,32,0:0:0:32,0:1152,0:-103.99,-9.63296,0,-103.99,-9.63296,-103.99	1/2:106:0,54,52:0:0:54,52:1909,1789:-301.113,-145.633,-129.377,-155.829,0,-140.176	1/2:92:0,37,54:0:0:37,54:1332,1896:-262.989,-154.301,-143.163,-108.684,0,-92.4288	1/2:108:0,53,54:0:0:53,54:1899,1897:-309.348,-154.469,-138.514,-154.952,0,-138.696	1/1:128:0,126,0:0:0:126,0:4504,0:-405.215,-37.9298,0,-405.215,-37.9298,-405.215	1/2:8:0,4,4:0:0:4,4:144,136:-23.1305,-11.3708,-10.1667,-12.1095,0,-10.9054	1/2:79:0,38,41:0:0:38,41:1360,1448:-229.179,-118.273,-106.834,-111.261,0,-98.9192	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	1/1:27:0,27,0:0:0:27,0:957,0:-86.4439,-8.12781,0,-86.4439,-8.12781,-86.4439	1/1:81:0,80,1:0:0:80,1:2848,36:-256.197,-24.0824,0,-253.259,-20.7852,-252.958	1/2:34:0,20,14:0:0:20,14:720,502:-100.052,-41.3028,-35.2822,-59.1082,0,-54.8938	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,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chr04	1855811	.	TGT	AGG,AGT	154028	PASS	AB=0.513776,0.482467;ABP=8.27513,11.5385;AC=141,43;AF=0.766304,0.233696;AN=184;AO=5600,1547;CIGAR=1X1M1X,1X2M;DP=7167;DPB=7167;DPRA=0,1.0258;EPP=12033.3,3301.75;EPPR=5.18177;GTI=2;LEN=3,1;MEANALT=1.69565,2.19149;MQM=59.9445,59.9716;MQMR=60;NS=92;NUMALT=2;ODDS=0.631194;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=197347,55508;QR=27;RO=1;RPL=15,7;RPP=12033.3,3301.75;RPPR=5.18177;RPR=5585,1540;RUN=1,1;SAF=5600,1547;SAP=12163.3,3362.28;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,7,18:0:0:7,18:250,648:-73.332,-52.9492,-50.842,-20.4499,0,-15.0313	1/1:85:0,85,0:0:0:85,0:2995,0:-269.782,-25.5876,0,-269.782,-25.5876,-269.782	1/1:50:0,49,0:0:0:49,0:1747,0:-157.231,-14.7505,0,-157.231,-14.7505,-157.231	1/1:82:0,82,0:0:0:82,0:2887,0:-260.048,-24.6845,0,-260.048,-24.6845,-260.048	1/1:11:0,11,0:0:0:11,0:384,0:-34.8943,-3.31133,0,-34.8943,-3.31133,-34.8943	1/1:29:0,29,0:0:0:29,0:1039,0:-93.8241,-8.72987,0,-93.8241,-8.72987,-93.8241	1/2:93:0,38,55:0:0:38,55:1349,1972:-271.112,-161.198,-149.759,-110.27,0,-93.7137	1/1:92:0,92,0:0:0:92,0:3282,0:-295.6,-27.6948,0,-295.6,-27.6948,-295.6	1/2:65:0,42,23:0:0:42,23:1479,828:-188.324,-67.9204,-55.2772,-120.76,0,-113.837	1/1:47:0,47,0:0:0:47,0:1664,0:-150.045,-14.1484,0,-150.045,-14.1484,-150.045	1/1:89:0,88,0:0:0:88,0:3110,0:-279.276,-26.4906,0,-279.276,-26.4906,-279.276	1/1:108:0,107,0:0:0:107,0:3754,0:-337.701,-32.2102,0,-337.701,-32.2102,-337.701	1/2:98:0,45,53:0:0:45,53:1556,1908:-282.47,-156.043,-142.497,-126.779,0,-110.825	1/1:137:0,137,0:0:0:137,0:4852,0:-436.813,-41.2411,0,-436.813,-41.2411,-436.813	1/2:117:0,62,55:0:0:62,55:2170,1976:-338.102,-161.558,-142.894,-176.899,0,-160.342	1/2:86:0,40,46:0:0:40,46:1412,1655:-250.369,-135.391,-123.35,-115.334,0,-101.486	1/1:109:0,109,0:0:0:109,0:3831,0:-344.988,-32.8123,0,-344.988,-32.8123,-344.988	1/1:96:0,96,0:0:0:96,0:3376,0:-304.055,-28.8989,0,-304.055,-28.8989,-304.055	1/2:52:0,32,19:0:0:32,19:1135,684:-148.279,-55.8109,-46.178,-92.4657,0,-86.7461	1/2:42:0,20,22:0:0:20,22:696,784:-120.762,-64.2613,-58.2407,-56.8524,0,-50.2298	1/2:65:0,30,35:0:0:30,35:1070,1256:-190.033,-102.809,-93.7783,-87.5809,0,-77.0449	1/2:45:0,26,19:0:0:26,19:936,684:-132.544,-56.1708,-48.344,-76.7327,0,-71.0131	1/2:56:0,24,32:0:0:24,32:835,1152:-162.245,-94.3572,-87.1325,-68.2411,0,-58.6081	1/1:72:0,70,2:0:0:70,2:2445,72:-219.946,-21.0721,0,-214.071,-14.8374,-213.469	1/2:46:0,26,20:0:0:26,20:920,720:-134.033,-59.1,-51.2732,-75.2897,0,-69.2691	1/2:185:0,91,93:0:0:91,93:3222,3344:-535.272,-272.82,-245.427,-262.449,0,-234.453	1/2:140:0,74,66:0:0:74,66:2582,2366:-403.327,-193.33,-171.054,-210.351,0,-190.483	1/1:57:0,57,0:0:0:57,0:2029,0:-182.882,-17.1587,0,-182.882,-17.1587,-182.882	1/2:134:0,80,54:0:0:80,54:2815,1936:-387.412,-158.261,-134.178,-229.507,0,-213.251	1/2:83:0,41,40:0:0:41,40:1429,1413:-231.312,-115.103,-102.76,-116.239,0,-104.197	1/1:106:0,104,2:0:0:104,2:3622,72:-325.818,-31.3071,0,-319.943,-25.0725,-319.34	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/1:9:0,9,0:0:0:9,0:299,0:-27.2329,-2.70927,0,-27.2329,-2.70927,-27.2329	1/1:6:0,6,0:0:0:6,0:208,0:-19.0585,-1.80618,0,-19.0585,-1.80618,-19.0585	.:.:.:.:.:.:.:.	1/1:275:0,274,0:0:0:274,0:9655,0:-868.631,-82.4822,0,-868.631,-82.4822,-868.631	1/1:97:0,97,0:0:0:97,0:3454,0:-311.071,-29.1999,0,-311.071,-29.1999,-311.071	1/1:115:0,114,0:0:0:114,0:4053,0:-364.747,-34.3174,0,-364.747,-34.3174,-364.747	.:.:.:.:.:.:.:.	1/2:65:0,38,26:0:0:38,26:1318,936:-183.602,-76.4787,-65.0396,-107.223,0,-99.3966	1/1:35:0,35,0:0:0:35,0:1241,0:-111.993,-10.5361,0,-111.993,-10.5361,-111.993	1/2:74:0,39,35:0:0:39,35:1383,1256:-215.481,-102.809,-91.0691,-113.028,0,-102.492	1/2:109:0,68,40:0:0:68,40:2408,1440:-313.556,-117.41,-96.9404,-196.144,0,-184.102	1/1:70:0,70,0:0:0:70,0:2449,0:-220.663,-21.0721,0,-220.663,-21.0721,-220.663	1/2:55:0,29,26:0:0:29,26:1039,919:-159.938,-75.1994,-66.4695,-85.0946,0,-77.2678	1/1:45:0,45,0:0:0:45,0:1591,0:-143.479,-13.5464,0,-143.479,-13.5464,-143.479	1/2:102:0,61,41:0:0:61,41:2150,1476:-295.754,-120.708,-102.345,-175.403,0,-163.06	1/2:87:0,35,52:0:0:35,52:1216,1868:-251.597,-152.746,-142.21,-99.2029,0,-83.5494	1/2:86:0,38,48:0:0:38,48:1325,1724:-248.749,-140.996,-129.557,-108.106,0,-93.657	1/1:89:0,89,0:0:0:89,0:3117,0:-280.757,-26.7917,0,-280.757,-26.7917,-280.757	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/2:50:0,29,21:0:0:29,21:1026,756:-145.611,-62.0456,-53.3157,-83.9225,0,-77.6008	1/2:27:0,12,15:0:0:12,15:425,532:-78.3181,-43.6976,-40.0853,-34.9747,0,-30.4592	1/1:5:0,5,0:0:0:5,0:165,0:-15.1736,-1.50515,0,-15.1736,-1.50515,-15.1736	1/1:55:0,55,0:0:0:55,0:1953,0:-176.045,-16.5567,0,-176.045,-16.5567,-176.045	1/2:34:0,22,10:0:0:22,10:772,360:-92.1952,-29.3742,-22.7515,-62.8186,0,-59.8083	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:20:0,10,10:0:0:10,10:358,360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chr04	1855832	.	T	G	25314.3	PASS	AB=0.48653;ABP=7.92432;AC=43;AF=0.233696;AN=184;AO=1522;CIGAR=1X;DP=6990;DPB=6990;DPRA=1.01035;EPP=3204.58;EPPR=11454.5;GTI=2;LEN=1;MEANALT=1.06522;MQM=59.9488;MQMR=59.9674;NS=92;NUMALT=1;ODDS=0.227822;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53887;QR=194528;RO=5460;RPL=1510;RPP=3204.58;RPPR=11420.4;RPR=12;RUN=1;SAF=1522;SAP=3307.99;SAR=0;SRF=5456;SRP=11824.5;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:8,19:8:288:19:671:-52.588,0,-18.1396	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.136	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:82:82,0:82:2931:0:0:0,-24.6845,-263.94	0/0:10:10,0:10:342:0:0:0,-3.0103,-31.109	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:93:38,55:38:1364:55:1961:-148.768,0,-95.0649	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/1:61:38,23:38:1360:23:828:-56.4813,0,-104.338	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	0/0:85:85,0:85:3025:0:0:0,-25.5875,-272.48	0/0:106:106,0:106:3737:0:0:0,-31.9092,-336.531	0/1:94:44,50:44:1564:50:1779:-132.095,0,-112.755	0/0:133:132,0:132:4720:0:0:0,-39.736,-424.64	0/1:116:61,54:61:2175:54:1869:-133.505,0,-161.038	0/1:83:38,44:38:1355:44:1554:-115.105,0,-97.2055	0/0:108:108,0:108:3842:0:0:0,-32.5112,-345.977	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.584	0/1:50:33,17:33:1167:17:612:-40.3619,0,-90.2849	0/1:40:18,22:18:648:22:788:-58.8321,0,-46.6107	0/1:64:30,34:30:1063:34:1198:-88.8581,0,-76.7149	0/1:45:26,19:26:932:19:671:-47.1694,0,-70.6525	0/1:53:23,30:23:828:30:1055:-79.3054,0,-58.8895	0/0:68:66,2:66:2344:2:68:0,-14.0123,-204.76	0/1:42:25,17:25:888:17:604:-42.0392,0,-67.5958	0/1:188:92,96:92:3300:96:3425:-251.869,0,-240.624	0/1:136:68,65:68:2444:65:2292:-166.156,0,-179.831	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.24	0/1:131:77,54:77:2760:54:1932:-134.722,0,-209.207	0/1:80:42,38:42:1503:38:1322:-95.1939,0,-111.481	0/0:104:102,2:102:3612:2:72:0,-24.4704,-318.445	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:268:268,0:268:9530:0:0:0,-80.676,-857.66	0/0:95:95,0:95:3363:0:0:0,-28.5978,-302.886	0/0:113:113,0:113:4047:0:0:0,-34.0164,-364.417	.:.:.:.:.:.:.:.	0/1:64:37,27:37:1316:27:954:-66.907,0,-99.474	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:73:37,36:37:1332:36:1284:-93.8882,0,-98.2072	0/1:106:67,39:67:2400:39:1352:-90.0576,0,-184.337	0/0:67:67,0:67:2371:0:0:0,-20.169,-213.649	0/1:52:28,24:28:999:24:856:-61.7075,0,-74.5709	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:101:59,42:59:2103:42:1486:-103.543,0,-159.135	0/1:88:35,53:35:1252:53:1883:-143.257,0,-86.4944	0/1:82:34,48:34:1211:48:1692:-127.879,0,-84.6111	0/0:86:86,0:86:3059:0:0:0,-25.8886,-275.537	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:49:29,20:29:1044:20:716:-50.0172,0,-79.5243	0/1:28:12,16:12:423:16:561:-42.3892,0,-29.9762	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:34:22,12:22:788:12:432:-28.9862,0,-61.0098	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:19:10,9:10:360:9:315:-22.9677,0,-27.0247	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:171:97,74:97:3484:74:2625:-185.02,0,-262.28	0/1:6:5,1:5:165:1:36:-1.79209,0,-13.3674	0/0:105:105,0:105:3706:0:0:0,-31.6081,-333.74	0/1:142:74,68:74:2655:68:2403:-173.781,0,-196.412	0/1:51:24,27:24:836:27:959:-71.2729,0,-60.2022	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/1:103:48,55:48:1713:55:1972:-146.749,0,-123.448	0/1:52:15,37:15:531:37:1317:-103.176,0,-32.4683	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:127:126,0:126:4501:0:0:0,-37.9298,-404.042	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:83:82,0:82:2904:0:0:0,-24.6845,-261.235	0/1:45:26,19:26:923:19:667:-46.8083,0,-69.8404	0/1:91:48,43:48:1716:43:1524:-110.059,0,-127.332	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:66:36,30:36:1283:30:1067:-76.4732,0,-95.8965	0/1:55:36,19:36:1292:19:651:-42.3514,0,-100.027	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:54:54,0:54:1898:0:0:0,-16.2556,-171.097	0/0:52:52,0:52:1840:0:0:0,-15.6536,-165.878	0/0:217:217,0:217:7763:0:0:0,-65.3235,-698.693	0/0:150:150,0:150:5367:0:0:0,-45.1545,-483.162	0/0:96:96,0:96:3383:0:0:0,-28.8989,-304.684	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.484	0/0:223:222,1:222:7889:1:36:0,-63.5314,-706.441	0/1:61:27,34:27:964:34:1212:-91.0235,0,-68.714	0/0:90:90,0:90:3172:0:0:0,-27.0927,-285.703	0/0:102:102,0:102:3615:0:0:0,-30.7051,-325.556	0/0:101:101,0:101:3591:0:0:0,-30.404,-323.373	0/1:156:86,70:86:3040:70:2465:-175.142,0,-226.838	0/1:93:30,63:30:1068:63:2217:-171.796,0,-68.4363	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/0:152:152,0:152:5448:0:0:0,-45.7566,-490.439
chr04	1856087	.	T	C	64607.8	PASS	AB=0.499553;ABP=3.01418;AC=139;AF=0.755435;AN=184;AO=3116;CIGAR=1X;DP=4236;DPB=4236;DPRA=0;EPP=6682.74;EPPR=2409.07;GTI=1;LEN=1;MEANALT=1;MQM=59.9583;MQMR=59.9705;NS=92;NUMALT=1;ODDS=0.503528;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110391;QR=38911;RO=1120;RPL=10;RPP=6682.74;RPPR=2409.07;RPR=3106;RUN=1;SAF=0;SAP=6769.32;SAR=3116;SRF=0;SRP=2435.06;SRR=1120;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:18,19:18:613:19:676:-50.0283,0,-44.3505	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:109:0,109:0:0:109:3878:-349.216,-32.8123,0	1/1:64:0,64:0:0:64:2247:-202.491,-19.2659,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	1/1:44:0,44:0:0:44:1563:-140.961,-13.2453,0	0/1:60:35,25:35:1189:25:874:-60.9134,0,-89.248	1/1:40:0,40:0:0:40:1426:-128.636,-12.0412,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:51:0,51:0:0:51:1791:-161.472,-15.3525,0	0/1:53:33,20:33:1163:20:696:-47.0078,0,-89.0215	1/1:33:0,33:0:0:33:1144:-103.263,-9.93399,0	0/1:57:28,29:28:988:29:1032:-76.0348,0,-72.0752	0/1:50:22,28:22:767:28:982:-73.6402,0,-54.2979	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:16:12,4:12:424:4:144:-8.49714,0,-33.6799	0/1:52:19,33:19:656:33:1163:-89.3216,0,-43.7086	0/1:100:50,50:50:1727:50:1769:-129.388,0,-125.608	0/1:20:17,3:17:596:3:108:-4.05457,0,-47.9472	0/1:48:25,23:25:876:23:801:-57.9581,0,-63.8491	0/1:55:11,44:11:380:44:1563:-124.404,0,-17.9753	0/1:27:9,18:9:312:18:640:-49.8015,0,-20.2875	0/1:116:52,64:52:1790:64:2280:-170.543,0,-126.459	0/1:74:38,36:38:1333:36:1269:-92.2354,0,-97.9916	1/1:23:0,23:0:0:23:806:-72.8582,-6.92369,0	0/1:148:86,62:86:2960:62:2195:-153.263,0,-222.082	0/1:57:21,36:21:744:36:1269:-97.352,0,-50.1256	1/1:59:0,59:0:0:59:2096:-188.908,-17.7608,0	0/1:14:12,2:12:405:2:72:-2.6223,0,-32.5586	0/1:24:13,11:13:448:11:392:-28.3953,0,-33.4242	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:212:-19.4201,-1.80618,0	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	1/1:139:1,138:1:36:138:4868:-434.452,-38.2449,0	1/1:62:0,62:0:0:62:2197:-197.995,-18.6639,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	.:.:.:.:.:.:.:.	0/1:51:35,16:35:1227:16:576:-36.8225,0,-95.3805	1/1:24:0,24:0:0:24:840:-75.9161,-7.22472,0	0/1:45:19,26:19:662:26:932:-70.6525,0,-46.3561	0/1:31:15,16:15:523:16:568:-42.1199,0,-38.0665	1/1:35:0,35:0:0:35:1235:-111.453,-10.5361,0	0/1:56:24,32:24:836:32:1136:-85.6912,0,-58.6998	1/1:35:0,35:0:0:35:1229:-110.684,-10.5361,0	0/1:64:25,39:25:880:39:1396:-106.673,0,-60.2518	0/1:80:42,38:42:1471:38:1336:-96.4575,0,-108.601	0/1:36:19,17:19:650:17:612:-44.5764,0,-47.9818	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:93:43,50:43:1527:50:1767:-131.317,0,-109.727	0/1:40:19,21:19:652:21:740:-54.8822,0,-46.9598	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:57:0,57:0:0:57:2023:-182.342,-17.1587,0	0/1:20:11,9:11:384:9:320:-23.1218,0,-28.8741	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:43:0,43:0:0:43:1503:-135.561,-12.9443,0	0/1:82:44,38:44:1541:38:1347:-96.845,0,-114.295	.:.:.:.:.:.:.:.	1/1:101:0,101:0:0:101:3595:-323.757,-30.404,0	0/1:61:21,40:21:728:40:1436:-111.175,0,-47.4749	0/1:31:14,17:14:500:17:608:-45.7201,0,-36.0042	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	0/1:70:36,34:36:1228:34:1203:-87.5021,0,-89.7459	0/1:61:40,21:40:1400:21:744:-48.9215,0,-107.932	1/1:37:0,37:0:0:37:1292:-116.578,-11.1381,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:45:0,45:0:0:45:1574:-141.949,-13.5464,0	0/1:17:9,8:9:312:8:288:-21.1499,0,-23.2978	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/1:57:32,25:32:1107:25:892:-63.441,0,-82.7772	0/1:74:44,30:44:1499:30:1055:-72.9838,0,-112.922	1/1:92:0,92:0:0:92:3254:-293.083,-27.6948,0	0/1:18:11,7:11:383:7:252:-17.6104,0,-29.3847	0/1:45:24,21:24:809:21:743:-53.647,0,-59.5742	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:103:0,103:0:0:103:3640:-327.806,-31.0061,0	1/1:44:0,44:0:0:44:1520:-137.088,-13.2453,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:63:0,63:0:0:63:2232:-201.143,-18.9649,0	0/1:23:9,14:9:316:14:491:-37.5974,0,-21.8552	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:34:0,34:0:0:34:1207:-108.932,-10.235,0	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	0/1:84:37,47:37:1294:47:1647:-123.182,0,-91.473	0/1:50:35,15:35:1219:15:532:-33.1607,0,-94.9611	1/1:83:0,83:0:0:83:2937:-264.479,-24.9855,0	1/1:71:0,71:0:0:71:2521:-227.142,-21.3731,0
chr04	1856104	.	CAA	TAT,CAT	93853.6	PASS	AB=0.497416,0.500431;ABP=3.14496,3.01404;AC=139,45;AF=0.755435,0.244565;AN=184;AO=3254,1162;CIGAR=1X1M1X,2M1X;DP=4430;DPB=4430;DPRA=0,1.15047;EPP=6982.39,2500.27;EPPR=0;GTI=1;LEN=3,1;MEANALT=1.6413,2.11111;MQM=59.933,59.9716;MQMR=0;NS=92;NUMALT=2;ODDS=0.526446;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=114453,41607;QR=0;RO=0;RPL=10,3;RPP=6982.39,2500.27;RPPR=0;RPR=3244,1159;RUN=1,1;SAF=0,0;SAP=7068.98,2526.26;SAR=3254,1162;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,20,18:0:0:20,18:695,644:-109.369,-52.8721,-46.8515,-56.85,0,-51.4315	1/1:28:0,28,0:0:0:28,0:972,0:-87.7893,-8.42884,0,-87.7893,-8.42884,-87.7893	1/1:117:0,116,0:0:0:116,0:4086,0:-367.57,-34.9195,0,-367.57,-34.9195,-367.57	1/1:70:0,70,0:0:0:70,0:2445,0:-220.233,-21.0721,0,-220.233,-21.0721,-220.233	1/2:10:0,9,1:0:0:9,1:318,36:-29.1897,-3.29724,-0.587975,-26.2517,0,-25.9506	1/1:8:0,8,0:0:0:8,0:286,0:-26.0855,-2.40824,0,-26.0855,-2.40824,-26.0855	1/2:11:0,7,4:0:0:7,4:240,144:-31.5832,-12.1095,-10.0023,-19.8273,0,-18.6232	1/1:47:0,47,0:0:0:47,0:1642,0:-148.066,-14.1484,0,-148.066,-14.1484,-148.066	1/2:61:0,25,36:0:0:25,36:869,1292:-176.394,-105.747,-98.2209,-70.999,0,-60.162	1/1:41:0,41,0:0:0:41,0:1456,0:-131.335,-12.3422,0,-131.335,-12.3422,-131.335	1/1:41:0,41,0:0:0:41,0:1466,0:-132.237,-12.3422,0,-132.237,-12.3422,-132.237	1/1:60:0,60,0:0:0:60,0:2122,0:-191.237,-18.0618,0,-191.237,-18.0618,-191.237	1/2:57:0,22,35:0:0:22,35:782,1241:-165.182,-101.456,-94.8338,-64.0804,0,-53.5443	1/1:35:0,35,0:0:0:35,0:1228,0:-110.822,-10.5361,0,-110.822,-10.5361,-110.822	1/2:58:0,29,29:0:0:29,29:1032,1040:-169.291,-85.1845,-76.4546,-84.4633,0,-75.7334	1/2:53:0,29,23:0:0:29,23:1023,828:-150.994,-67.6948,-58.9649,-83.4283,0,-76.5046	1/1:26:0,26,0:0:0:26,0:906,0:-81.8525,-7.82678,0,-81.8525,-7.82678,-81.8525	1/1:20:0,20,0:0:0:20,0:710,0:-64.2267,-6.0206,0,-64.2267,-6.0206,-64.2267	1/2:17:0,4,13:0:0:4,13:142,464:-49.7539,-38.1841,-36.98,-11.9251,0,-8.0117	1/2:55:0,33,22:0:0:33,22:1159,788:-158.949,-64.6221,-54.6881,-94.6817,0,-88.059	1/2:105:0,52,52:0:0:52,52:1834,1864:-301.486,-152.153,-136.5,-149.455,0,-133.801	1/2:22:0,5,17:0:0:5,17:154,612:-62.6357,-50.2959,-48.7908,-12.6595,0,-7.542	1/2:50:0,23,27:0:0:23,27:788,956:-141.333,-77.3678,-70.4441,-64.3112,0,-56.1834	1/2:55:0,44,11:0:0:44,11:1555,396:-159.309,-32.6714,-19.4261,-126.996,0,-123.684	1/2:29:0,20,9:0:0:20,9:707,324:-84.3734,-26.7966,-20.776,-57.9347,0,-55.2254	1/2:121:0,66,55:0:0:66,55:2319,1961:-348.956,-160.207,-140.339,-189.103,0,-172.546	1/2:84:0,41,43:0:0:41,43:1448,1540:-243.866,-125.949,-113.607,-118.273,0,-105.328	1/1:24:0,24,0:0:0:24,0:852,0:-77,-7.22472,0,-77,-7.22472,-77	1/2:153:0,62,91:0:0:62,91:2171,3253:-442.206,-265.596,-246.932,-176.963,0,-149.569	1/2:61:0,38,23:0:0:38,23:1328,828:-175.944,-67.9204,-56.4813,-108.379,0,-101.456	1/1:61:0,60,0:0:0:60,0:2100,0:-188.906,-18.0618,0,-188.906,-18.0618,-188.906	1/2:13:0,2,11:0:0:2,11:72,396:-38.5463,-32.6714,-32.0694,-6.23466,0,-2.92333	1/2:25:0,11,14:0:0:11,14:390,504:-73.2546,-41.4837,-38.1723,-32.1277,0,-27.9133	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:6:0,5,0:0:0:5,0:176,0:-15.8933,-1.50515,0,-15.8933,-1.50515,-15.8933	1/2:8:0,5,3:0:0:5,3:176,108:-23.4953,-9.17208,-7.66693,-14.6801,0,-13.777	1/1:147:0,147,0:0:0:147,0:5159,0:-464.027,-44.2514,0,-464.027,-44.2514,-464.027	1/1:65:0,65,0:0:0:65,0:2266,0:-204.2,-19.567,0,-204.2,-19.567,-204.2	1/1:30:0,30,0:0:0:30,0:1050,0:-94.8089,-9.0309,0,-94.8089,-9.0309,-94.8089	.:.:.:.:.:.:.:.	1/2:51:0,16,35:0:0:16,35:564,1241:-147.377,-101.456,-96.64,-46.2735,0,-35.7374	1/1:25:0,25,0:0:0:25,0:865,0:-78.1639,-7.52575,0,-78.1639,-7.52575,-78.1639	1/2:48:0,29,19:0:0:29,19:1030,680:-139.737,-55.8096,-47.0797,-84.2837,0,-78.5641	1/2:31:0,16,15:0:0:16,15:574,540:-91.2397,-44.4211,-39.6046,-47.1778,0,-42.6624	1/1:37:0,37,0:0:0:37,0:1302,0:-117.481,-11.1381,0,-117.481,-11.1381,-117.481	1/2:58:0,32,26:0:0:32,26:1115,936:-167.401,-76.7327,-67.0997,-91.0225,0,-83.1957	1/1:35:0,34,0:0:0:34,0:1197,0:-107.776,-10.235,0,-107.776,-10.235,-107.776	1/2:67:0,41,26:0:0:41,26:1455,932:-194.918,-76.3721,-64.0298,-118.903,0,-111.076	1/2:85:0,40,45:0:0:40,45:1395,1620:-245.994,-132.544,-120.502,-113.804,0,-100.258	1/2:38:0,18,20:0:0:18,20:623,712:-109.009,-58.3861,-52.9675,-50.9734,0,-44.9528	1/1:61:0,61,0:0:0:61,0:2136,0:-192.507,-18.3628,0,-192.507,-18.3628,-192.507	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:96:0,52,43:0:0:52,43:1825,1548:-274.831,-126.309,-110.655,-148.518,0,-135.573	1/2:41:0,21,20:0:0:21,20:750,720:-120.254,-59.1082,-52.7865,-61.5045,0,-55.4839	1/1:7:0,7,0:0:0:7,0:249,0:-22.7555,-2.10721,0,-22.7555,-2.10721,-22.7555	1/1:63:0,63,0:0:0:63,0:2201,0:-198.354,-18.9649,0,-198.354,-18.9649,-198.354	1/2:21:0,10,11:0:0:10,11:350,396:-61.1437,-32.6714,-29.6611,-28.8269,0,-25.5156	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/2:12:0,9,3:0:0:9,3:324,108:-35.6088,-9.17208,-6.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chr04	1884854	.	C	A	15319	PASS	AB=0.534426;ABP=21.8487;AC=46;AF=0.244681;AN=188;AO=986;CIGAR=1X;DP=3460;DPB=3460;DPRA=1.29274;EPP=2144.08;EPPR=5362.21;GTI=2;LEN=1;MEANALT=1.04167;MQM=44.7617;MQMR=59.8738;NS=94;NUMALT=1;ODDS=0.966612;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34331;QR=86375;RO=2472;RPL=986;RPP=2144.08;RPPR=5362.21;RPR=0;RUN=1;SAF=986;SAP=2144.08;SAR=0;SRF=2470;SRP=5353.53;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:13,21:13:455:21:718:-54.0959,0,-31.0184	0/0:30:30,0:30:1035:0:0:0,-9.0309,-93.4528	0/0:60:60,0:60:2117:0:0:0,-18.0618,-190.797	0/0:48:48,0:48:1697:0:0:0,-14.4494,-153.012	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.267	0/0:24:24,0:24:839:0:0:0,-7.22472,-75.7711	0/1:25:7,18:7:234:18:636:-47.7135,0,-13.8603	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/1:47:22,25:22:770:25:867:-62.2859,0,-55.4709	0/0:40:39,1:39:1344:1:32:0,-8.84189,-118.03	0/0:37:37,0:37:1300:0:0:0,-11.1381,-116.11	0/0:40:40,0:40:1393:0:0:0,-12.0412,-125.347	0/1:44:27,17:27:938:17:596:-40.2071,0,-71.4865	0/0:27:27,0:27:933:0:0:0,-8.12781,-84.2793	0/1:31:20,11:20:691:11:383:-25.0395,0,-53.1784	0/1:46:19,27:19:647:27:929:-68.6644,0,-44.6987	0/0:17:17,0:17:571:0:0:0,-5.11751,-51.7054	0/0:12:12,0:12:404:0:0:0,-3.61236,-36.6734	0/1:13:8,5:8:288:5:180:-12.4562,0,-22.354	0/1:37:16,21:16:549:21:736:-54.611,0,-38.5943	0/1:79:26,53:26:901:53:1854:-140.748,0,-57.5972	0/1:53:20,33:20:697:33:1140:-85.1882,0,-47.0961	0/1:55:32,23:32:1144:23:820:-56.024,0,-86.7129	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/1:30:9,21:9:311:21:714:-54.876,0,-19.2928	0/1:79:40,39:40:1413:39:1356:-96.3832,0,-103.683	0/1:98:42,56:42:1481:56:1963:-145.246,0,-104.081	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/1:85:48,37:48:1695:37:1289:-88.464,0,-127.248	0/1:33:16,17:16:568:17:577:-41.7247,0,-41.5179	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.988	1/1:5:0,5:0:0:5:172:-15.6428,-1.50515,0	0/1:17:8,8:8:260:8:275:-19.531,0,-18.5483	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:11:11,0:11:353:0:0:0,-3.31133,-32.079	0/1:9:3,6:3:108:6:212:-16.4844,0,-7.3659	0/0:90:90,0:90:3121:0:0:0,-27.0927,-281.112	0/0:82:82,0:82:2883:0:0:0,-24.6845,-259.702	0/0:29:29,0:29:1004:0:0:0,-8.72987,-90.6676	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:35:17,18:17:608:18:623:-45.2075,0,-44.516	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3756	0/1:72:33,39:33:1156:39:1325:-96.4737,0,-82.6695	0/1:21:10,11:10:352:11:383:-28.0498,0,-25.6966	0/0:32:32,0:32:1080:0:0:0,-9.63296,-97.4965	0/1:24:14,10:14:482:10:352:-24.2635,0,-36.4813	0/0:34:34,0:34:1206:0:0:0,-10.235,-108.844	0/1:51:28,23:28:978:23:816:-57.0233,0,-72.9786	0/1:42:18,24:18:629:24:856:-63.578,0,-44.0989	0/1:36:12,24:12:409:24:848:-64.845,0,-26.2984	0/0:57:57,0:57:2023:0:0:0,-17.1587,-182.342	0/1:3:2,1:2:68:1:32:-2.27568,0,-5.55462	0/1:68:36,31:36:1276:31:1097:-77.1022,0,-94.6548	0/1:32:17,15:17:600:15:516:-36.4853,0,-44.6962	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:61:61,0:61:2133:0:0:0,-18.3628,-192.235	0/1:17:10,7:10:348:7:252:-17.593,0,-26.5006	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/1:6:3,3:3:108:3:104:-7.50042,0,-8.26899	0/0:41:41,0:41:1438:0:0:0,-12.3422,-129.665	0/1:43:21,22:21:747:22:771:-55.4473,0,-54.61	0/1:4:3,1:3:108:1:36:-2.3444,0,-8.87105	0/0:36:36,0:36:1265:0:0:0,-10.8371,-114.149	0/1:91:41,50:41:1440:50:1729:-125.958,0,-102.499	0/1:29:14,15:14:487:15:524:-37.8618,0,-35.4293	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/1:64:39,25:39:1381:25:858:-57.3695,0,-105.32	0/1:87:30,57:30:1068:57:1964:-148.139,0,-70.2401	0/0:19:19,0:19:656:0:0:0,-5.71957,-59.3548	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:17:17,0:17:585:0:0:0,-5.11751,-52.9719	0/1:5:4,1:4:140:1:36:-2.04337,0,-11.4394	0/0:40:40,0:40:1396:0:0:0,-12.0412,-125.934	0/1:60:24,36:24:848:36:1252:-93.4466,0,-58.5779	0/1:29:10,19:10:352:19:657:-50.0342,0,-23.2883	0/0:47:47,0:47:1656:0:0:0,-14.1484,-149.325	0/1:44:18,26:18:607:26:916:-68.6849,0,-41.6923	0/1:50:18,32:18:633:32:1127:-85.2655,0,-42.2436	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:60:59,1:59:2059:1:36:0,-14.5133,-182.028	0/0:44:44,0:44:1522:0:0:0,-13.2453,-137.25	0/0:52:51,1:51:1775:1:36:0,-12.0553,-156.385	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5512	0/0:16:16,0:16:540:0:0:0,-4.81648,-48.9182	0/0:50:50,0:50:1683:0:0:0,-15.0515,-151.745	0/1:13:8,5:8:275:5:157:-10.399,0,-21.1701	0/0:31:31,0:31:1068:0:0:0,-9.33193,-96.4247	0/0:41:41,0:41:1416:0:0:0,-12.3422,-127.732	0/0:27:27,0:27:946:0:0:0,-8.12781,-85.4529	0/1:59:33,26:33:1142:26:915:-63.8607,0,-85.3125	0/1:30:11,19:11:388:19:664:-50.3051,0,-26.2265	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5109	0/0:46:46,0:46:1542:0:0:0,-13.8474,-139.052
chr04	1884867	.	A	T	19452.2	PASS	AB=0.580597;ABP=116.419;AC=47;AF=0.25;AN=188;AO=1179;CIGAR=1X;DP=3669;DPB=3669;DPRA=1.29704;EPP=2563.18;EPPR=5401.29;GTI=4;LEN=1;MEANALT=1;MQM=44.7523;MQMR=59.9004;NS=94;NUMALT=1;ODDS=0.357499;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41786;QR=88637;RO=2490;RPL=1179;RPP=2563.18;RPPR=5392.62;RPR=0;RUN=1;SAF=1179;SAP=2563.18;SAR=0;SRF=2487;SRP=5383.95;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:12,28:12:428:28:983:-75.8131,0,-26.8176	0/0:32:32,0:32:1134:0:0:0,-9.63296,-102.367	0/0:62:62,0:62:2182:0:0:0,-18.6639,-196.645	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.273	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:25:5,20:5:180:20:693:-52.6503,0,-9.02631	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:53:22,31:22:788:31:1108:-81.8728,0,-55.2902	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.509	0/0:39:39,0:39:1388:0:0:0,-11.7402,-124.028	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:50:30,20:30:1063:20:720:-49.3743,0,-80.9283	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6172	0/1:35:21,14:21:730:14:496:-33.8593,0,-55.4834	0/1:52:19,33:19:667:33:1171:-88.1834,0,-44.7011	0/0:16:16,0:16:558:0:0:0,-4.81648,-50.5465	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7352	0/1:14:9,5:9:324:5:180:-12.1552,0,-25.2914	0/1:45:16,29:16:572:29:1029:-78.1595,0,-38.2671	0/1:84:24,60:24:856:60:2120:-163.072,0,-52.0512	0/1:58:19,39:19:680:39:1366:-103.155,0,-44.0691	0/1:56:31,25:31:1099:25:889:-62.3577,0,-82.3618	0/0:28:27,1:27:959:1:36:0,-4.88032,-83.0769	0/1:40:10,30:10:360:30:1063:-82.7346,0,-20.7031	0/1:92:40,52:40:1432:52:1860:-135.892,0,-101.482	0/1:106:43,63:43:1527:63:2240:-167.054,0,-105.813	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/1:93:45,48:45:1604:48:1709:-123.436,0,-116.654	0/1:42:16,26:16:572:26:905:-67.5454,0,-39.1702	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	1/1:10:0,10:0:0:10:356:-31.6616,-3.0103,0	0/1:15:7,8:7:252:8:279:-20.5224,0,-18.5135	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:11:3,8:3:108:8:284:-22.297,0,-6.76384	0/0:93:93,0:93:3323:0:0:0,-27.9958,-298.585	0/0:81:81,0:81:2867:0:0:0,-24.3834,-258.269	0/0:30:30,0:30:1060:0:0:0,-9.0309,-95.7113	0/1:2:1,1:1:36:1:36:-2.94646,0,-2.99621	0/1:40:17,23:17:608:23:824:-61.4427,0,-43.0108	0/0:24:24,0:24:836:0:0:0,-7.22472,-75.5547	0/1:79:33,46:33:1188:46:1644:-122.031,0,-83.4472	0/1:21:10,11:10:360:11:396:-29.1635,0,-26.4227	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/1:28:14,14:14:504:14:496:-35.8259,0,-37.2693	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:55:28,27:28:1004:27:957:-68.2867,0,-74.1192	0/1:42:17,25:17:608:25:883:-65.552,0,-42.217	0/1:45:13,32:13:464:32:1139:-87.6633,0,-28.5512	0/0:64:64,0:64:2275:0:0:0,-19.2659,-205.012	0/1:3:2,1:2:72:1:36:-2.64543,0,-5.93363	0/1:71:35,36:35:1244:36:1281:-92.5786,0,-90.8915	0/1:35:17,18:17:603:18:640:-46.4459,0,-44.0635	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.983	0/1:19:10,9:10:360:9:311:-22.2621,0,-26.9378	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:6:3,3:3:108:3:104:-7.30698,0,-8.26899	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.794	0/1:45:22,23:22:784:23:816:-58.8129,0,-57.3376	0/1:5:3,2:3:108:2:72:-5.23703,0,-8.57002	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/1:99:39,60:39:1400:60:2135:-159.174,0,-96.4972	0/1:33:15,18:15:531:18:635:-46.4305,0,-38.1879	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/1:67:37,30:37:1324:30:1062:-74.4505,0,-99.2931	0/1:101:30,71:30:1072:71:2502:-191.874,0,-66.3875	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5245	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:4:3,1:3:108:1:36:-2.3444,0,-8.87105	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:61:25,36:25:896:36:1288:-95.8362,0,-62.5975	0/1:28:10,18:10:356:18:639:-48.6825,0,-23.9524	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/1:48:17,31:17:612:31:1061:-80.4174,0,-40.964	0/1:53:18,35:18:635:35:1243:-94.656,0,-41.5224	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:62:61,1:61:2152:1:36:0,-15.1153,-190.397	0/0:42:42,0:42:1455:0:0:0,-12.6433,-131.241	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.294	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7897	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/1:13:8,5:8:279:5:180:-12.0561,0,-21.5341	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/0:44:44,0:44:1558:0:0:0,-13.2453,-140.509	0/0:28:28,0:28:986:0:0:0,-8.42884,-89.0522	0/1:62:33,29:33:1184:29:1032:-73.3501,0,-88.2045	0/1:34:11,23:11:383:23:815:-62.4413,0,-24.5682	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1505	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487
chr04	1884874	.	C	A	19182.8	PASS	AB=0.579425;ABP=111.666;AC=47;AF=0.25;AN=188;AO=1159;CIGAR=1X;DP=3612;DPB=3612;DPRA=1.30113;EPP=2519.75;EPPR=5316.61;GTI=4;LEN=1;MEANALT=1.02083;MQM=44.7558;MQMR=59.9139;NS=94;NUMALT=1;ODDS=0.224684;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41184;QR=86160;RO=2451;RPL=1159;RPP=2519.75;RPPR=5316.61;RPR=0;RUN=1;SAF=1159;SAP=2519.75;SAR=0;SRF=2449;SRP=5307.93;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:11,28:11:384:28:991:-76.7928,0,-23.1545	0/0:32:31,0:31:1093:0:0:0,-9.33193,-98.3181	0/0:58:58,0:58:2037:0:0:0,-17.4597,-183.601	0/0:48:48,0:48:1684:0:0:0,-14.4494,-151.841	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7675	0/1:27:7,20:7:237:20:716:-53.7226,0,-13.5312	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/1:56:23,33:23:824:33:1176:-87.0154,0,-57.6256	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.095	0/0:36:36,0:36:1283:0:0:0,-10.8371,-114.581	0/0:38:38,0:38:1339:0:0:0,-11.4391,-120.809	0/1:47:27,20:27:944:20:716:-49.9375,0,-71.1229	0/0:26:26,0:26:916:0:0:0,-7.82678,-82.7565	0/1:34:20,14:20:684:14:504:-34.8311,0,-51.6415	0/1:48:16,32:16:555:32:1135:-86.1937,0,-35.8266	0/0:14:14,0:14:471:0:0:0,-4.21442,-42.7115	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9736	0/1:13:8,5:8:284:5:176:-12.1107,0,-21.99	0/1:43:15,28:15:532:28:986:-74.9534,0,-35.2688	0/1:89:25,64:25:844:64:2266:-174.198,0,-49.4746	0/1:56:19,37:19:667:37:1304:-98.4182,0,-43.496	0/1:57:32,25:32:1135:25:897:-62.2786,0,-85.2994	0/0:27:26,1:26:917:1:36:0,-4.57929,-79.2961	0/1:36:9,27:9:307:27:968:-75.4529,0,-17.1232	0/1:91:40,51:40:1406:51:1807:-131.964,0,-99.4411	0/1:107:43,64:43:1525:64:2255:-168.092,0,-105.331	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:97:49,48:49:1752:48:1720:-122.795,0,-128.764	0/1:40:15,25:15:523:25:870:-65.4768,0,-35.3573	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	1/1:8:0,8:0:0:8:288:-25.3953,-2.40824,0	0/1:14:7,7:7:244:7:252:-18.4101,0,-18.085	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:10:10,0:10:339:0:0:0,-3.0103,-30.8375	0/1:10:3,7:3:108:7:248:-19.429,0,-7.06487	0/0:91:91,0:91:3188:0:0:0,-27.3937,-286.441	0/0:81:81,0:81:2864:0:0:0,-24.3834,-257.992	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:2:1,1:1:36:1:32:-2.57671,0,-2.99621	0/1:39:17,22:17:604:22:784:-58.2155,0,-42.9504	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/1:81:35,46:35:1220:46:1622:-119.785,0,-85.7124	0/1:20:10,10:10:352:10:356:-25.9344,0,-25.9976	0/0:32:32,0:32:1122:0:0:0,-9.63296,-101.286	0/1:27:14,13:14:504:13:464:-33.2733,0,-37.5703	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:54:29,25:29:1023:25:892:-62.8258,0,-76.1261	0/1:45:19,26:19:653:26:919:-67.8429,0,-45.1712	0/1:44:13,31:13:468:31:1116:-85.6669,0,-29.2143	0/0:63:63,0:63:2196:0:0:0,-18.9649,-197.902	0/1:3:2,1:2:72:1:36:-2.64543,0,-5.93363	0/1:69:34,35:34:1201:35:1260:-91.2959,0,-87.6226	0/1:32:16,16:16:533:16:572:-41.3121,0,-38.6505	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:60:60,0:60:2105:0:0:0,-18.0618,-189.714	0/1:19:10,9:10:352:9:324:-23.3783,0,-26.2116	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.028	0/1:6:3,3:3:108:3:108:-7.64548,0,-8.26899	0/0:41:41,0:41:1426:0:0:0,-12.3422,-128.627	0/1:43:21,22:21:744:22:779:-56.1162,0,-54.34	0/1:5:3,2:3:108:2:72:-5.23703,0,-8.57002	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/1:97:41,56:41:1427:56:2000:-147.775,0,-99.5223	0/1:29:14,15:14:491:15:540:-39.4898,0,-35.7912	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/1:66:35,30:35:1237:30:1059:-74.4025,0,-91.7057	0/1:103:31,72:31:1100:72:2553:-195.704,0,-68.3019	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8022	0/0:14:14,0:14:472:0:0:0,-4.21442,-42.8	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:5:4,1:4:144:1:36:-2.04337,0,-11.8085	0/0:39:39,0:39:1357:0:0:0,-11.7402,-122.426	0/1:59:22,37:22:780:37:1307:-98.1831,0,-52.7623	0/1:28:8,20:8:288:20:708:-54.8855,0,-17.8386	0/0:47:47,0:47:1644:0:0:0,-14.1484,-148.245	0/1:44:15,29:15:540:29:1027:-78.5312,0,-35.6912	0/1:52:17,35:17:604:35:1252:-95.7372,0,-39.037	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:62:61,1:61:2129:1:36:0,-15.1153,-188.327	0/0:41:41,0:41:1401:0:0:0,-12.3422,-126.381	0/0:51:51,0:51:1797:0:0:0,-15.3525,-161.964	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3385	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:52:52,0:52:1817:0:0:0,-15.6536,-163.809	0/1:13:8,5:8:284:5:176:-11.7106,0,-21.99	0/0:31:31,0:31:1080:0:0:0,-9.33193,-97.5058	0/0:40:40,0:40:1381:0:0:0,-12.0412,-124.585	0/0:28:28,0:28:986:0:0:0,-8.42884,-89.0522	0/1:60:32,28:32:1122:28:1000:-71.0924,0,-83.2245	0/1:34:10,24:10:347:24:843:-64.9666,0,-21.3286	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8582	0/0:46:46,0:46:1591:0:0:0,-13.8474,-143.476
chr04	1893199	.	C	T	26450.4	PASS	AB=0.505002;ABP=3.68367;AC=47;AF=0.25;AN=188;AO=1573;CIGAR=1X;DP=6003;DPB=6003;DPRA=1.17185;EPP=3410.06;EPPR=9605.27;GTI=0;LEN=1;MEANALT=1;MQM=55.1545;MQMR=59.4542;NS=94;NUMALT=1;ODDS=2.51992;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55918;QR=158424;RO=4430;RPL=12;RPP=3315.3;RPPR=9484.16;RPR=1561;RUN=1;SAF=11;SAP=3323.86;SAR=1562;SRF=16;SRP=9484.16;SRR=4414;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:15,21:15:536:21:741:-56.1202,0,-37.733	0/0:95:95,0:95:3394:0:0:0,-28.5978,-305.636	0/0:91:91,0:91:3257:0:0:0,-27.3937,-292.916	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.256	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.072	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.64	0/1:75:21,54:21:752:54:1913:-149.439,0,-45.4267	0/0:77:77,0:77:2747:0:0:0,-23.1793,-247.354	0/1:90:47,43:47:1679:43:1540:-111.386,0,-124.301	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.48	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.186	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.336	0/1:64:36,28:36:1277:28:1004:-71.3304,0,-95.9381	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.485	0/1:62:27,35:27:968:35:1260:-94.9497,0,-68.7735	0/1:45:24,21:24:860:21:750:-54.162,0,-64.1721	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.477	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:29:16,13:16:572:13:459:-32.5661,0,-42.9757	0/1:126:64,62:64:2292:62:2189:-158.733,0,-168.384	0/1:136:75,61:75:2666:61:2142:-150.775,0,-199.117	0/1:58:11,47:11:392:47:1676:-132.932,0,-18.1294	0/1:106:59,47:59:2112:47:1669:-118.322,0,-157.641	0/0:54:50,4:50:1800:4:140:0,-3.36521,-149.383	0/1:78:48,30:48:1720:30:1072:-72.7672,0,-131.531	0/1:195:96,99:96:3440:99:3532:-259.162,0,-251.032	0/1:104:56,48:56:2008:48:1712:-121.969,0,-149.67	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.4125	0/1:147:74,73:74:2637:73:2584:-188.371,0,-193.164	0/1:64:43,21:43:1532:21:737:-47.3353,0,-118.906	0/0:88:88,0:88:3122:0:0:0,-26.4906,-281.158	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	0/1:18:7,11:7:248:11:388:-29.8125,0,-17.2429	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.72502	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:9:6,3:6:216:3:108:-7.35863,0,-17.0812	0/0:119:119,0:119:4271:0:0:0,-35.8226,-384.129	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.02	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.416	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:81:43,38:43:1524:38:1364:-98.5735,0,-112.845	0/0:30:30,0:30:1058:0:0:0,-9.0309,-95.5112	0/1:109:56,53:56:2004:53:1862:-134.761,0,-147.763	0/1:40:17,23:17:604:23:824:-62.3697,0,-42.6471	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.652	0/1:83:39,44:39:1396:44:1557:-115.098,0,-100.951	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.719	0/1:87:40,47:40:1414:47:1668:-123.982,0,-101.364	0/1:33:6,27:6:216:27:956:-76.3488,0,-9.85414	0/1:66:25,41:25:896:41:1449:-110.593,0,-61.09	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.334	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	0/1:123:58,65:58:2072:65:2312:-170.729,0,-149.721	0/1:60:34,26:34:1211:26:936:-66.2691,0,-91.1275	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:112:112,0:112:4015:0:0:0,-33.7154,-361.428	0/1:23:13,10:13:464:10:356:-25.2684,0,-35.1715	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:9:6,3:6:216:3:108:-7.35261,0,-17.0789	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.02	0/1:82:32,50:32:1148:50:1788:-134.647,0,-78.8846	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/0:83:82,1:82:2935:1:36:0,-21.3898,-260.732	0/1:99:56,43:56:2007:43:1518:-106.903,0,-151.046	0/1:58:28,30:28:1008:30:1072:-79.2571,0,-73.4328	0/0:45:45,0:45:1597:0:0:0,-13.5463,-143.983	0/1:128:68,60:68:2444:60:2140:-153.983,0,-181.671	0/1:55:17,38:17:612:38:1338:-103.969,0,-38.8568	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.156	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/1:22:14,8:14:504:8:284:-19.2178,0,-39.0754	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.126	0/1:43:25,18:25:896:18:614:-42.3879,0,-68.0114	0/1:126:71,55:71:2552:55:1963:-138.677,0,-191.985	0/0:118:118,0:118:4201:0:0:0,-35.5215,-377.922	0/1:123:59,64:59:2124:64:2292:-167.763,0,-154.395	0/1:52:25,27:25:883:27:972:-72.081,0,-64.1292	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5497	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.223	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.415	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.176	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.437	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.825	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.4023	0/0:82:82,0:82:2921:0:0:0,-24.6845,-263.058	0/1:13:5,8:5:176:8:277:-21.314,0,-12.2716	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.287	0/0:61:61,0:61:2167:0:0:0,-18.3628,-195.285	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.636	0/1:91:47,44:47:1684:44:1584:-114.323,0,-124.445	0/1:48:23,25:23:828:25:888:-65.7352,0,-60.39	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.027	0/0:78:78,0:78:2786:0:0:0,-23.4803,-250.388
chr04	1905007	.	G	A	59875.7	PASS	AB=0.517715;ABP=19.0897;AC=47;AF=0.25;AN=188;AO=3067;CIGAR=1X;DP=11532;DPB=11532;DPRA=1.17499;EPP=3297.14;EPPR=9547.38;GTI=0;LEN=1;MEANALT=1.01852;MQM=40.6609;MQMR=59.9505;NS=94;NUMALT=1;ODDS=3.38562;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110078;QR=302477;RO=8463;RPL=2612;RPP=3297.14;RPPR=9541.12;RPR=455;RUN=1;SAF=3067;SAP=6662.92;SAR=0;SRF=8462;SRP=18371.5;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:25,16:25:884:16:572:-36.218,0,-67.5361	0/0:132:132,0:132:4707:0:0:0,-39.736,-423.791	0/0:167:167,0:167:5969:0:0:0,-50.272,-537.316	0/0:280:279,1:279:9933:1:36:0,-80.7857,-890.316	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:145:67,78:67:2389:78:2794:-200.311,0,-171.616	0/0:136:136,0:136:4828:0:0:0,-40.9401,-434.676	0/1:126:63,63:63:2264:63:2260:-152.951,0,-166.093	0/0:130:130,0:130:4624:0:0:0,-39.1339,-416.1	0/0:116:116,0:116:4142:0:0:0,-34.9195,-372.959	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.078	0/1:117:59,58:59:2108:58:2088:-141.066,0,-154.769	0/0:161:161,0:161:5762:0:0:0,-48.4658,-518.694	0/1:96:40,56:40:1440:56:2016:-146.113,0,-100.999	0/1:94:38,56:38:1368:56:2004:-144.767,0,-95.124	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:83:83,0:83:2966:0:0:0,-24.9855,-267.172	0/1:79:34,45:34:1215:45:1620:-112.273,0,-85.8744	0/1:116:41,75:41:1455:75:2695:-199.649,0,-95.3047	0/1:161:74,87:74:2626:87:3132:-221.403,0,-188.119	0/1:61:23,38:23:828:38:1368:-102.431,0,-56.4813	0/1:101:48,53:48:1704:53:1904:-136.13,0,-123.241	0/1:103:89,14:89:3181:14:504:-12.3444,0,-255.506	0/1:55:22,33:22:788:33:1184:-85.8377,0,-54.6881	0/1:468:255,213:255:9109:213:7646:-531.447,0,-678.83	0/1:262:131,131:131:4683:131:4708:-326.314,0,-342.761	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:211:96,115:96:3432:115:4128:-300.021,0,-245.577	0/1:223:110,113:110:3937:113:4060:-279.338,0,-287.391	0/0:235:235,0:235:8400:0:0:0,-70.742,-755.734	0/1:5:2,3:2:72:3:108:-8.16742,0,-5.33157	0/1:17:8,9:8:284:9:320:-22.9193,0,-20.7858	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/1:18:7,11:7:248:11:396:-28.4575,0,-17.2457	0/0:275:273,1:273:9769:1:36:0,-79.2438,-875.557	0/0:194:194,0:194:6940:0:0:0,-58.3998,-624.506	0/0:162:161,1:161:5741:1:36:0,-45.1686,-513.209	0/1:8:4,4:4:140:4:144:-9.64708,0,-10.5363	0/1:194:102,92:102:3664:92:3304:-224.37,0,-271.563	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:132:66,66:66:2356:66:2368:-162.775,0,-172.563	0/1:102:41,61:41:1472:61:2192:-160.888,0,-102.071	0/0:88:87,0:87:3115:0:0:0,-26.1896,-280.346	0/1:75:33,42:33:1180:42:1504:-109.474,0,-83.9308	0/0:130:130,0:130:4645:0:0:0,-39.1339,-418.211	0/1:221:95,126:95:3416:126:4498:-326.482,0,-241.123	0/1:108:48,60:48:1719:60:2152:-156.088,0,-122.479	0/1:195:96,99:96:3427:99:3556:-251.882,0,-249.943	0/0:117:117,0:117:4162:0:0:0,-35.2205,-374.676	0/1:24:12,12:12:428:12:432:-30.9109,0,-31.6341	0/1:190:95,95:95:3379:95:3396:-228.761,0,-246.744	0/1:37:14,23:14:500:23:813:-61.1125,0,-34.1981	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:158:158,0:158:5661:0:0:0,-47.5627,-509.607	0/1:36:20,16:20:716:16:576:-40.021,0,-53.9306	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:39:19,20:19:684:20:720:-52.1898,0,-50.1502	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:213:100,113:100:3575:113:4068:-290.646,0,-257.838	0/1:15:8,7:8:288:7:252:-17.9018,0,-21.752	0/0:207:207,0:207:7406:0:0:0,-62.3132,-666.538	0/1:262:116,146:116:4137:146:5248:-379.788,0,-293.643	0/1:98:55,43:55:1976:43:1548:-103.839,0,-148.614	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/1:223:110,113:110:3927:113:4064:-286.605,0,-286.491	0/1:125:32,93:32:1152:93:3318:-251.279,0,-66.3614	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.757	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.514	0/1:43:20,23:20:712:23:828:-59.0241,0,-51.4624	0/0:123:118,5:118:4216:5:180:0,-22.0125,-364.601	0/1:93:49,44:49:1760:44:1584:-105.732,0,-130.688	0/1:309:169,140:169:6056:140:5020:-339.843,0,-452.124	0/0:206:206,0:206:7354:0:0:0,-62.0122,-661.905	0/1:125:66,59:66:2360:59:2116:-142.267,0,-175.03	0/1:164:83,81:83:2980:81:2894:-195.501,0,-219.063	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:143:141,2:141:5040:2:72:0,-36.4838,-447.178	0/0:90:89,1:89:3178:1:36:0,-23.7051,-282.856	0/0:289:289,0:289:10292:0:0:0,-86.9977,-926.174	0/0:130:130,0:130:4655:0:0:0,-39.1339,-419.106	0/0:123:123,0:123:4365:0:0:0,-37.0267,-393.023	0/0:115:115,0:115:4120:0:0:0,-34.6184,-370.984	0/0:186:186,0:186:6663:0:0:0,-55.9916,-599.744	0/1:55:22,33:22:792:33:1188:-83.1298,0,-55.049	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.583	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.235	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.438	0/1:235:110,125:110:3895:125:4496:-314.843,0,-279.998	0/1:79:28,51:28:1004:51:1824:-134.704,0,-66.8945	0/0:101:99,2:99:3547:2:72:0,-23.7489,-312.783	0/0:137:137,0:137:4902:0:0:0,-41.2411,-441.33
chr04	1921840	.	G	A	69600.9	PASS	AB=0.515876;ABP=8.0437;AC=143;AF=0.768817;AN=186;AO=3442;CIGAR=1X;DP=4559;DPB=4559;DPRA=0;EPP=6334.62;EPPR=2069.43;GTI=0;LEN=1;MEANALT=1;MQM=38.156;MQMR=38.2927;NS=93;NUMALT=1;ODDS=1.59925;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123081;QR=39750;RO=1117;RPL=137;RPP=6334.62;RPPR=2069.43;RPR=3305;RUN=1;SAF=0;SAP=7477.22;SAR=3442;SRF=0;SRP=2428.54;SRR=1117;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:19,13:19:656:13:468:-28.9913,0,-42.4766	1/1:31:0,31:0:0:31:1101:-89.6207,-9.33193,0	1/1:103:0,103:0:0:103:3662:-297.345,-31.0061,0	1/1:105:1,104:1:36:104:3740:-315.827,-28.0167,0	1/1:17:0,17:0:0:17:603:-50.673,-5.11751,0	1/1:17:0,17:0:0:17:612:-49.4336,-5.11751,0	0/1:69:39,30:39:1381:30:1064:-71.2651,0,-98.1743	1/1:45:0,45:0:0:45:1604:-129.727,-13.5464,0	0/1:75:38,37:38:1360:37:1324:-83.4546,0,-87.6456	1/1:15:0,15:0:0:15:540:-46.4908,-4.51545,0	1/1:38:0,38:0:0:38:1304:-111.71,-11.4391,0	1/1:90:0,90:0:0:90:3215:-262.387,-27.0927,0	0/1:87:46,41:46:1639:41:1468:-92.2015,0,-107.452	1/1:58:0,58:0:0:58:2080:-171.246,-17.4597,0	0/1:77:31,46:31:1112:46:1639:-117.64,0,-72.1116	0/1:62:31,31:31:1116:31:1103:-72.489,0,-74.0535	1/1:32:0,32:0:0:32:1144:-93.9782,-9.63296,0	1/1:27:0,27:0:0:27:968:-78.7737,-8.12781,0	0/1:41:19,22:19:680:22:788:-51.277,0,-43.609	0/1:41:19,22:19:675:22:788:-54.8127,0,-44.9359	0/1:75:21,54:21:731:54:1931:-138.55,0,-39.6253	0/1:57:35,22:35:1239:22:792:-51.6687,0,-91.0587	0/1:61:28,33:28:978:33:1184:-82.6874,0,-65.4997	1/1:34:1,33:1:36:33:1166:-93.6424,-6.98886,0	0/1:44:21,23:21:756:23:824:-56.1145,0,-50.1298	0/1:90:38,52:38:1360:52:1868:-135.17,0,-90.8946	0/1:115:57,58:57:2026:58:2080:-138.408,0,-134.222	1/1:41:0,41:0:0:41:1468:-123.201,-12.3422,0	0/1:114:45,69:45:1604:69:2484:-177.61,0,-102.805	0/1:62:28,34:28:1008:34:1207:-83.5159,0,-65.1088	1/1:44:0,44:0:0:44:1565:-133.874,-13.2453,0	.:.:.:.:.:.:.:.	0/1:4:1,3:1:36:3:108:-8.16509,0,-2.14203	1/1:2:0,2:0:0:2:72:-6.1677,-0.60206,0	1/1:4:0,4:0:0:4:144:-12.0108,-1.20412,0	0/1:4:1,3:1:36:3:108:-7.88512,0,-2.04204	1/1:157:0,157:0:0:157:5629:-487.61,-47.2617,0	1/1:57:0,57:0:0:57:2052:-169.777,-17.1587,0	1/1:35:0,35:0:0:35:1260:-101.913,-10.5361,0	1/1:1:0,1:0:0:1:36:-3.34615,-0.30103,0	0/1:52:31,21:31:1075:21:756:-47.5206,0,-74.8452	1/1:26:0,26:0:0:26:932:-78.6696,-7.82678,0	0/1:46:19,27:19:661:27:972:-68.2543,0,-42.0632	0/1:63:36,27:36:1296:27:968:-64.2976,0,-90.7897	1/1:54:0,54:0:0:54:1927:-161.701,-16.2556,0	0/1:22:9,13:9:324:13:446:-32.7462,0,-21.815	1/1:34:0,34:0:0:34:1220:-98.5828,-10.235,0	0/1:72:32,40:32:1144:40:1436:-98.3052,0,-76.4213	0/1:37:14,23:14:500:23:820:-59.6135,0,-32.0672	0/1:53:28,25:28:1000:25:896:-59.7619,0,-68.9229	1/1:62:0,62:0:0:62:2217:-192.142,-18.6639,0	1/1:3:0,3:0:0:3:104:-9.26608,-0.90309,0	0/1:53:17,36:17:612:36:1292:-89.3447,0,-33.4135	0/1:19:14,5:14:504:5:180:-10.2916,0,-38.6986	1/1:4:0,4:0:0:4:144:-11.116,-1.20412,0	1/1:32:0,32:0:0:32:1144:-95.3615,-9.63296,0	0/1:22:5,17:5:180:17:606:-43.8002,0,-8.41291	1/1:2:0,2:0:0:2:72:-6.72502,-0.60206,0	0/1:10:5,5:5:180:5:180:-13.0009,0,-13.1091	1/1:23:0,23:0:0:23:828:-68.9423,-6.92369,0	0/1:87:48,39:48:1693:39:1404:-93.5493,0,-117.591	0/1:5:2,3:2:72:3:108:-8.08093,0,-4.99969	1/1:78:1,77:1:32:77:2768:-237.318,-20.4567,0	0/1:48:27,21:27:968:21:743:-49.6466,0,-68.4095	0/1:23:9,14:9:324:14:490:-34.444,0,-20.2414	1/1:25:0,25:0:0:25:900:-77.3034,-7.52575,0	0/1:79:38,41:38:1360:41:1472:-101.668,0,-92.6298	0/1:92:58,34:58:2088:34:1212:-75.2963,0,-148.143	1/1:32:0,32:0:0:32:1148:-94.7423,-9.63296,0	1/1:36:0,36:0:0:36:1292:-105.371,-10.8371,0	1/1:38:0,38:0:0:38:1368:-118.187,-11.4391,0	0/1:11:6,5:6:216:5:180:-12.4372,0,-15.8387	1/1:43:0,43:0:0:43:1532:-125.499,-12.9443,0	0/1:58:25,33:25:881:33:1176:-77.8122,0,-54.1541	0/1:75:36,39:36:1278:39:1400:-94.2211,0,-83.2502	1/1:55:0,55:0:0:55:1976:-169.6,-16.5567,0	0/1:35:11,24:11:373:24:855:-59.6423,0,-19.9659	0/1:21:11,10:11:392:10:360:-22.3382,0,-25.7149	1/1:10:0,10:0:0:10:356:-29.658,-3.0103,0	1/1:24:0,24:0:0:24:864:-72.7489,-7.22472,0	1/1:53:0,53:0:0:53:1895:-154.067,-15.9546,0	1/1:93:0,93:0:0:93:3306:-278.087,-27.9958,0	1/1:51:0,51:0:0:51:1820:-155.806,-15.3525,0	1/1:68:0,68:0:0:68:2416:-206.544,-20.47,0	1/1:58:0,58:0:0:58:2088:-177.807,-17.4597,0	1/1:117:1,116:1:36:116:4124:-348.632,-31.6222,0	0/1:31:17,14:17:593:14:500:-31.4702,0,-38.9827	1/1:57:0,57:0:0:57:2040:-166.33,-17.1587,0	1/1:70:0,70:0:0:70:2494:-202.337,-21.0721,0	1/1:42:0,42:0:0:42:1507:-126.08,-12.6433,0	0/1:95:43,52:43:1535:52:1868:-128.207,0,-100.326	0/1:80:55,25:55:1968:25:887:-51.7266,0,-143.43	1/1:52:0,52:0:0:52:1863:-158.842,-15.6536,0	1/1:65:0,65:0:0:65:2336:-198.516,-19.567,0
chr04	1988218	.	T	A	43412.8	PASS	AB=0.498117;ABP=3.16568;AC=44;AF=0.234043;AN=188;AO=2522;CIGAR=1X;DP=9071;DPB=9071;DPRA=1.51693;EPP=5196.58;EPPR=13209.1;GTI=3;LEN=1;MEANALT=1;MQM=59.3668;MQMR=59.9308;NS=94;NUMALT=1;ODDS=0.459534;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89792;QR=234638;RO=6549;RPL=2490;RPP=5205.04;RPPR=13209.1;RPR=32;RUN=1;SAF=1;SAP=5470.78;SAR=2521;SRF=0;SRP=14224;SRR=6549;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:90:66,24:66:2353:24:847:-49.3751,0,-184.935	0/0:102:102,0:102:3638:0:0:0,-30.7051,-327.491	0/0:145:145,0:145:5201:0:0:0,-43.6493,-468.036	0/0:217:217,0:217:7800:0:0:0,-65.3235,-701.791	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.305	0/1:133:67,66:67:2397:66:2338:-170.526,0,-175.948	0/0:253:253,0:253:9032:0:0:0,-76.1606,-812.854	0/1:153:75,78:75:2700:78:2795:-205.643,0,-197.178	0/0:105:105,0:105:3780:0:0:0,-31.6081,-340.397	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:106:106,0:106:3782:0:0:0,-31.9092,-340.576	0/1:77:41,36:41:1472:36:1284:-92.538,0,-109.597	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:71:32,39:32:1152:39:1400:-104.891,0,-82.617	0/1:46:29,17:29:1044:17:604:-40.8361,0,-80.4274	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5051	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:34:22,12:22:792:12:432:-28.9862,0,-61.3707	0/1:135:69,66:69:2450:66:2351:-171.132,0,-180.113	0/1:235:121,114:121:4333:114:4072:-295.908,0,-319.401	0/1:60:24,36:24:864:36:1288:-98.1516,0,-60.0208	0/1:114:48,66:48:1728:66:2353:-177.612,0,-121.477	0/0:89:84,5:84:3016:5:180:0,-10.2396,-255.118	0/1:107:49,58:49:1756:58:2064:-153.78,0,-126.114	0/1:287:135,152:135:4806:152:5420:-401.14,0,-346.299	0/1:266:139,127:139:4989:127:4518:-326.643,0,-369.08	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:244:122,122:122:4362:122:4347:-317.931,0,-319.3	0/1:119:64,55:64:2285:55:1952:-140.106,0,-170.083	0/0:103:103,0:103:3685:0:0:0,-31.0061,-331.851	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:15:8,7:8:288:7:252:-18.5088,0,-21.752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:161:161,0:161:5758:0:0:0,-48.4658,-518.115	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:130:91,39:91:3268:39:1385:-85.7599,0,-255.206	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:223:110,113:110:3944:113:4003:-293.212,0,-288.022	0/1:46:23,23:23:828:23:816:-59.9097,0,-60.9967	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:96:56,40:56:2016:40:1428:-99.8965,0,-152.324	0/0:152:152,0:152:5468:0:0:0,-45.7566,-490.606	0/1:328:149,179:149:5348:179:6398:-476.236,0,-382.622	0/1:116:58,58:58:2080:58:2088:-153.249,0,-152.551	0/1:142:69,73:69:2480:73:2593:-190.859,0,-180.707	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:107:61,46:61:2196:46:1624:-114.192,0,-165.695	0/1:77:38,39:38:1353:39:1392:-102.4,0,-98.8891	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:130:130,0:130:4672:0:0:0,-39.1339,-420.639	0/1:54:27,27:27:957:27:945:-69.1048,0,-70.1882	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5474	0/0:130:130,0:130:4657:0:0:0,-39.1339,-419.29	0/1:58:24,34:24:864:34:1220:-92.6392,0,-60.6228	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:104:104,0:104:3710:0:0:0,-31.3071,-334.099	0/1:126:71,55:71:2548:55:1952:-137.978,0,-191.641	0/1:59:40,19:40:1421:19:680:-43.718,0,-110.425	0/0:115:114,1:114:4096:1:32:0,-31.4212,-364.69	0/1:161:78,83:78:2808:83:2963:-218.411,0,-204.493	0/1:355:129,226:129:4598:226:7994:-611.895,0,-307.031	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:99:99,0:99:3534:0:0:0,-29.802,-318.266	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:27:11,16:11:396:16:557:-42.3231,0,-27.8549	0/0:99:99,0:99:3529:0:0:0,-29.802,-317.774	0/1:109:55,54:55:1976:54:1936:-141.657,0,-145.298	0/1:171:109,62:109:3909:62:2200:-146.693,0,-300.525	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.512	0/1:124:56,68:56:1986:68:2440:-182.452,0,-141.493	0/1:173:76,97:76:2694:97:3459:-258.904,0,-190.624	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:102:102,0:102:3672:0:0:0,-30.7051,-330.678	0/0:106:106,0:106:3782:0:0:0,-31.9092,-340.568	0/0:218:215,3:215:7702:3:108:0,-55.5494,-683.134	0/0:63:63,0:63:2253:0:0:0,-18.9649,-203.031	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:54:54,0:54:1944:0:0:0,-16.2556,-174.918	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.701	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/1:64:38,26:38:1349:26:917:-63.5785,0,-102.442	0/1:60:26,34:26:936:34:1197:-89.8575,0,-66.4977	0/0:113:113,0:113:4030:0:0:0,-34.0164,-362.886	0/0:128:128,0:128:4581:0:0:0,-38.5318,-412.453
chr04	2008624	.	G	A	78844.1	PASS	AB=0.51656;ABP=18.689;AC=46;AF=0.244681;AN=188;AO=3410;CIGAR=1X;DP=14013;DPB=14013;DPRA=0.988627;EPP=7399.05;EPPR=23011.9;GTI=0;LEN=1;MEANALT=1.07843;MQM=59.9921;MQMR=59.9908;NS=94;NUMALT=1;ODDS=9.79044;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122063;QR=377902;RO=10596;RPL=1606;RPP=27.9752;RPPR=3.06276;RPR=1804;RUN=1;SAF=1607;SAP=27.4734;SAR=1803;SRF=5290;SRP=3.06276;SRR=5306;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:88:43,45:43:1540:45:1599:-117.709,0,-112.402	0/0:185:185,0:185:6614:0:0:0,-55.6905,-595.337	0/0:274:274,0:274:9773:0:0:0,-82.4822,-879.518	0/0:271:271,0:271:9712:0:0:0,-81.5791,-873.991	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:135:63,72:63:2260:72:2588:-192.443,0,-163.024	0/0:262:262,0:262:9365:0:0:0,-78.8699,-842.814	0/1:133:82,51:82:2928:51:1824:-124.404,0,-223.718	0/0:186:185,1:185:6612:1:36:0,-52.3933,-591.56	0/0:168:168,0:168:5951:0:0:0,-50.573,-535.702	0/0:190:190,0:190:6769:0:0:0,-57.1957,-609.285	0/1:176:79,97:79:2801:97:3480:-260.43,0,-199.348	0/0:180:180,0:180:6431:0:0:0,-54.1854,-578.878	0/1:165:76,89:76:2712:89:3191:-237.743,0,-194.654	0/1:120:54,66:54:1940:66:2368:-177.254,0,-138.753	0/0:143:143,0:143:5057:0:0:0,-43.0473,-455.278	0/0:110:110,0:110:3935:0:0:0,-33.1133,-354.342	0/1:84:47,37:47:1660:37:1328:-94.5357,0,-124.398	0/1:342:147,195:147:5246:195:6985:-525.759,0,-369.325	0/1:224:93,131:93:3336:131:4659:-352.042,0,-233.026	0/1:96:34,62:34:1216:62:2228:-171.885,0,-80.8477	0/1:63:29,34:29:1040:34:1216:-90.7817,0,-74.9495	0/0:132:128,4:128:4589:4:144:0,-26.4223,-399.858	0/1:116:55,61:55:1943:61:2196:-162.986,0,-140.223	0/1:385:195,189:195:6996:189:6788:-495.143,0,-513.855	0/1:303:136,167:136:4849:167:5974:-446.554,0,-345.352	0/0:73:73,0:73:2603:0:0:0,-21.9752,-234.518	0/1:310:174,136:174:6181:136:4888:-346.751,0,-463.069	0/1:88:36,52:36:1273:52:1864:-141.549,0,-88.3803	0/0:140:140,0:140:4985:0:0:0,-42.1442,-448.785	0/1:17:9,8:9:324:8:288:-21.1495,0,-24.3883	0/1:26:15,11:15:536:11:392:-27.7933,0,-40.748	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:21:21,0:21:738:0:0:0,-6.32163,-66.7414	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	0/0:360:360,0:360:12841:0:0:0,-108.371,-1155.51	0/0:124:124,0:124:4432:0:0:0,-37.3277,-399.049	0/0:143:143,0:143:5088:0:0:0,-43.0473,-458.043	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:128:69,59:69:2453:59:2114:-151.997,0,-182.492	0/0:87:87,0:87:3085:0:0:0,-26.1896,-277.878	0/1:191:95,96:95:3416:96:3429:-251.327,0,-250.156	0/1:131:55,76:55:1957:76:2732:-206.687,0,-136.969	0/0:119:119,0:119:4232:0:0:0,-35.8226,-381.06	0/1:122:69,53:69:2453:53:1896:-134.192,0,-184.298	0/0:207:205,0:205:7331:0:0:0,-61.7111,-659.477	0/1:239:124,115:124:4428:115:4113:-298.406,0,-326.744	0/1:151:76,75:76:2711:75:2688:-196.709,0,-198.778	0/1:203:104,99:104:3707:99:3545:-258.148,0,-272.721	0/0:177:177,0:177:6296:0:0:0,-53.2823,-566.733	0/1:20:7,13:7:237:13:459:-35.6235,0,-15.6385	0/1:160:90,70:90:3177:70:2512:-178.167,0,-237.988	0/1:74:28,46:28:1004:46:1648:-126.332,0,-68.3996	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/0:184:184,0:184:6590:0:0:0,-55.3895,-593.179	0/1:49:23,26:23:828:26:923:-68.6363,0,-60.0936	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/0:114:114,0:114:4079:0:0:0,-34.3174,-367.296	0/1:210:93,117:93:3319:117:4192:-314.244,0,-235.712	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:278:278,0:278:9892:0:0:0,-83.6863,-890.225	0/1:248:130,118:130:4641:118:4189:-302.533,0,-343.197	0/1:116:67,49:67:2376:49:1752:-123.044,0,-179.177	0/0:134:133,0:133:4739:0:0:0,-40.037,-426.308	0/1:206:108,98:108:3843:98:3506:-253.738,0,-284.056	0/1:165:47,118:47:1676:118:4212:-329.589,0,-101.457	0/0:125:125,0:125:4416:0:0:0,-37.6287,-397.616	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/0:157:157,0:157:5604:0:0:0,-47.2617,-504.481	0/1:54:17,37:17:599:37:1315:-102.395,0,-37.9825	0/0:123:123,0:123:4400:0:0:0,-37.0267,-396.173	0/1:179:107,72:107:3763:72:2588:-179.284,0,-284.986	0/1:192:92,99:92:3256:99:3525:-259.751,0,-235.553	0/0:266:266,0:266:9523:0:0:0,-80.074,-857.026	0/1:152:68,84:68:2421:84:2998:-224.293,0,-172.388	0/1:233:116,116:116:4129:116:4149:-303.393,0,-301.596	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:203:200,3:200:7135:3:108:0,-51.0339,-632.133	0/0:161:161,0:161:5752:0:0:0,-48.4658,-517.797	0/0:305:303,1:303:10814:1:36:0,-88.2747,-969.566	0/0:153:153,0:153:5443:0:0:0,-46.0576,-490	0/0:148:148,0:148:5304:0:0:0,-44.5524,-477.494	0/0:155:154,1:154:5519:1:36:0,-43.0614,-493.236	0/0:298:298,0:298:10617:0:0:0,-89.7069,-955.445	0/1:69:34,35:34:1212:35:1259:-92.8445,0,-88.6153	0/0:140:140,0:140:5001:0:0:0,-42.1442,-450.237	0/0:128:128,0:128:4575:0:0:0,-38.5318,-411.915	0/0:123:123,0:123:4380:0:0:0,-37.0267,-394.376	0/1:214:110,104:110:3909:104:3732:-271.66,0,-287.584	0/1:143:51,92:51:1820:92:3291:-253.362,0,-121.034	0/0:120:120,0:120:4260:0:0:0,-36.1236,-383.079	0/0:264:264,0:264:9418:0:0:0,-79.4719,-847.585
chr04	2012722	.	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chr04	2012907	.	G	A	10145.4	PASS	AB=0.37052;ABP=291.483;AC=42;AF=0.225806;AN=186;AO=735;CIGAR=1X;DP=4371;DPB=4371;DPRA=1.01296;EPP=1599.04;EPPR=7891.97;GTI=2;LEN=1;MEANALT=1.02326;MQM=59.9973;MQMR=60;NS=93;NUMALT=1;ODDS=0.270588;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26050;QR=128034;RO=3633;RPL=0;RPP=1599.04;RPPR=7891.97;RPR=735;RUN=1;SAF=0;SAP=1599.04;SAR=735;SRF=0;SRP=7891.97;SRR=3633;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:13,7:13:464:7:243:-16.1869,0,-36.0769	0/0:54:53,1:53:1888:1:36:0,-12.6573,-166.6	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/0:95:95,0:95:3336:0:0:0,-28.5978,-300.457	0/0:49:49,0:49:1715:0:0:0,-14.7505,-154.632	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	0/1:33:19,13:19:680:13:452:-31.0562,0,-51.5744	0/0:119:119,0:119:4232:0:0:0,-35.8226,-381.06	0/1:30:19,11:19:637:11:392:-26.5892,0,-48.611	0/0:65:65,0:65:2285:0:0:0,-19.5669,-205.911	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/1:14:8,6:8:276:6:216:-15.5761,0,-20.9608	0/0:21:21,0:21:733:0:0:0,-6.32163,-66.2897	0/1:19:7,12:7:248:12:428:-33.1392,0,-16.9446	0/1:20:9,11:9:311:11:387:-29.1453,0,-22.3031	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:22:22,0:22:766:0:0:0,-6.62266,-69.2585	0/1:12:8,4:8:275:4:140:-9.33222,0,-21.4711	0/1:84:68,16:68:2391:16:568:-26.1653,0,-190.159	0/1:56:30,26:30:1036:26:928:-66.9806,0,-76.6885	0/1:56:31,25:31:1078:25:900:-64.4633,0,-80.4692	0/1:18:8,10:8:284:10:348:-26.236,0,-20.4848	0/0:53:53,0:53:1876:0:0:0,-15.9546,-169.119	0/1:32:15,17:15:516:17:597:-44.4232,0,-37.1305	0/1:197:132,65:132:4670:65:2315:-149.307,0,-361.161	0/1:99:75,24:75:2661:24:841:-46.2044,0,-209.933	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:127:87,40:87:3061:40:1408:-88.7837,0,-237.487	0/1:47:22,25:22:772:25:900:-67.1726,0,-55.6529	0/0:59:59,0:59:2057:0:0:0,-17.7608,-185.398	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:98:98,0:98:3443:0:0:0,-29.5009,-310.085	0/0:155:155,0:155:5440:0:0:0,-46.6596,-489.74	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	.:.:.:.:.:.:.:.	0/1:53:30,23:30:1063:23:824:-58.5287,0,-80.0262	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:80:54,26:54:1900:26:919:-58.9438,0,-147.193	0/1:19:11,8:11:396:8:280:-19.8197,0,-30.2632	0/0:19:19,0:19:662:0:0:0,-5.71957,-59.9024	0/1:31:22,9:22:775:9:306:-18.5367,0,-60.7393	0/0:118:118,0:118:4190:0:0:0,-35.5215,-377.284	0/1:90:61,29:61:2117:29:1044:-67.1821,0,-163.703	0/1:85:52,33:52:1831:33:1167:-79.7489,0,-139.48	0/1:83:58,25:58:2043:25:883:-54.802,0,-159.156	0/0:75:75,0:75:2609:0:0:0,-22.5772,-235.058	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978	0/1:80:44,36:44:1543:36:1287:-92.0504,0,-115.076	0/1:12:7,5:7:252:5:176:-12.5717,0,-19.4166	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:75:75,0:75:2629:0:0:0,-22.5772,-236.858	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:40:40,0:40:1414:0:0:0,-12.0412,-127.556	0/1:57:26,31:26:924:31:1112:-83.2326,0,-66.3189	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/0:148:148,0:148:5218:0:0:0,-44.5524,-469.764	0/1:115:78,37:78:2766:37:1324:-84.8436,0,-214.563	0/1:25:18,7:18:640:7:248:-15.1384,0,-50.4036	0/0:62:62,0:62:2169:0:0:0,-18.6639,-195.473	0/1:79:56,23:56:1995:23:824:-50.7019,0,-156.042	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/0:42:41,0:41:1464:0:0:0,-12.3422,-131.696	0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4154	0/0:59:59,0:59:2082:0:0:0,-17.7608,-187.649	0/1:21:17,4:17:608:4:131:-5.79184,0,-48.7304	0/1:42:25,17:25:896:17:595:-41.2334,0,-68.3171	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:79:50,29:50:1777:29:1021:-68.4189,0,-136.43	0/1:49:36,13:36:1284:13:451:-26.1694,0,-101.113	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:64:64,0:64:2252:0:0:0,-19.2659,-202.942	0/0:101:101,0:101:3537:0:0:0,-30.404,-318.544	0/0:131:130,0:130:4577:0:0:0,-39.1339,-411.739	0/0:45:45,0:45:1566:0:0:0,-13.5463,-141.227	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/0:45:45,0:45:1581:0:0:0,-13.5463,-142.578	0/1:20:7,13:7:248:13:468:-36.439,0,-16.6436	0/0:32:32,0:32:1131:0:0:0,-9.63296,-102.098	0/0:34:34,0:34:1195:0:0:0,-10.235,-107.855	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/1:35:19,16:19:662:16:544:-38.7437,0,-49.3664	0/1:22:6,16:6:193:16:567:-44.7381,0,-11.063	0/0:60:60,0:60:2087:0:0:0,-18.0618,-188.098	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935
chr04	2033871	.	T	G	105866	PASS	AB=0.465156;ABP=39.7821;AC=142;AF=0.755319;AN=188;AO=5020;CIGAR=1X;DP=6892;DPB=6892;DPRA=0;EPP=10895.1;EPPR=4003.09;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.3681;MQMR=59.9321;NS=94;NUMALT=1;ODDS=0.479449;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178779;QR=66400;RO=1870;RPL=30;RPP=10644.8;RPPR=4003.09;RPR=4990;RUN=1;SAF=29;SAP=10653.4;SAR=4991;SRF=0;SRP=4063.66;SRR=1870;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:15,14:15:517:14:486:-35.3217,0,-38.1247	1/1:107:0,107:0:0:107:3783:-340.615,-32.2102,0	1/1:70:0,70:0:0:70:2496:-224.887,-21.0721,0	1/1:158:0,158:0:0:158:5663:-509.766,-47.5627,0	1/1:24:0,24:0:0:24:864:-78.0687,-7.22472,0	1/1:28:0,28:0:0:28:993:-89.6662,-8.42884,0	0/1:115:51,63:51:1794:63:2216:-164.989,0,-127.057	1/1:92:0,92:0:0:92:3277:-295.074,-27.6948,0	0/1:84:46,38:46:1640:38:1368:-97.7377,0,-122.598	1/1:81:0,81:0:0:81:2899:-260.703,-24.3834,0	1/1:72:0,72:0:0:72:2542:-229.009,-21.6742,0	1/1:71:0,71:0:0:71:2498:-225.053,-21.3731,0	0/1:73:30,43:30:1068:43:1548:-117.622,0,-74.3425	1/1:125:0,125:0:0:125:4433:-399.094,-37.6288,0	0/1:57:31,26:31:1104:26:928:-66.6772,0,-82.5119	0/1:62:31,31:31:1108:31:1099:-80.4383,0,-81.2373	1/1:75:0,75:0:0:75:2673:-240.796,-22.5773,0	1/1:55:0,55:0:0:55:1971:-177.569,-16.5567,0	0/1:53:20,33:20:716:33:1166:-89.2747,0,-48.8131	0/1:84:51,33:51:1793:33:1180:-81.2129,0,-136.364	0/1:122:75,47:75:2684:47:1668:-113.669,0,-205.079	0/1:62:43,19:43:1528:19:677:-42.5929,0,-119.149	0/1:64:27,37:27:964:37:1328:-100.549,0,-67.8063	1/1:96:6,90:6:216:90:3206:-268.942,-9.10837,0	0/1:62:51,11:51:1820:11:383:-15.9674,0,-145.417	0/1:165:86,79:86:3080:79:2805:-202.956,0,-227.758	0/1:152:76,76:76:2701:76:2714:-198.691,0,-197.577	1/1:27:0,27:0:0:27:960:-86.7098,-8.12781,0	0/1:203:145,58:145:5170:58:2074:-125.816,0,-404.33	0/1:155:82,73:82:2894:73:2607:-188.12,0,-214.035	1/1:115:0,115:0:0:115:4105:-369.603,-34.6185,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:6:2,4:2:72:4:134:-10.581,0,-5.03054	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:2,4:2:64:4:140:-11.13,0,-4.27251	1/1:179:0,179:0:0:179:6396:-575.499,-53.8844,0	1/1:97:0,97:0:0:97:3415:-307.515,-29.1999,0	1/1:80:0,80:0:0:80:2848:-256.5,-24.0824,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:81:36,45:36:1258:45:1601:-119.99,0,-89.1348	1/1:66:0,66:0:0:66:2324:-209.395,-19.868,0	0/1:129:82,47:82:2889:47:1684:-113.01,0,-221.415	0/1:84:43,41:43:1536:41:1441:-104.698,0,-113.247	1/1:63:0,63:0:0:63:2241:-201.932,-18.9649,0	0/1:68:25,43:25:880:43:1540:-118.361,0,-58.9613	1/1:57:0,57:0:0:57:2009:-181.069,-17.1587,0	0/1:128:70,58:70:2455:58:2061:-147.221,0,-182.669	0/1:81:43,38:43:1540:38:1356:-97.5648,0,-114.51	0/1:80:49,31:49:1748:31:1083:-73.6788,0,-133.517	1/1:106:0,106:0:0:106:3784:-340.691,-31.9092,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:102:48,54:48:1690:54:1932:-143.394,0,-121.62	0/1:52:16,36:16:576:36:1281:-99.9191,0,-36.5214	1/1:31:0,31:0:0:31:1087:-98.0653,-9.33193,0	1/1:62:0,62:0:0:62:2215:-199.096,-18.6639,0	0/1:44:27,17:27:964:17:612:-42.1658,0,-73.8315	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:11:1,10:1:36:10:360:-29.2413,0,-0.286945	1/1:71:0,71:0:0:71:2529:-227.703,-21.3731,0	0/1:120:53,67:53:1904:67:2396:-179.765,0,-135.514	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:115:0,115:0:0:115:4115:-370.401,-34.6185,0	0/1:119:63,56:63:2240:56:1988:-143.226,0,-166.042	0/1:44:30,14:30:1072:14:495:-31.5844,0,-83.5471	1/1:38:0,38:0:0:38:1333:-120.207,-11.4391,0	0/1:139:79,60:79:2809:60:2116:-148.831,0,-211.206	0/1:40:28,12:28:1000:12:432:-27.1753,0,-78.2742	1/1:29:0,29:0:0:29:1005:-90.747,-8.72987,0	1/1:34:0,34:0:0:34:1203:-108.557,-10.235,0	1/1:74:0,74:0:0:74:2636:-237.48,-22.2762,0	0/1:13:2,11:2:72:11:387:-31.2478,0,-2.92333	1/1:68:0,68:0:0:68:2426:-218.552,-20.47,0	0/1:72:42,30:42:1470:30:1076:-75.4686,0,-110.916	0/1:145:63,82:63:2210:82:2952:-220.954,0,-155.511	1/1:84:0,84:0:0:84:3003:-270.491,-25.2865,0	0/1:71:33,37:33:1169:37:1328:-98.3456,0,-84.0835	0/1:78:44,34:44:1572:34:1202:-84.7999,0,-118.263	1/1:15:0,15:0:0:15:531:-47.9309,-4.51545,0	1/1:55:0,55:0:0:55:1955:-175.701,-16.5567,0	1/1:51:0,51:0:0:51:1828:-164.76,-15.3525,0	1/1:124:0,124:0:0:124:4437:-399.397,-37.3277,0	1/1:75:0,75:0:0:75:2684:-241.79,-22.5773,0	1/1:67:0,67:0:0:67:2390:-215.172,-20.169,0	1/1:85:0,85:0:0:85:3036:-273.446,-25.5876,0	1/1:142:0,142:0:0:142:5073:-456.672,-42.7463,0	0/1:37:21,16:21:741:16:576:-41.0205,0,-55.8735	1/1:60:0,60:0:0:60:2143:-192.997,-18.0618,0	1/1:55:0,55:0:0:55:1980:-178.45,-16.5567,0	1/1:66:0,66:0:0:66:2368:-213.188,-19.868,0	0/1:97:38,59:38:1364:59:2063:-155.907,0,-93.8608	0/1:80:53,27:53:1880:27:959:-62.543,0,-145.396	1/1:47:0,47:0:0:47:1676:-151.102,-14.1484,0	1/1:103:1,102:1:36:102:3656:-325.542,-27.4078,0
chr04	2033899	.	G	A	32431.6	PASS	AB=0.538484;ABP=47.9688;AC=46;AF=0.244681;AN=188;AO=1888;CIGAR=1X;DP=6904;DPB=6904;DPRA=1.08454;EPP=4102.75;EPPR=10871.2;GTI=3;LEN=1;MEANALT=1.14894;MQM=59.9147;MQMR=59.3552;NS=94;NUMALT=1;ODDS=0.103702;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67517;QR=178862;RO=5005;RPL=1888;RPP=4102.75;RPPR=10871.2;RPR=0;RUN=1;SAF=0;SAP=4102.75;SAR=1888;SRF=0;SRP=10871.2;SRR=5005;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:464:14:496:-36.8464,0,-33.9533	0/0:111:111,0:111:3976:0:0:0,-33.4143,-357.963	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.789	0/0:160:160,0:160:5731:0:0:0,-48.1648,-514.943	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4695	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6595	0/1:113:63,50:63:2240:50:1784:-126.822,0,-167.813	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.445	0/1:84:37,47:37:1319:47:1680:-126.196,0,-93.3361	0/0:80:80,0:80:2876:0:0:0,-24.0824,-258.636	0/0:73:72,0:72:2568:0:0:0,-21.6742,-230.973	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.467	0/1:75:44,31:44:1564:31:1104:-77.0394,0,-118.458	0/0:124:124,0:124:4422:0:0:0,-37.3277,-398.089	0/1:58:26,32:26:928:32:1148:-86.1701,0,-66.3762	0/1:64:31,32:31:1116:32:1152:-84.5356,0,-80.6392	0/0:75:75,0:75:2687:0:0:0,-22.5772,-242.046	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.819	0/1:54:35,19:35:1252:19:675:-44.8213,0,-96.705	0/1:86:33,53:33:1188:53:1893:-144.758,0,-81.3314	0/1:121:47,74:47:1688:74:2641:-201.511,0,-115.764	0/1:60:17,43:17:608:43:1528:-119.751,0,-36.986	0/1:66:37,28:37:1328:28:1008:-71.1436,0,-99.9298	0/0:97:91,6:91:3260:6:216:0,-9.4094,-273.802	0/1:64:11,53:11:396:53:1904:-152.372,0,-16.4227	0/1:163:78,85:78:2779:85:3028:-223.684,0,-201.222	0/1:153:76,76:76:2715:76:2728:-199.647,0,-198.422	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.4971	0/1:212:59,153:59:2115:153:5468:-428.431,0,-126.795	0/1:152:69,83:69:2480:83:2968:-221.597,0,-177.478	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.833	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5003	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:4,2:4:135:2:68:-4.65153,0,-10.668	0/0:180:180,0:180:6404:0:0:0,-54.1854,-575.753	0/0:97:97,0:97:3471:0:0:0,-29.1999,-312.541	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.226	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:79:45,34:45:1616:34:1212:-85.605,0,-121.944	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.135	0/1:132:46,86:46:1631:86:3040:-234.091,0,-107.324	0/1:84:41,42:41:1468:42:1508:-110.669,0,-107.068	0/0:62:62,0:62:2210:0:0:0,-18.6639,-199.159	0/1:67:42,25:42:1500:25:900:-61.152,0,-115.063	0/0:55:55,0:55:1951:0:0:0,-16.5566,-175.862	0/1:128:58,70:58:2067:70:2496:-186.361,0,-147.759	0/1:80:38,42:38:1356:42:1508:-111.932,0,-97.5948	0/1:82:31,51:31:1116:51:1828:-140.112,0,-76.0532	0/0:106:106,0:106:3768:0:0:0,-31.9092,-339.253	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:105:55,50:55:1972:50:1800:-130.544,0,-146.081	0/1:50:36,14:36:1284:14:500:-30.2847,0,-100.792	0/0:32:32,0:32:1131:0:0:0,-9.63296,-102.018	0/0:61:61,0:61:2175:0:0:0,-18.3628,-195.164	0/1:44:16,28:16:576:28:1004:-77.4305,0,-38.9273	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:11:10,1:10:356:1:36:-0.286945,0,-28.8782	0/0:68:68,0:68:2414:0:0:0,-20.47,-217.238	0/1:125:67,56:67:2412:56:2008:-143.584,0,-179.941	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/0:116:116,0:116:4155:0:0:0,-34.9195,-373.998	0/1:123:57,66:57:2048:66:2368:-176.351,0,-146.731	0/1:48:14,34:14:500:34:1212:-94.5075,0,-30.8334	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.932	0/1:137:60,77:60:2144:77:2752:-206.681,0,-151.886	0/1:41:12,29:12:432:29:1044:-81.9326,0,-26.8743	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9005	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.6	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.623	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0021	0/0:67:66,0:66:2351:0:0:0,-19.868,-211.429	0/1:72:30,42:30:1080:42:1500:-113.62,0,-75.829	0/1:142:83,59:83:2984:59:2116:-147.96,0,-224.736	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.256	0/1:60:25,35:25:892:35:1248:-94.5631,0,-62.5099	0/1:76:34,40:34:1216:40:1436:-106.873,0,-86.7583	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0028	0/0:55:55,0:55:1964:0:0:0,-16.5566,-176.79	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.765	0/0:123:123,0:123:4412:0:0:0,-37.0267,-397.067	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.695	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.093	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.035	0/0:143:143,0:143:5123:0:0:0,-43.0473,-460.97	0/1:37:16,21:16:572:21:752:-56.8681,0,-40.6589	0/0:59:59,0:59:2098:0:0:0,-17.7608,-188.942	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.799	0/0:67:67,0:67:2379:0:0:0,-20.169,-214.25	0/1:97:58,39:58:2059:39:1400:-97.0993,0,-154.828	0/1:77:26,50:26:924:50:1792:-138.324,0,-60.2397	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.413	0/0:101:101,0:101:3620:0:0:0,-30.404,-325.901
chr04	2045823	.	T	C	24429.5	PASS	AB=0.615348;ABP=243.967;AC=46;AF=0.247312;AN=186;AO=1381;CIGAR=1X;DP=4008;DPB=4008;DPRA=1.50412;EPP=3001.81;EPPR=5705.3;GTI=8;LEN=1;MEANALT=1.02;MQM=59.5568;MQMR=59.9048;NS=93;NUMALT=1;ODDS=0.176778;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49268;QR=94089;RO=2626;RPL=0;RPP=3001.81;RPPR=5705.3;RPR=1381;RUN=1;SAF=1381;SAP=3001.81;SAR=0;SRF=2626;SRP=5705.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:9,22:9:320:22:792:-62.0832,0,-19.8104	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:107:106,1:106:3792:1:36:0,-28.6119,-337.878	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:67:21,46:21:752:46:1636:-127.341,0,-47.8372	0/0:34:33,1:33:1188:1:36:0,-6.63674,-103.63	0/1:30:11,19:11:396:19:675:-51.8885,0,-26.9518	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:65:65,0:65:2301:0:0:0,-19.5669,-207.16	0/1:42:20,22:20:720:22:788:-58.5878,0,-52.4855	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2702	0/1:32:16,16:16:572:16:567:-41.7275,0,-42.1805	0/1:25:13,12:13:468:12:428:-31.2593,0,-34.9339	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:21:4,17:4:144:17:600:-47.9616,0,-6.99199	0/1:80:19,61:19:684:61:2157:-170.254,0,-37.8079	0/1:116:55,61:55:1972:61:2188:-162.247,0,-142.835	1/1:62:1,61:1:36:61:2168:-191.691,-15.0656,0	0/1:35:8,27:8:288:27:960:-76.1779,0,-15.7314	0/0:33:31,2:31:1112:2:72:0,-3.09727,-93.5465	0/1:26:10,16:10:356:16:572:-43.9866,0,-24.5545	0/1:110:42,67:42:1508:67:2396:-182.886,0,-103.008	0/1:144:64,80:64:2296:80:2848:-213.05,0,-162.616	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:138:29,109:29:1032:109:3896:-309.205,0,-51.6513	0/1:52:14,38:14:504:38:1360:-107.033,0,-29.9141	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:101:101,0:101:3627:0:0:0,-30.404,-326.631	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	.:.:.:.:.:.:.:.	0/1:51:18,33:18:648:33:1163:-89.619,0,-43.2994	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:56:13,43:13:464:43:1540:-122.026,0,-25.2398	0/1:39:20,19:20:720:19:684:-50.1478,0,-53.3886	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:59:29,30:29:1036:30:1068:-78.6713,0,-75.7931	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.261	0/1:83:35,48:35:1252:48:1728:-130.82,0,-87.9996	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:57:28,29:28:1008:29:1040:-76.7557,0,-73.8753	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:61:30,31:30:1076:31:1104:-81.1172,0,-78.79	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2592	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:36:16,20:16:572:20:716:-53.9237,0,-40.9763	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:74:22,52:22:792:52:1851:-144.586,0,-49.3295	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:118:117,1:117:4196:1:36:0,-31.9233,-374.222	0/1:85:24,61:24:860:61:2170:-169.969,0,-52.1343	0/1:23:15,8:15:536:8:284:-18.9773,0,-41.6511	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:67:33,34:33:1184:34:1220:-89.9308,0,-86.697	0/1:34:16,18:16:568:18:640:-47.6915,0,-41.2168	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.885	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.123	0/1:47:32,15:32:1144:15:536:-34.3813,0,-89.1211	0/1:111:34,77:34:1209:77:2760:-215.083,0,-75.6998	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.344	1/1:32:2,30:2:72:30:1072:-89.9476,-2.79624,0	0/1:44:21,23:21:756:23:820:-60.8625,0,-55.1219	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:43:42,1:42:1508:1:36:0,-9.34601,-132.416	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.106	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.894	0/0:36:35,1:35:1251:1:36:0,-7.2388,-109.296	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.0414	0/0:69:69,0:69:2454:0:0:0,-20.7711,-221.112	0/1:28:6,22:6:216:22:788:-62.8104,0,-11.3617	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:63:29,34:29:1040:34:1193:-88.6339,0,-74.9495	0/1:44:13,31:13:468:31:1108:-86.7752,0,-29.2143	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:58:58,0:58:2088:0:0:0,-17.4597,-187.997
chr04	2092527	.	T	A	32731.4	PASS	AB=0.519257;ABP=14.8024;AC=44;AF=0.234043;AN=188;AO=1905;CIGAR=1X;DP=7078;DPB=7078;DPRA=1.19982;EPP=4104.99;EPPR=11078;GTI=2;LEN=1;MEANALT=1.04167;MQM=59.9843;MQMR=59.995;NS=94;NUMALT=1;ODDS=0.714511;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68262;QR=184682;RO=5168;RPL=4;RPP=4104.99;RPPR=11095.3;RPR=1901;RUN=1;SAF=1905;SAP=4139.67;SAR=0;SRF=5166;SRP=11207.8;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:17,23:17:608:23:820:-62.0813,0,-43.0108	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/0:206:206,0:206:7366:0:0:0,-62.0122,-662.988	0/0:37:37,0:37:1310:0:0:0,-11.1381,-118.2	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:43:18,25:18:644:25:892:-67.6554,0,-45.3463	0/0:126:126,0:126:4493:0:0:0,-37.9298,-404.539	0/1:87:45,42:45:1593:42:1508:-109.825,0,-117.469	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:80:40,40:40:1428:40:1436:-105.455,0,-104.735	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/1:96:47,49:47:1688:49:1760:-129.785,0,-123.308	0/1:45:29,16:29:1044:16:576:-38.6286,0,-80.7285	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:18:15,3:15:536:3:108:-4.65663,0,-43.1563	0/1:122:50,72:50:1787:72:2580:-195.724,0,-124.386	0/1:198:84,114:84:2995:114:4083:-308.051,0,-210.178	0/1:57:26,31:26:936:31:1112:-83.2326,0,-67.4008	0/1:71:34,37:34:1190:37:1313:-97.0966,0,-86.0279	0/1:42:35,7:35:1248:7:252:-10.3857,0,-99.9816	0/1:94:58,36:58:2062:36:1281:-87.2945,0,-157.553	0/1:172:81,91:81:2916:91:3268:-242.562,0,-210.897	0/1:219:96,123:96:3440:123:4409:-331.054,0,-243.887	0/0:46:45,1:45:1611:1:36:0,-10.2491,-141.681	0/1:198:69,129:69:2475:129:4613:-355.729,0,-163.399	0/1:117:53,64:53:1896:64:2290:-171.141,0,-135.698	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:4,3:4:144:3:108:-7.60813,0,-10.8466	0/0:186:186,0:186:6668:0:0:0,-55.9916,-600.196	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:77:34,42:34:1201:42:1512:-113.137,0,-85.1557	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:136:60,76:60:2156:76:2728:-204.629,0,-152.997	0/1:53:34,19:34:1224:19:680:-45.5746,0,-94.5125	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/1:137:67,70:67:2381:70:2501:-184.101,0,-173.305	0/0:105:105,0:105:3753:0:0:0,-31.6081,-337.969	0/1:145:71,74:71:2530:74:2654:-195.456,0,-184.301	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.036	0/1:88:46,42:46:1644:42:1500:-108.804,0,-121.758	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:58:36,22:36:1292:22:784:-53.4242,0,-99.124	0/1:77:47,30:47:1668:30:1080:-74.3339,0,-127.228	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:105:105,0:105:3744:0:0:0,-31.6081,-337.162	0/1:41:22,19:22:788:19:684:-49.5481,0,-58.9026	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:12:11,1:11:392:1:36:0,-0.0140849,-32.0218	0/0:61:61,0:61:2166:0:0:0,-18.3628,-195.206	0/1:91:48,43:48:1716:43:1548:-112.219,0,-127.332	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:188:188,0:188:6728:0:0:0,-56.5936,-605.595	0/1:223:114,109:114:4088:109:3901:-284.152,0,-300.975	0/1:57:32,25:32:1152:25:896:-63.8016,0,-86.8314	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/1:163:70,93:70:2512:93:3340:-251.749,0,-177.264	0/1:113:38,75:38:1355:75:2696:-208.867,0,-88.2333	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:29:28,0:28:992:0:0:0,-8.42884,-89.2348	0/1:11:3,8:3:104:8:283:-22.5009,0,-6.39148	0/0:140:140,0:140:5011:0:0:0,-42.1442,-451.136	0/1:114:50,64:50:1791:64:2299:-172.854,0,-127.154	0/1:62:28,34:28:1000:34:1220:-91.4429,0,-71.6515	0/0:133:132,1:132:4717:1:21:0,-37.937,-422.588	0/1:55:29,26:29:1025:26:930:-67.4617,0,-76.004	0/1:77:36,41:36:1296:41:1472:-109.597,0,-93.7646	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:83:82,1:82:2917:1:36:0,-21.3872,-259.166	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.939	0/0:180:180,0:180:6464:0:0:0,-54.1854,-581.843	0/0:60:59,0:59:2103:0:0:0,-17.7608,-189.179	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:45:44,0:44:1572:0:0:0,-13.2453,-141.421	0/0:131:131,0:131:4682:0:0:0,-39.4349,-421.54	0/1:30:21,9:21:756:9:324:-20.475,0,-59.3363	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/0:73:73,0:73:2585:0:0:0,-21.9752,-232.898	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:55:32,23:32:1144:23:828:-58.2875,0,-86.7129	0/1:69:25,44:25:900:44:1580:-121.72,0,-60.5499	0/0:173:173,0:173:6155:0:0:0,-52.0782,-554.051	0/0:94:94,0:94:3346:0:0:0,-28.2968,-301.357
chr04	2135735	.	G	A	169903	PASS	AB=0.515635;ABP=13.399;AC=144;AF=0.774194;AN=186;AO=7972;CIGAR=1X;DP=10357;DPB=10357;DPRA=0;EPP=17123.4;EPPR=5132.12;GTI=0;LEN=1;MEANALT=1.03226;MQM=54.2903;MQMR=59.704;NS=93;NUMALT=1;ODDS=3.73008;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=285286;QR=84985;RO=2382;RPL=7950;RPP=17123.4;RPPR=5132.12;RPR=22;RUN=1;SAF=0;SAP=17314;SAR=7972;SRF=0;SRP=5175.46;SRR=2382;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:10,36:10:356:36:1288:-101.932,0,-18.3422	1/1:125:0,124:0:0:124:4448:-398.813,-37.3277,0	1/1:143:0,143:0:0:143:5119:-459.248,-43.0473,0	1/1:214:0,214:0:0:214:7661:-688.585,-64.4204,0	1/1:77:0,77:0:0:77:2756:-247.558,-23.1793,0	1/1:56:0,56:0:0:56:2016:-181.041,-16.8577,0	0/1:136:74,62:74:2638:62:2213:-157.605,0,-196.717	1/1:204:0,204:0:0:204:7289:-652.224,-61.4101,0	0/1:115:59,56:59:2099:56:2004:-145.429,0,-154.561	1/1:152:0,152:0:0:152:5451:-489.767,-45.7566,0	1/1:38:0,38:0:0:38:1364:-122.889,-11.4391,0	1/1:57:0,57:0:0:57:2022:-181.577,-17.1587,0	0/1:78:40,38:40:1432:38:1359:-98.6533,0,-105.496	1/1:69:0,69:0:0:69:2460:-220.793,-20.7711,0	0/1:86:34,52:34:1224:52:1856:-141.282,0,-84.5691	0/1:55:31,24:31:1112:24:864:-61.4152,0,-83.8347	1/1:52:0,52:0:0:52:1864:-167.07,-15.6536,0	1/1:72:1,71:1:36:71:2552:-225.299,-18.0759,0	0/1:27:15,12:15:536:12:424:-29.7812,0,-40.411	0/1:252:119,132:119:4240:132:4731:-349.731,0,-305.988	0/1:124:44,80:44:1576:80:2880:-220.393,0,-104.799	0/1:174:112,62:112:3991:62:2224:-147.933,0,-307	0/1:87:42,45:42:1504:45:1611:-118.973,0,-109.46	1/1:125:7,118:7:252:118:4240:-358.021,-14.5998,0	0/1:97:45,52:45:1612:52:1843:-136.703,0,-116.152	0/1:376:184,192:184:6582:192:6879:-505.567,0,-479.179	0/1:270:120,150:120:4287:150:5339:-398.136,0,-304.692	1/1:34:0,34:0:0:34:1220:-109.704,-10.235,0	0/1:363:180,183:180:6386:183:6539:-478.19,0,-465.497	0/1:161:92,69:92:3283:69:2472:-173.621,0,-247.196	1/1:168:0,168:0:0:168:6000:-539.048,-50.573,0	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:11:6,5:6:216:5:180:-13.204,0,-16.4792	1/1:9:0,9:0:0:9:324:-29.4317,-2.70927,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	.:.:.:.:.:.:.:.	1/1:176:0,176:0:0:176:6289:-564.974,-52.9813,0	1/1:254:1,253:1:36:253:9069:-810.63,-72.8633,0	1/1:67:0,67:0:0:67:2397:-215.063,-20.169,0	0/1:4:3,1:3:108:1:36:-2.38905,0,-8.87105	0/1:112:50,62:50:1773:62:2220:-165.926,0,-126.07	1/1:40:0,40:0:0:40:1440:-129.518,-12.0412,0	0/1:190:78,112:78:2787:112:4007:-302.913,0,-193.859	0/1:56:23,33:23:828:33:1180:-89.5196,0,-57.7936	1/1:61:0,61:0:0:61:2179:-196.065,-18.3628,0	0/1:117:32,85:32:1133:85:3056:-239.375,0,-67.0488	1/1:126:0,126:0:0:126:4512:-405.182,-37.9298,0	0/1:187:99,88:99:3548:88:3160:-227.948,0,-263.14	1/1:169:0,169:0:0:169:6063:-544.975,-50.8741,0	0/1:134:79,55:79:2810:55:1976:-137.563,0,-212.799	1/1:234:0,234:0:0:234:8354:-750.741,-70.441,0	0/1:9:4,5:4:140:5:180:-13.7453,0,-10.2353	0/1:168:66,102:66:2364:102:3664:-277.815,0,-162.418	0/1:109:42,67:42:1483:67:2391:-182.431,0,-100.95	1/1:7:0,7:0:0:7:248:-22.6112,-2.10721,0	1/1:151:0,151:0:0:151:5406:-485.576,-45.4555,0	1/1:70:0,69:0:0:69:2471:-221.827,-20.7711,0	1/1:7:0,7:0:0:7:248:-22.651,-2.10721,0	0/1:8:5,3:5:180:3:108:-7.60704,0,-14.1429	1/1:101:0,101:0:0:101:3604:-323.704,-30.404,0	0/1:120:47,73:47:1692:73:2596:-197.127,0,-116.441	0/1:8:6,2:6:207:2:72:-4.42355,0,-16.5587	1/1:263:0,263:0:0:263:9414:-846.119,-79.1709,0	0/1:210:102,108:102:3644:108:3859:-283.929,0,-264.924	0/1:74:36,38:36:1296:38:1356:-99.8903,0,-94.6677	1/1:89:0,89:0:0:89:3192:-287.218,-26.7917,0	0/1:181:84,97:84:2991:97:3458:-255.666,0,-214.834	0/1:150:101,49:101:3608:49:1748:-112.219,0,-279.752	1/1:18:0,18:0:0:18:639:-57.7591,-5.41854,0	1/1:122:0,122:0:0:122:4334:-388.743,-36.7257,0	1/1:116:0,116:0:0:116:4150:-373.326,-34.9195,0	0/1:17:6,11:6:212:11:392:-30.478,0,-14.3073	1/1:134:0,134:0:0:134:4809:-431.088,-40.338,0	0/1:79:30,49:30:1076:49:1752:-133.672,0,-73.3633	0/1:132:58,74:58:2063:74:2651:-198.236,0,-146.195	1/1:243:0,243:0:0:243:8696:-781.586,-73.1503,0	0/1:108:54,54:54:1893:54:1940:-141.199,0,-138.118	0/1:99:52,47:52:1847:47:1684:-120.396,0,-136.686	1/1:11:0,11:0:0:11:396:-35.8923,-3.31133,0	1/1:210:0,210:0:0:210:7536:-675.999,-63.2163,0	1/1:131:0,131:0:0:131:4661:-417.754,-39.4349,0	1/1:317:3,314:3:108:314:11254:-1000.26,-85.3513,0	1/1:82:0,82:0:0:82:2928:-263.185,-24.6845,0	1/1:67:0,67:0:0:67:2371:-213.212,-20.169,0	1/1:85:0,85:0:0:85:3020:-271.512,-25.5876,0	1/1:114:1,113:1:36:113:4056:-360.843,-30.7191,0	0/1:38:19,19:19:680:19:684:-50.2956,0,-50.0809	1/1:76:0,76:0:0:76:2728:-244.952,-22.8783,0	1/1:62:0,62:0:0:62:2228:-200.04,-18.6639,0	1/1:25:0,25:0:0:25:900:-81.1653,-7.52575,0	0/1:73:45,28:45:1608:28:1000:-68.2152,0,-123.03	0/1:52:41,11:41:1472:11:396:-20.2331,0,-117.118	1/1:151:0,151:0:0:151:5408:-485.862,-45.4555,0	1/1:88:0,88:0:0:88:3156:-282.946,-26.4906,0
chr04	2150912	.	TCAA	GCAT,GCAA	201219	PASS	AB=0.470423,0.528927;ABP=38.0781,36.5535;AC=140,48;AF=0.744681,0.255319;AN=188;AO=6932,2467;CIGAR=1X2M1X,1X3M;DP=9406;DPB=9415.25;DPRA=29.1894,1.14946;EPP=15055.7,5360.03;EPPR=0;GTI=2;LEN=4,1;MEANALT=1.6087,2.03922;MQM=59.9815,57.0219;MQMR=0;NS=94;NUMALT=2;ODDS=2.83962;PAIRED=0,0;PAIREDR=0;PAO=23.5,11;PQA=826,306;PQR=0;PRO=2.5;QA=246245,88145;QR=0;RO=0;RPL=0,0;RPP=15055.7,5360.03;RPPR=0;RPR=6932,2467;RUN=1,1;SAF=6932,2467;SAP=15055.7,5360.03;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:61:0,35,26:0:0:35,26:1211,932:-174.229,-75.8265,-65.2905,-98.7539,0,-90.9271	1/1:175:0,175,0:0:0:175,0:6250,0:-562.596,-52.6803,0,-562.596,-52.6803,-562.596	1/1:170:0,170,0:0:0:170,0:5989,0:-538.763,-51.1751,0,-538.763,-51.1751,-538.763	1/1:228:0,225,2:0:0:225,2:8011,72:-720.658,-67.7318,0,-714.784,-61.8577,-714.182	1/1:103:0,102,1:0:0:102,1:3633,36:-326.816,-30.7051,0,-323.88,-27.7693,-323.579	1/1:47:0,47,0:0:0:47,0:1668,0:-150.407,-14.1484,0,-150.407,-14.1484,-150.407	1/2:164:0,89,75:0:0:89,75:3166,2657:-474.621,-216.601,-189.809,-258.375,0,-235.798	1/1:112:0,112,0:0:0:112,0:3967,0:-357.223,-33.7154,0,-357.223,-33.7154,-357.223	1/2:91:0,46,45:0:0:46,45:1640,1608:-265.004,-131.319,-117.472,-134.042,0,-120.495	1/1:53:0,53,0:0:0:53,0:1886,0:-170.019,-15.9546,0,-170.019,-15.9546,-170.019	1/1:31:0,31,0:0:0:31,0:1087,0:-98.1371,-9.33193,0,-98.1371,-9.33193,-98.1371	1/1:57:0,57,0:0:0:57,0:2043,0:-184.142,-17.1587,0,-184.142,-17.1587,-184.142	1/2:49:0,24,25:0:0:24,25:857,900:-143.536,-73.667,-66.4423,-70.2268,0,-62.7011	1/1:50:0,50,0:0:0:50,0:1761,0:-158.771,-15.0515,0,-158.771,-15.0515,-158.771	1/2:61:0,35,26:0:0:35,26:1249,932:-178.183,-76.3619,-65.8258,-102.179,0,-94.3519	1/2:35:0,18,17:0:0:18,17:644,612:-102.68,-50.1665,-44.7479,-52.8723,0,-47.7548	1/1:40:0,40,0:0:0:40,0:1424,0:-128.457,-12.0412,0,-128.457,-12.0412,-128.457	1/1:40:0,40,0:0:0:40,0:1431,0:-129.088,-12.0412,0,-129.088,-12.0412,-129.088	1/2:22:0,8,14:0:0:8,14:275,504:-63.7203,-41.3948,-38.9866,-22.6747,0,-18.4603	1/2:341:0,155,186:0:0:155,186:5509,6668:-992.313,-543.397,-496.737,-449.272,0,-393.281	1/2:148:0,51,97:0:0:51,97:1796,3470:-428.803,-282.588,-267.236,-146.568,0,-117.368	1/2:161:0,60,100:0:0:60,100:2149,3543:-463.781,-288.521,-270.46,-175.257,0,-145.154	1/2:93:0,42,51:0:0:42,51:1508,1813:-271.008,-147.997,-135.354,-123.368,0,-108.016	1/2:106:0,93,13:0:0:93,13:3322,467:-308.647,-37.7991,-9.80331,-270.882,0,-266.969	1/2:86:0,44,42:0:0:44,42:1569,1505:-250.304,-122.405,-109.16,-127.896,0,-115.253	1/2:245:0,108,137:0:0:108,137:3836,4860:-707.819,-395.248,-362.737,-312.566,0,-271.325	1/2:231:0,106,125:0:0:106,125:3782,4467:-672.151,-363.837,-331.928,-308.67,0,-271.041	1/1:23:0,23,0:0:0:23,0:815,0:-73.6711,-6.92369,0,-73.6711,-6.92369,-73.6711	1/2:368:0,180,188:0:0:180,188:6380,6741:-1068.72,-548.971,-494.785,-520.109,0,-463.515	1/2:136:0,65,71:0:0:65,71:2275,2516:-389.534,-204.442,-184.875,-185.444,0,-164.07	1/1:147:0,147,0:0:0:147,0:5233,0:-471.111,-44.2514,0,-471.111,-44.2514,-471.111	1/2:6:0,3,3:0:0:3,3:108,104:-17.6149,-8.79589,-7.8928,-9.17208,0,-8.26899	2/2:13:0,1,12:0:0:1,12:36,432:-38.7534,-35.8159,-35.5149,-3.61236,-0.315115,0	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:10:0,1,9:0:0:1,9:36,324:-29.7036,-26.7662,-26.4652,-3.29724,0,-0.587975	1/1:155:0,155,0:0:0:155,0:5522,0:-497.107,-46.6597,0,-497.107,-46.6597,-497.107	1/1:177:0,176,0:0:0:176,0:6246,0:-561.892,-52.9813,0,-561.892,-52.9813,-561.892	1/1:29:0,29,0:0:0:29,0:1039,0:-93.7653,-8.72987,0,-93.7653,-8.72987,-93.7653	1/2:3:0,2,1:0:0:2,1:72,36:-9.17048,-3.29553,-2.69347,-6.23466,0,-5.93363	1/2:193:0,100,93:0:0:100,93:3544,3326:-559.295,-270.582,-240.479,-288.708,0,-260.712	1/1:23:0,23,0:0:0:23,0:809,0:-73.1294,-6.92369,0,-73.1294,-6.92369,-73.1294	1/2:150:0,72,78:0:0:72,78:2552,2804:-436.702,-228.815,-207.14,-208.244,0,-184.764	1/2:50:0,23,26:0:0:23,26:818,921:-141.683,-75.0191,-68.0954,-66.7057,0,-58.8789	1/1:52:0,52,0:0:0:52,0:1848,0:-166.598,-15.6536,0,-166.598,-15.6536,-166.598	1/2:108:0,43,65:0:0:43,65:1522,2328:-314.104,-190.131,-177.187,-124.328,0,-104.761	1/1:168:0,168,0:0:0:168,0:5958,0:-536.332,-50.573,0,-536.332,-50.573,-536.332	1/2:187:0,64,123:0:0:64,123:2279,4389:-543.615,-357.864,-338.598,-186.107,0,-149.08	1/1:157:0,156,1:0:0:156,1:5552,36:-499.468,-46.9607,0,-496.531,-44.0037,-496.23	1/2:115:0,49,66:0:0:49,66:1740,2343:-332.606,-190.829,-176.078,-142.074,0,-122.206	1/1:245:0,245,0:0:0:245,0:8693,0:-782.37,-73.7524,0,-782.37,-73.7524,-782.37	2/2:3:0,0,3:0:0:0,3:0,108:-10.0739,-10.0739,-10.0739,-0.90309,-0.90309,0	1/2:192:0,79,113:0:0:79,113:2804,4042:-557.174,-328.711,-304.929,-228.819,0,-194.802	1/2:36:0,13,23:0:0:13,23:468,824:-105.702,-67.5147,-63.6013,-38.5463,0,-31.6226	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:221:0,221,0:0:0:221,0:7865,0:-707.881,-66.5276,0,-707.881,-66.5276,-707.881	1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chr04	2150966	.	C	T	145417	PASS	AB=0.47667;ABP=24.5914;AC=140;AF=0.744681;AN=188;AO=6934;CIGAR=1X;DP=9348;DPB=9348;DPRA=29.0093;EPP=15060;EPPR=5242.77;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.9866;MQMR=57.0472;NS=94;NUMALT=1;ODDS=1.99505;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247266;QR=85566;RO=2413;RPL=6934;RPP=15060;RPPR=5242.77;RPR=0;RUN=1;SAF=6934;SAP=15060;SAR=0;SRF=2413;SRP=5242.77;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:27,35:27:959:35:1247:-93.8702,0,-67.7312	1/1:175:0,175:0:0:175:6231:-560.887,-52.6803,0	1/1:171:0,171:0:0:171:6135:-552.247,-51.4761,0	1/1:230:2,228:2:72:228:8129:-724.79,-62.401,0	1/1:107:1,106:1:36:106:3775:-336.353,-28.6136,0	1/1:48:0,48:0:0:48:1705:-153.735,-14.4494,0	0/1:161:73,88:73:2568:88:3128:-233.279,0,-182.748	1/1:111:0,111:0:0:111:3961:-356.681,-33.4143,0	0/1:95:45,50:45:1589:50:1777:-131.613,0,-114.561	1/1:55:0,55:0:0:55:1943:-175.143,-16.5567,0	1/1:29:0,29:0:0:29:1036:-93.5433,-8.72987,0	1/1:57:0,57:0:0:57:2027:-182.702,-17.1587,0	0/1:51:26,25:26:923:25:900:-65.9685,0,-67.895	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:63:26,37:26:936:37:1319:-100.046,0,-65.5841	0/1:34:17,17:17:612:17:612:-45.1784,0,-45.0489	1/1:42:0,42:0:0:42:1498:-135.114,-12.6433,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:22:14,8:14:496:8:288:-19.6447,0,-38.2913	0/1:334:180,154:180:6353:154:5493:-393.917,0,-470.601	0/1:150:99,51:99:3520:51:1828:-119.646,0,-271.028	0/1:160:99,61:99:3516:61:2196:-149.74,0,-268.384	0/1:91:51,40:51:1806:40:1427:-101.33,0,-135.336	0/1:108:15,93:15:518:93:3318:-266.326,0,-14.0308	0/1:87:42,45:42:1480:45:1588:-117.019,0,-106.813	0/1:241:136,105:136:4834:105:3747:-264.882,0,-360.46	0/1:230:122,108:122:4345:108:3853:-277.726,0,-320.911	1/1:23:0,23:0:0:23:817:-73.8508,-6.92369,0	0/1:372:188,184:188:6674:184:6591:-481.286,0,-486.904	0/1:130:68,62:68:2432:62:2200:-159.129,0,-179.058	1/1:144:0,144:0:0:144:5130:-461.844,-43.3483,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.2642	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.2764	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4652	1/1:155:0,155:0:0:155:5532:-498.004,-46.6597,0	1/1:174:0,174:0:0:174:6194:-557.559,-52.3792,0	1/1:29:0,29:0:0:29:1044:-94.2733,-8.72987,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69347	0/1:191:90,101:90:3215:101:3592:-265.989,0,-231.822	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:150:78,72:78:2760:72:2567:-186.125,0,-202.902	0/1:49:25,24:25:882:24:851:-62.159,0,-64.8986	1/1:58:0,58:0:0:58:2063:-185.94,-17.4597,0	0/1:105:65,40:65:2273:40:1436:-97.9295,0,-173.156	1/1:161:0,161:0:0:161:5721:-515.008,-48.4658,0	0/1:174:110,63:110:3922:63:2246:-149.967,0,-300.578	1/1:157:0,157:0:0:157:5596:-503.763,-47.2617,0	0/1:109:60,49:60:2141:49:1752:-125.152,0,-160.062	1/1:242:0,242:0:0:242:8678:-781.009,-72.8493,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0739	0/1:189:106,83:106:3783:83:2958:-209.559,0,-282.086	0/1:37:21,16:21:728:16:572:-40.6753,0,-54.6989	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:216:0,216:0:0:216:7715:-694.382,-65.0225,0	1/1:61:0,61:0:0:61:2171:-195.656,-18.3628,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4168	1/1:60:0,60:0:0:60:2115:-190.617,-18.0618,0	0/1:81:33,48:33:1175:48:1724:-131.062,0,-81.5059	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.312	1/1:215:0,215:0:0:215:7676:-690.875,-64.7215,0	0/1:152:72,80:72:2584:80:2876:-213.319,0,-186.793	0/1:68:30,38:30:1059:38:1360:-102.185,0,-75.0549	1/1:104:1,103:1:36:103:3651:-325.194,-27.7093,0	0/1:168:79,89:79:2777:89:3124:-230.813,0,-199.289	0/1:71:44,27:44:1568:27:968:-66.0642,0,-120.021	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4472	1/1:178:0,178:0:0:178:6319:-568.775,-53.5833,0	0/1:88:48,40:48:1716:40:1423:-101.875,0,-127.272	0/1:148:57,91:57:2003:91:3210:-244.568,0,-135.33	1/1:210:0,210:0:0:210:7495:-674.591,-63.2163,0	0/1:104:66,38:66:2323:38:1336:-89.1612,0,-177.589	0/1:113:74,39:74:2613:39:1391:-91.4719,0,-200.824	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:124:1,123:1:36:123:4388:-391.497,-33.7312,0	1/1:163:0,163:0:0:163:5821:-524.004,-49.0679,0	1/1:255:2,253:2:72:253:9015:-804.492,-69.9259,0	1/1:97:0,97:0:0:97:3438:-309.632,-29.1999,0	1/1:56:0,56:0:0:56:1997:-180.002,-16.8577,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:110:0,110:0:0:110:3925:-353.443,-33.1133,0	0/1:29:20,9:20:685:9:324:-20.776,0,-53.0267	1/1:52:0,52:0:0:52:1855:-167.229,-15.6536,0	1/1:44:0,44:0:0:44:1556:-140.329,-13.2453,0	1/1:22:0,22:0:0:22:781:-70.6129,-6.62266,0	0/1:55:26,29:26:915:29:1029:-76.3645,0,-66	0/1:53:31,22:31:1087:22:792:-55.6511,0,-82.1579	1/1:164:0,164:0:0:164:5854:-526.969,-49.3689,0	1/1:82:0,82:0:0:82:2943:-265.103,-24.6845,0
chr04	2309971	.	T	C	45659.6	PASS	AB=0.542597;ABP=79.2292;AC=44;AF=0.234043;AN=188;AO=2634;CIGAR=1X;DP=9731;DPB=9731;DPRA=1.20908;EPP=5722.67;EPPR=15405.3;GTI=3;LEN=1;MEANALT=1.04255;MQM=59.9142;MQMR=59.992;NS=94;NUMALT=1;ODDS=0.158319;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94295;QR=253903;RO=7093;RPL=0;RPP=5722.67;RPPR=15405.3;RPR=2634;RUN=1;SAF=2634;SAP=5722.67;SAR=0;SRF=7093;SRP=15405.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:103:56,47:56:2008:47:1684:-120.841,0,-149.987	0/0:103:102,1:102:3636:1:36:0,-27.4078,-323.848	0/0:286:286,0:286:10214:0:0:0,-86.0946,-919.185	0/0:272:270,2:270:9657:2:72:0,-75.0434,-862.234	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:88:30,58:30:1080:58:2069:-159.988,0,-71.0226	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/1:134:63,71:63:2256:71:2534:-187.97,0,-162.965	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:83:83,0:83:2954:0:0:0,-24.9855,-266.093	0/1:84:42,42:42:1508:42:1499:-109.917,0,-110.728	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:98:44,54:44:1576:54:1936:-145.015,0,-112.631	0/1:67:28,39:28:1004:39:1404:-106.49,0,-70.5069	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.61	0/1:32:12,20:12:432:20:716:-55.1348,0,-29.5882	0/1:255:109,146:109:3893:146:5230:-394.075,0,-273.8	0/1:154:70,83:70:2512:83:2972:-221.295,0,-179.907	0/1:173:58,115:58:2065:115:4100:-317.101,0,-134.041	0/1:146:71,75:71:2548:75:2684:-197.855,0,-185.62	0/0:52:50,2:50:1785:2:72:0,-8.81684,-154.094	0/1:144:54,90:54:1932:90:3236:-248.11,0,-130.808	0/1:285:155,130:155:5525:130:4653:-332.975,0,-411.58	0/1:343:148,195:148:5292:195:6965:-523.659,0,-373.163	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:280:140,139:140:5024:139:4992:-365.219,0,-368.107	0/1:70:34,36:34:1224:36:1292:-95.5117,0,-89.3949	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:16:3,13:3:108:13:468:-37.6432,0,-5.25869	0/0:183:183,0:183:6576:0:0:0,-55.0885,-591.918	0/0:86:86,0:86:3069:0:0:0,-25.8886,-276.437	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:143:63,80:63:2256:80:2868:-215.31,0,-160.256	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:227:97,130:97:3460:130:4652:-350.509,0,-243.277	0/1:55:34,21:34:1220:21:752:-51.4496,0,-93.5502	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/1:164:94,70:94:3368:70:2496:-175.516,0,-253.967	0/0:173:173,0:173:6212:0:0:0,-52.0782,-559.068	0/1:121:69,52:69:2448:52:1872:-132.334,0,-184.149	0/0:113:113,0:113:4025:0:0:0,-34.0164,-362.438	0/1:149:81,68:81:2885:68:2431:-174.075,0,-215.032	0/0:200:200,0:200:7161:0:0:0,-60.206,-644.544	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:139:60,79:60:2156:79:2829:-212.986,0,-152.464	0/1:65:34,31:34:1224:31:1116:-81.1847,0,-90.9001	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:182:182,0:182:6513:0:0:0,-54.7875,-586.252	0/0:59:58,1:58:2071:1:36:0,-14.1625,-183.062	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/1:89:40,49:40:1440:49:1764:-132.252,0,-103.106	0/0:16:16,0:16:553:0:0:0,-4.81648,-50.094	0/0:211:211,0:211:7544:0:0:0,-63.5173,-679	0/1:181:72,109:72:2584:109:3877:-294.57,0,-178.322	0/1:52:23,29:23:824:29:1040:-78.2608,0,-58.8298	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.92	0/1:186:88,98:88:3137:98:3524:-261.377,0,-226.563	0/1:192:67,125:67:2404:125:4480:-345.536,0,-158.819	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.517	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.821	0/1:80:34,46:34:1224:46:1634:-123.265,0,-86.3846	0/0:135:135,0:135:4829:0:0:0,-40.639,-434.763	0/0:194:194,0:194:6915:0:0:0,-58.3998,-622.415	0/1:172:70,102:70:2508:102:3660:-277.826,0,-174.195	0/1:109:58,51:58:2076:51:1815:-130.818,0,-154.298	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/0:188:188,0:188:6748:0:0:0,-56.5936,-607.392	0/0:209:209,0:209:7461:0:0:0,-62.9153,-671.532	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:96:96,0:96:3439:0:0:0,-28.8989,-309.722	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.002	0/0:143:143,0:143:5132:0:0:0,-43.0473,-462.02	0/1:32:18,14:18:640:14:504:-36.0651,0,-48.2964	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:70:69,0:69:2463:0:0:0,-20.7711,-221.712	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:71:38,33:38:1368:33:1188:-85.8555,0,-102.048	0/1:82:24,58:24:864:58:2067:-161.614,0,-53.3981	0/0:210:209,0:209:7493:0:0:0,-62.9153,-674.198	0/0:128:128,0:128:4600:0:0:0,-38.5318,-414.162
chr04	2346180	.	AAA	GAG,CAA	166488	PASS	AB=0.429613,0.567226;ABP=180.002,164.463;AC=143,43;AF=0.768817,0.231183;AN=186;AO=5524,2341;CIGAR=1X1M1X,1X2M;DP=7890;DPB=7890.67;DPRA=0,1.62785;EPP=11998.2,5086.43;EPPR=11.6962;GTI=3;LEN=3,1;MEANALT=1.75269,2.26531;MQM=59.9412,59.985;MQMR=52.5;NS=93;NUMALT=2;ODDS=1.66363;PAIRED=0,0;PAIREDR=0;PAO=1,0.5;PQA=36,0;PQR=0;PRO=0.5;QA=195262,83635;QR=137;RO=4;RPL=0,0;RPP=11998.2,5086.43;RPPR=11.6962;RPR=5524,2341;RUN=1,1;SAF=0,0;SAP=11998.2,5086.43;SAR=5524,2341;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:105:0,45,60:0:0:45,60:1601,2136:-304.924,-174.446,-160.9,-130.833,0,-112.771	1/1:34:0,34,0:0:0:34,0:1219,0:-110.012,-10.235,0,-110.012,-10.235,-110.012	1/1:77:0,77,0:0:0:77,0:2733,0:-246.212,-23.1793,0,-246.212,-23.1793,-246.212	1/1:220:0,219,1:0:0:219,1:7726,32:-695.042,-65.9256,0,-692.464,-63.3672,-692.163	1/1:45:0,45,0:0:0:45,0:1604,0:-144.651,-13.5464,0,-144.651,-13.5464,-144.651	1/1:53:0,52,0:0:0:52,0:1823,0:-163.988,-15.6536,0,-163.988,-15.6536,-163.988	1/2:142:0,62,79:0:0:62,79:2201,2823:-409.662,-230.325,-211.661,-179.489,0,-155.708	1/1:125:0,125,0:0:0:125,0:4370,0:-393.479,-37.6288,0,-393.479,-37.6288,-393.479	1/2:116:0,65,51:0:0:65,51:2293,1809:-334.447,-147.737,-128.17,-187.064,0,-171.711	1/1:42:0,41,0:0:0:41,0:1462,0:-131.672,-12.3422,0,-131.672,-12.3422,-131.672	1/1:45:0,44,0:0:0:44,0:1563,0:-140.689,-13.2453,0,-140.689,-13.2453,-140.689	1/1:123:0,122,0:0:0:122,0:4281,0:-385.089,-36.7257,0,-385.089,-36.7257,-385.089	1/2:61:0,22,38:0:0:22,38:772,1352:-173.046,-110.22,-103.598,-62.857,0,-51.4178	1/1:22:0,22,0:0:0:22,0:774,0:-69.9807,-6.62266,0,-69.9807,-6.62266,-69.9807	1/2:57:0,21,36:0:0:21,36:729,1296:-165.362,-106.107,-99.7852,-59.6067,0,-48.7696	1/2:62:0,40,22:0:0:40,22:1421,788:-180.095,-64.6221,-52.5809,-115.829,0,-109.206	1/1:32:0,32,0:0:0:32,0:1136,0:-102.548,-9.63296,0,-102.548,-9.63296,-102.548	1/1:16:0,16,0:0:0:16,0:574,0:-51.9943,-4.81648,0,-51.9943,-4.81648,-51.9943	1/2:27:0,15,12:0:0:15,12:533,423:-78.2275,-34.7927,-30.2773,-43.7884,0,-40.176	1/2:166:0,67,99:0:0:67,99:2375,3547:-483.119,-289.636,-269.467,-193.839,0,-164.037	1/2:200:0,76,123:0:0:76,123:2697,4403:-578.907,-359.165,-336.287,-219.846,0,-182.82	1/2:155:0,28,127:0:0:28,127:1000,4506:-449.005,-367.475,-359.046,-81.886,0,-43.6552	1/2:112:0,57,54:0:0:57,54:2008,1936:-321.459,-157.979,-140.821,-163.553,0,-147.297	1/1:84:0,80,3:0:0:80,3:2829,108:-253.144,-24.0824,0,-244.331,-15.2103,-243.428	1/2:110:1,38,71:1:31:38,71:1343,2517:-312.034,-202.963,-193.693,-107.281,0,-88.0761	1/2:265:2,147,116:2:70:147,116:5169,4160:-753.766,-333.617,-295.061,-415.06,0,-385.836	1/2:221:0,79,142:0:0:79,142:2807,5075:-642.854,-414.12,-390.338,-229.09,0,-186.344	1/1:25:0,25,0:0:0:25,0:891,0:-80.5099,-7.52575,0,-80.5099,-7.52575,-80.5099	1/2:301:0,106,195:0:0:106,195:3776,6974:-876.794,-569.021,-537.112,-308.129,0,-249.429	1/2:144:0,64,79:0:0:64,79:2276,2832:-416.138,-231.086,-211.82,-185.156,0,-161.375	1/1:120:0,120,0:0:0:120,0:4233,0:-381.144,-36.1236,0,-381.144,-36.1236,-381.144	1/2:10:0,9,1:0:0:9,1:316,36:-29.0073,-3.29724,-0.587975,-26.069,0,-25.768	1/2:28:0,5,23:0:0:5,23:180,824:-82.247,-67.5596,-66.0545,-15.0469,0,-8.12322	.:.:.:.:.:.:.:.	1/1:12:0,12,0:0:0:12,0:419,0:-38.043,-3.61236,0,-38.043,-3.61236,-38.043	1/2:23:0,18,5:0:0:18,5:621,176:-65.1218,-14.6799,-9.26133,-50.7923,0,-49.2871	1/1:202:0,202,0:0:0:202,0:7159,0:-644.355,-60.8081,0,-644.355,-60.8081,-644.355	1/1:103:0,103,0:0:0:103,0:3646,0:-328.344,-31.0061,0,-328.344,-31.0061,-328.344	1/1:24:0,24,0:0:0:24,0:839,0:-75.8267,-7.22472,0,-75.8267,-7.22472,-75.8267	1/2:9:0,3,6:0:0:3,6:105,216:-26.524,-17.9843,-17.0812,-8.89288,0,-7.0867	1/2:130:0,50,80:0:0:50,80:1776,2867:-378.9,-234.184,-219.132,-145.072,0,-120.99	1/1:16:0,16,0:0:0:16,0:556,0:-50.3663,-4.81648,0,-50.3663,-4.81648,-50.3663	1/2:194:0,84,110:0:0:84,110:3000,3947:-566.84,-322.252,-296.965,-244.946,0,-211.832	1/2:40:0,23,17:0:0:23,17:809,612:-116.143,-50.2959,-43.3722,-66.2038,0,-61.0862	1/1:47:0,47,0:0:0:47,0:1632,0:-147.153,-14.1484,0,-147.153,-14.1484,-147.153	1/2:142:0,70,72:0:0:70,72:2477,2564:-411.09,-209.334,-188.262,-202.111,0,-180.437	1/1:45:0,45,0:0:0:45,0:1596,0:-143.922,-13.5464,0,-143.922,-13.5464,-143.922	1/2:192:0,85,107:0:0:85,107:3001,3832:-557.218,-312.866,-287.279,-244.707,0,-212.497	1/1:101:0,101,0:0:0:101,0:3569,0:-321.421,-30.404,0,-321.421,-30.404,-321.421	1/2:73:0,39,34:0:0:39,34:1387,1201:-211.193,-98.1586,-86.4185,-113.388,0,-103.153	1/1:155:0,153,1:0:0:153,1:5439,36:-489.291,-46.0576,0,-486.354,-43.1102,-486.053	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/2:70:0,47,23:0:0:47,23:1674,824:-204.001,-67.5596,-53.4112,-136.799,0,-129.875	1/2:61:0,20,41:0:0:20,41:708,1463:-177.293,-119.623,-113.602,-58.0246,0,-45.6824	1/1:10:0,10,0:0:0:10,0:354,0:-32.2,-3.0103,0,-32.2,-3.0103,-32.2	1/1:114:0,113,0:0:0:113,0:3958,0:-356.205,-34.0164,0,-356.205,-34.0164,-356.205	1/1:69:0,69,0:0:0:69,0:2447,0:-220.485,-20.7711,0,-220.485,-20.7711,-220.485	1/1:14:0,14,0:0:0:14,0:483,0:-43.7967,-4.21442,0,-43.7967,-4.21442,-43.7967	1/2:17:0,3,14:0:0:3,14:105,504:-50.0249,-41.4837,-40.5806,-8.89288,0,-4.67846	1/1:86:0,86,0:0:0:86,0:3039,0:-273.741,-25.8886,0,-273.741,-25.8886,-273.741	1/2:66:0,28,38:0:0:28,38:995,1337:-190.27,-109.189,-100.76,-81.4351,0,-69.9959	1/1:11:0,11,0:0:0:11,0:394,0:-35.8015,-3.31133,0,-35.8015,-3.31133,-35.8015	1/1:140:0,139,0:0:0:139,0:4897,0:-440.609,-41.8432,0,-440.609,-41.8432,-440.609	1/2:114:0,64,50:0:0:64,50:2268,1768:-329.11,-144.349,-125.083,-185.115,0,-170.063	1/2:61:0,18,42:0:0:18,42:633,1504:-174.284,-122.759,-117.34,-51.6229,0,-38.9797	1/1:69:0,69,0:0:0:69,0:2404,0:-216.614,-20.7711,0,-216.614,-20.7711,-216.614	1/2:121:0,59,60:0:0:59,60:2116,2152:-348.219,-175.627,-157.866,-172.69,0,-154.628	1/2:80:0,13,67:0:0:13,67:468,2412:-235.353,-197.167,-193.253,-38.5463,0,-18.3772	1/1:26:0,26,0:0:0:26,0:925,0:-83.568,-7.82678,0,-83.568,-7.82678,-83.568	1/1:40:0,40,0:0:0:40,0:1423,0:-128.367,-12.0412,0,-128.367,-12.0412,-128.367	1/1:18:0,18,0:0:0:18,0:636,0:-57.568,-5.41854,0,-57.568,-5.41854,-57.568	1/2:30:0,19,11:0:0:19,11:673,396:-87.4912,-32.6714,-26.9518,-55.1775,0,-51.8662	1/1:133:0,133,0:0:0:133,0:4714,0:-424.423,-40.037,0,-424.423,-40.037,-424.423	1/2:90:1,37,51:1:36:37,51:1293,1824:-250.711,-145.832,-137.631,-102.275,0,-89.8602	1/1:158:0,158,0:0:0:158,0:5562,0:-500.711,-47.5627,0,-500.711,-47.5627,-500.711	1/1:88:0,88,0:0:0:88,0:3130,0:-281.922,-26.4906,0,-281.922,-26.4906,-281.922	1/2:126:0,41,85:0:0:41,85:1437,3036:-364.812,-247.883,-235.541,-117.282,0,-91.6942	1/2:37:0,7,30:0:0:7,30:252,1063:-107.513,-86.9499,-84.8427,-20.9217,0,-11.8908	1/2:14:0,12,2:0:0:12,2:424,72:-40.7603,-6.23466,-2.6223,-34.8845,0,-34.2824	1/1:54:0,54,0:0:0:54,0:1891,0:-170.465,-16.2556,0,-170.465,-16.2556,-170.465	1/1:91:0,90,1:0:0:90,1:3158,36:-284.085,-27.0927,0,-281.147,-23.7955,-280.846	1/1:278:0,275,1:0:0:275,1:9746,36:-876.736,-82.7833,0,-873.798,-79.8325,-873.497	1/1:49:0,48,0:0:0:48,0:1683,0:-151.483,-14.4494,0,-151.483,-14.4494,-151.483	1/1:67:0,67,0:0:0:67,0:2381,0:-214.548,-20.169,0,-214.548,-20.169,-214.548	1/1:53:0,53,0:0:0:53,0:1871,0:-168.668,-15.9546,0,-168.668,-15.9546,-168.668	1/1:144:0,143,1:0:0:143,1:5069,36:-456.001,-43.0473,0,-453.063,-39.75,-452.762	1/2:20:0,13,7:0:0:13,7:451,252:-57.5732,-20.9217,-17.0084,-37.0067,0,-34.8995	1/1:70:0,70,0:0:0:70,0:2473,0:-222.823,-21.0721,0,-222.823,-21.0721,-222.823	1/1:73:0,73,0:0:0:73,0:2571,0:-231.609,-21.9752,0,-231.609,-21.9752,-231.609	1/1:24:0,24,0:0:0:24,0:854,0:-77.1803,-7.22472,0,-77.1803,-7.22472,-77.1803	1/2:60:0,38,22:0:0:38,22:1305,788:-170.571,-64.6221,-53.183,-106.302,0,-99.6789	1/2:54:0,26,28:0:0:26,28:928,996:-157.182,-81.526,-73.6993,-76.0119,0,-67.5831	1/1:18:0,18,0:0:0:18,0:634,0:-57.3868,-5.41854,0,-57.3868,-5.41854,-57.3868	1/1:112:0,111,0:0:0:111,0:3945,0:-354.961,-33.4143,0,-354.961,-33.4143,-354.961
chr04	2347902	.	AA	GA	166044	PASS	AB=0.537559;ABP=49.9875;AC=145;AF=0.771277;AN=188;AO=7639;CIGAR=1X1M;DP=9443;DPB=9443;DPRA=0;EPP=16340;EPPR=3879.09;GTI=3;LEN=1;MEANALT=1.17021;MQM=59.9525;MQMR=59.9787;NS=94;NUMALT=1;ODDS=1.02132;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273284;QR=63613;RO=1785;RPL=29;RPP=16340;RPPR=3879.09;RPR=7610;RUN=1;SAF=7639;SAP=16590.9;SAR=0;SRF=1785;SRP=3879.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:7,8:7:237:8:288:-21.752,0,-17.1436	1/1:146:0,146:0:0:146:5224:-470.298,-43.9504,0	1/1:136:0,136:0:0:136:4832:-435.034,-40.9401,0	1/1:255:0,252:0:0:252:9015:-811.005,-75.8596,0	1/1:30:2,25:2:72:25:900:-74.4844,-1.65085,0	1/1:44:0,44:0:0:44:1576:-142.118,-13.2453,0	0/1:92:43,49:43:1544:49:1733:-128.558,0,-111.559	1/1:133:1,131:1:36:131:4689:-418.567,-36.4975,0	0/1:52:22,30:22:788:30:1076:-81.4993,0,-55.5914	1/1:132:0,132:0:0:132:4701:-423.247,-39.736,0	1/1:95:0,95:0:0:95:3373:-303.7,-28.5979,0	1/1:64:0,64:0:0:64:2300:-207.225,-19.2659,0	0/1:78:35,43:35:1260:43:1530:-114.508,0,-90.2251	1/1:81:0,81:0:0:81:2886:-259.976,-24.3834,0	0/1:69:38,31:38:1364:31:1112:-79.6203,0,-102.29	0/1:50:26,24:26:915:24:860:-62.6703,0,-67.6132	1/1:99:0,99:0:0:99:3511:-316.199,-29.802,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:39:23,16:23:809:16:572:-40.0733,0,-61.3892	0/1:269:120,149:120:4280:149:5352:-400.833,0,-304.4	0/1:118:72,46:72:2576:46:1640:-112.367,0,-196.568	0/1:82:40,42:40:1426:42:1487:-109.439,0,-103.953	0/1:48:21,27:21:739:27:972:-73.3485,0,-52.3823	1/1:130:8,122:8:288:122:4353:-365.677,-12.8665,0	0/1:39:11,28:11:396:28:1004:-78.9357,0,-24.214	0/1:270:124,145:124:4432:145:5161:-383.022,0,-317.714	0/1:167:72,94:72:2557:94:3349:-251.296,0,-180.049	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:169:77,92:77:2724:92:3304:-246.704,0,-194.528	0/1:110:48,62:48:1722:62:2228:-167.671,0,-122.152	1/1:169:0,169:0:0:169:6064:-545.861,-50.8741,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:18:11,7:11:394:7:252:-17.6104,0,-30.383	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:13:5,8:5:178:8:288:-22.354,0,-12.4553	1/1:223:1,221:1:25:221:7914:-709.763,-64.5688,0	1/1:246:0,246:0:0:246:8807:-792.615,-74.0534,0	1/1:66:0,65:0:0:65:2336:-210.248,-19.567,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:236:124,112:124:4426:112:4028:-291.663,0,-327.469	1/1:56:0,56:0:0:56:2007:-180.898,-16.8577,0	0/1:94:42,52:42:1486:52:1852:-138.659,0,-105.736	0/1:87:47,40:47:1675:40:1436:-103.334,0,-124.847	1/1:57:0,57:0:0:57:2035:-183.422,-17.1587,0	0/1:93:32,61:32:1141:61:2192:-169.55,0,-75.0024	1/1:105:0,105:0:0:105:3760:-338.56,-31.6082,0	0/1:108:35,73:35:1225:73:2616:-203.176,0,-78.0104	1/1:113:0,112:0:0:112:4001:-359.918,-33.7154,0	0/1:187:79,108:79:2805:108:3864:-291.606,0,-196.397	1/1:151:0,151:0:0:151:5412:-487.209,-45.4555,0	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:119:48,71:48:1717:71:2540:-193.029,0,-118.992	0/1:23:15,8:15:538:8:284:-18.9793,0,-41.8321	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:117:0,116:0:0:116:4160:-374.222,-34.9195,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	0/1:41:14,27:14:504:27:948:-73.2902,0,-33.3559	1/1:84:0,84:0:0:84:3003:-270.501,-25.2865,0	0/1:124:63,60:63:2242:60:2143:-155.751,0,-164.655	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:502:1,498:1:36:498:17774:-1595.71,-146.963,0	0/1:170:76,94:76:2715:94:3353:-250.804,0,-193.417	0/1:76:34,42:34:1200:42:1504:-112.776,0,-85.4251	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	0/1:185:71,113:71:2517:113:4052:-309.226,0,-171.14	0/1:75:46,29:46:1619:29:1040:-71.3371,0,-123.419	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	0/1:36:17,19:17:608:19:680:-50.6921,0,-44.2152	1/1:130:1,129:1:36:129:4575:-408.208,-35.5356,0	0/1:70:34,36:34:1224:36:1296:-95.8718,0,-89.3949	1/1:141:1,140:1:36:140:5016:-447.988,-38.847,0	1/1:205:0,205:0:0:205:7344:-661.008,-61.7112,0	0/1:41:13,28:13:468:28:994:-77.3012,0,-30.1174	0/1:104:54,50:54:1928:50:1788:-129.895,0,-142.489	0/1:25:5,20:5:180:20:720:-57.603,0,-9.02631	1/1:169:0,169:0:0:169:6048:-544.412,-50.8741,0	1/1:155:0,154:0:0:154:5516:-496.202,-46.3586,0	1/1:223:0,223:0:0:223:7979:-718.132,-67.1297,0	1/1:86:0,86:0:0:86:3063:-275.899,-25.8886,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:94:0,94:0:0:94:3377:-304.145,-28.2968,0	1/1:143:1,142:1:36:142:5096:-455.183,-39.449,0	0/1:34:18,16:18:648:16:572:-41.5784,0,-48.4169	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	1/1:72:0,72:0:0:72:2580:-232.441,-21.6742,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:93:41,52:41:1476:52:1864:-140.043,0,-105.14	0/1:82:50,32:50:1789:32:1144:-78.4987,0,-136.607	1/1:193:0,193:0:0:193:6901:-621.156,-58.0988,0	1/1:107:0,107:0:0:107:3842:-345.973,-32.2102,0
chr04	2364594	.	CCC	CTC,CTT	217215	PASS	AB=0.458022,0.537706;ABP=74.6578,60.8153;AC=145,43;AF=0.771277,0.228723;AN=188;AO=7542,2528;CIGAR=1M1X1M,1M2X;DP=10109;DPB=10109;DPRA=0,1.03997;EPP=16380.3,5492.49;EPPR=18.2106;GTI=1;LEN=1,2;MEANALT=1.76596,2.35417;MQM=59.9879,59.2488;MQMR=60;NS=94;NUMALT=2;ODDS=0.292766;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=269692,89472;QR=229;RO=7;RPL=0,0;RPP=16380.3,5492.49;RPPR=18.2106;RPR=7542,2528;RUN=1,1;SAF=7542,2528;SAP=16380.3,5492.49;SAR=0,0;SRF=7;SRP=18.2106;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,18,17:0:0:18,17:646,608:-102.612,-49.9168,-44.4983,-53.0528,0,-47.9353	1/1:162:0,162,0:0:0:162,0:5791,0:-521.305,-48.7669,0,-521.305,-48.7669,-521.305	1/1:104:0,103,0:0:0:103,0:3681,0:-331.13,-31.0061,0,-331.13,-31.0061,-331.13	1/1:120:0,120,0:0:0:120,0:4285,0:-385.829,-36.1236,0,-385.829,-36.1236,-385.829	1/1:55:0,52,0:0:0:52,0:1864,0:-167.68,-15.6536,0,-167.68,-15.6536,-167.68	1/1:55:0,55,0:0:0:55,0:1968,0:-177.395,-16.5567,0,-177.395,-16.5567,-177.395	1/2:169:0,81,88:0:0:81,88:2883,3132:-490.4,-255.432,-231.049,-235.323,0,-208.832	1/1:211:2,209,0:2:72:209,0:7476,0:-666.047,-56.6806,0,-666.649,-62.9153,-672.524	1/2:87:0,46,41:0:0:46,41:1644,1429:-250.253,-116.204,-102.357,-134.401,0,-122.059	1/1:85:0,83,1:0:0:83,1:2963,36:-266.553,-24.9855,0,-263.615,-22.0381,-263.314	1/1:144:0,144,0:0:0:144,0:5161,0:-464.63,-43.3483,0,-464.63,-43.3483,-464.63	1/1:103:0,103,0:0:0:103,0:3675,0:-330.954,-31.0061,0,-330.954,-31.0061,-330.954	1/2:106:0,44,62:0:0:44,62:1584,2214:-310.109,-180.861,-167.616,-129.606,0,-110.942	1/1:129:0,129,0:0:0:129,0:4599,0:-414.074,-38.8329,0,-414.074,-38.8329,-414.074	1/2:80:0,32,48:0:0:32,48:1148,1698:-232.276,-138.636,-129.003,-93.9969,0,-79.5474	1/2:144:0,73,71:0:0:73,71:2628,2540:-421.561,-207.128,-185.153,-214.791,0,-193.418	1/1:98:0,98,0:0:0:98,0:3489,0:-314.221,-29.5009,0,-314.221,-29.5009,-314.221	1/1:74:0,74,0:0:0:74,0:2656,0:-239.286,-22.2762,0,-239.286,-22.2762,-239.286	1/2:83:0,40,43:0:0:40,43:1424,1537:-241.685,-125.626,-113.585,-116.416,0,-103.471	1/2:197:0,88,109:0:0:88,109:3147,3874:-572.569,-315.961,-289.47,-256.965,0,-224.153	1/2:155:0,80,74:0:0:80,74:2868,2621:-447.453,-213.534,-189.451,-234.023,0,-211.747	1/2:81:0,28,53:0:0:28,53:1000,1883:-235.253,-153.723,-145.294,-81.8865,0,-65.9319	1/2:89:0,43,46:0:0:43,46:1533,1624:-257.543,-132.581,-119.637,-125.317,0,-111.469	1/1:93:0,85,7:0:0:85,7:3039,248:-273.385,-25.5876,0,-253.183,-5.38947,-251.075	1/2:68:0,37,31:0:0:37,31:1328,1097:-197.888,-89.5597,-78.4216,-108.684,0,-99.3522	1/2:275:0,120,155:0:0:120,155:4277,5470:-794.244,-445.614,-409.49,-348.985,0,-302.325	1/2:138:0,70,67:0:0:70,67:2512,2363:-397.281,-192.377,-171.305,-204.9,0,-184.731	1/1:49:0,49,0:0:0:49,0:1760,0:-158.684,-14.7505,0,-158.684,-14.7505,-158.684	1/2:220:0,117,97:0:0:117,97:4168,3437:-619.393,-279.663,-244.443,-339.745,0,-310.545	1/2:219:0,103,116:0:0:103,116:3694,4065:-632.292,-330.991,-299.985,-301.656,0,-266.736	1/1:147:1,146,0:1:36:146,0:5219,0:-466.25,-40.6531,0,-466.551,-43.9504,-469.489	1/2:13:0,6,7:0:0:6,7:216,252:-38.5463,-20.9217,-19.1156,-17.9843,0,-15.8771	1/2:11:0,5,6:0:0:5,6:180,214:-32.4902,-17.8016,-16.2964,-15.0469,0,-13.2407	1/1:21:0,21,0:0:0:21,0:743,0:-67.1933,-6.32163,0,-67.1933,-6.32163,-67.1933	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/2:39:0,15,24:0:0:15,24:540,853:-113.893,-69.8294,-65.314,-44.4211,0,-37.1964	1/1:244:0,241,1:0:0:241,1:8574,36:-771.337,-72.5482,0,-768.4,-69.5925,-768.099	1/1:97:0,97,0:0:0:97,0:3472,0:-312.692,-29.1999,0,-312.692,-29.1999,-312.692	1/1:117:1,116,0:1:36:116,0:4130,0:-368.262,-31.6222,0,-368.563,-34.9195,-371.5	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:125:0,56,69:0:0:56,69:2004,2413:-360.001,-196.579,-179.721,-163.776,0,-143.005	1/1:105:0,104,0:0:0:104,0:3718,0:-334.569,-31.3071,0,-334.569,-31.3071,-334.569	1/2:159:0,73,86:0:0:73,86:2620,3053:-462.484,-248.769,-226.794,-214.072,0,-188.183	1/2:114:1,58,54:1:36:58,54:2084,1899:-321.275,-151.561,-137.039,-167.073,0,-153.755	1/1:76:0,76,0:0:0:76,0:2696,0:-242.884,-22.8783,0,-242.884,-22.8783,-242.884	1/2:95:0,46,49:0:0:46,49:1632,1738:-274.856,-141.889,-128.042,-133.321,0,-118.571	1/1:162:0,162,0:0:0:162,0:5794,0:-521.573,-48.7669,0,-521.573,-48.7669,-521.573	1/2:169:1,67,99:1:21:67,99:2376,3508:-477.133,-283.858,-265.277,-192.031,0,-163.816	1/1:95:0,94,1:0:0:94,1:3349,36:-301.266,-28.2968,0,-298.329,-24.9996,-298.028	1/2:175:0,80,95:0:0:80,95:2868,3354:-507.295,-273.376,-249.294,-234.275,0,-205.677	1/1:194:0,193,0:0:0:193,0:6908,0:-621.537,-58.0988,0,-621.537,-58.0988,-621.537	1/2:26:0,5,21:0:0:5,21:180,754:-76.5525,-61.8652,-60.3601,-15.0469,0,-8.72528	1/2:134:0,62,72:0:0:62,72:2228,2571:-391.692,-209.93,-191.266,-182.12,0,-160.446	1/2:46:0,20,25:0:0:20,25:720,885:-130.876,-72.1239,-66.1033,-58.8247,0,-51.299	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/1:127:0,127,0:0:0:127,0:4530,0:-407.867,-38.2308,0,-407.867,-3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chr04	2364618	.	C	T	42645.5	PASS	AB=0.535382;ABP=53.2577;AC=43;AF=0.228723;AN=188;AO=2486;CIGAR=1X;DP=9982;DPB=9982;DPRA=1.06629;EPP=5401.29;EPPR=16265.2;GTI=1;LEN=1;MEANALT=1.04082;MQM=59.3005;MQMR=59.9863;NS=94;NUMALT=1;ODDS=1.02961;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88725;QR=265752;RO=7493;RPL=2485;RPP=5392.61;RPPR=16092;RPR=1;RUN=1;SAF=2485;SAP=5392.61;SAR=1;SRF=7473;SRP=16100.6;SRR=20;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:19,17:19:657:17:608:-44.1973,0,-48.6134	0/0:159:159,0:159:5667:0:0:0,-47.8638,-510.152	0/0:102:102,0:102:3596:0:0:0,-30.7051,-323.818	0/0:120:120,0:120:4279:0:0:0,-36.1236,-385.289	0/0:56:56,0:56:1990:0:0:0,-16.8577,-179.373	0/0:60:60,0:60:2114:0:0:0,-18.0618,-190.528	0/1:166:80,86:80:2812:86:3070:-226.37,0,-203.349	0/0:204:204,0:204:7202:0:0:0,-61.4101,-648.242	0/1:84:44,40:44:1561:40:1427:-103.358,0,-115.493	0/0:84:83,1:83:2940:1:36:0,-21.6882,-261.235	0/0:147:147,0:147:5179:0:0:0,-44.2514,-466.251	0/0:105:105,0:105:3744:0:0:0,-31.6081,-337.159	0/1:104:43,61:43:1535:61:2174:-164.618,0,-107.135	0/0:126:126,0:126:4436:0:0:0,-37.9298,-399.411	0/1:79:31,48:31:1116:48:1701:-129.574,0,-76.9703	0/1:139:71,68:71:2519:68:2416:-175.716,0,-185.116	0/0:98:98,0:98:3470:0:0:0,-29.5009,-312.511	0/0:73:73,0:73:2585:0:0:0,-21.9752,-232.899	0/1:81:40,41:40:1418:41:1457:-106.988,0,-103.532	0/1:197:89,108:89:3176:108:3868:-288.929,0,-226.762	0/1:156:83,73:83:2917:73:2602:-187.381,0,-215.806	0/1:80:29,51:29:1028:51:1813:-139.331,0,-68.7506	0/1:89:45,44:45:1586:44:1580:-115.682,0,-116.237	0/0:98:91,7:91:3264:7:252:0,-6.47198,-270.951	0/1:69:38,31:38:1344:31:1111:-79.3945,0,-100.489	0/1:269:119,150:119:4256:150:5367:-401.916,0,-302.242	0/1:141:74,67:74:2601:67:2379:-171.9,0,-191.891	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/1:214:119,95:119:4223:95:3389:-240.699,0,-315.833	0/1:214:102,112:102:3625:112:4009:-296.378,0,-262.035	0/0:148:148,0:148:5250:0:0:0,-44.5524,-472.639	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:20:20,0:20:704:0:0:0,-6.0206,-63.6845	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:38:14,24:14:496:24:860:-66.2474,0,-33.5351	0/0:242:241,1:241:8477:1:36:0,-69.251,-759.337	0/0:94:94,0:94:3328:0:0:0,-28.2968,-299.738	0/0:111:111,0:111:3937:0:0:0,-33.4143,-354.465	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:122:53,69:53:1873:69:2455:-184.394,0,-132.121	0/0:104:104,0:104:3712:0:0:0,-31.3071,-334.28	0/1:156:72,84:72:2528:84:2999:-223.111,0,-180.808	0/1:111:60,51:60:2111:51:1804:-129.168,0,-156.842	0/0:72:72,0:72:2488:0:0:0,-21.6742,-224.172	0/1:95:45,50:45:1603:50:1792:-132.901,0,-115.962	0/0:158:158,0:158:5638:0:0:0,-47.5627,-507.542	0/1:170:70,100:70:2486:100:3584:-271.222,0,-172.818	0/0:95:94,1:94:3347:1:36:0,-24.9996,-297.85	0/1:173:79,94:79:2825:94:3343:-248.866,0,-202.409	0/0:195:195,0:195:6892:0:0:0,-58.7008,-620.355	0/1:27:6,21:6:216:21:756:-60.2394,0,-11.6627	0/1:132:62,70:62:2224:70:2512:-186.561,0,-160.688	0/1:44:18,26:18:648:26:927:-70.4491,0,-45.4066	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:124:124,0:124:4414:0:0:0,-37.3277,-397.433	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.58	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:9:6,3:6:216:3:99:-6.52731,0,-17.0812	0/0:68:67,0:67:2377:0:0:0,-20.169,-213.935	0/1:144:73,71:73:2599:71:2544:-185.823,0,-190.775	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:160:159,1:159:5662:1:36:0,-44.5665,-506.104	0/1:223:110,113:110:3901:113:4039:-296.12,0,-284.156	0/1:78:42,36:42:1490:36:1292:-93.1034,0,-110.913	0/0:75:75,0:75:2651:0:0:0,-22.5772,-238.835	0/1:162:64,98:64:2283:98:3520:-268.205,0,-156.964	0/1:89:28,61:28:1000:61:2165:-168.079,0,-63.5237	0/0:81:81,0:81:2886:0:0:0,-24.3834,-259.976	0/0:100:100,0:100:3551:0:0:0,-30.103,-319.798	0/0:100:100,0:100:3567:0:0:0,-30.103,-321.238	0/1:34:18,16:18:635:16:572:-41.5607,0,-47.2419	0/0:83:83,0:83:2941:0:0:0,-24.9855,-264.924	0/1:63:21,42:21:720:42:1504:-116.685,0,-46.1509	0/0:176:176,0:176:6247:0:0:0,-52.9813,-562.138	0/0:124:124,0:124:4432:0:0:0,-37.3277,-399.052	0/1:119:44,74:44:1567:74:2624:-200.562,0,-105.576	0/1:122:52,70:52:1864:70:2512:-188.6,0,-131.314	0/1:35:15,20:15:540:20:696:-52.4054,0,-38.4005	0/0:63:61,1:61:2171:1:36:0,-15.4254,-192.058	0/0:106:106,0:106:3769:0:0:0,-31.9092,-339.396	0/0:223:223,0:223:7910:0:0:0,-67.1297,-711.932	0/0:105:105,0:105:3763:0:0:0,-31.6081,-338.868	0/0:73:73,0:73:2592:0:0:0,-21.9752,-233.527	0/0:104:104,0:104:3603:0:0:0,-31.3071,-324.474	0/0:164:164,0:164:5777:0:0:0,-49.3689,-520.047	0/1:72:33,39:33:1164:39:1374:-102.252,0,-83.39	0/0:114:114,0:114:4029:0:0:0,-34.3174,-362.799	0/0:117:117,0:117:4178:0:0:0,-35.2205,-376.202	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453	0/1:167:91,76:91:3252:76:2702:-193.017,0,-242.627	0/1:89:29,60:29:1012:60:2143:-166.189,0,-64.5922	0/0:75:75,0:75:2635:0:0:0,-22.5772,-237.396	0/0:139:139,0:139:4907:0:0:0,-41.8432,-441.781
chr04	2417181	.	CCA	CCG	154897	PASS	AB=0.438285;ABP=129.519;AC=146;AF=0.776596;AN=188;AO=5933;CIGAR=2M1X;DP=8109;DPB=8112;DPRA=0;EPP=2388.52;EPPR=1814.86;GTI=4;LEN=1;MEANALT=1.24468;MQM=59.9904;MQMR=59.9926;NS=94;NUMALT=1;ODDS=0.00696807;PAIRED=0;PAIREDR=0;PAO=3;PQA=100.5;PQR=100.5;PRO=3;QA=211308;QR=73554;RO=2152;RPL=1689;RPP=2392.26;RPPR=1814.86;RPR=4244;RUN=1;SAF=5932;SAP=12877.7;SAR=1;SRF=2152;SRP=4676.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:3,6:3:106:6:210:-16.5324,0,-7.17983	1/1:99:0,99:0:0:99:3510:-316.111,-29.802,0	1/1:139:0,139:0:0:139:4895:-440.705,-41.8432,0	1/1:169:2,166:2:72:166:5928:-526.772,-44.1363,0	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:47:0,47:0:0:47:1657:-149.415,-14.1484,0	0/1:137:70,67:70:2456:67:2384:-173.576,0,-180.055	1/1:112:0,112:0:0:112:4005:-360.634,-33.7154,0	0/1:75:34,40:34:1189:40:1436:-106.902,0,-84.6769	1/1:115:0,115:0:0:115:4087:-368.018,-34.6185,0	1/1:70:0,70:0:0:70:2490:-224.352,-21.0721,0	1/1:84:0,84:0:0:84:3000:-270.229,-25.2865,0	0/1:75:41,34:41:1400:34:1190:-84.8237,0,-103.714	1/1:68:0,68:0:0:68:2392:-215.533,-20.47,0	0/1:63:33,30:33:1174:30:1072:-77.7696,0,-86.9444	0/1:50:31,19:31:1057:19:684:-46.8388,0,-80.3822	1/1:73:0,73:0:0:73:2567:-231.277,-21.9752,0	1/1:66:0,65:0:0:65:2304:-207.259,-19.567,0	0/1:53:26,27:26:867:27:972:-71.8433,0,-62.3801	0/1:159:94,65:94:3203:65:2321:-161.286,0,-240.636	0/1:167:115,52:115:3931:52:1839:-115.518,0,-303.722	0/1:90:68,22:68:2317:22:781:-43.5194,0,-181.696	0/1:60:32,28:32:1068:28:987:-71.0812,0,-78.3567	1/1:35:1,34:1:34:34:1213:-106.077,-7.13714,0	0/1:74:36,38:36:1221:38:1354:-99.884,0,-87.9105	0/1:287:155,132:155:5229:132:4695:-336.318,0,-384.375	0/1:229:120,109:120:4143:109:3871:-279.649,0,-304.126	1/1:43:0,43:0:0:43:1524:-137.45,-12.9443,0	0/1:235:145,90:145:4950:90:3221:-219.369,0,-374.921	0/1:85:45,39:45:1533:39:1396:-100.293,0,-112.61	1/1:143:0,141:0:0:141:5045:-453.875,-42.4452,0	0/1:17:10,7:10:347:7:252:-17.9114,0,-26.4465	0/1:12:4,8:4:134:8:275:-21.4711,0,-8.77819	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:14:11,3:11:386:3:108:-5.86075,0,-30.8611	1/1:259:0,258:0:0:258:9203:-827.881,-77.6657,0	1/1:78:0,77:0:0:77:2751:-247.472,-23.1793,0	1/1:65:0,64:0:0:64:2285:-205.59,-19.2659,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:122:73,48:73:2524:48:1715:-117.85,0,-190.629	1/1:52:0,52:0:0:52:1858:-167.499,-15.6536,0	0/1:78:42,36:42:1406:36:1266:-90.7614,0,-103.348	0/1:111:55,56:55:1846:56:1991:-146.048,0,-133	1/1:87:0,87:0:0:87:3084:-277.786,-26.1896,0	0/1:115:41,72:41:1418:72:2554:-195.793,0,-93.5955	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:129:75,54:75:2528:54:1920:-134.241,0,-188.941	1/1:115:0,115:0:0:115:4110:-370.084,-34.6185,0	0/1:146:92,52:92:3163:52:1859:-123.881,0,-241.192	1/1:84:0,84:0:0:84:2988:-269.152,-25.2865,0	0/1:9:8,1:8:268:1:36:-0.889005,0,-21.7369	0/1:77:40,37:40:1393:37:1328:-96.6429,0,-102.485	0/1:50:25,25:25:864:25:896:-65.9089,0,-63.023	1/1:19:0,19:0:0:19:668:-60.4457,-5.71957,0	1/1:86:1,84:1:34:84:3004:-267.227,-22.4936,0	1/1:46:0,45:0:0:45:1606:-144.469,-13.5464,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:6,5:6:214:5:180:-13.2407,0,-16.2964	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	0/1:102:53,49:53:1827:49:1744:-126.539,0,-134.002	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:142:0,142:0:0:142:5082:-457.523,-42.7463,0	0/1:154:83,71:83:2853:71:2533:-181.862,0,-210.651	0/1:46:31,15:31:1045:15:540:-35.0892,0,-80.5023	1/1:75:0,74:0:0:74:2644:-237.847,-22.2762,0	0/1:212:106,105:106:3583:105:3746:-273.472,0,-258.817	0/1:76:61,15:61:2102:15:532:-25.3348,0,-166.57	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:52:2,50:2:72:50:1782:-153.826,-8.81684,0	1/1:95:0,95:0:0:95:3402:-306.394,-28.5979,0	0/1:12:7,5:7:238:5:180:-12.9397,0,-18.1397	1/1:83:1,82:1:36:82:2917:-259.166,-21.3872,0	0/1:68:34,34:34:1164:34:1211:-88.8255,0,-84.5903	1/1:149:2,147:2:72:147:5184:-459.867,-38.0167,0	1/1:95:1,94:1:33:94:3342:-297.699,-25.2987,0	0/1:111:50,60:50:1677:60:2142:-159.574,0,-117.736	0/1:65:38,27:38:1304:27:950:-66.2465,0,-98.0881	0/1:15:10,5:10:352:5:180:-11.9403,0,-27.3938	1/1:86:1,85:1:36:85:3022:-268.612,-22.2903,0	1/1:114:1,111:1:36:111:3968:-353.693,-30.4869,0	1/1:213:1,212:1:36:212:7566:-677.383,-60.5211,0	1/1:106:0,105:0:0:105:3758:-338.217,-31.6082,0	1/1:80:0,80:0:0:80:2850:-256.737,-24.0824,0	1/1:99:0,99:0:0:99:3533:-318.12,-29.802,0	1/1:169:0,167:0:0:167:5920:-532.625,-50.272,0	0/1:53:25,28:25:863:28:1004:-74.7213,0,-62.0291	1/1:67:0,67:0:0:67:2374:-213.916,-20.169,0	1/1:81:0,81:0:0:81:2893:-260.606,-24.3834,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:84:52,32:52:1778:32:1152:-78.7036,0,-135.012	0/1:87:59,28:59:1972:28:1002:-64.3062,0,-151.56	1/1:71:0,71:0:0:71:2502:-225.427,-21.3731,0	1/1:133:0,133:0:0:133:4771:-429.545,-40.037,0
chr04	2417270	.	C	T	27314.8	PASS	AB=0.546309;ABP=58.5184;AC=45;AF=0.239362;AN=188;AO=1633;CIGAR=1X;DP=6235;DPB=6235;DPRA=1.17872;EPP=3549.02;EPPR=9987.44;GTI=2;LEN=1;MEANALT=1.0625;MQM=44.662;MQMR=59.9002;NS=94;NUMALT=1;ODDS=1.27211;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58483;QR=164560;RO=4598;RPL=0;RPP=3549.02;RPPR=9987.44;RPR=1633;RUN=1;SAF=1633;SAP=3549.02;SAR=0;SRF=4598;SRP=9987.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:18,15:18:648:15:536:-38.1227,0,-48.7179	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:78:78,0:78:2780:0:0:0,-23.4803,-250.442	0/0:162:162,0:162:5792:0:0:0,-48.7669,-521.393	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:90:38,51:38:1360:51:1816:-134.201,0,-95.5488	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:87:41,46:41:1452:46:1652:-120.743,0,-104.775	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.779	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:130:130,0:130:4635:0:0:0,-39.1339,-417.314	0/1:109:62,47:62:2220:47:1684:-117.454,0,-167.252	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.443	0/1:99:42,57:42:1500:57:2048:-151.724,0,-105.447	0/1:88:46,42:46:1644:42:1508:-107.237,0,-121.758	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.465	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:29:11,18:11:388:18:644:-48.9429,0,-26.5275	0/1:54:24,30:24:860:30:1076:-79.5821,0,-61.4658	0/1:135:72,63:72:2572:63:2256:-158.691,0,-191.07	0/1:37:9,28:9:324:28:1000:-76.9124,0,-18.3677	0/1:63:22,41:22:777:41:1476:-112.363,0,-51.2855	0/1:39:28,11:28:1004:11:392:-23.4127,0,-78.9357	0/1:24:5,19:5:180:19:676:-53.1586,0,-9.32734	0/1:156:55,101:55:1965:101:3628:-271.507,0,-130.145	0/1:157:79,78:79:2832:78:2792:-200.137,0,-207.857	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:197:101,96:101:3620:96:3440:-243.143,0,-266.698	0/1:109:68,40:68:2417:40:1436:-94.879,0,-184.914	0/0:77:77,0:77:2748:0:0:0,-23.1793,-247.548	0/1:4:1,3:1:36:3:108:-8.73172,0,-2.39415	0/1:14:8,6:8:288:6:216:-15.3024,0,-22.053	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:10:2,8:2:72:8:288:-22.986,0,-3.82642	0/0:225:224,1:224:8011:1:36:0,-64.1956,-717.463	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	1/1:1:0,1:0:0:1:36:-3.54852,-0.30103,0	0/1:72:29,43:29:1032:43:1544:-115.265,0,-71.5193	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:50:17,33:17:612:33:1165:-88.7218,0,-40.3619	0/1:61:25,36:25:892:36:1292:-96.0986,0,-62.2365	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:47:17,30:17:608:30:1072:-80.2102,0,-40.9036	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:91:35,56:35:1252:56:2004:-149.44,0,-85.5913	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.637	0/1:64:39,25:39:1404:25:896:-60.1497,0,-107.393	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:4:1,3:1:36:3:108:-8.73172,0,-2.39415	0/1:36:11,25:11:396:25:900:-69.5951,0,-25.1457	0/1:62:19,43:19:684:43:1540:-117.611,0,-43.2265	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.826	0/0:36:35,1:35:1252:1:36:0,-7.64946,-109.797	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:8:3,5:3:108:5:176:-13.545,0,-7.66599	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:105:60,45:60:2152:45:1612:-111.794,0,-162.337	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:152:152,0:152:5453:0:0:0,-45.7566,-490.83	0/1:106:34,72:34:1220:72:2576:-197.056,0,-78.1972	0/1:57:33,24:33:1184:24:864:-59.6794,0,-89.7096	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4821	0/1:111:42,69:42:1508:69:2472:-184.198,0,-102.6	0/1:103:19,84:19:680:84:2997:-234.091,0,-30.5223	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.897	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.262	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.68	0/1:11:4,7:4:144:7:252:-19.3992,0,-10.0023	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:100:57,43:57:2036:43:1548:-107.712,0,-153.409	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:190:190,0:190:6781:0:0:0,-57.1957,-610.342	0/1:34:15,19:15:540:19:672:-49.5448,0,-38.6838	0/1:100:50,50:50:1792:50:1800:-129.068,0,-131.459	0/1:14:3,11:3:104:11:396:-31.3718,0,-5.48102	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.689	0/0:68:67,0:67:2400:0:0:0,-20.169,-215.882	0/0:111:110,1:110:3944:1:36:0,-29.8658,-351.602	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.427	0/0:153:153,0:153:5496:0:0:0,-46.0576,-494.756	0/1:38:20,18:20:716:18:648:-46.5663,0,-53.3286	0/0:86:84,1:84:3012:1:36:0,-22.3491,-267.713	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:70:70,0:70:2488:0:0:0,-21.0721,-224.084	0/1:94:58,36:58:2076:36:1292:-86.2792,0,-158.814	0/1:78:27,51:27:968:51:1805:-136.304,0,-63.9566	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.949	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.865
chr04	2417316	.	AATTCAA	AACTCAA,AACTCGA	133386	PASS	AB=0.445253,0.548793;ABP=81.7098,65.5218;AC=143,45;AF=0.760638,0.239362;AN=188;AO=4582,1663;CIGAR=2M1X4M,2M1X2M1X1M;DP=6295;DPB=6295;DPRA=67.6774,1.03788;EPP=9917.98,3605.49;EPPR=7.35324;GTI=2;LEN=1,7;MEANALT=1.91398,2.38298;MQM=59.9096,44.6669;MQMR=60;NS=94;NUMALT=2;ODDS=1.73333;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=163667,58574;QR=72;RO=2;RPL=4582,1663;RPP=9952.7,3614.17;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=4578,1662;SAP=9917.98,3605.49;SAR=4,1;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,18,17:0:0:18,17:648,596:-101.255,-48.3754,-42.9569,-53.2333,0,-48.1158	1/1:40:0,40,0:0:0:40,0:1427,0:-128.727,-12.0412,0,-128.727,-12.0412,-128.727	1/1:78:0,77,0:0:0:77,0:2756,0:-247.922,-23.1793,0,-247.922,-23.1793,-247.922	1/1:160:0,159,0:0:0:159,0:5700,0:-512.755,-47.8638,0,-512.755,-47.8638,-512.755	1/1:29:0,28,1:0:0:28,1:1008,36:-90.6765,-8.42884,0,-87.7391,-5.1316,-87.4381	1/1:12:0,12,0:0:0:12,0:424,0:-38.4931,-3.61236,0,-38.4931,-3.61236,-38.4931	1/2:91:0,38,53:0:0:38,53:1360,1854:-259.823,-148.914,-137.475,-111.261,0,-95.3065	1/1:59:0,59,0:0:0:59,0:2116,0:-190.709,-17.7608,0,-190.709,-17.7608,-190.709	1/2:88:0,41,46:0:0:41,46:1472,1633:-251.452,-131.4,-119.058,-120.153,0,-106.306	1/1:65:0,65,0:0:0:65,0:2313,0:-208.428,-19.567,0,-208.428,-19.567,-208.428	1/1:46:0,46,0:0:0:46,0:1639,0:-147.798,-13.8474,0,-147.798,-13.8474,-147.798	1/1:130:0,128,0:0:0:128,0:4573,0:-411.375,-38.5318,0,-411.375,-38.5318,-411.375	1/2:108:0,60,48:0:0:60,48:2152,1694:-311.954,-136.421,-118.359,-175.885,0,-161.436	1/1:71:0,71,0:0:0:71,0:2540,0:-228.845,-21.3731,0,-228.845,-21.3731,-228.845	1/2:100:0,43,57:0:0:43,57:1536,2013:-286.815,-161.625,-148.68,-125.543,0,-108.385	1/2:88:0,46,42:0:0:46,42:1652,1464:-252.308,-117.538,-103.691,-135.121,0,-122.478	1/1:39:0,39,0:0:0:39,0:1391,0:-125.488,-11.7402,0,-125.488,-11.7402,-125.488	1/1:44:0,44,0:0:0:44,0:1576,0:-142.132,-13.2453,0,-142.132,-13.2453,-142.132	1/2:30:0,12,18:0:0:12,18:428,644:-87.1473,-52.2578,-48.6454,-35.2449,0,-29.8264	1/2:55:0,24,31:0:0:24,31:846,1096:-157.152,-88.2705,-81.0457,-69.2327,0,-59.9007	1/2:137:0,70,65:0:0:70,65:2507,2275:-386.575,-182.126,-161.054,-204.512,0,-184.945	1/2:35:0,8,27:0:0:8,27:288,953:-99.8537,-76.3513,-73.9431,-23.8592,0,-15.7314	1/2:65:0,22,43:0:0:22,43:788,1518:-186.483,-122.216,-115.593,-64.6221,0,-51.6778	1/2:41:0,30,11:0:0:30,11:1057,394:-118.073,-32.0178,-22.9869,-86.4081,0,-83.0967	1/2:27:0,6,21:0:0:6,21:216,741:-77.4746,-59.8475,-58.0413,-17.9843,0,-11.6627	1/2:156:0,54,101:0:0:54,101:1921,3529:-437.965,-281.424,-265.169,-156.669,0,-126.265	1/2:157:0,77,78:0:0:77,78:2739,2734:-442.331,-219.11,-195.931,-223.277,0,-199.797	1/1:38:0,38,0:0:0:38,0:1345,0:-121.348,-11.4391,0,-121.348,-11.4391,-121.348	1/2:198:0,99,98:0:0:99,98:3564,3457:-566.469,-275.662,-245.86,-290.881,0,-261.38	1/2:110:0,69,41:0:0:69,41:2467,1447:-317.397,-116.235,-95.4644,-201.512,0,-189.17	1/1:76:0,75,0:0:0:75,0:2673,0:-240.598,-22.5773,0,-240.598,-22.5773,-240.598	1/2:4:0,1,3:0:0:1,3:36,108:-11.9714,-9.03275,-8.73172,-3.29724,0,-2.39415	1/2:15:0,8,7:0:0:8,7:288,250:-43.9423,-20.4389,-18.0307,-23.8592,0,-21.752	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:9:0,2,7:0:0:2,7:72,250:-26.3764,-20.5001,-19.898,-6.23466,0,-4.12745	1/1:227:0,226,0:0:0:226,0:8036,0:-722.882,-68.0328,0,-722.882,-68.0328,-722.882	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/1:47:0,44,0:0:0:44,0:1576,0:-141.803,-13.2453,0,-141.803,-13.2453,-141.803	2/2:1:0,0,1:0:0:0,1:0,36:-3.54852,-3.54852,-3.54852,-0.30103,-0.30103,0	1/2:74:0,29,44:0:0:29,44:1044,1574:-211.471,-126.283,-117.553,-85.1889,0,-71.9436	1/1:34:0,32,0:0:0:32,0:1120,0:-100.779,-9.63296,0,-100.779,-9.63296,-100.779	1/2:53:0,18,34:0:0:18,34:648,1207:-149.756,-96.8777,-91.4592,-52.9776,0,-42.7426	1/2:64:0,24,39:0:0:24,39:860,1363:-179.32,-109.176,-101.952,-70.202,0,-58.4618	1/1:81:0,81,0:0:0:81,0:2871,0:-258.626,-24.3834,0,-258.626,-24.3834,-258.626	1/2:47:0,17,30:0:0:17,30:612,1060:-134.77,-84.8289,-79.7114,-50.2959,0,-41.265	1/1:36:0,36,0:0:0:36,0:1277,0:-115.231,-10.8371,0,-115.231,-10.8371,-115.231	1/2:92:0,35,57:0:0:35,57:1260,1999:-262.842,-160.027,-149.491,-103.169,0,-86.0103	1/1:53:0,53,0:0:0:53,0:1884,0:-169.834,-15.9546,0,-169.834,-15.9546,-169.834	1/2:63:0,37,25:0:0:37,25:1319,880:-177.913,-70.3904,-59.2523,-107.513,0,-99.9876	1/1:45:0,45,0:0:0:45,0:1603,0:-144.559,-13.5464,0,-144.559,-13.5464,-144.559	1/2:4:0,1,3:0:0:1,3:36,108:-11.9714,-9.03275,-8.73172,-3.29724,0,-2.39415	1/2:36:0,11,25:0:0:11,25:396,874:-102.971,-70.6554,-67.3441,-32.6714,0,-25.1457	1/2:64:0,20,43:0:0:20,43:716,1502:-178.417,-120.024,-114.003,-58.434,0,-45.4897	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/1:42:0,37,1:0:0:37,1:1324,36:-119.105,-11.1381,0,-116.185,-8.21558,-115.884	1/1:36:0,35,0:0:0:35,0:1256,0:-113.034,-10.536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chr04	2417354	.	T	G	109555	PASS	AB=0.447534;ABP=82.9886;AC=142;AF=0.755319;AN=188;AO=5212;CIGAR=1X;DP=7068;DPB=7068;DPRA=37.9892;EPP=10933.2;EPPR=3996.42;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9877;MQMR=59.9849;NS=94;NUMALT=1;ODDS=0.0790494;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183463;QR=66491;RO=1855;RPL=0;RPP=11320.7;RPPR=4031.09;RPR=5212;RUN=1;SAF=45;SAP=10933.2;SAR=5167;SRF=4;SRP=3996.42;SRR=1851;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	1/1:64:1,63:1:36:63:2224:-196.824,-15.6676,0	1/1:128:0,128:0:0:128:4518:-406.788,-38.5318,0	1/1:206:1,205:1:36:205:7242:-648.238,-58.4139,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:99:53,46:53:1900:46:1641:-118.176,0,-141.476	1/1:63:1,62:1:36:62:2172:-192.144,-15.3666,0	0/1:71:44,27:44:1580:27:964:-65.7037,0,-121.118	1/1:70:0,70:0:0:70:2459:-221.563,-21.0721,0	1/1:58:0,58:0:0:58:2007:-180.899,-17.4597,0	1/1:89:0,89:0:0:89:3135:-282.377,-26.7917,0	0/1:84:50,34:50:1800:34:1203:-83.2885,0,-136.996	1/1:118:0,118:0:0:118:4118:-370.81,-35.5215,0	0/1:84:44,40:44:1572:40:1432:-103.891,0,-116.485	0/1:59:36,23:36:1292:23:786:-53.2934,0,-98.823	1/1:59:0,59:0:0:59:2071:-186.66,-17.7608,0	1/1:51:0,51:0:0:51:1790:-161.381,-15.3525,0	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	0/1:112:71,40:71:2552:40:1406:-93.0617,0,-196.156	0/1:123:78,45:78:2804:45:1598:-107.082,0,-215.572	0/1:19:17,2:17:608:2:72:-1.11715,0,-49.3325	0/1:79:63,16:63:2264:16:576:-28.3936,0,-180.241	0/1:42:6,36:6:216:36:1245:-99.7037,0,-7.14725	0/1:40:29,11:29:1044:11:396:-23.9415,0,-82.2336	0/1:227:134,93:134:4808:93:3269:-226.098,0,-364.541	0/1:157:80,77:80:2872:77:2760:-201.38,0,-211.455	1/1:21:0,21:0:0:21:740:-66.9234,-6.32163,0	0/1:197:109,88:109:3912:88:3081:-218.214,0,-292.969	0/1:176:109,67:109:3886:67:2377:-161.205,0,-296.951	1/1:112:0,112:0:0:112:3996:-359.828,-33.7154,0	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:10:0,10:0:0:10:332:-30.2001,-3.0103,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:173:0,173:0:0:173:6096:-548.746,-52.0782,0	1/1:51:0,51:0:0:51:1780:-160.434,-15.3525,0	1/1:63:0,63:0:0:63:2233:-201.233,-18.9649,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:122:68,54:68:2424:54:1910:-135.45,0,-181.691	1/1:32:0,32:0:0:32:1122:-101.286,-9.63296,0	0/1:46:20,26:20:716:26:932:-70.3515,0,-50.9203	0/1:56:28,28:28:1008:28:1008:-74.1787,0,-74.1787	1/1:45:0,45:0:0:45:1531:-138.075,-13.5464,0	0/1:48:41,7:41:1472:7:225:-6.11532,0,-118.327	1/1:28:0,28:0:0:28:983:-88.7825,-8.42884,0	0/1:69:41,28:41:1472:28:983:-68.0115,0,-112.005	1/1:60:0,60:0:0:60:2082:-187.648,-18.0618,0	0/1:161:60,101:60:2144:101:3579:-273.851,0,-144.762	1/1:75:0,75:0:0:75:2662:-239.826,-22.5773,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:50:17,33:17:612:33:1172:-90.1079,0,-40.3619	0/1:77:42,35:42:1508:35:1244:-89.0848,0,-112.835	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:118:0,118:0:0:118:4115:-370.54,-35.5215,0	0/1:13:2,11:2:72:11:392:-31.7067,0,-2.92333	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:72:0,72:0:0:72:2558:-230.47,-21.6742,0	0/1:117:65,52:65:2315:52:1847:-131.289,0,-173.389	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:225:0,225:0:0:225:7842:-705.821,-67.7318,0	0/1:131:73,58:73:2620:58:2050:-145.335,0,-196.612	0/1:67:24,43:24:860:43:1519:-116.833,0,-57.5528	1/1:35:0,35:0:0:35:1195:-107.846,-10.5361,0	0/1:115:72,43:72:2569:43:1540:-104.275,0,-196.84	0/1:102:60,42:60:2152:42:1471:-101.976,0,-163.242	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	1/1:49:0,49:0:0:49:1729:-155.893,-14.7505,0	1/1:54:0,54:0:0:54:1897:-171.006,-16.2556,0	0/1:29:17,12:17:612:12:432:-30.4913,0,-46.6836	1/1:91:0,91:0:0:91:3207:-288.854,-27.3937,0	0/1:79:42,37:42:1493:37:1302:-93.6984,0,-110.611	1/1:150:0,150:0:0:150:5265:-473.989,-45.1545,0	1/1:158:0,158:0:0:158:5551:-499.716,-47.5627,0	0/1:34:20,14:20:716:14:496:-34.7392,0,-54.5327	0/1:113:48,65:48:1724:65:2307:-173.874,0,-121.429	0/1:19:3,16:3:108:16:555:-44.5565,0,-4.3556	1/1:94:1,93:1:36:93:3286:-292.361,-24.6985,0	1/1:71:0,71:0:0:71:2504:-225.612,-21.3731,0	1/1:96:0,96:0:0:96:3383:-304.685,-28.8989,0	1/1:89:0,89:0:0:89:3151:-283.817,-26.7917,0	1/1:105:0,105:0:0:105:3715:-334.554,-31.6082,0	1/1:55:0,55:0:0:55:1900:-171.273,-16.5567,0	1/1:127:0,127:0:0:127:4455:-401.125,-38.2308,0	0/1:24:13,11:13:468:11:388:-28.0326,0,-35.2349	1/1:68:0,68:0:0:68:2386:-214.998,-20.47,0	1/1:83:1,82:1:36:82:2876:-255.48,-21.3872,0	1/1:57:1,56:1:36:56:1965:-173.525,-13.5604,0	0/1:134:64,70:64:2292:70:2438:-179.336,0,-166.203	0/1:79:56,23:56:2008:23:792:-47.8142,0,-157.212	1/1:158:0,158:0:0:158:5540:-498.727,-47.5627,0	1/1:93:0,93:0:0:93:3270:-294.519,-27.9958,0
chr04	2505035	.	G	A	101272	PASS	AB=0.477724;ABP=16.2644;AC=146;AF=0.776596;AN=188;AO=4690;CIGAR=1X;DP=6305;DPB=6305;DPRA=0;EPP=9647.36;EPPR=3434.28;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9599;MQMR=59.9702;NS=94;NUMALT=1;ODDS=0.125882;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167421;QR=57509;RO=1612;RPL=4627;RPP=9647.36;RPPR=3442.89;RPR=63;RUN=1;SAF=0;SAP=10187.2;SAR=4690;SRF=1;SRP=3494.74;SRR=1611;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:18,14:18:636:14:504:-36.0651,0,-47.9351	1/1:83:0,83:0:0:83:2950:-265.73,-24.9855,0	1/1:90:0,90:0:0:90:3206:-288.755,-27.0927,0	1/1:133:0,133:0:0:133:4738:-426.579,-40.037,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	0/1:74:32,42:32:1148:42:1503:-113.288,0,-81.3536	1/1:146:2,144:2:72:144:5125:-454.552,-37.1137,0	0/1:88:32,56:32:1148:56:2004:-154.141,0,-77.1392	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:59:0,59:0:0:59:2100:-189.269,-17.7608,0	1/1:70:0,70:0:0:70:2505:-225.702,-21.0721,0	0/1:62:29,33:29:1031:33:1184:-88.2045,0,-74.4388	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:63:30,33:30:1076:33:1178:-87.3624,0,-78.188	0/1:53:26,27:26:924:27:956:-70.4011,0,-67.5231	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	1/1:34:1,33:1:36:33:1180:-102.91,-6.63675,0	0/1:34:14,20:14:504:20:716:-54.5327,0,-35.4631	0/1:152:92,60:92:3287:60:2148:-147.831,0,-250.293	0/1:89:50,39:50:1770:39:1392:-98.7873,0,-132.79	0/1:91:76,15:76:2692:15:536:-21.1811,0,-215.133	0/1:73:39,34:39:1396:34:1207:-86.9601,0,-103.964	1/1:75:3,72:3:108:72:2568:-221.295,-12.5021,0	0/1:84:29,55:29:1031:55:1929:-148.594,0,-67.8161	0/1:159:84,75:84:2995:75:2673:-192.951,0,-221.918	0/1:162:94,68:94:3349:68:2436:-170.728,0,-252.859	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:136:54,82:54:1915:82:2940:-223.894,0,-131.687	0/1:88:40,47:40:1432:47:1669:-123.946,0,-102.628	1/1:52:0,52:0:0:52:1852:-166.96,-15.6536,0	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:27:14,13:14:500:13:457:-33.3348,0,-37.2084	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	1/1:110:0,110:0:0:110:3931:-353.981,-33.1133,0	1/1:80:0,80:0:0:80:2867:-258.266,-24.0824,0	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:74:46,28:46:1643:28:1000:-68.0392,0,-125.882	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:124:57,67:57:2048:67:2404:-179.289,0,-147.228	0/1:43:25,18:25:896:18:631:-44.1714,0,-68.0161	1/1:48:0,48:0:0:48:1704:-153.538,-14.4494,0	0/1:61:32,29:32:1140:29:1036:-75.1911,0,-84.5464	1/1:88:0,88:0:0:88:3154:-284.085,-26.4906,0	0/1:73:30,43:30:1063:43:1537:-116.64,0,-74.0056	1/1:83:0,83:0:0:83:2937:-264.562,-24.9855,0	0/1:88:52,36:52:1868:36:1280:-89.0122,0,-141.909	1/1:94:0,94:0:0:94:3360:-302.617,-28.2968,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:103:66,36:66:2368:36:1296:-85.8757,0,-182.313	0/1:37:14,23:14:504:23:824:-63.3452,0,-34.56	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:65:0,65:0:0:65:2324:-209.403,-19.567,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:79:0,79:0:0:79:2813:-253.41,-23.7814,0	0/1:74:33,41:33:1184:41:1466:-109.959,0,-84.5921	1/1:4:0,4:0:0:4:144:-13.3132,-1.20412,0	1/1:80:0,80:0:0:80:2850:-256.69,-24.0824,0	0/1:97:44,53:44:1576:53:1891:-141.268,0,-112.932	0/1:71:30,41:30:1080:41:1468:-111.043,0,-76.1401	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:111:60,51:60:2139:51:1836:-132.102,0,-159.345	0/1:141:91,50:91:3260:50:1791:-119.027,0,-251.089	1/1:48:0,48:0:0:48:1715:-154.636,-14.4494,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:40:0,40:0:0:40:1399:-126.117,-12.0412,0	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	1/1:63:0,62:0:0:62:2223:-199.974,-18.6639,0	0/1:75:46,29:46:1639:29:1031:-70.5254,0,-125.221	1/1:126:0,126:0:0:126:4499:-405.079,-37.9298,0	1/1:75:0,75:0:0:75:2657:-239.376,-22.5773,0	0/1:108:52,56:52:1864:56:1991:-146.952,0,-135.528	0/1:91:41,50:41:1450:50:1792:-134.169,0,-103.401	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	1/1:90:0,90:0:0:90:3194:-287.682,-27.0927,0	1/1:123:0,123:0:0:123:4392:-395.434,-37.0267,0	1/1:63:0,63:0:0:63:2243:-202.133,-18.9649,0	1/1:65:1,64:1:36:64:2279:-201.773,-15.9687,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:97:0,97:0:0:97:3471:-312.601,-29.1999,0	0/1:29:13,16:13:459:16:572:-43.0836,0,-32.9109	1/1:55:0,55:0:0:55:1958:-176.389,-16.5567,0	1/1:73:1,72:1:36:72:2588:-229.57,-18.3769,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	0/1:86:48,38:48:1698:38:1355:-96.3611,0,-127.216	0/1:58:42,16:42:1476:16:576:-34.7152,0,-115.675	1/1:105:0,105:0:0:105:3748:-337.521,-31.6082,0	1/1:61:0,61:0:0:61:2187:-197.095,-18.3628,0
chr04	2526978	.	G	A	7149.52	PASS	AB=0.492811;ABP=13.5947;AC=93;AF=0.494681;AN=188;AO=11720;CIGAR=1X;DP=23839;DPB=23839;DPRA=0;EPP=25435.3;EPPR=26310.4;GTI=96;LEN=1;MEANALT=1.04255;MQM=11.3183;MQMR=10.5106;NS=94;NUMALT=1;ODDS=43.8166;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=418372;QR=431077;RO=12115;RPL=1;RPP=25444;RPPR=26310.4;RPR=11719;RUN=1;SAF=1;SAP=25444;SAR=11719;SRF=0;SRP=26310.4;SRR=12115;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:113:53,60:53:1879:60:2148:-30.2866,0,-20.6431	0/1:339:172,167:172:6124:167:5983:-70.2562,0,-66.9786	0/1:411:206,205:206:7341:205:7329:-84.9019,0,-79.3891	0/1:568:279,289:279:9939:289:10303:-115.885,0,-80.5106	0/1:206:122,83:122:4376:83:2984:-25.0576,0,-58.3945	0/1:138:77,61:77:2741:61:2184:-19.2424,0,-34.5802	0/1:332:183,149:183:6510:149:5347:-46.5994,0,-67.7869	0/1:461:235,226:235:8352:226:8093:-93.4274,0,-92.3603	0/0:183:133,50:133:4732:50:1779:0,-5.36917,-83.3879	0/1:306:146,160:146:5208:160:5708:-67.855,0,-39.5749	0/1:215:108,107:108:3832:107:3782:-40.4193,0,-32.6438	0/1:149:78,71:78:2796:71:2531:-27.7055,0,-31.9333	0/1:145:74,71:74:2635:71:2532:-29.4511,0,-28.9926	0/1:207:99,108:99:3506:108:3849:-46.9985,0,-37.1065	0/1:129:71,58:71:2511:58:2084:-18.5394,0,-25.4458	0/1:129:73,56:73:2586:56:1998:-16.6377,0,-32.9887	0/1:175:91,84:91:3204:84:2988:-31.5551,0,-36.7331	0/1:127:50,77:50:1780:77:2755:-38.3695,0,-11.2232	0/1:115:64,51:64:2267:51:1782:-15.7565,0,-28.0404	0/1:562:323,238:323:11495:238:8528:-68.6158,0,-123.083	0/1:267:162,105:162:5740:105:3749:-25.6875,0,-79.4858	0/1:225:138,87:138:4914:87:3105:-19.1979,0,-57.4039	0/1:108:59,49:59:2124:49:1752:-15.778,0,-21.0861	0/1:362:154,208:154:5458:208:7426:-101.766,0,-42.2383	0/1:224:111,113:111:3963:113:4027:-46.6474,0,-41.5274	0/1:897:385,512:385:13694:512:18313:-246.828,0,-77.1113	0/1:493:260,233:260:9245:233:8336:-82.2336,0,-108.055	0/1:87:41,46:41:1460:46:1652:-19.2264,0,-14.0072	0/1:675:347,328:347:12423:328:11726:-128.443,0,-109.141	0/1:480:232,248:232:8273:248:8839:-103.276,0,-82.6062	0/1:344:215,129:215:7664:129:4622:-25.1646,0,-90.6137	0/1:23:9,14:9:324:14:504:-7.03028,0,-1.9951	0/1:38:25,13:25:887:13:464:-1.61469,0,-13.3828	0/1:13:8,5:8:284:5:180:-1.1408,0,-4.10566	0/1:31:16,15:16:572:15:540:-5.88194,0,-6.50767	0/1:44:27,17:27:957:17:612:-3.58491,0,-13.5305	0/1:413:161,252:161:5723:252:9025:-130.974,0,-20.5706	0/1:603:347,256:347:12359:256:9167:-74.5888,0,-160.166	0/1:189:104,85:104:3720:85:3022:-27.781,0,-45.5975	0/0:9:8,1:8:279:1:36:0,-1.61053,-6.8249	0/1:363:178,185:178:6313:185:6597:-75.9633,0,-65.6961	0/1:113:56,57:56:1979:57:2040:-22.4536,0,-21.0921	0/1:452:248,204:248:8815:204:7279:-67.9162,0,-108.093	0/1:159:82,77:82:2924:77:2748:-30.6312,0,-26.1342	0/1:141:60,81:60:2117:81:2881:-37.1887,0,-11.7457	0/1:232:105,127:105:3738:127:4535:-58.0659,0,-24.8278	0/1:387:170,217:170:6026:217:7701:-101.976,0,-50.3607	0/1:408:202,206:202:7201:206:7327:-82.2889,0,-59.5504	0/1:247:125,122:125:4434:122:4328:-48.4694,0,-38.4958	0/1:401:220,181:220:7862:181:6438:-57.8432,0,-77.7957	0/1:436:185,251:185:6586:251:8996:-128.292,0,-35.4019	0/1:41:17,24:17:594:24:864:-13.58,0,-3.12077	0/1:421:213,208:213:7613:208:7444:-85.2451,0,-84.8653	0/1:174:99,75:99:3512:75:2684:-22.876,0,-37.1405	0/1:40:19,21:19:684:21:756:-8.9249,0,-6.76682	0/1:402:218,184:218:7741:184:6599:-61.3011,0,-93.5191	0/1:88:40,48:40:1431:48:1712:-20.9879,0,-9.65786	0/1:55:20,35:20:711:35:1240:-21.5021,0,-1.69825	1/1:70:20,50:20:705:50:1800:-34.5592,-2.83561,0	0/1:189:109,80:109:3878:80:2850:-26.6307,0,-50.5009	0/1:307:162,145:162:5765:145:5174:-50.3323,0,-53.5786	0/1:35:15,20:15:523:20:720:-9.3511,0,-3.13049	0/1:484:247,237:247:8781:237:8497:-92.9537,0,-76.4786	0/1:589:338,251:338:12022:251:8960:-69.9539,0,-130.514	0/1:238:114,124:114:4048:124:4390:-53.3088,0,-40.5123	0/1:244:126,118:126:4487:118:4171:-43.0667,0,-40.0734	0/1:270:117,153:117:4191:153:5449:-69.423,0,-24.3678	0/1:384:205,179:205:7291:179:6392:-61.1709,0,-69.6752	0/1:108:45,63:45:1571:63:2225:-32.122,0,-11.9521	0/1:174:91,83:91:3247:83:2972:-29.979,0,-37.1617	0/1:193:108,85:108:3867:85:3010:-28.9802,0,-39.0957	0/1:75:34,41:34:1207:41:1468:-18.0726,0,-8.26396	0/1:357:179,177:179:6334:177:6336:-71.5942,0,-68.9267	0/1:160:68,92:68:2426:92:3253:-45.9787,0,-18.9907	0/1:267:145,122:145:5183:122:4318:-40.3654,0,-61.8433	0/1:497:237,260:237:8418:260:9295:-110.38,0,-66.6273	0/1:331:199,132:199:7081:132:4678:-36.2387,0,-95.9925	0/1:328:162,166:162:5755:166:5943:-73.2452,0,-60.887	0/1:45:19,26:19:671:26:932:-14.6215,0,-5.2521	0/1:303:137,165:137:4897:165:5889:-78.7741,0,-43.6335	0/1:263:133,130:133:4711:130:4629:-56.8916,0,-51.9486	0/1:542:269,273:269:9573:273:9783:-106.174,0,-80.1246	0/1:239:108,131:108:3852:131:4692:-56.6171,0,-25.8745	0/1:143:73,70:73:2590:70:2507:-25.8241,0,-23.2085	0/1:160:76,84:76:2712:84:3008:-34.7332,0,-20.6195	0/1:285:139,146:139:4968:146:5232:-58.3208,0,-39.4513	0/1:90:47,43:47:1668:43:1519:-15.6118,0,-19.3938	0/1:176:64,112:64:2279:112:3978:-60.7961,0,-9.86218	0/1:156:79,77:79:2812:77:2737:-29.5379,0,-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chr04	2526998	.	A	C	4.5993e-09	PASS	AB=0.509924;ABP=23.0081;AC=95;AF=0.505319;AN=188;AO=12079;CIGAR=1X;DP=23636;DPB=23636;DPRA=0;EPP=25980.9;EPPR=24554.3;GTI=99;LEN=1;MEANALT=1.08511;MQM=10.5165;MQMR=11.3671;NS=94;NUMALT=1;ODDS=20.8904;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=432219;QR=412525;RO=11549;RPL=12050;RPP=25980.9;RPPR=24562.9;RPR=29;RUN=1;SAF=0;SAP=26232.2;SAR=12079;SRF=1;SRP=25072.7;SRR=11548;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:114:61,53:61:2173:53:1891:-20.3472,0,-32.3401	0/1:341:168,173:168:5984:173:6187:-67.4997,0,-72.0381	0/1:408:199,209:199:7124:209:7450:-83.2015,0,-79.9034	0/1:555:283,272:283:9987:272:9749:-78.3536,0,-115.978	0/1:206:83,123:83:2976:123:4416:-59.981,0,-24.853	0/1:136:59,77:59:2112:77:2753:-35.0975,0,-18.1356	0/1:327:144,183:144:5134:183:6542:-69.2032,0,-43.2755	0/1:460:220,240:220:7877:240:8548:-97.7103,0,-85.4362	1/1:182:50,132:50:1792:132:4736:-80.859,-3.66015,0	0/1:307:156,151:156:5568:151:5416:-43.803,0,-63.7068	0/1:211:104,107:104:3720:107:3823:-32.9551,0,-38.7057	0/1:149:71,78:71:2536:78:2785:-31.902,0,-28.4283	0/1:145:70,75:70:2495:75:2688:-29.9914,0,-29.8187	0/1:206:109,97:109:3896:97:3468:-35.8101,0,-48.3028	0/1:128:58,70:58:2067:70:2508:-24.6821,0,-20.3166	0/1:127:55,72:55:1948:72:2575:-32.6166,0,-16.222	0/1:174:82,92:82:2915:92:3272:-38.9865,0,-31.8079	0/1:126:76,50:76:2711:50:1777:-11.4876,0,-38.9854	0/1:116:51,65:51:1819:65:2328:-28.6523,0,-15.5213	0/1:558:236,321:236:8429:321:11489:-123.548,0,-69.0292	0/1:264:105,159:105:3756:159:5696:-79.7454,0,-26.531	0/1:225:86,139:86:3088:139:4979:-59.3172,0,-18.2255	0/1:107:49,58:49:1748:58:2084:-20.3065,0,-16.257	0/1:355:204,151:204:7300:151:5379:-41.2595,0,-101.09	0/1:218:109,109:109:3879:109:3890:-41.4233,0,-44.4692	0/1:892:505,386:505:17974:386:13810:-79.6692,0,-245.543	0/1:487:230,257:230:8211:257:9189:-106.933,0,-83.0449	0/1:87:46,41:46:1652:41:1463:-14.0042,0,-19.2264	0/1:667:318,349:318:11384:349:12512:-113.336,0,-118.482	0/1:471:244,227:244:8685:227:8089:-80.7958,0,-103.512	0/1:337:124,213:124:4416:213:7595:-90.7951,0,-20.512	0/1:22:13,9:13:464:9:324:-2.29613,0,-6.34072	0/1:37:13,24:13:460:24:849:-12.5881,0,-1.91399	0/1:11:4,7:4:144:7:252:-3.72059,0,-0.753999	0/1:29:13,16:13:468:16:561:-7.07794,0,-4.41613	0/1:44:17,27:17:612:27:964:-13.5604,0,-3.58491	0/1:409:249,160:249:8924:160:5731:-20.8247,0,-130.589	0/1:594:251,343:251:8978:343:12277:-158.895,0,-72.7065	0/1:189:84,105:84:2983:105:3772:-46.5034,0,-26.7635	1/1:8:1,7:1:36:7:248:-5.93144,-1.3095,0	0/1:354:178,176:178:6361:176:6288:-66.3973,0,-71.9371	0/1:112:56,56:56:2004:56:2012:-21.4095,0,-21.7657	0/1:448:206,242:206:7311:242:8672:-104.346,0,-71.3616	0/1:160:77,83:77:2749:83:2975:-26.7342,0,-30.3037	0/1:143:82,61:82:2920:61:2172:-13.1107,0,-38.9339	0/1:226:120,106:120:4271:106:3799:-28.5215,0,-53.0643	0/1:376:206,170:206:7397:170:6077:-53.7273,0,-94.1901	0/1:403:205,198:205:7296:198:7099:-57.5153,0,-84.3052	0/1:241:119,122:119:4260:122:4372:-37.5064,0,-45.4947	0/1:401:178,223:178:6368:223:7999:-80.5054,0,-55.7521	0/1:442:254,187:254:9111:187:6673:-35.6195,0,-129.653	0/1:41:23,18:23:824:18:640:-4.02941,0,-10.3294	0/1:417:204,213:204:7289:213:7633:-86.0837,0,-82.3735	0/1:172:75,97:75:2684:97:3484:-35.6239,0,-23.5673	0/1:38:21,17:21:752:17:612:-5.39109,0,-9.52524	0/1:404:181,223:181:6473:223:7984:-97.8852,0,-57.7915	0/1:87:47,40:47:1684:40:1436:-9.96365,0,-20.3035	0/1:53:34,19:34:1220:19:684:-1.31881,0,-22.4688	0/0:68:49,19:49:1756:19:676:0,-3.10904,-34.3526	0/1:189:81,108:81:2895:108:3868:-49.6433,0,-27.7171	0/1:302:140,162:140:5011:162:5795:-55.8998,0,-47.1742	0/1:35:20,15:20:720:15:536:-3.1393,0,-9.3511	0/1:480:235,245:235:8389:245:8777:-76.0334,0,-93.4829	0/1:592:253,339:253:9046:339:12155:-131.424,0,-71.1943	0/1:234:121,113:121:4332:113:4052:-40.9544,0,-51.6524	0/1:245:116,129:116:4090:129:4617:-42.7454,0,-40.7634	0/1:266:150,116:150:5347:116:4168:-24.77,0,-67.7053	0/1:375:172,203:172:6148:203:7273:-70.6895,0,-57.1992	0/1:108:62,46:62:2228:46:1652:-12.9947,0,-33.4136	0/1:172:80,91:80:2872:91:3260:-37.9645,0,-27.8985	0/1:192:82,110:82:2931:110:3956:-41.2037,0,-26.1753	0/1:76:40,36:40:1409:36:1284:-9.85553,0,-16.7459	0/1:350:169,180:169:6043:180:6420:-71.9229,0,-68.5112	0/1:161:93,68:93:3301:68:2432:-18.7001,0,-48.4068	0/1:267:124,143:124:4440:143:5116:-59.9622,0,-45.992	0/1:490:255,235:255:9130:235:8404:-64.4731,0,-107.685	0/1:324:129,195:129:4593:195:6977:-94.2984,0,-35.3912	0/1:329:163,166:163:5855:166:5956:-65.5622,0,-69.7148	0/1:45:27,18:27:964:18:624:-4.23866,0,-15.6979	0/1:305:166,139:166:5952:139:4972:-44.7266,0,-79.0105	0/1:263:130,132:130:4656:132:4723:-51.2845,0,-57.9804	0/1:547:272,275:272:9727:275:9822:-84.0752,0,-103.726	0/1:234:130,104:130:4617:104:3735:-23.7001,0,-57.0586	0/1:142:71,71:71:2548:71:2543:-21.4532,0,-27.2998	0/1:160:85,74:85:3032:74:2660:-18.8493,0,-37.3451	0/1:285:146,139:146:5227:139:4972:-39.6323,0,-61.1066	0/1:90:46,44:46:1648:44:1571:-16.2495,0,-21.5677	0/1:176:112,64:112:4020:64:2300:-9.87475,0,-62.2424	0/1:151:73,78:73:2620:78:2800:-31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chr04	2527004	.	T	C	0	PASS	AB=0.507924;ABP=15.9839;AC=95;AF=0.505319;AN=188;AO=12245;CIGAR=1X;DP=24054;DPB=24054;DPRA=0;EPP=26566.6;EPPR=25375.1;GTI=98;LEN=1;MEANALT=1.12766;MQM=10.5153;MQMR=11.37;NS=94;NUMALT=1;ODDS=43.3099;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=436747;QR=413864;RO=11796;RPL=12242;RPP=26566.6;RPPR=25375.1;RPR=3;RUN=1;SAF=0;SAP=26592.7;SAR=12245;SRF=0;SRP=25617.7;SRR=11796;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:113:60,53:60:2141:53:1870:-19.2793,0,-31.6457	0/1:344:168,176:168:5815:176:6262:-69.4017,0,-71.2902	0/1:415:205,209:205:7187:209:7467:-81.2495,0,-83.3856	0/1:572:293,279:293:10298:279:10001:-79.5371,0,-118.077	0/1:207:82,125:82:2888:125:4456:-61.5947,0,-22.1163	0/1:138:61,77:61:2151:77:2749:-34.5009,0,-19.3257	0/1:335:149,186:149:5253:186:6616:-68.1143,0,-45.7124	0/1:472:230,242:230:7999:242:8637:-95.8898,0,-93.606	1/1:187:53,134:53:1814:134:4771:-80.6263,-2.95437,0	0/1:314:162,151:162:5662:151:5409:-41.8736,0,-67.3539	0/1:215:106,109:106:3717:109:3908:-33.5566,0,-39.3039	0/1:149:71,78:71:2541:78:2789:-31.9932,0,-28.4933	0/1:149:73,76:73:2541:76:2724:-29.7762,0,-32.3161	0/1:208:111,97:111:3932:97:3484:-35.2149,0,-49.5471	0/1:131:61,70:61:2177:70:2516:-23.7816,0,-22.3579	0/1:129:55,74:55:1946:74:2640:-33.9665,0,-15.5961	0/1:181:87,94:87:3019:94:3380:-38.9231,0,-34.4013	0/1:126:77,49:77:2685:49:1741:-10.5076,0,-39.8984	0/1:116:51,65:51:1802:65:2336:-28.6557,0,-15.4641	0/1:563:240,322:240:8463:322:11482:-122.781,0,-72.1949	0/1:267:105,162:105:3731:162:5759:-81.7006,0,-25.5362	0/1:226:86,140:86:3058:140:5004:-57.9968,0,-17.669	0/1:111:51,60:51:1775:60:2152:-20.8993,0,-16.9306	0/1:362:209,153:209:7386:153:5476:-41.1362,0,-103.886	0/1:223:111,112:111:3931:112:3998:-42.7662,0,-44.8873	0/1:918:523,395:523:18206:395:14128:-79.8822,0,-252.96	0/1:499:237,261:237:8323:261:9256:-107.198,0,-86.4963	0/1:88:47,41:47:1654:41:1461:-13.6793,0,-19.8458	0/1:679:326,353:326:11397:353:12636:-113.311,0,-121.166	0/1:480:247,233:247:8597:233:8261:-83.5415,0,-102.64	0/1:348:133,215:133:4662:215:7615:-89.173,0,-27.6884	0/1:22:13,9:13:468:9:309:-2.2697,0,-6.34244	0/1:39:13,26:13:464:26:932:-13.9883,0,-1.31317	0/1:13:5,8:5:180:8:288:-4.10739,0,-1.1408	0/1:31:15,16:15:510:16:561:-6.47588,0,-5.80597	0/1:44:17,27:17:582:27:957:-13.5305,0,-3.5179	0/1:418:255,163:255:9096:163:5848:-20.9086,0,-133.807	0/1:609:254,353:254:8938:353:12554:-164.456,0,-71.2049	0/1:189:84,105:84:3001:105:3772:-46.5932,0,-26.6919	1/1:9:1,8:1:36:8:288:-6.83105,-1.61053,0	0/1:368:187,181:187:6486:181:6417:-66.9713,0,-76.0908	0/1:113:56,57:56:1971:57:2048:-22.0973,0,-21.3698	0/1:458:208,250:208:7235:250:8908:-108.937,0,-69.84	0/1:160:76,84:76:2675:84:2990:-27.5871,0,-29.2447	0/1:145:81,64:81:2897:64:2276:-15.2046,0,-37.381	0/1:236:128,108:128:4501:108:3814:-27.3169,0,-58.4205	0/1:384:215,169:215:7551:169:6008:-50.2637,0,-99.1925	0/1:407:206,201:206:7201:201:7164:-58.9056,0,-83.8949	0/1:250:124,126:124:4297:126:4528:-38.4878,0,-49.6881	0/1:404:179,225:179:6265:225:8070:-81.3614,0,-55.5083	0/1:447:258,188:258:9013:188:6718:-34.9881,0,-132.363	0/1:41:23,18:23:809:18:635:-4.01562,0,-10.2964	0/1:422:206,216:206:7276:216:7706:-87.4555,0,-82.694	0/1:175:78,97:78:2688:97:3488:-34.7226,0,-25.4436	0/1:40:21,19:21:748:19:680:-6.76509,0,-8.92098	0/1:409:185,224:185:6505:224:7962:-97.2899,0,-59.9788	0/1:88:48,40:48:1697:40:1431:-9.65786,0,-20.9545	0/1:54:34,20:34:1190:20:694:-1.96786,0,-22.0921	0/0:69:49,20:49:1722:20:701:0,-2.5363,-33.1406	0/1:187:79,108:79:2746:108:3833:-50.0828,0,-25.1919	0/1:306:143,163:143:5117:163:5782:-55.6049,0,-48.7337	0/1:35:20,15:20:690:15:527:-3.12454,0,-9.28416	0/1:485:237,247:237:8284:247:8791:-76.459,0,-93.6881	0/1:594:254,340:254:8832:340:12182:-131.589,0,-70.8916	0/1:245:127,117:127:4361:117:4189:-41.6741,0,-54.1363	0/1:251:121,129:121:4314:129:4628:-41.0854,0,-44.1561	0/1:273:154,119:154:5329:119:4250:-25.3092,0,-68.9521	0/1:388:180,208:180:6249:208:7422:-71.15,0,-60.7579	0/1:111:64,47:64:2221:47:1654:-13.012,0,-34.3196	0/1:174:81,93:81:2867:93:3336:-39.0609,0,-27.9786	0/1:195:84,111:84:2982:111:3961:-41.1683,0,-27.2829	0/1:78:42,35:42:1482:35:1233:-8.53212,0,-18.2988	0/1:358:176,182:176:6196:182:6464:-71.0987,0,-72.6349	0/1:162:95,67:95:3329:67:2370:-17.3453,0,-50.0084	0/1:270:129,141:129:4422:141:5011:-57.09,0,-49.0231	0/1:496:256,240:256:9038:240:8544:-69.6089,0,-105.575	0/1:337:134,203:134:4641:203:7239:-97.8628,0,-36.1122	0/1:332:164,168:164:5747:168:5922:-66.3166,0,-69.5744	0/1:47:27,19:27:949:19:680:-4.85296,0,-15.2484	0/1:300:164,136:164:5768:136:4852:-43.2257,0,-77.0486	0/1:270:136,134:136:4783:134:4717:-50.7105,0,-61.8282	0/1:555:277,278:277:9782:278:9929:-84.4002,0,-105.816	0/1:235:129,106:129:4534:106:3812:-25.2016,0,-55.6453	0/1:141:69,72:69:2476:72:2592:-22.7506,0,-25.6231	0/1:161:86,75:86:3013:75:2700:-19.2476,0,-37.7403	0/1:291:150,141:150:5271:141:5049:-39.6049,0,-64.2769	0/1:91:46,45:46:1611:45:1616:-16.9434,0,-21.17	0/1:175:113,62:113:3966:62:2224:-8.19669,0,-63.3147	0/1:153:75,78:75:2636:78:2808:-30.7343,0,-28.3514	0/1:99:48,51:48:1682:51:1802:-20.0419,0,-17.7892	0/1:315:151,164:151:5379:164:5853:-66.755,0,-57.099	0/1:132:59,73:59:2011:73:2609:-26.3316,0,-18.3904	0/1:250:99,150:99:3488:150:5337:-60.3831,0,-22.279	0/1:253:138,115:138:4915:115:4098:-27.8277,0,-61.256
chr04	2549971	.	T	C	109904	PASS	AB=0.537691;ABP=152.133;AC=95;AF=0.505319;AN=188;AO=6500;CIGAR=1X;DP=12087;DPB=12087;DPRA=0;EPP=14117.6;EPPR=12124.2;GTI=1;LEN=1;MEANALT=1.01064;MQM=50.6934;MQMR=42.1969;NS=94;NUMALT=1;ODDS=107.922;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232372;QR=200210;RO=5586;RPL=0;RPP=14117.6;RPPR=12124.2;RPR=6500;RUN=1;SAF=6500;SAP=14117.6;SAR=0;SRF=5586;SRP=12132.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:44,28:44:1584:28:993:-62.4628,0,-116.025	0/1:176:67,109:67:2397:109:3904:-297.375,0,-154.93	0/1:127:49,78:49:1730:78:2784:-211.915,0,-112.394	0/1:309:138,171:138:4929:171:6118:-455.972,0,-340.608	0/1:115:58,57:58:2080:57:2039:-148.51,0,-145.02	0/1:116:56,60:56:2004:60:2140:-157.375,0,-138.442	0/1:45:28,17:28:1008:17:608:-40.1939,0,-75.4107	0/1:217:97,120:97:3480:120:4308:-319.026,0,-237.579	0/1:104:52,52:52:1860:52:1851:-124.805,0,-130.9	0/1:143:60,83:60:2152:83:2975:-224.79,0,-145.391	0/1:72:40,32:40:1440:32:1143:-81.4565,0,-103.974	0/1:98:47,51:47:1688:51:1832:-135.269,0,-117.613	0/1:94:56,38:56:2016:38:1359:-88.2324,0,-146.891	0/1:76:43,33:43:1513:33:1184:-83.8167,0,-108.609	0/1:91:44,47:44:1584:47:1688:-121.708,0,-111.892	0/1:76:39,37:39:1392:37:1328:-93.5353,0,-97.3308	0/1:74:39,35:39:1400:35:1248:-89.9062,0,-99.7362	0/1:81:42,39:42:1512:39:1400:-101.59,0,-106.876	0/1:54:22,32:22:792:32:1148:-79.5347,0,-52.8617	0/1:255:106,149:106:3808:149:5311:-391.871,0,-258.326	0/1:178:89,89:89:3192:89:3155:-219.972,0,-223.014	0/1:202:86,116:86:3096:116:4137:-300.935,0,-214.009	0/1:91:42,49:42:1508:49:1752:-127.143,0,-104.328	0/1:176:82,94:82:2944:94:3364:-247.944,0,-201.854	0/1:131:70,61:70:2505:61:2192:-150.631,0,-176.918	0/1:404:146,258:146:5229:258:9203:-689.433,0,-341.664	0/1:227:93,134:93:3314:134:4773:-349.104,0,-218.529	0/1:45:23,22:23:828:22:788:-57.48,0,-57.9487	0/1:376:169,207:169:6048:207:7448:-541.209,0,-417.223	0/1:182:75,107:75:2688:107:3844:-280.18,0,-174.974	0/1:142:59,83:59:2089:83:2961:-223.632,0,-139.598	0/1:10:2,8:2:72:8:288:-22.8447,0,-3.57813	0/1:34:17,17:17:612:17:598:-41.3817,0,-43.0354	0/1:3:1,2:1:36:2:72:-5.91644,0,-2.61792	0/1:9:7,2:7:252:2:72:-4.10033,0,-19.0589	0/1:12:4,8:4:144:8:273:-20.2906,0,-9.26621	0/1:293:146,147:146:5239:147:5269:-385.773,0,-376.36	0/1:262:117,145:117:4185:145:5189:-387.477,0,-282.106	0/1:92:52,40:52:1868:40:1428:-100.805,0,-134.712	1/1:2:0,2:0:0:2:72:-6.63173,-0.60206,0	0/1:165:77,88:77:2764:88:3139:-224.828,0,-188.01	0/1:50:25,25:25:896:25:896:-65.7924,0,-62.9407	0/1:250:110,140:110:3956:140:4997:-361.087,0,-267.384	0/1:71:36,35:36:1292:35:1260:-90.2393,0,-92.7328	0/1:84:46,38:46:1656:38:1359:-97.2537,0,-120.898	0/1:186:98,88:98:3528:88:3143:-220.671,0,-255.617	0/1:215:88,127:88:3115:127:4529:-342.036,0,-205.05	0/1:208:86,122:86:3073:122:4376:-324.497,0,-205.818	0/1:175:79,96:79:2836:96:3426:-255.243,0,-196.067	0/1:140:53,87:53:1904:87:3112:-232.688,0,-125.31	0/1:290:147,142:147:5273:142:5084:-369.732,0,-378.975	0/1:7:3,4:3:108:4:144:-11.0655,0,-7.75161	0/1:183:73,110:73:2616:110:3939:-277.313,0,-172.38	0/1:37:20,17:20:720:17:612:-41.9771,0,-53.0992	0/1:29:13,16:13:468:16:572:-42.9573,0,-32.4713	0/1:188:95,93:95:3412:93:3306:-240.519,0,-237.841	0/1:40:19,21:19:680:21:741:-54.8047,0,-48.1393	0/1:11:8,3:8:288:3:108:-6.75657,0,-22.5928	0/1:27:11,16:11:396:16:576:-42.3856,0,-27.3526	0/1:64:28,36:28:989:36:1292:-96.898,0,-65.5032	0/1:177:96,81:96:3452:81:2908:-202.715,0,-249.612	0/1:13:2,11:2:72:11:396:-31.6648,0,-2.77653	0/1:263:123,140:123:4405:140:4989:-369.045,0,-308.769	0/1:270:103,167:103:3681:167:5982:-446.48,0,-241.282	0/1:66:32,34:32:1148:34:1224:-86.7712,0,-79.7929	0/1:124:57,67:57:2033:67:2412:-179.835,0,-141.655	0/1:198:88,110:88:3119:110:3909:-284.201,0,-214.467	0/1:175:64,111:64:2296:111:3983:-295.322,0,-148.373	0/1:20:16,4:16:576:4:144:-7.27414,0,-44.2342	0/1:87:28,59:28:1004:59:2101:-162.666,0,-61.2446	0/1:109:57,52:57:2052:52:1859:-134.649,0,-149.292	0/1:19:7,12:7:252:12:428:-32.083,0,-16.7541	0/1:118:62,56:62:2232:56:1988:-143.071,0,-156.928	0/1:66:35,31:35:1248:31:1105:-75.8207,0,-89.0029	0/1:175:84,91:84:3024:91:3264:-240.746,0,-208.877	0/1:263:121,142:121:4348:142:5088:-378.463,0,-303.433	0/1:257:116,141:116:4164:141:5031:-353.656,0,-284.211	0/1:134:48,86:48:1728:86:3088:-220.265,0,-109.784	0/1:19:17,2:17:612:2:72:-1.09003,0,-47.6861	0/1:184:89,95:89:3200:95:3393:-249.052,0,-220.894	0/1:77:39,38:39:1400:38:1360:-99.2285,0,-98.4419	0/1:353:165,188:165:5909:188:6703:-496.529,0,-411.242	0/1:172:87,85:87:3132:85:3043:-221.961,0,-223.005	0/1:65:38,27:38:1364:27:952:-66.2555,0,-100.954	0/1:90:42,48:42:1512:48:1720:-127.891,0,-106.285	0/1:193:101,92:101:3617:92:3308:-239.385,0,-259.854	0/1:44:24,20:24:864:20:720:-47.9927,0,-61.9566	0/1:109:66,43:66:2357:43:1532:-104.637,0,-171.083	0/1:61:33,28:33:1188:28:1000:-71.7145,0,-84.9753	0/1:44:21,23:21:752:23:824:-61.0772,0,-52.0819	0/1:106:52,54:52:1868:54:1918:-134.968,0,-129.68	0/1:95:41,54:41:1472:54:1923:-138.888,0,-101.397	0/1:147:60,87:60:2141:87:3071:-232.096,0,-144.264	0/1:108:50,58:50:1800:58:2084:-155.127,0,-126.32
chr04	2550015	.	C	G	15907.6	PASS	AB=0.293474;ABP=2001.37;AC=42;AF=0.223404;AN=188;AO=1599;CIGAR=1X;DP=11851;DPB=11851;DPRA=1.25684;EPP=3475.19;EPPR=22230.2;GTI=9;LEN=1;MEANALT=1.16667;MQM=38.8843;MQMR=48.0089;NS=94;NUMALT=1;ODDS=1.80667;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56652;QR=357811;RO=10236;RPL=1599;RPP=3475.19;RPPR=22230.2;RPR=0;RUN=1;SAF=1599;SAP=3475.19;SAR=0;SRF=10236;SRP=22230.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:56,17:56:1918:17:586:-26.4885,0,-146.197	0/0:173:172,1:172:6042:1:36:0,-48.832,-533.469	0/0:127:127,0:127:4484:0:0:0,-38.2308,-397.676	0/0:300:297,3:297:10439:3:108:0,-80.6364,-920.307	0/0:111:111,0:111:3860:0:0:0,-33.4143,-340.671	0/0:113:113,0:113:3946:0:0:0,-34.0164,-349.388	0/1:43:34,9:34:1204:9:324:-15.3825,0,-93.8565	0/0:218:217,1:217:7573:1:32:0,-62.4252,-665.449	0/1:102:69,33:69:2427:33:1180:-65.2967,0,-182.575	0/0:143:143,0:143:5024:0:0:0,-43.0473,-447.929	0/0:70:70,0:70:2412:0:0:0,-21.0721,-214.601	0/0:95:95,0:95:3292:0:0:0,-28.5978,-292.079	0/1:92:74,18:74:2540:18:640:-24.7037,0,-195.24	0/0:75:75,0:75:2633:0:0:0,-22.5772,-232.39	0/1:87:64,23:64:2228:23:824:-45.4496,0,-171.67	0/1:76:59,17:59:2039:17:608:-28.9525,0,-156.814	0/0:71:71,0:71:2489:0:0:0,-21.3731,-220.084	0/0:77:77,0:77:2731:0:0:0,-23.1793,-241.671	0/1:53:32,21:32:1121:21:739:-44.1938,0,-82.7982	0/1:248:192,56:192:6686:56:1983:-97.0184,0,-520.344	0/1:169:122,47:122:4288:47:1669:-90.2408,0,-325.399	0/1:198:117,81:117:4068:81:2858:-188.069,0,-303.41	0/1:88:61,27:61:2134:27:955:-56.2893,0,-162.39	0/0:169:161,8:161:5594:8:288:0,-26.2737,-470.169	0/1:127:87,39:87:3056:39:1388:-80.0858,0,-229.423	0/1:393:274,118:274:9622:118:4204:-244.941,0,-740.789	0/1:228:159,69:159:5572:69:2431:-139.119,0,-422.349	0/0:44:43,0:43:1465:0:0:0,-12.9443,-129.838	0/1:365:262,103:262:9150:103:3625:-203.704,0,-699.903	0/1:175:124,50:124:4365:50:1796:-98.7736,0,-328.975	0/0:139:137,0:137:4766:0:0:0,-41.2411,-423.995	0/1:10:8,2:8:284:2:72:-3.42614,0,-22.7002	0/1:33:24,9:24:846:9:318:-16.3897,0,-64.5646	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.98617	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.2234	0/1:12:9,3:9:309:3:104:-5.26922,0,-24.0669	0/0:292:292,0:292:10247:0:0:0,-87.9008,-915.432	0/0:259:259,0:259:9091:0:0:0,-77.9668,-803.61	0/0:91:91,0:91:3159:0:0:0,-27.3937,-279.256	0/1:2:1,1:1:32:1:36:-2.78554,0,-2.59521	0/1:159:121,38:121:4211:38:1330:-65.4237,0,-322.754	0/0:47:47,0:47:1612:0:0:0,-14.1484,-143.036	0/1:248:186,62:186:6459:62:2224:-113.217,0,-494.385	0/1:73:58,15:58:1992:15:540:-25.0016,0,-155.557	0/0:83:83,0:83:2883:0:0:0,-24.9855,-257.024	0/1:185:135,49:135:4717:49:1717:-93.5423,0,-364.392	0/0:211:210,1:210:7344:1:36:0,-60.1297,-647.1	0/1:197:152,45:152:5344:45:1599:-79.9165,0,-416.303	0/0:170:170,0:170:5967:0:0:0,-51.1751,-531.807	0/1:139:101,38:101:3571:38:1353:-74.9878,0,-275.791	0/0:287:287,0:287:10082:0:0:0,-86.3956,-899.555	0/1:6:5,1:5:176:1:36:-1.64831,0,-14.2298	0/1:180:113,67:113:3944:67:2375:-139.816,0,-292.5	0/1:36:27,9:27:941:9:324:-16.5049,0,-73.3606	0/0:29:29,0:29:1032:0:0:0,-8.72987,-91.8705	0/0:184:183,0:183:6375:0:0:0,-55.0885,-561.633	0/0:40:40,0:40:1423:0:0:0,-12.0412,-126.917	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.6138	0/1:25:14,11:14:496:11:392:-26.7017,0,-36.9658	0/0:66:66,0:66:2319:0:0:0,-19.868,-204.331	0/1:177:131,46:131:4583:46:1635:-88.4426,0,-352.096	0/0:14:11,0:11:392:0:0:0,-3.31133,-35.1671	0/0:259:255,2:255:8961:2:72:0,-71.6874,-794.179	0/1:265:191,72:191:6677:72:2538:-140.377,0,-513.699	0/1:66:47,19:47:1631:19:680:-38.0128,0,-124.122	0/0:124:124,0:124:4346:0:0:0,-37.3277,-387.773	0/1:197:128,69:128:4510:69:2413:-150.257,0,-340.251	0/1:171:90,81:90:3149:81:2862:-196.079,0,-228.162	0/0:20:20,0:20:701:0:0:0,-6.0206,-61.5531	0/0:85:85,0:85:2861:0:0:0,-25.5875,-255.083	0/0:108:108,0:108:3770:0:0:0,-32.5112,-337.043	0/1:18:11,7:11:392:7:248:-16.22,0,-29.6838	0/0:114:114,0:114:3998:0:0:0,-34.3174,-354.527	0/1:60:49,11:49:1751:11:392:-14.0861,0,-136.228	0/0:168:168,0:168:5826:0:0:0,-50.573,-515.43	0/0:261:261,0:261:9183:0:0:0,-78.5688,-818.192	0/1:246:181,65:181:6328:65:2323:-115.002,0,-483.328	0/1:134:81,53:81:2813:53:1880:-112.332,0,-208.413	0/0:18:18,0:18:648:0:0:0,-5.41854,-56.7255	0/0:179:179,0:179:6204:0:0:0,-53.8844,-548.012	0/0:74:73,0:73:2565:0:0:0,-21.9752,-227.068	0/0:349:349,0:349:12134:0:0:0,-105.059,-1078.94	0/0:170:170,0:170:5979:0:0:0,-51.1751,-530.572	0/0:61:61,0:61:2130:0:0:0,-18.3628,-189.72	0/0:89:89,0:89:3091:0:0:0,-26.7917,-275.877	0/0:187:187,0:187:6508:0:0:0,-56.2926,-579.192	0/1:43:30,13:30:1067:13:464:-25.478,0,-80.8664	0/0:111:111,0:111:3799:0:0:0,-33.4143,-334.868	0/0:61:61,0:61:2149:0:0:0,-18.3628,-189.869	0/0:45:45,0:45:1570:0:0:0,-13.5463,-138.756	0/1:103:71,32:71:2480:32:1117:-64.4175,0,-186.691	0/1:92:55,37:55:1907:37:1298:-84.2049,0,-141.932	0/0:145:145,0:145:5098:0:0:0,-43.6493,-454.479	0/0:108:108,0:108:3758:0:0:0,-32.5112,-335.494
chr04	2550018	.	A	G	80885.9	PASS	AB=0.466353;ABP=115.821;AC=93;AF=0.494681;AN=188;AO=5350;CIGAR=1X;DP=11473;DPB=11473;DPRA=123.355;EPP=11620.4;EPPR=13292.4;GTI=1;LEN=1;MEANALT=1.03226;MQM=42.1645;MQMR=50.7172;NS=94;NUMALT=1;ODDS=110.112;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187944;QR=215967;RO=6120;RPL=5350;RPP=11620.4;RPPR=13292.4;RPR=0;RUN=1;SAF=5350;SAP=11620.4;SAR=0;SRF=6120;SRP=13292.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:25,41:25:892:41:1441:-105.668,0,-55.7824	0/1:163:101,62:101:3579:62:2174:-140.087,0,-272.149	0/1:118:72,46:72:2529:46:1636:-106.318,0,-191.761	0/1:290:157,133:157:5543:133:4628:-320.907,0,-410.877	0/1:111:54,57:54:1895:57:1971:-137.936,0,-136.972	0/1:110:58,52:58:2036:52:1817:-124.921,0,-149.878	0/1:43:16,27:16:568:27:941:-70.2769,0,-37.1971	0/1:206:109,97:109:3855:97:3443:-237.94,0,-282.31	0/1:96:48,48:48:1684:48:1694:-119.075,0,-113.615	0/1:137:81,56:81:2839:56:1989:-133.952,0,-214.386	0/1:66:29,37:29:1024:37:1315:-94.9426,0,-72.5629	0/1:93:48,45:48:1673:45:1581:-110.105,0,-122.526	0/1:90:35,55:35:1241:55:1912:-139.492,0,-78.9219	0/1:74:33,41:33:1167:41:1411:-100.821,0,-82.8964	0/1:88:45,43:45:1616:43:1528:-108.45,0,-116.268	0/1:71:33,38:33:1159:38:1325:-94.0997,0,-80.2383	0/1:71:33,38:33:1168:38:1344:-95.9235,0,-83.8115	0/1:77:38,39:38:1330:39:1383:-97.6062,0,-96.5436	0/1:51:28,23:28:1008:23:820:-56.2017,0,-68.9164	0/1:240:137,102:137:4835:102:3619:-246.61,0,-355.639	0/1:160:78,82:78:2729:82:2906:-203.797,0,-189.196	0/1:197:113,84:113:3989:84:2961:-204.044,0,-290.36	0/1:86:46,40:46:1630:40:1418:-98.3433,0,-117.934	0/1:163:90,73:90:3182:73:2550:-172.496,0,-235.739	0/1:122:59,63:59:2100:63:2190:-153.465,0,-145.309	0/1:380:242,137:242:8558:137:4791:-311.065,0,-640.427	0/1:218:129,89:129:4548:89:3086:-202.753,0,-333.043	0/1:41:18,23:18:623:23:797:-57.146,0,-43.9611	0/1:352:192,160:192:6755:160:5667:-391.064,0,-489.103	0/1:172:100,72:100:3525:72:2541:-166.582,0,-256.829	0/1:137:78,59:78:2756:59:2062:-139.144,0,-206.615	0/1:10:8,2:8:288:2:68:-3.2757,0,-22.8447	0/1:34:17,17:17:596:17:599:-42.0443,0,-41.0105	0/1:3:2,1:2:72:1:36:-2.61792,0,-5.91644	0/1:8:2,6:2:72:6:212:-15.9106,0,-4.40136	0/1:13:9,4:9:316:4:144:-8.96518,0,-23.8717	0/1:282:144,138:144:5039:138:4841:-345.37,0,-368.447	0/1:252:141,111:141:5008:111:3915:-262.834,0,-374.34	0/1:90:38,52:38:1360:52:1816:-131.334,0,-95.2987	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/1:155:83,72:83:2907:72:2548:-173.957,0,-208.737	0/1:47:25,22:25:870:22:780:-54.0094,0,-64.3562	0/1:234:128,106:128:4515:106:3694:-250.799,0,-324.768	0/1:72:35,37:35:1247:37:1302:-93.4795,0,-89.0263	0/1:83:39,44:39:1366:44:1516:-109.277,0,-98.1935	0/1:176:81,95:81:2880:95:3315:-240.886,0,-200.973	0/1:200:120,80:120:4219:80:2835:-185.572,0,-318.821	0/1:196:112,83:112:3943:83:2928:-198.221,0,-290.714	0/1:166:91,75:91:3221:75:2642:-183.143,0,-239.597	0/1:135:83,52:83:2943:52:1818:-119.898,0,-219.053	0/1:275:137,138:137:4846:138:4814:-344.327,0,-352.922	0/1:7:4,3:4:131:3:108:-7.75161,0,-9.94407	0/1:177:104,73:104:3655:73:2564:-170.131,0,-256.568	0/1:37:17,20:17:608:20:699:-51.3212,0,-41.6171	0/1:27:15,12:15:531:12:432:-30.0254,0,-39.8782	0/1:177:85,92:85:3007:92:3206:-223.976,0,-216.904	0/1:37:18,19:18:648:19:659:-47.3275,0,-47.3542	0/1:11:3,8:3:108:8:284:-22.2554,0,-6.75657	0/1:24:13,11:13:460:11:396:-28.2557,0,-33.3145	0/1:63:33,30:33:1172:30:1041:-70.5593,0,-86.4327	0/1:177:81,96:81:2865:96:3365:-242.362,0,-199.08	0/1:14:12,2:12:428:2:72:-2.4755,0,-34.3118	0/1:252:133,119:133:4714:119:4165:-292.357,0,-347.863	0/1:259:159,100:159:5621:100:3538:-232.76,0,-418.307	0/1:63:34,29:34:1208:29:1032:-70.9481,0,-86.5339	0/1:115:61,54:61:2148:54:1886:-131.874,0,-158.821	0/1:186:103,83:103:3635:83:2943:-203.094,0,-263.515	0/1:167:109,58:109:3813:58:2002:-126.38,0,-283.194	0/1:19:3,16:3:104:16:563:-43.5239,0,-3.9718	0/1:81:54,27:54:1897:27:951:-58.8363,0,-146.231	0/1:103:49,54:49:1743:54:1871:-135.502,0,-126.026	0/1:19:12,7:12:420:7:239:-15.6698,0,-31.3454	0/1:110:55,55:55:1956:55:1947:-137.059,0,-142.745	0/1:62:29,33:29:1028:33:1145:-81.3975,0,-71.0579	0/1:168:85,83:85:3015:83:2898:-200.763,0,-220.519	0/1:249:133,116:133:4668:116:4114:-287.675,0,-344.861	0/1:240:126,114:126:4419:114:4003:-276.282,0,-307.551	0/1:127:81,46:81:2883:46:1618:-103.027,0,-204.602	0/1:19:2,17:2:72:17:596:-46.6119,0,-1.09003	0/1:176:89,87:89:3171:87:3073:-212.912,0,-231.77	0/1:73:37,36:37:1294:36:1245:-87.0204,0,-94.5148	0/1:340:180,160:180:6330:160:5637:-391.681,0,-467.058	0/1:165:81,84:81:2824:84:2944:-209.651,0,-204.514	0/1:63:26,37:26:923:37:1319:-97.5757,0,-64.2503	0/1:82:44,38:44:1522:38:1338:-93.4175,0,-112.514	0/1:184:86,98:86:3063:98:3443:-247.606,0,-220.081	0/1:39:18,21:18:644:21:744:-53.2628,0,-43.1441	0/1:106:41,65:41:1447:65:2247:-162.817,0,-97.9333	0/1:58:27,31:27:956:31:1112:-79.313,0,-68.6815	0/1:40:21,19:21:739:19:680:-46.8783,0,-54.6792	0/1:102:51,51:51:1784:51:1804:-126.121,0,-124.5	0/1:91:50,41:50:1771:41:1446:-100.474,0,-127.752	0/1:138:79,59:79:2791:59:2099:-143.326,0,-209.764	0/1:105:56,49:56:1971:49:1712:-119.729,0,-145.877
chr04	2595949	.	TCCT	CCCT,TCCC	62577.3	PASS	AB=0.53407,0.459945;ABP=46.8077,63.5476;AC=113,75;AF=0.601064,0.398936;AN=188;AO=4263,2570;CIGAR=1X3M,3M1X;DP=6906;DPB=6908.5;DPRA=0,2.06996;EPP=9260,5583.69;EPPR=16.0391;GTI=10;LEN=1,1;MEANALT=2.29787,2.42683;MQM=27.259,25.5008;MQMR=34.1667;NS=94;NUMALT=2;ODDS=1981.8;PAIRED=0,0;PAIREDR=0;PAO=0,4.5;PQA=0,101.5;PQR=0;PRO=0;QA=115432,91477;QR=193;RO=6;RPL=0,29;RPP=9260,5334.65;RPPR=16.0391;RPR=4263,2541;RUN=1,1;SAF=0,29;SAP=9260,5334.65;SAR=4263,2541;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,26,12:0:0:26,12:784,410:-89.2604,-33.6142,-25.7874,-55.9656,0,-52.3532	1/1:58:0,58,0:0:0:58,0:1729,0:-140.429,-17.4597,0,-140.429,-17.4597,-140.429	1/1:78:1,73,2:1:30:73,2:2198,72:-176.079,-19.7575,0,-170.503,-16.0202,-172.109	1/2:135:0,72,63:0:0:72,63:1771,2234:-174.998,-56.165,-34.4908,-119.005,0,-100.04	1/2:72:0,21,51:0:0:21,51:568,1819:-80.6628,-41.5114,-35.1898,-39.3577,0,-24.0052	1/1:32:0,32,0:0:0:32,0:963,0:-78.53,-9.63296,0,-78.53,-9.63296,-78.53	1/2:82:0,39,42:0:0:39,42:929,1500:-140.427,-79.1089,-67.3687,-61.2268,0,-48.5835	1/1:34:0,33,1:0:0:33,1:1007,23:-82.1363,-9.93399,0,-80.4059,-7.97621,-80.1049	1/2:57:0,35,20:0:0:35,20:1060,720:-134.324,-58.802,-48.266,-75.5542,0,-69.5336	1/2:55:0,24,30:0:0:24,30:585,1064:-63.4865,-24.5094,-17.2846,-38.8655,0,-29.8346	1/2:81:0,58,23:0:0:58,23:1391,820:-110.037,-17.9086,-0.448905,-92.2731,0,-85.3494	1/1:40:0,40,0:0:0:40,0:1204,0:-98.4517,-12.0412,0,-98.4517,-12.0412,-98.4517	1/2:55:0,34,21:0:0:34,21:1021,756:-134.616,-61.9801,-51.7451,-72.905,0,-66.5834	1/2:52:0,22,30:0:0:22,30:600,1055:-63.8469,-22.368,-15.7454,-41.6679,0,-32.637	1/2:52:0,21,31:0:0:21,31:504,1101:-87.6159,-54.2575,-47.9359,-33.5752,0,-24.2433	1/2:45:0,32,13:0:0:32,13:875,459:-86.6206,-25.9341,-16.3011,-60.937,0,-57.0236	1/1:18:0,18,0:0:0:18,0:540,0:-44.2318,-5.41854,0,-44.2318,-5.41854,-44.2318	1/1:9:0,9,0:0:0:9,0:274,0:-22.6113,-2.70927,0,-22.6113,-2.70927,-22.6113	1/2:19:0,12,7:0:0:12,7:360,252:-46.3957,-20.9135,-17.3011,-25.8089,0,-23.7017	1/2:100:0,45,55:0:0:45,55:1090,1938:-171.34,-98.9525,-85.4061,-72.6091,0,-56.0525	1/2:128:0,70,57:0:0:70,57:1899,2039:-221.565,-91.3977,-70.3256,-130.171,0,-113.013	2/2:48:0,1,47:0:0:1,47:24,1665:-121.448,-119.861,-119.56,-14.1484,-12.3496,0	1/2:110:0,58,51:0:0:58,51:1426,1821:-185.262,-89.9193,-72.4595,-95.2974,0,-79.9448	1/2:61:0,18,43:0:0:18,43:482,1535:-61.3749,-28.2439,-22.8253,-33.33,0,-20.3857	1/2:51:0,33,17:0:0:33,17:907,608:-80.1268,-17.1141,-7.18007,-62.9756,0,-57.8581	2/2:92:0,12,80:0:0:12,80:317,2824:-168.804,-148.411,-144.798,-24.0824,-3.46523,0	1/2:178:0,95,82:0:0:95,82:2576,2913:-307.034,-129.389,-100.791,-177.668,0,-152.983	1/2:24:1,14,9:1:36:14,9:376,320:-27.8057,-2.1841,-0.933088,-22.7796,0,-23.0158	2/2:74:0,6,68:0:0:6,68:169,2436:-138.456,-126.774,-124.968,-20.47,-8.53972,0	1/2:104:0,66,37:0:0:66,37:1796,1332:-160.705,-36.2019,-16.334,-124.58,0,-113.441	1/2:86:0,43,42:0:0:43,42:1039,1496:-102.961,-33.9697,-21.0254,-68.8254,0,-56.1821	1/2:13:0,7,2:0:0:7,2:187,68:-16.4574,-3.57752,-1.47031,-12.9166,0,-12.3146	1/1:204:0,189,9:0:0:189,9:5167,324:-414.911,-56.8947,0,-404.763,-46.7319,-402.054	1/1:108:0,102,0:0:0:102,0:3073,0:-249.782,-30.7051,0,-249.782,-30.7051,-249.782	1/1:16:0,10,0:0:0:10,0:298,0:-24.2151,-3.0103,0,-24.2151,-3.0103,-24.2151	1/1:242:0,235,5:0:0:235,5:7063,180:-572.486,-70.7421,0,-557.797,-55.9227,-556.292	2/2:141:0,12,129:0:0:12,129:301,4579:-175.489,-155.249,-151.637,-38.8329,-18.4292,0	1/2:120:0,59,61:0:0:59,61:1582,2184:-145.575,-36.8485,-19.0877,-108.897,0,-90.5344	1/1:35:0,35,0:0:0:35,0:1031,0:-83.9174,-10.5361,0,-83.9174,-10.5361,-83.9174	1/1:105:0,104,1:0:0:104,1:2816,36:-225.552,-31.3071,0,-223.24,-28.7054,-222.939	1/2:98:0,37,61:0:0:37,61:1006,2192:-160.808,-91.5587,-80.4205,-69.4751,0,-51.1123	1/2:33:0,19,13:0:0:19,13:511,459:-43.0707,-7.86051,-2.14094,-35.2636,0,-31.3502	1/2:142:0,78,63:0:0:78,63:2117,2231:-271.836,-125.6,-102.119,-146.245,0,-127.28	1/2:35:0,16,19:0:0:16,19:397,680:-61.1589,-34.5333,-29.7169,-26.8511,0,-21.1315	1/2:48:0,12,36:0:0:12,36:286,1274:-48.9322,-30.0252,-26.4129,-19.0946,0,-8.25756	2/2:83:0,2,81:0:0:2,81:56,2904:-168.125,-163.975,-163.373,-24.3834,-19.9708,0	1/1:37:0,34,1:0:0:34,1:1022,36:-82.998,-10.235,0,-80.0663,-7.26286,-79.7652	1/2:87:0,41,46:0:0:41,46:1041,1648:-151.656,-80.6998,-68.3576,-71.1831,0,-57.3357	1/2:74:0,32,42:0:0:32,42:767,1487:-85.1744,-34.3846,-24.7516,-50.9624,0,-38.3192	1/2:58:0,31,27:0:0:31,27:758,963:-99.796,-49.2947,-39.9627,-50.727,0,-42.5992	2/2:73:1,7,65:1:27:7,65:181,2317:-87.0278,-74.7834,-74.7992,-17.4411,-7.06129,0	1/1:156:0,154,1:0:0:154,1:3709,36:-292.56,-46.3586,0,-291.783,-45.571,-291.482	1/2:74:0,38,36:0:0:38,36:1166,1277:-187.77,-104.373,-92.9335,-83.7144,0,-72.8773	1/2:22:0,6,16:0:0:6,16:173,576:-40.9666,-30.0373,-28.2312,-11.1664,0,-6.34991	1/1:80:0,80,0:0:0:80,0:2415,0:-196.384,-24.0824,0,-196.384,-24.0824,-196.384	1/2:74:0,41,33:0:0:41,33:1131,1179:-99.2799,-19.9207,-7.57851,-79.5254,0,-69.5914	1/2:50: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chr04	2595960	.	A	G	5229.37	PASS	AB=0.230661;ABP=1786.84;AC=32;AF=0.170213;AN=188;AO=678;CIGAR=1X;DP=7494;DPB=7494;DPRA=1.36611;EPP=1475.27;EPPR=14740.9;GTI=5;LEN=1;MEANALT=1;MQM=59.5103;MQMR=22.3695;NS=94;NUMALT=1;ODDS=2.97123;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23763;QR=243082;RO=6815;RPL=0;RPP=1475.27;RPPR=14749.5;RPR=678;RUN=1;SAF=0;SAP=1475.27;SAR=678;SRF=1;SRP=14792.9;SRR=6814;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:27,12:27:968:12:428:-27.1186,0,-59.232	0/0:58:58,0:58:2075:0:0:0,-17.4597,-151.069	0/0:75:75,0:75:2692:0:0:0,-22.5772,-197.384	0/0:129:129,0:129:4600:0:0:0,-38.8329,-223.087	0/0:74:73,1:73:2599:1:32:0,-19.855,-106.383	0/0:33:33,0:33:1180:0:0:0,-9.93399,-86.6968	0/1:83:59,24:59:2096:24:832:-50.2085,0,-79.1129	0/0:35:35,0:35:1256:0:0:0,-10.536,-93.9201	0/1:58:37,21:37:1315:21:756:-50.8911,0,-79.232	0/0:53:53,0:53:1892:0:0:0,-15.9546,-86.9942	0/0:86:86,0:86:3045:0:0:0,-25.8886,-159.979	0/0:42:42,0:42:1504:0:0:0,-12.6433,-108.814	0/1:55:34,21:34:1220:21:743:-50.6285,0,-73.0331	0/0:54:54,0:54:1936:0:0:0,-16.2556,-87.4641	0/1:53:39,14:39:1391:14:500:-29.3816,0,-49.1559	0/1:47:38,9:38:1355:9:316:-14.6304,0,-69.0589	0/0:18:18,0:18:644:0:0:0,-5.41854,-46.0599	0/0:11:11,0:11:396:0:0:0,-3.31133,-28.1	0/1:21:13,8:13:468:8:288:-19.9375,0,-27.9008	0/1:96:75,21:75:2675:21:739:-37.9158,0,-101.176	0/1:124:101,23:101:3604:23:812:-36.0719,0,-156.553	0/1:89:64,25:64:2292:25:853:-50.2306,0,-73.2596	0/1:104:83,21:83:2933:21:752:-36.6944,0,-122.737	0/0:65:63,2:63:2233:2:68:0,-13.1102,-78.1108	0/0:50:47,3:47:1684:3:108:0,-4.97633,-83.8325	0/1:181:147,34:147:5242:34:1203:-54.0795,0,-176.259	0/1:173:140,33:140:5012:33:1177:-54.1578,0,-213.097	0/0:24:24,0:24:864:0:0:0,-7.22472,-44.7455	0/1:136:111,25:111:3968:25:892:-39.6034,0,-129.872	0/0:103:97,6:97:3468:6:216:0,-11.2156,-166.082	0/0:89:89,0:89:3188:0:0:0,-26.7917,-147.719	0/0:12:11,1:11:396:1:36:0,-0.0140849,-15.2245	0/0:203:201,2:201:7153:2:72:0,-54.2724,-459.505	0/0:105:105,0:105:3748:0:0:0,-31.6081,-266.948	0/0:17:17,0:17:604:0:0:0,-5.11751,-33.8901	0/0:245:240,5:240:8558:5:176:0,-57.5673,-606.614	0/0:211:211,0:211:7560:0:0:0,-63.5173,-315.73	0/0:118:118,0:118:4220:0:0:0,-35.5215,-194.115	0/0:38:37,1:37:1315:1:36:0,-10.4401,-91.8104	0/0:106:106,0:106:3779:0:0:0,-31.9092,-253.077	0/1:99:77,22:77:2733:22:767:-39.5408,0,-98.0543	0/0:35:35,0:35:1256:0:0:0,-10.536,-61.45	0/1:139:101,38:101:3584:38:1333:-78.4174,0,-163.234	0/1:36:27,9:27:968:9:315:-17.8501,0,-37.4769	0/0:50:50,0:50:1779:0:0:0,-15.0515,-69.711	0/1:108:81,27:81:2900:27:942:-52.5802,0,-87.1151	0/0:34:34,0:34:1205:0:0:0,-10.235,-86.9177	0/1:86:66,20:66:2352:20:698:-37.2347,0,-93.5387	0/0:72:72,0:72:2584:0:0:0,-21.6742,-112.336	0/1:56:43,13:43:1540:13:445:-23.5153,0,-60.8281	0/0:96:96,0:96:3396:0:0:0,-28.8989,-144.645	0/0:155:155,0:155:5506:0:0:0,-46.6596,-329.755	0/1:76:41,35:41:1460:35:1224:-87.5747,0,-85.7869	0/1:52:45,7:45:1608:7:243:-6.55392,0,-59.9517	0/0:80:80,0:80:2848:0:0:0,-24.0824,-207.602	0/0:75:75,0:75:2676:0:0:0,-22.5772,-130.288	0/0:49:49,0:49:1724:0:0:0,-14.7505,-82.5015	0/0:96:96,0:96:3401:0:0:0,-28.8989,-156.962	0/0:100:99,1:99:3512:1:36:0,-26.5047,-162.148	0/0:66:66,0:66:2356:0:0:0,-19.868,-122.77	0/1:108:81,27:81:2896:27:927:-51.2271,0,-103.747	0/0:96:96,0:96:3444:0:0:0,-28.8989,-206.631	0/0:60:60,0:60:2148:0:0:0,-18.0618,-94.2019	0/1:112:89,23:89:3169:23:828:-41.1288,0,-125.279	0/0:20:19,1:19:680:1:36:0,-2.42232,-23.8122	0/0:26:26,0:26:924:0:0:0,-7.82678,-44.8616	0/1:150:123,27:123:4396:27:932:-39.0328,0,-183.584	0/1:101:76,25:76:2712:25:889:-49.8795,0,-111.533	0/0:59:59,0:59:2096:0:0:0,-17.7608,-109.324	0/0:24:24,0:24:852:0:0:0,-7.22472,-62.8287	0/0:50:50,0:50:1779:0:0:0,-15.0515,-78.1056	0/0:175:174,1:174:6161:1:36:0,-49.082,-367.755	0/0:51:51,0:51:1815:0:0:0,-15.3525,-129.987	0/1:28:18,10:18:644:10:345:-22.944,0,-37.971	0/0:126:126,0:126:4500:0:0:0,-37.9298,-230.524	0/0:52:52,0:52:1864:0:0:0,-15.6536,-96.2965	0/1:98:70,28:70:2468:28:966:-57.7381,0,-152.97	0/1:34:27,7:27:972:7:252:-12.7939,0,-60.9126	0/0:175:174,1:174:6224:1:36:0,-49.082,-438.591	0/0:67:67,0:67:2408:0:0:0,-20.169,-111.926	0/0:42:42,0:42:1500:0:0:0,-12.6433,-108.861	0/0:141:141,0:141:5044:0:0:0,-42.4452,-216.653	0/0:57:57,0:57:2036:0:0:0,-17.1587,-90.6014	0/0:53:53,0:53:1892:0:0:0,-15.9546,-83.1371	0/0:23:23,0:23:824:0:0:0,-6.92369,-40.1114	0/0:94:93,0:93:3302:0:0:0,-27.9958,-139.848	0/1:10:7,3:7:248:3:84:-4.82784,0,-15.6071	0/0:32:32,0:32:1148:0:0:0,-9.63296,-79.5185	0/0:35:35,0:35:1239:0:0:0,-10.536,-93.6326	0/0:100:100,0:100:3572:0:0:0,-30.103,-206.079	0/1:221:199,22:199:7106:22:765:-2.6401,0,-369.441	0/1:58:39,19:39:1400:19:629:-39.4574,0,-60.0332	0/0:60:60,0:60:2140:0:0:0,-18.0618,-108.782	0/0:83:83,0:83:2963:0:0:0,-24.9855,-131.576
chr04	2595993	.	C	T	5721.17	PASS	AB=0.450139;ABP=112.149;AC=65;AF=0.345745;AN=188;AO=2371;CIGAR=1X;DP=7415;DPB=7415;DPRA=1.78448;EPP=5151.57;EPPR=10929.9;GTI=34;LEN=1;MEANALT=1.09756;MQM=25.4926;MQMR=25.9384;NS=94;NUMALT=1;ODDS=1.41894;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79469;QR=180063;RO=5036;RPL=2371;RPP=5151.57;RPPR=10929.9;RPR=0;RUN=1;SAF=0;SAP=5151.57;SAR=2371;SRF=0;SRP=10938.5;SRR=5036;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:26,10:26:936:10:341:-19.901,0,-57.5029	0/0:59:59,0:59:2124:0:0:0,-17.7608,-154.127	0/0:78:76,2:76:2720:2:72:0,-16.6436,-190.116	0/1:125:73,52:73:2605:52:1627:-19.9346,0,-121.459	0/1:70:22,48:22:792:48:1617:-33.0492,0,-31.6735	0/0:34:34,0:34:1216:0:0:0,-10.235,-89.3097	0/1:79:40,39:40:1432:39:1342:-55.8489,0,-61.2333	0/0:33:31,2:31:1116:2:72:0,-3.54817,-75.5615	0/1:56:37,19:37:1324:19:680:-44.6551,0,-80.1277	0/1:54:24,30:24:864:30:993:-17.7297,0,-36.8566	0/0:87:64,23:64:2281:23:794:0,-1.44021,-112.747	0/0:41:41,0:41:1472:0:0:0,-12.3422,-105.626	0/1:54:34,20:34:1220:20:678:-45.0698,0,-73.8343	0/1:55:25,30:25:892:30:989:-15.0764,0,-41.8872	0/1:51:22,29:22:792:29:994:-45.3264,0,-31.8807	0/1:47:34,13:34:1216:13:426:-14.4026,0,-66.6842	0/0:18:18,0:18:640:0:0:0,-5.41854,-47.2918	0/0:11:11,0:11:396:0:0:0,-3.31133,-28.1	0/1:20:13,7:13:468:7:218:-13.8955,0,-28.2018	0/1:92:45,47:45:1612:47:1521:-64.0184,0,-69.1722	0/1:126:73,53:73:2605:53:1704:-58.114,0,-135.211	0/1:86:49,37:49:1764:37:1290:-65.1617,0,-53.8088	0/1:109:60,48:60:2137:48:1580:-65.094,0,-96.0369	0/1:64:18,46:18:640:46:1534:-26.8047,0,-23.4745	0/1:50:34,16:34:1216:16:538:-6.44575,0,-67.2409	0/1:181:104,77:104:3732:77:2620:-109.527,0,-118.326	0/1:173:98,75:98:3516:75:2567:-90.2833,0,-181.626	0/1:23:15,8:15:540:8:268:-0.362405,0,-29.7936	0/1:133:73,60:73:2620:60:2079:-82.839,0,-83.2967	0/1:106:68,38:68:2436:38:1230:-17.4241,0,-129.973	0/1:87:47,40:47:1676:40:1393:-18.5493,0,-75.4045	0/1:14:12,2:12:428:2:72:-0.15301,0,-18.1854	0/0:210:200,10:200:7149:10:333:0,-47.5037,-458.692	0/0:108:108,0:108:3869:0:0:0,-32.5112,-273.571	0/0:17:17,0:17:608:0:0:0,-5.11751,-33.9943	0/0:248:244,4:244:8725:4:144:0,-61.3418,-618.896	0/1:202:87,114:87:3109:114:3655:-93.3659,0,-87.4785	0/1:115:60,55:60:2140:55:1798:-14.9304,0,-107.457	0/0:38:38,0:38:1368:0:0:0,-11.4391,-94.173	0/0:106:105,1:105:3749:1:36:0,-29.0064,-245.802	0/1:90:37,53:37:1313:53:1683:-62.1488,0,-61.023	0/1:36:21,15:21:752:15:457:-3.73029,0,-38.0581	0/1:139:79,60:79:2821:60:1958:-91.1769,0,-147.378	0/1:36:17,19:17:608:19:645:-28.6439,0,-26.6473	0/1:47:15,32:15:540:32:956:-19.8793,0,-18.8561	0/1:102:34,68:34:1220:68:2382:-105.236,0,-26.3594	0/0:36:35,1:35:1252:1:36:0,-7.24785,-86.5633	0/1:84:43,41:43:1529:41:1422:-60.9144,0,-71.8632	0/1:68:33,35:33:1184:35:1186:-17.1102,0,-50.0476	0/1:54:31,23:31:1116:23:801:-31.776,0,-51.2711	0/1:88:30,58:30:1042:58:1975:-53.7188,0,-26.8143	0/0:160:159,1:159:5666:1:32:0,-46.9688,-338.145	0/1:71:39,32:39:1396:32:1050:-73.2244,0,-81.8238	0/1:53:36,17:36:1284:17:593:-20.7829,0,-46.515	0/0:82:82,0:82:2902:0:0:0,-24.6845,-211.568	0/1:71:42,29:42:1504:29:964:-4.68967,0,-81.2255	0/1:50:31,19:31:1108:19:627:-5.42697,0,-50.4941	0/0:97:97,0:97:3446:0:0:0,-29.1999,-158.436	0/0:101:93,7:93:3325:7:229:0,-19.1358,-146.039	0/1:65:42,23:42:1508:23:786:-1.15618,0,-80.426	0/1:101:46,55:46:1652:55:1914:-76.4171,0,-69.5997	0/0:99:97,2:97:3473:2:72:0,-27.525,-208.361	0/1:58:26,32:26:928:32:1086:-28.0503,0,-28.5655	0/1:111:59,52:59:2097:52:1696:-63.0398,0,-95.3328	0/1:18:7,11:7:252:11:388:-4.56896,0,-9.85819	0/1:24:15,9:15:532:9:312:-2.50458,0,-24.9879	0/1:146:91,55:91:3261:55:1820:-64.1444,0,-149.747	0/1:102:59,43:59:2116:43:1423:-62.6362,0,-96.8617	0/0:56:38,17:38:1355:17:559:0,-1.49177,-70.9235	0/0:24:24,0:24:856:0:0:0,-7.22472,-63.1023	0/1:47:30,17:30:1061:17:570:-8.54161,0,-36.701	0/0:177:174,2:174:6194:2:57:0,-48.6936,-366.118	0/0:48:46,2:46:1652:2:72:0,-8.6089,-112.772	0/1:28:18,10:18:644:10:329:-21.4833,0,-37.971	0/1:123:81,42:81:2900:42:1430:-1.01192,0,-157.254	0/1:52:35,17:35:1252:17:585:-2.75253,0,-62.0002	0/1:104:76,27:76:2716:27:833:-43.9172,0,-166.493	0/1:34:27,7:27:968:7:237:-11.424,0,-60.8086	0/0:181:180,1:180:6419:1:36:0,-50.8882,-448.857	0/1:65:34,31:34:1220:31:1029:-8.27058,0,-62.5711	0/0:47:46,1:46:1652:1:36:0,-11.4998,-117.246	0/1:139:61,78:61:2192:78:2697:-41.7322,0,-88.8717	0/1:53:27,26:27:957:26:883:-11.7318,0,-41.6301	0/1:50:23,27:23:828:27:938:-14.3718,0,-35.6293	0/1:22:12,10:12:432:10:356:-4.28041,0,-19.6388	0/1:90:35,55:35:1241:55:1881:-32.7989,0,-49.0933	0/1:11:7,4:7:248:4:136:-9.26421,0,-15.3631	0/0:33:33,0:33:1184:0:0:0,-9.93399,-82.3309	0/0:34:31,3:31:1116:3:108:0,-0.15985,-71.5477	0/0:98:81,17:81:2904:17:581:0,-14.1477,-173.914	0/1:226:180,46:180:6448:46:1598:-27.6016,0,-355.148	0/1:54:29,25:29:1036:25:823:-42.925,0,-48.1696	0/1:56:39,17:39:1396:17:585:-1.45862,0,-68.1706	0/1:77:34,42:34:1220:42:1412:-25.4134,0,-49.4776
chr04	2619465	.	CAAA	AAAA,AAAG	175269	PASS	AB=0.506744,0.491163;ABP=4.7091,5.92714;AC=142,46;AF=0.755319,0.244681;AN=188;AO=6031,2132;CIGAR=1X3M,1X2M1X;DP=8176;DPB=8176;DPRA=10.4335,1.39274;EPP=13029.8,4623.91;EPPR=7.35324;GTI=2;LEN=1,4;MEANALT=1.59783,2.10638;MQM=59.9945,59.9733;MQMR=60;NS=94;NUMALT=2;ODDS=1.81165;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=215207,75966;QR=72;RO=2;RPL=8,1;RPP=13029.8,4623.91;RPPR=7.35324;RPR=6023,2131;RUN=1,1;SAF=6031,2132;SAP=13099.2,4632.59;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:59:0,22,37:0:0:22,37:788,1316:-171.869,-107.604,-100.981,-64.6221,0,-53.484	1/1:68:0,68,0:0:0:68,0:2432,0:-219.136,-20.47,0,-219.136,-20.47,-219.136	1/1:139:0,138,0:0:0:138,0:4919,0:-442.503,-41.5421,0,-442.503,-41.5421,-442.503	1/1:217:0,217,0:0:0:217,0:7730,0:-695.734,-65.3235,0,-695.734,-65.3235,-695.734	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/2:99:0,53,45:0:0:53,45:1904,1608:-286.429,-131.104,-115.15,-155.323,0,-141.777	1/1:142:0,142,0:0:0:142,0:5073,0:-456.715,-42.7463,0,-456.715,-42.7463,-456.715	1/2:142:0,78,64:0:0:78,64:2776,2294:-413.7,-187.455,-163.975,-226.602,0,-207.336	1/1:94:0,94,0:0:0:94,0:3338,0:-300.636,-28.2968,0,-300.636,-28.2968,-300.636	1/1:21:0,21,0:0:0:21,0:748,0:-67.6453,-6.32163,0,-67.6453,-6.32163,-67.6453	1/1:83:0,83,0:0:0:83,0:2961,0:-266.722,-24.9855,0,-266.722,-24.9855,-266.722	1/2:66:0,34,32:0:0:34,32:1220,1130:-191.891,-92.3749,-82.1399,-99.8718,0,-90.2388	1/1:35:0,35,0:0:0:35,0:1256,0:-113.345,-10.5361,0,-113.345,-10.5361,-113.345	1/2:73:0,35,38:0:0:35,38:1256,1366:-214.252,-111.802,-101.266,-102.809,0,-91.3701	1/2:41:0,23,18:0:0:23,18:822,648:-120.254,-53.2333,-46.3097,-67.379,0,-61.9604	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:38:0,38,0:0:0:38,0:1368,0:-123.421,-11.4391,0,-123.421,-11.4391,-123.421	1/2:14:0,9,5:0:0:9,5:320,180:-41.1218,-15.0469,-12.3376,-26.4331,0,-24.9279	1/2:148:0,83,65:0:0:83,65:2961,2315:-430.425,-189.043,-164.058,-241.738,0,-222.171	1/2:203:0,115,88:0:0:115,88:4124,3121:-590.984,-254.615,-219.996,-336.725,0,-310.235	1/2:103:0,37,66:0:0:37,66:1324,2361:-300.847,-192.881,-181.743,-108.324,0,-88.456	1/2:113:0,73,39:0:0:73,39:2590,1387:-324.075,-113.058,-91.0831,-211.041,0,-199.301	1/2:56:0,45,11:0:0:45,11:1616,389:-163.866,-32.0368,-18.4904,-132.184,0,-128.872	1/2:105:0,51,54:0:0:51,54:1827,1922:-306.003,-157.002,-141.649,-149.358,0,-133.103	1/2:325:0,143,180:0:0:143,180:5079,6427:-937.824,-523.975,-480.928,-413.845,0,-359.66	1/2:130:0,89,41:0:0:89,41:3177,1463:-378.628,-119.624,-92.832,-259.361,0,-247.019	1/1:19:0,19,0:0:0:19,0:665,0:-60.1736,-5.71957,0,-60.1736,-5.71957,-60.1736	1/2:268:0,142,126:0:0:142,126:5050,4508:-779.501,-367.958,-325.212,-411.899,0,-373.969	1/2:119:0,65,54:0:0:65,54:2317,1902:-344.068,-155.201,-135.634,-189.222,0,-172.966	1/1:132:0,132,0:0:0:132,0:4697,0:-422.892,-39.736,0,-422.892,-39.736,-422.892	1/2:6:0,1,5:0:0:1,5:36,168:-16.8866,-13.9452,-13.6442,-3.29724,0,-1.79209	1/2:6:0,1,5:0:0:1,5:36,179:-17.893,-14.9552,-14.6542,-3.29724,0,-1.79209	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:3:0,3,0:0:0:3,0:102,0:-9.51638,-0.90309,0,-9.51638,-0.90309,-9.51638	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/1:152:0,152,0:0:0:152,0:5460,0:-491.526,-45.7566,0,-491.526,-45.7566,-491.526	1/1:147:0,146,0:0:0:146,0:5241,0:-471.545,-43.9504,0,-471.545,-43.9504,-471.545	1/1:27:0,26,0:0:0:26,0:936,0:-84.1996,-7.82678,0,-84.1996,-7.82678,-84.1996	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:106:0,43,63:0:0:43,63:1521,2254:-308.04,-184.158,-171.214,-124.237,0,-105.272	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:114:0,70,44:0:0:70,44:2489,1564:-330.639,-127.805,-106.733,-203.19,0,-189.945	1/2:46:0,22,24:0:0:22,24:784,863:-134.671,-70.7677,-64.1451,-64.2613,0,-57.0365	1/1:36:0,36,0:0:0:36,0:1296,0:-116.944,-10.8371,0,-116.944,-10.8371,-116.944	1/2:131:0,85,46:0:0:85,46:3021,1635:-379.769,-133.591,-108.004,-246.533,0,-232.685	1/1:118:0,118,0:0:0:118,0:4209,0:-378.99,-35.5215,0,-378.99,-35.5215,-378.99	1/2:219:0,119,99:0:0:119,99:4253,3530:-634.661,-287.892,-252.069,-346.914,0,-317.112	1/1:69:0,69,0:0:0:69,0:2425,0:-218.503,-20.7711,0,-218.503,-20.7711,-218.503	1/2:175:0,71,103:0:0:71,103:2556,3692:-509.674,-301.117,-279.744,-208.557,0,-177.551	1/1:102:0,100,1:0:0:100,1:3573,26:-321.519,-30.103,0,-319.481,-28.0592,-319.18	2/2:16:0,0,16:0:0:0,16:0,571:-51.7231,-51.7231,-51.7231,-4.81648,-4.81648,0	1/2:139:0,62,77:0:0:62,77:2201,2729:-402.01,-222.674,-204.011,-179.69,0,-156.511	1/2:72:0,44,28:0:0:44,28:1568,990:-208.797,-80.985,-67.7397,-128.166,0,-119.737	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:136:0,136,0:0:0:136,0:4843,0:-436.017,-40.9401,0,-436.017,-40.9401,-436.017	1/1:54:0,54,0:0:0:54,0:1913,0:-172.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chr04	2619531	.	A	G	96376.7	PASS	AB=0.512452;ABP=6.84979;AC=140;AF=0.76087;AN=184;AO=4687;CIGAR=1X;DP=6093;DPB=6093;DPRA=13.5178;EPP=10180.7;EPPR=2929.2;GTI=1;LEN=1;MEANALT=1.03333;MQM=59.9898;MQMR=59.9686;NS=92;NUMALT=1;ODDS=3.79933;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164344;QR=49912;RO=1403;RPL=0;RPP=10180.7;RPPR=2929.2;RPR=4687;RUN=1;SAF=0;SAP=10180.7;SAR=4687;SRF=0;SRP=3049.59;SRR=1403;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:17,19:17:608:19:667:-49.5175,0,-44.2149	1/1:31:0,31:0:0:31:1081:-97.5966,-9.33193,0	1/1:94:0,94:0:0:94:3301:-297.312,-28.2968,0	1/1:193:0,193:0:0:193:6787:-610.913,-58.0988,0	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	1/1:14:0,14:0:0:14:482:-43.7061,-4.21442,0	0/1:80:42,38:42:1512:38:1328:-95.7373,0,-112.292	1/1:105:0,105:0:0:105:3705:-333.653,-31.6082,0	0/1:59:36,23:36:1271:23:815:-55.91,0,-96.9313	1/1:96:0,96:0:0:96:3410:-307.114,-28.8989,0	1/1:38:0,38:0:0:38:1290:-116.392,-11.4391,0	1/1:67:0,67:0:0:67:2350:-211.757,-20.169,0	0/1:66:31,35:31:1100:35:1244:-92.3967,0,-79.4423	1/1:70:0,70:0:0:70:2405:-216.704,-21.0721,0	0/1:59:32,27:32:1106:27:935:-66.7002,0,-82.0815	0/1:46:19,27:19:676:27:903:-67.7251,0,-47.3206	1/1:24:0,24:0:0:24:847:-76.5487,-7.22472,0	1/1:28:0,28:0:0:28:991:-89.5022,-8.42884,0	0/1:21:10,11:10:356:11:387:-28.8443,0,-26.0596	0/1:75:34,41:34:1224:41:1441:-107.407,0,-87.8898	0/1:118:53,65:53:1887:65:2270:-169.037,0,-134.586	0/1:47:34,13:34:1220:13:459:-27.4957,0,-95.9584	0/1:104:43,61:43:1516:61:2162:-163.537,0,-105.423	0/1:65:8,57:8:269:57:2006:-161.246,0,-4.96918	0/1:37:16,21:16:564:21:711:-53.1647,0,-39.9522	0/1:213:98,114:98:3503:114:4051:-300.691,0,-251.391	0/1:142:73,69:73:2586:69:2391:-172.698,0,-190.243	1/1:27:0,27:0:0:27:944:-85.2727,-8.12781,0	0/1:144:83,61:83:2959:61:2155:-150.869,0,-223.195	0/1:137:76,61:76:2708:61:2118:-149.645,0,-202.722	1/1:130:0,130:0:0:130:4554:-410.03,-39.1339,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	1/1:130:0,130:0:0:130:4590:-413.268,-39.1339,0	1/1:111:0,111:0:0:111:3866:-348.138,-33.4143,0	1/1:25:0,25:0:0:25:874:-78.9752,-7.52575,0	.:.:.:.:.:.:.:.	0/1:124:59,65:59:2101:65:2281:-168.222,0,-152.03	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:51:22,29:22:775:29:1009:-75.7662,0,-54.7187	0/1:41:26,15:26:932:15:532:-35.8675,0,-71.8566	1/1:56:0,56:0:0:56:1971:-177.663,-16.8577,0	0/1:63:24,39:24:864:39:1350:-102.829,0,-59.1177	1/1:85:1,84:1:36:84:2948:-261.956,-21.9893,0	0/1:122:53,69:53:1883:69:2399:-179.438,0,-132.705	1/1:63:0,63:0:0:63:2194:-197.723,-18.9649,0	0/1:61:28,33:28:996:33:1149:-85.3508,0,-71.5921	1/1:54:0,54:0:0:54:1897:-171.006,-16.2556,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:71:27,44:27:972:44:1559:-119.228,0,-66.4248	0/1:51:23,28:23:812:28:991:-74.151,0,-58.0484	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:106:0,106:0:0:106:3733:-336.175,-31.9092,0	1/1:39:0,39:0:0:39:1358:-122.517,-11.7402,0	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	1/1:69:1,67:1:36:67:2356:-208.698,-17.2316,0	0/1:73:34,39:34:1204:39:1376:-102.163,0,-86.6907	1/1:4:0,4:0:0:4:131:-12.1126,-1.20412,0	1/1:141:0,140:0:0:140:4942:-444.617,-42.1442,0	0/1:127:52,75:52:1855:75:2640:-199.616,0,-128.998	0/1:70:34,36:34:1200:36:1246:-91.3682,0,-87.2335	1/1:48:0,48:0:0:48:1680:-151.484,-14.4494,0	0/1:109:57,52:57:2027:52:1840:-133.068,0,-149.89	0/1:84:58,26:58:2059:26:915:-57.379,0,-160.294	1/1:20:0,20:0:0:20:695:-62.8714,-6.0206,0	1/1:18:0,18:0:0:18:631:-57.1157,-5.41854,0	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	0/1:20:11,9:11:392:9:320:-23.1218,0,-29.5995	1/1:100:0,100:0:0:100:3483:-313.684,-30.103,0	0/1:43:20,23:20:720:23:805:-59.7368,0,-52.1829	1/1:127:0,127:0:0:127:4441:-399.866,-38.2308,0	1/1:140:1,139:1:36:139:4917:-439.086,-38.5459,0	0/1:67:27,40:27:964:40:1411:-107.118,0,-66.8996	0/1:75:41,34:41:1464:34:1188:-84.6449,0,-109.479	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:79:0,79:0:0:79:2787:-251.071,-23.7814,0	1/1:98:0,98:0:0:98:3446:-310.348,-29.5009,0	1/1:147:0,147:0:0:147:5143:-463.02,-44.2514,0	1/1:47:0,47:0:0:47:1639:-147.794,-14.1484,0	1/1:62:0,62:0:0:62:2192:-197.544,-18.6639,0	1/1:48:0,48:0:0:48:1692:-152.564,-14.4494,0	1/1:84:0,84:0:0:84:2948:-265.556,-25.2865,0	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	1/1:56:0,56:0:0:56:1948:-175.594,-16.8577,0	1/1:56:0,56:0:0:56:1936:-174.512,-16.8577,0	1/1:34:1,33:1:36:33:1159:-101.018,-6.63675,0	0/1:52:26,26:26:915:26:903:-65.9302,0,-67.012	0/1:62:45,17:45:1604:17:593:-35.0309,0,-125.986	1/1:81:0,81:0:0:81:2820:-254.036,-24.3834,0	1/1:80:0,80:0:0:80:2763:-248.913,-24.0824,0
chr04	2619541	.	GGG	GGA,AGA	131355	PASS	AB=0.509934,0.486581;ABP=5.46938,7.49781;AC=140,44;AF=0.76087,0.23913;AN=184;AO=4723,1409;CIGAR=2M1X,1X1M1X;DP=6153;DPB=6162;DPRA=13.6511,1.14889;EPP=10250.2,3062.61;EPPR=3.0103;GTI=1;LEN=1,3;MEANALT=1.66667,2.15556;MQM=59.9915,59.9709;MQMR=60;NS=92;NUMALT=2;ODDS=3.70963;PAIRED=0,0;PAIREDR=0;PAO=7,13.5;PQA=16,484;PQR=0;PRO=6.5;QA=168310,49419;QR=69;RO=2;RPL=1,0;RPP=10250.2,3062.61;RPPR=3.0103;RPR=4722,1409;RUN=1,1;SAF=0,0;SAP=10258.9,3062.61;SAR=4723,1409;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:36:0,19,17:0:0:19,17:671,581:-102.142,-47.4924,-41.7728,-54.9962,0,-49.8787	1/1:31:0,31,0:0:0:31,0:1108,0:-100.031,-9.33193,0,-100.031,-9.33193,-100.031	1/1:95:0,94,0:0:0:94,0:3347,0:-301.085,-28.2968,0,-301.085,-28.2968,-301.085	1/1:193:0,192,0:0:0:192,0:6854,0:-616.589,-57.7978,0,-616.589,-57.7978,-616.589	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/1:16:0,15,0:0:0:15,0:518,0:-46.6896,-4.51545,0,-46.6896,-4.51545,-46.6896	1/2:80:0,37,43:0:0:37,43:1332,1501:-231.127,-122.438,-111.3,-109.044,0,-96.1	1/1:106:0,106,0:0:0:106,0:3800,0:-342.197,-31.9092,0,-342.197,-31.9092,-342.197	1/2:59:0,23,35:0:0:23,35:828,1214:-166.276,-98.7095,-91.7858,-67.602,0,-57.066	1/1:95:0,95,0:0:0:95,0:3408,0:-306.934,-28.5979,0,-306.934,-28.5979,-306.934	1/1:40:0,38,0:0:0:38,0:1357,0:-122.151,-11.4391,0,-122.151,-11.4391,-122.151	1/1:69:0,69,0:0:0:69,0:2463,0:-221.924,-20.7711,0,-221.924,-20.7711,-221.924	1/2:66:0,35,31:0:0:35,31:1260,1079:-190.901,-88.0853,-77.5493,-103.169,0,-93.8375	1/1:71:0,71,0:0:0:71,0:2511,0:-226.243,-21.3731,0,-226.243,-21.3731,-226.243	1/2:58:0,26,32:0:0:26,32:924,1091:-164.161,-88.8593,-81.0326,-75.6509,0,-66.0179	1/2:48:0,29,19:0:0:29,19:1027,665:-138.116,-54.4553,-45.7254,-84.0123,0,-78.2927	1/1:24:0,24,0:0:0:24,0:851,0:-76.9095,-7.22472,0,-76.9095,-7.22472,-76.9095	1/1:29:0,29,0:0:0:29,0:1036,0:-93.5506,-8.72987,0,-93.5506,-8.72987,-93.5506	1/2:21:0,12,9:0:0:12,9:423,324:-60.873,-26.4368,-22.8244,-34.4335,0,-31.7242	1/2:76:0,42,34:0:0:42,34:1490,1215:-220.816,-99.4219,-86.7786,-121.75,0,-111.515	1/2:120:0,65,55:0:0:65,55:2288,1913:-342.15,-155.889,-136.322,-186.611,0,-170.054	1/2:46:0,12,34:0:0:12,34:423,1200:-132.512,-98.0717,-94.4593,-34.7927,0,-24.5577	1/2:107:0,62,45:0:0:62,45:2211,1587:-309.808,-129.574,-110.91,-180.589,0,-167.043	1/2:65:0,57,8:0:0:57,8:2034,271:-188.143,-22.3106,-5.15186,-166.173,0,-163.765	1/2:38:0,21,17:0:0:21,17:752,597:-110.271,-48.9409,-42.6192,-61.6846,0,-56.5671	1/2:216:1,114,100:1:36:114,100:4072,3515:-614.911,-283.217,-251.837,-329.105,0,-301.939	1/2:144:0,68,73:0:0:68,73:2400,2560:-403.851,-208.415,-187.945,-195.521,0,-173.546	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/2:141:0,59,82:0:0:59,82:2111,2895:-407.886,-235.744,-217.984,-172.138,0,-147.453	1/2:137:0,62,74:0:0:62,74:2210,2584:-390.319,-210.173,-191.509,-180.14,0,-157.864	1/1:134:0,134,0:0:0:134,0:4786,0:-430.896,-40.338,0,-430.896,-40.338,-430.896	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	2/2:9:0,0,9:0:0:0,9:0,323:-29.4151,-29.4151,-29.4151,-2.70927,-2.70927,0	1/1:130:0,129,1:0:0:129,1:4631,36:-416.591,-38.8329,0,-413.654,-35.5356,-413.353	1/1:113:0,113,0:0:0:113,0:4010,0:-361.09,-34.0164,0,-361.09,-34.0164,-361.09	1/1:25:0,25,0:0:0:25,0:882,0:-79.6965,-7.52575,0,-79.6965,-7.52575,-79.6965	.:.:.:.:.:.:.:.	1/2:127:0,68,59:0:0:68,59:2422,2065:-365.411,-167.999,-147.529,-197.405,0,-179.644	1/1:15:0,15,0:0:0:15,0:523,0:-47.3985,-4.51545,0,-47.3985,-4.51545,-47.3985	1/2:50:0,29,20:0:0:29,20:1022,714:-141.414,-58.2075,-49.4776,-83.2024,0,-77.1818	1/2:42:0,16,26:0:0:16,26:570,913:-121.12,-74.6587,-69.8422,-46.8151,0,-38.9883	1/1:56:0,56,0:0:0:56,0:2016,0:-181.713,-16.8577,0,-181.713,-16.8577,-181.713	1/2:64:0,40,24:0:0:40,24:1409,840:-183.046,-68.3335,-56.2923,-114.704,0,-107.479	1/1:86:0,86,0:0:0:86,0:3079,0:-277.338,-25.8886,0,-277.338,-25.8886,-277.338	1/2:121:0,68,53:0:0:68,53:2420,1872:-349.719,-152.487,-132.017,-197.586,0,-181.632	1/1:64:0,64,0:0:0:64,0:2296,0:-206.901,-19.2659,0,-206.901,-19.2659,-206.901	1/2:60:0,32,28:0:0:32,28:1130,985:-172.556,-80.5348,-70.9019,-92.3732,0,-83.9443	1/1:55:0,55,0:0:0:55,0:1960,0:-176.675,-16.5567,0,-176.675,-16.5567,-176.675	1/2:10:0,7,3:0:0:7,3:252,108:-29.734,-9.17208,-7.06487,-20.9217,0,-20.0187	1/2:71:0,43,28:0:0:43,28:1540,981:-205.769,-80.1736,-67.2293,-125.949,0,-117.52	1/2:52:0,27,24:0:0:27,24:972,846:-148.189,-68.8745,-60.7467,-79.3103,0,-72.0856	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:107:0,107,0:0:0:107,0:3805,0:-342.648,-32.2102,0,-342.648,-32.2102,-342.648	1/1:39:0,39,0:0:0:39,0:1382,0:-124.677,-11.7402,0,-124.677,-11.7402,-124.677	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:8:0,3,5:0:0:3,5:108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chr04	2626922	.	C	G	27361.5	PASS	AB=0.515876;ABP=9.97389;AC=44;AF=0.234043;AN=188;AO=1645;CIGAR=1X;DP=6221;DPB=6221;DPRA=1.30507;EPP=3575.08;EPPR=9928.81;GTI=1;LEN=1;MEANALT=1.04167;MQM=60;MQMR=59.9919;NS=94;NUMALT=1;ODDS=0.343639;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58306;QR=162790;RO=4571;RPL=0;RPP=3575.08;RPPR=9928.81;RPR=1645;RUN=1;SAF=0;SAP=3575.08;SAR=1645;SRF=0;SRP=9928.81;SRR=4571;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:24,23:24:847:23:782:-56.5428,0,-62.4003	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:164:164,0:164:5829:0:0:0,-49.3689,-524.726	0/0:174:174,0:174:6195:0:0:0,-52.3792,-557.648	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9546	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:39:17,22:17:608:22:792:-59.8655,0,-43.3119	0/0:114:114,0:114:4043:0:0:0,-34.3174,-364.058	0/1:50:18,32:18:648:32:1128:-86.774,0,-43.6004	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:74:74,0:74:2621:0:0:0,-22.2762,-236.137	0/1:63:29,34:29:1036:34:1216:-90.7817,0,-74.589	0/0:54:54,0:54:1908:0:0:0,-16.2556,-171.995	0/1:47:27,20:27:963:20:720:-50.9804,0,-72.8375	0/1:42:23,19:23:813:19:663:-47.3502,0,-60.8458	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/1:31:12,19:12:423:19:680:-52.1972,0,-29.0731	0/1:201:120,81:120:4300:81:2874:-198.39,0,-326.669	0/1:107:52,55:52:1855:55:1961:-144.553,0,-135.019	0/1:67:19,48:19:675:48:1693:-132.484,0,-40.9042	0/1:82:48,34:48:1724:34:1212:-84.7019,0,-130.761	0/1:43:37,6:37:1319:6:216:-6.84622,0,-106.067	0/1:51:20,31:20:716:31:1079:-82.0624,0,-49.4152	0/1:163:80,83:80:2862:83:2967:-218.195,0,-208.748	0/1:145:70,75:70:2495:75:2672:-197.077,0,-181.153	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/1:207:93,113:93:3314:113:3990:-296.92,0,-236.106	0/1:87:46,41:46:1652:41:1459:-105.416,0,-122.779	0/0:69:68,0:68:2436:0:0:0,-20.47,-219.135	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:14:12,2:12:432:2:62:-1.67378,0,-35.0068	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/0:134:133,0:133:4729:0:0:0,-40.037,-425.411	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:47:47,0:47:1668:0:0:0,-14.1484,-150.407	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:80:39,41:39:1400:41:1450:-106.712,0,-102.217	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/1:164:81,83:81:2889:83:2958:-217.084,0,-210.876	0/1:30:18,12:18:636:12:413:-28.4669,0,-48.5371	0/0:61:61,0:61:2141:0:0:0,-18.3628,-192.951	0/1:92:34,56:34:1207:56:1999:-152.73,0,-81.483	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/1:123:66,57:66:2346:57:2026:-145.585,0,-174.372	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:126:64,62:64:2272:62:2187:-159.164,0,-166.81	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.636	0/1:10:5,5:5:180:5:171:-12.7152,0,-13.5418	0/1:63:36,27:36:1292:27:962:-67.9314,0,-97.6189	0/1:56:32,24:32:1139:24:856:-60.5034,0,-85.9607	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:152:152,0:152:5407:0:0:0,-45.7566,-486.761	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:12:5,7:5:180:7:243:-18.5951,0,-12.9397	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:72:40,32:40:1436:32:1148:-81.9557,0,-107.864	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:135:49,86:49:1743:86:3056:-234.629,0,-116.515	0/1:44:17,27:17:608:27:972:-74.5526,0,-41.8067	0/0:54:54,0:54:1901:0:0:0,-16.2556,-171.366	0/1:159:72,87:72:2572:87:3074:-229.025,0,-183.866	0/1:120:37,83:37:1328:83:2948:-229.429,0,-83.6986	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:42:42,0:42:1473:0:0:0,-12.6433,-132.862	0/1:37:22,15:22:776:15:527:-36.6221,0,-59.024	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.249	0/1:104:51,53:51:1828:53:1877:-137.9,0,-133.494	0/0:93:92,1:92:3292:1:36:0,-24.3975,-292.901	0/0:130:129,1:129:4608:1:21:0,-37.034,-412.785	0/1:43:25,18:25:900:18:625:-43.6282,0,-68.3767	0/1:56:27,29:27:972:29:1035:-76.6054,0,-70.9402	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/0:81:80,1:80:2845:1:36:0,-20.7852,-252.689	0/0:106:106,0:106:3779:0:0:0,-31.9092,-340.31	0/0:137:137,0:137:4882:0:0:0,-41.2411,-439.531	0/0:35:35,0:35:1222:0:0:0,-10.536,-110.282	0/0:69:69,0:69:2431:0:0:0,-20.7711,-219.044	0/0:41:41,0:41:1447:0:0:0,-12.3422,-130.525	0/0:102:101,1:101:3591:1:36:0,-27.1068,-319.8	0/1:23:13,10:13:455:10:338:-23.8223,0,-34.3583	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.465	0/0:65:65,0:65:2307:0:0:0,-19.5669,-207.891	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.393	0/1:73:32,41:32:1132:41:1431:-107.107,0,-80.2134	0/1:45:12,33:12:419:33:1179:-92.8709,0,-24.4963	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.451
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chr04	2769281	.	G	A	36508.6	PASS	AB=0.577386;ABP=188.864;AC=43;AF=0.231183;AN=186;AO=2068;CIGAR=1X;DP=7120;DPB=7120;DPRA=1.28525;EPP=4458.94;EPPR=10772.1;GTI=5;LEN=1;MEANALT=1.08511;MQM=59.9923;MQMR=59.9974;NS=93;NUMALT=1;ODDS=0.138097;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73958;QR=180474;RO=5043;RPL=4;RPP=4458.94;RPPR=10772.1;RPR=2064;RUN=1;SAF=2068;SAP=4493.62;SAR=0;SRF=5043;SRP=10953.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:20,18:20:720:18:648:-47.2127,0,-53.6896	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.512	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:100:48,52:48:1713:52:1841:-135.865,0,-124.351	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/1:131:52,79:52:1868:79:2836:-216.043,0,-128.964	0/0:113:113,0:113:4034:0:0:0,-34.0164,-363.245	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:75:25,50:25:900:50:1796:-139.345,0,-58.7438	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:87:33,54:33:1179:54:1914:-146.344,0,-80.2276	0/1:43:21,22:21:756:22:788:-58.3005,0,-55.4229	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.5	0/1:28:14,13:14:504:13:463:-33.5195,0,-37.2105	0/1:127:47,80:47:1673:80:2864:-219.767,0,-112.624	0/1:81:24,57:24:864:57:2010:-156.786,0,-53.6991	0/1:101:16,85:16:576:85:3052:-244.505,0,-21.771	0/1:79:37,42:37:1332:42:1493:-110.881,0,-96.401	0/1:115:101,14:101:3613:14:504:-11.0796,0,-290.756	0/1:84:32,51:32:1133:51:1813:-138.104,0,-76.9315	0/1:339:160,178:160:5756:178:6354:-469.841,0,-416.044	0/1:168:84,84:84:3012:84:3014:-220.917,0,-220.738	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:180:69,111:69:2465:111:3988:-304.923,0,-167.917	0/1:104:32,71:32:1133:71:2544:-197.845,0,-70.9109	0/0:108:107,0:107:3806:0:0:0,-32.2102,-342.483	.:.:.:.:.:.:.:.	0/1:16:9,7:9:324:7:239:-17.0254,0,-24.6894	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:205:204,0:204:7312:0:0:0,-61.4101,-657.769	0/0:194:194,0:194:6953:0:0:0,-58.3998,-625.832	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:6:2,4:2:57:4:144:-11.5074,0,-3.60713	0/1:114:41,73:41:1468:73:2628:-202.449,0,-98.0987	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:129:48,81:48:1709:81:2878:-220.421,0,-115.261	0/1:39:22,17:22:788:17:597:-42.316,0,-59.5046	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:134:61,73:61:2196:73:2612:-194.99,0,-157.567	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.797	0/1:114:56,58:56:2012:58:2080:-153.153,0,-147.036	0/0:70:69,0:69:2480:0:0:0,-20.7711,-223.093	0/1:108:36,72:36:1281:72:2577:-199.61,0,-83.08	0/0:183:183,0:183:6519:0:0:0,-55.0885,-586.792	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:90:32,58:32:1137:58:2088:-161.097,0,-75.5443	0/1:37:16,21:16:568:21:741:-55.8735,0,-40.3138	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:50:50,0:50:1772:0:0:0,-15.0515,-159.76	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:56:54,2:54:1940:2:72:0,-10.021,-168.039	0/1:105:44,61:44:1584:61:2192:-165.937,0,-111.243	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:99:98,1:98:3482:1:36:0,-26.2037,-309.991	0/1:159:73,86:73:2601:86:3073:-228.934,0,-186.473	0/1:50:22,28:22:792:28:1008:-75.9849,0,-56.5542	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/1:133:64,69:64:2274:69:2476:-183.056,0,-164.882	0/1:75:26,49:26:932:49:1754:-135.567,0,-61.6216	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.797	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:141:141,0:141:5041:0:0:0,-42.4452,-453.835	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1277	0/0:117:116,0:116:4138:0:0:0,-34.9195,-372.213	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/1:89:33,56:33:1184:56:1990:-152.58,0,-80.0766	0/1:57:13,44:13:468:44:1559:-123.441,0,-25.3009	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:74:73,0:73:2628:0:0:0,-21.9752,-236.554	0/0:183:182,1:182:6498:1:36:0,-51.4902,-581.305	0/0:102:102,0:102:3653:0:0:0,-30.7051,-328.972	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:131:130,1:130:4634:1:36:0,-35.8367,-413.623	0/1:45:20,25:20:720:25:900:-67.7747,0,-51.5824	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:50:20,30:20:705:30:1080:-82.4618,0,-48.7213	0/1:65:22,43:22:792:43:1548:-120.046,0,-52.0387	0/0:95:95,0:95:3366:0:0:0,-28.5978,-303.153	0/0:90:90,0:90:3225:0:0:0,-27.0927,-290.47
chr04	2769313	.	A	C	35610.6	PASS	AB=0.584664;ABP=221.418;AC=43;AF=0.231183;AN=186;AO=2057;CIGAR=1X;DP=6983;DPB=6983;DPRA=1.37577;EPP=4469.73;EPPR=10691;GTI=4;LEN=1;MEANALT=1.04167;MQM=60;MQMR=59.9931;NS=93;NUMALT=1;ODDS=1.19147;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72864;QR=175414;RO=4922;RPL=2056;RPP=4461.05;RPPR=10691;RPR=1;RUN=1;SAF=2056;SAP=4461.05;SAR=1;SRF=4922;SRP=10691;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/0:83:83,0:83:2932:0:0:0,-24.9855,-264.115	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:97:46,51:46:1644:51:1823:-135.151,0,-119.049	0/0:83:83,0:83:2944:0:0:0,-24.9855,-265.193	0/1:130:51,79:51:1811:79:2799:-213.015,0,-124.137	0/0:111:111,0:111:3968:0:0:0,-33.4143,-357.312	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:59:59,0:59:2111:0:0:0,-17.7608,-190.258	0/1:77:25,52:25:892:52:1812:-140.18,0,-57.4204	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.802	0/1:85:32,53:32:1148:53:1852:-141.37,0,-78.0423	0/1:44:21,23:21:756:23:820:-60.8772,0,-55.1219	0/0:46:46,0:46:1622:0:0:0,-13.8474,-146.267	0/0:42:42,0:42:1488:0:0:0,-12.6433,-134.215	0/1:28:15,13:15:536:13:450:-32.3997,0,-40.146	0/1:125:46,79:46:1652:79:2815:-215.961,0,-111.34	0/1:79:22,57:22:773:57:2027:-158.921,0,-46.1081	0/1:102:17,85:17:608:85:2961:-236.016,0,-24.347	0/1:77:35,42:35:1252:42:1496:-111.755,0,-89.8058	0/1:113:99,14:99:3521:14:504:-11.6817,0,-283.083	0/1:80:31,49:31:1108:49:1752:-133.882,0,-75.9486	0/1:330:158,172:158:5615:172:6071:-447.156,0,-406.134	0/1:165:81,84:81:2900:84:2960:-216.965,0,-211.566	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:175:66,108:66:2341:108:3837:-292.785,0,-158.209	0/1:104:33,71:33:1167:71:2527:-196.375,0,-74.0293	0/0:107:107,0:107:3807:0:0:0,-32.2102,-342.671	.:.:.:.:.:.:.:.	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:200:200,0:200:7144:0:0:0,-60.206,-643.02	0/0:184:184,0:184:6556:0:0:0,-55.3895,-590.124	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:109:35,74:35:1220:74:2632:-204.316,0,-77.2884	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:126:45,81:45:1599:81:2856:-219.347,0,-106.27	0/1:38:21,17:21:744:17:612:-43.9743,0,-55.8452	0/0:61:61,0:61:2170:0:0:0,-18.3628,-195.565	0/1:132:57,75:57:2017:75:2646:-198.651,0,-142.065	0/0:85:85,0:85:3031:0:0:0,-25.5875,-273.02	0/1:112:54,58:54:1923:58:2063:-152.225,0,-139.631	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/1:107:33,74:33:1172:74:2643:-205.906,0,-73.5773	0/0:178:177,1:177:6285:1:36:0,-49.9851,-562.145	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:88:32,56:32:1152:56:2000:-153.783,0,-77.4995	0/1:36:15,21:15:540:21:743:-56.3563,0,-38.0995	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:49:49,0:49:1715:0:0:0,-14.7505,-154.634	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:55:53,2:53:1896:2:68:0,-10.0989,-164.46	0/1:103:43,60:43:1536:60:2156:-163.301,0,-107.527	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:95:94,1:94:3336:1:36:0,-24.9996,-296.859	0/1:157:72,85:72:2570:85:2997:-222.699,0,-184.287	0/1:48:20,28:20:708:28:989:-74.8739,0,-49.5962	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:128:61,67:61:2154:67:2374:-175.386,0,-155.595	0/1:75:26,49:26:927:49:1735:-133.857,0,-61.1701	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:83:82,0:82:2936:0:0:0,-24.6845,-264.115	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/0:135:135,0:135:4811:0:0:0,-40.639,-433.147	0/1:33:13,19:13:460:19:680:-51.5368,0,-31.7434	0/0:118:118,0:118:4227:0:0:0,-35.5215,-380.609	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/1:88:31,57:31:1108:57:2004:-154.141,0,-73.5404	0/1:56:13,43:13:468:43:1515:-119.784,0,-25.602	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:70:69,0:69:2468:0:0:0,-20.7711,-222.014	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:185:184,1:184:6575:1:36:0,-52.0923,-588.234	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.078	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.711	0/0:132:131,1:131:4679:1:36:0,-36.1377,-417.673	0/1:45:20,25:20:704:25:883:-66.2411,0,-50.1382	0/0:64:64,0:64:2268:0:0:0,-19.2659,-204.381	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:51:20,31:20:712:31:1091:-83.1457,0,-49.0541	0/1:64:20,44:20:704:44:1551:-120.615,0,-44.4186	0/0:97:97,0:97:3455:0:0:0,-29.1999,-311.163	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784
chr04	2769482	.	GTT	CTC,GTC	228832	PASS	AB=0.561095,0.434917;ABP=181.844,205.956;AC=139,49;AF=0.739362,0.260638;AN=188;AO=8395,2413;CIGAR=1X1M1X,2M1X;DP=10834;DPB=10836;DPRA=0,1.07944;EPP=18232.5,5242.77;EPPR=9.52472;GTI=0;LEN=3,1;MEANALT=1.80851,2.35185;MQM=58.3575,59.1562;MQMR=60;NS=94;NUMALT=2;ODDS=0.602014;PAIRED=0,0;PAIREDR=0;PAO=6,0;PQA=216,0;PQR=0;PRO=0;QA=297270,86455;QR=108;RO=3;RPL=8395,2413;RPP=18232.5,5242.77;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=18232.5,5242.77;SAR=8395,2413;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22,0:0:0:22,0:771,0:-68.9971,-6.62266,0,-68.9971,-6.62266,-68.9971	1/2:99:0,61,38:0:0:61,38:2172,1368:-287.761,-111.775,-93.4124,-176.343,0,-164.904	1/2:146:0,71,75:0:0:71,75:2503,2681:-421.732,-218.935,-197.562,-203.15,0,-180.573	1/2:185:0,100,84:0:0:100,84:3516,3020:-525.025,-245.032,-214.929,-279.984,0,-254.698	1/1:54:0,54,0:0:0:54,0:1922,0:-172.027,-16.2556,0,-172.027,-16.2556,-172.027	1/1:46:0,46,0:0:0:46,0:1642,0:-147.898,-13.8474,0,-147.898,-13.8474,-147.898	1/2:149:0,86,63:0:0:86,63:3040,2258:-431.103,-184.109,-158.22,-247.35,0,-228.385	1/1:206:0,206,0:0:0:206,0:7316,0:-653.847,-62.0122,0,-653.847,-62.0122,-653.847	1/1:134:0,134,0:0:0:134,0:4771,0:-427.716,-40.338,0,-427.716,-40.338,-427.716	1/1:101:0,100,0:0:0:100,0:3550,0:-318.868,-30.103,0,-318.868,-30.103,-318.868	1/2:66:0,39,27:0:0:39,27:1399,968:-192.779,-79.2138,-67.4736,-113.923,0,-105.795	1/2:81:0,44,37:0:0:44,37:1573,1305:-234.661,-106.592,-93.3467,-128.423,0,-117.285	1/2:87:0,43,44:0:0:43,44:1539,1576:-254.18,-128.862,-115.917,-125.676,0,-112.43	1/2:77:0,43,34:0:0:43,34:1530,1224:-224.551,-100.222,-87.2776,-124.686,0,-114.451	1/1:80:0,80,0:0:0:80,0:2835,0:-254.891,-24.0824,0,-254.891,-24.0824,-254.891	1/2:100:0,54,46:0:0:54,46:1919,1656:-291.53,-135.19,-118.935,-156.697,0,-142.85	1/2:81:0,36,45:0:0:36,45:1285,1616:-235.463,-132.182,-121.345,-103.636,0,-90.0898	1/2:66:0,35,31:0:0:35,31:1242,1112:-191.838,-90.816,-80.28,-101.378,0,-92.0464	1/1:55:0,55,0:0:0:55,0:1957,0:-175.965,-16.5567,0,-175.965,-16.5567,-175.965	1/2:178:0,100,78:0:0:100,78:3554,2774:-514.36,-225.69,-195.587,-289.024,0,-265.544	1/2:196:0,116,79:0:0:116,79:4083,2821:-557.955,-228.957,-194.038,-328.99,0,-305.209	1/1:163:0,162,0:0:0:162,0:5734,0:-514.626,-48.7669,0,-514.626,-48.7669,-514.626	1/2:83:1,37,44:1:36:37,44:1300,1576:-230.81,-125.554,-117.354,-102.664,0,-92.3564	1/1:131:0,124,7:0:0:124,7:4394,252:-394.407,-37.3277,0,-373.849,-16.4106,-371.742	1/2:92:0,47,44:0:0:47,44:1652,1584:-261.219,-129.286,-115.138,-132.008,0,-118.763	1/2:271:0,191,80:0:0:191,80:6727,2864:-780.495,-233.475,-175.978,-547.017,0,-522.934	1/1:290:0,289,0:0:0:289,0:10235,0:-917.536,-86.9977,0,-917.536,-86.9977,-917.536	1/2:37:0,18,19:0:0:18,19:646,684:-108.819,-56.1615,-50.743,-53.0169,0,-47.2973	1/2:259:0,148,111:0:0:148,111:5214,3988:-749.126,-325.282,-280.73,-424.199,0,-390.785	1/2:145:0,90,54:0:0:90,54:3185,1936:-416.092,-157.978,-130.885,-258.218,0,-241.962	1/1:122:0,122,0:0:0:122,0:4311,0:-387.407,-36.7257,0,-387.407,-36.7257,-387.407	1/2:23:0,15,8:0:0:15,8:519,288:-65.9897,-23.8592,-19.3437,-42.4854,0,-40.0772	1/1:30:0,30,0:0:0:30,0:1042,0:-94.0863,-9.0309,0,-94.0863,-9.0309,-94.0863	1/2:14:0,5,9:0:0:5,9:175,324:-40.8319,-26.5964,-25.0912,-14.588,0,-11.8787	1/2:5:0,2,3:0:0:2,3:70,108:-14.8546,-9.17208,-8.57002,-6.03607,0,-5.13298	1/1:22:0,22,0:0:0:22,0:775,0:-69.9917,-6.62266,0,-69.9917,-6.62266,-69.9917	1/1:215:0,215,0:0:0:215,0:7671,0:-690.043,-64.7215,0,-690.043,-64.7215,-690.043	1/1:272:0,271,1:0:0:271,1:9603,36:-858.198,-81.5791,0,-855.266,-78.287,-854.965	1/2:72:1,36,33:1:36:36,33:1269,1184:-196.086,-93.6436,-85.744,-99.8243,0,-92.828	1/1:13:0,13,0:0:0:13,0:466,0:-42.2787,-3.91339,0,-42.2787,-3.91339,-42.2787	1/2:167:0,99,68:0:0:99,68:3494,2444:-481.523,-199.734,-169.932,-282.145,0,-261.675	1/2:57:1,23,33:1:36:23,33:824,1188:-160.465,-93.8579,-89.8716,-63.9689,0,-56.9725	1/2:100:0,56,43:0:0:56,43:1976,1544:-283.917,-124.705,-107.847,-159.225,0,-146.28	1/2:71:0,48,23:0:0:48,23:1711,828:-207.21,-67.834,-53.3846,-139.734,0,-132.811	1/1:69:0,69,0:0:0:69,0:2411,0:-216.907,-20.7711,0,-216.907,-20.7711,-216.907	1/1:139:0,139,0:0:0:139,0:4932,0:-442.087,-41.8432,0,-442.087,-41.8432,-442.087	1/1:128:0,128,0:0:0:128,0:4551,0:-408.636,-38.5318,0,-408.636,-38.5318,-408.636	1/1:239:0,239,0:0:0:239,0:8418,0:-754.027,-71.9462,0,-754.027,-71.9462,-754.027	1/2:148:0,100,48:0:0:100,48:3557,1724:-429.182,-139.586,-109.483,-289.952,0,-275.502	1/2:158:0,105,53:0:0:105,53:3711,1896:-455.467,-154.944,-123.336,-300.879,0,-284.924	1/2:277:0,140,135:0:0:140,135:4887,4841:-791.111,-394.326,-352.182,-396.842,0,-356.203	1/1:19:0,19,0:0:0:19,0:680,0:-61.5018,-5.71957,0,-61.5018,-5.71957,-61.5018	1/1:181:0,181,0:0:0:181,0:6433,0:-577.48,-54.4864,0,-577.48,-54.4864,-577.48	1/2:49:0,33,16:0:0:33,16:1163,572:-140.755,-46.9937,-37.0597,-94.116,0,-89.2995	1/2:31:0,14,17:0:0:14,17:504,612:-91.3839,-50.2959,-46.0815,-41.4477,0,-36.3302	1/2:130:0,60,68:0:0:60,68:2091,2440:-367.596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chr04	2800647	.	CCGCC	TGGCT,CCGCT	168381	PASS	AB=0.624348,0.368116;ABP=466.361,524.227;AC=145,43;AF=0.771277,0.228723;AN=188;AO=6523,1274;CIGAR=2X2M1X,4M1X;DP=7856;DPB=7855.8;DPRA=0,0.982837;EPP=13830.8,2769.47;EPPR=7.35324;GTI=3;LEN=5,1;MEANALT=2.05319,2.57447;MQM=59.4188,59.9749;MQMR=60;NS=94;NUMALT=2;ODDS=0.467957;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=230240,45591;QR=72;RO=2;RPL=39,0;RPP=13830.8,2769.47;RPPR=7.35324;RPR=6484,1274;RUN=1,1;SAF=6523,1274;SAP=14167.5,2769.47;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:56:0,38,17:0:0:38,17:1356,612:-160.528,-49.9838,-38.5447,-110.591,0,-105.473	1/1:51:0,51,0:0:0:51,0:1815,0:-163.481,-15.3525,0,-163.481,-15.3525,-163.481	1/1:186:0,185,0:0:0:185,0:6549,0:-588.893,-55.6906,0,-588.893,-55.6906,-588.893	1/1:235:0,233,1:0:0:233,1:8163,36:-733.95,-70.14,0,-731.012,-67.2026,-730.711	1/1:88:0,87,0:0:0:87,0:3083,0:-277.341,-26.1896,0,-277.341,-26.1896,-277.341	1/1:39:0,38,0:0:0:38,0:1342,0:-120.806,-11.4391,0,-120.806,-11.4391,-120.806	1/2:75:0,55,18:0:0:55,18:1953,644:-211.71,-52.5799,-36.0232,-159.194,0,-153.775	1/1:142:0,140,1:0:0:140,1:4969,36:-446.841,-42.1442,0,-443.903,-39.2068,-443.602	1/2:76:0,38,38:0:0:38,38:1338,1352:-219.431,-110.541,-99.1021,-109.243,0,-97.8041	1/1:90:0,90,0:0:0:90,0:3184,0:-286.137,-27.0927,0,-286.137,-27.0927,-286.137	1/1:32:0,32,0:0:0:32,0:1142,0:-102.999,-9.63296,0,-102.999,-9.63296,-102.999	1/1:87:0,87,0:0:0:87,0:3074,0:-276.647,-26.1896,0,-276.647,-26.1896,-276.647	1/2:43:0,24,19:0:0:24,19:835,684:-124.047,-56.1708,-48.946,-68.231,0,-62.5115	1/1:53:0,49,0:0:0:49,0:1718,0:-154.575,-14.7505,0,-154.575,-14.7505,-154.575	1/2:45:0,26,19:0:0:26,19:934,684:-132.346,-56.1708,-48.344,-76.535,0,-70.8155	1/2:28:0,12,16:0:0:12,16:427,572:-81.7906,-46.9969,-43.3846,-35.15,0,-30.3336	1/1:30:0,30,0:0:0:30,0:1035,0:-93.4521,-9.0309,0,-93.4521,-9.0309,-93.4521	1/1:21:0,21,0:0:0:21,0:753,0:-68.0438,-6.32163,0,-68.0438,-6.32163,-68.0438	1/2:19:0,10,9:0:0:10,9:357,324:-55.9001,-26.7966,-23.7863,-29.4619,0,-26.7526	1/2:93:0,60,33:0:0:60,33:2100,1188:-268.121,-97.2946,-79.2328,-171.182,0,-161.248	1/2:81:0,63,18:0:0:63,18:2208,635:-231.622,-52.0584,-33.0935,-179.916,0,-174.497	1/2:166:0,67,98:0:0:67,98:2358,3520:-479.178,-287.276,-267.107,-192.024,0,-162.523	1/2:91:0,58,33:0:0:58,33:2051,1175:-263.123,-96.123,-78.6632,-167.355,0,-157.421	1/1:52:0,50,1:0:0:50,1:1751,36:-157.512,-15.0515,0,-154.574,-12.1141,-154.273	1/2:92:0,73,19:0:0:73,19:2576,672:-264.75,-55.0854,-33.1102,-210.018,0,-204.298	1/2:251:0,163,87:0:0:163,87:5764,3110:-723.009,-253.577,-204.509,-469.429,0,-443.24	1/2:152:0,89,61:0:0:89,61:3137,2188:-433.882,-178.522,-151.73,-255.414,0,-237.052	1/1:14:0,14,0:0:0:14,0:497,0:-44.8736,-4.21442,0,-44.8736,-4.21442,-44.8736	1/2:241:0,127,113:0:0:127,113:4502,4040:-696.161,-329.405,-291.174,-366.752,0,-332.736	1/2:109:0,72,36:0:0:72,36:2525,1288:-310.456,-105.027,-83.3526,-205.424,0,-194.587	1/1:126:0,126,0:0:0:126,0:4445,0:-400.045,-37.9298,0,-400.045,-37.9298,-400.045	1/2:7:0,2,5:0:0:2,5:63,180:-20.0997,-15.0469,-14.4449,-5.38048,0,-3.87533	1/2:21:0,12,9:0:0:12,9:429,324:-61.7751,-26.7966,-23.1842,-35.3373,0,-32.628	1/1:6:0,6,0:0:0:6,0:209,0:-19.1501,-1.80618,0,-19.1501,-1.80618,-19.1501	1/1:20:0,20,0:0:0:20,0:704,0:-63.4721,-6.0206,0,-63.4721,-6.0206,-63.4721	1/2:18:0,7,11:0:0:7,11:246,392:-52.3122,-32.3087,-30.2015,-20.3565,0,-17.0452	1/1:132:0,132,0:0:0:132,0:4669,0:-420.292,-39.736,0,-420.292,-39.736,-420.292	1/1:187:0,186,0:0:0:186,0:6540,0:-588.024,-55.9916,0,-588.024,-55.9916,-588.024	1/1:22:0,22,0:0:0:22,0:768,0:-69.3386,-6.62266,0,-69.3386,-6.62266,-69.3386	1/2:5:0,1,4:0:0:1,4:30,144:-14.4809,-12.1095,-11.8085,-2.68203,0,-1.47791	1/2:114:0,75,39:0:0:75,39:2668,1383:-330.454,-113.023,-90.446,-217.786,0,-206.046	1/1:20:0,20,0:0:0:20,0:717,0:-64.8582,-6.0206,0,-64.8582,-6.0206,-64.8582	1/2:190:0,132,58:0:0:132,58:4659,2073:-548.739,-169.379,-129.643,-379.716,0,-362.256	1/2:24:0,15,9:0:0:15,9:534,318:-69.7759,-26.2514,-21.736,-43.8787,0,-41.1694	1/1:35:0,35,0:0:0:35,0:1249,0:-112.69,-10.5361,0,-112.69,-10.5361,-112.69	1/2:88:0,58,29:0:0:58,29:2043,1015:-248.936,-82.6675,-65.2077,-166.356,0,-157.626	1/1:164:2,158,0:2:72:158,0:5601,0:-497.163,-41.6808,0,-497.765,-47.5627,-503.64	1/2:110:0,74,35:0:0:74,35:2638,1244:-316.425,-101.398,-79.1218,-215.052,0,-204.515	1/1:118:0,116,0:0:0:116,0:4094,0:-368.376,-34.9195,0,-368.376,-34.9195,-368.376	1/2:114:0,85,29:0:0:85,29:2991,1036:-328.299,-84.824,-59.2365,-243.831,0,-235.101	1/1:151:0,148,0:0:0:148,0:5214,0:-469.073,-44.5524,0,-469.073,-44.5524,-469.073	1/2:9:0,5,3:0:0:5,3:177,108:-23.2272,-8.81263,-7.30748,-14.4133,0,-13.5102	1/2:113:0,83,29:0:0:83,29:2949,1044:-325.331,-85.187,-60.2015,-240.145,0,-231.415	1/2:68:0,40,26:0:0:40,26:1417,932:-191.428,-76.0171,-63.9759,-115.413,0,-107.586	1/1:23:0,23,0:0:0:23,0:818,0:-73.9417,-6.92369,0,-73.9417,-6.92369,-73.9417	1/1:171:0,171,0:0:0:171,0:6026,0:-542.232,-51.4761,0,-542.232,-51.4761,-542.232	1/1:47:0,47,0:0:0:47,0:1643,0:-1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chr04	2800678	.	A	T	19117.2	PASS	AB=0.388288;ABP=363.968;AC=43;AF=0.228723;AN=188;AO=1300;CIGAR=1X;DP=7477;DPB=7477;DPRA=1.09059;EPP=2825.92;EPPR=13405.3;GTI=2;LEN=1;MEANALT=1.02041;MQM=59.9423;MQMR=59.4875;NS=94;NUMALT=1;ODDS=2.10656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46492;QR=217363;RO=6172;RPL=1300;RPP=2825.92;RPPR=13405.3;RPR=0;RUN=1;SAF=1300;SAP=2825.92;SAR=0;SRF=6172;SRP=13405.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:38,17:38:1368:17:608:-38.4954,0,-106.847	0/0:49:48,0:48:1705:0:0:0,-14.4494,-153.005	0/0:169:167,2:167:5858:2:72:0,-44.0744,-520.479	0/0:223:222,1:222:7876:1:36:0,-63.5314,-704.09	0/0:82:82,0:82:2902:0:0:0,-24.6845,-261.388	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.344	0/1:72:54,18:54:1906:18:642:-36.4356,0,-150.133	0/0:137:136,1:136:4777:1:36:0,-37.6428,-426.304	0/1:73:36,37:36:1246:37:1319:-97.036,0,-90.4264	0/0:86:86,0:86:3035:0:0:0,-25.8886,-271.991	0/0:28:27,0:27:929:0:0:0,-8.12781,-83.5245	0/0:81:81,0:81:2874:0:0:0,-24.3834,-258.472	0/1:44:25,19:25:884:19:684:-48.645,0,-66.624	0/0:50:50,0:50:1750:0:0:0,-15.0515,-157.746	0/1:42:24,18:24:860:18:648:-46.0086,0,-65.0601	0/1:28:12,16:12:424:16:576:-43.7461,0,-30.0604	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3516	0/0:20:20,0:20:667:0:0:0,-6.0206,-60.2857	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:94:60,34:60:2140:34:1216:-81.4497,0,-164.531	0/1:77:59,18:59:2104:18:648:-35.4726,0,-166.426	0/1:163:62,101:62:2167:101:3606:-275.677,0,-146.135	0/1:89:53,34:53:1858:34:1194:-81.2144,0,-140.933	0/0:50:49,1:49:1737:1:32:0,-11.8522,-153.396	0/1:87:70,17:70:2474:17:612:-29.2238,0,-196.536	0/1:243:156,87:156:5504:87:3120:-207.874,0,-422.271	0/1:147:84,63:84:2989:63:2239:-157.522,0,-224.931	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.7831	0/1:238:122,116:122:4306:116:4158:-302.72,0,-316.06	0/1:102:65,37:65:2290:37:1328:-89.1172,0,-175.614	0/0:122:122,0:122:4326:0:0:0,-36.7257,-389.384	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:16:16,0:16:508:0:0:0,-4.81648,-45.8667	0/1:17:6,11:6:197:11:388:-30.1393,0,-12.9338	0/0:130:129,0:129:4496:0:0:0,-38.8329,-404.351	0/0:173:173,0:173:6072:0:0:0,-52.0782,-546.535	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1163	0/1:5:1,4:1:27:4:144:-11.8085,0,-1.18629	0/1:108:70,38:70:2451:38:1363:-90.4547,0,-188.322	0/0:20:20,0:20:686:0:0:0,-6.0206,-62.0557	0/1:181:120,61:120:4205:61:2168:-140.899,0,-324.122	0/1:22:15,7:15:532:7:248:-16.0415,0,-41.5904	0/0:31:31,0:31:1062:0:0:0,-9.33193,-95.8644	0/1:87:55,32:55:1949:32:1152:-77.8005,0,-149.485	0/0:147:147,0:147:5104:0:0:0,-44.2514,-459.317	0/1:103:68,35:68:2402:35:1243:-81.1684,0,-185.417	0/0:115:115,0:115:4092:0:0:0,-34.6184,-366.703	0/1:111:81,30:81:2832:30:1072:-63.3781,0,-221.695	0/0:143:143,0:143:5067:0:0:0,-43.0473,-456.055	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0766	0/1:110:80,30:80:2849:30:1071:-63.5883,0,-223.469	0/1:63:36,27:36:1292:27:968:-68.4725,0,-97.6133	0/0:22:22,0:22:750:0:0:0,-6.62266,-67.8124	0/0:159:159,0:159:5579:0:0:0,-47.8638,-501.976	0/0:43:43,0:43:1503:0:0:0,-12.9443,-135.466	0/0:5:5,0:5:161:0:0:0,-1.50515,-14.8066	0/1:25:20,5:20:720:5:180:-9.02631,0,-57.603	0/0:100:100,0:100:3558:0:0:0,-30.103,-320.115	0/1:76:46,30:46:1633:30:1076:-74.2746,0,-124.351	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0196	0/0:183:183,0:183:6351:0:0:0,-55.0885,-571.658	0/1:145:98,47:98:3459:47:1675:-107.387,0,-267.793	0/1:47:28,19:28:992:19:680:-47.3808,0,-75.2997	0/0:110:110,0:110:3867:0:0:0,-33.1133,-347.942	0/1:148:89,59:89:3150:59:2120:-146.511,0,-239.137	0/1:70:39,31:39:1355:31:1116:-79.6796,0,-101.161	0/0:14:13,1:13:441:1:32:0,-1.01511,-36.7738	0/0:59:59,0:59:2074:0:0:0,-17.7608,-186.799	0/0:29:29,0:29:1000:0:0:0,-8.72987,-90.3048	0/1:19:14,5:14:481:5:180:-10.8325,0,-37.8909	0/0:165:165,0:165:5852:0:0:0,-49.6699,-526.444	0/1:66:47,19:47:1650:19:684:-42.0223,0,-128.706	0/0:128:128,0:128:4543:0:0:0,-38.5318,-408.917	0/0:127:127,0:127:4511:0:0:0,-38.2308,-406.064	0/1:146:90,56:90:3118:56:2003:-136.592,0,-236.817	0/1:57:27,30:27:941:30:1067:-79.1825,0,-67.8182	0/1:19:11,8:11:392:8:288:-20.5478,0,-28.9554	0/0:130:130,0:130:4580:0:0:0,-39.1339,-412.289	0/0:136:135,1:135:4734:1:36:0,-37.3613,-422.071	0/0:206:206,0:206:7212:0:0:0,-62.0122,-649.114	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.673	0/0:55:55,0:55:1945:0:0:0,-16.5566,-175.32	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.966	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.738	0/1:20:12,8:12:420:8:288:-20.2468,0,-32.1125	0/0:43:43,0:43:1521:0:0:0,-12.9443,-136.758	0/0:43:43,0:43:1494:0:0:0,-12.9443,-134.749	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:49:26,23:26:916:23:828:-60.0936,0,-68.006	0/1:28:9,19:9:320:19:684:-53.4615,0,-20.7092	0/0:162:162,0:162:5755:0:0:0,-48.7669,-518.032	0/0:68:68,0:68:2364:0:0:0,-20.47,-212.975
chr04	2814285	.	ACT	AAT,AA	261845	PASS	AB=0.421545,0.577565;ABP=243.223,237.802;AC=141,45;AF=0.758065,0.241935;AN=186;AO=6894,2652;CIGAR=1M1X1M,1M1D1X;DP=9570;DPB=8686;DPRA=7.41925,1.16363;EPP=14869.1,5735.73;EPPR=0;GTI=3;LEN=1,2;MEANALT=1.70652,2.04255;MQM=59.1407,47.029;MQMR=0;NS=93;NUMALT=2;ODDS=0.325591;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=246079,94861;QR=0;RO=0;RPL=3304,1362;RPP=28.7744,7.25499;RPPR=0;RPR=3590,1290;RUN=1,1;SAF=3314,1365;SAP=25.297,7.99191;SAR=3580,1287;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:0,8,46:0:0:8,46:282,1656:-153.131,-130.177,-127.769,-23.305,0,-9.45765	1/1:88:0,88,0:0:0:88,0:3141,0:-282.789,-26.4906,0,-282.789,-26.4906,-282.789	1/1:199:0,199,0:0:0:199,0:7093,0:-638.057,-59.905,0,-638.057,-59.905,-638.057	1/1:194:0,194,0:0:0:194,0:6927,0:-623.466,-58.3998,0,-623.466,-58.3998,-623.466	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:8:0,8,0:0:0:8,0:288,0:-26.2656,-2.40824,0,-26.2656,-2.40824,-26.2656	1/2:131:0,51,80:0:0:51,80:1832,2872:-379.76,-230.35,-214.998,-149.766,0,-125.684	1/1:129:0,127,2:0:0:127,2:4500,72:-404.731,-38.2308,0,-399.054,-32.2049,-398.452	1/2:146:0,59,87:0:0:59,87:2095,3117:-413.315,-242.828,-225.068,-170.836,0,-144.647	1/1:124:0,124,0:0:0:124,0:4418,0:-397.776,-37.3277,0,-397.776,-37.3277,-397.776	1/1:81:0,81,0:0:0:81,0:2874,0:-258.482,-24.3834,0,-258.482,-24.3834,-258.482	1/1:189:0,188,1:0:0:188,1:6746,36:-606.272,-56.5936,0,-603.343,-53.3054,-603.042	1/2:173:0,94,79:0:0:94,79:3369,2817:-499.373,-224.754,-196.457,-274.972,0,-251.191	1/1:116:0,116,0:0:0:116,0:4158,0:-373.981,-34.9195,0,-373.981,-34.9195,-373.981	1/2:138:0,77,61:0:0:77,61:2760,2184:-399.989,-174.91,-151.73,-225.434,0,-207.071	1/2:113:0,62,51:0:0:62,51:2211,1828:-323.422,-143.271,-124.607,-180.501,0,-165.149	1/1:88:0,88,0:0:0:88,0:3164,0:-284.856,-26.4906,0,-284.856,-26.4906,-284.856	1/1:89:0,89,0:0:0:89,0:3158,0:-284.237,-26.7917,0,-284.237,-26.7917,-284.237	1/2:44:0,20,24:0:0:20,24:716,864:-125.056,-66.6764,-60.6558,-58.7298,0,-51.5051	1/2:137:0,51,86:0:0:51,86:1824,3084:-394.553,-245.851,-230.499,-149.057,0,-123.168	1/2:239:0,111,128:0:0:111,128:3940,4583:-686.202,-365.184,-331.77,-321.37,0,-282.838	2/2:41:0,3,38:0:0:3,38:104,1364:-120.353,-111.901,-110.997,-11.4391,-2.63943,0	1/2:148:0,49,99:0:0:49,99:1741,3512:-424.368,-282.616,-267.866,-142.105,0,-112.303	1/2:78:0,58,20:0:0:58,20:2068,720:-226.425,-57.8675,-40.4077,-168.912,0,-162.891	1/2:73:0,15,58:0:0:15,58:501,2084:-207.037,-166.489,-161.974,-40.8851,0,-23.4253	1/2:203:0,87,116:0:0:87,116:3087,4111:-581.276,-330.174,-303.985,-251.454,0,-216.534	1/2:193:0,106,87:0:0:106,87:3785,3113:-555.997,-247.615,-215.705,-308.735,0,-282.545	1/1:64:0,64,0:0:0:64,0:2287,0:-206.064,-19.2659,0,-206.064,-19.2659,-206.064	1/2:238:0,105,133:0:0:105,133:3760,4776:-690.42,-383.848,-352.24,-306.927,0,-266.89	1/2:110:0,43,67:0:0:43,67:1517,2392:-310.968,-187.458,-174.514,-123.859,0,-103.69	1/1:140:0,140,0:0:0:140,0:4994,0:-448.526,-42.1442,0,-448.526,-42.1442,-448.526	1/2:4:0,1,3:0:0:1,3:36,108:-11.9043,-8.96593,-8.6649,-3.29624,0,-2.39315	2/2:14:0,0,14:0:0:0,14:0,504:-45.0043,-45.0043,-45.0043,-4.21442,-4.21442,0	1/1:5:0,5,0:0:0:5,0:180,0:-16.5502,-1.50515,0,-16.5502,-1.50515,-16.5502	1/1:9:0,9,0:0:0:9,0:324,0:-29.4601,-2.70927,0,-29.4601,-2.70927,-29.4601	1/2:8:0,4,4:0:0:4,4:144,144:-23.4465,-11.703,-10.4989,-12.0977,0,-10.8935	1/1:259:0,258,0:0:0:258,0:9232,0:-830.502,-77.6657,0,-830.502,-77.6657,-830.502	1/1:44:0,44,0:0:0:44,0:1571,0:-141.674,-13.2453,0,-141.674,-13.2453,-141.674	1/1:61:0,61,0:0:0:61,0:2183,0:-196.54,-18.3628,0,-196.54,-18.3628,-196.54	.:.:.:.:.:.:.:.	1/2:130:0,36,94:0:0:36,94:1292,3349:-370.224,-264.891,-254.054,-105.688,0,-77.3917	1/1:40:0,40,0:0:0:40,0:1432,0:-129.093,-12.0412,0,-129.093,-12.0412,-129.093	1/2:168:0,34,131:0:0:34,131:1220,4695:-470.292,-370.779,-360.544,-99.5099,0,-60.0749	1/2:86:0,55,31:0:0:55,31:1976,1112:-249.971,-88.7997,-72.243,-161.525,0,-152.193	1/1:105:0,105,0:0:0:105,0:3720,0:-334.862,-31.6082,0,-334.862,-31.6082,-334.862	1/2:76:0,27,49:0:0:27,49:972,1756:-221.773,-142.461,-134.333,-79.6701,0,-64.9196	1/1:53:0,52,0:0:0:52,0:1860,0:-167.263,-15.6536,0,-167.263,-15.6536,-167.263	1/2:137:0,49,88:0:0:49,88:1729,3153:-392.25,-251.769,-237.018,-140.833,0,-114.343	1/1:86:0,85,0:0:0:85,0:3029,0:-272.519,-25.5876,0,-272.519,-25.5876,-272.519	1/2:162:0,53,109:0:0:53,109:1881,3888:-462.201,-308.955,-293,-153.598,0,-120.786	1/1:49:0,49,0:0:0:49,0:1755,0:-157.95,-14.7505,0,-157.95,-14.7505,-157.95	1/2:13:0,10,3:0:0:10,3:360,108:-38.5392,-9.16481,-6.15451,-29.734,0,-28.8309	1/2:111:0,38,73:0:0:38,73:1360,2620:-316.126,-205.242,-193.802,-111.237,0,-89.2622	1/2:64:0,30,34:0:0:30,34:1076,1209:-185.537,-97.9301,-88.8992,-87.9623,0,-77.7273	1/1:7:0,7,0:0:0:7,0:252,0:-22.9914,-2.10721,0,-22.9914,-2.10721,-22.9914	1/1:94:0,93,0:0:0:93,0:3304,0:-297.095,-27.9958,0,-297.095,-27.9958,-297.095	1/1:24:0,24,0:0:0:24,0:864,0:-77.7113,-7.22472,0,-77.7113,-7.22472,-77.7113	1/1:5:0,5,0: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chr04	2873958	.	TGAA	CGAT,TGAT	213025	PASS	AB=0.389939,0.606205;ABP=576.117,536.669;AC=144,44;AF=0.765957,0.234043;AN=188;AO=6751,3312;CIGAR=1X2M1X,3M1X;DP=10095;DPB=10094.8;DPRA=0,1.61186;EPP=14662.6,7194.93;EPPR=5.18177;GTI=7;LEN=4,1;MEANALT=1.84043,2.35294;MQM=59.9762,59.9897;MQMR=60;NS=94;NUMALT=2;ODDS=0.42147;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=239255,118225;QR=36;RO=1;RPL=6751,3312;RPP=14662.6,7194.93;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=14662.6,7194.93;SAR=6751,3312;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:57:0,23,34:0:0:23,34:812,1224:-166.353,-100.232,-93.3083,-66.4768,0,-56.2418	1/1:175:0,175,0:0:0:175,0:6197,0:-557.836,-52.6803,0,-557.836,-52.6803,-557.836	1/1:175:0,174,0:0:0:174,0:6189,0:-556.752,-52.3792,0,-556.752,-52.3792,-556.752	1/1:183:0,181,0:0:0:181,0:6433,0:-578.731,-54.4864,0,-578.731,-54.4864,-578.731	1/1:99:0,99,0:0:0:99,0:3512,0:-316.292,-29.802,0,-316.292,-29.802,-316.292	1/1:66:0,65,1:0:0:65,1:2316,36:-208.341,-19.567,0,-205.404,-16.2697,-205.103	1/2:137:0,55,81:0:0:55,81:1943,2904:-395.085,-236.852,-220.296,-158.228,0,-133.845	1/1:200:0,199,1:0:0:199,1:7048,36:-634.028,-59.905,0,-631.09,-56.6077,-630.789	1/2:82:0,33,49:0:0:33,49:1170,1760:-239.251,-143.933,-133.999,-95.6734,0,-80.9229	1/1:110:0,109,0:0:0:109,0:3864,0:-347.638,-32.8123,0,-347.638,-32.8123,-347.638	1/1:23:0,23,0:0:0:23,0:813,0:-73.4907,-6.92369,0,-73.4907,-6.92369,-73.4907	1/1:37:0,37,0:0:0:37,0:1314,0:-118.561,-11.1381,0,-118.561,-11.1381,-118.561	1/2:38:0,16,22:0:0:16,22:575,788:-111.532,-64.6221,-59.8057,-47.2682,0,-40.6455	1/1:29:0,29,0:0:0:29,0:1030,0:-93.0132,-8.72987,0,-93.0132,-8.72987,-93.0132	1/2:43:0,16,27:0:0:16,27:575,968:-126.219,-79.3096,-74.4931,-47.2682,0,-39.1404	1/2:35:0,19,16:0:0:19,16:683,572:-102.719,-46.9969,-41.2774,-56.0806,0,-51.2641	1/1:29:0,29,0:0:0:29,0:1021,0:-92.2023,-8.72987,0,-92.2023,-8.72987,-92.2023	1/1:27:0,27,0:0:0:27,0:967,0:-87.3476,-8.12781,0,-87.3476,-8.12781,-87.3476	1/2:21:0,7,14:0:0:7,14:248,504:-61.6846,-41.4837,-39.3765,-20.557,0,-16.3426	1/2:316:0,128,188:0:0:128,188:4529,6669:-912.589,-543.692,-505.16,-369.251,0,-312.658	1/2:153:1,42,109:1:36:42,109:1494,3886:-434.494,-313.896,-304.19,-118.027,0,-88.1527	1/2:284:0,78,206:0:0:78,206:2781,7378:-828.745,-602.051,-578.571,-227.051,0,-165.039	1/2:91:0,41,48:0:0:41,48:1465,1686:-256.736,-137.285,-124.943,-119.516,0,-105.066	1/1:155:0,151,4:0:0:151,4:5359,144:-482.087,-45.4555,0,-470.337,-33.346,-469.133	1/2:118:0,63,55:0:0:63,55:2239,1967:-343.199,-160.748,-141.783,-182.808,0,-166.251	1/2:391:0,119,270:0:0:119,270:4215,9655:-1130.69,-787.332,-751.509,-343.424,0,-262.146	1/2:233:0,97,136:0:0:97,136:3422,4843:-673.706,-395.081,-365.881,-278.979,0,-238.039	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:476:0,202,273:0:0:202,273:7128,9721:-1372.7,-792.296,-731.488,-580.397,0,-498.215	1/2:80:0,37,43:0:0:37,43:1297,1518:-229.505,-123.965,-112.827,-105.892,0,-92.9477	1/1:112:0,111,0:0:0:111,0:3915,0:-352.185,-33.4143,0,-352.185,-33.4143,-352.185	1/2:17:0,7,10:0:0:7,10:248,360:-49.9345,-29.734,-27.6268,-20.557,0,-17.5467	1/2:32:0,11,21:0:0:11,21:396,756:-94.3572,-62.0456,-58.7343,-32.6714,0,-26.3498	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:12:0,12,0:0:0:12,0:431,0:-39.1307,-3.61236,0,-39.1307,-3.61236,-39.1307	1/2:16:0,2,14:0:0:2,14:66,504:-46.8159,-41.4837,-40.8816,-5.66589,0,-1.45147	1/1:136:0,135,0:0:0:135,0:4795,0:-431.123,-40.6391,0,-431.123,-40.6391,-431.123	1/1:219:0,219,0:0:0:219,0:7730,0:-695.732,-65.9256,0,-695.732,-65.9256,-695.732	1/1:20:0,20,0:0:0:20,0:701,0:-63.4115,-6.0206,0,-63.4115,-6.0206,-63.4115	1/2:10:0,1,9:0:0:1,9:36,324:-29.734,-26.7966,-26.4956,-3.29724,0,-0.587975	1/2:154:0,55,99:0:0:55,99:1961,3541:-448.947,-289.095,-272.539,-160.209,0,-130.407	1/1:32:0,32,0:0:0:32,0:1128,0:-101.827,-9.63296,0,-101.827,-9.63296,-101.827	1/2:210:0,73,136:0:0:73,136:2584,4828:-603.888,-393.411,-371.436,-210.511,0,-169.57	1/2:47:0,18,29:0:0:18,29:635,1025:-135.537,-83.8308,-78.4123,-52.059,0,-43.3291	1/1:30:0,30,0:0:0:30,0:1069,0:-96.5222,-9.0309,0,-96.5222,-9.0309,-96.5222	1/2:188:0,94,94:0:0:94,94:3296,3327:-539.558,-271.345,-243.048,-268.566,0,-240.269	1/1:169:0,169,0:0:0:169,0:6013,0:-541.279,-50.8741,0,-541.279,-50.8741,-541.279	1/2:318:0,122,195:0:0:122,195:4309,6952:-917.592,-566.681,-529.955,-350.906,0,-292.205	1/1:169:0,169,0:0:0:169,0:6017,0:-541.638,-50.8741,0,-541.638,-50.8741,-541.638	1/2:156:0,57,99:0:0:57,99:2028,3560:-456.081,-290.804,-273.646,-165.634,0,-135.832	1/1:245:0,244,1:0:0:244,1:8655,36:-778.592,-73.4513,0,-775.655,-70.1541,-775.354	1/2:13:0,3,10:0:0:3,10:108,360:-38.5463,-29.734,-28.8309,-9.17208,0,-6.16178	1/2:210:0,94,115:0:0:94,115:3347,4106:-607.619,-334.823,-306.526,-272.871,0,-238.253	1/2:20:0,14,6:0:0:14,6:502,216:-58.9278,-17.9843,-13.7699,-41.3029,0,-39.4967	1/1:16:0,16,0:0:0:16,0:548,0:-49.6425,-4.81648,0,-49.6425,-4.81648,-49.6425	1/1:115:0,115,0:0:0:115,0:4095,0:-368.738,-34.6185,0,-368.7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chr04	2881115	.	C	A	20620.1	PASS	AB=0.317427;ABP=1501.6;AC=41;AF=0.218085;AN=188;AO=1662;CIGAR=1X;DP=13531;DPB=13531;DPRA=0.899189;EPP=3612;EPPR=14868;GTI=7;LEN=1;MEANALT=1.06522;MQM=59.9669;MQMR=59.8865;NS=94;NUMALT=1;ODDS=1.04098;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59124;QR=424056;RO=11864;RPL=1662;RPP=3612;RPPR=8189.84;RPR=0;RUN=1;SAF=1662;SAP=3612;SAR=0;SRF=10702;SRP=16660.9;SRR=1162;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:20,9:20:712:9:324:-20.776,0,-55.6768	0/0:200:200,0:200:7157:0:0:0,-60.206,-644.185	0/0:259:259,0:259:9251:0:0:0,-77.9668,-832.543	0/0:332:332,0:332:11856:0:0:0,-99.942,-1066.12	0/0:92:92,0:92:3266:0:0:0,-27.6948,-294.161	0/0:96:96,0:96:3427:0:0:0,-28.8989,-308.643	0/1:143:88,55:88:3145:55:1972:-134.706,0,-239.884	0/0:380:380,0:380:13631:0:0:0,-114.391,-1225.79	0/1:74:64,9:64:2284:9:324:-7.1646,0,-183.487	0/0:161:161,0:161:5768:0:0:0,-48.4658,-519.23	0/0:121:121,0:121:4271:0:0:0,-36.4246,-384.53	0/0:167:167,0:167:5953:0:0:0,-50.272,-535.683	0/1:116:82,34:82:2932:34:1207:-74.0158,0,-229.187	0/0:203:201,2:201:7148:2:72:0,-54.2724,-636.536	0/1:102:69,33:69:2472:33:1171:-74.9916,0,-192.029	0/1:86:64,22:64:2287:22:788:-45.3562,0,-179.884	0/0:168:167,0:167:5951:0:0:0,-50.272,-535.336	0/0:112:112,0:112:3984:0:0:0,-33.7154,-358.739	0/1:64:50,14:50:1788:14:504:-26.4322,0,-141.934	0/1:178:133,45:133:4764:45:1603:-90.9761,0,-375.328	0/0:107:99,8:99:3536:8:284:0,-6.30685,-292.546	0/1:127:58,69:58:2068:69:2480:-185.222,0,-148.159	0/1:90:50,40:50:1796:40:1432:-102.076,0,-134.801	0/0:106:99,7:99:3527:7:243:0,-9.7017,-295.433	0/1:60:39,21:39:1392:21:744:-49.2225,0,-107.513	0/1:399:297,102:297:10627:102:3639:-207.541,0,-836.182	0/1:241:188,53:188:6743:53:1892:-98.01,0,-534.389	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.464	0/1:288:214,74:214:7669:74:2627:-149.981,0,-603.525	0/1:168:132,36:132:4748:36:1271:-64.1191,0,-376.902	0/0:229:229,0:229:8208:0:0:0,-68.9359,-738.575	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:372:371,1:371:13248:1:36:0,-108.385,-1188.43	0/0:305:305,0:305:10931:0:0:0,-91.8141,-983.685	0/0:123:122,0:122:4314:0:0:0,-36.7257,-388.05	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1841	0/1:145:107,38:107:3832:38:1360:-79.0512,0,-301.42	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.011	0/1:135:101,34:101:3594:34:1216:-69.1075,0,-283.028	0/1:120:92,28:92:3287:28:1000:-54.1918,0,-259.767	0/0:145:145,0:145:5146:0:0:0,-43.6493,-463.128	0/1:95:63,32:63:2260:32:1136:-73.951,0,-175.065	0/0:223:223,0:223:7944:0:0:0,-67.1297,-714.927	0/1:278:166,112:166:5932:112:3929:-270.117,0,-450.303	0/0:211:211,0:211:7544:0:0:0,-63.5173,-678.369	0/1:198:133,65:133:4780:65:2302:-147.837,0,-370.751	0/0:175:175,0:175:6268:0:0:0,-52.6802,-564.211	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:249:116,133:116:4148:133:4704:-348.567,0,-298.529	0/1:45:32,13:32:1144:13:464:-28.5405,0,-89.7232	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:211:211,0:211:7580:0:0:0,-63.5173,-681.9	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5887	0/0:156:156,0:156:5573:0:0:0,-46.9607,-501.692	0/1:228:120,108:120:4295:108:3860:-278.961,0,-318.085	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:337:337,0:337:12092:0:0:0,-101.447,-1087.84	0/1:214:153,61:153:5476:61:2176:-131.686,0,-428.475	0/1:119:90,29:90:3224:29:1036:-57.7314,0,-254.178	0/0:170:170,0:170:6100:0:0:0,-51.1751,-549.087	0/1:198:146,52:146:5205:52:1838:-106.093,0,-408.982	0/1:69:41,28:41:1472:28:981:-67.83,0,-112.005	0/0:63:63,0:63:2253:0:0:0,-18.9649,-203.028	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.05	0/0:181:181,0:181:6457:0:0:0,-54.4864,-581.202	0/1:38:23,15:23:824:15:532:-36.7739,0,-63.0442	0/0:128:128,0:128:4588:0:0:0,-38.5318,-413.084	0/1:67:56,11:56:2008:11:396:-15.8137,0,-160.824	0/0:239:239,0:239:8522:0:0:0,-71.9462,-766.976	0/0:299:297,1:297:10640:1:36:0,-86.4685,-953.906	0/1:163:99,64:99:3556:64:2279:-156.304,0,-271.179	0/1:164:119,44:119:4246:44:1572:-92.383,0,-332.929	0/1:12:10,2:10:360:2:68:-2.84535,0,-29.1319	0/0:160:160,0:160:5736:0:0:0,-48.1648,-516.323	0/0:166:166,0:166:5959:0:0:0,-49.971,-536.407	0/0:301:301,0:301:10784:0:0:0,-90.61,-970.431	0/0:153:153,0:153:5441:0:0:0,-46.0576,-489.733	0/0:135:135,0:135:4831:0:0:0,-40.639,-434.941	0/1:128:97,31:97:3456:31:1112:-61.8595,0,-272.72	0/0:304:304,0:304:10837:0:0:0,-91.5131,-974.983	0/1:56:40,16:40:1428:16:572:-34.9557,0,-111.956	0/0:166:166,0:166:5894:0:0:0,-49.971,-530.537	0/0:117:117,0:117:4165:0:0:0,-35.2205,-374.955	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.269	0/1:148:96,52:96:3444:52:1843:-121.597,0,-265.596	0/1:92:49,43:49:1756:43:1523:-109.668,0,-130.605	0/0:150:150,0:150:5356:0:0:0,-45.1545,-482.174	0/0:211:211,0:211:7496:0:0:0,-63.5173,-674.672
chr04	2883731	.	A	T	103913	PASS	AB=0.402778;ABP=251.282;AC=144;AF=0.765957;AN=188;AO=3915;CIGAR=1X;DP=5727;DPB=5727;DPRA=0;EPP=3.02417;EPPR=8.23623;GTI=4;LEN=1;MEANALT=1.02128;MQM=59.9351;MQMR=59.8906;NS=94;NUMALT=1;ODDS=0.353803;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139708;QR=64797;RO=1810;RPL=1955;RPP=3.02417;RPPR=8.23623;RPR=1960;RUN=1;SAF=0;SAP=8504.32;SAR=3915;SRF=0;SRP=3933.38;SRR=1810;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:19,38:19:676:38:1348:-104.433,0,-44.0093	1/1:42:0,42:0:0:42:1492:-134.575,-12.6433,0	1/1:78:2,76:2:72:76:2716:-237.802,-16.6436,0	1/1:119:0,119:0:0:119:4247:-382.408,-35.8226,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	0/1:46:21,25:21:752:25:896:-67.113,0,-54.1589	1/1:84:0,84:0:0:84:2973:-267.804,-25.2865,0	0/1:73:36,37:36:1292:37:1328:-97.847,0,-94.6086	1/1:50:0,50:0:0:50:1776:-160.118,-15.0515,0	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:87:0,87:0:0:87:3103:-279.497,-26.1896,0	0/1:54:27,27:27:972:27:968:-71.1817,0,-71.5423	1/1:75:0,75:0:0:75:2677:-241.153,-22.5773,0	0/1:58:32,26:32:1152:26:932:-66.7391,0,-86.5304	0/1:43:27,16:27:937:16:568:-38.5076,0,-71.6966	1/1:33:0,32:0:0:32:1148:-103.269,-9.63296,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:88:56,32:56:2016:32:1140:-76.4186,0,-155.222	0/1:81:47,34:47:1684:34:1220:-85.7234,0,-127.453	0/1:85:67,18:67:2374:18:648:-33.0643,0,-188.325	0/1:51:29,22:29:1036:22:792:-56.2531,0,-78.2014	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:100:58,42:58:2080:42:1504:-105.552,0,-157.367	0/1:175:88,87:88:3156:87:3096:-226.189,0,-230.958	0/1:218:151,67:151:5432:67:2385:-149.281,0,-423.374	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:141:90,51:90:3228:51:1820:-121.632,0,-248.296	0/1:91:58,33:58:2072:33:1188:-79.8242,0,-159.357	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	0/1:18:6,12:6:212:12:421:-32.8049,0,-14.0063	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2572	1/1:10:0,10:0:0:10:360:-32.7419,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:32:20,12:20:720:12:424:-28.8635,0,-55.4958	1/1:164:0,164:0:0:164:5879:-529.219,-49.3689,0	1/1:61:0,61:0:0:61:2157:-194.393,-18.3628,0	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	0/1:6:2,4:2:68:4:136:-10.7694,0,-4.65153	0/1:66:44,22:44:1580:22:792:-51.7377,0,-122.624	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:116:78,38:78:2795:38:1360:-87.7564,0,-216.87	0/1:54:29,25:29:1036:25:896:-64.7047,0,-77.2983	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:81:35,46:35:1256:46:1637:-123.234,0,-88.9619	1/1:66:0,66:0:0:66:2348:-211.579,-19.868,0	0/1:120:80,40:80:2863:40:1428:-92.3762,0,-221.355	1/1:61:0,61:0:0:61:2155:-194.13,-18.3628,0	0/1:45:28,17:28:1000:17:608:-41.5057,0,-76.6827	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:72:45,27:45:1612:27:972:-66.1237,0,-123.684	0/1:56:38,18:38:1368:18:648:-41.7942,0,-106.56	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:81:0,81:0:0:81:2892:-260.516,-24.3834,0	1/1:25:0,25:0:0:25:860:-77.71,-7.52575,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:24:14,10:14:504:10:345:-24.1561,0,-38.4734	1/1:89:0,89:0:0:89:3173:-285.775,-26.7917,0	0/1:104:60,44:60:2147:44:1574:-110.644,0,-162.19	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:68:0,68:0:0:68:2420:-218.057,-20.47,0	0/1:91:56,35:56:2004:35:1252:-85.5913,0,-153.154	0/1:36:13,23:13:464:23:824:-63.6462,0,-31.2604	1/1:24:0,24:0:0:24:849:-76.7278,-7.22472,0	0/1:84:55,29:55:1967:29:1036:-68.2674,0,-151.86	0/1:140:102,38:102:3636:38:1355:-80.1032,0,-285.293	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:42:0,41:0:0:41:1453:-130.704,-12.3422,0	0/1:23:10,13:10:356:13:464:-35.1738,0,-25.4576	1/1:76:0,76:0:0:76:2700:-243.244,-22.8783,0	0/1:49:28,21:28:1000:21:748:-52.8939,0,-75.5649	1/1:109:1,108:1:36:108:3855:-343.548,-29.214,0	1/1:53:0,53:0:0:53:1881:-169.567,-15.9546,0	0/1:114:68,46:68:2435:46:1636:-113.211,0,-185.087	0/1:35:18,17:18:639:17:604:-44.1474,0,-47.3022	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:24:0,24:0:0:24:856:-77.3161,-7.22472,0	1/1:128:1,127:1:36:127:4505:-402.014,-34.9336,0	1/1:55:0,55:0:0:55:1964:-177.031,-16.5567,0	1/1:44:0,44:0:0:44:1583:-142.762,-13.2453,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:105:0,105:0:0:105:3760:-338.6,-31.6082,0	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	1/1:46:0,46:0:0:46:1625:-146.537,-13.8474,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:144:81,63:81:2892:63:2264:-160.674,0,-217.15	0/1:65:43,22:43:1548:22:769:-49.9617,0,-120.046	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0
chr04	2883743	.	A	T	83618.3	PASS	AB=0.410382;ABP=216.684;AC=144;AF=0.765957;AN=188;AO=4036;CIGAR=1X;DP=5846;DPB=5846;DPRA=0;EPP=8767.07;EPPR=3931.2;GTI=3;LEN=1;MEANALT=1.01064;MQM=59.9115;MQMR=59.8966;NS=94;NUMALT=1;ODDS=0.230687;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144554;QR=64782;RO=1809;RPL=4036;RPP=8767.07;RPPR=3931.2;RPR=0;RUN=1;SAF=0;SAP=8767.07;SAR=4036;SRF=0;SRP=3931.2;SRR=1809;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:19,39:19:684:39:1404:-109.171,0,-44.4306	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:81:1,80:1:36:80:2872:-255.069,-20.7852,0	1/1:122:0,122:0:0:122:4376:-394.002,-36.7257,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:46:21,25:21:752:25:896:-67.113,0,-54.1589	1/1:85:0,85:0:0:85:3037:-273.559,-25.5876,0	0/1:75:36,39:36:1296:39:1389:-102.73,0,-94.3667	1/1:52:0,52:0:0:52:1872:-168.757,-15.6536,0	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	1/1:88:0,88:0:0:88:3141:-282.915,-26.4906,0	0/1:55:28,27:28:1008:27:968:-70.8807,0,-74.4797	1/1:76:0,75:0:0:75:2685:-241.511,-22.5773,0	0/1:60:32,28:32:1152:28:989:-71.2602,0,-85.9283	0/1:43:27,16:27:960:16:576:-39.2307,0,-73.772	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:93:58,35:58:2076:35:1241:-83.9967,0,-159.115	0/1:88:50,38:50:1792:38:1358:-96.0263,0,-135.061	0/1:84:66,18:66:2368:18:648:-33.3654,0,-188.087	0/1:52:29,23:29:1044:23:824:-58.8298,0,-78.6212	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:101:57,44:57:2048:44:1576:-111.728,0,-154.188	0/1:179:90,89:90:3205:89:3200:-234.338,0,-234.161	0/1:217:148,69:148:5293:69:2480:-158.13,0,-411.177	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:142:91,51:91:3263:51:1828:-122.044,0,-251.143	0/1:92:58,34:58:2084:34:1224:-82.7616,0,-160.135	1/1:63:0,63:0:0:63:2260:-203.66,-18.9649,0	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5582	1/1:10:0,10:0:0:10:360:-32.7419,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:31:19,12:19:684:12:424:-29.1645,0,-52.5584	1/1:165:0,165:0:0:165:5932:-533.985,-49.67,0	1/1:63:0,63:0:0:63:2264:-204.012,-18.9649,0	1/1:43:0,43:0:0:43:1544:-138.935,-12.9443,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:65:43,22:43:1529:22:792:-52.0387,0,-118.334	1/1:26:0,26:0:0:26:927:-83.7474,-7.82678,0	0/1:118:80,38:80:2867:38:1360:-87.1438,0,-222.745	0/1:54:29,25:29:1044:25:896:-64.7047,0,-78.0192	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:84:36,48:36:1296:48:1724:-130.159,0,-91.6574	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:126:80,46:80:2876:46:1626:-108.377,0,-220.719	1/1:64:0,64:0:0:64:2300:-207.175,-19.2659,0	0/1:44:27,17:27:968:17:608:-41.8067,0,-74.1057	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:76:47,29:47:1684:29:1040:-71.0361,0,-128.952	0/1:57:38,19:38:1334:19:684:-44.7316,0,-103.194	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:83:0,83:0:0:83:2982:-268.611,-24.9855,0	1/1:26:0,26:0:0:26:936:-84.5442,-7.82678,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:24:14,10:14:500:10:352:-24.7935,0,-38.1115	1/1:94:0,94:0:0:94:3350:-301.689,-28.2968,0	0/1:103:59,44:59:2120:44:1584:-111.845,0,-160.062	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	0/1:93:58,35:58:2080:35:1256:-85.3495,0,-159.388	0/1:35:12,23:12:432:23:824:-63.9473,0,-28.6851	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:84:54,30:54:1932:30:1061:-70.5128,0,-148.87	0/1:142:101,41:101:3579:41:1472:-90.0123,0,-279.56	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	1/1:78:0,78:0:0:78:2781:-250.53,-23.4803,0	0/1:49:27,22:27:963:22:777:-55.4975,0,-72.2355	1/1:116:1,115:1:36:115:4109:-366.202,-31.3212,0	1/1:54:0,54:0:0:54:1932:-174.146,-16.2556,0	0/1:116:67,49:67:2393:49:1730:-121.061,0,-180.706	0/1:36:18,18:18:648:18:639:-46.9961,0,-47.8148	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:51:0,51:0:0:51:1823:-164.351,-15.3525,0	1/1:25:0,25:0:0:25:900:-81.276,-7.52575,0	1/1:132:1,131:1:36:131:4643:-414.416,-36.1377,0	1/1:56:0,56:0:0:56:1997:-179.997,-16.8577,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:106:0,106:0:0:106:3806:-342.736,-31.9092,0	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	1/1:47:0,47:0:0:47:1682:-151.667,-14.1484,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:48:0,48:0:0:48:1728:-155.788,-14.4494,0	0/1:144:80,64:80:2872:64:2300:-163.912,0,-215.353	0/1:65:43,22:43:1548:22:777:-50.6834,0,-120.046	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0
chr04	2883750	.	T	C	31142.5	PASS	AB=0.590984;ABP=219.942;AC=44;AF=0.234043;AN=188;AO=1787;CIGAR=1X;DP=5727;DPB=5727;DPRA=1.35353;EPP=3883.43;EPPR=8549.93;GTI=4;LEN=1;MEANALT=1.0625;MQM=59.8875;MQMR=59.9276;NS=94;NUMALT=1;ODDS=0.0178851;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63702;QR=140390;RO=3936;RPL=1787;RPP=3883.43;RPPR=8549.93;RPR=0;RUN=1;SAF=0;SAP=3883.43;SAR=1787;SRF=0;SRP=8549.93;SRR=3936;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:37,18:37:1290:18:636:-41.0114,0,-99.8402	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:78:77,1:77:2745:1:36:0,-19.8821,-243.688	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.045	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:45:23,21:23:824:21:741:-53.4076,0,-60.8782	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/1:76:39,37:39:1385:37:1328:-96.944,0,-102.069	0/0:50:50,0:50:1753:0:0:0,-15.0515,-158.052	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:88:88,0:88:3129:0:0:0,-26.4906,-281.835	0/1:54:27,27:27:968:27:968:-71.1817,0,-71.1817	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.332	0/1:58:27,31:27:972:31:1116:-83.292,0,-70.3382	0/1:41:16,25:16:576:25:883:-67.4452,0,-39.8328	0/0:32:32,0:32:1125:0:0:0,-9.63296,-101.555	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/1:91:34,57:34:1220:57:2025:-155.127,0,-82.7131	0/1:82:37,45:37:1304:45:1612:-120.675,0,-92.9708	0/1:82:18,64:18:648:64:2284:-181.137,0,-33.9674	0/1:52:23,29:23:816:29:1036:-77.9004,0,-58.1082	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:101:43,58:43:1548:58:2064:-155.627,0,-109.209	0/1:172:83,89:83:2960:89:3169:-233.03,0,-214.857	0/1:219:69,149:69:2453:149:5316:-412.586,0,-155.039	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:137:50,87:50:1773:87:3097:-237.716,0,-118.606	0/1:92:35,57:35:1233:57:2040:-156.177,0,-83.5667	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.104	0/1:17:11,6:11:396:6:207:-13.8494,0,-30.8652	0/1:15:9,6:9:324:6:216:-15.2572,0,-24.9904	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3789	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:33:13,20:13:456:20:716:-54.8337,0,-31.4392	0/0:161:161,0:161:5780:0:0:0,-48.4658,-520.312	0/0:61:61,0:61:2143:0:0:0,-18.3628,-193.133	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.659	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:64:22,42:22:773:42:1504:-116.389,0,-50.6236	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:116:36,80:36:1296:80:2842:-221.097,0,-81.9892	0/1:54:25,29:25:892:29:1036:-77.2983,0,-64.3441	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:85:49,36:49:1722:36:1296:-91.3564,0,-129.673	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	0/1:123:44,79:44:1553:79:2813:-215.954,0,-103.033	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.627	0/1:43:16,27:16:572:27:957:-73.4928,0,-38.8691	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.391	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:74:28,46:28:1008:46:1642:-125.775,0,-68.7601	0/1:56:19,37:19:684:37:1322:-102.419,0,-45.0326	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/0:24:24,0:24:852:0:0:0,-7.22472,-76.9851	0/0:15:14,1:14:496:1:36:0,-0.917175,-41.376	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/0:91:91,0:91:3199:0:0:0,-27.3937,-287.736	0/1:103:44,59:44:1580:59:2107:-158.892,0,-111.485	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/1:94:35,59:35:1260:59:2070:-158.185,0,-85.4087	0/1:34:22,12:22:792:12:424:-28.2614,0,-61.3707	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:86:31,55:31:1097:55:1964:-150.989,0,-73.1494	0/1:141:38,103:38:1349:103:3661:-287.234,0,-79.263	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:23:13,10:13:468:10:345:-24.4571,0,-35.536	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:46:20,26:20:720:26:928:-69.9909,0,-51.279	0/0:111:110,1:110:3935:1:36:0,-29.8161,-350.735	0/0:54:54,0:54:1917:0:0:0,-16.2556,-172.801	0/1:113:44,69:44:1572:69:2484:-189.796,0,-107.755	0/1:34:18,16:18:640:16:572:-41.5784,0,-47.6766	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/0:49:49,0:49:1700:0:0:0,-14.7505,-153.278	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.7996	0/0:132:131,1:131:4681:1:36:0,-36.1377,-417.834	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.397	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:14:6,6:6:216:6:212:-15.4543,0,-15.8183	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.078	0/1:143:64,79:64:2296:79:2810:-210.09,0,-163.854	0/1:62:24,38:24:864:38:1355:-103.586,0,-59.4187	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.747
chr04	2883759	.	C	T	32140.3	PASS	AB=0.595044;ABP=243.656;AC=44;AF=0.234043;AN=188;AO=1829;CIGAR=1X;DP=5767;DPB=5767;DPRA=1.4882;EPP=3974.63;EPPR=8554.27;GTI=4;LEN=1;MEANALT=1;MQM=59.9016;MQMR=59.9271;NS=94;NUMALT=1;ODDS=0.126912;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65445;QR=140263;RO=3938;RPL=1829;RPP=3974.63;RPPR=8554.27;RPR=0;RUN=1;SAF=0;SAP=3974.63;SAR=1829;SRF=0;SRP=8554.27;SRR=3938;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:38,19:38:1360:19:680:-44.3705,0,-105.542	0/0:44:44,0:44:1554:0:0:0,-13.2453,-140.148	0/0:77:76,1:76:2716:1:36:0,-19.581,-241.067	0/0:120:119,1:119:4245:1:36:0,-32.5253,-378.62	0/0:44:44,0:44:1557:0:0:0,-13.2453,-140.42	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:46:25,21:25:888:21:756:-54.5198,0,-66.3916	0/0:82:82,0:82:2917:0:0:0,-24.6845,-262.764	0/1:76:39,37:39:1385:37:1320:-96.2231,0,-102.069	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/0:72:72,0:72:2554:0:0:0,-21.6742,-230.108	0/0:84:84,0:84:2993:0:0:0,-25.2865,-269.601	0/1:56:28,28:28:1000:28:1004:-73.8182,0,-73.4577	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/1:60:28,32:28:1004:32:1148:-85.568,0,-72.6141	0/1:43:16,27:16:572:27:968:-74.4931,0,-38.8691	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	0/1:92:34,58:34:1212:58:2069:-158.784,0,-81.6916	0/1:86:36,50:36:1280:50:1777:-134.311,0,-89.6133	0/1:85:18,67:18:648:67:2385:-189.317,0,-33.0643	0/1:53:23,30:23:820:30:1050:-78.8517,0,-58.1679	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:100:43,57:43:1536:57:2048:-154.489,0,-108.43	0/1:174:87,87:87:3086:87:3128:-228.995,0,-225.587	0/1:219:66,153:66:2341:153:5504:-429.549,0,-145.023	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:140:49,91:49:1744:91:3249:-250.486,0,-115.096	0/1:93:34,59:34:1197:59:2097:-161.002,0,-80.027	0/0:62:62,0:62:2171:0:0:0,-18.6639,-195.651	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:15:9,6:9:324:6:212:-14.8915,0,-24.9904	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5035	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:33:13,20:13:460:20:720:-55.1948,0,-31.8014	0/0:165:165,0:165:5909:0:0:0,-49.6699,-531.917	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.696	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.337	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:66:22,44:22:784:44:1584:-122.984,0,-51.0159	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:118:38,80:38:1364:80:2868:-222.835,0,-87.5216	0/1:53:24,29:24:860:29:1040:-77.9598,0,-61.7672	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:85:49,36:49:1741:36:1280:-89.9157,0,-131.385	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:123:44,79:44:1580:79:2840:-218.811,0,-105.465	0/0:62:62,0:62:2209:0:0:0,-18.6639,-198.987	0/1:45:17,28:17:612:28:996:-76.3718,0,-41.8671	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:76:29,47:29:1040:47:1682:-128.773,0,-71.0361	0/1:58:19,39:19:657:39:1404:-109.188,0,-41.9907	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3057	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/0:88:88,0:88:3050:0:0:0,-26.4906,-274.517	0/1:104:44,60:44:1568:60:2139:-161.469,0,-110.105	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:71:71,0:71:2518:0:0:0,-21.3731,-226.869	0/1:92:33,59:33:1180:59:2120:-163.288,0,-78.8133	0/1:36:23,13:23:828:13:464:-31.2604,0,-64.007	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:86:30,56:30:1038:56:2008:-154.947,0,-67.8365	0/1:143:39,104:39:1355:104:3694:-289.6,0,-79.1943	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/1:23:13,10:13:464:10:360:-25.8206,0,-35.1738	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.249	0/1:49:21,28:21:756:28:1000:-75.5649,0,-53.6144	0/0:112:111,1:111:3915:1:36:0,-30.1171,-348.747	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.225	0/1:117:49,68:49:1740:68:2435:-184.185,0,-121.664	0/1:36:18,18:18:644:18:644:-47.4535,0,-47.4359	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:26:26,0:26:902:0:0:0,-7.82678,-81.4888	0/0:132:131,1:131:4669:1:36:0,-36.1377,-416.766	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.399	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.538	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.068	0/1:142:63,79:63:2233:79:2820:-211.286,0,-158.486	0/1:66:23,43:23:828:43:1544:-119.385,0,-54.9761	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616
chr04	2898418	.	A	G	12456.1	PASS	AB=0.282887;ABP=2051.01;AC=40;AF=0.212766;AN=188;AO=1430;CIGAR=1X;DP=13361;DPB=13361;DPRA=1.05526;EPP=3108.22;EPPR=25882.6;GTI=9;LEN=1;MEANALT=1.06522;MQM=58.5392;MQMR=51.9961;NS=94;NUMALT=1;ODDS=2.03121;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47189;QR=421295;RO=11926;RPL=3;RPP=3082.21;RPPR=3.13339;RPR=1427;RUN=1;SAF=3;SAP=3082.21;SAR=1427;SRF=5978;SRP=3.17417;SRR=5948;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:24,15:24:840:15:483:-32.0383,0,-63.4499	0/0:305:305,0:305:10819:0:0:0,-91.8141,-954.082	0/0:191:191,0:191:6727:0:0:0,-57.4967,-597.896	0/0:328:327,1:327:11619:1:36:0,-95.5502,-1033.01	0/0:171:171,0:171:6059:0:0:0,-51.4761,-538.785	0/0:108:108,0:108:3834:0:0:0,-32.5112,-338.94	0/1:229:143,85:143:5054:85:2819:-184.928,0,-382.27	0/0:247:247,0:247:8693:0:0:0,-74.3544,-769.302	0/1:92:63,29:63:2228:29:918:-55.2164,0,-169.042	0/0:213:213,0:213:7546:0:0:0,-64.1194,-674.354	0/0:66:66,0:66:2324:0:0:0,-19.868,-205.932	0/0:115:115,0:115:4047:0:0:0,-34.6184,-359.378	0/1:56:40,16:40:1410:16:511:-29.4353,0,-109.135	0/0:68:68,0:68:2394:0:0:0,-20.47,-211.983	0/1:65:49,16:49:1707:16:516:-27.0855,0,-133.739	0/1:43:29,14:29:1023:14:469:-29.5848,0,-78.4661	0/0:100:100,0:100:3547:0:0:0,-30.103,-312.372	0/0:77:76,0:76:2707:0:0:0,-22.8783,-238.056	0/1:37:26,10:26:915:10:318:-17.7302,0,-69.8126	0/1:403:305,98:305:10853:98:3274:-173.061,0,-846.218	0/1:229:151,78:151:5309:78:2635:-168.278,0,-404.44	0/1:87:64,23:64:2249:23:762:-42.3057,0,-175.358	0/1:73:57,16:57:2006:16:547:-27.5544,0,-156.159	0/0:240:233,7:233:8257:7:226:0,-51.6362,-715.16	0/1:85:73,12:73:2557:12:381:-9.0036,0,-203.094	0/1:400:302,98:302:10648:98:3243:-171.557,0,-831.42	0/1:198:153,45:153:5406:45:1403:-66.9411,0,-420.534	0/0:54:54,0:54:1901:0:0:0,-16.2556,-169.459	0/1:413:310,103:310:10983:103:3454:-186.414,0,-858.607	0/1:106:65,41:65:2308:41:1391:-93.2497,0,-173.44	0/0:205:205,0:205:7271:0:0:0,-61.7111,-647.91	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:6:5,1:5:180:1:32:-1.39313,0,-14.7459	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.7129	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.5341	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.393	0/0:314:314,0:314:11037:0:0:0,-94.5234,-988.523	0/0:260:260,0:260:9181:0:0:0,-78.2678,-818.562	0/0:103:103,0:103:3628:0:0:0,-31.0061,-318.952	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.43313	0/1:195:112,83:112:3953:83:2694:-183.905,0,-292.673	0/0:65:65,0:65:2324:0:0:0,-19.5669,-206.029	0/1:126:94,32:94:3319:32:1031:-55.132,0,-258.999	0/1:100:70,30:70:2447:30:948:-55.462,0,-188.989	0/0:111:110,0:110:3864:0:0:0,-33.1133,-345.338	0/1:61:39,22:39:1396:22:767:-50.9696,0,-107.41	0/0:223:223,0:223:7846:0:0:0,-67.1297,-691.494	0/1:225:170,55:170:6029:55:1843:-98.2447,0,-469.935	0/0:153:153,0:153:5386:0:0:0,-46.0576,-479.947	0/1:168:119,48:119:4227:48:1604:-94.0244,0,-325.524	0/0:356:356,0:356:12572:0:0:0,-107.167,-1125.64	0/0:8:8,0:8:284:0:0:0,-2.40824,-24.5527	0/1:160:120,40:120:4237:40:1332:-72.0027,0,-327.563	0/1:38:28,10:28:988:10:326:-18.2123,0,-77.0274	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.8542	0/0:335:333,2:333:11696:2:72:0,-94.0083,-1031.48	0/0:45:45,0:45:1592:0:0:0,-13.5463,-142.803	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:12:10,2:10:360:2:57:-1.74188,0,-29.0415	0/0:107:107,0:107:3783:0:0:0,-32.2102,-336.994	0/1:103:77,26:77:2720:26:823:-43.3069,0,-211.947	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:382:381,1:381:13487:1:36:0,-111.395,-1200.84	0/1:230:174,56:174:6160:56:1836:-96.1642,0,-482.022	0/1:81:64,17:64:2276:17:541:-24.6072,0,-178.613	0/0:187:187,0:187:6600:0:0:0,-56.2926,-589.564	0/1:213:153,60:153:5404:60:1988:-115.005,0,-416.173	0/1:79:40,39:40:1424:39:1331:-96.1433,0,-103.908	0/0:26:26,0:26:924:0:0:0,-7.82678,-82.0846	0/0:165:165,0:165:5812:0:0:0,-49.6699,-514.55	0/0:110:110,0:110:3872:0:0:0,-33.1133,-345.117	0/1:21:12,9:12:420:9:298:-20.8182,0,-31.3532	0/0:105:105,0:105:3693:0:0:0,-31.6081,-329.672	0/1:117:81,36:81:2842:36:1217:-73.0809,0,-217.236	0/0:282:282,0:282:9972:0:0:0,-84.8905,-884.259	0/0:372:372,0:372:13237:0:0:0,-111.983,-1180.42	0/1:94:69,25:69:2422:25:848:-48.297,0,-181.749	0/1:131:103,28:103:3624:28:953:-46.5549,0,-282.514	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:247:247,0:247:8722:0:0:0,-74.3544,-776.738	0/0:224:221,3:221:7803:3:100:0,-58.1003,-679.343	0/0:587:587,0:587:20779:0:0:0,-176.705,-1853.94	0/0:141:141,0:141:5001:0:0:0,-42.4452,-446.338	0/0:71:71,0:71:2524:0:0:0,-21.3731,-225.615	0/1:85:53,32:53:1845:32:1035:-67.7995,0,-139.312	0/0:207:206,1:206:7252:1:36:0,-59.1256,-644.034	0/1:49:29,20:29:1028:20:635:-42.6636,0,-76.1351	0/0:105:105,0:105:3677:0:0:0,-31.6081,-326.477	0/0:99:99,0:99:3512:0:0:0,-29.802,-309.765	0/0:50:50,0:50:1775:0:0:0,-15.0515,-157.608	0/1:74:64,10:64:2249:10:314:-6.28739,0,-178.278	0/1:76:42,34:42:1443:34:1074:-74.0539,0,-106.164	0/0:219:219,0:219:7740:0:0:0,-65.9256,-688.649	0/0:170:170,0:170:5914:0:0:0,-51.1751,-528.513
chr04	2899200	.	G	A	20477	PASS	AB=0.505297;ABP=3.60847;AC=45;AF=0.239362;AN=188;AO=1247;CIGAR=1X;DP=5141;DPB=5141;DPRA=1.12138;EPP=2710.84;EPPR=8454.38;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.5068;MQMR=59.4543;NS=94;NUMALT=1;ODDS=1.0528;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44187;QR=138372;RO=3892;RPL=1247;RPP=2710.84;RPPR=8454.38;RPR=0;RUN=1;SAF=1247;SAP=2710.84;SAR=0;SRF=3892;SRP=8454.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:4,6:4:135:6:208:-16.0488,0,-9.47221	0/0:82:82,0:82:2921:0:0:0,-24.6845,-262.979	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.719	0/0:127:127,0:127:4502:0:0:0,-38.2308,-405.269	0/0:66:66,0:66:2344:0:0:0,-19.868,-210.937	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:81:39,42:39:1404:42:1496:-110.523,0,-102.275	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.459	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	0/0:52:52,0:52:1841:0:0:0,-15.6536,-165.868	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.503	0/0:26:26,0:26:911:0:0:0,-7.82678,-82.2467	0/1:31:13,18:13:460:18:621:-46.8609,0,-32.4034	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.876	0/1:24:13,11:13:455:11:388:-28.004,0,-34.0472	0/1:30:16,14:16:543:14:485:-34.9461,0,-40.1577	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.64	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:14:7,7:7:252:7:244:-18.085,0,-18.8112	0/1:154:83,69:83:2976:69:2452:-174.791,0,-221.956	0/1:44:25,19:25:882:19:657:-46.1619,0,-66.4512	0/1:128:47,81:47:1669:81:2904:-223.007,0,-111.914	0/1:29:16,13:16:576:13:459:-32.841,0,-43.4451	0/0:50:47,3:47:1679:3:100:0,-5.72106,-142.021	0/1:36:20,16:20:704:16:576:-41.3379,0,-52.8475	0/1:206:102,104:102:3617:104:3701:-271.252,0,-263.722	0/1:126:44,82:44:1568:82:2928:-225.757,0,-103.392	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0929	0/1:164:100,64:100:3547:64:2254:-153.667,0,-270.069	0/1:98:43,55:43:1511:55:1941:-145.378,0,-106.779	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.469	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:9:8,1:8:279:1:36:-0.889005,0,-22.7383	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5231	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:7:4,3:4:144:3:93:-6.56937,0,-11.2064	0/0:113:113,0:113:3986:0:0:0,-34.0164,-358.874	0/0:135:135,0:135:4817:0:0:0,-40.639,-433.512	0/0:30:30,0:30:1044:0:0:0,-9.0309,-94.2669	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:91:42,49:42:1495:49:1732:-128.732,0,-107.45	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:104:53,51:53:1877:51:1824:-133.098,0,-137.9	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6511	0/0:22:22,0:22:768:0:0:0,-6.62266,-69.4288	0/1:55:20,35:20:720:35:1252:-96.4284,0,-48.5713	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.87	0/1:60:38,22:38:1341:22:746:-49.3888,0,-102.878	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.145	0/1:81:34,47:34:1201:47:1680:-127.104,0,-84.0094	0/0:139:139,0:139:4966:0:0:0,-41.8432,-446.936	0/1:6:2,4:2:72:4:144:-11.4783,0,-5.03012	0/1:97:41,56:41:1476:56:1987:-149.804,0,-103.9	0/1:46:24,22:24:845:22:788:-57.369,0,-62.4747	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.05	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4008	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:71:47,24:47:1645:24:856:-55.6167,0,-126.962	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:156:155,1:155:5564:1:36:0,-43.3624,-497.244	0/1:72:34,38:34:1224:38:1341:-99.2855,0,-88.7347	0/1:31:23,8:23:798:8:284:-16.5714,0,-62.7562	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.684	0/1:87:41,46:41:1468:46:1640:-121.687,0,-106.12	0/1:107:42,65:42:1472:65:2308:-175.743,0,-100.417	0/0:20:20,0:20:704:0:0:0,-6.0206,-63.6845	0/0:70:70,0:70:2479:0:0:0,-21.0721,-223.328	0/0:50:50,0:50:1778:0:0:0,-15.0515,-160.273	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:61:61,0:61:2175:0:0:0,-18.3628,-195.983	0/1:20:12,8:12:428:8:269:-18.5155,0,-32.8382	0/0:54:54,0:54:1899:0:0:0,-16.2556,-170.543	0/0:119:119,0:119:4264:0:0:0,-35.8226,-383.828	0/1:76:41,35:41:1431:35:1225:-87.5838,0,-106.204	0/1:44:21,23:21:752:23:820:-60.8055,0,-54.7609	0/1:5:2,3:2:68:3:108:-8.53301,0,-4.91488	0/0:81:81,0:81:2907:0:0:0,-24.3834,-261.76	0/0:61:61,0:61:2166:0:0:0,-18.3628,-195.155	0/0:123:123,0:123:4368:0:0:0,-37.0267,-393.204	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.044	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9339	0/1:34:13,21:13:464:21:744:-57.0493,0,-31.8575	0/0:55:55,0:55:1956:0:0:0,-16.5566,-176.256	0/1:28:12,16:12:415:16:544:-40.814,0,-29.2514	0/0:38:38,0:38:1330:0:0:0,-11.4391,-119.954	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0929	0/1:59:35,24:35:1239:24:848:-58.833,0,-94.0529	0/1:22:10,12:10:360:12:428:-32.2052,0,-26.1216	0/0:56:56,0:56:1977:0:0:0,-16.8577,-178.134	0/0:43:43,0:43:1504:0:0:0,-12.9443,-135.628
chr04	2899314	.	A	G	18780.3	PASS	AB=0.503506;ABP=3.2539;AC=43;AF=0.231183;AN=186;AO=1154;CIGAR=1X;DP=4638;DPB=4638;DPRA=1.15294;EPP=2508.89;EPPR=7568.42;GTI=0;LEN=1;MEANALT=1;MQM=59.9714;MQMR=59.9977;NS=93;NUMALT=1;ODDS=1.33054;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40803;QR=124074;RO=3484;RPL=0;RPP=2508.89;RPPR=7568.42;RPR=1154;RUN=1;SAF=0;SAP=2508.89;SAR=1154;SRF=0;SRP=7568.42;SRR=3484;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.665	0/0:102:102,0:102:3638:0:0:0,-30.7051,-327.625	0/0:51:51,0:51:1827:0:0:0,-15.3525,-164.71	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:68:41,27:41:1468:27:968:-66.9673,0,-111.946	0/0:81:81,0:81:2858:0:0:0,-24.3834,-257.456	0/1:41:23,18:23:819:18:609:-42.7835,0,-61.6893	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:42:42,0:42:1476:0:0:0,-12.6433,-133.132	0/1:35:25,10:25:896:10:356:-21.8452,0,-70.4243	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:28:12,16:12:428:16:572:-43.3846,0,-30.43	0/1:30:16,14:16:572:14:500:-36.3053,0,-42.7825	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:19:8,11:8:288:11:358:-26.8136,0,-20.5478	0/1:114:44,70:44:1584:70:2514:-192.194,0,-108.534	0/1:78:44,34:44:1568:34:1212:-85.906,0,-117.931	0/1:88:34,54:34:1215:54:1905:-145.235,0,-83.1651	0/1:29:19,10:19:680:10:360:-24.0144,0,-52.7993	0/0:66:65,1:65:2336:1:36:0,-16.2697,-206.901	0/1:51:34,17:34:1220:17:599:-38.8856,0,-94.7543	0/1:180:103,77:103:3695:77:2699:-188.966,0,-278.566	0/1:115:54,61:54:1923:61:2169:-160.857,0,-138.728	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:160:84,76:84:2986:76:2710:-195.978,0,-220.807	0/1:61:38,23:38:1347:23:824:-56.1205,0,-103.167	0/0:48:48,0:48:1697:0:0:0,-14.4494,-153.014	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:5:5,0:5:156:0:0:0,-1.50515,-14.347	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:115:115,0:115:4096:0:0:0,-34.6184,-368.825	0/0:102:102,0:102:3626:0:0:0,-30.7051,-326.546	0/0:36:36,0:36:1268:0:0:0,-10.8371,-114.42	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:78:37,41:37:1324:41:1414:-104.068,0,-95.9818	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:67:34,33:34:1203:33:1184:-86.6993,0,-88.406	0/1:36:19,17:19:675:17:577:-41.4094,0,-50.2399	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:57:31,26:31:1103:26:914:-65.416,0,-82.4211	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/1:80:26,54:26:928:54:1917:-148.723,0,-59.7559	0/0:69:68,1:68:2404:1:36:0,-17.1728,-213.017	0/1:70:32,38:32:1125:38:1360:-101.628,0,-80.4839	0/0:28:27,1:27:959:1:36:0,-4.83056,-83.0271	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:55:25,30:25:892:30:1068:-79.8754,0,-64.043	0/1:27:15,12:15:536:12:432:-31.0934,0,-40.447	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:58:58,0:58:2044:0:0:0,-17.4597,-184.23	0/0:28:27,1:27:968:1:36:0,-4.83056,-83.8391	.:.:.:.:.:.:.:.	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:21:21,0:21:738:0:0:0,-6.32163,-66.7414	0/1:77:41,36:41:1467:36:1262:-90.6991,0,-109.146	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:102:102,0:102:3615:0:0:0,-30.7051,-325.556	0/1:108:40,68:40:1421:68:2392:-183.023,0,-95.6742	0/1:34:21,13:21:747:13:454:-30.9565,0,-57.3193	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:79:36,43:36:1279:43:1494:-110.965,0,-91.6311	0/1:50:22,28:22:788:28:984:-73.82,0,-56.1933	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:56:56,0:56:1978:0:0:0,-16.8577,-178.293	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:15:11,4:11:379:4:140:-8.42913,0,-29.9251	0/0:82:82,0:82:2914:0:0:0,-24.6845,-262.495	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:59:59,0:59:2083:0:0:0,-17.7608,-187.737	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:103:47,56:47:1680:56:2001:-149.356,0,-120.481	0/1:40:24,16:24:855:16:561:-38.7759,0,-65.229	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:75:75,0:75:2664:0:0:0,-22.5772,-240.004	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/0:131:131,0:131:4676:0:0:0,-39.4349,-421	0/0:85:84,1:84:3000:1:36:0,-21.9893,-266.634	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/1:35:15,20:15:514:20:701:-52.8757,0,-36.0478	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/1:28:12,16:12:428:16:559:-42.2088,0,-30.43	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:31:31,0:31:1099:0:0:0,-9.33193,-99.2195	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:39:16,23:16:576:23:815:-61.9306,0,-40.4348	0/1:35:15,20:15:540:20:711:-53.7796,0,-38.4005	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6677	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819
chr04	2901392	.	G	A	237417	PASS	AB=0.51825;ABP=18.5446;AC=144;AF=0.765957;AN=188;AO=8742;CIGAR=1X;DP=11351;DPB=11351;DPRA=0;EPP=163.577;EPPR=10.0684;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.7561;MQMR=59.9704;NS=94;NUMALT=1;ODDS=8.8946;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312651;QR=93097;RO=2604;RPL=3969;RPP=163.577;RPPR=10.0684;RPR=4773;RUN=1;SAF=0;SAP=18986;SAR=8742;SRF=0;SRP=5657.52;SRR=2604;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:13,25:13:468:25:900:-69.8726,0,-31.0205	1/1:174:1,173:1:36:173:6178:-552.441,-48.7809,0	1/1:188:0,188:0:0:188:6697:-602.646,-56.5936,0	1/1:182:1,181:1:36:181:6494:-580.944,-51.1892,0	1/1:60:1,59:1:36:59:2094:-185.105,-14.4635,0	1/1:63:0,63:0:0:63:2221:-199.973,-18.9649,0	0/1:196:90,106:90:3205:106:3785:-281.796,0,-229.67	1/1:180:3,177:3:108:177:6337:-560.182,-44.1102,0	0/1:80:32,48:32:1144:48:1697:-128.915,0,-79.1871	1/1:139:0,139:0:0:139:4945:-445.14,-41.8432,0	1/1:222:1,221:1:36:221:7924:-709.522,-63.2304,0	1/1:99:0,99:0:0:99:3547:-319.41,-29.802,0	0/1:96:52,44:52:1860:44:1580:-113.583,0,-138.781	1/1:142:0,142:0:0:142:5066:-456.076,-42.7463,0	0/1:83:43,39:43:1517:39:1396:-100.895,0,-111.777	0/1:61:24,37:24:860:37:1328:-101.459,0,-59.359	1/1:103:0,103:0:0:103:3674:-330.751,-31.0061,0	1/1:78:1,77:1:36:77:2772:-246.113,-19.8821,0	0/1:90:39,51:39:1400:51:1832:-138.066,0,-99.2065	0/1:220:106,114:106:3808:114:4081:-301.225,0,-276.676	0/1:122:49,73:49:1756:73:2592:-196.802,0,-121.598	0/1:71:38,33:38:1368:33:1184:-85.4952,0,-102.048	0/1:71:36,35:36:1287:35:1256:-91.9706,0,-94.7597	1/1:113:6,107:6:216:107:3840:-325.991,-14.2259,0	0/1:95:40,55:40:1424:55:1972:-149.157,0,-99.8596	0/1:350:147,203:147:5263:203:7269:-548.894,0,-368.445	0/1:229:113,116:113:4060:116:4168:-306.36,0,-296.65	1/1:53:0,53:0:0:53:1900:-171.148,-15.9546,0	0/1:340:174,166:174:6231:166:5960:-433.953,0,-458.535	0/1:168:78,90:78:2795:90:3209:-238.298,0,-201.216	1/1:158:0,158:0:0:158:5598:-503.91,-47.5627,0	0/1:13:9,4:9:320:4:140:-9.03119,0,-25.229	0/1:21:14,7:14:500:7:237:-15.3367,0,-39.0145	1/1:5:0,5:0:0:5:180:-16.5437,-1.50515,0	1/1:28:0,28:0:0:28:1008:-91.019,-8.42884,0	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	1/1:237:0,237:0:0:237:8482:-763.377,-71.3441,0	1/1:191:0,191:0:0:191:6825:-614.293,-57.4967,0	1/1:128:0,128:0:0:128:4588:-412.986,-38.5318,0	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:160:71,89:71:2509:89:3185:-238.703,0,-177.897	1/1:73:0,73:0:0:73:2607:-234.819,-21.9752,0	0/1:89:40,49:40:1436:49:1754:-131.344,0,-102.746	0/1:126:60,66:60:2156:66:2357:-174.443,0,-156.377	1/1:76:1,75:1:32:75:2685:-238.679,-19.679,0	0/1:61:28,33:28:999:33:1176:-87.6272,0,-71.8617	1/1:133:0,133:0:0:133:4752:-427.803,-40.037,0	0/1:253:128,125:128:4557:125:4487:-327.823,0,-334.136	1/1:163:0,163:0:0:163:5834:-524.789,-49.0679,0	0/1:204:83,121:83:2937:121:4307:-326.343,0,-203.152	1/1:78:0,77:0:0:77:2739:-246.387,-23.1793,0	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:307:149,158:149:5318:158:5641:-415.108,0,-386.147	0/1:67:31,36:31:1116:36:1296:-96.7749,0,-80.5827	1/1:29:0,29:0:0:29:1035:-93.4538,-8.72987,0	1/1:145:0,145:0:0:145:5179:-466.239,-43.6494,0	1/1:66:0,66:0:0:66:2357:-212.382,-19.868,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:30:9,21:9:320:21:741:-57.9807,0,-20.1115	1/1:91:0,91:0:0:91:3252:-292.899,-27.3937,0	0/1:159:69,90:69:2471:90:3217:-241.874,0,-174.779	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:124:0,124:0:0:124:4419:-397.722,-37.3277,0	0/1:186:118,67:118:4200:67:2367:-157.234,0,-322.131	0/1:122:47,75:47:1680:75:2687:-205.307,0,-114.761	1/1:103:0,103:0:0:103:3681:-331.463,-31.0061,0	0/1:133:62,71:62:2224:71:2556:-190.246,0,-160.387	0/1:70:51,19:51:1832:19:676:-40.0959,0,-143.717	1/1:104:0,104:0:0:104:3732:-335.691,-31.3071,0	1/1:95:0,95:0:0:95:3405:-306.643,-28.5979,0	1/1:136:0,136:0:0:136:4856:-437.031,-40.9401,0	0/1:31:13,18:13:468:18:644:-48.9505,0,-33.1277	1/1:148:0,147:0:0:147:5237:-470.893,-44.2514,0	0/1:83:44,39:44:1576:39:1389:-100.309,0,-117.146	1/1:230:0,229:0:0:229:8196:-737.403,-68.9359,0	1/1:201:0,201:0:0:201:7195:-647.602,-60.507,0	0/1:206:116,90:116:4127:90:3228:-228.671,0,-309.601	0/1:176:85,91:85:3038:91:3272:-241.584,0,-220.668	0/1:22:10,12:10:356:12:428:-32.2361,0,-25.7586	1/1:178:2,176:2:72:176:6300:-560.25,-46.7466,0	1/1:154:0,154:0:0:154:5504:-495.335,-46.3586,0	1/1:173:0,173:0:0:173:6182:-556.35,-52.0782,0	1/1:132:0,132:0:0:132:4752:-427.835,-39.736,0	1/1:81:0,81:0:0:81:2901:-261.325,-24.3834,0	0/1:79:44,35:44:1576:35:1260:-89.8955,0,-118.35	1/1:178:1,177:1:36:177:6323:-565.499,-49.9851,0	0/1:69:32,37:32:1152:37:1332:-99.4021,0,-83.2191	1/1:95:0,95:0:0:95:3412:-307.254,-28.5979,0	1/1:114:0,114:0:0:114:4096:-368.788,-34.3174,0	1/1:124:0,124:0:0:124:4451:-400.736,-37.3277,0	0/1:250:117,133:117:4199:133:4762:-353.458,0,-302.832	0/1:85:54,31:54:1936:31:1116:-75.1641,0,-148.929	1/1:45:0,45:0:0:45:1601:-144.378,-13.5464,0	1/1:139:1,138:1:32:138:4938:-441.355,-38.6439,0
chr04	2969971	.	C	A	14267.4	PASS	AB=0.425774;ABP=108.099;AC=41;AF=0.218085;AN=188;AO=939;CIGAR=1X;DP=4687;DPB=4687;DPRA=1.2739;EPP=2042.02;EPPR=8135.17;GTI=2;LEN=1;MEANALT=1.04444;MQM=59.9862;MQMR=59.9642;NS=94;NUMALT=1;ODDS=0.734061;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33280;QR=134225;RO=3745;RPL=0;RPP=2042.02;RPPR=8135.17;RPR=939;RUN=1;SAF=939;SAP=2042.02;SAR=0;SRF=3745;SRP=8135.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:24,13:24:845:13:464:-30.9594,0,-65.229	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.186	0/0:94:94,0:94:3353:0:0:0,-28.2968,-301.986	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.079	0/1:82:50,32:50:1796:32:1148:-78.9454,0,-137.232	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:55:36,19:36:1292:19:684:-45.3337,0,-100.027	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4223	0/1:16:7,9:7:252:9:313:-23.6886,0,-18.2125	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:79:43,36:43:1536:36:1296:-93.1626,0,-114.734	0/1:45:27,18:27:972:18:648:-45.1055,0,-74.2516	0/1:80:36,43:36:1292:43:1514:-112.408,0,-92.4426	0/1:54:33,21:33:1180:21:756:-52.1116,0,-90.2524	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:51:33,18:33:1184:18:644:-42.9381,0,-91.5158	0/1:156:107,49:107:3852:49:1755:-111.273,0,-299.913	0/1:128:75,51:75:2676:51:1803:-124.247,0,-202.794	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.455	0/1:149:84,65:84:3004:65:2246:-157.541,0,-225.738	0/1:73:43,30:43:1514:30:1061:-73.8242,0,-114.574	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/0:116:115,1:115:4136:1:36:0,-31.3212,-368.824	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:64:34,30:34:1224:30:1080:-78.2473,0,-91.2011	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:75:49,26:49:1764:26:917:-60.2674,0,-136.462	0/1:20:6,14:6:216:14:500:-39.3156,0,-13.7699	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:93:53,40:53:1904:40:1421:-100.19,0,-143.638	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:85:48,37:48:1716:37:1313:-92.8821,0,-129.138	0/0:118:117,1:117:4208:1:36:0,-31.9233,-375.3	0/1:79:42,37:42:1508:37:1302:-93.6959,0,-111.455	0/0:143:143,0:143:5109:0:0:0,-43.0473,-459.952	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:76:50,26:50:1800:26:936:-61.6812,0,-139.404	0/1:24:11,13:11:396:13:460:-34.5107,0,-28.758	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.323	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:69:32,37:32:1152:37:1332:-99.4113,0,-83.2191	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:100:100,0:100:3572:0:0:0,-30.103,-321.688	0/1:102:64,38:64:2285:38:1322:-88.5685,0,-175.205	0/1:43:28,15:28:1004:15:531:-35.1776,0,-77.7316	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:77:47,30:47:1688:30:1076:-73.9735,0,-129.028	0/1:71:28,43:28:1004:43:1522:-115.897,0,-69.2994	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:44:43,1:43:1544:1:21:0,-11.1454,-137.152	0/0:53:52,1:52:1868:1:36:0,-12.3563,-164.801	0/1:10:6,4:6:216:4:125:-8.54832,0,-16.7802	0/0:99:99,0:99:3541:0:0:0,-29.802,-318.897	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:73:35,38:35:1251:38:1293:-94.6834,0,-90.9191	0/1:33:17,16:17:608:16:576:-42.241,0,-45.118	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:148:148,0:148:5293:0:0:0,-44.5524,-476.504	0/0:75:75,0:75:2687:0:0:0,-22.5772,-242.074	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.505	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:30:18,12:18:639:12:432:-30.1903,0,-48.8073	0/1:12:3,9:3:108:9:309:-24.5283,0,-6.46281	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822
chr04	2969982	.	G	A	80043	PASS	AB=0.574886;ABP=109.684;AC=147;AF=0.781915;AN=188;AO=3742;CIGAR=1X;DP=4675;DPB=4675;DPRA=0;EPP=8067.97;EPPR=2020.32;GTI=3;LEN=1;MEANALT=1;MQM=59.9599;MQMR=59.9861;NS=94;NUMALT=1;ODDS=0.0911251;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133813;QR=33397;RO=933;RPL=7;RPP=8067.97;RPPR=2020.32;RPR=3735;RUN=1;SAF=3742;SAP=8128.66;SAR=0;SRF=933;SRP=2028.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:13,24:13:468:24:864:-66.9445,0,-31.3215	1/1:68:0,68:0:0:68:2421:-218.116,-20.47,0	1/1:92:0,92:0:0:92:3289:-296.228,-27.6948,0	1/1:54:0,54:0:0:54:1898:-171.094,-16.2556,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:40:0,40:0:0:40:1436:-129.529,-12.0412,0	0/1:83:32,51:32:1152:51:1832:-140.167,0,-79.0047	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	0/1:54:18,36:18:644:36:1296:-100.688,0,-42.035	1/1:59:0,59:0:0:59:2044:-184.225,-17.7608,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:21:11,10:11:396:10:360:-26.4223,0,-29.6611	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:13:6,7:6:212:7:246:-18.5682,0,-15.5114	0/1:76:34,42:34:1220:42:1501:-112.504,0,-87.2285	0/1:46:18,28:18:644:28:1000:-76.468,0,-44.4432	0/1:80:43,37:43:1544:37:1328:-95.7398,0,-115.171	0/1:53:20,33:20:720:33:1180:-90.5535,0,-49.1742	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:52:19,33:19:684:33:1180:-90.8545,0,-46.2368	0/1:155:51,104:51:1824:104:3691:-285.73,0,-117.781	0/1:125:50,75:50:1796:75:2673:-203.185,0,-124.265	1/1:13:0,13:0:0:13:464:-42.0929,-3.91339,0	0/1:150:65,85:65:2328:85:3037:-228.404,0,-164.625	0/1:73:31,42:31:1112:42:1489:-112.327,0,-78.4162	1/1:84:0,84:0:0:84:3001:-270.32,-25.2865,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:96:0,96:0:0:96:3436:-309.453,-28.8989,0	1/1:116:0,116:0:0:116:4172:-375.66,-34.9195,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:65:31,34:31:1116:34:1224:-90.9001,0,-81.1847	1/1:16:0,16:0:0:16:556:-50.3653,-4.81648,0	0/1:74:25,49:25:900:49:1730:-133.7,0,-59.0448	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:91:38,53:38:1364:53:1892:-143.161,0,-95.667	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	0/1:85:37,48:37:1309:48:1724:-129.858,0,-92.522	1/1:116:0,116:0:0:116:4149:-373.592,-34.9195,0	0/1:79:37,42:37:1309:42:1512:-111.488,0,-94.3282	1/1:142:0,142:0:0:142:5080:-457.344,-42.7463,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:76:26,50:26:932:50:1788:-138.324,0,-61.3206	0/1:23:13,10:13:464:10:330:-23.0937,0,-35.1738	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:36:0,36:0:0:36:1292:-116.575,-10.8371,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:70:38,32:38:1351:32:1148:-82.5577,0,-100.817	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:100:0,100:0:0:100:3569:-321.417,-30.103,0	0/1:103:38,65:38:1349:65:2332:-179.133,0,-90.7022	0/1:42:14,28:14:504:28:1000:-77.6721,0,-33.0548	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:78:28,50:28:1008:50:1785:-137.45,0,-67.556	0/1:71:43,28:43:1544:28:1008:-69.6599,0,-117.88	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:45:0,45:0:0:45:1608:-145.009,-13.5464,0	1/1:52:1,51:1:36:51:1836:-161.922,-12.0553,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:102:0,102:0:0:102:3626:-326.544,-30.7051,0	0/1:27:12,15:12:424:15:540:-40.8087,0,-30.3686	1/1:124:1,123:1:36:123:4393:-391.944,-33.7294,0	1/1:73:0,73:0:0:73:2624:-236.406,-21.9752,0	0/1:73:38,35:38:1355:35:1256:-91.3701,0,-100.275	0/1:33:16,17:16:576:17:608:-45.118,0,-42.241	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:54:0,54:0:0:54:1929:-173.885,-16.2556,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:149:0,149:0:0:149:5333:-480.102,-44.8535,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	1/1:57:0,57:0:0:57:2042:-184.028,-17.1587,0	0/1:24:11,13:11:392:13:464:-34.8728,0,-28.3953	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:30:12,18:12:432:18:648:-49.621,0,-30.1903	0/1:12:9,3:9:316:3:108:-6.46281,0,-25.1665	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0
chr04	2976376	.	A	T	31806.5	PASS	AB=0.484549;ABP=11.1968;AC=44;AF=0.234043;AN=188;AO=1932;CIGAR=1X;DP=8865;DPB=8865;DPRA=1.05908;EPP=4198.29;EPPR=15049.1;GTI=1;LEN=1;MEANALT=1.07547;MQM=59.9979;MQMR=59.9934;NS=94;NUMALT=1;ODDS=1.12155;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69020;QR=247527;RO=6929;RPL=1932;RPP=4198.29;RPPR=15049.1;RPR=0;RUN=1;SAF=0;SAP=4198.29;SAR=1932;SRF=0;SRP=15049.1;SRR=6929;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:34,24:34:1209:24:864:-60.6228,0,-91.6544	0/0:195:195,0:195:6981:0:0:0,-58.7008,-628.352	0/0:140:140,0:140:5001:0:0:0,-42.1442,-450.237	0/0:159:159,0:159:5712:0:0:0,-47.8638,-514.109	0/0:114:114,0:114:4070:0:0:0,-34.3174,-366.484	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.666	0/1:91:56,34:56:1997:34:1220:-82.6543,0,-152.549	0/0:242:242,0:242:8642:0:0:0,-72.8493,-777.774	0/1:138:76,62:76:2694:62:2220:-158.522,0,-201.16	0/0:156:155,1:155:5537:1:36:0,-43.3624,-494.856	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:81:81,0:81:2901:0:0:0,-24.3834,-261.324	0/1:68:45,23:45:1616:23:828:-54.3741,0,-125.26	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:67:32,35:32:1152:35:1241:-91.8235,0,-83.8211	0/1:51:30,21:30:1080:21:756:-53.0147,0,-82.1607	0/0:88:88,0:88:3129:0:0:0,-26.4906,-281.836	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:35:13,22:13:468:22:792:-61.0696,0,-31.9236	0/1:130:72,58:72:2576:58:2069:-147.345,0,-192.956	0/1:153:87,66:87:3098:66:2368:-167.32,0,-232.987	0/1:53:18,35:18:648:35:1252:-97.0281,0,-42.6973	0/1:81:35,46:35:1256:46:1641:-123.593,0,-88.9619	0/0:152:143,9:143:5083:9:324:0,-16.2507,-428.107	0/1:63:37,26:37:1324:26:917:-63.8797,0,-100.497	0/1:228:109,118:109:3886:118:4210:-310.533,0,-281.387	0/1:255:132,123:132:4714:123:4393:-318.78,0,-347.654	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:177:98,79:98:3501:79:2817:-200.486,0,-262.017	0/1:112:62,50:62:2228:50:1785:-127.215,0,-167.068	0/0:97:97,0:97:3426:0:0:0,-29.1999,-308.554	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:12:3,9:3:108:9:309:-24.5283,0,-6.46281	0/0:213:213,0:213:7640:0:0:0,-64.1194,-687.634	0/0:144:144,0:144:5082:0:0:0,-43.3483,-457.521	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:6:3,3:3:93:3:104:-7.89663,0,-6.87055	0/1:126:74,52:74:2618:52:1856:-129.388,0,-197.936	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:165:73,92:73:2596:92:3297:-247.277,0,-184.217	0/1:104:51,53:51:1832:53:1908:-140.69,0,-133.854	0/0:80:79,1:79:2791:1:36:0,-20.4841,-247.829	0/1:116:49,67:49:1756:67:2389:-180.346,0,-123.405	0/0:191:189,2:189:6731:2:57:0,-52.0834,-600.45	0/1:113:49,64:49:1745:64:2259:-169.552,0,-123.316	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:121:69,52:69:2461:52:1868:-131.975,0,-185.318	0/0:105:105,0:105:3756:0:0:0,-31.6081,-338.24	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:119:66,53:66:2368:53:1908:-136.175,0,-177.555	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:131:130,1:130:4634:1:21:0,-37.335,-415.121	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:21:17,4:17:593:4:144:-6.99199,0,-47.3731	0/0:136:134,2:134:4755:2:72:0,-34.1034,-421.27	0/1:104:58,46:58:2084:46:1652:-117.661,0,-156.523	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:126:126,0:126:4505:0:0:0,-37.9298,-405.561	0/1:157:77,80:77:2741:80:2857:-210.104,0,-199.67	0/1:91:51,39:51:1813:39:1396:-98.4866,0,-135.997	0/0:97:96,1:96:3387:1:21:0,-27.1,-302.944	0/1:140:74,66:74:2626:66:2368:-171.234,0,-194.44	0/1:52:23,29:23:824:29:1044:-78.6212,0,-58.8298	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.676	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:105:57,48:57:2048:48:1728:-124.197,0,-152.983	0/0:168:168,0:168:5995:0:0:0,-50.573,-539.652	0/0:132:132,0:132:4744:0:0:0,-39.736,-427.116	0/1:155:82,73:82:2910:73:2606:-188.128,0,-215.474	0/1:147:68,79:68:2414:79:2809:-208.798,0,-173.262	0/1:23:15,8:15:536:8:273:-17.9765,0,-41.6511	0/0:135:135,0:135:4805:0:0:0,-40.639,-432.604	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.592	0/0:180:180,0:180:6449:0:0:0,-54.1854,-580.494	0/0:97:97,0:97:3477:0:0:0,-29.1999,-313.139	0/0:77:76,1:76:2732:1:36:0,-19.581,-242.524	0/1:114:61,52:61:2192:52:1849:-132.312,0,-163.169	0/0:155:154,1:154:5528:1:36:0,-43.0614,-494.045	0/1:28:9,19:9:324:19:684:-53.4615,0,-21.077	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.157	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.668	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:73:31,42:31:1116:42:1512:-114.399,0,-78.7765	0/1:51:13,38:13:468:38:1364:-107.708,0,-27.1071	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:107:107,0:107:3829:0:0:0,-32.2102,-344.805
chr04	2977939	.	GAAA	AAAT,GAAT	79253.4	PASS	AB=0.42132,0.576142;ABP=108.938,102.215;AC=139,47;AF=0.747312,0.252688;AN=186;AO=2638,1137;CIGAR=1X2M1X,3M1X;DP=3785;DPB=3789;DPRA=41.5714,1.16021;EPP=5731.35,2471.97;EPPR=13.8677;GTI=3;LEN=4,1;MEANALT=1.52747,2.02222;MQM=59.7843,59.9789;MQMR=60;NS=93;NUMALT=2;ODDS=0.126497;PAIRED=0,0;PAIREDR=0;PAO=12,0;PQA=354,0;PQR=0;PRO=0;QA=92733,40554;QR=157;RO=5;RPL=2638,1137;RPP=5731.35,2471.97;RPPR=13.8677;RPR=0,0;RUN=1,1;SAF=2638,1137;SAP=5731.35,2471.97;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,14,28:0:0:14,28:494,985:-120.545,-80.342,-76.1275,-40.5545,0,-32.1257	1/1:36:0,36,0:0:0:36,0:1252,0:-112.893,-10.8371,0,-112.893,-10.8371,-112.893	1/1:31:0,31,0:0:0:31,0:1088,0:-98.2269,-9.33193,0,-98.2269,-9.33193,-98.2269	1/1:51:0,51,0:0:0:51,0:1800,0:-162.273,-15.3525,0,-162.273,-15.3525,-162.273	1/1:33:0,33,0:0:0:33,0:1166,0:-105.245,-9.93399,0,-105.245,-9.93399,-105.245	1/1:33:0,33,0:0:0:33,0:1158,0:-104.525,-9.93399,0,-104.525,-9.93399,-104.525	1/2:24:0,8,16:0:0:8,16:284,576:-70.4971,-47.3585,-44.9503,-23.4951,0,-18.6786	1/1:79:0,79,0:0:0:79,0:2763,0:-248.91,-23.7814,0,-248.91,-23.7814,-248.91	1/2:71:0,25,46:0:0:25,46:881,1643:-206.038,-134.31,-126.785,-72.0813,0,-58.2339	1/1:28:0,28,0:0:0:28,0:1001,0:-90.406,-8.42884,0,-90.406,-8.42884,-90.406	1/1:23:0,23,0:0:0:23,0:805,0:-72.7688,-6.92369,0,-72.7688,-6.92369,-72.7688	1/1:35:0,35,0:0:0:35,0:1236,0:-111.542,-10.5361,0,-111.542,-10.5361,-111.542	1/2:28:0,12,16:0:0:12,16:429,567:-81.5254,-46.5442,-42.9319,-35.3371,0,-30.5206	1/1:29:0,28,0:0:0:28,0:986,0:-88.6927,-8.42884,0,-88.6927,-8.42884,-88.6927	1/2:28:0,16,12:0:0:16,12:567,428:-81.4357,-35.2464,-30.43,-46.5448,0,-42.9324	1/2:17:0,7,10:0:0:7,10:252,360:-50.2944,-29.734,-27.6268,-20.9202,0,-17.9099	1/1:24:0,24,0:0:0:24,0:856,0:-77.3601,-7.22472,0,-77.3601,-7.22472,-77.3601	1/1:19:0,19,0:0:0:19,0:659,0:-59.6308,-5.71957,0,-59.6308,-5.71957,-59.6308	1/2:13:0,4,9:0:0:4,9:143,324:-38.4558,-26.7966,-25.5925,-12.0173,0,-9.30805	1/2:59:0,25,34:0:0:25,34:882,1216:-171.303,-99.5115,-91.9858,-72.1458,0,-61.9108	1/2:86:1,35,50:1:30:35,50:1221,1788:-242.369,-143.453,-135.314,-96.8712,0,-84.2169	1/2:68:0,24,44:0:0:24,44:847,1576:-197.856,-128.886,-121.662,-69.3247,0,-56.0794	1/2:46:0,14,32:0:0:14,32:490,1127:-131.959,-92.1045,-87.8901,-40.2048,0,-30.5718	1/2:65:1,57,7:1:35:57,7:1981,243:-177.637,-16.9027,-2.59206,-158.185,0,-158.926	1/2:40:0,19,21:0:0:19,21:673,756:-116.867,-62.0456,-56.326,-55.1777,0,-48.8561	1/2:177:0,92,85:0:0:92,85:3217,3052:-511.026,-249.321,-221.626,-262.06,0,-236.472	1/2:59:0,22,37:0:0:22,37:782,1320:-171.688,-107.964,-101.341,-64.0794,0,-52.9413	1/1:16:0,16,0:0:0:16,0:568,0:-51.4524,-4.81648,0,-51.4524,-4.81648,-51.4524	1/2:112:0,56,56:0:0:56,56:1962,1991:-322.25,-162.606,-145.748,-159.997,0,-143.14	1/2:41:0,18,22:0:0:18,22:633,788:-115.892,-64.3674,-58.9489,-51.6219,0,-44.9993	1/1:38:1,37,0:1:26:37,0:1291,0:-113.89,-8.83931,0,-114.191,-11.1381,-116.227	1/2:8:0,2,6:0:0:2,6:72,216:-23.8592,-17.9843,-17.3823,-6.23466,0,-4.42848	1/2:8:0,7,1:0:0:7,1:240,36:-22.7669,-3.29724,-1.19003,-19.8274,0,-19.5264	1/2:4:0,3,1:0:0:3,1:102,27:-10.7246,-2.39875,-1.49566,-8.61329,0,-8.31226	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:109:0,109,0:0:0:109,0:3827,0:-344.23,-32.8123,0,-344.23,-32.8123,-344.23	1/1:102:0,102,0:0:0:102,0:3585,0:-322.856,-30.7051,0,-322.856,-30.7051,-322.856	1/1:17:0,17,0:0:0:17,0:602,0:-54.5092,-5.11751,0,-54.5092,-5.11751,-54.5092	.:.:.:.:.:.:.:.	1/2:27:0,10,17:0:0:10,17:359,612:-79.5785,-50.2959,-47.2856,-29.6418,0,-24.5243	1/1:12:0,12,0:0:0:12,0:420,0:-38.134,-3.61236,0,-38.134,-3.61236,-38.134	1/2:73:0,26,47:0:0:26,47:920,1663:-210.392,-135.458,-127.632,-74.9374,0,-60.789	1/2:36:0,16,20:0:0:16,20:569,712:-104.75,-58.3861,-53.5696,-46.7194,0,-40.6988	1/1:22:0,22,0:0:0:22,0:771,0:-69.7104,-6.62266,0,-69.7104,-6.62266,-69.7104	1/2:82:0,40,42:0:0:40,42:1378,1508:-235.291,-123.371,-111.33,-112.271,0,-99.6278	1/1:36:0,36,0:0:0:36,0:1263,0:-113.968,-10.8371,0,-113.968,-10.8371,-113.968	1/2:31:0,10,20:0:0:10,20:336,720:-85.9599,-58.7483,-55.738,-27.1975,0,-21.1769	1/1:79:0,79,0:0:0:79,0:2781,0:-250.312,-23.7814,0,-250.312,-23.7814,-250.312	1/2:52:0,19,32:0:0:19,32:677,1141:-148.296,-93.112,-87.3924,-55.2836,0,-45.6507	1/1:93:0,93,0:0:0:93,0:3265,0:-294.009,-27.9958,0,-294.009,-27.9958,-294.009	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:65:0,26,39:0:0:26,39:908,1400:-188.411,-114.559,-106.732,-74.2052,0,-62.4651	1/2:11:0,6,5:0:0:6,5:211,180:-32.2181,-15.0469,-13.2407,-17.5273,0,-16.0221	1/1:8:0,8,0:0:0:8,0:281,0:-25.6302,-2.40824,0,-25.6302,-2.40824,-25.6302	1/1:36:0,36,0:0:0:36,0:1270,0:-114.602,-10.8371,0,-114.602,-10.8371,-114.602	1/1:5:0,5,0:0:0:5,0:179,0:-16.4604,-1.50515,0,-16.4604,-1.50515,-16.4604	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:13:0,8,5:0:0:8,5:274,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chr04	2978097	.	A	G	30495.2	PASS	AB=0.699625;ABP=832.689;AC=46;AF=0.247312;AN=186;AO=1681;CIGAR=1X;DP=3973;DPB=3973;DPRA=1.69538;EPP=3584.1;EPPR=4889.2;GTI=12;LEN=1;MEANALT=1.02174;MQM=59.9631;MQMR=59.9721;NS=93;NUMALT=1;ODDS=0.286908;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59825;QR=81905;RO=2290;RPL=8;RPP=3584.1;RPPR=4880.6;RPR=1673;RUN=1;SAF=0;SAP=3653.26;SAR=1681;SRF=1;SRP=4967;SRR=2289;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:4,22:4:144:22:778:-62.514,0,-5.48684	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:79:78,1:78:2800:1:36:0,-20.1831,-248.641	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:49:10,39:10:360:39:1404:-111.909,0,-17.9938	0/0:30:30,0:30:1053:0:0:0,-9.0309,-95.0704	0/1:31:5,26:5:176:26:924:-74.1457,0,-6.85309	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:28:9,19:9:324:19:672:-52.378,0,-21.077	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:33:13,20:13:468:20:720:-55.1948,0,-32.5257	0/1:33:14,19:14:500:19:675:-51.143,0,-35.4022	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:17:9,8:9:305:8:275:-19.966,0,-22.6597	0/1:120:30,90:30:1072:90:3224:-254.258,0,-60.6689	0/1:65:22,43:22:792:43:1501:-115.813,0,-52.0387	0/1:104:18,86:18:644:86:3052:-243.601,0,-26.9835	0/1:55:15,40:15:536:40:1426:-112.08,0,-32.0182	0/1:15:11,4:11:392:4:140:-8.42913,0,-31.1046	0/1:55:16,39:16:576:39:1388:-108.662,0,-35.6183	0/1:173:36,137:36:1292:137:4850:-384.576,0,-64.5056	0/1:117:37,80:37:1316:80:2861:-222.505,0,-83.5213	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/1:167:54,113:54:1936:113:4015:-311.263,0,-124.244	0/1:75:24,51:24:864:51:1828:-142.224,0,-54.6447	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:20:9,11:9:324:11:387:-29.1453,0,-23.4853	0/0:94:94,0:94:3350:0:0:0,-28.2968,-301.717	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:91:18,73:18:640:73:2620:-208.598,0,-30.5356	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:83:29,54:29:1025:54:1928:-148.811,0,-67.5752	0/1:21:9,12:9:324:12:428:-32.5372,0,-23.1842	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:57:14,42:14:496:42:1504:-118.545,0,-27.8598	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:101:40,61:40:1440:61:2175:-165.612,0,-99.4937	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:65:15,50:15:536:50:1756:-138.754,0,-29.0079	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:75:30,45:30:1080:45:1608:-122.427,0,-74.936	0/1:39:22,17:22:788:17:597:-42.3168,0,-59.5046	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:48:48,0:48:1694:0:0:0,-14.4494,-152.742	0/1:68:25,43:25:900:43:1540:-118.423,0,-60.851	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:82:19,63:19:684:63:2252:-178.258,0,-37.2059	0/1:26:7,19:7:252:19:680:-53.7024,0,-15.2022	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/1:100:25,75:25:900:75:2639:-207.652,0,-51.218	0/1:108:33,75:33:1172:75:2674:-208.383,0,-73.2763	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3333	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:42:41,0:41:1472:0:0:0,-12.3422,-132.416	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.11	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:55:13,42:13:468:42:1476:-116.575,0,-25.903	0/1:41:11,30:11:396:30:1076:-84.8106,0,-23.6405	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:21:6,15:6:216:15:531:-41.8003,0,-13.4689	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:19:7,12:7:244:12:432:-33.5016,0,-16.5799	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:67:30,37:30:1071:37:1313:-98.3015,0,-76.5326	0/1:40:16,24:16:572:24:864:-66.0414,0,-39.7722	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.401	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.78
chr04	2978109	.	G	A	30401.4	PASS	AB=0.692623;ABP=789.368;AC=46;AF=0.247312;AN=186;AO=1694;CIGAR=1X;DP=4058;DPB=4058;DPRA=1.67762;EPP=3681.48;EPPR=5108.18;GTI=12;LEN=1;MEANALT=1.02174;MQM=59.9268;MQMR=59.9733;NS=93;NUMALT=1;ODDS=0.645494;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60449;QR=84608;RO=2363;RPL=1694;RPP=3681.48;RPPR=5116.84;RPR=0;RUN=1;SAF=0;SAP=3681.48;SAR=1694;SRF=1;SRP=5125.52;SRR=2362;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:4,20:4:144:20:712:-57.1819,0,-6.0889	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/0:79:78,1:78:2781:1:36:0,-20.1831,-246.931	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:50:11,39:11:396:39:1396:-110.888,0,-20.9312	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2666	0/1:32:5,27:5:180:27:972:-78.1649,0,-6.9191	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:61:61,0:61:2170:0:0:0,-18.3628,-195.565	0/1:30:10,20:10:352:20:716:-54.4561,0,-22.8994	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:34:13,21:13:468:21:748:-57.4103,0,-32.2246	0/1:33:14,19:14:504:19:684:-51.9563,0,-35.7641	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:18:10,8:10:351:8:277:-19.8466,0,-26.5071	0/1:122:30,92:30:1076:92:3304:-260.852,0,-60.4272	0/1:69:23,46:23:828:46:1641:-127.16,0,-54.073	0/1:107:21,86:21:752:86:3048:-242.336,0,-35.796	0/1:54:15,39:15:540:39:1385:-108.691,0,-32.6809	0/1:15:11,4:11:388:4:144:-8.79817,0,-30.7419	0/1:55:16,39:16:576:39:1400:-109.743,0,-35.6183	0/1:178:40,138:40:1436:138:4922:-389.545,0,-75.9543	0/1:118:38,80:38:1360:80:2841:-220.406,0,-87.1791	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:174:56,118:56:2007:118:4203:-326.069,0,-128.523	0/1:76:24,52:24:864:52:1864:-145.161,0,-55.0464	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:21:10,11:10:345:11:392:-29.2984,0,-25.0592	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:23:23,0:23:810:0:0:0,-6.92369,-73.219	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:91:18,73:18:648:73:2585:-205.481,0,-31.2582	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:86:32,54:32:1144:54:1921:-147.277,0,-77.3809	0/1:21:9,12:9:320:12:432:-32.8996,0,-22.8207	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:55:14,41:14:504:41:1460:-115.139,0,-29.1414	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:100:41,58:41:1468:58:2053:-154.995,0,-102.371	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:65:16,49:16:553:49:1741:-137.405,0,-30.5271	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:77:33,44:33:1179:44:1565:-117.96,0,-83.2379	0/1:40:22,18:22:792:18:648:-46.6107,0,-59.5645	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:69:26,43:26:936:43:1544:-118.482,0,-63.7884	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:86:20,66:20:716:66:2368:-187.489,0,-38.8791	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.5032	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/1:102:26,76:26:928:76:2680:-210.737,0,-53.1332	0/1:110:33,77:33:1184:77:2751:-214.706,0,-73.755	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/1:55:13,42:13:468:42:1508:-119.458,0,-25.903	0/1:44:13,31:13:464:31:1112:-87.146,0,-28.8522	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:52:52,0:52:1846:0:0:0,-15.6536,-166.419	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:19:6,13:6:212:13:468:-36.7401,0,-13.7052	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:68:31,37:31:1116:37:1328:-99.3522,0,-80.2817	0/1:42:17,25:17:612:25:900:-68.6778,0,-42.7702	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.181	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37
chr04	2986654	.	G	T	34189.8	PASS	AB=0.486455;ABP=9.83406;AC=45;AF=0.239362;AN=188;AO=2098;CIGAR=1X;DP=9370;DPB=9370;DPRA=1.01824;EPP=4558.76;EPPR=15778.8;GTI=1;LEN=1;MEANALT=1.04167;MQM=59.9905;MQMR=59.9831;NS=94;NUMALT=1;ODDS=0.838373;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74353;QR=258386;RO=7269;RPL=0;RPP=4558.76;RPPR=15778.8;RPR=2098;RUN=1;SAF=0;SAP=4558.76;SAR=2098;SRF=0;SRP=15787.4;SRR=7269;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:19,17:19:669:17:593:-42.8576,0,-49.6969	0/0:126:125,1:125:4426:1:36:0,-34.3315,-394.885	0/0:265:264,0:264:9376:0:0:0,-79.4719,-843.447	0/0:207:207,0:207:7382:0:0:0,-62.3132,-664.43	0/0:78:77,1:77:2752:1:36:0,-19.8821,-244.324	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/1:179:73,106:73:2607:106:3760:-284.719,0,-180.993	0/0:131:131,0:131:4656:0:0:0,-39.4349,-419.197	0/1:47:16,31:16:544:31:1108:-85.8826,0,-35.1313	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:66:66,0:66:2338:0:0:0,-19.868,-210.679	0/1:62:32,30:32:1130:30:1060:-77.0474,0,-83.3431	0/0:61:61,0:61:2159:0:0:0,-18.3628,-194.577	0/1:52:29,23:29:1021:23:824:-58.8298,0,-76.5467	0/1:46:22,24:22:775:24:848:-62.7923,0,-56.2238	0/0:80:79,1:79:2815:1:36:0,-20.4841,-249.991	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.897	0/1:35:19,16:19:680:16:572:-41.2774,0,-50.9931	0/1:237:113,124:113:4041:124:4395:-324.382,0,-292.532	0/1:199:98,101:98:3481:101:3574:-261.964,0,-253.597	0/1:155:59,96:59:2108:96:3344:-254.519,0,-143.33	0/1:31:19,12:19:665:12:432:-29.8893,0,-50.8409	0/0:113:108,5:108:3802:5:176:0,-17.8314,-326.193	0/1:80:52,28:52:1842:28:970:-63.5253,0,-141.976	0/1:274:156,118:156:5582:118:4169:-292.913,0,-420.02	0/1:229:129,100:129:4575:100:3510:-247.175,0,-342.978	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/1:365:193,172:193:6845:172:6114:-440.487,0,-506.245	0/1:99:49,50:49:1747:50:1776:-130.32,0,-127.712	0/0:142:142,0:142:5064:0:0:0,-42.7463,-455.904	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:24:17,7:17:612:7:252:-15.8042,0,-48.1887	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:246:246,0:246:8766:0:0:0,-74.0534,-788.931	0/0:181:181,0:181:6447:0:0:0,-54.4864,-580.317	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.056	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:145:73,72:73:2607:72:2546:-185.739,0,-191.228	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.272	0/1:134:70,64:70:2462:64:2264:-163.682,0,-181.492	0/1:64:23,41:23:805:41:1472:-113.51,0,-53.5016	0/0:70:70,0:70:2490:0:0:0,-21.0721,-224.352	0/1:118:57,61:57:2035:61:2150:-158.243,0,-147.9	0/0:135:135,0:135:4810:0:0:0,-40.639,-433.057	0/1:183:99,84:99:3547:84:3000:-215.144,0,-264.349	0/0:140:140,0:140:4930:0:0:0,-42.1442,-443.833	0/1:124:58,66:58:2051:66:2348:-174.252,0,-147.531	0/0:179:179,0:179:6419:0:0:0,-53.8844,-577.796	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:191:101,90:101:3616:90:3196:-230.368,0,-268.149	0/1:32:11,21:11:381:21:748:-58.0123,0,-24.9877	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:128:128,0:128:4553:0:0:0,-38.5318,-409.937	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:135:82,53:82:2893:53:1873:-128.209,0,-219.968	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/0:173:173,0:173:6148:0:0:0,-52.0782,-553.42	0/1:162:84,78:84:2992:78:2784:-202.025,0,-220.743	0/1:46:26,20:26:920:20:712:-50.5593,0,-69.2697	0/0:117:117,0:117:4181:0:0:0,-35.2205,-376.471	0/1:169:85,83:85:3013:83:2952:-214.982,0,-220.424	0/1:25:10,15:10:356:15:540:-41.4084,0,-24.8555	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/0:104:104,0:104:3687:0:0:0,-31.3071,-332.033	0/0:79:79,0:79:2811:0:0:0,-23.7814,-253.23	0/1:21:9,12:9:320:12:428:-32.5372,0,-22.8207	0/0:142:142,0:142:5059:0:0:0,-42.7463,-455.457	0/1:40:23,17:23:819:17:585:-40.9307,0,-61.9904	0/0:146:146,0:146:5127:0:0:0,-43.9504,-461.573	0/0:222:222,0:222:7894:0:0:0,-66.8287,-710.487	0/1:147:82,65:82:2916:65:2320:-164.809,0,-218.422	0/1:93:55,38:55:1939:38:1332:-92.1812,0,-146.629	1/1:6:0,5:0:0:5:180:-16.1922,-1.50515,0	0/0:123:123,0:123:4385:0:0:0,-37.0267,-394.823	0/0:167:167,0:167:5902:0:0:0,-50.272,-531.288	0/0:202:202,0:202:7162:0:0:0,-60.8081,-644.639	0/0:104:104,0:104:3723:0:0:0,-31.3071,-335.271	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:67:35,32:35:1243:32:1124:-81.2984,0,-92.0049	0/0:129:129,0:129:4578:0:0:0,-38.8329,-412.186	0/1:48:28,20:28:1000:20:720:-50.6793,0,-75.8659	0/0:93:93,0:93:3305:0:0:0,-27.9958,-297.669	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:33:33,0:33:1154:0:0:0,-9.93399,-104.165	0/1:91:52,39:52:1827:39:1396:-98.5454,0,-137.314	0/1:65:28,37:28:1008:37:1306:-98.2737,0,-71.4694	0/0:141:140,1:140:4983:1:36:0,-38.847,-445.02	0/0:94:94,0:94:3338:0:0:0,-28.2968,-300.638
chr04	2986696	.	T	C	155270	PASS	AB=0.513164;ABP=9.52773;AC=144;AF=0.774194;AN=186;AO=7318;CIGAR=1X;DP=9438;DPB=9438;DPRA=0;EPP=15893.8;EPPR=4604.36;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.9802;MQMR=59.9934;NS=93;NUMALT=1;ODDS=5.15102;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261216;QR=74631;RO=2119;RPL=7318;RPP=15893.8;RPPR=4604.36;RPR=0;RUN=1;SAF=0;SAP=15893.8;SAR=7318;SRF=0;SRP=4604.36;SRR=2119;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:16,19:16:561:19:680:-50.9931,0,-40.2811	1/1:122:2,120:2:72:120:4224:-373.496,-29.8889,0	1/1:266:1,265:1:32:265:9413:-843.933,-76.8747,0	1/1:210:0,210:0:0:210:7495:-674.59,-63.2163,0	1/1:80:1,79:1:36:79:2828:-251.152,-20.4841,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:181:105,76:105:3655:76:2713:-189.926,0,-274.672	1/1:131:0,131:0:0:131:4649:-418.573,-39.4349,0	0/1:46:30,16:30:1072:16:576:-38.3276,0,-82.9451	1/1:105:0,105:0:0:105:3768:-339.318,-31.6082,0	1/1:53:0,53:0:0:53:1889:-170.288,-15.9546,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:62:30,32:30:1064:32:1144:-84.6057,0,-77.4078	1/1:61:0,61:0:0:61:2160:-194.665,-18.3628,0	0/1:51:23,28:23:816:28:1008:-75.6838,0,-58.4092	0/1:46:24,22:24:856:22:792:-57.7583,0,-63.5137	1/1:83:1,82:1:36:82:2932:-260.516,-21.3872,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:35:16,19:16:572:19:684:-51.3543,0,-41.2774	0/1:247:133,114:133:4611:114:4070:-292.129,0,-340.811	0/1:202:101,101:101:3581:101:3612:-264.478,0,-261.69	0/1:155:94,61:94:3310:61:2192:-150.886,0,-251.46	0/1:34:15,19:15:540:19:669:-50.2989,0,-38.7015	1/1:114:5,109:5:172:109:3894:-334.834,-18.4994,0	0/1:81:28,53:28:996:53:1900:-146.894,0,-65.5715	0/1:281:121,160:121:4274:160:5721:-430.417,0,-300.251	0/1:231:100,131:100:3457:131:4675:-351.371,0,-241.806	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:369:172,197:172:6081:197:6997:-518.712,0,-436.32	0/1:103:52,51:52:1815:51:1802:-131.345,0,-132.619	1/1:141:0,141:0:0:141:5054:-455.003,-42.4452,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:24:6,18:6:208:18:640:-50.7046,0,-11.8344	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	1/1:248:0,248:0:0:248:8882:-799.361,-74.6554,0	1/1:181:0,181:0:0:181:6458:-581.305,-54.4864,0	1/1:68:0,68:0:0:68:2437:-219.554,-20.47,0	.:.:.:.:.:.:.:.	0/1:144:72,72:72:2483:72:2584:-189.46,0,-180.374	1/1:35:0,35:0:0:35:1251:-112.895,-10.5361,0	0/1:139:66,73:66:2314:73:2589:-191.415,0,-166.675	0/1:63:40,23:40:1436:23:828:-55.8792,0,-110.573	1/1:72:0,72:0:0:72:2569:-231.458,-21.6742,0	0/1:118:61,57:61:2164:57:2036:-147.99,0,-159.506	1/1:136:0,136:0:0:136:4869:-438.361,-40.9401,0	0/1:185:85,100:85:3013:100:3569:-265.724,0,-215.711	1/1:141:0,141:0:0:141:5017:-451.676,-42.4452,0	0/1:126:67,59:67:2343:59:2112:-152.419,0,-173.196	1/1:184:0,184:0:0:184:6556:-590.118,-55.3895,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:191:91,100:91:3221:100:3584:-265.27,0,-232.617	0/1:33:22,11:22:758:11:392:-25.6861,0,-58.6002	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:126:0,126:0:0:126:4490:-404.267,-37.9298,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:16:11,5:11:392:5:180:-11.7356,0,-30.8036	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	0/1:132:53,79:53:1877:79:2832:-215.383,0,-129.471	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:176:0,176:0:0:176:6294:-566.552,-52.9813,0	0/1:164:79,85:79:2759:85:3018:-222.479,0,-199.181	0/1:48:21,27:21:740:27:964:-72.6274,0,-52.4739	1/1:119:0,119:0:0:119:4230:-380.879,-35.8226,0	0/1:169:83,86:83:2922:86:3056:-224.381,0,-212.34	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0467	1/1:16:0,16:0:0:16:552:-50.0029,-4.81648,0	1/1:103:0,103:0:0:103:3677:-331.132,-31.0061,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	1/1:143:0,143:0:0:143:5085:-457.796,-43.0473,0	0/1:42:17,25:17:604:25:900:-68.6778,0,-42.0473	1/1:147:0,147:0:0:147:5231:-470.926,-44.2514,0	1/1:221:0,221:0:0:221:7910:-711.921,-66.5276,0	0/1:145:65,80:65:2336:80:2842:-212.366,0,-166.85	0/1:92:38,54:38:1318:54:1925:-145.203,0,-91.2206	0/1:7:6,1:6:216:1:32:-1.0921,0,-17.6833	1/1:128:0,128:0:0:128:4575:-411.915,-38.5318,0	1/1:172:0,172:0:0:172:6135:-552.251,-51.7772,0	1/1:202:0,202:0:0:202:7192:-647.335,-60.8081,0	1/1:104:0,104:0:0:104:3720:-335,-31.3071,0	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	0/1:69:33,36:33:1172:36:1296:-96.1729,0,-85.0164	1/1:132:0,132:0:0:132:4698:-422.981,-39.736,0	0/1:48:20,28:20:705:28:1007:-76.4969,0,-49.3233	1/1:92:0,92:0:0:92:3289:-296.228,-27.6948,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:32:0,31:0:0:31:1116:-100.392,-9.33193,0	0/1:89:39,50:39:1404:50:1796:-135.131,0,-99.8676	0/1:65:37,28:37:1309:28:1004:-71.1089,0,-98.5403	1/1:141:1,140:1:36:140:4986:-445.29,-38.847,0	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0
chr04	2986954	.	T	C	73429.4	PASS	AB=0.491252;ABP=8.89918;AC=45;AF=0.239362;AN=188;AO=4360;CIGAR=1X;DP=17757;DPB=17757;DPRA=1.18832;EPP=9470.63;EPPR=29079;GTI=1;LEN=1;MEANALT=1.1;MQM=59.7791;MQMR=59.9723;NS=94;NUMALT=1;ODDS=8.70916;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155788;QR=479907;RO=13390;RPL=4360;RPP=9470.63;RPPR=29079;RPR=0;RUN=1;SAF=0;SAP=9470.63;SAR=4360;SRF=0;SRP=29079;SRR=13390;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:157:157,0:157:5636:0:0:0,-47.2617,-507.358	0/0:119:119,0:119:4249:0:0:0,-35.8226,-382.588	0/0:121:121,0:121:4352:0:0:0,-36.4246,-391.853	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:94:57,37:57:2048:37:1324:-91.1604,0,-156.295	0/0:194:193,1:193:6924:1:36:0,-54.8264,-619.651	0/1:45:28,17:28:1008:17:612:-41.8662,0,-77.49	0/0:123:123,0:123:4404:0:0:0,-37.0267,-396.53	0/0:416:416,0:416:14952:0:0:0,-125.228,-1345.18	0/0:74:74,0:74:2625:0:0:0,-22.2762,-236.497	0/1:69:30,39:30:1076:39:1400:-105.525,0,-76.3818	0/0:62:61,1:61:2192:1:36:0,-15.0656,-193.947	0/1:57:25,31:25:896:31:1103:-82.3624,0,-63.7429	0/1:66:34,32:34:1216:32:1148:-83.7619,0,-89.8786	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.237	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:204:116,88:116:4172:88:3152:-222.475,0,-314.25	0/1:108:47,61:47:1662:61:2188:-164.672,0,-117.352	0/1:114:61,53:61:2177:53:1908:-137.607,0,-161.877	0/1:119:35,83:35:1260:83:2968:-231.468,0,-77.8241	0/1:60:30,30:30:1065:30:1076:-79.0687,0,-78.098	0/1:97:88,9:88:3152:9:324:-0.304388,0,-254.705	0/1:87:50,37:50:1773:37:1328:-93.6326,0,-133.662	0/1:219:103,116:103:3696:116:4152:-307.912,0,-266.916	0/1:210:104,106:104:3732:106:3796:-278.619,0,-272.864	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:242:116,126:116:4172:126:4509:-332.997,0,-302.811	0/1:172:93,79:93:3340:79:2815:-201.805,0,-249.039	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.593	0/1:992:507,485:507:18177:485:17358:-1263.19,0,-1336.89	0/1:515:298,217:298:10649:217:7696:-537.627,0,-802.841	0/0:980:980,0:980:35137:0:0:0,-295.009,-3161.16	0/0:970:968,2:968:34737:2:72:0,-285.163,-3118.32	0/1:534:286,248:286:10225:248:8880:-638.101,0,-759.428	0/0:156:156,0:156:5572:0:0:0,-46.9607,-501.594	0/0:193:193,0:193:6898:0:0:0,-58.0988,-620.878	0/0:393:393,0:393:14104:0:0:0,-118.305,-1269.06	0/1:310:165,145:165:5916:145:5161:-371.129,0,-439.227	0/1:77:34,43:34:1216:43:1536:-115.347,0,-86.5673	0/0:199:199,0:199:7148:0:0:0,-59.905,-643.374	0/1:92:45,47:45:1616:47:1684:-124.148,0,-118.035	0/1:73:40,33:40:1428:33:1179:-84.4397,0,-106.842	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:59:29,30:29:1036:30:1076:-79.3921,0,-75.7927	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/1:160:76,84:76:2732:84:2985:-220.694,0,-197.957	0/0:109:109,0:109:3900:0:0:0,-32.8123,-351.194	0/1:142:81,61:81:2908:61:2188:-154.435,0,-219.209	0/0:126:126,0:126:4483:0:0:0,-37.9298,-403.635	0/1:611:302,309:302:10837:309:11052:-810.153,0,-791.295	0/1:137:77,59:77:2764:59:2124:-150.145,0,-207.741	0/1:30:9,21:9:324:21:740:-57.8353,0,-20.475	0/0:751:751,0:751:26948:0:0:0,-226.074,-2424.43	0/0:78:78,0:78:2800:0:0:0,-23.4803,-251.463	0/0:33:32,1:32:1137:1:36:0,-6.33571,-99.0387	0/0:677:677,0:677:24218:0:0:0,-203.797,-2178.95	0/1:639:336,303:336:12026:303:10815:-780.689,0,-889.818	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/1:87:44,43:44:1584:43:1531:-111.888,0,-116.662	0/0:329:329,0:329:11759:0:0:0,-99.0389,-1058.17	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.382	0/1:176:100,76:100:3580:76:2720:-192.016,0,-269.426	0/1:51:31,20:31:1116:20:716:-49.4152,0,-85.3992	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:133:68,65:68:2444:65:2314:-168.475,0,-180.178	0/1:88:32,56:32:1144:56:2012:-154.845,0,-76.7789	0/0:273:273,0:273:9761:0:0:0,-82.1812,-878.436	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:84:81,3:81:2904:3:108:0,-15.2113,-251.497	0/1:434:191,243:191:6852:243:8641:-647.02,0,-486.101	0/0:97:97,0:97:3465:0:0:0,-29.1999,-312.061	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:157:156,0:156:5593:0:0:0,-46.9607,-503.13	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:91:42,49:42:1504:49:1747:-130.116,0,-108.261	0/1:124:52,72:52:1859:72:2580:-195.118,0,-130.261	0/1:429:211,217:211:7561:217:7719:-565.52,0,-551.326	0/0:102:101,0:101:3632:0:0:0,-30.404,-326.662	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:78:34,44:34:1220:44:1576:-118.644,0,-86.6265	0/0:163:163,0:163:5852:0:0:0,-49.0679,-526.79	0/1:37:21,16:21:756:16:568:-40.3119,0,-57.2291	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:358:358,0:358:12851:0:0:0,-107.769,-1156.4	0/1:707:343,363:343:12317:363:12992:-956.093,0,-895.468	0/1:66:25,41:25:900:41:1459:-111.735,0,-61.453	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.451
chr04	3004096	.	TGCCC	TGCCT	114808	PASS	AB=0.490595;ABP=5.50184;AC=141;AF=0.766304;AN=184;AO=5428;CIGAR=4M1X;DP=7139;DPB=7146.4;DPRA=0;EPP=11789.8;EPPR=3605.48;GTI=1;LEN=1;MEANALT=1.44565;MQM=59.9808;MQMR=59.994;NS=92;NUMALT=1;ODDS=3.13986;PAIRED=0;PAIREDR=0;PAO=11;PQA=382;PQR=208;PRO=14;QA=193908;QR=58336;RO=1659;RPL=0;RPP=11789.8;RPPR=3605.48;RPR=5428;RUN=1;SAF=5428;SAP=11789.8;SAR=0;SRF=1659;SRP=3605.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:2,17:2:66:17:604:-48.7726,0,-0.293802	1/1:100:0,99:0:0:99:3552:-319.617,-29.802,0	1/1:114:0,114:0:0:114:4054:-364.806,-34.3174,0	1/1:102:2,100:2:65:100:3568:-315.155,-24.5316,0	1/1:19:0,18:0:0:18:648:-58.3296,-5.41854,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:90:30,60:30:1022:60:2121:-164.065,0,-65.1918	1/1:117:0,117:0:0:117:4192:-377.461,-35.2205,0	0/1:113:61,52:61:2128:52:1852:-132.944,0,-157.771	1/1:95:0,94:0:0:94:3368:-303.025,-28.2968,0	1/1:83:0,82:0:0:82:2940:-264.474,-24.6845,0	1/1:103:0,103:0:0:103:3680:-331.341,-31.0061,0	0/1:87:46,41:46:1627:41:1449:-104.514,0,-120.528	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	0/1:82:43,38:43:1528:38:1352:-97.2187,0,-113.07	0/1:75:38,37:38:1353:37:1324:-96.8848,0,-99.4932	1/1:117:0,116:0:0:116:4137:-372.146,-34.9195,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:30:18,12:18:630:12:432:-30.1903,0,-47.9937	0/1:113:50,63:50:1754:63:2233:-167.216,0,-124.126	0/1:146:75,71:75:2642:71:2536:-184.541,0,-194.078	0/1:50:35,14:35:1239:14:500:-30.2261,0,-96.7044	0/1:98:52,46:52:1833:46:1633:-117.756,0,-135.75	1/1:116:3,113:3:97:113:4056:-356.153,-25.8687,0	0/1:39:23,16:23:816:16:572:-40.0169,0,-61.964	0/1:166:97,69:97:3391:69:2449:-170.693,0,-255.44	0/1:164:79,85:79:2753:85:3029:-223.471,0,-198.644	1/1:46:1,43:1:35:43:1544:-135.748,-10.0999,0	0/1:174:89,84:89:3139:84:3004:-218.134,0,-230.28	0/1:100:45,55:45:1599:55:1964:-146.932,0,-114.098	1/1:94:0,93:0:0:93:3309:-297.693,-27.9958,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:15:8,7:8:283:7:252:-18.5135,0,-21.2971	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:202:0,199:0:0:199:7127:-641.126,-59.905,0	1/1:94:1,93:1:31:93:3305:-294.571,-25.1974,0	1/1:67:0,66:0:0:66:2360:-212.299,-19.868,0	.:.:.:.:.:.:.:.	0/1:53:28,25:28:989:25:900:-65.3087,0,-73.3112	1/1:40:2,38:2:66:38:1368:-117.153,-5.77325,0	0/1:52:18,34:18:632:34:1206:-93.1925,0,-41.5516	0/1:84:31,51:31:1099:51:1824:-139.397,0,-74.1759	1/1:71:0,70:0:0:70:2497:-224.621,-21.0721,0	0/1:59:27,32:27:955:32:1144:-85.5087,0,-68.5053	1/1:49:0,45:0:0:45:1604:-144.277,-13.5464,0	0/1:99:50,48:50:1746:48:1701:-123.486,0,-127.589	1/1:58:0,58:0:0:58:2036:-183.509,-17.4597,0	0/1:91:53,37:53:1878:37:1332:-92.7299,0,-141.846	1/1:114:1,112:1:31:112:3992:-356.411,-31.1869,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:75:37,38:37:1301:38:1349:-99.131,0,-94.8136	0/1:23:12,11:12:430:11:396:-29.0591,0,-32.1164	1/1:6:0,6:0:0:6:216:-19.3962,-1.80618,0	1/1:78:0,78:0:0:78:2788:-251.101,-23.4803,0	1/1:28:1,27:1:35:27:968:-83.9387,-4.93021,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:5,2:5:179:2:72:-4.72951,0,-14.3532	1/1:85:0,83:0:0:83:2968:-267.042,-24.9855,0	0/1:125:60,65:60:2115:65:2312:-170.712,0,-152.99	.:.:.:.:.:.:.:.	1/1:55:0,54:0:0:54:1940:-174.516,-16.2556,0	0/1:156:75,81:75:2666:81:2916:-215.649,0,-193.166	0/1:67:27,40:27:956:40:1436:-109.369,0,-66.187	1/1:23:1,20:1:36:20:705:-60.224,-3.05493,0	0/1:94:48,46:48:1649:46:1648:-120.312,0,-120.397	0/1:107:65,41:65:2303:41:1465:-99.8772,0,-175.262	1/1:50:0,50:0:0:50:1792:-161.503,-15.0515,0	1/1:80:1,78:1:36:78:2778:-246.663,-20.5429,0	1/1:130:0,129:0:0:129:4624:-415.962,-38.8329,0	0/1:5:3,2:3:97:2:72:-5.33157,0,-7.54484	1/1:71:0,71:0:0:71:2536:-228.479,-21.3731,0	0/1:79:26,53:26:921:53:1888:-146.417,0,-59.4262	1/1:188:0,187:0:0:187:6666:-599.762,-56.2926,0	1/1:102:0,102:0:0:102:3648:-328.524,-30.7051,0	0/1:31:20,10:20:698:10:360:-23.4534,0,-53.8575	0/1:96:60,36:60:2097:36:1284:-86.9645,0,-160.099	0/1:13:9,4:9:319:4:144:-9.40023,0,-25.138	1/1:85:3,82:3:108:82:2940:-254.759,-15.5124,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:130:0,129:0:0:129:4620:-415.751,-38.8329,0	1/1:87:1,85:1:36:85:3040:-270.242,-22.6402,0	1/1:59:0,58:0:0:58:2069:-186.119,-17.4597,0	0/1:105:54,50:54:1882:50:1777:-128.546,0,-137.989	1/1:157:0,153:0:0:153:5478:-492.818,-46.0576,0	0/1:44:22,22:22:761:22:776:-56.9168,0,-55.563	1/1:113:1,109:1:36:109:3900:-347.596,-29.8749,0	1/1:95:1,93:1:36:93:3321:-295.535,-25.0334,0	1/1:47:0,46:0:0:46:1656:-148.969,-13.8474,0	0/1:96:45,49:45:1602:49:1756:-129.667,0,-115.813	0/1:102:64,38:64:2256:38:1345:-90.5982,0,-172.598	1/1:60:1,59:1:30:59:2112:-187.464,-15.2423,0	1/1:117:0,116:0:0:116:4149:-373.366,-34.9195,0
chr04	3021124	.	C	T	176027	PASS	AB=0.485066;ABP=14.1013;AC=143;AF=0.760638;AN=188;AO=8410;CIGAR=1X;DP=11370;DPB=11370;DPRA=40.7419;EPP=18256.4;EPPR=6428.4;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.992;MQMR=60;NS=94;NUMALT=1;ODDS=4.39418;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=299914;QR=105744;RO=2959;RPL=8410;RPP=18265.1;RPPR=6428.4;RPR=0;RUN=1;SAF=1;SAP=18256.4;SAR=8409;SRF=0;SRP=6428.4;SRR=2959;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:137:84,53:84:3016:53:1904:-130.397,0,-230.429	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:422:0,422:0:0:422:15054:-1354.59,-127.035,0	1/1:230:0,230:0:0:230:8213:-737.646,-69.2369,0	1/1:150:0,150:0:0:150:5330:-479.835,-45.1545,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	0/1:41:19,22:19:676:22:769:-57.1864,0,-48.8258	1/1:140:2,138:2:72:138:4920:-436.117,-35.3075,0	0/1:139:66,73:66:2364:73:2608:-193.125,0,-171.175	1/1:122:0,122:0:0:122:4364:-392.935,-36.7257,0	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	1/1:125:0,125:0:0:125:4468:-402.29,-37.6288,0	0/1:73:33,40:33:1180:40:1436:-107.562,0,-84.5329	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	0/1:69:31,38:31:1112:38:1352:-101.209,0,-79.6203	0/1:82:36,46:36:1273:46:1650:-124.104,0,-90.1865	1/1:44:0,44:0:0:44:1569:-141.5,-13.2453,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:48:22,26:22:792:26:932:-69.7494,0,-57.1562	0/1:228:123,105:123:4389:105:3691:-263.756,0,-326.548	0/1:148:73,75:73:2612:75:2681:-196.982,0,-190.776	0/1:179:131,48:131:4685:48:1705:-99.8495,0,-367.925	0/1:148:67,81:67:2374:81:2904:-217.006,0,-169.363	1/1:107:2,105:2:72:105:3752:-331.044,-25.3735,0	0/1:173:95,78:95:3392:78:2792:-199.442,0,-253.418	0/1:275:142,133:142:5077:133:4760:-345.775,0,-374.29	0/1:362:169,193:169:6060:193:6911:-513.084,0,-436.529	1/1:38:0,38:0:0:38:1349:-121.709,-11.4391,0	0/1:305:166,139:166:5933:139:4968:-355.456,0,-442.263	0/1:171:99,72:99:3556:72:2568:-179.894,0,-268.771	1/1:91:0,91:0:0:91:3245:-292.27,-27.3937,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:41:27,14:27:953:14:495:-32.5414,0,-73.7411	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:33:20,13:20:705:13:464:-32.1635,0,-53.8388	1/1:262:0,262:0:0:262:9377:-843.891,-78.8699,0	1/1:195:0,195:0:0:195:6929:-623.681,-58.7009,0	1/1:65:1,64:1:36:64:2300:-203.662,-15.9687,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:124:61,63:61:2161:63:2222:-162.914,0,-157.428	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:339:184,155:184:6585:155:5552:-397.755,0,-490.68	0/1:67:40,27:40:1432:27:960:-66.5473,0,-109.009	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	0/1:214:110,104:110:3940:104:3690:-267.884,0,-290.371	1/1:211:0,211:0:0:211:7546:-679.178,-63.5173,0	0/1:322:138,184:138:4887:184:6590:-496.248,0,-343.051	1/1:148:0,148:0:0:148:5259:-473.448,-44.5524,0	0/1:146:67,79:67:2408:79:2824:-210.449,0,-173.026	1/1:238:0,238:0:0:238:8471:-762.395,-71.6451,0	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:163:86,77:86:3084:77:2695:-193.724,0,-228.72	0/1:41:19,22:19:684:22:788:-58.9026,0,-49.5481	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:194:0,194:0:0:194:6916:-622.511,-58.3998,0	1/1:57:0,57:0:0:57:2014:-181.53,-17.1587,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:97:0,97:0:0:97:3472:-312.692,-29.1999,0	0/1:124:65,59:65:2336:59:2116:-153.381,0,-173.172	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	1/1:156:0,156:0:0:156:5549:-499.537,-46.9607,0	0/1:204:69,135:69:2461:135:4836:-373.984,0,-160.333	0/1:95:38,57:38:1364:57:2025:-153.923,0,-94.4629	1/1:105:0,105:0:0:105:3719:-334.909,-31.6082,0	0/1:238:114,123:114:4081:123:4393:-323.959,0,-295.889	0/1:212:154,58:154:5498:58:2080:-123.652,0,-431.126	1/1:48:1,47:1:36:47:1680:-147.889,-10.8512,0	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	1/1:42:0,42:0:0:42:1469:-132.502,-12.6433,0	0/1:35:17,18:17:612:18:636:-47.032,0,-44.8774	1/1:185:2,183:2:68:183:6505:-579.081,-49.2328,0	0/1:139:57,82:57:2027:82:2924:-221.552,0,-140.859	1/1:141:0,141:0:0:141:5016:-451.589,-42.4452,0	1/1:160:0,160:0:0:160:5667:-510.151,-48.1648,0	0/1:163:79,84:79:2810:84:2992:-220.445,0,-204.069	0/1:80:46,34:46:1652:34:1212:-85.3039,0,-124.886	0/1:29:19,10:19:680:10:356:-23.6514,0,-52.7993	1/1:110:0,110:0:0:110:3902:-351.373,-33.1133,0	1/1:139:0,139:0:0:139:4976:-447.989,-41.8432,0	1/1:348:1,347:1:36:347:12278:-1101.28,-101.16,0	1/1:65:0,65:0:0:65:2334:-210.319,-19.567,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:38:19,19:19:684:19:680:-50.09,0,-50.4512	1/1:128:0,128:0:0:128:4581:-412.454,-38.5318,0	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	1/1:91:0,91:0:0:91:3241:-291.911,-27.3937,0	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:159:74,85:74:2640:85:3019:-224.076,0,-189.984	0/1:76:51,25:51:1813:25:888:-57.3607,0,-140.571	1/1:122:0,122:0:0:122:4361:-392.661,-36.7257,0	1/1:123:0,123:0:0:123:4400:-396.173,-37.0267,0
chr04	3021145	.	T	A	53980.9	PASS	AB=0.522712;ABP=9.81634;AC=143;AF=0.768817;AN=186;AO=2585;CIGAR=1X;DP=3315;DPB=3315;DPRA=0;EPP=5616.27;EPPR=1581.67;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9636;MQMR=59.934;NS=93;NUMALT=1;ODDS=1.24646;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91495;QR=25910;RO=727;RPL=0;RPP=5616.27;RPPR=1581.67;RPR=2585;RUN=1;SAF=2585;SAP=5616.27;SAR=0;SRF=727;SRP=1581.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	1/1:42:1,41:1:36:41:1464:-128.457,-9.04499,0	1/1:27:0,27:0:0:27:961:-86.8044,-8.12781,0	1/1:59:0,59:0:0:59:2088:-188.191,-17.7608,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:14:0,14:0:0:14:496:-44.8421,-4.21442,0	0/1:37:16,21:16:572:21:744:-56.1462,0,-40.6753	1/1:47:1,46:1:36:46:1603:-140.955,-10.5501,0	0/1:35:17,18:17:599:18:613:-44.9526,0,-43.702	1/1:45:0,45:0:0:45:1558:-140.506,-13.5464,0	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:16:2,14:2:72:14:504:-40.8816,0,-2.02024	1/1:34:0,34:0:0:34:1203:-108.575,-10.235,0	0/1:24:14,10:14:504:10:352:-24.7888,0,-38.4734	0/1:14:8,6:8:284:6:212:-15.2104,0,-21.6889	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/1:31:18,13:18:640:13:464:-32.7656,0,-48.5958	0/1:80:39,41:39:1354:41:1441:-105.901,0,-98.0718	0/1:17:9,8:9:324:8:280:-20.4218,0,-24.3883	0/1:70:46,24:46:1652:24:825:-53.4914,0,-127.896	0/1:43:6,37:6:216:37:1305:-104.805,0,-6.84622	0/1:24:17,7:17:604:7:252:-15.8042,0,-47.4659	0/1:90:28,62:28:1000:62:2186:-169.91,0,-63.2227	0/1:59:21,38:21:752:38:1360:-104.94,0,-50.2455	1/1:17:0,17:0:0:17:589:-53.3333,-5.11751,0	0/1:105:49,56:49:1748:56:1973:-146.237,0,-125.996	0/1:58:34,24:34:1216:24:852:-59.5406,0,-92.2868	1/1:81:0,81:0:0:81:2881:-259.526,-24.3834,0	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	1/1:57:0,57:0:0:57:2016:-181.711,-17.1587,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	.:.:.:.:.:.:.:.	0/1:37:16,20:16:564:20:705:-52.7108,0,-40.0257	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:32:15,17:15:528:17:604:-45.0576,0,-38.2184	0/1:34:14,20:14:504:20:704:-53.4495,0,-35.4631	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	1/1:31:0,31:0:0:31:1099:-99.2183,-9.33193,0	0/1:43:21,22:21:744:22:792:-58.6614,0,-54.34	1/1:36:0,36:0:0:36:1284:-115.236,-10.8371,0	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6017	1/1:56:0,56:0:0:56:1989:-179.282,-16.8577,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:37:17,20:17:604:20:716:-53.6296,0,-43.1225	0/1:22:8,14:8:284:14:500:-38.7135,0,-19.2807	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:39:0,39:0:0:39:1380:-124.498,-11.7402,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	1/1:43:0,43:0:0:43:1517:-136.821,-12.9443,0	0/1:50:18,32:18:648:32:1144:-88.218,0,-43.6004	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:125:0,125:0:0:125:4412:-397.255,-37.6288,0	0/1:55:34,21:34:1205:21:752:-51.4496,0,-92.1972	0/1:26:16,10:16:576:10:356:-24.5545,0,-44.3482	1/1:24:0,24:0:0:24:848:-76.6397,-7.22472,0	0/1:138:70,68:70:2493:68:2326:-168.051,0,-183.079	0/1:50:38,12:38:1360:12:398:-21.0862,0,-107.649	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:31:0,31:0:0:31:1101:-99.3975,-9.33193,0	1/1:22:0,21:0:0:21:743:-66.8338,-6.32163,0	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	1/1:51:0,51:0:0:51:1805:-162.73,-15.3525,0	0/1:34:19,15:19:671:15:540:-38.7015,0,-50.4808	1/1:115:0,115:0:0:115:4053:-364.96,-34.6185,0	1/1:75:0,75:0:0:75:2669:-240.454,-22.5773,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:57:27,30:27:964:30:1072:-79.6337,0,-69.9181	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:40:1,39:1:36:39:1396:-122.341,-8.44293,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:94:0,94:0:0:94:3326:-299.557,-28.2968,0	1/1:57:0,57:0:0:57:2012:-181.339,-17.1587,0	1/1:17:0,16:0:0:16:572:-51.4537,-4.81648,0	0/1:19:7,12:7:252:12:427:-33.0485,0,-17.3094	1/1:56:0,56:0:0:56:1996:-179.914,-16.8577,0	0/1:20:7,13:7:252:13:460:-35.7148,0,-17.0084	1/1:23:0,23:0:0:23:808:-73.0401,-6.92369,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/1:25:11,14:11:396:14:496:-37.4485,0,-28.457	1/1:80:0,80:0:0:80:2853:-257.007,-24.0824,0	1/1:49:0,49:0:0:49:1740:-156.884,-14.7505,0
chr04	3025968	.	T	C	186085	PASS	AB=0.516;ABP=14.6841;AC=145;AF=0.771277;AN=188;AO=8756;CIGAR=1X;DP=11319;DPB=11319;DPRA=0;EPP=19016.4;EPPR=5551.12;GTI=1;LEN=1;MEANALT=1.08511;MQM=59.6494;MQMR=59.9288;NS=94;NUMALT=1;ODDS=1.74441;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313298;QR=91432;RO=2555;RPL=0;RPP=19016.4;RPPR=5551.12;RPR=8756;RUN=1;SAF=8756;SAP=19016.4;SAR=0;SRF=2555;SRP=5551.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:20,19:20:720:19:680:-49.789,0,-53.3886	1/1:240:0,240:0:0:240:8594:-772.643,-72.2472,0	1/1:192:0,192:0:0:192:6871:-618.141,-57.7978,0	1/1:309:1,308:1:36:308:11004:-986.46,-89.42,0	1/1:94:0,94:0:0:94:3367:-303.222,-28.2968,0	1/1:62:0,62:0:0:62:2213:-199.394,-18.6639,0	0/1:193:89,103:89:3181:103:3704:-275.517,0,-228.502	1/1:221:0,221:0:0:221:7875:-708.483,-66.5276,0	0/1:115:51,64:51:1828:64:2283:-171.082,0,-130.094	1/1:169:0,169:0:0:169:6054:-544.934,-50.8741,0	1/1:35:0,35:0:0:35:1252:-112.963,-10.5361,0	1/1:65:0,65:0:0:65:2324:-209.404,-19.567,0	0/1:59:30,29:30:1080:29:1040:-76.1398,0,-79.7491	1/1:67:0,67:0:0:67:2394:-215.703,-20.169,0	0/1:52:26,26:26:917:26:932:-68.5407,0,-67.1773	0/1:48:20,28:20:712:28:1004:-76.2264,0,-49.9572	1/1:64:0,64:0:0:64:2292:-206.492,-19.2659,0	1/1:45:0,45:0:0:45:1616:-145.714,-13.5464,0	0/1:37:21,16:21:756:16:568:-40.3056,0,-57.2291	0/1:303:151,152:151:5420:152:5447:-399.145,0,-396.688	0/1:207:107,100:107:3818:100:3565:-258.744,0,-281.501	0/1:105:71,34:71:2537:34:1216:-78.1384,0,-196.971	0/1:107:47,60:47:1692:60:2133:-159.82,0,-120.356	1/1:182:8,174:8:288:174:6211:-532.535,-28.5201,0	0/1:84:45,39:45:1608:39:1378:-99.0238,0,-119.724	0/1:362:146,216:146:5179:216:7725:-585.609,0,-357.277	0/1:275:127,148:127:4534:148:5296:-393.962,0,-325.441	1/1:48:0,48:0:0:48:1720:-155.069,-14.4494,0	0/1:401:148,253:148:5301:253:9077:-695.993,0,-356.51	0/1:161:76,84:76:2736:84:3020:-223.563,0,-198.104	1/1:217:2,214:2:72:214:7678:-683.622,-58.5456,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:27:11,16:11:392:16:576:-44.0472,0,-27.4922	1/1:7:0,7:0:0:7:252:-22.7984,-2.10721,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.7822,-1.80618,0	1/1:191:0,190:0:0:190:6810:-612.643,-57.1957,0	1/1:179:0,179:0:0:179:6413:-577.219,-53.8844,0	1/1:49:0,49:0:0:49:1726:-155.593,-14.7505,0	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:255:134,121:134:4809:121:4344:-314.353,0,-356.2	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:190:106,83:106:3777:83:2980:-211.277,0,-283.017	0/1:123:53,70:53:1908:70:2516:-188.882,0,-134.926	1/1:61:0,61:0:0:61:2175:-195.952,-18.3628,0	0/1:97:44,52:44:1565:52:1860:-138.56,0,-112.028	1/1:157:0,157:0:0:157:5630:-506.749,-47.2617,0	0/1:220:100,120:100:3565:120:4299:-320.84,0,-254.831	1/1:154:0,154:0:0:154:5506:-494.912,-46.3586,0	0/1:203:86,117:86:3096:117:4185:-315.662,0,-217.735	1/1:238:0,238:0:0:238:8504:-765.329,-71.6451,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:175:87,88:87:3128:88:3137:-229.734,0,-229.047	0/1:32:19,13:19:684:13:468:-32.8258,0,-52.2574	1/1:22:0,22:0:0:22:788:-71.2366,-6.62266,0	1/1:210:2,208:2:72:208:7435:-662.33,-56.3796,0	1/1:47:0,47:0:0:47:1675:-151.008,-14.1484,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:66:0,66:0:0:66:2359:-212.552,-19.868,0	0/1:82:37,45:37:1332:45:1620:-120.953,0,-95.4979	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:313:0,313:0:0:313:11189:-1006.58,-94.2224,0	0/1:269:126,143:126:4516:143:5120:-379.931,0,-325.63	0/1:103:54,49:54:1932:49:1760:-127.664,0,-143.15	1/1:122:0,122:0:0:122:4346:-391.298,-36.7257,0	0/1:193:88,105:88:3129:105:3759:-280.363,0,-223.715	0/1:115:83,32:83:2968:32:1131:-67.4773,0,-232.735	1/1:16:0,16:0:0:16:572:-51.8112,-4.81648,0	1/1:111:0,111:0:0:111:3979:-358.286,-33.4143,0	1/1:78:0,78:0:0:78:2791:-251.315,-23.4803,0	0/1:30:18,12:18:644:12:432:-30.1879,0,-49.2597	1/1:77:0,77:0:0:77:2756:-248.261,-23.1793,0	0/1:64:26,38:26:921:38:1364:-103.795,0,-63.9216	1/1:225:1,224:1:36:224:8034:-719.286,-64.1335,0	1/1:269:0,269:0:0:269:9620:-865.427,-80.9771,0	0/1:75:44,31:44:1580:31:1099:-76.6307,0,-119.827	0/1:128:69,59:69:2480:59:2116:-152.169,0,-184.913	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:197:0,197:0:0:197:7039:-633.554,-59.3029,0	1/1:101:1,100:1:36:100:3572:-317.639,-26.8058,0	1/1:323:1,321:1:32:321:11487:-1029.28,-93.9973,0	1/1:101:2,99:2:72:99:3548:-312.664,-23.5673,0	1/1:60:0,60:0:0:60:2147:-193.476,-18.0618,0	0/1:109:56,53:56:1999:53:1882:-136.845,0,-147.371	1/1:152:0,151:0:0:151:5403:-486.016,-45.4555,0	0/1:48:25,23:25:900:23:824:-60.0339,0,-66.8716	1/1:73:0,73:0:0:73:2612:-235.116,-21.9752,0	1/1:66:0,66:0:0:66:2372:-213.723,-19.868,0	1/1:32:0,32:0:0:32:1148:-103.625,-9.63296,0	0/1:42:19,23:19:676:23:824:-61.8367,0,-48.5247	0/1:87:63,24:63:2264:24:864:-51.8868,0,-177.814	1/1:219:0,219:0:0:219:7821:-703.734,-65.9256,0	1/1:87:0,87:0:0:87:3128:-281.737,-26.1896,0
chr04	3025983	.	A	C	41132.7	PASS	AB=0.48033;ABP=20.5225;AC=43;AF=0.228723;AN=188;AO=2518;CIGAR=1X;DP=11284;DPB=11284;DPRA=1.27669;EPP=5418.79;EPPR=18245.1;GTI=1;LEN=1;MEANALT=1.04082;MQM=59.9102;MQMR=59.6527;NS=94;NUMALT=1;ODDS=1.10955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89035;QR=313934;RO=8761;RPL=2512;RPP=5418.79;RPPR=18245.1;RPR=6;RUN=1;SAF=2518;SAP=5470.78;SAR=0;SRF=8761;SRP=19027.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:20,21:20:720:21:748:-55.3031,0,-52.7865	0/0:238:238,0:238:8560:0:0:0,-71.6451,-769.609	0/0:192:192,0:192:6872:0:0:0,-57.7978,-617.819	0/0:314:313,1:313:11220:1:36:0,-90.9251,-1005.79	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.625	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.215	0/1:194:103,90:103:3692:90:3180:-227.966,0,-273.998	0/0:223:223,0:223:8000:0:0:0,-67.1297,-719.538	0/1:113:64,49:64:2276:49:1747:-123.422,0,-171.029	0/0:170:169,0:169:6045:0:0:0,-50.8741,-543.771	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.683	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.878	0/1:58:29,29:29:1044:29:1023:-74.9207,0,-76.8013	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.144	0/1:49:24,25:24:860:25:858:-62.7794,0,-62.9668	0/1:48:29,19:29:1036:19:680:-47.0797,0,-79.1045	0/0:64:64,0:64:2288:0:0:0,-19.2659,-205.975	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.722	0/1:36:15,21:15:527:21:744:-56.4472,0,-36.9198	0/1:300:150,150:150:5388:150:5323:-388.87,0,-394.74	0/1:208:100,108:100:3592:108:3813:-280.756,0,-260.871	0/1:104:33,71:33:1180:71:2493:-193.313,0,-75.2009	0/1:109:59,50:59:2093:50:1783:-127.939,0,-155.536	0/0:181:173,8:173:6188:8:288:0,-28.219,-530.436	0/1:83:39,44:39:1396:44:1533:-113.272,0,-100.931	0/1:354:217,137:217:7780:137:4859:-330.902,0,-593.014	0/1:274:148,126:148:5312:126:4473:-320.251,0,-395.531	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.588	0/1:405:255,150:255:9148:150:5328:-357.655,0,-701.167	0/1:159:82,77:82:2935:77:2710:-196.278,0,-216.43	0/0:216:214,2:214:7684:2:61:0,-59.2292,-685.391	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/1:26:16,10:16:576:10:356:-24.5545,0,-44.3482	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.6616	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7822	0/0:192:192,0:192:6900:0:0:0,-57.7978,-621.042	0/0:181:181,0:181:6500:0:0:0,-54.4864,-585.038	0/0:50:50,0:50:1771:0:0:0,-15.0515,-159.618	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:256:123,133:123:4397:133:4724:-348.257,0,-318.816	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:188:84,104:84:3020:104:3654:-272.466,0,-215.388	0/1:122:71,51:71:2540:51:1797:-125.282,0,-191.341	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.409	0/1:97:53,44:53:1891:44:1576:-112.932,0,-141.259	0/0:157:157,0:157:5636:0:0:0,-47.2617,-507.267	0/1:213:122,91:122:4372:91:3233:-227.072,0,-329.515	0/0:157:157,0:157:5612:0:0:0,-47.2617,-504.152	0/1:203:117,86:117:4196:86:3054:-213.962,0,-316.652	0/0:238:238,0:238:8544:0:0:0,-71.6451,-768.426	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:174:85,89:85:3056:89:3149:-231.25,0,-222.878	0/1:32:14,18:14:504:18:628:-47.2103,0,-36.0642	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2366	0/0:213:211,2:211:7552:2:72:0,-57.2827,-672.856	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.536	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.362	0/1:80:45,35:45:1612:35:1233:-87.1897,0,-120.835	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:311:311,0:311:11133:0:0:0,-93.6203,-1001.22	0/1:266:142,124:142:5076:124:4412:-317.179,0,-376.882	0/1:99:49,50:49:1760:50:1757:-128.607,0,-128.868	0/0:122:122,0:122:4376:0:0:0,-36.7257,-393.976	0/1:194:103,91:103:3700:91:3179:-227.933,0,-274.713	0/1:112:31,81:31:1112:81:2837:-221.855,0,-66.669	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8112	0/0:112:112,0:112:4032:0:0:0,-33.7154,-363.053	0/0:77:77,0:77:2757:0:0:0,-23.1793,-248.336	0/1:29:12,17:12:428:17:599:-45.5074,0,-30.1266	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.751	0/1:63:38,25:38:1364:25:871:-59.7329,0,-104.096	0/0:224:223,0:223:8008:0:0:0,-67.1297,-720.259	0/0:267:267,0:267:9577:0:0:0,-80.375,-861.449	0/1:77:33,44:33:1180:44:1576:-118.762,0,-83.2987	0/1:129:59,70:59:2103:70:2466:-183.36,0,-150.698	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:192:192,0:192:6896:0:0:0,-57.7978,-620.683	0/0:103:102,1:102:3642:1:32:0,-27.8068,-324.077	0/0:325:324,1:324:11586:1:21:0,-95.7348,-1039.2	0/0:101:101,0:101:3610:0:0:0,-30.404,-325.077	0/0:59:58,0:58:2056:0:0:0,-17.4597,-184.941	0/1:105:51,53:51:1832:53:1887:-138.441,0,-133.494	0/0:153:153,0:153:5467:0:0:0,-46.0576,-492.132	0/1:48:23,25:23:819:25:877:-64.7966,0,-59.5821	0/0:72:72,0:72:2576:0:0:0,-21.6742,-231.977	0/0:65:65,0:65:2322:0:0:0,-19.5669,-209.231	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.265	0/1:43:23,20:23:824:20:697:-50.1054,0,-61.5357	0/1:85:23,62:23:820:62:2200:-172.656,0,-48.5288	0/0:217:217,0:217:7792:0:0:0,-65.3235,-701.12	0/0:88:88,0:88:3151:0:0:0,-26.4906,-283.806
chr04	3026040	.	A	G	9094.77	PASS	AB=0.484444;ABP=11.0496;AC=34;AF=0.180851;AN=188;AO=1871;CIGAR=1X;DP=9386;DPB=9386;DPRA=1.3003;EPP=4065.84;EPPR=16321.6;GTI=3;LEN=1;MEANALT=1;MQM=22.9674;MQMR=26.7914;NS=94;NUMALT=1;ODDS=0.569346;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66586;QR=269478;RO=7515;RPL=1871;RPP=4065.84;RPPR=16321.6;RPR=0;RUN=1;SAF=0;SAP=4065.84;SAR=1871;SRF=0;SRP=16321.6;SRR=7515;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:28,1:28:1000:1:36:0,-6.17116,-56.9169	0/0:105:105,0:105:3732:0:0:0,-31.6081,-222.675	0/0:210:210,0:210:7525:0:0:0,-63.2163,-447.41	0/0:230:229,1:229:8188:1:36:0,-66.958,-558.974	0/0:73:73,0:73:2628:0:0:0,-21.9752,-168.196	0/0:41:41,0:41:1472:0:0:0,-12.3422,-88.7849	0/1:126:88,38:88:3160:38:1348:-41.0305,0,-180.337	0/0:193:193,0:193:6936:0:0:0,-58.0988,-412.862	0/0:48:48,0:48:1724:0:0:0,-14.4494,-102.225	0/0:127:127,0:127:4540:0:0:0,-38.2308,-311.912	0/0:53:53,0:53:1900:0:0:0,-15.9546,-127.972	0/0:65:65,0:65:2331:0:0:0,-19.5669,-139.339	0/0:33:32,1:32:1152:1:36:0,-7.37528,-65.4717	0/0:66:66,0:66:2376:0:0:0,-19.868,-150.894	0/1:51:24,27:24:864:27:972:-40.078,0,-43.8519	0/1:58:30,28:30:1080:28:1008:-35.3309,0,-52.4253	0/0:67:67,0:67:2408:0:0:0,-20.169,-145.859	0/0:33:33,0:33:1188:0:0:0,-9.93399,-70.7739	0/0:11:11,0:11:388:0:0:0,-3.31133,-23.2295	0/1:214:102,112:102:3660:112:3991:-165.203,0,-186.198	0/1:169:77,92:77:2760:92:3240:-122.09,0,-127.838	0/1:93:24,69:24:864:69:2440:-124.993,0,-34.8436	0/1:84:39,45:39:1388:45:1608:-67.5433,0,-71.5483	0/0:92:83,9:83:2976:9:324:0,-10.5848,-176.365	0/1:65:38,27:38:1349:27:968:-31.3281,0,-67.1239	0/1:338:163,175:163:5843:175:6236:-285.978,0,-315.583	0/1:298:166,132:166:5952:132:4675:-158.599,0,-290.271	0/0:48:48,0:48:1728:0:0:0,-14.4494,-109.856	0/1:362:197,165:197:7056:165:5900:-257.968,0,-399.916	0/1:99:59,40:59:2120:40:1436:-46.0924,0,-105.727	0/0:76:76,0:76:2724:0:0:0,-22.8783,-186.304	0/1:6:5,1:5:180:1:36:-0.280405,0,-11.3324	0/1:15:5,10:5:180:10:356:-14.4547,0,-7.2546	0/0:3:3,0:3:108:0:0:0,-0.90309,-6.64588	0/0:7:7,0:7:243:0:0:0,-2.10721,-15.054	0/0:5:5,0:5:176:0:0:0,-1.50515,-10.884	0/0:217:216,1:216:7743:1:36:0,-63.5302,-556.428	0/0:149:149,0:149:5352:0:0:0,-44.8535,-344.317	0/0:71:71,0:71:2548:0:0:0,-21.3731,-152.45	0/1:10:4,6:4:144:6:216:-8.46592,0,-6.45691	0/1:141:79,62:79:2836:62:2205:-74.47,0,-139.747	0/0:22:22,0:22:792:0:0:0,-6.62266,-51.3283	0/1:122:68,54:68:2448:54:1917:-64.5804,0,-119.455	0/1:78:33,45:33:1188:45:1620:-68.6946,0,-58.8346	0/0:60:60,0:60:2156:0:0:0,-18.0618,-147.209	0/1:110:60,50:60:2148:50:1796:-77.5166,0,-125.445	0/0:169:169,0:169:6072:0:0:0,-50.8741,-360.345	0/1:224:124,100:124:4444:100:3576:-137.049,0,-236.052	0/0:131:131,0:131:4693:0:0:0,-39.4349,-319.648	0/1:167:96,71:96:3435:71:2516:-94.7933,0,-185.306	0/0:176:176,0:176:6320:0:0:0,-52.9813,-452.006	1/1:2:0,2:0:0:2:72:-4.32984,-0.60206,0	0/0:91:89,2:89:3188:2:68:0,-22.2584,-187.301	0/1:69:31,38:31:1116:38:1336:-62.7072,0,-60.055	0/0:10:10,0:10:360:0:0:0,-3.0103,-21.4259	0/0:197:197,0:197:7067:0:0:0,-59.3029,-450.329	0/0:62:62,0:62:2220:0:0:0,-18.6639,-152.386	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.1995	0/1:5:3,2:3:108:2:72:-3.18197,0,-5.80899	0/0:59:59,0:59:2111:0:0:0,-17.7608,-134.024	0/1:109:60,49:60:2148:49:1740:-67.4037,0,-112.327	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.19878	0/0:226:226,0:226:8124:0:0:0,-68.0328,-575.525	0/1:197:112,85:112:4008:85:3027:-115.242,0,-213.528	0/1:78:42,36:42:1512:36:1296:-44.9201,0,-73.3275	0/0:120:120,0:120:4312:0:0:0,-36.1236,-295.227	0/1:137:74,63:74:2664:63:2203:-86.7225,0,-140.093	0/1:154:41,113:41:1468:113:4010:-183.75,0,-53.2968	0/0:44:44,0:44:1584:0:0:0,-13.2453,-101.034	0/0:68:68,0:68:2420:0:0:0,-20.47,-143.46	0/0:72:72,0:72:2588:0:0:0,-21.6742,-186.657	0/1:35:16,19:16:576:19:664:-28.0307,0,-28.5502	0/0:121:121,0:121:4343:0:0:0,-36.4246,-258.202	0/0:63:63,0:63:2252:0:0:0,-18.9649,-134.199	0/0:148:148,0:148:5308:0:0:0,-44.5524,-343.634	0/0:193:193,0:193:6916:0:0:0,-58.0988,-472.197	0/0:43:43,0:43:1533:0:0:0,-12.9443,-89.2378	0/0:86:85,1:85:3048:1:36:0,-23.3299,-178.504	0/0:2:2,0:2:72:0:0:0,-0.60206,-4.50971	0/0:152:152,0:152:5435:0:0:0,-45.7566,-348.678	0/0:107:107,0:107:3836:0:0:0,-32.2102,-229.204	0/0:289:289,0:289:10375:0:0:0,-86.9977,-708.686	0/0:77:77,0:77:2755:0:0:0,-23.1793,-188.25	0/0:48:48,0:48:1720:0:0:0,-14.4494,-118.113	0/1:59:36,23:36:1296:23:828:-29.2919,0,-71.1884	0/0:148:148,0:148:5295:0:0:0,-44.5524,-362.239	0/0:14:14,0:14:504:0:0:0,-4.21442,-29.528	0/0:65:65,0:65:2336:0:0:0,-19.5669,-137.398	0/0:62:62,0:62:2223:0:0:0,-18.6639,-134.734	0/0:34:34,0:34:1220:0:0:0,-10.235,-79.3973	0/1:95:55,40:55:1980:40:1418:-46.56,0,-96.531	0/1:57:21,36:21:756:36:1288:-56.3293,0,-34.8291	0/0:201:201,0:201:7220:0:0:0,-60.507,-493.24	0/0:140:140,0:140:5011:0:0:0,-42.1442,-340.429
chr04	3041997	.	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chr04	3081132	.	A	G	27810	PASS	AB=0.4997;ABP=3.01291;AC=42;AF=0.223404;AN=188;AO=1675;CIGAR=1X;DP=7631;DPB=7631;DPRA=1.10618;EPP=3640.23;EPPR=12866.9;GTI=0;LEN=1;MEANALT=1.02;MQM=59.9934;MQMR=59.9982;NS=94;NUMALT=1;ODDS=5.07995;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59736;QR=213007;RO=5952;RPL=0;RPP=3640.23;RPPR=12866.9;RPR=1675;RUN=1;SAF=1675;SAP=3640.23;SAR=0;SRF=5952;SRP=12927.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:38,15:38:1364:15:540:-32.9819,0,-107.106	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.246	0/0:111:111,0:111:3958:0:0:0,-33.4143,-356.409	0/0:69:67,2:67:2382:2:72:0,-13.9343,-207.798	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:80:37,43:37:1332:43:1516:-112.649,0,-96.1	0/0:89:89,0:89:3170:0:0:0,-26.7917,-285.522	0/1:74:31,43:31:1101:43:1525:-115.265,0,-77.1221	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:73:73,0:73:2605:0:0:0,-21.9752,-234.697	0/1:70:32,38:32:1144:38:1360:-101.628,0,-82.1974	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:65:34,31:34:1216:31:1108:-80.464,0,-90.1796	0/1:45:20,25:20:720:25:900:-67.7747,0,-51.5824	0/0:61:61,0:61:2132:0:0:0,-18.3628,-192.142	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:41:27,14:27:960:14:504:-33.3559,0,-74.374	0/1:115:68,47:68:2413:47:1688:-117.588,0,-182.807	0/1:155:76,79:76:2732:79:2810:-206.478,0,-199.463	0/1:89:30,59:30:1072:59:2112:-163.557,0,-70.0008	0/1:72:27,45:27:957:45:1608:-123.336,0,-64.7697	0/0:98:94,4:94:3384:4:140:0,-16.5564,-291.829	0/1:50:28,22:28:1008:22:792:-56.5542,0,-75.9849	0/1:255:134,121:134:4786:121:4340:-314.012,0,-354.131	0/1:134:65,68:65:2324:68:2406:-176.397,0,-169.023	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:169:97,72:97:3488:72:2554:-179.234,0,-263.256	0/1:95:48,47:48:1728:47:1688:-123.609,0,-127.207	0/0:112:111,1:111:3943:1:36:0,-30.1171,-351.461	0/1:8:3,5:3:104:5:176:-13.7768,0,-7.29457	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:216:216,0:216:7753:0:0:0,-65.0225,-697.797	0/0:147:147,0:147:5284:0:0:0,-44.2514,-475.693	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:123:66,57:66:2353:57:2033:-146.214,0,-175.001	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:77:45,32:45:1620:32:1144:-80.0902,0,-122.911	0/1:68:22,46:22:784:46:1648:-128.139,0,-50.4139	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726	0/1:79:45,34:45:1620:34:1216:-85.9652,0,-122.309	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/1:165:91,74:91:3257:74:2641:-188.265,0,-243.679	0/0:105:105,0:105:3746:0:0:0,-31.6081,-337.338	0/1:84:36,48:36:1273:48:1694:-127.456,0,-89.5844	0/0:160:160,0:160:5733:0:0:0,-48.1648,-516.084	0/0:9:8,0:8:288:0:0:0,-2.40824,-26.0408	0/1:100:67,33:67:2397:33:1188:-77.1256,0,-185.882	0/1:29:10,19:10:360:19:669:-51.8041,0,-24.0144	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:89:89,0:89:3177:0:0:0,-26.7917,-286.153	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:74:74,0:74:2645:0:0:0,-22.2762,-238.295	0/1:108:50,58:50:1800:58:2071:-154.148,0,-129.771	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:179:179,0:179:6406:0:0:0,-53.8844,-576.625	0/1:172:84,88:84:3005:88:3154:-232.307,0,-218.902	0/1:27:14,13:14:504:13:444:-32.1563,0,-37.5703	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:138:51,87:51:1817:87:3098:-237.485,0,-122.267	0/1:40:15,25:15:540:25:900:-69.2798,0,-36.8953	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/0:103:101,0:101:3609:0:0:0,-30.404,-324.655	0/1:40:28,12:28:1008:12:428:-26.8176,0,-78.9952	0/0:132:132,0:132:4665:0:0:0,-39.736,-420.009	0/0:156:155,1:155:5541:1:36:0,-43.3624,-495.215	0/1:79:49,30:49:1760:30:1050:-71.0249,0,-134.903	0/1:80:38,42:38:1364:42:1508:-111.932,0,-98.9783	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:95:94,1:94:3350:1:36:0,-24.9996,-298.116	0/0:91:90,1:90:3240:1:36:0,-23.7955,-288.222	0/0:213:212,1:212:7556:1:36:0,-60.5211,-676.479	0/0:144:144,0:144:5172:0:0:0,-43.3483,-465.618	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:99:45,54:45:1605:54:1921:-143.363,0,-114.936	0/0:167:167,0:167:6004:0:0:0,-50.272,-540.462	0/1:37:14,23:14:504:23:824:-63.3452,0,-34.56	0/0:88:87,1:87:3102:1:36:0,-22.8924,-275.806	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:100:54,46:54:1944:46:1637:-117.514,0,-145.133	0/1:66:23,43:23:820:43:1521:-117.313,0,-54.2545	0/0:98:98,0:98:3497:0:0:0,-29.5009,-314.935	0/0:99:99,0:99:3534:0:0:0,-29.802,-318.266
chr04	3081283	.	C	T	24288.6	PASS	AB=0.452482;ABP=67.8101;AC=45;AF=0.239362;AN=188;AO=1496;CIGAR=1X;DP=7032;DPB=7032;DPRA=0.954817;EPP=3225.53;EPPR=11864;GTI=3;LEN=1;MEANALT=1.04348;MQM=59.5561;MQMR=59.3156;NS=94;NUMALT=1;ODDS=4.91026;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53419;QR=197750;RO=5530;RPL=1493;RPP=3225.53;RPPR=11864;RPR=3;RUN=1;SAF=0;SAP=3251.53;SAR=1496;SRF=0;SRP=12011.3;SRR=5530;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:13,11:13:464:11:396:-28.758,0,-34.7851	0/0:121:121,0:121:4340:0:0:0,-36.4246,-389.76	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.391	0/0:106:105,0:105:3759:0:0:0,-31.6081,-337.992	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.042	0/0:18:18,0:18:625:0:0:0,-5.41854,-56.3735	0/1:77:51,26:51:1824:26:932:-61.0196,0,-141.226	0/0:172:172,0:172:6147:0:0:0,-51.7772,-552.901	0/1:53:35,18:35:1256:18:636:-41.6053,0,-97.371	0/0:56:55,1:55:1968:1:36:0,-13.2594,-173.431	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.664	0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.346	0/1:67:29,38:29:1032:38:1360:-102.532,0,-72.9999	0/0:66:66,0:66:2368:0:0:0,-19.868,-212.294	0/1:54:33,21:33:1175:21:756:-52.1112,0,-89.773	0/1:57:25,32:25:896:32:1140:-85.7459,0,-63.7924	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:41:40,0:40:1428:0:0:0,-12.0412,-128.488	0/1:43:20,23:20:720:23:820:-61.174,0,-52.1763	0/1:131:63,68:63:2247:68:2424:-178.917,0,-162.946	0/1:89:52,37:52:1860:37:1332:-93.3825,0,-140.74	0/1:79:36,43:36:1296:43:1536:-114.637,0,-93.1575	0/1:56:39,17:39:1400:17:608:-38.1943,0,-109.411	0/1:74:67,7:67:2396:7:248:-0.387975,0,-192.835	0/1:53:40,13:40:1428:13:460:-25.7808,0,-112.708	0/1:193:98,95:98:3516:95:3408:-248.804,0,-258.512	0/1:178:97,81:97:3475:81:2912:-208.601,0,-258.998	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8757	0/1:219:138,81:138:4951:81:2884:-193.87,0,-379.216	0/1:88:47,41:47:1672:41:1454:-104.654,0,-124.263	0/0:114:114,0:114:4067:0:0:0,-34.3174,-365.956	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6161	0/1:27:15,12:15:540:12:428:-30.7264,0,-40.7636	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3052	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:149:149,0:149:5322:0:0:0,-44.8535,-479.1	0/0:177:177,0:177:6335:0:0:0,-53.2823,-570.04	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.932	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.2541	0/1:96:34,62:34:1216:62:2212:-170.434,0,-80.4714	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.767	0/1:161:98,63:98:3504:63:2245:-153.802,0,-267.057	0/1:44:22,22:22:792:22:788:-57.9513,0,-58.301	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.685	0/1:62:39,22:39:1392:22:790:-52.6631,0,-106.855	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.103	0/1:161:89,72:89:3192:72:2572:-183.179,0,-238.867	0/0:41:41,0:41:1453:0:0:0,-12.3422,-130.86	0/1:104:51,52:51:1815:52:1860:-136.315,0,-132.238	0/0:126:126,0:126:4513:0:0:0,-37.9298,-406.233	0/1:10:3,7:3:108:7:252:-20.0104,0,-7.06487	0/1:79:47,32:47:1676:32:1140:-79.1033,0,-127.291	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.2922	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:115:115,0:115:4105:0:0:0,-34.6184,-369.543	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5434	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:77:77,0:77:2753:0:0:0,-23.1793,-247.95	0/1:103:54,49:54:1924:49:1752:-126.916,0,-142.409	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4781	0/0:163:163,0:163:5822:0:0:0,-49.0679,-524.044	0/1:140:68,72:68:2427:72:2559:-188.36,0,-176.346	0/1:58:29,29:29:1044:29:1032:-75.602,0,-76.8105	0/0:65:65,0:65:2320:0:0:0,-19.5669,-208.997	0/1:102:47,55:47:1684:55:1953:-145.309,0,-120.508	0/1:75:28,47:28:1004:47:1680:-128.817,0,-68.0986	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.026	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.853	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.412	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:103:103,0:103:3679:0:0:0,-31.0061,-331.23	0/1:36:21,15:21:756:15:540:-38.0995,0,-57.5138	0/0:149:149,0:149:5300:0:0:0,-44.8535,-476.072	0/0:122:122,0:122:4361:0:0:0,-36.7257,-392.184	0/1:77:43,34:43:1536:34:1216:-86.5673,0,-114.831	0/1:93:57,36:57:2044:36:1292:-88.5856,0,-156.228	0/1:16:11,5:11:396:5:161:-9.99008,0,-31.1647	0/0:91:91,0:91:3249:0:0:0,-27.3937,-292.471	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.257	0/0:216:216,0:216:7754:0:0:0,-65.0225,-696.589	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.685	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.167	0/1:71:42,29:42:1495:29:1040:-72.5412,0,-113.365	0/0:130:130,0:130:4643:0:0:0,-39.1339,-417.666	0/1:31:17,14:17:612:14:500:-35.9813,0,-46.0815	0/0:51:49,0:49:1748:0:0:0,-14.7505,-157.325	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.299	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.971	0/1:85:45,40:45:1616:40:1436:-103.95,0,-120.133	0/1:65:18,47:18:633:47:1657:-129.817,0,-37.7005	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.478	0/0:79:79,0:79:2820:0:0:0,-23.7814,-253.962
chr04	3081289	.	CGGCC	TGGCG,TGGCC	138687	PASS	AB=0.585771,0.403258;ABP=195.22,247.535;AC=145,43;AF=0.771277,0.228723;AN=188;AO=5625,1218;CIGAR=1X3M1X,1X4M;DP=6919;DPB=6918.6;DPRA=0,0.903712;EPP=12217.5,2647.86;EPPR=0;GTI=3;LEN=5,1;MEANALT=2.2234,2.71111;MQM=59.3275,59.697;MQMR=0;NS=94;NUMALT=2;ODDS=1.78077;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=191827,41895;QR=0;RO=0;RPL=5625,1218;RPP=12217.5,2647.86;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12217.5,2647.86;SAR=5625,1218;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:20:0,13,7:0:0:13,7:430,229:-53.5745,-18.8223,-14.9089,-35.0804,0,-32.9732	1/1:125:0,124,0:0:0:124,0:4233,0:-380.523,-37.3277,0,-380.523,-37.3277,-380.523	1/1:69:0,68,0:0:0:68,0:2276,0:-204.757,-20.47,0,-204.757,-20.47,-204.757	1/1:107:0,105,0:0:0:105,0:3593,0:-322.957,-31.6082,0,-322.957,-31.6082,-322.957	1/1:57:0,56,0:0:0:56,0:1905,0:-171.454,-16.8577,0,-171.454,-16.8577,-171.454	1/1:19:0,17,0:0:0:17,0:595,0:-53.5506,-5.11751,0,-53.5506,-5.11751,-53.5506	1/2:75:0,53,22:0:0:53,22:1801,753:-207.511,-61.4624,-45.5078,-146.39,0,-139.767	1/1:179:0,173,0:0:0:173,0:5902,0:-530.63,-52.0782,0,-530.63,-52.0782,-530.63	1/2:54:0,39,15:0:0:39,15:1333,532:-151.852,-43.6894,-31.9493,-108.514,0,-103.998	1/1:57:0,55,1:0:0:55,1:1863,36:-167.501,-16.5567,0,-164.564,-13.569,-164.263	1/1:72:0,71,0:0:0:71,0:2391,0:-215.135,-21.3731,0,-215.135,-21.3731,-215.135	1/1:65:0,63,0:0:0:63,0:2175,0:-195.742,-18.9649,0,-195.742,-18.9649,-195.742	1/2:60:0,28,31:0:0:28,31:967,1100:-168.304,-89.7542,-81.3253,-78.6732,0,-69.3413	1/1:67:0,65,0:0:0:65,0:2231,0:-200.461,-19.567,0,-200.461,-19.567,-200.461	1/2:51:0,32,17:0:0:32,17:1076,588:-134.939,-47.7791,-38.1462,-87.1542,0,-82.0366	1/2:48:0,25,23:0:0:25,23:870,808:-136.851,-66.1164,-58.5907,-71.0844,0,-64.1607	1/1:61:0,61,0:0:0:61,0:2085,0:-187.92,-18.3628,0,-187.92,-18.3628,-187.92	1/1:41:0,40,0:0:0:40,0:1384,0:-124.486,-12.0412,0,-124.486,-12.0412,-124.486	1/2:34:0,21,13:0:0:21,13:707,452:-94.372,-37.0968,-30.7752,-57.6185,0,-53.7051	1/2:120:0,60,59:0:0:60,59:2070,2037:-333.506,-165.489,-147.428,-168.051,0,-150.29	1/2:83:0,53,28:0:0:53,28:1784,943:-220.919,-76.4134,-60.4588,-144.512,0,-136.083	1/2:73:0,37,36:0:0:37,36:1239,1203:-198.057,-97.7255,-86.5874,-100.666,0,-89.8286	1/2:53:0,39,14:0:0:39,14:1366,473:-149.813,-38.6768,-26.9366,-111.477,0,-107.263	1/1:73:0,69,4:0:0:69,4:2374,136:-213.084,-20.7711,0,-202.053,-9.39965,-200.849	1/2:53:0,40,12:0:0:40,12:1365,416:-144.526,-33.7769,-21.7357,-110.818,0,-107.205	1/2:180:0,96,81:0:0:96,81:3271,2757:-489.027,-223.677,-194.778,-265.386,0,-241.002	1/2:170:0,100,67:0:0:100,67:3393,2325:-464.047,-188.993,-158.89,-275.058,0,-254.889	1/1:22:0,22,0:0:0:22,0:753,0:-68.078,-6.62266,0,-68.078,-6.62266,-68.078	1/2:214:0,145,67:0:0:145,67:4909,2238:-578.821,-181.178,-137.529,-397.648,0,-377.479	1/2:80:0,46,33:0:0:46,33:1562,1145:-219.792,-93.1216,-79.2742,-126.722,0,-116.788	1/1:118:0,117,0:0:0:117,0:4000,0:-359.786,-35.2205,0,-359.786,-35.2205,-359.786	1/2:8:0,7,1:0:0:7,1:245,36:-23.2178,-3.29724,-1.19003,-20.2791,0,-19.9781	1/2:25:0,15,10:0:0:15,10:520,341:-70.2432,-28.0028,-23.4874,-42.5834,0,-39.5731	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:4:0,4,0:0:0:4,0:137,0:-12.661,-1.20412,0,-12.661,-1.20412,-12.661	1/2:15:0,10,5:0:0:10,5:346,168:-42.07,-13.9458,-10.9355,-28.4634,0,-26.9583	1/1:153:0,153,0:0:0:153,0:5165,0:-465.016,-46.0576,0,-465.016,-46.0576,-465.016	1/1:180:0,179,0:0:0:179,0:6124,0:-550.829,-53.8844,0,-550.829,-53.8844,-550.829	1/1:69:0,69,0:0:0:69,0:2376,0:-214.07,-20.7711,0,-214.07,-20.7711,-214.07	1/1:7:0,7,0:0:0:7,0:245,0:-22.3893,-2.10721,0,-22.3893,-2.10721,-22.3893	1/2:91:0,36,55:0:0:36,55:1242,1906:-256.009,-155.245,-144.408,-101.109,0,-84.5526	1/1:42:0,41,0:0:0:41,0:1344,0:-120.994,-12.3422,0,-120.994,-12.3422,-120.994	1/2:153:0,101,51:0:0:101,51:3430,1749:-420.167,-142.022,-111.618,-278.177,0,-262.824	1/2:42:0,23,17:0:0:23,17:786,599:-112.616,-48.8552,-41.9315,-63.8409,0,-58.7233	1/1:55:0,54,0:0:0:54,0:1816,0:-163.367,-16.2556,0,-163.367,-16.2556,-163.367	1/2:61:0,40,21:0:0:40,21:1370,717:-169.707,-58.4949,-46.4537,-111.553,0,-105.232	1/1:69:0,69,0:0:0:69,0:2325,0:-209.487,-20.7711,0,-209.487,-20.7711,-209.487	1/2:153:0,90,59:0:0:90,59:3066,2019:-412.587,-163.887,-136.794,-248.769,0,-231.008	1/1:42:0,42,0:0:0:42,0:1426,0:-128.176,-12.6433,0,-128.176,-12.6433,-128.176	1/2:94:0,53,41:0:0:53,41:1780,1384:-256.652,-112.505,-96.5504,-144.483,0,-132.141	1/1:128:0,127,0:0:0:127,0:4377,0:-393.811,-38.2308,0,-393.811,-38.2308,-393.811	1/2:9:0,3,6:0:0:3,6:104,212:-26.0664,-17.6153,-16.7122,-8.79988,0,-6.9937	1/2:75:0,47,27:0:0:47,27:1628,917:-206.68,-74.47,-60.3216,-132.327,0,-124.199	1/2:15:0,10,4:0:0:10,4:333,140:-38.3848,-11.4383,-8.42797,-26.9886,0,-25.7845	1/1:5:0,5,0:0:0:5,0:169,0:-15.5423,-1.50515,0,-15.5423,-1.50515,-15.5423	1/1:122:0,122,0:0:0:122,0:4169,0:-375.324,-36.7257,0,-375.324,-36.7257,-375.324	1/1:26:0,25,0:0:0:25,0:859,0:-77.319,-7.52575,0,-77.319,-7.52575,-77.319	1/1:7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chr04	3112686	.	G	T	65309.6	PASS	AB=0.471824;ABP=17.4495;AC=145;AF=0.771277;AN=188;AO=3135;CIGAR=1X;DP=4245;DPB=4245;DPRA=0;EPP=6810.58;EPPR=2406.83;GTI=0;LEN=1;MEANALT=1.02128;MQM=53.2912;MQMR=59.4228;NS=94;NUMALT=1;ODDS=0.329726;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112309;QR=39431;RO=1107;RPL=0;RPP=6810.58;RPPR=2406.83;RPR=3135;RUN=1;SAF=3135;SAP=6810.58;SAR=0;SRF=1107;SRP=2406.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:13,9:13:468:9:324:-22.809,0,-35.8288	1/1:67:1,66:1:36:66:2376:-207.548,-16.5707,0	1/1:75:0,75:0:0:75:2692:-240.415,-22.5773,0	1/1:75:0,75:0:0:75:2664:-238.602,-22.5773,0	1/1:39:0,39:0:0:39:1395:-125.62,-11.7402,0	1/1:39:0,39:0:0:39:1392:-124.641,-11.7402,0	0/1:66:35,31:35:1241:31:1108:-79.7309,0,-92.099	1/1:70:1,69:1:36:69:2484:-218.866,-17.4738,0	0/1:46:21,25:21:756:25:873:-64.5567,0,-54.5198	1/1:34:0,34:0:0:34:1220:-109.708,-10.235,0	1/1:31:0,31:0:0:31:1108:-99.1278,-9.33193,0	1/1:29:0,29:0:0:29:1032:-92.9284,-8.72987,0	0/1:26:13,13:13:464:13:468:-32.6587,0,-34.2625	1/1:35:0,35:0:0:35:1256:-112.643,-10.5361,0	0/1:17:8,9:8:288:9:324:-24.3648,0,-21.1499	0/1:14:5,9:5:180:9:324:-25.1232,0,-12.3376	1/1:28:0,28:0:0:28:1004:-89.6976,-8.42884,0	1/1:19:0,19:0:0:19:684:-61.7291,-5.71957,0	0/1:14:8,6:8:284:6:216:-15.5263,0,-21.6807	0/1:78:42,36:42:1512:36:1296:-92.3024,0,-112.726	0/1:73:47,26:47:1680:26:928:-61.732,0,-129.492	0/1:45:30,15:30:1057:15:540:-35.3179,0,-81.8908	0/1:18:7,11:7:237:11:396:-30.3775,0,-16.2405	1/1:45:2,43:2:72:43:1536:-131.198,-6.70963,0	0/1:49:23,26:23:805:26:936:-69.5637,0,-58.017	0/1:126:60,65:60:2156:65:2327:-171,0,-156.283	0/1:123:62,61:62:2224:61:2192:-159.665,0,-163.388	1/1:10:0,10:0:0:10:360:-32.6979,-3.0103,0	0/1:134:66,66:66:2361:66:2368:-172.261,0,-172.432	0/1:76:42,34:42:1489:34:1215:-85.4581,0,-111.415	1/1:37:0,37:0:0:37:1324:-118.914,-11.1381,0	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.86629	0/1:10:6,4:6:216:4:144:-10.2808,0,-16.7802	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	1/1:6:0,6:0:0:6:216:-18.4745,-1.80618,0	0/1:7:4,3:4:140:3:108:-7.93686,0,-10.8374	1/1:82:0,82:0:0:82:2944:-264.535,-24.6845,0	1/1:43:0,43:0:0:43:1544:-138.933,-12.9443,0	1/1:23:0,23:0:0:23:813:-72.581,-6.92369,0	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:55:32,23:32:1148:23:824:-57.5737,0,-87.0594	1/1:12:0,12:0:0:12:428:-38.806,-3.61236,0	0/1:77:43,34:43:1521:34:1224:-87.1275,0,-113.575	0/1:27:13,14:13:468:14:504:-37.5328,0,-34.3318	1/1:15:0,15:0:0:15:540:-48.899,-4.51545,0	0/1:67:41,26:41:1460:26:936:-64.3115,0,-111.527	1/1:79:0,79:0:0:79:2840:-253.911,-23.7814,0	0/1:72:35,37:35:1245:37:1328:-96.7255,0,-90.6693	1/1:87:0,87:0:0:87:3116:-279.134,-26.1896,0	0/1:64:40,24:40:1421:24:860:-58.3805,0,-108.825	1/1:113:0,113:0:0:113:4048:-363.432,-34.0164,0	0/1:11:5,6:5:180:6:216:-16.4626,0,-13.2407	0/1:73:43,30:43:1529:30:1065:-73.9288,0,-115.893	0/1:26:11,15:11:392:15:532:-40.3737,0,-27.7933	1/1:8:0,8:0:0:8:288:-26.0061,-2.40824,0	1/1:46:0,46:0:0:46:1652:-146.315,-13.8474,0	1/1:16:0,16:0:0:16:576:-51.0162,-4.81648,0	1/1:6:0,6:0:0:6:216:-19.7835,-1.80618,0	0/1:10:5,5:5:180:5:180:-13.5357,0,-13.5418	1/1:45:0,45:0:0:45:1597:-143.014,-13.5464,0	0/1:88:39,49:39:1389:49:1760:-131.352,0,-98.7939	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:77:0,77:0:0:77:2752:-247.478,-23.1793,0	0/1:66:31,35:31:1097:35:1256:-93.1524,0,-79.1424	0/1:41:14,27:14:504:27:968:-74.666,0,-33.3559	1/1:38:0,38:0:0:38:1364:-121.858,-11.4391,0	0/1:56:19,37:19:657:37:1328:-102.39,0,-42.5918	0/1:103:72,31:72:2561:31:1112:-67.5251,0,-199.705	1/1:10:0,10:0:0:10:360:-32.5717,-3.0103,0	1/1:37:0,37:0:0:37:1328:-118.979,-11.1381,0	1/1:40:0,40:0:0:40:1428:-128.301,-12.0412,0	0/1:11:6,5:6:216:5:180:-13.2242,0,-16.4721	1/1:106:0,106:0:0:106:3800:-340.242,-31.9092,0	0/1:28:20,8:20:712:8:288:-17.5514,0,-55.9617	1/1:133:0,133:0:0:133:4758:-424.662,-40.037,0	1/1:51:0,51:0:0:51:1824:-164.229,-15.3525,0	0/1:113:45,68:45:1597:68:2436:-183.392,0,-109.373	0/1:47:27,20:27:952:20:720:-50.6342,0,-71.8386	0/1:5:4,1:4:144:1:36:-2.08408,0,-11.5317	1/1:45:0,45:0:0:45:1620:-144.734,-13.5464,0	1/1:48:0,48:0:0:48:1724:-154.245,-14.4494,0	1/1:112:0,112:0:0:112:3986:-356.105,-33.7154,0	1/1:44:0,44:0:0:44:1584:-142.447,-13.2453,0	1/1:13:0,13:0:0:13:468:-42.3423,-3.91339,0	0/1:19:11,8:11:392:8:288:-20.5243,0,-29.8949	1/1:39:0,39:0:0:39:1400:-126.116,-11.7402,0	0/1:6:5,1:5:180:1:36:-1.58142,0,-14.7459	1/1:31:0,31:0:0:31:1108:-99.5962,-9.33193,0	1/1:18:0,18:0:0:18:648:-58.1281,-5.41854,0	1/1:11:0,11:0:0:11:392:-35.5162,-3.31133,0	0/1:54:32,22:32:1136:22:788:-54.4536,0,-86.2841	0/1:27:15,12:15:540:12:432:-30.93,0,-40.8064	1/1:51:0,51:0:0:51:1824:-163.135,-15.3525,0	1/1:27:0,27:0:0:27:960:-86.4822,-8.12781,0
chr04	3128402	.	T	C	92436.8	PASS	AB=0.506221;ABP=5.685;AC=44;AF=0.234043;AN=188;AO=4061;CIGAR=1X;DP=17169;DPB=17169;DPRA=1.18766;EPP=8821.36;EPPR=28314.9;GTI=1;LEN=1;MEANALT=1.03226;MQM=56.8793;MQMR=59.7984;NS=94;NUMALT=1;ODDS=2.7133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144826;QR=468261;RO=13106;RPL=1946;RPP=18.2823;RPPR=63.8559;RPR=2115;RUN=1;SAF=1946;SAP=18.2823;SAR=2115;SRF=6839;SRP=57.2199;SRR=6267;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:31,19:31:1100:19:680:-46.3623,0,-84.2588	0/0:363:362,1:362:12939:1:36:0,-105.676,-1160.59	0/0:382:381,1:381:13521:1:36:0,-111.395,-1212.94	0/0:464:464,0:464:16625:0:0:0,-139.678,-1495.86	0/0:166:166,0:166:5928:0:0:0,-49.971,-533.349	0/0:167:167,0:167:5979:0:0:0,-50.272,-538.157	0/1:292:146,146:146:5223:146:5223:-381.843,0,-382.189	0/0:341:341,0:341:12193:0:0:0,-102.651,-1097.11	0/1:163:81,82:81:2904:82:2911:-212.716,0,-212.5	0/0:208:208,0:208:7421:0:0:0,-62.6142,-667.849	0/0:92:92,0:92:3273:0:0:0,-27.6948,-294.776	0/0:149:149,0:149:5344:0:0:0,-44.8535,-481.076	0/1:138:62,76:62:2209:76:2704:-201.498,0,-157.324	0/0:143:142,1:142:5089:1:36:0,-39.4541,-454.543	0/1:132:79,53:79:2821:53:1904:-131.545,0,-214.352	0/1:118:54,64:54:1940:64:2274:-169.165,0,-139.346	0/0:144:143,1:143:5118:1:36:0,-39.7591,-457.022	0/0:141:141,0:141:5048:0:0:0,-42.4452,-454.432	0/1:75:37,38:37:1328:38:1360:-99.9029,0,-97.2001	0/1:371:184,186:184:6591:186:6612:-482.906,0,-481.513	0/1:248:124,124:124:4444:124:4432:-323.785,0,-325.401	0/1:142:41,101:41:1472:101:3607:-281.975,0,-90.029	0/1:143:87,56:87:3124:56:2004:-137.469,0,-238.338	0/0:210:202,8:202:7243:8:288:0,-37.0847,-625.405	0/1:184:114,70:114:4083:70:2488:-168.609,0,-312.261	0/1:516:234,282:234:8360:282:10095:-752.413,0,-597.069	0/1:406:213,193:213:7648:193:6879:-496.225,0,-566.104	0/0:79:79,0:79:2811:0:0:0,-23.7814,-253.214	0/1:519:233,286:233:8312:286:10240:-764.505,0,-591.837	0/1:194:91,102:91:3230:102:3644:-268.039,0,-232.358	0/0:324:323,1:323:11545:1:36:0,-93.938,-1035.31	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	0/1:19:10,9:10:360:9:324:-23.6973,0,-26.9544	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:12:10,2:10:360:2:72:-3.21577,0,-29.1319	0/0:349:349,0:349:12437:0:0:0,-105.059,-1119	0/0:307:306,1:306:10915:1:36:0,-88.8179,-978.597	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.816	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:335:168,167:168:5952:167:5962:-435.288,0,-434.909	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.795	0/1:286:154,132:154:5485:132:4697:-336.102,0,-407.681	0/1:116:62,54:62:2219:54:1932:-138.999,0,-165.054	0/0:107:106,1:106:3776:1:36:0,-28.6145,-336.273	0/1:133:71,62:71:2544:62:2219:-159.809,0,-189.165	0/0:254:253,1:253:9028:1:36:0,-72.8633,-808.857	0/1:304:151,153:151:5372:153:5445:-397.669,0,-392.048	0/0:156:156,0:156:5579:0:0:0,-46.9607,-502.206	0/1:291:147,144:147:5195:144:5159:-376.469,0,-380.084	0/0:319:319,0:319:11412:0:0:0,-96.0286,-1026.94	0/1:7:4,3:4:144:3:108:-7.95835,0,-11.2064	0/1:284:131,153:131:4700:153:5433:-402.403,0,-337.66	0/1:70:44,26:44:1565:26:932:-63.0569,0,-120.067	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:228:228,0:228:8110:0:0:0,-68.6348,-729.494	0/0:84:82,2:82:2940:2:72:0,-18.4498,-257.99	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:14:9,5:9:320:5:180:-12.3045,0,-24.9227	0/0:163:160,3:160:5730:3:108:0,-39.007,-505.732	0/1:221:106,115:106:3804:115:4078:-300.067,0,-276.015	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:287:287,0:287:10283:0:0:0,-86.3956,-925.289	0/1:381:182,199:182:6458:199:7101:-523.701,0,-466.606	0/1:167:99,68:99:3539:68:2433:-168.463,0,-268.439	0/0:141:140,1:140:5002:1:32:0,-39.2459,-447.12	0/1:241:127,114:127:4536:114:4050:-291.779,0,-335.855	0/1:223:73,150:73:2596:150:5365:-415.453,0,-166.759	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.568	0/0:168:168,0:168:6024:0:0:0,-50.573,-542.249	0/0:188:188,0:188:6701:0:0:0,-56.5936,-603.156	0/1:48:23,25:23:813:25:892:-66.0301,0,-59.0397	0/0:152:151,1:151:5392:1:36:0,-42.1673,-481.643	0/1:118:58,60:58:2072:60:2121:-155.164,0,-151.229	0/0:284:284,0:284:10120:0:0:0,-85.4925,-909.382	0/0:242:242,0:242:8655:0:0:0,-72.8493,-778.935	0/1:273:136,137:136:4831:137:4880:-355.453,0,-352.709	0/1:228:121,107:121:4316:107:3819:-274.43,0,-319.972	0/1:9:4,5:4:140:5:180:-13.8261,0,-10.2353	0/0:201:201,0:201:7188:0:0:0,-60.507,-646.962	0/0:212:211,1:211:7539:1:36:0,-60.2201,-674.931	0/0:405:404,1:404:14410:1:36:0,-118.319,-1292.75	0/0:183:183,0:183:6572:0:0:0,-55.0885,-591.508	0/0:136:136,0:136:4884:0:0:0,-40.9401,-439.57	0/1:150:77,73:77:2752:73:2596:-188.439,0,-202.761	0/0:225:224,1:224:8014:1:36:0,-64.1361,-717.541	0/1:69:40,29:40:1436:29:1019:-71.1243,0,-108.767	0/0:129:128,1:128:4587:1:32:0,-35.6336,-408.811	0/0:150:150,0:150:5376:0:0:0,-45.1545,-483.825	0/0:81:80,1:80:2864:1:36:0,-20.7903,-254.318	0/1:135:69,66:69:2480:66:2357:-171.259,0,-182.751	0/1:132:40,92:40:1432:92:3235:-251.159,0,-89.437	0/0:182:180,2:180:6436:2:72:0,-47.9532,-572.476	0/0:206:206,0:206:7364:0:0:0,-62.0122,-662.796
chr04	3157430	.	A	C	65593.8	PASS	AB=0.522715;ABP=11.3956;AC=146;AF=0.776596;AN=188;AO=3152;CIGAR=1X;DP=4050;DPB=4050;DPRA=0;EPP=6847.49;EPPR=1952.99;GTI=0;LEN=1;MEANALT=1;MQM=59.9768;MQMR=59.9866;NS=94;NUMALT=1;ODDS=4.64752;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111313;QR=31940;RO=898;RPL=3152;RPP=6847.49;RPPR=1952.99;RPR=0;RUN=1;SAF=3152;SAP=6847.49;SAR=0;SRF=898;SRP=1952.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:9,18:9:324:18:644:-50.1628,0,-21.378	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	1/1:68:0,68:0:0:68:2406:-216.794,-20.47,0	1/1:56:1,55:1:36:55:1944:-171.635,-13.2594,0	1/1:28:1,27:1:36:27:972:-84.1996,-4.83057,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:55:30,25:30:1057:25:892:-64.043,0,-78.8823	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:47:19,28:19:680:28:991:-75.3551,0,-47.3808	1/1:24:0,24:0:0:24:842:-76.0963,-7.22472,0	1/1:52:0,52:0:0:52:1839:-165.79,-15.6536,0	1/1:81:0,81:0:0:81:2848:-256.558,-24.3834,0	0/1:56:33,23:33:1176:23:811:-56.4523,0,-89.2901	1/1:77:0,77:0:0:77:2700:-243.245,-23.1793,0	0/1:35:14,21:14:496:21:743:-56.6573,0,-34.4382	0/1:63:30,33:30:1060:33:1175:-87.0921,0,-76.7464	1/1:48:0,48:0:0:48:1691:-152.476,-14.4494,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:30:12,18:12:432:18:633:-48.2642,0,-30.1903	0/1:66:31,35:31:1112:35:1243:-92.3059,0,-80.5234	0/1:47:17,30:17:599:30:1043:-80.0277,0,-40.0897	0/1:58:38,20:38:1352:20:716:-47.308,0,-104.521	0/1:23:8,15:8:284:15:504:-38.7546,0,-18.9797	1/1:40:0,40:0:0:40:1395:-125.843,-12.0412,0	0/1:62:24,38:24:864:38:1352:-103.317,0,-59.4187	0/1:92:50,42:50:1787:42:1489:-106.608,0,-133.416	0/1:69:22,47:22:792:47:1665:-129.364,0,-50.8346	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	0/1:101:52,49:52:1845:49:1733:-125.849,0,-135.924	0/1:28:19,9:19:684:9:324:-21.077,0,-53.4615	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:100:0,100:0:0:100:3561:-320.698,-30.103,0	1/1:51:0,51:0:0:51:1796:-161.919,-15.3525,0	1/1:60:0,60:0:0:60:2110:-190.166,-18.0618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:59:25,34:25:900:34:1203:-90.8143,0,-63.5602	1/1:42:0,42:0:0:42:1452:-130.969,-12.6433,0	0/1:54:30,24:30:1076:24:864:-61.8269,0,-80.8972	0/1:26:14,12:14:500:12:432:-31.3944,0,-37.5094	1/1:27:0,27:0:0:27:938:-84.7293,-8.12781,0	0/1:58:30,28:30:1056:28:976:-70.6899,0,-77.8911	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:37:17,20:17:589:20:716:-53.6296,0,-42.1952	1/1:59:0,59:0:0:59:2091:-188.459,-17.7608,0	0/1:29:20,9:20:716:9:324:-20.776,0,-56.0378	1/1:59:0,59:0:0:59:2072:-186.745,-17.7608,0	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:41:19,22:19:676:22:765:-56.8255,0,-48.8258	0/1:49:22,27:22:788:27:954:-71.4235,0,-56.4805	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	1/1:55:0,55:0:0:55:1944:-175.234,-16.5567,0	1/1:11:0,11:0:0:11:384:-34.8947,-3.31133,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:57:0,57:0:0:57:2023:-182.342,-17.1587,0	0/1:105:49,56:49:1739:56:1973:-146.235,0,-125.186	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:37:0,37:0:0:37:1298:-117.116,-11.1381,0	0/1:45:17,28:17:604:28:993:-76.137,0,-41.1443	0/1:34:11,23:11:388:23:819:-63.7965,0,-25.0223	1/1:21:0,21:0:0:21:747:-67.5543,-6.32163,0	0/1:34:18,16:18:648:16:535:-38.2305,0,-48.4169	0/1:39:25,14:25:896:14:495:-33.1429,0,-69.2202	1/1:34:0,34:0:0:34:1184:-106.862,-10.235,0	1/1:50:1,49:1:36:49:1695:-149.218,-11.4532,0	1/1:40:1,39:1:27:39:1358:-119.817,-9.34142,0	0/1:22:8,14:8:288:14:495:-38.2604,0,-19.6447	1/1:91:0,91:0:0:91:3208:-288.944,-27.3937,0	0/1:39:14,25:14:483:25:892:-68.8595,0,-32.0571	1/1:53:0,53:0:0:53:1877:-169.162,-15.9546,0	1/1:69:0,69:0:0:69:2453:-221.024,-20.7711,0	0/1:53:13,40:13:468:40:1423:-112.412,0,-26.5051	0/1:34:9,25:9:320:25:896:-70.7253,0,-18.9073	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	1/1:26:0,26:0:0:26:911:-82.305,-7.82678,0	1/1:47:0,47:0:0:47:1667:-150.317,-14.1484,0	1/1:67:0,67:0:0:67:2377:-214.187,-20.169,0	1/1:57:0,57:0:0:57:2044:-184.231,-17.1587,0	1/1:49:0,49:0:0:49:1745:-157.333,-14.7505,0	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	1/1:81:0,81:0:0:81:2845:-256.284,-24.3834,0	0/1:20:11,9:11:388:9:324:-23.4853,0,-29.2368	1/1:48:0,48:0:0:48:1681:-151.574,-14.4494,0	1/1:64:0,64:0:0:64:2251:-202.851,-19.2659,0	1/1:48:0,48:0:0:48:1707:-153.915,-14.4494,0	0/1:158:89,69:89:3134:69:2407:-169.32,0,-234.723	0/1:15:7,8:7:244:8:279:-20.9321,0,-17.784	1/1:46:1,45:1:36:45:1574:-138.348,-10.2491,0	1/1:47:0,47:0:0:47:1658:-149.506,-14.1484,0
chr04	3171054	.	GCCT	TCCT	131590	PASS	AB=0.502346;ABP=3.18351;AC=143;AF=0.768817;AN=186;AO=6140;CIGAR=1X3M;DP=7990;DPB=7991.25;DPRA=0;EPP=13205.9;EPPR=3844.39;GTI=0;LEN=1;MEANALT=1.63441;MQM=59.956;MQMR=59.9949;NS=93;NUMALT=1;ODDS=1.20983;PAIRED=0;PAIREDR=0;PAO=2;PQA=68;PQR=0;PRO=0;QA=219643;QR=61759;RO=1781;RPL=6125;RPP=13205.9;RPPR=3844.39;RPR=15;RUN=1;SAF=6140;SAP=13335.9;SAR=0;SRF=1781;SRP=3870.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:23,31:23:755:31:1100:-83.0547,0,-51.9971	1/1:22:0,21:0:0:21:756:-68.1504,-6.32163,0	1/1:83:0,82:0:0:82:2944:-264.834,-24.6845,0	1/1:246:0,241:0:0:241:8616:-775.117,-72.5482,0	1/1:84:0,84:0:0:84:3012:-271.306,-25.2865,0	1/1:45:0,44:0:0:44:1565:-140.904,-13.2453,0	0/1:128:75,52:75:2615:52:1853:-128.458,0,-197.008	1/1:128:0,125:0:0:125:4460:-401.178,-37.6288,0	0/1:103:48,54:48:1697:54:1936:-143.599,0,-122.098	1/1:113:0,111:0:0:111:3937:-354.162,-33.4143,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:62:0,62:0:0:62:2206:-198.804,-18.6639,0	0/1:65:39,26:39:1324:26:936:-64.9925,0,-99.8859	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	0/1:40:22,17:22:771:17:612:-43.37,0,-57.6678	0/1:41:22,19:22:747:19:680:-49.1869,0,-55.2015	1/1:65:0,65:0:0:65:2310:-208.157,-19.567,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:48:21,26:21:682:26:932:-69.6907,0,-47.1784	0/1:159:61,97:61:2137:97:3467:-264.319,0,-144.675	0/1:164:95,69:95:3295:69:2480:-174.084,0,-247.406	0/1:124:84,39:84:2905:39:1400:-88.9809,0,-224.371	0/1:79:38,38:38:1316:38:1368:-100.18,0,-95.4986	1/1:116:5,110:5:179:110:3917:-336.262,-18.5176,0	0/1:74:34,40:34:1177:40:1419:-105.73,0,-83.9554	0/1:283:144,136:144:4912:136:4854:-352.343,0,-357.61	0/1:202:91,109:91:3163:109:3911:-291.619,0,-224.36	1/1:31:0,30:0:0:30:1080:-97.2598,-9.0309,0	0/1:245:106,135:106:3691:135:4836:-362.527,0,-259.535	0/1:57:33,24:33:1160:24:860:-60.5631,0,-87.5471	1/1:121:0,121:0:0:121:4328:-389.694,-36.4246,0	0/1:7:4,3:4:137:3:108:-7.96796,0,-10.5604	0/1:10:3,7:3:102:7:248:-19.6539,0,-6.50608	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:6:2,4:2:63:4:144:-11.5074,0,-4.17697	1/1:169:0,167:0:0:167:5972:-537.293,-50.272,0	1/1:176:0,176:0:0:176:6312:-568.166,-52.9813,0	1/1:58:0,57:0:0:57:2025:-182.318,-17.1587,0	.:.:.:.:.:.:.:.	0/1:126:70,56:70:2446:56:1993:-141.714,0,-182.465	1/1:34:0,34:0:0:34:1209:-108.956,-10.235,0	0/1:127:62,65:62:2142:65:2323:-171.099,0,-154.815	0/1:68:29,39:29:1016:39:1396:-105.469,0,-71.2807	1/1:43:0,41:0:0:41:1476:-132.867,-12.3422,0	0/1:90:42,48:42:1476:48:1720:-127.993,0,-106.04	1/1:107:0,105:0:0:105:3742:-336.673,-31.6082,0	0/1:196:98,96:98:3423:96:3431:-250.263,0,-249.548	1/1:128:2,125:2:72:125:4477:-396.297,-31.6807,0	0/1:128:49,78:49:1704:78:2792:-213.038,0,-115.159	1/1:191:0,188:0:0:188:6734:-605.854,-56.5936,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:54:24,30:24:843:30:1071:-80.446,0,-59.933	0/1:30:17,13:17:603:13:464:-33.0666,0,-45.5689	1/1:24:0,22:0:0:22:788:-70.8851,-6.62266,0	1/1:148:0,148:0:0:148:5316:-478.506,-44.5524,0	1/1:61:0,61:0:0:61:2182:-196.645,-18.3628,0	1/1:9:0,9:0:0:9:315:-28.6338,-2.70927,0	0/1:21:6,12:6:197:12:432:-33.4428,0,-12.2842	1/1:34:0,34:0:0:34:1207:-108.935,-10.235,0	0/1:63:35,27:35:1219:27:963:-68.0201,0,-91.0468	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:273:0,271:0:0:271:9718:-874.259,-81.5791,0	0/1:144:65,78:65:2295:78:2799:-208.832,0,-163.495	0/1:47:30,17:30:1034:17:597:-39.9077,0,-79.2169	1/1:94:0,94:0:0:94:3357:-302.345,-28.2968,0	0/1:83:32,51:32:1128:51:1832:-140.175,0,-76.8421	0/1:51:41,10:41:1425:10:356:-17.0287,0,-113.191	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:56:0,56:0:0:56:1993:-179.642,-16.8577,0	1/1:65:0,65:0:0:65:2323:-209.33,-19.567,0	0/1:16:6,9:6:208:9:324:-24.7024,0,-14.2538	1/1:107:0,106:0:0:106:3803:-342.255,-31.9092,0	0/1:66:36,30:36:1250:30:1080:-77.6453,0,-92.9328	1/1:100:0,98:0:0:98:3501:-315.068,-29.5009,0	1/1:189:0,188:0:0:188:6760:-608.117,-56.5936,0	0/1:69:24,45:24:827:45:1601:-123.608,0,-53.973	0/1:100:42,57:42:1463:57:2044:-154.018,0,-101.801	0/1:17:9,7:9:310:7:252:-17.8527,0,-23.0585	1/1:127:0,127:0:0:127:4568:-411.224,-38.2308,0	1/1:96:0,96:0:0:96:3429:-308.816,-28.8989,0	1/1:189:0,189:0:0:189:6754:-607.896,-56.8947,0	1/1:84:0,84:0:0:84:3008:-270.949,-25.2865,0	1/1:43:0,43:0:0:43:1532:-138.172,-12.9443,0	0/1:58:29,29:29:982:29:1040:-76.4546,0,-71.2257	1/1:122:0,121:0:0:121:4297:-386.695,-36.4246,0	0/1:30:12,18:12:404:18:648:-49.621,0,-27.6522	1/1:58:0,55:0:0:55:1980:-178.146,-16.5567,0	1/1:53:0,52:0:0:52:1859:-167.356,-15.6536,0	1/1:26:0,26:0:0:26:923:-83.3868,-7.82678,0	0/1:80:30,50:30:1041:50:1785:-136.848,0,-69.9156	0/1:62:38,24:38:1315:24:858:-58.8774,0,-99.9829	1/1:143:0,142:0:0:142:5091:-458.081,-42.7463,0	1/1:76:0,76:0:0:76:2713:-244.412,-22.8783,0
chr04	3179181	.	A	G	158686	PASS	AB=0.519457;ABP=15.8546;AC=146;AF=0.776596;AN=188;AO=7433;CIGAR=1X;DP=9325;DPB=9325;DPRA=0;EPP=16143.6;EPPR=4104.92;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9397;MQMR=59.9794;NS=94;NUMALT=1;ODDS=2.67148;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264869;QR=67505;RO=1889;RPL=0;RPP=16143.6;RPPR=4104.92;RPR=7433;RUN=1;SAF=7433;SAP=16143.6;SAR=0;SRF=1889;SRP=4104.92;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	1/1:173:0,173:0:0:173:6166:-555.026,-52.0782,0	1/1:163:0,162:0:0:162:5776:-519.595,-48.7669,0	1/1:175:0,175:0:0:175:6248:-562.415,-52.6803,0	1/1:107:1,106:1:36:106:3808:-339.318,-28.6119,0	1/1:147:0,147:0:0:147:5269:-473.854,-44.2514,0	0/1:104:45,59:45:1604:59:2097:-157.691,0,-113.343	1/1:122:0,121:0:0:121:4305:-387.267,-36.4246,0	0/1:62:20,42:20:720:42:1481:-114.919,0,-46.4649	1/1:112:0,112:0:0:112:3971:-357.552,-33.7154,0	1/1:45:0,45:0:0:45:1599:-144.171,-13.5464,0	1/1:83:0,83:0:0:83:2908:-261.953,-24.9855,0	0/1:85:32,53:32:1139:53:1904:-146.05,0,-77.2271	1/1:104:0,103:0:0:103:3654:-328.702,-31.0061,0	0/1:60:29,31:29:1044:31:1116:-82.6615,0,-76.213	0/1:69:37,32:37:1328:32:1148:-82.8588,0,-99.0512	1/1:71:0,71:0:0:71:2529:-227.86,-21.3731,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	0/1:38:19,19:19:680:19:680:-50.09,0,-50.09	0/1:277:167,110:167:5974:110:3898:-267.499,0,-454.378	0/1:117:47,70:47:1669:70:2472:-187.498,0,-115.218	0/1:137:85,52:85:3018:52:1853:-125.807,0,-230.608	0/1:49:17,32:17:597:32:1136:-87.7633,0,-39.3057	1/1:164:5,159:5:180:159:5692:-495.846,-32.8169,0	0/1:65:24,41:24:860:41:1472:-113.209,0,-58.1549	0/1:245:121,124:121:4337:124:4418:-324.04,0,-316.75	0/1:169:83,86:83:2984:86:3055:-224.304,0,-217.917	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	0/1:291:152,139:152:5452:139:4889:-352.499,0,-403.207	0/1:78:44,34:44:1554:34:1220:-86.6256,0,-116.667	1/1:143:1,142:1:36:142:5069:-452.726,-39.449,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:19:7,12:7:252:12:420:-32.4145,0,-17.3094	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	1/1:243:0,243:0:0:243:8704:-783.284,-73.1503,0	1/1:173:0,173:0:0:173:6174:-555.758,-52.0782,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:86:32,54:32:1152:54:1944:-149.319,0,-78.1016	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	0/1:97:31,66:31:1097:66:2348:-182.378,0,-69.8381	0/1:75:38,37:38:1360:37:1309:-95.5322,0,-100.123	1/1:81:0,81:0:0:81:2895:-260.739,-24.3834,0	1/1:50:3,47:3:108:47:1669:-140.42,-4.97633,0	1/1:132:0,132:0:0:132:4725:-425.407,-39.736,0	0/1:173:86,87:86:3035:87:3101:-227.204,0,-221.299	1/1:107:0,107:0:0:107:3791:-341.386,-32.2102,0	0/1:126:62,64:62:2224:64:2288:-168.252,0,-162.494	1/1:172:0,172:0:0:172:6171:-555.487,-51.7772,0	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/1:134:51,83:51:1828:83:2959:-226.206,0,-124.463	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:120:0,120:0:0:120:4247:-382.408,-36.1236,0	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:52:0,52:0:0:52:1815:-163.626,-15.6536,0	0/1:105:49,56:49:1764:56:2000:-148.666,0,-127.436	1/1:9:0,9:0:0:9:309:-28.1407,-2.70927,0	1/1:203:1,202:1:36:202:7173:-641.999,-57.5108,0	0/1:199:88,111:88:3140:111:3957:-296.416,0,-222.922	0/1:62:24,38:24:849:38:1342:-102.342,0,-58.064	1/1:81:0,81:0:0:81:2864:-257.994,-24.3834,0	0/1:254:107,147:107:3806:147:5224:-393.832,0,-266.275	0/1:118:69,49:69:2472:49:1762:-123.341,0,-187.212	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	1/1:83:0,83:0:0:83:2929:-263.842,-24.9855,0	1/1:70:0,70:0:0:70:2494:-224.712,-21.0721,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:108:0,108:0:0:108:3846:-346.306,-32.5112,0	0/1:53:20,33:20:705:33:1169:-89.5607,0,-47.8182	1/1:402:0,402:0:0:402:14302:-1286.88,-121.014,0	1/1:190:1,189:1:36:189:6761:-604.936,-53.5974,0	0/1:71:39,32:39:1381:32:1129:-80.5432,0,-103.214	0/1:94:55,39:55:1976:39:1403:-98.2725,0,-149.818	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	1/1:122:0,122:0:0:122:4363:-392.787,-36.7257,0	1/1:115:0,115:0:0:115:4109:-369.994,-34.6185,0	1/1:151:0,151:0:0:151:5401:-486.219,-45.4555,0	1/1:110:0,110:0:0:110:3910:-352.064,-33.1133,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	0/1:97:42,55:42:1504:55:1972:-148.555,0,-106.455	1/1:243:0,243:0:0:243:8685:-781.64,-73.1503,0	0/1:61:28,33:28:1004:33:1186:-88.6857,0,-72.313	1/1:98:0,98:0:0:98:3501:-315.299,-29.5009,0	1/1:77:0,77:0:0:77:2763:-248.911,-23.1793,0	1/1:29:0,29:0:0:29:1021:-92.1993,-8.72987,0	0/1:69:39,30:39:1404:30:1068:-75.661,0,-105.888	0/1:78:47,31:47:1688:31:1104:-76.1903,0,-128.727	1/1:131:0,131:0:0:131:4666:-420.1,-39.4349,0	1/1:112:0,112:0:0:112:4001:-360.278,-33.7154,0
chr04	3179326	.	A	T	45314.4	PASS	AB=0.457471;ABP=79.6616;AC=44;AF=0.234043;AN=188;AO=2255;CIGAR=1X;DP=10423;DPB=10423;DPRA=1.1128;EPP=2103.73;EPPR=4497.63;GTI=2;LEN=1;MEANALT=1.03922;MQM=59.1796;MQMR=59.903;NS=94;NUMALT=1;ODDS=0.90162;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80671;QR=292633;RO=8165;RPL=1866;RPP=2103.73;RPPR=4497.63;RPR=389;RUN=1;SAF=0;SAP=4899.68;SAR=2255;SRF=0;SRP=17733.1;SRR=8165;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:25,11:25:900:11:396:-25.1096,0,-70.4835	0/0:132:131,1:131:4678:1:36:0,-36.1377,-417.574	0/0:139:139,0:139:4988:0:0:0,-41.8432,-449.043	0/0:193:192,1:192:6870:1:36:0,-54.5005,-614.762	0/0:66:65,1:65:2321:1:36:0,-16.2697,-205.528	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.474	0/1:163:75,88:75:2670:88:3153:-234.552,0,-191.475	0/0:118:118,0:118:4198:0:0:0,-35.5215,-377.934	0/1:132:79,53:79:2836:53:1908:-132.225,0,-215.742	0/0:127:127,0:127:4540:0:0:0,-38.2308,-408.765	0/0:80:80,0:80:2846:0:0:0,-24.0824,-256.375	0/0:92:91,1:91:3264:1:25:0,-25.2585,-291.401	0/1:79:43,36:43:1548:36:1277:-91.4263,0,-115.767	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.029	0/1:57:24,33:24:864:33:1184:-89.6509,0,-60.9239	0/1:63:34,29:34:1224:29:1044:-75.265,0,-91.5022	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.027	0/0:43:41,2:41:1468:2:72:0,-6.10757,-125.571	0/1:55:42,13:42:1512:13:468:-25.9026,0,-119.818	0/1:264:140,124:140:5021:124:4460:-322.027,0,-372.562	0/1:141:72,69:72:2584:69:2484:-181.281,0,-190.335	0/1:119:50,69:50:1792:69:2438:-183.833,0,-125.74	0/1:122:47,75:47:1684:75:2677:-203.876,0,-114.894	0/0:141:132,8:132:4744:8:288:0,-16.2366,-400.845	0/1:68:27,41:27:960:41:1472:-112.306,0,-66.2462	0/1:295:185,110:185:6656:110:3918:-262.612,0,-509.823	0/1:256:138,118:138:4932:118:4221:-302.717,0,-366.964	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.93	0/1:369:209,160:209:7497:160:5725:-403.867,0,-563.672	0/1:133:70,63:70:2516:63:2241:-161.104,0,-186.427	0/0:142:142,0:142:5081:0:0:0,-42.7463,-457.327	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6253	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	1/1:3:0,3:0:0:3:108:-9.14631,-0.90309,0	0/0:224:224,0:224:8014:0:0:0,-67.4307,-721.269	0/0:173:172,0:172:6144:0:0:0,-51.7772,-552.699	0/0:77:77,0:77:2763:0:0:0,-23.1793,-248.893	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:224:125,99:125:4454:99:3539:-250.958,0,-333.587	0/0:65:65,0:65:2331:0:0:0,-19.5669,-210.026	0/1:124:74,50:74:2660:50:1796:-124.471,0,-202.318	0/1:86:52,34:52:1872:34:1209:-83.2256,0,-142.871	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:129:68,61:68:2448:61:2192:-158.682,0,-181.584	0/0:150:150,0:150:5384:0:0:0,-45.1545,-484.681	0/1:171:107,64:107:3848:64:2281:-154.046,0,-295.011	0/0:147:147,0:147:5269:0:0:0,-44.2514,-474.116	0/1:145:79,65:79:2824:65:2324:-165.692,0,-210.677	0/0:215:215,0:215:7713:0:0:0,-64.7214,-694.188	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:162:71,91:71:2541:91:3254:-244.011,0,-180.161	0/1:55:31,24:31:1116:24:856:-60.8045,0,-84.195	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:184:184,0:184:6612:0:0:0,-55.3895,-595.156	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.37	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:15:5,10:5:180:10:360:-28.2124,0,-12.0366	0/0:130:130,0:130:4661:0:0:0,-39.1339,-419.646	0/1:129:75,54:75:2700:54:1925:-134.691,0,-204.41	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:269:264,5:264:9427:5:180:0,-64.425,-831.828	0/1:176:101,75:101:3615:75:2665:-186.61,0,-272.574	0/1:85:48,37:48:1728:37:1324:-93.8163,0,-130.218	0/0:118:118,0:118:4210:0:0:0,-35.5215,-379.074	0/1:161:94,67:94:3372:67:2374:-165.252,0,-255.217	0/1:132:46,86:46:1637:86:3081:-237.752,0,-107.881	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8335	0/0:112:111,1:111:3992:1:36:0,-30.1171,-355.87	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.452	0/1:27:17,10:17:612:10:360:-24.6165,0,-47.2856	0/0:112:112,0:112:4032:0:0:0,-33.7154,-363.062	0/1:60:25,35:25:900:35:1252:-94.8488,0,-63.2234	0/0:214:214,0:214:7680:0:0:0,-64.4204,-691.205	0/0:180:180,0:180:6449:0:0:0,-54.1854,-580.454	0/1:148:85,63:85:3037:63:2264:-159.171,0,-229.006	0/1:141:99,42:99:3552:42:1508:-93.4716,0,-277.442	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:184:184,0:184:6620:0:0:0,-55.3895,-595.633	0/0:112:112,0:112:3994:0:0:0,-33.7154,-359.647	0/0:243:243,0:243:8709:0:0:0,-73.1503,-783.796	0/0:87:87,0:87:3098:0:0:0,-26.1896,-279.03	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:108:67,41:67:2412:41:1476:-100.306,0,-183.805	0/0:156:156,0:156:5574:0:0:0,-46.9607,-501.777	0/1:44:26,18:26:927:18:648:-45.4066,0,-70.502	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.322	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/1:107:50,57:50:1782:57:2048:-152.013,0,-128.451	0/1:71:26,45:26:936:45:1620:-124.689,0,-63.1863	0/0:149:149,0:149:5360:0:0:0,-44.8535,-482.529	0/0:115:115,0:115:4125:0:0:0,-34.6184,-371.431
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chr04	3236112	.	G	A	37305.2	PASS	AB=0.494172;ABP=4.27573;AC=43;AF=0.231183;AN=186;AO=2134;CIGAR=1X;DP=9101;DPB=9101;DPRA=1.16351;EPP=4363.15;EPPR=13752.9;GTI=3;LEN=1;MEANALT=1.02083;MQM=59.9953;MQMR=59.9983;NS=93;NUMALT=1;ODDS=1.08401;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76404;QR=248465;RO=6965;RPL=33;RPP=4354.73;RPPR=13752.9;RPR=2101;RUN=1;SAF=1;SAP=4628.25;SAR=2133;SRF=0;SRP=15127.3;SRR=6965;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:79:49,30:49:1751:30:1080:-73.7319,0,-134.092	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/0:180:180,0:180:6437:0:0:0,-54.1854,-579.416	0/0:252:251,1:251:8882:1:36:0,-72.2613,-795.769	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:65:26,39:26:936:39:1400:-106.732,0,-64.9925	0/0:125:125,0:125:4471:0:0:0,-37.6287,-402.559	0/1:101:52,49:52:1864:49:1737:-126.209,0,-137.635	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:77:77,0:77:2733:0:0:0,-23.1793,-246.212	0/0:132:132,0:132:4676:0:0:0,-39.736,-420.986	0/1:101:53,48:53:1878:48:1727:-125.311,0,-138.893	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/1:108:45,63:45:1607:63:2256:-170.792,0,-112.408	0/1:72:43,29:43:1529:29:1031:-71.4285,0,-116.227	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:47:28,19:28:995:19:684:-47.7419,0,-75.7156	0/1:177:102,75:102:3622:75:2679:-188.072,0,-272.904	0/1:160:73,87:73:2602:87:3116:-232.502,0,-186.263	0/1:151:47,104:47:1684:104:3720:-289.539,0,-106.391	0/1:132:75,57:75:2696:57:2036:-143.776,0,-203.148	0/1:77:68,9:68:2444:9:324:-6.32655,0,-197.035	0/1:92:51,41:51:1800:41:1457:-103.729,0,-134.585	0/1:200:102,98:102:3651:98:3491:-254.193,0,-268.588	0/1:281:159,122:159:5657:122:4375:-309.333,0,-424.66	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.87	0/1:235:128,107:128:4585:107:3823:-273.525,0,-342.071	0/1:53:31,22:31:1099:22:792:-55.6511,0,-83.2649	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.317	.:.:.:.:.:.:.:.	0/1:26:7,19:7:248:19:684:-54.0635,0,-14.8374	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	0/0:219:219,0:219:7830:0:0:0,-65.9256,-704.728	0/0:84:84,0:84:2969:0:0:0,-25.2865,-267.441	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:92:55,37:55:1958:37:1332:-92.4876,0,-148.799	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:122:67,55:67:2359:55:1966:-140.489,0,-175.841	0/1:70:32,38:32:1152:38:1360:-101.628,0,-82.918	0/0:78:78,0:78:2766:0:0:0,-23.4803,-249.182	0/1:137:67,70:67:2385:70:2497:-183.74,0,-173.665	0/0:117:116,0:116:4152:0:0:0,-34.9195,-373.503	0/1:198:130,68:130:4656:68:2443:-160.521,0,-359.598	0/0:87:87,0:87:3115:0:0:0,-26.1896,-280.576	0/1:136:58,78:58:2071:78:2799:-211.209,0,-145.72	0/0:108:108,0:108:3836:0:0:0,-32.5112,-345.437	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:156:70,86:70:2485:86:3077:-230.196,0,-176.941	0/1:76:34,42:34:1216:42:1508:-113.136,0,-86.8683	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:153:153,0:153:5442:0:0:0,-46.0576,-489.912	0/0:52:50,2:50:1775:2:72:0,-8.81684,-153.196	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:103:100,3:100:3584:3:108:0,-20.9309,-312.692	0/1:89:41,48:41:1459:48:1724:-128.654,0,-104.814	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:202:201,1:201:7185:1:36:0,-57.2098,-643.107	0/1:139:83,56:83:2980:56:1997:-138.159,0,-226.589	0/1:54:28,26:28:982:26:921:-66.9496,0,-72.4361	0/0:86:85,1:85:3029:1:36:0,-22.2903,-269.241	0/1:153:69,84:69:2468:84:3008:-224.894,0,-176.317	0/1:203:62,141:62:2224:141:5072:-395.512,0,-139.315	0/0:50:49,1:49:1760:1:36:0,-11.4532,-155.086	0/0:63:63,0:63:2246:0:0:0,-18.9649,-202.402	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:151:151,0:151:5366:0:0:0,-45.4555,-483.073	0/1:76:47,29:47:1679:29:1036:-70.6756,0,-128.518	0/0:209:209,0:209:7467:0:0:0,-62.9153,-672.072	0/0:174:174,0:174:6210:0:0:0,-52.3792,-558.998	0/1:42:18,24:18:648:24:860:-65.0786,0,-46.0086	0/1:104:49,54:49:1756:54:1940:-143.51,0,-126.958	0/1:12:3,9:3:104:9:324:-25.8935,0,-6.09045	0/0:174:174,0:174:6232:0:0:0,-52.3792,-560.975	0/0:134:134,0:134:4783:0:0:0,-40.338,-430.625	0/0:252:252,0:252:8996:0:0:0,-75.8596,-809.621	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.155	0/0:115:115,0:115:4100:0:0:0,-34.6184,-369.187	0/1:53:33,20:33:1176:20:720:-49.1742,0,-90.1932	0/0:170:170,0:170:6060:0:0:0,-51.1751,-545.506	0/1:27:14,13:14:495:13:464:-33.9697,0,-36.7552	0/0:93:93,0:93:3308:0:0:0,-27.9958,-297.938	0/0:92:92,0:92:3248:0:0:0,-27.6948,-292.54	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.786	0/1:87:33,54:33:1188:54:1924:-147.247,0,-81.039	0/1:89:29,60:29:1040:60:2160:-167.875,0,-67.1227	0/0:106:106,0:106:3769:0:0:0,-31.9092,-339.41	0/0:132:132,0:132:4727:0:0:0,-39.736,-425.588
chr04	3236117	.	G	T	151388	PASS	AB=0.503384;ABP=3.43649;AC=143;AF=0.768817;AN=186;AO=6902;CIGAR=1X;DP=9048;DPB=9048;DPRA=19.6587;EPP=13599.9;EPPR=4372.09;GTI=3;LEN=1;MEANALT=1.03261;MQM=59.9946;MQMR=59.9883;NS=93;NUMALT=1;ODDS=1.64049;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245171;QR=76233;RO=2142;RPL=164;RPP=13599.9;RPPR=4372.09;RPR=6738;RUN=1;SAF=0;SAP=14990.5;SAR=6902;SRF=0;SRP=4654.3;SRR=2142;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:29,49:29:1040:49:1736:-133.044,0,-70.434	1/1:106:0,106:0:0:106:3765:-339.05,-31.9092,0	1/1:175:0,175:0:0:175:6224:-560.262,-52.6803,0	1/1:251:1,250:1:36:250:8883:-795.865,-71.9603,0	1/1:46:0,46:0:0:46:1632:-147.169,-13.8474,0	1/1:11:0,11:0:0:11:377:-34.2579,-3.31133,0	0/1:64:39,25:39:1396:25:880:-60.2512,0,-106.673	1/1:123:0,123:0:0:123:4360:-392.579,-37.0267,0	0/1:103:51,52:51:1816:52:1860:-136.674,0,-132.715	1/1:42:0,42:0:0:42:1485:-133.943,-12.6433,0	1/1:76:0,76:0:0:76:2713:-244.414,-22.8783,0	1/1:135:0,135:0:0:135:4816:-433.58,-40.6391,0	0/1:99:47,52:47:1680:52:1856:-137.518,0,-121.685	1/1:62:1,61:1:36:61:2184:-193.228,-15.0656,0	0/1:109:65,44:65:2303:44:1563:-108.149,0,-174.716	0/1:73:30,43:30:1061:43:1540:-116.918,0,-73.8242	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:65:0,65:0:0:65:2316:-208.701,-19.567,0	0/1:47:19,28:19:675:28:1004:-76.5275,0,-46.9285	0/1:176:76,100:76:2696:100:3520:-264.031,0,-189.905	0/1:156:86,70:86:3080:70:2476:-176.134,0,-230.468	0/1:150:103,47:103:3671:47:1655:-104.081,0,-285.438	0/1:130:54,76:54:1924:76:2658:-200.331,0,-134.303	0/1:76:9,67:9:324:67:2376:-191.221,0,-6.62757	0/1:93:42,51:42:1503:51:1812:-135.366,0,-107.568	0/1:198:96,102:96:3409:102:3613:-265.774,0,-247.418	0/1:284:124,160:124:4436:160:5689:-426.639,0,-313.919	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	0/1:232:103,129:103:3645:129:4595:-343.877,0,-258.415	0/1:53:22,31:22:792:31:1112:-84.4368,0,-55.6511	1/1:102:0,102:0:0:102:3587:-323.04,-30.7051,0	.:.:.:.:.:.:.:.	0/1:26:19,7:19:671:7:248:-14.8374,0,-52.889	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:12:8,4:8:267:4:144:-9.70126,0,-20.743	1/1:217:0,217:0:0:217:7718:-694.656,-65.3235,0	1/1:82:0,82:0:0:82:2886:-259.976,-24.6845,0	1/1:64:0,64:0:0:64:2281:-205.552,-19.2659,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:93:39,54:39:1378:54:1932:-146.161,0,-96.3214	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:128:56,72:56:1986:72:2553:-191.488,0,-140.475	0/1:69:38,31:38:1340:31:1108:-79.2599,0,-100.126	1/1:79:0,79:0:0:79:2823:-254.309,-23.7814,0	0/1:135:69,66:69:2451:66:2343:-170.49,0,-180.206	1/1:116:0,116:0:0:116:4147:-373.413,-34.9195,0	0/1:202:76,126:76:2712:126:4474:-342.022,0,-183.516	1/1:90:0,90:0:0:90:3175:-285.975,-27.0927,0	0/1:133:78,55:78:2791:55:1964:-136.998,0,-211.393	1/1:104:0,104:0:0:104:3665:-330.056,-31.3071,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:157:87,70:87:3102:70:2495:-177.541,0,-232.145	0/1:71:39,32:39:1374:32:1125:-80.1829,0,-102.584	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:152:0,152:0:0:152:5396:-485.777,-45.7566,0	1/1:53:2,51:2:72:51:1816:-156.885,-9.11787,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:102:3,99:3:104:99:3521:-307.399,-21.0023,0	0/1:87:46,41:46:1641:41:1465:-105.955,0,-121.787	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:200:1,199:1:36:199:7090:-634.563,-56.6077,0	0/1:137:55,82:55:1949:82:2919:-221.704,0,-134.443	0/1:56:26,30:26:936:30:1076:-80.2952,0,-67.7018	1/1:88:1,87:1:36:87:3069:-272.842,-22.8924,0	0/1:150:83,67:83:2962:67:2361:-167.594,0,-221.658	0/1:205:143,60:143:5103:60:2125:-130.048,0,-397.946	1/1:51:1,49:1:36:49:1739:-153.196,-11.8131,0	1/1:63:0,63:0:0:63:2227:-200.694,-18.9649,0	1/1:57:1,56:1:36:56:2001:-176.765,-13.5604,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:146:0,146:0:0:146:5191:-467.333,-43.9504,0	0/1:75:28,47:28:996:47:1680:-128.84,0,-67.3776	1/1:203:0,203:0:0:203:7175:-645.813,-61.1091,0	1/1:170:0,170:0:0:170:6053:-544.876,-51.1751,0	0/1:43:24,19:24:864:19:676:-48.2237,0,-65.1383	0/1:103:54,49:54:1928:49:1731:-125.068,0,-142.791	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	1/1:171:0,171:0:0:171:6037:-543.44,-51.4761,0	1/1:135:0,135:0:0:135:4800:-432.159,-40.6391,0	1/1:247:0,247:0:0:247:8754:-787.86,-74.3544,0	1/1:76:0,76:0:0:76:2718:-244.863,-22.8783,0	1/1:112:0,112:0:0:112:3999:-360.101,-33.7154,0	0/1:58:22,36:22:758:36:1288:-98.7638,0,-51.0744	1/1:170:1,169:1:36:169:6003:-536.782,-47.5768,0	0/1:27:13,14:13:464:14:500:-37.2084,0,-33.9697	1/1:90:0,90:0:0:90:3212:-289.304,-27.0927,0	1/1:88:0,88:0:0:88:3129:-281.837,-26.4906,0	1/1:59:0,59:0:0:59:2085:-187.919,-17.7608,0	0/1:88:54,33:54:1921:33:1172:-79.2382,0,-146.616	0/1:90:61,29:61:2148:29:1040:-66.8217,0,-166.493	1/1:102:0,102:0:0:102:3624:-326.368,-30.7051,0	1/1:132:0,132:0:0:132:4707:-423.791,-39.736,0
chr04	3276342	.	C	T	240274	PASS	AB=0.583876;ABP=294.06;AC=141;AF=0.758065;AN=186;AO=8901;CIGAR=1X;DP=10893;DPB=10893;DPRA=0;EPP=19322.6;EPPR=4319.9;GTI=4;LEN=1;MEANALT=1.04301;MQM=56.7737;MQMR=59.6846;NS=93;NUMALT=1;ODDS=1.57047;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=314375;QR=70821;RO=1988;RPL=4315;RPP=20.9268;RPPR=42.442;RPR=4586;RUN=1;SAF=4314;SAP=21.1923;SAR=4587;SRF=899;SRP=42.442;SRR=1089;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:5,16:5:180:16:559:-44.2963,0,-10.2304	1/1:170:1,169:1:36:169:6003:-536.055,-47.5768,0	1/1:172:0,172:0:0:172:6042:-540.607,-51.7772,0	1/1:164:0,164:0:0:164:5776:-518.977,-49.3689,0	1/1:16:0,16:0:0:16:553:-50.0491,-4.81648,0	1/1:18:0,18:0:0:18:635:-57.4278,-5.41854,0	0/1:90:34,56:34:1197:56:1981:-151.314,0,-80.9353	1/1:198:0,198:0:0:198:7024:-629.391,-59.6039,0	0/1:109:32,77:32:1152:77:2719:-211.971,0,-71.1526	1/1:158:0,158:0:0:158:5558:-500.198,-47.5627,0	1/1:160:0,160:0:0:160:5664:-509.409,-48.1648,0	1/1:179:0,179:0:0:179:6315:-566.314,-53.8844,0	0/1:172:87,85:87:3070:85:2971:-215.432,0,-224.75	1/1:171:1,170:1:36:170:5930:-528.383,-47.8779,0	0/1:135:62,73:62:2205:73:2582:-191.818,0,-157.517	0/1:151:59,92:59:2112:92:3263:-247.975,0,-144.884	1/1:105:0,105:0:0:105:3743:-336.662,-31.6082,0	0/1:117:52,65:52:1860:65:2304:-172.172,0,-132.165	0/1:92:55,37:55:1934:37:1315:-90.771,0,-146.613	0/1:144:61,83:61:2179:83:2952:-222.278,0,-153.02	0/1:203:67,136:67:2387:136:4766:-367.507,0,-153.973	0/1:22:14,8:14:504:8:284:-19.2789,0,-39.0731	0/1:74:27,47:27:972:47:1652:-126.524,0,-65.5193	0/1:104:10,94:10:360:94:3336:-269.098,0,-1.43718	0/1:31:16,15:16:576:15:521:-37.8361,0,-42.8431	0/1:220:72,148:72:2580:148:5262:-406.925,0,-166.059	0/1:239:100,139:100:3571:139:4964:-374.063,0,-249.638	1/1:63:0,63:0:0:63:2206:-198.588,-18.9649,0	0/1:182:60,122:60:2147:122:4309:-333.02,0,-138.707	0/1:75:33,42:33:1188:42:1500:-112.645,0,-84.6432	1/1:85:0,85:0:0:85:3006:-270.556,-25.5876,0	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/1:8:4,4:4:144:4:140:-10.525,0,-10.9054	1/1:5:0,5:0:0:5:171:-15.707,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2096,-2.40824,0	1/1:9:0,9:0:0:9:324:-29.4646,-2.70927,0	1/1:374:1,372:1:36:372:13177:-1181.87,-109.026,0	1/1:95:0,94:0:0:94:3323:-298.764,-28.2968,0	1/1:133:0,133:0:0:133:4677:-419.239,-40.037,0	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	0/1:139:58,81:58:2051:81:2891:-218.259,0,-143.009	1/1:95:0,94:0:0:94:3304:-296.638,-28.2968,0	0/1:90:29,61:29:1040:61:2165:-167.42,0,-66.8217	0/1:147:75,72:75:2682:72:2558:-186.086,0,-197.37	1/1:133:0,133:0:0:133:4638:-417.216,-40.037,0	0/1:43:17,26:17:608:26:909:-69.1647,0,-42.0961	0/1:107:37,70:37:1303:70:2495:-191.019,0,-85.3604	0/1:121:35,86:35:1256:86:2977:-231.163,0,-76.9207	1/1:110:0,110:0:0:110:3902:-350.636,-33.1133,0	0/1:152:68,84:68:2408:84:2980:-222.488,0,-171.208	1/1:92:0,92:0:0:92:3227:-290.615,-27.6948,0	0/1:5:2,3:2:68:3:108:-8.56275,0,-4.95256	0/1:107:38,69:38:1368:69:2464:-189.35,0,-89.862	0/1:53:20,33:20:708:33:1165:-89.1206,0,-48.0873	1/1:14:0,14:0:0:14:500:-45.328,-4.21442,0	1/1:125:0,125:0:0:125:4423:-397.423,-37.6288,0	1/1:22:0,22:0:0:22:783:-70.7041,-6.62266,0	1/1:5:0,5:0:0:5:176:-16.1828,-1.50515,0	0/1:14:6,8:6:216:8:280:-21.3245,0,-15.5761	1/1:147:0,147:0:0:147:5212:-468.129,-44.2514,0	0/1:202:113,89:113:4027:89:3138:-221.457,0,-301.807	.:.:.:.:.:.:.:.	1/1:207:0,207:0:0:207:7323:-658.915,-62.3132,0	0/1:178:52,126:52:1860:126:4444:-346.215,0,-114.093	0/1:64:18,46:18:648:46:1652:-129.495,0,-39.386	1/1:64:0,64:0:0:64:2275:-204.649,-19.2659,0	0/1:113:33,80:33:1175:80:2828:-220.283,0,-72.0382	0/1:131:63,68:63:2241:68:2384:-175.187,0,-162.511	1/1:139:0,139:0:0:139:4946:-443.856,-41.8432,0	1/1:103:0,103:0:0:103:3615:-324.753,-31.0061,0	1/1:174:0,173:0:0:173:6124:-550.782,-52.0782,0	0/1:30:14,16:14:504:16:564:-42.0285,0,-36.6625	1/1:97:0,97:0:0:97:3362:-302.292,-29.1999,0	0/1:109:55,54:55:1953:54:1916:-139.671,0,-142.264	1/1:164:0,164:0:0:164:5762:-517.895,-49.3689,0	1/1:211:0,211:0:0:211:7424:-667.703,-63.5173,0	0/1:37:14,23:14:491:23:820:-62.6371,0,-33.383	0/1:181:86,95:86:3053:95:3358:-247.095,0,-220.469	0/1:12:3,9:3:108:9:320:-25.4881,0,-6.46281	1/1:167:0,167:0:0:167:5878:-528.47,-50.272,0	1/1:142:0,142:0:0:142:5019:-450.488,-42.7463,0	1/1:198:0,198:0:0:198:6999:-629.667,-59.6039,0	1/1:132:0,132:0:0:132:4651:-418.505,-39.736,0	1/1:177:0,177:0:0:177:6256:-562.159,-53.2823,0	0/1:166:72,94:72:2555:94:3326:-249.162,0,-180.095	1/1:290:1,289:1:36:289:10200:-912.563,-83.7004,0	0/1:44:26,18:26:900:18:633:-44.0097,0,-68.021	1/1:173:0,173:0:0:173:6121:-549.097,-52.0782,0	1/1:135:1,134:1:36:134:4710:-419.977,-37.9028,0	1/1:111:0,111:0:0:111:3953:-355.403,-33.4143,0	0/1:177:93,84:93:3296:84:2984:-215.138,0,-243.555	0/1:149:103,46:103:3696:46:1631:-102.014,0,-287.979	1/1:164:1,163:1:36:163:5749:-512.966,-45.7706,0	1/1:253:0,253:0:0:253:8914:-800.4,-76.1606,0
chr04	3287068	.	G	A	126772	PASS	AB=0.49646;ABP=3.36386;AC=141;AF=0.75;AN=188;AO=4880;CIGAR=1X;DP=6524;DPB=6524;DPRA=0;EPP=2574.61;EPPR=1228.36;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9832;MQMR=59.9732;NS=94;NUMALT=1;ODDS=3.2556;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174824;QR=58694;RO=1640;RPL=1238;RPP=2574.61;RPPR=1233.46;RPR=3642;RUN=1;SAF=4880;SAP=10599.8;SAR=0;SRF=1639;SRP=3555.54;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:12,11:12:428:11:392:-28.6964,0,-31.9351	1/1:93:0,93:0:0:93:3329:-299.826,-27.9958,0	1/1:65:1,64:1:36:64:2292:-202.943,-15.9687,0	1/1:130:0,130:0:0:130:4668:-420.28,-39.1339,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:122:63,59:63:2244:59:2093:-151.913,0,-165.498	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0	0/1:65:22,43:22:788:43:1544:-119.686,0,-51.6778	1/1:96:1,95:1:36:95:3408:-303.336,-25.3006,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:74:27,47:27:972:47:1672:-128.491,0,-65.5217	1/1:67:0,67:0:0:67:2380:-214.456,-20.169,0	0/1:43:22,21:22:788:21:756:-55.4229,0,-58.3005	0/1:47:18,29:18:648:29:1040:-79.766,0,-44.5035	1/1:65:0,65:0:0:65:2325:-209.509,-19.567,0	0/1:63:36,27:36:1292:27:968:-68.4725,0,-97.6189	0/1:38:25,13:25:884:13:468:-31.0205,0,-68.4392	0/1:161:86,75:86:3072:75:2692:-194.058,0,-228.243	0/1:80:42,38:42:1512:38:1364:-98.9783,0,-112.292	0/1:68:52,16:52:1860:16:568:-30.9818,0,-147.21	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:27:3,24:3:104:24:864:-69.9548,0,-1.575	0/1:58:37,21:37:1301:21:756:-50.9075,0,-99.9295	0/1:226:107,119:107:3836:119:4272:-316.623,0,-277.403	0/1:146:72,74:72:2569:74:2656:-195.335,0,-187.508	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:156:83,72:83:2972:72:2580:-185.43,0,-220.693	0/1:89:44,45:44:1576:45:1601:-117.587,0,-115.34	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	1/1:182:0,182:0:0:182:6529:-587.69,-54.7875,0	1/1:96:1,95:1:36:95:3416:-304.055,-25.3006,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:105:48,57:48:1728:57:2040:-152.259,0,-124.197	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:71:38,32:38:1364:32:1146:-82.0176,0,-101.629	0/1:43:23,20:23:828:20:713:-51.5522,0,-61.8998	1/1:49:0,49:0:0:49:1758:-158.504,-14.7505,0	0/1:75:30,45:30:1080:45:1593:-121.081,0,-74.565	0/1:93:33,60:33:1163:60:2160:-166.671,0,-76.9803	0/1:120:62,58:62:2228:58:2080:-151.347,0,-164.66	1/1:96:0,96:0:0:96:3440:-309.813,-28.8989,0	0/1:98:46,52:46:1648:52:1868:-138.898,0,-119.108	1/1:100:0,100:0:0:100:3576:-322.031,-30.103,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:75:31,44:31:1112:44:1557:-117.842,0,-77.8141	0/1:50:31,18:31:1100:18:648:-43.5416,0,-84.2001	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:92:1,91:1:36:91:3261:-290.111,-24.0965,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:22:11,11:11:388:11:396:-29.3601,0,-28.6347	1/1:53:0,53:0:0:53:1881:-169.567,-15.9546,0	0/1:84:47,37:47:1665:37:1332:-94.8959,0,-124.849	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:166:0,166:0:0:166:5938:-534.509,-49.971,0	0/1:145:84,61:84:3020:61:2180:-152.817,0,-228.294	0/1:48:27,21:27:964:21:756:-53.9178,0,-72.6274	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	0/1:109:43,66:43:1548:66:2357:-179.575,0,-106.801	0/1:86:60,26:60:2156:26:926:-57.7684,0,-168.418	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:36:0,35:0:0:35:1256:-112.985,-10.5361,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	0/1:49:20,29:20:708:29:1025:-77.8102,0,-49.2951	1/1:103:0,103:0:0:103:3704:-333.56,-31.0061,0	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	0/1:60:24,36:24:860:36:1276:-97.0813,0,-59.66	0/1:99:63,36:63:2260:36:1292:-86.7818,0,-173.861	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:103:1,102:1:36:102:3668:-326.724,-27.4078,0	1/1:82:0,82:0:0:82:2935:-264.384,-24.6845,0	1/1:185:0,185:0:0:185:6632:-596.102,-55.6906,0	1/1:82:1,81:1:36:81:2912:-258.716,-21.0862,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:74:28,46:28:1004:46:1648:-126.332,0,-68.3996	1/1:117:0,117:0:0:117:4200:-378.18,-35.2205,0	0/1:26:13,13:13:464:13:460:-33.9086,0,-34.2707	1/1:63:0,63:0:0:63:2258:-203.483,-18.9649,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:44:0,44:0:0:44:1573:-141.86,-13.2453,0	0/1:71:31,40:31:1112:40:1413:-106.092,0,-79.0182	0/1:61:37,24:37:1328:24:845:-58.0043,0,-101.459	1/1:75:1,74:1:36:74:2664:-236.407,-18.979,0	1/1:74:0,74:0:0:74:2644:-238.207,-22.2762,0
chr04	3287077	.	A	G	28079.2	PASS	AB=0.510522;ABP=6.16321;AC=46;AF=0.244681;AN=188;AO=1679;CIGAR=1X;DP=6588;DPB=6588;DPRA=1.03778;EPP=3648.91;EPPR=10649.7;GTI=0;LEN=1;MEANALT=1.02;MQM=59.9738;MQMR=59.9868;NS=94;NUMALT=1;ODDS=2.65972;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59774;QR=175811;RO=4907;RPL=1678;RPP=3640.23;RPPR=10632.4;RPR=1;RUN=1;SAF=1678;SAP=3640.23;SAR=1;SRF=4905;SRP=10641.1;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:11,14:11:392:14:500:-37.8104,0,-28.0943	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:64:63,1:63:2268:1:36:0,-15.6676,-200.784	0/0:128:128,0:128:4566:0:0:0,-38.5318,-411.104	0/0:54:54,0:54:1917:0:0:0,-16.2556,-172.805	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:123:59,64:59:2109:64:2277:-168.164,0,-153.051	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:65:42,23:42:1512:23:828:-55.2772,0,-116.808	0/0:100:99,1:99:3533:1:36:0,-26.5047,-314.58	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:75:48,27:48:1720:27:954:-63.5974,0,-132.508	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:44:21,23:21:756:23:820:-60.8772,0,-55.1219	0/1:47:29,18:29:1044:18:640:-43.7809,0,-80.1264	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:65:27,38:27:968:38:1364:-103.494,0,-67.8704	0/1:40:13,27:13:468:27:964:-75.0356,0,-30.4184	0/1:163:76,87:76:2732:87:3059:-226.468,0,-197.054	0/1:79:38,41:38:1368:41:1465:-108.364,0,-99.6395	0/1:71:16,55:16:572:55:1927:-152.328,0,-30.4403	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/0:26:24,2:24:849:2:72:0,-0.990057,-69.8911	0/1:61:21,40:21:752:40:1421:-109.823,0,-49.6434	0/1:229:121,108:121:4291:108:3844:-277.218,0,-317.429	0/1:150:77,73:77:2772:73:2628:-191.612,0,-204.566	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:158:72,86:72:2588:86:3064:-228.425,0,-185.606	0/1:88:44,44:44:1569:44:1557:-113.929,0,-115.009	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5027	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/0:181:181,0:181:6504:0:0:0,-54.4864,-585.441	0/0:96:95,1:95:3397:1:36:0,-25.3006,-302.345	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:110:58,52:58:2076:52:1849:-133.575,0,-153.993	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:71:32,39:32:1133:39:1387:-103.755,0,-80.9035	0/1:46:21,25:21:756:25:875:-65.2172,0,-54.5198	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:77:47,30:47:1647:30:1050:-71.5816,0,-125.332	0/1:94:59,35:59:2112:35:1256:-85.0485,0,-162.052	0/1:121:58,63:58:2088:63:2249:-166.247,0,-151.765	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/1:99:51,48:51:1836:48:1716:-124.922,0,-135.719	0/0:105:105,0:105:3749:0:0:0,-31.6081,-337.419	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:76:44,32:44:1584:32:1137:-79.7587,0,-119.973	0/1:50:19,31:19:684:31:1101:-84.3469,0,-46.8388	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/1:85:37,48:37:1332:48:1700:-127.696,0,-94.5948	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:166:166,0:166:5960:0:0:0,-49.971,-536.403	0/1:149:61,88:61:2188:88:3126:-236.625,0,-152.332	0/1:51:24,27:24:860:27:964:-71.7243,0,-62.3693	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:113:67,45:67:2404:45:1599:-110.124,0,-182.541	0/1:86:26,60:26:912:60:2148:-167.699,0,-56.5045	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:76:76,0:76:2702:0:0:0,-22.8783,-243.421	0/1:49:29,20:29:1021:20:720:-50.3783,0,-77.4498	0/0:102:102,0:102:3649:0:0:0,-30.7051,-328.613	0/0:88:87,0:87:3124:0:0:0,-26.1896,-281.174	0/1:63:36,27:36:1292:27:938:-65.7644,0,-97.6189	0/1:101:39,62:39:1381:62:2232:-170.74,0,-94.1827	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:104:104,0:104:3705:0:0:0,-31.3071,-333.652	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.151	0/0:187:187,0:187:6690:0:0:0,-56.2926,-602.173	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:75:46,29:46:1652:29:1035:-70.8858,0,-126.391	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/1:26:12,14:12:432:14:500:-37.5094,0,-31.3944	0/0:62:62,0:62:2217:0:0:0,-18.6639,-199.793	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:75:41,34:41:1472:34:1212:-86.8091,0,-110.199	0/1:59:23,36:23:828:36:1292:-98.823,0,-57.0833	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005
chr04	3308171	.	T	C	54166.9	PASS	AB=0.240566;ABP=2109.95;AC=142;AF=0.755319;AN=188;AO=2890;CIGAR=1X;DP=5656;DPB=5656;DPRA=0;EPP=6269.88;EPPR=5944.31;GTI=24;LEN=1;MEANALT=1.02128;MQM=59.6183;MQMR=53.9171;NS=94;NUMALT=1;ODDS=0.460165;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103567;QR=99237;RO=2764;RPL=0;RPP=6278.57;RPPR=6004.96;RPR=2890;RUN=1;SAF=2889;SAP=6269.88;SAR=1;SRF=2757;SRP=5944.31;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:23,4:23:828:4:144:-5.18581,0,-66.3199	1/1:27:0,27:0:0:27:968:-87.4154,-8.12781,0	1/1:104:0,104:0:0:104:3713:-334.3,-31.3071,0	1/1:123:0,123:0:0:123:4424:-398.318,-37.0267,0	1/1:9:0,9:0:0:9:316:-28.7756,-2.70927,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:132:89,43:89:3204:43:1532:-98.4302,0,-247.772	1/1:47:0,47:0:0:47:1692:-152.554,-14.1484,0	0/1:70:54,16:54:1944:16:564:-30.01,0,-152.867	1/1:35:0,35:0:0:35:1260:-113.599,-10.5361,0	1/1:23:0,23:0:0:23:828:-74.8394,-6.92369,0	1/1:38:0,38:0:0:38:1360:-122.579,-11.4391,0	0/1:56:36,20:36:1296:20:716:-47.9067,0,-97.6101	1/1:36:2,34:2:72:34:1224:-103.612,-4.00036,0	0/1:51:38,13:38:1364:13:468:-27.1048,0,-107.114	0/1:34:21,13:21:756:13:468:-32.2246,0,-58.0103	1/1:25:0,25:0:0:25:896:-80.9378,-7.52575,0	0/1:38:34,4:34:1224:4:144:-1.87448,0,-98.4623	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.7325	0/1:177:146,31:146:5244:31:1108:-46.7463,0,-417.794	0/1:103:78,25:78:2800:25:900:-50.2965,0,-219.677	0/1:83:66,17:66:2360:17:612:-30.427,0,-187.532	0/1:106:78,28:78:2796:28:1008:-59.1178,0,-219.275	0/1:36:5,31:5:180:31:1101:-88.5597,0,-5.69151	0/1:69:56,13:56:2016:13:468:-21.6886,0,-160.174	0/1:210:161,49:161:5780:49:1760:-95.4631,0,-455.831	0/1:200:149,51:149:5347:51:1832:-104.933,0,-418.097	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:232:186,46:186:6680:46:1637:-77.776,0,-527.985	0/1:112:82,30:82:2944:30:1076:-63.4283,0,-228.436	1/1:82:0,82:0:0:82:2925:-263.46,-24.6845,0	0/1:2:1,1:1:36:1:36:-2.9945,0,-2.99111	0/1:14:8,6:8:288:6:212:-15.2104,0,-21.9917	1/1:2:0,2:0:0:2:72:-6.81819,-0.60206,0	1/1:5:0,4:0:0:4:144:-12.9538,-1.20412,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.31438	1/1:74:0,74:0:0:74:2656:-239.28,-22.2762,0	1/1:61:0,61:0:0:61:2184:-196.804,-18.3628,0	1/1:18:0,18:0:0:18:639:-57.8365,-5.41854,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:141:107,34:107:3848:34:1220:-67.657,0,-303.207	1/1:16:0,16:0:0:16:576:-52.1657,-4.81648,0	0/1:120:88,32:88:3160:32:1152:-67.8155,0,-246.012	0/1:49:39,10:39:1400:10:360:-17.9915,0,-110.979	1/1:20:0,20:0:0:20:720:-65.1254,-6.0206,0	0/1:83:70,13:70:2520:13:468:-17.4723,0,-201.561	0/1:99:83,16:83:2972:16:572:-21.9986,0,-236.205	0/1:171:137,34:137:4912:34:1216:-58.2588,0,-388.815	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:66:0,66:0:0:66:2372:-213.733,-19.868,0	1/1:56:1,55:1:36:55:1960:-173.036,-13.2594,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.669	0/1:96:78,18:78:2800:18:644:-29.3835,0,-222.443	0/1:38:22,16:22:788:16:572:-40.3725,0,-59.6565	1/1:8:0,8:0:0:8:284:-25.9,-2.40824,0	1/1:109:1,108:1:36:108:3838:-342,-29.2191,0	1/1:8:0,8:0:0:8:288:-26.265,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.801	1/1:43:0,43:0:0:43:1540:-138.837,-12.9443,0	0/1:59:41,18:41:1472:18:648:-40.8829,0,-114.522	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:136:3,133:3:108:133:4766:-418.944,-30.8692,0	0/1:181:143,38:143:5144:38:1364:-68.5673,0,-406.042	0/1:49:36,13:36:1277:13:464:-27.347,0,-99.1343	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:153:109,44:109:3900:44:1584:-96.7916,0,-303.675	0/1:125:108,17:108:3880:17:612:-17.7847,0,-310.128	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:30:0,30:0:0:30:1076:-97.1365,-9.0309,0	1/1:23:0,23:0:0:23:824:-74.481,-6.92369,0	0/0:18:17,1:17:612:1:36:0,-1.82026,-50.822	1/1:39:0,39:0:0:39:1390:-125.386,-11.7402,0	0/1:79:58,21:58:2088:21:756:-44.5859,0,-163.486	1/1:45:1,44:1:36:44:1580:-138.876,-9.95318,0	1/1:117:0,117:0:0:117:4200:-378.162,-35.2205,0	0/1:85:63,22:63:2256:22:792:-46.0099,0,-176.402	0/1:105:87,18:87:3132:18:644:-26.6566,0,-249.036	0/1:4:1,3:1:36:3:108:-8.85416,0,-2.38511	1/1:50:1,49:1:36:49:1749:-154.067,-11.4583,0	1/1:40:0,40:0:0:40:1440:-129.894,-12.0412,0	1/1:67:0,67:0:0:67:2404:-216.602,-20.169,0	1/1:32:0,32:0:0:32:1148:-103.623,-9.63296,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:43:36,7:36:1296:7:252:-10.0823,0,-103.827	1/1:46:0,46:0:0:46:1648:-148.515,-13.8474,0	0/1:32:21,11:21:756:11:392:-25.7923,0,-58.5624	1/1:23:0,23:0:0:23:824:-74.4751,-6.92369,0	1/1:27:0,27:0:0:27:968:-87.421,-8.12781,0	1/1:22:0,22:0:0:22:792:-71.4151,-6.62266,0	0/1:42:24,18:24:849:18:648:-45.9994,0,-63.7403	0/1:66:54,12:54:1936:12:432:-19.3532,0,-154.137	1/1:128:1,126:1:36:126:4532:-404.439,-34.9948,0	1/1:41:0,41:0:0:41:1449:-130.686,-12.3422,0
chr04	3308207	.	G	C	49028.8	PASS	AB=0.760251;ABP=2069.11;AC=47;AF=0.25;AN=188;AO=2702;CIGAR=1X;DP=5518;DPB=5518;DPRA=2.29791;EPP=5826.98;EPPR=6096.17;GTI=23;LEN=1;MEANALT=1.04;MQM=54.0056;MQMR=59.6272;NS=94;NUMALT=1;ODDS=0.247389;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95870;QR=100268;RO=2814;RPL=2701;RPP=5861.65;RPPR=6104.85;RPR=1;RUN=1;SAF=2696;SAP=5818.33;SAR=6;SRF=2813;SRP=6104.85;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:4,23:4:144:23:824:-65.964,0,-5.18581	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4154	0/0:102:102,0:102:3651:0:0:0,-30.7051,-328.732	0/0:120:120,0:120:4283:0:0:0,-36.1236,-385.637	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8987	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:126:38,88:38:1355:88:3123:-242.399,0,-84.3176	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.885	0/1:68:16,52:16:576:52:1818:-142.886,0,-31.6967	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.001	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4786	0/0:37:37,0:37:1307:0:0:0,-11.1381,-117.816	0/1:54:19,35:19:669:35:1207:-91.5648,0,-44.275	0/0:36:36,0:36:1267:0:0:0,-10.8371,-114.315	0/1:50:13,37:13:468:37:1303:-101.653,0,-27.4058	0/1:32:11,21:11:388:21:743:-57.4474,0,-25.6244	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1305	0/1:38:4,34:4:144:34:1203:-96.73,0,-1.87448	0/1:16:7,9:7:252:9:320:-24.0729,0,-18.2101	0/1:175:31,144:31:1099:144:5129:-408.168,0,-46.5369	0/1:103:25,78:25:878:78:2738:-214.133,0,-48.3108	0/1:78:14,64:14:489:64:2261:-180.132,0,-20.8586	0/1:105:27,78:27:968:78:2758:-216.25,0,-55.8222	0/1:37:31,6:31:1089:6:216:-8.62434,0,-87.1782	0/1:69:12,57:12:432:57:2040:-162.337,0,-18.4501	0/1:203:48,155:48:1716:155:5484:-431.614,0,-93.6124	0/1:194:50,144:50:1792:144:5140:-401.388,0,-103.141	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:224:45,179:45:1595:179:6374:-504.612,0,-76.407	0/1:108:30,78:30:1071:78:2778:-216.484,0,-64.1852	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.104	0/1:2:1,1:1:36:1:36:-2.99111,0,-2.9945	0/1:14:6,8:6:208:8:288:-21.9917,0,-14.8447	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45022	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:3,2:3:108:2:72:-5.31438,0,-8.57002	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.755	0/0:58:58,0:58:2049:0:0:0,-17.4597,-184.658	0/0:18:18,0:18:614:0:0:0,-5.41854,-55.5765	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:142:35,107:35:1240:107:3805:-299.027,0,-69.1536	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5656	0/1:118:30,88:30:1076:88:3125:-243.831,0,-61.5802	0/1:48:10,38:10:360:38:1342:-106.226,0,-18.2925	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7644	0/1:81:13,68:13:464:68:2430:-194.178,0,-17.7123	0/1:98:16,82:16:567:82:2917:-231.651,0,-21.847	0/1:168:33,135:33:1168:135:4791:-379.335,0,-54.8439	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.854	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.378	1/1:6:0,6:0:0:6:216:-19.7762,-1.80618,0	0/1:90:16,74:16:572:74:2652:-210.979,0,-24.7207	0/1:37:16,21:16:572:21:756:-57.1244,0,-40.6735	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2592	0/0:108:106,2:106:3779:2:72:0,-25.6794,-333.459	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.901	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:1,3:1:36:3:108:-8.86823,0,-2.39415	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.604	0/1:56:16,40:16:576:40:1414:-110.293,0,-35.3091	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:129:126,3:126:4483:3:108:0,-28.762,-393.509	0/1:178:38,139:38:1360:139:4905:-385.941,0,-69.0518	0/1:49:13,36:13:464:36:1238:-96.5093,0,-27.347	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:151:44,107:44:1565:107:3779:-293.758,0,-95.6736	0/1:121:17,104:17:604:104:3720:-297.296,0,-18.266	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2585	0/0:22:22,0:22:765:0:0:0,-6.62266,-69.1654	1/1:19:1,18:1:36:18:627:-52.3733,-2.1213,0	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.805	0/1:77:19,57:19:665:57:2031:-158.936,0,-36.936	0/0:44:43,1:43:1533:1:36:0,-9.65215,-134.654	0/0:113:113,0:113:4047:0:0:0,-34.0164,-364.4	0/1:77:21,56:21:752:56:1979:-154.21,0,-44.8188	0/1:104:17,87:17:612:87:3091:-246.01,0,-24.0804	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.85416	0/0:48:47,1:47:1688:1:36:0,-10.8563,-148.582	0/0:41:41,0:41:1446:0:0:0,-12.3422,-130.431	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.006	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.05	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:42:7,35:7:252:35:1236:-98.7321,0,-10.3833	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.037	0/1:32:11,21:11:383:21:752:-58.2063,0,-24.9755	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1201	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.6999	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.1706	0/1:42:17,25:17:603:25:877:-65.6212,0,-41.947	0/1:65:12,53:12:414:53:1900:-151.202,0,-18.022	0/0:124:123,1:123:4400:1:36:0,-33.732,-392.568	0/0:40:40,0:40:1415:0:0:0,-12.0412,-127.628
chr04	3370469	.	G	A	68788.4	PASS	AB=0.473378;ABP=16.7688;AC=145;AF=0.771277;AN=188;AO=3333;CIGAR=1X;DP=4519;DPB=4519;DPRA=0;EPP=7240.53;EPPR=2571.86;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9736;MQMR=59.9738;NS=94;NUMALT=1;ODDS=0.694398;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118007;QR=40741;RO=1183;RPL=0;RPP=7240.53;RPPR=2563.18;RPR=3333;RUN=1;SAF=0;SAP=7240.53;SAR=3333;SRF=1;SRP=2563.18;SRR=1182;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:9,6:9:320:6:197:-13.5359,0,-24.6269	1/1:43:0,43:0:0:43:1528:-137.813,-12.9443,0	1/1:57:0,57:0:0:57:2031:-183.062,-17.1587,0	1/1:102:0,102:0:0:102:3610:-325.103,-30.7051,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:57:26,31:26:867:31:1091:-81.34,0,-61.1741	1/1:44:0,44:0:0:44:1562:-140.87,-13.2453,0	0/1:65:29,36:29:1012:36:1260:-94.1327,0,-71.8216	1/1:24:1,23:1:36:23:816:-70.1634,-3.62645,0	1/1:37:1,36:1:36:36:1288:-112.625,-7.53984,0	1/1:95:0,94:0:0:94:3315:-298.349,-28.2968,0	0/1:78:34,44:34:1115:44:1567:-117.841,0,-77.1639	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	0/1:44:17,27:17:595:27:960:-73.471,0,-40.6314	0/1:53:24,29:24:792:29:1036:-77.5993,0,-55.6319	1/1:12:0,12:0:0:12:410:-37.2265,-3.61236,0	0/1:24:8,16:8:280:16:546:-42.2354,0,-18.2968	0/1:33:10,23:10:343:23:820:-64.1885,0,-21.2666	0/1:49:31,18:31:1077:18:644:-43.5401,0,-82.4855	0/1:74:47,27:47:1613:27:951:-63.6281,0,-123.177	0/1:37:22,15:22:762:15:532:-37.075,0,-57.7595	0/1:49:27,22:27:932:22:788:-56.492,0,-69.4392	1/1:8:0,8:0:0:8:288:-26.2628,-2.40824,0	0/1:38:19,19:19:635:19:684:-50.4512,0,-46.0234	0/1:121:39,82:39:1333:82:2908:-225.53,0,-83.8356	0/1:131:79,52:79:2778:52:1853:-127.613,0,-210.698	1/1:31:0,31:0:0:31:1090:-98.4076,-9.33193,0	0/1:110:54,56:54:1872:56:1990:-146.26,0,-135.643	0/1:56:32,24:32:1135:24:851:-60.0518,0,-85.6004	1/1:69:0,69:0:0:69:2459:-221.564,-20.7711,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:11:4,7:4:129:7:252:-19.7176,0,-8.61633	1/1:194:0,193:0:0:193:6790:-610.825,-58.0988,0	1/1:50:2,48:2:68:48:1715:-148.177,-8.59379,0	1/1:59:1,58:1:36:58:2030:-179.372,-14.1625,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:34:21,13:21:704:13:464:-31.8625,0,-53.4341	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:25:15,10:15:527:10:351:-24.4009,0,-40.2344	0/1:37:23,14:23:773:14:504:-34.56,0,-58.7428	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/1:70:45,25:45:1559:25:891:-59.4367,0,-119.525	0/1:70:39,31:39:1357:31:1108:-78.9589,0,-101.354	0/1:65:39,26:39:1313:26:926:-64.0911,0,-98.8926	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:64:39,25:39:1374:25:896:-61.6944,0,-104.691	0/1:26:16,10:16:533:10:356:-24.5545,0,-40.4567	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	1/1:60:0,60:0:0:60:2114:-190.525,-18.0618,0	1/1:17:0,17:0:0:17:599:-54.2381,-5.11751,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:110:59,51:59:2044:51:1793:-128.535,0,-151.115	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:106:0,105:0:0:105:3738:-336.407,-31.6082,0	0/1:85:31,54:31:1089:54:1901:-145.777,0,-72.7298	0/1:38:22,16:22:760:16:572:-40.3743,0,-57.2767	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:77:47,30:47:1638:30:1055:-72.0796,0,-124.525	0/1:57:39,18:39:1337:18:640:-40.7706,0,-103.464	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:24:0,24:0:0:24:829:-74.9239,-7.22472,0	1/1:29:0,29:0:0:29:1028:-92.833,-8.72987,0	0/1:16:7,9:7:239:9:320:-24.3259,0,-17.0262	1/1:47:0,47:0:0:47:1650:-148.785,-14.1484,0	0/1:71:34,37:34:1179:37:1328:-98.4491,0,-85.0377	1/1:86:0,86:0:0:86:2972:-267.709,-25.8886,0	1/1:55:0,55:0:0:55:1957:-176.404,-16.5567,0	0/1:57:33,24:33:1142:24:845:-59.2084,0,-85.9225	0/1:53:31,22:31:1072:22:784:-54.9293,0,-80.8305	0/1:5:1,4:1:36:4:136:-11.0704,0,-2.09312	1/1:46:0,46:0:0:46:1644:-147.311,-13.8474,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:113:0,113:0:0:113:3977:-358.12,-34.0164,0	1/1:48:0,48:0:0:48:1693:-152.654,-14.4494,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:25:7,18:7:215:18:611:-47.7808,0,-12.1256	1/1:99:0,99:0:0:99:3491:-314.401,-29.802,0	0/1:25:12,13:12:395:13:464:-34.5718,0,-28.3398	1/1:64:1,63:1:27:63:2210:-196.376,-16.5661,0	1/1:63:0,63:0:0:63:2211:-199.253,-18.9649,0	1/1:43:0,43:0:0:43:1535:-138.442,-12.9443,0	0/1:78:38,40:38:1304:40:1407:-103.446,0,-94.1759	0/1:70:49,21:49:1678:21:752:-46.9342,0,-130.23	1/1:35:0,35:0:0:35:1218:-109.921,-10.5361,0	1/1:81:0,81:0:0:81:2874:-258.897,-24.3834,0
chr04	3370484	.	C	T	70329.1	PASS	AB=0.47205;ABP=18.305;AC=145;AF=0.771277;AN=188;AO=3362;CIGAR=1X;DP=4558;DPB=4558;DPRA=0;EPP=7303.5;EPPR=2593.58;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9601;MQMR=59.9832;NS=94;NUMALT=1;ODDS=0.7236;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120071;QR=42275;RO=1193;RPL=0;RPP=7303.5;RPPR=2593.58;RPR=3362;RUN=1;SAF=0;SAP=7303.5;SAR=3362;SRF=0;SRP=2593.58;SRR=1193;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:9,6:9:311:6:205:-14.2682,0,-23.8083	1/1:42:0,42:0:0:42:1495:-134.845,-12.6433,0	1/1:56:0,56:0:0:56:2011:-181.263,-16.8577,0	1/1:105:0,105:0:0:105:3735:-336.347,-31.6082,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:55:25,30:25:883:30:1080:-80.9566,0,-63.2308	1/1:46:0,46:0:0:46:1637:-147.618,-13.8474,0	0/1:66:29,37:29:1036:37:1332:-100.314,0,-73.6859	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:36:1,35:1:36:35:1256:-109.747,-7.23881,0	1/1:96:0,96:0:0:96:3448:-310.532,-28.8989,0	0/1:79:34,45:34:1175:45:1616:-121.949,0,-82.2692	1/1:45:0,45:0:0:45:1602:-144.469,-13.5464,0	0/1:45:18,27:18:648:27:968:-73.891,0,-45.1055	0/1:52:23,29:23:806:29:1040:-78.2608,0,-57.2047	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:23:7,16:7:252:16:559:-43.7139,0,-16.1053	0/1:33:10,23:10:360:23:820:-64.1885,0,-22.8103	0/1:51:33,17:33:1156:17:608:-39.6408,0,-88.9326	0/1:69:44,25:44:1568:25:896:-60.1893,0,-120.641	0/1:38:22,16:22:784:16:576:-40.7358,0,-59.4448	0/1:49:27,22:27:949:22:788:-56.4934,0,-70.9723	1/1:9:0,9:0:0:9:305:-27.7771,-2.70927,0	0/1:39:20,19:20:716:19:684:-50.1502,0,-53.0275	0/1:122:41,81:41:1456:81:2884:-223.069,0,-94.6103	0/1:130:80,50:80:2860:50:1787:-121.978,0,-218.374	1/1:30:0,30:0:0:30:1069:-96.521,-9.0309,0	0/1:113:54,59:54:1931:59:2103:-155.522,0,-140.049	0/1:54:31,23:31:1104:23:819:-57.7759,0,-83.415	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:9:0,9:0:0:9:312:-28.4148,-2.70927,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:194:0,194:0:0:194:6940:-624.635,-58.3998,0	1/1:50:2,48:2:72:48:1689:-145.455,-8.21478,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:35:21,13:21:752:13:468:-31.8648,0,-57.4115	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:25:14,11:14:500:11:396:-28.457,0,-37.8104	0/1:36:23,13:23:828:13:468:-31.6226,0,-64.007	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:74:47,27:47:1666:27:964:-64.8006,0,-127.95	0/1:70:40,30:40:1427:30:1076:-76.0808,0,-107.655	0/1:63:37,26:37:1319:26:928:-64.8734,0,-100.046	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:67:40,27:40:1404:27:960:-66.5473,0,-106.485	0/1:30:18,12:18:627:12:432:-30.1903,0,-47.7235	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:58:0,58:0:0:58:2059:-185.58,-17.4597,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:115:63,52:63:2214:52:1872:-134.141,0,-164.904	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:107:0,107:0:0:107:3814:-343.453,-32.2102,0	0/1:87:33,54:33:1162:54:1944:-149.046,0,-78.6957	0/1:37:21,16:21:739:16:576:-41.0369,0,-55.6943	1/1:24:0,24:0:0:24:854:-77.1805,-7.22472,0	0/1:81:49,32:49:1743:32:1144:-78.8861,0,-132.77	0/1:57:39,18:39:1382:18:644:-41.1319,0,-107.519	1/1:25:0,25:0:0:25:881:-79.6067,-7.52575,0	1/1:25:0,25:0:0:25:873:-78.8845,-7.52575,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:17:8,9:8:280:9:324:-24.3883,0,-20.4218	1/1:47:3,44:3:108:44:1568:-131.336,-4.07324,0	0/1:70:33,37:33:1162:37:1330:-98.9303,0,-83.8132	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	1/1:55:0,55:0:0:55:1967:-177.305,-16.5567,0	0/1:58:33,25:33:1176:25:893:-63.2297,0,-88.688	0/1:54:32,22:32:1111:22:788:-54.9892,0,-84.0378	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:45:0,45:0:0:45:1603:-144.13,-13.5464,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:111:0,111:0:0:111:3957:-356.322,-33.4143,0	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:26:8,18:8:279:18:644:-50.4638,0,-17.6208	1/1:103:0,103:0:0:103:3663:-329.867,-31.0061,0	0/1:26:13,13:13:460:13:453:-33.2728,0,-33.9086	1/1:66:0,66:0:0:66:2299:-206.797,-19.868,0	1/1:62:0,62:0:0:62:2216:-199.699,-18.6639,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:77:35,41:35:1237:41:1476:-109.898,0,-88.3944	0/1:71:50,21:50:1772:21:752:-46.6331,0,-138.387	1/1:37:0,37:0:0:37:1303:-117.569,-11.1381,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0
chr04	3371385	.	C	A	23990.4	PASS	AB=0.425574;ABP=174.969;AC=47;AF=0.25;AN=188;AO=1525;CIGAR=1X;DP=7244;DPB=7244;DPRA=1.13302;EPP=3314.51;EPPR=12415.1;GTI=6;LEN=1;MEANALT=1;MQM=59.7003;MQMR=48.383;NS=94;NUMALT=1;ODDS=0.23765;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54529;QR=204434;RO=5716;RPL=0;RPP=3314.51;RPPR=12415.1;RPR=1525;RUN=1;SAF=0;SAP=3314.51;SAR=1525;SRF=0;SRP=12415.1;SRR=5716;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:13,28:13:468:28:991:-77.1596,0,-29.0983	0/0:112:111,1:111:3980:1:36:0,-30.8126,-347.124	0/0:146:145,0:145:5181:0:0:0,-43.6493,-455.385	0/0:211:211,0:211:7561:0:0:0,-63.5173,-677.535	0/0:56:55,0:55:1964:0:0:0,-16.5566,-171.6	0/0:48:48,0:48:1728:0:0:0,-14.4494,-152.201	0/1:105:44,61:44:1565:61:2177:-164.577,0,-108.564	0/0:140:139,1:139:4981:1:36:0,-39.2414,-434.779	0/1:108:72,36:72:2584:36:1292:-83.4446,0,-192.903	0/0:70:70,0:70:2520:0:0:0,-21.0721,-226.391	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.7299	0/0:61:61,0:61:2188:0:0:0,-18.3628,-191.875	0/1:70:33,37:33:1184:37:1328:-98.743,0,-83.6406	0/0:25:25,0:25:896:0:0:0,-7.52575,-79.3198	0/1:45:20,25:20:720:25:900:-67.7747,0,-50.9499	0/1:52:22,30:22:784:30:1072:-81.1374,0,-53.1544	0/0:10:10,0:10:345:0:0:0,-3.0103,-30.7479	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.4169	0/1:16:3,13:3:104:13:464:-37.281,0,-4.71177	0/1:132:76,56:76:2732:56:1996:-140.087,0,-205.08	0/1:134:69,65:69:2457:65:2327:-169.348,0,-175.665	0/1:82:49,33:49:1747:33:1188:-82.5395,0,-132.619	0/1:121:89,32:89:3179:32:1148:-67.1095,0,-248.867	0/1:86:77,9:77:2741:9:324:-3.61572,0,-214.541	0/1:69:59,10:59:2120:10:360:-11.9717,0,-166.252	0/1:233:142,91:142:5073:91:3248:-222.343,0,-385.222	0/1:183:92,91:92:3300:91:3246:-237.258,0,-234.197	0/0:20:20,0:20:720:0:0:0,-6.0206,-63.2328	0/1:215:108,107:108:3869:107:3844:-281.42,0,-282.401	0/1:102:61,41:61:2192:41:1468:-101.706,0,-160.034	0/0:102:102,0:102:3621:0:0:0,-30.7051,-325.268	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.42103	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.2198	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.0277	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.1571	0/1:15:7,8:7:252:8:279:-20.9321,0,-17.4789	0/0:130:130,0:130:4664:0:0:0,-39.1339,-418.468	0/0:153:153,0:153:5458:0:0:0,-46.0576,-480.135	0/0:26:26,0:26:932:0:0:0,-7.82678,-82.6128	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:134:78,56:78:2772:56:2000:-139.935,0,-204.126	0/0:13:13,0:13:464:0:0:0,-3.91339,-41.2264	0/1:106:76,30:76:2736:30:1072:-64.8786,0,-207.762	0/1:38:21,17:21:756:17:608:-43.6129,0,-56.8324	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.231	0/1:65:47,18:47:1688:18:648:-39.0849,0,-131.546	0/1:88:52,36:52:1868:36:1292:-89.9527,0,-137.911	0/1:133:93,40:93:3348:40:1436:-89.4983,0,-259.529	0/0:74:74,0:74:2664:0:0:0,-22.2762,-239.374	0/0:65:65,0:65:2305:0:0:0,-19.5669,-206.43	0/0:129:129,0:129:4625:0:0:0,-38.8329,-415.653	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.92394	0/1:94:63,31:63:2264:31:1103:-71.2812,0,-171.172	0/1:60:43,17:43:1536:17:604:-36.6242,0,-120.196	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.5479	0/0:158:158,0:158:5649:0:0:0,-47.5627,-496.571	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.124	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2947	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6646	0/0:51:51,0:51:1817:0:0:0,-15.3525,-160.431	0/1:54:21,33:21:756:33:1184:-90.6104,0,-51.8383	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1	0/0:183:183,0:183:6531:0:0:0,-55.0885,-585.861	0/1:150:85,65:85:3037:65:2336:-165.331,0,-227.471	0/1:37:14,23:14:500:23:815:-62.528,0,-33.2574	0/0:99:99,0:99:3522:0:0:0,-29.802,-316.047	0/1:154:106,48:106:3774:48:1715:-108.272,0,-291.047	0/1:151:55,96:55:1972:96:3409:-261.552,0,-131.671	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.0573	0/0:55:55,0:55:1972:0:0:0,-16.5566,-172.369	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.2057	0/1:21:12,9:12:417:9:324:-23.1819,0,-31.4196	0/0:90:90,0:90:3221:0:0:0,-27.0927,-283.16	0/1:102:63,39:63:2256:39:1404:-95.9524,0,-167.893	0/0:154:154,0:154:5532:0:0:0,-46.3586,-484.453	0/0:174:173,1:173:6184:1:36:0,-48.9916,-551.46	0/1:44:40,4:40:1427:4:144:-0.0682978,0,-112.834	0/1:101:47,54:47:1688:54:1932:-143.753,0,-118.009	0/1:21:7,14:7:252:14:504:-39.3765,0,-16.2128	0/0:103:103,0:103:3666:0:0:0,-31.0061,-321.879	0/0:86:85,0:85:3021:0:0:0,-25.5875,-264.384	0/0:224:224,0:224:7975:0:0:0,-67.4307,-714.817	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.022	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.42	0/1:31:14,17:14:500:17:604:-45.354,0,-35.8118	0/0:90:90,0:90:3228:0:0:0,-27.0927,-289.905	0/1:21:13,8:13:455:8:288:-19.9449,0,-34.1498	0/0:39:39,0:39:1391:0:0:0,-11.7402,-122.869	0/0:51:51,0:51:1828:0:0:0,-15.3525,-159.89	0/0:20:20,0:20:716:0:0:0,-6.0206,-62.8842	0/1:56:26,30:26:932:30:1068:-79.5744,0,-64.3882	0/1:48:11,37:11:396:37:1315:-104.202,0,-21.2298	0/0:164:164,0:164:5828:0:0:0,-49.3689,-522.932	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.451
chr04	3371390	.	A	G	116856	PASS	AB=0.574642;ABP=175.141;AC=141;AF=0.75;AN=188;AO=5709;CIGAR=1X;DP=7225;DPB=7225;DPRA=77.6774;EPP=12399.9;EPPR=3288.45;GTI=6;LEN=1;MEANALT=1.03226;MQM=48.3754;MQMR=59.7746;NS=94;NUMALT=1;ODDS=0.0723264;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202114;QR=53861;RO=1513;RPL=0;RPP=12399.9;RPPR=3288.45;RPR=5709;RUN=1;SAF=0;SAP=12399.9;SAR=5709;SRF=0;SRP=3288.45;SRR=1513;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:26,14:26:919:14:504:-32.6375,0,-70.985	1/1:113:0,112:0:0:112:3979:-349.071,-33.7154,0	1/1:146:0,146:0:0:146:5202:-457.166,-43.9504,0	1/1:214:0,214:0:0:214:7556:-677.632,-64.4204,0	1/1:58:0,58:0:0:58:2024:-175.886,-17.4597,0	1/1:48:0,48:0:0:48:1716:-151.235,-14.4494,0	0/1:105:61,44:61:2196:44:1571:-109.042,0,-166.288	1/1:138:0,138:0:0:138:4917:-431.791,-41.5421,0	0/1:104:33,71:33:1169:71:2494:-187.485,0,-74.2082	1/1:70:0,70:0:0:70:2499:-224.514,-21.0721,0	1/1:21:0,21:0:0:21:725:-65.354,-6.32163,0	1/1:62:0,62:0:0:62:2184:-191.733,-18.6639,0	0/1:71:38,33:38:1360:33:1171:-82.2687,0,-101.324	1/1:25:0,25:0:0:25:874:-77.4958,-7.52575,0	0/1:45:25,20:25:900:20:720:-50.9499,0,-67.7747	0/1:51:30,21:30:1068:21:722:-48.6995,0,-81.078	1/1:10:0,10:0:0:10:345:-30.7479,-3.0103,0	0/1:17:10,7:10:356:7:252:-17.4169,0,-27.2637	0/1:16:13,3:13:468:3:108:-5.04234,0,-37.6432	0/1:131:55,76:55:1968:76:2720:-204.346,0,-137.872	0/1:131:64,67:64:2277:67:2369:-169.781,0,-165.753	0/1:79:32,47:32:1148:47:1661:-125.799,0,-79.8439	0/1:120:32,88:32:1152:88:3105:-242.726,0,-67.7709	0/1:85:9,75:9:320:75:2659:-208.347,0,-3.50278	0/1:69:10,59:10:360:59:2073:-162.272,0,-11.9717	0/1:232:92,140:92:3292:140:4950:-374.274,0,-226.608	0/1:185:92,93:92:3260:93:3319:-235.336,0,-237.889	1/1:20:0,20:0:0:20:707:-62.1595,-6.0206,0	0/1:213:107,106:107:3784:106:3731:-270.789,0,-276.624	0/1:105:43,62:43:1521:62:2211:-160.874,0,-105.568	1/1:101:0,101:0:0:101:3592:-322.582,-30.404,0	0/1:5:2,3:2:72:3:108:-8.42103,0,-5.33157	0/1:24:12,12:12:432:12:428:-30.8981,0,-31.9965	1/1:4:0,4:0:0:4:140:-12.7001,-1.20412,0	1/1:16:0,16:0:0:16:564:-50.18,-4.81648,0	0/1:16:8,8:8:279:8:280:-19.7014,0,-20.6311	1/1:130:0,130:0:0:130:4573:-410.352,-39.1339,0	1/1:153:0,153:0:0:153:5447:-479.223,-46.0576,0	1/1:25:0,25:0:0:25:849:-75.3945,-7.52575,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:131:54,77:54:1931:77:2721:-200.681,0,-134.631	1/1:13:0,13:0:0:13:464:-41.2264,-3.91339,0	0/1:105:30,75:30:1047:75:2650:-201.195,0,-62.9252	0/1:38:17,21:17:612:21:743:-55.6653,0,-43.9743	1/1:32:0,32:0:0:32:1134:-102.163,-9.63296,0	0/1:67:18,49:18:644:49:1738:-135.39,0,-38.1216	0/1:89:37,52:37:1270:52:1820:-133.646,0,-87.7889	0/1:133:40,93:40:1427:93:3300:-255.473,0,-88.6874	1/1:74:0,74:0:0:74:2614:-234.948,-22.2762,0	1/1:63:0,63:0:0:63:2252:-201.164,-18.9649,0	1/1:129:0,129:0:0:129:4564:-410.2,-38.8329,0	0/1:3:1,2:1:36:2:68:-5.54783,0,-2.69518	0/1:95:28,67:28:1008:67:2379:-181.373,0,-62.4385	0/1:59:17,42:17:599:42:1489:-116.358,0,-36.4727	1/1:13:0,13:0:0:13:460:-40.9049,-3.91339,0	1/1:158:0,158:0:0:158:5600:-492.671,-47.5627,0	1/1:53:0,53:0:0:53:1870:-167.922,-15.9546,0	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	0/1:7:1,6:1:36:6:216:-17.6646,0,-1.49106	1/1:51:0,51:0:0:51:1807:-159.619,-15.3525,0	0/1:56:33,23:33:1175:23:805:-55.674,0,-89.1969	1/1:12:0,12:0:0:12:417:-37.8068,-3.61236,0	1/1:183:0,183:0:0:183:6499:-583.372,-55.0885,0	0/1:152:66,86:66:2349:86:3053:-228.487,0,-165.897	0/1:37:23,14:23:815:14:495:-32.8242,0,-62.528	1/1:100:0,100:0:0:100:3576:-320.942,-30.103,0	0/1:150:47,103:47:1692:103:3641:-280.674,0,-107.41	0/1:150:96,54:96:3408:54:1923:-127.613,0,-261.767	1/1:12:0,12:0:0:12:432:-38.379,-3.61236,0	1/1:55:0,55:0:0:55:1936:-169.614,-16.5567,0	1/1:25:0,25:0:0:25:881:-79.4978,-7.52575,0	0/1:21:9,12:9:324:12:432:-32.7129,0,-23.1819	1/1:92:0,92:0:0:92:3296:-289.816,-27.6948,0	0/1:103:39,64:39:1404:64:2284:-170.161,0,-95.6514	1/1:153:0,152:0:0:152:5397:-473.646,-45.7566,0	1/1:172:0,172:0:0:172:6078:-545.123,-51.7772,0	0/1:42:4,38:4:144:38:1360:-107.529,0,-0.670357	0/1:100:53,47:53:1880:47:1684:-118.005,0,-139.373	0/1:21:14,7:14:496:7:252:-16.2128,0,-38.6526	1/1:103:0,103:0:0:103:3651:-320.705,-31.0061,0	1/1:84:0,84:0:0:84:2965:-259.415,-25.2865,0	1/1:220:0,220:0:0:220:7759:-695.458,-66.2266,0	1/1:54:0,54:0:0:54:1893:-170.158,-16.2556,0	1/1:43:0,43:0:0:43:1514:-136.377,-12.9443,0	0/1:31:17,14:17:591:14:495:-35.4172,0,-44.1786	1/1:90:0,90:0:0:90:3175:-285.392,-27.0927,0	0/1:21:8,13:8:288:13:455:-34.1498,0,-19.9449	1/1:40:0,40:0:0:40:1415:-125.079,-12.0412,0	1/1:51:0,51:0:0:51:1771:-155.139,-15.3525,0	1/1:20:0,20:0:0:20:703:-61.811,-6.0206,0	0/1:56:30,26:30:1061:26:932:-64.4206,0,-78.9417	0/1:46:36,10:36:1287:10:347:-17.4239,0,-102.285	1/1:166:0,166:0:0:166:5861:-526.002,-49.971,0	1/1:48:0,48:0:0:48:1655:-149.007,-14.4494,0
chr04	3371414	.	C	T	120538	PASS	AB=0.577426;ABP=190.304;AC=142;AF=0.755319;AN=188;AO=5788;CIGAR=1X;DP=7312;DPB=7312;DPRA=78.6129;EPP=12571.5;EPPR=3303.65;GTI=3;LEN=1;MEANALT=1;MQM=48.348;MQMR=59.792;NS=94;NUMALT=1;ODDS=0.0104799;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207409;QR=54348;RO=1524;RPL=5788;RPP=12571.5;RPPR=3303.65;RPR=0;RUN=1;SAF=0;SAP=12571.5;SAR=5788;SRF=0;SRP=3312.33;SRR=1524;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:28,12:28:989:12:432:-26.3515,0,-77.2799	1/1:115:1,114:1:36:114:4080:-354.634,-31.0212,0	1/1:147:0,147:0:0:147:5280:-463.762,-44.2514,0	1/1:218:0,218:0:0:218:7777:-696.936,-65.6245,0	1/1:59:0,59:0:0:59:2120:-182.893,-17.7608,0	1/1:48:0,48:0:0:48:1723:-152.06,-14.4494,0	0/1:109:63,46:63:2253:46:1648:-114.818,0,-170.21	1/1:140:2,138:2:72:138:4964:-428.699,-35.3094,0	0/1:109:35,74:35:1256:74:2644:-197.585,0,-80.533	1/1:70:0,70:0:0:70:2508:-225.358,-21.0721,0	1/1:21:0,21:0:0:21:752:-67.7299,-6.32163,0	1/1:62:0,62:0:0:62:2224:-195.044,-18.6639,0	0/1:71:38,33:38:1360:33:1173:-82.3339,0,-101.32	1/1:26:0,26:0:0:26:921:-81.5919,-7.82678,0	0/1:47:26,21:26:921:21:756:-53.5818,0,-69.0568	0/1:52:30,22:30:1076:22:792:-53.7951,0,-81.4977	1/1:10:0,10:0:0:10:360:-32.1068,-3.0103,0	0/1:17:10,7:10:356:7:252:-17.4169,0,-27.2637	0/1:16:13,3:13:468:3:108:-5.04234,0,-37.6432	0/1:130:55,75:55:1956:75:2686:-201.747,0,-137.179	0/1:135:65,70:65:2312:70:2516:-180.163,0,-167.696	0/1:82:34,48:34:1224:48:1713:-129.554,0,-85.778	0/1:121:32,89:32:1137:89:3185:-249.399,0,-66.1166	0/1:86:9,77:9:305:77:2746:-215.151,0,-1.88707	0/1:70:10,60:10:356:60:2156:-169.185,0,-11.3076	0/1:239:94,145:94:3342:145:5185:-392.454,0,-228.995	0/1:184:90,94:90:3232:94:3380:-240.872,0,-235.631	1/1:20:0,20:0:0:20:720:-63.2328,-6.0206,0	0/1:213:107,106:107:3844:106:3757:-273.184,0,-282.022	0/1:103:42,61:42:1480:61:2184:-159.384,0,-102.481	1/1:102:0,102:0:0:102:3664:-329.004,-30.7051,0	0/1:5:2,3:2:72:3:108:-8.42103,0,-5.33157	0/1:24:12,12:12:423:12:428:-30.8602,0,-31.1803	1/1:4:0,4:0:0:4:144:-13.0277,-1.20412,0	1/1:16:0,16:0:0:16:568:-50.501,-4.81648,0	0/1:17:9,8:9:320:8:284:-19.7094,0,-24.0248	1/1:131:0,131:0:0:131:4712:-422.722,-39.4349,0	1/1:153:0,153:0:0:153:5489:-482.635,-46.0576,0	1/1:26:0,26:0:0:26:936:-82.9706,-7.82678,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:133:55,78:55:1965:78:2785:-205.496,0,-137.085	1/1:13:0,13:0:0:13:468:-41.5479,-3.91339,0	0/1:105:29,76:29:1044:76:2736:-208.063,0,-62.662	0/1:37:17,20:17:600:20:720:-53.8996,0,-43.1911	1/1:32:0,32:0:0:32:1152:-103.712,-9.63296,0	0/1:68:19,49:19:676:49:1760:-137.09,0,-40.698	0/1:87:34,53:34:1201:53:1896:-141.167,0,-82.2031	0/1:135:40,95:40:1402:95:3412:-264.743,0,-85.8211	1/1:75:0,75:0:0:75:2681:-240.905,-22.5773,0	1/1:65:0,65:0:0:65:2317:-206.999,-19.567,0	1/1:129:0,129:0:0:129:4632:-416.283,-38.8329,0	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:96:31,65:31:1112:65:2336:-176.934,0,-71.4916	0/1:60:17,43:17:604:43:1544:-120.811,0,-36.6242	1/1:13:0,13:0:0:13:464:-41.2264,-3.91339,0	1/1:162:0,162:0:0:162:5801:-509.922,-48.7669,0	1/1:53:0,53:0:0:53:1896:-170.045,-15.9546,0	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	0/1:8:2,6:2:72:6:216:-17.3636,0,-4.42848	1/1:52:0,52:0:0:52:1868:-164.884,-15.6536,0	0/1:57:33,24:33:1184:24:860:-60.3167,0,-89.7073	1/1:12:0,12:0:0:12:428:-38.7404,-3.61236,0	1/1:183:0,183:0:0:183:6553:-588.059,-55.0885,0	0/1:154:66,88:66:2356:88:3145:-235.888,0,-165.929	0/1:37:23,14:23:828:14:496:-32.9361,0,-63.7014	1/1:99:0,99:0:0:99:3560:-319.416,-29.802,0	0/1:156:48,108:48:1705:108:3869:-298.94,0,-106.769	0/1:151:96,55:96:3421:55:1980:-132.385,0,-262.633	1/1:13:0,13:0:0:13:453:-40.2556,-3.91339,0	1/1:55:0,55:0:0:55:1976:-172.751,-16.5567,0	1/1:26:0,26:0:0:26:932:-84.0817,-7.82678,0	0/1:21:9,12:9:324:12:432:-32.7129,0,-23.1819	1/1:91:0,91:0:0:91:3261:-287.391,-27.3937,0	0/1:104:39,65:39:1400:65:2336:-174.331,0,-94.9903	1/1:160:0,160:0:0:160:5718:-500.971,-48.1648,0	1/1:175:0,175:0:0:175:6292:-564.312,-52.6803,0	0/1:44:4,40:4:144:40:1440:-113.904,0,-0.0682972	0/1:101:53,48:53:1889:48:1713:-120.227,0,-139.882	0/1:21:14,7:14:496:7:252:-16.2128,0,-38.6526	1/1:104:0,104:0:0:104:3724:-326.975,-31.3071,0	1/1:84:0,84:0:0:84:3005:-262.425,-25.2865,0	1/1:226:0,226:0:0:226:8093:-725.139,-68.0328,0	1/1:56:0,56:0:0:56:2016:-181.138,-16.8577,0	1/1:44:0,44:0:0:44:1576:-141.939,-13.2453,0	0/1:31:16,15:16:576:15:540:-39.4103,0,-42.8384	1/1:90:0,90:0:0:90:3236:-290.619,-27.0927,0	0/1:21:8,13:8:288:13:468:-35.2263,0,-19.9449	1/1:41:0,41:0:0:41:1476:-130.277,-12.3422,0	1/1:49:0,49:0:0:49:1745:-152.956,-14.7505,0	1/1:20:0,20:0:0:20:716:-62.8842,-6.0206,0	0/1:54:28,26:28:1000:26:932:-64.9902,0,-74.0598	0/1:46:35,11:35:1235:11:396:-21.8319,0,-97.6061	1/1:169:0,169:0:0:169:6064:-544.099,-50.8741,0	1/1:49:0,49:0:0:49:1751:-157.526,-14.7505,0
chr04	3371429	.	A	C	118382	PASS	AB=0.576424;ABP=182.903;AC=141;AF=0.75;AN=188;AO=5696;CIGAR=1X;DP=7199;DPB=7199;DPRA=77.3978;EPP=12371.7;EPPR=3258.05;GTI=5;LEN=1;MEANALT=1.04301;MQM=48.3392;MQMR=59.8012;NS=94;NUMALT=1;ODDS=0.170665;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203751;QR=53682;RO=1499;RPL=5696;RPP=12371.7;RPPR=3258.05;RPR=0;RUN=1;SAF=0;SAP=12371.7;SAR=5696;SRF=0;SRP=3258.05;SRR=1499;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:28,12:28:1004:12:417:-24.7018,0,-78.2814	1/1:114:0,114:0:0:114:4096:-359.607,-34.3174,0	1/1:142:0,142:0:0:142:5053:-443.862,-42.7463,0	1/1:211:0,211:0:0:211:7549:-676.611,-63.5173,0	1/1:56:0,56:0:0:56:2000:-173.818,-16.8577,0	1/1:47:0,47:0:0:47:1692:-149.032,-14.1484,0	0/1:107:62,45:62:2212:45:1578:-109.072,0,-167.128	1/1:139:0,139:0:0:139:4956:-435.263,-41.8432,0	0/1:104:32,72:32:1144:72:2561:-192.707,0,-71.9624	1/1:69:0,69:0:0:69:2476:-222.546,-20.7711,0	1/1:21:0,21:0:0:21:748:-67.3717,-6.32163,0	1/1:60:0,60:0:0:60:2154:-188.892,-18.0618,0	0/1:68:36,32:36:1288:32:1152:-81.3523,0,-95.7526	1/1:26:0,26:0:0:26:928:-82.198,-7.82678,0	0/1:47:26,21:26:932:21:756:-53.5818,0,-70.0505	0/1:51:29,22:29:1044:22:792:-54.0961,0,-78.9207	1/1:10:0,10:0:0:10:360:-32.1068,-3.0103,0	0/1:17:10,7:10:360:7:252:-17.4169,0,-27.6268	0/1:16:13,3:13:468:3:108:-5.04234,0,-37.6432	0/1:131:56,75:56:1996:75:2681:-200.797,0,-140.474	0/1:133:64,69:64:2296:69:2457:-175.674,0,-166.861	0/1:80:32,48:32:1148:48:1728:-131.508,0,-79.5428	0/1:120:30,90:30:1076:90:3232:-253.922,0,-60.9335	0/1:83:9,74:9:308:74:2634:-206.66,0,-3.06575	0/1:69:10,59:10:356:59:2105:-164.968,0,-11.6086	0/1:234:91,143:91:3256:143:5113:-388.239,0,-222.792	0/1:182:90,92:90:3217:92:3308:-235.069,0,-234.882	1/1:20:0,20:0:0:20:719:-63.1901,-6.0206,0	0/1:210:103,106:103:3704:106:3786:-276.395,0,-270.279	0/1:103:42,61:42:1500:61:2177:-158.386,0,-104.284	1/1:101:0,101:0:0:101:3617:-324.83,-30.404,0	0/1:5:2,3:2:68:3:108:-8.42103,0,-4.95256	0/1:23:12,11:12:432:11:392:-28.03,0,-32.2975	1/1:4:0,4:0:0:4:140:-12.7001,-1.20412,0	1/1:16:0,16:0:0:16:568:-50.4782,-4.81648,0	0/1:17:9,8:9:324:8:288:-20.0468,0,-24.3883	1/1:129:0,129:0:0:129:4609:-413.46,-38.8329,0	1/1:154:0,154:0:0:154:5509:-484.552,-46.3586,0	1/1:22:0,22:0:0:22:788:-69.7889,-6.62266,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:132:55,77:55:1957:77:2764:-203.877,0,-136.668	1/1:13:0,13:0:0:13:468:-41.5479,-3.91339,0	0/1:103:29,74:29:1040:74:2642:-200.773,0,-62.9036	0/1:38:17,21:17:612:21:756:-56.8324,0,-43.9743	1/1:33:0,33:0:0:33:1188:-106.946,-9.93399,0	0/1:65:19,46:19:676:46:1636:-126.831,0,-41.601	0/1:87:36,51:36:1292:51:1832:-135.259,0,-90.3235	0/1:132:40,91:40:1440:91:3260:-251.92,0,-90.1018	1/1:75:0,75:0:0:75:2700:-242.608,-22.5773,0	1/1:60:0,60:0:0:60:2133:-191.128,-18.0618,0	1/1:128:0,128:0:0:128:4596:-413.038,-38.5318,0	0/1:3:1,2:1:36:2:72:-5.92394,0,-2.69518	0/1:97:32,65:32:1152:65:2332:-176.351,0,-74.7884	0/1:57:16,41:16:572:41:1461:-114.255,0,-34.6501	1/1:13:0,13:0:0:13:468:-41.5479,-3.91339,0	1/1:161:0,161:0:0:161:5742:-505.352,-48.4658,0	1/1:49:0,49:0:0:49:1741:-156.161,-14.7505,0	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	0/1:5:1,4:1:36:4:144:-11.7896,0,-2.09312	1/1:51:0,51:0:0:51:1828:-161.396,-15.3525,0	0/1:54:32,21:32:1148:21:756:-51.8408,0,-87.3136	1/1:12:0,12:0:0:12:432:-39.1,-3.61236,0	1/1:179:0,179:0:0:179:6420:-576.155,-53.8844,0	0/1:152:65,87:65:2332:87:3108:-233.163,0,-164.371	0/1:37:23,14:23:816:14:500:-33.2574,0,-62.6199	1/1:99:0,99:0:0:99:3548:-318.383,-29.802,0	0/1:154:46,108:46:1648:108:3876:-300.174,0,-102.245	0/1:149:94,55:94:3364:55:1972:-132.311,0,-258.109	1/1:13:0,13:0:0:13:464:-41.2264,-3.91339,0	1/1:55:0,55:0:0:55:1972:-172.432,-16.5567,0	1/1:26:0,26:0:0:26:932:-84.0817,-7.82678,0	0/1:20:8,12:8:288:12:428:-32.6543,0,-20.2444	1/1:91:0,91:0:0:91:3242:-285.818,-27.3937,0	0/1:102:38,64:38:1364:64:2300:-171.725,0,-92.3538	1/1:154:0,154:0:0:154:5464:-479.757,-46.3586,0	1/1:174:0,174:0:0:174:6252:-560.722,-52.3792,0	0/1:43:4,39:4:144:39:1400:-110.676,0,-0.369327	0/1:101:53,48:53:1904:48:1728:-121.512,0,-141.234	0/1:21:14,7:14:496:7:252:-16.2128,0,-38.6526	1/1:104:0,104:0:0:104:3701:-325.046,-31.3071,0	1/1:86:0,86:0:0:86:3088:-269.751,-25.8886,0	1/1:221:0,221:0:0:221:7898:-707.963,-66.5276,0	1/1:56:0,56:0:0:56:1995:-179.263,-16.8577,0	1/1:43:0,43:0:0:43:1540:-138.701,-12.9443,0	0/1:32:17,15:17:612:15:540:-39.1092,0,-45.7758	1/1:88:0,88:0:0:88:3137:-281.73,-26.4906,0	0/1:21:8,13:8:288:13:468:-35.2263,0,-19.9449	1/1:40:0,40:0:0:40:1440:-127.108,-12.0412,0	1/1:49:0,49:0:0:49:1756:-153.685,-14.7505,0	1/1:19:0,19:0:0:19:680:-59.681,-5.71957,0	0/1:55:29,26:29:1044:26:932:-64.6892,0,-77.7182	0/1:45:35,10:35:1252:10:356:-18.5385,0,-99.4387	1/1:167:0,167:0:0:167:5956:-534.544,-50.272,0	1/1:48:0,48:0:0:48:1724:-154.978,-14.4494,0
chr04	3377241	.	T	C	134754	PASS	AB=0.495117;ABP=3.77379;AC=143;AF=0.760638;AN=188;AO=6364;CIGAR=1X;DP=8246;DPB=8246;DPRA=22.3859;EPP=13822.3;EPPR=4083.21;GTI=1;LEN=1;MEANALT=1.03261;MQM=59.9544;MQMR=59.9803;NS=94;NUMALT=1;ODDS=1.81161;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226876;QR=67216;RO=1879;RPL=0;RPP=13822.3;RPPR=4083.21;RPR=6364;RUN=1;SAF=6364;SAP=13822.3;SAR=0;SRF=1879;SRP=4083.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:7,26:7:252:26:932:-74.2649,0,-13.095	1/1:182:0,182:0:0:182:6468:-582.212,-54.7875,0	1/1:154:0,154:0:0:154:5491:-494.311,-46.3586,0	1/1:152:1,151:1:36:151:5375:-480.285,-42.1583,0	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	1/1:63:0,63:0:0:63:2252:-202.935,-18.9649,0	0/1:88:41,47:41:1468:47:1673:-124.367,0,-105.925	1/1:193:0,193:0:0:193:6884:-619.624,-58.0988,0	0/1:77:31,46:31:1108:46:1624:-123.27,0,-76.8517	1/1:97:0,96:0:0:96:3407:-306.486,-28.8989,0	1/1:74:0,74:0:0:74:2648:-238.565,-22.2762,0	1/1:77:0,77:0:0:77:2740:-246.844,-23.1793,0	0/1:69:37,32:37:1332:32:1123:-80.6061,0,-99.4113	1/1:108:0,108:0:0:108:3856:-347.237,-32.5112,0	0/1:81:36,45:36:1296:45:1608:-120.627,0,-92.5605	0/1:69:45,24:45:1612:24:860:-56.938,0,-124.594	1/1:81:0,81:0:0:81:2888:-260.157,-24.3834,0	0/1:83:45,38:45:1608:38:1360:-97.7151,0,-120.025	0/1:55:30,25:30:1064:25:892:-64.043,0,-79.515	0/1:38:18,20:18:644:20:716:-53.3286,0,-46.8515	0/1:140:77,63:77:2760:63:2234:-159.179,0,-206.497	0/1:12:8,4:8:276:4:144:-9.70126,0,-21.5629	0/1:89:46,43:46:1652:43:1536:-111.741,0,-122.172	1/1:142:5,137:5:180:137:4881:-422.892,-26.1942,0	0/1:64:25,39:25:885:39:1392:-106.313,0,-60.7006	0/1:250:127,122:127:4532:122:4357:-316.984,0,-332.733	0/1:118:58,60:58:2072:60:2144:-157.706,0,-151.225	1/1:44:0,44:0:0:44:1571:-141.681,-13.2453,0	0/1:86:36,50:36:1292:50:1792:-135.674,0,-90.6952	0/1:121:52,69:52:1868:69:2464:-185.59,0,-131.975	1/1:105:0,105:0:0:105:3743:-337.067,-31.6082,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:187:0,187:0:0:187:6695:-602.624,-56.2926,0	1/1:136:0,136:0:0:136:4833:-435.123,-40.9401,0	1/1:71:0,71:0:0:71:2527:-227.68,-21.3731,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:123:52,71:52:1860:71:2536:-191.465,0,-130.653	1/1:35:0,35:0:0:35:1252:-112.982,-10.5361,0	0/1:156:72,84:72:2572:84:3000:-223.271,0,-184.766	0/1:107:56,51:56:2004:51:1820:-131.866,0,-148.423	1/1:58:0,58:0:0:58:2080:-187.466,-17.4597,0	0/1:92:52,40:52:1856:40:1432:-101.353,0,-139.625	0/1:128:61,67:61:2180:67:2392:-177.002,0,-157.934	0/1:118:61,57:61:2180:57:2020:-146.552,0,-160.945	1/1:63:0,63:0:0:63:2241:-201.953,-18.9649,0	1/1:148:1,147:1:36:147:5236:-467.782,-40.9542,0	1/1:94:0,94:0:0:94:3348:-301.538,-28.2968,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:117:60,57:60:2145:57:2040:-148.652,0,-158.095	0/1:28:16,12:16:564:12:432:-30.7924,0,-42.6615	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:135:0,135:0:0:135:4810:-433.058,-40.6391,0	1/1:50:0,50:0:0:50:1764:-159.043,-15.0515,0	1/1:7:0,7:0:0:7:239:-21.8419,-2.10721,0	0/1:10:2,8:2:68:8:273:-21.8914,0,-3.44741	1/1:108:0,108:0:0:108:3864:-347.636,-32.5112,0	0/1:120:59,61:59:2120:61:2181:-160.426,0,-154.944	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:119:0,119:0:0:119:4260:-383.579,-35.8226,0	0/1:185:97,88:97:3461:88:3148:-227.85,0,-256.011	0/1:96:39,57:39:1396:57:2027:-153.746,0,-97.0384	1/1:54:0,54:0:0:54:1937:-174.606,-16.2556,0	0/1:112:63,49:63:2252:49:1744:-123.527,0,-169.228	0/1:83:59,24:59:2097:24:860:-52.7363,0,-164.012	1/1:56:0,56:0:0:56:1987:-179.104,-16.8577,0	1/1:83:0,83:0:0:83:2968:-267.353,-24.9855,0	1/1:119:0,119:0:0:119:4234:-381.241,-35.8226,0	0/1:33:23,10:23:828:10:356:-22.4473,0,-64.9101	1/1:87:2,85:2:72:85:3018:-265.016,-19.3529,0	0/1:80:27,53:27:964:53:1875:-144.945,0,-62.9898	1/1:204:0,204:0:0:204:7283:-655.505,-61.4101,0	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	0/1:138:66,72:66:2368:72:2584:-191.211,0,-171.836	0/1:137:80,57:80:2860:57:2024:-141.192,0,-216.397	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:99:0,99:0:0:99:3526:-317.124,-29.802,0	1/1:67:0,67:0:0:67:2388:-215.178,-20.169,0	1/1:171:0,171:0:0:171:6082:-547.486,-51.4761,0	1/1:105:0,105:0:0:105:3732:-336.08,-31.6082,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	0/1:98:43,55:43:1540:55:1950:-146.274,0,-109.392	1/1:162:3,159:3:108:159:5667:-500.075,-38.6917,0	0/1:44:27,17:27:972:17:604:-41.4453,0,-74.5526	1/1:76:0,76:0:0:76:2714:-244.504,-22.8783,0	1/1:74:0,74:0:0:74:2627:-236.678,-22.2762,0	1/1:70:0,70:0:0:70:2495:-224.795,-21.0721,0	0/1:123:71,51:71:2548:51:1824:-127.356,0,-192.485	0/1:75:49,26:49:1760:26:916:-60.1792,0,-136.107	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:100:0,100:0:0:100:3548:-319.529,-30.103,0
chr04	3377255	.	AGAAT	TGAAT,TGAAG	179551	PASS	AB=0.489458,0.505738;ABP=6.6271,4.08184;AC=143,45;AF=0.760638,0.239362;AN=188;AO=6346,1915;CIGAR=1X4M,1X3M1X;DP=8304;DPB=8304.2;DPRA=22.5435,1.10279;EPP=13670.5,4118.06;EPPR=16.9077;GTI=1;LEN=1,5;MEANALT=1.80435,2.29167;MQM=59.965,59.9775;MQMR=60;NS=94;NUMALT=2;ODDS=0.708541;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=227297,67647;QR=294;RO=10;RPL=13,5;RPP=13670.5,4118.06;RPPR=16.9077;RPR=6333,1910;RUN=1,1;SAF=6346,1915;SAP=13783.2,4161.38;SAR=0,0;SRF=10;SRP=24.725;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:36:0,27,9:0:0:27,9:968,312:-104.666,-25.706,-17.5782,-79.3096,0,-76.6003	1/1:184:0,182,0:0:0:182,0:6529,0:-587.359,-54.7875,0,-587.359,-54.7875,-587.359	1/1:156:0,156,0:0:0:156,0:5551,0:-499.704,-46.9607,0,-499.704,-46.9607,-499.704	1/1:149:1,146,1:1:31:146,1:5244,33:-468.971,-41.4735,0,-466.604,-41.2838,-468.791	1/1:67:0,67,0:0:0:67,0:2395,0:-215.806,-20.169,0,-215.806,-20.169,-215.806	1/1:61:0,60,0:0:0:60,0:2129,0:-191.557,-18.0618,0,-191.557,-18.0618,-191.557	1/2:92:0,48,43:0:0:48,43:1728,1514:-264.248,-123.248,-108.798,-140.996,0,-128.052	1/1:191:0,191,0:0:0:191,0:6844,0:-616.021,-57.4967,0,-616.021,-57.4967,-616.021	1/2:78:0,46,32:0:0:46,32:1652,1131:-227.231,-92.4651,-78.6177,-135.121,0,-125.488	1/1:98:0,98,0:0:0:98,0:3509,0:-316.018,-29.5009,0,-316.018,-29.5009,-316.018	1/1:76:0,76,0:0:0:76,0:2727,0:-245.67,-22.8783,0,-245.67,-22.8783,-245.67	1/1:79:2,77,0:2:62:77,0:2768,0:-243.472,-17.8924,0,-244.074,-23.1793,-249.049	1/2:70:0,32,38:0:0:32,38:1152,1344:-203.784,-109.819,-100.186,-94.3214,0,-82.8822	1/1:109:0,108,0:0:0:108,0:3880,0:-349.032,-32.5112,0,-349.032,-32.5112,-349.032	1/2:81:0,45,36:0:0:45,36:1616,1279:-236.403,-104.576,-91.03,-132.184,0,-121.347	1/2:70:0,23,46:0:0:23,46:828,1627:-200.058,-132.508,-125.584,-67.5478,0,-53.7004	1/1:82:0,82,0:0:0:82,0:2937,0:-264.563,-24.6845,0,-264.563,-24.6845,-264.563	1/2:85:0,38,47:0:0:38,47:1364,1664:-247.163,-135.898,-124.459,-111.622,0,-97.4732	1/2:57:0,26,31:0:0:26,31:936,1101:-166.443,-90.068,-82.2412,-76.7327,0,-67.4008	1/2:41:0,22,19:0:0:22,19:784,668:-118.633,-54.7257,-48.103,-64.2613,0,-58.5417	1/2:146:0,64,80:0:0:64,80:2300,2793:-414.809,-227.169,-207.903,-187.635,0,-163.553	1/2:12:0,4,8:0:0:4,8:140,283:-34.7937,-23.4043,-22.2002,-11.7405,0,-9.33222	1/2:88:0,42,46:0:0:42,46:1504,1620:-254.895,-132.239,-119.595,-123.011,0,-109.164	1/1:143:0,138,5:0:0:138,5:4933,180:-443.759,-41.5421,0,-429.072,-26.4952,-427.567	1/2:64:0,39,25:0:0:39,25:1384,881:-184.845,-72.0817,-60.3415,-113.117,0,-105.591	1/2:257:1,127,128:1:36:127,128:4557,4533:-737.719,-366.314,-331.02,-368.766,0,-333.171	1/2:117:0,59,56:0:0:59,56:2116,1947:-330.89,-158.295,-140.534,-172.598,0,-155.74	1/1:44:0,44,0:0:0:44,0:1565,0:-141.14,-13.2453,0,-141.14,-13.2453,-141.14	1/2:88:0,50,38:0:0:50,38:1796,1344:-256.335,-109.82,-94.7685,-146.871,0,-135.432	1/2:121:0,68,53:0:0:68,53:2444,1869:-351.923,-152.534,-132.064,-199.745,0,-183.79	1/1:105:0,105,0:0:0:105,0:3735,0:-336.348,-31.6082,0,-336.348,-31.6082,-336.348	1/2:3:0,1,1:0:0:1,1:36,36:-5.87483,-2.93742,-2.63639,-2.93742,0,-2.63639	1/2:7:0,4,3:0:0:4,3:144,105:-20.6482,-8.89288,-7.68876,-12.1095,0,-11.2064	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:188:0,188,0:0:0:188,0:6726,0:-605.413,-56.5936,0,-605.413,-56.5936,-605.413	1/1:131:1,130,0:1:27:130,0:4641,0:-415.148,-36.7351,0,-415.449,-39.1339,-417.577	1/1:71:0,71,0:0:0:71,0:2551,0:-229.761,-21.3731,0,-229.761,-21.3731,-229.761	2/2:1:0,0,1:0:0:0,1:0,30:-2.99957,-2.99957,-2.99957,-0.30103,-0.30103,0	1/2:128:0,74,54:0:0:74,54:2633,1925:-371.855,-157.271,-134.995,-214.94,0,-198.684	1/1:37:0,37,0:0:0:37,0:1332,0:-120.179,-11.1381,0,-120.179,-11.1381,-120.179	1/2:156:0,82,73:0:0:82,73:2948,2585:-451.168,-210.655,-185.971,-240.597,0,-218.622	1/2:107:0,51,56:0:0:51,56:1835,1968:-310.255,-160.536,-145.184,-150.075,0,-133.217	1/1:56:2,54,0:2:53:54,0:1940,0:-169.837,-11.8233,0,-170.439,-16.2556,-174.603	1/2:92:0,38,53:0:0:38,53:1368,1893:-266.096,-154.472,-143.033,-111.759,0,-95.8042	1/2:134:0,69,65:0:0:69,65:2457,2277:-385.767,-185.624,-164.853,-200.496,0,-180.929	1/2:120:0,58,62:0:0:58,62:2069,2194:-347.727,-179.063,-161.603,-169.019,0,-150.355	1/1:61:1,60,0:1:27:60,0:2151,0:-191.112,-15.978,0,-191.414,-18.0618,-193.541	1/1:148:0,147,1:0:0:147,1:5261,36:-473.265,-44.2514,0,-470.327,-40.9542,-470.026	1/1:93:0,93,0:0:0:93,0:3328,0:-299.737,-27.9958,0,-299.737,-27.9958,-299.737	2/2:7:0,0,7:0:0:0,7:0,252:-23.029,-23.029,-23.029,-2.10721,-2.10721,0	1/2:120:0,57,62:0:0:57,62:2052,2202:-346.966,-179.53,-162.371,-167.541,0,-148.877	1/2:28:0,12,16:0:0:12,16:432,572:-82.2474,-46.9973,-43.3849,-35.6088,0,-30.7924	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:130:1,129,0:1:31:129,0:4604,0:-411.423,-36.0344,0,-411.724,-38.8329,-414.212	1/1:52:0,52,0:0:0: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chr04	3474327	.	T	C	110667	PASS	AB=0.581754;ABP=168.466;AC=142;AF=0.763441;AN=186;AO=5943;CIGAR=1X;DP=7141;DPB=7141;DPRA=0;EPP=576.665;EPPR=2490.57;GTI=3;LEN=1;MEANALT=1.01075;MQM=26.7972;MQMR=59.5505;NS=93;NUMALT=1;ODDS=3.82157;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212103;QR=42566;RO=1197;RPL=5917;RPP=12683.2;RPPR=2431.45;RPR=26;RUN=1;SAF=2319;SAP=625.267;SAR=3624;SRF=7;SRP=2541.82;SRR=1190;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:21,33:21:748:33:1169:-67.0886,0,-51.3897	1/1:37:0,37:0:0:37:1324:-94.2134,-11.1381,0	1/1:87:0,87:0:0:87:3117:-221.998,-26.1896,0	1/1:170:0,170:0:0:170:6048:-369.206,-51.1751,0	1/1:26:0,26:0:0:26:936:-74.7232,-7.82678,0	1/1:7:0,7:0:0:7:252:-18.0549,-2.10721,0	0/1:105:36,69:36:1284:69:2433:-118.533,0,-83.2339	1/1:97:4,93:4:144:93:3332:-224.855,-15.8863,0	0/1:78:35,43:35:1244:43:1544:-87.1142,0,-88.7843	1/1:126:0,126:0:0:126:4508:-270.553,-37.9298,0	1/1:95:0,95:0:0:95:3377:-201.402,-28.5979,0	1/1:87:0,87:0:0:87:3124:-221.474,-26.1896,0	0/1:66:36,30:36:1284:30:1080:-57.9808,0,-95.9496	1/1:46:1,45:1:36:45:1616:-127.117,-10.2491,0	0/1:114:40,74:40:1436:74:2656:-129.533,0,-94.1925	0/1:67:36,31:36:1296:31:1112:-70.1385,0,-96.531	1/1:37:0,37:0:0:37:1324:-93.6871,-11.1381,0	0/1:44:22,22:22:780:22:792:-42.8739,0,-57.2777	0/1:38:15,23:15:540:23:828:-48.0082,0,-37.4974	0/1:61:14,47:14:504:47:1688:-84.3948,0,-27.3353	0/1:97:52,45:52:1833:45:1586:-99.7593,0,-136.049	0/1:25:10,15:10:360:15:528:-26.0815,0,-25.2186	0/1:64:28,36:28:992:36:1284:-58.3046,0,-70.3218	1/1:35:0,35:0:0:35:1256:-102.692,-10.5361,0	0/1:40:21,19:21:748:19:680:-43.5913,0,-55.6041	0/1:172:48,124:48:1705:124:4373:-223.874,0,-101.953	0/1:127:63,63:63:2237:63:2245:-144.702,0,-163.334	1/1:25:0,25:0:0:25:900:-72.2104,-7.52575,0	0/1:130:41,89:41:1430:89:3152:-156.816,0,-89.8565	0/1:47:33,14:33:1176:14:504:-26.6922,0,-91.9927	1/1:95:0,95:0:0:95:3377:-206.014,-28.5979,0	0/1:7:4,3:4:144:3:108:-6.51374,0,-11.2064	0/1:11:2,9:2:72:9:324:-23.3072,0,-3.52539	1/1:2:0,2:0:0:2:72:-4.93488,-0.60206,0	1/1:9:0,9:0:0:9:324:-23.5202,-2.70927,0	0/1:13:9,4:9:320:4:144:-6.52461,0,-25.2256	1/1:429:0,429:0:0:429:15227:-960.593,-129.142,0	1/1:27:0,27:0:0:27:972:-79.2063,-8.12781,0	1/1:55:0,55:0:0:55:1968:-140.296,-16.5567,0	.:.:.:.:.:.:.:.	0/1:45:20,25:20:716:25:896:-59.5049,0,-51.2098	1/1:38:0,38:0:0:38:1368:-110.082,-11.4391,0	0/1:64:42,22:42:1489:22:792:-45.1231,0,-115.037	0/1:100:28,72:28:1000:72:2556:-121.583,0,-59.1834	1/1:115:0,115:0:0:115:4088:-245.803,-34.6185,0	0/1:60:21,39:21:756:39:1388:-72.6603,0,-50.3054	0/1:50:23,27:23:820:27:972:-53.7829,0,-59.0677	0/1:87:27,60:27:956:60:2136:-106.707,0,-58.0566	1/1:92:0,92:0:0:92:3276:-198.062,-27.6948,0	1/1:123:0,123:0:0:123:4416:-266.131,-37.0267,0	1/1:86:0,86:0:0:86:3052:-194.73,-25.8886,0	0/1:5:1,4:1:36:4:144:-7.00305,0,-2.09312	0/1:50:29,21:29:1040:21:752:-38.8456,0,-78.8615	0/1:37:13,24:13:464:24:855:-39.605,0,-30.9581	1/1:10:0,10:0:0:10:356:-25.8401,-3.0103,0	1/1:71:0,71:0:0:71:2552:-205.561,-21.3731,0	1/1:61:0,61:0:0:61:2188:-136.837,-18.3628,0	1/1:8:0,8:0:0:8:288:-20.5939,-2.40824,0	0/1:13:5,8:5:180:8:288:-15.3221,0,-12.6387	1/1:49:0,49:0:0:49:1756:-142.041,-14.7505,0	0/1:112:35,77:35:1252:77:2752:-132.747,0,-79.2617	1/1:8:0,8:0:0:8:288:-19.4553,-2.40824,0	1/1:153:0,153:0:0:153:5446:-338.694,-46.0576,0	0/1:113:40,73:40:1417:73:2616:-126.26,0,-93.8086	0/1:33:12,21:12:428:21:756:-51.743,0,-28.9248	1/1:52:0,52:0:0:52:1836:-111.008,-15.6536,0	0/1:148:52,96:52:1837:96:3429:-162.229,0,-121.056	0/1:104:72,32:72:2542:32:1136:-43.7386,0,-197.701	1/1:21:0,21:0:0:21:756:-61.2555,-6.32163,0	1/1:40:0,40:0:0:40:1410:-100.348,-12.0412,0	1/1:152:0,152:0:0:152:5368:-325.512,-45.7566,0	0/1:16:2,14:2:72:14:504:-24.5984,0,-2.02024	1/1:38:0,38:0:0:38:1368:-98.3737,-11.4391,0	0/1:62:39,23:39:1370:23:824:-40.5822,0,-104.929	1/1:92:1,91:1:36:91:3264:-261.955,-24.0965,0	1/1:126:0,126:0:0:126:4512:-273.696,-37.9298,0	0/1:47:23,24:23:809:24:860:-48.0647,0,-58.9799	0/1:52:27,25:27:964:25:888:-47.9565,0,-71.4062	0/1:8:5,3:5:161:3:108:-5.49079,0,-12.3982	1/1:46:0,46:0:0:46:1640:-132.808,-13.8474,0	1/1:43:0,43:0:0:43:1529:-106.875,-12.9443,0	1/1:190:0,190:0:0:190:6785:-406.768,-57.1957,0	1/1:167:0,167:0:0:167:5953:-349.392,-50.272,0	1/1:156:0,156:0:0:156:5584:-338.971,-46.9607,0	0/1:113:19,94:19:684:94:3364:-163.955,0,-27.4988	1/1:293:0,293:0:0:293:10466:-637.679,-88.2018,0	0/1:15:7,8:7:252:8:288:-16.4663,0,-18.5135	1/1:65:0,65:0:0:65:2340:-166.41,-19.567,0	1/1:64:0,64:0:0:64:2300:-163.056,-19.2659,0	1/1:30:0,30:0:0:30:1076:-86.8512,-9.0309,0	0/1:70:36,34:36:1296:34:1220:-76.5465,0,-95.554	0/1:86:47,39:47:1676:39:1389:-58.057,0,-124.53	1/1:143:0,143:0:0:143:5113:-306.009,-43.0473,0	1/1:267:0,267:0:0:267:9532:-584.336,-80.375,0
chr04	3475172	.	G	A	140096	PASS	AB=0.506079;ABP=4.27754;AC=140;AF=0.76087;AN=184;AO=6582;CIGAR=1X;DP=8537;DPB=8537;DPRA=0;EPP=14295.6;EPPR=4248.24;GTI=2;LEN=1;MEANALT=1;MQM=59.9514;MQMR=59.9852;NS=92;NUMALT=1;ODDS=1.28398;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235523;QR=69852;RO=1955;RPL=0;RPP=14295.6;RPPR=4248.24;RPR=6582;RUN=1;SAF=6582;SAP=14295.6;SAR=0;SRF=1955;SRP=4248.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:123:1,122:1:36:122:4353:-388.336,-33.4284,0	1/1:108:0,108:0:0:108:3876:-348.998,-32.5112,0	1/1:157:0,157:0:0:157:5594:-503.583,-47.2617,0	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:104:51,53:51:1816:53:1894:-139.43,0,-132.414	1/1:145:0,145:0:0:145:5181:-466.429,-43.6494,0	0/1:83:41,42:41:1464:42:1508:-111.029,0,-107.071	1/1:86:0,86:0:0:86:3067:-276.173,-25.8886,0	1/1:53:0,53:0:0:53:1906:-171.815,-15.9546,0	1/1:87:0,87:0:0:87:3118:-280.846,-26.1896,0	0/1:90:35,55:35:1245:55:1953:-148.943,0,-85.26	1/1:128:1,127:1:36:127:4560:-406.963,-34.9336,0	0/1:108:48,60:48:1716:60:2152:-161.436,0,-122.214	0/1:45:15,30:15:536:30:1080:-83.9669,0,-35.0285	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	0/1:83:38,45:38:1364:45:1611:-120.295,0,-98.0752	0/1:46:17,29:17:608:29:1034:-79.5261,0,-41.2046	0/1:173:76,97:76:2686:97:3470:-260.431,0,-189.905	0/1:146:68,78:68:2424:78:2789:-207.294,0,-173.976	0/1:120:68,52:68:2421:52:1838:-129.574,0,-182.021	0/1:89:53,36:53:1896:36:1296:-90.1523,0,-144.126	0/1:38:4,34:4:144:34:1205:-97.3148,0,-1.87448	0/1:74:38,36:38:1364:36:1288:-93.9474,0,-100.784	0/1:303:164,139:164:5854:139:4973:-356.501,0,-435.758	0/1:215:94,121:94:3357:121:4328:-324.969,0,-237.624	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:212:105,107:105:3749:107:3843:-282.246,0,-273.791	0/1:142:65,77:65:2328:77:2760:-205.838,0,-167.034	1/1:154:0,154:0:0:154:5502:-495.304,-46.3586,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:242:0,242:0:0:242:8700:-782.98,-72.8493,0	1/1:199:0,199:0:0:199:7124:-641.215,-59.905,0	1/1:64:0,64:0:0:64:2298:-207.081,-19.2659,0	.:.:.:.:.:.:.:.	0/1:125:52,73:52:1853:73:2608:-197.34,0,-129.419	1/1:42:0,42:0:0:42:1502:-135.474,-12.6433,0	0/1:36:16,20:16:572:20:720:-54.2917,0,-40.9763	0/1:84:39,45:39:1396:45:1604:-119.363,0,-100.653	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	0/1:40:18,22:18:644:22:792:-59.5645,0,-46.2494	0/1:151:84,67:84:3008:67:2400:-170.801,0,-225.496	0/1:152:68,84:68:2421:84:3016:-225.844,0,-172.388	1/1:85:0,85:0:0:85:3044:-274.189,-25.5876,0	1/1:130:1,129:1:36:129:4586:-409.306,-35.5356,0	1/1:45:0,45:0:0:45:1601:-144.378,-13.5464,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:72:29,43:29:1044:43:1529:-116.227,0,-72.6006	0/1:39:30,9:30:1076:9:324:-17.7657,0,-85.4127	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:114:0,114:0:0:114:4084:-367.746,-34.3174,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:53:0,53:0:0:53:1890:-170.119,-15.9546,0	0/1:119:54,65:54:1936:65:2328:-173.957,0,-138.694	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:197:0,197:0:0:197:7042:-633.84,-59.3029,0	0/1:127:69,58:69:2453:58:2074:-148.7,0,-182.793	0/1:68:42,26:42:1496:26:932:-63.7288,0,-114.465	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:145:63,82:63:2256:82:2943:-221.454,0,-159.654	0/1:84:61,23:61:2184:23:824:-49.1968,0,-171.539	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:38:0,38:0:0:38:1338:-120.715,-11.4391,0	1/1:117:0,117:0:0:117:4168:-375.302,-35.2205,0	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5237	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	0/1:70:30,40:30:1072:40:1436:-108.466,0,-75.7204	1/1:399:0,399:0:0:399:14233:-1280.7,-120.111,0	1/1:111:0,111:0:0:111:3984:-358.749,-33.4143,0	0/1:88:57,31:57:2037:31:1116:-74.2611,0,-157.11	0/1:123:73,50:73:2608:50:1774:-122.913,0,-197.942	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	1/1:100:0,100:0:0:100:3588:-323.126,-30.103,0	1/1:129:0,129:0:0:129:4599:-414.061,-38.8329,0	1/1:177:0,177:0:0:177:6318:-568.623,-53.2823,0	1/1:124:0,124:0:0:124:4439:-399.68,-37.3277,0	1/1:88:1,87:1:36:87:3132:-278.506,-22.8924,0	0/1:109:47,62:47:1684:62:2228:-167.963,0,-119.035	1/1:182:1,181:1:36:181:6507:-582.11,-51.1892,0	0/1:53:24,29:24:864:29:1036:-77.5993,0,-62.128	1/1:82:0,82:0:0:82:2922:-263.023,-24.6845,0	1/1:78:0,78:0:0:78:2808:-252.951,-23.4803,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:31:23,8:23:824:8:288:-16.9355,0,-65.1514	0/1:63:35,28:35:1256:28:1008:-72.0715,0,-94.3804	1/1:54:0,54:0:0:54:1925:-173.525,-16.2556,0	1/1:128:0,128:0:0:128:4591:-413.352,-38.5318,0
chr04	3475229	.	G	A	137429	PASS	AB=0.504425;ABP=3.66366;AC=141;AF=0.766304;AN=184;AO=6473;CIGAR=1X;DP=8386;DPB=8386;DPRA=0;EPP=14041.6;EPPR=4152.69;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9464;MQMR=59.9958;NS=92;NUMALT=1;ODDS=0.850031;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=230710;QR=67782;RO=1911;RPL=6467;RPP=14006.9;RPPR=4144.01;RPR=6;RUN=1;SAF=6467;SAP=14006.9;SAR=6;SRF=1910;SRP=4144.01;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:120:3,117:3:108:117:4192:-367.378,-26.0484,0	1/1:106:0,106:0:0:106:3761:-338.688,-31.9092,0	1/1:155:1,154:1:36:154:5494:-490.989,-43.0614,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:51:0,51:0:0:51:1805:-162.73,-15.3525,0	0/1:102:50,52:50:1788:52:1844:-135.535,0,-130.498	1/1:145:0,145:0:0:145:5142:-462.926,-43.6494,0	0/1:81:38,43:38:1356:43:1532:-113.79,0,-97.9571	1/1:83:0,83:0:0:83:2943:-265.016,-24.9855,0	1/1:49:0,49:0:0:49:1742:-157.06,-14.7505,0	1/1:86:0,86:0:0:86:3069:-276.431,-25.8886,0	0/1:86:34,52:34:1199:52:1856:-141.428,0,-82.3262	1/1:131:0,131:0:0:131:4660:-419.557,-39.4349,0	0/1:109:49,60:49:1737:60:2148:-160.775,0,-123.8	0/1:45:15,30:15:531:30:1072:-83.2461,0,-34.5756	1/1:77:0,77:0:0:77:2755:-248.191,-23.1793,0	0/1:84:38,46:38:1351:46:1619:-120.711,0,-96.6031	0/1:45:17,28:17:604:28:987:-75.5967,0,-41.1443	0/1:170:76,94:76:2674:94:3362:-251.621,0,-189.729	0/1:138:63,75:63:2193:75:2664:-198.463,0,-156.091	0/1:120:68,52:68:2408:52:1836:-129.394,0,-180.851	0/1:89:51,38:51:1823:38:1368:-96.6292,0,-137.559	1/1:37:3,34:3:108:34:1212:-99.3112,-1.06294,0	0/1:71:36,35:36:1292:35:1252:-91.6119,0,-95.2106	0/1:299:161,138:161:5709:138:4918:-352.689,0,-423.922	0/1:211:93,118:93:3310:118:4193:-314.028,0,-234.601	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:207:101,105:101:3568:105:3747:-275.057,0,-258.957	0/1:139:64,75:64:2275:75:2680:-199.545,0,-163.169	1/1:152:0,152:0:0:152:5435:-489.279,-45.7566,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	.:.:.:.:.:.:.:.	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:236:0,236:0:0:236:8439:-759.513,-71.0431,0	1/1:198:0,198:0:0:198:7000:-630.068,-59.6039,0	1/1:62:0,62:0:0:62:2215:-199.614,-18.6639,0	.:.:.:.:.:.:.:.	0/1:123:52,71:52:1851:71:2536:-191.465,0,-129.843	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	0/1:80:35,45:35:1239:45:1612:-121.288,0,-87.7313	1/1:84:0,84:0:0:84:2996:-269.873,-25.2865,0	0/1:41:18,23:18:644:23:828:-62.5019,0,-45.9484	0/1:147:80,67:80:2843:67:2393:-171.376,0,-211.857	0/1:156:71,85:71:2500:85:3020:-225.061,0,-178.289	1/1:83:0,83:0:0:83:2967:-267.26,-24.9855,0	1/1:124:0,124:0:0:124:4425:-398.421,-37.3277,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:72:29,43:29:1040:43:1540:-117.219,0,-72.2402	0/1:38:29,9:29:1036:9:320:-17.7032,0,-82.1148	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:112:0,112:0:0:112:3987:-359.02,-33.7154,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:4,5:4:144:5:168:-12.7417,0,-10.6043	1/1:53:1,52:1:36:52:1851:-163.084,-12.3563,0	0/1:118:55,63:55:1949:63:2245:-166.791,0,-140.163	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:192:1,191:1:36:191:6788:-607.398,-54.1995,0	0/1:123:66,57:66:2334:57:2016:-144.684,0,-173.293	0/1:67:41,26:41:1459:26:920:-62.948,0,-111.436	1/1:50:0,50:0:0:50:1777:-160.212,-15.0515,0	0/1:142:61,81:61:2163:81:2871:-215.882,0,-152.19	0/1:85:61,23:61:2171:23:815:-48.0247,0,-170.01	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:35:0,35:0:0:35:1240:-111.904,-10.5361,0	1/1:112:0,112:0:0:112:4008:-360.909,-33.7154,0	0/1:24:14,10:14:491:10:360:-25.5196,0,-37.2964	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:67:28,39:28:995:39:1388:-105.05,0,-69.695	1/1:391:0,391:0:0:391:13907:-1251.18,-117.703,0	1/1:109:0,109:0:0:109:3895:-350.741,-32.8123,0	0/1:85:54,31:54:1904:31:1112:-74.8038,0,-146.048	0/1:121:72,49:72:2557:49:1756:-121.899,0,-193.954	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	1/1:98:0,98:0:0:98:3506:-315.75,-29.5009,0	1/1:127:0,127:0:0:127:4533:-408.12,-38.2308,0	1/1:174:0,174:0:0:174:6142:-552.795,-52.3792,0	1/1:122:0,122:0:0:122:4355:-392.121,-36.7257,0	1/1:88:0,88:0:0:88:3152:-283.897,-26.4906,0	0/1:106:45,61:45:1591:61:2179:-164.466,0,-111.57	1/1:180:0,180:0:0:180:6425:-578.326,-54.1854,0	0/1:52:24,28:24:847:28:1008:-75.3828,0,-60.8952	1/1:81:0,81:0:0:81:2877:-259.16,-24.3834,0	1/1:78:0,78:0:0:78:2800:-252.231,-23.4803,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:32:24,8:24:838:8:284:-16.2704,0,-66.1034	0/1:63:35,28:35:1248:28:999:-71.2596,0,-93.66	1/1:56:0,56:0:0:56:1988:-179.194,-16.8577,0	1/1:129:0,129:0:0:129:4591:-413.342,-38.8329,0
chr04	3497735	.	T	A	41635.6	PASS	AB=0.52281;ABP=24.1106;AC=46;AF=0.244681;AN=188;AO=2471;CIGAR=1X;DP=9965;DPB=9965;DPRA=1.0787;EPP=5368.72;EPPR=16265.2;GTI=1;LEN=1;MEANALT=1.07407;MQM=59.9073;MQMR=59.9917;NS=94;NUMALT=1;ODDS=4.72612;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87839;QR=267488;RO=7489;RPL=0;RPP=5368.72;RPPR=16265.2;RPR=2471;RUN=1;SAF=2471;SAP=5368.72;SAR=0;SRF=7489;SRP=16265.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:23,20:23:815:20:716:-51.8234,0,-60.7265	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/0:248:248,0:248:8900:0:0:0,-74.6554,-800.98	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.821	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:125:69,56:69:2438:56:2008:-143.342,0,-182.044	0/0:149:149,0:149:5322:0:0:0,-44.8535,-479.111	0/1:97:46,51:46:1648:51:1809:-133.89,0,-119.409	0/0:99:98,1:98:3489:1:36:0,-26.2037,-310.623	0/0:88:88,0:88:3168:0:0:0,-26.4906,-285.343	0/0:162:162,0:162:5776:0:0:0,-48.7669,-519.955	0/1:85:51,34:51:1828:34:1205:-83.1663,0,-139.213	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.895	0/1:63:33,30:33:1176:30:1076:-78.188,0,-87.1829	0/1:116:58,58:58:2084:58:2065:-151.2,0,-152.911	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:38:21,17:21:756:17:612:-43.9743,0,-56.9281	0/1:22:17,5:17:612:5:165:-8.55094,0,-48.7908	0/1:171:71,99:71:2533:99:3472:-261.155,0,-176.685	0/1:189:91,98:91:3256:98:3512:-259.395,0,-236.366	0/1:180:59,121:59:2120:121:4329:-335.599,0,-136.883	0/1:143:66,77:66:2368:77:2729:-202.675,0,-170.331	0/0:80:73,7:73:2628:7:248:0,-1.4182,-214.102	0/1:81:37,44:37:1279:44:1553:-115.676,0,-91.021	0/1:284:140,144:140:5017:144:5156:-378.688,0,-366.182	0/1:177:94,83:94:3338:83:2972:-214.43,0,-247.353	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/1:327:168,159:168:6001:159:5590:-404.456,0,-441.758	0/1:91:42,49:42:1512:49:1733:-128.859,0,-108.981	0/0:77:77,0:77:2715:0:0:0,-23.1793,-244.59	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:192:192,0:192:6892:0:0:0,-57.7978,-620.345	0/0:125:125,0:125:4473:0:0:0,-37.6287,-402.581	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:188:114,74:114:4069:74:2652:-182.332,0,-309.802	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:204:101,103:101:3616:103:3662:-268.372,0,-264.236	0/1:56:36,20:36:1288:20:720:-48.2711,0,-99.3659	0/0:65:65,0:65:2305:0:0:0,-19.5669,-207.71	0/1:129:53,76:53:1908:76:2701:-204.231,0,-133.165	0/1:100:55,45:55:1968:45:1589:-113.195,0,-147.292	0/1:227:108,119:108:3865:119:4237:-313.151,0,-279.71	0/0:74:73,1:73:2586:1:36:0,-18.6779,-229.388	0/0:160:160,0:160:5722:0:0:0,-48.1648,-515.094	0/0:258:258,0:258:9211:0:0:0,-77.6657,-828.958	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:87:31,56:31:1112:56:1951:-149.635,0,-74.2017	0/1:64:24,40:24:860:40:1413:-108.199,0,-58.4559	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:173:172,1:172:6134:1:36:0,-48.4799,-548.561	0/0:103:100,3:100:3520:3:108:0,-20.9309,-306.932	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5381	1/1:12:1,11:1:36:11:373:-30.297,-0.0140851,0	0/0:114:114,0:114:4054:0:0:0,-34.3174,-365.046	0/1:127:79,48:79:2836:48:1724:-117.215,0,-217.247	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:203:203,0:203:7276:0:0:0,-61.1091,-654.891	0/1:226:86,140:86:3031:140:4986:-380.854,0,-204.985	0/1:110:65,45:65:2328:45:1612:-112.257,0,-176.667	0/0:151:151,0:151:5408:0:0:0,-45.4555,-486.85	0/1:29:11,18:11:392:18:644:-49.5607,0,-26.8902	0/1:79:25,54:25:896:54:1883:-145.959,0,-57.179	0/0:75:75,0:75:2685:0:0:0,-22.5772,-241.893	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:45:21,24:21:741:24:864:-64.5362,0,-53.4652	0/0:258:258,0:258:9088:0:0:0,-77.6657,-817.902	0/1:91:46,45:46:1637:45:1585:-115.53,0,-120.223	0/0:173:170,3:170:6049:3:93:0,-43.4015,-535.837	0/0:142:142,0:142:5081:0:0:0,-42.7463,-457.432	0/1:175:74,101:74:2596:101:3594:-270.984,0,-181.203	0/1:125:43,82:43:1540:82:2913:-224.124,0,-101.264	0/1:28:15,13:15:540:13:464:-33.6687,0,-40.5077	0/0:108:108,0:108:3858:0:0:0,-32.5112,-347.412	0/0:180:178,1:178:6358:1:36:0,-50.6459,-568.604	0/0:254:253,1:253:9039:1:36:0,-72.8633,-809.886	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.797	0/1:46:14,32:14:504:32:1148:-89.7825,0,-31.8507	0/0:145:144,0:144:5153:0:0:0,-43.3483,-463.55	0/1:25:13,12:13:468:12:424:-30.9707,0,-34.9339	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.607	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/0:91:90,1:90:3240:1:36:0,-23.7955,-288.222	0/1:147:74,72:74:2660:72:2569:-187.148,0,-195.335	0/1:70:24,45:24:860:45:1620:-124.959,0,-56.591	0/0:173:173,0:173:6163:0:0:0,-52.0782,-554.767	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.924
chr04	3591148	.	TCAT	CCAT,CCAC	54307.7	PASS	AB=0.505647,0.490803;ABP=3.86866,5.28688;AC=142,44;AF=0.763441,0.236559;AN=186;AO=5444,1531;CIGAR=1X3M,1X2M1X;DP=7003;DPB=7003;DPRA=76.1087,1.21437;EPP=11824.5,3327.53;EPPR=0;GTI=6;LEN=1,4;MEANALT=1.80435,2.32653;MQM=23.2371,21.0013;MQMR=0;NS=93;NUMALT=2;ODDS=0.307624;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=125673,53969;QR=0;RO=0;RPL=5444,1531;RPP=11824.5,3327.53;RPPR=0;RPR=0,0;RUN=1,1;SAF=5444,1531;SAP=11824.5,3327.53;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,25,18:0:0:25,18:585,627:-67.0701,-28.4268,-20.901,-38.8499,0,-33.4314	1/2:128:0,63,65:0:0:63,65:1453,2281:-197.388,-102.323,-83.3578,-95.2698,0,-75.7029	1/2:92:0,45,47:0:0:45,47:1036,1657:-141.602,-74.0598,-60.5135,-67.7461,0,-53.5977	1/1:162:0,159,2:0:0:159,2:3658,72:-286.299,-47.8638,0,-283.145,-44.6909,-282.543	1/1:47:0,47,0:0:0:47,0:1081,0:-84.8027,-14.1484,0,-84.8027,-14.1484,-84.8027	1/1:67:0,67,0:0:0:67,0:1553,0:-122.155,-20.169,0,-122.155,-20.169,-122.155	1/2:111:0,53,58:0:0:53,58:1220,2060:-170.901,-91.3669,-75.4123,-79.7382,0,-62.2785	1/1:120:0,118,1:0:0:118,1:2729,36:-214.031,-35.5215,0,-212.454,-33.9303,-212.153	1/1:93:0,92,0:0:0:92,0:2120,0:-165.984,-27.6948,0,-165.984,-27.6948,-165.984	1/2:78:0,38,39:0:0:38,39:873,1361:-118.055,-61.1858,-49.7467,-56.8341,0,-45.0939	1/1:15:0,15,0:0:0:15,0:345,0:-27.2008,-4.51545,0,-27.2008,-4.51545,-27.2008	1/2:22:0,10,12:0:0:10,12:231,421:-34.1531,-19.0763,-16.066,-15.281,0,-11.6687	1/2:22:0,8,14:0:0:8,14:185,496:-34.3235,-22.2441,-19.8358,-12.2832,0,-8.06882	1/2:32:0,18,14:0:0:18,14:414,503:-49.2597,-22.2821,-16.8636,-27.1824,0,-22.968	1/2:31:0,13,18:0:0:13,18:312,642:-49.492,-28.5647,-24.6513,-21.138,0,-15.7195	1/1:32:0,32,0:0:0:32,0:736,0:-57.8017,-9.63296,0,-57.8017,-9.63296,-57.8017	1/1:20:0,20,0:0:0:20,0:460,0:-36.2011,-6.0206,0,-36.2011,-6.0206,-36.2011	1/1:21:0,21,0:0:0:21,0:485,0:-38.1817,-6.32163,0,-38.1817,-6.32163,-38.1817	1/1:7:0,7,0:0:0:7,0:161,0:-12.8004,-2.10721,0,-12.8004,-2.10721,-12.8004	1/2:167:0,97,69:0:0:97,69:2232,2425:-253.944,-108.453,-79.2533,-145.49,0,-124.719	1/1:100:0,96,1:0:0:96,1:2207,36:-172.638,-28.8989,0,-171.061,-27.3458,-170.76	1/1:119:0,118,0:0:0:118,0:2727,0:-213.837,-35.5215,0,-213.837,-35.5215,-213.837	1/1:134:0,132,1:0:0:132,1:3069,36:-241.393,-39.736,0,-239.816,-38.1448,-239.515	1/1:111:0,111,0:0:0:111,0:2558,0:-200.726,-33.4143,0,-200.726,-33.4143,-200.726	1/2:69:0,43,25:0:0:43,25:994,886:-104.225,-39.3214,-26.3771,-64.9276,0,-57.4019	1/2:243:0,129,113:0:0:129,113:2964,4014:-371.017,-177.917,-139.084,-193.016,0,-158.999	1/1:135:0,135,0:0:0:135,0:3131,0:-246.087,-40.6391,0,-246.087,-40.6391,-246.087	1/2:17:0,8,9:0:0:8,9:184,322:-26.3827,-14.3945,-11.9863,-12.1922,0,-9.48293	1/1:204:0,204,0:0:0:204,0:4694,0:-367.591,-61.4101,0,-367.591,-61.4101,-367.591	1/2:178:0,105,73:0:0:105,73:2430,2570:-272.605,-114.955,-83.3464,-157.855,0,-135.88	1/1:185:0,184,1:0:0:184,1:4239,36:-332.372,-55.3895,0,-330.795,-53.604,-330.494	1/1:6:0,6,0:0:0:6,0:138,0:-11.0003,-1.80618,0,-11.0003,-1.80618,-11.0003	1/1:11:0,11,0:0:0:11,0:253,0:-20.0006,-3.31133,0,-20.0006,-3.31133,-20.0006	1/2:3:0,2,1:0:0:2,1:46,36:-4.77783,-1.78555,-1.18349,-3.19805,0,-2.89702	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:23,0:-2.00006,-0.30103,0,-2.00006,-0.30103,-2.00006	1/1:85:0,85,0:0:0:85,0:1955,0:-153.205,-25.5876,0,-153.205,-25.5876,-153.205	1/2:175:0,77,96:0:0:77,96:1786,3379:-267.974,-150.934,-127.755,-116.977,0,-88.078	1/2:18:0,6,12:0:0:6,12:136,426:-27.9982,-19.1075,-17.3013,-9.09225,0,-5.47989	1/1:1:0,1,0:0:0:1,0:23,0:-2.00006,-0.30103,0,-2.00006,-0.30103,-2.00006	1/2:129:0,68,61:0:0:68,61:1566,2121:-198.003,-95.8937,-75.4237,-102.314,0,-83.9508	1/1:13:0,13,0:0:0:13,0:299,0:-23.6007,-3.91339,0,-23.6007,-3.91339,-23.6007	1/2:112:0,54,58:0:0:54,58:1243,2035:-172.48,-91.4469,-75.1913,-81.2373,0,-63.7775	1/2:23:0,8,15:0:0:8,15:185,537:-35.9315,-23.8521,-21.4438,-12.2832,0,-7.76779	1/2:21:0,10,11:0:0:10,11:230,394:-32.5337,-17.5476,-14.5373,-15.1902,0,-11.8789	1/1:97:0,96,0:0:0:96,0:2226,0:-174.985,-28.8989,0,-174.985,-28.8989,-174.985	1/1:104:0,104,0:0:0:104,0:2405,0:-188.846,-31.3071,0,-188.846,-31.3071,-188.846	1/2:167:0,79,87:0:0:79,87:1819,3036:-254.989,-136.389,-112.608,-118.603,0,-92.413	1/1:108:0,108,0:0:0:108,0:2512,0:-197.665,-32.5112,0,-197.665,-32.5112,-197.665	1/1:105:0,105,0:0:0:105,0:2417,0:-189.385,-31.6082,0,-189.385,-31.6082,-189.385	1/1:114:0,114,0:0:0:114,0:2636,0:-206.936,-34.3174,0,-206.936,-34.3174,-206.936	1/2:10:0,7,3:0:0:7,3:161,106:-15.4203,-4.93299,-2.82578,-10.6932,0,-9.79008	1/2:109:0,55,54:0:0:55,54:1304,1923:-171.998,-85.2364,-68.6798,-86.9702,0,-70.7146	1/2:72:0,49,23:0:0:49,23:1127,807:-109.804,-36.3577,-21.6072,-73.6522,0,-66.7285	1/1:5:0,5,0:0:0:5,0:115,0:-9.20027,-1.50515,0,-9.20027,-1.50515,-9.20027	1/2:62:0,35,26:0:0:35,26:806,923:-93.372,-40.8207,-30.2846,-52.5475,0,-44.7207	1/2:59:0,27,31:0:0:27,31:621,1096:-89.2795,-48.8092,-40.6814,-40.4929,0,-31.1609	1/1:5:0,5,0:0:0:5,0:115,0:-9.20027,-1.50515,0,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chr04	3626022	.	C	T	127901	PASS	AB=0.577335;ABP=172.621;AC=142;AF=0.755319;AN=188;AO=6046;CIGAR=1X;DP=7440;DPB=7440;DPRA=26.6559;EPP=13131.7;EPPR=3027.87;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9897;MQMR=59.9576;NS=94;NUMALT=1;ODDS=0.731309;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214767;QR=49227;RO=1393;RPL=6046;RPP=13131.7;RPPR=3019.19;RPR=0;RUN=1;SAF=6046;SAP=13131.7;SAR=0;SRF=1392;SRP=3019.19;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	1/1:139:0,139:0:0:139:4930:-443.852,-41.8432,0	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0	1/1:167:0,167:0:0:167:5923:-533.179,-50.272,0	1/1:30:1,29:1:36:29:1040:-90.3161,-5.43263,0	1/1:26:0,26:0:0:26:927:-83.7474,-7.82678,0	0/1:59:26,33:26:908:33:1176:-88.387,0,-64.2745	1/1:134:0,134:0:0:134:4741:-426.852,-40.338,0	0/1:43:19,24:19:672:24:856:-64.4168,0,-47.8625	1/1:117:0,117:0:0:117:4111:-370.172,-35.2205,0	1/1:54:0,54:0:0:54:1891:-170.463,-16.2556,0	1/1:71:1,70:1:36:70:2485:-220.304,-17.7749,0	0/1:61:37,24:37:1285:24:860:-59.359,0,-97.5859	1/1:70:0,70:0:0:70:2466:-222.194,-21.0721,0	0/1:50:25,25:25:892:25:854:-62.1177,0,-65.5482	0/1:51:25,26:25:891:26:923:-68.0342,0,-65.1562	1/1:96:0,96:0:0:96:3424:-308.374,-28.8989,0	0/1:68:22,46:22:783:46:1606:-124.355,0,-50.3229	0/1:43:24,19:24:864:19:676:-48.2237,0,-65.1383	0/1:138:41,97:41:1468:97:3431:-267.461,0,-90.3833	0/1:111:62,49:62:2208:49:1730:-122.569,0,-165.571	0/1:83:50,33:50:1745:33:1184:-81.8828,0,-132.344	0/1:28:12,16:12:428:16:567:-42.9319,0,-30.43	1/1:84:3,81:3:108:81:2877:-249.091,-15.2114,0	0/1:16:5,11:5:171:11:396:-31.1663,0,-10.909	0/1:240:60,180:60:2121:180:6401:-503.932,0,-118.91	0/1:97:26,71:26:919:71:2533:-199.02,0,-53.8263	1/1:31:0,31:0:0:31:1081:-97.5964,-9.33193,0	0/1:106:21,85:21:743:85:3025:-240.571,0,-35.2842	0/1:183:65,118:65:2273:118:4185:-321.743,0,-149.741	1/1:99:1,98:1:32:98:3460:-308.412,-26.6027,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:16:11,5:11:392:5:176:-11.3685,0,-30.8036	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:178:0,178:0:0:178:6311:-568.084,-53.5833,0	1/1:168:1,167:1:36:167:5926:-529.854,-46.9748,0	1/1:78:0,78:0:0:78:2777:-250.17,-23.4803,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:114:51,63:51:1823:63:2239:-167.455,0,-130.033	1/1:41:0,41:0:0:41:1454:-131.154,-12.3422,0	0/1:103:48,54:48:1716:54:1932:-143.092,0,-123.661	0/1:70:34,36:34:1216:36:1274:-93.8894,0,-88.6745	1/1:75:1,74:1:36:74:2636:-233.889,-18.979,0	0/1:58:24,34:24:847:34:1202:-91.0245,0,-59.089	0/1:110:39,71:39:1370:71:2527:-194.568,0,-90.4837	0/1:118:36,82:36:1265:82:2926:-228.052,0,-78.6288	1/1:112:0,112:0:0:112:3993:-359.56,-33.7154,0	1/1:147:0,147:0:0:147:5194:-467.601,-44.2514,0	1/1:91:0,91:0:0:91:3225:-290.473,-27.3937,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:76:30,46:30:1057:46:1627:-123.84,0,-72.5607	0/1:31:10,21:10:341:21:739:-57.5004,0,-21.6858	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:110:1,109:1:21:109:3908:-349.813,-31.0134,0	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:20:6,14:6:216:14:500:-39.3156,0,-13.7699	1/1:61:0,61:0:0:61:2150:-193.765,-18.3628,0	0/1:121:66,55:66:2316:55:1955:-139.8,0,-172.275	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:222:0,222:0:0:222:7929:-713.632,-66.8287,0	0/1:155:70,85:70:2469:85:3034:-226.63,0,-175.803	0/1:66:27,39:27:934:39:1360:-102.828,0,-64.5007	1/1:43:0,43:0:0:43:1535:-138.442,-12.9443,0	0/1:104:51,53:51:1805:53:1896:-139.611,0,-131.423	0/1:103:61,42:61:2162:42:1503:-104.558,0,-163.47	1/1:38:0,38:0:0:38:1350:-121.799,-11.4391,0	1/1:55:0,55:0:0:55:1945:-175.325,-16.5567,0	1/1:87:0,87:0:0:87:3093:-278.597,-26.1896,0	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	1/1:76:0,76:0:0:76:2711:-244.234,-22.8783,0	0/1:49:31,18:31:1089:18:636:-42.8176,0,-83.5668	1/1:144:0,144:0:0:144:5102:-459.324,-43.3483,0	1/1:153:0,153:0:0:153:5431:-488.919,-46.0576,0	0/1:75:27,48:27:929:48:1712:-131.788,0,-61.3401	0/1:94:22,72:22:792:72:2546:-201.091,0,-43.3089	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	1/1:95:0,95:0:0:95:3406:-306.754,-28.5979,0	1/1:64:0,64:0:0:64:2295:-206.81,-19.2659,0	1/1:144:0,144:0:0:144:5093:-458.51,-43.3483,0	1/1:109:0,109:0:0:109:3866:-348.135,-32.8123,0	1/1:65:0,65:0:0:65:2303:-207.531,-19.567,0	0/1:120:55,65:55:1954:65:2304:-171.495,0,-140.011	1/1:162:1,161:1:36:161:5731:-512.311,-45.1686,0	0/1:40:17,23:17:599:23:819:-61.9904,0,-42.1969	1/1:109:0,109:0:0:109:3904:-350.698,-32.8123,0	1/1:70:0,70:0:0:70:2482:-223.631,-21.0721,0	1/1:51:0,51:0:0:51:1805:-162.73,-15.3525,0	0/1:116:64,52:64:2260:52:1863:-133.029,0,-168.742	0/1:82:53,29:53:1883:29:1023:-67.6973,0,-145.063	1/1:73:0,73:0:0:73:2607:-234.878,-21.9752,0	1/1:76:1,75:1:36:75:2678:-237.666,-19.28,0
chr04	3626190	.	C	T	120739	PASS	AB=0.50253;ABP=3.20804;AC=140;AF=0.752688;AN=186;AO=5773;CIGAR=1X;DP=7564;DPB=7564;DPRA=33.2264;EPP=12538.9;EPPR=3885.6;GTI=0;LEN=1;MEANALT=1.03297;MQM=59.97;MQMR=59.9994;NS=93;NUMALT=1;ODDS=3.20673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205047;QR=63936;RO=1788;RPL=5773;RPP=12538.9;RPPR=3885.6;RPR=0;RUN=1;SAF=0;SAP=12538.9;SAR=5773;SRF=0;SRP=3885.6;SRR=1788;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:18,27:18:644:27:949:-72.1764,0,-44.7442	1/1:72:0,72:0:0:72:2479:-223.355,-21.6742,0	1/1:199:0,199:0:0:199:7035:-633.207,-59.905,0	1/1:159:1,158:1:36:158:5638:-503.81,-44.2655,0	1/1:32:0,32:0:0:32:1129:-101.916,-9.63296,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:86:64,22:64:2292:22:777:-44.3618,0,-180.653	1/1:99:0,99:0:0:99:3520:-316.518,-29.802,0	0/1:111:49,62:49:1760:62:2220:-166.65,0,-125.27	1/1:54:0,54:0:0:54:1906:-171.814,-16.2556,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:100:0,100:0:0:100:3545:-319.256,-30.103,0	0/1:85:42,43:42:1500:43:1527:-112.134,0,-109.707	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:86:39,47:39:1400:47:1692:-126.678,0,-100.411	0/1:77:34,43:34:1224:43:1510:-113.01,0,-87.2877	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:23:8,15:8:288:15:540:-42.0128,0,-19.3437	0/1:29:14,15:14:504:15:525:-38.8482,0,-36.9682	0/1:137:85,52:85:3018:52:1808:-121.752,0,-230.608	0/1:181:91,90:91:3264:90:3205:-234.13,0,-239.494	0/1:54:36,18:36:1296:18:625:-40.3169,0,-100.688	0/1:134:84,50:84:2993:50:1728:-115.459,0,-229.263	1/1:78:2,76:2:72:76:2686:-235.146,-16.6436,0	0/1:62:32,30:32:1137:30:1065:-77.4959,0,-83.9731	0/1:212:96,116:96:3429:116:4140:-308.966,0,-245.004	0/1:246:103,143:103:3696:143:5049:-380.501,0,-258.788	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:234:100,133:100:3592:133:4719:-354.368,0,-252.986	0/1:39:22,17:22:784:17:612:-43.6733,0,-59.1437	1/1:106:0,106:0:0:106:3793:-341.549,-31.9092,0	0/1:6:4,2:4:140:2:68:-4.65153,0,-11.1384	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:3,1:3:93:1:36:-2.39415,0,-7.47261	1/1:191:3,188:3:108:188:6633:-586.97,-47.4216,0	1/1:67:0,67:0:0:67:2386:-214.996,-20.169,0	1/1:73:2,71:2:72:71:2552:-223.093,-15.1385,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:35:16,19:16:576:19:669:-49.9979,0,-41.6389	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	0/1:103:65,38:65:2332:38:1338:-89.7099,0,-179.133	0/1:62:30,32:30:1080:32:1144:-84.6057,0,-78.8494	1/1:87:0,87:0:0:87:3082:-277.607,-26.1896,0	0/1:28:9,19:9:309:19:680:-53.1003,0,-19.7119	0/1:97:50,47:50:1765:47:1660:-120.485,0,-129.931	0/1:108:51,57:51:1824:57:2017:-149.29,0,-131.93	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:91:1,90:1:36:90:3236:-287.862,-23.7955,0	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:100:49,51:49:1748:51:1817:-133.706,0,-127.501	0/1:91:40,51:40:1436:51:1817:-136.416,0,-102.144	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:167:0,167:0:0:167:5936:-534.338,-50.272,0	1/1:27:2,25:2:72:25:881:-72.7691,-1.29109,0	1/1:15:0,15:0:0:15:506:-45.8578,-4.51545,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:74:0,73:0:0:73:2616:-235.367,-21.9752,0	0/1:101:55,46:55:1968:46:1652:-118.564,0,-146.991	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:210:0,210:0:0:210:7402:-666.172,-63.2163,0	0/1:126:48,78:48:1709:78:2804:-214.669,0,-116.164	0/1:32:14,18:14:504:18:648:-49.0189,0,-36.0651	1/1:90:0,90:0:0:90:3144:-283.181,-27.0927,0	0/1:138:65,73:65:2319:73:2578:-190.725,0,-167.428	0/1:153:88,65:88:3141:65:2325:-163.451,0,-236.857	1/1:43:0,43:0:0:43:1533:-138.262,-12.9443,0	1/1:60:1,59:1:36:59:2116:-187.11,-14.4635,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	0/1:17:8,9:8:284:9:320:-24.0248,0,-20.7858	1/1:63:0,63:0:0:63:2245:-202.312,-18.9649,0	0/1:108:53,54:53:1904:54:1932:-141.737,0,-139.218	1/1:186:0,186:0:0:186:6624:-596.236,-55.9916,0	1/1:194:0,194:0:0:194:6902:-621.246,-58.3998,0	0/1:54:23,31:23:824:31:1093:-82.422,0,-58.2277	0/1:73:32,41:32:1152:41:1441:-108.009,0,-82.015	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	1/1:140:0,140:0:0:140:4953:-445.917,-42.1442,0	1/1:107:0,107:0:0:107:3764:-338.958,-32.2102,0	1/1:100:0,100:0:0:100:3562:-320.781,-30.103,0	1/1:79:0,79:0:0:79:2813:-253.408,-23.7814,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	0/1:48:19,29:19:680:29:1044:-79.8254,0,-47.0797	1/1:119:1,118:1:36:118:4229:-377.189,-32.2243,0	0/1:31:12,19:12:432:19:665:-50.8409,0,-29.8893	1/1:66:0,66:0:0:66:2364:-213.01,-19.868,0	1/1:88:0,88:0:0:88:3134:-282.283,-26.4906,0	1/1:38:1,37:1:36:37:1320:-115.497,-7.84087,0	0/1:94:52,42:52:1855:42:1508:-107.718,0,-138.932	0/1:89:57,32:57:2032:32:1148:-76.8382,0,-156.361	1/1:131:1,130:1:36:130:4567:-407.593,-35.8367,0	1/1:155:0,155:0:0:155:5536:-498.364,-46.6597,0
chr04	3665679	.	A	T	21514.1	PASS	AB=0.477464;ABP=15.0485;AC=44;AF=0.236559;AN=186;AO=1307;CIGAR=1X;DP=5678;DPB=5678;DPRA=1.13428;EPP=2841.12;EPPR=9373.25;GTI=0;LEN=1;MEANALT=1.04255;MQM=60;MQMR=59.9954;NS=93;NUMALT=1;ODDS=1.05007;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46843;QR=153922;RO=4367;RPL=0;RPP=2841.12;RPPR=9381.89;RPR=1307;RUN=1;SAF=1307;SAP=2841.12;SAR=0;SRF=4366;SRP=9477.15;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:11,23:11:396:23:828:-64.6091,0,-25.7477	0/0:63:63,0:63:2222:0:0:0,-18.9649,-200.241	0/0:99:99,0:99:3484:0:0:0,-29.802,-313.769	0/0:161:161,0:161:5625:0:0:0,-48.4658,-506.285	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:71:45,26:45:1567:26:936:-63.1863,0,-119.941	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.924	0/1:72:45,27:45:1612:27:972:-66.1237,0,-123.696	0/0:87:87,0:87:3056:0:0:0,-26.1896,-275.266	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/0:91:91,0:91:3215:0:0:0,-27.3937,-289.57	0/1:63:33,30:33:1165:30:1080:-78.5484,0,-86.1901	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:58:35,23:35:1251:23:828:-57.3844,0,-95.4345	0/1:31:22,9:22:788:9:324:-20.1739,0,-61.9129	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:28:15,13:15:525:13:468:-34.0308,0,-39.1492	0/1:117:64,53:64:2225:53:1908:-136.777,0,-165.289	0/1:123:73,50:73:2564:50:1800:-125.256,0,-193.978	0/1:68:27,41:27:942:41:1472:-112.306,0,-64.6198	0/1:72:30,42:30:1057:42:1512:-114.7,0,-73.7648	0/1:26:22,4:22:788:4:144:-5.48684,0,-63.418	0/1:57:25,32:25:873:32:1148:-86.4711,0,-61.7258	0/1:208:121,87:121:4244:87:3125:-218.861,0,-319.524	0/1:150:80,69:80:2830:69:2472:-177.52,0,-209.724	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:153:91,62:91:3125:62:2213:-153.375,0,-235.412	0/1:68:29,39:29:991:39:1385:-104.477,0,-69.0229	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:17:5,12:5:172:12:432:-34.1037,0,-10.7005	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:11:7,4:7:233:4:144:-10.0023,0,-17.983	0/0:127:127,0:127:4495:0:0:0,-38.2308,-404.719	0/0:95:95,0:95:3299:0:0:0,-28.5978,-297.124	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	.:.:.:.:.:.:.:.	0/1:103:44,59:44:1542:59:2107:-158.892,0,-108.062	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8171	0/1:60:23,37:23:828:37:1320:-101.04,0,-56.7823	0/1:33:21,12:21:756:12:432:-29.2872,0,-58.4332	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:71:41,30:41:1472:30:1080:-76.1401,0,-111.403	0/1:70:39,31:39:1338:31:1112:-79.3192,0,-99.6389	0/1:122:66,56:66:2338:56:1997:-143.276,0,-173.951	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.465	0/0:65:65,0:65:2279:0:0:0,-19.5669,-205.368	0/0:32:32,0:32:1103:0:0:0,-9.63296,-99.5703	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:78:29,49:29:1021:49:1752:-134.484,0,-68.7199	0/1:33:14,19:14:504:19:676:-51.2334,0,-35.7641	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:122:121,1:121:4283:1:36:0,-33.1274,-382.049	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9338	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:50:28,22:28:996:22:792:-56.5542,0,-74.9034	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:153:153,0:153:5370:0:0:0,-46.0576,-483.433	0/0:102:101,1:101:3557:1:36:0,-27.1068,-316.735	0/1:54:41,13:41:1453:13:468:-26.204,0,-114.808	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/1:111:50,61:50:1746:61:2184:-163.412,0,-124.003	0/1:98:37,61:37:1286:61:2179:-166.875,0,-86.5358	0/0:21:20,0:20:716:0:0:0,-6.0206,-64.408	0/0:14:14,0:14:474:0:0:0,-4.21442,-42.9797	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:28:23,5:23:794:5:180:-8.12322,0,-63.3445	0/0:117:117,0:117:4117:0:0:0,-35.2205,-370.712	0/1:56:25,31:25:888:31:1097:-82.1812,0,-63.3813	0/0:111:111,0:111:3927:0:0:0,-33.4143,-353.621	0/0:109:109,0:109:3784:0:0:0,-32.8123,-340.754	0/1:52:30,22:30:1076:22:784:-55.2304,0,-81.4993	0/1:56:27,29:27:942:29:1040:-77.0567,0,-68.2321	0/1:9:6,3:6:208:3:108:-7.3659,0,-16.3498	0/0:61:61,0:61:2109:0:0:0,-18.3628,-190.071	0/0:68:68,0:68:2368:0:0:0,-20.47,-213.373	0/0:182:182,0:182:6399:0:0:0,-54.7875,-576.001	0/0:67:67,0:67:2370:0:0:0,-20.169,-213.555	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/1:27:14,12:14:504:12:432:-31.0346,0,-37.5115	0/0:95:93,2:93:3336:2:72:0,-21.7611,-293.62	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7167	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.374	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:72:36,36:36:1281:36:1292:-94.9096,0,-93.9171	0/1:63:21,42:21:756:42:1508:-117.05,0,-49.4023	0/0:91:90,0:90:3156:0:0:0,-27.0927,-284.061	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.882
chr04	3665915	.	TGT	CGT	113180	PASS	AB=0.511892;ABP=6.47063;AC=143;AF=0.768817;AN=186;AO=5262;CIGAR=1X2M;DP=6664;DPB=6669.67;DPRA=24.1341;EPP=11230.4;EPPR=2945.46;GTI=1;LEN=1;MEANALT=1.27174;MQM=59.9875;MQMR=59.992;NS=93;NUMALT=1;ODDS=3.0836;PAIRED=0;PAIREDR=0;PAO=8.5;PQA=302;PQR=0;PRO=0;QA=187221;QR=48075;RO=1371;RPL=5262;RPP=11429.3;RPPR=2980.1;RPR=0;RUN=1;SAF=5239;SAP=11230.4;SAR=23;SRF=1367;SRP=2945.46;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:24,18:24:858:18:636:-44.9248,0,-64.8985	1/1:53:0,53:0:0:53:1848:-166.464,-15.9546,0	1/1:41:0,41:0:0:41:1476:-133.077,-12.3422,0	1/1:104:0,103:0:0:103:3647:-328.104,-31.0061,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:39:0,39:0:0:39:1388:-125.16,-11.7402,0	0/1:103:61,42:61:2144:42:1491:-103.478,0,-162.222	1/1:169:0,167:0:0:167:5906:-531.297,-50.272,0	0/1:73:34,38:34:1203:38:1339:-98.7168,0,-86.4818	1/1:62:0,59:0:0:59:2094:-188.385,-17.7608,0	1/1:118:1,117:1:36:117:4166:-371.525,-31.9233,0	1/1:103:0,103:0:0:103:3657:-329.327,-31.0061,0	0/1:81:41,40:41:1436:40:1424:-104.074,0,-105.151	1/1:87:0,87:0:0:87:3090:-278.328,-26.1896,0	0/1:77:34,43:34:1214:43:1527:-114.484,0,-86.3292	0/1:53:26,27:26:926:27:968:-71.4828,0,-67.7029	1/1:89:0,89:0:0:89:3185:-286.872,-26.7917,0	0/1:57:25,32:25:877:32:1120:-83.9462,0,-62.0885	0/1:65:35,30:35:1229:30:1072:-77.2255,0,-91.3461	0/1:121:65,56:65:2289:56:2004:-144.209,0,-169.845	0/1:119:47,71:47:1620:71:2535:-192.46,0,-110.145	0/1:46:22,21:22:767:21:752:-54.7082,0,-56.0514	0/1:40:21,19:21:738:19:668:-48.4045,0,-54.7014	1/1:71:0,70:0:0:70:2508:-225.632,-21.0721,0	0/1:33:13,19:13:455:19:684:-52.0114,0,-31.4009	0/1:171:85,84:85:2999:84:3003:-219.267,0,-218.909	0/1:119:45,74:45:1550:74:2632:-201.243,0,-103.904	1/1:40:0,39:0:0:39:1400:-125.939,-11.7402,0	0/1:95:44,51:44:1553:51:1815:-135.033,0,-111.463	0/1:93:53,40:53:1832:40:1417:-99.8296,0,-137.161	1/1:101:0,101:0:0:101:3567:-321.239,-30.404,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	.:.:.:.:.:.:.:.	0/1:7:4,3:4:141:3:108:-7.96796,0,-10.9297	1/1:245:0,245:0:0:245:8717:-784.464,-73.7524,0	1/1:69:0,69:0:0:69:2440:-219.854,-20.7711,0	1/1:117:1,116:1:36:116:4134:-368.646,-31.6222,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:209:110,99:110:3861:99:3517:-253.822,0,-284.773	1/1:43:0,42:0:0:42:1499:-134.844,-12.6433,0	0/1:45:15,28:15:535:28:999:-76.9905,0,-35.2469	0/1:74:36,38:36:1253:38:1364:-100.784,0,-90.7939	1/1:70:0,70:0:0:70:2466:-222.195,-21.0721,0	0/1:65:30,35:30:1054:35:1236:-91.9754,0,-75.6027	0/1:41:20,21:20:660:21:741:-54.6694,0,-47.3673	0/1:51:25,26:25:886:26:913:-67.1315,0,-64.7059	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:48:0,47:0:0:47:1664:-149.685,-14.1484,0	1/1:105:0,105:0:0:105:3762:-338.778,-31.6082,0	1/1:4:0,4:0:0:4:144:-13.2685,-1.20412,0	0/1:38:11,27:11:394:27:968:-75.9982,0,-24.3624	0/1:25:14,11:14:478:11:396:-28.457,0,-35.8154	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:163:0,163:0:0:163:5764:-518.819,-49.0679,0	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:138:71,67:71:2462:67:2391:-173.845,0,-180.23	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:80:0,80:0:0:80:2856:-257.278,-24.0824,0	1/1:131:0,131:0:0:131:4648:-418.212,-39.4349,0	0/1:46:24,22:24:847:22:792:-57.7583,0,-62.7009	1/1:31:0,31:0:0:31:1103:-99.5798,-9.33193,0	0/1:89:38,51:38:1344:51:1806:-136.029,0,-94.4683	0/1:78:55,23:55:1932:23:828:-51.3638,0,-150.674	1/1:52:0,52:0:0:52:1837:-165.608,-15.6536,0	1/1:90:0,90:0:0:90:3205:-288.672,-27.0927,0	1/1:90:0,89:0:0:89:3191:-287.053,-26.7917,0	0/1:23:12,11:12:432:11:379:-27.5169,0,-32.2975	1/1:80:0,80:0:0:80:2848:-256.559,-24.0824,0	0/1:26:6,20:6:208:20:720:-57.302,0,-11.2317	1/1:140:0,140:0:0:140:4971:-447.54,-42.1442,0	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	0/1:33:7,26:7:252:26:936:-74.6255,0,-13.095	0/1:37:21,16:21:750:16:564:-39.9522,0,-56.688	0/1:8:3,5:3:103:5:180:-14.1438,0,-7.20136	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:93:0,93:0:0:93:3310:-298.119,-27.9958,0	1/1:102:0,102:0:0:102:3617:-325.737,-30.7051,0	1/1:94:2,92:2:70:92:3270:-287.873,-21.6495,0	0/1:112:63,49:63:2186:49:1751:-124.158,0,-163.289	1/1:170:0,166:0:0:166:5935:-533.927,-49.971,0	0/1:56:26,30:26:926:30:1054:-78.2533,0,-66.7425	1/1:89:0,88:0:0:88:3102:-278.989,-26.4906,0	1/1:106:0,106:0:0:106:3787:-341.029,-31.9092,0	1/1:80:0,80:0:0:80:2848:-256.557,-24.0824,0	0/1:137:45,92:45:1557:92:3282:-254.358,0,-99.1764	0/1:80:47,32:47:1658:32:1152:-79.8489,0,-125.365	1/1:46:0,43:0:0:43:1544:-138.9,-12.9443,0	1/1:106:0,105:0:0:105:3732:-335.661,-31.6082,0
chr04	3689540	.	A	G	119994	PASS	AB=0.506617;ABP=4.24608;AC=142;AF=0.763441;AN=186;AO=5664;CIGAR=1X;DP=7276;DPB=7276;DPRA=0;EPP=12258.8;EPPR=3479.56;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.952;MQMR=59.9975;NS=93;NUMALT=1;ODDS=0.374476;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201342;QR=57717;RO=1609;RPL=5659;RPP=12258.8;RPPR=3479.56;RPR=5;RUN=1;SAF=0;SAP=12302.2;SAR=5664;SRF=0;SRP=3496.91;SRR=1609;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:27,22:27:968:22:757:-53.6936,0,-72.6869	1/1:98:0,98:0:0:98:3488:-314.122,-29.5009,0	1/1:103:0,103:0:0:103:3648:-328.525,-31.0061,0	1/1:150:0,150:0:0:150:5327:-479.566,-45.1545,0	1/1:57:0,57:0:0:57:2032:-183.152,-17.1587,0	1/1:62:0,62:0:0:62:2211:-199.254,-18.6639,0	0/1:144:59,85:59:2112:85:3016:-227.95,0,-147.001	1/1:110:0,110:0:0:110:3913:-352.35,-33.1133,0	0/1:59:30,28:30:1072:28:991:-71.6842,0,-78.973	1/1:76:0,76:0:0:76:2696:-242.885,-22.8783,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:67:0,67:0:0:67:2382:-214.637,-20.169,0	0/1:60:29,31:29:1044:31:1096:-80.8881,0,-76.213	1/1:61:0,61:0:0:61:2191:-197.456,-18.3628,0	0/1:45:26,19:26:936:19:664:-46.5363,0,-71.0131	0/1:41:24,17:24:860:17:600:-41.987,0,-65.3796	1/1:57:0,57:0:0:57:2018:-181.892,-17.1587,0	0/1:35:21,14:21:756:14:504:-35.162,0,-57.8312	0/1:33:19,14:19:680:14:496:-35.0403,0,-51.5952	0/1:159:71,88:71:2548:88:3156:-236.398,0,-181.707	0/1:137:74,63:74:2652:63:2217:-157.994,0,-197.685	0/1:100:60,40:60:2156:40:1416:-97.6343,0,-164.204	0/1:79:30,49:30:1080:49:1764:-135.262,0,-73.7319	1/1:101:5,96:5:180:96:3390:-288.765,-13.852,0	0/1:35:18,17:18:648:17:603:-44.0635,0,-48.1158	0/1:201:81,120:81:2908:120:4256:-322.696,0,-201.448	0/1:163:83,80:83:2961:80:2840:-206.77,0,-217.654	1/1:40:0,40:0:0:40:1405:-126.745,-12.0412,0	0/1:231:110,121:110:3933:121:4308:-318.359,0,-284.623	0/1:104:49,55:49:1764:55:1959:-145.278,0,-127.737	1/1:91:0,91:0:0:91:3251:-292.81,-27.3937,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:9:2,7:2:72:7:243:-19.4982,0,-4.12745	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	1/1:196:0,196:0:0:196:6982:-628.434,-59.0019,0	1/1:153:0,153:0:0:153:5455:-491.078,-46.0576,0	1/1:68:0,68:0:0:68:2423:-218.326,-20.47,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:117:62,55:62:2224:55:1943:-139.923,0,-165.204	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:73:31,42:31:1108:42:1495:-112.868,0,-78.0558	0/1:54:26,28:26:936:28:977:-71.985,0,-68.3038	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:62:34,28:34:1224:28:992:-70.9305,0,-91.8032	0/1:64:33,31:33:1184:31:1099:-79.9535,0,-87.6024	0/1:120:51,69:51:1832:69:2459:-185.441,0,-129.035	1/1:106:0,106:0:0:106:3732:-336.081,-31.9092,0	1/1:77:0,77:0:0:77:2735:-246.393,-23.1793,0	1/1:140:0,139:0:0:139:4957:-445.958,-41.8432,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:135:66,69:66:2360:69:2467:-181.645,0,-172.02	0/1:41:19,22:19:680:22:785:-58.6321,0,-49.1869	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:77:0,77:0:0:77:2740:-246.842,-23.1793,0	1/1:30:2,28:2:72:28:1004:-83.8391,-2.19418,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:73:0,73:0:0:73:2585:-232.898,-21.9752,0	0/1:110:61,49:61:2196:49:1729:-122.779,0,-164.792	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:142:0,142:0:0:142:5033:-453.117,-42.7463,0	1/1:152:0,152:0:0:152:5382:-484.512,-45.7566,0	0/1:43:27,16:27:972:16:564:-37.3634,0,-74.8536	1/1:85:0,85:0:0:85:3035:-273.363,-25.5876,0	0/1:93:44,49:44:1584:49:1760:-130.688,0,-114.856	0/1:128:78,50:78:2800:50:1770:-121.051,0,-213.708	1/1:28:0,28:0:0:28:999:-90.2245,-8.42884,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:69:0,69:0:0:69:2453:-221.021,-20.7711,0	0/1:17:4,13:4:144:13:464:-36.98,0,-8.19611	1/1:124:0,124:0:0:124:4417:-397.703,-37.3277,0	0/1:28:14,14:14:504:14:496:-36.5454,0,-37.2693	1/1:132:0,131:0:0:131:4661:-419.293,-39.4349,0	1/1:141:0,141:0:0:141:5019:-451.857,-42.4452,0	0/1:79:41,38:41:1463:38:1356:-98.5591,0,-108.184	0/1:56:27,29:27:968:29:1029:-76.0643,0,-70.5797	0/1:9:1,8:1:36:8:275:-22.3742,0,-0.889005	1/1:82:0,82:0:0:82:2909:-262.046,-24.6845,0	1/1:83:0,83:0:0:83:2963:-266.903,-24.9855,0	1/1:188:0,188:0:0:188:6669:-600.287,-56.5936,0	1/1:91:0,91:0:0:91:3227:-290.652,-27.3937,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:64:32,32:32:1152:32:1147:-84.2739,0,-84.7242	1/1:119:0,119:0:0:119:4233:-381.15,-35.8226,0	0/1:52:22,30:22:788:30:1063:-80.3273,0,-55.5912	1/1:83:0,83:0:0:83:2941:-264.924,-24.9855,0	1/1:65:0,65:0:0:65:2297:-206.991,-19.567,0	1/1:45:0,45:0:0:45:1592:-143.569,-13.5464,0	0/1:122:55,67:55:1972:67:2397:-179.261,0,-141.029	0/1:58:41,17:41:1468:17:591:-36.0555,0,-114.956	1/1:79:0,79:0:0:79:2793:-251.418,-23.7814,0	1/1:84:0,84:0:0:84:2998:-270.051,-25.2865,0
chr04	3697384	.	A	G	53300.9	PASS	AB=0.560162;ABP=173.627;AC=45;AF=0.239362;AN=188;AO=3064;CIGAR=1X;DP=11233;DPB=11233;DPRA=1.15662;EPP=6621.7;EPPR=17726.6;GTI=3;LEN=1;MEANALT=1.03509;MQM=59.7412;MQMR=59.9767;NS=94;NUMALT=1;ODDS=0.386999;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109168;QR=292785;RO=8166;RPL=3060;RPP=6621.7;RPPR=17735.3;RPR=4;RUN=1;SAF=3064;SAP=6656.4;SAR=0;SRF=8165;SRP=17726.6;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:6,22:6:216:22:773:-61.4588,0,-11.3617	0/0:144:144,0:144:5149:0:0:0,-43.3483,-463.55	0/0:143:143,0:143:5140:0:0:0,-43.0473,-462.739	0/0:207:206,1:206:7375:1:36:0,-58.7149,-660.199	0/0:81:80,1:80:2864:1:36:0,-20.7852,-254.399	0/0:79:79,0:79:2836:0:0:0,-23.7814,-254.538	0/1:178:80,98:80:2880:98:3512:-262.592,0,-205.852	0/0:150:149,1:149:5352:1:36:0,-41.5562,-478.212	0/1:96:40,56:40:1423:56:2004:-151.717,0,-99.4678	0/0:95:94,1:94:3368:1:36:0,-24.9996,-299.548	0/0:123:123,0:123:4424:0:0:0,-37.0267,-398.329	0/0:126:126,0:126:4519:0:0:0,-37.9298,-406.876	0/1:83:45,38:45:1607:38:1350:-96.7837,0,-119.934	0/0:139:139,0:139:4980:0:0:0,-41.8432,-448.348	0/1:78:43,35:43:1544:35:1240:-88.4218,0,-115.773	0/1:86:40,46:40:1431:46:1648:-122.713,0,-103.198	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145	0/1:80:49,31:49:1760:31:1095:-74.7767,0,-134.601	0/1:70:36,34:36:1292:34:1192:-86.4952,0,-95.5117	0/1:287:108,179:108:3869:179:6419:-491.376,0,-262.007	0/1:207:119,88:119:4264:88:3119:-218.611,0,-321.625	0/1:194:37,157:37:1320:157:5599:-445.632,0,-60.7021	0/1:132:48,84:48:1724:84:2996:-229.941,0,-115.709	0/0:87:83,4:83:2984:4:144:0,-12.876,-255.478	0/1:74:48,26:48:1720:26:925:-61.2907,0,-132.809	0/1:361:170,190:170:6104:190:6777:-501.186,0,-440.728	0/1:212:120,92:120:4308:92:3304:-233.746,0,-324.077	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:349:160,189:160:5736:189:6765:-503.715,0,-411.296	0/1:174:67,107:67:2408:107:3819:-291.42,0,-164.597	0/0:160:160,0:160:5728:0:0:0,-48.1648,-515.637	0/1:18:6,12:6:216:12:423:-32.9842,0,-14.372	0/1:40:18,22:18:639:22:792:-59.5598,0,-45.797	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:19:8,11:8:284:11:388:-29.5378,0,-20.1838	0/0:290:290,0:290:10396:0:0:0,-87.2987,-935.558	0/0:186:186,0:186:6679:0:0:0,-55.9916,-601.155	0/0:132:132,0:132:4735:0:0:0,-39.736,-426.271	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:182:68,114:68:2432:114:4072:-311.877,0,-164.348	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.843	0/1:176:77,99:77:2768:99:3521:-264.104,0,-196.379	0/1:92:47,45:47:1688:45:1611:-117.582,0,-124.512	0/0:88:88,0:88:3168:0:0:0,-26.4906,-285.315	0/1:120:61,59:61:2188:59:2112:-154.225,0,-161.062	0/1:183:89,94:89:3200:94:3344:-245.913,0,-233.134	0/1:248:115,133:115:4117:133:4724:-350.65,0,-296.057	0/0:113:110,3:110:3948:3:108:0,-23.9412,-345.436	0/0:164:162,2:162:5816:2:72:0,-42.5322,-516.714	0/0:136:136,0:136:4880:0:0:0,-40.9401,-439.351	0/1:19:8,11:8:288:11:387:-29.2855,0,-20.5478	0/1:192:74,118:74:2651:118:4202:-320.544,0,-181.037	0/1:64:33,31:33:1180:31:1104:-80.3598,0,-87.2421	0/0:29:28,1:28:1004:1:25:0,-6.23073,-88.1767	0/0:184:183,1:183:6543:1:36:0,-51.7912,-585.351	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:149:73,76:73:2624:76:2698:-198.206,0,-191.553	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:188:188,0:188:6735:0:0:0,-56.5936,-606.219	0/0:179:178,1:178:6376:1:36:0,-50.2861,-570.331	0/1:51:7,43:7:252:43:1544:-123.948,0,-7.71448	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/1:238:82,156:82:2928:156:5547:-427.434,0,-191.93	0/1:137:27,110:27:968:110:3917:-311.375,0,-46.1963	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:111:111,0:111:3964:0:0:0,-33.4143,-356.949	0/1:24:11,13:11:396:13:464:-34.8719,0,-28.758	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/1:80:31,49:31:1112:49:1756:-134.228,0,-76.3056	0/0:198:196,2:196:7017:2:72:0,-52.7672,-624.751	0/0:173:173,0:173:6208:0:0:0,-52.0782,-558.808	0/1:126:58,68:58:2080:68:2422:-180.305,0,-149.537	0/1:100:43,57:43:1540:57:2048:-154.47,0,-108.79	0/1:20:8,12:8:288:12:432:-33.196,0,-20.2468	0/0:136:135,0:135:4852:0:0:0,-40.639,-436.472	0/0:144:143,1:143:5124:1:36:0,-39.75,-457.703	0/0:185:185,0:185:6632:0:0:0,-55.6905,-596.958	0/0:124:124,0:124:4425:0:0:0,-37.3277,-398.421	0/0:101:101,0:101:3623:0:0:0,-30.404,-326.274	0/1:124:67,57:67:2404:57:2024:-145.101,0,-179.289	0/0:183:183,0:183:6564:0:0:0,-55.0885,-590.84	0/1:67:36,31:36:1283:31:1099:-79.0495,0,-95.6036	0/0:117:117,0:117:4187:0:0:0,-35.2205,-377.011	0/0:111:111,0:111:3987:0:0:0,-33.4143,-359.015	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:153:83,70:83:2984:70:2469:-176.387,0,-222.734	0/1:100:35,65:35:1260:65:2250:-172.653,0,-83.6025	0/0:113:113,0:113:4045:0:0:0,-34.0164,-364.236	0/0:133:132,1:132:4723:1:36:0,-36.4387,-421.63
chr04	3697391	.	C	A	50908.7	PASS	AB=0.575082;ABP=255.721;AC=45;AF=0.239362;AN=188;AO=2984;CIGAR=1X;DP=10550;DPB=10550;DPRA=1.11192;EPP=6482.68;EPPR=16412.8;GTI=3;LEN=1;MEANALT=1.05769;MQM=59.7048;MQMR=59.9866;NS=94;NUMALT=1;ODDS=0.612346;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104948;QR=264228;RO=7561;RPL=2984;RPP=6482.68;RPPR=16421.5;RPR=0;RUN=1;SAF=2984;SAP=6482.68;SAR=0;SRF=7560;SRP=16412.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:6,19:6:192:19:680:-53.9988,0,-10.0677	0/0:132:129,3:129:4516:3:104:0,-30.0332,-396.908	0/0:139:139,0:139:4841:0:0:0,-41.8432,-435.846	0/0:184:184,0:184:6448:0:0:0,-55.3895,-580.417	0/0:76:75,1:75:2621:1:36:0,-19.28,-232.536	0/0:74:74,0:74:2574:0:0:0,-22.2762,-231.903	0/1:165:70,95:70:2431:95:3337:-250.874,0,-169.373	0/0:143:142,1:142:4963:1:36:0,-39.449,-443.229	0/1:87:33,54:33:1137:54:1919:-146.779,0,-76.4432	0/0:91:89,1:89:3075:1:32:0,-24.152,-273.649	0/0:112:111,0:111:3848:0:0:0,-33.4143,-346.163	0/0:118:118,0:118:4129:0:0:0,-35.5215,-371.799	0/1:82:44,38:44:1546:38:1342:-96.3645,0,-114.746	0/0:130:130,0:130:4550:0:0:0,-39.1339,-409.671	0/1:75:40,35:40:1398:35:1244:-89.6861,0,-103.536	0/1:85:39,46:39:1371:46:1632:-121.574,0,-98.1002	0/0:73:73,0:73:2520:0:0:0,-21.9752,-227.051	0/1:79:49,30:49:1711:30:1068:-72.6507,0,-130.49	0/1:69:35,34:35:1230:34:1187:-86.3381,0,-90.2314	0/1:274:98,176:98:3421:176:6252:-480.242,0,-225.625	0/1:197:111,86:111:3853:86:2971:-208.312,0,-287.665	0/1:192:33,159:33:1143:159:5597:-446.061,0,-45.3742	0/1:123:41,82:41:1443:82:2893:-223.209,0,-93.1384	0/0:79:76,3:76:2677:3:99:0,-14.5448,-231.937	0/1:68:43,25:43:1523:25:888:-59.7666,0,-116.892	0/1:345:156,189:156:5444:189:6599:-490.124,0,-386.24	0/1:198:105,93:105:3674:93:3269:-234.665,0,-271.261	0/0:51:51,0:51:1741:0:0:0,-15.3525,-156.969	0/1:320:145,175:145:5089:175:6180:-459.923,0,-361.831	0/1:165:61,104:61:2167:104:3650:-279.024,0,-145.626	0/0:144:144,0:144:5052:0:0:0,-43.3483,-454.832	0/1:15:6,9:6:203:9:301:-22.8983,0,-14.0857	0/1:39:17,22:17:612:22:788:-59.4999,0,-43.6733	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:19:7,12:7:244:12:428:-33.1392,0,-16.5799	0/0:277:277,0:277:9603:0:0:0,-83.3853,-864.255	0/0:170:170,0:170:5990:0:0:0,-51.1751,-539.181	0/0:124:124,0:124:4261:0:0:0,-37.3277,-383.678	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:172:64,108:64:2249:108:3765:-287.276,0,-150.896	0/0:41:41,0:41:1409:0:0:0,-12.3422,-127.101	0/1:171:69,102:69:2388:102:3583:-271.18,0,-163.699	0/1:94:46,48:46:1595:48:1691:-124.168,0,-115.542	0/0:83:83,0:83:2844:0:0:0,-24.9855,-256.202	0/1:108:53,55:53:1850:55:1952:-143.445,0,-134.267	0/1:174:81,93:81:2856:93:3260:-241.065,0,-204.899	0/1:236:107,129:107:3780:129:4537:-337.443,0,-269.358	0/0:105:105,0:105:3695:0:0:0,-31.6081,-332.755	0/0:152:152,0:152:5342:0:0:0,-45.7566,-480.921	0/0:130:130,0:130:4578:0:0:0,-39.1339,-412.19	0/1:18:7,11:7:248:11:383:-29.2239,0,-17.2457	0/1:182:70,112:70:2466:112:3951:-300.981,0,-167.401	0/1:61:31,30:31:1095:30:1064:-77.6639,0,-80.4963	0/0:27:27,0:27:930:0:0:0,-8.12781,-84.0025	0/0:166:165,0:165:5774:0:0:0,-49.6699,-519.382	0/0:74:74,0:74:2579:0:0:0,-22.2762,-232.36	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:16:4,12:4:144:12:428:-34.04,0,-8.49714	0/0:20:20,0:20:679:0:0:0,-6.0206,-61.4244	0/1:144:71,73:71:2458:73:2583:-189.367,0,-178.126	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:163:163,0:163:5711:0:0:0,-49.0679,-514.118	0/0:163:162,1:162:5659:1:36:0,-45.4696,-505.841	0/1:51:6,45:6:197:45:1573:-126.497,0,-2.6988	0/0:92:92,0:92:3253:0:0:0,-27.6948,-292.992	0/1:223:75,148:75:2606:148:5197:-400.577,0,-167.659	0/1:137:27,110:27:937:110:3857:-305.985,0,-43.3998	0/0:55:55,0:55:1917:0:0:0,-16.5566,-172.805	0/0:90:90,0:90:3178:0:0:0,-27.0927,-286.246	0/0:97:97,0:97:3355:0:0:0,-29.1999,-302.171	0/1:24:11,13:11:396:13:441:-32.7885,0,-28.758	0/0:116:116,0:116:4041:0:0:0,-34.9195,-363.882	0/1:78:31,47:31:1100:47:1635:-123.943,0,-75.8299	0/0:179:179,0:179:6334:0:0:0,-53.8844,-570.154	0/0:162:162,0:162:5655:0:0:0,-48.7669,-509.059	0/1:116:53,63:53:1866:63:2199:-163.257,0,-133.298	0/1:94:40,54:40:1419:54:1916:-144.272,0,-99.7098	0/1:18:7,11:7:239:11:383:-29.3801,0,-16.4242	0/0:129:129,0:129:4549:0:0:0,-38.8329,-409.582	0/0:133:132,1:132:4637:1:32:0,-36.8377,-414.299	0/0:173:173,0:173:6113:0:0:0,-52.0782,-550.276	0/0:112:112,0:112:3896:0:0:0,-33.7154,-350.84	0/0:99:99,0:99:3463:0:0:0,-29.802,-311.886	0/1:114:58,56:58:2009:56:1962:-142.535,0,-146.762	0/0:170:170,0:170:5953:0:0:0,-51.1751,-535.89	0/1:63:31,32:31:1076:32:1132:-83.2195,0,-78.1805	0/0:110:110,0:110:3828:0:0:0,-33.1133,-344.72	0/0:101:101,0:101:3509:0:0:0,-30.404,-316.022	0/0:66:66,0:66:2314:0:0:0,-19.868,-208.521	0/1:151:80,70:80:2768:70:2437:-174.201,0,-203.996	0/1:94:30,63:30:1022:63:2243:-173.767,0,-63.931	0/0:106:106,0:106:3703:0:0:0,-31.9092,-333.477	0/0:129:128,1:128:4454:1:32:0,-35.6336,-397.839
chr04	3802132	.	TGGTC	AGGTC,AGGTA	260946	PASS	AB=0.472552,0.519606;ABP=32.2155,17.9109;AC=143,45;AF=0.760638,0.239362;AN=188;AO=7170,2342;CIGAR=1X4M,1X3M1X;DP=9588;DPB=9588.6;DPRA=0,1.09326;EPP=128.615,3.84477;EPPR=6.91895;GTI=0;LEN=1,5;MEANALT=2.29787,2.70175;MQM=59.9863,59.9569;MQMR=60;NS=94;NUMALT=2;ODDS=2.63812;PAIRED=0,0;PAIREDR=0;PAO=1,2;PQA=36,72;PQR=0;PRO=0;QA=255252,81235;QR=132;RO=5;RPL=65,9;RPP=15013,5010.73;RPPR=13.8677;RPR=7105,2333;RUN=1,1;SAF=3970,1195;SAP=182.573,5.14654;SAR=3200,1147;SRF=1;SRP=6.91895;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:28:0,12,16:0:0:12,16:409,556:-78.7304,-45.5509,-41.9385,-33.5231,0,-28.7066	1/1:122:1,116,4:1:22:116,4:4163,142:-372.555,-33.2596,0,-361.286,-23.2693,-361.759	1/1:164:0,162,0:0:0:162,0:5730,0:-515.582,-48.7669,0,-515.582,-48.7669,-515.582	1/1:163:0,161,0:0:0:161,0:5752,0:-517.519,-48.4658,0,-517.519,-48.4658,-517.519	1/1:46:0,45,0:0:0:45,0:1616,0:-145.458,-13.5464,0,-145.458,-13.5464,-145.458	1/1:39:0,39,0:0:0:39,0:1376,0:-124.136,-11.7402,0,-124.136,-11.7402,-124.136	1/2:84:0,39,44:0:0:39,44:1396,1525:-237.781,-123.935,-112.195,-113.839,0,-100.594	1/1:199:0,197,1:0:0:197,1:7025,29:-631.986,-59.3029,0,-629.679,-57.0299,-629.378	1/2:108:0,51,56:0:0:51,56:1824,1949:-307.158,-158.423,-143.07,-148.729,0,-131.871	1/1:89:0,87,0:0:0:87,0:3107,0:-279.517,-26.1896,0,-279.517,-26.1896,-279.517	1/1:91:0,90,1:0:0:90,1:3220,35:-289.673,-27.0927,0,-286.825,-23.8951,-286.524	1/1:175:0,172,1:0:0:172,1:6068,36:-545.929,-51.7772,0,-542.991,-48.8081,-542.69	1/2:177:0,82,95:0:0:82,95:2948,3318:-510.76,-270.247,-245.562,-240.869,0,-212.271	1/1:129:0,128,0:0:0:128,0:4542,0:-408.589,-38.5318,0,-408.589,-38.5318,-408.589	1/2:177:0,98,79:0:0:98,79:3476,2746:-506.802,-223.602,-194.101,-283.551,0,-259.769	1/2:150:0,75,75:0:0:75,75:2662,2577:-426.5,-209.603,-187.025,-217.246,0,-194.669	1/1:147:0,146,0:0:0:146,0:5224,0:-470.037,-43.9504,0,-470.037,-43.9504,-470.037	1/2:122:0,58,63:0:0:58,63:2080,2216:-350.145,-180.489,-163.029,-169.759,0,-150.794	1/2:72:0,35,37:0:0:35,37:1256,1271:-206.007,-103.549,-93.0131,-102.809,0,-91.6711	1/2:156:0,74,82:0:0:74,82:2633,2830:-444.848,-230.258,-207.982,-214.94,0,-190.255	1/2:170:0,91,78:0:0:91,78:3249,2700:-484.333,-219.448,-192.054,-264.916,0,-241.435	1/2:40:0,10,28:0:0:10,28:352,972:-107.699,-79.0415,-76.0312,-28.6832,0,-20.2543	1/2:89:0,38,51:0:0:38,51:1356,1785:-256.121,-145.574,-134.135,-110.901,0,-95.5488	1/1:46:0,44,2:0:0:44,2:1572,72:-141.412,-13.2453,0,-135.537,-7.01066,-134.935	1/2:87:0,40,46:0:0:40,46:1401,1550:-239.575,-125.578,-113.537,-113.982,0,-100.134	1/2:224:0,104,116:0:0:104,116:3671,4032:-626.752,-327.817,-296.51,-298.945,0,-264.025	1/2:214:0,118,95:0:0:118,95:4189,3316:-611.026,-269.707,-234.186,-341.311,0,-312.713	1/1:79:0,79,0:0:0:79,0:2808,0:-252.953,-23.7814,0,-252.953,-23.7814,-252.953	1/2:167:0,73,93:0:0:73,93:2624,3234:-477.061,-262.983,-241.008,-214.121,0,-186.125	1/2:69:0,36,32:0:0:36,32:1285,1140:-197.774,-93.0134,-82.1764,-104.853,0,-95.2197	1/1:87:1,84,1:1:21:84,1:2998,36:-267.851,-23.7475,0,-265.215,-22.3241,-266.501	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:11:0,4,7:0:0:4,7:144,237:-31.3096,-19.5522,-18.348,-12.1095,0,-10.0023	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/2:10:0,5,5:0:0:5,5:180,176:-29.3712,-14.6802,-13.175,-15.0469,0,-13.5418	1/1:392:0,385,0:0:0:385,0:13714,0:-1233.69,-115.897,0,-1233.69,-115.897,-1233.69	1/1:59:0,59,0:0:0:59,0:2099,0:-189.179,-17.7608,0,-189.179,-17.7608,-189.179	1/2:105:0,51,54:0:0:51,54:1813,1877:-300.698,-152.952,-137.599,-148.098,0,-131.842	1/2:3:0,2,1:0:0:2,1:72,31:-8.70651,-2.79842,-2.19636,-6.23466,0,-5.93363	1/2:98:0,48,50:0:0:48,50:1716,1718:-279.777,-139.851,-125.402,-140.276,0,-125.225	1/1:63:0,62,0:0:0:62,0:2224,0:-200.064,-18.6639,0,-200.064,-18.6639,-200.064	1/2:85:0,36,49:0:0:36,49:1281,1676:-240.778,-136.373,-125.536,-104.754,0,-90.0037	1/2:152:0,80,69:0:0:80,69:2853,2395:-427.362,-194.787,-170.705,-232.674,0,-211.902	1/1:130:0,130,0:0:0:130,0:4618,0:-415.78,-39.1339,0,-415.78,-39.1339,-415.78	1/2:67:0,30,36:0:0:30,36:1080,1225:-187.482,-99.3513,-90.3204,-88.1225,0,-77.2854	1/2:88:0,37,50:0:0:37,50:1311,1723:-246.842,-140.039,-128.901,-106.89,0,-91.8388	1/2:124:0,44,80:0:0:44,80:1571,2756:-352.284,-224.201,-210.956,-128.436,0,-104.353	1/1:66:0,66,0:0:0:66,0:2355,0:-212.208,-19.868,0,-212.208,-19.868,-212.208	1/1:94:0,94,0:0:0:94,0:3364,0:-302.976,-28.2968,0,-302.976,-28.2968,-302.976	1/1:58:0,58,0:0:0:58,0:2052,0:-184.949,-17.4597,0,-184.949,-17.4597,-184.949	1/2:7:0,1,5:0:0:1,5:36,172:-17.0149,-14.0723,-13.7712,-3.00734,0,-1.50219	1/2:98:1,42,55:1:36:42,55:1493,1931:-275.576,-154.211,-144.506,-118.722,0,-105.103	1/2:36:0,21,15:0:0:21,15:752,526:-104.486,-43.1555,-36.8338,-61.6846,0,-57.1692	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:107:0,106,0:0:0:106,0:3784,0:-340.456,-31.9092,0,-340.456,-31.9092,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chr04	3802165	.	C	T	195985	PASS	AB=0.479955;ABP=18.4191;AC=143;AF=0.760638;AN=188;AO=7249;CIGAR=1X;DP=9565;DPB=9565;DPRA=0;EPP=111.931;EPPR=3.42432;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9748;MQMR=59.9663;NS=94;NUMALT=1;ODDS=3.76396;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257947;QR=82224;RO=2313;RPL=7240;RPP=15665.9;RPPR=5008.27;RPR=9;RUN=1;SAF=3917;SAP=105.525;SAR=3332;SRF=1165;SRP=3.28162;SRR=1148;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:16,12:16:572:12:423:-29.9762,0,-43.3846	1/1:122:4,118:4:144:118:4224:-367.027,-23.412,0	1/1:162:0,162:0:0:162:5757:-518.246,-48.7669,0	1/1:162:0,162:0:0:162:5765:-518.967,-48.7669,0	1/1:45:0,45:0:0:45:1594:-143.749,-13.5464,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:85:43,41:43:1526:41:1458:-105.908,0,-112.024	1/1:201:0,201:0:0:201:7150:-643.56,-60.507,0	0/1:106:55,51:55:1944:51:1784:-128.931,0,-143.194	1/1:90:0,90:0:0:90:3172:-285.701,-27.0927,0	1/1:93:0,93:0:0:93:3314:-298.478,-27.9958,0	1/1:182:1,181:1:36:181:6460:-577.874,-51.1892,0	0/1:175:92,83:92:3266:83:2942:-212.332,0,-241.478	1/1:126:0,126:0:0:126:4495:-404.72,-37.9298,0	0/1:174:78,96:78:2777:96:3424:-255.995,0,-197.791	0/1:150:75,75:75:2671:75:2655:-194.04,0,-195.477	1/1:148:0,148:0:0:148:5244:-471.472,-44.5524,0	0/1:120:62,58:62:2208:58:2060:-149.548,0,-162.862	0/1:70:35,35:35:1248:35:1260:-92.6334,0,-91.5528	0/1:158:83,75:83:2940:75:2653:-191.452,0,-217.271	0/1:169:76,93:76:2708:93:3310:-247.246,0,-193.091	0/1:41:31,10:31:1097:10:336:-18.221,0,-86.6958	0/1:89:50,39:50:1774:39:1394:-98.9664,0,-133.149	1/1:45:2,43:2:72:43:1544:-132.416,-6.70963,0	0/1:86:44,42:44:1530:42:1504:-109.765,0,-112.099	0/1:218:113,105:113:4010:105:3746:-271.715,0,-295.467	0/1:213:92,121:92:3280:121:4316:-324.499,0,-231.299	1/1:77:0,77:0:0:77:2748:-247.516,-23.1793,0	0/1:165:92,73:92:3292:73:2607:-185.208,0,-246.83	0/1:67:32,35:32:1152:35:1244:-92.0951,0,-83.8211	1/1:87:1,86:1:36:86:3048:-270.951,-22.5913,0	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:11:0,11:0:0:11:382:-34.7115,-3.31133,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:392:0,392:0:0:392:13979:-1257.88,-118.004,0	1/1:59:0,59:0:0:59:2092:-188.548,-17.7608,0	0/1:104:54,50:54:1921:50:1792:-130.255,0,-141.858	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:99:48,51:48:1712:51:1815:-133.829,0,-124.564	1/1:63:0,63:0:0:63:2243:-202.133,-18.9649,0	0/1:84:48,36:48:1693:36:1288:-90.9371,0,-127.368	0/1:153:69,84:69:2463:84:2976:-222.015,0,-175.866	1/1:129:0,129:0:0:129:4563:-410.706,-38.8329,0	0/1:66:37,29:37:1298:29:1034:-73.5057,0,-97.2517	0/1:85:48,36:48:1701:36:1288:-90.5773,0,-127.728	0/1:124:79,45:79:2836:45:1575:-104.709,0,-218.15	1/1:66:0,66:0:0:66:2355:-212.208,-19.868,0	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	1/1:60:0,60:0:0:60:2135:-192.418,-18.0618,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:97:55,42:55:1952:42:1508:-106.815,0,-146.753	0/1:36:15,21:15:540:21:747:-56.7172,0,-38.0995	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:111:0,111:0:0:111:3959:-356.502,-33.4143,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:85:0,85:0:0:85:3031:-273.019,-25.5876,0	0/1:169:65,104:65:2328:104:3702:-282.503,0,-158.674	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:88:0,88:0:0:88:3099:-279.138,-26.4906,0	1/1:118:7,111:7:252:111:3931:-330.953,-12.4926,0	0/1:73:34,39:34:1216:39:1404:-104.684,0,-87.7714	1/1:63:0,63:0:0:63:2233:-201.233,-18.9649,0	0/1:152:89,63:89:3157:63:2229:-155.032,0,-238.596	0/1:109:72,37:72:2526:37:1320:-86.2897,0,-194.778	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:70:1,69:1:36:69:2432:-215.535,-17.4738,0	1/1:180:1,179:1:36:179:6355:-568.447,-50.5871,0	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	1/1:74:0,74:0:0:74:2632:-237.128,-22.2762,0	0/1:79:47,32:47:1664:32:1113:-76.6935,0,-126.263	1/1:170:0,170:0:0:170:6037:-543.309,-51.1751,0	1/1:98:0,98:0:0:98:3485:-313.861,-29.5009,0	0/1:125:72,52:72:2572:52:1851:-129.219,0,-194.074	0/1:109:44,65:44:1572:65:2303:-174.718,0,-108.959	0/1:8:5,3:5:172:3:108:-7.66693,0,-13.4097	1/1:79:0,79:0:0:79:2806:-252.78,-23.7814,0	1/1:104:0,104:0:0:104:3710:-334.102,-31.3071,0	1/1:169:0,169:0:0:169:5996:-539.75,-50.8741,0	1/1:179:0,179:0:0:179:6360:-572.491,-53.8844,0	1/1:140:1,139:1:36:139:4957:-442.681,-38.5459,0	0/1:162:74,88:74:2620:88:3148:-234.779,0,-187.28	1/1:267:2,265:2:72:265:9428:-841.649,-73.5383,0	0/1:47:29,18:29:1040:18:648:-44.5035,0,-79.766	0/1:121:65,56:65:2302:56:1986:-142.588,0,-171.016	1/1:144:0,144:0:0:144:5102:-458.958,-43.3483,0	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	0/1:123:63,60:63:2230:60:2143:-156.11,0,-163.934	0/1:114:79,35:79:2806:35:1243:-77.8564,0,-218.462	1/1:77:0,77:0:0:77:2749:-247.651,-23.1793,0	1/1:296:0,296:0:0:296:10603:-954.18,-89.1049,0
chr04	3823111	.	C	A,T	122292	PASS	AB=0.652801,0.346787;ABP=495.405,498.063;AC=143,45;AF=0.760638,0.239362;AN=188;AO=4803,847;CIGAR=1X,1X;DP=5655;DPB=5655;DPRA=0,1.00002;EPP=10415.2,1824.92;EPPR=5.18177;GTI=5;LEN=1,1;MEANALT=1.56383,2;MQM=54.6685,59.9929;MQMR=60;NS=94;NUMALT=2;ODDS=1.86782;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=171601,30329;QR=36;RO=1;RPL=4801,844;RPP=10415.2,1816.28;RPPR=5.18177;RPR=2,3;RUN=1,1;SAF=4803,846;SAP=10432.6,1833.57;SAR=0,1;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,21,20:0:0:21,20:752,720:-120.273,-59.1082,-52.7865,-61.5237,0,-55.5031	1/1:65:0,65,0:0:0:65,0:2325,0:-209.032,-19.567,0,-209.032,-19.567,-209.032	1/1:127:0,127,0:0:0:127,0:4521,0:-406.199,-38.2308,0,-406.199,-38.2308,-406.199	1/1:113:0,113,0:0:0:113,0:4048,0:-363.755,-34.0164,0,-363.755,-34.0164,-363.755	1/1:49:0,49,0:0:0:49,0:1757,0:-157.391,-14.7505,0,-157.391,-14.7505,-157.391	1/1:28:0,28,0:0:0:28,0:1004,0:-90.3786,-8.42884,0,-90.3786,-8.42884,-90.3786	1/2:36:0,27,9:0:0:27,9:968,324:-105.518,-26.7966,-18.6688,-79.0804,0,-76.3711	1/1:61:0,61,0:0:0:61,0:2184,0:-194.957,-18.3628,0,-194.957,-18.3628,-194.957	1/2:76:0,54,22:0:0:54,22:1924,788:-220.919,-64.6221,-48.3665,-156.654,0,-150.031	1/1:34:0,34,0:0:0:34,0:1216,0:-109.502,-10.235,0,-109.502,-10.235,-109.502	1/1:41:0,41,0:0:0:41,0:1476,0:-133.042,-12.3422,0,-133.042,-12.3422,-133.042	1/1:80:0,80,0:0:0:80,0:2878,0:-258.713,-24.0824,0,-258.713,-24.0824,-258.713	1/2:40:0,23,17:0:0:23,17:824,612:-117.257,-50.2959,-43.3722,-67.3197,0,-62.2022	1/1:56:0,56,0:0:0:56,0:2004,0:-178.89,-16.8577,0,-178.89,-16.8577,-178.89	1/2:51:0,40,11:0:0:40,11:1436,396:-149.683,-32.6714,-20.6302,-117.371,0,-114.059	1/2:39:0,27,12:0:0:27,12:968,428:-114.008,-35.2464,-27.1186,-79.1184,0,-75.5061	1/1:29:0,29,0:0:0:29,0:1036,0:-93.2471,-8.72987,0,-93.2471,-8.72987,-93.2471	1/2:15:0,7,8:0:0:7,8:252,288:-44.3887,-23.8592,-21.752,-20.8891,0,-18.4809	1/2:19:0,12,7:0:0:12,7:413,244:-53.6143,-20.1922,-16.5799,-33.7685,0,-31.6613	1/2:114:0,72,42:0:0:72,42:2572,1512:-331.729,-123.731,-102.057,-208.355,0,-195.712	1/2:90:0,59,31:0:0:59,31:2112,1108:-262.491,-90.6991,-72.9383,-172.15,0,-162.818	1/2:62:0,32,30:0:0:32,30:1136,1076:-180.22,-88.122,-78.489,-92.4542,0,-83.4233	1/2:46:0,32,14:0:0:32,14:1136,504:-133.618,-41.4837,-31.8507,-92.4924,0,-88.278	1/1:52:0,52,0:0:0:52,0:1834,0:-165.107,-15.6536,0,-165.107,-15.6536,-165.107	1/2:56:0,32,24:0:0:32,24:1136,860:-162.795,-70.4971,-60.8642,-92.6543,0,-85.4296	1/2:116:0,69,47:0:0:69,47:2469,1679:-338.326,-137.248,-116.477,-201.435,0,-187.287	1/2:148:0,104,44:0:0:104,44:3713,1578:-430.934,-129.066,-97.7592,-302.226,0,-288.98	1/1:19:0,19,0:0:0:19,0:684,0:-61.8026,-5.71957,0,-61.8026,-5.71957,-61.8026	1/2:144:0,95,49:0:0:95,49:3404,1756:-420.953,-143.574,-114.976,-277.738,0,-262.987	1/2:54:0,29,25:0:0:29,25:1044,881:-157.084,-72.0801,-63.3502,-85.3597,0,-77.834	1/1:78:0,78,0:0:0:78,0:2776,0:-249.805,-23.4803,0,-249.805,-23.4803,-249.805	1/1:16:0,15,1:0:0:15,1:536,36:-48.0969,-4.51545,0,-45.1592,-1.21821,-44.8582	1/2:28:0,17,11:0:0:17,11:612,392:-82.1686,-32.3087,-27.1912,-50.2173,0,-46.906	1/1:6:0,6,0:0:0:6,0:211,0:-19.2995,-1.80618,0,-19.2995,-1.80618,-19.2995	1/1:9:0,9,0:0:0:9,0:324,0:-29.3372,-2.70927,0,-29.3372,-2.70927,-29.3372	1/2:22:0,15,7:0:0:15,7:540,252:-64.9207,-20.9217,-16.4063,-44.3586,0,-42.2514	1/1:131:0,131,0:0:0:131,0:4690,0:-421.905,-39.4349,0,-421.905,-39.4349,-421.905	1/1:113:0,113,0:0:0:113,0:4023,0:-361.189,-34.0164,0,-361.189,-34.0164,-361.189	1/2:33:0,26,7:0:0:26,7:916,252:-95.3203,-20.9217,-13.095,-74.7566,0,-72.6494	1/2:10:0,8,2:0:0:8,2:288,72:-29.6145,-6.23466,-3.82642,-23.7394,0,-23.1373	1/2:70:0,49,21:0:0:49,21:1752,756:-204.63,-62.0456,-47.2951,-142.943,0,-136.621	1/1:28:0,28,0:0:0:28,0:1000,0:-90.1941,-8.42884,0,-90.1941,-8.42884,-90.1941	1/2:81:0,48,33:0:0:48,33:1701,1184:-235.155,-96.9343,-82.4849,-138.577,0,-128.643	1/2:19:0,13,6:0:0:13,6:453,216:-54.702,-17.9843,-14.0709,-37.0736,0,-35.2674	1/1:48:0,48,0:0:0:48,0:1703,0:-152.969,-14.4494,0,-152.969,-14.4494,-152.969	1/2:112:0,69,43:0:0:69,43:2463,1527:-325.062,-124.778,-104.007,-200.639,0,-187.695	1/2:87:0,59,28:0:0:59,28:2116,1008:-254.444,-82.6075,-64.8467,-172.195,0,-163.766	1/2:113:0,82,31:0:0:82,31:2948,1101:-330.286,-90.0664,-65.382,-240.576,0,-231.244	1/1:87:0,87,0:0:0:87,0:3100,0:-278.956,-26.1896,0,-278.956,-26.1896,-278.956	1/1:96:0,96,0:0:0:96,0:3440,0:-309.418,-28.8989,0,-309.418,-28.8989,-309.418	1/1:72:0,72,0:0:0:72,0:2553,0:-229.777,-21.6742,0,-229.777,-21.6742,-229.777	1/2:7:0,6,1:0:0:6,1:216,36:-20.8225,-3.29724,-1.49106,-17.8848,0,-17.5838	1/2:76:1,43,32:1:36:43,32:1548,1144:-216.023,-90.3388,-80.332,-123.046,0,-116.351	1/2:18:0,14,4:0:0:14,4:500,144:-52.8599,-12.1095,-7.89508,-41.1095,0,-39.9054	1/1:13:0,13,0:0:0:13,0:464,0:-42.0447,-3.91339,0,-42.0447,-3.91339,-42.0447	1/1:122:0,120,0:0:0:120,0:4296,0:-385.477,-36.1236,0,-385.477,-36.1236,-385.477	1/1:31:0,31,0:0:0:31,0:1100,0:-99.1593,-9.33193,0,-99.1593,-9.33193,-99.1593	1/1:5:0,5,0:0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chr04	3823119	.	A	T	102714	PASS	AB=0.651515;ABP=489.947;AC=143;AF=0.760638;AN=188;AO=4804;CIGAR=1X;DP=5664;DPB=5664;DPRA=0;EPP=10417.4;EPPR=1859.62;GTI=5;LEN=1;MEANALT=1.05319;MQM=54.6588;MQMR=59.9614;NS=94;NUMALT=1;ODDS=1.71865;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171814;QR=30576;RO=855;RPL=4802;RPP=10417.4;RPPR=1850.94;RPR=2;RUN=1;SAF=4804;SAP=10434.8;SAR=0;SRF=854;SRP=1850.94;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:21,22:21:748:22:792:-58.491,0,-54.701	1/1:66:0,66:0:0:66:2350:-211.355,-19.868,0	1/1:129:0,129:0:0:129:4617:-414.841,-38.8329,0	1/1:112:0,112:0:0:112:3990:-358.594,-33.7154,0	1/1:50:0,50:0:0:50:1788:-160.083,-15.0515,0	1/1:28:0,28:0:0:28:1008:-90.7342,-8.42884,0	0/1:37:11,26:11:381:26:936:-73.1923,0,-23.4825	1/1:62:0,62:0:0:62:2224:-198.573,-18.6639,0	0/1:79:22,57:22:792:57:2044:-160.094,0,-47.1952	1/1:34:0,34:0:0:34:1220:-109.909,-10.235,0	1/1:39:0,39:0:0:39:1400:-126.212,-11.7402,0	1/1:79:0,79:0:0:79:2831:-254.48,-23.7814,0	0/1:40:17,23:17:608:23:828:-62.563,0,-43.0108	1/1:52:0,51:0:0:51:1802:-161.321,-15.3525,0	0/1:53:13,40:13:464:40:1440:-113.816,0,-26.1429	0/1:38:12,26:12:432:26:932:-72.5732,0,-27.7821	1/1:28:0,28:0:0:28:993:-89.3792,-8.42884,0	0/1:14:8,6:8:288:6:216:-15.548,0,-22.053	0/1:19:7,12:7:248:12:432:-33.307,0,-16.9446	0/1:110:40,70:40:1440:70:2492:-189.722,0,-96.7844	0/1:92:32,60:32:1152:60:2152:-165.663,0,-76.2954	0/1:61:30,31:30:1080:31:1112:-81.566,0,-79.1504	0/1:46:14,32:14:496:32:1152:-89.7136,0,-31.1269	1/1:51:0,51:0:0:51:1817:-163.575,-15.3525,0	0/1:58:25,33:25:896:33:1176:-88.419,0,-63.5006	0/1:119:47,72:47:1677:72:2577:-196.091,0,-115.393	0/1:147:43,104:43:1548:104:3731:-290.896,0,-95.3617	1/1:19:0,19:0:0:19:684:-61.8026,-5.71957,0	0/1:143:46,96:46:1641:96:3418:-264.524,0,-104.871	0/1:53:24,29:24:864:29:1040:-77.7773,0,-62.128	1/1:79:1,78:1:36:78:2728:-241.774,-20.1831,0	1/1:16:1,15:1:36:15:540:-45.2171,-1.21821,0	0/1:28:11,17:11:381:17:612:-46.906,0,-26.1918	1/1:6:0,6:0:0:6:216:-19.7262,-1.80618,0	1/1:8:0,8:0:0:8:288:-26.1031,-2.40824,0	0/1:23:8,15:8:288:15:540:-41.9504,0,-19.3437	1/1:132:0,131:0:0:131:4684:-420.982,-39.4349,0	1/1:112:0,112:0:0:112:4009:-359.877,-33.7154,0	0/1:33:7,26:7:252:26:928:-73.7216,0,-13.095	0/1:10:2,8:2:72:8:288:-23.1373,0,-3.82642	0/1:67:20,47:20:705:47:1658:-129.132,0,-43.6038	1/1:27:0,27:0:0:27:972:-87.6757,-8.12781,0	0/1:81:33,48:33:1165:48:1724:-130.705,0,-80.7716	0/1:18:6,12:6:216:12:432:-33.6899,0,-14.372	1/1:48:0,48:0:0:48:1712:-152.79,-14.4494,0	0/1:110:44,66:44:1576:66:2352:-178.579,0,-109.018	0/1:88:27,61:27:968:61:2177:-168.974,0,-60.9467	0/1:115:32,83:32:1144:83:2959:-231.644,0,-68.6511	1/1:87:0,86:0:0:86:3073:-276.199,-25.8886,0	1/1:96:0,96:0:0:96:3448:-310.134,-28.8989,0	1/1:72:0,72:0:0:72:2562:-230.547,-21.6742,0	0/1:7:1,6:1:36:6:216:-17.5838,0,-1.49106	0/1:78:34,44:34:1224:44:1580:-118.686,0,-86.9867	0/1:19:4,15:4:144:15:536:-42.8421,0,-7.59405	1/1:13:0,13:0:0:13:468:-42.4041,-3.91339,0	1/1:123:0,123:0:0:123:4409:-395.984,-37.0267,0	1/1:31:0,31:0:0:31:1112:-100.236,-9.33193,0	1/1:5:0,5:0:0:5:180:-16.546,-1.50515,0	0/1:11:1,10:1:36:10:356:-29.054,0,-0.286945	1/1:80:0,80:0:0:80:2880:-258.419,-24.0824,0	0/1:67:27,40:27:968:40:1428:-108.374,0,-67.2684	1/1:14:0,14:0:0:14:500:-45.2203,-4.21442,0	1/1:120:1,119:1:36:119:4261:-379.684,-32.5253,0	1/1:130:1,129:1:36:129:4613:-410.63,-35.5356,0	0/1:26:7,19:7:252:19:680:-53.5688,0,-15.2022	1/1:47:0,47:0:0:47:1678:-150.79,-14.1484,0	0/1:83:24,59:24:864:59:2109:-164.862,0,-53.0971	0/1:56:23,33:23:824:33:1188:-90.2073,0,-57.6256	1/1:32:0,32:0:0:32:1148:-103.43,-9.63296,0	1/1:55:0,55:0:0:55:1980:-178.096,-16.5567,0	1/1:40:0,40:0:0:40:1436:-129.487,-12.0412,0	0/1:26:10,16:10:356:16:576:-44.277,0,-24.5545	1/1:135:0,135:0:0:135:4823:-433.574,-40.6391,0	0/1:26:8,18:8:258:18:648:-50.681,0,-15.7062	1/1:150:0,150:0:0:150:5343:-480.135,-45.1545,0	1/1:92:0,92:0:0:92:3300:-296.034,-27.6948,0	0/1:71:28,43:28:1004:43:1548:-117.892,0,-69.3027	0/1:57:21,36:21:756:36:1284:-98.5436,0,-51.2085	0/1:16:4,12:4:144:12:432:-34.336,0,-8.49714	1/1:63:0,63:0:0:63:2256:-202.855,-18.9649,0	1/1:84:0,84:0:0:84:3009:-270.509,-25.2865,0	1/1:165:1,164:1:36:164:5855:-522.549,-46.0717,0	1/1:26:0,26:0:0:26:927:-83.4203,-7.82678,0	1/1:69:0,69:0:0:69:2457:-221.038,-20.7711,0	0/1:27:4,23:4:144:23:828:-66.6601,0,-5.18581	1/1:74:0,73:0:0:73:2601:-233.547,-21.9752,0	0/1:8:4,4:4:144:4:144:-10.8865,0,-10.9054	0/1:41:15,26:15:540:26:928:-71.3418,0,-36.5943	1/1:56:0,56:0:0:56:2012:-180.782,-16.8577,0	1/1:38:0,38:0:0:38:1356:-121.967,-11.4391,0	0/1:72:21,51:21:756:51:1817:-141.907,0,-46.6931	0/1:26:12,14:12:424:14:504:-37.8246,0,-30.6696	1/1:79:0,79:0:0:79:2831:-253.238,-23.7814,0	1/1:69:0,69:0:0:69:2481:-223.207,-20.7711,0
chr04	3825285	.	A	G	18218.1	PASS	AB=0.554748;ABP=53.1795;AC=47;AF=0.25;AN=188;AO=1075;CIGAR=1X;DP=4182;DPB=4182;DPRA=1.20001;EPP=2337.34;EPPR=6732.41;GTI=1;LEN=1;MEANALT=1;MQM=59.96;MQMR=59.9981;NS=94;NUMALT=1;ODDS=0.45018;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38202;QR=109610;RO=3103;RPL=1075;RPP=2337.34;RPPR=6732.41;RPR=0;RUN=1;SAF=1075;SAP=2337.34;SAR=0;SRF=3103;SRP=6741.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:106:106,0:106:3758:0:0:0,-31.9092,-338.415	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:19:6,13:6:197:13:454:-35.4718,0,-12.3318	0/0:42:42,0:42:1474:0:0:0,-12.6433,-132.95	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:111:56,55:56:1948:55:1934:-140.92,0,-142.18	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/1:32:15,17:15:536:17:612:-45.7805,0,-38.9419	0/1:21:13,8:13:445:8:279:-19.1259,0,-34.0537	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:20:11,9:11:377:9:320:-23.1218,0,-28.2373	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:53:24,29:24:852:29:1030:-77.0584,0,-61.0458	0/1:99:45,54:45:1608:54:1901:-141.562,0,-115.208	0/1:68:22,46:22:784:46:1652:-128.498,0,-50.4139	0/1:28:9,19:9:324:19:680:-53.1003,0,-21.077	0/1:21:17,4:17:608:4:144:-6.99199,0,-48.7304	0/1:28:11,17:11:392:17:580:-44.0905,0,-27.1912	0/1:161:70,91:70:2493:91:3223:-241.827,0,-176.156	0/1:120:56,64:56:1966:64:2275:-168.888,0,-141.088	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:118:43,75:43:1532:75:2678:-205.743,0,-102.652	0/1:41:15,26:15:536:26:932:-71.8566,0,-36.2326	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:95:95,0:95:3370:0:0:0,-28.5978,-303.515	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:47:27,20:27:945:20:720:-50.9804,0,-71.2138	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:46:20,26:20:716:26:920:-69.2697,0,-50.9203	0/1:24:9,15:9:324:15:532:-40.9884,0,-22.2811	0/0:52:52,0:52:1821:0:0:0,-15.6536,-164.169	0/1:26:10,16:10:360:16:563:-43.1724,0,-24.9175	0/1:38:13,25:13:445:25:900:-69.8819,0,-28.9362	0/1:148:69,79:69:2446:79:2832:-210.566,0,-175.84	0/0:42:42,0:42:1452:0:0:0,-12.6433,-130.966	0/0:94:94,0:94:3349:0:0:0,-28.2968,-301.626	0/0:51:50,0:50:1784:0:0:0,-15.0515,-160.522	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:36:20,16:20:697:16:571:-40.886,0,-52.2136	0/1:20:4,16:4:144:16:564:-45.0684,0,-7.29302	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/0:100:100,0:100:3462:0:0:0,-30.103,-311.791	0/0:18:17,0:17:597:0:0:0,-5.11751,-53.6968	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:14:6,8:6:201:8:280:-21.3249,0,-14.2026	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:45:21,24:21:756:24:860:-64.1755,0,-54.8209	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:320:319,1:319:11145:1:36:0,-92.7313,-999.351	0/0:101:99,2:99:3524:2:72:0,-23.5673,-310.532	0/1:32:21,11:21:737:11:396:-26.3498,0,-57.0177	0/0:43:43,0:43:1495:0:0:0,-12.9443,-134.837	0/1:59:27,32:27:930:32:1139:-85.0576,0,-66.2474	0/1:58:25,33:25:900:33:1176:-88.688,0,-63.8613	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.988	0/1:69:30,39:30:1016:39:1384:-103.459,0,-70.9678	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:112:112,0:112:3920:0:0:0,-33.7154,-352.994	0/1:22:12,10:12:413:10:360:-26.1216,0,-30.8752	0/1:102:39,63:39:1400:63:2217:-169.089,0,-95.5941	0/1:11:6,5:6:216:5:171:-12.4141,0,-16.4792	0/0:52:52,0:52:1841:0:0:0,-15.6536,-165.968	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:119:119,0:119:4147:0:0:0,-35.8226,-373.412	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:27:10,17:10:360:17:608:-46.9242,0,-24.6165	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/1:32:20,12:20:708:12:419:-28.4097,0,-54.4126	0/0:19:18,1:18:632:1:32:0,-2.52026,-54.0074	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:26:5,21:5:180:21:752:-60.1795,0,-8.72528	0/0:126:124,0:124:4383:0:0:0,-37.3277,-394.304	0/0:68:68,0:68:2393:0:0:0,-20.47,-215.624
chr04	3826434	.	A	T	173001	PASS	AB=0.484485;ABP=15.2064;AC=139;AF=0.747312;AN=186;AO=8268;CIGAR=1X;DP=11300;DPB=11300;DPRA=122.815;EPP=17939.4;EPPR=6584.74;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.9861;MQMR=59.9993;NS=93;NUMALT=1;ODDS=1.04342;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=295756;QR=107791;RO=3031;RPL=8268;RPP=17956.7;RPPR=6584.74;RPR=0;RUN=1;SAF=8266;SAP=17939.4;SAR=2;SRF=3031;SRP=6584.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:22,6:22:792:6:216:-11.3617,0,-63.1768	1/1:318:0,318:0:0:318:11359:-1022.19,-95.7275,0	1/1:123:0,123:0:0:123:4423:-398.24,-37.0267,0	1/1:195:0,195:0:0:195:7003:-630.329,-58.7009,0	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:100:0,100:0:0:100:3557:-320.338,-30.103,0	0/1:207:90,117:90:3176:117:4192:-315.148,0,-223.747	1/1:202:0,202:0:0:202:7208:-648.773,-60.8081,0	0/1:146:80,66:80:2861:66:2349:-167.717,0,-213.775	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	1/1:93:0,93:0:0:93:3320:-299.008,-27.9958,0	0/1:86:46,40:46:1595:40:1436:-103.649,0,-117.945	1/1:84:0,84:0:0:84:2997:-269.962,-25.2865,0	0/1:84:44,40:44:1561:40:1440:-104.611,0,-115.493	0/1:64:38,26:38:1341:26:928:-64.5723,0,-101.722	1/1:96:1,95:1:36:95:3399:-302.527,-25.3006,0	0/1:110:45,65:45:1608:65:2340:-177.746,0,-111.897	0/1:53:30,23:30:1061:23:824:-58.5284,0,-79.8448	0/1:275:144,131:144:5082:131:4690:-339.477,0,-374.738	0/1:176:100,76:100:3596:76:2732:-193.141,0,-270.864	0/1:168:126,42:126:4513:42:1508:-85.4416,0,-355.763	0/1:247:115,132:115:4083:132:4711:-349.796,0,-293.299	1/1:214:7,207:7:252:207:7426:-645.354,-41.3915,0	0/1:114:57,57:57:2005:57:2037:-149.284,0,-146.402	0/1:394:190,204:190:6723:204:7308:-539.161,0,-486.536	0/1:384:204,180:204:7269:180:6472:-466.965,0,-538.661	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:310:155,155:155:5537:155:5560:-407.203,0,-405.135	0/1:195:99,96:99:3472:96:3428:-250.034,0,-253.987	1/1:149:0,149:0:0:149:5340:-480.732,-44.8535,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:275:0,275:0:0:275:9815:-883.296,-82.7833,0	1/1:235:0,235:0:0:235:8401:-756.092,-70.7421,0	0/1:47:23,24:23:819:24:860:-63.5734,0,-59.8832	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:185:95,90:95:3397:90:3230:-235.231,0,-250.253	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:80:42,38:42:1512:38:1356:-98.2578,0,-112.292	0/1:98:39,59:39:1396:59:2101:-159.858,0,-96.4382	1/1:83:0,83:0:0:83:2960:-266.631,-24.9855,0	0/1:132:57,75:57:1999:75:2679:-201.619,0,-140.442	0/1:162:80,82:80:2837:82:2940:-216.067,0,-206.799	0/1:292:162,130:162:5794:130:4654:-331.12,0,-433.669	1/1:175:2,173:2:72:173:6199:-551.169,-45.8435,0	1/1:131:1,130:1:36:130:4637:-413.894,-35.8367,0	1/1:68:0,68:0:0:68:2438:-219.675,-20.47,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:182:79,103:79:2810:103:3696:-278.054,0,-198.349	0/1:82:46,36:46:1618:36:1269:-89.8272,0,-121.221	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:72:0,72:0:0:72:2573:-231.818,-21.6742,0	1/1:76:0,76:0:0:76:2706:-243.783,-22.8783,0	.:.:.:.:.:.:.:.	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:57:1,56:1:36:56:1999:-176.584,-13.5604,0	0/1:148:81,67:81:2863:67:2388:-170.623,0,-213.351	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:219:0,219:0:0:219:7834:-705.088,-65.9256,0	1/1:244:6,238:6:212:238:8518:-747.193,-54.0265,0	0/1:86:36,50:36:1296:50:1785:-135.043,0,-91.0554	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	0/1:263:143,120:143:5102:120:4299:-307.913,0,-380.15	0/1:152:106,46:106:3778:46:1652:-103.212,0,-294.46	1/1:28:0,28:0:0:28:995:-89.864,-8.42884,0	1/1:66:1,65:1:36:65:2340:-207.261,-16.2697,0	1/1:157:0,156:0:0:156:5562:-500.301,-46.9607,0	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:94:43,51:43:1544:51:1823:-136.054,0,-110.956	1/1:201:0,201:0:0:201:7144:-642.589,-60.507,0	1/1:180:0,180:0:0:180:6438:-579.504,-54.1854,0	0/1:148:65,83:65:2276:83:2956:-221.719,0,-160.544	0/1:123:61,62:61:2173:62:2220:-163.038,0,-158.808	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:88:0,88:0:0:88:3158:-284.443,-26.4906,0	1/1:103:0,103:0:0:103:3704:-333.56,-31.0061,0	1/1:229:0,229:0:0:229:8228:-740.513,-68.9359,0	1/1:240:1,239:1:36:239:8480:-759.604,-68.6489,0	1/1:81:1,80:1:36:80:2863:-254.308,-20.7852,0	0/1:149:75,74:75:2658:74:2647:-193.622,0,-194.61	1/1:203:0,203:0:0:203:7253:-652.821,-61.1091,0	0/1:69:35,34:35:1256:34:1199:-87.4437,0,-92.5742	0/1:79:42,37:42:1508:37:1316:-94.9604,0,-112.233	1/1:84:0,84:0:0:84:3007:-270.861,-25.2865,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:81:36,45:36:1296:45:1611:-120.896,0,-92.5605	0/1:87:59,28:59:2112:28:1004:-64.4863,0,-164.159	1/1:98:0,98:0:0:98:3520:-317.009,-29.5009,0	1/1:133:2,131:2:72:131:4684:-414.885,-33.2003,0
chr04	3986381	.	A	T,C	111770	PASS	AB=0.456381,0.542177;ABP=48.8539,45.873;AC=140,46;AF=0.752688,0.247312;AN=186;AO=3724,1507;CIGAR=1X,1X;DP=5238;DPB=5238;DPRA=0,1.20558;EPP=8089.57,3275.42;EPPR=18.2106;GTI=2;LEN=1,1;MEANALT=1.52688,2;MQM=59.9466,59.9715;MQMR=60;NS=93;NUMALT=2;ODDS=0.945819;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=133060,53756;QR=244;RO=7;RPL=3724,1507;RPP=8089.57,3275.42;RPPR=18.2106;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8089.57,3275.42;SAR=3724,1507;SRF=0;SRP=18.2106;SRR=7;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:52:0,24,28:0:0:24,28:856,1004:-152.026,-82.247,-75.0223,-70.1364,0,-61.7075	1/1:44:0,44,0:0:0:44,0:1572,0:-141.772,-13.2453,0,-141.772,-13.2453,-141.772	1/1:160:1,159,0:1:36:159,0:5697,0:-509.247,-44.5665,0,-509.548,-47.8638,-512.486	1/1:102:0,102,0:0:0:102,0:3664,0:-329.962,-30.7051,0,-329.962,-30.7051,-329.962	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:48:0,19,29:0:0:19,29:684,1040:-140.996,-85.1845,-79.4649,-56.1708,0,-47.4409	1/1:76:0,76,0:0:0:76,0:2724,0:-245.296,-22.8783,0,-245.296,-22.8783,-245.296	1/2:41:0,14,27:0:0:14,27:500,949:-118.362,-77.595,-73.3805,-41.1218,0,-32.9939	1/1:40:0,40,0:0:0:40,0:1425,0:-128.545,-12.0412,0,-128.545,-12.0412,-128.545	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/1:58:1,57,0:1:36:57,0:2048,0:-180.983,-13.8615,0,-181.284,-17.1587,-184.221	1/1:70:0,70,0:0:0:70,0:2501,0:-225.341,-21.0721,0,-225.341,-21.0721,-225.341	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/2:44:0,24,20:0:0:24,20:864,716:-129.246,-58.7471,-51.5224,-70.8578,0,-64.8372	1/2:43:0,25,18:0:0:25,18:896,648:-126.309,-53.2333,-45.7076,-73.4346,0,-68.0161	1/1:40:0,40,0:0:0:40,0:1440,0:-129.898,-12.0412,0,-129.898,-12.0412,-129.898	1/2:19:0,8,11:0:0:8,11:288,396:-56.1708,-32.6714,-30.2632,-23.8592,0,-20.5478	1/2:38:0,21,17:0:0:21,17:752,612:-111.622,-50.2959,-43.9743,-61.6846,0,-56.5671	1/2:57:0,30,27:0:0:30,27:1080,964:-167.073,-78.9486,-69.9177,-88.4823,0,-80.3545	1/2:109:0,47,62:0:0:47,62:1692,2217:-319.188,-181.129,-166.98,-138.418,0,-119.754	1/2:84:0,13,71:0:0:13,71:460,2537:-244.673,-207.206,-203.292,-37.8214,0,-16.4483	1/2:71:0,27,44:0:0:27,44:968,1550:-205.496,-126.542,-118.415,-79.3094,0,-66.0641	1/2:51:0,45,6:0:0:45,6:1616,212:-149.448,-17.6186,-4.07227,-132.184,0,-130.377	1/2:33:0,17,16:0:0:17,16:612,576:-97.2946,-47.3585,-42.241,-50.2959,0,-45.4794	1/2:130:0,56,74:0:0:56,74:1991,2636:-377.248,-215.188,-198.33,-162.416,0,-140.139	1/2:144:0,59,85:0:0:59,85:2075,3044:-417.489,-248.588,-230.828,-169.255,0,-143.667	1/1:18:1,17,0:1:32:17,0:612,0:-52.2141,-2.21923,0,-52.5152,-5.11751,-55.0913	1/2:140:0,75,65:0:0:75,65:2692,2305:-407.733,-188.143,-165.566,-219.947,0,-200.38	1/2:70:0,40,30:0:0:40,30:1440,1072:-205.259,-87.7612,-75.72,-117.857,0,-108.826	1/1:66:0,66,0:0:0:66,0:2338,0:-210.676,-19.868,0,-210.676,-19.868,-210.676	1/2:18:0,7,11:0:0:7,11:244,396:-52.5108,-32.6714,-30.5642,-20.1922,0,-16.8809	1/2:19:0,9,10:0:0:9,10:320,345:-54.4307,-28.3479,-25.6386,-26.4331,0,-23.4228	.:.:.:.:.:.:.:.	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:13:0,8,5:0:0:8,5:288,180:-38.5463,-15.0469,-12.6387,-23.8592,0,-22.354	1/1:122:0,122,0:0:0:122,0:4373,0:-393.251,-36.7257,0,-393.251,-36.7257,-393.251	1/1:58:0,58,0:0:0:58,0:2069,0:-186.479,-17.4597,0,-186.479,-17.4597,-186.479	1/2:54:0,29,25:0:0:29,25:1040,896:-158.261,-73.4346,-64.7047,-85.1845,0,-77.6587	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:73:0,34,39:0:0:34,39:1197,1372:-209.483,-112.036,-101.801,-97.7984,0,-86.0582	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/2:82:0,43,39:0:0:43,39:1492,1396:-235.423,-114.199,-101.255,-121.577,0,-109.837	1/2:36:0,21,15:0:0:21,15:741,540:-104.754,-44.4211,-38.0995,-60.69,0,-56.1745	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/2:106:0,49,57:0:0:49,57:1741,2029:-307.565,-165.722,-150.971,-142.199,0,-125.04	1/2:59:0,23,36:0:0:23,36:815,1296:-172.498,-106.107,-99.1832,-66.7477,0,-55.9106	1/2:77:0,27,50:0:0:27,50:972,1788:-225.448,-146.151,-138.023,-79.6563,0,-64.6048	1/1:50:0,49,1:0:0:49,1:1741,36:-156.613,-14.7505,0,-153.675,-11.4532,-153.374	1/1:57:0,57,0:0:0:57,0:2042,0:-184.052,-17.1587,0,-184.052,-17.1587,-184.052	1/1:48:0,48,0:0:0:48,0:1716,0:-154.726,-14.4494,0,-154.726,-14.4494,-154.726	1/2:12:0,4,8:0:0:4,8:144,284:-35.2464,-23.4951,-22.291,-12.1095,0,-9.70126	1/2:79:0,42,37:0:0:42,37:1489,1301:-227.558,-106.251,-93.6079,-121.659,0,-110.521	1/2:35:0,20,15:0:0:20,15:716,532:-102.089,-43.6976,-37.677,-58.7471,0,-54.2317	1/1:12:0,12,0:0:0:12,0:402,0:-36.4992,-3.61236,0,-36.4992,-3.61236,-36.4992	1/1:102:0,101,1:0:0:101,1:3594,36:-323.305,-30.404,0,-320.367,-27.1068,-320.066	1/1:30:0,30,0:0:0:30,0:1054,0:-95.1675,-9.0309,0,-95.1675,-9.0309,-95.1675	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-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chr04	4193459	.	G	A	34141.7	PASS	AB=0.513743;ABP=9.39643;AC=46;AF=0.244681;AN=188;AO=2016;CIGAR=1X;DP=7962;DPB=7962;DPRA=1.15712;EPP=4363.34;EPPR=12780.2;GTI=0;LEN=1;MEANALT=1.09615;MQM=59.9544;MQMR=59.9963;NS=94;NUMALT=1;ODDS=5.6934;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72098;QR=211808;RO=5936;RPL=2;RPP=4363.34;RPPR=12788.9;RPR=2014;RUN=1;SAF=2016;SAP=4380.7;SAR=0;SRF=5935;SRP=12884.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:33,44:33:1180:44:1569:-118.32,0,-83.3287	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:129:129,0:129:4602:0:0:0,-38.8329,-414.345	0/0:120:120,0:120:4291:0:0:0,-36.1236,-386.367	0/0:56:56,0:56:1984:0:0:0,-16.8577,-178.832	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.6	0/1:124:72,52:72:2572:52:1834:-128.009,0,-194.402	0/0:116:116,0:116:4134:0:0:0,-34.9195,-372.242	0/1:53:35,18:35:1244:18:648:-42.6973,0,-96.3101	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.466	0/0:126:126,0:126:4489:0:0:0,-37.9298,-404.179	0/0:113:113,0:113:4044:0:0:0,-34.0164,-364.148	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:95:47,48:47:1673:48:1724:-126.848,0,-122.257	0/1:76:49,27:49:1755:27:957:-63.5656,0,-135.355	0/0:45:45,0:45:1578:0:0:0,-13.5463,-142.306	0/1:41:24,17:24:852:17:612:-43.0712,0,-64.6582	0/1:61:37,23:37:1328:23:828:-56.5637,0,-101.544	0/1:157:82,75:82:2935:75:2688:-194.903,0,-217.122	0/1:131:73,58:73:2601:58:2072:-147.316,0,-194.902	0/1:54:16,38:16:576:38:1360:-106.445,0,-35.9194	0/1:98:55,43:55:1976:43:1521:-107.68,0,-148.614	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.623	0/1:98:40,58:40:1411:58:2076:-157.292,0,-97.7856	0/1:156:88,68:88:3148:68:2433:-172.259,0,-236.585	0/1:192:79,113:79:2776:113:4052:-307.069,0,-192.281	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:161:81,80:81:2881:80:2875:-210.492,0,-211.06	0/1:64:27,37:27:968:37:1313:-99.2038,0,-68.1714	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/0:19:18,0:18:644:0:0:0,-5.41854,-57.9309	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2163	0/1:19:9,10:9:324:10:360:-26.9682,0,-23.7863	0/0:202:201,1:201:7181:1:36:0,-57.2098,-642.748	0/0:72:72,0:72:2519:0:0:0,-21.6742,-226.959	0/1:66:31,35:31:1108:35:1252:-93.1171,0,-80.163	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:112:56,55:56:1989:55:1964:-143.261,0,-145.508	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/1:160:65,95:65:2327:95:3399:-257.959,0,-161.524	0/1:62:33,29:33:1180:29:1040:-75.2459,0,-87.8442	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.284	0/1:63:31,32:31:1108:32:1144:-84.3046,0,-81.0661	0/1:102:38,64:38:1353:64:2281:-174.845,0,-91.3633	0/1:123:53,70:53:1879:70:2491:-187.415,0,-132.361	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/0:75:74,0:74:2645:0:0:0,-22.2762,-237.935	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/1:94:51,43:51:1824:43:1540:-110.596,0,-136.144	0/1:66:36,30:36:1273:30:1076:-77.2849,0,-95.0029	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:104:104,0:104:3709:0:0:0,-31.3071,-334.011	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:16:11,5:11:366:5:180:-11.7356,0,-28.442	0/1:109:66,43:66:2345:43:1536:-105.721,0,-178.496	0/0:134:132,1:132:4698:1:36:0,-36.7236,-419.457	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:100:44,56:44:1580:56:1992:-149.444,0,-112.389	0/0:137:130,7:130:4652:7:252:0,-18.2121,-395.813	0/1:90:36,54:36:1296:54:1923:-146.253,0,-89.8512	0/0:63:62,0:62:2228:0:0:0,-18.6639,-200.424	0/1:150:63,86:63:2247:86:3092:-233.293,0,-157.28	0/1:154:57,97:57:2040:97:3468:-265.974,0,-137.513	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.776	0/0:66:65,0:65:2321:0:0:0,-19.5669,-208.789	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:25:11,14:11:392:14:504:-38.1723,0,-28.0943	0/0:87:84,3:84:2984:3:108:0,-16.1144,-258.716	0/1:74:33,41:33:1180:41:1453:-108.788,0,-84.2318	0/0:120:119,0:119:4252:0:0:0,-35.8226,-382.649	0/0:142:139,3:139:4975:3:108:0,-32.6711,-437.822	0/1:124:67,57:67:2399:57:2029:-145.554,0,-178.838	0/1:105:50,55:50:1769:55:1976:-146.506,0,-127.883	0/1:13:6,7:6:212:7:248:-18.7508,0,-15.5114	0/0:81:81,0:81:2880:0:0:0,-24.3834,-259.438	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/0:180:180,0:180:6438:0:0:0,-54.1854,-579.506	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.128	0/0:125:125,0:125:4452:0:0:0,-37.6287,-400.85	0/1:61:27,33:27:937:33:1188:-88.807,0,-66.22	0/0:132:132,0:132:4717:0:0:0,-39.736,-424.688	0/1:20:7,13:7:248:13:468:-36.439,0,-16.6436	0/1:69:38,31:38:1364:31:1112:-79.6203,0,-102.29	0/0:94:93,1:93:3328:1:36:0,-24.6985,-296.14	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/1:136:72,64:72:2564:64:2296:-165.961,0,-190.071	0/1:80:31,49:31:1116:49:1760:-134.601,0,-76.6693	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/0:138:138,0:138:4920:0:0:0,-41.5421,-442.953
chr04	4348077	.	C	T	133674	PASS	AB=0.57154;ABP=173.892;AC=142;AF=0.755319;AN=188;AO=7126;CIGAR=1X;DP=8791;DPB=8791;DPRA=0;EPP=15476.9;EPPR=3607.65;GTI=4;LEN=1;MEANALT=1.05319;MQM=36.7881;MQMR=31.6301;NS=94;NUMALT=1;ODDS=2.18297;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=252574;QR=58885;RO=1660;RPL=0;RPP=15476.9;RPPR=3607.65;RPR=7126;RUN=1;SAF=7126;SAP=15476.9;SAR=0;SRF=1660;SRP=3607.65;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:12,29:12:424:29:1031:-71.9814,0,-20.6699	1/1:39:0,39:0:0:39:1381:-114.41,-11.7402,0	1/1:239:1,238:1:36:238:8426:-692.954,-68.3516,0	1/1:211:0,211:0:0:211:7506:-633.062,-63.5173,0	1/1:49:0,49:0:0:49:1752:-144.755,-14.7505,0	1/1:48:0,48:0:0:48:1697:-140.727,-14.4494,0	0/1:67:25,42:25:891:42:1496:-106.829,0,-48.4354	1/1:128:1,127:1:32:127:4458:-363.706,-36.4648,0	0/1:69:17,52:17:596:52:1824:-130.416,0,-25.7056	1/1:76:0,76:0:0:76:2692:-226.946,-22.8783,0	1/1:143:0,143:0:0:143:5093:-428.789,-43.0473,0	1/1:104:0,103:0:0:103:3672:-303.383,-31.0061,0	1/1:88:1,87:1:36:87:3106:-250.583,-22.8924,0	1/1:238:0,238:0:0:238:8430:-696.424,-71.6451,0	0/1:77:45,32:45:1604:32:1148:-73.9118,0,-99.8951	0/1:89:53,36:53:1887:36:1273:-76.2911,0,-118.645	1/1:85:0,85:0:0:85:3025:-247.234,-25.5876,0	0/1:38:19,19:19:676:19:680:-45.0828,0,-39.9412	0/1:56:30,26:30:1076:26:921:-59.4646,0,-64.6313	0/1:133:52,81:52:1848:81:2892:-200.974,0,-101.694	0/1:182:56,126:56:1976:126:4413:-311.176,0,-96.5397	0/1:41:22,19:22:784:19:684:-47.0145,0,-45.0344	0/1:52:23,29:23:820:29:1013:-69.5979,0,-47.8208	1/1:61:3,58:3:108:58:2065:-162.027,-9.81012,0	0/1:45:17,28:17:587:28:1000:-69.4771,0,-31.6244	0/1:195:90,105:90:3204:105:3707:-259.473,0,-179.816	0/1:206:77,129:77:2733:129:4601:-314.748,0,-146.618	1/1:20:0,20:0:0:20:703:-56.4305,-6.0206,0	0/1:186:80,106:80:2818:106:3734:-262.929,0,-154.724	0/1:97:39,58:39:1359:58:2038:-140.255,0,-72.3842	1/1:132:0,132:0:0:132:4670:-393.222,-39.736,0	0/1:4:2,2:2:72:2:72:-5.06403,0,-4.5995	0/1:23:11,12:11:392:12:413:-27.7123,0,-22.6004	1/1:6:0,6:0:0:6:216:-18.1446,-1.80618,0	1/1:19:1,18:1:36:18:626:-47.5366,-2.89849,0	0/1:37:12,25:12:428:25:888:-61.8744,0,-21.7394	1/1:190:0,190:0:0:190:6757:-579.681,-57.1957,0	1/1:81:0,80:0:0:80:2750:-227.374,-24.0824,0	0/1:91:45,45:45:1572:45:1608:-104.792,0,-93.5109	0/1:3:1,2:1:36:2:57:-4.21324,0,-2.15145	0/1:104:46,58:46:1640:58:2041:-136.615,0,-91.4022	1/1:44:1,43:1:36:43:1525:-121.76,-9.79083,0	0/1:133:48,85:48:1699:85:2994:-206.734,0,-90.9515	0/1:50:31,19:31:1103:19:680:-42.5184,0,-69.9911	1/1:57:0,57:0:0:57:2036:-171.95,-17.1587,0	0/1:56:14,42:14:496:42:1500:-112.103,0,-19.0221	0/1:97:44,53:44:1572:53:1904:-126.696,0,-89.0868	0/1:122:49,73:49:1740:73:2593:-182.462,0,-95.5843	1/1:64:1,63:1:36:63:2236:-185.789,-15.6702,0	1/1:132:0,132:0:0:132:4679:-394.529,-39.736,0	1/1:70:0,70:0:0:70:2496:-215.549,-21.0721,0	0/1:19:6,13:6:216:13:460:-33.1361,0,-11.0804	0/1:108:49,59:49:1738:59:2086:-140.086,0,-100.001	0/1:96:24,72:24:864:72:2542:-190.077,0,-36.6286	1/1:5:0,5:0:0:5:167:-14.1231,-1.50515,0	1/1:201:1,200:1:36:200:7084:-578.555,-57.4525,0	1/1:20:0,20:0:0:20:701:-59.8848,-6.0206,0	1/1:15:0,15:0:0:15:536:-46.6318,-4.51545,0	0/1:12:3,9:3:104:9:324:-23.9552,0,-2.86849	0/1:71:24,47:24:856:47:1646:-115.335,0,-43.7541	1/1:121:0,121:0:0:121:4321:-365.811,-36.4246,0	1/1:11:0,11:0:0:11:396:-33.876,-3.31133,0	0/1:134:66,68:66:2348:68:2424:-169.34,0,-135.089	1/1:138:1,136:1:36:136:4876:-409.78,-38.4404,0	0/1:62:15,47:15:536:47:1688:-120.994,0,-22.7369	1/1:118:0,118:0:0:118:4195:-353.56,-35.5215,0	0/1:154:58,96:58:2064:96:3410:-241.075,0,-110.632	0/1:113:68,45:68:2420:45:1589:-100.441,0,-150.388	1/1:142:1,141:1:36:141:5009:-410.77,-39.5001,0	1/1:36:0,36:0:0:36:1283:-106.216,-10.8371,0	1/1:65:0,65:0:0:65:2304:-197.94,-19.567,0	0/1:30:14,16:14:492:16:546:-37.6598,0,-29.3387	1/1:98:0,98:0:0:98:3450:-284.873,-29.5009,0	0/1:90:27,63:27:968:63:2213:-156.093,0,-46.4228	1/1:443:0,443:0:0:443:15479:-1276.85,-133.356,0	1/1:132:0,132:0:0:132:4698:-397.484,-39.736,0	0/1:124:50,74:50:1756:74:2652:-180.95,0,-98.2459	0/1:73:39,34:39:1400:34:1209:-77.0715,0,-85.4042	0/1:7:2,5:2:68:5:180:-13.0683,0,-3.54875	1/1:73:0,73:0:0:73:2616:-213.946,-21.9752,0	1/1:151:0,151:0:0:151:5298:-439.32,-45.4555,0	1/1:157:0,157:0:0:157:5537:-463.786,-47.2617,0	1/1:78:0,78:0:0:78:2781:-235.195,-23.4803,0	1/1:82:0,82:0:0:82:2932:-244.703,-24.6845,0	0/1:57:35,22:35:1227:22:788:-49.8366,0,-75.4623	1/1:149:0,149:0:0:149:5323:-448.3,-44.8535,0	0/1:13:7,6:7:243:6:216:-14.2312,0,-14.3176	0/1:87:42,45:42:1488:45:1604:-107.082,0,-86.0408	1/1:97:0,96:0:0:96:3436:-280.657,-28.8989,0	1/1:111:1,110:1:32:110:3917:-317.15,-30.2165,0	0/1:236:115,121:115:4103:121:4320:-281.91,0,-242.32	0/1:64:42,22:42:1465:22:780:-46.0018,0,-94.7381	1/1:73:0,73:0:0:73:2560:-215.827,-21.9752,0	1/1:107:1,106:1:36:106:3796:-315.602,-28.617,0
chr04	4348091	.	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chr04	4348125	.	A	C	10740.4	PASS	AB=0.341966;ABP=781.998;AC=33;AF=0.179348;AN=184;AO=1246;CIGAR=1X;DP=10563;DPB=10563;DPRA=1.1258;EPP=2708.66;EPPR=20219.4;GTI=7;LEN=1;MEANALT=1.02778;MQM=31.4093;MQMR=42.5748;NS=92;NUMALT=1;ODDS=1.30034;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44221;QR=331814;RO=9314;RPL=1245;RPP=2699.99;RPPR=1753.34;RPR=1;RUN=1;SAF=1245;SAP=2699.99;SAR=1;SRF=3286;SRP=1755.89;SRR=6028;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:532:0:0:0,-4.51545,-45.9608	0/0:140:140,0:140:4986:0:0:0,-42.1442,-438.246	0/0:75:75,0:75:2664:0:0:0,-22.5772,-234.206	0/0:385:385,0:385:13725:0:0:0,-115.897,-1185.05	0/0:76:76,0:76:2728:0:0:0,-22.8783,-239.948	0/0:59:59,0:59:2083:0:0:0,-17.7608,-181.176	0/1:154:129,25:129:4590:25:900:-22.6739,0,-354.819	0/0:101:101,0:101:3594:0:0:0,-30.404,-314.68	0/0:46:46,0:46:1652:0:0:0,-13.8474,-143.129	0/0:202:202,0:202:7209:0:0:0,-60.8081,-628.171	0/0:185:184,0:184:6570:0:0:0,-55.3895,-556.057	0/0:58:58,0:58:2049:0:0:0,-17.4597,-179.389	0/0:74:74,0:74:2647:0:0:0,-22.2762,-231.057	0/0:47:47,0:47:1626:0:0:0,-14.1484,-142.219	0/1:109:63,46:63:2256:46:1643:-92.5141,0,-162.382	0/1:69:23,46:23:816:46:1648:-105.712,0,-50.44	0/0:90:90,0:90:3198:0:0:0,-27.0927,-279.399	0/0:47:47,0:47:1663:0:0:0,-14.1484,-144.103	0/0:17:17,0:17:585:0:0:0,-5.11751,-51.6922	0/1:224:177,47:177:6305:47:1675:-59.8865,0,-474.232	0/1:111:50,61:50:1791:61:2168:-131.859,0,-123.991	0/1:91:64,27:64:2278:27:939:-42.6821,0,-174.581	0/1:66:45,21:45:1604:21:731:-37.1772,0,-117.892	0/0:118:115,3:115:4103:3:108:0,-26.9688,-354.633	0/1:52:31,21:31:1088:21:744:-41.6549,0,-80.9377	0/1:335:247,88:247:8768:88:3126:-131.467,0,-667.466	0/1:174:100,74:100:3545:74:2644:-148.813,0,-261.664	0/0:53:53,0:53:1874:0:0:0,-15.9546,-164.312	0/1:273:198,75:198:7047:75:2632:-115.932,0,-531.681	0/1:99:60,39:60:2135:39:1392:-73.3745,0,-157.918	0/0:205:205,0:205:7339:0:0:0,-61.7111,-627.768	0/1:7:5,2:5:180:2:72:-3.69641,0,-14.1295	1/1:12:0,12:0:0:12:432:-32.4152,-3.61236,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.52101	0/0:11:11,0:11:396:0:0:0,-3.31133,-34.5371	.:.:.:.:.:.:.:.	0/0:390:390,0:390:13957:0:0:0,-117.402,-1220.95	0/0:146:146,0:146:5223:0:0:0,-43.9504,-459.908	0/0:36:36,0:36:1284:0:0:0,-10.8371,-113.031	0/1:5:4,1:4:140:1:36:-1.54939,0,-11.0516	0/1:109:65,44:65:2319:44:1572:-85.4121,0,-168.94	0/0:26:26,0:26:917:0:0:0,-7.82678,-81.1379	0/1:124:78,46:78:2764:46:1616:-87.098,0,-206.79	0/1:97:64,33:64:2285:33:1166:-60.6924,0,-169.83	0/0:135:135,0:135:4824:0:0:0,-40.639,-418.966	0/1:71:57,14:57:2036:14:496:-14.4397,0,-154.226	0/0:62:62,0:62:2197:0:0:0,-18.6639,-191.779	0/1:210:159,51:159:5684:51:1799:-74.9231,0,-428.469	0/0:208:208,0:208:7418:0:0:0,-62.6142,-647.159	0/0:254:254,0:254:9034:0:0:0,-76.4616,-780.192	0/0:214:214,0:214:7619:0:0:0,-64.4204,-672.629	0/1:17:11,4:11:392:4:140:-6.33841,0,-28.3513	0/0:26:26,0:26:928:0:0:0,-7.82678,-81.1694	0/1:120:97,23:97:3453:23:810:-25.1055,0,-263.926	0/0:18:18,0:18:648:0:0:0,-5.41854,-56.0054	0/0:104:103,1:103:3700:1:36:0,-28.2526,-321.253	0/0:68:68,0:68:2444:0:0:0,-20.47,-214.054	0/0:18:18,0:18:644:0:0:0,-5.41854,-56.4095	0/1:17:14,3:14:504:3:108:-1.37795,0,-38.3259	0/1:50:25,25:25:888:25:900:-53.106,0,-63.6493	0/0:224:224,0:224:7931:0:0:0,-67.4307,-686.455	0/0:24:24,0:24:856:0:0:0,-7.22472,-74.8196	0/1:233:163,70:163:5819:70:2512:-115.728,0,-441.09	0/0:304:303,1:303:10815:1:36:0,-88.4586,-936.156	0/1:45:30,15:30:1068:15:540:-27.9954,0,-79.6709	0/0:202:202,0:202:7182:0:0:0,-60.8081,-617.263	0/1:222:161,61:161:5732:61:2158:-97.6952,0,-427.662	0/1:140:71,69:71:2540:69:2426:-142.838,0,-176.781	0/0:20:20,0:20:711:0:0:0,-6.0206,-62.9219	0/0:69:69,0:69:2442:0:0:0,-20.7711,-213.706	0/0:161:161,0:161:5734:0:0:0,-48.4658,-502.753	0/1:31:17,14:17:600:14:500:-29.3197,0,-42.3876	0/0:85:85,0:85:3039:0:0:0,-25.5875,-263.097	0/0:50:50,0:50:1770:0:0:0,-15.0515,-156.316	0/0:89:89,0:89:3166:0:0:0,-26.7917,-279.211	0/0:261:261,0:261:9270:0:0:0,-78.5688,-806.067	0/0:50:50,0:50:1800:0:0:0,-15.0515,-156.403	0/0:55:55,0:55:1955:0:0:0,-16.5566,-171.508	.:.:.:.:.:.:.:.	0/0:94:94,0:94:3334:0:0:0,-28.2968,-293.894	0/0:101:101,0:101:3617:0:0:0,-30.404,-313.972	0/0:330:330,0:330:11798:0:0:0,-99.3399,-1015.64	0/0:180:180,0:180:6402:0:0:0,-54.1854,-557.926	0/0:158:158,0:158:5645:0:0:0,-47.5627,-483.582	0/1:112:77,35:77:2724:35:1225:-59.965,0,-205.63	0/0:306:305,1:305:10862:1:36:0,-88.869,-936.47	0/0:19:19,0:19:680:0:0:0,-5.71957,-60.0459	0/0:36:36,0:36:1259:0:0:0,-10.8371,-110.139	0/0:52:52,0:52:1817:0:0:0,-15.6536,-159.277	0/0:27:27,0:27:968:0:0:0,-8.12781,-86.1368	0/1:135:27,108:27:944:108:3840:-251.927,0,-41.3894	0/1:89:49,40:49:1747:40:1415:-82.4886,0,-124.217	0/0:121:121,0:121:4319:0:0:0,-36.4246,-371.611	0/0:232:232,0:232:8304:0:0:0,-69.839,-717.021
chr04	4787514	.	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chr04	5057091	.	C	T	343000	PASS	AB=0.573506;ABP=299.897;AC=141;AF=0.758065;AN=186;AO=12655;CIGAR=1X;DP=15375;DPB=15375;DPRA=0;EPP=557.111;EPPR=5885.54;GTI=5;LEN=1;MEANALT=1.03226;MQM=59.997;MQMR=59.9868;NS=93;NUMALT=1;ODDS=0.830995;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=447819;QR=96255;RO=2717;RPL=12655;RPP=27483;RPPR=5902.9;RPR=0;RUN=1;SAF=5429;SAP=557.111;SAR=7226;SRF=2715;SRP=5885.54;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:124:51,73:51:1804:73:2539:-191.432,0,-125.311	1/1:263:0,263:0:0:263:9341:-840.66,-79.1709,0	1/1:444:0,444:0:0:444:15663:-1409.39,-133.657,0	1/1:434:0,434:0:0:434:15373:-1383.3,-130.647,0	1/1:164:0,164:0:0:164:5791:-521.312,-49.3689,0	1/1:142:0,142:0:0:142:5007:-450.78,-42.7463,0	0/1:190:57,133:57:2035:133:4745:-370.013,0,-126.226	1/1:416:2,414:2:72:414:14653:-1311.69,-118.392,0	0/1:196:73,123:73:2585:123:4384:-335.734,0,-173.897	1/1:235:0,235:0:0:235:8286:-745.758,-70.7421,0	1/1:100:1,99:1:36:99:3551:-316.199,-26.5047,0	1/1:167:0,167:0:0:167:5836:-525.36,-50.272,0	1/1:148:0,148:0:0:148:5275:-474.885,-44.5524,0	1/1:132:0,132:0:0:132:4685:-421.811,-39.736,0	0/1:119:43,76:43:1523:76:2696:-207.061,0,-101.54	0/1:85:26,59:26:913:59:2111:-164.671,0,-56.8965	1/1:121:0,121:0:0:121:4342:-390.954,-36.4246,0	0/1:60:20,40:20:707:40:1424:-110.396,0,-45.8928	0/1:34:6,28:6:216:28:1004:-80.4408,0,-9.55549	0/1:274:129,145:129:4551:145:5140:-379.637,0,-327.276	0/1:240:107,133:107:3750:133:4714:-352.174,0,-265.454	0/1:192:149,43:149:5295:43:1501:-77.5834,0,-418.889	0/1:220:107,112:107:3789:112:3952:-289.589,0,-274.925	1/1:205:11,194:11:387:194:6867:-582.94,-26.5452,0	0/1:160:63,96:63:2252:96:3410:-258.892,0,-154.72	0/1:382:162,220:162:5764:220:7775:-584.79,0,-403.884	0/1:278:158,120:158:5557:120:4232:-297.377,0,-416.557	1/1:88:0,88:0:0:88:3112:-280.305,-26.4906,0	0/1:186:148,37:148:5253:37:1328:-63.7719,0,-416.85	0/1:157:57,100:57:2022:100:3546:-272.088,0,-134.99	1/1:262:0,262:0:0:262:9269:-834.187,-78.8699,0	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:13:8,5:8:288:5:172:-11.9046,0,-22.354	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:13:5,8:5:176:8:271:-20.806,0,-12.2716	1/1:396:0,396:0:0:396:14000:-1259.78,-119.208,0	1/1:144:0,144:0:0:144:5109:-459.957,-43.3483,0	0/1:48:18,30:18:640:30:1061:-81.3499,0,-43.4799	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:192:61,131:61:2167:131:4665:-362.215,0,-137.499	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:285:143,142:143:5086:142:5049:-368.764,0,-372.093	0/1:76:24,52:24:860:52:1833:-142.37,0,-54.8436	1/1:148:1,147:1:36:147:5247:-468.77,-40.9542,0	0/1:264:129,135:129:4562:135:4749:-348.1,0,-331.273	0/1:240:94,146:94:3322:146:5217:-397.422,0,-226.953	0/1:287:91,196:91:3231:196:6938:-538.096,0,-204.618	1/1:205:1,204:1:32:204:7265:-650.706,-58.5118,0	1/1:263:0,263:0:0:263:9301:-837.066,-79.1709,0	1/1:185:0,185:0:0:185:6512:-586.173,-55.6906,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:213:101,112:101:3589:112:3977:-293.999,0,-259.098	0/1:84:29,55:29:1040:55:1942:-149.768,0,-68.6278	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:198:0,198:0:0:198:6985:-628.724,-59.6039,0	1/1:119:0,119:0:0:119:4187:-377.014,-35.8226,0	1/1:5:0,5:0:0:5:161:-14.8066,-1.50515,0	0/1:19:8,11:8:284:11:384:-29.1751,0,-20.1838	0/1:108:37,71:37:1304:71:2517:-194.27,0,-85.1474	1/1:125:0,125:0:0:125:4451:-400.76,-37.6288,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:170:121,49:121:4241:49:1739:-105.619,0,-330.697	1/1:413:5,408:5:180:408:14366:-1276.17,-107.773,0	0/1:64:17,47:17:604:47:1650:-129.52,0,-35.4247	.:.:.:.:.:.:.:.	0/1:281:99,182:99:3502:182:6465:-497.351,0,-230.801	0/1:208:96,112:96:3388:112:3934:-291.642,0,-242.522	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	1/1:191:0,191:0:0:191:6726:-605.425,-57.4967,0	1/1:136:0,136:0:0:136:4813:-433.324,-40.9401,0	0/1:7:5,2:5:172:2:68:-4.3505,0,-13.7108	1/1:190:0,190:0:0:190:6667:-600.118,-57.1957,0	0/1:109:30,79:30:1076:79:2780:-217.629,0,-64.3406	1/1:486:0,486:0:0:486:17172:-1545.14,-146.301,0	1/1:133:1,132:1:36:132:4727:-421.99,-36.4387,0	0/1:220:54,166:54:1916:166:5894:-464.345,0,-106.491	0/1:68:31,37:31:1116:37:1328:-99.3522,0,-80.2817	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	1/1:207:0,207:0:0:207:7337:-660.382,-62.3132,0	1/1:191:0,191:0:0:191:6714:-604.342,-57.4967,0	1/1:487:0,487:0:0:487:17128:-1541.19,-146.602,0	1/1:167:0,167:0:0:167:5948:-535.429,-50.272,0	1/1:147:0,147:0:0:147:5214:-469.4,-44.2514,0	0/1:114:26,88:26:906:88:3148:-249.228,0,-47.536	1/1:292:0,292:0:0:292:10357:-932.06,-87.9008,0	0/1:44:15,29:15:532:29:1040:-80.669,0,-34.9678	0/1:108:39,69:39:1395:69:2413:-184.913,0,-93.3371	1/1:132:0,132:0:0:132:4654:-419.025,-39.736,0	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	0/1:75:15,60:15:527:60:2138:-170.109,0,-25.1829	0/1:99:35,64:35:1248:64:2274:-175.119,0,-82.8229	1/1:341:0,341:0:0:341:11978:-1077.89,-102.651,0	1/1:243:0,243:0:0:243:8626:-776.337,-73.1503,0
chr04	5101330	.	GTTG	GTCG,GTC	224336	PASS	AB=0.657739,0.336622;ABP=769.583,825.367;AC=143,45;AF=0.760638,0.239362;AN=188;AO=7467,1198;CIGAR=2M1X1M,1M1D1M1X;DP=8719;DPB=8418;DPRA=0,0.764265;EPP=16182.7,2604.43;EPPR=20.3821;GTI=8;LEN=1,3;MEANALT=1.89362,2.2766;MQM=56.1399,49.7262;MQMR=60;NS=94;NUMALT=2;ODDS=1.08587;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=263469,36954;QR=276;RO=8;RPL=3902,1198;RPP=36.0372,2604.43;RPPR=12.7819;RPR=3565,0;RUN=1,1;SAF=3906,1198;SAP=37.6239,2604.43;SAR=3561,0;SRF=1;SRP=12.7819;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,29,12:0:0:29,12:1023,377:-113.869,-30.5607,-21.8308,-83.6334,0,-80.0211	1/1:114:1,112,0:1:34:112,0:3963,0:-352.698,-30.8873,0,-352.999,-33.7154,-355.757	1/1:307:0,305,0:0:0:305,0:10781,0:-969.217,-91.8142,0,-969.217,-91.8142,-969.217	1/1:173:0,173,0:0:0:173,0:6093,0:-547.375,-52.0782,0,-547.375,-52.0782,-547.375	1/1:49:0,49,0:0:0:49,0:1726,0:-154.87,-14.7505,0,-154.87,-14.7505,-154.87	1/1:49:0,49,0:0:0:49,0:1706,0:-153.64,-14.7505,0,-153.64,-14.7505,-153.64	1/2:107:0,85,22:0:0:85,22:2988,644:-294.2,-51.3222,-25.7347,-243.181,0,-236.558	1/1:139:0,139,0:0:0:139,0:4850,0:-435.996,-41.8432,0,-435.996,-41.8432,-435.996	1/2:116:0,81,35:0:0:81,35:2853,1044:-315.047,-83.4462,-59.0628,-231.915,0,-221.379	1/1:102:0,101,0:0:0:101,0:3602,0:-323.043,-30.404,0,-323.043,-30.404,-323.043	1/1:98:0,97,0:0:0:97,0:3430,0:-308.213,-29.1999,0,-308.213,-29.1999,-308.213	1/1:151:1,149,0:1:30:149,0:5264,0:-470.383,-42.4599,0,-470.684,-44.8535,-473.083	1/1:98:0,98,0:0:0:98,0:3449,0:-310.243,-29.5009,0,-310.243,-29.5009,-310.243	1/1:103:0,103,0:0:0:103,0:3651,0:-328.163,-31.0061,0,-328.163,-31.0061,-328.163	1/2:81:0,60,21:0:0:60,21:2105,601:-218.942,-47.9244,-29.8626,-171.32,0,-164.999	1/2:58:0,37,21:0:0:37,21:1305,646:-157.698,-51.9834,-40.8453,-106.038,0,-99.7162	1/1:123:1,122,0:1:36:122,0:4328,0:-385.36,-33.4284,0,-385.661,-36.7257,-388.598	1/2:68:0,49,19:0:0:49,19:1714,538:-181.894,-42.9143,-28.1638,-139.281,0,-133.561	1/2:65:0,48,17:0:0:48,17:1674,511:-176.797,-40.8016,-26.3521,-136.306,0,-131.189	1/2:130:0,98,32:0:0:98,32:3490,960:-360.965,-76.7848,-47.2838,-284.493,0,-274.861	1/2:130:0,75,55:0:0:75,55:2675,1707:-354.224,-136.38,-113.802,-218.173,0,-201.617	1/2:46:0,25,21:0:0:25,21:900,703:-130.256,-56.8798,-49.3541,-73.7208,0,-67.3991	1/2:43:0,21,22:0:0:21,22:748,695:-116.79,-55.8542,-49.5326,-61.2709,0,-54.6482	1/1:68:0,65,3:0:0:65,3:2320,91:-208.302,-19.567,0,-201.034,-11.9944,-200.131	1/2:57:0,41,15:0:0:41,15:1429,467:-153.515,-37.358,-25.0158,-116.121,0,-111.605	1/2:157:0,99,57:0:0:99,57:3511,1819:-431.352,-145.786,-115.984,-285.637,0,-268.478	1/2:211:0,135,75:0:0:135,75:4760,2276:-567.688,-181.095,-140.456,-386.554,0,-363.976	1/1:56:0,56,0:0:0:56,0:1995,0:-179.137,-16.8577,0,-179.137,-16.8577,-179.137	1/2:217:1,130,85:1:36:130,85:4597,2639:-581.271,-208.186,-171.99,-370.436,0,-347.786	1/2:86:0,64,22:0:0:64,22:2217,625:-229.342,-49.8147,-30.5488,-179.827,0,-173.204	1/1:96:0,94,0:0:0:94,0:3346,0:-300.312,-28.2968,0,-300.312,-28.2968,-300.312	1/2:5:0,3,2:0:0:3,2:104,68:-14.278,-5.83535,-4.93226,-8.78436,0,-8.1823	1/2:16:0,9,7:0:0:9,7:324,228:-44.9756,-18.524,-15.8147,-26.7903,0,-24.6831	1/1:2:0,2,0:0:0:2,0:72,0:-6.83188,-0.60206,0,-6.83188,-0.60206,-6.83188	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:18:0,13,5:0:0:13,5:431,170:-48.9465,-14.0937,-10.1804,-35.1897,0,-33.6845	1/1:266:0,266,0:0:0:266,0:9395,0:-844.198,-80.074,0,-844.198,-80.074,-844.198	1/1:95:0,95,0:0:0:95,0:3388,0:-304.441,-28.5979,0,-304.441,-28.5979,-304.441	1/2:77:0,61,16:0:0:61,16:2140,461:-210.946,-36.8952,-18.5324,-174.352,0,-169.535	1/2:2:0,1,1:0:0:1,1:36,32:-5.8522,-2.89465,-2.59362,-3.29724,0,-2.99621	1/2:131:0,90,41:0:0:90,41:3172,1274:-359.93,-102.01,-74.9176,-258.242,0,-245.9	1/1:74:0,74,0:0:0:74,0:2633,0:-236.987,-22.2762,0,-236.987,-22.2762,-236.987	1/2:126:0,83,43:0:0:83,43:2920,1415:-351.56,-113.986,-89.0009,-237.909,0,-224.965	1/2:75:0,51,24:0:0:51,24:1811,691:-202.022,-55.0914,-39.7389,-147.239,0,-140.014	1/1:101:0,101,0:0:0:101,0:3578,0:-321.582,-30.404,0,-321.582,-30.404,-321.582	1/2:54:0,34,20:0:0:34,20:1197,632:-148.4,-51.0507,-40.8156,-97.6778,0,-91.6572	1/2:88:0,63,25:0:0:63,25:2204,802:-243.399,-64.5795,-45.6146,-179.147,0,-171.621	1/2:124:2,86,36:2:68:86,36:3031,1108:-327.704,-82.1319,-61.761,-240.637,0,-235.315	1/1:84:0,84,0:0:0:84,0:2987,0:-268.519,-25.2865,0,-268.519,-25.2865,-268.519	1/1:132:0,131,0:0:0:131,0:4654,0:-417.97,-39.4349,0,-417.97,-39.4349,-417.97	1/1:120:0,119,0:0:0:119,0:4179,0:-375.195,-35.8226,0,-375.195,-35.8226,-375.195	1/1:9:0,9,0:0:0:9,0:312,0:-28.3967,-2.70927,0,-28.3967,-2.70927,-28.3967	1/2:109:0,71,36:0:0:71,36:2475,1091:-288.271,-87.0859,-65.7128,-201.146,0,-190.309	1/2:35:0,20,15:0:0:20,15:703,446:-92.6027,-35.6694,-29.6488,-57.252,0,-52.7365	1/1:7:0,7,0:0:0:7,0:252,0:-23.0243,-2.10721,0,-23.0243,-2.10721,-23.0243	1/1:145:0,143,0:0:0:143,0:5091,0:-457.442,-43.0473,0,-457.442,-43.0473,-457.442	1/1:26:0,26,0:0:0:26,0:927,0:-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chr04	5208940	.	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chr04	5212862	.	A	C	140354	PASS	AB=0.497383;ABP=3.29441;AC=145;AF=0.771277;AN=188;AO=6859;CIGAR=1X;DP=9276;DPB=9276;DPRA=0;EPP=14853.7;EPPR=5205.95;GTI=2;LEN=1;MEANALT=1.01064;MQM=45.1095;MQMR=59.8162;NS=94;NUMALT=1;ODDS=0.0616624;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245354;QR=86617;RO=2416;RPL=5;RPP=14853.7;RPPR=5214.6;RPR=6854;RUN=1;SAF=6859;SAP=14897.1;SAR=0;SRF=2415;SRP=5240.61;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:16,16:16:576:16:576:-41.6105,0,-42.542	1/1:82:0,82:0:0:82:2919:-258.567,-24.6845,0	1/1:207:0,207:0:0:207:7379:-649.746,-62.3132,0	1/1:169:2,167:2:72:167:5979:-524.195,-44.0406,0	1/1:64:0,64:0:0:64:2300:-205.237,-19.2659,0	1/1:61:0,61:0:0:61:2180:-192.008,-18.3628,0	0/1:103:70,33:70:2516:33:1171:-73.0829,0,-195.677	1/1:89:0,89:0:0:89:3192:-282.335,-26.7917,0	0/1:90:57,33:57:2052:33:1188:-77.5777,0,-157.859	1/1:70:2,68:2:72:68:2440:-210.188,-14.237,0	1/1:105:0,105:0:0:105:3767:-334.354,-31.6082,0	1/1:129:0,129:0:0:129:4608:-407.224,-38.8329,0	1/1:72:0,72:0:0:72:2580:-226.063,-21.6742,0	1/1:86:0,86:0:0:86:3060:-272.582,-25.8886,0	0/1:79:33,46:33:1188:46:1648:-121.978,0,-83.4169	0/1:101:54,47:54:1936:47:1679:-119.569,0,-144.109	1/1:38:0,38:0:0:38:1368:-121.125,-11.4391,0	0/1:69:46,23:46:1652:23:824:-52.1901,0,-128.197	0/1:71:44,27:44:1584:27:968:-63.5729,0,-121.476	0/1:207:107,100:107:3836:100:3579:-255.87,0,-283.118	0/1:167:63,104:63:2260:104:3699:-279.566,0,-153.39	0/1:126:84,42:84:3001:42:1497:-94.7009,0,-232.374	0/1:74:19,55:19:680:55:1976:-152.958,0,-39.2529	1/1:51:4,47:4:144:47:1679:-135.567,-2.03984,0	0/1:88:29,59:29:1040:59:2120:-162.675,0,-66.5657	0/1:258:132,126:132:4729:126:4485:-317.744,0,-348.091	0/1:213:96,117:96:3440:117:4191:-309.611,0,-245.623	1/1:28:0,28:0:0:28:1004:-89.8967,-8.42884,0	0/1:238:131,107:131:4704:107:3820:-265.341,0,-351.861	0/1:159:105,54:105:3753:54:1912:-122.555,0,-290.104	1/1:68:0,68:0:0:68:2432:-215.788,-20.47,0	1/1:3:0,3:0:0:3:108:-9.98707,-0.90309,0	0/1:32:12,20:12:432:20:711:-53.377,0,-29.5873	1/1:6:0,6:0:0:6:216:-19.0072,-1.80618,0	1/1:7:0,7:0:0:7:252:-22.6312,-2.10721,0	0/1:5:2,3:2:72:3:108:-8.39599,0,-5.33157	1/1:200:0,200:0:0:200:7175:-630.654,-60.206,0	1/1:130:0,130:0:0:130:4649:-414.37,-39.1339,0	0/1:96:62,34:62:2224:34:1224:-79.1443,0,-171.525	0/1:8:2,6:2:72:6:212:-16.5141,0,-4.42848	0/1:110:61,49:61:2181:49:1764:-124.008,0,-163.434	1/1:34:0,34:0:0:34:1224:-109.039,-10.235,0	0/1:157:74,83:74:2664:83:2980:-217.184,0,-192.718	0/1:74:45,29:45:1620:29:1044:-70.2427,0,-123.811	1/1:52:0,52:0:0:52:1859:-164.951,-15.6536,0	0/1:86:36,50:36:1296:50:1792:-132.089,0,-91.053	0/1:91:47,44:47:1684:44:1549:-109.039,0,-124.428	0/1:180:96,84:96:3452:84:3012:-213.335,0,-256.692	1/1:101:0,101:0:0:101:3608:-320.891,-30.404,0	1/1:114:0,114:0:0:114:4075:-361.994,-34.3174,0	1/1:131:0,131:0:0:131:4673:-412.218,-39.4349,0	1/1:8:0,8:0:0:8:288:-25.9779,-2.40824,0	0/1:194:78,116:78:2800:116:4156:-308.173,0,-193.835	0/1:74:25,49:25:885:49:1764:-133.919,0,-57.6857	1/1:2:0,2:0:0:2:72:-6.71863,-0.60206,0	1/1:133:0,133:0:0:133:4734:-420.585,-40.037,0	1/1:49:0,49:0:0:49:1760:-156.779,-14.7505,0	1/1:10:0,10:0:0:10:360:-31.6024,-3.0103,0	0/1:33:14,19:14:504:19:680:-50.4985,0,-35.7595	0/1:102:46,56:46:1625:56:1997:-147.633,0,-115.831	1/1:101:2,99:2:72:99:3552:-307.414,-23.5689,0	1/1:8:0,8:0:0:8:288:-25.6394,-2.40824,0	0/1:149:80,69:80:2861:69:2472:-173.077,0,-212.872	1/1:150:2,148:2:72:148:5298:-462.855,-38.3178,0	0/1:69:50,19:50:1800:19:671:-39.0742,0,-141.509	1/1:84:0,84:0:0:84:2993:-266.436,-25.2865,0	0/1:126:72,54:72:2576:54:1936:-132.901,0,-194.122	0/1:165:108,57:108:3872:57:2039:-131.416,0,-298.962	1/1:63:0,63:0:0:63:2264:-201.343,-18.9649,0	1/1:51:1,50:1:36:50:1783:-150.748,-11.7543,0	1/1:50:0,50:0:0:50:1796:-158.497,-15.0515,0	0/1:47:14,33:14:500:33:1184:-91.0729,0,-31.1859	1/1:180:0,180:0:0:180:6448:-567.928,-54.1854,0	0/1:96:42,53:42:1512:53:1892:-138.495,0,-107.136	1/1:103:0,103:0:0:103:3678:-328.352,-31.0061,0	1/1:209:1,208:1:36:208:7454:-657.756,-59.317,0	0/1:74:42,32:42:1508:32:1144:-79.154,0,-113.723	0/1:86:42,44:42:1500:44:1580:-113.392,0,-109.399	1/1:1:0,1:0:0:1:36:-3.53612,-0.30103,0	1/1:119:1,118:1:36:118:4210:-371.439,-32.2243,0	1/1:85:0,85:0:0:85:3044:-267.991,-25.5876,0	1/1:256:0,256:0:0:256:9191:-816.167,-77.0637,0	1/1:65:0,65:0:0:65:2319:-206.721,-19.567,0	1/1:99:0,99:0:0:99:3548:-314.87,-29.802,0	0/1:79:58,21:58:2084:21:719:-39.1261,0,-164.046	1/1:141:0,141:0:0:141:5068:-449.431,-42.4452,0	0/1:26:17,9:17:612:9:324:-21.1694,0,-47.5867	0/1:80:33,47:33:1184:47:1679:-124.7,0,-82.7813	1/1:82:0,82:0:0:82:2943:-260.174,-24.6845,0	1/1:66:0,66:0:0:66:2357:-209.645,-19.868,0	0/1:371:96,275:96:3444:275:9807:-760.551,0,-198.487	0/1:92:60,32:60:2130:32:1148:-74.7751,0,-164.184	1/1:167:0,167:0:0:167:5960:-527.499,-50.272,0	1/1:120:1,119:1:36:119:4263:-374.745,-32.5253,0
chr04	5280457	.	C	T	136017	PASS	AB=0.499485;ABP=3.01925;AC=143;AF=0.760638;AN=188;AO=6183;CIGAR=1X;DP=8145;DPB=8145;DPRA=43.7796;EPP=12332.1;EPPR=3964.56;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9765;MQMR=59.9847;NS=94;NUMALT=1;ODDS=1.28749;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221194;QR=69718;RO=1958;RPL=6054;RPP=12332.1;RPPR=3972.95;RPR=129;RUN=1;SAF=0;SAP=13429.2;SAR=6183;SRF=1;SRP=4246.07;SRR=1957;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	1/1:108:0,108:0:0:108:3861:-347.684,-32.5112,0	1/1:120:0,120:0:0:120:4292:-386.458,-36.1236,0	1/1:167:1,166:1:36:166:5942:-531.286,-46.6737,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	0/1:155:51,104:51:1813:104:3724:-288.701,0,-116.79	1/1:140:0,140:0:0:140:4998:-449.919,-42.1442,0	0/1:50:15,35:15:540:35:1237:-96.5808,0,-33.885	1/1:128:0,128:0:0:128:4554:-410.019,-38.5318,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:98:0,98:0:0:98:3524:-317.368,-29.5009,0	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:71:39,32:39:1396:32:1148:-82.2567,0,-104.566	0/1:49:19,30:19:684:30:1072:-81.9722,0,-47.1399	1/1:108:0,108:0:0:108:3864:-347.956,-32.5112,0	0/1:63:33,30:33:1168:30:1080:-78.5484,0,-86.4623	0/1:65:35,30:35:1247:30:1080:-77.9463,0,-92.9671	0/1:174:76,98:76:2724:98:3495:-262.374,0,-193.024	0/1:114:50,64:50:1777:64:2281:-171.231,0,-125.894	0/1:55:38,17:38:1356:17:612:-38.8568,0,-105.784	0/1:62:37,25:37:1320:25:884:-61.2145,0,-100.438	1/1:107:2,105:2:72:105:3732:-329.243,-25.3735,0	0/1:58:22,36:22:777:36:1292:-99.124,0,-52.7906	0/1:317:149,168:149:5344:168:5993:-444.048,0,-385.665	0/1:148:80,68:80:2838:68:2425:-173.952,0,-211.106	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:272:131,141:131:4659:141:5036:-371.503,0,-337.592	0/1:100:33,67:33:1172:67:2391:-185.344,0,-75.6845	1/1:104:1,103:1:36:103:3696:-329.241,-27.7088,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:190:1,188:1:36:188:6716:-600.915,-53.6562,0	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	0/1:87:51,36:51:1790:36:1292:-90.3942,0,-135.191	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:106:61,45:61:2171:45:1608:-113.101,0,-163.747	1/1:37:0,37:0:0:37:1328:-119.818,-11.1381,0	0/1:105:38,67:38:1343:67:2400:-184.649,0,-89.5612	0/1:89:40,49:40:1425:49:1752:-131.172,0,-101.754	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	0/1:133:68,65:68:2425:65:2311:-168.213,0,-178.467	0/1:103:51,52:51:1820:52:1872:-137.753,0,-133.075	0/1:146:73,73:73:2597:73:2620:-192.097,0,-190.027	1/1:100:0,100:0:0:100:3561:-320.698,-30.103,0	1/1:129:0,129:0:0:129:4634:-417.221,-38.8329,0	1/1:126:0,126:0:0:126:4520:-406.967,-37.9298,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:116:57,59:57:2027:59:2120:-156.149,0,-147.783	0/1:54:30,24:30:1076:24:864:-61.8269,0,-80.8972	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:141:1,140:1:36:140:4993:-445.916,-38.847,0	1/1:35:1,34:1:36:34:1220:-106.509,-6.93778,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:64:27,37:27:926:37:1324:-100.196,0,-64.3817	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:136:79,56:79:2840:56:2007:-140.052,0,-214.987	1/1:127:0,127:0:0:127:4560:-410.565,-38.2308,0	0/1:73:43,30:43:1540:30:1076:-75.1777,0,-116.918	1/1:65:0,65:0:0:65:2317:-208.789,-19.567,0	0/1:120:58,61:58:2065:61:2158:-158.301,0,-149.937	0/1:111:69,42:69:2472:42:1508:-102.6,0,-189.19	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:66:1,65:1:36:65:2328:-206.07,-16.2697,0	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	1/1:82:0,82:0:0:82:2932:-264.107,-24.6845,0	0/1:54:29,25:29:1040:25:900:-65.0654,0,-77.6587	1/1:176:1,175:1:36:175:6218:-556.115,-49.383,0	1/1:130:1,129:1:36:129:4605:-411.015,-35.5356,0	0/1:118:70,47:70:2484:47:1688:-116.627,0,-188.231	0/1:100:59,41:59:2071:41:1457:-101.321,0,-156.553	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:99:2,97:2:72:97:3435:-302.524,-22.9652,0	1/1:123:1,122:1:36:122:4365:-389.424,-33.4284,0	1/1:211:0,211:0:0:211:7546:-679.176,-63.5173,0	1/1:105:2,103:2:72:103:3689:-325.374,-24.7714,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:82:45,37:45:1599:37:1332:-95.4979,0,-119.515	1/1:119:0,119:0:0:119:4264:-383.936,-35.8226,0	0/1:47:22,25:22:784:25:892:-66.4513,0,-56.7355	0/1:67:43,24:43:1529:24:856:-57.1921,0,-117.732	1/1:77:1,76:1:32:76:2732:-242.923,-19.98,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	0/1:95:47,48:47:1671:48:1720:-126.488,0,-122.079	0/1:64:47,17:47:1668:17:589:-34.0674,0,-131.141	1/1:109:0,109:0:0:109:3896:-350.832,-32.8123,0	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0
chr04	5280503	.	T	A	11639.3	PASS	AB=0.438332;ABP=60.0558;AC=45;AF=0.244565;AN=184;AO=761;CIGAR=1X;DP=4189;DPB=4189;DPRA=0.750522;EPP=1655.5;EPPR=7442.47;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9987;MQMR=59.9985;NS=92;NUMALT=1;ODDS=2.68118;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27171;QR=122491;RO=3426;RPL=0;RPP=1655.5;RPPR=7442.47;RPR=761;RUN=1;SAF=761;SAP=1655.5;SAR=0;SRF=3426;SRP=7442.47;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:10,8:10:352:8:265:-18.753,0,-26.5997	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:43:43,0:43:1522:0:0:0,-12.9443,-137.272	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:46:31,15:31:1108:15:525:-33.7307,0,-86.1836	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:50:29,21:29:1040:21:743:-52.1418,0,-78.8629	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.277	0/1:30:10,20:10:360:20:720:-56.0979,0,-23.7134	0/1:35:15,20:15:536:20:720:-54.5927,0,-38.0388	0/0:51:51,0:51:1808:0:0:0,-15.3525,-162.999	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:24:11,13:11:392:13:468:-35.2349,0,-28.3953	0/1:50:30,20:30:1076:20:705:-48.7213,0,-82.1014	0/1:34:21,13:21:752:13:464:-31.8625,0,-57.7712	0/1:35:17,17:17:608:17:612:-44.8186,0,-44.4573	0/1:24:12,12:12:417:12:428:-31.6341,0,-30.6355	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/1:83:48,35:48:1720:35:1256:-88.3598,0,-130.1	0/1:75:49,26:49:1756:26:932:-61.6216,0,-135.747	0/0:12:11,0:11:396:0:0:0,-3.31133,-35.6229	0/1:49:31,18:31:1112:18:644:-43.5401,0,-85.6409	0/1:59:36,23:36:1296:23:820:-56.3617,0,-99.1832	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/1:6:1,5:1:36:5:168:-13.6447,0,-1.79209	0/1:8:4,4:4:144:4:136:-10.1667,0,-10.9054	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.821	0/0:153:153,0:153:5472:0:0:0,-46.0576,-492.608	0/1:28:9,19:9:324:19:684:-53.4615,0,-21.077	.:.:.:.:.:.:.:.	0/1:40:21,19:21:756:19:684:-49.8491,0,-56.326	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:59:41,18:41:1457:18:640:-40.1685,0,-113.663	0/1:26:12,14:12:423:14:495:-37.0563,0,-30.5783	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:71:38,33:38:1364:33:1188:-85.8555,0,-101.688	0/1:53:21,32:21:748:32:1137:-86.6824,0,-51.6907	0/1:59:37,22:37:1328:22:788:-53.484,0,-102.061	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:83:45,38:45:1612:38:1360:-97.7151,0,-120.385	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:35:34,1:34:1224:1:36:0,-6.93777,-106.869	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:50:37,13:37:1324:13:468:-27.4081,0,-104.411	0/0:104:104,0:104:3702:0:0:0,-31.3071,-333.383	.:.:.:.:.:.:.:.	0/1:53:34,19:34:1220:19:680:-45.5746,0,-94.1522	0/0:104:104,0:104:3709:0:0:0,-31.3071,-334.008	0/1:39:19,20:19:684:20:716:-53.0275,0,-50.1502	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:73:50,23:50:1772:23:824:-52.5081,0,-137.788	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.937	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	0/0:62:62,0:62:2206:0:0:0,-18.6639,-198.804	0/1:34:18,16:18:644:16:572:-41.5784,0,-48.0556	0/0:139:139,0:139:4972:0:0:0,-41.8432,-447.629	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:56:41,15:41:1472:15:540:-32.0789,0,-115.918	0/1:35:18,17:18:632:17:612:-44.8774,0,-46.6707	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/0:84:84,0:84:3002:0:0:0,-25.2865,-270.41	0/1:28:9,19:9:324:19:665:-51.7439,0,-21.077	0/1:43:21,22:21:748:22:780:-57.5787,0,-54.701	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.472	0/0:26:26,0:26:908:0:0:0,-7.82678,-82.0325	0/1:77:48,29:48:1691:29:1040:-70.7351,0,-129.293	0/1:38:14,24:14:500:24:852:-65.5612,0,-33.897	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:33:31,2:31:1112:2:72:0,-3.09727,-93.5546
chr04	5326109	.	A	G	242077	PASS	AB=0.533774;ABP=52.4414;AC=142;AF=0.771739;AN=184;AO=8977;CIGAR=1X;DP=11324;DPB=11324;DPRA=0;EPP=19496.3;EPPR=5090.77;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.8168;MQMR=59.9518;NS=92;NUMALT=1;ODDS=4.18285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317173;QR=83543;RO=2343;RPL=4134;RPP=124.605;RPPR=10.6851;RPR=4843;RUN=1;SAF=4134;SAP=124.605;SAR=4843;SRF=1217;SRP=10.6851;SRR=1126;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:16,21:16:572:21:752:-56.8547,0,-40.6753	1/1:117:0,117:0:0:117:4094:-368.636,-35.2205,0	1/1:189:0,189:0:0:189:6658:-599.25,-56.8947,0	1/1:314:0,313:0:0:313:11052:-994.005,-94.2224,0	1/1:37:0,37:0:0:37:1299:-117.21,-11.1381,0	1/1:26:0,26:0:0:26:921:-83.2048,-7.82678,0	0/1:89:57,32:57:2022:32:1136:-75.7288,0,-155.46	1/1:121:0,121:0:0:121:4268:-384.297,-36.4246,0	0/1:108:59,49:59:2108:49:1711:-121.761,0,-157.478	1/1:179:1,178:1:36:178:6309:-564.303,-50.2861,0	1/1:85:0,85:0:0:85:3019:-271.937,-25.5876,0	1/1:159:0,159:0:0:159:5566:-501.054,-47.8638,0	1/1:153:0,153:0:0:153:5448:-490.332,-46.0576,0	1/1:113:0,113:0:0:113:4006:-360.73,-34.0164,0	0/1:134:55,79:55:1964:79:2801:-211.986,0,-136.697	0/1:90:49,41:49:1732:41:1457:-104.323,0,-129.07	1/1:67:0,67:0:0:67:2358:-212.474,-20.169,0	0/1:64:34,30:34:1220:30:1056:-76.0836,0,-90.8271	0/1:40:17,23:17:608:23:802:-60.4562,0,-43.0108	0/1:200:85,115:85:3034:115:4085:-307.623,0,-213.078	0/1:209:104,105:104:3697:105:3679:-268.385,0,-270.017	0/1:67:51,16:51:1828:16:567:-31.1917,0,-144.631	0/1:94:32,62:32:1152:62:2197:-169.692,0,-75.6933	1/1:130:7,123:7:244:123:4371:-371.263,-16.8345,0	0/1:68:30,38:30:1068:38:1342:-100.597,0,-75.962	0/1:251:103,148:103:3685:148:5217:-394.108,0,-256.292	0/1:195:80,115:80:2872:115:4100:-310.473,0,-200.011	1/1:79:0,78:0:0:78:2753:-247.617,-23.4803,0	0/1:321:154,167:154:5482:167:5921:-436.242,0,-396.878	0/1:91:45,46:45:1608:46:1628:-119.411,0,-117.616	1/1:180:0,180:0:0:180:6331:-569.862,-54.1854,0	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:3:1,2:1:27:2:72:-5.93363,0,-1.79669	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:1,7:1:36:7:244:-19.8912,0,-1.19003	1/1:374:0,374:0:0:374:13254:-1192.12,-112.585,0	1/1:79:0,79:0:0:79:2788:-251.148,-23.7814,0	0/1:75:40,35:40:1440:35:1228:-88.246,0,-107.32	.:.:.:.:.:.:.:.	0/1:128:37,91:37:1328:91:3213:-250.723,0,-81.2904	1/1:34:0,34:0:0:34:1220:-110.102,-10.235,0	0/1:142:61,81:61:2159:81:2843:-213.35,0,-151.831	0/1:131:68,63:68:2414:63:2229:-161.435,0,-178.081	1/1:127:0,127:0:0:127:4466:-402.097,-38.2308,0	0/1:64:23,41:23:824:41:1455:-111.977,0,-55.2174	0/1:89:33,56:33:1158:56:1978:-151.489,0,-77.7334	0/1:185:92,93:92:3285:93:3243:-236.395,0,-240.16	1/1:90:0,90:0:0:90:3195:-287.77,-27.0927,0	1/1:183:0,182:0:0:182:6442:-579.504,-54.7875,0	1/1:92:0,92:0:0:92:3258:-293.44,-27.6948,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:111:53,58:53:1900:58:2072:-153.336,0,-137.864	0/1:74:29,45:29:1040:45:1607:-122.643,0,-71.6381	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:177:0,177:0:0:177:6219:-559.762,-53.2823,0	1/1:46:0,46:0:0:46:1644:-148.118,-13.8474,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:99:50,49:50:1753:49:1720:-125.265,0,-128.247	1/1:169:3,166:3:108:166:5879:-519.138,-40.7989,0	.:.:.:.:.:.:.:.	0/1:352:165,187:165:5883:187:6634:-490.808,0,-423.617	1/1:221:3,218:3:108:218:7676:-679.982,-56.4549,0	0/1:109:48,61:48:1707:61:2152:-161.129,0,-121.103	1/1:86:0,86:0:0:86:3022:-272.192,-25.8886,0	0/1:202:69,133:69:2464:133:4703:-362.609,0,-161.206	0/1:168:98,70:98:3498:70:2468:-171.779,0,-264.457	1/1:73:0,73:0:0:73:2615:-235.597,-21.9752,0	1/1:103:0,103:0:0:103:3651:-328.791,-31.0061,0	1/1:88:0,88:0:0:88:3110:-280.127,-26.4906,0	0/1:43:19,24:19:680:24:855:-64.3259,0,-48.5849	1/1:100:0,100:0:0:100:3488:-314.13,-30.103,0	0/1:162:70,92:70:2499:92:3279:-246.553,0,-176.395	1/1:180:0,180:0:0:180:6343:-570.805,-54.1854,0	1/1:295:0,295:0:0:295:10437:-939.198,-88.8039,0	0/1:41:14,27:14:504:27:955:-73.9222,0,-33.3559	0/1:177:77,100:77:2755:100:3542:-265.698,0,-194.909	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:158:0,158:0:0:158:5589:-503.067,-47.5627,0	1/1:156:1,154:1:36:154:5378:-480.033,-43.4212,0	1/1:311:1,310:1:36:310:10983:-984.669,-90.0221,0	1/1:122:0,122:0:0:122:4326:-389.512,-36.7257,0	1/1:123:0,123:0:0:123:4328:-389.682,-37.0267,0	0/1:106:50,56:50:1763:56:1976:-146.198,0,-127.044	1/1:286:0,286:0:0:286:10076:-906.72,-86.0946,0	0/1:39:13,26:13:460:26:928:-72.0981,0,-29.9952	0/1:115:68,47:68:2415:47:1634:-112.725,0,-182.497	1/1:110:1,109:1:36:109:3856:-343.625,-29.515,0	1/1:80:0,80:0:0:80:2800:-252.144,-24.0824,0	0/1:139:66,73:66:2343:73:2599:-192.255,0,-169.128	0/1:154:104,50:104:3736:50:1765:-112.77,0,-290.081	1/1:250:0,250:0:0:250:8894:-799.418,-75.2575,0	1/1:231:0,231:0:0:231:8119:-730.658,-69.5379,0
chr04	5334775	.	C	A	61802.8	PASS	AB=0.525169;ABP=14.3785;AC=129;AF=0.693548;AN=186;AO=3014;CIGAR=1X;DP=4046;DPB=4046;DPRA=10.6517;EPP=6547.83;EPPR=2243.97;GTI=4;LEN=1;MEANALT=1;MQM=59.8902;MQMR=58.5407;NS=93;NUMALT=1;ODDS=1.08869;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107774;QR=36573;RO=1032;RPL=3014;RPP=6547.83;RPPR=1595.63;RPR=0;RUN=1;SAF=3014;SAP=6547.83;SAR=0;SRF=951;SRP=1595.63;SRR=81;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:79:0,79:0:0:79:2810:-253.067,-23.7814,0	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	1/1:31:0,31:0:0:31:1112:-100.369,-9.33193,0	1/1:38:1,37:1:36:37:1318:-115.465,-7.98465,0	0/1:40:18,22:18:635:22:788:-59.2036,0,-45.4358	1/1:72:0,72:0:0:72:2570:-231.513,-21.6742,0	0/1:41:26,15:26:911:15:536:-36.2326,0,-69.9627	1/1:54:1,53:1:36:53:1904:-168.089,-12.7071,0	0/1:29:5,24:5:176:24:851:-68.1796,0,-6.83689	1/1:18:1,17:1:36:17:608:-51.5975,-1.96405,0	0/1:21:2,19:2:72:19:680:-55.2075,0,-0.515092	1/1:36:0,36:0:0:36:1292:-116.583,-10.8371,0	0/1:30:17,13:17:593:13:468:-33.4287,0,-44.4384	0/1:18:10,8:10:360:8:288:-20.7922,0,-27.3258	1/1:49:3,46:3:104:46:1642:-138.364,-5.04766,0	0/1:20:12,8:12:424:8:279:-19.4269,0,-32.2146	0/1:17:8,9:8:280:9:324:-24.3883,0,-20.4218	0/1:65:28,37:28:976:37:1324:-99.8951,0,-68.5827	0/1:67:32,35:32:1148:35:1251:-92.7258,0,-81.9054	0/1:93:56,37:56:1991:37:1332:-92.1866,0,-151.468	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:44:2,42:2:72:42:1504:-128.818,-6.4086,0	0/1:23:15,8:15:510:8:288:-19.3437,0,-39.1655	0/1:170:87,83:87:3111:83:2944:-214.01,0,-228.985	0/1:83:32,51:32:1113:51:1828:-139.815,0,-75.4868	0/1:11:3,8:3:104:8:284:-22.592,0,-6.30227	0/1:99:61,38:61:2165:38:1357:-92.6166,0,-164.996	0/1:70:30,40:30:1059:40:1436:-108.466,0,-74.5483	1/1:70:1,69:1:36:69:2470:-218.931,-17.4738,0	0/1:3:1,2:1:36:2:72:-5.93321,0,-2.69518	0/1:18:10,8:10:352:8:284:-20.4802,0,-26.4386	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.49798	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.3268	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.0476	1/1:73:2,71:2:72:71:2540:-222.044,-15.1684,0	1/1:88:0,88:0:0:88:3164:-284.982,-26.4906,0	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:48:31,17:31:1116:17:612:-40.964,0,-86.1296	0/1:15:3,12:3:108:12:432:-34.7057,0,-4.57671	0/1:133:65,68:65:2314:68:2414:-177.456,0,-168.483	0/1:11:9,2:9:315:2:72:-3.52539,0,-25.3245	1/1:15:1,14:1:36:14:504:-42.0998,-0.917175,0	0/1:29:14,15:14:504:15:525:-38.8028,0,-36.9682	0/1:41:19,22:19:680:22:779:-58.0022,0,-48.9266	0/1:71:39,32:39:1385:32:1146:-82.0065,0,-103.574	1/1:54:1,53:1:36:53:1892:-166.96,-12.6573,0	1/1:109:0,109:0:0:109:3895:-350.744,-32.8123,0	1/1:91:2,89:2:72:89:3170:-278.673,-20.557,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:62:29,33:29:1025:33:1188:-88.5647,0,-73.7669	0/1:18:4,14:4:144:14:487:-38.7395,0,-7.89508	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:45:1,44:1:36:44:1580:-138.893,-9.94808,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:9:2,7:2:72:7:243:-19.4982,0,-4.09756	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/1:39:14,25:14:483:25:896:-69.2202,0,-31.8099	1/1:63:0,63:0:0:63:2248:-202.584,-18.9649,0	.:.:.:.:.:.:.:.	0/1:71:16,55:16:557:55:1976:-156.742,0,-29.0824	1/1:73:1,72:1:36:72:2572:-228.129,-18.3769,0	0/1:37:13,24:13:464:24:860:-66.5837,0,-30.9594	1/1:48:0,48:0:0:48:1704:-153.643,-14.4494,0	0/1:72:37,35:37:1311:35:1248:-90.9507,0,-96.3059	0/1:43:13,30:13:453:30:1080:-84.5506,0,-28.1102	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:53:3,50:3:100:50:1788:-151.914,-6.66548,0	1/1:12:1,11:1:36:11:391:-31.931,-0.0140851,0	1/1:38:1,37:1:36:37:1324:-115.864,-7.84087,0	0/1:34:12,22:12:419:22:784:-60.6489,0,-27.8077	1/1:53:1,52:1:36:52:1861:-164.034,-12.3563,0	1/1:65:3,62:3:108:62:2215:-189.585,-9.53822,0	0/1:132:62,70:62:2186:70:2512:-186.596,0,-157.267	0/1:55:28,27:28:1004:27:964:-70.5168,0,-72.967	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.1882	1/1:48:2,46:2:72:46:1643:-141.321,-7.61272,0	1/1:43:0,43:0:0:43:1535:-138.415,-12.9443,0	1/1:58:1,57:1:36:57:2043:-180.544,-13.8615,0	1/1:58:1,57:1:36:57:2046:-180.813,-13.8615,0	1/1:31:1,30:1:36:30:1072:-93.2439,-5.78341,0	0/1:44:26,18:26:932:18:648:-45.4066,0,-70.8636	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/1:24:17,7:17:608:7:248:-15.4395,0,-47.8273	0/1:43:14,29:14:492:29:1022:-79.3466,0,-31.6681	1/1:33:1,32:1:32:32:1152:-100.854,-6.79784,0	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.44071	0/1:22:16,6:16:572:6:216:-13.1679,0,-45.1908	0/1:25:17,8:17:593:8:288:-18.7417,0,-46.0373	1/1:48:0,48:0:0:48:1724:-155.401,-14.4494,0	1/1:37:2,35:2:72:35:1251:-106.105,-4.34866,0
chr04	5351006	.	C	A	151183	PASS	AB=0.606932;ABP=472.981;AC=142;AF=0.755319;AN=188;AO=8269;CIGAR=1X;DP=10142;DPB=10142;DPRA=109.043;EPP=17958.9;EPPR=4063.66;GTI=3;LEN=1;MEANALT=1.03226;MQM=26.6887;MQMR=39.3909;NS=94;NUMALT=1;ODDS=6.073;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=295021;QR=66646;RO=1870;RPL=2970;RPP=1427.44;RPPR=4063.66;RPR=5299;RUN=1;SAF=2970;SAP=1427.44;SAR=5299;SRF=0;SRP=4063.66;SRR=1870;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:26,12:26:932:12:424:-18.2373,0,-69.3932	1/1:63:0,63:0:0:63:2259:-155.075,-18.9649,0	1/1:129:0,129:0:0:129:4609:-316.924,-38.8329,0	1/1:366:3,363:3:108:363:12917:-813.696,-100.591,0	1/1:66:0,66:0:0:66:2359:-161.469,-19.868,0	1/1:35:0,35:0:0:35:1256:-86.9652,-10.5361,0	0/1:72:16,56:16:567:56:1981:-106.731,0,-26.5951	1/1:196:0,196:0:0:196:7033:-479.962,-59.0019,0	0/1:109:53,56:53:1851:56:1999:-104.33,0,-127.442	1/1:112:0,112:0:0:112:4016:-259.531,-33.7154,0	1/1:71:0,71:0:0:71:2540:-168.651,-21.3731,0	1/1:67:0,67:0:0:67:2381:-163.739,-20.169,0	1/1:44:0,44:0:0:44:1555:-108.656,-13.2453,0	1/1:65:0,65:0:0:65:2318:-158.765,-19.567,0	0/1:76:26,49:26:927:49:1728:-91.5895,0,-57.0497	0/1:50:27,23:27:964:23:824:-41.7878,0,-68.6475	1/1:31:0,31:0:0:31:1108:-76.4663,-9.33193,0	0/1:37:22,15:22:792:15:532:-26.215,0,-58.1277	0/1:28:16,12:16:572:12:424:-21.0461,0,-40.3908	0/1:222:41,181:41:1464:181:6456:-344.055,0,-58.9646	0/1:128:72,56:72:2565:56:2004:-98.7396,0,-182.438	0/1:119:26,93:26:936:93:3291:-176.011,0,-43.9316	0/1:166:57,109:57:2010:109:3885:-202.269,0,-121.482	0/1:14:3,11:3:108:11:381:-22.4979,0,-5.42932	1/1:75:0,75:0:0:75:2696:-184.161,-22.5773,0	0/1:437:150,287:150:5301:287:10167:-527.291,0,-321.903	0/1:143:68,75:68:2436:75:2692:-141.773,0,-166.04	1/1:32:0,32:0:0:32:1152:-79.0762,-9.63296,0	0/1:312:51,261:51:1794:261:9315:-501.79,0,-54.6577	0/1:159:87,72:87:3101:72:2588:-129.769,0,-218.416	1/1:185:0,185:0:0:185:6567:-424.309,-55.6906,0	0/1:10:3,7:3:108:7:252:-13.8382,0,-6.66227	0/1:6:5,1:5:180:1:36:-0.930022,0,-14.0845	1/1:9:0,9:0:0:9:324:-22.4369,-2.70927,0	1/1:6:0,6:0:0:6:216:-15.0491,-1.80618,0	0/1:13:8,5:8:288:5:180:-8.67314,0,-21.4804	1/1:243:0,243:0:0:243:8643:-561.605,-73.1503,0	1/1:100:0,100:0:0:100:3565:-244.922,-30.103,0	0/1:35:14,21:14:504:21:743:-40.6117,0,-33.6688	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.45449	0/1:88:41,47:41:1476:47:1688:-89.1236,0,-100.725	1/1:26:0,26:0:0:26:913:-63.0921,-7.82678,0	0/1:221:107,114:107:3825:114:4073:-211.842,0,-261.737	0/1:79:29,50:29:1029:50:1796:-91.1122,0,-64.8837	1/1:62:0,62:0:0:62:2216:-142.504,-18.6639,0	0/1:133:52,81:52:1864:81:2877:-144.41,0,-119.425	0/1:105:61,44:61:2184:44:1571:-77.1442,0,-157.975	0/1:202:61,141:61:2180:141:5048:-268.501,0,-125.336	1/1:147:0,147:0:0:147:5260:-339.989,-44.2514,0	1/1:264:1,262:1:36:262:9353:-604.259,-76.0418,0	1/1:167:0,167:0:0:167:5934:-381.498,-50.272,0	1/1:7:0,7:0:0:7:252:-16.951,-2.10721,0	0/1:125:50,75:50:1788:75:2677:-146.387,0,-115.723	0/1:66:21,45:21:733:45:1604:-82.2883,0,-43.4484	1/1:8:0,8:0:0:8:288:-19.9743,-2.40824,0	1/1:85:0,85:0:0:85:3043:-208.527,-25.5876,0	1/1:74:0,74:0:0:74:2625:-171.31,-22.2762,0	1/1:5:0,5:0:0:5:180:-12.1836,-1.50515,0	0/1:17:8,9:8:273:9:324:-17.2714,0,-18.1862	0/1:68:39,29:39:1385:29:1021:-50.4255,0,-99.3614	1/1:116:1,115:1:36:115:4124:-261.615,-31.4959,0	1/1:8:0,8:0:0:8:288:-18.6561,-2.40824,0	0/1:284:79,205:79:2832:205:7270:-384.373,0,-156.788	1/1:301:4,297:4:144:297:10601:-672.827,-77.9427,0	0/1:75:27,48:27:957:48:1724:-95.1724,0,-60.6012	1/1:141:0,141:0:0:141:5017:-326.626,-42.4452,0	0/1:185:38,147:38:1352:147:5236:-282.541,0,-58.9537	0/1:202:89,113:89:3181:113:4047:-199.05,0,-208.993	1/1:36:0,36:0:0:36:1296:-89.214,-10.8371,0	1/1:54:0,54:0:0:54:1927:-132.558,-16.2556,0	1/1:60:0,60:0:0:60:2116:-140.007,-18.0618,0	0/1:40:15,25:15:540:25:891:-46.1388,0,-34.633	1/1:101:0,101:0:0:101:3607:-247.536,-30.404,0	0/1:90:51,39:51:1823:39:1395:-68.9098,0,-131.106	1/1:139:0,138:0:0:138:4931:-339.381,-41.5421,0	1/1:280:0,280:0:0:280:9987:-641.336,-84.2884,0	0/1:182:96,86:96:3421:86:3081:-156.304,0,-239.94	0/1:82:40,42:40:1440:42:1512:-78.6903,0,-99.4646	0/1:14:10,4:10:360:4:144:-5.90953,0,-27.4599	1/1:80:0,80:0:0:80:2868:-196.733,-24.0824,0	1/1:83:1,82:1:36:82:2936:-198.431,-21.5048,0	1/1:339:0,339:0:0:339:12071:-784.788,-102.049,0	1/1:87:0,87:0:0:87:3111:-202.517,-26.1896,0	1/1:98:0,98:0:0:98:3512:-228.949,-29.5009,0	0/1:59:22,37:22:784:37:1328:-68.7685,0,-49.7337	1/1:172:0,172:0:0:172:6152:-399.86,-51.7772,0	0/1:15:11,4:11:392:4:144:-5.6085,0,-29.3127	0/1:42:23,19:23:824:19:684:-34.4194,0,-58.4586	1/1:71:0,71:0:0:71:2552:-174.758,-21.3731,0	1/1:45:0,45:0:0:45:1599:-110.023,-13.5464,0	0/1:110:76,34:76:2699:34:1220:-51.1019,0,-198.824	0/1:74:42,32:42:1508:32:1148:-52.3035,0,-104.403	1/1:290:0,290:0:0:290:10347:-663.337,-87.2987,0	1/1:168:0,168:0:0:168:5996:-390.527,-50.573,0
chr04	6099563	.	T	C	35200.8	PASS	AB=0.516073;ABP=12.0149;AC=43;AF=0.228723;AN=188;AO=2078;CIGAR=1X;DP=7610;DPB=7610;DPRA=1.51049;EPP=4506.65;EPPR=11991.7;GTI=5;LEN=1;MEANALT=1.04167;MQM=59.9639;MQMR=59.9917;NS=94;NUMALT=1;ODDS=0.267265;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74207;QR=197861;RO=5529;RPL=1;RPP=4506.65;RPPR=11991.7;RPR=2077;RUN=1;SAF=2078;SAP=4515.33;SAR=0;SRF=5529;SRP=12009.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:45,33:45:1616:33:1184:-83.3775,0,-122.25	0/0:156:154,2:154:5509:2:72:0,-40.124,-489.098	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/0:238:237,1:237:8501:1:36:0,-68.0469,-761.488	0/0:45:44,1:44:1580:1:36:0,-9.94807,-138.893	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:113:53,60:53:1877:60:2144:-159.211,0,-135.191	0/0:101:100,1:100:3584:1:36:0,-26.8058,-319.168	0/1:128:76,52:76:2709:52:1860:-129.148,0,-205.521	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.359	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:60:28,32:28:1004:32:1144:-85.2077,0,-72.6141	0/1:59:34,25:34:1201:25:892:-62.8343,0,-90.6329	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:137:65,71:65:2336:71:2548:-188.27,0,-169.199	0/1:184:78,106:78:2800:106:3779:-284.919,0,-196.85	0/1:122:30,92:30:1053:92:3271:-257.885,0,-58.3529	0/1:126:59,67:59:2097:67:2395:-177.877,0,-151.068	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5117	0/0:103:101,2:101:3605:2:72:0,-24.1694,-317.818	0/1:191:91,100:91:3245:100:3576:-264.551,0,-234.774	0/1:229:112,117:112:4008:117:4212:-310.322,0,-291.974	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:234:112,122:112:3977:122:4363:-322.403,0,-287.678	0/1:219:116,103:116:4134:103:3676:-265.116,0,-306.316	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	0/0:161:161,0:161:5765:0:0:0,-48.4658,-518.963	0/0:137:137,0:137:4897:0:0:0,-41.2411,-440.881	0/1:32:13,19:13:455:19:680:-51.8962,0,-31.649	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:176:114,62:114:4073:62:2208:-146.003,0,-313.774	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:141:57,84:57:2010:84:3005:-228.231,0,-138.725	0/1:41:21,20:21:743:20:720:-52.7865,0,-54.8511	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/1:125:66,59:66:2368:59:2120:-153.44,0,-175.749	0/1:114:52,62:52:1872:62:2223:-166.016,0,-134.442	0/1:146:75,71:75:2677:71:2536:-184.541,0,-196.034	0/0:94:94,0:94:3365:0:0:0,-28.2968,-303.064	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:85:51,34:51:1817:34:1201:-82.8061,0,-138.222	0/1:68:42,26:42:1504:26:917:-62.3749,0,-115.185	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.048	0/0:79:79,0:79:2831:0:0:0,-23.7814,-255.028	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:1,8:1:36:8:284:-23.1374,0,-0.889005	0/1:106:50,56:50:1781:56:1990:-147.463,0,-128.662	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:155:80,75:80:2876:75:2674:-194.245,0,-212.416	0/0:152:152,0:152:5438:0:0:0,-45.7566,-489.545	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:154:83,71:83:2980:71:2519:-180.603,0,-222.073	0/1:170:44,125:44:1584:125:4448:-349.4,0,-91.7641	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	0/0:185:185,0:185:6588:0:0:0,-55.6905,-593.003	0/1:67:34,33:34:1220:33:1176:-85.9788,0,-89.9378	0/0:120:119,0:119:4246:0:0:0,-35.8226,-382.106	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/1:109:57,52:57:2029:52:1868:-135.587,0,-150.068	0/1:85:36,49:36:1296:49:1747:-131.926,0,-91.3564	0/1:9:3,6:3:108:6:201:-15.7078,0,-7.3659	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:84:84,0:84:3009:0:0:0,-25.2865,-271.039	0/0:225:225,0:225:8061:0:0:0,-67.7317,-725.506	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:38:23,15:23:828:15:532:-36.7739,0,-63.405	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:34:19,15:19:684:15:540:-38.7015,0,-51.6553	0/1:58:28,30:28:1004:30:1071:-79.2419,0,-73.2161	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:44:15,29:15:540:29:1036:-80.3086,0,-35.6912	0/1:58:18,40:18:648:40:1427:-111.267,0,-41.1921	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/0:103:103,0:103:3695:0:0:0,-31.0061,-332.751
chr04	6655928	.	GTG	ATG,ATA	136096	PASS	AB=0.526228,0.471116;ABP=21.0079,24.8375;AC=144,44;AF=0.765957,0.234043;AN=188;AO=4939,1427;CIGAR=1X2M,1X1M1X;DP=6385;DPB=6385;DPRA=68.6452,1.09501;EPP=9810.35,2888.36;EPPR=9.52472;GTI=1;LEN=1,3;MEANALT=1.67742,2.125;MQM=47.5627,34.5711;MQMR=60;NS=94;NUMALT=2;ODDS=0.899435;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=176523,50247;QR=108;RO=3;RPL=107,25;RPP=9818.66,2888.36;RPPR=9.52472;RPR=4832,1402;RUN=1,1;SAF=4938,1427;SAP=10719.2,3101.7;SAR=1,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,22,18:0:0:22,18:776,632:-109.029,-46.432,-39.8093,-62.9289,0,-57.5104	1/1:51:0,50,1:0:0:50,1:1786,36:-159.595,-15.0515,0,-156.975,-12.1064,-156.674	1/1:119:0,118,0:0:0:118,0:4227,0:-378.076,-35.5215,0,-378.076,-35.5215,-378.076	1/1:121:0,121,0:0:0:121,0:4324,0:-384.649,-36.4246,0,-384.649,-36.4246,-384.649	1/1:46:0,46,0:0:0:46,0:1642,0:-146.543,-13.8474,0,-146.543,-13.8474,-146.543	1/1:30:0,30,0:0:0:30,0:1079,0:-96.3138,-9.0309,0,-96.3138,-9.0309,-96.3138	1/2:79:0,43,36:0:0:43,36:1538,1252:-212.745,-88.7853,-75.841,-124.288,0,-113.451	1/1:108:0,106,2:0:0:106,2:3786,70:-338.115,-31.9092,0,-333.608,-27.1174,-333.006	1/2:76:0,35,40:0:0:35,40:1245,1413:-203.798,-103.438,-92.9018,-100.423,0,-88.3815	1/1:76:0,76,0:0:0:76,0:2728,0:-243.175,-22.8783,0,-243.175,-22.8783,-243.175	1/1:39:0,39,0:0:0:39,0:1394,0:-124.297,-11.7402,0,-124.297,-11.7402,-124.297	1/1:105:0,105,0:0:0:105,0:3764,0:-337.23,-31.6082,0,-337.23,-31.6082,-337.23	1/1:78:0,78,0:0:0:78,0:2789,0:-249.32,-23.4803,0,-249.32,-23.4803,-249.32	1/1:41:0,40,0:0:0:40,0:1435,0:-127.75,-12.0412,0,-127.75,-12.0412,-127.75	1/2:58:0,31,27:0:0:31,27:1108,964:-158.069,-68.5503,-59.2184,-89.8518,0,-81.724	1/2:42:0,24,18:0:0:24,18:860,639:-116.76,-47.1203,-39.8956,-69.9762,0,-64.5577	1/1:37:0,37,0:0:0:37,0:1320,0:-118.427,-11.1381,0,-118.427,-11.1381,-118.427	1/2:44:0,27,17:0:0:27,17:963,595:-121.536,-43.9372,-35.8094,-77.9308,0,-72.8133	1/2:41:0,25,16:0:0:25,16:900,556:-113.541,-40.6329,-33.1072,-73.2391,0,-68.4227	1/2:113:0,81,31:0:0:81,31:2901,1085:-310.117,-76.0964,-51.7129,-234.03,0,-224.698	1/2:124:0,61,63:0:0:61,63:2182,2222:-338.759,-162.628,-144.265,-176.468,0,-157.503	1/2:52:0,16,36:0:0:16,36:570,1280:-135.938,-90.1432,-85.3267,-46.1337,0,-35.2966	1/2:65:0,29,36:0:0:29,36:1030,1271:-173.429,-90.6833,-81.9534,-83.0794,0,-72.2424	1/1:23:0,22,1:0:0:22,1:791,36:-70.4558,-6.62266,0,-67.8366,-3.67753,-67.5356	1/1:57:0,57,0:0:0:57,0:2048,0:-182.565,-17.1587,0,-182.565,-17.1587,-182.565	1/2:120:0,68,52:0:0:68,52:2421,1812:-324.209,-129.361,-108.89,-195.176,0,-179.522	1/2:133:0,74,58:0:0:74,58:2630,2052:-362.272,-149.855,-127.579,-212.522,0,-195.062	1/1:37:0,37,0:0:0:37,0:1331,0:-119.06,-11.1381,0,-119.06,-11.1381,-119.06	1/2:150:0,74,76:0:0:74,76:2652,2698:-404.637,-190.436,-168.16,-214.534,0,-191.656	1/2:65:0,33,32:0:0:33,32:1176,1138:-178.365,-83.6734,-73.7394,-95.0286,0,-85.3956	1/1:71:0,71,0:0:0:71,0:2525,0:-225.064,-21.3731,0,-225.064,-21.3731,-225.064	1/1:4:0,4,0:0:0:4,0:144,0:-13.2217,-1.20412,0,-13.2217,-1.20412,-13.2217	1/2:14:0,5,9:0:0:5,9:179,324:-38.1566,-23.9092,-22.4041,-14.5882,0,-11.8789	1/1:2:0,2,0:0:0:2,0:68,0:-6.43575,-0.60206,0,-6.43575,-0.60206,-6.43575	1/1:2:0,2,0:0:0:2,0:72,0:-6.79966,-0.60206,0,-6.79966,-0.60206,-6.79966	1/2:13:0,10,3:0:0:10,3:360,99:-36.8567,-7.61688,-4.60658,-29.5565,0,-28.6534	1/1:163:0,163,0:0:0:163,0:5862,0:-522.097,-49.0679,0,-522.097,-49.0679,-522.097	1/1:77:0,76,0:0:0:76,0:2707,0:-241.432,-22.8783,0,-241.432,-22.8783,-241.432	1/2:61:0,31,30:0:0:31,30:1112,1058:-167.875,-77.7376,-68.4057,-90.4754,0,-81.4445	1/2:2:0,1,1:0:0:1,1:36,36:-5.87655,-2.94513,-2.6441,-3.2724,0,-2.97137	1/2:126:0,85,41:0:0:85,41:3033,1458:-350.165,-105.785,-80.1975,-244.71,0,-232.368	1/1:24:0,24,0:0:0:24,0:856,0:-76.7928,-7.22472,0,-76.7928,-7.22472,-76.7928	1/2:122:0,55,67:0:0:55,67:1975,2340:-328.551,-168.882,-152.325,-160.006,0,-139.837	1/2:52:0,30,22:0:0:30,22:1064,783:-142.091,-56.3516,-47.3207,-86.0709,0,-79.4483	1/1:64:0,64,0:0:0:64,0:2292,0:-204.747,-19.2659,0,-204.747,-19.2659,-204.747	1/2:66:0,32,34:0:0:32,34:1144,1187:-174.676,-82.3214,-72.6884,-92.6832,0,-82.4482	1/2:81:0,31,50:0:0:31,50:1113,1760:-217.304,-127.322,-117.99,-90.3226,0,-75.2711	1/2:134:0,80,54:0:0:80,54:2864,1879:-367.405,-135.95,-111.867,-231.785,0,-215.529	1/1:77:0,77,0:0:0:77,0:2751,0:-245.569,-23.1793,0,-245.569,-23.1793,-245.569	1/1:88:0,88,0:0:0:88,0:3141,0:-279.99,-26.4906,0,-279.99,-26.4906,-279.99	1/1:116:1,115,0:1:36:115,0:4126,0:-364.367,-31.3212,0,-364.668,-34.6185,-367.606	1/1:7:0,7,0:0:0:7,0:241,0:-21.8053,-2.10721,0,-21.8053,-2.10721,-21.8053	1/2:180:0,104,76:0:0:104,76:3724,2664:-494.844,-193.388,-162.081,-301.789,0,-278.91	1/2:58:0,33,25:0:0:33,25:1178,876:-156.061,-61.6562,-51.7222,-94.7307,0,-87.205	1/1:5:0,5,0:0:0:5,0:180,0:-16.4623,-1.50515,0,-16.4623,-1.50515,-16.4623	1/1:112:0,112,0:0:0:112,0:4011,0:-358.283,-33.7154,0,-358.283,-33.7154,-358.283	1/1:20:0,20,0:0:0:20,0:699,0:-62.5286,-6.0206,0,-62.5286,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chr04	7377346	.	A	C	206775	PASS	AB=0.536359;ABP=69.8041;AC=140;AF=0.752688;AN=186;AO=9710;CIGAR=1X;DP=12448;DPB=12448;DPRA=39.0612;EPP=21009.9;EPPR=5915.94;GTI=3;LEN=1;MEANALT=1.06593;MQM=59.9965;MQMR=59.9919;NS=93;NUMALT=1;ODDS=2.86878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=347465;QR=97920;RO=2731;RPL=9;RPP=21009.9;RPPR=5915.94;RPR=9701;RUN=1;SAF=0;SAP=21088;SAR=9710;SRF=0;SRP=5933.3;SRR=2731;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:18,25:18:639:25:900:-68.3767,0,-44.894	1/1:214:0,214:0:0:214:7646:-688.174,-64.4204,0	1/1:241:0,241:0:0:241:8652:-778.67,-72.5482,0	1/1:358:2,355:2:72:355:12719:-1137.74,-100.891,0	1/1:125:1,124:1:36:124:4456:-397.61,-34.0305,0	1/1:98:0,98:0:0:98:3509:-316.018,-29.5009,0	0/1:265:108,157:108:3876:157:5613:-425.518,0,-269.261	1/1:226:1,225:1:36:225:8019:-718.132,-64.4345,0	0/1:95:51,44:51:1817:44:1560:-112.091,0,-135.212	1/1:165:0,165:0:0:165:5916:-532.547,-49.67,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:93:0,93:0:0:93:3325:-299.466,-27.9958,0	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:98:1,97:1:36:97:3473:-309.181,-25.9027,0	0/1:85:45,40:45:1616:40:1440:-104.31,0,-120.142	0/1:63:42,21:42:1512:21:756:-49.4023,0,-117.41	1/1:68:0,68:0:0:68:2440:-219.854,-20.47,0	0/1:46:27,19:27:972:19:684:-48.0429,0,-73.9505	0/1:40:19,21:19:684:21:756:-56.326,0,-49.8491	0/1:392:168,224:168:6036:224:8019:-603.724,0,-425.337	0/1:212:88,124:88:3132:124:4412:-333.433,0,-218.286	0/1:149:92,57:92:3304:57:2048:-139.738,0,-252.725	0/1:50:21,29:21:748:29:1040:-78.8629,0,-52.5938	1/1:166:12,154:12:432:154:5520:-457.703,-10.7498,0	1/1:94:0,94:0:0:94:3364:-302.976,-28.2968,0	0/1:361:176,185:176:6313:185:6625:-487.656,0,-459.397	0/1:222:100,122:100:3592:122:4357:-325.476,0,-256.657	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:420:165,254:165:5898:254:9077:-690.413,0,-404.438	0/1:226:107,119:107:3840:119:4261:-315.634,0,-277.763	1/1:144:0,144:0:0:144:5144:-463.099,-43.3483,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	.:.:.:.:.:.:.:.	0/1:12:6,6:6:208:6:210:-15.6293,0,-15.4467	1/1:241:0,241:0:0:241:8621:-775.881,-72.5482,0	1/1:251:0,251:0:0:251:8948:-805.3,-75.5585,0	0/1:78:39,38:39:1400:38:1353:-98.5302,0,-102.76	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:268:109,159:109:3920:159:5690:-431.539,0,-272.315	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:150:69,81:69:2476:81:2889:-215.091,0,-177.939	0/1:95:48,47:48:1728:47:1692:-123.969,0,-127.207	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	0/1:142:74,68:74:2660:68:2424:-175.668,0,-196.899	0/1:183:91,92:91:3268:92:3275:-239.879,0,-239.251	0/1:275:114,161:114:4070:161:5776:-437.17,0,-283.703	1/1:176:3,173:3:108:173:6185:-546.671,-42.9061,0	1/1:195:0,195:0:0:195:7004:-630.42,-58.7009,0	1/1:271:0,271:0:0:271:9685:-871.597,-81.5791,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:199:102,97:102:3664:97:3473:-252.876,0,-270.058	0/1:87:30,57:30:1076:57:2040:-157.682,0,-70.9632	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:235:1,234:1:36:234:8347:-747.637,-67.1438,0	1/1:36:0,36:0:0:36:1273:-114.861,-10.8371,0	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	0/1:28:11,17:11:387:17:608:-46.6232,0,-26.7371	0/1:115:51,62:51:1824:62:2201:-163.977,0,-130.065	1/1:126:1,125:1:36:125:4477:-399.499,-34.3315,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:235:80,155:80:2865:155:5537:-427.712,0,-187.343	1/1:267:0,267:0:0:267:9584:-862.508,-80.375,0	0/1:106:38,68:38:1364:68:2436:-187.578,0,-91.1515	1/1:145:0,145:0:0:145:5199:-468.048,-43.6494,0	0/1:217:131,86:131:4699:86:3068:-211.026,0,-357.745	0/1:157:109,47:109:3907:47:1688:-104.886,0,-304.502	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:80:0,80:0:0:80:2861:-257.726,-24.0824,0	1/1:85:1,84:1:36:84:3016:-268.072,-21.9893,0	0/1:40:17,23:17:612:23:828:-62.8029,0,-43.3722	1/1:159:1,158:1:36:158:5646:-504.659,-44.2655,0	0/1:64:41,23:41:1459:23:824:-55.2174,0,-112.339	1/1:271:0,271:0:0:271:9685:-871.6,-81.5791,0	1/1:184:1,183:1:36:183:6506:-582.026,-51.7912,0	0/1:154:51,103:51:1832:103:3704:-287.202,0,-118.802	0/1:132:66,66:66:2376:66:2372:-174.002,0,-174.361	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:153:1,151:1:36:151:5432:-485.408,-42.5181,0	1/1:172:2,170:2:72:170:6077:-540.196,-44.9404,0	1/1:362:2,360:2:72:360:12856:-1150.02,-102.136,0	1/1:83:1,82:1:36:82:2948:-261.955,-21.3872,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:81:34,47:34:1220:47:1683:-127.373,0,-85.7234	1/1:162:0,162:0:0:162:5785:-520.763,-48.7669,0	0/1:34:14,20:14:504:20:720:-54.8938,0,-35.4631	0/1:65:29,36:29:1040:36:1292:-97.0168,0,-74.3474	1/1:83:1,82:1:36:82:2933:-260.604,-21.3872,0	1/1:46:0,46:0:0:46:1641:-147.977,-13.8474,0	0/1:132:49,83:49:1746:83:2980:-228.696,0,-117.687	0/1:77:50,27:50:1800:27:972:-64.6186,0,-139.103	1/1:145:0,145:0:0:145:5189:-467.148,-43.6494,0	1/1:123:0,123:0:0:123:4416:-397.611,-37.0267,0
chr04	7380925	.	C	T	195254	PASS	AB=0.505486;ABP=4.03481;AC=144;AF=0.765957;AN=188;AO=7081;CIGAR=1X;DP=9037;DPB=9037;DPRA=0;EPP=3.23386;EPPR=13.6832;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9823;MQMR=60;NS=94;NUMALT=1;ODDS=5.73665;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=252085;QR=68652;RO=1954;RPL=6965;RPP=14388.1;RPPR=4133.9;RPR=116;RUN=1;SAF=3411;SAP=23.5815;SAR=3670;SRF=915;SRP=20.0976;SRR=1039;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:34,30:34:1179:30:1064:-76.8057,0,-87.1449	1/1:84:1,83:1:36:83:2960:-263.033,-21.6882,0	1/1:157:0,157:0:0:157:5599:-504.034,-47.2617,0	1/1:152:0,152:0:0:152:5413:-487.299,-45.7566,0	1/1:37:1,36:1:32:36:1292:-113.384,-7.9388,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:103:52,51:52:1829:51:1828:-133.795,0,-133.883	1/1:171:0,171:0:0:171:6083:-547.574,-51.4761,0	0/1:96:35,61:35:1209:61:2169:-166.573,0,-80.2092	1/1:110:0,110:0:0:110:3899:-351.102,-33.1133,0	1/1:84:1,83:1:36:83:2937:-260.966,-21.6882,0	1/1:151:0,151:0:0:151:5410:-487.03,-45.4555,0	1/1:137:1,136:1:36:136:4842:-432.338,-37.6428,0	1/1:112:0,112:0:0:112:3977:-358.118,-33.7154,0	0/1:95:42,53:42:1487:53:1894:-142.139,0,-105.526	0/1:77:46,31:46:1582:31:1104:-76.4913,0,-119.484	1/1:148:1,147:1:36:147:5241:-468.229,-40.9542,0	0/1:93:41,52:41:1433:52:1872:-140.763,0,-101.265	0/1:79:32,47:32:1116:47:1684:-128.066,0,-76.9632	0/1:121:55,65:55:1932:65:2328:-173.296,0,-137.671	0/1:112:46,66:46:1617:66:2356:-178.584,0,-112.101	0/1:52:34,18:34:1220:18:648:-42.9983,0,-94.4532	0/1:49:23,26:23:795:26:928:-69.0878,0,-57.1163	1/1:72:3,69:3:93:69:2471:-213.966,-12.9974,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/1:159:82,77:82:2902:77:2748:-199.698,0,-213.553	0/1:200:105,95:105:3696:95:3292:-236.286,0,-272.637	1/1:65:0,65:0:0:65:2315:-208.61,-19.567,0	0/1:170:95,75:95:3321:75:2651:-187.659,0,-247.932	0/1:79:37,42:37:1319:42:1499:-111.421,0,-95.2298	1/1:90:0,90:0:0:90:3177:-286.155,-27.0927,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:25:16,9:16:564:9:324:-21.9801,0,-43.5646	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	0/1:19:10,9:10:347:9:324:-23.7863,0,-25.844	1/1:331:0,330:0:0:330:11717:-1054.04,-99.3399,0	1/1:63:0,63:0:0:63:2243:-202.133,-18.9649,0	0/1:113:69,44:69:2442:44:1572:-107.755,0,-186.019	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:165:88,77:88:3106:77:2745:-197.565,0,-230.097	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:101:45,56:45:1555:56:1992:-149.136,0,-109.833	0/1:127:64,63:64:2269:63:2260:-165.431,0,-166.24	1/1:121:0,121:0:0:121:4307:-387.788,-36.4246,0	0/1:61:24,37:24:842:37:1315:-100.288,0,-57.7342	0/1:116:51,65:51:1765:65:2327:-174.77,0,-124.206	0/1:126:55,71:55:1907:71:2472:-184.8,0,-133.975	1/1:79:0,79:0:0:79:2828:-254.74,-23.7814,0	1/1:119:0,119:0:0:119:4206:-378.721,-35.8226,0	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:91:36,55:36:1262:55:1959:-149.191,0,-86.4872	0/1:45:13,32:13:449:32:1148:-90.0835,0,-27.1911	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:113:0,113:0:0:113:3984:-358.754,-34.0164,0	1/1:26:0,26:0:0:26:908:-82.0325,-7.82678,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:10:3,7:3:99:7:252:-20.0187,0,-6.22628	0/1:46:25,21:25:878:21:744:-53.4369,0,-65.4885	1/1:168:3,165:3:104:165:5890:-520.507,-40.8702,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:98:42,56:42:1491:56:2004:-151.133,0,-104.983	1/1:132:2,130:2:72:130:4620:-409.128,-32.8992,0	0/1:62:30,32:30:1059:32:1148:-84.966,0,-76.9566	1/1:94:0,94:0:0:94:3325:-299.467,-28.2968,0	0/1:104:42,62:42:1508:62:2209:-167.766,0,-104.707	0/1:95:54,41:54:1907:41:1430:-100.394,0,-143.309	1/1:69:1,68:1:32:68:2440:-216.656,-17.5718,0	1/1:64:0,64:0:0:64:2259:-203.573,-19.2659,0	1/1:138:0,138:0:0:138:4936:-444.391,-41.5421,0	0/1:14:8,6:8:280:6:216:-15.5761,0,-21.3249	1/1:87:0,87:0:0:87:3098:-279.047,-26.1896,0	0/1:129:59,70:59:2057:70:2516:-187.859,0,-146.567	1/1:171:0,171:0:0:171:6034:-543.166,-51.4761,0	1/1:132:0,132:0:0:132:4727:-425.588,-39.736,0	0/1:86:40,46:40:1419:46:1633:-121.368,0,-102.118	0/1:120:51,69:51:1806:69:2450:-184.631,0,-126.697	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:126:0,126:0:0:126:4512:-406.248,-37.9298,0	1/1:116:0,116:0:0:116:4140:-372.782,-34.9195,0	1/1:148:0,148:0:0:148:5265:-473.989,-44.5524,0	1/1:135:1,134:1:36:134:4812:-429.635,-37.0408,0	1/1:118:0,118:0:0:118:4219:-379.89,-35.5215,0	0/1:136:63,73:63:2241:73:2573:-190.877,0,-161.012	1/1:251:2,249:2:72:249:8887:-792.977,-68.7218,0	0/1:48:33,15:33:1179:15:530:-33.5829,0,-91.9678	0/1:109:54,55:54:1895:55:1954:-143.322,0,-138.015	1/1:126:0,126:0:0:126:4528:-407.685,-37.9298,0	1/1:81:0,81:0:0:81:2872:-258.719,-24.3834,0	0/1:165:96,69:96:3351:69:2460:-171.982,0,-252.138	0/1:135:91,44:91:3176:44:1567:-100.682,0,-245.426	1/1:100:0,100:0:0:100:3515:-316.556,-30.103,0	1/1:220:0,220:0:0:220:7848:-706.347,-66.2266,0
chr04	7385910	.	A	T	259592	PASS	AB=0.484907;ABP=14.2846;AC=144;AF=0.765957;AN=188;AO=9542;CIGAR=1X;DP=12501;DPB=12501;DPRA=0;EPP=976.241;EPPR=563.818;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9959;MQMR=59.9875;NS=94;NUMALT=1;ODDS=3.94381;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=340672;QR=105327;RO=2951;RPL=90;RPP=19948.8;RPPR=6204.26;RPR=9452;RUN=1;SAF=5895;SAP=1153.04;SAR=3647;SRF=1936;SRP=627.182;SRR=1015;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:24,13:24:860:13:468:-31.3215,0,-66.5837	1/1:115:1,114:1:36:114:4096:-365.226,-31.0202,0	1/1:128:0,128:0:0:128:4573:-411.735,-38.5318,0	1/1:385:2,383:2:72:383:13613:-1218.13,-109.06,0	1/1:56:1,55:1:36:55:1980:-174.876,-13.2594,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	0/1:273:136,137:136:4836:137:4908:-359.69,0,-353.217	1/1:143:1,142:1:36:142:5111:-456.531,-39.449,0	0/1:100:51,49:51:1828:49:1753:-127.95,0,-134.698	1/1:96:0,96:0:0:96:3436:-309.453,-28.8989,0	1/1:156:0,156:0:0:156:5584:-502.683,-46.9607,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	0/1:164:74,90:74:2648:90:3216:-240.294,0,-189.198	0/1:64:36,28:36:1292:28:1008:-71.7704,0,-97.3178	1/1:156:0,156:0:0:156:5557:-500.253,-46.9607,0	0/1:58:33,25:33:1165:25:900:-63.8613,0,-87.6953	0/1:46:26,20:26:936:20:716:-50.9203,0,-70.7121	0/1:359:183,176:183:6556:176:6292:-458.305,0,-482.052	0/1:145:67,78:67:2389:78:2785:-207.24,0,-171.616	0/1:110:70,39:70:2482:39:1392:-92.3932,0,-190.461	0/1:145:83,62:83:2976:62:2187:-153.444,0,-224.423	1/1:86:3,83:3:108:83:2984:-258.716,-15.8134,0	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	0/1:536:276,260:276:9814:260:9293:-674.985,0,-721.859	0/1:195:108,87:108:3860:87:3115:-221.875,0,-288.895	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:504:225,278:225:8009:278:9909:-739.978,0,-569.058	0/1:97:44,53:44:1576:53:1877:-140.007,0,-112.932	1/1:296:1,295:1:36:295:10493:-940.697,-85.5066,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:387:1,386:1:36:386:13776:-1236.02,-112.9,0	1/1:100:0,100:0:0:100:3566:-321.146,-30.103,0	0/1:73:44,29:44:1576:29:1040:-71.9392,0,-120.156	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:113:51,62:51:1828:62:2213:-165.417,0,-130.785	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:110:55,55:55:1980:55:1960:-143.562,0,-145.361	0/1:207:91,116:91:3256:116:4140:-310.472,0,-230.948	1/1:132:0,130:0:0:130:4627:-416.255,-39.1339,0	0/1:105:48,57:48:1692:57:2010:-149.564,0,-120.955	0/1:125:69,56:69:2480:56:2012:-143.724,0,-185.824	0/1:237:122,115:122:4380:115:4105:-298.291,0,-323.028	1/1:187:1,186:1:36:186:6644:-594.442,-52.6943,0	1/1:260:0,260:0:0:260:9287:-835.799,-78.2678,0	1/1:155:1,154:1:36:154:5421:-484.431,-43.0614,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:95:57,37:57:2036:37:1332:-91.5257,0,-154.856	0/1:109:53,56:53:1887:56:1995:-147.011,0,-137.295	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:84:0,84:0:0:84:2997:-269.961,-25.2865,0	1/1:124:1,123:1:36:123:4375:-390.328,-33.7294,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:30:20,10:20:708:10:356:-23.3503,0,-55.0147	0/1:67:30,37:30:1065:37:1332:-100.013,0,-75.9907	1/1:262:2,260:2:68:260:9310:-831.407,-72.4122,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:195:97,98:97:3443:98:3475:-254.262,0,-251.381	1/1:313:1,312:1:36:312:11168:-1001.4,-90.6241,0	0/1:78:31,47:31:1108:47:1679:-127.915,0,-76.5488	1/1:166:0,166:0:0:166:5917:-532.64,-49.971,0	0/1:265:128,137:128:4560:137:4892:-360.661,0,-330.796	0/1:179:131,48:131:4680:48:1708:-100.121,0,-367.478	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:79:0,79:0:0:79:2823:-254.309,-23.7814,0	1/1:206:0,206:0:0:206:7313:-658.224,-62.0122,0	0/1:34:19,15:19:684:15:540:-38.7015,0,-51.6553	1/1:87:0,87:0:0:87:3115:-280.569,-26.1896,0	0/1:70:39,31:39:1400:31:1101:-78.3263,0,-105.227	1/1:201:0,201:0:0:201:7182:-646.433,-60.507,0	1/1:270:0,270:0:0:270:9627:-866.387,-81.2781,0	0/1:157:76,80:76:2712:80:2853:-209.686,0,-197.004	0/1:113:60,53:60:2125:53:1900:-137.262,0,-157.501	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:104:2,102:2:72:102:3642:-321.147,-24.4704,0	1/1:63:0,63:0:0:63:2249:-202.671,-18.9649,0	1/1:274:2,272:2:72:272:9675:-863.872,-75.6455,0	1/1:248:1,247:1:36:247:8816:-790.528,-71.7527,0	1/1:138:0,137:0:0:137:4893:-440.162,-41.2411,0	0/1:162:73,89:73:2608:89:3172:-236.938,0,-186.202	1/1:290:0,290:0:0:290:10376:-933.761,-87.2987,0	0/1:40:22,18:22:788:18:633:-45.2539,0,-59.2036	0/1:52:19,33:19:684:33:1188:-91.575,0,-46.2368	1/1:65:0,65:0:0:65:2321:-209.148,-19.567,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:56:26,30:26:936:30:1076:-80.2952,0,-67.7018	0/1:152:110,41:110:3904:41:1468:-86.6008,0,-305.742	1/1:224:0,224:0:0:224:7981:-718.317,-67.4307,0	1/1:252:0,252:0:0:252:9025:-812.227,-75.8596,0
chr04	7385958	.	C	T	157454	PASS	AB=0.493804;ABP=4.43646;AC=145;AF=0.771277;AN=188;AO=7379;CIGAR=1X;DP=9560;DPB=9560;DPRA=51.3871;EPP=16000.3;EPPR=4667.59;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9748;MQMR=59.9972;NS=94;NUMALT=1;ODDS=0.831697;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263928;QR=77765;RO=2180;RPL=7376;RPP=16000.3;RPPR=4667.59;RPR=3;RUN=1;SAF=0;SAP=16026.3;SAR=7379;SRF=0;SRP=4736.82;SRR=2180;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:20,20:20:716:20:716:-52.7265,0,-52.7265	1/1:154:0,154:0:0:154:5504:-495.484,-46.3586,0	1/1:144:0,144:0:0:144:5156:-464.181,-43.3483,0	1/1:206:0,206:0:0:206:7317:-658.582,-62.0122,0	1/1:86:0,86:0:0:86:3066:-276.167,-25.8886,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:145:72,73:72:2588:73:2593:-189.968,0,-189.519	1/1:166:0,166:0:0:166:5903:-529.841,-49.971,0	0/1:116:66,50:66:2333:50:1792:-126.643,0,-175.309	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:126:0,126:0:0:126:4528:-407.685,-37.9298,0	1/1:107:0,107:0:0:107:3836:-345.436,-32.2102,0	1/1:97:0,97:0:0:97:3461:-311.701,-29.1999,0	1/1:132:0,132:0:0:132:4729:-425.767,-39.736,0	0/1:95:45,50:45:1616:50:1792:-132.965,0,-117.132	0/1:85:36,49:36:1296:49:1764:-133.456,0,-91.3564	1/1:114:0,114:0:0:114:4085:-367.834,-34.3174,0	0/1:63:27,36:27:972:36:1296:-97.979,0,-68.833	0/1:81:47,34:47:1692:34:1224:-86.0836,0,-128.183	0/1:211:96,115:96:3444:115:4136:-308.904,0,-246.655	0/1:115:53,62:53:1881:62:2224:-165.806,0,-134.948	0/1:80:52,28:52:1826:28:1004:-66.5797,0,-140.535	0/1:79:41,38:41:1457:38:1355:-98.4683,0,-107.643	1/1:93:4,89:4:144:89:3196:-274.549,-14.6822,0	1/1:93:0,93:0:0:93:3319:-298.431,-27.9958,0	0/1:317:169,148:169:6042:148:5292:-380.989,0,-448.454	0/1:177:93,84:93:3336:84:3000:-216.95,0,-247.175	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:310:120,190:120:4274:190:6797:-518.481,0,-291.517	0/1:97:54,43:54:1913:43:1540:-109.693,0,-143.244	1/1:176:0,176:0:0:176:6284:-565.652,-52.9813,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:183:0,183:0:0:183:6580:-592.277,-55.0885,0	1/1:129:0,129:0:0:129:4582:-412.539,-38.8329,0	0/1:117:65,52:65:2310:52:1855:-132.007,0,-172.937	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:139:69,70:69:2476:70:2516:-184.848,0,-181.25	1/1:51:0,51:0:0:51:1831:-165.071,-15.3525,0	0/1:128:71,57:71:2529:57:2006:-142.278,0,-189.328	0/1:105:46,59:46:1644:59:2120:-159.46,0,-116.64	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:70:29,41:29:1021:41:1467:-111.253,0,-71.1282	0/1:81:31,50:31:1097:50:1796:-137.539,0,-74.6546	0/1:87:53,34:53:1888:34:1205:-82.5643,0,-144.009	1/1:99:0,99:0:0:99:3533:-318.178,-29.802,0	1/1:157:0,157:0:0:157:5632:-506.999,-47.2617,0	1/1:112:0,112:0:0:112:3986:-358.929,-33.7154,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:130:63,67:63:2260:67:2400:-177.122,0,-164.529	0/1:51:24,27:24:856:27:968:-72.0848,0,-62.0086	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:112:1,111:1:36:111:3988:-355.51,-30.1171,0	1/1:52:0,52:0:0:52:1860:-167.679,-15.6536,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:111:54,57:54:1932:57:2040:-150.458,0,-140.742	1/1:152:3,149:3:108:149:5356:-472.095,-35.6814,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:88:43,45:43:1529:45:1590:-116.896,0,-111.41	1/1:168:0,168:0:0:168:6009:-540.908,-50.573,0	0/1:84:49,35:49:1748:35:1256:-88.0588,0,-132.318	1/1:86:0,85:0:0:85:3039:-273.509,-25.5876,0	0/1:166:88,78:88:3148:78:2776:-200.108,0,-233.575	0/1:107:77,30:77:2715:30:1076:-64.9426,0,-212.38	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	1/1:56:0,56:0:0:56:2008:-180.985,-16.8577,0	1/1:121:0,121:0:0:121:4348:-391.493,-36.4246,0	0/1:12:6,6:6:201:6:216:-16.1782,0,-14.8047	1/1:95:0,95:0:0:95:3385:-304.865,-28.5979,0	0/1:62:39,23:39:1385:23:828:-56.1803,0,-106.283	1/1:301:0,301:0:0:301:10719:-964.619,-90.61,0	1/1:165:0,165:0:0:165:5924:-533.266,-49.67,0	0/1:94:49,45:49:1764:45:1593:-115.363,0,-130.747	0/1:137:62,75:62:2209:75:2700:-202.002,0,-157.832	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:94:4,90:4:144:90:3206:-275.447,-14.9832,0	1/1:80:0,80:0:0:80:2857:-257.366,-24.0824,0	1/1:196:1,195:1:36:195:6984:-625.025,-55.4036,0	1/1:158:0,158:0:0:158:5646:-508.258,-47.5627,0	1/1:81:0,81:0:0:81:2903:-261.505,-24.3834,0	0/1:81:31,50:31:1097:50:1792:-137.179,0,-74.6546	1/1:147:0,147:0:0:147:5262:-473.713,-44.2514,0	0/1:56:28,28:28:1008:28:1004:-73.8182,0,-74.1787	0/1:94:42,52:42:1503:52:1849:-138.391,0,-107.267	1/1:91:0,91:0:0:91:3260:-293.621,-27.3937,0	1/1:99:0,99:0:0:99:3549:-319.616,-29.802,0	0/1:157:87,70:87:3105:70:2509:-178.799,0,-232.414	0/1:80:55,25:55:1946:25:900:-57.2386,0,-151.33	1/1:118:0,118:0:0:118:4188:-376.544,-35.5215,0	1/1:138:0,138:0:0:138:4960:-446.546,-41.5421,0
chr04	7533405	.	A	G	27304.6	PASS	AB=0.549982;ABP=64.4413;AC=45;AF=0.241935;AN=186;AO=1582;CIGAR=1X;DP=5433;DPB=5433;DPRA=1.31418;EPP=3394.99;EPPR=8042.72;GTI=4;LEN=1;MEANALT=1.01961;MQM=59.988;MQMR=59.9584;NS=93;NUMALT=1;ODDS=0.611455;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56406;QR=137079;RO=3849;RPL=5;RPP=3394.99;RPPR=8042.72;RPR=1577;RUN=1;SAF=1582;SAP=3438.28;SAR=0;SRF=3849;SRP=8361.01;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/0:81:80,1:80:2860:1:36:0,-20.7852,-254.04	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.175	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:24:23,1:23:813:1:36:0,-3.62644,-69.8908	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8835	0/1:85:34,50:34:1212:50:1783:-135.253,0,-83.8856	0/0:73:72,1:72:2557:1:36:0,-18.3769,-226.781	0/1:71:27,44:27:968:44:1557:-119.047,0,-66.0642	0/0:69:69,0:69:2438:0:0:0,-20.7711,-219.673	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6257	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.683	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:41:23,18:23:828:18:644:-45.9484,0,-62.5019	0/1:38:22,16:22:788:16:576:-40.7358,0,-59.8057	0/0:48:48,0:48:1697:0:0:0,-14.4494,-152.969	0/1:50:28,22:28:1004:22:792:-56.5542,0,-75.6244	0/1:51:22,29:22:750:29:1029:-77.5686,0,-52.4599	0/1:94:34,60:34:1208:60:2145:-165.021,0,-80.7293	0/1:101:39,62:39:1392:62:2187:-166.69,0,-95.175	0/1:69:18,51:18:640:51:1827:-143.939,0,-37.1582	0/1:64:27,37:27:964:37:1328:-100.556,0,-67.8109	0/1:47:42,5:42:1481:5:180:-2.40366,0,-119.364	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/1:139:67,72:67:2389:72:2569:-189.615,0,-173.422	0/1:131:52,79:52:1868:79:2825:-215.052,0,-128.963	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:174:58,116:58:2068:116:4133:-319.775,0,-134.012	0/1:90:44,46:44:1561:46:1633:-120.164,0,-113.687	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.591	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:156:156,0:156:5565:0:0:0,-46.9607,-500.974	0/0:131:130,1:130:4588:1:36:0,-35.8367,-409.486	0/1:49:28,21:28:1000:21:756:-53.6168,0,-75.5649	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:110:38,72:38:1326:72:2584:-199.695,0,-86.5223	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:126:55,71:55:1933:71:2533:-190.29,0,-136.044	0/1:54:29,25:29:1040:25:900:-65.0654,0,-77.6587	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:64:24,40:24:840:40:1432:-109.912,0,-56.6523	0/1:64:28,36:28:1000:36:1288:-96.9496,0,-71.0495	0/1:105:51,54:51:1824:54:1916:-141.106,0,-132.833	0/0:93:93,0:93:3279:0:0:0,-27.9958,-295.328	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:76:76,0:76:2704:0:0:0,-22.8783,-243.605	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:68:23,45:23:828:45:1620:-125.62,0,-54.3741	0/1:18:3,15:3:108:15:510:-40.801,0,-4.65663	0/0:13:12,1:12:428:1:36:0,-0.315115,-35.2605	0/0:48:48,0:48:1697:0:0:0,-14.4494,-153.014	0/0:26:25,1:25:884:1:32:0,-4.62747,-76.6791	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:15:1,14:1:36:14:500:-41.7379,-0.917175,0	0/1:60:33,27:33:1180:27:938:-66.6675,0,-88.3731	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:103:44,59:44:1580:59:2120:-160.062,0,-111.485	0/0:87:87,0:87:3097:0:0:0,-26.1896,-278.957	0/1:59:40,19:40:1424:19:680:-43.7684,0,-110.696	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:164:80,84:80:2837:84:2997:-220.591,0,-206.199	0/1:76:29,47:29:1025:47:1670:-127.707,0,-69.6809	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.104	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:60:60,0:60:2093:0:0:0,-18.0618,-188.639	0/1:33:16,17:16:568:17:608:-45.118,0,-41.5179	0/0:104:104,0:104:3685:0:0:0,-31.3071,-331.797	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/1:64:33,31:33:1173:31:1097:-79.7721,0,-86.6096	0/1:67:26,41:26:928:41:1460:-111.527,0,-63.6692	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:46:45,1:45:1612:1:36:0,-10.2491,-141.772	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:73:73,0:73:2581:0:0:0,-21.9752,-232.539	0/0:59:58,0:58:2072:0:0:0,-17.4597,-186.391	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:60:36,24:36:1292:24:860:-59.66,0,-98.522	0/0:97:96,1:96:3421:1:36:0,-25.6016,-304.505	0/1:22:18,4:18:648:4:144:-6.69096,0,-52.0292	0/1:71:36,35:36:1288:35:1241:-90.6194,0,-94.8505	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.036	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/1:53:32,21:32:1148:21:743:-51.2387,0,-87.6752	0/1:61:20,41:20:712:41:1457:-113.061,0,-46.0438	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.073	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.965
chr04	7533417	.	A	G	78673.5	PASS	AB=0.438227;ABP=94.2248;AC=142;AF=0.755319;AN=188;AO=3808;CIGAR=1X;DP=5385;DPB=5385;DPRA=29.2446;EPP=8271.98;EPPR=3416.57;GTI=3;LEN=1;MEANALT=1.01087;MQM=59.9706;MQMR=59.9537;NS=94;NUMALT=1;ODDS=0.0321312;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135826;QR=55930;RO=1576;RPL=3808;RPP=8271.98;RPPR=3416.57;RPR=0;RUN=1;SAF=3808;SAP=8271.98;SAR=0;SRF=1576;SRP=3425.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:79:1,78:1:32:78:2787:-247.871,-20.5821,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:111:0,111:0:0:111:3984:-358.749,-33.4143,0	1/1:25:1,24:1:36:24:856:-73.7628,-3.92748,0	1/1:20:0,20:0:0:20:711:-64.3152,-6.0206,0	0/1:85:53,32:53:1879:32:1139:-77.23,0,-143.801	1/1:70:1,69:1:32:69:2444:-217.014,-17.8728,0	0/1:72:44,28:44:1564:28:1008:-69.3622,0,-119.377	1/1:69:0,69:0:0:69:2447:-220.485,-20.7711,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:34:0,34:0:0:34:1207:-108.935,-10.235,0	1/1:50:0,50:0:0:50:1785:-160.931,-15.0515,0	1/1:69:0,69:0:0:69:2457:-221.383,-20.7711,0	0/1:38:17,21:17:608:21:752:-56.5671,0,-43.6129	0/1:38:16,22:16:568:22:784:-59.4448,0,-40.0127	1/1:48:0,48:0:0:48:1687:-152.069,-14.4494,0	0/1:49:22,27:22:784:27:947:-70.7933,0,-56.1334	0/1:51:29,22:29:1031:22:788:-55.8923,0,-77.7501	0/1:93:60,33:60:2124:33:1188:-79.2328,0,-163.433	0/1:102:63,39:63:2239:39:1400:-95.5941,0,-171.068	0/1:69:51,18:51:1820:18:644:-37.5195,0,-143.31	0/1:60:35,25:35:1252:25:900:-63.2592,0,-94.9233	1/1:45:4,41:4:144:41:1454:-117.818,-0.232733,0	1/1:37:0,37:0:0:37:1310:-118.2,-11.1381,0	0/1:132:70,62:70:2484:62:2211:-159.517,0,-184.078	0/1:124:75,49:75:2663:49:1760:-121.355,0,-202.589	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:170:112,58:112:3977:58:2061:-134.584,0,-306.947	0/1:89:46,43:46:1639:43:1544:-112.461,0,-121.006	1/1:56:0,56:0:0:56:1990:-179.373,-16.8577,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:152:0,152:0:0:152:5412:-487.211,-45.7566,0	1/1:133:1,132:1:36:132:4728:-422.08,-36.4387,0	0/1:50:21,29:21:722:29:1028:-77.7815,0,-50.246	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:111:73,38:73:2616:38:1360:-89.2863,0,-202.272	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:126:71,55:71:2501:55:1967:-139.375,0,-187.413	0/1:54:25,29:25:881:29:1040:-77.6587,0,-63.3502	1/1:47:0,47:0:0:47:1640:-147.884,-14.1484,0	0/1:63:39,24:39:1396:24:849:-57.7629,0,-106.974	0/1:61:37,24:37:1308:24:860:-59.359,0,-99.6401	0/1:104:55,49:55:1941:49:1756:-127.017,0,-143.657	1/1:90:0,89:0:0:89:3153:-283.636,-26.7917,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:78:0,78:0:0:78:2770:-249.541,-23.4803,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:68:46,22:46:1640:22:792:-51.1356,0,-127.39	0/1:17:14,3:14:504:3:108:-4.95766,0,-40.5806	1/1:13:1,12:1:32:12:432:-36.0219,-0.714077,0	1/1:47:0,47:0:0:47:1673:-150.856,-14.1484,0	1/1:28:1,27:1:32:27:963:-83.7866,-5.22953,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:16:15,1:15:524:1:36:0,-1.2182,-43.8914	0/1:61:29,32:29:1015:32:1148:-85.1939,0,-73.298	1/1:97:0,97:0:0:97:3448:-310.533,-29.1999,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:102:58,44:58:2076:44:1572:-111.067,0,-156.405	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	0/1:60:20,40:20:708:40:1415:-109.585,0,-45.9838	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:165:85,80:85:3000:80:2875:-209.271,0,-220.335	0/1:75:47,28:47:1657:28:1004:-68.0986,0,-126.838	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	1/1:77:0,77:0:0:77:2734:-246.3,-23.1793,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	0/1:33:17,16:17:604:16:576:-42.241,0,-44.7566	1/1:98:0,98:0:0:98:3479:-313.315,-29.5009,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:66:32,34:32:1117:34:1212:-89.5183,0,-80.9674	0/1:61:37,24:37:1308:24:864:-59.7197,0,-99.6587	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:45:1,44:1:36:44:1576:-138.533,-9.94808,0	1/1:22:0,22:0:0:22:785:-70.9737,-6.62266,0	1/1:76:0,76:0:0:76:2713:-244.412,-22.8783,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:47:0,47:0:0:47:1678:-151.306,-14.1484,0	0/1:60:24,36:24:864:36:1292:-98.522,0,-60.0208	1/1:97:0,97:0:0:97:3440:-309.813,-29.1999,0	0/1:23:5,18:5:172:18:625:-49.6497,0,-8.89428	0/1:72:37,35:37:1320:35:1220:-88.4263,0,-97.3216	1/1:52:0,52:0:0:52:1863:-167.945,-15.6536,0	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	0/1:53:21,32:21:752:32:1136:-86.5943,0,-52.0517	0/1:61:39,22:39:1396:22:784:-52.5211,0,-107.576	1/1:58:0,58:0:0:58:2057:-185.4,-17.4597,0	1/1:72:0,72:0:0:72:2567:-231.28,-21.6742,0
chr04	7741894	.	C	T	119628	PASS	AB=0.485864;ABP=10.3161;AC=143;AF=0.760638;AN=188;AO=5745;CIGAR=1X;DP=7925;DPB=7925;DPRA=0;EPP=12478.1;EPPR=4732.48;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.6876;MQMR=59.9137;NS=94;NUMALT=1;ODDS=1.24138;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205783;QR=78052;RO=2178;RPL=0;RPP=12478.1;RPPR=4732.48;RPR=5745;RUN=1;SAF=5745;SAP=12478.1;SAR=0;SRF=2178;SRP=4732.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:40,26:40:1436:26:928:-62.7777,0,-109.656	1/1:63:0,62:0:0:62:2193:-197.275,-18.6639,0	1/1:155:0,155:0:0:155:5545:-499.156,-46.6597,0	1/1:179:1,178:1:36:178:6404:-571.678,-50.2861,0	1/1:39:0,39:0:0:39:1392:-125.534,-11.7402,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:132:81,51:81:2908:51:1836:-125.763,0,-222.219	1/1:147:0,147:0:0:147:5261:-473.625,-44.2514,0	0/1:88:46,42:46:1640:42:1504:-109.164,0,-121.395	1/1:85:1,84:1:36:84:2999:-266.356,-21.9893,0	1/1:42:0,42:0:0:42:1504:-135.654,-12.6433,0	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0	1/1:53:0,53:0:0:53:1904:-171.624,-15.9546,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:50:24,26:24:864:26:936:-69.508,0,-63.0311	0/1:62:33,29:33:1184:29:1044:-75.6109,0,-88.2045	1/1:33:0,33:0:0:33:1188:-107.218,-9.93399,0	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:26:12,14:12:432:14:504:-37.7846,0,-31.3944	0/1:274:142,132:142:5096:132:4716:-342.056,0,-376.294	0/1:83:43,40:43:1525:40:1440:-104.843,0,-112.551	0/1:217:138,79:138:4960:79:2836:-190.119,0,-381.222	0/1:100:69,31:69:2468:31:1116:-70.6441,0,-192.225	0/1:49:7,42:7:252:42:1508:-121.256,0,-8.27849	1/1:80:0,80:0:0:80:2863:-257.902,-24.0824,0	0/1:205:89,116:89:3200:116:4160:-312.846,0,-226.511	0/1:146:60,86:60:2160:86:3065:-232.072,0,-150.716	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:252:120,132:120:4292:132:4732:-350.036,0,-310.598	0/1:83:34,49:34:1212:49:1764:-134.036,0,-84.3962	1/1:97:0,97:0:0:97:3472:-312.584,-29.1999,0	0/1:17:13,4:13:468:4:125:-6.43958,0,-37.3421	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:11:0,11:0:0:11:396:-35.9541,-3.31133,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:124:0,124:0:0:124:4460:-401.539,-37.3277,0	1/1:161:1,160:1:36:160:5711:-509.767,-44.8676,0	0/1:38:13,25:13:464:25:900:-69.8819,0,-30.6584	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:121:69,52:69:2476:52:1861:-131.288,0,-186.669	1/1:43:0,43:0:0:43:1544:-138.851,-12.9443,0	0/1:168:82,86:82:2940:86:3039:-223.108,0,-214.261	0/1:72:25,47:25:900:47:1692:-130.795,0,-59.6469	1/1:49:0,49:0:0:49:1745:-157.323,-14.7505,0	0/1:124:77,46:77:2756:46:1656:-112.066,0,-211.04	0/1:159:74,85:74:2656:85:3056:-227.392,0,-191.414	0/1:248:116,132:116:4172:132:4736:-351.364,0,-300.56	1/1:104:0,104:0:0:104:3728:-335.718,-31.3071,0	1/1:143:0,143:0:0:143:5128:-461.411,-43.0473,0	1/1:84:0,84:0:0:84:3000:-270.228,-25.2865,0	1/1:12:0,12:0:0:12:432:-39.151,-3.61236,0	0/1:147:72,75:72:2565:75:2681:-197.281,0,-186.847	0/1:46:29,17:29:1040:17:608:-41.2046,0,-80.067	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:157:0,157:0:0:157:5587:-501.661,-47.2617,0	1/1:37:0,37:0:0:37:1313:-118.459,-11.1381,0	1/1:8:0,8:0:0:8:288:-25.4008,-2.40824,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:42:32,10:32:1136:10:360:-20.101,0,-89.9024	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	1/1:7:0,7:0:0:7:252:-22.7984,-2.10721,0	0/1:148:75,73:75:2680:73:2616:-191.132,0,-196.893	1/1:146:5,141:5:180:141:5063:-439.168,-27.3983,0	0/1:35:16,19:16:576:19:680:-50.9931,0,-41.6389	1/1:146:2,144:2:72:144:5143:-456.153,-37.1137,0	0/1:237:121,116:121:4306:116:4142:-301.38,0,-316.369	0/1:142:93,49:93:3332:49:1756:-115.564,0,-256.724	1/1:32:0,32:0:0:32:1152:-103.957,-9.63296,0	1/1:38:1,37:1:36:37:1332:-116.576,-7.84087,0	1/1:37:0,37:0:0:37:1328:-119.664,-11.1381,0	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	1/1:80:0,80:0:0:80:2859:-257.547,-24.0824,0	0/1:93:54,39:54:1936:39:1396:-97.9387,0,-146.512	1/1:89:0,89:0:0:89:3189:-286.411,-26.7917,0	1/1:115:0,115:0:0:115:4109:-369.979,-34.6185,0	0/1:112:55,57:55:1976:57:2044:-150.516,0,-144.399	0/1:78:32,46:32:1152:46:1656:-125.803,0,-80.5098	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:128:1,127:1:36:127:4552:-406.246,-34.9336,0	1/1:140:0,140:0:0:140:5004:-450.385,-42.1442,0	1/1:180:2,178:2:72:178:6400:-568.46,-47.3487,0	1/1:24:0,24:0:0:24:864:-78.0792,-7.22472,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2753	1/1:113:0,113:0:0:113:4052:-364.7,-34.0164,0	0/1:15:7,8:7:252:8:288:-21.6208,0,-18.5135	0/1:47:22,25:22:788:25:896:-66.8073,0,-57.0964	1/1:51:0,51:0:0:51:1832:-165.154,-15.3525,0	1/1:30:1,29:1:36:29:1040:-90.1865,-5.43263,0	0/1:74:31,43:31:1112:43:1544:-116.954,0,-78.0867	0/1:76:46,30:46:1648:30:1076:-74.1103,0,-125.73	1/1:96:0,96:0:0:96:3402:-305.886,-28.8989,0	1/1:64:0,64:0:0:64:2304:-207.617,-19.2659,0
chr04	7741954	.	C	T	72001.1	PASS	AB=0.47949;ABP=13.6102;AC=140;AF=0.752688;AN=186;AO=3587;CIGAR=1X;DP=5118;DPB=5118;DPRA=6.94293;EPP=7792.08;EPPR=3318.85;GTI=3;LEN=1;MEANALT=1.04348;MQM=59.8511;MQMR=59.9548;NS=93;NUMALT=1;ODDS=0.807118;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126723;QR=53724;RO=1527;RPL=3587;RPP=7792.08;RPPR=3301.5;RPR=0;RUN=1;SAF=3587;SAP=7792.08;SAR=0;SRF=1525;SRP=3301.5;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:30,8:30:1052:8:280:-12.8962,0,-83.5513	1/1:29:0,29:0:0:29:1028:-92.833,-8.72987,0	1/1:84:0,84:0:0:84:2996:-269.855,-25.2865,0	1/1:96:1,95:1:36:95:3376:-300.46,-25.3006,0	1/1:25:0,25:0:0:25:882:-79.6965,-7.52575,0	.:.:.:.:.:.:.:.	0/1:86:53,32:53:1856:32:1152:-78.1253,0,-141.458	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	0/1:54:26,28:26:924:28:996:-73.6993,0,-67.2139	1/1:41:2,39:2:72:39:1387:-118.291,-5.50551,0	1/1:29:0,29:0:0:29:1013:-91.4804,-8.72987,0	1/1:45:0,45:0:0:45:1576:-142.13,-13.5464,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:38:18,20:18:620:20:704:-52.2454,0,-44.681	0/1:47:26,21:26:902:21:734:-52.232,0,-67.3445	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:19:11,8:11:384:8:284:-20.1838,0,-29.1751	0/1:19:8,11:8:284:11:392:-29.9005,0,-20.1838	0/1:153:83,70:83:2942:70:2483:-177.666,0,-218.957	0/1:50:29,21:29:1005:21:748:-52.5938,0,-75.707	0/1:192:124,68:124:4392:68:2402:-158.636,0,-337.657	0/1:57:42,15:42:1483:15:540:-31.7778,0,-116.605	0/1:35:6,29:6:201:29:1027:-82.2061,0,-7.88099	1/1:47:0,47:0:0:47:1645:-148.333,-14.1484,0	0/1:177:75,102:75:2633:102:3635:-274.073,0,-183.933	0/1:76:32,44:32:1127:44:1555:-117.361,0,-78.8592	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:222:107,115:107:3771:115:4068:-299.354,0,-272.762	0/1:54:26,28:26:901:28:964:-70.8121,0,-65.142	1/1:61:0,61:0:0:61:2160:-194.589,-18.3628,0	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:6:1,5:1:36:5:172:-14.0118,0,-1.79209	1/1:110:1,109:1:36:109:3857:-343.73,-29.515,0	1/1:107:0,107:0:0:107:3754:-338.035,-32.2102,0	0/1:26:8,18:8:284:18:636:-49.7413,0,-18.0766	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:84:45,39:45:1582:39:1371:-98.3779,0,-117.382	1/1:31:0,31:0:0:31:1073:-96.8147,-9.33193,0	0/1:92:45,47:45:1574:47:1654:-121.427,0,-114.254	0/1:60:23,37:23:771:37:1307:-99.7791,0,-51.6372	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	0/1:109:70,39:70:2474:39:1387:-92.3073,0,-190.1	0/1:117:53,64:53:1876:64:2280:-170.242,0,-133.89	0/1:132:68,64:68:2403:64:2228:-160.677,0,-176.791	1/1:44:0,44:0:0:44:1544:-139.249,-13.2453,0	1/1:88:0,88:0:0:88:3136:-282.467,-26.4906,0	1/1:78:0,78:0:0:78:2754:-248.103,-23.4803,0	1/1:7:0,7:0:0:7:252:-22.9583,-2.10721,0	0/1:98:48,49:48:1720:49:1752:-128.404,0,-125.526	0/1:41:25,16:25:879:16:572:-39.4712,0,-67.0846	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:101:0,101:0:0:101:3514:-316.21,-30.404,0	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:28:21,7:21:743:7:252:-14.6001,0,-58.7645	1/1:54:0,54:0:0:54:1895:-170.825,-16.2556,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:126:59,67:59:2078:67:2375:-176.075,0,-149.36	1/1:85:4,81:4:144:81:2871:-245.255,-12.2739,0	0/1:20:11,9:11:387:9:303:-21.5761,0,-29.1453	1/1:88:0,88:0:0:88:3099:-279.124,-26.4906,0	0/1:174:85,89:85:3002:89:3145:-230.897,0,-218.033	0/1:98:61,37:61:2123:37:1301:-87.8881,0,-161.677	1/1:22:0,22:0:0:22:762:-68.8976,-6.62266,0	1/1:22:1,21:1:36:21:756:-64.7689,-3.02439,0	1/1:30:0,30:0:0:30:1055:-94.942,-9.0309,0	0/1:11:5,6:5:167:6:216:-16.4792,0,-12.0471	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:51:28,22:28:1000:22:780:-55.1119,0,-74.9041	1/1:68:0,67:0:0:67:2365:-212.895,-20.169,0	1/1:45:0,45:0:0:45:1557:-140.408,-13.5464,0	0/1:65:32,33:32:1128:33:1176:-86.5808,0,-82.2613	0/1:41:15,26:15:528:26:932:-71.8381,0,-35.5091	0/1:4:1,3:1:32:3:104:-8.49868,0,-1.99519	1/1:67:1,66:1:36:66:2313:-204.829,-16.5707,0	1/1:70:0,70:0:0:70:2484:-223.814,-21.0721,0	1/1:106:0,106:0:0:106:3752:-337.881,-31.9092,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:31:0,31:0:0:31:1086:-98.0476,-9.33193,0	0/1:18:11,7:11:387:7:248:-17.2457,0,-29.7474	1/1:67:1,66:1:36:66:2260:-200.046,-16.5707,0	0/1:12:6,6:6:208:6:216:-16.1782,0,-15.4467	0/1:30:15,15:15:524:15:523:-38.367,0,-38.4587	1/1:29:0,29:0:0:29:1028:-92.8154,-8.72987,0	1/1:22:1,21:1:36:21:739:-63.2341,-3.02439,0	0/1:53:19,34:19:676:34:1190:-91.4398,0,-45.2134	0/1:56:36,20:36:1240:20:703:-46.5768,0,-95.0411	1/1:42:0,42:0:0:42:1482:-133.673,-12.6433,0	1/1:40:0,40:0:0:40:1411:-127.287,-12.0412,0
chr04	7741978	.	GTT	GTC,ATC	152212	PASS	AB=0.450651,0.540401;ABP=81.0232,55.2976;AC=144,44;AF=0.765957,0.234043;AN=188;AO=5257,2004;CIGAR=2M1X,1X1M1X;DP=7326;DPB=7326;DPRA=0,1.20837;EPP=11418.4,4345.96;EPPR=5.18177;GTI=3;LEN=1,3;MEANALT=2.21277,2.73077;MQM=59.9692,59.8623;MQMR=60;NS=94;NUMALT=2;ODDS=0.340957;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=186440,68843;QR=28;RO=1;RPL=0,0;RPP=11418.4,4354.64;RPPR=5.18177;RPR=5257,2004;RUN=1,1;SAF=0,1;SAP=11418.4,4345.96;SAR=5257,2003;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,25,28:0:0:25,28:892,957:-150.731,-78.0067,-70.481,-73.0739,0,-64.6451	1/1:58:0,57,1:0:0:57,1:2021,36:-181.801,-17.1587,0,-178.864,-13.8615,-178.563	1/1:89:0,87,0:0:0:87,0:3039,0:-273.442,-26.1896,0,-273.442,-26.1896,-273.442	1/1:101:0,100,0:0:0:100,0:3572,0:-321.435,-30.103,0,-321.435,-30.103,-321.435	1/1:53:0,51,1:0:0:51,1:1789,36:-160.981,-15.3525,0,-158.044,-12.3602,-157.743	1/1:50:0,50,0:0:0:50,0:1788,0:-161.203,-15.0515,0,-161.203,-15.0515,-161.203	1/2:125:0,69,54:0:0:69,54:2459,1853:-351.026,-150.579,-129.808,-200.584,0,-184.328	1/1:95:0,92,0:0:0:92,0:3203,0:-288.092,-27.6948,0,-288.092,-27.6948,-288.092	1/2:89:0,44,43:0:0:44,43:1541,1507:-248.124,-122.738,-109.492,-125.498,0,-112.554	1/1:75:0,75,0:0:0:75,0:2660,0:-239.643,-22.5773,0,-239.643,-22.5773,-239.643	1/1:48:0,48,0:0:0:48,0:1697,0:-153.015,-14.4494,0,-153.015,-14.4494,-153.015	1/1:73:0,73,0:0:0:73,0:2577,0:-232.179,-21.9752,0,-232.179,-21.9752,-232.179	1/1:52:0,51,0:0:0:51,0:1815,0:-163.339,-15.3525,0,-163.339,-15.3525,-163.339	1/1:94:1,93,0:1:28:93,0:3312,0:-295.498,-25.4971,0,-295.799,-27.9958,-298.016	1/2:50:0,23,27:0:0:23,27:793,924:-139.758,-75.3406,-68.417,-64.7612,0,-56.6334	1/2:45:0,15,30:0:0:15,30:507,1042:-126.149,-85.0571,-80.5417,-41.433,0,-32.4021	1/1:59:0,59,0:0:0:59,0:2103,0:-189.539,-17.7608,0,-189.539,-17.7608,-189.539	1/2:53:0,21,32:0:0:21,32:752,1058:-147.175,-85.8377,-79.5161,-61.6846,0,-52.0517	1/2:36:0,17,19:0:0:17,19:612,671:-104.934,-54.9944,-49.8769,-50.2959,0,-44.5764	1/2:200:0,98,101:0:0:98,101:3508,3505:-570.978,-284.901,-255.4,-286.07,0,-255.666	1/2:101:0,55,45:0:0:55,45:1971,1586:-290.024,-129.27,-112.713,-160.895,0,-147.349	1/2:115:0,24,91:0:0:24,91:846,3079:-318.831,-249.946,-242.722,-69.2339,0,-41.8402	1/2:104:0,41,62:0:0:41,62:1467,2106:-290.563,-170.93,-158.587,-119.77,0,-101.106	1/1:87:0,83,3:0:0:83,3:2940,106:-264.506,-24.9855,0,-255.874,-16.2753,-254.97	1/1:56:0,56,0:0:0:56,0:1999,0:-180.158,-16.8577,0,-180.158,-16.8577,-180.158	1/2:173:0,85,85:0:0:85,85:3018,2915:-482.589,-236.676,-211.088,-245.938,0,-220.35	1/2:172:0,58,113:0:0:58,113:2077,3926:-488.628,-319.242,-301.782,-169.459,0,-135.443	1/1:40:0,39,0:0:0:39,0:1365,0:-122.786,-11.7402,0,-122.786,-11.7402,-122.786	1/2:191:0,78,111:0:0:78,111:2787,3830:-538.405,-311.167,-287.686,-227.269,0,-193.855	1/2:120:0,53,66:0:0:53,66:1894,2225:-334.824,-180.389,-164.434,-154.531,0,-134.663	1/1:110:0,110,0:0:0:110,0:3920,0:-352.995,-33.1133,0,-352.995,-33.1133,-352.995	1/2:10:0,5,5:0:0:5,5:180,172:-29.0073,-14.3123,-12.8071,-15.0469,0,-13.5418	1/2:13:0,4,9:0:0:4,9:144,324:-38.5463,-26.7966,-25.5925,-12.1095,0,-9.40023	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:3:0,3,0:0:0:3,0:97,0:-9.04999,-0.90309,0,-9.04999,-0.90309,-9.04999	1/2:13:0,6,7:0:0:6,7:216,250:-38.3653,-20.7395,-18.9333,-17.9843,0,-15.8771	1/1:175:0,174,0:0:0:174,0:6161,0:-554.36,-52.3792,0,-554.36,-52.3792,-554.36	1/1:118:0,116,0:0:0:116,0:4111,0:-369.944,-34.9195,0,-369.944,-34.9195,-369.944	1/2:75:0,25,49:0:0:25,49:879,1684:-208.215,-136.663,-129.137,-71.5416,0,-56.7912	1/2:3:0,1,2:0:0:1,2:36,64:-8.42677,-5.47604,-5.17501,-3.29724,0,-2.69518	1/2:100:0,41,59:0:0:41,59:1468,2007:-282.864,-163.14,-150.798,-120.074,0,-102.313	1/1:22:0,22,0:0:0:22,0:779,0:-70.4327,-6.62266,0,-70.4327,-6.62266,-70.4327	1/2:121:0,59,60:0:0:59,60:2101,2108:-342.875,-171.631,-153.87,-171.3,0,-153.238	1/2:89:0,43,46:0:0:43,46:1528,1586:-253.698,-129.179,-116.235,-124.869,0,-111.021	1/1:54:0,54,0:0:0:54,0:1909,0:-172.085,-16.2556,0,-172.085,-16.2556,-172.085	1/2:92:0,45,45:0:0:45,45:1597,1523:-253.622,-123.495,-109.949,-130.166,0,-116.619	1/2:84:0,35,49:0:0:35,49:1252,1662:-237.138,-135.039,-124.503,-102.449,0,-87.6986	1/2:156:0,77,78:0:0:77,78:2743,2668:-440.217,-216.632,-193.453,-223.682,0,-200.202	1/1:89:0,88,1:0:0:88,1:3123,36:-280.936,-26.4906,0,-277.999,-23.1934,-277.697	1/1:85:0,84,0:0:0:84,0:2965,0:-266.85,-25.2865,0,-266.85,-25.2865,-266.85	1/1:114:0,113,0:0:0:113,0:4011,0:-360.9,-34.0164,0,-360.9,-34.0164,-360.9	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:118:0,62,55:0:0:62,55:2192,1916:-334.375,-155.864,-137.201,-178.579,0,-162.023	1/2:53:0,33,20:0:0:33,20:1175,688:-151.992,-56.2172,-46.2832,-96.123,0,-90.1024	1/1:18:0,17,0:0:0:17,0:595,0:-53.6211,-5.11751,0,-53.6211,-5.11751,-53.6211	1/1:81:0,80,0:0:0:80,0:2867,0:-257.939,-24.0824,0,-257.939,-24.0824,-257.939	1/1:39:0,37,1:0:0:37,1:1309,36:-117.802,-11.1381,0,-11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chr04	7973115	.	T	A	34659.5	PASS	AB=0.542264;ABP=46.3278;AC=42;AF=0.225806;AN=186;AO=1519;CIGAR=1X;DP=6432;DPB=6432;DPRA=0.999017;EPP=3284.13;EPPR=10651.9;GTI=0;LEN=1;MEANALT=1;MQM=59.8512;MQMR=59.956;NS=93;NUMALT=1;ODDS=2.52453;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53726;QR=175121;RO=4912;RPL=677;RPP=41.9295;RPPR=33.8212;RPR=842;RUN=1;SAF=675;SAP=43.8394;SAR=844;SRF=2324;SRP=33.8212;SRR=2588;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:21,5:21:752:5:180:-8.72528,0,-60.1795	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:53:30,23:30:1080:23:828:-58.879,0,-81.5587	0/0:77:76,1:76:2720:1:36:0,-19.581,-241.445	0/1:84:42,42:42:1504:42:1478:-108.02,0,-110.368	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/0:77:77,0:77:2740:0:0:0,-23.1793,-246.844	0/0:183:183,0:183:6480:0:0:0,-55.0885,-583.186	0/0:147:147,0:147:5218:0:0:0,-44.2514,-469.762	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.155	0/1:146:70,76:70:2475:76:2654:-195.151,0,-179.054	0/1:87:43,44:43:1536:44:1584:-116.649,0,-112.343	0/0:55:55,0:55:1942:0:0:0,-16.5566,-175.055	0/1:56:28,28:28:1000:28:966:-70.3828,0,-73.4577	0/1:60:27,33:27:960:33:1167:-87.2746,0,-68.6545	0/1:54:28,26:28:993:26:923:-67.1265,0,-73.4269	0/1:82:34,48:34:1208:48:1724:-130.744,0,-84.3416	0/1:20:4,16:4:144:16:572:-45.7928,0,-7.29302	0/1:47:29,18:29:1036:18:648:-44.5035,0,-79.4055	0/0:32:31,1:31:1108:1:36:0,-6.03839,-96.3066	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:128:56,72:56:2000:72:2543:-190.587,0,-141.742	0/1:105:50,55:50:1800:55:1960:-145.063,0,-130.669	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.947	0/1:107:57,50:57:2036:50:1777:-128,0,-151.302	0/1:47:20,27:20:712:27:953:-71.9349,0,-50.2582	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/0:326:326,0:326:11573:0:0:0,-98.1358,-1041.45	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:65:38,27:38:1359:27:960:-67.1493,0,-103.043	0/1:7:6,1:6:201:1:36:-1.49107,0,-16.3098	0/1:77:28,49:28:999:49:1723:-132.163,0,-67.0452	0/0:34:33,1:33:1176:1:36:0,-6.63674,-102.549	0/1:57:28,29:28:987:29:1012:-74.2252,0,-71.9843	0/1:115:55,60:55:1956:60:2088:-153.563,0,-141.697	0/0:100:100,0:100:3567:0:0:0,-30.103,-321.238	0/1:49:26,23:26:932:23:824:-59.7328,0,-69.4422	0/1:48:23,25:23:828:25:866:-63.8019,0,-60.3947	0/1:59:25,34:25:900:34:1220:-92.346,0,-63.5602	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/0:60:60,0:60:2136:0:0:0,-18.0618,-192.508	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:66:24,42:24:864:42:1481:-113.714,0,-58.2146	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	.:.:.:.:.:.:.:.	0/0:66:66,0:66:2333:0:0:0,-19.868,-210.229	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:51:14,37:14:500:37:1317:-103.477,0,-29.9836	0/0:141:141,0:141:5020:0:0:0,-42.4452,-451.95	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:130:51,79:51:1820:79:2801:-213.196,0,-124.947	0/0:66:65,1:65:2319:1:36:0,-16.2697,-205.372	0/1:31:16,15:16:572:15:536:-39.2383,0,-42.4815	0/0:41:41,0:41:1448:0:0:0,-12.3422,-130.616	0/1:76:28,48:28:1008:48:1727:-132.677,0,-68.1581	0/1:64:20,44:20:716:44:1557:-121.154,0,-45.4984	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.631	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.298	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.519	0/1:106:40,66:40:1440:66:2323:-177.417,0,-97.9885	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.77	0/0:114:114,0:114:4071:0:0:0,-34.3174,-366.35	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:124:73,51:73:2616:51:1774:-122.61,0,-198.343	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.345	0/0:100:100,0:100:3561:0:0:0,-30.103,-320.695	0/0:90:90,0:90:3199:0:0:0,-27.0927,-288.134	0/0:107:106,0:106:3788:0:0:0,-31.9092,-340.753	0/1:105:44,61:44:1566:61:2159:-162.928,0,-109.594	0/0:248:247,1:247:8803:1:23:0,-72.3557,-789.96	0/1:33:18,15:18:636:15:536:-38.6375,0,-47.634	0/1:123:50,73:50:1796:73:2548:-192.542,0,-124.896	0/0:110:110,0:110:3931:0:0:0,-33.1133,-353.982	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.818	0/1:110:54,56:54:1936:56:1996:-146.801,0,-141.398	0/1:135:47,88:47:1680:88:3118:-240.115,0,-110.838	0/0:117:117,0:117:4180:0:0:0,-35.2205,-376.381	0/0:210:210,0:210:7463:0:0:0,-63.2163,-671.718
chr04	7973133	.	AGCT	AGCC	131524	PASS	AB=0.443042;ABP=83.4035;AC=144;AF=0.774194;AN=186;AO=4873;CIGAR=3M1X;DP=6496;DPB=6496;DPRA=0;EPP=30.1967;EPPR=18.6956;GTI=0;LEN=1;MEANALT=1.37634;MQM=59.975;MQMR=59.8492;NS=93;NUMALT=1;ODDS=1.36935;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171402;QR=55624;RO=1585;RPL=4820;RPP=10129.3;RPPR=3281.74;RPR=53;RUN=1;SAF=2260;SAP=58.5377;SAR=2613;SRF=720;SRP=31.8148;SRR=865;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:5,21:5:157:21:743:-59.3666,0,-6.61223	1/1:50:0,49:0:0:49:1738:-156.451,-14.7505,0	1/1:64:0,64:0:0:64:2239:-201.772,-19.2659,0	1/1:68:0,68:0:0:68:2384:-214.814,-20.47,0	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	1/1:30:0,30:0:0:30:1055:-95.26,-9.0309,0	0/1:59:28,30:28:991:30:1053:-77.2595,0,-71.6836	1/1:75:1,74:1:36:74:2565:-227.501,-18.979,0	0/1:85:44,41:44:1540:41:1407:-101.332,0,-113.295	1/1:81:0,81:0:0:81:2832:-255.118,-24.3834,0	1/1:78:0,78:0:0:78:2737:-246.574,-23.4803,0	1/1:180:0,179:0:0:179:6271:-564.218,-53.8844,0	1/1:145:1,144:1:36:144:5062:-452.133,-40.0511,0	1/1:75:0,74:0:0:74:2641:-237.575,-22.2762,0	0/1:147:79,68:79:2801:68:2400:-172.004,0,-208.079	0/1:90:47,42:47:1654:42:1486:-106.901,0,-122.008	1/1:57:0,57:0:0:57:1998:-180.093,-17.1587,0	0/1:58:30,28:30:1031:28:983:-71.3222,0,-75.6302	0/1:61:33,28:33:1164:28:972:-69.4264,0,-86.7027	0/1:54:26,28:26:928:28:954:-69.9095,0,-67.5779	0/1:86:50,36:50:1717:36:1258:-87.6297,0,-128.903	0/1:20:16,4:16:571:4:144:-7.29302,0,-45.7025	0/1:49:19,30:19:672:30:1058:-80.7791,0,-46.0556	1/1:32:0,32:0:0:32:1115:-100.643,-9.63296,0	1/1:29:0,29:0:0:29:1024:-92.4726,-8.72987,0	0/1:129:75,53:75:2620:53:1851:-127.973,0,-197.154	0/1:108:59,49:59:2061:49:1743:-124.642,0,-153.244	1/1:75:0,75:0:0:75:2640:-237.844,-22.5773,0	0/1:105:51,54:51:1804:54:1923:-141.738,0,-131.031	0/1:47:27,20:27:955:20:716:-50.6193,0,-72.1162	1/1:41:0,39:0:0:39:1348:-121.312,-11.7402,0	0/1:7:3,3:3:104:3:108:-7.90916,0,-7.54029	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:12:0,11:0:0:11:392:-35.3063,-3.31133,0	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:322:0,320:0:0:320:11255:-1012.63,-96.3296,0	1/1:16:0,16:0:0:16:546:-49.4618,-4.81648,0	0/1:71:30,41:30:1058:41:1436:-108.159,0,-74.1557	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:78:50,28:50:1738:28:996:-66.4745,0,-133.213	1/1:34:1,33:1:36:33:1180:-102.91,-6.63675,0	0/1:53:30,22:30:1053:22:763:-52.9948,0,-79.0849	0/1:114:60,54:60:2130:54:1930:-139.659,0,-157.648	1/1:99:0,99:0:0:99:3507:-315.839,-29.802,0	0/1:51:24,27:24:842:27:950:-70.4547,0,-60.7455	0/1:49:25,24:25:847:24:856:-62.6106,0,-61.7886	0/1:59:35,24:35:1191:24:824:-56.7118,0,-89.7265	1/1:48:0,47:0:0:47:1653:-148.695,-14.1484,0	1/1:64:0,60:0:0:60:2106:-189.456,-18.0618,0	1/1:36:0,35:0:0:35:1235:-111.093,-10.5361,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:68:44,24:44:1549:24:847:-56.0787,0,-119.23	0/1:12:7,5:7:251:5:176:-12.5727,0,-19.3255	.:.:.:.:.:.:.:.	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:4,1:4:137:1:32:-1.69416,0,-11.1625	0/1:53:40,13:40:1417:13:464:-26.1429,0,-111.872	1/1:141:0,140:0:0:140:4915:-442.144,-42.1442,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:133:82,51:82:2898:51:1808:-122.962,0,-221.02	1/1:70:1,69:1:36:69:2433:-215.627,-17.4738,0	0/1:33:15,18:15:507:18:644:-48.3566,0,-36.0138	1/1:40:0,40:0:0:40:1393:-125.665,-12.0412,0	0/1:79:52,27:52:1810:27:956:-62.5744,0,-139.166	0/1:66:45,20:45:1598:20:720:-45.2876,0,-124.271	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:57:0,57:0:0:57:2018:-181.891,-17.1587,0	1/1:64:0,63:0:0:63:2202:-198.084,-18.9649,0	0/1:11:4,7:4:142:7:252:-19.7176,0,-9.81788	1/1:50:0,49:0:0:49:1740:-156.524,-14.7505,0	0/1:111:71,40:71:2494:40:1423:-94.9524,0,-191.296	1/1:80:0,80:0:0:80:2801:-252.322,-24.0824,0	1/1:113:0,113:0:0:113:3985:-358.843,-34.0164,0	0/1:22:8,14:8:288:14:492:-37.9897,0,-19.6447	0/1:127:52,74:52:1805:74:2604:-196.304,0,-124.437	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	1/1:65:0,64:0:0:64:2246:-202.151,-19.2659,0	1/1:55:0,54:0:0:54:1893:-170.283,-16.2556,0	1/1:97:0,97:0:0:97:3403:-306.484,-29.1999,0	1/1:87:0,86:0:0:86:3010:-270.772,-25.8886,0	1/1:109:0,108:0:0:108:3825:-344.089,-32.5112,0	0/1:106:64,42:64:2266:42:1479:-101.495,0,-172.267	1/1:246:0,245:0:0:245:8621:-775.607,-73.7524,0	0/1:32:17,14:17:608:14:500:-35.6446,0,-45.3572	0/1:128:76,52:76:2632:52:1838:-127.167,0,-198.595	1/1:108:0,107:0:0:107:3755:-337.793,-32.2102,0	1/1:36:0,34:0:0:34:1179:-106.052,-10.235,0	0/1:111:57,54:57:2022:54:1862:-134.437,0,-148.839	0/1:141:94,47:94:3319:47:1636:-105.076,0,-256.463	1/1:121:0,118:0:0:118:4146:-373.027,-35.5215,0	1/1:212:0,210:0:0:210:7360:-662.155,-63.2163,0
chr04	8090278	.	G	T	47362	PASS	AB=0.594474;ABP=350.941;AC=43;AF=0.231183;AN=186;AO=2691;CIGAR=1X;DP=9113;DPB=9113;DPRA=1.22817;EPP=5837.76;EPPR=13630.6;GTI=5;LEN=1;MEANALT=1.15385;MQM=59.948;MQMR=59.9916;NS=93;NUMALT=1;ODDS=0.0678442;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96119;QR=227830;RO=6411;RPL=1;RPP=5837.76;RPPR=13630.6;RPR=2690;RUN=1;SAF=2691;SAP=5846.44;SAR=0;SRF=6409;SRP=13907;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/0:108:107,1:107:3832:1:36:0,-28.913,-341.478	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.082	0/0:171:171,0:171:6076:0:0:0,-51.4761,-546.945	0/0:73:71,2:71:2534:2:72:0,-15.1385,-221.473	0/0:87:87,0:87:3075:0:0:0,-26.1896,-276.978	0/1:104:44,60:44:1539:60:2139:-161.47,0,-107.494	0/0:97:96,1:96:3427:1:36:0,-25.6016,-305.046	0/1:66:30,36:30:1064:36:1280:-95.6353,0,-76.2037	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/0:110:110,0:110:3907:0:0:0,-33.1133,-351.826	0/0:85:85,0:85:2992:0:0:0,-25.5875,-269.513	0/0:73:73,0:73:2595:0:0:0,-21.9752,-233.799	0/0:90:90,0:90:3199:0:0:0,-27.0927,-287.865	0/1:76:34,42:34:1220:42:1494:-111.875,0,-87.2285	0/1:55:26,29:26:915:29:1040:-77.3577,0,-66.1089	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.395	0/1:86:50,36:50:1780:36:1296:-91.0554,0,-134.594	0/1:69:25,44:25:900:44:1580:-121.72,0,-60.5499	0/1:258:81,177:81:2866:177:6340:-493.024,0,-180.512	0/1:157:69,87:69:2464:87:3119:-233.616,0,-174.694	0/1:64:14,50:14:491:50:1783:-141.482,0,-25.2552	0/1:33:12,21:12:432:21:752:-58.0723,0,-29.2872	0/0:75:70,4:70:2487:4:144:0,-9.32243,-210.77	0/0:63:63,0:63:2220:0:0:0,-18.9649,-200.063	0/1:207:60,147:60:2127:147:5230:-408.527,0,-129.385	0/1:139:47,92:47:1676:92:3284:-253.937,0,-109.284	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:252:103,149:103:3663:149:5316:-402.716,0,-254.016	0/1:168:59,109:59:2100:109:3889:-299.63,0,-138.697	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	.:.:.:.:.:.:.:.	0/1:11:4,7:4:136:7:252:-19.7176,0,-9.26421	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:182:182,0:182:6502:0:0:0,-54.7875,-585.265	0/0:148:148,0:148:5277:0:0:0,-44.5524,-475.067	0/1:89:36,52:36:1265:52:1868:-141.549,0,-87.3001	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:224:91,132:91:3228:132:4709:-356.57,0,-223.344	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.55	0/1:173:58,115:58:2063:115:4107:-317.735,0,-133.862	0/1:82:39,43:39:1388:43:1526:-112.947,0,-100.534	0/0:74:74,0:74:2617:0:0:0,-22.2762,-235.777	0/1:46:15,31:15:536:31:1103:-85.7324,0,-34.7274	0/1:85:50,35:50:1772:35:1246:-86.8325,0,-134.176	0/1:198:89,109:89:3184:109:3893:-290.642,0,-227.18	0/0:62:62,0:62:2199:0:0:0,-18.6639,-198.175	0/0:132:132,0:132:4684:0:0:0,-39.736,-421.723	0/0:98:98,0:98:3477:0:0:0,-29.5009,-313.142	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/1:179:96,83:96:3411:83:2963:-213.019,0,-253.321	0/1:73:34,39:34:1211:39:1398:-104.144,0,-87.3203	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:204:204,0:204:7250:0:0:0,-61.4101,-652.51	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	0/1:101:39,61:39:1388:61:2169:-165.011,0,-94.7562	0/0:134:133,1:133:4712:1:36:0,-36.7397,-420.644	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:298:147,151:147:5241:151:5389:-395.434,0,-382.121	0/0:212:205,7:205:7253:7:243:0,-41.6109,-630.623	0/1:87:50,37:50:1754:37:1332:-93.9928,0,-131.953	0/0:104:104,0:104:3691:0:0:0,-31.3071,-332.395	0/1:154:62,91:62:2211:91:3253:-246.605,0,-152.877	0/1:132:21,111:21:747:111:3958:-316.589,0,-27.8183	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:50:49,0:49:1748:0:0:0,-14.7505,-157.244	0/0:92:91,1:91:3225:1:36:0,-24.0965,-286.874	0/1:21:5,16:5:180:16:558:-44.2248,0,-10.2304	0/0:78:78,0:78:2763:0:0:0,-23.4803,-248.91	0/1:67:26,41:26:906:41:1468:-112.247,0,-61.6845	0/0:97:96,1:96:3419:1:36:0,-25.6016,-304.327	0/0:193:193,0:193:6860:0:0:0,-58.0988,-617.473	0/1:104:20,83:20:712:83:2968:-236.02,0,-33.0789	0/1:132:51,81:51:1815:81:2908:-222.219,0,-123.895	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:105:103,2:103:3675:2:72:0,-24.7714,-324.117	0/0:114:112,0:112:3975:0:0:0,-33.7154,-357.584	0/0:297:297,0:297:10520:0:0:0,-89.4059,-946.73	0/0:116:116,0:116:4135:0:0:0,-34.9195,-372.335	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:130:62,68:62:2181:68:2415:-178.472,0,-157.421	0/0:133:133,0:133:4739:0:0:0,-40.037,-426.67	0/1:43:18,25:18:644:25:892:-67.6554,0,-45.3463	0/1:90:41,49:41:1464:49:1763:-131.861,0,-104.963	0/0:69:69,0:69:2451:0:0:0,-20.7711,-220.845	0/0:67:66,1:66:2351:1:36:0,-16.5707,-208.25	0/1:134:74,60:74:2614:60:2148:-153.249,0,-195.17	0/1:65:17,47:17:612:47:1684:-132.221,0,-35.7877	0/0:139:139,0:139:4951:0:0:0,-41.8432,-445.742	0/0:110:110,0:110:3892:0:0:0,-33.1133,-350.476
chr04	8090285	.	G	A	50774.2	PASS	AB=0.598375;ABP=385.815;AC=43;AF=0.231183;AN=186;AO=2749;CIGAR=1X;DP=9175;DPB=9175;DPRA=1.29712;EPP=5495.89;EPPR=12508.5;GTI=5;LEN=1;MEANALT=1.05882;MQM=59.9352;MQMR=59.9916;NS=93;NUMALT=1;ODDS=0.37793;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98229;QR=227655;RO=6421;RPL=56;RPP=5495.89;RPPR=12508.5;RPR=2693;RUN=1;SAF=2749;SAP=5972.39;SAR=0;SRF=6419;SRP=13928.7;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:110:109,0:109:3874:0:0:0,-32.8123,-348.496	0/0:77:77,0:77:2742:0:0:0,-23.1793,-247.022	0/0:173:173,0:173:6127:0:0:0,-52.0782,-551.535	0/0:74:72,2:72:2559:2:72:0,-15.4395,-223.724	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.613	0/1:106:45,61:45:1582:61:2188:-165.276,0,-110.76	0/0:98:97,1:97:3456:1:36:0,-25.9027,-307.656	0/1:66:31,35:31:1103:35:1233:-91.2148,0,-79.7118	0/0:60:60,0:60:2130:0:0:0,-18.0618,-191.967	0/0:109:108,0:108:3823:0:0:0,-32.5112,-343.905	0/0:88:88,0:88:3074:0:0:0,-26.4906,-276.888	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:90:90,0:90:3182:0:0:0,-27.0927,-286.336	0/1:77:35,42:35:1235:42:1500:-112.115,0,-88.2741	0/1:53:25,28:25:892:28:1004:-74.7213,0,-64.6451	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/1:83:47,36:47:1666:36:1292:-91.5983,0,-125.24	0/1:69:25,44:25:896:44:1584:-122.08,0,-60.1893	0/1:264:86,178:86:3007:178:6370:-493.917,0,-191.391	0/1:159:73,86:73:2615:86:3067:-228.395,0,-187.733	0/1:64:14,50:14:500:50:1779:-141.119,0,-26.0703	0/1:32:11,21:11:396:21:748:-58.0123,0,-26.3498	0/0:76:72,4:72:2558:4:144:0,-9.56466,-217.156	0/0:62:62,0:62:2197:0:0:0,-18.6639,-197.994	0/1:209:62,147:62:2192:147:5229:-407.835,0,-134.628	0/1:139:47,92:47:1657:92:3273:-252.947,0,-107.572	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.496	0/1:260:107,153:107:3795:153:5491:-416.047,0,-263.483	0/1:174:62,112:62:2216:112:3993:-307.181,0,-147.326	0/0:101:101,0:101:3596:0:0:0,-30.404,-323.848	.:.:.:.:.:.:.:.	0/1:12:4,8:4:140:8:288:-22.655,0,-9.33222	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:177:177,0:177:6270:0:0:0,-53.2823,-564.399	0/0:146:146,0:146:5205:0:0:0,-43.9504,-468.589	0/1:88:38,50:38:1327:50:1800:-135.792,0,-93.2355	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:230:93,137:93:3272:137:4913:-373.082,0,-225.465	0/0:58:58,0:58:2037:0:0:0,-17.4597,-183.601	0/1:177:59,118:59:2103:118:4218:-326.513,0,-136.257	0/1:84:39,45:39:1367:45:1620:-120.803,0,-98.0384	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.064	0/1:48:17,31:17:612:31:1116:-86.3023,0,-40.964	0/1:85:46,38:46:1627:38:1354:-96.4895,0,-121.072	0/1:204:94,110:94:3351:110:3936:-292.89,0,-240.397	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/0:134:134,0:134:4740:0:0:0,-40.338,-426.762	0/0:97:97,0:97:3425:0:0:0,-29.1999,-308.466	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:178:93,85:93:3283:85:3035:-219.797,0,-242.107	0/1:75:35,40:35:1247:40:1430:-106.42,0,-89.9568	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:208:208,0:208:7352:0:0:0,-62.6142,-661.113	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:12:3,9:3:104:9:320:-25.53,0,-6.09045	0/1:107:42,65:42:1492:65:2305:-175.498,0,-102.364	0/0:136:135,1:135:4815:1:36:0,-37.3418,-429.908	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:304:150,154:150:5329:154:5516:-405.052,0,-388.233	0/0:210:203,7:203:7228:7:248:0,-40.5521,-627.912	0/1:89:49,40:49:1712:40:1436:-102.746,0,-127.571	0/0:103:103,0:103:3649:0:0:0,-31.0061,-328.616	0/1:154:62,92:62:2199:92:3272:-248.332,0,-151.817	0/1:135:21,114:21:756:114:4065:-325.311,0,-27.7282	0/0:43:43,0:43:1521:0:0:0,-12.9443,-137.181	0/0:51:51,0:51:1797:0:0:0,-15.3525,-162.01	0/0:94:94,0:94:3344:0:0:0,-28.2968,-301.179	0/1:21:5,16:5:165:16:568:-45.1302,0,-8.85197	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.037	0/1:65:25,40:25:883:40:1410:-107.627,0,-60.2205	0/0:97:95,1:95:3356:1:36:0,-25.6604,-298.659	0/0:191:188,3:188:6714:3:108:0,-47.4216,-594.261	0/1:111:19,92:19:680:92:3276:-261.64,0,-28.1148	0/1:131:49,81:49:1736:81:2900:-221.782,0,-117.07	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:108:106,2:106:3755:2:72:0,-25.6745,-331.313	0/0:113:113,0:113:4023:0:0:0,-34.0164,-362.26	0/0:302:302,0:302:10716:0:0:0,-90.9111,-964.359	0/0:115:115,0:115:4038:0:0:0,-34.6184,-363.609	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:127:57,70:57:2021:70:2500:-187.018,0,-143.93	0/0:130:130,0:130:4595:0:0:0,-39.1339,-413.718	0/1:44:18,26:18:644:26:927:-70.502,0,-45.0453	0/1:93:43,50:43:1503:50:1795:-133.837,0,-107.567	0/0:69:69,0:69:2452:0:0:0,-20.7711,-220.933	0/0:66:65,1:65:2320:1:36:0,-16.2697,-205.462	0/1:132:69,63:69:2422:63:2254:-163.387,0,-178.498	0/1:68:17,51:17:608:51:1824:-143.971,0,-34.582	0/0:136:136,0:136:4821:0:0:0,-40.9401,-434.048	0/0:112:112,0:112:3933:0:0:0,-33.7154,-354.165
chr04	8090318	.	G	C	343408	PASS	AB=0.440005;ABP=280.764;AC=144;AF=0.765957;AN=188;AO=13106;CIGAR=1X;DP=18141;DPB=18141;DPRA=0;EPP=28462.3;EPPR=10882.1;GTI=3;LEN=1;MEANALT=1.21277;MQM=59.9584;MQMR=59.9844;NS=94;NUMALT=1;ODDS=1.11957;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=457950;QR=175566;RO=5014;RPL=6226;RPP=73.8766;RPPR=10.7867;RPR=6880;RUN=1;SAF=6226;SAP=73.8766;SAR=6880;SRF=2573;SRP=10.5563;SRR=2441;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:26,19:26:932:19:667:-46.8083,0,-70.6525	1/1:252:1,251:1:36:251:8815:-789.739,-72.2613,0	1/1:269:0,269:0:0:269:9526:-857.279,-80.9771,0	1/1:300:1,299:1:32:299:10417:-934.262,-87.1097,0	1/1:125:2,123:2:72:123:4368:-386.458,-30.792,0	1/1:188:0,188:0:0:188:6583:-592.55,-56.5936,0	0/1:317:136,181:136:4797:181:6394:-480.131,0,-336.46	1/1:273:7,265:7:248:265:9334:-817.37,-59.5751,0	0/1:133:82,51:82:2904:51:1785:-120.893,0,-221.561	1/1:136:0,135:0:0:135:4815:-433.147,-40.6391,0	1/1:179:0,179:0:0:179:6128:-551.613,-53.8844,0	1/1:164:0,164:0:0:164:5656:-509.167,-49.3689,0	1/1:129:0,129:0:0:129:4512:-406.254,-38.8329,0	1/1:132:0,132:0:0:132:4616:-415.612,-39.736,0	0/1:142:79,63:79:2758:63:2172:-152.997,0,-205.716	0/1:109:60,49:60:2106:49:1724:-122.63,0,-156.997	1/1:146:0,145:0:0:145:5109:-459.601,-43.6494,0	0/1:133:58,75:58:2051:75:2622:-196.189,0,-144.824	0/1:102:58,44:58:2040:44:1494:-104.04,0,-153.165	0/1:451:277,174:277:9738:174:6097:-413.07,0,-740.624	0/1:303:171,132:171:6012:132:4618:-324.577,0,-449.909	0/1:177:119,57:119:4182:57:2011:-127.958,0,-323.265	0/1:135:70,65:70:2432:65:2286:-165.357,0,-178.49	1/1:235:18,216:18:644:216:7653:-630.525,-12.5101,0	1/1:130:0,130:0:0:130:4543:-409.034,-39.1339,0	0/1:509:320,189:320:11209:189:6673:-447.427,0,-855.49	0/1:371:215,155:215:7562:155:5448:-378.794,0,-569.03	1/1:71:0,71:0:0:71:2455:-221.205,-21.3731,0	0/1:522:260,261:260:9122:261:9157:-666.916,0,-663.773	0/1:266:153,112:153:5367:112:3903:-271.193,0,-403.037	1/1:206:0,206:0:0:206:7184:-646.624,-62.0122,0	0/1:32:23,9:23:813:9:324:-19.8729,0,-63.8561	0/1:43:24,19:24:846:19:666:-47.3193,0,-63.5135	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:21:0,21:0:0:21:729:-65.9301,-6.32163,0	0/1:25:11,14:11:388:14:495:-37.3573,0,-27.7316	1/1:387:0,387:0:0:387:13442:-1209.61,-116.499,0	1/1:311:0,311:0:0:311:10925:-983.156,-93.6203,0	0/1:166:92,74:92:3165:74:2581:-182.559,0,-234.914	0/1:5:3,2:3:108:2:63:-4.478,0,-8.57002	0/1:367:232,135:232:8144:135:4709:-313.497,0,-622.513	1/1:89:0,89:0:0:89:3057:-275.36,-26.7917,0	0/1:305:175,129:175:6100:129:4516:-314.739,0,-457.242	0/1:156:77,79:77:2675:79:2756:-201.323,0,-194.034	1/1:162:0,161:0:0:161:5563:-500.45,-48.4658,0	0/1:212:96,116:96:3389:116:4091:-303.991,0,-241.409	0/1:164:67,97:67:2355:97:3419:-258.556,0,-162.751	0/1:361:190,169:190:6662:169:5885:-421.334,0,-491.238	1/1:169:1,168:1:36:168:5872:-524.994,-47.2758,0	1/1:252:0,252:0:0:252:8857:-797.124,-75.8596,0	1/1:266:0,266:0:0:266:9354:-841.839,-80.074,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:318:174,144:174:6122:144:4971:-351.821,0,-455.36	0/1:108:57,51:57:1985:51:1782:-128.148,0,-146.412	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:332:1,331:1:36:331:11470:-1028.22,-96.3437,0	1/1:88:0,88:0:0:88:3133:-282.194,-26.4906,0	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	0/1:30:15,15:15:517:15:528:-38.8205,0,-37.8237	0/1:158:86,72:86:2968:72:2539:-181.197,0,-219.79	1/1:234:1,233:1:36:233:8089:-724.445,-66.8427,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	0/1:481:251,229:251:8827:229:8005:-575.633,0,-649.577	1/1:445:11,434:11:387:434:15229:-1335.19,-98.7924,0	0/1:155:62,93:62:2170:93:3247:-245.79,0,-148.904	1/1:176:0,176:0:0:176:6102:-549.294,-52.9813,0	0/1:386:226,160:226:7931:160:5634:-390.99,0,-597.628	0/1:272:206,66:206:7113:66:2307:-126.009,0,-558.367	1/1:64:0,64:0:0:64:2204:-198.624,-19.2659,0	1/1:120:1,119:1:36:119:4167:-371.618,-32.5253,0	1/1:154:0,154:0:0:154:5347:-481.375,-46.3586,0	0/1:46:28,18:28:991:18:630:-43.1772,0,-75.6561	1/1:198:0,198:0:0:198:7002:-630.251,-59.6039,0	0/1:128:65,63:65:2299:63:2225:-161.976,0,-168.64	1/1:239:1,238:1:36:238:8381:-750.216,-68.3479,0	1/1:334:2,332:2:68:332:11555:-1033.4,-94.0863,0	0/1:215:138,77:138:4790:77:2681:-176.807,0,-366.546	0/1:225:137,88:137:4842:88:3098:-211.316,0,-368.206	0/1:19:10,9:10:347:9:324:-23.7863,0,-25.844	1/1:213:2,211:2:72:211:7424:-661.378,-57.2827,0	1/1:209:0,207:0:0:207:7225:-649.939,-62.3132,0	1/1:531:0,530:0:0:530:18528:-1666.92,-159.546,0	1/1:198:0,198:0:0:198:6846:-616.225,-59.6039,0	1/1:115:0,115:0:0:115:3962:-356.778,-34.6185,0	0/1:207:113,93:113:3865:93:3210:-226.793,0,-285.716	1/1:274:0,274:0:0:274:9516:-856.42,-82.4822,0	0/1:83:45,38:45:1560:38:1347:-96.5358,0,-115.702	0/1:170:91,77:91:3139:77:2649:-187.762,0,-231.846	1/1:146:0,145:0:0:145:5016:-451.24,-43.6494,0	1/1:102:1,101:1:36:101:3476:-309.457,-27.1068,0	0/1:204:99,105:99:3434:105:3681:-270.086,0,-247.866	0/1:128:86,41:86:2998:41:1437:-91.0331,0,-231.46	1/1:201:0,201:0:0:201:6826:-614.43,-60.507,0	1/1:209:1,208:1:36:208:7137:-638.807,-59.317,0
chr04	8275750	.	ATTA	ATTG	184895	PASS	AB=0.476354;ABP=31.2506;AC=142;AF=0.755319;AN=188;AO=8862;CIGAR=3M1X;DP=11968;DPB=11969.5;DPRA=25.7269;EPP=19246.6;EPPR=6678.12;GTI=1;LEN=1;MEANALT=1.29032;MQM=59.9738;MQMR=59.9821;NS=94;NUMALT=1;ODDS=0.612634;PAIRED=0;PAIREDR=0;PAO=3.5;PQA=122;PQR=0;PRO=0;QA=315197;QR=108017;RO=3074;RPL=0;RPP=19246.6;RPPR=6678.12;RPR=8862;RUN=1;SAF=8862;SAP=19246.6;SAR=0;SRF=3074;SRP=6678.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:40,19:40:1390:19:684:-44.1296,0,-107.635	1/1:241:0,240:0:0:240:8486:-763.464,-72.2472,0	1/1:182:0,182:0:0:182:6471:-582.475,-54.7875,0	1/1:346:0,344:0:0:344:12246:-1101.73,-103.554,0	1/1:136:0,136:0:0:136:4839:-435.661,-40.9401,0	1/1:72:0,68:0:0:68:2423:-217.969,-20.47,0	0/1:191:110,80:110:3826:80:2849:-199.23,0,-287.129	1/1:175:2,171:2:66:171:6109:-543.671,-46.1027,0	0/1:188:89,99:89:3155:99:3522:-260.594,0,-227.584	1/1:138:0,137:0:0:137:4851:-436.434,-41.2411,0	1/1:40:0,40:0:0:40:1402:-126.473,-12.0412,0	1/1:76:0,76:0:0:76:2698:-243.062,-22.8783,0	1/1:60:0,59:0:0:59:2120:-190.817,-17.7608,0	1/1:37:0,37:0:0:37:1302:-117.477,-11.1381,0	0/1:62:41,21:41:1447:21:756:-49.7034,0,-111.861	0/1:48:25,23:25:883:23:828:-60.3947,0,-65.3377	1/1:57:0,57:0:0:57:2029:-182.881,-17.1587,0	0/1:62:31,31:31:1110:31:1112:-81.7275,0,-81.5478	0/1:43:18,25:18:633:25:892:-67.6554,0,-44.3525	0/1:400:210,189:210:7342:189:6764:-488.451,0,-540.468	0/1:218:116,102:116:4034:102:3607:-259.21,0,-297.63	0/1:126:74,52:74:2591:52:1856:-129.39,0,-195.511	0/1:126:67,59:67:2335:59:2086:-150.077,0,-172.468	1/1:231:14,217:14:497:217:7734:-651.029,-24.4733,0	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	0/1:459:245,214:245:8635:214:7649:-550.187,0,-638.992	0/1:246:111,135:111:3917:135:4827:-360.213,0,-278.674	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:358:182,176:182:6410:176:6269:-456.523,0,-469.21	0/1:138:80,58:80:2815:58:2066:-144.667,0,-212.049	1/1:179:0,179:0:0:179:6317:-568.622,-53.8844,0	0/1:18:6,12:6:209:12:432:-33.8027,0,-13.7318	0/1:12:4,8:4:142:8:288:-22.655,0,-9.51691	1/1:8:0,6:0:0:6:216:-19.4307,-1.80618,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:12:3,9:3:107:9:324:-25.8935,0,-6.36981	1/1:233:0,233:0:0:233:8338:-750.427,-70.14,0	1/1:167:0,167:0:0:167:5980:-538.242,-50.272,0	0/1:63:37,26:37:1319:26:932:-65.234,0,-100.047	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:236:121,115:121:4240:115:4078:-296.16,0,-310.743	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:204:113,91:113:3950:91:3245:-230.731,0,-294.287	0/1:113:58,55:58:2050:55:1938:-140.676,0,-150.755	1/1:81:0,80:0:0:80:2800:-252.03,-24.0824,0	0/1:112:61,51:61:2155:51:1821:-130.451,0,-160.503	0/1:179:91,88:91:3189:88:3111:-226.322,0,-233.344	0/1:261:138,123:138:4848:123:4346:-312.732,0,-357.914	1/1:158:0,158:0:0:158:5623:-506.19,-47.5627,0	1/1:173:0,173:0:0:173:6154:-553.9,-52.0782,0	1/1:221:0,220:0:0:220:7857:-706.928,-66.2266,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:205:86,118:86:3014:118:4172:-313.89,0,-209.725	0/1:38:16,22:16:562:22:784:-59.4448,0,-39.4703	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:179:0,179:0:0:179:6295:-566.644,-53.8844,0	1/1:62:2,60:2:72:60:2144:-186.391,-11.8271,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:25:13,12:13:463:12:417:-30.3345,0,-34.4813	0/1:70:42,28:42:1466:28:1008:-69.9643,0,-111.162	1/1:104:0,103:0:0:103:3643:-327.712,-31.0061,0	0/1:15:2,13:2:66:13:460:-37.2199,0,-1.7525	0/1:219:118,101:118:4110:101:3589:-257.292,0,-304.169	1/1:276:5,270:5:175:270:9605:-848.311,-67.0506,0	0/1:87:55,32:55:1951:32:1144:-77.0799,0,-149.676	1/1:124:0,123:0:0:123:4378:-393.906,-37.0267,0	0/1:325:157,168:157:5523:168:5951:-437.863,0,-399.371	0/1:149:98,50:98:3458:50:1800:-117.37,0,-266.524	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	1/1:69:0,66:0:0:66:2368:-213.053,-19.868,0	1/1:96:0,96:0:0:96:3432:-309.094,-28.8989,0	0/1:30:16,14:16:557:14:496:-35.9434,0,-41.4255	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	0/1:58:26,32:26:909:32:1147:-86.0799,0,-64.6662	1/1:183:0,182:0:0:182:6449:-580.138,-54.7875,0	1/1:251:2,249:2:68:249:8868:-791.586,-69.161,0	0/1:154:69,85:69:2469:85:3033:-226.84,0,-176.106	0/1:137:67,70:67:2367:70:2512:-185.091,0,-172.049	0/1:8:3,5:3:107:5:180:-14.1438,0,-7.57393	1/1:188:2,185:2:70:185:6599:-587.339,-50.0018,0	1/1:176:0,176:0:0:176:6228:-560.558,-52.9813,0	1/1:414:0,413:0:0:413:14664:-1319.16,-124.325,0	1/1:113:0,113:0:0:113:3978:-358.211,-34.0164,0	1/1:55:0,55:0:0:55:1945:-175.322,-16.5567,0	0/1:75:50,25:50:1773:25:869:-55.9466,0,-137.276	1/1:162:1,158:1:36:158:5594:-499.986,-44.6253,0	0/1:54:29,25:29:1041:25:885:-63.7109,0,-77.7489	0/1:79:36,43:36:1266:43:1531:-114.301,0,-90.461	1/1:76:0,76:0:0:76:2713:-244.412,-22.8783,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:71:37,34:37:1305:34:1210:-87.8321,0,-96.3776	0/1:82:50,32:50:1714:32:1125:-76.8716,0,-129.856	1/1:172:0,172:0:0:172:6119:-550.781,-51.7772,0	1/1:108:0,107:0:0:107:3813:-343.007,-32.2102,0
chr04	8369068	.	A	G	39014.5	PASS	AB=0.519687;ABP=18.0581;AC=44;AF=0.234043;AN=188;AO=2349;CIGAR=1X;DP=9169;DPB=9169;DPRA=1.44609;EPP=5103.8;EPPR=14769;GTI=2;LEN=1;MEANALT=1.07843;MQM=59.5534;MQMR=59.9802;NS=94;NUMALT=1;ODDS=0.549117;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83146;QR=244381;RO=6816;RPL=2349;RPP=5103.8;RPPR=14760.4;RPR=0;RUN=1;SAF=0;SAP=5103.8;SAR=2349;SRF=1;SRP=14795.1;SRR=6815;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:43,1:43:1548:1:36:0,-9.64704,-136.015	0/0:158:157,1:157:5644:1:36:0,-43.9645,-504.478	0/0:141:141,0:141:5047:0:0:0,-42.4452,-454.375	0/1:246:111,135:111:3979:135:4789:-357.091,0,-284.246	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.918	0/1:152:72,80:72:2588:80:2818:-208.091,0,-187.412	0/0:162:159,3:159:5699:3:108:0,-38.6917,-502.951	0/1:119:67,52:67:2395:52:1817:-127.178,0,-179.984	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:21:8,13:8:288:13:468:-36.1357,0,-19.9458	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:46:25,21:25:892:21:740:-53.0622,0,-66.7523	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:40:17,23:17:608:23:815:-61.6269,0,-43.0108	0/1:46:22,24:22:792:24:840:-62.058,0,-57.7583	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:36:19,17:19:684:17:604:-43.8453,0,-51.0532	0/1:244:110,134:110:3939:134:4742:-352.874,0,-281.25	0/1:136:73,63:73:2600:63:2226:-159.631,0,-193.306	0/0:148:148,0:148:5320:0:0:0,-44.5524,-478.931	0/0:99:99,0:99:3532:0:0:0,-29.802,-318.088	0/1:105:92,13:92:3292:13:464:-10.4608,0,-264.891	0/1:100:52,48:52:1868:48:1694:-122.623,0,-138.296	0/1:307:134,172:134:4812:172:6118:-457.247,0,-340.907	0/1:176:90,86:90:3209:86:3026:-219.581,0,-236.046	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:260:126,134:126:4511:134:4750:-349.389,0,-327.876	0/0:202:198,4:198:7097:4:144:0,-47.4944,-625.468	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:19:4,15:4:144:15:540:-43.2123,0,-7.59405	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:169:169,0:169:6055:0:0:0,-50.8741,-545.052	0/0:183:183,0:183:6543:0:0:0,-55.0885,-588.95	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:301:121,179:121:4336:179:6324:-478.335,0,-299.746	0/1:38:20,18:20:716:18:635:-46.0378,0,-53.3286	0/0:107:107,0:107:3832:0:0:0,-32.2102,-345.077	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:159:69,90:69:2484:90:3170:-237.655,0,-175.949	0/0:141:138,3:138:4948:3:104:0,-32.7424,-435.766	0/1:209:112,97:112:4016:97:3440:-246.638,0,-298.713	0/1:135:70,64:70:2512:64:2274:-164.215,0,-185.636	0/1:108:38,70:38:1364:70:2498:-192.551,0,-90.5495	0/0:214:213,1:213:7656:1:36:0,-60.8221,-685.472	0/1:8:2,6:2:68:6:212:-17.0166,0,-4.04947	0/1:239:118,121:118:4248:121:4289:-314.114,0,-310.544	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.825	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/1:86:41,45:41:1464:45:1584:-116.93,0,-106.167	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/1:101:52,49:52:1868:49:1747:-126.716,0,-137.995	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:193:193,0:193:6913:0:0:0,-58.0988,-622.226	0/1:127:58,69:58:2058:69:2447:-182.118,0,-147.259	0/1:76:47,29:47:1683:29:1014:-68.6802,0,-128.85	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:174:172,2:172:6167:2:65:0,-46.2072,-548.954	0/1:164:48,116:48:1710:116:4054:-315.666,0,-104.815	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:84:36,48:36:1292:48:1724:-130.121,0,-90.3587	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:101:101,0:101:3607:0:0:0,-30.404,-324.836	0/1:66:37,29:37:1332:29:1036:-73.6696,0,-100.314	0/1:156:76,80:76:2719:80:2842:-209.049,0,-197.992	0/0:205:205,0:205:7376:0:0:0,-61.7111,-663.882	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:89:50,39:50:1796:39:1368:-96.6241,0,-135.131	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:102:101,1:101:3610:1:36:0,-27.1068,-321.506	0/0:106:106,0:106:3795:0:0:0,-31.9092,-341.747	0/0:190:190,0:190:6796:0:0:0,-57.1957,-611.713	0/1:88:38,49:38:1364:49:1748:-131.053,0,-96.5113	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.802	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:118:115,3:115:4136:3:104:0,-25.8187,-362.719	0/1:39:22,17:22:792:17:599:-42.3832,0,-59.8655	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.672	0/1:14:8,6:8:288:6:206:-14.6589,0,-22.053	0/1:61:34,27:34:1216:27:960:-68.3534,0,-91.3837	0/1:54:17,37:17:612:37:1315:-102.394,0,-39.1578	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/0:88:88,0:88:3159:0:0:0,-26.4906,-284.534
chr04	8369076	.	A	G	40660.3	PASS	AB=0.524358;ABP=26.2829;AC=44;AF=0.234043;AN=188;AO=2386;CIGAR=1X;DP=9234;DPB=9234;DPRA=1.43659;EPP=5184.14;EPPR=14860.2;GTI=3;LEN=1;MEANALT=1.04082;MQM=59.5298;MQMR=59.9775;NS=94;NUMALT=1;ODDS=0.298048;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85279;QR=244955;RO=6846;RPL=2386;RPP=5184.14;RPPR=14868.9;RPR=0;RUN=1;SAF=0;SAP=5184.14;SAR=2386;SRF=1;SRP=14860.2;SRR=6845;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:163:162,1:162:5809:1:36:0,-45.4696,-519.321	0/0:143:143,0:143:5136:0:0:0,-43.0473,-462.38	0/1:247:111,136:111:3962:136:4861:-363.259,0,-282.414	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.16	0/1:159:72,87:72:2584:87:3108:-232.069,0,-184.945	0/0:164:163,1:163:5807:1:36:0,-45.7706,-519.143	0/1:122:69,53:69:2480:53:1881:-132.317,0,-186.727	0/0:57:57,0:57:2037:0:0:0,-17.1587,-183.6	0/1:21:8,13:8:288:13:468:-36.1357,0,-19.9458	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/1:47:26,21:26:936:21:756:-54.2106,0,-70.4111	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/1:41:17,24:17:612:24:850:-64.4746,0,-43.0712	0/1:46:21,25:21:756:25:895:-67.0118,0,-54.5198	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:36:19,17:19:684:17:604:-43.8453,0,-51.0532	0/1:246:111,135:111:3969:135:4835:-360.611,0,-283.346	0/1:138:74,64:74:2641:64:2275:-163.446,0,-196.393	0/0:151:151,0:151:5358:0:0:0,-45.4555,-482.352	0/0:98:98,0:98:3505:0:0:0,-29.5009,-315.659	0/1:101:90,11:90:3228:11:388:-4.84808,0,-260.338	0/1:98:50,48:50:1773:48:1712:-124.865,0,-130.35	0/1:310:135,174:135:4837:174:6229:-467.064,0,-342.252	0/1:176:91,85:91:3227:85:3043:-221.101,0,-237.663	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:270:127,143:127:4560:143:5124:-380.009,0,-329.273	0/0:202:198,4:198:7081:4:144:0,-47.4944,-624.031	0/0:114:114,0:114:4062:0:0:0,-34.3174,-365.765	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:20:4,16:4:144:16:568:-45.4294,0,-7.29302	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:168:168,0:168:6036:0:0:0,-50.573,-543.341	0/0:187:186,1:186:6684:1:36:0,-52.7258,-598.066	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:302:120,182:120:4289:182:6527:-496.343,0,-295.275	0/1:38:19,19:19:684:19:672:-49.3677,0,-50.4512	0/0:109:109,0:109:3855:0:0:0,-32.8123,-347.144	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:164:70,94:70:2516:94:3343:-251.691,0,-177.323	0/0:139:139,0:139:4962:0:0:0,-41.8432,-446.727	0/1:210:113,97:113:4022:97:3441:-246.347,0,-298.951	0/1:135:69,66:69:2484:66:2356:-171.607,0,-183.174	0/1:110:38,72:38:1345:72:2592:-200.403,0,-88.2349	0/0:216:216,0:216:7760:0:0:0,-65.0225,-698.427	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:244:119,125:119:4268:125:4464:-328.343,0,-310.84	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.253	0/1:89:41,48:41:1419:48:1704:-126.844,0,-101.208	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:101:52,49:52:1853:49:1764:-128.245,0,-136.644	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:197:197,0:197:7057:0:0:0,-59.3029,-635.188	0/1:126:57,69:57:2048:69:2475:-185.021,0,-146.662	0/1:78:46,32:46:1626:32:1140:-79.4041,0,-123.116	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/0:175:173,2:173:6200:2:72:0,-45.8484,-551.264	0/1:160:49,111:49:1760:111:3965:-308.846,0,-110.519	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:87:36,51:36:1296:51:1824:-138.21,0,-89.8158	0/0:56:56,0:56:2001:0:0:0,-16.8577,-180.362	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/1:65:36,29:36:1296:29:1032:-73.6102,0,-97.377	0/1:157:76,81:76:2694:81:2904:-214.326,0,-195.44	0/0:206:206,0:206:7408:0:0:0,-62.0122,-666.761	0/0:94:94,0:94:3365:0:0:0,-28.2968,-303.064	0/1:89:50,39:50:1785:39:1404:-99.8676,0,-134.139	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:101:100,1:100:3547:1:36:0,-26.8058,-315.837	0/0:107:107,0:107:3821:0:0:0,-32.2102,-344.086	0/0:193:193,0:193:6867:0:0:0,-58.0988,-618.013	0/1:88:39,49:39:1404:49:1752:-131.471,0,-100.169	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:118:117,1:117:4192:1:36:0,-31.9233,-373.863	0/1:41:23,18:23:828:18:644:-45.886,0,-62.5019	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.762	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:63:34,28:34:1209:28:995:-70.9852,0,-90.2361	0/1:55:17,38:17:612:38:1356:-105.006,0,-38.8568	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.034	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222
chr04	8452459	.	T	A	10007.9	PASS	AB=0.288835;ABP=1120.01;AC=42;AF=0.225806;AN=186;AO=865;CIGAR=1X;DP=6740;DPB=6740;DPRA=0.973633;EPP=1881.33;EPPR=12760.4;GTI=6;LEN=1;MEANALT=1;MQM=59.8902;MQMR=59.8866;NS=93;NUMALT=1;ODDS=0.726236;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30921;QR=209385;RO=5875;RPL=34;RPP=1597.62;RPPR=3247.97;RPR=831;RUN=1;SAF=831;SAP=1597.62;SAR=34;SRF=1456;SRP=3247.97;SRR=4419;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:30,8:30:1061:8:288:-14.8283,0,-84.354	0/0:124:124,0:124:4441:0:0:0,-37.3277,-399.859	0/0:171:171,0:171:6113:0:0:0,-51.4761,-550.194	0/0:117:116,1:116:4152:1:36:0,-31.6222,-370.265	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/0:67:67,0:67:2380:0:0:0,-20.169,-214.457	0/1:77:40,37:40:1432:37:1313:-95.2904,0,-105.998	0/0:164:163,1:163:5779:1:36:0,-45.7706,-516.614	0/1:86:67,19:67:2354:19:680:-35.6406,0,-186.214	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:114:113,1:113:3980:1:36:0,-30.7191,-354.791	0/0:78:76,2:76:2721:2:72:0,-16.6436,-238.277	0/0:53:52,1:52:1841:1:36:0,-12.3568,-162.371	0/1:52:35,17:35:1260:17:612:-39.7595,0,-98.0519	0/1:78:61,17:61:2173:17:612:-31.9327,0,-172.354	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.645	0/1:50:37,13:37:1317:13:464:-27.046,0,-103.765	0/1:55:38,17:38:1368:17:608:-38.4954,0,-106.864	0/1:93:63,30:63:2196:30:1072:-68.7943,0,-169.904	0/1:121:78,43:78:2769:43:1544:-102.828,0,-212.995	0/1:32:21,11:21:740:11:396:-26.3498,0,-57.2904	0/1:68:50,18:50:1769:18:640:-36.9665,0,-139.021	0/0:64:63,1:63:2252:1:36:0,-15.6676,-199.325	0/0:108:108,0:108:3827:0:0:0,-32.5112,-344.624	0/1:139:106,33:106:3777:33:1169:-63.6717,0,-298.11	0/1:118:91,27:91:3241:27:972:-52.2764,0,-256.376	0/0:27:26,1:26:932:1:36:0,-4.52953,-80.6006	0/1:95:62,33:62:2200:33:1180:-77.9098,0,-169.668	0/1:102:84,18:84:2982:18:640:-27.2243,0,-237.905	0/0:92:92,0:92:3262:0:0:0,-27.6948,-293.799	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:9:8,1:8:288:1:32:-0.490043,0,-23.5581	0/0:186:186,0:186:6630:0:0:0,-55.9916,-596.774	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.817	0/1:59:38,21:38:1349:21:748:-49.8845,0,-103.948	0/1:6:3,3:3:108:3:108:-8.26857,0,-8.26899	0/1:111:81,30:81:2889:30:1076:-63.7381,0,-226.831	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:114:100,14:100:3585:14:504:-11.3803,0,-288.167	0/1:49:28,21:28:1004:21:748:-52.8948,0,-75.8901	0/0:54:54,0:54:1891:0:0:0,-16.2556,-170.459	0/1:69:55,14:55:1965:14:496:-24.1464,0,-156.352	0/1:103:77,26:77:2741:26:936:-53.5249,0,-215.912	0/1:62:46,16:46:1629:16:561:-32.1529,0,-128.163	0/0:66:64,2:64:2304:2:72:0,-13.0313,-200.784	0/0:97:97,0:97:3477:0:0:0,-29.1999,-313.139	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.664	.:.:.:.:.:.:.:.	0/1:95:58,37:58:2084:37:1328:-91.2106,0,-159.218	0/1:38:23,15:23:813:15:540:-37.497,0,-62.05	0/1:11:10,1:10:352:1:36:-0.286945,0,-28.7069	0/0:112:112,0:112:4001:0:0:0,-33.7154,-360.22	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:88:70,18:70:2512:18:648:-32.16,0,-199.828	0/0:75:72,3:72:2569:3:108:0,-12.5029,-221.384	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:72:51,21:51:1832:21:756:-46.6931,0,-143.487	0/0:141:141,0:141:5041:0:0:0,-42.4452,-453.821	0/1:64:50,14:50:1796:14:504:-26.4322,0,-142.656	0/0:49:49,0:49:1719:0:0:0,-14.7505,-154.975	0/1:66:46,20:46:1648:20:716:-44.8997,0,-128.741	0/1:76:40,36:40:1436:36:1273:-91.9926,0,-106.646	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.256	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.501	0/0:46:44,2:44:1569:2:68:0,-7.38967,-135.042	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:49:48,1:48:1701:1:36:0,-11.1522,-149.534	0/1:73:60,13:60:2126:13:468:-20.4845,0,-169.63	0/0:151:151,0:151:5377:0:0:0,-45.4555,-484.036	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.764	0/1:95:72,23:72:2565:23:824:-45.8855,0,-202.501	0/1:85:62,23:62:2204:23:820:-48.535,0,-173.038	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:98:98,0:98:3505:0:0:0,-29.5009,-315.659	0/0:88:88,0:88:3083:0:0:0,-26.4906,-277.684	0/0:152:152,0:152:5456:0:0:0,-45.7566,-491.167	0/0:62:61,1:61:2181:1:36:0,-15.066,-192.956	0/0:65:64,1:64:2273:1:36:0,-15.9687,-201.219	0/1:59:35,24:35:1252:24:845:-58.6059,0,-94.7958	0/0:105:104,1:104:3713:1:36:0,-28.0099,-330.755	0/1:39:27,12:27:942:12:428:-27.1186,0,-73.3496	0/1:77:58,19:58:2042:19:684:-38.711,0,-160.856	0/0:73:69,4:69:2461:4:144:0,-8.66157,-208.429	0/0:31:29,2:29:1040:2:72:0,-2.49521,-87.0776	0/1:84:49,35:49:1760:35:1256:-88.058,0,-133.397	0/1:66:34,32:34:1216:32:1140:-83.0408,0,-89.8786	0/0:115:114,1:114:4080:1:36:0,-31.0202,-363.76	0/0:119:113,6:113:4056:6:216:0,-16.0329,-345.429
chr04	8452462	.	A	T	24350.4	PASS	AB=0.281048;ABP=3101.03;AC=93;AF=0.494681;AN=188;AO=2101;CIGAR=1X;DP=7550;DPB=7550;DPRA=81.172;EPP=4565.27;EPPR=11831;GTI=19;LEN=1;MEANALT=1.02151;MQM=59.9024;MQMR=59.0308;NS=94;NUMALT=1;ODDS=0.406959;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74983;QR=195070;RO=5447;RPL=2086;RPP=4435.92;RPPR=11709.7;RPR=15;RUN=1;SAF=15;SAP=4435.92;SAR=2086;SRF=5433;SRP=11709.7;SRR=14;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:18,11:18:648:11:392:-26.8902,0,-49.9154	0/1:132:99,33:99:3556:33:1161:-65.0588,0,-280.495	0/1:124:57,67:57:2029:67:2400:-178.929,0,-145.519	0/1:108:66,42:66:2376:42:1508:-103.503,0,-181.546	0/1:52:32,20:32:1152:20:720:-49.4752,0,-88.3197	0/1:64:42,22:42:1508:22:792:-52.3398,0,-116.742	0/0:90:85,5:85:3056:5:172:0,-11.2747,-259.442	0/1:139:76,63:76:2720:63:2249:-160.828,0,-203.178	0/1:81:51,30:51:1836:30:1068:-72.0486,0,-141.121	0/1:76:59,17:59:2097:17:612:-32.5352,0,-166.038	0/1:106:81,25:81:2903:25:900:-49.4037,0,-229.399	0/1:106:77,28:77:2760:28:970:-55.6402,0,-216.586	0/1:104:79,25:79:2813:25:900:-49.9975,0,-222.016	0/1:159:130,29:130:4664:29:1044:-46.3947,0,-371.676	0/1:67:58,9:58:2065:9:320:-8.9651,0,-165.933	0/1:91:71,20:71:2548:20:705:-36.3791,0,-202.16	0/1:112:97,15:97:3465:15:540:-15.2212,0,-278.292	0/1:61:46,15:46:1652:15:540:-30.5737,0,-130.585	0/1:95:66,29:66:2368:29:1021:-63.6024,0,-184.766	0/1:111:87,24:87:3109:24:818:-40.5158,0,-246.605	0/1:139:101,38:101:3612:38:1364:-81.2175,0,-283.423	0/1:44:33,11:33:1165:11:388:-22.012,0,-91.9024	0/1:66:49,17:49:1752:17:604:-34.8226,0,-138.088	0/1:57:46,11:46:1644:11:396:-18.824,0,-131.064	0/1:73:35,38:35:1260:38:1348:-99.6313,0,-91.7244	0/1:164:123,41:123:4424:41:1461:-82.4014,0,-348.735	0/1:152:111,41:111:3977:41:1445:-84.5873,0,-312.325	0/1:42:34,8:34:1220:8:288:-13.6241,0,-97.3777	0/1:102:87,15:87:3120:15:540:-18.2315,0,-250.31	0/1:104:64,40:64:2296:40:1420:-96.7903,0,-175.588	0/1:89:51,38:51:1828:38:1364:-96.269,0,-137.929	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.745	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96608	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3857	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2902	0/1:200:161,39:161:5796:39:1373:-63.6606,0,-460.896	0/1:65:40,25:40:1383:25:892:-61.0327,0,-105.077	0/1:113:93,20:93:3340:20:720:-31.1124,0,-266.755	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3775	0/1:138:104,34:104:3720:34:1209:-67.572,0,-293.445	0/1:34:22,12:22:792:12:432:-28.9862,0,-61.2866	0/1:103:56,47:56:1997:47:1688:-121.201,0,-148.989	0/1:74:66,7:66:2357:7:248:-0.331222,0,-189.963	0/1:87:68,19:68:2448:19:684:-35.6974,0,-194.187	0/1:68:52,16:52:1860:16:576:-31.7049,0,-147.141	0/1:114:68,46:68:2448:46:1633:-112.939,0,-186.207	0/1:63:54,9:54:1936:9:324:-10.541,0,-155.418	0/1:54:31,23:31:1112:23:824:-57.6692,0,-84.1229	0/1:109:77,32:77:2760:32:1148:-70.8176,0,-215.662	0/1:88:61,27:61:2196:27:972:-61.3073,0,-170.994	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/1:114:79,35:79:2829:35:1252:-78.6539,0,-220.51	0/1:48:35,13:35:1233:13:468:-28.0102,0,-96.69	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:99:55,44:55:1972:44:1572:-111.97,0,-147.88	0/1:35:19,16:19:680:16:576:-41.6389,0,-50.9573	0/1:4:2,2:2:68:2:68:-5.25359,0,-5.25225	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:97:73,24:73:2624:24:852:-47.8005,0,-207.178	0/1:143:120,23:120:4301:23:824:-31.436,0,-343.81	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.5672	0/1:61:46,15:46:1656:15:540:-30.5737,0,-130.963	0/1:108:63,45:63:2249:45:1608:-112.499,0,-170.133	0/1:58:44,14:44:1576:14:504:-28.2384,0,-124.643	0/1:35:23,12:23:828:12:432:-28.6851,0,-64.2879	0/1:72:60,12:60:2148:12:424:-16.8223,0,-171.905	0/1:91:75,16:75:2681:16:572:-24.1774,0,-214.129	0/1:48:36,12:36:1292:12:432:-24.7718,0,-101.916	0/1:68:46,22:46:1644:22:788:-50.7748,0,-127.754	0/1:130:113,17:113:4041:17:589:-14.183,0,-324.604	0/0:15:14,1:14:504:1:36:0,-0.917175,-42.0962	0/1:42:33,9:33:1184:9:320:-16.4991,0,-94.2073	0/1:66:41,25:41:1468:25:892:-60.7317,0,-112.545	0/1:140:83,57:83:2972:57:2048:-142.447,0,-225.455	0/1:104:65,39:65:2332:39:1399:-94.9021,0,-178.667	0/1:103:77,26:77:2741:26:923:-52.3813,0,-215.916	0/1:97:64,33:64:2292:33:1184:-77.6684,0,-177.194	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:72:44,28:44:1576:28:996:-68.2807,0,-120.308	0/1:68:55,13:55:1961:13:460:-21.2653,0,-156.272	0/1:122:72,50:72:2588:50:1796:-125.197,0,-196.421	0/1:103:83,20:83:2984:20:712:-33.4006,0,-237.59	0/1:85:64,21:64:2304:21:756:-42.7659,0,-181.846	0/1:77:69,8:69:2465:8:284:-2.71579,0,-198.906	0/1:137:108,29:108:3861:29:1029:-51.6719,0,-306.01	0/1:44:29,15:29:1040:15:536:-35.3295,0,-80.4027	0/1:110:77,33:77:2764:33:1165:-72.0413,0,-215.817	0/1:99:74,25:74:2660:25:896:-51.1584,0,-209.558	0/1:58:49,9:49:1760:9:324:-12.0461,0,-141.182	0/1:148:119,29:119:4234:29:1044:-49.7224,0,-336.56	0/1:79:62,17:62:2220:17:597:-30.2748,0,-176.273	0/1:97:57,40:57:2029:40:1432:-99.9777,0,-153.664	0/1:153:114,39:114:4073:39:1404:-80.5935,0,-320.42
chr04	8452489	.	C	T	84513.1	PASS	AB=0.337193;ABP=818.253;AC=141;AF=0.758065;AN=186;AO=4092;CIGAR=1X;DP=6467;DPB=6467;DPRA=14.0478;EPP=8578.73;EPPR=58.8852;GTI=10;LEN=1;MEANALT=1.04348;MQM=58.6342;MQMR=39.2771;NS=93;NUMALT=1;ODDS=1.42997;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146483;QR=84373;RO=2371;RPL=28;RPP=8647.13;RPPR=5030.69;RPR=4064;RUN=1;SAF=4084;SAP=8819.32;SAR=8;SRF=1323;SRP=72.2712;SRR=1048;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:23,5:23:820:5:180:-8.11651,0,-42.5468	1/1:100:0,100:0:0:100:3588:-323.11,-30.103,0	1/1:56:0,56:0:0:56:2012:-181.306,-16.8577,0	1/1:66:3,63:3:108:63:2247:-196.874,-14.2726,0	1/1:33:0,33:0:0:33:1184:-106.852,-9.93399,0	1/1:41:0,41:0:0:41:1459:-131.599,-12.3422,0	0/1:115:78,37:78:2783:37:1328:-84.4631,0,-156.662	1/1:75:0,75:0:0:75:2673:-240.792,-22.5773,0	0/1:74:52,22:52:1832:22:784:-48.5913,0,-94.3679	1/1:59:0,58:0:0:58:2084:-187.537,-17.4597,0	1/1:84:0,84:0:0:84:2992:-269.368,-25.2865,0	1/1:78:2,76:2:72:76:2723:-238.444,-16.6436,0	1/1:79:0,79:0:0:79:2832:-255.048,-23.7814,0	1/1:128:1,127:1:27:127:4537:-405.504,-35.8321,0	0/1:98:67,31:67:2400:31:1116:-71.2259,0,-110.975	0/1:85:57,28:57:2044:28:1004:-65.0742,0,-126.269	1/1:97:0,97:0:0:97:3483:-313.621,-29.1999,0	0/1:64:42,22:42:1496:22:792:-52.3187,0,-70.193	0/1:75:36,39:36:1288:39:1392:-102.988,0,-75.2328	0/1:134:100,33:100:3569:33:1176:-65.7391,0,-178.802	0/1:123:90,33:90:3203:33:1188:-70.1727,0,-205.227	0/1:58:45,13:45:1596:13:468:-24.9935,0,-86.3336	0/1:70:47,23:47:1654:23:828:-53.765,0,-86.6239	1/1:48:6,42:6:216:42:1484:-120.632,-1.25863,0	1/1:32:0,32:0:0:32:1144:-103.264,-9.63296,0	0/1:193:125,68:125:4460:68:2440:-161.627,0,-233.003	0/1:135:84,51:84:3000:51:1828:-124.126,0,-174.343	1/1:34:0,34:0:0:34:1224:-110.381,-10.235,0	0/1:134:99,35:99:3536:35:1256:-72.9969,0,-198.59	0/1:80:40,40:40:1432:40:1432:-104.311,0,-70.171	1/1:51:0,51:0:0:51:1824:-164.361,-15.3525,0	0/1:8:4,4:4:144:4:144:-10.9044,0,-4.24568	0/1:7:5,2:5:180:2:72:-4.7276,0,-5.61325	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.0269,-2.10721,0	0/1:12:6,6:6:216:6:216:-16.1769,0,-9.0302	1/1:162:0,162:0:0:162:5811:-521.603,-48.7669,0	1/1:38:0,38:0:0:38:1360:-122.584,-11.4391,0	0/1:122:77,45:77:2764:45:1616:-108.959,0,-147.038	0/1:5:3,2:3:108:2:72:-5.33062,0,-8.5696	0/1:122:66,56:66:2339:56:2012:-144.613,0,-128.966	1/1:23:0,23:0:0:23:824:-73.9067,-6.92369,0	0/1:81:57,24:57:2014:24:864:-53.6955,0,-98.1322	0/1:98:61,37:61:2171:37:1328:-89.6048,0,-99.7456	1/1:68:0,68:0:0:68:2421:-217.998,-20.47,0	0/1:60:28,32:28:996:32:1148:-85.5571,0,-47.2928	0/1:95:69,26:69:2442:26:936:-55.9438,0,-126.177	0/1:98:74,24:74:2636:24:856:-47.5496,0,-123.04	1/1:31:0,31:0:0:31:1098:-99.1167,-9.33193,0	1/1:78:1,77:1:36:77:2756:-246.833,-22.282,0	1/1:60:0,60:0:0:60:2143:-192.816,-18.0618,0	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/1:101:70,31:70:2494:31:1112:-69.9819,0,-143.106	0/1:43:32,11:32:1140:11:390:-22.4542,0,-76.646	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:54:1,53:1:36:53:1900:-167.607,-12.6573,0	1/1:18:0,18:0:0:18:648:-58.6455,-5.41854,0	1/1:2:0,2:0:0:2:72:-6.83481,-0.60206,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-12.1383	0/1:92:48,44:48:1712:44:1576:-114.41,0,-85.5363	1/1:125:1,123:1:36:123:4428:-394.66,-34.0893,0	1/1:3:0,3:0:0:3:108:-10.0724,-0.90309,0	0/1:72:55,17:55:1949:17:608:-33.3751,0,-111.932	1/1:64:2,62:2:72:62:2201:-195.376,-16.4222,0	0/1:46:24,22:24:837:22:788:-57.3713,0,-51.3073	1/1:22:0,22:0:0:22:788:-71.2252,-6.62266,0	0/1:117:84,33:84:2990:33:1184:-71.6396,0,-123.75	0/1:126:105,21:105:3733:21:756:-30.4137,0,-193.045	1/1:39:0,39:0:0:39:1400:-126.127,-11.7402,0	1/1:46:0,46:0:0:46:1638:-147.675,-13.8474,0	1/1:111:0,111:0:0:111:3992:-359.323,-33.4143,0	0/1:23:16,7:16:576:7:252:-15.3134,0,-27.8521	1/1:32:0,32:0:0:32:1148:-103.613,-9.63296,0	0/1:52:31,21:31:1103:21:756:-52.7109,0,-53.406	1/1:84:0,84:0:0:84:3012:-270.409,-25.2865,0	1/1:65:0,65:0:0:65:2321:-209.107,-19.567,0	0/1:107:65,42:65:2285:42:1491:-102.26,0,-104.918	0/1:88:50,38:50:1775:38:1342:-94.4868,0,-83.0376	0/0:5:5,0:5:176:0:0:0,-1.50515,-4.59413	1/1:44:0,44:0:0:44:1576:-141.982,-13.2453,0	1/1:55:1,54:1:36:54:1924:-169.826,-12.9584,0	1/1:73:0,73:0:0:73:2616:-235.655,-21.9752,0	1/1:83:0,83:0:0:83:2961:-266.54,-24.9855,0	1/1:61:0,61:0:0:61:2192:-197.347,-18.3628,0	0/1:111:80,31:80:2855:31:1099:-65.7807,0,-136.95	1/1:111:2,109:2:72:109:3886:-347.204,-31.1374,0	0/1:44:29,15:29:1040:15:540:-35.4237,0,-45.6975	0/1:105:61,44:61:2167:44:1571:-110.002,0,-96.8865	1/1:74:0,74:0:0:74:2651:-238.641,-22.2762,0	1/1:50:0,50:0:0:50:1792:-161.52,-15.0515,0	0/1:122:64,58:64:2272:58:2066:-149.355,0,-152.868	0/1:109:89,20:89:3147:20:720:-32.3031,0,-160.916	1/1:58:0,58:0:0:58:2071:-186.64,-17.4597,0	1/1:113:0,112:0:0:112:4024:-361.703,-33.7154,0
chr04	8574626	.	T	C	2.68469e-11	PASS	AB=0.312234;ABP=6055.32;AC=70;AF=0.37234;AN=188;AO=7443;CIGAR=1X;DP=26227;DPB=26227;DPRA=0;EPP=16165.3;EPPR=40761.5;GTI=69;LEN=1;MEANALT=1.14894;MQM=14.6127;MQMR=19.4585;NS=94;NUMALT=1;ODDS=29.7628;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266379;QR=672823;RO=18770;RPL=0;RPP=16165.3;RPPR=40761.5;RPR=7443;RUN=1;SAF=7443;SAP=16165.3;SAR=0;SRF=18770;SRP=40761.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:148:111,37:111:3976:37:1328:-4.16969,0,-171.459	0/1:377:223,154:223:7996:154:5520:-83.365,0,-214.971	0/1:245:111,134:111:3980:134:4776:-98.7498,0,-105.661	0/1:727:514,212:514:18440:212:7588:-50.368,0,-650.413	0/0:196:150,46:150:5368:46:1652:0,-3.76031,-229.399	0/1:139:98,41:98:3497:41:1460:-13.4624,0,-161.442	0/1:107:81,26:81:2912:26:928:-3.22345,0,-91.9258	0/1:467:272,194:272:9756:194:6926:-111.953,0,-300.931	0/1:248:174,74:174:6240:74:2643:-29.3742,0,-221.373	0/1:408:302,106:302:10829:106:3804:-18.6158,0,-381.312	0/1:120:74,46:74:2664:46:1640:-22.7045,0,-93.5456	0/1:149:103,46:103:3696:46:1644:-12.6229,0,-176.971	0/1:118:73,45:73:2624:45:1608:-22.6936,0,-85.3751	0/1:142:101,41:101:3613:41:1468:-9.99814,0,-109.313	0/1:146:103,43:103:3696:43:1540:-10.3776,0,-83.9101	0/1:130:89,41:89:3177:41:1464:-16.3397,0,-112.272	0/1:98:58,39:58:2073:39:1400:-22.091,0,-59.5939	0/1:83:48,35:48:1724:35:1252:-25.1937,0,-46.5569	0/1:95:70,25:70:2516:25:900:-2.14453,0,-125.464	0/1:504:356,148:356:12776:148:5304:-43.0122,0,-472.41	0/1:445:301,144:301:10792:144:5164:-50.5119,0,-369.098	0/1:377:231,146:231:8300:146:5220:-79.2855,0,-185.765	0/1:211:165,46:165:5908:46:1652:-1.94046,0,-195.798	0/0:489:379,109:379:13608:109:3904:0,-9.61758,-463.826	0/0:146:116,30:116:4144:30:1068:0,-1.24075,-178.663	0/1:963:662,301:662:23748:301:10788:-84.9973,0,-727.519	0/1:428:310,117:310:11112:117:4208:-18.1298,0,-395.361	0/1:84:51,33:51:1828:33:1184:-13.3892,0,-65.8224	0/1:640:478,162:478:17160:162:5812:-13.0255,0,-512.618	0/0:594:482,112:482:17296:112:4005:0,-40.8141,-752.979	0/1:227:162,65:162:5789:65:2317:-13.8083,0,-143.277	0/1:438:296,141:296:10632:141:5044:-60.4696,0,-420.009	0/1:74:56,18:56:2016:18:648:-0.402072,0,-93.8523	0/0:245:194,51:194:6944:51:1828:0,-2.48205,-275.977	0/1:52:28,24:28:1004:24:852:-15.1019,0,-42.8905	0/0:159:138,21:138:4948:21:748:0,-18.0049,-255.618	0/1:378:251,127:251:9004:127:4536:-41.5597,0,-199.754	0/1:615:445,170:445:15909:170:6099:-32.8187,0,-698.625	0/0:118:92,26:92:3312:26:919:0,-0.713401,-164.208	0/0:96:75,21:75:2684:21:756:0,-2.2515,-123.894	0/1:300:187,113:187:6696:113:4040:-52.9059,0,-159.841	0/0:91:68,22:68:2448:22:788:0,-1.66644,-88.6603	0/1:605:453,152:453:16229:152:5436:-13.5523,0,-653.709	0/1:219:152,67:152:5460:67:2400:-18.8993,0,-224.121	0/1:145:92,53:92:3272:53:1896:-21.0722,0,-77.2877	0/1:246:155,90:155:5564:90:3220:-44.7381,0,-222.883	0/1:418:265,153:265:9472:153:5473:-69.7689,0,-336.31	0/0:529:411,118:411:14715:118:4218:0,-6.34884,-437.03	0/0:426:339,86:339:12160:86:3084:0,-19.4548,-473.14	0/1:439:309,129:309:11080:129:4632:-41.4509,0,-380.671	0/1:420:267,152:267:9580:152:5432:-73.5055,0,-313.154	0/0:185:144,41:144:5172:41:1460:0,-0.624545,-221.282	0/1:313:216,97:216:7748:97:3475:-31.5763,0,-366.282	0/0:35:29,6:29:1044:6:216:0,-1.78718,-45.9585	0/0:326:293,33:293:10516:33:1176:0,-56.276,-492.312	0/1:343:222,121:222:7929:121:4332:-56.5472,0,-205.316	0/0:106:88,18:88:3148:18:644:0,-10.7556,-132.122	0/0:129:100,28:100:3588:28:1000:0,-5.24182,-178.504	0/1:264:200,64:200:7163:64:2300:-0.539491,0,-315.954	0/1:125:89,36:89:3188:36:1284:-7.26852,0,-119.83	0/1:283:212,71:212:7571:71:2548:-5.06269,0,-208.03	0/1:220:169,51:169:6060:51:1828:-4.03417,0,-281.937	0/1:556:385,171:385:13804:171:6124:-45.8722,0,-470.808	0/0:625:481,143:481:17233:143:5116:0,-7.41533,-503.108	0/0:262:201,61:201:7200:61:2192:0,-4.71034,-247.942	0/1:256:190,66:190:6784:66:2364:-10.4824,0,-168.248	0/1:598:418,180:418:14934:180:6460:-53.616,0,-576.196	0/1:202:142,60:142:5058:60:2152:-17.9643,0,-142.852	0/1:71:49,22:49:1741:22:792:-6.2659,0,-81.6775	0/1:230:147,83:147:5268:83:2964:-47.8727,0,-215.798	0/1:198:152,46:152:5451:46:1636:-4.91555,0,-144.088	0/0:193:171,22:171:6124:22:788:0,-30.7738,-292.584	0/1:177:125,52:125:4480:52:1860:-12.1497,0,-176.932	0/1:101:39,62:39:1388:62:2216:-52.3092,0,-36.1449	0/1:343:243,100:243:8724:100:3572:-24.4874,0,-247.508	0/0:454:364,90:364:13084:90:3224:0,-21.9096,-406.76	0/1:275:200,75:200:7160:75:2692:-22.8821,0,-285.172	0/1:300:190,110:190:6824:110:3932:-50.219,0,-269.758	0/0:340:303,37:303:10880:37:1320:0,-49.6446,-613.088	0/1:399:294,105:294:10544:105:3759:-13.5205,0,-406.661	0/1:268:181,87:181:6462:87:3084:-31.9451,0,-272.003	0/1:694:501,193:501:17976:193:6920:-38.2089,0,-536.693	0/1:231:170,60:170:6112:60:2148:-7.38622,0,-149.149	0/1:104:76,28:76:2728:28:1008:-1.62031,0,-59.7001	0/0:237:183,54:183:6556:54:1940:0,-0.847764,-194.459	0/1:331:239,92:239:8549:92:3288:-15.8777,0,-346.419	0/1:104:79,25:79:2840:25:892:-1.0352,0,-122.767	0/1:139:79,60:79:2840:60:2136:-38.4783,0,-123.611	0/1:137:90,47:90:3236:47:1684:-21.1482,0,-131.902	0/1:86:53,33:53:1904:33:1176:-16.223,0,-78.7053	0/1:127:89,38:89:3181:38:1364:-11.0782,0,-130.88	0/1:114:68,46:68:2432:46:1652:-24.4622,0,-109.549	0/0:277:221,56:221:7944:56:1993:0,-6.41516,-200.712	0/0:205:164,41:164:5888:41:1452:0,-7.63549,-174.009
chr04	8574635	.	TAGAGGGAGAGGT	TGGAGGGAGAGGT,TAGAGAGAAGT	153368	PASS	AB=0.316888,0.17766;ABP=7470.38,23207.8;AC=82,26;AF=0.43617,0.138298;AN=188;AO=8149,4928;CIGAR=1M1X11M,4M2D4M1X2M;DP=26170;DPB=25392.6;DPRA=0,0;EPP=17698.3,10704;EPPR=27893.4;GTI=37;LEN=1,11;MEANALT=3.84946,3.82979;MQM=44.1477,28.1808;MQMR=16.6533;NS=94;NUMALT=2;ODDS=1.48034;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=290479,137189;QR=452652;RO=12844;RPL=0,0;RPP=17698.3,10704;RPPR=27893.4;RPR=8149,4928;RUN=1,1;SAF=8149,4928;SAP=17698.3,10704;SAR=0,0;SRF=12844;SRP=27893.4;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	0/1:150:65,61,23:65:2276:61,23:2176,637:-154.798,0,-92.3565,-130.01,-66.3304,-233.758	0/1:380:159,179,31:159:5622:179,31:6343,876:-459.486,0,-101.014,-445.985,-93.5045,-591.549	0/1:266:139,90,33:139:4907:90,33:3179,928:-212.472,0,-103.626,-189.452,-65.8095,-310.21	0/1:638:363,174,95:363:12810:174,95:6208,2615:-387.152,0,-399.46,-313.983,-269.346,-737.166	0/1:247:117,92,37:117:4136:92,37:3258,1030:-225.053,0,-131.101,-188.272,-86.752,-335.889	0/1:136:73,38,23:73:2565:38,23:1340,652:-84.9845,0,-111.972,-61.2274,-77.6385,-177.664	0/1:115:67,39,8:67:2342:39,8:1385,224:-90.6582,0,-66.8596,-95.2569,-63.0042,-171.419	0/1:448:208,156,78:208:7264:156,78:5547,2192:-380.881,0,-161.909,-290.565,-55.8819,-475.918	0/1:229:104,104,18:104:3642:104,18:3682,494:-262.717,0,-128.745,-259.668,-125.676,-414.272	0/1:350:181,95,73:181:6365:95,73:3390,2030:-216.287,0,-183.321,-129.447,-70.5245,-319.329	1/2:136:65,36,35:65:2292:36,35:1292,977:-96.0768,-12.4499,-57.5611,-47.338,0,-92.6857	0/1:167:79,58,30:79:2771:58,30:2062,840:-140.946,0,-110.819,-106.31,-69.8178,-225.506	1/2:143:47,70,24:47:1652:70,24:2503,672:-188.727,-2.45679,-25.7238,-156.139,0,-193.242	0/1:154:71,51,28:71:2505:51,28:1820,770:-124.344,0,-42.7641,-92.0565,-4.3917,-141.706	0/1:150:87,50,11:87:3092:50,11:1781,308:-116.353,0,-52.5566,-121.128,-46.1625,-185.408	0/1:126:85,30,10:85:3016:30,10:1080,280:-60.9334,0,-102.126,-67.0618,-91.6661,-175.145	0/1:130:44,70,13:44:1549:70,13:2473,350:-184.613,0,-23.1569,-173.802,-20.1384,-214.108	0/1:85:35,39,10:35:1224:39,10:1400,274:-101.704,0,-27.2142,-93.3174,-19.9923,-129.244	1/2:98:38,25,35:38:1352:25,35:886,981:-70.6462,-11.3159,-61.1637,-13.4761,0,-60.2514	0/1:519:254,162,95:254:8951:162,95:5805,2643:-388.319,0,-255.953,-280.418,-120.302,-556.49	0/1:419:231,119,64:231:8120:119,64:4228,1805:-268.532,0,-234.433,-211.786,-143.922,-462.726	0/1:390:249,103,31:249:8795:103,31:3681,854:-219.912,0,-181.59,-235.352,-153.045,-438.571	0/1:183:94,67,20:94:3330:67,20:2354,556:-159.118,0,-103.033,-148.444,-84.1995,-265.591	1/2:518:243,156,115:243:8581:156,115:5524,3184:-379.004,-11.4623,-175.131,-230.14,0,-406.101	0/1:171:75,67,29:75:2634:67,29:2408,812:-170.382,0,-96.2615,-136.488,-59.916,-244.143	1/2:1120:529,368,213:529:18645:368,213:13115,5963:-890.32,-0.75735,-305.733,-633.124,0,-984.719	0/1:452:242,176,30:242:8522:176,30:6260,839:-427.438,0,-269.063,-441.674,-263.41,-754.657	0/1:90:58,27,5:58:2049:27,5:956,140:-58.3743,0,-63.6198,-66.1071,-61.9995,-136.303	0/1:571:298,146,119:298:10520:146,119:5229,3295:-328.433,0,-195.84,-188.614,-10.1887,-392.522	0/1:556:267,164,119:267:9446:164,119:5865,3302:-389.177,0,-330.523,-239.404,-149.686,-583.417	0/1:233:109,100,20:109:3820:100,20:3592,560:-254.732,0,-56.1938,-248.594,-47.3115,-328.867	0/2:329:157,17,149:157:5519:17,149:608,4174:-243.804,-242.397,-389.18,0,-103.102,-106.926	1/2:72:26,12,34:26:922:12,34:428,924:-60.3663,-33.914,-60.9569,-3.74753,0,-24.0751	0/2:147:51,9,82:51:1793:9,82:324,2293:-145.571,-134.925,-187.209,0,-28.8918,-30.2236	0/2:46:25,3,18:25:871:3,18:108,507:-27.9119,-26.7787,-49.7569,0,-15.0887,-18.3375	0/2:118:24,6,85:24:834:6,85:216,2349:-156.864,-146.793,-175.811,0,-13.4122,-5.144	0/1:476:247,195,30:247:8749:195,30:6977,850:-483.408,0,-129.88,-498.191,-128.982,-677.735	0/1:684:329,194,157:329:11586:194,157:6853,4362:-447.713,0,-386.434,-242.51,-140.529,-640.025	1/2:128:43,41,44:43:1499:41,44:1457,1232:-120.236,-16.5565,-73.4043,-47.5042,0,-103.397	0/2:72:24,0,47:24:858:0,47:0,1310:-83.8999,-91.1247,-112.961,0,-21.6596,-7.51123	0/1:389:199,154,34:199:7003:154,34:5478,946:-378.579,0,-117.589,-372.598,-98.0258,-526.293	1/2:100:48,22,27:48:1712:22,27:792,749:-65.0011,-16.0147,-45.5948,-27.3251,0,-55.3331	0/1:564:262,151,143:262:9249:151,143:5407,3986:-353.739,0,-295.281,-154.407,-62.4651,-452.037	0/1:283:126,120,36:126:4480:120,36:4293,1002:-306.066,0,-138.111,-274.034,-104.236,-437.395	0/1:180:87,77,15:87:3073:77,15:2709,420:-190.003,0,-49.0339,-186.982,-42.9702,-254.675	0/1:294:158,98,36:158:5572:98,36:3516,998:-234.118,0,-182.879,-211.813,-142.473,-413.304	1/2:405:156,147,100:156:5509:147,100:5225,2802:-419.097,-48.5973,-151.273,-270.615,0,-387.4	0/1:546:289,149,104:289:10159:149,104:5315,2882:-337.583,0,-174.009,-223.565,-17.7727,-411.066	0/1:373:197,118,54:197:6932:118,54:4222,1488:-278.429,0,-243.14,-234.51,-175.397,-496.863	0/1:364:215,104,37:215:7581:104,37:3705,1037:-231.615,0,-246.767,-223.7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chr04	8655723	.	ACTA	ACTG	85448.4	PASS	AB=0.490769;ABP=4.93456;AC=141;AF=0.758065;AN=186;AO=4040;CIGAR=3M1X;DP=5385;DPB=5385;DPRA=19.5;EPP=8741.05;EPPR=2849.84;GTI=1;LEN=1;MEANALT=1.22826;MQM=59.9832;MQMR=59.9917;NS=93;NUMALT=1;ODDS=2.47222;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144445;QR=46870;RO=1319;RPL=4036;RPP=8741.05;RPPR=2849.84;RPR=4;RUN=1;SAF=0;SAP=8775.76;SAR=4040;SRF=0;SRP=2867.18;SRR=1319;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:13,20:13:455:20:720:-55.1948,0,-31.3474	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:76:0,75:0:0:75:2663:-239.549,-22.5773,0	1/1:115:0,114:0:0:114:4062:-365.405,-34.3174,0	1/1:22:0,21:0:0:21:756:-68.0836,-6.32163,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:78:49,28:49:1749:28:1008:-67.4972,0,-134.155	1/1:77:0,77:0:0:77:2750:-247.73,-23.1793,0	0/1:68:31,37:31:1102:37:1319:-98.541,0,-79.0195	1/1:81:0,79:0:0:79:2821:-253.768,-23.7814,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:83:0,82:0:0:82:2927:-263.351,-24.6845,0	1/1:57:0,56:0:0:56:2012:-180.993,-16.8577,0	1/1:46:0,46:0:0:46:1643:-148.158,-13.8474,0	0/1:50:23,27:23:828:27:963:-71.9344,0,-59.7926	0/1:30:11,18:11:389:18:648:-49.6,0,-26.295	1/1:28:0,28:0:0:28:985:-88.9615,-8.42884,0	0/1:20:7,13:7:252:13:464:-36.0769,0,-17.0084	0/1:32:14,18:14:499:18:648:-49.0189,0,-35.6128	0/1:95:48,47:48:1719:47:1688:-123.609,0,-126.398	0/1:54:29,25:29:1024:25:900:-65.0654,0,-76.2158	0/1:67:38,24:38:1360:24:860:-58.7017,0,-103.681	0/1:73:37,36:37:1320:36:1292:-94.6086,0,-97.1268	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:170:93,77:93:3297:77:2727:-194.497,0,-245.775	0/1:117:58,58:58:2061:58:2061:-150.48,0,-150.482	1/1:17:0,15:0:0:15:540:-48.5767,-4.51545,0	0/1:131:61,69:61:2182:69:2480:-183.959,0,-157.152	0/1:111:48,63:48:1703:63:2249:-169.257,0,-120.142	1/1:118:0,118:0:0:118:4212:-379.261,-35.5215,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:18:7,11:7:252:11:388:-29.8388,0,-17.6104	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:138:0,138:0:0:138:4952:-445.828,-41.5421,0	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	0/1:56:27,29:27:968:29:1044:-77.4171,0,-70.58	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:63:27,36:27:951:36:1288:-97.2587,0,-66.9389	1/1:30:0,30:0:0:30:1071:-96.7016,-9.0309,0	0/1:80:31,48:31:1100:48:1716:-130.652,0,-75.2366	0/1:36:15,21:15:533:21:748:-56.8076,0,-37.466	1/1:47:0,47:0:0:47:1665:-150.135,-14.1484,0	0/1:73:27,46:27:946:46:1648:-126.633,0,-63.4781	0/1:44:20,24:20:707:24:860:-64.4765,0,-50.71	0/1:128:75,53:75:2669:53:1888:-131.667,0,-201.924	1/1:69:0,68:0:0:68:2436:-219.293,-20.47,0	1/1:77:0,76:0:0:76:2732:-245.772,-22.8783,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:67:39,28:39:1385:28:993:-69.5135,0,-104.779	0/1:47:24,23:24:846:23:820:-59.9741,0,-62.3109	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:57:0,57:0:0:57:1998:-180.09,-17.1587,0	1/1:27:0,27:0:0:27:967:-87.3471,-8.12781,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/1:42:28,14:28:988:14:500:-32.6929,0,-76.5897	1/1:139:0,138:0:0:138:4949:-445.198,-41.5421,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:108:60,48:60:2129:48:1716:-122.214,0,-159.365	1/1:101:0,101:0:0:101:3616:-325.638,-30.404,0	0/1:36:17,19:17:599:19:684:-51.0532,0,-43.4011	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:105:51,54:51:1825:54:1936:-142.908,0,-132.923	0/1:93:59,34:59:2103:34:1224:-82.4708,0,-161.544	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:45:0,44:0:0:44:1568:-141.062,-13.2453,0	0/1:19:10,9:10:352:9:324:-23.7863,0,-26.2981	1/1:80:0,80:0:0:80:2827:-254.665,-24.0824,0	0/1:52:18,34:18:630:34:1216:-94.093,0,-41.3722	1/1:109:0,107:0:0:107:3817:-343.375,-32.2102,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	0/1:46:31,15:31:1101:15:540:-35.0892,0,-85.5527	0/1:18:12,6:12:415:6:216:-14.372,0,-32.2615	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	1/1:48:0,48:0:0:48:1717:-154.814,-14.4494,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:123:0,122:0:0:122:4360:-392.314,-36.7257,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:44:0,44:0:0:44:1569:-141.5,-13.2453,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	1/1:92:1,91:1:36:91:3263:-290.291,-24.0965,0	0/1:22:10,12:10:358:12:428:-32.2361,0,-25.9403	0/1:71:41,30:41:1458:30:1070:-75.2389,0,-110.143	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	0/1:146:64,82:64:2275:82:2935:-220.433,0,-161.061	0/1:52:37,15:37:1300:15:540:-33.283,0,-101.645	1/1:85:0,85:0:0:85:3037:-273.559,-25.5876,0	1/1:78:0,78:0:0:78:2774:-249.899,-23.4803,0
chr04	8655854	.	C	T	19834	PASS	AB=0.582845;ABP=114.905;AC=44;AF=0.236559;AN=186;AO=1103;CIGAR=1X;DP=3337;DPB=3337;DPRA=1.59897;EPP=2152.88;EPPR=4647.86;GTI=7;LEN=1;MEANALT=1;MQM=59.8577;MQMR=59.9982;NS=93;NUMALT=1;ODDS=0.288844;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39208;QR=79283;RO=2234;RPL=1074;RPP=2152.88;RPPR=4647.86;RPR=29;RUN=1;SAF=1103;SAP=2398.14;SAR=0;SRF=2234;SRP=4854.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:5,14:5:180:14:500:-39.6166,0,-10.8325	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/0:72:72,0:72:2543:0:0:0,-21.6742,-229.119	0/0:23:22,1:22:783:1:36:0,-3.32541,-67.1947	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:41:22,19:22:784:19:684:-49.5481,0,-58.5417	0/0:51:48,3:48:1688:3:108:0,-5.27736,-142.128	0/1:34:18,16:18:621:16:561:-40.5821,0,-45.9762	0/0:52:52,0:52:1839:0:0:0,-15.6536,-165.79	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:19:6,13:6:212:13:468:-36.7401,0,-13.7052	0/1:13:8,5:8:288:5:171:-11.8121,0,-22.354	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:85:35,50:35:1242:50:1784:-135.255,0,-86.4955	0/1:67:24,43:24:852:43:1524:-117.245,0,-56.8314	0/1:34:4,30:4:144:30:1074:-86.7374,0,-3.0786	0/1:52:20,32:20:690:32:1139:-87.1626,0,-46.7632	0/0:22:22,0:22:769:0:0:0,-6.62266,-69.5286	0/0:22:22,0:22:760:0:0:0,-6.62266,-68.7159	0/1:134:60,74:60:2139:74:2629:-195.414,0,-152.439	0/1:98:52,46:52:1848:46:1648:-119.108,0,-137.096	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:71:24,47:24:856:47:1669:-129.122,0,-55.988	0/1:115:59,56:59:2064:56:1980:-143.855,0,-151.408	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:52:52,0:52:1839:0:0:0,-15.6536,-165.79	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	.:.:.:.:.:.:.:.	0/1:62:31,31:31:1084:31:1099:-80.5556,0,-79.2023	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:32:14,18:14:500:18:644:-48.6576,0,-35.7032	0/1:9:3,6:3:104:6:203:-15.8919,0,-6.99354	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:44:20,24:20:701:24:849:-63.4841,0,-50.1664	0/1:11:5,6:5:180:6:216:-16.2861,0,-13.2407	0/1:70:28,42:28:1000:42:1496:-113.635,0,-69.2433	0/0:60:60,0:60:2124:0:0:0,-18.0618,-191.426	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:54:24,30:24:856:30:1068:-80.1764,0,-61.1055	0/1:62:21,41:21:732:41:1453:-112.402,0,-47.5348	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:18:12,6:12:417:6:216:-14.372,0,-32.4417	0/1:44:21,23:21:737:23:805:-59.5222,0,-53.4053	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:131:57,74:57:2028:74:2626:-197.151,0,-143.355	0/0:83:80,3:80:2829:3:108:0,-14.9103,-244.771	0/1:43:26,17:26:936:17:604:-41.7463,0,-71.6152	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:51:21,30:21:756:30:1059:-80.2679,0,-53.0147	0/1:151:36,115:36:1284:115:4095:-322.177,0,-70.4079	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/1:45:12,33:12:432:33:1188:-93.6822,0,-25.6748	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.536	0/1:58:38,20:38:1345:20:708:-46.5859,0,-103.888	0/0:67:67,0:67:2375:0:0:0,-20.169,-214.008	0/0:99:99,0:99:3518:0:0:0,-29.802,-316.828	0/1:35:7,28:7:252:28:995:-79.328,0,-12.4929	0/1:44:14,30:14:500:30:1071:-83.4563,0,-32.0909	0/1:23:12,11:12:428:11:388:-28.3337,0,-31.9351	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:138:138,0:138:4904:0:0:0,-41.5421,-441.51	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/1:13:6,7:6:201:7:243:-18.2941,0,-14.5037	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/1:33:14,19:14:500:19:667:-50.4206,0,-35.4022	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.083	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883
chr04	8787288	.	G	A	87879.4	PASS	AB=0.500646;ABP=3.03836;AC=45;AF=0.239362;AN=188;AO=3898;CIGAR=1X;DP=16219;DPB=16219;DPRA=1.2892;EPP=8467.41;EPPR=26729.5;GTI=1;LEN=1;MEANALT=1.07143;MQM=59.805;MQMR=59.9903;NS=94;NUMALT=1;ODDS=3.39647;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138092;QR=433339;RO=12312;RPL=1825;RPP=37.2725;RPPR=111.417;RPR=2073;RUN=1;SAF=1825;SAP=37.2725;SAR=2073;SRF=5765;SRP=110.865;SRR=6547;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:90:45,45:45:1560:45:1565:-113.938,0,-113.595	0/0:214:214,0:214:7516:0:0:0,-64.4204,-676.492	0/0:257:257,0:257:9032:0:0:0,-77.3647,-812.606	0/0:373:371,2:371:13020:2:72:0,-105.447,-1164.8	0/0:133:131,1:131:4621:1:36:0,-36.4975,-412.458	0/0:128:128,0:128:4467:0:0:0,-38.5318,-402.204	0/1:371:168,203:168:5882:203:7210:-537.254,0,-417.819	0/0:289:289,0:289:10236:0:0:0,-86.9977,-921.179	0/1:258:135,123:135:4744:123:4360:-314.903,0,-349.453	0/0:225:225,0:225:7909:0:0:0,-67.7317,-711.849	0/0:94:94,0:94:3269:0:0:0,-28.2968,-294.431	0/0:128:128,0:128:4442:0:0:0,-38.5318,-399.962	0/0:123:123,0:123:4263:0:0:0,-37.0267,-383.852	0/0:116:116,0:116:4082:0:0:0,-34.9195,-367.569	0/1:131:69,62:69:2410:62:2204:-159.188,0,-177.72	0/1:114:60,54:60:2113:54:1904:-137.313,0,-156.12	0/0:104:103,1:103:3606:1:36:0,-27.7088,-321.154	0/1:102:54,48:54:1893:48:1719:-124.092,0,-139.941	0/1:74:32,42:32:1125:42:1482:-111.315,0,-79.2798	0/1:449:229,219:229:8061:219:7752:-562.476,0,-590.3	0/1:350:188,162:188:6581:162:5760:-413.089,0,-487.02	0/1:90:42,48:42:1483:48:1693:-125.56,0,-106.671	0/1:152:82,70:82:2921:70:2491:-178.68,0,-217.367	0/0:228:222,6:222:7828:6:208:0,-49.5758,-685.501	0/0:180:179,1:179:6301:1:36:0,-50.5871,-563.591	0/1:516:247,269:247:8788:269:9563:-705.29,0,-635.579	0/1:352:160,191:160:5673:191:6778:-504.095,0,-404.71	0/0:63:63,0:63:2191:0:0:0,-18.9649,-197.457	0/1:460:228,232:228:8089:232:8206:-600.069,0,-589.56	0/1:179:95,84:95:3342:84:2955:-212.238,0,-247.114	0/0:255:253,2:253:8874:2:72:0,-69.9259,-791.82	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:28:14,14:14:487:14:495:-36.4542,0,-35.7304	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/0:274:274,0:274:9666:0:0:0,-82.4822,-869.904	0/0:205:205,0:205:7250:0:0:0,-61.7111,-652.561	0/1:123:66,57:66:2326:57:2001:-143.319,0,-172.571	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:279:160,119:160:5653:119:4244:-298.146,0,-424.908	0/0:77:77,0:77:2708:0:0:0,-23.1793,-243.964	0/1:230:115,115:115:4053:115:4088:-298.863,0,-295.722	0/1:136:76,60:76:2654:60:2093:-147.679,0,-198.166	0/0:115:115,0:115:3996:0:0:0,-34.6184,-359.798	0/1:207:125,82:125:4400:82:2918:-200.542,0,-333.862	0/1:205:91,114:91:3239:114:4037:-301.801,0,-229.975	0/1:227:97,129:97:3406:129:4579:-343.878,0,-238.361	0/0:211:211,0:211:7423:0:0:0,-63.5173,-668.123	0/0:250:249,0:249:8793:0:0:0,-74.9565,-791.009	0/0:275:274,1:274:9598:1:36:0,-79.185,-860.171	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:262:142,120:142:5004:120:4208:-300.024,0,-371.641	0/1:89:52,37:52:1828:37:1296:-90.1467,0,-138.007	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:248:247,0:247:8688:0:0:0,-74.3544,-781.567	0/0:117:117,0:117:4163:0:0:0,-35.2205,-374.855	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:43:29,14:29:1024:14:504:-32.7538,0,-79.5279	0/1:151:91,60:91:3248:60:2107:-144.441,0,-247.086	0/0:145:144,1:144:5038:1:36:0,-40.0511,-449.975	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:173:91,82:91:3235:82:2879:-207.266,0,-239.295	0/0:293:288,5:288:10156:5:180:0,-71.6497,-897.434	0/1:172:108,64:108:3796:64:2251:-151.058,0,-290.062	0/0:142:142,0:142:5022:0:0:0,-42.7463,-452.13	0/1:339:166,173:166:5815:173:6129:-448.584,0,-421.419	0/1:193:58,135:58:2056:135:4792:-373.329,0,-127.21	0/0:55:55,0:55:1947:0:0:0,-16.5566,-175.505	0/0:175:175,0:175:6126:0:0:0,-52.6802,-551.454	0/0:122:122,0:122:4295:0:0:0,-36.7257,-386.731	0/1:46:25,21:25:896:21:744:-53.4369,0,-67.113	0/0:173:172,1:172:6057:1:32:0,-48.8789,-542.037	0/1:146:71,75:71:2496:75:2643:-194.14,0,-180.942	0/0:404:404,0:404:14230:0:0:0,-121.616,-1280.48	0/0:254:254,0:254:9010:0:0:0,-76.4616,-810.885	0/1:189:83,106:83:2934:106:3770:-282.577,0,-207.401	0/1:202:92,110:92:3218:110:3928:-292.897,0,-229.034	0/1:18:5,13:5:180:13:468:-37.0411,0,-11.1335	0/0:215:214,1:214:7539:1:36:0,-61.1232,-674.958	0/0:246:246,0:246:8621:0:0:0,-74.0534,-775.9	0/0:513:512,1:512:18090:1:36:0,-150.83,-1624.12	0/0:172:172,0:172:6091:0:0:0,-51.7772,-548.297	0/0:106:106,0:106:3742:0:0:0,-31.9092,-336.984	0/1:157:74,83:74:2573:83:2941:-217.648,0,-184.557	0/0:235:234,0:234:8185:0:0:0,-70.441,-736.25	0/1:61:33,28:33:1171:28:991:-71.1407,0,-87.3338	0/1:107:47,60:47:1653:60:2125:-159.307,0,-116.845	0/0:107:107,0:107:3737:0:0:0,-32.2102,-336.535	0/0:84:84,0:84:2956:0:0:0,-25.2865,-266.274	0/1:146:61,85:61:2146:85:3028:-228.795,0,-149.454	0/1:101:45,56:45:1555:56:1983:-148.339,0,-109.833	0/0:142:142,0:142:4980:0:0:0,-42.7463,-448.35	0/0:156:154,0:154:5423:0:0:0,-46.3586,-487.865
chr04	8787315	.	TGCCT	CGCCT	34700.7	PASS	AB=0.494256;ABP=4.20778;AC=43;AF=0.231183;AN=186;AO=2077;CIGAR=1X4M;DP=8828;DPB=8828;DPRA=1.33361;EPP=4513.16;EPPR=14450.1;GTI=1;LEN=1;MEANALT=1.4;MQM=59.7082;MQMR=59.9712;NS=93;NUMALT=1;ODDS=2.08627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74259;QR=237126;RO=6713;RPL=2077;RPP=4513.16;RPPR=14450.1;RPR=0;RUN=1;SAF=0;SAP=4513.16;SAR=2077;SRF=0;SRP=14580.1;SRR=6713;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:28,26:28:977:26:932:-67.7845,0,-71.9863	0/0:114:113,0:113:4018:0:0:0,-34.0164,-361.452	0/0:171:171,0:171:6067:0:0:0,-51.4761,-546.14	0/0:205:203,1:203:7141:1:36:0,-58.0968,-639.238	0/0:77:77,0:77:2750:0:0:0,-23.1793,-247.743	0/0:63:62,0:62:2186:0:0:0,-18.6639,-196.646	0/1:221:104,116:104:3643:116:4141:-306.308,0,-261.561	0/0:150:150,0:150:5260:0:0:0,-45.1545,-473.544	0/1:132:76,55:76:2671:55:1980:-138.672,0,-200.825	0/0:127:124,0:124:4392:0:0:0,-37.3277,-395.098	0/0:39:39,0:39:1366:0:0:0,-11.7402,-123.236	0/0:65:65,0:65:2303:0:0:0,-19.5669,-207.532	0/0:54:54,0:54:1920:0:0:0,-16.2556,-173.076	0/0:59:59,0:59:2091:0:0:0,-17.7608,-188.46	0/1:70:34,36:34:1211:36:1287:-95.0575,0,-88.224	0/1:50:25,25:25:882:25:900:-66.2649,0,-64.6458	0/0:46:46,0:46:1583:0:0:0,-13.8474,-142.699	0/1:47:32,15:32:1136:15:540:-34.5889,0,-88.4005	0/1:33:8,22:8:286:22:788:-61.8414,0,-16.6983	0/1:259:115,143:115:4086:143:5115:-382.449,0,-289.903	0/1:182:103,79:103:3623:79:2832:-200.261,0,-271.489	0/1:59:26,33:26:913:33:1176:-88.3857,0,-64.7247	0/1:107:67,40:67:2362:40:1436:-97.3213,0,-180.629	0/0:136:132,3:132:4677:3:108:0,-30.9237,-411.021	0/0:116:114,1:114:4020:1:36:0,-31.38,-358.395	0/1:260:118,142:118:4176:142:5073:-378.438,0,-297.759	0/1:178:77,100:77:2712:100:3567:-267.573,0,-190.682	0/0:34:34,0:34:1173:0:0:0,-10.235,-105.87	0/1:287:133,154:133:4736:154:5501:-408.765,0,-340.006	0/1:93:50,43:50:1764:43:1540:-110.81,0,-131.046	0/0:140:139,1:139:4924:1:36:0,-38.5459,-439.717	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:130:129,0:129:4578:0:0:0,-38.8329,-411.868	0/0:119:118,0:118:4129:0:0:0,-35.5215,-371.44	0/1:56:29,26:29:1037:26:927:-66.8138,0,-76.7277	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:164:103,61:103:3618:61:2171:-146.285,0,-276.46	0/0:34:34,0:34:1188:0:0:0,-10.235,-107.224	0/1:133:71,61:71:2512:61:2175:-155.99,0,-186.317	0/1:65:43,22:43:1530:22:792:-52.0387,0,-118.426	0/0:70:69,0:69:2419:0:0:0,-20.7711,-217.717	0/1:122:74,48:74:2645:48:1720:-118.36,0,-201.572	0/1:106:47,59:47:1665:59:2116:-158.791,0,-118.122	0/1:133:54,78:54:1858:78:2783:-210.608,0,-127.401	0/0:133:133,0:133:4754:0:0:0,-40.037,-428.007	0/0:135:134,0:134:4743:0:0:0,-40.338,-426.628	0/0:153:152,1:152:5375:1:36:0,-42.4593,-480.246	.:.:.:.:.:.:.:.	0/1:158:81,76:81:2850:76:2698:-195.441,0,-209.118	0/1:50:29,21:29:1028:21:752:-52.9548,0,-77.7815	0/0:6:6,0:6:211:0:0:0,-1.80618,-19.3333	0/0:134:132,0:132:4637:0:0:0,-39.736,-417.213	0/0:72:71,0:71:2506:0:0:0,-21.3731,-225.433	0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4604	0/1:20:14,6:14:487:6:216:-13.7699,0,-38.138	0/1:81:54,27:54:1901:27:964:-62.6934,0,-146.985	0/0:70:69,1:69:2426:1:36:0,-17.4738,-214.998	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:93:44,49:44:1567:49:1752:-129.964,0,-113.327	0/0:170:170,0:170:6017:0:0:0,-51.1751,-541.642	0/1:86:54,32:54:1883:32:1148:-77.7182,0,-143.857	0/0:70:70,0:70:2455:0:0:0,-21.0721,-221.205	0/1:216:105,109:105:3693:109:3883:-284.331,0,-267.797	0/1:96:24,72:24:847:72:2568:-202.443,0,-47.6508	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3415	0/0:122:121,0:121:4280:0:0:0,-36.4246,-385.171	0/0:60:59,0:59:2103:0:0:0,-17.7608,-189.179	0/1:24:13,11:13:461:11:396:-28.758,0,-34.6012	0/0:108:107,1:107:3784:1:36:0,-28.913,-337.165	0/1:71:33,36:33:1157:36:1292:-95.4335,0,-83.3088	0/0:209:208,0:208:7337:0:0:0,-62.6142,-660.178	0/0:160:159,0:159:5646:0:0:0,-47.8638,-507.905	0/1:84:43,40:43:1506:40:1436:-104.241,0,-110.544	0/1:106:49,55:49:1740:55:1980:-146.808,0,-125.217	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:104:104,0:104:3691:0:0:0,-31.3071,-332.394	0/0:154:154,0:154:5439:0:0:0,-46.3586,-489.645	0/0:260:257,2:257:9059:2:72:0,-71.4633,-808.484	0/0:89:89,0:89:3143:0:0:0,-26.7917,-283.098	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.152	0/1:86:46,40:46:1628:40:1440:-103.992,0,-120.92	0/0:123:123,0:123:4338:0:0:0,-37.0267,-390.53	0/1:27:15,12:15:535:12:428:-30.731,0,-40.357	0/1:47:20,27:20:715:27:968:-73.289,0,-50.5294	0/0:54:54,0:54:1904:0:0:0,-16.2556,-171.637	0/0:43:43,0:43:1530:0:0:0,-12.9443,-137.992	0/1:57:26,31:26:909:31:1103:-82.4149,0,-64.9652	0/1:53:21,32:21:748:32:1131:-86.1422,0,-51.6913	0/0:78:78,0:78:2762:0:0:0,-23.4803,-248.822	0/0:83:83,0:83:2944:0:0:0,-24.9855,-265.195
chr04	8787487	.	AAG	AAA	79468.1	PASS	AB=0.394783;ABP=279.467;AC=142;AF=0.755319;AN=188;AO=3961;CIGAR=2M1X;DP=5733;DPB=5733.33;DPRA=8.28696;EPP=8604.21;EPPR=3826.97;GTI=3;LEN=1;MEANALT=1.08696;MQM=59.9662;MQMR=59.9824;NS=94;NUMALT=1;ODDS=0.747393;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=16;PQR=0;PRO=0;QA=138752;QR=61783;RO=1761;RPL=0;RPP=8604.21;RPPR=3826.97;RPR=3961;RUN=1;SAF=3961;SAP=8604.21;SAR=0;SRF=1761;SRP=3826.97;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:16,6:16:559:6:216:-13.1679,0,-44.0148	1/1:36:0,36:0:0:36:1262:-113.878,-10.8371,0	1/1:78:0,78:0:0:78:2747:-247.469,-23.4803,0	1/1:98:0,98:0:0:98:3410:-307.109,-29.5009,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	0/1:63:42,21:42:1476:21:718:-45.9691,0,-114.168	1/1:100:0,99:0:0:99:3495:-313.771,-29.802,0	0/1:75:51,24:51:1780:24:826:-52.0744,0,-137.904	1/1:38:0,34:0:0:34:1204:-108.307,-10.235,0	1/1:63:0,63:0:0:63:2200:-198.259,-18.9649,0	1/1:91:0,91:0:0:91:3230:-290.92,-27.3937,0	1/1:78:2,76:2:72:76:2683:-234.875,-16.6436,0	1/1:105:0,105:0:0:105:3727:-335.628,-31.6082,0	0/1:46:26,20:26:934:20:720:-51.2814,0,-70.5319	0/1:88:45,43:45:1567:43:1483:-107.267,0,-114.828	1/1:42:0,42:0:0:42:1470:-132.59,-12.6433,0	0/1:45:26,19:26:912:19:665:-46.6264,0,-68.8478	0/1:56:29,27:29:1025:27:923:-66.5175,0,-75.7049	0/1:95:61,34:61:2159:34:1205:-80.156,0,-165.979	0/1:103:61,42:61:2148:42:1441:-98.9691,0,-162.58	0/1:53:37,16:37:1294:16:576:-36.2204,0,-100.787	0/1:47:31,16:31:1083:16:546:-35.3109,0,-83.6291	1/1:45:2,43:2:72:43:1487:-127.28,-6.70963,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:101:56,45:56:1958:45:1578:-111.902,0,-146.09	0/1:121:71,50:71:2470:50:1765:-122.707,0,-186.129	1/1:27:0,27:0:0:27:938:-84.7293,-8.12781,0	0/1:109:62,47:62:2166:47:1649:-115.882,0,-162.392	0/1:62:43,19:43:1512:19:635:-38.7962,0,-117.709	1/1:64:0,64:0:0:64:2272:-204.743,-19.2659,0	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2595	0/1:23:11,12:11:387:12:432:-32.2975,0,-28.2431	1/1:9:0,9:0:0:9:320:-29.139,-2.70927,0	1/1:10:0,10:0:0:10:330:-30.0171,-3.0103,0	0/1:47:25,22:25:860:22:732:-52.036,0,-63.5635	1/1:126:0,126:0:0:126:4449:-400.578,-37.9298,0	1/1:49:0,49:0:0:49:1722:-155.261,-14.7505,0	0/1:86:53,33:53:1879:33:1188:-81.34,0,-143.5	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9448	0/1:59:35,23:35:1252:23:790:-53.5936,0,-95.166	1/1:52:0,52:0:0:52:1829:-164.858,-15.6536,0	0/1:95:61,34:61:2150:34:1203:-79.9764,0,-165.169	0/1:63:36,27:36:1261:27:949:-66.7579,0,-94.8261	1/1:42:1,41:1:36:41:1389:-121.697,-9.04499,0	0/1:70:30,40:30:1063:40:1338:-99.632,0,-74.9091	0/1:74:48,26:48:1665:26:898:-58.853,0,-127.859	0/1:102:49,52:49:1743:52:1837:-134.953,0,-126.497	1/1:35:1,34:1:34:34:1186:-103.642,-7.13714,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:38:0,38:0:0:38:1338:-120.716,-11.4391,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:95:55,40:55:1956:40:1368:-94.8107,0,-147.718	0/1:52:33,19:33:1130:19:654:-43.524,0,-86.3473	1/1:19:0,19:0:0:19:635:-57.46,-5.71957,0	1/1:82:0,82:0:0:82:2902:-261.414,-24.6845,0	1/1:23:0,23:0:0:23:794:-71.7687,-6.92369,0	1/1:11:0,10:0:0:10:352:-31.6591,-3.0103,0	0/1:10:3,7:3:92:7:252:-20.0187,0,-5.57425	0/1:58:35,23:35:1216:23:812:-55.8094,0,-92.2813	1/1:101:1,99:1:36:99:3432:-305.553,-26.7996,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:106:48,58:48:1667:58:2024:-150.517,0,-118.404	1/1:59:1,58:1:36:58:1979:-174.774,-14.1625,0	0/1:38:28,10:28:987:10:360:-21.3052,0,-77.7044	1/1:46:0,46:0:0:46:1602:-144.406,-13.8474,0	0/1:87:63,24:63:2183:24:819:-47.8287,0,-170.547	0/1:112:88,24:88:3081:24:837:-41.9303,0,-243.806	1/1:73:0,73:0:0:73:2549:-229.654,-21.9752,0	1/1:33:0,33:0:0:33:1177:-106.229,-9.93399,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:16:7,9:7:237:9:320:-24.3259,0,-16.8426	1/1:87:0,87:0:0:87:3049:-274.626,-26.1896,0	0/1:59:38,21:38:1336:21:741:-49.2508,0,-102.774	1/1:74:0,73:0:0:73:2526:-227.303,-21.9752,0	1/1:71:0,71:0:0:71:2512:-226.33,-21.3731,0	0/1:67:36,31:36:1263:31:1035:-73.2756,0,-93.8031	0/1:88:46,42:46:1620:42:1496:-108.443,0,-119.599	0/1:9:6,3:6:206:3:108:-7.3659,0,-16.166	1/1:69:0,69:0:0:69:2440:-219.851,-20.7711,0	1/1:50:0,49:0:0:49:1700:-152.904,-14.7505,0	1/1:83:0,83:0:0:83:2908:-261.952,-24.9855,0	1/1:71:0,71:0:0:71:2496:-224.887,-21.3731,0	1/1:65:0,65:0:0:65:2309:-208.068,-19.567,0	0/1:29:17,12:17:599:12:428:-30.1289,0,-45.5086	1/1:96:0,96:0:0:96:3338:-300.634,-28.8989,0	0/1:29:14,15:14:471:15:536:-39.8449,0,-33.9809	0/1:75:48,27:48:1701:27:972:-65.2207,0,-130.798	1/1:61:0,61:0:0:61:2157:-194.396,-18.3628,0	1/1:75:0,75:0:0:75:2609:-235.053,-22.5773,0	0/1:159:105,54:105:3707:54:1917:-124.942,0,-285.971	0/1:81:63,18:63:2225:18:614:-31.1935,0,-176.131	1/1:63:0,63:0:0:63:2147:-193.487,-18.9649,0	1/1:94:0,94:0:0:94:3296:-296.857,-28.2968,0
chr04	8787522	.	C	T	30105.7	PASS	AB=0.596541;ABP=232.352;AC=46;AF=0.244681;AN=188;AO=1713;CIGAR=1X;DP=5701;DPB=5701;DPRA=1.20402;EPP=3705.39;EPPR=8636.79;GTI=1;LEN=1;MEANALT=1.05882;MQM=59.9819;MQMR=59.9784;NS=94;NUMALT=1;ODDS=1.31324;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61116;QR=141459;RO=3984;RPL=1710;RPP=3696.73;RPPR=8619.45;RPR=3;RUN=1;SAF=1712;SAP=3714.06;SAR=1;SRF=3982;SRP=8636.79;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:8,15:8:288:15:536:-41.6511,0,-19.3437	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.59	0/0:96:96,0:96:3399:0:0:0,-28.8989,-306.125	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:63:21,42:21:743:42:1503:-116.599,0,-48.2284	0/0:99:98,1:98:3486:1:32:0,-26.6027,-310.752	0/1:74:25,48:25:896:48:1705:-131.398,0,-58.6254	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.859	0/0:68:68,0:68:2405:0:0:0,-20.47,-216.703	0/0:96:96,0:96:3370:0:0:0,-28.8989,-303.445	0/0:79:78,1:78:2784:1:36:0,-20.1831,-247.2	0/0:105:105,0:105:3712:0:0:0,-31.6081,-334.283	0/1:47:21,26:21:756:26:936:-70.4111,0,-54.2188	0/1:84:41,43:41:1467:43:1535:-113.156,0,-107.039	0/0:42:42,0:42:1448:0:0:0,-12.6433,-130.609	0/1:45:19,26:19:667:26:932:-70.6525,0,-46.8083	0/1:57:28,29:28:995:29:1031:-75.9439,0,-72.7053	0/1:94:34,60:34:1216:60:2156:-166.01,0,-81.4497	0/1:99:42,57:42:1491:57:2034:-153.529,0,-104.682	0/1:54:17,37:17:603:37:1297:-100.766,0,-38.3439	0/1:48:17,31:17:603:31:1112:-85.9419,0,-40.1501	0/0:44:42,2:42:1485:2:72:0,-6.4086,-127.106	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:100:45,55:45:1589:55:1953:-145.941,0,-113.195	0/1:120:53,67:53:1904:67:2378:-178.153,0,-135.514	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/1:106:47,59:47:1664:59:2120:-159.151,0,-118.131	0/1:60:18,42:18:644:42:1508:-117.953,0,-40.2288	0/0:64:64,0:64:2246:0:0:0,-19.2659,-202.401	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:23:12,11:12:432:11:387:-28.2422,0,-32.2975	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8951	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7361	0/1:46:22,24:22:784:24:850:-62.9709,0,-57.0365	0/0:127:127,0:127:4506:0:0:0,-38.2308,-405.709	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:88:34,54:34:1220:54:1936:-148.026,0,-83.6162	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:58:24,34:24:847:34:1212:-91.9266,0,-59.089	0/0:51:51,0:51:1786:0:0:0,-15.3525,-160.99	0/1:95:35,60:35:1252:60:2151:-165.259,0,-84.3872	0/1:62:26,36:26:912:36:1287:-97.4689,0,-63.7292	0/0:42:42,0:42:1468:0:0:0,-12.6433,-132.412	0/1:69:39,30:39:1400:30:1063:-75.2099,0,-105.528	0/1:73:26,47:26:904:47:1680:-129.512,0,-59.6967	0/1:104:54,48:54:1905:48:1728:-124.74,0,-140.661	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:54:53,1:53:1896:1:36:0,-12.6573,-167.32	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:95:40,55:40:1409:55:1972:-149.157,0,-98.5074	0/1:52:18,34:18:644:34:1203:-92.9215,0,-42.637	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:81:81,0:81:2873:0:0:0,-24.3834,-258.804	0/0:24:24,0:24:838:0:0:0,-7.22472,-75.7345	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:56:23,33:23:824:33:1184:-90.0106,0,-57.6256	0/0:101:100,1:100:3558:1:36:0,-26.8058,-316.828	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:103:57,46:57:2029:46:1632:-116.162,0,-151.875	0/0:58:57,1:57:2025:1:36:0,-13.8615,-178.923	0/1:37:10,27:10:351:27:956:-75.2176,0,-20.7886	0/0:43:43,0:43:1511:0:0:0,-12.9443,-136.277	0/1:84:24,60:24:828:60:2152:-168.661,0,-49.5467	0/1:109:23,86:23:828:86:3059:-242.726,0,-42.0318	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/0:33:32,0:32:1143:0:0:0,-9.63296,-102.974	0/0:42:42,0:42:1484:0:0:0,-12.6433,-133.852	0/1:16:9,7:9:324:7:239:-17.0262,0,-24.6894	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.205	0/1:57:20,37:20:711:37:1319:-101.839,0,-47.1569	0/0:79:79,0:79:2811:0:0:0,-23.7814,-253.23	0/0:70:69,1:69:2446:1:36:0,-17.4738,-216.796	0/1:64:30,34:30:1072:34:1220:-90.8409,0,-77.5265	0/1:84:40,44:40:1410:44:1584:-117.565,0,-101.909	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:70:70,0:70:2483:0:0:0,-21.0721,-223.724	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.924	0/0:63:63,0:63:2232:0:0:0,-18.9649,-201.142	0/1:28:12,16:12:432:16:572:-43.3846,0,-30.7924	0/0:99:99,0:99:3494:0:0:0,-29.802,-314.669	0/1:29:15,14:15:540:14:496:-36.2444,0,-40.2067	0/1:73:28,45:28:999:45:1611:-123.304,0,-68.2493	0/0:62:62,0:62:2199:0:0:0,-18.6639,-198.172	0/0:74:74,0:74:2621:0:0:0,-22.2762,-236.137	0/1:151:52,99:52:1845:99:3500:-269.754,0,-120.873	0/1:83:20,63:20:711:63:2247:-177.507,0,-39.3302	0/0:63:63,0:63:2246:0:0:0,-18.9649,-202.402	0/0:94:94,0:94:3343:0:0:0,-28.2968,-301.086
chr04	8808939	.	T	C	39657.3	PASS	AB=0.513886;ABP=10.6691;AC=45;AF=0.239362;AN=188;AO=2356;CIGAR=1X;DP=9765;DPB=9765;DPRA=1.02811;EPP=5110.32;EPPR=16061.1;GTI=1;LEN=1;MEANALT=1.04167;MQM=59.9567;MQMR=59.9938;NS=94;NUMALT=1;ODDS=5.64496;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83676;QR=263564;RO=7407;RPL=2355;RPP=5110.32;RPPR=16052.4;RPR=1;RUN=1;SAF=2356;SAP=5119;SAR=0;SRF=7406;SRP=16078.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3053	0/0:150:150,0:150:5361:0:0:0,-45.1545,-482.621	0/0:94:93,1:93:3328:1:32:0,-25.0975,-296.539	0/0:194:194,0:194:6874:0:0:0,-58.3998,-618.724	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/1:162:93,69:93:3320:69:2469:-173.682,0,-250.252	0/0:99:98,1:98:3484:1:36:0,-26.2037,-310.172	0/1:107:46,61:46:1648:61:2162:-162.636,0,-116.398	0/0:106:106,0:106:3774:0:0:0,-31.9092,-339.86	0/0:155:155,0:155:5524:0:0:0,-46.6596,-497.289	0/0:83:83,0:83:2956:0:0:0,-24.9855,-266.275	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:169:169,0:169:6005:0:0:0,-50.8741,-540.549	0/1:55:33,22:33:1188:22:771:-53.1537,0,-90.6719	0/1:60:25,35:25:888:35:1219:-91.947,0,-62.1772	0/0:112:112,0:112:3918:0:0:0,-33.7154,-352.816	0/1:58:30,28:30:1059:28:1004:-73.2161,0,-78.1607	0/1:79:36,42:36:1272:42:1496:-111.133,0,-90.9817	0/1:186:87,99:87:3098:99:3532:-262.099,0,-223.056	0/1:183:106,77:106:3767:77:2700:-188.151,0,-284.143	0/1:86:26,60:26:936:60:2132:-166.26,0,-58.6709	0/1:67:33,34:33:1168:34:1216:-89.5776,0,-85.2582	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:259:141,118:141:5044:118:4199:-300.126,0,-376.139	0/1:204:94,110:94:3359:110:3911:-290.772,0,-241.116	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:246:119,127:119:4255:127:4523:-333.186,0,-309.075	0/1:193:104,89:104:3633:89:3188:-229.045,0,-269.077	0/0:136:136,0:136:4803:0:0:0,-40.9401,-432.428	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:22:6,16:6:216:16:572:-45.1908,0,-13.1679	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:17:5,12:5:180:12:428:-33.7413,0,-11.4346	0/0:228:228,0:228:8084:0:0:0,-68.6348,-727.584	0/0:241:241,0:241:8571:0:0:0,-72.5482,-771.39	0/1:137:67,70:67:2375:70:2461:-180.503,0,-172.767	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:142:75,67:75:2684:67:2360:-169.911,0,-199.059	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/1:154:76,78:76:2687:78:2785:-204.531,0,-195.717	0/1:74:38,36:38:1352:36:1277:-92.9252,0,-99.7041	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.44	0/1:69:29,40:29:1028:40:1436:-108.756,0,-72.062	0/1:84:35,49:35:1240:49:1735:-131.147,0,-86.6179	0/1:136:72,64:72:2557:64:2265:-163.171,0,-189.439	0/0:86:86,0:86:3042:0:0:0,-25.8886,-274.009	0/0:189:189,0:189:6747:0:0:0,-56.8947,-607.306	0/0:144:144,0:144:5126:0:0:0,-43.3483,-461.482	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:125:66,58:66:2357:58:2067:-148.758,0,-174.847	0/1:40:26,14:26:936:14:500:-33.295,0,-72.5174	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:147:147,0:147:5247:0:0:0,-44.2514,-472.368	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:29:12,17:12:428:17:604:-45.9602,0,-30.1289	0/1:149:65,84:65:2328:84:2967:-222.409,0,-164.926	0/0:200:200,0:200:7093:0:0:0,-60.206,-638.437	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:127:76,51:76:2724:51:1828:-126.57,0,-207.172	0/0:199:197,2:197:7019:2:72:0,-53.0682,-624.937	0/1:86:38,48:38:1345:48:1707:-128.027,0,-95.4596	0/0:88:87,1:87:3084:1:36:0,-22.8924,-274.189	0/1:86:35,51:35:1240:51:1806:-136.931,0,-86.0159	0/1:157:57,100:57:2036:100:3554:-272.806,0,-136.251	0/0:71:71,0:71:2504:0:0:0,-21.3731,-225.614	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:114:114,0:114:4060:0:0:0,-34.3174,-365.589	0/1:60:25,35:25:892:35:1248:-94.5631,0,-62.5379	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/1:75:40,35:40:1421:35:1248:-90.0476,0,-105.608	0/0:251:251,0:251:8928:0:0:0,-75.5585,-803.508	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.284	0/1:153:75,78:75:2672:78:2755:-202.133,0,-194.669	0/1:135:63,72:63:2234:72:2577:-191.537,0,-160.682	0/1:8:3,5:3:104:5:176:-13.7768,0,-7.29457	0/0:126:126,0:126:4528:0:0:0,-37.9298,-407.685	0/0:100:100,0:100:3572:0:0:0,-30.103,-321.688	0/0:167:167,0:167:5971:0:0:0,-50.272,-537.497	0/0:111:111,0:111:3940:0:0:0,-33.4143,-354.793	0/0:67:67,0:67:2352:0:0:0,-20.169,-211.938	0/1:90:49,41:49:1751:41:1455:-104.153,0,-130.781	0/0:139:139,0:139:4936:0:0:0,-41.8432,-444.323	0/1:31:9,22:9:316:22:775:-60.7393,0,-19.4469	0/1:97:51,46:51:1820:46:1621:-116.977,0,-134.881	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.082	0/0:99:99,0:99:3502:0:0:0,-29.802,-315.39	0/1:239:110,129:110:3869:129:4583:-340.692,0,-276.461	0/1:67:25,42:25:888:42:1468:-112.198,0,-60.07	0/0:87:87,0:87:3072:0:0:0,-26.1896,-276.709	0/0:78:78,0:78:2777:0:0:0,-23.4803,-250.17
chr04	9019765	.	C	A	23831.9	PASS	AB=0.529612;ABP=25.3873;AC=42;AF=0.228261;AN=184;AO=1571;CIGAR=1X;DP=5654;DPB=5654;DPRA=1.35608;EPP=3405.71;EPPR=8849.59;GTI=5;LEN=1;MEANALT=1.04444;MQM=39.3851;MQMR=59.7813;NS=92;NUMALT=1;ODDS=0.521365;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56029;QR=145631;RO=4078;RPL=1;RPP=3405.71;RPPR=8849.59;RPR=1570;RUN=1;SAF=1571;SAP=3414.39;SAR=0;SRF=4078;SRP=8858.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:4,22:4:140:22:792:-57.4826,0,-5.1178	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.99	0/0:102:102,0:102:3635:0:0:0,-30.7051,-326.918	0/0:132:128,4:128:4561:4:144:0,-27.566,-398.467	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5748	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5567	0/1:70:33,37:33:1180:37:1328:-93.7539,0,-85.4359	0/0:62:58,2:58:2068:2:72:0,-11.5858,-179.487	0/1:88:46,42:46:1652:42:1493:-99.2018,0,-122.448	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.933	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.117	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.232	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1926	0/1:56:30,25:30:1059:25:884:-59.4112,0,-78.7116	0/1:53:25,28:25:896:28:1004:-69.3232,0,-65.0058	0/0:22:21,0:21:752:0:0:0,-6.32163,-67.6756	0/1:27:18,9:18:648:9:320:-19.0698,0,-50.5241	0/1:28:11,17:11:396:17:612:-38.5493,0,-27.5448	0/1:116:55,61:55:1960:61:2178:-152.78,0,-141.751	0/1:55:25,30:25:896:30:1068:-73.2094,0,-64.3955	0/1:123:42,81:42:1512:81:2904:-217.399,0,-99.3479	0/1:103:44,59:44:1561:59:2108:-149.904,0,-109.771	0/0:19:18,1:18:644:1:36:0,-2.26508,-54.8361	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.572	0/1:169:87,82:87:3105:82:2902:-203.484,0,-228.802	0/1:219:118,101:118:4216:101:3571:-236.878,0,-313.654	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:157:76,81:76:2720:81:2904:-204.214,0,-196.744	0/1:70:33,37:33:1188:37:1308:-89.2896,0,-86.1565	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.135	0/1:4:2,2:2:72:2:72:-4.96358,0,-5.6326	1/1:7:0,7:0:0:7:252:-20.4013,-2.10721,0	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0742	0/1:8:2,6:2:72:6:216:-14.7718,0,-4.42753	0/0:190:190,0:190:6795:0:0:0,-57.1957,-611.622	0/0:90:90,0:90:3212:0:0:0,-27.0927,-289.106	0/1:40:14,26:14:496:26:928:-63.3792,0,-32.9036	.:.:.:.:.:.:.:.	0/1:99:54,45:54:1924:45:1596:-104.95,0,-143.612	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:98:53,45:53:1888:45:1605:-108.351,0,-140.68	0/1:35:19,16:19:680:16:576:-39.6856,0,-50.9898	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.026	0/1:120:53,67:53:1888:67:2375:-171.445,0,-134.074	0/1:87:51,36:51:1824:36:1277:-79.4371,0,-138.242	0/1:86:44,42:44:1572:42:1473:-100.601,0,-115.883	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.838	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:36:35,1:35:1260:1:36:0,-7.41348,-110.282	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:96:48,48:48:1701:48:1697:-112.511,0,-124.474	0/1:49:28,21:28:995:21:756:-50.8736,0,-75.1135	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.319	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.849	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:34:14,20:14:485:20:716:-50.761,0,-33.742	0/0:69:69,0:69:2462:0:0:0,-20.7711,-221.832	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:110:53,57:53:1891:57:2048:-146.092,0,-137.354	0/0:99:99,0:99:3535:0:0:0,-29.802,-318.357	0/1:38:28,10:28:999:10:360:-19.1851,0,-78.7854	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.577	0/1:128:59,69:59:2087:69:2472:-173.871,0,-149.069	0/1:108:25,83:25:900:83:2980:-225.178,0,-48.8098	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.827	0/0:49:49,0:49:1738:0:0:0,-14.7505,-156.68	0/1:18:10,8:10:351:8:284:-19.1229,0,-26.5081	0/0:152:152,0:152:5423:0:0:0,-45.7566,-487.817	0/1:65:32,33:32:1144:33:1169:-76.176,0,-83.5108	0/0:95:94,0:94:3348:0:0:0,-28.2968,-301.133	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.614	0/1:82:20,62:20:720:62:2217:-158.15,0,-40.4425	0/1:32:15,17:15:531:17:612:-40.4084,0,-38.4889	.:.:.:.:.:.:.:.	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.618	0/0:59:59,0:59:2098:0:0:0,-17.7608,-189.069	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.234	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.017	0/1:29:13,16:13:459:16:576:-41.3499,0,-32.9142	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.797	0/1:27:13,14:13:468:14:504:-33.2185,0,-34.2958	0/1:61:34,27:34:1211:27:972:-61.7897,0,-90.9309	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.386	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:64:30,34:30:1076:34:1207:-82.7576,0,-77.8869	0/1:60:20,40:20:712:40:1425:-104.698,0,-46.3449	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.95	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.237
chr04	9019794	.	GTTG	GTAG,GTA	113971	PASS	AB=0.465594,0.529955;ABP=33.0444,25.7769;AC=142,42;AF=0.771739,0.228261;AN=184;AO=4010,1563;CIGAR=2M1X1M,1M1D1M1X;DP=5602;DPB=5210.75;DPRA=8.78336,1.38789;EPP=8710.61,3397.02;EPPR=9.52472;GTI=5;LEN=1,3;MEANALT=1.76923,2.28261;MQM=59.8187,39.3832;MQMR=49.3333;NS=92;NUMALT=2;ODDS=0.829039;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=141302,54750;QR=89;RO=3;RPL=4010,1563;RPP=8710.61,3397.02;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=4010,1563;SAP=8710.61,3397.02;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,4,22:0:0:4,22:144,771:-69.138,-57.3825,-56.1784,-12.1095,0,-5.48684	1/1:40:0,39,0:0:0:39,0:1383,0:-124.415,-11.7402,0,-124.415,-11.7402,-124.415	1/1:97:0,95,1:0:0:95,1:3340,35:-300.439,-28.5979,0,-297.648,-25.7464,-297.347	1/1:129:0,125,4:0:0:125,4:4409,144:-396.64,-37.6288,0,-386.004,-26.6629,-384.8	1/1:8:0,8,0:0:0:8,0:271,0:-24.674,-2.40824,0,-24.674,-2.40824,-24.674	1/1:27:0,27,0:0:0:27,0:936,0:-84.5508,-8.12781,0,-84.5508,-8.12781,-84.5508	1/2:69:0,33,36:0:0:33,36:1160,1247:-191.834,-97.4037,-87.4697,-94.7727,0,-83.9356	1/1:61:0,61,0:0:0:61,0:2158,0:-194.456,-18.3628,0,-194.456,-18.3628,-194.456	1/2:90:0,48,41:0:0:48,41:1670,1410:-242.744,-106.976,-92.5261,-135.764,0,-123.422	1/1:46:0,46,0:0:0:46,0:1609,0:-145.097,-13.8474,0,-145.097,-13.8474,-145.097	1/1:34:0,34,0:0:0:34,0:1194,0:-107.761,-10.235,0,-107.761,-10.235,-107.761	1/1:64:0,64,0:0:0:64,0:2243,0:-202.105,-19.2659,0,-202.105,-19.2659,-202.105	1/1:56:0,56,0:0:0:56,0:1987,0:-179.045,-16.8577,0,-179.045,-16.8577,-179.045	1/1:26:0,26,0:0:0:26,0:907,0:-81.9435,-7.82678,0,-81.9435,-7.82678,-81.9435	1/2:59:0,31,28:0:0:31,28:1079,974:-163.937,-76.1925,-66.8605,-88.0858,0,-79.6569	1/2:52:0,24,28:0:0:24,28:844,986:-144.266,-75.5541,-68.3294,-69.0542,0,-60.6254	1/1:22:0,22,0:0:0:22,0:768,0:-69.4349,-6.62266,0,-69.4349,-6.62266,-69.4349	1/2:27:0,18,9:0:0:18,9:640,322:-76.7967,-24.6266,-19.208,-52.5108,0,-49.8015	1/2:29:0,12,16:0:0:12,16:423,549:-72.9044,-38.4507,-34.8383,-34.5114,0,-29.695	1/2:115:0,53,60:0:0:53,60:1871,2078:-314.188,-161.818,-145.864,-152.355,0,-134.293	1/2:58:0,26,31:0:0:26,31:919,1082:-157.374,-82.5186,-74.6918,-74.9592,0,-65.6273	1/2:123:0,41,82:0:0:41,82:1415,2843:-340.577,-225.621,-213.279,-115.298,0,-90.614	1/2:103:0,43,60:0:0:43,60:1505,2118:-286.355,-163.904,-150.96,-122.796,0,-104.734	1/1:19:0,18,1:0:0:18,1:644,36:-57.9445,-5.41854,0,-55.1371,-2.26508,-54.8361	1/1:53:0,53,0:0:0:53,0:1865,0:-167.995,-15.9546,0,-167.995,-15.9546,-167.995	1/2:170:0,88,82:0:0:88,82:3098,2910:-482.769,-230.56,-204.069,-252.557,0,-227.873	1/2:216:0,115,99:0:0:115,99:4044,3487:-595.259,-266.085,-231.467,-329.207,0,-299.405	1/1:26:0,26,0:0:0:26,0:910,0:-82.2141,-7.82678,0,-82.2141,-7.82678,-82.2141	1/2:157:1,73,81:1:29:73,81:2600,2870:-433.988,-222.363,-202.696,-209.712,0,-187.637	1/2:70:0,35,35:0:0:35,35:1243,1245:-195.616,-94.5481,-84.0121,-101.411,0,-90.8748	1/1:66:0,66,0:0:0:66,0:2330,0:-209.957,-19.868,0,-209.957,-19.868,-209.957	1/2:5:0,3,2:0:0:3,2:108,72:-14.399,-5.56564,-4.66255,-9.17208,0,-8.57002	2/2:7:0,0,7:0:0:0,7:0,236:-19.1812,-19.1812,-19.1812,-2.10721,-2.10721,0	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:3:0,3,0:0:0:3,0:99,0:-9.23564,-0.90309,0,-9.23564,-0.90309,-9.23564	1/2:8:0,2,6:0:0:2,6:68,201:-20.127,-14.6018,-13.9997,-5.85469,0,-4.04851	1/1:189:0,189,0:0:0:189,0:6688,0:-602.003,-56.8947,0,-602.003,-56.8947,-602.003	1/1:91:0,89,0:0:0:89,0:3118,0:-280.47,-26.7917,0,-280.47,-26.7917,-280.47	1/2:39:0,13,25:0:0:13,25:456,875:-101.234,-64.1133,-60.2,-37.1807,0,-29.655	.:.:.:.:.:.:.:.	1/2:97:0,52,45:0:0:52,45:1832,1595:-270.336,-121.188,-105.534,-149.489,0,-135.943	1/1:22:0,22,0:0:0:22,0:766,0:-69.2585,-6.62266,0,-69.2585,-6.62266,-69.2585	1/2:93:0,48,45:0:0:48,45:1701,1562:-259.934,-121.368,-106.918,-138.909,0,-125.363	1/2:35:0,19,16:0:0:19,16:661,544:-96.8345,-43.0807,-37.3611,-54.092,0,-49.2756	1/1:51:0,51,0:0:0:51,0:1803,0:-162.537,-15.3525,0,-162.537,-15.3525,-162.537	1/2:120:0,54,66:0:0:54,66:1907,2338:-340.38,-185.078,-168.823,-155.651,0,-135.783	1/2:87:0,50,36:0:0:50,36:1750,1282:-237.585,-95.1975,-80.146,-142.365,0,-131.528	1/2:85:0,44,41:0:0:44,41:1560,1440:-238.301,-111.426,-98.1803,-127.219,0,-114.877	1/1:79:0,79,0:0:0:79,0:2774,0:-249.859,-23.7814,0,-249.859,-23.7814,-249.859	1/1:28:0,28,0:0:0:28,0:977,0:-88.2405,-8.42884,0,-88.2405,-8.42884,-88.2405	1/1:36:0,35,1:0:0:35,1:1228,36:-110.481,-10.5361,0,-107.701,-7.41348,-107.4	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:92:0,47,45:0:0:47,45:1680,1549:-253.286,-116.286,-102.138,-137.338,0,-123.791	1/2:48:0,27,21:0:0:27,21:964,743:-136.801,-58.1995,-50.0717,-78.949,0,-72.6274	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:50:0,50,0:0:0:50,0:1772,0:-159.761,-15.0515,0,-159.761,-15.0515,-159.761	1/1:43:0,43,0:0:0:43,0:1531,0:-138.08,-12.9443,0,-138.08,-12.9443,-138.08	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:35:0,15,20:0:0:15,20:532,693:-96.7372,-53.3828,-48.8674,-43.6976,0,-37.677	1/1:68:0,68,0:0:0:68,0:2402,0:-215.946,-20.47,0,-215.946,-20.47,-215.946	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:109:0,51,57:0:0:51,57:1808,1988:-304.688,-157.387,-142.034,-147.289,0,-130.131	1/1:98:0,98,0:0:0:98,0:3467,0:-312.242,-29.5009,0,-312.242,-29.5009,-312.242	1/2:37:0,26,11:0:0:26,11:932,394:-105.666,-29.6318,-21.805,-76.3721,0,-73.0607	1/1:38:0,38,0:0:0:38,0:1310,0:-118.191,-11.4391,0,-118.191,-11.4391,-118.191	1/2:123:0,55,68:0:0:55,68:1923,2302:-334.569,-178.39,-161.833,-156.517,0,-136.046	1/2:108:0,25,83:0:0:25,83:900,2943:-303.18,-229.74,-222.214,-73.7953,0,-48.8098	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:48:1,47,0:1:35:47,0:1608,0:-141.506,-10.9508,0,-141.807,-14.1484,-144.655	1/1:48:0,48,0:0:0:48,0:1679,0:-151.396,-14.4494,0,-151.396,-14.4494,-151.396	1/2:17:0,9,8:0:0:9,8:320,286:-48.4218,-22.3354,-19.6261,-26.4331,0,-24.0248	1/1:150:0,148,0:0:0:148,0:5215,0:-469.184,-44.5524,0,-469.184,-44.5524,-469.184	1/2:64:0,31,33:0:0:31,33:1088,1148:-173.151,-84.7796,-75.4477,-88.7055,0,-78.7715	1/1:92:0,91,0:0:0:91,0:3185,0:-286.598,-27.3937,0,-286.598,-27.3937,-286.598	1/1:62:0,62,0:0:0:62,0:2175,0:-196.012,-18.6639,0,-196.012,-18.6639,-196.012	1/2:82:0,20,62:0:0:20,62:708,2204:-221.092,-163.415,-157.395,-58.0237,0,-39.3599	1/2:31:0,14,17:0:0:14,17:473,584:-81.4766,-43.1265,-38.9121,-38.6768,0,-33.5593	.:.:.:.:.:.:.:.	1/1:62:0,62,0:0:0:62,0:2181,0:-196.531,-18.6639,0,-196.531,-18.6639,-196.531	1/1:57:0,57,0:0:0:57,0:2032,0:-183.139,-17.1587,0,-183.139,-17.1587,-183.139	1/1:103:1,101,0:1:25:101,0:3570,0:-319.104,-28.6772,0,-319.405,-30.404,-321.194	1/1:68:0,68,0:0:0:68,0:2400,0:-216.257,-20.47,0,-216.257,-20.47,-216.257	1/1:60:0,60,0:0:0:60,0:2101,0:-189.356,-18.0618,0,-189.356,-18.0618,-189.356	1/2:30:0,13,17:0:0:13,17:460,608:-85.2759,-47.8033,-43.8899,-37.822,0,-32.7045	1/1:101:0,98,0:0:0:98,0:3459,0:-311.24,-29.5009,0,-311.24,-29.5009,-311.24	1/2:27:0,13,14:0:0:13,14:456,485:-73.113,-35.9939,-32.0805,-37.4533,0,-33.2389	1/2:61:0,35,26:0:0:35,26:1223,893:-165.897,-66.3917,-55.8556,-99.8352,0,-92.0084	1/1:47:0,45,1:0:0:45,1:1596,36:-143.57,-13.5464,0,-140.641,-10.6175,-140.34	1/1:20:0,20,0:0:0:20,0:708,0:-64.0456,-6.0206,0,-64.0456,-6.0206,-64.0456	1/2:64:0,30,34:0:0:30,34:1076,1184:-178.27,-90.4926,-81.4617,-88.122,0,-77.8869	1/2:60:0,20,40:0:0:20,40:716,1422:-168.253,-109.857,-103.836,-58.7471,0,-46.7059	1/1:85:0,85,0:0:0:85,0:3024,0:-272.39,-25.5876,0,-272.39,-25.5876,-272.39	1/1:67:0,65,0:0:0:65,0:2299,0:-206.847,-19.567,0,-206.847,-19.567,-206.847
chr04	9362440	.	TCTA	CCTA,CCTT	133036	PASS	AB=0.5,0.497114;ABP=3.0103,3.21084;AC=152,36;AF=0.808511,0.191489;AN=188;AO=4773,1387;CIGAR=1X3M,1X2M1X;DP=6186;DPB=6186.5;DPRA=33.2473,1.54366;EPP=10272.1,3014.84;EPPR=5.18177;GTI=3;LEN=1,4;MEANALT=1.67742,2.225;MQM=59.6185,57.6929;MQMR=60;NS=94;NUMALT=2;ODDS=0.865442;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=170195,48957;QR=35;RO=1;RPL=4762,1387;RPP=10272.1,3014.84;RPPR=5.18177;RPR=11,0;RUN=1,1;SAF=0,0;SAP=10367.4,3014.84;SAR=4773,1387;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:47:0,23,24:0:0:23,24:818,830:-134.409,-67.7412,-60.8175,-67.0185,0,-59.7938	1/1:132:0,131,0:0:0:131,0:4681,0:-420.894,-39.4349,0,-420.894,-39.4349,-420.894	1/1:220:0,216,2:0:0:216,2:7684,65:-690.986,-65.0225,0,-685.743,-59.7532,-685.141	1/1:22:0,20,0:0:0:20,0:720,0:-64.7746,-6.0206,0,-64.7746,-6.0206,-64.7746	1/1:40:0,40,0:0:0:40,0:1432,0:-128.901,-12.0412,0,-128.901,-12.0412,-128.901	1/2:69:0,39,30:0:0:39,30:1377,1070:-199.673,-87.5703,-75.8301,-112.458,0,-103.427	1/1:87:0,87,0:0:0:87,0:3099,0:-278.818,-26.1896,0,-278.818,-26.1896,-278.818	1/1:54:0,54,0:0:0:54,0:1932,0:-174.146,-16.2556,0,-174.146,-16.2556,-174.146	1/1:56:0,56,0:0:0:56,0:1994,0:-179.676,-16.8577,0,-179.676,-16.8577,-179.676	1/1:38:0,38,0:0:0:38,0:1349,0:-121.705,-11.4391,0,-121.705,-11.4391,-121.705	1/1:60:0,60,0:0:0:60,0:2141,0:-192.68,-18.0618,0,-192.68,-18.0618,-192.68	1/2:45:0,25,20:0:0:25,20:888,694:-129.11,-56.7474,-49.2217,-72.7133,0,-66.6927	1/1:14:0,13,0:0:0:13,0:464,0:-41.8121,-3.91339,0,-41.8121,-3.91339,-41.8121	1/2:68:0,29,39:0:0:29,39:1036,1386:-197.691,-113.23,-104.5,-84.8171,0,-73.0769	1/1:27:0,27,0:0:0:27,0:945,0:-85.3622,-8.12781,0,-85.3622,-8.12781,-85.3622	1/1:35:0,35,0:0:0:35,0:1256,0:-113.317,-10.5361,0,-113.317,-10.5361,-113.317	1/2:26:0,8,18:0:0:8,18:284,624:-73.5701,-50.4261,-48.0178,-23.4951,0,-18.0766	1/2:23:0,18,5:0:0:18,5:648,180:-67.8754,-15.0469,-9.62837,-53.1883,0,-51.6831	1/2:151:0,73,78:0:0:73,78:2595,2758:-436.247,-224.813,-202.838,-211.788,0,-188.307	1/2:78:0,40,38:0:0:40,38:1440,1334:-226.294,-108.792,-96.751,-117.857,0,-106.417	1/2:108:0,39,69:0:0:39,69:1368,2425:-308.625,-197.625,-185.885,-111.35,0,-90.5791	1/1:79:0,78,0:0:0:78,0:2789,0:-250.817,-23.4803,0,-250.817,-23.4803,-250.817	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/2:148:0,83,64:0:0:83,64:2964,2241:-423.5,-181.846,-156.861,-241.651,0,-222.385	1/1:159:0,159,0:0:0:159,0:5680,0:-511.289,-47.8638,0,-511.289,-47.8638,-511.289	1/1:28:0,28,0:0:0:28,0:996,0:-89.9549,-8.42884,0,-89.9549,-8.42884,-89.9549	1/2:292:0,156,136:0:0:156,136:5585,4785:-844.466,-389.172,-342.211,-455.648,0,-414.708	1/1:72:0,71,1:0:0:71,1:2535,36:-227.934,-21.3731,0,-224.996,-18.0759,-224.695	1/1:80:0,80,0:0:0:80,0:2857,0:-257.366,-24.0824,0,-257.366,-24.0824,-257.366	1/1:6:0,6,0:0:0:6,0:212,0:-19.396,-1.80618,0,-19.396,-1.80618,-19.396	1/1:17:0,16,0:0:0:16,0:576,0:-51.8152,-4.81648,0,-51.8152,-4.81648,-51.8152	1/2:8:0,3,5:0:0:3,5:108,180:-23.8582,-15.046,-14.1429,-9.17208,0,-7.66693	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/2:142:0,77,64:0:0:77,64:2744,2280:-408.411,-184.751,-161.572,-223.655,0,-204.389	1/1:83:0,82,1:0:0:82,1:2936,36:-263.887,-24.6845,0,-260.954,-21.3923,-260.653	1/2:27:0,9,18:0:0:9,18:308,639:-77.3975,-52.4012,-49.6919,-25.3426,0,-19.924	2/2:2:0,0,2:0:0:0,2:0,65:-6.17303,-6.17303,-6.17303,-0.60206,-0.60206,0	1/2:138:0,73,65:0:0:73,65:2602,2273:-396.542,-184.475,-162.5,-212.419,0,-192.852	1/1:8:0,8,0:0:0:8,0:284,0:-25.8987,-2.40824,0,-25.8987,-2.40824,-25.8987	1/1:114:0,114,0:0:0:114,0:4071,0:-366.577,-34.3174,0,-366.577,-34.3174,-366.577	1/1:52:0,52,0:0:0:52,0:1838,0:-165.457,-15.6536,0,-165.457,-15.6536,-165.457	1/1:48:0,48,0:0:0:48,0:1728,0:-155.805,-14.4494,0,-155.805,-14.4494,-155.805	1/1:78:1,77,0:1:35:77,0:2713,0:-240.904,-19.9817,0,-241.205,-23.1793,-244.053	1/1:80:0,80,0:0:0:80,0:2833,0:-255.204,-24.0824,0,-255.204,-24.0824,-255.204	1/2:128:0,64,63:0:0:64,63:2296,2212:-366.924,-179.647,-160.381,-187.272,0,-168.307	1/2:67:0,27,39:0:0:27,39:968,1395:-192.551,-113.6,-105.472,-78.9494,0,-67.2092	1/2:119:0,62,57:0:0:62,57:2205,2006:-342.66,-162.992,-144.328,-180.021,0,-162.862	1/2:74:0,43,31:0:0:43,31:1540,1079:-213.559,-87.9624,-75.0182,-125.948,0,-116.616	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:84:0,83,1:0:0:83,1:2988,36:-268.633,-24.9855,0,-265.695,-21.6882,-265.394	1/1:50:0,50,0:0:0:50,0:1771,0:-159.592,-15.0515,0,-159.592,-15.0515,-159.592	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:112:0,111,0:0:0:111,0:3980,0:-357.935,-33.4143,0,-357.935,-33.4143,-357.935	1/1:24:0,22,0:0:0:22,0:788,0:-70.885,-6.62266,0,-70.885,-6.62266,-70.885	1/2:11:0,8,3:0:0:8,3:288,97:-31.6716,-8.14603,-5.73779,-23.8588,0,-22.9557	1/1:4:0,4,0:0:0:4,0:144,0:-13.3073,-1.20412,0,-13.3073,-1.20412,-13.3073	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/1:54:0,54,0:0:0:54,0:1940,0:-174.861,-16.2556,0,-174.861,-16.2556,-174.861	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:190:0,189,0:0:0:189,0:6763,0:-607.583,-56.8947,0,-607.583,-56.8947,-607.583	1/2:113:0,59,52:0:0:59,52:2088,1850:-320.493,-150.426,-132.665,-170.166,0,-154.513	1/1:39:0,39,0:0:0:39,0:1396,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/1:94:0,94,0:0:0:94,0:3363,0:-302.885,-28.2968,0,-302.885,-28.2968,-302.885	1/1:117:0,116,0:0:0:116,0:4156,0:-373.948,-34.9195,0,-373.948,-34.9195,-373.948	1/1:67:0,65,2:0:0:65,2:2324,72:-209.04,-19.567,0,-203.166,-13.3331,-202.563	1/1:23:0,23,0:0:0:23,0:824,0:-74.4549,-6.92369,0,-74.4549,-6.92369,-74.4549	1/1:28:0,27,0:0:0:27,0:972,0:-87.427,-8.12781,0,-87.427,-8.12781,-87.427	1/1:24:0,24,0:0:0:24,0:820,0:-74.0045,-7.22472,0,-74.0045,-7.22472,-74.0045	1/1:3:0,3,0:0:0:3,0:108,0:-10.0748,-0.90309,0,-10.0748,-0.90309,-10.0748	1/2:64:0,27,37:0:0:27,37:972,1301:-184.946,-105.676,-97.5485,-79.6251,0,-68.487	1/2:50:0,33,17:0:0:33,17:1180,609:-146.241,-50.0251,-40.0911,-96.5737,0,-91.4562	1/2:66:0,26,40:0:0:26,40:932,1429:-192.611,-116.596,-108.77,-76.3721,0,-64.3309	1/1:169:0,167,0:0:0:167,0:5978,0:-537.452,-50.272,0,-537.452,-50.272,-537.452	1/2:77:0,42,34:0:0:42,34:1465,1210:-217.472,-98.4136,-85.7703,-119.055,0,-108.82	1/1:80:0,79,0:0:0:79,0:2809,0:-252.599,-23.7814,0,-252.599,-23.7814,-252.599	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:80:0,44,35:0:0:44,35:1568,1237:-228.623,-100.81,-87.5645,-127.916,0,-117.38	1/2:112:0,53,59:0:0:53,59:1873,2090:-320.355,-167.814,-151.859,-152.893,0,-135.132	1/2:140:0,83,57:0:0:83,57:2954,2026:-405.925,-165.174,-140.188,-241.107,0,-223.948	1/2:41:0,15,26:0:0:15,26:538,933:-118.639,-75.0254,-70.51,-43.9685,0,-36.1417	1/2:41:0,19,22:0:0:19,22:669,784:-118.395,-64.2082,-58.4886,-54.5401,0,-47.9175	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6759,-8.42884,0,-90.6759,-8.42884,-90.6759	1/2:83:0,34,49:0:0:34,49:1211,1730:-239.613,-140.914,-130.679,-99.0534,0,-84.3029	1/2:20:0,11,9:0:0:11,9:388,313:-57.2811,-25.6875,-22.3762,-31.9427,0,-29.2335	1/1:52:0,52,0:0:0:52,0:1843,0:-166.15,-15.6536,0,-166.15,-15.6536,-166.15	1/1:59:0,59,0:0:0:59,0:2087,0:-187.816,-17.7608,0,-187.816,-17.7608,-187.816	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:52:0,23,29:0:0:23,29:828,1036:-151.716,-84.1527,-77.229,-67.9204,0,-59.1906	1/2:64:0,18,46:0:0:18,46:632,1611:-182.613,-131.175,-125.757,-51.7882,0,-37.9408	1/1:177:0,177,0:0:0:177,0:6256,0:-560.953,-53.2823,0,-560.953,-53.2823,-560.953	1/1:82:0,82,0:0:0:82,0:2928,0:-263.513,-24.6845,0,-263.513,-24.6845,-263.513
chr04	9531532	.	A	G	105114	PASS	AB=0.499684;ABP=3.01304;AC=141;AF=0.758065;AN=186;AO=5005;CIGAR=1X;DP=6608;DPB=6608;DPRA=0;EPP=10862.5;EPPR=3473.02;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9497;MQMR=59.9944;NS=93;NUMALT=1;ODDS=2.06102;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178398;QR=57191;RO=1598;RPL=5005;RPP=10871.2;RPPR=3473.02;RPR=0;RUN=1;SAF=1;SAP=10862.5;SAR=5004;SRF=0;SRP=3473.02;SRR=1598;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:23,18:23:828:18:644:-45.9484,0,-62.5019	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:125:0,125:0:0:125:4463:-401.841,-37.6288,0	1/1:146:1,145:1:36:145:5171:-461.934,-40.3521,0	1/1:54:1,53:1:36:53:1878:-165.699,-12.6573,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:49:24,25:24:864:25:892:-65.8492,0,-63.3321	1/1:134:3,130:3:108:130:4634:-407.141,-30.3216,0	0/1:93:56,37:56:2012:37:1328:-91.8264,0,-153.357	1/1:67:0,67:0:0:67:2388:-215.178,-20.169,0	1/1:66:0,66:0:0:66:2334:-210.233,-19.868,0	1/1:96:0,96:0:0:96:3427:-308.644,-28.8989,0	1/1:57:0,57:0:0:57:2023:-182.337,-17.1587,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	0/1:63:30,33:30:1080:33:1172:-86.8226,0,-78.5484	0/1:54:33,21:33:1179:21:752:-51.7506,0,-90.1616	1/1:38:1,37:1:36:37:1328:-116.224,-7.84087,0	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:35:15,20:15:536:20:703:-53.0575,0,-38.0388	0/1:109:59,50:59:2074:50:1796:-129.11,0,-154.115	0/1:106:51,55:51:1805:55:1963:-145.035,0,-130.821	0/1:79:52,27:52:1853:27:964:-63.2955,0,-143.267	0/1:112:44,68:44:1584:68:2409:-182.723,0,-109.136	1/1:49:4,44:4:144:44:1572:-128.483,-1.37578,0	1/1:51:0,51:0:0:51:1813:-163.451,-15.3525,0	0/1:137:79,58:79:2806:58:2072:-145.51,0,-211.536	0/1:125:65,60:65:2332:60:2152:-156.318,0,-172.511	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:248:116,132:116:4160:132:4724:-350.664,0,-299.927	0/1:64:31,33:31:1112:33:1184:-87.6024,0,-81.1254	1/1:69:0,69:0:0:69:2456:-221.295,-20.7711,0	0/1:8:3,5:3:108:5:167:-12.9493,0,-7.66693	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:180:0,179:0:0:179:6385:-574.15,-53.8844,0	1/1:141:2,139:2:72:139:4963:-439.983,-35.6085,0	0/1:46:18,28:18:644:28:1008:-77.189,0,-44.4432	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:77:37,40:37:1328:40:1431:-105.908,0,-96.6429	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:118:49,69:49:1756:69:2476:-187.572,0,-122.802	0/1:60:28,32:28:996:32:1139:-84.7566,0,-71.8931	1/1:54:0,54:0:0:54:1924:-173.436,-16.2556,0	0/1:70:29,41:29:1036:41:1468:-111.344,0,-72.4818	0/1:93:56,37:56:1993:37:1320:-91.1062,0,-151.646	0/1:175:85,90:85:3044:90:3216:-236.98,0,-221.507	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:99:0,99:0:0:99:3500:-315.21,-29.802,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	1/1:6:0,6:0:0:6:201:-18.3452,-1.80618,0	0/1:72:38,34:38:1364:34:1208:-87.3519,0,-101.387	0/1:45:19,26:19:684:26:932:-70.6525,0,-48.344	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:119:0,119:0:0:119:4238:-381.599,-35.8226,0	1/1:44:0,44:0:0:44:1558:-140.51,-13.2453,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/1:65:32,33:32:1137:33:1168:-85.8603,0,-83.07	1/1:68:0,67:0:0:67:2408:-216.616,-20.169,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:135:66,69:66:2376:69:2472:-182.095,0,-173.458	1/1:117:0,116:0:0:116:4140:-372.423,-34.9195,0	0/1:48:22,26:22:788:26:928:-69.3888,0,-56.7954	1/1:77:0,77:0:0:77:2717:-244.528,-23.1793,0	0/1:104:44,60:44:1576:60:2132:-160.841,0,-110.824	0/1:99:63,36:63:2249:36:1283:-85.9707,0,-172.869	1/1:33:0,33:0:0:33:1166:-105.246,-9.93399,0	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	0/1:17:9,8:9:324:8:288:-21.1495,0,-24.3883	1/1:108:0,108:0:0:108:3832:-345.077,-32.5112,0	0/1:56:20,36:20:716:36:1284:-99.0057,0,-47.91	1/1:140:0,140:0:0:140:5012:-451.227,-42.1442,0	1/1:96:0,96:0:0:96:3436:-309.451,-28.8989,0	0/1:103:58,45:58:2084:45:1608:-114.004,0,-156.824	0/1:90:38,52:38:1368:52:1855:-140.136,0,-96.3248	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:111:0,111:0:0:111:3960:-356.589,-33.4143,0	1/1:134:1,133:1:36:133:4763:-425.226,-36.7397,0	1/1:45:0,45:0:0:45:1592:-143.568,-13.5464,0	1/1:62:0,62:0:0:62:2211:-199.254,-18.6639,0	0/1:32:16,16:16:576:16:563:-41.3662,0,-42.542	1/1:110:0,110:0:0:110:3848:-346.506,-33.1133,0	0/1:23:13,10:13:459:10:356:-25.4576,0,-34.7204	0/1:70:36,34:36:1296:34:1212:-88.3142,0,-95.8718	1/1:60:0,60:0:0:60:2139:-192.777,-18.0618,0	1/1:32:0,32:0:0:32:1132:-102.189,-9.63296,0	0/1:101:49,52:49:1756:52:1851:-136.465,0,-127.92	0/1:68:42,26:42:1512:26:920:-62.6331,0,-115.905	1/1:114:1,113:1:36:113:4007:-357.224,-30.7191,0	1/1:89:0,89:0:0:89:3167:-285.255,-26.7917,0
chr04	9540277	.	AGCCT	TGCCT,TGCCC	155536	PASS	AB=0.441482,0.548976;ABP=108.987,77.242;AC=142,46;AF=0.755319,0.244681;AN=188;AO=5314,1974;CIGAR=1X4M,1X3M1X;DP=7347;DPB=7347;DPRA=19.7392,1.22114;EPP=11533.5,4289.5;EPPR=7.35324;GTI=2;LEN=1,5;MEANALT=2.11828,2.56364;MQM=58.9287,51.694;MQMR=60;NS=94;NUMALT=2;ODDS=1.10977;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=190002,69320;QR=53;RO=2;RPL=1,0;RPP=11533.5,4289.5;RPPR=7.35324;RPR=5313,1974;RUN=1,1;SAF=5314,1974;SAP=11542.2,4289.5;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:61:0,24,37:0:0:24,37:852,1276:-172.869,-103.605,-96.38,-69.6146,0,-58.4764	1/1:64:0,64,0:0:0:64,0:2285,0:-205.691,-19.2659,0,-205.691,-19.2659,-205.691	1/1:112:0,112,0:0:0:112,0:4002,0:-359.995,-33.7154,0,-359.995,-33.7154,-359.995	1/1:185:0,182,1:0:0:182,1:6475,31:-582.061,-54.7875,0,-579.575,-52.2893,-579.274	1/1:37:0,37,0:0:0:37,0:1332,0:-120.09,-11.1381,0,-120.09,-11.1381,-120.09	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/2:124:0,58,66:0:0:58,66:2076,2325:-358.085,-188.814,-171.354,-169.625,0,-149.757	1/1:112:0,111,0:0:0:111,0:3987,0:-358.05,-33.4143,0,-358.05,-33.4143,-358.05	1/2:84:0,46,38:0:0:46,38:1644,1311:-239.829,-106.286,-92.4388,-133.892,0,-122.453	1/1:48:0,48,0:0:0:48,0:1720,0:-155.064,-14.4494,0,-155.064,-14.4494,-155.064	1/1:82:0,82,0:0:0:82,0:2935,0:-264.063,-24.6845,0,-264.063,-24.6845,-264.063	1/1:107:0,106,1:0:0:106,1:3786,36:-339.795,-31.9092,0,-336.903,-28.6617,-336.602	1/1:106:0,106,0:0:0:106,0:3784,0:-340.545,-31.9092,0,-340.545,-31.9092,-340.545	1/1:85:0,84,0:0:0:84,0:2994,0:-269.256,-25.2865,0,-269.256,-25.2865,-269.256	1/2:78:0,36,42:0:0:36,42:1288,1484:-225.865,-120.87,-110.033,-105.35,0,-92.7071	1/2:69:0,31,37:0:0:31,37:1112,1317:-197.53,-106.869,-97.5366,-90.706,0,-79.5679	1/1:61:0,61,0:0:0:61,0:2188,0:-197.081,-18.3628,0,-197.081,-18.3628,-197.081	1/2:33:0,15,18:0:0:15,18:540,626:-95.0997,-51.0323,-46.5168,-44.4211,0,-39.0025	1/2:35:0,19,16:0:0:19,16:680,564:-101.418,-46.0529,-40.3333,-55.7191,0,-50.9027	1/2:158:0,66,90:0:0:66,90:2368,3174:-449.759,-256.653,-236.785,-193.11,0,-166.017	1/2:144:0,53,89:0:0:53,89:1885,3155:-409.164,-255.909,-239.954,-153.273,0,-126.481	1/2:50:0,15,35:0:0:15,35:540,1235:-144.643,-100.632,-96.1166,-44.368,0,-33.8319	1/2:132:1,77,54:1:31:77,54:2756,1906:-375.949,-151.845,-131.153,-221.96,0,-208.193	1/1:43:0,40,3:0:0:40,3:1423,97:-127.956,-12.0412,0,-120.143,-3.90353,-119.24	1/1:83:0,82,1:0:0:82,1:2944,36:-264.731,-24.6845,0,-261.8,-21.3941,-261.499	1/2:162:0,70,91:0:0:70,91:2504,3178:-460.271,-256.405,-235.333,-203.86,0,-176.466	1/2:202:0,80,115:0:0:80,115:2844,4014:-556.298,-324.993,-300.911,-231.308,0,-196.69	1/1:34:0,34,0:0:0:34,0:1224,0:-110.412,-10.235,0,-110.412,-10.235,-110.412	1/2:170:0,66,101:0:0:66,101:2347,3553:-478.781,-287.686,-267.818,-191.096,0,-160.692	1/2:103:0,38,65:0:0:38,65:1351,2289:-295.322,-185.313,-173.874,-110.362,0,-90.7948	1/1:133:0,130,0:0:0:130,0:4611,0:-413.828,-39.1339,0,-413.828,-39.1339,-413.828	2/2:4:0,0,4:0:0:0,4:0,142:-13.1062,-13.1062,-13.1062,-1.20412,-1.20412,0	1/2:2:0,1,1:0:0:1,1:36,36:-6.22815,-3.29039,-2.98936,-3.29724,0,-2.99621	1/1:7:0,7,0:0:0:7,0:248,0:-22.3325,-2.10721,0,-22.3325,-2.10721,-22.3325	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:4:0,3,1:0:0:3,1:104,33:-11.4614,-2.99554,-2.09245,-8.79971,0,-8.49868	1/1:209:0,207,1:0:0:207,1:7409,36:-666.165,-62.3132,0,-663.235,-59.3844,-662.934	1/1:102:0,100,1:0:0:100,1:3579,36:-321.851,-30.103,0,-318.958,-27.2113,-318.657	1/2:62:1,24,37:1:22:24,37:864,1310:-174.75,-104.683,-99.134,-68.8255,0,-59.3607	1/2:7:0,3,4:0:0:3,4:108,143:-20.8069,-11.9933,-11.0902,-9.17208,0,-7.96796	1/2:74:0,35,38:0:0:35,38:1253,1343:-209.715,-108.065,-97.5292,-101.667,0,-90.2275	1/1:34:0,34,0:0:0:34,0:1219,0:-109.717,-10.235,0,-109.717,-10.235,-109.717	1/2:109:0,54,55:0:0:54,55:1919,1946:-313.724,-157.618,-141.362,-156.459,0,-139.902	1/2:72:0,36,35:0:0:36,35:1287,1236:-204.754,-100.049,-89.2121,-104.701,0,-94.1651	1/1:50:0,48,2:0:0:48,2:1719,60:-154.371,-14.4494,0,-149.596,-9.37297,-148.994	1/2:106:0,57,49:0:0:57,49:2036,1733:-306.955,-140.964,-123.806,-166.345,0,-151.595	1/2:93:0,48,42:0:0:48,42:1724,1488:-261.191,-120.721,-106.272,-140.499,0,-127.856	1/2:92:0,39,50:0:0:39,50:1392,1741:-254.061,-140.679,-128.938,-113.43,0,-98.3784	1/1:72:0,71,0:0:0:71,0:2542,0:-228.376,-21.3731,0,-228.376,-21.3731,-228.376	1/1:72:0,72,0:0:0:72,0:2584,0:-232.791,-21.6742,0,-232.791,-21.6742,-232.791	1/1:66:0,66,0:0:0:66,0:2361,0:-212.477,-19.868,0,-212.477,-19.868,-212.477	1/1:3:0,3,0:0:0:3,0:108,0:-10.057,-0.90309,0,-10.057,-0.90309,-10.057	1/2:102:0,35,66:0:0:35,66:1255,2328:-290.837,-188.971,-178.435,-101.875,0,-82.007	1/2:56:0,29,27:0:0:29,27:1031,955:-161.589,-77.5774,-68.8475,-84.3653,0,-76.2374	1/1:6:0,6,0:0:0:6,0:216,0:-19.7896,-1.80618,0,-19.7896,-1.80618,-19.7896	1/1:118:0,117,0:0:0:117,0:4165,0:-374.398,-35.2205,0,-374.398,-35.2205,-374.398	1/1:49:0,48,1:0:0:48,1:1707,36:-153.446,-1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chr04	9540325	.	G	A	31805.4	PASS	AB=0.546866;ABP=68.1418;AC=45;AF=0.239362;AN=188;AO=1879;CIGAR=1X;DP=7125;DPB=7125;DPRA=1.07413;EPP=4083.21;EPPR=11390.2;GTI=2;LEN=1;MEANALT=1;MQM=51.7914;MQMR=59.0017;NS=94;NUMALT=1;ODDS=0.822482;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66846;QR=185575;RO=5244;RPL=1879;RPP=4083.21;RPPR=11286.2;RPR=0;RUN=1;SAF=1879;SAP=4083.21;SAR=0;SRF=5232;SRP=11286.2;SRR=12;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:21,36:21:748:36:1275:-97.3723,0,-50.4373	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.325	0/0:108:107,0:107:3740:0:0:0,-32.2102,-336.192	0/0:190:190,0:190:6694:0:0:0,-57.1957,-602.243	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.676	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/1:119:56,63:56:1992:63:2240:-165.048,0,-143.706	0/0:108:108,0:108:3828:0:0:0,-32.5112,-344.611	0/1:74:43,31:43:1531:31:1099:-76.7488,0,-115.634	0/0:49:49,0:49:1718:0:0:0,-14.7505,-154.882	0/0:82:82,0:82:2915:0:0:0,-24.6845,-262.265	0/0:101:101,0:101:3562:0:0:0,-30.404,-320.107	0/0:106:106,0:106:3752:0:0:0,-31.9092,-337.741	0/0:87:87,0:87:3070:0:0:0,-26.1896,-276.449	0/1:76:36,40:36:1273:40:1424:-105.269,0,-91.9565	0/1:70:33,37:33:1172:37:1320:-97.5107,0,-84.6617	0/0:59:59,0:59:2072:0:0:0,-17.7608,-186.689	0/1:33:16,17:16:568:17:608:-44.9702,0,-41.5097	0/1:36:20,16:20:716:16:576:-40.9943,0,-53.8315	0/1:152:66,86:66:2347:86:3055:-228.089,0,-165.673	0/1:137:53,84:53:1857:84:3000:-227.46,0,-125.577	0/1:45:12,33:12:432:33:1175:-92.2479,0,-25.6584	0/1:125:75,50:75:2663:50:1796:-123.295,0,-202.104	0/0:43:40,3:40:1415:3:108:0,-2.88831,-117.505	0/0:81:80,1:80:2824:1:36:0,-20.792,-250.704	0/1:158:71,87:71:2530:87:3081:-228.143,0,-180.053	0/1:194:84,110:84:2995:110:3896:-290.625,0,-210.588	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.002	0/1:166:66,100:66:2317:100:3557:-268.471,0,-158.533	0/1:100:38,62:38:1339:62:2212:-167.993,0,-90.7016	0/0:128:128,0:128:4559:0:0:0,-38.5318,-408.756	1/1:4:0,4:0:0:4:144:-13.2883,-1.20412,0	0/1:2:1,1:1:32:1:36:-2.98936,0,-2.59725	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.1031	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:4:3,1:3:108:1:36:-2.38905,0,-8.87105	0/0:204:204,0:204:7240:0:0:0,-61.4101,-651.506	0/0:97:97,0:97:3421:0:0:0,-29.1999,-307.903	0/1:59:25,34:25:892:34:1212:-91.2127,0,-62.6419	0/1:7:3,4:3:108:4:144:-11.1811,0,-7.96796	0/1:71:35,36:35:1235:36:1280:-93.0096,0,-90.007	0/0:30:30,0:30:1076:0:0:0,-9.0309,-96.8169	0/1:106:53,53:53:1826:53:1865:-134.455,0,-132.598	0/1:72:37,35:37:1307:35:1256:-90.9463,0,-96.0048	0/0:48:48,0:48:1675:0:0:0,-14.4494,-150.973	0/1:105:58,47:58:2038:47:1680:-119.298,0,-152.08	0/1:89:49,40:49:1737:40:1432:-101.957,0,-129.658	0/1:91:41,50:41:1446:50:1784:-132.408,0,-102.725	0/0:69:69,0:69:2441:0:0:0,-20.7711,-219.902	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.902	0/0:66:66,0:66:2319:0:0:0,-19.868,-208.966	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.057	0/1:95:32,63:32:1136:63:2235:-172.174,0,-73.4329	0/1:53:27,26:27:944:26:908:-65.5256,0,-69.3077	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0587	0/0:112:112,0:112:3977:0:0:0,-33.7154,-357.093	0/0:47:46,1:46:1617:1:36:0,-10.5592,-142.16	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.3057	0/1:8:5,3:5:176:3:108:-7.6416,0,-13.7768	0/1:87:33,54:33:1162:54:1928:-146.989,0,-78.554	0/0:93:93,0:93:3287:0:0:0,-27.9958,-295.96	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:122:53,69:53:1896:69:2434:-181.562,0,-134.186	0/0:130:128,2:128:4515:2:72:0,-32.3144,-399.315	0/1:50:26,24:26:921:24:852:-61.3593,0,-68.0968	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.745	0/1:122:55,67:55:1951:67:2373:-175.761,0,-139.102	0/1:119:39,80:39:1400:80:2845:-219.638,0,-90.4414	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.143	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.13	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.159	0/1:10:2,8:2:72:8:288:-23.0399,0,-3.82642	0/0:90:89,0:89:3148:0:0:0,-26.7917,-282.4	0/1:56:28,28:28:995:28:1004:-73.3162,0,-72.6864	0/0:156:156,0:156:5498:0:0:0,-46.9607,-494.668	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.473	0/1:144:78,66:78:2791:66:2355:-168.305,0,-207.76	0/1:49:14,35:14:500:35:1235:-96.1711,0,-30.5811	0/1:3:1,2:1:36:2:72:-5.92394,0,-2.69518	0/0:57:57,0:57:2023:0:0:0,-17.1587,-182.2	0/0:94:94,0:94:3288:0:0:0,-28.2968,-294.839	0/0:133:133,0:133:4736:0:0:0,-40.037,-424.924	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.436	0/0:71:71,0:71:2489:0:0:0,-21.3731,-224.21	0/1:50:25,25:25:892:25:887:-64.9082,0,-65.5224	0/0:122:121,1:121:4234:1:36:0,-33.1364,-377.596	0/1:10:5,5:5:180:5:180:-13.5221,0,-13.5408	0/1:80:43,37:43:1519:37:1328:-95.2516,0,-112.823	0/0:79:79,0:79:2807:0:0:0,-23.7814,-252.65	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.145	0/1:119:54,65:54:1915:65:2328:-172.795,0,-136.655	0/1:89:32,57:32:1144:57:2015:-154.016,0,-76.4778	0/0:114:114,0:114:4019:0:0:0,-34.3174,-361.739	0/0:110:110,0:110:3897:0:0:0,-33.1133,-350.677
chr04	9541130	.	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chr04	9676823	.	G	A	46743.6	PASS	AB=0.523498;ABP=27.9103;AC=46;AF=0.244681;AN=188;AO=2749;CIGAR=1X;DP=10690;DPB=10690;DPRA=1.33298;EPP=5972.39;EPPR=17240.2;GTI=1;LEN=1;MEANALT=1.05455;MQM=59.6206;MQMR=59.9458;NS=94;NUMALT=1;ODDS=1.11539;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98368;QR=283558;RO=7938;RPL=0;RPP=5972.39;RPPR=17240.2;RPR=2749;RUN=1;SAF=2749;SAP=5972.39;SAR=0;SRF=7938;SRP=17240.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:29,15:29:1044:15:540:-35.6912,0,-81.0295	0/0:133:133,0:133:4764:0:0:0,-40.037,-428.917	0/0:245:244,1:244:8728:1:36:0,-70.1541,-781.879	0/0:267:267,0:267:9503:0:0:0,-80.375,-855.231	0/0:78:76,2:76:2712:2:72:0,-16.6436,-237.488	0/0:49:49,0:49:1729:0:0:0,-14.7505,-155.893	0/1:175:96,79:96:3452:79:2832:-202.433,0,-258.211	0/0:189:186,2:186:6607:2:72:0,-50.1167,-587.87	0/1:95:37,58:37:1328:58:2084:-159.106,0,-91.2244	0/0:117:117,0:117:4177:0:0:0,-35.2205,-376.08	0/0:60:60,0:60:2147:0:0:0,-18.0618,-193.269	0/0:93:93,0:93:3309:0:0:0,-27.9958,-298.015	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.569	0/1:62:26,36:26:936:36:1292:-97.9199,0,-65.8956	0/1:80:45,35:45:1604:35:1256:-89.2453,0,-120.568	0/0:125:125,0:125:4471:0:0:0,-37.6287,-402.559	0/1:69:31,38:31:1116:38:1368:-102.614,0,-79.9806	0/1:59:28,31:28:1004:31:1112:-82.6306,0,-72.9151	0/1:266:101,165:101:3601:165:5890:-450.111,0,-244.214	0/1:152:67,85:67:2389:85:3048:-228.686,0,-169.399	0/1:154:35,119:35:1252:119:4272:-338.284,0,-66.6265	0/1:95:40,55:40:1440:55:1968:-148.78,0,-101.3	0/0:120:109,11:109:3908:11:396:0,-0.140849,-315.913	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/1:355:174,181:174:6185:181:6428:-471.685,0,-449.886	0/1:229:128,101:128:4560:101:3613:-256.428,0,-341.625	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:321:155,166:155:5513:166:5929:-437.077,0,-399.665	0/1:221:121,100:121:4329:100:3561:-253.662,0,-323.25	0/0:149:149,0:149:5332:0:0:0,-44.8535,-480.014	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:9:5,4:5:180:4:144:-10.5903,0,-13.8428	0/0:214:214,0:214:7646:0:0:0,-64.4204,-688.174	0/0:257:256,1:256:9139:1:36:0,-73.7664,-818.883	0/1:83:34,49:34:1220:49:1760:-133.486,0,-85.1213	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:234:122,112:122:4359:112:3990:-288.83,0,-322.037	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:111:75,36:75:2661:36:1296:-83.4799,0,-206.321	0/1:75:32,43:32:1152:43:1538:-116.005,0,-81.4129	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.393	0/1:125:64,61:64:2277:61:2188:-159.538,0,-167.55	0/1:126:75,51:75:2673:51:1825:-126.57,0,-202.871	0/1:201:105,95:105:3729:95:3386:-243.781,0,-275.286	0/0:143:143,0:143:5116:0:0:0,-43.0473,-460.581	0/0:129:129,0:129:4604:0:0:0,-38.8329,-414.526	0/0:201:201,0:201:7185:0:0:0,-60.507,-646.702	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:161:78,83:78:2808:83:2988:-220.41,0,-204.493	0/1:73:26,47:26:917:47:1692:-130.584,0,-60.8694	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:148:147,1:147:5218:1:36:0,-40.9542,-465.892	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.306	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.312	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/1:84:37,47:37:1309:47:1674:-125.583,0,-92.823	0/0:104:103,1:103:3673:1:36:0,-27.7088,-327.174	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:231:99,132:99:3540:132:4722:-355.584,0,-249.243	0/0:173:169,4:169:6036:4:144:0,-38.7646,-530.032	0/1:90:42,48:42:1504:48:1701:-126.273,0,-108.562	0/0:131:131,0:131:4673:0:0:0,-39.4349,-420.715	0/1:211:100,111:100:3592:111:3969:-293.863,0,-259.968	0/1:132:45,87:45:1588:87:3111:-239.689,0,-103.472	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:115:115,0:115:4136:0:0:0,-34.6184,-372.414	0/0:93:93,0:93:3323:0:0:0,-27.9958,-299.232	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	0/0:141:141,0:141:5028:0:0:0,-42.4452,-452.666	0/1:75:39,35:39:1400:35:1245:-89.7091,0,-103.663	0/0:186:186,0:186:6650:0:0:0,-55.9916,-598.442	0/0:223:222,1:222:7961:1:36:0,-63.5314,-712.911	0/1:201:92,109:92:3285:109:3909:-291.277,0,-235.361	0/1:110:51,59:51:1828:59:2120:-157.94,0,-131.679	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:118:117,1:117:4208:1:36:0,-31.9233,-375.3	0/0:138:138,0:138:4898:0:0:0,-41.5421,-440.97	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.252	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.916	0/1:102:51,51:51:1823:51:1836:-134.809,0,-133.645	0/0:125:125,0:125:4441:0:0:0,-37.6287,-399.774	0/1:46:25,21:25:900:21:756:-54.5198,0,-67.4736	0/1:79:35,44:35:1252:44:1584:-118.75,0,-89.2037	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:52:52,0:52:1836:0:0:0,-15.6536,-165.521	0/1:118:65,53:65:2324:53:1908:-136.465,0,-173.853	0/1:81:34,47:34:1220:47:1673:-126.465,0,-85.7234	0/0:145:145,0:145:5165:0:0:0,-43.6493,-464.859	0/0:126:125,1:125:4492:1:36:0,-34.3315,-400.849
chr04	9747300	.	G	C	25690.8	PASS	AB=0.491892;ABP=4.80617;AC=44;AF=0.234043;AN=188;AO=1558;CIGAR=1X;DP=6778;DPB=6778;DPRA=1.22049;EPP=3386.16;EPPR=11312;GTI=1;LEN=1;MEANALT=1.11111;MQM=59.982;MQMR=59.9904;NS=94;NUMALT=1;ODDS=0.0127348;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55585;QR=186386;RO=5212;RPL=1558;RPP=3386.16;RPPR=11312;RPR=0;RUN=1;SAF=0;SAP=3386.16;SAR=1558;SRF=0;SRP=11320.7;SRR=5212;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/0:116:116,0:116:4145:0:0:0,-34.9195,-373.232	0/0:114:113,1:113:4032:1:36:0,-30.7191,-359.461	0/0:114:113,1:113:4047:1:36:0,-30.7191,-360.818	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:75:31,44:31:1116:44:1568:-118.83,0,-78.1744	0/0:133:133,0:133:4753:0:0:0,-40.037,-427.927	0/1:94:56,38:56:2008:38:1353:-93.7716,0,-152.697	0/0:91:90,1:90:3216:1:36:0,-23.7955,-286.065	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:48:48,0:48:1719:0:0:0,-14.4494,-154.995	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:47:20,27:20:707:27:957:-72.2955,0,-49.8062	0/1:37:29,8:29:1044:8:288:-15.1293,0,-83.1367	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.593	0/1:40:20,20:20:708:20:720:-53.0876,0,-52.0044	0/1:37:19,18:19:684:18:648:-47.5138,0,-50.7522	0/1:119:62,57:62:2216:57:2040:-148.049,0,-163.882	0/1:108:45,63:45:1607:63:2209:-166.559,0,-112.408	0/1:38:20,18:20:712:18:640:-46.4902,0,-52.9675	0/1:70:30,40:30:1080:40:1440:-108.823,0,-76.4388	0/0:99:98,0:98:3497:0:0:0,-29.5009,-314.58	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/1:229:97,131:97:3450:131:4660:-350.562,0,-241.716	0/1:115:63,52:63:2243:52:1866:-133.601,0,-167.515	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:134:83,51:83:2976:51:1832:-124.823,0,-227.734	0/1:98:60,38:60:2143:38:1348:-92.1193,0,-163.636	0/0:101:99,2:99:3537:2:72:0,-23.5673,-311.701	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:183:182,0:182:6522:0:0:0,-54.7875,-586.701	0/0:120:120,0:120:4284:0:0:0,-36.1236,-385.736	0/1:50:28,22:28:1008:22:788:-56.1933,0,-75.9849	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:106:54,52:54:1936:52:1834:-133.429,0,-142.607	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:76:38,38:38:1368:38:1368:-100.543,0,-100.543	0/1:50:25,25:25:896:25:896:-65.9089,0,-65.9089	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/1:98:52,46:52:1868:46:1656:-119.827,0,-138.898	0/1:104:53,51:53:1892:51:1832:-133.854,0,-139.251	0/1:112:40,72:40:1436:72:2571:-197.925,0,-95.8223	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/0:73:72,1:72:2572:1:36:0,-18.3769,-228.132	0/0:160:158,1:158:5644:1:36:0,-44.6253,-504.484	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:118:65,53:65:2320:53:1892:-135.036,0,-173.539	0/1:31:19,11:19:676:11:396:-26.592,0,-51.7775	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:85:85,0:85:3032:0:0:0,-25.5875,-273.111	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.184	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:20:17,3:17:612:3:108:-4.05457,0,-49.3928	0/1:88:42,46:42:1508:46:1616:-119.235,0,-109.524	0/0:123:123,0:123:4398:0:0:0,-37.0267,-395.992	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:178:117,61:117:4196:61:2192:-143.962,0,-324.237	0/0:129:128,1:128:4576:1:36:0,-35.2346,-408.408	0/1:65:40,24:40:1432:24:852:-57.3744,0,-109.552	0/0:55:54,1:54:1923:1:36:0,-12.9584,-169.748	0/1:133:47,85:47:1688:85:3016:-231.573,0,-112.111	0/1:86:28,58:28:1008:58:2069:-160.59,0,-65.1478	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.443	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/1:18:14,3:14:500:3:108:-4.71021,0,-39.9989	0/0:92:92,0:92:3280:0:0:0,-27.6948,-295.421	0/1:62:39,23:39:1400:23:809:-54.4644,0,-107.635	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:135:135,0:135:4832:0:0:0,-40.639,-435.035	0/1:69:46,23:46:1652:23:824:-53.7122,0,-128.197	0/1:67:27,40:27:960:40:1428:-108.649,0,-66.5473	0/1:8:4,4:4:132:4:144:-10.9054,0,-9.79826	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:57:56,1:56:1992:1:36:0,-13.5604,-175.956	0/0:179:178,1:178:6364:1:36:0,-50.2861,-569.253	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.895	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:56:26,30:26:932:30:1076:-80.2952,0,-67.3412	0/0:164:164,0:164:5900:0:0:0,-49.3689,-531.106	0/1:41:20,21:20:712:21:752:-55.664,0,-52.0644	0/1:94:34,60:34:1216:60:2147:-165.2,0,-81.4497	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:84:38,46:38:1364:46:1643:-122.871,0,-97.7742	0/1:47:17,30:17:600:30:1063:-81.8316,0,-40.1808	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:79:79,0:79:2831:0:0:0,-23.7814,-255.028
chr04	9752648	.	T	C	110216	PASS	AB=0.472985;ABP=24.9503;AC=143;AF=0.768817;AN=186;AO=5193;CIGAR=1X;DP=7026;DPB=7026;DPRA=0;EPP=11097.8;EPPR=3937.79;GTI=2;LEN=1;MEANALT=1.05376;MQM=59.9621;MQMR=59.9978;NS=93;NUMALT=1;ODDS=0.95316;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185548;QR=65554;RO=1828;RPL=5172;RPP=11097.8;RPPR=3937.79;RPR=21;RUN=1;SAF=0;SAP=11279.5;SAR=5193;SRF=0;SRP=3972.46;SRR=1828;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:11,20:11:396:20:716:-55.4358,0,-26.6508	1/1:87:0,87:0:0:87:3114:-280.487,-26.1896,0	1/1:102:0,102:0:0:102:3651:-328.794,-30.7051,0	1/1:125:0,125:0:0:125:4488:-404.088,-37.6288,0	1/1:38:0,37:0:0:37:1313:-118.11,-11.1381,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:86:48,38:48:1724:38:1364:-97.0859,0,-129.557	1/1:114:1,113:1:36:113:4041:-360.277,-30.7191,0	0/1:65:23,42:23:828:42:1500:-115.728,0,-55.2772	1/1:44:0,44:0:0:44:1552:-139.941,-13.2453,0	1/1:47:0,47:0:0:47:1683:-151.757,-14.1484,0	1/1:52:0,52:0:0:52:1845:-166.328,-15.6536,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	0/1:57:33,24:33:1188:24:851:-59.7451,0,-90.0699	0/1:38:20,18:20:716:18:648:-47.2127,0,-53.3286	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:53:25,28:25:900:28:994:-73.8192,0,-65.3664	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/1:98:44,53:44:1584:53:1881:-140.007,0,-113.292	0/1:79:34,45:34:1224:45:1612:-121.589,0,-86.6857	0/1:127:80,47:80:2846:47:1692:-114.336,0,-218.145	0/1:59:33,26:33:1180:26:919:-65.2648,0,-88.7473	1/1:87:0,87:0:0:87:3085:-277.876,-26.1896,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	0/1:273:159,114:159:5693:114:4073:-284.574,0,-430.305	0/1:199:98,100:98:3524:100:3562:-260.823,0,-257.404	1/1:20:1,19:1:36:19:672:-57.208,-2.42233,0	0/1:263:149,114:149:5348:114:4073:-287.584,0,-402.28	0/1:95:46,49:46:1640:49:1739:-128.196,0,-119.291	1/1:96:0,96:0:0:96:3436:-309.452,-28.8989,0	.:.:.:.:.:.:.:.	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:154:0,154:0:0:154:5509:-495.924,-46.3586,0	1/1:129:0,129:0:0:129:4589:-413.177,-38.8329,0	0/1:38:18,20:18:644:20:713:-53.0574,0,-46.8515	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:121:60,61:60:2152:61:2179:-159.951,0,-157.523	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:147:78,69:78:2800:69:2458:-177.223,0,-207.988	0/1:52:30,22:30:1080:22:792:-55.9521,0,-81.8597	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:90:50,40:50:1800:40:1427:-101.634,0,-135.189	0/1:98:53,45:53:1904:45:1612:-115.869,0,-142.137	0/1:156:71,85:71:2548:85:3027:-225.699,0,-182.61	1/1:109:0,109:0:0:109:3907:-351.822,-32.8123,0	1/1:112:0,112:0:0:112:4024:-362.347,-33.7154,0	1/1:154:1,153:1:36:153:5461:-488.02,-42.7603,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:95:38,57:38:1364:57:2052:-156.353,0,-94.4629	0/1:38:14,24:14:489:24:864:-66.6434,0,-32.8998	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:70:0,70:0:0:70:2486:-223.991,-21.0721,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/1:68:36,32:36:1296:32:1135:-81.988,0,-96.4739	1/1:106:2,104:2:72:104:3732:-329.243,-25.0725,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:169:88,81:88:3145:81:2896:-210.002,0,-232.398	1/1:157:0,157:0:0:157:5602:-504.297,-47.2617,0	0/1:60:29,31:29:1044:31:1116:-82.6899,0,-76.213	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:113:62,51:62:2213:51:1824:-130.425,0,-165.417	0/1:125:84,41:84:3024:41:1451:-93.2551,0,-234.761	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:57:0,57:0:0:57:2040:-183.871,-17.1587,0	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0491	1/1:123:0,122:0:0:122:4323:-388.844,-36.7257,0	0/1:54:20,34:20:712:34:1190:-91.1454,0,-48.151	1/1:121:0,121:0:0:121:4297:-386.74,-36.4246,0	1/1:116:0,116:0:0:116:4157:-374.311,-34.9195,0	0/1:84:55,29:55:1972:29:1044:-68.9883,0,-152.468	0/1:100:56,44:56:2008:44:1584:-112.749,0,-150.89	0/1:5:2,3:2:72:3:97:-7.54484,0,-5.33157	1/1:99:1,98:1:36:98:3516:-313.051,-26.2037,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:186:0,186:0:0:186:6631:-596.87,-55.9916,0	1/1:92:0,92:0:0:92:3296:-296.859,-27.6948,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/1:29:16,13:16:568:13:464:-33.3676,0,-42.722	0/1:55:30,25:30:1080:25:900:-64.7644,0,-80.9566	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:87:34,53:34:1220:53:1875:-142.836,0,-83.9172	0/1:37:26,11:26:932:11:396:-24.8446,0,-73.0608	1/1:91:0,91:0:0:91:3255:-293.17,-27.3937,0	1/1:68:0,67:0:0:67:2399:-215.844,-20.169,0
chr04	9857210	.	A	T	162064	PASS	AB=0.448984;ABP=120.881;AC=143;AF=0.760638;AN=188;AO=7763;CIGAR=1X;DP=10649;DPB=10649;DPRA=0;EPP=16860.2;EPPR=6248.16;GTI=1;LEN=1;MEANALT=1.08511;MQM=52.3384;MQMR=59.6318;NS=94;NUMALT=1;ODDS=0.251182;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277493;QR=102861;RO=2876;RPL=0;RPP=16860.2;RPPR=6248.16;RPR=7763;RUN=1;SAF=7763;SAP=16860.2;SAR=0;SRF=2876;SRP=6248.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:468:14:485:-35.6191,0,-34.3318	1/1:174:0,174:0:0:174:6215:-553.745,-52.3792,0	1/1:150:0,150:0:0:150:5344:-478.768,-45.1545,0	1/1:250:0,250:0:0:250:8939:-800.709,-75.2575,0	1/1:126:0,126:0:0:126:4520:-405.886,-37.9298,0	1/1:122:0,122:0:0:122:4363:-391.865,-36.7257,0	0/1:97:51,46:51:1824:46:1640:-118.11,0,-135.229	1/1:260:0,260:0:0:260:9290:-831.234,-78.2678,0	0/1:104:57,47:57:2044:47:1679:-119.328,0,-152.925	1/1:153:0,153:0:0:153:5469:-490.709,-46.0576,0	1/1:80:0,80:0:0:80:2863:-256.71,-24.0824,0	1/1:71:0,70:0:0:70:2503:-223.681,-21.0721,0	1/1:78:0,78:0:0:78:2782:-249.537,-23.4803,0	1/1:84:0,84:0:0:84:3016:-270.53,-25.2865,0	0/1:83:45,38:45:1620:38:1368:-98.1692,0,-121.096	0/1:87:45,42:45:1616:42:1504:-109.112,0,-119.453	1/1:94:0,94:0:0:94:3380:-303.205,-28.2968,0	0/1:71:33,38:33:1188:38:1364:-101.018,0,-85.8555	0/1:63:32,31:32:1148:31:1112:-80.5281,0,-84.6649	0/1:290:188,102:188:6707:102:3641:-239.677,0,-516.159	0/1:134:87,47:87:3099:47:1679:-110.202,0,-238.56	0/1:80:63,17:63:2241:17:608:-30.8518,0,-177.86	0/1:46:17,29:17:612:29:1036:-78.3331,0,-41.5598	0/1:108:13,95:13:468:95:3412:-273.967,0,-9.94377	1/1:58:0,58:0:0:58:2076:-186.435,-17.4597,0	0/1:378:214,164:214:7648:164:5853:-410.658,0,-574.526	0/1:199:113,86:113:4045:86:3070:-216.011,0,-304.074	1/1:71:0,71:0:0:71:2537:-227.981,-21.3731,0	0/1:171:88,83:88:3153:83:2950:-213.616,0,-232.503	0/1:208:104,104:104:3721:104:3709:-270.088,0,-272.446	1/1:93:0,93:0:0:93:3298:-295.844,-27.9958,0	0/1:6:4,2:4:144:2:72:-5.02085,0,-11.5074	0/1:18:9,9:9:324:9:324:-24.0455,0,-24.0827	1/1:9:0,9:0:0:9:324:-29.4317,-2.70927,0	1/1:7:0,7:0:0:7:252:-22.9711,-2.10721,0	0/1:9:3,6:3:108:6:201:-15.6659,0,-7.3659	1/1:248:0,248:0:0:248:8871:-796.058,-74.6554,0	1/1:234:0,234:0:0:234:8320:-745.926,-70.441,0	0/1:81:50,31:50:1796:31:1112:-75.5774,0,-137.503	0/1:4:3,1:3:108:1:36:-2.38905,0,-8.85993	0/1:179:87,91:87:3113:91:3257:-238.306,0,-226.308	1/1:55:0,55:0:0:55:1980:-177.651,-16.5567,0	0/1:170:95,75:95:3401:75:2673:-188.721,0,-255.002	0/1:91:47,44:47:1677:44:1576:-113.973,0,-123.784	1/1:94:0,94:0:0:94:3364:-301.807,-28.2968,0	0/1:140:56,84:56:2001:84:2999:-227.235,0,-138.211	0/1:180:100,80:100:3577:80:2864:-202.693,0,-267.897	0/1:214:117,97:117:4200:97:3454:-245.345,0,-313.734	1/1:162:0,162:0:0:162:5772:-517.475,-48.7669,0	1/1:147:0,147:0:0:147:5272:-473.136,-44.2514,0	1/1:132:0,132:0:0:132:4710:-422.53,-39.736,0	1/1:24:0,24:0:0:24:856:-77.1562,-7.22472,0	0/1:172:92,77:92:3285:77:2756:-194.768,0,-244.491	0/1:66:30,35:30:1076:35:1256:-93.1043,0,-77.2128	1/1:14:0,14:0:0:14:500:-45.2206,-4.21442,0	1/1:124:0,124:0:0:124:4414:-396.526,-37.3277,0	1/1:59:2,57:2:72:57:2037:-176.017,-10.924,0	1/1:18:0,18:0:0:18:636:-57.4202,-5.41854,0	0/1:30:19,11:19:680:11:396:-26.7211,0,-52.4983	0/1:78:43,35:43:1548:35:1248:-88.6006,0,-116.119	1/1:123:0,123:0:0:123:4428:-397.251,-37.0267,0	1/1:4:0,4:0:0:4:144:-13.2883,-1.20412,0	0/1:266:168,98:168:5946:98:3509:-234.508,0,-455.151	1/1:234:8,226:8:288:226:8081:-697.13,-44.1844,0	0/1:163:84,79:84:2990:79:2821:-204.413,0,-220.251	1/1:59:0,59:0:0:59:2105:-188.558,-17.7608,0	0/1:181:106,75:106:3793:75:2675:-186.021,0,-286.695	0/1:110:77,33:77:2745:33:1175:-72.7501,0,-214.161	1/1:18:0,18:0:0:18:640:-57.843,-5.41854,0	1/1:106:0,106:0:0:106:3768:-337.225,-31.9092,0	1/1:105:0,104:0:0:104:3744:-335.123,-31.3071,0	0/1:30:19,11:19:680:11:392:-26.502,0,-52.4983	1/1:76:0,76:0:0:76:2732:-244.958,-22.8783,0	0/1:66:32,34:32:1152:34:1216:-89.5739,0,-84.1213	1/1:138:0,138:0:0:138:4944:-443.888,-41.5421,0	1/1:96:0,96:0:0:96:3425:-306.548,-28.8989,0	0/1:186:101,85:101:3621:85:3031:-215.726,0,-270.066	0/1:127:70,57:70:2505:57:2005:-141.074,0,-187.445	0/1:10:7,3:7:237:3:108:-7.03954,0,-18.6405	1/1:125:0,125:0:0:125:4454:-399.339,-37.6288,0	1/1:113:0,113:0:0:113:4040:-362.487,-34.0164,0	1/1:289:0,289:0:0:289:10336:-926.252,-86.9977,0	1/1:136:0,135:0:0:135:4835:-433.792,-40.6391,0	1/1:54:0,54:0:0:54:1940:-174.029,-16.2556,0	0/1:117:68,49:68:2436:49:1756:-122.786,0,-184.268	1/1:164:0,164:0:0:164:5895:-527.916,-49.3689,0	0/1:54:27,27:27:972:27:972:-71.3216,0,-71.5423	0/1:87:54,33:54:1944:33:1184:-80.1339,0,-149.008	1/1:111:0,111:0:0:111:3968:-354.949,-33.4143,0	1/1:42:0,42:0:0:42:1508:-135.496,-12.6433,0	0/1:116:62,53:62:2216:53:1899:-135.525,0,-164.716	0/1:117:73,43:73:2624:43:1544:-103.274,0,-200.883	1/1:92:0,92:0:0:92:3296:-295.96,-27.6948,0	1/1:159:0,159:0:0:159:5686:-509.974,-47.8638,0
chr04	9857267	.	A	T,C	255114	PASS	AB=0.452463,0.547372;ABP=122.131,121.307;AC=142,46;AF=0.755319,0.244681;AN=188;AO=8230,3350;CIGAR=1X,1X;DP=11582;DPB=11582;DPRA=50.3348,1.51416;EPP=17874.2,7277.44;EPPR=7.35324;GTI=3;LEN=1,1;MEANALT=1.57609,1.96364;MQM=59.5665,59.5167;MQMR=60;NS=94;NUMALT=2;ODDS=2.02166;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=294891,119414;QR=57;RO=2;RPL=89,57;RPP=17109.5,6790.77;RPPR=7.35324;RPR=8141,3293;RUN=1,1;SAF=89,57;SAP=17109.5,6790.77;SAR=8141,3293;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:90:0,37,53:0:0:37,53:1332,1863:-260.455,-151.772,-140.634,-109.039,0,-93.0847	1/1:90:0,90,0:0:0:90,0:3206,0:-288.545,-27.0927,0,-288.545,-27.0927,-288.545	1/1:337:0,334,3:0:0:334,3:11951,104:-1073.17,-100.544,0,-1064.71,-91.7443,-1063.81	1/1:222:0,219,3:0:0:219,3:7819,108:-702.96,-65.9256,0,-694.147,-56.7535,-693.244	1/1:92:0,92,0:0:0:92,0:3285,0:-295.154,-27.6948,0,-295.154,-27.6948,-295.154	1/1:50:0,50,0:0:0:50,0:1777,0:-159.556,-15.0515,0,-159.556,-15.0515,-159.556	1/2:62:0,35,27:0:0:35,27:1256,957:-180.635,-78.3114,-67.7754,-102.679,0,-94.5516	1/1:149:0,148,1:0:0:148,1:5305,36:-477.132,-44.5524,0,-474.195,-41.2552,-473.894	1/2:118:0,46,72:0:0:46,72:1652,2548:-341.319,-207.293,-193.446,-134.381,0,-112.707	1/1:77:0,77,0:0:0:77,0:2745,0:-246.92,-23.1793,0,-246.92,-23.1793,-246.92	1/1:79:0,79,0:0:0:79,0:2828,0:-254.631,-23.7814,0,-254.631,-23.7814,-254.631	1/1:131:0,131,0:0:0:131,0:4697,0:-422.881,-39.4349,0,-422.881,-39.4349,-422.881	1/1:91:0,91,0:0:0:91,0:3264,0:-293.93,-27.3937,0,-293.93,-27.3937,-293.93	1/1:50:0,50,0:0:0:50,0:1800,0:-162.278,-15.0515,0,-162.278,-15.0515,-162.278	1/2:81:0,42,39:0:0:42,39:1504,1396:-236.759,-114.192,-101.549,-122.925,0,-111.185	1/2:86:0,47,39:0:0:47,39:1692,1392:-251.889,-113.837,-99.6883,-138.41,0,-126.67	1/1:39:0,39,0:0:0:39,0:1404,0:-126.657,-11.7402,0,-126.657,-11.7402,-126.657	1/2:18:0,8,10:0:0:8,10:284,360:-52.8721,-29.734,-27.3258,-23.4951,0,-20.4848	1/2:33:0,22,11:0:0:22,11:788,396:-96.9316,-32.6705,-26.0478,-64.6203,0,-61.309	1/2:233:0,110,123:0:0:110,123:3937,4356:-675.875,-354.961,-321.847,-321.27,0,-284.244	1/2:219:0,98,121:0:0:98,121:3528,4313:-639.762,-351.918,-322.417,-288.202,0,-251.777	1/2:215:0,66,149:0:0:66,149:2372,5306:-625.995,-432.488,-412.62,-193.865,0,-149.012	1/2:156:0,72,84:0:0:72,84:2573,3000:-454.709,-244.932,-223.258,-210.134,0,-184.848	1/1:62:0,61,1:0:0:61,1:2196,36:-197.542,-18.3628,0,-194.605,-15.0656,-194.304	1/1:111:0,110,1:0:0:110,1:3948,36:-355.011,-33.1133,0,-352.073,-29.8161,-351.772	1/2:342:0,157,185:0:0:157,185:5617,6601:-995.923,-538.308,-491.046,-457.972,0,-402.281	1/2:365:0,196,169:0:0:196,169:7016,6019:-1062.49,-490.517,-431.515,-572.33,0,-521.456	1/1:49:0,49,0:0:0:49,0:1764,0:-159.044,-14.7505,0,-159.044,-14.7505,-159.044	1/2:382:0,183,199:0:0:183,199:6584,7051:-1110.55,-573.47,-518.382,-537.434,0,-477.529	1/2:159:0,73,86:0:0:73,86:2597,3080:-462.921,-251.275,-229.3,-212.002,0,-186.114	1/1:81:0,80,1:0:0:80,1:2868,32:-257.61,-24.0824,0,-255.032,-21.1841,-254.731	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/2:31:0,15,16:0:0:15,16:536,558:-89.4361,-45.7298,-41.2143,-44.0594,0,-39.2429	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:24:0,24,0:0:0:24,0:864,0:-78.0817,-7.22472,0,-78.0817,-7.22472,-78.0817	1/2:38:0,20,18:0:0:20,18:720,648:-111.978,-53.2333,-47.2127,-59.1048,0,-53.6863	1/1:202:0,202,0:0:0:202,0:7245,0:-652.088,-60.8081,0,-652.088,-60.8081,-652.088	1/1:146:0,146,0:0:0:146,0:5221,0:-469.032,-43.9504,0,-469.032,-43.9504,-469.032	1/2:53:0,31,22:0:0:31,22:1116,788:-155.655,-64.5997,-55.2677,-91.4136,0,-84.7909	1/2:10:0,7,3:0:0:7,3:252,108:-29.734,-9.17208,-7.06487,-20.9217,0,-20.0187	1/2:152:0,75,77:0:0:75,77:2685,2722:-440.709,-221.751,-199.173,-219.314,0,-196.135	1/1:36:0,36,0:0:0:36,0:1296,0:-116.944,-10.8371,0,-116.944,-10.8371,-116.944	1/2:333:0,110,223:0:0:110,223:3918,7989:-970.172,-651.048,-617.934,-319.481,0,-252.351	1/2:61:0,32,29:0:0:32,29:1152,1036:-178.821,-84.8217,-75.1887,-94.3572,0,-85.6273	1/1:57:0,57,0:0:0:57,0:2044,0:-184.201,-17.1587,0,-184.201,-17.1587,-184.201	1/2:154:0,63,91:0:0:63,91:2264,3230:-447.734,-263.227,-244.262,-184.865,0,-157.471	1/2:222:0,115,107:0:0:115,107:4132,3825:-647.89,-311.385,-276.767,-336.862,0,-304.652	1/2:235:0,111,124:0:0:111,124:3978,4433:-686.085,-361.803,-328.389,-324.639,0,-287.312	1/1:109:0,109,0:0:0:109,0:3890,0:-349.938,-32.8123,0,-349.938,-32.8123,-349.938	1/1:189:0,189,0:0:0:189,0:6785,0:-610.696,-56.8947,0,-610.696,-56.8947,-610.696	1/1:171:0,171,0:0:0:171,0:6148,0:-552.864,-51.4761,0,-552.864,-51.4761,-552.864	1/1:10:0,10,0:0:0:10,0:360,0:-32.5125,-3.0103,0,-32.5125,-3.0103,-32.5125	1/2:227:0,92,135:0:0:92,135:3297,4844:-664.158,-395.28,-367.585,-269.236,0,-228.597	1/2:47:0,21,26:0:0:21,26:756,912:-136.136,-74.4463,-68.1247,-62.0456,0,-54.2188	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:282:0,282,0:0:0:282,0:10105,0:-909.198,-84.8905,0,-909.19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chr04	9923502	.	AGCTC	AGCTT	22693.9	PASS	AB=0.567745;ABP=154.531;AC=46;AF=0.244681;AN=188;AO=2171;CIGAR=4M1X;DP=7780;DPB=7783.6;DPRA=1.09769;EPP=4717.28;EPPR=12078.6;GTI=3;LEN=1;MEANALT=1.26531;MQM=28.8204;MQMR=39.9518;NS=94;NUMALT=1;ODDS=0.467139;PAIRED=0;PAIREDR=0;PAO=9;PQA=250;PQR=0;PRO=0;QA=77835;QR=197460;RO=5561;RPL=0;RPP=4717.28;RPPR=12078.6;RPR=2171;RUN=1;SAF=2171;SAP=4717.28;SAR=0;SRF=5561;SRP=12078.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:16,24:16:559:24:864:-43.3153,0,-35.1448	0/0:105:104,1:104:3696:1:36:0,-29.0494,-308.015	0/0:45:44,0:44:1528:0:0:0,-13.2453,-127.122	0/0:113:113,0:113:4003:0:0:0,-34.0164,-347.733	0/0:74:74,0:74:2620:0:0:0,-22.2762,-223.721	0/0:47:47,0:47:1666:0:0:0,-14.1484,-139.933	0/1:105:49,56:49:1728:56:2012:-114.087,0,-119.346	0/0:91:91,0:91:3198:0:0:0,-27.3937,-268.62	0/1:75:40,34:40:1435:34:1216:-56.9559,0,-98.282	0/0:95:95,0:95:3378:0:0:0,-28.5978,-293.348	0/0:52:51,0:51:1804:0:0:0,-15.3525,-156.558	0/0:66:65,0:65:2301:0:0:0,-19.5669,-192.542	0/0:66:66,0:66:2372:0:0:0,-19.868,-198.899	0/0:41:39,0:39:1395:0:0:0,-11.7402,-117.541	0/1:52:28,22:28:996:22:792:-40.9307,0,-70.7742	0/1:37:13,24:13:467:24:856:-47.769,0,-27.7687	0/0:43:43,0:43:1541:0:0:0,-12.9443,-129.454	0/1:48:22,25:22:789:25:900:-43.2245,0,-52.5268	0/1:74:27,47:27:948:47:1688:-87.0067,0,-56.715	0/1:193:89,101:89:3153:101:3620:-205.971,0,-213.56	0/1:188:88,99:88:3114:99:3544:-186.669,0,-203.872	0/1:128:36,92:36:1284:92:3281:-208.805,0,-73.4419	0/1:100:35,65:35:1245:65:2332:-140.022,0,-77.2796	0/0:86:83,3:83:2941:3:108:0,-18.2272,-245.689	0/0:65:65,0:65:2301:0:0:0,-19.5669,-196.56	0/1:299:131,166:131:4601:166:5948:-361.01,0,-315.243	0/1:171:78,93:78:2747:93:3340:-176.904,0,-180.116	0/0:34:34,0:34:1203:0:0:0,-10.235,-102.822	0/1:183:86,97:86:3058:97:3480:-204.466,0,-210.378	0/1:108:37,71:37:1310:71:2541:-141.143,0,-80.765	0/0:144:140,0:140:4963:0:0:0,-42.1442,-430.451	0/1:6:2,4:2:71:4:144:-8.31777,0,-3.83626	0/1:12:7,5:7:252:5:180:-8.97417,0,-18.4964	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.5341	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.43644	1/1:2:0,2:0:0:2:72:-4.86154,-0.60206,0	0/0:192:190,0:190:6763:0:0:0,-57.1957,-591.394	0/0:229:225,0:225:7958:0:0:0,-67.7317,-680.204	0/1:71:38,31:38:1355:31:1104:-50.4671,0,-91.7987	1/1:4:0,4:0:0:4:144:-10.1239,-1.20412,0	0/1:108:45,63:45:1584:63:2260:-122.278,0,-103.284	0/0:39:37,0:37:1309:0:0:0,-11.1381,-111.02	0/1:44:19,25:19:676:25:892:-47.9065,0,-44.0364	0/1:107:56,51:56:2011:51:1820:-100.495,0,-143.69	0/0:78:76,0:76:2659:0:0:0,-22.8783,-229.075	0/1:76:22,54:22:781:54:1940:-125.738,0,-45.4752	0/1:83:32,51:32:1140:51:1820:-92.5137,0,-71.1365	0/1:68:31,37:31:1092:37:1332:-76.3319,0,-75.0249	0/0:99:99,0:99:3507:0:0:0,-29.802,-302.674	0/0:138:138,0:138:4893:0:0:0,-41.5421,-421.52	0/0:127:127,0:127:4525:0:0:0,-38.2308,-398.244	0/0:9:9,0:9:322:0:0:0,-2.70927,-28.5399	0/1:191:82,109:82:2916:109:3904:-192.681,0,-188.517	0/1:44:22,19:22:783:19:680:-39.2521,0,-56.2624	0/0:5:5,0:5:179:0:0:0,-1.50515,-15.5241	0/0:109:109,0:109:3874:0:0:0,-32.8123,-330.719	0/0:38:37,1:37:1285:1:36:0,-8.53637,-108.806	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.90114	0/1:6:3,3:3:106:3:108:-5.75233,0,-7.47982	0/1:70:24,46:24:851:46:1648:-91.7158,0,-50.3391	0/0:84:84,0:84:3002:0:0:0,-25.2865,-260.244	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.2207	0/1:174:75,99:75:2668:99:3541:-211.419,0,-181.29	0/0:178:178,0:178:6357:0:0:0,-53.5833,-548.337	0/1:52:29,23:29:1040:23:828:-40.3509,0,-73.6288	0/0:44:44,0:44:1558:0:0:0,-13.2453,-135.211	0/1:127:58,67:58:2055:67:2400:-136.944,0,-142.164	0/1:110:30,80:30:1059:80:2868:-174.637,0,-59.6016	0/0:21:21,0:21:752:0:0:0,-6.32163,-64.2331	0/0:59:59,0:59:2099:0:0:0,-17.7608,-174.412	0/0:53:51,0:51:1818:0:0:0,-15.3525,-160.017	0/1:15:5,10:5:175:10:360:-21.8997,0,-11.196	0/0:54:53,1:53:1877:1:36:0,-13.6969,-157.163	0/1:88:28,60:28:981:60:2160:-111.51,0,-57.0721	0/0:104:104,0:104:3700:0:0:0,-31.3071,-314.883	0/0:146:145,1:145:5147:1:36:0,-41.0476,-445.035	0/1:90:42,48:42:1507:48:1728:-82.5466,0,-95.7217	0/1:64:33,31:33:1174:31:1116:-52.0434,0,-80.0052	0/1:7:1,6:1:36:6:216:-11.9657,0,-1.28039	0/0:85:83,0:83:2960:0:0:0,-24.9855,-251.797	0/0:77:77,0:77:2740:0:0:0,-23.1793,-229.112	0/0:226:223,0:223:7902:0:0:0,-67.1297,-686.671	0/0:99:98,0:98:3494:0:0:0,-29.5009,-300.083	0/0:49:49,0:49:1762:0:0:0,-14.7505,-150.749	0/1:79:31,48:31:1106:48:1724:-101.325,0,-72.1565	0/0:140:139,0:139:4936:0:0:0,-41.8432,-426.334	0/1:40:22,18:22:786:18:648:-29.3303,0,-52.5541	0/1:90:44,46:44:1580:46:1656:-78.5924,0,-105.439	0/0:73:73,0:73:2596:0:0:0,-21.9752,-215.627	0/0:25:24,0:24:864:0:0:0,-7.22472,-73.667	0/1:109:48,60:48:1724:60:2156:-115.275,0,-114.382	0/1:69:20,48:20:706:48:1720:-104.632,0,-40.2656	0/0:107:107,0:107:3816:0:0:0,-32.2102,-330.009	0/0:104:104,0:104:3707:0:0:0,-31.3071,-320.706
chr04	9923520	.	CCGGG	CCGGA,TCGGA	141750	PASS	AB=0.418696,0.577638;ABP=222.285,202.957;AC=142,46;AF=0.755319,0.244681;AN=188;AO=5495,2222;CIGAR=4M1X,1X3M1X;DP=7743;DPB=7742.4;DPRA=24.0248,1.16499;EPP=11935.3,4828.02;EPPR=9.52472;GTI=4;LEN=1,5;MEANALT=1.78261,2.21569;MQM=39.9427,28.7988;MQMR=48;NS=94;NUMALT=2;ODDS=0.0355811;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=196515,78936;QR=97;RO=3;RPL=0,0;RPP=11935.3,4828.02;RPPR=9.52472;RPR=5495,2222;RUN=1,1;SAF=5495,2222;SAP=11935.3,4828.02;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,16,26:0:0:16,26:572,917:-94.8113,-51.8991,-47.0826,-43.2141,0,-35.3873	1/1:104:0,103,1:0:0:103,1:3688,36:-308.54,-31.0061,0,-306.539,-28.7484,-306.238	1/1:45:0,45,0:0:0:45,0:1612,0:-132.118,-13.5464,0,-132.118,-13.5464,-132.118	1/1:112:0,110,0:0:0:110,0:3939,0:-341.432,-33.1133,0,-341.432,-33.1133,-341.432	1/1:72:0,72,0:0:0:72,0:2580,0:-220.791,-21.6742,0,-220.791,-21.6742,-220.791	1/1:47:0,47,0:0:0:47,0:1692,0:-141.621,-14.1484,0,-141.621,-14.1484,-141.621	1/2:105:0,49,56:0:0:49,56:1752,2001:-265.633,-128.523,-113.773,-137.427,0,-120.57	1/1:89:0,88,0:0:0:88,0:3144,0:-263.035,-26.4906,0,-263.035,-26.4906,-263.035	1/2:75:0,40,35:0:0:40,35:1436,1229:-178.901,-70.5931,-58.5519,-108.601,0,-98.0648	1/1:95:0,95,0:0:0:95,0:3409,0:-295.089,-28.5979,0,-295.089,-28.5979,-295.089	1/1:52:0,52,0:0:0:52,0:1872,0:-161.824,-15.6536,0,-161.824,-15.6536,-161.824	1/1:65:0,65,0:0:0:65,0:2336,0:-194.973,-19.567,0,-194.973,-19.567,-194.973	1/1:66:0,65,1:0:0:65,1:2336,34:-196.268,-19.567,0,-194.287,-17.3317,-193.986	1/1:41:0,41,0:0:0:41,0:1473,0:-123.804,-12.3422,0,-123.804,-12.3422,-123.804	1/2:52:0,29,23:0:0:29,23:1040,818:-133.086,-51.7761,-43.0462,-81.62,0,-74.6963	1/2:36:0,12,24:0:0:12,24:432,857:-84.4542,-51.743,-48.1306,-33.0259,0,-25.8011	1/1:41:0,41,0:0:0:41,0:1472,0:-123.508,-12.3422,0,-123.508,-12.3422,-123.508	1/2:50:0,22,28:0:0:22,28:792,982:-115.592,-55.3628,-48.7402,-60.5296,0,-52.1007	1/2:72:1,24,47:1:30:24,47:856,1686:-156.312,-92.8298,-87.6332,-61.8012,0,-49.678	1/2:197:0,94,101:0:0:94,101:3357,3604:-489.509,-232.425,-204.128,-257.108,0,-226.704	1/2:185:0,83,102:0:0:83,102:2907,3601:-437.334,-218.852,-193.866,-218.784,0,-188.079	1/2:130:0,36,94:0:0:36,94:1296,3334:-325.221,-223.419,-212.582,-102.135,0,-73.8382	1/2:97:0,32,65:0:0:32,65:1148,2306:-239.507,-149.968,-140.335,-89.8657,0,-70.2988	1/1:82:0,79,3:0:0:79,3:2821,108:-242.348,-23.7814,0,-235.866,-17.0231,-234.963	1/1:64:0,64,0:0:0:64,0:2300,0:-196.296,-19.2659,0,-196.296,-19.2659,-196.296	1/2:299:0,128,170:0:0:128,170:4562,6060:-771.422,-410.257,-371.725,-361.306,0,-310.131	1/2:174:0,78,96:0:0:78,96:2735,3427:-412.23,-206.363,-182.882,-206.169,0,-177.271	1/1:33:0,33,0:0:0:33,0:1184,0:-100.995,-9.93399,0,-100.995,-9.93399,-100.995	1/2:184:1,83,98:1:36:83,98:2942,3479:-458.708,-228.969,-206.922,-227.134,0,-200.57	1/2:110:0,37,73:0:0:37,73:1332,2613:-260.24,-156.997,-145.859,-103.563,0,-81.5875	1/1:139:0,139,0:0:0:139,0:4984,0:-429.717,-41.8432,0,-429.717,-41.8432,-429.717	1/2:7:0,3,4:0:0:3,4:97,144:-15.6137,-8.91983,-8.01674,-6.97182,0,-5.7677	1/2:12:0,7,5:0:0:7,5:248,178:-30.4599,-11.0507,-8.94345,-19.7105,0,-18.2053	1/1:4:0,4,0:0:0:4,0:144,0:-12.5341,-1.20412,0,-12.5341,-1.20412,-12.5341	1/1:2:0,2,0:0:0:2,0:72,0:-6.43644,-0.60206,0,-6.43644,-0.60206,-6.43644	2/2:3:0,0,3:0:0:0,3:0,102:-6.89454,-6.89454,-6.89454,-0.90309,-0.90309,0	1/1:189:0,189,0:0:0:189,0:6766,0:-591.741,-56.8947,0,-591.741,-56.8947,-591.741	1/1:226:0,226,0:0:0:226,0:8076,0:-686.165,-68.0328,0,-686.165,-68.0328,-686.165	1/2:70:0,38,32:0:0:38,32:1364,1131:-165.888,-63.7333,-52.2941,-102.444,0,-92.811	2/2:4:0,0,4:0:0:0,4:0,138:-9.9867,-9.9867,-9.9867,-1.20412,-1.20412,0	1/2:106:0,42,63:0:0:42,63:1481,2231:-249.725,-135.05,-122.407,-114.711,0,-95.746	1/1:39:0,39,0:0:0:39,0:1400,0:-118.411,-11.7402,0,-118.411,-11.7402,-118.411	1/2:46:0,19,27:0:0:19,27:676,946:-108.62,-57.3475,-51.628,-51.5786,0,-43.4508	1/2:107:0,56,51:0:0:56,51:2012,1822:-276.197,-117.423,-100.566,-159.09,0,-143.738	1/1:70:0,69,0:0:0:69,0:2461,0:-211.394,-20.7711,0,-211.394,-20.7711,-211.394	1/2:77:0,22,55:0:0:22,55:788,1965:-195.819,-134.328,-127.705,-61.8233,0,-45.2667	1/2:82:0,31,51:0:0:31,51:1116,1795:-185.825,-101.738,-92.4057,-84.3913,0,-69.0388	1/2:69:0,30,38:0:0:30,38:1050,1348:-169.583,-87.1764,-78.1455,-82.4615,0,-71.0223	1/1:99:0,99,0:0:0:99,0:3514,0:-302.089,-29.802,0,-302.089,-29.802,-302.089	1/1:133:0,133,0:0:0:133,0:4763,0:-410.962,-40.037,0,-410.962,-40.037,-410.962	1/1:127:0,126,0:0:0:126,0:4516,0:-397.354,-37.9298,0,-397.354,-37.9298,-397.354	1/1:9:0,9,0:0:0:9,0:320,0:-28.3882,-2.70927,0,-28.3882,-2.70927,-28.3882	1/2:194:0,82,112:0:0:82,112:2933,3988:-444.816,-222.846,-198.162,-222.27,0,-188.555	1/2:46:0,21,23:0:0:21,23:752,803:-113.648,-53.8661,-47.5444,-59.7763,0,-52.8526	1/1:5:0,5,0:0:0:5,0:180,0:-15.583,-1.50515,0,-15.583,-1.50515,-15.583	1/1:107:0,107,0:0:0:107,0:3817,0:-325.492,-32.2102,0,-325.492,-32.2102,-325.492	1/1:38:0,37,1:0:0:37,1:1317,36:-11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chr04	9923582	.	G	A	23473.1	PASS	AB=0.468119;ABP=30.979;AC=42;AF=0.223404;AN=188;AO=1492;CIGAR=1X;DP=6876;DPB=6876;DPRA=1.18459;EPP=3242.85;EPPR=11692;GTI=0;LEN=1;MEANALT=1.02083;MQM=48.4249;MQMR=59.2946;NS=94;NUMALT=1;ODDS=2.20451;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52966;QR=189888;RO=5383;RPL=0;RPP=3242.85;RPPR=11692;RPR=1492;RUN=1;SAF=0;SAP=3242.85;SAR=1492;SRF=0;SRP=11692;SRR=5383;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:24,19:24:834:19:672:-47.244,0,-62.3955	0/0:93:93,0:93:3267:0:0:0,-27.9958,-294.113	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.056	0/0:109:109,0:109:3887:0:0:0,-32.8123,-349.912	0/0:60:59,1:59:2092:1:36:0,-14.4884,-184.612	0/0:46:46,0:46:1632:0:0:0,-13.8474,-146.649	0/1:101:63,38:63:2204:38:1364:-91.6656,0,-168.201	0/0:147:147,0:147:5175:0:0:0,-44.2514,-465.62	0/1:78:50,28:50:1776:28:983:-63.9084,0,-136.629	0/0:87:87,0:87:3072:0:0:0,-26.1896,-276.693	0/0:64:64,0:64:2266:0:0:0,-19.2659,-204.161	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.556	0/0:56:56,0:56:1937:0:0:0,-16.8577,-174.491	0/0:64:64,0:64:2256:0:0:0,-19.2659,-203.247	0/1:30:17,13:17:608:13:468:-33.2269,0,-46.0188	0/1:44:22,22:22:765:22:792:-57.802,0,-55.9224	0/0:49:49,0:49:1713:0:0:0,-14.7505,-154.386	0/1:40:23,17:23:824:17:608:-41.8978,0,-62.4059	0/1:54:20,34:20:712:34:1224:-91.3013,0,-48.0793	0/1:79:42,37:42:1457:37:1319:-94.7446,0,-107.512	0/1:178:105,73:105:3722:73:2587:-177.971,0,-281.259	0/1:59:20,39:20:712:39:1367:-105.046,0,-46.6459	0/1:95:39,56:39:1354:56:1983:-149.318,0,-93.5557	0/0:88:85,3:85:2997:3:104:0,-16.8436,-259.948	0/0:55:55,0:55:1926:0:0:0,-16.5566,-173.479	0/1:236:120,115:120:4240:115:4101:-295.244,0,-310.753	0/1:133:61,72:61:2167:72:2579:-190.566,0,-155.203	0/0:51:51,0:51:1775:0:0:0,-15.3525,-159.959	0/1:98:57,41:57:2012:41:1468:-102.596,0,-151.812	0/1:103:49,54:49:1729:54:1915:-136.464,0,-124.876	0/0:110:110,0:110:3818:0:0:0,-33.1133,-343.606	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.0994	0/1:10:3,7:3:91:7:244:-19.1571,0,-5.48058	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2769	0/1:7:5,2:5:180:2:72:-4.65416,0,-14.4449	0/0:180:180,0:180:6304:0:0:0,-54.1854,-567.19	0/0:133:133,0:133:4689:0:0:0,-40.037,-421.985	0/1:70:38,32:38:1336:32:1126:-79.2217,0,-99.3736	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:79:52,27:52:1863:27:964:-62.0206,0,-144.142	0/0:31:31,0:31:1074:0:0:0,-9.33193,-96.8038	0/1:60:36,24:36:1283:24:856:-58.717,0,-96.6176	0/1:60:32,28:32:1116:28:1004:-71.809,0,-82.6628	0/0:80:80,0:80:2809:0:0:0,-24.0824,-251.994	0/1:135:67,68:67:2381:68:2428:-176.918,0,-173.887	0/1:95:41,54:41:1468:54:1884:-138.065,0,-103.724	0/1:140:83,57:83:2922:57:2008:-137.692,0,-220.987	0/0:87:87,0:87:3072:0:0:0,-26.1896,-276.695	0/0:107:106,1:106:3769:1:36:0,-28.6272,-335.052	0/0:153:153,0:153:5451:0:0:0,-46.0576,-490.664	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:89:56,33:56:1994:33:1184:-78.8655,0,-152.789	0/1:53:33,20:33:1139:20:703:-47.4921,0,-86.7959	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/0:113:113,0:113:3996:0:0:0,-34.0164,-359.783	0/0:55:55,0:55:1937:0:0:0,-16.5566,-174.449	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.2647	0/1:16:13,3:13:456:3:108:-5.22759,0,-36.5568	0/1:55:32,23:32:1115:23:798:-55.1369,0,-84.0968	0/0:104:104,0:104:3659:0:0:0,-31.3071,-329.423	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:119:62,57:62:2197:57:2044:-147.807,0,-162.014	0/0:181:179,2:179:6354:2:68:0,-48.049,-565.291	0/1:50:29,21:29:1004:21:752:-51.981,0,-75.5561	0/0:40:40,0:40:1386:0:0:0,-12.0412,-124.979	0/1:136:84,52:84:2909:52:1855:-125.369,0,-221.088	0/1:108:32,76:32:1125:76:2663:-205.319,0,-69.0444	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.086	0/0:61:61,0:61:2131:0:0:0,-18.3628,-192.02	0/0:75:75,0:75:2641:0:0:0,-22.5772,-237.868	0/1:7:5,2:5:180:2:72:-4.70058,0,-14.4449	0/0:49:49,0:49:1734:0:0:0,-14.7505,-156.259	0/1:47:22,25:22:765:25:884:-64.6194,0,-54.9825	0/0:110:110,0:110:3847:0:0:0,-33.1133,-346.382	0/0:79:79,0:79:2810:0:0:0,-23.7814,-253.126	0/1:89:60,29:60:2093:29:1032:-65.4408,0,-161.298	0/1:43:25,18:25:888:18:636:-43.6157,0,-67.1311	0/1:11:3,8:3:104:8:288:-22.6666,0,-6.3763	0/0:72:72,0:72:2557:0:0:0,-21.6742,-230.348	0/0:36:35,1:35:1252:1:36:0,-7.27846,-109.376	0/0:161:160,1:160:5694:1:36:0,-44.9631,-508.958	0/0:112:112,0:112:3946:0:0:0,-33.7154,-354.928	0/0:44:44,0:44:1546:0:0:0,-13.2453,-139.417	0/1:57:33,24:33:1131:24:860:-60.2323,0,-84.9121	0/0:132:132,0:132:4652:0:0:0,-39.736,-418.681	0/1:45:26,19:26:932:19:671:-46.1533,0,-70.6525	0/1:61:31,30:31:1078:30:1055:-75.974,0,-78.9281	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.084	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:89:45,44:45:1603:44:1559:-112.334,0,-117.707	0/1:66:24,42:24:860:42:1470:-111.973,0,-57.7191	0/0:58:58,0:58:2064:0:0:0,-17.4597,-185.99	0/0:51:51,0:51:1784:0:0:0,-15.3525,-160.84
chr04	10093813	.	G	A	178328	PASS	AB=0.4758;ABP=29.7052;AC=143;AF=0.760638;AN=188;AO=8404;CIGAR=1X;DP=11177;DPB=11177;DPRA=0;EPP=18243.4;EPPR=6011.47;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9719;MQMR=60;NS=94;NUMALT=1;ODDS=5.35657;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=301068;QR=98522;RO=2767;RPL=8403;RPP=18243.4;RPPR=6011.47;RPR=1;RUN=1;SAF=8404;SAP=18252.1;SAR=0;SRF=2767;SRP=6011.47;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:25,16:25:888:16:576:-39.8328,0,-67.8968	1/1:170:0,170:0:0:170:6096:-548.73,-51.1751,0	1/1:273:1,272:1:36:272:9739:-872.858,-78.5829,0	1/1:222:0,222:0:0:222:7953:-715.791,-66.8287,0	1/1:67:4,63:4:140:63:2268:-191.437,-7.22443,0	1/1:74:1,73:1:36:73:2624:-232.809,-18.6779,0	0/1:164:87,77:87:3092:77:2749:-198.283,0,-229.141	1/1:93:2,91:2:72:91:3272:-287.862,-21.1591,0	0/1:74:34,40:34:1203:40:1428:-106.541,0,-86.2988	1/1:113:0,113:0:0:113:4040:-363.781,-34.0164,0	1/1:130:2,128:2:72:128:4593:-406.695,-32.2972,0	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	1/1:85:0,85:0:0:85:3044:-274.182,-25.5876,0	1/1:195:0,195:0:0:195:7004:-630.42,-58.7009,0	0/1:81:35,46:35:1251:46:1656:-124.945,0,-88.5108	0/1:68:26,42:26:915:42:1489:-113.833,0,-62.1955	1/1:130:0,130:0:0:130:4647:-418.392,-39.1339,0	0/1:77:37,40:37:1295:40:1421:-105.006,0,-93.671	0/1:91:49,42:49:1731:42:1508:-108.621,0,-128.68	0/1:218:108,110:108:3839:110:3936:-288.808,0,-280.084	0/1:175:97,78:97:3450:78:2793:-198.928,0,-258.033	0/1:155:100,55:100:3584:55:1976:-131.455,0,-276.107	0/1:46:31,15:31:1104:15:540:-35.0892,0,-85.8233	1/1:100:0,100:0:0:100:3566:-320.984,-30.103,0	1/1:84:0,84:0:0:84:3001:-270.32,-25.2865,0	0/1:292:150,141:150:5360:141:5055:-367.134,0,-394.574	0/1:187:110,77:110:3935:77:2752:-191.63,0,-298.049	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:288:155,133:155:5532:133:4773:-343.029,0,-411.308	0/1:181:90,91:90:3198:91:3263:-239.403,0,-233.557	1/1:119:0,119:0:0:119:4265:-384.026,-35.8226,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:22:11,11:11:388:11:388:-28.6347,0,-28.6347	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:205:0,205:0:0:205:7354:-661.905,-61.7112,0	1/1:249:0,249:0:0:249:8921:-802.867,-74.9565,0	0/1:117:59,58:59:2099:58:2065:-150.9,0,-153.959	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:228:121,107:121:4308:107:3840:-277.151,0,-319.262	1/1:68:1,67:1:36:67:2400:-212.659,-16.8718,0	0/1:164:62,102:62:2216:102:3664:-280.594,0,-150.336	0/1:59:34,25:34:1207:25:900:-63.5602,0,-91.1745	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:84:35,49:35:1260:49:1764:-133.757,0,-88.419	0/1:138:74,64:74:2648:64:2300:-165.719,0,-197.024	0/1:189:104,85:104:3723:85:3056:-218.371,0,-278.376	1/1:142:0,142:0:0:142:5077:-457.074,-42.7463,0	1/1:156:0,156:0:0:156:5568:-501.243,-46.9607,0	1/1:214:0,214:0:0:214:7676:-690.827,-64.4204,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:203:0,203:0:0:203:7278:-655.07,-61.1091,0	0/1:61:33,28:33:1179:28:1008:-72.6735,0,-88.0544	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:169:100,69:100:3555:69:2464:-171.14,0,-269.283	1/1:21:0,21:0:0:21:743:-67.1905,-6.32163,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/1:149:81,67:81:2873:67:2400:-170.567,0,-213.895	1/1:196:0,195:0:0:195:7003:-629.97,-58.7009,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:184:90,94:90:3196:94:3368:-247.946,0,-232.473	1/1:232:3,229:3:108:229:8208:-728.656,-59.7638,0	0/1:105:43,62:43:1517:62:2214:-167.917,0,-105.213	1/1:78:1,77:1:36:77:2764:-245.4,-19.8821,0	0/1:117:61,55:61:2176:55:1968:-142.115,0,-160.827	0/1:179:118,61:118:4218:61:2192:-143.661,0,-325.915	1/1:66:0,66:0:0:66:2367:-213.288,-19.868,0	1/1:75:0,75:0:0:75:2677:-241.166,-22.5773,0	1/1:130:0,130:0:0:130:4640:-417.762,-39.1339,0	0/1:51:23,28:23:828:28:1008:-75.6838,0,-59.4916	1/1:131:0,131:0:0:131:4689:-422.169,-39.4349,0	0/1:80:23,57:23:828:57:2048:-160.509,0,-50.7617	1/1:236:0,236:0:0:236:8454:-760.854,-71.0431,0	1/1:145:0,145:0:0:145:5196:-467.779,-43.6494,0	0/1:224:109,114:109:3898:114:4092:-300.975,0,-283.523	0/1:118:74,44:74:2643:44:1580:-106.962,0,-202.595	0/1:12:8,4:8:270:4:144:-9.70126,0,-21.0153	1/1:115:0,115:0:0:115:4124:-371.344,-34.6185,0	1/1:188:1,187:1:36:187:6684:-598.036,-52.9954,0	1/1:263:2,261:2:72:261:9352:-834.806,-72.3342,0	1/1:115:0,115:0:0:115:4094:-368.647,-34.6185,0	0/1:98:61,37:61:2167:37:1328:-90.3213,0,-165.795	0/1:99:61,38:61:2148:38:1364:-93.2587,0,-163.784	1/1:143:0,143:0:0:143:5124:-461.302,-43.0473,0	0/1:45:19,26:19:671:26:936:-71.0131,0,-47.1694	0/1:81:43,38:43:1520:38:1355:-97.8663,0,-112.707	1/1:98:1,96:1:36:96:3448:-306.934,-25.9615,0	1/1:122:1,121:1:36:121:4317:-385.103,-33.1274,0	0/1:226:101,125:101:3582:125:4454:-332.996,0,-254.554	0/1:62:44,18:44:1555:18:643:-39.5363,0,-121.577	1/1:91:0,91:0:0:91:3264:-292.959,-27.3937,0	1/1:107:0,107:0:0:107:3828:-344.717,-32.2102,0
chr04	10311080	.	C	T	188543	PASS	AB=0.47873;ABP=27.7665;AC=140;AF=0.752688;AN=186;AO=8986;CIGAR=1X;DP=12291;DPB=12291;DPRA=33.3886;EPP=19481.1;EPPR=7147.18;GTI=3;LEN=1;MEANALT=1.03261;MQM=59.9883;MQMR=59.9967;NS=93;NUMALT=1;ODDS=0.863574;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=321592;QR=117775;RO=3302;RPL=4;RPP=19481.1;RPPR=7138.51;RPR=8982;RUN=1;SAF=0;SAP=19515.9;SAR=8986;SRF=1;SRP=7164.53;SRR=3301;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:30,15:30:1072:15:540:-35.3902,0,-83.2461	1/1:223:0,223:0:0:223:7974:-717.68,-67.1297,0	1/1:118:0,118:0:0:118:4225:-380.428,-35.5215,0	1/1:296:0,296:0:0:296:10571:-951.302,-89.1049,0	1/1:100:1,99:1:36:99:3548:-315.93,-26.5047,0	1/1:79:0,79:0:0:79:2824:-254.399,-23.7814,0	0/1:190:110,80:110:3936:80:2876:-201.88,0,-297.237	1/1:295:2,293:2:72:293:10500:-938.075,-81.9671,0	0/1:122:55,67:55:1968:67:2400:-179.531,0,-140.669	1/1:156:0,156:0:0:156:5592:-503.394,-46.9607,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:74:0,74:0:0:74:2644:-238.206,-22.2762,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:68:31,37:31:1108:37:1332:-99.7123,0,-79.561	0/1:50:26,24:26:903:24:864:-63.0311,0,-66.5323	1/1:65:0,65:0:0:65:2327:-209.69,-19.567,0	0/1:67:33,34:33:1160:34:1224:-89.9801,0,-84.5349	0/1:51:28,23:28:1004:23:828:-59.4916,0,-75.3233	0/1:284:160,124:160:5744:124:4408:-311.399,0,-431.582	0/1:233:109,124:109:3868:124:4444:-329.99,0,-278.176	0/1:169:111,58:111:3960:58:2057:-134.526,0,-305.698	0/1:146:74,72:74:2637:72:2584:-188.858,0,-193.625	1/1:182:9,173:9:324:173:6200:-528.59,-25.2816,0	1/1:104:0,104:0:0:104:3709:-334.011,-31.3071,0	0/1:484:238,246:238:8510:246:8824:-648.445,0,-620.199	0/1:296:143,153:143:5084:153:5461:-402.513,0,-368.601	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:399:210,188:210:7529:188:6756:-487.94,0,-557.478	0/1:200:94,106:94:3364:106:3808:-282.71,0,-242.77	1/1:174:0,174:0:0:174:6244:-562.053,-52.3792,0	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:257:0,257:0:0:257:9238:-831.384,-77.3647,0	1/1:214:1,213:1:36:213:7606:-680.978,-60.8221,0	0/1:60:38,22:38:1341:22:792:-53.5439,0,-102.926	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:278:124,154:124:4437:154:5490:-410.543,0,-315.813	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:223:136,87:136:4842:87:3103:-212.338,0,-368.804	0/1:127:60,67:60:2124:67:2408:-178.745,0,-153.196	1/1:94:0,94:0:0:94:3360:-302.617,-28.2968,0	0/1:115:56,59:56:1993:59:2114:-155.91,0,-145.024	0/1:208:115,92:115:4086:92:3281:-232.925,0,-305.341	0/1:304:156,147:156:5561:147:5244:-380.525,0,-409.043	1/1:172:0,172:0:0:172:6133:-552.069,-51.7772,0	1/1:191:0,191:0:0:191:6799:-611.982,-57.4967,0	1/1:182:0,182:0:0:182:6486:-583.825,-54.7875,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:202:0,202:0:0:202:7228:-650.518,-60.8081,0	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:145:81,64:81:2904:64:2292:-162.892,0,-217.946	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:13:5,8:5:176:8:269:-20.6227,0,-12.2716	0/1:134:75,59:75:2683:59:2124:-151.09,0,-201.376	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:320:178,142:178:6329:142:5108:-363.53,0,-473.373	1/1:313:1,312:1:36:312:11183:-1002.76,-90.6241,0	0/1:136:56,80:56:1966:80:2880:-218.496,0,-136.272	1/1:111:0,111:0:0:111:3938:-354.61,-33.4143,0	0/1:246:118,128:118:4231:128:4577:-338.041,0,-306.915	0/1:162:125,37:125:4457:37:1332:-71.4155,0,-352.534	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:100:0,100:0:0:100:3573:-321.776,-30.103,0	1/1:105:0,105:0:0:105:3764:-338.959,-31.6082,0	0/1:35:19,16:19:671:16:568:-40.9158,0,-50.1797	1/1:101:0,101:0:0:101:3618:-325.778,-30.404,0	0/1:86:31,55:31:1108:55:1959:-150.696,0,-74.1424	1/1:157:0,157:0:0:157:5620:-505.922,-47.2617,0	1/1:167:1,166:1:36:166:5900:-527.513,-46.6737,0	0/1:139:60,79:60:2130:79:2836:-213.635,0,-150.124	0/1:235:125,110:125:4468:110:3954:-285.308,0,-331.549	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:166:0,166:0:0:166:5937:-534.437,-49.971,0	1/1:146:0,146:0:0:146:5221:-470.027,-43.9504,0	1/1:272:0,272:0:0:272:9700:-872.95,-81.8802,0	1/1:117:0,117:0:0:117:4200:-378.18,-35.2205,0	0/1:70:35,35:35:1256:35:1247:-91.4612,0,-92.2732	0/1:121:68,53:68:2393:53:1904:-135.213,0,-179.2	1/1:183:0,183:0:0:183:6565:-590.929,-55.0885,0	0/1:52:25,27:25:892:27:953:-70.4306,0,-64.9461	0/1:94:36,58:36:1284:58:2084:-159.533,0,-87.5666	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	1/1:15:1,14:1:36:14:491:-40.9228,-0.917175,0	0/1:54:26,28:26:936:28:1000:-74.0592,0,-68.3038	0/1:85:50,35:50:1788:35:1260:-88.1179,0,-135.615	1/1:190:1,189:1:36:189:6776:-606.268,-53.5974,0	1/1:116:0,116:0:0:116:4141:-372.873,-34.9195,0
chr04	10311168	.	C	T	240550	PASS	AB=0.514992;ABP=13.0373;AC=141;AF=0.758065;AN=186;AO=8822;CIGAR=1X;DP=11331;DPB=11331;DPRA=0;EPP=19151.1;EPPR=5446.89;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9914;MQMR=60;NS=93;NUMALT=1;ODDS=1.73141;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=315215;QR=88452;RO=2507;RPL=4240;RPP=31.8002;RPPR=6.4481;RPR=4582;RUN=1;SAF=4239;SAP=32.1379;SAR=4583;SRF=1222;SRP=6.4481;SRR=1285;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:32,33:32:1140:33:1176:-86.5808,0,-83.3423	1/1:103:0,103:0:0:103:3694:-332.662,-31.0061,0	1/1:246:0,246:0:0:246:8772:-789.471,-74.0534,0	1/1:236:0,236:0:0:236:8432:-758.88,-71.0431,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:62:0,62:0:0:62:2212:-199.345,-18.6639,0	0/1:65:26,39:26:919:39:1382:-105.11,0,-63.4592	1/1:164:0,164:0:0:164:5832:-524.984,-49.3689,0	0/1:124:54,70:54:1928:70:2499:-187.835,0,-136.469	1/1:147:0,147:0:0:147:5251:-472.726,-44.2514,0	1/1:85:0,85:0:0:85:3028:-272.749,-25.5876,0	1/1:143:0,143:0:0:143:5081:-457.434,-43.0473,0	1/1:123:0,123:0:0:123:4374:-393.836,-37.0267,0	1/1:114:0,114:0:0:114:4072:-366.668,-34.3174,0	0/1:121:64,57:64:2266:57:2052:-148.527,0,-167.777	0/1:90:45,45:45:1603:45:1616:-118.637,0,-117.467	1/1:114:0,114:0:0:114:4092:-368.465,-34.3174,0	0/1:97:45,52:45:1567:52:1859:-138.389,0,-112.117	0/1:75:36,39:36:1237:39:1404:-104.082,0,-89.0491	0/1:162:78,84:78:2741:84:2988:-220.384,0,-198.164	0/1:181:89,91:89:3167:91:3251:-238.265,0,-230.71	0/1:68:38,30:38:1343:30:1076:-76.6828,0,-100.699	0/1:62:26,36:26:913:36:1296:-98.2801,0,-63.8201	1/1:97:4,93:4:144:93:3344:-287.862,-15.8863,0	1/1:115:0,115:0:0:115:4080:-367.384,-34.6185,0	0/1:257:111,146:111:3960:146:5233:-393.74,0,-279.228	0/1:226:101,125:101:3575:125:4445:-332.187,0,-253.925	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	0/1:228:107,121:107:3798:121:4319:-320.25,0,-273.385	0/1:111:55,56:55:1955:56:1997:-146.588,0,-142.811	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.6223	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:365:0,365:0:0:365:13015:-1171.16,-109.876,0	1/1:103:0,103:0:0:103:3691:-332.392,-31.0061,0	0/1:108:51,57:51:1769:57:2036:-151.001,0,-126.977	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:206:95,111:95:3362:111:3976:-296.018,0,-240.783	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	0/1:218:94,124:94:3279:124:4434:-333.606,0,-229.704	0/1:125:63,62:63:2226:62:2224:-162.795,0,-162.975	1/1:136:0,136:0:0:136:4866:-438.094,-40.9401,0	0/1:107:50,56:50:1792:56:2002:-148.184,0,-129.293	0/1:127:59,68:59:2091:68:2419:-179.735,0,-150.229	0/1:173:79,94:79:2811:94:3372:-251.617,0,-201.152	1/1:136:1,135:1:36:135:4830:-431.255,-37.3418,0	1/1:155:0,155:0:0:155:5536:-497.995,-46.6597,0	1/1:161:1,160:1:32:160:5704:-510.28,-45.2665,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:205:0,205:0:0:205:7348:-661.365,-61.7112,0	0/1:31:11,20:11:392:20:711:-54.9837,0,-26.2881	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:114:60,54:60:2082:54:1916:-138.397,0,-153.328	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:14:11,3:11:372:3:108:-5.86075,0,-29.5894	0/1:87:34,53:34:1211:53:1900:-145.088,0,-83.1059	1/1:181:1,180:1:36:180:6439:-575.993,-50.8882,0	.:.:.:.:.:.:.:.	0/1:251:128,123:128:4525:123:4379:-318.724,0,-331.861	1/1:260:2,258:2:72:258:9245:-825.177,-71.4311,0	0/1:102:48,54:48:1724:54:1940:-144.171,0,-124.74	1/1:75:0,75:0:0:75:2679:-241.355,-22.5773,0	0/1:124:62,62:62:2205:62:2213:-162.105,0,-161.386	0/1:110:75,35:75:2632:35:1239:-78.7004,0,-204.011	1/1:77:0,77:0:0:77:2721:-245.134,-23.1793,0	1/1:79:0,79:0:0:79:2805:-252.689,-23.7814,0	1/1:148:0,148:0:0:148:5304:-477.494,-44.5524,0	0/1:25:15,10:15:509:10:360:-25.2186,0,-38.6054	1/1:101:0,101:0:0:101:3588:-323.128,-30.404,0	0/1:133:73,60:73:2573:60:2156:-154.27,0,-191.783	1/1:127:0,127:0:0:127:4556:-410.205,-38.2308,0	1/1:205:1,204:1:21:204:7327:-657.376,-59.6112,0	0/1:187:73,114:73:2590:114:4087:-311.713,0,-177.056	0/1:191:109,82:109:3828:82:2925:-205.987,0,-287.225	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:146:0,146:0:0:146:5201:-468.229,-43.9504,0	1/1:123:0,123:0:0:123:4401:-396.261,-37.0267,0	1/1:252:3,249:3:108:249:8888:-789.817,-65.7844,0	1/1:159:0,159:0:0:159:5694:-512.576,-47.8638,0	0/1:124:55,69:55:1955:69:2476:-185.766,0,-138.897	0/1:110:47,63:47:1644:63:2244:-169.111,0,-115.132	1/1:236:3,233:3:108:233:8301:-737.027,-60.9679,0	0/1:46:24,22:24:848:22:784:-57.0365,0,-62.7923	0/1:146:64,82:64:2245:82:2907:-217.913,0,-158.362	1/1:123:0,123:0:0:123:4398:-395.993,-37.0267,0	1/1:75:0,75:0:0:75:2675:-240.995,-22.5773,0	0/1:149:82,67:82:2840:67:2397:-171.132,0,-210.983	0/1:160:108,52:108:3778:52:1864:-119.875,0,-292.059	1/1:223:0,223:0:0:223:7987:-718.846,-67.1297,0	1/1:214:2,212:2:72:212:7576:-675.042,-57.5837,0
chr04	10311408	.	T	C	145427	PASS	AB=0.49791;ABP=3.18278;AC=143;AF=0.760638;AN=188;AO=6948;CIGAR=1X;DP=9250;DPB=9250;DPRA=0;EPP=15081.7;EPPR=4975.69;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9752;MQMR=59.9791;NS=94;NUMALT=1;ODDS=6.11826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247292;QR=82186;RO=2294;RPL=2;RPP=15073;RPPR=4975.69;RPR=6946;RUN=1;SAF=1;SAP=15081.7;SAR=6947;SRF=0;SRP=4984.37;SRR=2294;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:19,8:19:684:8:284:-17.7755,0,-53.7625	1/1:148:0,148:0:0:148:5275:-474.886,-44.5524,0	1/1:132:0,132:0:0:132:4679:-421.272,-39.736,0	1/1:137:0,137:0:0:137:4888:-440.072,-41.2411,0	1/1:95:1,93:1:36:93:3310:-294.521,-25.0584,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	0/1:89:47,42:47:1684:42:1454:-104.356,0,-125.055	1/1:77:0,77:0:0:77:2743:-247.113,-23.1793,0	0/1:49:24,25:24:864:25:896:-66.2099,0,-63.3321	1/1:92:0,92:0:0:92:3263:-293.89,-27.6948,0	1/1:116:0,116:0:0:116:4145:-373.232,-34.9195,0	1/1:69:0,69:0:0:69:2454:-221.114,-20.7711,0	1/1:88:0,88:0:0:88:3088:-278.147,-26.4906,0	1/1:117:1,116:1:36:116:4123:-367.657,-31.6222,0	0/1:57:32,25:32:1148:25:896:-63.8016,0,-86.4711	0/1:48:27,21:27:972:21:752:-53.5568,0,-73.3485	1/1:88:0,88:0:0:88:3117:-280.757,-26.4906,0	0/1:47:26,21:26:924:21:732:-52.0503,0,-69.3292	0/1:73:39,34:39:1381:34:1224:-88.4919,0,-102.612	0/1:207:95,112:95:3408:112:4012:-298.95,0,-244.621	0/1:62:26,36:26:936:36:1256:-94.6766,0,-65.8956	0/1:227:145,82:145:5177:82:2889:-191.911,0,-397.736	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:102:7,95:7:252:95:3384:-281.746,-7.6761,0	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	0/1:270:138,132:138:4936:132:4669:-339.096,0,-363.113	0/1:181:93,88:93:3344:88:3164:-230.497,0,-246.69	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:387:192,194:192:6887:194:6926:-506.993,0,-503.481	0/1:221:88,133:88:3160:133:4722:-358.61,0,-218.097	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:23:17,6:17:608:6:216:-12.8668,0,-48.1283	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:40:1,39:1:36:39:1385:-121.35,-8.44293,0	1/1:172:0,172:0:0:172:6064:-545.83,-51.7772,0	1/1:179:2,175:2:72:175:6253:-556.026,-46.8054,0	0/1:102:42,60:42:1512:60:2116:-160.003,0,-105.67	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:116:51,65:51:1836:65:2304:-172.7,0,-130.601	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	0/1:141:67,74:67:2399:74:2631:-194.592,0,-173.721	0/1:54:28,26:28:995:26:911:-65.9899,0,-73.6084	1/1:44:0,44:0:0:44:1559:-140.601,-13.2453,0	0/1:103:45,57:45:1616:57:2027:-151.636,0,-114.665	0/1:175:78,97:78:2792:97:3472:-260.012,0,-198.84	0/1:151:91,60:91:3268:60:2119:-145.52,0,-248.884	1/1:112:0,112:0:0:112:3993:-359.543,-33.7154,0	1/1:184:0,184:0:0:184:6550:-589.583,-55.3895,0	1/1:213:0,213:0:0:213:7633:-687.004,-64.1194,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:240:0,240:0:0:240:8531:-767.789,-72.2472,0	0/1:58:21,37:21:741:37:1298:-99.6594,0,-49.5519	1/1:44:1,43:1:32:43:1540:-135.694,-10.046,0	0/1:174:77,97:77:2764:97:3455:-258.784,0,-196.622	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:49:21,28:21:756:28:1000:-75.5649,0,-53.6061	0/1:91:31,60:31:1108:60:2117:-163.403,0,-72.6373	1/1:130:1,129:1:36:129:4584:-409.128,-35.5356,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:179:75,104:75:2692:104:3698:-279.139,0,-188.64	1/1:218:0,218:0:0:218:7748:-697.342,-65.6245,0	0/1:75:34,41:34:1220:41:1472:-110.199,0,-87.5296	1/1:65:0,65:0:0:65:2308:-207.98,-19.567,0	0/1:119:55,64:55:1972:64:2300:-171.438,0,-141.932	0/1:169:126,43:126:4532:43:1544:-88.379,0,-356.681	1/1:38:0,37:0:0:37:1316:-118.421,-11.1381,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:111:0,111:0:0:111:3951:-355.783,-33.4143,0	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	1/1:33:0,33:0:0:33:1165:-103.863,-9.93399,0	0/1:54:19,35:19:675:35:1251:-96.6387,0,-44.8213	1/1:113:1,112:1:36:112:4020:-358.389,-30.4181,0	1/1:156:0,156:0:0:156:5600:-504.12,-46.9607,0	0/1:137:65,71:65:2328:71:2519:-185.662,0,-168.462	0/1:101:53,48:53:1900:48:1724:-125.041,0,-140.874	0/1:20:8,12:8:284:12:432:-33.2006,0,-19.8828	1/1:150:0,150:0:0:150:5361:-482.623,-45.1545,0	1/1:105:0,104:0:0:104:3706:-333.382,-31.3071,0	1/1:228:0,228:0:0:228:8108:-729.739,-68.6348,0	1/1:83:0,83:0:0:83:2930:-263.934,-24.9855,0	0/1:54:30,24:30:1059:24:832:-58.9384,0,-79.3648	0/1:55:27,28:27:964:28:999:-73.6679,0,-70.5202	1/1:101:0,101:0:0:101:3576:-322.046,-30.404,0	0/1:38:19,19:19:684:19:680:-50.09,0,-50.4512	0/1:75:40,35:40:1428:35:1240:-89.3261,0,-106.24	1/1:82:0,82:0:0:82:2912:-262.314,-24.6845,0	1/1:69:0,69:0:0:69:2456:-221.295,-20.7711,0	0/1:155:87,68:87:3111:68:2431:-172.385,0,-233.557	0/1:56:39,17:39:1389:17:589:-36.4756,0,-108.449	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:80:0,80:0:0:80:2843:-256.106,-24.0824,0
chr04	10419791	.	C	T	96375.1	PASS	AB=0.436733;ABP=141.767;AC=139;AF=0.739362;AN=188;AO=4736;CIGAR=1X;DP=6999;DPB=6999;DPRA=7.51505;EPP=10287.1;EPPR=4914.88;GTI=5;LEN=1;MEANALT=1.01075;MQM=59.5285;MQMR=59.9213;NS=94;NUMALT=1;ODDS=0.306344;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168649;QR=79209;RO=2262;RPL=4731;RPP=10243.7;RPPR=4906.2;RPR=5;RUN=1;SAF=4731;SAP=10243.7;SAR=5;SRF=2261;SRP=4906.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:28,10:28:964:10:347:-20.1245,0,-75.6266	1/1:52:0,52:0:0:52:1864:-167.849,-15.6536,0	1/1:77:0,77:0:0:77:2730:-245.715,-23.1793,0	1/1:198:1,197:1:36:197:6993:-625.279,-56.0057,0	1/1:22:1,21:1:36:21:747:-63.956,-3.02439,0	1/1:14:0,14:0:0:14:496:-44.937,-4.21442,0	0/1:58:33,25:33:1124:25:875:-61.603,0,-83.9989	1/1:85:0,85:0:0:85:3022:-271.341,-25.5876,0	0/1:74:30,44:30:1027:44:1572:-119.207,0,-70.4558	1/1:65:0,65:0:0:65:2316:-208.531,-19.567,0	1/1:17:0,17:0:0:17:608:-55.0502,-5.11751,0	1/1:46:0,46:0:0:46:1639:-147.752,-13.8474,0	1/1:44:0,44:0:0:44:1572:-141.668,-13.2453,0	1/1:46:0,46:0:0:46:1639:-147.793,-13.8474,0	0/1:40:19,21:19:647:21:748:-55.5469,0,-46.5048	0/1:35:22,13:22:772:13:464:-31.5532,0,-59.2652	1/1:28:0,28:0:0:28:1004:-90.6677,-8.42884,0	0/1:25:14,11:14:496:11:396:-28.457,0,-37.4485	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:123:71,52:71:2534:52:1868:-131.34,0,-191.279	0/1:251:122,129:122:4232:129:4601:-338.623,0,-305.321	0/1:89:76,13:76:2672:13:455:-14.4894,0,-213.931	0/1:172:101,71:101:3561:71:2535:-176.596,0,-268.494	0/1:73:12,61:12:428:61:2184:-174.838,0,-16.8836	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:172:92,80:92:3269:80:2846:-203.865,0,-242.653	0/1:175:97,78:97:3349:78:2783:-198.018,0,-248.94	1/1:17:0,17:0:0:17:594:-53.786,-5.11751,0	0/1:249:121,128:121:4283:128:4559:-335.308,0,-310.696	0/1:242:141,101:141:4933:101:3584:-249.91,0,-371.27	1/1:238:0,238:0:0:238:8532:-767.775,-71.6451,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	1/1:4:0,4:0:0:4:144:-13.3052,-1.20412,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:11:0,11:0:0:11:392:-35.5915,-3.31133,0	1/1:93:0,93:0:0:93:3301:-297.303,-27.9958,0	1/1:86:1,85:1:36:85:3021:-268.485,-22.2903,0	0/1:27:18,9:18:615:9:315:-20.5593,0,-47.54	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:105:65,40:65:2298:40:1428:-96.223,0,-175.473	1/1:9:0,9:0:0:9:320:-28.6461,-2.70927,0	0/1:106:82,24:82:2885:24:864:-46.157,0,-227.975	0/1:38:18,20:18:622:20:709:-52.6952,0,-44.8629	1/1:41:0,41:0:0:41:1463:-131.96,-12.3422,0	0/1:93:53,40:53:1866:40:1419:-100.011,0,-140.221	0/1:68:50,18:50:1744:18:644:-37.8206,0,-136.771	0/1:126:68,58:68:2361:58:2071:-148.719,0,-174.814	1/1:79:0,79:0:0:79:2799:-252.149,-23.7814,0	1/1:160:0,160:0:0:160:5696:-511.796,-48.1648,0	1/1:109:0,109:0:0:109:3889:-350.14,-32.8123,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:70:0,70:0:0:70:2493:-224.464,-21.0721,0	0/1:103:66,37:66:2309:37:1328:-88.8161,0,-177.06	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	0/1:104:45,59:45:1579:59:2093:-157.31,0,-111.093	1/1:16:0,16:0:0:16:576:-52.1726,-4.81648,0	0/1:13:8,5:8:280:5:176:-12.2716,0,-21.6259	0/1:21:3,18:3:108:18:644:-51.1883,0,-3.75354	0/1:73:45,28:45:1569:28:1008:-69.0484,0,-119.523	1/1:70:0,70:0:0:70:2512:-226.313,-21.0721,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:244:122,122:122:4271:122:4352:-318.398,0,-311.121	1/1:125:0,125:0:0:125:4469:-402.276,-37.6288,0	0/1:71:45,26:45:1612:26:924:-62.1045,0,-123.997	1/1:32:0,32:0:0:32:1150:-103.8,-9.63296,0	0/1:227:120,107:120:4267:107:3802:-274.019,0,-315.791	0/1:183:145,38:145:5084:38:1351:-66.7996,0,-402.189	1/1:11:0,11:0:0:11:396:-35.9745,-3.31133,0	1/1:48:0,48:0:0:48:1707:-153.886,-14.4494,0	1/1:12:0,12:0:0:12:432:-39.2203,-3.61236,0	0/1:31:16,15:16:563:15:536:-39.2429,0,-41.6672	1/1:125:0,125:0:0:125:4407:-396.687,-37.6288,0	0/1:79:36,43:36:1265:43:1512:-112.475,0,-90.3692	1/1:203:1,202:1:32:202:7115:-636.871,-57.9098,0	1/1:138:0,138:0:0:138:4948:-445.462,-41.5421,0	0/1:97:70,27:70:2458:27:964:-57.8769,0,-192.265	0/1:92:52,40:52:1807:40:1422:-100.476,0,-135.206	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:67:0,67:0:0:67:2381:-214.522,-20.169,0	1/1:44:0,44:0:0:44:1550:-139.721,-13.2453,0	1/1:96:0,96:0:0:96:3428:-308.727,-28.8989,0	1/1:38:0,38:0:0:38:1359:-122.601,-11.4391,0	0/1:50:24,26:24:826:26:915:-67.6048,0,-59.6021	0/1:23:11,12:11:383:12:428:-31.9351,0,-27.8796	1/1:67:0,66:0:0:66:2372:-213.363,-19.868,0	0/1:30:17,13:17:548:13:468:-33.4287,0,-40.5969	0/1:39:23,16:23:773:16:576:-40.413,0,-58.1373	1/1:38:0,38:0:0:38:1360:-122.668,-11.4391,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:43:21,22:21:726:22:777:-57.3061,0,-52.7142	0/1:39:27,12:27:923:12:432:-27.481,0,-71.6376	1/1:158:0,158:0:0:158:5596:-503.676,-47.5627,0	1/1:49:0,49:0:0:49:1747:-157.479,-14.7505,0
chr04	10778707	.	GAGT	GAGC,AAGC	134542	PASS	AB=0.547565,0.44863;ABP=54.653,63.2463;AC=143,43;AF=0.768817,0.231183;AN=186;AO=5032,1183;CIGAR=3M1X,1X2M1X;DP=6241;DPB=6241.5;DPRA=0,0.968428;EPP=10929.9,2571.86;EPPR=9.52472;GTI=2;LEN=1,4;MEANALT=1.75269,2.21277;MQM=59.9744,59.9628;MQMR=58.3333;NS=93;NUMALT=2;ODDS=0.633311;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=179729,41753;QR=108;RO=3;RPL=0,0;RPP=10929.9,2571.86;RPPR=9.52472;RPR=5032,1183;RUN=1,1;SAF=5032,1183;SAP=10929.9,2571.86;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,14,10:0:0:14,10:496,349:-69.1435,-28.7347,-24.5203,-40.7598,0,-37.7495	1/1:70:0,69,0:0:0:69,0:2461,0:-221.384,-20.7711,0,-221.384,-20.7711,-221.384	1/1:88:0,87,0:0:0:87,0:3089,0:-277.879,-26.1896,0,-277.879,-26.1896,-277.879	1/1:127:0,126,1:0:0:126,1:4512,36:-405.888,-37.9298,0,-402.951,-34.6325,-402.65	1/1:39:0,39,0:0:0:39,0:1385,0:-124.947,-11.7402,0,-124.947,-11.7402,-124.947	1/1:37:0,36,0:0:0:36,0:1284,0:-115.649,-10.8371,0,-115.649,-10.8371,-115.649	1/2:51:0,31,20:0:0:31,20:1116,710:-149.268,-58.2053,-48.8734,-91.4198,0,-85.3992	1/1:82:0,81,0:0:0:81,0:2912,0:-261.955,-24.3834,0,-261.955,-24.3834,-261.955	1/2:46:0,31,15:0:0:31,15:1112,536:-134.761,-44.0594,-34.7274,-91.0594,0,-86.544	1/1:91:0,90,1:0:0:90,1:3201,36:-287.824,-27.0927,0,-284.886,-23.7955,-284.585	1/1:62:0,62,0:0:0:62,0:2219,0:-199.974,-18.6639,0,-199.974,-18.6639,-199.974	1/1:73:0,73,0:0:0:73,0:2600,0:-234.249,-21.9752,0,-234.249,-21.9752,-234.249	1/1:47:0,47,0:0:0:47,0:1679,0:-151.396,-14.1484,0,-151.396,-14.1484,-151.396	1/1:88:0,87,0:0:0:87,0:3099,0:-278.749,-26.1896,0,-278.749,-26.1896,-278.749	1/2:71:1,42,28:1:36:42,28:1508,1007:-201.935,-79.2239,-69.5148,-120.078,0,-114.583	1/2:50:0,23,27:0:0:23,27:828,962:-146.302,-78.7401,-71.8164,-67.9204,0,-59.7926	1/1:92:0,92,0:0:0:92,0:3308,0:-297.937,-27.6948,0,-297.937,-27.6948,-297.937	1/2:56:0,33,22:0:0:33,22:1180,776:-159.398,-63.1788,-53.2448,-96.2143,0,-89.5916	1/2:33:0,17,16:0:0:17,16:612,562:-96.0331,-46.0925,-40.975,-50.2959,0,-45.4794	1/2:85:0,42,43:0:0:42,43:1508,1508:-246.085,-123.069,-110.425,-123.371,0,-110.427	1/2:105:0,67,38:0:0:67,38:2392,1339:-304.383,-109.371,-89.2019,-195.366,0,-183.927	1/2:65:0,26,39:0:0:26,39:928,1395:-189.763,-114.109,-106.282,-76.0115,0,-64.2713	1/2:78:0,47,31:0:0:47,31:1678,1076:-224.62,-87.8118,-73.6634,-137.159,0,-127.827	1/1:74:0,73,1:0:0:73,1:2611,36:-234.878,-21.9752,0,-231.941,-18.6779,-231.64	1/1:48:0,48,0:0:0:48,0:1716,0:-154.726,-14.4494,0,-154.726,-14.4494,-154.726	1/2:171:0,97,74:0:0:97,74:3448,2565:-489.808,-208.823,-179.623,-281.335,0,-259.059	1/2:82:0,39,43:0:0:39,43:1386,1508:-236.013,-123.067,-111.327,-113.298,0,-100.354	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/2:120:0,69,50:0:0:69,50:2476,1787:-347.794,-145.828,-125.057,-202.091,0,-187.039	1/2:94:0,52,42:0:0:52,42:1868,1486:-273.78,-121.391,-105.737,-152.746,0,-140.102	1/1:79:0,78,0:0:0:78,0:2784,0:-250.441,-23.4803,0,-250.441,-23.4803,-250.441	1/2:2:0,1,1:0:0:1,1:32,36:-5.85565,-3.29724,-2.99621,-2.89828,0,-2.59725	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:6:0,6,0:0:0:6,0:208,0:-19.0587,-1.80618,0,-19.0587,-1.80618,-19.0587	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:235:0,235,0:0:0:235,0:8398,0:-755.825,-70.7421,0,-755.825,-70.7421,-755.825	1/1:136:0,136,0:0:0:136,0:4867,0:-438.183,-40.9401,0,-438.183,-40.9401,-438.183	1/2:46:0,22,24:0:0:22,24:784,859:-134.311,-70.4068,-63.7842,-64.2613,0,-57.0365	.:.:.:.:.:.:.:.	1/2:61:0,26,35:0:0:26,35:932,1240:-177.384,-101.368,-93.5415,-76.3721,0,-65.836	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/2:78:0,51,26:0:0:51,26:1820,912:-222.526,-74.1515,-58.799,-148.31,0,-140.483	1/2:65:0,32,33:0:0:32,33:1143,1170:-188.864,-95.6735,-86.0406,-93.5457,0,-83.6117	1/1:73:0,72,0:0:0:72,0:2555,0:-229.92,-21.6742,0,-229.92,-21.6742,-229.92	1/2:44:0,21,23:0:0:21,23:748,808:-127.085,-66.1147,-59.7931,-61.3237,0,-54.4	1/2:49:0,30,18:0:0:30,18:1072,639:-139.466,-52.0606,-43.0297,-87.4018,0,-81.9833	1/2:95:0,55,40:0:0:55,40:1964,1414:-275.64,-115.516,-98.9592,-160.479,0,-148.437	1/1:109:0,108,0:0:0:108,0:3856,0:-346.877,-32.5112,0,-346.877,-32.5112,-346.877	1/1:92:0,92,0:0:0:92,0:3277,0:-295.12,-27.6948,0,-295.12,-27.6948,-295.12	1/1:142:0,141,0:0:0:141,0:5028,0:-452.408,-42.4452,0,-452.408,-42.4452,-452.408	1/1:5:0,5,0:0:0:5,0:172,0:-15.818,-1.50515,0,-15.818,-1.50515,-15.818	1/1:62:0,62,0:0:0:62,0:2224,0:-200.424,-18.6639,0,-200.424,-18.6639,-200.424	1/2:49:0,24,25:0:0:24,25:856,887:-142.403,-72.6226,-65.3979,-70.1364,0,-62.6106	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:54:0,36,17:0:0:36,17:1292,611:-155.312,-49.9213,-39.0842,-105.465,0,-100.347	1/1:33:0,33,0:0:0:33,0:1168,0:-105.427,-9.93399,0,-105.427,-9.93399,-105.427	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.598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chr04	10778811	.	T	C	269995	PASS	AB=0.487985;ABP=13.3946;AC=143;AF=0.760638;AN=188;AO=12802;CIGAR=1X;DP=17064;DPB=17064;DPRA=0;EPP=27793.5;EPPR=9231.77;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.9836;MQMR=59.988;NS=94;NUMALT=1;ODDS=1.39185;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=457168;QR=151675;RO=4254;RPL=1;RPP=27793.5;RPPR=9231.77;RPR=12801;RUN=1;SAF=0;SAP=27802.2;SAR=12802;SRF=0;SRP=9240.45;SRR=4254;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:90:41,49:41:1472:49:1745:-130.24,0,-105.683	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:104:1,103:1:36:103:3696:-329.243,-27.7088,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:96:43,53:43:1536:53:1885:-141.028,0,-109.634	1/1:102:0,102:0:0:102:3627:-326.635,-30.7051,0	0/1:84:57,27:57:2039:27:972:-62.5114,0,-158.495	1/1:38:0,38:0:0:38:1337:-120.628,-11.4391,0	1/1:454:0,454:0:0:454:16186:-1456.42,-136.668,0	1/1:94:0,94:0:0:94:3336:-300.457,-28.2968,0	1/1:64:1,63:1:36:63:2247:-198.895,-15.6676,0	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	0/1:42:23,19:23:828:19:684:-49.2471,0,-62.1927	0/1:66:30,36:30:1076:36:1288:-96.3556,0,-77.2849	1/1:36:0,36:0:0:36:1287:-116.133,-10.8371,0	0/1:37:21,16:21:752:16:572:-40.6753,0,-56.8681	0/1:160:84,76:84:2993:76:2720:-196.879,0,-221.436	0/1:95:54,41:54:1920:41:1472:-104.178,0,-144.479	0/1:160:72,88:72:2552:88:3145:-235.109,0,-181.764	0/1:56:37,19:37:1324:19:680:-44.6715,0,-102.604	0/1:61:34,27:34:1208:27:968:-69.0745,0,-90.6633	1/1:105:9,96:9:320:96:3416:-278.511,-2.46579,0	1/1:98:0,98:0:0:98:3524:-317.368,-29.5009,0	0/1:146:83,62:83:2984:62:2214:-155.515,0,-224.782	0/1:164:65,99:65:2305:99:3552:-270.519,0,-158.341	1/1:36:0,36:0:0:36:1260:-113.7,-10.8371,0	0/1:115:49,66:49:1722:66:2376:-179.479,0,-120.642	0/1:86:46,40:46:1648:40:1423:-102.478,0,-122.72	1/1:98:0,98:0:0:98:3486:-313.949,-29.5009,0	0/1:649:234,415:234:8361:415:14807:-1137,0,-557.128	0/1:793:431,362:431:15344:362:12939:-925.605,0,-1141.96	1/1:648:0,647:0:0:647:23095:-2077.69,-194.766,0	1/1:1284:0,1284:0:0:1284:45869:-4126.62,-386.523,0	1/1:1078:3,1074:3:108:1074:38491:-3452.82,-314.494,0	1/1:222:0,222:0:0:222:7921:-712.917,-66.8287,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:339:165,174:165:5859:174:6212:-457.127,0,-425.339	0/1:347:129,218:129:4597:218:7755:-593.526,0,-309.437	0/1:37:25,12:25:884:12:428:-27.7207,0,-68.7403	1/1:184:0,184:0:0:184:6550:-589.586,-55.3895,0	0/1:54:31,23:31:1112:23:824:-58.2277,0,-84.1357	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:122:61,61:61:2168:61:2177:-159.468,0,-158.659	0/1:81:47,34:47:1680:34:1205:-84.3705,0,-127.104	0/1:61:29,32:29:1044:32:1144:-84.7768,0,-75.912	1/1:51:0,51:0:0:51:1806:-162.819,-15.3525,0	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	1/1:108:0,108:0:0:108:3872:-348.674,-32.5112,0	1/1:366:1,364:1:36:364:13014:-1167.47,-106.638,0	1/1:109:0,109:0:0:109:3908:-351.913,-32.8123,0	0/1:38:26,12:26:936:12:432:-27.7821,0,-73.1203	1/1:337:0,337:0:0:337:12062:-1085.43,-101.447,0	0/1:76:30,46:30:1076:46:1648:-125.73,0,-74.2746	1/1:147:0,147:0:0:147:5259:-473.446,-44.2514,0	0/1:476:290,185:290:10338:185:6601:-450.929,0,-787.104	0/1:364:191,173:191:6805:173:6179:-446.632,0,-502.949	0/1:37:18,19:18:648:19:684:-50.7522,0,-47.5138	1/1:92:0,91:0:0:91:3245:-291.906,-27.3937,0	1/1:280:1,279:1:36:279:9952:-892.015,-80.6901,0	0/1:26:16,10:16:572:10:360:-24.9175,0,-43.9866	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:51:27,24:27:938:24:856:-62.0086,0,-69.3767	1/1:37:1,36:1:36:36:1292:-112.985,-7.53984,0	0/1:145:95,50:95:3373:50:1779:-116.742,0,-260.137	0/1:116:88,28:88:3128:28:992:-54.6749,0,-246.826	1/1:522:0,521:0:0:521:18490:-1663.33,-156.837,0	1/1:81:0,81:0:0:81:2902:-261.415,-24.3834,0	1/1:49:0,49:0:0:49:1735:-156.434,-14.7505,0	0/1:590:363,227:363:12943:227:8094:-550.851,0,-987.078	1/1:156:0,156:0:0:156:5585:-502.343,-46.9607,0	0/1:58:43,15:43:1548:15:536:-31.1151,0,-122.153	1/1:139:0,139:0:0:139:4981:-448.436,-41.8432,0	1/1:77:0,77:0:0:77:2745:-247.291,-23.1793,0	0/1:32:19,13:19:684:13:464:-32.4645,0,-52.2574	0/1:25:13,12:13:464:12:432:-31.6954,0,-34.5718	0/1:1033:517,516:517:18439:516:18460:-1349.98,0,-1348.08	1/1:46:0,46:0:0:46:1631:-147.078,-13.8474,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:251:0,251:0:0:251:8982:-808.346,-75.5585,0	1/1:41:0,41:0:0:41:1463:-131.965,-12.3422,0	0/1:70:39,31:39:1392:31:1116:-79.6796,0,-104.507	0/1:39:15,24:15:536:24:864:-66.3424,0,-36.8346	1/1:111:0,111:0:0:111:3942:-354.974,-33.4143,0	0/1:20:6,14:6:212:14:492:-38.5912,0,-13.4042	0/1:67:29,38:29:1040:38:1351:-101.721,0,-73.7454	1/1:72:0,72:0:0:72:2570:-231.548,-21.6742,0	1/1:510:0,510:0:0:510:18187:-1636.43,-153.525,0	0/1:954:447,506:447:15943:506:17973:-1329.94,0,-1147.32	0/1:94:60,34:60:2144:34:1220:-81.81,0,-164.931	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:83:0,83:0:0:83:2981:-268.522,-24.9855,0
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chr04	10780198	.	G	A	20731	PASS	AB=0.433894;ABP=118.136;AC=44;AF=0.236559;AN=186;AO=1335;CIGAR=1X;DP=6765;DPB=6765;DPRA=1.10179;EPP=2901.93;EPPR=11781.1;GTI=2;LEN=1;MEANALT=1.08333;MQM=59.9303;MQMR=59.9882;NS=93;NUMALT=1;ODDS=0.945461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47593;QR=194124;RO=5424;RPL=1335;RPP=2901.93;RPPR=11781.1;RPR=0;RUN=1;SAF=0;SAP=2901.93;SAR=1335;SRF=0;SRP=11781.1;SRR=5424;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:468:14:500:-37.1383,0,-34.3318	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.803	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/0:119:117,2:117:4200:2:72:0,-28.9858,-371.343	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:109:56,53:56:2004:53:1900:-138.466,0,-147.821	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.291	0/1:54:35,18:35:1252:18:648:-42.3375,0,-96.6707	0/0:162:162,0:162:5800:0:0:0,-48.7669,-522.106	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:90:49,41:49:1751:41:1470:-105.503,0,-130.781	0/1:46:33,13:33:1184:13:460:-27.888,0,-93.0209	0/0:65:65,0:65:2310:0:0:0,-19.5669,-208.16	0/1:47:27,20:27:968:20:716:-50.6193,0,-73.289	0/1:24:17,7:17:612:7:252:-15.8042,0,-48.1887	0/1:76:38,38:38:1368:38:1352:-99.1021,0,-100.543	0/1:147:87,59:87:3132:59:2093:-144.324,0,-237.795	0/1:44:17,27:17:612:27:963:-73.7406,0,-42.1681	0/1:43:25,18:25:892:18:640:-44.985,0,-67.6554	0/0:136:130,6:130:4660:6:216:0,-21.1496,-399.768	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:218:125,92:125:4460:92:3304:-231.895,0,-335.885	0/1:59:40,19:40:1424:19:676:-43.4072,0,-110.695	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:101:57,44:57:2024:44:1568:-111.008,0,-152.029	0/1:104:74,30:74:2652:30:1060:-64.4036,0,-207.619	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:225:224,0:224:8016:0:0:0,-67.4307,-721.101	0/0:114:114,0:114:4064:0:0:0,-34.3174,-365.949	0/1:43:23,20:23:828:20:720:-52.1845,0,-61.8998	.:.:.:.:.:.:.:.	0/1:106:61,45:61:2188:45:1578:-110.397,0,-165.277	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:48:37,11:37:1332:11:392:-21.1706,0,-105.733	0/1:93:57,36:57:2044:36:1292:-88.588,0,-156.236	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:74:49,25:49:1744:25:900:-59.0448,0,-134.968	0/1:59:30,29:30:1076:29:1036:-75.7931,0,-79.3921	0/1:128:76,52:76:2720:52:1830:-126.445,0,-206.512	0/0:105:105,0:105:3756:0:0:0,-31.6081,-338.24	0/0:135:135,0:135:4836:0:0:0,-40.639,-435.394	0/0:248:248,0:248:8865:0:0:0,-74.6554,-797.835	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:66:39,27:39:1400:27:953:-66.2153,0,-106.431	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	1/1:7:0,7:0:0:7:248:-22.6638,-2.10721,0	0/1:6:4,2:4:144:2:57:-3.60713,0,-11.5074	0/1:27:16,10:16:572:10:356:-24.195,0,-43.627	0/0:101:101,0:101:3636:0:0:0,-30.404,-327.443	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0727	0/1:248:118,130:118:4224:130:4652:-344.179,0,-305.685	0/0:113:112,1:112:4020:1:36:0,-30.4181,-358.389	0/1:71:40,31:40:1436:31:1112:-79.0182,0,-108.142	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/1:142:96,46:96:3428:46:1621:-103.43,0,-265.988	0/1:48:11,37:11:392:37:1295:-102.397,0,-21.1706	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/1:45:15,30:15:540:30:1076:-83.6065,0,-35.3902	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/0:114:114,0:114:4061:0:0:0,-34.3174,-365.677	0/1:72:52,20:52:1856:20:708:-42.3701,0,-145.646	0/1:163:87,76:87:3128:76:2720:-195.931,0,-232.677	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:125:123,2:123:4412:2:72:0,-30.792,-390.415	0/0:122:121,1:121:4344:1:32:0,-33.5263,-387.934	0/1:47:22,25:22:780:25:900:-66.1498,0,-56.3746	0/1:79:47,32:47:1684:32:1140:-79.1278,0,-128.066	0/0:132:132,0:132:4694:0:0:0,-39.736,-422.623	0/1:44:18,26:18:648:26:925:-70.3167,0,-45.4066	0/1:53:29,24:29:1040:24:864:-62.128,0,-77.9598	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:21:20,0:20:716:0:0:0,-6.0206,-64.408	0/1:81:47,34:47:1655:34:1216:-85.3631,0,-124.853	0/1:52:19,33:19:680:33:1180:-90.8545,0,-45.8756	0/0:116:116,0:116:4152:0:0:0,-34.9195,-373.862	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094
chr04	10985911	.	T	C	27991.2	PASS	AB=0.506379;ABP=4.17387;AC=47;AF=0.25;AN=188;AO=1677;CIGAR=1X;DP=6608;DPB=6608;DPRA=1.07595;EPP=3635.89;EPPR=10704;GTI=1;LEN=1;MEANALT=1.02;MQM=59.5236;MQMR=59.6556;NS=94;NUMALT=1;ODDS=3.63031;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59749;QR=176230;RO=4928;RPL=1676;RPP=3635.89;RPPR=10704;RPR=1;RUN=1;SAF=0;SAP=3644.57;SAR=1677;SRF=0;SRP=10704;SRR=4928;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:16,9:16:568:9:312:-20.5139,0,-43.9228	0/0:110:110,0:110:3924:0:0:0,-33.1133,-353.354	0/0:107:106,0:106:3796:0:0:0,-31.9092,-341.46	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.008	0/0:99:99,0:99:3531:0:0:0,-29.802,-317.859	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.087	0/1:52:18,34:18:644:34:1208:-93.2814,0,-42.637	0/0:155:154,1:154:5516:1:36:0,-43.0614,-492.922	0/1:101:55,46:55:1952:46:1652:-118.363,0,-145.066	0/0:102:102,0:102:3648:0:0:0,-30.7051,-328.513	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.577	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.744	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.158	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:51:25,26:25:900:26:936:-69.1904,0,-65.9661	0/1:47:27,20:27:968:20:720:-50.9804,0,-73.2843	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.229	0/1:18:5,13:5:180:13:468:-37.0411,0,-11.1288	0/1:32:20,12:20:720:12:432:-29.58,0,-54.7873	0/1:131:73,58:73:2616:58:2056:-145.866,0,-196.243	0/1:132:77,55:77:2751:55:1950:-136,0,-208.087	0/1:62:12,50:12:413:50:1783:-142.03,0,-18.834	0/1:49:25,24:25:892:24:855:-62.5092,0,-65.8459	0/0:40:37,3:37:1320:3:108:0,-1.96603,-109.014	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.863	0/1:250:104,146:104:3709:146:5236:-396.113,0,-258.733	0/1:199:101,98:101:3600:98:3470:-252.581,0,-264.263	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3164	0/1:210:99,111:99:3548:111:3969:-294.104,0,-256.307	0/1:31:14,17:14:500:17:608:-45.7201,0,-36.0042	0/0:61:59,1:59:2108:1:36:0,-14.8232,-186.389	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7591	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0742	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:144:144,0:144:5156:0:0:0,-43.3483,-464.088	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.108	0/1:33:18,15:18:640:15:536:-38.6326,0,-47.9944	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:110:56,54:56:1997:54:1931:-140.928,0,-146.876	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0308	0/1:122:68,54:68:2424:54:1936:-137.79,0,-181.561	0/1:62:36,26:36:1292:26:924:-64.7098,0,-97.8717	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.366	0/1:59:30,29:30:1080:29:1040:-76.1536,0,-79.7507	0/1:88:39,49:39:1396:49:1731:-129.564,0,-99.4227	0/1:129:64,65:64:2292:65:2288:-167.342,0,-167.706	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.199	0/0:111:111,0:111:3969:0:0:0,-33.4143,-357.365	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.443	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0511	0/0:76:76,0:76:2720:0:0:0,-22.8783,-244.987	0/1:19:14,5:14:485:5:172:-10.0984,0,-38.2556	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:107:66,41:66:2356:41:1455:-99.0066,0,-180.084	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:8:4,4:4:144:4:140:-10.536,0,-10.905	0/1:20:9,11:9:320:11:392:-29.5995,0,-23.1218	0/1:57:38,19:38:1368:19:680:-44.364,0,-106.262	0/0:86:82,4:82:2932:4:140:0,-12.944,-251.133	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:132:56,76:56:1975:76:2706:-204.039,0,-138.284	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.181	0/1:73:35,38:35:1252:38:1368:-101.446,0,-90.932	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.162	0/1:157:80,77:80:2864:77:2723:-198.043,0,-210.625	0/1:62:26,36:26:936:36:1276:-96.4508,0,-65.8733	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3747	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.79	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.76	0/1:8:1,7:1:36:7:244:-19.8912,0,-1.19003	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.09	0/1:47:29,18:29:1044:18:648:-44.4929,0,-80.11	0/0:123:123,0:123:4384:0:0:0,-37.0267,-394.492	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.772	0/1:130:63,67:63:2252:67:2393:-176.438,0,-163.809	0/1:115:48,67:48:1686:67:2380:-179.807,0,-117.333	0/1:10:4,6:4:144:6:216:-16.7719,0,-10.3033	0/0:111:110,0:110:3936:0:0:0,-33.1133,-354.156	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.326	0/0:152:152,0:152:5456:0:0:0,-45.7566,-491.126	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.505	0/1:39:20,19:20:712:19:684:-50.1502,0,-52.6655	0/1:78:42,36:42:1512:36:1292:-93.0255,0,-112.882	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.453	0/1:24:17,7:17:600:7:252:-15.5167,0,-47.1045	0/1:70:35,35:35:1256:35:1256:-92.2732,0,-92.2732	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.118	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1167	0/1:57:27,30:27:964:30:1051:-77.6086,0,-69.9043	0/1:61:15,46:15:540:46:1632:-128.574,0,-30.3451	0/0:76:76,0:76:2716:0:0:0,-22.8783,-243.659	0/0:85:85,0:85:3034:0:0:0,-25.5875,-273.276
chr04	10985913	.	A	G	103584	PASS	AB=0.491302;ABP=5.20131;AC=141;AF=0.75;AN=188;AO=4952;CIGAR=1X;DP=6661;DPB=6661;DPRA=71.6129;EPP=10756.1;EPPR=3698.86;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.6492;MQMR=59.4654;NS=94;NUMALT=1;ODDS=2.50461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176755;QR=60952;RO=1706;RPL=4952;RPP=10756.1;RPPR=3698.86;RPR=0;RUN=1;SAF=0;SAP=10756.1;SAR=4952;SRF=0;SRP=3707.54;SRR=1706;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:9,16:9:320:16:564:-43.5613,0,-20.9821	1/1:109:0,109:0:0:109:3904:-351.553,-32.8123,0	1/1:110:0,110:0:0:110:3927:-353.59,-33.1133,0	1/1:107:0,107:0:0:107:3835:-345.319,-32.2102,0	1/1:100:0,99:0:0:99:3509:-315.79,-29.802,0	1/1:53:0,53:0:0:53:1878:-169.269,-15.9546,0	0/1:52:34,18:34:1216:18:648:-42.9983,0,-94.0019	1/1:152:1,151:1:36:151:5411:-483.493,-42.1583,0	0/1:102:47,55:47:1670:55:1972:-146.317,0,-119.551	1/1:102:1,101:1:36:101:3601:-320.683,-27.1068,0	1/1:38:0,38:0:0:38:1335:-120.442,-11.4391,0	1/1:61:0,61:0:0:61:2180:-196.305,-18.3628,0	1/1:42:0,42:0:0:42:1500:-135.28,-12.6433,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:52:27,25:27:959:25:900:-65.6651,0,-70.9186	0/1:46:19,27:19:669:27:964:-73.2248,0,-46.6866	1/1:81:0,81:0:0:81:2896:-260.819,-24.3834,0	0/1:19:14,5:14:504:5:176:-10.4636,0,-39.9785	0/1:34:12,22:12:432:22:779:-59.9702,0,-28.978	0/1:136:59,77:59:2112:77:2748:-206.613,0,-149.318	0/1:134:57,77:57:2040:77:2754:-207.664,0,-143.352	0/1:62:49,13:49:1756:13:468:-23.7958,0,-139.603	0/1:49:25,24:25:884:24:843:-61.4342,0,-65.1179	1/1:40:3,37:3:108:37:1304:-107.578,-1.96603,0	1/1:55:0,55:0:0:55:1950:-175.654,-16.5567,0	0/1:255:149,106:149:5340:106:3785:-264.065,0,-403.963	0/1:199:98,101:98:3500:101:3636:-267.495,0,-255.184	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	0/1:207:111,96:111:3969:96:3444:-247.855,0,-295.005	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.053	1/1:63:1,62:1:36:62:2212:-195.742,-15.3666,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:14:3,11:3:108:11:392:-31.3964,0,-5.86075	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83577,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:144:0,143:0:0:143:5113:-460.008,-43.0473,0	1/1:94:0,94:0:0:94:3334:-300.254,-28.2968,0	0/1:32:13,19:13:459:19:684:-52.2565,0,-32.0029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:110:55,55:55:1959:55:1964:-143.917,0,-143.446	1/1:28:0,28:0:0:28:1000:-90.3099,-8.42884,0	0/1:120:54,66:54:1936:66:2364:-176.664,0,-138.392	0/1:64:27,37:27:949:37:1310:-98.9226,0,-66.4392	1/1:55:0,55:0:0:55:1957:-176.362,-16.5567,0	0/1:60:30,30:30:1067:30:1076:-79.0892,0,-78.2794	0/1:89:51,38:51:1823:38:1343:-94.3695,0,-137.528	0/1:137:69,68:69:2475:68:2417:-176.543,0,-181.666	1/1:118:0,118:0:0:118:4206:-378.709,-35.5215,0	1/1:114:0,114:0:0:114:4079:-367.262,-34.3174,0	1/1:75:0,75:0:0:75:2669:-240.453,-22.5773,0	1/1:17:0,17:0:0:17:608:-55.0497,-5.11751,0	1/1:78:0,78:0:0:78:2788:-251.106,-23.4803,0	0/1:18:5,13:5:171:13:468:-37.0402,0,-10.3069	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:110:42,68:42:1483:68:2423:-185.206,0,-100.622	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:8:4,4:4:144:4:140:-10.5362,0,-10.9044	0/1:21:12,9:12:432:9:312:-22.0937,0,-32.8996	0/1:60:19,41:19:684:41:1472:-114.714,0,-43.8193	1/1:85:4,81:4:144:81:2904:-248.249,-12.2739,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:136:79,57:79:2836:57:2036:-142.568,0,-214.479	1/1:87:0,87:0:0:87:3078:-277.244,-26.1896,0	0/1:73:39,34:39:1400:34:1208:-87.0427,0,-104.319	1/1:64:0,64:0:0:64:2284:-205.803,-19.2659,0	0/1:157:75,81:75:2669:81:2904:-214.326,0,-193.182	0/1:61:35,26:35:1260:26:928:-65.4531,0,-95.3143	1/1:9:0,9:0:0:9:324:-29.4966,-2.70927,0	1/1:57:0,57:0:0:57:2035:-183.413,-17.1587,0	1/1:54:0,54:0:0:54:1940:-174.873,-16.2556,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:34:0,34:0:0:34:1216:-109.73,-10.235,0	0/1:49:21,28:21:756:28:1008:-76.2695,0,-53.5918	1/1:123:0,123:0:0:123:4381:-394.215,-37.0267,0	1/1:90:0,90:0:0:90:3197:-287.938,-27.0927,0	0/1:132:67,65:67:2392:65:2328:-170.043,0,-175.507	0/1:114:68,46:68:2431:46:1641:-113.545,0,-184.686	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7719	1/1:111:0,111:0:0:111:3948:-355.491,-33.4143,0	1/1:104:0,104:0:0:104:3732:-336.053,-31.3071,0	1/1:154:0,154:0:0:154:5502:-495.27,-46.3586,0	1/1:70:0,70:0:0:70:2508:-225.895,-21.0721,0	0/1:40:19,21:19:676:21:752:-55.9627,0,-49.1268	0/1:81:40,41:40:1428:41:1460:-107.306,0,-104.356	1/1:102:0,102:0:0:102:3625:-326.424,-30.7051,0	0/1:24:7,17:7:252:17:608:-47.8273,0,-15.5167	0/1:70:37,33:37:1324:33:1184:-85.7962,0,-98.3818	1/1:44:0,44:0:0:44:1568:-141.398,-13.2453,0	1/1:15:0,15:0:0:15:538:-48.7482,-4.51545,0	0/1:60:29,31:29:1032:31:1112:-82.1858,0,-74.3528	0/1:61:46,15:46:1635:15:517:-28.4448,0,-128.844	1/1:73:0,73:0:0:73:2588:-233.162,-21.9752,0	1/1:86:0,86:0:0:86:3088:-278.121,-25.8886,0
chr04	10986112	.	CG	CC	65331.3	PASS	AB=0.446664;ABP=57.445;AC=141;AF=0.758065;AN=186;AO=3175;CIGAR=1M1X;DP=4414;DPB=4414;DPRA=0;EPP=6880.07;EPPR=2656.55;GTI=1;LEN=1;MEANALT=1.15054;MQM=59.9902;MQMR=59.9975;NS=93;NUMALT=1;ODDS=0.63339;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112414;QR=42785;RO=1222;RPL=2;RPP=6880.07;RPPR=2656.55;RPR=3173;RUN=1;SAF=0;SAP=6897.44;SAR=3175;SRF=0;SRP=2656.55;SRR=1222;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:5,9:5:158:9:305:-23.5628,0,-10.3166	1/1:54:0,54:0:0:54:1888:-170.195,-16.2556,0	1/1:64:0,63:0:0:63:2238:-201.323,-18.9649,0	1/1:66:1,65:1:36:65:2310:-204.562,-16.2697,0	1/1:39:0,36:0:0:36:1295:-116.534,-10.8371,0	1/1:29:0,29:0:0:29:1033:-93.2832,-8.72987,0	0/1:50:23,27:23:807:27:972:-72.7464,0,-57.8963	1/1:61:3,58:3:108:58:2064:-175.956,-8.28766,0	0/1:63:42,21:42:1491:21:752:-49.0414,0,-115.519	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:37:0,37:0:0:37:1281:-115.586,-11.1381,0	1/1:42:0,42:0:0:42:1482:-133.673,-12.6433,0	1/1:42:0,42:0:0:42:1499:-135.204,-12.6433,0	1/1:32:0,31:0:0:31:1043:-93.858,-9.33193,0	0/1:28:15,13:15:531:13:464:-33.6687,0,-39.6939	0/1:37:17,20:17:592:20:699:-52.0943,0,-42.467	1/1:34:0,34:0:0:34:1189:-107.313,-10.235,0	0/1:21:12,9:12:430:9:324:-23.1842,0,-32.7185	0/1:23:13,10:13:446:10:356:-25.4576,0,-33.5428	0/1:41:13,28:13:466:28:1008:-78.6941,0,-29.9365	0/1:82:37,45:37:1287:45:1604:-119.966,0,-91.4441	0/1:57:40,17:40:1390:17:608:-37.8933,0,-108.236	0/1:34:19,15:19:651:15:536:-38.3398,0,-48.6744	1/1:53:2,50:2:70:50:1787:-154.462,-9.36274,0	1/1:47:0,47:0:0:47:1666:-150.226,-14.1484,0	0/1:169:114,55:114:3998:55:1955:-125.351,0,-309.138	0/1:93:46,47:46:1625:47:1669:-122.5,0,-118.542	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:139:75,62:75:2617:62:2215:-158.033,0,-194.195	0/1:96:54,42:54:1903:42:1504:-106.756,0,-142.647	1/1:69:0,69:0:0:69:2430:-218.956,-20.7711,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:7:4,3:4:144:3:100:-7.22323,0,-11.2064	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	1/1:102:0,102:0:0:102:3593:-323.577,-30.7051,0	1/1:84:0,84:0:0:84:2989:-269.242,-25.2865,0	0/1:47:28,19:28:974:19:675:-46.9285,0,-73.8219	0/1:3:1,2:1:31:2:72:-5.93363,0,-2.19636	0/1:57:32,25:32:1100:25:890:-63.2608,0,-82.1436	1/1:23:0,23:0:0:23:810:-73.219,-6.92369,0	0/1:66:37,29:37:1299:29:1032:-73.3255,0,-97.3402	0/1:46:26,20:26:914:20:716:-50.9203,0,-68.7292	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	0/1:82:42,40:42:1493:40:1417:-103.143,0,-109.98	0/1:43:22,20:22:786:20:711:-51.3223,0,-58.0712	0/1:94:52,41:52:1797:41:1459:-103.25,0,-133.651	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	1/1:49:0,49:0:0:49:1727:-155.71,-14.7505,0	1/1:87:0,84:0:0:84:2994:-269.331,-25.2865,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	0/1:19:11,8:11:376:8:288:-20.5478,0,-28.4487	1/1:19:0,18:0:0:18:639:-57.4787,-5.41854,0	0/1:47:28,19:28:979:19:661:-45.6632,0,-74.273	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	0/1:8:6,2:6:201:2:72:-4.42848,0,-16.0094	0/1:5:3,2:3:108:2:63:-4.478,0,-8.57002	0/1:36:19,17:19:672:17:588:-42.4051,0,-49.9694	1/1:51:0,51:0:0:51:1800:-162.28,-15.3525,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:112:57,55:57:2020:55:1964:-143.32,0,-148.356	1/1:106:1,105:1:36:105:3729:-332.213,-28.3109,0	0/1:39:19,20:19:684:20:712:-52.6665,0,-50.1502	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:60:34,26:34:1177:26:918:-64.8735,0,-88.1692	0/1:62:36,26:36:1269:26:884:-61.202,0,-95.8471	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:41:0,40:0:0:40:1411:-126.927,-12.0412,0	1/1:45:0,45:0:0:45:1581:-142.578,-13.5464,0	0/1:18:8,10:8:266:10:352:-26.5997,0,-18.8443	1/1:82:0,82:0:0:82:2868:-258.358,-24.6845,0	0/1:33:22,11:22:781:11:396:-26.0488,0,-60.6781	1/1:75:0,75:0:0:75:2649:-238.655,-22.5773,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	0/1:80:47,33:47:1658:33:1158:-80.4426,0,-125.424	0/1:42:20,22:20:703:22:775:-57.4279,0,-50.9497	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.5366	1/1:53:0,53:0:0:53:1877:-169.207,-15.9546,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:97:0,97:0:0:97:3450:-310.714,-29.1999,0	1/1:58:1,56:1:36:56:1959:-172.984,-13.9203,0	0/1:24:9,15:9:324:15:536:-41.3501,0,-22.2811	0/1:43:21,22:21:725:22:773:-56.9452,0,-52.6242	1/1:75:0,75:0:0:75:2609:-235.058,-22.5773,0	0/1:18:11,6:11:391:6:212:-13.9484,0,-30.0523	0/1:52:31,21:31:1042:21:735:-50.8178,0,-78.4259	1/1:29:0,29:0:0:29:1018:-91.9304,-8.72987,0	1/1:12:0,12:0:0:12:417:-37.8525,-3.61236,0	0/1:55:29,26:29:1002:26:900:-64.7547,0,-73.931	0/1:45:28,17:28:979:17:612:-41.8671,0,-74.8753	1/1:58:0,58:0:0:58:2059:-185.579,-17.4597,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0
chr04	11292638	.	A	G	146826	PASS	AB=0.49646;ABP=3.51764;AC=141;AF=0.758065;AN=186;AO=7165;CIGAR=1X;DP=9542;DPB=9542;DPRA=12.9538;EPP=15552.9;EPPR=5158.09;GTI=1;LEN=1;MEANALT=1.03261;MQM=46.5784;MQMR=59.9431;NS=93;NUMALT=1;ODDS=2.39156;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=254599;QR=84654;RO=2374;RPL=0;RPP=15561.6;RPPR=5158.09;RPR=7165;RUN=1;SAF=1;SAP=15552.9;SAR=7164;SRF=0;SRP=5158.09;SRR=2374;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:21,37:21:756:37:1306:-99.3972,0,-50.879	1/1:137:0,137:0:0:137:4823:-428.971,-41.2411,0	1/1:98:0,98:0:0:98:3480:-309.843,-29.5009,0	1/1:179:0,179:0:0:179:6335:-563.181,-53.8844,0	1/1:80:5,75:5:180:75:2655:-219.468,-7.53034,0	1/1:76:0,76:0:0:76:2707:-240.606,-22.8783,0	0/1:98:41,57:41:1445:57:2040:-152.243,0,-100.836	1/1:137:1,136:1:36:136:4854:-429.427,-37.6428,0	0/1:160:67,93:67:2380:93:3299:-245.974,0,-166.073	1/1:131:0,131:0:0:131:4671:-416.174,-39.4349,0	1/1:114:0,114:0:0:114:4055:-359.446,-34.3174,0	1/1:69:1,68:1:36:68:2417:-211.471,-17.1728,0	1/1:70:0,69:0:0:69:2458:-219.243,-20.7711,0	1/1:88:0,88:0:0:88:3114:-278.069,-26.4906,0	0/1:80:42,38:42:1512:38:1360:-97.398,0,-112.288	0/1:53:31,22:31:1116:22:792:-55.025,0,-84.7971	1/1:122:0,122:0:0:122:4323:-385.037,-36.7257,0	0/1:60:30,30:30:1068:30:1059:-76.0133,0,-78.3703	0/1:70:35,35:35:1248:35:1247:-90.5093,0,-91.5528	0/1:142:84,58:84:3009:58:2067:-141.851,0,-228.291	0/1:165:82,83:82:2915:83:2966:-214.504,0,-212.911	0/1:56:29,27:29:1044:27:972:-69.8021,0,-77.4171	0/1:107:41,66:41:1472:66:2328:-175.714,0,-100.566	1/1:165:8,157:8:288:157:5576:-469.771,-23.4025,0	1/1:45:0,45:0:0:45:1569:-139.481,-13.5464,0	0/1:373:191,182:191:6827:182:6464:-464.222,0,-502.214	0/1:172:82,90:82:2936:90:3203:-233.959,0,-212.697	1/1:50:0,50:0:0:50:1788:-158.851,-15.0515,0	0/1:171:82,89:82:2935:89:3140:-228.167,0,-212.908	0/1:171:95,76:95:3393:76:2709:-189.531,0,-254.108	1/1:166:0,165:0:0:165:5881:-522.245,-49.67,0	0/1:7:2,5:2:72:5:176:-13.9502,0,-4.72951	0/1:10:7,3:7:237:3:108:-6.97677,0,-18.6488	1/1:7:0,7:0:0:7:248:-22.4679,-2.10721,0	1/1:10:0,10:0:0:10:356:-31.7668,-3.0103,0	1/1:7:0,7:0:0:7:243:-22.0311,-2.10721,0	1/1:225:0,225:0:0:225:7979:-710.742,-67.7318,0	1/1:190:0,190:0:0:190:6731:-600.292,-57.1957,0	0/1:71:29,42:29:1032:42:1494:-111.891,0,-71.8203	0/1:5:2,3:2:72:3:108:-8.48192,0,-5.33157	0/1:158:91,67:91:3252:67:2393:-165.837,0,-245.31	1/1:58:0,58:0:0:58:2071:-185.073,-17.4597,0	0/1:103:64,39:64:2291:39:1386:-91.6004,0,-175.445	0/1:132:71,61:71:2516:61:2132:-150.387,0,-186.953	1/1:64:0,64:0:0:64:2227:-197.683,-19.2659,0	0/1:132:66,66:66:2331:66:2367:-171.242,0,-170.308	0/1:133:59,74:59:2096:74:2623:-192.416,0,-148.873	0/1:145:61,84:61:2170:84:3020:-224.896,0,-151.916	1/1:74:0,74:0:0:74:2639:-233.296,-22.2762,0	1/1:136:0,136:0:0:136:4852:-432.174,-40.9401,0	1/1:85:0,85:0:0:85:3035:-270.481,-25.5876,0	1/1:13:0,13:0:0:13:468:-42.0884,-3.91339,0	1/1:92:0,92:0:0:92:3267:-291.147,-27.6948,0	0/1:38:15,23:15:531:23:824:-62.4066,0,-36.6828	1/1:6:0,6:0:0:6:212:-19.2688,-1.80618,0	0/1:97:42,55:42:1489:55:1959:-145.557,0,-105.103	1/1:44:0,44:0:0:44:1535:-136.871,-13.2453,0	1/1:3:0,3:0:0:3:108:-9.98707,-0.90309,0	0/1:36:24,12:24:864:12:432:-27.5759,0,-67.2455	0/1:114:67,47:67:2396:47:1679:-115.759,0,-181.58	1/1:127:0,127:0:0:127:4547:-404.469,-38.2308,0	.:.:.:.:.:.:.:.	0/1:203:114,89:114:4100:89:3188:-222.655,0,-308.074	1/1:212:4,208:4:140:208:7431:-646.378,-50.8738,0	0/1:117:50,67:50:1773:67:2335:-173.081,0,-124.631	1/1:72:0,72:0:0:72:2563:-228.161,-21.6742,0	0/1:212:101,111:101:3601:111:3933:-286.439,0,-260.477	0/1:66:44,22:44:1569:22:788:-50.3042,0,-121.632	1/1:44:0,44:0:0:44:1560:-138.999,-13.2453,0	1/1:56:0,56:0:0:56:2016:-179.281,-16.8577,0	1/1:108:0,108:0:0:108:3822:-339.675,-32.5112,0	0/1:50:23,27:23:824:27:968:-70.9497,0,-59.4318	1/1:72:0,72:0:0:72:2548:-225.923,-21.6742,0	0/1:57:40,17:40:1431:17:608:-37.4257,0,-111.928	1/1:240:0,240:0:0:240:8526:-759.495,-72.2472,0	1/1:127:0,127:0:0:127:4535:-404.819,-38.2308,0	0/1:104:39,65:39:1388:65:2288:-171.42,0,-93.9118	0/1:157:86,71:86:3057:71:2526:-178.027,0,-228.097	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	1/1:82:0,82:0:0:82:2918:-260.579,-24.6845,0	1/1:69:0,69:0:0:69:2430:-215.883,-20.7711,0	1/1:182:0,182:0:0:182:6442:-574.498,-54.7875,0	1/1:100:0,100:0:0:100:3571:-317.555,-30.103,0	0/1:84:40,44:40:1440:44:1559:-112.932,0,-104.611	0/1:124:64,60:64:2252:60:2145:-153.048,0,-165.591	1/1:228:0,227:0:0:227:8069:-715.059,-68.3338,0	0/1:43:17,26:17:612:26:907:-68.3697,0,-42.4691	0/1:90:54,36:54:1926:36:1283:-87.3223,0,-146.523	1/1:91:0,91:0:0:91:3244:-287.628,-27.3937,0	1/1:97:0,97:0:0:97:3466:-307.806,-29.1999,0	0/1:141:63,78:63:2241:78:2788:-205.773,0,-159.507	0/1:96:59,37:59:2076:37:1324:-89.176,0,-158.21	1/1:118:0,118:0:0:118:4169:-369.973,-35.5215,0	1/1:107:0,107:0:0:107:3772:-336.007,-32.2102,0
chr04	12285659	.	TGGA	AGGT,TGGG	185767	PASS	AB=0.532182,0.464032;ABP=41.026,50.497;AC=143,45;AF=0.760638,0.239362;AN=188;AO=6804,1970;CIGAR=1X2M1X,3M1X;DP=8806;DPB=8807;DPRA=0,1.12281;EPP=14777.7,4280.81;EPPR=5.18177;GTI=2;LEN=4,1;MEANALT=1.84043,2.30612;MQM=59.8974,59.9645;MQMR=60;NS=94;NUMALT=2;ODDS=0.573974;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=136,0;PQR=0;PRO=0;QA=239104,70310;QR=36;RO=1;RPL=6804,1970;RPP=14777.7,4280.81;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=14777.7,4280.81;SAR=6804,1970;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:18:0,9,9:0:0:9,9:317,324:-52.596,-26.7966,-24.0873,-26.1553,0,-23.4461	1/1:208:0,207,0:0:0:207,0:7218,0:-649.37,-62.3132,0,-649.37,-62.3132,-649.37	1/1:88:0,88,0:0:0:88,0:3084,0:-277.703,-26.4906,0,-277.703,-26.4906,-277.703	1/1:186:0,185,1:0:0:185,1:6486,36:-583.469,-55.6906,0,-580.531,-52.3933,-580.23	1/1:84:0,84,0:0:0:84,0:2957,0:-266.366,-25.2865,0,-266.366,-25.2865,-266.366	1/1:50:0,50,0:0:0:50,0:1764,0:-159.041,-15.0515,0,-159.041,-15.0515,-159.041	1/2:137:0,73,64:0:0:73,64:2572,2296:-397.034,-187.635,-165.66,-209.754,0,-190.488	1/1:138:0,138,0:0:0:138,0:4781,0:-430.46,-41.5421,0,-430.46,-41.5421,-430.46	1/2:73:0,32,41:0:0:32,41:1150,1476:-214.612,-120.794,-111.161,-94.1772,0,-81.835	1/1:100:0,98,0:0:0:98,0:3439,0:-309.379,-29.5009,0,-309.379,-29.5009,-309.379	1/1:59:0,59,0:0:0:59,0:2072,0:-186.75,-17.7608,0,-186.75,-17.7608,-186.75	1/1:69:0,68,0:0:0:68,0:2415,0:-217.304,-20.47,0,-217.304,-20.47,-217.304	1/1:75:0,75,0:0:0:75,0:2628,0:-236.768,-22.5773,0,-236.768,-22.5773,-236.768	1/1:78:0,78,0:0:0:78,0:2748,0:-247.202,-23.4803,0,-247.202,-23.4803,-247.202	1/2:64:0,34,30:0:0:34,30:1198,1072:-185.296,-87.7616,-77.5265,-97.8888,0,-88.8579	1/2:77:0,37,40:0:0:37,40:1291,1428:-221.73,-116.776,-105.638,-105.306,0,-93.2649	1/1:87:0,86,0:0:0:86,0:2981,0:-268.16,-25.8886,0,-268.16,-25.8886,-268.16	1/2:66:0,39,27:0:0:39,27:1378,972:-191.89,-79.6701,-67.9299,-112.577,0,-104.45	1/2:48:0,27,20:0:0:27,20:962,716:-136.799,-58.3874,-50.2596,-78.4091,0,-72.3885	1/2:195:0,110,84:0:0:110,84:3839,3008:-557.524,-245.305,-212.192,-312.213,0,-286.926	1/2:122:0,57,65:0:0:57,65:2000,2315:-351.709,-189.044,-171.885,-163.018,0,-143.451	1/2:49:0,14,34:0:0:14,34:500,1204:-138.837,-98.0712,-93.8567,-40.7624,0,-30.5274	1/2:48:0,31,17:0:0:31,17:1099,608:-139.467,-49.9345,-40.6026,-89.8884,0,-84.7709	1/2:52:0,47,5:0:0:47,5:1612,180:-145.905,-15.0469,-0.898505,-131.216,0,-129.711	1/1:48:0,48,0:0:0:48,0:1687,0:-152.111,-14.4494,0,-152.111,-14.4494,-152.111	1/2:270:0,140,129:0:0:140,129:4938,4570:-774.356,-372.276,-330.132,-402.073,0,-363.24	1/2:192:0,100,92:0:0:100,92:3486,3290:-552.118,-268.618,-238.515,-283.852,0,-256.158	1/1:34:0,34,0:0:0:34,0:1210,0:-109.207,-10.235,0,-109.207,-10.235,-109.207	1/2:242:0,131,111:0:0:131,111:4589,3945:-695.223,-321.828,-282.394,-373.748,0,-340.333	1/2:176:0,97,79:0:0:97,79:3413,2828:-508.798,-230.978,-201.778,-278.176,0,-254.394	1/1:103:0,103,0:0:0:103,0:3603,0:-324.479,-31.0061,0,-324.479,-31.0061,-324.479	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/2:7:0,4,3:0:0:4,3:127,108:-19.3701,-9.17208,-7.96796,-10.5396,0,-9.63653	1/1:8:0,8,0:0:0:8,0:256,0:-23.3535,-2.40824,0,-23.3535,-2.40824,-23.3535	1/1:9:0,9,0:0:0:9,0:320,0:-29.1427,-2.70927,0,-29.1427,-2.70927,-29.1427	1/1:20:0,20,0:0:0:20,0:701,0:-63.4132,-6.0206,0,-63.4132,-6.0206,-63.4132	1/1:259:0,259,0:0:0:259,0:9141,0:-822.201,-77.9668,0,-822.201,-77.9668,-822.201	1/1:91:0,91,0:0:0:91,0:3181,0:-286.429,-27.3937,0,-286.429,-27.3937,-286.429	1/2:82:0,49,32:0:0:49,32:1711,1152:-233.165,-93.997,-79.2465,-139.164,0,-129.531	1/2:3:0,2,1:0:0:2,1:66,36:-8.61329,-3.29724,-2.69518,-5.66589,0,-5.36486	1/2:213:0,112,99:0:0:112,99:3951,3552:-611.469,-289.765,-256.049,-321.739,0,-291.937	1/1:52:0,52,0:0:0:52,0:1849,0:-166.689,-15.6536,0,-166.689,-15.6536,-166.689	1/2:91:0,43,48:0:0:43,48:1497,1708:-261.281,-139.556,-126.612,-122.076,0,-107.627	1/2:60:0,32,28:0:0:32,28:1141,1000:-174.896,-81.8865,-72.2536,-93.3664,0,-84.9376	1/1:72:0,72,0:0:0:72,0:2509,0:-226.062,-21.6742,0,-226.062,-21.6742,-226.062	1/2:52:0,20,32:0:0:20,32:712,1136:-150.947,-92.9159,-86.8953,-58.3863,0,-48.7534	1/2:120:0,71,48:0:0:71,48:2498,1700:-341.817,-138.477,-117.104,-203.333,0,-188.884	1/2:177:0,88,89:0:0:88,89:3079,3172:-509.392,-258.914,-232.423,-250.831,0,-224.04	1/1:116:0,116,0:0:0:116,0:4070,0:-366.491,-34.9195,0,-366.491,-34.9195,-366.491	1/1:180:0,179,0:0:0:179,0:6336,0:-569.979,-53.8844,0,-569.979,-53.8844,-569.979	1/1:112:0,112,0:0:0:112,0:3946,0:-355.334,-33.7154,0,-355.334,-33.7154,-355.334	1/1:10:0,10,0:0:0:10,0:349,0:-31.7434,-3.0103,0,-31.7434,-3.0103,-31.7434	1/1:105:0,104,0:0:0:104,0:3643,0:-327.681,-31.3071,0,-327.681,-31.3071,-327.681	1/2:47:0,24,23:0:0:24,23:839,824:-135.809,-67.5596,-60.3349,-68.603,0,-61.6793	1/1:31:0,31,0:0:0:31,0:1093,0:-98.6797,-9.33193,0,-98.6797,-9.33193,-98.6797	1/2:123:0,71,52:0:0:71,52:2455,1856:-351.144,-151.666,-130.293,-199.83,0,-184.177	1/1:26:0,26,0:0:0:26,0:887,0:-80.1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chr04	12631516	.	GGT	CGT,CGC	351672	PASS	AB=0.51412,0.48244;ABP=12.5767,17.8049;AC=143,45;AF=0.760638,0.239362;AN=188;AO=10111,2691;CIGAR=1X2M,1X1M1X;DP=12836;DPB=12844;DPRA=19.7066,1.0074;EPP=21958.8,5837.76;EPPR=16.0391;GTI=2;LEN=1,3;MEANALT=1.84946,2.31481;MQM=59.853,57.1787;MQMR=60;NS=94;NUMALT=2;ODDS=10.1805;PAIRED=0,0;PAIREDR=0;PAO=8.5,8.5;PQA=300,300;PQR=0;PRO=7;QA=359717,94184;QR=150;RO=6;RPL=5272,1489;RPP=43.2761,69.477;RPPR=16.0391;RPR=4839,1202;RUN=1,1;SAF=5272,1490;SAP=43.2761,70.4066;SAR=4839,1201;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,18,14:0:0:18,14:639,478:-91.133,-39.0602,-33.6417,-52.4197,0,-48.2053	1/1:211:0,209,1:0:0:209,1:7394,36:-665.139,-62.9153,0,-662.202,-59.9679,-661.901	1/1:269:0,268,1:0:0:268,1:9552,36:-859.193,-80.676,0,-856.264,-77.3878,-855.963	1/1:283:0,282,0:0:0:282,0:9966,0:-896.558,-84.8905,0,-896.558,-84.8905,-896.558	1/1:55:0,55,0:0:0:55,0:1972,0:-177.746,-16.5567,0,-177.746,-16.5567,-177.746	1/1:46:0,46,0:0:0:46,0:1656,0:-149.312,-13.8474,0,-149.312,-13.8474,-149.312	1/2:154:0,97,57:0:0:97,57:3453,2000:-444.528,-163.103,-133.903,-281.778,0,-264.619	1/1:210:1,209,0:1:21:209,0:7390,0:-662.832,-61.1164,0,-663.133,-62.9153,-664.722	1/2:125:0,70,55:0:0:70,55:2511,1944:-362.997,-158.373,-137.3,-204.979,0,-188.423	1/1:169:0,169,0:0:0:169,0:6030,0:-542.788,-50.8741,0,-542.788,-50.8741,-542.788	1/1:96:1,95,0:1:28:95,0:3382,0:-301.793,-26.0992,0,-302.094,-28.5979,-304.312	1/1:168:0,167,0:0:0:167,0:5914,0:-532.007,-50.272,0,-532.007,-50.272,-532.007	1/1:137:0,137,0:0:0:137,0:4867,0:-438.11,-41.2411,0,-438.11,-41.2411,-438.11	1/1:115:0,115,0:0:0:115,0:4052,0:-364.79,-34.6185,0,-364.79,-34.6185,-364.79	1/2:169:0,85,84:0:0:85,84:3018,2954:-486.381,-240.531,-214.943,-246.203,0,-220.916	1/2:124:0,64,58:0:0:64,58:2284,2036:-351.691,-165.491,-146.225,-186.298,0,-168.839	1/1:92:0,91,1:0:0:91,1:3204,33:-287.951,-27.3937,0,-285.283,-24.3956,-284.982	1/2:98:0,48,50:0:0:48,50:1683,1756:-280.069,-143.126,-128.677,-137.293,0,-122.242	1/2:83:0,55,28:0:0:55,28:1961,1000:-241.227,-81.3865,-64.8299,-160.196,0,-151.767	1/2:164:0,86,76:0:0:86,76:3080,2689:-470.131,-218.947,-193.059,-251.151,0,-228.272	1/2:203:1,105,94:1:27:105,94:3733,3305:-570.717,-266.839,-237.358,-302.105,0,-275.936	1/2:60:0,16,44:0:0:16,44:564,1562:-173.192,-127.272,-122.455,-46.2174,0,-32.9721	1/2:59:0,27,32:0:0:27,32:972,1125:-171.196,-91.8844,-83.7566,-79.6678,0,-70.0348	1/1:118:0,113,5:0:0:113,5:3999,164:-359.766,-34.0164,0,-346.517,-20.4383,-345.012	1/1:97:0,97,0:0:0:97,0:3468,0:-312.323,-29.1999,0,-312.323,-29.1999,-312.323	1/2:331:0,176,154:0:0:176,154:6248,5327:-941.802,-432.72,-379.739,-509.073,0,-462.714	1/2:301:1,121,178:1:27:121,178:4301,6228:-853.118,-502.958,-468.662,-348.347,0,-296.892	1/1:78:0,78,0:0:0:78,0:2786,0:-250.981,-23.4803,0,-250.981,-23.4803,-250.981	1/2:256:0,138,118:0:0:138,118:4893,4140:-735.645,-337.02,-295.477,-398.978,0,-363.457	1/2:150:0,86,63:0:0:86,63:3005,2178:-421.266,-176.819,-150.93,-244.598,0,-225.633	1/1:141:0,141,0:0:0:141,0:5039,0:-453.654,-42.4452,0,-453.654,-42.4452,-453.654	1/2:11:0,6,5:0:0:6,5:208,167:-30.7381,-13.8245,-12.0183,-17.2529,0,-15.7478	1/2:24:0,14,10:0:0:14,10:504,360:-70.8117,-29.6876,-25.4732,-41.4837,0,-38.4734	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:24:1,23,0:1:26:23,0:807,0:-70.3402,-4.62489,0,-70.6413,-6.92369,-72.6763	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1443,-9.0309,0,-97.1443,-9.0309,-97.1443	1/1:394:0,394,0:0:0:394,0:14031,0:-1262.38,-118.606,0,-1262.38,-118.606,-1262.38	1/1:128:0,127,0:0:0:127,0:4500,0:-404.955,-38.2308,0,-404.955,-38.2308,-404.955	1/2:108:0,44,63:0:0:44,63:1563,2181:-304.173,-176.809,-163.563,-127.497,0,-108.532	2/2:7:0,0,7:0:0:0,7:0,249:-22.7275,-22.7275,-22.7275,-2.10721,-2.10721,0	1/2:161:0,99,61:0:0:99,61:3548,2123:-461.43,-172.105,-142.303,-289.404,0,-271.041	1/1:57:0,57,0:0:0:57,0:2031,0:-183.057,-17.1587,0,-183.057,-17.1587,-183.057	1/2:107:0,57,50:0:0:57,50:2017,1754:-307.269,-142.996,-125.838,-164.624,0,-149.573	1/2:142:0,67,75:0:0:67,75:2400,2626:-409.575,-213.844,-193.675,-196.085,0,-173.508	1/1:137:0,136,0:0:0:136,0:4832,0:-434.612,-40.9401,0,-434.612,-40.9401,-434.612	1/2:93:0,40,53:0:0:40,53:1436,1857:-268.562,-151.42,-139.379,-117.496,0,-101.542	1/2:123:0,63,60:0:0:63,60:2224,2075:-349.658,-168.566,-149.601,-181.382,0,-163.32	1/2:227:0,133,93:0:0:133,93:4741,3236:-649.064,-262.636,-222.599,-386.508,0,-358.512	1/1:193:0,193,0:0:0:193,0:6911,0:-622.045,-58.0988,0,-622.045,-58.0988,-622.045	1/1:289:1,288,0:1:21:288,0:10282,0:-923.197,-84.8977,0,-923.498,-86.6966,-925.087	1/1:168:0,168,0:0:0:168,0:5974,0:-537.764,-50.573,0,-537.764,-50.573,-537.764	1/1:8:0,8,0:0:0:8,0:288,0:-26.265,-2.40824,0,-26.265,-2.40824,-26.265	1/1:159:0,158,1:0:0:158,1:5663,34:-509.441,-47.5627,0,-506.712,-44.497,-506.411	1/2:40:0,20,20:0:0:20,20:708,706:-115.507,-57.8351,-51.8145,-58.025,0,-52.0044	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:201:0,114,86:0:0:114,86:4057,3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chr04	12631526	.	A	G	51296.8	PASS	AB=0.488999;ABP=7.88347;AC=45;AF=0.241935;AN=186;AO=2288;CIGAR=1X;DP=10717;DPB=10717;DPRA=1.12716;EPP=7.3988;EPPR=412.152;GTI=2;LEN=1;MEANALT=1.0566;MQM=56.7203;MQMR=59.8211;NS=93;NUMALT=1;ODDS=8.08535;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81242;QR=297164;RO=8426;RPL=2279;RPP=4893.47;RPPR=17911.1;RPR=9;RUN=1;SAF=1103;SAP=9.39185;SAR=1185;SRF=3538;SRP=472.688;SRR=4888;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:12,7:12:428:7:227:-14.9816,0,-33.1392	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.785	0/0:216:215,1:215:7660:1:36:0,-61.4332,-685.743	0/0:267:267,0:267:9383:0:0:0,-80.375,-843.766	0/0:48:48,0:48:1696:0:0:0,-14.4494,-152.917	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3198	0/1:145:90,55:90:3146:55:1956:-132.65,0,-239.716	0/0:72:72,0:72:2576:0:0:0,-21.6742,-231.864	0/1:53:37,15:37:1320:15:540:-32.6183,0,-102.899	0/0:154:154,0:154:5374:0:0:0,-46.3586,-483.686	0/0:90:90,0:90:3176:0:0:0,-27.0927,-286.059	0/0:109:109,0:109:3886:0:0:0,-32.8123,-349.918	0/0:69:69,0:69:2433:0:0:0,-20.7711,-219.024	0/0:109:109,0:109:3865:0:0:0,-32.8123,-348.027	0/1:162:80,82:80:2832:82:2904:-212.587,0,-206.344	0/1:117:57,60:57:2040:60:2136:-156.199,0,-148.614	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.976	0/1:37:18,19:18:648:19:676:-49.8688,0,-47.5032	0/1:45:30,15:30:1076:15:536:-34.5238,0,-83.596	0/1:157:81,76:81:2844:76:2703:-196.213,0,-208.934	0/1:182:90,92:90:3176:92:3300:-242.153,0,-231.254	0/1:59:16,42:16:546:42:1491:-116.525,0,-31.6434	0/1:59:28,31:28:987:31:1112:-82.5875,0,-71.3776	0/0:102:97,5:97:3416:5:180:0,-14.153,-291.102	0/0:87:87,0:87:3086:0:0:0,-26.1896,-277.96	0/1:311:160,151:160:5549:151:5369:-389.317,0,-405.925	0/1:285:113,171:113:4019:171:6103:-461.92,0,-276.17	0/0:64:64,0:64:2261:0:0:0,-19.2659,-203.752	0/1:244:129,115:129:4530:115:4037:-289.731,0,-334.418	0/1:140:79,61:79:2820:61:2176:-153.615,0,-211.896	0/0:140:140,0:140:4894:0:0:0,-42.1442,-440.616	0/1:11:6,5:6:216:5:176:-12.7367,0,-16.4792	0/1:24:14,10:14:482:10:360:-25.4732,0,-36.4813	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:23:23,0:23:808:0:0:0,-6.92369,-73.031	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.8503	0/0:372:372,0:372:13122:0:0:0,-111.983,-1180.8	0/0:115:115,0:115:4068:0:0:0,-34.6184,-366.307	0/1:51:19,32:19:654:32:1152:-88.0064,0,-43.825	1/1:7:0,7:0:0:7:252:-23.001,-2.10721,0	0/1:145:87,58:87:3084:58:2064:-141.425,0,-234.087	0/0:53:53,0:53:1880:0:0:0,-15.9546,-169.479	0/1:100:50,50:50:1780:50:1784:-130.641,0,-130.361	0/1:139:65,74:65:2278:74:2622:-194.187,0,-163.436	0/0:127:127,0:127:4443:0:0:0,-38.2308,-399.951	0/1:89:36,53:36:1279:53:1895:-143.955,0,-88.6208	0/1:80:41,39:41:1472:39:1387:-100.612,0,-108.677	0/1:210:120,90:120:4231:90:3141:-218.914,0,-317.738	0/0:181:181,0:181:6441:0:0:0,-54.4864,-579.768	0/0:271:271,0:271:9525:0:0:0,-81.5791,-857.213	0/0:164:164,0:164:5767:0:0:0,-49.3689,-519.148	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5369	0/0:81:81,0:81:2887:0:0:0,-24.3834,-260.012	0/1:36:18,18:18:623:18:639:-46.9914,0,-45.556	.:.:.:.:.:.:.:.	0/1:196:114,82:114:4033:82:2948:-205.81,0,-304.149	0/0:38:38,0:38:1325:0:0:0,-11.4391,-119.545	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:9:8,1:8:284:1:36:-0.887999,0,-23.1941	0/1:116:67,49:67:2380:49:1740:-121.536,0,-179.539	0/0:125:125,0:125:4407:0:0:0,-37.6287,-396.795	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5613	0/1:189:107,82:107:3754:82:2918:-205.778,0,-281.109	0/0:308:307,1:307:10703:1:36:0,-89.119,-959.605	0/1:95:54,41:54:1900:41:1452:-102.156,0,-142.68	0/0:82:82,0:82:2897:0:0:0,-24.6845,-260.96	0/1:175:91,84:91:3243:84:3003:-217.379,0,-239.312	0/1:138:51,87:51:1812:87:3094:-236.013,0,-121.819	0/0:84:83,1:83:2927:1:36:0,-21.6933,-260.03	0/0:81:81,0:81:2882:0:0:0,-24.3834,-259.568	0/0:169:168,1:168:5820:1:36:0,-47.2758,-519.837	0/1:23:10,13:10:356:13:459:-34.6313,0,-25.4552	0/0:56:56,0:56:1972:0:0:0,-16.8577,-177.69	0/1:35:27,8:27:963:8:288:-15.6653,0,-76.4417	0/0:255:255,0:255:8999:0:0:0,-76.7626,-809.86	0/0:211:210,1:210:7368:1:36:0,-59.9191,-659.569	0/1:14:4,10:4:144:10:360:-28.3083,0,-9.0992	0/1:112:71,41:71:2535:41:1468:-97.9981,0,-194.685	0/1:22:8,14:8:284:14:488:-37.5213,0,-19.2807	0/0:209:207,2:207:7356:2:72:0,-56.0834,-655.126	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.319	0/0:291:291,0:291:10238:0:0:0,-87.5997,-921.34	0/0:162:162,0:162:5629:0:0:0,-48.7669,-506.74	0/1:127:69,58:69:2435:58:2075:-148.712,0,-181.173	0/1:104:50,54:50:1735:54:1873:-137.239,0,-125.121	0/0:262:261,1:261:9124:1:36:0,-75.2742,-817.532	0/1:14:10,4:10:360:4:144:-9.06573,0,-28.5183	0/1:66:31,35:31:1098:35:1224:-90.1677,0,-79.2469	0/0:73:73,0:73:2591:0:0:0,-21.9752,-233.42	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.551	0/1:137:68,69:68:2432:69:2456:-179.022,0,-177.884	0/1:164:50,114:50:1796:114:3974:-308.244,0,-112.523	0/0:217:217,0:217:7649:0:0:0,-65.3235,-688.447	0/0:215:214,1:214:7520:1:36:0,-61.1232,-673.245
chr04	12631543	.	A	G	101409	PASS	AB=0.531411;ABP=24.7001;AC=141;AF=0.758065;AN=186;AO=4813;CIGAR=1X;DP=6010;DPB=6010;DPRA=10.8768;EPP=10454.3;EPPR=2584.9;GTI=3;LEN=1;MEANALT=1.04348;MQM=59.6821;MQMR=53.7485;NS=93;NUMALT=1;ODDS=2.98867;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170112;QR=42741;RO=1193;RPL=4813;RPP=10454.3;RPPR=2593.58;RPR=0;RUN=1;SAF=0;SAP=10454.3;SAR=4813;SRF=1;SRP=2584.9;SRR=1192;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:6,12:6:212:12:428:-33.4403,0,-13.933	1/1:51:0,51:0:0:51:1799:-162.154,-15.3525,0	1/1:214:0,213:0:0:213:7531:-677.386,-64.1194,0	1/1:142:0,142:0:0:142:4968:-446.93,-42.7463,0	1/1:27:0,27:0:0:27:960:-86.7071,-8.12781,0	1/1:14:0,14:0:0:14:499:-45.231,-4.21442,0	0/1:27:8,19:8:288:19:672:-52.6744,0,-18.1254	1/1:67:0,67:0:0:67:2373:-213.8,-20.169,0	0/1:52:16,36:16:572:36:1284:-100.02,0,-35.8509	1/1:59:0,59:0:0:59:2086:-187.965,-17.7608,0	1/1:53:0,53:0:0:53:1855:-167.225,-15.9546,0	1/1:110:0,110:0:0:110:3893:-350.542,-33.1133,0	1/1:68:0,68:0:0:68:2428:-218.766,-20.47,0	1/1:44:0,44:0:0:44:1559:-140.588,-13.2453,0	0/1:77:35,42:35:1260:42:1487:-110.881,0,-90.1627	0/1:62:28,34:28:1004:34:1208:-90.3274,0,-71.2049	1/1:43:0,43:0:0:43:1517:-136.305,-12.9443,0	0/1:35:18,17:18:648:17:586:-42.5234,0,-47.9315	0/1:45:15,30:15:540:30:1051:-81.3428,0,-34.8643	0/1:65:19,46:19:684:46:1628:-127.239,0,-42.2787	0/1:59:29,30:29:1035:30:1051:-77.1148,0,-75.2947	0/1:32:25,7:25:900:7:244:-12.6665,0,-71.4981	0/1:38:19,19:19:676:19:672:-49.363,0,-49.6861	1/1:21:0,21:0:0:21:748:-67.6407,-6.32163,0	1/1:60:0,60:0:0:60:2116:-190.7,-18.0618,0	0/1:140:70,69:70:2512:69:2444:-178.16,0,-184.051	0/1:181:115,66:115:4112:66:2332:-155.632,0,-313.648	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	0/1:137:70,67:70:2508:67:2372:-172.496,0,-184.379	0/1:38:11,27:11:396:27:956:-74.9166,0,-24.1998	1/1:68:0,68:0:0:68:2386:-214.996,-20.47,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.49116	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.0752	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	1/1:21:0,21:0:0:21:733:-66.2855,-6.32163,0	1/1:28:0,28:0:0:28:978:-88.3224,-8.42884,0	1/1:158:0,157:0:0:157:5586:-502.501,-47.2617,0	1/1:48:0,48:0:0:48:1704:-153.641,-14.4494,0	0/1:50:31,19:31:1112:19:641:-42.9531,0,-84.7216	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7624	0/1:51:13,38:13:460:38:1343:-105.794,0,-25.4209	1/1:36:0,36:0:0:36:1264:-114.061,-10.8371,0	0/1:39:21,18:21:752:18:624:-44.7403,0,-56.1669	0/1:57:30,27:30:1080:27:951:-68.7447,0,-80.1553	1/1:61:0,61:0:0:61:2144:-193.176,-18.3628,0	0/1:46:29,17:29:1036:17:608:-41.2046,0,-79.626	0/1:80:38,42:38:1356:42:1486:-109.941,0,-97.8307	0/1:108:36,72:36:1288:72:2555:-197.626,0,-82.3924	1/1:101:0,101:0:0:101:3577:-322.127,-30.404,0	1/1:139:0,139:0:0:139:4926:-443.486,-41.8432,0	1/1:68:0,68:0:0:68:2408:-216.904,-20.47,0	1/1:8:0,8:0:0:8:282:-25.7199,-2.40824,0	1/1:82:0,82:0:0:82:2903:-261.453,-24.6845,0	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5071	.:.:.:.:.:.:.:.	0/1:132:54,78:54:1928:78:2759:-208.807,0,-133.323	1/1:24:0,24:0:0:24:860:-77.7195,-7.22472,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79109	0/1:60:21,39:21:748:39:1388:-107.157,0,-49.1501	1/1:60:0,60:0:0:60:2123:-191.327,-18.0618,0	1/1:6:0,6:0:0:6:203:-18.5988,-1.80618,0	0/1:94:29,64:29:1044:64:2246:-174.033,0,-65.8639	1/1:133:0,133:0:0:133:4720:-424.959,-40.037,0	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.4199	1/1:57:0,57:0:0:57:2007:-180.889,-17.1587,0	0/1:96:47,49:47:1692:49:1720:-126.093,0,-123.222	0/1:84:50,34:50:1796:34:1208:-83.7386,0,-135.728	1/1:65:0,65:0:0:65:2287:-206.041,-19.567,0	1/1:81:0,81:0:0:81:2884:-259.707,-24.3834,0	1/1:44:1,43:1:36:43:1536:-134.443,-9.64705,0	0/1:11:2,9:2:72:9:324:-26.1922,0,-3.43213	1/1:59:0,59:0:0:59:2070:-186.508,-17.7608,0	0/1:35:9,26:9:324:26:915:-72.1213,0,-18.8956	1/1:125:0,125:0:0:125:4379:-394.245,-37.6288,0	1/1:111:0,111:0:0:111:3923:-353.263,-33.4143,0	0/1:14:10,4:10:356:4:144:-9.0992,0,-27.9665	0/1:114:43,71:43:1544:71:2485:-189.586,0,-103.227	0/1:22:14,8:14:500:8:284:-19.2807,0,-38.5957	1/1:112:1,111:1:36:111:3932:-350.453,-30.1222,0	1/1:92:0,92:0:0:92:3258:-293.4,-27.6948,0	1/1:145:0,145:0:0:145:5135:-462.281,-43.6494,0	1/1:59:0,59:0:0:59:2086:-188.007,-17.7608,0	0/1:70:32,38:32:1143:38:1339:-99.7348,0,-82.0291	0/1:33:21,12:21:748:12:432:-29.2848,0,-57.4493	1/1:114:0,114:0:0:114:4034:-363.224,-34.3174,0	0/1:14:4,10:4:144:10:352:-27.7971,0,-9.06573	0/1:67:36,31:36:1292:31:1099:-79.0367,0,-95.8023	1/1:73:1,72:1:36:72:2555:-226.586,-18.3769,0	1/1:40:0,40:0:0:40:1405:-126.74,-12.0412,0	0/1:98:48,50:48:1724:50:1780:-130.968,0,-124.882	0/1:81:54,27:54:1923:27:952:-61.581,0,-148.445	1/1:127:0,127:0:0:127:4499:-405.072,-38.2308,0	1/1:105:0,105:0:0:105:3696:-332.838,-31.6082,0
chr04	12641659	.	T	C	12025.4	PASS	AB=0.507079;ABP=4.02477;AC=44;AF=0.234043;AN=188;AO=1189;CIGAR=1X;DP=4613;DPB=4613;DPRA=1.40042;EPP=2550.26;EPPR=6833.88;GTI=0;LEN=1;MEANALT=1.06122;MQM=29.2834;MQMR=38.3412;NS=94;NUMALT=1;ODDS=1.95046;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42402;QR=122409;RO=3420;RPL=4;RPP=2550.26;RPPR=6833.88;RPR=1185;RUN=1;SAF=1189;SAP=2584.89;SAR=0;SRF=3420;SRP=7429.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:16,31:16:576:31:1099:-61.9726,0,-34.8776	0/0:45:45,0:45:1608:0:0:0,-13.5463,-136.415	0/0:73:72,1:72:2584:1:36:0,-19.239,-217.392	0/0:108:108,0:108:3860:0:0:0,-32.5112,-324.625	0/0:33:33,0:33:1180:0:0:0,-9.93399,-100.059	0/0:29:29,0:29:1032:0:0:0,-8.72987,-88.413	0/1:55:25,30:25:900:30:1068:-61.5669,0,-59.7316	0/0:100:99,1:99:3529:1:36:0,-27.5443,-298.343	0/1:74:34,40:34:1220:40:1432:-76.3535,0,-81.8103	0/0:31:31,0:31:1116:0:0:0,-9.33193,-94.8528	0/0:11:11,0:11:392:0:0:0,-3.31133,-32.2681	0/0:27:27,0:27:956:0:0:0,-8.12781,-82.5351	0/0:49:49,0:49:1764:0:0:0,-14.7505,-149.86	0/0:18:18,0:18:644:0:0:0,-5.41854,-54.9046	0/1:48:30,18:30:1076:18:644:-32.5313,0,-77.0172	0/1:20:8,12:8:288:12:415:-23.1481,0,-18.7089	0/0:16:16,0:16:561:0:0:0,-4.81648,-48.0678	0/1:19:5,14:5:180:14:504:-29.0302,0,-10.029	0/1:9:5,4:5:171:4:144:-7.41468,0,-12.2779	0/1:74:42,32:42:1508:32:1144:-59.6308,0,-104.528	0/1:81:47,34:47:1684:34:1203:-58.539,0,-117.8	0/1:57:19,38:19:684:38:1356:-86.4758,0,-42.198	0/1:36:20,16:20:720:16:567:-30.2575,0,-49.7283	0/0:25:25,0:25:900:0:0:0,-7.52575,-76.6202	0/0:58:58,0:58:2080:0:0:0,-17.4597,-175.228	0/1:162:74,87:74:2647:87:3111:-186.589,0,-178.37	0/1:110:63,47:63:2243:47:1679:-83.6482,0,-156.287	0/0:19:19,0:19:680:0:0:0,-5.71957,-57.5699	0/1:141:73,67:73:2620:67:2392:-138.387,0,-181.989	0/1:65:34,31:34:1216:31:1093:-56.4044,0,-83.6825	0/0:95:95,0:95:3407:0:0:0,-28.5978,-288.67	0/1:11:8,3:8:288:3:108:-3.92319,0,-21.4181	0/1:16:8,8:8:288:8:288:-15.1578,0,-19.6721	0/0:9:9,0:9:324:0:0:0,-2.70927,-27.0705	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.58608	0/0:20:20,0:20:716:0:0:0,-6.0206,-60.2212	0/0:95:95,0:95:3420:0:0:0,-28.5978,-292.893	0/0:64:63,0:63:2249:0:0:0,-18.9649,-190.098	0/1:13:6,7:6:216:7:248:-13.5237,0,-14.439	0/1:3:1,2:1:36:2:72:-4.12707,0,-2.48451	0/1:71:35,36:35:1260:36:1292:-67.3196,0,-85.2277	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.6318	0/1:92:41,51:41:1468:51:1813:-97.4554,0,-95.7964	0/1:20:12,8:12:428:8:288:-15.1696,0,-30.565	0/0:26:26,0:26:936:0:0:0,-7.82678,-79.4807	0/1:103:49,54:49:1760:54:1912:-113.956,0,-120.816	0/1:71:36,35:36:1292:35:1256:-64.6138,0,-88.725	0/1:154:72,82:72:2575:82:2911:-165.159,0,-171.84	0/0:72:72,0:72:2572:0:0:0,-21.6742,-217.943	0/0:68:68,0:68:2440:0:0:0,-20.47,-206.432	0/0:97:97,0:97:3480:0:0:0,-29.1999,-299.466	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.48528	0/0:82:82,0:82:2944:0:0:0,-24.6845,-251.677	0/1:28:16,11:16:572:11:396:-22.2319,0,-41.4754	0/0:19:19,0:19:684:0:0:0,-5.71957,-58.8859	0/1:51:22,29:22:779:29:1018:-55.6651,0,-51.0331	0/0:31:31,0:31:1116:0:0:0,-9.33193,-94.6722	0/0:15:15,0:15:536:0:0:0,-4.51545,-45.459	0/1:14:6,8:6:216:8:288:-18.0837,0,-14.7853	0/1:58:21,37:21:752:37:1332:-74.0798,0,-47.4467	0/0:61:61,0:61:2179:0:0:0,-18.3628,-185.196	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.4022	0/1:80:50,30:50:1796:30:1080:-56.6411,0,-131.368	0/0:102:99,3:99:3539:3:108:0,-23.0539,-289.264	0/1:52:26,26:26:936:26:924:-48.0983,0,-64.2777	0/0:35:35,0:35:1256:0:0:0,-10.536,-106.246	0/1:77:41,36:41:1468:36:1288:-70.6521,0,-100.972	0/1:63:26,37:26:936:37:1328:-77.8836,0,-60.6437	0/0:16:16,0:16:552:0:0:0,-4.81648,-46.5531	0/0:33:33,0:33:1164:0:0:0,-9.93399,-100.101	0/0:39:39,0:39:1396:0:0:0,-11.7402,-120.2	0/1:10:6,4:6:216:4:144:-6.74965,0,-15.6215	0/0:80:80,0:80:2845:0:0:0,-24.0824,-243.981	0/1:57:28,29:28:991:29:1036:-53.7955,0,-68.3917	0/0:64:64,0:64:2288:0:0:0,-19.2659,-193.117	0/0:58:58,0:58:2080:0:0:0,-17.4597,-175.196	0/1:74:23,51:23:811:51:1828:-103.79,0,-47.2689	0/1:52:38,14:38:1356:14:504:-18.6813,0,-100.945	0/1:12:8,4:8:288:4:144:-6.51159,0,-21.3799	0/0:30:30,0:30:1080:0:0:0,-9.0309,-90.9204	0/0:46:46,0:46:1652:0:0:0,-13.8474,-141.94	0/0:135:134,1:134:4792:1:36:0,-37.7363,-401.628	0/0:34:34,0:34:1212:0:0:0,-10.235,-101.954	0/1:28:13,15:13:468:15:521:-29.6001,0,-31.5448	0/1:16:9,7:9:324:7:248:-13.1091,0,-22.8811	0/0:45:44,1:44:1572:1:36:0,-10.6436,-130.814	0/1:13:8,5:8:288:5:180:-8.67314,0,-20.4516	0/1:34:16,18:16:564:18:644:-34.3681,0,-38.6321	0/0:32:32,0:32:1135:0:0:0,-9.63296,-96.8095	0/0:15:15,0:15:540:0:0:0,-4.51545,-46.104	0/1:37:19,18:19:684:18:640:-32.9002,0,-47.081	0/1:23:7,16:7:252:16:568:-34.3925,0,-14.7569	0/0:70:70,0:70:2504:0:0:0,-21.0721,-210.308	0/0:32:32,0:32:1152:0:0:0,-9.63296,-97.2579
chr04	12641687	.	CCAGT	TCAGC,CCAGC	81661.3	PASS	AB=0.492525,0.501495;ABP=4.14659,3.05575;AC=144,44;AF=0.765957,0.234043;AN=188;AO=3406,1178;CIGAR=1X3M1X,4M1X;DP=4604;DPB=4626.8;DPRA=0,1.25355;EPP=7399.05,2561;EPPR=7.35324;GTI=0;LEN=5,1;MEANALT=1.68085,2.25532;MQM=38.2073,29.343;MQMR=41;NS=94;NUMALT=2;ODDS=2.03268;PAIRED=0,0;PAIREDR=0;PAO=61,52.5;PQA=2135,1837;PQR=0;PRO=0.5;QA=118333,41229;QR=72;RO=2;RPL=3406,1178;RPP=7399.05,2561;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=3406,1178;SAP=7399.05,2561;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:48:0,16,32:0:0:16,32:539,1136:-110.309,-69.0067,-64.1903,-41.5511,0,-31.9181	1/1:46:0,46,0:0:0:46,0:1617,0:-137.656,-13.8474,0,-137.656,-13.8474,-137.656	1/1:72:0,71,1:0:0:71,1:2472,36:-211.313,-21.3731,0,-209.152,-18.938,-208.851	1/1:106:0,106,0:0:0:106,0:3694,0:-312.44,-31.9092,0,-312.44,-31.9092,-312.44	1/1:33:0,33,0:0:0:33,0:1167,0:-98.1916,-9.93399,0,-98.1916,-9.93399,-98.1916	1/1:30:0,30,0:0:0:30,0:1043,0:-89.4312,-9.0309,0,-89.4312,-9.0309,-89.4312	1/2:56:0,26,30:0:0:26,30:914,1050:-138.081,-68.4081,-60.5813,-69.9833,0,-60.9524	1/1:92:0,92,0:0:0:92,0:3216,0:-275.171,-27.6948,0,-275.171,-27.6948,-275.171	1/2:74:0,33,41:0:0:33,41:1149,1395:-174.469,-85.9179,-75.9839,-88.3923,0,-76.0501	1/1:32:0,32,0:0:0:32,0:1123,0:-95.9237,-9.63296,0,-95.9237,-9.63296,-95.9237	1/1:9:0,9,0:0:0:9,0:307,0:-25.4003,-2.70927,0,-25.4003,-2.70927,-25.4003	1/1:24:0,24,0:0:0:24,0:802,0:-69.4502,-7.22472,0,-69.4502,-7.22472,-69.4502	1/1:49:0,49,0:0:0:49,0:1748,0:-148.85,-14.7505,0,-148.85,-14.7505,-148.85	1/1:17:0,17,0:0:0:17,0:585,0:-50.1594,-5.11751,0,-50.1594,-5.11751,-50.1594	1/2:49:0,31,18:0:0:31,18:1089,636:-123.997,-41.3538,-32.0219,-82.9458,0,-77.5272	1/2:19:0,8,10:0:0:8,10:285,360:-43.4725,-21.64,-19.2318,-21.8848,0,-18.8745	1/1:14:0,13,0:0:0:13,0:437,0:-37.8865,-3.91339,0,-37.8865,-3.91339,-37.8865	1/2:18:0,5,13:0:0:5,13:180,460:-42.1463,-28.2258,-26.7206,-14.2434,0,-10.33	1/2:9:0,5,4:0:0:5,4:167,140:-21.8437,-8.8444,-7.33925,-13.2932,0,-12.0891	1/2:76:0,43,31:0:0:43,31:1497,1075:-183.475,-69.5632,-56.6189,-113.914,0,-104.582	1/2:80:0,48,31:0:0:48,31:1663,1080:-193.175,-65.9095,-51.4601,-127.349,0,-118.017	1/2:57:0,19,38:0:0:19,38:670,1314:-142.419,-90.0666,-84.3471,-52.6239,0,-41.1848	1/2:37:0,21,16:0:0:21,16:733,568:-91.3706,-36.3565,-30.0349,-55.2606,0,-50.4441	1/1:24:0,24,0:0:0:24,0:822,0:-70.7755,-7.22472,0,-70.7755,-7.22472,-70.7755	1/1:58:0,58,0:0:0:58,0:1979,0:-168.297,-17.4597,0,-168.297,-17.4597,-168.297	1/2:164:1,76,87:1:36:76,87:2609,3027:-403.071,-201.676,-181.65,-198.807,0,-175.469	1/2:112:1,63,47:1:36:63,47:2205,1626:-265.805,-98.113,-81.9576,-165.156,0,-153.816	1/1:19:0,19,0:0:0:19,0:642,0:-55.1238,-5.71957,0,-55.1238,-5.71957,-55.1238	1/2:144:0,78,64:0:0:78,64:2680,2264:-361.012,-153.863,-130.383,-207.241,0,-187.975	1/2:64:0,35,29:0:0:35,29:1199,1021:-154.096,-62.1656,-51.6296,-92.2255,0,-83.4957	1/1:94:0,94,0:0:0:94,0:3294,0:-280.695,-28.2968,0,-280.695,-28.2968,-280.695	1/2:11:0,8,3:0:0:8,3:274,108:-27.4352,-6.33143,-3.92319,-21.3806,0,-20.4775	1/2:16:0,8,8:0:0:8,8:286,284:-39.152,-17.4916,-15.0834,-21.9636,0,-19.5554	1/1:9:0,9,0:0:0:9,0:315,0:-26.5662,-2.70927,0,-26.5662,-2.70927,-26.5662	1/1:3:0,3,0:0:0:3,0:108,0:-9.58608,-0.90309,0,-9.58608,-0.90309,-9.58608	1/1:19:0,19,0:0:0:19,0:653,0:-55.475,-5.71957,0,-55.475,-5.71957,-55.475	1/1:97:0,97,0:0:0:97,0:3307,0:-286.509,-29.1999,0,-286.509,-29.1999,-286.509	1/1:64:0,64,0:0:0:64,0:2177,0:-185.399,-19.2659,0,-185.399,-19.2659,-185.399	1/2:13:0,6,7:0:0:6,7:215,239:-31.245,-15.065,-13.2589,-16.4829,0,-14.3756	1/2:3:0,2,1:0:0:2,1:72,36:-7.20058,-2.43517,-1.83311,-5.04693,0,-4.7459	1/2:71:0,35,36:0:0:35,36:1214,1275:-170.252,-77.4468,-66.9108,-93.1059,0,-82.2688	1/1:6:0,6,0:0:0:6,0:208,0:-18.079,-1.80618,0,-18.079,-1.80618,-18.079	1/2:93:0,41,52:0:0:41,52:1444,1782:-218.837,-109.548,-97.2056,-109.184,0,-93.5303	1/2:20:0,12,8:0:0:12,8:413,280:-50.2629,-18.572,-14.9596,-31.994,0,-29.5858	1/1:25:0,25,0:0:0:25,0:882,0:-75.4259,-7.52575,0,-75.4259,-7.52575,-75.4259	1/2:105:0,50,55:0:0:50,55:1743,1952:-266.145,-130.996,-115.945,-135.465,0,-118.909	1/2:73:0,37,36:0:0:37,36:1286,1284:-176.567,-77.5914,-66.4533,-99.161,0,-88.324	1/2:152:0,68,83:0:0:68,83:2354,2857:-364.372,-184.611,-164.141,-179.732,0,-154.747	1/1:71:0,71,0:0:0:71,0:2493,0:-212.369,-21.3731,0,-212.369,-21.3731,-212.369	1/1:68:0,68,0:0:0:68,0:2355,0:-200.764,-20.47,0,-200.764,-20.47,-200.764	1/1:98:0,97,0:0:0:97,0:3368,0:-291.173,-29.1999,0,-291.173,-29.1999,-291.173	1/1:3:0,3,0:0:0:3,0:101,0:-9.00422,-0.90309,0,-9.00422,-0.90309,-9.00422	1/1:81:0,80,0:0:0:80,0:2794,0:-240.507,-24.0824,0,-240.507,-24.0824,-240.507	1/2:27:0,16,11:0:0:16,11:565,388:-70.2559,-26.1102,-21.2937,-44.4586,0,-41.1472	1/1:20:0,19,0:0:0:19,0:670,0:-57.6668,-5.71957,0,-57.6668,-5.71957,-57.6668	1/2:51:0,22,29:0:0:22,29:763,998:-120.312,-61.9194,-55.2968,-58.6951,0,-49.9652	1/1:32:0,32,0:0:0:32,0:1106,0:-94.5205,-9.63296,0,-94.5205,-9.63296,-94.5205	1/1:16:0,16,0:0:0:16,0:533,0:-46.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chr04	12646607	.	T	G	90725.9	PASS	AB=0.439219;ABP=103.318;AC=137;AF=0.728723;AN=188;AO=4508;CIGAR=1X;DP=7528;DPB=7528;DPRA=0;EPP=9705.34;EPPR=6545.66;GTI=8;LEN=1;MEANALT=1.03191;MQM=59.9408;MQMR=59.5631;NS=94;NUMALT=1;ODDS=0.0129295;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155546;QR=106991;RO=3017;RPL=57;RPP=9303.17;RPPR=6253.86;RPR=4451;RUN=1;SAF=47;SAP=9388.03;SAR=4461;SRF=34;SRP=6262.35;SRR=2983;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:4,20:4:136:20:700:-56.0988,0,-5.34245	1/1:72:0,72:0:0:72:2469:-222.462,-21.6742,0	1/1:56:0,56:0:0:56:1978:-178.293,-16.8577,0	1/1:97:0,97:0:0:97:3343:-301.09,-29.1999,0	1/1:48:0,48:0:0:48:1688:-152.204,-14.4494,0	1/1:53:0,53:0:0:53:1808:-162.996,-15.9546,0	0/1:50:22,28:22:780:28:970:-72.5587,0,-55.4692	1/1:82:2,80:2:68:80:2785:-244.423,-18.2268,0	0/1:89:58,31:58:2062:31:1067:-69.5422,0,-158.397	1/1:60:0,60:0:0:60:2079:-187.379,-18.0618,0	1/1:59:0,59:0:0:59:2034:-183.333,-17.7608,0	1/1:68:1,67:1:36:67:2303:-203.933,-16.8718,0	1/1:69:0,69:0:0:69:2411:-217.246,-20.7711,0	1/1:73:0,73:0:0:73:2463:-221.923,-21.9752,0	0/1:50:21,29:21:747:29:991:-74.4439,0,-52.4989	0/1:59:23,36:23:824:36:1267:-96.5712,0,-56.6909	1/1:66:0,66:0:0:66:2265:-204.018,-19.868,0	0/1:47:20,27:20:672:27:943:-71.0348,0,-46.6295	0/1:115:89,26:89:3167:26:898:-46.5138,0,-250.588	0/1:57:31,26:31:1104:26:879:-62.2587,0,-82.5063	0/1:63:28,35:28:1000:35:1180:-87.5304,0,-70.3973	0/1:53:33,20:33:1161:20:716:-48.8122,0,-88.8401	0/1:42:16,26:16:572:26:876:-66.4993,0,-39.1655	1/1:60:0,60:0:0:60:2025:-182.504,-18.0618,0	1/1:44:0,44:0:0:44:1550:-139.79,-13.2453,0	0/1:194:81,113:81:2871:113:3861:-289.291,0,-200.225	0/1:91:44,47:44:1571:47:1633:-119.862,0,-113.581	1/1:29:0,29:0:0:29:991:-89.4982,-8.72987,0	0/1:102:41,60:41:1464:60:2069:-155.734,0,-101.309	0/1:68:14,54:14:504:54:1863:-147.476,0,-25.2234	1/1:52:0,52:0:0:52:1821:-164.169,-15.6536,0	0/0:201:198,2:198:7046:2:72:0,-53.6892,-627.319	0/0:209:208,1:208:7423:1:36:0,-59.317,-664.389	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:6:2,4:2:72:4:129:-10.1215,0,-5.03054	1/1:174:1,173:1:36:173:5948:-531.824,-48.7809,0	1/1:116:3,113:3:99:113:3910:-342.492,-25.6829,0	0/1:227:187,40:187:6586:40:1382:-56.3415,0,-524.361	0/0:137:135,2:135:4812:2:72:0,-34.4044,-426.191	0/1:72:39,33:39:1391:33:1131:-80.417,0,-103.802	1/1:36:0,36:0:0:36:1250:-112.8,-10.8371,0	0/1:118:53,65:53:1874:65:2200:-162.738,0,-133.376	0/1:39:20,19:20:696:19:652:-47.2581,0,-51.2199	1/1:46:0,46:0:0:46:1577:-142.212,-13.8474,0	0/1:86:50,36:50:1776:36:1241:-86.1007,0,-134.231	0/1:52:21,31:21:752:31:1084:-82.2126,0,-52.3527	0/1:111:62,49:62:2198:49:1709:-120.679,0,-164.667	1/1:40:0,40:0:0:40:1374:-123.955,-12.0412,0	1/1:81:0,81:0:0:81:2804:-252.598,-24.3834,0	1/1:102:0,102:0:0:102:3559:-320.519,-30.7051,0	1/1:4:0,4:0:0:4:140:-11.4563,-1.20412,0	1/1:76:0,76:0:0:76:2654:-239.106,-22.8783,0	0/1:25:9,16:9:320:16:544:-41.754,0,-21.6166	1/1:13:0,13:0:0:13:449:-40.7375,-3.91339,0	0/1:59:25,34:25:896:34:1200:-90.5442,0,-63.1914	1/1:44:0,44:0:0:44:1525:-137.537,-13.2453,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/0:307:301,6:301:10633:6:216:0,-72.6257,-936.888	0/1:73:36,37:36:1288:37:1308:-96.0457,0,-94.2404	1/1:111:0,111:0:0:111:3818:-343.814,-33.4143,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:49:8,41:8:288:41:1396:-111.18,0,-11.516	1/1:114:1,113:1:36:113:3911:-348.576,-30.7191,0	0/1:60:24,36:24:856:36:1275:-96.9905,0,-59.2947	1/1:45:0,45:0:0:45:1569:-141.498,-13.5464,0	0/1:107:47,60:47:1668:60:2018:-149.677,0,-118.192	0/1:75:45,30:45:1585:30:1014:-68.9827,0,-120.314	1/1:31:0,31:0:0:31:1066:-96.243,-9.33193,0	1/1:33:0,33:0:0:33:1164:-105.067,-9.93399,0	1/1:52:0,52:0:0:52:1741:-156.965,-15.6536,0	0/0:226:219,7:219:7731:7:243:0,-45.8253,-673.317	1/1:120:1,119:1:32:119:4108:-366.712,-32.9243,0	0/1:35:12,23:12:424:23:807:-62.4131,0,-27.9604	1/1:113:0,113:0:0:113:3929:-353.808,-34.0164,0	1/1:91:0,90:0:0:90:3114:-280.129,-27.0927,0	0/1:112:66,46:66:2338:46:1617:-112.102,0,-176.941	0/1:41:24,17:24:860:17:579:-40.0888,0,-65.3796	0/0:200:194,6:194:6892:6:207:0,-41.2391,-601.281	1/1:57:0,57:0:0:57:2006:-180.814,-17.1587,0	1/1:39:0,39:0:0:39:1339:-120.804,-11.7402,0	1/1:147:0,147:0:0:147:5125:-461.401,-44.2514,0	1/1:97:0,97:0:0:97:3317:-298.751,-29.1999,0	0/1:53:17,36:17:604:36:1234:-95.4052,0,-38.736	0/1:60:25,35:25:887:35:1215:-91.5043,0,-62.0771	1/1:104:0,104:0:0:104:3559:-320.525,-31.3071,0	0/1:32:15,17:15:536:17:562:-41.2588,0,-38.9386	0/1:61:33,28:33:1166:28:988:-70.8711,0,-86.8825	1/1:56:1,55:1:36:55:1883:-166.145,-13.2594,0	1/1:42:0,42:0:0:42:1407:-126.918,-12.6433,0	0/1:424:377,47:377:13351:47:1605:-17.097,0,-1073.63	0/1:45:30,15:30:1064:15:516:-33.2198,0,-82.5206	1/1:64:0,64:0:0:64:2188:-197.184,-19.2659,0	1/1:64:0,64:0:0:64:2166:-195.204,-19.2659,0
chr04	12646610	.	G	A	59545.1	PASS	AB=0.556331;ABP=89.8589;AC=51;AF=0.271277;AN=188;AO=3031;CIGAR=1X;DP=7665;DPB=7665;DPRA=1.57647;EPP=6576.06;EPPR=9965.91;GTI=8;LEN=1;MEANALT=1.02128;MQM=59.5734;MQMR=59.9598;NS=94;NUMALT=1;ODDS=0.301003;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107475;QR=163449;RO=4628;RPL=36;RPP=6275.77;RPPR=9563.59;RPR=2995;RUN=1;SAF=35;SAP=6284.25;SAR=2996;SRF=47;SRP=9648.49;SRR=4581;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:21,4:21:741:4:136:-5.04643,0,-59.4858	0/0:75:75,0:75:2667:0:0:0,-22.5772,-240.253	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.07	0/0:101:101,0:101:3532:0:0:0,-30.404,-318.089	0/0:49:49,0:49:1737:0:0:0,-14.7505,-156.613	0/0:52:52,0:52:1839:0:0:0,-15.6536,-165.79	0/1:50:27,23:27:955:23:815:-58.6169,0,-71.2134	0/0:84:84,0:84:2973:0:0:0,-25.2865,-267.789	0/1:88:32,56:32:1135:56:1966:-150.642,0,-75.9674	0/0:61:61,0:61:2138:0:0:0,-18.3628,-192.688	0/0:61:61,0:61:2159:0:0:0,-18.3628,-194.577	0/0:68:68,0:68:2384:0:0:0,-20.47,-214.817	0/0:72:72,0:72:2559:0:0:0,-21.6742,-230.56	0/0:76:76,0:76:2669:0:0:0,-22.8783,-240.456	0/1:50:29,21:29:1017:21:744:-52.2289,0,-76.7883	0/1:61:38,23:38:1360:23:819:-55.6566,0,-104.338	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.175	0/1:48:28,20:28:979:20:708:-49.5872,0,-73.9726	0/1:118:27,90:27:964:90:3213:-253.776,0,-51.4975	0/1:59:27,32:27:940:32:1143:-85.4109,0,-67.15	0/1:62:35,27:35:1213:27:949:-67.0461,0,-90.807	0/1:56:22,34:22:783:34:1191:-90.6339,0,-53.9344	0/1:43:26,17:26:902:17:612:-42.4644,0,-68.5462	0/0:66:64,0:64:2197:0:0:0,-19.2659,-197.738	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:196:114,82:114:4055:82:2915:-203.582,0,-306.136	0/1:93:47,46:47:1650:46:1648:-120.049,0,-120.79	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:103:60,43:60:2148:43:1519:-105.991,0,-162.581	0/1:73:57,16:57:2022:16:557:-28.4758,0,-160.276	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	1/1:200:2,198:2:68:198:7032:-626.425,-53.7483,0	1/1:210:1,209:1:36:209:7445:-666.441,-59.618,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:4,2:4:135:2:72:-5.03054,0,-10.6763	0/0:178:178,0:178:6319:0:0:0,-53.5833,-568.784	0/0:120:117,3:117:4128:3:108:0,-26.0484,-361.632	0/1:224:44,180:44:1568:180:6384:-506.952,0,-73.9809	1/1:141:3,138:3:108:138:4922:-432.843,-32.3701,0	0/1:74:34,40:34:1200:40:1414:-105.269,0,-86.0294	0/0:37:37,0:37:1310:0:0:0,-11.1381,-118.2	0/1:112:63,49:63:2223:49:1741:-123.24,0,-166.619	0/1:41:21,20:21:744:20:704:-51.3408,0,-54.9421	0/0:49:49,0:49:1712:0:0:0,-14.7505,-154.354	0/1:88:37,51:37:1308:51:1815:-137.081,0,-91.5309	0/1:52:32,20:32:1129:20:712:-48.7531,0,-86.2628	0/1:109:48,61:48:1703:61:2188:-164.369,0,-120.743	0/0:41:41,0:41:1440:0:0:0,-12.3422,-129.893	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:104:104,0:104:3646:0:0:0,-31.3071,-328.347	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:78:78,0:78:2747:0:0:0,-23.4803,-247.474	0/1:25:16,9:16:568:9:315:-21.1615,0,-43.9261	0/0:15:15,0:15:523:0:0:0,-4.51545,-47.3985	0/1:62:34,28:34:1169:28:1001:-71.7335,0,-86.8451	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.777	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	1/1:313:6,307:6:212:307:10875:-959.032,-74.7976,0	0/1:77:39,38:39:1395:38:1348:-98.4342,0,-102.669	0/0:114:114,0:114:3994:0:0:0,-34.3174,-359.647	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:50:42,8:42:1473:8:288:-11.215,0,-117.81	0/0:118:117,1:117:4145:1:36:0,-31.9233,-369.637	0/1:62:38,24:38:1345:24:851:-58.241,0,-102.684	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:107:59,48:59:2100:48:1675:-118.82,0,-157.06	0/1:76:30,46:30:1072:46:1624:-123.564,0,-73.9142	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:33:33,0:33:1163:0:0:0,-9.93399,-104.976	0/0:57:56,0:56:1945:0:0:0,-16.8577,-175.1	1/1:231:8,223:8:280:223:7839:-679.698,-43.9986,0	0/0:119:118,0:118:4175:0:0:0,-35.5215,-375.683	0/1:35:23,12:23:828:12:428:-28.3228,0,-64.3081	0/0:116:115,0:115:4038:0:0:0,-34.6184,-363.251	0/0:97:97,0:97:3443:0:0:0,-29.1999,-309.999	0/1:110:44,66:44:1576:66:2345:-178.175,0,-109.018	0/1:44:19,25:19:672:25:891:-67.2635,0,-47.5615	1/1:206:7,199:7:252:199:7092:-615.11,-38.9832,0	0/0:58:58,0:58:2052:0:0:0,-17.4597,-184.952	0/0:41:41,0:41:1439:0:0:0,-12.3422,-129.805	0/0:154:154,0:154:5417:0:0:0,-46.3586,-487.665	0/0:102:102,0:102:3603:0:0:0,-30.7051,-324.476	0/1:51:35,16:35:1244:16:576:-36.8225,0,-96.9121	0/1:61:35,26:35:1230:26:936:-66.1865,0,-92.6396	0/0:109:109,0:109:3853:0:0:0,-32.8123,-346.968	0/1:31:16,15:16:572:15:518:-37.6126,0,-42.4815	0/1:60:29,31:29:1010:31:1096:-80.8862,0,-73.1478	0/0:59:59,0:59:2090:0:0:0,-17.7608,-188.369	0/0:42:42,0:42:1470:0:0:0,-12.6433,-132.593	0/1:423:50,373:50:1761:373:13166:-1057.29,0,-31.4358	0/1:46:15,31:15:528:31:1103:-85.7277,0,-34.004	0/0:65:65,0:65:2269:0:0:0,-19.5669,-204.472	0/0:65:65,0:65:2287:0:0:0,-19.5669,-205.985
chr04	12646655	.	TTTT	CTTT,CTTC	164579	PASS	AB=0.442369,0.554465;ABP=94.1159,84.3793;AC=137,51;AF=0.728723,0.271277;AN=188;AO=4616,3060;CIGAR=1X3M,1X2M1X;DP=7698;DPB=7698.5;DPRA=0,1.45926;EPP=10026.5,6639.03;EPPR=5.18177;GTI=8;LEN=1,4;MEANALT=1.7234,2.19608;MQM=59.9337,59.5386;MQMR=60;NS=94;NUMALT=2;ODDS=0.998009;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=1;QA=164421,108371;QR=36;RO=1;RPL=4616,3060;RPP=10026.5,6647.72;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,1;SAP=10026.5,6639.03;SAR=4616,3059;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,23,4:0:0:23,4:816,143:-78.4919,-12.0107,-5.08697,-66.838,0,-65.6339	1/1:76:0,76,0:0:0:76,0:2717,0:-244.716,-22.8783,0,-244.716,-22.8783,-244.716	1/1:54:0,53,0:0:0:53,0:1889,0:-169.927,-15.9546,0,-169.927,-15.9546,-169.927	1/1:101:0,98,0:0:0:98,0:3493,0:-314.221,-29.5009,0,-314.221,-29.5009,-314.221	1/1:42:0,42,0:0:0:42,0:1497,0:-135.023,-12.6433,0,-135.023,-12.6433,-135.023	1/1:52:0,52,0:0:0:52,0:1838,0:-165.697,-15.6536,0,-165.697,-15.6536,-165.697	1/2:52:0,29,23:0:0:29,23:1040,822:-152.204,-67.3771,-58.6473,-85.1845,0,-78.2608	1/1:87:0,87,0:0:0:87,0:3067,0:-276.256,-26.1896,0,-276.256,-26.1896,-276.256	1/2:91:0,32,59:0:0:32,59:1152,2084:-263.479,-169.479,-159.846,-94.3572,0,-76.5964	1/1:63:0,63,0:0:0:63,0:2230,0:-200.961,-18.9649,0,-200.961,-18.9649,-200.961	1/1:62:0,59,0:0:0:59,0:2079,0:-187.051,-17.7608,0,-187.051,-17.7608,-187.051	1/1:69:0,69,0:0:0:69,0:2465,0:-222.102,-20.7711,0,-222.102,-20.7711,-222.102	1/1:72:0,72,0:0:0:72,0:2588,0:-233.168,-21.6742,0,-233.168,-21.6742,-233.168	1/1:77:0,77,0:0:0:77,0:2741,0:-246.931,-23.1793,0,-246.931,-23.1793,-246.931	1/2:50:0,29,21:0:0:29,21:1036,748:-145.788,-61.32,-52.5901,-84.824,0,-78.5024	1/2:61:0,38,23:0:0:38,23:1349,821:-177.187,-67.2739,-55.8347,-110.269,0,-103.345	1/1:66:0,66,0:0:0:66,0:2333,0:-209.951,-19.868,0,-209.951,-19.868,-209.951	1/2:48:0,28,20:0:0:28,20:993,712:-139.255,-58.3564,-49.9275,-81.2537,0,-75.2331	1/2:120:0,27,92:0:0:27,92:972,3241:-343.134,-263.822,-255.695,-79.3103,0,-51.6155	1/2:58:0,25,32:0:0:25,32:881,1137:-164.485,-92.7566,-85.2309,-71.837,0,-62.204	1/2:64:0,36,28:0:0:36,28:1277,981:-183.711,-79.6675,-68.8304,-104.394,0,-95.9652	1/2:49:0,20,29:0:0:20,29:716,1024:-142.134,-83.743,-77.7224,-58.7471,0,-50.0172	1/2:41:0,24,17:0:0:24,17:860,592:-118.564,-48.4097,-41.185,-70.425,0,-65.3075	1/1:68:0,67,1:0:0:67,1:2389,36:-214.906,-20.169,0,-211.969,-16.8718,-211.667	1/1:45:0,45,0:0:0:45,0:1616,0:-145.73,-13.5464,0,-145.73,-13.5464,-145.73	1/2:196:0,115,81:0:0:115,81:4106,2875:-569.348,-234.601,-199.983,-335.103,0,-310.719	1/2:94:0,52,42:0:0:52,42:1868,1497:-274.032,-121.643,-105.989,-152.746,0,-140.102	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:102:0,61,41:0:0:61,41:2162,1456:-295.117,-118.991,-100.628,-176.481,0,-164.138	1/2:74:0,58,16:0:0:58,16:2088,571:-217.275,-46.9018,-29.4421,-170.73,0,-165.914	1/1:53:0,53,0:0:0:53,0:1904,0:-171.638,-15.9546,0,-171.638,-15.9546,-171.638	2/2:207:0,2,205:0:0:2,205:72,7276:-654.491,-648.616,-648.014,-61.7112,-55.4765,0	2/2:215:0,1,214:0:0:1,214:36,7605:-684.067,-681.129,-680.828,-64.4204,-61.1232,0	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:6:0,4,2:0:0:4,2:144,72:-17.9843,-6.23466,-5.03054,-12.1095,0,-11.5074	1/1:178:0,177,0:0:0:177,0:6276,0:-564.564,-53.2823,0,-564.564,-53.2823,-564.564	1/1:122:0,118,4:0:0:118,4:4198,143:-377.45,-35.5215,0,-365.79,-23.5042,-364.586	1/2:233:0,43,189:0:0:43,189:1544,6637:-666.027,-540.076,-527.132,-125.949,0,-69.0543	2/2:141:0,3,138:0:0:3,138:108,4901:-440.699,-431.886,-430.983,-41.5421,-32.3701,0	1/2:73:0,33,40:0:0:33,40:1169,1429:-212.081,-116.855,-106.921,-95.5813,0,-83.5401	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/2:110:0,59,50:0:0:59,50:2094,1768:-314.576,-143.964,-126.204,-170.606,0,-155.554	1/2:41:0,21,20:0:0:21,20:752,712:-119.711,-58.3836,-52.062,-61.6846,0,-55.664	1/1:49:0,49,0:0:0:49,0:1745,0:-157.285,-14.7505,0,-157.285,-14.7505,-157.285	1/2:86:0,34,52:0:0:34,52:1201,1811:-245.41,-147.602,-137.367,-98.1586,0,-82.5051	1/2:53:0,32,21:0:0:32,21:1144,745:-154.334,-61.053,-51.42,-93.6366,0,-87.3149	1/2:110:0,49,61:0:0:49,61:1751,2163:-319.338,-176.571,-161.82,-143.124,0,-124.761	1/1:41:0,41,0:0:0:41,0:1442,0:-130.072,-12.3422,0,-130.072,-12.3422,-130.072	1/1:83:0,83,0:0:0:83,0:2969,0:-267.427,-24.9855,0,-267.427,-24.9855,-267.427	1/1:101:1,100,0:1:36:100,0:3573,0:-318.177,-26.8058,0,-318.478,-30.103,-321.415	1/1:4:0,4,0:0:0:4,0:135,0:-11.7628,-1.20412,0,-11.7628,-1.20412,-11.7628	1/1:73:0,73,0:0:0:73,0:2628,0:-236.766,-21.9752,0,-236.766,-21.9752,-236.766	1/2:25:0,16,9:0:0:16,9:576,315:-72.9839,-25.9788,-21.1623,-47.3585,0,-44.6492	1/1:14:0,14,0:0:0:14,0:489,0:-44.3389,-4.21442,0,-44.3389,-4.21442,-44.3389	1/2:64:0,36,28:0:0:36,28:1289,982:-185.379,-80.2559,-69.4188,-105.477,0,-97.0478	1/1:44:0,44,0:0:0:44,0:1561,0:-140.777,-13.245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chr04	12699058	.	T	C	29458.3	PASS	AB=0.491625;ABP=5.19268;AC=42;AF=0.223404;AN=188;AO=1778;CIGAR=1X;DP=8200;DPB=8200;DPRA=1.2689;EPP=3846.54;EPPR=13824.7;GTI=1;LEN=1;MEANALT=1.02;MQM=59.9944;MQMR=59.9936;NS=94;NUMALT=1;ODDS=1.25529;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63445;QR=230031;RO=6421;RPL=2;RPP=3846.54;RPPR=13824.7;RPR=1776;RUN=1;SAF=1778;SAP=3863.89;SAR=0;SRF=6421;SRP=13946;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:154:153,1:153:5487:1:36:0,-42.7603,-490.357	0/0:70:70,0:70:2494:0:0:0,-21.0721,-224.712	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:108:58,50:58:2072:50:1764:-126.529,0,-154.24	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.088	0/1:35:28,7:28:1008:7:252:-12.4929,0,-80.5003	0/0:191:191,0:191:6856:0:0:0,-57.4967,-617.107	0/0:137:136,1:136:4888:1:36:0,-37.6428,-436.472	0/0:87:87,0:87:3106:0:0:0,-26.1896,-279.766	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:179:179,0:179:6432:0:0:0,-53.8844,-578.964	0/1:72:39,33:39:1396:33:1180:-84.8339,0,-104.265	0/1:59:31,28:31:1112:28:996:-72.1941,0,-82.6306	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/1:60:33,27:33:1184:27:968:-69.3756,0,-88.8065	0/1:45:24,21:24:864:21:752:-54.4599,0,-64.5362	0/1:88:47,41:47:1688:41:1461:-105.295,0,-125.716	0/1:95:40,55:40:1432:55:1942:-146.457,0,-100.58	0/1:40:13,27:13:468:27:964:-75.0356,0,-30.4184	0/1:42:26,16:26:921:16:568:-38.8086,0,-70.5619	0/0:69:64,5:64:2296:5:180:0,-4.219,-190.349	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:278:143,134:143:5132:134:4807:-349.078,0,-378.315	0/1:156:86,70:86:3058:70:2508:-179.012,0,-228.486	0/0:38:38,0:38:1350:0:0:0,-11.4391,-121.799	0/1:155:92,63:92:3308:63:2233:-154.573,0,-251.278	0/1:132:64,68:64:2296:68:2417:-178.049,0,-167.165	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:223:222,1:222:7971:1:36:0,-63.5314,-713.81	0/0:105:105,0:105:3741:0:0:0,-31.6081,-336.886	0/1:98:47,51:47:1680:51:1824:-134.937,0,-121.986	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:95:44,51:44:1561:51:1813:-134.853,0,-112.182	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:70:41,29:41:1468:29:1044:-73.2027,0,-111.344	0/1:100:55,45:55:1980:45:1620:-115.987,0,-148.371	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:49:22,27:22:792:27:964:-72.3264,0,-56.8552	0/1:63:38,25:38:1368:25:900:-62.3561,0,-104.456	0/1:132:69,63:69:2467:63:2244:-162.488,0,-182.548	0/0:117:117,0:117:4189:0:0:0,-35.2205,-377.19	0/0:167:165,2:165:5888:2:72:0,-43.4353,-523.193	0/0:150:150,0:150:5384:0:0:0,-45.1545,-484.69	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:87:87,0:87:3105:0:0:0,-26.1896,-279.676	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:94:40,54:40:1432:54:1916:-144.421,0,-100.881	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:28:14,14:14:489:14:504:-37.2693,0,-35.9101	0/1:98:40,58:40:1427:58:2071:-157.159,0,-99.2258	0/0:191:190,1:190:6823:1:36:0,-53.8985,-610.539	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:223:113,110:113:4026:110:3936:-287.303,0,-295.397	0/0:155:150,5:150:5392:5:180:0,-30.1076,-468.856	0/1:85:52,33:52:1855:33:1188:-81.641,0,-141.642	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/1:74:45,29:45:1616:29:1036:-71.2777,0,-123.454	0/1:105:32,73:32:1137:73:2620:-204.439,0,-71.0288	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.24	0/0:166:166,0:166:5952:0:0:0,-49.971,-535.786	0/1:33:12,21:12:432:21:733:-56.3565,0,-29.2872	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:69:36,33:36:1296:33:1175:-85.2859,0,-96.1729	0/0:156:156,0:156:5592:0:0:0,-46.9607,-503.402	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/1:87:48,39:48:1720:39:1392:-99.3894,0,-128.896	0/1:177:104,73:104:3732:73:2618:-182.585,0,-282.798	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.868	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:164:163,1:163:5829:1:36:0,-45.7706,-521.123	0/0:123:123,0:123:4403:0:0:0,-37.0267,-396.442	0/1:74:35,39:35:1256:39:1391:-103.212,0,-91.0691	0/1:71:33,38:33:1188:38:1345:-99.9764,0,-85.8555	0/0:152:152,0:152:5464:0:0:0,-45.7566,-491.885	0/1:28:13,15:13:468:15:536:-40.146,0,-34.0308	0/1:83:35,48:35:1244:48:1715:-129.649,0,-87.2792	0/0:71:71,0:71:2547:0:0:0,-21.3731,-229.48	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.53	0/1:155:78,77:78:2787:77:2751:-201.172,0,-204.04	0/1:79:23,56:23:824:56:1965:-153.342,0,-50.7019	0/0:132:132,0:132:4705:0:0:0,-39.736,-423.61	0/0:156:156,0:156:5612:0:0:0,-46.9607,-505.198
chr04	12699074	.	A	G	164812	PASS	AB=0.505051;ABP=3.79993;AC=146;AF=0.776596;AN=188;AO=6340;CIGAR=1X;DP=8121;DPB=8121;DPRA=0;EPP=3943.74;EPPR=1327.56;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9897;MQMR=59.9944;NS=94;NUMALT=1;ODDS=0.177132;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226494;QR=63718;RO=1780;RPL=1474;RPP=3943.74;RPPR=1327.56;RPR=4866;RUN=1;SAF=6340;SAP=13770.1;SAR=0;SRF=1780;SRP=3868.23;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:154:0,154:0:0:154:5499:-495.036,-46.3586,0	1/1:69:0,69:0:0:69:2431:-219.041,-20.7711,0	1/1:118:0,118:0:0:118:4202:-378.36,-35.5215,0	1/1:26:0,26:0:0:26:913:-82.484,-7.82678,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:108:50,58:50:1800:58:2069:-153.968,0,-129.771	1/1:123:0,123:0:0:123:4408:-396.892,-37.0267,0	0/1:34:7,27:7:252:27:953:-75.8483,0,-12.7939	1/1:191:0,191:0:0:191:6848:-616.388,-57.4967,0	1/1:140:0,140:0:0:140:5023:-452.215,-42.1442,0	1/1:85:0,85:0:0:85:3024:-272.389,-25.5876,0	1/1:80:0,80:0:0:80:2861:-257.726,-24.0824,0	1/1:176:0,176:0:0:176:6294:-566.551,-52.9813,0	0/1:69:33,36:33:1180:36:1296:-96.1729,0,-85.737	0/1:61:30,31:30:1067:31:1105:-81.3973,0,-77.9784	1/1:126:0,126:0:0:126:4510:-406.068,-37.9298,0	0/1:60:27,33:27:972:33:1184:-88.8065,0,-69.7361	0/1:46:21,25:21:748:25:900:-67.4736,0,-53.7979	0/1:85:39,46:39:1400:46:1656:-123.741,0,-100.712	0/1:95:56,39:56:2004:39:1384:-96.261,0,-152.036	0/1:40:27,13:27:968:13:468:-30.4184,0,-75.3962	0/1:42:17,25:17:612:25:900:-68.6778,0,-42.7702	1/1:68:5,63:5:180:63:2239:-185.221,-3.91798,0	1/1:28:0,28:0:0:28:995:-89.8647,-8.42884,0	0/1:272:133,139:133:4761:139:4988:-367.186,0,-346.765	0/1:158:71,87:71:2526:87:3080:-229.863,0,-180.026	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:154:63,91:63:2264:91:3259:-247.172,0,-157.664	0/1:133:68,65:68:2406:65:2306:-167.762,0,-176.757	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:219:0,219:0:0:219:7868:-708.143,-65.9256,0	1/1:105:0,105:0:0:105:3720:-335.001,-31.6082,0	0/1:101:53,48:53:1904:48:1728:-125.401,0,-141.228	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:97:52,45:52:1860:45:1608:-115.81,0,-138.48	1/1:41:0,41:0:0:41:1463:-131.965,-12.3422,0	0/1:70:29,41:29:1044:41:1471:-111.614,0,-73.2027	0/1:100:45,55:45:1616:55:1967:-147.201,0,-115.627	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	0/1:48:26,22:26:924:22:788:-56.7954,0,-69.0282	0/1:66:25,41:25:885:41:1461:-111.917,0,-60.0985	0/1:133:64,69:64:2296:69:2437:-179.545,0,-166.864	1/1:113:0,113:0:0:113:4029:-362.798,-34.0164,0	1/1:165:2,162:2:72:162:5790:-514.411,-42.8188,0	1/1:148:0,148:0:0:148:5300:-477.134,-44.5524,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:84:0,84:0:0:84:2996:-269.873,-25.2865,0	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:96:53,43:53:1908:43:1528:-108.914,0,-143.099	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:28:14,14:14:500:14:492:-36.17,0,-36.9073	0/1:95:57,38:57:2028:38:1356:-93.7426,0,-154.195	1/1:190:1,189:1:36:189:6766:-605.413,-53.5974,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:221:111,110:111:3980:110:3954:-289.522,0,-291.862	1/1:150:5,145:5:180:145:5162:-448.168,-28.6024,0	0/1:83:34,49:34:1220:49:1751:-132.888,0,-85.1213	1/1:50:0,50:0:0:50:1760:-158.681,-15.0515,0	0/1:75:29,46:29:1044:46:1644:-125.67,0,-71.6976	0/1:107:75,32:75:2673:32:1144:-71.0593,0,-208.604	1/1:73:0,73:0:0:73:2595:-233.799,-21.9752,0	1/1:58:0,58:0:0:58:2041:-183.958,-17.4597,0	1/1:162:1,161:1:36:161:5775:-516.265,-45.1686,0	0/1:35:22,13:22:780:13:464:-31.5615,0,-59.987	1/1:37:0,37:0:0:37:1330:-120.002,-11.1381,0	0/1:67:33,34:33:1184:34:1216:-89.5776,0,-86.6993	1/1:151:0,151:0:0:151:5393:-485.501,-45.4555,0	1/1:134:0,134:0:0:134:4812:-433.234,-40.338,0	0/1:81:38,43:38:1368:43:1531:-113.699,0,-99.0374	0/1:172:71,101:71:2537:101:3613:-273.598,0,-176.802	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	1/1:88:0,88:0:0:88:3120:-281.026,-26.4906,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:160:1,159:1:36:159:5665:-506.372,-44.5665,0	1/1:122:0,122:0:0:122:4326:-389.514,-36.7257,0	0/1:73:37,36:37:1332:36:1283:-93.7974,0,-98.2072	0/1:71:38,33:38:1368:33:1184:-85.4952,0,-102.048	1/1:147:0,147:0:0:147:5259:-473.447,-44.2514,0	0/1:27:14,13:14:489:13:464:-33.9697,0,-36.2111	0/1:83:50,33:50:1785:33:1184:-81.8828,0,-135.945	1/1:71:0,71:0:0:71:2543:-229.12,-21.3731,0	1/1:92:0,92:0:0:92:3280:-295.418,-27.6948,0	0/1:153:76,77:76:2736:77:2756:-201.597,0,-200.424	0/1:79:56,23:56:2001:23:828:-51.0627,0,-156.58	1/1:129:0,129:0:0:129:4608:-414.883,-38.8329,0	1/1:153:0,153:0:0:153:5481:-493.415,-46.0576,0
chr04	12699242	.	A	C	24211.6	PASS	AB=0.495036;ABP=3.6355;AC=44;AF=0.236559;AN=186;AO=1448;CIGAR=1X;DP=5902;DPB=5902;DPRA=1.13378;EPP=3147.3;EPPR=9633.51;GTI=1;LEN=1;MEANALT=1.11111;MQM=59.9993;MQMR=59.9991;NS=93;NUMALT=1;ODDS=1.01487;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51623;QR=158444;RO=4447;RPL=3;RPP=3121.3;RPPR=9538.33;RPR=1445;RUN=1;SAF=3;SAP=3121.3;SAR=1445;SRF=11;SRP=9564.24;SRR=4436;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.759	0/0:70:70,0:70:2482:0:0:0,-21.0721,-223.631	0/0:110:110,0:110:3931:0:0:0,-33.1133,-353.982	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/1:77:53,24:53:1904:24:855:-54.0909,0,-148.458	0/0:120:118,2:118:4196:2:72:0,-29.2869,-370.984	0/1:67:40,27:40:1410:27:956:-66.1867,0,-107.027	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/0:70:70,0:70:2463:0:0:0,-21.0721,-221.923	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/0:102:102,0:102:3608:0:0:0,-30.7051,-324.927	0/1:45:21,24:21:752:24:856:-63.8148,0,-54.4599	0/1:51:25,26:25:891:26:919:-67.6736,0,-65.1562	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:29:18,11:18:640:11:396:-27.2529,0,-49.1994	0/1:42:24,18:24:855:18:644:-45.6473,0,-64.6269	0/1:54:23,31:23:819:31:1116:-84.4961,0,-57.7759	0/1:193:108,85:108:3875:85:3039:-215.641,0,-290.844	0/1:33:12,21:12:432:21:744:-57.3503,0,-29.2872	0/1:92:45,47:45:1586:47:1666:-122.53,0,-115.332	0/1:33:30,3:30:1053:3:108:-0.14118,0,-85.1446	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:150:79,70:79:2840:70:2512:-181.118,0,-210.624	0/1:113:54,59:54:1917:59:2103:-155.522,0,-138.789	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:154:86,68:86:3039:68:2432:-172.777,0,-227.381	0/1:84:38,46:38:1364:46:1652:-123.682,0,-97.7742	0/0:81:81,0:81:2875:0:0:0,-24.3834,-258.985	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:161:161,0:161:5754:0:0:0,-48.4658,-517.976	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:52:22,30:22:784:30:1071:-81.0481,0,-55.2304	.:.:.:.:.:.:.:.	0/1:72:32,40:32:1137:40:1431:-107.413,0,-80.9628	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:64:42,22:42:1482:22:780:-51.2571,0,-114.407	0/1:64:32,32:32:1144:32:1113:-81.2064,0,-84.0036	0/0:31:30,0:30:1076:0:0:0,-9.0309,-96.7931	0/1:41:20,21:20:712:21:752:-55.664,0,-52.0644	0/1:40:26,14:26:936:14:500:-33.295,0,-72.5183	0/1:112:62,50:62:2195:50:1779:-126.677,0,-164.097	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:147:147,0:147:5262:0:0:0,-44.2514,-473.715	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.962	0/0:18:18,0:18:626:0:0:0,-5.41854,-56.6633	0/0:38:38,0:38:1344:0:0:0,-11.4391,-121.257	0/1:49:30,19:30:1059:19:684:-47.1399,0,-80.8696	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:75:34,41:34:1212:41:1454:-108.577,0,-86.8091	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:62:20,42:20:708:42:1493:-116,0,-45.3817	0/0:89:89,0:89:3143:0:0:0,-26.7917,-283.096	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/1:173:73,100:73:2615:100:3583:-270.598,0,-183.519	0/0:79:79,0:79:2831:0:0:0,-23.7814,-255.028	0/1:60:45,15:45:1608:15:528:-29.7896,0,-126.948	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/1:125:67,58:67:2395:58:2080:-149.842,0,-178.178	0/1:82:33,49:33:1169:49:1760:-133.999,0,-80.8308	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:74:74,0:74:2632:0:0:0,-22.2762,-237.125	0/1:40:19,21:19:684:21:748:-55.6041,0,-49.8491	0/0:154:153,0:153:5416:0:0:0,-46.0576,-487.319	0/0:101:101,0:101:3602:0:0:0,-30.404,-324.386	0/1:48:19,29:19:680:29:1027:-78.2927,0,-47.0797	0/1:115:45,69:45:1575:69:2459:-186.886,0,-107.36	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:102:102,0:102:3639:0:0:0,-30.7051,-327.715	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/1:58:31,27:31:1104:27:952:-68.5336,0,-82.2109	0/1:33:15,18:15:540:18:640:-47.9953,0,-39.0025	0/0:111:111,0:111:3965:0:0:0,-33.4143,-357.04	0/1:20:9,11:9:324:11:392:-29.5995,0,-23.4853	0/1:49:24,23:24:847:23:796:-57.5248,0,-62.1182	0/0:55:55,0:55:1958:0:0:0,-16.5566,-176.494	0/0:57:57,0:57:2026:0:0:0,-17.1587,-182.611	0/1:120:48,72:48:1724:72:2563:-194.796,0,-119.322	0/1:69:24,44:24:855:44:1568:-120.582,0,-56.4407	0/0:172:172,0:172:6141:0:0:0,-51.7772,-552.787	0/0:90:90,0:90:3206:0:0:0,-27.0927,-288.763
chr04	12699264	.	C	T	23066.2	PASS	AB=0.486747;ABP=7.4422;AC=44;AF=0.236559;AN=186;AO=1416;CIGAR=1X;DP=5898;DPB=5898;DPRA=1.12234;EPP=3017.31;EPPR=9547.49;GTI=1;LEN=1;MEANALT=1.02222;MQM=59.9965;MQMR=59.9931;NS=93;NUMALT=1;ODDS=0.0671029;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49754;QR=160258;RO=4479;RPL=1409;RPP=3017.31;RPPR=9547.49;RPR=7;RUN=1;SAF=0;SAP=3077.82;SAR=1416;SRF=0;SRP=9729.04;SRR=4479;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:13,11:13:468:11:377:-27.0332,0,-35.2349	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:109:109,0:109:3897:0:0:0,-32.8123,-350.922	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:79:54,25:54:1931:25:862:-54.11,0,-150.285	0/0:119:117,2:117:4159:2:72:0,-28.9858,-367.653	0/1:64:39,25:39:1404:25:873:-59.6186,0,-107.393	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/1:43:22,21:22:788:21:752:-55.062,0,-58.3005	0/1:48:24,24:24:864:24:841:-61.5569,0,-63.6331	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:30:19,11:19:680:11:396:-26.9518,0,-52.4983	0/1:41:25,16:25:900:16:557:-38.1133,0,-68.9788	0/1:52:23,29:23:824:29:1044:-78.6212,0,-58.8298	0/1:191:109,82:109:3920:82:2826:-197.078,0,-295.494	0/1:33:12,21:12:428:21:752:-58.0723,0,-28.9248	0/1:86:43,43:43:1540:43:1483:-107.869,0,-113.004	0/1:33:30,3:30:1057:3:108:-0.14118,0,-85.505	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:153:81,72:81:2893:72:2512:-180.27,0,-214.547	0/1:114:54,60:54:1940:60:2118:-156.568,0,-140.559	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:151:82,69:82:2921:69:2438:-174.217,0,-217.668	0/1:82:38,44:38:1360:44:1557:-115.735,0,-98.0161	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:11:3,8:3:104:8:284:-22.592,0,-6.39148	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/0:164:164,0:164:5873:0:0:0,-49.3689,-528.679	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:51:21,30:21:756:30:1072:-81.4399,0,-53.0147	.:.:.:.:.:.:.:.	0/1:73:33,40:33:1188:40:1428:-106.842,0,-85.2534	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/1:64:42,22:42:1504:22:780:-51.2571,0,-116.389	0/1:63:34,29:34:1212:29:1014:-72.6035,0,-90.4214	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/1:42:21,21:21:752:21:733:-53.6464,0,-55.363	0/1:38:27,11:27:949:11:373:-22.4561,0,-74.2836	0/1:116:66,50:66:2360:50:1736:-121.597,0,-177.739	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:146:146,0:146:5240:0:0:0,-43.9504,-471.736	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:50:31,19:31:1112:19:680:-46.4777,0,-85.3389	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:75:37,38:37:1328:38:1326:-97.0584,0,-97.245	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:62:22,40:22:784:40:1417:-109.161,0,-52.2201	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.778	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:173:72,101:72:2576:101:3587:-270.955,0,-180.011	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.539	0/1:62:45,17:45:1605:17:582:-34.035,0,-126.074	0/0:36:36,0:36:1261:0:0:0,-10.8371,-113.79	0/1:127:69,57:69:2484:57:1995:-141.529,0,-185.523	0/1:82:33,49:33:1179:49:1682:-126.974,0,-81.7328	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:14:9,5:9:324:5:174:-11.7868,0,-25.2914	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:40:19,21:19:680:21:744:-55.2431,0,-49.488	0/0:156:155,0:155:5543:0:0:0,-46.6596,-498.635	0/0:102:102,0:102:3624:0:0:0,-30.7051,-326.365	0/1:42:19,23:19:684:23:820:-61.4793,0,-49.2471	0/1:115:46,69:46:1652:69:2423:-183.704,0,-114.35	0/1:21:8,13:8:288:13:460:-35.4137,0,-19.9458	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:103:102,0:102:3642:0:0:0,-30.7051,-327.77	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:59:31,28:31:1104:28:1008:-73.2756,0,-81.9099	0/1:33:15,18:15:540:18:633:-47.3611,0,-39.0025	0/0:113:113,0:113:4048:0:0:0,-34.0164,-364.507	0/1:20:9,11:9:320:11:362:-26.8752,0,-23.1218	0/1:50:26,24:26:932:24:841:-60.9549,0,-68.8291	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:117:48,69:48:1728:69:2457:-186.163,0,-120.585	0/1:66:26,40:26:906:40:1395:-105.973,0,-61.9806	0/0:174:174,0:174:6222:0:0:0,-52.3792,-560.073	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621
chr04	12971395	.	G	A	195953	PASS	AB=0.45254;ABP=120.084;AC=145;AF=0.771277;AN=188;AO=9280;CIGAR=1X;DP=12574;DPB=12574;DPRA=0;EPP=20032.9;EPPR=7142.81;GTI=3;LEN=1;MEANALT=1.02128;MQM=59.9412;MQMR=59.9988;NS=94;NUMALT=1;ODDS=0.519302;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=330971;QR=117921;RO=3292;RPL=9266;RPP=20032.9;RPPR=7151.5;RPR=14;RUN=1;SAF=0;SAP=20154.3;SAR=9280;SRF=1;SRP=7142.81;SRR=3291;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:33,15:33:1180:15:527:-33.3107,0,-92.0586	1/1:115:0,115:0:0:115:4111:-370.175,-34.6185,0	1/1:175:0,175:0:0:175:6242:-561.877,-52.6803,0	1/1:327:3,324:3:108:324:11577:-1031.73,-88.3616,0	1/1:62:2,60:2:72:60:2144:-186.386,-11.8271,0	1/1:79:0,79:0:0:79:2801:-252.33,-23.7814,0	0/1:155:89,66:89:3192:66:2348:-164.919,0,-240.843	1/1:232:0,232:0:0:232:8253:-742.759,-69.839,0	0/1:123:88,35:88:3140:35:1248:-75.5982,0,-245.8	1/1:145:0,145:0:0:145:5157:-464.274,-43.6494,0	1/1:98:0,98:0:0:98:3504:-315.569,-29.5009,0	1/1:97:0,97:0:0:97:3476:-313.048,-29.1999,0	1/1:122:1,121:1:36:121:4324:-385.737,-33.1274,0	1/1:107:0,107:0:0:107:3785:-340.851,-32.2102,0	0/1:110:61,49:61:2180:49:1760:-125.571,0,-163.353	0/1:75:36,39:36:1288:39:1404:-104.077,0,-93.6463	1/1:76:0,76:0:0:76:2710:-244.133,-22.8783,0	0/1:78:49,29:49:1760:29:1036:-70.0736,0,-135.204	0/1:64:22,42:22:784:42:1500:-116.029,0,-51.618	0/1:324:155,169:155:5537:169:6030:-445.267,0,-400.921	0/1:238:133,105:133:4768:105:3726:-263.898,0,-357.631	0/1:112:79,33:79:2820:33:1175:-72.3132,0,-220.324	0/1:114:67,47:67:2400:47:1676:-116.808,0,-181.937	1/1:158:5,153:5:176:153:5430:-472.644,-31.3777,0	1/1:95:0,95:0:0:95:3378:-304.207,-28.5979,0	0/1:456:293,163:293:10480:163:5773:-382.409,0,-805.849	0/1:263:117,146:117:4192:146:5207:-389.562,0,-298.29	1/1:78:1,77:1:36:77:2743:-243.514,-19.8821,0	0/1:364:170,194:170:6088:194:6915:-512.826,0,-438.447	0/1:178:100,78:100:3580:78:2786:-197.398,0,-268.824	1/1:187:1,186:1:36:186:6600:-590.484,-52.6943,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:305:0,305:0:0:305:10922:-982.876,-91.8142,0	1/1:225:0,225:0:0:225:8035:-723.165,-67.7318,0	0/1:70:27,43:27:964:43:1544:-118.181,0,-66.0047	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:299:156,142:156:5584:142:5047:-364.301,0,-412.616	1/1:79:0,79:0:0:79:2824:-254.399,-23.7814,0	0/1:112:58,54:58:2076:54:1936:-140.801,0,-153.395	0/1:137:76,61:76:2728:61:2178:-155.044,0,-204.522	1/1:116:0,116:0:0:116:4147:-373.413,-34.9195,0	0/1:95:57,38:57:2024:38:1355:-93.6519,0,-153.835	0/1:169:83,86:83:2980:86:3058:-224.573,0,-217.558	0/1:287:168,119:168:6028:119:4263:-297.444,0,-456.227	1/1:155:0,155:0:0:155:5533:-498.088,-46.6597,0	1/1:183:0,183:0:0:183:6524:-587.24,-55.0885,0	1/1:190:0,190:0:0:190:6775:-609.824,-57.1957,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:303:0,303:0:0:303:10773:-969.481,-91.2121,0	0/1:67:28,39:28:1004:39:1386:-104.869,0,-70.5069	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:146:66,80:66:2376:80:2829:-210.886,0,-170.147	1/1:97:1,96:1:36:96:3423:-304.67,-25.6016,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:76:48,28:48:1724:28:986:-66.1733,0,-132.567	1/1:179:0,179:0:0:179:6392:-575.367,-53.8844,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:232:122,110:122:4372:110:3916:-282.794,0,-323.814	1/1:226:3,223:3:108:223:7955:-705.9,-57.9576,0	0/1:109:66,43:66:2364:43:1540:-106.081,0,-180.206	1/1:216:0,216:0:0:216:7726:-695.364,-65.0225,0	0/1:245:174,71:174:6256:71:2544:-155.458,0,-489.379	0/1:98:53,45:53:1896:45:1608:-115.509,0,-141.417	1/1:48:0,48:0:0:48:1711:-154.266,-14.4494,0	1/1:106:0,106:0:0:106:3792:-341.47,-31.9092,0	1/1:109:0,109:0:0:109:3900:-351.194,-32.8123,0	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	1/1:97:0,97:0:0:97:3446:-310.351,-29.1999,0	0/1:136:67,69:67:2408:69:2480:-182.513,0,-176.036	1/1:201:0,201:0:0:201:7124:-641.225,-60.507,0	1/1:179:0,178:0:0:178:6369:-573.056,-53.5833,0	0/1:185:98,87:98:3516:87:3104:-223.898,0,-260.959	0/1:133:58,75:58:2076:75:2665:-200.057,0,-147.074	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:143:0,143:0:0:143:5097:-458.873,-43.0473,0	1/1:107:0,107:0:0:107:3824:-344.346,-32.2102,0	1/1:289:0,289:0:0:289:10298:-926.663,-86.9977,0	1/1:129:0,129:0:0:129:4632:-417.033,-38.8329,0	0/1:89:50,39:50:1796:39:1384:-98.0672,0,-135.131	0/1:135:76,59:76:2736:59:2112:-149.71,0,-205.843	1/1:219:0,219:0:0:219:7814:-702.906,-65.9256,0	0/1:72:38,34:38:1360:34:1200:-86.6277,0,-101.026	0/1:89:42,47:42:1508:47:1680:-124.695,0,-109.223	1/1:95:0,95:0:0:95:3388:-305.1,-28.5979,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:111:51,60:51:1828:60:2144:-159.679,0,-131.387	0/1:131:91,40:91:3248:40:1436:-90.1004,0,-253.107	1/1:160:0,160:0:0:160:5716:-514.556,-48.1648,0	1/1:160:0,160:0:0:160:5727:-515.547,-48.1648,0
chr04	12975357	.	C	T	24523	PASS	AB=0.47422;ABP=21.1478;AC=43;AF=0.231183;AN=186;AO=1509;CIGAR=1X;DP=6093;DPB=6093;DPRA=1.39672;EPP=3279.76;EPPR=9948.35;GTI=0;LEN=1;MEANALT=1.07843;MQM=59.9099;MQMR=59.9924;NS=93;NUMALT=1;ODDS=2.56867;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53997;QR=164165;RO=4580;RPL=0;RPP=3279.76;RPPR=9948.35;RPR=1509;RUN=1;SAF=1509;SAP=3279.76;SAR=0;SRF=4580;SRP=9948.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:21,13:21:752:13:464:-31.8609,0,-57.7712	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:219:219,0:219:7872:0:0:0,-65.9256,-708.502	0/0:35:33,2:33:1180:2:72:0,-3.69933,-99.6713	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:64:39,25:39:1404:25:888:-60.9725,0,-107.389	0/0:100:98,2:98:3516:2:72:0,-23.2663,-309.813	0/1:99:49,50:49:1752:50:1796:-132.12,0,-128.162	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:78:78,0:78:2787:0:0:0,-23.4803,-251.07	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:50:31,19:31:1112:19:680:-46.4777,0,-85.3398	0/1:36:21,15:21:756:15:540:-38.0948,0,-57.5301	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:30:20,10:20:720:10:360:-23.7134,0,-56.0979	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:105:52,53:52:1860:53:1881:-137.959,0,-136.071	0/1:133:72,61:72:2580:61:2188:-157.149,0,-192.412	0/1:91:27,64:27:968:64:2300:-179.83,0,-60.0436	0/1:98:44,54:44:1567:54:1940:-145.374,0,-111.82	0/0:41:38,3:38:1356:3:108:0,-2.2755,-112.274	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/1:182:106,75:106:3812:75:2676:-186.24,0,-288.393	0/1:208:126,82:126:4516:82:2920:-200.42,0,-343.993	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:208:103,105:103:3696:105:3732:-273.466,0,-270.227	0/1:81:43,37:43:1540:37:1328:-95.38,0,-114.451	0/0:92:92,0:92:3281:0:0:0,-27.6948,-295.509	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:157:157,0:157:5636:0:0:0,-47.2617,-507.359	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:15:6,9:6:207:9:324:-24.9904,0,-14.4514	.:.:.:.:.:.:.:.	0/1:103:58,44:58:2072:44:1584:-111.787,0,-155.686	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:118:57,61:57:2022:61:2181:-161.005,0,-146.728	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.758	0/1:109:60,49:60:2152:49:1764:-126.231,0,-161.135	0/1:100:59,41:59:2116:41:1449:-100.601,0,-160.606	0/1:184:131,53:131:4704:53:1900:-115.781,0,-368.129	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:72:34,38:34:1224:38:1352:-100.298,0,-88.7929	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:40:21,19:21:748:19:684:-49.8491,0,-55.6041	0/0:71:69,2:69:2480:2:72:0,-14.5364,-216.616	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:212:103,109:103:3700:109:3887:-286.207,0,-269.383	0/0:113:107,6:107:3844:6:216:0,-14.2259,-326.364	0/1:49:25,24:25:892:24:864:-63.3275,0,-65.8492	0/0:87:86,1:86:3080:1:36:0,-22.5913,-273.83	0/1:93:45,48:45:1616:48:1724:-127.45,0,-117.734	0/1:65:30,35:30:1080:35:1256:-93.775,0,-77.9463	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:16:5,11:5:180:11:392:-30.7897,0,-11.7356	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/1:74:25,49:25:900:49:1764:-136.75,0,-59.0448	0/0:92:91,1:91:3260:1:36:0,-24.0965,-290.022	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.8	0/1:85:48,37:48:1712:37:1332:-94.5948,0,-128.778	0/1:54:18,35:18:648:35:1248:-96.3096,0,-42.3375	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:91:91,0:91:3257:0:0:0,-27.3937,-293.349	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:152:150,2:150:5372:2:72:0,-38.9198,-476.775	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:53:30,23:30:1072:23:824:-58.5264,0,-80.8379	0/1:33:20,13:20:720:13:453:-31.1656,0,-55.1948	0/0:106:106,0:106:3803:0:0:0,-31.9092,-342.464	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:60:33,27:33:1171:27:968:-69.3756,0,-87.6349	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:32:18,14:18:644:14:504:-36.0651,0,-48.6576	0/1:52:20,32:20:720:32:1150:-88.1556,0,-49.4752	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.646	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.974
chr04	13028081	.	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chr04	13405165	.	T	C	39416.1	PASS	AB=0.508319;ABP=5.75601;AC=45;AF=0.241935;AN=186;AO=2340;CIGAR=1X;DP=8869;DPB=8869;DPRA=1.52877;EPP=5075.57;EPPR=14117.6;GTI=3;LEN=1;MEANALT=1.07843;MQM=59.9889;MQMR=59.9966;NS=93;NUMALT=1;ODDS=1.32378;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83502;QR=233501;RO=6524;RPL=2339;RPP=5075.57;RPPR=14126.3;RPR=1;RUN=1;SAF=0;SAP=5084.26;SAR=2340;SRF=1;SRP=14161;SRR=6523;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:79:49,30:49:1760:30:1080:-73.7319,0,-134.903	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.61	0/0:245:244,1:244:8772:1:36:0,-70.1541,-785.865	0/0:133:133,0:133:4757:0:0:0,-40.037,-428.286	0/0:82:82,0:82:2917:0:0:0,-24.6845,-262.764	0/1:109:58,51:58:2084:51:1828:-131.989,0,-155.018	0/0:103:103,0:103:3661:0:0:0,-31.0061,-329.694	0/1:116:59,57:59:2108:57:2031:-148.142,0,-155.07	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.278	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:51:29,22:29:1044:22:782:-55.3507,0,-78.9223	0/1:30:9,21:9:324:21:752:-58.9754,0,-20.475	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:24:16,8:16:576:8:284:-18.6786,0,-44.9503	0/1:24:7,17:7:252:17:567:-44.1168,0,-15.8042	0/1:170:98,72:98:3497:72:2588:-181.993,0,-263.765	0/1:137:65,72:65:2328:72:2571:-190.399,0,-168.539	0/1:241:93,147:93:3340:147:5247:-399.76,0,-228.209	0/1:162:78,84:78:2808:84:3020:-223.263,0,-204.192	0/0:89:81,8:81:2897:8:273:0,-1.89149,-236.064	0/0:98:98,0:98:3497:0:0:0,-29.5009,-314.94	0/1:338:160,178:160:5690:178:6332:-468.222,0,-410.471	0/1:190:97,92:97:3484:92:3274:-237.623,0,-256.516	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:333:166,167:166:5952:167:5945:-434.91,0,-435.543	0/1:159:75,84:75:2688:84:3001:-222.456,0,-194.301	0/0:144:143,1:143:5136:1:36:0,-39.75,-458.781	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:203:203,0:203:7285:0:0:0,-61.1091,-655.697	0/0:203:203,0:203:7257:0:0:0,-61.1091,-653.177	0/1:39:22,17:22:788:17:608:-43.3119,0,-59.5046	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:257:144,113:144:5157:113:4051:-287.412,0,-386.904	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/1:229:116,111:116:4164:111:3952:-287.178,0,-306.248	0/1:54:25,29:25:900:29:1044:-78.0192,0,-65.0654	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:121:77,44:77:2753:44:1561:-104.355,0,-211.586	0/1:96:49,47:49:1745:47:1663:-121.058,0,-128.433	0/1:225:119,106:119:4280:106:3781:-272.756,0,-317.644	0/0:127:127,0:127:4545:0:0:0,-38.2308,-409.215	0/0:117:116,1:116:4153:1:36:0,-31.6222,-370.353	0/0:185:185,0:185:6641:0:0:0,-55.6905,-597.764	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/1:118:59,58:59:2116:58:2076:-151.53,0,-155.128	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:167:83,84:83:2941:84:3016:-221.398,0,-214.652	0/0:67:67,0:67:2381:0:0:0,-20.169,-214.546	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:81:46,35:46:1652:35:1247:-88.1506,0,-124.585	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	.:.:.:.:.:.:.:.	0/1:99:39,60:39:1385:60:2160:-164.865,0,-95.1449	0/0:183:182,1:182:6486:1:36:0,-51.4902,-580.227	0/1:46:25,21:25:896:21:756:-54.5198,0,-67.113	0/0:114:114,0:114:4081:0:0:0,-34.3174,-367.47	0/1:179:78,101:78:2804:101:3592:-269.601,0,-198.715	0/1:108:30,78:30:1076:78:2777:-217.659,0,-64.6416	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:58:58,0:58:2050:0:0:0,-17.4597,-184.768	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:167:167,0:167:5957:0:0:0,-50.272,-536.238	0/1:38:22,16:22:792:16:576:-40.7358,0,-60.1665	0/0:160:159,1:159:5692:1:32:0,-44.9655,-509.199	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.444	0/1:174:81,93:81:2904:93:3319:-246.548,0,-209.216	0/1:56:24,32:24:860:32:1148:-86.7722,0,-60.8642	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:114:114,0:114:4069:0:0:0,-34.3174,-366.396	0/0:142:142,0:142:5078:0:0:0,-42.7463,-457.161	0/0:254:253,1:253:9054:1:36:0,-72.8633,-811.234	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:50:28,22:28:1000:22:784:-55.8324,0,-75.2639	0/1:46:19,27:19:684:27:968:-73.59,0,-48.0429	0/0:117:117,0:117:4189:0:0:0,-35.2205,-377.19	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:58:29,29:29:1025:29:1031:-75.6429,0,-75.101	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:44:19,25:19:684:25:900:-68.0757,0,-48.645	0/1:56:15,41:15:540:41:1449:-113.834,0,-32.0789	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:97:97,0:97:3469:0:0:0,-29.1999,-312.42
chr04	13484242	.	C	T	130315	PASS	AB=0.496252;ABP=3.33586;AC=143;AF=0.760638;AN=188;AO=4793;CIGAR=1X;DP=6153;DPB=6153;DPRA=13.2215;EPP=19.538;EPPR=13.5092;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.962;MQMR=59.9823;NS=94;NUMALT=1;ODDS=1.58893;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170652;QR=47949;RO=1357;RPL=0;RPP=10410.9;RPPR=2932.35;RPR=4793;RUN=1;SAF=2492;SAP=19.538;SAR=2301;SRF=721;SRP=14.5718;SRR=636;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:19,7:19:676:7:239:-14.0159,0,-53.3412	1/1:52:0,52:0:0:52:1851:-166.866,-15.6536,0	1/1:60:0,60:0:0:60:2140:-192.868,-18.0618,0	1/1:90:0,89:0:0:89:3154:-283.726,-26.7917,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:75:40,35:40:1396:35:1256:-90.768,0,-103.357	1/1:93:0,93:0:0:93:3310:-298.12,-27.9958,0	0/1:60:22,38:22:762:38:1356:-104.279,0,-50.8358	1/1:36:1,35:1:36:35:1252:-109.387,-7.23881,0	1/1:90:0,90:0:0:90:3194:-287.682,-27.0927,0	1/1:146:1,145:1:27:145:5136:-459.686,-41.2506,0	1/1:126:0,126:0:0:126:4503:-405.439,-37.9298,0	1/1:141:0,141:0:0:141:5003:-450.42,-42.4452,0	0/1:108:56,52:56:1982:52:1835:-132.917,0,-146.142	0/1:97:46,51:46:1627:51:1819:-134.791,0,-117.518	1/1:93:1,92:1:36:92:3284:-292.182,-24.3975,0	0/1:92:53,39:53:1876:39:1388:-97.5242,0,-141.424	0/1:69:40,29:40:1432:29:1044:-73.5037,0,-108.407	0/1:60:22,38:22:772:38:1360:-104.639,0,-51.7395	0/1:77:44,33:44:1550:33:1171:-82.5174,0,-116.611	0/1:15:8,7:8:284:7:248:-18.1487,0,-21.3879	0/1:34:20,14:20:712:14:500:-35.1012,0,-54.1716	1/1:31:1,30:1:36:30:1067:-92.7421,-5.73366,0	1/1:54:2,52:2:68:52:1847:-160.052,-9.79791,0	0/1:93:36,57:36:1256:57:2040:-155.807,0,-85.3437	0/1:115:65,50:65:2303:50:1774:-125.323,0,-172.908	1/1:62:0,62:0:0:62:2215:-199.614,-18.6639,0	0/1:76:37,38:37:1302:38:1344:-98.32,0,-94.5429	0/1:46:27,19:27:947:19:672:-46.9595,0,-71.6964	1/1:48:0,48:0:0:48:1707:-153.914,-14.4494,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:9:2,7:2:72:7:248:-19.319,0,-4.12745	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:294:0,294:0:0:294:10500:-944.917,-88.5028,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:90:44,46:44:1551:46:1624:-119.354,0,-112.788	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:60:31,29:31:1091:29:1020:-74.0504,0,-80.4369	1/1:83:0,83:0:0:83:2902:-261.412,-24.9855,0	0/1:65:30,35:30:1060:35:1252:-93.4181,0,-76.1443	0/1:121:59,62:59:2072:62:2232:-164.719,0,-150.324	1/1:115:0,115:0:0:115:4056:-365.231,-34.6185,0	0/1:32:16,16:16:563:16:568:-41.8189,0,-41.3662	0/1:40:16,24:16:568:24:860:-65.6806,0,-39.4107	0/1:53:26,27:26:920:27:968:-71.4251,0,-67.1625	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:39:1,38:1:36:38:1335:-116.851,-8.1419,0	0/1:42:20,22:20:720:22:776:-57.5183,0,-52.4855	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:62:31,31:31:1100:31:1108:-81.3313,0,-80.6464	1/1:29:0,29:0:0:29:1028:-92.8315,-8.72987,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	0/1:33:16,17:16:572:17:612:-45.4794,0,-41.8794	1/1:117:0,117:0:0:117:4153:-373.953,-35.2205,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:38:16,22:16:567:22:772:-58.3621,0,-39.9216	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	0/1:45:24,21:24:860:21:744:-53.738,0,-64.1755	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:99:61,38:61:2146:38:1356:-92.5385,0,-163.605	0/1:59:35,24:35:1244:24:841:-58.2456,0,-94.5039	1/1:73:0,72:0:0:72:2581:-232.217,-21.6742,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:110:0,110:0:0:110:3928:-353.714,-33.1133,0	0/1:14:5,9:5:176:9:324:-25.2914,0,-11.9706	1/1:37:0,37:0:0:37:1323:-119.371,-11.1381,0	0/1:42:28,14:28:1004:14:504:-33.0548,0,-78.0326	1/1:104:1,103:1:36:103:3665:-326.455,-27.7088,0	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	0/1:61:30,31:30:1051:31:1108:-81.6682,0,-76.5368	0/1:59:34,25:34:1196:25:900:-63.5602,0,-90.1837	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:36:0,36:0:0:36:1259:-113.612,-10.8371,0	1/1:60:0,60:0:0:60:2146:-193.408,-18.0618,0	1/1:69:0,69:0:0:69:2454:-221.059,-20.7711,0	1/1:141:1,140:1:36:140:5008:-447.269,-38.847,0	0/1:128:63,65:63:2219:65:2314:-169.988,0,-161.415	0/1:100:48,52:48:1716:52:1864:-137.936,0,-124.623	1/1:202:0,202:0:0:202:7189:-647.07,-60.8081,0	0/1:48:18,30:18:640:30:1057:-80.9537,0,-43.4799	0/1:94:45,49:45:1583:49:1755:-129.937,0,-114.463	1/1:99:0,99:0:0:99:3539:-318.719,-29.802,0	1/1:79:0,79:0:0:79:2823:-254.309,-23.7814,0	0/1:118:43,75:43:1523:75:2679:-205.834,0,-101.841	0/1:93:60,33:60:2115:33:1166:-77.2498,0,-162.623	1/1:41:0,41:0:0:41:1445:-130.344,-12.3422,0	1/1:195:0,195:0:0:195:6921:-622.956,-58.7009,0
chr04	14089862	.	C	T	11702	PASS	AB=0.474234;ABP=11.8506;AC=43;AF=0.231183;AN=186;AO=730;CIGAR=1X;DP=3044;DPB=3044;DPRA=1.2158;EPP=1588.19;EPPR=5023.45;GTI=0;LEN=1;MEANALT=1.02174;MQM=59.9329;MQMR=59.9775;NS=93;NUMALT=1;ODDS=0.451097;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26108;QR=82845;RO=2312;RPL=0;RPP=1588.19;RPPR=5023.45;RPR=730;RUN=1;SAF=730;SAP=1588.19;SAR=0;SRF=2312;SRP=5023.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:4,8:4:144:8:273:-21.2878,0,-9.70126	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/1:27:9,18:9:324:18:632:-49.0789,0,-21.378	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:17:8,9:8:280:9:324:-24.3883,0,-20.4218	0/1:51:31,20:31:1112:20:716:-49.4152,0,-85.0388	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.6223	0/1:57:30,27:30:1072:27:968:-70.2787,0,-78.855	0/0:33:32,1:32:1144:1:36:0,-6.33571,-99.6712	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:118:59,59:59:2116:59:2124:-155.907,0,-155.187	0/1:78:43,35:43:1536:35:1248:-89.1445,0,-115.053	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:80:42,38:42:1512:38:1362:-98.798,0,-112.292	0/1:130:70,60:70:2512:60:2148:-154.454,0,-187.198	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	.:.:.:.:.:.:.:.	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:53:33,20:33:1188:20:712:-48.4521,0,-91.274	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:44:24,20:24:864:20:720:-51.8835,0,-64.8372	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:47:28,19:28:1000:19:680:-47.3808,0,-76.167	0/1:49:27,22:27:964:22:788:-56.4943,0,-72.3217	0/1:58:40,18:40:1432:18:640:-40.4696,0,-111.718	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:54:33,21:33:1184:21:756:-52.1116,0,-90.6127	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/1:6:1,5:1:36:5:167:-13.5514,0,-1.79209	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9907	0/0:60:59,1:59:2112:1:36:0,-14.4635,-186.751	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:55:21,34:21:752:34:1216:-93.1899,0,-51.4496	0/0:91:91,0:91:3248:0:0:0,-27.3937,-292.542	0/1:32:12,20:12:424:20:720:-55.4958,0,-28.8635	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:39:22,17:22:788:17:608:-43.3119,0,-59.5046	0/1:72:24,48:24:849:48:1720:-132.921,0,-55.0537	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:27:10,17:10:360:17:608:-46.9242,0,-24.6165	0/0:58:57,0:57:2048:0:0:0,-17.1587,-184.219	0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.747	0/1:44:20,24:20:712:24:860:-64.4765,0,-51.1613	0/1:46:23,22:23:820:22:788:-57.3387,0,-60.2165	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/0:28:27,1:27:968:1:36:0,-4.83056,-83.8391	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:18:7,11:7:252:11:388:-29.8388,0,-17.6104	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:40:24,16:24:864:16:567:-39.2957,0,-66.0414	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:37:17,20:17:608:20:707:-52.8165,0,-43.9139	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604
chr04	14096347	.	A	G	177150	PASS	AB=0.487119;ABP=10.3943;AC=142;AF=0.763441;AN=186;AO=8169;CIGAR=1X;DP=10817;DPB=10817;DPRA=58.7772;EPP=16875.3;EPPR=5438.12;GTI=1;LEN=1;MEANALT=1.02174;MQM=58.5862;MQMR=59.8681;NS=93;NUMALT=1;ODDS=0.160388;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=291861;QR=94534;RO=2645;RPL=85;RPP=17011.1;RPPR=5531.46;RPR=8084;RUN=1;SAF=8153;SAP=17603.1;SAR=16;SRF=2634;SRP=5651.41;SRR=11;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:11,11:11:392:11:396:-29.3509,0,-28.9974	1/1:152:0,152:0:0:152:5413:-486.515,-45.7566,0	1/1:150:0,150:0:0:150:5350:-481.095,-45.1545,0	1/1:217:5,212:5:180:212:7579:-663.976,-48.7714,0	1/1:88:0,88:0:0:88:3137:-282.443,-26.4906,0	1/1:28:0,28:0:0:28:1002:-90.3274,-8.42884,0	0/1:144:61,83:61:2196:83:2971:-224.211,0,-154.557	1/1:223:1,221:1:36:221:7846:-701.231,-63.5902,0	0/1:51:19,32:19:684:32:1140:-87.2447,0,-46.5378	1/1:139:0,139:0:0:139:4980:-448.163,-41.8432,0	1/1:138:0,138:0:0:138:4955:-445.317,-41.5421,0	1/1:92:0,92:0:0:92:3288:-295.738,-27.6948,0	1/1:73:0,73:0:0:73:2624:-236.193,-21.9752,0	1/1:113:0,113:0:0:113:4056:-364.712,-34.0164,0	0/1:80:46,34:46:1633:34:1220:-85.611,0,-123.174	0/1:90:43,47:43:1514:47:1660:-122.534,0,-109.448	1/1:79:0,79:0:0:79:2835:-255.025,-23.7814,0	0/1:61:26,35:26:936:35:1260:-95.3014,0,-66.1966	0/1:64:34,30:34:1209:30:1080:-78.1497,0,-89.8288	0/1:269:136,133:136:4892:133:4731:-344.5,0,-359.452	0/1:169:86,83:86:3092:83:2973:-216.761,0,-227.633	0/1:124:94,30:94:3342:30:1080:-60.158,0,-263.668	0/1:79:40,39:40:1421:39:1404:-102.394,0,-104.404	1/1:99:3,96:3:108:96:3411:-295.083,-19.7268,0	1/1:28:0,28:0:0:28:1004:-90.6028,-8.42884,0	0/1:389:203,186:203:7277:186:6643:-480.48,0,-537.849	0/1:277:148,129:148:5283:129:4625:-332.916,0,-392.214	1/1:41:0,41:0:0:41:1461:-131.783,-12.3422,0	0/1:246:129,117:129:4624:117:4185:-302.639,0,-342.25	0/1:128:54,74:54:1914:74:2656:-200.544,0,-133.949	1/1:150:0,150:0:0:150:5356:-481.406,-45.1545,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:14:4,10:4:144:10:360:-28.529,0,-9.0992	1/1:4:0,4:0:0:4:135:-12.4796,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7835,-1.80618,0	1/1:222:0,222:0:0:222:7926:-713.077,-66.8287,0	1/1:215:0,215:0:0:215:7705:-693.086,-64.7215,0	0/1:106:59,47:59:2124:47:1657:-117.291,0,-159.518	.:.:.:.:.:.:.:.	0/1:163:75,88:75:2681:88:3130:-232.528,0,-192.465	1/1:57:0,57:0:0:57:2048:-184.499,-17.1587,0	0/1:162:92,70:92:3289:70:2500:-175.574,0,-247.461	0/1:89:40,49:40:1425:49:1760:-131.63,0,-101.754	1/1:72:0,72:0:0:72:2550:-229.717,-21.6742,0	0/1:127:59,68:59:2101:68:2424:-180.15,0,-151.127	0/1:167:74,93:74:2660:93:3304:-246.793,0,-189.343	0/1:216:102,114:102:3672:114:4058:-300.248,0,-265.631	1/1:93:0,93:0:0:93:3314:-298.003,-27.9958,0	1/1:182:0,182:0:0:182:6533:-585.92,-54.7875,0	1/1:181:0,181:0:0:181:6465:-581.785,-54.4864,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:174:0,174:0:0:174:6236:-560.431,-52.3792,0	0/1:41:18,23:18:648:23:828:-61.827,0,-46.3097	1/1:15:0,15:0:0:15:536:-48.4905,-4.51545,0	0/1:141:59,82:59:2124:82:2892:-217.384,0,-148.938	1/1:56:0,56:0:0:56:2012:-180.878,-16.8577,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:105:79,26:79:2802:26:936:-52.8614,0,-220.81	1/1:143:1,142:1:36:142:5081:-453.454,-39.449,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:197:85,112:85:3015:112:3950:-295.93,0,-212.266	1/1:253:2,249:2:72:249:8924:-795.54,-69.0816,0	0/1:99:50,49:50:1796:49:1735:-126.136,0,-132.114	1/1:113:0,113:0:0:113:4048:-364.42,-34.0164,0	0/1:204:89,115:89:3196:115:4090:-306.705,0,-226.444	0/1:148:87,61:87:3090:61:2175:-151.006,0,-233.761	1/1:56:0,56:0:0:56:2012:-181.306,-16.8577,0	1/1:85:0,85:0:0:85:3040:-273.287,-25.5876,0	1/1:95:0,95:0:0:95:3389:-305.042,-28.5979,0	0/1:23:10,13:10:345:13:453:-34.175,0,-24.4571	1/1:119:0,119:0:0:119:4261:-383.125,-35.8226,0	0/1:39:19,20:19:676:20:720:-53.3675,0,-49.4278	1/1:203:0,203:0:0:203:7203:-647.011,-61.1091,0	1/1:226:0,226:0:0:226:8113:-729.638,-68.0328,0	0/1:166:108,58:108:3865:58:2084:-137.552,0,-297.218	0/1:185:99,86:99:3560:86:3088:-222.232,0,-264.801	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:139:0,139:0:0:139:4970:-447.106,-41.8432,0	1/1:131:1,130:1:36:130:4619:-411.828,-35.9139,0	1/1:317:1,316:1:36:316:11330:-1014.96,-91.8282,0	1/1:123:1,122:1:36:122:4388:-390.237,-33.4284,0	0/1:69:38,31:38:1349:31:1116:-79.9806,0,-100.937	0/1:66:33,33:33:1184:33:1131:-82.1912,0,-86.9888	1/1:141:0,141:0:0:141:5049:-454.309,-42.4452,0	0/1:63:38,25:38:1364:25:891:-61.435,0,-104.086	0/1:99:55,44:55:1961:44:1565:-110.66,0,-146.96	1/1:75:0,75:0:0:75:2700:-242.726,-22.5773,0	1/1:91:0,91:0:0:91:3242:-291.536,-27.3937,0	0/1:152:65,87:65:2276:87:3072:-230.689,0,-159.333	0/1:76:51,25:51:1806:25:900:-58.4143,0,-139.895	1/1:178:0,178:0:0:178:6360:-571.114,-53.5833,0	1/1:107:0,107:0:0:107:3848:-346.423,-32.2102,0
chr04	14098004	.	A	G	52750.7	PASS	AB=0.558864;ABP=68.7105;AC=145;AF=0.771277;AN=188;AO=4218;CIGAR=1X;DP=5194;DPB=5194;DPRA=27.914;EPP=9162.28;EPPR=2115.85;GTI=3;LEN=1;MEANALT=1.03226;MQM=26.463;MQMR=38.2302;NS=94;NUMALT=1;ODDS=3.29523;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150919;QR=34848;RO=973;RPL=0;RPP=9162.28;RPPR=2115.85;RPR=4218;RUN=1;SAF=4218;SAP=9162.28;SAR=0;SRF=973;SRP=2115.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:6,17:6:216:17:604:-29.9834,0,-11.2209	1/1:91:0,91:0:0:91:3249:-192.497,-27.3937,0	1/1:79:0,79:0:0:79:2816:-167.583,-23.7814,0	1/1:87:0,87:0:0:87:3132:-213.117,-26.1896,0	1/1:52:0,52:0:0:52:1868:-118.069,-15.6536,0	1/1:34:0,34:0:0:34:1216:-72.6283,-10.235,0	0/1:57:29,28:29:1040:28:1004:-51.9935,0,-71.8983	1/1:106:0,106:0:0:106:3804:-228.125,-31.9092,0	0/1:67:20,47:20:716:47:1650:-81.5566,0,-37.9355	1/1:87:0,87:0:0:87:3105:-211.883,-26.1896,0	1/1:61:0,61:0:0:61:2179:-148.053,-18.3628,0	1/1:73:0,73:0:0:73:2620:-155.677,-21.9752,0	1/1:64:0,64:0:0:64:2292:-137.314,-19.2659,0	1/1:76:0,76:0:0:76:2715:-175.354,-22.8783,0	0/1:70:36,34:36:1292:34:1224:-61.1981,0,-89.3377	0/1:56:24,32:24:864:32:1136:-57.1967,0,-55.2016	1/1:82:0,82:0:0:82:2940:-173.605,-24.6845,0	0/1:64:35,29:35:1260:29:1036:-41.4132,0,-84.8558	0/1:37:12,25:12:432:25:896:-41.8739,0,-24.5322	0/1:62:21,41:21:752:41:1472:-81.1669,0,-46.6834	0/1:115:39,76:39:1396:76:2724:-139.054,0,-83.7336	0/1:21:10,11:10:360:11:381:-21.7783,0,-25.1641	0/1:25:13,12:13:464:12:432:-22.2989,0,-32.9436	1/1:72:3,69:3:108:69:2472:-147.279,-12.1889,0	1/1:25:0,25:0:0:25:900:-57.6594,-7.52575,0	0/1:84:23,61:23:820:61:2188:-129.178,0,-46.9102	0/1:69:34,35:34:1220:35:1241:-59.478,0,-81.8571	1/1:43:0,43:0:0:43:1536:-96.7276,-12.9443,0	0/1:69:16,53:16:576:53:1900:-116.83,0,-30.0181	0/1:49:14,35:14:500:35:1260:-64.5655,0,-27.8819	1/1:50:0,49:0:0:49:1760:-118.93,-14.7505,0	0/1:6:1,5:1:36:5:176:-9.42565,0,-1.49284	0/1:6:3,3:3:108:3:108:-4.56267,0,-7.22659	1/1:2:0,2:0:0:2:72:-4.50971,-0.60206,0	1/1:11:0,11:0:0:11:392:-24.1967,-3.31133,0	1/1:3:0,3:0:0:3:108:-6.64588,-0.90309,0	1/1:159:0,159:0:0:159:5708:-403.441,-47.8638,0	1/1:57:0,57:0:0:57:2037:-129.238,-17.1587,0	0/1:77:29,48:29:1044:48:1712:-79.0256,0,-62.8669	1/1:6:0,6:0:0:6:212:-14.0217,-1.80618,0	0/1:94:41,53:41:1468:53:1900:-96.438,0,-95.0486	1/1:26:0,26:0:0:26:936:-57.1234,-7.82678,0	0/1:44:18,26:18:648:26:920:-46.7322,0,-41.9726	0/1:82:32,49:32:1148:49:1751:-94.6342,0,-74.8349	1/1:60:0,60:0:0:60:2148:-145.067,-18.0618,0	0/1:22:6,16:6:216:16:572:-35.2426,0,-12.6422	0/1:65:21,44:21:752:44:1580:-74.351,0,-43.1641	0/1:61:20,41:20:708:41:1476:-81.794,0,-41.8468	1/1:48:0,48:0:0:48:1728:-116.954,-14.4494,0	1/1:61:0,61:0:0:61:2184:-149.562,-18.3628,0	1/1:81:0,81:0:0:81:2890:-205.7,-24.3834,0	1/1:4:0,4:0:0:4:144:-10.1239,-1.20412,0	1/1:66:0,66:0:0:66:2360:-139.719,-19.868,0	0/1:8:5,3:5:180:3:108:-5.7195,0,-13.7042	1/1:4:0,4:0:0:4:144:-8.78206,-1.20412,0	0/1:62:35,27:35:1252:27:972:-44.5049,0,-86.0067	1/1:32:0,32:0:0:32:1148:-80.0072,-9.63296,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.65513	1/1:2:0,2:0:0:2:72:-5.51525,-0.60206,0	0/1:37:19,18:19:680:18:636:-29.813,0,-44.3333	1/1:101:1,100:1:36:100:3588:-241.527,-26.9495,0	1/1:9:0,9:0:0:9:305:-20.9419,-2.70927,0	0/1:56:36,20:36:1251:20:720:-35.9744,0,-92.626	1/1:42:1,41:1:36:41:1468:-95.4393,-9.18877,0	0/1:49:18,31:18:633:31:1112:-54.7889,0,-38.7421	1/1:48:0,48:0:0:48:1701:-115.45,-14.4494,0	0/1:63:32,31:32:1152:31:1112:-55.9122,0,-80.5685	0/1:31:21,10:21:756:10:356:-15.3318,0,-56.2429	1/1:30:0,30:0:0:30:1065:-69.3877,-9.0309,0	1/1:62:0,62:0:0:62:2216:-130.648,-18.6639,0	1/1:88:0,88:0:0:88:3164:-225.848,-26.4906,0	0/1:18:6,12:6:216:12:428:-24.1708,0,-13.5198	1/1:28:0,28:0:0:28:1004:-59.5092,-8.42884,0	0/1:49:24,25:24:860:25:900:-39.9626,0,-56.2288	1/1:83:1,81:1:36:81:2893:-181.973,-22.2481,0	1/1:53:0,53:0:0:53:1900:-129.934,-15.9546,0	1/1:32:1,31:1:36:31:1108:-63.624,-6.33394,0	0/1:74:45,29:45:1612:29:1036:-39.5107,0,-110.619	0/1:10:2,8:2:72:8:288:-14.3165,0,-3.25785	1/1:31:0,31:0:0:31:1112:-70.9136,-9.33193,0	1/1:45:0,45:0:0:45:1616:-95.462,-13.5464,0	1/1:108:0,108:0:0:108:3880:-262.63,-32.5112,0	1/1:100:0,100:0:0:100:3557:-240.431,-30.103,0	0/1:54:28,26:28:1004:26:921:-48.0484,0,-69.4691	0/1:99:50,49:50:1792:49:1745:-89.0816,0,-124.426	1/1:148:1,147:1:36:147:5276:-354.039,-41.0979,0	0/1:28:20,8:20:716:8:288:-8.89793,0,-50.5529	0/1:96:39,57:39:1400:57:2036:-92.6231,0,-87.1934	1/1:78:0,78:0:0:78:2804:-166.308,-23.4803,0	1/1:46:1,45:1:36:45:1612:-100.671,-10.4598,0	0/1:62:35,27:35:1260:27:964:-43.5049,0,-88.1272	0/1:62:44,18:44:1580:18:644:-25.2875,0,-116.659	1/1:31:0,31:0:0:31:1078:-73.508,-9.33193,0	1/1:142:0,142:0:0:142:5076:-344.166,-42.7463,0
chr04	14098016	.	C	T	54467	PASS	AB=0.559338;ABP=69.4969;AC=145;AF=0.771277;AN=188;AO=4237;CIGAR=1X;DP=5210;DPB=5210;DPRA=28;EPP=8961.94;EPPR=2048.98;GTI=3;LEN=1;MEANALT=1.03226;MQM=26.455;MQMR=38.2577;NS=94;NUMALT=1;ODDS=3.0529;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151602;QR=34732;RO=970;RPL=27;RPP=8970.51;RPPR=2048.98;RPR=4210;RUN=1;SAF=4236;SAP=9194.86;SAR=1;SRF=970;SRP=2109.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:6,16:6:216:16:568:-27.3811,0,-11.522	1/1:91:0,91:0:0:91:3264:-194.512,-27.3937,0	1/1:77:0,77:0:0:77:2760:-163.433,-23.1793,0	1/1:88:0,88:0:0:88:3148:-215.076,-26.4906,0	1/1:53:0,53:0:0:53:1908:-120.255,-15.9546,0	1/1:34:0,34:0:0:34:1201:-72.2231,-10.235,0	0/1:57:29,28:29:1021:28:989:-51.3478,0,-70.1681	1/1:111:0,110:0:0:110:3927:-235.743,-33.1133,0	0/1:65:20,45:20:720:45:1612:-78.9016,0,-38.6593	1/1:88:0,88:0:0:88:3132:-214.367,-26.4906,0	1/1:65:0,65:0:0:65:2324:-157.01,-19.567,0	1/1:74:0,74:0:0:74:2660:-157.675,-22.2762,0	1/1:64:0,64:0:0:64:2300:-136.313,-19.2659,0	1/1:76:0,76:0:0:76:2728:-175.559,-22.8783,0	0/1:70:36,34:36:1292:34:1224:-61.1981,0,-89.3377	0/1:55:24,31:24:864:31:1112:-55.3462,0,-55.5026	1/1:81:0,81:0:0:81:2896:-171.37,-24.3834,0	0/1:66:35,31:35:1248:31:1112:-45.0835,0,-83.5551	0/1:37:12,25:12:432:25:900:-41.8958,0,-24.5322	0/1:62:21,41:21:756:41:1472:-81.1901,0,-46.9715	0/1:113:39,74:39:1400:74:2637:-135.043,0,-84.5928	0/1:21:10,11:10:360:11:396:-22.5546,0,-25.1641	0/1:26:13,13:13:468:13:468:-24.4604,0,-33.0026	1/1:73:3,69:3:108:69:2460:-147.002,-12.4252,0	1/1:26:0,26:0:0:26:936:-60.1296,-7.82678,0	0/1:83:23,60:23:820:60:2139:-126.882,0,-47.3144	0/1:70:35,35:35:1252:35:1243:-58.8884,0,-84.2643	1/1:43:0,43:0:0:43:1544:-96.8674,-12.9443,0	0/1:69:16,53:16:576:53:1908:-116.006,0,-30.0181	0/1:49:14,35:14:504:35:1244:-64.4367,0,-28.1404	1/1:50:0,50:0:0:50:1792:-121.995,-15.0515,0	0/1:7:1,6:1:36:6:216:-11.4437,0,-1.19181	0/1:6:3,3:3:99:3:108:-4.56267,0,-6.87294	1/1:2:0,2:0:0:2:72:-4.50971,-0.60206,0	1/1:11:0,11:0:0:11:387:-24.0947,-3.31133,0	1/1:3:0,3:0:0:3:104:-6.61118,-0.90309,0	1/1:161:0,161:0:0:161:5772:-409.032,-48.4658,0	1/1:56:0,56:0:0:56:2004:-127.356,-16.8577,0	0/1:78:29,49:29:1044:49:1748:-80.3424,0,-62.5659	1/1:6:0,6:0:0:6:216:-14.0729,-1.80618,0	0/1:92:41,51:41:1464:51:1823:-90.2067,0,-95.3936	1/1:26:0,26:0:0:26:932:-57.0898,-7.82678,0	0/1:42:18,24:18:648:24:860:-42.8799,0,-42.5746	0/1:84:32,52:32:1152:52:1868:-100.551,0,-74.4036	1/1:61:0,61:0:0:61:2192:-148.418,-18.3628,0	0/1:22:6,16:6:212:16:576:-35.3165,0,-12.3268	0/1:63:20,43:20:720:43:1540:-72.8544,0,-41.0183	0/1:63:20,43:20:716:43:1540:-85.9701,0,-41.637	1/1:48:0,48:0:0:48:1720:-116.869,-14.4494,0	1/1:62:0,62:0:0:62:2228:-152.148,-18.6639,0	1/1:80:0,80:0:0:80:2839:-202.644,-24.0824,0	1/1:4:0,4:0:0:4:144:-10.1239,-1.20412,0	1/1:66:0,66:0:0:66:2368:-139.774,-19.868,0	0/1:9:5,4:5:161:4:144:-8.03096,0,-11.793	1/1:4:0,4:0:0:4:144:-8.78206,-1.20412,0	0/1:60:34,26:34:1212:26:936:-42.8042,0,-83.9309	1/1:32:0,32:0:0:32:1148:-80.0072,-9.63296,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.65513	1/1:2:0,2:0:0:2:72:-5.51525,-0.60206,0	0/1:36:18,18:18:648:18:648:-30.2657,0,-42.6299	1/1:105:1,103:1:36:103:3679:-247.61,-28.1278,0	1/1:9:0,9:0:0:9:320:-21.593,-2.70927,0	0/1:55:34,21:34:1216:21:748:-38.9868,0,-89.8864	1/1:41:1,40:1:36:40:1440:-93.7978,-8.88774,0	0/1:48:18,30:18:640:30:1065:-53.0345,0,-39.4703	1/1:47:0,47:0:0:47:1676:-113.022,-14.1484,0	0/1:64:33,31:33:1184:31:1112:-56.3508,0,-82.9486	0/1:30:22,8:22:792:8:288:-10.9434,0,-59.653	1/1:31:1,30:1:36:30:1080:-65.5506,-6.14431,0	1/1:64:0,64:0:0:64:2292:-134.782,-19.2659,0	1/1:92:0,92:0:0:92:3301:-235.481,-27.6948,0	0/1:18:6,12:6:216:12:428:-24.1708,0,-13.5198	1/1:27:0,27:0:0:27:960:-57.3135,-8.12781,0	0/1:49:24,25:24:864:25:888:-39.8618,0,-56.4499	1/1:82:1,81:1:32:81:2855:-180.776,-22.1036,0	1/1:52:0,52:0:0:52:1872:-127.755,-15.6536,0	1/1:32:1,31:1:36:31:1116:-63.6796,-6.33394,0	0/1:76:45,31:45:1612:31:1101:-43.5666,0,-110.117	0/1:10:2,8:2:72:8:284:-14.2825,0,-3.25785	1/1:32:1,31:1:36:31:1108:-67.088,-6.44534,0	1/1:47:0,47:0:0:47:1684:-99.3543,-14.1484,0	1/1:108:0,108:0:0:108:3857:-262.416,-32.5112,0	1/1:100:0,100:0:0:100:3569:-240.956,-30.103,0	0/1:54:28,26:28:999:26:936:-48.5339,0,-69.1691	0/1:98:50,48:50:1796:48:1711:-86.597,0,-125.014	1/1:149:0,149:0:0:149:5340:-363.287,-44.8535,0	0/1:27:19,8:19:680:8:279:-9.06265,0,-48.1728	0/1:96:39,57:39:1396:57:2044:-92.6902,0,-86.9728	1/1:78:0,78:0:0:78:2800:-166.122,-23.4803,0	1/1:45:1,44:1:36:44:1571:-98.6076,-10.3587,0	0/1:60:34,26:34:1216:26:936:-41.2974,0,-85.2497	0/1:62:44,18:44:1580:18:648:-25.3614,0,-116.885	1/1:31:0,31:0:0:31:1108:-74.2165,-9.33193,0	1/1:144:0,144:0:0:144:5153:-348.836,-43.3483,0
chr04	14099540	.	C	T	111337	PASS	AB=0.460072;ABP=56.7657;AC=140;AF=0.752688;AN=186;AO=5362;CIGAR=1X;DP=7475;DPB=7475;DPRA=16.2391;EPP=11646.4;EPPR=4589.16;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.9838;MQMR=59.8717;NS=93;NUMALT=1;ODDS=1.35074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191458;QR=74794;RO=2112;RPL=5362;RPP=11646.4;RPPR=4589.16;RPR=0;RUN=1;SAF=5362;SAP=11646.4;SAR=0;SRF=2112;SRP=4589.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:46,40:46:1640:40:1412:-101.486,0,-121.997	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:197:1,196:1:36:196:7005:-626.87,-55.7046,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:50:0,50:0:0:50:1791:-161.472,-15.0515,0	0/1:84:39,45:39:1400:45:1611:-119.993,0,-101.012	1/1:99:0,99:0:0:99:3527:-317.64,-29.802,0	0/1:98:45,53:45:1604:53:1900:-141.777,0,-115.148	1/1:54:0,54:0:0:54:1940:-174.831,-16.2556,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	1/1:73:0,73:0:0:73:2608:-234.968,-21.9752,0	1/1:44:1,43:1:36:43:1531:-134.484,-9.64705,0	0/1:41:13,28:13:468:28:1008:-78.6941,0,-30.1174	0/1:49:25,24:25:900:24:856:-62.6106,0,-66.5705	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:29:15,14:15:536:14:500:-36.6063,0,-39.8449	0/1:39:19,20:19:676:20:720:-53.3886,0,-49.4269	0/1:148:83,65:83:2924:65:2332:-165.587,0,-218.842	0/1:171:105,66:105:3717:66:2347:-160.013,0,-283.257	0/1:183:133,50:133:4700:50:1781:-105.482,0,-367.296	0/1:99:48,51:48:1677:51:1815:-133.829,0,-121.412	1/1:64:2,62:2:72:62:2206:-191.968,-12.4292,0	1/1:79:0,79:0:0:79:2820:-254.04,-23.7814,0	0/1:189:96,93:96:3411:93:3303:-240.595,0,-250.308	0/1:161:100,61:100:3508:61:2179:-147.91,0,-266.104	1/1:33:0,33:0:0:33:1170:-105.606,-9.93399,0	0/1:273:145,128:145:5114:128:4592:-331.262,0,-378.221	0/1:111:51,60:51:1781:60:2139:-159.363,0,-127.154	1/1:84:0,84:0:0:84:2973:-267.801,-25.2865,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	.:.:.:.:.:.:.:.	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:23:2,21:2:72:21:752:-61.1695,-0.0869676,0	1/1:160:0,160:0:0:160:5740:-516.714,-48.1648,0	1/1:122:0,122:0:0:122:4360:-392.575,-36.7257,0	0/1:43:17,26:17:612:26:919:-70.0819,0,-42.4691	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:107:52,55:52:1860:55:1980:-146.264,0,-135.468	1/1:42:0,42:0:0:42:1491:-134.484,-12.6433,0	0/1:134:58,76:58:2044:76:2701:-202.995,0,-143.892	0/1:63:37,26:37:1289:26:928:-64.873,0,-97.3433	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:82:23,59:23:820:59:2116:-166.024,0,-49.4371	0/1:108:51,57:51:1820:57:2040:-151.361,0,-131.567	0/1:158:84,74:84:2933:74:2620:-188.484,0,-216.639	1/1:108:0,108:0:0:108:3801:-342.286,-32.5112,0	1/1:106:0,105:0:0:105:3780:-340.037,-31.6082,0	1/1:86:1,85:1:36:85:3044:-270.591,-22.2903,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:97:0,97:0:0:97:3459:-311.523,-29.1999,0	0/1:68:32,36:32:1136:36:1279:-94.9424,0,-82.0789	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:96:46,50:46:1652:50:1777:-131.312,0,-120.059	1/1:46:0,46:0:0:46:1647:-148.518,-13.8474,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/1:75:49,26:49:1730:26:923:-60.7737,0,-133.405	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:9:0,9:0:0:9:320:-29.1419,-2.70927,0	0/1:131:69,62:69:2420:62:2228:-161.349,0,-178.592	1/1:150:3,147:3:108:147:5243:-461.932,-35.0793,0	0/1:68:34,34:34:1187:34:1224:-89.997,0,-86.664	1/1:91:1,90:1:36:90:3215:-285.974,-23.7955,0	0/1:145:102,43:102:3608:43:1527:-94.073,0,-281.259	0/1:139:98,41:98:3475:41:1472:-90.933,0,-271.116	1/1:33:0,33:0:0:33:1184:-106.31,-9.93399,0	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:27:15,12:15:528:12:424:-30.3686,0,-39.7236	1/1:150:0,150:0:0:150:5344:-481.094,-45.1545,0	0/1:92:42,50:42:1512:50:1792:-133.868,0,-108.679	1/1:125:0,125:0:0:125:4458:-401.391,-37.6288,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:134:77,57:77:2756:57:2048:-144.254,0,-207.936	0/1:67:35,32:35:1252:32:1148:-83.4608,0,-92.8161	0/1:16:13,3:13:464:3:108:-5.25869,0,-37.281	1/1:88:0,88:0:0:88:3144:-283.186,-26.4906,0	1/1:98:0,98:0:0:98:3482:-313.59,-29.5009,0	1/1:197:0,197:0:0:197:7025:-632.314,-59.3029,0	1/1:42:0,42:0:0:42:1492:-134.575,-12.6433,0	0/1:61:32,29:32:1133:29:1036:-75.1911,0,-83.9126	0/1:35:19,16:19:676:16:563:-40.4631,0,-50.6319	1/1:113:0,113:0:0:113:4060:-365.586,-34.0164,0	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0765	0/1:36:13,23:13:464:23:828:-64.007,0,-31.2457	1/1:56:0,56:0:0:56:1991:-179.464,-16.8577,0	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	0/1:82:39,43:39:1374:43:1513:-111.776,0,-99.2727	0/1:86:62,24:62:2197:24:852:-51.1118,0,-172.104	1/1:91:0,91:0:0:91:3211:-289.213,-27.3937,0	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0
chr04	14262740	.	C	T	18581.9	PASS	AB=0.448094;ABP=65.0026;AC=44;AF=0.236559;AN=186;AO=1195;CIGAR=1X;DP=5908;DPB=5908;DPRA=0.930544;EPP=2597.92;EPPR=10237.2;GTI=2;LEN=1;MEANALT=1;MQM=59.9665;MQMR=59.9762;NS=93;NUMALT=1;ODDS=3.08972;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42353;QR=166977;RO=4713;RPL=1195;RPP=2597.92;RPPR=10237.2;RPR=0;RUN=1;SAF=0;SAP=2597.92;SAR=1195;SRF=0;SRP=10237.2;SRR=4713;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:21,19:21:737:19:680:-49.488,0,-54.6094	0/0:52:52,0:52:1833:0:0:0,-15.6536,-165.142	0/0:136:136,0:136:4816:0:0:0,-40.9401,-433.565	0/0:122:122,0:122:4308:0:0:0,-36.7257,-387.895	0/0:31:30,1:30:1050:1:36:0,-5.73365,-91.208	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:102:53,49:53:1832:49:1764:-128.339,0,-134.448	0/1:57:28,29:28:970:29:1029:-75.7624,0,-70.449	0/1:87:37,50:37:1309:50:1754:-131.95,0,-91.9199	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:115:115,0:115:4094:0:0:0,-34.6184,-368.644	0/0:69:69,0:69:2453:0:0:0,-20.7711,-221.023	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/1:45:20,25:20:712:25:885:-66.4202,0,-50.8603	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6621	0/1:31:19,12:19:680:12:432:-29.881,0,-52.1972	0/1:20:13,7:13:464:7:233:-15.2737,0,-36.0769	0/1:77:56,21:56:1970:21:756:-45.1879,0,-154.392	0/1:94:57,37:57:2044:37:1313:-90.1729,0,-155.935	0/1:58:21,37:21:756:37:1316:-101.282,0,-50.9075	0/1:60:25,35:25:900:35:1260:-95.6437,0,-63.2592	0/0:53:49,4:49:1730:4:140:0,-3.01001,-143.036	0/0:90:90,0:90:3190:0:0:0,-27.0927,-287.322	0/1:157:88,69:88:3114:69:2461:-174.481,0,-233.224	0/1:144:75,69:75:2658:69:2468:-178.968,0,-196.115	0/1:26:12,14:12:413:14:504:-37.8713,0,-29.671	0/1:119:67,52:67:2362:52:1840:-130.055,0,-177.013	0/1:75:51,24:51:1820:24:841:-53.4291,0,-141.504	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	.:.:.:.:.:.:.:.	0/1:6:3,3:3:108:3:93:-6.87055,0,-8.26899	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:187:187,0:187:6678:0:0:0,-56.2926,-601.095	0/0:80:79,1:79:2795:1:36:0,-20.4841,-248.188	0/1:48:27,21:27:957:21:741:-52.5622,0,-71.9944	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:57:30,27:30:1068:27:964:-69.9175,0,-79.2734	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:94:58,36:58:2031:36:1247:-84.229,0,-154.76	0/1:40:26,14:26:936:14:489:-32.2977,0,-72.5183	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.981	0/1:77:51,26:51:1809:26:905:-58.5821,0,-139.91	0/1:34:22,12:22:788:12:432:-28.9862,0,-61.0098	0/1:83:38,45:38:1345:45:1597:-119.033,0,-96.3627	0/1:91:50,41:50:1766:41:1406:-99.4335,0,-131.826	0/0:62:62,0:62:2194:0:0:0,-18.6639,-197.722	0/0:137:137,0:137:4878:0:0:0,-41.2411,-439.172	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:38:18,20:18:603:20:705:-52.3336,0,-43.1423	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:88:52,36:52:1834:36:1277:-88.7359,0,-138.846	0/1:45:34,11:34:1201:11:377:-20.7116,0,-94.8473	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:62:35,27:35:1241:27:942:-66.426,0,-93.3286	0/0:116:116,0:116:4122:0:0:0,-34.9195,-371.135	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:85:54,31:54:1869:31:1093:-73.0855,0,-142.892	0/0:106:106,0:106:3763:0:0:0,-31.9092,-338.867	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.78	0/1:107:59,48:59:2090:48:1701:-121.164,0,-156.156	0/1:66:26,40:26:936:40:1434:-109.489,0,-64.6915	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/0:22:22,0:22:739:0:0:0,-6.62266,-66.818	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/0:147:147,0:147:5120:0:0:0,-44.2514,-460.944	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.822	0/0:81:81,0:81:2882:0:0:0,-24.3834,-259.614	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965	0/1:35:23,12:23:809:12:432:-28.6851,0,-62.5923	0/1:72:48,24:48:1701:24:860:-56.0477,0,-131.7	0/1:5:3,2:3:108:2:57:-3.90816,0,-8.57002	0/0:64:64,0:64:2269:0:0:0,-19.2659,-204.471	0/0:79:79,0:79:2772:0:0:0,-23.7814,-249.717	0/0:194:194,0:194:6873:0:0:0,-58.3998,-618.638	0/0:51:51,0:51:1801:0:0:0,-15.3525,-162.37	0/0:80:80,0:80:2835:0:0:0,-24.0824,-255.385	0/1:40:22,18:22:792:18:633:-45.2539,0,-59.5645	0/0:130:128,2:128:4535:2:72:0,-32.2972,-401.48	0/1:18:8,10:8:288:10:352:-26.5997,0,-20.8489	0/1:67:39,28:39:1381:28:992:-69.4248,0,-104.418	0/0:81:81,0:81:2871:0:0:0,-24.3834,-258.623	0/0:35:35,0:35:1226:0:0:0,-10.536,-110.64	0/1:62:32,30:32:1137:30:1080:-78.8494,0,-82.7815	0/1:59:21,38:21:733:38:1360:-104.94,0,-48.5289	0/0:81:81,0:81:2844:0:0:0,-24.3834,-256.194	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721
chr04	14273452	.	C	T	100911	PASS	AB=0.676278;ABP=1697.21;AC=47;AF=0.25;AN=188;AO=4262;CIGAR=1X;DP=9958;DPB=9958;DPRA=1.78128;EPP=9214.45;EPPR=12306.6;GTI=15;LEN=1;MEANALT=1.01786;MQM=59.9927;MQMR=59.9996;NS=94;NUMALT=1;ODDS=0.0119562;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150501;QR=203818;RO=5694;RPL=2010;RPP=32.8484;RPPR=12272;RPR=2252;RUN=1;SAF=2007;SAP=34.3463;SAR=2255;SRF=4;SRP=12332.7;SRR=5690;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:23,45:23:828:45:1595:-123.369,0,-54.3741	0/0:73:72,1:72:2588:1:32:0,-18.7759,-229.969	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:171:170,1:170:6087:1:36:0,-47.8779,-544.333	0/0:42:41,1:41:1476:1:36:0,-9.04498,-129.538	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:194:39,155:39:1396:155:5506:-437.269,0,-67.5393	0/1:178:65,113:65:2336:113:3994:-306.069,0,-156.916	0/1:127:56,71:56:1997:71:2525:-189.27,0,-141.771	0/0:74:71,3:71:2548:3:108:0,-12.201,-219.495	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:87:87,0:87:3113:0:0:0,-26.1896,-280.395	0/0:79:79,0:79:2805:0:0:0,-23.7814,-252.687	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:92:24,68:24:860:68:2406:-189.099,0,-50.0271	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:134:34,100:34:1220:100:3503:-275.141,0,-69.7684	0/1:95:20,75:20:716:75:2623:-207.717,0,-36.1699	0/1:183:40,143:40:1436:143:5001:-395.152,0,-74.4492	0/1:206:79,127:79:2806:127:4461:-339.648,0,-190.765	0/1:105:27,78:27:959:78:2788:-219.553,0,-55.0172	0/1:89:39,50:39:1404:50:1781:-133.779,0,-99.8676	0/1:82:71,11:71:2541:11:392:-10.9356,0,-204.255	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:347:148,199:148:5282:199:7080:-532.804,0,-371.056	0/1:268:91,177:91:3260:177:6223:-479.492,0,-212.944	0/1:67:14,53:14:500:53:1883:-149.579,0,-25.1672	0/1:268:87,181:87:3124:181:6407:-496.041,0,-200.71	0/1:112:52,60:52:1860:60:2118:-157.17,0,-133.964	0/0:77:76,1:76:2697:1:36:0,-19.581,-239.376	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:23:8,15:8:288:15:525:-40.6544,0,-19.3437	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:203:203,0:203:7237:0:0:0,-61.1091,-651.383	0/0:124:122,2:122:4353:2:72:0,-30.491,-385.108	0/1:151:37,114:37:1324:114:4049:-319.143,0,-74.0066	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:159:52,107:52:1868:107:3808:-295.054,0,-120.535	0/1:122:41,81:41:1461:81:2880:-222.71,0,-95.0584	0/1:189:57,132:57:2033:132:4662:-362.848,0,-126.346	0/1:255:61,194:61:2183:194:6884:-542.869,0,-119.973	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/1:99:42,57:42:1512:57:2040:-154.07,0,-106.573	0/1:110:36,74:36:1288:74:2584:-199.692,0,-83.1103	0/1:159:49,110:49:1756:110:3932:-306.209,0,-110.46	0/1:179:62,117:62:2228:117:4112:-316.378,0,-146.899	0/0:183:183,0:183:6538:0:0:0,-55.0885,-588.501	0/0:165:165,0:165:5928:0:0:0,-49.6699,-533.626	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:96:96,0:96:3443:0:0:0,-28.8989,-310.082	0/1:33:10,23:10:360:23:828:-64.9101,0,-22.8103	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/1:177:60,117:60:2148:117:4163:-321.57,0,-140.305	0/1:67:17,50:17:608:50:1753:-137.879,0,-34.883	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:17:2,15:2:72:15:536:-43.4573,0,-1.71921	0/1:101:35,66:35:1247:66:2294:-176.312,0,-82.13	0/0:150:149,1:149:5352:1:36:0,-41.5562,-478.212	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:166:63,103:63:2253:103:3611:-275.223,0,-153.06	0/0:138:132,5:132:4724:5:180:0,-25.0489,-408.767	0/1:94:25,69:25:900:69:2429:-190.566,0,-53.0242	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/1:253:117,136:117:4204:136:4829:-358.577,0,-302.379	0/1:144:26,118:26:928:118:4224:-336.992,0,-40.4899	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:119:119,0:119:4280:0:0:0,-35.8226,-385.376	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/0:97:97,0:97:3446:0:0:0,-29.1999,-310.351	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:141:141,0:141:5052:0:0:0,-42.4452,-454.825	0/0:85:83,2:83:2946:2:72:0,-18.7508,-258.535	0/1:149:49,100:49:1756:100:3464:-267.115,0,-113.471	0/1:146:49,97:49:1756:97:3378:-260.282,0,-114.374	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:109:109,0:109:3907:0:0:0,-32.8123,-351.822	0/0:92:91,0:91:3261:0:0:0,-27.3937,-293.349	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:174:35,139:35:1256:139:4927:-391.204,0,-60.9661	0/0:166:166,0:166:5923:0:0:0,-49.971,-533.181	0/1:81:33,48:33:1188:48:1687:-127.729,0,-82.8452	0/1:142:35,107:35:1256:107:3793:-298.822,0,-70.599	0/0:64:64,0:64:2264:0:0:0,-19.2659,-204.021	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/1:162:57,105:57:2035:105:3687:-283.268,0,-134.655	0/1:270:45,225:45:1605:225:7816:-622.199,0,-63.46	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937
chr04	14353092	.	T	C	34772.7	PASS	AB=0.427369;ABP=237.062;AC=44;AF=0.23913;AN=184;AO=2195;CIGAR=1X;DP=10635;DPB=10635;DPRA=1.15495;EPP=4700.16;EPPR=18137.4;GTI=2;LEN=1;MEANALT=1.08;MQM=59.4068;MQMR=59.9343;NS=92;NUMALT=1;ODDS=1.86074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78357;QR=301533;RO=8435;RPL=8;RPP=4700.16;RPPR=18137.4;RPR=2187;RUN=1;SAF=2195;SAP=4769.39;SAR=0;SRF=8435;SRP=18319.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:160:160,0:160:5699:0:0:0,-48.1648,-512.124	0/0:127:127,0:127:4532:0:0:0,-38.2308,-408.046	0/0:334:334,0:334:11955:0:0:0,-100.544,-1075.43	0/0:103:103,0:103:3683:0:0:0,-31.0061,-331.656	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:102:64,38:64:2292:38:1347:-90.7342,0,-175.836	0/1:219:117,102:117:4154:102:3624:-260.336,0,-308.109	0/1:87:50,37:50:1775:37:1328:-93.6072,0,-133.843	0/0:144:143,1:143:5080:1:36:0,-39.75,-453.688	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:80:80,0:80:2868:0:0:0,-24.0824,-257.38	0/0:71:70,1:70:2486:1:36:0,-17.7749,-220.39	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/1:44:19,25:19:680:25:880:-65.8227,0,-48.2838	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.922	0/1:78:45,33:45:1612:33:1175:-82.5684,0,-121.89	0/1:31:15,16:15:540:16:572:-42.4782,0,-39.6046	0/1:233:148,85:148:5296:85:3052:-204.766,0,-406.635	0/1:113:59,54:59:2116:54:1931:-140.018,0,-156.692	0/1:106:44,62:44:1572:62:2216:-167.789,0,-109.862	0/1:52:29,23:29:1040:23:810:-57.5598,0,-78.2608	0/0:90:84,6:84:3007:6:216:0,-7.30219,-251.07	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.106	0/1:407:249,158:249:8904:158:5642:-385.244,0,-678.823	0/1:169:107,62:107:3839:62:2215:-148.734,0,-294.812	0/1:32:15,17:15:536:17:612:-45.7723,0,-38.9419	0/1:266:151,115:151:5370:115:4123:-290.588,0,-403.324	0/1:126:86,40:86:3070:40:1428:-90.8785,0,-238.589	0/0:143:143,0:143:5094:0:0:0,-43.0473,-458.599	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	.:.:.:.:.:.:.:.	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:247:247,0:247:8856:0:0:0,-74.3544,-797.004	0/0:332:331,0:331:11794:0:0:0,-99.6409,-1060.96	0/1:43:20,23:20:720:23:820:-60.9681,0,-52.1845	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:174:90,84:90:3228:84:3011:-218.755,0,-238.361	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	0/1:56:33,23:33:1169:23:828:-57.9772,0,-88.6576	0/1:74:32,41:32:1126:41:1459:-109.235,0,-79.3118	0/0:80:80,0:80:2876:0:0:0,-24.0824,-258.988	0/1:104:68,36:68:2440:36:1287:-84.8196,0,-188.547	0/1:157:99,58:99:3544:58:2084:-139.775,0,-271.899	0/1:391:238,152:238:8521:152:5421:-368.795,0,-649.037	0/1:98:60,38:60:2147:38:1357:-92.9189,0,-163.996	0/0:331:330,1:330:11806:1:36:0,-96.0426,-1058.8	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:299:299,0:299:10719:0:0:0,-90.008,-964.614	0/1:45:32,13:32:1144:13:464:-28.5512,0,-89.7232	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.8748	0/1:143:91,52:91:3237:52:1868:-125.324,0,-248.504	0/1:46:12,34:12:432:34:1207:-95.0786,0,-25.3738	.:.:.:.:.:.:.:.	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:87:59,28:59:2104:28:999:-64.0274,0,-163.44	0/0:118:118,0:118:4223:0:0:0,-35.5215,-380.25	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:407:248,158:248:8829:158:5611:-381.831,0,-672.02	0/0:315:312,2:312:11146:2:72:0,-88.0465,-996.181	0/1:70:37,33:37:1328:33:1165:-83.3363,0,-98.7501	0/0:144:144,0:144:5147:0:0:0,-43.3483,-463.372	0/1:219:143,76:143:5128:76:2709:-178.113,0,-395.705	0/1:94:42,52:42:1508:52:1859:-139.28,0,-107.718	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/0:98:97,1:97:3458:1:36:0,-25.9027,-307.833	0/1:8:2,6:2:72:6:216:-17.3534,0,-4.42848	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.28	0/0:122:122,0:122:4351:0:0:0,-36.7257,-391.766	0/0:133:133,0:133:4746:0:0:0,-40.037,-427.294	0/0:167:167,0:167:5992:0:0:0,-50.272,-539.384	0/1:149:92,57:92:3296:57:2034:-138.27,0,-251.997	0/1:161:86,75:86:3077:75:2661:-191.073,0,-228.691	0/1:12:5,7:5:180:7:243:-18.5835,0,-12.9397	0/0:192:192,0:192:6855:0:0:0,-57.7978,-616.861	0/0:167:167,0:167:5984:0:0:0,-50.272,-538.665	0/0:223:223,0:223:7965:0:0:0,-67.1297,-716.764	0/0:104:104,0:104:3719:0:0:0,-31.3071,-334.911	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:117:54,63:54:1923:63:2260:-168.346,0,-138.123	0/0:201:201,0:201:7189:0:0:0,-60.507,-647.063	0/1:58:31,27:31:1112:27:968:-69.9328,0,-82.9316	0/1:104:56,48:56:2008:48:1719:-123.578,0,-149.686	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:55:25,30:25:900:30:1072:-80.2182,0,-64.7644	0/1:122:43,79:43:1544:79:2820:-217.312,0,-102.527	0/0:141:141,0:141:5039:0:0:0,-42.4452,-453.601	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369
chr04	14381752	.	C	T	41852.3	PASS	AB=0.522021;ABP=24.433;AC=48;AF=0.255319;AN=188;AO=2669;CIGAR=1X;DP=9807;DPB=9807;DPRA=1.09094;EPP=5798.67;EPPR=15474.8;GTI=0;LEN=1;MEANALT=1.09259;MQM=40.2859;MQMR=40.2571;NS=94;NUMALT=1;ODDS=2.54246;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95556;QR=254491;RO=7125;RPL=0;RPP=5798.67;RPPR=15474.8;RPR=2669;RUN=1;SAF=2669;SAP=5798.67;SAR=0;SRF=7125;SRP=15474.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:30,37:30:1076:37:1305:-90.3239,0,-69.7532	0/0:167:167,0:167:5976:0:0:0,-50.272,-505.511	0/0:119:119,0:119:4260:0:0:0,-35.8226,-357.367	0/0:208:208,0:208:7440:0:0:0,-62.6142,-647.957	0/0:94:92,2:92:3292:2:72:0,-21.7968,-277.252	0/0:69:69,0:69:2480:0:0:0,-20.7711,-208.9	0/1:95:48,47:48:1712:47:1688:-119.606,0,-120.067	0/1:216:98,118:98:3492:118:4240:-289.839,0,-227.88	0/1:114:47,67:47:1665:67:2404:-165.964,0,-103.56	0/0:99:99,0:99:3516:0:0:0,-29.802,-305.697	0/0:55:55,0:55:1972:0:0:0,-16.5566,-171.651	0/0:78:77,0:77:2760:0:0:0,-23.1793,-232.66	0/0:83:83,0:83:2976:0:0:0,-24.9855,-249.406	0/0:65:65,0:65:2320:0:0:0,-19.5669,-199.363	0/0:82:80,1:80:2868:1:36:0,-21.7709,-245.639	0/1:58:31,27:31:1108:27:968:-65.0021,0,-78.1584	0/0:64:64,0:64:2284:0:0:0,-19.2659,-192.916	0/1:74:34,40:34:1224:40:1436:-98.1829,0,-79.5109	0/1:66:30,36:30:1060:36:1296:-86.8195,0,-69.0079	0/1:222:97,125:97:3472:125:4465:-320.952,0,-236.395	0/1:167:70,97:70:2504:97:3468:-248.419,0,-164.416	0/1:118:38,80:38:1356:80:2861:-215.683,0,-83.6684	0/1:98:45,53:45:1592:53:1892:-134.949,0,-107.413	0/0:183:177,6:177:6348:6:216:0,-36.7472,-525.606	0/0:88:88,0:88:3156:0:0:0,-26.4906,-270.817	0/1:331:183,148:183:6544:148:5312:-368.306,0,-474.772	0/1:214:110,104:110:3917:104:3736:-255.269,0,-268.631	0/1:50:30,20:30:1080:20:720:-46.795,0,-77.7955	0/1:203:86,117:86:3080:117:4204:-307.815,0,-210.458	0/1:87:51,36:51:1820:36:1277:-84.3549,0,-130.078	0/0:108:108,0:108:3872:0:0:0,-32.5112,-333.591	0/1:11:5,6:5:180:6:216:-15.4845,0,-11.4978	0/1:20:12,8:12:432:8:288:-19.1972,0,-31.6333	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.6318	0/1:7:5,2:5:180:2:72:-1.8573,0,-13.4757	0/0:12:12,0:12:428:0:0:0,-3.61236,-36.6661	0/0:238:237,0:237:8485:0:0:0,-71.3441,-745.088	0/0:217:215,0:215:7660:0:0:0,-64.7214,-653.982	0/1:87:44,43:44:1561:43:1540:-104.174,0,-105.292	0/1:4:1,3:1:36:3:104:-8.04647,0,-2.25037	0/1:140:75,64:75:2680:64:2296:-155.005,0,-189.059	0/1:53:31,22:31:1116:22:792:-51.921,0,-77.9042	0/1:163:79,84:79:2828:84:3004:-202.94,0,-193.14	0/1:97:51,46:51:1813:46:1652:-115.113,0,-129.266	0/0:80:79,1:79:2812:1:36:0,-21.1796,-239.785	0/1:45:23,22:23:824:22:788:-56.4944,0,-59.3055	0/1:177:94,83:94:3344:83:2965:-193.614,0,-227.945	0/1:223:103,120:103:3649:120:4292:-306.307,0,-250.945	0/1:154:69,85:69:2480:85:3044:-219.9,0,-167.954	0/0:154:153,0:153:5488:0:0:0,-46.0576,-471.815	0/0:124:124,0:124:4420:0:0:0,-37.3277,-388.855	0/0:8:8,0:8:284:0:0:0,-2.40824,-24.927	0/0:130:126,2:126:4496:2:72:0,-32.3769,-369.784	0/1:69:35,34:35:1248:34:1212:-86.3835,0,-87.5274	0/0:17:17,0:17:608:0:0:0,-5.11751,-51.911	0/1:144:75,69:75:2676:69:2480:-170.368,0,-186.391	0/1:86:40,46:40:1420:46:1636:-117.36,0,-97.6749	0/1:9:7,2:7:252:2:72:-4.00936,0,-19.4816	0/1:23:6,17:6:216:17:608:-45.865,0,-12.525	0/1:84:43,41:43:1532:41:1468:-99.4083,0,-107.039	0/0:115:115,0:115:4109:0:0:0,-34.6184,-356.586	0/0:11:11,0:11:392:0:0:0,-3.31133,-34.6499	0/1:220:106,114:106:3753:114:4084:-294.066,0,-263.309	0/0:186:184,2:184:6568:2:72:0,-49.3364,-564.995	0/1:109:68,41:68:2436:41:1464:-93.2084,0,-175.425	0/0:90:89,0:89:3169:0:0:0,-26.7917,-275.781	0/1:225:99,126:99:3528:126:4508:-324.055,0,-240.462	0/1:102:39,63:39:1400:63:2252:-166.089,0,-91.2899	0/0:25:25,0:25:896:0:0:0,-7.52575,-76.5336	0/0:40:40,0:40:1416:0:0:0,-12.0412,-119.524	0/0:88:88,0:88:3152:0:0:0,-26.4906,-276.877	0/1:28:10,18:10:360:18:648:-48.6652,0,-23.2436	0/0:24:24,0:24:860:0:0:0,-7.22472,-72.2692	0/0:81:81,0:81:2896:0:0:0,-24.3834,-244.418	0/0:165:165,0:165:5880:0:0:0,-49.6699,-501.829	0/0:163:163,0:163:5840:0:0:0,-49.0679,-506.242	0/1:106:49,57:49:1736:57:2052:-142.134,0,-114.288	0/1:117:48,69:48:1720:69:2453:-172.619,0,-110.121	0/1:12:4,8:4:144:8:288:-21.1171,0,-8.92176	0/0:121:121,0:121:4336:0:0:0,-36.4246,-371.584	0/0:107:107,0:107:3816:0:0:0,-32.2102,-318.643	0/0:288:287,0:287:10221:0:0:0,-86.3956,-886.529	0/0:116:115,0:115:4128:0:0:0,-34.6184,-358.733	0/0:42:42,0:42:1504:0:0:0,-12.6433,-130.4	0/1:105:56,49:56:1989:49:1760:-120.474,0,-139.639	0/0:154:154,0:154:5471:0:0:0,-46.3586,-477.465	0/1:61:32,29:32:1144:29:1040:-69.859,0,-79.0243	0/1:92:41,51:41:1468:51:1813:-121.995,0,-93.3169	0/0:90:90,0:90:3236:0:0:0,-27.0927,-271.053	0/0:35:35,0:35:1256:0:0:0,-10.536,-107.728	0/1:63:25,38:25:888:38:1360:-98.6946,0,-57.6606	0/1:70:26,43:26:924:43:1529:-113.11,0,-60.1751	0/0:104:104,0:104:3704:0:0:0,-31.3071,-322.069	0/0:128:128,0:128:4565:0:0:0,-38.5318,-397.185
chr04	14452653	.	C	T	39539.1	PASS	AB=0.361091;ABP=1140.18;AC=44;AF=0.234043;AN=188;AO=2464;CIGAR=1X;DP=15634;DPB=15634;DPRA=0.913432;EPP=4944.72;EPPR=27615.2;GTI=4;LEN=1;MEANALT=1.03774;MQM=53.655;MQMR=48.9404;NS=94;NUMALT=1;ODDS=0.526611;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87344;QR=467919;RO=13164;RPL=2027;RPP=2230.97;RPPR=131.333;RPR=437;RUN=1;SAF=2073;SAP=2496.26;SAR=391;SRF=6252;SRP=74.8649;SRR=6912;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:64,9:64:2281:9:311:-6.34762,0,-168.458	0/0:169:168,0:168:5929:0:0:0,-50.573,-515.611	0/0:264:264,0:264:9395:0:0:0,-79.4719,-820.659	0/0:484:483,0:483:17255:0:0:0,-145.397,-1524	0/0:161:160,1:160:5723:1:36:0,-44.8676,-475.914	0/0:91:91,0:91:3237:0:0:0,-27.3937,-283.901	0/1:213:160,53:160:5683:53:1888:-106.076,0,-439.135	0/1:209:136,73:136:4852:73:2590:-170.432,0,-355.332	0/1:162:112,50:112:3985:50:1784:-112.074,0,-297.533	0/0:172:172,0:172:6082:0:0:0,-51.7772,-536.345	0/0:121:121,0:121:4310:0:0:0,-36.4246,-382.518	0/0:219:219,0:219:7776:0:0:0,-65.9256,-677.348	0/0:175:175,0:175:6245:0:0:0,-52.6802,-544.175	0/0:133:133,0:133:4739:0:0:0,-40.037,-397.845	0/0:139:139,0:139:4961:0:0:0,-41.8432,-438.291	0/1:98:75,23:75:2676:23:824:-44.9824,0,-199.536	0/0:103:103,0:103:3657:0:0:0,-31.0061,-317.499	0/1:54:37,17:37:1328:17:603:-38.3439,0,-99.6759	0/1:37:27,10:27:955:10:356:-21.2431,0,-72.7552	0/1:282:202,80:202:7162:80:2852:-172.024,0,-547.17	0/1:203:145,58:145:5131:58:2043:-123.029,0,-365.116	0/1:172:69,103:69:2439:103:3650:-213.766,0,-166.267	0/1:204:123,81:123:4383:81:2838:-194.245,0,-328.369	0/0:136:134,2:134:4777:2:72:0,-34.1034,-381.876	0/0:191:189,1:189:6713:1:36:0,-53.9264,-563.12	0/1:383:218,165:218:7742:165:5873:-338.718,0,-573.796	0/1:215:165,50:165:5859:50:1788:-96.4812,0,-426.285	0/1:66:43,23:43:1509:23:828:-54.9761,0,-108.337	0/1:444:207,237:207:7403:237:8421:-483.3,0,-525.558	0/1:237:146,90:146:5199:90:3149:-212.231,0,-367.27	0/0:266:266,0:266:9478:0:0:0,-80.074,-836.906	0/1:14:12,2:12:432:2:72:-2.6223,0,-30.9037	0/0:33:31,2:31:1112:2:63:0,-3.95083,-83.4606	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.3459	0/0:13:13,0:13:468:0:0:0,-3.91339,-40.5474	0/0:21:21,0:21:734:0:0:0,-6.32163,-63.5709	0/0:359:358,0:358:12754:0:0:0,-107.769,-1134.21	0/0:238:238,0:238:8481:0:0:0,-71.6451,-697.555	0/1:49:37,12:37:1320:12:416:-23.0189,0,-100.271	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:202:145,57:145:5140:57:2030:-122.163,0,-374.612	0/1:23:14,9:14:500:9:324:-22.5822,0,-35.4323	0/1:183:126,57:126:4462:57:1987:-124.005,0,-328.847	0/1:114:80,34:80:2846:34:1203:-74.2576,0,-216.739	0/0:135:135,0:135:4761:0:0:0,-40.639,-420.128	0/1:222:131,91:131:4684:91:3229:-149.005,0,-348.501	0/1:109:69,40:69:2455:40:1436:-96.7181,0,-179.016	0/1:265:177,88:177:6274:88:3121:-201.34,0,-477.122	0/1:187:136,51:136:4822:51:1813:-107.154,0,-369.238	0/0:242:242,0:242:8610:0:0:0,-72.8493,-760.753	0/0:242:242,0:242:8604:0:0:0,-72.8493,-763.93	0/0:12:12,0:12:428:0:0:0,-3.61236,-34.4885	0/0:200:199,1:199:7014:1:36:0,-56.6077,-609.815	0/1:168:82,86:82:2914:86:3030:-167.328,0,-207.495	0/0:24:24,0:24:851:0:0:0,-7.22472,-73.1731	0/1:218:154,64:154:5451:64:2264:-137.839,0,-398.139	0/1:68:46,22:46:1640:22:783:-50.3229,0,-123.305	0/1:8:2,6:2:72:6:216:-8.53309,0,-4.31039	0/1:14:5,9:5:180:9:316:-17.2348,0,-12.0517	0/1:142:82,60:82:2895:60:2124:-148.122,0,-202.121	0/0:189:187,2:187:6633:2:72:0,-50.0579,-582.9	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.0087	0/1:409:216,193:216:7627:193:6815:-381.292,0,-551.778	0/0:350:347,3:347:12289:3:108:0,-95.2853,-1078.86	0/1:90:67,23:67:2389:23:824:-47.3906,0,-174.362	0/0:163:162,1:162:5713:1:36:0,-45.4696,-503.986	0/1:286:210,76:210:7456:76:2695:-156.696,0,-571.878	0/1:143:71,72:71:2507:72:2536:-185.441,0,-178.167	0/0:92:92,0:92:3292:0:0:0,-27.6948,-277.217	0/0:119:119,0:119:4247:0:0:0,-35.8226,-362.937	0/0:81:80,0:80:2860:0:0:0,-24.0824,-254.035	0/1:36:30,6:30:1067:6:216:-8.95343,0,-83.8381	0/0:257:256,1:256:9102:1:36:0,-73.7664,-787.204	0/0:177:177,0:177:6302:0:0:0,-53.2823,-549.093	0/0:349:349,0:349:12369:0:0:0,-105.059,-1040.84	0/0:267:267,0:267:9533:0:0:0,-80.375,-844.9	0/1:129:95,34:95:3403:34:1220:-69.3836,0,-256.818	0/1:175:111,64:111:3946:64:2279:-152.691,0,-289.566	0/0:19:19,0:19:669:0:0:0,-5.71957,-57.1135	0/0:188:188,0:188:6719:0:0:0,-56.5936,-569.084	0/0:231:231,0:231:8196:0:0:0,-69.5379,-715.148	0/0:514:514,0:514:18248:0:0:0,-154.729,-1600.63	0/0:138:138,0:138:4910:0:0:0,-41.5421,-435.151	0/0:178:178,0:178:6299:0:0:0,-53.5833,-557.8	0/1:95:61,34:61:2171:34:1194:-79.1653,0,-164.246	0/0:296:296,0:296:10494:0:0:0,-89.1049,-927.598	0/1:28:23,5:23:819:5:180:-8.12322,0,-64.2691	0/1:118:82,36:82:2888:36:1274:-79.4408,0,-217.696	0/0:177:177,0:177:6306:0:0:0,-53.2823,-549.339	0/0:101:101,0:101:3586:0:0:0,-30.404,-300.361	0/1:125:84,41:84:2990:41:1464:-93.8691,0,-218.106	0/1:113:57,56:57:2039:56:1990:-145.356,0,-146.378	0/0:352:352,0:352:12504:0:0:0,-105.963,-1102.5	0/0:249:249,0:249:8898:0:0:0,-74.9565,-785.697
chr04	14452659	.	T	C	35324.1	PASS	AB=0.356242;ABP=1212.35;AC=44;AF=0.234043;AN=188;AO=2416;CIGAR=1X;DP=15640;DPB=15640;DPRA=0.88338;EPP=5240.61;EPPR=28692.5;GTI=5;LEN=1;MEANALT=1.01923;MQM=53.3717;MQMR=48.7642;NS=94;NUMALT=1;ODDS=1.561;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83789;QR=470040;RO=13216;RPL=2018;RPP=2361.79;RPPR=114.57;RPR=398;RUN=1;SAF=2017;SAP=2355.97;SAR=399;SRF=6195;SRP=115.113;SRR=7021;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:62,9:62:2205:9:312:-7.04131,0,-162.512	0/0:167:167,0:167:5947:0:0:0,-50.272,-517.071	0/0:269:269,0:269:9567:0:0:0,-80.9771,-833.572	0/0:485:484,0:484:17215:0:0:0,-145.699,-1520.41	0/0:159:158,0:158:5632:0:0:0,-47.5627,-471.386	0/0:92:92,0:92:3275:0:0:0,-27.6948,-286.631	0/1:211:162,49:162:5690:49:1663:-86.4295,0,-440.27	0/1:204:134,70:134:4770:70:2380:-153.04,0,-349.145	0/1:156:109,47:109:3881:47:1607:-97.9475,0,-290.511	0/0:170:170,0:170:6064:0:0:0,-51.1751,-534.914	0/0:118:118,0:118:4228:0:0:0,-35.5215,-375.502	0/0:217:217,0:217:7740:0:0:0,-65.3235,-673.169	0/0:179:179,0:179:6351:0:0:0,-53.8844,-552.88	0/0:129:129,0:129:4600:0:0:0,-38.8329,-384.654	0/0:139:139,0:139:4935:0:0:0,-41.8432,-436.306	0/1:97:74,23:74:2621:23:795:-42.6669,0,-194.92	0/0:101:101,0:101:3596:0:0:0,-30.404,-312.216	0/1:54:37,17:37:1332:17:600:-38.0736,0,-99.933	0/1:37:27,10:27:963:10:356:-21.2431,0,-73.2125	0/1:278:202,76:202:7156:76:2602:-150.738,0,-548.335	0/1:199:147,52:147:5221:52:1730:-96.0667,0,-372.399	0/1:177:71,106:71:2523:106:3699:-214.581,0,-172.252	0/1:199:121,78:121:4331:78:2680:-181.537,0,-325.057	0/0:141:139,2:139:4935:2:59:0,-36.8411,-395.511	0/0:194:193,0:193:6858:0:0:0,-58.0988,-578.335	0/1:381:220,161:220:7827:161:5671:-314.757,0,-582.015	0/1:214:165,49:165:5869:49:1687:-87.6894,0,-425.003	0/1:66:43,23:43:1540:23:801:-52.5385,0,-111.131	0/1:446:208,238:208:7374:238:8333:-471.656,0,-522.714	0/1:237:151,85:151:5381:85:2959:-195.238,0,-381.712	0/0:267:267,0:267:9502:0:0:0,-80.375,-839.216	0/1:14:12,2:12:432:2:68:-2.24329,0,-30.9037	0/0:32:30,2:30:1063:2:57:0,-4.21965,-80.4693	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.0864	0/0:13:13,0:13:455:0:0:0,-3.91339,-39.4732	0/0:22:22,0:22:792:0:0:0,-6.62266,-67.7369	0/0:364:364,0:364:12903:0:0:0,-109.575,-1147.85	0/0:237:237,0:237:8440:0:0:0,-71.3441,-693.532	0/1:50:38,12:38:1341:12:398:-21.0879,0,-101.038	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:195:142,53:142:5058:53:1812:-104.655,0,-370.249	0/1:24:15,9:15:531:9:324:-22.2811,0,-37.9186	0/1:181:125,56:125:4462:56:1945:-120.828,0,-328.367	0/1:112:79,33:79:2819:33:1136:-68.8269,0,-214.743	0/0:136:135,0:135:4775:0:0:0,-40.639,-421.043	0/1:222:129,93:129:4591:93:3304:-152.483,0,-340.345	0/1:107:71,36:71:2522:36:1257:-81.2125,0,-185.835	0/1:261:173,88:173:6181:88:3077:-198.588,0,-469.3	0/1:187:137,50:137:4871:50:1744:-100.946,0,-373.587	0/0:244:243,0:243:8659:0:0:0,-73.1503,-763.003	0/0:244:243,0:243:8636:0:0:0,-73.1503,-766.725	0/0:13:13,0:13:459:0:0:0,-3.91339,-36.6705	0/0:199:198,1:198:7028:1:21:0,-57.805,-611.935	0/1:169:81,88:81:2876:88:3036:-162.442,0,-203.772	0/0:24:24,0:24:836:0:0:0,-7.22472,-71.38	0/1:223:159,64:159:5619:64:2249:-134.986,0,-411.92	0/1:68:46,22:46:1639:22:775:-49.6011,0,-123.19	0/1:9:3,6:3:99:6:216:-8.23206,0,-6.4035	0/1:15:5,10:5:176:10:333:-18.532,0,-11.4171	0/1:145:84,61:84:2957:61:2072:-143.096,0,-206.536	0/0:192:190,2:190:6763:2:68:0,-51.34,-594.852	0/0:9:9,0:9:306:0:0:0,-2.70927,-26.7599	0/1:397:210,187:210:7486:187:6545:-358.586,0,-543.142	0/0:351:348,3:348:12424:3:108:0,-95.5864,-1088.92	0/1:92:68,24:68:2401:24:824:-46.7778,0,-175.371	0/0:165:163,2:163:5801:2:72:0,-42.8332,-508.66	0/1:287:212,75:212:7502:75:2561:-144.339,0,-575.154	0/1:139:70,69:70:2508:69:2382:-172.791,0,-179.388	0/0:92:91,1:91:3268:1:36:0,-24.0965,-271.459	0/0:118:118,0:118:4197:0:0:0,-35.5215,-357.749	0/0:81:81,0:81:2867:0:0:0,-24.3834,-254.518	0/1:37:30,7:30:1061:7:248:-11.5261,0,-82.9952	0/0:261:258,3:258:9162:3:108:0,-70.4342,-787.68	0/0:179:179,0:179:6367:0:0:0,-53.8844,-553.436	0/0:360:360,0:360:12754:0:0:0,-108.371,-1069.98	0/0:270:270,0:270:9605:0:0:0,-81.2781,-851.457	0/1:131:97,34:97:3454:34:1199:-66.89,0,-259.918	0/1:174:110,64:110:3931:64:2226:-148.223,0,-287.399	0/0:19:19,0:19:684:0:0:0,-5.71957,-58.4699	0/0:189:189,0:189:6692:0:0:0,-56.8947,-566.816	0/0:234:234,0:234:8334:0:0:0,-70.441,-722.858	0/0:519:519,0:519:18463:0:0:0,-156.235,-1621.54	0/0:142:142,0:142:5067:0:0:0,-42.7463,-448.61	0/0:180:180,0:180:6390:0:0:0,-54.1854,-565.28	0/1:92:61,31:61:2158:31:1068:-68.7299,0,-163.849	0/0:296:295,0:295:10490:0:0:0,-88.8038,-923.583	0/1:28:23,5:23:824:5:180:-8.12322,0,-64.7208	0/1:117:82,35:82:2924:35:1190:-72.178,0,-220.362	0/0:175:175,0:175:6228:0:0:0,-52.6802,-542.227	0/0:103:103,0:103:3676:0:0:0,-31.0061,-306.123	0/1:122:83,39:83:2950:39:1344:-84.5292,0,-215.751	0/1:112:58,54:58:2076:54:1872:-135.041,0,-150.237	0/0:356:356,0:356:12710:0:0:0,-107.167,-1120	0/0:247:247,0:247:8812:0:0:0,-74.3544,-778.32
chr04	14452662	.	G	T	344044	PASS	AB=0.640803;ABP=1152.63;AC=144;AF=0.765957;AN=188;AO=13081;CIGAR=1X;DP=15494;DPB=15494;DPRA=0;EPP=28399.4;EPPR=5225.41;GTI=5;LEN=1;MEANALT=1.03191;MQM=48.7488;MQMR=53.4757;NS=94;NUMALT=1;ODDS=0.694566;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=465790;QR=85264;RO=2409;RPL=6118;RPP=121.54;RPPR=2377.41;RPR=6963;RUN=1;SAF=6117;SAP=122.102;SAR=6964;SRF=2015;SRP=2371.57;SRR=394;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:9,65:9:316:65:2310:-170.539,0,-6.50172	1/1:167:0,167:0:0:167:5958:-518.229,-50.272,0	1/1:264:0,264:0:0:264:9433:-821.752,-79.4719,0	1/1:482:0,482:0:0:482:17111:-1511.23,-145.096,0	1/1:162:1,161:1:36:161:5743:-477.403,-45.1686,0	1/1:92:0,92:0:0:92:3304:-289.038,-27.6948,0	0/1:208:50,158:50:1753:158:5605:-433.715,0,-95.4366	0/1:205:70,135:70:2495:135:4809:-352.115,0,-163.091	0/1:156:47,109:47:1676:109:3874:-289.458,0,-104.164	1/1:169:0,169:0:0:169:6029:-531.498,-50.8741,0	1/1:118:0,118:0:0:118:4192:-372.581,-35.5215,0	1/1:218:0,218:0:0:218:7768:-676.025,-65.6245,0	1/1:174:0,172:0:0:172:6143:-533.524,-51.7772,0	1/1:131:0,131:0:0:131:4664:-389.514,-39.4349,0	1/1:138:0,138:0:0:138:4944:-436.829,-41.5421,0	0/1:97:23,74:23:808:74:2632:-195.252,0,-43.8402	1/1:97:0,97:0:0:97:3410:-296.829,-29.1999,0	0/1:54:18,36:18:648:36:1288:-96.1799,0,-42.3963	0/1:37:10,27:10:351:27:955:-72.7552,0,-20.7886	0/1:274:75,199:75:2680:199:7117:-546.207,0,-158.961	0/1:205:58,147:58:2037:147:5233:-372.252,0,-121.889	0/1:177:108,69:108:3795:69:2476:-168.07,0,-223.255	0/1:197:78,119:78:2774:119:4252:-318.944,0,-190.595	1/1:140:1,139:1:36:139:4945:-398.076,-38.5459,0	1/1:188:0,188:0:0:188:6715:-565.539,-56.5936,0	0/1:374:161,213:161:5700:213:7601:-563.751,0,-326.671	0/1:212:48,164:48:1686:164:5842:-425.909,0,-88.2065	0/1:64:22,42:22:788:42:1494:-107.593,0,-51.9789	0/1:437:233,204:233:8262:204:7288:-517.183,0,-473.716	0/1:235:89,146:89:3143:146:5211:-368.379,0,-212.349	1/1:268:0,268:0:0:268:9548:-842.931,-80.676,0	0/1:14:2,12:2:72:12:428:-30.7221,0,-2.6223	1/1:31:2,29:2:63:29:1036:-77.1713,-3.34878,0	1/1:9:0,9:0:0:9:315:-27.6893,-2.70927,0	1/1:13:0,13:0:0:13:460:-39.9267,-3.91339,0	1/1:23:0,23:0:0:23:828:-70.8183,-6.92369,0	1/1:360:0,360:0:0:360:12827:-1139.97,-108.371,0	1/1:238:0,238:0:0:238:8500:-698.672,-71.6451,0	0/1:50:11,39:11:396:39:1387:-105.339,0,-20.9312	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:200:55,145:55:1914:145:5173:-376.838,0,-112.328	0/1:23:8,15:8:288:15:536:-38.6725,0,-19.3437	0/1:179:55,124:55:1943:124:4367:-321.751,0,-121.254	0/1:113:33,80:33:1171:80:2824:-214.943,0,-71.6803	1/1:138:1,137:1:36:137:4840:-423.317,-37.9439,0	0/1:220:93,127:93:3271:127:4535:-335.898,0,-155.388	0/1:107:36,71:36:1261:71:2539:-186.562,0,-81.5729	0/1:262:92,170:92:3279:170:6024:-455.718,0,-216.457	0/1:182:48,134:48:1716:134:4742:-363.928,0,-99.9354	1/1:239:0,239:0:0:239:8533:-751.72,-71.9462,0	1/1:243:0,243:0:0:243:8684:-771.698,-73.1503,0	1/1:13:0,13:0:0:13:464:-37.099,-3.91339,0	1/1:196:1,195:1:36:195:6933:-602.858,-55.4036,0	0/1:165:83,82:83:2918:82:2919:-209.606,0,-159.063	1/1:27:0,27:0:0:27:968:-81.9909,-8.12781,0	0/1:215:62,152:62:2170:152:5426:-397.888,0,-130.227	0/1:65:21,44:21:756:44:1568:-117.904,0,-48.8003	0/1:9:6,3:6:216:3:108:-7.19187,0,-8.23206	0/1:15:10,5:10:352:5:180:-11.7507,0,-17.6911	0/1:143:60,83:60:2102:83:2951:-206.548,0,-145.844	1/1:190:2,188:2:68:188:6697:-589.1,-50.738,0	1/1:9:0,9:0:0:9:320:-27.9587,-2.70927,0	0/1:398:188,210:188:6688:210:7503:-544.368,0,-370.372	1/1:350:3,347:3:108:347:12376:-1084.22,-95.2853,0	0/1:88:22,66:22:760:66:2350:-171.876,0,-42.2252	1/1:168:1,167:1:36:167:5956:-525.802,-46.9748,0	0/1:284:78,206:78:2784:206:7324:-560.31,0,-165.306	0/1:136:68,68:68:2432:68:2436:-173.809,0,-178.195	1/1:90:0,90:0:0:90:3186:-270.104,-27.0927,0	1/1:119:0,119:0:0:119:4239:-361.538,-35.8226,0	1/1:80:0,80:0:0:80:2846:-252.698,-24.0824,0	0/1:35:7,28:7:252:28:991:-77.3506,0,-12.4929	1/1:255:1,254:1:36:254:9007:-778.305,-73.1644,0	1/1:176:0,176:0:0:176:6248:-544.53,-52.9813,0	1/1:349:0,349:0:0:349:12463:-1044.56,-105.059,0	1/1:264:0,264:0:0:264:9442:-836.726,-79.4719,0	0/1:130:33,97:33:1162:97:3420:-257.335,0,-63.8609	0/1:172:62,110:62:2208:110:3923:-288.734,0,-146.019	1/1:19:0,19:0:0:19:680:-58.1088,-5.71957,0	1/1:186:0,186:0:0:186:6613:-560.214,-55.9916,0	1/1:229:0,229:0:0:229:8172:-710.818,-68.9359,0	1/1:514:0,514:0:0:514:18308:-1607.63,-154.729,0	1/1:138:0,138:0:0:138:4917:-436.002,-41.5421,0	1/1:180:0,180:0:0:180:6383:-565.276,-54.1854,0	0/1:89:31,58:31:1095:58:2059:-156.241,0,-72.0674	1/1:291:0,291:0:0:291:10321:-910.606,-87.5997,0	0/1:27:5,22:5:176:22:788:-61.9736,0,-8.05721	0/1:115:34,81:34:1186:81:2877:-217.077,0,-72.4248	1/1:173:0,173:0:0:173:6127:-534.302,-52.0782,0	1/1:101:0,101:0:0:101:3612:-299.903,-30.404,0	0/1:123:39,83:39:1374:83:2927:-213.743,0,-86.3136	0/1:111:55,56:55:1955:56:2003:-143.865,0,-142.811	1/1:350:0,350:0:0:350:12423:-1096.73,-105.361,0	1/1:248:0,248:0:0:248:8828:-779.875,-74.6554,0
chr04	14558507	.	T	A	11787.2	PASS	AB=0.443142;ABP=50.9151;AC=47;AF=0.252688;AN=186;AO=757;CIGAR=1X;DP=3684;DPB=3684;DPRA=0.8822;EPP=1646.81;EPPR=6337.21;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.7345;MQMR=59.9911;NS=93;NUMALT=1;ODDS=0.325934;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27062;QR=104812;RO=2925;RPL=0;RPP=1646.81;RPPR=6345.88;RPR=757;RUN=1;SAF=757;SAP=1646.81;SAR=0;SRF=2924;SRP=6345.88;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:15,6:15:536:6:216:-13.4689,0,-42.2532	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:87:87,0:87:3104:0:0:0,-26.1896,-279.588	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:44:18,26:18:644:26:936:-71.3141,0,-45.0453	0/1:35:24,11:24:855:11:392:-25.0388,0,-66.7341	0/1:62:42,20:42:1482:20:720:-46.4616,0,-115.007	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:29:16,13:16:572:13:464:-33.363,0,-43.0836	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/1:28:19,9:19:684:9:324:-21.077,0,-53.4615	0/1:89:50,39:50:1800:39:1400:-99.4934,0,-135.491	0/1:27:8,19:8:288:19:661:-51.5533,0,-18.1396	0/1:38:23,15:23:828:15:532:-36.7739,0,-63.405	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:104:69,35:69:2455:35:1244:-80.954,0,-189.897	0/1:88:47,41:47:1672:41:1476:-106.516,0,-124.277	0/1:27:15,12:15:531:12:417:-29.7324,0,-39.9941	0/1:57:39,18:39:1404:18:648:-41.4932,0,-109.501	0/1:44:19,25:19:684:25:900:-68.0711,0,-48.645	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	.:.:.:.:.:.:.:.	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:130:129,0:129:4618:0:0:0,-38.8329,-415.422	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/1:43:14,29:14:500:29:1044:-81.3305,0,-32.3919	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:35:23,12:23:828:12:432:-28.6851,0,-64.3081	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:48:26,22:26:936:22:792:-57.1454,0,-70.11	0/1:32:19,13:19:680:13:468:-32.8267,0,-51.8962	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:48:38,10:38:1364:10:360:-18.2949,0,-108.611	0/1:27:11,16:11:396:16:574:-43.861,0,-27.8549	0/1:61:34,27:34:1216:27:949:-67.3553,0,-91.3837	0/1:22:11,11:11:392:11:388:-28.6347,0,-28.9974	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:54:39,15:39:1396:15:540:-32.6747,0,-109.683	0/1:64:39,25:39:1396:25:900:-62.0551,0,-106.673	0/1:5:2,3:2:68:3:104:-8.19766,0,-4.95256	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:40:26,14:26:936:14:504:-33.646,0,-72.5183	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:52:31,21:31:1112:21:752:-52.3527,0,-84.7378	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.5363	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:58:39,18:39:1400:18:644:-40.7698,0,-108.781	0/1:42:12,30:12:432:30:1064:-83.4284,0,-26.5779	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.984	0/1:19:14,5:14:500:5:180:-10.8325,0,-39.6166	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.722	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:16:11,5:11:396:5:169:-10.7238,0,-31.1663	0/1:29:16,13:16:572:13:464:-33.3609,0,-43.0834	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.361	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:25:10,15:10:360:15:540:-41.4084,0,-25.2186	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:16:9,7:9:324:7:248:-17.8468,0,-24.6894	0/1:47:24,23:24:860:23:824:-60.3349,0,-63.5734	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:87:29,58:29:1040:58:2072:-160.544,0,-67.7248	0/1:50:17,33:17:612:33:1184:-91.812,0,-40.3619	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.699	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951
chr04	14558546	.	TGAA	TGAT,CGAT	75131.1	PASS	AB=0.538832,0.453943;ABP=24.7656,33.6135;AC=139,47;AF=0.747312,0.252688;AN=186;AO=2800,755;CIGAR=3M1X,1X2M1X;DP=3574;DPB=3574.25;DPRA=38.837,0.888144;EPP=6083.13,1642.47;EPPR=11.6962;GTI=2;LEN=1,4;MEANALT=1.6413,2.19565;MQM=59.9989,59.7099;MQMR=60;NS=93;NUMALT=2;ODDS=0.178654;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,32;PQR=0;PRO=0;QA=99205,26093;QR=115;RO=4;RPL=2800,755;RPP=6083.13,1642.47;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=2800,755;SAP=6083.13,1642.47;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:21:0,15,6:0:0:15,6:532,215:-61.2335,-17.893,-13.3775,-43.6976,0,-41.8915	1/1:47:0,47,0:0:0:47,0:1676,0:-151.127,-14.1484,0,-151.127,-14.1484,-151.127	1/1:72:0,71,0:0:0:71,0:2510,0:-225.938,-21.3731,0,-225.938,-21.3731,-225.938	1/1:87:0,87,0:0:0:87,0:3061,0:-275.72,-26.1896,0,-275.72,-26.1896,-275.72	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:19:0,19,0:0:0:19,0:676,0:-61.168,-5.71957,0,-61.168,-5.71957,-61.168	1/2:44:0,17,26:0:0:17,26:598,870:-119.174,-70.4878,-65.3703,-48.7367,0,-40.91	1/2:32:0,20,11:0:0:20,11:716,384:-89.66,-31.2614,-25.2408,-58.4634,0,-55.1521	1/2:58:0,35,21:0:0:35,21:1243,705:-158.459,-57.161,-46.6249,-101.363,0,-95.0416	1/1:48:0,48,0:0:0:48,0:1712,0:-154.365,-14.4494,0,-154.365,-14.4494,-154.365	1/1:32:0,32,0:0:0:32,0:1127,0:-101.737,-9.63296,0,-101.737,-9.63296,-101.737	1/1:73:0,72,0:0:0:72,0:2530,0:-227.593,-21.6742,0,-227.593,-21.6742,-227.593	1/1:36:0,35,0:0:0:35,0:1243,0:-111.814,-10.5361,0,-111.814,-10.5361,-111.814	1/1:27:0,27,0:0:0:27,0:946,0:-85.4529,-8.12781,0,-85.4529,-8.12781,-85.4529	1/1:56:0,56,0:0:0:56,0:1966,0:-177.214,-16.8577,0,-177.214,-16.8577,-177.214	1/2:26:0,14,12:0:0:14,12:500,400:-73.4817,-32.7041,-28.4897,-41.1218,0,-37.5094	1/1:15:0,15,0:0:0:15,0:527,0:-47.7602,-4.51545,0,-47.7602,-4.51545,-47.7602	1/2:13:0,9,4:0:0:9,4:324,134:-37.6403,-11.1862,-8.47695,-26.7966,0,-25.5925	1/2:18:0,10,8:0:0:10,8:360,279:-52.4202,-23.0398,-20.0295,-29.734,0,-27.3258	1/2:28:0,19,9:0:0:19,9:684,312:-81.5253,-25.7053,-19.9857,-56.1708,0,-53.4615	1/2:87:0,49,38:0:0:49,38:1727,1322:-248.439,-107.825,-93.0746,-140.964,0,-129.525	1/2:27:0,7,19:0:0:7,19:248,648:-72.6348,-52.4286,-50.3214,-20.1979,0,-14.4783	1/2:37:0,21,16:0:0:21,16:737,536:-103.728,-43.7403,-37.4186,-60.329,0,-55.5125	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	1/1:32:0,32,0:0:0:32,0:1132,0:-102.189,-9.63296,0,-102.189,-9.63296,-102.189	1/2:103:0,68,35:0:0:68,35:2405,1197:-293.381,-97.4915,-77.0215,-196.235,0,-185.699	1/2:82:0,42,40:0:0:42,40:1491,1396:-235.37,-113.881,-101.238,-121.841,0,-109.799	1/2:24:0,12,12:0:0:12,12:424,426:-69.5951,-35.065,-31.4526,-34.8841,0,-31.2717	1/2:55:0,36,19:0:0:36,19:1255,669:-156.879,-54.8157,-43.9787,-102.414,0,-96.6948	1/2:43:0,18,24:0:0:18,24:648,837:-120.958,-68.0795,-62.6609,-52.8915,0,-45.6667	1/1:61:0,61,0:0:0:61,0:2180,0:-196.466,-18.3628,0,-196.466,-18.3628,-196.466	.:.:.:.:.:.:.:.	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/1:3:0,3,0:0:0:3,0:99,0:-9.23658,-0.90309,0,-9.23658,-0.90309,-9.23658	1/1:5:0,5,0:0:0:5,0:163,0:-14.9914,-1.50515,0,-14.9914,-1.50515,-14.9914	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:124:0,124,0:0:0:124,0:4395,0:-395.724,-37.3277,0,-395.724,-37.3277,-395.724	1/1:46:0,46,0:0:0:46,0:1609,0:-145.097,-13.8474,0,-145.097,-13.8474,-145.097	1/2:44:0,14,30:0:0:14,30:496,1033:-124.655,-84.2458,-80.0313,-40.7598,0,-31.7289	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:36:0,24,12:0:0:24,12:846,415:-102.954,-34.0681,-26.8434,-69.2337,0,-65.6214	1/2:16:0,5,11:0:0:5,11:176,394:-46.8163,-32.4902,-30.985,-14.6799,0,-11.3685	1/2:46:0,24,22:0:0:24,22:860,777:-133.761,-63.6196,-56.3949,-70.4971,0,-63.8745	1/2:31:0,18,13:0:0:18,13:648,443:-89.1661,-36.2814,-30.8629,-53.2333,0,-49.32	1/1:31:0,31,0:0:0:31,0:1095,0:-98.8591,-9.33193,0,-98.8591,-9.33193,-98.8591	1/2:47:0,36,11:0:0:36,11:1271,370:-133.828,-30.3119,-19.4749,-103.856,0,-100.545	1/2:27:0,10,16:0:0:10,16:352,565:-74.6535,-45.998,-42.9877,-28.6488,0,-23.8323	1/2:55:0,29,26:0:0:29,26:1032,879:-155.703,-71.5861,-62.8563,-84.4636,0,-76.6368	1/2:22:1,10,11:1:25:10,11:352,376:-57.0183,-28.6585,-27.5894,-26.8091,0,-25.4373	1/1:29:0,29,0:0:0:29,0:1021,0:-92.2003,-8.72987,0,-92.2003,-8.72987,-92.2003	1/1:29:1,28,0:1:29:28,0:989,0:-86.4224,-5.83021,0,-86.7234,-8.42884,-89.0299	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:52:0,52,0:0:0:52,0:1855,0:-167.229,-15.6536,0,-167.229,-15.6536,-167.229	1/2:17:0,8,8:0:0:8,8:288,287:-47.0212,-23.5151,-21.1068,-23.6059,0,-21.1976	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:55:0,40,15:0:0:40,15:1407,538:-158.762,-44.2342,-32.193,-114.885,0,-110.369	1/2:64:0,38,26:0:0:38,26:1340,901:-182.688,-73.5761,-62.137,-109.461,0,-101.634	1/2:5:0,2,3:0:0:2,3:63,108:-14.2203,-9.17208,-8.57002,-5.38109,0,-4.478	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:40:0,25,14:0:0:25,14:896,501:-113.938,-40.8606,-33.3348,-73.094,0,-68.8796	1/1:56:0,56,0:0:0:56,0:1981,0:-178.563,-16.8577,0,-178.563,-16.8577,-178.563	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:52:0,30,22:0:0:30,22:1064,751:-147.969,-61.2754,-52.2445,-87.0408,0,-80.4181	1/1:65:0,65,0:0:0:65,0:2316,0:-208.701,-19.567,0,-208.701,-19.567,-208.701	1/2:9:0,5,4:0:0:5,4:180,133:-25.7966,-11.0942,-9.58908,-15.0469,0,-13.8428	1/1:20:0,20,0:0:0:20,0:707,0:-63.9546,-6.0206,0,-63.9546,-6.0206,-63.9546	1/2:56:0,35,19:0:0:35,19:1238,655:-154.155,-53.3076,-42.7715,-100.952,0,-95.2322	1/2:42:0,12,30:0:0:12,30:432,1042:-120.309,-85.0565,-81.4441,-35.6088,0,-26.5779	1/1:14:0,14,0:0:0:14,0:500,0:-45.3362,-4.21442,0,-45.3362,-4.21442,-45.3362	1/1:43:0,43,0:0:0:43,0:1528,0:-137.813,-12.9443,0,-137.813,-12.9443,-137.813	1/1:34:0,34,0:0:0:34,0:1214,0:-109.565,-10.235,0,-109.565,-10.235,-109.565	1/2:18:0,13,5:0:0:13,5:460,170:-51.6071,-14.1288,-10.2154,-37.822,0,-36.3168	1/1:79:0,79,0:0:0:79,0:2819,0:-253.949,-23.7814,0,-253.949,-23.7814,-253.949	1/1:54:0,54,0:0:0:54,0:1903,0:-171.544,-16.2556,0,-171.544,-16.2556,-171.544	1/1:54:0,54,0:0:0:54,0:1903,0:-171.545,-16.2556,0,-171.545,-16.2556,-171.545	1/1:46:0,46,0:0:0:46,0:1639,0:-147.798,-13.8474,0,-147.798,-13.8474,-147.798	1/2:16:0,11,5:0:0:11,5:396,168:-46.2716,-13.9435,-10.6322,-32.6714,0,-31.1663	1/2:28:0,14,14:0:0:14,14:496,497:-81.2488,-40.8434,-36.629,-40.7598,0,-36.5454	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.0469,0,-14.4449	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/1:100:0,100,0:0:0:100,0:3547,0:-319.438,-30.103,0,-319.438,-30.103,-319.438	1/1:37:1,36,0:1:29:36,0:1280,0:-112.604,-8.23845,0,-112.905,-10.8371,-115.212	1/1:39:0,39,0:0:0:39,0:1377,0:-124.227,-11.7402,0,-124.227,-11.7402,-124.227	1/2:25:0,10,15:0:0:10,15:360,522:-72.1697,-42.7907,-39.7804,-29.734,0,-25.2186	1/1:66:0,66,0:0:0:66,0:2334,0:-210.319,-19.868,0,-210.319,-19.868,-210.319	1/2:16:0,9,7:0:0:9,7:320,236:-45.5489,-19.4609,-16.7516,-26.4331,0,-24.3259	1/2:47:0,24,23:0:0:24,23:864,804:-136.259,-65.7558,-58.531,-70.8578,0,-63.9342	1/1:44:0,44,0:0:0:44,0:1533,0:-138.257,-13.2453,0,-138.257,-13.2453,-138.257	1/1:29:0,29,0:0:0:29,0:1029,0:-92.9211,-8.72987,0,-92.9211,-8.72987,-92.9211	1/2:84:0,29,55:0:0:29,55:1028,1897:-238.186,-154.434,-145.704,-84.1032,0,-67.5465	1/2:47:0,16,31:0:0:16,31:564,1049:-131.306,-85.38,-80.5635,-46.2738,0,-36.9419	1/1:54:0,53,0:0:0:53,0:1881,0:-169.355,-15.9546,0,-169.355,-15.9546,-169.355	1/1:56:1,55,0:1:32:55,0:1945,0:-172.125,-13.6584,0,-172.426,-16.5567,-175.003
chr04	14558656	.	A	G	107041	PASS	AB=0.576044;ABP=167.807;AC=141;AF=0.75;AN=188;AO=5120;CIGAR=1X;DP=6530;DPB=6530;DPRA=70.2043;EPP=11120.9;EPPR=3058.27;GTI=3;LEN=1;MEANALT=1.03226;MQM=59.3687;MQMR=59.99;NS=94;NUMALT=1;ODDS=1.3363;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182339;QR=50200;RO=1407;RPL=0;RPP=11120.9;RPPR=3058.27;RPR=5120;RUN=1;SAF=0;SAP=11120.9;SAR=5120;SRF=0;SRP=3058.27;SRR=1407;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:17,25:17:608:25:886:-67.3824,0,-42.4088	1/1:126:0,126:0:0:126:4477:-402.641,-37.9298,0	1/1:84:0,84:0:0:84:2994:-269.618,-25.2865,0	1/1:101:0,100:0:0:100:3567:-320.794,-30.103,0	1/1:31:0,31:0:0:31:1108:-100.017,-9.33193,0	1/1:36:0,36:0:0:36:1288:-116.201,-10.8371,0	0/1:88:47,41:47:1669:41:1416:-101.233,0,-124.005	0/1:66:18,48:18:648:48:1720:-135.215,0,-38.7839	0/1:86:47,39:47:1684:39:1396:-100.05,0,-125.958	1/1:80:0,80:0:0:80:2863:-257.84,-24.0824,0	1/1:59:0,59:0:0:59:2112:-190.12,-17.7608,0	1/1:66:1,65:1:36:65:2296:-203.185,-16.2697,0	1/1:45:0,45:0:0:45:1600:-144.233,-13.5464,0	1/1:73:0,73:0:0:73:2580:-232.421,-21.9752,0	1/1:38:0,38:0:0:38:1329:-119.869,-11.4391,0	0/1:34:14,20:14:500:20:720:-54.8876,0,-35.1012	1/1:67:0,67:0:0:67:2385:-214.882,-20.169,0	0/1:39:19,20:19:672:20:720:-53.3661,0,-49.0667	0/1:23:9,14:9:315:14:500:-38.3674,0,-21.7635	0/1:49:27,22:27:972:22:782:-55.9461,0,-73.0474	0/1:198:79,119:79:2836:119:4250:-323.04,0,-195.874	0/1:49:21,28:21:752:28:1008:-76.2297,0,-53.2558	0/1:100:40,60:40:1432:60:2115:-160.449,0,-99.0746	1/1:101:7,94:7:252:94:3345:-278.214,-7.37507,0	1/1:46:0,45:0:0:45:1562:-140.637,-13.5464,0	0/1:174:65,109:65:2312:109:3912:-299.8,0,-155.959	0/1:128:44,84:44:1576:84:2993:-231.018,0,-103.6	0/1:18:12,6:12:424:6:203:-13.1826,0,-33.0779	0/1:153:54,99:54:1936:99:3547:-273.255,0,-128.423	0/1:88:31,57:31:1112:57:2032:-156.573,0,-73.9007	1/1:102:0,102:0:0:102:3653:-328.926,-30.7051,0	0/1:7:5,2:5:180:2:72:-4.723,0,-14.4449	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:177:0,177:0:0:177:6313:-568.107,-53.2823,0	1/1:139:0,139:0:0:139:4955:-445.995,-41.8432,0	0/1:38:11,27:11:392:27:968:-75.9533,0,-24.1809	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978	0/1:47:21,26:21:752:26:932:-70.0367,0,-53.8578	0/1:26:14,12:14:500:12:432:-31.3944,0,-37.5094	0/1:66:23,43:23:824:43:1544:-119.325,0,-54.6153	0/1:68:37,31:37:1316:31:1105:-79.2747,0,-98.2718	1/1:43:0,43:0:0:43:1514:-136.489,-12.9443,0	0/1:64:34,30:34:1207:30:1072:-77.4511,0,-89.6694	0/1:31:13,18:13:468:18:636:-48.1951,0,-33.1277	0/1:47:16,31:16:567:31:1086:-83.8945,0,-37.2123	0/1:57:16,41:16:576:41:1457:-114.251,0,-35.0163	1/1:129:3,126:3:108:126:4429:-388.605,-28.7577,0	1/1:147:0,147:0:0:147:5259:-473.01,-44.2514,0	1/1:8:0,8:0:0:8:284:-25.8672,-2.40824,0	1/1:68:0,68:0:0:68:2417:-217.733,-20.47,0	0/1:69:22,47:22:792:47:1673:-130.076,0,-50.8346	1/1:16:0,16:0:0:16:574:-51.9799,-4.81648,0	0/1:45:10,34:10:356:34:1211:-95.6614,0,-18.7765	0/1:345:133,212:133:4710:212:7603:-580.26,0,-320.204	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:3,5:3:108:5:180:-14.1434,0,-7.66693	0/1:81:31,50:31:1108:50:1759:-134.206,0,-75.6476	1/1:105:2,103:2:72:103:3672:-323.756,-24.7714,0	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	0/1:100:35,65:35:1251:65:2315:-178.389,0,-82.7913	1/1:190:1,189:1:36:189:6716:-600.757,-53.5974,0	0/1:30:8,22:8:273:22:788:-62.2135,0,-15.8693	1/1:32:0,32:0:0:32:1135:-102.44,-9.63296,0	0/1:204:92,112:92:3300:112:4001:-298.564,0,-235.808	0/1:55:31,24:31:1116:24:860:-61.109,0,-84.195	1/1:27:0,27:0:0:27:964:-86.8727,-8.12781,0	1/1:14:1,13:1:36:13:468:-38.7986,-0.616145,0	1/1:80:0,80:0:0:80:2822:-253.587,-24.0824,0	0/1:23:9,14:9:320:14:491:-37.5949,0,-22.2187	1/1:73:1,72:1:36:72:2563:-227.241,-18.3769,0	1/1:49:0,49:0:0:49:1725:-155.244,-14.7505,0	1/1:117:0,117:0:0:117:4176:-375.967,-35.2205,0	1/1:87:0,87:0:0:87:3068:-276.288,-26.1896,0	0/1:38:15,23:15:536:23:824:-63.0217,0,-37.1357	0/1:54:22,32:22:783:32:1129:-85.3427,0,-54.5373	0/1:14:2,12:2:72:12:415:-33.4433,0,-2.6223	1/1:48:0,48:0:0:48:1728:-155.791,-14.4494,0	1/1:25:0,25:0:0:25:887:-80.1475,-7.52575,0	1/1:88:0,88:0:0:88:3140:-282.782,-26.4906,0	1/1:94:0,94:0:0:94:3368:-303.018,-28.2968,0	1/1:35:0,35:0:0:35:1229:-110.799,-10.5361,0	0/1:98:45,53:45:1612:53:1904:-142.096,0,-115.869	1/1:141:0,141:0:0:141:5032:-452.914,-42.4452,0	0/1:29:18,11:18:648:11:384:-26.1418,0,-49.922	0/1:81:52,29:52:1828:29:1036:-69.0608,0,-140.415	1/1:46:0,46:0:0:46:1650:-148.676,-13.8474,0	1/1:67:0,67:0:0:67:2388:-215.147,-20.169,0	0/1:92:48,44:48:1711:44:1576:-114.409,0,-126.58	0/1:119:78,41:78:2771:41:1472:-96.9532,0,-213.809	1/1:55:0,55:0:0:55:1964:-176.984,-16.5567,0	1/1:79:0,79:0:0:79:2823:-254.146,-23.7814,0
chr04	14558675	.	T	C	109876	PASS	AB=0.57117;ABP=148.9;AC=141;AF=0.75;AN=188;AO=5125;CIGAR=1X;DP=6564;DPB=6564;DPRA=70.5699;EPP=10752.9;EPPR=3022.09;GTI=4;LEN=1;MEANALT=1.05376;MQM=59.3774;MQMR=60;NS=94;NUMALT=1;ODDS=0.0639611;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183178;QR=51462;RO=1434;RPL=5081;RPP=10752.9;RPPR=3022.09;RPR=44;RUN=1;SAF=0;SAP=11131.8;SAR=5125;SRF=0;SRP=3116.9;SRR=1434;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:17,25:17:612:25:885:-67.2955,0,-42.7702	1/1:125:0,124:0:0:124:4407:-395.945,-37.3277,0	1/1:84:0,84:0:0:84:3001:-270.216,-25.2865,0	1/1:102:0,102:0:0:102:3649:-328.498,-30.7051,0	1/1:32:0,32:0:0:32:1152:-103.976,-9.63296,0	1/1:36:0,36:0:0:36:1296:-116.922,-10.8371,0	0/1:89:48,41:48:1713:41:1468:-105.618,0,-127.662	0/1:69:19,50:19:684:50:1788:-140.426,0,-41.1193	0/1:87:48,39:48:1716:39:1400:-100.109,0,-128.536	1/1:81:0,81:0:0:81:2912:-262.24,-24.3834,0	1/1:60:0,60:0:0:60:2160:-194.437,-18.0618,0	1/1:65:0,65:0:0:65:2305:-207.672,-19.567,0	1/1:45:0,45:0:0:45:1612:-145.207,-13.5464,0	1/1:73:0,73:0:0:73:2590:-233.319,-21.9752,0	1/1:38:0,38:0:0:38:1338:-120.679,-11.4391,0	0/1:35:15,20:15:536:20:720:-54.5865,0,-38.0388	1/1:67:0,67:0:0:67:2408:-216.952,-20.169,0	0/1:39:19,20:19:669:20:720:-53.3661,0,-48.7938	0/1:24:10,14:10:360:14:499:-37.9866,0,-25.5196	0/1:52:28,24:28:1008:24:860:-62.0121,0,-75.3828	0/1:198:81,117:81:2912:117:4161:-315.041,0,-202.711	0/1:49:21,28:21:756:28:995:-75.0574,0,-53.6168	0/1:100:40,60:40:1440:60:2160:-164.456,0,-99.7947	1/1:100:7,93:7:252:93:3331:-276.952,-7.07404,0	1/1:45:0,45:0:0:45:1612:-145.356,-13.5464,0	0/1:178:68,110:68:2444:110:3953:-302.294,0,-166.631	0/1:128:44,84:44:1576:84:3016:-233.083,0,-103.6	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	0/1:157:54,101:54:1929:101:3577:-275.064,0,-126.939	0/1:90:33,57:33:1184:57:2033:-156.138,0,-79.7756	1/1:100:0,100:0:0:100:3584:-322.721,-30.103,0	0/1:7:5,2:5:180:2:72:-4.723,0,-14.4449	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:177:0,177:0:0:177:6345:-571.01,-53.2823,0	1/1:140:0,140:0:0:140:5002:-450.19,-42.1442,0	0/1:38:11,27:11:396:27:972:-76.3139,0,-24.5436	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:47:21,26:21:741:26:936:-70.3973,0,-52.8632	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:66:23,43:23:813:43:1520:-117.171,0,-53.6211	0/1:67:37,30:37:1328:30:1076:-76.9567,0,-99.6532	1/1:44:0,44:0:0:44:1565:-141.136,-13.2453,0	0/1:66:35,31:35:1260:31:1097:-79.0946,0,-93.8375	0/1:31:13,18:13:468:18:648:-49.279,0,-33.1277	0/1:50:18,32:18:648:32:1137:-87.5809,0,-43.6004	0/1:57:16,41:16:576:41:1464:-114.85,0,-35.0163	1/1:127:3,124:3:108:124:4422:-387.586,-28.1556,0	1/1:147:0,146:0:0:146:5232:-470.565,-43.9504,0	1/1:8:0,8:0:0:8:284:-25.8672,-2.40824,0	1/1:68:0,68:0:0:68:2444:-220.161,-20.47,0	0/1:69:22,47:22:792:47:1677:-130.436,0,-50.8346	1/1:16:0,16:0:0:16:576:-52.1525,-4.81648,0	0/1:46:11,35:11:396:35:1260:-99.8157,0,-22.1354	0/1:345:134,211:134:4820:211:7557:-576.092,0,-330.097	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:4,5:4:144:5:180:-13.8424,0,-10.6043	0/1:84:34,50:34:1224:50:1781:-135.284,0,-85.1805	1/1:105:2,103:2:72:103:3704:-326.615,-24.7714,0	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	0/1:98:35,62:35:1256:62:2217:-170.101,0,-83.7856	1/1:190:1,189:1:36:189:6729:-601.905,-53.5974,0	0/1:30:8,22:8:284:22:788:-62.2135,0,-16.8725	1/1:30:0,30:0:0:30:1080:-97.5128,-9.0309,0	0/1:210:96,114:96:3448:114:4066:-302.617,0,-247.316	0/1:54:31,23:31:1116:23:828:-58.5323,0,-84.4961	1/1:27:0,27:0:0:27:972:-87.5938,-8.12781,0	1/1:14:1,13:1:36:13:468:-38.7986,-0.616145,0	1/1:80:0,80:0:0:80:2857:-257.091,-24.0824,0	0/1:23:9,14:9:324:14:489:-37.4124,0,-22.5822	1/1:74:0,74:0:0:74:2618:-235.778,-22.2762,0	1/1:50:0,50:0:0:50:1738:-156.541,-15.0515,0	1/1:117:0,117:0:0:117:4170:-375.419,-35.2205,0	1/1:87:0,87:0:0:87:3117:-280.635,-26.1896,0	0/1:39:16,23:16:576:23:824:-62.7207,0,-40.4348	0/1:53:21,32:21:756:32:1148:-87.3572,0,-52.4126	0/1:14:2,12:2:72:12:417:-33.6232,0,-2.6223	1/1:48:0,48:0:0:48:1728:-155.791,-14.4494,0	1/1:26:0,26:0:0:26:932:-84.1973,-7.82678,0	1/1:87:0,87:0:0:87:3124:-281.342,-26.1896,0	1/1:94:0,94:0:0:94:3380:-304.096,-28.2968,0	1/1:35:0,35:0:0:35:1260:-113.553,-10.5361,0	0/1:99:46,53:46:1641:53:1900:-141.432,0,-118.175	1/1:141:0,141:0:0:141:4992:-449.302,-42.4452,0	0/1:29:18,11:18:648:11:396:-27.2299,0,-49.922	0/1:81:52,29:52:1872:29:1044:-69.7817,0,-144.376	1/1:46:0,46:0:0:46:1647:-148.422,-13.8474,0	1/1:67:0,67:0:0:67:2404:-216.569,-20.169,0	0/1:93:49,44:49:1756:44:1569:-113.476,0,-130.328	0/1:120:79,41:79:2844:41:1472:-96.6521,0,-220.074	1/1:55:0,55:0:0:55:1960:-176.625,-16.5567,0	1/1:80:0,80:0:0:80:2876:-258.827,-24.0824,0
chr04	14558750	.	AGTC	GGTA,GGTC	232299	PASS	AB=0.358028,0.63808;ABP=1217.66,1151.99;AC=138,50;AF=0.734043,0.265957;AN=188;AO=7037,4541;CIGAR=1X2M1X,1X3M;DP=11623;DPB=11623.5;DPRA=17.8433,1.7674;EPP=15283.7,9854.98;EPPR=7.35324;GTI=10;LEN=4,1;MEANALT=2.01075,2.47273;MQM=59.9378,41.8536;MQMR=30;NS=94;NUMALT=2;ODDS=17520.6;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=16,16;PQR=0;PRO=0;QA=243370,132019;QR=60;RO=2;RPL=7025,2380;RPP=15179.6,25.9449;RPPR=7.35324;RPR=12,2161;RUN=1,1;SAF=7025,2379;SAP=15179.6,25.5279;SAR=12,2162;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:28:0,6,22:0:0:6,22:207,552:-55.8475,-39.0063,-37.2001,-17.1612,0,-10.5386	1/1:172:0,171,0:0:0:171,0:5915,0:-532.067,-51.4761,0,-532.067,-51.4761,-532.067	1/1:226:0,226,0:0:0:226,0:7879,0:-709.152,-68.0328,0,-709.152,-68.0328,-709.152	1/1:360:0,354,5:0:0:354,5:12173,180:-1094.95,-106.565,0,-1080.26,-91.8775,-1078.76	1/1:119:0,117,2:0:0:117,2:4039,57:-363.395,-35.2205,0,-359.139,-30.6935,-358.537	1/1:69:0,68,0:0:0:68,0:2307,0:-207.543,-20.47,0,-207.543,-20.47,-207.543	1/2:160:0,57,102:0:0:57,102:1985,2649:-350.283,-188.987,-171.828,-161.247,0,-130.542	1/2:265:0,79,186:0:0:79,186:2727,5503:-638.892,-417.334,-393.553,-221.885,0,-165.893	1/2:76:0,33,43:0:0:33,43:1136,1177:-178.756,-86.5595,-76.6255,-92.5024,0,-79.5581	1/1:113:0,111,0:0:0:111,0:3823,0:-343.914,-33.4143,0,-343.914,-33.4143,-343.914	1/1:47:0,47,0:0:0:47,0:1592,0:-143.564,-14.1484,0,-143.564,-14.1484,-143.564	1/1:58:0,58,0:0:0:58,0:2004,0:-180.631,-17.4597,0,-180.631,-17.4597,-180.631	1/1:64:0,64,0:0:0:64,0:2222,0:-200.244,-19.2659,0,-200.244,-19.2659,-200.244	1/1:37:0,37,0:0:0:37,0:1284,0:-115.844,-11.1381,0,-115.844,-11.1381,-115.844	1/1:69:0,69,0:0:0:69,0:2374,0:-213.918,-20.7711,0,-213.918,-20.7711,-213.918	1/2:71:0,26,45:0:0:26,45:910,1260:-167.416,-93.3464,-85.5197,-74.3878,0,-60.8414	1/1:61:0,61,0:0:0:61,0:2107,0:-189.899,-18.3628,0,-189.899,-18.3628,-189.899	1/2:63:0,16,47:0:0:16,47:536,1296:-138.951,-95.5264,-90.7099,-43.74,0,-29.5916	1/2:76:0,31,45:0:0:31,45:1067,1208:-174.59,-87.8907,-78.5588,-87.0046,0,-73.4583	1/2:295:0,138,156:0:0:138,156:4820,4620:-743.198,-351.114,-309.571,-392.043,0,-345.083	1/2:217:0,71,145:0:0:71,145:2455,4025:-496.403,-296.889,-275.516,-199.473,0,-155.824	1/2:120:0,26,94:0:0:26,94:915,2842:-291.38,-216.885,-209.058,-74.8328,0,-46.536	1/2:115:0,55,60:0:0:55,60:1878,1957:-307.222,-154.814,-138.258,-152.738,0,-134.677	1/2:147:0,127,19:0:0:127,19:4373,612:-403.423,-48.2201,-9.9893,-355.164,0,-349.445	1/1:47:0,46,0:0:0:46,0:1614,0:-145.228,-13.8474,0,-145.228,-13.8474,-145.228	1/2:427:0,141,282:0:0:141,282:4921,8378:-1033.65,-633.744,-591.299,-399.979,0,-315.089	1/2:316:0,121,193:0:0:121,193:4205,5475:-749.405,-407.509,-371.084,-341.854,0,-283.755	1/2:45:0,11,34:0:0:11,34:380,997:-106.323,-75.432,-72.1206,-31.2202,0,-20.9852	1/2:411:0,155,255:0:0:155,255:5420,7769:-1035.7,-594.749,-548.089,-441.025,0,-364.262	1/2:187:0,67,120:0:0:67,120:2299,3371:-436.611,-249.969,-229.8,-186.956,0,-150.833	1/1:122:0,122,0:0:0:122,0:4172,0:-375.675,-36.7257,0,-375.675,-36.7257,-375.675	1/2:19:0,5,14:0:0:5,14:169,352:-38.4515,-24.723,-23.2179,-14.0374,0,-9.82296	1/2:28:0,9,19:0:0:9,19:314,516:-63.6111,-38.0419,-35.3326,-25.8877,0,-20.1681	1/1:5:0,5,0:0:0:5,0:172,0:-15.8179,-1.50515,0,-15.8179,-1.50515,-15.8179	1/1:21:0,21,0:0:0:21,0:721,0:-65.2067,-6.32163,0,-65.2067,-6.32163,-65.2067	1/1:14:0,14,0:0:0:14,0:491,0:-44.5215,-4.21442,0,-44.5215,-4.21442,-44.5215	1/1:163:0,163,0:0:0:163,0:5634,0:-507.183,-49.0679,0,-507.183,-49.0679,-507.183	1/1:181:0,178,0:0:0:178,0:6191,0:-556.839,-53.5833,0,-556.839,-53.5833,-556.839	1/2:106:0,24,81:0:0:24,81:828,2340:-242.565,-175.284,-168.059,-67.2509,0,-42.8675	2/2:7:0,0,7:0:0:0,7:0,208:-18.4632,-18.4632,-18.4632,-2.10721,-2.10721,0	1/2:342:2,129,210:2:60:129,210:4512,6080:-819.662,-453.163,-418.586,-362.903,0,-303.942	1/2:51:0,11,40:0:0:11,40:380,1164:-118.773,-87.8839,-84.5726,-31.22,0,-19.1788	1/2:284:0,100,184:0:0:100,184:3428,5463:-694.821,-416.507,-386.404,-278.636,0,-223.247	1/2:117:0,36,81:0:0:36,81:1222,2366:-278.184,-179.066,-168.229,-99.4384,0,-75.055	1/1:64:0,64,0:0:0:64,0:2180,0:-196.464,-19.2659,0,-196.464,-19.2659,-196.464	1/2:159:0,64,95:0:0:64,95:2198,2781:-387.648,-209.146,-189.88,-178.819,0,-150.221	1/2:233:0,83,150:0:0:83,150:2863,4411:-566.114,-333.514,-308.528,-232.922,0,-187.768	1/2:262:0,90,172:0:0:90,172:3106,5129:-643.211,-390.862,-363.769,-252.674,0,-200.897	1/2:184:0,79,104:0:0:79,104:2749,2963:-444.888,-221.331,-197.55,-223.659,0,-192.352	1/1:153:0,153,0:0:0:153,0:5291,0:-476.337,-46.0576,0,-476.337,-46.0576,-476.337	1/1:235:0,234,1:0:0:234,1:8139,36:-732.182,-70.441,0,-729.245,-67.1438,-728.944	1/1:3:0,3,0:0:0:3,0:107,0:-9.98217,-0.90309,0,-9.98217,-0.90309,-9.98217	1/1:137:0,132,3:0:0:132,3:4574,78:-411.552,-39.736,0,-405.893,-34.1269,-404.99	2/2:95:0,4,91:0:0:4,91:138,2284:-185.611,-174.395,-173.191,-27.3937,-15.8378,0	1/1:18:0,18,0:0:0:18,0:615,0:-55.6703,-5.41854,0,-55.6703,-5.41854,-55.6703	1/2:166:0,48,118:0:0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chr04	14706219	.	C	T	159817	PASS	AB=0.463127;ABP=68.1856;AC=143;AF=0.760638;AN=188;AO=7652;CIGAR=1X;DP=10637;DPB=10637;DPRA=0;EPP=16619.1;EPPR=4893.22;GTI=3;LEN=1;MEANALT=1.04255;MQM=59.9328;MQMR=59.6827;NS=94;NUMALT=1;ODDS=0.575202;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=274112;QR=105772;RO=2981;RPL=0;RPP=16619.1;RPPR=4893.22;RPR=7652;RUN=1;SAF=7652;SAP=16619.1;SAR=0;SRF=2981;SRP=6476.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:25,19:25:892:19:684:-48.2852,0,-66.5657	1/1:161:0,161:0:0:161:5759:-518.425,-48.4658,0	1/1:262:0,262:0:0:262:9394:-845.417,-78.8699,0	1/1:264:0,264:0:0:264:9480:-853.126,-79.4719,0	1/1:144:1,143:1:36:143:5120:-457.341,-39.75,0	1/1:106:1,105:1:36:105:3764:-335.361,-28.3109,0	0/1:159:91,68:91:3239:68:2429:-171.001,0,-243.521	0/1:180:93,87:93:3294:87:3102:-225.221,0,-241.956	0/1:137:56,81:56:2000:81:2908:-220.488,0,-138.541	1/1:72:0,72:0:0:72:2571:-231.639,-21.6742,0	1/1:56:0,56:0:0:56:2000:-180.27,-16.8577,0	1/1:83:0,83:0:0:83:2984:-268.791,-24.9855,0	1/1:56:0,56:0:0:56:1999:-180.182,-16.8577,0	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0	1/1:50:1,49:1:32:49:1764:-155.844,-11.8522,0	0/1:44:23,21:23:820:21:752:-54.7609,0,-60.8757	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	0/1:58:30,28:30:1076:28:1008:-73.5766,0,-79.6931	0/1:35:22,13:22:788:13:468:-31.9236,0,-60.7087	0/1:368:194,174:194:6851:174:6249:-451.722,0,-505.253	0/1:155:74,81:74:2619:81:2904:-214.936,0,-189.276	0/1:186:121,65:121:4291:65:2323:-153.32,0,-330.334	0/1:96:55,41:55:1955:41:1457:-102.525,0,-146.306	1/1:128:9,119:9:320:119:4260:-354.405,-9.38948,0	1/1:83:0,83:0:0:83:2988:-269.14,-24.9855,0	0/1:366:203,163:203:7157:163:5846:-416.055,0,-533.851	0/1:221:118,103:118:4189:103:3696:-266.314,0,-310.666	0/1:38:21,17:21:739:17:608:-43.6129,0,-55.3932	0/1:421:219,201:219:7758:201:7198:-521.081,0,-570.511	0/1:98:54,44:54:1936:44:1584:-113.351,0,-145.015	1/1:153:0,153:0:0:153:5435:-489.009,-46.0576,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:240:-21.9341,-2.10721,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:179:0,179:0:0:179:6440:-579.683,-53.8844,0	1/1:232:3,228:3:108:228:8168:-725.049,-59.7927,0	0/1:61:25,36:25:880:36:1296:-98.5811,0,-61.1549	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:201:92,109:92:3258:109:3911:-291.657,0,-232.934	0/1:51:27,24:27:968:24:864:-62.73,0,-72.0848	0/1:197:120,77:120:4249:77:2768:-190.058,0,-323.289	0/1:80:45,35:45:1608:35:1245:-88.2474,0,-120.928	1/1:58:0,58:0:0:58:2079:-187.38,-17.4597,0	0/1:119:68,51:68:2412:51:1809:-127.259,0,-180.875	0/1:168:101,66:101:3599:66:2343:-160.479,0,-273.296	0/1:91:62,29:62:2207:29:1029:-65.5274,0,-171.495	0/1:136:68,68:68:2415:68:2436:-178.555,0,-176.637	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	1/1:192:0,192:0:0:192:6875:-618.591,-57.7978,0	1/1:6:0,6:0:0:6:197:-18.0513,-1.80618,0	1/1:193:0,193:0:0:193:6900:-621.035,-58.0988,0	0/1:41:20,21:20:707:21:752:-55.664,0,-51.5947	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:192:95,97:95:3350:97:3473:-254.953,0,-243.894	0/1:40:24,16:24:829:16:572:-39.7722,0,-62.8827	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:10:7,3:7:248:3:108:-7.04666,0,-19.6251	0/1:127:77,50:77:2756:50:1792:-123.332,0,-210.023	1/1:92:1,91:1:36:91:3264:-290.382,-24.0965,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:279:128,151:128:4543:151:5386:-400.88,0,-323.826	1/1:234:3,231:3:108:231:8282:-735.287,-60.3659,0	0/1:79:34,45:34:1207:45:1612:-121.589,0,-85.1433	1/1:109:0,109:0:0:109:3891:-350.298,-32.8123,0	0/1:191:91,100:91:3213:100:3571:-264.045,0,-231.875	0/1:102:66,36:66:2346:36:1285:-85.2473,0,-179.835	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:97:0,97:0:0:97:3471:-312.601,-29.1999,0	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	0/1:14:10,4:10:347:4:144:-9.0992,0,-27.3492	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	1/1:102:0,102:0:0:102:3668:-329.866,-30.7051,0	1/1:142:0,142:0:0:142:5059:-455.446,-42.7463,0	1/1:232:0,232:0:0:232:8313:-748.155,-69.839,0	0/1:194:104,90:104:3694:90:3228:-232.33,0,-274.227	0/1:174:87,87:87:3120:87:3120:-228.647,0,-227.592	0/1:10:5,5:5:167:5:180:-13.5418,0,-12.3481	1/1:156:0,156:0:0:156:5602:-504.299,-46.9607,0	1/1:122:0,122:0:0:122:4367:-393.185,-36.7257,0	1/1:253:1,252:1:36:252:9040:-809.89,-72.5623,0	1/1:82:0,82:0:0:82:2944:-265.18,-24.6845,0	1/1:60:0,60:0:0:60:2145:-193.316,-18.0618,0	0/1:66:33,33:33:1171:33:1188:-87.3606,0,-85.8287	1/1:139:0,139:0:0:139:4988:-449.067,-41.8432,0	0/1:50:17,33:17:603:33:1188:-92.1771,0,-39.5398	0/1:89:51,38:51:1824:38:1368:-96.6292,0,-137.649	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	1/1:44:0,44:0:0:44:1573:-141.86,-13.2453,0	0/1:72:45,27:45:1599:27:972:-66.1237,0,-122.525	0/1:69:54,15:54:1920:15:532:-27.442,0,-151.989	1/1:141:0,141:0:0:141:5058:-455.364,-42.4452,0	1/1:110:1,109:1:36:109:3911:-348.583,-29.515,0
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chr04	14925364	.	T	G	30435.5	PASS	AB=0.5046;ABP=3.66955;AC=47;AF=0.25;AN=188;AO=1816;CIGAR=1X;DP=7252;DPB=7252;DPRA=0.969249;EPP=3946.4;EPPR=11768.1;GTI=0;LEN=1;MEANALT=1.02;MQM=59.967;MQMR=59.9693;NS=94;NUMALT=1;ODDS=5.24466;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64825;QR=194628;RO=5434;RPL=0;RPP=3946.4;RPPR=11768.1;RPR=1816;RUN=1;SAF=1816;SAP=3946.4;SAR=0;SRF=5434;SRP=11802.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:38,20:38:1368:20:708:-46.5859,0,-105.961	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/0:92:92,0:92:3312:0:0:0,-27.6948,-298.297	0/0:154:154,0:154:5532:0:0:0,-46.3586,-498.003	0/0:70:69,1:69:2476:1:36:0,-17.4738,-219.495	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:73:40,33:40:1440:33:1184:-84.8931,0,-107.923	0/1:100:53,47:53:1904:47:1662:-119.716,0,-141.535	0/1:129:58,71:58:2084:71:2548:-190.737,0,-148.807	0/0:87:87,0:87:3098:0:0:0,-26.1896,-279.045	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.888	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/1:55:29,26:29:1031:26:917:-66.288,0,-76.546	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:34:18,16:18:648:16:572:-41.5784,0,-48.4169	0/1:25:15,10:15:532:10:351:-24.4009,0,-40.6873	0/1:93:52,41:52:1845:41:1457:-103.428,0,-138.315	0/1:142:53,89:53:1884:89:3166:-242.394,0,-127.092	0/1:94:26,68:26:936:68:2436:-191.198,0,-56.2626	0/1:100:48,52:48:1724:52:1844:-136.128,0,-125.314	0/0:47:45,2:45:1597:2:72:0,-7.31169,-137.181	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.487	0/1:234:123,111:123:4412:111:3973:-287.318,0,-326.809	0/1:180:102,77:102:3630:77:2743:-193.015,0,-272.807	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:129:68,61:68:2440:61:2192:-158.713,0,-181.022	0/1:107:44,63:44:1576:63:2230:-168.751,0,-109.913	0/0:98:98,0:98:3478:0:0:0,-29.5009,-313.23	0/1:14:5,9:5:165:9:324:-25.2914,0,-10.9592	0/1:15:9,6:9:320:6:201:-13.9016,0,-24.6269	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:221:221,0:221:7894:0:0:0,-66.5276,-710.483	0/0:97:97,0:97:3465:0:0:0,-29.1999,-312.05	0/1:41:24,17:24:860:17:612:-43.0712,0,-65.3796	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:90:42,48:42:1508:48:1713:-127.361,0,-108.922	0/1:39:17,22:17:612:22:788:-59.5046,0,-43.6733	0/1:150:69,81:69:2472:81:2893:-215.45,0,-177.579	0/1:45:30,15:30:1080:15:536:-35.0285,0,-83.9669	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:132:74,58:74:2641:58:2087:-148.364,0,-198.199	0/1:103:56,47:56:1989:47:1680:-120.481,0,-148.276	0/1:131:49,82:49:1752:82:2940:-225.396,0,-118.524	0/1:89:49,40:49:1756:40:1417:-101.034,0,-131.426	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.072	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:101:101,0:101:3617:0:0:0,-30.404,-325.734	0/1:48:21,27:21:752:27:968:-72.9879,0,-53.5568	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:166:101,65:101:3616:65:2295:-156.836,0,-275.671	0/1:33:10,23:10:360:23:824:-64.5493,0,-22.8103	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:11:7,4:7:252:4:125:-8.24729,0,-19.7176	0/1:36:13,23:13:460:23:828:-64.007,0,-30.8983	0/0:97:94,3:94:3376:3:108:0,-19.1247,-293.98	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:176:93,83:93:3336:83:2958:-213.47,0,-247.476	0/0:100:100,0:100:3577:0:0:0,-30.103,-322.136	0/1:65:36,29:36:1292:29:1044:-74.7079,0,-97.0168	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:92:48,44:48:1716:44:1557:-112.725,0,-127.031	0/1:70:27,43:27:942:43:1540:-117.821,0,-64.0177	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1907	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:27:18,9:18:644:9:320:-21.0145,0,-50.1628	0/0:168:168,0:168:6004:0:0:0,-50.573,-540.467	0/0:106:106,0:106:3777:0:0:0,-31.9092,-340.128	0/0:120:120,0:120:4316:0:0:0,-36.1236,-388.614	0/0:156:156,0:156:5589:0:0:0,-46.9607,-503.085	0/1:68:21,47:21:756:47:1688:-131.737,0,-47.8972	0/1:74:33,41:33:1188:41:1472:-110.5,0,-84.9524	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:103:103,0:103:3689:0:0:0,-31.0061,-332.211	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:170:169,0:169:6072:0:0:0,-50.8741,-546.251	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:39:21,18:21:752:18:644:-46.5504,0,-56.2661	0/0:150:150,0:150:5388:0:0:0,-45.1545,-485.049	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:59:26,33:26:936:33:1184:-89.0791,0,-66.7987	0/0:80:80,0:80:2867:0:0:0,-24.0824,-258.266	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:66:38,28:38:1368:28:1008:-71.1684,0,-103.553	0/1:71:31,40:31:1116:40:1432:-107.804,0,-79.3786	0/0:180:180,0:180:6437:0:0:0,-54.1854,-579.416	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436
chr04	14925376	.	C	T	110240	PASS	AB=0.490313;ABP=5.87095;AC=141;AF=0.75;AN=188;AO=5272;CIGAR=1X;DP=7075;DPB=7075;DPRA=0;EPP=11407.6;EPPR=3898.65;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9649;MQMR=59.975;NS=94;NUMALT=1;ODDS=4.53375;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187634;QR=64227;RO=1802;RPL=5;RPP=11407.6;RPPR=3907.32;RPR=5267;RUN=1;SAF=5272;SAP=11451;SAR=0;SRF=1801;SRP=3907.32;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:19,37:19:680:37:1326:-102.785,0,-44.6715	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	1/1:90:0,90:0:0:90:3200:-288.224,-27.0927,0	1/1:147:0,147:0:0:147:5228:-470.662,-44.2514,0	1/1:68:1,67:1:36:67:2404:-213.018,-16.8718,0	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	0/1:73:33,40:33:1184:40:1404:-104.68,0,-84.8931	0/1:98:46,52:46:1640:52:1856:-137.819,0,-118.388	0/1:127:71,56:71:2548:56:1972:-139.435,0,-191.34	1/1:81:0,81:0:0:81:2878:-259.255,-24.3834,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:107:0,107:0:0:107:3818:-343.8,-32.2102,0	1/1:83:1,82:1:36:82:2908:-258.357,-21.3872,0	1/1:52:0,52:0:0:52:1859:-167.589,-15.6536,0	1/1:84:0,84:0:0:84:3007:-270.861,-25.2865,0	0/1:54:25,29:25:892:29:1002:-74.2317,0,-64.3441	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:33:15,18:15:528:18:644:-48.3566,0,-37.9174	0/1:25:10,15:10:352:15:540:-41.4108,0,-24.4924	0/1:88:39,49:39:1388:49:1747:-131.021,0,-98.7283	0/1:139:89,50:89:3200:50:1766:-117.379,0,-246.357	0/1:95:70,25:70:2498:25:896:-52.3625,0,-196.474	0/1:97:51,46:51:1802:46:1648:-119.38,0,-133.251	1/1:46:4,42:4:140:42:1503:-122.62,-0.902803,0	1/1:77:0,77:0:0:77:2759:-248.552,-23.1793,0	0/1:222:109,113:109:3875:113:3997:-293.091,0,-282.118	0/1:178:77,101:77:2743:101:3595:-270.173,0,-193.529	0/1:31:14,17:14:492:17:607:-45.6296,0,-35.2804	0/1:127:59,68:59:2120:68:2432:-180.905,0,-152.838	0/1:101:61,40:61:2171:40:1413:-97.0613,0,-165.252	1/1:94:0,94:0:0:94:3350:-301.718,-28.2968,0	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:15:6,9:6:212:9:324:-24.9904,0,-14.9093	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:213:0,213:0:0:213:7598:-683.86,-64.1194,0	1/1:97:0,97:0:0:97:3418:-307.834,-29.1999,0	0/1:39:17,22:17:608:22:765:-57.4276,0,-43.3119	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/1:89:47,42:47:1676:42:1512:-109.583,0,-124.336	0/1:39:22,17:22:779:17:603:-42.8593,0,-58.6919	0/1:148:81,67:81:2904:67:2385:-170.355,0,-217.043	0/1:43:15,28:15:536:28:1001:-77.4613,0,-35.6305	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	0/1:130:57,73:57:2023:73:2612:-196.194,0,-143.208	0/1:100:47,53:47:1679:53:1888:-140.095,0,-121.293	0/1:125:80,45:80:2868:45:1612:-107.741,0,-220.722	0/1:84:40,44:40:1436:44:1580:-117.099,0,-104.251	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:60:1,59:1:36:59:2097:-185.399,-14.4635,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:99:0,99:0:0:99:3526:-317.549,-29.802,0	0/1:49:27,22:27:968:22:784:-56.1334,0,-72.6869	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:161:64,97:64:2283:97:3409:-258.528,0,-157.266	0/1:33:22,11:22:780:11:392:-25.6861,0,-60.589	0/1:11:8,3:8:284:3:105:-6.48464,0,-22.592	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:36:23,13:23:828:13:468:-31.6226,0,-64.007	1/1:96:3,93:3:108:93:3321:-289.033,-18.8237,0	1/1:4:0,4:0:0:4:138:-12.7598,-1.20412,0	0/1:176:83,93:83:2955:93:3311:-245.228,0,-213.203	1/1:98:0,98:0:0:98:3503:-315.48,-29.5009,0	0/1:64:29,35:29:1036:35:1256:-94.0794,0,-74.288	1/1:41:0,41:0:0:41:1451:-130.885,-12.3422,0	0/1:90:45,45:45:1591:45:1608:-117.917,0,-116.387	0/1:69:42,27:42:1483:27:938:-63.9607,0,-112.993	1/1:27:0,27:0:0:27:959:-86.6228,-8.12781,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:26:9,17:9:320:17:608:-47.2252,0,-21.3156	1/1:164:1,163:1:36:163:5785:-517.17,-45.7706,0	1/1:104:0,103:0:0:103:3682:-331.222,-31.0061,0	1/1:122:0,122:0:0:122:4349:-391.585,-36.7257,0	1/1:156:0,156:0:0:156:5528:-497.644,-46.9607,0	0/1:64:45,19:45:1612:19:680:-42.2632,0,-126.104	0/1:75:40,35:40:1418:35:1260:-91.1282,0,-105.339	0/1:13:7,6:7:244:6:204:-14.7793,0,-18.386	1/1:103:0,103:0:0:103:3614:-325.466,-31.0061,0	1/1:67:0,67:0:0:67:2387:-215.087,-20.169,0	1/1:164:0,164:0:0:164:5856:-527.145,-49.3689,0	1/1:65:2,63:2:72:63:2235:-194.574,-12.7302,0	1/1:85:0,85:0:0:85:3055:-275.179,-25.5876,0	0/1:38:18,20:18:640:20:703:-52.1544,0,-46.4902	1/1:145:0,145:0:0:145:5137:-462.472,-43.6494,0	0/1:22:10,12:10:352:12:428:-32.2361,0,-25.3955	0/1:60:33,27:33:1157:27:956:-68.2856,0,-86.3687	1/1:79:0,79:0:0:79:2802:-252.42,-23.7814,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:66:29,37:29:1040:37:1324:-99.5941,0,-74.0464	0/1:73:40,33:40:1406:33:1180:-84.5329,0,-104.861	1/1:169:0,169:0:0:169:6003:-540.381,-50.8741,0	1/1:97:0,97:0:0:97:3457:-311.342,-29.1999,0
chr04	14925457	.	C	T	46633.5	PASS	AB=0.496197;ABP=3.72055;AC=47;AF=0.25;AN=188;AO=2825;CIGAR=1X;DP=12131;DPB=12131;DPRA=1.06729;EPP=6137.42;EPPR=20208.6;GTI=3;LEN=1;MEANALT=1.01852;MQM=53.8527;MQMR=28.6798;NS=94;NUMALT=1;ODDS=0.498711;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100702;QR=330246;RO=9305;RPL=0;RPP=6137.42;RPPR=20199.9;RPR=2825;RUN=1;SAF=0;SAP=6137.42;SAR=2825;SRF=1;SRP=20199.9;SRR=9304;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:50,19:50:1761:19:676:-39.6502,0,-92.8828	0/0:190:190,0:190:6781:0:0:0,-57.1957,-437.648	0/0:159:158,1:158:5593:1:36:0,-44.2745,-358.624	0/0:274:274,0:274:9707:0:0:0,-82.4822,-703.797	0/0:84:82,2:82:2932:2:72:0,-18.5912,-193.552	0/0:76:76,0:76:2689:0:0:0,-22.8783,-173.774	0/1:73:41,32:41:1460:32:1131:-78.8032,0,-81.8125	0/1:221:105,116:105:3726:116:4143:-303.712,0,-173.671	0/1:124:70,54:70:2477:54:1924:-134.496,0,-123.027	0/0:163:162,1:162:5730:1:36:0,-45.4722,-414.893	0/0:75:75,0:75:2638:0:0:0,-22.5772,-191.437	0/0:87:87,0:87:3046:0:0:0,-26.1896,-197.052	0/0:79:79,0:79:2803:0:0:0,-23.7814,-179.364	0/0:139:139,0:139:4909:0:0:0,-41.8432,-339.723	0/0:67:67,0:67:2361:0:0:0,-20.169,-172.89	0/1:70:32,38:32:1131:38:1364:-101.761,0,-57.3612	0/0:89:89,0:89:3139:0:0:0,-26.7917,-203.641	0/1:77:37,40:37:1320:40:1424:-104.022,0,-61.6242	0/1:32:15,17:15:523:17:612:-45.6494,0,-24.8719	0/1:180:92,88:92:3267:88:3116:-224.858,0,-182.252	0/1:140:86,54:86:3063:54:1928:-131.147,0,-168.89	0/1:160:58,102:58:2053:102:3621:-277.211,0,-106.967	0/1:203:106,97:106:3774:97:3465:-248.938,0,-214.23	0/0:182:174,8:174:6183:8:284:0,-28.9186,-398.56	0/0:118:118,0:118:4204:0:0:0,-35.5215,-288.322	0/1:355:203,152:203:7233:152:5433:-379.337,0,-437.372	0/1:205:93,112:93:3299:112:4012:-297.958,0,-164.726	0/1:51:25,26:25:887:26:915:-67.0533,0,-44.8413	0/1:245:139,106:139:4932:106:3782:-266.14,0,-299.861	0/1:289:144,145:144:5073:145:5168:-376.143,0,-263.912	0/0:243:243,0:243:8668:0:0:0,-73.1503,-628.766	0/1:4:1,3:1:36:3:108:-8.85676,0,-1.07475	0/1:9:7,2:7:248:2:61:-3.0044,0,-14.7279	0/0:7:7,0:7:248:0:0:0,-2.10721,-16.1554	0/0:5:5,0:5:180:0:0:0,-1.50515,-11.77	0/0:10:10,0:10:360:0:0:0,-3.0103,-23.2842	0/0:238:238,0:238:8468:0:0:0,-71.6451,-638.811	0/0:411:411,0:411:14616:0:0:0,-123.723,-1004.93	0/1:74:28,46:28:1004:46:1643:-124.789,0,-42.4086	0/1:3:2,1:2:72:1:36:-2.5514,0,-4.29569	0/1:199:107,91:107:3840:91:3218:-227.761,0,-203.185	0/1:45:26,19:26:919:19:670:-46.5889,0,-49.8871	0/1:154:74,80:74:2638:80:2848:-209.221,0,-135.874	0/1:108:56,52:56:2004:52:1860:-134.947,0,-114.399	0/0:80:80,0:80:2863:0:0:0,-24.0824,-206.738	0/1:158:63,95:63:2239:95:3387:-256.679,0,-122.598	0/1:169:83,86:83:2908:86:3068:-223.326,0,-137.618	0/1:201:131,70:131:4677:70:2508:-164.754,0,-278.033	0/1:96:42,54:42:1490:54:1910:-142.879,0,-79.8773	0/0:198:198,0:198:7067:0:0:0,-59.6039,-512.411	0/0:255:255,0:255:9042:0:0:0,-76.7626,-683.475	0/0:18:18,0:18:648:0:0:0,-5.41854,-46.5126	0/0:179:179,0:179:6361:0:0:0,-53.8844,-408.928	0/1:122:74,48:74:2651:48:1695:-116.01,0,-162.844	0/0:23:23,0:23:824:0:0:0,-6.92369,-52.831	0/1:140:50,90:50:1780:90:3193:-244.35,0,-81.2184	0/1:88:48,40:48:1720:40:1427:-102.042,0,-97.4773	0/1:11:9,2:9:324:2:72:-3.52348,0,-21.7359	0/1:8:4,4:4:144:4:144:-10.9002,0,-8.89355	0/1:98:48,50:48:1695:50:1783:-130.459,0,-87.1763	0/0:140:140,0:140:4959:0:0:0,-42.1442,-361.29	0/0:4:4,0:4:140:0:0:0,-1.20412,-10.6338	0/1:264:141,123:141:5018:123:4396:-315.599,0,-292.636	0/0:381:375,6:375:13352:6:216:0,-94.9185,-948.729	0/1:120:47,73:47:1654:73:2616:-199.071,0,-78.1578	0/0:87:87,0:87:3070:0:0:0,-26.1896,-219.922	0/1:260:145,115:145:5188:115:4112:-291.103,0,-295.205	0/1:145:45,100:45:1601:100:3573:-277.539,0,-72.7332	0/0:37:37,0:37:1296:0:0:0,-11.1381,-89.3113	0/0:152:152,0:152:5377:0:0:0,-45.7566,-349.486	0/0:125:124,1:124:4391:1:36:0,-35.6394,-330.754	0/1:34:15,19:15:540:19:684:-51.522,0,-28.9405	0/0:63:63,0:63:2229:0:0:0,-18.9649,-143.857	0/0:94:94,0:94:3320:0:0:0,-28.2968,-214.938	0/0:414:413,1:413:14658:1:36:0,-121.033,-1003.98	0/0:199:199,0:199:7080:0:0:0,-59.905,-512.031	0/1:130:64,66:64:2260:66:2358:-169.915,0,-107.803	0/1:80:40,40:40:1412:40:1432:-104.756,0,-67.1899	0/1:26:13,13:13:464:13:468:-34.5261,0,-22.3153	0/0:127:127,0:127:4507:0:0:0,-38.2308,-310.785	0/0:133:133,0:133:4729:0:0:0,-40.037,-304.447	0/0:199:199,0:199:7097:0:0:0,-59.905,-513.518	0/0:114:114,0:114:4083:0:0:0,-34.3174,-296.702	0/0:120:120,0:120:4213:0:0:0,-36.1236,-308.662	0/1:111:57,54:57:1998:54:1906:-138.012,0,-112.92	0/0:195:195,0:195:6926:0:0:0,-58.7008,-504.437	0/1:44:21,23:21:752:23:828:-61.2283,0,-35.3196	0/1:82:37,45:37:1277:45:1616:-120.25,0,-59.1037	0/0:95:95,0:95:3338:0:0:0,-28.5978,-217.692	0/0:75:75,0:75:2662:0:0:0,-22.5772,-183.987	0/1:112:56,56:56:1959:56:1987:-145.114,0,-103.022	0/1:64:17,47:17:600:47:1665:-130.249,0,-24.9731	0/0:152:152,0:152:5343:0:0:0,-45.7566,-388.984	0/0:123:123,0:123:4325:0:0:0,-37.0267,-315.45
chr04	14925463	.	TGAGC	CGAGG,TGAGG	196589	PASS	AB=0.50947,0.485143;ABP=7.49323,14.0435;AC=141,47;AF=0.75,0.25;AN=188;AO=9530,2814;CIGAR=1X3M1X,4M1X;DP=12388;DPB=12388.2;DPRA=0,1.13208;EPP=20697.1,6113.53;EPPR=5.18177;GTI=3;LEN=5,1;MEANALT=1.97872,2.54545;MQM=28.6589,53.9353;MQMR=60;NS=94;NUMALT=2;ODDS=2.12466;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=334512,100006;QR=36;RO=1;RPL=0,0;RPP=20697.1,6113.53;RPPR=5.18177;RPR=9530,2814;RUN=1,1;SAF=0,0;SAP=20697.1,6113.53;SAR=9530,2814;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:71:0,51,20:0:0:51,20:1736,712:-156.768,-57.6591,-42.3066,-99.4314,0,-93.4108	1/1:193:0,193,0:0:0:193,0:6787,0:-442.781,-58.0988,0,-442.781,-58.0988,-442.781	1/1:164:0,163,1:0:0:163,1:5727,36:-372.611,-49.0679,0,-369.681,-45.7797,-369.38	1/1:283:0,281,0:0:0:281,0:9813,0:-717.311,-84.5894,0,-717.311,-84.5894,-717.311	1/1:84:0,82,2:0:0:82,2:2909,72:-199.605,-24.6845,0,-193.863,-18.5912,-193.261	1/1:77:0,77,0:0:0:77,0:2718,0:-176.274,-23.1793,0,-176.274,-23.1793,-176.274	1/2:78:0,43,35:0:0:43,35:1501,1242:-195.3,-100.475,-87.5304,-95.1445,0,-84.6084	1/2:229:0,113,113:0:0:113,113:3963,4002:-547.983,-324.231,-290.214,-223.781,0,-189.764	1/2:129:0,75,54:0:0:75,54:2621,1897:-302.077,-153.811,-131.233,-148.575,0,-132.32	1/1:164:0,163,1:0:0:163,1:5773,36:-422.085,-49.0679,0,-419.15,-45.7732,-418.849	1/1:77:0,77,0:0:0:77,0:2694,0:-196.356,-23.1793,0,-196.356,-23.1793,-196.356	1/1:89:0,89,0:0:0:89,0:3055,0:-200.633,-26.7917,0,-200.633,-26.7917,-200.633	1/1:81:0,81,0:0:0:81,0:2868,0:-183.766,-24.3834,0,-183.766,-24.3834,-183.766	1/1:143:0,143,0:0:0:143,0:5031,0:-349.341,-43.0473,0,-349.341,-43.0473,-349.341	1/1:68:0,68,0:0:0:68,0:2381,0:-175.033,-20.47,0,-175.033,-20.47,-175.033	1/2:70:0,32,38:0:0:32,38:1143,1352:-179.153,-110.322,-100.689,-69.1412,0,-57.702	1/1:91:0,91,0:0:0:91,0:3209,0:-208.32,-27.3937,0,-208.32,-27.3937,-208.32	1/2:77:0,35,37:0:0:35,37:1238,1309:-175.298,-105.999,-95.463,-69.2952,0,-58.1571	1/2:32:0,15,17:0:0:15,17:531,608:-79.693,-49.8083,-45.2928,-30.1875,0,-25.07	1/2:182:0,93,88:0:0:93,88:3262,3101:-461.388,-251.712,-223.716,-209.635,0,-183.145	1/2:143:0,88,55:0:0:88,55:3089,1972:-348.374,-160.661,-134.17,-188.037,0,-171.48	1/2:162:0,59,103:0:0:59,103:2073,3697:-440.616,-301.087,-283.326,-139.848,0,-108.842	1/2:208:0,107,98:0:0:107,98:3753,3479:-525.509,-281.657,-249.447,-243.881,0,-214.38	1/1:185:0,177,8:0:0:177,8:6223,288:-430.341,-53.2823,0,-406.874,-29.4604,-404.466	1/1:123:0,122,0:0:0:122,0:4273,0:-296.57,-36.7257,0,-296.57,-36.7257,-296.57	1/2:359:0,209,146:0:0:209,146:7353,5231:-916.522,-425.262,-362.347,-491.291,0,-447.341	1/2:207:0,95,112:0:0:95,112:3363,4003:-528.175,-325.242,-296.644,-203.243,0,-169.527	1/2:51:0,25,25:0:0:25,25:874,892:-124.902,-72.7204,-65.1947,-52.2689,0,-44.7431	1/2:252:0,145,107:0:0:145,107:5068,3795:-652.476,-308.93,-265.281,-343.876,0,-311.666	1/2:292:0,148,143:0:0:148,143:5196,5105:-730.568,-414.895,-370.343,-315.641,0,-272.594	1/1:248:0,247,1:0:0:247,1:8727,36:-637.087,-74.3544,0,-634.279,-71.2009,-633.978	1/2:5:0,1,4:0:0:1,4:36,140:-13.4464,-11.7208,-11.4197,-1.97784,0,-0.773715	1/2:9:0,7,2:0:0:7,2:251,72:-20.7847,-5.71326,-3.60605,-15.3907,0,-14.7886	1/1:7:0,7,0:0:0:7,0:244,0:-16.098,-2.10721,0,-16.098,-2.10721,-16.098	1/1:5:0,5,0:0:0:5,0:180,0:-11.77,-1.50515,0,-11.77,-1.50515,-11.77	1/1:10:0,10,0:0:0:10,0:359,0:-23.2751,-3.0103,0,-23.2751,-3.0103,-23.2751	1/1:245:1,243,0:1:36:243,0:8520,0:-643.196,-70.1409,0,-643.497,-73.1503,-646.435	1/1:422:0,419,0:0:0:419,0:14701,0:-1021.33,-126.132,0,-1021.33,-126.132,-1021.33	1/2:75:0,29,46:0:0:29,46:1010,1637:-190.25,-132.773,-124.043,-57.7696,0,-43.9222	1/2:3:0,2,1:0:0:2,1:72,36:-7.42868,-3.15346,-2.5514,-4.59672,0,-4.29569	1/2:199:0,110,88:0:0:110,88:3845,3098:-484.37,-249.172,-216.059,-235.216,0,-208.725	1/2:45:0,26,19:0:0:26,19:913,649:-107.918,-52.6927,-44.8659,-55.5358,0,-49.8162	1/2:158:0,77,78:0:0:77,78:2695,2757:-388.578,-223.933,-200.753,-164.626,0,-141.146	1/2:111:0,60,50:0:0:60,50:2110,1792:-283.685,-146.06,-127.998,-137.635,0,-122.584	1/1:87:0,87,0:0:0:87,0:3059,0:-223.09,-26.1896,0,-223.09,-26.1896,-223.09	1/2:163:0,66,96:0:0:66,96:2329,3439:-437.367,-279.895,-260.027,-157.489,0,-128.59	1/2:171:0,84,87:0:0:84,87:2945,3066:-413.893,-248.055,-222.769,-166.138,0,-139.949	1/2:209:0,141,67:0:0:141,67:4939,2352:-510.149,-191.191,-148.746,-319.034,0,-298.865	1/2:97:0,42,55:0:0:42,55:1489,1968:-256.163,-160.159,-147.515,-96.3218,0,-79.7651	1/1:201:0,201,0:0:0:201,0:7102,0:-518.27,-60.507,0,-518.27,-60.507,-518.27	1/1:259:0,258,0:0:0:258,0:9119,0:-691.296,-77.6657,0,-691.296,-77.6657,-691.296	1/1:19:0,19,0:0:0:19,0:663,0:-48.2339,-5.71957,0,-48.2339,-5.71957,-48.2339	1/1:181:0,181,0:0:0:181,0:6352,0:-412.664,-54.4864,0,-412.664,-54.4864,-412.664	1/2:122:0,75,46:0:0:75,46:2631,1631:-311.752,-132.988,-110.41,-178.898,0,-165.05	1/1:25:0,25,0:0:0:25,0:858,0:-56.3506,-7.52575,0,-56.3506,-7.52575,-56.3506	1/2:142:0,50,92:0:0:50,92:1740,3269:-371.774,-265.437,-250.385,-106.637,0,-78.94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chr04	14939107	.	C	A	304607	PASS	AB=0.467365;ABP=74.5858;AC=140;AF=0.752688;AN=186;AO=10988;CIGAR=1X;DP=15149;DPB=15149;DPRA=0;EPP=3042.85;EPPR=1116.75;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9775;MQMR=59.9795;NS=93;NUMALT=1;ODDS=2.12313;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=391610;QR=147716;RO=4156;RPL=10020;RPP=16195.9;RPPR=5082.63;RPR=968;RUN=1;SAF=6487;SAP=782.471;SAR=4501;SRF=2289;SRP=96.0576;SRR=1867;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:54,31:54:1901:31:1116:-75.1641,0,-145.773	1/1:242:1,240:1:36:240:8578:-768.414,-69.3098,0	1/1:206:1,205:1:36:205:7368:-659.565,-58.4139,0	1/1:316:0,316:0:0:316:11220:-1009.69,-95.1255,0	1/1:73:3,70:3:108:70:2516:-216.616,-11.9,0	1/1:90:0,90:0:0:90:3215:-289.572,-27.0927,0	0/1:253:115,138:115:4071:138:4952:-369.668,0,-290.417	0/1:222:131,91:131:4672:91:3255:-226.328,0,-353.755	0/1:200:112,88:112:3988:88:3126:-221.358,0,-298.904	1/1:207:0,207:0:0:207:7376:-663.888,-62.3132,0	1/1:129:0,129:0:0:129:4599:-414.076,-38.8329,0	1/1:169:0,169:0:0:169:6045:-544.144,-50.8741,0	1/1:125:0,125:0:0:125:4476:-403.008,-37.6288,0	1/1:157:0,157:0:0:157:5619:-505.832,-47.2617,0	1/1:153:0,153:0:0:153:5450:-490.631,-46.0576,0	0/1:153:85,68:85:3024:68:2413:-171.368,0,-226.332	1/1:125:0,125:0:0:125:4384:-394.736,-37.6288,0	0/1:106:57,49:57:2022:49:1725:-123.621,0,-150.342	0/1:94:47,47:47:1688:47:1676:-122.83,0,-123.91	0/1:314:177,137:177:6308:137:4890:-345.726,0,-473.287	0/1:374:198,176:198:7030:176:6297:-454.237,0,-520.051	0/1:100:71,29:71:2508:29:1013:-61.3764,0,-195.868	0/1:174:100,73:100:3571:73:2597:-181.687,0,-269.307	1/1:178:15,163:15:528:163:5810:-475.161,-5.73198,0	1/1:89:1,88:1:36:88:3133:-278.597,-23.1934,0	0/1:365:187,178:187:6644:178:6346:-461.356,0,-488.11	0/1:464:225,239:225:8011:239:8496:-624.95,0,-581.336	0/1:84:44,40:44:1580:40:1420:-102.811,0,-117.205	0/1:360:177,183:177:6331:183:6492:-475.995,0,-461.511	0/1:165:73,92:73:2583:92:3281:-245.839,0,-183.047	1/1:227:0,227:0:0:227:8125:-731.264,-68.3338,0	0/1:13:4,9:4:144:9:320:-25.2207,0,-9.40023	0/1:30:19,11:19:676:11:396:-26.9518,0,-52.1371	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:352:0,352:0:0:352:12502:-1125.02,-105.963,0	1/1:135:3,132:3:108:132:4693:-412.453,-30.5639,0	0/1:110:62,48:62:2190:48:1698:-119.983,0,-164.249	.:.:.:.:.:.:.:.	0/1:267:142,125:142:5004:125:4464:-321.556,0,-370.132	0/1:70:30,40:30:1068:40:1413:-106.393,0,-75.36	0/1:214:112,102:112:3969:102:3606:-260.326,0,-292.982	0/1:142:70,72:70:2462:72:2568:-188.624,0,-179.086	1/1:120:0,120:0:0:120:4251:-382.769,-36.1236,0	0/1:150:83,67:83:2955:67:2363:-167.769,0,-221.029	0/1:185:96,89:96:3427:89:3184:-231.094,0,-252.953	0/1:248:138,110:138:4840:110:3918:-278.158,0,-361.102	0/1:140:76,64:76:2709:64:2287:-163.944,0,-201.908	1/1:238:1,237:1:36:237:8449:-756.815,-68.0469,0	1/1:149:0,149:0:0:149:5298:-476.955,-44.8535,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:167:0,167:0:0:167:5980:-538.306,-50.272,0	0/1:89:50,39:50:1760:39:1385:-98.1552,0,-131.889	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:228:101,127:101:3594:127:4560:-341.93,0,-255.032	0/1:91:46,45:46:1611:45:1600:-116.896,0,-117.882	0/1:10:8,2:8:288:2:68:-3.44741,0,-23.2571	0/1:25:17,8:17:612:8:280:-18.0136,0,-47.8877	0/1:185:90,95:90:3206:95:3384:-249.08,0,-233.072	1/1:225:2,223:2:72:223:7965:-710.034,-60.895,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:220:110,110:110:3916:110:3889:-283.977,0,-286.406	1/1:275:2,273:2:72:273:9717:-867.587,-75.9465,0	0/1:160:77,83:77:2746:83:2951:-217.657,0,-199.217	1/1:151:0,151:0:0:151:5365:-482.951,-45.4555,0	0/1:275:135,140:135:4784:140:4994:-366.806,0,-347.934	0/1:289:213,76:213:7622:76:2714:-157.507,0,-599.019	1/1:82:0,82:0:0:82:2929:-263.843,-24.6845,0	1/1:107:2,104:2:72:104:3715:-327.728,-25.4057,0	1/1:184:0,184:0:0:184:6503:-585.358,-55.3895,0	0/1:35:18,17:18:644:17:608:-44.516,0,-47.7545	1/1:115:0,115:0:0:115:4075:-366.935,-34.6185,0	1/1:128:0,128:0:0:128:4567:-411.196,-38.5318,0	1/1:353:0,353:0:0:353:12607:-1134.46,-106.264,0	1/1:228:0,228:0:0:228:8130:-731.717,-68.6348,0	0/1:144:76,68:76:2712:68:2417:-174.437,0,-200.976	0/1:202:86,116:86:3046:116:4137:-311.705,0,-213.563	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	1/1:190:2,187:2:68:187:6716:-598.024,-50.7901,0	1/1:134:0,134:0:0:134:4766:-429.094,-40.338,0	1/1:326:0,326:0:0:326:11660:-1049.26,-98.1358,0	1/1:149:0,149:0:0:149:5273:-474.707,-44.8535,0	1/1:173:0,173:0:0:173:6176:-555.937,-52.0782,0	0/1:169:94,75:94:3359:75:2648:-187.692,0,-251.652	1/1:257:0,256:0:0:256:9088:-817.539,-77.0637,0	0/1:58:36,22:36:1270:22:784:-53.4183,0,-97.1416	0/1:148:88,60:88:3116:60:2143:-148.585,0,-236.114	1/1:132:0,132:0:0:132:4724:-425.319,-39.736,0	1/1:86:0,86:0:0:86:3080:-277.428,-25.8886,0	0/1:154:70,84:70:2483:84:3012:-224.952,0,-177.362	0/1:162:111,51:111:3967:51:1808:-114.235,0,-308.454	1/1:154:2,152:2:72:152:5435:-482.44,-39.5219,0	1/1:243:1,242:1:36:242:8638:-773.5,-69.552,0
chr04	14971556	.	A	G	22976.3	PASS	AB=0.557588;ABP=72.2888;AC=47;AF=0.25;AN=188;AO=1347;CIGAR=1X;DP=4666;DPB=4666;DPRA=1.11217;EPP=2927.98;EPPR=7210.13;GTI=1;LEN=1;MEANALT=1;MQM=59.5531;MQMR=59.621;NS=94;NUMALT=1;ODDS=0.62788;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47954;QR=118414;RO=3319;RPL=0;RPP=2927.98;RPPR=7210.13;RPR=1347;RUN=1;SAF=0;SAP=2927.98;SAR=1347;SRF=0;SRP=7210.13;SRR=3319;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:18,24:18:640:24:860:-65.0318,0,-45.2474	0/0:41:39,2:39:1400:2:72:0,-5.55278,-118.507	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.667	0/0:122:122,0:122:4355:0:0:0,-36.7257,-391.488	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:43:18,25:18:648:25:883:-66.8408,0,-45.621	0/1:77:32,45:32:1144:45:1597:-120.689,0,-80.0856	0/1:39:12,27:12:417:27:949:-73.9224,0,-26.12	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9509	0/0:72:72,0:72:2551:0:0:0,-21.6742,-229.759	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.124	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.5264	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/1:46:20,26:20:707:26:928:-69.989,0,-50.1072	0/0:24:24,0:24:843:0:0:0,-7.22472,-76.1865	0/1:21:14,7:14:504:7:252:-16.7058,0,-39.3731	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:70:30,40:30:1063:40:1436:-108.461,0,-74.9064	0/1:53:19,34:19:684:34:1197:-92.0788,0,-45.8907	0/1:92:27,65:27:968:65:2328:-182.084,0,-59.738	0/1:36:20,16:20:716:16:572:-40.9763,0,-53.9306	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6634	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.355	0/1:158:70,88:70:2491:88:3121:-233.548,0,-176.81	0/1:122:47,75:47:1680:75:2692:-205.784,0,-114.757	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:158:73,85:73:2603:85:3044:-226.623,0,-186.947	0/1:116:64,52:64:2296:52:1868:-133.461,0,-171.977	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.083	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:6:4,2:4:135:2:63:-4.17697,0,-10.6763	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.5941	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.674	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.17	0/1:15:4,11:4:144:11:392:-31.0407,0,-8.79817	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69008	0/1:83:54,29:54:1914:29:1017:-66.8543,0,-147.543	0/1:22:14,8:14:495:8:288:-19.6447,0,-38.2557	0/1:75:26,49:26:936:49:1748:-134.996,0,-61.9822	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:79:33,46:33:1184:46:1652:-125.182,0,-83.0869	0/1:56:31,25:31:1101:25:896:-64.0879,0,-82.5315	0/1:120:58,62:58:2065:62:2197:-161.804,0,-149.991	0/1:58:19,39:19:684:39:1384:-107.364,0,-44.4306	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.632	0/0:79:79,0:79:2816:0:0:0,-23.7814,-253.674	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.464	0/1:41:26,15:26:932:15:515:-34.329,0,-71.8566	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:70:32,38:32:1137:38:1349:-100.636,0,-81.5603	0/1:36:7,29:7:237:29:1036:-82.7075,0,-10.8134	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:9:2,7:2:68:7:243:-19.4804,0,-3.74844	0/1:30:12,18:12:432:18:625:-47.5416,0,-30.1857	0/0:106:105,1:105:3734:1:36:0,-28.3109,-332.551	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:91:60,31:60:2132:31:1104:-72.2745,0,-164.722	0/0:58:57,1:57:2035:1:36:0,-13.8615,-179.808	0/1:34:16,18:16:561:18:644:-48.0271,0,-40.5775	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.245	0/1:88:46,42:46:1652:42:1504:-109.156,0,-122.468	0/1:85:19,66:19:676:66:2357:-186.787,0,-35.5804	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0938	0/0:40:40,0:40:1419:0:0:0,-12.0412,-128.005	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:111:111,0:111:3932:0:0:0,-33.4143,-353.713	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.441	0/0:144:144,0:144:5140:0:0:0,-43.3483,-461.447	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.206	0/1:71:31,40:31:1112:40:1399:-104.784,0,-79.0167	0/1:36:15,21:15:525:21:752:-57.1232,0,-36.7395	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:44:42,2:42:1504:2:72:0,-6.41344,-128.79	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.882	0/0:96:96,0:96:3420:0:0:0,-28.8989,-307.991	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.353	0/0:32:32,0:32:1130:0:0:0,-9.63296,-101.937	0/1:18:7,11:7:248:11:396:-30.5465,0,-17.2394	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.842	0/1:12:2,10:2:72:10:356:-28.7689,0,-3.22341	0/1:38:18,20:18:644:20:720:-53.6437,0,-46.8515	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.983	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8042	0/1:65:28,37:28:991:37:1316:-99.1656,0,-69.9301	0/1:34:11,23:11:388:23:802:-62.2621,0,-25.02	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.4	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.394
chr04	14971598	.	A	G	69242.7	PASS	AB=0.444164;ABP=67.2714;AC=141;AF=0.75;AN=188;AO=3321;CIGAR=1X;DP=4645;DPB=4645;DPRA=0;EPP=7214.47;EPPR=2875.87;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.5793;MQMR=59.6115;NS=94;NUMALT=1;ODDS=0.129416;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118942;QR=47208;RO=1323;RPL=3321;RPP=7214.47;RPPR=2875.87;RPR=0;RUN=1;SAF=0;SAP=7214.47;SAR=3321;SRF=0;SRP=2875.87;SRR=1323;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:23,18:23:809:18:648:-46.2213,0,-60.7393	1/1:44:1,43:1:36:43:1536:-134.168,-9.64705,0	1/1:71:0,71:0:0:71:2552:-229.837,-21.3731,0	1/1:124:0,124:0:0:124:4433:-398.498,-37.3277,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:20:0,20:0:0:20:703:-63.5935,-6.0206,0	0/1:41:23,18:23:816:18:644:-45.8618,0,-61.4171	0/1:74:42,32:42:1489:32:1148:-81.3481,0,-111.905	0/1:39:27,12:27:942:12:432:-27.481,0,-73.246	1/1:25:0,25:0:0:25:881:-79.5997,-7.52575,0	1/1:25:0,25:0:0:25:896:-80.9495,-7.52575,0	1/1:70:0,70:0:0:70:2516:-226.542,-21.0721,0	1/1:35:0,35:0:0:35:1256:-113.3,-10.5361,0	1/1:26:0,26:0:0:26:920:-82.9806,-7.82678,0	1/1:33:0,33:0:0:33:1186:-107.049,-9.93399,0	0/1:46:27,19:27:953:19:684:-48.0429,0,-72.2313	1/1:25:0,25:0:0:25:896:-80.9579,-7.52575,0	0/1:21:7,14:7:252:14:504:-39.3731,0,-16.7058	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/1:67:38,29:38:1364:29:1044:-74.1034,0,-102.889	0/1:54:35,19:35:1237:19:680:-45.2285,0,-95.3767	0/1:89:63,26:63:2249:26:936:-57.7632,0,-175.879	0/1:36:17,19:17:612:19:680:-50.6921,0,-44.5764	1/1:31:0,31:0:0:31:1112:-100.334,-9.33193,0	1/1:49:0,49:0:0:49:1752:-157.873,-14.7505,0	0/1:154:86,68:86:3080:68:2436:-173.066,0,-231.063	0/1:123:75,48:75:2677:48:1724:-118.414,0,-204.132	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:158:85,73:85:3040:73:2616:-188.111,0,-226.265	0/1:118:51,67:51:1805:67:2400:-180.721,0,-127.193	1/1:104:0,104:0:0:104:3712:-334.186,-31.3071,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7835,-1.80618,0	1/1:96:0,96:0:0:96:3440:-309.792,-28.8989,0	1/1:62:0,62:0:0:62:2224:-200.409,-18.6639,0	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.3768	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/1:83:28,55:28:981:55:1961:-151.769,0,-63.6155	0/1:22:8,14:8:284:14:496:-38.347,0,-19.2807	0/1:72:46,26:46:1637:26:936:-62.8853,0,-125.928	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:25:0,25:0:0:25:896:-80.9585,-7.52575,0	0/1:77:44,33:44:1576:33:1184:-83.689,0,-118.95	0/1:55:26,29:26:928:29:1036:-76.9881,0,-67.2669	0/1:118:60,58:60:2156:58:2065:-150.593,0,-158.151	0/1:55:36,19:36:1296:19:680:-44.9725,0,-100.383	1/1:54:0,54:0:0:54:1936:-174.51,-16.2556,0	1/1:79:0,79:0:0:79:2798:-252.055,-23.7814,0	1/1:9:0,9:0:0:9:320:-29.1377,-2.70927,0	1/1:79:0,79:0:0:79:2832:-254.993,-23.7814,0	0/1:39:14,25:14:504:25:896:-69.2202,0,-33.9015	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:71:39,32:39:1400:32:1144:-81.8918,0,-104.926	0/1:36:29,7:29:1032:7:240:-11.0932,0,-82.3471	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2393	0/1:29:17,12:17:608:12:432:-29.7036,0,-46.3222	1/1:106:1,105:1:36:105:3772:-335.976,-28.3109,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:89:30,59:30:1072:59:2116:-163.916,0,-69.9974	1/1:59:1,58:1:36:58:2076:-183.497,-14.1625,0	0/1:35:19,16:19:680:16:576:-41.6343,0,-50.9646	1/1:44:0,44:0:0:44:1584:-142.843,-13.2453,0	0/1:87:41,46:41:1472:46:1644:-122.05,0,-106.579	0/1:84:66,17:66:2352:17:608:-29.7073,0,-186.578	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:13:0,13:0:0:13:468:-42.4554,-3.91339,0	1/1:40:0,40:0:0:40:1440:-129.889,-12.0412,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:110:0,110:0:0:110:3940:-354.397,-33.1133,0	1/1:34:0,34:0:0:34:1208:-108.864,-10.235,0	1/1:144:0,144:0:0:144:5145:-461.897,-43.3483,0	1/1:69:0,69:0:0:69:2466:-222.188,-20.7711,0	0/1:71:41,30:41:1449:30:1080:-76.1386,0,-109.266	0/1:34:19,15:19:684:15:540:-38.6564,0,-51.6553	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:43:2,41:2:72:41:1464:-125.191,-6.11241,0	1/1:53:0,53:0:0:53:1904:-171.591,-15.9546,0	1/1:97:0,97:0:0:97:3472:-312.671,-29.1999,0	1/1:62:0,62:0:0:62:2232:-200.951,-18.6639,0	1/1:33:0,33:0:0:33:1188:-107.145,-9.93399,0	0/1:18:11,7:11:396:7:252:-17.6042,0,-30.5465	1/1:49:0,49:0:0:49:1764:-159.031,-14.7505,0	0/1:12:10,2:10:360:2:68:-2.84497,0,-29.1319	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9447	1/1:34:0,34:0:0:34:1220:-110.105,-10.235,0	1/1:16:0,16:0:0:16:576:-52.1657,-4.81648,0	0/1:64:36,28:36:1284:28:1008:-71.7612,0,-96.591	0/1:32:21,11:21:756:11:388:-25.622,0,-58.7343	1/1:75:0,75:0:0:75:2692:-242.52,-22.5773,0	1/1:51:0,51:0:0:51:1832:-165.096,-15.3525,0
chr04	14983182	.	C	T	108783	PASS	AB=0.479006;ABP=16.8693;AC=141;AF=0.75;AN=188;AO=5215;CIGAR=1X;DP=7108;DPB=7108;DPRA=0;EPP=11327.2;EPPR=4061.66;GTI=0;LEN=1;MEANALT=1;MQM=51.7452;MQMR=59.6323;NS=94;NUMALT=1;ODDS=2.77903;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186863;QR=67724;RO=1893;RPL=0;RPP=11327.2;RPPR=4061.66;RPR=5215;RUN=1;SAF=5215;SAP=11327.2;SAR=0;SRF=1893;SRP=4113.61;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:17,17:17:608:17:612:-45.0188,0,-44.8063	1/1:103:0,103:0:0:103:3700:-331.509,-31.0061,0	1/1:93:0,93:0:0:93:3325:-298.702,-27.9958,0	1/1:246:1,245:1:36:245:8738:-778.99,-70.4551,0	1/1:40:0,40:0:0:40:1432:-128.609,-12.0412,0	1/1:39:0,39:0:0:39:1400:-125.985,-11.7402,0	0/1:81:25,56:25:900:56:2004:-155.58,0,-56.9376	0/1:108:47,61:47:1680:61:2182:-163.244,0,-118.882	0/1:110:49,61:49:1764:61:2181:-162.713,0,-125.922	1/1:96:1,95:1:36:95:3393:-300.989,-25.3006,0	1/1:35:0,35:0:0:35:1260:-113.392,-10.5361,0	1/1:126:0,126:0:0:126:4497:-403.567,-37.9298,0	1/1:83:0,83:0:0:83:2980:-267.33,-24.9855,0	1/1:50:0,50:0:0:50:1796:-161.078,-15.0515,0	1/1:82:0,82:0:0:82:2944:-264.284,-24.6845,0	0/1:59:35,24:35:1256:24:860:-59.7697,0,-95.5763	1/1:27:0,27:0:0:27:964:-86.3854,-8.12781,0	0/1:43:22,21:22:792:21:756:-55.2511,0,-58.6614	0/1:20:14,6:14:504:6:216:-13.7202,0,-39.6693	0/1:119:64,55:64:2280:55:1971:-140.589,0,-169.618	0/1:125:81,44:81:2878:44:1572:-103.311,0,-221.601	0/1:57:44,13:44:1572:13:468:-25.1942,0,-124.605	0/1:122:59,63:59:2108:63:2249:-164.795,0,-153.23	1/1:36:1,35:1:36:35:1256:-109.344,-7.23881,0	1/1:90:0,90:0:0:90:3232:-290.185,-27.0927,0	0/1:173:108,65:108:3872:65:2336:-156.989,0,-296.588	0/1:285:150,135:150:5341:135:4840:-348.634,0,-394.992	0/1:28:11,17:11:396:17:612:-46.5973,0,-27.5539	0/1:188:93,95:93:3324:95:3400:-248.438,0,-242.683	0/1:80:47,33:47:1684:33:1180:-81.9545,0,-127.748	1/1:170:0,170:0:0:170:6084:-545.896,-51.1751,0	0/1:3:1,2:1:36:2:72:-5.91644,0,-2.69518	0/1:24:15,9:15:536:9:324:-22.2152,0,-41.3501	1/1:7:0,7:0:0:7:252:-22.9711,-2.10721,0	1/1:7:0,7:0:0:7:252:-22.9711,-2.10721,0	1/1:20:0,20:0:0:20:720:-64.7532,-6.0206,0	1/1:215:0,215:0:0:215:7721:-690.999,-64.7215,0	1/1:47:0,47:0:0:47:1692:-151.745,-14.1484,0	0/1:40:11,29:11:396:29:1036:-81.2994,0,-23.9251	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.87105	0/1:75:35,40:35:1251:40:1432:-106.269,0,-90.3089	0/1:37:19,18:19:671:18:648:-47.3663,0,-49.5527	0/1:101:56,45:56:1999:45:1597:-112.741,0,-149.757	0/1:83:45,38:45:1620:38:1368:-98.1332,0,-121.096	1/1:57:0,57:0:0:57:2036:-182.579,-17.1587,0	0/1:88:41,47:41:1464:47:1684:-123.519,0,-105.557	0/1:67:31,36:31:1108:36:1284:-94.9082,0,-79.8538	0/1:129:74,55:74:2660:55:1972:-138.24,0,-200.804	0/1:74:51,23:51:1813:23:824:-51.5842,0,-140.946	1/1:79:2,77:2:72:77:2752:-240.039,-16.9446,0	1/1:49:0,49:0:0:49:1760:-158.286,-14.7505,0	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	1/1:71:0,71:0:0:71:2556:-229.724,-21.3731,0	0/1:34:19,15:19:680:15:512:-36.0637,0,-51.2941	1/1:9:0,9:0:0:9:324:-29.4317,-2.70927,0	0/1:123:56,67:56:2008:67:2378:-176.733,0,-143.934	0/1:98:39,59:39:1396:59:2124:-161.238,0,-96.1943	0/1:5:4,1:4:144:1:36:-2.08408,0,-11.8085	0/1:16:9,7:9:324:7:252:-18.1546,0,-24.6811	0/1:82:41,41:41:1467:41:1472:-107.053,0,-107.625	1/1:111:0,111:0:0:111:3996:-358.493,-33.4143,0	1/1:5:0,5:0:0:5:176:-16.1567,-1.50515,0	0/1:116:52,64:52:1864:64:2300:-171.352,0,-132.657	1/1:72:0,72:0:0:72:2549:-228.87,-21.6742,0	0/1:60:21,39:21:752:39:1404:-108.304,0,-49.9363	1/1:39:0,39:0:0:39:1400:-125.735,-11.7402,0	0/1:102:57,45:57:2024:45:1616:-114.634,0,-151.712	0/1:95:65,30:65:2340:30:1070:-66.1607,0,-182.237	1/1:41:0,41:0:0:41:1476:-132.734,-12.3422,0	1/1:55:0,55:0:0:55:1957:-175.678,-16.5567,0	1/1:47:0,47:0:0:47:1679:-150.904,-14.1484,0	0/1:10:5,5:5:180:5:180:-13.5002,0,-13.5418	1/1:88:0,88:0:0:88:3164:-283.245,-26.4906,0	1/1:69:0,69:0:0:69:2465:-221.46,-20.7711,0	1/1:125:0,125:0:0:125:4465:-398.617,-37.6288,0	1/1:86:0,86:0:0:86:3088:-276.385,-25.8886,0	0/1:87:31,56:31:1116:56:2008:-153.281,0,-74.5457	0/1:69:46,23:46:1648:23:828:-53.4095,0,-127.837	0/1:12:3,9:3:108:9:324:-25.5978,0,-6.46281	1/1:77:0,77:0:0:77:2768:-248.743,-23.1793,0	1/1:101:1,100:1:36:100:3566:-316.543,-26.8058,0	1/1:127:0,127:0:0:127:4556:-408.347,-38.2308,0	1/1:57:0,57:0:0:57:2052:-184.248,-17.1587,0	1/1:75:1,74:1:36:74:2660:-235.237,-18.979,0	0/1:52:24,28:24:860:28:1008:-75.1621,0,-62.0683	1/1:130:0,130:0:0:130:4672:-419.03,-39.1339,0	0/1:23:12,11:12:432:11:396:-28.9686,0,-32.2975	0/1:91:46,45:46:1652:45:1620:-118.085,0,-121.575	1/1:73:0,73:0:0:73:2624:-235.279,-21.9752,0	1/1:34:0,34:0:0:34:1220:-109.842,-10.235,0	0/1:65:31,34:31:1108:34:1220:-90.2752,0,-80.4284	0/1:123:77,46:77:2748:46:1656:-111.29,0,-210.405	1/1:75:0,75:0:0:75:2692:-241.876,-22.5773,0	1/1:120:0,120:0:0:120:4308:-386.248,-36.1236,0
chr04	15020099	.	C	T	48363.5	PASS	AB=0.469484;ABP=52.9746;AC=47;AF=0.25;AN=188;AO=2911;CIGAR=1X;DP=12406;DPB=12406;DPRA=1.18192;EPP=6246.24;EPPR=20367.8;GTI=0;LEN=1;MEANALT=1.05455;MQM=59.9911;MQMR=59.9976;NS=94;NUMALT=1;ODDS=0.806637;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104016;QR=338766;RO=9490;RPL=2902;RPP=6246.24;RPPR=20376.4;RPR=9;RUN=1;SAF=0;SAP=6324.17;SAR=2911;SRF=1;SRP=20601.6;SRR=9489;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:13,22:13:468:22:792:-61.0696,0,-31.9236	0/0:175:175,0:175:6239:0:0:0,-52.6802,-561.608	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/0:472:471,1:471:16743:1:36:0,-138.488,-1502.93	0/0:81:80,1:80:2856:1:36:0,-20.7852,-253.68	0/0:106:106,0:106:3789:0:0:0,-31.9092,-341.207	0/1:275:145,130:145:5162:130:4586:-330.122,0,-381.937	0/1:139:87,52:87:3112:52:1864:-126.196,0,-238.464	0/1:93:59,34:59:2062:34:1209:-81.1183,0,-157.852	0/0:143:143,0:143:5086:0:0:0,-43.0473,-457.884	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:126:126,0:126:4500:0:0:0,-37.9298,-405.17	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/0:97:97,0:97:3460:0:0:0,-29.1999,-311.613	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/1:73:41,32:41:1472:32:1133:-80.3018,0,-110.801	0/0:105:105,0:105:3756:0:0:0,-31.6081,-338.24	0/1:72:34,38:34:1220:38:1360:-101.026,0,-88.4326	0/1:82:36,46:36:1288:46:1656:-124.644,0,-91.5391	0/1:319:179,139:179:6390:139:4953:-349.831,0,-479.103	0/1:229:125,104:125:4451:104:3716:-265.704,0,-331.824	0/1:157:69,87:69:2459:87:3082:-230.286,0,-174.244	0/1:96:59,37:59:2093:37:1332:-91.2835,0,-159.739	0/0:105:101,4:101:3603:4:144:0,-18.2945,-311.163	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/1:325:161,164:161:5748:164:5853:-429.047,0,-419.601	0/1:269:146,123:146:5212:123:4420:-316.993,0,-388.243	0/1:56:29,27:29:1040:27:968:-70.5797,0,-77.0567	0/1:601:299,302:299:10697:302:10757:-787.114,0,-781.717	0/1:95:28,67:28:989:67:2408:-188.378,0,-60.7242	0/0:210:209,0:209:7449:0:0:0,-62.9153,-670.095	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:279:279,0:279:9948:0:0:0,-83.9874,-895.218	0/0:150:149,1:149:5327:1:36:0,-41.5562,-475.966	0/1:119:75,44:75:2688:44:1572:-105.949,0,-206.342	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:225:147,78:147:5244:78:2800:-184.508,0,-404.365	0/1:80:39,40:39:1400:40:1434:-105.255,0,-102.197	0/1:176:114,62:114:4071:62:2194:-144.742,0,-313.596	0/1:161:90,71:90:3232:71:2552:-181.464,0,-242.635	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.065	0/1:140:63,77:63:2260:77:2768:-207.216,0,-161.518	0/1:75:33,42:33:1180:42:1502:-112.897,0,-83.9308	0/1:217:105,112:105:3735:112:3976:-292.706,0,-271.029	0/1:150:90,60:90:3208:60:2160:-149.498,0,-243.79	0/0:186:186,0:186:6655:0:0:0,-55.9916,-599.028	0/0:241:241,0:241:8595:0:0:0,-72.5482,-773.548	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:50:25,25:25:900:25:896:-65.9089,0,-66.2695	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:161:94,67:94:3316:67:2392:-167.071,0,-250.191	0/1:65:31,34:31:1104:34:1216:-90.1796,0,-80.1037	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:31:21,10:21:756:10:360:-23.4124,0,-59.0353	0/1:112:63,49:63:2264:49:1764:-125.328,0,-170.307	0/0:106:106,0:106:3780:0:0:0,-31.9092,-340.4	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:288:139,149:139:4957:149:5348:-394.755,0,-359.583	0/0:107:107,0:107:3807:0:0:0,-32.2102,-342.829	0/1:72:40,32:40:1436:32:1137:-80.9628,0,-107.864	0/0:194:194,0:194:6891:0:0:0,-58.3998,-620.262	0/1:174:110,64:110:3899:64:2274:-152.54,0,-298.723	0/1:68:29,39:29:1010:39:1392:-105.109,0,-70.7395	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/0:113:113,0:113:4036:0:0:0,-34.0164,-363.426	0/0:91:91,0:91:3255:0:0:0,-27.3937,-293.17	0/1:17:9,8:9:301:8:288:-21.1499,0,-22.2962	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/0:96:95,1:95:3399:1:36:0,-25.3006,-302.526	0/0:249:249,0:249:8902:0:0:0,-74.9565,-801.164	0/0:215:214,0:214:7652:0:0:0,-64.4204,-688.357	0/1:154:75,79:75:2696:79:2832:-208.76,0,-196.525	0/1:132:82,50:82:2940:50:1792:-121.827,0,-225.098	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:154:153,1:153:5465:1:36:0,-42.7603,-488.379	0/0:182:181,1:181:6412:1:36:0,-51.1892,-573.574	0/0:337:336,1:336:12006:1:36:0,-97.8488,-1076.79	0/0:134:134,0:134:4785:0:0:0,-40.338,-430.806	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/1:138:66,72:66:2368:72:2558:-188.924,0,-171.836	0/0:207:207,0:207:7419:0:0:0,-62.3132,-667.754	0/1:52:22,30:22:784:30:1080:-81.8597,0,-55.2304	0/1:103:60,43:60:2125:43:1544:-108.247,0,-160.511	0/0:91:91,0:91:3255:0:0:0,-27.3937,-293.17	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:119:65,54:65:2324:54:1944:-139.413,0,-173.598	0/1:115:44,71:44:1559:71:2536:-193.872,0,-105.982	0/0:182:182,0:182:6520:0:0:0,-54.7875,-586.883	0/0:174:174,0:174:6232:0:0:0,-52.3792,-560.975
chr04	15055045	.	A	T	22260.7	PASS	AB=0.492358;ABP=4.40421;AC=47;AF=0.25;AN=188;AO=1360;CIGAR=1X;DP=5736;DPB=5736;DPRA=1.01905;EPP=2956.21;EPPR=9498.86;GTI=3;LEN=1;MEANALT=1.04;MQM=59.3559;MQMR=59.737;NS=94;NUMALT=1;ODDS=0.835444;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48349;QR=156261;RO=4373;RPL=0;RPP=2956.21;RPPR=9498.86;RPR=1360;RUN=1;SAF=1360;SAP=2956.21;SAR=0;SRF=4373;SRP=9498.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.299	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.17	0/0:124:124,0:124:4444:0:0:0,-37.3277,-400.105	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.789	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:80:44,36:44:1561:36:1280:-91.4123,0,-116.695	0/1:60:32,28:32:1152:28:1004:-72.5977,0,-85.9268	0/1:41:19,22:19:680:22:777:-57.9,0,-49.1869	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.069	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.291	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.964	0/0:77:77,0:77:2734:0:0:0,-23.1793,-246.251	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.344	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:53:29,24:29:1029:24:856:-61.3707,0,-76.9481	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:53:21,32:21:756:32:1140:-86.9282,0,-52.4044	0/1:48:31,17:31:1086:17:597:-39.5534,0,-83.5956	0/1:106:44,62:44:1550:62:2207:-166.931,0,-107.873	0/1:90:45,45:45:1597:45:1608:-117.41,0,-116.912	0/1:70:21,49:21:752:49:1734:-135.269,0,-46.9332	0/1:31:10,21:10:360:21:733:-56.8892,0,-23.4124	0/0:92:90,2:90:3224:2:72:0,-20.9946,-283.653	0/0:21:20,1:20:720:1:35:0,-2.82706,-61.6342	0/1:167:95,72:95:3401:72:2561:-180.435,0,-256.023	0/1:162:84,78:84:3001:78:2750:-198.958,0,-221.535	0/1:34:13,20:13:468:20:720:-54.8303,0,-32.1658	0/1:169:91,78:91:3238:78:2788:-200.06,0,-240.754	0/1:73:51,22:51:1806:22:757:-46.4708,0,-140.783	0/0:68:68,0:68:2433:0:0:0,-20.47,-219.203	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:19:6,13:6:212:13:453:-35.3801,0,-13.7005	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:199:198,0:198:7073:0:0:0,-59.6039,-636.221	0/0:109:109,0:109:3886:0:0:0,-32.8123,-349.923	0/1:65:29,36:29:1044:36:1262:-94.1879,0,-74.5175	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:65:37,28:37:1294:28:1004:-71.0997,0,-97.1901	0/1:36:18,18:18:648:18:648:-47.8102,0,-47.8102	0/1:61:32,29:32:1152:29:1036:-75.1819,0,-85.6227	0/1:86:39,47:39:1404:47:1688:-126.214,0,-100.768	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.315	0/1:125:57,68:57:2022:68:2425:-180.846,0,-144.611	0/1:45:17,28:17:608:28:996:-76.4053,0,-41.5057	0/1:51:32,19:32:1144:19:680:-46.165,0,-87.9123	0/1:45:26,19:26:902:19:676:-47.5196,0,-67.9393	0/0:125:125,0:125:4439:0:0:0,-37.6287,-399.663	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.324	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.605	0/1:31:16,15:16:572:15:521:-37.8735,0,-42.4815	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:38:17,21:17:604:21:737:-54.1879,0,-43.2515	0/1:22:16,6:16:553:6:216:-13.1679,0,-43.4509	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	0/1:9:8,1:8:273:1:36:-0.889005,0,-22.1909	0/1:30:18,12:18:644:12:432:-30.1903,0,-49.2551	0/0:117:116,1:116:4164:1:36:0,-31.6537,-371.35	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:88:50,38:50:1785:38:1364:-96.5688,0,-134.44	0/0:68:68,0:68:2410:0:0:0,-20.47,-217.147	0/1:31:22,9:22:792:9:316:-18.0696,0,-62.2737	0/0:18:18,0:18:618:0:0:0,-5.41854,-55.9359	0/1:125:70,55:70:2512:55:1953:-138.382,0,-188.643	0/1:18:7,11:7:252:11:377:-28.8108,0,-17.6104	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1244	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.421	0/1:32:19,13:19:684:13:453:-31.4095,0,-52.255	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.297	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.22	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.92	0/0:98:97,1:97:3446:1:31:0,-26.4023,-307.248	0/1:36:16,20:16:572:20:705:-52.9275,0,-40.9681	0/1:63:32,30:32:1152:30:1076:-78.1396,0,-84.997	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.449	0/0:64:64,0:64:2274:0:0:0,-19.2659,-204.911	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.523	0/0:85:85,0:85:3041:0:0:0,-25.5875,-273.906	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.658	0/1:82:41,41:41:1472:41:1472:-107.859,0,-107.984	0/0:152:152,0:152:5448:0:0:0,-45.7566,-490.436	0/1:45:16,29:16:576:29:1032:-79.6428,0,-38.6286	0/1:94:41,53:41:1476:53:1896:-142.62,0,-104.831	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:44:44,0:44:1561:0:0:0,-13.2453,-139.83	0/1:80:38,42:38:1368:42:1504:-111.562,0,-99.2086	0/1:68:30,38:30:1080:38:1364:-102.584,0,-77.0432	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.986	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.961
chr04	15055049	.	G	A	92532.6	PASS	AB=0.503259;ABP=3.26503;AC=141;AF=0.75;AN=188;AO=4375;CIGAR=1X;DP=5753;DPB=5753;DPRA=30.9194;EPP=9503.2;EPPR=2995.3;GTI=2;LEN=1;MEANALT=1;MQM=59.733;MQMR=59.357;NS=94;NUMALT=1;ODDS=0.485973;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156559;QR=49222;RO=1378;RPL=0;RPP=9503.2;RPPR=2995.3;RPR=4375;RUN=1;SAF=4375;SAP=9503.2;SAR=0;SRF=1378;SRP=2995.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:61:0,61:0:0:61:2177:-196.186,-18.3628,0	1/1:71:0,71:0:0:71:2552:-229.889,-21.3731,0	1/1:125:0,125:0:0:125:4461:-401.634,-37.6288,0	1/1:17:0,17:0:0:17:612:-55.0229,-5.11751,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:84:40,44:40:1432:44:1553:-114.771,0,-103.869	0/1:61:29,32:29:1029:32:1152:-85.6258,0,-74.5417	0/1:40:22,18:22:777:18:633:-45.2539,0,-58.201	1/1:79:0,79:0:0:79:2830:-254.936,-23.7814,0	1/1:60:0,60:0:0:60:2160:-194.651,-18.0618,0	1/1:70:0,70:0:0:70:2520:-227.043,-21.0721,0	1/1:76:0,76:0:0:76:2726:-245.54,-22.8783,0	1/1:56:0,56:0:0:56:2016:-181.704,-16.8577,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	0/1:53:24,29:24:860:29:1044:-78.3018,0,-61.7314	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	0/1:52:31,21:31:1108:21:756:-52.7055,0,-84.3447	0/1:48:17,31:17:597:31:1116:-86.3023,0,-39.5534	0/1:105:61,44:61:2192:44:1575:-110.427,0,-165.88	0/1:94:48,46:48:1720:46:1633:-118.946,0,-126.275	0/1:71:50,21:50:1796:21:752:-46.6322,0,-140.548	0/1:31:21,10:21:756:10:360:-23.4124,0,-58.9499	1/1:92:2,90:2:72:90:3236:-284.731,-20.9946,0	1/1:21:0,21:0:0:21:732:-66.1958,-6.32163,0	0/1:168:74,94:74:2633:94:3384:-254.193,0,-186.627	0/1:158:76,82:76:2724:82:2944:-217.599,0,-197.822	0/1:34:22,12:22:792:12:432:-28.9862,0,-61.366	0/1:171:80,91:80:2868:91:3260:-242.134,0,-206.653	0/1:73:22,51:22:765:51:1795:-139.818,0,-47.1925	1/1:69:0,69:0:0:69:2480:-223.346,-20.7711,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:19:13,6:13:468:6:216:-14.0663,0,-36.7401	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:199:0,199:0:0:199:7144:-642.964,-59.905,0	1/1:110:0,110:0:0:110:3932:-354.065,-33.1133,0	0/1:65:37,28:37:1320:28:1008:-71.279,0,-99.4114	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:65:28,37:28:959:37:1308:-98.4518,0,-67.0471	0/1:37:19,18:19:680:18:633:-46.1523,0,-50.3864	0/1:61:28,33:28:1008:33:1180:-88.1406,0,-72.6643	0/1:87:49,38:49:1756:38:1364:-96.8688,0,-132.033	1/1:48:0,48:0:0:48:1713:-154.444,-14.4494,0	0/1:126:69,57:69:2476:57:2052:-147.012,0,-185.134	0/1:46:29,17:29:1040:17:612:-41.5661,0,-80.0588	0/1:51:19,32:19:672:32:1148:-88.2726,0,-45.4427	0/1:44:19,25:19:684:25:896:-67.7103,0,-48.543	1/1:125:0,125:0:0:125:4458:-401.369,-37.6288,0	1/1:72:0,72:0:0:72:2520:-227.042,-21.6742,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:43:0,43:0:0:43:1521:-137.173,-12.9443,0	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.5937	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:37:20,17:20:716:17:608:-43.9139,0,-52.6057	0/1:23:6,17:6:208:17:608:-48.1037,0,-12.1354	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:32:13,19:13:449:19:684:-52.2527,0,-31.1045	1/1:117:1,116:1:36:116:4157:-370.719,-31.6537,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:88:38,50:38:1360:50:1777:-133.72,0,-96.2092	1/1:67:0,67:0:0:67:2408:-216.969,-20.169,0	0/1:32:10,22:10:356:22:777:-60.6174,0,-21.5871	1/1:18:0,18:0:0:18:648:-58.6495,-5.41854,0	0/1:125:55,70:55:1957:70:2498:-187.4,0,-138.617	0/1:18:11,7:11:377:7:248:-17.2457,0,-28.8108	1/1:30:0,30:0:0:30:1080:-97.4848,-9.0309,0	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	1/1:62:0,62:0:0:62:2228:-200.781,-18.6639,0	0/1:32:13,19:13:468:19:680:-51.8939,0,-32.7696	1/1:62:0,62:0:0:62:2228:-200.759,-18.6639,0	1/1:33:0,33:0:0:33:1187:-107.132,-9.93399,0	1/1:95:0,95:0:0:95:3408:-306.92,-28.5979,0	1/1:100:1,99:1:36:99:3551:-316.194,-26.5047,0	0/1:37:21,16:21:748:16:576:-41.0287,0,-56.499	0/1:64:32,32:32:1152:32:1148:-84.3557,0,-84.6911	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:48:0,48:0:0:48:1705:-153.729,-14.4494,0	1/1:64:0,64:0:0:64:2262:-203.831,-19.2659,0	1/1:98:0,98:0:0:98:3516:-316.631,-29.5009,0	1/1:83:0,83:0:0:83:2961:-266.709,-24.9855,0	1/1:63:0,63:0:0:63:2264:-204.018,-18.9649,0	0/1:81:41,40:41:1472:40:1426:-104.19,0,-108.388	1/1:156:0,156:0:0:156:5585:-502.759,-46.9607,0	0/1:45:29,16:29:1040:16:576:-38.6286,0,-80.3574	0/1:94:52,42:52:1859:42:1497:-106.718,0,-139.292	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	1/1:44:0,44:0:0:44:1573:-141.418,-13.2453,0	0/1:79:40,39:40:1440:39:1396:-102.028,0,-106.107	0/1:70:40,30:40:1428:30:1076:-76.0808,0,-107.71	1/1:56:0,56:0:0:56:1997:-179.995,-16.8577,0	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0
chr04	15055073	.	G	A	91348.7	PASS	AB=0.50722;ABP=4.23311;AC=141;AF=0.75;AN=188;AO=4310;CIGAR=1X;DP=5650;DPB=5650;DPRA=30.3656;EPP=9327.35;EPPR=2899.76;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.7341;MQMR=59.4492;NS=94;NUMALT=1;ODDS=0.0130411;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154185;QR=47653;RO=1338;RPL=4306;RPP=9327.35;RPPR=2899.76;RPR=4;RUN=1;SAF=4310;SAP=9362.06;SAR=0;SRF=1338;SRP=2908.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	1/1:60:1,59:1:36:59:2100:-185.663,-14.4635,0	1/1:71:0,71:0:0:71:2542:-228.991,-21.3731,0	1/1:122:0,122:0:0:122:4376:-393.987,-36.7257,0	1/1:17:0,17:0:0:17:608:-54.6643,-5.11751,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:83:38,45:38:1343:45:1616:-120.742,0,-96.1802	0/1:59:27,32:27:972:32:1148:-85.8675,0,-70.0208	0/1:41:22,19:22:776:19:684:-49.5481,0,-57.8166	1/1:77:0,77:0:0:77:2764:-248.994,-23.1793,0	1/1:59:1,58:1:36:58:2079:-183.765,-14.1625,0	1/1:67:0,67:0:0:67:2392:-215.529,-20.169,0	1/1:75:0,75:0:0:75:2692:-242.48,-22.5773,0	1/1:56:0,56:0:0:56:2008:-180.984,-16.8577,0	1/1:62:1,61:1:36:61:2192:-193.947,-15.0656,0	0/1:52:23,29:23:809:29:1014:-75.8999,0,-57.4389	1/1:65:0,65:0:0:65:2316:-208.701,-19.567,0	0/1:54:33,21:33:1162:21:756:-52.1034,0,-88.6019	0/1:45:15,29:15:532:29:1036:-79.9497,0,-34.6091	0/1:103:59,44:59:2116:44:1569:-110.486,0,-159.646	0/1:94:48,46:48:1685:46:1648:-120.298,0,-123.621	0/1:69:48,21:48:1712:21:740:-46.1514,0,-133.595	0/1:31:21,10:21:752:10:356:-23.0493,0,-58.6058	1/1:90:2,88:2:68:88:3147:-277.027,-20.695,0	1/1:20:0,20:0:0:20:716:-64.7631,-6.0206,0	0/1:164:69,95:69:2476:95:3379:-254.949,0,-173.721	0/1:157:75,82:75:2664:82:2936:-217.181,0,-192.724	0/1:34:22,12:22:775:12:432:-28.9862,0,-59.8315	0/1:167:79,88:79:2815:88:3139:-232.457,0,-203.118	0/1:68:21,47:21:756:47:1672:-130.208,0,-47.8972	1/1:68:0,68:0:0:68:2428:-218.681,-20.47,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:19:13,6:13:468:6:216:-14.0663,0,-36.7401	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:197:1,196:1:36:196:7022:-628.379,-55.7046,0	1/1:108:0,108:0:0:108:3869:-348.394,-32.5112,0	0/1:64:36,28:36:1278:28:996:-70.4986,0,-95.9498	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:62:25,37:25:887:37:1313:-99.8058,0,-61.4837	0/1:34:18,16:18:640:16:576:-41.9353,0,-47.6943	0/1:55:24,31:24:856:31:1112:-83.8301,0,-60.7952	0/1:84:48,36:48:1697:36:1288:-90.9347,0,-127.657	1/1:48:0,48:0:0:48:1728:-155.796,-14.4494,0	0/1:123:67,56:67:2408:56:2012:-144.317,0,-179.92	0/1:45:28,17:28:1000:17:593:-40.1484,0,-76.769	0/1:49:19,30:19:684:30:1077:-82.489,0,-47.1114	0/1:45:19,26:19:680:26:932:-70.6478,0,-47.8808	1/1:124:0,124:0:0:124:4421:-398.045,-37.3277,0	1/1:71:0,71:0:0:71:2555:-230.195,-21.3731,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:42:0,42:0:0:42:1504:-135.646,-12.6433,0	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.5937	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:37:20,17:20:703:17:608:-43.9139,0,-51.4315	0/1:22:6,16:6:212:16:566:-44.627,0,-12.8021	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:31:12,19:12:432:19:673:-51.5637,0,-29.8893	1/1:114:1,113:1:36:113:4019:-358.308,-30.7506,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:84:37,47:37:1320:47:1680:-126.201,0,-93.8141	1/1:67:0,67:0:0:67:2404:-216.609,-20.169,0	0/1:31:9,22:9:320:22:788:-61.9129,0,-18.4331	1/1:18:0,18:0:0:18:644:-58.2882,-5.41854,0	0/1:123:52,71:52:1864:71:2556:-193.203,0,-130.847	0/1:17:10,7:10:347:7:252:-17.9114,0,-26.4175	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:43:0,43:0:0:43:1532:-138.173,-12.9443,0	1/1:61:0,61:0:0:61:2175:-196.015,-18.3628,0	0/1:33:14,19:14:486:19:680:-51.5928,0,-34.0769	1/1:62:0,62:0:0:62:2224:-200.405,-18.6639,0	1/1:33:0,33:0:0:33:1188:-107.22,-9.93399,0	1/1:92:0,92:0:0:92:3296:-296.845,-27.6948,0	1/1:98:0,98:0:0:98:3524:-317.361,-29.5009,0	0/1:37:21,16:21:744:16:576:-41.0287,0,-56.138	0/1:64:31,32:31:1108:32:1133:-82.9448,0,-80.6872	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:47:0,47:0:0:47:1692:-152.562,-14.1484,0	1/1:64:0,64:0:0:64:2281:-205.541,-19.2659,0	1/1:96:0,96:0:0:96:3409:-307.009,-28.8989,0	1/1:84:0,84:0:0:84:3004:-270.577,-25.2865,0	1/1:63:0,63:0:0:63:2268:-204.377,-18.9649,0	0/1:81:40,41:40:1432:41:1457:-106.946,0,-104.79	1/1:152:0,152:0:0:152:5443:-489.984,-45.7566,0	0/1:45:29,16:29:1040:16:576:-38.6286,0,-80.3637	0/1:90:49,41:49:1734:41:1476:-106.035,0,-129.25	1/1:83:0,83:0:0:83:2965:-267.082,-24.9855,0	1/1:44:0,44:0:0:44:1573:-141.418,-13.2453,0	0/1:80:41,39:41:1464:39:1389:-101.095,0,-107.963	0/1:65:37,28:37:1324:28:1004:-71.1089,0,-99.866	1/1:54:0,54:0:0:54:1935:-174.42,-16.2556,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0
chr04	15060523	.	C	T	69792.9	PASS	AB=0.521881;ABP=27.1479;AC=46;AF=0.247312;AN=186;AO=3045;CIGAR=1X;DP=11662;DPB=11662;DPRA=1.1293;EPP=6554.48;EPPR=18558.5;GTI=0;LEN=1;MEANALT=1.09259;MQM=59.9094;MQMR=59.9811;NS=93;NUMALT=1;ODDS=1.24635;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108257;QR=303551;RO=8609;RPL=1390;RPP=53.0897;RPPR=370.475;RPR=1655;RUN=1;SAF=1391;SAP=52.3366;SAR=1654;SRF=3699;SRP=372.915;SRR=4910;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:32,21:32:1125:21:752:-52.0517,0,-85.6012	0/0:152:152,0:152:5391:0:0:0,-45.7566,-485.321	0/0:182:182,0:182:6432:0:0:0,-54.7875,-578.967	0/0:241:239,1:239:8410:1:36:0,-69.0087,-753.31	0/0:52:50,2:50:1796:2:72:0,-8.81684,-155.086	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.47	0/1:150:66,84:66:2324:84:2961:-221.567,0,-164.264	0/1:219:95,124:95:3376:124:4442:-333.978,0,-238.13	0/1:129:59,70:59:2116:70:2490:-185.518,0,-151.876	0/0:167:167,0:167:5875:0:0:0,-50.272,-528.49	0/0:63:63,0:63:2186:0:0:0,-18.9649,-197.004	0/0:157:157,0:157:5457:0:0:0,-47.2617,-491.248	0/0:175:175,0:175:6127:0:0:0,-52.6802,-551.537	0/0:126:126,0:126:4449:0:0:0,-37.9298,-400.583	0/0:141:141,0:141:5008:0:0:0,-42.4452,-450.869	0/1:128:54,74:54:1917:74:2619:-197.426,0,-134.273	0/0:110:109,0:109:3891:0:0:0,-32.8123,-350.025	0/1:87:37,50:37:1324:50:1796:-135.733,0,-93.2725	0/1:48:26,22:26:900:22:792:-57.1562,0,-66.8619	0/1:235:123,112:123:4324:112:3985:-288.096,0,-318.594	0/1:253:136,117:136:4741:117:4164:-298.782,0,-350.69	0/1:58:19,39:19:663:39:1395:-108.389,0,-42.5337	0/1:100:51,49:51:1832:49:1731:-125.956,0,-135.058	0/0:105:101,4:101:3595:4:144:0,-18.2945,-310.441	0/0:89:89,0:89:3146:0:0:0,-26.7917,-283.364	0/1:375:176,199:176:6205:199:7083:-524.642,0,-445.663	0/1:350:177,173:177:6244:173:6133:-446.649,0,-456.699	0/1:76:35,41:35:1260:41:1456:-108.456,0,-90.8272	0/1:297:161,136:161:5665:136:4837:-346.067,0,-420.462	0/1:158:87,71:87:3097:71:2494:-177.017,0,-231.394	0/0:132:131,0:131:4624:0:0:0,-39.4349,-416.142	0/1:9:6,3:6:216:3:104:-6.97437,0,-17.0812	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:307:307,0:307:10809:0:0:0,-92.4162,-972.729	0/0:100:100,0:100:3547:0:0:0,-30.103,-319.438	0/1:66:39,27:39:1370:27:963:-67.118,0,-103.727	.:.:.:.:.:.:.:.	0/1:153:68,85:68:2398:85:3001:-224.263,0,-170.017	0/1:48:25,23:25:866:23:828:-60.3947,0,-63.8045	0/1:165:84,81:84:2954:81:2860:-207.965,0,-216.421	0/1:135:55,80:55:1925:80:2861:-217.087,0,-132.884	0/0:129:129,0:129:4548:0:0:0,-38.8329,-409.487	0/1:104:39,65:39:1392:65:2319:-177.663,0,-94.2719	0/1:131:60,71:60:2139:71:2529:-188.424,0,-153.342	0/1:166:72,94:72:2516:94:3376:-253.998,0,-176.719	0/1:98:49,48:49:1711:48:1701:-123.814,0,-124.71	0/0:146:146,0:146:5196:0:0:0,-43.9504,-467.78	0/0:82:81,1:81:2823:1:36:0,-21.0862,-250.707	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:109:109,0:109:3857:0:0:0,-32.8123,-347.325	0/1:56:20,36:20:716:36:1279:-98.5548,0,-47.91	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:168:88,80:88:3107:80:2845:-205.715,0,-229.273	0/1:46:20,26:20:700:26:921:-68.9868,0,-49.4761	0/1:6:4,2:4:129:2:72:-5.03054,0,-10.1215	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	0/1:99:58,41:58:2030:41:1457:-101.617,0,-153.167	0/0:130:130,0:130:4573:0:0:0,-39.1339,-411.737	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:210:97,113:97:3463:113:4037:-300.245,0,-248.666	0/0:211:208,3:208:7326:3:108:0,-53.4422,-649.307	0/1:102:69,33:69:2446:33:1184:-76.1633,0,-189.69	0/0:105:105,0:105:3712:0:0:0,-31.6081,-334.281	0/1:176:82,93:82:2873:93:3269:-241.506,0,-205.922	0/1:179:44,134:44:1528:134:4730:-371.914,0,-83.8635	0/0:52:52,0:52:1809:0:0:0,-15.6536,-163.087	0/0:78:78,0:78:2732:0:0:0,-23.4803,-246.121	0/0:137:137,0:137:4895:0:0:0,-41.2411,-440.702	0/1:30:20,10:20:668:10:360:-23.7134,0,-51.3524	0/0:83:83,0:83:2913:0:0:0,-24.9855,-262.404	0/0:145:145,0:145:5153:0:0:0,-43.6493,-463.907	0/0:187:187,0:187:6610:0:0:0,-56.2926,-594.982	0/0:203:203,0:203:7171:0:0:0,-61.1091,-645.448	0/1:136:56,80:56:1980:80:2835:-214.447,0,-137.532	0/1:219:100,119:100:3554:119:4250:-316.752,0,-254.144	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:175:172,3:172:6075:3:108:0,-42.6051,-536.781	0/0:160:160,0:160:5631:0:0:0,-48.1648,-506.912	0/0:247:247,0:247:8680:0:0:0,-74.3544,-781.198	0/0:163:163,0:163:5773:0:0:0,-49.0679,-519.685	0/0:129:129,0:129:4570:0:0:0,-38.8329,-411.467	0/1:129:77,52:77:2722:52:1868:-129.566,0,-206.391	0/0:210:207,1:207:7283:1:36:0,-59.3508,-651.984	0/1:48:28,20:28:980:20:720:-50.6793,0,-74.0607	0/1:127:65,62:65:2266:62:2208:-160.752,0,-165.97	0/0:110:110,0:110:3816:0:0:0,-33.1133,-343.638	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:111:53,58:53:1853:58:2068:-152.977,0,-133.631	0/1:142:52,90:52:1826:90:3154:-241.23,0,-121.873	0/0:174:174,0:174:6104:0:0:0,-52.3792,-548.975	0/0:233:232,1:232:8115:1:36:0,-66.5417,-726.779
chr04	15060547	.	G	A	105207	PASS	AB=0.486554;ABP=8.03225;AC=140;AF=0.752688;AN=186;AO=4946;CIGAR=1X;DP=6605;DPB=6605;DPRA=11.9547;EPP=10578.7;EPPR=3512.54;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.9802;MQMR=59.9903;NS=93;NUMALT=1;ODDS=0.68142;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176789;QR=59038;RO=1652;RPL=4946;RPP=10743.1;RPPR=3572.93;RPR=0;RUN=1;SAF=19;SAP=10578.7;SAR=4927;SRF=7;SRP=3529.74;SRR=1645;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:13,19:13:464:19:680:-51.8962,0,-32.4645	1/1:111:0,110:0:0:110:3929:-353.59,-33.1133,0	1/1:82:0,82:0:0:82:2925:-263.484,-24.6845,0	1/1:127:1,126:1:21:126:4486:-401.808,-36.1309,0	1/1:35:1,34:1:36:34:1220:-106.509,-6.93778,0	1/1:44:0,44:0:0:44:1580:-142.487,-13.2453,0	0/1:64:36,28:36:1265:28:1008:-71.7704,0,-94.8847	0/1:151:80,71:80:2857:71:2548:-184.115,0,-211.911	0/1:59:36,23:36:1292:23:824:-56.7225,0,-98.823	1/1:85:0,85:0:0:85:3020:-272.028,-25.5876,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:86:0,86:0:0:86:3062:-275.799,-25.8886,0	1/1:93:0,93:0:0:93:3324:-299.376,-27.9958,0	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	0/1:85:47,38:47:1688:38:1364:-97.4732,0,-126.619	1/1:82:0,82:0:0:82:2928:-263.755,-24.6845,0	0/1:58:30,28:30:1072:28:1004:-73.2161,0,-79.3327	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/1:138:54,84:54:1921:84:3001:-228.778,0,-131.623	0/1:117:63,54:63:2252:54:1929:-138.656,0,-167.723	0/1:28:22,6:22:788:6:216:-11.3617,0,-62.816	0/1:34:14,20:14:500:20:716:-54.5327,0,-35.1012	1/1:80:3,77:3:108:77:2764:-238.926,-14.0072,0	1/1:46:0,46:0:0:46:1637:-147.617,-13.8474,0	0/1:231:124,107:124:4437:107:3817:-274.189,0,-329.962	0/1:151:68,83:68:2409:83:2965:-221.626,0,-171.61	0/1:42:21,21:21:756:21:756:-55.724,0,-55.724	0/1:152:72,78:72:2592:78:2787:-205.448,0,-188.014	0/1:112:47,65:47:1684:65:2332:-176.424,0,-118.132	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:166:0,166:0:0:166:5972:-537.583,-49.971,0	1/1:50:0,50:0:0:50:1768:-159.4,-15.0515,0	0/1:49:19,30:19:680:30:1080:-82.7628,0,-46.7787	.:.:.:.:.:.:.:.	0/1:75:34,41:34:1201:41:1476:-110.559,0,-85.8164	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	0/1:91:39,52:39:1392:52:1841:-138.575,0,-98.1853	0/1:85:55,30:55:1960:30:1065:-70.5722,0,-151.088	1/1:82:0,81:0:0:81:2904:-261.236,-24.3834,0	0/1:50:34,15:34:1220:15:540:-33.8262,0,-94.9965	0/1:58:35,23:35:1252:23:809:-55.6686,0,-95.5253	0/1:92:49,43:49:1756:43:1525:-109.846,0,-130.629	0/1:64:34,30:34:1212:30:1050:-75.5403,0,-90.1204	1/1:74:0,74:0:0:74:2640:-237.846,-22.2762,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:27:13,14:13:468:14:492:-36.4845,0,-34.3318	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:104:49,55:49:1733:55:1942:-143.745,0,-124.946	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:39:23,16:23:828:16:568:-39.7117,0,-63.1039	1/1:71:0,71:0:0:71:2530:-227.949,-21.3731,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:107:57,50:57:2044:50:1792:-129.352,0,-151.966	1/1:151:1,150:1:36:150:5335:-476.684,-41.8573,0	0/1:51:17,33:17:612:33:1184:-91.457,0,-40.0021	1/1:62:0,62:0:0:62:2205:-198.714,-18.6639,0	0/1:86:41,45:41:1460:45:1605:-118.85,0,-105.807	0/1:93:64,29:64:2288:29:1036:-65.5581,0,-178.186	1/1:27:0,27:0:0:27:961:-86.8053,-8.12781,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	0/1:18:9,9:9:324:9:312:-22.9962,0,-24.0873	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:82:0,82:0:0:82:2933:-264.199,-24.6845,0	1/1:120:0,120:0:0:120:4271:-384.567,-36.1236,0	1/1:131:0,131:0:0:131:4681:-421.45,-39.4349,0	0/1:80:44,36:44:1563:36:1296:-92.8615,0,-116.879	0/1:124:65,59:65:2328:59:2102:-152.122,0,-172.452	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:108:3,105:3:108:105:3733:-326.094,-22.4361,0	1/1:95:0,95:0:0:95:3386:-304.952,-28.5979,0	1/1:132:0,132:0:0:132:4752:-427.833,-39.736,0	1/1:115:0,115:0:0:115:4128:-371.703,-34.6185,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:91:37,54:37:1328:54:1940:-147.482,0,-92.4285	1/1:105:0,105:0:0:105:3740:-336.798,-31.6082,0	0/1:28:15,13:15:540:13:464:-33.6687,0,-40.5077	0/1:81:40,40:40:1436:40:1440:-105.455,0,-105.095	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:72:36,36:36:1292:36:1277:-93.558,0,-94.9096	0/1:83:50,33:50:1783:33:1184:-81.8805,0,-135.767	1/1:107:0,107:0:0:107:3839:-345.216,-32.2102,0	1/1:116:0,116:0:0:116:4151:-373.771,-34.9195,0
chr04	15240524	.	G	A	51860.4	PASS	AB=0.54131;ABP=84.2807;AC=48;AF=0.258065;AN=186;AO=2983;CIGAR=1X;DP=10698;DPB=10698;DPRA=1.17474;EPP=6428.5;EPPR=16623.7;GTI=1;LEN=1;MEANALT=1.05556;MQM=56.5364;MQMR=59.778;NS=93;NUMALT=1;ODDS=1.35207;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106884;QR=276108;RO=7710;RPL=6;RPP=6428.5;RPPR=16623.7;RPR=2977;RUN=1;SAF=2983;SAP=6480.51;SAR=0;SRF=7710;SRP=16745.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:12,12:12:428:12:428:-31.3945,0,-31.6295	0/0:188:188,0:188:6702:0:0:0,-56.5936,-603.218	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.717	0/0:278:277,1:277:9918:1:36:0,-80.0885,-888.752	0/0:51:50,1:50:1800:1:36:0,-11.756,-158.684	0/0:80:80,0:80:2845:0:0:0,-24.0824,-256.176	0/1:139:82,57:82:2948:57:2052:-142.96,0,-223.622	0/1:179:77,101:77:2756:101:3620:-270.833,0,-194.069	0/1:115:53,62:53:1896:62:2232:-165.371,0,-136.294	0/0:89:89,0:89:3192:0:0:0,-26.7917,-286.967	0/0:91:91,0:91:3248:0:0:0,-27.3937,-292.439	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.385	0/0:95:95,0:95:3384:0:0:0,-28.5978,-304.765	0/0:114:114,0:114:4087:0:0:0,-34.3174,-368.008	0/0:85:85,0:85:3045:0:0:0,-25.5875,-274.277	0/1:78:40,38:40:1440:38:1364:-99.3944,0,-106.411	0/0:137:137,0:137:4924:0:0:0,-41.2411,-443.113	0/1:94:45,49:45:1620:49:1760:-128.545,0,-117.784	0/1:70:29,41:29:1040:41:1472:-111.152,0,-72.8423	0/1:206:113,93:113:4049:93:3344:-238.659,0,-302.574	0/1:191:79,112:79:2820:112:4001:-301.75,0,-196.54	0/1:69:24,45:24:864:45:1616:-124.196,0,-57.3115	0/1:129:66,63:66:2368:63:2264:-163.347,0,-174.41	0/0:122:121,1:121:4336:1:36:0,-33.1291,-386.663	0/0:62:61,1:61:2188:1:36:0,-15.0673,-193.589	0/1:448:183,263:183:6532:263:9343:-705.183,0,-453.374	0/1:259:122,137:122:4376:137:4924:-362.37,0,-316.036	0/1:51:29,22:29:1029:22:792:-56.0875,0,-77.5686	0/1:239:113,126:113:4060:126:4528:-335.362,0,-293.595	0/1:173:98,75:98:3524:75:2676:-188.824,0,-265.281	0/0:229:229,0:229:8152:0:0:0,-68.9359,-733.684	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:2,5:2:68:5:176:-14.0709,0,-4.3505	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:288:288,0:288:10315:0:0:0,-86.6966,-928.206	0/0:195:195,0:195:6959:0:0:0,-58.7008,-626.355	0/1:95:52,43:52:1864:43:1548:-109.563,0,-139.376	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	0/1:185:95,90:95:3388:90:3240:-234.996,0,-249.349	0/1:41:22,19:22:792:19:684:-49.4843,0,-59.2276	0/1:50:12,38:12:428:38:1368:-108.312,0,-23.8073	0/1:133:52,81:52:1868:81:2904:-221.168,0,-128.362	0/0:99:99,0:99:3526:0:0:0,-29.802,-317.51	0/1:124:60,64:60:2152:64:2281:-168.148,0,-156.619	0/1:124:57,67:57:2039:67:2412:-179.31,0,-146.446	0/1:211:97,113:97:3488:113:4048:-300.543,0,-250.552	0/1:119:68,51:68:2440:51:1821:-128.054,0,-184.032	0/0:177:176,1:176:6267:1:36:0,-49.6845,-560.393	0/0:106:106,0:106:3770:0:0:0,-31.9092,-339.498	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0286	0/0:94:94,0:94:3361:0:0:0,-28.2968,-302.691	0/1:82:26,56:26:932:56:1997:-155.198,0,-59.4919	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:104:35,69:35:1252:69:2469:-190.906,0,-81.6764	0/1:54:16,38:16:572:38:1368:-107.046,0,-35.5578	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:143:69,74:69:2472:74:2656:-194.423,0,-179.555	0/0:143:140,3:140:5013:3:108:0,-32.9734,-441.225	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:232:98,134:98:3479:134:4801:-362.018,0,-243.479	0/0:202:200,2:200:7171:2:68:0,-54.3509,-638.966	0/1:84:28,56:28:1008:56:1997:-154.628,0,-65.7467	0/0:106:106,0:106:3799:0:0:0,-31.9092,-342.019	0/1:252:122,130:122:4392:130:4649:-342.24,0,-319.589	0/1:90:14,76:14:504:76:2717:-217.602,0,-18.605	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:77:77,0:77:2747:0:0:0,-23.1793,-247.43	0/0:133:133,0:133:4771:0:0:0,-40.037,-429.5	0/1:15:5,10:5:176:10:356:-27.8615,0,-11.6696	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.333	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.46	0/0:278:278,0:278:9969:0:0:0,-83.6863,-897.129	0/0:145:145,0:145:5212:0:0:0,-43.6493,-468.976	0/1:145:63,82:63:2256:82:2948:-220.298,0,-159.653	0/1:217:101,116:101:3628:116:4152:-307.528,0,-261.391	1/1:1:0,1:0:0:1:36:-3.53612,-0.30103,0	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.858	0/0:103:102,1:102:3668:1:36:0,-27.4129,-326.71	0/0:159:159,0:159:5685:0:0:0,-47.8638,-511.67	0/0:136:136,0:136:4869:0:0:0,-40.9401,-438.248	0/0:94:94,0:94:3375:0:0:0,-28.2968,-303.963	0/1:169:88,81:88:3151:81:2916:-211.259,0,-232.926	0/0:185:185,0:185:6640:0:0:0,-55.6905,-597.613	0/1:59:36,23:36:1296:23:824:-56.6026,0,-99.1832	0/1:83:43,40:43:1548:40:1440:-104.009,0,-114.628	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.444	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.53	0/1:95:43,52:43:1548:52:1864:-139.093,0,-111.014	0/1:89:32,57:32:1148:57:2044:-157.282,0,-76.8374	0/0:127:126,0:126:4516:0:0:0,-37.9298,-406.35	0/0:146:146,0:146:5252:0:0:0,-43.9504,-472.752
chr04	15251252	.	C	T	60572	PASS	AB=0.513288;ABP=5.9535;AC=141;AF=0.75;AN=188;AO=2889;CIGAR=1X;DP=3831;DPB=3831;DPRA=0;EPP=6267.71;EPPR=2026.86;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.963;MQMR=59.9989;NS=94;NUMALT=1;ODDS=2.25996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103271;QR=33548;RO=940;RPL=1;RPP=6267.71;RPPR=2026.86;RPR=2888;RUN=1;SAF=2889;SAP=6276.39;SAR=0;SRF=940;SRP=2044.19;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	1/1:114:0,114:0:0:114:4075:-366.934,-34.3174,0	1/1:101:0,101:0:0:101:3602:-324.387,-30.404,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:11:0,10:0:0:10:360:-32.4207,-3.0103,0	0/1:41:18,23:18:635:23:819:-61.6893,0,-45.1347	0/1:65:37,28:37:1328:28:997:-70.4769,0,-100.255	0/1:44:25,19:25:892:19:684:-48.645,0,-67.3544	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:46:0,46:0:0:46:1635:-147.436,-13.8474,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:26:0,26:0:0:26:904:-81.6728,-7.82678,0	1/1:21:0,20:0:0:20:716:-64.408,-6.0206,0	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:18:11,7:11:388:7:252:-17.6021,0,-29.8388	0/1:31:17,14:17:612:14:504:-36.3662,0,-46.0815	0/1:49:27,22:27:968:22:788:-56.4943,0,-72.6869	0/1:73:42,31:42:1495:31:1112:-78.4162,0,-112.869	0/1:49:30,19:30:1056:19:684:-47.1399,0,-80.6	0/1:51:28,23:28:1008:23:824:-59.1308,0,-75.6838	1/1:29:2,27:2:72:27:964:-80.2401,-1.89315,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:96:43,53:43:1544:53:1896:-142.019,0,-110.354	0/1:101:52,49:52:1856:49:1738:-126.298,0,-136.916	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:99:39,60:39:1391:60:2139:-162.975,0,-95.6863	0/1:52:26,26:26:932:26:932:-68.5453,0,-68.5453	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:88:1,87:1:36:87:3116:-277.068,-22.8924,0	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	0/1:29:13,16:13:468:16:568:-42.722,0,-33.7298	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:61:23,38:23:820:38:1368:-105.058,0,-55.7597	0/1:44:22,22:22:783:22:788:-57.6801,0,-57.5476	0/1:50:29,21:29:1027:21:748:-52.5938,0,-77.6907	0/1:16:6,10:6:212:10:360:-27.9278,0,-14.6083	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:36:10,26:10:356:26:928:-73.0012,0,-21.5442	0/1:38:24,14:24:864:14:500:-33.897,0,-66.6434	0/1:80:31,49:31:1112:49:1729:-131.803,0,-76.3089	0/1:37:19,18:19:676:18:639:-46.7001,0,-50.0299	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:89:0,89:0:0:89:3180:-286.425,-26.7917,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:56:0,56:0:0:56:1983:-178.742,-16.8577,0	0/1:27:20,7:20:711:7:252:-14.9011,0,-56.1878	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:49:19,30:19:676:30:1067:-81.5899,0,-46.4175	0/1:13:9,4:9:316:4:144:-9.40023,0,-24.8655	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:42:13,29:13:464:29:1040:-81.2711,0,-29.4542	1/1:60:1,59:1:36:59:2104:-186.02,-14.4635,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:81:36,45:36:1280:45:1605:-120.355,0,-91.1198	1/1:80:0,80:0:0:80:2856:-257.278,-24.0824,0	0/1:28:10,18:10:360:18:644:-49.8618,0,-24.3155	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:69:30,39:30:1072:39:1396:-105.168,0,-76.0214	0/1:70:46,24:46:1639:24:864:-57.0105,0,-126.726	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:31:0,31:0:0:31:1111:-100.301,-9.33193,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:98:0,98:0:0:98:3516:-316.649,-29.5009,0	0/1:39:20,19:20:716:19:680:-49.789,0,-53.0275	0/1:56:30,26:30:1072:26:928:-66.98,0,-79.9348	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	1/1:58:1,57:1:36:57:2016:-178.112,-13.8615,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:81:0,81:0:0:81:2888:-260.155,-24.3834,0	1/1:23:0,23:0:0:23:817:-73.8432,-6.92369,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:24:7,17:7:244:17:608:-47.8273,0,-15.0747	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/1:34:16,18:16:572:18:648:-48.4169,0,-41.5784	1/1:38:1,37:1:36:37:1319:-115.413,-7.84087,0	1/1:29:0,29:0:0:29:1029:-92.922,-8.72987,0	0/1:65:31,34:31:1108:34:1220:-90.5399,0,-80.464	0/1:37:26,11:26:923:11:396:-24.8446,0,-72.2487	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0
chr04	15281731	.	C	T	27353.6	PASS	AB=0.416419;ABP=207.01;AC=43;AF=0.233696;AN=184;AO=1412;CIGAR=1X;DP=8175;DPB=8175;DPRA=0.861174;EPP=3069.13;EPPR=14684.3;GTI=2;LEN=1;MEANALT=1.02041;MQM=59.8711;MQMR=59.9028;NS=92;NUMALT=1;ODDS=4.25098;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50129;QR=237966;RO=6761;RPL=1118;RPP=1047.19;RPPR=21.9754;RPR=294;RUN=1;SAF=1118;SAP=1047.19;SAR=294;SRF=3502;SRP=21.9754;SRR=3259;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:45,17:45:1587:17:612:-36.7496,0,-124.453	0/0:76:76,0:76:2655:0:0:0,-22.8783,-239.193	0/0:169:169,0:169:5990:0:0:0,-50.8741,-539.209	0/0:163:163,0:163:5762:0:0:0,-49.0679,-518.694	0/0:53:53,0:53:1859:0:0:0,-15.9546,-167.559	0/0:35:35,0:35:1210:0:0:0,-10.536,-109.199	0/1:109:65,44:65:2270:44:1572:-108.957,0,-171.748	0/0:118:116,2:116:4108:2:72:0,-28.6848,-363.066	0/1:92:62,30:62:2220:30:1063:-68.2502,0,-172.367	0/0:121:120,1:120:4251:1:36:0,-32.8264,-379.167	0/0:73:73,0:73:2573:0:0:0,-21.9752,-231.817	0/0:126:126,0:126:4430:0:0:0,-37.9298,-398.874	0/0:147:147,0:147:5204:0:0:0,-44.2514,-468.501	0/0:126:126,0:126:4393:0:0:0,-37.9298,-395.23	0/0:99:99,0:99:3459:0:0:0,-29.802,-311.524	0/1:74:46,28:46:1640:28:1004:-68.3996,0,-125.612	0/0:86:86,0:86:3024:0:0:0,-25.8886,-272.392	0/1:51:40,11:40:1385:11:396:-20.6302,0,-109.589	0/1:22:11,11:11:392:11:396:-29.3567,0,-28.9974	0/1:91:60,31:60:2099:31:1100:-71.9162,0,-161.781	0/1:92:71,21:71:2494:21:756:-40.6725,0,-197.016	0/1:142:38,104:38:1330:104:3672:-287.909,0,-77.252	0/1:58:39,19:39:1336:19:667:-42.8949,0,-103.07	0/0:80:75,5:75:2654:5:172:0,-8.26442,-223.216	0/0:122:122,0:122:4289:0:0:0,-36.7257,-386.189	0/1:222:101,121:101:3533:121:4261:-316.837,0,-251.261	0/1:109:81,28:81:2886:28:1000:-57.5031,0,-227.162	0/1:38:22,16:22:780:16:576:-40.7358,0,-59.0839	0/1:216:116,100:116:4097:100:3583:-257.592,0,-303.893	0/1:88:49,39:49:1738:39:1385:-98.4562,0,-130.209	0/0:100:100,0:100:3551:0:0:0,-30.103,-319.797	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:191:191,0:191:6646:0:0:0,-57.4967,-598.224	0/0:93:93,0:93:3262:0:0:0,-27.9958,-293.796	0/1:48:25,23:25:864:23:828:-60.3947,0,-63.6229	.:.:.:.:.:.:.:.	0/1:88:65,23:65:2281:23:828:-48.3526,0,-179.061	0/1:43:29,14:29:1040:14:500:-32.3857,0,-80.9701	0/1:48:33,15:33:1179:15:540:-34.4871,0,-91.9678	0/1:72:40,32:40:1389:32:1148:-81.6848,0,-103.627	0/0:65:65,0:65:2255:0:0:0,-19.5669,-203.209	0/1:140:60,80:60:2135:80:2803:-210.363,0,-150.184	0/1:85:56,29:56:1968:29:1001:-64.8077,0,-151.803	0/1:79:44,35:44:1544:35:1256:-89.5631,0,-115.468	0/1:110:78,32:78:2718:32:1132:-69.0548,0,-211.748	0/0:139:139,0:139:4922:0:0:0,-41.8432,-443.131	0/0:128:128,0:128:4521:0:0:0,-38.5318,-407.027	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:182:182,0:182:6480:0:0:0,-54.7875,-583.286	0/1:58:37,21:37:1268:21:756:-50.9066,0,-96.9548	0/0:21:21,0:21:735:0:0:0,-6.32163,-66.3988	0/1:68:48,20:48:1724:20:707:-43.4845,0,-134.975	0/0:37:37,0:37:1292:0:0:0,-11.1381,-116.578	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.377	0/1:9:4,5:4:129:5:180:-13.8428,0,-9.21839	0/1:74:47,27:47:1647:27:964:-64.8006,0,-126.238	0/0:136:133,2:133:4691:2:63:0,-35.0007,-416.35	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:138:68,70:68:2423:70:2481:-181.995,0,-176.783	0/0:153:153,0:153:5341:0:0:0,-46.0576,-480.816	0/1:75:48,27:48:1674:27:955:-63.6876,0,-128.364	0/0:64:64,0:64:2265:0:0:0,-19.2659,-204.108	0/1:101:69,32:69:2425:32:1135:-72.0536,0,-188.097	0/1:109:42,67:42:1452:67:2378:-181.465,0,-98.1566	0/0:80:80,0:80:2787:0:0:0,-24.0824,-251.072	0/0:68:68,0:68:2379:0:0:0,-20.47,-214.362	0/0:70:70,0:70:2447:0:0:0,-21.0721,-220.483	0/1:25:14,11:14:504:11:387:-27.6378,0,-38.1723	0/0:109:109,0:109:3864:0:0:0,-32.8123,-347.939	0/0:118:118,0:118:4160:0:0:0,-35.5215,-374.514	0/0:176:176,0:176:6210:0:0:0,-52.9813,-558.628	0/0:100:100,0:100:3548:0:0:0,-30.103,-319.518	0/1:124:87,37:87:3104:37:1286:-78.6902,0,-242.204	0/1:55:34,21:34:1194:21:744:-50.7277,0,-91.2058	0/1:13:6,7:6:203:7:244:-18.386,0,-14.6878	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/0:126:126,0:126:4457:0:0:0,-37.9298,-401.302	0/0:182:182,0:182:6383:0:0:0,-54.7875,-574.546	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:119:119,0:119:4211:0:0:0,-35.8226,-379.171	0/1:37:23,14:23:783:14:504:-34.56,0,-59.6356	0/0:143:142,0:142:4971:0:0:0,-42.7463,-447.172	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	0/1:77:39,38:39:1367:38:1355:-99.0704,0,-100.109	0/0:124:124,0:124:4358:0:0:0,-37.3277,-392.362	0/0:95:94,1:94:3236:1:36:0,-24.9996,-287.863	0/1:137:76,61:76:2679:61:2167:-154.055,0,-200.112	0/1:51:20,31:20:695:31:1104:-84.3179,0,-47.5179	0/0:137:136,1:136:4846:1:36:0,-37.6428,-432.691	0/0:145:145,0:145:5044:0:0:0,-43.6493,-454.106
chr04	15281827	.	CACAG	CACAC,TACAC	166345	PASS	AB=0.498492,0.494379;ABP=3.08234,4.01119;AC=144,44;AF=0.765957,0.234043;AN=188;AO=5989,1816;CIGAR=4M1X,1X3M1X;DP=7848;DPB=7864.8;DPRA=0,1.07371;EPP=12990.6,3929.05;EPPR=0;GTI=0;LEN=1,5;MEANALT=1.97872,2.5098;MQM=59.9741,59.5149;MQMR=0;NS=94;NUMALT=2;ODDS=0.822214;PAIRED=0,0;PAIREDR=0;PAO=42,42;PQA=1232,1232;PQR=0;PRO=0;QA=212584,63114;QR=0;RO=0;RPL=5983,1814;RPP=12955.9,3929.05;RPPR=0;RPR=6,2;RUN=1,1;SAF=5985,1816;SAP=12973.2,3946.4;SAR=4,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,25,25:0:0:25,25:900,860:-143.252,-69.8094,-62.2836,-73.4354,0,-65.9097	1/1:47:0,47,0:0:0:47,0:1678,0:-151.189,-14.1484,0,-151.189,-14.1484,-151.189	1/1:251:0,251,0:0:0:251,0:8871,0:-798.319,-75.5585,0,-798.319,-75.5585,-798.319	1/1:173:0,172,0:0:0:172,0:6136,0:-551.924,-51.7772,0,-551.924,-51.7772,-551.924	1/1:28:0,26,0:0:0:26,0:910,0:-81.8595,-7.82678,0,-81.8595,-7.82678,-81.8595	1/1:19:0,19,0:0:0:19,0:684,0:-61.8333,-5.71957,0,-61.8333,-5.71957,-61.8333	1/2:44:0,20,24:0:0:20,24:701,843:-125.999,-68.9585,-62.9379,-57.3911,0,-50.1664	1/1:129:0,129,0:0:0:129,0:4599,0:-413.897,-38.8329,0,-413.897,-38.8329,-413.897	1/2:72:0,29,43:0:0:29,43:1036,1505:-207.214,-122.745,-114.015,-84.824,0,-71.8798	1/1:113:0,113,0:0:0:113,0:4019,0:-361.782,-34.0164,0,-361.782,-34.0164,-361.782	1/1:87:0,87,0:0:0:87,0:3093,0:-278.407,-26.1896,0,-278.407,-26.1896,-278.407	1/1:94:0,93,0:0:0:93,0:3302,0:-297.037,-27.9958,0,-297.037,-27.9958,-297.037	1/1:104:0,104,0:0:0:104,0:3667,0:-330.234,-31.3071,0,-330.234,-31.3071,-330.234	1/1:61:0,61,0:0:0:61,0:2145,0:-193.314,-18.3628,0,-193.314,-18.3628,-193.314	1/1:91:0,88,2:0:0:88,2:3164,71:-284.608,-26.4906,0,-278.823,-20.7489,-278.221	1/2:92:0,39,52:0:0:39,52:1382,1846:-262.92,-150.338,-138.598,-112.523,0,-96.869	1/1:51:0,51,0:0:0:51,0:1796,0:-161.919,-15.3525,0,-161.919,-15.3525,-161.919	1/2:53:0,28,25:0:0:28,25:1000,879:-153.424,-71.8919,-63.4631,-81.8865,0,-74.3608	1/2:28:0,16,12:0:0:16,12:552,418:-79.1798,-34.3401,-29.5237,-45.1864,0,-41.574	1/2:144:0,70,74:0:0:70,74:2466,2595:-412.291,-211.523,-190.451,-201.12,0,-178.844	1/2:130:0,64,65:0:0:64,65:2273,2277:-370.422,-185.21,-165.944,-185.181,0,-165.614	1/2:87:0,34,53:0:0:34,53:1215,1829:-247.877,-148.81,-138.575,-99.3041,0,-83.3495	1/2:117:0,67,50:0:0:67,50:2356,1743:-333.826,-142.05,-121.881,-192.126,0,-177.075	1/1:58:0,55,3:0:0:55,3:1952,108:-175.575,-16.5567,0,-166.762,-7.42469,-165.859	1/1:93:0,91,0:0:0:91,0:3242,0:-291.656,-27.3937,0,-291.656,-27.3937,-291.656	1/2:202:0,93,107:0:0:93,107:3314,3687:-569.54,-299.409,-271.413,-270.064,0,-237.854	1/2:266:0,143,122:0:0:143,122:5083,4279:-762.271,-348.057,-305.009,-414.098,0,-377.373	1/2:44:0,20,24:0:0:20,24:720,846:-127.806,-69.0572,-63.0366,-58.9368,0,-51.7121	1/2:221:0,125,95:0:0:125,95:4458,3360:-636.901,-273.494,-235.865,-363.402,0,-334.804	1/2:86:0,49,37:0:0:49,37:1729,1308:-247.45,-106.662,-91.9113,-141.083,0,-129.945	1/1:79:0,78,0:0:0:78,0:2742,0:-246.662,-23.4803,0,-246.662,-23.4803,-246.662	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:28:0,28,0:0:0:28,0:999,0:-90.2245,-8.42884,0,-90.2245,-8.42884,-90.2245	1/1:160:0,159,0:0:0:159,0:5627,0:-506.131,-47.8638,0,-506.131,-47.8638,-506.131	1/1:85:0,85,0:0:0:85,0:3044,0:-274.13,-25.5876,0,-274.13,-25.5876,-274.13	1/2:71:0,36,35:0:0:36,35:1238,1201:-198.327,-97.7915,-86.9545,-100.822,0,-90.2855	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:73:0,43,30:0:0:43,30:1527,1071:-211.97,-87.5508,-74.6065,-124.661,0,-115.63	1/2:51:0,23,25:0:0:23,25:815,867:-136.889,-70.4913,-63.5676,-66.4304,0,-58.9047	1/2:122:0,64,57:0:0:64,57:2271,2027:-350.072,-165.041,-145.775,-185.027,0,-167.868	1/2:60:0,31,27:0:0:31,27:1116,911:-164.921,-73.8484,-64.5165,-91.1023,0,-82.9745	1/1:51:0,51,0:0:0:51,0:1810,0:-163.18,-15.3525,0,-163.18,-15.3525,-163.18	1/2:94:0,51,42:0:0:51,42:1824,1451:-266.616,-117.878,-102.525,-148.729,0,-136.086	1/2:122:0,68,53:0:0:68,53:2391,1805:-341.018,-146.396,-125.926,-194.608,0,-178.653	1/2:168:0,86,81:0:0:86,81:3039,2797:-474.694,-227.19,-201.302,-247.522,0,-223.138	1/2:66:0,34,31:0:0:34,31:1216,1085:-187.32,-88.1633,-77.9283,-99.0552,0,-89.7232	1/1:138:0,137,0:0:0:137,0:4856,0:-436.826,-41.2411,0,-436.826,-41.2411,-436.826	1/1:71:0,70,1:0:0:70,1:2495,36:-224.265,-21.0721,0,-221.328,-17.7749,-221.027	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:96:0,95,0:0:0:95,0:3372,0:-303.275,-28.5979,0,-303.275,-28.5979,-303.275	1/2:33:0,10,23:0:0:10,23:360,789:-93.7791,-64.3998,-61.3895,-29.734,0,-22.8103	1/1:6:0,6,0:0:0:6,0:212,0:-19.3746,-1.80618,0,-19.3746,-1.80618,-19.3746	1/2:118:0,65,53:0:0:65,53:2324,1781:-334.118,-144.61,-125.043,-189.853,0,-173.899	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,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chr04	15281842	.	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chr04	15581021	.	T	C	17531.8	PASS	AB=0.504565;ABP=3.38699;AC=44;AF=0.234043;AN=188;AO=1050;CIGAR=1X;DP=4299;DPB=4299;DPRA=1.06617;EPP=2265.72;EPPR=6958.56;GTI=0;LEN=1;MEANALT=1.02273;MQM=59.9457;MQMR=59.9898;NS=94;NUMALT=1;ODDS=3.01815;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37450;QR=115721;RO=3247;RPL=2;RPP=2265.72;RPPR=6958.56;RPR=1048;RUN=1;SAF=1050;SAP=2283.06;SAR=0;SRF=3247;SRP=7053.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:20,4:20:705:4:144:-6.0889,0,-56.5481	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:120:119,0:119:4215:0:0:0,-35.8226,-379.318	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:55:27,28:27:960:28:1001:-73.8485,0,-70.1596	0/0:55:55,0:55:1942:0:0:0,-16.5566,-175.052	0/1:54:23,31:23:809:31:1107:-83.3662,0,-56.8727	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2424	0/0:41:41,0:41:1449:0:0:0,-12.3422,-130.704	0/0:39:39,0:39:1381:0:0:0,-11.7402,-124.587	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:19:4,15:4:144:15:540:-43.2123,0,-7.59405	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:15:5,10:5:180:10:356:-27.8576,0,-12.0366	0/1:21:14,7:14:504:7:248:-16.3426,0,-39.3765	0/1:47:23,24:23:824:24:849:-62.5794,0,-60.3349	0/1:67:40,27:40:1412:27:964:-66.9078,0,-107.201	0/1:65:24,41:24:860:41:1476:-113.568,0,-58.1549	0/1:78:40,38:40:1423:38:1356:-98.8601,0,-104.886	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:157:74,83:74:2637:83:2950:-218.47,0,-190.314	0/1:93:41,52:41:1468:52:1853:-139.052,0,-104.42	0/1:12:7,4:7:252:4:144:-9.64246,0,-19.3578	0/1:104:50,54:50:1796:54:1920:-141.769,0,-130.615	0/1:67:33,34:33:1179:34:1188:-87.0531,0,-86.2482	0/0:79:79,0:79:2810:0:0:0,-23.7814,-253.137	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7675	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.156	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.282	0/1:23:8,15:8:284:15:531:-41.1982,0,-18.9797	0/1:7:4,3:4:144:3:100:-7.22323,0,-11.2064	0/1:43:21,22:21:752:22:788:-58.3005,0,-55.062	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/1:59:25,34:25:885:34:1212:-91.6256,0,-62.2058	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/1:72:42,30:42:1508:30:1072:-75.1183,0,-114.34	0/1:35:20,15:20:690:15:540:-38.4005,0,-51.8808	0/1:89:53,36:53:1832:36:1283:-88.981,0,-138.36	0/1:43:20,23:20:716:23:820:-61.1782,0,-51.8234	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.512	0/1:41:10,31:10:356:31:1105:-87.4174,0,-20.039	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:65:31,34:31:1116:34:1220:-90.5399,0,-81.1847	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:62:25,37:25:881:37:1328:-101.158,0,-60.942	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:82:40,42:40:1432:42:1500:-110.61,0,-104.493	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.542	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:63:35,28:35:1241:28:1004:-71.711,0,-93.0276	0/1:77:30,47:30:1072:47:1684:-128.668,0,-73.6131	0/0:28:28,0:28:988:0:0:0,-8.42884,-89.233	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:19:7,12:7:252:12:428:-33.1392,0,-17.3094	0/0:86:86,0:86:3057:0:0:0,-25.8886,-275.359	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.382	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:88:88,0:88:3129:0:0:0,-26.4906,-281.833	0/1:77:36,41:36:1292:41:1440:-106.706,0,-93.4045	0/1:61:34,27:34:1220:27:968:-69.0745,0,-91.744	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:74:74,0:74:2621:0:0:0,-22.2762,-236.137	0/0:116:116,0:116:4141:0:0:0,-34.9195,-372.873	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/1:17:14,3:14:504:3:108:-4.95766,0,-40.5806	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:39:19,20:19:684:20:707:-52.2144,0,-50.1502	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:69:41,28:41:1472:28:1004:-69.9048,0,-112.005	0/1:29:12,17:12:413:17:604:-45.9607,0,-28.768	0/0:67:67,0:67:2382:0:0:0,-20.169,-214.634	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47
chr04	15581470	.	T	C	62792	PASS	AB=0.396713;ABP=211.596;AC=142;AF=0.763441;AN=186;AO=3029;CIGAR=1X;DP=4395;DPB=4395;DPRA=19.2967;EPP=6580.4;EPPR=2969.24;GTI=4;LEN=1;MEANALT=1;MQM=59.9964;MQMR=60;NS=93;NUMALT=1;ODDS=0.177654;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108521;QR=48692;RO=1366;RPL=3029;RPP=6580.4;RPPR=2969.24;RPR=0;RUN=1;SAF=0;SAP=6580.4;SAR=3029;SRF=0;SRP=2969.24;SRR=1366;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:58:0,58:0:0:58:2074:-186.929,-17.4597,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:70:48,22:48:1709:22:792:-50.5336,0,-133.022	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:47:30,17:30:1072:17:612:-41.265,0,-82.644	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:27:11,16:11:366:16:576:-44.0472,0,-25.1307	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	0/1:16:11,5:11:392:5:180:-11.7356,0,-30.8036	0/1:98:44,54:44:1568:54:1914:-143.033,0,-111.911	0/1:64:42,22:42:1508:22:777:-50.9844,0,-116.749	0/1:103:75,28:75:2650:28:1004:-59.6698,0,-207.738	0/1:39:32,7:32:1152:7:252:-11.2888,0,-92.25	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:160:95,65:95:3373:65:2317:-160.624,0,-255.622	0/1:116:68,48:68:2436:48:1724:-120.526,0,-184.576	0/1:17:10,7:10:341:7:252:-17.9114,0,-25.9003	0/1:149:72,77:72:2560:77:2745:-202.438,0,-185.798	0/1:78:52,26:52:1868:26:932:-60.7185,0,-144.919	1/1:55:0,55:0:0:55:1967:-177.305,-16.5567,0	.:.:.:.:.:.:.:.	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:106:0,106:0:0:106:3816:-343.635,-31.9092,0	1/1:84:1,83:1:36:83:2970:-263.933,-21.6882,0	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:68:43,25:43:1483:25:896:-60.4903,0,-113.287	0/1:15:6,9:6:212:9:312:-23.8999,0,-14.9093	0/1:47:34,13:34:1193:13:468:-28.3112,0,-93.5248	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:41:27,14:27:964:14:504:-33.3559,0,-74.7346	0/1:82:48,34:48:1728:34:1220:-85.4223,0,-131.121	0/1:105:63,42:63:2264:42:1500:-103.686,0,-172.414	0/1:65:41,24:41:1453:24:864:-58.5156,0,-111.497	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	1/1:136:0,136:0:0:136:4861:-437.642,-40.9401,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:76:0,76:0:0:76:2723:-245.313,-22.8783,0	0/1:38:17,21:17:604:21:748:-56.2062,0,-43.2515	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:57:42,15:42:1508:15:540:-31.7778,0,-118.856	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:49:23,26:23:824:26:928:-69.0878,0,-59.7328	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	1/1:10:0,10:0:0:10:354:-32.1995,-3.0103,0	0/1:87:49,38:49:1748:38:1368:-97.2312,0,-131.415	1/1:107:0,107:0:0:107:3848:-346.514,-32.2102,0	0/1:46:26,20:26:928:20:720:-51.2814,0,-69.9909	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:76:47,29:47:1692:29:1044:-71.3965,0,-129.689	0/1:109:86,23:86:3076:23:820:-41.3102,0,-244.256	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:40:0,40:0:0:40:1434:-129.358,-12.0412,0	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	1/1:53:2,51:2:72:51:1828:-157.964,-9.11787,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:68:0,68:0:0:68:2414:-217.515,-20.47,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	0/1:84:41,43:41:1460:43:1536:-113.247,0,-106.409	0/1:29:17,12:17:612:12:428:-30.1289,0,-46.6836	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:101:0,101:0:0:101:3617:-325.733,-30.404,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:31:20,11:20:716:11:392:-26.2881,0,-55.4358	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:19:12,7:12:420:7:252:-17.3094,0,-32.4145	0/1:32:21,11:21:756:11:396:-26.3498,0,-58.7343	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:47:30,17:30:1072:17:608:-40.9036,0,-82.644	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0
chr04	15590870	.	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chr04	15639571	.	T	C	78599.7	PASS	AB=0.370298;ABP=523.491;AC=142;AF=0.755319;AN=188;AO=3981;CIGAR=1X;DP=6231;DPB=6231;DPRA=0;EPP=8647.64;EPPR=4882.31;GTI=6;LEN=1;MEANALT=1.03191;MQM=47.3793;MQMR=32.7361;NS=94;NUMALT=1;ODDS=0.356315;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142271;QR=80295;RO=2247;RPL=3981;RPP=8647.64;RPPR=4882.31;RPR=0;RUN=1;SAF=0;SAP=8647.64;SAR=3981;SRF=0;SRP=4882.31;SRR=2247;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:97:60,37:60:2152:37:1320:-88.2447,0,-134.366	1/1:38:0,38:0:0:38:1364:-120.122,-11.4391,0	1/1:98:0,98:0:0:98:3505:-308.572,-29.5009,0	1/1:170:0,170:0:0:170:6062:-540.655,-51.1751,0	1/1:34:0,34:0:0:34:1220:-109.1,-10.235,0	1/1:56:0,56:0:0:56:1993:-176.726,-16.8577,0	0/1:89:40,49:40:1417:49:1752:-130.089,0,-83.3369	1/1:43:0,43:0:0:43:1529:-135.495,-12.9443,0	0/1:137:95,42:95:3389:42:1504:-91.9438,0,-216.06	1/1:74:0,74:0:0:74:2640:-235.828,-22.2762,0	1/1:22:0,22:0:0:22:792:-70.7233,-6.62266,0	1/1:57:0,57:0:0:57:2044:-180.829,-17.1587,0	1/1:47:0,47:0:0:47:1680:-146.744,-14.1484,0	1/1:29:0,29:0:0:29:1040:-93.1069,-8.72987,0	1/1:42:0,42:0:0:42:1504:-134.433,-12.6433,0	0/1:33:14,19:14:504:19:684:-50.8722,0,-29.7245	1/1:12:0,12:0:0:12:428:-37.8834,-3.61236,0	0/1:18:7,11:7:252:11:396:-29.6175,0,-14.1305	0/1:23:12,11:12:432:11:392:-28.2253,0,-25.5033	0/1:198:138,60:138:4941:60:2126:-130.716,0,-329.092	0/1:116:81,35:81:2912:35:1260:-77.4494,0,-190.937	0/1:166:142,24:142:5058:24:864:-27.9058,0,-336.758	0/1:112:68,44:68:2414:44:1564:-106.094,0,-157.274	0/1:70:22,48:22:792:48:1720:-131.617,0,-40.5972	1/1:54:1,53:1:36:53:1893:-165.571,-12.6573,0	0/1:191:122,69:122:4392:69:2465:-163.853,0,-274.695	0/1:192:109,83:109:3901:83:2984:-208.11,0,-251.515	0/1:19:8,11:8:288:11:396:-29.7479,0,-17.5501	0/1:235:170,65:170:6063:65:2294:-135.463,0,-391.143	0/1:104:68,36:68:2440:36:1281:-82.1328,0,-162.538	1/1:96:0,96:0:0:96:3444:-306.464,-28.8989,0	0/1:5:2,3:2:72:3:108:-8.48192,0,-4.55134	0/1:28:22,6:22:769:6:216:-10.841,0,-52.7206	1/1:1:0,1:0:0:1:36:-3.54852,-0.30103,0	1/1:19:0,19:0:0:19:684:-59.6817,-5.71957,0	1/1:24:0,24:0:0:24:837:-73.9729,-7.22472,0	1/1:124:0,124:0:0:124:4452:-398.982,-37.3277,0	1/1:76:0,76:0:0:76:2716:-241.605,-22.8783,0	0/1:34:21,13:21:756:13:468:-31.6375,0,-47.7264	0/1:3:1,2:1:36:2:72:-5.87385,0,-2.28453	0/1:104:64,40:64:2296:40:1440:-96.6411,0,-151.261	0/1:16:5,11:5:180:11:396:-30.8516,0,-9.84659	0/1:171:111,60:111:3954:60:2151:-139.928,0,-259.881	0/1:41:23,18:23:824:18:648:-44.5612,0,-52.3493	1/1:25:0,25:0:0:25:873:-78.1507,-7.52575,0	0/1:117:78,39:78:2796:39:1400:-89.2077,0,-175.776	0/1:106:77,29:77:2752:29:1032:-60.0598,0,-177.678	0/1:116:86,30:86:3050:30:1076:-61.4409,0,-206.119	0/1:84:48,36:48:1724:36:1284:-88.6295,0,-111.067	1/1:67:0,67:0:0:67:2400:-214.619,-20.169,0	1/1:117:0,117:0:0:117:4204:-376.478,-35.2205,0	1/1:8:0,8:0:0:8:284:-25.5856,-2.40824,0	1/1:41:0,41:0:0:41:1472:-130.813,-12.3422,0	0/1:56:28,28:28:1004:28:985:-71.2902,0,-59.4496	1/1:5:0,5:0:0:5:168:-15.3027,-1.50515,0	0/1:71:43,28:43:1533:28:985:-66.1503,0,-98.7262	1/1:47:1,46:1:36:46:1652:-144.366,-10.9608,0	0/1:15:5,10:5:180:10:360:-28.1095,0,-9.53542	0/1:11:4,7:4:144:7:237:-16.6484,0,-7.99046	0/1:64:50,14:50:1792:14:504:-26.0326,0,-123.415	1/1:55:0,55:0:0:55:1976:-176.894,-16.5567,0	1/1:6:0,6:0:0:6:216:-19.6832,-1.80618,0	0/1:101:19,82:19:684:82:2936:-232.653,0,-22.134	1/1:65:0,65:0:0:65:2305:-203.612,-19.567,0	0/1:63:42,21:42:1508:21:756:-48.788,0,-101.359	1/1:50:1,49:1:36:49:1752:-153.672,-11.8639,0	0/1:87:58,29:58:2076:29:1025:-65.8615,0,-138.099	0/1:100:77,23:77:2749:23:824:-43.9634,0,-188.285	1/1:25:0,25:0:0:25:896:-80.2496,-7.52575,0	1/1:29:0,28:0:0:28:1000:-86.9626,-8.42884,0	1/1:16:0,16:0:0:16:553:-49.9806,-4.81648,0	0/1:16:10,6:10:360:6:208:-13.5183,0,-24.1327	1/1:82:0,82:0:0:82:2936:-259.843,-24.6845,0	1/1:68:0,68:0:0:68:2436:-215.78,-20.47,0	1/1:95:0,95:0:0:95:3393:-300.874,-28.5979,0	1/1:139:1,138:1:36:138:4956:-439.03,-38.6555,0	0/1:90:60,30:60:2126:30:1080:-68.4664,0,-132.808	0/1:59:27,32:27:949:32:1140:-83.7788,0,-55.1014	0/1:21:6,15:6:216:15:525:-40.5984,0,-10.4783	1/1:48:0,48:0:0:48:1704:-152.29,-14.4494,0	1/1:58:0,58:0:0:58:2088:-183.799,-17.4597,0	1/1:143:0,143:0:0:143:5104:-455.817,-43.0473,0	1/1:33:0,33:0:0:33:1176:-104.666,-9.93399,0	1/1:52:0,51:0:0:51:1832:-163.04,-15.3525,0	0/1:33:20,13:20:705:13:468:-31.2798,0,-45.8496	1/1:61:0,61:0:0:61:2181:-194.938,-18.3628,0	0/1:17:10,7:10:356:7:252:-17.593,0,-21.3668	0/1:38:19,19:19:680:19:680:-48.7636,0,-40.9582	1/1:30:0,30:0:0:30:1076:-95.3845,-9.0309,0	1/1:15:0,15:0:0:15:540:-48.0184,-4.51545,0	0/1:50:34,16:34:1224:16:576:-34.969,0,-80.5606	0/1:45:37,8:37:1309:8:288:-12.5288,0,-90.1066	1/1:110:0,109:0:0:109:3849:-343.91,-32.8123,0	1/1:63:0,63:0:0:63:2264:-201.806,-18.9649,0
chr04	15712402	.	C	T	35531.8	PASS	AB=0.443729;ABP=139.621;AC=45;AF=0.239362;AN=188;AO=2219;CIGAR=1X;DP=11145;DPB=11145;DPRA=0.997554;EPP=4821.51;EPPR=19370.4;GTI=6;LEN=1;MEANALT=1.07143;MQM=59.9833;MQMR=59.9907;NS=94;NUMALT=1;ODDS=0.911487;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79424;QR=318700;RO=8919;RPL=0;RPP=4821.51;RPPR=19370.4;RPR=2219;RUN=1;SAF=2219;SAP=4821.51;SAR=0;SRF=8919;SRP=19370.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:23,32:23:824:32:1144:-86.7129,0,-57.9267	0/0:191:190,1:190:6758:1:36:0,-53.8985,-604.697	0/0:222:222,0:222:7964:0:0:0,-66.8287,-716.779	0/0:372:372,0:372:13311:0:0:0,-111.983,-1197.77	0/0:41:39,2:39:1377:2:72:0,-5.50551,-117.39	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:95:62,33:62:2211:33:1172:-77.1896,0,-170.656	0/0:188:186,1:186:6644:1:36:0,-52.9792,-594.516	0/1:78:35,43:35:1224:43:1520:-113.613,0,-86.9833	0/0:197:197,0:197:7036:0:0:0,-59.3029,-633.304	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.286	0/0:113:112,0:112:3991:0:0:0,-33.7154,-359.021	0/0:91:91,0:91:3243:0:0:0,-27.3937,-292.092	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/1:67:33,34:33:1180:34:1216:-89.5776,0,-86.339	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.213	0/1:63:36,26:36:1284:26:936:-65.5358,0,-96.8398	0/1:53:31,22:31:1107:22:792:-55.6511,0,-83.9856	0/1:333:217,116:217:7730:116:4160:-274.339,0,-595.405	0/1:188:108,80:108:3860:80:2864:-201.404,0,-291.002	0/1:103:51,52:51:1828:52:1853:-136.042,0,-133.795	0/1:92:37,55:37:1316:55:1980:-150.78,0,-91.047	0/0:131:128,3:128:4576:3:108:0,-29.3598,-401.931	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:318:188,130:188:6728:130:4664:-324.193,0,-509.868	0/1:204:125,79:125:4467:79:2820:-192.629,0,-340.79	0/1:47:32,15:32:1144:15:540:-34.7881,0,-89.1211	0/1:313:177,136:177:6328:136:4849:-342.342,0,-475.39	0/1:99:50,49:50:1792:49:1756:-128.522,0,-131.761	0/0:138:138,0:138:4904:0:0:0,-41.5421,-441.513	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:7:6,1:6:212:1:32:-1.0921,0,-17.3176	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9275	0/0:253:253,0:253:9048:0:0:0,-76.1606,-814.296	0/0:186:185,1:185:6610:1:36:0,-52.3933,-591.382	0/1:84:48,36:48:1712:36:1292:-91.2972,0,-129.079	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:208:131,77:131:4664:77:2764:-186.387,0,-357.31	0/1:41:23,18:23:807:18:648:-46.3097,0,-60.6069	0/1:130:59,71:59:2116:71:2548:-190.436,0,-151.575	0/1:89:50,39:50:1791:39:1392:-98.7873,0,-134.19	0/0:102:101,1:101:3615:1:36:0,-27.1068,-321.957	0/1:85:39,46:39:1392:46:1644:-122.661,0,-99.9915	0/1:114:62,52:62:2209:52:1864:-133.722,0,-164.756	0/1:203:120,83:120:4300:83:2960:-205.525,0,-326.067	0/1:128:71,57:71:2548:57:2044:-145.57,0,-191.038	0/0:257:257,0:257:9174:0:0:0,-77.3647,-825.635	0/0:317:317,0:317:11307:0:0:0,-95.4265,-1017.52	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:180:180,0:180:6420:0:0:0,-54.1854,-577.888	0/1:32:18,14:18:644:14:504:-36.0651,0,-48.6576	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:206:123,83:123:4400:83:2972:-205.701,0,-334.161	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:8:6,2:6:208:2:72:-4.42848,0,-16.6508	0/1:70:35,35:35:1241:35:1256:-92.2732,0,-90.9204	0/0:120:120,0:120:4298:0:0:0,-36.1236,-386.995	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:230:151,78:151:5384:78:2796:-182.584,0,-415.398	0/0:270:269,1:269:9608:1:36:0,-77.6798,-861.079	0/1:104:54,50:54:1932:50:1773:-128.544,0,-142.849	0/0:126:125,1:125:4480:1:36:0,-34.3315,-399.771	0/1:194:95,99:95:3387:99:3554:-261.667,0,-246.646	0/1:149:44,105:44:1572:105:3764:-294.106,0,-96.9181	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/0:100:99,0:99:3564:0:0:0,-29.802,-320.606	0/0:110:108,1:108:3875:1:36:0,-29.5738,-345.344	0/1:39:28,11:28:1000:11:396:-24.2426,0,-78.5752	0/0:89:89,0:89:3172:0:0:0,-26.7917,-285.706	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.194	0/0:176:176,0:176:6280:0:0:0,-52.9813,-565.288	0/0:296:295,0:295:10561:0:0:0,-88.8038,-950.042	0/1:29:17,12:17:604:12:428:-30.1289,0,-45.9607	0/1:197:111,86:111:3976:86:3069:-217.134,0,-298.727	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:165:163,2:163:5827:2:72:0,-42.8332,-517.706	0/0:116:116,0:116:4148:0:0:0,-34.9195,-373.504	0/0:171:171,0:171:6128:0:0:0,-51.4761,-551.619	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.653	0/0:84:84,0:84:2963:0:0:0,-25.2865,-266.903	0/1:106:60,46:60:2143:46:1652:-117.059,0,-161.228	0/0:156:155,1:155:5559:1:36:0,-43.3624,-496.834	0/1:62:46,16:46:1648:16:576:-33.5111,0,-129.945	0/1:98:50,48:50:1779:48:1713:-124.909,0,-130.891	0/0:97:97,0:97:3466:0:0:0,-29.1999,-312.151	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:113:55,58:55:1963:58:2071:-152.644,0,-142.928	0/1:114:40,74:40:1432:74:2654:-204.789,0,-94.8602	0/0:170:170,0:170:6092:0:0:0,-51.1751,-548.381	0/0:128:128,0:128:4579:0:0:0,-38.5318,-412.275
chr04	15712470	.	C	T	67835.9	PASS	AB=0.54073;ABP=105.606;AC=47;AF=0.25;AN=188;AO=3868;CIGAR=1X;DP=14180;DPB=14180;DPRA=1.14829;EPP=8324.27;EPPR=22265.1;GTI=1;LEN=1;MEANALT=1.07018;MQM=59.9333;MQMR=59.7958;NS=94;NUMALT=1;ODDS=0.962782;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138629;QR=368574;RO=10304;RPL=9;RPP=8324.27;RPPR=22265.1;RPR=3859;RUN=1;SAF=0;SAP=8402.27;SAR=3868;SRF=0;SRP=22377.9;SRR=10304;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:20,29:20:720:29:1040:-79.1639,0,-50.376	0/0:241:241,0:241:8630:0:0:0,-72.5482,-776.643	0/0:175:174,1:174:6214:1:36:0,-49.082,-555.741	0/0:386:384,2:384:13732:2:72:0,-109.361,-1227.57	0/0:45:44,0:44:1580:0:0:0,-13.2453,-142.125	0/0:28:26,2:26:932:2:72:0,-1.59212,-77.3621	0/1:213:117,96:117:4196:96:3429:-244.703,0,-313.554	0/0:133:133,0:133:4767:0:0:0,-40.037,-429.155	0/1:174:73,101:73:2624:101:3612:-272.905,0,-184.028	0/0:190:189,1:189:6772:1:36:0,-53.5974,-605.932	0/0:74:74,0:74:2638:0:0:0,-22.2762,-237.657	0/0:99:99,0:99:3520:0:0:0,-29.802,-317.009	0/0:117:117,0:117:4168:0:0:0,-35.2205,-375.182	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.898	0/0:90:90,0:90:3206:0:0:0,-27.0927,-288.757	0/1:84:47,37:47:1671:37:1312:-93.0939,0,-125.39	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.034	0/1:97:41,56:41:1468:56:2008:-151.793,0,-103.212	0/1:74:34,40:34:1216:40:1438:-107.442,0,-87.4657	0/1:447:178,268:178:6379:268:9563:-725.876,0,-439.564	0/1:256:132,124:132:4721:124:4448:-323.426,0,-347.874	0/1:239:41,198:41:1468:198:7081:-565.4,0,-60.3969	0/1:134:77,57:77:2764:57:2048:-144.253,0,-208.652	0/1:233:203,30:203:7273:30:1071:-26.5616,0,-584.349	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.515	0/1:469:207,262:207:7397:262:9379:-702.876,0,-524.566	0/1:318:114,204:114:4084:204:7317:-562.847,0,-272.011	0/1:62:35,27:35:1252:27:972:-69.0418,0,-94.3082	0/1:503:218,285:218:7808:285:10218:-768.111,0,-549.865	0/1:127:60,67:60:2133:67:2404:-178.386,0,-153.988	0/0:235:235,0:235:8386:0:0:0,-70.742,-754.728	0/1:12:3,9:3:108:9:316:-25.1665,0,-6.46281	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.4338	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:313:311,0:311:11156:0:0:0,-93.6203,-1003.46	0/0:172:170,2:170:6087:2:72:0,-44.9404,-540.825	0/1:94:38,56:38:1355:56:1993:-151.3,0,-93.9221	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:266:134,131:134:4803:131:4704:-343.381,0,-352.269	0/1:52:30,22:30:1040:22:792:-55.9521,0,-78.2474	0/1:162:71,90:71:2521:90:3221:-241.274,0,-178.311	0/1:115:58,57:58:2049:57:2048:-149.971,0,-150.061	0/0:94:94,0:94:3384:0:0:0,-28.2968,-304.767	0/1:119:37,82:37:1323:82:2944:-229.371,0,-83.5487	0/1:245:97,148:97:3468:148:5311:-404.37,0,-238.571	0/1:312:146,166:146:5203:166:5948:-441.493,0,-374.476	0/1:208:65,143:65:2340:143:5127:-398.957,0,-148.242	0/0:214:214,0:214:7652:0:0:0,-64.4204,-688.703	0/0:224:224,0:224:7996:0:0:0,-67.4307,-719.618	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4111	0/0:363:363,0:363:13021:0:0:0,-109.274,-1170.95	0/1:46:23,23:23:824:23:828:-60.9967,0,-60.6326	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:276:127,149:127:4544:149:5360:-399.445,0,-326.04	0/0:112:112,0:112:4005:0:0:0,-33.7154,-360.555	0/1:16:13,3:13:468:3:104:-4.88633,0,-37.6432	0/1:30:12,18:12:432:18:644:-49.2515,0,-30.1869	0/1:108:79,29:79:2828:29:1036:-61.0421,0,-222.243	0/0:138:136,2:136:4869:2:72:0,-34.7054,-431.517	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:313:169,144:169:6076:144:5180:-372.111,0,-452.706	0/0:326:322,4:322:11496:4:144:0,-84.8222,-1021.07	0/1:50:34,16:34:1212:16:572:-36.7619,0,-94.3348	0/0:142:142,0:142:5075:0:0:0,-42.7463,-456.881	0/1:250:119,131:119:4261:131:4711:-348.845,0,-308.389	0/1:155:53,102:53:1884:102:3651:-282.13,0,-123.152	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:117:117,0:117:4181:0:0:0,-35.2205,-376.458	0/0:94:94,0:94:3367:0:0:0,-28.2968,-301.875	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/0:131:131,0:131:4665:0:0:0,-39.4349,-420.003	0/0:105:105,0:105:3745:0:0:0,-31.6081,-335.951	0/0:257:257,0:257:9154:0:0:0,-77.3647,-823.813	0/0:307:307,0:307:11012:0:0:0,-92.4162,-990.719	0/1:110:30,80:30:1080:80:2872:-225.603,0,-64.4	0/1:138:65,73:65:2327:73:2599:-192.538,0,-167.127	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:214:213,0:213:7627:0:0:0,-64.1194,-685.535	0/0:159:158,1:158:5636:1:36:0,-44.2655,-503.726	0/0:453:453,0:453:16229:0:0:0,-136.367,-1459.97	0/0:129:127,2:127:4555:2:72:0,-32.0047,-403.282	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.529	0/1:135:63,72:63:2264:72:2588:-192.527,0,-163.383	0/0:203:203,0:203:7247:0:0:0,-61.1091,-652.275	0/1:54:25,28:25:900:28:1008:-74.7219,0,-65.0066	0/1:102:50,52:50:1788:52:1872:-138.054,0,-130.498	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.876	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:94:50,44:50:1792:44:1584:-114.555,0,-133.263	0/1:115:42,73:42:1508:73:2624:-201.788,0,-101.396	0/0:236:235,1:235:8420:1:36:0,-67.4448,-754.199	0/0:126:126,0:126:4462:0:0:0,-37.9298,-401.664
chr04	15712488	.	T	A	217870	PASS	AB=0.470208;ABP=56.7047;AC=141;AF=0.75;AN=188;AO=10339;CIGAR=1X;DP=14056;DPB=14056;DPRA=0;EPP=22453.9;EPPR=8015.75;GTI=1;LEN=1;MEANALT=1.15957;MQM=59.7974;MQMR=59.9424;NS=94;NUMALT=1;ODDS=1.23887;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=370236;QR=130726;RO=3698;RPL=10339;RPP=22453.9;RPPR=8015.75;RPR=0;RUN=1;SAF=0;SAP=22453.9;SAR=10339;SRF=0;SRP=8033.12;SRR=3698;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:28,20:28:992:20:708:-49.5952,0,-75.145	1/1:237:0,236:0:0:236:8480:-762.745,-71.0431,0	1/1:173:1,172:1:36:172:6184:-553.04,-48.4799,0	1/1:389:2,385:2:72:385:13787:-1233.49,-110.022,0	1/1:45:0,45:0:0:45:1611:-145.272,-13.5464,0	1/1:28:2,26:2:72:26:919:-76.1894,-1.59212,0	0/1:200:85,114:85:3017:114:4070:-306.211,0,-211.496	1/1:132:0,132:0:0:132:4732:-426.007,-39.736,0	0/1:163:90,73:90:3193:73:2628:-187.699,0,-238.526	1/1:196:1,195:1:36:195:6953:-622.22,-55.4036,0	1/1:76:0,76:0:0:76:2732:-246.111,-22.8783,0	1/1:100:0,100:0:0:100:3569:-321.416,-30.103,0	1/1:118:0,118:0:0:118:4204:-378.433,-35.5215,0	1/1:88:0,88:0:0:88:3151:-283.811,-26.4906,0	1/1:88:0,87:0:0:87:3132:-281.742,-26.1896,0	0/1:83:37,46:37:1312:46:1647:-123.532,0,-93.3962	1/1:118:0,117:0:0:117:4197:-377.527,-35.2205,0	0/1:91:51,40:51:1812:40:1440:-102.5,0,-135.968	0/1:73:40,33:40:1436:33:1180:-84.5282,0,-107.562	0/1:438:260,177:260:9012:177:6352:-439.825,0,-679.031	0/1:259:122,137:122:4330:137:4878:-361.182,0,-311.909	0/1:234:192,42:192:6769:42:1493:-64.1451,0,-538.846	0/1:127:52,75:52:1814:75:2671:-202.394,0,-125.306	0/1:234:29,205:29:1028:205:7343:-589.722,0,-22.392	1/1:75:0,75:0:0:75:2672:-240.718,-22.5773,0	0/1:460:254,206:254:9018:206:7376:-525.386,0,-673.112	0/1:305:193,112:193:6824:112:4020:-270.167,0,-522.421	0/1:62:27,35:27:953:35:1245:-93.6786,0,-67.3272	0/1:501:280,221:280:9859:221:7924:-560.738,0,-736.434	0/1:127:67,60:67:2376:60:2152:-155.677,0,-175.868	1/1:235:0,235:0:0:235:8425:-758.236,-70.7421,0	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	1/1:9:0,9:0:0:9:315:-27.9787,-2.70927,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:316:0,315:0:0:315:11283:-1014.92,-94.8245,0	1/1:173:0,173:0:0:173:6192:-557.345,-52.0782,0	0/1:90:52,38:52:1868:38:1341:-93.8935,0,-141.307	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:262:126,135:126:4444:135:4841:-356.89,0,-321.197	0/1:52:21,31:21:737:31:1116:-85.0911,0,-50.9971	0/1:158:88,70:88:3064:70:2512:-178.764,0,-228.414	0/1:113:54,58:54:1928:58:2072:-152.673,0,-139.721	1/1:95:0,93:0:0:93:3332:-299.724,-27.9958,0	0/1:110:73,37:73:2597:37:1315:-85.5377,0,-200.864	0/1:238:134,104:134:4749:104:3723:-263.616,0,-355.927	0/1:306:161,145:161:5687:145:5182:-374.389,0,-419.835	0/1:203:140,63:140:4939:63:2264:-142.911,0,-383.554	1/1:213:0,213:0:0:213:7648:-687.783,-64.1194,0	1/1:228:0,228:0:0:228:8147:-733.202,-68.6348,0	1/1:17:0,17:0:0:17:612:-55.4111,-5.11751,0	1/1:364:0,364:0:0:364:13046:-1173.9,-109.575,0	0/1:45:21,24:21:748:24:856:-63.8114,0,-54.0989	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:273:144,129:144:5120:129:4620:-333.78,0,-378.766	1/1:110:0,110:0:0:110:3927:-353.543,-33.1133,0	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/1:28:17,11:17:612:11:396:-27.5505,0,-46.9764	0/1:109:29,80:29:1021:80:2872:-225.9,0,-59.388	1/1:144:2,142:2:72:142:5103:-452.566,-36.5116,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:312:141,171:141:5012:171:6129:-457.776,0,-357.307	1/1:326:5,321:5:176:321:11483:-1015.51,-81.9508,0	0/1:49:16,33:16:568:33:1188:-92.4781,0,-36.7014	1/1:140:0,140:0:0:140:5019:-451.841,-42.1442,0	0/1:249:126,123:126:4455:123:4412:-322.183,0,-326.108	0/1:148:97,51:97:3430:51:1832:-120.585,0,-264.36	1/1:34:0,34:0:0:34:1220:-110.037,-10.235,0	1/1:121:0,121:0:0:121:4340:-390.762,-36.4246,0	1/1:94:0,93:0:0:93:3344:-300.806,-27.9958,0	0/1:21:9,12:9:316:12:428:-32.5372,0,-22.4572	1/1:129:0,129:0:0:129:4581:-412.452,-38.8329,0	1/1:105:0,104:0:0:104:3716:-334.007,-31.3071,0	1/1:257:0,257:0:0:257:9169:-825.162,-77.3647,0	1/1:306:0,305:0:0:305:10951:-984.87,-91.8142,0	0/1:105:73,29:73:2585:29:1044:-63.2099,0,-201.831	0/1:129:66,63:66:2333:63:2260:-164.83,0,-171.197	0/1:14:3,11:3:108:11:387:-30.9515,0,-5.86075	1/1:208:0,208:0:0:208:7446:-670.106,-62.6142,0	1/1:164:0,164:0:0:164:5884:-529.632,-49.3689,0	1/1:452:0,451:0:0:451:16177:-1454.95,-135.765,0	1/1:129:1,128:1:32:128:4565:-407.806,-35.6336,0	1/1:110:0,110:0:0:110:3935:-354.2,-33.1133,0	0/1:136:72,64:72:2538:64:2304:-166.68,0,-187.727	1/1:205:1,204:1:36:204:7326:-655.78,-58.1129,0	0/1:50:27,23:27:968:23:828:-59.7926,0,-72.3859	0/1:99:49,50:49:1749:50:1800:-132.48,0,-127.89	1/1:113:0,113:0:0:113:4034:-363.248,-34.0164,0	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	0/1:94:43,51:43:1528:51:1836:-137.221,0,-109.516	0/1:110:68,42:68:2413:42:1508:-102.901,0,-184.312	1/1:243:0,243:0:0:243:8653:-778.751,-73.1503,0	1/1:129:0,129:0:0:129:4616:-415.391,-38.8329,0
chr04	15734436	.	T	G	46162.7	PASS	AB=0.52066;ABP=21.6727;AC=43;AF=0.231183;AN=186;AO=2639;CIGAR=1X;DP=11253;DPB=11253;DPRA=1.15073;EPP=5366.12;EPPR=17243.3;GTI=0;LEN=1;MEANALT=1.05882;MQM=59.997;MQMR=59.9928;NS=93;NUMALT=1;ODDS=4.50944;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93669;QR=308024;RO=8606;RPL=2596;RPP=5366.12;RPPR=17234.9;RPR=43;RUN=1;SAF=0;SAP=5733.53;SAR=2639;SRF=1;SRP=18682;SRR=8605;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:17,32:17:608:32:1135:-87.7076,0,-40.3016	0/0:263:260,3:260:9304:3:104:0,-69.4681,-827.624	0/0:127:127,0:127:4556:0:0:0,-38.2308,-410.205	0/0:186:185,1:185:6582:1:36:0,-52.3933,-588.864	0/0:80:75,5:75:2696:5:180:0,-7.53033,-226.332	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:82:41,41:41:1472:41:1442:-105.39,0,-108.092	0/0:193:192,0:192:6861:0:0:0,-57.7978,-617.199	0/1:80:42,38:42:1492:38:1342:-96.9962,0,-110.492	0/0:146:146,0:146:5201:0:0:0,-43.9504,-468.23	0/0:88:88,0:88:3155:0:0:0,-26.4906,-284.174	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/0:84:83,0:83:2969:0:0:0,-24.9855,-267.081	0/0:189:189,0:189:6760:0:0:0,-56.8947,-608.471	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:75:36,38:36:1292:38:1356:-99.7434,0,-93.9866	0/0:159:159,0:159:5684:0:0:0,-47.8638,-511.68	0/1:96:52,44:52:1860:44:1557:-111.522,0,-138.781	0/1:56:23,33:23:828:33:1169:-88.6576,0,-57.9864	0/1:340:189,151:189:6767:151:5371:-381.173,0,-506.752	0/1:209:81,128:81:2900:128:4562:-347.831,0,-198.321	0/1:80:24,56:24:864:56:2008:-156.911,0,-54.0002	0/1:34:14,20:14:500:20:699:-52.9974,0,-35.1012	0/0:90:88,2:88:3156:2:72:0,-20.256,-277.428	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:310:145,165:145:5188:165:5843:-432.667,0,-373.741	0/1:160:74,86:74:2660:86:3036:-225.306,0,-191.481	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:259:132,127:132:4732:127:4476:-325.046,0,-348.071	0/1:325:149,176:149:5329:176:6252:-464.944,0,-381.908	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:274:273,0:273:9812:0:0:0,-82.1812,-882.657	0/0:212:212,0:212:7573:0:0:0,-63.8184,-681.61	0/1:81:43,37:43:1548:37:1320:-94.6598,0,-115.171	.:.:.:.:.:.:.:.	0/1:149:77,72:77:2748:72:2563:-186.066,0,-202.709	0/1:45:14,31:14:495:31:1116:-87.2053,0,-31.3367	0/1:107:53,54:53:1908:54:1906:-139.606,0,-139.787	0/1:73:32,41:32:1144:41:1440:-107.918,0,-81.2943	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:86:34,52:34:1205:52:1838:-139.81,0,-82.8653	0/1:178:104,74:104:3712:74:2613:-181.834,0,-280.699	0/1:151:64,87:64:2285:87:3085:-232.423,0,-160.454	0/1:121:55,66:55:1976:66:2354:-175.693,0,-141.69	0/0:351:351,0:351:12539:0:0:0,-105.662,-1128.34	0/0:232:232,0:232:8300:0:0:0,-69.839,-747.01	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:131:130,0:130:4652:0:0:0,-39.1339,-418.483	0/1:48:22,26:22:792:26:923:-68.9373,0,-57.1562	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:224:111,112:111:3980:112:3992:-291.98,0,-290.9	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:32:18,14:18:640:14:500:-35.7032,0,-48.2964	0/1:78:30,48:30:1080:48:1712:-130.885,0,-74.0329	0/0:173:172,1:172:6147:1:36:0,-48.4799,-549.732	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:269:188,81:188:6709:81:2894:-179.718,0,-522.91	0/0:441:437,4:437:15618:4:144:0,-119.441,-1392	0/1:100:48,52:48:1724:52:1838:-135.597,0,-125.342	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:128:59,69:59:2120:69:2454:-182.581,0,-151.91	0/1:117:36,81:36:1296:81:2883:-224.486,0,-81.7234	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:145:145,0:145:5172:0:0:0,-43.6493,-465.62	0/1:27:16,11:16:572:11:396:-27.8549,0,-43.6856	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:173:173,0:173:6200:0:0:0,-52.0782,-558.096	0/0:197:196,1:196:7032:1:36:0,-55.7046,-629.342	0/1:134:55,79:55:1972:79:2801:-211.992,0,-137.417	0/1:189:74,115:74:2632:115:4089:-311.301,0,-180.233	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:162:162,0:162:5800:0:0:0,-48.7669,-522.114	0/0:95:94,1:94:3364:1:36:0,-24.9996,-299.378	0/0:271:271,0:271:9701:0:0:0,-81.5791,-873.033	0/0:130:130,0:130:4656:0:0:0,-39.1339,-419.202	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/1:129:56,73:56:2000:73:2580:-193.616,0,-141.441	0/0:219:219,0:219:7868:0:0:0,-65.9256,-708.143	0/1:43:20,23:20:712:23:815:-60.7265,0,-51.4624	0/1:113:55,58:55:1968:58:2070:-152.554,0,-143.379	0/0:97:96,0:96:3448:0:0:0,-28.8989,-310.172	0/0:58:58,0:58:2079:0:0:0,-17.4597,-187.38	0/1:137:71,66:71:2552:66:2312:-167.096,0,-188.689	0/1:89:38,51:38:1356:51:1815:-136.839,0,-95.5488	0/0:161:161,0:161:5756:0:0:0,-48.4658,-518.157	0/0:135:135,0:135:4844:0:0:0,-40.639,-436.113
chr04	15734768	.	C	T	219227	PASS	AB=0.481967;ABP=15.9323;AC=145;AF=0.771277;AN=188;AO=8035;CIGAR=1X;DP=10429;DPB=10429;DPRA=0;EPP=17450.8;EPPR=5188.49;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.8619;MQMR=59.9853;NS=94;NUMALT=1;ODDS=4.488;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287231;QR=84398;RO=2388;RPL=3731;RPP=91.7418;RPPR=37.943;RPR=4304;RUN=1;SAF=3731;SAP=91.7418;SAR=4304;SRF=1096;SRP=37.943;SRR=1292;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:26,30:26:927:30:1072:-79.9348,0,-66.8897	1/1:134:2,131:2:72:131:4716:-417.758,-33.5601,0	1/1:126:0,126:0:0:126:4478:-403.178,-37.9298,0	1/1:218:0,218:0:0:218:7787:-700.852,-65.6245,0	1/1:78:0,78:0:0:78:2766:-249.178,-23.4803,0	1/1:34:0,34:0:0:34:1195:-107.852,-10.235,0	0/1:104:59,45:59:2120:45:1616:-114.416,0,-159.761	1/1:221:0,221:0:0:221:7846:-706.169,-66.5276,0	0/1:128:64,63:64:2261:63:2252:-164.297,0,-165.161	1/1:108:0,108:0:0:108:3876:-349.031,-32.5112,0	1/1:94:0,94:0:0:94:3354:-302.074,-28.2968,0	1/1:164:0,164:0:0:164:5863:-527.747,-49.3689,0	1/1:165:0,165:0:0:165:5893:-530.462,-49.67,0	1/1:130:0,130:0:0:130:4631:-416.945,-39.1339,0	1/1:145:0,145:0:0:145:5183:-466.289,-43.6494,0	0/1:132:58,74:58:2032:74:2660:-199.908,0,-143.415	1/1:124:0,124:0:0:124:4435:-399.05,-37.3277,0	0/1:98:48,50:48:1678:50:1792:-132.062,0,-121.802	0/1:88:47,41:47:1648:41:1467:-105.834,0,-122.114	0/1:140:64,76:64:2284:76:2728:-203.618,0,-163.678	0/1:168:88,80:88:3111:80:2868:-207.784,0,-229.644	0/1:29:17,12:17:600:12:423:-29.6752,0,-45.5993	0/1:88:46,42:46:1640:42:1504:-109.164,0,-121.398	1/1:105:9,96:9:309:96:3435:-281.222,-3.46751,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:328:159,169:159:5624:169:6065:-447.204,0,-407.547	0/1:222:103,118:103:3614:118:4231:-314.079,0,-258.576	1/1:68:0,68:0:0:68:2436:-219.493,-20.47,0	0/1:181:98,83:98:3472:83:2954:-211.581,0,-257.978	0/1:83:48,35:48:1689:35:1247:-87.5404,0,-127.306	1/1:123:0,123:0:0:123:4403:-395.815,-37.0267,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:14:12,2:12:428:2:72:-2.61746,0,-34.6444	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:350:0,349:0:0:349:12492:-1123.32,-105.059,0	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	0/1:102:44,58:44:1508:58:2076:-156.405,0,-105.299	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:149:72,76:72:2550:76:2724:-200.489,0,-184.838	0/1:68:33,35:33:1165:35:1246:-91.9296,0,-84.685	0/1:161:87,74:87:3062:74:2652:-190.456,0,-227.34	0/1:145:64,81:64:2270:81:2889:-216.588,0,-160.912	1/1:108:0,108:0:0:108:3880:-349.386,-32.5112,0	0/1:101:56,45:56:1986:45:1603:-114.109,0,-148.609	0/1:113:64,49:64:2260:49:1745:-123.186,0,-169.645	0/1:188:74,114:74:2597:114:4074:-310.253,0,-177.383	0/1:64:38,26:38:1364:26:936:-65.2935,0,-103.795	1/1:151:2,149:2:72:149:5339:-473.787,-38.6188,0	1/1:98:0,98:0:0:98:3493:-314.571,-29.5009,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:117:0,117:0:0:117:4181:-376.466,-35.2205,0	0/1:50:26,24:26:924:24:860:-62.6694,0,-68.4262	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	0/1:123:58,65:58:2059:65:2317:-171.632,0,-148.554	1/1:49:0,49:0:0:49:1747:-157.514,-14.7505,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:86:35,51:35:1251:51:1832:-139.261,0,-87.0057	1/1:162:2,160:2:59:160:5740:-511.085,-43.1627,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:121:73,48:73:2582:48:1694:-116.318,0,-196.202	1/1:190:1,189:1:36:189:6737:-602.793,-53.5974,0	0/1:77:33,44:33:1141:44:1580:-119.295,0,-79.8113	1/1:58:0,58:0:0:58:2067:-186.297,-17.4597,0	0/1:187:96,91:96:3372:91:3234:-234.969,0,-247.404	0/1:107:74,33:74:2612:33:1180:-74.2955,0,-203.117	1/1:65:0,64:0:0:64:2269:-204.097,-19.2659,0	1/1:91:2,89:2:72:89:3172:-278.864,-20.557,0	1/1:125:0,125:0:0:125:4480:-403.367,-37.6288,0	0/1:16:8,8:8:284:8:284:-21.0869,0,-21.0869	1/1:94:1,93:1:32:93:3336:-297.253,-25.0975,0	1/1:90:0,90:0:0:90:3197:-287.881,-27.0927,0	1/1:195:1,194:1:36:194:6943:-621.325,-55.1026,0	1/1:162:0,162:0:0:162:5773:-519.667,-48.7669,0	0/1:89:55,34:55:1938:34:1202:-81.6926,0,-147.903	0/1:147:81,66:81:2873:66:2338:-166.425,0,-214.553	0/1:9:5,4:5:167:4:144:-10.6043,0,-12.6491	1/1:133:1,132:1:36:132:4740:-423.151,-36.4387,0	1/1:94:0,94:0:0:94:3354:-301.702,-28.2968,0	1/1:190:0,190:0:0:190:6797:-611.79,-57.1957,0	1/1:160:0,160:0:0:160:5728:-515.593,-48.1648,0	1/1:139:0,139:0:0:139:4987:-448.863,-41.8432,0	0/1:132:68,64:68:2407:64:2266:-164.463,0,-177.151	1/1:253:0,253:0:0:253:9042:-813.714,-76.1606,0	0/1:71:32,39:32:1114:39:1396:-104.565,0,-79.1926	0/1:117:68,49:68:2412:49:1756:-123.046,0,-182.114	1/1:125:0,125:0:0:125:4488:-404.084,-37.6288,0	1/1:77:0,77:0:0:77:2764:-248.982,-23.1793,0	0/1:110:54,56:54:1928:56:2012:-148.238,0,-140.683	0/1:160:116,44:116:4144:44:1584:-94.6867,0,-324.98	1/1:110:0,110:0:0:110:3938:-354.582,-33.1133,0	1/1:231:0,231:0:0:231:8252:-742.68,-69.5379,0
chr04	15739994	.	A	G	47180.4	PASS	AB=0.522732;ABP=26.6049;AC=43;AF=0.228723;AN=188;AO=2775;CIGAR=1X;DP=10721;DPB=10721;DPRA=1.26867;EPP=6020.16;EPPR=17246.7;GTI=1;LEN=1;MEANALT=1.0566;MQM=59.9643;MQMR=59.9904;NS=94;NUMALT=1;ODDS=3.8085;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99256;QR=284333;RO=7941;RPL=2775;RPP=6028.85;RPPR=17246.7;RPR=0;RUN=1;SAF=1;SAP=6020.16;SAR=2774;SRF=0;SRP=17246.7;SRR=7941;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:21,19:21:756:19:684:-49.8491,0,-56.326	0/0:253:253,0:253:9038:0:0:0,-76.1606,-813.397	0/0:141:141,0:141:5040:0:0:0,-42.4452,-453.744	0/0:185:185,0:185:6617:0:0:0,-55.6905,-595.608	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/1:93:54,39:54:1932:39:1400:-98.3034,0,-146.161	0/0:278:275,3:275:9840:3:108:0,-73.6112,-875.461	0/1:65:22,43:22:775:43:1519:-117.419,0,-50.5042	0/0:170:170,0:170:6100:0:0:0,-51.1751,-549.099	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.359	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:87:86,1:86:3088:1:36:0,-22.5913,-274.549	0/0:59:58,1:58:2088:1:36:0,-14.1625,-184.592	0/1:62:31,31:31:1101:31:1112:-81.7275,0,-80.7345	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:68:30,38:30:1080:38:1355:-101.78,0,-77.0432	0/1:64:32,32:32:1135:32:1148:-84.3639,0,-83.1921	0/1:378:181,197:181:6492:197:7051:-520.86,0,-470.574	0/1:176:94,82:94:3372:82:2927:-210.683,0,-250.714	0/1:154:60,94:60:2156:94:3360:-256.258,0,-147.948	0/1:54:25,29:25:888:29:1029:-76.6655,0,-63.9834	0/0:145:132,13:132:4710:13:468:0,-1.1897,-381.598	0/0:99:97,2:97:3457:2:72:0,-22.9652,-304.505	0/1:410:181,229:181:6481:229:8178:-612.61,0,-459.906	0/1:240:112,128:112:4008:128:4588:-340.837,0,-288.662	0/0:49:48,1:48:1724:1:36:0,-11.1522,-151.847	0/1:263:137,126:137:4885:126:4512:-327.077,0,-360.632	0/1:242:133,108:133:4750:108:3876:-276.103,0,-354.747	0/0:82:81,0:81:2916:0:0:0,-24.3834,-262.314	0/1:15:11,4:11:388:4:144:-8.79817,0,-30.7419	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:226:226,0:226:8100:0:0:0,-68.0328,-729.015	0/0:208:207,1:207:7378:1:36:0,-59.016,-660.47	0/1:102:46,56:46:1641:56:2012:-150.642,0,-117.272	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:183:89,93:89:3188:93:3321:-244.108,0,-232.144	0/1:37:19,18:19:672:18:644:-47.1525,0,-49.6687	0/1:160:65,95:65:2316:95:3412:-259.129,0,-160.49	0/1:76:31,45:31:1112:45:1616:-122.848,0,-77.5131	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/1:113:60,53:60:2156:53:1900:-137.262,0,-160.291	0/1:149:70,79:70:2486:79:2815:-208.721,0,-179.137	0/1:89:49,40:49:1760:40:1424:-101.666,0,-131.892	0/1:155:83,71:83:2964:71:2533:-181.649,0,-220.423	0/0:174:174,0:174:6232:0:0:0,-52.3792,-560.964	0/0:196:196,0:196:7036:0:0:0,-59.0019,-633.297	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:147:144,3:144:5164:3:108:0,-34.1762,-454.824	0/1:61:24,37:24:864:37:1324:-101.099,0,-59.7197	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:127:67,60:67:2404:60:2146:-155.177,0,-178.386	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:16:8,8:8:288:8:269:-19.7196,0,-21.4509	0/1:36:21,15:21:752:15:532:-37.376,0,-57.1692	0/1:97:52,45:52:1864:45:1608:-115.81,0,-138.84	0/0:112:111,0:111:3962:0:0:0,-33.4143,-356.411	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:223:132,91:132:4728:91:3256:-226.131,0,-358.549	0/0:231:231,0:231:8280:0:0:0,-69.5379,-745.206	0/1:85:36,49:36:1292:49:1745:-131.741,0,-90.9962	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.016	0/1:206:101,105:101:3612:105:3768:-277.306,0,-263.274	0/1:183:49,134:49:1756:134:4804:-377.426,0,-103.236	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:121:121,0:121:4318:0:0:0,-36.4246,-388.794	0/0:85:85,0:85:3042:0:0:0,-25.5875,-274.008	0/1:29:18,11:18:644:11:388:-26.5275,0,-49.5607	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.889	0/0:118:118,0:118:4228:0:0:0,-35.5215,-380.7	0/0:226:225,1:225:8076:1:36:0,-64.4345,-723.257	0/1:136:58,78:58:2088:78:2775:-209.051,0,-147.25	0/1:180:83,97:83:2961:97:3476:-258.866,0,-212.537	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/0:165:165,0:165:5913:0:0:0,-49.6699,-532.276	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.451	0/0:210:210,0:210:7548:0:0:0,-63.2163,-679.356	0/0:137:137,0:137:4915:0:0:0,-41.2411,-442.499	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:113:55,58:55:1972:58:2066:-152.192,0,-143.738	0/0:158:158,0:158:5654:0:0:0,-47.5627,-508.977	0/1:48:18,30:18:648:30:1080:-83.0638,0,-44.2024	0/1:98:50,48:50:1788:48:1724:-125.944,0,-131.702	0/0:74:74,0:74:2637:0:0:0,-22.2762,-237.576	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/1:106:53,53:53:1908:53:1895:-138.912,0,-140.088	0/1:89:23,66:23:824:66:2364:-186.227,0,-47.6916	0/0:105:104,1:104:3732:1:36:0,-28.0099,-332.482	0/0:100:100,0:100:3583:0:0:0,-30.103,-322.676
chr04	15913630	.	C	G	21962.8	PASS	AB=0.477954;ABP=14.9783;AC=44;AF=0.234043;AN=188;AO=1361;CIGAR=1X;DP=5966;DPB=5966;DPRA=1.08492;EPP=2958.38;EPPR=9993.96;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=59.9991;NS=94;NUMALT=1;ODDS=2.65638;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48286;QR=163825;RO=4605;RPL=0;RPP=2958.38;RPPR=9993.96;RPR=1361;RUN=1;SAF=0;SAP=2958.38;SAR=1361;SRF=2;SRP=9985.28;SRR=4603;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:13,26:13:459:26:928:-72.0981,0,-29.9039	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.665	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:147:147,0:147:5236:0:0:0,-44.2514,-471.378	0/0:67:65,2:65:2313:2:72:0,-13.3323,-201.592	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/1:26:17,9:17:593:9:315:-20.8604,0,-45.8679	0/0:105:105,0:105:3749:0:0:0,-31.6081,-337.609	0/1:66:40,26:40:1424:26:924:-63.6097,0,-108.589	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/0:55:54,1:54:1923:1:36:0,-12.9584,-169.748	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:80:40,40:40:1432:40:1424:-104.375,0,-105.095	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:32:9,23:9:324:23:820:-64.4896,0,-19.8729	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/1:129:81,48:81:2885:48:1658:-110.668,0,-221.053	0/1:98:54,44:54:1920:44:1580:-112.991,0,-143.576	0/1:83:31,52:31:1098:52:1851:-141.884,0,-74.1431	0/1:91:41,50:41:1442:50:1741:-129.578,0,-102.678	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:125:57,68:57:1993:68:2394:-178.084,0,-142.011	0/1:156:83,73:83:2963:73:2592:-186.567,0,-219.942	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:169:106,63:106:3784:63:2243:-151.259,0,-289.886	0/1:80:40,40:40:1410:40:1425:-104.464,0,-103.111	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:127:127,0:127:4536:0:0:0,-38.2308,-408.408	0/0:144:144,0:144:5121:0:0:0,-43.3483,-461.035	0/1:24:9,15:9:324:15:527:-40.5355,0,-22.2811	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:80:46,34:46:1640:34:1224:-86.3846,0,-123.806	0/1:24:10,14:10:360:14:496:-37.7495,0,-25.5196	0/1:104:57,47:57:2029:47:1668:-119.098,0,-151.574	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/0:40:40,0:40:1419:0:0:0,-12.0412,-128.007	0/1:75:32,43:32:1139:43:1544:-116.676,0,-80.2411	0/1:77:47,30:47:1680:30:1049:-71.5375,0,-128.308	0/1:70:40,30:40:1432:30:1058:-74.4575,0,-108.105	0/1:66:33,33:33:1169:33:1176:-86.2798,0,-85.6472	0/0:75:74,1:74:2644:1:36:0,-18.979,-234.609	0/0:128:128,0:128:4534:0:0:0,-38.5318,-408.228	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:99:99,0:99:3525:0:0:0,-29.802,-317.459	0/1:37:24,13:24:834:13:458:-30.4153,0,-64.235	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/1:91:57,34:57:2028:34:1211:-81.9018,0,-155.396	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:73:39,34:39:1379:34:1216:-87.7714,0,-102.433	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:82:46,36:46:1652:36:1273:-90.1865,0,-124.284	0/0:118:117,1:117:4140:1:36:0,-31.9233,-369.188	0/1:55:41,14:41:1451:14:489:-27.7822,0,-114.329	0/0:71:71,0:71:2530:0:0:0,-21.3731,-227.951	0/1:126:74,52:74:2640:52:1856:-129.389,0,-199.918	0/1:186:74,112:74:2632:112:3956:-300.24,0,-181.134	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4891	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/1:8:3,5:3:108:5:171:-13.3172,0,-7.66693	0/0:132:132,0:132:4689:0:0:0,-39.736,-422.17	0/1:48:24,24:24:856:24:860:-63.2724,0,-62.9117	0/0:95:95,0:95:3374:0:0:0,-28.5978,-303.874	0/0:110:110,0:110:3891:0:0:0,-33.1133,-350.383	0/1:101:46,55:46:1635:55:1955:-145.821,0,-117.034	0/1:39:26,13:26:912:13:464:-30.3573,0,-70.6557	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:81:80,1:80:2837:1:36:0,-20.7852,-251.97	0/0:86:86,0:86:3039:0:0:0,-25.8886,-273.737	0/0:137:137,0:137:4824:0:0:0,-41.2411,-434.316	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.282	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:48:20,28:20:708:28:992:-75.145,0,-49.5962	0/0:39:39,0:39:1351:0:0:0,-11.7402,-121.882	0/0:27:27,0:27:948:0:0:0,-8.12781,-85.6319	0/1:87:43,44:43:1529:44:1568:-115.222,0,-111.711	0/1:36:10,26:10:360:26:924:-72.6406,0,-21.9072	0/0:104:104,0:104:3696:0:0:0,-31.3071,-332.842	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.282
chr04	15930672	.	G	T,A	35803.1	PASS	AB=0.516379,0.483621;ABP=5.71341,5.71341;AC=145,41;AF=0.77957,0.22043;AN=186;AO=2494,584;CIGAR=1X,1X;DP=3080;DPB=3080;DPRA=5.56884,0.930376;EPP=5418.66,1271.15;EPPR=0;GTI=6;LEN=1,1;MEANALT=1.52174,1.97872;MQM=24.751,24.9777;MQMR=0;NS=93;NUMALT=2;ODDS=0.995257;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=89396,20869;QR=0;RO=0;RPL=2494,584;RPP=5418.66,1271.15;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=5418.66,1271.15;SAR=2494,584;SRF=0;SRP=0;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:11:0,5,6:0:0:5,6:176,216:-20.3902,-11.2482,-9.74309,-9.37888,0,-7.5727	1/1:13:0,13,0:0:0:13,0:464,0:-27.6252,-3.91339,0,-27.6252,-3.91339,-27.6252	1/1:26:0,26,0:0:0:26,0:936,0:-55.5711,-7.82678,0,-55.5711,-7.82678,-55.5711	1/1:26:0,26,0:0:0:26,0:913,0:-57.0566,-7.82678,0,-57.0566,-7.82678,-57.0566	1/1:11:0,10,1:0:0:10,1:360,36:-23.0284,-3.0103,0,-21.0266,-0.752624,-20.7255	.:.:.:.:.:.:.:.	2/2:6:0,0,6:0:0:0,6:0,216:-13.568,-13.568,-13.568,-1.80618,-1.80618,0	1/1:20:0,20,0:0:0:20,0:716,0:-42.3304,-6.0206,0,-42.3304,-6.0206,-42.3304	1/2:31:0,26,5:0:0:26,5:928,180:-55.5817,-8.5262,-0.699423,-47.2762,0,-45.7711	1/1:22:0,22,0:0:0:22,0:792,0:-49.1745,-6.62266,0,-49.1745,-6.62266,-49.1745	1/1:64:0,64,0:0:0:64,0:2304,0:-141.907,-19.2659,0,-141.907,-19.2659,-141.907	1/1:50:0,50,0:0:0:50,0:1800,0:-106.002,-15.0515,0,-106.002,-15.0515,-106.002	1/1:43:0,43,0:0:0:43,0:1544,0:-91.6245,-12.9443,0,-91.6245,-12.9443,-91.6245	1/1:42:0,42,0:0:0:42,0:1508,0:-95.8965,-12.6433,0,-95.8965,-12.6433,-95.8965	1/1:33:0,33,0:0:0:33,0:1180,0:-73.8332,-9.93399,0,-73.8332,-9.93399,-73.8332	1/2:24:0,10,14:0:0:10,14:360,504:-48.2131,-28.3627,-25.3524,-20.1054,0,-15.891	1/1:18:0,18,0:0:0:18,0:648,0:-38.7731,-5.41854,0,-38.7731,-5.41854,-38.7731	1/2:22:0,8,14:0:0:8,14:288,504:-40.7795,-26.0988,-23.6906,-14.9185,0,-10.7041	1/2:33:0,25,8:0:0:25,8:899,288:-60.4443,-14.9185,-7.39278,-45.7628,0,-43.3545	1/2:14:0,9,5:0:0:9,5:324,176:-27.0738,-9.80058,-7.09131,-17.5194,0,-16.0142	1/2:41:0,17,24:0:0:17,24:604,856:-81.1886,-47.6835,-42.566,-33.7578,0,-26.533	1/1:1:0,1,0:0:0:1,0:36,0:-2.46691,-0.30103,0,-2.46691,-0.30103,-2.46691	1/2:4:0,2,2:0:0:2,2:72,72:-7.57163,-4.08506,-3.483,-3.72376,0,-3.1217	1/1:5:0,5,0:0:0:5,0:180,0:-11.77,-1.50515,0,-11.77,-1.50515,-11.77	1/1:15:0,15,0:0:0:15,0:540,0:-34.3704,-4.51545,0,-34.3704,-4.51545,-34.3704	1/2:47:0,24,23:0:0:24,23:864,813:-89.213,-43.5815,-36.3567,-45.8753,0,-38.9516	1/2:30:0,20,10:0:0:20,10:720,360:-59.7163,-20.2739,-14.2533,-39.6971,0,-36.6868	1/1:12:0,12,0:0:0:12,0:432,0:-27.2929,-3.61236,0,-27.2929,-3.61236,-27.2929	1/2:33:0,6,27:0:0:6,27:201,968:-63.0767,-52.0234,-50.2172,-11.293,0,-3.16515	1/2:16:0,7,9:0:0:7,9:248,324:-31.8392,-18.2721,-16.1649,-13.819,0,-11.1097	1/1:27:0,27,0:0:0:27,0:972,0:-60.2755,-8.12781,0,-60.2755,-8.12781,-60.2755	1/2:51:0,27,24:0:0:27,24:972,856:-101.062,-48.1983,-40.0705,-53.1166,0,-45.8919	1/2:29:0,17,12:0:0:17,12:608,428:-57.8966,-23.9143,-18.7968,-34.236,0,-30.6237	1/1:48:0,47,0:0:0:47,0:1665,0:-98.8535,-14.1484,0,-98.8535,-14.1484,-98.8535	1/1:119:0,118,0:0:0:118,0:4210,0:-249.289,-35.5215,0,-249.289,-35.5215,-249.289	1/1:167:0,165,2:0:0:165,2:5904,72:-349.797,-49.67,0,-346.126,-45.7623,-345.524	1/1:68:0,68,0:0:0:68,0:2444,0:-152.055,-20.47,0,-152.055,-20.47,-152.055	1/1:36:0,36,0:0:0:36,0:1296,0:-82.894,-10.8371,0,-82.894,-10.8371,-82.894	1/2:29:0,18,11:0:0:18,11:633,387:-52.4786,-19.763,-14.3445,-32.9481,0,-29.6368	1/2:14:0,3,11:0:0:3,11:104,396:-28.2305,-22.2757,-21.3726,-6.2092,0,-2.89787	1/2:11:0,3,8:0:0:3,8:108,288:-21.8465,-16.2703,-15.3672,-5.82064,0,-3.4124	1/2:18:0,12,6:0:0:12,6:432,208:-35.6735,-12.1644,-8.55203,-23.7621,0,-21.956	1/2:22:0,10,12:0:0:10,12:360,432:-43.4415,-24.2775,-21.2672,-19.4147,0,-15.8023	1/2:21:0,12,9:0:0:12,9:432,324:-40.5496,-17.5194,-13.907,-23.2769,0,-20.5676	1/1:21:0,21,0:0:0:21,0:745,0:-46.7372,-6.32163,0,-46.7372,-6.32163,-46.7372	1/2:40:0,17,23:0:0:17,23:612,828:-76.7537,-44.044,-38.9265,-32.956,0,-26.0323	1/2:12:0,7,5:0:0:7,5:252,165:-21.8514,-9.00018,-6.89297,-13.0834,0,-11.5782	1/1:29:0,26,3:0:0:26,3:929,108:-56.9053,-7.82678,0,-51.1474,-1.82253,-50.2443	1/2:17:0,5,12:0:0:5,12:180,432:-32.956,-23.3603,-21.8551,-9.84262,0,-6.23026	1/1:21:0,21,0:0:0:21,0:756,0:-47.2848,-6.32163,0,-47.2848,-6.32163,-47.2848	1/1:22:0,22,0:0:0:22,0:784,0:-48.9243,-6.62266,0,-48.9243,-6.62266,-48.9243	1/1:56:0,56,0:0:0:56,0:2000,0:-123.822,-16.8577,0,-123.822,-16.8577,-123.822	1/1:22:0,22,0:0:0:22,0:788,0:-47.1996,-6.62266,0,-47.1996,-6.62266,-47.1996	1/2:7:0,3,4:0:0:3,4:108,144:-13.681,-7.92343,-7.02034,-6.00425,0,-4.80013	1/1:73:0,73,0:0:0:73,0:2628,0:-157.903,-21.9752,0,-157.903,-21.9752,-157.903	1/2:26:0,17,9:0:0:17,9:612,311:-52.0607,-18.028,-12.9105,-34.2866,0,-31.5773	1/1:5:0,5,0:0:0:5,0:180,0:-11.3478,-1.50515,0,-11.3478,-1.50515,-11.3478	1/1:22:0,22,0:0:0:22,0:792,0:-48.1467,-6.62266,0,-48.1467,-6.62266,-48.1467	1/2:114:0,67,47:0:0:67,47:2393,1669:-218.218,-89.5614,-69.3924,-128.903,0,-114.754	1/1:16:0,15,1:0:0:15,1:536,36:-34.492,-4.51545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chr04	15997839	.	A	G	130296	PASS	AB=0.496488;ABP=3.4374;AC=141;AF=0.758065;AN=186;AO=6222;CIGAR=1X;DP=8241;DPB=8241;DPRA=22.3832;EPP=13513.9;EPPR=4385.04;GTI=1;LEN=1;MEANALT=1.01087;MQM=53.1633;MQMR=59.9291;NS=93;NUMALT=1;ODDS=2.07159;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222041;QR=71602;RO=2018;RPL=0;RPP=13513.9;RPPR=4385.04;RPR=6222;RUN=1;SAF=6222;SAP=13513.9;SAR=0;SRF=2018;SRP=4385.04;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:33,28:33:1168:28:989:-70.524,0,-87.0644	1/1:142:1,141:1:36:141:5037:-446.73,-39.148,0	1/1:68:0,68:0:0:68:2427:-217.592,-20.47,0	1/1:197:1,196:1:36:196:7005:-625.683,-55.7046,0	1/1:65:0,65:0:0:65:2317:-207.881,-19.567,0	1/1:74:0,74:0:0:74:2656:-237.845,-22.2762,0	0/1:157:65,92:65:2309:92:3274:-247.315,0,-160.79	1/1:172:0,171:0:0:171:6071:-542.956,-51.4761,0	0/1:109:39,70:39:1380:70:2501:-191.591,0,-91.6727	1/1:101:0,101:0:0:101:3620:-325.682,-30.404,0	1/1:51:0,51:0:0:51:1828:-164.611,-15.3525,0	1/1:78:0,78:0:0:78:2800:-251.079,-23.4803,0	1/1:85:0,85:0:0:85:3022:-271.009,-25.5876,0	1/1:67:0,67:0:0:67:2404:-216.057,-20.169,0	1/1:64:0,64:0:0:64:2296:-206.588,-19.2659,0	0/1:51:26,25:26:924:25:892:-64.8388,0,-68.1251	1/1:66:0,66:0:0:66:2365:-210.206,-19.868,0	0/1:78:41,37:41:1468:37:1328:-94.6059,0,-108.936	0/1:38:17,21:17:612:21:756:-56.6901,0,-43.918	0/1:168:75,93:75:2668:93:3321:-247.504,0,-189.794	0/1:97:57,40:57:1975:40:1436:-100.088,0,-148.818	0/1:57:41,16:41:1433:16:576:-34.9009,0,-112.105	0/1:61:32,29:32:1125:29:1040:-75.3489,0,-83.1932	1/1:143:4,139:4:125:139:4889:-426.387,-31.4887,0	1/1:43:0,43:0:0:43:1548:-139.347,-12.9443,0	0/1:284:154,130:154:5474:130:4661:-333.893,0,-407.263	0/1:122:61,61:61:2169:61:2143:-155.874,0,-158.749	1/1:46:0,46:0:0:46:1644:-147.929,-13.8474,0	0/1:222:102,120:102:3605:120:4254:-315.284,0,-257.83	0/1:115:53,62:53:1896:62:2228:-164.036,0,-136.3	1/1:132:0,132:0:0:132:4721:-424.199,-39.736,0	0/1:4:3,1:3:108:1:36:-2.3873,0,-8.87105	0/1:12:4,8:4:144:8:288:-22.543,0,-9.70126	1/1:4:0,4:0:0:4:144:-13.27,-1.20412,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.81432,-0.60206,0	1/1:190:0,190:0:0:190:6800:-611.24,-57.1957,0	1/1:135:1,134:1:36:134:4762:-423.073,-37.0408,0	0/1:81:47,34:47:1680:34:1220:-85.1576,0,-127.081	1/1:1:0,1:0:0:1:36:-3.59142,-0.30103,0	0/1:149:89,60:89:3149:60:2118:-144.903,0,-238.783	0/1:45:17,28:17:612:28:1008:-76.6132,0,-41.8671	0/1:136:64,72:64:2242:72:2562:-189.01,0,-161.101	0/1:89:51,38:51:1824:38:1368:-95.801,0,-137.649	1/1:89:0,89:0:0:89:3188:-286.438,-26.7917,0	0/1:137:63,74:63:2229:74:2610:-193.551,0,-159.473	0/1:109:61,48:61:2180:48:1707:-120.442,0,-163.64	0/1:126:69,57:69:2476:57:2032:-144.968,0,-185.135	0/1:135:67,68:67:2358:68:2409:-176.118,0,-171.837	1/1:83:0,83:0:0:83:2965:-266.381,-24.9855,0	1/1:106:0,106:0:0:106:3781:-339.897,-31.9092,0	1/1:8:0,8:0:0:8:288:-26.2259,-2.40824,0	1/1:121:0,121:0:0:121:4340:-389.128,-36.4246,0	0/1:70:38,32:38:1352:32:1124:-80.2203,0,-100.908	1/1:20:0,20:0:0:20:716:-64.3219,-6.0206,0	0/1:84:41,43:41:1437:43:1544:-113.676,0,-104.337	1/1:47:0,47:0:0:47:1661:-149.624,-14.1484,0	0/1:4:1,3:1:36:3:108:-8.86626,0,-2.39415	0/1:15:4,11:4:144:11:377:-29.4269,0,-8.79817	0/1:47:16,31:16:576:31:1085:-83.5623,0,-38.0266	1/1:112:0,112:0:0:112:4020:-361.39,-33.7154,0	1/1:2:0,2:0:0:2:68:-6.45278,-0.60206,0	0/1:192:94,98:94:3315:98:3504:-257.258,0,-240.769	1/1:93:0,93:0:0:93:3340:-300.087,-27.9958,0	0/1:55:23,32:23:812:32:1133:-85.4203,0,-56.8443	1/1:75:0,75:0:0:75:2685:-241.501,-22.5773,0	0/1:139:69,70:69:2456:70:2490:-181.659,0,-179.452	0/1:85:56,29:56:1992:29:1040:-68.0716,0,-153.967	1/1:15:0,15:0:0:15:536:-48.4009,-4.51545,0	1/1:39:0,39:0:0:39:1400:-125.457,-11.7402,0	1/1:89:0,89:0:0:89:3177:-285.485,-26.7917,0	0/1:33:13,20:13:460:20:714:-54.4314,0,-31.8014	1/1:77:0,77:0:0:77:2745:-244.127,-23.1793,0	0/1:68:36,32:36:1276:32:1137:-81.6511,0,-94.6687	1/1:156:0,156:0:0:156:5510:-494.556,-46.9607,0	1/1:150:0,150:0:0:150:5376:-482.303,-45.1545,0	0/1:120:57,63:57:2008:63:2245:-164.87,0,-144.868	0/1:58:36,22:36:1277:22:792:-53.9113,0,-97.7668	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:89:0,89:0:0:89:3177:-285.109,-26.7917,0	1/1:85:0,85:0:0:85:3011:-269.004,-25.5876,0	1/1:234:0,234:0:0:234:8373:-751.278,-70.441,0	1/1:120:0,120:0:0:120:4285:-384.094,-36.1236,0	1/1:72:0,72:0:0:72:2584:-232.382,-21.6742,0	0/1:78:42,36:42:1496:36:1292:-92.7622,0,-111.454	1/1:135:0,135:0:0:135:4829:-434.05,-40.6391,0	0/1:49:23,26:23:828:26:920:-67.8634,0,-60.0936	0/1:81:39,42:39:1396:42:1512:-111.108,0,-101.548	1/1:82:0,82:0:0:82:2936:-262.777,-24.6845,0	1/1:44:0,44:0:0:44:1570:-141.135,-13.2453,0	0/1:107:51,56:51:1832:56:2007:-147.718,0,-132.951	0/1:58:37,21:37:1324:21:752:-50.4678,0,-102.002	1/1:104:0,104:0:0:104:3702:-332.789,-31.3071,0	1/1:78:0,78:0:0:78:2781:-249.839,-23.4803,0
chr04	15997877	.	C	T	129162	PASS	AB=0.495202;ABP=3.80212;AC=141;AF=0.758065;AN=186;AO=6199;CIGAR=1X;DP=8209;DPB=8209;DPRA=29.7319;EPP=13464;EPPR=4350.3;GTI=1;LEN=1;MEANALT=1.03261;MQM=53.1545;MQMR=59.96;NS=93;NUMALT=1;ODDS=2.29108;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220507;QR=70610;RO=2002;RPL=6199;RPP=13464;RPPR=4350.3;RPR=0;RUN=1;SAF=6199;SAP=13464;SAR=0;SRF=2002;SRP=4350.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:32,28:32:1118:28:987:-70.7531,0,-82.8642	1/1:141:1,140:1:36:140:5009:-444.416,-38.847,0	1/1:68:0,68:0:0:68:2414:-216.257,-20.47,0	1/1:196:1,195:1:36:195:6970:-621.92,-55.4036,0	1/1:65:0,65:0:0:65:2319:-208.098,-19.567,0	1/1:71:0,71:0:0:71:2506:-224.956,-21.3731,0	0/1:158:65,93:65:2281:93:3310:-250.252,0,-157.982	1/1:174:0,174:0:0:174:6147:-549.701,-52.3792,0	0/1:105:37,68:37:1296:68:2390:-182.967,0,-85.3302	1/1:103:0,103:0:0:103:3692:-332.149,-31.0061,0	1/1:50:0,50:0:0:50:1778:-160.123,-15.0515,0	1/1:79:0,79:0:0:79:2817:-252.512,-23.7814,0	1/1:86:0,86:0:0:86:3066:-275.071,-25.8886,0	1/1:65:0,65:0:0:65:2302:-206.917,-19.567,0	1/1:65:0,65:0:0:65:2332:-209.823,-19.567,0	0/1:50:26,24:26:909:24:856:-62.0956,0,-67.0719	1/1:65:0,65:0:0:65:2323:-206.475,-19.567,0	0/1:78:40,38:40:1424:38:1367:-98.1397,0,-104.977	0/1:37:17,20:17:600:20:712:-53.0539,0,-43.1911	0/1:166:74,91:74:2623:91:3240:-241.174,0,-186.286	0/1:97:55,42:55:1955:42:1504:-106.192,0,-147.024	0/1:59:43,16:43:1531:16:572:-33.9375,0,-120.322	0/1:60:32,28:32:1123:28:991:-71.2448,0,-83.3153	1/1:139:4,135:4:144:135:4827:-418.176,-28.5296,0	1/1:44:1,43:1:36:43:1542:-135.171,-9.64705,0	0/1:277:149,128:149:5261:128:4574:-328.153,0,-390.241	0/1:118:59,59:59:2074:59:2093:-152.587,0,-151.406	1/1:46:0,46:0:0:46:1635:-147.124,-13.8474,0	0/1:217:101,116:101:3557:116:4136:-306.365,0,-255.018	0/1:112:52,60:52:1832:60:2139:-157.132,0,-131.442	1/1:132:0,132:0:0:132:4614:-413.078,-39.736,0	0/1:4:3,1:3:104:1:36:-2.3873,0,-8.49869	0/1:13:5,8:5:180:8:284:-21.9321,0,-12.6387	1/1:4:0,4:0:0:4:144:-13.27,-1.20412,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.81432,-0.60206,0	1/1:192:0,192:0:0:192:6846:-614.518,-57.7978,0	1/1:134:1,133:1:32:133:4716:-419.694,-37.1387,0	0/1:81:47,34:47:1632:34:1192:-82.6592,0,-122.782	1/1:1:0,1:0:0:1:36:-3.59142,-0.30103,0	0/1:147:88,59:88:3080:59:2112:-144.842,0,-233.177	0/1:45:17,28:17:596:28:992:-75.1861,0,-40.4214	0/1:135:61,74:61:2148:74:2633:-195.741,0,-152.947	0/1:89:52,37:52:1864:37:1316:-91.1351,0,-141.248	1/1:90:0,90:0:0:90:3203:-287.82,-27.0927,0	0/1:138:66,72:66:2328:72:2584:-190.825,0,-168.166	0/1:110:61,49:61:2152:49:1737:-122.815,0,-160.832	0/1:125:70,53:70:2477:53:1888:-132.556,0,-185.768	0/1:132:65,67:65:2277:67:2379:-174.236,0,-165.453	1/1:85:0,85:0:0:85:3013:-270.68,-25.5876,0	1/1:106:0,106:0:0:106:3767:-338.589,-31.9092,0	1/1:8:0,8:0:0:8:288:-26.2259,-2.40824,0	1/1:120:0,120:0:0:120:4261:-382.431,-36.1236,0	0/1:71:40,31:40:1391:31:1103:-77.841,0,-104.108	1/1:21:0,21:0:0:21:752:-67.3646,-6.32163,0	0/1:87:42,45:42:1499:45:1603:-117.926,0,-109.014	1/1:48:0,48:0:0:48:1724:-155.228,-14.4494,0	0/1:4:1,3:1:36:3:108:-8.86626,0,-2.39415	0/1:15:4,11:4:144:11:377:-29.0785,0,-8.79817	0/1:50:16,34:16:568:34:1224:-94.8817,0,-36.4004	1/1:111:0,111:0:0:111:3962:-356.198,-33.4143,0	1/1:2:0,2:0:0:2:72:-6.82968,-0.60206,0	0/1:193:94,99:94:3344:99:3501:-256.656,0,-243.077	1/1:95:0,95:0:0:95:3395:-305.009,-28.5979,0	0/1:54:23,31:23:824:31:1116:-84.1154,0,-58.2277	1/1:73:0,73:0:0:73:2620:-235.667,-21.9752,0	0/1:135:67,68:67:2354:68:2436:-178.503,0,-171.477	0/1:86:56,30:56:1959:30:1062:-69.3217,0,-150.694	1/1:14:0,14:0:0:14:496:-44.7406,-4.21442,0	1/1:39:0,39:0:0:39:1400:-125.457,-11.7402,0	1/1:90:0,90:0:0:90:3202:-287.776,-27.0927,0	0/1:33:12,21:12:428:21:743:-56.9845,0,-28.9248	1/1:76:0,76:0:0:76:2688:-239.475,-22.8783,0	0/1:70:38,32:38:1334:32:1139:-81.2358,0,-99.282	1/1:156:0,156:0:0:156:5453:-489.461,-46.9607,0	1/1:151:0,151:0:0:151:5369:-482.248,-45.4555,0	0/1:120:52,63:52:1848:63:2238:-165.409,0,-131.622	0/1:57:36,21:36:1279:21:748:-50.2753,0,-98.2532	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:90:0,90:0:0:90:3201:-287.484,-27.0927,0	1/1:86:0,86:0:0:86:3084:-275.397,-25.8886,0	1/1:232:0,232:0:0:232:8222:-737.96,-69.839,0	1/1:116:0,116:0:0:116:4090:-366.827,-34.9195,0	1/1:73:0,73:0:0:73:2604:-234.227,-21.9752,0	0/1:77:42,35:42:1478:35:1242:-88.6512,0,-110.134	1/1:132:0,132:0:0:132:4697:-422.301,-39.736,0	0/1:48:23,25:23:801:25:888:-65.3249,0,-57.9573	0/1:82:40,42:40:1428:42:1496:-109.372,0,-104.125	1/1:84:0,84:0:0:84:2979:-266.548,-25.2865,0	1/1:43:0,43:0:0:43:1504:-134.996,-12.9443,0	0/1:108:51,57:51:1774:57:2044:-149.893,0,-127.43	0/1:57:37,20:37:1307:20:716:-47.5188,0,-100.772	1/1:105:0,105:0:0:105:3754:-337.522,-31.6082,0	1/1:78:0,78:0:0:78:2792:-250.881,-23.4803,0
chr04	15997947	.	G	T	39347	PASS	AB=0.568199;ABP=163.838;AC=46;AF=0.247312;AN=186;AO=2275;CIGAR=1X;DP=8304;DPB=8304;DPRA=1.03529;EPP=4943.11;EPPR=13086.1;GTI=3;LEN=1;MEANALT=1;MQM=59.742;MQMR=59.9648;NS=93;NUMALT=1;ODDS=0.817615;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80838;QR=213943;RO=6029;RPL=0;RPP=4943.11;RPPR=13086.1;RPR=2275;RUN=1;SAF=0;SAP=4943.11;SAR=2275;SRF=0;SRP=13094.8;SRR=6029;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:9,20:9:298:20:720:-56.3974,0,-18.4117	0/0:118:118,0:118:4155:0:0:0,-35.5215,-374.116	0/0:94:93,1:93:3305:1:36:0,-24.6985,-294.07	0/0:216:216,0:216:7686:0:0:0,-65.0225,-691.777	0/0:63:63,0:63:2230:0:0:0,-18.9649,-200.963	0/0:60:60,0:60:2124:0:0:0,-18.0618,-191.426	0/1:143:68,75:68:2418:75:2666:-197.091,0,-174.822	0/0:96:96,0:96:3414:0:0:0,-28.8989,-307.475	0/1:85:39,46:39:1396:46:1594:-118.11,0,-100.323	0/0:106:106,0:106:3736:0:0:0,-31.9092,-336.441	0/0:50:50,0:50:1761:0:0:0,-15.0515,-158.761	0/0:96:96,0:96:3316:0:0:0,-28.8989,-298.658	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:49:48,1:48:1698:1:36:0,-11.1522,-149.506	0/1:54:25,29:25:892:29:1021:-75.9428,0,-64.3441	0/0:46:46,0:46:1624:0:0:0,-13.8474,-146.429	0/1:66:32,34:32:1122:34:1209:-89.2461,0,-81.4183	0/1:51:24,27:24:860:27:956:-71.0004,0,-62.3693	0/1:122:59,63:59:2112:63:2249:-165.945,0,-153.623	0/1:147:62,85:62:2185:85:3009:-225.835,0,-152.663	0/1:82:29,53:29:1032:53:1889:-145.598,0,-68.509	0/1:86:41,45:41:1455:45:1578:-116.418,0,-105.353	0/0:138:134,4:134:4777:4:144:0,-28.2285,-416.771	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:268:122,146:122:4376:146:5227:-389.617,0,-313.067	0/1:131:59,72:59:2112:72:2563:-191.455,0,-150.914	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.575	0/1:195:78,117:78:2784:117:4166:-316.395,0,-192.1	0/1:152:66,86:66:2376:86:3077:-231.355,0,-168.341	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:197:197,0:197:6877:0:0:0,-59.3029,-619.007	0/0:118:116,2:116:4119:2:72:0,-28.6848,-364.04	0/1:55:28,27:28:992:27:957:-69.8872,0,-73.0306	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:106:51,55:51:1806:55:1934:-142.42,0,-130.73	0/1:38:24,14:24:846:14:504:-34.259,0,-65.0187	0/1:154:57,97:57:2027:97:3452:-264.53,0,-136.343	0/1:55:28,27:28:989:27:942:-68.3758,0,-72.7654	0/0:56:56,0:56:1972:0:0:0,-16.8577,-177.753	0/1:100:44,56:44:1554:56:1995:-149.709,0,-110.047	0/1:90:34,56:34:1220:56:1986:-151.885,0,-83.0141	0/1:140:46,94:46:1628:94:3321:-256.784,0,-104.661	0/1:133:64,69:64:2292:69:2471:-182.607,0,-166.504	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.527	0/0:200:200,0:200:7103:0:0:0,-60.206,-639.32	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:175:175,0:175:6218:0:0:0,-52.6802,-559.718	0/1:71:30,41:30:1055:41:1460:-110.322,0,-73.8869	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/1:111:22,89:22:775:89:3178:-252.502,0,-36.6569	0/0:76:76,0:76:2706:0:0:0,-22.8783,-243.783	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:86:45,41:45:1608:41:1450:-104.904,0,-119.122	0/0:118:118,0:118:4200:0:0:0,-35.5215,-378.181	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:149:68,81:68:2395:81:2870:-213.589,0,-170.952	0/0:170:169,1:169:6053:1:36:0,-47.5768,-541.273	0/1:78:47,31:47:1683:31:1108:-76.5507,0,-128.276	0/0:73:73,0:73:2599:0:0:0,-21.9752,-234.159	0/1:209:83,126:83:2963:126:4476:-340.002,0,-203.988	0/1:137:47,90:47:1680:90:3184:-245.541,0,-109.755	0/0:25:25,0:25:870:0:0:0,-7.52575,-78.6146	0/0:72:71,1:71:2528:1:21:0,-19.5742,-225.672	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.593	0/1:34:20,14:20:692:14:496:-34.7359,0,-52.3636	0/0:131:131,0:131:4633:0:0:0,-39.4349,-417.135	0/1:40:11,29:11:383:29:1040:-81.8732,0,-22.762	0/0:181:181,0:181:6431:0:0:0,-54.4864,-578.88	0/0:131:131,0:131:4643:0:0:0,-39.4349,-418.032	0/1:136:50,86:50:1778:86:3041:-232.965,0,-119.361	0/1:114:49,65:49:1729:65:2336:-176.181,0,-121.575	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/0:94:94,0:94:3338:0:0:0,-28.2968,-300.638	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.551	0/0:266:266,0:266:9494:0:0:0,-80.074,-854.419	0/0:113:113,0:113:3996:0:0:0,-34.0164,-359.829	0/0:51:51,0:51:1792:0:0:0,-15.3525,-161.559	0/1:56:24,32:24:852:32:1135:-85.6003,0,-60.1427	0/0:125:125,0:125:4390:0:0:0,-37.6287,-395.275	0/1:31:18,13:18:639:13:468:-33.1277,0,-48.5063	0/1:67:39,28:39:1378:28:1008:-70.8673,0,-104.148	0/0:75:75,0:75:2660:0:0:0,-22.5772,-239.645	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/1:94:44,50:44:1530:50:1764:-130.713,0,-109.691	0/1:41:17,24:17:603:24:845:-64.0249,0,-42.2573	0/0:94:94,0:94:3351:0:0:0,-28.2968,-301.807	0/0:80:80,0:80:2843:0:0:0,-24.0824,-256.106
chr04	16445231	.	A	G	73378.5	PASS	AB=0.442453;ABP=75.2379;AC=140;AF=0.76087;AN=184;AO=3534;CIGAR=1X;DP=4938;DPB=4938;DPRA=0;EPP=7642.29;EPPR=3032.24;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.6511;MQMR=59.9907;NS=92;NUMALT=1;ODDS=0.0250909;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125710;QR=50162;RO=1403;RPL=5;RPP=7633.63;RPPR=3032.24;RPR=3529;RUN=1;SAF=1;SAP=7668.31;SAR=3533;SRF=0;SRP=3049.59;SRR=1403;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:10,16:10:360:16:563:-43.1701,0,-24.9175	1/1:57:2,55:2:68:55:1972:-171.294,-10.701,0	1/1:111:0,111:0:0:111:3961:-356.6,-33.4143,0	1/1:72:0,72:0:0:72:2555:-230.108,-21.6742,0	0/1:29:3,26:3:108:26:924:-74.7478,0,-1.3453	1/1:18:0,18:0:0:18:648:-58.6453,-5.41854,0	0/1:66:30,36:30:1076:36:1287:-96.2579,0,-77.2849	1/1:87:1,86:1:36:86:3049:-271.025,-22.5913,0	0/1:21:8,13:8:288:13:468:-36.1298,0,-19.9458	1/1:54:0,54:0:0:54:1920:-173.071,-16.2556,0	1/1:49:0,49:0:0:49:1737:-156.608,-14.7505,0	1/1:67:0,67:0:0:67:2381:-214.501,-20.169,0	1/1:46:0,46:0:0:46:1625:-146.52,-13.8474,0	1/1:59:0,59:0:0:59:2077:-187.185,-17.7608,0	1/1:52:0,52:0:0:52:1844:-166.238,-15.6536,0	0/1:49:30,19:30:1061:19:675:-46.3265,0,-81.0489	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	0/1:30:17,13:17:612:13:464:-33.055,0,-46.3825	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:74:60,14:60:2160:14:496:-22.6957,0,-172.39	0/1:72:45,27:45:1616:27:968:-65.754,0,-124.056	0/1:68:48,20:48:1720:20:716:-44.2977,0,-134.615	0/1:36:13,23:13:468:23:816:-62.9199,0,-31.6226	0/1:28:3,25:3:108:25:900:-72.8922,0,-1.64633	1/1:37:0,37:0:0:37:1324:-119.415,-11.1381,0	0/1:124:64,60:64:2295:60:2126:-154.279,0,-169.483	0/1:108:58,50:58:2067:50:1783:-128.232,0,-153.789	1/1:24:0,24:0:0:24:856:-77.3593,-7.22472,0	0/1:106:60,46:60:2147:46:1636:-115.62,0,-161.588	0/1:131:81,50:81:2899:50:1780:-121.038,0,-221.71	1/1:62:0,62:0:0:62:2219:-199.961,-18.6639,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:109:0,109:0:0:109:3886:-349.93,-32.8123,0	1/1:98:0,98:0:0:98:3493:-314.527,-29.5009,0	0/1:24:8,16:8:288:16:534:-41.1332,0,-19.0427	.:.:.:.:.:.:.:.	0/1:83:48,35:48:1728:35:1256:-88.3565,0,-130.82	1/1:30:0,30:0:0:30:1080:-97.4994,-9.0309,0	0/1:93:58,34:58:2047:34:1206:-80.7896,0,-156.444	0/1:32:21,11:21:748:11:363:-23.3541,0,-58.0123	1/1:22:0,22:0:0:22:788:-71.2424,-6.62266,0	0/1:73:34,39:34:1212:39:1387:-103.147,0,-87.4111	0/1:55:34,21:34:1220:21:756:-51.8024,0,-93.5502	0/1:124:63,61:63:2243:61:2168:-157.966,0,-164.805	1/1:50:0,50:0:0:50:1779:-160.387,-15.0515,0	1/1:55:0,55:0:0:55:1968:-177.307,-16.5567,0	1/1:40:0,40:0:0:40:1428:-128.812,-12.0412,0	1/1:5:0,5:0:0:5:176:-16.1841,-1.50515,0	1/1:74:0,74:0:0:74:2637:-237.33,-22.2762,0	0/1:47:14,33:14:504:33:1184:-92.6888,0,-31.5497	.:.:.:.:.:.:.:.	0/1:75:43,32:43:1522:32:1144:-80.6798,0,-114.694	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	0/1:4:1,3:1:36:3:108:-8.87011,0,-2.39415	0/1:15:10,5:10:360:5:176:-11.6696,0,-28.2289	0/1:59:17,42:17:612:42:1496:-117.169,0,-37.6527	1/1:110:1,109:1:36:109:3851:-343.126,-29.515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:115:53,62:53:1904:62:2210:-164.532,0,-137.014	1/1:103:0,103:0:0:103:3672:-330.644,-31.0061,0	0/1:45:19,26:19:684:26:932:-70.642,0,-48.344	1/1:31:0,31:0:0:31:1103:-99.5775,-9.33193,0	0/1:89:60,29:60:2152:29:1040:-67.1203,0,-167.156	0/1:111:81,30:81:2900:30:1072:-63.3588,0,-227.822	1/1:38:0,38:0:0:38:1360:-122.696,-11.4391,0	1/1:27:0,27:0:0:27:964:-87.0601,-8.12781,0	1/1:41:0,41:0:0:41:1468:-132.413,-12.3422,0	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	1/1:80:0,80:0:0:80:2816:-253.577,-24.0824,0	0/1:42:24,18:24:864:18:644:-45.6391,0,-65.4393	1/1:67:0,67:0:0:67:2369:-213.453,-20.169,0	1/1:73:0,73:0:0:73:2585:-232.621,-21.9752,0	0/1:97:67,30:67:2386:30:1064:-66.8576,0,-185.793	0/1:83:31,52:31:1112:52:1864:-142.833,0,-75.4059	0/1:19:14,5:14:504:5:171:-10.0059,0,-39.9785	1/1:56:0,56:0:0:56:2008:-180.984,-16.8577,0	1/1:40:0,40:0:0:40:1440:-129.86,-12.0412,0	1/1:71:0,71:0:0:71:2531:-228.039,-21.3731,0	1/1:64:0,64:0:0:64:2279:-205.366,-19.2659,0	1/1:47:0,47:0:0:47:1680:-151.48,-14.1484,0	0/1:21:8,13:8:288:13:438:-33.411,0,-19.9458	1/1:80:0,80:0:0:80:2818:-253.853,-24.0824,0	0/1:12:7,5:7:252:5:165:-11.5612,0,-19.4166	0/1:44:32,12:32:1152:12:420:-24.8881,0,-90.7448	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0	1/1:40:0,40:0:0:40:1423:-128.315,-12.0412,0	0/1:109:72,37:72:2541:37:1301:-84.5724,0,-196.126	0/1:24:18,6:18:626:6:216:-12.5658,0,-49.4386	1/1:42:0,42:0:0:42:1504:-135.652,-12.6433,0	1/1:33:0,33:0:0:33:1172:-105.785,-9.93399,0
chr04	16499335	.	G	A	102481	PASS	AB=0.481827;ABP=11.9288;AC=143;AF=0.760638;AN=188;AO=4907;CIGAR=1X;DP=6524;DPB=6524;DPRA=70.1398;EPP=10658.4;EPPR=3514.28;GTI=2;LEN=1;MEANALT=1;MQM=59.9918;MQMR=60;NS=94;NUMALT=1;ODDS=0.308368;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174125;QR=57540;RO=1617;RPL=4907;RPP=10658.4;RPPR=3514.28;RPR=0;RUN=1;SAF=4907;SAP=10658.4;SAR=0;SRF=1617;SRP=3514.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:17,28:17:608:28:980:-74.9666,0,-41.5057	1/1:52:0,52:0:0:52:1848:-166.6,-15.6536,0	1/1:112:0,112:0:0:112:3984:-358.753,-33.7154,0	1/1:172:0,172:0:0:172:6148:-553.421,-51.7772,0	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	1/1:20:0,20:0:0:20:704:-63.6845,-6.0206,0	0/1:75:51,24:51:1819:24:856:-54.7839,0,-141.413	1/1:98:1,97:1:36:97:3426:-304.957,-25.9027,0	0/1:79:41,38:41:1451:38:1349:-97.9278,0,-107.104	1/1:65:0,65:0:0:65:2317:-208.79,-19.567,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:71:0,71:0:0:71:2520:-227.053,-21.3731,0	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:38:0,38:0:0:38:1327:-119.729,-11.4391,0	0/1:49:27,22:27:955:22:780:-55.7726,0,-71.5144	1/1:33:0,33:0:0:33:1160:-104.704,-9.93399,0	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:102:38,64:38:1360:64:2255:-172.506,0,-91.9955	0/1:110:54,56:54:1902:56:1988:-146.081,0,-138.343	0/1:54:38,16:38:1364:16:572:-35.5578,0,-106.805	0/1:88:42,46:42:1500:46:1631:-120.587,0,-108.804	1/1:46:1,45:1:32:45:1588:-140.011,-10.6481,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:236:122,114:122:4341:114:4034:-292.206,0,-319.82	0/1:165:89,76:89:3176:76:2692:-192.854,0,-236.395	1/1:24:0,24:0:0:24:846:-76.4578,-7.22472,0	0/1:147:73,74:73:2598:74:2621:-191.886,0,-189.816	0/1:112:53,59:53:1892:59:2086:-154.292,0,-136.843	1/1:89:0,89:0:0:89:3149:-283.636,-26.7917,0	0/1:3:1,2:1:36:2:57:-4.51022,0,-2.69518	0/1:20:11,9:11:378:9:320:-23.1218,0,-28.3285	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:4:0,4:0:0:4:131:-12.1135,-1.20412,0	1/1:156:0,156:0:0:156:5535:-498.279,-46.9607,0	1/1:110:0,110:0:0:110:3880:-349.31,-33.1133,0	0/1:33:12,21:12:415:21:743:-57.2593,0,-27.7463	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:95:53,42:53:1904:42:1465:-103.545,0,-143.04	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:138:66,72:66:2316:72:2576:-190.546,0,-167.157	0/1:35:22,13:22:776:13:464:-31.5615,0,-59.6261	1/1:59:0,59:0:0:59:2085:-187.919,-17.7608,0	0/1:91:42,49:42:1504:49:1744:-129.851,0,-108.261	0/1:70:30,40:30:1072:40:1417:-106.754,0,-75.7204	0/1:154:82,72:82:2944:72:2580:-186.091,0,-218.835	1/1:69:0,69:0:0:69:2459:-221.564,-20.7711,0	1/1:84:0,84:0:0:84:2953:-266.006,-25.2865,0	1/1:75:0,75:0:0:75:2641:-237.937,-22.5773,0	1/1:12:0,12:0:0:12:420:-38.134,-3.61236,0	1/1:92:0,92:0:0:92:3223:-290.295,-27.6948,0	0/1:67:33,34:33:1184:34:1186:-86.8726,0,-86.6993	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	0/1:113:49,64:49:1733:64:2261:-169.735,0,-122.236	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:7:3,4:3:108:4:136:-10.4677,0,-7.96796	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:42:26,16:26:928:16:563:-38.3559,0,-71.195	1/1:67:2,65:2:72:65:2319:-202.133,-13.3323,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	0/1:167:89,78:89:3183:78:2770:-199.269,0,-236.421	1/1:130:0,130:0:0:130:4582:-412.55,-39.1339,0	0/1:53:14,39:14:500:39:1369:-107.552,0,-29.3816	1/1:70:0,70:0:0:70:2492:-224.477,-21.0721,0	0/1:91:48,43:48:1711:43:1520:-109.699,0,-126.881	0/1:119:79,40:79:2799:40:1427:-92.9042,0,-216.326	1/1:25:0,25:0:0:25:883:-79.7875,-7.52575,0	1/1:48:0,48:0:0:48:1689:-152.294,-14.4494,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:14:7,7:7:248:7:248:-18.4498,0,-18.4498	1/1:96:0,96:0:0:96:3403:-306.487,-28.8989,0	0/1:87:49,38:49:1748:38:1350:-95.6105,0,-131.415	1/1:160:1,159:1:36:159:5679:-507.632,-44.5665,0	1/1:132:0,132:0:0:132:4697:-422.892,-39.736,0	0/1:30:17,13:17:604:13:460:-32.7045,0,-45.6597	0/1:67:41,26:41:1459:26:928:-63.6692,0,-111.436	0/1:23:7,16:7:252:16:572:-44.8897,0,-16.1053	1/1:102:0,102:0:0:102:3631:-326.996,-30.7051,0	1/1:88:0,88:0:0:88:3103:-279.498,-26.4906,0	1/1:136:0,136:0:0:136:4823:-434.23,-40.9401,0	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	1/1:76:0,76:0:0:76:2713:-244.412,-22.8783,0	0/1:44:22,22:22:780:22:776:-56.9168,0,-57.2777	1/1:113:0,113:0:0:113:4015:-361.541,-34.0164,0	0/1:19:13,6:13:452:6:216:-14.0709,0,-35.2915	0/1:67:32,35:32:1139:35:1260:-93.5365,0,-82.6494	1/1:52:0,52:0:0:52:1852:-166.96,-15.6536,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:76:42,34:42:1473:34:1204:-85.7876,0,-109.984	0/1:55:46,9:46:1636:9:320:-12.5857,0,-130.972	1/1:128:0,128:0:0:128:4556:-410.209,-38.5318,0	1/1:92:0,92:0:0:92:3296:-296.859,-27.6948,0
chr04	17074215	.	AGG	CGG,CGA	268716	PASS	AB=0.49632,0.500599;ABP=3.69746,3.02851;AC=145,43;AF=0.771277,0.228723;AN=188;AO=9576,2941;CIGAR=1X2M,1X1M1X;DP=12581;DPB=12581;DPRA=0,1.10936;EPP=20779.7,6389.31;EPPR=31.2394;GTI=0;LEN=1,3;MEANALT=2,2.2449;MQM=59.9989,59.9704;MQMR=60;NS=94;NUMALT=2;ODDS=0.556774;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=341358,103529;QR=409;RO=13;RPL=2,0;RPP=20779.7,6389.31;RPPR=31.2394;RPR=9574,2941;RUN=1,1;SAF=9576,2941;SAP=20797,6389.31;SAR=0,0;SRF=13;SRP=31.2394;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,18,23:0:0:18,23:640,792:-116.83,-64.6696,-59.2511,-52.5108,0,-45.5871	1/1:159:1,157,0:1:36:157,0:5605,0:-500.984,-44.3143,0,-501.285,-47.2617,-504.222	1/1:108:1,107,0:1:36:107,0:3794,0:-338.062,-28.913,0,-338.363,-32.2102,-341.301	1/1:362:0,361,0:0:0:361,0:12902,0:-1160.64,-108.672,0,-1160.64,-108.672,-1160.64	1/1:87:0,87,0:0:0:87,0:3116,0:-280.667,-26.1896,0,-280.667,-26.1896,-280.667	1/1:68:0,68,0:0:0:68,0:2435,0:-219.405,-20.47,0,-219.405,-20.47,-219.405	1/2:191:0,114,77:0:0:114,77:4088,2737:-556.826,-223.394,-189.077,-333.788,0,-310.608	1/1:169:0,168,1:0:0:168,1:5978,36:-537.77,-50.573,0,-534.832,-47.2758,-534.531	1/2:101:1,56,44:1:36:56,44:2000,1573:-288.077,-125.319,-111.399,-160.119,0,-149.811	1/1:153:0,152,1:0:0:152,1:5423,36:-487.841,-45.7566,0,-484.904,-42.4593,-484.602	1/1:97:0,95,0:0:0:95,0:3370,0:-303.211,-28.5979,0,-303.211,-28.5979,-303.211	1/1:90:0,90,0:0:0:90,0:3210,0:-289.122,-27.0927,0,-289.122,-27.0927,-289.122	1/1:77:1,74,0:1:36:74,0:2642,0:-234.463,-19.3205,0,-234.764,-22.2762,-237.702	1/1:116:0,116,0:0:0:116,0:4111,0:-370.177,-34.9195,0,-370.177,-34.9195,-370.177	1/1:75:0,75,0:0:0:75,0:2668,0:-240.365,-22.5773,0,-240.365,-22.5773,-240.365	1/2:75:0,33,42:0:0:33,42:1167,1488:-216.619,-121.57,-111.636,-95.4024,0,-82.7592	1/1:81:0,81,0:0:0:81,0:2851,0:-256.827,-24.3834,0,-256.827,-24.3834,-256.827	1/2:72:0,36,35:0:0:36,35:1292,1234:-205.859,-100.468,-89.6305,-105.387,0,-94.8508	1/2:47:0,22,25:0:0:22,25:779,882:-135.628,-72.1718,-65.5491,-63.8094,0,-56.2837	1/2:308:1,184,122:1:21:184,122:6536,4311:-881.855,-349.573,-295.771,-531.063,0,-495.926	1/2:198:0,102,96:0:0:102,96:3625,3403:-572.983,-277.587,-246.882,-295.751,0,-266.852	1/2:176:0,45,131:0:0:45,131:1608,4615:-507.194,-376.086,-362.539,-131.464,0,-92.0288	1/2:137:0,80,57:0:0:80,57:2821,2013:-393.978,-164.283,-140.2,-230.048,0,-212.889	1/1:203:0,194,9:0:0:194,9:6912,307:-621.81,-58.3998,0,-596.901,-33.1494,-594.192	1/1:91:0,90,0:0:0:90,0:3198,0:-287.684,-27.0927,0,-287.684,-27.0927,-287.684	1/2:460:1,242,214:1:29:242,214:8618,7519:-1311.81,-609.693,-539.152,-700.119,0,-638.007	1/2:237:0,129,108:0:0:129,108:4592,3822:-685.928,-311.668,-272.835,-374.615,0,-342.104	1/1:37:0,35,0:0:0:35,0:1256,0:-112.995,-10.5361,0,-112.995,-10.5361,-112.995	1/2:433:0,218,214:0:0:218,214:7786,7544:-1249.02,-614.23,-548.606,-634.787,0,-570.366	1/2:197:0,85,110:0:0:85,110:3048,3894:-565.791,-317.185,-291.598,-248.602,0,-215.489	1/1:174:0,174,0:0:0:174,0:6166,0:-555.045,-52.3792,0,-555.045,-52.3792,-555.045	1/2:8:0,7,1:0:0:7,1:248,34:-23.3132,-3.09788,-0.990671,-20.557,0,-20.256	1/2:12:0,5,7:0:0:5,7:180,248:-35.2467,-20.5572,-19.052,-15.0469,0,-12.9397	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:10:0,10,0:0:0:10,0:352,0:-32.0182,-3.0103,0,-32.0182,-3.0103,-32.0182	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:185:1,183,0:1:27:183,0:6536,0:-585.577,-53.0046,0,-585.878,-55.0885,-588.007	1/1:314:0,311,0:0:0:311,0:11075,0:-996.288,-93.6203,0,-996.288,-93.6203,-996.288	1/2:83:0,46,37:0:0:46,37:1631,1298:-238.86,-105.982,-92.1342,-133.231,0,-122.093	1/2:4:0,2,2:0:0:2,2:68,49:-9.6157,-4.05248,-3.45042,-5.85565,0,-5.25359	1/2:180:0,80,99:0:0:80,99:2855,3479:-515.912,-283.161,-259.078,-232.745,0,-202.943	1/1:55:0,54,0:0:0:54,0:1932,0:-173.797,-16.2556,0,-173.797,-16.2556,-173.797	1/2:207:0,106,101:0:0:106,101:3747,3518:-591.547,-286.373,-254.463,-305.525,0,-275.121	1/2:94:0,50,44:0:0:50,44:1783,1533:-270.36,-125.012,-109.96,-145.701,0,-132.455	1/1:94:1,93,0:1:36:93,0:3296,0:-293.261,-24.6985,0,-293.562,-27.9958,-296.499	1/2:102:0,53,49:0:0:53,49:1883,1727:-294.403,-140.964,-125.009,-153.793,0,-139.043	1/2:119:0,66,53:0:0:66,53:2340,1850:-341.462,-150.821,-130.953,-190.992,0,-175.037	1/2:251:0,137,114:0:0:137,114:4896,3983:-723.544,-324.345,-283.104,-399.552,0,-365.234	1/1:181:0,181,0:0:0:181,0:6464,0:-581.848,-54.4864,0,-581.848,-54.4864,-581.848	1/1:217:0,215,0:0:0:215,0:7675,0:-690.427,-64.7215,0,-690.427,-64.7215,-690.427	1/1:293:0,292,1:0:0:292,1:10398,36:-935.389,-87.9008,0,-932.451,-84.6035,-932.15	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:208:0,207,0:0:0:207,0:7419,0:-667.394,-62.3132,0,-667.394,-62.3132,-667.394	1/2:72:0,27,45:0:0:27,45:972,1560:-206.448,-127.132,-119.005,-79.6701,0,-66.1237	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:181:1,120,59:1:36:120,59:4270,2080:-514.162,-166.459,-133.273,-34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chr04	17074326	.	G	A	42395.7	PASS	AB=0.510708;ABP=7.89312;AC=43;AF=0.228723;AN=188;AO=2526;CIGAR=1X;DP=10299;DPB=10299;DPRA=1.52049;EPP=5479.47;EPPR=16529.7;GTI=1;LEN=1;MEANALT=1.01786;MQM=59.8226;MQMR=59.8766;NS=94;NUMALT=1;ODDS=0.495483;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89988;QR=274958;RO=7770;RPL=1;RPP=5479.47;RPPR=16521.1;RPR=2525;RUN=1;SAF=0;SAP=5488.15;SAR=2526;SRF=1;SRP=16866.7;SRR=7769;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:19,23:19:668:23:817:-61.2063,0,-47.7997	0/0:172:171,1:171:6069:1:36:0,-48.1799,-542.629	0/0:160:159,0:159:5679:0:0:0,-47.8638,-510.858	0/0:244:243,1:243:8560:1:36:0,-69.853,-766.809	0/0:82:81,1:81:2865:1:36:0,-21.0862,-254.489	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.819	0/1:154:94,60:94:3347:60:2139:-146.419,0,-255.061	0/0:185:184,1:184:6531:1:36:0,-52.0933,-583.64	0/1:84:35,49:35:1224:49:1752:-132.661,0,-85.1744	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/0:57:57,0:57:1981:0:0:0,-17.1587,-178.559	0/0:76:76,0:76:2681:0:0:0,-22.8783,-241.526	0/0:50:50,0:50:1754:0:0:0,-15.0515,-158.142	0/0:74:74,0:74:2578:0:0:0,-22.2762,-232.266	0/1:45:26,19:26:932:19:675:-47.5306,0,-70.6516	0/0:52:52,0:52:1839:0:0:0,-15.6536,-165.782	0/1:62:30,32:30:1068:32:1139:-84.1318,0,-77.7664	0/1:45:27,18:27:968:18:644:-44.7442,0,-73.891	0/1:231:129,102:129:4582:102:3652:-259.346,0,-342.987	0/1:224:108,116:108:3824:116:4109:-302.565,0,-276.883	0/1:132:55,77:55:1953:77:2760:-208.902,0,-136.307	0/1:114:55,59:55:1956:59:2105:-155.389,0,-141.998	0/0:140:132,8:132:4679:8:284:0,-16.2408,-395.369	0/0:70:70,0:70:2470:0:0:0,-21.0721,-222.554	0/1:428:219,209:219:7711:209:7491:-545.37,0,-565.191	0/1:212:117,95:117:4152:95:3394:-241.85,0,-310.046	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.264	0/1:284:147,137:147:5247:137:4882:-353.956,0,-386.876	0/1:159:77,82:77:2724:82:2933:-216.34,0,-197.531	0/0:149:149,0:149:5239:0:0:0,-44.8535,-471.649	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:217:215,2:215:7507:2:72:0,-58.4868,-668.522	0/0:295:294,1:294:10432:1:36:0,-85.2056,-935.131	0/1:57:31,26:31:1089:26:932:-67.0402,0,-81.1573	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:165:84,81:84:2959:81:2834:-205.594,0,-216.383	0/0:34:34,0:34:1194:0:0:0,-10.235,-107.764	0/1:191:89,102:89:3140:102:3624:-268.862,0,-225.285	0/1:72:37,35:37:1316:35:1248:-90.941,0,-97.0676	0/0:75:75,0:75:2605:0:0:0,-22.5772,-234.693	0/1:100:47,53:47:1641:53:1893:-140.542,0,-117.873	0/1:176:89,87:89:3179:87:3120:-228.026,0,-233.347	0/1:252:126,126:126:4445:126:4477:-327.24,0,-322.471	0/0:110:109,0:109:3865:0:0:0,-32.8123,-347.71	0/0:130:130,0:130:4552:0:0:0,-39.1339,-409.85	0/0:116:116,0:116:4135:0:0:0,-34.9195,-372.262	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:177:177,0:177:6274:0:0:0,-53.2823,-564.129	0/1:59:16,43:16:572:43:1548:-121.852,0,-34.0527	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8423	0/1:163:78,85:78:2792:85:3034:-224.221,0,-202.408	0/0:36:35,1:35:1242:1:36:0,-7.2388,-108.114	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:24:12,12:12:432:12:419:-30.818,0,-31.9965	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:153:152,1:152:5347:1:36:0,-42.4593,-477.751	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:266:134,132:134:4778:132:4688:-342.007,0,-350.053	0/0:250:250,0:250:8869:0:0:0,-75.2575,-798.176	0/1:83:40,43:40:1428:43:1481:-108.485,0,-103.831	0/0:118:118,0:118:4179:0:0:0,-35.5215,-376.293	0/1:225:110,115:110:3883:115:4092:-300.707,0,-281.928	0/1:158:61,97:61:2168:97:3440:-262.021,0,-147.824	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:129:128,1:128:4528:1:36:0,-35.2356,-404.076	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/0:173:173,0:173:6144:0:0:0,-52.0782,-553.053	0/1:49:25,24:25:888:24:836:-60.7674,0,-65.4876	0/0:147:146,1:146:5160:1:36:0,-40.6531,-460.925	0/0:230:230,0:230:8157:0:0:0,-69.2369,-734.148	0/1:102:52,50:52:1864:50:1800:-131.575,0,-137.332	0/1:106:47,59:47:1660:59:2112:-158.439,0,-117.775	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:153:153,0:153:5443:0:0:0,-46.0576,-489.95	0/0:70:69,1:69:2430:1:36:0,-17.4748,-215.357	0/0:348:346,2:346:12257:2:72:0,-97.9217,-1095.57	0/0:102:102,0:102:3532:0:0:0,-30.7051,-317.716	0/0:44:44,0:44:1542:0:0:0,-13.2453,-138.753	0/1:106:48,58:48:1688:58:2045:-152.409,0,-120.294	0/0:131:131,0:131:4627:0:0:0,-39.4349,-416.594	0/1:42:19,23:19:680:23:828:-62.131,0,-48.8752	0/1:101:40,61:40:1428:61:2169:-165.067,0,-98.4126	0/0:62:62,0:62:2173:0:0:0,-18.6639,-195.83	0/0:15:15,0:15:519:0:0:0,-4.51545,-47.0367	0/1:54:22,31:22:776:31:1112:-84.077,0,-53.8481	0/1:69:17,52:17:569:52:1864:-147.268,0,-30.7524	0/0:111:111,0:111:3927:0:0:0,-33.4143,-353.624	0/0:102:102,0:102:3601:0:0:0,-30.7051,-324.223
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chr04	17450267	.	G	A	44264.5	PASS	AB=0.506857;ABP=5.09498;AC=42;AF=0.223404;AN=188;AO=2605;CIGAR=1X;DP=11133;DPB=11133;DPRA=1.20848;EPP=5651.01;EPPR=18412.9;GTI=0;LEN=1;MEANALT=1.02;MQM=59.9678;MQMR=59.8327;NS=94;NUMALT=1;ODDS=3.80115;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93396;QR=304089;RO=8526;RPL=1;RPP=5651.01;RPPR=18412.9;RPR=2604;RUN=1;SAF=2605;SAP=5659.7;SAR=0;SRF=8526;SRP=18517;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:33,24:33:1161:24:864:-60.9239,0,-87.6327	0/0:192:192,0:192:6871:0:0:0,-57.7978,-617.654	0/0:130:130,0:130:4656:0:0:0,-39.1339,-419.182	0/0:226:226,0:226:8047:0:0:0,-68.0328,-724.201	0/0:115:114,1:114:4068:1:36:0,-31.0202,-362.627	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.96	0/1:136:62,74:62:2215:74:2654:-198.166,0,-158.673	0/0:293:293,0:293:10452:0:0:0,-88.2018,-940.559	0/1:91:33,58:33:1172:58:2080:-160.077,0,-78.3844	0/0:131:131,0:131:4652:0:0:0,-39.4349,-418.756	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.862	0/0:88:88,0:88:3118:0:0:0,-26.4906,-280.835	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.839	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.077	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.323	0/1:70:29,41:29:1036:41:1476:-112.064,0,-72.412	0/0:86:86,0:86:3067:0:0:0,-25.8886,-276.246	0/1:63:39,24:39:1396:24:859:-58.6667,0,-106.974	0/1:49:24,25:24:847:25:896:-66.2099,0,-61.7949	0/1:214:124,90:124:4435:90:3236:-227.04,0,-334.899	0/1:153:79,74:79:2820:74:2662:-193.768,0,-207.98	0/1:212:68,144:68:2431:144:5176:-402.159,0,-155.227	0/1:42:26,16:26:920:16:576:-39.5317,0,-70.4288	0/0:151:145,5:145:5172:5:180:0,-28.9621,-449.062	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.877	0/1:455:236,219:236:8451:219:7828:-567.58,0,-623.577	0/1:166:67,99:67:2392:99:3556:-270.275,0,-165.563	0/0:48:47,0:47:1680:0:0:0,-14.1484,-151.124	0/1:349:161,188:161:5752:188:6744:-501.968,0,-412.706	0/1:197:100,97:100:3562:97:3478:-253.858,0,-261.482	0/0:134:133,1:133:4715:1:36:0,-36.7397,-420.91	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9812	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7673	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5025	0/0:262:262,0:262:9349:0:0:0,-78.8699,-841.236	0/0:265:265,0:265:9448:0:0:0,-79.7729,-850.26	0/1:73:39,34:39:1400:34:1216:-87.7714,0,-104.313	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:159:75,84:75:2676:84:3020:-224.166,0,-193.217	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.724	0/1:143:60,83:60:2148:83:2964:-223.946,0,-150.536	0/1:97:48,49:48:1711:49:1760:-129.257,0,-125.074	0/0:85:85,0:85:3006:0:0:0,-25.5875,-270.769	0/1:95:47,48:47:1663:48:1724:-126.848,0,-121.358	0/1:191:102,89:102:3655:89:3180:-228.924,0,-271.496	0/1:309:158,151:158:5620:151:5424:-395.269,0,-412.887	0/0:132:131,1:131:4679:1:36:0,-36.1377,-417.67	0/0:206:205,1:205:7310:1:36:0,-58.4143,-654.238	0/0:163:163,0:163:5810:0:0:0,-49.0679,-523.014	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:118:118,0:118:4220:0:0:0,-35.5215,-379.961	0/1:59:33,26:33:1176:26:932:-66.4381,0,-88.387	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6419	0/1:146:78,68:78:2799:68:2444:-176.264,0,-208.197	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:25:10,15:10:356:15:540:-41.4108,0,-24.8555	0/1:83:39,44:39:1383:44:1575:-117.055,0,-99.781	0/0:134:134,0:134:4779:0:0:0,-40.338,-430.266	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4592	0/1:241:128,113:128:4553:113:4052:-292.318,0,-337.369	0/0:293:288,5:288:10266:5:176:0,-72.0632,-907.713	0/1:103:60,43:60:2147:43:1516:-105.726,0,-162.483	0/0:131:131,0:131:4625:0:0:0,-39.4349,-416.37	0/1:138:71,67:71:2536:67:2397:-174.445,0,-186.949	0/1:103:39,64:39:1387:64:2296:-175.895,0,-94.1213	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:110:110,0:110:3943:0:0:0,-33.1133,-355.043	0/0:117:117,0:117:4180:0:0:0,-35.2205,-376.383	0/1:22:17,5:17:612:5:180:-9.9294,0,-48.7908	0/0:148:148,0:148:5275:0:0:0,-44.5524,-474.765	0/1:53:22,31:22:788:31:1116:-84.7971,0,-55.2868	0/0:168:168,0:168:5978:0:0:0,-50.573,-538.041	0/0:248:248,0:248:8832:0:0:0,-74.6554,-794.866	0/1:209:115,94:115:4108:94:3380:-241.499,0,-306.851	0/1:121:53,68:53:1892:68:2406:-180.368,0,-134.134	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:116:113,3:113:4027:3:104:0,-25.2167,-352.871	0/0:128:128,0:128:4568:0:0:0,-38.5318,-411.234	0/0:229:229,0:229:8170:0:0:0,-68.9359,-735.313	0/0:129:129,0:129:4620:0:0:0,-38.8329,-415.962	0/0:94:94,0:94:3343:0:0:0,-28.2968,-301.087	0/1:97:49,48:49:1726:48:1728:-126.605,0,-126.378	0/0:191:190,1:190:6751:1:36:0,-53.8985,-604.065	0/1:46:26,20:26:923:20:720:-51.2814,0,-69.5327	0/1:85:40,45:40:1436:45:1613:-119.872,0,-103.947	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.142	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.2	0/1:120:61,59:61:2196:59:2124:-155.305,0,-161.778	0/1:86:36,50:36:1284:50:1788:-135.314,0,-89.9709	0/0:90:90,0:90:3188:0:0:0,-27.0927,-287.146	0/0:121:121,0:121:4328:0:0:0,-36.4246,-389.694
chr04	17450283	.	A	C	174513	PASS	AB=0.489796;ABP=7.57482;AC=146;AF=0.776596;AN=188;AO=8394;CIGAR=1X;DP=10986;DPB=10986;DPRA=0;EPP=18221.7;EPPR=5629.3;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.8295;MQMR=59.9618;NS=94;NUMALT=1;ODDS=2.50668;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=295925;QR=92821;RO=2591;RPL=8393;RPP=18221.7;RPPR=5629.3;RPR=1;RUN=1;SAF=8394;SAP=18230.3;SAR=0;SRF=2591;SRP=5629.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:22,32:22:792:32:1136:-86.2899,0,-55.3501	1/1:188:0,188:0:0:188:6636:-597.295,-56.5936,0	1/1:124:0,124:0:0:124:4370:-393.464,-37.3277,0	1/1:220:0,220:0:0:220:7803:-702.26,-66.2266,0	1/1:110:1,109:1:36:109:3844:-342.543,-29.515,0	1/1:77:0,77:0:0:77:2743:-247.105,-23.1793,0	0/1:135:72,63:72:2592:63:2235:-160.773,0,-192.889	1/1:289:0,289:0:0:289:10214:-919.151,-86.9977,0	0/1:93:58,35:58:2071:35:1240:-83.7882,0,-158.664	1/1:135:0,135:0:0:135:4754:-427.933,-40.6391,0	1/1:56:0,56:0:0:56:1961:-176.76,-16.8577,0	1/1:87:0,87:0:0:87:3077:-277.113,-26.1896,0	1/1:71:0,71:0:0:71:2484:-223.799,-21.3731,0	1/1:79:0,79:0:0:79:2793:-251.536,-23.7814,0	1/1:73:0,73:0:0:73:2546:-229.39,-21.9752,0	0/1:66:40,26:40:1428:26:904:-61.8039,0,-108.95	1/1:82:0,82:0:0:82:2810:-253.123,-24.6845,0	0/1:63:24,39:24:860:39:1350:-102.829,0,-58.7569	0/1:47:25,22:25:892:22:764:-54.927,0,-66.4513	0/1:208:87,121:87:3124:121:4311:-325.552,0,-218.771	0/1:148:73,75:73:2612:75:2648:-194.012,0,-190.548	0/1:214:143,71:143:5116:71:2515:-162.182,0,-396.163	0/1:42:16,26:16:576:26:904:-68.9837,0,-39.5313	1/1:157:6,151:6:216:151:5289:-456.351,-27.4712,0	1/1:108:0,108:0:0:108:3791:-341.385,-32.5112,0	0/1:445:216,229:216:7730:229:8089:-594.078,0,-561.773	0/1:165:100,65:100:3596:65:2336:-160.826,0,-274.174	1/1:49:0,49:0:0:49:1676:-151.117,-14.7505,0	0/1:350:188,162:188:6752:162:5691:-406.95,0,-502.386	0/1:195:96,99:96:3448:99:3508:-257.226,0,-251.761	1/1:130:1,129:1:36:129:4575:-408.315,-35.5356,0	1/1:11:0,11:0:0:11:383:-34.8026,-3.31133,0	0/1:11:2,9:2:72:9:312:-25.1034,0,-3.52539	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:9:0,9:0:0:9:309:-28.1373,-2.70927,0	1/1:261:0,261:0:0:261:9175:-825.594,-78.5688,0	1/1:267:0,267:0:0:267:9408:-846.673,-80.375,0	0/1:73:34,39:34:1212:39:1392:-103.593,0,-87.4111	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:159:85,74:85:3037:74:2606:-186.913,0,-225.695	1/1:40:0,40:0:0:40:1397:-126.022,-12.0412,0	0/1:145:85,60:85:3040:60:2131:-148.405,0,-230.181	0/1:98:53,45:53:1888:45:1565:-111.634,0,-140.47	1/1:86:0,86:0:0:86:2976:-268.066,-25.8886,0	0/1:94:48,46:48:1716:46:1617:-117.52,0,-126.429	0/1:189:86,103:86:3080:103:3641:-270.898,0,-220.534	0/1:303:151,152:151:5407:152:5404:-395.263,0,-395.541	1/1:130:1,129:1:36:129:4571:-407.956,-35.5356,0	1/1:201:0,201:0:0:201:7129:-641.597,-60.507,0	1/1:163:0,163:0:0:163:5741:-516.496,-49.0679,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:119:0,119:0:0:119:4206:-378.705,-35.8226,0	0/1:60:25,34:25:892:34:1196:-89.8222,0,-62.4792	1/1:21:0,21:0:0:21:739:-66.829,-6.32163,0	0/1:145:68,77:68:2448:77:2734:-202.652,0,-176.925	1/1:18:0,18:0:0:18:631:-57.1157,-5.41854,0	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:27:16,11:16:576:11:383:-26.6753,0,-44.0472	0/1:78:42,36:42:1512:36:1284:-92.3815,0,-112.888	1/1:135:0,135:0:0:135:4734:-426.218,-40.6391,0	1/1:14:0,14:0:0:14:485:-43.9766,-4.21442,0	0/1:236:114,122:114:4065:122:4269:-313.331,0,-294.993	1/1:286:3,283:3:108:283:10027:-892.247,-76.0194,0	0/1:103:42,61:42:1508:61:2161:-163.742,0,-105.008	1/1:132:0,132:0:0:132:4680:-421.316,-39.736,0	0/1:139:66,73:66:2372:73:2572:-189.886,0,-171.895	0/1:105:65,40:65:2332:40:1423:-96.7578,0,-178.531	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	1/1:108:0,108:0:0:108:3835:-345.33,-32.5112,0	1/1:113:0,113:0:0:113:3952:-355.873,-34.0164,0	0/1:21:5,16:5:171:16:572:-45.4918,0,-9.40382	1/1:144:0,144:0:0:144:5078:-457.11,-43.3483,0	0/1:53:31,22:31:1116:22:788:-55.2868,0,-84.7971	1/1:160:0,160:0:0:160:5657:-509.227,-48.1648,0	1/1:249:0,249:0:0:249:8792:-791.276,-74.9565,0	0/1:203:93,110:93:3340:110:3867:-287.073,0,-239.707	0/1:119:67,52:67:2392:52:1827:-128.886,0,-179.714	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:115:4,111:4:144:111:3929:-340.451,-21.3048,0	1/1:121:0,121:0:0:121:4278:-385.082,-36.4246,0	1/1:223:0,223:0:0:223:7914:-712.287,-67.1297,0	1/1:125:0,125:0:0:125:4378:-394.194,-37.6288,0	1/1:93:0,93:0:0:93:3219:-289.93,-27.9958,0	0/1:95:46,49:46:1640:49:1702:-124.816,0,-119.291	1/1:187:1,186:1:36:186:6520:-583.293,-52.6943,0	0/1:44:19,25:19:684:25:864:-64.8203,0,-48.645	0/1:87:46,41:46:1652:41:1437:-103.433,0,-122.779	1/1:85:0,85:0:0:85:2993:-269.568,-25.5876,0	1/1:39:0,39:0:0:39:1330:-119.972,-11.7402,0	0/1:118:59,59:59:2115:59:2086:-152.485,0,-155.097	0/1:83:52,31:52:1849:31:1116:-75.7623,0,-141.703	1/1:87:0,87:0:0:87:3078:-277.248,-26.1896,0	1/1:120:0,120:0:0:120:4219:-379.888,-36.1236,0
chr04	17450305	.	G	C	57471.8	PASS	AB=0.449447;ABP=165.695;AC=42;AF=0.223404;AN=188;AO=3315;CIGAR=1X;DP=16651;DPB=16651;DPRA=1.10782;EPP=7201.44;EPPR=28946.6;GTI=2;LEN=1;MEANALT=1.07843;MQM=51.2534;MQMR=52.7598;NS=94;NUMALT=1;ODDS=2.5084;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117550;QR=473962;RO=13329;RPL=2592;RPP=2291.19;RPPR=1949.96;RPR=723;RUN=1;SAF=2592;SAP=2291.19;SAR=723;SRF=8393;SRP=1949.96;SRR=4936;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:38,23:38:1327:23:805:-54.4047,0,-100.783	0/0:237:237,0:237:8434:0:0:0,-71.3441,-753.033	0/0:261:261,0:261:9327:0:0:0,-78.5688,-823.646	0/0:330:328,1:328:11686:1:32:0,-96.1707,-1039.39	0/0:150:148,1:148:5263:1:36:0,-41.615,-462.938	0/0:100:100,0:100:3584:0:0:0,-30.103,-320.091	0/1:168:75,93:75:2660:93:3289:-220.252,0,-188.009	0/0:404:404,0:404:14349:0:0:0,-121.616,-1271.64	0/1:125:70,55:70:2491:55:1909:-134.457,0,-182.346	0/0:200:200,0:200:7101:0:0:0,-60.206,-631.431	0/0:111:111,0:111:3953:0:0:0,-33.4143,-350.587	0/0:194:194,0:194:6884:0:0:0,-58.3998,-607.255	0/0:135:135,0:135:4812:0:0:0,-40.639,-426.103	0/0:131:130,1:130:4620:1:34:0,-36.036,-405.713	0/0:149:149,0:149:5319:0:0:0,-44.8535,-471.945	0/1:92:51,41:51:1820:41:1455:-103.55,0,-133.552	0/0:116:116,0:116:4139:0:0:0,-34.9195,-366.411	0/1:70:47,23:47:1680:23:824:-53.4112,0,-129.248	0/1:59:34,25:34:1199:25:874:-61.2144,0,-89.1454	0/1:331:197,134:197:7021:134:4779:-264.652,0,-525.226	0/1:194:121,73:121:4300:73:2579:-173.854,0,-323.337	0/1:286:94,192:94:3350:192:6807:-459.61,0,-212.622	0/1:89:52,37:52:1818:37:1311:-63.9035,0,-134.757	0/0:174:168,6:168:5986:6:212:0,-32.9544,-516.967	0/0:189:189,0:189:6726:0:0:0,-56.8947,-594.435	0/1:658:339,319:339:12066:319:11371:-676.129,0,-874.541	0/1:256:155,101:155:5519:101:3578:-245.161,0,-406.524	0/0:83:83,0:83:2929:0:0:0,-24.9855,-259.134	0/1:505:234,271:234:8342:271:9657:-599.683,0,-590.879	0/1:222:130,92:130:4618:92:3265:-227.242,0,-344.667	0/0:181:179,1:179:6300:1:36:0,-50.9382,-558.206	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2579	0/1:16:14,2:14:491:2:72:-2.02024,0,-39.1623	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:17:17,0:17:612:0:0:0,-5.11751,-53.4608	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.0662	0/0:459:456,0:456:16208:0:0:0,-137.27,-1430.42	0/0:345:345,0:345:12264:0:0:0,-103.855,-1093.33	0/1:97:64,33:64:2284:33:1158:-75.3251,0,-174.096	0/1:10:7,3:7:252:3:108:-7.06487,0,-19.8872	0/1:205:120,85:120:4238:85:2988:-207.44,0,-313.249	0/0:75:75,0:75:2684:0:0:0,-22.5772,-235.994	0/1:204:122,82:122:4345:82:2927:-202.254,0,-321.256	0/1:147:74,73:74:2639:73:2598:-156.982,0,-191.358	0/0:136:136,0:136:4797:0:0:0,-40.9401,-427.637	0/1:216:108,108:108:3850:108:3804:-194.52,0,-273.378	0/1:250:162,88:162:5777:88:3107:-204.6,0,-438.134	0/1:428:217,211:217:7686:211:7444:-454.962,0,-557.829	0/0:242:241,1:241:8627:1:36:0,-69.251,-761.19	0/0:286:286,0:286:10172:0:0:0,-86.0946,-907.51	0/0:238:238,0:238:8469:0:0:0,-71.6451,-751.216	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.6308	0/0:194:194,0:194:6926:0:0:0,-58.3998,-612.659	0/1:99:51,48:51:1812:48:1720:-93.6985,0,-131.906	0/0:22:22,0:22:788:0:0:0,-6.62266,-70.2523	0/1:194:128,66:128:4588:66:2344:-152.82,0,-347.368	0/0:46:46,0:46:1631:0:0:0,-13.8474,-144.41	0/1:23:19,4:19:671:4:144:-6.38993,0,-52.989	0/1:41:19,22:19:671:22:784:-49.8095,0,-46.5102	0/1:164:121,43:121:4305:43:1524:-88.078,0,-326.896	0/0:216:216,0:216:7693:0:0:0,-65.0225,-682.696	0/0:18:18,0:18:636:0:0:0,-5.41854,-56.7279	0/1:342:187,155:187:6681:155:5486:-333.692,0,-489.954	0/0:428:422,6:422:15000:6:216:0,-113.475,-1322.83	0/1:134:90,44:90:3220:44:1537:-98.2787,0,-246.335	0/0:181:181,0:181:6369:0:0:0,-54.4864,-566.363	0/1:243:131,112:131:4654:112:4016:-219.248,0,-340.395	0/1:240:90,150:90:3214:150:5334:-287.536,0,-212.879	0/0:58:58,0:58:2069:0:0:0,-17.4597,-181.413	0/0:152:152,0:152:5412:0:0:0,-45.7566,-482.149	0/0:159:159,0:159:5641:0:0:0,-47.8638,-503.642	0/1:34:25,9:25:880:9:306:-11.7699,0,-68.5975	0/0:253:253,0:253:9007:0:0:0,-76.1606,-797.719	0/1:86:55,31:55:1968:31:1103:-73.6912,0,-147.961	0/0:229:229,0:229:8111:0:0:0,-68.9359,-721.335	0/0:310:310,0:310:11042:0:0:0,-93.3193,-985.607	0/1:263:166,97:166:5915:97:3467:-233.071,0,-446.79	0/1:157:90,67:90:3213:67:2367:-166.026,0,-237.491	0/1:13:6,7:6:216:7:239:-17.9293,0,-15.4466	0/0:186:183,3:183:6443:3:104:0,-46.2888,-560.2	0/0:240:240,0:240:8580:0:0:0,-72.2472,-759.216	0/0:382:382,0:382:13550:0:0:0,-114.993,-1202.26	0/0:193:193,0:193:6875:0:0:0,-58.0988,-612.205	0/0:152:152,0:152:5379:0:0:0,-45.7566,-479	0/1:135:71,64:71:2519:64:2249:-139.919,0,-184.591	0/0:304:302,1:302:10688:1:36:0,-87.9649,-947.44	0/1:59:39,20:39:1384:20:716:-47.0069,0,-105.726	0/1:119:74,45:74:2628:45:1576:-106.305,0,-196.955	0/0:160:160,0:160:5724:0:0:0,-48.1648,-505.804	0/0:64:64,0:64:2279:0:0:0,-19.2659,-201.004	0/1:151:93,58:93:3312:58:2056:-139.853,0,-247.936	0/1:143:55,88:55:1935:88:3131:-187.465,0,-129.941	0/0:149:149,0:149:5264:0:0:0,-44.8535,-468.773	0/0:230:230,0:230:8170:0:0:0,-69.2369,-725.606
chr04	17450326	.	C	T	101210	PASS	AB=0.521122;ABP=14.752;AC=143;AF=0.777174;AN=184;AO=5031;CIGAR=1X;DP=6488;DPB=6488;DPRA=0;EPP=10927.7;EPPR=3166.85;GTI=2;LEN=1;MEANALT=1;MQM=40.7748;MQMR=21.0858;NS=92;NUMALT=1;ODDS=0.508712;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180240;QR=52066;RO=1457;RPL=0;RPP=10927.7;RPPR=3166.85;RPR=5031;RUN=1;SAF=0;SAP=10927.7;SAR=5031;SRF=0;SRP=3166.85;SRR=1457;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:20,5:20:716:5:171:-7.75164,0,-31.9673	1/1:51:0,51:0:0:51:1836:-158.767,-15.3525,0	1/1:135:0,135:0:0:135:4830:-418.885,-40.6391,0	1/1:109:1,108:1:36:108:3868:-336.639,-30.6291,0	1/1:40:1,39:1:36:39:1396:-116.748,-9.85805,0	1/1:32:0,32:0:0:32:1144:-100.104,-9.63296,0	0/1:33:20,13:20:716:13:468:-31.2823,0,-26.5819	1/1:134:0,134:0:0:134:4812:-412.06,-40.338,0	0/1:71:32,39:32:1139:39:1387:-99.1559,0,-41.606	1/1:72:0,72:0:0:72:2552:-221.85,-21.6742,0	1/1:54:0,54:0:0:54:1931:-168.86,-16.2556,0	1/1:110:0,110:0:0:110:3943:-342.017,-33.1133,0	1/1:67:0,67:0:0:67:2388:-208.078,-20.169,0	1/1:54:0,54:0:0:54:1925:-166.174,-16.2556,0	1/1:78:0,78:0:0:78:2796:-244.95,-23.4803,0	0/1:43:20,23:20:720:23:824:-58.6212,0,-26.5707	1/1:35:0,35:0:0:35:1237:-105.451,-10.5361,0	0/1:28:16,12:16:576:12:432:-29.5107,0,-23.2268	0/1:26:12,14:12:428:14:500:-35.8839,0,-15.9475	0/1:123:49,74:49:1760:74:2652:-194.771,0,-52.1022	0/1:101:58,43:58:2071:43:1548:-103.593,0,-84.8766	0/1:74:50,24:50:1792:24:856:-52.0352,0,-68.1075	0/1:46:20,26:20:716:26:932:-67.7306,0,-22.313	0/1:26:5,21:5:180:21:752:-56.9474,0,-2.21571	1/1:81:0,81:0:0:81:2900:-249.549,-24.3834,0	0/1:206:103,103:103:3700:103:3700:-257.369,0,-123.856	0/1:160:72,88:72:2588:88:3164:-223.014,0,-93.6714	1/1:36:0,36:0:0:36:1292:-111.471,-10.8371,0	0/1:156:82,74:82:2927:74:2644:-183.125,0,-99.9336	0/1:65:26,39:26:936:39:1392:-101.514,0,-32.645	1/1:52:0,52:0:0:52:1864:-161.697,-15.6536,0	.:.:.:.:.:.:.:.	0/1:7:2,5:2:72:5:180:-13.7834,0,-2.04078	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:424:-36.8875,-3.61236,0	1/1:9:0,9:0:0:9:324:-28.4569,-2.70927,0	1/1:209:0,209:0:0:209:7490:-645.789,-62.9153,0	1/1:84:0,84:0:0:84:3016:-260.538,-25.2865,0	0/1:40:13,27:13:464:27:964:-72.2874,0,-13.6979	0/1:7:6,1:6:207:1:36:-1.34728,0,-9.93769	0/1:82:36,46:36:1275:46:1652:-117.355,0,-46.1102	1/1:36:0,36:0:0:36:1292:-110.896,-10.8371,0	0/1:121:58,63:58:2084:63:2260:-158.392,0,-78.0709	0/1:48:23,25:23:815:25:896:-64.259,0,-26.8534	1/1:54:0,54:0:0:54:1920:-168.305,-16.2556,0	0/1:123:58,65:58:2080:65:2338:-163.717,0,-66.9872	0/1:129:67,62:67:2388:62:2216:-154.338,0,-92.898	0/1:123:63,60:63:2218:60:2144:-151.002,0,-75.9915	1/1:119:0,119:0:0:119:4276:-372.646,-35.8226,0	1/1:81:0,81:0:0:81:2912:-253.63,-24.3834,0	1/1:78:0,78:0:0:78:2808:-242.395,-23.4803,0	1/1:3:0,3:0:0:3:108:-9.80756,-0.90309,0	1/1:77:0,77:0:0:77:2756:-237.463,-23.1793,0	0/1:40:22,18:22:788:18:633:-43.5638,0,-27.5324	1/1:3:0,3:0:0:3:108:-9.05109,-0.90309,0	0/1:95:41,54:41:1468:54:1927:-137.494,0,-52.1349	1/1:26:0,26:0:0:26:936:-81.6641,-7.82678,0	1/1:9:0,9:0:0:9:324:-28.5617,-2.70927,0	0/1:15:7,8:7:252:8:284:-19.0552,0,-8.56754	0/1:120:35,85:35:1247:85:3048:-226.91,0,-33.4376	1/1:84:0,84:0:0:84:3011:-261.542,-25.2865,0	1/1:4:0,4:0:0:4:144:-12.405,-1.20412,0	0/1:108:43,65:43:1525:65:2340:-170.268,0,-44.7755	1/1:135:4,131:4:144:131:4703:-401.999,-31.8787,0	0/1:37:9,28:9:324:28:1008:-76.3079,0,-6.76373	1/1:54:0,54:0:0:54:1906:-165.404,-16.2556,0	0/1:104:47,57:47:1688:57:2040:-147.03,0,-53.0265	0/1:137:84,53:84:2982:53:1904:-125.543,0,-109.32	1/1:41:0,41:0:0:41:1476:-127.965,-12.3422,0	1/1:43:0,43:0:0:43:1548:-134.379,-12.9443,0	1/1:43:0,43:0:0:43:1548:-134.743,-12.9443,0	0/1:12:5,7:5:180:7:252:-18.7608,0,-5.71688	1/1:115:0,115:0:0:115:4120:-357.519,-34.6185,0	0/1:65:31,34:31:1095:34:1220:-86.7424,0,-41.4035	1/1:66:0,66:0:0:66:2372:-204.061,-19.868,0	1/1:64:0,64:0:0:64:2296:-197.978,-19.2659,0	0/1:135:77,58:77:2768:58:2080:-140.464,0,-111.021	0/1:60:21,39:21:752:39:1400:-103.487,0,-23.3961	1/1:3:0,3:0:0:3:104:-9.21703,-0.90309,0	1/1:71:0,71:0:0:71:2544:-218.315,-21.3731,0	1/1:112:0,112:0:0:112:4024:-349.018,-33.7154,0	1/1:152:0,152:0:0:152:5450:-474.192,-45.7566,0	1/1:67:0,67:0:0:67:2392:-208.73,-20.169,0	1/1:63:0,63:0:0:63:2268:-198.403,-18.9649,0	0/1:39:17,22:17:593:22:792:-57.8763,0,-19.0139	1/1:121:0,121:0:0:121:4320:-377.419,-36.4246,0	0/1:20:6,14:6:216:14:500:-37.8829,0,-5.98673	0/1:58:27,31:27:968:31:1103:-78.9793,0,-36.0341	1/1:82:0,82:0:0:82:2936:-254.392,-24.6845,0	1/1:25:0,25:0:0:25:896:-76.3358,-7.52575,0	0/1:65:30,35:30:1076:35:1252:-88.4536,0,-39.5745	0/1:57:38,19:38:1360:19:680:-42.672,0,-51.3099	1/1:63:0,63:0:0:63:2264:-198.513,-18.9649,0	1/1:110:0,110:0:0:110:3939:-344.62,-33.1133,0
chr04	17450334	.	A	C	4653.6	PASS	AB=0.481004;ABP=12.4975;AC=41;AF=0.222826;AN=184;AO=1463;CIGAR=1X;DP=6444;DPB=6444;DPRA=1.10653;EPP=3179.87;EPPR=10801.7;GTI=2;LEN=1;MEANALT=1.06667;MQM=21.1005;MQMR=40.7826;NS=92;NUMALT=1;ODDS=0.987565;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52177;QR=177828;RO=4977;RPL=0;RPP=3179.87;RPPR=10801.7;RPR=1463;RUN=1;SAF=0;SAP=3179.87;SAR=1463;SRF=0;SRP=10810.4;SRR=4977;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:6,20:6:201:20:705:-31.3846,0,-10.0475	0/0:51:51,0:51:1819:0:0:0,-15.3525,-157.548	0/0:130:130,0:130:4651:0:0:0,-39.1339,-403.154	0/0:104:103,1:103:3688:1:36:0,-29.124,-320.877	0/0:40:39,1:39:1404:1:36:0,-9.85805,-117.109	0/0:32:32,0:32:1148:0:0:0,-9.63296,-100.431	0/1:33:12,21:12:432:21:752:-28.7197,0,-28.1298	0/0:130:130,0:130:4644:0:0:0,-39.1339,-397.157	0/1:71:38,33:38:1364:33:1171:-43.5489,0,-97.0429	0/0:65:65,0:65:2316:0:0:0,-19.5669,-201.496	0/0:53:53,0:53:1900:0:0:0,-15.9546,-165.86	0/0:104:104,0:104:3716:0:0:0,-31.3071,-322.486	0/0:69:69,0:69:2432:0:0:0,-20.7711,-211.846	0/0:52:52,0:52:1838:0:0:0,-15.6536,-159.135	0/0:78:78,0:78:2804:0:0:0,-23.4803,-245.547	0/1:44:23,21:23:824:21:752:-28.2126,0,-58.3202	0/0:34:34,0:34:1224:0:0:0,-10.235,-104.168	0/1:28:12,16:12:432:16:567:-23.1346,0,-29.5107	0/1:26:14,12:14:500:12:428:-15.9475,0,-35.8839	0/1:126:76,50:76:2720:50:1792:-53.1424,0,-199.868	0/1:102:40,62:40:1440:62:2216:-92.666,0,-93.6647	0/1:73:25,48:25:879:48:1716:-64.8137,0,-54.5196	0/1:46:26,20:26:936:20:703:-22.413,0,-68.0416	0/1:26:21,5:21:743:5:180:-2.21571,0,-56.2456	0/0:80:80,0:80:2853:0:0:0,-24.0824,-245.57	0/1:205:101,103:101:3612:103:3696:-124.245,0,-250.539	0/1:161:89,72:89:3183:72:2559:-93.1691,0,-225.196	0/0:36:36,0:36:1296:0:0:0,-10.8371,-111.758	0/1:153:75,77:75:2688:77:2733:-91.879,0,-187.798	0/1:66:40,26:40:1431:26:928:-32.3,0,-104.534	0/0:54:54,0:54:1924:0:0:0,-16.2556,-167.243	.:.:.:.:.:.:.:.	0/1:7:5,2:5:176:2:72:-2.04078,0,-13.4906	.:.:.:.:.:.:.:.	0/0:12:12,0:12:420:0:0:0,-3.61236,-36.3582	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.4569	0/0:204:204,0:204:7306:0:0:0,-61.4101,-628.888	0/0:85:85,0:85:3029:0:0:0,-25.5875,-261.826	0/1:40:27,13:27:968:13:455:-13.6055,0,-72.5876	0/1:6:1,5:1:36:5:180:-8.41146,0,-1.64831	0/1:80:45,33:45:1608:33:1184:-41.3373,0,-114.659	0/0:36:36,0:36:1296:0:0:0,-10.8371,-111.473	0/1:120:61,59:61:2179:59:2116:-80.3148,0,-151.79	0/1:48:25,23:25:900:23:824:-26.9145,0,-64.57	0/0:55:55,0:55:1957:0:0:0,-16.5566,-171.223	0/1:122:63,59:63:2235:59:2107:-69.0176,0,-155.53	0/1:126:60,66:60:2130:66:2368:-91.9239,0,-147.827	0/1:124:61,63:61:2177:63:2240:-75.83,0,-153.45	0/0:120:120,0:120:4300:0:0:0,-36.1236,-374.848	0/0:80:80,0:80:2847:0:0:0,-24.0824,-248.847	0/0:80:80,0:80:2863:0:0:0,-24.0824,-247.332	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.48643	0/0:76:76,0:76:2715:0:0:0,-22.8783,-233.921	0/1:39:18,21:18:640:21:752:-26.043,0,-44.5174	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.05109	0/1:92:51,41:51:1816:41:1467:-52.9899,0,-129.891	0/0:25:25,0:25:896:0:0:0,-7.52575,-78.2006	0/0:9:8,1:8:288:1:32:0,-0.735584,-23.4555	0/1:15:8,7:8:288:7:248:-8.55324,0,-19.3583	0/1:120:84,36:84:2989:36:1274:-35.3105,0,-221.96	0/0:85:85,0:85:3043:0:0:0,-25.5875,-263.9	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.405	0/1:107:65,42:65:2340:42:1499:-43.457,0,-169.975	0/0:135:131,4:131:4696:4:144:0,-31.8787,-401.538	0/1:36:27,9:27:972:9:324:-7.06476,0,-73.4999	0/0:53:53,0:53:1900:0:0:0,-15.9546,-164.714	0/1:105:57,48:57:2040:48:1715:-54.4548,0,-146.757	0/1:138:52,86:52:1868:86:3062:-112.62,0,-122.424	0/0:41:41,0:41:1472:0:0:0,-12.3422,-127.678	0/0:40:40,0:40:1432:0:0:0,-12.0412,-124.382	0/0:43:43,0:43:1521:0:0:0,-12.9443,-132.713	0/1:13:8,5:8:284:5:180:-5.41585,0,-21.2984	0/0:115:115,0:115:4103:0:0:0,-34.6184,-356.429	0/1:67:34,33:34:1224:33:1184:-45.0389,0,-86.4402	0/0:67:67,0:67:2366:0:0:0,-20.169,-204.065	0/0:63:63,0:63:2268:0:0:0,-18.9649,-196.164	0/1:136:57,79:57:2044:79:2817:-114.132,0,-137.486	0/1:60:39,21:39:1404:21:747:-23.3259,0,-103.787	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.31938	0/0:70:70,0:70:2486:0:0:0,-21.0721,-213.508	0/0:113:113,0:113:4052:0:0:0,-34.0164,-351.581	0/0:156:156,0:156:5567:0:0:0,-46.9607,-484.944	0/0:66:66,0:66:2372:0:0:0,-19.868,-206.765	0/0:62:62,0:62:2204:0:0:0,-18.6639,-193.122	0/1:39:22,17:22:779:17:584:-18.9527,0,-56.8501	0/0:117:117,0:117:4167:0:0:0,-35.2205,-363.904	0/1:20:14,6:14:504:6:216:-5.98673,0,-38.1842	0/1:59:30,29:30:1057:29:1027:-39.6841,0,-74.7149	0/0:80:80,0:80:2853:0:0:0,-24.0824,-247.414	0/0:24:24,0:24:864:0:0:0,-7.22472,-73.5267	0/1:64:35,29:35:1237:29:1021:-37.5856,0,-87.5268	0/1:58:20,38:20:712:38:1368:-51.0371,0,-45.2122	0/0:62:62,0:62:2215:0:0:0,-18.6639,-194.358	0/0:109:109,0:109:3897:0:0:0,-32.8123,-340.715
chr04	17761273	.	TCTC	CCTT,TCTT	292252	PASS	AB=0.604143,0.391353;ABP=421.377,458.342;AC=144,44;AF=0.765957,0.234043;AN=188;AO=9605,1747;CIGAR=1X2M1X,3M1X;DP=11413;DPB=11415.5;DPRA=122.71,0.817526;EPP=20860,3796.57;EPPR=5.18177;GTI=7;LEN=4,1;MEANALT=2.08602,2.40816;MQM=55.792,59.9782;MQMR=56;NS=94;NUMALT=2;ODDS=2.59499;PAIRED=0,0;PAIREDR=0;PAO=5,5;PQA=155.5,155.5;PQR=0;PRO=0;QA=330306,61875;QR=36;RO=1;RPL=4585,2;RPP=45.7898,3779.22;RPPR=5.18177;RPR=5020,1745;RUN=1,1;SAF=4585,2;SAP=45.7898,3779.22;SAR=5020,1745;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:65:0,27,38:0:0:27,38:936,1360:-185.952,-111.261,-103.134,-75.0384,0,-63.5993	1/1:141:0,138,0:0:0:138,0:4762,0:-422.549,-41.5421,0,-422.549,-41.5421,-422.549	1/1:181:0,177,2:0:0:177,2:6055,72:-539.652,-53.2823,0,-533.777,-47.405,-533.175	1/1:264:0,263,0:0:0:263,0:9146,0:-822.407,-79.1709,0,-822.407,-79.1709,-822.407	1/1:76:0,76,0:0:0:76,0:2642,0:-236.248,-22.8783,0,-236.248,-22.8783,-236.248	1/1:50:0,49,0:0:0:49,0:1709,0:-152.482,-14.7505,0,-152.482,-14.7505,-152.482	1/2:90:0,51,39:0:0:51,39:1779,1400:-259.22,-114.559,-99.2065,-145.016,0,-133.276	1/1:210:0,208,0:0:0:208,0:7227,0:-637.105,-62.6142,0,-637.105,-62.6142,-637.105	1/2:110:0,46,64:0:0:46,64:1610,2259:-313.415,-184.189,-170.341,-129.458,0,-110.192	1/1:141:0,140,1:0:0:140,1:4744,36:-425.118,-42.1442,0,-422.181,-38.847,-421.88	1/1:135:0,133,0:0:0:133,0:4533,0:-407.22,-40.037,0,-407.22,-40.037,-407.22	1/1:182:0,179,0:0:0:179,0:6127,0:-546.169,-53.8844,0,-546.169,-53.8844,-546.169	1/1:159:0,159,0:0:0:159,0:5484,0:-486.699,-47.8638,0,-486.699,-47.8638,-486.699	1/1:131:0,131,0:0:0:131,0:4481,0:-403.073,-39.4349,0,-403.073,-39.4349,-403.073	1/1:137:0,135,0:0:0:135,0:4609,0:-414.375,-40.6391,0,-414.375,-40.6391,-414.375	1/2:96:0,63,33:0:0:63,33:2147,1176:-269.984,-96.2138,-77.2489,-174.12,0,-164.186	1/1:83:0,83,0:0:0:83,0:2821,0:-249.104,-24.9855,0,-249.104,-24.9855,-249.104	1/2:63:0,49,14:0:0:49,14:1673,492:-173.542,-40.3979,-25.6475,-133.492,0,-129.278	1/2:60:0,31,28:0:0:31,28:1071,983:-165.973,-80.0033,-70.6713,-85.966,0,-77.5372	1/2:144:0,100,43:0:0:100,43:3427,1527:-402.144,-124.569,-94.4664,-277.722,0,-264.778	1/2:221:0,110,110:0:0:110,110:3788,3882:-623.235,-316.158,-283.044,-307.125,0,-274.012	1/2:60:0,33,27:0:0:33,27:1154,939:-167.296,-76.6949,-66.7609,-90.9444,0,-82.8166	1/2:69:0,32,37:0:0:32,37:1105,1324:-198.081,-108.324,-98.691,-90.1079,0,-78.9698	1/1:111:0,109,2:0:0:109,2:3740,72:-335.573,-32.8123,0,-329.698,-26.5776,-329.096	1/1:107:0,107,0:0:0:107,0:3736,0:-336.026,-32.2102,0,-336.026,-32.2102,-336.026	1/2:246:0,149,96:0:0:149,96:5134,3402:-694.124,-277.196,-232.343,-416.978,0,-388.079	1/2:244:0,148,92:0:0:148,92:5006,3249:-669.77,-264.68,-220.127,-405.179,0,-377.484	1/1:83:0,83,0:0:0:83,0:2855,0:-255.458,-24.9855,0,-255.458,-24.9855,-255.458	1/2:211:0,135,75:0:0:135,75:4690,2672:-598.863,-217.789,-177.15,-381.068,0,-358.491	1/2:99:0,64,35:0:0:64,35:2212,1255:-282.317,-102.719,-83.4533,-179.952,0,-169.415	1/1:107:0,105,1:0:0:105,1:3658,36:-328.947,-31.6082,0,-326.009,-28.6635,-325.708	1/2:11:0,9,2:0:0:9,2:315,63:-31.0198,-5.38109,-2.67182,-25.9599,0,-25.3578	1/2:10:0,8,2:0:0:8,2:276,63:-27.8236,-5.38109,-2.97285,-22.7634,0,-22.1613	1/1:3:0,3,0:0:0:3,0:107,0:-9.33302,-0.90309,0,-9.33302,-0.90309,-9.33302	1/1:8:0,8,0:0:0:8,0:279,0:-25.25,-2.40824,0,-25.25,-2.40824,-25.25	1/1:13:0,13,0:0:0:13,0:452,0:-40.9216,-3.91339,0,-40.9216,-3.91339,-40.9216	1/1:437:0,434,0:0:0:434,0:14666,0:-1317.13,-130.647,0,-1317.13,-130.647,-1317.13	1/1:135:0,134,0:0:0:134,0:4638,0:-416.079,-40.338,0,-416.079,-40.338,-416.079	1/2:80:0,50,30:0:0:50,30:1685,1064:-221.193,-86.9826,-71.9311,-134.498,0,-125.468	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:177:0,120,56:0:0:120,56:4146,1986:-497.747,-161.868,-125.745,-335.943,0,-319.085	1/1:74:0,72,0:0:0:72,0:2446,0:-219.802,-21.6742,0,-219.802,-21.6742,-219.802	1/2:201:0,97,104:0:0:97,104:3368,3689:-573.809,-300.621,-271.421,-273.48,0,-242.173	1/2:120:1,84,35:1:36:84,35:2844,1218:-324.932,-96.0911,-73.74,-226.192,0,-218.591	1/1:134:0,133,0:0:0:133,0:4506,0:-404.333,-40.037,0,-404.333,-40.037,-404.333	1/2:108:0,48,60:0:0:48,60:1636,2136:-307.094,-174.446,-159.997,-132.995,0,-114.933	1/2:96:0,64,32:0:0:64,32:2234,1128:-270.958,-92.1934,-72.9275,-179.114,0,-169.481	1/2:165:0,119,46:0:0:119,46:4129,1635:-468.951,-133.591,-97.7681,-335.713,0,-321.866	1/1:152:0,150,0:0:0:150,0:5105,0:-458.916,-45.1545,0,-458.916,-45.1545,-458.916	1/1:188:0,187,1:0:0:187,1:6419,36:-577.033,-56.2926,0,-574.095,-52.9954,-573.794	1/1:125:0,124,0:0:0:124,0:4271,0:-383.68,-37.3277,0,-383.68,-37.3277,-383.68	1/1:17:0,16,0:0:0:16,0:549,0:-49.3498,-4.81648,0,-49.3498,-4.81648,-49.3498	1/1:205:0,203,1:0:0:203,1:7125,36:-634.577,-61.1091,0,-631.639,-58.108,-631.338	1/2:52:0,19,33:0:0:19,33:669,1148:-146.442,-93.6919,-87.9723,-53.0945,0,-43.1606	1/1:9:0,9,0:0:0:9,0:312,0:-28.0164,-2.70927,0,-28.0164,-2.70927,-28.0164	1/2:152:0,90,61:0:0:90,61:3105,2184:-430.11,-178.267,-1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chr04	17761329	.	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chr04	17937484	.	G	C	33929.9	PASS	AB=0.516541;ABP=12.1334;AC=44;AF=0.234043;AN=188;AO=1999;CIGAR=1X;DP=8005;DPB=8005;DPRA=1.14805;EPP=4343.78;EPPR=13038.4;GTI=1;LEN=1;MEANALT=1.04167;MQM=59.8899;MQMR=59.9855;NS=94;NUMALT=1;ODDS=4.68386;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71535;QR=213846;RO=6003;RPL=0;RPP=4343.78;RPPR=13038.4;RPR=1999;RUN=1;SAF=1999;SAP=4343.78;SAR=0;SRF=6003;SRP=13038.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:26,24:26:913:24:860:-62.6622,0,-67.4325	0/0:149:147,2:147:5234:2:57:0,-39.4402,-465.784	0/0:139:139,0:139:4976:0:0:0,-41.8432,-447.989	0/0:183:183,0:183:6458:0:0:0,-55.0885,-581.307	0/0:72:69,3:69:2468:3:104:0,-11.9714,-212.671	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:36:23,13:23:816:13:468:-31.6226,0,-62.9246	0/0:152:151,0:151:5371:0:0:0,-45.4555,-483.16	0/1:53:23,30:23:828:30:1080:-81.5587,0,-58.8895	0/0:75:75,0:75:2669:0:0:0,-22.5772,-240.454	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.517	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.554	0/0:88:88,0:88:3133:0:0:0,-26.4906,-282.195	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.684	0/1:52:29,23:29:1036:23:828:-59.1906,0,-77.9004	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.78	0/1:23:13,10:13:449:10:360:-25.8206,0,-33.8138	0/1:42:21,21:21:756:21:743:-54.5497,0,-55.724	0/1:202:111,91:111:3957:91:3248:-231.733,0,-295.513	0/1:114:64,50:64:2285:50:1782:-126.317,0,-171.593	0/1:108:30,78:30:1064:78:2767:-216.762,0,-63.5604	0/1:80:55,25:55:1957:25:896:-56.878,0,-152.275	0/0:31:29,2:29:1025:2:72:0,-2.50005,-85.7288	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/1:166:92,74:92:3289:74:2633:-187.16,0,-246.257	0/1:226:124,102:124:4396:102:3634:-259.226,0,-327.777	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:230:108,122:108:3868:122:4376:-324.702,0,-279.022	0/1:155:80,75:80:2872:75:2688:-195.505,0,-212.057	0/0:74:74,0:74:2622:0:0:0,-22.2762,-236.225	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:135:135,0:135:4788:0:0:0,-40.639,-431.073	0/0:139:139,0:139:4976:0:0:0,-41.8432,-447.987	0/1:69:43,26:43:1540:26:932:-63.4278,0,-118.122	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:130:59,71:59:2062:71:2548:-190.436,0,-146.714	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:143:79,64:79:2836:64:2279:-162.252,0,-212.431	0/1:58:31,27:31:1116:27:972:-70.3382,0,-83.292	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:102:49,53:49:1756:53:1900:-140.573,0,-127.619	0/1:69:40,29:40:1402:29:1044:-73.4991,0,-105.702	0/1:140:47,93:47:1680:93:3324:-256.862,0,-109.343	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/0:163:163,0:163:5813:0:0:0,-49.0679,-523.284	0/0:128:128,0:128:4539:0:0:0,-38.5318,-408.676	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:127:127,0:127:4526:0:0:0,-38.2308,-407.506	0/1:96:36,60:36:1292:60:2160:-165.739,0,-87.6849	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:123:70,53:70:2508:53:1900:-134.251,0,-188.946	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/1:21:10,10:10:356:10:360:-26.3639,0,-26.0012	0/1:73:27,46:27:964:46:1652:-126.864,0,-65.1016	0/0:125:122,2:122:4322:2:72:0,-30.8508,-382.32	0/0:11:11,0:11:380:0:0:0,-3.31133,-34.532	0/1:95:40,55:40:1424:55:1971:-149.067,0,-99.8596	0/0:142:140,2:140:4993:2:72:0,-35.9095,-442.681	0/1:77:46,31:46:1629:31:1116:-77.5724,0,-123.718	0/0:96:96,0:96:3410:0:0:0,-28.8989,-307.113	0/1:124:76,48:76:2697:48:1720:-117.758,0,-205.646	0/1:298:70,228:70:2497:228:8166:-645.242,0,-135.274	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.023	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:20:10,10:10:345:10:356:-26.3606,0,-25.3602	0/0:66:66,0:66:2345:0:0:0,-19.868,-211.308	0/1:55:26,29:26:932:29:1039:-77.267,0,-67.6422	0/0:125:125,0:125:4438:0:0:0,-37.6287,-399.274	0/0:151:151,0:151:5416:0:0:0,-45.4555,-487.569	0/1:131:61,70:61:2169:70:2508:-186.529,0,-156.04	0/1:92:51,41:51:1816:41:1468:-104.721,0,-136.027	0/1:31:15,16:15:536:16:572:-42.4815,0,-39.2429	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.291	0/0:106:106,0:106:3773:0:0:0,-31.9092,-339.769	0/0:163:163,0:163:5799:0:0:0,-49.0679,-522.023	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:62:62,0:62:2197:0:0:0,-18.6639,-197.994	0/1:31:16,15:16:572:15:536:-39.2429,0,-42.4815	0/0:137:137,0:137:4878:0:0:0,-41.2411,-439.172	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:38:16,22:16:564:22:788:-59.8057,0,-39.6512	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.835	0/0:85:85,0:85:3022:0:0:0,-25.5875,-272.208	0/1:150:68,82:68:2417:82:2932:-218.951,0,-172.63	0/1:65:34,31:34:1212:31:1116:-81.1847,0,-89.8194	0/0:78:78,0:78:2777:0:0:0,-23.4803,-250.17	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.337
chr04	18166320	.	T	C	66197.3	PASS	AB=0.63165;ABP=667.956;AC=47;AF=0.252688;AN=186;AO=2815;CIGAR=1X;DP=7715;DPB=7715;DPRA=1.42032;EPP=5849.41;EPPR=10448.7;GTI=8;LEN=1;MEANALT=1.01923;MQM=53.9538;MQMR=59.9837;NS=93;NUMALT=1;ODDS=1.55802;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99383;QR=174161;RO=4898;RPL=1432;RPP=4.86242;RPPR=10448.7;RPR=1383;RUN=1;SAF=1401;SAP=3.14067;SAR=1414;SRF=0;SRP=10638.9;SRR=4898;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:76:30,46:30:1072:46:1620:-121.791,0,-73.6864	0/0:80:77,3:77:2726:3:108:0,-14.0813,-235.58	0/0:125:125,0:125:4437:0:0:0,-37.6287,-399.49	0/0:153:153,0:153:5410:0:0:0,-46.0576,-487.035	0/1:51:45,6:45:1572:6:216:-4.32413,0,-126.415	0/0:50:49,1:49:1722:1:36:0,-11.4532,-151.663	0/1:125:46,79:46:1636:79:2789:-212.905,0,-109.9	0/0:83:83,0:83:2938:0:0:0,-24.9855,-264.644	0/1:158:52,105:52:1860:105:3719:-284.688,0,-120.058	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:82:82,0:82:2916:0:0:0,-24.6845,-262.677	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:70:15,55:15:532:55:1937:-152.863,0,-27.141	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:49:13,36:13:468:36:1284:-100.601,0,-27.7092	0/1:46:13,33:13:464:33:1147:-89.2369,0,-28.2501	0/1:139:62,77:62:2201:77:2752:-205.187,0,-156.511	0/1:177:62,115:62:2208:115:4051:-309.524,0,-145.703	0/1:65:16,49:16:576:49:1724:-135.305,0,-32.608	0/1:126:54,72:54:1925:72:2521:-187.842,0,-135.595	0/1:82:72,10:72:2576:10:351:-7.1744,0,-207.405	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/1:210:72,138:72:2526:138:4849:-372.593,0,-164.374	0/1:265:108,157:108:3842:157:5527:-414.172,0,-266.202	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:252:119,133:119:4209:133:4696:-345.233,0,-303.135	0/1:107:44,63:44:1553:63:2255:-169.769,0,-107.85	0/0:100:100,0:100:3561:0:0:0,-30.103,-320.653	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:21:8,13:8:288:13:456:-34.9163,0,-19.9458	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:143:143,0:143:5080:0:0:0,-43.0473,-457.345	0/0:71:71,0:71:2512:0:0:0,-21.3731,-226.334	0/1:95:21,74:21:747:74:2584:-202.249,0,-38.9565	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:110:50,60:50:1780:60:2120:-157.306,0,-127.37	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:113:42,71:42:1485:71:2544:-193.041,0,-99.9261	0/1:133:32,101:32:1121:101:3585:-280.394,0,-61.1587	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:120:46,74:46:1636:74:2612:-198.589,0,-111.405	0/1:112:37,75:37:1317:75:2640:-200.102,0,-85.1145	0/1:127:50,77:50:1776:77:2739:-207.091,0,-121.892	0/0:81:81,0:81:2877:0:0:0,-24.3834,-259.166	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.743	0/0:81:81,0:81:2874:0:0:0,-24.3834,-258.895	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/1:48:29,19:29:1021:19:680:-46.8425,0,-77.7508	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:153:48,105:48:1689:105:3725:-286.847,0,-106.237	0/0:38:37,1:37:1324:1:36:0,-7.84086,-115.864	1/1:8:0,8:0:0:8:284:-25.8786,-2.40824,0	0/1:15:5,10:5:180:10:351:-27.3579,0,-12.0366	0/1:87:26,61:26:913:61:2174:-168.634,0,-56.2944	0/0:69:68,1:68:2420:1:36:0,-17.1728,-214.458	.:.:.:.:.:.:.:.	0/1:132:47,85:47:1677:85:3032:-232.893,0,-111.479	0/0:115:112,3:112:3978:3:108:0,-24.5717,-348.163	0/1:60:28,32:28:996:32:1129:-83.5912,0,-71.836	0/0:53:53,0:53:1880:0:0:0,-15.9546,-169.479	0/1:155:42,113:42:1504:113:3975:-310.469,0,-88.9949	0/1:127:37,90:37:1320:90:3206:-248.502,0,-80.8711	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:69:68,1:68:2420:1:32:0,-17.5718,-214.857	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:16:6,10:6:208:10:360:-27.8724,0,-14.2426	0/0:121:121,0:121:4305:0:0:0,-36.4246,-387.628	0/1:79:33,46:33:1168:46:1643:-122.343,0,-81.6458	0/0:147:147,0:147:5215:0:0:0,-44.2514,-469.488	0/0:109:108,1:108:3868:1:36:0,-29.214,-344.717	0/1:116:45,71:45:1597:71:2523:-189.603,0,-109.099	0/1:103:32,71:32:1125:71:2466:-190.329,0,-70.5499	0/1:14:6,8:6:216:8:273:-20.541,0,-15.5761	0/0:68:67,0:67:2373:0:0:0,-20.169,-213.467	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.065	0/0:156:156,0:156:5538:0:0:0,-46.9607,-498.547	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:99:15,84:15:532:84:2934:-233.668,0,-18.4111	0/0:97:97,0:97:3457:0:0:0,-29.1999,-311.342	0/1:43:13,30:13:456:30:1035:-80.262,0,-28.4289	0/1:95:32,63:32:1144:63:2202:-168.186,0,-74.6717	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:119:38,81:38:1351:81:2835:-218.909,0,-86.067	0/1:122:33,89:33:1173:89:3122:-243.062,0,-69.1499	0/0:107:107,0:107:3790:0:0:0,-32.2102,-341.298	0/0:103:103,0:103:3680:0:0:0,-31.0061,-331.403
chr04	18189521	.	T	C	95206.1	PASS	AB=0.531412;ABP=69.3098;AC=44;AF=0.234043;AN=188;AO=4145;CIGAR=1X;DP=16083;DPB=16083;DPRA=1.23703;EPP=8925.76;EPPR=25811;GTI=3;LEN=1;MEANALT=1.08772;MQM=59.9889;MQMR=59.9931;NS=94;NUMALT=1;ODDS=2.54163;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147106;QR=423230;RO=11929;RPL=2101;RPP=4.71238;RPPR=4.51772;RPR=2044;RUN=1;SAF=2110;SAP=5.95711;SAR=2035;SRF=6017;SRP=5.01721;SRR=5912;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:137:58,79:58:2018:79:2802:-211.178,0,-140.649	0/0:189:189,0:189:6726:0:0:0,-56.8947,-605.419	0/0:288:288,0:288:10239:0:0:0,-86.6966,-921.445	0/0:259:257,2:257:9174:2:72:0,-71.13,-818.798	0/0:178:177,1:177:6289:1:36:0,-49.9851,-562.507	0/0:91:90,1:90:3212:1:36:0,-23.7955,-285.705	0/1:159:69,90:69:2460:90:3190:-239.458,0,-173.791	0/0:253:251,2:251:8901:2:72:0,-69.3239,-794.245	0/1:296:165,131:165:5864:131:4676:-331.898,0,-438.769	0/0:194:194,0:194:6875:0:0:0,-58.3998,-618.825	0/0:141:141,0:141:5006:0:0:0,-42.4452,-450.691	0/0:185:184,1:184:6474:1:36:0,-52.0923,-579.153	0/0:188:188,0:188:6674:0:0:0,-56.5936,-600.743	0/0:137:137,0:137:4879:0:0:0,-41.2411,-439.265	0/0:148:148,0:148:5268:0:0:0,-44.5524,-474.256	0/1:126:68,58:68:2428:58:2052:-146.913,0,-180.846	0/0:113:113,0:113:3995:0:0:0,-34.0164,-359.744	0/1:103:44,58:44:1555:58:2042:-153.131,0,-109.323	0/1:90:38,52:38:1348:52:1820:-136.983,0,-94.5276	0/1:296:106,190:106:3766:190:6762:-519.548,0,-250.036	0/1:300:145,155:145:5133:155:5515:-406.168,0,-371.805	0/1:159:37,122:37:1307:122:4342:-343.093,0,-70.067	0/1:179:77,101:77:2732:101:3570:-267.712,0,-192.327	0/0:202:191,11:191:6836:11:396:0,-24.8253,-579.328	0/0:178:176,2:176:6227:2:72:0,-46.7466,-553.693	0/1:467:212,254:212:7508:254:9016:-670.93,0,-535.278	0/1:417:196,220:196:6977:220:7746:-571.733,0,-502.549	0/0:85:85,0:85:2995:0:0:0,-25.5875,-269.785	0/1:458:240,218:240:8542:218:7723:-557.237,0,-630.913	0/1:153:69,84:69:2464:84:2965:-221.024,0,-175.957	0/0:174:174,0:174:6122:0:0:0,-52.3792,-551.085	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6551	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:396:396,0:396:14042:0:0:0,-119.208,-1263.57	0/0:214:214,0:214:7635:0:0:0,-64.4204,-687.19	0/1:140:77,63:77:2688:63:2212:-157.199,0,-200.019	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:160:64,96:64:2275:96:3422:-260.027,0,-156.847	0/0:79:79,0:79:2812:0:0:0,-23.7814,-253.321	0/1:340:151,189:151:5360:189:6690:-499.828,0,-379.626	0/1:226:108,118:108:3795:118:4196:-309.789,0,-273.719	0/0:133:132,0:132:4641:0:0:0,-39.736,-417.5	0/1:136:72,64:72:2550:64:2244:-161.264,0,-188.81	0/1:224:108,116:108:3856:116:4129:-304.361,0,-279.806	0/1:266:123,143:123:4360:143:5094:-378.528,0,-312.502	0/0:162:161,1:161:5704:1:36:0,-45.1686,-509.885	0/0:199:196,3:196:6985:3:108:0,-49.8298,-618.641	0/0:201:200,1:200:7088:1:36:0,-56.9088,-634.389	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:217:217,0:217:7722:0:0:0,-65.3235,-695.018	0/1:75:47,28:47:1684:28:1008:-68.4591,0,-129.27	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:214:102,112:102:3627:112:4008:-296.489,0,-262.216	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:12:8,4:8:288:4:135:-8.87015,0,-22.655	0/1:19:9,10:9:300:10:343:-25.481,0,-21.6025	0/1:165:65,100:65:2294:100:3539:-269.05,0,-157.051	0/0:201:200,1:200:7053:1:36:0,-56.9088,-631.24	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:300:173,125:173:6127:125:4464:-311.862,0,-461.466	0/0:348:345,3:345:12286:3:108:0,-94.6833,-1095.51	0/1:158:82,76:82:2923:76:2702:-195.861,0,-215.742	0/0:152:151,0:151:5400:0:0:0,-45.4555,-485.92	0/1:308:151,157:151:5367:157:5600:-411.406,0,-390.449	0/1:182:57,125:57:2020:125:4416:-342.823,0,-127.286	0/0:82:82,0:82:2890:0:0:0,-24.6845,-260.335	0/0:91:91,0:91:3219:0:0:0,-27.3937,-289.932	0/0:135:135,0:135:4793:0:0:0,-40.639,-431.529	0/1:41:24,17:24:848:17:608:-42.7098,0,-64.2974	0/0:138:137,1:137:4865:1:36:0,-37.9439,-434.407	0/1:140:70,70:70:2467:70:2507:-183.737,0,-180.138	0/0:299:299,0:299:10573:0:0:0,-90.008,-951.419	0/0:268:268,0:268:9537:0:0:0,-80.676,-858.282	0/1:221:100,121:100:3564:121:4299:-320.558,0,-254.442	0/1:215:109,106:109:3884:106:3799:-277.385,0,-285.035	0/1:24:7,17:7:248:17:612:-48.1887,0,-15.4395	0/0:215:213,2:213:7537:2:72:0,-57.8847,-671.542	0/0:159:159,0:159:5668:0:0:0,-47.8638,-510.243	0/0:316:316,0:316:11249:0:0:0,-95.1255,-1012.3	0/0:144:144,0:144:5090:0:0:0,-43.3483,-458.25	0/0:130:130,0:130:4554:0:0:0,-39.1339,-410.034	0/1:157:83,74:83:2941:74:2618:-188.606,0,-217.663	0/0:320:320,0:320:11350:0:0:0,-96.3296,-1021.39	0/1:63:38,25:38:1351:25:892:-61.6348,0,-102.925	0/1:153:70,83:70:2492:83:2926:-217.518,0,-178.476	0/0:148:148,0:148:5241:0:0:0,-44.5524,-471.825	0/0:74:74,0:74:2627:0:0:0,-22.2762,-236.675	0/1:232:119,113:119:4222:113:3956:-286.396,0,-310.324	0/1:189:59,130:59:2046:130:4630:-359.96,0,-127.515	0/0:162:162,0:162:5721:0:0:0,-48.7669,-515.012	0/0:227:226,0:226:7985:0:0:0,-68.0328,-718.326
chr04	18308986	.	TC	CC	96236.3	PASS	AB=0.477112;ABP=17.1256;AC=145;AF=0.771277;AN=188;AO=4638;CIGAR=1X1M;DP=6282;DPB=6282;DPRA=0;EPP=10048.3;EPPR=3529.49;GTI=0;LEN=1;MEANALT=1.14894;MQM=53.9219;MQMR=59.9951;NS=94;NUMALT=1;ODDS=3.05043;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164889;QR=57370;RO=1628;RPL=3;RPP=10048.3;RPPR=3529.49;RPR=4635;RUN=1;SAF=0;SAP=10074.3;SAR=4638;SRF=0;SRP=3538.17;SRR=1628;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:14,9:14:483:9:324:-22.508,0,-36.8727	1/1:65:0,65:0:0:65:2287:-204.865,-19.567,0	1/1:60:0,60:0:0:60:2132:-191.661,-18.0618,0	1/1:119:0,119:0:0:119:4248:-381.872,-35.8226,0	1/1:28:1,27:1:36:27:972:-83.9427,-4.83057,0	1/1:32:0,32:0:0:32:1109:-99.6615,-9.63296,0	0/1:84:48,36:48:1703:36:1277:-89.8353,0,-128.268	1/1:161:0,161:0:0:161:5767:-517.242,-48.4658,0	0/1:64:41,23:41:1440:23:809:-53.6717,0,-110.627	1/1:131:0,130:0:0:130:4615:-414.285,-39.1339,0	1/1:38:0,38:0:0:38:1341:-120.704,-11.4391,0	1/1:59:0,59:0:0:59:2081:-186.672,-17.7608,0	1/1:27:0,27:0:0:27:964:-86.8231,-8.12781,0	1/1:50:0,50:0:0:50:1741:-156.705,-15.0515,0	1/1:32:0,32:0:0:32:1132:-102.015,-9.63296,0	0/1:29:16,13:16:574:13:451:-32.1178,0,-43.2644	1/1:26:0,26:0:0:26:920:-82.9088,-7.82678,0	0/1:34:15,19:15:518:19:672:-50.386,0,-36.7101	0/1:70:30,40:30:1074:40:1432:-107.369,0,-75.9009	0/1:93:46,47:46:1613:47:1680:-123.094,0,-117.46	0/1:117:61,56:61:2161:56:1996:-143.876,0,-159.535	0/1:48:30,18:30:1076:18:644:-43.8253,0,-82.7036	0/1:62:26,36:26:921:36:1292:-97.7417,0,-64.5424	1/1:48:4,41:4:142:41:1464:-118.378,-0.744467,0	1/1:44:0,44:0:0:44:1572:-141.408,-13.2453,0	0/1:341:181,160:181:6402:160:5731:-412.581,0,-473.62	0/1:176:75,100:75:2595:100:3521:-263.165,0,-180.77	1/1:18:0,18:0:0:18:635:-57.2714,-5.41854,0	0/1:107:58,49:58:2038:49:1752:-125.711,0,-151.479	0/1:86:47,39:47:1666:39:1400:-100.065,0,-124.337	1/1:95:0,95:0:0:95:3384:-303.834,-28.5979,0	0/1:11:5,6:5:172:6:216:-16.4511,0,-12.5061	0/1:30:20,10:20:702:10:360:-23.5408,0,-54.472	1/1:9:0,9:0:0:9:305:-27.7158,-2.70927,0	1/1:15:0,15:0:0:15:536:-48.4544,-4.51545,0	1/1:23:0,23:0:0:23:824:-74.3,-6.92369,0	1/1:127:0,127:0:0:127:4488:-403.575,-38.2308,0	1/1:271:0,270:0:0:270:9611:-861.696,-81.2781,0	0/1:44:20,24:20:716:24:856:-63.909,0,-51.5226	0/1:7:4,3:4:144:3:108:-7.82424,0,-11.2064	0/1:44:11,33:11:392:33:1184:-93.2197,0,-22.3749	1/1:35:0,35:0:0:35:1225:-110.132,-10.5361,0	0/1:57:32,24:32:1137:24:860:-60.4935,0,-85.5187	0/1:69:38,31:38:1351:31:1112:-79.4569,0,-101.118	1/1:41:0,41:0:0:41:1436:-129.361,-12.3422,0	0/1:98:55,43:55:1924:43:1531:-108.541,0,-143.931	0/1:78:43,35:43:1538:35:1260:-89.7572,0,-115.233	0/1:105:44,61:44:1519:61:2165:-163.11,0,-105.388	1/1:82:0,81:0:0:81:2900:-260.44,-24.3834,0	1/1:182:0,181:0:0:181:6474:-580.863,-54.4864,0	1/1:22:0,22:0:0:22:777:-70.1133,-6.62266,0	1/1:10:0,10:0:0:10:350:-31.773,-3.0103,0	1/1:65:0,65:0:0:65:2298:-206.487,-19.567,0	0/1:21:13,8:13:453:8:288:-19.9384,0,-34.7791	1/1:24:0,24:0:0:24:864:-77.8751,-7.22472,0	0/1:80:37,43:37:1285:43:1533:-113.327,0,-91.8654	1/1:24:0,24:0:0:24:851:-76.7431,-7.22472,0	0/1:9:8,1:8:286:1:36:-0.887999,0,-23.3762	0/1:20:11,9:11:385:9:316:-22.7511,0,-28.9636	0/1:53:27,26:27:946:26:921:-66.7942,0,-69.4992	1/1:69:0,69:0:0:69:2451:-220.34,-20.7711,0	1/1:8:0,8:0:0:8:288:-26.2485,-2.40824,0	0/1:106:33,72:33:1142:72:2588:-200.781,0,-71.2526	1/1:141:3,138:3:97:138:4944:-435.257,-33.3952,0	0/1:42:33,9:33:1169:9:324:-16.6299,0,-92.8723	1/1:73:0,73:0:0:73:2616:-235.092,-21.9752,0	0/1:141:75,66:75:2618:66:2317:-165.849,0,-193.42	0/1:112:61,51:61:2142:51:1815:-129.708,0,-159.33	1/1:16:0,16:0:0:16:559:-50.5279,-4.81648,0	1/1:30:0,30:0:0:30:1076:-96.907,-9.0309,0	1/1:64:1,63:1:36:63:2246:-198.58,-15.6676,0	0/1:9:4,5:4:142:5:180:-13.8309,0,-10.4199	1/1:83:0,81:0:0:81:2859:-256.064,-24.3834,0	0/1:52:26,26:26:902:26:895:-64.4321,0,-65.8381	1/1:101:0,101:0:0:101:3593:-322.319,-30.404,0	1/1:49:0,49:0:0:49:1760:-158.539,-14.7505,0	0/1:140:73,66:73:2592:66:2356:-168.21,0,-191.337	0/1:135:87,48:87:3068:48:1699:-111.865,0,-235.709	0/1:21:11,10:11:394:10:360:-26.3403,0,-29.4799	1/1:42:1,40:1:36:40:1430:-124.781,-9.10353,0	1/1:68:0,66:0:0:66:2350:-210.591,-19.868,0	1/1:140:0,140:0:0:140:4978:-447.053,-42.1442,0	1/1:61:0,61:0:0:61:2146:-193.166,-18.3628,0	1/1:25:0,25:0:0:25:881:-79.4049,-7.52575,0	0/1:42:21,21:21:735:21:720:-52.4145,0,-53.8273	1/1:88:0,88:0:0:88:3085:-277.491,-26.4906,0	0/1:42:21,21:21:756:21:744:-54.4839,0,-55.724	0/1:59:25,34:25:894:34:1199:-89.9324,0,-63.0196	1/1:33:0,33:0:0:33:1168:-104.913,-9.93399,0	1/1:26:0,26:0:0:26:925:-82.9337,-7.82678,0	0/1:59:30,29:30:1057:29:1028:-74.8005,0,-77.6787	0/1:82:62,20:62:2198:20:716:-39.9535,0,-173.4	1/1:45:0,45:0:0:45:1604:-144.136,-13.5464,0	1/1:55:0,55:0:0:55:1959:-176.367,-16.5567,0
chr04	18308995	.	T	C	125284	PASS	AB=0.488655;ABP=6.40996;AC=145;AF=0.771277;AN=188;AO=4672;CIGAR=1X;DP=6239;DPB=6239;DPRA=0;EPP=18.4058;EPPR=3.41232;GTI=0;LEN=1;MEANALT=1.06383;MQM=53.9069;MQMR=60;NS=94;NUMALT=1;ODDS=4.10989;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166385;QR=55443;RO=1561;RPL=2427;RPP=18.4058;RPPR=3.41232;RPR=2245;RUN=1;SAF=0;SAP=10148.1;SAR=4672;SRF=0;SRP=3392.68;SRR=1561;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:14,9:14:496:9:324:-22.508,0,-38.0506	1/1:67:0,67:0:0:67:2336:-208.618,-20.169,0	1/1:60:0,60:0:0:60:2148:-193.09,-18.0618,0	1/1:119:0,119:0:0:119:4230:-380.298,-35.8226,0	1/1:28:1,27:1:36:27:953:-82.2353,-4.83057,0	1/1:31:0,31:0:0:31:1112:-99.922,-9.33193,0	0/1:83:48,35:48:1694:35:1256:-88.2506,0,-127.757	1/1:167:0,167:0:0:167:5964:-534.727,-50.272,0	0/1:64:39,25:39:1392:25:892:-61.1133,0,-106.313	1/1:131:0,130:0:0:130:4608:-413.544,-39.1339,0	1/1:34:0,34:0:0:34:1211:-109.033,-10.235,0	1/1:60:0,60:0:0:60:2136:-191.554,-18.0618,0	1/1:28:0,28:0:0:28:1004:-90.4294,-8.42884,0	1/1:51:0,51:0:0:51:1805:-162.435,-15.3525,0	1/1:33:0,33:0:0:33:1180:-106.321,-9.93399,0	0/1:28:15,13:15:536:13:468:-33.9491,0,-40.146	1/1:26:0,26:0:0:26:932:-83.9759,-7.82678,0	0/1:31:12,19:12:428:19:672:-51.2443,0,-29.5269	0/1:70:30,40:30:1061:40:1428:-107.035,0,-74.7273	0/1:94:44,50:44:1572:50:1781:-131.822,0,-113.475	0/1:113:57,54:57:2044:54:1925:-139.263,0,-150.537	0/1:49:29,20:29:1009:20:716:-49.9996,0,-76.3685	0/1:61:24,37:24:864:37:1324:-100.921,0,-59.7197	1/1:46:3,43:3:104:43:1529:-127.453,-4.14457,0	1/1:45:0,45:0:0:45:1593:-143.295,-13.5464,0	0/1:337:177,160:177:6272:160:5699:-411.033,0,-463.128	0/1:168:71,97:71:2529:97:3433:-257.726,0,-177.287	1/1:17:0,17:0:0:17:612:-55.2092,-5.11751,0	0/1:107:56,51:56:1985:51:1813:-131.191,0,-146.712	0/1:82:44,38:44:1561:38:1353:-97.0846,0,-116.095	1/1:94:0,94:0:0:94:3345:-299.619,-28.2968,0	0/1:10:4,6:4:144:6:212:-16.3892,0,-10.3033	0/1:32:19,13:19:657:13:456:-31.2517,0,-49.8175	1/1:9:0,9:0:0:9:324:-29.426,-2.70927,0	1/1:16:0,16:0:0:16:568:-51.2631,-4.81648,0	1/1:23:0,22:0:0:22:792:-71.0667,-6.62266,0	1/1:126:0,126:0:0:126:4459:-401.041,-37.9298,0	1/1:271:0,271:0:0:271:9662:-866.643,-81.5791,0	0/1:44:20,24:20:716:24:860:-64.2648,0,-51.5224	0/1:8:4,4:4:144:4:131:-9.55414,0,-10.9054	0/1:41:10,31:10:356:31:1108:-87.2973,0,-20.039	1/1:35:0,35:0:0:35:1248:-111.695,-10.5361,0	0/1:52:29,23:29:1036:23:824:-58.7264,0,-77.9004	0/1:67:35,32:35:1256:32:1146:-83.0787,0,-93.1763	1/1:41:0,41:0:0:41:1448:-130.437,-12.3422,0	0/1:95:53,42:53:1881:42:1489:-105.665,0,-140.969	0/1:80:43,37:43:1525:37:1313:-93.9159,0,-113.459	0/1:104:43,61:43:1532:61:2188:-165.395,0,-106.866	1/1:81:0,81:0:0:81:2908:-261.187,-24.3834,0	1/1:184:0,184:0:0:184:6553:-587.9,-55.3895,0	1/1:23:0,23:0:0:23:813:-73.3482,-6.92369,0	1/1:8:0,8:0:0:8:284:-25.8595,-2.40824,0	1/1:64:0,64:0:0:64:2292:-205.905,-19.2659,0	0/1:21:13,8:13:464:8:288:-19.937,0,-35.7759	1/1:24:0,24:0:0:24:856:-77.1634,-7.22472,0	0/1:78:34,44:34:1190:44:1580:-118.154,0,-83.9207	1/1:25:0,25:0:0:25:900:-80.9902,-7.52575,0	0/1:9:8,1:8:288:1:36:-0.887999,0,-23.5581	0/1:20:11,9:11:396:9:324:-23.477,0,-29.9621	0/1:52:25,27:25:892:27:964:-70.9716,0,-64.9461	1/1:68:0,68:0:0:68:2444:-219.603,-20.47,0	1/1:7:0,7:0:0:7:252:-23.0124,-2.10721,0	0/1:102:30,72:30:1057:72:2535:-197.424,0,-64.7339	1/1:143:3,140:3:108:140:5000:-439.192,-32.9721,0	0/1:40:32,8:32:1148:8:269:-12.3751,0,-91.5886	1/1:72:0,72:0:0:72:2572:-231.194,-21.6742,0	0/1:139:72,67:72:2523:67:2396:-173.242,0,-185.475	0/1:110:60,50:60:2125:50:1788:-127.874,0,-158.404	1/1:15:0,15:0:0:15:540:-48.8457,-4.51545,0	1/1:31:0,31:0:0:31:1108:-99.7236,-9.33193,0	1/1:66:1,65:1:36:65:2320:-205.223,-16.2697,0	0/1:9:4,5:4:140:5:180:-13.8309,0,-10.2353	1/1:88:0,88:0:0:88:3143:-281.272,-26.4906,0	0/1:52:25,27:25:892:27:925:-67.3148,0,-64.9461	1/1:101:0,101:0:0:101:3599:-322.906,-30.404,0	1/1:50:0,49:0:0:49:1756:-157.82,-14.7505,0	0/1:139:68,71:68:2409:71:2548:-185.634,0,-175.222	0/1:129:81,47:81:2881:47:1692:-112.866,0,-220.635	0/1:21:11,10:11:388:10:360:-26.3403,0,-28.9357	1/1:42:1,41:1:36:41:1468:-128.226,-9.04499,0	1/1:68:0,68:0:0:68:2417:-216.907,-20.47,0	1/1:141:0,141:0:0:141:5033:-452.176,-42.4452,0	1/1:63:0,63:0:0:63:2249:-202.393,-18.9649,0	1/1:25:0,25:0:0:25:900:-81.0682,-7.52575,0	0/1:41:21,20:21:756:20:697:-50.5769,0,-56.025	1/1:92:0,92:0:0:92:3265:-293.571,-27.6948,0	0/1:42:21,21:21:752:21:722:-52.5006,0,-55.363	0/1:57:25,32:25:896:32:1135:-84.8339,0,-63.8016	1/1:35:0,35:0:0:35:1217:-109.28,-10.5361,0	1/1:26:0,26:0:0:26:915:-82.3695,-7.82678,0	0/1:56:30,26:30:1060:26:928:-66.8424,0,-78.8536	0/1:81:61,20:61:2176:20:720:-40.6142,0,-171.723	1/1:42:0,42:0:0:42:1495:-134.632,-12.6433,0	1/1:56:0,56:0:0:56:1989:-179.06,-16.8577,0
chr04	18309022	.	A	G	98643.8	PASS	AB=0.487179;ABP=7.40892;AC=145;AF=0.771277;AN=188;AO=4722;CIGAR=1X;DP=6312;DPB=6312;DPRA=0;EPP=10256.7;EPPR=3451.31;GTI=0;LEN=1;MEANALT=1.02128;MQM=53.8388;MQMR=59.9937;NS=94;NUMALT=1;ODDS=4.55133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168646;QR=56831;RO=1588;RPL=4722;RPP=10256.7;RPPR=3451.31;RPR=0;RUN=1;SAF=0;SAP=10256.7;SAR=4722;SRF=0;SRP=3451.31;SRR=1588;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:14,10:14:489:10:352:-24.721,0,-37.1142	1/1:65:0,65:0:0:65:2320:-207.092,-19.567,0	1/1:61:0,61:0:0:61:2172:-195.252,-18.3628,0	1/1:121:0,121:0:0:121:4340:-389.888,-36.4246,0	1/1:28:1,27:1:36:27:972:-83.9427,-4.83057,0	1/1:31:0,31:0:0:31:1101:-98.9375,-9.33193,0	0/1:82:48,34:48:1724:34:1212:-84.6046,0,-130.761	1/1:166:0,166:0:0:166:5936:-532.303,-49.971,0	0/1:65:38,27:38:1368:27:968:-67.5919,0,-103.854	1/1:132:0,132:0:0:132:4732:-424.948,-39.736,0	1/1:36:0,36:0:0:36:1288:-115.94,-10.8371,0	1/1:62:0,62:0:0:62:2205:-197.632,-18.6639,0	1/1:29:0,29:0:0:29:1036:-93.2806,-8.72987,0	1/1:52:0,52:0:0:52:1848:-166.302,-15.6536,0	1/1:34:0,34:0:0:34:1224:-110.224,-10.235,0	0/1:29:16,13:16:576:13:460:-32.94,0,-43.4451	1/1:26:0,26:0:0:26:936:-84.3469,-7.82678,0	0/1:33:14,19:14:504:19:672:-50.6422,0,-35.7641	0/1:67:30,37:30:1053:37:1332:-99.3277,0,-74.9096	0/1:98:46,52:46:1648:52:1856:-137.26,0,-119.108	0/1:113:56,57:56:2004:57:2040:-149.028,0,-146.617	0/1:50:30,20:30:1072:20:712:-49.338,0,-81.741	0/1:63:27,36:27:968:36:1288:-97.0809,0,-68.4725	1/1:50:4,46:4:144:46:1652:-134.648,-1.73788,0	1/1:45:0,45:0:0:45:1608:-144.642,-13.5464,0	0/1:334:175,158:175:6276:158:5656:-407.81,0,-464.369	0/1:176:72,104:72:2584:104:3700:-279.184,0,-179.828	1/1:17:0,17:0:0:17:608:-54.8491,-5.11751,0	0/1:104:56,47:56:1996:47:1673:-119.447,0,-148.548	0/1:85:46,39:46:1629:39:1399:-100.301,0,-121.309	1/1:95:0,95:0:0:95:3377:-302.747,-28.5979,0	0/1:11:5,6:5:180:6:216:-16.4511,0,-13.2407	0/1:30:19,11:19:684:11:392:-26.1167,0,-52.8594	1/1:9:0,9:0:0:9:324:-29.426,-2.70927,0	1/1:16:0,16:0:0:16:576:-51.9764,-4.81648,0	1/1:23:0,23:0:0:23:824:-74.3,-6.92369,0	1/1:133:0,133:0:0:133:4725:-424.751,-40.037,0	1/1:270:0,270:0:0:270:9649:-865.233,-81.2781,0	0/1:44:20,24:20:720:24:852:-63.5532,0,-51.8835	0/1:8:4,4:4:144:4:140:-10.3355,0,-10.9054	0/1:44:11,33:11:396:33:1180:-92.8643,0,-22.7374	1/1:35:0,35:0:0:35:1248:-111.695,-10.5361,0	0/1:56:31,25:31:1112:25:892:-62.8575,0,-83.5337	0/1:70:38,32:38:1364:32:1148:-82.336,0,-101.989	1/1:40:0,40:0:0:40:1436:-129.361,-12.0412,0	0/1:99:56,43:56:2012:43:1529:-108.057,0,-151.55	0/1:81:43,38:43:1540:38:1364:-98.1899,0,-114.51	0/1:100:42,58:42:1504:58:2072:-156.207,0,-105.552	1/1:81:0,81:0:0:81:2865:-257.299,-24.3834,0	1/1:186:0,186:0:0:186:6640:-595.795,-55.9916,0	1/1:23:0,23:0:0:23:824:-74.2596,-6.92369,0	1/1:10:0,10:0:0:10:356:-32.2762,-3.0103,0	1/1:63:0,63:0:0:63:2252:-202.368,-18.9649,0	0/1:22:13,9:13:460:9:324:-22.8735,0,-35.1127	1/1:23:0,23:0:0:23:824:-74.2889,-6.92369,0	0/1:81:36,45:36:1292:45:1612:-118.942,0,-92.2003	1/1:24:0,24:0:0:24:864:-77.9422,-7.22472,0	0/1:9:8,1:8:288:1:36:-0.887999,0,-23.5581	0/1:19:11,8:11:396:8:288:-20.5405,0,-30.2632	0/1:54:27,27:27:964:27:960:-69.9706,0,-70.8212	1/1:70:0,70:0:0:70:2512:-225.715,-21.0721,0	1/1:8:0,8:0:0:8:288:-26.2485,-2.40824,0	0/1:104:32,72:32:1152:72:2571:-199.641,0,-72.683	1/1:141:3,138:3:108:138:4905:-430.67,-32.3701,0	0/1:42:33,9:33:1169:9:324:-16.6299,0,-92.872	1/1:74:0,74:0:0:74:2648:-237.97,-22.2762,0	0/1:138:73,65:73:2586:65:2324:-166.985,0,-191.444	0/1:107:58,49:58:2088:49:1760:-126.257,0,-155.98	1/1:16:0,16:0:0:16:568:-51.3487,-4.81648,0	1/1:31:0,31:0:0:31:1112:-100.076,-9.33193,0	1/1:69:1,68:1:36:68:2422:-214.311,-17.1728,0	0/1:8:3,5:3:108:5:180:-14.1319,0,-7.66693	1/1:91:0,91:0:0:91:3252:-290.618,-27.3937,0	0/1:53:25,28:25:888:28:1000:-73.2936,0,-64.2844	1/1:101:0,101:0:0:101:3617:-324.445,-30.404,0	1/1:49:0,49:0:0:49:1760:-158.538,-14.7505,0	0/1:140:69,71:69:2456:71:2548:-185.075,0,-179.143	0/1:135:86,49:86:3084:49:1760:-117.218,0,-237.149	0/1:21:11,10:11:396:10:356:-25.9822,0,-29.6611	1/1:43:1,42:1:36:42:1504:-131.39,-9.34602,0	1/1:68:0,68:0:0:68:2428:-217.919,-20.47,0	1/1:143:0,143:0:0:143:5107:-458.386,-43.0473,0	1/1:64:0,64:0:0:64:2272:-204.482,-19.2659,0	1/1:25:0,25:0:0:25:891:-80.258,-7.52575,0	0/1:39:19,20:19:684:20:716:-52.937,0,-50.1502	1/1:93:0,93:0:0:93:3324:-298.816,-27.9958,0	0/1:43:21,22:21:756:22:780:-57.4134,0,-55.4229	0/1:59:25,34:25:900:34:1220:-91.8026,0,-63.5602	1/1:35:0,35:0:0:35:1251:-112.325,-10.5361,0	1/1:26:0,26:0:0:26:928:-83.0958,-7.82678,0	0/1:58:30,28:30:1076:28:996:-72.2252,0,-79.6931	0/1:83:61,22:61:2181:22:777:-45.13,0,-171.569	1/1:43:0,43:0:0:43:1498:-134.391,-12.9443,0	1/1:55:0,55:0:0:55:1960:-176.504,-16.5567,0
chr04	18472532	.	T	C	30358.6	PASS	AB=0.460876;ABP=57.0428;AC=42;AF=0.225806;AN=186;AO=1884;CIGAR=1X;DP=8881;DPB=8881;DPRA=1.08973;EPP=4094.06;EPPR=15190.3;GTI=1;LEN=1;MEANALT=1.04444;MQM=59.2962;MQMR=59.6288;NS=93;NUMALT=1;ODDS=1.11395;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67134;QR=250849;RO=6994;RPL=1884;RPP=4094.06;RPPR=15190.3;RPR=0;RUN=1;SAF=0;SAP=4094.06;SAR=1884;SRF=0;SRP=15190.3;SRR=6994;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:25,14:25:892:14:489:-32.5702,0,-68.8572	0/0:111:111,0:111:3996:0:0:0,-33.4143,-359.778	0/0:130:130,0:130:4661:0:0:0,-39.1339,-419.619	0/0:155:155,0:155:5527:0:0:0,-46.6596,-497.54	0/0:101:101,0:101:3602:0:0:0,-30.404,-324.383	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.612	0/1:171:99,72:99:3564:72:2543:-177.553,0,-269.235	0/0:167:167,0:167:5996:0:0:0,-50.272,-539.668	0/1:95:48,47:48:1728:47:1676:-122.209,0,-127.134	0/0:87:86,1:86:3083:1:36:0,-22.5913,-274.095	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4657	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.803	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.474	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.131	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.686	0/1:43:18,25:18:648:25:900:-68.3492,0,-45.7072	0/0:40:40,0:40:1432:0:0:0,-12.0412,-128.461	0/1:37:16,21:16:576:21:756:-57.2291,0,-40.9303	0/1:23:9,14:9:324:14:504:-38.7459,0,-22.5248	0/1:260:134,126:134:4805:126:4501:-326.944,0,-354.111	0/1:145:86,59:86:3081:59:2120:-146.98,0,-233.835	0/1:157:50,107:50:1792:107:3829:-296.499,0,-114.301	0/1:115:73,42:73:2624:42:1504:-101.036,0,-201.729	0/0:197:190,7:190:6821:7:252:0,-36.2739,-590.908	0/0:98:97,1:97:3477:1:36:0,-25.9027,-309.44	0/1:331:164,167:164:5861:167:5935:-434.371,0,-427.865	0/1:220:126,94:126:4532:94:3331:-233.675,0,-341.798	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:324:189,134:189:6781:134:4771:-331.939,0,-512.509	0/1:98:59,39:59:2120:39:1389:-95.806,0,-161.54	0/0:161:161,0:161:5766:0:0:0,-48.4658,-518.775	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8394	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2845	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5497	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:158:158,0:158:5688:0:0:0,-47.5627,-511.979	0/0:251:251,0:251:8975:0:0:0,-75.5585,-807.338	0/1:25:14,11:14:504:11:396:-28.4546,0,-38.1723	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:111:59,52:59:2124:52:1842:-132.568,0,-157.984	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5258	0/1:155:87,68:87:3132:68:2444:-173.115,0,-235.358	0/1:34:20,14:20:705:14:489:-34.1039,0,-53.5296	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:98:55,43:55:1980:43:1531:-108.564,0,-148.973	0/1:134:84,49:84:3009:49:1764:-118.131,0,-230.538	0/1:143:84,59:84:2986:59:2116:-147.627,0,-225.901	0/0:151:151,0:151:5421:0:0:0,-45.4555,-487.981	0/0:140:140,0:140:5032:0:0:0,-42.1442,-452.896	0/0:269:269,0:269:9645:0:0:0,-80.9771,-867.923	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:147:146,0:146:5248:0:0:0,-43.9504,-472.075	0/1:38:17,21:17:593:21:737:-55.2063,0,-42.2556	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:123:67,56:67:2412:56:1982:-141.593,0,-180.128	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.17	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.01586	0/1:56:28,28:28:1008:28:1004:-73.8182,0,-74.1717	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.433	.:.:.:.:.:.:.:.	0/1:193:114,79:114:4070:79:2832:-197.006,0,-308.135	0/0:273:273,0:273:9789:0:0:0,-82.1812,-880.646	0/1:68:39,29:39:1400:29:1040:-73.4021,0,-105.802	0/0:108:108,0:108:3873:0:0:0,-32.5112,-348.727	0/1:154:76,78:76:2732:78:2782:-203.96,0,-199.695	0/1:132:65,67:65:2325:67:2357:-172.602,0,-169.764	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7434	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.378	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.114	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.343	0/1:76:45,31:45:1605:31:1101:-76.4917,0,-121.803	0/0:178:178,0:178:6378:0:0:0,-53.5833,-574.044	0/0:201:201,0:201:7198:0:0:0,-60.507,-647.859	0/1:131:77,54:77:2768:54:1925:-134.062,0,-209.696	0/1:76:44,32:44:1584:32:1137:-79.7587,0,-119.872	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:112:112,0:112:4017:0:0:0,-33.7154,-361.661	0/0:133:133,0:133:4769:0:0:0,-40.037,-429.234	0/0:301:301,0:301:10775:0:0:0,-90.61,-969.55	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.479	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.989	0/1:45:16,29:16:576:29:1014:-77.9059,0,-38.6286	0/0:91:91,0:91:3276:0:0:0,-27.3937,-295.005	0/1:40:19,21:19:684:21:756:-55.868,0,-49.8216	0/1:58:27,31:27:972:31:1097:-81.5017,0,-70.3254	0/0:49:49,0:49:1756:0:0:0,-14.7505,-157.868	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:25:12,13:12:432:13:468:-34.9201,0,-31.6081	0/1:55:27,28:27:972:28:1000:-73.7472,0,-71.2413	0/0:100:100,0:100:3600:0:0:0,-30.103,-324.152	0/0:41:40,1:40:1436:1:36:0,-8.76346,-125.952
chr04	18472536	.	C	T	143490	PASS	AB=0.538787;ABP=55.5662;AC=144;AF=0.774194;AN=186;AO=6907;CIGAR=1X;DP=8772;DPB=8772;DPRA=95.337;EPP=15001.4;EPPR=4050.63;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.6285;MQMR=59.3525;NS=93;NUMALT=1;ODDS=1.2409;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242977;QR=66678;RO=1864;RPL=6907;RPP=15001.4;RPPR=4050.63;RPR=0;RUN=1;SAF=0;SAP=15001.4;SAR=6907;SRF=0;SRP=4050.63;SRR=1864;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:14,25:14:500:25:872:-67.0539,0,-33.5844	1/1:109:0,109:0:0:109:3842:-345.929,-32.8123,0	1/1:129:0,129:0:0:129:4500:-405.133,-38.8329,0	1/1:152:0,152:0:0:152:5307:-477.756,-45.7566,0	1/1:95:0,95:0:0:95:3322:-299.187,-28.5979,0	1/1:64:0,64:0:0:64:2268:-204.375,-19.2659,0	0/1:172:73,99:73:2601:99:3458:-259.409,0,-182.455	1/1:164:0,164:0:0:164:5767:-519.092,-49.3689,0	0/1:93:46,47:46:1625:47:1652:-120.899,0,-118.221	1/1:87:1,86:1:36:86:3013:-267.785,-22.5913,0	1/1:22:0,22:0:0:22:784:-70.8663,-6.62266,0	1/1:49:0,49:0:0:49:1752:-157.963,-14.7505,0	1/1:46:0,46:0:0:46:1614:-145.453,-13.8474,0	1/1:33:0,33:0:0:33:1176:-106.05,-9.93399,0	1/1:51:0,51:0:0:51:1820:-163.997,-15.3525,0	0/1:43:25,18:25:896:18:636:-44.6233,0,-67.9885	1/1:40:0,40:0:0:40:1428:-128.109,-12.0412,0	0/1:35:20,15:20:720:15:536:-38.0388,0,-54.5927	0/1:23:14,9:14:500:9:324:-22.5248,0,-38.4009	0/1:257:124,133:124:4423:133:4679:-343.696,0,-320.826	0/1:143:58,85:58:2084:85:2995:-226.71,0,-144.662	0/1:154:107,47:107:3836:47:1657:-103.057,0,-297.991	0/1:113:42,71:42:1508:71:2525:-193.417,0,-101.998	1/1:197:7,190:7:252:190:6675:-577.798,-36.274,0	1/1:97:1,96:1:36:96:3373:-300.099,-25.6016,0	0/1:327:163,164:163:5856:164:5795:-422.559,0,-427.47	0/1:218:94,124:94:3376:124:4369:-327.745,0,-238.327	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	0/1:318:131,187:131:4681:187:6599:-497.975,0,-325.692	0/1:97:39,58:39:1391:58:2056:-156.084,0,-96.2883	1/1:158:0,158:0:0:158:5540:-498.632,-47.5627,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:9:4,5:4:144:5:176:-13.4723,0,-10.6043	1/1:4:0,4:0:0:4:140:-12.9155,-1.20412,0	1/1:5:0,5:0:0:5:176:-16.1841,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:155:0,155:0:0:155:5520:-496.879,-46.6597,0	1/1:243:0,243:0:0:243:8547:-769.058,-73.1503,0	0/1:25:11,14:11:392:14:504:-38.1723,0,-28.0919	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:113:53,60:53:1896:60:2091:-154.417,0,-136.817	1/1:17:0,17:0:0:17:608:-55.0487,-5.11751,0	0/1:154:66,88:66:2376:88:3124:-234.915,0,-167.44	0/1:34:14,20:14:504:20:712:-54.1683,0,-35.4631	1/1:46:0,46:0:0:46:1632:-147.169,-13.8474,0	0/1:98:44,54:44:1576:54:1870:-139.075,0,-112.608	0/1:132:48,84:48:1709:84:2957:-226.475,0,-113.837	0/1:142:58,84:58:2071:84:2949:-222.891,0,-143.893	1/1:150:0,150:0:0:150:5226:-470.451,-45.1545,0	1/1:137:0,137:0:0:137:4826:-434.383,-41.2411,0	1/1:268:0,268:0:0:268:9370:-843.213,-80.676,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:142:0,142:0:0:142:5005:-450.461,-42.7463,0	0/1:38:21,17:21:741:17:565:-39.7229,0,-55.5645	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:122:55,67:55:1950:67:2354:-175.223,0,-139.002	1/1:42:0,42:0:0:42:1496:-134.843,-12.6433,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:4,1:4:144:1:36:-2.01586,0,-11.8085	0/1:55:27,28:27:972:28:992:-73.0322,0,-71.2413	1/1:76:0,76:0:0:76:2677:-241.129,-22.8783,0	.:.:.:.:.:.:.:.	0/1:191:78,113:78:2800:113:3986:-301.235,0,-194.729	1/1:269:0,269:0:0:269:9417:-847.382,-80.9771,0	0/1:67:29,38:29:1040:38:1340:-100.704,0,-73.72	1/1:107:0,107:0:0:107:3682:-331.56,-32.2102,0	0/1:155:78,77:78:2766:77:2709:-197.311,0,-202.237	0/1:131:66,65:66:2344:65:2305:-168.273,0,-171.716	1/1:10:0,10:0:0:10:360:-32.7434,-3.0103,0	1/1:70:0,70:0:0:70:2416:-217.591,-21.0721,0	1/1:55:0,55:0:0:55:1949:-175.675,-16.5567,0	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	1/1:112:0,112:0:0:112:3911:-352.185,-33.7154,0	0/1:74:31,42:31:1108:42:1488:-111.826,0,-77.6991	1/1:178:0,178:0:0:178:6290:-566.135,-53.5833,0	1/1:199:0,199:0:0:199:7046:-634.197,-59.905,0	0/1:130:53,77:53:1904:77:2729:-206.489,0,-132.475	0/1:75:32,43:32:1148:43:1505:-113.062,0,-81.0526	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:108:0,108:0:0:108:3760:-338.548,-32.5112,0	1/1:133:0,133:0:0:133:4644:-418.037,-40.037,0	1/1:293:0,293:0:0:293:10246:-921.987,-88.2018,0	1/1:76:0,76:0:0:76:2716:-244.682,-22.8783,0	1/1:31:0,31:0:0:31:1100:-99.3094,-9.33193,0	0/1:44:28,16:28:1008:16:560:-37.4834,0,-76.8435	1/1:89:0,89:0:0:89:3160:-284.575,-26.7917,0	0/1:40:21,19:21:756:19:676:-49.0992,0,-55.868	0/1:57:31,26:31:1108:26:928:-66.6749,0,-82.7837	1/1:49:0,49:0:0:49:1717:-154.557,-14.7505,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:25:13,12:13:468:12:428:-31.2539,0,-34.9201	0/1:53:28,25:28:1008:25:884:-63.9238,0,-75.0702	1/1:99:0,99:0:0:99:3466:-312.102,-29.802,0	1/1:41:0,41:0:0:41:1468:-132.381,-12.3422,0
chr04	18599869	.	C	T	160350	PASS	AB=0.458663;ABP=76.076;AC=144;AF=0.765957;AN=188;AO=7608;CIGAR=1X;DP=10300;DPB=10300;DPRA=36.9068;EPP=16523.6;EPPR=5831.25;GTI=3;LEN=1;MEANALT=1.04301;MQM=59.9548;MQMR=59.9833;NS=94;NUMALT=1;ODDS=0.8057;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272230;QR=96121;RO=2688;RPL=0;RPP=16523.6;RPPR=5831.25;RPR=7608;RUN=1;SAF=7608;SAP=16523.6;SAR=0;SRF=2688;SRP=5839.93;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:18,12:18:648:12:424:-29.4655,0,-49.621	1/1:138:0,138:0:0:138:4903:-441.404,-41.5421,0	1/1:136:1,135:1:36:135:4789:-427.567,-37.3418,0	1/1:228:0,228:0:0:228:8159:-734.316,-68.6348,0	1/1:127:0,127:0:0:127:4548:-409.486,-38.2308,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:159:82,77:82:2936:77:2750:-199.878,0,-216.607	1/1:203:0,203:0:0:203:7258:-653.272,-61.1091,0	0/1:59:26,33:26:936:33:1180:-88.7473,0,-66.7987	1/1:113:0,113:0:0:113:4049:-364.597,-34.0164,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	0/1:45:27,18:27:968:18:648:-45.1055,0,-73.891	0/1:38:21,17:21:748:17:612:-43.9743,0,-56.2062	1/1:68:0,68:0:0:68:2429:-218.864,-20.47,0	0/1:29:16,13:16:572:13:468:-33.7298,0,-43.0836	0/1:42:23,19:23:828:19:684:-49.2471,0,-62.2009	0/1:224:109,115:109:3893:115:4136:-304.991,0,-283.132	0/1:115:46,69:46:1620:69:2464:-187.396,0,-111.468	0/1:160:94,66:94:3372:66:2363:-164.763,0,-255.531	0/1:28:18,10:18:644:10:360:-24.3155,0,-49.8618	1/1:138:10,128:10:360:128:4594:-379.66,-8.79784,0	1/1:86:0,86:0:0:86:3076:-277.067,-25.8886,0	0/1:397:227,170:227:8123:170:6080:-427.722,0,-611.572	0/1:235:115,120:115:4124:120:4304:-316.794,0,-300.602	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:270:137,133:137:4911:133:4767:-347.909,0,-360.862	0/1:326:206,120:206:7342:120:4304:-289.4,0,-562.694	1/1:225:0,225:0:0:225:8052:-724.694,-67.7318,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:132:0,132:0:0:132:4736:-426.397,-39.736,0	1/1:334:0,334:0:0:334:11913:-1072,-100.544,0	0/1:70:35,35:35:1260:35:1252:-91.913,0,-92.6334	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:177:105,72:105:3764:72:2584:-179.526,0,-285.677	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	0/1:168:82,86:82:2940:86:3072:-226.13,0,-214.261	0/1:41:21,20:21:756:20:716:-52.4231,0,-56.025	1/1:70:0,70:0:0:70:2496:-224.893,-21.0721,0	0/1:110:52,58:52:1856:58:2064:-152.917,0,-134.206	0/1:208:91,117:91:3239:117:4188:-314.442,0,-229.118	0/1:212:124,88:124:4437:88:3148:-219.727,0,-335.681	1/1:102:4,98:4:144:98:3509:-302.702,-17.3914,0	1/1:161:0,161:0:0:161:5765:-518.963,-48.4658,0	1/1:247:0,247:0:0:247:8809:-792.798,-74.3544,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:205:107,98:107:3829:98:3498:-253.316,0,-283.094	0/1:57:24,33:24:856:33:1179:-89.2585,0,-60.2024	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:159:0,159:0:0:159:5716:-514.545,-47.8638,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:19:7,11:7:252:11:396:-30.2044,0,-17.2506	0/1:64:33,30:33:1184:30:1080:-78.3335,0,-87.6891	1/1:144:0,144:0:0:144:5175:-465.887,-43.3483,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:246:117,129:117:4180:129:4602:-340.29,0,-302.33	1/1:253:2,251:2:68:251:8988:-802.424,-69.7029,0	0/1:116:62,54:62:2208:54:1919:-138.067,0,-164.066	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:196:112,84:112:3992:84:2970:-208.525,0,-300.47	0/1:153:108,45:108:3855:45:1620:-100.015,0,-300.462	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:79:0,79:0:0:79:2827:-254.668,-23.7814,0	1/1:66:1,65:1:36:65:2336:-206.901,-16.2697,0	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:226:0,225:0:0:225:8061:-725.145,-67.7318,0	0/1:62:32,29:32:1144:29:1044:-75.5521,0,-84.5469	1/1:253:1,252:1:36:252:9022:-808.3,-72.5623,0	1/1:168:0,168:0:0:168:6018:-541.722,-50.573,0	0/1:136:74,62:74:2656:62:2228:-159.844,0,-198.346	0/1:165:107,58:107:3825:58:2073:-137.169,0,-294.776	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:128:1,127:1:36:127:4556:-406.601,-34.9336,0	1/1:104:0,104:0:0:104:3719:-334.91,-31.3071,0	1/1:281:0,281:0:0:281:10012:-900.999,-84.5894,0	1/1:77:0,77:0:0:77:2759:-248.549,-23.1793,0	1/1:45:0,45:0:0:45:1607:-144.918,-13.5464,0	0/1:60:35,25:35:1252:25:885:-61.9024,0,-94.9233	1/1:126:1,125:1:36:125:4484:-400.13,-34.3315,0	0/1:32:16,16:16:572:16:572:-42.1805,0,-42.1805	0/1:76:39,37:39:1387:37:1304:-94.7817,0,-102.25	1/1:53:0,53:0:0:53:1904:-171.635,-15.9546,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:89:54,35:54:1944:35:1252:-86.1934,0,-148.444	0/1:52:36,16:36:1280:16:572:-36.1599,0,-99.8497	1/1:53:1,52:1:32:52:1860:-164.478,-12.7553,0	1/1:71:1,70:1:36:70:2508:-222.374,-17.7749,0
chr04	18599877	.	C	A	161115	PASS	AB=0.462243;ABP=63.8456;AC=144;AF=0.765957;AN=188;AO=7623;CIGAR=1X;DP=10288;DPB=10288;DPRA=27.6452;EPP=16495.4;EPPR=5744.46;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.9528;MQMR=59.985;NS=94;NUMALT=1;ODDS=0.274186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272539;QR=95069;RO=2664;RPL=7;RPP=16495.4;RPPR=5744.46;RPR=7616;RUN=1;SAF=7623;SAP=16556.1;SAR=0;SRF=2664;SRP=5787.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:18,13:18:648:13:457:-32.1305,0,-49.32	1/1:136:0,136:0:0:136:4863:-437.822,-40.9401,0	1/1:141:1,140:1:36:140:5028:-449.058,-38.847,0	1/1:227:0,227:0:0:227:8125:-731.259,-68.3338,0	1/1:125:0,125:0:0:125:4443:-400.039,-37.6288,0	1/1:83:0,83:0:0:83:2969:-267.441,-24.9855,0	0/1:159:80,79:80:2845:79:2815:-205.724,0,-208.424	1/1:206:0,206:0:0:206:7386:-664.784,-62.0122,0	0/1:60:27,33:27:964:33:1171:-87.6349,0,-69.015	1/1:111:0,111:0:0:111:3977:-358.119,-33.4143,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:58:0,58:0:0:58:2084:-187.827,-17.4597,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	0/1:45:27,18:27:964:18:644:-44.7442,0,-73.5305	0/1:38:21,17:21:748:17:612:-43.9743,0,-56.2062	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:31:15,16:15:540:16:576:-42.8427,0,-39.6046	0/1:41:22,19:22:788:19:676:-48.8258,0,-58.9026	0/1:224:109,115:109:3895:115:4109:-302.563,0,-283.313	0/1:113:45,68:45:1604:68:2444:-186.198,0,-110.634	0/1:160:93,67:93:3312:67:2397:-167.82,0,-250.135	0/1:30:17,13:17:608:13:468:-33.4287,0,-46.0211	1/1:142:10,131:10:360:131:4700:-389.002,-10.0245,0	1/1:84:0,84:0:0:84:3020:-272.025,-25.2865,0	0/1:393:223,170:223:7963:170:6080:-428.926,0,-598.377	0/1:236:116,120:116:4135:120:4308:-316.852,0,-301.292	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:269:136,133:136:4852:133:4753:-346.95,0,-355.859	0/1:318:202,116:202:7211:116:4119:-275.165,0,-553.319	1/1:223:0,223:0:0:223:7968:-717.139,-67.1297,0	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	1/1:132:0,132:0:0:132:4744:-427.116,-39.736,0	1/1:333:0,333:0:0:333:11830:-1064.53,-100.243,0	0/1:71:35,36:35:1252:36:1292:-95.2106,0,-91.6119	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:180:106,74:106:3785:74:2656:-185.1,0,-286.662	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:170:85,85:85:3025:85:3002:-219.235,0,-221.305	0/1:40:20,20:20:716:20:716:-52.7256,0,-52.7265	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	0/1:109:51,58:51:1801:58:2047:-151.686,0,-129.558	0/1:204:89,115:89:3184:115:4128:-310.187,0,-225.374	0/1:215:126,89:126:4492:89:3166:-220.441,0,-339.73	1/1:104:1,103:1:36:103:3666:-326.541,-27.7088,0	1/1:157:0,157:0:0:157:5625:-506.369,-47.2617,0	1/1:248:0,248:0:0:248:8885:-799.631,-74.6554,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:206:106,100:106:3797:100:3577:-260.123,0,-279.914	0/1:57:24,33:24:856:33:1161:-87.636,0,-60.2024	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:157:0,157:0:0:157:5554:-499.976,-47.2617,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/1:64:33,31:33:1176:31:1116:-81.4858,0,-86.8818	1/1:145:0,145:0:0:145:5188:-467.057,-43.6494,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:241:113,128:113:4043:128:4533:-335.588,0,-291.509	1/1:256:2,254:2:72:254:9081:-810.425,-70.227,0	0/1:119:63,56:63:2239:56:1984:-143.009,0,-165.951	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	0/1:197:112,85:112:3972:85:3044:-214.85,0,-298.369	0/1:153:106,47:106:3787:47:1684:-105.772,0,-294.344	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	0/1:16:6,10:6:212:10:360:-27.9278,0,-14.6083	1/1:223:0,223:0:0:223:7997:-719.739,-67.1297,0	0/1:60:32,28:32:1144:28:1004:-72.6141,0,-85.2077	1/1:250:0,250:0:0:250:8931:-803.724,-75.2575,0	1/1:167:0,167:0:0:167:5996:-539.743,-50.272,0	0/1:138:75,63:75:2688:63:2211:-157.689,0,-200.622	0/1:163:105,58:105:3737:58:2069:-137.411,0,-287.463	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:129:1,128:1:36:128:4593:-409.933,-35.2346,0	1/1:107:0,107:0:0:107:3816:-343.638,-32.2102,0	1/1:280:0,280:0:0:280:9997:-899.653,-84.2884,0	1/1:78:0,78:0:0:78:2804:-252.597,-23.4803,0	1/1:44:0,44:0:0:44:1584:-142.849,-13.2453,0	0/1:57:33,24:33:1180:24:864:-60.9215,0,-89.3493	1/1:128:1,127:1:36:127:4564:-407.326,-34.9336,0	0/1:33:17,16:17:604:16:576:-42.241,0,-44.7566	0/1:76:39,37:39:1400:37:1332:-97.3041,0,-103.421	1/1:52:0,52:0:0:52:1872:-168.757,-15.6536,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:90:54,36:54:1931:36:1288:-89.1309,0,-146.973	0/1:51:35,16:35:1252:16:572:-36.4609,0,-97.6325	1/1:55:1,54:1:36:54:1913:-168.845,-12.9584,0	1/1:70:1,69:1:36:69:2465:-218.504,-17.4738,0
chr04	18599954	.	T	C	37229.2	PASS	AB=0.55383;ABP=101.9;AC=45;AF=0.239362;AN=188;AO=2195;CIGAR=1X;DP=8023;DPB=8023;DPRA=1.29042;EPP=4769.39;EPPR=12651.8;GTI=5;LEN=1;MEANALT=1;MQM=59.9667;MQMR=59.9938;NS=94;NUMALT=1;ODDS=0.392156;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77712;QR=207755;RO=5825;RPL=0;RPP=4769.39;RPPR=12651.8;RPR=2195;RUN=1;SAF=0;SAP=4769.39;SAR=2195;SRF=0;SRP=12651.8;SRR=5825;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:9,10:9:320:10:336:-24.8436,0,-23.4228	0/0:114:113,1:113:4026:1:36:0,-30.7191,-358.931	0/0:168:167,0:167:5956:0:0:0,-50.272,-535.788	0/0:145:145,0:145:5184:0:0:0,-43.6493,-466.698	0/0:93:89,4:89:3175:4:144:0,-14.6822,-272.658	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.639	0/1:149:81,68:81:2866:68:2420:-173.201,0,-213.325	0/0:104:103,1:103:3684:1:36:0,-27.7088,-328.165	0/1:111:58,53:58:2076:53:1869:-135.074,0,-153.696	0/0:103:103,0:103:3665:0:0:0,-31.0061,-330.054	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:55:54,1:54:1936:1:36:0,-12.9584,-170.918	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.894	0/1:49:22,27:22:760:27:941:-70.2515,0,-53.9654	0/1:35:17,18:17:603:18:640:-47.3933,0,-44.0635	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:29:13,16:13:459:16:572:-43.0836,0,-32.9142	0/1:24:12,12:12:408:12:432:-31.9965,0,-29.8194	0/1:135:57,78:57:2040:78:2748:-206.921,0,-143.233	0/1:109:61,48:61:2179:48:1679:-118.552,0,-163.563	0/1:188:62,126:62:2196:126:4476:-346.406,0,-141.31	0/1:102:54,48:54:1928:48:1679:-120.68,0,-143.092	0/0:160:153,7:153:5476:7:252:0,-25.1358,-469.939	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/1:326:147,179:147:5207:179:6310:-469.858,0,-370.636	0/1:225:114,111:114:4040:111:3950:-287.961,0,-296.058	0/0:32:31,0:31:1095:0:0:0,-9.33193,-98.4995	0/1:274:103,171:103:3675:171:6080:-464.82,0,-248.471	0/1:128:52,76:52:1851:76:2709:-205.521,0,-128.337	0/0:100:100,0:100:3556:0:0:0,-30.103,-320.25	0/1:9:2,7:2:68:7:243:-19.4982,0,-3.74844	0/1:17:6,11:6:216:11:388:-30.1399,0,-14.673	0/0:3:2,0:2:72:0:0:0,-0.60206,-6.47689	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:178:177,1:177:6308:1:36:0,-49.9851,-564.214	0/0:103:103,0:103:3687:0:0:0,-31.0061,-332.032	0/1:53:32,21:32:1130:21:743:-51.2387,0,-86.0523	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:105:41,64:41:1472:64:2275:-173.404,0,-101.168	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:134:84,50:84:3004:50:1783:-120.415,0,-230.254	0/1:44:27,17:27:972:17:604:-41.4453,0,-74.5526	0/0:57:57,0:57:2015:0:0:0,-17.1587,-181.578	0/1:135:74,61:74:2635:61:2178:-155.646,0,-196.758	0/1:110:62,48:62:2187:48:1681:-118.46,0,-163.983	0/1:182:70,112:70:2491:112:3948:-300.723,0,-169.656	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.902	0/0:94:94,0:94:3367:0:0:0,-28.2968,-303.245	0/0:242:242,0:242:8667:0:0:0,-72.8493,-780.019	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:143:66,77:66:2350:77:2747:-204.426,0,-168.711	0/1:54:23,31:23:816:31:1104:-83.415,0,-57.5061	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:104:104,0:104:3716:0:0:0,-31.3071,-334.642	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:70:43,27:43:1540:27:953:-65.0112,0,-117.821	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:183:63,120:63:2260:120:4257:-328.222,0,-148.574	0/0:171:170,1:170:6059:1:36:0,-47.8779,-541.815	0/1:61:27,34:27:959:34:1208:-90.6633,0,-68.2626	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/1:92:43,49:43:1544:49:1748:-129.909,0,-111.558	0/1:99:26,73:26:932:73:2598:-204.266,0,-54.3969	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/0:68:68,0:68:2404:0:0:0,-20.47,-216.618	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:159:159,0:159:5658:0:0:0,-47.8638,-509.343	0/1:72:26,46:26:936:46:1623:-124.681,0,-62.8853	0/0:138:137,1:137:4873:1:36:0,-37.9439,-435.126	0/0:132:132,0:132:4715:0:0:0,-39.736,-424.51	0/1:72:33,39:33:1188:39:1383:-103.094,0,-85.5544	0/1:78:13,65:13:468:65:2274:-181.44,0,-18.9793	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:73:72,1:72:2580:1:36:0,-18.3769,-228.851	0/0:86:86,0:86:3062:0:0:0,-25.8886,-275.809	0/0:196:196,0:196:6990:0:0:0,-59.0019,-629.166	0/0:73:73,0:73:2599:0:0:0,-21.9752,-234.159	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:85:44,41:44:1572:41:1439:-104.217,0,-116.184	0/0:110:110,0:110:3926:0:0:0,-33.1133,-353.532	0/1:31:13,18:13:468:18:636:-48.2361,0,-33.1277	0/1:69:33,36:33:1176:36:1292:-95.8127,0,-85.3767	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:43:12,31:12:432:31:1074:-84.0197,0,-26.2769	0/1:52:15,37:15:531:37:1292:-100.925,0,-32.4683	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537
chr04	18711544	.	C	A	8530.89	PASS	AB=0.509002;ABP=4.45689;AC=45;AF=0.241935;AN=186;AO=1065;CIGAR=1X;DP=4259;DPB=4259;DPRA=1.0251;EPP=2315.63;EPPR=6936.52;GTI=2;LEN=1;MEANALT=1.02;MQM=26.8404;MQMR=42.4018;NS=93;NUMALT=1;ODDS=0.197666;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37817;QR=114439;RO=3193;RPL=0;RPP=2315.63;RPPR=6936.52;RPR=1065;RUN=1;SAF=1065;SAP=2315.63;SAR=0;SRF=3193;SRP=6936.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:13,12:13:464:12:432:-21.344,0,-33.7007	0/0:46:46,0:46:1644:0:0:0,-13.8474,-143.888	0/0:90:90,0:90:3232:0:0:0,-27.0927,-283.146	0/0:103:103,0:103:3700:0:0:0,-31.0061,-319.876	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.8355	0/0:22:22,0:22:776:0:0:0,-6.62266,-68.6805	0/1:45:17,28:17:612:28:1004:-52.4694,0,-39.4366	0/0:49:47,2:47:1684:2:72:0,-9.71813,-143.203	0/1:80:41,39:41:1472:39:1396:-67.6272,0,-105.356	0/0:64:64,0:64:2292:0:0:0,-19.2659,-201.923	0/0:50:50,0:50:1792:0:0:0,-15.0515,-157.652	0/0:69:69,0:69:2472:0:0:0,-20.7711,-216.348	0/0:43:42,1:42:1504:1:36:0,-10.2957,-130.083	0/0:35:35,0:35:1260:0:0:0,-10.536,-111.071	0/1:66:39,27:39:1404:27:968:-43.0417,0,-103.336	0/1:48:20,28:20:716:28:977:-51.4532,0,-48.6337	0/0:25:25,0:25:891:0:0:0,-7.52575,-78.3974	0/1:34:13,21:13:468:21:722:-37.3625,0,-31.2031	0/1:23:7,16:7:252:16:572:-30.0239,0,-15.6108	0/1:85:35,50:35:1252:50:1780:-92.5985,0,-84.6749	0/1:90:55,35:55:1972:35:1256:-55.8857,0,-144.967	0/1:18:11,7:11:392:7:233:-10.8368,0,-29.4696	0/1:53:24,29:24:852:29:1028:-52.8657,0,-59.4628	0/0:43:40,3:40:1432:3:108:0,-5.52821,-116.177	0/0:30:30,0:30:1080:0:0:0,-9.0309,-95.2188	0/1:67:29,37:29:1044:37:1320:-67.8018,0,-72.0546	0/1:110:71,39:71:2540:39:1404:-59.0732,0,-188.897	0/0:25:25,0:25:891:0:0:0,-7.52575,-78.8927	0/1:101:57,44:57:2044:44:1557:-72.5557,0,-148.016	0/1:52:33,19:33:1184:19:680:-29.6766,0,-87.7156	0/0:27:27,0:27:968:0:0:0,-8.12781,-85.4596	1/1:10:0,10:0:0:10:360:-24.1023,-3.0103,0	0/1:10:2,8:2:72:8:276:-17.0023,0,-3.67962	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.5345	.:.:.:.:.:.:.:.	0/0:10:10,0:10:360:0:0:0,-3.0103,-30.199	0/0:170:170,0:170:6084:0:0:0,-51.1751,-531.641	0/0:34:34,0:34:1220:0:0:0,-10.235,-107.759	0/1:62:23,39:23:828:39:1369:-73.3453,0,-54.2351	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.68992	0/1:70:30,40:30:1072:40:1383:-72.3205,0,-73.5981	0/0:26:26,0:26:936:0:0:0,-7.82678,-82.112	0/1:47:22,25:22:784:25:892:-43.948,0,-53.9911	0/1:82:42,40:42:1500:40:1405:-67.3774,0,-107.685	0/0:45:45,0:45:1612:0:0:0,-13.5463,-141.967	0/1:38:19,19:19:680:19:684:-34.1168,0,-48.7136	0/1:28:11,17:11:396:17:608:-31.8766,0,-26.66	0/1:58:31,27:31:1116:27:964:-45.6128,0,-80.0199	0/0:25:25,0:25:896:0:0:0,-7.52575,-79.2279	0/0:46:46,0:46:1652:0:0:0,-13.8474,-144.895	0/0:75:75,0:75:2696:0:0:0,-22.5772,-234.007	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.52101	0/0:36:35,1:35:1252:1:21:0,-8.83371,-108.394	0/1:18:12,6:12:432:6:208:-9.0246,0,-32.6	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.2769	0/1:40:13,27:13:468:27:956:-52.0913,0,-29.4701	0/0:15:15,0:15:540:0:0:0,-4.51545,-47.6768	0/1:8:4,4:4:144:4:144:-7.39158,0,-10.6195	0/1:5:4,1:4:140:1:32:-1.07573,0,-11.195	0/1:14:11,3:11:392:3:108:-3.20166,0,-30.6737	0/0:50:50,0:50:1796:0:0:0,-15.0515,-157.977	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.85882	0/1:73:43,30:43:1544:30:1072:-49.5154,0,-113.922	0/0:58:57,1:57:2044:1:32:0,-14.8789,-172.745	0/1:38:22,16:22:792:16:572:-26.1748,0,-56.7289	0/0:33:33,0:33:1184:0:0:0,-9.93399,-102.762	0/1:71:45,26:45:1608:26:936:-40.869,0,-118.907	0/1:41:12,29:12:432:29:1044:-56.8026,0,-26.0368	0/0:33:33,0:33:1188:0:0:0,-9.93399,-104.084	0/0:32:32,0:32:1152:0:0:0,-9.63296,-100.647	0/0:39:39,0:39:1404:0:0:0,-11.7402,-123.639	0/1:12:3,9:3:108:9:324:-17.6821,0,-6.24646	0/0:32:32,0:32:1148:0:0:0,-9.63296,-101.189	0/1:22:11,11:11:396:11:396:-19.8633,0,-27.0012	0/0:52:52,0:52:1839:0:0:0,-15.6536,-161.878	0/0:99:99,0:99:3552:0:0:0,-29.802,-312.462	0/1:19:10,9:10:360:9:324:-15.9989,0,-26.3216	0/1:64:34,30:34:1216:30:1072:-53.0796,0,-86.4448	0/1:8:3,5:3:108:5:180:-9.77532,0,-7.32607	0/0:38:38,0:38:1364:0:0:0,-11.4391,-120.378	0/0:52:52,0:52:1864:0:0:0,-15.6536,-164.348	0/0:110:110,0:110:3956:0:0:0,-33.1133,-346.843	0/0:38:38,0:38:1364:0:0:0,-11.4391,-119.203	0/1:53:25,28:25:900:28:984:-50.6878,0,-62.7714	0/1:50:23,27:23:816:27:964:-48.1078,0,-56.3112	0/0:93:93,0:93:3328:0:0:0,-27.9958,-291.907	0/1:18:6,12:6:216:12:413:-21.8703,0,-13.8577	0/1:71:28,43:28:999:43:1528:-81.5626,0,-66.9568	0/0:64:64,0:64:2292:0:0:0,-19.2659,-201.723	0/0:20:20,0:20:712:0:0:0,-6.0206,-62.2267	0/1:74:36,38:36:1275:38:1360:-68.7076,0,-90.106	0/1:64:18,46:18:648:46:1625:-88.8257,0,-37.805	0/0:22:21,1:21:756:1:36:0,-3.97406,-63.4226	0/0:98:98,0:98:3512:0:0:0,-29.5009,-307.775
chr04	18940966	.	CAAT	CAAC,TAAC	146077	PASS	AB=0.5,0.49654;ABP=3.0103,3.37096;AC=143,41;AF=0.777174,0.222826;AN=184;AO=5163,1727;CIGAR=3M1X,1X2M1X;DP=6926;DPB=6926;DPRA=0,1.35819;EPP=11214.3,3753.14;EPPR=13.8677;GTI=3;LEN=1,4;MEANALT=1.82609,2.32609;MQM=59.9487,59.7423;MQMR=60;NS=92;NUMALT=2;ODDS=0.770913;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=183463,60388;QR=179;RO=5;RPL=0,0;RPP=11214.3,3753.14;RPPR=13.8677;RPR=5163,1727;RUN=1,1;SAF=0,0;SAP=11214.3,3753.14;SAR=5163,1727;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,23,7:0:0:23,7:804,247:-85.8668,-20.4659,-13.5422,-65.7529,0,-63.6457	1/1:47:0,47,0:0:0:47,0:1679,0:-151.396,-14.1484,0,-151.396,-14.1484,-151.396	1/1:59:0,58,0:0:0:58,0:2060,0:-185.309,-17.4597,0,-185.309,-17.4597,-185.309	1/1:107:0,105,1:0:0:105,1:3759,35:-338.123,-31.6082,0,-335.276,-28.7654,-334.975	1/1:34:0,34,0:0:0:34,0:1212,0:-109.386,-10.235,0,-109.386,-10.235,-109.386	1/1:39:0,39,0:0:0:39,0:1391,0:-125.486,-11.7402,0,-125.486,-11.7402,-125.486	1/2:79:0,37,42:0:0:37,42:1320,1462:-226.841,-119.229,-108.091,-107.964,0,-95.3206	1/1:98:0,97,0:0:0:97,0:3455,0:-310.903,-29.1999,0,-310.903,-29.1999,-310.903	1/2:72:0,43,29:0:0:43,29:1525,1013:-206.714,-82.7386,-69.7944,-124.327,0,-115.597	1/1:75:1,74,0:1:36:74,0:2637,0:-233.969,-18.979,0,-234.27,-22.2762,-237.207	1/1:71:1,68,0:1:36:68,0:2435,0:-215.841,-17.5143,0,-216.142,-20.47,-219.08	1/1:97:0,97,0:0:0:97,0:3443,0:-310.085,-29.1999,0,-310.085,-29.1999,-310.085	1/1:103:0,102,0:0:0:102,0:3579,0:-321.881,-30.7051,0,-321.881,-30.7051,-321.881	1/1:93:0,92,0:0:0:92,0:3280,0:-295.061,-27.6948,0,-295.061,-27.6948,-295.061	1/2:76:0,39,37:0:0:39,37:1385,1308:-219.736,-106.884,-95.1434,-113.207,0,-102.069	1/2:87:0,47,40:0:0:47,40:1640,1413:-248.801,-115.421,-101.272,-133.732,0,-121.691	1/1:34:0,34,0:0:0:34,0:1184,0:-106.862,-10.235,0,-106.862,-10.235,-106.862	1/2:31:0,12,19:0:0:12,19:428,678:-90.5175,-55.6276,-52.0152,-35.2464,0,-29.5269	1/2:31:0,13,18:0:0:13,18:464,644:-90.6971,-52.8701,-48.9567,-38.1841,0,-32.7656	1/2:75:0,40,35:0:0:40,35:1423,1246:-217.872,-101.902,-89.8606,-116.326,0,-105.789	1/2:107:0,57,50:0:0:57,50:2052,1748:-309.989,-142.55,-125.392,-167.793,0,-152.741	1/2:61:0,24,36:0:0:24,36:860,1276:-174.173,-104.031,-96.8065,-70.2236,0,-59.3866	1/2:87:0,55,32:0:0:55,32:1962,1122:-251.598,-91.6532,-75.0966,-160.297,0,-150.664	1/2:49:0,44,5:0:0:44,5:1584,165:-142.936,-13.6623,-0.416948,-129.606,0,-128.101	1/1:61:0,61,0:0:0:61,0:2172,0:-195.733,-18.3628,0,-195.733,-18.3628,-195.733	1/2:182:0,98,84:0:0:98,84:3487,2904:-520.495,-236.305,-206.804,-284.541,0,-259.254	1/2:184:0,94,90:0:0:94,90:3349,3139:-528.616,-255.644,-227.347,-273.325,0,-246.232	1/1:25:0,25,0:0:0:25,0:881,0:-79.6059,-7.52575,0,-79.6059,-7.52575,-79.6059	1/2:149:0,83,66:0:0:83,66:2984,2295:-430.392,-186.939,-161.954,-243.806,0,-223.938	1/2:120:0,58,62:0:0:58,62:2064,2146:-342.924,-174.709,-157.249,-168.566,0,-149.903	1/1:87:0,87,0:0:0:87,0:3090,0:-278.327,-26.1896,0,-278.327,-26.1896,-278.327	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:10:0,2,8:0:0:2,8:72,277:-28.7352,-22.8576,-22.2556,-6.23466,0,-3.82642	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:8:0,8,0:0:0:8,0:279,0:-25.4475,-2.40824,0,-25.4475,-2.40824,-25.4475	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:207:2,204,0:2:71:204,0:7236,0:-644.551,-55.6283,0,-645.153,-61.4101,-650.938	1/1:123:0,123,0:0:0:123,0:4409,0:-396.98,-37.0267,0,-396.98,-37.0267,-396.98	1/2:73:0,35,38:0:0:35,38:1186,1314:-202.934,-106.823,-96.2868,-96.4525,0,-85.0134	.:.:.:.:.:.:.:.	1/2:66:0,28,37:0:0:28,37:980,1286:-184.269,-104.536,-96.1076,-79.7221,0,-68.584	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/2:114:0,61,53:0:0:61,53:2175,1811:-324.607,-147.303,-128.94,-177.653,0,-161.698	1/2:66:0,32,33:0:0:32,33:1139,1171:-188.343,-95.5107,-85.8777,-92.9331,0,-82.9991	1/1:64:0,64,0:0:0:64,0:2271,0:-204.65,-19.2659,0,-204.65,-19.2659,-204.65	1/2:114:0,55,58:0:0:55,58:1966,2041:-326.443,-166.14,-149.583,-160.298,0,-142.838	1/2:113:0,47,65:0:0:47,65:1671,2279:-321.678,-185.503,-171.354,-136.227,0,-116.66	1/2:130:0,65,64:0:0:65,64:2308,2222:-368.738,-180.675,-161.108,-188.113,0,-168.847	1/1:66:0,64,1:0:0:64,1:2285,34:-205.638,-19.2659,0,-202.882,-16.4395,-202.581	1/1:90:0,90,0:0:0:90,0:3224,0:-290.382,-27.0927,0,-290.382,-27.0927,-290.382	1/1:95:0,94,1:0:0:94,1:3352,36:-301.538,-28.2968,0,-298.601,-24.9996,-298.3	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:34:0,33,0:0:0:33,0:1172,0:-105.427,-9.93399,0,-105.427,-9.93399,-105.427	1/2:56:0,20,36:0:0:20,36:716,1267:-161.885,-103.494,-97.4729,-58.7471,0,-47.91	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:83:0,45,37:0:0:45,37:1587,1304:-235.429,-106.209,-92.663,-129.27,0,-118.132	1/1:22:0,22,0:0:0:22,0:784,0:-70.8839,-6.62266,0,-70.8839,-6.62266,-70.8839	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752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chr04	18941063	.	C	T	436189	PASS	AB=0.638772;ABP=1430.15;AC=145;AF=0.771277;AN=188;AO=16164;CIGAR=1X;DP=19267;DPB=19267;DPRA=0;EPP=35102.7;EPPR=6732.4;GTI=5;LEN=1;MEANALT=1.04255;MQM=59.9229;MQMR=59.9774;NS=94;NUMALT=1;ODDS=3.49682;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=569735;QR=109961;RO=3099;RPL=8155;RPP=5.87389;RPPR=6645.82;RPR=8009;RUN=1;SAF=8155;SAP=5.87389;SAR=8009;SRF=3089;SRP=6645.82;SRR=10;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:94:26,68:26:928:68:2411:-188.95,0,-54.6018	1/1:222:0,222:0:0:222:7827:-704.199,-66.8287,0	1/1:374:2,372:2:72:372:13042:-1166.77,-105.748,0	1/1:660:0,660:0:0:660:23288:-2095.27,-198.68,0	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	0/1:216:60,156:60:2089:156:5468:-427.217,0,-123.254	1/1:445:1,444:1:36:444:15668:-1406.24,-130.36,0	0/1:227:70,157:70:2474:157:5536:-430.037,0,-154.58	1/1:291:0,291:0:0:291:10274:-924.558,-87.5997,0	1/1:94:0,94:0:0:94:3320:-299.02,-28.2968,0	1/1:197:0,197:0:0:197:6837:-615.417,-59.3029,0	1/1:175:1,174:1:32:174:6150:-550.405,-49.4809,0	1/1:159:0,159:0:0:159:5515:-496.452,-47.8638,0	0/1:114:40,74:40:1415:74:2594:-199.39,0,-93.3292	0/1:91:18,73:18:629:73:2590:-205.955,0,-29.54	1/1:87:1,86:1:36:86:3043:-270.4,-22.5913,0	0/1:45:20,25:20:698:25:883:-66.2411,0,-49.5951	0/1:40:11,29:11:392:29:1024:-80.4314,0,-23.5789	0/1:370:111,259:111:3951:259:9178:-714.617,0,-244.402	0/1:820:367,453:367:13070:453:16015:-1194.17,0,-929.268	0/1:122:83,39:83:2949:39:1387:-88.4025,0,-228.918	0/1:286:81,205:81:2871:205:7250:-566.467,0,-172.534	1/1:187:7,180:7:252:180:6371:-550.063,-33.2637,0	1/1:164:0,164:0:0:164:5817:-523.635,-49.3689,0	0/1:488:155,333:155:5495:333:11801:-915.052,0,-347.777	0/1:360:102,257:102:3624:257:9098:-710.354,0,-218.044	1/1:58:0,58:0:0:58:2049:-184.669,-17.4597,0	0/1:609:247,362:247:8751:362:12794:-967.972,0,-604.258	0/1:173:81,92:81:2876:92:3280:-243.322,0,-206.998	1/1:301:0,301:0:0:301:10617:-955.449,-90.61,0	0/1:8:1,7:1:36:7:252:-20.6189,0,-1.19003	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:252:-23.0207,-2.10721,0	1/1:29:0,29:0:0:29:1032:-92.7019,-8.72987,0	1/1:31:0,31:0:0:31:1095:-98.8591,-9.33193,0	1/1:389:0,389:0:0:389:13727:-1235.23,-117.101,0	1/1:208:0,208:0:0:208:7356:-662.087,-62.6142,0	0/1:57:20,37:20:703:37:1297:-99.8671,0,-46.4348	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:292:103,189:103:3639:189:6683:-513.65,0,-239.815	1/1:59:1,58:1:36:58:2060:-182.073,-14.1625,0	0/1:273:102,171:102:3630:171:6069:-464.129,0,-244.724	0/1:99:37,62:37:1299:62:2192:-167.736,0,-87.4085	1/1:118:0,118:0:0:118:4163:-374.856,-35.5215,0	0/1:183:55,128:55:1960:128:4536:-353.014,0,-121.587	0/1:138:39,99:39:1345:99:3482:-272.051,0,-79.8036	0/1:365:119,246:119:4243:246:8656:-669.155,0,-272.175	1/1:162:0,162:0:0:162:5765:-518.931,-48.7669,0	1/1:366:1,365:1:36:365:12747:-1143.49,-106.579,0	1/1:259:0,259:0:0:259:9181:-826.271,-77.9668,0	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	1/1:307:0,307:0:0:307:10805:-972.362,-92.4162,0	0/1:130:60,70:60:2137:70:2451:-181.71,0,-153.462	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:327:101,226:101:3589:226:7957:-617.719,0,-224.78	1/1:108:0,108:0:0:108:3766:-339.145,-32.5112,0	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/1:13:5,8:5:171:8:288:-22.354,0,-11.8121	0/1:180:62,118:62:2212:118:4156:-319.93,0,-145.16	1/1:162:0,162:0:0:162:5746:-517.262,-48.7669,0	1/1:20:0,20:0:0:20:703:-63.5935,-6.0206,0	0/1:399:158,241:158:5597:241:8523:-646.965,0,-383.742	1/1:525:2,523:2:72:523:18434:-1651.83,-151.204,0	0/1:185:48,137:48:1724:137:4834:-379.525,0,-99.7549	1/1:227:0,227:0:0:227:8038:-723.449,-68.3338,0	0/1:391:142,249:142:5064:249:8744:-669.262,0,-337.575	0/1:255:133,122:133:4764:122:4345:-314.463,0,-352.154	1/1:70:0,70:0:0:70:2480:-223.432,-21.0721,0	1/1:164:0,164:0:0:164:5820:-523.916,-49.3689,0	1/1:102:0,102:0:0:102:3633:-327.175,-30.7051,0	0/1:41:11,30:11:364:30:1063:-83.6386,0,-20.7362	1/1:292:0,292:0:0:292:10215:-919.295,-87.9008,0	0/1:150:46,104:46:1622:104:3688:-286.969,0,-101.113	1/1:504:2,502:2:72:502:17591:-1575.41,-144.882,0	1/1:444:1,442:1:36:442:15396:-1381.79,-130.118,0	0/1:90:35,55:35:1234:55:1929:-146.794,0,-84.27	0/1:239:74,164:74:2622:164:5769:-447.299,0,-164.22	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:311:0,311:0:0:311:10974:-987.292,-93.6203,0	1/1:283:0,282:0:0:282:9971:-896.857,-84.8905,0	1/1:733:0,733:0:0:733:25669:-2308.84,-220.655,0	1/1:104:0,104:0:0:104:3700:-333.203,-31.3071,0	0/1:108:36,72:36:1264:72:2515:-194.091,0,-81.5485	0/1:114:48,66:48:1701:66:2336:-176.18,0,-119.057	1/1:285:0,285:0:0:285:10102:-909.123,-85.7936,0	0/1:44:17,27:17:604:27:945:-72.1164,0,-41.4453	0/1:117:45,72:45:1603:72:2510:-190.931,0,-109.339	1/1:184:0,184:0:0:184:6448:-580.417,-55.3895,0	1/1:72:0,72:0:0:72:2542:-229.031,-21.6742,0	0/1:131:45,86:45:1612:86:3014:-232.052,0,-105.935	0/1:132:63,69:63:2222:69:2445:-180.568,0,-160.508	1/1:396:0,396:0:0:396:13892:-1250.06,-119.208,0	1/1:263:0,263:0:0:263:9279:-834.596,-79.1709,0
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chr04	19135220	.	G	A	44657.9	PASS	AB=0.497734;ABP=3.22682;AC=46;AF=0.247312;AN=186;AO=2432;CIGAR=1X;DP=9324;DPB=9324;DPRA=1.16593;EPP=5275.35;EPPR=14951.4;GTI=2;LEN=1;MEANALT=1.06;MQM=59.9252;MQMR=59.9969;NS=93;NUMALT=1;ODDS=0.200296;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86843;QR=244511;RO=6884;RPL=2321;RPP=4363.9;RPPR=12538.6;RPR=111;RUN=1;SAF=2322;SAP=4371.8;SAR=110;SRF=6594;SRP=12538.6;SRR=290;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:24,36:24:856:36:1272:-96.7211,0,-59.2993	0/0:91:91,0:91:3242:0:0:0,-27.3937,-292.001	0/0:173:173,0:173:6173:0:0:0,-52.0782,-555.666	0/0:144:144,0:144:5146:0:0:0,-43.3483,-463.281	0/0:74:73,1:73:2612:1:36:0,-18.6779,-231.73	0/0:62:61,0:61:2172:0:0:0,-18.3628,-195.384	0/1:110:52,58:52:1843:58:2048:-151.474,0,-133.036	0/0:96:95,1:95:3408:1:36:0,-25.3006,-303.336	0/1:103:44,59:44:1576:59:2116:-159.703,0,-111.125	0/0:90:90,0:90:3188:0:0:0,-27.0927,-287.144	0/0:89:89,0:89:3135:0:0:0,-26.7917,-282.376	0/0:118:118,0:118:4168:0:0:0,-35.5215,-375.306	0/0:78:78,0:78:2724:0:0:0,-23.4803,-245.405	0/0:96:96,0:96:3400:0:0:0,-28.8989,-306.215	0/1:72:33,39:33:1180:39:1395:-104.174,0,-84.8339	0/1:68:38,30:38:1327:30:1063:-75.5108,0,-99.2561	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/1:47:24,23:24:843:23:824:-60.3173,0,-62.0396	0/1:29:16,13:16:568:13:464:-33.3676,0,-42.722	0/1:231:128,103:128:4560:103:3692:-262.941,0,-341.028	0/1:137:62,75:62:2207:75:2684:-200.564,0,-157.654	0/1:144:35,109:35:1247:109:3904:-308.205,0,-69.1858	0/1:186:99,87:99:3532:87:3128:-225.668,0,-262.099	0/1:84:71,13:71:2503:13:460:-15.9553,0,-200.235	0/0:90:89,1:89:3164:1:36:0,-23.4944,-281.385	0/1:240:121,119:121:4317:119:4263:-311.599,0,-316.459	0/1:160:68,92:68:2427:92:3283:-247.525,0,-170.521	0/0:42:42,0:42:1452:0:0:0,-12.6433,-130.971	0/1:201:103,97:103:3656:97:3480:-252.845,0,-268.678	0/1:163:67,96:67:2392:96:3416:-258.564,0,-166.47	0/0:135:135,0:135:4831:0:0:0,-40.639,-434.944	.:.:.:.:.:.:.:.	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:202:202,0:202:7096:0:0:0,-60.8081,-638.71	0/0:173:173,0:173:6203:0:0:0,-52.0782,-558.365	0/1:63:36,27:36:1271:27:972:-68.833,0,-95.7272	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:142:80,61:80:2839:61:2180:-153.661,0,-212.942	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/1:188:88,100:88:3132:100:3552:-263.295,0,-225.514	0/1:67:36,31:36:1262:31:1091:-78.3073,0,-93.712	0/0:66:66,0:66:2333:0:0:0,-19.868,-210.229	0/1:104:48,56:48:1711:56:2000:-148.738,0,-122.968	0/1:109:61,48:61:2171:48:1705:-120.921,0,-162.844	0/1:175:87,88:87:3078:88:3160:-231.944,0,-224.569	0/0:94:94,0:94:3308:0:0:0,-28.2968,-297.938	0/0:160:160,0:160:5708:0:0:0,-48.1648,-513.838	0/0:138:138,0:138:4935:0:0:0,-41.5421,-444.3	0/0:16:15,0:15:536:0:0:0,-4.51545,-48.2152	0/0:127:127,0:127:4499:0:0:0,-38.2308,-405.08	0/1:84:41,43:41:1476:43:1540:-113.607,0,-107.85	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:172:95,77:95:3396:77:2768:-197.573,0,-254.078	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:16:12,4:12:409:4:144:-8.49714,0,-32.319	0/1:14:8,6:8:273:6:216:-15.5761,0,-20.6858	0/1:131:64,67:64:2265:67:2400:-176.822,0,-164.659	0/0:117:117,0:117:4157:0:0:0,-35.2205,-374.312	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:159:80,79:80:2841:79:2815:-205.726,0,-208.064	0/0:158:153,5:153:5433:5:180:0,-31.0107,-472.551	0/1:119:52,66:52:1859:66:2360:-176.777,0,-131.708	0/0:77:77,0:77:2740:0:0:0,-23.1793,-246.844	0/1:189:113,76:113:4007:76:2707:-186.979,0,-303.925	0/1:152:68,84:68:2436:84:3006:-225.013,0,-173.739	0/0:57:57,0:57:2015:0:0:0,-17.1587,-181.623	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.414	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/1:30:15,15:15:521:15:540:-39.9056,0,-38.1854	0/0:151:150,0:150:5324:0:0:0,-45.1545,-478.94	0/1:86:35,51:35:1247:51:1807:-137.022,0,-86.6455	0/0:171:171,0:171:6066:0:0:0,-51.4761,-546.046	0/0:130:130,0:130:4638:0:0:0,-39.1339,-417.583	0/1:141:76,65:76:2711:65:2308:-165.536,0,-201.788	0/1:138:69,69:69:2464:69:2468:-180.788,0,-180.472	0/1:21:9,12:9:324:12:428:-32.5372,0,-23.1842	0/0:87:86,1:86:3062:1:36:0,-22.5913,-272.211	0/0:120:120,0:120:4264:0:0:0,-36.1236,-383.939	0/0:197:197,0:197:7017:0:0:0,-59.3029,-631.595	0/0:63:63,0:63:2213:0:0:0,-18.9649,-199.434	0/1:79:46,33:46:1631:33:1159:-80.8169,0,-123.297	0/1:60:36,24:36:1259:24:856:-59.2993,0,-95.547	0/0:161:160,0:160:5654:0:0:0,-48.1648,-508.623	0/1:23:13,10:13:464:10:352:-25.0945,0,-35.1738	0/1:96:52,44:52:1864:44:1567:-112.422,0,-139.141	0/0:93:93,0:93:3272:0:0:0,-27.9958,-294.702	0/0:41:40,0:40:1411:0:0:0,-12.0412,-126.927	0/1:153:89,64:89:3143:64:2294:-160.664,0,-237.038	0/1:92:33,59:33:1166:59:2096:-161.213,0,-77.5508	0/0:113:113,0:113:4031:0:0:0,-34.0164,-362.979	0/0:102:102,0:102:3571:0:0:0,-30.7051,-321.602
chr04	19135295	.	T	A	178728	PASS	AB=0.57943;ABP=277.943;AC=142;AF=0.763441;AN=186;AO=8398;CIGAR=1X;DP=10531;DPB=10531;DPRA=0;EPP=18169.6;EPPR=4563.2;GTI=0;LEN=1;MEANALT=1.10753;MQM=59.9397;MQMR=59.992;NS=93;NUMALT=1;ODDS=0.775809;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=300183;QR=74170;RO=2120;RPL=8390;RPP=18169.6;RPPR=4563.2;RPR=8;RUN=1;SAF=0;SAP=18239;SAR=8398;SRF=0;SRP=4606.53;SRR=2120;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:28,45:28:981:45:1612:-123.387,0,-66.6258	1/1:117:0,117:0:0:117:4195:-377.73,-35.2205,0	1/1:170:0,170:0:0:170:6082:-547.482,-51.1751,0	1/1:274:0,274:0:0:274:9745:-876.995,-82.4822,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:42:0,42:0:0:42:1512:-136.371,-12.6433,0	0/1:127:44,83:44:1549:83:2960:-228.301,0,-101.469	1/1:149:1,147:1:36:147:5272:-471.014,-41.314,0	0/1:123:47,76:47:1657:76:2704:-206.577,0,-112.389	1/1:125:0,125:0:0:125:4454:-401.029,-37.6288,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:123:0,123:0:0:123:4408:-396.887,-37.0267,0	1/1:83:0,83:0:0:83:2966:-267.142,-24.9855,0	1/1:90:0,90:0:0:90:3236:-291.461,-27.0927,0	0/1:76:34,42:34:1224:42:1507:-113.046,0,-87.5888	0/1:96:59,37:59:2048:37:1332:-91.2835,0,-155.686	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:34:13,21:13:468:21:752:-57.7712,0,-32.2246	0/1:55:29,26:29:1028:26:932:-67.6422,0,-76.2764	0/1:140:68,72:68:2379:72:2588:-191.007,0,-172.22	0/1:202:78,124:78:2792:124:4448:-339.682,0,-190.712	0/1:103:61,42:61:2079:42:1497:-104.016,0,-156.363	0/1:114:42,72:42:1478:72:2576:-197.772,0,-98.9931	1/1:134:9,125:9:320:125:4463:-372.697,-11.1957,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:266:92,174:92:3191:174:6219:-479.721,0,-207.278	0/1:203:56,147:56:1902:147:5273:-413.594,0,-110.338	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:327:141,186:141:4874:186:6665:-501.488,0,-340.377	0/1:147:52,95:52:1815:95:3389:-260.973,0,-119.374	1/1:278:1,277:1:36:277:9916:-888.755,-80.0881,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:231:0,229:0:0:229:8196:-736.75,-68.9359,0	1/1:121:0,121:0:0:121:4332:-390.051,-36.4246,0	0/1:61:20,40:20:720:40:1435:-111.01,0,-46.7071	.:.:.:.:.:.:.:.	0/1:169:76,93:76:2591:93:3306:-246.883,0,-182.559	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:178:83,95:83:2908:95:3382:-251.01,0,-208.369	0/1:81:41,39:41:1476:39:1396:-101.497,0,-108.694	1/1:71:0,71:0:0:71:2530:-227.949,-21.3731,0	0/1:105:32,73:32:1110:73:2620:-204.439,0,-68.5947	0/1:93:51,42:51:1756:42:1493:-106.667,0,-130.32	0/1:225:80,144:80:2803:144:5120:-393.152,0,-184.718	1/1:65:0,65:0:0:65:2324:-209.418,-19.567,0	1/1:182:1,181:1:36:181:6466:-578.369,-51.1892,0	1/1:122:2,120:2:57:120:4239:-376.268,-31.3124,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:85:0,85:0:0:85:3060:-275.628,-25.5876,0	0/1:83:25,58:25:896:58:2072:-161.765,0,-55.9749	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:167:71,96:71:2472:96:3409:-256.751,0,-172.457	1/1:70:0,70:0:0:70:2493:-224.622,-21.0721,0	0/1:7:5,2:5:165:2:72:-4.72951,0,-13.0664	0/1:15:6,9:6:212:9:324:-24.9895,0,-14.9093	0/1:80:24,56:24:864:56:2000:-156.191,0,-54.0002	1/1:106:0,106:0:0:106:3812:-343.247,-31.9092,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:213:105,108:105:3637:108:3872:-284.555,0,-263.414	1/1:251:1,250:1:36:250:8927:-799.809,-71.9603,0	0/1:96:27,69:27:956:69:2468:-193.475,0,-57.4569	1/1:105:0,105:0:0:105:3740:-336.8,-31.6082,0	0/1:294:127,167:127:4352:167:5961:-447.988,0,-303.35	0/1:145:82,63:82:2838:63:2245:-158.639,0,-212.004	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:155:0,155:0:0:155:5510:-496.027,-46.6597,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:13:4,9:4:144:9:316:-24.8655,0,-9.40023	1/1:211:0,211:0:0:211:7530:-677.741,-63.5173,0	0/1:123:48,75:48:1659:75:2665:-203.012,0,-112.564	1/1:318:0,316:0:0:316:11287:-1015.15,-95.1255,0	1/1:191:0,191:0:0:191:6794:-611.533,-57.4967,0	0/1:107:36,71:36:1262:71:2532:-195.922,0,-81.6682	0/1:122:51,70:51:1824:70:2478:-186.487,0,-127.657	0/1:20:5,15:5:180:15:529:-41.92,0,-10.5315	1/1:82:0,82:0:0:82:2939:-264.742,-24.6845,0	1/1:138:0,138:0:0:138:4944:-445.099,-41.5421,0	1/1:273:0,273:0:0:273:9750:-876.426,-82.1812,0	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	0/1:85:43,42:43:1533:42:1497:-109.435,0,-112.674	0/1:60:30,30:30:1080:30:1080:-79.4515,0,-79.4515	1/1:169:0,169:0:0:169:6068:-546.219,-50.8741,0	0/1:41:18,23:18:644:23:819:-61.6893,0,-45.9484	0/1:100:47,52:47:1665:52:1872:-138.597,0,-119.974	1/1:133:0,132:0:0:132:4715:-424.142,-39.736,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:134:58,76:58:2076:76:2716:-204.346,0,-146.772	0/1:87:54,33:54:1929:33:1188:-81.039,0,-147.695	1/1:184:0,182:0:0:182:6508:-585.415,-54.7875,0	1/1:138:0,138:0:0:138:4941:-444.752,-41.5421,0
chr04	19136996	.	A	G	99830.2	PASS	AB=0.514192;ABP=7.81788;AC=142;AF=0.763441;AN=186;AO=4726;CIGAR=1X;DP=6074;DPB=6074;DPRA=0;EPP=10265.4;EPPR=2917.13;GTI=2;LEN=1;MEANALT=1.06452;MQM=59.9645;MQMR=59.9873;NS=93;NUMALT=1;ODDS=0.664685;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168242;QR=48094;RO=1342;RPL=0;RPP=10265.4;RPPR=2917.13;RPR=4726;RUN=1;SAF=4726;SAP=10265.4;SAR=0;SRF=1342;SRP=2917.13;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:19,18:19:669:18:629:-45.7957,0,-49.3958	1/1:69:0,69:0:0:69:2450:-220.752,-20.7711,0	1/1:113:0,113:0:0:113:4034:-363.247,-34.0164,0	1/1:111:3,108:3:108:108:3848:-336.437,-23.3392,0	1/1:45:0,45:0:0:45:1593:-143.658,-13.5464,0	1/1:36:1,35:1:36:35:1247:-108.923,-7.23881,0	0/1:79:29,50:29:1044:50:1780:-136.699,0,-70.4934	1/1:69:0,69:0:0:69:2441:-219.942,-20.7711,0	0/1:65:29,36:29:1044:36:1273:-95.3022,0,-74.7079	1/1:85:0,85:0:0:85:2991:-269.42,-25.5876,0	1/1:54:0,54:0:0:54:1930:-173.976,-16.2556,0	1/1:100:0,100:0:0:100:3553:-319.974,-30.103,0	1/1:82:0,82:0:0:82:2952:-265.913,-24.6845,0	1/1:57:0,57:0:0:57:2022:-182.251,-17.1587,0	0/1:73:35,38:35:1260:38:1364:-101.086,0,-91.7303	0/1:41:25,16:25:881:16:576:-39.8328,0,-67.2636	1/1:73:1,72:1:36:72:2565:-227.5,-18.3769,0	0/1:33:14,19:14:504:19:684:-51.9563,0,-35.7641	0/1:49:23,26:23:824:26:934:-69.6288,0,-59.7328	0/1:87:31,56:31:1112:56:2008:-154.804,0,-74.2017	0/1:144:74,70:74:2664:70:2492:-181.177,0,-196.657	0/1:31:18,13:18:648:13:453:-31.7677,0,-49.32	0/1:67:33,34:33:1165:34:1200:-88.1338,0,-84.986	1/1:72:0,72:0:0:72:2535:-228.397,-21.6742,0	1/1:54:0,54:0:0:54:1929:-173.881,-16.2556,0	0/1:135:61,74:61:2188:74:2612:-194.686,0,-156.547	0/1:130:78,52:78:2804:52:1823:-125.213,0,-213.465	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:141:72,69:72:2584:69:2461:-179.297,0,-190.364	0/1:39:20,19:20:720:19:677:-49.5119,0,-53.3886	1/1:84:0,84:0:0:84:2956:-266.271,-25.2865,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	.:.:.:.:.:.:.:.	1/1:18:0,18:0:0:18:629:-56.9338,-5.41854,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:163:0,162:0:0:162:5812:-522.831,-48.7669,0	1/1:43:0,43:0:0:43:1499:-135.197,-12.9443,0	0/1:54:21,33:21:756:33:1188:-90.973,0,-52.1116	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:173:87,86:87:3128:86:3073:-224.72,0,-229.667	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:120:50,70:50:1800:70:2504:-189.431,0,-126.159	0/1:58:32,26:32:1148:26:921:-65.7455,0,-86.1701	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	0/1:44:15,29:15:540:29:1024:-79.2252,0,-35.6912	0/1:32:15,17:15:536:17:593:-44.0618,0,-38.9419	0/1:84:45,39:45:1605:39:1404:-101.286,0,-119.449	1/1:74:1,73:1:36:73:2590:-229.748,-18.6779,0	1/1:65:0,65:0:0:65:2306:-207.798,-19.567,0	1/1:76:0,76:0:0:76:2705:-243.693,-22.8783,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	1/1:64:0,64:0:0:64:2296:-206.9,-19.2659,0	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:49:21,28:21:756:28:1004:-75.9254,0,-53.6168	1/1:40:0,40:0:0:40:1417:-127.825,-12.0412,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:12:2,10:2:72:10:330:-26.405,0,-3.22436	0/1:64:34,30:34:1197:30:1056:-76.085,0,-88.7675	1/1:84:0,83:0:0:83:2970:-267.169,-24.9855,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:74:37,37:37:1324:37:1298:-94.8409,0,-97.1859	1/1:96:0,96:0:0:96:3405:-306.665,-28.8989,0	0/1:40:15,25:15:540:25:900:-69.2798,0,-36.8953	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:115:63,52:63:2245:52:1859:-132.971,0,-167.693	0/1:71:48,23:48:1720:23:828:-53.471,0,-133.712	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	1/1:48:0,47:0:0:47:1654:-148.784,-14.1484,0	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	0/1:16:6,10:6:216:10:345:-26.5643,0,-14.974	1/1:86:1,85:1:36:85:3027:-269.062,-22.2903,0	0/1:48:26,22:26:932:22:769:-55.0792,0,-69.7494	1/1:122:0,122:0:0:122:4360:-392.574,-36.7257,0	1/1:95:0,95:0:0:95:3401:-306.303,-28.5979,0	0/1:59:26,33:26:936:33:1173:-88.1148,0,-66.7987	0/1:52:17,35:17:604:35:1233:-95.6185,0,-39.037	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	1/1:77:0,76:0:0:76:2728:-245.403,-22.8783,0	1/1:65:0,65:0:0:65:2305:-207.71,-19.567,0	1/1:167:0,166:0:0:166:5914:-532.009,-49.971,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	0/1:52:26,26:26:936:26:936:-68.9059,0,-68.9059	0/1:58:14,43:14:504:43:1533:-120.782,0,-28.2168	1/1:154:0,154:0:0:154:5476:-492.956,-46.3586,0	0/1:43:23,20:23:824:20:705:-50.8285,0,-61.539	0/1:68:36,32:36:1296:32:1144:-82.7995,0,-96.4739	1/1:81:1,80:1:27:80:2857:-254.666,-21.6836,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:92:38,54:38:1353:54:1921:-145.47,0,-94.3736	0/1:67:50,17:50:1800:17:597:-33.8871,0,-142.113	1/1:74:0,74:0:0:74:2640:-237.845,-22.2762,0	1/1:116:0,116:0:0:116:4153:-373.951,-34.9195,0
chr04	19137319	.	A	G	14336.1	PASS	AB=0.513723;ABP=5.75185;AC=45;AF=0.241935;AN=186;AO=883;CIGAR=1X;DP=3602;DPB=3602;DPRA=1.1879;EPP=1920.42;EPPR=5883.36;GTI=1;LEN=1;MEANALT=1.01923;MQM=59.9773;MQMR=59.9952;NS=93;NUMALT=1;ODDS=3.6005;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31345;QR=95298;RO=2712;RPL=883;RPP=1920.42;RPPR=5883.36;RPR=0;RUN=1;SAF=883;SAP=1920.42;SAR=0;SRF=2712;SRP=5892.04;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:6,10:6:204:10:360:-27.9278,0,-13.8769	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:29:29,0:29:1020:0:0:0,-8.72987,-92.1122	0/0:53:53,0:53:1845:0:0:0,-15.9546,-166.328	0/0:36:33,3:33:1176:3:108:0,-0.76191,-96.0726	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/1:50:20,30:20:682:30:1080:-82.4618,0,-46.6432	0/0:54:52,2:52:1828:2:72:0,-9.4189,-157.961	0/1:47:19,28:19:661:28:987:-74.9946,0,-45.6632	0/0:47:47,0:47:1652:0:0:0,-14.1484,-148.965	0/0:35:35,0:35:1227:0:0:0,-10.536,-110.733	0/0:31:31,0:31:1077:0:0:0,-9.33193,-97.236	0/0:28:28,0:28:976:0:0:0,-8.42884,-88.1497	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/1:28:13,15:13:450:15:527:-39.3313,0,-32.3997	0/1:27:14,13:14:483:13:456:-33.2454,0,-35.6695	0/0:36:36,0:36:1256:0:0:0,-10.8371,-113.339	0/1:18:9,9:9:320:9:316:-23.3603,0,-23.7238	0/1:24:9,15:9:320:15:528:-40.6266,0,-21.9176	0/1:39:13,26:13:464:26:936:-72.8193,0,-30.3573	0/1:52:28,24:28:975:24:846:-60.8042,0,-72.408	0/1:42:5,37:5:180:37:1299:-104.567,0,-3.9088	0/1:17:7,10:7:248:10:356:-27.2637,0,-17.5467	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.306	0/0:36:36,0:36:1260:0:0:0,-10.8371,-113.7	0/1:142:80,62:80:2771:62:2228:-158.038,0,-206.888	0/1:96:42,54:42:1488:54:1913:-143.546,0,-105.316	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/1:98:46,52:46:1636:52:1859:-138.088,0,-118.028	0/1:33:15,18:15:520:18:635:-47.543,0,-37.1939	0/0:32:31,0:31:1081:0:0:0,-9.33193,-97.3145	0/1:6:1,5:1:36:5:171:-13.9193,0,-1.79209	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:89:89,0:89:3142:0:0:0,-26.7917,-283.008	0/0:93:90,3:90:3151:3:108:0,-17.9206,-273.742	0/1:23:14,9:14:488:9:320:-22.2187,0,-37.3267	.:.:.:.:.:.:.:.	0/1:25:14,11:14:496:11:387:-27.6402,0,-37.4485	0/0:19:19,0:19:653:0:0:0,-5.71957,-59.0893	0/1:58:35,23:35:1221:23:824:-57.0236,0,-92.7317	0/1:26:17,9:17:608:9:320:-21.3156,0,-47.2252	0/0:17:17,0:17:591:0:0:0,-5.11751,-53.5116	0/1:36:13,23:13:452:23:820:-63.2854,0,-30.174	0/1:43:28,15:28:983:15:532:-35.2688,0,-75.8383	0/1:93:53,40:53:1856:40:1411:-99.2907,0,-139.321	0/0:59:59,0:59:2071:0:0:0,-17.7608,-186.661	0/0:40:40,0:40:1389:0:0:0,-12.0412,-125.302	0/0:78:77,0:77:2693:0:0:0,-23.1793,-242.333	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:22:13,9:13:449:9:324:-22.8832,0,-34.1148	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:30:18,12:18:636:12:428:-29.8279,0,-48.5371	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:46:30,16:30:1055:16:566:-37.4235,0,-81.4126	0/0:84:84,0:84:2974:0:0:0,-25.2865,-267.894	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:56:26,30:26:920:30:1062:-79.0323,0,-66.2594	0/0:96:95,1:95:3366:1:36:0,-25.3006,-299.56	0/1:26:16,10:16:564:10:360:-24.9175,0,-43.2635	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:52:23,29:23:820:29:1014:-75.9164,0,-58.469	0/1:66:19,47:19:668:47:1683:-131.888,0,-40.5777	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:33:33,0:33:1150:0:0:0,-9.93399,-103.802	0/0:44:43,1:43:1523:1:34:0,-9.84641,-133.963	0/1:15:10,5:10:344:5:164:-10.5623,0,-26.7766	0/0:75:74,1:74:2604:1:36:0,-18.979,-231.013	0/1:31:17,13:17:596:13:468:-33.1152,0,-44.6247	0/0:74:73,0:73:2553:0:0:0,-21.9752,-229.659	0/0:45:44,1:44:1560:1:36:0,-9.94807,-137.093	0/1:32:18,14:18:635:14:492:-34.9794,0,-47.844	0/1:48:18,30:18:628:30:1080:-83.0638,0,-42.396	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/0:38:38,0:38:1340:0:0:0,-11.4391,-120.9	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/0:123:122,0:122:4267:0:0:0,-36.7257,-383.933	0/0:51:51,0:51:1786:0:0:0,-15.3525,-161.021	0/1:33:20,13:20:704:13:451:-30.9858,0,-53.7505	0/1:26:16,10:16:559:10:356:-24.5545,0,-42.8108	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/1:22:11,11:11:388:11:392:-28.9974,0,-28.6347	0/1:29:17,12:17:591:12:407:-28.2251,0,-44.7854	0/0:37:36,1:36:1267:1:36:0,-7.53983,-110.734	0/0:24:23,0:23:820:0:0:0,-6.92369,-73.7628	0/1:55:25,30:25:876:30:1068:-79.8754,0,-62.5976	0/1:21:2,19:2:72:19:661:-53.49,0,-0.515092	0/0:29:28,0:28:971:0:0:0,-8.42884,-87.4188	0/0:31:31,0:31:1092:0:0:0,-9.33193,-98.5896
chr04	19137321	.	A	C	61169.4	PASS	AB=0.50197;ABP=3.07018;AC=144;AF=0.765957;AN=188;AO=2965;CIGAR=1X;DP=3860;DPB=3860;DPRA=0;EPP=6441.43;EPPR=1944.31;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9933;MQMR=59.9776;NS=94;NUMALT=1;ODDS=3.94342;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104352;QR=31946;RO=894;RPL=2965;RPP=6441.43;RPPR=1944.31;RPR=0;RUN=1;SAF=2965;SAP=6441.43;SAR=0;SRF=894;SRP=1944.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:12,8:12:423:8:280:-19.5187,0,-32.3845	1/1:29:0,29:0:0:29:1038:-93.7339,-8.72987,0	1/1:31:0,31:0:0:31:1086:-98.0476,-9.33193,0	1/1:56:0,56:0:0:56:1972:-177.754,-16.8577,0	1/1:40:3,37:3:108:37:1302:-107.405,-1.96603,0	1/1:21:0,21:0:0:21:728:-65.8377,-6.32163,0	0/1:53:31,22:31:1116:22:784:-54.9293,0,-84.7971	1/1:59:2,57:2:72:57:1976:-171.273,-10.924,0	0/1:48:26,22:26:928:22:769:-55.0779,0,-69.3888	1/1:47:0,47:0:0:47:1664:-150.047,-14.1484,0	1/1:37:0,37:0:0:37:1269:-114.505,-11.1381,0	1/1:33:0,33:0:0:33:1167:-105.336,-9.93399,0	1/1:33:0,33:0:0:33:1171:-105.697,-9.93399,0	1/1:38:0,38:0:0:38:1309:-118.104,-11.4391,0	0/1:29:15,14:15:540:14:481:-34.8852,0,-40.2067	0/1:28:13,15:13:464:15:518:-38.5167,0,-33.6687	1/1:37:0,37:0:0:37:1302:-117.48,-11.1381,0	0/1:18:9,9:9:320:9:316:-23.3603,0,-23.7238	0/1:24:15,9:15:536:9:315:-21.4625,0,-41.3501	0/1:41:27,14:27:972:14:500:-32.9939,0,-75.4557	0/1:54:25,29:25:900:29:1022:-76.0353,0,-65.0654	0/1:43:38,5:38:1356:5:165:-2.22931,0,-109.396	0/1:18:10,8:10:351:8:288:-20.8489,0,-26.5081	1/1:36:0,36:0:0:36:1271:-114.692,-10.8371,0	1/1:43:0,43:0:0:43:1516:-136.733,-12.9443,0	0/1:147:62,85:62:2224:85:3022:-227.959,0,-156.173	0/1:103:56,47:56:2012:47:1658:-118.5,0,-150.347	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:103:53,50:53:1908:50:1763:-127.947,0,-140.991	0/1:34:18,16:18:648:16:572:-41.5784,0,-48.4169	1/1:39:0,39:0:0:39:1377:-124.226,-11.7402,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:95:0,95:0:0:95:3323:-299.291,-28.5979,0	1/1:104:0,104:0:0:104:3676:-331.043,-31.3071,0	0/1:26:10,16:10:360:16:576:-44.3482,0,-24.9175	1/1:2:0,2:0:0:2:53:-5.0343,-0.60206,0	0/1:29:11,18:11:388:18:648:-49.922,0,-26.5275	1/1:19:0,19:0:0:19:665:-60.1728,-5.71957,0	0/1:64:25,39:25:896:39:1385:-105.681,0,-61.6944	0/1:27:10,17:10:360:17:600:-46.2014,0,-24.6165	1/1:21:1,20:1:36:20:708:-60.4473,-2.72336,0	0/1:42:23,19:23:824:19:671:-48.0732,0,-61.8401	0/1:44:14,30:14:485:30:1080:-84.2679,0,-30.7317	0/1:94:39,55:39:1396:55:1916:-144.416,0,-97.6423	1/1:65:0,64:0:0:64:2256:-202.942,-19.2659,0	1/1:46:0,46:0:0:46:1624:-146.449,-13.8474,0	1/1:84:0,84:0:0:84:2914:-262.495,-25.2865,0	1/1:2:0,2:0:0:2:59:-5.60414,-0.60206,0	1/1:62:0,62:0:0:62:2192:-197.544,-18.6639,0	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:37:13,24:13:451:24:836:-64.4166,0,-29.7817	1/1:18:0,18:0:0:18:631:-57.1157,-5.41854,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:50:17,33:17:608:33:1171:-90.6452,0,-40.0005	1/1:86:0,86:0:0:86:3053:-274.999,-25.8886,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:59:29,30:29:1036:30:1057:-77.6782,0,-75.7931	1/1:102:1,101:1:36:101:3552:-316.293,-27.1068,0	0/1:28:11,17:11:392:17:603:-46.1707,0,-27.1912	1/1:22:0,22:0:0:22:768:-69.4376,-6.62266,0	0/1:51:29,22:29:1036:22:769:-54.1761,0,-78.2014	0/1:69:47,22:47:1684:22:775:-49.3001,0,-131.076	1/1:9:0,9:0:0:9:312:-28.4154,-2.70927,0	1/1:33:0,33:0:0:33:1170:-105.606,-9.93399,0	1/1:47:0,47:0:0:47:1673:-150.857,-14.1484,0	0/1:15:5,10:5:176:10:360:-28.2289,0,-11.6115	1/1:84:1,83:1:36:83:2916:-259.075,-21.6882,0	0/1:34:13,21:13:468:21:751:-57.6809,0,-32.2246	1/1:84:1,83:1:36:83:2927:-260.064,-21.6882,0	1/1:52:0,52:0:0:52:1838:-165.699,-15.6536,0	0/1:33:14,19:14:500:19:680:-51.5952,0,-35.4022	0/1:50:30,20:30:1038:20:720:-50.0773,0,-78.6736	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	1/1:45:0,45:0:0:45:1599:-144.199,-13.5464,0	1/1:24:0,24:0:0:24:847:-76.5487,-7.22472,0	1/1:129:0,129:0:0:129:4529:-407.779,-38.8329,0	1/1:50:0,50:0:0:50:1734:-156.338,-15.0515,0	0/1:35:14,21:14:495:21:720:-54.5797,0,-34.347	0/1:26:10,16:10:360:16:564:-43.2635,0,-24.9175	1/1:56:0,56:0:0:56:1948:-175.591,-16.8577,0	0/1:27:11,16:11:396:16:567:-43.2338,0,-27.8549	0/1:29:13,16:13:468:16:560:-41.9989,0,-33.7298	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:26:0,26:0:0:26:910:-82.2141,-7.82678,0	0/1:56:31,25:31:1099:25:864:-61.2146,0,-82.3618	0/1:21:19,2:19:680:2:68:-0.136079,0,-55.2075	1/1:32:0,32:0:0:32:1105:-99.7537,-9.63296,0	1/1:34:0,34:0:0:34:1191:-107.494,-10.235,0
chr04	19358248	.	CAC	TAT,TAC	151539	PASS	AB=0.531605,0.460821;ABP=32.7955,48.7807;AC=144,44;AF=0.765957,0.234043;AN=188;AO=5598,1590;CIGAR=1X1M1X,1X2M;DP=7261;DPB=7261;DPRA=0,1.01694;EPP=12158.9,3446.97;EPPR=44.1879;GTI=2;LEN=3,1;MEANALT=1.67021,2.23404;MQM=59.6091,59.9887;MQMR=46.4074;NS=94;NUMALT=2;ODDS=0.457441;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=197440,56733;QR=1820;RO=54;RPL=5598,1589;RPP=12158.9,3446.97;RPPR=120.27;RPR=0,1;RUN=1,1;SAF=0,0;SAP=12158.9,3455.65;SAR=5598,1590;SRF=43;SRP=44.1879;SRR=11;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:17:1,13,3:1:34:13,3:459,108:-43.1783,-6.10629,-4.91622,-34.6658,0,-36.4906	1/1:74:2,72,0:2:72:72,0:2536,0:-221.603,-15.4839,0,-222.205,-21.6742,-228.038	1/1:104:1,103,0:1:25:103,0:3638,0:-325.084,-28.8082,0,-325.385,-31.0061,-327.332	1/1:204:1,203,0:1:28:203,0:7170,0:-642.376,-58.6155,0,-642.677,-61.1091,-644.89	1/1:13:0,13,0:0:0:13,0:441,0:-40.0132,-3.91339,0,-40.0132,-3.91339,-40.0132	1/1:22:0,22,0:0:0:22,0:783,0:-70.7941,-6.62266,0,-70.7941,-6.62266,-70.7941	1/2:71:0,49,22:0:0:49,22:1724,792:-205.313,-64.983,-50.2325,-140.688,0,-134.065	1/1:74:0,74,0:0:0:74,0:2581,0:-232.521,-22.2762,0,-232.521,-22.2762,-232.521	1/2:63:0,37,26:0:0:37,26:1294,928:-181.262,-76.0115,-64.8734,-105.604,0,-97.7775	1/1:81:1,79,0:1:36:79,0:2768,0:-245.822,-20.8339,0,-246.123,-23.7814,-249.032	1/1:40:1,39,0:1:36:39,0:1385,0:-121.337,-8.44293,0,-121.638,-11.7402,-124.576	1/1:84:2,80,0:2:68:80,0:2819,0:-247.455,-18.5733,0,-248.057,-24.0824,-253.536	1/1:64:0,64,0:0:0:64,0:2257,0:-203.273,-19.2659,0,-203.273,-19.2659,-203.273	1/1:58:2,56,0:2:69:56,0:1986,0:-172.484,-10.9524,0,-173.086,-16.8577,-178.648	1/2:49:1,27,21:1:34:27,21:947,737:-133.996,-57.2311,-51.8608,-74.3188,0,-70.7548	1/2:70:1,36,33:1:36:36,33:1274,1180:-198.441,-94.9836,-85.5429,-102.524,0,-93.9869	1/1:42:2,39,0:2:72:39,0:1383,0:-117.992,-5.92197,0,-118.594,-11.7402,-124.412	1/2:31:0,15,16:0:0:15,16:540,572:-91.0571,-46.9969,-42.4815,-44.4187,0,-39.6023	1/2:22:1,12,9:1:36:12,9:412,324:-56.6599,-23.5308,-22.8272,-30.5169,0,-30.7178	1/2:173:2,102,69:2:70:102,69:3569,2468:-486.946,-197.217,-170.633,-286.3,0,-269.65	1/2:194:2,138,54:2:72:138,54:4892,1927:-549.16,-151.255,-115.551,-392.667,0,-382.25	1/2:47:0,19,28:0:0:19,28:665,1000:-135.988,-81.8865,-76.167,-54.454,0,-46.0252	1/2:109:0,71,38:0:0:71,38:2538,1360:-318.19,-111.261,-89.8883,-207.286,0,-195.847	1/1:42:1,36,4:1:36:36,4:1259,129:-110.159,-8.02637,0,-100.062,-0.455037,-101.666	1/1:41:0,41,0:0:0:41,0:1438,0:-129.704,-12.3422,0,-129.704,-12.3422,-129.704	1/2:159:1,86,72:1:30:86,72:3018,2572:-452.656,-207.36,-183.867,-243.256,0,-223.977	1/2:152:1,79,70:1:36:79,70:2762,2500:-425.367,-201.002,-180.13,-221.839,0,-203.676	1/1:18:0,18,0:0:0:18,0:642,0:-58.0926,-5.41854,0,-58.0926,-5.41854,-58.0926	1/2:221:1,94,126:1:34:94,126:3328,4465:-631.773,-360.999,-335.454,-268.339,0,-233.16	1/2:120:0,57,63:0:0:57,63:2028,2249:-348.976,-183.707,-166.548,-165.625,0,-146.661	1/1:101:0,100,0:0:0:100,0:3518,0:-316.584,-30.103,0,-316.584,-30.103,-316.584	1/2:4:0,3,1:0:0:3,1:100,36:-11.3708,-3.29724,-2.39415,-8.42677,0,-8.12574	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:1:0,1,0:0:0:1,0:34,0:-3.39891,-0.30103,0,-3.39891,-0.30103,-3.39891	1/1:3:0,3,0:0:0:3,0:106,0:-9.8891,-0.90309,0,-9.8891,-0.90309,-9.8891	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:165:2,163,0:2:72:163,0:5792,0:-514.586,-42.8816,0,-515.188,-49.0679,-521.017	1/1:119:0,119,0:0:0:119,0:4185,0:-376.803,-35.8226,0,-376.803,-35.8226,-376.803	1/2:32:0,16,16:0:0:16,16:570,576:-93.7994,-47.3585,-42.542,-46.7988,0,-41.9823	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:125:0,55,68:0:0:55,68:1946,2430:-356.475,-198.165,-181.608,-158.343,0,-137.873	1/1:24:0,24,0:0:0:24,0:857,0:-77.4409,-7.22472,0,-77.4409,-7.22472,-77.4409	1/2:53:0,30,23:0:0:30,23:1066,820:-154.065,-67.1988,-58.1679,-87.2215,0,-80.2978	1/2:63:1,33,29:1:36:33,29:1142,1040:-174.37,-81.8872,-74.8907,-89.839,0,-84.047	1/1:59:1,58,0:1:36:58,0:2065,0:-182.443,-14.2581,0,-182.744,-17.4597,-185.596	1/2:74:0,40,34:0:0:40,34:1412,1216:-214.45,-99.5115,-87.4703,-115.294,0,-105.059	1/2:60:0,21,38:0:0:21,38:748,1360:-171.84,-110.902,-104.58,-60.9355,0,-49.4964	1/2:134:0,64,69:0:0:64,69:2258,2456:-383.893,-200.318,-181.052,-183.727,0,-162.956	1/1:83:2,81,0:2:57:81,0:2845,0:-250.965,-19.6623,0,-251.567,-24.3834,-256.006	1/1:145:0,145,0:0:0:145,0:5109,0:-459.941,-43.6494,0,-459.941,-43.6494,-459.941	1/1:118:0,118,0:0:0:118,0:4150,0:-373.678,-35.5215,0,-373.678,-35.5215,-373.678	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:80:1,79,0:1:36:79,0:2776,0:-246.5,-20.5339,0,-246.801,-23.7814,-249.694	1/2:87:1,48,38:1:21:48,38:1703,1360:-247.854,-109.463,-96.5983,-137.249,0,-127.396	1/1:18:0,18,0:0:0:18,0:646,0:-58.4698,-5.41854,0,-58.4698,-5.41854,-58.4698	1/2:141:0,74,67:0:0:74,67:2585,2376:-404.18,-193.93,-171.654,-210.602,0,-190.433	1/1:28:0,28,0:0:0:28,0:981,0:-88.596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chr04	19369505	.	C	G	43214.3	PASS	AB=0.469977;ABP=46.6908;AC=45;AF=0.239362;AN=188;AO=2628;CIGAR=1X;DP=10991;DPB=10991;DPRA=1.33622;EPP=5709.64;EPPR=18145.7;GTI=2;LEN=1;MEANALT=1.12245;MQM=59.9863;MQMR=59.9864;NS=94;NUMALT=1;ODDS=1.2111;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93714;QR=297341;RO=8355;RPL=2628;RPP=5709.64;RPPR=18145.7;RPR=0;RUN=1;SAF=2628;SAP=5709.64;SAR=0;SRF=8355;SRP=18145.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:101:62,39:62:2211:39:1404:-96.2552,0,-168.85	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/0:224:223,0:223:7877:0:0:0,-67.1297,-708.598	0/0:256:256,0:256:9122:0:0:0,-77.0637,-820.954	0/0:134:130,3:130:4590:3:108:0,-30.3216,-403.19	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/1:94:45,49:45:1620:49:1756:-130.027,0,-117.793	0/0:257:257,0:257:9102:0:0:0,-77.3647,-819.157	0/1:142:73,69:73:2608:69:2447:-177.739,0,-192.222	0/0:91:91,0:91:3225:0:0:0,-27.3937,-290.47	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/0:101:101,0:101:3575:0:0:0,-30.404,-321.958	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.548	0/1:55:33,22:33:1180:22:792:-55.049,0,-89.9514	0/1:55:27,28:27:968:28:996:-73.3982,0,-70.8807	0/0:40:40,0:40:1419:0:0:0,-12.0412,-128.007	0/1:30:11,19:11:392:19:671:-51.6849,0,-26.5892	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	0/1:299:181,118:181:6475:118:4219:-289.882,0,-492.799	0/1:173:107,66:107:3828:66:2356:-160.221,0,-292.639	0/1:184:63,120:63:2218:120:4263:-328.398,0,-144.434	0/1:209:124,85:124:4385:85:3048:-211.634,0,-331.909	0/1:130:117,13:117:4185:13:468:-3.32575,0,-337.696	0/0:218:218,0:218:7760:0:0:0,-65.6245,-698.432	0/1:273:144,129:144:5155:129:4583:-330.454,0,-381.909	0/1:332:197,135:197:7032:135:4817:-333.743,0,-533	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/1:381:203,177:203:7200:177:6339:-455.849,0,-533.305	0/1:149:64,85:64:2272:85:3019:-227.085,0,-159.887	0/0:94:94,0:94:3331:0:0:0,-28.2968,-300.006	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:38:22,16:22:780:16:576:-40.7358,0,-59.0839	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:30:30,0:30:1059:0:0:0,-9.0309,-95.6204	0/0:187:187,0:187:6615:0:0:0,-56.2926,-595.412	0/0:200:200,0:200:7101:0:0:0,-60.206,-639.15	0/1:49:26,23:26:919:23:811:-58.5595,0,-68.2757	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:175:95,80:95:3398:80:2856:-204.598,0,-253.353	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:191:63,128:63:2241:128:4545:-351.722,0,-144.455	0/1:39:16,23:16:576:23:824:-62.7431,0,-40.4348	0/0:60:60,0:60:2108:0:0:0,-18.0618,-189.987	0/1:173:83,90:83:2969:90:3223:-238.208,0,-215.363	0/1:214:103,111:103:3666:111:3958:-291.991,0,-265.723	0/1:234:137,96:137:4876:96:3419:-237.553,0,-368.62	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:138:138,0:138:4917:0:0:0,-41.5421,-442.682	0/0:197:197,0:197:7034:0:0:0,-59.3029,-633.123	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:153:153,0:153:5465:0:0:0,-46.0576,-491.977	0/1:94:41,53:41:1458:53:1900:-142.981,0,-103.218	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:176:109,67:109:3795:67:2364:-160.036,0,-288.768	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/1:27:17,10:17:608:10:356:-24.2534,0,-46.7931	0/1:16:12,4:12:414:4:144:-8.49714,0,-32.7725	0/1:94:42,50:42:1480:50:1788:-133.167,0,-105.457	0/0:86:86,0:86:3058:0:0:0,-25.8886,-275.449	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:180:91,89:91:3221:89:3187:-232.868,0,-235.925	0/0:325:324,1:324:11560:1:36:0,-94.2365,-1036.67	0/1:67:42,24:42:1508:24:856:-57.1334,0,-115.787	0/0:135:135,0:135:4806:0:0:0,-40.639,-432.695	0/1:253:144,109:144:5140:109:3886:-273.773,0,-386.58	0/1:203:65,138:65:2280:138:4900:-380.042,0,-144.242	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:223:223,0:223:7900:0:0:0,-67.1297,-711.027	0/1:118:76,42:76:2724:42:1507:-100.403,0,-209.882	0/0:183:183,0:183:6528:0:0:0,-55.0885,-587.603	0/0:152:152,0:152:5444:0:0:0,-45.7566,-490.086	0/1:160:81,79:81:2887:79:2809:-204.883,0,-211.902	0/1:135:86,49:86:3046:49:1760:-118.045,0,-233.729	0/1:21:15,6:15:540:6:216:-13.4689,0,-42.6149	0/0:164:164,0:164:5832:0:0:0,-49.3689,-524.992	0/0:127:127,0:127:4532:0:0:0,-38.2308,-408.046	0/0:369:368,1:368:13129:1:32:0,-107.881,-1178.22	0/0:113:113,0:113:4026:0:0:0,-34.0164,-362.529	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:37:18,19:18:648:19:680:-50.3911,0,-47.5138	0/0:124:124,0:124:4386:0:0:0,-37.3277,-394.915	0/1:24:12,12:12:424:12:423:-31.1803,0,-31.2717	0/1:54:26,28:26:936:28:1000:-74.0598,0,-68.3038	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:55:19,36:19:680:36:1256:-96.7837,0,-44.9725	0/1:95:31,64:31:1093:64:2292:-177.944,0,-70.0798	0/0:107:106,1:106:3767:1:36:0,-28.6119,-335.63	0/0:87:87,0:87:3098:0:0:0,-26.1896,-279.047
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chr04	19422468	.	A	C	101806	PASS	AB=0.528777;ABP=25.0062;AC=140;AF=0.752688;AN=186;AO=4841;CIGAR=1X;DP=6293;DPB=6293;DPRA=34.5549;EPP=10515.1;EPPR=3121.3;GTI=2;LEN=1;MEANALT=1.04396;MQM=54.9428;MQMR=59.6858;NS=93;NUMALT=1;ODDS=0.391902;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173078;QR=51951;RO=1448;RPL=4841;RPP=10515.1;RPPR=3121.3;RPR=0;RUN=1;SAF=0;SAP=10515.1;SAR=4841;SRF=0;SRP=3147.3;SRR=1448;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:10,18:10:356:18:625:-48.0886,0,-23.9511	1/1:80:0,80:0:0:80:2851:-256.142,-24.0824,0	1/1:108:0,108:0:0:108:3857:-346.601,-32.5112,0	1/1:169:0,169:0:0:169:6063:-544.817,-50.8741,0	1/1:58:1,57:1:36:57:2040:-179.942,-13.8615,0	1/1:42:0,42:0:0:42:1504:-135.277,-12.6433,0	0/1:47:23,24:23:824:24:864:-63.7915,0,-60.3349	1/1:108:1,107:1:36:107:3817:-338.99,-28.913,0	0/1:66:21,45:21:747:45:1620:-125.964,0,-47.6762	1/1:83:0,83:0:0:83:2946:-264.983,-24.9855,0	1/1:56:0,56:0:0:56:1992:-179.339,-16.8577,0	1/1:66:0,66:0:0:66:2365:-212.308,-19.868,0	1/1:36:0,36:0:0:36:1292:-116.44,-10.8371,0	1/1:70:0,70:0:0:70:2518:-226.227,-21.0721,0	0/1:43:19,24:19:684:24:855:-64.2657,0,-48.946	0/1:40:22,18:22:792:18:644:-45.8631,0,-59.5645	1/1:51:0,51:0:0:51:1823:-163.998,-15.3525,0	0/1:29:14,15:14:504:15:540:-40.0338,0,-36.9645	0/1:24:6,18:6:216:18:644:-50.9909,0,-12.5658	0/1:74:31,43:31:1112:43:1525:-115.013,0,-78.1104	0/1:104:50,54:50:1800:54:1926:-141.919,0,-130.776	0/1:61:26,35:26:932:35:1252:-94.4981,0,-65.8337	0/1:83:37,46:37:1328:46:1641:-122.843,0,-94.8287	0/1:61:8,53:8:284:53:1896:-152.07,0,-7.54052	1/1:55:0,55:0:0:55:1967:-176.935,-16.5567,0	0/1:201:103,98:103:3704:98:3512:-255.579,0,-273.047	0/1:123:46,77:46:1652:77:2764:-211.561,0,-111.937	1/1:29:0,29:0:0:29:1036:-93.301,-8.72987,0	0/1:179:97,82:97:3484:82:2940:-210.322,0,-259.878	0/1:157:65,92:65:2332:92:3297:-248.654,0,-162.873	1/1:77:0,77:0:0:77:2734:-244.292,-23.1793,0	0/1:5:4,1:4:144:1:36:-2.08802,0,-11.8085	0/1:2:1,1:1:36:1:36:-2.99111,0,-2.99621	1/1:6:0,6:0:0:6:216:-19.7701,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.0004,-2.10721,0	1/1:6:0,6:0:0:6:216:-19.7701,-1.80618,0	1/1:120:0,120:0:0:120:4297:-386.618,-36.1236,0	1/1:96:0,95:0:0:95:3405:-304.009,-28.5979,0	0/1:34:11,23:11:396:23:819:-63.5164,0,-25.7117	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:97:49,48:49:1764:48:1701:-123.969,0,-129.844	1/1:17:0,17:0:0:17:612:-54.8383,-5.11751,0	0/1:116:55,61:55:1976:61:2188:-161.99,0,-142.697	0/1:46:16,30:16:567:30:1076:-82.9823,0,-37.5051	1/1:44:0,44:0:0:44:1580:-142.288,-13.2453,0	0/1:60:18,42:18:644:42:1497:-116.924,0,-40.227	0/1:81:38,43:38:1353:43:1540:-114.201,0,-97.671	0/1:122:53,69:53:1904:69:2476:-186.139,0,-134.91	1/1:76:0,76:0:0:76:2724:-245.037,-22.8783,0	1/1:117:0,117:0:0:117:4158:-374.05,-35.2205,0	1/1:105:1,104:1:36:104:3716:-330.922,-28.0099,0	1/1:5:0,5:0:0:5:180:-16.5401,-1.50515,0	1/1:137:1,136:1:36:136:4873:-434.424,-37.6428,0	0/1:32:15,17:15:536:17:612:-45.7096,0,-38.9419	1/1:9:0,9:0:0:9:320:-29.0102,-2.70927,0	0/1:114:58,55:58:2075:55:1967:-142.586,0,-152.44	1/1:20:0,20:0:0:20:716:-64.7222,-6.0206,0	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/1:11:9,2:9:324:2:72:-3.52348,0,-26.1936	0/1:98:38,59:38:1364:59:2101:-158.623,0,-93.4889	1/1:82:0,82:0:0:82:2937:-264.182,-24.6845,0	.:.:.:.:.:.:.:.	0/1:138:75,63:75:2700:63:2249:-160.825,0,-201.699	1/1:117:1,116:1:36:116:4137:-368.446,-31.6222,0	0/1:67:18,49:18:644:49:1722:-134.375,0,-38.1216	1/1:45:0,45:0:0:45:1616:-145.445,-13.5464,0	0/1:109:53,55:53:1892:55:1972:-144.709,0,-137.719	0/1:116:90,26:90:3221:26:932:-49.2198,0,-254.154	1/1:36:0,36:0:0:36:1292:-116.277,-10.8371,0	1/1:47:0,47:0:0:47:1687:-151.776,-14.1484,0	1/1:44:0,44:0:0:44:1571:-141.631,-13.2453,0	0/1:17:8,9:8:288:9:316:-23.6359,0,-21.1499	1/1:68:0,68:0:0:68:2413:-216.855,-20.47,0	0/1:55:41,14:41:1476:14:504:-28.9911,0,-116.563	1/1:136:0,136:0:0:136:4865:-437.135,-40.9401,0	1/1:123:0,123:0:0:123:4410:-396.216,-37.0267,0	0/1:77:27,50:27:968:50:1796:-138.451,0,-64.251	0/1:75:43,32:43:1544:32:1152:-81.2029,0,-116.676	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:84:0,84:0:0:84:3009:-270.341,-25.2865,0	1/1:51:0,51:0:0:51:1809:-162.924,-15.3525,0	1/1:145:0,145:0:0:145:5200:-467.623,-43.6494,0	1/1:43:0,43:0:0:43:1544:-139.086,-12.9443,0	1/1:47:0,47:0:0:47:1668:-150.142,-14.1484,0	0/1:27:18,9:18:648:9:324:-21.3568,0,-50.5241	1/1:89:1,88:1:36:88:3137:-278.696,-23.1934,0	0/1:22:11,11:11:396:11:392:-28.9623,0,-29.3601	0/1:48:27,21:27:972:21:752:-53.3617,0,-73.3384	1/1:37:0,37:0:0:37:1323:-118.348,-11.1381,0	1/1:45:0,45:0:0:45:1620:-145.764,-13.5464,0	0/1:119:52,67:52:1868:67:2392:-179.092,0,-132.577	0/1:50:32,18:32:1140:18:648:-43.5581,0,-87.8577	1/1:86:0,86:0:0:86:3064:-275.108,-25.8886,0	1/1:52:0,52:0:0:52:1853:-166.928,-15.6536,0
chr04	19597297	.	C	A	125917	PASS	AB=0.566968;ABP=127.781;AC=144;AF=0.774194;AN=186;AO=5966;CIGAR=1X;DP=7367;DPB=7367;DPRA=0;EPP=12958;EPPR=3019.19;GTI=3;LEN=1;MEANALT=1.08602;MQM=59.9854;MQMR=59.9821;NS=93;NUMALT=1;ODDS=0.998341;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211281;QR=49365;RO=1393;RPL=0;RPP=12958;RPPR=3019.19;RPR=5966;RUN=1;SAF=0;SAP=12958;SAR=5966;SRF=0;SRP=3027.87;SRR=1393;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:22,36:22:792:36:1267:-96.8722,0,-54.1058	1/1:69:2,67:2:68:67:2381:-208.089,-14.3134,0	1/1:109:0,109:0:0:109:3885:-349.844,-32.8123,0	1/1:173:0,173:0:0:173:6138:-552.522,-52.0782,0	1/1:42:0,42:0:0:42:1499:-135.204,-12.6433,0	1/1:48:0,48:0:0:48:1715:-154.549,-14.4494,0	0/1:94:38,55:38:1347:55:1955:-147.869,0,-93.174	1/1:122:1,121:1:36:121:4290:-382.678,-33.1274,0	0/1:57:27,30:27:935:30:1068:-79.2734,0,-67.3007	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:63:0,63:0:0:63:2213:-199.432,-18.9649,0	1/1:150:0,150:0:0:150:5252:-472.823,-45.1545,0	1/1:96:0,96:0:0:96:3401:-306.306,-28.8989,0	1/1:72:0,71:0:0:71:2472:-222.371,-21.3731,0	0/1:53:23,30:23:828:30:1062:-79.9351,0,-58.8895	0/1:58:31,27:31:1087:27:953:-68.6236,0,-80.6787	1/1:49:0,49:0:0:49:1748:-157.604,-14.7505,0	0/1:64:29,35:29:1032:35:1241:-92.7274,0,-73.9276	0/1:36:15,21:15:514:21:748:-56.8082,0,-35.7467	0/1:86:35,51:35:1238:51:1819:-138.102,0,-85.8343	0/1:130:41,89:41:1468:89:3148:-244.412,0,-93.2822	0/1:55:41,14:41:1464:14:500:-28.7795,0,-115.499	0/1:121:37,84:37:1319:84:2966:-230.747,0,-82.5865	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	0/1:140:56,84:56:1974:84:2953:-223.85,0,-135.786	0/1:188:80,108:80:2829:108:3867:-291.631,0,-198.255	1/1:44:1,43:1:36:43:1514:-132.954,-9.64705,0	0/1:137:66,71:66:2347:71:2534:-187.069,0,-170.248	0/1:107:31,76:31:1103:76:2716:-212.474,0,-67.3696	1/1:111:0,111:0:0:111:3948:-355.511,-33.4143,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:163:0,163:0:0:163:5726:-515.463,-49.0679,0	1/1:132:0,132:0:0:132:4630:-416.868,-39.736,0	0/1:72:30,42:30:1063:42:1476:-111.458,0,-74.3067	.:.:.:.:.:.:.:.	0/1:65:29,35:29:1036:35:1232:-91.5558,0,-73.9283	1/1:24:0,24:0:0:24:835:-75.4652,-7.22472,0	0/1:115:47,68:47:1651:68:2432:-184.517,0,-114.256	0/1:71:36,35:36:1275:35:1256:-91.9722,0,-93.6791	1/1:64:1,63:1:36:63:2211:-195.654,-15.6676,0	0/1:61:29,32:29:1032:32:1131:-83.7349,0,-74.8306	0/1:66:23,42:23:800:42:1508:-116.088,0,-52.3895	0/1:88:31,56:31:1072:56:1973:-151.293,0,-70.2361	1/1:86:0,86:0:0:86:3060:-275.628,-25.8886,0	1/1:158:0,158:0:0:158:5577:-502.058,-47.5627,0	1/1:53:0,53:0:0:53:1874:-168.936,-15.9546,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:90:0,90:0:0:90:3218:-289.842,-27.0927,0	0/1:65:32,33:32:1144:33:1175:-86.49,0,-83.7026	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:87:39,48:39:1396:48:1678:-125.113,0,-99.7495	1/1:46:0,46:0:0:46:1625:-146.537,-13.8474,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:2,7:2:68:7:248:-19.9549,0,-3.74844	0/1:67:28,39:28:1008:39:1366:-103.068,0,-70.8673	1/1:134:0,134:0:0:134:4740:-426.762,-40.338,0	1/1:6:0,6:0:0:6:205:-18.7836,-1.80618,0	0/1:138:61,77:61:2157:77:2730:-204.401,0,-152.854	1/1:151:0,151:0:0:151:5377:-484.06,-45.4555,0	0/1:38:11,27:11:396:27:964:-75.6377,0,-24.5436	1/1:92:0,91:0:0:91:3223:-290.023,-27.3937,0	0/1:110:61,49:61:2180:49:1718:-121.79,0,-163.353	0/1:90:45,45:45:1608:45:1599:-117.107,0,-117.917	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:63:0,63:0:0:63:2226:-200.604,-18.9649,0	1/1:80:0,80:0:0:80:2856:-257.278,-24.0824,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:193:3,189:3:108:189:6715:-594.354,-48.0824,0	0/1:69:20,49:20:720:49:1747:-136.742,0,-44.3577	1/1:151:0,151:0:0:151:5319:-478.846,-45.4555,0	1/1:122:0,122:0:0:122:4339:-390.679,-36.7257,0	0/1:51:22,29:22:788:29:1035:-78.1105,0,-55.8923	0/1:156:67,89:67:2377:89:3194:-240.722,0,-167.226	0/1:20:2,18:2:72:18:635:-51.4564,0,-0.816122	1/1:63:0,63:0:0:63:2239:-201.773,-18.9649,0	1/1:64:0,63:0:0:63:2238:-201.322,-18.9649,0	1/1:165:1,164:1:36:164:5803:-518.788,-46.0717,0	1/1:88:0,88:0:0:88:3101:-279.318,-26.4906,0	1/1:79:0,79:0:0:79:2785:-250.889,-23.7814,0	0/1:70:27,43:27:955:43:1519:-115.93,0,-65.1928	1/1:171:0,171:0:0:171:5995:-539.663,-51.4761,0	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:90:53,37:53:1852:37:1285:-88.8541,0,-139.864	1/1:93:0,93:0:0:93:3283:-295.691,-27.9958,0	1/1:58:1,57:1:36:57:2026:-179.013,-13.8615,0	0/1:99:44,55:44:1536:55:1946:-145.613,0,-108.727	0/1:83:56,27:56:1970:27:944:-60.2859,0,-152.588	1/1:53:0,53:0:0:53:1880:-169.478,-15.9546,0	1/1:112:0,112:0:0:112:3935:-354.3,-33.7154,0
chr04	19597315	.	C	T	22847.6	PASS	AB=0.423873;ABP=168.317;AC=42;AF=0.225806;AN=186;AO=1400;CIGAR=1X;DP=7583;DPB=7583;DPRA=1.04078;EPP=2746.67;EPPR=12122.7;GTI=4;LEN=1;MEANALT=1.02128;MQM=59.9836;MQMR=59.9835;NS=93;NUMALT=1;ODDS=0.110315;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49733;QR=220762;RO=6182;RPL=1365;RPP=2746.67;RPPR=12122.7;RPR=35;RUN=1;SAF=0;SAP=3043.07;SAR=1400;SRF=0;SRP=13427.1;SRR=6182;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:39,22:39:1388:22:773:-51.5036,0,-106.856	0/0:70:68,2:68:2421:2:72:0,-14.2354,-211.308	0/0:114:114,0:114:4026:0:0:0,-34.3174,-362.527	0/0:180:180,0:180:6449:0:0:0,-54.1854,-580.494	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:50:50,0:50:1762:0:0:0,-15.0515,-158.856	0/1:98:55,43:55:1946:43:1528:-108.312,0,-145.911	0/0:124:123,1:123:4405:1:36:0,-33.7294,-393.019	0/1:59:31,28:31:1116:28:981:-70.8403,0,-82.9909	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:149:149,0:149:5325:0:0:0,-44.8535,-479.383	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:55:32,23:32:1137:23:813:-56.9325,0,-86.0803	0/1:59:28,31:28:1008:31:1094:-81.0072,0,-73.2756	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:63:35,28:35:1241:28:1000:-71.3505,0,-93.0276	0/1:37:22,15:22:792:15:536:-37.4367,0,-60.4676	0/1:91:55,36:55:1964:36:1292:-89.19,0,-149.642	0/1:132:92,40:92:3296:40:1417:-88.0894,0,-257.123	0/1:53:15,38:15:517:38:1364:-107.106,0,-30.9	0/1:121:84,37:84:2990:37:1324:-83.0375,0,-232.902	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:83:83,0:83:2949:0:0:0,-24.9855,-265.641	0/1:143:88,55:88:3129:55:1953:-132.997,0,-238.743	0/1:195:112,83:112:4016:83:2933:-205.504,0,-302.927	0/0:43:43,0:43:1520:0:0:0,-12.9443,-137.09	0/1:139:75,64:75:2700:64:2263:-162.088,0,-201.4	0/1:114:80,34:80:2857:34:1196:-73.6266,0,-223.049	0/0:111:111,0:111:3992:0:0:0,-33.4143,-359.468	0/1:4:2,2:2:57:2:72:-5.6326,0,-4.20919	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:170:170,0:170:6028:0:0:0,-51.1751,-542.623	0/0:137:137,0:137:4874:0:0:0,-41.2411,-438.812	0/1:73:44,29:44:1580:29:1044:-72.2996,0,-120.516	.:.:.:.:.:.:.:.	0/1:69:35,34:35:1256:34:1220:-89.3357,0,-92.5742	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:122:72,50:72:2584:50:1788:-124.477,0,-196.083	0/1:71:36,35:36:1296:35:1256:-91.9722,0,-95.5708	0/0:66:65,1:65:2328:1:36:0,-16.2697,-206.181	0/1:62:34,28:34:1201:28:993:-71.0195,0,-89.7298	0/1:71:46,25:46:1644:25:885:-58.595,0,-126.875	0/1:90:60,30:60:2103:30:1038:-66.6324,0,-162.442	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:164:164,0:164:5873:0:0:0,-49.3689,-528.678	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:66:34,32:34:1220:32:1137:-82.769,0,-90.2388	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:90:51,39:51:1824:39:1396:-98.8464,0,-137.348	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:69:42,27:42:1500:27:960:-65.9452,0,-114.524	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:143:82,61:82:2936:61:2184:-153.779,0,-221.427	0/0:155:155,0:155:5525:0:0:0,-46.6596,-497.374	0/1:41:30,11:30:1076:11:377:-21.9157,0,-84.8106	0/0:99:99,0:99:3514:0:0:0,-29.802,-316.469	0/1:115:52,63:52:1841:63:2241:-167.334,0,-131.35	0/1:92:48,44:48:1724:44:1553:-112.365,0,-127.751	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	0/0:194:191,3:191:6815:3:108:0,-48.3246,-603.343	0/1:69:50,19:50:1781:19:684:-41.1193,0,-139.8	0/0:165:165,0:165:5890:0:0:0,-49.6699,-530.208	0/0:124:124,0:124:4456:0:0:0,-37.3277,-401.204	0/1:55:30,25:30:1076:25:877:-62.688,0,-80.5962	0/1:156:90,66:90:3228:66:2353:-165.067,0,-243.753	0/1:20:18,2:18:648:2:72:-0.816123,0,-52.6313	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:66:66,0:66:2338:0:0:0,-19.868,-210.676	0/0:170:169,1:169:6042:1:36:0,-47.5768,-540.282	0/0:88:88,0:88:3136:0:0:0,-26.4906,-282.467	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.722	0/1:71:44,27:44:1580:27:957:-65.0707,0,-121.118	0/0:170:170,0:170:6022:0:0:0,-51.1751,-542.084	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/1:90:37,53:37:1332:53:1881:-142.474,0,-93.0897	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:102:57,45:57:2040:45:1593:-112.953,0,-153.167	0/1:80:27,52:27:964:52:1849:-142.655,0,-63.0416	0/0:59:59,0:59:2067:0:0:0,-17.7608,-186.296	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.77
chr04	19635619	.	C	T	15139.8	PASS	AB=0.486993;ABP=5.8348;AC=42;AF=0.225806;AN=186;AO=936;CIGAR=1X;DP=4343;DPB=4343;DPRA=0.964005;EPP=2035.51;EPPR=7399.05;GTI=1;LEN=1;MEANALT=1;MQM=59.9765;MQMR=59.9874;NS=93;NUMALT=1;ODDS=1.68162;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33203;QR=121495;RO=3406;RPL=0;RPP=2035.51;RPPR=7399.05;RPR=936;RUN=1;SAF=0;SAP=2035.51;SAR=936;SRF=0;SRP=7399.05;SRR=3406;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:17,10:17:608:10:356:-24.2534,0,-46.9242	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:23:11,12:11:396:12:428:-31.9351,0,-28.4268	0/0:48:48,0:48:1695:0:0:0,-14.4494,-152.835	0/1:27:12,15:12:413:15:521:-39.0885,0,-29.37	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:104:104,0:104:3709:0:0:0,-31.3071,-334.011	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:72:72,0:72:2534:0:0:0,-21.6742,-228.31	0/1:56:28,28:28:1004:28:967:-70.4755,0,-73.8182	0/1:54:36,18:36:1280:18:648:-42.3963,0,-99.2476	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:34:26,8:26:936:8:284:-15.6683,0,-74.3244	0/1:29:15,14:15:532:14:504:-36.9682,0,-39.4832	0/1:59:38,21:38:1368:21:748:-49.8845,0,-105.66	0/1:86:47,39:47:1684:39:1376:-98.2501,0,-125.958	0/1:39:11,28:11:396:28:981:-76.8609,0,-24.2426	0/1:52:27,25:27:972:25:888:-64.5855,0,-72.1382	0/1:36:31,5:31:1112:5:168:-4.61385,0,-89.5543	0/0:32:31,0:31:1108:0:0:0,-9.33193,-99.8164	0/1:68:33,35:33:1184:35:1248:-92.1548,0,-86.3983	0/1:65:29,36:29:1036:36:1277:-95.6642,0,-73.987	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:95:44,51:44:1575:51:1812:-134.764,0,-113.443	0/1:60:34,26:34:1220:26:888:-62.1677,0,-92.045	0/0:40:40,0:40:1406:0:0:0,-12.0412,-126.829	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:12:2,10:2:72:10:356:-28.7689,0,-3.22436	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:161:161,0:161:5763:0:0:0,-48.4658,-518.785	0/0:55:55,0:55:1945:0:0:0,-16.5566,-175.324	0/1:31:17,14:17:604:14:489:-35.007,0,-45.3587	.:.:.:.:.:.:.:.	0/1:41:22,19:22:788:19:676:-48.8258,0,-58.9026	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:45:22,23:22:788:23:824:-60.937,0,-57.6984	0/1:43:24,19:24:860:19:683:-48.8558,0,-64.7775	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:18:9,9:9:309:9:312:-22.9968,0,-22.7222	0/1:40:19,21:19:680:21:752:-55.9651,0,-49.488	0/1:72:31,41:31:1112:41:1464:-110.382,0,-78.7172	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:22:11,11:11:392:11:396:-29.3601,0,-28.9974	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:79:35,44:35:1236:44:1560:-116.91,0,-87.7601	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4891	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:34:18,16:18:648:16:560:-40.4937,0,-48.4169	0/0:95:95,0:95:3372:0:0:0,-28.5978,-303.696	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:88:36,52:36:1296:52:1852:-140.469,0,-90.4533	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:28:22,6:22:788:6:216:-11.3617,0,-62.816	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:66:34,32:34:1216:32:1126:-81.7786,0,-89.8786	0/1:48:11,37:11:387:37:1332:-105.731,0,-20.7165	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:40:40,0:40:1409:0:0:0,-12.0412,-127.105	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433	0/1:35:12,23:12:432:23:816:-63.2257,0,-28.6851	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:57:24,33:24:860:33:1169:-88.3566,0,-60.5631	0/1:41:21,20:21:756:20:720:-52.7865,0,-56.025	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.786	0/0:60:60,0:60:2151:0:0:0,-18.0618,-193.857	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:42:24,18:24:852:18:644:-45.6473,0,-64.3571	0/0:122:122,0:122:4331:0:0:0,-36.7257,-389.969	0/1:30:16,14:16:576:14:500:-36.3053,0,-43.1441	0/1:71:44,27:44:1568:27:951:-64.5312,0,-120.038	0/0:95:95,0:95:3373:0:0:0,-28.5978,-303.784	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:80:49,31:49:1705:31:1108:-75.9486,0,-129.648	0/1:61:28,33:28:996:33:1175:-87.6941,0,-71.5921	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.882
chr04	19635658	.	A	G	15697.3	PASS	AB=0.489471;ABP=4.8851;AC=42;AF=0.225806;AN=186;AO=955;CIGAR=1X;DP=4380;DPB=4380;DPRA=0.989739;EPP=2076.77;EPPR=7438.13;GTI=1;LEN=1;MEANALT=1.02273;MQM=59.9623;MQMR=59.9874;NS=93;NUMALT=1;ODDS=0.376814;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34150;QR=122788;RO=3424;RPL=955;RPP=2076.77;RPPR=7438.13;RPR=0;RUN=1;SAF=0;SAP=2076.77;SAR=955;SRF=0;SRP=7438.13;SRR=3424;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:17,11:17:608:11:388:-26.8285,0,-46.6232	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:25:11,14:11:392:14:500:-37.8104,0,-27.462	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:30:14,16:14:495:16:576:-43.1441,0,-35.8521	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:45:44,1:44:1576:1:36:0,-9.94807,-138.533	0/0:103:103,0:103:3687:0:0:0,-31.0061,-332.032	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/1:56:28,28:28:1000:28:995:-72.9775,0,-73.4577	0/1:53:35,18:35:1260:18:648:-42.6973,0,-97.7509	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:34:26,8:26:932:8:288:-16.0324,0,-73.9638	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/1:59:38,21:38:1364:21:756:-50.6065,0,-105.3	0/1:88:47,41:47:1692:41:1460:-105.205,0,-126.076	0/1:39:11,28:11:396:28:1004:-78.9357,0,-24.2426	0/1:52:27,25:27:964:25:900:-65.6675,0,-71.4171	0/1:38:32,6:32:1144:6:216:-8.35137,0,-91.8304	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/1:68:33,35:33:1184:35:1260:-93.2354,0,-86.3983	0/1:64:28,36:28:1004:36:1292:-97.3178,0,-71.4099	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:98:45,53:45:1620:53:1896:-141.417,0,-116.589	0/1:59:33,26:33:1188:26:931:-66.348,0,-89.4678	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.893	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:162:162,0:162:5815:0:0:0,-48.7669,-523.46	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:32:17,15:17:612:15:531:-38.4842,0,-45.7805	.:.:.:.:.:.:.:.	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9624	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:45:21,24:21:756:24:864:-64.5362,0,-54.8209	0/1:47:28,19:28:991:19:684:-47.7419,0,-75.3551	0/0:69:68,1:68:2440:1:36:0,-17.1728,-216.257	0/1:19:9,10:9:320:10:343:-25.481,0,-23.4228	0/1:41:19,22:19:676:22:775:-57.729,0,-48.8258	0/1:74:32,42:32:1143:42:1508:-113.738,0,-80.9025	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:79:35,44:35:1256:44:1572:-117.99,0,-89.5639	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:6,1:6:201:1:36:-1.49107,0,-16.3098	0/1:36:18,18:18:648:18:648:-47.8148,0,-47.8148	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:86:35,51:35:1260:51:1836:-139.632,0,-87.8169	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:28:21,7:21:752:7:252:-14.6001,0,-59.5774	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:63:33,30:33:1180:30:1072:-77.8276,0,-87.5432	0/1:48:11,37:11:396:37:1324:-105.01,0,-21.5333	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/1:15:8,7:8:284:7:248:-18.1487,0,-21.3879	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:37:12,25:12:428:25:892:-69.4616,0,-27.7207	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:60:25,35:25:900:35:1247:-94.4723,0,-63.2592	0/1:40:20,20:20:720:20:720:-53.0876,0,-53.0876	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:52:52,0:52:1857:0:0:0,-15.6536,-167.408	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:42:24,18:24:864:18:640:-45.2861,0,-65.4393	0/0:121:121,0:121:4343:0:0:0,-36.4246,-391.043	0/1:31:17,14:17:604:14:504:-36.3662,0,-45.3587	0/1:71:45,26:45:1620:26:909:-60.75,0,-124.717	0/0:96:96,0:96:3447:0:0:0,-28.8989,-310.441	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:83:51,32:51:1836:32:1144:-78.284,0,-140.535	0/1:61:28,32:28:995:32:1135:-84.1819,0,-71.5872	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:83:83,0:83:2979:0:0:0,-24.9855,-268.341
chr04	19722976	.	C	G	261671	PASS	AB=0.50972;ABP=7.4429;AC=145;AF=0.771277;AN=188;AO=9718;CIGAR=1X;DP=12395;DPB=12395;DPRA=0;EPP=21079.3;EPPR=5759.64;GTI=0;LEN=1;MEANALT=1.10638;MQM=59.9388;MQMR=59.9843;NS=94;NUMALT=1;ODDS=10.5966;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=344612;QR=95054;RO=2667;RPL=3855;RPP=903.969;RPPR=194.531;RPR=5863;RUN=1;SAF=3858;SAP=898.593;SAR=5860;SRF=1095;SRP=188.264;SRR=1572;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:33,19:33:1166:19:680:-45.8756,0,-89.592	1/1:204:1,203:1:36:203:7181:-642.697,-57.8118,0	1/1:222:0,222:0:0:222:7903:-711.299,-66.8287,0	1/1:207:4,202:4:144:202:7143:-629.588,-49.0584,0	1/1:81:4,77:4:129:77:2749:-235.723,-12.4558,0	1/1:106:0,106:0:0:106:3779:-340.297,-31.9092,0	0/1:193:102,91:102:3652:91:3251:-234.626,0,-270.785	1/1:172:0,172:0:0:172:6098:-548.915,-51.7772,0	0/1:145:49,96:49:1745:96:3410:-263.465,0,-113.683	1/1:84:0,83:0:0:83:2924:-263.032,-24.9855,0	1/1:173:0,173:0:0:173:6112:-550.186,-52.0782,0	1/1:209:1,208:1:36:208:7265:-650.317,-59.317,0	1/1:189:0,189:0:0:189:6729:-605.602,-56.8947,0	1/1:234:0,234:0:0:234:8314:-748.266,-70.441,0	0/1:117:55,62:55:1968:62:2175:-160.77,0,-142.175	0/1:136:67,69:67:2359:69:2457:-180.443,0,-171.627	1/1:206:0,204:0:0:204:7240:-651.338,-61.4101,0	0/1:113:51,62:51:1812:62:2179:-162.36,0,-129.342	0/1:89:50,39:50:1774:39:1374:-97.1661,0,-133.15	0/1:206:103,103:103:3692:103:3674:-268.846,0,-270.47	0/1:180:89,91:89:3158:91:3203:-234.307,0,-230.234	0/1:52:32,20:32:1144:20:720:-49.4752,0,-87.616	0/1:87:36,51:36:1296:51:1817:-137.603,0,-90.7543	1/1:77:6,71:6:207:71:2491:-205.473,-4.21242,0	1/1:99:0,99:0:0:99:3508:-315.88,-29.802,0	0/1:241:117,124:117:4180:124:4398:-323.445,0,-303.832	0/1:290:137,153:137:4849:153:5424:-400.938,0,-349.264	1/1:79:0,79:0:0:79:2821:-254.128,-23.7814,0	0/1:282:125,156:125:4452:156:5518:-411.802,0,-315.901	0/1:107:53,54:53:1888:54:1927:-141.496,0,-137.988	1/1:120:0,120:0:0:120:4279:-385.287,-36.1236,0	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:28:15,13:15:536:13:453:-32.6708,0,-40.146	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:11:0,11:0:0:11:385:-34.9385,-3.31133,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:333:0,333:0:0:333:11796:-1061.51,-100.243,0	1/1:117:0,117:0:0:117:4117:-370.659,-35.2205,0	0/1:148:74,74:74:2640:74:2635:-192.845,0,-193.295	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:161:72,89:72:2542:89:3166:-236.699,0,-180.563	1/1:88:0,88:0:0:88:3091:-278.416,-26.4906,0	0/1:145:79,66:79:2825:66:2332:-166.461,0,-210.838	0/1:136:74,62:74:2634:62:2188:-156.244,0,-196.366	1/1:133:0,133:0:0:133:4690:-422.242,-40.037,0	0/1:91:42,49:42:1508:49:1756:-130.93,0,-108.621	0/1:121:61,60:61:2196:60:2128:-155.35,0,-161.48	0/1:205:101,104:101:3608:104:3698:-271.312,0,-263.216	1/1:95:0,95:0:0:95:3391:-305.403,-28.5979,0	1/1:167:0,167:0:0:167:5902:-531.286,-50.272,0	1/1:123:0,123:0:0:123:4371:-393.336,-37.0267,0	1/1:6:0,6:0:0:6:205:-18.7836,-1.80618,0	1/1:151:0,151:0:0:151:5358:-482.353,-45.4555,0	0/1:55:29,25:29:1040:25:892:-63.9844,0,-77.299	1/1:27:0,27:0:0:27:936:-84.5503,-8.12781,0	0/1:125:49,76:49:1760:76:2707:-206.189,0,-121.055	1/1:42:0,42:0:0:42:1490:-134.393,-12.6433,0	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/1:133:62,71:62:2224:71:2531:-188.004,0,-160.387	1/1:222:1,221:1:36:221:7849:-702.844,-63.2304,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:105:49,56:49:1739:56:1995:-148.215,0,-125.186	1/1:215:1,214:1:36:214:7617:-681.97,-61.1232,0	0/1:105:40,65:40:1440:65:2314:-176.911,0,-98.2896	1/1:89:0,89:0:0:89:3159:-284.533,-26.7917,0	0/1:161:75,86:75:2671:86:3048:-226.079,0,-192.17	0/1:122:75,47:75:2667:47:1684:-115.121,0,-203.55	1/1:104:1,103:1:36:103:3675:-327.354,-27.7088,0	1/1:114:0,114:0:0:114:4030:-362.889,-34.3174,0	1/1:177:0,176:0:0:176:6188:-556.774,-52.9813,0	0/1:40:14,26:14:504:26:926:-71.6169,0,-33.6569	1/1:111:0,110:0:0:110:3890:-349.936,-33.1133,0	0/1:116:53,63:53:1904:63:2228:-165.863,0,-136.718	1/1:283:1,282:1:36:282:9992:-895.613,-81.5932,0	1/1:158:1,157:1:36:157:5574:-498.19,-43.9645,0	0/1:142:73,69:73:2620:69:2453:-178.277,0,-193.301	0/1:153:75,78:75:2692:78:2764:-202.946,0,-196.467	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	1/1:132:0,132:0:0:132:4707:-423.788,-39.736,0	1/1:107:0,107:0:0:107:3775:-339.948,-32.2102,0	1/1:215:0,214:0:0:214:7576:-681.405,-64.4204,0	1/1:186:0,186:0:0:186:6622:-596.06,-55.9916,0	1/1:140:0,140:0:0:140:4978:-448.169,-42.1442,0	0/1:144:67,77:67:2400:77:2739:-203.177,0,-172.909	1/1:258:1,257:1:36:257:9130:-818.082,-74.0675,0	0/1:69:33,35:33:1184:35:1247:-91.7043,0,-86.0385	0/1:126:73,53:73:2572:53:1865:-130.197,0,-193.799	1/1:161:0,161:0:0:161:5744:-517.067,-48.4658,0	1/1:139:0,139:0:0:139:4880:-439.334,-41.8432,0	0/1:250:126,124:126:4444:124:4417:-322.436,0,-324.875	0/1:166:104,62:104:3689:62:2183:-146.763,0,-282.24	1/1:150:0,150:0:0:150:5336:-480.358,-45.1545,0	1/1:242:0,242:0:0:242:8594:-773.462,-72.8493,0
chr04	19878281	.	G	A	16372.8	PASS	AB=0.59198;ABP=118.455;AC=46;AF=0.244681;AN=188;AO=941;CIGAR=1X;DP=2720;DPB=2720;DPRA=1.55804;EPP=2020.39;EPPR=3846.54;GTI=6;LEN=1;MEANALT=1.02174;MQM=59.9277;MQMR=59.9871;NS=94;NUMALT=1;ODDS=0.287298;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33698;QR=63195;RO=1778;RPL=3;RPP=2020.39;RPPR=3846.54;RPR=938;RUN=1;SAF=941;SAP=2046.37;SAR=0;SRF=1778;SRP=3863.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.2486	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/1:22:19,3:19:676:3:100:-2.70778,0,-54.5453	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9198	0/1:52:19,33:19:675:33:1176:-90.4942,0,-45.4234	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:25:11,14:11:384:14:504:-38.1714,0,-27.3689	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8032	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/1:27:7,20:7:243:20:716:-56.6399,0,-14.0797	0/1:20:11,9:11:388:9:320:-23.1218,0,-29.2368	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:21:5,16:5:180:16:572:-45.4918,0,-10.2304	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:36:4,32:4:144:32:1130:-91.1661,0,-2.47654	0/1:27:9,18:9:311:18:644:-50.1628,0,-20.1959	0/1:70:20,50:20:720:50:1787:-140.04,0,-44.0567	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/0:34:32,2:32:1135:2:72:0,-3.3983,-95.6213	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:95:38,56:38:1347:56:2012:-152.696,0,-92.873	0/1:47:24,23:24:840:23:828:-60.6957,0,-61.7698	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:140:55,85:55:1959:85:3039:-231.595,0,-134.441	0/1:79:28,51:28:987:51:1828:-141.02,0,-65.3617	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/0:16:15,1:15:532:1:36:0,-1.2182,-44.6148	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1846	0/0:49:49,0:49:1726:0:0:0,-14.7505,-155.623	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:56:19,37:19:684:37:1328:-102.965,0,-45.0326	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:45:26,19:26:932:19:684:-48.344,0,-70.6525	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:29:8,21:8:284:21:741:-58.2817,0,-17.1735	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:73:24,49:24:847:49:1760:-136.709,0,-54.5735	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:27:27,0:27:944:0:0:0,-8.12781,-85.2741	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:37:21,16:21:748:16:570:-40.4943,0,-56.5072	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:30:6,24:6:216:24:864:-69.0517,0,-10.7596	0/0:30:30,0:30:1053:0:0:0,-9.0309,-95.0783	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:123:59,64:59:2100:64:2296:-169.874,0,-152.243	0/1:41:37,4:37:1324:4:136:-0.232731,0,-107.12	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:38:17,21:17:604:21:752:-56.5648,0,-43.2515	0/1:20:7,13:7:252:13:464:-36.0769,0,-17.0084	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.48	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:40:10,30:10:347:30:1072:-84.7513,0,-19.5224	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:23:12,11:12:423:11:396:-29.0591,0,-31.4814	0/1:46:8,38:8:288:38:1368:-109.573,0,-12.42	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:35:35,0:35:1236:0:0:0,-10.536,-111.544	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:16:16,0:16:550:0:0:0,-4.81648,-49.8234	0/1:35:15,20:15:532:20:720:-54.5927,0,-37.677	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:23:9,14:9:320:14:504:-38.1435,0,-22.2187	0/1:42:15,27:15:527:27:972:-75.144,0,-35.1169	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:49:26,23:26:919:23:819:-59.2793,0,-68.2757	0/1:32:12,20:12:432:20:720:-55.4958,0,-29.5882	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158
chr04	19878405	.	C	T	86527	PASS	AB=0.421548;ABP=105.224;AC=147;AF=0.781915;AN=188;AO=3474;CIGAR=1X;DP=4620;DPB=4620;DPRA=0;EPP=2962.67;EPPR=2476.32;GTI=5;LEN=1;MEANALT=1.03191;MQM=48.3279;MQMR=59.9344;NS=94;NUMALT=1;ODDS=0.327838;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123826;QR=40708;RO=1143;RPL=2826;RPP=2968.12;RPPR=2476.32;RPR=648;RUN=1;SAF=1;SAP=7538.02;SAR=3473;SRF=0;SRP=2485;SRR=1143;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:10,2:10:360:2:68:-2.82175,0,-29.1319	1/1:23:0,23:0:0:23:824:-73.8505,-6.92369,0	1/1:31:0,31:0:0:31:1108:-99.2078,-9.33193,0	1/1:29:0,29:0:0:29:1044:-92.6684,-8.72987,0	1/1:13:0,13:0:0:13:453:-40.7025,-3.91339,0	1/1:16:0,16:0:0:16:576:-51.6134,-4.81648,0	0/1:28:21,7:21:744:7:248:-13.9436,0,-58.8546	1/1:22:0,21:0:0:21:756:-66.8782,-6.32163,0	0/1:48:26,22:26:928:22:788:-56.1621,0,-69.3888	1/1:12:1,11:1:36:11:392:-31.8627,-0.0140851,0	1/1:37:0,37:0:0:37:1301:-115.071,-11.1381,0	1/1:17:0,17:0:0:17:608:-54.2108,-5.11751,0	1/1:17:0,17:0:0:17:599:-54.0952,-5.11751,0	1/1:14:0,14:0:0:14:496:-44.479,-4.21442,0	0/1:32:23,9:23:824:9:320:-18.7686,0,-64.8357	0/1:30:18,12:18:631:12:432:-29.3722,0,-48.0848	1/1:6:0,6:0:0:6:212:-19.3383,-1.80618,0	0/1:11:6,5:6:212:5:180:-13.1828,0,-16.1135	0/1:25:10,15:10:347:15:525:-39.7661,0,-24.0379	0/1:33:24,9:24:864:9:324:-19.2998,0,-68.1486	0/1:79:61,18:61:2179:18:644:-34.1507,0,-172.594	0/1:42:37,5:37:1306:5:180:-3.82197,0,-105.197	0/1:37:29,8:29:1029:8:288:-14.6169,0,-81.783	1/1:12:0,12:0:0:12:423:-37.9236,-3.61236,0	1/1:9:0,9:0:0:9:324:-29.2168,-2.70927,0	0/1:68:45,23:45:1620:23:824:-53.5749,0,-125.62	0/1:119:81,38:81:2881:38:1344:-84.6304,0,-223.703	1/1:2:0,2:0:0:2:72:-6.79905,-0.60206,0	0/1:95:70,25:70:2500:25:873:-49.3481,0,-196.655	0/1:47:32,15:32:1140:15:532:-33.6502,0,-88.7608	1/1:27:0,27:0:0:27:968:-86.5321,-8.12781,0	1/1:142:5,137:5:176:137:4897:-418.021,-26.5612,0	0/1:95:11,84:11:396:84:3012:-235.781,0,-7.3849	1/1:157:0,157:0:0:157:5640:-502.207,-47.2617,0	1/1:319:0,319:0:0:319:11313:-1009.74,-96.0286,0	1/1:261:0,261:0:0:261:9322:-828.515,-78.5688,0	1/1:35:0,35:0:0:35:1252:-112.559,-10.5361,0	1/1:21:0,21:0:0:21:733:-65.9549,-6.32163,0	0/1:41:13,28:13:464:28:999:-77.0949,0,-29.7553	1/1:41:0,41:0:0:41:1476:-131.919,-12.3422,0	0/1:34:25,9:25:892:9:320:-17.6849,0,-70.3647	1/1:27:0,27:0:0:27:964:-86.2222,-8.12781,0	0/1:29:20,9:20:720:9:316:-19.8174,0,-56.3989	0/1:14:7,7:7:252:7:252:-18.6182,0,-18.8145	1/1:6:0,6:0:0:6:216:-19.6081,-1.80618,0	0/1:26:15,11:15:523:11:377:-26.1522,0,-39.4841	0/1:35:18,17:18:644:17:611:-44.4386,0,-47.7545	0/1:55:41,14:41:1472:14:492:-27.6661,0,-116.219	1/1:11:0,11:0:0:11:396:-35.6209,-3.31133,0	1/1:25:0,25:0:0:25:896:-79.7582,-7.52575,0	1/1:23:0,23:0:0:23:808:-72.652,-6.92369,0	1/1:169:0,169:0:0:169:6029:-534.427,-50.8741,0	1/1:55:0,54:0:0:54:1910:-169.62,-16.2556,0	0/1:17:13,4:13:464:4:144:-8.0797,0,-36.98	1/1:142:0,142:0:0:142:5060:-450.287,-42.7463,0	0/1:55:45,10:45:1608:10:360:-16.0072,0,-128.453	1/1:1:0,1:0:0:1:36:-3.54852,-0.30103,0	1/1:91:5,86:5:180:86:3031:-253.617,-10.8417,0	1/1:112:8,104:8:288:104:3708:-304.877,-7.44795,0	0/1:33:19,14:19:680:14:504:-35.3324,0,-51.5952	1/1:22:0,22:0:0:22:788:-70.4782,-6.62266,0	1/1:95:0,95:0:0:95:3384:-299.284,-28.5979,0	0/1:67:45,22:45:1595:22:775:-49.8704,0,-123.671	0/1:40:4,36:4:144:36:1279:-102.01,0,-1.27242	0/1:27:20,7:20:720:7:229:-12.6629,0,-57.001	1/1:15:0,15:0:0:15:536:-48.105,-4.51545,0	0/1:51:32,19:32:1148:19:676:-45.32,0,-88.2691	0/1:108:78,30:78:2772:30:1076:-63.9231,0,-217.181	1/1:63:0,63:0:0:63:2264:-202.045,-18.9649,0	1/1:6:0,6:0:0:6:212:-19.2688,-1.80618,0	1/1:19:0,19:0:0:19:684:-61.7479,-5.71957,0	0/1:84:15,68:15:513:68:2402:-187.337,0,-21.1533	1/1:30:0,30:0:0:30:1064:-95.4899,-9.0309,0	0/1:31:20,11:20:695:11:392:-26.0593,0,-53.5394	1/1:43:0,43:0:0:43:1524:-135.147,-12.9443,0	1/1:38:0,38:0:0:38:1364:-121.726,-11.4391,0	0/1:42:15,27:15:540:27:952:-72.9591,0,-36.2933	0/1:37:25,12:25:878:12:428:-27.1089,0,-68.1978	1/1:191:6,185:6:216:185:6614:-567.558,-37.7062,0	1/1:14:0,14:0:0:14:504:-45.2304,-4.21442,0	1/1:21:0,21:0:0:21:756:-67.9687,-6.32163,0	1/1:24:0,24:0:0:24:860:-76.9026,-7.22472,0	1/1:6:0,6:0:0:6:216:-19.5624,-1.80618,0	1/1:23:0,23:0:0:23:816:-72.7843,-6.92369,0	0/0:13:12,1:12:423:1:36:0,-0.858852,-35.3505	1/1:25:1,24:1:32:24:855:-72.8257,-4.32644,0	0/1:8:7,1:7:248:1:36:-1.15857,0,-20.256	0/1:39:30,9:30:1068:9:320:-17.2819,0,-84.6919	1/1:12:0,12:0:0:12:428:-38.6471,-3.61236,0	1/1:101:0,101:0:0:101:3620:-322.137,-30.404,0	0/1:199:63,136:63:2248:136:4864:-373.238,0,-142.668	0/1:39:31,8:31:1108:8:288:-14.1955,0,-88.2908	1/1:10:0,10:0:0:10:352:-31.988,-3.0103,0	1/1:12:0,12:0:0:12:432:-38.9048,-3.61236,0
chr04	19950881	.	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chr04	19950898	.	T	C	178048	PASS	AB=0.566995;ABP=106.008;AC=146;AF=0.776596;AN=188;AO=6182;CIGAR=1X;DP=7337;DPB=7337;DPRA=78.8817;EPP=3232.13;EPPR=2508.89;GTI=5;LEN=1;MEANALT=1.01075;MQM=59.7051;MQMR=59.9922;NS=94;NUMALT=1;ODDS=0.457603;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=216653;QR=41008;RO=1154;RPL=4842;RPP=4310.83;RPPR=2508.89;RPR=1340;RUN=1;SAF=3267;SAP=46.5325;SAR=2915;SRF=1154;SRP=2508.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:5,18:5:176:18:623:-49.4694,0,-9.26133	1/1:138:1,137:1:36:137:4764:-425.296,-37.9439,0	1/1:133:0,133:0:0:133:4707:-423.736,-40.037,0	1/1:96:0,96:0:0:96:3377:-304.143,-28.8989,0	1/1:70:0,70:0:0:70:2500:-225.231,-21.0721,0	1/1:41:0,41:0:0:41:1447:-130.515,-12.3422,0	0/1:51:16,35:16:576:35:1252:-97.6275,0,-36.8225	1/1:103:0,103:0:0:103:3661:-329.64,-31.0061,0	0/1:53:12,41:12:424:41:1453:-115.101,0,-22.5418	1/1:74:0,74:0:0:74:2612:-235.325,-22.2762,0	1/1:107:0,107:0:0:107:3707:-333.83,-32.2102,0	1/1:87:0,87:0:0:87:3036:-273.455,-26.1896,0	1/1:99:0,99:0:0:99:3435:-309.341,-29.802,0	1/1:130:0,130:0:0:130:4522:-407.126,-39.1339,0	0/1:62:13,49:13:460:49:1700:-134.245,0,-23.0715	0/1:70:21,49:21:725:49:1682:-130.09,0,-44.4954	1/1:110:0,110:0:0:110:3873:-348.752,-33.1133,0	0/1:49:7,42:7:252:42:1485:-119.105,0,-8.27849	0/1:51:9,42:9:324:42:1466:-116.801,0,-14.1533	0/1:127:61,66:61:2184:66:2334:-172.083,0,-158.595	0/1:76:18,58:18:644:58:2063:-163.053,0,-35.4123	0/1:56:41,15:41:1452:15:521:-30.3601,0,-114.118	0/1:74:55,19:55:1925:19:661:-37.533,0,-151.246	1/1:107:3,104:3:108:104:3686:-321.855,-22.135,0	1/1:93:0,93:0:0:93:3293:-296.576,-27.9958,0	0/1:164:90,74:90:3196:74:2574:-182.537,0,-238.496	0/1:94:38,56:38:1368:56:1991:-151.157,0,-95.124	1/1:71:0,71:0:0:71:2517:-226.768,-21.3731,0	0/1:111:55,56:55:1952:56:1984:-145.419,0,-142.539	0/1:60:41,19:41:1464:19:671:-42.654,0,-113.994	1/1:70:0,70:0:0:70:2470:-222.549,-21.0721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:3,8:3:104:8:284:-22.5887,0,-6.39148	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:9:0,9:0:0:9:287:-26.1403,-2.70927,0	1/1:260:0,260:0:0:260:9035:-812.097,-78.2678,0	1/1:85:0,85:0:0:85:2967:-267.197,-25.5876,0	0/1:62:13,49:13:455:49:1716:-136.041,0,-22.6181	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:76:44,32:44:1550:32:1116:-77.8168,0,-116.912	1/1:81:0,81:0:0:81:2796:-251.877,-24.3834,0	0/1:75:18,56:18:639:56:1974:-155.435,0,-35.3444	0/1:74:14,60:14:500:60:2121:-168.881,0,-23.06	1/1:89:0,89:0:0:89:3088:-278.145,-26.7917,0	0/1:55:27,28:27:950:28:969:-70.9593,0,-69.2568	0/1:97:38,59:38:1355:59:2064:-156.735,0,-93.0498	0/1:83:43,40:43:1518:40:1436:-104.552,0,-111.92	1/1:71:1,70:1:36:70:2432:-215.525,-17.7749,0	1/1:102:0,102:0:0:102:3601:-324.271,-30.7051,0	1/1:130:0,130:0:0:130:4638:-417.553,-39.1339,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:119:0,119:0:0:119:4191:-377.299,-35.8226,0	0/1:39:27,12:27:968:12:413:-24.8951,0,-75.6972	1/1:5:0,5:0:0:5:165:-15.1724,-1.50515,0	0/1:104:63,41:63:2252:41:1437:-98.2709,0,-171.636	1/1:34:0,34:0:0:34:1220:-110.102,-10.235,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:6:5,1:5:180:1:21:-0.293766,0,-14.7459	0/1:54:24,30:24:843:30:1046:-78.1402,0,-59.9324	1/1:154:0,154:0:0:154:5323:-479.206,-46.3586,0	1/1:2:0,2:0:0:2:59:-5.60414,-0.60206,0	0/1:77:39,38:39:1395:38:1323:-96.1867,0,-102.669	1/1:134:2,132:2:72:132:4592:-406.386,-33.5013,0	0/1:62:25,37:25:879:37:1324:-100.798,0,-60.7629	1/1:47:0,47:0:0:47:1675:-151.034,-14.1484,0	0/1:77:21,56:21:752:56:1958:-153.31,0,-44.8269	0/1:101:79,22:79:2836:22:768:-39.0332,0,-225.074	1/1:58:0,58:0:0:58:2060:-185.672,-17.4597,0	1/1:53:0,53:0:0:53:1871:-168.668,-15.9546,0	1/1:148:0,148:0:0:148:5153:-463.905,-44.5524,0	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	1/1:37:0,37:0:0:37:1274:-114.918,-11.1381,0	0/1:62:32,30:32:1144:30:1068:-77.7597,0,-84.6057	1/1:81:0,81:0:0:81:2847:-256.445,-24.3834,0	1/1:101:0,101:0:0:101:3572:-321.666,-30.404,0	0/1:59:21,38:21:748:38:1319:-101.08,0,-49.8845	0/1:71:34,37:34:1220:37:1317:-97.4529,0,-88.7337	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:119:0,119:0:0:119:4189:-377.193,-35.8226,0	1/1:75:0,75:0:0:75:2628:-236.565,-22.5773,0	1/1:179:0,179:0:0:179:6316:-568.471,-53.8844,0	1/1:161:0,161:0:0:161:5630:-506.82,-48.4658,0	1/1:107:0,107:0:0:107:3750:-337.693,-32.2102,0	1/1:85:3,82:3:104:82:2856:-247.483,-15.8847,0	1/1:201:0,201:0:0:201:7005:-630.434,-60.507,0	0/1:43:10,33:10:347:33:1166:-92.2931,0,-18.6193	0/1:68:13,55:13:468:55:1870:-148.099,0,-21.9896	1/1:96:0,96:0:0:96:3364:-302.758,-28.8989,0	1/1:57:0,57:0:0:57:2007:-180.903,-17.1587,0	0/1:89:40,49:40:1396:49:1680:-124.668,0,-99.1426	0/1:58:17,41:17:599:41:1449:-113.199,0,-36.7784	1/1:76:0,76:0:0:76:2628:-236.762,-22.8783,0	1/1:184:0,184:0:0:184:6399:-576.003,-55.3895,0
chr04	20353649	.	G	T	100349	PASS	AB=0.510272;ABP=11.0399;AC=45;AF=0.239362;AN=188;AO=4494;CIGAR=1X;DP=18611;DPB=18611;DPRA=1.08567;EPP=9752.92;EPPR=30616.4;GTI=0;LEN=1;MEANALT=1.03636;MQM=59.9662;MQMR=59.9975;NS=94;NUMALT=1;ODDS=5.45584;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157870;QR=500432;RO=14114;RPL=1860;RPP=292.48;RPPR=763.991;RPR=2634;RUN=1;SAF=1859;SAP=293.978;SAR=2635;SRF=5943;SRP=766.731;SRR=8171;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:89:33,56:33:1175:56:1958:-149.7,0,-79.2653	0/0:304:304,0:304:10730:0:0:0,-91.5131,-965.616	0/0:324:324,0:324:11538:0:0:0,-97.5337,-1038.3	0/0:372:371,1:371:13093:1:36:0,-108.385,-1174.59	0/0:148:146,2:146:5167:2:72:0,-37.7157,-458.338	0/0:105:104,1:104:3703:1:21:0,-29.5082,-331.373	0/1:308:166,142:166:5885:142:4993:-356.81,0,-437.046	0/0:323:323,0:323:11400:0:0:0,-97.2327,-1025.86	0/1:214:116,98:116:4156:98:3446:-245.905,0,-309.802	0/0:230:229,1:229:8064:1:21:0,-67.137,-723.682	0/0:127:127,0:127:4536:0:0:0,-38.2308,-408.408	0/0:183:183,0:183:6470:0:0:0,-55.0885,-582.39	0/0:176:175,1:175:6194:1:32:0,-49.782,-554.363	0/0:190:190,0:190:6681:0:0:0,-57.1957,-601.373	0/1:149:75,74:75:2670:74:2628:-191.915,0,-195.691	0/1:128:68,60:68:2401:60:2114:-151.996,0,-177.814	0/0:137:137,0:137:4876:0:0:0,-41.2411,-438.993	0/1:141:70,71:70:2469:71:2498:-182.627,0,-180.018	0/1:90:31,59:31:1103:59:2076:-159.979,0,-72.4871	0/1:385:172,213:172:6115:213:7530:-561.824,0,-434.554	0/1:325:149,176:149:5288:176:6146:-455.417,0,-378.223	0/1:102:40,62:40:1417:62:2160:-163.961,0,-97.1203	0/1:217:116,101:116:4121:101:3572:-256.368,0,-305.752	0/0:267:257,10:257:9113:10:351:0,-48.4483,-788.223	0/0:217:217,0:217:7749:0:0:0,-65.3235,-697.442	0/1:493:239,254:239:8516:254:8901:-652.689,0,-618.032	0/1:436:246,190:246:8775:190:6670:-469.146,0,-658.491	0/0:84:84,0:84:2994:0:0:0,-25.2865,-269.691	0/1:504:258,246:258:9140:246:8674:-628.948,0,-670.858	0/1:277:159,118:159:5637:118:4146:-289.944,0,-424.068	0/0:265:265,0:265:9436:0:0:0,-79.7729,-849.198	0/1:14:3,11:3:104:11:388:-31.0429,0,-5.48839	0/1:29:18,11:18:639:11:388:-26.5275,0,-49.1084	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:32:8,24:8:261:24:844:-66.646,0,-14.1751	0/0:381:381,0:381:13520:0:0:0,-114.692,-1216.6	0/0:218:218,0:218:7619:0:0:0,-65.6245,-685.757	0/1:128:53,75:53:1880:75:2644:-199.608,0,-130.947	0/1:17:8,9:8:269:9:303:-22.4792,0,-19.4186	0/1:360:187,173:187:6599:173:6076:-438.579,0,-485.624	0/0:84:84,0:84:2972:0:0:0,-25.2865,-267.713	0/1:271:114,157:114:4067:157:5543:-417.425,0,-284.638	0/1:202:103,99:103:3621:99:3485:-253.056,0,-265.286	0/0:156:156,0:156:5565:0:0:0,-46.9607,-500.972	0/1:168:88,80:88:3135:80:2811:-202.658,0,-231.803	0/1:233:96,137:96:3416:137:4799:-361.936,0,-237.513	0/1:254:127,126:127:4483:126:4422:-321.638,0,-327.12	0/0:197:197,0:197:6997:0:0:0,-59.3029,-629.796	0/0:236:236,0:236:8389:0:0:0,-71.0431,-755.016	0/0:289:289,0:289:10294:0:0:0,-86.9977,-926.386	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:280:280,0:280:9968:0:0:0,-84.2884,-897.062	0/1:66:32,34:32:1133:34:1194:-87.8966,0,-82.4087	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/1:283:131,152:131:4639:152:5263:-388.63,0,-332.483	0/0:225:225,0:225:7982:0:0:0,-67.7317,-718.408	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:24:13,11:13:468:11:384:-27.67,0,-35.2349	0/1:130:76,54:76:2680:54:1887:-130.971,0,-202.311	0/0:235:234,1:234:8331:1:36:0,-67.1438,-746.203	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:233:123,110:123:4378:110:3882:-279.439,0,-324.055	0/0:348:344,4:344:12177:4:144:0,-91.4448,-1082.47	0/1:199:114,85:114:4035:85:2971:-207.718,0,-303.432	0/0:185:185,0:185:6545:0:0:0,-55.6905,-589.138	0/1:497:223,273:223:7901:273:9660:-719.843,0,-561.601	0/1:240:76,164:76:2690:164:5752:-445.56,0,-170.095	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.545	0/0:224:224,0:224:7940:0:0:0,-67.4307,-714.627	0/0:197:197,0:197:7010:0:0:0,-59.3029,-630.965	0/1:27:11,16:11:392:16:561:-42.6893,0,-27.4922	0/0:160:159,1:159:5650:1:36:0,-44.5665,-505.023	0/1:192:113,79:113:3994:79:2820:-196.242,0,-301.851	0/0:354:354,0:354:12540:0:0:0,-106.565,-1128.44	0/0:295:295,0:295:10534:0:0:0,-88.8038,-947.975	0/1:221:105,116:105:3697:116:4058:-298.883,0,-266.406	0/1:234:111,123:111:3933:123:4283:-315.216,0,-283.721	0/1:14:7,7:7:248:7:244:-18.085,0,-18.4498	0/0:292:291,0:291:10340:0:0:0,-87.5997,-930.169	0/0:227:227,0:227:8040:0:0:0,-68.3338,-723.624	0/0:455:454,1:454:16107:1:36:0,-133.37,-1445.73	0/0:166:166,0:166:5882:0:0:0,-49.971,-529.493	0/1:156:92,64:92:3268:64:2250:-155.802,0,-247.382	0/1:186:98,88:98:3431:88:3098:-223.059,0,-253.015	0/0:269:269,0:269:9552:0:0:0,-80.9771,-859.64	0/1:81:48,33:48:1696:33:1160:-80.3223,0,-128.54	0/1:120:53,67:53:1860:67:2359:-176.446,0,-131.553	0/0:163:163,0:163:5776:0:0:0,-49.0679,-519.957	0/0:126:126,0:126:4450:0:0:0,-37.9298,-400.67	0/1:148:67,81:67:2382:81:2822:-209.671,0,-170.084	0/1:145:53,92:53:1883:92:3222:-246.555,0,-126.099	0/0:257:257,0:257:9083:0:0:0,-77.3647,-817.455	0/0:235:235,0:235:8305:0:0:0,-70.742,-747.467
chr04	20554171	.	A	G	2744.94	PASS	AB=0.187859;ABP=2651.87;AC=35;AF=0.188172;AN=186;AO=660;CIGAR=1X;DP=11630;DPB=11630;DPRA=0.8394;EPP=1436.18;EPPR=22929.3;GTI=21;LEN=1;MEANALT=1;MQM=59.7848;MQMR=59.9943;NS=93;NUMALT=1;ODDS=2.78491;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23531;QR=392522;RO=10970;RPL=658;RPP=1418.86;RPPR=48.2379;RPR=2;RUN=1;SAF=658;SAP=1418.86;SAR=2;SRF=5634;SRP=20.5887;SRR=5336;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:57,3:57:2052:3:104:0,-8.35899,-175.249	0/0:164:164,0:164:5856:0:0:0,-49.3689,-527.151	0/0:375:374,1:374:13408:1:36:0,-109.288,-1202.9	0/0:445:445,0:445:15918:0:0:0,-133.958,-1432.31	0/0:95:94,1:94:3376:1:36:0,-24.9996,-300.457	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.747	0/1:111:87,24:87:3128:24:860:-44.3005,0,-248.331	0/0:205:202,3:202:7212:3:108:0,-51.636,-639.057	0/0:84:78,6:78:2774:6:216:0,-5.49693,-230.111	0/0:258:258,0:258:9202:0:0:0,-77.6657,-828.155	0/0:111:111,0:111:3934:0:0:0,-33.4143,-354.255	0/0:154:154,0:154:5480:0:0:0,-46.3586,-493.329	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/0:122:122,0:122:4352:0:0:0,-36.7257,-391.856	0/1:60:48,12:48:1724:12:424:-20.4346,0,-137.384	0/1:41:37,4:37:1332:4:144:-0.969806,0,-107.84	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/1:38:29,9:29:1040:9:320:-17.7032,0,-82.4752	0/1:34:28,6:28:1008:6:216:-9.55549,0,-80.8013	0/1:146:131,15:131:4680:15:532:-4.26036,0,-377.409	0/0:140:129,11:129:4628:11:392:0,-6.52414,-381.062	0/1:66:40,26:40:1440:26:914:-62.7033,0,-110.03	0/1:93:80,13:80:2876:13:468:-14.4639,0,-231.08	0/0:112:112,0:112:4028:0:0:0,-33.7154,-362.707	0/0:159:159,0:159:5694:0:0:0,-47.8638,-512.577	0/1:276:238,38:238:8542:38:1359:-39.4161,0,-685.69	0/1:208:179,29:179:6424:29:1036:-30.9397,0,-515.631	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/0:229:209,20:209:7485:20:720:0,-3.80709,-608.562	0/0:144:134,10:134:4791:10:356:0,-10.9671,-398.965	0/0:203:203,0:203:7261:0:0:0,-61.1091,-653.541	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/0:408:407,1:407:14567:1:36:0,-119.222,-1307.17	0/0:208:208,0:208:7440:0:0:0,-62.6142,-669.643	0/1:48:39,9:39:1404:9:320:-14.6929,0,-112.21	.:.:.:.:.:.:.:.	0/1:150:135,15:135:4840:15:536:-3.41566,0,-390.599	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:182:144,38:144:5159:38:1342:-66.2882,0,-409.662	0/1:46:35,11:35:1256:11:392:-21.7727,0,-99.4979	0/0:120:120,0:120:4275:0:0:0,-36.1236,-384.927	0/1:107:78,29:78:2787:29:1040:-61.6683,0,-218.86	0/1:131:114,17:114:4074:17:608:-14.9861,0,-327.411	0/0:205:198,7:198:7089:7:252:0,-38.6822,-615.039	0/0:176:176,0:176:6308:0:0:0,-52.9813,-567.812	0/0:152:152,0:152:5451:0:0:0,-45.7566,-490.717	0/0:172:172,0:172:6150:0:0:0,-51.7772,-553.599	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:138:111,27:111:3967:27:972:-46.2333,0,-315.679	0/0:75:71,4:71:2540:4:144:0,-9.26363,-215.535	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:114:98,16:98:3488:16:568:-17.1344,0,-279.768	0/0:100:100,0:100:3564:0:0:0,-30.103,-320.967	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:17:16,1:16:576:1:27:0,-2.41773,-49.4752	0/1:104:90,14:90:3232:14:500:-14.0291,0,-259.794	0/0:172:172,0:172:6159:0:0:0,-51.7772,-554.408	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:89:76,13:76:2691:13:468:-15.668,0,-215.641	0/0:330:330,0:330:11781:0:0:0,-99.3399,-1060.15	0/1:73:57,16:57:2039:16:576:-30.1998,0,-161.806	0/0:152:152,0:152:5429:0:0:0,-45.7566,-488.739	0/1:159:119,40:119:4267:40:1423:-80.5029,0,-336.343	0/1:71:43,28:43:1548:28:1004:-69.298,0,-118.24	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/0:128:128,0:128:4561:0:0:0,-38.5318,-410.656	0/0:118:118,0:118:4218:0:0:0,-35.5215,-379.8	0/1:20:17,3:17:604:3:104:-3.68221,0,-48.67	0/0:210:210,0:210:7512:0:0:0,-63.2163,-676.123	0/1:81:68,13:68:2444:13:464:-17.7123,0,-195.831	0/0:330:330,0:330:11812:0:0:0,-99.3399,-1062.81	0/0:221:221,0:221:7912:0:0:0,-66.5276,-712.103	0/1:93:73,20:73:2612:20:720:-37.1321,0,-207.332	0/1:114:101,13:101:3628:13:468:-8.14223,0,-292.407	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:162:162,0:162:5797:0:0:0,-48.7669,-521.842	0/0:151:151,0:151:5395:0:0:0,-45.4555,-485.682	0/0:287:286,1:286:10204:1:36:0,-82.7973,-914.69	0/0:175:175,0:175:6267:0:0:0,-52.6802,-564.123	0/0:102:102,0:102:3642:0:0:0,-30.7051,-327.984	0/1:64:55,9:55:1967:9:312:-9.14944,0,-158.038	0/0:219:219,0:219:7850:0:0:0,-65.9256,-706.525	0/1:30:23,7:23:828:7:248:-13.6324,0,-65.8132	0/1:67:42,25:42:1504:25:888:-60.07,0,-115.486	0/0:140:140,0:140:5021:0:0:0,-42.1442,-452.034	0/0:33:32,1:32:1137:1:36:0,-6.33571,-99.0387	0/1:114:92,22:92:3281:22:783:-36.4755,0,-261.191	0/1:55:31,24:31:1112:24:847:-59.9897,0,-83.8347	0/0:131:130,1:130:4640:1:36:0,-35.8367,-414.163	0/0:215:215,0:215:7699:0:0:0,-64.7214,-692.943
chr04	20559503	.	TGTG	CGTA,TGTA	86000.7	PASS	AB=0.520202,0.476768;ABP=10.0292,12.2928;AC=141,47;AF=0.75,0.25;AN=188;AO=3079,951;CIGAR=1X2M1X,3M1X;DP=4046;DPB=4046;DPRA=10.8656,1.07718;EPP=6688.97,2068.08;EPPR=5.18177;GTI=2;LEN=4,1;MEANALT=1.65591,2.08163;MQM=58.62,58.4427;MQMR=60;NS=94;NUMALT=2;ODDS=2.23435;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=109260,34030;QR=36;RO=1;RPL=3079,951;RPP=6688.97,2068.08;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=6688.97,2068.08;SAR=3079,951;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:8:0,6,2:0:0:6,2:216,68:-23.4951,-5.85565,-4.04947,-17.9843,0,-17.3823	1/1:79:0,79,0:0:0:79,0:2783,0:-250.62,-23.7814,0,-250.62,-23.7814,-250.62	1/1:52:0,52,0:0:0:52,0:1843,0:-165.904,-15.6536,0,-165.904,-15.6536,-165.904	1/1:75:0,73,0:0:0:73,0:2586,0:-232.624,-21.9752,0,-232.624,-21.9752,-232.624	1/1:40:0,40,0:0:0:40,0:1426,0:-128.392,-12.0412,0,-128.392,-12.0412,-128.392	1/1:21:0,21,0:0:0:21,0:739,0:-66.832,-6.32163,0,-66.832,-6.32163,-66.832	1/2:63:0,31,32:0:0:31,32:1101,1137:-182.617,-92.9108,-83.5789,-90.0606,0,-80.4277	1/1:98:0,97,1:0:0:97,1:3426,36:-308.191,-29.1999,0,-305.253,-25.9027,-304.952	1/2:39:0,26,12:0:0:26,12:911,402:-106.62,-32.5078,-24.681,-74.0943,0,-70.4819	1/1:66:0,66,0:0:0:66,0:2336,0:-210.424,-19.868,0,-210.424,-19.868,-210.424	1/1:32:0,31,0:0:0:31,0:1100,0:-98.9502,-9.33193,0,-98.9502,-9.33193,-98.9502	1/1:16:0,16,0:0:0:16,0:575,0:-52.0847,-4.81648,0,-52.0847,-4.81648,-52.0847	1/1:28:0,28,0:0:0:28,0:990,0:-89.3939,-8.42884,0,-89.3939,-8.42884,-89.3939	1/1:33:0,33,0:0:0:33,0:1180,0:-106.291,-9.93399,0,-106.291,-9.93399,-106.291	1/2:14:0,3,10:0:0:3,10:100,360:-37.4623,-29.3744,-28.4713,-8.07379,0,-5.06349	1/2:15:0,5,10:0:0:5,10:180,360:-44.3858,-29.7104,-28.2052,-15.035,0,-12.0247	1/1:31:0,31,0:0:0:31,0:1114,0:-100.572,-9.33193,0,-100.572,-9.33193,-100.572	1/2:20:0,12,8:0:0:12,8:432,288:-59.1,-23.8592,-20.2468,-35.6006,0,-33.1924	1/2:10:0,7,3:0:0:7,3:252,108:-29.734,-9.17208,-7.06487,-20.9217,0,-20.0187	1/2:77:0,45,32:0:0:45,32:1588,1148:-223.296,-93.9922,-80.4458,-129.66,0,-120.027	1/2:36:0,24,12:0:0:24,12:848,428:-104.012,-35.1175,-27.8928,-69.2488,0,-65.6365	1/2:56:0,19,37:0:0:19,37:674,1317:-162.593,-107.692,-101.972,-55.2566,0,-44.1185	1/2:19:0,11,8:0:0:11,8:396,288:-56.1708,-23.8592,-20.5478,-32.6714,0,-30.2632	1/2:73:0,65,8:0:0:65,8:2296,288:-210.456,-23.841,-4.27408,-186.974,0,-184.566	1/1:20:0,20,0:0:0:20,0:707,0:-63.9147,-6.0206,0,-63.9147,-6.0206,-63.9147	1/2:175:0,94,81:0:0:94,81:3348,2896:-509.339,-236.47,-208.173,-273.226,0,-248.842	1/2:60:0,32,28:0:0:32,28:1131,1008:-174.367,-82.3227,-72.6897,-92.4002,0,-83.9714	1/1:11:0,11,0:0:0:11,0:390,0:-35.3075,-3.31133,0,-35.3075,-3.31133,-35.3075	1/2:123:0,54,69:0:0:54,69:1918,2467:-357.798,-201.513,-185.257,-156.641,0,-135.87	1/2:83:0,44,39:0:0:44,39:1546,1404:-240.212,-114.623,-101.377,-125.945,0,-114.205	1/1:63:0,63,0:0:0:63,0:2219,0:-199.944,-18.9649,0,-199.944,-18.9649,-199.944	1/2:7:0,2,5:0:0:2,5:71,180:-20.8145,-15.035,-14.4329,-6.13557,0,-4.63042	1/2:4:0,1,3:0:0:1,3:36,108:-12.0999,-9.16481,-8.86378,-3.29465,0,-2.39156	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:8:0,2,6:0:0:2,6:71,216:-23.7572,-17.9843,-17.3823,-6.12846,0,-4.32228	1/1:57:0,57,0:0:0:57,0:2020,0:-182.073,-17.1587,0,-182.073,-17.1587,-182.073	1/1:93:0,93,0:0:0:93,0:3286,0:-295.199,-27.9958,0,-295.199,-27.9958,-295.199	1/2:15:0,7,8:0:0:7,8:252,288:-44.4211,-23.8592,-21.752,-20.9217,0,-18.5135	2/2:4:0,0,4:0:0:0,4:0,144:-13.304,-13.304,-13.304,-1.20412,-1.20412,0	1/2:87:0,39,48:0:0:39,48:1396,1705:-252.828,-139.179,-127.439,-114.005,0,-99.5556	1/1:6:0,6,0:0:0:6,0:215,0:-19.6854,-1.80618,0,-19.6854,-1.80618,-19.6854	1/2:55:0,27,27:0:0:27,27:965,972:-157.7,-79.1863,-71.0585,-78.55,0,-70.4222	1/2:11:0,5,6:0:0:5,6:180,216:-32.668,-17.9809,-16.4758,-15.0469,0,-13.2407	1/1:19:0,18,0:0:0:18,0:642,0:-57.8787,-5.41854,0,-57.8787,-5.41854,-57.8787	1/2:38:0,25,13:0:0:25,13:876,468:-109.819,-38.5463,-31.0205,-71.6293,0,-67.7159	1/2:47:0,22,25:0:0:22,25:780,896:-136.971,-73.4346,-66.8119,-63.8929,0,-56.3672	1/2:76:0,51,25:0:0:51,25:1791,890:-218.277,-72.885,-57.5325,-145.746,0,-138.22	1/1:48:0,48,0:0:0:48,0:1687,0:-152.115,-14.4494,0,-152.115,-14.4494,-152.115	1/1:60:0,60,0:0:0:60,0:2139,0:-192.776,-18.0618,0,-192.776,-18.0618,-192.776	1/1:112:0,112,0:0:0:112,0:3965,0:-356.927,-33.7154,0,-356.927,-33.7154,-356.927	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:49:0,29,20:0:0:29,20:1030,720:-143.015,-59.0896,-50.3597,-84.2835,0,-78.2629	1/2:21:0,15,6:0:0:15,6:540,216:-62.0389,-17.9843,-13.4689,-44.4144,0,-42.6082	1/1:10:0,10,0:0:0:10,0:359,0:-32.6536,-3.0103,0,-32.6536,-3.0103,-32.6536	1/2:64:0,29,35:0:0:29,35:1025,1248:-184.878,-101.726,-92.9959,-83.5058,0,-72.9698	1/1:10:0,10,0:0:0:10,0:359,0:-32.6536,-3.0103,0,-32.6536,-3.0103,-32.6536	1/1:3:0,3,0:0:0:3,0:102,0:-9.51503,-0.90309,0,-9.51503,-0.90309,-9.51503	1/2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chr04	20560447	.	C	T	34484.6	PASS	AB=0.53327;ABP=43.7569;AC=44;AF=0.234043;AN=188;AO=2270;CIGAR=1X;DP=8007;DPB=8007;DPRA=1.32559;EPP=4932.25;EPPR=12443.4;GTI=4;LEN=1;MEANALT=1.02128;MQM=40.4441;MQMR=54.1613;NS=94;NUMALT=1;ODDS=0.883381;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79544;QR=205023;RO=5733;RPL=2;RPP=4914.9;RPPR=12443.4;RPR=2268;RUN=1;SAF=2;SAP=4914.9;SAR=2268;SRF=0;SRP=12452.1;SRR=5733;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:114:53,61:53:1892:61:2127:-145.659,0,-135.304	0/0:30:30,0:30:1080:0:0:0,-9.0309,-96.1332	0/0:81:81,0:81:2878:0:0:0,-24.3834,-256.449	0/0:141:140,0:140:5015:0:0:0,-42.1442,-450.298	0/0:91:90,1:90:3227:1:36:0,-23.9392,-286.032	0/0:75:75,0:75:2692:0:0:0,-22.5772,-241.639	0/1:96:37,59:37:1319:59:2059:-150.585,0,-89.6652	0/0:49:49,0:49:1749:0:0:0,-14.7505,-156.255	0/1:142:67,75:67:2383:75:2640:-178.862,0,-169.735	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.1867	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.4867	0/0:86:86,0:86:3064:0:0:0,-25.8886,-275.081	0/0:61:61,0:61:2179:0:0:0,-18.3628,-195.478	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.254	0/1:60:39,21:39:1395:21:744:-47.4139,0,-107.67	0/1:58:26,32:26:936:32:1131:-79.9423,0,-66.9763	0/0:35:35,0:35:1243:0:0:0,-10.536,-111.541	0/1:27:12,15:12:415:15:520:-35.8203,0,-29.442	0/1:24:15,9:15:540:9:316:-19.2793,0,-41.3076	0/1:101:42,59:42:1508:59:2076:-151.249,0,-105.462	0/1:139:68,71:68:2435:71:2512:-173.202,0,-176.808	0/1:192:57,135:57:2048:135:4670:-353.085,0,-126.559	0/1:116:52,64:52:1868:64:2264:-163.48,0,-133.276	0/0:92:84,8:84:3008:8:276:0,-3.1596,-245.903	0/0:106:106,0:106:3804:0:0:0,-31.9092,-339.896	0/1:335:165,170:165:5894:170:5949:-420.389,0,-428.91	0/1:188:107,81:107:3835:81:2836:-186.328,0,-286.903	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.1436	0/1:301:152,149:152:5446:149:5161:-362.167,0,-399.337	0/1:109:61,48:61:2180:48:1712:-114.316,0,-163.033	0/0:76:75,0:75:2683:0:0:0,-22.5772,-241.085	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/1:27:15,12:15:536:12:428:-29.237,0,-40.3114	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2801	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.9224	0/1:14:10,4:10:356:4:144:-8.3197,0,-28.0872	0/0:198:198,0:198:7071:0:0:0,-59.6039,-635.632	0/0:154:154,0:154:5532:0:0:0,-46.3586,-495.745	0/1:46:19,27:19:680:27:956:-66.5434,0,-46.8335	0/1:5:2,3:2:72:3:108:-8.16742,0,-5.31226	0/1:97:42,55:42:1499:55:1913:-135.029,0,-105.75	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.4899	0/1:162:90,72:90:3185:72:2546:-170.656,0,-236.815	0/1:39:19,20:19:684:20:699:-49.9154,0,-50.1075	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.379	0/1:221:83,137:83:2980:137:4813:-357.425,0,-201.765	0/1:82:46,36:46:1644:36:1268:-81.4242,0,-123.101	0/1:116:64,52:64:2300:52:1836:-125.895,0,-171.941	0/0:90:90,0:90:3221:0:0:0,-27.0927,-289.425	0/0:86:86,0:86:3064:0:0:0,-25.8886,-275.486	0/0:167:167,0:167:5979:0:0:0,-50.272,-537.009	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.359	0/1:109:58,51:58:2080:51:1773:-118.017,0,-153.921	0/1:80:27,53:27:964:53:1865:-138.736,0,-62.9666	0/0:19:19,0:19:675:0:0:0,-5.71957,-60.7486	0/1:98:27,71:27:944:71:2472:-181.963,0,-55.5195	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.754	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.109	0/1:23:16,7:16:576:7:244:-14.9832,0,-45.0919	0/1:131:62,69:62:2203:69:2417:-169.678,0,-157.357	0/0:97:97,0:97:3467:0:0:0,-29.1999,-311.575	0/0:8:7,0:7:252:0:0:0,-2.10721,-22.6586	0/1:169:80,89:80:2852:89:3136:-223.624,0,-205.805	0/0:122:122,0:122:4352:0:0:0,-36.7257,-391.397	0/1:75:44,31:44:1563:31:1091:-71.8426,0,-118.094	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.318	0/1:137:64,73:64:2283:73:2568:-180.926,0,-164.159	0/1:79:24,55:24:864:55:1941:-145.475,0,-54.2426	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8026	0/0:38:38,0:38:1368:0:0:0,-11.4391,-122.958	0/0:42:42,0:42:1483:0:0:0,-12.6433,-133.721	0/1:11:6,5:6:216:5:150:-10.1976,0,-16.4649	0/0:143:142,1:142:5096:1:36:0,-39.6597,-452.42	0/1:60:31,29:31:1103:29:1015:-67.7754,0,-80.945	0/0:277:277,0:277:9910:0:0:0,-83.3853,-886.754	0/0:112:112,0:112:4015:0:0:0,-33.7154,-360.935	0/1:129:40,89:40:1417:89:3139:-221.939,0,-88.6504	0/1:60:29,31:29:1044:31:1088:-74.1612,0,-75.7606	0/1:20:2,18:2:72:18:624:-47.6495,0,-0.798934	0/0:83:83,0:83:2980:0:0:0,-24.9855,-267.788	0/0:53:53,0:53:1888:0:0:0,-15.9546,-169.427	0/0:237:237,0:237:8491:0:0:0,-71.3441,-762.196	0/0:52:52,0:52:1855:0:0:0,-15.6536,-166.987	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.571	0/1:37:16,21:16:572:21:740:-53.6252,0,-40.5548	0/0:130:130,0:130:4663:0:0:0,-39.1339,-419.217	0/1:28:14,14:14:504:14:480:-32.0374,0,-36.9234	0/1:75:36,39:36:1292:39:1338:-89.5956,0,-93.4987	0/0:66:66,0:66:2368:0:0:0,-19.868,-212.481	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.1657	0/1:101:54,47:54:1927:47:1655:-110.877,0,-142.818	0/1:5:4,1:4:144:1:32:-1.65348,0,-11.7872	0/0:96:96,0:96:3432:0:0:0,-28.8989,-308.351	0/0:87:87,0:87:3112:0:0:0,-26.1896,-279.746
chr04	20560462	.	G	C	116866	PASS	AB=0.455311;ABP=77.1493;AC=143;AF=0.760638;AN=188;AO=5682;CIGAR=1X;DP=8042;DPB=8042;DPRA=0;EPP=12332.6;EPPR=5099.47;GTI=5;LEN=1;MEANALT=1.05319;MQM=54.1241;MQMR=40.4794;NS=94;NUMALT=1;ODDS=0.35548;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202867;QR=83996;RO=2355;RPL=5681;RPP=12332.6;RPPR=5116.83;RPR=1;RUN=1;SAF=0;SAP=12341.3;SAR=5682;SRF=2;SRP=5099.47;SRR=2353;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:116:65,51:65:2328:51:1816:-127.64,0,-160.851	1/1:32:0,32:0:0:32:1152:-102.594,-9.63296,0	1/1:80:0,80:0:0:80:2849:-253.83,-24.0824,0	1/1:140:0,140:0:0:140:5001:-449.524,-42.1442,0	1/1:88:1,87:1:36:87:3105:-275.23,-23.0361,0	1/1:77:0,77:0:0:77:2764:-247.61,-23.1793,0	0/1:95:60,35:60:2160:35:1241:-82.7403,0,-159.047	1/1:49:0,49:0:0:49:1746:-156.456,-14.7505,0	0/1:146:83,63:83:2947:63:2249:-157.433,0,-202.486	1/1:28:0,28:0:0:28:1004:-90.5915,-8.42884,0	1/1:28:0,28:0:0:28:1004:-90.3009,-8.42884,0	1/1:85:0,84:0:0:84:3000:-268.993,-25.2865,0	1/1:62:0,62:0:0:62:2220:-199.148,-18.6639,0	1/1:51:0,51:0:0:51:1804:-162.031,-15.3525,0	0/1:59:22,37:22:792:37:1332:-102.319,0,-51.8013	0/1:56:32,24:32:1148:24:864:-61.1142,0,-81.3922	1/1:35:0,35:0:0:35:1242:-111.447,-10.5361,0	0/1:27:16,11:16:567:11:396:-27.7645,0,-39.5078	0/1:24:9,15:9:320:15:536:-40.9508,0,-19.5388	0/1:101:59,42:59:2112:42:1463:-101.419,0,-154.041	0/1:138:71,67:71:2540:67:2404:-174.324,0,-175.325	0/1:196:138,58:138:4915:58:2080:-128.149,0,-373.826	0/1:121:66,55:66:2364:55:1964:-140.402,0,-170.428	1/1:88:8,80:8:284:80:2860:-231.184,-1.30094,0	1/1:108:0,107:0:0:107:3821:-340.769,-32.2102,0	0/1:344:178,166:178:6367:166:5920:-428.209,0,-452.495	0/1:188:86,102:86:3050:102:3627:-268.685,0,-204.588	1/1:24:0,24:0:0:24:864:-77.8429,-7.22472,0	0/1:306:155,151:155:5521:151:5377:-391.702,0,-389.937	0/1:110:49,61:49:1744:61:2187:-163.352,0,-116.863	1/1:78:0,78:0:0:78:2782:-250.174,-23.4803,0	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:27:13,14:13:468:14:496:-36.756,0,-32.6352	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	1/1:6:0,6:0:0:6:212:-17.8916,-1.80618,0	0/1:14:4,10:4:144:10:360:-28.4419,0,-8.3197	1/1:197:0,197:0:0:197:7053:-634.148,-59.3029,0	1/1:152:0,152:0:0:152:5430:-486.67,-45.7566,0	0/1:44:27,17:27:959:17:612:-41.7788,0,-67.2499	0/1:6:4,2:4:144:2:72:-5.01123,0,-10.9754	0/1:98:56,42:56:1996:42:1493:-104.907,0,-140.774	1/1:25:0,25:0:0:25:877:-79.1399,-7.52575,0	0/1:164:77,87:77:2732:87:3124:-230.791,0,-185.884	0/1:41:24,17:24:851:17:612:-43.0312,0,-62.4757	1/1:43:0,43:0:0:43:1529:-137.634,-12.9443,0	0/1:224:142,82:142:5071:82:2928:-196.185,0,-378.322	0/1:82:36,46:36:1275:46:1637:-122.464,0,-81.5954	0/1:118:55,63:55:1950:63:2264:-168.151,0,-135.1	1/1:90:0,90:0:0:90:3201:-287.721,-27.0927,0	1/1:85:0,85:0:0:85:3048:-274.013,-25.5876,0	1/1:166:0,166:0:0:166:5919:-531.982,-49.971,0	1/1:10:0,10:0:0:10:341:-30.9979,-3.0103,0	0/1:111:52,59:52:1855:59:2107:-155.718,0,-123.553	0/1:81:54,27:54:1940:27:964:-62.6612,0,-144.848	1/1:19:0,19:0:0:19:684:-61.5548,-5.71957,0	0/1:99:73,26:73:2595:26:927:-53.5235,0,-192.903	1/1:86:0,86:0:0:86:3077:-276.928,-25.8886,0	1/1:14:0,13:0:0:13:468:-42.088,-3.91339,0	0/1:24:8,16:8:288:16:571:-44.3958,0,-17.95	0/1:132:72,60:72:2566:60:2138:-151.763,0,-181.467	1/1:96:0,96:0:0:96:3435:-308.697,-28.8989,0	1/1:8:0,8:0:0:8:284:-25.8001,-2.40824,0	0/1:166:87,79:87:3078:79:2840:-205.629,0,-219.572	1/1:125:0,125:0:0:125:4442:-398.948,-37.6288,0	0/1:75:32,43:32:1139:43:1536:-115.374,0,-75.8144	1/1:62:0,62:0:0:62:2198:-197.544,-18.6639,0	0/1:140:77,63:77:2748:63:2260:-161.266,0,-195.789	0/1:84:60,24:60:2120:24:864:-52.7375,0,-159.131	1/1:19:0,19:0:0:19:684:-61.8026,-5.71957,0	1/1:38:0,38:0:0:38:1345:-121.05,-11.4391,0	1/1:43:0,43:0:0:43:1525:-137.483,-12.9443,0	0/1:11:5,6:5:180:6:216:-16.4649,0,-12.5112	1/1:139:1,138:1:36:138:4926:-437.207,-38.4556,0	0/1:62:31,31:31:1099:31:1116:-81.2319,0,-73.8368	1/1:268:0,268:0:0:268:9511:-852.555,-80.676,0	1/1:111:0,111:0:0:111:3966:-356.536,-33.4143,0	0/1:132:90,41:90:3232:41:1476:-93.0917,0,-229.118	0/1:60:31,29:31:1116:29:1040:-75.405,0,-75.9623	0/0:19:18,1:18:635:1:36:0,-2.13034,-50.718	1/1:83:0,83:0:0:83:2976:-267.431,-24.9855,0	1/1:55:0,55:0:0:55:1972:-176.947,-16.5567,0	1/1:235:0,234:0:0:234:8354:-749.532,-70.441,0	1/1:51:0,51:0:0:51:1827:-164.493,-15.3525,0	1/1:61:0,61:0:0:61:2173:-195.394,-18.3628,0	0/1:43:24,19:24:860:19:676:-48.0977,0,-62.2107	1/1:128:0,128:0:0:128:4596:-413.194,-38.5318,0	0/1:29:15,14:15:536:14:494:-35.7078,0,-36.078	0/1:77:42,35:42:1508:35:1260:-89.9235,0,-101.716	1/1:69:0,69:0:0:69:2471:-221.745,-20.7711,0	1/1:24:0,24:0:0:24:844:-75.4445,-7.22472,0	0/1:98:46,52:46:1644:52:1864:-138.212,0,-111.017	0/1:5:1,4:1:36:4:144:-11.7872,0,-1.99755	1/1:96:0,96:0:0:96:3402:-305.861,-28.8989,0	1/1:86:0,86:0:0:86:3080:-276.968,-25.8886,0
chr04	20607463	.	TACATA	AACGTA,AACATA	133572	PASS	AB=0.495211,0.494891;ABP=3.63429,3.72026;AC=141,45;AF=0.758065,0.241935;AN=186;AO=4806,1557;CIGAR=1X2M1X2M,1X5M;DP=6426;DPB=6426;DPRA=0,1.09416;EPP=10171.6,3263.48;EPPR=18.2106;GTI=0;LEN=6,1;MEANALT=2.07527,2.5;MQM=59.6024,59.9467;MQMR=60;NS=93;NUMALT=2;ODDS=0.996575;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165670,55431;QR=214;RO=7;RPL=31,14;RPP=10171.6,3263.48;RPPR=18.2106;RPR=4775,1543;RUN=1,1;SAF=0,0;SAP=10439.1,3383.99;SAR=4806,1557;SRF=0;SRP=18.2106;SRR=7;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:12:0,4,8:0:0:4,8:124,288:-33.7575,-23.8592,-22.655,-10.2242,0,-7.81591	1/1:122:0,122,0:0:0:122,0:4210,0:-378.898,-36.7257,0,-378.898,-36.7257,-378.898	1/1:61:0,61,0:0:0:61,0:2139,0:-192.772,-18.3628,0,-192.772,-18.3628,-192.772	1/1:146:0,145,0:0:0:145,0:5009,0:-450.681,-43.6494,0,-450.681,-43.6494,-450.681	1/1:55:0,53,2:0:0:53,2:1825,72:-164.163,-15.9546,0,-158.288,-9.71993,-157.686	1/1:41:0,39,0:0:0:39,0:1313,0:-118.182,-11.7402,0,-118.182,-11.7402,-118.182	1/2:98:0,46,52:0:0:46,52:1575,1872:-280.938,-153.106,-139.258,-128.183,0,-112.53	1/1:73:0,72,1:0:0:72,1:2459,36:-221.147,-21.6742,0,-218.209,-18.3769,-217.908	1/2:50:0,29,20:0:0:29,20:996,716:-139.369,-58.5016,-49.7717,-80.9727,0,-74.9521	1/1:72:0,72,0:0:0:72,0:2544,0:-229.206,-21.6742,0,-229.206,-21.6742,-229.206	1/1:49:0,49,0:0:0:49,0:1695,0:-152.83,-14.7505,0,-152.83,-14.7505,-152.83	1/1:57:0,55,0:0:0:55,0:1858,0:-167.251,-16.5567,0,-167.251,-16.5567,-167.251	1/1:62:0,62,0:0:0:62,0:2109,0:-190.05,-18.6639,0,-190.05,-18.6639,-190.05	1/1:57:0,53,0:0:0:53,0:1789,0:-160.977,-15.9546,0,-160.977,-15.9546,-160.977	1/2:51:0,19,32:0:0:19,32:678,1148:-149.269,-93.9969,-88.2773,-55.6295,0,-45.9966	1/2:47:0,22,25:0:0:22,25:736,888:-132.24,-72.7133,-66.0906,-59.8707,0,-52.3449	1/1:64:0,62,0:0:0:62,0:2135,0:-192.104,-18.6639,0,-192.104,-18.6639,-192.104	1/2:47:1,23,23:1:36:23,23:818,804:-128.813,-62.4556,-58.4698,-63.7135,0,-59.7274	1/2:47:0,25,21:0:0:25,21:847,756:-130.446,-61.7825,-54.2568,-68.7574,0,-62.4357	1/2:147:0,77,67:0:0:77,67:2696,2396:-414.814,-195.464,-172.285,-219.439,0,-199.27	1/2:100:1,52,47:1:30:52,47:1767,1684:-277.998,-135,-121.744,-140.95,0,-129.199	1/2:85:0,31,54:0:0:31,54:1074,1932:-245.176,-157.901,-148.569,-87.6256,0,-71.37	1/2:36:0,21,15:0:0:21,15:729,536:-103.315,-44.0594,-37.7377,-59.6086,0,-55.0931	1/1:63:0,63,0:0:0:63,0:2212,0:-199.322,-18.9649,0,-199.322,-18.9649,-199.322	1/1:41:0,41,0:0:0:41,0:1430,0:-128.984,-12.3422,0,-128.984,-12.3422,-128.984	1/2:259:0,125,134:0:0:125,134:4378,4782:-746.412,-390.198,-352.569,-356.567,0,-316.229	1/2:146:0,69,76:0:0:69,76:2384,2693:-413.128,-219.445,-198.674,-193.741,0,-170.863	1/1:15:0,15,0:0:0:15,0:509,0:-46.1317,-4.51545,0,-46.1317,-4.51545,-46.1317	1/2:165:0,81,84:0:0:81,84:2815,2980:-472.001,-243.145,-218.762,-229.207,0,-203.92	1/2:104:0,68,36:0:0:68,36:2356,1287:-296.758,-105.296,-84.8257,-191.815,0,-180.978	1/1:61:0,60,0:0:0:60,0:2089,0:-187.985,-18.0618,0,-187.985,-18.0618,-187.985	1/2:5:0,4,1:0:0:4,1:140,36:-14.6799,-3.29724,-2.09312,-11.7405,0,-11.4394	1/2:11:0,4,6:0:0:4,6:143,216:-29.4107,-17.7444,-16.5403,-11.7699,0,-9.9637	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:8:0,5,3:0:0:5,3:180,93:-22.4919,-7.77364,-6.26849,-15.0469,0,-14.1438	1/1:148:1,146,0:1:35:146,0:4974,0:-444.315,-41.1076,0,-444.616,-43.9504,-447.464	1/1:128:0,127,0:0:0:127,0:4347,0:-391.12,-38.2308,0,-391.12,-38.2308,-391.12	1/2:73:0,32,40:0:0:32,40:1078,1414:-202.612,-115.291,-105.658,-87.4398,0,-75.3986	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:100:1,61,36:1:28:61,36:2121,1279:-274.206,-102.064,-85.9176,-170.284,0,-161.664	1/1:47:0,46,0:0:0:46,0:1607,0:-144.565,-13.8474,0,-144.565,-13.8474,-144.565	1/2:110:0,61,49:0:0:61,49:2129,1733:-314.661,-141.502,-123.139,-173.51,0,-158.76	1/2:47:1,22,24:1:32:22,24:775,852:-129.672,-66.8774,-62.8317,-60.551,0,-55.9033	1/1:62:0,62,0:0:0:62,0:1935,0:-174.272,-18.6639,0,-174.272,-18.6639,-174.272	1/2:44:0,22,22:0:0:22,22:752,792:-125.734,-64.7123,-58.0897,-61.3715,0,-54.7489	1/2:55:0,26,29:0:0:26,29:903,1027:-157.17,-83.822,-75.9952,-73.6981,0,-64.9682	1/2:103:0,42,59:0:0:42,59:1448,2112:-289.941,-172.33,-159.687,-117.7,0,-99.9395	1/1:85:0,84,0:0:0:84,0:2888,0:-259.836,-25.2865,0,-259.836,-25.2865,-259.836	1/1:104:0,103,0:0:0:103,0:3600,0:-323.862,-31.0061,0,-323.862,-31.0061,-323.862	1/1:156:0,155,0:0:0:155,0:5365,0:-482.709,-46.6597,0,-482.709,-46.6597,-482.709	1/1:7:0,7,0:0:0:7,0:250,0:-22.8467,-2.10721,0,-22.8467,-2.10721,-22.8467	1/2:101:0,45,55:0:0:45,55:1566,1969:-287.981,-160.657,-147.111,-127.405,0,-110.849	1/2:62:0,37,25:0:0:37,25:1293,887:-177.8,-72.6224,-61.4843,-105.531,0,-98.0048	1/1:6:0,6,0:0:0:6,0:216,0:-19.7896,-1.80618,0,-19.7896,-1.80618,-19.7896	1/2:95:0,47,47:0:0:47,47:1615,1680:-268.216,-137.082,-122.933,-131.232,0,-117.083	1/1:11:0,11,0:0:0:11,0:389,0:-35.3475,-3.31133,0,-35.3475,-3.31133,-35.3475	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.9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chr04	20998042	.	G	A	154386	PASS	AB=0.488787;ABP=8.02601;AC=144;AF=0.774194;AN=186;AO=7356;CIGAR=1X;DP=9722;DPB=9722;DPRA=0;EPP=15976.4;EPPR=5136.37;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.9985;MQMR=60;NS=93;NUMALT=1;ODDS=0.0684807;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261669;QR=84530;RO=2364;RPL=7356;RPP=15976.4;RPPR=5136.37;RPR=0;RUN=1;SAF=7356;SAP=15976.4;SAR=0;SRF=2364;SRP=5136.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:16,13:16:576:13:451:-32.1899,0,-43.4451	1/1:211:0,210:0:0:210:7475:-672.438,-63.2163,0	1/1:99:0,99:0:0:99:3540:-318.809,-29.802,0	1/1:161:0,161:0:0:161:5699:-513.034,-48.4658,0	1/1:67:0,67:0:0:67:2385:-214.906,-20.169,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:123:69,54:69:2471:54:1909:-135.059,0,-185.616	1/1:186:0,186:0:0:186:6623:-596.15,-55.9916,0	0/1:57:27,30:27:972:30:1067:-79.1825,0,-70.6392	1/1:107:0,107:0:0:107:3786:-340.939,-32.2102,0	1/1:59:0,59:0:0:59:2101:-189.358,-17.7608,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:59:0,59:0:0:59:2101:-189.358,-17.7608,0	1/1:75:0,75:0:0:75:2637:-237.575,-22.5773,0	0/1:67:43,24:43:1544:24:852:-56.8314,0,-119.084	0/1:48:24,24:24:856:24:860:-63.2724,0,-62.9117	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	0/1:77:48,29:48:1712:29:1040:-70.7351,0,-131.186	0/1:34:17,17:17:612:17:608:-44.817,0,-45.1784	0/1:237:110,127:110:3921:127:4496:-333.468,0,-281.739	0/1:165:67,98:67:2404:98:3484:-264.104,0,-166.947	0/1:100:60,40:60:2156:40:1424:-98.3545,0,-164.204	0/1:24:14,10:14:504:10:356:-25.1565,0,-38.4734	1/1:118:6,112:6:216:112:4012:-341.478,-15.731,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:426:219,207:219:7835:207:7398:-537.629,0,-576.939	0/1:205:97,108:97:3467:108:3818:-282.107,0,-250.531	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:300:150,150:150:5384:150:5345:-390.875,0,-394.381	0/1:240:115,125:115:4106:125:4456:-328.965,0,-297.478	1/1:111:0,111:0:0:111:3918:-352.814,-33.4143,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	.:.:.:.:.:.:.:.	1/1:173:1,172:1:36:172:6146:-549.641,-48.4799,0	1/1:202:0,202:0:0:202:7216:-649.497,-60.8081,0	0/1:52:30,22:30:1072:22:792:-55.9521,0,-81.1389	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:149:72,77:72:2573:77:2726:-200.723,0,-186.964	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:149:69,80:69:2457:80:2845:-211.434,0,-176.53	0/1:57:33,24:33:1176:24:860:-60.5631,0,-88.9891	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:68:37,31:37:1320:31:1084:-77.3988,0,-98.6319	0/1:138:65,73:65:2320:73:2586:-191.448,0,-167.518	0/1:201:104,97:104:3692:97:3457:-250.835,0,-271.976	1/1:178:1,177:1:36:177:6262:-560.082,-49.9851,0	1/1:214:0,214:0:0:214:7620:-685.841,-64.4204,0	1/1:215:0,215:0:0:215:7630:-686.743,-64.7215,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:117:57,60:57:2025:60:2136:-157.288,0,-147.3	0/1:65:32,33:32:1139:33:1176:-86.5808,0,-83.2514	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:149:0,149:0:0:149:5305:-477.586,-44.8535,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:26:14,12:14:504:12:424:-30.6696,0,-37.8713	0/1:82:35,47:35:1248:47:1664:-125.361,0,-87.9404	1/1:119:1,118:1:36:118:4198:-374.404,-32.2243,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:259:140,119:140:5016:119:4215:-301.565,0,-373.62	1/1:314:3,311:3:108:311:11078:-986.841,-84.4483,0	0/1:73:26,47:26:928:47:1688:-130.232,0,-61.8631	1/1:89:0,89:0:0:89:3156:-284.267,-26.7917,0	0/1:167:77,90:77:2764:90:3199:-237.862,0,-198.729	0/1:148:108,40:108:3856:40:1419:-83.4542,0,-302.684	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	1/1:99:0,99:0:0:99:3505:-315.662,-29.802,0	1/1:84:0,84:0:0:84:2978:-268.253,-25.2865,0	0/1:25:14,11:14:500:11:396:-28.457,0,-37.8104	1/1:145:0,145:0:0:145:5126:-461.486,-43.6494,0	0/1:71:39,32:39:1396:32:1148:-82.2567,0,-104.566	1/1:137:0,137:0:0:137:4841:-435.847,-41.2411,0	1/1:225:0,225:0:0:225:8009:-720.836,-67.7318,0	0/1:127:58,69:58:2088:69:2468:-184.143,0,-149.959	0/1:146:80,66:80:2845:66:2344:-167.27,0,-212.337	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:161:1,160:1:36:160:5686:-508.262,-44.8676,0	1/1:148:0,148:0:0:148:5244:-472.101,-44.5524,0	1/1:203:0,202:0:0:202:7130:-641.403,-60.8081,0	1/1:89:1,88:1:36:88:3160:-281.026,-23.1934,0	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	0/1:84:43,41:43:1523:41:1453:-105.777,0,-112.076	1/1:114:2,112:2:72:112:4004:-353.713,-27.4807,0	0/1:35:18,17:18:648:17:608:-44.516,0,-48.1158	0/1:68:32,36:32:1152:36:1284:-95.3934,0,-83.5201	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:69:42,27:42:1504:27:964:-66.3058,0,-114.884	0/1:57:37,20:37:1328:20:705:-46.6149,0,-102.664	1/1:192:0,192:0:0:192:6841:-615.76,-57.7978,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0
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chr04	21017644	.	A	T	48136.5	PASS	AB=0.498369;ABP=3.1378;AC=44;AF=0.236559;AN=186;AO=2771;CIGAR=1X;DP=11611;DPB=11611;DPRA=1.1359;EPP=5719.99;EPPR=18178.7;GTI=0;LEN=1;MEANALT=1.11111;MQM=59.9282;MQMR=59.9835;NS=93;NUMALT=1;ODDS=3.28729;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99176;QR=316399;RO=8832;RPL=2736;RPP=5719.99;RPPR=18178.7;RPR=35;RUN=1;SAF=2771;SAP=6020.16;SAR=0;SRF=8832;SRP=19181.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:36,30:36:1266:30:1072:-76.9232,0,-94.3706	0/0:125:125,0:125:4461:0:0:0,-37.6287,-401.66	0/0:118:117,1:117:4170:1:36:0,-31.9233,-371.882	0/0:237:237,0:237:8458:0:0:0,-71.3441,-761.222	0/0:115:113,2:113:4033:2:72:0,-27.7817,-356.321	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/1:181:81,100:81:2862:100:3592:-268.998,0,-203.33	0/0:210:210,0:210:7513:0:0:0,-63.2163,-675.57	0/1:159:81,78:81:2912:78:2804:-204.734,0,-214.451	0/0:130:129,1:129:4616:1:36:0,-35.5356,-412.006	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/1:63:26,37:26:924:37:1322:-100.302,0,-64.5128	0/1:91:40,51:40:1380:51:1832:-137.767,0,-97.095	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:61:25,36:25:900:36:1292:-98.2209,0,-62.9582	0/1:33:16,17:16:576:17:599:-44.3032,0,-42.241	0/1:222:122,100:122:4388:100:3596:-257.016,0,-328.262	0/1:182:91,91:91:3264:91:3268:-239.546,0,-239.192	0/1:167:68,99:68:2433:99:3556:-269.974,0,-168.952	0/1:189:104,85:104:3717:85:3003:-213.609,0,-277.835	0/0:182:174,8:174:6240:8:288:0,-28.5201,-535.426	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.518	0/1:481:234,247:234:8376:247:8810:-648.039,0,-609.05	0/1:276:141,135:141:5064:135:4848:-353.382,0,-372.819	0/0:37:36,0:36:1292:0:0:0,-10.8371,-116.224	0/1:308:168,140:168:6020:140:5023:-359.491,0,-449.13	0/1:230:105,124:105:3764:124:4414:-327.643,0,-269.663	0/0:262:262,0:262:9370:0:0:0,-78.8699,-842.406	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:1,4:1:36:4:129:-10.4216,0,-2.09312	0/0:206:206,0:206:7400:0:0:0,-62.0122,-666.035	0/0:296:293,2:293:10520:2:72:0,-82.327,-939.874	0/1:60:26,34:26:928:34:1212:-91.3218,0,-65.7765	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:143:72,71:72:2584:71:2556:-187.235,0,-189.762	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:121:69,52:69:2472:52:1849:-130.263,0,-186.309	0/1:97:49,48:49:1764:48:1724:-126.245,0,-129.844	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/1:172:77,95:77:2764:95:3416:-255.876,0,-197.224	0/1:102:57,45:57:2040:45:1607:-114.213,0,-153.167	0/1:236:132,103:132:4725:103:3680:-260.284,0,-354.305	0/0:179:179,0:179:6436:0:0:0,-53.8844,-579.266	0/0:218:218,0:218:7801:0:0:0,-65.6245,-702.117	0/0:221:220,1:220:7908:1:36:0,-62.9294,-708.142	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:111:64,47:64:2281:47:1669:-117.079,0,-172.136	0/1:88:38,50:38:1364:50:1796:-135.431,0,-96.5701	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/0:121:119,2:119:4268:2:72:0,-29.5879,-377.461	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/1:107:36,71:36:1288:71:2552:-197.72,0,-84.0134	0/0:129:129,0:129:4632:0:0:0,-38.8329,-417.041	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:202:90,112:90:3213:112:4019:-301.089,0,-228.583	0/0:274:271,2:271:9708:2:72:0,-75.6777,-866.845	0/1:57:39,18:39:1396:18:648:-41.4932,0,-108.78	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/1:254:144,110:144:5107:110:3943:-278.599,0,-383.311	0/1:111:37,74:37:1317:74:2631:-203.62,0,-85.4155	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/1:33:15,18:15:540:18:639:-47.9038,0,-39.0025	0/0:163:163,0:163:5848:0:0:0,-49.0679,-526.427	0/1:80:58,22:58:2088:22:792:-47.5233,0,-164.106	0/0:273:273,0:273:9808:0:0:0,-82.1812,-882.66	0/0:191:191,0:191:6845:0:0:0,-57.4967,-616.117	0/1:198:105,93:105:3737:93:3328:-240.134,0,-276.927	0/1:98:51,47:51:1836:47:1679:-121.894,0,-136.02	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:133:133,0:133:4746:0:0:0,-40.037,-427.296	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/0:260:260,0:260:9336:0:0:0,-78.2678,-840.201	0/0:119:118,0:118:4229:0:0:0,-35.5215,-380.428	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/1:115:63,52:63:2260:52:1851:-132.251,0,-169.044	0/0:188:188,0:188:6736:0:0:0,-56.5936,-606.314	0/1:52:26,25:26:928:25:900:-65.6087,0,-68.1257	0/1:108:54,53:54:1944:53:1893:-138.076,0,-142.666	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:38:37,1:37:1320:1:36:0,-7.84086,-115.504	0/1:116:66,50:66:2368:50:1792:-126.602,0,-178.459	0/1:94:26,68:26:932:68:2440:-191.558,0,-55.902	0/0:85:84,1:84:3005:1:36:0,-21.9893,-267.081	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.088
chr04	21131800	.	T	A	82749.8	PASS	AB=0.478024;ABP=13.0314;AC=140;AF=0.752688;AN=186;AO=3822;CIGAR=1X;DP=5087;DPB=5087;DPRA=10.1419;EPP=7797.82;EPPR=2229.19;GTI=0;LEN=1;MEANALT=1.03297;MQM=59.9103;MQMR=59.8763;NS=93;NUMALT=1;ODDS=0.452564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136066;QR=45071;RO=1261;RPL=60;RPP=7789.41;RPPR=2229.19;RPR=3762;RUN=1;SAF=1;SAP=8293.69;SAR=3821;SRF=0;SRP=2741.24;SRR=1261;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:9,8:9:324:8:279:-20.33,0,-24.3883	1/1:55:0,55:0:0:55:1948:-175.593,-16.5567,0	1/1:41:0,41:0:0:41:1461:-131.784,-12.3422,0	1/1:113:1,112:1:36:112:3995:-355.743,-30.4181,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:18:0,18:0:0:18:632:-57.2068,-5.41854,0	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	1/1:57:1,56:1:36:56:1999:-176.577,-13.5604,0	0/1:33:21,12:21:737:12:414:-27.6549,0,-56.7166	1/1:92:0,92:0:0:92:3287:-296.049,-27.6948,0	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	1/1:68:0,68:0:0:68:2399:-216.159,-20.47,0	1/1:71:0,71:0:0:71:2533:-228.22,-21.3731,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:63:33,30:33:1180:30:1076:-78.188,0,-87.5432	0/1:30:12,18:12:428:18:629:-47.9034,0,-29.8279	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:24:11,13:11:396:13:460:-34.5107,0,-28.7015	0/1:14:6,8:6:216:8:279:-21.2331,0,-15.5761	0/1:97:51,46:51:1836:46:1638:-118.507,0,-136.309	0/1:138:66,72:66:2360:72:2571:-190.097,0,-171.117	0/1:21:17,4:17:608:4:144:-6.99199,0,-48.6741	0/1:34:11,23:11:396:23:819:-63.7965,0,-25.7477	0/1:59:11,48:11:392:48:1724:-137.683,0,-17.8593	1/1:29:0,29:0:0:29:1010:-91.2073,-8.72987,0	0/1:185:111,73:111:3984:73:2606:-179.034,0,-302.728	0/1:72:43,29:43:1510:29:1031:-71.4285,0,-114.085	1/1:29:0,29:0:0:29:1029:-92.921,-8.72987,0	0/1:168:69,99:69:2463:99:3512:-265.715,0,-171.351	0/1:40:17,23:17:612:23:816:-61.7159,0,-43.3722	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3052	1/1:151:0,151:0:0:151:5368:-483.253,-45.4555,0	1/1:55:0,55:0:0:55:1936:-174.512,-16.5567,0	0/1:31:8,23:8:284:23:824:-65.1514,0,-16.5714	.:.:.:.:.:.:.:.	0/1:37:20,17:20:716:17:605:-43.6425,0,-53.6296	1/1:19:0,19:0:0:19:680:-61.5245,-5.71957,0	0/1:65:43,22:43:1521:22:780:-50.9561,0,-117.612	0/1:44:28,16:28:1004:16:563:-37.7538,0,-77.4305	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:38:23,15:23:828:15:525:-36.1389,0,-63.4004	0/1:26:14,12:14:504:12:423:-30.5783,0,-37.8713	0/1:69:25,44:25:887:44:1568:-120.64,0,-59.377	1/1:62:0,62:0:0:62:2215:-199.606,-18.6639,0	1/1:93:0,93:0:0:93:3312:-298.297,-27.9958,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:39:23,16:23:828:16:568:-39.7111,0,-63.1039	0/1:7:4,3:4:135:3:108:-7.96796,0,-10.3753	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:48:0,48:0:0:48:1720:-155.081,-14.4494,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:22:15,7:15:540:7:239:-15.2201,0,-42.3139	1/1:71:0,71:0:0:71:2544:-229.192,-21.3731,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:296:146,150:146:5244:150:5371:-394.363,0,-382.989	1/1:93:4,89:4:144:89:3156:-270.946,-14.6822,0	0/1:45:31,14:31:1108:14:504:-32.1517,0,-86.4846	1/1:33:0,33:0:0:33:1171:-105.697,-9.93399,0	0/1:74:32,42:32:1144:42:1512:-114.098,0,-80.9933	0/1:86:68,16:68:2440:16:576:-26.5286,0,-194.179	1/1:16:0,15:0:0:15:540:-48.5767,-4.51545,0	1/1:35:0,35:0:0:35:1232:-111.181,-10.5361,0	1/1:25:0,25:0:0:25:883:-79.7875,-7.52575,0	0/1:38:15,23:15:532:23:814:-62.1397,0,-36.7739	1/1:70:0,70:0:0:70:2492:-224.503,-21.0721,0	0/1:49:28,21:28:1004:21:732:-51.4479,0,-75.9254	1/1:76:0,76:0:0:76:2707:-243.866,-22.8783,0	1/1:178:0,178:0:0:178:6332:-569.971,-53.5833,0	0/1:36:25,11:25:900:11:392:-24.783,0,-70.4839	0/1:136:64,72:64:2288:72:2571:-190.699,0,-165.242	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	1/1:56:0,56:0:0:56:1965:-177.121,-16.8577,0	1/1:110:0,110:0:0:110:3927:-353.623,-33.1133,0	1/1:39:0,39:0:0:39:1396:-125.938,-11.7402,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:46:20,26:20:711:26:915:-68.8182,0,-50.4601	1/1:88:0,88:0:0:88:3127:-281.586,-26.4906,0	0/1:10:4,6:4:144:6:212:-16.4112,0,-10.3033	0/1:63:38,25:38:1332:25:867:-59.3769,0,-101.215	1/1:54:0,54:0:0:54:1927:-173.697,-16.2556,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:35:20,15:20:707:15:527:-37.2241,0,-53.4185	0/1:62:46,16:46:1644:16:576:-33.5065,0,-129.585	1/1:248:0,248:0:0:248:8819:-793.584,-74.6554,0	1/1:96:0,96:0:0:96:3414:-307.475,-28.8989,0
chr04	21131822	.	AGA	TGA	21203.1	PASS	AB=0.515089;ABP=7.794;AC=46;AF=0.247312;AN=186;AO=1263;CIGAR=1X2M;DP=5167;DPB=5167.33;DPRA=1.07033;EPP=2745.58;EPPR=8313.67;GTI=1;LEN=1;MEANALT=1.2766;MQM=59.882;MQMR=59.9101;NS=93;NUMALT=1;ODDS=0.118902;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45180;QR=135663;RO=3883;RPL=1263;RPP=2745.58;RPPR=8313.67;RPR=0;RUN=1;SAF=0;SAP=2745.58;SAR=1263;SRF=0;SRP=8434.84;SRR=3883;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:8,10:8:262:10:352:-26.2405,0,-18.1236	0/0:57:57,0:57:1968:0:0:0,-17.1587,-177.387	0/0:42:42,0:42:1462:0:0:0,-12.6433,-131.871	0/0:114:113,1:113:3951:1:32:0,-31.1181,-352.529	0/0:11:11,0:11:374:0:0:0,-3.31133,-33.9866	0/0:18:18,0:18:638:0:0:0,-5.41854,-57.7482	0/1:13:11,2:11:382:2:72:-2.92333,0,-30.7997	0/0:57:56,1:56:1966:1:36:0,-13.5604,-173.615	0/1:32:13,19:13:424:19:684:-52.2574,0,-28.8409	0/0:93:93,0:93:3263:0:0:0,-27.9958,-293.892	0/0:29:29,0:29:1010:0:0:0,-8.72987,-91.2099	0/0:69:69,0:69:2425:0:0:0,-20.7711,-218.502	0/0:71:71,0:71:2485:0:0:0,-21.3731,-223.902	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.425	0/1:63:30,33:30:1035:33:1184:-87.9034,0,-74.4905	0/1:31:19,12:19:643:12:432:-29.8893,0,-48.8478	0/0:12:12,0:12:421:0:0:0,-3.61236,-38.224	0/1:24:13,11:13:460:11:392:-28.3718,0,-34.5101	0/1:14:8,6:8:271:6:212:-15.2104,0,-20.5038	0/1:97:45,50:45:1592:50:1771:-130.705,0,-114.612	0/1:142:73,69:73:2550:69:2476:-180.347,0,-187.004	0/1:21:4,17:4:144:17:612:-49.0355,0,-6.99199	0/1:36:24,12:24:813:12:432:-28.3841,0,-62.6424	0/1:60:49,11:49:1738:11:396:-17.9209,0,-138.641	0/0:32:32,0:32:1080:0:0:0,-9.63296,-97.4976	0/1:188:76,112:76:2584:112:4009:-304.135,0,-176.211	0/1:72:28,44:28:989:44:1563:-119.197,0,-67.6487	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.461	0/1:168:100,68:100:3488:68:2436:-168.922,0,-263.561	0/1:42:24,18:24:839:18:648:-46.0086,0,-63.1834	0/0:33:33,0:33:1179:0:0:0,-9.93399,-106.418	0/1:5:4,1:4:142:1:36:-2.09312,0,-11.6241	0/1:9:3,6:3:106:6:216:-17.0812,0,-7.17983	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:242:0:0:0,-2.10721,-22.1166	1/1:4:0,4:0:0:4:144:-13.3052,-1.20412,0	0/0:151:149,0:149:5235:0:0:0,-44.8535,-470.933	0/0:55:53,0:53:1838:0:0:0,-15.9546,-165.336	0/1:31:23,8:23:805:8:288:-16.9355,0,-63.436	.:.:.:.:.:.:.:.	0/1:39:18,21:18:619:21:752:-56.2661,0,-44.2907	0/0:19:19,0:19:674:0:0:0,-5.71957,-60.9823	0/1:68:21,45:21:729:45:1586:-122.866,0,-45.7713	0/1:45:17,28:17:577:28:1008:-77.49,0,-38.7023	0/0:67:67,0:67:2369:0:0:0,-20.169,-213.464	0/1:39:15,24:15:525:24:860:-65.9771,0,-35.8396	0/1:27:13,14:13:447:14:504:-37.5703,0,-32.4292	0/1:68:42,25:42:1504:25:900:-60.7922,0,-115.126	0/0:63:63,0:63:2202:0:0:0,-18.9649,-198.441	0/0:95:95,0:95:3337:0:0:0,-28.5978,-300.548	0/0:53:53,0:53:1857:0:0:0,-15.9546,-167.4	0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1292	0/1:39:15,23:15:519:23:824:-62.6844,0,-35.2378	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:3:3,0:3:92:0:0:0,-0.90309,-8.58455	0/0:49:49,0:49:1720:0:0:0,-14.7505,-155.08	0/0:15:15,0:15:522:0:0:0,-4.51545,-47.3066	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:13:6,4:6:212:4:144:-9.94349,0,-16.0571	0/1:23:8,15:8:277:15:540:-42.0128,0,-18.3421	0/0:72:71,0:71:2506:0:0:0,-21.3731,-225.424	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:304:153,149:153:5340:149:5340:-389.5,0,-389.497	0/0:98:94,4:94:3264:4:144:0,-16.1873,-280.607	0/1:45:14,31:14:488:31:1112:-86.845,0,-30.7036	0/0:34:34,0:34:1191:0:0:0,-10.235,-107.494	0/1:77:44,32:44:1523:32:1148:-80.4404,0,-114.169	0/1:87:18,69:18:621:69:2438:-193.48,0,-30.0227	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8136	0/0:37:37,0:37:1282:0:0:0,-11.1381,-115.678	0/0:26:26,0:26:912:0:0:0,-7.82678,-82.3958	0/1:37:21,15:21:736:15:536:-37.3781,0,-55.3543	0/0:71:71,0:71:2475:0:0:0,-21.3731,-222.984	0/1:49:22,27:22:762:27:968:-72.6869,0,-54.139	0/0:79:79,0:79:2759:0:0:0,-23.7814,-248.547	0/0:183:183,0:183:6440:0:0:0,-55.0885,-579.69	0/1:36:11,25:11:388:25:892:-69.7626,0,-24.4203	0/1:134:73,60:73:2526:60:2156:-153.91,0,-187.193	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:79:79,0:79:2773:0:0:0,-23.7814,-249.812	0/0:56:56,0:56:1962:0:0:0,-16.8577,-176.845	0/0:112:112,0:112:3903:0:0:0,-33.7154,-351.466	0/0:39:39,0:39:1370:0:0:0,-11.7402,-123.595	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:46:27,19:27:925:19:680:-47.6818,0,-69.7107	0/0:93:93,0:93:3227:0:0:0,-27.9958,-290.647	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7719	0/1:63:26,37:26:903:37:1332:-101.217,0,-62.6187	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.649	0/0:8:8,0:8:277:0:0:0,-2.40824,-25.2658	0/1:34:14,20:14:502:20:720:-54.8938,0,-35.2822	0/1:62:16,46:16:566:46:1633:-128.593,0,-32.6068	0/0:252:251,0:251:8694:0:0:0,-75.5585,-782.107	0/0:97:97,0:97:3411:0:0:0,-29.1999,-307.204
chr04	21163322	.	C	A	35762.5	PASS	AB=0.540249;ABP=61.7431;AC=43;AF=0.231183;AN=186;AO=2277;CIGAR=1X;DP=8568;DPB=8568;DPRA=1.19829;EPP=4947.45;EPPR=13639.9;GTI=3;LEN=1;MEANALT=1.09434;MQM=40.8322;MQMR=59.4919;NS=93;NUMALT=1;ODDS=1.47147;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80947;QR=222622;RO=6284;RPL=2277;RPP=4947.45;RPPR=13648.5;RPR=0;RUN=1;SAF=2277;SAP=4947.45;SAR=0;SRF=6283;SRP=13639.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:16,26:16:568:26:908:-63.94,0,-38.7628	0/0:107:107,0:107:3823:0:0:0,-32.2102,-344.157	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.453	0/0:180:180,0:180:6383:0:0:0,-54.1854,-574.463	0/0:30:29,1:29:1017:1:36:0,-5.57641,-88.3796	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3659	0/1:118:33,85:33:1166:85:3022:-228.723,0,-69.7194	0/0:141:141,0:141:5022:0:0:0,-42.4452,-451.951	0/1:128:75,53:75:2650:53:1888:-121.138,0,-200.112	0/0:143:143,0:143:5089:0:0:0,-43.0473,-458.059	0/0:29:29,0:29:1013:0:0:0,-8.72987,-91.4625	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.914	0/0:55:55,0:55:1926:0:0:0,-16.5566,-173.61	0/0:65:65,0:65:2280:0:0:0,-19.5669,-205.418	0/1:48:28,20:28:995:20:711:-46.5738,0,-75.4146	0/1:42:15,27:15:540:27:957:-70.0298,0,-36.2887	0/0:78:78,0:78:2767:0:0:0,-23.4803,-248.807	0/1:38:18,20:18:635:20:708:-49.2756,0,-46.0083	0/1:21:12,9:12:408:9:324:-21.7111,0,-30.7214	0/1:151:72,79:72:2559:79:2824:-199.471,0,-185.087	0/1:164:69,95:69:2444:95:3388:-241.234,0,-170.666	0/1:89:32,57:32:1113:57:2032:-152.401,0,-73.6814	0/1:207:84,123:84:2945:123:4360:-315.824,0,-202.949	0/0:130:121,9:121:4288:9:324:0,-10.6807,-357.429	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.704	0/1:385:171,212:171:6063:212:7550:-545.764,0,-430.096	0/1:190:93,95:93:3313:95:3379:-232.953,0,-241.35	0/0:38:38,0:38:1328:0:0:0,-11.4391,-119.678	0/1:200:113,87:113:4007:87:3094:-211.481,0,-300.604	0/1:162:79,83:79:2797:83:2939:-201.383,0,-203.094	0/0:235:235,0:235:8332:0:0:0,-70.742,-749.195	0/1:8:2,6:2:63:6:208:-15.3608,0,-3.57491	0/1:13:4,9:4:144:9:320:-23.2791,0,-9.40023	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.40947	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:2,5:2:72:5:180:-13.647,0,-4.72092	0/0:218:218,0:218:7764:0:0:0,-65.6245,-698.783	0/0:138:138,0:138:4881:0:0:0,-41.5421,-439.412	0/1:49:29,20:29:1012:20:708:-46.1016,0,-76.638	.:.:.:.:.:.:.:.	0/1:108:51,57:51:1824:57:2028:-141.537,0,-131.146	0/0:29:29,0:29:1013:0:0:0,-8.72987,-91.4775	0/1:92:44,48:44:1537:48:1712:-119.931,0,-110.913	0/1:71:33,37:33:1167:37:1304:-92.0459,0,-83.9097	0/0:77:77,0:77:2712:0:0:0,-23.1793,-244.312	0/1:53:18,35:18:648:35:1236:-93.2098,0,-42.6973	0/1:110:46,64:46:1644:64:2292:-161.444,0,-115.127	0/1:205:110,95:110:3869:95:3376:-233.107,0,-286.512	0/0:111:111,0:111:3974:0:0:0,-33.4143,-357.738	0/0:178:177,1:177:6301:1:36:0,-50.0806,-563.439	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.197	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:96:49,47:49:1743:47:1688:-115.108,0,-128.218	0/1:48:24,24:24:855:24:856:-61.1629,0,-62.8107	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0789	0/0:131:131,0:131:4590:0:0:0,-39.4349,-412.738	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.283	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:23:12,11:12:419:11:392:-27.6566,0,-31.1166	0/1:60:22,38:22:792:38:1349:-97.4661,0,-53.5393	0/0:100:100,0:100:3559:0:0:0,-30.103,-320.497	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7231	0/1:337:135,201:135:4718:201:7174:-531.34,0,-322.409	0/0:196:191,5:191:6804:5:180:0,-42.9954,-596.319	0/1:83:44,39:44:1569:39:1383:-94.96,0,-116.501	0/0:92:91,1:91:3222:1:36:0,-24.1921,-286.684	0/1:166:70,95:70:2490:95:3381:-240.223,0,-174.266	0/1:89:25,64:25:900:64:2251:-167.912,0,-54.5293	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:49:48,1:48:1667:1:36:0,-11.2698,-146.404	0/0:77:77,0:77:2734:0:0:0,-23.1793,-246.245	0/1:16:7,9:7:252:9:320:-23.2542,0,-18.2077	0/0:85:84,1:84:2966:1:36:0,-22.1069,-263.476	0/1:91:38,53:38:1364:53:1873:-131.799,0,-95.6588	0/0:142:142,0:142:4999:0:0:0,-42.7463,-449.829	0/0:144:143,1:143:5099:1:36:0,-39.7526,-455.421	0/1:66:33,33:33:1176:33:1180:-80.1006,0,-86.2544	0/1:102:50,52:50:1747:52:1852:-128.235,0,-126.765	0/1:10:7,3:7:252:3:108:-6.56187,0,-20.0187	0/0:114:113,1:113:3972:1:36:0,-30.8629,-354.17	0/0:65:64,1:64:2272:1:36:0,-16.1793,-201.151	0/0:232:232,0:232:8231:0:0:0,-69.839,-740.656	0/0:94:94,0:94:3323:0:0:0,-28.2968,-299.268	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.3	0/1:80:43,37:43:1521:37:1309:-88.874,0,-113.092	0/0:136:136,0:136:4841:0:0:0,-40.9401,-434.334	0/1:40:21,19:21:752:19:676:-45.6812,0,-55.9651	0/1:61:35,26:35:1239:26:919:-60.225,0,-93.4407	0/0:71:71,0:71:2526:0:0:0,-21.3731,-227.385	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5259	0/1:45:22,23:22:768:23:816:-57.3829,0,-55.8774	0/1:60:26,34:26:919:34:1180:-85.9065,0,-64.9483	0/0:112:112,0:112:3928:0:0:0,-33.7154,-353.692	0/0:122:122,0:122:4305:0:0:0,-36.7257,-387.619
chr04	21163328	.	C	A	37552.8	PASS	AB=0.551189;ABP=99.7147;AC=43;AF=0.231183;AN=186;AO=2366;CIGAR=1X;DP=8630;DPB=8630;DPRA=1.22066;EPP=5140.71;EPPR=13585.6;GTI=3;LEN=1;MEANALT=1.03704;MQM=40.746;MQMR=59.5224;NS=93;NUMALT=1;ODDS=0.561454;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84426;QR=221162;RO=6259;RPL=2366;RPP=5140.71;RPPR=13585.6;RPR=0;RUN=1;SAF=2366;SAP=5140.71;SAR=0;SRF=6259;SRP=13594.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:15,27:15:527:27:959:-67.1338,0,-35.0387	0/0:110:110,0:110:3908:0:0:0,-33.1133,-351.808	0/0:69:69,0:69:2436:0:0:0,-20.7711,-219.387	0/0:177:177,0:177:6261:0:0:0,-53.2823,-563.424	0/0:29:28,1:28:993:1:36:0,-5.27538,-86.2234	0/0:26:26,0:26:914:0:0:0,-7.82678,-82.5645	0/1:116:33,83:33:1146:83:2957:-222.51,0,-68.5153	0/0:139:139,0:139:4882:0:0:0,-41.8432,-439.433	0/1:130:74,56:74:2615:56:2012:-130.171,0,-196.256	0/0:146:145,1:145:5156:1:36:0,-40.3547,-460.491	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9557	0/0:73:73,0:73:2581:0:0:0,-21.9752,-232.492	0/0:55:55,0:55:1930:0:0:0,-16.5566,-173.973	0/0:63:63,0:63:2220:0:0:0,-18.9649,-200.042	0/1:50:29,21:29:1036:21:747:-49.1329,0,-78.5001	0/1:42:15,27:15:540:27:972:-70.9894,0,-36.2887	0/0:79:79,0:79:2797:0:0:0,-23.7814,-251.934	0/1:40:17,23:17:604:23:824:-58.3357,0,-42.6461	0/1:23:12,11:12:420:11:396:-27.2908,0,-31.207	0/1:154:72,82:72:2540:82:2925:-207.971,0,-182.472	0/1:165:68,97:68:2412:97:3467:-247.583,0,-167.613	0/1:90:32,58:32:1129:58:2071:-155.255,0,-74.8218	0/1:214:82,132:82:2936:132:4718:-344.764,0,-200.035	0/0:130:122,8:122:4313:8:288:0,-13.9161,-362.916	0/0:41:41,0:41:1416:0:0:0,-12.3422,-127.725	0/1:391:169,222:169:6005:222:7938:-577.638,0,-422.801	0/1:190:93,97:93:3283:97:3472:-240.474,0,-238.339	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.734	0/1:200:111,89:111:3939:89:3177:-219.088,0,-294.49	0/1:169:80,89:80:2833:89:3145:-217.227,0,-204.312	0/0:234:234,0:234:8307:0:0:0,-70.441,-747.448	0/1:8:2,6:2:72:6:216:-15.957,0,-4.42848	0/1:14:5,9:5:165:9:324:-23.458,0,-10.9592	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.72502	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:2,5:2:72:5:172:-13.0794,0,-4.72092	0/0:216:216,0:216:7651:0:0:0,-65.0225,-688.623	0/0:138:138,0:138:4894:0:0:0,-41.5421,-440.578	0/1:51:29,22:29:1025:22:788:-52.0131,0,-77.2082	.:.:.:.:.:.:.:.	0/1:110:51,59:51:1796:59:2101:-147.329,0,-128.306	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4585	0/1:93:45,48:45:1574:48:1703:-118.99,0,-113.944	0/1:73:33,40:33:1132:40:1432:-101.585,0,-80.2007	0/0:78:78,0:78:2711:0:0:0,-23.4803,-244.217	0/1:56:18,38:18:639:38:1356:-102.359,0,-40.9806	0/1:117:47,70:47:1675:70:2492:-174.535,0,-115.8	0/1:212:112,97:112:3961:97:3480:-238.81,0,-293.281	0/0:110:110,0:110:3878:0:0:0,-33.1133,-349.205	0/0:174:173,1:173:6126:1:36:0,-48.8765,-547.7	0/0:93:92,1:92:3247:1:36:0,-24.3985,-288.833	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:97:48,49:48:1692:49:1737:-118.232,0,-123.345	0/1:51:25,26:25:867:26:917:-65.6531,0,-62.9795	0/0:14:14,0:14:471:0:0:0,-4.21442,-42.6636	0/0:129:129,0:129:4564:0:0:0,-38.8329,-410.344	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.44	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:23:11,12:11:388:12:432:-30.7148,0,-28.3313	0/1:58:20,38:20:701:38:1355:-98.5954,0,-45.9474	0/0:98:98,0:98:3481:0:0:0,-29.5009,-313.497	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7231	0/1:333:130,203:130:4598:203:7270:-541.203,0,-313.621	0/0:200:194,6:194:6845:6:216:0,-41.0467,-596.901	0/1:87:45,42:45:1563:42:1500:-103.716,0,-114.755	0/0:93:92,1:92:3245:1:36:0,-24.4931,-288.756	0/1:172:74,96:74:2604:96:3428:-243.08,0,-182.976	0/1:92:25,67:25:896:67:2386:-177.734,0,-53.2656	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:49:48,1:48:1684:1:36:0,-11.2698,-147.258	0/0:76:76,0:76:2689:0:0:0,-22.8783,-242.227	0/1:17:7,10:7:248:10:352:-25.7933,0,-17.5419	0/0:83:82,1:82:2866:1:36:0,-21.5048,-254.667	0/1:91:38,53:38:1330:53:1870:-131.014,0,-92.5963	0/0:140:140,0:140:4902:0:0:0,-42.1442,-441.14	0/0:144:144,0:144:5134:0:0:0,-43.3483,-462.156	0/1:67:32,35:32:1137:35:1252:-85.9476,0,-82.4514	0/1:104:51,53:51:1785:53:1887:-130.561,0,-129.579	0/1:9:6,3:6:207:3:108:-6.8629,0,-16.2576	0/0:112:111,1:111:3950:1:36:0,-30.2609,-352.186	0/0:64:62,2:62:2172:2:72:0,-12.6379,-188.924	0/0:232:232,0:232:8207:0:0:0,-69.839,-738.006	0/0:94:94,0:94:3320:0:0:0,-28.2968,-298.982	0/0:41:41,0:41:1424:0:0:0,-12.3422,-128.45	0/1:83:43,40:43:1522:40:1405:-95.8913,0,-112.279	0/0:136:136,0:136:4817:0:0:0,-40.9401,-432.593	0/1:41:21,20:21:747:20:712:-48.4719,0,-55.2121	0/1:62:35,27:35:1231:27:968:-63.7015,0,-92.4089	0/0:71:71,0:71:2520:0:0:0,-21.3731,-226.844	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:44:20,24:20:699:24:851:-60.6977,0,-49.9733	0/1:61:25,36:25:888:36:1288:-94.7498,0,-61.8601	0/0:113:113,0:113:3957:0:0:0,-34.0164,-356.21	0/0:122:122,0:122:4344:0:0:0,-36.7257,-391.125
chr04	21163401	.	C	T	31194.9	PASS	AB=0.582459;ABP=188.873;AC=45;AF=0.241935;AN=186;AO=1839;CIGAR=1X;DP=5931;DPB=5931;DPRA=1.2785;EPP=3927.16;EPPR=8864.8;GTI=6;LEN=1;MEANALT=1.04082;MQM=43.7336;MQMR=59.9709;NS=93;NUMALT=1;ODDS=0.525518;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65606;QR=145784;RO=4089;RPL=8;RPP=3927.16;RPPR=8864.8;RPR=1831;RUN=1;SAF=0;SAP=3996.35;SAR=1839;SRF=0;SRP=8882.16;SRR=4089;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:23,26:23:798:26:920:-65.0102,0,-57.3836	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/0:115:115,0:115:4104:0:0:0,-34.6184,-369.541	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:97:60,37:60:2160:37:1320:-88.3084,0,-165.467	0/0:53:49,3:49:1756:3:108:0,-6.2645,-148.575	0/1:102:44,58:44:1576:58:2068:-149.141,0,-111.427	0/0:50:50,0:50:1778:0:0:0,-15.0515,-160.301	0/0:51:51,0:51:1786:0:0:0,-15.3525,-161.019	0/0:94:94,0:94:3326:0:0:0,-28.2968,-299.56	0/0:62:62,0:62:2186:0:0:0,-18.6639,-197.005	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.103	0/1:73:37,36:37:1319:36:1267:-90.5463,0,-97.036	0/1:64:31,33:31:1085:33:1184:-85.3175,0,-78.691	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.888	0/1:24:13,11:13:468:11:392:-27.3586,0,-35.2349	0/1:31:15,16:15:540:16:576:-41.0817,0,-39.6046	0/1:66:29,37:29:1017:37:1317:-96.4628,0,-71.9718	0/1:133:63,70:63:2255:70:2500:-179.919,0,-163.106	0/1:60:7,53:7:252:53:1904:-150.934,0,-4.96716	0/1:86:36,50:36:1296:50:1784:-132.208,0,-90.5645	0/1:38:33,5:33:1176:5:180:-4.7575,0,-94.7086	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:168:70,98:70:2503:98:3504:-261.738,0,-174.949	0/1:169:60,109:60:2152:109:3873:-287.772,0,-143.073	0/0:34:34,0:34:1199:0:0:0,-10.235,-108.215	0/1:168:65,103:65:2332:103:3648:-274.545,0,-159.567	0/1:101:43,58:43:1540:58:2072:-152.449,0,-108.489	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.917	.:.:.:.:.:.:.:.	0/1:9:5,4:5:180:4:144:-10.3185,0,-13.8428	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:8:2,6:2:72:6:216:-16.7356,0,-4.42848	0/0:171:171,0:171:6045:0:0:0,-51.4761,-544.156	0/0:96:94,1:94:3372:1:36:0,-25.4328,-300.171	0/1:39:15,24:15:540:24:856:-63.1903,0,-37.194	0/1:4:1,3:1:36:3:108:-8.6547,0,-2.39415	0/1:79:23,56:23:828:56:2004:-152.549,0,-51.0627	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.371	0/1:102:39,63:39:1391:63:2252:-167.802,0,-94.7828	0/1:47:15,32:15:540:32:1144:-87.7402,0,-34.7881	0/0:36:36,0:36:1262:0:0:0,-10.8371,-113.881	0/1:91:38,53:38:1325:53:1892:-140.603,0,-92.1511	0/1:91:36,55:36:1281:55:1951:-142.345,0,-88.1975	0/1:78:29,49:29:1017:49:1756:-131.26,0,-68.3595	0/0:80:80,0:80:2832:0:0:0,-24.0824,-255.118	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.194	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:106:41,65:41:1472:65:2307:-169.621,0,-100.867	0/1:41:21,20:21:752:20:708:-51.1845,0,-55.664	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.273	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:1,5:1:36:5:180:-14.6012,0,-1.79209	0/1:62:30,32:30:1059:32:1142:-81.4364,0,-76.9566	0/0:110:109,1:109:3896:1:36:0,-29.5648,-347.286	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:119:43,76:43:1544:76:2716:-205.791,0,-103.431	0/0:78:77,1:77:2764:1:36:0,-19.9318,-245.453	0/1:50:25,25:25:896:25:896:-64.0115,0,-65.9089	0/1:38:34,4:34:1220:4:140:-1.34836,0,-98.6677	0/1:103:51,52:51:1819:52:1845:-132.759,0,-132.984	0/1:133:45,88:45:1608:88:3152:-238.174,0,-104.973	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.222	0/0:48:48,0:48:1702:0:0:0,-14.4494,-153.464	0/1:7:3,4:3:108:4:144:-10.9068,0,-7.96796	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/1:54:19,35:19:669:35:1248:-91.168,0,-44.2783	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:63:23,40:23:824:40:1432:-106.175,0,-55.5117	0/1:48:19,29:19:672:29:1036:-75.7208,0,-46.3574	0/1:13:6,7:6:216:7:252:-18.3631,0,-15.8771	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:57:56,0:56:1999:0:0:0,-16.8577,-179.823	0/0:100:100,0:100:3556:0:0:0,-30.103,-320.248	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/1:43:16,27:16:550:27:972:-73.696,0,-36.8791	0/0:113:113,0:113:4022:0:0:0,-34.0164,-362.17	0/1:19:6,13:6:216:13:464:-33.8508,0,-14.0709	0/1:61:24,37:24:860:37:1328:-97.6312,0,-59.359	0/0:68:68,0:68:2415:0:0:0,-20.47,-217.606	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.938	0/1:138:58,80:58:2080:80:2856:-209.94,0,-145.928	0/1:66:17,49:17:589:49:1740:-133.994,0,-33.4653	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.491	0/0:103:103,0:103:3683:0:0:0,-31.0061,-331.672
chr04	21163425	.	T	A	30971.5	PASS	AB=0.584713;ABP=198.736;AC=45;AF=0.241935;AN=186;AO=1843;CIGAR=1X;DP=5907;DPB=5907;DPRA=1.29255;EPP=4005.03;EPPR=8804;GTI=4;LEN=1;MEANALT=1.02;MQM=43.7499;MQMR=59.9581;NS=93;NUMALT=1;ODDS=0.803325;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65892;QR=144870;RO=4061;RPL=1843;RPP=4005.03;RPPR=8804;RPR=0;RUN=1;SAF=0;SAP=4005.03;SAR=1843;SRF=0;SRP=8821.36;SRR=4061;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:22,25:22:757:25:891:-62.9593,0,-54.2976	0/0:43:43,0:43:1521:0:0:0,-12.9443,-137.181	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:115:115,0:115:4101:0:0:0,-34.6184,-369.272	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/1:96:58,38:58:2069:38:1368:-92.7655,0,-157.58	0/0:52:48,3:48:1698:3:108:0,-5.96347,-143.356	0/1:102:46,56:46:1640:56:1996:-142.86,0,-117.184	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:50:50,0:50:1796:0:0:0,-15.0515,-160.732	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.354	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/1:74:38,36:38:1364:36:1296:-92.4421,0,-100.784	0/1:65:32,33:32:1148:33:1184:-85.0088,0,-84.0629	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.723	0/1:24:13,11:13:456:11:396:-27.6605,0,-34.1485	0/1:27:13,14:13:464:14:504:-36.2333,0,-33.9697	0/1:63:27,36:27:964:36:1277:-93.4759,0,-68.1119	0/1:132:61,71:61:2188:71:2521:-182.356,0,-157.419	0/1:61:6,55:6:216:55:1959:-155.691,0,-1.42768	0/1:87:36,51:36:1292:51:1816:-134.827,0,-90.1231	0/1:40:35,5:35:1256:5:176:-3.82959,0,-101.304	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/1:166:66,100:66:2352:100:3565:-268.237,0,-161.968	0/1:173:60,113:60:2136:113:4044:-300.882,0,-140.43	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:169:66,103:66:2343:103:3688:-277.743,0,-160.255	0/1:101:43,58:43:1529:58:2059:-151.31,0,-107.497	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.583	.:.:.:.:.:.:.:.	0/1:9:5,4:5:176:4:144:-10.3185,0,-13.4757	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:9:2,7:2:72:7:252:-19.5672,0,-4.12745	0/0:169:169,0:169:6028:0:0:0,-50.8741,-542.627	0/0:94:93,1:93:3293:1:36:0,-24.7758,-293.069	0/1:36:15,21:15:540:21:756:-55.2961,0,-38.0971	0/1:4:1,3:1:36:3:108:-8.6547,0,-2.39415	0/1:80:24,56:24:841:56:2016:-153.73,0,-51.924	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:103:41,62:41:1464:62:2224:-164.93,0,-101.049	0/1:47:16,31:16:572:31:1108:-84.4857,0,-37.665	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:87:37,50:37:1328:50:1791:-132.74,0,-93.6326	0/1:89:34,55:34:1216:55:1964:-143.966,0,-82.9549	0/1:79:30,49:30:1068:49:1760:-131.292,0,-72.6507	0/0:75:74,1:74:2635:1:36:0,-18.979,-233.799	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.554	0/0:77:77,0:77:2718:0:0:0,-23.1793,-244.862	0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1752	0/1:103:40,63:40:1428:63:2268:-166.775,0,-97.8114	0/1:43:21,22:21:740:22:788:-57.6913,0,-53.9791	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:6:1,5:1:36:5:180:-14.6012,0,-1.79209	0/1:64:31,33:31:1108:33:1175:-83.6522,0,-80.7651	0/0:111:110,1:110:3944:1:36:0,-29.8658,-351.603	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:120:44,76:44:1568:76:2707:-204.87,0,-105.288	0/0:75:74,1:74:2644:1:36:0,-19.0287,-234.658	0/1:49:24,25:24:852:25:883:-63.3236,0,-62.2499	0/1:36:32,4:32:1133:4:144:-2.29243,0,-91.4396	0/1:102:49,53:49:1752:53:1908:-138.517,0,-127.259	0/1:135:43,92:43:1536:92:3292:-249.969,0,-97.894	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:7:3,4:3:108:4:144:-10.9068,0,-7.96796	0/0:112:112,0:112:3996:0:0:0,-33.7154,-359.831	0/1:53:19,34:19:684:34:1224:-89.5583,0,-45.9357	0/0:98:98,0:98:3494:0:0:0,-29.5009,-313.894	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/1:64:23,41:23:805:41:1463:-108.587,0,-53.4949	0/1:47:18,29:18:639:29:1033:-75.8786,0,-43.6898	0/1:13:6,7:6:212:7:252:-18.3631,0,-15.5114	0/0:43:42,0:42:1500:0:0:0,-12.6433,-134.935	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:96:96,0:96:3421:0:0:0,-28.8989,-308.103	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:42:15,27:15:536:27:972:-73.997,0,-35.9316	0/0:114:113,0:113:4052:0:0:0,-34.0164,-364.506	0/1:19:6,13:6:216:13:460:-33.8664,0,-14.0709	0/1:63:26,37:26:924:37:1328:-97.0684,0,-64.5128	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.466	0/1:137:59,78:59:2097:78:2795:-204.757,0,-147.757	0/1:67:17,50:17:608:50:1761:-136.033,0,-34.883	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.799	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201
chr04	21163431	.	T	A	31035.7	PASS	AB=0.579213;ABP=176.05;AC=45;AF=0.241935;AN=186;AO=1845;CIGAR=1X;DP=6005;DPB=6005;DPRA=1.27109;EPP=4009.38;EPPR=9034.16;GTI=5;LEN=1;MEANALT=1;MQM=43.6347;MQMR=59.9548;NS=93;NUMALT=1;ODDS=0.0380062;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66085;QR=149002;RO=4159;RPL=1845;RPP=4009.38;RPPR=9034.16;RPR=0;RUN=1;SAF=0;SAP=4009.38;SAR=1845;SRF=0;SRP=9034.16;SRR=4159;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:23,26:23:824:26:924:-65.2828,0,-59.7328	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/0:117:117,0:117:4193:0:0:0,-35.2205,-377.546	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:97:60,37:60:2156:37:1328:-88.9619,0,-165.107	0/0:55:52,3:52:1856:3:108:0,-6.8107,-157.574	0/1:101:44,57:44:1580:57:2040:-146.929,0,-112.088	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.963	0/0:52:52,0:52:1849:0:0:0,-15.6536,-165.498	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:75:38,37:38:1368:37:1332:-95.3716,0,-100.844	0/1:65:32,33:32:1152:33:1179:-84.6161,0,-84.4232	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.803	0/1:24:13,11:13:468:11:396:-27.6605,0,-35.2349	0/1:29:14,15:14:504:15:540:-38.7637,0,-36.9682	0/1:65:29,36:29:1036:36:1292:-94.1246,0,-73.987	0/1:132:63,69:63:2260:69:2456:-176.593,0,-163.926	0/1:63:7,56:7:252:56:2008:-159.318,0,-4.06407	0/1:87:37,50:37:1324:50:1796:-133.02,0,-93.0015	0/1:40:35,5:35:1252:5:180:-4.15544,0,-100.944	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:173:71,102:71:2548:102:3644:-272.714,0,-177.492	0/1:174:61,113:61:2192:113:4052:-301.263,0,-145.166	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:165:65,100:65:2336:100:3584:-269.749,0,-160.829	0/1:104:46,58:46:1614:58:2072:-151.476,0,-114.238	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	.:.:.:.:.:.:.:.	0/1:9:5,4:5:180:4:144:-10.3185,0,-13.8428	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:10:3,7:3:108:7:252:-19.2661,0,-7.06487	0/0:172:172,0:172:6168:0:0:0,-51.7772,-555.217	0/0:99:98,1:98:3509:1:36:0,-26.281,-312.497	0/1:38:14,24:14:500:24:864:-64.0919,0,-33.897	0/1:4:1,3:1:36:3:108:-8.6547,0,-2.39415	0/1:80:23,57:23:820:57:2052:-156.314,0,-50.0401	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:99:41,58:41:1472:58:2076:-152.831,0,-102.974	0/1:48:17,31:17:612:31:1116:-84.8081,0,-40.9636	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:90:38,52:38:1360:52:1872:-139.037,0,-95.6079	0/1:90:36,54:36:1288:54:1928:-140.623,0,-89.1309	0/1:79:30,49:30:1057:49:1756:-130.959,0,-71.6576	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.194	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:105:41,64:41:1468:64:2292:-168.407,0,-100.808	0/1:43:21,22:21:752:22:788:-57.6913,0,-55.062	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.092	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:1,5:1:36:5:180:-14.6012,0,-1.79209	0/1:64:31,33:31:1116:33:1184:-84.4033,0,-81.4858	0/0:112:111,1:111:3988:1:36:0,-30.1668,-355.56	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:120:44,76:44:1580:76:2728:-206.588,0,-106.368	0/0:78:77,1:77:2768:1:36:0,-19.9318,-245.812	0/1:49:25,24:25:896:24:860:-61.0818,0,-66.2099	0/1:38:34,4:34:1220:4:144:-1.69037,0,-98.6677	0/1:104:51,53:51:1824:53:1904:-137.582,0,-133.134	0/1:135:45,90:45:1620:90:3228:-244.208,0,-105.451	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.502	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/1:7:3,4:3:108:4:144:-10.9068,0,-7.96796	0/0:119:119,0:119:4253:0:0:0,-35.8226,-382.947	0/1:54:19,35:19:684:35:1260:-92.0676,0,-45.6347	0/0:99:99,0:99:3539:0:0:0,-29.802,-317.942	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:65:24,41:24:864:41:1464:-108.406,0,-58.5089	0/1:48:19,29:19:661:29:1030:-75.4664,0,-45.3622	0/1:13:6,7:6:212:7:252:-18.3631,0,-15.5114	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.887	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:43:16,27:16:576:27:968:-73.3618,0,-39.2307	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/1:19:6,13:6:216:13:459:-33.4283,0,-14.0709	0/1:64:26,38:26:936:38:1368:-100.211,0,-65.2935	0/0:72:71,0:71:2548:0:0:0,-21.3731,-229.211	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.466	0/1:142:61,81:61:2196:81:2878:-210.732,0,-155.159	0/1:66:17,49:17:612:49:1747:-134.293,0,-35.5455	0/0:51:51,0:51:1802:0:0:0,-15.3525,-162.458	0/0:104:104,0:104:3740:0:0:0,-31.3071,-336.799
chr04	21241144	.	TTGT	TTGG,ATGG	130589	PASS	AB=0.483615,0.510617;ABP=10.0552,5.96131;AC=141,44;AF=0.758065,0.236559;AN=186;AO=4593,1547;CIGAR=3M1X,1X2M1X;DP=6183;DPB=6183;DPRA=0,1.14173;EPP=9976.58,3362.28;EPPR=20.3821;GTI=2;LEN=1,4;MEANALT=1.87097,2.34694;MQM=59.9743,59.7033;MQMR=60;NS=93;NUMALT=2;ODDS=1.57939;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=164074,53639;QR=262;RO=8;RPL=4593,1547;RPP=9976.58,3362.28;RPPR=20.3821;RPR=0,0;RUN=1,1;SAF=0,0;SAP=9976.58,3362.28;SAR=4593,1547;SRF=0;SRP=20.3821;SRR=8;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:23:1,16,6:1:25:16,6:568,207:-60.9488,-14.962,-12.0808,-44.4366,0,-44.5731	1/1:41:1,40,0:1:36:40,0:1436,0:-125.939,-8.74396,0,-126.24,-12.0412,-129.178	1/1:99:0,98,0:0:0:98,0:3496,0:-314.492,-29.5009,0,-314.492,-29.5009,-314.492	1/1:129:0,126,3:0:0:126,3:4484,93:-403.372,-37.9298,0,-395.909,-30.1548,-395.005	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/1:28:0,27,0:0:0:27,0:952,0:-85.7126,-8.12781,0,-85.7126,-8.12781,-85.7126	1/2:32:0,12,20:0:0:12,20:428,677:-90.1216,-55.2249,-51.6125,-35.2464,0,-29.2258	1/1:119:1,116,2:1:36:116,2:4136,65:-368.781,-31.9704,0,-363.836,-29.6967,-366.171	1/2:65:0,31,33:0:0:31,33:1100,1150:-183.136,-93.5098,-84.1779,-89.6187,0,-79.6847	1/1:66:0,66,0:0:0:66,0:2347,0:-211.489,-19.868,0,-211.489,-19.868,-211.489	1/1:56:0,54,0:0:0:54,0:1898,0:-170.843,-16.2556,0,-170.843,-16.2556,-170.843	1/1:126:1,125,0:1:36:125,0:4459,0:-397.88,-34.3315,0,-398.181,-37.6288,-401.118	1/1:70:0,69,0:0:0:69,0:2476,0:-222.734,-20.7711,0,-222.734,-20.7711,-222.734	1/1:44:0,44,0:0:0:44,0:1571,0:-141.681,-13.2453,0,-141.681,-13.2453,-141.681	1/2:58:1,33,24:1:36:33,24:1171,831:-159.69,-64.5776,-57.5816,-92.4654,0,-88.1783	1/2:59:0,32,27:0:0:32,27:1152,943:-171.054,-77.0512,-67.4183,-94.3572,0,-86.2294	1/1:40:0,40,0:0:0:40,0:1440,0:-129.898,-12.0412,0,-129.898,-12.0412,-129.898	1/2:21:0,10,11:0:0:10,11:360,387:-61.2334,-31.8554,-28.8451,-29.734,0,-26.4227	1/2:50:0,26,24:0:0:26,24:936,831:-144.262,-67.8815,-60.0548,-76.7327,0,-69.508	1/2:217:0,107,109:0:0:107,109:3827,3715:-613.507,-301.441,-269.23,-312.115,0,-279.303	1/2:118:0,58,60:0:0:58,60:2068,2084:-338.346,-169.767,-152.307,-168.931,0,-150.869	1/2:31:0,8,23:0:0:8,23:288,803:-89.1668,-65.6647,-63.2565,-23.8592,0,-16.9355	1/2:56:0,41,15:0:0:41,15:1472,512:-161.976,-41.8884,-29.5462,-120.434,0,-115.918	1/2:20:0,18,2:0:0:18,2:640,70:-58.2056,-6.04527,-0.626727,-52.5108,0,-51.9087	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/2:124:0,73,51:0:0:73,51:2599,1773:-356.328,-144.5,-122.525,-212.179,0,-196.826	1/2:92:0,48,41:0:0:48,41:1711,1428:-255.606,-116.13,-101.681,-139.529,0,-127.186	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	1/2:97:0,36,60:0:0:36,60:1288,2104:-276.24,-171.208,-160.371,-105.027,0,-86.9649	1/2:55:0,27,28:0:0:27,28:968,970:-158.132,-79.1753,-71.0475,-79.3096,0,-70.8807	1/1:65:0,64,1:0:0:64,1:2292,36:-206.182,-19.2659,0,-203.244,-15.9687,-202.943	1/2:2:0,1,1:0:0:1,1:36,24:-5.0962,-2.09886,-1.79783,-3.29724,0,-2.99621	1/2:11:0,7,4:0:0:7,4:252,143:-32.5808,-12.0173,-9.91011,-20.9217,0,-19.7176	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:16:0,8,8:0:0:8,8:280,278:-45.7314,-22.9489,-20.5407,-23.1311,0,-20.7228	1/1:173:0,171,0:0:0:171,0:6092,0:-548.033,-51.4761,0,-548.033,-51.4761,-548.033	1/1:82:1,80,0:1:36:80,0:2864,0:-254.453,-21.0901,0,-254.754,-24.0824,-257.691	1/2:46:0,19,27:0:0:19,27:684,939:-132.496,-76.6804,-70.9608,-56.1708,0,-48.0429	.:.:.:.:.:.:.:.	1/2:92:0,54,37:0:0:54,37:1940,1290:-263.099,-104.831,-88.5757,-158.261,0,-147.123	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/2:81:0,30,50:0:0:30,50:1072,1718:-226.755,-139.345,-130.314,-87.5081,0,-72.4566	1/2:72:0,29,42:0:0:29,42:1036,1454:-202.737,-118.264,-109.534,-84.5899,0,-71.9466	1/1:57:0,57,0:0:0:57,0:2039,0:-183.781,-17.1587,0,-183.781,-17.1587,-183.781	1/2:108:0,56,51:0:0:56,51:2008,1796:-309.986,-146.207,-129.35,-163.774,0,-148.422	1/2:79:0,36,43:0:0:36,43:1284,1488:-225.922,-121.247,-110.41,-105.026,0,-92.082	1/2:97:0,53,44:0:0:53,44:1896,1533:-279.527,-124.916,-108.962,-154.963,0,-141.718	1/1:63:0,63,0:0:0:63,0:2251,0:-202.853,-18.9649,0,-202.853,-18.9649,-202.853	1/1:91:0,91,0:0:0:91,0:3268,0:-294.34,-27.3937,0,-294.34,-27.3937,-294.34	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	0/1:7:1,6,0:1:36:6,0:216,0:-17.6833,0,-1.49106,-17.9843,-3.29724,-20.9217	1/2:109:0,55,54:0:0:55,54:1959,1879:-312.761,-153.096,-136.54,-160.017,0,-143.761	1/2:65:0,38,27:0:0:38,27:1356,949:-188.145,-77.5969,-66.1578,-110.901,0,-102.774	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:88:0,88,0:0:0:88,0:3128,0:-281.748,-26.4906,0,-281.748,-26.4906,-281.748	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.4082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chr04	21323105	.	A	G	72975	PASS	AB=0.492515;ABP=7.49647;AC=99;AF=0.526596;AN=188;AO=4571;CIGAR=1X;DP=9250;DPB=9250;DPRA=0;EPP=9894.1;EPPR=10143.8;GTI=0;LEN=1;MEANALT=1.05319;MQM=45.0545;MQMR=59.537;NS=94;NUMALT=1;ODDS=0.954498;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162563;QR=167217;RO=4674;RPL=4;RPP=9894.1;RPPR=10143.8;RPR=4567;RUN=1;SAF=0;SAP=9928.81;SAR=4571;SRF=0;SRP=10152.5;SRR=4674;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:16,37:16:572:37:1313:-99.8387,0,-35.8588	0/1:52:22,30:22:784:30:1068:-78.3372,0,-54.5728	0/1:125:60,65:60:2160:65:2324:-168.301,0,-156.925	0/1:189:115,73:115:4120:73:2599:-172.896,0,-313.787	0/1:94:55,39:55:1980:39:1358:-91.7811,0,-150.149	0/1:51:23,28:23:820:28:1004:-74.2735,0,-58.7131	0/1:160:126,34:126:4520:34:1216:-60.4237,0,-357.407	0/1:152:67,83:67:2396:83:2952:-215.813,0,-168.526	0/1:58:10,48:10:356:48:1709:-133.615,0,-14.9215	0/1:86:44,42:44:1572:42:1504:-105.15,0,-115.769	0/1:57:30,27:30:1068:27:936:-66.3167,0,-79.1604	0/1:111:49,62:49:1749:62:2180:-160.07,0,-124.249	0/1:84:45,39:45:1612:39:1391:-96.6357,0,-120.055	0/1:49:23,26:23:824:26:932:-66.7802,0,-59.7044	0/1:85:42,43:42:1508:43:1540:-109.428,0,-110.427	0/1:50:25,25:25:896:25:887:-63.0497,0,-65.8804	0/1:59:45,14:45:1612:14:491:-26.2342,0,-125.746	0/1:52:38,14:38:1347:14:500:-28.2893,0,-105.876	0/1:39:20,19:20:716:19:671:-47.7788,0,-53.0275	0/1:131:60,71:60:2152:71:2519:-183.561,0,-154.484	0/1:167:77,90:77:2745:90:3202:-233.736,0,-196.791	0/1:159:81,78:81:2908:78:2780:-199.86,0,-214.006	0/1:130:81,49:81:2892:49:1726:-113.564,0,-221.354	0/1:52:40,12:40:1436:12:428:-22.8512,0,-113.884	0/1:97:70,27:70:2493:27:968:-56.6553,0,-194.71	0/1:365:204,161:204:7262:161:5738:-392.261,0,-543.593	0/1:245:65,180:65:2336:180:6407:-484.266,0,-134.912	0/1:48:26,22:26:936:22:777:-55.0984,0,-70.0816	0/1:355:217,138:217:7772:138:4920:-328.27,0,-592.407	0/1:116:85,31:85:3005:31:1091:-60.4632,0,-235.664	0/1:150:91,59:91:3260:59:2111:-138.981,0,-248.466	0/1:15:6,9:6:216:9:305:-22.5682,0,-15.2751	1/1:12:1,11:1:36:11:392:-30.4191,-0.0140851,0	1/1:6:0,6:0:0:6:216:-19.2648,-1.80618,0	0/1:14:9,5:9:324:5:180:-11.9148,0,-25.2914	0/1:13:2,11:2:68:11:387:-30.027,0,-2.54432	0/1:302:149,153:149:5335:153:5459:-386.574,0,-389.315	0/1:116:56,60:56:1987:60:2148:-156.496,0,-144.094	0/1:42:25,17:25:900:17:603:-40.0861,0,-68.6778	1/1:2:0,2:0:0:2:72:-6.74497,-0.60206,0	0/1:143:104,39:104:3709:39:1396:-80.907,0,-287.624	0/1:30:14,16:14:500:16:576:-42.3885,0,-36.3053	0/1:172:105,67:105:3764:67:2364:-157.069,0,-287.097	0/1:83:48,35:48:1720:35:1241:-84.5285,0,-130.043	0/1:54:26,28:26:918:28:992:-70.0923,0,-66.6796	0/1:123:44,79:44:1576:79:2832:-209.833,0,-105.076	0/1:158:86,71:86:3050:71:2530:-172.499,0,-226.98	0/1:172:105,67:105:3756:67:2357:-157.368,0,-286.423	0/1:139:75,64:75:2676:64:2288:-157.169,0,-199.158	0/1:74:41,33:41:1464:33:1180:-81.7938,0,-109.695	0/1:146:70,76:70:2520:76:2704:-190.712,0,-183.072	0/1:5:1,4:1:36:4:144:-11.4548,0,-2.09312	0/1:116:51,65:51:1836:65:2324:-170.584,0,-130.601	0/1:59:37,22:37:1324:22:792:-52.3456,0,-101.673	0/1:2:1,1:1:36:1:36:-2.90064,0,-2.99621	0/1:174:67,107:67:2388:107:3832:-283.113,0,-162.742	0/1:52:19,33:19:684:33:1180:-88.2265,0,-46.2083	1/1:4:0,4:0:0:4:140:-12.6417,-1.20412,0	0/1:18:12,6:12:432:6:216:-13.933,0,-33.7455	0/1:70:37,33:37:1328:33:1180:-82.6869,0,-98.7217	0/1:187:100,87:100:3592:87:3086:-218.382,0,-267.024	1/1:8:0,8:0:0:8:288:-25.5697,-2.40824,0	0/1:218:120,97:120:4296:97:3452:-240.657,0,-321.066	0/1:154:59,95:59:2107:95:3391:-250.042,0,-143.483	0/1:57:29,28:29:1025:28:979:-68.5249,0,-75.402	0/1:73:53,20:53:1904:20:716:-41.1728,0,-149.606	0/1:186:118,68:118:4224:68:2416:-156.636,0,-324.309	0/1:122:39,83:39:1404:83:2954:-221.714,0,-89.9052	0/1:31:15,16:15:540:16:575:-41.4394,0,-39.5761	0/1:67:37,30:37:1324:30:1076:-74.4235,0,-99.2647	0/1:90:61,29:61:2184:29:1040:-63.7401,0,-169.705	0/1:23:11,12:11:396:12:424:-30.6307,0,-29.0591	0/1:116:40,76:40:1420:76:2695:-203.252,0,-92.9113	0/1:67:20,47:20:720:47:1675:-126.362,0,-44.9313	0/1:229:80,149:80:2856:149:5275:-393.085,0,-188.342	0/1:108:53,55:53:1885:55:1964:-141.473,0,-137.415	0/1:136:49,87:49:1760:87:3109:-231.462,0,-117.744	0/1:63:20,43:20:716:43:1539:-116.236,0,-45.7744	0/1:13:2,11:2:68:11:396:-31.4575,0,-2.54432	0/1:72:22,50:22:788:50:1788:-136.265,0,-49.5706	0/1:130:67,63:67:2384:63:2239:-155.963,0,-175.682	0/1:188:109,79:109:3916:79:2815:-191.925,0,-295.924	0/1:85:39,46:39:1391:46:1622:-116.988,0,-99.8723	0/1:65:31,34:31:1116:34:1189:-86.4734,0,-81.1847	0/1:58:31,27:31:1112:27:959:-66.615,0,-82.9316	0/1:107:44,63:44:1580:63:2230:-165.195,0,-110.281	0/1:43:17,26:17:608:26:932:-68.7155,0,-42.1077	0/1:87:30,57:30:1076:57:2040:-153.836,0,-70.9348	0/1:84:44,40:44:1584:40:1394:-95.9089,0,-117.564	0/1:18:7,11:7:252:11:392:-29.5042,0,-17.6104	0/1:85:29,56:29:1044:56:1958:-147.978,0,-68.6588	0/1:75:16,59:16:576:59:2103:-164.864,0,-29.5407	0/1:112:65,47:65:2336:47:1672:-113.247,0,-176.784	0/1:156:74,82:74:2641:82:2872:-203.672,0,-190.802
chr04	21323120	.	AATT	AACT,TATC	183503	PASS	AB=0.487446,0.509906;ABP=15.9322,11.055;AC=99,89;AF=0.526596,0.473404;AN=188;AO=4632,4814;CIGAR=2M1X1M,1X2M1X;DP=9471;DPB=9471;DPRA=0,21.0022;EPP=10061.3,10456.5;EPPR=0;GTI=0;LEN=1,4;MEANALT=2.2234,2.27778;MQM=45.0846,59.5345;MQMR=0;NS=94;NUMALT=2;ODDS=0.00953103;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=164969,170426;QR=0;RO=0;RPL=4632,4814;RPP=10061.3,10456.5;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10061.3,10456.5;SAR=4632,4814;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:55:0,37,18:0:0:37,18:1328,635:-157.603,-52.0306,-40.8925,-105.924,0,-100.506	1/2:54:0,31,23:0:0:31,23:1108,808:-153.231,-65.4571,-56.1251,-88.1221,0,-81.1984	1/2:127:0,65,62:0:0:65,62:2317,2212:-365.93,-180.568,-161.001,-185.715,0,-167.051	1/2:194:0,77,116:0:0:77,116:2760,4094:-553.597,-333.202,-310.023,-220.39,0,-185.471	1/2:98:0,40,58:0:0:40,58:1410,2034:-278.405,-165.849,-153.807,-112.904,0,-95.4442	1/2:52:0,29,23:0:0:29,23:1036,823:-150.827,-67.413,-58.6831,-83.7698,0,-76.8461	1/2:167:0,35,132:0:0:35,132:1248,4613:-475.202,-374.636,-364.1,-100.917,0,-61.1814	1/2:155:0,84,71:0:0:84,71:2960,2484:-437.565,-200.695,-175.408,-237.218,0,-215.844	1/2:59:0,49,10:0:0:49,10:1763,359:-170.376,-29.6433,-14.8929,-141.091,0,-138.081	1/2:87:0,42,44:0:0:42,44:1481,1556:-244.11,-126.719,-114.075,-117.42,0,-104.175	1/2:58:0,28,30:0:0:28,30:985,1066:-166.039,-87.1071,-78.6783,-79.2825,0,-70.2516	1/2:112:0,63,48:0:0:63,48:2256,1701:-319.509,-138.584,-119.619,-180.965,0,-166.515	1/2:86:0,39,46:0:0:39,46:1400,1634:-244.082,-133.173,-121.433,-110.948,0,-97.1002	1/2:50:0,27,23:0:0:27,23:963,809:-142.23,-66.1882,-58.0604,-76.3913,0,-69.4676	1/2:88:0,44,44:0:0:44,44:1572,1569:-252.518,-128.257,-115.011,-124.613,0,-111.367	1/2:49:0,23,25:0:0:23,25:828,897:-138.777,-73.1682,-66.2445,-65.6063,0,-58.0805	1/2:60:0,15,45:0:0:15,45:540,1600:-172.424,-128.886,-124.37,-43.8929,0,-30.3466	1/2:53:0,13,39:0:0:13,39:468,1381:-149.878,-112.568,-108.654,-37.3777,0,-25.6375	1/2:38:0,18,20:0:0:18,20:641,711:-109.482,-58.2962,-52.8777,-51.5376,0,-45.517	1/2:135:0,70,63:0:0:70,63:2494,2244:-383.178,-182.94,-161.868,-200.272,0,-181.307	1/2:170:0,91,78:0:0:91,78:3237,2731:-481.607,-222.063,-194.669,-259.633,0,-236.153	1/2:164:0,79,83:0:0:79,83:2810,2965:-467.97,-241.684,-217.902,-226.283,0,-201.297	1/2:131:0,49,82:0:0:49,82:1740,2926:-377.843,-238.863,-224.113,-139.332,0,-114.647	1/2:53:0,12,41:0:0:12,41:432,1454:-153.712,-118.814,-115.201,-35.2543,0,-22.912	1/2:99:0,26,73:0:0:26,73:936,2589:-285.418,-210.584,-202.757,-75.187,0,-53.2118	1/2:386:0,168,218:0:0:168,218:5997,7687:-1099.88,-626.053,-575.48,-474.175,0,-408.551	1/2:249:0,183,66:0:0:183,66:6501,2337:-701.807,-188.978,-133.889,-513.178,0,-493.31	1/2:49:0,22,27:0:0:22,27:792,969:-143.294,-79.3715,-72.7489,-64.2801,0,-56.1523	1/2:365:0,139,225:0:0:139,225:4961,7942:-1043.69,-646.619,-604.776,-397.119,0,-329.388	1/2:123:0,34,89:0:0:34,89:1208,3161:-353.333,-257.848,-247.613,-95.8328,0,-69.0411	1/2:158:0,61,97:0:0:61,97:2183,3397:-449.148,-276.75,-258.387,-172.747,0,-143.547	1/2:16:0,10,6:0:0:10,6:360,210:-45.9065,-17.4359,-14.4256,-28.8204,0,-27.0142	1/1:12:0,11,1:0:0:11,1:388,36:-33.7566,-3.31133,0,-30.8176,-0.0140851,-30.5165	1/1:6:0,6,0:0:0:6,0:216,0:-19.2648,-1.80618,0,-19.2648,-1.80618,-19.2648	1/2:15:0,5,10:0:0:5,10:180,352:-43.2809,-29.0078,-27.5027,-14.6241,0,-11.6138	1/2:13:0,10,2:0:0:10,2:356,65:-33.4788,-5.25443,-2.24413,-28.2357,0,-27.6336	1/2:309:0,154,155:0:0:154,155:5502,5512:-884.719,-449.499,-403.14,-435.571,0,-388.912	1/2:116:0,60,56:0:0:60,56:2156,1980:-335.166,-161.546,-143.484,-173.974,0,-157.117	1/2:44:0,18,25:0:0:18,25:636,884:-122.179,-72.0695,-66.651,-50.172,0,-42.6463	1/1:2:0,2,0:0:0:2,0:72,0:-6.74497,-0.60206,0,-6.74497,-0.60206,-6.74497	1/2:145:0,39,106:0:0:39,106:1385,3766:-414.942,-304.086,-292.346,-111.207,0,-79.2973	1/2:31:0,16,15:0:0:16,15:576,539:-90.5767,-44.3307,-39.5143,-46.6029,0,-42.0874	1/2:173:0,65,107:0:0:65,107:2316,3792:-493.784,-308.973,-289.406,-184.935,0,-152.725	1/2:84:0,36,48:0:0:36,48:1291,1708:-242.545,-139.522,-128.685,-103.377,0,-88.9274	1/2:55:0,28,27:0:0:28,27:992,957:-156.344,-78.317,-69.8881,-78.3762,0,-70.2484	1/2:125:0,79,46:0:0:79,46:2818,1620:-354.744,-132.212,-108.431,-222.881,0,-209.034	1/2:168:0,75,93:0:0:75,93:2671,3281:-478.088,-267.417,-244.84,-211.02,0,-183.024	1/2:178:0,66,110:0:0:66,110:2353,3896:-506.167,-317.371,-297.503,-188.856,0,-155.742	1/2:139:0,64,75:0:0:64,75:2217,2628:-388.924,-214.111,-194.845,-175.156,0,-152.579	1/2:74:0,33,41:0:0:33,41:1163,1459:-211.525,-119.179,-109.245,-92.6947,0,-80.3525	1/2:149:0,78,71:0:0:78,71:2751,2491:-419.598,-203.054,-179.573,-216.891,0,-195.518	1/2:4:0,3,1:0:0:3,1:108,36:-11.8443,-3.29724,-2.39415,-8.90447,0,-8.60344	1/2:117:0,66,51:0:0:66,51:2326,1819:-334.281,-148.639,-128.771,-185.994,0,-170.641	1/2:62:0,25,37:0:0:25,37:885,1328:-179.173,-108.656,-101.13,-70.8686,0,-59.7305	1/2:2:0,1,1:0:0:1,1:36,36:-6.14387,-3.29724,-2.99621,-3.20167,0,-2.90064	1/2:175:0,106,68: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chr04	21323128	.	A	G	74099	PASS	AB=0.492089;ABP=8.09518;AC=99;AF=0.526596;AN=188;AO=4634;CIGAR=1X;DP=9386;DPB=9386;DPRA=0;EPP=10065.6;EPPR=10311;GTI=0;LEN=1;MEANALT=1.05319;MQM=45.0475;MQMR=59.5483;NS=94;NUMALT=1;ODDS=0.778447;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165358;QR=169713;RO=4747;RPL=4634;RPP=10065.6;RPPR=10311;RPR=0;RUN=1;SAF=0;SAP=10065.6;SAR=4634;SRF=0;SRP=10311;SRR=4747;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:16,37:16:572:37:1297:-98.4983,0,-35.8588	0/1:53:22,30:22:773:30:1076:-78.7492,0,-53.9962	0/1:125:61,64:61:2169:64:2300:-166.128,0,-157.761	0/1:190:115,75:115:4104:75:2678:-179.639,0,-312.126	0/1:97:58,39:58:2072:39:1374:-92.4675,0,-157.539	0/1:50:22,28:22:784:28:996:-73.9037,0,-55.7755	0/1:167:132,35:132:4708:35:1248:-61.1814,0,-372.204	0/1:154:68,85:68:2440:85:3044:-223.125,0,-171.636	0/1:57:10,47:10:360:47:1675:-130.904,0,-15.5856	0/1:86:45,41:45:1616:41:1459:-101.323,0,-119.728	0/1:56:29,27:29:1036:27:968:-69.3652,0,-76.5832	0/1:110:47,63:47:1679:63:2228:-164.132,0,-118.255	0/1:88:46,42:46:1652:42:1508:-105.626,0,-122.449	0/1:50:23,27:23:815:27:972:-69.9427,0,-58.6156	0/1:88:44,44:44:1576:44:1584:-111.891,0,-115.641	0/1:51:26,25:26:932:25:887:-62.7487,0,-68.8179	0/1:60:45,15:45:1601:15:536:-29.9854,0,-124.453	0/1:51:37,14:37:1315:14:504:-28.9024,0,-103.298	0/1:39:20,19:20:712:19:680:-48.5668,0,-52.6665	0/1:133:64,69:64:2288:69:2468:-178.357,0,-166.116	0/1:167:77,90:77:2752:90:3205:-233.871,0,-197.423	0/1:165:85,80:85:3048:80:2864:-205.352,0,-224.794	0/1:128:79,49:79:2827:49:1748:-115.875,0,-216.108	0/1:52:40,12:40:1436:12:432:-23.2131,0,-113.884	0/1:99:72,27:72:2568:27:960:-55.3823,0,-200.856	0/1:384:216,168:216:7713:168:5988:-408.19,0,-578.382	0/1:247:66,181:66:2364:181:6422:-485.76,0,-136.83	0/1:49:27,22:27:968:22:792:-56.1523,0,-72.6585	0/1:363:223,140:223:7980:140:5016:-334.274,0,-608.722	0/1:121:87,34:87:3116:34:1193:-67.9893,0,-244.157	0/1:153:93,60:93:3324:60:2156:-141.966,0,-253.321	0/1:16:6,10:6:216:10:341:-25.4216,0,-14.974	1/1:12:1,11:1:36:11:396:-30.7319,-0.0140851,0	1/1:6:0,6:0:0:6:216:-19.2648,-1.80618,0	0/1:15:10,5:10:360:5:180:-11.6138,0,-28.2289	0/1:13:2,11:2:64:11:381:-29.4907,0,-2.1653	0/1:304:151,153:151:5395:153:5472:-386.844,0,-394.112	0/1:115:54,61:54:1940:61:2192:-160.619,0,-140.176	0/1:43:25,18:25:896:18:644:-42.6714,0,-68.0161	1/1:2:0,2:0:0:2:72:-6.74497,-0.60206,0	0/1:146:106,40:106:3796:40:1432:-83.1926,0,-294.194	0/1:31:15,16:15:540:16:576:-42.0874,0,-39.6046	0/1:176:107,69:107:3824:69:2440:-162.525,0,-291.291	0/1:83:47,36:47:1684:36:1284:-88.5505,0,-126.805	0/1:55:27,28:27:968:28:1008:-70.6765,0,-70.8807	0/1:125:46,79:46:1636:79:2809:-207.327,0,-109.871	0/1:162:89,73:89:3165:73:2616:-179.194,0,-236.19	0/1:177:109,68:109:3868:68:2424:-161.765,0,-294.965	0/1:139:74,65:74:2648:65:2332:-160.942,0,-196.667	0/1:74:41,33:41:1472:33:1188:-82.4642,0,-110.415	0/1:149:71,78:71:2536:78:2792:-197.099,0,-183.61	0/1:5:1,4:1:36:4:144:-11.4548,0,-2.09312	0/1:115:49,66:49:1752:66:2334:-172.068,0,-123.346	0/1:61:37,24:37:1324:24:860:-57.7901,0,-101.071	0/1:2:1,1:1:36:1:36:-2.90064,0,-2.99621	0/1:173:66,107:66:2352:107:3837:-284.027,0,-159.793	0/1:53:21,32:21:756:32:1143:-84.6551,0,-52.3842	1/1:4:0,4:0:0:4:144:-12.96,-1.20412,0	0/1:17:11,6:11:396:6:216:-14.234,0,-30.808	0/1:72:39,33:39:1380:33:1176:-81.7742,0,-102.796	0/1:191:103,88:103:3667:88:3135:-221.461,0,-272.558	1/1:8:0,8:0:0:8:288:-25.5697,-2.40824,0	0/1:223:123,100:123:4404:100:3576:-250.017,0,-329.318	0/1:155:57,98:57:2028:98:3504:-258.089,0,-136.105	0/1:59:31,27:31:1112:27:938:-64.3113,0,-82.6144	0/1:75:55,20:55:1972:20:720:-40.8821,0,-155.121	0/1:191:120,71:120:4284:71:2524:-164.513,0,-328.202	0/1:125:40,85:40:1436:85:3039:-227.751,0,-91.8521	0/1:32:16,16:16:572:16:572:-40.834,0,-42.152	0/1:67:38,29:38:1353:29:1029:-70.3115,0,-101.843	0/1:94:62,32:62:2232:32:1131:-70.9018,0,-172.818	0/1:22:10,12:10:356:12:432:-31.5568,0,-25.7586	0/1:119:40,79:40:1428:79:2840:-214.736,0,-92.7063	0/1:67:20,47:20:720:47:1680:-127.072,0,-44.9313	0/1:234:82,152:82:2940:152:5415:-403.519,0,-194.393	0/1:109:52,57:52:1868:57:2028:-146.365,0,-135.587	0/1:135:49,86:49:1756:86:3054:-227.301,0,-117.685	0/1:64:21,43:21:737:43:1536:-115.74,0,-47.3562	0/1:13:2,11:2:72:11:392:-31.1447,0,-2.92333	0/1:72:21,51:21:756:51:1823:-139.338,0,-46.6931	0/1:129:64,65:64:2300:65:2295:-161.262,0,-168.428	0/1:189:112,76:112:4012:76:2720:-183.17,0,-304.183	0/1:88:40,48:40:1427:48:1716:-123.864,0,-102.208	0/1:66:32,34:32:1148:34:1205:-86.8885,0,-83.7619	0/1:57:31,26:31:1112:26:924:-63.8792,0,-83.2326	0/1:106:43,62:43:1535:62:2205:-162.975,0,-106.623	0/1:45:17,28:17:604:28:1008:-74.7294,0,-41.1443	0/1:87:28,59:28:1008:59:2116:-160.363,0,-64.8183	0/1:86:44,42:44:1572:42:1508:-103.894,0,-115.883	0/1:18:7,11:7:252:11:396:-29.9523,0,-17.6104	0/1:84:30,54:30:1080:54:1935:-145.965,0,-72.1983	0/1:75:16,59:16:567:59:2089:-163.727,0,-28.7265	0/1:112:65,47:65:2336:47:1688:-114.489,0,-176.784	0/1:158:75,83:75:2691:83:2954:-209.342,0,-194.616
chr04	21323133	.	T	C	50672.7	PASS	AB=0.393076;ABP=909.449;AC=96;AF=0.510638;AN=188;AO=3635;CIGAR=1X;DP=9376;DPB=9376;DPRA=0;EPP=7896.31;EPPR=12469.4;GTI=10;LEN=1;MEANALT=1;MQM=41.6655;MQMR=59.1496;NS=94;NUMALT=1;ODDS=0.648311;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129917;QR=203605;RO=5741;RPL=3635;RPP=7896.31;RPPR=12469.4;RPR=0;RUN=1;SAF=0;SAP=7896.31;SAR=3635;SRF=0;SRP=12469.4;SRR=5741;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:26,28:26:924:28:989:-70.4388,0,-67.1707	0/1:54:23,31:23:820:31:1093:-79.9284,0,-57.2095	0/1:125:83,42:83:2964:42:1508:-94.8131,0,-229.232	0/1:190:139,51:139:4918:51:1801:-100.925,0,-385.104	0/1:98:72,26:72:2541:26:936:-52.4699,0,-199.268	0/1:51:40,11:40:1436:11:396:-19.6745,0,-114.019	0/0:165:151,14:151:5291:14:504:0,-5.18567,-430.945	0/1:154:105,49:105:3695:49:1748:-106.984,0,-286.201	0/1:59:26,33:26:917:33:1161:-84.2465,0,-64.9412	0/1:84:55,29:55:1953:29:1043:-64.3118,0,-150.69	0/1:58:43,15:43:1544:15:540:-30.1333,0,-121.669	0/1:111:77,34:77:2772:34:1224:-73.8923,0,-216.167	0/1:88:46,42:46:1636:42:1508:-105.626,0,-121.01	0/1:50:23,27:23:816:27:964:-69.3208,0,-58.6818	0/1:85:42,43:42:1492:43:1548:-109.642,0,-108.987	0/1:50:25,25:25:896:25:896:-63.8016,0,-65.8804	0/1:60:54,6:54:1925:6:216:-1.20305,0,-153.592	0/1:53:44,9:44:1580:9:324:-12.1064,0,-126.532	0/1:39:28,11:28:1008:11:396:-22.9726,0,-79.2889	0/1:136:102,34:102:3602:34:1224:-65.5226,0,-283.3	0/1:167:120,47:120:4226:47:1688:-96.5656,0,-330.076	0/1:162:131,31:131:4676:31:1101:-47.8973,0,-371.938	0/1:130:103,27:103:3664:27:964:-45.1377,0,-290.557	0/0:53:49,4:49:1748:4:144:0,-2.9946,-144.637	0/1:100:81,19:81:2884:19:665:-28.5597,0,-228.992	0/1:382:214,168:214:7601:168:5989:-408.851,0,-568.845	0/1:245:63,182:63:2218:182:6499:-492.268,0,-124.296	0/1:49:41,8:41:1460:8:288:-10.8192,0,-116.906	0/1:358:277,81:277:9781:81:2896:-145.353,0,-772.034	0/1:122:88,34:88:3144:34:1220:-69.8667,0,-246.364	0/1:157:96,61:96:3401:61:2196:-144.225,0,-259.044	0/1:15:6,9:6:208:9:320:-23.8493,0,-14.5436	1/1:12:1,11:1:36:11:396:-30.7319,-0.0140851,0	1/1:6:0,6:0:0:6:216:-19.2648,-1.80618,0	0/1:15:10,5:10:360:5:180:-11.6138,0,-28.2289	0/1:13:2,11:2:72:11:396:-30.769,0,-2.92333	0/1:307:153,154:153:5468:154:5490:-387.477,0,-399.776	0/1:115:88,27:88:3113:27:968:-50.5365,0,-245.692	0/1:44:25,19:25:862:19:680:-45.5233,0,-64.6454	0/1:2:1,1:1:36:1:32:-2.55657,0,-2.99521	0/1:142:119,23:119:4229:23:828:-30.1099,0,-334.339	0/1:31:22,9:22:792:9:324:-19.4207,0,-62.2674	0/1:174:126,48:126:4470:48:1712:-97.4304,0,-349.99	0/1:83:61,22:61:2165:22:780:-43.2183,0,-170.061	0/1:53:26,27:26:913:27:972:-68.8186,0,-66.5294	0/1:125:45,80:45:1569:80:2815:-208.082,0,-103.841	0/1:165:91,74:91:3199:74:2660:-181.458,0,-238.414	0/1:178:140,38:140:4953:38:1330:-63.0815,0,-392.204	0/1:136:72,64:72:2541:64:2261:-155.874,0,-187.933	0/1:72:46,26:46:1605:26:932:-60.0811,0,-122.972	0/1:144:68,76:68:2378:76:2724:-192.609,0,-170.9	0/1:4:1,3:1:36:3:108:-8.60344,0,-2.39415	0/1:118:72,46:72:2525:46:1640:-108.367,0,-191.964	0/1:61:42,19:42:1477:19:684:-41.9607,0,-114.827	0/1:2:1,1:1:32:1:36:-2.90064,0,-2.59725	0/1:175:69,106:69:2436:106:3772:-278.196,0,-166.748	0/1:51:25,26:25:888:26:936:-66.9609,0,-64.8694	1/1:4:0,4:0:0:4:140:-12.6417,-1.20412,0	0/1:17:13,4:13:460:4:144:-7.84248,0,-36.5598	0/1:71:38,33:38:1352:33:1184:-82.6966,0,-100.579	0/1:191:151,40:151:5374:40:1436:-68.7005,0,-425.942	1/1:8:0,8:0:0:8:288:-25.5697,-2.40824,0	0/1:226:173,53:173:6160:53:1896:-98.1287,0,-486.124	0/1:153:59,94:59:2104:94:3365:-247.189,0,-143.515	0/1:60:33,27:33:1176:27:968:-66.6214,0,-88.086	0/1:74:54,20:54:1893:20:720:-41.1831,0,-148.314	0/1:187:147,40:147:5221:40:1440:-68.4292,0,-412.997	0/1:124:40,84:40:1432:84:3016:-225.945,0,-91.7931	0/1:31:22,9:22:788:9:320:-18.4724,0,-61.8505	0/1:67:38,29:38:1310:29:1040:-71.2909,0,-97.9693	0/1:93:62,31:62:2208:31:1108:-68.9818,0,-170.978	0/1:22:10,12:10:352:12:428:-31.2442,0,-25.3955	0/1:120:68,52:68:2420:52:1868:-127.151,0,-181.529	0/1:69:21,48:21:744:48:1724:-129.552,0,-46.5017	0/1:235:83,152:83:2948:152:5460:-406.468,0,-194.813	0/1:105:73,32:73:2577:32:1137:-67.4219,0,-200.551	0/1:136:49,87:49:1748:87:3087:-229.748,0,-116.664	0/1:64:21,43:21:752:43:1544:-116.361,0,-48.7119	0/1:12:5,7:5:180:7:252:-18.8049,0,-12.936	0/1:72:38,34:38:1337:34:1200:-83.4341,0,-98.9398	0/1:133:67,66:67:2388:66:2346:-164.495,0,-175.141	0/1:192:142,50:142:4998:50:1788:-98.4531,0,-391.94	0/1:86:40,46:40:1413:46:1648:-118.252,0,-101.548	0/1:65:50,15:50:1781:15:536:-27.3009,0,-140.943	0/1:57:31,26:31:1116:26:936:-64.8121,0,-83.593	0/1:108:73,35:73:2612:35:1246:-76.2101,0,-202.489	0/1:44:16,28:16:576:28:1008:-75.0305,0,-38.9297	0/1:89:52,37:52:1841:37:1328:-89.0183,0,-139.087	0/1:85:44,41:44:1561:41:1468:-100.954,0,-115.192	0/1:19:11,8:11:396:8:288:-19.8501,0,-30.2595	0/1:83:48,35:48:1724:35:1256:-85.3892,0,-130.285	0/1:75:51,24:51:1836:24:860:-53.1202,0,-142.855	0/1:110:64,46:64:2258:46:1652:-111.938,0,-170.367	0/1:157:75,82:75:2673:82:2931:-207.911,0,-193.352
chr04	21486207	.	A	C	31587.2	PASS	AB=0.534633;ABP=38.808;AC=46;AF=0.25;AN=184;AO=1857;CIGAR=1X;DP=6659;DPB=6659;DPRA=1.19335;EPP=4035.43;EPPR=10421.7;GTI=1;LEN=1;MEANALT=1.08696;MQM=59.9251;MQMR=59.9783;NS=92;NUMALT=1;ODDS=1.38946;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66148;QR=172040;RO=4798;RPL=1857;RPP=4035.43;RPPR=10421.7;RPR=0;RUN=1;SAF=0;SAP=4035.43;SAR=1857;SRF=0;SRP=10421.7;SRR=4798;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:25,12:25:900:12:432:-28.0831,0,-70.1829	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/0:99:99,0:99:3545:0:0:0,-29.802,-319.257	0/0:71:67,4:67:2400:4:144:0,-8.05951,-202.943	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:40:15,25:15:540:25:882:-67.6549,0,-36.8953	0/0:101:100,1:100:3584:1:36:0,-26.8058,-319.168	0/1:52:26,26:26:936:26:909:-66.4504,0,-68.9059	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.646	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.203	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:70:37,32:37:1324:32:1148:-82.499,0,-98.3313	0/1:48:23,25:23:828:25:885:-65.5171,0,-60.3947	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:28:9,19:9:324:19:684:-53.4615,0,-21.077	0/1:32:7,25:7:252:25:892:-70.9667,0,-13.396	0/1:111:51,60:51:1817:60:2133:-158.815,0,-130.395	0/1:95:45,50:45:1608:50:1770:-130.983,0,-116.412	0/1:72:15,57:15:540:57:2009:-159.405,0,-27.2624	0/1:89:46,43:46:1656:43:1544:-112.461,0,-122.537	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:205:92,113:92:3300:113:4045:-302.525,0,-235.507	0/1:160:99,61:99:3537:61:2169:-147.31,0,-270.373	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:143:73,70:73:2616:70:2497:-181.917,0,-192.64	0/1:142:75,66:75:2688:66:2372:-170.933,0,-199.36	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.191	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:168:168,0:168:6036:0:0:0,-50.573,-543.341	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/1:56:29,27:29:1040:27:972:-70.9402,0,-77.0567	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:86:34,52:34:1220:52:1864:-142.151,0,-84.2182	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:139:61,78:61:2188:78:2785:-209.046,0,-155.343	0/1:51:27,24:27:968:24:860:-62.3693,0,-72.0848	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:91:47,44:47:1684:44:1548:-112.214,0,-124.453	0/1:124:60,64:60:2152:64:2259:-166.24,0,-156.619	0/1:152:67,85:67:2404:85:3040:-227.366,0,-170.86	0/0:82:82,0:82:2937:0:0:0,-24.6845,-264.562	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.27	.:.:.:.:.:.:.:.	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:40:24,16:24:864:16:561:-38.7759,0,-65.2619	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:112:47,65:47:1692:65:2314:-174.8,0,-118.851	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:26:10,16:10:360:16:576:-44.3482,0,-24.9175	0/1:58:28,30:28:1008:30:1070:-79.1523,0,-73.5766	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:145:67,77:67:2408:77:2736:-202.768,0,-173.268	0/0:149:149,0:149:5356:0:0:0,-44.8535,-482.084	0/1:49:36,13:36:1277:13:454:-26.4415,0,-100.481	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:110:58,52:58:2084:52:1855:-134.116,0,-154.717	0/1:126:45,81:45:1620:81:2867:-220.334,0,-108.16	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:47:47,0:47:1658:0:0:0,-14.1484,-149.504	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:68:24,44:24:860:44:1568:-120.942,0,-57.2518	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:156:75,81:75:2680:81:2881:-212.565,0,-194.485	0/1:91:38,53:38:1349:53:1900:-143.884,0,-94.3145	1/1:11:0,11:0:0:11:362:-32.8958,-3.31133,0	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:165:165,0:165:5928:0:0:0,-49.6699,-533.626	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:54:35,19:35:1260:19:675:-44.8213,0,-96.5943	0/1:47:15,32:15:540:32:1148:-89.4814,0,-34.7881	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/1:29:11,18:11:396:18:648:-49.922,0,-27.2529	0/1:73:38,34:38:1351:34:1212:-87.3524,0,-99.8557	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:114:39,75:39:1400:75:2683:-207.34,0,-91.9818	0/1:84:23,61:23:828:61:2187:-171.809,0,-49.5576	0/0:153:153,0:153:5469:0:0:0,-46.0576,-492.337	0/0:129:129,0:129:4636:0:0:0,-38.8329,-417.401
chr04	21764948	.	C	T	93318.9	PASS	AB=0.573024;ABP=114.961;AC=142;AF=0.763441;AN=186;AO=4361;CIGAR=1X;DP=5411;DPB=5411;DPRA=39.619;EPP=9472.8;EPPR=2228.77;GTI=3;LEN=1;MEANALT=1.20879;MQM=59.9782;MQMR=59.9727;NS=93;NUMALT=1;ODDS=1.79245;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156074;QR=36486;RO=1025;RPL=1;RPP=9464.12;RPPR=2228.77;RPR=4360;RUN=1;SAF=4360;SAP=9464.12;SAR=1;SRF=1025;SRP=2228.77;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:16,4:16:568:4:144:-7.29302,0,-45.4313	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:68:0,68:0:0:68:2432:-219.135,-20.47,0	1/1:161:0,161:0:0:161:5752:-517.797,-48.4658,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:58:19,39:19:667:39:1384:-107.399,0,-42.8949	1/1:81:0,81:0:0:81:2908:-261.952,-24.3834,0	0/1:71:21,49:21:756:49:1752:-136.601,0,-47.002	1/1:90:0,89:0:0:89:3181:-286.153,-26.7917,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	1/1:58:0,57:0:0:57:2027:-182.342,-17.1587,0	1/1:58:0,56:0:0:56:2003:-180.183,-16.8577,0	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.937	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:33:12,21:12:428:21:756:-58.4332,0,-28.9248	0/1:37:21,16:21:752:16:576:-41.0369,0,-56.8681	0/1:52:15,37:15:536:37:1324:-103.809,0,-32.9213	0/1:126:47,79:47:1666:79:2824:-216.47,0,-112.296	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/1:56:19,36:19:684:36:1280:-98.5869,0,-44.9739	1/1:36:1,35:1:36:35:1260:-110.107,-7.23881,0	1/1:13:0,13:0:0:13:468:-41.8283,-3.91339,0	0/1:133:57,76:57:2027:76:2728:-205.726,0,-142.665	0/1:116:52,63:52:1859:63:2260:-168.832,0,-132.758	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:122:46,76:46:1622:76:2694:-205.976,0,-109.542	0/1:68:23,45:23:820:45:1616:-125.26,0,-53.6525	1/1:76:0,76:0:0:76:2716:-244.684,-22.8783,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:163:0,163:0:0:163:5824:-524.274,-49.0679,0	1/1:44:0,44:0:0:44:1580:-142.481,-13.2453,0	0/1:51:26,25:26:924:25:896:-65.6078,0,-68.1251	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:84:34,49:34:1208:49:1752:-132.619,0,-83.6776	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:39:13,26:13:464:26:936:-72.8193,0,-30.3573	0/1:57:34,23:34:1216:23:819:-56.8729,0,-92.5879	1/1:47:0,47:0:0:47:1683:-151.756,-14.1484,0	0/1:35:12,23:12:428:23:824:-63.9473,0,-28.3228	0/1:25:4,21:4:144:21:744:-59.7586,0,-5.78787	0/1:85:36,49:36:1279:49:1756:-132.733,0,-89.8249	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	1/1:91:0,91:0:0:91:3248:-292.542,-27.3937,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:44:0,42:0:0:42:1504:-135.295,-12.6433,0	0/1:54:20,34:20:712:34:1220:-93.8512,0,-48.151	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:105:43,61:43:1536:61:2196:-166.336,0,-106.956	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:7:4,3:4:140:3:104:-7.5956,0,-10.8374	0/1:14:5,9:5:176:9:320:-24.9279,0,-11.9706	0/1:36:15,20:15:519:20:720:-54.29,0,-36.198	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:155:65,89:65:2332:89:3172:-239.077,0,-163.511	1/1:115:1,114:1:36:114:4080:-363.788,-31.0202,0	0/1:46:20,26:20:716:26:928:-69.9909,0,-50.9203	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:69:19,50:19:676:50:1796:-141.151,0,-40.3969	0/1:44:30,14:30:1067:14:500:-32.0909,0,-83.0959	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:40:0,37:0:0:37:1324:-119.102,-11.1381,0	0/1:42:19,23:19:672:23:812:-60.7577,0,-48.1636	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:117:36,81:36:1292:81:2900:-226.015,0,-81.3633	1/1:103:0,103:0:0:103:3676:-330.554,-31.0061,0	1/1:95:0,95:0:0:95:3392:-305.496,-28.5979,0	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/1:86:31,55:31:1104:55:1976:-152.226,0,-73.7788	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	1/1:52:0,51:0:0:51:1836:-165.161,-15.3525,0	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:180:0,180:0:0:180:6440:-579.687,-54.1854,0	1/1:53:0,52:0:0:52:1864:-167.671,-15.6536,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:35:15,20:15:536:20:716:-54.2317,0,-38.0388	1/1:102:0,101:0:0:101:3607:-324.476,-30.404,0	0/1:24:16,8:16:559:8:288:-19.0427,0,-43.4129	0/1:51:25,25:25:883:25:896:-65.5491,0,-64.3764	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:104:54,48:54:1936:48:1724:-124.381,0,-143.449	0/1:61:41,18:41:1430:18:648:-40.5313,0,-110.874	1/1:125:0,125:0:0:125:4476:-403.009,-37.6288,0	1/1:95:0,94:0:0:94:3368:-302.976,-28.2968,0
chr04	21764951	.	T	G	15631.9	PASS	AB=0.418652;ABP=142.912;AC=44;AF=0.236559;AN=186;AO=1024;CIGAR=1X;DP=5462;DPB=5462;DPRA=1.00503;EPP=2226.6;EPPR=9637.83;GTI=3;LEN=1;MEANALT=1.02273;MQM=59.9238;MQMR=59.9802;NS=93;NUMALT=1;ODDS=1.64019;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36515;QR=159081;RO=4437;RPL=0;RPP=2226.6;RPPR=9637.83;RPR=1024;RUN=1;SAF=1024;SAP=2226.6;SAR=0;SRF=4437;SRP=9637.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:4,16:4:144:16:572:-45.7928,0,-7.29302	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.736	0/0:166:166,0:166:5952:0:0:0,-49.971,-535.781	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:58:39,19:39:1404:19:678:-43.8886,0,-109.2	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.424	0/1:69:47,22:47:1688:22:781:-49.8418,0,-131.436	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:45:22,23:22:792:23:828:-61.2978,0,-58.0593	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4958	0/1:36:15,21:15:540:21:747:-56.7172,0,-38.0995	0/1:54:39,15:39:1404:15:532:-31.9575,0,-110.404	0/1:129:83,46:83:2965:46:1636:-108.695,0,-228.249	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:56:36,20:36:1284:20:716:-47.91,0,-99.0057	0/0:37:36,1:36:1284:1:36:0,-7.53983,-112.265	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:137:79,58:79:2828:58:2062:-144.61,0,-213.509	0/1:116:65,51:65:2332:51:1827:-129.791,0,-175.22	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:121:76,45:76:2709:45:1603:-108.135,0,-207.628	0/1:68:45,22:45:1620:22:779:-49.9035,0,-125.561	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:170:170,0:170:6104:0:0:0,-51.1751,-549.459	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.481	0/1:53:28,25:28:996:25:892:-64.6451,0,-74.0003	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:85:49,36:49:1760:36:1284:-90.2677,0,-133.096	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:41:28,13:28:1004:13:464:-29.7553,0,-78.3336	0/1:58:24,34:24:864:34:1209:-91.6553,0,-60.6228	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:35:23,12:23:828:12:428:-28.3228,0,-64.3081	0/1:24:20,4:20:712:4:144:-6.0889,0,-57.1819	0/1:84:49,35:49:1752:35:1252:-87.6986,0,-132.676	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:56:36,20:36:1288:20:712:-47.549,0,-99.3659	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:105:63,42:63:2260:42:1483:-102.154,0,-172.054	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/1:36:21,15:21:756:15:530:-37.1937,0,-57.5301	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:155:89,66:89:3188:66:2359:-165.896,0,-240.484	0/0:117:116,1:116:4152:1:36:0,-31.6222,-370.265	0/1:46:26,20:26:928:20:708:-50.1982,0,-69.9909	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:69:51,18:51:1828:18:648:-37.8808,0,-144.03	0/1:44:14,30:14:496:30:1068:-83.1867,0,-31.7289	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/1:43:23,20:23:824:20:720:-52.1845,0,-61.539	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:119:82,37:82:2917:37:1319:-83.1886,0,-226.942	0/0:104:104,0:104:3724:0:0:0,-31.3071,-334.871	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/1:88:58,30:58:2080:30:1080:-71.0226,0,-160.98	0/1:18:5,13:5:180:13:464:-36.679,0,-11.1335	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:180:180,0:180:6452:0:0:0,-54.1854,-580.765	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.508	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/1:35:20,15:20:720:15:532:-37.677,0,-54.5927	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	0/1:53:26,27:26:936:27:946:-69.3672,0,-68.6049	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.736	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:103:51,52:51:1828:52:1864:-137.031,0,-133.795	0/1:61:20,41:20:716:41:1460:-113.333,0,-46.4049	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.444	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649
chr04	21795982	.	ACTAT	CCTAAT,CCTAT	138654	PASS	AB=0.555071,0.442552;ABP=69.5,75.364;AC=147,41;AF=0.781915,0.218085;AN=188;AO=5468,1123;CIGAR=1X2M1I2M,1X4M;DP=6610;DPB=7706.8;DPRA=35.5269,0.891441;EPP=11876.6,2441.57;EPPR=5.18177;GTI=4;LEN=6,1;MEANALT=1.62366,2.11905;MQM=46.3235,59.7542;MQMR=60;NS=94;NUMALT=2;ODDS=0.0828242;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=72,72;PQR=0;PRO=0;QA=191302,40137;QR=33;RO=1;RPL=5468,1123;RPP=11876.6,2441.57;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=11876.6,2441.57;SAR=5468,1123;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:11:0,2,9:0:0:2,9:71,324:-32.5076,-26.7883,-26.1863,-6.0721,0,-3.36283	1/1:104:0,103,0:0:0:103,0:3610,0:-320.347,-31.0061,0,-320.347,-31.0061,-320.347	1/1:188:0,188,0:0:0:188,0:6542,0:-581.739,-56.5936,0,-581.739,-56.5936,-581.739	1/1:127:0,126,0:0:0:126,0:4363,0:-388.024,-37.9298,0,-388.024,-37.9298,-388.024	1/1:24:0,24,0:0:0:24,0:848,0:-76.164,-7.22472,0,-76.164,-7.22472,-76.164	1/1:23:0,23,0:0:0:23,0:817,0:-72.604,-6.92369,0,-72.604,-6.92369,-72.604	1/2:39:0,22,17:0:0:22,17:772,612:-112.583,-50.2959,-43.6733,-62.6419,0,-57.5244	1/1:83:0,83,0:0:0:83,0:2874,0:-255.924,-24.9855,0,-255.924,-24.9855,-255.924	1/2:42:0,26,16:0:0:26,16:889,576:-118.546,-47.3585,-39.5317,-71.5389,0,-66.7224	1/1:71:0,70,0:0:0:70,0:2400,0:-213.303,-21.0721,0,-213.303,-21.0721,-213.303	1/1:113:0,113,0:0:0:113,0:3943,0:-351.341,-34.0164,0,-351.341,-34.0164,-351.341	1/1:86:0,86,0:0:0:86,0:3004,0:-267.239,-25.8886,0,-267.239,-25.8886,-267.239	1/1:69:0,68,0:0:0:68,0:2372,0:-210.95,-20.47,0,-210.95,-20.47,-210.95	1/1:120:1,119,0:1:33:119,0:4136,0:-366.319,-32.8245,0,-366.62,-35.8226,-369.288	1/1:65:0,65,0:0:0:65,0:2279,0:-203.481,-19.567,0,-203.481,-19.567,-203.481	1/2:56:0,29,27:0:0:29,27:1018,953:-159.891,-77.9555,-69.2256,-82.2854,0,-74.1576	1/1:143:0,143,0:0:0:143,0:5105,0:-454.066,-43.0473,0,-454.066,-43.0473,-454.066	1/2:66:0,39,27:0:0:39,27:1341,968:-186.746,-79.3014,-67.5612,-107.796,0,-99.6677	1/2:38:0,14,24:0:0:14,24:493,860:-110.176,-70.4971,-66.2827,-40.0305,0,-32.8058	1/2:57:0,36,21:0:0:36,21:1265,756:-164.088,-61.9959,-51.1589,-102.447,0,-96.1256	1/2:64:0,44,20:0:0:44,20:1543,716:-183.438,-58.7416,-45.4962,-125.051,0,-119.031	1/2:34:0,13,20:0:0:13,20:460,705:-94.5401,-57.5025,-53.5891,-37.1367,0,-31.1161	1/2:36:0,21,15:0:0:21,15:733,540:-103.2,-44.4211,-38.0995,-59.1321,0,-54.6166	1/1:51:0,48,3:0:0:48,3:1673,108:-149.583,-14.4494,0,-140.77,-5.27736,-139.867	1/1:13:0,13,0:0:0:13,0:446,0:-40.2427,-3.91339,0,-40.2427,-3.91339,-40.2427	1/2:189:0,115,74:0:0:115,74:4032,2636:-538.585,-215.209,-180.59,-323.728,0,-301.452	1/2:114:0,61,52:0:0:61,52:2122,1856:-322.427,-151.39,-133.027,-171.116,0,-155.463	1/1:33:0,33,0:0:0:33,0:1145,0:-102.481,-9.93399,0,-102.481,-9.93399,-102.481	1/2:106:0,59,47:0:0:59,47:2077,1669:-303.304,-136.345,-118.584,-167.311,0,-153.163	1/2:79:0,57,22:0:0:57,22:2002,784:-225.673,-64.2566,-47.0979,-161.77,0,-155.147	1/1:95:0,95,0:0:0:95,0:3316,0:-295.378,-28.5979,0,-295.378,-28.5979,-295.378	1/1:4:0,4,0:0:0:4,0:137,0:-12.5974,-1.20412,0,-12.5974,-1.20412,-12.5974	1/2:8:0,7,1:0:0:7,1:250,36:-23.5142,-3.29724,-1.19003,-20.5761,0,-20.2751	1/1:3:0,3,0:0:0:3,0:98,0:-9.07201,-0.90309,0,-9.07201,-0.90309,-9.07201	1/1:3:0,3,0:0:0:3,0:105,0:-9.44189,-0.90309,0,-9.44189,-0.90309,-9.44189	1/1:9:0,9,0:0:0:9,0:323,0:-29.097,-2.70927,0,-29.097,-2.70927,-29.097	1/1:201:0,201,0:0:0:201,0:7078,0:-630.06,-60.507,0,-630.06,-60.507,-630.06	1/1:134:0,132,0:0:0:132,0:4607,0:-411.04,-39.736,0,-411.04,-39.736,-411.04	1/2:107:0,61,46:0:0:61,46:2114,1656:-304.833,-135.473,-117.11,-169.712,0,-155.865	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:75:0,47,28:0:0:47,28:1649,993:-214.534,-81.2537,-67.1053,-133.632,0,-125.204	1/1:47:0,47,0:0:0:47,0:1660,0:-148.492,-14.1484,0,-148.492,-14.1484,-148.492	1/2:21:0,9,12:0:0:9,12:319,428:-60.801,-35.2464,-32.5372,-25.9068,0,-22.2944	1/2:55:0,27,27:0:0:27,27:957,968:-156.247,-78.9549,-70.8271,-77.2973,0,-69.1695	1/1:77:0,77,0:0:0:77,0:2715,0:-242.063,-23.1793,0,-242.063,-23.1793,-242.063	1/2:26:0,11,14:0:0:11,14:387,504:-72.2767,-41.1229,-37.8116,-31.148,0,-26.9336	1/2:72:0,31,41:0:0:31,41:1090,1453:-205.494,-118.686,-109.354,-87.1572,0,-74.815	1/2:90:0,51,39:0:0:51,39:1804,1400:-260.155,-114.557,-99.2041,-145.954,0,-134.213	1/1:88:0,88,0:0:0:88,0:3088,0:-275.056,-26.4906,0,-275.056,-26.4906,-275.056	1/1:124:0,124,0:0:0:124,0:4370,0:-389.877,-37.3277,0,-389.877,-37.3277,-389.877	1/1:43:0,42,0:0:0:42,0:1444,0:-128.324,-12.6433,0,-128.324,-12.6433,-128.324	1/1:13:0,13,0:0:0:13,0:457,0:-41.1487,-3.91339,0,-41.1487,-3.91339,-41.1487	1/1:119:0,119,0:0:0:119,0:4182,0:-371.319,-35.8226,0,-371.319,-35.8226,-371.319	1/2:16:0,10,6:0:0:10,6:351,216:-46.2253,-17.9834,-14.9731,-28.597,0,-26.7908	1/1:21:0,21,0:0:0:21,0:721,0:-64.6315,-6.32163,0,-64.6315,-6.32163,-64.6315	1/2:70:0,41,29:0:0:41,29:1434,1044:-201.041,-85.5403,-73.1981,-115.855,0,-107.125	1/1:23:0,23,0:0:0:23,0:808,0:-72.3821,-6.92369,0,-72.3821,-6.92369,-72.3821	1/1:2:0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chr04	22020701	.	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chr04	22298825	.	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chr04	23034640	.	TT	TC,GC	160010	PASS	AB=0.516784,0.482087;ABP=11.6846,12.89;AC=143,45;AF=0.760638,0.239362;AN=188;AO=5723,1718;CIGAR=1M1X,2X;DP=7455;DPB=7455;DPRA=0,1.05644;EPP=12430.3,3733.6;EPPR=7.35324;GTI=0;LEN=1,2;MEANALT=1.62766,2.08333;MQM=59.7143,53.9825;MQMR=60;NS=94;NUMALT=2;ODDS=0.0556645;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=204614,60797;QR=72;RO=2;RPL=5723,1718;RPP=12430.3,3733.6;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12430.3,3733.6;SAR=5723,1718;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,19,22:0:0:19,22:684,766:-117.763,-61.9547,-56.2352,-55.8036,0,-49.1809	1/1:57:0,57,0:0:0:57,0:2052,0:-184.935,-17.1587,0,-184.935,-17.1587,-184.935	1/1:84:0,83,0:0:0:83,0:2954,0:-265.699,-24.9855,0,-265.699,-24.9855,-265.699	1/1:161:0,161,0:0:0:161,0:5753,0:-517.77,-48.4658,0,-517.77,-48.4658,-517.77	1/1:71:0,70,0:0:0:70,0:2501,0:-224.959,-21.0721,0,-224.959,-21.0721,-224.959	1/1:62:0,62,0:0:0:62,0:2212,0:-199.309,-18.6639,0,-199.309,-18.6639,-199.309	1/2:169:0,101,68:0:0:101,68:3605,2425:-491.176,-197.297,-166.893,-294.235,0,-273.765	1/2:139:0,67,72:0:0:67,72:2404,2515:-399.694,-204.388,-184.219,-195.658,0,-173.984	1/2:107:0,59,48:0:0:59,48:2102,1713:-310.611,-139.299,-121.539,-171.667,0,-157.218	1/1:88:0,88,0:0:0:88,0:3133,0:-282.189,-26.4906,0,-282.189,-26.4906,-282.189	1/1:49:0,49,0:0:0:49,0:1764,0:-159.034,-14.7505,0,-159.034,-14.7505,-159.034	1/1:72:0,72,0:0:0:72,0:2569,0:-231.429,-21.6742,0,-231.429,-21.6742,-231.429	1/1:87:0,87,0:0:0:87,0:3124,0:-281.378,-26.1896,0,-281.378,-26.1896,-281.378	1/1:71:0,71,0:0:0:71,0:2540,0:-228.846,-21.3731,0,-228.846,-21.3731,-228.846	1/1:74:0,74,0:0:0:74,0:2660,0:-239.636,-22.2762,0,-239.636,-22.2762,-239.636	1/2:47:0,18,29:0:0:18,29:633,1034:-135.884,-84.3615,-78.9429,-51.875,0,-43.1451	1/1:52:0,52,0:0:0:52,0:1833,0:-165.214,-15.6536,0,-165.214,-15.6536,-165.214	1/2:65:0,36,29:0:0:36,29:1288,1004:-186.436,-81.4154,-70.5784,-105.37,0,-96.6403	1/2:41:0,19,22:0:0:19,22:684,785:-119.932,-64.1186,-58.399,-56.1708,0,-49.5481	1/2:149:0,69,80:0:0:69,80:2480,2820:-432,-229.676,-208.905,-202.68,0,-178.597	1/2:109:0,60,49:0:0:60,49:2148,1752:-317.374,-142.207,-124.146,-175.523,0,-160.773	1/2:48:0,12,36:0:0:12,36:432,1275:-139.365,-104.115,-100.503,-35.6079,0,-24.7708	1/2:102:0,54,48:0:0:54,48:1932,1722:-298.144,-140.603,-124.347,-157.899,0,-143.449	1/1:108:0,101,7:0:0:101,7:3605,252:-324.276,-30.404,0,-303.746,-9.51494,-301.639	1/1:49:0,49,0:0:0:49,0:1756,0:-158.319,-14.7505,0,-158.319,-14.7505,-158.319	1/2:162:0,88,74:0:0:88,74:3129,2614:-468.08,-213.094,-186.603,-255.341,0,-233.064	1/2:162:0,89,73:0:0:89,73:3182,2586:-469.817,-210.384,-183.592,-259.788,0,-237.813	1/2:46:0,29,17:0:0:29,17:1040,612:-134.027,-49.1971,-40.4672,-85.1845,0,-80.067	1/2:209:0,109,100:0:0:109,100:3890,3529:-604.532,-287.413,-254.6,-317.474,0,-287.371	1/2:41:0,12,29:0:0:12,29:432,1012:-117.771,-82.5187,-78.9063,-35.6088,0,-26.879	1/1:116:0,116,0:0:0:116,0:4138,0:-372.599,-34.9195,0,-372.599,-34.9195,-372.599	1/2:5:0,2,3:0:0:2,3:72,93:-13.5922,-7.69633,-7.09427,-6.23466,0,-5.33157	1/2:22:0,10,12:0:0:10,12:360,432:-64.6148,-35.2391,-32.2288,-29.734,0,-26.1216	1/1:5:0,5,0:0:0:5,0:180,0:-16.5437,-1.50515,0,-16.5437,-1.50515,-16.5437	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/1:215:0,214,0:0:0:214,0:7696,0:-692.292,-64.4204,0,-692.292,-64.4204,-692.292	1/1:81:1,80,0:1:36:80,0:2855,0:-253.561,-20.7852,0,-253.862,-24.0824,-256.8	1/2:53:0,21,32:0:0:21,32:748,1122:-152.132,-91.1859,-84.8643,-61.2991,0,-51.6661	1/2:3:0,2,1:0:0:2,1:72,36:-9.16732,-3.29214,-2.69008,-6.23466,0,-5.93363	1/2:105:0,60,45:0:0:60,45:2156,1590:-304.859,-128.982,-110.921,-176.231,0,-162.685	1/2:57:0,25,32:0:0:25,32:899,1137:-165.749,-92.4283,-84.9025,-73.6778,0,-64.0448	1/2:94:0,55,39:0:0:55,39:1968,1370:-271.421,-110.945,-94.3888,-160.828,0,-149.087	1/2:80:0,36,43:0:0:36,43:1292,1537:-230.582,-125.196,-114.359,-105.385,0,-92.4402	1/1:55:0,55,0:0:0:55,0:1964,0:-177.031,-16.5567,0,-177.031,-16.5567,-177.031	1/2:87:0,46,41:0:0:46,41:1648,1456:-253.141,-118.736,-104.889,-134.761,0,-122.419	1/2:51:0,20,31:0:0:20,31:709,1090:-145.884,-88.1225,-82.1019,-58.1135,0,-48.7815	1/2:119:0,58,61:0:0:58,61:2084,2162:-345.361,-175.46,-158,-170.257,0,-151.894	1/2:88:0,66,22:0:0:66,22:2339,772:-253.5,-62.9584,-43.0905,-190.892,0,-184.27	1/1:93:0,93,0:0:0:93,0:3340,0:-300.814,-27.9958,0,-300.814,-27.9958,-300.814	1/1:144:1,142,1:1:36:142,1:5057,36:-451.66,-39.8088,0,-449.025,-39.8098,-451.661	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:92:0,92,0:0:0:92,0:3258,0:-293.374,-27.6948,0,-293.374,-27.6948,-293.374	1/2:36:0,25,11:0:0:25,11:896,386:-104.835,-31.7531,-24.2273,-73.4346,0,-70.1233	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:83:0,49,33:0:0:49,33:1764,1133:-235.4,-91.4562,-76.7057,-143.933,0,-133.999	1/2:62:0,23,39:0:0:23,39:824,1372:-179.155,-111.951,-1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chr04	23196128	.	AAACC	GAACA,AAACA	71300	PASS	AB=0.508979,0.484287;ABP=4.2581,6.8317;AC=140,48;AF=0.744681,0.255319;AN=188;AO=2769,867;CIGAR=1X3M1X,4M1X;DP=3659;DPB=3658.8;DPRA=19.6613,0.987583;EPP=6015.82,1885.68;EPPR=0;GTI=2;LEN=5,1;MEANALT=1.73118,2.22917;MQM=37.2871,59.7382;MQMR=0;NS=94;NUMALT=2;ODDS=2.87407;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=97470,31079;QR=0;RO=0;RPL=0,0;RPP=6015.82,1885.68;RPPR=0;RPR=2769,867;RUN=1,1;SAF=0,0;SAP=6015.82,1885.68;SAR=2769,867;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,11,15:0:0:11,15:392,525:-72.4339,-43.0462,-39.7349,-29.7262,0,-25.2108	1/1:33:0,33,0:0:0:33,0:1149,0:-95.6125,-9.93399,0,-95.6125,-9.93399,-95.6125	1/1:55:0,55,0:0:0:55,0:1946,0:-164.027,-16.5567,0,-164.027,-16.5567,-164.027	1/1:54:0,54,0:0:0:54,0:1905,0:-161.74,-16.2556,0,-161.74,-16.2556,-161.74	1/1:34:0,34,0:0:0:34,0:1208,0:-99.3085,-10.235,0,-99.3085,-10.235,-99.3085	1/1:10:0,10,0:0:0:10,0:347,0:-29.8548,-3.0103,0,-29.8548,-3.0103,-29.8548	1/2:42:0,17,25:0:0:17,25:595,900:-118.681,-73.7871,-68.6696,-45.2343,0,-37.7085	1/2:68:0,41,27:0:0:41,27:1445,972:-189.873,-79.6537,-67.3115,-110.568,0,-102.44	1/2:34:0,22,12:0:0:22,12:776,432:-94.8859,-35.6006,-28.978,-59.6356,0,-56.0232	1/1:26:0,25,0:0:0:25,0:871,0:-73.6338,-7.52575,0,-73.6338,-7.52575,-73.6338	1/1:33:0,33,0:0:0:33,0:1165,0:-98.2487,-9.93399,0,-98.2487,-9.93399,-98.2487	1/1:53:0,53,0:0:0:53,0:1878,0:-159.864,-15.9546,0,-159.864,-15.9546,-159.864	1/1:40:0,40,0:0:0:40,0:1416,0:-119.205,-12.0412,0,-119.205,-12.0412,-119.205	1/1:34:0,34,0:0:0:34,0:1182,0:-98.1955,-10.235,0,-98.1955,-10.235,-98.1955	1/1:16:0,16,0:0:0:16,0:555,0:-47.6603,-4.81648,0,-47.6603,-4.81648,-47.6603	1/2:32:0,17,15:0:0:17,15:605,540:-90.1858,-44.4211,-39.3036,-46.1118,0,-41.5963	1/1:23:0,23,0:0:0:23,0:826,0:-69.4263,-6.92369,0,-69.4263,-6.92369,-69.4263	1/2:9:0,6,3:0:0:6,3:215,108:-25.5866,-9.17208,-7.3659,-16.767,0,-15.8639	1/2:24:0,18,6:0:0:18,6:629,216:-65.9285,-17.9843,-12.5658,-48.2964,0,-46.4902	1/2:59:0,28,31:0:0:28,31:978,1112:-165.593,-91.0594,-82.6306,-74.877,0,-65.5451	1/2:29:0,19,10:0:0:19,10:662,360:-79.4351,-29.7331,-24.0135,-50.0496,0,-47.0393	1/2:40:0,14,26:0:0:14,26:498,927:-113.995,-75.9206,-71.7062,-38.4175,0,-30.5908	1/2:39:0,18,21:0:0:18,21:637,748:-109.217,-61.3237,-55.9051,-48.2353,0,-41.9136	1/1:20:0,20,0:0:0:20,0:706,0:-59.4734,-6.0206,0,-59.4734,-6.0206,-59.4734	1/1:29:0,29,0:0:0:29,0:1025,0:-85.8342,-8.72987,0,-85.8342,-8.72987,-85.8342	1/2:117:0,67,47:0:0:67,47:2351,1688:-316.991,-137.769,-117.6,-179.279,0,-165.131	1/2:71:0,30,41:0:0:30,41:1063,1476:-200.264,-120.77,-111.739,-79.8356,0,-67.4934	1/2:8:0,4,4:0:0:4,4:143,144:-22.8855,-12.1095,-10.9054,-11.1225,0,-9.91836	1/2:64:0,24,40:0:0:24,40:850,1423:-180.296,-116.317,-109.093,-64.3178,0,-52.2766	1/2:65:0,33,32:0:0:33,32:1171,1148:-182.494,-93.9923,-84.0583,-88.847,0,-79.2141	1/1:54:0,54,0:0:0:54,0:1901,0:-159.15,-16.2556,0,-159.15,-16.2556,-159.15	1/2:8:0,7,1:0:0:7,1:240,36:-20.6706,-3.29724,-1.19003,-17.727,0,-17.4259	1/2:12:0,7,5:0:0:7,5:252,180:-32.4084,-15.0469,-12.9397,-17.7004,0,-16.1952	1/1:2:0,2,0:0:0:2,0:72,0:-6.43644,-0.60206,0,-6.43644,-0.60206,-6.43644	1/1:7:0,7,0:0:0:7,0:242,0:-20.9735,-2.10721,0,-20.9735,-2.10721,-20.9735	1/1:20:0,20,0:0:0:20,0:711,0:-59.918,-6.0206,0,-59.918,-6.0206,-59.918	1/1:106:0,105,0:0:0:105,0:3723,0:-313.09,-31.6082,0,-313.09,-31.6082,-313.09	1/1:60:0,60,0:0:0:60,0:2103,0:-176.76,-18.0618,0,-176.76,-18.0618,-176.76	1/2:30:0,17,13:0:0:17,13:609,468:-84.2616,-38.538,-33.4205,-46.0715,0,-42.1581	1/2:4:0,1,3:0:0:1,3:36,108:-11.8763,-9.17208,-8.87105,-3.04512,0,-2.14203	1/2:41:0,15,26:0:0:15,26:539,932:-116.968,-76.3721,-71.8566,-40.9391,0,-33.1123	1/2:17:0,10,7:0:0:10,7:358,252:-47.9059,-20.9217,-17.9114,-27.3331,0,-25.2259	1/2:58:0,33,25:0:0:33,25:1168,896:-161.577,-73.4239,-63.49,-88.4996,0,-80.9739	1/2:18:0,12,6:0:0:12,6:424,216:-50.4672,-17.9843,-14.372,-32.8343,0,-31.0281	1/1:19:0,19,0:0:0:19,0:665,0:-55.6525,-5.71957,0,-55.6525,-5.71957,-55.6525	1/2:37:0,17,20:0:0:17,20:607,716:-105.162,-58.7471,-53.6296,-46.7617,0,-40.7411	1/2:60:0,23,35:0:0:23,35:822,1245:-163.391,-101.519,-94.5952,-61.9142,0,-51.3782	1/2:63:0,35,28:0:0:35,28:1199,1008:-173.853,-82.5817,-72.0457,-91.6148,0,-83.1859	1/2:34:0,10,24:0:0:10,24:353,864:-97.8644,-70.8578,-67.8475,-27.3478,0,-20.1231	1/1:52:0,52,0:0:0:52,0:1843,0:-155.094,-15.6536,0,-155.094,-15.6536,-155.094	1/1:56:0,56,0:0:0:56,0:1962,0:-166.395,-16.8577,0,-166.395,-16.8577,-166.395	1/1:6:0,6,0:0:0:6,0:212,0:-18.3835,-1.80618,0,-18.3835,-1.80618,-18.3835	1/1:57:0,57,0:0:0:57,0:2013,0:-171.466,-17.1587,0,-171.466,-17.1587,-171.466	1/2:30:0,13,17:0:0:13,17:446,603:-83.0004,-49.482,-45.5686,-33.8534,0,-28.7359	1/1:12:0,12,0:0:0:12,0:407,0:-35.0364,-3.61236,0,-35.0364,-3.61236,-35.0364	1/2:59:0,24,35:0:0:24,35:853,1252:-167.1,-102.449,-95.2243,-64.994,0,-54.4579	1/2:19:0,9,10:0:0:9,10:320,360:-54.011,-29.734,-27.0247,-24.6228,0,-21.6125	1/2:7:0,2,4:0:0:2,4:70,140:-16.8214,-11.4466,-10.8446,-5.41069,0,-4.20657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chr04	23196161	.	G	A	51528.8	PASS	AB=0.508523;ABP=4.12071;AC=140;AF=0.744681;AN=188;AO=2748;CIGAR=1X;DP=3617;DPB=3617;DPRA=19.4355;EPP=5961.53;EPPR=1890.02;GTI=2;LEN=1;MEANALT=1;MQM=37.2635;MQMR=59.6835;NS=94;NUMALT=1;ODDS=2.6902;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97953;QR=31076;RO=869;RPL=2747;RPP=5961.53;RPPR=1890.02;RPR=1;RUN=1;SAF=0;SAP=5970.22;SAR=2748;SRF=0;SRP=1890.02;SRR=869;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:15,11:15:531:11:392:-25.1981,0,-40.2859	1/1:33:0,33:0:0:33:1173:-96.9203,-9.93399,0	1/1:55:0,55:0:0:55:1942:-163.565,-16.5567,0	1/1:54:0,54:0:0:54:1906:-161.637,-16.2556,0	1/1:34:0,34:0:0:34:1209:-99.2101,-10.235,0	1/1:9:0,9:0:0:9:324:-27.7783,-2.70927,0	0/1:43:26,17:26:932:17:589:-36.8067,0,-71.2464	0/1:69:28,41:28:1004:41:1442:-101.532,0,-69.8875	0/1:34:12,22:12:432:22:784:-56.5452,0,-28.978	1/1:26:0,26:0:0:26:924:-77.2276,-7.82678,0	1/1:33:0,33:0:0:33:1179:-99.2228,-9.93399,0	1/1:53:0,53:0:0:53:1904:-161.471,-15.9546,0	1/1:40:1,39:1:36:39:1385:-112.491,-8.45197,0	1/1:32:0,32:0:0:32:1121:-92.2377,-9.63296,0	1/1:16:0,16:0:0:16:576:-49.0075,-4.81648,0	0/1:32:15,17:15:540:17:608:-41.7554,0,-39.3036	1/1:23:0,23:0:0:23:828:-69.5319,-6.92369,0	0/1:9:3,6:3:108:6:216:-15.9225,0,-7.3659	0/1:24:7,17:7:233:17:608:-44.0959,0,-14.0613	0/1:57:30,27:30:1080:27:968:-64.8654,0,-80.3545	0/1:29:11,18:11:392:18:648:-45.5482,0,-26.8893	0/1:40:26,14:26:928:14:500:-30.7229,0,-71.7971	0/1:38:21,17:21:752:17:612:-39.8664,0,-56.5671	1/1:20:0,20:0:0:20:701:-58.9237,-6.0206,0	1/1:29:0,29:0:0:29:1036:-86.4263,-8.72987,0	0/1:115:48,67:48:1720:67:2408:-168.869,0,-120.389	0/1:72:42,30:42:1508:30:1042:-65.6979,0,-114.316	0/1:8:4,4:4:144:4:144:-9.9725,0,-10.9054	0/1:64:40,24:40:1428:24:864:-53.1944,0,-109.543	0/1:63:31,32:31:1093:32:1133:-76.4593,0,-79.7082	1/1:54:0,54:0:0:54:1907:-159.394,-16.2556,0	0/1:8:1,7:1:36:7:252:-18.2032,0,-1.19003	0/1:12:5,7:5:180:7:252:-16.1952,0,-12.9397	1/1:2:0,2:0:0:2:72:-6.43644,-0.60206,0	1/1:7:0,7:0:0:7:252:-21.5997,-2.10721,0	1/1:20:0,20:0:0:20:720:-60.4852,-6.0206,0	1/1:105:0,105:0:0:105:3768:-315.763,-31.6082,0	1/1:57:0,57:0:0:57:2044:-170.931,-17.1587,0	0/1:30:13,17:13:464:17:612:-42.3219,0,-33.0633	0/1:4:3,1:3:108:1:36:-2.14203,0,-8.87105	0/1:40:25,15:25:896:15:540:-33.4664,0,-68.9192	0/1:16:6,10:6:216:10:360:-25.6335,0,-14.974	0/1:56:25,31:25:900:31:1104:-76.1527,0,-64.4527	0/1:17:6,11:6:216:11:396:-28.8054,0,-14.673	1/1:18:0,18:0:0:18:648:-53.8509,-5.41854,0	0/1:37:20,17:20:716:17:608:-40.7729,0,-53.6296	0/1:60:36,24:36:1277:24:864:-53.6494,0,-97.1611	0/1:59:25,34:25:881:34:1224:-85.1826,0,-61.8451	0/1:34:24,10:24:860:10:360:-20.5921,0,-67.4868	1/1:50:0,50:0:0:50:1777:-149.937,-15.0515,0	1/1:56:0,56:0:0:56:1993:-167.986,-16.8577,0	1/1:6:0,6:0:0:6:208:-18.1095,-1.80618,0	1/1:57:0,57:0:0:57:2022:-171.625,-17.1587,0	0/1:30:17,13:17:608:13:468:-30.1904,0,-46.0211	1/1:12:0,12:0:0:12:428:-36.6661,-3.61236,0	0/1:59:35,24:35:1252:24:860:-54.8654,0,-95.2243	0/1:19:10,9:10:345:9:320:-21.5792,0,-25.6613	0/1:7:5,2:5:180:2:72:-4.32923,0,-14.4365	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:29:12,17:12:432:17:604:-40.85,0,-29.837	1/1:84:0,84:0:0:84:3005:-251.765,-25.2865,0	1/1:8:0,8:0:0:8:288:-24.5403,-2.40824,0	0/1:55:25,30:25:892:30:1072:-73.9839,0,-64.0267	1/1:81:0,81:0:0:81:2873:-239.933,-24.3834,0	0/1:28:9,19:9:324:19:680:-48.9359,0,-21.077	1/1:36:1,35:1:36:35:1260:-102.946,-7.24785,0	0/1:73:24,49:24:860:49:1726:-124.251,0,-55.7466	0/1:95:45,50:45:1620:50:1780:-118.569,0,-117.492	1/1:13:0,13:0:0:13:464:-39.2344,-3.91339,0	1/1:27:0,27:0:0:27:968:-81.6512,-8.12781,0	1/1:25:0,25:0:0:25:900:-75.1453,-7.52575,0	0/1:16:7,9:7:252:9:324:-22.9241,0,-18.2125	1/1:73:0,73:0:0:73:2609:-220.358,-21.9752,0	1/1:30:0,30:0:0:30:1072:-89.11,-9.0309,0	1/1:79:0,79:0:0:79:2798:-234.653,-23.7814,0	1/1:70:0,70:0:0:70:2463:-208.481,-21.0721,0	0/1:34:20,14:20:720:14:500:-32.5332,0,-54.8774	0/1:35:16,19:16:568:19:668:-45.9902,0,-40.9125	0/1:8:2,6:2:72:6:212:-15.4152,0,-4.42848	1/1:37:0,37:0:0:37:1317:-109.592,-11.1381,0	1/1:25:0,25:0:0:25:885:-75.2086,-7.52575,0	1/1:87:0,87:0:0:87:3109:-260.547,-26.1896,0	1/1:42:0,42:0:0:42:1493:-123.996,-12.6433,0	1/1:29:0,29:0:0:29:1040:-87.5682,-8.72987,0	0/1:13:7,6:7:252:6:216:-14.7184,0,-19.1156	1/1:54:0,54:0:0:54:1936:-163.42,-16.2556,0	0/1:12:5,7:5:180:7:252:-18.0683,0,-12.9397	0/1:30:17,13:17:608:13:468:-30.8624,0,-46.0211	1/1:36:0,36:0:0:36:1296:-108.186,-10.8371,0	1/1:27:0,27:0:0:27:968:-81.7556,-8.12781,0	0/1:99:49,50:49:1760:50:1788:-117.872,0,-128.861	0/1:22:12,10:12:432:10:360:-24.2045,0,-32.5903	1/1:43:0,43:0:0:43:1521:-127.43,-12.9443,0	1/1:48:0,48:0:0:48:1705:-142.148,-14.4494,0
chr04	23274013	.	GACTC	GACTT,AACTT	138591	PASS	AB=0.454861,0.539931;ABP=64.1734,50.8732;AC=140,48;AF=0.744681,0.255319;AN=188;AO=4659,1872;CIGAR=4M1X,1X3M1X;DP=6569;DPB=6568.6;DPRA=70.6237,1.19674;EPP=10119.9,4068.01;EPPR=7.35324;GTI=3;LEN=1,5;MEANALT=1.88172,2.30769;MQM=59.8985,59.6816;MQMR=41.5;NS=94;NUMALT=2;ODDS=0.598031;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=166608,65344;QR=72;RO=2;RPL=0,0;RPP=10119.9,4068.01;RPPR=7.35324;RPR=4659,1872;RUN=1,1;SAF=4659,1872;SAP=10119.9,4068.01;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,19,19:0:0:19,19:680,664:-109.822,-54.3655,-48.646,-55.8096,0,-50.09	1/1:80:0,80,0:0:0:80,0:2846,0:-256.37,-24.0824,0,-256.37,-24.0824,-256.37	1/1:59:0,59,0:0:0:59,0:2107,0:-189.899,-17.7608,0,-189.899,-17.7608,-189.899	1/1:113:0,112,1:0:0:112,1:3997,36:-359.557,-33.7154,0,-356.619,-30.4181,-356.318	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:35:0,35,0:0:0:35,0:1256,0:-113.345,-10.5361,0,-113.345,-10.5361,-113.345	1/2:111:0,54,57:0:0:54,57:1928,1983:-318.77,-161.583,-145.327,-157.539,0,-140.381	1/2:124:0,70,54:0:0:70,54:2504,1898:-359.028,-154.842,-133.77,-204.541,0,-188.285	1/2:69:0,28,39:0:0:28,39:995,1377:-193.291,-112.208,-103.78,-81.1548,0,-69.4147	1/1:60:0,60,0:0:0:60,0:2119,0:-190.95,-18.0618,0,-190.95,-18.0618,-190.95	1/1:63:1,62,0:1:36:62,0:2214,0:-195.924,-15.3666,0,-196.225,-18.6639,-199.163	1/1:57:0,57,0:0:0:57,0:2048,0:-184.536,-17.1587,0,-184.536,-17.1587,-184.536	1/1:71:0,71,0:0:0:71,0:2548,0:-229.569,-21.3731,0,-229.569,-21.3731,-229.569	1/1:125:0,124,0:0:0:124,0:4432,0:-398.781,-37.3277,0,-398.781,-37.3277,-398.781	1/1:64:0,64,0:0:0:64,0:2291,0:-206.451,-19.2659,0,-206.451,-19.2659,-206.451	1/2:45:1,20,24:1:36:20,24:716,843:-125.07,-66.9784,-62.7028,-56.7693,0,-51.2883	1/1:103:0,103,0:0:0:103,0:3700,0:-333.201,-31.0061,0,-333.201,-31.0061,-333.201	1/2:53:0,29,23:0:0:29,23:1040,801:-149.956,-65.125,-56.3951,-84.8247,0,-77.901	1/2:40:0,17,22:0:0:17,22:612,772:-112.477,-62.537,-57.4195,-49.9361,0,-43.3134	1/2:123:0,49,74:0:0:49,74:1752,2584:-353.385,-210.526,-195.775,-143.214,0,-120.937	1/2:93:0,34,58:0:0:34,58:1224,2031:-265.16,-165.284,-155.049,-99.9304,0,-82.4706	1/2:56:0,18,37:0:0:18,37:648,1303:-158.936,-106.06,-100.641,-52.9208,0,-41.7827	1/2:76:0,31,45:0:0:31,45:1098,1541:-214.789,-125.343,-116.011,-89.7952,0,-76.2488	1/2:93:0,80,13:0:0:80,13:2857,445:-269.356,-36.4568,-12.3744,-233.243,0,-229.33	1/1:44:0,44,0:0:0:44,0:1548,0:-139.609,-13.2453,0,-139.609,-13.2453,-139.609	1/2:201:0,89,112:0:0:89,112:3185,3883:-575.41,-315.687,-288.895,-260.076,0,-226.36	1/2:198:0,83,113:0:0:83,113:2978,3954:-564.641,-321.734,-296.749,-242.952,0,-208.935	1/2:22:0,11,11:0:0:11,11:396,384:-63.896,-31.5836,-28.2723,-32.6668,0,-29.3555	1/2:166:0,79,87:0:0:79,87:2832,3059:-480.304,-249.322,-225.541,-231.337,0,-205.147	1/2:98:0,46,52:0:0:46,52:1644,1814:-281.8,-147.756,-133.909,-134.397,0,-118.743	1/1:152:0,150,0:0:0:150,0:5355,0:-481.716,-45.1545,0,-481.716,-45.1545,-481.716	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:8:0,3,5:0:0:3,5:108,169:-22.8572,-14.0367,-13.1336,-9.17208,0,-7.66693	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:152:0,151,0:0:0:151,0:5404,0:-486.131,-45.4555,0,-486.131,-45.4555,-486.131	1/1:67:0,65,0:0:0:65,0:2314,0:-208.131,-19.567,0,-208.131,-19.567,-208.131	1/2:58:0,32,26:0:0:32,26:1144,911:-167.705,-74.4218,-64.7888,-93.6366,0,-85.8098	2/2:1:0,0,1:0:0:0,1:0,35:-3.48923,-3.48923,-3.48923,-0.30103,-0.30103,0	1/2:137:0,47,89:0:0:47,89:1672,3109:-389.151,-252.887,-238.739,-136.257,0,-109.466	1/2:26:0,17,9:0:0:17,9:612,312:-75.6499,-25.7051,-20.5876,-50.2959,0,-47.5867	1/2:75:0,29,45:0:0:29,45:1044,1567:-212.708,-127.517,-118.788,-85.2913,0,-71.745	1/2:82:0,29,52:0:0:29,52:1034,1807:-231.264,-146.973,-138.243,-84.3615,0,-68.7079	1/1:48:0,48,0:0:0:48,0:1728,0:-155.805,-14.4494,0,-155.805,-14.4494,-155.805	1/2:60:0,29,29:0:0:29,29:1036,1001:-165.774,-81.3015,-72.5716,-84.4644,0,-75.7345	1/2:64:0,24,40:0:0:24,40:860,1402:-184.571,-114.429,-107.204,-70.4971,0,-58.4559	1/2:162:0,87,75:0:0:87,75:3096,2617:-464.96,-212.635,-186.445,-252.677,0,-230.099	1/2:78:0,32,46:0:0:32,46:1137,1619:-224.755,-132.133,-122.5,-92.9756,0,-79.1282	1/1:94:0,94,0:0:0:94,0:3372,0:-303.695,-28.2968,0,-303.695,-28.2968,-303.695	1/1:90:0,90,0:0:0:90,0:3219,0:-289.931,-27.0927,0,-289.931,-27.0927,-289.931	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:65:0,64,0:0:0:64,0:2292,0:-206.182,-19.2659,0,-206.182,-19.2659,-206.182	1/2:33:0,16,17:0:0:16,17:568,606:-96.0334,-49.7536,-44.9371,-46.6354,0,-41.5179	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/2:83:0,33,50:0:0:33,50:1184,1745:-238.856,-142.277,-132.343,-96.9343,0,-81.8828	1/2:34:0,11,22:0:0:11,22:396,762:-94.3778,-62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chr04	23274025	.	C	T	97360.6	PASS	AB=0.462669;ABP=44.1904;AC=140;AF=0.744681;AN=188;AO=4647;CIGAR=1X;DP=6488;DPB=6488;DPRA=69.7527;EPP=9826.38;EPPR=3744.09;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.89;MQMR=59.7246;NS=94;NUMALT=1;ODDS=0.295483;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165297;QR=64860;RO=1837;RPL=31;RPP=9826.38;RPPR=3752.51;RPR=4616;RUN=1;SAF=4647;SAP=10093.8;SAR=0;SRF=1836;SRP=3983.32;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:18,20:18:644:20:703:-52.1544,0,-46.8515	1/1:82:0,82:0:0:82:2932:-264.102,-24.6845,0	1/1:58:0,58:0:0:58:2045:-184.32,-17.4597,0	1/1:109:1,108:1:36:108:3860:-343.995,-29.214,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	0/1:107:55,52:55:1947:52:1846:-134.204,0,-143.292	0/1:122:53,69:53:1884:69:2460:-184.929,0,-133.113	0/1:71:41,30:41:1443:30:1076:-75.7797,0,-108.791	1/1:59:0,59:0:0:59:2088:-188.189,-17.7608,0	1/1:62:0,62:0:0:62:2228:-200.782,-18.6639,0	1/1:58:0,58:0:0:58:2054:-185.13,-17.4597,0	1/1:68:0,68:0:0:68:2436:-219.494,-20.47,0	1/1:125:0,124:0:0:124:4389:-394.915,-37.3277,0	1/1:62:0,62:0:0:62:2208:-198.983,-18.6639,0	0/1:46:24,22:24:834:22:788:-56.2039,0,-61.4913	1/1:104:0,104:0:0:104:3692:-332.478,-31.3071,0	0/1:52:24,28:24:852:28:1000:-74.6618,0,-61.3459	0/1:35:20,15:20:711:15:536:-38.0388,0,-53.3477	0/1:124:73,51:73:2577:51:1832:-127.833,0,-194.841	0/1:89:56,33:56:1986:33:1176:-79.3561,0,-152.221	0/1:56:38,18:38:1360:18:644:-41.4329,0,-105.781	0/1:77:44,33:44:1558:33:1167:-82.1547,0,-116.703	0/1:92:13,79:13:452:79:2813:-225.673,0,-13.3092	1/1:44:0,44:0:0:44:1559:-140.601,-13.2453,0	0/1:194:108,86:108:3839:86:3087:-219.653,0,-286.453	0/1:191:111,80:111:3938:80:2822:-196.721,0,-297.115	0/1:22:11,11:11:384:11:392:-28.9928,0,-28.272	0/1:163:83,79:83:2960:79:2807:-203.803,0,-217.56	0/1:98:52,46:52:1828:46:1640:-118.383,0,-135.273	1/1:148:1,147:1:36:147:5227:-466.885,-40.9542,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:152:0,152:0:0:152:5435:-489.28,-45.7566,0	1/1:65:0,65:0:0:65:2307:-207.854,-19.567,0	0/1:58:26,32:26:936:32:1144:-85.8098,0,-67.0402	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58648	0/1:131:87,44:87:3099:44:1553:-100.624,0,-239.692	0/1:26:8,18:8:275:18:644:-50.4638,0,-17.2563	0/1:72:42,30:42:1471:30:1072:-75.1137,0,-110.974	0/1:82:53,29:53:1830:29:1021:-67.5172,0,-140.287	1/1:46:1,45:1:36:45:1592:-139.969,-10.2491,0	0/1:61:31,30:31:1085:30:1063:-77.618,0,-79.5925	0/1:65:40,25:40:1375:25:892:-61.0327,0,-104.468	0/1:157:70,87:70:2490:87:3104:-232.321,0,-176.373	0/1:79:45,34:45:1587:34:1207:-85.1255,0,-119.282	1/1:94:0,94:0:0:94:3326:-299.557,-28.2968,0	1/1:88:0,88:0:0:88:3122:-281.207,-26.4906,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:63:0,63:0:0:63:2243:-202.133,-18.9649,0	0/1:30:17,13:17:608:13:468:-33.4287,0,-46.0211	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:80:48,32:48:1683:32:1140:-78.8268,0,-127.669	0/1:33:21,12:21:730:12:432:-29.2872,0,-56.0855	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2001	0/1:12:3,9:3:104:9:320:-25.53,0,-6.09045	0/1:47:22,25:22:784:25:896:-66.7943,0,-55.6277	1/1:93:0,92:0:0:92:3270:-294.159,-27.6948,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:154:91,63:91:3219:63:2243:-155.763,0,-243.564	1/1:81:0,81:0:0:81:2894:-260.607,-24.3834,0	0/1:54:21,33:21:743:33:1184:-90.6125,0,-50.9377	1/1:51:0,51:0:0:51:1777:-160.103,-15.3525,0	0/1:95:49,46:49:1703:46:1635:-118.84,0,-124.521	0/1:40:25,15:25:874:15:528:-35.8102,0,-66.934	1/1:40:0,40:0:0:40:1412:-127.371,-12.0412,0	1/1:45:0,45:0:0:45:1587:-143.045,-13.5464,0	1/1:97:0,97:0:0:97:3466:-311.881,-29.1999,0	0/1:10:4,6:4:144:6:207:-15.9566,0,-10.3033	1/1:33:1,32:1:36:32:1152:-100.392,-6.33572,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:73:0,73:0:0:73:2594:-233.708,-21.9752,0	1/1:116:0,116:0:0:116:4134:-372.227,-34.9195,0	0/1:67:41,26:41:1455:26:906:-61.6845,0,-111.076	0/1:95:49,46:49:1720:46:1632:-118.571,0,-126.484	0/1:11:7,4:7:240:4:140:-9.63325,0,-18.6233	1/1:113:2,111:2:72:111:3971:-350.739,-27.1797,0	1/1:55:0,55:0:0:55:1949:-174.88,-16.5567,0	1/1:115:1,114:1:36:114:4055:-361.502,-31.0202,0	1/1:90:1,89:1:36:89:3167:-281.651,-23.4944,0	1/1:94:0,94:0:0:94:3350:-301.717,-28.2968,0	0/1:93:51,42:51:1793:42:1464:-104.055,0,-133.654	1/1:102:1,101:1:36:101:3571:-317.998,-27.1068,0	0/1:37:31,6:31:1094:6:216:-8.6524,0,-87.6302	0/1:61:32,29:32:1120:29:1036:-75.1911,0,-82.7387	1/1:69:0,69:0:0:69:2439:-219.699,-20.7711,0	1/1:50:0,49:0:0:49:1756:-157.964,-14.7505,0	0/1:87:30,57:30:1068:57:2036:-157.317,0,-70.2239	0/1:73:50,23:50:1749:23:813:-51.5139,0,-135.676	1/1:47:0,47:0:0:47:1657:-149.414,-14.1484,0	1/1:101:0,101:0:0:101:3591:-323.124,-30.404,0
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chr04	23360373	.	G	A	81607.7	PASS	AB=0.495192;ABP=3.51141;AC=139;AF=0.747312;AN=186;AO=3900;CIGAR=1X;DP=5174;DPB=5174;DPRA=28.1087;EPP=8463.07;EPPR=2767.29;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.0879;MQMR=59.8555;NS=93;NUMALT=1;ODDS=2.80989;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138975;QR=45118;RO=1273;RPL=3900;RPP=8471.75;RPPR=2767.29;RPR=0;RUN=1;SAF=3899;SAP=8463.07;SAR=1;SRF=1273;SRP=2767.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.4939	1/1:53:1,52:1:36:52:1845:-162.559,-12.3563,0	1/1:77:1,76:1:32:76:2703:-240.188,-19.98,0	1/1:85:1,84:1:36:84:2981:-264.811,-21.9893,0	1/1:34:0,34:0:0:34:1212:-109.292,-10.235,0	1/1:15:0,15:0:0:15:540:-48.8453,-4.51545,0	0/1:69:46,23:46:1619:23:824:-53.3918,0,-125.213	0/1:91:48,43:48:1711:43:1544:-111.588,0,-126.881	0/1:64:33,31:33:1167:31:1097:-79.7487,0,-86.0705	1/1:63:0,63:0:0:63:2237:-201.522,-18.9649,0	1/1:40:0,40:0:0:40:1423:-128.207,-12.0412,0	1/1:58:0,58:0:0:58:2076:-186.765,-17.4597,0	1/1:75:0,75:0:0:75:2663:-238.475,-22.5773,0	1/1:58:1,57:1:36:57:2040:-180.158,-13.8615,0	1/1:59:0,59:0:0:59:2116:-190.659,-17.7608,0	0/1:50:23,27:23:806:27:968:-72.3703,0,-57.8067	1/1:43:0,43:0:0:43:1524:-137.315,-12.9443,0	0/1:40:19,21:19:684:21:752:-55.9237,0,-49.8491	0/1:23:12,11:12:432:11:389:-28.4165,0,-32.2975	0/1:106:60,46:60:2131:46:1640:-115.969,0,-160.149	0/1:97:49,48:49:1743:48:1720:-125.663,0,-127.954	0/1:69:44,25:44:1561:25:896:-60.1847,0,-119.98	0/1:31:23,8:23:828:8:288:-16.9355,0,-65.5122	1/1:63:4,59:4:144:59:2107:-176.57,-5.65127,0	1/1:50:0,50:0:0:50:1792:-161.446,-15.0515,0	0/1:169:77,92:77:2760:92:3275:-244.066,0,-197.34	0/1:123:57,66:57:2023:66:2335:-173.113,0,-144.998	0/1:37:14,23:14:500:23:828:-63.6835,0,-34.1957	0/1:150:81,69:81:2853:69:2471:-177.489,0,-211.852	0/1:62:29,33:29:1027:33:1169:-86.7282,0,-74.0783	1/1:65:0,65:0:0:65:2319:-208.929,-19.567,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:5:0,5:0:0:5:161:-14.8056,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:163:0,163:0:0:163:5803:-522.325,-49.0679,0	1/1:110:0,110:0:0:110:3879:-349.016,-33.1133,0	0/1:41:17,24:17:612:24:856:-64.907,0,-43.0712	.:.:.:.:.:.:.:.	0/1:87:52,35:52:1819:35:1241:-85.7329,0,-137.798	0/1:34:17,17:17:612:17:612:-45.1536,0,-45.1784	0/1:42:23,19:23:828:19:676:-48.5077,0,-62.2009	0/1:59:23,36:23:801:36:1274:-97.1356,0,-54.6459	1/1:51:0,51:0:0:51:1812:-163.331,-15.3525,0	0/1:86:44,42:44:1572:42:1504:-109.766,0,-115.875	0/1:47:16,31:16:576:31:1115:-86.4388,0,-38.0266	0/1:53:20,33:20:716:33:1167:-89.3383,0,-48.8131	0/1:61:30,31:30:1058:31:1089:-79.9484,0,-76.7372	1/1:48:0,48:0:0:48:1688:-151.965,-14.4494,0	1/1:30:0,29:0:0:29:1040:-93.5382,-8.72987,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:47:0,47:0:0:47:1671:-150.638,-14.1484,0	0/1:14:9,5:9:324:5:180:-12.3293,0,-25.2914	1/1:10:0,10:0:0:10:333:-30.287,-3.0103,0	0/1:35:20,15:20:671:15:536:-38.0028,0,-50.1637	0/1:30:14,16:14:489:16:557:-41.4247,0,-35.308	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:35:20,15:20:702:15:531:-37.5845,0,-52.107	1/1:111:0,111:0:0:111:3975:-357.8,-33.4143,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:67:39,28:39:1385:28:1008:-70.8428,0,-104.778	1/1:82:0,82:0:0:82:2935:-263.99,-24.6845,0	0/1:35:10,25:10:360:25:892:-70.0346,0,-22.2083	1/1:27:0,27:0:0:27:953:-85.8924,-8.12781,0	0/1:93:37,56:37:1312:56:1989:-151.262,0,-90.3859	1/1:58:1,57:1:32:57:2040:-180.61,-14.2604,0	1/1:14:0,14:0:0:14:504:-45.6957,-4.21442,0	1/1:39:0,39:0:0:39:1381:-123.978,-11.7402,0	1/1:63:0,63:0:0:63:2264:-203.942,-18.9649,0	0/1:23:5,18:5:180:18:640:-50.9179,0,-9.62745	1/1:45:0,45:0:0:45:1612:-144.957,-13.5464,0	1/1:28:0,28:0:0:28:996:-89.9504,-8.42884,0	1/1:88:2,86:2:72:86:3077:-270.259,-19.6539,0	1/1:70:0,70:0:0:70:2508:-225.724,-21.0721,0	0/1:51:21,30:21:743:30:1072:-81.3312,0,-51.8174	0/1:50:27,23:27:949:23:820:-58.9984,0,-70.6713	0/1:5:2,3:2:72:3:108:-8.54684,0,-5.33157	1/1:47:0,47:0:0:47:1656:-149.272,-14.1484,0	1/1:49:0,49:0:0:49:1751:-157.724,-14.7505,0	1/1:132:0,132:0:0:132:4676:-419.683,-39.736,0	1/1:107:0,107:0:0:107:3848:-346.482,-32.2102,0	1/1:38:0,38:0:0:38:1360:-122.636,-11.4391,0	0/1:60:27,33:27:963:33:1179:-88.3554,0,-68.9241	1/1:125:0,125:0:0:125:4467:-402.073,-37.6288,0	0/1:41:20,21:20:716:21:756:-55.962,0,-52.4255	0/1:72:36,36:36:1271:36:1292:-94.8462,0,-93.0179	1/1:49:0,49:0:0:49:1764:-158.909,-14.7505,0	1/1:41:0,41:0:0:41:1449:-130.675,-12.3422,0	0/1:81:48,33:48:1672:33:1171:-81.2737,0,-126.38	0/1:72:44,28:44:1550:28:984:-67.0249,0,-118.116	1/1:55:0,55:0:0:55:1941:-174.938,-16.5567,0	1/1:91:0,91:0:0:91:3264:-293.932,-27.3937,0
chr04	23360667	.	A	T	234990	PASS	AB=0.502445;ABP=3.39256;AC=142;AF=0.755319;AN=188;AO=10687;CIGAR=1X;DP=14380;DPB=14380;DPRA=0;EPP=20668.7;EPPR=6839.38;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9899;MQMR=60;NS=94;NUMALT=1;ODDS=4.95551;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=381275;QR=132152;RO=3687;RPL=10386;RPP=20668.7;RPPR=6855.44;RPR=301;RUN=1;SAF=0;SAP=23209.5;SAR=10687;SRF=2;SRP=7991.87;SRR=3685;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:23,22:23:819:22:780:-56.9767,0,-60.4852	1/1:218:0,218:0:0:218:7741:-696.725,-65.6245,0	1/1:162:0,162:0:0:162:5759:-518.425,-48.7669,0	1/1:393:0,393:0:0:393:14087:-1267.59,-118.305,0	1/1:81:0,81:0:0:81:2885:-259.885,-24.3834,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:141:60,81:60:2156:81:2903:-219.06,0,-151.862	0/1:305:183,121:183:6549:121:4335:-298.448,0,-497.618	0/1:138:68,70:68:2431:70:2492:-182.992,0,-177.503	1/1:186:1,185:1:36:185:6600:-590.483,-52.3933,0	1/1:90:0,90:0:0:90:3212:-289.304,-27.0927,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:70:0,70:0:0:70:2500:-225.253,-21.0721,0	1/1:91:1,90:1:36:90:3205:-285.075,-23.7955,0	1/1:73:0,73:0:0:73:2577:-232.179,-21.9752,0	0/1:79:36,43:36:1287:43:1540:-115.112,0,-92.3514	1/1:87:0,87:0:0:87:3093:-278.597,-26.1896,0	0/1:72:34,38:34:1224:38:1348:-99.9461,0,-88.7929	0/1:42:21,21:21:756:21:727:-53.1062,0,-55.724	0/1:323:166,157:166:5960:157:5592:-406.171,0,-439.272	0/1:264:93,171:93:3344:171:6108:-470.351,0,-221.704	0/1:286:200,86:200:7147:86:3065:-189.983,0,-557.191	0/1:176:91,85:91:3261:85:3013:-218.421,0,-240.727	1/1:152:6,146:6:216:146:5224:-450.508,-25.966,0	1/1:107:1,106:1:36:106:3784:-337.158,-28.6119,0	0/1:590:312,278:312:11191:278:9868:-710.46,0,-829.465	0/1:328:160,168:160:5735:168:6004:-441.729,0,-417.527	0/1:48:22,26:22:792:26:924:-69.0282,0,-57.1562	0/1:338:168,170:168:6027:170:6051:-442.949,0,-440.784	0/1:257:116,140:116:4164:140:4956:-368.913,0,-297.667	1/1:186:0,186:0:0:186:6626:-596.42,-55.9916,0	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/1:30:17,13:17:612:13:464:-33.0666,0,-46.3825	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:248:0,248:0:0:248:8849:-796.398,-74.6554,0	1/1:318:1,317:1:36:317:11291:-1012.48,-92.1293,0	0/1:90:36,54:36:1296:54:1921:-146.072,0,-89.8512	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:260:108,152:108:3876:152:5444:-411.821,0,-270.766	0/1:49:33,16:33:1184:16:567:-36.6103,0,-92.1178	0/1:201:96,105:96:3436:105:3756:-277.733,0,-248.946	0/1:96:52,44:52:1868:44:1572:-112.873,0,-139.5	1/1:85:0,85:0:0:85:3032:-273.11,-25.5876,0	0/1:152:65,87:65:2324:87:3128:-235.989,0,-163.664	0/1:237:118,119:118:4223:119:4266:-312.773,0,-308.905	0/1:319:145,174:145:5216:174:6220:-463.869,0,-373.547	0/1:225:109,116:109:3901:116:4121:-303.344,0,-283.55	1/1:297:2,295:2:72:295:10552:-942.757,-82.5692,0	1/1:184:1,183:1:36:183:6556:-586.523,-51.7912,0	1/1:36:0,36:0:0:36:1269:-114.511,-10.8371,0	1/1:221:0,221:0:0:221:7904:-711.387,-66.5276,0	0/1:51:27,24:27:972:24:856:-62.0086,0,-72.4454	1/1:50:0,50:0:0:50:1773:-159.851,-15.0515,0	0/1:235:116,119:116:4118:119:4244:-311.398,0,-300.065	0/1:37:21,16:21:737:16:576:-41.0369,0,-55.5125	0/1:23:7,16:7:252:16:568:-44.5282,0,-16.1053	0/1:23:8,15:8:288:15:528:-40.9277,0,-19.3437	0/1:147:73,74:73:2607:74:2644:-193.956,0,-190.626	1/1:152:3,149:3:108:149:5321:-468.948,-35.6814,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:493:233,260:233:8355:260:9248:-683.882,0,-603.546	1/1:337:6,330:6:216:330:11808:-1042.79,-81.7154,0	0/1:115:60,54:60:2160:54:1940:-140.238,0,-160.029	1/1:142:0,142:0:0:142:5042:-453.93,-42.7463,0	0/1:234:113,121:113:4064:121:4310:-317.635,0,-295.504	1/1:161:2,159:2:72:159:5671:-503.673,-41.6291,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:124:0,124:0:0:124:4401:-396.264,-37.3277,0	1/1:93:0,92:0:0:92:3263:-293.531,-27.6948,0	0/1:43:19,24:19:669:24:848:-63.6954,0,-47.5897	1/1:151:0,151:0:0:151:5397:-485.839,-45.4555,0	1/1:96:0,96:0:0:96:3432:-309.09,-28.8989,0	1/1:295:0,295:0:0:295:10559:-950.204,-88.8039,0	1/1:277:0,277:0:0:277:9924:-893.099,-83.3853,0	0/1:152:77,75:77:2772:75:2663:-194.157,0,-203.964	0/1:197:93,104:93:3328:104:3693:-273.27,0,-240.435	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	1/1:192:0,192:0:0:192:6846:-616.211,-57.7978,0	1/1:187:0,187:0:0:187:6684:-601.638,-56.2926,0	1/1:356:0,356:0:0:356:12707:-1143.44,-107.167,0	1/1:133:1,132:1:36:132:4668:-416.689,-36.4387,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	0/1:126:57,69:57:2044:69:2459:-183.634,0,-146.302	1/1:205:1,204:1:36:204:7273:-651.023,-58.1129,0	0/1:57:38,19:38:1368:19:680:-44.3705,0,-106.262	0/1:101:61,40:61:2175:40:1436:-99.1336,0,-165.612	1/1:98:1,97:1:36:97:3492:-310.891,-25.9027,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:92:41,51:41:1476:51:1812:-135.664,0,-105.441	0/1:91:56,35:56:2012:35:1252:-85.5913,0,-153.959	1/1:214:0,213:0:0:213:7578:-681.702,-64.1194,0	1/1:112:0,112:0:0:112:4000:-360.191,-33.7154,0
chr04	23365404	.	A	G	61752.8	PASS	AB=0.426166;ABP=101.451;AC=138;AF=0.741935;AN=186;AO=3009;CIGAR=1X;DP=4214;DPB=4214;DPRA=18.5011;EPP=6536.97;EPPR=2600.12;GTI=1;LEN=1;MEANALT=1.01099;MQM=59.7212;MQMR=59.5257;NS=93;NUMALT=1;ODDS=3.08722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106610;QR=43035;RO=1204;RPL=3009;RPP=6536.97;RPPR=2600.12;RPR=0;RUN=1;SAF=3009;SAP=6536.97;SAR=0;SRF=1204;SRP=2617.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:7,16:7:252:16:567:-44.437,0,-16.0874	1/1:37:0,37:0:0:37:1315:-118.651,-11.1381,0	1/1:54:0,54:0:0:54:1921:-173.166,-16.2556,0	1/1:51:0,51:0:0:51:1820:-164.077,-15.3525,0	1/1:36:1,35:1:36:35:1248:-109.015,-7.23881,0	1/1:22:0,22:0:0:22:766:-69.2548,-6.62266,0	0/1:70:31,39:31:1116:39:1396:-104.866,0,-79.6666	0/1:59:39,20:39:1404:20:705:-45.9754,0,-108.899	0/1:61:31,30:31:1107:30:1060:-77.3478,0,-81.5421	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	1/1:26:0,26:0:0:26:924:-83.4666,-7.82678,0	1/1:32:0,32:0:0:32:1140:-102.9,-9.63296,0	1/1:47:0,47:0:0:47:1628:-146.803,-14.1484,0	1/1:63:0,63:0:0:63:2229:-200.873,-18.9649,0	1/1:31:0,31:0:0:31:1099:-99.2171,-9.33193,0	0/1:26:14,12:14:504:12:417:-30.0334,0,-37.8675	1/1:43:0,43:0:0:43:1495:-134.84,-12.9443,0	0/1:22:8,14:8:269:14:495:-38.2595,0,-17.9134	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:123:73,50:73:2616:50:1792:-124.532,0,-198.66	0/1:74:45,29:45:1581:29:1028:-70.5284,0,-120.216	0/1:135:99,36:99:3536:36:1292:-75.9341,0,-277.789	0/1:20:9,11:9:320:11:383:-28.7826,0,-23.1218	1/1:45:4,41:4:144:41:1453:-117.751,-0.232733,0	1/1:45:0,45:0:0:45:1608:-144.999,-13.5464,0	0/1:128:77,51:77:2756:51:1802:-123.928,0,-209.7	0/1:104:59,45:59:2105:45:1586:-111.493,0,-158.375	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3372	0/1:109:66,43:66:2368:43:1548:-106.797,0,-180.391	0/1:66:36,30:36:1264:30:1072:-76.9245,0,-94.1914	1/1:61:0,61:0:0:61:2156:-194.067,-18.3628,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2737	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:88:0,88:0:0:88:3151:-283.766,-26.4906,0	1/1:69:0,69:0:0:69:2453:-221.024,-20.7711,0	0/1:25:10,15:10:360:15:512:-38.8759,0,-25.2186	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:42:20,22:20:711:22:775:-57.4279,0,-51.6277	0/1:29:15,14:15:536:14:470:-33.8879,0,-39.8449	0/1:94:56,38:56:1991:38:1356:-94.0437,0,-149.601	0/1:29:14,15:14:478:15:512:-37.5999,0,-34.6119	1/1:31:0,31:0:0:31:1093:-98.6706,-9.33193,0	0/1:34:16,18:16:576:18:640:-47.6943,0,-41.9175	0/1:51:33,18:33:1184:18:631:-41.7632,0,-91.5154	0/1:72:48,24:48:1720:24:856:-55.6856,0,-133.389	0/1:51:25,26:25:896:26:932:-68.8463,0,-65.6019	1/1:30:0,30:0:0:30:1068:-96.4317,-9.0309,0	1/1:86:1,85:1:36:85:3019:-268.153,-22.2903,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:52:0,52:0:0:52:1839:-165.79,-15.6536,0	0/1:22:16,6:16:563:6:205:-12.1154,0,-44.3765	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:36:23,13:23:828:13:464:-31.2604,0,-64.007	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8075	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26857	0/1:29:19,10:19:684:10:360:-24.0144,0,-53.1605	1/1:106:0,106:0:0:106:3743:-337.065,-31.9092,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:89:42,47:42:1508:47:1672:-123.438,0,-109.182	1/1:60:0,60:0:0:60:2135:-192.411,-18.0618,0	0/1:38:16,22:16:576:22:784:-59.4448,0,-40.7358	1/1:18:0,18:0:0:18:630:-57.0231,-5.41854,0	0/1:51:37,13:37:1328:13:468:-27.0128,0,-104.388	1/1:62:0,62:0:0:62:2211:-198.933,-18.6639,0	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	1/1:81:0,81:0:0:81:2870:-258.438,-24.3834,0	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1418	1/1:63:0,63:0:0:63:2228:-200.783,-18.9649,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:74:0,74:0:0:74:2600:-234.248,-22.2762,0	1/1:74:0,74:0:0:74:2643:-238.08,-22.2762,0	0/1:58:34,24:34:1215:24:856:-59.899,0,-92.1731	0/1:27:17,10:17:612:10:352:-23.8904,0,-47.2856	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:76:0,76:0:0:76:2696:-242.883,-22.8783,0	1/1:87:0,87:0:0:87:3100:-279.141,-26.1896,0	1/1:73:0,73:0:0:73:2519:-226.862,-21.9752,0	1/1:23:1,22:1:36:22:755:-64.6648,-3.32542,0	0/1:36:19,17:19:684:17:584:-41.4843,0,-51.0532	1/1:77:0,77:0:0:77:2726:-245.534,-23.1793,0	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:46:28,18:28:995:18:644:-44.4294,0,-75.9795	1/1:27:0,27:0:0:27:951:-85.9043,-8.12781,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:57:32,25:32:1152:25:850:-59.648,0,-86.3799	0/1:29:20,9:20:720:9:320:-20.4125,0,-56.3989	1/1:27:0,27:0:0:27:951:-85.8685,-8.12781,0	1/1:46:0,46:0:0:46:1628:-146.309,-13.8474,0
chr04	23365708	.	G	C	70242.6	PASS	AB=0.520688;ABP=11.0067;AC=138;AF=0.75;AN=184;AO=3514;CIGAR=1X;DP=4561;DPB=4561;DPRA=8.34249;EPP=382.836;EPPR=84.7093;GTI=2;LEN=1;MEANALT=1.05495;MQM=38.6707;MQMR=26.3551;NS=92;NUMALT=1;ODDS=4.13359;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124993;QR=36809;RO=1042;RPL=1365;RPP=382.836;RPPR=84.7093;RPR=2149;RUN=1;SAF=0;SAP=7633.56;SAR=3514;SRF=0;SRP=2265.68;SRR=1042;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:13,6:13:447:6:201:-11.6594,0,-25.1175	1/1:50:0,50:0:0:50:1784:-141.215,-15.0515,0	1/1:59:0,59:0:0:59:2092:-168.08,-17.7608,0	1/1:130:1,129:1:36:129:4600:-334.693,-36.855,0	1/1:12:0,12:0:0:12:424:-33.3548,-3.61236,0	1/1:6:0,6:0:0:6:212:-13.5261,-1.80618,0	0/1:23:3,20:3:108:20:707:-54.4695,0,-1.03404	0/1:88:52,36:52:1842:36:1284:-67.754,0,-95.4319	0/1:50:18,32:18:631:32:1144:-72.5032,0,-27.5545	1/1:46:0,46:0:0:46:1640:-121.061,-13.8474,0	1/1:25:0,25:0:0:25:896:-62.11,-7.52575,0	1/1:57:0,57:0:0:57:2031:-155.451,-17.1587,0	1/1:43:0,43:0:0:43:1523:-115.633,-12.9443,0	1/1:43:0,43:0:0:43:1531:-104.576,-12.9443,0	1/1:43:0,43:0:0:43:1536:-110.441,-12.9443,0	0/1:42:13,29:13:455:29:1025:-55.6494,0,-16.656	1/1:14:0,14:0:0:14:495:-35.4756,-4.21442,0	0/1:18:8,10:8:284:10:360:-21.1485,0,-13.4585	0/1:7:4,3:4:144:3:93:-4.54331,0,-7.84244	0/1:71:30,41:30:1047:41:1451:-86.0887,0,-49.21	0/1:101:48,53:48:1671:53:1879:-123.705,0,-81.9466	0/1:48:32,16:32:1140:16:568:-20.0164,0,-57.4458	0/1:42:21,21:21:752:21:737:-37.3613,0,-34.2763	1/1:32:1,31:1:36:31:1116:-74.4838,-7.35409,0	1/1:18:0,18:0:0:18:640:-53.2285,-5.41854,0	0/1:187:94,93:94:3327:93:3308:-134.397,0,-149.203	0/1:107:47,60:47:1668:60:2136:-115.294,0,-78.4969	0/1:13:5,8:5:180:8:288:-13.5738,0,-7.86086	0/1:148:65,82:65:2261:82:2917:-132.686,0,-101.847	0/1:82:38,44:38:1352:44:1568:-78.8094,0,-59.4685	1/1:78:0,78:0:0:78:2788:-188.151,-23.4803,0	0/0:6:6,0:6:207:0:0:0,-1.80618,-13.9857	0/1:8:4,4:4:135:4:144:-6.97841,0,-6.92796	1/1:8:0,8:0:0:8:284:-22.8062,-2.40824,0	1/1:4:0,4:0:0:4:144:-11.2206,-1.20412,0	.:.:.:.:.:.:.:.	1/1:121:0,121:0:0:121:4288:-258.54,-36.4246,0	1/1:43:0,43:0:0:43:1536:-101.239,-12.9443,0	0/1:12:5,7:5:172:7:248:-13.1685,0,-8.055	.:.:.:.:.:.:.:.	0/1:44:22,22:22:775:22:788:-45.1981,0,-38.0131	0/1:7:3,4:3:108:4:131:-6.42586,0,-5.5838	0/1:63:35,28:35:1256:28:1000:-47.9847,0,-61.6408	0/1:16:4,12:4:126:12:424:-30.164,0,-4.58192	1/1:29:0,29:0:0:29:1036:-69.5561,-8.72987,0	0/1:30:13,17:13:468:17:599:-26.3142,0,-18.8665	0/1:34:20,14:20:720:14:504:-31.3578,0,-36.6463	0/1:83:40,43:40:1420:43:1532:-88.4852,0,-71.7758	0/1:70:29,41:29:1044:41:1472:-87.4389,0,-51.6087	1/1:101:0,101:0:0:101:3604:-257.901,-30.404,0	1/1:64:0,64:0:0:64:2284:-136.045,-19.2659,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:46:0,46:0:0:46:1640:-130.681,-13.8474,0	0/1:25:14,10:14:500:10:356:-12.9122,0,-22.7864	1/1:12:0,12:0:0:12:424:-32.3305,-3.61236,0	0/1:69:29,40:29:1032:40:1412:-74.8966,0,-44.1091	0/1:27:13,14:13:460:14:504:-29.868,0,-22.5421	0/1:5:3,2:3:108:2:72:-3.35639,0,-4.87567	0/1:14:7,7:7:248:7:248:-10.3837,0,-10.6464	0/1:27:16,11:16:572:11:396:-20.1361,0,-29.756	1/1:58:0,58:0:0:58:2068:-139.55,-17.4597,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:169:102,67:102:3615:67:2396:-85.7055,0,-175.327	1/1:129:3,125:3:104:125:4459:-297.78,-31.0791,0	0/1:31:12,19:12:419:19:680:-39.3866,0,-19.6536	1/1:39:0,39:0:0:39:1389:-94.7024,-11.7402,0	0/1:92:37,54:37:1301:54:1919:-118.571,0,-67.6932	1/1:69:1,68:1:36:68:2415:-166.961,-17.6474,0	1/1:15:0,15:0:0:15:522:-34.4768,-4.51545,0	1/1:22:0,22:0:0:22:780:-61.9518,-6.62266,0	1/1:30:0,30:0:0:30:1064:-62.0729,-9.0309,0	0/1:31:15,16:15:527:16:576:-32.5834,0,-26.0718	1/1:53:1,52:1:36:52:1868:-139.869,-14.6567,0	1/1:51:0,51:0:0:51:1797:-139.843,-15.3525,0	1/1:106:0,106:0:0:106:3765:-291.445,-31.9092,0	1/1:107:0,107:0:0:107:3803:-283.216,-32.2102,0	0/1:27:10,17:10:356:17:604:-43.4881,0,-14.9105	0/1:86:49,37:49:1735:37:1324:-80.2967,0,-90.8714	0/1:7:4,3:4:144:3:108:-6.91201,0,-7.36	1/1:64:1,63:1:32:63:2247:-162.259,-17.0172,0	1/1:56:0,55:0:0:55:1947:-160.866,-16.5567,0	1/1:142:0,142:0:0:142:5062:-370.827,-42.7463,0	1/1:50:0,50:0:0:50:1788:-126.899,-15.0515,0	1/1:42:0,42:0:0:42:1490:-98.0751,-12.6433,0	0/1:21:7,14:7:237:14:473:-29.167,0,-8.96651	1/1:73:0,73:0:0:73:2603:-183.834,-21.9752,0	0/1:13:6,7:6:216:7:237:-15.6769,0,-10.238	0/1:27:11,16:11:383:16:567:-32.8095,0,-17.8611	1/1:27:0,27:0:0:27:946:-71.7893,-8.12781,0	1/1:19:0,19:0:0:19:680:-45.1262,-5.71957,0	0/1:53:18,35:18:616:35:1227:-67.6428,0,-24.5588	0/1:14:9,5:9:320:5:180:-7.12999,0,-17.3934	1/1:102:0,102:0:0:102:3623:-269.315,-30.7051,0	1/1:54:0,54:0:0:54:1910:-132.613,-16.2556,0
chr04	23368314	.	TGTAT	TGTAA,CGTAA	87699.4	PASS	AB=0.454726,0.538665;ABP=56.8852,42.3035;AC=142,46;AF=0.755319,0.244681;AN=188;AO=4144,1635;CIGAR=4M1X,1X3M1X;DP=5817;DPB=5817;DPRA=0,1.13534;EPP=9001.59,3553.37;EPPR=11.6962;GTI=1;LEN=1,5;MEANALT=1.8617,2.32;MQM=30.8308,28.2765;MQMR=34.25;NS=94;NUMALT=2;ODDS=1.09311;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=148234,57562;QR=130;RO=4;RPL=0,0;RPP=9001.59,3553.37;RPPR=11.6962;RPR=4144,1635;RUN=1,1;SAF=0,0;SAP=9001.59,3553.37;SAR=4144,1635;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:47:0,16,31:0:0:16,31:576,1074:-105.444,-67.629,-62.8125,-38.1034,0,-28.7715	1/1:49:0,48,0:0:0:48,0:1728,0:-129.555,-14.4494,0,-129.555,-14.4494,-129.555	1/1:88:0,88,0:0:0:88,0:3160,0:-236.054,-26.4906,0,-236.054,-26.4906,-236.054	1/1:67:0,66,1:0:0:66,1:2345,36:-175.281,-19.868,0,-173.043,-17.3479,-172.742	1/1:14:0,14,0:0:0:14,0:504,0:-37.4727,-4.21442,0,-37.4727,-4.21442,-37.4727	1/1:22:0,22,0:0:0:22,0:792,0:-59.317,-6.62266,0,-59.317,-6.62266,-59.317	1/2:54:0,24,30:0:0:24,30:860,1069:-123.51,-66.4626,-59.2379,-57.336,0,-48.3051	1/2:69:0,36,33:0:0:36,33:1268,1151:-158.533,-72.9585,-62.1214,-85.8618,0,-75.9278	1/2:79:0,47,32:0:0:47,32:1684,1118:-182.55,-70.6211,-56.4727,-112.215,0,-102.582	1/1:56:0,55,0:0:0:55,0:1972,0:-147.337,-16.5567,0,-147.337,-16.5567,-147.337	1/1:28:0,28,0:0:0:28,0:1000,0:-75.17,-8.42884,0,-75.17,-8.42884,-75.17	1/1:78:0,77,0:0:0:77,0:2725,0:-204.189,-23.1793,0,-204.189,-23.1793,-204.189	1/1:46:0,44,0:0:0:44,0:1584,0:-117.555,-13.2453,0,-117.555,-13.2453,-117.555	1/1:26:0,26,0:0:0:26,0:932,0:-69.3373,-7.82678,0,-69.3373,-7.82678,-69.3373	1/1:39:0,39,0:0:0:39,0:1392,0:-103.023,-11.7402,0,-103.023,-11.7402,-103.023	1/2:52:0,28,24:0:0:28,24:991,858:-119.156,-52.932,-44.5032,-66.5103,0,-59.2856	1/1:30:0,30,0:0:0:30,0:1080,0:-81.1838,-9.0309,0,-81.1838,-9.0309,-81.1838	1/2:13:0,7,6:0:0:7,6:252,205:-29.5556,-13.2541,-11.1469,-16.5837,0,-14.7776	1/2:12:0,3,9:0:0:3,9:108,322:-27.5393,-20.3903,-19.4872,-7.44302,0,-4.73375	1/2:98:0,50,47:0:0:50,47:1796,1668:-222.859,-105.153,-90.1012,-117.774,0,-103.625	1/2:110:0,48,59:0:0:48,59:1715,2093:-245.638,-130.857,-116.407,-114.795,0,-97.0339	1/2:138:0,40,96:0:0:40,96:1440,3380:-280.51,-193.543,-181.501,-86.9964,0,-58.0975	1/2:85:0,34,51:0:0:34,51:1215,1803:-192.731,-111.587,-101.352,-81.4332,0,-66.0807	1/1:63:0,61,2:0:0:61,2:2184,72:-161.717,-18.3628,0,-157.241,-13.6048,-156.639	1/1:43:0,43,0:0:0:43,0:1540,0:-113.882,-12.9443,0,-113.882,-12.9443,-113.882	1/2:151:0,79,70:0:0:79,70:2824,2484:-311.776,-140.512,-116.73,-171.297,0,-150.225	1/2:256:1,132,123:1:31:132,123:4715,4379:-582.556,-271.336,-233.818,-309.311,0,-274.503	1/2:16:1,6,9:1:36:6,9:216,324:-30.6917,-16.8624,-17.871,-11.2647,0,-11.3707	1/2:173:0,78,94:0:0:78,94:2796,3265:-357.429,-187.518,-164.038,-170.019,0,-141.722	1/2:72:0,35,36:0:0:35,36:1252,1265:-161.386,-79.3271,-68.791,-82.0651,0,-71.228	1/1:42:0,42,0:0:0:42,0:1508,0:-111.963,-12.6433,0,-111.963,-12.6433,-111.963	1/2:11:0,6,5:0:0:6,5:216,180:-25.7704,-11.4718,-9.66564,-14.588,0,-13.0828	1/2:22:0,11,11:0:0:11,11:392,386:-51.246,-25.1629,-21.8516,-26.3739,0,-23.0626	1/1:3:0,3,0:0:0:3,0:104,0:-8.22057,-0.90309,0,-8.22057,-0.90309,-8.22057	1/1:6:0,6,0:0:0:6,0:212,0:-16.2708,-1.80618,0,-16.2708,-1.80618,-16.2708	1/1:11:0,11,0:0:0:11,0:392,0:-29.1421,-3.31133,0,-29.1421,-3.31133,-29.1421	1/1:104:0,103,0:0:0:103,0:3692,0:-251.66,-31.0061,0,-251.66,-31.0061,-251.66	1/1:56:0,56,0:0:0:56,0:2008,0:-149.375,-16.8577,0,-149.375,-16.8577,-149.375	1/2:26:0,10,16:0:0:10,16:360,565:-59.9265,-36.1039,-33.0936,-24.1145,0,-19.2981	1/2:3:0,1,2:0:0:1,2:36,71:-7.12789,-4.74061,-4.43958,-2.67972,0,-2.07766	1/2:129:0,59,68:0:0:59,68:2088,2388:-289.504,-150.409,-132.648,-139.118,0,-118.648	1/2:33:0,10,23:0:0:10,23:360,807:-75.5132,-51.6918,-48.6815,-24.1145,0,-17.1909	1/2:117:0,52,65:0:0:52,65:1859,2271:-264.859,-143.205,-127.551,-121.941,0,-102.374	1/2:20:0,14,6:0:0:14,6:504,212:-46.4264,-13.2103,-8.99587,-33.4963,0,-31.6901	1/1:43:0,42,0:0:0:42,0:1504,0:-113.296,-12.6433,0,-113.296,-12.6433,-113.296	1/2:89:0,40,49:0:0:40,49:1426,1746:-185.356,-98.5302,-86.489,-87.0926,0,-72.3422	1/2:70:0,33,37:0:0:33,37:1184,1315:-161.153,-81.8618,-71.9278,-79.5815,0,-68.4434	1/2:144:0,70,73:0:0:70,73:2507,2549:-326.433,-160.617,-139.545,-165.906,0,-143.931	1/2:94:0,43,50:0:0:43,50:1526,1753:-212.416,-110.358,-97.4136,-102.139,0,-87.0872	1/1:92:0,90,0:0:0:90,0:3215,0:-241.174,-27.0927,0,-241.174,-27.0927,-241.174	1/1:97:0,96,0:0:0:96,0:3447,0:-236.003,-28.8989,0,-236.003,-28.8989,-236.003	1/1:9:0,9,0:0:0:9,0:315,0:-24.054,-2.70927,0,-24.054,-2.70927,-24.054	1/1:136:0,135,0:0:0:135,0:4835,0:-360.359,-40.6391,0,-360.359,-40.6391,-360.359	1/2:22:0,4,18:0:0:4,18:144,635:-44.8797,-36.2302,-35.0261,-8.91983,0,-3.50129	1/1:6:0,6,0:0:0:6,0:216,0:-16.9519,-1.80618,0,-16.9519,-1.80618,-16.9519	1/2:126:0,50,76:0:0:50,76:1791,2652:-285.355,-166.621,-151.569,-119.024,0,-96.1455	1/2:40:0,15,24:0:0:15,24:526,840:-88.5531,-53.5161,-49.0006,-35.0612,0,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chr04	23504128	.	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chr04	23523632	.	A	G	78934.6	PASS	AB=0.50941;ABP=4.84938;AC=139;AF=0.755435;AN=184;AO=3744;CIGAR=1X;DP=4927;DPB=4927;DPRA=10.8176;EPP=8115.64;EPPR=2565.35;GTI=1;LEN=1;MEANALT=1.03297;MQM=59.9722;MQMR=59.9966;NS=92;NUMALT=1;ODDS=1.02944;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133678;QR=42321;RO=1180;RPL=2;RPP=8115.64;RPPR=2565.35;RPR=3742;RUN=1;SAF=3744;SAP=8133;SAR=0;SRF=1180;SRP=2565.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:16,7:16:576:7:248:-15.7405,0,-45.2513	1/1:30:0,30:0:0:30:1069:-96.521,-9.0309,0	1/1:89:0,89:0:0:89:3159:-284.531,-26.7917,0	1/1:108:0,107:0:0:107:3812:-342.917,-32.2102,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:9:0,9:0:0:9:305:-27.7772,-2.70927,0	0/1:119:63,56:63:2268:56:2008:-145.171,0,-168.559	0/1:62:30,32:30:1061:32:1152:-85.3263,0,-77.1355	0/1:62:35,27:35:1256:27:945:-66.6984,0,-94.6814	1/1:70:0,70:0:0:70:2489:-224.262,-21.0721,0	1/1:30:0,30:0:0:30:1049:-94.7169,-9.0309,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:60:0,60:0:0:60:2132:-192.146,-18.0618,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	0/1:24:9,15:9:324:15:528:-40.6266,0,-22.2811	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:99:49,50:49:1764:50:1781:-130.769,0,-129.242	0/1:113:54,59:54:1932:59:2109:-156.061,0,-140.14	0/1:55:28,27:28:985:27:971:-71.1512,0,-72.4049	0/1:46:21,25:21:756:25:900:-67.4736,0,-54.5198	1/1:19:1,18:1:36:18:640:-54.331,-2.1213,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:196:83,113:83:2980:113:4024:-303.338,0,-209.43	0/1:151:84,67:84:3012:67:2388:-169.72,0,-225.855	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/1:130:62,68:62:2224:68:2436:-180.361,0,-161.288	0/1:68:28,40:28:1008:40:1423:-107.896,0,-70.5663	1/1:74:0,74:0:0:74:2641:-237.866,-22.2762,0	0/1:10:2,8:2:72:8:273:-21.8899,0,-3.82642	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:122:0,122:0:0:122:4380:-394.372,-36.7257,0	1/1:37:1,36:1:36:36:1292:-112.985,-7.53984,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	.:.:.:.:.:.:.:.	0/1:85:42,43:42:1497:43:1547:-113.936,0,-109.435	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:60:26,34:26:921:34:1220:-92.045,0,-65.1434	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	0/1:61:36,25:36:1292:25:885:-61.6037,0,-98.2209	0/1:48:17,31:17:612:31:1087:-83.689,0,-40.964	0/1:77:43,34:43:1548:34:1205:-85.5746,0,-116.434	0/1:68:35,33:35:1241:33:1184:-86.3983,0,-91.5225	1/1:64:0,63:0:0:63:2243:-201.772,-18.9649,0	1/1:96:0,96:0:0:96:3448:-310.53,-28.8989,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:60:33,27:33:1184:27:955:-68.2031,0,-88.8065	0/1:30:23,7:23:828:7:248:-13.6333,0,-65.8132	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:47:19,28:19:684:28:1000:-76.167,0,-47.7419	1/1:76:0,76:0:0:76:2723:-245.312,-22.8783,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:134:64,70:64:2304:70:2486:-183.654,0,-167.282	1/1:136:0,136:0:0:136:4853:-436.924,-40.9401,0	0/1:37:21,16:21:756:16:572:-40.6753,0,-57.2291	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:94:54,40:54:1940:40:1428:-100.521,0,-146.579	1/1:56:0,56:0:0:56:1992:-179.552,-16.8577,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:14:0,14:0:0:14:504:-45.6696,-4.21442,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	1/1:73:1,72:1:36:72:2565:-227.5,-18.3769,0	1/1:87:0,87:0:0:87:3098:-279.046,-26.1896,0	1/1:70:0,70:0:0:70:2516:-226.321,-21.0721,0	1/1:155:0,155:0:0:155:5553:-499.892,-46.6597,0	0/1:10:3,7:3:108:7:244:-19.2886,0,-7.06487	0/1:72:26,46:26:936:46:1648:-126.934,0,-62.8853	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	1/1:111:0,111:0:0:111:3972:-357.67,-33.4143,0	1/1:86:0,86:0:0:86:3061:-275.718,-25.8886,0	1/1:127:0,127:0:0:127:4512:-406.248,-38.2308,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:54:26,27:26:936:27:972:-71.4835,0,-68.245	1/1:39:0,39:0:0:39:1382:-124.673,-11.7402,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:50:23,27:23:828:27:960:-71.6648,0,-59.7926	0/1:38:23,15:23:824:15:540:-37.4974,0,-63.0442	1/1:101:0,101:0:0:101:3598:-324.024,-30.404,0	1/1:56:0,56:0:0:56:1995:-179.823,-16.8577,0
chr04	23538545	.	A	G	76968.7	PASS	AB=0.335172;ABP=773.255;AC=143;AF=0.760638;AN=188;AO=3813;CIGAR=1X;DP=6000;DPB=6000;DPRA=64.5054;EPP=8265.47;EPPR=4706.52;GTI=9;LEN=1;MEANALT=1.01075;MQM=59.9892;MQMR=59.9835;NS=94;NUMALT=1;ODDS=0.0931411;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136055;QR=78344;RO=2186;RPL=2;RPP=8265.47;RPPR=4706.52;RPR=3811;RUN=1;SAF=3813;SAP=8282.83;SAR=0;SRF=2186;SRP=4749.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:92:77,15:77:2772:15:540:-21.2418,0,-222.026	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:90:0,90:0:0:90:3206:-288.762,-27.0927,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:18:1,17:1:36:17:612:-51.8152,-1.82027,0	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	0/1:85:51,34:51:1828:34:1224:-84.8795,0,-139.213	0/1:83:57,26:57:2040:26:896:-55.9652,0,-158.887	0/1:110:81,29:81:2908:29:1022:-59.1776,0,-228.215	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:56:0,56:0:0:56:1982:-178.653,-16.8577,0	1/1:65:0,65:0:0:65:2319:-208.97,-19.567,0	1/1:39:0,39:0:0:39:1383:-124.768,-11.7402,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:58:32,26:32:1148:26:915:-65.2058,0,-86.1701	1/1:21:0,21:0:0:21:747:-67.5543,-6.32163,0	0/1:28:19,9:19:684:9:324:-21.077,0,-53.4615	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5887	0/1:86:53,33:53:1900:33:1180:-80.6195,0,-145.389	0/1:180:110,70:110:3929:70:2483:-169.537,0,-299.616	0/1:51:44,7:44:1580:7:248:-7.31166,0,-127.139	0/1:84:64,20:64:2292:20:720:-39.8423,0,-181.255	1/1:46:4,42:4:144:42:1503:-122.25,-0.533763,0	1/1:29:1,28:1:36:28:996:-86.3566,-5.1316,0	0/1:147:112,35:112:4013:35:1260:-69.4541,0,-317.105	0/1:180:111,69:111:3980:69:2446:-166.209,0,-304.204	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/1:187:130,57:130:4657:57:2044:-127.939,0,-362.997	0/1:82:58,24:58:2076:24:851:-52.225,0,-162.426	1/1:63:0,63:0:0:63:2236:-201.502,-18.9649,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:4,8:4:140:8:284:-22.291,0,-9.33222	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:136:0,136:0:0:136:4863:-437.822,-40.9401,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:120:67,53:67:2404:53:1886:-133.891,0,-180.493	0/1:25:9,16:9:320:16:576:-44.6492,0,-21.6166	0/1:62:44,18:44:1563:18:648:-39.988,0,-122.297	0/1:61:36,25:36:1292:25:887:-61.7853,0,-98.2209	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:102:87,14:87:3108:14:504:-15.0461,0,-249.302	0/1:109:81,28:81:2896:28:1004:-57.8636,0,-228.064	0/1:89:69,20:69:2484:20:712:-37.615,0,-197.021	0/1:73:49,24:49:1752:24:860:-55.7466,0,-135.989	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:106:0,106:0:0:106:3772:-339.625,-31.9092,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/1:38:30,8:30:1080:8:284:-14.4642,0,-86.0741	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:149:106,43:106:3812:43:1531:-93.2289,0,-298.422	0/1:41:25,16:25:896:16:572:-39.4688,0,-68.6181	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/1:67:42,25:42:1512:25:883:-59.6184,0,-116.206	1/1:68:1,67:1:36:67:2412:-213.738,-16.8718,0	1/1:7:0,7:0:0:7:244:-22.2989,-2.10721,0	0/1:181:97,84:97:3469:84:3020:-217.539,0,-257.934	1/1:72:1,71:1:36:71:2552:-226.332,-18.0759,0	0/1:53:27,26:27:972:26:915:-66.7104,0,-71.8433	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	0/1:140:102,38:102:3653:38:1355:-80.1055,0,-286.828	1/1:81:5,76:5:180:76:2698:-226.512,-7.83137,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:17:7,10:7:252:10:352:-26.9007,0,-17.9114	1/1:73:0,73:0:0:73:2589:-233.259,-21.9752,0	1/1:106:1,105:1:36:105:3727:-332.034,-28.3109,0	1/1:89:0,89:0:0:89:3171:-285.615,-26.7917,0	1/1:143:0,143:0:0:143:5124:-461.3,-43.0473,0	0/1:62:47,15:47:1684:15:532:-29.5492,0,-133.183	0/1:62:27,35:27:968:35:1248:-93.961,0,-68.7735	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:85:2,83:2:72:83:2955:-259.346,-18.7508,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:163:0,163:0:0:163:5824:-524.274,-49.0679,0	1/1:43:0,43:0:0:43:1531:-138.082,-12.9443,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/1:33:18,15:18:648:15:536:-38.6408,0,-48.7179	1/1:72:0,72:0:0:72:2571:-231.64,-21.6742,0	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5887	0/1:64:28,36:28:1000:36:1279:-96.1465,0,-71.0495	1/1:57:0,57:0:0:57:2023:-182.342,-17.1587,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:74:42,32:42:1508:32:1139:-80.5422,0,-113.737	0/1:80:66,14:66:2364:14:495:-20.8006,0,-188.936	1/1:111:0,111:0:0:111:3964:-356.952,-33.4143,0	1/1:79:0,79:0:0:79:2799:-252.151,-23.7814,0
chr04	23598975	.	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chr04	23617138	.	C	T	56085	PASS	AB=0.50956;ABP=8.11713;AC=48;AF=0.258065;AN=186;AO=3290;CIGAR=1X;DP=12779;DPB=12779;DPRA=1.19293;EPP=7147.15;EPPR=20592.9;GTI=2;LEN=1;MEANALT=1.05882;MQM=59.997;MQMR=59.9797;NS=93;NUMALT=1;ODDS=0.873734;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117808;QR=338052;RO=9486;RPL=3290;RPP=7147.15;RPPR=20601.6;RPR=0;RUN=1;SAF=0;SAP=7147.15;SAR=3290;SRF=1;SRP=20592.9;SRR=9485;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:13,34:13:453:34:1209:-94.9657,0,-26.9512	0/0:276:276,0:276:9797:0:0:0,-83.0843,-881.679	0/0:136:136,0:136:4812:0:0:0,-40.9401,-433.223	0/0:303:302,1:302:10772:1:36:0,-87.6138,-965.785	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:55:55,0:55:1950:0:0:0,-16.5566,-175.772	0/1:163:81,82:81:2863:82:2952:-216.845,0,-208.836	0/1:267:93,173:93:3302:173:6197:-477.391,0,-216.963	0/1:145:67,78:67:2404:78:2800:-208.59,0,-172.967	0/0:215:213,1:213:7580:1:36:0,-61.1071,-678.679	0/0:91:91,0:91:3244:0:0:0,-27.3937,-292.18	0/0:98:98,0:98:3505:0:0:0,-29.5009,-315.659	0/0:93:93,0:93:3293:0:0:0,-27.9958,-296.588	0/0:116:116,0:116:4137:0:0:0,-34.9195,-372.513	0/0:115:115,0:115:4117:0:0:0,-34.6184,-370.713	0/1:61:22,39:22:792:39:1404:-108.296,0,-53.2428	0/0:96:96,0:96:3406:0:0:0,-28.8989,-306.753	0/1:108:53,55:53:1896:55:1968:-144.884,0,-138.407	0/1:48:29,19:29:1036:19:684:-47.4409,0,-79.1045	0/1:209:119,90:119:4241:90:3217:-226.836,0,-318.954	0/1:210:104,106:104:3709:106:3793:-278.35,0,-270.795	0/1:68:21,47:21:752:47:1669:-130.025,0,-47.5362	0/1:133:76,57:76:2705:57:2033:-143.203,0,-203.656	0/0:285:281,3:281:9960:3:93:0,-77.0508,-887.686	0/0:98:98,0:98:3490:0:0:0,-29.5009,-314.309	0/1:395:191,204:191:6754:204:7297:-537.869,0,-489.024	0/1:408:220,188:220:7847:188:6729:-482.863,0,-583.436	0/1:62:38,24:38:1356:24:864:-59.4187,0,-103.632	0/1:385:191,194:191:6841:194:6953:-509.936,0,-499.861	0/1:175:105,70:105:3745:70:2512:-173.651,0,-284.569	0/0:146:146,0:146:5169:0:0:0,-43.9504,-465.348	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1852	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:287:287,0:287:10256:0:0:0,-86.3956,-922.961	0/0:241:241,0:241:8590:0:0:0,-72.5482,-773.093	0/0:94:94,0:94:3323:0:0:0,-28.2968,-299.276	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:250:104,146:104:3687:146:5221:-394.767,0,-256.773	0/1:38:16,22:16:576:22:788:-59.8057,0,-40.7358	0/1:172:82,90:82:2932:90:3221:-238.333,0,-212.338	0/1:133:65,68:65:2332:68:2440:-179.818,0,-170.103	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.503	0/1:159:62,97:62:2179:97:3454:-263.206,0,-148.508	0/1:143:72,71:72:2569:71:2556:-187.242,0,-188.411	0/1:228:103,125:103:3658:125:4447:-331.763,0,-260.788	0/1:84:39,45:39:1385:45:1616:-120.443,0,-99.6603	0/0:259:259,0:259:9278:0:0:0,-77.9668,-834.983	0/0:157:157,0:157:5636:0:0:0,-47.2617,-507.359	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:185:185,0:185:6652:0:0:0,-55.6905,-598.754	0/1:61:30,31:30:1065:31:1116:-82.3889,0,-77.7969	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:210:104,106:104:3683:106:3784:-277.54,0,-268.454	0/1:72:30,42:30:1053:42:1508:-114.34,0,-73.4044	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:133:67,66:67:2378:66:2359:-172.532,0,-174.238	0/0:136:136,0:136:4888:0:0:0,-40.9401,-440.07	.:.:.:.:.:.:.:.	0/1:350:191,159:191:6795:159:5724:-409.912,0,-506.261	0/1:192:90,102:90:3198:102:3660:-271.805,0,-230.243	0/1:163:97,66:97:3454:66:2311:-159.178,0,-262.002	0/0:114:114,0:114:4039:0:0:0,-34.3174,-363.696	0/1:270:139,131:139:4973:131:4712:-342.959,0,-366.439	0/0:146:144,2:144:5138:2:72:0,-37.1137,-455.723	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:119:119,0:119:4245:0:0:0,-35.8226,-382.229	0/0:120:120,0:120:4289:0:0:0,-36.1236,-386.158	0/1:28:13,15:13:449:15:540:-40.5077,0,-32.3086	0/0:116:116,0:116:4114:0:0:0,-34.9195,-370.445	0/0:103:103,0:103:3674:0:0:0,-31.0061,-330.861	0/0:255:255,0:255:9091:0:0:0,-76.7626,-818.165	0/0:200:200,0:200:7141:0:0:0,-60.206,-642.744	0/1:108:50,58:50:1788:58:2073:-154.327,0,-128.691	0/1:188:106,82:106:3781:82:2952:-209.319,0,-283.877	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:163:163,0:163:5821:0:0:0,-49.0679,-524.003	0/0:133:133,0:133:4734:0:0:0,-40.037,-426.218	0/0:278:278,0:278:9854:0:0:0,-83.6863,-886.758	0/0:147:147,0:147:5267:0:0:0,-44.2514,-474.165	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.12	0/1:160:75,85:75:2688:85:3056:-227.104,0,-194	0/0:212:212,0:212:7574:0:0:0,-63.8184,-680.997	0/1:54:25,29:25:896:29:1040:-77.6587,0,-64.7047	0/1:104:53,51:53:1877:51:1828:-133.494,0,-137.9	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.391	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:106:63,43:63:2264:43:1544:-107.344,0,-172.113	0/1:119:42,77:42:1489:77:2768:-213.538,0,-98.48	0/0:138:138,0:138:4888:0:0:0,-41.5421,-440.07	0/0:174:173,1:173:6189:1:36:0,-48.7809,-553.507
chr04	23617143	.	C	T	201565	PASS	AB=0.496632;ABP=3.63932;AC=139;AF=0.747312;AN=186;AO=9542;CIGAR=1X;DP=12765;DPB=12765;DPRA=70.1154;EPP=20714.5;EPPR=6995.15;GTI=0;LEN=1;MEANALT=1.01099;MQM=59.9734;MQMR=59.9994;NS=93;NUMALT=1;ODDS=0.93443;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341834;QR=115235;RO=3220;RPL=9542;RPP=20723.2;RPPR=6995.15;RPR=0;RUN=1;SAF=1;SAP=20714.5;SAR=9541;SRF=0;SRP=6995.15;SRR=3220;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:32,14:32:1152:14:504:-31.8507,0,-90.1428	1/1:279:0,279:0:0:279:9964:-896.698,-83.9874,0	1/1:138:0,138:0:0:138:4929:-443.748,-41.5421,0	1/1:302:0,302:0:0:302:10828:-974.42,-90.9111,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:55:0,55:0:0:55:1950:-175.773,-16.5567,0	0/1:162:82,80:82:2936:80:2872:-209.95,0,-215.707	0/1:267:170,97:170:6092:97:3465:-231.687,0,-468.006	0/1:140:74,66:74:2632:66:2368:-171.234,0,-194.984	1/1:218:0,218:0:0:218:7807:-702.648,-65.6245,0	1/1:90:0,90:0:0:90:3236:-291.432,-27.0927,0	1/1:100:0,100:0:0:100:3596:-323.845,-30.103,0	1/1:94:0,94:0:0:94:3368:-303.333,-28.2968,0	1/1:117:0,117:0:0:117:4196:-377.821,-35.2205,0	1/1:117:0,117:0:0:117:4185:-376.83,-35.2205,0	0/1:60:38,22:38:1360:22:788:-53.183,0,-104.639	1/1:98:0,98:0:0:98:3510:-316.109,-29.5009,0	0/1:106:53,53:53:1904:53:1904:-139.729,0,-139.729	0/1:48:19,29:19:671:29:1044:-79.8254,0,-46.2664	0/1:207:88,119:88:3144:119:4260:-321.265,0,-220.873	0/1:211:105,106:105:3768:106:3793:-278.023,0,-275.801	0/1:67:46,21:46:1636:21:748:-47.4763,0,-127.36	0/1:131:56,75:56:2008:75:2677:-201.739,0,-141.558	1/1:281:3,278:3:108:278:9976:-887.699,-74.5143,0	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	0/1:396:201,195:201:7201:195:6985:-509.504,0,-528.934	0/1:408:185,223:185:6640:223:7970:-594.504,0,-474.856	0/1:61:23,38:23:828:38:1368:-105.013,0,-56.4813	0/1:385:194,191:194:6945:191:6851:-500.759,0,-509.217	0/1:173:69,104:69:2476:104:3732:-284.002,0,-171.015	1/1:146:0,146:0:0:146:5236:-471.376,-43.9504,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:12:0,12:0:0:12:421:-38.2205,-3.61236,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:292:0,292:0:0:292:10466:-941.853,-87.9008,0	1/1:243:0,243:0:0:243:8713:-784.144,-73.1503,0	1/1:95:0,95:0:0:95:3402:-306.389,-28.5979,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:248:144,104:144:5160:104:3721:-260.434,0,-389.885	0/1:38:22,16:22:792:16:576:-40.7358,0,-60.1665	0/1:171:87,84:87:3093:84:3004:-219.116,0,-227.121	0/1:131:67,64:67:2408:64:2298:-167.646,0,-177.541	1/1:111:0,111:0:0:111:3978:-358.203,-33.4143,0	0/1:161:99,62:99:3556:62:2219:-151.508,0,-271.781	0/1:142:69,73:69:2476:73:2620:-193.301,0,-180.347	0/1:229:125,104:125:4457:104:3722:-266.244,0,-332.364	0/1:83:43,40:43:1532:40:1436:-104.552,0,-113.188	1/1:262:0,262:0:0:262:9394:-845.418,-78.8699,0	1/1:158:0,158:0:0:158:5675:-510.867,-47.5627,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:185:0,185:0:0:185:6633:-597.046,-55.6906,0	0/1:61:31,30:31:1108:30:1072:-78.4296,0,-81.6682	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:205:100,105:100:3576:105:3741:-275.179,0,-260.337	0/1:69:38,31:38:1364:31:1116:-79.8229,0,-102.29	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:131:65,66:65:2332:66:2368:-173.943,0,-170.705	1/1:136:0,136:0:0:136:4888:-440.07,-40.9401,0	.:.:.:.:.:.:.:.	0/1:351:158,193:158:5652:193:6909:-516.214,0,-403.139	0/1:190:100,90:100:3584:90:3236:-234.265,0,-265.571	0/1:163:65,98:65:2305:98:3520:-267.941,0,-158.641	1/1:110:0,110:0:0:110:3952:-355.87,-33.1133,0	0/1:266:125,141:125:4461:141:5049:-374.479,0,-321.586	1/1:146:2,144:2:72:144:5164:-458.063,-37.1137,0	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	1/1:121:0,121:0:0:121:4301:-387.262,-36.4246,0	1/1:120:0,120:0:0:120:4300:-387.148,-36.1236,0	0/1:27:14,13:14:496:13:464:-33.9697,0,-36.8465	1/1:120:0,120:0:0:120:4289:-386.172,-36.1236,0	1/1:104:0,104:0:0:104:3735:-336.349,-31.3071,0	1/1:258:0,258:0:0:258:9220:-829.77,-77.6657,0	1/1:200:0,200:0:0:200:7180:-646.248,-60.206,0	0/1:107:57,50:57:2044:50:1796:-129.712,0,-152.022	0/1:185:80,105:80:2868:105:3768:-283.61,0,-202.666	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:164:0,164:0:0:164:5853:-526.882,-49.3689,0	1/1:133:0,133:0:0:133:4755:-428.107,-40.037,0	1/1:277:0,277:0:0:277:9897:-890.628,-83.3853,0	1/1:148:0,148:0:0:148:5304:-477.494,-44.5524,0	1/1:105:0,105:0:0:105:3768:-339.316,-31.6082,0	0/1:159:80,76:80:2872:76:2728:-198.442,0,-211.396	1/1:213:0,213:0:0:213:7640:-686.614,-64.1194,0	0/1:54:29,25:29:1044:25:896:-64.7047,0,-78.0192	0/1:102:48,54:48:1674:54:1940:-144.171,0,-120.237	1/1:92:1,91:1:36:91:3260:-290.022,-24.0965,0	1/1:39:0,39:0:0:39:1404:-126.655,-11.7402,0	0/1:105:42,63:42:1504:63:2268:-172.774,0,-104.046	0/1:119:77,42:77:2768:42:1512:-100.552,0,-213.538	1/1:138:0,138:0:0:138:4921:-443.041,-41.5421,0	1/1:173:0,173:0:0:173:6208:-558.814,-52.0782,0
chr04	23618444	.	ACTTC	AGTTC,TGTTT	257281	PASS	AB=0.523144,0.471974;ABP=30.6517,43.5409;AC=143,45;AF=0.760638,0.239362;AN=188;AO=9166,2829;CIGAR=1M1X3M,2X2M1X;DP=12067;DPB=12069.2;DPRA=32.4274,1.21894;EPP=19837.3,6128.75;EPPR=7.35324;GTI=1;LEN=1,5;MEANALT=2.1828,2.57143;MQM=59.9836,54.3302;MQMR=60;NS=94;NUMALT=2;ODDS=4.06528;PAIRED=0,0;PAIREDR=0;PAO=0,11;PQA=0,108;PQR=0;PRO=0;QA=327884,98957;QR=66;RO=2;RPL=9159,2827;RPP=19846,6128.75;RPPR=7.35324;RPR=7,2;RUN=1,1;SAF=9165,2829;SAP=19898,6146.11;SAR=1,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:58:0,22,36:0:0:22,36:792,1250:-166.279,-101.651,-95.0284,-64.983,0,-54.1459	1/1:300:0,297,0:0:0:297,0:10613,0:-954.764,-89.4059,0,-954.764,-89.4059,-954.764	1/1:193:0,192,0:0:0:192,0:6859,0:-617.162,-57.7978,0,-617.162,-57.7978,-617.162	1/1:345:0,344,0:0:0:344,0:12335,0:-1109.83,-103.554,0,-1109.83,-103.554,-1109.83	1/1:135:0,134,1:0:0:134,1:4775,30:-429.752,-40.338,0,-427.355,-37.7907,-427.054	1/1:111:0,111,0:0:0:111,0:3983,0:-358.659,-33.4143,0,-358.659,-33.4143,-358.659	1/2:181:0,97,84:0:0:97,84:3476,2954:-523.774,-240.277,-211.077,-283.851,0,-258.565	1/2:166:0,96,70:0:0:96,70:3443,2498:-484.103,-203.277,-174.378,-281.183,0,-260.111	1/2:134:0,71,62:0:0:71,62:2538,2166:-382.709,-175.761,-154.388,-207.185,0,-188.521	1/1:138:0,137,0:0:0:137,0:4920,0:-442.649,-41.2411,0,-442.649,-41.2411,-442.649	1/1:51:0,51,0:0:0:51,0:1828,0:-164.801,-15.3525,0,-164.801,-15.3525,-164.801	1/1:67:0,67,0:0:0:67,0:2408,0:-216.976,-20.169,0,-216.976,-20.169,-216.976	1/1:53:0,52,0:0:0:52,0:1860,0:-167.319,-15.6536,0,-167.319,-15.6536,-167.319	1/1:56:0,56,0:0:0:56,0:1995,0:-179.823,-16.8577,0,-179.823,-16.8577,-179.823	1/1:80:0,80,0:0:0:80,0:2863,0:-257.907,-24.0824,0,-257.907,-24.0824,-257.907	1/2:48:0,20,28:0:0:20,28:720,989:-139.363,-80.6117,-74.5911,-59.1082,0,-50.6793	1/1:38:0,37,0:0:0:37,0:1332,0:-119.823,-11.1381,0,-119.823,-11.1381,-119.823	1/2:59:0,27,32:0:0:27,32:972,1121:-169.899,-90.5834,-82.4555,-79.3103,0,-69.6773	1/2:28:0,15,12:0:0:15,12:536,422:-77.8044,-34.0958,-29.5803,-43.7538,0,-40.1415	1/2:290:0,165,124:0:0:165,124:5920,4351:-836.58,-353.695,-304.025,-483.085,0,-445.757	1/2:221:0,119,101:0:0:119,101:4268,3523:-631.756,-283.632,-247.81,-348.17,0,-317.766	1/2:145:0,48,97:0:0:48,97:1716,3419:-418.345,-278.424,-263.975,-140.276,0,-111.076	1/2:155:0,90,65:0:0:90,65:3225,2252:-445.142,-182.132,-155.039,-263.36,0,-243.793	1/1:166:0,152,14:0:0:152,14:5452,499:-490.261,-45.7566,0,-449.646,-4.78519,-445.432	1/1:127:0,127,0:0:0:127,0:4572,0:-411.641,-38.2308,0,-411.641,-38.2308,-411.641	1/2:335:0,165,168:0:0:165,168:5924,5799:-953.938,-470.711,-421.041,-483.299,0,-432.726	1/2:291:0,181,110:0:0:181,110:6444,3882:-840.832,-315.624,-261.138,-525.561,0,-492.448	1/2:41:0,23,18:0:0:23,18:828,641:-120.018,-52.4547,-45.531,-67.9204,0,-62.5019	1/2:374:0,228,145:0:0:228,145:8143,5070:-1075.84,-411.946,-343.311,-663.888,0,-620.238	1/2:189:0,101,87:0:0:101,87:3609,3041:-540.526,-246.267,-215.863,-294.251,0,-268.061	1/1:186:0,184,0:0:0:184,0:6612,0:-594.851,-55.3895,0,-594.851,-55.3895,-594.851	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:12:0,5,7:0:0:5,7:180,223:-32.9519,-18.2474,-16.7422,-15.0469,0,-12.9397	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:238:0,235,0:0:0:235,0:8370,0:-753.061,-70.7421,0,-753.061,-70.7421,-753.061	1/1:246:0,242,0:0:0:242,0:8687,0:-781.464,-72.8493,0,-781.464,-72.8493,-781.464	1/1:73:0,73,0:0:0:73,0:2620,0:-236.047,-21.9752,0,-236.047,-21.9752,-236.047	2/2:4:0,0,4:0:0:0,4:0,139:-12.8354,-12.8354,-12.8354,-1.20412,-1.20412,0	1/2:212:0,115,97:0:0:115,97:4119,3400:-611.719,-275.798,-241.18,-336.274,0,-307.074	1/2:28:0,19,9:0:0:19,9:680,320:-81.7926,-26.3383,-20.6188,-55.8096,0,-53.1003	1/2:199:0,106,92:0:0:106,92:3785,3233:-571.021,-262.435,-230.526,-308.727,0,-281.032	1/2:108:0,54,53:0:0:54,53:1923,1847:-306.474,-149.735,-133.48,-156.731,0,-140.776	1/1:65:0,65,0:0:0:65,0:2303,0:-207.526,-19.567,0,-207.526,-19.567,-207.526	1/2:150:0,65,85:0:0:65,85:2304,2941:-426.82,-239.119,-219.552,-188.052,0,-162.465	1/2:160:0,80,79:0:0:80,79:2863,2810:-461.558,-228.089,-204.007,-233.495,0,-209.713	1/2:257:0,125,130:0:0:125,130:4483,4534:-733.863,-368.208,-330.579,-365.649,0,-326.515	1/2:154:0,59,93:0:0:59,93:2100,3246:-433.923,-262.767,-245.007,-171.226,0,-143.23	1/1:168:0,166,0:0:0:166,0:5972,0:-537.269,-49.971,0,-537.269,-49.971,-537.269	1/1:193:0,192,1:0:0:192,1:6860,36:-617.108,-57.7978,0,-614.172,-54.5015,-613.871	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:253:0,253,0:0:0:253,0:9061,0:-815.464,-76.1606,0,-815.464,-76.1606,-815.464	1/2:86:0,42,43:0:0:42,43:1503,1517:-246.085,-123.518,-110.875,-122.708,0,-109.764	1/1:16:0,16,0:0:0:16,0:568,0:-51.4519,-4.81648,0,-51.4519,-4.81648,-51.4519	1/2:206:0,104,98:0:0:104,98:3728,3423:-581.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chr04	23792894	.	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chr04	23841989	.	C	G	195755	PASS	AB=0.475925;ABP=36.3644;AC=141;AF=0.75;AN=188;AO=9443;CIGAR=1X;DP=12934;DPB=12934;DPRA=69.5269;EPP=20508.2;EPPR=7555.39;GTI=2;LEN=1;MEANALT=1.12903;MQM=59.9925;MQMR=59.9963;NS=94;NUMALT=1;ODDS=1.09315;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=335127;QR=122548;RO=3478;RPL=9440;RPP=20482.2;RPPR=7546.71;RPR=3;RUN=1;SAF=9440;SAP=20482.2;SAR=3;SRF=3477;SRP=7546.71;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:9,11:9:324:11:392:-29.5995,0,-23.4853	1/1:196:0,196:0:0:196:6968:-627.189,-59.0019,0	1/1:213:0,213:0:0:213:7539:-678.557,-64.1194,0	1/1:290:0,290:0:0:290:10295:-926.485,-87.2987,0	1/1:63:2,61:2:68:61:2176:-189.649,-12.5072,0	1/1:58:0,58:0:0:58:2058:-185.49,-17.4597,0	0/1:186:95,91:95:3315:91:3202:-232.412,0,-242.578	0/1:235:124,111:124:4392:111:3956:-285.489,0,-324.714	0/1:110:61,49:61:2123:49:1726:-122.51,0,-158.221	1/1:149:0,149:0:0:149:5271:-474.522,-44.8535,0	1/1:110:0,110:0:0:110:3928:-353.708,-33.1133,0	1/1:89:0,89:0:0:89:3158:-284.446,-26.7917,0	1/1:111:0,111:0:0:111:3954:-356.052,-33.4143,0	1/1:122:0,122:0:0:122:4342:-390.957,-36.7257,0	1/1:84:0,84:0:0:84:2953:-266.005,-25.2865,0	0/1:64:32,32:32:1109:32:1135:-83.1921,0,-80.8486	1/1:136:0,136:0:0:136:4822:-434.14,-40.9401,0	0/1:100:44,56:44:1568:56:1968:-147.293,0,-111.309	0/1:59:31,28:31:1087:28:1000:-72.5546,0,-80.3776	0/1:190:102,88:102:3610:88:3129:-224.64,0,-267.91	0/1:160:87,72:87:3052:72:2562:-182.606,0,-226.684	0/1:259:185,74:185:6512:74:2635:-159.43,0,-508.204	0/1:142:52,90:52:1820:90:3204:-245.838,0,-121.332	1/1:107:3,103:3:108:103:3662:-319.746,-22.0815,0	1/1:66:0,66:0:0:66:2326:-209.6,-19.868,0	0/1:520:272,248:272:9599:248:8798:-635.279,0,-707.341	0/1:280:146,134:146:5176:134:4761:-344.361,0,-381.695	0/1:49:23,24:23:824:24:864:-63.5743,0,-59.9752	0/1:345:194,151:194:6814:151:5366:-379.219,0,-509.482	0/1:221:105,116:105:3755:116:4110:-303.558,0,-271.622	1/1:221:0,221:0:0:221:7893:-710.396,-66.5276,0	0/1:10:7,3:7:243:3:108:-7.06487,0,-19.1972	0/1:18:11,7:11:387:7:248:-17.2457,0,-29.7474	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	1/1:278:1,276:1:36:276:9830:-881.052,-80.1469,0	1/1:263:0,262:0:0:262:9257:-832.743,-78.8699,0	1/1:86:0,86:0:0:86:3070:-276.528,-25.8886,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:174:95,79:95:3351:79:2798:-199.681,0,-249.428	0/1:42:22,20:22:788:20:712:-51.7634,0,-58.6015	0/1:150:66,84:66:2335:84:2985:-223.727,0,-165.238	0/1:109:53,56:53:1881:56:1991:-146.651,0,-136.754	1/1:88:0,88:0:0:88:3148:-283.546,-26.4906,0	0/1:118:77,41:77:2742:41:1464:-96.5345,0,-211.5	0/1:158:82,76:82:2889:76:2716:-197.121,0,-212.685	0/1:328:199,129:199:6988:129:4582:-313.809,0,-530.254	0/1:216:97,118:97:3411:118:4200:-313.1,0,-242.125	1/1:202:0,202:0:0:202:7202:-648.238,-60.8081,0	1/1:155:0,155:0:0:155:5500:-495.13,-46.6597,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:180:0,180:0:0:180:6383:-574.564,-54.1854,0	0/1:78:41,37:41:1440:37:1279:-91.9266,0,-106.413	1/1:38:0,37:0:0:37:1296:-116.579,-11.1381,0	0/1:180:88,92:88:3103:92:3291:-242.223,0,-225.309	0/1:60:30,30:30:1043:30:1072:-78.7307,0,-76.1143	0/1:25:15,10:15:536:10:351:-24.4009,0,-41.0491	0/1:24:11,13:11:392:13:464:-34.8728,0,-28.3953	0/1:119:48,71:48:1698:71:2507:-190.059,0,-117.282	1/1:151:1,150:1:36:150:5331:-476.327,-41.8573,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:276:162,114:162:5669:114:4043:-280.974,0,-427.251	0/1:302:131,171:131:4586:171:6077:-456.122,0,-321.999	0/1:80:35,45:35:1233:45:1592:-119.487,0,-87.1897	1/1:93:0,93:0:0:93:3294:-296.681,-27.9958,0	0/1:313:158,155:158:5544:155:5495:-400.458,0,-404.868	1/1:141:2,139:2:72:139:4933:-437.286,-35.6085,0	1/1:50:0,50:0:0:50:1765:-159.128,-15.0515,0	1/1:83:0,82:0:0:82:2919:-262.586,-24.6845,0	1/1:135:0,135:0:0:135:4761:-428.651,-40.6391,0	0/1:47:24,23:24:842:23:797:-57.8975,0,-61.9487	1/1:166:0,165:0:0:165:5860:-527.155,-49.67,0	1/1:88:0,87:0:0:87:3074:-276.53,-26.1896,0	1/1:398:0,398:0:0:398:14024:-1261.55,-119.81,0	1/1:227:0,227:0:0:227:8124:-731.176,-68.3338,0	0/1:148:85,62:85:3016:62:2207:-154.283,0,-227.059	0/1:160:91,69:91:3227:69:2443:-171.961,0,-242.489	0/1:17:4,13:4:135:13:460:-36.6179,0,-7.365	1/1:171:1,170:1:32:170:6044:-540.863,-48.2768,0	1/1:167:0,167:0:0:167:5897:-530.845,-50.272,0	1/1:253:0,253:0:0:253:8979:-808.098,-76.1606,0	1/1:142:0,142:0:0:142:5039:-453.658,-42.7463,0	1/1:83:0,83:0:0:83:2927:-263.667,-24.9855,0	0/1:125:52,73:52:1822:73:2563:-193.291,0,-126.631	1/1:195:0,195:0:0:195:6899:-620.985,-58.7009,0	0/1:48:18,29:18:625:29:1025:-78.0537,0,-42.0649	0/1:118:56,62:56:1982:62:2208:-163.464,0,-143.132	1/1:121:0,121:0:0:121:4271:-384.571,-36.4246,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	0/1:156:95,61:95:3363:61:2164:-148.067,0,-255.925	0/1:86:51,35:51:1773:35:1260:-87.8169,0,-133.962	1/1:99:0,99:0:0:99:3514:-316.471,-29.802,0	1/1:127:0,127:0:0:127:4527:-407.599,-38.2308,0
chr04	23986247	.	T	G	58953.6	PASS	AB=0.648741;ABP=1017.83;AC=45;AF=0.247253;AN=182;AO=3440;CIGAR=1X;DP=8521;DPB=8521;DPRA=1.74622;EPP=7472.88;EPPR=11014.5;GTI=10;LEN=1;MEANALT=1.07843;MQM=44.5279;MQMR=59.6818;NS=91;NUMALT=1;ODDS=1.1453;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122892;QR=182158;RO=5075;RPL=0;RPP=7472.88;RPPR=11014.5;RPR=3440;RUN=1;SAF=3440;SAP=7472.88;SAR=0;SRF=5075;SRP=11023.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:9,32:9:324:32:1143:-87.3954,0,-17.1636	0/0:177:177,0:177:6345:0:0:0,-53.2823,-571.069	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.571	0/0:141:141,0:141:5060:0:0:0,-42.4452,-455.502	0/0:21:20,1:20:716:1:36:0,-2.86714,-61.3132	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.186	0/1:110:53,57:53:1896:57:2033:-147.114,0,-137.804	0/1:194:63,131:63:2249:131:4708:-355.187,0,-143.927	0/1:95:32,63:32:1148:63:2252:-168.825,0,-74.8733	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.724	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9332	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.493	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.838	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.325	0/0:40:40,0:40:1432:0:0:0,-12.0412,-128.321	0/1:45:23,22:23:820:22:792:-53.5775,0,-60.5624	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204	0/1:58:31,27:31:1101:27:957:-67.189,0,-81.9249	0/1:27:13,14:13:468:14:504:-35.902,0,-34.3318	0/1:227:78,149:78:2808:149:5344:-406.105,0,-184.625	0/1:139:68,71:68:2448:71:2539:-177.407,0,-178.4	0/1:135:19,116:19:669:116:4126:-327.871,0,-19.8911	0/1:93:19,74:19:684:74:2633:-206.527,0,-33.8945	0/0:127:118,9:118:4229:9:324:0,-9.90399,-352.349	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.4995	0/1:444:164,279:164:5904:279:9974:-753.739,0,-397.656	0/1:198:71,127:71:2552:127:4522:-331.416,0,-170.285	0/1:31:14,17:14:504:17:608:-43.7468,0,-36.3524	0/1:290:95,195:95:3404:195:6966:-534.776,0,-219.256	0/1:183:58,124:58:2073:124:4433:-329.096,0,-131.679	0/0:87:86,1:86:3088:1:36:0,-22.6411,-274.584	0/1:7:1,6:1:36:6:216:-16.8925,0,-1.49106	0/1:16:3,13:3:108:13:468:-36.0319,0,-5.25869	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:141:140,0:140:5040:0:0:0,-42.1442,-453.329	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.528	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.393	.:.:.:.:.:.:.:.	0/1:285:110,174:110:3956:174:6206:-447.067,0,-270.324	0/1:27:12,15:12:428:15:528:-35.9971,0,-30.7238	0/1:130:40,90:40:1440:90:3236:-239.437,0,-90.7638	0/1:54:21,33:21:752:33:1188:-88.881,0,-51.7369	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.914	0/1:96:29,67:29:1044:67:2392:-184.843,0,-65.3622	0/1:139:48,91:48:1724:91:3245:-244.493,0,-113.602	0/1:246:90,156:90:3217:156:5578:-421.792,0,-215.592	0/1:163:65,98:65:2336:98:3508:-263.303,0,-161.431	0/0:131:130,1:130:4672:1:36:0,-35.8615,-417.011	0/0:118:118,0:118:4229:0:0:0,-35.5215,-380.719	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:133:133,0:133:4784:0:0:0,-40.037,-430.7	0/1:55:20,35:20:716:35:1256:-95.5083,0,-48.2077	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:122:51,71:51:1836:71:2533:-182.067,0,-128.75	0/1:59:24,35:24:864:35:1241:-92.3104,0,-60.308	0/1:10:3,7:3:108:7:252:-19.8597,0,-7.06487	0/1:19:2,17:2:72:17:608:-48.8575,0,-1.11715	0/1:90:28,62:28:1008:62:2224:-164.71,0,-63.9437	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.553	.:.:.:.:.:.:.:.	0/1:280:96,184:96:3441:184:6615:-504.057,0,-225.612	0/1:239:68,171:68:2425:171:6078:-467.777,0,-146.558	0/1:122:48,74:48:1716:74:2652:-189.103,0,-117.972	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.034	0/1:196:70,126:70:2516:126:4445:-335.082,0,-167.484	0/0:63:62,1:62:2232:1:36:0,-15.3915,-197.556	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.269	0/0:67:67,0:67:2403:0:0:0,-20.169,-216.431	0/1:32:10,22:10:360:22:784:-60.6948,0,-23.0975	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.706	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.116	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.67	0/0:170:169,1:169:6064:1:36:0,-47.6017,-542.098	0/1:125:20,105:20:716:105:3772:-293.68,0,-27.139	0/1:165:61,102:61:2196:102:3645:-269.541,0,-148.437	0/1:18:8,10:8:288:10:360:-26.6226,0,-20.8489	0/0:137:137,0:137:4924:0:0:0,-41.2411,-443.115	0/0:78:78,0:78:2800:0:0:0,-23.4803,-251.494	0/0:158:158,0:158:5649:0:0:0,-47.5627,-508.446	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.664	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.076	0/1:81:39,42:39:1404:42:1493:-108.895,0,-102.221	0/0:112:112,0:112:4028:0:0:0,-33.7154,-362.693	0/1:31:19,12:19:680:12:417:-27.8024,0,-52.1972	0/1:56:24,32:24:864:32:1133:-82.3368,0,-61.2111	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.775	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:40:10,30:10:360:30:1076:-80.3385,0,-20.7031	0/1:68:20,48:20:716:48:1705:-131.211,0,-44.2977	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.267	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.188
chr04	23986275	.	CCGTTT	CTGTTT,TTGTTT	171781	PASS	AB=0.348797,0.646239;ABP=1043.17,975.996;AC=136,46;AF=0.747253,0.252747;AN=182;AO=5006,3417;CIGAR=1M1X4M,2X4M;DP=8465;DPB=8465.67;DPRA=0,1.75653;EPP=10873.4,7422.93;EPPR=0;GTI=10;LEN=1,2;MEANALT=1.93407,2.43137;MQM=59.7227,44.5446;MQMR=0;NS=91;NUMALT=2;ODDS=12905.6;PAIRED=0,0;PAIREDR=0;PAO=0,4;PQA=0,136;PQR=0;PRO=0;QA=178816,118424;QR=0;RO=0;RPL=5006,3417;RPP=10873.4,7422.93;RPPR=0;RPR=0,0;RUN=1,1;SAF=5006,3417;SAP=10873.4,7422.93;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,9,32:0:0:9,32:324,1040:-108.863,-82.4168,-79.7076,-26.7966,0,-17.1636	1/1:178:0,177,0:0:0:177,0:6333,0:-569.656,-53.2823,0,-569.656,-53.2823,-569.656	1/1:96:0,93,0:0:0:93,0:3334,0:-299.633,-27.9958,0,-299.633,-27.9958,-299.633	1/1:141:0,140,0:0:0:140,0:5016,0:-451.34,-42.1442,0,-451.34,-42.1442,-451.34	1/1:21:0,20,1:0:0:20,1:720,34:-64.7971,-6.0206,0,-62.1271,-3.01892,-61.8261	1/1:32:0,29,0:0:0:29,0:1044,0:-93.9272,-8.72987,0,-93.9272,-8.72987,-93.9272	1/2:110:0,53,57:0:0:53,57:1891,1982:-313.247,-159.085,-143.131,-154.512,0,-137.353	1/2:192:0,61,131:0:0:61,131:2171,4523:-536.433,-359.588,-341.225,-177.194,0,-137.759	1/2:93:0,31,62:0:0:31,62:1100,2105:-256.844,-167.244,-157.912,-89.9472,0,-71.2834	1/1:70:0,70,0:0:0:70,0:2483,0:-223.721,-21.0721,0,-223.721,-21.0721,-223.721	1/1:14:0,14,0:0:0:14,0:504,0:-45.6947,-4.21442,0,-45.6947,-4.21442,-45.6947	1/1:51:0,51,0:0:0:51,0:1832,0:-165.133,-15.3525,0,-165.133,-15.3525,-165.133	1/1:44:0,44,0:0:0:44,0:1576,0:-142.118,-13.2453,0,-142.118,-13.2453,-142.118	1/1:40:0,40,0:0:0:40,0:1434,0:-129.316,-12.0412,0,-129.316,-12.0412,-129.316	1/1:40:0,39,0:0:0:39,0:1400,0:-126.056,-11.7402,0,-126.056,-11.7402,-126.056	1/2:43:0,21,22:0:0:21,22:748,757:-119.946,-58.9652,-52.6436,-61.3237,0,-54.701	1/1:63:0,62,0:0:0:62,0:2232,0:-200.786,-18.6639,0,-200.786,-18.6639,-200.786	1/2:59:0,31,27:0:0:31,27:1103,959:-166.309,-76.4133,-67.0814,-89.8897,0,-81.7618	1/2:27:0,13,14:0:0:13,14:468,494:-77.6382,-39.444,-35.5307,-38.5463,0,-34.3318	1/2:228:0,79,148:0:0:79,148:2840,5197:-649.827,-418.126,-394.345,-231.773,0,-187.22	1/2:143:0,68,74:0:0:68,74:2440,2513:-394.722,-195.694,-175.224,-199.124,0,-176.847	1/2:135:0,19,116:0:0:19,116:680,4015:-379.424,-324.016,-318.297,-55.7636,0,-20.8441	1/2:94:0,19,75:0:0:19,75:680,2621:-266.482,-211.027,-205.308,-55.8096,0,-33.2323	1/1:127:0,118,9:0:0:118,9:4212,317:-378.795,-35.5215,0,-354.026,-10.734,-351.317	1/1:29:0,29,0:0:0:29,0:1032,0:-93.1879,-8.72987,0,-93.1879,-8.72987,-93.1879	1/2:439:0,159,279:0:0:159,279:5662,9635:-1237.43,-776.019,-728.155,-461.428,0,-377.441	1/2:195:0,71,124:0:0:71,124:2544,4341:-546.804,-339.358,-317.985,-207.437,0,-170.109	1/2:31:0,14,17:0:0:14,17:500,600:-88.1131,-47.3465,-43.1321,-41.1162,0,-35.9987	1/2:286:0,92,190:0:0:92,190:3295,6532:-795.449,-526.73,-499.035,-268.789,0,-211.593	1/2:184:0,57,125:0:0:57,125:2033,4327:-503.718,-337.999,-320.84,-165.767,0,-128.138	1/1:89:0,88,1:0:0:88,1:3146,36:-282.993,-26.4906,0,-280.1,-23.2432,-279.799	1/2:7:0,1,6:0:0:1,6:36,216:-20.133,-17.1935,-16.8925,-3.29724,0,-1.49106	1/2:16:0,3,13:0:0:3,13:108,449:-44.3223,-35.5053,-34.6022,-9.17208,0,-5.25869	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	.:.:.:.:.:.:.:.	1/1:3:0,3,0:0:0:3,0:108,0:-9.71534,-0.90309,0,-9.71534,-0.90309,-9.71534	1/1:140:0,140,0:0:0:140,0:4998,0:-449.922,-42.1442,0,-449.922,-42.1442,-449.922	1/1:127:0,127,0:0:0:127,0:4524,0:-407.314,-38.2308,0,-407.314,-38.2308,-407.314	1/1:40:0,40,0:0:0:40,0:1423,0:-128.339,-12.0412,0,-128.339,-12.0412,-128.339	.:.:.:.:.:.:.:.	1/2:278:0,106,172:0:0:106,172:3790,5819:-762.926,-453.94,-422.031,-309.332,0,-257.555	1/2:27:0,11,16:0:0:11,16:387,535:-72.9511,-41.4349,-38.1235,-31.8546,0,-27.0381	1/2:131:0,40,89:0:0:40,89:1415,3096:-357.261,-242.003,-229.962,-115.372,0,-88.58	1/2:54:0,20,34:0:0:20,34:707,1178:-152.255,-94.6838,-88.6632,-57.9202,0,-47.6852	1/1:51:0,51,0:0:0:51,0:1800,0:-162.25,-15.3525,0,-162.25,-15.3525,-162.25	1/2:94:0,28,66:0:0:28,66:1004,2265:-264.658,-182.77,-174.341,-82.2415,0,-62.3735	1/2:138:0,48,90:0:0:48,90:1715,3166:-392.325,-252.492,-238.043,-140.185,0,-113.093	1/2:243:0,87,156:0:0:87,156:3113,5470:-695.19,-441.343,-415.153,-254.202,0,-207.241	1/2:164:0,66,97:0:0:66,97:2372,3356:-463.65,-270.132,-250.264,-193.574,0,-164.374	1/1:132:0,130,1:0:0:130,1:4659,36:-419.135,-39.1339,0,-416.22,-36.1551,-415.919	1/1:119:0,119,0:0:0:119,0:4217,0:-379.663,-35.8226,0,-379.663,-35.8226,-379.663	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:131:0,130,0:0:0:130,0:4672,0:-420.281,-39.1339,0,-420.281,-39.1339,-420.281	1/2:53:0,20,33:0:0:20,33:720,1166:-153.309,-94.5606,-88.54,-59.1048,0,-49.1708	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:120:0,49,71:0:0:49,71:1760,2491:-338.48,-194.942,-180.192,-143.889,0,-122.515	1/2:61:0,24,34:0:0:24,34:845,1203:-165.787,-96.9924,-89.7677,-68.887,0,-58.6519	1/2:10:0,3,7:0:0:3,7:108,250:-29.4025,-20.5887,-19.6856,-9.17208,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chr04	24004294	.	T	A	18789.3	PASS	AB=0.472497;ABP=14.9546;AC=40;AF=0.212766;AN=188;AO=888;CIGAR=1X;DP=6008;DPB=6008;DPRA=0.609902;EPP=1931.28;EPPR=11060.2;GTI=1;LEN=1;MEANALT=1.04444;MQM=59.9358;MQMR=59.9965;NS=94;NUMALT=1;ODDS=15.6504;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31405;QR=181228;RO=5116;RPL=405;RPP=17.8878;RPPR=2961.24;RPR=483;RUN=1;SAF=405;SAP=17.8878;SAR=483;SRF=1236;SRP=2970.21;SRR=3880;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:12,9:12:428:9:309:-21.8191,0,-32.5372	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:48:48,0:48:1697:0:0:0,-14.4494,-153.014	0/0:62:62,0:62:2191:0:0:0,-18.6639,-197.456	0/0:27:27,0:27:938:0:0:0,-8.12781,-84.7293	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6551	0/1:23:11,12:11:392:12:428:-31.9351,0,-28.6964	0/1:35:16,19:16:549:19:680:-50.9931,0,-39.1964	0/1:45:28,17:28:977:17:596:-40.2283,0,-74.6942	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:257:257,0:257:9103:0:0:0,-77.3647,-819.254	0/0:103:103,0:103:3613:0:0:0,-31.0061,-325.381	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.874	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.057	0/0:71:71,0:71:2495:0:0:0,-21.3731,-224.802	0/1:81:35,46:35:1240:46:1631:-122.695,0,-87.521	0/0:36:36,0:36:1228:0:0:0,-10.8371,-110.818	0/1:50:24,26:24:860:26:932:-69.1474,0,-62.6703	0/1:82:62,20:62:2228:20:703:-38.9091,0,-176.099	0/1:45:24,21:24:852:21:737:-53.1043,0,-63.454	0/1:68:35,33:35:1213:33:1176:-85.6777,0,-88.9983	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:45:21,24:21:744:24:852:-63.454,0,-53.738	0/0:24:22,2:22:788:2:72:0,-0.387997,-64.4081	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:76:33,43:33:1168:43:1528:-114.935,0,-82.5489	0/1:60:35,25:35:1248:25:875:-61.0034,0,-94.5631	0/1:30:12,18:12:428:18:644:-49.2597,0,-29.8279	0/1:54:29,25:29:1040:25:888:-63.9828,0,-77.6587	0/1:23:14,9:14:500:9:320:-22.2187,0,-38.4106	0/0:30:30,0:30:1048:0:0:0,-9.0309,-94.6273	0/0:67:67,0:67:2375:0:0:0,-20.169,-214.008	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:121:121,0:121:4309:0:0:0,-36.4246,-387.987	0/0:224:223,0:223:7972:0:0:0,-67.1297,-717.144	0/0:154:154,0:154:5477:0:0:0,-46.3586,-493.06	0/0:129:129,0:129:4565:0:0:0,-38.8329,-411.02	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:171:171,0:171:6071:0:0:0,-51.4761,-546.496	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:61:32,29:32:1119:29:990:-71.043,0,-82.654	0/1:74:59,15:59:2091:15:540:-26.6603,0,-166.183	0/1:47:26,21:26:924:21:747:-53.4059,0,-69.3292	0/1:64:29,35:29:1028:35:1223:-91.1069,0,-73.5671	0/0:40:40,0:40:1385:0:0:0,-12.0412,-124.945	0/1:36:14,22:14:496:22:788:-60.4077,0,-34.1372	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/1:40:19,20:19:665:20:712:-52.3068,0,-48.0733	0/1:22:11,11:11:388:11:380:-27.9093,0,-28.6347	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0745	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:117:117,0:117:4117:0:0:0,-35.2205,-370.718	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:23:12,11:12:428:11:379:-27.5169,0,-31.9351	0/0:48:48,0:48:1693:0:0:0,-14.4494,-152.654	0/1:41:19,22:19:672:22:784:-58.5417,0,-48.4646	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/0:39:38,1:38:1336:1:36:0,-8.14189,-116.942	0/0:11:10,1:10:352:1:32:0,-0.112017,-28.8189	0/1:29:12,17:12:420:17:585:-44.242,0,-29.4042	0/0:60:59,0:59:2078:0:0:0,-17.7608,-186.93	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.203	1/1:16:1,15:1:36:15:526:-44.0714,-1.21821,0	0/1:42:18,24:18:627:24:852:-64.3571,0,-44.1111	0/1:16:9,7:9:320:7:248:-17.8477,0,-24.3259	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:51:29,22:29:1016:22:788:-55.8923,0,-76.3964	0/0:45:45,0:45:1572:0:0:0,-13.5463,-141.768	0/0:418:418,0:418:14809:0:0:0,-125.831,-1332.56	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/0:78:72,6:72:2533:6:212:0,-4.05554,-208.797	0/0:19:19,0:19:668:0:0:0,-5.71957,-60.4457	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.651	0/0:47:47,0:47:1663:0:0:0,-14.1484,-149.957	0/1:33:21,12:21:756:12:432:-29.2872,0,-58.4332	0/1:32:14,18:14:500:18:644:-48.6576,0,-35.7032	0/0:127:124,3:124:4375:3:108:0,-28.1556,-383.85	0/0:44:43,1:43:1521:1:36:0,-9.64704,-133.583	0/0:46:46,0:46:1622:0:0:0,-13.8474,-146.265	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.324	0/0:58:58,0:58:2044:0:0:0,-17.4597,-184.23	0/0:52:52,0:52:1839:0:0:0,-15.6536,-165.79	0/1:65:28,37:28:983:37:1328:-100.255,0,-69.2156	0/0:127:127,0:127:4483:0:0:0,-38.2308,-403.643	0/1:22:7,15:7:239:15:536:-41.9522,0,-15.2201	0/1:63:25,38:25:878:38:1308:-99.0375,0,-60.371	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.104	0/0:327:327,0:327:11600:0:0:0,-98.4368,-1043.88	0/1:181:141,39:141:5011:39:1359:-68.0987,0,-396.63	0/1:90:17,73:17:600:73:2601:-207.244,0,-27.2365	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:89:89,0:89:3170:0:0:0,-26.7917,-285.524
chr04	24056320	.	C	T	76087.7	PASS	AB=0.580017;ABP=134.369;AC=142;AF=0.755319;AN=188;AO=3620;CIGAR=1X;DP=4616;DPB=4616;DPRA=0;EPP=7846.38;EPPR=2137.65;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9925;MQMR=59.9749;NS=94;NUMALT=1;ODDS=1.14889;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129225;QR=35518;RO=995;RPL=3618;RPP=7846.38;RPPR=2137.65;RPR=2;RUN=1;SAF=0;SAP=7863.74;SAR=3620;SRF=0;SRP=2163.63;SRR=995;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:7,5:7:252:5:172:-12.2056,0,-19.4166	1/1:116:1,115:1:36:115:4112:-366.667,-31.3212,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:102:0,102:0:0:102:3640:-327.805,-30.7051,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:66:30,36:30:1050:36:1284:-95.9949,0,-74.9383	0/1:77:46,31:46:1656:31:1112:-77.212,0,-125.831	0/1:43:17,26:17:608:26:932:-71.2546,0,-42.1077	1/1:91:0,91:0:0:91:3260:-293.621,-27.3937,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	1/1:31:0,31:0:0:31:1103:-99.5798,-9.33193,0	0/1:28:8,20:8:284:20:716:-56.3389,0,-17.4745	1/1:23:0,23:0:0:23:796:-71.957,-6.92369,0	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/1:54:24,30:24:856:30:1080:-81.2576,0,-61.1055	0/1:80:36,44:36:1287:44:1552:-115.887,0,-92.0504	0/1:37:22,15:22:788:15:536:-37.4367,0,-60.1067	0/1:57:23,34:23:824:34:1193:-90.5145,0,-57.3246	0/1:78:10,68:10:356:68:2440:-196.374,0,-8.90091	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:139:60,78:60:2156:78:2800:-210.338,0,-152.405	0/1:62:24,38:24:856:38:1360:-104.037,0,-58.6972	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:74:37,37:37:1324:37:1316:-96.4656,0,-97.1859	0/1:97:33,64:33:1168:64:2273:-175.631,0,-76.2273	1/1:71:0,71:0:0:71:2550:-229.75,-21.3731,0	0/1:13:6,7:6:212:7:248:-18.7508,0,-15.5114	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:18:1,17:1:36:17:593:-50.0964,-1.82027,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	1/1:110:0,110:0:0:110:3925:-353.442,-33.1133,0	1/1:32:0,32:0:0:32:1136:-102.549,-9.63296,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:75:31,44:31:1116:44:1568:-118.834,0,-78.1744	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:59:24,35:24:860:35:1218:-92.1585,0,-59.9611	0/1:32:13,19:13:468:19:665:-50.5398,0,-32.8267	1/1:28:0,28:0:0:28:988:-89.2339,-8.42884,0	0/1:52:11,41:11:396:41:1476:-117.483,0,-20.3292	0/1:36:16,20:16:572:20:705:-52.9366,0,-40.9763	0/1:95:28,67:28:1004:67:2396:-187.299,0,-62.078	0/1:90:27,63:27:968:63:2252:-175.851,0,-60.3447	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:89:0,89:0:0:89:3181:-286.512,-26.7917,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	0/1:45:24,21:24:855:21:748:-54.0989,0,-63.7238	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:59:32,27:32:1139:27:964:-69.3155,0,-85.0576	0/1:29:17,12:17:599:12:428:-30.1289,0,-45.5082	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:42:29,13:29:1036:13:468:-29.8164,0,-80.9107	0/1:39:19,20:19:676:20:712:-52.6665,0,-49.4278	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:200:93,107:93:3320:107:3840:-285.589,0,-238.813	0/1:91:39,52:39:1396:52:1860:-140.286,0,-98.5454	0/1:47:8,39:8:288:39:1400:-112.151,0,-12.119	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	0/1:91:43,48:43:1539:48:1719:-127.601,0,-111.409	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:38:0,38:0:0:38:1350:-121.798,-11.4391,0	0/1:20:12,8:12:416:8:288:-20.2468,0,-31.751	1/1:52:0,52:0:0:52:1855:-167.229,-15.6536,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:102:0,102:0:0:102:3640:-327.759,-30.7051,0	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	0/1:35:16,19:16:572:19:676:-50.6319,0,-41.2774	0/1:85:28,57:28:982:57:2007:-155.311,0,-63.1041	0/1:19:9,10:9:320:10:345:-25.6613,0,-23.4228	1/1:61:1,60:1:36:60:2144:-189.629,-14.7646,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:96:0,96:0:0:96:3425:-308.462,-28.8989,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:29:11,18:11:392:18:636:-48.8382,0,-26.8902	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:14:8,6:8:284:6:212:-15.2104,0,-21.6889	0/1:38:8,30:8:280:30:1076:-85.7137,0,-14.1002	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:27:13,14:13:459:14:504:-37.5703,0,-33.5163	0/1:28:20,8:20:716:8:284:-17.4745,0,-56.3389	1/1:116:0,116:0:0:116:4110:-370.085,-34.9195,0	1/1:38:1,37:1:36:37:1313:-114.871,-7.84087,0
chr04	24438380	.	CCT	TCG,CCG	362396	PASS	AB=0.512275,0.483815;ABP=11.3801,17.56;AC=143,45;AF=0.760638,0.239362;AN=188;AO=10820,3120;CIGAR=1X1M1X,2M1X;DP=13991;DPB=13993.7;DPRA=0,1.08298;EPP=23446.3,6769.32;EPPR=11.6962;GTI=1;LEN=3,1;MEANALT=2.05319,2.43636;MQM=56.3568,59.7407;MQMR=60;NS=94;NUMALT=2;ODDS=1.86393;PAIRED=0,0;PAIREDR=0;PAO=6,1;PQA=204,0;PQR=0;PRO=1;QA=365450,109390;QR=101;RO=4;RPL=6342,1882;RPP=700.309,291.66;RPPR=5.18177;RPR=4478,1238;RUN=1,1;SAF=6336,1881;SAP=691.36,289.87;SAR=4484,1239;SRF=1;SRP=5.18177;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:125:0,75,50:0:0:75,50:2525,1780:-348.68,-145.407,-122.83,-203.62,0,-188.568	1/1:172:0,171,1:0:0:171,1:5806,36:-521.046,-51.4761,0,-518.109,-48.1789,-517.808	1/1:170:0,167,0:0:0:167,0:5658,0:-508.5,-50.272,0,-508.5,-50.272,-508.5	1/1:248:0,245,3:0:0:245,3:8286,108:-744.91,-73.7524,0,-736.098,-64.5803,-735.195	1/1:92:0,91,0:0:0:91,0:3046,0:-273.598,-27.3937,0,-273.598,-27.3937,-273.598	1/1:117:0,117,0:0:0:117,0:4007,0:-359.835,-35.2205,0,-359.835,-35.2205,-359.835	1/2:143:0,81,62:0:0:81,62:2776,2187:-403.666,-178.43,-154.046,-225.584,0,-206.92	1/2:174:1,100,73:1:28:100,73:3440,2540:-482.553,-204.362,-176.477,-276.339,0,-256.582	1/2:199:0,109,90:0:0:109,90:3687,3158:-554.477,-256.905,-224.093,-297.916,0,-270.823	1/1:140:0,140,0:0:0:140,0:4831,0:-433.867,-42.1442,0,-433.867,-42.1442,-433.867	1/1:120:0,120,0:0:0:120,0:4032,0:-362.921,-36.1236,0,-362.921,-36.1236,-362.921	1/1:235:0,235,0:0:0:235,0:7729,0:-694.368,-70.7421,0,-694.368,-70.7421,-694.368	1/1:194:0,194,0:0:0:194,0:6549,0:-587.629,-58.3998,0,-587.629,-58.3998,-587.629	1/1:176:0,175,0:0:0:175,0:5860,0:-526.416,-52.6803,0,-526.416,-52.6803,-526.416	1/1:206:0,204,0:0:0:204,0:6945,0:-624.42,-61.4101,0,-624.42,-61.4101,-624.42	1/2:140:0,77,62:0:0:77,62:2576,2164:-384.428,-176.148,-152.969,-208.409,0,-189.745	1/1:159:0,159,0:0:0:159,0:5440,0:-488.771,-47.8638,0,-488.771,-47.8638,-488.771	1/2:133:0,49,84:0:0:49,84:1681,2941:-375.906,-239.629,-224.878,-136.623,0,-111.336	1/2:99:0,55,44:0:0:55,44:1847,1497:-270.56,-121.768,-105.211,-149.13,0,-135.885	1/2:255:0,141,113:0:0:141,113:4812,3998:-715.87,-325.696,-283.25,-390.242,0,-356.225	1/2:293:0,141,152:0:0:141,152:4779,5337:-821.763,-434.686,-392.241,-387.422,0,-341.665	1/1:89:0,89,0:0:0:89,0:3007,0:-270.371,-26.7917,0,-270.371,-26.7917,-270.371	1/2:139:0,67,70:0:0:67,70:2293,2421:-382.616,-196.715,-176.546,-185.897,0,-164.825	1/1:132:0,126,6:0:0:126,6:4246,212:-381.62,-37.9298,0,-364.359,-20.3158,-362.552	1/1:134:0,133,0:0:0:133,0:4424,0:-397.691,-40.037,0,-397.691,-40.037,-397.691	1/2:261:0,129,131:0:0:129,131:4316,4596:-723.189,-374.03,-335.197,-349.163,0,-309.728	1/2:358:0,185,173:0:0:185,173:6251,6110:-1003.56,-497.558,-441.867,-505.986,0,-453.908	1/2:96:0,48,47:0:0:48,47:1595,1615:-260.181,-131.248,-116.798,-129.039,0,-114.89	1/2:264:0,118,144:0:0:118,144:3985,5095:-737.771,-414.97,-379.449,-322.786,0,-279.437	1/2:202:0,112,90:0:0:112,90:3794,3198:-567.696,-260.938,-227.222,-307.106,0,-280.013	1/1:247:0,245,0:0:0:245,0:8395,0:-754.322,-73.7524,0,-754.322,-73.7524,-754.322	1/2:5:0,3,2:0:0:3,2:108,72:-14.9146,-6.23466,-5.33157,-9.03788,0,-8.43582	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:7:0,7,0:0:0:7,0:250,0:-22.7918,-2.10721,0,-22.7918,-2.10721,-22.7918	1/1:9:0,9,0:0:0:9,0:314,0:-28.5713,-2.70927,0,-28.5713,-2.70927,-28.5713	1/1:460:0,459,0:0:0:459,0:15356,0:-1379.87,-138.173,0,-1379.87,-138.173,-1379.87	1/1:122:0,122,0:0:0:122,0:4046,0:-362.969,-36.7257,0,-362.969,-36.7257,-362.969	1/1:120:0,120,0:0:0:120,0:3984,0:-357.986,-36.1236,0,-357.986,-36.1236,-357.986	1/2:3:0,2,1:0:0:2,1:70,36:-8.98124,-3.29724,-2.69518,-6.04042,0,-5.73939	1/2:137:0,57,80:0:0:57,80:1926,2843:-387.758,-231.959,-214.8,-156.145,0,-132.062	1/2:64:0,35,28:0:0:35,28:1184,996:-176.941,-81.2389,-70.7028,-95.7662,0,-87.3373	1/2:157:0,92,65:0:0:92,65:3142,2293:-441.069,-187.058,-159.363,-254.358,0,-234.791	1/2:197:0,104,92:0:0:104,92:3484,3189:-541.225,-259.199,-227.892,-282.028,0,-254.333	1/1:166:0,166,0:0:0:166,0:5554,0:-499.751,-49.971,0,-499.751,-49.971,-499.751	1/2:124:0,53,71:0:0:53,71:1773,2475:-344.69,-201.265,-185.31,-143.412,0,-122.039	1/2:163:0,78,85:0:0:78,85:2583,2969:-450.297,-241.844,-218.364,-208.791,0,-183.204	1/2:214:0,110,101:0:0:110,101:3675,3524:-583.825,-286.622,-253.509,-297.214,0,-266.81	1/2:134:0,79,54:0:0:79,54:2695,1936:-375.388,-157.124,-133.342,-218.255,0,-201.999	1/1:199:0,197,0:0:0:197,0:6760,0:-607.725,-59.3029,0,-607.725,-59.3029,-607.725	1/1:174:0,172,2:0:0:172,2:5855,72:-526.501,-51.7772,0,-520.625,-45.5425,-520.023	1/1:2:0,2,0:0:0:2,0:72,0:-6.83426,-0.60206,0,-6.83426,-0.60206,-6.83426	1/1:142:0,142,0:0:0:142,0:4904,0:-440.895,-42.7463,0,-440.895,-42.7463,-440.895	1/2:90:0,49,41:0:0:49,41:1639,1450:-251.008,-118.452,-103.702,-132.9,0,-120.558	1/1:5:0,5,0:0:0:5,0:167,0:-15.2217,-1.50515,0,-15.2217,-1.50515,-15.2217	1/2:168:0,74,94:0:0:74,94:2448,3338: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chr04	24614883	.	ACA	ACT	70100.4	PASS	AB=0.461359;ABP=30.8674;AC=148;AF=0.787234;AN=188;AO=3337;CIGAR=2M1X;DP=4509;DPB=4509.33;DPRA=0;EPP=7249.21;EPPR=2515.4;GTI=1;LEN=1;MEANALT=1.11702;MQM=59.9634;MQMR=59.9265;NS=94;NUMALT=1;ODDS=0.383526;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=0;PRO=0;QA=119154;QR=39575;RO=1157;RPL=0;RPP=7249.21;RPPR=2515.4;RPR=3337;RUN=1;SAF=3337;SAP=7249.21;SAR=0;SRF=1157;SRP=2515.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:21,13:21:739:13:468:-32.2246,0,-56.5986	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:121:0,120:0:0:120:4304:-387.196,-36.1236,0	1/1:77:0,77:0:0:77:2767:-249.271,-23.1793,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:41:22,19:22:770:19:680:-49.1869,0,-57.2782	0/1:102:60,42:60:2038:42:1504:-104.945,0,-152.982	1/1:60:0,60:0:0:60:2121:-191.157,-18.0618,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:3,1:3:92:1:36:-2.39415,0,-7.38043	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:134:76,58:76:2616:58:2080:-147.132,0,-195.35	0/1:43:21,22:21:728:22:780:-57.5787,0,-52.8935	1/1:124:1,122:1:28:122:4365:-390.227,-34.5019,0	0/1:45:22,23:22:745:23:824:-60.937,0,-53.8168	1/1:40:1,39:1:31:39:1404:-123.56,-8.94175,0	1/1:85:0,84:0:0:84:2974:-267.61,-25.2865,0	0/1:166:85,81:85:2903:81:2881:-209.55,0,-211.528	0/1:106:51,55:51:1767:55:1949:-143.775,0,-127.4	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:191:86,102:86:2943:102:3641:-270.973,0,-208.185	0/1:93:56,37:56:1883:37:1308:-90.0238,0,-141.745	1/1:77:0,77:0:0:77:2729:-245.535,-23.1793,0	0/1:34:22,12:22:747:12:417:-27.6252,0,-57.3091	0/1:42:17,25:17:603:25:888:-67.5939,0,-41.9571	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:36:0,35:0:0:35:1260:-113.365,-10.5361,0	1/1:24:0,24:0:0:24:855:-77.2702,-7.22472,0	1/1:118:0,118:0:0:118:4187:-377.008,-35.5215,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:5:1,4:1:31:4:144:-11.8085,0,-1.5943	0/1:76:48,28:48:1616:28:1004:-67.7976,0,-122.842	0/1:6:2,4:2:70:4:140:-11.135,0,-4.84088	0/1:108:54,54:54:1831:54:1940:-142.365,0,-132.545	0/1:12:9,3:9:307:3:104:-6.09045,0,-24.3482	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:102:56,46:56:1952:46:1644:-117.544,0,-145.25	1/1:74:1,69:1:27:69:2449:-217.896,-18.6593,0	0/1:124:79,45:79:2696:45:1604:-107.322,0,-205.556	0/1:95:49,45:49:1715:45:1616:-117.23,0,-126.134	1/1:81:0,81:0:0:81:2891:-260.426,-24.3834,0	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:98:0,98:0:0:98:3516:-316.648,-29.5009,0	0/1:32:24,8:24:838:8:288:-16.6344,0,-66.1043	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	0/1:61:42,19:42:1444:19:684:-43.5275,0,-110.698	0/1:35:22,13:22:751:13:460:-31.1993,0,-57.3691	0/1:8:2,6:2:67:6:216:-17.3823,0,-3.9546	0/1:12:5,7:5:160:7:248:-19.0518,0,-11.1038	0/1:40:20,20:20:672:20:720:-53.0876,0,-48.7503	1/1:30:1,29:1:28:29:1044:-91.4751,-6.23117,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:92:46,46:46:1542:46:1648:-120.914,0,-111.369	0/1:86:43,43:43:1479:43:1525:-111.653,0,-107.514	0/1:26:16,10:16:553:10:360:-24.9175,0,-42.2681	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	1/1:67:0,67:0:0:67:2381:-214.546,-20.169,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:18:0,18:0:0:18:634:-57.3864,-5.41854,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:25:14,11:14:470:11:396:-28.457,0,-35.0939	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	1/1:35:0,34:0:0:34:1216:-109.348,-10.235,0	1/1:74:0,73:0:0:73:2620:-235.766,-21.9752,0	1/1:99:0,99:0:0:99:3550:-319.708,-29.802,0	0/1:80:42,38:42:1428:38:1348:-97.5373,0,-104.729	1/1:41:0,41:0:0:41:1462:-131.876,-12.3422,0	0/1:22:7,15:7:226:15:536:-41.9522,0,-14.034	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:75:0,75:0:0:75:2692:-242.359,-22.5773,0	1/1:121:0,121:0:0:121:4283:-385.646,-36.4246,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:9:2,7:2:70:7:252:-20.3197,0,-3.93806	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:7:3,4:3:106:4:144:-11.2064,0,-7.78189	0/1:13:6,7:6:208:7:252:-19.1156,0,-15.1451	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:14:6,8:6:206:8:284:-21.6889,0,-14.6613	0/1:10:7,3:7:233:3:108:-7.06487,0,-18.2848	1/1:85:0,84:0:0:84:2952:-265.698,-25.2865,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0
chr04	24614927	.	A	C	18560.5	PASS	AB=0.532258;ABP=22.0632;AC=40;AF=0.212766;AN=188;AO=1124;CIGAR=1X;DP=4453;DPB=4453;DPRA=1.28628;EPP=2443.75;EPPR=7225.33;GTI=1;LEN=1;MEANALT=1.04762;MQM=59.9297;MQMR=59.9648;NS=94;NUMALT=1;ODDS=0.451569;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39656;QR=118656;RO=3326;RPL=1124;RPP=2443.75;RPPR=7225.33;RPR=0;RUN=1;SAF=1124;SAP=2443.75;SAR=0;SRF=3326;SRP=7225.33;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:14,20:14:492:20:699:-52.9974,0,-34.3773	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:117:117,0:117:4174:0:0:0,-35.2205,-375.842	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:40:17,23:17:612:23:802:-60.4562,0,-43.3722	0/1:97:42,55:42:1486:55:1950:-146.567,0,-104.829	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:12:12,0:12:406:0:0:0,-3.61236,-36.8642	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:7:7,0:7:230:0:0:0,-2.10721,-21.0212	0/1:8:2,6:2:72:6:197:-15.6431,0,-4.42848	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:131:57,74:57:2040:74:2626:-197.152,0,-144.437	0/1:43:22,21:22:788:21:750:-54.8812,0,-58.3005	0/0:121:119,1:119:4259:1:36:0,-32.8852,-379.89	0/1:45:24,21:24:852:21:740:-53.3764,0,-63.454	0/0:40:39,1:39:1392:1:36:0,-8.44292,-121.981	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.513	0/1:165:80,84:80:2859:84:2949:-215.901,0,-207.812	0/1:102:53,49:53:1904:49:1729:-125.188,0,-140.933	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:191:103,88:103:3671:88:3087:-220.56,0,-273.097	0/1:88:37,51:37:1328:51:1814:-137.051,0,-93.3316	0/0:74:74,0:74:2634:0:0:0,-22.2762,-236.679	0/1:33:12,21:12:428:21:743:-57.2593,0,-28.9248	0/1:42:25,17:25:900:17:612:-42.7702,0,-68.6731	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:116:116,0:116:4139:0:0:0,-34.9195,-372.65	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:76:28,48:28:1004:48:1728:-132.927,0,-67.7976	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8001	0/1:110:56,54:56:2012:54:1905:-138.587,0,-148.24	0/1:12:3,9:3:104:9:320:-25.53,0,-6.09045	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:103:47,56:47:1679:56:1966:-146.205,0,-120.39	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	0/1:122:44,78:44:1580:78:2751:-211.106,0,-105.766	0/1:95:46,49:46:1648:49:1727:-127.116,0,-120.011	0/0:83:83,0:83:2956:0:0:0,-24.9855,-266.272	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:96:96,0:96:3403:0:0:0,-28.8989,-306.487	0/1:29:7,22:7:252:22:780:-61.7932,0,-14.2991	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:60:19,41:19:684:41:1439:-111.583,0,-43.8285	0/1:30:11,19:11:392:19:659:-50.6008,0,-26.5892	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/1:40:20,20:20:712:20:691:-50.4676,0,-52.3655	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:89:46,43:46:1648:43:1502:-108.677,0,-121.817	0/1:83:43,40:43:1535:40:1425:-103.562,0,-113.452	0/1:25:9,16:9:316:16:576:-44.6492,0,-21.2531	0/0:47:47,0:47:1664:0:0:0,-14.1484,-150.045	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:14:14,0:14:487:0:0:0,-4.21442,-44.1592	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.466	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/0:101:100,0:100:3580:0:0:0,-30.103,-322.047	0/1:79:39,40:39:1384:40:1421:-104.405,0,-101.077	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.439	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.599	0/0:120:120,0:120:4262:0:0:0,-36.1236,-383.755	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:7:4,3:4:140:3:99:-7.12937,0,-10.8374	0/1:13:7,6:7:252:6:197:-14.1379,0,-19.1156	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:12:7,5:7:252:5:164:-11.4715,0,-19.4166	0/1:10:3,7:3:104:7:244:-19.2891,0,-6.69251	0/0:81:81,0:81:2883:0:0:0,-24.3834,-259.707	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134
chr04	24614940	.	T	C	16820.5	PASS	AB=0.521239;ABP=10.8508;AC=39;AF=0.207447;AN=188;AO=1045;CIGAR=1X;DP=4292;DPB=4292;DPRA=1.30357;EPP=2272.2;EPPR=7047.27;GTI=1;LEN=1;MEANALT=1.07317;MQM=59.9751;MQMR=59.9568;NS=94;NUMALT=1;ODDS=0.541249;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36542;QR=115444;RO=3244;RPL=1045;RPP=2272.2;RPPR=7047.27;RPR=0;RUN=1;SAF=1045;SAP=2272.2;SAR=0;SRF=3244;SRP=7047.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:14,19:14:492:19:672:-50.8728,0,-34.6784	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:113:113,0:113:4032:0:0:0,-34.0164,-363.07	0/0:72:72,0:72:2562:0:0:0,-21.6742,-230.829	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:39:16,23:16:572:23:820:-62.3823,0,-40.0733	0/1:93:41,52:41:1464:52:1836:-137.507,0,-104.06	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:32:32,0:32:1128:0:0:0,-9.63296,-101.826	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.5894	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/1:7:2,5:2:72:5:172:-13.7108,0,-4.72951	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:127:56,71:56:1965:71:2462:-183.603,0,-138.89	0/1:42:21,21:21:752:21:747:-54.911,0,-55.363	0/0:118:117,1:117:4161:1:36:0,-31.9233,-371.075	0/1:44:23,21:23:828:21:721:-51.9612,0,-61.5988	0/0:36:35,1:35:1237:1:36:0,-7.2388,-108.034	0/0:79:79,0:79:2808:0:0:0,-23.7814,-252.958	0/1:159:80,79:80:2832:79:2747:-199.595,0,-207.252	0/1:95:52,43:52:1851:43:1492:-105.973,0,-138.271	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:179:99,80:99:3514:80:2825:-200.605,0,-262.584	0/1:87:35,52:35:1242:52:1815:-137.441,0,-85.8935	0/0:73:73,0:73:2592:0:0:0,-21.9752,-233.257	0/1:32:12,20:12:432:20:711:-54.6827,0,-29.5882	0/1:41:24,17:24:856:17:596:-41.6256,0,-65.0189	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:111:111,0:111:3928:0:0:0,-33.4143,-353.667	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:71:26,45:26:932:45:1559:-119.224,0,-62.8257	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8001	0/1:99:53,46:53:1876:46:1592:-113.765,0,-139.314	0/1:10:3,7:3:99:7:239:-18.8324,0,-6.22628	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:98:45,53:45:1616:53:1855:-137.726,0,-116.229	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:115:44,71:44:1543:71:2498:-190.455,0,-104.54	0/1:88:44,44:44:1568:44:1568:-114.921,0,-114.921	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/0:81:81,0:81:2855:0:0:0,-24.3834,-257.187	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:96:96,0:96:3424:0:0:0,-28.8989,-308.373	0/1:27:7,19:7:252:19:662:-51.7164,0,-14.8424	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:59:19,40:19:680:40:1388:-107.453,0,-43.7684	0/1:33:12,20:12:423:20:665:-50.263,0,-28.505	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:11:7,4:7:248:4:129:-8.61633,0,-19.3529	0/1:34:18,16:18:648:16:543:-38.9536,0,-48.4169	0/0:28:28,0:28:984:0:0:0,-8.42884,-88.8707	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:89:47,41:47:1684:41:1424:-101.603,0,-124.997	0/1:78:42,36:42:1489:36:1249:-89.2293,0,-110.82	0/1:24:9,15:9:324:15:531:-40.8972,0,-22.2811	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/0:95:95,0:95:3378:0:0:0,-28.5978,-304.236	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/1:22:11,11:11:388:11:396:-29.3601,0,-28.6347	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:99:99,0:99:3521:0:0:0,-29.802,-317.1	0/1:73:37,36:37:1304:36:1288:-94.2484,0,-95.6862	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:21:14,7:14:504:7:248:-16.3426,0,-39.3765	0/0:56:56,0:56:2001:0:0:0,-16.8577,-180.362	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.367	0/0:116:116,0:116:4121:0:0:0,-34.9195,-371.072	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:8:6,2:6:212:2:68:-4.04947,0,-17.0166	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:13:7,6:7:248:6:212:-15.5114,0,-18.7508	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:5:5,0:5:161:0:0:0,-1.50515,-14.8066	0/1:11:7,4:7:248:4:140:-9.63325,0,-19.3529	0/1:10:3,7:3:108:7:244:-19.2891,0,-7.06487	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175
chr04	24699365	.	AAAC	CAAC,CAAA	60458.8	PASS	AB=0.410186,0.584885;ABP=130.949,117.292;AC=146,42;AF=0.776596,0.223404;AN=188;AO=2659,1073;CIGAR=1X3M,1X2M1X;DP=3748;DPB=3748;DPRA=20.1398,1.23382;EPP=5776.96,2333;EPPR=11.6962;GTI=4;LEN=1,4;MEANALT=1.55914,2.13953;MQM=31.2219,41.8155;MQMR=41;NS=94;NUMALT=2;ODDS=0.126309;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=82744,37883;QR=134;RO=4;RPL=0,0;RPP=5776.96,2333;RPPR=11.6962;RPR=2659,1073;RUN=1,1;SAF=0,0;SAP=5776.96,2333;SAR=2659,1073;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:13:0,6,7:0:0:6,7:180,244:-31.7042,-18.9622,-17.156,-13.0393,0,-10.9321	1/1:15:0,15,0:0:0:15,0:443,0:-36.0751,-4.51545,0,-36.0751,-4.51545,-36.0751	1/1:52:0,52,0:0:0:52,0:1560,0:-126.592,-15.6536,0,-126.592,-15.6536,-126.592	1/1:82:1,81,0:1:36:81,0:2527,0:-202.803,-21.1359,0,-203.104,-24.3834,-205.998	1/1:13:0,13,0:0:0:13,0:412,0:-33.8465,-3.91339,0,-33.8465,-3.91339,-33.8465	1/1:11:0,11,0:0:0:11,0:330,0:-26.9919,-3.31133,0,-26.9919,-3.31133,-26.9919	1/2:30:0,16,14:0:0:16,14:490,488:-73.3558,-38.4341,-33.6176,-35.2297,0,-31.0153	1/2:50:0,17,33:0:0:17,33:510,1171:-127.965,-91.8093,-86.6918,-36.45,0,-26.516	1/1:17:0,17,0:0:0:17,0:510,0:-41.5675,-5.11751,0,-41.5675,-5.11751,-41.5675	1/1:40:0,40,0:0:0:40,0:1270,0:-103.756,-12.0412,0,-103.756,-12.0412,-103.756	1/1:35:0,35,0:0:0:35,0:1113,0:-90.9803,-10.5361,0,-90.9803,-10.5361,-90.9803	1/1:31:0,31,0:0:0:31,0:918,0:-74.8315,-9.33193,0,-74.8315,-9.33193,-74.8315	1/1:39:0,39,0:0:0:39,0:1146,0:-93.184,-11.7402,0,-93.184,-11.7402,-93.184	1/1:32:0,32,0:0:0:32,0:1004,0:-82.3067,-9.63296,0,-82.3067,-9.63296,-82.3067	1/1:29:0,29,0:0:0:29,0:927,0:-75.909,-8.72987,0,-75.909,-8.72987,-75.909	1/2:22:0,15,7:0:0:15,7:467,246:-53.3417,-19.9315,-15.416,-33.7345,0,-31.6273	1/1:10:0,10,0:0:0:10,0:300,0:-24.5626,-3.0103,0,-24.5626,-3.0103,-24.5626	1/2:22:0,8,14:0:0:8,14:240,490:-55.3558,-38.3537,-35.9454,-17.2958,0,-13.0814	1/2:14:0,7,7:0:0:7,7:210,249:-34.8156,-19.9553,-17.8481,-15.1676,0,-13.0604	1/2:63:0,22,41:0:0:22,41:704,1464:-166.429,-115.669,-109.047,-51.0696,0,-38.7273	1/2:84:0,34,49:0:0:34,49:1070,1719:-211.822,-134.82,-124.585,-77.0971,0,-62.3466	1/1:50:0,50,0:0:0:50,0:1559,0:-127.057,-15.0515,0,-127.057,-15.0515,-127.057	1/2:12:0,4,8:0:0:4,8:128,288:-32.4704,-23.2583,-22.0542,-9.52258,0,-7.11434	1/2:18:0,12,6:0:0:12,6:382,215:-44.958,-17.4816,-13.8692,-27.8063,0,-26.0001	1/1:20:0,20,0:0:0:20,0:626,0:-51.2078,-6.0206,0,-51.2078,-6.0206,-51.2078	1/2:152:0,76,76:0:0:76,76:2392,2693:-384.47,-212.676,-189.798,-172.109,0,-149.231	1/2:113:1,44,68:1:32:44,68:1399,2402:-287.866,-187.276,-176.237,-98.7146,0,-80.4523	1/2:21:0,8,13:0:0:8,13:252,467:-55.6074,-37.5271,-35.1189,-18.3904,0,-14.477	1/2:167:1,70,95:1:36:70,95:2188,3348:-416.387,-259.813,-241.623,-153.949,0,-128.234	1/2:66:0,26,40:0:0:26,40:814,1407:-170.075,-111.704,-103.877,-58.6772,0,-46.636	1/1:39:0,39,0:0:0:39,0:1227,0:-100.155,-11.7402,0,-100.155,-11.7402,-100.155	2/2:2:0,0,2:0:0:0,2:0,70:-6.05681,-6.05681,-6.05681,-0.60206,-0.60206,0	1/2:15:0,4,11:0:0:4,11:128,390:-40.3697,-31.1516,-29.9475,-9.52258,0,-6.21125	1/1:4:0,4,0:0:0:4,0:120,0:-9.98699,-1.20412,0,-9.98699,-1.20412,-9.98699	1/1:11:0,11,0:0:0:11,0:320,0:-26.1969,-3.31133,0,-26.1969,-3.31133,-26.1969	1/1:11:0,11,0:0:0:11,0:330,0:-26.9919,-3.31133,0,-26.9919,-3.31133,-26.9919	1/1:92:0,92,0:0:0:92,0:2898,0:-236.635,-27.6948,0,-236.635,-27.6948,-236.635	1/1:64:0,64,0:0:0:64,0:1995,0:-162.669,-19.2659,0,-162.669,-19.2659,-162.669	1/1:13:0,13,0:0:0:13,0:386,0:-31.4876,-3.91339,0,-31.4876,-3.91339,-31.4876	1/2:2:0,1,1:0:0:1,1:32,35:-5.41641,-3.1351,-2.83407,-2.59808,0,-2.29705	1/2:79:0,25,54:0:0:25,54:787,1927:-209.86,-153.344,-145.818,-56.8204,0,-40.5648	1/2:23:0,9,14:0:0:9,14:288,486:-58.8223,-38.0656,-35.3564,-21.0634,0,-16.849	1/2:50:0,16,34:0:0:16,34:503,1205:-131.779,-95.6766,-90.8601,-36.4058,0,-26.1708	1/2:22:0,9,13:0:0:9,13:283,467:-57.8173,-37.5209,-34.8116,-20.6081,0,-16.6947	1/1:23:0,23,0:0:0:23,0:731,0:-60.0136,-6.92369,0,-60.0136,-6.92369,-60.0136	1/2:35:0,17,18:0:0:17,18:527,634:-87.6916,-50.0111,-44.8936,-37.9896,0,-32.5711	1/1:27:0,27,0:0:0:27,0:801,0:-65.1601,-8.12781,0,-65.1601,-8.12781,-65.1601	1/2:87:0,31,56:0:0:31,56:949,1991:-224.944,-157.04,-147.708,-68.2046,0,-51.3469	1/2:45:0,16,29:0:0:16,29:499,1031:-116.208,-80.2262,-75.4097,-36.2854,0,-27.5555	1/1:63:0,63,0:0:0:63,0:1972,0:-161.111,-18.9649,0,-161.111,-18.9649,-161.111	1/1:74:0,74,0:0:0:74,0:2358,0:-192.471,-22.2762,0,-192.471,-22.2762,-192.471	1/1:5:0,5,0:0:0:5,0:160,0:-13.3359,-1.50515,0,-13.3359,-1.50515,-13.3359	1/1:37:0,37,0:0:0:37,0:1110,0:-90.1529,-11.1381,0,-90.1529,-11.1381,-90.1529	1/2:59:0,22,37:0:0:22,37:687,1266:-149.835,-100.604,-93.981,-49.5335,0,-38.3953	1/1:5:0,5,0:0:0:5,0:150,0:-12.4163,-1.50515,0,-12.4163,-1.50515,-12.4163	1/2:90:0,40,49:0:0:40,49:1274,1737:-229.649,-137.887,-125.846,-91.825,0,-77.0745	1/2:7:0,5,2:0:0:5,2:160,58:-16.3734,-4.82965,-3.3245,-11.8307,0,-11.2287	1/2:5:0,1,4:0:0:1,4:32,143:-13.9768,-11.6803,-11.3793,-2.5980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chr04	24699373	.	A	G	40868.5	PASS	AB=0.416995;ABP=109.354;AC=146;AF=0.776596;AN=188;AO=2645;CIGAR=1X;DP=3686;DPB=3686;DPRA=39.6237;EPP=5729.2;EPPR=2252.66;GTI=3;LEN=1;MEANALT=1.01075;MQM=31.1875;MQMR=41.8394;NS=94;NUMALT=1;ODDS=0.145981;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93857;QR=37159;RO=1040;RPL=2;RPP=5729.2;RPPR=2252.66;RPR=2643;RUN=1;SAF=0;SAP=5746.55;SAR=2645;SRF=0;SRP=2261.34;SRR=1040;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:5,6:5:180:6:216:-12.6539,0,-12.1156	1/1:15:0,15:0:0:15:540:-38.9119,-4.51545,0	1/1:52:0,52:0:0:52:1864:-135.932,-15.6536,0	1/1:82:0,82:0:0:82:2914:-220.455,-24.6845,0	1/1:12:0,12:0:0:12:432:-33.1566,-3.61236,0	1/1:10:0,10:0:0:10:356:-26.3105,-3.0103,0	0/1:30:14,16:14:504:16:576:-33.5055,0,-34.5642	0/1:47:31,16:31:1108:16:563:-27.494,0,-82.2649	1/1:16:0,16:0:0:16:572:-41.9858,-4.81648,0	1/1:37:0,37:0:0:37:1306:-100.675,-11.1381,0	1/1:35:0,35:0:0:35:1241:-94.961,-10.5361,0	1/1:31:0,31:0:0:31:1100:-80.8618,-9.33193,0	1/1:39:0,39:0:0:39:1400:-101.142,-11.7402,0	1/1:32:0,32:0:0:32:1120:-86.05,-9.63296,0	1/1:28:0,28:0:0:28:1004:-77.0361,-8.42884,0	0/1:22:7,15:7:248:15:536:-33.8191,0,-15.588	1/1:10:0,10:0:0:10:360:-26.4152,-3.0103,0	0/1:22:14,8:14:504:8:284:-14.4625,0,-37.0579	0/1:13:6,7:6:216:7:252:-14.6643,0,-15.2304	0/1:61:39,22:39:1385:22:792:-42.4225,0,-102.698	0/1:82:47,35:47:1667:35:1247:-69.3861,0,-120.411	1/1:49:0,49:0:0:49:1748:-131.201,-14.7505,0	0/1:11:7,4:7:252:4:140:-7.84669,0,-19.1863	0/1:17:6,11:6:216:11:396:-25.2899,0,-14.248	1/1:20:0,20:0:0:20:702:-53.3662,-6.0206,0	0/1:151:75,76:75:2688:76:2697:-159.751,0,-189.455	0/1:107:63,44:63:2252:44:1536:-86.3639,0,-164.721	0/1:20:13,7:13:468:7:244:-12.9532,0,-35.4907	0/1:164:94,70:94:3353:70:2496:-138.851,0,-242.017	0/1:65:39,26:39:1387:26:932:-50.6682,0,-102.279	1/1:39:0,39:0:0:39:1387:-105.205,-11.7402,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.52101	0/1:15:11,4:11:396:4:144:-6.78634,0,-30.1326	1/1:4:0,4:0:0:4:131:-10.2833,-1.20412,0	1/1:11:0,11:0:0:11:388:-28.3285,-3.31133,0	1/1:11:0,11:0:0:11:392:-28.9231,-3.31133,0	1/1:92:0,91:0:0:91:3241:-246.127,-27.3937,0	1/1:62:0,62:0:0:62:2208:-165.895,-18.6639,0	1/1:12:0,12:0:0:12:423:-31.296,-3.61236,0	0/1:2:1,1:1:36:1:36:-2.45248,0,-2.91895	0/1:79:54,25:54:1936:25:892:-43.2058,0,-146.459	0/1:23:14,9:14:504:9:324:-18.1235,0,-36.8091	0/1:49:33,16:33:1168:16:576:-28.8374,0,-87.5088	0/1:22:13,9:13:468:9:320:-17.9131,0,-34.8886	1/1:22:0,22:0:0:22:779:-60.2163,-6.62266,0	0/1:34:17,17:17:612:17:608:-35.4234,0,-42.9786	1/1:28:0,28:0:0:28:995:-72.5154,-8.42884,0	0/1:81:54,27:54:1932:27:968:-47.5236,0,-144.143	0/1:43:29,14:29:1031:14:485:-24.262,0,-75.4055	1/1:61:0,61:0:0:61:2189:-166.564,-18.3628,0	1/1:73:0,73:0:0:73:2581:-196.677,-21.9752,0	1/1:5:0,5:0:0:5:171:-13.6151,-1.50515,0	1/1:36:0,36:0:0:36:1288:-94.1321,-10.8371,0	0/1:59:37,22:37:1324:22:780:-41.3823,0,-98.5977	1/1:5:0,5:0:0:5:180:-13.3527,-1.50515,0	0/1:89:49,40:49:1756:40:1406:-81.7231,0,-127.624	0/1:6:2,4:2:63:4:144:-9.49561,0,-4.09356	0/1:5:4,1:4:140:1:36:-1.54939,0,-11.1366	0/1:17:12,5:12:428:5:180:-8.93336,0,-32.7494	0/1:29:14,15:14:489:15:540:-32.8118,0,-34.0136	1/1:74:0,74:0:0:74:2617:-199.9,-22.2762,0	1/1:7:0,7:0:0:7:252:-19.4103,-2.10721,0	0/1:106:51,55:51:1820:55:1928:-113.108,0,-125.241	0/1:85:56,29:56:2004:29:1019:-49.125,0,-150.872	0/1:39:30,9:30:1076:9:324:-13.1688,0,-83.1193	1/1:40:0,40:0:0:40:1432:-109.622,-12.0412,0	1/1:47:1,46:1:36:46:1644:-122.398,-10.6274,0	1/1:91:0,91:0:0:91:3206:-246.388,-27.3937,0	1/1:25:0,25:0:0:25:891:-67.4047,-7.52575,0	1/1:16:0,16:0:0:16:568:-41.8816,-4.81648,0	1/1:30:0,30:0:0:30:1061:-80.2694,-9.0309,0	0/1:19:12,7:12:428:7:248:-12.5114,0,-30.653	1/1:53:0,53:0:0:53:1864:-135.673,-15.9546,0	1/1:26:0,26:0:0:26:916:-67.6951,-7.82678,0	1/1:28:0,28:0:0:28:989:-76.11,-8.42884,0	1/1:74:0,74:0:0:74:2608:-199.168,-22.2762,0	0/1:33:12,21:12:432:21:748:-45.0104,0,-27.7184	1/1:48:0,48:0:0:48:1696:-124.22,-14.4494,0	0/1:14:9,5:9:324:5:180:-8.90447,0,-24.3273	1/1:34:2,32:2:72:32:1148:-80.2975,-3.5451,0	1/1:40:0,40:0:0:40:1436:-104.536,-12.0412,0	1/1:39:0,39:0:0:39:1375:-104.996,-11.7402,0	1/1:35:0,35:0:0:35:1237:-94.9847,-10.5361,0	1/1:28:0,28:0:0:28:996:-77.0305,-8.42884,0	0/1:8:5,3:5:180:3:108:-6.14447,0,-13.7884	1/1:47:0,47:0:0:47:1641:-124.907,-14.1484,0	0/1:14:10,4:10:356:4:140:-6.4194,0,-26.4282	1/1:24:0,24:0:0:24:864:-62.6789,-7.22472,0	1/1:23:0,23:0:0:23:824:-60.2735,-6.92369,0	1/1:25:0,25:0:0:25:872:-66.1649,-7.52575,0	0/1:51:29,22:29:1040:22:777:-44.5395,0,-75.5251	0/1:32:18,14:18:644:14:504:-29.022,0,-46.319	1/1:87:0,87:0:0:87:3055:-232.727,-26.1896,0	1/1:38:0,38:0:0:38:1331:-101.709,-11.4391,0
chr04	24699396	.	A	G	41495.1	PASS	AB=0.414688;ABP=117.496;AC=146;AF=0.776596;AN=188;AO=2678;CIGAR=1X;DP=3745;DPB=3745;DPRA=20.1237;EPP=5818.21;EPPR=2313.46;GTI=3;LEN=1;MEANALT=1.03226;MQM=31.1669;MQMR=41.8402;NS=94;NUMALT=1;ODDS=0.212085;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95779;QR=38146;RO=1064;RPL=2678;RPP=5818.21;RPPR=2313.46;RPR=0;RUN=1;SAF=0;SAP=5818.21;SAR=2678;SRF=0;SRP=2313.46;SRR=1064;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:7,6:7:252:6:212:-11.9464,0,-17.7825	1/1:15:0,15:0:0:15:536:-38.8076,-4.51545,0	1/1:53:0,53:0:0:53:1886:-137.965,-15.9546,0	1/1:82:0,82:0:0:82:2932:-220.938,-24.6845,0	1/1:13:0,13:0:0:13:464:-35.6269,-3.91339,0	1/1:11:0,11:0:0:11:396:-29.0276,-3.31133,0	0/1:30:14,16:14:500:16:572:-33.3646,0,-34.2429	0/1:49:32,17:32:1152:17:600:-29.6395,0,-85.1693	1/1:17:0,17:0:0:17:588:-43.5858,-5.11751,0	1/1:39:0,39:0:0:39:1391:-106.44,-11.7402,0	1/1:36:0,36:0:0:36:1296:-98.4546,-10.8371,0	1/1:31:0,31:0:0:31:1112:-81.1735,-9.33193,0	1/1:39:0,39:0:0:39:1404:-101.246,-11.7402,0	1/1:31:0,31:0:0:31:1112:-84.6879,-9.33193,0	1/1:29:0,29:0:0:29:1040:-79.7852,-8.72987,0	0/1:22:7,15:7:243:15:536:-33.8191,0,-15.1513	1/1:10:0,10:0:0:10:360:-26.4152,-3.0103,0	0/1:22:14,8:14:504:8:279:-14.2218,0,-37.0579	0/1:14:7,7:7:252:7:252:-14.3633,0,-18.062	0/1:62:41,21:41:1472:21:756:-39.3724,0,-110.02	0/1:82:47,35:47:1688:35:1252:-69.6734,0,-122.504	1/1:51:0,51:0:0:51:1832:-136.159,-15.3525,0	0/1:12:8,4:8:288:4:144:-7.68943,0,-22.0542	0/1:18:6,12:6:216:12:432:-27.7381,0,-13.947	1/1:20:0,20:0:0:20:711:-54.0341,-6.0206,0	0/1:149:73,76:73:2624:76:2713:-160.733,0,-184.372	0/1:113:68,45:68:2429:45:1600:-88.9223,0,-177.857	0/1:21:13,8:13:464:8:288:-15.686,0,-34.8682	0/1:171:98,73:98:3505:73:2605:-144.662,0,-252.924	0/1:64:39,25:39:1400:25:888:-47.9389,0,-103.67	1/1:41:0,41:0:0:41:1468:-111.131,-12.3422,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.10258	0/1:15:11,4:11:396:4:144:-6.78634,0,-30.1326	1/1:4:0,4:0:0:4:144:-10.7402,-1.20412,0	1/1:10:0,10:0:0:10:358:-25.8366,-3.0103,0	1/1:11:0,11:0:0:11:396:-29.0276,-3.31133,0	1/1:94:0,94:0:0:94:3371:-255.832,-28.2968,0	1/1:62:0,62:0:0:62:2217:-166.063,-18.6639,0	1/1:13:0,13:0:0:13:468:-33.9403,-3.91339,0	0/1:2:1,1:1:36:1:36:-2.45248,0,-2.91895	0/1:80:54,26:54:1940:26:928:-45.5313,0,-146.477	0/1:23:14,9:14:495:9:324:-18.1235,0,-36.0546	0/1:48:32,16:32:1148:16:572:-28.9975,0,-86.9878	0/1:22:13,9:13:468:9:324:-18.0547,0,-34.8886	1/1:23:0,23:0:0:23:828:-63.5344,-6.92369,0	0/1:36:19,17:19:684:17:608:-34.8213,0,-48.6984	1/1:30:0,30:0:0:30:1076:-78.1532,-9.0309,0	0/1:87:56,31:56:2008:31:1104:-56.4344,0,-148.995	0/1:45:28,17:28:1004:17:602:-32.6242,0,-72.6017	1/1:62:0,62:0:0:62:2192:-167.624,-18.6639,0	1/1:76:0,76:0:0:76:2728:-206.071,-22.8783,0	1/1:5:0,5:0:0:5:180:-14.0509,-1.50515,0	1/1:36:0,36:0:0:36:1292:-94.236,-10.8371,0	0/1:56:35,21:35:1256:21:756:-39.8585,0,-93.49	1/1:5:0,5:0:0:5:176:-13.2469,-1.50515,0	0/1:89:50,39:50:1792:39:1404:-80.4541,0,-131.018	0/1:7:2,5:2:68:5:180:-11.9437,0,-4.24623	0/1:5:4,1:4:144:1:36:-1.54939,0,-11.4548	0/1:17:12,5:12:428:5:176:-8.79037,0,-32.7494	0/1:31:15,15:15:540:15:531:-31.8687,0,-37.9578	1/1:75:0,75:0:0:75:2684:-203.908,-22.5773,0	1/1:7:0,7:0:0:7:252:-19.4103,-2.10721,0	0/1:104:51,53:51:1832:53:1900:-110.668,0,-128.333	0/1:84:56,28:56:2007:28:1004:-47.4798,0,-151.301	0/1:42:33,9:33:1184:9:320:-12.1241,0,-91.282	1/1:40:0,39:0:0:39:1404:-106.848,-11.7402,0	1/1:46:1,45:1:36:45:1620:-120.069,-10.3264,0	1/1:92:0,92:0:0:92:3282:-250.808,-27.6948,0	1/1:27:0,27:0:0:27:966:-73.1745,-8.12781,0	1/1:16:0,16:0:0:16:572:-41.9858,-4.81648,0	1/1:30:0,30:0:0:30:1076:-81.2419,-9.0309,0	0/1:20:13,7:13:468:7:252:-12.2723,0,-33.8438	1/1:54:0,54:0:0:54:1921:-139.147,-16.2556,0	1/1:24:0,24:0:0:24:852:-62.6779,-7.22472,0	1/1:28:0,28:0:0:28:996:-76.7213,-8.42884,0	1/1:75:0,75:0:0:75:2684:-203.416,-22.5773,0	0/1:35:13,22:13:464:22:792:-47.229,0,-29.2719	1/1:50:0,50:0:0:50:1781:-129.89,-15.0515,0	0/1:14:9,5:9:324:5:180:-8.90447,0,-24.3273	1/1:35:2,33:2:72:33:1188:-83.1871,-3.84613,0	1/1:44:0,43:0:0:43:1540:-111.979,-12.9443,0	1/1:36:0,36:0:0:36:1292:-96.6333,-10.8371,0	1/1:35:0,35:0:0:35:1251:-95.7292,-10.5361,0	1/1:28:0,28:0:0:28:1000:-77.2075,-8.42884,0	0/1:8:5,3:5:180:3:108:-6.14447,0,-13.7884	1/1:48:0,48:0:0:48:1720:-129.484,-14.4494,0	0/1:14:10,4:10:360:4:144:-6.52581,0,-26.7305	1/1:25:0,25:0:0:25:900:-65.2914,-7.52575,0	1/1:23:0,23:0:0:23:828:-60.3775,-6.92369,0	1/1:25:0,25:0:0:25:891:-67.1981,-7.52575,0	0/1:52:30,22:30:1067:22:792:-45.1317,0,-77.6418	0/1:33:19,14:19:684:14:487:-28.0093,0,-48.0329	1/1:84:0,84:0:0:84:3004:-227.11,-25.2865,0	1/1:36:0,36:0:0:36:1288:-97.6937,-10.8371,0
chr04	24758990	.	T	G	64296.4	PASS	AB=0.524117;ABP=31.1849;AC=40;AF=0.212766;AN=188;AO=2952;CIGAR=1X;DP=14121;DPB=14121;DPRA=1.05169;EPP=10.6634;EPPR=4.62144;GTI=0;LEN=1;MEANALT=1.07692;MQM=48.0207;MQMR=59.9748;NS=94;NUMALT=1;ODDS=8.19588;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104911;QR=398710;RO=11161;RPL=25;RPP=6197.89;RPPR=23849.5;RPR=2927;RUN=1;SAF=1450;SAP=4.99935;SAR=1502;SRF=5671;SRP=9.38425;SRR=5490;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:104:48,56:48:1720:56:1962:-134.975,0,-123.778	0/0:256:255,1:255:9104:1:36:0,-73.4654,-815.737	0/0:252:252,0:252:9015:0:0:0,-75.8596,-811.329	0/0:243:241,2:241:8582:2:72:0,-66.5137,-765.743	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.348	0/1:154:63,91:63:2255:91:3230:-237.895,0,-156.854	0/1:241:112,128:112:3991:128:4531:-308.136,0,-286.774	0/0:163:162,1:162:5791:1:36:0,-45.4696,-517.703	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.757	0/0:154:154,0:154:5489:0:0:0,-46.3586,-494.135	0/0:163:163,0:163:5819:0:0:0,-49.0679,-523.735	0/0:167:167,0:167:5987:0:0:0,-50.272,-538.934	0/0:161:161,0:161:5754:0:0:0,-48.4658,-517.971	0/0:180:180,0:180:6420:0:0:0,-54.1854,-577.759	0/1:159:82,77:82:2940:77:2746:-187.534,0,-216.97	0/0:154:154,0:154:5478:0:0:0,-46.3586,-493.15	0/1:109:56,53:56:1999:53:1865:-124.352,0,-147.371	0/1:93:52,41:52:1868:41:1445:-95.9193,0,-140.403	0/1:296:134,160:134:4774:160:5673:-406.685,0,-341	0/1:196:87,109:87:3103:109:3865:-276.713,0,-220.005	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/1:89:38,51:38:1360:51:1802:-130.151,0,-95.9089	0/0:172:165,7:165:5906:7:252:0,-30.1162,-509.97	0/0:113:113,0:113:4031:0:0:0,-34.0164,-362.979	0/1:407:182,225:182:6503:225:8016:-585.553,0,-462.813	0/1:277:142,135:142:5058:135:4799:-328.955,0,-371.981	0/1:89:43,46:43:1527:46:1632:-114.727,0,-110.931	0/1:313:153,160:153:5429:160:5715:-408.636,0,-394.521	0/1:118:49,69:49:1760:69:2433:-174.903,0,-123.162	0/0:145:145,0:145:5176:0:0:0,-43.6493,-465.98	0/1:6:2,4:2:72:4:141:-9.52116,0,-5.03054	0/1:36:14,22:14:500:22:779:-56.3883,0,-34.4991	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:474:474,0:474:16973:0:0:0,-142.688,-1527.19	0/0:142:140,2:140:4991:2:72:0,-35.9095,-442.498	0/0:184:184,0:184:6608:0:0:0,-55.3895,-594.789	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:248:127,121:127:4548:121:4309:-299.335,0,-334.831	0/1:87:39,48:39:1400:48:1703:-123.634,0,-100.11	0/1:273:133,140:133:4752:140:5000:-342.708,0,-345.635	0/1:171:89,82:89:3196:82:2928:-203.366,0,-236.386	0/0:168:168,0:168:6015:0:0:0,-50.573,-541.454	0/1:113:41,72:41:1468:72:2551:-189.207,0,-98.3997	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.518	0/1:134:61,73:61:2192:73:2601:-185.739,0,-157.207	0/1:123:55,67:55:1964:67:2355:-167.96,0,-139.949	0/0:172:169,2:169:6059:2:72:0,-44.9836,-538.596	0/0:175:175,0:175:6240:0:0:0,-52.6802,-561.694	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:266:265,1:265:9466:1:36:0,-77.3378,-849.165	0/1:17:11,6:11:396:6:212:-13.7222,0,-30.8652	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:135:55,80:55:1972:80:2864:-203.893,0,-137.116	0/1:85:35,50:35:1256:50:1767:-127.482,0,-87.7577	0/1:6:3,3:3:104:3:108:-8.00059,0,-7.89663	0/1:34:14,20:14:504:20:720:-53.8528,0,-35.4631	0/1:121:52,69:52:1863:69:2459:-178.503,0,-131.524	0/0:222:222,0:222:7925:0:0:0,-66.8287,-713.271	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:141:68,73:68:2424:73:2607:-187.593,0,-175.971	0/1:256:137,119:137:4880:119:4232:-285.447,0,-362.289	0/1:91:49,42:49:1756:42:1486:-99.838,0,-130.93	0/0:93:90,3:90:3183:3:108:0,-18.1172,-276.818	0/0:232:228,4:228:8140:4:144:0,-57.11,-719.885	0/0:166:165,1:165:5900:1:36:0,-46.5834,-527.72	0/0:85:85,0:85:3023:0:0:0,-25.5875,-272.301	0/0:123:123,0:123:4399:0:0:0,-37.0267,-396.083	0/0:230:230,0:230:8174:0:0:0,-69.2369,-735.669	0/1:24:13,11:13:459:11:396:-27.9919,0,-34.4194	0/0:77:77,0:77:2748:0:0:0,-23.1793,-247.563	0/0:103:103,0:103:3683:0:0:0,-31.0061,-331.673	0/0:285:285,0:285:10175:0:0:0,-85.7935,-915.679	0/0:213:213,0:213:7603:0:0:0,-64.1194,-683.883	0/1:172:84,88:84:2999:88:3137:-214.353,0,-218.364	0/0:165:163,2:163:5832:2:72:0,-43.2233,-518.546	0/1:17:10,7:10:356:7:237:-15.0205,0,-27.2637	0/0:177:176,0:176:6287:0:0:0,-52.9813,-565.565	0/0:126:126,0:126:4502:0:0:0,-37.9298,-405.348	0/0:246:245,0:245:8754:0:0:0,-73.7523,-787.486	0/0:220:219,0:219:7823:0:0:0,-65.9256,-703.738	0/0:156:156,0:156:5608:0:0:0,-46.9607,-504.839	0/1:195:100,95:100:3570:95:3381:-235.83,0,-262.806	0/0:340:337,3:337:12041:3:108:0,-92.8649,-1074.06	0/1:94:63,31:63:2264:31:1104:-66.7299,0,-175.725	0/0:170:170,0:170:6069:0:0:0,-51.1751,-546.309	0/0:153:153,0:153:5435:0:0:0,-46.0576,-489.275	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/1:175:89,86:89:3170:86:3053:-206.104,0,-232.844	0/1:174:64,110:64:2300:110:3915:-289.948,0,-154.877	0/0:160:160,0:160:5682:0:0:0,-48.1648,-511.5	0/0:266:266,0:266:9491:0:0:0,-80.074,-854.15
chr04	24759020	.	GACCG	GACCA,AACCA	383764	PASS	AB=0.469384,0.52581;ABP=48.7496,35.5167;AC=148,40;AF=0.787234,0.212766;AN=188;AO=11042,2984;CIGAR=4M1X,1X3M1X;DP=14106;DPB=14109.4;DPRA=0,1.09433;EPP=8.82816,4.68693;EPPR=3.73412;GTI=0;LEN=1,5;MEANALT=2.25532,2.64815;MQM=59.9759,48.0372;MQMR=60;NS=94;NUMALT=2;ODDS=6.62363;PAIRED=0,0;PAIREDR=0;PAO=0,18;PQA=0,468;PQR=0;PRO=0;QA=394075,104029;QR=401;RO=12;RPL=11042,2984;RPP=23980.4,6482.68;RPPR=29.068;RPR=0,0;RUN=1,1;SAF=5607,1468;SAP=8.82816,4.68693;SAR=5435,1516;SRF=7;SRP=3.73412;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:106:0,48,57:0:0:48,57:1712,1984:-289.812,-150.24,-135.79,-139.556,0,-122.398	1/1:252:0,251,1:0:0:251,1:8958,36:-805.836,-75.5585,0,-802.898,-72.2613,-802.597	1/1:253:0,252,0:0:0:252,0:8997,0:-809.47,-75.8596,0,-809.47,-75.8596,-809.47	1/1:242:0,238,2:0:0:238,2:8442,71:-759.508,-71.6451,0,-753.912,-65.9824,-753.31	1/1:113:0,113,0:0:0:113,0:4040,0:-363.788,-34.0164,0,-363.788,-34.0164,-363.788	1/1:61:0,61,0:0:0:61,0:2174,0:-195.924,-18.3628,0,-195.924,-18.3628,-195.924	1/2:162:0,67,95:0:0:67,95:2372,3308:-456.057,-262.838,-242.669,-193.567,0,-164.97	1/2:248:0,116,132:0:0:116,132:4135,4602:-684.784,-347.71,-312.791,-337.233,0,-297.497	1/1:162:0,161,1:0:0:161,1:5726,36:-515.094,-48.4658,0,-512.157,-45.1686,-511.856	1/1:93:1,91,0:1:22:91,0:3228,0:-288.518,-25.7298,0,-288.819,-27.3937,-290.496	1/1:151:0,151,0:0:0:151,0:5392,0:-485.41,-45.4555,0,-485.41,-45.4555,-485.41	1/1:160:0,159,0:0:0:159,0:5699,0:-512.667,-47.8638,0,-512.667,-47.8638,-512.667	1/1:162:0,162,0:0:0:162,0:5795,0:-521.664,-48.7669,0,-521.664,-48.7669,-521.664	1/1:158:1,157,0:1:36:157,0:5627,0:-502.951,-43.9645,0,-503.252,-47.2617,-506.19	1/1:178:0,176,0:0:0:176,0:6294,0:-566.27,-52.9813,0,-566.27,-52.9813,-566.27	1/2:159:0,80,79:0:0:80,79:2864,2738:-444.75,-211.179,-187.097,-233.915,0,-210.134	1/1:153:0,152,0:0:0:152,0:5425,0:-488.089,-45.7566,0,-488.089,-45.7566,-488.089	1/2:111:0,56,54:0:0:56,54:1999,1884:-304.581,-141.596,-124.738,-163.044,0,-146.788	1/2:93:0,50,41:0:0:50,41:1780,1408:-252.636,-107.544,-92.4921,-145.1,0,-132.758	1/2:299:0,134,164:0:0:134,164:4779,5691:-838.565,-448.982,-408.644,-389.68,0,-340.311	1/2:193:0,85,107:0:0:85,107:3027,3736:-538.76,-292.032,-266.445,-246.873,0,-214.663	1/1:69:0,68,0:0:0:68,0:2432,0:-218.884,-20.47,0,-218.884,-20.47,-218.884	1/2:92:0,40,52:0:0:40,52:1415,1819:-258.507,-143.249,-131.208,-115.605,0,-99.9518	1/1:169:0,162,7:0:0:162,7:5795,252:-521.316,-48.7669,0,-502.101,-29.5703,-499.994	1/1:109:0,109,0:0:0:109,0:3908,0:-351.913,-32.8123,0,-351.913,-32.8123,-351.913	1/2:407:0,180,224:0:0:180,224:6413,7774:-1142.33,-619.602,-565.417,-522.848,0,-455.417	1/2:277:0,142,135:0:0:142,135:5065,4703:-775.975,-363.071,-320.324,-412.889,0,-372.25	1/2:86:1,42,43:1:31:42,43:1504,1518:-238,-115.638,-105.483,-120.213,0,-109.756	1/2:317:0,152,164:0:0:152,164:5435,5722:-897.42,-454.247,-408.49,-443.163,0,-393.794	1/2:118:0,49,69:0:0:49,69:1745,2408:-330.022,-187.787,-173.037,-142.582,0,-121.811	1/1:145:0,142,0:0:0:142,0:5065,0:-455.638,-42.7463,0,-455.638,-42.7463,-455.638	1/2:6:0,2,4:0:0:2,4:72,144:-16.0387,-10.1462,-9.54413,-6.23466,0,-5.03054	1/2:37:0,15,21:0:0:15,21:540,727:-101.035,-56.9621,-52.4467,-44.1526,0,-37.831	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:469:0,466,0:0:0:466,0:16691,0:-1501.56,-140.28,0,-1501.56,-140.28,-1501.56	1/1:144:1,141,2:1:36:141,2:5038,63:-449.996,-39.4928,0,-445.232,-37.409,-447.567	1/1:185:0,184,0:0:0:184,0:6565,0:-590.719,-55.3895,0,-590.719,-55.3895,-590.719	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/2:247:0,127,120:0:0:127,120:4503,4215:-696.505,-329.642,-291.412,-366.849,0,-330.726	1/2:89:0,39,50:0:0:39,50:1400,1719:-250.163,-135.952,-124.212,-114.559,0,-99.5075	1/2:272:0,130,142:0:0:130,142:4609,4953:-754.372,-378.896,-339.762,-375.635,0,-332.889	1/2:175:0,89,85:0:0:89,85:3200,2966:-493.44,-232.358,-205.566,-261.071,0,-235.483	1/1:170:0,169,0:0:0:169,0:6002,0:-539.989,-50.8741,0,-539.989,-50.8741,-539.989	1/2:115:0,43,72:0:0:43,72:1540,2505:-323.519,-197.921,-184.977,-125.949,0,-104.275	1/1:131:0,130,0:0:0:130,0:4640,0:-417.414,-39.1339,0,-417.414,-39.1339,-417.414	1/2:133:0,58,74:0:0:58,74:2088,2574:-371.559,-201.178,-183.718,-170.478,0,-148.202	1/2:124:0,55,69:0:0:55,69:1956,2379:-345.515,-186.102,-169.545,-159.758,0,-138.987	1/1:169:0,165,2:0:0:165,2:5889,72:-529.781,-49.67,0,-523.916,-43.7861,-523.314	1/1:173:0,171,0:0:0:171,0:6108,0:-549.461,-51.4761,0,-549.461,-51.4761,-549.461	1/1:15:0,15,0:0:0:15,0:521,0:-47.2163,-4.51545,0,-47.2163,-4.51545,-47.2163	1/1:267:0,265,1:0:0:265,1:9457,33:-850.77,-79.773,0,-848.659,-77.7071,-848.358	1/2:20:0,13,7:0:0:13,7:468,251:-58.3674,-20.1733,-16.26,-38.5463,0,-36.439	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:133:2,52,79:2:72:52,79:1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chr04	24759036	.	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chr04	24891871	.	G	A	107860	PASS	AB=0.446693;ABP=66.4443;AC=148;AF=0.787234;AN=188;AO=5010;CIGAR=1X;DP=6444;DPB=6444;DPRA=0;EPP=10882.1;EPPR=3108.22;GTI=2;LEN=1;MEANALT=1;MQM=59.6088;MQMR=59.3668;NS=94;NUMALT=1;ODDS=0.160816;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179572;QR=51263;RO=1434;RPL=0;RPP=10882.1;RPPR=3116.9;RPR=5010;RUN=1;SAF=5010;SAP=10882.1;SAR=0;SRF=1433;SRP=3108.22;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:13,11:13:468:11:396:-28.7498,0,-35.2349	1/1:79:1,78:1:36:78:2808:-249.328,-20.1831,0	1/1:159:0,159:0:0:159:5700:-512.889,-47.8638,0	1/1:108:0,108:0:0:108:3878:-349.202,-32.5112,0	1/1:54:1,53:1:36:53:1904:-168.035,-12.6573,0	1/1:36:0,36:0:0:36:1273:-114.855,-10.8371,0	0/1:113:74,39:74:2660:39:1404:-92.6382,0,-205.601	0/1:101:69,32:69:2434:32:1148:-73.2176,0,-187.882	1/1:65:1,64:1:36:64:2292:-202.913,-15.9687,0	1/1:52:0,52:0:0:52:1868:-168.392,-15.6536,0	0/1:67:26,41:26:919:41:1472:-112.603,0,-62.8434	1/1:73:0,73:0:0:73:2624:-236.334,-21.9752,0	1/1:85:0,85:0:0:85:3060:-275.59,-25.5876,0	1/1:90:0,90:0:0:90:3227:-290.628,-27.0927,0	1/1:79:0,79:0:0:79:2832:-255.089,-23.7814,0	0/1:66:34,32:34:1216:32:1144:-83.3877,0,-89.8704	1/1:108:0,108:0:0:108:3872:-348.329,-32.5112,0	0/1:98:46,52:46:1656:52:1868:-138.821,0,-119.811	0/1:62:20,42:20:716:42:1512:-117.682,0,-46.0957	0/1:90:49,41:49:1756:41:1476:-106.043,0,-130.985	0/1:98:39,59:39:1400:59:2109:-160.558,0,-96.5625	1/1:40:2,38:2:72:38:1364:-116.223,-5.20448,0	0/1:34:21,13:21:752:13:468:-32.2237,0,-57.7565	0/1:41:5,36:5:180:36:1292:-104.209,0,-4.20983	1/1:42:0,42:0:0:42:1500:-135.126,-12.6433,0	0/1:135:91,44:91:3230:44:1584:-102.165,0,-250.196	0/1:169:101,68:101:3609:68:2444:-169.331,0,-273.424	0/1:42:28,14:28:1008:14:504:-33.0456,0,-78.3849	0/1:114:77,37:77:2745:37:1313:-84.1499,0,-212.74	0/1:48:23,25:23:828:25:896:-66.5109,0,-60.384	1/1:66:0,66:0:0:66:2360:-212.651,-19.868,0	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	1/1:7:0,7:0:0:7:252:-22.9835,-2.10721,0	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	1/1:272:0,272:0:0:272:9748:-877.222,-81.8802,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:107:0,107:0:0:107:3852:-346.63,-32.2102,0	0/1:9:1,8:1:36:8:288:-23.5488,0,-0.889005	0/1:58:37,21:37:1328:21:740:-49.452,0,-102.343	0/1:54:26,28:26:932:28:1004:-74.4064,0,-67.9432	0/1:46:23,23:23:824:23:820:-60.2733,0,-60.6313	0/1:86:50,36:50:1800:36:1288:-90.328,0,-136.354	1/1:102:0,102:0:0:102:3668:-330.295,-30.7051,0	0/1:50:31,19:31:1108:19:680:-46.4777,0,-84.9443	1/1:69:0,69:0:0:69:2469:-222.35,-20.7711,0	0/1:83:50,33:50:1781:33:1184:-81.8796,0,-135.522	0/1:94:51,43:51:1832:43:1544:-110.867,0,-136.809	1/1:36:0,36:0:0:36:1296:-116.942,-10.8371,0	1/1:52:0,52:0:0:52:1857:-167.406,-15.6536,0	1/1:17:0,17:0:0:17:608:-55.0497,-5.11751,0	1/1:77:0,77:0:0:77:2760:-248.595,-23.1793,0	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.2962	1/1:19:0,19:0:0:19:684:-61.8739,-5.71957,0	0/1:64:48,16:48:1728:16:568:-32.1241,0,-136.529	0/1:39:25,14:25:881:14:504:-33.9556,0,-67.824	0/1:8:1,7:1:36:7:252:-20.6198,0,-1.19003	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0	0/1:36:27,9:27:964:9:324:-18.6688,0,-76.2141	1/1:122:1,121:1:36:121:4327:-385.976,-33.1274,0	1/1:14:0,14:0:0:14:504:-45.6957,-4.21442,0	0/1:56:38,18:38:1368:18:648:-41.7933,0,-106.518	0/1:80:38,42:38:1345:42:1508:-111.932,0,-97.2383	0/1:44:25,19:25:881:19:684:-48.645,0,-66.3605	1/1:31:1,30:1:36:30:1080:-93.9103,-5.73366,0	1/1:83:0,83:0:0:83:2965:-266.95,-24.9855,0	1/1:53:2,51:2:72:51:1836:-158.682,-9.11787,0	1/1:37:0,37:0:0:37:1332:-120.173,-11.1381,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:87:0,87:0:0:87:3112:-280.301,-26.1896,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:57:0,57:0:0:57:2033:-183.164,-17.1587,0	1/1:49:0,49:0:0:49:1745:-157.332,-14.7505,0	1/1:75:0,75:0:0:75:2694:-242.478,-22.5773,0	1/1:87:0,87:0:0:87:3120:-281.022,-26.1896,0	0/1:51:31,20:31:1112:20:720:-49.7504,0,-84.9516	1/1:66:0,66:0:0:66:2372:-213.696,-19.868,0	0/1:10:1,9:1:36:9:320:-26.0441,0,-0.587975	1/1:71:0,71:0:0:71:2531:-228.031,-21.3731,0	1/1:70:0,70:0:0:70:2505:-225.554,-21.0721,0	1/1:67:0,67:0:0:67:2412:-217.327,-20.169,0	1/1:112:0,112:0:0:112:4013:-361.346,-33.7154,0	1/1:67:0,67:0:0:67:2408:-216.962,-20.169,0	0/1:130:64,66:64:2300:66:2368:-174.169,0,-168.08	1/1:146:1,145:1:36:145:5200:-464.508,-40.3521,0	0/1:40:23,17:23:824:17:612:-43.364,0,-62.4339	1/1:113:0,113:0:0:113:4047:-364.368,-34.0164,0	1/1:90:0,90:0:0:90:3221:-290.08,-27.0927,0	1/1:74:0,74:0:0:74:2645:-238.156,-22.2762,0	0/1:106:40,66:40:1425:66:2360:-180.717,0,-96.3962	0/1:76:54,22:54:1921:22:780:-47.6424,0,-150.273	1/1:28:0,28:0:0:28:993:-89.6825,-8.42884,0	1/1:228:1,227:1:36:227:8133:-728.356,-65.0366,0
chr04	24891927	.	C	T	62714.1	PASS	AB=0.546951;ABP=97.2151;AC=40;AF=0.212766;AN=188;AO=2721;CIGAR=1X;DP=11122;DPB=11122;DPRA=1.32542;EPP=62.4876;EPPR=208.745;GTI=3;LEN=1;MEANALT=1.01887;MQM=59.4855;MQMR=59.555;NS=94;NUMALT=1;ODDS=0.218897;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97119;QR=299774;RO=8398;RPL=2721;RPP=5911.59;RPPR=14828.2;RPR=0;RUN=1;SAF=1224;SAP=62.4876;SAR=1497;SRF=3340;SRP=766.186;SRR=5058;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:5,14:5:180:14:496:-39.2277,0,-10.8325	0/0:132:132,0:132:4728:0:0:0,-39.736,-424.606	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.461	0/0:273:272,1:272:9709:1:36:0,-78.5855,-869.237	0/0:101:100,1:100:3584:1:36:0,-26.8058,-319.164	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.458	0/1:195:75,120:75:2667:120:4263:-325.128,0,-181.564	0/1:154:70,84:70:2512:84:3008:-224.378,0,-179.883	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.906	0/0:137:137,0:137:4874:0:0:0,-41.2411,-438.625	0/1:165:90,75:90:3236:75:2664:-190.329,0,-241.773	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.054	0/0:72:72,0:72:2565:0:0:0,-21.6742,-230.734	0/0:193:192,1:192:6866:1:36:0,-54.5005,-614.355	0/0:136:136,0:136:4871:0:0:0,-40.9401,-438.496	0/1:143:65,78:65:2328:78:2785:-207.814,0,-166.609	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.029	0/1:80:42,38:42:1508:38:1337:-96.4631,0,-111.766	0/1:46:24,22:24:844:22:784:-57.0365,0,-62.426	0/1:174:77,97:77:2717:97:3462:-258.937,0,-192.386	0/1:219:118,101:118:4215:101:3598:-257.856,0,-313.502	0/0:69:67,2:67:2372:2:72:0,-13.9343,-206.898	0/1:83:35,48:35:1248:48:1702:-128.447,0,-87.6361	0/0:120:111,9:111:3980:9:324:0,-7.64855,-329.759	0/0:100:100,0:100:3560:0:0:0,-30.103,-320.264	0/1:320:138,182:138:4938:182:6520:-490.456,0,-347.973	0/1:306:120,186:120:4316:186:6658:-506.132,0,-296.343	0/1:73:26,47:26:932:47:1676:-129.143,0,-62.2098	0/1:237:108,129:108:3842:129:4624:-344.744,0,-274.628	0/1:108:52,56:52:1859:56:2008:-148.459,0,-134.938	0/0:135:135,0:135:4794:0:0:0,-40.639,-431.605	0/1:21:18,3:18:644:3:108:-3.75354,0,-51.969	0/1:17:11,6:11:388:6:212:-14.3073,0,-30.1173	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6908	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:452:452,0:452:16072:0:0:0,-136.066,-1445.82	0/0:89:86,2:86:3075:2:72:0,-20.0185,-270.146	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.623	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.5207	0/1:155:71,84:71:2544:84:2982:-221.909,0,-182.135	0/1:103:50,53:50:1784:53:1884:-138.828,0,-129.818	0/1:136:68,68:68:2435:68:2429:-177.919,0,-178.454	0/1:178:76,102:76:2688:102:3664:-276.337,0,-188.552	0/0:158:157,0:157:5572:0:0:0,-47.2617,-500.975	0/1:103:46,57:46:1644:57:2028:-151.75,0,-117.238	0/0:90:90,0:90:3208:0:0:0,-27.0927,-288.841	0/1:160:69,91:69:2451:91:3232:-242.871,0,-172.668	0/1:166:83,83:83:2939:83:2972:-217.693,0,-214.674	0/0:135:135,0:135:4832:0:0:0,-40.639,-434.94	0/0:134:134,0:134:4783:0:0:0,-40.338,-430.454	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2882	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.25	0/1:63:27,36:27:964:36:1273:-95.8304,0,-67.6195	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:135:49,86:49:1747:86:3079:-236.674,0,-116.72	0/1:66:26,40:26:921:40:1432:-109.263,0,-63.3349	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1296	0/1:21:15,6:15:536:6:216:-13.468,0,-42.2532	0/1:85:20,65:20:704:65:2313:-182.809,0,-38.097	0/0:223:219,4:219:7791:4:140:0,-54.1851,-688.172	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9318	0/1:120:44,76:44:1568:76:2701:-207.162,0,-105.285	0/1:203:92,111:92:3277:111:3972:-296.511,0,-234.027	0/1:95:48,47:48:1711:47:1688:-123.604,0,-125.67	0/0:78:77,1:77:2764:1:36:0,-19.8821,-245.291	0/0:148:147,1:147:5268:1:36:0,-40.9568,-470.555	0/0:138:134,4:134:4796:4:144:0,-28.2285,-417.692	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.507	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.108	0/0:171:171,0:171:6102:0:0:0,-51.4761,-549.271	0/1:17:9,8:9:320:8:277:-20.145,0,-24.0239	0/0:70:69,0:69:2424:0:0:0,-20.7711,-218.026	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.173	0/0:168:168,0:168:6020:0:0:0,-50.573,-541.779	0/0:158:158,0:158:5619:0:0:0,-47.5627,-505.819	0/1:99:50,49:50:1781:49:1737:-126.791,0,-130.699	0/0:75:74,1:74:2648:1:36:0,-18.979,-234.939	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:150:150,0:150:5367:0:0:0,-45.1545,-483.125	0/0:69:69,0:69:2471:0:0:0,-20.7711,-222.524	0/0:201:201,0:201:7160:0:0:0,-60.507,-644.402	0/0:201:201,0:201:7203:0:0:0,-60.507,-648.095	0/0:116:116,0:116:4129:0:0:0,-34.9195,-371.774	0/1:219:101,118:101:3594:118:4211:-312.04,0,-257.662	0/0:264:262,2:262:9372:2:72:0,-72.6352,-836.379	0/1:41:21,20:21:752:20:720:-52.7702,0,-55.6607	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.781	0/0:76:76,0:76:2723:0:0:0,-22.8783,-244.959	0/0:125:125,0:125:4476:0:0:0,-37.6287,-402.806	0/1:236:133,103:133:4747:103:3680:-260.075,0,-356.211	0/1:135:38,97:38:1364:97:3468:-271.675,0,-82.417	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.475	0/0:332:331,1:331:11813:1:36:0,-96.3488,-1059.29
chr04	24891936	.	TATG	CATC,TATC	143010	PASS	AB=0.473145,0.523322;ABP=20.7381,16.3798;AC=149,39;AF=0.792553,0.207447;AN=188;AO=5181,1493;CIGAR=1X2M1X,3M1X;DP=6692;DPB=6692.25;DPRA=0,1.09846;EPP=11244.7,3245.02;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.67021,2.19149;MQM=59.3721,59.647;MQMR=60;NS=94;NUMALT=2;ODDS=0.720224;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=182938,53241;QR=36;RO=1;RPL=5180,1493;RPP=11244.7,3245.02;RPPR=5.18177;RPR=1,0;RUN=1,1;SAF=0,0;SAP=11253.4,3245.02;SAR=5181,1493;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:19:0,6,13:0:0:6,13:209,456:-54.4375,-37.4425,-35.6363,-17.3439,0,-13.4305	1/1:133:0,133,0:0:0:133,0:4722,0:-424.624,-40.037,0,-424.624,-40.037,-424.624	1/1:72:0,72,0:0:0:72,0:2526,0:-227.142,-21.6742,0,-227.142,-21.6742,-227.142	1/1:171:0,170,0:0:0:170,0:5995,0:-538.348,-51.1751,0,-538.348,-51.1751,-538.348	1/1:49:0,49,0:0:0:49,0:1761,0:-158.769,-14.7505,0,-158.769,-14.7505,-158.769	1/1:45:0,45,0:0:0:45,0:1609,0:-145.067,-13.5464,0,-145.067,-13.5464,-145.067	1/2:82:0,38,44:0:0:38,44:1308,1553:-233.031,-126.813,-115.374,-106.566,0,-93.3206	1/2:155:0,68,84:0:0:68,84:2384,3008:-439.066,-245.134,-224.664,-193.964,0,-168.677	1/1:80:0,79,0:0:0:79,0:2773,0:-249.49,-23.7814,0,-249.49,-23.7814,-249.49	1/1:92:0,92,0:0:0:92,0:3231,0:-290.823,-27.6948,0,-290.823,-27.6948,-290.823	1/2:98:0,53,45:0:0:53,45:1866,1616:-283.892,-132.181,-116.227,-152.066,0,-138.52	1/1:76:0,75,0:0:0:75,0:2663,0:-239.654,-22.5773,0,-239.654,-22.5773,-239.654	1/1:73:0,73,0:0:0:73,0:2605,0:-234.338,-21.9752,0,-234.338,-21.9752,-234.338	1/1:108:0,108,0:0:0:108,0:3776,0:-339.913,-32.5112,0,-339.913,-32.5112,-339.913	1/1:60:0,60,0:0:0:60,0:2152,0:-193.931,-18.0618,0,-193.931,-18.0618,-193.931	1/2:84:0,35,49:0:0:35,49:1219,1736:-240.786,-141.76,-131.224,-99.376,0,-84.6255	1/1:86:0,86,0:0:0:86,0:3042,0:-273.98,-25.8886,0,-273.98,-25.8886,-273.98	1/2:81:0,41,38:0:0:41,38:1460,1350:-229.083,-110.091,-97.7485,-119.093,0,-107.654	1/2:47:0,24,23:0:0:24,23:855,828:-137.595,-67.9204,-60.6957,-70.0327,0,-63.109	1/2:91:0,43,48:0:0:43,48:1526,1702:-263.338,-139.012,-126.068,-124.68,0,-110.231	1/2:123:0,64,59:0:0:64,59:2265,2116:-357.299,-172.921,-153.655,-184.734,0,-166.973	1/1:31:0,31,0:0:0:31,0:1066,0:-96.2318,-9.33193,0,-96.2318,-9.33193,-96.2318	1/2:54:0,23,30:0:0:23,30:814,1059:-152.606,-86.3042,-79.3805,-66.3997,0,-57.3688	1/1:83:0,79,3:0:0:79,3:2791,108:-250.942,-23.7814,0,-242.13,-14.9691,-241.227	1/1:58:0,58,0:0:0:58,0:2024,0:-182.406,-17.4597,0,-182.406,-17.4597,-182.406	1/2:191:0,96,94:0:0:96,94:3398,3367:-551.286,-274.673,-245.774,-276.698,0,-248.402	1/2:136:0,54,82:0:0:54,82:1927,2932:-396.326,-239.426,-223.17,-157.257,0,-132.573	1/2:32:0,12,20:0:0:12,20:432,720:-94.348,-59.1036,-55.4912,-35.6042,0,-29.5836	1/2:131:0,73,58:0:0:73,58:2567,2076:-378.591,-169.642,-147.667,-209.303,0,-191.843	1/2:63:0,31,32:0:0:31,32:1093,1137:-181.717,-92.8614,-83.5294,-89.2085,0,-79.5755	1/1:68:0,68,0:0:0:68,0:2389,0:-215.265,-20.47,0,-215.265,-20.47,-215.265	1/1:6:0,6,0:0:0:6,0:215,0:-19.6992,-1.80618,0,-19.6992,-1.80618,-19.6992	1/2:6:0,4,2:0:0:4,2:144,72:-17.9616,-6.23466,-5.03054,-12.0865,0,-11.4845	1/1:9:0,9,0:0:0:9,0:307,0:-27.9598,-2.70927,0,-27.9598,-2.70927,-27.9598	1/1:9:0,9,0:0:0:9,0:322,0:-29.316,-2.70927,0,-29.316,-2.70927,-29.316	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:187:0,187,0:0:0:187,0:6599,0:-593.78,-56.2926,0,-593.78,-56.2926,-593.78	1/1:50:0,49,1:0:0:49,1:1722,36:-154.672,-14.7505,0,-151.735,-11.4532,-151.434	1/1:77:0,77,0:0:0:77,0:2706,0:-243.684,-23.1793,0,-243.684,-23.1793,-243.684	1/2:3:0,1,2:0:0:1,2:36,68:-8.79971,-5.85565,-5.55462,-3.29724,0,-2.69518	1/2:102:0,55,47:0:0:55,47:1939,1658:-292.927,-135.321,-118.764,-157.959,0,-143.81	1/2:51:0,23,28:0:0:23,28:803,1000:-147.102,-81.8819,-74.9582,-65.5723,0,-57.1434	1/2:94:0,47,46:0:0:47,46:1664,1656:-270.652,-135.121,-120.973,-135.528,0,-121.68	1/2:96:0,42,54:0:0:42,54:1470,1932:-277.446,-157.899,-145.255,-119.9,0,-103.645	1/1:58:0,58,0:0:0:58,0:2035,0:-183.026,-17.4597,0,-183.026,-17.4597,-183.026	1/2:55:0,30,25:0:0:30,25:1074,885:-160.021,-72.439,-63.4081,-87.9374,0,-80.4116	1/1:89:0,89,0:0:0:89,0:3148,0:-283.426,-26.7917,0,-283.426,-26.7917,-283.426	1/2:79:0,40,38:0:0:40,38:1399,1364:-225.056,-111.255,-99.214,-113.796,0,-102.357	1/2:75:0,41,34:0:0:41,34:1441,1220:-217.153,-99.8694,-87.5272,-117.639,0,-107.404	1/1:99:0,99,0:0:0:99,0:3499,0:-315.032,-29.802,0,-315.032,-29.802,-315.032	1/1:88:0,88,0:0:0:88,0:3118,0:-280.708,-26.4906,0,-280.708,-26.4906,-280.708	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:96:0,96,0:0:0:96,0:3411,0:-306.999,-28.8989,0,-306.999,-28.8989,-306.999	1/2:42:0,20,22:0:0:20,22:697,788:-121.029,-64.5097,-58.4891,-56.8717,0,-50.2491	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:77:0,36,41:0:0:36,41:1272,1467:-223.523,-119.953,-109.116,-103.926,0,-91.5836	1/2:29:0,12,17:0:0:12,17:430,612:-85.3649,-50.2959,-46.6836,-35.4278,0,-30.3103	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chr04	25054450	.	A	T	205744	PASS	AB=0.45136;ABP=115.602;AC=147;AF=0.781915;AN=188;AO=9604;CIGAR=1X;DP=12622;DPB=12622;DPRA=135.71;EPP=20797.1;EPPR=6444.01;GTI=2;LEN=1;MEANALT=1.02151;MQM=56.9066;MQMR=59.9927;NS=94;NUMALT=1;ODDS=0.678108;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=344009;QR=107940;RO=3014;RPL=7;RPP=20797.1;RPPR=6444.01;RPR=9597;RUN=1;SAF=0;SAP=20857.8;SAR=9604;SRF=0;SRP=6547.83;SRR=3014;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:39,30:39:1400:30:1050:-73.1341,0,-105.528	1/1:236:2,234:2:72:234:8424:-750.22,-64.2064,0	1/1:235:0,235:0:0:235:8398:-755.265,-70.7421,0	1/1:330:0,330:0:0:330:11819:-1062.07,-99.3399,0	1/1:118:1,117:1:36:117:4116:-366.58,-31.9233,0	1/1:104:0,104:0:0:104:3717:-334.494,-31.3071,0	0/1:205:135,69:135:4848:69:2472:-160.839,0,-374.702	0/1:239:130,109:130:4656:109:3908:-279.766,0,-347.256	1/1:87:0,87:0:0:87:3102:-279.238,-26.1896,0	1/1:115:0,115:0:0:115:4113:-370.111,-34.6185,0	0/1:53:34,19:34:1224:19:684:-45.8047,0,-94.5125	1/1:64:0,64:0:0:64:2296:-206.516,-19.2659,0	1/1:59:0,59:0:0:59:2120:-190.95,-17.7608,0	1/1:64:0,64:0:0:64:2287:-205.743,-19.2659,0	1/1:60:0,60:0:0:60:2141:-192.692,-18.0618,0	0/1:64:36,28:36:1287:28:1008:-71.6611,0,-96.8669	1/1:56:0,56:0:0:56:2016:-181.373,-16.8577,0	0/1:54:28,26:28:1004:26:932:-67.8993,0,-74.4202	0/1:45:27,18:27:968:18:644:-44.6851,0,-73.891	0/1:431:232,199:232:8308:199:7117:-509.958,0,-617.981	0/1:235:113,122:113:4044:122:4384:-323.486,0,-293.406	1/1:185:0,185:0:0:185:6639:-597.125,-55.6906,0	0/1:87:51,36:51:1828:36:1296:-90.6662,0,-138.611	0/1:158:96,62:96:3436:62:2223:-152.65,0,-261.891	1/1:80:0,80:0:0:80:2872:-258.23,-24.0824,0	0/1:489:258,231:258:9248:231:8308:-599.94,0,-685.083	0/1:282:147,135:147:5276:135:4856:-351.771,0,-390.066	0/1:36:20,16:20:716:16:576:-41.3046,0,-53.9306	1/1:435:0,435:0:0:435:15569:-1399.36,-130.948,0	0/1:210:110,100:110:3922:100:3566:-257.729,0,-289.954	1/1:150:0,150:0:0:150:5365:-482.357,-45.1545,0	0/1:7:5,2:5:180:2:72:-4.72626,0,-14.4449	0/1:32:19,13:19:680:13:449:-31.0229,0,-51.8962	1/1:7:0,7:0:0:7:248:-22.6592,-2.10721,0	1/1:11:0,11:0:0:11:396:-35.9039,-3.31133,0	1/1:16:1,15:1:36:15:540:-45.2569,-1.21821,0	1/1:164:0,164:0:0:164:5900:-530.564,-49.3689,0	1/1:285:1,284:1:36:284:10155:-909.352,-82.1953,0	1/1:53:0,53:0:0:53:1908:-171.918,-15.9546,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:241:131,110:131:4692:110:3936:-281.68,0,-349.892	0/1:41:22,19:22:788:19:684:-49.4315,0,-58.9026	0/1:227:118,109:118:4235:109:3920:-284.39,0,-312.994	0/1:85:58,27:58:2075:27:972:-62.0555,0,-161.432	1/1:58:0,58:0:0:58:2088:-187.8,-17.4597,0	0/1:119:64,55:64:2300:55:1965:-141.223,0,-171.438	1/1:266:0,266:0:0:266:9519:-855.806,-80.074,0	0/1:335:189,146:189:6759:146:5243:-370.627,0,-507.535	0/1:142:72,70:72:2592:70:2514:-183.181,0,-190.782	1/1:189:0,189:0:0:189:6780:-609.397,-56.8947,0	1/1:218:1,217:1:36:217:7753:-693.495,-62.0263,0	1/1:31:0,31:0:0:31:1107:-99.8545,-9.33193,0	1/1:194:0,194:0:0:194:6941:-624.472,-58.3998,0	0/1:17:12,5:12:428:5:180:-11.4278,0,-33.7413	1/1:24:0,24:0:0:24:860:-77.702,-7.22472,0	0/1:204:109,95:109:3904:95:3384:-243.189,0,-290.143	0/1:49:36,13:36:1280:13:467:-27.4895,0,-100.753	0/1:17:13,4:13:460:4:144:-8.19092,0,-36.6179	0/1:33:17,16:17:612:16:576:-42.2229,0,-45.4794	0/1:88:49,39:49:1752:39:1392:-98.8589,0,-131.473	1/1:144:0,141:0:0:141:5049:-453.049,-42.4452,0	1/1:13:0,13:0:0:13:468:-42.4353,-3.91339,0	0/1:371:177,194:177:6336:194:6962:-514.205,0,-458.642	0/1:235:117,118:117:4204:118:4234:-309.801,0,-307.797	0/1:95:50,45:50:1773:45:1620:-117.152,0,-131.253	1/1:140:0,140:0:0:140:4986:-448.464,-42.1442,0	1/1:274:0,274:0:0:274:9827:-883.032,-82.4822,0	1/1:153:0,153:0:0:153:5485:-493.048,-46.0576,0	1/1:13:0,13:0:0:13:464:-41.9433,-3.91339,0	1/1:121:0,121:0:0:121:4321:-388.267,-36.4246,0	1/1:77:0,77:0:0:77:2761:-248.531,-23.1793,0	0/1:27:15,12:15:536:12:432:-30.9885,0,-40.447	1/1:187:0,187:0:0:187:6685:-601.387,-56.2926,0	1/1:86:0,86:0:0:86:3084:-277.579,-25.8886,0	1/1:147:0,147:0:0:147:5248:-472.028,-44.2514,0	1/1:292:0,292:0:0:292:10463:-940.741,-87.9008,0	0/1:158:90,68:90:3228:68:2440:-172.167,0,-243.179	1/1:148:2,146:2:72:146:5213:-462.034,-37.7157,0	0/1:16:9,7:9:324:7:252:-18.2088,0,-24.6894	1/1:166:0,166:0:0:166:5936:-534.013,-49.971,0	1/1:168:0,168:0:0:168:6025:-541.979,-50.573,0	1/1:386:0,386:0:0:386:13815:-1241.19,-116.198,0	1/1:90:0,90:0:0:90:3232:-290.681,-27.0927,0	1/1:46:0,46:0:0:46:1656:-149.143,-13.8474,0	0/1:106:68,38:68:2436:38:1364:-91.0703,0,-187.586	1/1:110:0,110:0:0:110:3952:-355.173,-33.1133,0	1/1:37:0,37:0:0:37:1332:-119.96,-11.1381,0	1/1:77:0,77:0:0:77:2768:-249.229,-23.1793,0	1/1:74:0,74:0:0:74:2652:-238.773,-22.2762,0	1/1:22:0,22:0:0:22:792:-71.5732,-6.62266,0	0/1:103:56,47:56:1977:47:1688:-120.649,0,-147.194	0/1:74:53,21:53:1900:21:756:-46.0178,0,-149.002	1/1:168:0,168:0:0:168:6024:-540.888,-50.573,0	1/1:109:0,109:0:0:109:3912:-351.993,-32.8123,0
chr04	25054459	.	C	T	226015	PASS	AB=0.44586;ABP=142.911;AC=147;AF=0.781915;AN=188;AO=9552;CIGAR=1X;DP=12608;DPB=12608;DPRA=135.559;EPP=14742;EPPR=6582.67;GTI=3;LEN=1;MEANALT=1.02151;MQM=56.908;MQMR=59.9705;NS=94;NUMALT=1;ODDS=0.730325;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341333;QR=109212;RO=3054;RPL=8802;RPP=14742;RPPR=6582.67;RPR=750;RUN=1;SAF=0;SAP=20744.9;SAR=9552;SRF=0;SRP=6634.69;SRR=3054;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:41,28:41:1472:28:996:-68.962,0,-112.005	1/1:233:2,231:2:72:231:8220:-731.957,-63.3033,0	1/1:233:0,233:0:0:233:8303:-746.811,-70.14,0	1/1:329:0,329:0:0:329:11732:-1054.21,-99.0389,0	1/1:119:1,118:1:36:118:4173:-371.617,-32.2243,0	1/1:105:0,105:0:0:105:3756:-337.935,-31.6082,0	0/1:210:141,69:141:5030:69:2468:-159.032,0,-389.626	0/1:239:130,109:130:4633:109:3916:-280.484,0,-345.183	1/1:87:0,86:0:0:86:3077:-276.597,-25.8886,0	1/1:112:0,112:0:0:112:3982:-358.347,-33.7154,0	0/1:53:34,19:34:1224:19:684:-45.8047,0,-94.5125	1/1:65:0,65:0:0:65:2323:-208.924,-19.567,0	1/1:58:0,58:0:0:58:2050:-184.653,-17.4597,0	1/1:64:0,64:0:0:64:2273:-204.533,-19.2659,0	1/1:59:0,59:0:0:59:2116:-190.45,-17.7608,0	0/1:66:38,28:38:1356:28:1008:-71.059,0,-102.473	1/1:55:0,55:0:0:55:1953:-175.747,-16.5567,0	0/1:56:30,26:30:1076:26:913:-65.5811,0,-80.2952	0/1:44:27,17:27:972:17:608:-41.75,0,-74.5526	0/1:428:230,197:230:8219:197:7026:-502.529,0,-610.819	0/1:234:115,119:115:4113:119:4238:-310.715,0,-299.912	1/1:184:0,184:0:0:184:6577:-591.588,-55.3895,0	0/1:89:53,36:53:1900:36:1292:-89.7054,0,-144.486	0/1:160:100,60:100:3580:60:2141:-144.627,0,-274.242	1/1:79:0,79:0:0:79:2818:-253.566,-23.7814,0	0/1:489:259,230:259:9285:230:8206:-590.793,0,-688.41	0/1:278:144,134:144:5138:134:4808:-348.7,0,-378.873	0/1:37:21,16:21:756:16:572:-40.6426,0,-57.2291	1/1:434:0,434:0:0:434:15523:-1395.2,-130.647,0	0/1:213:113,100:113:4040:100:3577:-257.712,0,-299.669	1/1:152:0,152:0:0:152:5394:-485.112,-45.7566,0	0/1:7:5,2:5:180:2:72:-4.72626,0,-14.4449	0/1:32:19,13:19:680:13:468:-32.7426,0,-51.8962	1/1:7:0,7:0:0:7:237:-21.6535,-2.10721,0	1/1:11:0,11:0:0:11:396:-35.9039,-3.31133,0	1/1:15:1,14:1:36:14:500:-41.6579,-0.917175,0	1/1:159:0,159:0:0:159:5696:-512.253,-47.8638,0	1/1:285:1,284:1:36:284:10178:-911.279,-82.1953,0	1/1:53:0,53:0:0:53:1896:-170.841,-15.9546,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:242:133,109:133:4757:109:3885:-276.793,0,-354.171	0/1:41:22,19:22:792:19:684:-49.4315,0,-59.2634	0/1:234:127,107:127:4526:107:3820:-273.344,0,-337.065	0/1:88:61,27:61:2177:27:968:-60.7928,0,-169.704	1/1:58:0,58:0:0:58:2064:-185.698,-17.4597,0	0/1:122:68,54:68:2436:54:1906:-135.018,0,-182.77	1/1:267:0,267:0:0:267:9538:-857.432,-80.375,0	0/1:335:190,145:190:6754:145:5166:-363.675,0,-507.088	0/1:142:71,71:71:2556:71:2532:-184.798,0,-187.543	1/1:189:0,189:0:0:189:6768:-608.368,-56.8947,0	1/1:219:1,218:1:36:218:7805:-698.208,-62.3273,0	1/1:31:0,31:0:0:31:1112:-100.248,-9.33193,0	1/1:194:0,194:0:0:194:6940:-624.387,-58.3998,0	0/1:18:13,5:13:468:5:180:-11.1268,0,-37.0411	1/1:23:0,23:0:0:23:820:-74.1041,-6.92369,0	0/1:206:112,94:112:3997:94:3361:-240.539,0,-297.907	0/1:47:35,12:35:1260:12:432:-24.9223,0,-99.5571	0/1:17:13,4:13:468:4:144:-8.19092,0,-37.3421	0/1:33:17,16:17:612:16:576:-42.2229,0,-45.4794	0/1:89:50,39:50:1773:39:1377:-97.2074,0,-133.059	1/1:143:0,143:0:0:143:5120:-460.333,-43.0473,0	1/1:13:0,13:0:0:13:464:-42.0732,-3.91339,0	0/1:369:175,194:175:6273:194:6944:-511.879,0,-453.576	0/1:235:117,118:117:4189:118:4212:-307.438,0,-306.448	0/1:90:48,42:48:1709:42:1508:-108.587,0,-127.001	1/1:140:0,140:0:0:140:5012:-450.762,-42.1442,0	1/1:270:0,270:0:0:270:9676:-869.083,-81.2781,0	1/1:152:0,152:0:0:152:5456:-490.438,-45.7566,0	1/1:12:0,12:0:0:12:428:-38.7045,-3.61236,0	1/1:121:0,121:0:0:121:4312:-387.502,-36.4246,0	1/1:77:0,77:0:0:77:2764:-248.787,-23.1793,0	0/1:26:14,12:14:500:12:432:-31.2895,0,-37.5094	1/1:186:1,185:1:36:185:6626:-592.48,-52.3933,0	1/1:86:0,86:0:0:86:3073:-276.588,-25.8886,0	1/1:147:0,147:0:0:147:5268:-473.305,-44.2514,0	1/1:290:0,290:0:0:290:10389:-933.968,-87.2987,0	0/1:157:90,67:90:3217:67:2382:-167.249,0,-242.489	1/1:146:2,144:2:72:144:5134:-454.838,-37.1137,0	0/1:16:9,7:9:324:7:252:-18.2088,0,-24.6894	1/1:167:0,167:0:0:167:5980:-537.958,-50.272,0	1/1:166:0,166:0:0:166:5948:-535.053,-49.971,0	1/1:388:0,388:0:0:388:13862:-1245.51,-116.8,0	1/1:87:0,87:0:0:87:3091:-278.092,-26.1896,0	1/1:46:0,46:0:0:46:1652:-148.784,-13.8474,0	0/1:107:69,38:69:2465:38:1368:-91.1294,0,-189.892	1/1:109:0,109:0:0:109:3908:-351.221,-32.8123,0	1/1:37:0,37:0:0:37:1313:-118.249,-11.1381,0	1/1:77:0,77:0:0:77:2756:-248.152,-23.1793,0	1/1:73:0,73:0:0:73:2620:-235.899,-21.9752,0	1/1:22:0,22:0:0:22:780:-70.4924,-6.62266,0	0/1:103:57,46:57:2037:46:1656:-117.771,0,-152.594	0/1:74:53,21:53:1908:21:748:-45.2987,0,-149.721	1/1:170:0,170:0:0:170:6083:-546.718,-51.1751,0	1/1:108:0,108:0:0:108:3872:-348.4,-32.5112,0
chr04	25117888	.	A	G	89678.4	PASS	AB=0.529723;ABP=20.4366;AC=148;AF=0.787234;AN=188;AO=4197;CIGAR=1X;DP=5272;DPB=5272;DPRA=0;EPP=9116.68;EPPR=2335.17;GTI=0;LEN=1;MEANALT=1.01064;MQM=58.3302;MQMR=59.905;NS=94;NUMALT=1;ODDS=0.29182;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150175;QR=38432;RO=1074;RPL=4197;RPP=9116.68;RPPR=2335.17;RPR=0;RUN=1;SAF=0;SAP=9116.68;SAR=4197;SRF=0;SRP=2335.17;SRR=1074;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:16,18:16:568:18:648:-48.345,0,-41.2168	1/1:51:0,51:0:0:51:1828:-164.751,-15.3525,0	1/1:131:0,131:0:0:131:4678:-420.974,-39.4349,0	1/1:111:0,111:0:0:111:3976:-356.5,-33.4143,0	1/1:18:1,17:1:36:17:612:-51.7476,-1.82027,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:23:10,13:10:356:13:468:-35.4785,0,-25.4576	0/1:67:34,33:34:1224:33:1188:-87.0562,0,-90.298	1/1:73:0,73:0:0:73:2624:-236.33,-21.9752,0	1/1:43:1,42:1:36:42:1504:-131.926,-9.34602,0	1/1:24:0,24:0:0:24:864:-78.0264,-7.22472,0	1/1:61:0,61:0:0:61:2179:-196.106,-18.3628,0	1/1:40:0,40:0:0:40:1421:-128.058,-12.0412,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:33:0,33:0:0:33:1188:-107.047,-9.93399,0	0/1:23:7,16:7:252:16:572:-44.6612,0,-16.1053	1/1:15:0,15:0:0:15:522:-47.2962,-4.51545,0	0/1:23:13,10:13:468:10:360:-25.8172,0,-35.536	0/1:22:7,15:7:252:15:540:-42.3139,0,-16.4063	0/1:136:76,60:76:2736:60:2156:-152.732,0,-205.524	0/1:122:57,65:57:2036:65:2332:-173.369,0,-146.787	1/1:103:0,103:0:0:103:3684:-331.333,-31.0061,0	0/1:94:58,36:58:2054:36:1296:-88.6139,0,-156.829	0/1:79:14,65:14:504:65:2311:-184.435,0,-21.9167	1/1:44:0,44:0:0:44:1571:-141.139,-13.2453,0	0/1:170:86,84:86:3084:84:3020:-218.149,0,-226.606	0/1:141:69,72:69:2445:72:2563:-188.023,0,-177.859	0/1:14:5,9:5:180:9:324:-25.2868,0,-12.3376	0/1:141:60,81:60:2148:81:2893:-217.9,0,-151.138	0/1:69:40,29:40:1440:29:1036:-72.7021,0,-109.127	1/1:79:0,79:0:0:79:2828:-254.18,-23.7814,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:1:0,1:0:0:1:36:-3.55862,-0.30103,0	1/1:11:0,11:0:0:11:392:-35.5626,-3.31133,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:91:0,90:0:0:90:3215:-288.54,-27.0927,0	1/1:75:0,75:0:0:75:2692:-242.479,-22.5773,0	1/1:26:0,26:0:0:26:928:-83.8181,-7.82678,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:86:46,40:46:1656:40:1428:-102.883,0,-123.44	0/1:23:10,13:10:360:13:464:-35.1287,0,-25.8206	0/1:67:20,47:20:716:47:1653:-128.823,0,-44.5987	0/1:28:13,15:13:468:15:540:-40.5005,0,-34.0296	1/1:29:0,29:0:0:29:1035:-93.2099,-8.72987,0	0/1:65:31,34:31:1112:34:1220:-90.3432,0,-80.7785	1/1:58:0,58:0:0:58:2076:-187.039,-17.4597,0	0/1:105:46,59:46:1640:59:2112:-158.629,0,-116.27	0/1:70:36,34:36:1296:34:1205:-87.6667,0,-95.8714	1/1:80:0,80:0:0:80:2864:-257.854,-24.0824,0	1/1:148:0,148:0:0:148:5292:-475.961,-44.5524,0	1/1:7:0,7:0:0:7:252:-23.025,-2.10721,0	1/1:81:0,81:0:0:81:2908:-261.376,-24.3834,0	0/1:24:11,13:11:396:13:468:-35.0678,0,-28.7571	1/1:8:0,8:0:0:8:288:-26.267,-2.40824,0	0/1:78:35,43:35:1256:43:1536:-115.008,0,-89.8649	0/1:40:17,23:17:612:23:828:-62.7811,0,-43.0533	0/1:3:1,2:1:36:2:72:-5.93172,0,-2.69518	0/1:9:3,6:3:108:6:216:-17.0766,0,-7.3659	0/1:39:22,17:22:792:17:612:-43.6733,0,-59.8655	1/1:53:0,53:0:0:53:1900:-170.673,-15.9546,0	1/1:1:0,1:0:0:1:36:-3.59783,-0.30103,0	0/1:107:59,48:59:2101:48:1697:-120.703,0,-157.146	0/1:111:51,60:51:1832:60:2152:-160.421,0,-131.746	0/1:30:17,13:17:612:13:460:-32.6547,0,-46.3825	1/1:48:0,48:0:0:48:1716:-154.529,-14.4494,0	1/1:127:0,127:0:0:127:4539:-407.817,-38.2308,0	1/1:138:1,137:1:36:137:4908:-437.866,-37.9439,0	1/1:20:0,20:0:0:20:720:-65.0929,-6.0206,0	1/1:55:0,55:0:0:55:1972:-177.673,-16.5567,0	1/1:34:0,34:0:0:34:1211:-109.089,-10.235,0	0/1:16:9,7:9:324:7:252:-18.21,0,-24.6894	1/1:66:0,66:0:0:66:2376:-212.899,-19.868,0	1/1:73:0,73:0:0:73:2607:-234.527,-21.9752,0	1/1:75:0,75:0:0:75:2672:-240.102,-22.5773,0	1/1:121:0,121:0:0:121:4299:-386.623,-36.4246,0	0/1:34:13,21:13:468:21:752:-57.5284,0,-32.2246	1/1:50:1,49:1:36:49:1764:-155.333,-11.4532,0	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	1/1:89:0,89:0:0:89:3185:-286.771,-26.7917,0	1/1:104:0,104:0:0:104:3732:-335.792,-31.3071,0	1/1:132:0,132:0:0:132:4732:-425.632,-39.736,0	1/1:37:0,37:0:0:37:1328:-119.45,-11.1381,0	1/1:22:0,22:0:0:22:792:-71.3966,-6.62266,0	0/1:23:12,11:12:428:11:388:-28.2767,0,-31.9347	1/1:89:1,88:1:36:88:3149:-279.745,-23.1934,0	0/1:18:6,12:6:212:12:432:-33.7129,0,-14.0063	0/1:45:18,27:18:644:27:959:-73.0786,0,-44.7442	1/1:54:0,54:0:0:54:1935:-174.417,-16.2556,0	1/1:17:0,17:0:0:17:608:-54.961,-5.11751,0	0/1:46:12,34:12:413:34:1211:-94.2536,0,-23.6504	0/1:34:22,12:22:775:12:428:-28.6057,0,-59.8362	1/1:73:0,73:0:0:73:2628:-236.213,-21.9752,0	1/1:40:1,39:1:36:39:1389:-121.46,-8.44293,0
chr04	25120590	.	G	A	102342	PASS	AB=0.491144;ABP=4.85645;AC=145;AF=0.771277;AN=188;AO=4779;CIGAR=1X;DP=6173;DPB=6173;DPRA=11.052;EPP=10328.4;EPPR=3006.18;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9349;MQMR=59.9763;NS=94;NUMALT=1;ODDS=0.559974;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170758;QR=49306;RO=1391;RPL=8;RPP=10311.1;RPPR=3006.18;RPR=4771;RUN=1;SAF=4;SAP=10345.8;SAR=4775;SRF=0;SRP=3023.53;SRR=1391;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:95:1,93:1:36:93:3328:-296.14,-25.0584,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:71:0,71:0:0:71:2542:-229.028,-21.3731,0	1/1:17:0,17:0:0:17:612:-55.4088,-5.11751,0	1/1:34:0,34:0:0:34:1211:-109.277,-10.235,0	0/1:86:55,31:55:1964:31:1112:-74.5028,0,-151.147	0/1:79:35,44:35:1239:44:1576:-118.35,0,-88.0323	1/1:54:0,54:0:0:54:1925:-173.526,-16.2556,0	1/1:92:0,92:0:0:92:3283:-295.689,-27.6948,0	1/1:52:0,52:0:0:52:1831:-165.067,-15.6536,0	1/1:38:0,38:0:0:38:1338:-120.717,-11.4391,0	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	1/1:98:0,97:0:0:97:3441:-309.536,-29.1999,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:49:26,23:26:896:23:828:-59.9649,0,-66.2002	1/1:60:0,60:0:0:60:2147:-193.497,-18.0618,0	0/1:48:21,27:21:756:27:964:-72.6274,0,-53.9178	0/1:31:19,12:19:653:12:432:-29.8893,0,-49.7571	0/1:84:43,41:43:1527:41:1472:-107.488,0,-112.435	0/1:92:53,39:53:1899:39:1400:-98.5998,0,-143.492	1/1:57:0,57:0:0:57:2040:-183.869,-17.1587,0	0/1:24:10,14:10:352:14:504:-38.4734,0,-24.7935	0/1:63:11,52:11:396:52:1864:-149.066,0,-17.0179	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:200:102,98:102:3630:98:3509:-255.812,0,-266.7	0/1:120:70,50:70:2516:50:1787:-124.988,0,-190.568	0/1:28:13,15:13:445:15:540:-40.5077,0,-31.9004	0/1:143:86,56:86:3072:56:2016:-138.606,0,-233.603	0/1:65:36,29:36:1275:29:1017:-72.2729,0,-95.4853	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:158:0,158:0:0:158:5630:-506.724,-47.5627,0	1/1:146:1,145:1:36:145:5174:-462.203,-40.3521,0	1/1:56:0,56:0:0:56:1978:-178.293,-16.8577,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:58:38,20:38:1355:20:705:-46.313,0,-104.79	0/1:40:14,26:14:500:26:936:-72.5183,0,-33.295	0/1:81:42,39:42:1470:39:1388:-100.835,0,-108.21	0/1:42:17,25:17:586:25:900:-68.6778,0,-40.4195	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	0/1:63:28,35:28:1008:35:1251:-93.9294,0,-72.0715	1/1:61:0,61:0:0:61:2192:-197.537,-18.3628,0	0/1:117:51,66:51:1802:66:2337:-175.368,0,-127.24	0/1:79:35,44:35:1240:44:1576:-118.35,0,-88.1231	1/1:129:0,129:0:0:129:4612:-415.235,-38.8329,0	1/1:132:0,132:0:0:132:4698:-422.979,-39.736,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:95:2,93:2:72:93:3312:-291.452,-21.7611,0	0/1:49:29,20:29:1036:20:716:-50.0172,0,-78.8034	1/1:27:0,27:0:0:27:949:-85.7228,-8.12781,0	0/1:83:47,36:47:1667:36:1296:-91.9584,0,-125.331	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:20:7,13:7:252:13:459:-35.6235,0,-17.0084	0/1:43:28,15:28:999:15:527:-34.8159,0,-77.2802	0/1:63:33,30:33:1166:30:1063:-77.0159,0,-86.2801	1/1:119:0,119:0:0:119:4254:-383.037,-35.8226,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:237:114,123:114:4015:123:4390:-323.91,0,-290.198	0/1:162:90,72:90:3211:72:2582:-183.776,0,-240.446	0/1:60:24,36:24:856:36:1292:-98.522,0,-59.2993	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:76:0,76:0:0:76:2717:-244.772,-22.8783,0	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:98:0,98:0:0:98:3475:-312.959,-29.5009,0	0/1:19:12,7:12:432:7:248:-16.9446,0,-33.5016	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:56:2,54:2:72:54:1915:-165.788,-10.021,0	1/1:73:0,73:0:0:73:2606:-234.787,-21.9752,0	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	0/1:34:16,18:16:559:18:636:-47.2866,0,-40.4026	1/1:86:0,86:0:0:86:3084:-277.784,-25.8886,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:59:0,59:0:0:59:2111:-190.258,-17.7608,0	1/1:152:0,152:0:0:152:5435:-489.279,-45.7566,0	1/1:94:1,93:1:36:93:3328:-296.14,-24.6985,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	0/1:67:26,41:26:897:41:1449:-110.533,0,-60.87	1/1:119:0,119:0:0:119:4275:-384.79,-35.8226,0	0/1:33:15,18:15:501:18:644:-48.3566,0,-35.4709	0/1:41:19,22:19:667:22:792:-59.2634,0,-48.0124	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:38:0,38:0:0:38:1336:-120.465,-11.4391,0	0/1:106:53,53:53:1870:53:1900:-139.369,0,-136.666	0/1:45:32,13:32:1129:13:468:-28.9133,0,-88.37	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0
chr04	25489060	.	A	T	71653.9	PASS	AB=0.497178;ABP=3.45154;AC=41;AF=0.218085;AN=188;AO=3235;CIGAR=1X;DP=15477;DPB=15477;DPRA=1.2049;EPP=7027.72;EPPR=26586.2;GTI=2;LEN=1;MEANALT=1;MQM=59.493;MQMR=59.7494;NS=94;NUMALT=1;ODDS=0.760371;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115851;QR=437285;RO=12242;RPL=2088;RPP=597.384;RPPR=2502.73;RPR=1147;RUN=1;SAF=1147;SAP=597.384;SAR=2088;SRF=4244;SRP=2502.73;SRR=7998;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:17,30:17:604:30:1080:-83.2574,0,-40.5422	0/0:229:228,1:228:8118:1:32:0,-65.7366,-726.435	0/0:201:201,0:201:7136:0:0:0,-60.507,-641.457	0/0:309:309,0:309:11056:0:0:0,-93.0183,-994.915	0/0:107:103,4:103:3696:4:144:0,-18.8966,-319.506	0/0:115:115,0:115:4093:0:0:0,-34.6184,-368.444	0/1:149:78,71:78:2768:71:2540:-183.97,0,-204.47	0/1:298:169,129:169:6052:129:4636:-327.421,0,-454.963	0/0:222:220,2:220:7844:2:68:0,-60.3709,-699.178	0/0:184:184,0:184:6576:0:0:0,-55.3895,-591.903	0/1:139:70,69:70:2508:69:2480:-181.61,0,-184.127	0/0:189:187,2:187:6691:2:72:0,-50.0579,-595.405	0/0:115:112,3:112:4008:3:104:0,-24.9156,-350.919	0/0:144:143,1:143:5116:1:36:0,-39.75,-456.846	0/0:128:128,0:128:4576:0:0:0,-38.5318,-411.999	0/1:120:60,60:60:2160:60:2147:-157.328,0,-158.515	0/0:104:103,1:103:3628:1:36:0,-27.7088,-323.1	0/1:119:58,61:58:2080:61:2192:-161.723,0,-151.615	0/1:82:41,41:41:1460:41:1468:-107.624,0,-107.012	0/1:374:137,237:137:4896:237:8484:-650.86,0,-328.148	0/1:330:160,170:160:5720:170:6100:-449.425,0,-415.527	0/0:146:142,4:142:5076:4:129:0,-32.0227,-445.056	0/1:132:53,79:53:1892:79:2836:-215.148,0,-130.779	0/1:167:83,84:83:2968:84:3012:-220.928,0,-216.734	0/0:108:108,0:108:3856:0:0:0,-32.5112,-347.073	0/1:409:242,167:242:8614:167:5980:-414.567,0,-652.071	0/1:371:184,187:184:6580:187:6699:-490.989,0,-480.591	0/1:68:27,41:27:957:41:1476:-112.621,0,-65.9737	0/0:379:379,0:379:13506:0:0:0,-114.09,-1215.25	0/1:249:114,135:114:4064:135:4844:-361.009,0,-290.981	0/1:211:102,109:102:3640:109:3904:-287.995,0,-264.233	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:23:20,3:20:708:3:104:-2.75593,0,-57.1173	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2592	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6118	0/0:410:405,5:405:14490:5:180:0,-106.87,-1287.15	0/0:242:242,0:242:8497:0:0:0,-72.8493,-764.559	0/0:110:109,1:109:3904:1:36:0,-29.515,-347.921	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:228:134,94:134:4776:94:3368:-233.959,0,-361.297	0/1:90:42,48:42:1500:48:1720:-127.97,0,-108.197	0/1:209:116,93:116:4148:93:3332:-237.026,0,-310.567	0/1:133:65,68:65:2301:68:2429:-178.529,0,-166.44	0/0:125:122,3:122:4342:3:108:0,-27.5536,-380.876	0/0:123:123,0:123:4392:0:0:0,-37.0267,-394.349	0/0:218:218,0:218:7800:0:0:0,-65.6245,-701.758	0/1:271:151,120:151:5404:120:4284:-304.135,0,-404.517	0/1:188:92,96:92:3300:96:3440:-252.959,0,-240.612	0/0:318:317,1:317:11253:1:36:0,-92.1293,-1009.04	0/0:168:168,0:168:5990:0:0:0,-50.573,-538.22	0/0:19:18,1:18:644:1:36:0,-2.12129,-54.6923	0/0:215:215,0:215:7724:0:0:0,-64.7214,-695.14	0/1:97:57,40:57:2040:40:1395:-96.635,0,-154.671	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:222:119,103:119:4272:103:3704:-266.556,0,-317.828	0/1:73:48,25:48:1708:25:888:-58.2638,0,-132.028	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/1:35:18,17:18:648:17:612:-44.6916,0,-48.1158	0/1:127:60,67:60:2156:67:2408:-178.633,0,-156.072	0/0:214:212,2:212:7573:2:72:0,-57.5837,-674.629	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:244:149,95:149:5317:95:3378:-230.73,0,-405.209	0/1:335:152,183:152:5440:183:6564:-489.813,0,-388.876	0/1:142:83,59:83:2968:59:2086:-144.681,0,-224.034	0/0:156:156,0:156:5536:0:0:0,-46.9607,-498.34	0/0:243:241,2:241:8620:2:72:0,-66.3136,-767.834	0/0:168:168,0:168:6028:0:0:0,-50.573,-542.611	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.672	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.357	0/0:129:127,2:127:4552:2:72:0,-31.9961,-403.005	0/1:27:15,12:15:536:12:432:-31.0934,0,-39.4998	0/0:115:115,0:115:4100:0:0:0,-34.6184,-369.151	0/0:124:123,1:123:4397:1:36:0,-33.7294,-392.303	0/0:237:237,0:237:8476:0:0:0,-71.3441,-762.682	0/0:329:326,3:326:11688:3:108:0,-88.9637,-1041.69	0/1:145:74,71:74:2648:71:2540:-184.944,0,-194.811	0/0:233:231,2:231:8253:2:72:0,-63.3033,-735.724	0/1:25:9,16:9:320:16:576:-44.6492,0,-21.6166	0/0:252:251,1:251:8985:1:36:0,-72.2613,-804.99	0/0:178:178,0:178:6344:0:0:0,-53.5833,-571.024	0/0:418:416,2:416:14881:2:72:0,-118.994,-1331.37	0/0:179:177,2:177:6356:2:72:0,-47.0476,-565.277	0/0:122:119,3:119:4264:3:108:0,-26.6505,-373.833	0/1:134:75,59:75:2696:59:2116:-150.337,0,-202.543	0/0:285:280,5:280:10017:5:180:0,-69.2415,-884.863	0/0:63:60,3:60:2152:3:108:0,-8.88972,-183.666	0/0:165:164,1:164:5856:1:36:0,-46.0717,-523.478	0/0:140:140,0:140:5004:0:0:0,-42.1442,-450.484	0/0:95:95,0:95:3420:0:0:0,-28.5978,-308.012	0/1:178:68,110:68:2436:110:3940:-301.207,0,-165.912	0/1:164:53,111:53:1866:111:3988:-309.709,0,-118.84	0/0:164:164,0:164:5860:0:0:0,-49.3689,-527.504	0/0:223:220,3:220:7888:3:108:0,-57.0545,-699.862
chr04	25489094	.	GGGGA	TGGGA,CGGGT	121965	PASS	AB=0.46846,0.522263;ABP=21.639,12.2924;AC=148,38;AF=0.795699,0.204301;AN=186;AO=4338,1131;CIGAR=1X4M,1X3M1X;DP=5517;DPB=5519;DPRA=0,1.00228;EPP=8976.61,2338.85;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=1.92473,2.44186;MQM=59.9949,59.9894;MQMR=60;NS=93;NUMALT=2;ODDS=4.88078;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=108,0;PQR=104;PRO=3;QA=155313,39510;QR=34;RO=1;RPL=4286,1117;RPP=8976.61,2338.85;RPPR=5.18177;RPR=52,14;RUN=1,1;SAF=4338,1131;SAP=9422.86,2458.95;SAR=0,0;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:16:0,8,8:0:0:8,8:288,286:-47.1779,-23.6773,-21.2691,-23.8592,0,-21.4509	1/1:32:0,30,1:0:0:30,1:1068,32:-96.1614,-9.0309,0,-93.584,-6.39758,-93.283	1/1:85:0,85,0:0:0:85,0:3033,0:-273.199,-25.5876,0,-273.199,-25.5876,-273.199	1/1:83:0,83,0:0:0:83,0:2964,0:-266.994,-24.9855,0,-266.994,-24.9855,-266.994	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:35:0,34,0:0:0:34,0:1203,0:-108.264,-10.235,0,-108.264,-10.235,-108.264	1/2:50:0,34,16:0:0:34,16:1216,573:-146.241,-47.0875,-36.8525,-99.5115,0,-94.6951	1/2:64:0,25,39:0:0:25,39:896,1372:-185.116,-112.037,-104.511,-73.4346,0,-61.6944	1/1:53:0,52,0:0:0:52,0:1846,0:-166.059,-15.6536,0,-166.059,-15.6536,-166.059	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/2:82:0,30,51:0:0:30,51:1080,1782:-233.073,-144.947,-135.916,-88.1225,0,-72.77	1/1:99:0,99,0:0:0:99,0:3556,0:-320.247,-29.802,0,-320.247,-29.802,-320.247	1/1:69:0,69,0:0:0:69,0:2471,0:-222.573,-20.7711,0,-222.573,-20.7711,-222.573	1/1:57:0,57,0:0:0:57,0:2052,0:-184.951,-17.1587,0,-184.951,-17.1587,-184.951	1/1:53:0,53,0:0:0:53,0:1908,0:-171.998,-15.9546,0,-171.998,-15.9546,-171.998	1/2:51:0,22,28:0:0:22,28:783,988:-144.261,-80.4452,-73.8225,-63.8106,0,-55.3818	1/1:26:0,26,0:0:0:26,0:921,0:-83.2052,-7.82678,0,-83.2052,-7.82678,-83.2052	1/2:42:0,13,29:0:0:13,29:468,1034:-122.831,-84.6439,-80.7305,-38.5463,0,-29.8164	1/2:37:0,16,20:0:0:16,20:576,695:-103.494,-56.4903,-51.6738,-46.9987,0,-40.9781	1/2:76:0,45,30:0:0:45,30:1616,1068:-218.868,-87.0416,-73.4952,-131.824,0,-122.793	1/2:96:0,43,51:0:0:43,51:1517,1776:-267.958,-144.431,-131.487,-123.541,0,-108.189	1/1:68:0,67,0:0:0:67,0:2389,0:-214.906,-20.169,0,-214.906,-20.169,-214.906	1/2:58:0,18,40:0:0:18,40:635,1394:-165.42,-113.713,-108.294,-52.0584,0,-40.0172	1/2:17:0,5,12:0:0:5,12:180,423:-49.4828,-34.7935,-33.2884,-15.0469,0,-11.4346	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:112:0,53,57:0:0:53,57:1895,1974:-314.937,-160.416,-144.462,-154.518,0,-137.359	1/2:118:0,71,44:0:0:71,44:2548,1524:-331.718,-123.871,-102.498,-207.866,0,-194.621	1/2:38:0,12,26:0:0:12,26:432,923:-110.811,-75.5607,-71.9484,-35.6088,0,-27.7821	1/1:142:0,141,1:0:0:141,1:5056,36:-454.824,-42.4452,0,-451.887,-39.148,-451.586	1/2:94:0,31,63:0:0:31,63:1108,2208:-270.365,-180.021,-170.689,-90.6991,0,-71.7342	1/2:76:0,35,41:0:0:35,41:1251,1431:-218.747,-116.742,-106.206,-102.358,0,-90.016	1/2:5:0,2,3:0:0:2,3:72,107:-14.9552,-9.07908,-8.47702,-6.23466,0,-5.33157	1/1:14:0,13,1:0:0:13,1:468,35:-42.1091,-3.91339,0,-39.262,-0.715791,-38.961	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:198:0,192,0:0:0:192,0:6884,0:-619.293,-57.7978,0,-619.293,-57.7978,-619.293	1/1:104:0,103,0:0:0:103,0:3704,0:-333.25,-31.0061,0,-333.25,-31.0061,-333.25	1/1:55:0,55,0:0:0:55,0:1967,0:-177.304,-16.5567,0,-177.304,-16.5567,-177.304	.:.:.:.:.:.:.:.	1/2:76:0,46,30:0:0:46,30:1644,999:-215.237,-81.178,-67.3306,-134.401,0,-125.37	1/2:53:0,20,32:0:0:20,32:720,1141:-151.757,-93.0072,-86.9866,-58.7483,0,-49.1154	1/2:62:0,36,26:0:0:36,26:1296,894:-178.7,-72.9435,-62.1064,-106.107,0,-98.2801	1/2:44:0,24,19:0:0:24,19:847,671:-123.608,-54.6375,-47.4128,-68.9645,0,-63.2449	1/1:66:0,66,0:0:0:66,0:2331,0:-210.048,-19.868,0,-210.048,-19.868,-210.048	1/1:54:0,54,0:0:0:54,0:1944,0:-175.236,-16.2556,0,-175.236,-16.2556,-175.236	1/1:70:0,68,0:0:0:68,0:2448,0:-220.258,-20.47,0,-220.258,-20.47,-220.258	1/2:74:0,36,35:0:0:36,35:1296,1237:-206.488,-100.738,-89.9009,-105.747,0,-95.211	1/2:60:0,37,23:0:0:37,23:1323,812:-174.006,-66.1272,-54.9891,-107.883,0,-100.959	1/1:136:0,136,0:0:0:136,0:4888,0:-439.71,-40.9401,0,-439.71,-40.9401,-439.71	1/1:56:0,55,0:0:0:55,0:1976,0:-177.892,-16.5567,0,-177.892,-16.5567,-177.892	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:67:0,64,0:0:0:64,0:2292,0:-206.185,-19.2659,0,-206.185,-19.2659,-206.185	1/2:48:0,22,26:0:0:22,26:788,897:-137.484,-73.2135,-66.5909,-64.6221,0,-56.7954	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:69:0,33,35:0:0:33,35:1188,1257:-199.583,-102.647,-92.7125,-97.0414,0,-86.5053	1/2:30:0,17,13:0:0:17,13:604,441:-85.3263,-36.0998,-30.9823,-49.5725,0,-45.6591	1/2:5:0,3,2:0:0:3,2:108,71:-14.9552,-6.14,-5.23691,-9.17208,0,-8.57002	1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chr04	25499081	.	C	T	75675.3	PASS	AB=0.663467;ABP=1260.29;AC=40;AF=0.212766;AN=188;AO=3614;CIGAR=1X;DP=10892;DPB=10892;DPRA=1.65835;EPP=7850.71;EPPR=15802.6;GTI=8;LEN=1;MEANALT=1.01852;MQM=36.1644;MQMR=42.7262;NS=94;NUMALT=1;ODDS=1.18242;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128603;QR=258335;RO=7276;RPL=1807;RPP=3.0103;RPPR=15776.6;RPR=1807;RUN=1;SAF=1807;SAP=3.0103;SAR=1807;SRF=3;SRP=15776.6;SRR=7273;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:111:45,66:45:1604:66:2351:-156.469,0,-104.668	0/0:130:127,3:127:4528:3:108:0,-30.4668,-382.305	0/0:345:345,0:345:12248:0:0:0,-103.855,-1059.33	0/0:163:162,1:162:5776:1:32:0,-45.9317,-511.76	0/0:99:96,3:96:3423:3:108:0,-20.876,-286.198	0/0:65:65,0:65:2323:0:0:0,-19.5669,-202.469	0/1:131:29,102:29:1027:102:3607:-254.424,0,-52.4725	0/1:269:115,154:115:4100:154:5488:-365.824,0,-274.848	0/0:99:96,3:96:3362:3:108:0,-20.0355,-280.808	0/0:79:79,0:79:2818:0:0:0,-23.7814,-251.829	0/1:71:21,50:21:729:50:1771:-125.593,0,-43.0017	0/0:69:69,0:69:2451:0:0:0,-20.7711,-212.115	0/0:63:63,0:63:2252:0:0:0,-18.9649,-193.257	0/0:52:52,0:52:1820:0:0:0,-15.6536,-157.103	0/0:58:58,0:58:2045:0:0:0,-17.4597,-182.695	0/1:95:33,62:33:1153:62:2207:-148.014,0,-71.258	0/0:69:69,0:69:2459:0:0:0,-20.7711,-210.202	0/1:88:30,58:30:1048:58:2071:-139.842,0,-63.8366	0/1:60:19,41:19:665:41:1460:-101.433,0,-39.202	0/1:322:107,215:107:3779:215:7647:-533.473,0,-239.726	0/1:229:70,159:70:2497:159:5652:-395.007,0,-147.174	0/0:75:74,1:74:2656:1:36:0,-19.2311,-222.607	0/1:61:24,37:24:843:37:1328:-88.0632,0,-56.8044	0/1:215:77,138:77:2738:138:4910:-332.808,0,-172.034	0/0:149:148,1:148:5252:1:36:0,-41.8727,-447.559	0/1:278:78,200:78:2792:200:7172:-525.026,0,-155.458	0/1:558:206,352:206:7367:352:12576:-866.135,0,-459.71	0/1:61:15,46:15:536:46:1631:-111.703,0,-27.8041	0/0:366:365,1:365:13038:1:36:0,-106.878,-1110.05	0/1:139:44,95:44:1549:95:3355:-226.578,0,-92.1382	0/1:134:43,91:43:1523:91:3219:-224.084,0,-95.3006	0/1:13:6,7:6:199:7:252:-17.8536,0,-13.2439	0/1:14:3,11:3:108:11:384:-25.9778,0,-5.48261	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.7056	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.2764	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.0722	0/0:164:164,0:164:5853:0:0:0,-49.3689,-497.04	0/0:119:118,0:118:4186:0:0:0,-35.5215,-356.502	0/0:82:82,0:82:2924:0:0:0,-24.6845,-251.604	0/1:4:2,2:2:72:2:72:-5.38431,0,-4.90936	0/1:201:61,140:61:2184:140:4969:-340.097,0,-127.541	0/1:66:17,49:17:599:49:1710:-116.316,0,-32.4606	0/1:240:80,160:80:2837:160:5679:-390.29,0,-172.484	0/1:84:18,66:18:640:66:2342:-165.434,0,-32.2115	0/0:48:48,0:48:1706:0:0:0,-14.4494,-152.278	0/0:98:98,0:98:3497:0:0:0,-29.5009,-298.953	0/0:171:171,0:171:6064:0:0:0,-51.4761,-523.838	0/1:228:74,154:74:2647:154:5478:-381.236,0,-168.656	0/1:143:44,99:44:1572:99:3520:-247.666,0,-97.2997	0/0:116:116,0:116:4110:0:0:0,-34.9195,-367.668	0/0:190:190,0:190:6761:0:0:0,-57.1957,-576.905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2573	0/0:167:167,0:167:5901:0:0:0,-50.272,-511.05	0/1:47:11,36:11:392:36:1279:-92.0413,0,-19.8125	0/0:13:13,0:13:464:0:0:0,-3.91339,-40.172	0/1:212:81,131:81:2869:131:4641:-311.262,0,-182.83	0/1:85:31,54:31:1112:54:1936:-137.002,0,-73.6847	0/1:7:4,3:4:144:3:108:-7.65535,0,-10.5601	0/1:15:3,12:3:108:12:409:-29.8995,0,-5.07063	0/1:110:34,76:34:1207:76:2711:-180.131,0,-71.1006	0/0:80:79,1:79:2762:1:36:0,-20.6279,-244.076	0/0:8:8,0:8:279:0:0:0,-2.40824,-24.8407	0/1:191:68,123:68:2432:123:4390:-312.066,0,-149.598	0/1:260:107,153:107:3806:153:5458:-372.395,0,-262.029	0/1:130:67,62:67:2379:62:2224:-138.593,0,-164.965	0/0:96:96,0:96:3386:0:0:0,-28.8989,-302.59	0/0:121:120,1:120:4236:1:36:0,-33.237,-375.894	0/0:93:93,0:93:3303:0:0:0,-27.9958,-295.06	0/0:19:19,0:19:684:0:0:0,-5.71957,-59.441	0/0:89:89,0:89:3141:0:0:0,-26.7917,-272.727	0/0:61:61,0:61:2144:0:0:0,-18.3628,-184.329	0/1:32:5,27:5:165:27:959:-68.7188,0,-5.48072	0/0:93:93,0:93:3307:0:0:0,-27.9958,-287.572	0/0:90:90,0:90:3207:0:0:0,-27.0927,-278.341	0/0:148:148,0:148:5252:0:0:0,-44.5524,-450.907	0/0:170:170,0:170:6061:0:0:0,-51.1751,-540.911	0/1:173:57,116:57:2020:116:4134:-276.313,0,-123.163	0/0:149:148,1:148:5248:1:36:0,-41.9507,-454.142	0/1:17:4,13:4:140:13:456:-32.8214,0,-7.45381	0/0:164:163,1:163:5814:1:36:0,-46.3144,-498.086	0/0:163:162,1:162:5720:1:36:0,-45.4722,-488.546	0/0:240:239,1:239:8515:1:36:0,-69.0596,-756.684	0/0:86:86,0:86:3021:0:0:0,-25.8886,-269.535	0/0:72:72,0:72:2547:0:0:0,-21.6742,-226.224	0/1:104:40,64:40:1423:64:2279:-157.296,0,-95.6417	0/0:114:113,1:113:3962:1:36:0,-30.8629,-350.367	0/0:33:33,0:33:1166:0:0:0,-9.93399,-100.821	0/0:54:54,0:54:1891:0:0:0,-16.2556,-165.444	0/0:58:58,0:58:2039:0:0:0,-17.4597,-176.971	0/0:29:29,0:29:1036:0:0:0,-8.72987,-87.7909	0/1:103:21,82:21:752:82:2907:-195.974,0,-32.6365	0/1:116:28,88:28:991:88:3145:-224.323,0,-53.7697	0/0:52:52,0:52:1855:0:0:0,-15.6536,-165.449	0/0:115:115,0:115:4054:0:0:0,-34.6184,-361.632
chr04	25499082	.	C	G	139840	PASS	AB=0.337229;ABP=1243.63;AC=148;AF=0.787234;AN=188;AO=7245;CIGAR=1X;DP=10845;DPB=10845;DPRA=0;EPP=15735.3;EPPR=7807.28;GTI=8;LEN=1;MEANALT=1.06383;MQM=42.742;MQMR=36.1917;NS=94;NUMALT=1;ODDS=0.939883;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256780;QR=127799;RO=3594;RPL=1;RPP=15726.6;RPPR=3.0103;RPR=7244;RUN=1;SAF=1;SAP=15726.6;SAR=7244;SRF=1797;SRP=3.0103;SRR=1797;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:109:65,44:65:2324:44:1553:-101.325,0,-154.854	1/1:130:3,127:3:108:127:4531:-382.648,-30.4668,0	1/1:340:0,340:0:0:340:12072:-1044.24,-102.35,0	1/1:165:1,164:1:36:164:5841:-517.636,-46.2155,0	1/1:98:3,95:3:108:95:3371:-281.715,-20.5749,0	1/1:65:0,65:0:0:65:2324:-202.029,-19.567,0	0/1:131:102,29:102:3570:29:1021:-51.9995,0,-252.577	0/1:267:149,118:149:5316:118:4193:-283.342,0,-353.02	1/1:99:4,95:4:144:95:3349:-276.536,-16.8084,0	1/1:79:0,79:0:0:79:2801:-250.234,-23.7814,0	0/1:68:49,19:49:1744:19:663:-38.6796,0,-123.975	1/1:70:0,70:0:0:70:2481:-214.629,-21.0721,0	1/1:65:0,64:0:0:64:2263:-195.573,-19.2659,0	1/1:53:0,53:0:0:53:1858:-160.611,-15.9546,0	1/1:58:0,58:0:0:58:2060:-183.797,-17.4597,0	0/1:92:61,31:61:2164:31:1116:-68.4059,0,-145.874	1/1:67:0,67:0:0:67:2392:-204.792,-20.169,0	0/1:89:60,29:60:2156:29:1036:-62.3615,0,-145.459	0/1:60:41,19:41:1468:19:667:-39.433,0,-102.229	0/1:321:213,108:213:7583:108:3811:-242.982,0,-528.999	0/1:226:156,70:156:5547:70:2504:-148.519,0,-386.197	1/1:74:2,72:2:72:72:2579:-212.728,-15.6876,0	0/1:61:37,24:37:1328:24:830:-55.8668,0,-88.2165	0/1:214:136,78:136:4815:78:2756:-174.82,0,-326.864	1/1:145:1,144:1:36:144:5041:-430.641,-40.6686,0	0/1:277:199,78:199:7082:78:2783:-155.082,0,-518.578	0/1:555:348,206:348:12365:206:7287:-455.931,0,-853.425	0/1:61:47,14:47:1661:14:504:-24.8576,0,-114.635	1/1:366:1,365:1:36:365:12994:-1107.42,-106.878,0	0/1:139:93,46:93:3332:46:1616:-98.2819,0,-223.569	0/1:134:92,42:92:3259:42:1485:-91.7391,0,-226.74	0/1:13:7,6:7:252:6:207:-13.2099,0,-17.8536	0/1:14:11,3:11:396:3:108:-5.48261,0,-26.1782	1/1:5:0,5:0:0:5:180:-16.0112,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.1438,-1.80618,0	1/1:13:0,13:0:0:13:464:-40.7707,-3.91339,0	1/1:165:0,165:0:0:165:5879:-500.462,-49.67,0	1/1:119:0,119:0:0:119:4233:-361.335,-35.8226,0	1/1:82:0,82:0:0:82:2892:-248.984,-24.6845,0	0/1:4:2,2:2:72:2:72:-4.90936,0,-5.38431	0/1:201:141,60:141:5023:60:2103:-120.946,0,-343.008	0/1:67:50,17:50:1747:17:604:-32.4237,0,-119.887	0/1:244:162,82:162:5767:82:2880:-175.202,0,-396.86	0/1:85:67,18:67:2374:18:648:-32.4686,0,-167.818	1/1:49:0,49:0:0:49:1734:-154.245,-14.7505,0	1/1:97:0,97:0:0:97:3443:-294.777,-29.1999,0	1/1:171:0,170:0:0:170:5989:-517.644,-51.1751,0	0/1:227:153,74:153:5424:74:2626:-167.088,0,-377.762	0/1:139:96,43:96:3429:43:1536:-95.4644,0,-240.663	1/1:116:0,116:0:0:116:4121:-368.734,-34.9195,0	1/1:191:0,191:0:0:191:6779:-577.945,-57.4967,0	1/1:4:0,4:0:0:4:126:-11.6196,-1.20412,0	1/1:166:0,166:0:0:166:5887:-509.935,-49.971,0	0/1:47:36,11:36:1280:11:396:-20.0876,0,-92.187	1/1:12:0,12:0:0:12:428:-37.0387,-3.61236,0	0/1:208:129,79:129:4574:79:2780:-176.08,0,-306.591	0/1:88:57,31:57:2020:31:1108:-72.5806,0,-143.342	0/1:6:3,3:3:108:3:104:-7.49751,0,-7.95638	0/1:14:11,3:11:392:3:108:-5.37166,0,-28.5733	0/1:110:76,34:76:2689:34:1200:-70.4476,0,-178.732	1/1:76:1,75:1:36:75:2641:-233.194,-19.4238,0	1/1:8:0,8:0:0:8:284:-25.056,-2.40824,0	0/1:185:118,67:118:4202:67:2374:-146.903,0,-298.536	0/1:262:155,107:155:5538:107:3777:-258.771,0,-376.577	0/1:130:62,68:62:2224:68:2419:-168.689,0,-138.763	1/1:96:0,96:0:0:96:3380:-302.189,-28.8989,0	1/1:120:1,119:1:36:119:4208:-373.451,-32.936,0	1/1:94:0,94:0:0:94:3304:-295.037,-28.2968,0	1/1:18:0,18:0:0:18:640:-55.7316,-5.41854,0	1/1:89:0,89:0:0:89:3121:-271.242,-26.7917,0	1/1:60:0,60:0:0:60:2116:-181.565,-18.0618,0	0/1:32:27,5:27:947:5:171:-5.9405,0,-68.0697	1/1:94:0,94:0:0:94:3337:-289.974,-28.2968,0	1/1:91:0,90:0:0:90:3212:-278.572,-27.0927,0	1/1:147:0,147:0:0:147:5175:-444.089,-44.2514,0	1/1:174:0,174:0:0:174:6190:-552.54,-52.3792,0	0/1:175:117,58:117:4165:58:2058:-126.293,0,-278.968	1/1:147:1,145:1:36:145:5159:-446.101,-41.3668,0	0/1:17:13,4:13:468:4:144:-7.76106,0,-33.3318	1/1:164:1,163:1:36:163:5793:-496.041,-46.3144,0	1/1:163:1,162:1:36:162:5783:-493.804,-45.4722,0	1/1:239:1,238:1:36:238:8507:-755.878,-68.7585,0	1/1:85:0,85:0:0:85:2997:-267.331,-25.5876,0	1/1:71:0,71:0:0:71:2515:-223.355,-21.3731,0	0/1:102:64,38:64:2288:38:1347:-89.6421,0,-158.12	1/1:112:1,111:1:36:111:3850:-340.666,-30.2609,0	1/1:33:0,32:0:0:32:1140:-97.8456,-9.63296,0	1/1:53:0,53:0:0:53:1889:-164.982,-15.9546,0	1/1:58:0,58:0:0:58:2032:-176.352,-17.4597,0	1/1:29:0,29:0:0:29:1032:-87.473,-8.72987,0	0/1:104:82,22:82:2886:22:774:-34.3297,0,-194.7	0/1:113:85,28:85:3028:28:993:-54.9751,0,-216.61	1/1:51:0,51:0:0:51:1819:-162.42,-15.3525,0	1/1:112:0,112:0:0:112:3966:-353.697,-33.7154,0
chr04	25499228	.	C	T	13036.6	PASS	AB=0.533471;ABP=17.1106;AC=38;AF=0.202128;AN=188;AO=778;CIGAR=1X;DP=3506;DPB=3506;DPRA=1.13391;EPP=1692.42;EPPR=5926.79;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=59.9879;NS=94;NUMALT=1;ODDS=0.141091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27816;QR=96827;RO=2728;RPL=0;RPP=1692.42;RPPR=5926.79;RPR=778;RUN=1;SAF=0;SAP=1692.42;SAR=778;SRF=0;SRP=5926.79;SRR=2728;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.8843	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:84:84,0:84:2952:0:0:0,-25.2865,-265.915	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:65:33,32:33:1164:32:1148:-84.0629,0,-85.5	0/1:41:15,26:15:536:26:924:-71.1354,0,-36.2326	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:43:43,0:43:1510:0:0:0,-12.9443,-136.192	0/1:30:22,8:22:784:8:288:-17.2365,0,-61.853	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:34:14,20:14:504:20:716:-54.5327,0,-35.4631	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:18:8,10:8:279:10:360:-27.3258,0,-20.029	0/1:25:15,10:15:532:10:360:-25.2186,0,-40.6873	0/1:44:23,21:23:824:21:752:-54.7609,0,-61.238	0/1:80:45,35:45:1605:35:1254:-89.0825,0,-120.656	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	0/1:29:14,15:14:504:15:536:-39.8449,0,-36.9682	0/0:28:28,0:28:983:0:0:0,-8.42884,-88.7825	0/1:89:52,37:52:1859:37:1311:-91.4992,0,-140.797	0/1:74:36,38:36:1273:38:1360:-100.424,0,-92.5947	0/1:19:10,9:10:352:9:324:-23.7863,0,-26.2869	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/1:58:29,29:29:1036:29:1032:-75.7337,0,-76.0942	0/1:46:21,25:21:739:25:896:-67.113,0,-52.985	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:116:116,0:116:4113:0:0:0,-34.9195,-370.357	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:4:1,3:1:36:3:93:-7.47261,0,-2.39415	0/1:31:9,22:9:315:22:792:-62.2737,0,-19.3553	0/1:34:15,19:15:519:19:680:-51.2941,0,-36.8017	0/1:62:26,36:26:928:36:1281:-96.9274,0,-65.1744	0/1:40:21,19:21:752:19:684:-49.8491,0,-55.9651	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/1:28:17,11:17:603:11:396:-27.5539,0,-46.1707	0/1:41:15,26:15:532:26:932:-71.8566,0,-35.8709	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:59:58,1:58:2059:1:36:0,-14.1625,-181.983	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/1:40:17,23:17:612:23:820:-62.0813,0,-43.3722	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:34:9,25:9:320:25:896:-70.7253,0,-18.9073	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:50:24,26:24:832:26:936:-69.508,0,-60.1425	0/0:88:88,0:88:3104:0:0:0,-26.4906,-279.588	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:67:29,38:29:1006:38:1364:-102.892,0,-70.6775	0/1:62:33,29:33:1157:29:1032:-74.5296,0,-85.7706	0/1:30:15,15:15:536:15:540:-39.9056,0,-39.5439	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:37:36,1:36:1262:1:36:0,-7.53983,-110.283	0/0:91:91,0:91:3228:0:0:0,-27.3937,-290.742	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:20:5,15:5:165:15:540:-42.9159,0,-9.153	0/0:54:54,0:54:1915:0:0:0,-16.2556,-172.627	0/0:38:38,0:38:1350:0:0:0,-11.4391,-121.799	0/0:71:71,0:71:2512:0:0:0,-21.3731,-226.331	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/1:32:16,16:16:572:16:567:-41.7278,0,-42.1805	0/0:43:41,2:41:1445:2:72:0,-6.10757,-123.507	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/0:50:50,0:50:1771:0:0:0,-15.0515,-159.672	0/1:33:13,20:13:464:20:720:-55.1948,0,-32.1635	0/0:88:87,1:87:3079:1:36:0,-22.8924,-273.742	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:81:28,53:28:995:53:1896:-146.535,0,-65.4806	0/1:38:10,28:10:352:28:990:-77.9735,0,-20.5791	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:74:74,0:74:2599:0:0:0,-22.2762,-234.158
chr04	25499240	.	A	C	60069.4	PASS	AB=0.475443;ABP=10.689;AC=150;AF=0.797872;AN=188;AO=2827;CIGAR=1X;DP=3604;DPB=3604;DPRA=0;EPP=6141.76;EPPR=1690.24;GTI=1;LEN=1;MEANALT=1;MQM=59.9798;MQMR=59.9472;NS=94;NUMALT=1;ODDS=3.5574;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100580;QR=27692;RO=777;RPL=0;RPP=6141.76;RPPR=1690.24;RPR=2827;RUN=1;SAF=0;SAP=6141.76;SAR=2827;SRF=0;SRP=1690.24;SRR=777;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:1,7:1:27:7:252:-20.6207,0,-0.291543	1/1:21:0,21:0:0:21:745:-67.3696,-6.32163,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:88:0,88:0:0:88:3131:-282.017,-26.4906,0	1/1:8:0,8:0:0:8:282:-25.7211,-2.40824,0	1/1:17:0,17:0:0:17:599:-54.2381,-5.11751,0	0/1:65:31,34:31:1112:34:1224:-90.9001,0,-80.8244	0/1:41:26,15:26:917:15:536:-36.2326,0,-70.5024	1/1:38:0,38:0:0:38:1332:-120.177,-11.4391,0	1/1:44:0,44:0:0:44:1561:-140.781,-13.2453,0	0/1:29:7,22:7:248:22:788:-62.5149,0,-13.9343	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:39:0,39:0:0:39:1373:-123.867,-11.7402,0	1/1:45:1,44:1:32:44:1564:-137.852,-10.347,0	1/1:39:1,38:1:36:38:1341:-117.601,-8.35257,0	0/1:35:21,14:21:752:14:496:-34.4376,0,-57.4702	1/1:21:0,21:0:0:21:742:-67.1029,-6.32163,0	0/1:18:10,8:10:360:8:279:-20.029,0,-27.3258	0/1:26:10,16:10:360:16:557:-42.6288,0,-24.9175	0/1:48:23,25:23:805:25:896:-66.5109,0,-58.3181	0/1:78:32,46:32:1144:46:1656:-125.848,0,-79.7892	1/1:27:0,27:0:0:27:957:-86.4439,-8.12781,0	0/1:33:17,16:17:612:16:576:-42.241,0,-45.4794	0/1:30:15,15:15:540:15:525:-38.5472,0,-39.9056	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:87:35,52:35:1256:52:1872:-142.569,0,-87.1557	0/1:74:38,36:38:1360:36:1280:-93.227,0,-100.424	0/1:20:9,11:9:324:11:366:-27.2364,0,-23.4853	1/1:67:0,67:0:0:67:2371:-213.646,-20.169,0	0/1:57:30,27:30:1076:27:964:-69.9181,0,-79.9941	0/1:48:25,23:25:900:23:820:-59.6731,0,-66.8716	1/1:5:0,5:0:0:5:167:-15.3576,-1.50515,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:124:0,124:0:0:124:4398:-395.992,-37.3277,0	1/1:13:0,13:0:0:13:452:-41.0111,-3.91339,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:5:3,2:3:108:2:53:-3.19374,0,-8.57002	0/1:30:21,9:21:756:9:324:-20.475,0,-59.3363	0/1:33:18,15:18:648:15:517:-36.9206,0,-48.7179	0/1:60:35,25:35:1237:25:900:-63.2592,0,-93.4643	0/1:40:20,20:20:701:20:716:-52.7265,0,-51.3705	1/1:30:0,30:0:0:30:1040:-93.9065,-9.0309,0	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:29:12,17:12:428:17:608:-46.3222,0,-30.1289	0/1:41:25,16:25:896:16:572:-39.4712,0,-68.6181	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:62:1,61:1:36:61:2180:-192.868,-15.0656,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:36:0,36:0:0:36:1277:-115.231,-10.8371,0	0/1:40:22,18:22:792:18:644:-46.2494,0,-59.5645	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:36:24,12:24:855:12:432:-28.3841,0,-66.4331	0/1:8:6,2:6:212:2:68:-4.04947,0,-17.0166	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:14:4,10:4:140:10:356:-28.1668,0,-8.73016	0/1:52:27,25:27:960:25:896:-65.3068,0,-71.0627	1/1:95:0,95:0:0:95:3368:-303.336,-28.5979,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:66:38,28:38:1356:28:1008:-71.1684,0,-102.473	0/1:63:30,33:30:1061:33:1180:-87.5432,0,-76.8345	0/1:31:16,15:16:567:15:540:-39.6046,0,-42.0288	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:39:1,38:1:32:38:1351:-118.69,-8.54086,0	1/1:94:0,94:0:0:94:3361:-302.705,-28.2968,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:21:16,5:16:568:5:180:-10.2304,0,-45.1302	1/1:58:0,58:0:0:58:2056:-185.309,-17.4597,0	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	1/1:76:0,76:0:0:76:2704:-243.602,-22.8783,0	1/1:57:1,56:1:36:56:2003:-176.945,-13.5604,0	0/1:32:16,16:16:557:16:564:-41.4573,0,-40.8226	1/1:44:2,42:2:72:42:1504:-128.818,-6.4086,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:69:0,69:0:0:69:2449:-220.664,-20.7711,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:34:19,15:19:676:15:532:-37.9781,0,-50.933	1/1:96:1,95:1:36:95:3354:-298.477,-25.3006,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:82:51,31:51:1813:31:1097:-74.3536,0,-138.765	0/1:38:28,10:28:1000:10:352:-20.5791,0,-78.8762	1/1:43:0,43:0:0:43:1533:-138.261,-12.9443,0	1/1:76:0,76:0:0:76:2711:-244.234,-22.8783,0
chr04	25516164	.	A	G	30368.6	PASS	AB=0.597758;ABP=239.912;AC=40;AF=0.212766;AN=188;AO=1715;CIGAR=1X;DP=6537;DPB=6537;DPRA=1.01664;EPP=3701.07;EPPR=10359.1;GTI=3;LEN=1;MEANALT=1;MQM=59.9569;MQMR=59.9797;NS=94;NUMALT=1;ODDS=0.932499;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61269;QR=171019;RO=4821;RPL=3;RPP=3701.07;RPPR=10359.1;RPR=1712;RUN=1;SAF=1715;SAP=3727.09;SAR=0;SRF=4821;SRP=10471.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:8,23:8:269:23:813:-64.1572,0,-15.2042	0/0:65:64,1:64:2273:1:36:0,-15.9687,-201.233	0/0:104:104,0:104:3721:0:0:0,-31.3071,-335.09	0/0:147:147,0:147:5128:0:0:0,-44.2514,-461.663	0/0:46:46,0:46:1625:0:0:0,-13.8474,-146.537	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:123:57,66:57:2025:66:2353:-175.001,0,-145.494	0/1:98:38,60:38:1333:60:2118:-161.385,0,-90.7554	0/0:60:60,0:60:2095:0:0:0,-18.0618,-188.625	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.016	0/1:47:27,20:27:972:20:716:-50.6193,0,-73.6495	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:49:48,1:48:1724:1:36:0,-11.1522,-151.847	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/1:47:21,26:21:756:26:932:-70.0505,0,-54.2188	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/1:45:24,21:24:837:21:756:-54.8209,0,-62.0993	0/1:39:17,22:17:608:22:788:-59.5046,0,-43.3119	0/1:177:71,106:71:2544:106:3785:-287.565,0,-175.928	0/1:143:57,86:57:2036:86:3088:-235.1,0,-140.465	0/0:72:72,0:72:2481:0:0:0,-21.6742,-223.539	0/1:31:14,17:14:504:17:612:-46.0815,0,-36.3662	0/1:92:37,55:37:1289:55:1976:-150.42,0,-88.6141	0/0:43:42,1:42:1493:1:36:0,-9.34601,-129.7	0/1:191:82,109:82:2909:109:3896:-293.338,0,-204.549	0/1:169:76,93:76:2687:93:3336:-249.583,0,-191.197	0/1:40:21,19:21:741:19:665:-48.1326,0,-54.9704	0/0:234:234,0:234:8294:0:0:0,-70.441,-746.456	0/1:56:20,36:20:720:36:1296:-100.078,0,-48.2711	0/1:81:43,38:43:1498:38:1364:-98.6773,0,-110.726	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:22:3,19:3:108:19:684:-55.2677,0,-3.45251	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:165:165,0:165:5862:0:0:0,-49.6699,-527.693	0/0:130:130,0:130:4531:0:0:0,-39.1339,-407.957	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:120:46,74:46:1622:74:2652:-202.795,0,-110.141	0/1:44:19,25:19:669:25:896:-67.715,0,-47.2886	0/1:98:39,59:39:1377:59:2111:-160.753,0,-94.7257	0/1:50:22,28:22:788:28:1000:-75.2639,0,-56.1933	0/0:48:48,0:48:1697:0:0:0,-14.4494,-153.014	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.377	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:141:42,99:42:1462:99:3505:-273.211,0,-89.4252	0/1:114:27,87:27:972:87:3111:-245.898,0,-53.4805	0/0:105:105,0:105:3688:0:0:0,-31.6081,-332.122	0/0:54:54,0:54:1898:0:0:0,-16.2556,-171.094	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:96:96,0:96:3398:0:0:0,-28.8989,-306.034	0/1:18:3,15:3:108:15:532:-42.7945,0,-4.65663	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:124:47,77:47:1653:77:2745:-209.473,0,-111.728	0/1:34:17,17:17:608:17:608:-44.817,0,-44.817	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:21:15,6:15:536:6:216:-13.4689,0,-42.2532	0/1:35:6,29:6:216:29:1028:-82.2918,0,-9.25446	0/0:77:76,0:76:2724:0:0:0,-22.8783,-245.041	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:163:61,102:61:2169:102:3637:-278.466,0,-146.407	0/1:133:50,83:50:1781:83:2969:-227.4,0,-120.534	0/1:42:17,25:17:612:25:891:-67.8662,0,-42.7702	0/0:112:112,0:112:3973:0:0:0,-33.7154,-357.76	0/0:84:83,1:83:2961:1:36:0,-21.6882,-263.124	0/0:81:81,0:81:2863:0:0:0,-24.3834,-257.904	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:39:39,0:39:1389:0:0:0,-11.7402,-125.307	0/0:81:81,0:81:2880:0:0:0,-24.3834,-259.437	0/1:8:3,5:3:100:5:176:-13.7768,0,-6.9222	0/0:63:63,0:63:2200:0:0:0,-18.9649,-198.259	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.871	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.546	0/0:140:140,0:140:4967:0:0:0,-42.1442,-447.178	0/1:64:17,47:17:612:47:1674:-131.681,0,-36.1475	0/0:97:96,1:96:3410:1:36:0,-25.6016,-303.514	0/1:16:10,6:10:352:6:212:-14.6083,0,-27.2017	0/0:124:124,0:124:4386:0:0:0,-37.3277,-394.915	0/0:75:75,0:75:2661:0:0:0,-22.5772,-239.735	0/0:129:129,0:129:4597:0:0:0,-38.8329,-413.893	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:62:34,28:34:1224:28:1008:-72.3725,0,-91.8032	0/0:98:97,1:97:3453:1:36:0,-25.9027,-307.384	0/0:29:29,0:29:1021:0:0:0,-8.72987,-92.2003	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:44:43,1:43:1540:1:36:0,-9.64704,-135.295	0/0:31:29,2:29:1032:2:72:0,-2.49521,-86.3568	0/1:69:30,39:30:1064:39:1396:-105.168,0,-75.3006	0/1:51:19,32:19:680:32:1148:-88.2773,0,-46.1766	0/0:63:63,0:63:2229:0:0:0,-18.9649,-200.873	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675
chr04	25534699	.	G	A	98817.8	PASS	AB=0.438895;ABP=88.7264;AC=139;AF=0.747312;AN=186;AO=4675;CIGAR=1X;DP=7778;DPB=7778;DPRA=0.317501;EPP=10154.6;EPPR=6738.92;GTI=14;LEN=1;MEANALT=1.01111;MQM=59.4543;MQMR=59.9246;NS=93;NUMALT=1;ODDS=0.472826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167360;QR=110905;RO=3102;RPL=0;RPP=10154.6;RPPR=6738.92;RPR=4675;RUN=1;SAF=4675;SAP=10154.6;SAR=0;SRF=3102;SRP=6738.92;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:35:0,35:0:0:35:1240:-111.879,-10.5361,0	1/1:80:0,79:0:0:79:2821:-253.745,-23.7814,0	1/1:236:0,236:0:0:236:8449:-760.055,-71.0431,0	1/1:6:0,6:0:0:6:208:-19.0585,-1.80618,0	1/1:28:2,26:2:68:26:936:-77.988,-1.97113,0	0/1:50:30,20:30:1080:20:716:-49.6877,0,-82.4618	0/1:89:43,46:43:1532:46:1644:-121.371,0,-111.381	1/1:73:0,73:0:0:73:2624:-236.237,-21.9752,0	1/1:75:0,75:0:0:75:2688:-242.05,-22.5773,0	0/1:114:100,14:100:3596:14:504:-11.3807,0,-289.528	1/1:89:0,89:0:0:89:3204:-288.553,-26.7917,0	1/1:75:0,75:0:0:75:2700:-243.183,-22.5773,0	1/1:50:0,50:0:0:50:1796:-161.866,-15.0515,0	1/1:57:0,57:0:0:57:2018:-181.861,-17.1587,0	0/1:39:10,29:10:360:29:1036:-81.7565,0,-21.0041	1/1:48:0,48:0:0:48:1724:-155.417,-14.4494,0	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/1:48:38,10:38:1364:10:360:-18.2376,0,-108.611	0/1:124:39,85:39:1392:85:3048:-237.153,0,-88.2466	0/1:116:55,61:55:1976:61:2188:-162.196,0,-143.195	1/1:63:0,63:0:0:63:2264:-203.937,-18.9649,0	0/1:68:36,32:36:1292:32:1152:-83.3734,0,-96.1137	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:185:91,94:91:3260:94:3349:-245.876,0,-237.902	0/1:164:81,83:81:2904:83:2958:-216.975,0,-212.226	0/1:25:9,16:9:324:16:572:-44.2877,0,-21.9801	1/1:239:0,239:0:0:239:8587:-772.553,-71.9462,0	0/1:101:42,59:42:1512:59:2097:-158.104,0,-105.971	0/1:89:52,37:52:1860:37:1328:-92.9177,0,-140.888	0/0:286:286,0:286:10214:0:0:0,-86.0946,-919.188	0/0:215:213,2:213:7644:2:72:0,-57.8847,-681.127	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:360:-32.687,-3.0103,0	1/1:5:0,5:0:0:5:180:-16.0518,-1.50515,0	1/1:150:0,150:0:0:150:5396:-485.654,-45.1545,0	1/1:119:1,118:1:36:118:4213:-375.667,-32.2243,0	1/1:36:0,36:0:0:36:1296:-116.916,-10.8371,0	0/0:231:231,0:231:8276:0:0:0,-69.5379,-744.814	0/1:66:40,26:40:1436:26:936:-64.6346,0,-109.625	0/1:71:60,11:60:2156:11:396:-14.581,0,-172.934	0/1:40:16,24:16:576:24:849:-64.65,0,-40.1338	0/1:45:20,25:20:716:25:896:-67.38,0,-51.2214	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:50:0,50:0:0:50:1780:-160.426,-15.0515,0	1/1:100:0,100:0:0:100:3573:-321.613,-30.103,0	0/1:123:69,54:69:2465:54:1944:-138.116,0,-185.076	0/1:49:34,15:34:1209:15:540:-34.1861,0,-94.3555	1/1:74:0,74:0:0:74:2664:-239.892,-22.2762,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:49:0,49:0:0:49:1756:-158.295,-14.7505,0	0/1:48:25,23:25:892:23:820:-59.6493,0,-66.1502	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:136:62,74:62:2205:74:2626:-195.621,0,-157.772	0/1:24:19,5:19:680:5:180:-9.32734,0,-54.1137	0/0:307:306,1:306:10931:1:36:0,-88.8179,-980.079	0/0:168:165,3:165:5897:3:108:0,-40.4979,-519.649	0/1:62:31,31:31:1093:31:1116:-82.0235,0,-80.0138	1/1:61:0,61:0:0:61:2170:-195.016,-18.3628,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:98:18,80:18:640:80:2872:-229.102,0,-28.4284	0/1:132:76,56:76:2716:56:2012:-141.532,0,-204.948	0/1:18:5,13:5:180:13:468:-37.0411,0,-11.1335	1/1:52:0,52:0:0:52:1872:-168.701,-15.6536,0	1/1:94:0,94:0:0:94:3349:-301.491,-28.2968,0	1/1:102:1,101:1:36:101:3617:-322.101,-27.1068,0	1/1:18:0,18:0:0:18:636:-57.5647,-5.41854,0	1/1:22:0,22:0:0:22:788:-71.2163,-6.62266,0	1/1:45:0,45:0:0:45:1616:-145.725,-13.5464,0	0/0:195:192,3:192:6856:3:108:0,-48.655,-606.489	1/1:51:0,51:0:0:51:1823:-163.155,-15.3525,0	1/1:57:0,57:0:0:57:2044:-184.133,-17.1587,0	1/1:117:0,117:0:0:117:4189:-377.046,-35.2205,0	1/1:101:0,101:0:0:101:3609:-324.175,-30.404,0	0/1:91:52,39:52:1864:39:1370:-96.1946,0,-140.646	1/1:62:0,62:0:0:62:2175:-195.488,-18.6639,0	0/0:222:222,0:222:7915:0:0:0,-66.8287,-712.374	1/1:71:0,71:0:0:71:2518:-226.367,-21.3731,0	1/1:72:0,72:0:0:72:2580:-232.336,-21.6742,0	1/1:108:0,108:0:0:108:3884:-349.753,-32.5112,0	1/1:45:0,45:0:0:45:1616:-145.664,-13.5464,0	1/1:55:0,55:0:0:55:1972:-177.192,-16.5567,0	0/1:37:18,19:18:633:19:665:-49.0062,0,-46.157	1/1:124:0,124:0:0:124:4460:-401.511,-37.3277,0	1/1:21:0,21:0:0:21:756:-68.3388,-6.32163,0	1/1:78:0,78:0:0:78:2785:-250.852,-23.4803,0	1/1:86:0,86:0:0:86:3088:-278.097,-25.8886,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:294:260,34:260:9255:34:1224:-21.9358,0,-744.416	0/1:45:30,15:30:1072:15:540:-35.3902,0,-83.2461	1/1:104:0,104:0:0:104:3716:-334.601,-31.3071,0	1/1:76:0,76:0:0:76:2717:-244.681,-22.8783,0
chr04	25578561	.	G	A	25129.6	PASS	AB=0.495062;ABP=3.69659;AC=40;AF=0.212766;AN=188;AO=1609;CIGAR=1X;DP=7696;DPB=7696;DPRA=1.05381;EPP=3496.91;EPPR=13207.7;GTI=1;LEN=1;MEANALT=1.02222;MQM=42.954;MQMR=54.42;NS=94;NUMALT=1;ODDS=1.92684;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57122;QR=215039;RO=6085;RPL=0;RPP=3496.91;RPPR=13199.1;RPR=1609;RUN=1;SAF=0;SAP=3496.91;SAR=1609;SRF=3;SRP=13190.4;SRR=6082;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:14,12:14:500:12:409:-28.2097,0,-37.2165	0/0:167:167,0:167:5978:0:0:0,-50.272,-536.527	0/0:115:115,0:115:4099:0:0:0,-34.6184,-366.782	0/0:139:139,0:139:4884:0:0:0,-41.8432,-439.458	0/1:48:42,6:42:1499:6:216:-4.91611,0,-120.312	0/0:32:32,0:32:1121:0:0:0,-9.63296,-100.83	0/1:75:36,39:36:1277:39:1384:-100.626,0,-92.5964	0/1:170:84,86:84:2950:86:3029:-211.426,0,-213.482	0/0:55:55,0:55:1950:0:0:0,-16.5566,-174.787	0/0:97:97,0:97:3449:0:0:0,-29.1999,-310.406	0/1:131:59,72:59:2096:72:2551:-185.976,0,-149.34	0/0:62:62,0:62:2191:0:0:0,-18.6639,-196.98	0/0:66:66,0:66:2322:0:0:0,-19.868,-207.75	0/0:135:135,0:135:4792:0:0:0,-40.639,-430.586	0/0:58:58,0:58:2060:0:0:0,-17.4597,-185.491	0/1:68:34,34:34:1171:34:1205:-84.843,0,-84.9971	0/0:125:125,0:125:4430:0:0:0,-37.6287,-397.344	0/1:90:51,39:51:1817:39:1388:-92.7491,0,-136.278	0/1:46:24,22:24:860:22:788:-55.0551,0,-63.5331	0/1:182:94,88:94:3336:88:3112:-218.395,0,-245.402	0/1:126:75,51:75:2629:51:1808:-120.799,0,-198.613	0/0:45:45,0:45:1584:0:0:0,-13.5463,-142.801	0/1:27:8,19:8:273:19:653:-49.7181,0,-16.7614	0/1:63:25,38:25:896:38:1360:-99.1775,0,-61.8646	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.646	0/1:195:97,98:97:3436:98:3452:-246.18,0,-250.606	0/1:153:71,81:71:2513:81:2874:-202.895,0,-179.608	0/1:23:10,13:10:352:13:468:-34.6492,0,-24.9213	0/0:178:178,0:178:6332:0:0:0,-53.5833,-569.606	0/1:119:61,58:61:2153:58:2054:-144.852,0,-157.86	0/0:51:51,0:51:1820:0:0:0,-15.3525,-162.541	0/1:9:2,7:2:72:7:243:-19.0279,0,-4.11776	0/1:16:4,12:4:144:12:428:-32.9911,0,-8.47826	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4477	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.4809	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9711	0/0:135:135,0:135:4770:0:0:0,-40.639,-428.878	0/0:84:83,1:83:2929:1:36:0,-21.7655,-259.906	0/0:107:107,0:107:3771:0:0:0,-32.2102,-338.242	0/1:5:3,2:3:108:2:72:-5.18477,0,-8.55573	0/1:138:57,81:57:2018:81:2879:-210.835,0,-140.1	0/1:33:21,12:21:736:12:432:-28.3565,0,-56.3191	0/1:93:45,48:45:1595:48:1720:-123.267,0,-115.525	0/1:68:36,32:36:1280:32:1152:-81.4823,0,-94.8431	0/0:54:54,0:54:1911:0:0:0,-16.2556,-172.104	0/0:40:40,0:40:1428:0:0:0,-12.0412,-127.622	0/0:133:133,0:133:4738:0:0:0,-40.037,-424.083	0/1:111:55,56:55:1972:56:1995:-142.402,0,-143.923	0/1:65:29,36:29:1018:36:1270:-93.2954,0,-72.3154	0/0:164:164,0:164:5760:0:0:0,-49.3689,-517.695	0/0:102:102,0:102:3584:0:0:0,-30.7051,-322.622	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.6009	0/0:129:128,1:128:4508:1:36:0,-35.3522,-401.152	0/1:35:18,17:18:644:17:595:-42.8981,0,-47.7475	0/0:21:21,0:21:729:0:0:0,-6.32163,-65.7724	0/1:129:61,68:61:2163:68:2402:-172.137,0,-155.663	0/1:13:9,4:9:316:4:144:-9.21612,0,-24.841	0/1:11:9,2:9:311:2:72:-3.46561,0,-25.0093	0/1:27:12,15:12:424:15:531:-39.1266,0,-29.8426	0/1:90:48,42:48:1716:42:1504:-105.036,0,-127.262	0/0:110:110,0:110:3892:0:0:0,-33.1133,-350.145	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7134	0/1:108:56,52:56:1976:52:1860:-131.382,0,-145.523	0/1:183:95,88:95:3378:88:3127:-218.809,0,-248.912	0/1:56:34,22:34:1173:22:788:-52.7529,0,-88.7265	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.254	0/0:108:108,0:108:3819:0:0:0,-32.5112,-343.127	0/0:77:76,1:76:2698:1:36:0,-19.6308,-239.189	0/0:61:61,0:61:2154:0:0:0,-18.3628,-193.658	0/0:63:63,0:63:2198:0:0:0,-18.9649,-197.427	0/0:119:119,0:119:4171:0:0:0,-35.8226,-375.272	0/1:31:13,18:13:464:18:648:-48.484,0,-32.7027	0/0:65:65,0:65:2292:0:0:0,-19.5669,-206.001	0/0:52:52,0:52:1839:0:0:0,-15.6536,-164.683	0/0:50:50,0:50:1755:0:0:0,-15.0515,-157.583	0/0:96:96,0:96:3433:0:0:0,-28.8989,-308.091	0/1:189:90,99:90:3147:99:3543:-246.609,0,-225.022	0/0:139:138,1:138:4854:1:36:0,-38.3625,-431.384	0/1:10:7,3:7:252:3:108:-6.73565,0,-19.8615	0/0:143:143,0:143:5036:0:0:0,-43.0473,-451.634	0/0:137:137,0:137:4858:0:0:0,-41.2411,-435.494	0/0:113:113,0:113:3975:0:0:0,-34.0164,-357.474	0/0:84:84,0:84:2929:0:0:0,-25.2865,-262.796	0/0:79:79,0:79:2795:0:0:0,-23.7814,-251.645	0/1:92:55,37:55:1936:37:1315:-88.8273,0,-146.689	0/0:116:115,1:115:4012:1:36:0,-31.371,-357.513	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.04	0/0:47:47,0:47:1645:0:0:0,-14.1484,-147.485	0/0:78:78,0:78:2764:0:0:0,-23.4803,-247.723	0/0:101:100,0:100:3543:0:0:0,-30.103,-318.14	0/1:128:70,58:70:2480:58:2063:-141.718,0,-184.203	0/1:58:21,37:21:752:37:1300:-98.2148,0,-50.4466	0/0:55:55,0:55:1910:0:0:0,-16.5566,-171.807	0/0:103:103,0:103:3587:0:0:0,-31.0061,-322.716
chr04	25619531	.	G	A	17406.7	PASS	AB=0.535129;ABP=21.3178;AC=39;AF=0.207447;AN=188;AO=923;CIGAR=1X;DP=4609;DPB=4609;DPRA=0.952889;EPP=2007.28;EPPR=7976.68;GTI=2;LEN=1;MEANALT=1;MQM=52.3131;MQMR=58.509;NS=94;NUMALT=1;ODDS=0.413828;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32776;QR=130139;RO=3684;RPL=86;RPP=1329.89;RPPR=6421.94;RPR=837;RUN=1;SAF=86;SAP=1329.89;SAR=837;SRF=189;SRP=6445.3;SRR=3495;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:10,10:10:356:10:356:-25.5023,0,-24.6748	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:56:56,0:56:1965:0:0:0,-16.8577,-177.038	0/0:105:104,1:104:3696:1:36:0,-28.0125,-328.891	0/0:115:111,4:111:3925:4:134:0,-22.258,-319.224	0/0:55:55,0:55:1943:0:0:0,-16.5566,-159.257	0/1:76:24,52:24:844:52:1842:-142.826,0,-53.4006	0/1:37:13,24:13:464:24:849:-63.6805,0,-30.9594	0/0:25:25,0:25:869:0:0:0,-7.52575,-78.5239	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/1:41:20,21:20:698:21:751:-55.3018,0,-50.7992	0/0:46:45,1:45:1547:1:36:0,-10.2491,-135.916	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.381	0/0:88:88,0:88:3087:0:0:0,-26.4906,-278.059	0/0:37:37,0:37:1291:0:0:0,-11.1381,-116.487	0/1:43:24,19:24:852:19:660:-46.55,0,-64.0561	0/0:51:51,0:51:1796:0:0:0,-15.3525,-161.919	0/1:27:13,14:13:453:14:491:-35.9162,0,-32.9718	0/1:31:13,18:13:435:18:631:-47.6525,0,-30.1366	0/1:92:45,47:45:1591:47:1677:-120.011,0,-115.699	0/1:51:16,35:16:564:35:1252:-97.4861,0,-35.7378	0/0:74:74,0:74:2635:0:0:0,-22.2762,-229.843	0/1:40:17,23:17:595:23:815:-59.7835,0,-41.8355	0/1:44:16,28:16:563:28:1004:-77.265,0,-37.6235	0/0:42:42,0:42:1491:0:0:0,-12.6433,-132.041	0/1:92:41,51:41:1438:51:1836:-137.396,0,-102.02	0/1:84:48,36:48:1707:36:1279:-89.4794,0,-128.629	0/1:25:9,16:9:324:16:567:-43.762,0,-21.9801	0/0:90:90,0:90:3173:0:0:0,-27.0927,-284.683	0/1:46:26,20:26:932:20:716:-50.0978,0,-69.9225	0/0:74:74,0:74:2618:0:0:0,-22.2762,-235.866	0/1:4:3,1:3:104:1:36:-2.38905,0,-8.49869	0/1:14:5,9:5:176:9:313:-24.1079,0,-11.9706	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:100:100,0:100:3530:0:0:0,-30.103,-317.779	0/0:93:93,0:93:3294:0:0:0,-27.9958,-292.403	0/0:54:54,0:54:1868:0:0:0,-16.2556,-168.391	0/1:6:3,3:3:108:3:108:-7.87619,0,-8.26899	0/1:49:29,20:29:1019:20:720:-50.2788,0,-77.2708	0/1:37:21,16:21:728:16:565:-39.8165,0,-54.6996	0/1:52:19,33:19:668:33:1158:-85.1441,0,-42.0045	0/1:30:19,11:19:667:11:396:-26.9144,0,-51.3237	0/0:32:32,0:32:1114:0:0:0,-9.63296,-100.566	0/0:43:43,0:43:1544:0:0:0,-12.9443,-137.024	0/0:40:40,0:40:1406:0:0:0,-12.0412,-126.836	0/1:61:36,25:36:1254:25:864:-58.6979,0,-94.7978	0/1:69:27,42:27:968:42:1490:-113.176,0,-66.6663	0/0:63:62,1:62:2188:1:36:0,-15.3692,-193.588	0/0:68:68,0:68:2401:0:0:0,-20.47,-216.346	0/0:7:6,0:6:212:0:0:0,-1.80618,-19.1601	0/0:118:118,0:118:4192:0:0:0,-35.5215,-377.462	0/1:25:13,12:13:455:12:432:-31.6275,0,-33.7562	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:47:27,20:27:953:20:712:-50.1642,0,-71.9257	0/1:26:17,9:17:603:9:320:-21.2911,0,-46.5016	0/1:4:1,3:1:36:3:108:-8.86823,0,-2.39415	0/1:10:6,4:6:216:4:144:-10.2996,0,-16.7802	0/1:37:26,11:26:927:11:387:-23.9737,0,-72.6093	0/0:91:91,0:91:3243:0:0:0,-27.3937,-292.092	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:61:23,38:23:815:38:1350:-103.338,0,-55.3079	0/1:80:33,47:33:1167:47:1674:-126.549,0,-81.254	0/1:27:15,12:15:521:12:432:-31.0342,0,-39.0885	0/0:43:42,0:42:1504:0:0:0,-12.6433,-134.863	0/0:71:70,1:70:2512:1:36:0,-17.7774,-222.197	0/0:43:42,1:42:1496:1:36:0,-9.34861,-131.339	0/0:23:23,0:23:800:0:0:0,-6.92369,-72.3158	0/0:19:19,0:19:664:0:0:0,-5.71957,-60.0789	0/0:70:70,0:70:2440:0:0:0,-21.0721,-219.853	0/1:13:11,2:11:392:2:72:-2.9184,0,-31.7067	0/0:64:64,0:64:2229:0:0:0,-19.2659,-198.329	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:74:74,0:74:2616:0:0:0,-22.2762,-233.275	0/0:69:69,0:69:2442:0:0:0,-20.7711,-219.493	0/1:137:59,78:59:2112:78:2752:-189.183,0,-128.315	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/1:9:6,3:6:216:3:108:-7.06971,0,-17.0812	0/0:54:54,0:54:1906:0:0:0,-16.2556,-171.816	0/0:61:61,0:61:2176:0:0:0,-18.3628,-195.55	0/0:86:86,0:86:3012:0:0:0,-25.8886,-271.044	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.115	0/0:36:36,0:36:1270:0:0:0,-10.8371,-114.601	0/1:29:12,17:12:413:17:612:-46.6436,0,-28.768	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.486	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:55:55,0:55:1936:0:0:0,-16.5566,-174.512	0/0:44:44,0:44:1558:0:0:0,-13.2453,-140.51	0/0:60:60,0:60:2115:0:0:0,-18.0618,-190.612	0/1:102:40,62:40:1402:62:2200:-166.992,0,-95.7706	0/1:30:8,22:8:275:22:783:-61.4984,0,-16.0526	0/0:39:39,0:39:1371:0:0:0,-11.7402,-123.688	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.461
chr04	25619557	.	G	T	14120.6	PASS	AB=0.526612;ABP=12.8343;AC=39;AF=0.207447;AN=188;AO=849;CIGAR=1X;DP=4383;DPB=4383;DPRA=0.903228;EPP=1846.59;EPPR=7633.63;GTI=2;LEN=1;MEANALT=1;MQM=54.1767;MQMR=59.9264;NS=94;NUMALT=1;ODDS=1.52833;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30406;QR=126239;RO=3534;RPL=849;RPP=1846.59;RPPR=7633.63;RPR=0;RUN=1;SAF=0;SAP=1846.59;SAR=849;SRF=0;SRP=7676.99;SRR=3534;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:7,7:7:252:7:248:-18.3968,0,-18.8145	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.024	0/0:107:106,1:106:3777:1:36:0,-28.6145,-336.496	0/0:62:58,4:58:2076:4:144:0,-5.4974,-173.943	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4778	0/1:75:24,51:24:856:51:1813:-140.495,0,-54.7839	0/1:33:13,20:13:456:20:701:-53.1384,0,-31.4392	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:43:21,22:21:752:22:792:-58.2979,0,-55.062	0/0:47:47,0:47:1639:0:0:0,-14.1484,-147.794	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.01	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:44:25,19:25:891:19:676:-47.7658,0,-67.2635	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/1:26:13,13:13:460:13:468:-34.1588,0,-33.9086	0/1:32:13,19:13:455:19:684:-52.0867,0,-31.649	0/1:87:44,43:44:1572:43:1548:-113.004,0,-115.582	0/1:52:16,36:16:572:36:1292:-100.776,0,-36.1599	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:31:16,15:16:568:15:540:-39.5693,0,-42.1199	0/1:45:18,27:18:644:27:972:-74.0878,0,-44.614	0/0:36:36,0:36:1276:0:0:0,-10.8371,-115.143	0/1:94:44,50:44:1576:50:1781:-131.955,0,-113.835	0/1:84:48,36:48:1716:36:1296:-91.372,0,-129.439	0/1:25:9,16:9:320:16:576:-44.5763,0,-21.6166	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/1:44:26,18:26:924:18:644:-44.9632,0,-70.2323	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.881	0/1:4:3,1:3:108:1:36:-2.38905,0,-8.87105	0/1:13:4,9:4:144:9:320:-24.9774,0,-9.40023	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:103:103,0:103:3679:0:0:0,-31.0061,-330.249	0/0:85:85,0:85:3032:0:0:0,-25.5875,-273.111	0/0:54:54,0:54:1910:0:0:0,-16.2556,-172.176	0/1:5:3,2:3:108:2:72:-5.32188,0,-8.57002	0/1:50:30,20:30:1072:20:720:-49.9778,0,-81.741	0/1:39:22,17:22:788:17:608:-42.9811,0,-59.5046	0/1:41:12,29:12:428:29:1044:-80.3537,0,-26.5166	0/1:31:20,11:20:720:11:396:-26.6134,0,-55.7968	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.261	0/1:59:37,22:37:1316:22:762:-51.0048,0,-100.981	0/1:69:28,41:28:1004:41:1461:-110.102,0,-69.9048	0/0:64:63,1:63:2264:1:36:0,-15.6702,-200.427	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0266	0/0:120:120,0:120:4292:0:0:0,-36.1236,-386.458	0/1:25:13,12:13:468:12:432:-31.6275,0,-34.9339	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:47:26,21:26:920:21:748:-53.3922,0,-68.9594	0/1:26:16,10:16:572:10:356:-24.5217,0,-43.9866	0/1:5:1,4:1:36:4:144:-11.8047,0,-2.09312	0/1:10:6,4:6:216:4:144:-10.2996,0,-16.7802	0/1:37:26,11:26:932:11:396:-24.7864,0,-73.0608	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:62:25,37:25:900:37:1332:-101.427,0,-62.6572	0/1:80:32,48:32:1132:48:1728:-131.408,0,-78.1062	0/1:28:16,12:16:572:12:432:-30.7332,0,-43.3846	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.447	0/0:68:67,1:67:2387:1:36:0,-16.8744,-211.491	0/0:43:42,1:42:1504:1:36:0,-9.34861,-132.059	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5154	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.682	0/1:12:10,2:10:352:2:72:-3.21943,0,-28.4058	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.613	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.853	0/1:50:21,29:21:756:29:1040:-78.5678,0,-53.3157	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:10:7,3:7:252:3:108:-6.76868,0,-20.0187	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:29:12,17:12:432:17:608:-46.2836,0,-30.4913	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.825	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.344	0/1:105:41,64:41:1456:64:2300:-174.953,0,-99.7278	0/1:31:8,23:8:288:23:828:-65.1165,0,-16.9355	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.48	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935
chr04	25625987	.	AAC	CAT,AAT	122759	PASS	AB=0.421741,0.576455;ABP=120.947,115.571;AC=148,38;AF=0.795699,0.204301;AN=186;AO=4495,1290;CIGAR=1X1M1X,2M1X;DP=5795;DPB=5795;DPRA=0,1.09994;EPP=9763.78,2795.53;EPPR=0;GTI=0;LEN=3,1;MEANALT=1.58065,2.11111;MQM=59.7359,59.8899;MQMR=0;NS=93;NUMALT=2;ODDS=0.610626;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=156602,46060;QR=0;RO=0;RPL=4495,1290;RPP=9763.78,2804.21;RPPR=0;RPR=0,0;RUN=1,1;SAF=4495,1289;SAP=9763.78,2795.53;SAR=0,1;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,8,14:0:0:8,14:274,504:-63.6496,-41.4136,-39.0053,-22.5846,0,-18.3701	1/1:14:0,14,0:0:0:14,0:486,0:-44.0641,-4.21442,0,-44.0641,-4.21442,-44.0641	1/1:52:0,52,0:0:0:52,0:1769,0:-159.063,-15.6536,0,-159.063,-15.6536,-159.063	1/1:65:0,65,0:0:0:65,0:2249,0:-202.668,-19.567,0,-202.668,-19.567,-202.668	1/1:19:0,18,1:0:0:18,1:640,36:-57.5595,-5.41854,0,-54.6218,-2.1213,-54.3208	1/1:23:0,23,0:0:0:23,0:822,0:-74.3032,-6.92369,0,-74.3032,-6.92369,-74.3032	1/2:63:0,26,37:0:0:26,37:926,1328:-184.158,-108.684,-100.857,-75.8315,0,-64.6934	1/2:108:0,39,69:0:0:39,69:1370,2476:-313.809,-202.309,-190.568,-111.854,0,-91.0828	1/1:108:0,108,0:0:0:108,0:3758,0:-338.314,-32.5112,0,-338.314,-32.5112,-338.314	1/1:69:0,69,0:0:0:69,0:2397,0:-215.983,-20.7711,0,-215.983,-20.7711,-215.983	1/2:41:0,10,31:0:0:10,31:350,1099:-118.361,-89.8875,-86.8772,-28.8249,0,-19.493	1/1:71:0,71,0:0:0:71,0:2464,0:-222.011,-21.3731,0,-222.011,-21.3731,-222.011	1/1:74:0,74,0:0:0:74,0:2617,0:-235.717,-22.2762,0,-235.717,-22.2762,-235.717	1/1:90:0,89,1:0:0:89,1:3106,36:-279.385,-26.7917,0,-276.448,-23.4944,-276.147	1/1:69:0,69,0:0:0:69,0:2401,0:-216.349,-20.7711,0,-216.349,-20.7711,-216.349	1/2:32:0,14,18:0:0:14,18:500,644:-93.6306,-52.8674,-48.653,-41.1204,0,-35.7019	1/1:85:0,84,0:0:0:84,0:2907,0:-261.519,-25.2865,0,-261.519,-25.2865,-261.519	1/2:63:0,29,34:0:0:29,34:1009,1216:-181.549,-99.5115,-90.7817,-82.3896,0,-72.1546	1/2:35:0,20,15:0:0:20,15:700,540:-101.361,-44.4211,-38.4005,-57.295,0,-52.7796	1/2:67:0,22,45:0:0:22,45:779,1616:-195.638,-132.184,-125.561,-63.8098,0,-50.2634	1/2:66:0,27,39:0:0:27,39:955,1396:-191.975,-114.192,-106.065,-78.1374,0,-66.3972	1/1:116:0,115,1:0:0:115,1:3966,36:-356.777,-34.6185,0,-353.839,-31.3212,-353.538	1/2:52:0,29,23:0:0:29,23:1037,816:-151.378,-66.838,-58.1082,-84.8962,0,-77.9725	1/2:54:0,30,24:0:0:30,24:1036,860:-154.66,-70.4971,-61.4662,-84.5149,0,-77.2901	1/1:86:0,85,1:0:0:85,1:2995,36:-269.415,-25.5876,0,-266.477,-22.2903,-266.176	1/2:209:0,105,104:0:0:105,104:3650,3732:-601.462,-304.726,-273.118,-297.09,0,-265.782	1/2:111:0,46,65:0:0:46,65:1608,2312:-319.554,-188.759,-174.912,-131.146,0,-111.579	1/2:27:0,12,15:0:0:12,15:430,536:-79.1281,-44.059,-40.4466,-35.4268,0,-30.9114	1/1:82:0,82,0:0:0:82,0:2865,0:-258.084,-24.6845,0,-258.084,-24.6845,-258.084	1/2:58:0,7,51:0:0:7,51:222,1820:-166.59,-148.729,-146.622,-18.1832,0,-2.83064	1/1:49:0,49,0:0:0:49,0:1724,0:-155.432,-14.7505,0,-155.432,-14.7505,-155.432	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/2:8:0,2,6:0:0:2,6:72,216:-23.8545,-17.9797,-17.3776,-6.23466,0,-4.42848	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:14:0,14,0:0:0:14,0:484,0:-43.8876,-4.21442,0,-43.8876,-4.21442,-43.8876	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:226:0,226,0:0:0:226,0:7879,0:-709.159,-68.0328,0,-709.159,-68.0328,-709.159	1/1:175:0,173,2:0:0:173,2:5975,72:-537.262,-52.0782,0,-531.387,-45.8435,-530.785	1/1:50:0,50,0:0:0:50,0:1740,0:-156.872,-15.0515,0,-156.872,-15.0515,-156.872	.:.:.:.:.:.:.:.	1/2:75:0,25,50:0:0:25,50:873,1773:-215.508,-144.797,-137.272,-71.0606,0,-56.0091	1/2:28:0,11,17:0:0:11,17:378,599:-79.6517,-48.9623,-45.651,-31.0359,0,-25.9184	1/2:55:0,25,30:0:0:25,30:892,1080:-161.148,-88.4717,-80.9459,-73.0339,0,-64.003	1/2:57:0,27,29:0:0:27,29:944,1036:-161.275,-84.4828,-76.3549,-76.8053,0,-68.0755	1/1:70:0,70,0:0:0:70,0:2417,0:-217.78,-21.0721,0,-217.78,-21.0721,-217.78	1/1:106:0,106,0:0:0:106,0:3694,0:-332.195,-31.9092,0,-332.195,-31.9092,-332.195	1/1:55:0,55,0:0:0:55,0:1945,0:-175.325,-16.5567,0,-175.325,-16.5567,-175.325	1/2:71:0,23,47:0:0:23,47:796,1688:-202.533,-137.855,-130.932,-64.8213,0,-50.6728	1/2:96:0,53,43:0:0:53,43:1864,1536:-277.319,-125.589,-109.634,-152.084,0,-139.14	1/1:67:0,67,0:0:0:67,0:2292,0:-206.535,-20.169,0,-206.535,-20.169,-206.535	1/1:45:0,45,0:0:0:45,0:1553,0:-140.055,-13.5464,0,-140.055,-13.5464,-140.055	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:47:0,47,0:0:0:47,0:1624,0:-146.439,-14.1484,0,-146.439,-14.1484,-146.439	1/2:21:0,6,15:0:0:6,15:216,540:-62.0456,-44.4211,-42.6149,-17.9843,0,-13.4689	1/1:7:0,7,0:0:0:7,0:238,0:-21.752,-2.10721,0,-21.752,-2.10721,-21.752	1/2:43:0,18,25:0:0:18,25:644,899:-126.181,-73.7006,-68.282,-52.8389,0,-45.3131	1/2:37:0,18,19:0:0:18,19:636,665:-106.251,-54.4532,-49.0347,-52.1489,0,-46.4294	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:11:0,7,4:0: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chr04	25626071	.	G	A	67214.5	PASS	AB=0.388519;ABP=213.619;AC=144;AF=0.774194;AN=186;AO=3221;CIGAR=1X;DP=4447;DPB=4447;DPRA=9.84889;EPP=6997.32;EPPR=2663.06;GTI=2;LEN=1;MEANALT=1.01111;MQM=55.0118;MQMR=59.9486;NS=93;NUMALT=1;ODDS=0.141369;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114897;QR=43262;RO=1225;RPL=0;RPP=6997.32;RPPR=2663.06;RPR=3221;RUN=1;SAF=0;SAP=6997.32;SAR=3221;SRF=0;SRP=2663.06;SRR=1225;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:24,8:24:860:8:288:-16.5035,0,-68.0889	1/1:52:0,52:0:0:52:1864:-167.812,-15.6536,0	1/1:42:0,42:0:0:42:1499:-134.966,-12.6433,0	1/1:77:0,77:0:0:77:2761:-248.498,-23.1793,0	1/1:25:0,25:0:0:25:873:-78.7306,-7.52575,0	1/1:20:0,20:0:0:20:720:-65.0617,-6.0206,0	0/1:47:26,21:26:913:21:727:-51.5372,0,-68.3356	0/1:42:28,14:28:992:14:504:-32.6586,0,-76.9511	1/1:21:0,21:0:0:21:756:-68.2439,-6.32163,0	1/1:26:0,26:0:0:26:932:-83.6502,-7.82678,0	0/1:21:11,10:11:387:10:333:-23.9368,0,-28.8443	1/1:68:0,68:0:0:68:2440:-218.805,-20.47,0	1/1:55:0,55:0:0:55:1950:-175.5,-16.5567,0	1/1:41:0,41:0:0:41:1459:-131.427,-12.3422,0	1/1:40:1,39:1:36:39:1377:-120.364,-8.44293,0	0/1:49:24,25:24:838:25:896:-66.0808,0,-60.9859	1/1:27:0,27:0:0:27:960:-86.5912,-8.12781,0	0/1:18:6,12:6:216:12:432:-33.6588,0,-14.372	0/1:14:6,8:6:212:8:288:-22.0269,0,-15.2104	0/1:127:74,52:74:2623:52:1872:-130.342,0,-198.011	0/1:58:30,28:30:1050:28:990:-71.8072,0,-77.349	1/1:101:1,100:1:36:100:3575:-318.243,-26.8058,0	0/1:55:27,28:27:945:28:1008:-74.3125,0,-68.8056	0/1:32:16,16:16:568:16:576:-42.468,0,-41.8189	1/1:81:0,81:0:0:81:2895:-260.237,-24.3834,0	0/1:124:86,38:86:3051:38:1364:-85.6903,0,-237.492	0/1:136:71,65:71:2495:65:2318:-167.359,0,-183.591	0/1:36:20,16:20:678:16:572:-40.8383,0,-50.4991	1/1:154:0,154:0:0:154:5520:-496.572,-46.3586,0	0/1:111:70,41:70:2478:41:1461:-97.9137,0,-189.859	1/1:27:0,27:0:0:27:972:-87.6506,-8.12781,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:5:1,4:1:36:4:144:-11.7059,0,-2.09312	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-22.9947,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	1/1:153:1,152:1:36:152:5410:-482.684,-42.4593,0	1/1:45:1,44:1:36:44:1546:-135.444,-9.94808,0	1/1:30:1,29:1:36:29:1036:-89.8625,-5.43263,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:57:34,23:34:1207:23:813:-56.2287,0,-91.7766	0/1:21:8,13:8:288:13:464:-35.5068,0,-19.9458	0/1:112:83,29:83:2950:29:1040:-59.847,0,-232.018	0/1:33:16,17:16:551:17:599:-43.9463,0,-39.9805	1/1:42:1,41:1:32:41:1418:-124.253,-9.44395,0	1/1:35:0,35:0:0:35:1252:-112.842,-10.5361,0	1/1:27:0,27:0:0:27:968:-87.1431,-8.12781,0	0/1:90:61,29:61:2176:29:1040:-66.5557,0,-169.014	0/1:49:37,12:37:1283:12:428:-24.0815,0,-101.014	1/1:56:1,55:1:36:55:1968:-173.559,-13.2594,0	1/1:40:0,40:0:0:40:1428:-128.762,-12.0412,0	1/1:3:0,3:0:0:3:108:-9.96534,-0.90309,0	1/1:55:0,55:0:0:55:1980:-178.286,-16.5567,0	0/1:62:45,17:45:1596:17:612:-36.6219,0,-125.266	1/1:2:0,2:0:0:2:72:-6.82968,-0.60206,0	0/1:78:46,32:46:1630:32:1146:-79.7968,0,-123.507	0/1:20:14,6:14:482:6:216:-13.7556,0,-37.6855	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:8,3:8:284:3:99:-5.92177,0,-22.592	0/1:59:43,16:43:1510:16:572:-33.9814,0,-118.415	1/1:90:0,90:0:0:90:3220:-289.794,-27.0927,0	1/1:5:0,5:0:0:5:176:-16.1745,-1.50515,0	0/1:77:49,28:49:1756:28:1004:-67.4688,0,-135.144	0/1:81:56,25:56:1969:25:891:-56.0319,0,-153.1	0/1:33:21,12:21:740:12:424:-28.5198,0,-56.9894	1/1:30:0,30:0:0:30:1065:-95.9651,-9.0309,0	1/1:50:2,48:2:72:48:1724:-148.355,-8.21478,0	1/1:77:3,74:3:108:74:2645:-226.15,-13.1041,0	1/1:19:0,19:0:0:19:680:-61.4442,-5.71957,0	1/1:29:0,29:0:0:29:1035:-93.1629,-8.72987,0	1/1:30:0,30:0:0:30:1067:-96.2938,-9.0309,0	0/1:19:15,4:15:532:4:144:-7.58445,0,-42.4935	1/1:44:2,42:2:72:42:1495:-127.874,-6.4086,0	1/1:24:0,24:0:0:24:864:-77.0984,-7.22472,0	1/1:43:0,43:0:0:43:1515:-136.453,-12.9443,0	1/1:79:0,79:0:0:79:2821:-253.408,-23.7814,0	0/1:80:46,34:46:1639:34:1220:-85.6041,0,-123.716	1/1:17:0,17:0:0:17:612:-55.3189,-5.11751,0	0/1:9:7,2:7:244:2:72:-4.12041,0,-19.5902	1/1:60:0,60:0:0:60:2156:-193.659,-18.0618,0	1/1:33:1,32:1:36:32:1148:-99.8236,-6.33572,0	1/1:65:0,65:0:0:65:2311:-207.105,-19.567,0	1/1:60:0,60:0:0:60:2145:-192.918,-18.0618,0	1/1:47:0,47:0:0:47:1651:-148.666,-14.1484,0	0/1:29:13,16:13:425:16:572:-43.0464,0,-29.832	1/1:83:0,83:0:0:83:2947:-265.094,-24.9855,0	1/1:23:0,23:0:0:23:807:-72.8773,-6.92369,0	1/1:53:1,52:1:36:52:1834:-161.314,-12.3563,0	1/1:47:0,47:0:0:47:1677:-150.949,-14.1484,0	1/1:20:0,20:0:0:20:716:-64.5539,-6.0206,0	0/1:71:32,39:32:1123:39:1378:-102.36,0,-79.9958	0/1:53:38,15:38:1351:15:532:-32.2146,0,-105.935	1/1:41:1,40:1:36:40:1440:-126.036,-8.74396,0	1/1:59:1,58:1:36:58:2080:-183.164,-14.1625,0
chr04	25626103	.	T	C	68111.1	PASS	AB=0.391885;ABP=200.686;AC=144;AF=0.774194;AN=186;AO=3246;CIGAR=1X;DP=4459;DPB=4459;DPRA=9.87556;EPP=7051.61;EPPR=2632.66;GTI=1;LEN=1;MEANALT=1.02222;MQM=55.02;MQMR=59.9488;NS=93;NUMALT=1;ODDS=0.215093;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115961;QR=43148;RO=1211;RPL=3246;RPP=7051.61;RPPR=2632.66;RPR=0;RUN=1;SAF=0;SAP=7051.61;SAR=3246;SRF=0;SRP=2632.66;SRR=1211;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:28,8:28:992:8:288:-15.2994,0,-78.7573	1/1:52:0,52:0:0:52:1852:-166.772,-15.6536,0	1/1:42:0,42:0:0:42:1508:-135.774,-12.6433,0	1/1:77:0,77:0:0:77:2736:-246.219,-23.1793,0	1/1:27:0,27:0:0:27:972:-87.3557,-8.12781,0	1/1:20:0,20:0:0:20:720:-65.0617,-6.0206,0	0/1:45:26,19:26:928:19:680:-47.8531,0,-70.2919	0/1:43:29,14:29:1015:14:500:-31.9977,0,-78.7166	1/1:20:0,20:0:0:20:704:-63.6255,-6.0206,0	1/1:26:0,26:0:0:26:932:-84.137,-7.82678,0	0/1:21:11,10:11:396:10:351:-25.4989,0,-29.6611	1/1:66:0,66:0:0:66:2368:-212.69,-19.868,0	1/1:52:0,52:0:0:52:1852:-166.693,-15.6536,0	1/1:41:0,41:0:0:41:1468:-132.234,-12.3422,0	1/1:40:0,40:0:0:40:1440:-129.627,-12.0412,0	0/1:50:26,24:26:928:24:864:-62.9038,0,-68.7868	1/1:27:0,27:0:0:27:972:-87.6668,-8.12781,0	0/1:18:6,12:6:216:12:432:-33.6588,0,-14.372	0/1:16:5,11:5:180:11:379:-29.5959,0,-11.7356	0/1:124:74,50:74:2603:50:1792:-124.117,0,-197.187	0/1:57:30,27:30:1076:27:964:-69.7956,0,-79.9941	1/1:99:1,98:1:36:98:3520:-313.307,-26.2037,0	0/1:57:27,30:27:972:30:1072:-79.4647,0,-70.6392	0/1:33:17,16:17:600:16:572:-41.8082,0,-44.3952	1/1:80:0,80:0:0:80:2857:-256.83,-24.0824,0	0/1:121:83,38:83:2960:38:1364:-86.5978,0,-230.209	0/1:138:72,66:72:2553:66:2343:-168.843,0,-188.207	0/1:33:17,16:17:608:16:564:-41.0238,0,-45.118	1/1:150:0,149:0:0:149:5324:-478.686,-44.8535,0	0/1:114:72,42:72:2584:42:1512:-101.592,0,-198.49	1/1:28:0,28:0:0:28:997:-89.9729,-8.42884,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:5:1,4:1:36:4:139:-11.3027,0,-2.09312	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-22.9947,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	1/1:153:0,153:0:0:153:5456:-490.466,-46.0576,0	1/1:46:1,45:1:36:45:1604:-140.571,-10.2491,0	1/1:31:1,30:1:32:30:1080:-94.0963,-6.13262,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:58:34,24:34:1216:24:852:-59.4382,0,-92.2868	0/1:22:8,14:8:288:14:485:-37.102,0,-19.6447	0/1:113:84,29:84:2970:29:1028:-58.4676,0,-233.515	0/1:34:16,18:16:576:18:624:-45.4185,0,-41.94	1/1:44:0,44:0:0:44:1557:-139.244,-13.2453,0	1/1:34:0,34:0:0:34:1220:-109.963,-10.235,0	1/1:27:0,27:0:0:27:945:-85.2543,-8.12781,0	0/1:87:58,29:58:2076:29:1040:-67.4588,0,-160.919	0/1:50:37,13:37:1324:13:460:-26.6561,0,-104.411	1/1:58:1,57:1:36:57:2044:-180.324,-13.8615,0	1/1:38:0,38:0:0:38:1364:-123.02,-11.4391,0	1/1:3:0,3:0:0:3:99:-9.18761,-0.90309,0	1/1:57:0,57:0:0:57:2040:-183.683,-17.1587,0	0/1:64:46,18:46:1628:18:648:-39.2537,0,-127.543	1/1:2:0,2:0:0:2:72:-6.82968,-0.60206,0	0/1:75:44,31:44:1580:31:1112:-77.5562,0,-119.914	0/1:20:14,6:14:496:6:216:-13.7556,0,-38.9537	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:8,3:8:288:3:108:-6.75954,0,-22.9561	0/1:58:42,16:42:1504:16:576:-34.6413,0,-118.181	1/1:92:0,92:0:0:92:3292:-296.273,-27.6948,0	1/1:6:0,6:0:0:6:212:-19.3411,-1.80618,0	0/1:74:45,29:45:1612:29:1032:-70.8905,0,-123.093	0/1:79:54,25:54:1921:25:896:-56.8962,0,-149.384	0/1:32:19,13:19:676:13:464:-32.4146,0,-51.535	1/1:32:0,32:0:0:32:1144:-103.068,-9.63296,0	1/1:51:2,49:2:72:49:1740:-149.868,-8.51581,0	1/1:78:3,75:3:104:75:2672:-229.292,-13.7775,0	1/1:19:0,19:0:0:19:680:-61.4442,-5.71957,0	1/1:32:0,32:0:0:32:1115:-100.394,-9.63296,0	1/1:31:0,31:0:0:31:1108:-99.9824,-9.33193,0	0/1:21:17,4:17:612:4:144:-6.98239,0,-49.0872	1/1:45:2,43:2:72:43:1540:-131.918,-6.70963,0	1/1:25:0,25:0:0:25:889:-79.6802,-7.52575,0	1/1:45:0,45:0:0:45:1600:-143.457,-13.5464,0	1/1:80:0,80:0:0:80:2868:-257.682,-24.0824,0	0/1:76:44,32:44:1561:32:1148:-80.3379,0,-117.901	1/1:18:0,18:0:0:18:640:-57.8355,-5.41854,0	0/1:9:7,2:7:237:2:72:-4.12041,0,-18.9498	1/1:62:0,62:0:0:62:2224:-199.77,-18.6639,0	1/1:33:1,32:1:36:32:1129:-98.2116,-6.33572,0	1/1:66:0,65:0:0:65:2328:-207.729,-19.567,0	1/1:60:0,60:0:0:60:2160:-194.258,-18.0618,0	1/1:49:0,49:0:0:49:1760:-158.462,-14.7505,0	0/1:29:13,16:13:464:16:568:-42.6863,0,-33.3676	1/1:83:0,83:0:0:83:2972:-267.341,-24.9855,0	1/1:24:0,24:0:0:24:864:-77.9993,-7.22472,0	1/1:53:0,53:0:0:53:1896:-170.311,-15.9546,0	1/1:46:0,46:0:0:46:1652:-148.606,-13.8474,0	1/1:20:0,20:0:0:20:712:-64.1948,-6.0206,0	0/1:71:32,39:32:1148:39:1396:-103.65,0,-82.2485	0/1:53:38,15:38:1364:15:540:-32.9352,0,-107.106	1/1:41:0,41:0:0:41:1468:-132.156,-12.3422,0	1/1:58:0,58:0:0:58:2080:-187.139,-17.4597,0
chr04	25660431	.	TTTCT	CTTCT	204974	PASS	AB=0.494171;ABP=4.45336;AC=149;AF=0.792553;AN=188;AO=9588;CIGAR=1X4M;DP=12110;DPB=12111.2;DPRA=0;EPP=20823.1;EPPR=5390.43;GTI=1;LEN=1;MEANALT=1.37234;MQM=59.9423;MQMR=59.9686;NS=94;NUMALT=1;ODDS=0.442477;PAIRED=0;PAIREDR=0;PAO=1;PQA=28.5;PQR=72;PRO=2;QA=341547;QR=87945;RO=2481;RPL=9588;RPP=20823.1;RPPR=5390.43;RPR=0;RUN=1;SAF=0;SAP=20823.1;SAR=9588;SRF=0;SRP=5390.43;SRR=2481;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:31,16:31:1094:16:576:-38.0266,0,-84.6216	1/1:182:3,178:3:106:178:6351:-561.797,-44.9256,0	1/1:255:1,253:1:33:253:8996:-805.945,-73.5074,0	1/1:284:3,281:3:108:281:10037:-893.128,-75.4174,0	1/1:84:0,83:0:0:83:2961:-266.36,-24.9855,0	1/1:69:0,68:0:0:68:2395:-215.443,-20.47,0	0/1:200:118,82:118:4208:82:2903:-201.296,0,-318.697	0/1:139:58,81:58:2058:81:2879:-217.074,0,-142.458	1/1:133:1,132:1:36:132:4672:-417.04,-36.4387,0	1/1:62:0,62:0:0:62:2198:-198.081,-18.6639,0	0/1:92:40,51:40:1414:51:1802:-134.687,0,-99.8037	1/1:123:0,122:0:0:122:4369:-392.961,-36.7257,0	1/1:106:0,105:0:0:105:3746:-337.117,-31.6082,0	1/1:112:0,112:0:0:112:4008:-360.909,-33.7154,0	1/1:99:0,98:0:0:98:3494:-314.308,-29.5009,0	0/1:76:34,42:34:1218:42:1512:-113.496,0,-87.0487	1/1:116:0,116:0:0:116:4161:-374.67,-34.9195,0	0/1:68:24,44:24:858:44:1569:-121.03,0,-57.0714	0/1:69:20,49:20:695:49:1764:-138.273,0,-42.1009	0/1:260:161,98:161:5718:98:3490:-235.982,0,-436.417	0/1:218:96,120:96:3398:120:4263:-318.408,0,-240.656	1/1:126:0,126:0:0:126:4475:-402.918,-37.9298,0	0/1:103:48,55:48:1707:55:1943:-144.137,0,-122.91	0/1:159:92,67:92:3282:67:2408:-169.112,0,-247.737	1/1:118:0,117:0:0:117:4170:-375.129,-35.2205,0	0/1:350:176,173:176:6219:173:6121:-445.566,0,-454.389	0/1:373:196,175:196:6970:175:6205:-446.523,0,-515.349	0/1:58:23,35:23:821:35:1252:-95.5253,0,-56.753	1/1:369:2,367:2:72:367:13098:-1171.78,-104.243,0	0/1:162:80,82:80:2820:82:2932:-215.347,0,-205.275	0/1:172:96,76:96:3396:76:2675:-189.215,0,-254.081	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:12:7,5:7:249:5:180:-12.9397,0,-19.1431	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:284:0,283:0:0:283:10142:-912.344,-85.1915,0	1/1:152:0,152:0:0:152:5419:-487.837,-45.7566,0	1/1:105:0,104:0:0:104:3729:-335.449,-31.3071,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:212:104,104:104:3692:104:3713:-271.395,0,-269.512	0/1:43:28,15:28:1000:15:536:-35.6305,0,-77.3711	0/1:209:91,117:91:3206:117:4179:-313.204,0,-225.893	0/1:106:51,55:51:1811:55:1972:-145.846,0,-131.363	1/1:76:0,76:0:0:76:2696:-242.612,-22.8783,0	1/1:136:2,134:2:72:134:4782:-423.621,-34.1034,0	1/1:148:1,147:1:36:147:5269:-470.739,-40.9542,0	0/1:138:69,69:69:2427:69:2446:-178.431,0,-176.727	0/1:134:74,60:74:2617:60:2137:-152.258,0,-195.442	1/1:243:0,243:0:0:243:8654:-778.848,-73.1503,0	1/1:183:1,182:1:36:182:6479:-579.594,-51.4902,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:163:0,163:0:0:163:5776:-519.955,-49.0679,0	0/1:64:37,27:37:1318:27:953:-66.8174,0,-99.6559	1/1:26:0,26:0:0:26:917:-82.8433,-7.82678,0	0/1:177:97,79:97:3441:79:2836:-202.137,0,-256.564	0/1:72:37,35:37:1315:35:1260:-92.0309,0,-96.9771	0/1:4:1,3:1:36:3:93:-7.47065,0,-2.39415	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	0/1:113:59,52:59:2096:52:1868:-134.692,0,-155.204	1/1:148:4,144:4:143:144:5126:-448.255,-31.331,0	1/1:21:0,17:0:0:17:600:-53.9746,-5.11751,0	0/1:191:78,113:78:2769:113:4023:-304.758,0,-191.957	0/1:273:126,147:126:4454:147:5252:-390.634,0,-318.854	0/1:57:26,31:26:926:31:1108:-82.8719,0,-66.4994	1/1:133:1,132:1:36:132:4682:-417.942,-36.4387,0	1/1:237:0,234:0:0:234:8296:-746.292,-70.441,0	1/1:110:0,110:0:0:110:3914:-352.452,-33.1133,0	1/1:59:0,59:0:0:59:2109:-190.077,-17.7608,0	1/1:143:0,143:0:0:143:5079:-457.253,-43.0473,0	1/1:130:0,129:0:0:129:4595:-413.351,-38.8329,0	0/1:35:17,18:17:598:18:644:-47.7545,0,-43.6124	1/1:133:0,133:0:0:133:4750:-427.655,-40.037,0	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	1/1:304:0,303:0:0:303:10695:-962.246,-91.2121,0	1/1:209:0,208:0:0:208:7438:-669.122,-62.6142,0	0/1:131:70,61:70:2452:61:2154:-154.689,0,-181.501	1/1:105:0,105:0:0:105:3768:-338.9,-31.6082,0	0/1:16:9,7:9:321:7:222:-15.4727,0,-24.4168	1/1:139:2,137:2:72:137:4871:-431.69,-35.0064,0	1/1:118:0,118:0:0:118:4221:-380.069,-35.5215,0	1/1:312:0,310:0:0:310:11063:-995.154,-93.3193,0	1/1:153:0,152:0:0:152:5422:-487.742,-45.7566,0	1/1:99:0,99:0:0:99:3537:-318.538,-29.802,0	0/1:132:61,71:61:2155:71:2544:-189.317,0,-154.481	1/1:167:3,163:3:108:163:5815:-513.356,-40.2556,0	1/1:66:0,66:0:0:66:2357:-212.384,-19.868,0	1/1:96:0,96:0:0:96:3398:-306.032,-28.8989,0	1/1:102:0,102:0:0:102:3626:-326.544,-30.7051,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	0/1:114:61,53:61:2161:53:1853:-132.727,0,-160.44	0/1:86:51,33:51:1807:33:1165:-79.5091,0,-137.265	1/1:128:1,127:1:36:127:4508:-402.28,-34.9336,0	1/1:163:0,163:0:0:163:5849:-526.518,-49.0679,0
chr04	25666416	.	C	A	14527	PASS	AB=0.48628;ABP=6.22779;AC=41;AF=0.218085;AN=188;AO=967;CIGAR=1X;DP=5053;DPB=5053;DPRA=1.02651;EPP=2102.82;EPPR=8869.13;GTI=2;LEN=1;MEANALT=1;MQM=40.5688;MQMR=53.6402;NS=94;NUMALT=1;ODDS=5.29605;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34584;QR=146145;RO=4083;RPL=0;RPP=2102.82;RPPR=8869.13;RPR=967;RUN=1;SAF=967;SAP=2102.82;SAR=0;SRF=4083;SRP=8869.13;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:23,26:23:824:26:936:-63.2797,0,-59.0733	0/0:66:66,0:66:2360:0:0:0,-19.868,-211.608	0/0:99:99,0:99:3556:0:0:0,-29.802,-318.143	0/0:114:113,0:113:4037:0:0:0,-34.0164,-362.389	0/0:48:48,0:48:1720:0:0:0,-14.4494,-153.84	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.1987	0/1:38:18,20:18:644:20:705:-50.5019,0,-46.5823	0/1:63:36,27:36:1292:27:957:-62.5212,0,-96.9251	0/0:72:72,0:72:2584:0:0:0,-21.6742,-231.526	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.113	0/1:27:16,11:16:576:11:396:-26.1676,0,-43.8991	0/0:60:60,0:60:2156:0:0:0,-18.0618,-192.882	0/0:56:56,0:56:2016:0:0:0,-16.8577,-179.737	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.597	0/0:60:60,0:60:2144:0:0:0,-18.0618,-192.106	0/1:36:20,16:20:720:16:576:-39.253,0,-53.9729	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.0697	0/1:18:11,7:11:387:7:252:-16.2621,0,-29.6585	0/1:25:11,14:11:396:14:504:-35.4968,0,-28.3665	0/1:88:45,43:45:1616:43:1510:-105.023,0,-118.96	0/1:91:49,42:49:1737:42:1504:-102.402,0,-128.72	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.692	0/1:69:25,44:25:892:44:1580:-116.552,0,-59.3994	0/1:37:14,23:14:504:23:828:-60.6173,0,-34.2436	0/0:56:56,0:56:1997:0:0:0,-16.8577,-179.428	0/1:101:55,46:55:1964:46:1652:-115.075,0,-146.345	0/1:101:70,31:70:2486:31:1116:-64.9336,0,-191.94	0/1:28:11,17:11:396:17:597:-43.1099,0,-27.2507	0/0:145:144,1:144:5142:1:36:0,-40.1132,-457.87	0/1:70:32,38:32:1144:38:1368:-94.9987,0,-81.9231	0/1:62:26,36:26:936:36:1296:-94.3061,0,-65.0266	0/1:11:4,7:4:140:7:252:-18.7974,0,-9.57589	0/1:11:9,2:9:324:2:57:-1.96032,0,-26.1527	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3283	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9711	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.8693	0/0:137:137,0:137:4916:0:0:0,-41.2411,-442.134	0/0:92:92,0:92:3296:0:0:0,-27.6948,-295.555	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.5498	1/1:3:0,3:0:0:3:108:-9.67257,-0.90309,0	0/1:59:27,32:27:972:32:1152:-81.3649,0,-69.7873	0/1:20:9,11:9:320:11:396:-27.8105,0,-22.83	0/1:67:46,21:46:1637:21:756:-45.4663,0,-126.615	0/1:32:20,12:20:716:12:432:-28.5027,0,-54.5899	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.587	0/0:88:88,0:88:3152:0:0:0,-26.4906,-282.503	0/0:89:88,1:88:3148:1:36:0,-23.4041,-277.805	0/1:99:52,47:52:1864:47:1662:-115.782,0,-137.631	0/1:36:17,19:17:608:19:680:-48.8629,0,-44.1764	0/0:52:52,0:52:1868:0:0:0,-15.6536,-167.93	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.137	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6629	0/0:88:88,0:88:3152:0:0:0,-26.4906,-281.687	0/1:40:24,16:24:852:16:572:-37.6778,0,-64.4417	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.0731	0/1:91:43,48:43:1536:48:1714:-119.577,0,-110.781	0/1:27:16,11:16:576:11:396:-26.8554,0,-43.9253	0/1:8:2,6:2:72:6:216:-17.0404,0,-4.42657	0/1:10:5,5:5:180:5:180:-13.2559,0,-13.5371	0/1:48:26,22:26:936:22:792:-54.0535,0,-69.2842	0/0:82:82,0:82:2940:0:0:0,-24.6845,-263.938	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.3999	0/1:129:58,71:58:2069:71:2552:-186.688,0,-147.447	0/1:70:31,39:31:1116:39:1400:-100.623,0,-79.4276	0/1:54:30,24:30:1068:24:845:-57.1289,0,-79.5819	0/0:40:39,1:39:1400:1:36:0,-8.5385,-122.526	0/0:126:125,1:125:4469:1:36:0,-34.4271,-398.173	0/0:90:90,0:90:3194:0:0:0,-27.0927,-285.323	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.6735	0/0:17:17,0:17:612:0:0:0,-5.11751,-54.8991	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.26	0/1:22:9,13:9:320:13:449:-32.9357,0,-22.4976	0/0:66:66,0:66:2356:0:0:0,-19.868,-211.17	0/0:51:51,0:51:1836:0:0:0,-15.3525,-163.061	0/0:104:103,0:103:3688:0:0:0,-31.0061,-330.888	0/0:74:74,0:74:2660:0:0:0,-22.2762,-238.987	0/1:71:48,23:48:1701:23:828:-48.1585,0,-130.867	0/0:33:33,0:33:1161:0:0:0,-9.93399,-104.146	0/1:11:3,8:3:108:8:288:-20.8237,0,-6.73851	0/0:63:62,0:62:2224:0:0:0,-18.6639,-199.166	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.029	0/0:95:95,0:95:3416:0:0:0,-28.5978,-306.92	0/0:66:66,0:66:2360:0:0:0,-19.868,-211.564	0/0:41:41,0:41:1472:0:0:0,-12.3422,-131.581	0/1:14:6,8:6:216:8:288:-21.3113,0,-15.4743	0/0:81:78,3:78:2800:3:104:0,-14.897,-241.781	0/0:19:19,0:19:684:0:0:0,-5.71957,-60.6137	0/0:64:64,0:64:2296:0:0:0,-19.2659,-205.375	0/0:45:45,0:45:1616:0:0:0,-13.5463,-144.811	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.5316	0/1:94:49,45:49:1760:45:1608:-110.258,0,-129.035	0/1:41:15,26:15:531:26:936:-69.3385,0,-35.6621	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.207	0/0:62:62,0:62:2228:0:0:0,-18.6639,-199.784
chr04	25677799	.	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chr04	25677809	.	T	C	163560	PASS	AB=0.492578;ABP=4.42864;AC=146;AF=0.784946;AN=186;AO=6111;CIGAR=1X;DP=7640;DPB=7640;DPRA=83.0326;EPP=13272.9;EPPR=3310.16;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.6333;MQMR=59.9993;NS=93;NUMALT=1;ODDS=2.64477;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215452;QR=54490;RO=1523;RPL=2242;RPP=943.637;RPPR=313.959;RPR=3869;RUN=1;SAF=2242;SAP=943.637;SAR=3869;SRF=528;SRP=313.959;SRR=995;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:25,27:25:900:27:972:-72.1443,0,-65.6675	1/1:104:0,104:0:0:104:3668:-330.289,-31.3071,0	1/1:108:0,108:0:0:108:3860:-347.513,-32.5112,0	1/1:129:2,127:2:72:127:4521:-400.194,-31.9961,0	1/1:45:0,45:0:0:45:1603:-144.552,-13.5464,0	1/1:47:0,47:0:0:47:1671:-150.667,-14.1484,0	0/1:85:45,40:45:1616:40:1436:-103.949,0,-120.142	0/1:132:71,61:71:2556:61:2109:-150.07,0,-190.554	1/1:72:1,71:1:36:71:2492:-220.793,-18.0759,0	1/1:63:0,63:0:0:63:2249:-202.655,-18.9649,0	0/1:87:41,46:41:1468:46:1629:-120.692,0,-106.226	1/1:150:1,149:1:36:149:5199:-464.3,-41.5562,0	1/1:114:0,114:0:0:114:4004:-360.293,-34.3174,0	1/1:91:0,91:0:0:91:3211:-289.197,-27.3937,0	1/1:102:1,101:1:36:101:3564:-317.351,-27.1068,0	0/1:83:37,46:37:1304:46:1594:-118.743,0,-92.6731	1/1:78:0,78:0:0:78:2750:-247.705,-23.4803,0	0/1:55:24,31:24:864:31:1091:-81.9221,0,-61.5259	0/1:52:26,26:26:932:26:928:-68.1847,0,-68.5453	0/1:119:58,61:58:2076:61:2155:-158.385,0,-151.288	0/1:160:95,64:95:3408:64:2252:-154.804,0,-258.829	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:64:34,30:34:1211:30:1052:-75.6497,0,-90.0296	0/1:89:47,42:47:1680:42:1489:-107.494,0,-124.695	1/1:38:0,38:0:0:38:1347:-121.529,-11.4391,0	0/1:137:57,80:57:2044:80:2833:-213.967,0,-142.991	0/1:143:71,72:71:2548:72:2568:-188.318,0,-186.523	0/1:47:28,19:28:1008:19:645:-44.2136,0,-76.8879	1/1:150:0,149:0:0:149:5307:-477.369,-44.8535,0	0/1:84:40,44:40:1424:44:1561:-115.246,0,-103.171	0/1:100:56,44:56:2007:44:1580:-112.389,0,-150.8	0/1:8:5,3:5:180:3:104:-7.2936,0,-14.1438	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:276:0,276:0:0:276:9688:-871.87,-83.0843,0	1/1:79:1,78:1:36:78:2716:-241.084,-20.1831,0	1/1:57:0,57:0:0:57:1999:-180.146,-17.1587,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:75:37,38:37:1308:38:1309:-95.5064,0,-95.4415	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/1:71:30,41:30:1080:41:1439:-108.429,0,-76.1401	0/1:99:50,49:50:1787:49:1714:-124.73,0,-131.31	1/1:94:0,94:0:0:94:3244:-292.172,-28.2968,0	1/1:62:1,61:1:36:61:2152:-190.102,-15.0656,0	1/1:89:0,89:0:0:89:3145:-283.198,-26.7917,0	0/1:110:69,41:69:2444:41:1433:-96.1437,0,-187.1	0/1:74:38,36:38:1368:36:1274:-92.6853,0,-101.145	1/1:91:0,90:0:0:90:3189:-287.02,-27.0927,0	1/1:48:0,48:0:0:48:1690:-152.344,-14.4494,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:98:2,96:2:72:96:3360:-295.687,-22.6642,0	0/1:36:13,23:13:468:23:809:-62.291,0,-31.6226	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	0/1:95:39,56:39:1392:56:1995:-151.197,0,-96.9812	0/1:36:20,16:20:697:16:572:-40.974,0,-52.2136	.:.:.:.:.:.:.:.	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:97:55,42:55:1968:42:1489:-105.102,0,-148.195	1/1:129:1,128:1:36:128:4520:-403.36,-35.2346,0	1/1:9:0,9:0:0:9:320:-29.1285,-2.70927,0	0/1:68:31,37:31:1103:37:1316:-98.2685,0,-79.1098	0/1:144:73,71:73:2605:71:2519:-183.614,0,-191.348	0/1:73:28,45:28:1004:45:1596:-121.879,0,-68.7007	1/1:46:0,46:0:0:46:1616:-145.726,-13.8474,0	1/1:130:1,129:1:36:129:4539:-405.036,-35.5356,0	1/1:85:2,83:2:72:83:2924:-256.4,-18.7508,0	1/1:67:0,67:0:0:67:2356:-212.293,-20.169,0	1/1:52:0,52:0:0:52:1826:-164.557,-15.6536,0	1/1:104:0,104:0:0:104:3650:-328.629,-31.3071,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	1/1:81:0,81:0:0:81:2875:-258.96,-24.3834,0	1/1:114:0,114:0:0:114:4025:-362.189,-34.3174,0	1/1:163:0,163:0:0:163:5712:-514.182,-49.0679,0	1/1:125:0,125:0:0:125:4441:-399.851,-37.6288,0	0/1:94:46,48:46:1648:48:1694:-124.434,0,-120.312	1/1:127:2,125:2:72:125:4386:-388.018,-31.3941,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:59:2,57:2:72:57:2044:-177.393,-10.924,0	1/1:85:0,85:0:0:85:2978:-268.181,-25.5876,0	1/1:133:0,132:0:0:132:4682:-421.239,-39.736,0	1/1:121:0,121:0:0:121:4257:-383.299,-36.4246,0	1/1:112:0,112:0:0:112:3959:-356.483,-33.7154,0	0/1:108:47,61:47:1680:61:2161:-162.24,0,-118.976	1/1:204:0,203:0:0:203:7114:-639.929,-61.1091,0	1/1:48:0,48:0:0:48:1690:-152.361,-14.4494,0	1/1:88:0,88:0:0:88:3084:-277.76,-26.4906,0	1/1:114:0,114:0:0:114:3980:-358.365,-34.3174,0	1/1:49:0,49:0:0:49:1731:-156.057,-14.7505,0	0/1:123:65,57:65:2332:57:2006:-142.945,0,-173.054	0/1:111:76,35:76:2728:35:1260:-80.2912,0,-212.348	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:183:3,180:3:104:180:6323:-559.229,-45.3857,0
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chr04	25709378	.	T	C	109738	PASS	AB=0.419666;ABP=194.548;AC=146;AF=0.776596;AN=188;AO=5246;CIGAR=1X;DP=7242;DPB=7242;DPRA=38.9247;EPP=11394.6;EPPR=4317.74;GTI=6;LEN=1;MEANALT=1.01075;MQM=59.9821;MQMR=59.9835;NS=94;NUMALT=1;ODDS=0.728163;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186961;QR=71355;RO=1995;RPL=0;RPP=11394.6;RPPR=4317.74;RPR=5246;RUN=1;SAF=0;SAP=11394.6;SAR=5246;SRF=0;SRP=4335.1;SRR=1995;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:17,7:17:597:7:252:-15.8042,0,-46.8314	1/1:99:0,99:0:0:99:3514:-316.469,-29.802,0	1/1:71:0,71:0:0:71:2535:-228.401,-21.3731,0	1/1:142:0,142:0:0:142:5064:-455.906,-42.7463,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:130:85,45:85:3040:45:1616:-106.592,0,-234.696	0/1:134:76,58:76:2713:58:2076:-146.772,0,-204.074	1/1:75:1,74:1:36:74:2635:-233.796,-18.979,0	1/1:96:0,96:0:0:96:3418:-307.834,-28.8989,0	0/1:39:20,19:20:720:19:676:-49.4278,0,-53.3886	1/1:69:0,69:0:0:69:2448:-220.502,-20.7711,0	1/1:60:0,60:0:0:60:2134:-192.327,-18.0618,0	1/1:38:0,38:0:0:38:1332:-120.177,-11.4391,0	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	0/1:57:34,23:34:1224:23:824:-57.3246,0,-93.3083	1/1:40:0,40:0:0:40:1414:-127.556,-12.0412,0	0/1:36:17,19:17:608:19:675:-50.2399,0,-44.2149	0/1:26:9,17:9:324:17:608:-47.2252,0,-21.6791	0/1:143:88,55:88:3118:55:1972:-134.708,0,-237.798	0/1:125:74,50:74:2660:50:1787:-123.571,0,-202.106	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:59:35,24:35:1260:24:859:-59.871,0,-95.9447	0/1:157:111,46:111:3972:46:1622:-99.0044,0,-310.409	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:303:166,137:166:5952:137:4859:-346.253,0,-444.573	0/1:225:140,85:140:5015:85:3039:-206.007,0,-383.719	0/1:35:16,19:16:576:19:684:-51.3543,0,-41.6389	1/1:169:1,168:1:36:168:5993:-535.879,-47.2758,0	0/1:140:77,63:77:2718:63:2248:-160.439,0,-202.718	0/1:125:77,48:77:2768:48:1706:-116.196,0,-211.732	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:4:0,4:0:0:4:144:-13.2845,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:224:0,224:0:0:224:7974:-717.685,-67.4307,0	1/1:155:1,154:1:36:154:5523:-493.595,-43.0614,0	1/1:42:0,42:0:0:42:1475:-133.041,-12.6433,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:141:80,61:80:2856:61:2181:-154.11,0,-214.833	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:81:46,35:46:1636:35:1233:-86.8887,0,-123.145	0/1:86:34,52:34:1224:52:1840:-139.989,0,-84.5785	1/1:58:0,58:0:0:58:2058:-185.49,-17.4597,0	1/1:72:0,72:0:0:72:2571:-231.639,-21.6742,0	1/1:57:0,57:0:0:57:2035:-183.422,-17.1587,0	0/1:166:110,56:110:3952:56:2008:-131.022,0,-305.899	0/1:131:82,49:82:2944:49:1747:-118.079,0,-225.756	1/1:94:0,94:0:0:94:3359:-302.526,-28.2968,0	1/1:87:0,87:0:0:87:3096:-278.868,-26.1896,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:76:0,76:0:0:76:2711:-244.234,-22.8783,0	0/1:19:3,16:3:108:16:565:-45.4607,0,-4.3556	1/1:14:0,14:0:0:14:483:-43.7965,-4.21442,0	0/1:133:75,58:75:2684:58:2072:-146.714,0,-201.768	0/1:47:35,12:35:1252:12:432:-25.0728,0,-98.8367	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:14:2,12:2:72:12:419:-33.8283,0,-2.6223	0/1:74:43,31:43:1540:31:1112:-78.1151,0,-116.612	1/1:92:0,92:0:0:92:3291:-296.409,-27.6948,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:224:124,100:124:4420:100:3587:-255.605,0,-330.543	0/1:188:109,79:109:3916:79:2809:-196.457,0,-296.033	0/1:41:24,17:24:841:17:604:-42.3484,0,-63.6641	1/1:51:0,51:0:0:51:1818:-163.9,-15.3525,0	1/1:116:5,111:5:180:111:3951:-339.229,-18.3674,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:12:0,12:0:0:12:419:-38.0427,-3.61236,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:81:0,81:0:0:81:2878:-259.257,-24.3834,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:80:0,80:0:0:80:2849:-256.648,-24.0824,0	1/1:36:0,36:0:0:36:1275:-115.052,-10.8371,0	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	1/1:134:0,134:0:0:134:4799:-432.065,-40.338,0	0/1:32:18,14:18:633:14:504:-36.0651,0,-47.6621	1/1:118:1,117:1:36:117:4182:-372.963,-31.9233,0	0/1:19:16,3:16:576:3:108:-4.3556,0,-46.4554	1/1:93:1,92:1:36:92:3277:-291.551,-24.3975,0	1/1:92:0,92:0:0:92:3279:-295.33,-27.6948,0	1/1:165:0,165:0:0:165:5901:-531.2,-49.67,0	1/1:102:0,102:0:0:102:3611:-325.179,-30.7051,0	1/1:49:0,49:0:0:49:1751:-157.873,-14.7505,0	0/1:76:37,39:37:1332:39:1376:-101.259,0,-97.3041	1/1:132:0,132:0:0:132:4714:-424.419,-39.736,0	1/1:41:0,41:0:0:41:1464:-132.054,-12.3422,0	1/1:91:0,91:0:0:91:3232:-291.101,-27.3937,0	1/1:56:1,55:1:36:55:1929:-170.286,-13.2594,0	1/1:20:0,20:0:0:20:701:-63.4117,-6.0206,0	0/1:55:33,22:33:1160:22:792:-55.049,0,-88.1473	0/1:70:44,26:44:1580:26:932:-63.1268,0,-121.419	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0	1/1:85:0,85:0:0:85:2997:-269.96,-25.5876,0
chr04	25709408	.	T	G	35472.1	PASS	AB=0.580925;ABP=199.824;AC=41;AF=0.218085;AN=188;AO=2023;CIGAR=1X;DP=7367;DPB=7367;DPRA=1.33799;EPP=4395.9;EPPR=11600.8;GTI=7;LEN=1;MEANALT=1.02128;MQM=59.9867;MQMR=59.9813;NS=94;NUMALT=1;ODDS=0.698882;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72382;QR=191421;RO=5341;RPL=2023;RPP=4395.9;RPPR=11600.8;RPR=0;RUN=1;SAF=0;SAP=4395.9;SAR=2023;SRF=0;SRP=11600.8;SRR=5341;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:8,18:8:288:18:644:-50.4638,0,-18.4406	0/0:99:98,0:98:3524:0:0:0,-29.5009,-317	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:147:147,0:147:5292:0:0:0,-44.2514,-476.412	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:126:44,82:44:1580:82:2932:-226.185,0,-104.562	0/1:141:64,77:64:2300:77:2764:-206.556,0,-164.816	0/0:78:77,1:77:2753:1:36:0,-19.8821,-244.41	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.483	0/1:38:19,19:19:684:19:680:-50.09,0,-50.4512	0/0:69:69,0:69:2465:0:0:0,-20.7711,-221.475	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:56:22,33:22:788:33:1175:-89.1406,0,-54.3284	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:37:19,18:19:665:18:648:-47.5138,0,-49.0347	0/1:26:17,9:17:608:9:324:-21.6791,0,-47.2252	0/1:144:58,86:58:2084:86:3084:-234.439,0,-144.482	0/1:128:51,77:51:1828:77:2748:-209.031,0,-126.265	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:60:24,36:24:864:36:1292:-98.522,0,-60.0208	0/1:162:48,114:48:1724:114:4049:-315.832,0,-106.679	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/1:306:138,168:138:4922:168:6020:-449.788,0,-351.013	0/1:225:86,139:86:3065:139:4982:-380.784,0,-208.346	0/1:36:19,17:19:684:17:612:-44.5764,0,-51.0532	0/0:169:168,1:168:6009:1:36:0,-47.2758,-537.316	0/1:142:63,79:63:2256:79:2840:-213.091,0,-160.557	0/1:126:50,76:50:1784:76:2723:-207.383,0,-122.913	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2845	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:231:231,0:231:8300:0:0:0,-69.5379,-747.004	0/0:161:160,1:160:5714:1:36:0,-44.8676,-510.777	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:145:63,82:63:2249:82:2909:-218.396,0,-159.022	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:85:37,48:37:1328:48:1708:-128.418,0,-94.2347	0/1:86:52,34:52:1872:34:1220:-84.2182,0,-142.871	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.345	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:169:57,112:57:2048:112:4008:-310.035,0,-133.717	0/1:136:50,86:50:1781:86:3065:-235.135,0,-119.631	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:77:77,0:77:2742:0:0:0,-23.1793,-247.019	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:135:59,76:59:2124:76:2709:-203.414,0,-150.789	0/1:49:11,38:11:396:38:1361:-108.04,0,-21.2323	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:13:12,1:12:432:1:36:0,-0.315115,-35.6229	0/1:73:31,42:31:1093:42:1508:-114.039,0,-76.7025	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:231:103,128:103:3696:128:4573:-342.197,0,-263.304	0/1:194:80,114:80:2856:114:4084:-309.341,0,-198.878	0/1:41:16,25:16:576:25:900:-68.9788,0,-39.8328	0/0:54:54,0:54:1929:0:0:0,-16.2556,-173.885	0/0:118:113,5:113:4041:5:176:0,-19.3365,-347.691	0/0:72:72,0:72:2577:0:0:0,-21.6742,-232.177	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.72	0/0:135:135,0:135:4833:0:0:0,-40.639,-435.123	0/1:34:14,20:14:504:20:716:-54.5327,0,-35.4631	0/0:121:120,1:120:4304:1:36:0,-32.8264,-383.938	0/1:21:4,17:4:144:17:608:-48.7304,0,-6.99199	0/0:94:93,1:93:3340:1:36:0,-24.6985,-297.218	0/0:92:92,0:92:3289:0:0:0,-27.6948,-296.228	0/0:167:167,0:167:5962:0:0:0,-50.272,-536.685	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.334	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:77:40,37:40:1436:37:1332:-97.0031,0,-106.358	0/0:137:137,0:137:4905:0:0:0,-41.2411,-441.599	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.768	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:56:55,0:55:1972:0:0:0,-16.5566,-177.542	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:52:21,31:21:756:31:1108:-84.3774,0,-52.7137	0/1:71:26,45:26:936:45:1620:-124.717,0,-63.1863	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.628
chr04	25709481	.	ATCCAGTAC	CTCCAGTAC,CTCCGGTAC	165893	PASS	AB=0.486486,0.507472;ABP=7.99882,4.53551;AC=146,40;AF=0.784946,0.215054;AN=186;AO=6007,1609;CIGAR=1X8M,1X3M1X4M;DP=7657;DPB=7658.78;DPRA=41.6033,1.10016;EPP=13047,3496.91;EPPR=0;GTI=1;LEN=1,9;MEANALT=1.86957,2.3913;MQM=59.9647,58.8608;MQMR=0;NS=93;NUMALT=2;ODDS=3.86866;PAIRED=0,0;PAIREDR=0;PAO=5,5;PQA=153.333,153.333;PQR=36;PRO=1.66667;QA=215392,56735;QR=0;RO=0;RPL=0,0;RPP=13047,3496.91;RPPR=0;RPR=6007,1609;RUN=1,1;SAF=6007,1609;SAP=13047,3496.91;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,11,13:0:0:11,13:384,449:-67.4477,-36.4825,-33.1712,-31.3097,0,-27.3963	1/1:43:0,42,0:0:0:42,0:1508,0:-135.655,-12.6433,0,-135.655,-12.6433,-135.655	1/1:103:0,102,0:0:0:102,0:3655,0:-328.25,-30.7051,0,-328.25,-30.7051,-328.25	1/1:190:0,189,1:0:0:189,1:6788,36:-610.629,-56.8947,0,-607.692,-53.5974,-607.391	1/1:73:0,73,0:0:0:73,0:2624,0:-236.407,-21.9752,0,-236.407,-21.9752,-236.407	1/1:66:0,65,0:0:0:65,0:2332,0:-209.78,-19.567,0,-209.78,-19.567,-209.78	1/2:111:0,58,53:0:0:58,53:2072,1856:-320.101,-151.163,-133.704,-169.291,0,-153.336	1/2:68:0,36,32:0:0:36,32:1284,1127:-196.251,-91.578,-80.741,-105.026,0,-95.3934	1/1:69:0,67,1:0:0:67,1:2404,35:-216.262,-20.169,0,-213.415,-17.327,-213.114	1/1:61:0,60,0:0:0:60,0:2156,0:-193.947,-18.0618,0,-193.947,-18.0618,-193.947	1/2:56:0,22,34:0:0:22,34:788,1194:-161.697,-97.4296,-90.8069,-64.6221,0,-54.3871	1/1:85:0,85,0:0:0:85,0:3040,0:-273.726,-25.5876,0,-273.726,-25.5876,-273.726	1/1:72:0,72,0:0:0:72,0:2584,0:-232.809,-21.6742,0,-232.809,-21.6742,-232.809	1/1:66:0,66,0:0:0:66,0:2372,0:-213.684,-19.868,0,-213.684,-19.868,-213.684	1/1:60:0,59,0:0:0:59,0:2116,0:-190.297,-17.7608,0,-190.297,-17.7608,-190.297	1/2:62:0,31,30:0:0:31,30:1112,1058:-176.723,-86.0194,-76.6875,-90.7008,0,-81.6699	1/1:62:0,62,0:0:0:62,0:2220,0:-200.064,-18.6639,0,-200.064,-18.6639,-200.064	1/2:49:0,23,26:0:0:23,26:824,927:-143.043,-75.841,-68.9173,-67.5596,0,-59.7328	1/2:27:0,14,13:0:0:14,13:504,455:-78.4852,-37.3561,-33.1417,-41.4837,0,-37.5703	1/2:169:0,93,76:0:0:93,76:3340,2672:-490.272,-217.806,-189.81,-272.82,0,-249.942	1/2:131:0,71,60:0:0:71,60:2540,2113:-379.081,-171.957,-150.584,-207.478,0,-189.416	1/1:96:0,94,1:0:0:94,1:3384,36:-304.414,-28.2968,0,-301.477,-25.3594,-301.176	1/2:76:0,40,32:0:0:40,32:1432,1136:-209.297,-92.5168,-80.4756,-116.78,0,-107.147	1/2:68:0,26,42:0:0:26,42:932,1498:-198.416,-122.402,-114.575,-76.3721,0,-63.7288	1/1:62:0,62,0:0:0:62,0:2224,0:-200.354,-18.6639,0,-200.354,-18.6639,-200.354	1/2:257:0,138,117:0:0:138,117:4956,4116:-739.238,-334.947,-293.405,-404.32,0,-369.099	1/2:167:0,73,93:0:0:73,93:2624,3279:-480.793,-266.717,-244.742,-214.072,0,-186.076	1/2:51:0,18,33:0:0:18,33:640,1177:-148.409,-96.2544,-90.8359,-52.5108,0,-42.5768	1/1:229:0,229,0:0:0:229,0:8216,0:-739.344,-68.9359,0,-739.344,-68.9359,-739.344	1/2:72:0,43,29:0:0:43,29:1539,1027:-209.512,-84.013,-71.0687,-125.855,0,-117.125	1/2:91:0,46,44:0:0:46,44:1652,1523:-258.493,-123.724,-109.876,-134.83,0,-121.584	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:212:0,212,0:0:0:212,0:7608,0:-684.755,-63.8184,0,-684.755,-63.8184,-684.755	1/1:156:0,155,0:0:0:155,0:5556,0:-499.803,-46.6597,0,-499.803,-46.6597,-499.803	1/1:65:0,65,0:0:0:65,0:2340,0:-210.859,-19.567,0,-210.859,-19.567,-210.859	.:.:.:.:.:.:.:.	1/2:133:0,77,55:0:0:77,55:2760,1954:-384.006,-158.9,-135.721,-225.102,0,-208.546	1/2:33:0,11,22:0:0:11,22:396,787:-96.7992,-64.4868,-61.1755,-32.6714,0,-26.0488	1/2:78:0,32,43:0:0:32,43:1148,1512:-216.561,-122.92,-113.287,-93.6628,0,-80.7186	1/2:72:0,31,40:0:0:31,40:1116,1413:-206.171,-115.107,-105.775,-91.1539,0,-79.1127	1/1:68:0,68,0:0:0:68,0:2412,0:-217.337,-20.47,0,-217.337,-20.47,-217.337	1/1:66:0,66,0:0:0:66,0:2364,0:-213.018,-19.868,0,-213.018,-19.868,-213.018	1/1:70:0,70,0:0:0:70,0:2493,0:-224.618,-21.0721,0,-224.618,-21.0721,-224.618	1/2:127:0,68,59:0:0:68,59:2440,2075:-368.249,-169.219,-148.749,-199.384,0,-181.624	1/2:117:0,64,53:0:0:64,53:2292,1868:-339.293,-152.372,-133.106,-187.275,0,-171.321	1/1:104:0,104,0:0:0:104,0:3728,0:-335.702,-31.3071,0,-335.702,-31.3071,-335.702	1/1:130:0,130,0:0:0:130,0:4644,0:-418.124,-39.1339,0,-418.124,-39.1339,-418.124	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:113:0,112,0:0:0:112,0:4024,0:-361.984,-33.7154,0,-361.984,-33.7154,-361.984	1/2:62:0,43,19:0:0:43,19:1536,677:-180.771,-55.5388,-42.5945,-125.589,0,-119.869	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:114:0,33,81:0:0:33,81:1180,2851:-328.663,-232.444,-222.51,-96.5741,0,-72.1906	1/2:45:0,22,23:0:0:22,23:788,810:-130.504,-66.2364,-59.6137,-64.6221,0,-57.6984	2/2:2:0,0,2:0:0:0,2:0,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chr04	25709534	.	GAAA	AAAA,AAAT	167256	PASS	AB=0.48567,0.512461;ABP=8.73595,7.33972;AC=146,40;AF=0.784946,0.215054;AN=186;AO=6070,1658;CIGAR=1X3M,1X2M1X;DP=7752;DPB=7756;DPRA=42.1196,1.06371;EPP=13175.2,3594.63;EPPR=9.52472;GTI=1;LEN=1,4;MEANALT=1.69565,2.13043;MQM=59.9634,58.81;MQMR=60;NS=93;NUMALT=2;ODDS=3.05812;PAIRED=0,0;PAIREDR=0;PAO=6,6;PQA=194,194;PQR=0;PRO=0;QA=216407,57984;QR=108;RO=3;RPL=6067,1651;RPP=13157.8,3542.77;RPPR=9.52472;RPR=3,7;RUN=1,1;SAF=6068,1652;SAP=13166.5,3551.38;SAR=2,6;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,11,13:0:0:11,13:387,452:-68.2592,-36.7531,-33.4417,-31.8546,0,-27.9412	1/1:45:0,45,0:0:0:45,0:1607,0:-144.919,-13.5464,0,-144.919,-13.5464,-144.919	1/1:105:0,105,0:0:0:105,0:3742,0:-336.438,-31.6082,0,-336.438,-31.6082,-336.438	1/1:195:0,195,0:0:0:195,0:6984,0:-628.624,-58.7009,0,-628.624,-58.7009,-628.624	1/1:73:0,73,0:0:0:73,0:2598,0:-234.068,-21.9752,0,-234.068,-21.9752,-234.068	1/1:65:0,65,0:0:0:65,0:2307,0:-207.891,-19.567,0,-207.891,-19.567,-207.891	1/2:110:0,57,53:0:0:57,53:2030,1861:-317.119,-151.66,-134.501,-165.812,0,-149.858	1/2:70:0,37,33:0:0:37,33:1312,1164:-201.519,-94.628,-83.4899,-107.244,0,-97.3096	1/1:70:0,69,1:0:0:69,1:2449,30:-220.363,-20.7711,0,-217.966,-18.0728,-217.664	1/1:61:0,61,0:0:0:61,0:2179,0:-196.375,-18.3628,0,-196.375,-18.3628,-196.375	1/2:57:0,22,35:0:0:22,35:792,1220:-164.098,-99.4703,-92.8476,-64.983,0,-54.447	1/1:86:1,85,0:1:36:85,0:3015,0:-267.984,-22.2903,0,-268.285,-25.5876,-271.222	1/1:75:0,75,0:0:0:75,0:2665,0:-240.095,-22.5773,0,-240.095,-22.5773,-240.095	1/1:66:0,65,0:0:0:65,0:2321,0:-208.898,-19.567,0,-208.898,-19.567,-208.898	1/1:61:0,60,0:0:0:60,0:2152,0:-193.646,-18.0618,0,-193.646,-18.0618,-193.646	1/2:67:0,33,34:0:0:33,34:1168,1177:-191.048,-95.9049,-85.9709,-95.4932,0,-85.2582	1/1:66:0,66,0:0:0:66,0:2364,0:-213.018,-19.868,0,-213.018,-19.868,-213.018	1/2:50:0,23,26:0:0:23,26:820,919:-141.611,-74.7671,-67.8434,-66.8582,0,-59.0315	1/2:28:0,14,14:0:0:14,14:500,471:-79.2542,-38.479,-34.2646,-41.1218,0,-36.9073	1/2:173:0,94,77:0:0:94,77:3352,2701:-493.044,-219.798,-191.501,-273.269,0,-250.09	1/2:135:1,72,62:1:36:72,62:2583,2131:-380.114,-169.721,-150.984,-207.747,0,-192.02	1/1:99:0,98,1:0:0:98,1:3500,36:-314.852,-29.5009,0,-311.914,-26.2037,-311.613	1/2:78:0,40,38:0:0:40,38:1436,1330:-225.626,-108.483,-96.442,-117.496,0,-106.057	1/2:67:0,25,42:0:0:25,42:890,1468:-192.241,-119.701,-112.176,-72.8934,0,-60.2501	1/1:62:0,62,0:0:0:62,0:2188,0:-197.179,-18.6639,0,-197.179,-18.6639,-197.179	1/2:257:0,140,117:0:0:140,117:4992,4085:-739.352,-332.421,-290.277,-407.224,0,-372.003	1/2:170:0,70,99:0:0:70,99:2490,3455:-483.737,-280.811,-259.739,-202.929,0,-173.127	1/2:53:0,19,34:0:0:19,34:662,1200:-151.853,-98.0203,-92.3007,-54.1826,0,-43.9475	1/1:229:0,227,0:0:0:227,0:8109,0:-729.532,-68.3338,0,-729.532,-68.3338,-729.532	1/2:75:0,44,31:0:0:44,31:1567,1069:-214.907,-87.1841,-73.9387,-128.072,0,-118.741	1/2:92:0,48,44:0:0:48,44:1673,1538:-261.455,-125.402,-110.953,-136.402,0,-123.157	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:216:0,216,0:0:0:216,0:7692,0:-692.317,-65.0225,0,-692.317,-65.0225,-692.317	1/1:155:0,155,0:0:0:155,0:5560,0:-500.523,-46.6597,0,-500.523,-46.6597,-500.523	1/1:65:0,64,0:0:0:64,0:2258,0:-203.123,-19.2659,0,-203.123,-19.2659,-203.123	.:.:.:.:.:.:.:.	1/2:138:0,81,57:0:0:81,57:2896,1995:-398.48,-162.339,-137.956,-236.493,0,-219.334	1/2:35:0,11,24:0:0:11,24:392,844:-100.963,-69.009,-65.6977,-32.3087,0,-25.084	1/2:78:0,32,46:0:0:32,46:1148,1614:-225.136,-131.494,-121.861,-93.9969,0,-80.1495	1/2:76:0,34,42:0:0:34,42:1216,1467:-218.778,-119.62,-109.385,-99.5115,0,-86.8683	1/1:61:0,61,0:0:0:61,0:2167,0:-195.178,-18.3628,0,-195.178,-18.3628,-195.178	1/1:69:0,69,0:0:0:69,0:2446,0:-220.395,-20.7711,0,-220.395,-20.7711,-220.395	1/1:69:0,69,0:0:0:69,0:2461,0:-221.743,-20.7711,0,-221.743,-20.7711,-221.743	1/2:130:0,69,61:0:0:69,61:2451,2143:-373.94,-174.22,-153.449,-200.072,0,-181.709	1/2:116:0,63,53:0:0:63,53:2260,1847:-334.757,-150.412,-131.447,-184.698,0,-168.743	1/1:106:0,106,0:0:0:106,0:3773,0:-339.725,-31.9092,0,-339.725,-31.9092,-339.725	1/1:130:1,129,0:1:36:129,0:4616,0:-412.005,-35.5356,0,-412.306,-38.8329,-415.244	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:109:0,109,0:0:0:109,0:3861,0:-347.683,-32.8123,0,-347.683,-32.8123,-347.683	1/2:63:0,43,20:0:0:43,20:1534,701:-182.449,-57.3927,-44.4484,-125.409,0,-119.388	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:117:0,35,82:0:0:35,82:1248,2863:-334.959,-233.225,-222.689,-102.089,0,-77.4044	1/2:45:0,22,23:0:0:22,23:788,796:-129.256,-64.9863,-58.3636,-64.6221,0,-57.6984	2/2:2:0,0,2:0:0:0,2: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chr04	25978128	.	G	A	20227.1	PASS	AB=0.492102;ABP=4.34801;AC=40;AF=0.212766;AN=188;AO=1218;CIGAR=1X;DP=5913;DPB=5913;DPRA=0.995235;EPP=2647.86;EPPR=10191.6;GTI=0;LEN=1;MEANALT=1.02381;MQM=59.9433;MQMR=59.9919;NS=94;NUMALT=1;ODDS=3.81538;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43604;QR=167648;RO=4692;RPL=0;RPP=2647.86;RPPR=10191.6;RPR=1218;RUN=1;SAF=1218;SAP=2647.86;SAR=0;SRF=4692;SRP=10191.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:11,9:11:396:9:309:-22.1201,0,-29.9621	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:165:165,0:165:5919:0:0:0,-49.6699,-532.817	0/0:140:140,0:140:4994:0:0:0,-42.1442,-449.59	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:59:36,23:36:1273:23:824:-56.7225,0,-97.1102	0/1:90:54,36:54:1932:36:1292:-89.4911,0,-147.064	0/0:36:36,0:36:1262:0:0:0,-10.8371,-113.878	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/1:40:25,15:25:900:15:536:-36.5336,0,-69.2798	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:31:12,19:12:432:19:684:-52.5584,0,-29.8893	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:18:12,6:12:432:6:211:-13.9147,0,-33.8027	0/1:113:56,56:56:2016:56:2016:-147.638,0,-147.638	0/1:78:48,30:48:1690:30:1080:-74.0329,0,-128.902	0/0:102:101,0:101:3597:0:0:0,-30.404,-323.576	0/1:82:44,38:44:1557:38:1349:-97.0238,0,-115.735	0/1:44:17,27:17:608:27:972:-74.5526,0,-41.8067	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/1:185:85,100:85:3048:100:3584:-267.075,0,-218.858	0/1:132:74,58:74:2652:58:2088:-148.454,0,-199.19	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:138:138,0:138:4948:0:0:0,-41.5421,-445.469	0/1:80:40,40:40:1432:40:1436:-105.455,0,-105.095	0/1:87:41,46:41:1453:46:1652:-122.779,0,-104.874	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:105:105,0:105:3741:0:0:0,-31.6081,-336.89	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:74:54,20:54:1925:20:705:-41.4966,0,-151.249	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:115:69,46:69:2480:46:1652:-114.22,0,-188.835	0/1:17:6,11:6:216:11:381:-29.5031,0,-14.673	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:133:133,0:133:4742:0:0:0,-40.037,-426.937	0/0:97:97,0:97:3465:0:0:0,-29.1999,-312.061	0/1:152:62,90:62:2228:90:3221:-243.984,0,-155.027	0/1:84:44,40:44:1561:40:1409:-101.817,0,-115.493	0/0:130:129,0:129:4620:0:0:0,-38.8329,-415.603	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:129:129,0:129:4625:0:0:0,-38.8329,-416.411	0/1:55:21,34:21:741:34:1209:-92.5583,0,-50.4549	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/1:136:69,67:69:2468:67:2412:-176.396,0,-181.434	0/1:37:18,19:18:644:19:669:-49.3958,0,-47.1525	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:27:8,19:8:288:19:676:-53.0402,0,-18.1396	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:107:68,39:68:2440:39:1400:-94.0881,0,-187.645	0/1:146:68,78:68:2425:78:2785:-206.853,0,-174.554	0/1:39:15,24:15:525:24:860:-65.9817,0,-35.8379	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.78	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:101:99,2:99:3537:2:72:0,-23.5673,-311.701	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:103:50,53:50:1788:53:1904:-140.632,0,-130.197	0/0:63:63,0:63:2181:0:0:0,-18.9649,-196.549	0/0:98:98,0:98:3497:0:0:0,-29.5009,-314.94	0/0:102:102,0:102:3657:0:0:0,-30.7051,-329.331	0/0:117:117,0:117:4169:0:0:0,-35.2205,-375.393	0/0:65:64,1:64:2266:1:36:0,-15.9687,-200.601	0/1:15:7,8:7:252:8:288:-21.7516,0,-18.5135	0/0:93:93,0:93:3314:0:0:0,-27.9958,-298.476	0/0:78:78,0:78:2762:0:0:0,-23.4803,-248.82	0/0:159:159,0:159:5694:0:0:0,-47.8638,-512.571	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/1:70:31,39:31:1088:39:1400:-105.227,0,-77.1544	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:32:32,0:32:1137:0:0:0,-9.63296,-102.637	0/1:85:42,43:42:1512:43:1544:-113.666,0,-110.787	0/1:27:8,19:8:288:19:684:-53.7625,0,-18.1396	0/0:53:53,0:53:1877:0:0:0,-15.9546,-169.207	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136
chr04	25978158	.	T	G	19483.6	PASS	AB=0.496436;ABP=3.27343;AC=40;AF=0.212766;AN=188;AO=1187;CIGAR=1X;DP=5746;DPB=5746;DPRA=0.98506;EPP=2580.55;EPPR=9874.54;GTI=0;LEN=1;MEANALT=1;MQM=59.9781;MQMR=59.9868;NS=94;NUMALT=1;ODDS=3.23234;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42178;QR=162064;RO=4558;RPL=1187;RPP=2580.55;RPPR=9874.54;RPR=0;RUN=1;SAF=1187;SAP=2580.55;SAR=0;SRF=4558;SRP=9900.58;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/0:160:160,0:160:5679:0:0:0,-48.1648,-511.232	0/0:140:140,0:140:4960:0:0:0,-42.1442,-446.539	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/1:59:37,22:37:1324:22:788:-53.484,0,-101.701	0/1:84:50,34:50:1775:34:1207:-83.6488,0,-134.746	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:52:52,0:52:1834:0:0:0,-15.6536,-165.339	0/1:39:24,15:24:851:15:527:-36.02,0,-65.1693	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.003	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:31:12,19:12:432:19:665:-50.8409,0,-29.8893	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:13:8,5:8:288:5:172:-11.9046,0,-22.354	0/1:17:12,5:12:432:5:176:-11.0675,0,-34.1037	0/1:114:59,55:59:2095:55:1972:-143.437,0,-154.502	0/1:76:46,30:46:1628:30:1076:-74.2746,0,-123.931	0/0:102:102,0:102:3634:0:0:0,-30.7051,-327.265	0/1:81:42,39:42:1492:39:1383:-100.385,0,-110.191	0/1:40:14,26:14:496:26:932:-72.1577,0,-32.9331	0/0:57:57,0:57:2026:0:0:0,-17.1587,-182.611	0/1:179:80,99:80:2855:99:3503:-261.595,0,-203.302	0/1:128:72,56:72:2576:56:1990:-140.841,0,-193.558	0/1:12:4,8:4:131:8:288:-22.655,0,-8.50111	0/0:134:134,0:134:4779:0:0:0,-40.338,-430.268	0/1:75:36,39:36:1280:39:1384:-102.28,0,-92.926	0/1:86:40,46:40:1428:46:1646:-122.539,0,-102.929	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:18:7,11:7:248:11:381:-29.2021,0,-17.2457	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:90:90,0:90:3194:0:0:0,-27.0927,-287.684	0/0:101:101,0:101:3582:0:0:0,-30.404,-322.586	0/0:32:32,0:32:1108:0:0:0,-9.63296,-100.024	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:67:50,17:50:1792:17:608:-34.883,0,-141.393	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/1:110:66,44:66:2344:44:1557:-107.306,0,-178.107	0/1:18:7,11:7:248:11:396:-30.5642,0,-17.2457	0/0:30:30,0:30:1055:0:0:0,-9.0309,-95.26	0/0:132:132,0:132:4708:0:0:0,-39.736,-423.882	0/0:95:95,0:95:3392:0:0:0,-28.5978,-305.496	0/1:146:59,87:59:2099:87:3097:-235.002,0,-145.229	0/1:81:42,39:42:1496:39:1387:-100.745,0,-110.551	0/0:124:124,0:124:4426:0:0:0,-37.3277,-398.512	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:124:124,0:124:4431:0:0:0,-37.3277,-398.962	0/1:53:19,34:19:684:34:1215:-93.7018,0,-45.9357	0/0:15:14,0:14:496:0:0:0,-4.21442,-44.6148	0/1:130:65,65:65:2305:65:2303:-168.395,0,-168.576	0/1:35:16,19:16:558:19:680:-50.9931,0,-40.0104	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:27:8,19:8:288:19:680:-53.4014,0,-18.1396	0/0:82:82,0:82:2885:0:0:0,-24.6845,-259.885	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:103:65,38:65:2307:38:1368:-92.4147,0,-176.885	0/1:137:64,73:64:2288:73:2570:-190.27,0,-164.941	0/1:39:15,24:15:536:24:860:-65.9817,0,-36.8346	0/0:88:88,0:88:3079:0:0:0,-26.4906,-277.34	0/0:106:106,0:106:3773:0:0:0,-31.9092,-339.769	0/0:96:94,2:94:3336:2:72:0,-22.0622,-293.623	0/0:30:30,0:30:1060:0:0:0,-9.0309,-95.7113	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:101:48,53:48:1715:53:1900:-140.874,0,-124.231	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.877	0/0:94:94,0:94:3310:0:0:0,-28.2968,-298.117	0/0:100:100,0:100:3566:0:0:0,-30.103,-321.148	0/0:112:112,0:112:3972:0:0:0,-33.7154,-357.672	0/0:65:64,1:64:2284:1:36:0,-15.9687,-202.224	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/0:90:90,0:90:3209:0:0:0,-27.0927,-289.032	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:156:156,0:156:5562:0:0:0,-46.9607,-500.619	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:15:12,3:12:396:3:108:-5.55972,0,-31.4415	0/1:68:29,39:29:1021:39:1369:-103.036,0,-71.7302	0/0:15:15,0:15:523:0:0:0,-4.51545,-47.3985	0/0:41:41,0:41:1442:0:0:0,-12.3422,-130.074	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:81:39,42:39:1388:42:1474:-108.567,0,-100.835	0/1:27:8,19:8:288:19:652:-50.8693,0,-18.1396	0/0:52:52,0:52:1835:0:0:0,-15.6536,-165.43	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776
chr04	26066325	.	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chr04	26081152	.	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chr04	26081182	.	T	C	20835.3	PASS	AB=0.514737;ABP=10.1784;AC=41;AF=0.22043;AN=186;AO=1977;CIGAR=1X;DP=9021;DPB=9021;DPRA=1.21967;EPP=4296.01;EPPR=15285.8;GTI=0;LEN=1;MEANALT=1.01961;MQM=30.7916;MQMR=59.8803;NS=93;NUMALT=1;ODDS=3.75876;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67376;QR=250493;RO=7042;RPL=0;RPP=4296.01;RPPR=15285.8;RPR=1977;RUN=1;SAF=0;SAP=4296.01;SAR=1977;SRF=2;SRP=15277.2;SRR=7040;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:17,20:17:608:20:663:-35.4474,0,-43.885	0/0:164:162,2:162:5748:2:72:0,-44.1701,-512.225	0/0:92:92,0:92:3280:0:0:0,-27.6948,-295.421	0/0:241:240,1:240:8559:1:32:0,-69.6491,-767.409	0/0:71:70,1:70:2508:1:36:0,-17.7749,-222.372	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:111:43,68:43:1519:68:2349:-148.464,0,-103.585	0/1:109:63,46:63:2239:46:1574:-78.295,0,-168.961	0/0:91:90,1:90:3212:1:36:0,-23.7955,-285.669	0/0:58:58,0:58:2051:0:0:0,-17.4597,-184.861	0/1:57:34,23:34:1216:23:783:-42.8372,0,-92.5526	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.848	0/0:84:84,0:84:2975:0:0:0,-25.2865,-267.822	0/0:57:57,0:57:2010:0:0:0,-17.1587,-181.172	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/1:52:30,22:30:1068:22:755:-40.3132,0,-80.7785	0/0:68:68,0:68:2401:0:0:0,-20.47,-216.344	0/1:58:35,23:35:1248:23:772:-38.0365,0,-95.1651	0/1:41:21,20:21:744:20:688:-36.226,0,-54.9421	0/1:301:161,140:161:5753:140:4797:-277.439,0,-426.801	0/1:124:63,61:63:2231:61:2051:-114.98,0,-163.536	0/0:169:169,0:169:6034:0:0:0,-50.8741,-543.136	0/1:86:39,47:39:1387:47:1643:-99.3571,0,-99.2028	0/1:85:36,49:36:1279:49:1627:-96.2765,0,-89.8203	0/0:107:107,0:107:3778:0:0:0,-32.2102,-340.197	0/1:341:191,150:191:6823:150:5139:-308.601,0,-511.344	0/1:271:166,105:166:5896:105:3622:-185.601,0,-449.163	0/1:36:23,13:23:798:13:452:-22.1687,0,-61.2995	0/0:438:438,0:438:15604:0:0:0,-131.851,-1404.06	0/1:118:58,60:58:2072:60:2039:-116.337,0,-151.184	0/1:114:50,64:50:1776:64:2119:-129.44,0,-125.806	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:17:11,6:11:392:6:208:-10.6368,0,-30.5025	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:198:197,1:197:7008:1:36:0,-56.0057,-627.187	0/0:196:195,1:195:6972:1:32:0,-56.2142,-624.733	0/0:67:67,0:67:2381:0:0:0,-20.169,-214.546	1/1:4:0,4:0:0:4:125:-9.84398,-1.20412,0	0/1:163:63,100:63:2233:100:3407:-202.471,0,-152.164	0/1:40:20,20:20:716:20:700:-38.7616,0,-52.7265	0/1:154:83,71:83:2951:71:2433:-135.132,0,-219.378	0/1:76:42,34:42:1489:34:1104:-64.2819,0,-111.424	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.225	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.814	0/0:80:79,1:79:2787:1:36:0,-20.5339,-247.514	0/1:135:31,104:31:1108:104:3574:-235.227,0,-59.3919	0/1:102:35,67:35:1248:67:2288:-145.232,0,-81.9198	0/0:140:140,0:140:5000:0:0:0,-42.1442,-450.132	0/0:153:152,0:152:5397:0:0:0,-45.7566,-485.632	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:137:137,0:137:4882:0:0:0,-41.2411,-439.444	0/1:43:17,26:17:608:26:891:-58.4055,0,-42.1077	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/1:129:35,93:35:1247:93:3204:-195.426,0,-73.7213	0/1:23:5,18:5:180:18:607:-41.3103,0,-9.62837	1/1:1:0,1:0:0:1:32:-2.98766,-0.30103,0	0/1:24:8,16:8:284:16:533:-36.7308,0,-18.6786	0/1:77:22,55:22:784:55:1911:-117.848,0,-47.7012	0/0:102:102,0:102:3606:0:0:0,-30.7051,-324.746	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:167:72,95:72:2557:95:3246:-208.003,0,-180.106	0/1:187:91,96:91:3251:96:3292:-196.035,0,-235.308	0/1:56:35,21:35:1248:21:713:-36.2587,0,-95.7656	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.551	0/0:134:134,0:134:4782:0:0:0,-40.338,-430.536	0/0:90:88,2:88:3118:2:68:0,-21.4367,-275.19	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1716	0/0:87:85,2:85:3039:2:68:0,-21.0683,-268.557	0/0:84:84,0:84:2973:0:0:0,-25.2865,-267.783	0/1:22:16,6:16:559:6:208:-9.89234,0,-43.7438	0/1:124:41,83:41:1472:83:2855:-164.544,0,-95.4484	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/0:137:135,2:135:4802:2:72:0,-35.7259,-426.823	0/0:202:202,0:202:7174:0:0:0,-60.8081,-645.688	0/0:118:117,1:117:4176:1:36:0,-31.9233,-372.379	0/0:78:78,0:78:2767:0:0:0,-23.4803,-249.266	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:80:80,0:80:2819:0:0:0,-24.0824,-253.95	0/0:145:145,0:145:5157:0:0:0,-43.6493,-464.233	0/0:204:204,0:204:7234:0:0:0,-61.4101,-650.992	0/0:133:133,0:133:4738:0:0:0,-40.037,-426.578	0/0:71:71,0:71:2506:0:0:0,-21.3731,-225.793	0/1:80:49,31:49:1729:31:999:-56.1837,0,-131.81	0/1:125:76,49:76:2716:49:1585:-88.1769,0,-207.055	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.108	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.93	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.911	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/1:51:31,20:31:1099:20:684:-34.6848,0,-83.8669	0/1:64:30,34:30:1068:34:1144:-68.7484,0,-77.1661	0/0:124:124,0:124:4406:0:0:0,-37.3277,-396.707	0/0:107:106,1:106:3759:1:36:0,-28.6119,-334.91
chr04	26081231	.	AGTA	GGTA,GGTT	174830	PASS	AB=0.449264,0.546605;ABP=89.6051,76.0773;AC=145,41;AF=0.77957,0.22043;AN=186;AO=6711,2136;CIGAR=1X3M,1X2M1X;DP=8885;DPB=8885.5;DPRA=39.033,1.27021;EPP=14567.1,4641.28;EPPR=7.35324;GTI=1;LEN=1,4;MEANALT=1.86813,2.33333;MQM=59.8783,30.7659;MQMR=60;NS=93;NUMALT=2;ODDS=0.905598;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=18,18;PQR=0;PRO=0;QA=235290,73574;QR=72;RO=2;RPL=6711,2136;RPP=14575.8,4641.28;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=1,0;SAP=14567.1,4641.28;SAR=6710,2136;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,17,23:0:0:17,23:608,773:-96.3618,-46.7718,-41.6543,-49.9051,0,-42.9814	1/1:154:0,150,2:0:0:150,2:5296,67:-476.191,-45.1545,0,-471.956,-40.9638,-471.354	1/1:88:0,88,0:0:0:88,0:3075,0:-276.983,-26.4906,0,-276.983,-26.4906,-276.983	1/1:237:0,235,1:0:0:235,1:8326,36:-749.067,-70.7421,0,-746.619,-68.2763,-746.318	1/1:70:0,69,1:0:0:69,1:2419,36:-217.608,-20.7711,0,-214.672,-17.4755,-214.371	1/1:28:0,28,0:0:0:28,0:992,0:-89.5944,-8.42884,0,-89.5944,-8.42884,-89.5944	1/2:120:0,44,75:0:0:44,75:1540,2609:-300.983,-175.671,-162.426,-125.284,0,-102.707	1/2:110:0,58,50:0:0:58,50:2044,1698:-271.239,-104.773,-87.3133,-166.509,0,-151.458	1/1:86:0,86,0:0:0:86,0:3006,0:-270.699,-25.8886,0,-270.699,-25.8886,-270.699	1/1:52:0,52,0:0:0:52,0:1850,0:-166.78,-15.6536,0,-166.78,-15.6536,-166.78	1/2:59:0,33,26:0:0:33,26:1123,908:-152.132,-61.0443,-51.1103,-91.4012,0,-83.5744	1/1:67:0,67,0:0:0:67,0:2318,0:-208.873,-20.169,0,-208.873,-20.169,-208.873	1/1:79:0,78,1:0:0:78,1:2723,28:-245.03,-23.4803,0,-242.842,-21.0145,-242.541	1/1:50:0,50,0:0:0:50,0:1729,0:-155.891,-15.0515,0,-155.891,-15.0515,-155.891	1/1:74:0,74,0:0:0:74,0:2581,0:-232.541,-22.2762,0,-232.541,-22.2762,-232.541	1/2:47:0,22,25:0:0:22,25:775,851:-118.83,-55.6997,-49.0771,-63.4485,0,-55.9228	1/1:66:0,65,0:0:0:65,0:2247,0:-202.131,-19.567,0,-202.131,-19.567,-202.131	1/2:56:0,32,24:0:0:32,24:1097,820:-140.308,-51.2073,-41.5743,-89.4015,0,-82.1768	1/2:41:0,21,19:0:0:21,19:731,644:-99.0382,-39.5559,-33.2342,-59.5121,0,-53.7925	1/2:311:0,159,152:0:0:159,152:5619,5244:-814.12,-356.498,-308.634,-457.946,0,-412.189	1/2:127:0,59,67:0:0:59,67:2084,2276:-315.408,-145.655,-127.895,-169.71,0,-149.541	1/1:159:0,158,0:0:0:158,0:5579,0:-501.883,-47.5627,0,-501.883,-47.5627,-501.883	1/2:92:0,37,55:0:0:37,55:1284,1868:-232.439,-128.066,-116.928,-104.698,0,-88.1412	1/2:94:0,36,57:0:0:36,57:1266,1943:-230.538,-127.461,-116.624,-103.192,0,-86.0337	1/1:98:0,98,0:0:0:98,0:3428,0:-308.715,-29.5009,0,-308.715,-29.5009,-308.715	1/2:339:0,174,161:0:0:174,161:6121,5588:-896.331,-398.044,-345.665,-498.349,0,-449.883	1/2:269:0,156,113:0:0:156,113:5472,3922:-700.031,-254.685,-207.724,-445.658,0,-411.642	1/2:35:0,20,15:0:0:20,15:700,526:-90.5939,-33.6011,-27.5805,-57.3029,0,-52.7874	1/1:416:0,414,0:0:0:414,0:14497,0:-1304.22,-124.626,0,-1304.22,-124.626,-1304.22	1/2:123:0,56,66:0:0:56,66:1971,2245:-306.986,-146.734,-129.876,-160.212,0,-140.344	1/2:119:0,50,69:0:0:50,69:1768,2366:-303.882,-159.857,-144.805,-144.352,0,-123.581	1/1:2:0,2,0:0:0:2,0:64,0:-6.07869,-0.60206,0,-6.07869,-0.60206,-6.07869	1/2:17:0,11,6:0:0:11,6:388,211:-45.6687,-14.0334,-10.7221,-31.946,0,-30.1399	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:189:1,186,0:1:36:186,0:6479,0:-579.636,-53.0425,0,-579.937,-55.9916,-582.875	1/1:190:0,189,1:0:0:189,1:6678,35:-600.795,-56.8947,0,-598.503,-54.3149,-598.202	1/1:62:0,62,0:0:0:62,0:2140,0:-192.866,-18.6639,0,-192.866,-18.6639,-192.866	2/2:4:0,0,4:0:0:0,4:0,138:-10.5519,-10.5519,-10.5519,-1.20412,-1.20412,0	1/2:166:0,62,104:0:0:62,104:2182,3588:-410.055,-232.399,-213.735,-177.982,0,-146.675	1/2:42:0,20,22:0:0:20,22:691,757:-105.081,-48.9047,-42.8841,-56.4897,0,-49.8671	1/2:153:0,75,78:0:0:75,78:2627,2689:-389.916,-176.2,-153.623,-214.033,0,-190.553	1/2:75:0,37,38:0:0:37,38:1263,1296:-189.758,-87.2446,-76.1065,-102.828,0,-91.3889	1/1:61:0,61,0:0:0:61,0:2124,0:-191.399,-18.3628,0,-191.399,-18.3628,-191.399	1/1:56:0,55,0:0:0:55,0:1932,0:-173.796,-16.5567,0,-173.796,-16.5567,-173.796	1/1:76:0,76,0:0:0:76,0:2675,0:-240.939,-22.8783,0,-240.939,-22.8783,-240.939	1/2:141:0,28,113:0:0:28,113:983,3895:-345.328,-265.314,-256.886,-80.3537,0,-46.3373	1/2:110:0,35,75:0:0:35,75:1232,2597:-275.737,-175.423,-164.887,-100.646,0,-78.0692	1/1:133:0,133,0:0:0:133,0:4686,0:-421.889,-40.037,0,-421.889,-40.037,-421.889	1/1:154:0,154,0:0:0:154,0:5402,0:-486.32,-46.3586,0,-486.32,-46.3586,-486.32	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:133:0,131,0:0:0:131,0:4610,0:-414.68,-39.4349,0,-414.68,-39.4349,-414.68	1/2:44:0,18,26:0:0:18,26:632,909:-116.17,-64.724,-59.3054,-51.78,0,-43.9532	1/1:14:0,14,0:0:0:14,0:475,0:-43.0735,-4.21442,0,-43.0735,-4.21442,-43.0735	1/2:137:0,34,103:0:0:34,103:1183,3557:-325.803,-229.595,-219.36,-96.5388,0,-65.5327	1/2:25:0,5,20:0:0:5,20:180,690:-61.8448,-47.1445,-45.6394,-15.0469,0,-9.02631	2/2: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chr04	26131840	.	T	A	16088.8	PASS	AB=0.455959;ABP=48.5325;AC=39;AF=0.207447;AN=188;AO=1238;CIGAR=1X;DP=6182;DPB=6182;DPRA=1.17152;EPP=2691.29;EPPR=10721.4;GTI=1;LEN=1;MEANALT=1.02222;MQM=37.9152;MQMR=49.626;NS=94;NUMALT=1;ODDS=3.67938;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44249;QR=175376;RO=4936;RPL=1238;RPP=2691.29;RPPR=10721.4;RPR=0;RUN=1;SAF=0;SAP=2691.29;SAR=1238;SRF=0;SRP=10721.4;SRR=4936;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:9,14:9:316:14:504:-38.7744,0,-21.8538	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:98:98,0:98:3467:0:0:0,-29.5009,-312.239	0/0:158:158,0:158:5559:0:0:0,-47.5627,-494.456	0/0:24:24,0:24:845:0:0:0,-7.22472,-75.328	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/1:88:60,28:60:2121:28:1006:-54.0024,0,-162.704	0/1:102:39,63:39:1350:63:2264:-173.317,0,-91.089	0/0:83:82,1:82:2883:1:36:0,-21.3872,-256.106	0/0:50:50,0:50:1777:0:0:0,-15.0515,-158.457	0/1:45:25,20:25:892:20:720:-44.2026,0,-65.3437	0/0:69:69,0:69:2449:0:0:0,-20.7711,-220.664	0/0:47:45,0:45:1612:0:0:0,-13.5463,-144.783	0/0:38:38,0:38:1352:0:0:0,-11.4391,-120.077	0/0:34:34,0:34:1201:0:0:0,-10.235,-107.099	0/1:30:14,16:14:504:16:576:-37.1697,0,-36.0532	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:16:3,13:3:108:13:468:-37.6432,0,-5.25869	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/1:145:75,70:75:2647:70:2489:-156.552,0,-192.035	0/1:110:73,37:73:2533:37:1324:-74.9067,0,-192.466	0/0:55:54,0:54:1936:0:0:0,-16.2556,-172.04	0/1:100:66,34:66:2349:34:1220:-67.4563,0,-178.478	0/1:28:15,13:15:536:13:464:-30.3131,0,-39.4728	0/0:55:55,0:55:1976:0:0:0,-16.5566,-176.398	0/1:118:67,51:67:2385:51:1828:-108.671,0,-176.224	0/1:127:66,61:66:2342:61:2177:-138.726,0,-170.698	0/1:19:8,11:8:288:11:396:-27.3822,0,-20.3182	0/0:179:179,0:179:6374:0:0:0,-53.8844,-565.563	0/1:226:111,115:111:3969:115:4120:-266.632,0,-286.338	0/1:253:138,114:138:4883:114:4062:-247.263,0,-357.874	0/1:9:6,3:6:216:3:108:-6.37998,0,-16.937	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.3285	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:12:11,0:11:396:0:0:0,-3.31133,-35.7603	0/0:117:117,0:117:4189:0:0:0,-35.2205,-369.808	0/0:95:94,0:94:3327:0:0:0,-28.2968,-294.308	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.77694	0/1:91:52,39:52:1841:39:1370:-83.8715,0,-136.39	0/1:27:10,17:10:360:17:608:-41.6615,0,-24.3302	0/1:75:42,33:42:1488:33:1188:-72.6751,0,-109.54	0/1:25:10,15:10:360:15:536:-34.8738,0,-24.2913	0/0:37:37,0:37:1324:0:0:0,-11.1381,-117.73	0/0:111:110,1:110:3905:1:36:0,-30.2267,-343.735	0/0:74:74,0:74:2618:0:0:0,-22.2762,-235.865	0/1:61:41,20:41:1460:20:716:-38.9042,0,-111.779	0/1:57:42,15:42:1478:15:540:-25.9119,0,-114.701	0/0:91:91,0:91:3256:0:0:0,-27.3937,-289.74	0/0:129:129,0:129:4598:0:0:0,-38.8329,-408.443	0/0:13:13,0:13:464:0:0:0,-3.91339,-40.8565	0/0:90:90,0:90:3206:0:0:0,-27.0927,-288.76	0/1:71:32,39:32:1144:39:1396:-91.2116,0,-80.2947	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/1:78:49,29:49:1737:29:1032:-60.6728,0,-131.358	0/1:38:25,13:25:896:13:464:-26.6939,0,-68.3466	0/0:11:10,1:10:345:1:36:0,-0.123706,-27.3736	0/1:8:5,3:5:176:3:108:-6.51711,0,-13.6159	0/1:42:28,14:28:985:14:504:-27.9599,0,-75.6508	0/0:210:209,0:209:7458:0:0:0,-62.9153,-662.077	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1745	0/1:153:82,71:82:2916:71:2529:-156.041,0,-213.496	0/1:112:65,47:65:2316:47:1680:-100.931,0,-172.874	0/1:53:35,18:35:1252:18:648:-35.7822,0,-95.2362	0/0:61:61,0:61:2177:0:0:0,-18.3628,-194.033	0/0:112:112,0:112:3971:0:0:0,-33.7154,-353.009	0/0:131:131,0:131:4624:0:0:0,-39.4349,-411.391	0/0:39:39,0:39:1392:0:0:0,-11.7402,-124.513	0/0:65:64,1:64:2296:1:36:0,-15.9687,-203.303	0/0:29:28,0:28:1008:0:0:0,-8.42884,-89.16	0/1:20:14,6:14:504:6:216:-11.5113,0,-37.7862	0/1:86:54,32:54:1921:32:1137:-76.7484,0,-147.277	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.293	0/0:92:92,0:92:3250:0:0:0,-27.6948,-289.944	0/0:59:59,0:59:2097:0:0:0,-17.7608,-186.133	0/0:68:68,0:68:2391:0:0:0,-20.47,-215.443	0/0:55:54,1:54:1936:1:21:0,-14.4567,-172.416	0/1:14:5,9:5:176:9:320:-24.9279,0,-11.9706	0/0:57:57,0:57:1999:0:0:0,-17.1587,-178.428	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/0:177:176,1:176:6259:1:36:0,-50.0947,-553.82	0/0:42:42,0:42:1500:0:0:0,-12.6433,-134.02	0/0:51:51,0:51:1828:0:0:0,-15.3525,-162.74	0/1:28:13,15:13:453:15:536:-33.85,0,-31.9009	0/1:83:39,44:39:1377:44:1571:-101.146,0,-98.0224	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.926	0/0:32:32,0:32:1152:0:0:0,-9.63296,-102.364	0/1:73:23,50:23:824:50:1787:-122.455,0,-51.5505	0/1:47:14,33:14:496:33:1188:-81.6373,0,-30.4006	0/0:78:78,0:78:2773:0:0:0,-23.4803,-247.064	0/0:56:56,0:56:2008:0:0:0,-16.8577,-178.925
chr04	26143505	.	G	A	7780.38	PASS	AB=0.326552;ABP=503.939;AC=39;AF=0.207447;AN=188;AO=636;CIGAR=1X;DP=5367;DPB=5367;DPRA=0.948599;EPP=1384.07;EPPR=10271.9;GTI=6;LEN=1;MEANALT=1.02326;MQM=59.8899;MQMR=59.9746;NS=94;NUMALT=1;ODDS=0.0331907;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22705;QR=168060;RO=4729;RPL=0;RPP=1384.07;RPPR=10263.2;RPR=636;RUN=1;SAF=0;SAP=1384.07;SAR=636;SRF=1;SRP=10263.2;SRR=4728;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:129:129,0:129:4584:0:0:0,-38.8329,-412.726	0/0:133:130,3:130:4616:3:108:0,-29.9618,-405.53	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:31:31,0:31:1081:0:0:0,-9.33193,-97.5964	0/1:38:19,19:19:684:19:669:-49.0948,0,-50.4512	0/1:43:29,14:29:1021:14:500:-32.3919,0,-79.256	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.496	0/0:78:78,0:78:2774:0:0:0,-23.4803,-249.9	0/1:19:11,8:11:388:8:284:-20.1838,0,-29.5378	0/0:80:80,0:80:2823:0:0:0,-24.0824,-254.297	0/0:78:78,0:78:2733:0:0:0,-23.4803,-246.212	0/0:71:71,0:71:2524:0:0:0,-21.3731,-227.41	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:39:24,15:24:856:15:532:-36.4729,0,-65.6209	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:22:16,6:16:567:6:216:-13.1679,0,-44.7381	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:66:59,7:59:2094:7:252:-3.16098,0,-168.861	0/1:76:45,31:45:1604:31:1111:-77.4229,0,-121.772	0/0:40:40,0:40:1418:0:0:0,-12.0412,-127.916	0/1:42:28,14:28:1000:14:504:-33.0548,0,-76.3934	0/1:26:18,8:18:644:8:288:-18.4406,0,-50.4638	0/0:44:44,0:44:1557:0:0:0,-13.2453,-140.42	0/1:107:71,36:71:2540:36:1283:-83.5624,0,-196.641	0/1:128:80,48:80:2822:48:1724:-116.782,0,-215.689	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/0:144:144,0:144:5156:0:0:0,-43.3483,-464.181	0/1:65:50,15:50:1779:15:536:-29.0079,0,-140.825	0/1:46:31,15:31:1095:15:536:-34.7274,0,-85.0117	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:182:182,0:182:6500:0:0:0,-54.7875,-585.084	0/0:67:67,0:67:2399:0:0:0,-20.169,-216.166	0/0:31:31,0:31:1086:0:0:0,-9.33193,-98.0476	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:52:40,11:40:1410:11:381:-18.9094,0,-111.484	0/1:25:19,6:19:680:6:216:-12.2648,0,-54.0034	0/1:38:22,16:22:768:16:576:-40.7358,0,-57.9985	0/1:34:24,10:24:860:10:351:-21.6917,0,-67.4868	0/0:55:55,0:55:1939:0:0:0,-16.5566,-174.786	0/0:57:57,0:57:2026:0:0:0,-17.1587,-182.611	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/1:95:74,21:74:2611:21:752:-39.4084,0,-206.639	0/1:77:47,30:47:1684:30:1076:-73.8673,0,-128.581	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.249	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:112:112,0:112:3964:0:0:0,-33.7154,-356.95	0/1:36:24,12:24:842:12:432:-28.3841,0,-65.26	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:88:61,27:61:2163:27:965:-60.6454,0,-168.446	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:9:6,3:6:201:3:108:-7.3659,0,-15.7078	0/1:43:27,16:27:944:16:572:-38.8691,0,-72.3271	0/0:97:97,0:97:3449:0:0:0,-29.1999,-310.616	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:179:112,67:112:3980:67:2388:-161.291,0,-304.506	0/1:79:51,28:51:1828:28:993:-65.9011,0,-141.02	0/1:54:30,24:30:1072:24:847:-60.2931,0,-80.5368	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:109:109,0:109:3865:0:0:0,-32.8123,-348.044	0/0:147:144,3:144:5108:3:108:0,-34.1762,-449.791	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.097	0/1:21:11,10:11:375:10:360:-26.4227,0,-27.7562	0/1:81:64,17:64:2283:17:608:-30.6686,0,-181.348	0/0:126:126,0:126:4475:0:0:0,-37.9298,-402.92	0/0:86:85,0:85:2999:0:0:0,-25.5875,-269.781	0/0:164:164,0:164:5857:0:0:0,-49.3689,-527.241	0/0:38:38,0:38:1339:0:0:0,-11.4391,-120.809	0/0:77:76,1:76:2704:1:36:0,-19.581,-240.004	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:111:108,3:108:3851:3:108:0,-23.3392,-336.711	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/0:126:126,0:126:4472:0:0:0,-37.9298,-402.651	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/1:28:20,8:20:708:8:288:-17.8386,0,-55.6168	0/1:85:63,22:63:2252:22:788:-45.6572,0,-177.356	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.342	0/0:46:46,0:46:1626:0:0:0,-13.8474,-146.627	0/1:69:46,23:46:1635:23:824:-53.7107,0,-126.667	0/1:42:29,13:29:1013:13:449:-28.0951,0,-78.8359	0/0:17:17,0:17:586:0:0:0,-5.11751,-53.0628	0/0:82:82,0:82:2906:0:0:0,-24.6845,-261.772
chr04	26192283	.	C	G	44857.6	PASS	AB=0.461255;ABP=80.9176;AC=95;AF=0.505319;AN=188;AO=2776;CIGAR=1X;DP=6003;DPB=6003;DPRA=24.7047;EPP=6031.02;EPPR=6982.12;GTI=4;LEN=1;MEANALT=1.14286;MQM=59.9957;MQMR=60;NS=94;NUMALT=1;ODDS=0.178507;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99158;QR=114710;RO=3214;RPL=0;RPP=6031.02;RPPR=6982.12;RPR=2776;RUN=1;SAF=2776;SAP=6031.02;SAR=0;SRF=3214;SRP=6982.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:17,22:17:604:22:780:-58.7829,0,-42.9504	0/1:90:57,32:57:2036:32:1144:-76.1181,0,-156.361	0/1:66:30,36:30:1061:36:1254:-93.2917,0,-75.9314	0/1:78:45,32:45:1616:32:1140:-79.3702,0,-122.191	0/1:61:41,20:41:1468:20:716:-46.4049,0,-114.053	0/1:29:25,4:25:892:4:144:-4.58375,0,-71.8698	0/1:56:16,39:16:576:39:1388:-108.302,0,-35.2585	0/1:87:29,58:29:1032:58:2053:-158.85,0,-67.0039	0/1:82:55,27:55:1971:27:967:-62.6629,0,-152.98	0/1:81:45,36:45:1596:36:1277:-90.8477,0,-119.547	0/1:43:13,30:13:451:30:1068:-83.4878,0,-27.9755	0/1:79:49,30:49:1744:30:1067:-72.5598,0,-133.463	0/1:60:47,13:47:1671:13:468:-24.3978,0,-132.615	0/1:72:42,30:42:1479:30:1072:-75.1183,0,-111.73	0/1:44:33,11:33:1184:11:396:-22.7374,0,-93.623	0/1:36:18,18:18:640:18:644:-47.4535,0,-47.0922	0/1:58:45,12:45:1595:12:432:-21.7395,0,-126.36	0/1:18:9,9:9:320:9:320:-23.7238,0,-23.7238	0/1:21:6,15:6:212:15:536:-42.2532,0,-13.1032	0/1:67:29,38:29:1040:38:1364:-102.892,0,-73.7454	0/1:76:38,37:38:1352:37:1328:-96.9921,0,-99.1504	0/1:83:62,21:62:2220:21:752:-43.0208,0,-175.079	0/1:48:28,20:28:1000:20:720:-50.6793,0,-75.8659	0/1:104:41,63:41:1456:63:2247:-171.181,0,-100.029	0/1:93:56,36:56:1996:36:1292:-88.5292,0,-151.859	0/1:144:89,55:89:3184:55:1968:-134.047,0,-243.436	0/1:124:36,88:36:1296:88:3148:-246.218,0,-79.6162	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:108:52,56:52:1856:56:2012:-148.842,0,-134.809	0/1:64:28,36:28:1004:36:1273:-95.605,0,-71.4099	0/1:52:20,32:20:720:32:1140:-87.2556,0,-49.4752	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:2,6:2:68:6:208:-16.6508,0,-4.04947	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/1:5:2,3:2:64:3:108:-8.57002,0,-4.57354	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:186:124,61:124:4439:61:2177:-140.145,0,-343.63	0/1:88:57,31:57:2032:31:1104:-73.18,0,-156.662	0/1:58:26,32:26:936:32:1148:-86.1701,0,-67.0997	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:48:22,26:22:784:26:910:-67.7652,0,-56.4345	0/1:17:5,12:5:163:12:432:-34.1037,0,-9.87385	0/1:115:47,68:47:1668:68:2440:-185.236,0,-115.789	0/1:45:21,24:21:756:24:864:-64.5362,0,-54.8209	0/1:47:24,23:24:864:23:819:-59.8832,0,-63.9342	0/1:94:68,25:68:2436:25:892:-52.2442,0,-191.14	0/1:73:50,23:50:1784:23:828:-52.8689,0,-138.868	0/1:122:51,70:51:1832:70:2504:-188.828,0,-128.376	0/1:86:31,55:31:1092:55:1976:-152.226,0,-72.701	0/1:93:44,49:44:1584:49:1752:-129.968,0,-114.856	0/1:140:71,69:71:2536:69:2468:-180.23,0,-186.347	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:118:58,60:58:2076:60:2160:-159.145,0,-151.589	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:47:13,33:13:468:33:1188:-93.0214,0,-28.2524	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:27:7,20:7:252:20:720:-57.001,0,-14.9011	0/1:45:17,28:17:612:28:1008:-77.49,0,-41.8671	0/1:103:68,35:68:2432:35:1244:-81.2586,0,-188.13	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:65:38,27:38:1360:27:949:-66.1558,0,-103.134	0/1:150:54,96:54:1936:96:3432:-263.935,0,-129.362	0/1:44:29,15:29:1040:15:532:-34.9678,0,-80.669	0/1:30:20,10:20:716:10:360:-23.7134,0,-55.7368	0/1:101:61,40:61:2176:40:1436:-99.1336,0,-165.702	0/1:126:60,66:60:2144:66:2353:-174.097,0,-155.298	0/1:9:6,3:6:203:3:108:-7.3659,0,-15.8919	0/1:54:29,25:29:1032:25:896:-64.7047,0,-76.9379	0/1:142:76,65:76:2707:65:2309:-165.265,0,-201.069	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:95:34,61:34:1216:61:2180:-167.868,0,-81.1487	0/1:37:26,11:26:932:11:396:-24.8446,0,-73.0608	0/1:94:58,36:58:2076:36:1281:-87.2967,0,-158.814	0/1:65:50,15:50:1784:15:536:-29.0079,0,-141.276	0/1:68:48,20:48:1720:20:720:-44.6587,0,-134.615	0/1:59:47,12:47:1676:12:432:-21.4604,0,-133.366	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:71:50,21:50:1768:21:744:-45.9112,0,-138.03	0/1:64:29,35:29:1028:35:1256:-94.0794,0,-73.5671	0/1:196:109,87:109:3884:87:3104:-220.586,0,-290.754	0/1:115:84,31:84:2965:31:1104:-65.0522,0,-232.465	0/1:71:36,35:36:1296:35:1252:-91.6119,0,-95.5708	0/1:66:28,38:28:1000:38:1368:-103.553,0,-70.4474	0/1:138:59,78:59:2120:78:2792:-209.92,0,-149.468	0/1:47:28,18:28:1000:18:629:-42.728,0,-76.1083	0/1:86:59,27:59:2108:27:963:-61.0974,0,-164.101	0/1:55:39,16:39:1391:16:576:-35.6183,0,-108.932	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:39:21,18:21:735:18:644:-46.5504,0,-54.7312	0/1:24:13,11:13:455:11:379:-27.2158,0,-34.0572	0/1:70:28,42:28:1000:42:1508:-114.943,0,-69.2433	0/1:76:33,43:33:1184:43:1531:-115.204,0,-83.99
chr04	26192287	.	CTAT	CTTT	43546.1	PASS	AB=0.450876;ABP=128.67;AC=95;AF=0.505319;AN=188;AO=2723;CIGAR=2M1X1M;DP=6023;DPB=6023.25;DPRA=24.7871;EPP=5915.93;EPPR=7118.93;GTI=5;LEN=1;MEANALT=1.16484;MQM=59.9956;MQMR=59.9924;NS=94;NUMALT=1;ODDS=2.34793;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=18;PRO=0.5;QA=97253;QR=116573;RO=3281;RPL=0;RPP=5915.93;RPPR=7118.93;RPR=2723;RUN=1;SAF=2723;SAP=5915.93;SAR=0;SRF=3281;SRP=7127.61;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:18,21:18:640:21:744:-55.5442,0,-46.1891	0/1:90:58,31:58:2069:31:1116:-73.6002,0,-159.329	0/1:66:31,35:31:1103:35:1253:-93.2068,0,-79.7116	0/1:78:47,31:47:1670:31:1112:-76.911,0,-127.107	0/1:61:40,19:40:1439:19:669:-42.4638,0,-111.74	0/1:29:25,4:25:882:4:140:-4.21471,0,-70.9674	0/1:56:18,38:18:647:38:1355:-105.392,0,-41.704	0/1:88:29,59:29:1036:59:2116:-164.218,0,-67.0636	0/1:83:56,27:56:1986:27:955:-61.2802,0,-154.028	0/1:81:46,34:46:1617:34:1220:-85.6646,0,-121.375	0/1:42:13,28:13:461:28:1004:-77.9739,0,-29.1241	0/1:81:50,27:50:1773:27:952:-62.457,0,-136.313	0/1:60:47,13:47:1671:13:464:-24.0357,0,-132.615	0/1:72:44,28:44:1559:28:999:-68.5503,0,-118.927	0/1:44:33,11:33:1173:11:396:-22.7374,0,-92.632	0/1:36:18,18:18:627:18:648:-47.8148,0,-45.9171	0/1:59:45,14:45:1603:14:500:-27.5754,0,-126.799	0/1:18:9,9:9:318:9:324:-24.0873,0,-23.5418	0/1:20:6,14:6:216:14:496:-38.9537,0,-13.7699	0/1:65:30,35:30:1069:35:1241:-92.4256,0,-76.9551	0/1:75:38,37:38:1358:37:1315:-96.0738,0,-99.9434	0/1:82:62,20:62:2211:20:720:-40.4443,0,-174.571	0/1:48:29,19:29:1019:19:680:-47.0797,0,-77.5711	0/1:104:42,62:42:1488:62:2211:-167.943,0,-102.906	0/1:96:59,36:59:2072:36:1292:-87.6261,0,-157.792	0/1:146:92,54:92:3276:54:1921:-129.215,0,-251.11	0/1:123:36,87:36:1283:87:3124:-244.359,0,-78.7463	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:108:54,54:54:1912:54:1940:-142.365,0,-139.845	0/1:63:27,36:27:967:36:1292:-97.6189,0,-68.3824	0/1:52:21,31:21:755:31:1104:-84.0171,0,-52.6235	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:2,6:2:72:6:208:-16.6508,0,-4.42848	0/1:9:1,8:1:36:8:273:-22.1909,0,-0.889005	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:185:127,58:127:4545:58:2088:-132.44,0,-353.466	0/1:89:58,31:58:2043:31:1089:-71.5256,0,-157.349	0/1:57:27,30:27:963:30:1072:-79.6337,0,-69.8275	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:48:22,25:22:768:25:885:-65.5545,0,-55.0274	0/1:17:5,12:5:178:12:428:-33.7413,0,-11.2511	0/1:116:50,66:50:1765:66:2364:-178.099,0,-124.213	0/1:44:21,23:21:749:23:828:-61.5988,0,-54.4904	0/1:47:24,23:24:861:23:824:-60.3349,0,-63.6639	0/1:97:72,25:72:2550:25:892:-51.3998,0,-200.522	0/1:75:51,24:51:1786:24:856:-54.7839,0,-138.443	0/1:120:51,68:51:1788:68:2444:-184.032,0,-125.017	0/1:88:32,55:32:1126:55:1976:-151.565,0,-75.0975	0/1:94:44,50:44:1570:50:1773:-131.554,0,-113.294	0/1:140:72,68:72:2565:68:2418:-175.733,0,-188.955	0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863	0/1:119:59,60:59:2100:60:2137:-156.774,0,-153.447	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:7:5,2:5:174:2:72:-4.72951,0,-13.8944	0/1:46:14,32:14:502:32:1148:-89.7825,0,-31.6699	0/1:18:8,10:8:276:10:341:-25.5992,0,-19.7562	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:26:7,19:7:248:19:684:-54.0635,0,-14.8374	0/1:46:18,28:18:642:28:1004:-76.8285,0,-44.2627	0/1:108:72,36:72:2557:36:1287:-83.6216,0,-197.869	0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6992	0/1:67:41,26:41:1453:26:928:-63.6692,0,-110.897	0/1:148:53,94:53:1864:94:3357:-257.73,0,-123.427	0/1:43:28,14:28:985:14:504:-32.695,0,-75.9598	0/1:30:20,10:20:715:10:356:-23.3503,0,-55.6466	0/1:101:61,40:61:2164:40:1406:-96.4291,0,-164.619	0/1:129:63,66:63:2241:66:2364:-174.185,0,-163.12	0/1:10:6,4:6:210:4:144:-10.3033,0,-16.2314	0/1:57:30,27:30:1076:27:968:-70.2787,0,-79.9944	0/1:140:78,61:78:2786:61:2196:-155.81,0,-208.885	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:96:35,61:35:1247:61:2184:-167.927,0,-83.636	0/1:38:27,11:27:951:11:388:-23.8182,0,-74.4646	0/1:92:58,34:58:2062:34:1209:-81.4216,0,-158.156	0/1:66:49,15:49:1747:15:540:-29.3108,0,-137.889	0/1:68:49,19:49:1761:19:684:-41.4203,0,-138.304	0/1:58:46,12:46:1653:12:432:-21.7615,0,-131.599	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:72:51,21:51:1809:21:756:-46.6931,0,-141.417	0/1:64:30,34:30:1057:34:1199:-88.9474,0,-76.174	0/1:196:111,85:111:3942:85:3033:-214.197,0,-295.972	0/1:114:86,28:86:3037:28:996:-55.6369,0,-239.243	0/1:72:37,35:37:1324:35:1248:-90.9507,0,-97.7879	0/1:65:28,37:28:1003:37:1313:-98.9027,0,-71.019	0/1:138:61,77:61:2189:77:2743:-205.57,0,-155.734	0/1:46:28,18:28:997:18:644:-44.4432,0,-76.1971	0/1:88:59,29:59:2103:29:1036:-67.0633,0,-163.048	0/1:56:40,16:40:1428:16:572:-34.9557,0,-111.96	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:40:21,19:21:751:19:684:-49.8491,0,-55.8749	0/1:26:15,11:15:532:11:383:-26.9765,0,-40.3857	0/1:71:31,40:31:1083:40:1440:-108.525,0,-76.4033	0/1:75:33,41:33:1165:41:1476:-110.5,0,-82.5206
chr04	26192510	.	A	T	59657.1	PASS	AB=0.474751;ABP=45.8848;AC=93;AF=0.494681;AN=188;AO=3680;CIGAR=1X;DP=7761;DPB=7761;DPRA=12.0295;EPP=7994.03;EPPR=8851.76;GTI=4;LEN=1;MEANALT=1.05435;MQM=59.9622;MQMR=59.998;NS=94;NUMALT=1;ODDS=0.832559;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130292;QR=145935;RO=4075;RPL=3680;RPP=7994.03;RPPR=8851.76;RPR=0;RUN=1;SAF=0;SAP=7994.03;SAR=3680;SRF=0;SRP=8851.76;SRR=4075;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:17,43:17:612:43:1492:-116.509,0,-37.3516	0/1:66:55,11:55:1968:11:386:-15.2071,0,-157.527	0/1:174:100,74:100:3577:74:2614:-183.124,0,-269.756	0/1:223:149,74:149:5317:74:2621:-169.007,0,-411.535	0/1:72:48,24:48:1720:24:864:-56.4084,0,-133.411	0/1:28:20,8:20:716:8:288:-17.8386,0,-56.3389	0/1:61:31,30:31:1104:30:1035:-75.0908,0,-81.3063	0/1:104:33,70:33:1188:70:2480:-191.713,0,-75.8627	0/1:72:52,20:52:1841:20:697:-41.3765,0,-144.294	0/1:65:37,28:37:1320:28:985:-69.3937,0,-99.535	0/1:22:8,14:8:288:14:492:-37.9897,0,-19.6447	0/1:61:45,16:45:1620:16:576:-33.8122,0,-127.727	0/1:70:52,18:52:1868:18:644:-37.2185,0,-147.327	0/1:46:24,22:24:860:22:788:-57.3974,0,-63.8745	0/1:50:33,17:33:1188:17:612:-40.3619,0,-92.1771	0/1:35:9,26:9:324:26:928:-73.3022,0,-18.9698	0/1:26:17,9:17:612:9:312:-20.5886,0,-47.5867	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:123:77,46:77:2768:46:1652:-111.942,0,-212.334	0/1:115:37,78:37:1332:78:2777:-215.552,0,-85.5639	0/1:127:104,23:104:3717:23:813:-35.2583,0,-296.496	0/1:86:48,38:48:1724:38:1349:-95.8197,0,-129.557	0/1:59:22,37:22:792:37:1298:-99.3564,0,-53.8449	0/1:137:58,79:58:2076:79:2832:-213.877,0,-145.869	0/1:143:53,90:53:1900:90:3167:-242.206,0,-128.231	0/1:226:71,155:71:2556:155:5472:-424.577,0,-162.257	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	0/1:306:112,194:112:4012:194:6873:-526.516,0,-269.154	0/1:55:25,30:25:892:30:1053:-78.5219,0,-64.043	0/1:70:35,35:35:1260:35:1237:-90.5602,0,-92.6334	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:21:7,14:7:252:14:489:-38.0173,0,-16.7073	0/1:17:2,15:2:72:15:521:-42.0988,0,-1.71921	0/1:153:118,35:118:4240:35:1256:-67.2877,0,-335.72	0/1:146:96,50:96:3452:50:1777:-116.261,0,-266.941	0/1:37:22,15:22:792:15:536:-37.4367,0,-60.4676	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:93:44,49:44:1557:49:1699:-125.194,0,-112.424	0/1:16:8,8:8:288:8:273:-20.0837,0,-21.4509	0/1:211:59,151:59:2101:151:5366:-419.497,0,-125.782	0/1:39:16,23:16:572:23:828:-63.1039,0,-40.0733	0/1:57:32,25:32:1139:25:892:-63.441,0,-85.6597	0/1:96:54,42:54:1913:42:1463:-103.06,0,-143.547	0/1:118:76,42:76:2732:42:1462:-96.3465,0,-210.601	0/1:214:68,146:68:2417:146:5170:-401.019,0,-153.365	0/1:100:35,65:35:1256:65:2301:-177.247,0,-83.2423	0/1:88:64,24:64:2296:24:860:-51.2312,0,-180.41	0/1:160:76,84:76:2736:84:2962:-218.642,0,-198.317	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:315:168,146:168:6016:146:5135:-367.554,0,-446.81	0/1:45:24,21:24:856:21:711:-50.754,0,-63.8148	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:122:37,85:37:1316:85:2994:-232.943,0,-82.0161	0/1:24:6,18:6:216:18:636:-50.3433,0,-12.5658	0/1:14:6,8:6:216:8:272:-20.5948,0,-15.5761	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:42:23,19:23:828:19:665:-47.5295,0,-62.2009	0/1:97:66,31:66:2376:31:1108:-70.8311,0,-184.897	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:116:63,53:63:2245:53:1873:-133.928,0,-167.392	0/1:190:46,144:46:1648:144:5097:-401.676,0,-91.4128	0/1:28:13,15:13:464:15:525:-39.1492,0,-33.6687	0/1:55:33,20:33:1180:20:712:-48.0926,0,-90.1938	0/1:157:107,50:107:3832:50:1792:-114.301,0,-297.815	0/1:196:103,93:103:3681:93:3290:-237.317,0,-272.49	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:49:20,29:20:720:29:1040:-79.1639,0,-50.3783	0/1:69:30,39:30:1076:39:1388:-104.448,0,-76.3818	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:80:48,32:48:1716:32:1152:-79.9077,0,-130.643	0/1:76:47,29:47:1692:29:1021:-69.322,0,-129.689	0/1:146:75,71:75:2681:71:2521:-183.182,0,-197.583	0/1:137:101,36:101:3632:36:1266:-72.9975,0,-285.842	0/1:121:80,41:80:2842:41:1472:-96.3515,0,-219.591	0/1:90:64,26:64:2281:26:920:-56.0244,0,-178.458	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:111:82,29:82:2940:29:1040:-60.5,0,-231.42	0/1:146:100,46:100:3588:46:1588:-98.9812,0,-279.176	0/1:319:166,152:166:5940:152:5425:-392.292,0,-438.621	0/1:61:44,17:44:1580:17:608:-36.6892,0,-124.129	0/1:55:33,22:33:1188:22:792:-55.049,0,-90.6719	0/1:25:11,14:11:396:14:489:-36.8131,0,-28.457	0/1:79:27,52:27:959:52:1856:-143.538,0,-62.844	0/1:32:17,15:17:612:15:513:-36.8599,0,-45.7805	0/1:52:31,21:31:1116:21:756:-52.7137,0,-85.0981	0/1:41:33,8:33:1188:8:288:-13.9252,0,-94.8864	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:40:21,19:21:748:19:680:-49.488,0,-55.6041	0/1:26:12,14:12:428:14:500:-37.5094,0,-31.032	0/1:135:76,59:76:2720:59:2067:-145.657,0,-204.404	0/1:75:35,40:35:1243:40:1428:-106.24,0,-89.5966
chr04	26268144	.	CCTA	CCTC	15791.5	PASS	AB=0.489954;ABP=4.7119;AC=39;AF=0.209677;AN=186;AO=952;CIGAR=3M1X;DP=5085;DPB=5084.75;DPRA=0.850533;EPP=2035.65;EPPR=8649.55;GTI=2;LEN=1;MEANALT=1.225;MQM=60;MQMR=59.9951;NS=93;NUMALT=1;ODDS=0.0476798;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33920;QR=143867;RO=4101;RPL=4;RPP=2035.65;RPPR=8649.55;RPR=948;RUN=1;SAF=952;SAP=2070.25;SAR=0;SRF=4101;SRP=8908.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/0:53:53,0:53:1843:0:0:0,-15.9546,-166.149	0/0:83:83,0:83:2893:0:0:0,-24.9855,-260.609	0/0:82:82,0:82:2849:0:0:0,-24.6845,-256.648	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7941	0/0:42:39,0:39:1384:0:0:0,-11.7402,-124.499	0/1:100:43,57:43:1506:57:2032:-153.05,0,-105.728	0/1:55:29,26:29:1038:26:925:-67.0105,0,-77.1773	0/0:58:58,0:58:1996:0:0:0,-17.4597,-179.913	0/0:42:40,0:40:1411:0:0:0,-12.0412,-126.927	0/1:87:48,39:48:1697:39:1383:-98.5785,0,-126.824	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.767	0/0:55:55,0:55:1932:0:0:0,-16.5566,-174.155	0/0:112:110,0:110:3828:0:0:0,-33.1133,-344.362	0/0:47:47,0:47:1640:0:0:0,-14.1484,-147.886	0/1:38:14,24:14:501:24:856:-65.922,0,-33.9878	0/0:79:79,0:79:2785:0:0:0,-23.7814,-250.891	0/1:46:20,26:20:715:26:919:-69.1788,0,-50.8305	0/1:24:13,11:13:459:11:392:-28.3953,0,-34.4201	0/1:83:50,33:50:1734:33:1176:-81.1623,0,-131.357	0/1:78:31,46:31:1073:46:1648:-125.069,0,-73.3374	0/0:73:73,0:73:2522:0:0:0,-21.9752,-227.233	0/1:16:8,8:8:280:8:288:-21.4509,0,-20.7225	0/1:28:10,14:10:352:14:492:-37.0452,0,-24.4501	0/0:65:65,0:65:2264:0:0:0,-19.5669,-204.021	0/1:148:64,82:64:2245:82:2944:-220.898,0,-158.019	0/1:64:34,29:34:1180:29:1040:-74.5897,0,-87.1785	0/1:13:5,8:5:178:8:288:-22.354,0,-12.4553	0/0:116:114,0:114:4003:0:0:0,-34.3174,-360.105	0/1:55:27,28:27:913:28:999:-73.6679,0,-65.9209	0/1:55:34,21:34:1199:21:743:-50.6367,0,-91.6584	.:.:.:.:.:.:.:.	0/1:15:4,11:4:143:11:371:-29.1975,0,-8.70599	0/0:4:4,0:4:134:0:0:0,-1.20412,-12.3908	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:234:0:0:0,-2.10721,-21.3862	0/0:117:117,0:117:4158:0:0:0,-35.2205,-374.406	0/0:141:139,0:139:4891:0:0:0,-41.8432,-439.989	0/0:80:80,0:80:2809:0:0:0,-24.0824,-253.051	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:50:27,23:27:962:23:828:-59.7926,0,-71.8451	0/1:26:11,15:11:391:15:540:-41.1098,0,-27.7027	0/1:64:29,35:29:1016:35:1239:-92.5477,0,-72.4849	0/1:40:19,21:19:674:21:752:-55.9651,0,-48.9463	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.413	0/0:23:22,0:22:767:0:0:0,-6.62266,-68.9894	0/0:44:44,0:44:1547:0:0:0,-13.2453,-139.521	0/1:74:40,34:40:1378:34:1211:-87.0193,0,-102.038	0/1:73:46,27:46:1633:27:946:-63.4777,0,-125.283	0/0:57:56,0:56:1956:0:0:0,-16.8577,-175.955	0/0:66:66,0:66:2329:0:0:0,-19.868,-209.87	0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7598	0/0:57:57,0:57:1995:0:0:0,-17.1587,-179.821	0/1:16:8,8:8:278:8:288:-21.4509,0,-20.5408	0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4604	0/1:65:39,26:39:1364:26:928:-64.2713,0,-103.49	0/1:8:3,5:3:100:5:180:-14.1438,0,-6.92162	0/1:3:1,2:1:25:2:72:-5.93363,0,-1.59677	0/1:16:10,6:10:348:6:216:-14.974,0,-26.8382	0/1:48:27,21:27:957:21:756:-53.9178,0,-71.996	0/0:99:99,0:99:3473:0:0:0,-29.802,-312.785	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:62:38,24:38:1284:24:843:-57.5241,0,-97.1898	0/1:86:47,38:47:1673:38:1345:-95.5469,0,-125.056	0/1:60:37,23:37:1294:23:824:-56.4215,0,-98.6981	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.51	0/0:68:68,0:68:2359:0:0:0,-20.47,-212.568	0/0:70:70,0:70:2448:0:0:0,-21.0721,-220.573	0/0:18:18,0:18:624:0:0:0,-5.41854,-56.4832	0/0:46:46,0:46:1620:0:0:0,-13.8474,-146.089	0/0:75:75,0:75:2633:0:0:0,-22.5772,-237.218	0/1:16:8,8:8:282:8:288:-21.4509,0,-20.9046	0/1:64:20,44:20:690:44:1559:-121.335,0,-43.1521	0/0:39:37,0:37:1281:0:0:0,-11.1381,-115.23	0/0:86:86,0:86:3008:0:0:0,-25.8886,-270.955	0/0:47:46,1:46:1610:1:36:0,-10.5501,-141.59	0/0:163:162,0:162:5626:0:0:0,-48.7669,-506.102	0/0:57:57,0:57:2008:0:0:0,-17.1587,-180.993	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:62:62,0:62:2176:0:0:0,-18.6639,-196.106	0/0:79:77,0:77:2712:0:0:0,-23.1793,-243.967	0/0:110:110,0:110:3902:0:0:0,-33.1133,-351.378	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.912	0/0:64:64,0:64:2242:0:0:0,-19.2659,-202.042	0/1:31:20,11:20:715:11:388:-25.9249,0,-55.3459	0/1:84:51,33:51:1791:33:1188:-81.9421,0,-136.185	0/0:18:18,0:18:647:0:0:0,-5.41854,-58.5616	0/0:49:49,0:49:1738:0:0:0,-14.7505,-156.705	0/0:61:61,0:61:2163:0:0:0,-18.3628,-194.936	0/0:91:91,0:91:3175:0:0:0,-27.3937,-285.978	0/1:116:51,61:51:1789:61:2173:-161.761,0,-127.216	0/1:27:5,21:5:175:21:756:-60.1806,0,-7.90868	0/0:38:38,0:38:1334:0:0:0,-11.4391,-120.36	0/0:57:57,0:57:2018:0:0:0,-17.1587,-181.893
chr04	26285984	.	A	G	78129.7	PASS	AB=0.391185;ABP=976.049;AC=87;AF=0.472826;AN=184;AO=3701;CIGAR=1X;DP=9488;DPB=9488;DPRA=20.1384;EPP=7704.45;EPPR=11496.6;GTI=4;LEN=1;MEANALT=1.01149;MQM=59.4442;MQMR=59.4661;NS=92;NUMALT=1;ODDS=2.47385;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131541;QR=204879;RO=5786;RPL=1949;RPP=25.7805;RPPR=11513.2;RPR=1752;RUN=1;SAF=1988;SAP=47.3814;SAR=1713;SRF=5784;SRP=12549.8;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:17,5:17:608:5:180:-9.9294,0,-48.4294	0/1:160:121,39:121:4268:39:1392:-77.4142,0,-336.01	0/1:139:92,47:92:3255:47:1664:-108.202,0,-251.264	0/1:299:244,54:244:8633:54:1910:-82.1043,0,-686.694	0/1:53:45,8:45:1558:8:288:-10.3128,0,-124.549	0/1:61:44,17:44:1572:17:600:-35.9664,0,-123.409	0/1:62:37,25:37:1313:25:885:-61.3027,0,-99.6482	0/1:94:68,26:68:2405:26:928:-55.5056,0,-188.383	0/1:126:91,35:91:3229:35:1256:-75.4155,0,-252.903	0/1:178:133,45:133:4745:45:1593:-90.0511,0,-373.54	0/1:67:34,33:34:1212:33:1171:-85.3046,0,-89.2173	0/1:197:82,115:82:2921:115:4052:-305.529,0,-203.771	0/1:172:73,99:73:2608:99:3515:-264.783,0,-183.131	0/1:143:65,78:65:2312:78:2771:-206.205,0,-165.254	0/1:160:85,75:85:3040:75:2670:-192.323,0,-225.535	0/1:74:34,40:34:1216:40:1415:-105.362,0,-87.4255	0/1:188:82,106:82:2913:106:3764:-282.222,0,-205.431	0/1:142:67,75:67:2365:75:2676:-198.065,0,-170.257	0/1:39:17,22:17:604:22:792:-59.8621,0,-42.9504	0/1:78:57,21:57:2032:21:737:-43.1192,0,-159.672	0/1:97:67,30:67:2365:30:1076:-67.9171,0,-183.796	0/1:61:52,9:52:1820:9:324:-10.8704,0,-145.687	0/1:57:50,7:50:1743:7:252:-5.87025,0,-139.989	0/1:43:23,20:23:809:20:716:-51.8201,0,-60.1159	0/1:71:46,25:46:1617:25:877:-57.8362,0,-124.433	0/1:189:145,44:145:5093:44:1575:-85.0388,0,-401.506	0/1:124:75,49:75:2684:49:1714:-117.118,0,-204.455	0/1:39:19,20:19:680:20:720:-53.3886,0,-49.789	0/1:178:124,54:124:4436:54:1925:-119.846,0,-345.077	0/1:70:57,13:57:2024:13:464:-21.0254,0,-161.124	0/1:60:37,23:37:1305:23:828:-56.7781,0,-99.6592	.:.:.:.:.:.:.:.	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:397:176,221:176:6254:221:7910:-592.155,0,-443.399	0/1:149:131,18:131:4645:18:625:-11.7178,0,-373.164	0/1:108:56,52:56:1989:52:1840:-133.292,0,-146.753	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:91:73,18:73:2597:18:640:-30.5356,0,-206.561	0/1:36:22,14:22:775:14:504:-34.861,0,-59.2341	0/1:75:61,14:61:2116:14:504:-23.1208,0,-168.062	0/1:96:40,56:40:1420:56:1991:-150.501,0,-99.1848	0/1:174:71,103:71:2520:103:3635:-274.903,0,-174.312	0/1:90:52,38:52:1845:38:1352:-94.85,0,-139.19	0/1:154:120,34:120:4224:34:1192:-61.1879,0,-333.924	0/1:122:98,24:98:3474:24:860:-40.9677,0,-275.78	0/1:55:42,13:42:1481:13:464:-25.5261,0,-116.997	0/1:152:101,51:101:3585:51:1809:-117.214,0,-277.036	0/1:81:49,32:49:1722:32:1129:-77.4613,0,-130.751	0/1:9:5,4:5:168:4:144:-10.6043,0,-12.7417	0/1:104:71,33:71:2513:33:1177:-74.9266,0,-195.062	0/1:17:12,5:12:417:5:180:-11.4346,0,-32.7427	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:74:59,15:59:2100:15:516:-24.4512,0,-166.636	0/1:42:35,7:35:1245:7:248:-10.0209,0,-99.6465	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:45:32,13:32:1129:13:459:-28.0977,0,-88.3255	0/1:189:88,101:88:3128:101:3583:-265.642,0,-224.797	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:122:94,28:94:3326:28:995:-53.1366,0,-262.772	0/1:112:89,23:89:3114:23:824:-40.768,0,-246.544	0/1:55:43,12:43:1518:12:432:-22.6641,0,-120.285	0/1:75:58,17:58:2056:17:608:-32.4388,0,-162.639	0/1:157:113,44:113:3989:44:1568:-93.6291,0,-310.544	0/1:122:72,50:72:2527:50:1768:-122.559,0,-190.359	0/1:72:26,46:26:917:46:1624:-124.671,0,-61.1704	0/1:77:58,19:58:2068:19:675:-37.8976,0,-163.206	0/1:189:87,102:87:3100:102:3612:-268.208,0,-221.692	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:53:39,14:39:1369:14:503:-29.6242,0,-107.544	0/1:116:67,49:67:2373:49:1737:-121.693,0,-178.031	0/1:189:131,58:131:4648:58:2049:-127.653,0,-361.53	0/1:191:136,55:136:4812:55:1961:-119.231,0,-375.624	0/1:132:115,17:115:4029:17:604:-14.9546,0,-322.72	0/1:152:102,50:102:3573:50:1787:-115.283,0,-275.975	.:.:.:.:.:.:.:.	0/1:89:52,37:52:1838:37:1319:-92.1129,0,-138.905	0/1:78:50,28:50:1765:28:1004:-67.1955,0,-135.61	0/1:162:93,69:93:3270:69:2456:-172.408,0,-245.631	0/1:189:103,86:103:3664:86:3057:-218.427,0,-271.95	0/1:149:65,84:65:2320:84:2980:-223.541,0,-164.165	0/1:96:55,41:55:1968:41:1455:-102.282,0,-147.862	0/1:147:57,90:57:2012:90:3219:-245.652,0,-136.984	0/1:76:49,27:49:1729:27:964:-64.1627,0,-132.997	0/1:166:75,91:75:2668:91:3197:-237.761,0,-190.342	0/1:143:57,86:57:2040:86:3074:-233.47,0,-140.597	0/1:66:22,44:22:769:44:1565:-121.162,0,-49.6382	0/1:80:36,44:36:1292:44:1576:-117.948,0,-92.4565	0/1:39:14,25:14:496:25:896:-69.1843,0,-33.2341	0/1:151:91,60:91:3199:60:2121:-145.279,0,-242.585	0/1:283:116,167:116:4141:167:5951:-450.398,0,-287.254
chr04	26285999	.	TTGAA	CTGAA	258651	PASS	AB=0.722591;ABP=5895.06;AC=106;AF=0.56383;AN=188;AO=10515;CIGAR=1X4M;DP=14367;DPB=14369.2;DPRA=0;EPP=22749.3;EPPR=56.6872;GTI=16;LEN=1;MEANALT=1.60638;MQM=59.7058;MQMR=59.4234;NS=94;NUMALT=1;ODDS=0.606509;PAIRED=0;PAIREDR=0;PAO=3.5;PQA=121.5;PQR=0;PRO=4;QA=373744;QR=132542;RO=3788;RPL=5968;RPP=420.008;RPPR=8228.55;RPR=4547;RUN=1;SAF=5976;SAP=429.451;SAR=4539;SRF=2047;SRP=56.6872;SRR=1741;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:5,39:5:177:39:1387:-111.883,0,-3.03154	0/1:233:40,192:40:1407:192:6817:-543.297,0,-56.7381	0/1:209:49,160:49:1714:160:5706:-450.69,0,-91.6286	0/1:432:56,374:56:1989:374:13284:-1065.45,0,-49.4607	1/1:90:8,82:8:280:82:2902:-235.877,-1.55343,0	0/1:115:17,97:17:602:97:3459:-276.848,0,-19.8354	0/1:89:25,64:25:880:64:2279:-178.481,0,-52.7252	0/1:143:27,116:27:917:116:4135:-329.245,0,-39.7523	0/1:257:36,219:36:1285:219:7790:-624.068,0,-38.902	0/1:237:45,192:45:1566:192:6851:-545.188,0,-69.8704	0/1:100:33,67:33:1148:67:2404:-186.513,0,-73.2984	0/1:314:117,197:117:4117:197:6956:-531.534,0,-276.162	0/1:266:100,164:100:3516:164:5826:-444.624,0,-236.887	0/1:197:79,118:79:2782:118:4198:-318.654,0,-191.086	0/1:222:76,146:76:2680:146:5173:-398.736,0,-174.583	0/1:111:42,68:42:1474:68:2428:-185.315,0,-99.4996	0/1:224:108,116:108:3802:116:4116:-302.859,0,-274.763	0/1:165:75,90:75:2609:90:3188:-237.266,0,-185.246	0/1:62:23,39:23:814:39:1396:-107.275,0,-54.9148	0/1:110:21,89:21:726:89:3152:-250.792,0,-32.2389	0/1:145:33,111:33:1156:111:3930:-310.167,0,-60.6053	0/1:94:9,81:9:322:81:2896:-233.434,0,-1.60825	1/1:100:7,93:7:225:93:3310:-277.577,-9.6843,0	0/1:55:20,31:20:684:31:1097:-83.3413,0,-46.1822	0/1:137:25,111:25:878:111:3947:-314.116,0,-38.0043	0/1:256:46,207:46:1585:207:7346:-584.641,0,-66.419	0/1:196:50,146:50:1764:146:5216:-410.548,0,-99.9318	0/1:50:22,28:22:767:28:1004:-75.6244,0,-54.2982	0/1:255:55,196:55:1932:196:6951:-549.504,0,-98.2083	0/1:114:14,100:14:476:100:3573:-287.139,0,-8.84534	0/1:79:23,56:23:813:56:1992:-155.744,0,-49.7053	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:5:2,3:2:69:3:108:-8.57002,0,-5.04739	1/1:16:1,15:1:22:15:536:-46.3749,-2.61655,0	0/1:17:3,14:3:108:14:500:-40.2187,0,-4.95766	0/1:557:230,325:230:8073:325:11542:-871.287,0,-558.995	1/1:211:19,192:19:665:192:6756:-547.802,-3.37867,0	0/1:170:56,111:56:1923:111:3943:-304.446,0,-122.708	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:123:18,104:18:632:104:3705:-296.674,0,-20.2257	0/1:52:14,38:14:504:38:1364:-107.407,0,-30.0445	0/1:130:14,116:14:468:116:4149:-333.858,0,-3.30462	0/1:139:60,79:60:2105:79:2822:-212.37,0,-147.811	0/1:238:107,129:107:3709:129:4572:-340.093,0,-262.606	0/1:175:38,137:38:1331:137:4891:-387.615,0,-67.2777	0/1:235:34,198:34:1168:198:7013:-561.035,0,-35.2644	0/1:160:25,134:25:875:134:4782:-382.137,0,-30.8184	0/1:99:13,86:13:460:86:3046:-244.535,0,-11.924	0/1:203:53,149:53:1844:149:5327:-418.131,0,-104.946	0/1:140:34,105:34:1184:105:3754:-295.761,0,-64.6046	0/1:21:4,17:4:135:17:600:-48.002,0,-6.16148	0/1:170:33,137:33:1158:137:4887:-388.755,0,-53.3154	0/1:42:5,37:5:177:37:1313:-105.826,0,-3.6336	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	0/1:129:15,112:15:533:112:3990:-320.811,0,-9.78674	0/1:70:7,63:7:250:63:2247:-181.358,0,-1.77458	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:87:13,74:13:454:74:2660:-213.379,0,-15.0019	0/1:279:105,174:105:3644:174:6208:-474.774,0,-244.042	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:156:28,128:28:968:128:4556:-363.186,0,-40.4509	0/1:147:23,123:23:786:123:4385:-350.25,0,-26.7474	0/1:95:12,83:12:429:83:2931:-235.359,0,-10.3512	0/1:118:19,97:19:646:97:3416:-272.335,0,-23.1931	0/1:255:45,209:45:1588:209:7376:-586.827,0,-66.08	0/1:199:50,148:50:1745:148:5266:-413.862,0,-97.4156	0/1:117:46,71:46:1617:71:2495:-189.559,0,-110.524	0/1:144:19,124:19:676:124:4379:-350.96,0,-17.8466	0/1:245:103,142:103:3610:142:5020:-377.454,0,-251.142	0/1:20:5,15:5:178:15:536:-42.5542,0,-10.348	0/1:101:15,86:15:518:86:3050:-244.319,0,-16.5366	0/1:244:49,192:49:1693:192:6832:-541.739,0,-79.7532	0/1:293:60,231:60:2073:231:8192:-649.43,0,-98.8835	0/1:275:58,216:58:2027:216:7711:-611.092,0,-99.8363	1/1:212:18,193:18:619:193:6844:-559.785,-7.84251,0	0/1:229:51,178:51:1791:178:6324:-500.19,0,-92.4609	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:132:38,94:38:1311:94:3371:-263.869,0,-78.4611	0/1:102:29,73:29:1011:73:2603:-203.755,0,-60.5943	0/1:332:69,262:69:2456:262:9295:-736.369,0,-121.291	0/1:280:88,192:88:3061:192:6835:-530.361,0,-191.381	0/1:225:86,139:86:3039:139:4950:-377.787,0,-205.892	0/1:128:43,84:43:1474:84:2994:-230.825,0,-94.3125	0/1:193:90,102:90:3196:102:3611:-266.927,0,-229.69	0/1:97:27,70:27:943:70:2480:-194.235,0,-55.9811	0/1:223:92,130:92:3228:130:4600:-346.999,0,-223.417	0/1:222:88,132:88:3093:132:4715:-358.032,0,-211.746	0/1:106:44,62:44:1532:62:2224:-168.493,0,-106.156	0/1:130:44,86:44:1529:86:3073:-237.618,0,-98.6956	0/1:67:25,41:25:889:41:1455:-111.057,0,-60.1332	0/1:220:64,155:64:2227:155:5475:-426.533,0,-134.034	0/1:437:169,267:169:5939:267:9470:-720.437,0,-403.007
chr04	26367847	.	CGCA	TGCA,TGCG	155963	PASS	AB=0.500164,0.493294;ABP=3.01101,4.20436;AC=148,40;AF=0.787234,0.212766;AN=188;AO=5700,1523;CIGAR=1X3M,1X2M1X;DP=7279;DPB=7279;DPRA=17.5604,1.11686;EPP=12293.7,3292.81;EPPR=20.3821;GTI=0;LEN=1,4;MEANALT=1.95652,2.47727;MQM=59.9954,59.9961;MQMR=60;NS=94;NUMALT=2;ODDS=0.238791;PAIRED=0,0;PAIREDR=0;PAO=0.5,1.5;PQA=16,52;PQR=0;PRO=0;QA=203031,53099;QR=282;RO=8;RPL=10,2;RPP=12293.7,3292.81;RPPR=20.3821;RPR=5690,1521;RUN=1,1;SAF=0,0;SAP=12380.4,3310.16;SAR=5700,1523;SRF=0;SRP=20.3821;SRR=8;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:63:0,29,34:0:0:29,34:1040,1195:-182.449,-97.6196,-88.8897,-85.1845,0,-74.9495	1/1:76:0,76,0:0:0:76,0:2720,0:-245.043,-22.8783,0,-245.043,-22.8783,-245.043	1/1:138:1,135,0:1:36:135,0:4839,0:-432.084,-37.6917,0,-432.385,-40.6391,-435.323	1/1:237:1,234,0:1:36:234,0:8334,0:-746.497,-67.4853,0,-746.798,-70.441,-749.736	1/1:33:0,32,1:0:0:32,1:1136,36:-102.189,-9.63296,0,-99.2516,-6.33572,-98.9506	1/1:16:0,16,0:0:0:16,0:568,0:-51.4519,-4.81648,0,-51.4519,-4.81648,-51.4519	1/2:73:0,42,31:0:0:42,31:1487,1070:-208.406,-87.2745,-74.6312,-121.481,0,-112.149	1/2:109:0,61,48:0:0:61,48:2192,1686:-316.403,-137.575,-119.212,-179.183,0,-164.733	1/1:84:0,84,0:0:0:84,0:2980,0:-268.432,-25.2865,0,-268.432,-25.2865,-268.432	1/1:53:0,52,0:0:0:52,0:1868,0:-168.177,-15.6536,0,-168.177,-15.6536,-168.177	1/2:35:0,20,15:0:0:20,15:716,507:-99.8369,-41.4362,-35.4156,-58.7471,0,-54.2317	1/1:78:0,76,0:0:0:76,0:2711,0:-243.874,-22.8783,0,-243.874,-22.8783,-243.874	1/1:57:0,57,0:0:0:57,0:2031,0:-183.062,-17.1587,0,-183.062,-17.1587,-183.062	1/1:31:0,30,0:0:0:30,0:1072,0:-96.4327,-9.0309,0,-96.4327,-9.0309,-96.4327	1/1:54:1,52,0:1:30:52,0:1859,0:-164.612,-13.23,0,-164.913,-15.6536,-167.311	1/2:50:0,22,28:0:0:22,28:784,984:-144.35,-80.4433,-73.8206,-64.2613,0,-55.8324	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:29:0,29,0:0:0:29,0:1032,0:-93.1935,-8.72987,0,-93.1935,-8.72987,-93.1935	1/2:39:0,23,16:0:0:23,16:828,560:-113.478,-45.912,-38.9883,-67.9204,0,-63.1039	1/2:193:0,115,77:0:0:115,77:4098,2687:-552.572,-218.537,-183.919,-334.027,0,-310.848	1/2:147:0,73,74:0:0:73,74:2587,2580:-420.928,-210.174,-188.199,-211.105,0,-188.829	1/1:152:0,152,0:0:0:152,0:5387,0:-484.961,-45.7566,0,-484.961,-45.7566,-484.961	1/2:142:2,69,71:2:72:69,71:2451,2504:-397.122,-198.004,-183.108,-193.839,0,-178.341	1/2:86:0,45,41:0:0:45,41:1603,1448:-248.931,-118.272,-104.726,-131.013,0,-118.671	1/1:66:0,66,0:0:0:66,0:2358,0:-212.478,-19.868,0,-212.478,-19.868,-212.478	1/2:202:0,83,118:0:0:83,118:2921,4056:-567.231,-329.437,-304.451,-237.861,0,-202.34	1/2:194:0,92,100:0:0:92,100:3292,3510:-554.166,-285.715,-258.02,-268.508,0,-238.405	1/2:17:0,9,8:0:0:9,8:324,288:-50.2959,-23.8592,-21.1499,-26.7966,0,-24.3883	1/1:222:0,220,1:0:0:220,1:7819,36:-703.384,-66.2266,0,-700.447,-63.2892,-700.146	1/2:134:0,77,55:0:0:77,55:2732,1881:-375.338,-152.739,-129.559,-222.677,0,-206.12	1/2:116:0,49,67:0:0:49,67:1756,2354:-334.808,-191.59,-176.839,-143.214,0,-123.045	2/2:6:0,0,6:0:0:0,6:0,210:-19.242,-19.242,-19.242,-1.80618,-1.80618,0	1/2:8:0,2,6:0:0:2,6:72,207:-23.0398,-17.1612,-16.5592,-6.23466,0,-4.42848	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:164:0,164,0:0:0:164,0:5834,0:-525.176,-49.3689,0,-525.176,-49.3689,-525.176	1/1:145:0,143,0:0:0:143,0:5116,0:-460.253,-43.0473,0,-460.253,-43.0473,-460.253	1/1:36:0,36,0:0:0:36,0:1288,0:-116.224,-10.8371,0,-116.224,-10.8371,-116.224	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:104:0,46,57:0:0:46,57:1631,2009:-296.551,-163.673,-149.826,-132.978,0,-115.82	1/2:18:0,8,10:0:0:8,10:288,357:-52.9626,-29.462,-27.0537,-23.8592,0,-20.8489	1/2:104:0,46,56:0:0:46,56:1628,1943:-290.607,-157.995,-144.148,-132.672,0,-115.814	1/2:28:0,14,14:0:0:14,14:500,487:-80.7146,-39.9452,-35.7307,-41.1218,0,-36.9073	1/1:46:0,46,0:0:0:46,0:1629,0:-146.897,-13.8474,0,-146.897,-13.8474,-146.897	1/1:103:0,102,0:0:0:102,0:3622,0:-325.904,-30.7051,0,-325.904,-30.7051,-325.904	1/1:119:0,119,0:0:0:119,0:4241,0:-381.87,-35.8226,0,-381.87,-35.8226,-381.87	1/2:153:0,78,74:0:0:78,74:2800,2593:-439.388,-210.983,-187.503,-228.399,0,-206.123	1/2:74:0,37,37:0:0:37,37:1320,1293:-213.142,-105.531,-94.3931,-107.964,0,-96.8257	1/1:89:0,89,0:0:0:89,0:3192,0:-287.503,-26.7917,0,-287.503,-26.7917,-287.503	1/1:112:0,110,0:0:0:110,0:3927,0:-353.317,-33.1133,0,-353.317,-33.1133,-353.317	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:157:0,156,0:0:0:156,0:5550,0:-499.334,-46.9607,0,-499.334,-46.9607,-499.334	1/2:65:0,37,28:0:0:37,28:1324,978:-187.874,-79.9033,-68.7652,-108.324,0,-99.8951	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:141:0,72,69:0:0:72,69:2565,2381:-402.85,-193.776,-172.102,-209.424,0,-188.653	1/2:80:1,52,26:1:36:52,26:1851,899:-220.664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chr04	26385407	.	T	A	72912.6	PASS	AB=0.465341;ABP=21.374;AC=149;AF=0.792553;AN=188;AO=3397;CIGAR=1X;DP=4344;DPB=4344;DPRA=0;EPP=7379.5;EPPR=2057.22;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9873;MQMR=59.9429;NS=94;NUMALT=1;ODDS=2.37833;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121515;QR=33813;RO=946;RPL=0;RPP=7379.5;RPPR=2057.22;RPR=3397;RUN=1;SAF=3397;SAP=7379.5;SAR=0;SRF=946;SRP=2057.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:12,6:12:424:6:216:-14.372,0,-33.0779	1/1:51:0,51:0:0:51:1821:-164.169,-15.3525,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:27:1,26:1:36:26:921:-79.6069,-4.52954,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:65:35,30:35:1247:30:1072:-77.2255,0,-92.9671	0/1:69:43,26:43:1540:26:920:-62.346,0,-118.122	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:23:11,12:11:392:12:414:-30.665,0,-28.6964	1/1:40:0,40:0:0:40:1425:-128.545,-12.0412,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:39:22,17:22:788:17:612:-43.6733,0,-59.5046	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:58:40,18:40:1432:18:644:-40.8309,0,-111.718	0/1:72:33,39:33:1180:39:1385:-103.272,0,-84.8339	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:27:16,11:16:564:11:396:-27.8549,0,-42.9625	0/1:27:13,14:13:464:14:496:-36.8464,0,-33.9697	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	0/1:171:65,106:65:2328:106:3804:-291.081,0,-158.304	0/1:96:58,38:58:2084:38:1368:-94.522,0,-158.931	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	1/1:167:1,166:1:36:166:5952:-532.188,-46.6737,0	0/1:44:23,21:23:824:21:752:-54.7609,0,-61.238	0/1:45:28,17:28:1004:17:604:-41.1443,0,-77.1295	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	1/1:97:0,97:0:0:97:3457:-311.342,-29.1999,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:64:40,24:40:1428:24:864:-58.8166,0,-109.552	0/1:32:14,18:14:504:18:648:-49.0189,0,-36.0651	0/1:57:26,31:26:936:31:1108:-82.8723,0,-67.1303	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4876	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:49:0,49:0:0:49:1745:-157.332,-14.7505,0	0/1:101:57,44:57:2017:44:1565:-110.736,0,-151.397	0/1:54:26,28:26:928:28:1004:-74.4202,0,-67.5826	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:59:37,22:37:1313:22:792:-53.8403,0,-100.709	0/1:27:20,7:20:701:7:252:-14.9011,0,-55.2839	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:28:16,12:16:567:12:432:-30.7924,0,-42.9319	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:77:35,42:35:1260:42:1482:-110.491,0,-90.5262	0/1:86:47,39:47:1680:39:1389:-99.4184,0,-125.599	0/1:35:21,14:21:756:14:504:-35.162,0,-57.8312	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:81:1,80:1:36:80:2838:-252.058,-20.7852,0	1/1:35:0,35:0:0:35:1245:-112.353,-10.5361,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:40:0,40:0:0:40:1390:-125.393,-12.0412,0	1/1:58:0,58:0:0:58:2076:-187.11,-17.4597,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:81:48,33:48:1716:33:1169:-81.1319,0,-130.286	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:72:0,72:0:0:72:2576:-232.089,-21.6742,0	1/1:55:1,54:1:36:54:1917:-169.206,-12.9584,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:28:0,28:0:0:28:993:-89.6825,-8.42884,0	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	1/1:99:0,98:0:0:98:3516:-316.272,-29.5009,0	1/1:69:1,68:1:36:68:2432:-215.537,-17.1728,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:36:17,19:17:604:19:680:-50.6921,0,-43.8535	0/1:67:27,40:27:972:40:1436:-109.369,0,-67.6289	1/1:37:0,37:0:0:37:1323:-119.364,-11.1381,0	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:52:22,30:22:784:30:1078:-81.6796,0,-55.2285	0/1:37:26,11:26:932:11:392:-24.4819,0,-73.0608	1/1:34:0,34:0:0:34:1201:-108.393,-10.235,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0
chr04	26385415	.	A	G	16289.9	PASS	AB=0.539205;ABP=26.5066;AC=39;AF=0.207447;AN=188;AO=956;CIGAR=1X;DP=4311;DPB=4311;DPRA=0.974496;EPP=2035.74;EPPR=7184.44;GTI=0;LEN=1;MEANALT=1;MQM=59.9383;MQMR=59.9872;NS=94;NUMALT=1;ODDS=1.89296;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34087;QR=118865;RO=3355;RPL=4;RPP=2044.34;RPPR=7193.07;RPR=952;RUN=1;SAF=955;SAP=2070.26;SAR=1;SRF=3354;SRP=7279.62;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433	0/0:82:82,0:82:2888:0:0:0,-24.6845,-260.152	0/0:27:26,1:26:932:1:36:0,-4.52953,-80.6006	0/0:34:34,0:34:1182:0:0:0,-10.235,-106.681	0/1:64:30,34:30:1080:34:1180:-87.2346,0,-78.2473	0/1:69:27,42:27:945:42:1500:-114.523,0,-64.5912	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/0:47:46,1:46:1648:1:36:0,-10.5501,-145.01	0/1:22:11,11:11:392:11:392:-28.9974,0,-28.9974	0/0:37:35,2:35:1241:2:72:0,-4.30139,-105.152	0/0:39:39,0:39:1389:0:0:0,-11.7402,-125.307	0/0:31:31,0:31:1071:0:0:0,-9.33193,-96.6917	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:39:16,23:16:557:23:824:-62.7431,0,-38.7154	0/0:29:29,0:29:1014:0:0:0,-8.72987,-91.5675	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:58:18,40:18:644:40:1440:-112.438,0,-40.8309	0/1:71:38,33:38:1349:33:1169:-84.1422,0,-100.335	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:28:11,17:11:396:17:589:-44.9045,0,-27.5539	0/1:27:14,13:14:489:13:468:-34.3318,0,-36.2111	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:169:101,68:101:3579:68:2424:-167.537,0,-271.441	0/1:94:37,57:37:1313:57:2025:-154.224,0,-90.1729	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	0/0:163:163,0:163:5795:0:0:0,-49.0679,-521.662	0/1:43:20,23:20:690:23:813:-60.5448,0,-49.4725	0/1:47:18,29:18:629:29:1040:-79.766,0,-42.7854	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:21:0:0:0,-0.30103,-2.09995	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:98:98,0:98:3437:0:0:0,-29.5009,-309.54	0/0:32:31,1:31:1101:1:36:0,-6.03468,-95.8001	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:65:24,41:24:856:41:1472:-113.209,0,-57.7942	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/1:58:33,25:33:1169:25:900:-63.5908,0,-88.0555	0/1:31:12,19:12:428:19:680:-52.1972,0,-29.5269	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:76:76,0:76:2683:0:0:0,-22.8783,-241.711	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.382	0/1:97:41,56:41:1453:56:1997:-150.803,0,-101.864	0/1:56:29,27:29:1013:27:959:-69.7669,0,-74.6217	0/0:53:53,0:53:1877:0:0:0,-15.9546,-169.207	0/0:83:83,0:83:2957:0:0:0,-24.9855,-266.362	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:16:16,0:16:523:0:0:0,-4.81648,-47.3783	0/1:60:22,38:22:777:38:1364:-104.999,0,-52.1839	0/1:26:6,20:6:201:20:705:-55.946,0,-10.5903	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:29:12,17:12:428:17:595:-45.146,0,-30.1289	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:76:40,36:40:1391:36:1296:-94.0657,0,-102.603	0/1:84:37,47:37:1301:47:1684:-126.56,0,-92.1027	0/1:36:15,21:15:510:21:756:-57.5301,0,-35.3825	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:79:78,1:78:2725:1:36:0,-20.1831,-241.889	0/0:36:36,0:36:1254:0:0:0,-10.8371,-113.158	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:39:39,0:39:1381:0:0:0,-11.7402,-124.587	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.306	0/1:5:1,4:1:36:4:129:-10.4225,0,-2.09312	0/1:81:34,47:34:1194:47:1684:-127.408,0,-83.3778	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.229	0/0:54:53,1:53:1893:1:36:0,-12.6573,-167.048	0/0:74:74,0:74:2592:0:0:0,-22.2762,-233.524	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/1:7:4,3:4:114:3:104:-7.5956,0,-8.4345	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.477	0/0:36:36,0:36:1266:0:0:0,-10.8371,-114.239	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.463	0/0:69:69,0:69:2442:0:0:0,-20.7711,-220.032	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/1:38:21,17:21:744:17:612:-43.9743,0,-55.8452	0/1:70:40,30:40:1417:30:1046:-73.3754,0,-106.753	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.649	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.985	0/0:38:38,0:38:1289:0:0:0,-11.4391,-116.299	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/1:50:29,21:29:1044:21:756:-53.3157,0,-79.2233	0/1:40:11,29:11:392:29:1040:-81.8732,0,-23.5789	0/0:35:35,0:35:1236:0:0:0,-10.536,-111.544	0/0:65:65,0:65:2310:0:0:0,-19.5669,-208.157
chr04	26387423	.	CG	AG	142958	PASS	AB=0.454278;ABP=77.0762;AC=146;AF=0.784946;AN=186;AO=6737;CIGAR=1X1M;DP=9010;DPB=9010.5;DPRA=11.6264;EPP=14632.2;EPPR=4886.65;GTI=2;LEN=1;MEANALT=1.23077;MQM=59.9688;MQMR=59.9884;NS=93;NUMALT=1;ODDS=0.663242;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=16;PQR=0;PRO=0;QA=241159;QR=79871;RO=2249;RPL=6737;RPP=14632.2;RPPR=4886.65;RPR=0;RUN=1;SAF=0;SAP=14632.2;SAR=6737;SRF=0;SRP=4886.65;SRR=2249;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:33,19:33:1167:19:669:-44.8804,0,-89.6743	1/1:45:1,44:1:36:44:1574:-138.353,-9.94808,0	1/1:126:1,123:1:36:123:4408:-393.276,-34.0893,0	1/1:277:0,275:0:0:275:9825:-883.89,-82.7833,0	1/1:51:0,51:0:0:51:1836:-165.492,-15.3525,0	1/1:39:0,36:0:0:36:1292:-116.224,-10.8371,0	0/1:149:79,70:79:2821:70:2516:-181.833,0,-209.275	0/1:127:83,44:83:2933:44:1580:-104.261,0,-225.973	1/1:105:0,105:0:0:105:3772:-339.678,-31.6082,0	1/1:105:0,104:0:0:104:3677:-330.773,-31.3071,0	0/1:64:34,30:34:1220:30:1076:-77.8807,0,-90.8411	1/1:146:0,146:0:0:146:5248:-472.454,-43.9504,0	1/1:125:0,125:0:0:125:4480:-403.369,-37.6288,0	1/1:94:0,94:0:0:94:3380:-304.414,-28.2968,0	1/1:112:0,111:0:0:111:3974:-357.403,-33.4143,0	0/1:78:45,33:45:1611:33:1180:-83.0277,0,-121.8	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:42:24,18:24:864:18:648:-46.0086,0,-65.4389	0/1:114:65,49:65:2309:49:1752:-123.647,0,-173.752	0/1:153:76,76:76:2671:76:2720:-198.927,0,-194.516	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	0/1:129:80,49:80:2855:49:1756:-119.491,0,-218.355	0/1:93:51,42:51:1819:42:1501:-107.389,0,-135.994	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:319:184,133:184:6507:133:4767:-333.399,0,-489.931	0/1:265:123,142:123:4395:142:5098:-379.189,0,-315.951	0/1:49:22,27:22:790:27:972:-73.0474,0,-56.6749	1/1:258:1,257:1:36:257:9178:-822.391,-74.0675,0	0/1:88:48,40:48:1710:40:1440:-103.277,0,-127.694	0/1:106:53,52:53:1884:52:1872:-136.791,0,-137.869	0/1:9:7,2:7:239:2:72:-4.12745,0,-19.1332	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:23:-2.29986,-0.30103,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:263:1,260:1:36:260:9324:-835.561,-75.3121,0	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	.:.:.:.:.:.:.:.	0/1:138:65,73:65:2299:73:2620:-194.505,0,-165.627	0/1:38:22,16:22:783:16:576:-40.7358,0,-59.3538	0/1:103:56,47:56:1964:47:1677:-120.209,0,-146.026	0/1:106:52,53:52:1849:53:1900:-139.31,0,-134.722	1/1:85:0,85:0:0:85:3040:-273.829,-25.5876,0	1/1:67:0,67:0:0:67:2384:-214.818,-20.169,0	1/1:69:0,69:0:0:69:2444:-220.214,-20.7711,0	0/1:261:131,129:131:4609:129:4586:-334.147,0,-336.343	0/1:116:64,51:64:2255:51:1813:-128.471,0,-168.232	1/1:106:0,106:0:0:106:3808:-342.916,-31.9092,0	1/1:137:0,137:0:0:137:4908:-441.87,-41.2411,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:48:0,48:0:0:48:1720:-155.077,-14.4494,0	0/1:106:71,35:71:2529:35:1248:-80.7157,0,-195.952	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:101:41,60:41:1437:60:2140:-162.464,0,-99.2187	0/1:52:27,25:27:966:25:892:-64.9461,0,-71.6013	0/1:14:10,4:10:358:4:140:-8.73016,0,-28.3485	0/0:7:7,0:7:250:0:0:0,-2.10721,-22.8467	0/1:79:54,25:54:1913:25:900:-57.5396,0,-148.663	1/1:115:2,113:2:72:113:4060:-358.746,-27.7817,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:249:117,132:117:4169:132:4702:-348.384,0,-300.435	0/1:134:75,59:75:2684:59:2120:-150.671,0,-201.408	0/1:64:32,31:32:1142:31:1101:-80.0738,0,-83.7643	1/1:51:0,51:0:0:51:1824:-164.44,-15.3525,0	1/1:152:0,152:0:0:152:5451:-490.713,-45.7566,0	1/1:120:0,120:0:0:120:4293:-386.543,-36.1236,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:63:1,62:1:36:62:2224:-196.826,-15.3666,0	1/1:75:0,74:0:0:74:2660:-239.325,-22.2762,0	0/1:13:10,3:10:354:3:108:-6.16178,0,-28.2864	0/1:158:91,67:91:3249:67:2385:-167.343,0,-245.069	1/1:108:0,107:0:0:107:3824:-343.998,-32.2102,0	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	1/1:175:0,175:0:0:175:6261:-563.578,-52.6803,0	1/1:50:1,49:1:36:49:1756:-154.725,-11.4532,0	1/1:114:6,108:6:216:108:3852:-327.049,-14.5269,0	0/0:10:10,0:10:358:0:0:0,-3.0103,-32.5629	1/1:95:1,94:1:36:94:3368:-299.738,-24.9996,0	1/1:62:0,61:0:0:61:2184:-196.574,-18.3628,0	1/1:206:0,205:0:0:205:7311:-657.787,-61.7112,0	1/1:60:0,60:0:0:60:2148:-193.501,-18.0618,0	1/1:109:0,109:0:0:109:3907:-351.822,-32.8123,0	0/1:61:28,32:28:1006:32:1152:-85.5685,0,-72.4346	0/1:188:106,82:106:3744:82:2919:-206.351,0,-280.567	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:102:0,102:0:0:102:3647:-328.434,-30.7051,0	1/1:94:0,94:0:0:94:3363:-302.885,-28.2968,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:109:60,49:60:2141:49:1764:-126.231,0,-160.144	0/1:152:98,54:98:3477:54:1934:-128.58,0,-267.385	1/1:123:0,123:0:0:123:4416:-397.611,-37.0267,0	1/1:190:0,190:0:0:190:6807:-612.694,-57.1957,0
chr04	26399889	.	TAATGG	TAACGC,TAATGC	172010	PASS	AB=0.482769,0.509069;ABP=11.5413,5.37345;AC=143,41;AF=0.777174,0.222826;AN=184;AO=6269,1694;CIGAR=3M1X1M1X,5M1X;DP=8013;DPB=8013;DPRA=89.0111,1.02195;EPP=13616,3681.48;EPPR=0;GTI=0;LEN=6,1;MEANALT=1.95556,2.45652;MQM=59.5647,59.9906;MQMR=0;NS=92;NUMALT=2;ODDS=1.73578;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=222450,60556;QR=0;RO=0;RPL=6269,1694;RPP=13616,3681.48;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13616,3681.48;SAR=6269,1694;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:29:0,8,21:0:0:8,21:274,756:-84.2816,-62.0456,-59.6374,-22.5832,0,-16.2615	1/1:157:0,157,0:0:0:157,0:5577,0:-501.271,-47.2617,0,-501.271,-47.2617,-501.271	1/1:81:0,81,0:0:0:81,0:2851,0:-256.819,-24.3834,0,-256.819,-24.3834,-256.819	1/1:135:0,134,0:0:0:134,0:4787,0:-430.625,-40.338,0,-430.625,-40.338,-430.625	1/1:35:0,35,0:0:0:35,0:1222,0:-110.075,-10.5361,0,-110.075,-10.5361,-110.075	1/1:17:0,17,0:0:0:17,0:602,0:-54.4999,-5.11751,0,-54.4999,-5.11751,-54.4999	1/2:69:0,27,42:0:0:27,42:964,1497:-200.971,-122.379,-114.251,-78.9483,0,-66.305	1/2:135:0,46,86:0:0:46,86:1648,3088:-386.304,-251.909,-238.062,-134.404,0,-108.515	1/1:57:0,57,0:0:0:57,0:2017,0:-181.792,-17.1587,0,-181.792,-17.1587,-181.792	1/1:79:0,76,2:0:0:76,2:2712,72:-243.954,-22.8783,0,-238.079,-16.9235,-237.477	1/2:107:0,54,51:0:0:54,51:1906,1824:-303.962,-148.767,-132.512,-155.228,0,-139.875	1/1:76:0,75,0:0:0:75,0:2663,0:-239.483,-22.5773,0,-239.483,-22.5773,-239.483	1/1:58:0,58,0:0:0:58,0:2068,0:-186.381,-17.4597,0,-186.381,-17.4597,-186.381	1/1:123:0,121,0:0:0:121,0:4261,0:-383.192,-36.4246,0,-383.192,-36.4246,-383.192	1/1:66:0,66,0:0:0:66,0:2361,0:-212.747,-19.868,0,-212.747,-19.868,-212.747	1/2:77:0,50,27:0:0:50,27:1755,964:-221.713,-78.9467,-63.8952,-143.121,0,-134.993	1/1:89:0,89,0:0:0:89,0:3145,0:-283.26,-26.7917,0,-283.26,-26.7917,-283.26	1/1:73:0,72,0:0:0:72,0:2551,0:-229.458,-21.6742,0,-229.458,-21.6742,-229.458	1/2:76:0,36,40:0:0:36,40:1287,1440:-222.786,-117.857,-107.019,-105.288,0,-93.2472	1/2:98:0,32,65:0:0:32,65:1123,2332:-281.594,-190.21,-180.577,-91.3778,0,-71.8108	1/2:115:0,58,57:0:0:58,57:2070,2048:-336.067,-167.433,-149.973,-168.992,0,-151.833	1/1:44:0,43,1:0:0:43,1:1530,36:-137.632,-12.9443,0,-134.695,-9.64705,-134.394	1/2:59:0,25,34:0:0:25,34:884,1209:-170.767,-98.8791,-91.3534,-72.2415,0,-62.0065	1/2:88:0,32,55:0:0:32,55:1134,1961:-252.277,-159.925,-150.292,-92.4238,0,-75.8671	1/1:48:0,48,0:0:0:48,0:1688,0:-152.174,-14.4494,0,-152.174,-14.4494,-152.174	1/2:226:0,116,108:0:0:116,108:4086,3872:-648.485,-315.843,-280.923,-332.677,0,-300.166	1/2:156:0,90,65:0:0:90,65:3166,2321:-446.691,-189.259,-162.166,-257.466,0,-237.899	1/2:32:0,19,13:0:0:19,13:682,466:-93.9403,-38.3653,-32.6457,-55.9333,0,-52.0199	1/1:212:0,210,1:0:0:210,1:7486,36:-673.433,-63.2163,0,-670.495,-60.2639,-670.194	1/2:136:0,72,63:0:0:72,63:2554,2256:-391.907,-183.981,-162.307,-207.925,0,-188.96	1/2:106:0,50,55:0:0:50,55:1752,1972:-303.364,-160.838,-145.787,-142.52,0,-125.963	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:4:0,1,2:0:0:1,2:36,72:-8.81461,-5.87693,-5.5759,-2.93899,0,-2.33693	.:.:.:.:.:.:.:.	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:9:0,8,0:0:0:8,0:271,0:-24.3611,-2.40824,0,-24.3611,-2.40824,-24.3611	1/1:201:0,200,0:0:0:200,0:7146,0:-642.833,-60.206,0,-642.833,-60.206,-642.833	1/1:162:0,162,0:0:0:162,0:5732,0:-515.705,-48.7669,0,-515.705,-48.7669,-515.705	1/1:118:0,117,1:0:0:117,1:4170,36:-375.085,-35.2205,0,-372.148,-31.9233,-371.847	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:152:0,70,81:0:0:70,81:2503,2863:-437.251,-233.24,-212.168,-204.086,0,-179.702	1/2:56:0,30,26:0:0:30,26:1070,936:-163.896,-76.7327,-67.7018,-87.5217,0,-79.6949	1/2:46:0,21,25:0:0:21,25:740,900:-133.785,-73.7953,-67.4736,-60.3448,0,-52.8191	1/2:108:0,53,51:0:0:53,51:1890,1798:-300.455,-146.387,-130.432,-154.064,0,-138.711	1/1:71:0,70,0:0:0:70,0:2468,0:-222.05,-21.0721,0,-222.05,-21.0721,-222.05	1/1:69:0,68,1:0:0:68,1:2426,36:-217.745,-20.47,0,-214.807,-17.1728,-214.506	1/1:140:0,140,0:0:0:140,0:4967,0:-447.142,-42.1442,0,-447.142,-42.1442,-447.142	1/2:168:0,87,79:0:0:87,79:3115,2824:-484.315,-230.314,-204.125,-254.057,0,-230.275	1/2:69:0,25,44:0:0:25,44:883,1525:-196.2,-124.29,-116.764,-72.2605,0,-59.0152	1/1:154:0,152,0:0:0:152,0:5390,0:-484.891,-45.7566,0,-484.891,-45.7566,-484.891	1/1:51:0,51,0:0:0:51,0:1814,0:-163.538,-15.3525,0,-163.538,-15.3525,-163.538	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/1:139:0,138,1:0:0:138,1:4876,36:-438.575,-41.5421,0,-435.638,-38.2449,-435.337	1/2:29:0,7,22:0:0:7,22:252,792:-85.5449,-64.983,-62.8758,-20.9217,0,-14.2991	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:126:0,68,58:0:0:68,58:2415,2069:-365.764,-169.019,-148.549,-197.101,0,-179.641	1/2:40:0,26,14:0:0:26,14:920,500:-115.947,-41.1218,-33.295,-75.1811,0,-70.9667	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827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chr04	26461216	.	C	G	42650.8	PASS	AB=0.460934;ABP=29.9867;AC=148;AF=0.787234;AN=188;AO=3696;CIGAR=1X;DP=4826;DPB=4826;DPRA=0;EPP=8028.77;EPPR=2452.43;GTI=2;LEN=1;MEANALT=1.02128;MQM=25.3712;MQMR=43.7447;NS=94;NUMALT=1;ODDS=0.0894495;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131692;QR=40165;RO=1128;RPL=3696;RPP=8028.77;RPPR=2452.43;RPR=0;RUN=1;SAF=3696;SAP=8028.77;SAR=0;SRF=1128;SRP=2452.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:19,16:19:672:16:572:-26.5146,0,-49.3003	1/1:77:0,77:0:0:77:2734:-175.496,-23.1793,0	1/1:82:0,82:0:0:82:2935:-188.309,-24.6845,0	1/1:65:0,65:0:0:65:2311:-144.766,-19.567,0	1/1:12:0,12:0:0:12:428:-27.3271,-3.61236,0	1/1:21:0,21:0:0:21:752:-48.8069,-6.32163,0	0/0:26:23,3:23:824:3:108:0,-0.919444,-66.316	0/1:83:53,30:53:1895:30:1080:-44.263,0,-142.284	1/1:64:0,64:0:0:64:2267:-147.083,-19.2659,0	1/1:42:0,42:0:0:42:1474:-92.8989,-12.6433,0	0/1:46:17,29:17:603:29:1014:-49.7611,0,-39.8437	1/1:49:0,49:0:0:49:1728:-112.979,-14.7505,0	1/1:54:0,54:0:0:54:1940:-123.455,-16.2556,0	1/1:50:0,50:0:0:50:1768:-110.552,-15.0515,0	1/1:44:0,44:0:0:44:1566:-97.4909,-13.2453,0	0/1:34:23,11:23:815:11:388:-14.351,0,-62.2245	1/1:65:0,65:0:0:65:2305:-150.094,-19.567,0	1/1:37:0,37:0:0:37:1324:-85.0033,-11.1381,0	0/1:29:18,11:18:644:11:392:-16.8065,0,-48.6083	0/1:56:32,24:32:1144:24:856:-36.9856,0,-84.7373	0/1:56:34,22:34:1207:22:788:-32.8358,0,-90.2836	1/1:64:0,64:0:0:64:2283:-142.776,-19.2659,0	0/1:37:19,18:19:672:18:644:-29.1956,0,-48.2286	0/1:47:32,14:32:1148:14:489:-16.83,0,-87.0207	1/1:29:0,29:0:0:29:1044:-64.9398,-8.72987,0	0/1:145:69,75:69:2447:75:2687:-122.983,0,-170.256	0/1:122:56,66:56:1985:66:2337:-110.119,0,-135.693	0/1:17:8,9:8:288:9:320:-15.1531,0,-20.6962	1/1:94:0,94:0:0:94:3367:-209.339,-28.2968,0	0/1:122:69,53:69:2460:53:1889:-81.7982,0,-180.792	0/1:42:18,24:18:644:24:852:-41.1588,0,-44.6671	0/1:8:4,4:4:144:4:144:-6.71931,0,-9.93549	0/1:11:8,3:8:284:3:108:-3.68169,0,-22.1714	1/1:5:0,5:0:0:5:176:-11.7187,-1.50515,0	1/1:1:0,1:0:0:1:36:-2.55871,-0.30103,0	1/1:2:0,2:0:0:2:72:-4.86154,-0.60206,0	1/1:146:0,146:0:0:146:5216:-324.264,-43.9504,0	1/1:82:2,80:2:72:80:2856:-172.25,-17.9658,0	1/1:54:0,54:0:0:54:1916:-122.857,-16.2556,0	1/1:1:0,1:0:0:1:32:-2.42122,-0.30103,0	0/1:51:26,25:26:936:25:881:-40.0024,0,-67.7464	0/1:32:17,15:17:608:15:536:-23.7883,0,-44.4948	0/1:54:23,31:23:824:31:1112:-53.4189,0,-56.6526	0/1:69:38,31:38:1364:31:1112:-48.261,0,-99.4685	1/1:39:0,39:0:0:39:1391:-86.4248,-11.7402,0	1/1:19:1,18:1:36:18:640:-37.0074,-2.1213,0	1/1:46:0,46:0:0:46:1652:-105.884,-13.8474,0	0/1:44:22,22:22:773:22:792:-35.8461,0,-54.0473	0/1:109:57,52:57:2040:52:1837:-82.2418,0,-146.942	1/1:68:1,67:1:36:67:2369:-145.9,-16.9339,0	1/1:79:0,79:0:0:79:2828:-175.479,-23.7814,0	1/1:9:0,9:0:0:9:324:-20.0573,-2.70927,0	1/1:87:0,87:0:0:87:3128:-200.3,-26.1896,0	0/1:12:8,4:8:270:4:140:-5.47293,0,-20.6598	1/1:21:0,21:0:0:21:733:-47.8346,-6.32163,0	0/1:68:36,32:36:1280:32:1129:-50.2791,0,-91.8062	0/1:27:17,10:17:604:10:356:-14.2795,0,-45.6714	0/1:3:2,1:2:72:1:36:-1.56382,0,-5.81554	0/1:15:5,10:5:180:10:360:-17.9334,0,-11.8079	0/1:19:6,13:6:207:13:468:-23.7215,0,-12.9548	1/1:75:0,75:0:0:75:2700:-167.156,-22.5773,0	1/1:6:0,6:0:0:6:216:-13.568,-1.80618,0	0/1:71:36,35:36:1288:35:1252:-56.4117,0,-92.896	0/1:103:51,52:51:1805:52:1864:-86.082,0,-128.981	0/1:35:18,17:18:648:17:612:-27.4543,0,-47.1028	1/1:29:0,29:0:0:29:1029:-64.2443,-8.72987,0	1/1:79:2,77:2:72:77:2756:-164.863,-17.0627,0	1/1:67:0,67:0:0:67:2404:-149.142,-20.169,0	1/1:32:0,32:0:0:32:1144:-71.3769,-9.63296,0	1/1:42:0,42:0:0:42:1488:-96.2627,-12.6433,0	1/1:50:0,50:0:0:50:1768:-110.778,-15.0515,0	0/1:15:10,5:10:356:5:176:-6.79028,0,-27.3898	0/1:58:31,27:31:1093:27:968:-44.9223,0,-76.782	1/1:52:0,52:0:0:52:1864:-119.97,-15.6536,0	1/1:69:0,69:0:0:69:2472:-155.84,-20.7711,0	1/1:65:1,64:1:36:64:2279:-139.028,-16.0308,0	1/1:33:0,33:0:0:33:1184:-77.1079,-9.93399,0	1/1:62:1,61:1:36:61:2196:-137.193,-15.1277,0	0/1:13:9,4:9:320:4:129:-5.33816,0,-24.7524	1/1:57:1,56:1:36:56:1995:-120.843,-13.6226,0	1/1:64:0,64:0:0:64:2256:-145.771,-19.2659,0	1/1:100:0,100:0:0:100:3587:-223.165,-30.103,0	1/1:55:1,54:1:36:54:1919:-116.214,-12.9584,0	1/1:58:0,58:0:0:58:2034:-128.757,-17.4597,0	0/1:81:41,40:41:1455:40:1423:-63.645,0,-104.732	0/1:107:60,47:60:2124:47:1675:-72.9934,0,-153.947	1/1:27:0,27:0:0:27:968:-62.382,-8.12781,0	1/1:45:0,45:0:0:45:1577:-103.189,-13.5464,0	1/1:57:0,57:0:0:57:2001:-129.964,-17.1587,0	1/1:48:0,48:0:0:48:1728:-107.065,-14.4494,0	0/1:95:56,39:56:1990:39:1387:-58.2092,0,-147.077	0/1:64:47,17:47:1692:17:612:-18.3799,0,-129.944	1/1:18:0,18:0:0:18:620:-39.5441,-5.41854,0	1/1:67:0,67:0:0:67:2387:-149.068,-20.169,0
chr04	26559366	.	A	T	117608	PASS	AB=0.420071;ABP=190.459;AC=149;AF=0.792553;AN=188;AO=5454;CIGAR=1X;DP=7421;DPB=7421;DPRA=0;EPP=11450;EPPR=4207.2;GTI=4;LEN=1;MEANALT=1.03191;MQM=59.9853;MQMR=59.9939;NS=94;NUMALT=1;ODDS=1.8185;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194955;QR=70281;RO=1964;RPL=45;RPP=11458.6;RPPR=4207.2;RPR=5409;RUN=1;SAF=5453;SAP=11837.5;SAR=1;SRF=1964;SRP=4267.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:16,27:16:576:27:937:-71.6957,0,-39.2307	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:137:0,136:0:0:136:4859:-437.101,-40.9401,0	1/1:104:0,104:0:0:104:3698:-333.022,-31.3071,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:75:39,36:39:1396:36:1292:-94.0065,0,-103.362	0/1:123:89,34:89:3192:34:1220:-73.0801,0,-250.476	1/1:57:1,56:1:36:56:1993:-176.045,-13.5604,0	1/1:32:0,32:0:0:32:1133:-102.277,-9.63296,0	0/1:90:49,41:49:1764:41:1476:-106.043,0,-131.951	1/1:126:0,126:0:0:126:4505:-405.617,-37.9298,0	1/1:94:0,94:0:0:94:3380:-304.414,-28.2968,0	1/1:83:0,83:0:0:83:2944:-265.192,-24.9855,0	1/1:79:0,79:0:0:79:2825:-254.487,-23.7814,0	0/1:67:35,32:35:1256:32:1148:-83.4608,0,-93.1763	1/1:40:1,39:1:36:39:1386:-121.439,-8.44293,0	1/1:35:0,35:0:0:35:1230:-111.001,-10.5361,0	0/1:61:28,33:28:1004:33:1188:-88.8658,0,-72.313	0/1:197:110,87:110:3948:87:3116:-221.364,0,-296.208	0/1:99:62,37:62:2205:37:1324:-89.6601,0,-168.912	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	0/1:134:91,43:91:3257:43:1544:-98.9151,0,-253.011	0/1:66:33,33:33:1184:33:1180:-86.6401,0,-87.0003	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:195:123,72:123:4404:72:2561:-172.038,0,-337.832	0/1:173:103,70:103:3692:70:2512:-174.254,0,-280.404	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	1/1:126:0,126:0:0:126:4518:-406.787,-37.9298,0	0/1:109:64,45:64:2277:45:1616:-112.918,0,-172.378	0/1:137:100,36:100:3577:36:1279:-74.1127,0,-280.836	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/1:29:22,7:22:792:7:252:-14.2991,0,-62.8758	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:23:0,23:0:0:23:820:-74.1163,-6.92369,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:205:0,205:0:0:205:7338:-660.468,-61.7112,0	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	1/1:76:1,75:1:32:75:2681:-238.335,-19.679,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:91:45,46:45:1604:46:1622:-118.871,0,-117.256	0/1:48:30,18:30:1072:18:640:-43.4799,0,-82.343	0/1:96:45,51:45:1620:51:1811:-134.37,0,-117.191	0/1:56:30,26:30:1057:26:925:-66.709,0,-78.5813	1/1:55:0,55:0:0:55:1954:-176.134,-16.5567,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:90:0,90:0:0:90:3223:-290.291,-27.0927,0	0/1:166:82,84:82:2944:84:3001:-220.349,0,-215.222	0/1:72:49,23:49:1764:23:810:-51.5434,0,-137.37	1/1:107:0,107:0:0:107:3805:-342.646,-32.2102,0	1/1:144:0,143:0:0:143:5106:-459.322,-43.0473,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:114:0,114:0:0:114:4076:-367.023,-34.3174,0	0/1:75:46,29:46:1644:29:1044:-71.6976,0,-125.671	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:115:62,53:62:2224:53:1883:-135.129,0,-165.806	0/1:45:32,13:32:1144:13:468:-28.9133,0,-89.7232	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:14:11,3:11:392:3:104:-5.48839,0,-31.4056	0/1:83:44,39:44:1576:39:1389:-100.321,0,-117.146	1/1:135:1,134:1:36:134:4815:-429.904,-37.0408,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:126:71,55:71:2533:55:1972:-139.825,0,-190.29	0/1:132:68,64:68:2417:64:2285:-166.175,0,-178.049	0/1:31:8,23:8:288:23:819:-64.6996,0,-16.9355	1/1:64:0,64:0:0:64:2287:-206.091,-19.2659,0	1/1:118:0,118:0:0:118:4244:-382.137,-35.5215,0	1/1:145:0,145:0:0:145:5152:-463.69,-43.6494,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:55:0,55:0:0:55:1977:-178.205,-16.5567,0	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:63:38,25:38:1368:25:892:-61.6348,0,-104.456	1/1:60:0,60:0:0:60:2149:-193.677,-18.0618,0	1/1:89:0,89:0:0:89:3161:-284.71,-26.7917,0	1/1:183:0,183:0:0:183:6564:-590.84,-55.0885,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:57:1,56:1:36:56:1984:-175.234,-13.5604,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	1/1:56:1,55:1:36:55:1961:-173.165,-13.2594,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:116:0,116:0:0:116:4161:-374.672,-34.9195,0	1/1:58:0,58:0:0:58:2063:-185.941,-17.4597,0	1/1:91:0,91:0:0:91:3249:-292.63,-27.3937,0	0/1:56:34,22:34:1212:22:792:-54.748,0,-92.5286	0/1:142:86,56:86:3073:56:2003:-137.797,0,-234.051	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:95:0,95:0:0:95:3406:-306.754,-28.5979,0	1/1:90:0,90:0:0:90:3240:-291.82,-27.0927,0	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	0/1:203:103,100:103:3669:100:3536:-257.336,0,-269.282	0/1:86:61,25:61:2188:25:892:-54.7111,0,-171.297	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:116:0,116:0:0:116:4163:-374.851,-34.9195,0
chr04	26583452	.	TCCAC	TCCAT	15206	PASS	AB=0.447086;ABP=55.1752;AC=39;AF=0.207447;AN=188;AO=963;CIGAR=4M1X;DP=5621;DPB=5621;DPRA=0.872445;EPP=2094.14;EPPR=10046.1;GTI=2;LEN=1;MEANALT=1.46341;MQM=59.9958;MQMR=60;NS=94;NUMALT=1;ODDS=0.414998;PAIRED=0;PAIREDR=0;PAO=1;PQA=34;PQR=0;PRO=0;QA=34441;QR=163549;RO=4625;RPL=0;RPP=2094.14;RPPR=10046.1;RPR=963;RUN=1;SAF=963;SAP=2094.14;SAR=0;SRF=4625;SRP=10046.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:10,7:10:358:7:252:-17.9114,0,-27.4454	0/0:89:87,0:87:3066:0:0:0,-26.1896,-275.811	0/0:78:78,0:78:2760:0:0:0,-23.4803,-248.643	0/0:155:155,0:155:5476:0:0:0,-46.6596,-492.973	0/0:40:37,3:37:1309:3:108:0,-1.96603,-108.036	0/0:39:39,0:39:1371:0:0:0,-11.7402,-123.689	0/1:101:63,37:63:2221:37:1328:-89.3691,0,-169.701	0/1:70:47,22:47:1662:22:792:-50.4748,0,-128.737	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.883	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.859	0/1:36:10,26:10:358:26:932:-73.3618,0,-21.7259	0/0:44:44,0:44:1570:0:0:0,-13.2453,-141.592	0/0:52:52,0:52:1841:0:0:0,-15.6536,-165.97	0/0:52:52,0:52:1827:0:0:0,-15.6536,-164.709	0/0:43:43,0:43:1542:0:0:0,-12.9443,-139.074	0/1:32:20,12:20:709:12:428:-29.2258,0,-54.5033	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.128	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.35	0/1:30:15,15:15:529:15:540:-39.8495,0,-38.8546	0/1:148:89,58:89:3134:58:2072:-142.14,0,-237.676	0/1:100:49,50:49:1748:50:1784:-130.681,0,-127.443	0/0:124:124,0:124:4348:0:0:0,-37.3277,-391.5	0/1:22:15,7:15:534:7:252:-16.4063,0,-41.7716	0/1:62:29,33:29:1027:33:1169:-86.8514,0,-74.0789	0/0:50:50,0:50:1757:0:0:0,-15.0515,-158.413	0/1:140:79,59:79:2807:59:2097:-147.067,0,-210.939	0/1:139:79,59:79:2792:59:2108:-148.087,0,-209.62	0/1:26:9,17:9:310:17:612:-47.5867,0,-20.4063	0/0:177:177,0:177:6249:0:0:0,-53.2823,-562.513	0/1:67:42,25:42:1487:25:900:-61.152,0,-113.956	0/1:47:28,19:28:992:19:680:-47.3808,0,-75.4461	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:12:3,9:3:107:9:324:-25.8935,0,-6.36981	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6992	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:135:134,0:134:4777:0:0:0,-40.338,-429.728	0/0:120:120,0:120:4241:0:0:0,-36.1236,-381.872	0/0:46:45,0:45:1594:0:0:0,-13.5463,-143.39	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:67:39,26:39:1400:26:928:-63.9117,0,-106.373	0/1:24:19,4:19:680:4:144:-6.0301,0,-54.246	0/1:72:37,34:37:1300:34:1213:-87.7424,0,-95.5684	0/1:25:20,5:20:710:5:180:-9.02631,0,-56.6997	0/0:32:32,0:32:1146:0:0:0,-9.63296,-103.45	0/0:40:40,0:40:1395:0:0:0,-12.0412,-125.845	0/0:33:33,0:33:1174:0:0:0,-9.93399,-105.968	0/1:93:43,49:43:1516:49:1764:-131.048,0,-108.736	0/1:79:46,31:46:1628:31:1101:-75.8736,0,-123.284	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.117	0/0:177:175,0:175:6173:0:0:0,-52.6802,-555.319	0/0:7:7,0:7:246:0:0:0,-2.10721,-22.482	0/0:87:87,0:87:3068:0:0:0,-26.1896,-276.35	0/1:29:23,6:23:825:6:216:-11.0606,0,-65.8439	0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6992	0/1:49:26,22:26:925:22:792:-56.7964,0,-68.7589	0/1:26:18,8:18:637:8:288:-18.4406,0,-49.8304	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:2,7:2:71:7:252:-20.3197,0,-4.03279	0/1:50:18,29:18:643:29:1044:-79.7816,0,-43.7069	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.135	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:108:50,57:50:1764:57:2044:-151.662,0,-126.472	0/1:110:60,50:60:2121:50:1788:-128.087,0,-158.043	0/1:28:14,14:14:485:14:504:-37.2693,0,-35.5504	0/0:48:48,0:48:1687:0:0:0,-14.4494,-152.115	0/0:80:79,1:79:2785:1:36:0,-20.4841,-247.295	0/0:90:90,0:90:3176:0:0:0,-27.0927,-286.065	0/0:8:8,0:8:285:0:0:0,-2.40824,-25.9946	0/0:42:41,0:41:1450:0:0:0,-12.3422,-130.436	0/0:64:64,0:64:2269:0:0:0,-19.2659,-204.473	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:103:63,40:63:2230:40:1424:-97.4514,0,-169.959	0/0:45:45,0:45:1590:0:0:0,-13.5463,-143.39	0/0:98:98,0:98:3469:0:0:0,-29.5009,-312.424	0/0:116:114,0:114:4056:0:0:0,-34.3174,-364.942	0/0:104:104,0:104:3639:0:0:0,-31.3071,-327.721	0/0:38:38,0:38:1317:0:0:0,-11.4391,-118.828	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:61:61,0:61:2159:0:0:0,-18.3628,-194.578	0/0:128:128,0:128:4506:0:0:0,-38.5318,-405.714	0/0:188:186,0:186:6574:0:0:0,-55.9916,-591.464	0/0:73:72,0:72:2563:0:0:0,-21.6742,-230.561	0/0:42:42,0:42:1501:0:0:0,-12.6433,-135.385	0/1:44:19,24:19:674:24:860:-64.4178,0,-47.6835	0/1:75:32,43:32:1143:43:1540:-116.316,0,-80.6024	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3099	0/0:54:54,0:54:1886:0:0:0,-16.2556,-170.015	0/0:48:48,0:48:1684:0:0:0,-14.4494,-151.845	0/0:30:30,0:30:1045:0:0:0,-9.0309,-94.3585	0/1:51:28,23:28:986:23:820:-58.77,0,-73.7011	0/1:35:12,22:12:416:22:773:-59.295,0,-27.1766	0/0:63:63,0:63:2219:0:0:0,-18.9649,-199.976	0/0:47:47,0:47:1674:0:0:0,-14.1484,-150.947
chr04	26583611	.	A	G	17166.3	PASS	AB=0.464611;ABP=28.0619;AC=34;AF=0.180851;AN=188;AO=1077;CIGAR=1X;DP=6533;DPB=6533;DPRA=1.05971;EPP=2341.69;EPPR=11848.4;GTI=1;LEN=1;MEANALT=1;MQM=59.9638;MQMR=59.9644;NS=94;NUMALT=1;ODDS=2.58568;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38257;QR=195170;RO=5455;RPL=0;RPP=2341.69;RPPR=11848.4;RPR=1077;RUN=1;SAF=0;SAP=2341.69;SAR=1077;SRF=0;SRP=11848.4;SRR=5455;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:10,7:10:360:7:239:-16.7252,0,-27.6268	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.384	0/0:146:146,0:146:5232:0:0:0,-43.9504,-471.017	0/0:153:153,0:153:5452:0:0:0,-46.0576,-490.809	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:111:54,57:54:1944:57:2007:-147.486,0,-141.822	0/1:120:60,60:60:2135:60:2112:-154.222,0,-156.294	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:92:91,0:91:3264:0:0:0,-27.3937,-293.768	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.607	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.756	0/1:43:16,27:16:563:27:960:-73.772,0,-38.0549	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.366	0/1:18:12,6:12:432:6:212:-14.0063,0,-33.8027	0/1:146:84,62:84:3016:62:2183:-152.783,0,-227.72	0/1:87:48,39:48:1716:39:1387:-98.9385,0,-128.514	0/0:121:121,0:121:4331:0:0:0,-36.4246,-389.965	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9907	0/1:80:39,41:39:1367:41:1476:-109.054,0,-99.2453	0/0:56:56,0:56:1980:0:0:0,-16.8577,-178.471	0/0:105:104,1:104:3718:1:36:0,-28.0099,-331.219	0/1:89:45,44:45:1616:44:1576:-115.329,0,-118.938	0/1:27:18,9:18:644:9:316:-20.651,0,-50.1628	0/0:163:163,0:163:5825:0:0:0,-49.0679,-524.362	0/1:122:62,60:62:2232:60:2124:-154.701,0,-164.418	0/1:70:27,43:27:972:43:1531:-117.01,0,-66.7258	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:110:110,0:110:3939:0:0:0,-33.1133,-354.683	0/0:166:164,2:164:5888:2:72:0,-43.1343,-523.191	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:123:73,50:73:2624:50:1787:-124.085,0,-199.38	0/1:31:20,11:20:720:11:392:-26.2881,0,-55.4782	0/1:82:60,22:60:2156:22:784:-46.1995,0,-169.6	0/1:49:28,21:28:985:21:752:-53.2558,0,-74.2111	0/0:52:52,0:52:1843:0:0:0,-15.6536,-166.15	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:93:93,0:93:3331:0:0:0,-27.9958,-300.007	0/1:118:57,61:57:2052:61:2167:-159.763,0,-149.43	0/1:114:59,55:59:2116:55:1963:-142.627,0,-156.391	0/0:102:101,1:101:3620:1:36:0,-27.1068,-322.407	0/0:150:150,0:150:5384:0:0:0,-45.1545,-484.69	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:118:118,0:118:4214:0:0:0,-35.5215,-379.44	0/0:22:21,1:21:756:1:27:0,-3.92288,-65.6674	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:81:42,39:42:1499:39:1400:-101.916,0,-110.819	0/1:32:25,7:25:900:7:252:-13.396,0,-71.6881	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:7,1:7:252:1:27:-0.291543,0,-20.6207	0/1:57:31,26:31:1112:26:928:-66.6795,0,-83.2326	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.343	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:50:49,1:49:1752:1:36:0,-11.4532,-154.354	0/1:125:81,44:81:2887:44:1552:-102.34,0,-222.438	0/1:61:34,27:34:1220:27:963:-68.6231,0,-91.744	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.28	0/0:125:124,1:124:4447:1:36:0,-34.0305,-396.801	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:97:97,0:97:3464:0:0:0,-29.1999,-311.97	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/1:110:49,61:49:1742:61:2169:-162.358,0,-123.949	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:73:73,0:73:2599:0:0:0,-21.9752,-234.159	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.108	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.717	0/0:213:213,0:213:7627:0:0:0,-64.1194,-686.466	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:53:31,22:31:1103:22:775:-54.1166,0,-83.6252	0/1:92:48,44:48:1724:44:1580:-114.797,0,-127.706	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:81:44,37:44:1580:37:1297:-92.6393,0,-118.086	0/1:54:19,35:19:684:35:1239:-95.558,0,-45.6347	0/0:83:83,0:83:2928:0:0:0,-24.9855,-263.755	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.109
chr04	26680235	.	G	A	37186.5	PASS	AB=0.491546;ABP=6.57164;AC=35;AF=0.18617;AN=188;AO=2840;CIGAR=1X;DP=13027;DPB=13027;DPRA=1.47534;EPP=698.888;EPPR=2080.15;GTI=1;LEN=1;MEANALT=1.02381;MQM=24.4725;MQMR=44.2281;NS=94;NUMALT=1;ODDS=2.18893;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101283;QR=358299;RO=10183;RPL=307;RPP=3791.68;RPPR=10653;RPR=2533;RUN=1;SAF=1250;SAP=91.3984;SAR=1590;SRF=5089;SRP=3.01563;SRR=5094;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:108:108,0:108:3784:0:0:0,-32.5112,-331.277	0/1:167:81,86:81:2871:86:3044:-135.874,0,-200.175	0/0:245:245,0:245:8587:0:0:0,-73.7523,-750.688	0/0:268:267,1:267:9414:1:36:0,-78.9814,-828.345	0/0:136:132,4:132:4652:4:144:0,-32.5859,-398.002	0/0:66:66,0:66:2313:0:0:0,-19.868,-200.221	0/1:164:84,80:84:2965:80:2868:-126.481,0,-212.529	0/0:258:258,0:258:9031:0:0:0,-77.6657,-786.727	0/0:197:197,0:197:6907:0:0:0,-59.3029,-604.883	0/0:164:164,0:164:5786:0:0:0,-49.3689,-510.67	0/0:104:102,0:102:3605:0:0:0,-30.7051,-318.171	0/0:111:111,0:111:3866:0:0:0,-33.4143,-340.829	0/1:115:58,57:58:2053:57:2052:-74.379,0,-145.685	0/0:119:119,0:119:4228:0:0:0,-35.8226,-370.682	0/1:96:45,51:45:1593:51:1832:-77.3869,0,-112.815	0/0:112:112,0:112:3945:0:0:0,-33.7154,-347.285	0/0:111:111,0:111:3869:0:0:0,-33.4143,-334.423	0/1:70:42,28:42:1452:28:1000:-37.014,0,-104.802	0/1:77:34,43:34:1211:43:1544:-59.1484,0,-83.8279	0/1:280:125,155:125:4365:155:5533:-244.811,0,-298.046	0/1:192:100,92:100:3518:92:3262:-144.602,0,-249.295	0/1:113:42,71:42:1483:71:2527:-139.907,0,-98.2176	0/0:122:122,0:122:4289:0:0:0,-36.7257,-380.325	0/0:148:141,7:141:4965:7:252:0,-27.5274,-414.387	0/0:147:147,0:147:5158:0:0:0,-44.2514,-452.969	0/1:356:162,194:162:5681:194:6887:-355.948,0,-394.106	0/0:311:311,0:311:10959:0:0:0,-93.6203,-962.05	0/0:37:37,0:37:1302:0:0:0,-11.1381,-115.012	0/1:268:151,116:151:5278:116:4133:-182.75,0,-386.859	0/0:164:162,2:162:5724:2:72:0,-46.149,-500.661	0/0:148:147,0:147:5229:0:0:0,-44.2514,-459.89	0/0:14:14,0:14:491:0:0:0,-4.21442,-43.5444	0/0:42:42,0:42:1508:0:0:0,-12.6433,-133.253	0/1:12:8,4:8:284:4:144:-4.60511,0,-21.5286	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.0703	0/0:28:28,0:28:984:0:0:0,-8.42884,-87.5559	0/1:266:137,129:137:4848:129:4552:-182.165,0,-350.468	0/0:145:145,0:145:5049:0:0:0,-43.6493,-439.355	0/1:69:41,28:41:1418:28:1008:-31.9067,0,-104.591	0/1:5:3,2:3:104:2:72:-2.87849,0,-8.00577	0/1:206:108,98:108:3748:98:3491:-148.421,0,-267.246	0/0:68:68,0:68:2353:0:0:0,-20.47,-206.24	0/0:206:206,0:206:7332:0:0:0,-62.0122,-643.276	0/0:124:124,0:124:4326:0:0:0,-37.3277,-381.986	0/0:93:93,0:93:3266:0:0:0,-27.9958,-287.276	0/0:102:102,0:102:3616:0:0:0,-30.7051,-317.469	0/0:200:200,0:200:6980:0:0:0,-60.206,-608.015	0/1:229:123,106:123:4281:106:3772:-167.229,0,-307.941	0/1:144:74,70:74:2575:70:2499:-115.439,0,-185.256	0/1:261:122,139:122:4304:139:4979:-235.024,0,-302.339	0/1:204:111,93:111:3940:93:3324:-145.198,0,-288.075	0/0:19:19,0:19:680:0:0:0,-5.71957,-60.7001	0/0:234:234,0:234:8306:0:0:0,-70.441,-727.27	0/0:51:51,0:51:1797:0:0:0,-15.3525,-159.697	0/0:14:14,0:14:495:0:0:0,-4.21442,-42.589	0/0:213:213,0:213:7435:0:0:0,-64.1194,-650.303	0/0:34:34,0:34:1179:0:0:0,-10.235,-104.215	0/0:18:18,0:18:635:0:0:0,-5.41854,-56.0886	0/1:31:16,15:16:572:15:536:-24.0732,0,-40.8508	0/0:128:128,0:128:4557:0:0:0,-38.5318,-399.362	0/0:160:160,0:160:5659:0:0:0,-48.1648,-498.612	0/0:16:16,0:16:572:0:0:0,-4.81648,-50.2765	0/0:175:175,0:175:6098:0:0:0,-52.6802,-539.149	0/1:340:184,156:184:6446:156:5551:-243.739,0,-465.52	0/0:114:114,0:114:4019:0:0:0,-34.3174,-352.193	0/0:98:98,0:98:3454:0:0:0,-29.5009,-301.911	0/0:181:178,3:178:6256:3:108:0,-49.7413,-547.397	0/0:156:156,0:156:5533:0:0:0,-46.9607,-486.516	0/0:83:83,0:83:2944:0:0:0,-24.9855,-259.842	0/0:118:118,0:118:4113:0:0:0,-35.5215,-356.416	0/0:108:108,0:108:3803:0:0:0,-32.5112,-337.33	0/0:38:38,0:38:1308:0:0:0,-11.4391,-115.856	0/1:141:83,58:83:2862:58:2088:-68.8539,0,-208.973	0/1:146:74,72:74:2622:72:2563:-99.8624,0,-185.11	0/1:233:111,122:111:3921:122:4333:-179.919,0,-275.103	0/0:239:237,2:237:8390:2:72:0,-66.2827,-730.486	0/1:188:92,96:92:3227:96:3428:-138.662,0,-223.264	0/0:210:209,1:209:7362:1:36:0,-61.423,-641.208	0/0:26:26,0:26:913:0:0:0,-7.82678,-80.9645	0/1:200:114,86:114:3989:86:3080:-110.568,0,-290.182	0/1:159:91,68:91:3203:68:2444:-95.687,0,-229.91	0/1:324:145,179:145:5128:179:6386:-275.006,0,-353.603	0/1:99:52,47:52:1838:47:1671:-82.4266,0,-131.308	0/1:106:53,53:53:1872:53:1900:-76.8587,0,-134.269	0/0:98:98,0:98:3437:0:0:0,-29.5009,-302.427	0/1:187:103,84:103:3653:84:3000:-112.458,0,-266.108	0/1:49:30,19:30:1026:19:676:-24.6819,0,-73.6798	0/0:118:118,0:118:4139:0:0:0,-35.5215,-363.973	0/0:103:103,0:103:3656:0:0:0,-31.0061,-321.146	0/0:91:91,0:91:3196:0:0:0,-27.3937,-280.46	0/1:150:88,62:88:3137:62:2216:-62.1106,0,-232.705	0/1:90:29,61:29:1018:61:2168:-99.3378,0,-61.8244	0/0:169:169,0:169:6002:0:0:0,-50.8741,-528.213	0/0:167:167,0:167:5889:0:0:0,-50.272,-519.791
chr04	26680240	.	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chr04	26705042	.	T	C	140264	PASS	AB=0.518462;ABP=14.6363;AC=145;AF=0.771277;AN=188;AO=7353;CIGAR=1X;DP=9266;DPB=9266;DPRA=20.1217;EPP=15969.8;EPPR=4126.68;GTI=3;LEN=1;MEANALT=1.02174;MQM=37.2546;MQMR=59.5939;NS=94;NUMALT=1;ODDS=0.0126145;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262721;QR=68296;RO=1911;RPL=0;RPP=15969.8;RPPR=4126.68;RPR=7353;RUN=1;SAF=7353;SAP=15969.8;SAR=0;SRF=1911;SRP=4152.69;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:10,3:10:360:3:108:-5.01196,0,-28.8144	1/1:146:0,146:0:0:146:5207:-416.861,-43.9504,0	1/1:87:0,87:0:0:87:3120:-249.369,-26.1896,0	1/1:184:0,184:0:0:184:6588:-556.448,-55.3895,0	0/1:20:9,11:9:324:11:396:-27.4409,0,-23.4853	0/1:48:24,24:24:845:24:860:-54.5412,0,-61.9177	0/1:133:58,75:58:2088:75:2677:-188.205,0,-148.146	0/1:250:178,72:178:6352:72:2575:-131.795,0,-496.357	1/1:54:0,54:0:0:54:1928:-155.2,-16.2556,0	1/1:161:0,160:0:0:160:5730:-483.557,-48.1648,0	0/1:115:46,69:46:1643:69:2472:-176.067,0,-113.532	1/1:76:0,76:0:0:76:2723:-217.661,-22.8783,0	1/1:94:1,93:1:36:93:3340:-262.777,-24.7181,0	1/1:153:0,153:0:0:153:5479:-457.24,-46.0576,0	1/1:84:0,84:0:0:84:3008:-255.062,-25.2865,0	0/1:72:34,38:34:1220:38:1360:-88.0151,0,-88.2108	1/1:93:0,93:0:0:93:3332:-266.402,-27.9958,0	1/1:83:0,83:0:0:83:2971:-237.916,-24.9855,0	0/1:51:17,34:17:608:34:1212:-81.9659,0,-39.6995	0/1:156:70,86:70:2503:86:3080:-216.263,0,-178.561	0/1:69:32,37:32:1123:37:1312:-88.671,0,-80.6055	1/1:39:0,39:0:0:39:1400:-122.038,-11.7402,0	0/1:23:13,10:13:468:10:351:-22.5068,0,-35.536	0/1:51:24,27:24:856:27:959:-64.3246,0,-62.0086	1/1:37:0,37:0:0:37:1328:-111.379,-11.1381,0	0/1:340:151,189:151:5420:189:6738:-481.805,0,-385.51	0/1:193:86,107:86:3088:107:3829:-258.878,0,-219.767	0/1:40:18,22:18:633:22:788:-54.307,0,-45.2492	1/1:180:0,180:0:0:180:6438:-560.274,-54.1854,0	0/1:173:97,76:97:3463:76:2703:-173.288,0,-259.768	0/1:109:35,74:35:1256:74:2620:-191.66,0,-80.526	0/1:9:4,5:4:144:5:176:-12.4388,0,-10.6043	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.3656	1/1:5:0,5:0:0:5:180:-14.6631,-1.50515,0	1/1:14:0,14:0:0:14:495:-39.9689,-4.21442,0	1/1:9:0,9:0:0:9:312:-25.592,-2.70927,0	1/1:281:0,281:0:0:281:10057:-871.134,-84.5894,0	1/1:159:0,159:0:0:159:5667:-472.873,-47.8638,0	1/1:75:0,75:0:0:75:2679:-214.432,-22.5773,0	1/1:1:0,1:0:0:1:36:-3.18762,-0.30103,0	0/1:131:65,66:65:2328:66:2360:-157.591,0,-170.141	0/1:36:15,21:15:540:21:756:-51.636,0,-38.0948	0/1:94:42,52:42:1504:52:1872:-126.283,0,-107.135	0/1:84:33,51:33:1179:51:1832:-130.131,0,-81.1225	1/1:57:1,56:1:36:56:2003:-168.266,-13.5655,0	1/1:51:0,51:0:0:51:1815:-157.701,-15.3525,0	1/1:109:0,109:0:0:109:3903:-311.725,-32.8123,0	0/1:176:88,88:88:3156:88:3156:-216.765,0,-231.088	0/1:100:53,47:53:1891:47:1688:-114.715,0,-140.355	1/1:191:0,191:0:0:191:6824:-582.219,-57.4967,0	1/1:132:0,132:0:0:132:4696:-406.748,-39.736,0	1/1:9:0,9:0:0:9:324:-28.003,-2.70927,0	1/1:127:0,127:0:0:127:4552:-363.644,-38.2308,0	0/1:27:11,16:11:396:16:576:-41.6158,0,-27.854	1/1:24:0,24:0:0:24:860:-68.9906,-7.22472,0	0/1:114:59,55:59:2116:55:1972:-128.533,0,-156.311	0/1:34:21,13:21:752:13:468:-29.2951,0,-57.7665	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:31:16,15:16:576:15:536:-36.3689,0,-42.8421	0/1:67:25,42:25:900:42:1508:-106.267,0,-61.1438	1/1:184:1,183:1:36:183:6542:-552.662,-51.7912,0	1/1:8:0,8:0:0:8:288:-24.4402,-2.40824,0	0/1:197:84,113:84:3015:113:4027:-289.963,0,-212.269	0/1:188:89,99:89:3196:99:3544:-244.254,0,-231.244	0/1:109:48,61:48:1720:61:2180:-148.292,0,-122.273	1/1:54:0,54:0:0:54:1923:-164.314,-16.2556,0	1/1:121:2,119:2:72:119:4248:-353.529,-29.5879,0	1/1:85:1,84:1:36:84:2996:-251.976,-21.9893,0	1/1:50:0,50:0:0:50:1770:-147.359,-15.0515,0	1/1:73:0,73:0:0:73:2615:-208.405,-21.9752,0	1/1:146:0,146:0:0:146:5228:-452.145,-43.9504,0	0/1:25:12,13:12:423:13:460:-32.2869,0,-30.8697	0/1:132:71,61:71:2539:61:2170:-134.201,0,-188.641	1/1:90:0,90:0:0:90:3224:-257.796,-27.0927,0	1/1:263:0,263:0:0:263:9337:-775.551,-79.1709,0	1/1:162:0,162:0:0:162:5774:-492.594,-48.7669,0	1/1:79:0,79:0:0:79:2836:-226.342,-23.7814,0	1/1:171:0,171:0:0:171:6134:-489.694,-51.4761,0	0/1:9:3,6:3:108:6:216:-14.8227,0,-7.3659	1/1:114:4,110:4:135:110:3934:-312.804,-21.8433,0	1/1:107:0,107:0:0:107:3835:-306.416,-32.2102,0	1/1:181:0,181:0:0:181:6417:-543.02,-54.4864,0	1/1:164:0,164:0:0:164:5888:-496.327,-49.3689,0	1/1:89:0,89:0:0:89:3179:-269.601,-26.7917,0	0/1:90:41,49:41:1455:49:1752:-123.199,0,-104.148	0/1:202:99,103:99:3502:103:3652:-251.583,0,-254.344	1/1:40:0,40:0:0:40:1415:-113.84,-12.0412,0	1/1:70:0,70:0:0:70:2478:-199.036,-21.0721,0	1/1:83:0,83:0:0:83:2975:-238.096,-24.9855,0	1/1:92:0,91:0:0:91:3247:-269.163,-27.3937,0	0/1:152:71,81:71:2504:81:2899:-195.445,0,-179.838	0/1:64:39,25:39:1391:25:892:-57.4904,0,-106.221	1/1:49:0,49:0:0:49:1740:-149.17,-14.7505,0	1/1:139:0,139:0:0:139:4971:-421.126,-41.8432,0
chr04	26705087	.	G	A	33792.4	PASS	AB=0.517312;ABP=13.1604;AC=42;AF=0.223404;AN=188;AO=2028;CIGAR=1X;DP=9258;DPB=9258;DPRA=1.05488;EPP=4406.76;EPPR=15681;GTI=1;LEN=1;MEANALT=1.04167;MQM=59.9122;MQMR=59.9868;NS=94;NUMALT=1;ODDS=3.71521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71758;QR=250278;RO=7224;RPL=0;RPP=4406.76;RPPR=15689.7;RPR=2028;RUN=1;SAF=0;SAP=4406.76;SAR=2028;SRF=1;SRP=15681;SRR=7223;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:26,38:26:894:38:1364:-103.784,0,-61.5057	0/0:92:92,0:92:3207:0:0:0,-27.6948,-288.854	0/0:199:199,0:199:6858:0:0:0,-59.905,-617.301	0/0:431:431,0:431:15005:0:0:0,-129.744,-1350.21	0/1:30:14,16:14:472:16:563:-41.9683,0,-33.7691	0/1:42:23,19:23:776:19:660:-47.0773,0,-57.5075	0/1:134:69,65:69:2329:65:2246:-162.06,0,-169.523	0/1:106:55,51:55:1915:51:1805:-130.814,0,-140.715	0/0:97:96,0:96:3298:0:0:0,-28.8989,-296.679	0/0:80:80,0:80:2804:0:0:0,-24.0824,-252.587	0/1:43:25,18:25:862:18:634:-44.4429,0,-64.9489	0/0:95:95,0:95:3237:0:0:0,-28.5978,-291.555	0/0:94:94,0:94:3255:0:0:0,-28.2968,-293.174	0/0:48:48,0:48:1676:0:0:0,-14.4494,-151.127	0/0:85:85,0:85:2975:0:0:0,-25.5875,-267.981	0/1:75:36,39:36:1216:39:1387:-102.551,0,-87.1577	0/0:51:51,0:51:1735:0:0:0,-15.3525,-156.428	0/0:39:39,0:39:1354:0:0:0,-11.7402,-122.154	0/1:24:9,15:9:307:15:507:-38.7255,0,-20.7355	0/1:175:107,68:107:3701:68:2406:-164.114,0,-280.614	0/1:142:72,70:72:2495:70:2474:-180.167,0,-182.052	0/0:102:102,0:102:3586:0:0:0,-30.7051,-322.946	0/1:165:80,85:80:2788:85:3008:-221.276,0,-201.487	0/1:56:33,23:33:1169:23:828:-57.9855,0,-88.6576	0/0:47:47,0:47:1613:0:0:0,-14.1484,-145.453	0/1:321:154,167:154:5327:167:5939:-437.989,0,-382.942	0/1:260:131,129:131:4546:129:4583:-334.368,0,-331.043	0/1:23:8,15:8:276:15:538:-41.8321,0,-18.2516	0/0:305:305,0:305:10549:0:0:0,-91.8141,-949.353	0/1:141:60,81:60:2097:81:2889:-217.801,0,-146.551	0/1:149:71,78:71:2447:78:2755:-203.337,0,-175.63	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:20:9,11:9:315:11:387:-29.1453,0,-22.6666	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:14:14,0:14:469:0:0:0,-4.21442,-42.5293	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0432	0/0:217:216,0:216:7343:0:0:0,-65.0225,-660.595	0/0:103:102,1:102:3580:1:25:0,-28.5196,-319.924	0/0:46:46,0:46:1574:0:0:0,-13.8474,-141.945	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:180:88,92:88:3047:92:3253:-238.767,0,-220.273	0/1:28:17,11:17:595:11:383:-26.3744,0,-45.4478	0/1:62:22,40:22:775:40:1419:-109.343,0,-51.4073	0/1:82:36,46:36:1225:46:1631:-122.394,0,-85.8614	0/0:65:65,0:65:2252:0:0:0,-19.5669,-202.943	0/0:102:102,0:102:3526:0:0:0,-30.7051,-317.549	0/0:134:134,0:134:4659:0:0:0,-40.338,-419.473	0/1:166:45,121:45:1570:121:4276:-335.047,0,-91.6181	0/1:101:35,66:35:1214:66:2331:-179.642,0,-79.1551	0/0:121:121,0:121:4206:0:0:0,-36.4246,-378.725	0/0:111:111,0:111:3939:0:0:0,-33.4143,-354.705	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:126:126,0:126:4371:0:0:0,-37.9298,-393.568	0/1:76:45,31:45:1540:31:1100:-76.4301,0,-116.004	0/0:10:10,0:10:334:0:0:0,-3.0103,-30.3829	0/1:170:93,77:93:3220:77:2721:-193.95,0,-238.848	0/1:39:15,24:15:527:24:860:-65.9701,0,-36.02	0/1:12:8,4:8:273:4:140:-9.33222,0,-21.2878	0/1:19:7,12:7:252:12:423:-32.6808,0,-17.3094	0/1:104:49,55:49:1724:55:1948:-144.285,0,-124.135	0/0:90:90,0:90:3075:0:0:0,-27.0927,-276.984	0/0:4:4,0:4:125:0:0:0,-1.20412,-11.5586	0/1:199:123,76:123:4350:76:2693:-182.708,0,-331.772	0/1:142:68,74:68:2379:74:2620:-193.3,0,-171.62	0/1:75:37,38:37:1324:38:1356:-99.7632,0,-96.8848	0/0:107:107,0:107:3710:0:0:0,-32.2102,-334.104	0/0:204:201,3:201:6940:3:90:0,-53.0127,-616.197	0/0:176:174,2:174:6055:2:72:0,-46.1446,-538.219	0/0:37:37,0:37:1265:0:0:0,-11.1381,-114.145	0/0:60:60,0:60:2121:0:0:0,-18.0618,-191.157	0/0:53:53,0:53:1814:0:0:0,-15.9546,-163.538	0/1:15:4,11:4:144:11:392:-31.1046,0,-8.79817	0/1:102:51,50:51:1767:50:1767:-128.533,0,-128.546	0/0:105:105,0:105:3603:0:0:0,-31.6081,-324.477	0/0:124:123,0:123:4297:0:0:0,-37.0267,-386.591	0/0:148:148,0:148:5130:0:0:0,-44.5524,-461.848	0/0:66:66,0:66:2245:0:0:0,-19.868,-202.308	0/0:144:143,1:143:4990:1:36:0,-39.75,-445.653	0/1:16:7,9:7:252:9:320:-24.3216,0,-18.2125	0/0:102:101,1:101:3549:1:36:0,-27.1068,-316.021	0/0:118:118,0:118:4179:0:0:0,-35.5215,-376.293	0/0:232:231,0:231:8083:0:0:0,-69.5379,-727.181	0/0:70:70,0:70:2393:0:0:0,-21.0721,-215.627	0/0:94:94,0:94:3222:0:0:0,-28.2968,-290.205	0/1:57:31,25:31:1036:25:881:-62.3886,0,-76.3224	0/1:121:54,67:54:1826:67:2364:-176.592,0,-128.193	0/0:28:28,0:28:967:0:0:0,-8.42884,-87.3378	0/0:98:98,0:98:3333:0:0:0,-29.5009,-300.19	0/0:102:101,1:101:3432:1:36:0,-27.1068,-305.498	0/0:42:42,0:42:1421:0:0:0,-12.6433,-128.179	0/1:94:42,52:42:1433:52:1830:-136.68,0,-100.962	0/1:69:21,48:21:723:48:1710:-133.414,0,-44.6174	0/0:188:188,0:188:6571:0:0:0,-56.5936,-591.482	0/0:120:119,1:119:4089:1:36:0,-32.5253,-364.333
chr04	26705093	.	G	A	34878	PASS	AB=0.532498;ABP=38.1535;AC=42;AF=0.223404;AN=188;AO=2051;CIGAR=1X;DP=8916;DPB=8916;DPRA=1.0905;EPP=4456.7;EPPR=14901.5;GTI=1;LEN=1;MEANALT=1.06122;MQM=59.9215;MQMR=59.9898;NS=94;NUMALT=1;ODDS=1.65331;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73005;QR=238289;RO=6861;RPL=0;RPP=4456.7;RPPR=14892.8;RPR=2051;RUN=1;SAF=0;SAP=4456.7;SAR=2051;SRF=1;SRP=14892.8;SRR=6860;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:24,36:24:817:36:1296:-98.8821,0,-55.7802	0/0:88:88,0:88:3070:0:0:0,-26.4906,-276.528	0/0:192:192,0:192:6701:0:0:0,-57.7978,-603.177	0/0:408:408,0:408:14336:0:0:0,-122.82,-1290.02	0/1:30:14,16:14:487:16:576:-43.1441,0,-35.1283	0/1:43:23,20:23:809:20:720:-52.1845,0,-60.184	0/1:133:66,67:66:2328:67:2336:-170.461,0,-169.742	0/1:102:52,50:52:1776:50:1796:-131.211,0,-129.412	0/0:95:95,0:95:3294:0:0:0,-28.5978,-296.682	0/0:74:74,0:74:2564:0:0:0,-22.2762,-231.002	0/1:44:25,19:25:868:19:675:-47.8316,0,-65.1876	0/0:92:92,0:92:3138:0:0:0,-27.6948,-282.649	0/0:89:89,0:89:3091:0:0:0,-26.7917,-278.419	0/0:49:49,0:49:1699:0:0:0,-14.7505,-153.192	0/0:85:85,0:85:2957:0:0:0,-25.5875,-266.365	0/1:73:31,42:31:1053:42:1494:-112.778,0,-73.096	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/0:40:40,0:40:1397:0:0:0,-12.0412,-126.025	0/1:24:10,14:10:343:14:496:-37.7495,0,-23.9758	0/1:167:95,72:95:3352:72:2551:-179.567,0,-251.626	0/1:134:65,69:65:2281:69:2447:-180.146,0,-165.177	0/0:92:92,0:92:3220:0:0:0,-27.6948,-290.026	0/1:162:74,88:74:2554:88:3134:-233.518,0,-181.344	0/1:60:37,23:37:1306:23:804:-54.6138,0,-99.7782	0/0:42:42,0:42:1461:0:0:0,-12.6433,-131.782	0/1:315:146,169:146:5104:169:6029:-447.888,0,-364.685	0/1:255:121,133:121:4152:133:4706:-346.878,0,-297.05	0/1:23:9,14:9:294:14:500:-38.4125,0,-19.8544	0/0:290:290,0:290:10107:0:0:0,-87.2987,-909.594	0/1:143:60,83:60:2103:83:2947:-222.415,0,-146.49	0/1:148:69,79:69:2405:79:2794:-207.146,0,-172.152	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:21:9,12:9:316:12:419:-31.721,0,-22.4572	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:12:12,0:12:409:0:0:0,-3.61236,-37.1354	0/0:21:21,0:21:735:0:0:0,-6.32163,-66.4705	0/0:201:201,0:201:6843:0:0:0,-60.507,-615.972	0/0:91:90,1:90:3136:1:36:0,-23.9392,-279.015	0/0:41:40,0:40:1366:0:0:0,-12.0412,-122.873	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:172:76,96:76:2579:96:3433:-257.34,0,-180.582	0/1:27:16,11:16:553:11:392:-27.4922,0,-41.9662	0/1:62:20,42:20:679:42:1484:-115.188,0,-42.7605	0/1:81:37,44:37:1294:44:1571:-117.297,0,-92.3761	0/0:57:57,0:57:1901:0:0:0,-17.1587,-171.362	0/0:90:90,0:90:3097:0:0:0,-27.0927,-278.962	0/0:118:118,0:118:4067:0:0:0,-35.5215,-366.222	0/1:169:46,123:46:1595:123:4375:-343.048,0,-92.9619	0/1:100:36,64:36:1276:64:2268:-174.277,0,-85.0401	0/0:117:117,0:117:4097:0:0:0,-35.2205,-368.918	0/0:105:105,0:105:3644:0:0:0,-31.6081,-328.167	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:116:116,0:116:4070:0:0:0,-34.9195,-366.491	0/1:74:44,30:44:1524:30:1076:-74.8766,0,-115.17	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:159:81,77:81:2793:77:2757:-200.588,0,-203.838	0/1:41:16,25:16:560:25:889:-67.9741,0,-38.3865	0/1:11:8,3:8:271:3:108:-6.76384,0,-21.4081	0/1:18:6,11:6:212:11:396:-30.5883,0,-14.0259	0/1:106:48,58:48:1677:58:2065:-154.209,0,-119.305	0/0:92:92,0:92:3178:0:0:0,-27.6948,-286.247	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:190:115,75:115:3990:75:2678:-184.067,0,-302.101	0/1:139:66,73:66:2312:73:2612:-193.485,0,-166.496	0/1:76:36,40:36:1260:40:1436:-106.659,0,-90.8213	0/0:98:97,1:97:3421:1:36:0,-25.9027,-304.508	0/0:189:187,2:187:6448:2:72:0,-50.0579,-573.587	0/0:163:161,2:161:5636:2:68:0,-42.6102,-500.905	0/0:38:38,0:38:1332:0:0:0,-11.4391,-120.18	0/0:61:61,0:61:2160:0:0:0,-18.3628,-194.668	0/0:51:51,0:51:1795:0:0:0,-15.3525,-161.831	0/1:14:3,11:3:93:11:396:-31.7683,0,-4.46231	0/1:100:47,53:47:1655:53:1874:-138.821,0,-119.134	0/0:103:103,0:103:3574:0:0:0,-31.0061,-321.871	0/0:116:115,1:115:3979:1:36:0,-31.3212,-354.707	0/0:146:146,0:146:5117:0:0:0,-43.9504,-460.678	0/0:64:64,0:64:2164:0:0:0,-19.2659,-195.02	0/0:138:137,1:137:4785:1:36:0,-37.9439,-427.215	0/1:16:7,9:7:226:9:324:-24.6786,0,-15.84	0/0:95:94,1:94:3259:1:36:0,-24.9996,-289.935	0/0:110:110,0:110:3788:0:0:0,-33.1133,-341.122	0/0:218:218,0:218:7617:0:0:0,-65.6245,-685.584	0/0:67:67,0:67:2348:0:0:0,-20.169,-211.578	0/0:94:94,0:94:3296:0:0:0,-28.2968,-296.862	0/1:59:32,27:32:1104:27:968:-69.6766,0,-81.9026	0/1:121:55,66:55:1917:66:2350:-175.333,0,-136.381	0/0:28:28,0:28:955:0:0:0,-8.42884,-86.2563	0/0:100:100,0:100:3401:0:0:0,-30.103,-306.31	0/0:97:97,0:97:3363:0:0:0,-29.1999,-302.887	0/0:43:43,0:43:1465:0:0:0,-12.9443,-132.138	0/1:89:40,49:40:1370:49:1750:-130.991,0,-96.798	0/1:70:23,47:23:763:47:1691:-131.405,0,-47.9027	0/0:178:178,0:178:6150:0:0:0,-53.5833,-553.611	0/0:118:117,1:117:4039:1:36:0,-31.9233,-359.616
chr04	26707813	.	T	C	16441.2	PASS	AB=0.534502;ABP=21.291;AC=34;AF=0.180851;AN=188;AO=991;CIGAR=1X;DP=6317;DPB=6317;DPRA=1.29572;EPP=2035.05;EPPR=10152.9;GTI=1;LEN=1;MEANALT=1;MQM=59.1695;MQMR=59.9799;NS=94;NUMALT=1;ODDS=1.81908;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35207;QR=190165;RO=5325;RPL=14;RPP=2035.05;RPPR=10152.9;RPR=977;RUN=1;SAF=991;SAP=2154.94;SAR=0;SRF=5325;SRP=11566.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:8,18:8:288:18:628:-48.9898,0,-18.4406	0/0:78:77,1:77:2742:1:36:0,-19.8821,-243.424	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.105	0/1:33:17,16:17:612:16:550:-39.8827,0,-45.4794	0/1:17:5,12:5:167:12:428:-33.7413,0,-10.2409	0/1:69:23,46:23:828:46:1642:-127.25,0,-54.073	0/1:50:25,25:25:885:25:892:-65.5129,0,-64.915	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:46:44,2:44:1546:2:72:0,-7.01066,-132.591	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8171	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:16:6,10:6:216:10:331:-25.2921,0,-14.974	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:33:25,8:25:887:8:284:-15.9516,0,-70.2119	0/1:84:32,52:32:1152:52:1849:-141.36,0,-78.7036	0/1:85:39,46:39:1396:46:1652:-123.267,0,-100.352	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:74:32,42:32:1144:42:1508:-113.682,0,-80.9933	0/1:80:39,41:39:1396:41:1449:-106.598,0,-101.857	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:120:48,72:48:1716:72:2574:-195.671,0,-118.496	0/1:103:46,57:46:1643:57:2036:-152.506,0,-117.147	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/1:68:37,31:37:1328:31:1108:-79.5279,0,-99.3522	0/1:79:20,59:20:703:59:2090:-164.5,0,-39.7945	0/0:149:147,2:147:5252:2:72:0,-38.0403,-466.005	0/0:153:145,8:145:5192:8:284:0,-20.1542,-441.516	0/0:286:286,0:286:10244:0:0:0,-86.0946,-921.883	0/0:416:413,3:413:14718:3:104:0,-115.526,-1314.65	0/0:339:338,0:338:12120:0:0:0,-101.748,-1090.08	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:66:64,2:64:2292:2:72:0,-13.0313,-199.705	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.927	0/0:151:151,0:151:5409:0:0:0,-45.4555,-486.938	0/1:52:18,34:18:640:34:1207:-93.2278,0,-42.2758	0/1:31:26,5:26:936:5:180:-7.22014,0,-75.2275	0/1:70:28,42:28:991:42:1499:-114.058,0,-68.4314	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:57:24,33:24:856:33:1179:-89.2017,0,-60.2024	0/1:48:24,24:24:855:24:855:-62.7894,0,-62.8207	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:103:101,2:101:3599:2:72:0,-24.1694,-317.281	0/0:185:185,0:185:6572:0:0:0,-55.6905,-591.563	0/0:56:55,1:55:1953:1:36:0,-13.2594,-172.446	0/1:16:8,8:8:284:8:276:-20.3535,0,-21.0869	0/0:250:249,1:249:8851:1:36:0,-71.6592,-792.976	0/1:33:17,16:17:604:16:560:-40.7919,0,-44.7566	0/1:34:21,13:21:752:13:445:-30.134,0,-57.7712	0/0:70:68,2:68:2423:2:72:0,-14.2354,-211.489	0/0:146:142,4:142:5065:4:144:0,-30.6368,-442.681	0/1:38:13,25:13:468:25:890:-68.9517,0,-31.0205	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:145:145,0:145:5166:0:0:0,-43.6493,-465.082	0/1:36:4,32:4:144:32:1129:-91.0075,0,-2.47654	0/1:87:32,55:32:1133:55:1957:-150.179,0,-76.087	0/1:32:21,11:21:752:11:396:-26.3095,0,-58.3733	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:76:73,3:73:2608:3:99:0,-13.6417,-225.732	0/0:54:52,2:52:1860:2:72:0,-9.4189,-160.843	0/0:59:59,0:59:2111:0:0:0,-17.7608,-190.258	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:105:103,2:103:3664:2:72:0,-24.7714,-323.129	0/1:45:19,26:19:680:26:936:-71.0085,0,-47.9828	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:65:65,0:65:2299:0:0:0,-19.5669,-207.171	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.639	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:213:203,10:203:7260:10:341:0,-33.1041,-622.435	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:48:23,25:23:811:25:882:-65.0359,0,-58.8605	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842	0/1:142:119,23:119:4208:23:816:-30.993,0,-336.155	0/1:20:3,17:3:108:17:603:-48.5219,0,-4.05457	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:13:12,1:12:432:1:36:0,-0.315115,-35.6229
chr04	26708057	.	A	T	21555.9	PASS	AB=0.498841;ABP=3.04051;AC=39;AF=0.214286;AN=182;AO=1297;CIGAR=1X;DP=5983;DPB=5983;DPRA=1.01137;EPP=2802.07;EPPR=10018.4;GTI=0;LEN=1;MEANALT=1.06977;MQM=59.9414;MQMR=59.9402;NS=91;NUMALT=1;ODDS=3.47242;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46182;QR=163666;RO=4680;RPL=1295;RPP=2802.07;RPPR=10018.4;RPR=2;RUN=1;SAF=1297;SAP=2819.41;SAR=0;SRF=4680;SRP=10165.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:10,5:10:348:5:176:-11.6686,0,-27.0685	0/0:50:50,0:50:1760:0:0:0,-15.0515,-158.684	0/0:87:87,0:87:3067:0:0:0,-26.1896,-276.254	0/0:178:178,0:178:6275:0:0:0,-53.5833,-564.852	0/1:14:9,5:9:312:5:180:-12.3376,0,-24.2009	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:65:34,31:34:1208:31:1108:-80.464,0,-89.4591	0/1:101:49,52:49:1709:52:1838:-135.295,0,-123.689	0/0:74:72,2:72:2529:2:72:0,-15.4395,-221.021	0/0:73:73,0:73:2547:0:0:0,-21.9752,-229.483	0/1:41:15,26:15:515:26:927:-71.4051,0,-34.3328	0/0:66:66,0:66:2296:0:0:0,-19.868,-206.901	0/0:64:64,0:64:2187:0:0:0,-19.2659,-197.085	0/0:48:48,0:48:1643:0:0:0,-14.4494,-148.145	0/0:51:51,0:51:1787:0:0:0,-15.3525,-161.112	0/1:38:11,27:11:379:27:964:-75.6377,0,-23.0014	0/0:29:29,0:29:982:0:0:0,-8.72987,-88.6837	0/0:26:26,0:26:896:0:0:0,-7.82678,-80.9507	0/1:15:6,9:6:212:9:320:-24.6236,0,-14.9093	0/1:79:35,44:35:1219:44:1564:-117.269,0,-86.2313	0/1:137:63,74:63:2185:74:2639:-196.516,0,-155.675	0/0:30:30,0:30:1039:0:0:0,-9.0309,-93.8184	0/1:77:37,40:37:1297:40:1422:-105.094,0,-93.8498	0/1:40:28,12:28:980:12:432:-27.18,0,-76.4717	0/0:26:26,0:26:916:0:0:0,-7.82678,-82.7565	0/1:173:100,68:100:3458:68:2431:-168.112,0,-260.503	0/1:112:69,43:69:2447:43:1536:-104.818,0,-186.77	0/1:25:12,13:12:424:13:459:-34.1183,0,-30.9707	0/0:205:205,0:205:7198:0:0:0,-61.7111,-647.736	0/1:121:72,49:72:2515:49:1760:-122.259,0,-190.18	0/1:85:42,43:42:1469:43:1540:-113.306,0,-106.915	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	.:.:.:.:.:.:.:.	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4108	0/0:6:6,0:6:199:0:0:0,-1.80618,-18.2355	0/0:133:133,0:133:4642:0:0:0,-40.037,-417.949	0/0:60:60,0:60:2077:0:0:0,-18.0618,-187.2	0/0:29:29,0:29:997:0:0:0,-8.72987,-89.0982	.:.:.:.:.:.:.:.	0/1:131:46,85:46:1597:85:3016:-232.225,0,-104.582	0/1:25:7,18:7:248:18:639:-50.3125,0,-15.1384	0/1:66:36,30:36:1264:30:1062:-76.022,0,-94.1937	0/1:56:27,29:27:952:29:1044:-77.4171,0,-69.1375	0/0:54:54,0:54:1877:0:0:0,-16.2556,-169.207	0/0:67:67,0:67:2356:0:0:0,-20.169,-212.299	0/0:66:66,0:66:2303:0:0:0,-19.868,-207.533	0/1:119:63,56:63:2205:56:1996:-144.09,0,-162.819	0/1:49:27,22:27:948:22:788:-56.4943,0,-70.8842	0/0:129:129,0:129:4505:0:0:0,-38.8329,-405.627	0/0:47:47,0:47:1627:0:0:0,-14.1484,-146.717	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:62:62,0:62:2173:0:0:0,-18.6639,-195.836	0/1:65:50,15:50:1764:15:536:-29.0079,0,-139.472	0/0:5:5,0:5:168:0:0:0,-1.50515,-15.4509	0/1:105:54,51:54:1898:51:1806:-131.212,0,-139.489	0/1:15:7,8:7:244:8:288:-21.752,0,-17.784	.:.:.:.:.:.:.:.	0/1:6:4,2:4:131:2:72:-5.03054,0,-10.3073	0/1:112:58,54:58:2034:54:1931:-140.351,0,-149.616	0/0:67:66,1:66:2293:1:36:0,-16.5707,-203.029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:152:79,73:79:2796:73:2579:-186.601,0,-206.126	0/1:119:59,59:59:2036:59:2087:-152.216,0,-147.63	0/1:65:31,34:31:1087:34:1196:-88.3765,0,-78.5714	0/0:72:72,0:72:2504:0:0:0,-21.6742,-225.616	0/0:142:142,0:142:4956:0:0:0,-42.7463,-446.202	0/0:85:85,0:85:3001:0:0:0,-25.5875,-270.323	0/0:19:19,0:19:667:0:0:0,-5.71957,-60.3546	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.753	0/0:36:36,0:36:1246:0:0:0,-10.8371,-112.44	0/1:19:9,10:9:316:10:360:-27.0224,0,-23.0593	0/1:73:25,48:25:871:48:1712:-132.391,0,-56.7303	0/0:48:48,0:48:1641:0:0:0,-14.4494,-147.975	0/0:106:106,0:106:3703:0:0:0,-31.9092,-333.478	0/0:167:167,0:167:5907:0:0:0,-50.272,-531.748	0/0:24:23,1:23:803:1:36:0,-3.62644,-68.9897	0/0:70:70,0:70:2427:0:0:0,-21.0721,-217.665	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:91:89,2:89:3135:2:72:0,-20.557,-275.543	0/0:74:74,0:74:2562:0:0:0,-22.2762,-230.834	0/0:192:192,0:192:6750:0:0:0,-57.7978,-607.457	0/0:39:39,0:39:1366:0:0:0,-11.7402,-123.237	0/0:60:60,0:60:2093:0:0:0,-18.0618,-188.631	0/1:41:19,22:19:676:22:775:-57.729,0,-48.8258	0/1:97:42,55:42:1472:55:1965:-147.923,0,-103.575	0/0:16:16,0:16:552:0:0:0,-4.81648,-50.0056	0/0:43:43,0:43:1509:0:0:0,-12.9443,-136.101	0/0:67:67,0:67:2345:0:0:0,-20.169,-211.309	0/0:16:16,0:16:544:0:0:0,-4.81648,-49.2797	0/1:50:18,32:18:644:32:1135:-87.4066,0,-43.2391	0/1:62:27,35:27:944:35:1251:-94.2304,0,-66.6102	0/0:166:166,0:166:5824:0:0:0,-49.971,-524.199	0/0:79:79,0:79:2795:0:0:0,-23.7814,-251.792
chr04	26708072	.	T	C	111905	PASS	AB=0.530846;ABP=26.0522;AC=145;AF=0.788043;AN=184;AO=5266;CIGAR=1X;DP=6588;DPB=6588;DPRA=0;EPP=10973.8;EPPR=2710.8;GTI=0;LEN=1;MEANALT=1.04348;MQM=59.9417;MQMR=59.9719;NS=92;NUMALT=1;ODDS=2.68146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184292;QR=46975;RO=1318;RPL=5211;RPP=10965.2;RPPR=2702.36;RPR=55;RUN=1;SAF=5265;SAP=11429.3;SAR=1;SRF=1317;SRP=2856.33;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:7,12:7:243:12:410:-31.4831,0,-16.487	1/1:54:0,54:0:0:54:1897:-171.006,-16.2556,0	1/1:108:0,108:0:0:108:3790:-341.292,-32.5112,0	1/1:208:0,208:0:0:208:7217:-649.598,-62.6142,0	0/1:16:6,10:6:216:10:351:-27.111,0,-14.974	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:69:29,40:29:1025:40:1415:-106.876,0,-71.7896	0/1:112:52,60:52:1845:60:2136:-158.791,0,-132.613	1/1:87:2,85:2:72:85:2990:-262.486,-19.3529,0	1/1:84:0,83:0:0:83:2950:-265.374,-24.9855,0	0/1:42:26,16:26:936:16:558:-37.9032,0,-71.9162	1/1:79:0,79:0:0:79:2715:-244.592,-23.7814,0	1/1:70:0,70:0:0:70:2410:-217.152,-21.0721,0	1/1:50:0,50:0:0:50:1701:-153.361,-15.0515,0	1/1:52:0,52:0:0:52:1791:-161.466,-15.6536,0	0/1:46:27,19:27:959:19:631:-43.2521,0,-72.778	1/1:31:0,31:0:0:31:1086:-98.0476,-9.33193,0	1/1:30:0,30:0:0:30:1031:-93.0949,-9.0309,0	0/1:15:9,6:9:324:6:201:-13.9016,0,-24.9822	0/1:82:44,38:44:1567:38:1360:-98.0161,0,-116.634	0/1:142:71,71:71:2533:71:2483:-180.977,0,-185.473	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	0/1:91:40,51:40:1427:51:1822:-136.865,0,-101.333	0/1:44:12,32:12:432:32:1103:-86.3193,0,-25.9759	1/1:32:0,32:0:0:32:1096:-98.9413,-9.63296,0	0/1:190:72,118:72:2560:118:4095:-311.541,0,-173.453	0/1:124:45,79:45:1616:79:2772:-212.392,0,-108.402	0/1:27:13,14:13:464:14:468:-34.3103,0,-33.9697	1/1:228:0,228:0:0:228:7952:-715.705,-68.6348,0	0/1:126:47,79:47:1684:79:2791:-213.5,0,-113.917	0/1:87:42,45:42:1508:45:1583:-116.567,0,-109.825	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:207:-18.9529,-1.80618,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:140:0,140:0:0:140:4867:-438.187,-42.1442,0	1/1:78:3,75:3:95:75:2619:-227.086,-14.6161,0	1/1:30:0,30:0:0:30:1033:-93.1873,-9.0309,0	.:.:.:.:.:.:.:.	0/1:137:85,52:85:3038:52:1842:-124.818,0,-232.403	0/1:25:18,7:18:648:7:224:-12.946,0,-51.1261	0/1:79:37,42:37:1311:42:1486:-110.251,0,-94.5095	0/1:61:30,31:30:1076:31:1086:-79.6847,0,-78.79	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:75:0,75:0:0:75:2633:-237.215,-22.5773,0	1/1:81:0,81:0:0:81:2839:-255.746,-24.3834,0	0/1:126:57,69:57:2031:69:2414:-179.54,0,-145.132	0/1:52:21,31:21:743:31:1096:-83.2945,0,-51.5398	1/1:149:0,149:0:0:149:5226:-470.479,-44.8535,0	1/1:53:0,53:0:0:53:1834:-165.334,-15.9546,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:71:0,71:0:0:71:2494:-224.711,-21.3731,0	0/1:70:17,53:17:597:53:1878:-148.221,0,-32.984	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:115:51,64:51:1816:64:2250:-168.142,0,-129.103	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	.:.:.:.:.:.:.:.	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:119:56,63:56:1986:63:2212:-163.518,0,-143.19	1/1:70:1,69:1:36:69:2411:-213.645,-17.4738,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:158:71,86:71:2544:86:3060:-228.009,0,-181.572	0/1:132:61,71:61:2192:71:2506:-186.054,0,-157.806	0/1:72:34,38:34:1196:38:1294:-95.0778,0,-86.2685	1/1:86:0,86:0:0:86:3046:-274.371,-25.8886,0	1/1:158:0,158:0:0:158:5592:-503.405,-47.5627,0	1/1:97:0,95:0:0:95:3341:-300.545,-28.5979,0	1/1:20:0,20:0:0:20:703:-63.5935,-6.0206,0	1/1:35:0,35:0:0:35:1200:-108.297,-10.5361,0	1/1:34:0,34:0:0:34:1160:-104.698,-10.235,0	0/1:19:8,11:8:288:11:377:-28.5384,0,-20.5478	0/1:78:49,29:49:1736:29:1031:-69.6231,0,-133.042	1/1:53:0,53:0:0:53:1832:-165.155,-15.9546,0	1/1:110:0,110:0:0:110:3902:-351.375,-33.1133,0	1/1:185:0,185:0:0:185:6496:-584.724,-55.6906,0	1/1:37:1,36:1:36:36:1276:-111.545,-7.53984,0	1/1:84:0,84:0:0:84:2943:-265.103,-25.2865,0	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	1/1:98:2,96:2:72:96:3374:-297.04,-22.6642,0	1/1:87:0,87:0:0:87:3024:-272.375,-26.1896,0	1/1:211:0,211:0:0:211:7422:-668.021,-63.5173,0	1/1:36:0,36:0:0:36:1264:-114.06,-10.8371,0	1/1:66:0,66:0:0:66:2318:-208.862,-19.868,0	0/1:41:22,19:22:775:19:667:-48.0124,0,-57.729	0/1:104:54,50:54:1927:50:1783:-129.445,0,-142.399	1/1:15:0,15:0:0:15:514:-46.5838,-4.51545,0	1/1:47:0,47:0:0:47:1625:-146.533,-14.1484,0	1/1:68:0,68:0:0:68:2329:-209.867,-20.47,0	1/1:20:0,20:0:0:20:680:-61.5154,-6.0206,0	0/1:55:33,22:33:1161:22:723:-48.8176,0,-88.2381	0/1:64:37,27:37:1324:27:939:-65.5549,0,-100.196	1/1:183:2,181:2:72:181:6294:-559.69,-48.2518,0	1/1:84:0,84:0:0:84:2952:-265.916,-25.2865,0
chr04	26788359	.	T	A	121921	PASS	AB=0.592996;ABP=196.063;AC=148;AF=0.787234;AN=188;AO=5570;CIGAR=1X;DP=6626;DPB=6626;DPRA=0;EPP=11925;EPPR=2220.61;GTI=3;LEN=1;MEANALT=1.03191;MQM=59.9914;MQMR=59.9772;NS=94;NUMALT=1;ODDS=1.04045;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199489;QR=37634;RO=1053;RPL=19;RPP=11933.6;RPPR=2220.61;RPR=5551;RUN=1;SAF=5569;SAP=12089.4;SAR=1;SRF=1053;SRP=2289.57;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:10,16:10:356:16:576:-44.3482,0,-24.5545	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:130:0,130:0:0:130:4652:-418.842,-39.1339,0	1/1:173:1,172:1:36:172:6148:-549.822,-48.4799,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:77:31,46:31:1112:46:1656:-126.149,0,-77.212	0/1:80:35,45:35:1225:45:1607:-120.837,0,-86.469	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:117:0,117:0:0:117:4180:-376.38,-35.2205,0	0/1:42:20,22:20:720:22:788:-58.6015,0,-52.4855	1/1:77:0,76:0:0:76:2732:-245.762,-22.8783,0	1/1:62:0,62:0:0:62:2213:-199.433,-18.6639,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:79:0,79:0:0:79:2844:-256.128,-23.7814,0	0/1:38:24,14:24:864:14:496:-33.5351,0,-66.6434	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/1:90:37,53:37:1324:53:1900:-144.185,0,-92.3694	0/1:167:62,105:62:2224:105:3766:-288.866,0,-150.152	1/1:49:0,49:0:0:49:1747:-157.514,-14.7505,0	0/1:93:19,74:19:684:74:2633:-209.217,0,-33.8945	0/1:41:17,24:17:608:24:853:-64.7472,0,-42.7098	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:130:53,77:53:1896:77:2752:-208.787,0,-131.514	0/1:224:85,139:85:3043:139:4958:-378.94,0,-206.668	0/1:21:6,15:6:216:15:536:-42.2532,0,-13.4689	1/1:199:0,199:0:0:199:7156:-644.092,-59.905,0	0/1:95:47,48:47:1672:48:1724:-126.848,0,-122.169	0/1:114:51,63:51:1832:63:2260:-169.345,0,-130.843	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:189:0,189:0:0:189:6800:-612.067,-56.8947,0	1/1:64:0,64:0:0:64:2279:-205.372,-19.2659,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:60:29,31:29:1031:31:1108:-81.9692,0,-75.0408	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/1:43:18,25:18:644:25:892:-67.6554,0,-45.3463	0/1:55:23,32:23:824:32:1141:-86.4415,0,-57.9267	1/1:54:0,54:0:0:54:1928:-173.796,-16.2556,0	1/1:74:0,74:0:0:74:2637:-237.576,-22.2762,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:97:29,68:29:1040:68:2427:-189.485,0,-64.7145	0/1:45:17,28:17:593:28:1008:-77.49,0,-40.1484	1/1:113:0,113:0:0:113:4020:-361.987,-34.0164,0	1/1:85:0,85:0:0:85:3026:-272.568,-25.5876,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:36:18,18:18:640:18:644:-47.4535,0,-47.0922	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:102:33,69:33:1188:69:2468:-191.669,0,-76.5235	0/1:36:5,31:5:176:31:1108:-89.1935,0,-5.34794	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:20:5,15:5:180:15:540:-42.9159,0,-10.5315	0/1:51:20,31:20:720:31:1107:-84.5876,0,-49.7762	1/1:61:1,60:1:36:60:2148:-189.989,-14.7646,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:191:81,110:81:2895:110:3937:-297.025,0,-203.289	0/1:80:33,47:33:1176:47:1688:-128.125,0,-82.0654	0/1:75:23,52:23:824:52:1863:-145.371,0,-51.9061	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:140:3,137:3:108:137:4882:-429.444,-32.069,0	1/1:173:0,173:0:0:173:6207:-558.725,-52.0782,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:67:0,67:0:0:67:2402:-216.437,-20.169,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:17:3,14:3:108:14:500:-40.2187,0,-4.95766	0/1:74:30,44:30:1047:44:1580:-120.215,0,-72.2603	1/1:166:0,166:0:0:166:5940:-534.708,-49.971,0	1/1:185:0,185:0:0:185:6618:-595.7,-55.6906,0	1/1:189:0,189:0:0:189:6784:-610.63,-56.8947,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:171:2,169:2:72:169:6048:-537.587,-44.6394,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:90:0,90:0:0:90:3213:-289.391,-27.0927,0	1/1:170:0,170:0:0:170:6085:-547.75,-51.1751,0	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:35:17,18:17:604:18:644:-47.7545,0,-44.1546	0/1:98:40,58:40:1440:58:2076:-157.609,0,-100.397	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:64:0,63:0:0:63:2256:-202.982,-18.9649,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:72:39,33:39:1396:33:1188:-85.5544,0,-104.265	0/1:57:30,27:30:1072:27:964:-69.9175,0,-79.6337	1/1:210:0,209:0:0:209:7500:-674.679,-62.9153,0	1/1:107:0,107:0:0:107:3848:-346.514,-32.2102,0
chr04	26985598	.	T	C	37793.9	PASS	AB=0.508156;ABP=5.56057;AC=39;AF=0.209677;AN=186;AO=2255;CIGAR=1X;DP=10081;DPB=10081;DPRA=1.25985;EPP=4847.7;EPPR=16217.7;GTI=0;LEN=1;MEANALT=1.04545;MQM=59.1357;MQMR=55.9815;NS=93;NUMALT=1;ODDS=1.32092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79931;QR=280126;RO=7823;RPL=6;RPP=4847.7;RPPR=16217.7;RPR=2249;RUN=1;SAF=2255;SAP=4899.68;SAR=0;SRF=7823;SRP=16990.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:20,17:20:720:17:599:-43.1,0,-53.9622	0/0:177:177,0:177:6344:0:0:0,-53.2823,-570.823	0/0:140:140,0:140:5005:0:0:0,-42.1442,-449.964	0/0:199:199,0:199:7115:0:0:0,-59.905,-638.208	0/1:46:21,25:21:756:25:882:-65.8272,0,-54.4914	0/1:63:34,29:34:1220:29:1019:-73.028,0,-90.9217	0/1:189:95,94:95:3395:94:3315:-241.634,0,-248.197	0/1:245:133,112:133:4760:112:3928:-279.684,0,-354.748	0/0:139:139,0:139:4960:0:0:0,-41.8432,-446.49	0/0:178:174,4:174:6240:4:144:0,-40.916,-546.923	0/1:65:30,35:30:1080:35:1253:-93.4937,0,-77.773	0/0:100:100,0:100:3583:0:0:0,-30.103,-322.572	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.824	0/0:131:131,0:131:4682:0:0:0,-39.4349,-420.952	0/0:79:79,0:79:2815:0:0:0,-23.7814,-252.602	0/1:92:45,47:45:1612:47:1656:-121.533,0,-117.669	0/0:85:85,0:85:3047:0:0:0,-25.5875,-274.427	0/0:111:111,0:111:3979:0:0:0,-33.4143,-358.242	0/1:42:25,17:25:896:17:612:-42.7702,0,-68.3146	0/1:122:52,70:52:1860:70:2483:-186.953,0,-130.24	0/1:130:67,63:67:2404:63:2228:-161.65,0,-177.397	0/0:53:53,0:53:1899:0:0:0,-15.9546,-170.801	0/1:123:73,50:73:2602:50:1762:-121.774,0,-196.824	0/1:126:72,54:72:2579:54:1907:-133.934,0,-194.429	0/0:69:68,0:68:2428:0:0:0,-20.47,-218.301	0/1:332:167,165:167:5974:165:5830:-424.502,0,-435.792	0/1:270:123,147:123:4411:147:5240:-389.911,0,-315.684	0/1:63:30,33:30:1076:33:1158:-85.5179,0,-78.188	0/0:234:234,0:234:8395:0:0:0,-70.441,-750.389	0/1:195:84,111:84:2992:111:3951:-296.974,0,-210.811	0/1:107:52,55:52:1872:55:1953:-143.779,0,-135.698	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.63756	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:288:287,1:287:10306:1:32:0,-83.5756,-920.844	0/0:103:103,0:103:3686:0:0:0,-31.0061,-331.909	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.165	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:180:67,113:67:2386:113:4016:-307.257,0,-160.811	0/1:39:24,15:24:851:15:536:-36.823,0,-65.1408	0/1:127:64,63:64:2296:63:2227:-162.464,0,-168.637	0/1:103:52,50:52:1872:50:1758:-127.322,0,-137.036	0/0:99:99,0:99:3504:0:0:0,-29.802,-314.807	0/0:116:116,0:116:4148:0:0:0,-34.9195,-372.258	0/0:120:119,1:119:4251:1:36:0,-32.5568,-379.032	0/1:128:66,62:66:2364:62:2200:-159.376,0,-173.814	0/1:133:64,69:64:2300:69:2450:-180.654,0,-166.463	0/0:129:129,0:129:4616:0:0:0,-38.8329,-414.591	0/0:125:125,0:125:4476:0:0:0,-37.6287,-400.877	.:.:.:.:.:.:.:.	0/0:116:116,0:116:4150:0:0:0,-34.9195,-373.591	0/1:33:15,18:15:532:18:640:-47.9953,0,-38.0675	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.4524	0/1:81:29,52:29:1031:52:1856:-142.851,0,-68.6324	0/1:82:34,48:34:1220:48:1700:-128.567,0,-85.0145	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9161	0/1:11:3,8:3:104:8:284:-22.592,0,-6.34374	0/1:119:63,56:63:2256:56:2000:-144.419,0,-166.958	0/0:140:140,0:140:5020:0:0:0,-42.1442,-450.113	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.056	0/1:93:61,32:61:2192:32:1144:-75.2151,0,-168.817	0/1:217:107,110:107:3828:110:3888:-284.646,0,-278.629	0/1:113:68,45:68:2432:45:1595:-109.79,0,-185.051	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.266	0/0:190:190,0:190:6816:0:0:0,-57.1957,-611.517	0/0:100:100,0:100:3579:0:0:0,-30.103,-321.132	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.831	0/0:129:129,0:129:4620:0:0:0,-38.8329,-414.161	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3061	0/1:114:62,52:62:2211:52:1852:-132.574,0,-164.666	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/0:208:208,0:208:7405:0:0:0,-62.6142,-666.41	0/0:158:158,0:158:5654:0:0:0,-47.5627,-506.899	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.565	0/0:146:141,5:141:5068:5:171:0,-28.2249,-440.502	0/1:4:2,2:2:68:2:68:-5.25359,0,-5.25359	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.353	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.741	0/0:205:203,1:203:7275:1:32:0,-58.5419,-649.244	0/0:138:138,0:138:4964:0:0:0,-41.5421,-445.275	0/0:105:105,0:105:3768:0:0:0,-31.6081,-338.208	0/1:132:65,67:65:2324:67:2392:-175.715,0,-168.923	0/1:201:82,119:82:2943:119:4219:-319.28,0,-203.812	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.084	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.237	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.159	0/0:69:69,0:69:2476:0:0:0,-20.7711,-222.95	0/1:117:61,56:61:2187:56:1992:-144.294,0,-161.87	0/1:118:50,68:50:1800:68:2423:-181.965,0,-126.484	0/0:110:110,0:110:3931:0:0:0,-33.1133,-352.993	0/0:153:153,0:153:5483:0:0:0,-46.0576,-492.067
chr04	26985620	.	AATGG	CATGA,CATGG	214407	PASS	AB=0.49943,0.496924;ABP=3.02267,3.37098;AC=147,39;AF=0.790323,0.209677;AN=186;AO=7869,2191;CIGAR=1X3M1X,1X4M;DP=10085;DPB=10088;DPRA=0,1.23634;EPP=17090.3,4760.71;EPPR=5.18177;GTI=0;LEN=5,1;MEANALT=1.73118,2.37778;MQM=55.8705,59.3158;MQMR=60;NS=93;NUMALT=2;ODDS=3.20462;PAIRED=0,0;PAIREDR=0;PAO=5,5;PQA=171.5,171.5;PQR=0;PRO=6;QA=277537,77568;QR=36;RO=1;RPL=7867,2191;RPP=17073,4760.71;RPPR=5.18177;RPR=2,0;RUN=1,1;SAF=7867,2191;SAP=17073,4760.71;SAR=2,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,19,16:0:0:19,16:674,559:-100.709,-45.8211,-40.1016,-55.2394,0,-50.4229	1/1:176:0,176,0:0:0:176,0:6231,0:-560.757,-52.9813,0,-560.757,-52.9813,-560.757	1/1:138:0,138,0:0:0:138,0:4871,0:-438.242,-41.5421,0,-438.242,-41.5421,-438.242	1/1:199:0,198,0:0:0:198,0:6963,0:-624.472,-59.6039,0,-624.472,-59.6039,-624.472	1/2:45:0,20,25:0:0:20,25:717,900:-132.217,-73.7668,-67.7462,-58.8091,0,-51.2833	1/2:59:0,33,26:0:0:33,26:1164,921:-169.91,-75.35,-65.416,-94.9133,0,-87.0865	1/2:187:0,98,88:0:0:98,88:3440,3140:-535.47,-256.057,-226.556,-279.516,0,-253.025	1/2:245:0,135,108:0:0:135,108:4730,3812:-695.153,-310.33,-269.691,-384.832,0,-352.321	1/1:139:0,139,0:0:0:139,0:4895,0:-440.669,-41.8432,0,-440.669,-41.8432,-440.669	1/1:178:0,178,0:0:0:178,0:6287,0:-563.445,-53.5833,0,-563.445,-53.5833,-563.445	1/2:65:0,29,36:0:0:29,36:1037,1258:-186.988,-102.594,-93.8646,-84.6894,0,-73.8523	1/1:100:0,99,0:0:0:99,0:3510,0:-315.73,-29.802,0,-315.73,-29.802,-315.73	1/1:76:0,76,0:0:0:76,0:2674,0:-240.62,-22.8783,0,-240.62,-22.8783,-240.62	1/1:131:0,130,0:0:0:130,0:4591,0:-412.413,-39.1339,0,-412.413,-39.1339,-412.413	1/1:79:0,79,0:0:0:79,0:2787,0:-249.378,-23.7814,0,-249.378,-23.7814,-249.378	1/2:92:0,46,45:0:0:46,45:1616,1593:-261.205,-129.679,-115.832,-131.522,0,-117.975	1/1:83:0,83,0:0:0:83,0:2930,0:-263.906,-24.9855,0,-263.906,-24.9855,-263.906	1/1:109:0,109,0:0:0:109,0:3857,0:-347.279,-32.8123,0,-347.279,-32.8123,-347.279	1/2:42:0,25,17:0:0:25,17:892,591:-121.119,-48.3978,-40.872,-73.072,0,-67.9545	1/2:121:0,52,69:0:0:52,69:1848,2455:-350.27,-200.389,-184.735,-150.236,0,-129.465	1/2:129:0,65,63:0:0:65,63:2274,2229:-366.475,-181.547,-161.98,-184.92,0,-165.955	1/1:53:0,53,0:0:0:53,0:1862,0:-167.498,-15.9546,0,-167.498,-15.9546,-167.498	1/2:124:0,75,49:0:0:75,49:2632,1714:-353.479,-139.754,-117.177,-214.075,0,-199.325	1/2:123:0,72,51:0:0:72,51:2538,1815:-354.822,-148.18,-126.506,-206.938,0,-191.585	1/1:69:0,69,0:0:0:69,0:2439,0:-219.607,-20.7711,0,-219.607,-20.7711,-219.607	1/2:334:0,171,163:0:0:171,163:6028,5789:-960.415,-471.644,-420.168,-489.125,0,-440.057	1/2:268:0,124,143:0:0:124,143:4376,5075:-769.706,-413.541,-376.213,-356.276,0,-313.229	1/2:65:0,32,32:0:0:32,32:1131,1123:-182.667,-91.3308,-81.6979,-91.3306,0,-81.6976	1/1:234:0,233,0:0:0:233,0:8225,0:-735.813,-70.14,0,-735.813,-70.14,-735.813	1/2:196:1,84,110:1:36:84,110:2957,3898:-554.941,-314.518,-292.169,-237.781,0,-207.605	1/2:108:0,53,55:0:0:53,55:1865,1980:-313.006,-161.812,-145.857,-151.549,0,-134.992	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:6:0,3,3:0:0:3,3:108,108:-17.9555,-9.17208,-8.26899,-9.14271,0,-8.23962	1/1:6:0,6,0:0:0:6,0:196,0:-17.9606,-1.80618,0,-17.9606,-1.80618,-17.9606	1/1:7:0,7,0:0:0:7,0:251,0:-22.9379,-2.10721,0,-22.9379,-2.10721,-22.9379	1/1:5:0,5,0:0:0:5,0:175,0:-16.0931,-1.50515,0,-16.0931,-1.50515,-16.0931	1/1:290:0,287,1:0:0:287,1:10127,36:-908.082,-86.3956,0,-905.144,-83.4562,-904.843	1/1:102:0,102,0:0:0:102,0:3578,0:-322.217,-30.7051,0,-322.217,-30.7051,-322.217	1/1:84:0,84,0:0:0:84,0:2982,0:-268.569,-25.2865,0,-268.569,-25.2865,-268.569	1/1:3:0,3,0:0:0:3,0:101,0:-9.42337,-0.90309,0,-9.42337,-0.90309,-9.42337	1/2:176:0,68,106:0:0:68,106:2407,3796:-505.458,-309.454,-288.984,-196.002,0,-164.093	1/2:38:0,22,16:0:0:22,16:780,561:-109.521,-46.0006,-39.378,-63.8727,0,-59.0563	1/2:124:0,67,57:0:0:67,57:2381,2028:-359.626,-165.634,-145.465,-194.348,0,-177.189	1/2:103:0,53,50:0:0:53,50:1861,1747:-293.094,-142.344,-126.39,-151.099,0,-136.048	1/1:100:0,100,0:0:0:100,0:3509,0:-315.335,-30.103,0,-315.335,-30.103,-315.335	1/1:117:0,117,0:0:0:117,0:4104,0:-368.5,-35.2205,0,-368.5,-35.2205,-368.5	1/1:122:0,122,0:0:0:122,0:4307,0:-387.601,-36.7257,0,-387.601,-36.7257,-387.601	1/2:129:0,69,60:0:0:69,60:2427,2109:-368.802,-171.829,-151.058,-197.324,0,-179.262	1/2:135:0,67,67:0:0:67,67:2361,2379:-385.367,-193.827,-173.658,-191.537,0,-171.368	1/1:129:0,129,0:0:0:129,0:4579,0:-411.276,-38.8329,0,-411.276,-38.8329,-411.276	1/1:131:0,131,0:0:0:131,0:4633,0:-415.753,-39.4349,0,-415.753,-39.4349,-415.753	.:.:.:.:.:.:.:.	1/1:116:0,116,0:0:0:116,0:4092,0:-368.13,-34.9195,0,-368.13,-34.9195,-368.13	1/2:33:0,15,18:0:0:15,18:526,640:-95.1659,-52.5108,-47.9953,-43.0073,0,-37.5888	1/1:14:0,14,0:0:0:14,0:491,0:-44.4556,-4.21442,0,-44.4556,-4.21442,-44.4556	1/2:79:0,30,49:0:0:30,49:1067,1718:-226.964,-140.122,-131.091,-87.1962,0,-72.4457	1/2:83:0,35,48:0:0:35,48:1222,1692:-236.954,-138.079,-127.543,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chr04	26992858	.	G	T	84964	PASS	AB=0.492902;ABP=3.99681;AC=146;AF=0.776596;AN=188;AO=4027;CIGAR=1X;DP=5176;DPB=5176;DPRA=18.5412;EPP=8747.53;EPPR=2476.35;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9871;MQMR=60;NS=94;NUMALT=1;ODDS=0.335969;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142830;QR=40298;RO=1147;RPL=4027;RPP=8747.53;RPPR=2493.69;RPR=0;RUN=1;SAF=4027;SAP=8747.53;SAR=0;SRF=1145;SRP=2476.35;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:28,18:28:996:18:648:-44.8045,0,-76.1075	1/1:33:0,33:0:0:33:1161:-104.796,-9.93399,0	1/1:87:0,87:0:0:87:3107:-279.858,-26.1896,0	1/1:141:0,141:0:0:141:4964:-446.873,-42.4452,0	0/1:14:12,2:12:424:2:72:-2.6223,0,-34.282	0/1:16:6,10:6:216:10:351:-27.1102,0,-14.974	0/1:49:30,19:30:1072:19:657:-44.6997,0,-82.042	0/1:52:13,39:13:464:39:1372:-108.123,0,-26.4439	1/1:63:0,63:0:0:63:2216:-199.704,-18.9649,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:69:27,42:27:933:42:1500:-114.524,0,-63.5095	1/1:86:0,86:0:0:86:3023:-272.304,-25.8886,0	1/1:62:0,62:0:0:62:2204:-198.626,-18.6639,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:45:0,45:0:0:45:1599:-144.199,-13.5464,0	0/1:39:17,22:17:591:22:780:-58.7815,0,-41.7751	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	0/1:35:20,15:20:712:15:510:-35.686,0,-53.8706	0/1:82:42,40:42:1459:40:1423:-103.682,0,-106.916	0/1:70:38,32:38:1338:32:1140:-81.837,0,-99.6464	1/1:55:0,55:0:0:55:1949:-175.684,-16.5567,0	0/1:60:27,33:27:950:33:1163:-86.9132,0,-67.7516	0/1:27:12,15:12:424:15:532:-40.0853,0,-30.3686	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:163:95,68:95:3328:68:2401:-167.279,0,-250.668	0/1:152:90,62:90:3159:62:2219:-154.217,0,-238.78	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:114:0,114:0:0:114:4054:-365.048,-34.3174,0	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/1:62:38,24:38:1346:24:864:-59.4187,0,-102.775	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:1,6:1:36:6:201:-16.3098,0,-1.49106	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	0/1:18:2,16:2:72:16:555:-44.8575,0,-1.41818	1/1:172:0,172:0:0:172:6092:-548.385,-51.7772,0	1/1:61:0,61:0:0:61:2176:-196.107,-18.3628,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:67:32,35:32:1119:35:1230:-90.8334,0,-80.8478	0/1:31:17,14:17:576:14:500:-36.0042,0,-42.826	0/1:68:39,29:39:1368:29:1025:-72.0907,0,-102.946	0/1:54:23,31:23:803:31:1091:-82.2431,0,-56.3327	1/1:46:0,46:0:0:46:1618:-145.908,-13.8474,0	1/1:65:0,65:0:0:65:2295:-206.809,-19.567,0	1/1:50:0,50:0:0:50:1766:-159.223,-15.0515,0	0/1:87:39,48:39:1392:48:1695:-126.643,0,-99.3894	0/1:52:29,23:29:1014:23:828:-59.1906,0,-75.9139	1/1:56:0,56:0:0:56:1986:-179.013,-16.8577,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:51:28,23:28:977:23:822:-58.9501,0,-72.888	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:65:29,36:29:1014:36:1283:-96.2057,0,-72.003	0/1:45:19,26:19:657:26:932:-70.6525,0,-45.9041	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:50:23,27:23:820:27:938:-69.6786,0,-59.071	1/1:107:0,107:0:0:107:3804:-342.558,-32.2102,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:72:40,32:40:1418:32:1125:-79.8827,0,-106.242	0/1:83:42,41:42:1499:41:1453:-106.078,0,-110.218	0/1:37:9,28:9:306:28:988:-78.0958,0,-16.7305	1/1:36:0,36:0:0:36:1262:-113.878,-10.8371,0	1/1:88:0,88:0:0:88:3147:-283.455,-26.4906,0	1/1:76:0,76:0:0:76:2682:-241.626,-22.8783,0	1/1:48:0,48:0:0:48:1703:-153.555,-14.4494,0	1/1:38:0,38:0:0:38:1347:-121.529,-11.4391,0	1/1:57:0,57:0:0:57:2039:-183.781,-17.1587,0	0/1:20:11,9:11:387:9:324:-23.4853,0,-29.1453	0/1:109:64,45:64:2279:45:1580:-109.675,0,-172.559	1/1:50:0,49:0:0:49:1730:-155.623,-14.7505,0	1/1:126:0,126:0:0:126:4485:-403.82,-37.9298,0	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	1/1:35:0,35:0:0:35:1229:-110.912,-10.5361,0	1/1:37:0,37:0:0:37:1315:-118.651,-11.1381,0	0/1:14:8,6:8:280:6:216:-15.5761,0,-21.3249	1/1:54:2,52:2:72:52:1842:-159.222,-9.4189,0	1/1:48:0,48:0:0:48:1707:-153.725,-14.4494,0	1/1:94:0,94:0:0:94:3343:-301.088,-28.2968,0	1/1:57:0,57:0:0:57:2011:-181.262,-17.1587,0	1/1:71:0,71:0:0:71:2496:-224.894,-21.3731,0	0/1:26:10,16:10:356:16:559:-42.8108,0,-24.5545	0/1:101:48,52:48:1619:52:1847:-136.135,0,-115.617	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:67:0,67:0:0:67:2341:-210.946,-20.169,0	1/1:67:0,67:0:0:67:2388:-215.178,-20.169,0	1/1:64:0,64:0:0:64:2253:-203.032,-19.2659,0	0/1:158:77,81:77:2705:81:2897:-213.403,0,-196.132	0/1:48:32,16:32:1117:16:572:-37.364,0,-86.386	1/1:34:0,34:0:0:34:1204:-108.665,-10.235,0	1/1:74:0,74:0:0:74:2634:-237.306,-22.2762,0
chr04	27039688	.	T	C	10608.3	PASS	AB=0.459599;ABP=24.9426;AC=40;AF=0.215054;AN=186;AO=712;CIGAR=1X;DP=3570;DPB=3570;DPRA=1.10105;EPP=1549.1;EPPR=6204.74;GTI=1;LEN=1;MEANALT=1.02439;MQM=42.6011;MQMR=59.9258;NS=93;NUMALT=1;ODDS=0.124629;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25401;QR=101525;RO=2856;RPL=0;RPP=1549.1;RPPR=6204.74;RPR=712;RUN=1;SAF=712;SAP=1549.1;SAR=0;SRF=2856;SRP=6204.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:12,9:12:413:9:324:-22.6746,0,-31.1762	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.878	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:69:69,0:69:2447:0:0:0,-20.7711,-220.113	0/1:35:14,21:14:496:21:741:-53.0502,0,-34.4378	0/1:10:3,7:3:108:7:242:-18.5331,0,-7.06487	0/1:42:27,15:27:960:15:532:-34.5724,0,-74.073	0/1:37:19,18:19:676:18:629:-44.387,0,-50.0299	0/0:29:29,0:29:1024:0:0:0,-8.72987,-92.4726	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.403	0/1:29:21,8:21:756:8:288:-16.3205,0,-59.6374	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.152	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:15:6,9:6:216:9:320:-23.937,0,-15.2751	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.169	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:22:11,11:11:396:11:396:-28.7386,0,-29.3597	0/1:48:24,24:24:856:24:860:-61.6884,0,-62.9117	0/1:31:17,14:17:608:14:504:-35.3849,0,-45.7201	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1352	0/1:24:14,10:14:500:10:360:-24.3064,0,-38.1115	0/1:44:22,22:22:772:22:792:-56.2884,0,-56.556	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:132:98,34:98:3472:34:1209:-66.076,0,-272.942	0/1:60:35,25:35:1232:25:892:-60.8863,0,-93.1222	0/1:11:6,5:6:216:5:176:-12.5595,0,-16.4792	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.028	0/1:71:40,31:40:1424:31:1112:-76.4026,0,-107.082	0/1:69:31,38:31:1100:38:1341:-96.0812,0,-78.5392	0/1:3:2,1:2:72:1:36:-2.61792,0,-5.93363	0/1:7:3,4:3:108:4:144:-10.9205,0,-7.73264	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.34	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.295	0/0:21:21,0:21:734:0:0:0,-6.32163,-66.3804	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:70:31,39:31:1089:39:1400:-102.561,0,-77.2452	0/1:20:10,10:10:360:10:360:-26.0343,0,-26.7237	0/1:49:20,29:20:720:29:1044:-75.7005,0,-50.3783	0/1:21:9,12:9:309:12:423:-30.7403,0,-21.8191	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:44:44,0:44:1537:0:0:0,-13.2453,-138.62	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.56	0/1:96:51,44:51:1828:44:1559:-104.737,0,-135.851	0/1:42:20,22:20:712:22:792:-57.4771,0,-51.761	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:38:38,0:38:1344:0:0:0,-11.4391,-121.224	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.149	0/1:12:7,5:7:248:5:180:-12.5001,0,-19.0518	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:47:33,14:33:1164:14:492:-28.5839,0,-90.9185	0/1:14:8,6:8:284:6:212:-14.5811,0,-21.6889	.:.:.:.:.:.:.:.	0/1:9:2,7:2:72:7:252:-19.7776,0,-4.12745	0/1:35:21,14:21:748:14:500:-33.8595,0,-57.1092	0/0:112:111,1:111:3947:1:32:0,-31.0607,-352.769	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:61:28,33:28:988:33:1176:-85.1625,0,-70.8711	0/1:75:39,36:39:1368:36:1288:-91.1813,0,-100.841	0/1:42:30,12:30:1068:12:432:-25.7357,0,-83.7888	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.292	0/0:43:43,0:43:1516:0:0:0,-12.9443,-136.733	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:26:26,0:26:912:0:0:0,-7.82678,-82.3959	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/1:11:4,7:4:144:7:252:-19.1341,0,-10.0023	0/1:57:29,28:29:1028:28:1008:-72.3476,0,-75.6743	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.921	0/0:62:61,0:61:2164:0:0:0,-18.3628,-194.797	0/0:71:71,0:71:2520:0:0:0,-21.3731,-227.053	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.04	0/0:28:28,0:28:988:0:0:0,-8.42884,-89.2339	0/1:5:1,4:1:36:4:144:-11.0648,0,-2.09312	0/0:52:52,0:52:1844:0:0:0,-15.6536,-166.24	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.743	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.368	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:34:13,21:13:464:21:752:-55.8183,0,-31.8625	0/1:45:23,22:23:824:22:784:-55.9332,0,-60.937	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:77:47,30:47:1675:30:1061:-70.1636,0,-127.857	0/1:14:4,10:4:144:10:360:-27.8268,0,-9.0992	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.603	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825
chr04	27039724	.	C	A	10547.7	PASS	AB=0.460183;ABP=24.107;AC=40;AF=0.215054;AN=186;AO=707;CIGAR=1X;DP=3539;DPB=3539;DPRA=1.09488;EPP=1538.24;EPPR=6148.28;GTI=1;LEN=1;MEANALT=1.04762;MQM=42.5743;MQMR=59.9166;NS=93;NUMALT=1;ODDS=0.915136;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25267;QR=100381;RO=2830;RPL=707;RPP=1538.24;RPPR=6139.59;RPR=0;RUN=1;SAF=707;SAP=1538.24;SAR=0;SRF=2829;SRP=6139.59;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:13,10:13:464:10:360:-25.255,0,-35.1738	0/0:45:45,0:45:1582:0:0:0,-13.5463,-142.65	0/0:38:38,0:38:1333:0:0:0,-11.4391,-120.268	0/0:63:63,0:63:2226:0:0:0,-18.9649,-200.601	0/1:33:13,20:13:468:20:701:-50.6577,0,-32.5257	0/1:10:4,6:4:125:6:216:-15.8545,0,-8.54832	0/1:44:28,16:28:992:16:576:-37.749,0,-76.3491	0/1:37:19,18:19:680:18:648:-46.0459,0,-50.3911	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.657	0/1:28:20,8:20:712:8:288:-16.6215,0,-55.9778	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7675	0/0:49:49,0:49:1742:0:0:0,-14.7505,-157.061	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:15:6,9:6:216:9:324:-24.2597,0,-15.2751	0/0:36:36,0:36:1253:0:0:0,-10.8371,-113.067	0/0:21:21,0:21:734:0:0:0,-6.32163,-66.3804	0/1:21:11,10:11:377:10:360:-25.8571,0,-27.9363	0/1:46:21,25:21:752:25:896:-64.5482,0,-54.1589	0/1:31:17,14:17:612:14:504:-35.3849,0,-46.0815	0/0:31:31,0:31:1104:0:0:0,-9.33193,-98.0227	0/1:24:14,10:14:504:10:347:-23.6393,0,-38.4734	0/1:41:21,20:21:748:20:716:-50.508,0,-55.3031	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:130:95,35:95:3384:35:1248:-69.6713,0,-265.643	0/1:57:34,23:34:1220:23:828:-56.0919,0,-92.9481	0/1:11:6,5:6:216:5:180:-12.8853,0,-16.4792	0/0:84:84,0:84:2947:0:0:0,-25.2865,-265.461	0/1:72:42,30:42:1476:30:1072:-72.5887,0,-111.455	0/1:69:31,38:31:1108:38:1356:-96.8528,0,-79.2599	0/1:3:2,1:2:72:1:32:-2.26373,0,-5.93363	0/1:6:2,4:2:72:4:144:-11.2216,0,-5.03054	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:83:83,0:83:2909:0:0:0,-24.9855,-262.042	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.564	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:70:31,39:31:1112:39:1400:-102.306,0,-79.3192	0/1:20:10,10:10:356:10:360:-26.0343,0,-26.3606	0/1:48:21,27:21:756:27:953:-69.5799,0,-53.9178	0/1:20:8,12:8:273:12:428:-31.4751,0,-18.8796	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:45:45,0:45:1595:0:0:0,-13.5463,-143.84	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.97	0/1:97:53,44:53:1878:44:1568:-104.239,0,-140.097	0/1:43:22,20:22:779:20:716:-50.4144,0,-57.432	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:37:36,1:36:1259:1:36:0,-7.5713,-110.039	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:60:60,0:60:2091:0:0:0,-18.0618,-188.458	0/1:12:7,5:7:252:5:180:-12.5001,0,-19.4166	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:46:32,14:32:1140:14:502:-29.8052,0,-89.0618	0/1:14:8,6:8:279:6:205:-14.143,0,-21.2331	.:.:.:.:.:.:.:.	0/1:9:2,7:2:72:7:252:-19.7776,0,-4.12745	0/1:36:21,15:21:756:15:536:-36.7275,0,-57.5301	0/0:109:108,1:108:3811:1:36:0,-30.0761,-340.453	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:62:28,34:28:995:34:1220:-88.6744,0,-71.2002	0/1:74:36,38:36:1275:38:1368:-98.5734,0,-92.7761	0/1:43:31,12:31:1094:12:424:-24.7913,0,-85.824	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.364	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.957	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.648	0/1:10:4,6:4:140:6:216:-16.266,0,-9.93428	0/1:56:28,28:28:977:28:1004:-72.3209,0,-71.3829	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.282	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.607	0/0:70:70,0:70:2511:0:0:0,-21.0721,-226.241	0/0:75:75,0:75:2664:0:0:0,-22.5772,-239.759	0/0:27:27,0:27:948:0:0:0,-8.12781,-85.6319	0/1:5:1,4:1:36:4:144:-11.0648,0,-2.09312	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:44:44,0:44:1544:0:0:0,-13.2453,-139.247	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/1:34:13,21:13:445:21:752:-55.7859,0,-30.1403	0/1:44:22,21:22:792:21:752:-53.414,0,-58.3885	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/0:35:35,0:35:1227:0:0:0,-10.536,-110.73	0/1:74:44,30:44:1580:30:1067:-71.6015,0,-120.215	0/1:14:4,10:4:144:10:352:-27.1821,0,-9.0992	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.729	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859
chr04	27056376	.	C	T	60184.7	PASS	AB=0.461488;ABP=22.5793;AC=147;AF=0.781915;AN=188;AO=2854;CIGAR=1X;DP=3681;DPB=3681;DPRA=0;EPP=6200.39;EPPR=1798.82;GTI=0;LEN=1;MEANALT=1;MQM=54.5834;MQMR=54.8501;NS=94;NUMALT=1;ODDS=2.98638;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101496;QR=28971;RO=827;RPL=2854;RPP=6200.39;RPPR=1798.82;RPR=0;RUN=1;SAF=2854;SAP=6200.39;SAR=0;SRF=827;SRP=1798.82;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:2,4:2:68:4:144:-11.5011,0,-4.65019	1/1:44:0,44:0:0:44:1564:-140.838,-13.2453,0	1/1:36:0,36:0:0:36:1290:-116.297,-10.8371,0	1/1:142:0,142:0:0:142:5046:-453.171,-42.7463,0	0/1:12:7,5:7:239:5:180:-12.9278,0,-18.2204	0/1:20:10,10:10:356:10:360:-26.7081,0,-26.346	0/1:58:38,20:38:1360:20:714:-46.7438,0,-105.121	0/1:67:32,35:32:1121:35:1244:-91.9131,0,-80.9059	1/1:21:0,21:0:0:21:752:-67.9045,-6.32163,0	1/1:18:0,18:0:0:18:644:-57.5327,-5.41854,0	0/1:35:19,16:19:659:16:574:-41.2365,0,-48.9143	1/1:26:0,26:0:0:26:928:-83.7729,-7.82678,0	1/1:16:0,16:0:0:16:564:-51.0683,-4.81648,0	1/1:44:0,44:0:0:44:1564:-140.065,-13.2453,0	1/1:31:0,31:0:0:31:1108:-99.9351,-9.33193,0	0/1:32:21,11:21:734:11:392:-25.9626,0,-56.7024	1/1:28:0,28:0:0:28:1003:-90.4209,-8.42884,0	1/1:38:0,38:0:0:38:1355:-122.045,-11.4391,0	0/1:25:15,10:15:506:10:345:-23.7946,0,-38.2493	0/1:97:54,43:54:1883:43:1520:-107.71,0,-140.118	0/1:33:16,17:16:549:17:595:-43.5383,0,-39.7627	1/1:45:0,45:0:0:45:1611:-145.08,-13.5464,0	0/1:15:5,10:5:180:10:360:-27.7212,0,-12.0196	0/1:22:13,9:13:464:9:316:-22.137,0,-35.4464	1/1:18:0,18:0:0:18:648:-58.4402,-5.41854,0	0/1:125:63,62:63:2204:62:2215:-161.074,0,-160.749	0/1:73:37,36:37:1302:36:1279:-93.1445,0,-95.1244	0/1:8:2,6:2:72:6:216:-17.368,0,-4.33522	1/1:162:0,162:0:0:162:5743:-515.28,-48.7669,0	0/1:33:16,17:16:563:17:606:-44.8774,0,-40.8625	0/1:32:19,13:19:680:13:440:-30.1813,0,-51.8369	0/1:4:2,2:2:64:2:68:-5.25047,0,-4.87294	0/1:7:3,4:3:93:4:144:-11.1968,0,-6.5646	1/1:5:0,5:0:0:5:176:-16.1086,-1.50515,0	1/1:13:0,13:0:0:13:468:-42.3722,-3.91339,0	1/1:8:0,8:0:0:8:288:-26.2562,-2.40824,0	1/1:101:0,101:0:0:101:3612:-324.66,-30.404,0	1/1:97:0,97:0:0:97:3423:-307.028,-29.1999,0	1/1:27:0,27:0:0:27:958:-86.4795,-8.12781,0	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	0/1:57:30,27:30:1037:27:964:-69.7607,0,-76.3356	0/1:30:14,16:14:474:16:548:-40.4622,0,-33.9275	0/1:32:19,13:19:667:13:468:-32.7287,0,-50.5985	0/1:27:20,7:20:699:7:248:-14.5157,0,-55.0475	1/1:21:0,21:0:0:21:743:-67.0749,-6.32163,0	1/1:36:0,36:0:0:36:1296:-116.677,-10.8371,0	1/1:35:0,35:0:0:35:1237:-111.284,-10.5361,0	0/1:90:42,48:42:1468:48:1713:-126.995,0,-104.768	0/1:43:10,33:10:356:33:1178:-92.8119,0,-19.3216	1/1:60:0,60:0:0:60:2136:-191.667,-18.0618,0	1/1:52:0,52:0:0:52:1836:-164.956,-15.6536,0	1/1:4:0,4:0:0:4:144:-13.2999,-1.20412,0	1/1:50:0,50:0:0:50:1783:-160.38,-15.0515,0	0/1:16:9,7:9:320:7:246:-17.5043,0,-24.2886	1/1:5:0,5:0:0:5:180:-16.5448,-1.50515,0	0/1:75:40,35:40:1386:35:1236:-88.6554,0,-102.25	0/1:37:19,18:19:671:18:648:-47.3502,0,-49.516	0/1:8:5,3:5:163:3:108:-7.65264,0,-12.5704	0/1:2:1,1:1:36:1:36:-2.99111,0,-2.99111	0/1:35:21,14:21:743:14:504:-35.1305,0,-56.5273	1/1:56:0,56:0:0:56:1976:-177.838,-16.8577,0	1/1:5:0,5:0:0:5:180:-16.535,-1.50515,0	0/1:89:49,40:49:1712:40:1428:-101.632,0,-126.938	0/1:40:23,17:23:824:17:608:-42.7494,0,-62.367	0/1:22:14,8:14:487:8:288:-19.6266,0,-37.4203	1/1:45:0,45:0:0:45:1607:-144.764,-13.5464,0	1/1:62:5,57:5:176:57:2034:-166.661,-2.49248,0	1/1:47:1,46:1:36:46:1644:-144.266,-10.5538,0	1/1:13:0,13:0:0:13:464:-42.0691,-3.91339,0	1/1:28:0,28:0:0:28:1008:-90.9937,-8.42884,0	1/1:37:0,37:0:0:37:1320:-118.698,-11.1381,0	0/1:6:4,2:4:144:2:72:-5.0235,0,-11.4937	0/1:34:18,16:18:640:16:576:-41.8259,0,-47.5226	1/1:21:0,21:0:0:21:756:-68.3078,-6.32163,0	1/1:34:0,34:0:0:34:1224:-109.758,-10.235,0	1/1:82:0,82:0:0:82:2917:-262.344,-24.6845,0	1/1:38:0,38:0:0:38:1353:-121.901,-11.4391,0	1/1:70:0,70:0:0:70:2512:-226.006,-21.0721,0	0/1:5:4,1:4:144:1:36:-2.09141,0,-11.8021	1/1:56:0,56:0:0:56:1970:-176.96,-16.8577,0	1/1:61:0,61:0:0:61:2155:-193.707,-18.3628,0	1/1:73:2,71:2:72:71:2539:-221.131,-15.1455,0	1/1:49:0,49:0:0:49:1728:-155.606,-14.7505,0	1/1:26:0,26:0:0:26:924:-83.3908,-7.82678,0	0/1:19:13,6:13:452:6:212:-13.6585,0,-35.2559	0/1:53:30,23:30:1052:23:824:-58.4536,0,-78.6194	1/1:19:0,19:0:0:19:676:-60.9702,-5.71957,0	1/1:29:0,29:0:0:29:1009:-90.8273,-8.72987,0	1/1:24:1,23:1:36:23:815:-70.0412,-3.62645,0	1/1:32:0,32:0:0:32:1118:-100.642,-9.63296,0	0/1:65:39,26:39:1375:26:932:-64.3105,0,-104.21	0/1:30:20,10:20:704:10:349:-22.461,0,-54.4926	1/1:30:0,30:0:0:30:1065:-95.8502,-9.0309,0	1/1:40:0,40:0:0:40:1396:-125.611,-12.0412,0
chr04	27074441	.	G	A	155464	PASS	AB=0.507823;ABP=5.01478;AC=147;AF=0.781915;AN=188;AO=7241;CIGAR=1X;DP=9112;DPB=9112;DPRA=0;EPP=15726.6;EPPR=4065.84;GTI=0;LEN=1;MEANALT=1;MQM=59.9896;MQMR=59.9952;NS=94;NUMALT=1;ODDS=2.31478;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258918;QR=66880;RO=1871;RPL=7241;RPP=15726.6;RPPR=4065.84;RPR=0;RUN=1;SAF=0;SAP=15726.6;SAR=7241;SRF=0;SRP=4065.84;SRR=1871;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:26,16:26:932:16:567:-38.7175,0,-71.5556	1/1:117:1,116:1:36:116:4168:-371.699,-31.6222,0	1/1:177:0,177:0:0:177:6317:-568.623,-53.2823,0	1/1:125:0,125:0:0:125:4484:-403.728,-37.6288,0	0/1:79:33,46:33:1184:46:1648:-124.827,0,-83.0869	0/1:64:41,23:41:1464:23:824:-55.2174,0,-112.79	0/1:142:56,86:56:2004:86:3052:-232.165,0,-137.887	0/1:104:49,55:49:1740:55:1969:-146.177,0,-125.577	1/1:83:0,83:0:0:83:2949:-265.454,-24.9855,0	1/1:81:0,81:0:0:81:2881:-259.526,-24.3834,0	0/1:49:25,24:25:887:24:864:-63.3321,0,-65.3976	1/1:72:0,72:0:0:72:2558:-230.47,-21.6742,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:60:0,60:0:0:60:2138:-192.687,-18.0618,0	1/1:66:1,65:1:36:65:2340:-207.261,-16.2697,0	0/1:40:26,14:26:936:14:500:-33.295,0,-72.5183	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:64:0,64:0:0:64:2287:-206.09,-19.2659,0	0/1:43:25,18:25:896:18:648:-45.7076,0,-68.0161	0/1:189:88,101:88:3136:101:3602:-267.491,0,-225.572	0/1:128:67,61:67:2404:61:2151:-155.321,0,-178.085	1/1:223:3,220:3:104:220:7869:-698.533,-57.4269,0	0/1:37:12,25:12:432:25:886:-68.9196,0,-28.0831	0/1:113:55,58:55:1968:58:2057:-151.384,0,-143.379	1/1:62:0,62:0:0:62:2208:-198.985,-18.6639,0	0/1:267:140,127:140:5004:127:4548:-329.111,0,-370.133	0/1:238:142,96:142:5080:96:3435:-237.718,0,-385.695	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3501	1/1:243:2,241:2:72:241:8599:-767.071,-66.3136,0	0/1:126:60,66:60:2152:66:2353:-174.098,0,-156.017	0/1:82:29,53:29:1044:53:1892:-145.874,0,-69.5903	0/1:9:3,6:3:108:6:215:-16.9899,0,-7.3659	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:178:1,177:1:36:177:6322:-565.472,-49.9851,0	1/1:223:1,222:1:36:222:7956:-712.464,-63.5314,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:151:69,82:69:2464:82:2936:-219.019,0,-176.559	0/1:52:24,28:24:847:28:1004:-75.0223,0,-60.8952	0/1:133:64,69:64:2283:69:2480:-183.416,0,-165.694	0/1:55:23,32:23:828:32:1148:-87.0732,0,-58.2875	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:215:3,212:3:104:212:7559:-670.648,-55.0186,0	0/1:158:69,89:69:2463:89:3192:-239.94,0,-174.361	0/1:109:62,47:62:2220:47:1688:-119.395,0,-167.252	1/1:139:0,139:0:0:139:4996:-449.785,-41.8432,0	1/1:197:0,197:0:0:197:7022:-632.045,-59.3029,0	1/1:6:0,6:0:0:6:205:-18.7836,-1.80618,0	1/1:190:0,190:0:0:190:6812:-613.15,-57.1957,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:171:75,96:75:2680:96:3444:-258.696,0,-189.969	0/1:53:21,32:21:748:32:1124:-85.5121,0,-51.6907	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	0/1:97:61,36:61:2180:36:1280:-86.3033,0,-167.266	1/1:80:0,80:0:0:80:2863:-257.907,-24.0824,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:158:79,79:79:2824:79:2832:-207.556,0,-206.837	0/1:179:76,103:76:2713:103:3688:-278.238,0,-190.528	0/1:66:32,34:32:1152:34:1206:-88.9771,0,-84.1222	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:100:0,100:0:0:100:3565:-321.057,-30.103,0	1/1:86:1,85:1:36:85:3029:-269.241,-22.2903,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:98:0,98:0:0:98:3501:-315.299,-29.5009,0	1/1:88:1,87:1:36:87:3116:-277.068,-22.8924,0	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:193:101,92:101:3616:92:3275:-236.871,0,-267.547	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:94:0,94:0:0:94:3361:-302.7,-28.2968,0	1/1:288:0,288:0:0:288:10338:-930.338,-86.6966,0	1/1:159:0,159:0:0:159:5662:-509.699,-47.8638,0	1/1:123:0,123:0:0:123:4412:-397.251,-37.0267,0	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	1/1:196:0,196:0:0:196:7035:-633.209,-59.0019,0	1/1:174:0,174:0:0:174:6214:-559.354,-52.3792,0	1/1:262:0,262:0:0:262:9337:-840.296,-78.8699,0	1/1:85:0,85:0:0:85:3036:-273.466,-25.5876,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:85:49,36:49:1748:36:1292:-90.9962,0,-132.017	0/1:118:49,69:49:1756:69:2468:-186.852,0,-122.802	1/1:30:0,30:0:0:30:1072:-96.7748,-9.0309,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:73:1,72:1:36:72:2566:-227.59,-18.3769,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:79:33,46:33:1167:46:1656:-125.547,0,-81.555	0/1:68:41,27:41:1468:27:964:-66.6068,0,-111.946	1/1:134:0,134:0:0:134:4804:-432.515,-40.338,0	1/1:75:0,75:0:0:75:2691:-242.434,-22.5773,0
chr04	27118350	.	G	T	225493	PASS	AB=0.590678;ABP=1143.09;AC=96;AF=0.510638;AN=188;AO=9435;CIGAR=1X;DP=15969;DPB=15969;DPRA=0;EPP=20473.5;EPPR=14180.6;GTI=8;LEN=1;MEANALT=1.01064;MQM=58.168;MQMR=59.8247;NS=94;NUMALT=1;ODDS=2.32732;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=337514;QR=232469;RO=6533;RPL=4828;RPP=14.2511;RPPR=7.25453;RPR=4607;RUN=1;SAF=4826;SAP=13.8479;SAR=4609;SRF=3209;SRP=7.40609;SRR=3324;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:21,32:21:724:32:1133:-85.8212,0,-49.522	0/1:276:129,147:129:4567:147:5260:-389.713,0,-327.92	0/1:283:113,170:113:4009:170:6092:-462.433,0,-275.809	0/1:326:129,197:129:4589:197:7065:-537.551,0,-314.667	0/1:91:24,67:24:841:67:2397:-188.505,0,-48.6103	0/1:113:29,84:29:1032:84:2994:-234.534,0,-59.1771	0/1:135:51,84:51:1823:84:3020:-231.378,0,-123.711	0/1:232:60,172:60:2144:172:6153:-483.476,0,-123.387	0/1:164:68,96:68:2436:96:3435:-259.617,0,-170.11	0/1:210:90,120:90:3201:120:4287:-321.917,0,-225.022	0/1:144:49,95:49:1744:95:3391:-261.749,0,-113.896	0/1:262:113,149:113:4010:149:5317:-399.309,0,-282.212	0/1:273:122,151:122:4345:151:5410:-404.216,0,-309.012	0/1:198:84,114:84:2980:114:4084:-307.426,0,-208.808	0/1:251:107,144:107:3796:144:5167:-389.209,0,-266.28	0/1:161:54,107:54:1927:107:3821:-295.12,0,-125.239	0/1:285:145,140:145:5154:140:5011:-364.529,0,-377.575	0/1:246:130,116:130:4635:116:4139:-297.313,0,-343.257	0/1:121:46,75:46:1621:75:2696:-205.255,0,-109.74	0/1:174:61,113:61:2162:113:4055:-312.502,0,-142.458	0/1:176:44,132:44:1557:132:4732:-372.8,0,-87.4384	0/1:69:31,38:31:1097:38:1355:-101.474,0,-78.2623	0/1:66:22,44:22:788:44:1580:-122.605,0,-51.3767	0/1:113:27,86:27:964:86:3079:-242.809,0,-53.0604	0/1:128:66,62:66:2334:62:2232:-162.505,0,-171.779	0/1:294:88,206:88:3143:206:7388:-576.175,0,-194.59	0/1:271:75,196:75:2666:196:7006:-548.61,0,-158.606	0/1:98:29,69:29:1018:69:2455:-190.645,0,-62.4294	0/1:421:178,243:178:6355:243:8727:-658.458,0,-445.309	0/1:94:21,73:21:747:73:2601:-205.521,0,-39.2567	0/1:129:44,85:44:1553:85:3035:-233.391,0,-101.227	0/1:5:1,4:1:36:4:144:-11.8069,0,-2.09312	0/1:7:4,3:4:144:3:108:-7.94595,0,-11.2064	0/1:5:1,4:1:36:4:144:-11.7509,0,-2.09312	0/1:4:2,2:2:72:2:72:-5.62908,0,-5.6326	0/1:11:2,9:2:72:9:324:-26.1747,0,-3.5168	0/1:550:289,261:289:10306:261:9376:-677.916,0,-761.847	0/1:154:65,89:65:2301:89:3185:-240.173,0,-160.97	0/1:218:109,109:109:3878:109:3893:-284.467,0,-283.565	1/1:1:0,1:0:0:1:36:-3.59656,-0.30103,0	0/1:219:67,152:67:2395:152:5414:-421.262,0,-149.881	0/1:95:41,54:41:1453:54:1944:-146.289,0,-102.466	0/1:190:46,144:46:1652:144:5132:-404.476,0,-91.7271	0/1:198:70,128:70:2499:128:4588:-353.416,0,-165.555	0/1:194:95,99:95:3376:99:3533:-259.553,0,-245.655	0/1:108:53,55:53:1896:55:1972:-145.147,0,-138.407	0/1:216:89,127:89:3164:127:4555:-344.609,0,-219.952	0/1:141:28,113:28:1004:113:4033:-320.569,0,-48.2306	0/1:94:29,65:29:1018:65:2336:-182.177,0,-63.6336	0/1:223:97,126:97:3452:126:4503:-338.028,0,-243.762	0/1:240:133,107:133:4760:107:3836:-273,0,-356.311	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:247:98,149:98:3489:149:5293:-401.374,0,-239.851	0/1:42:12,30:12:432:30:1072:-84.1302,0,-26.5779	0/1:15:9,6:9:320:6:216:-15.247,0,-24.6269	0/1:186:54,132:54:1928:132:4717:-368.365,0,-117.805	0/1:62:13,49:13:468:49:1756:-139.6,0,-23.7958	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:11:5,6:5:180:6:216:-16.4758,0,-13.2407	0/1:93:32,61:32:1127:61:2175:-167.907,0,-73.6967	0/1:282:124,158:124:4412:158:5664:-424.054,0,-312.362	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:160:50,110:50:1779:110:3929:-305.573,0,-112.227	0/1:186:56,130:56:1985:130:4640:-361.426,0,-122.931	0/1:127:34,93:34:1224:93:3322:-260.304,0,-72.2296	0/1:144:75,69:75:2688:69:2480:-179.843,0,-198.816	0/1:239:106,133:106:3739:133:4745:-354.994,0,-264.179	0/1:175:79,96:79:2828:96:3448:-257.695,0,-201.257	0/1:84:42,42:42:1503:42:1494:-107.808,0,-110.277	0/1:234:102,132:102:3635:132:4738:-354.979,0,-256.907	0/1:309:158,151:158:5601:151:5396:-392.468,0,-411.189	0/1:18:4,14:4:144:14:504:-40.2705,0,-7.89508	0/1:102:23,79:23:804:79:2804:-221.784,0,-41.9539	0/1:97:47,50:47:1671:50:1779:-131.057,0,-121.475	0/1:226:90,136:90:3201:136:4892:-372.027,0,-219.988	0/1:300:129,171:129:4600:171:6061:-454.823,0,-323.826	0/1:231:90,141:90:3212:141:5018:-381.532,0,-219.446	0/1:286:151,135:151:5389:135:4840:-349.071,0,-398.775	0/1:6:1,5:1:36:5:180:-14.745,0,-1.79209	0/1:283:120,163:120:4283:163:5856:-441.377,0,-300.082	0/1:236:90,146:90:3215:146:5190:-395.44,0,-218.503	0/1:326:174,152:174:6200:152:5451:-391.72,0,-459.962	0/1:319:167,152:167:5892:152:5446:-393.955,0,-434.354	0/1:209:100,109:100:3542:109:3899:-288.085,0,-256.042	0/1:228:76,152:76:2709:152:5443:-420.775,0,-175.418	0/1:282:87,194:87:3086:194:6880:-533.866,0,-193.012	0/1:131:66,65:66:2368:65:2316:-169.187,0,-173.94	0/1:213:105,108:105:3736:108:3871:-283.791,0,-271.731	0/1:212:114,98:114:4042:98:3511:-252.065,0,-300.026	0/1:147:73,74:73:2615:74:2664:-195.368,0,-191.345	0/1:149:44,105:44:1571:105:3760:-293.64,0,-96.7735	0/1:152:36,116:36:1284:116:4132:-326.163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chr04	27118355	.	C	A	33563.3	PASS	AB=0.338849;ABP=1175.29;AC=40;AF=0.212766;AN=188;AO=1778;CIGAR=1X;DP=15897;DPB=15897;DPRA=0.819349;EPP=3855.21;EPPR=30603.4;GTI=5;LEN=1;MEANALT=1.05556;MQM=59.3296;MQMR=58.796;NS=94;NUMALT=1;ODDS=14.0706;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63630;QR=502420;RO=14116;RPL=940;RPP=15.7167;RPPR=3.85268;RPR=838;RUN=1;SAF=939;SAP=15.2233;SAR=839;SRF=7089;SRP=3.60162;SRR=7027;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:40,14:40:1424:14:500:-29.0732,0,-111.714	0/0:274:273,1:273:9720:1:36:0,-78.8857,-870.374	0/0:286:285,1:285:10156:1:36:0,-82.4963,-909.679	0/0:322:322,0:322:11452:0:0:0,-96.9317,-1030.35	0/1:88:55,33:55:1965:33:1188:-80.7167,0,-150.564	0/1:109:76,33:76:2653:33:1184:-73.4095,0,-205.684	0/1:140:106,34:106:3753:34:1220:-67.4027,0,-295.81	0/1:229:154,74:154:5473:74:2634:-168.254,0,-423.211	0/0:166:165,1:165:5875:1:36:0,-46.3727,-524.851	0/0:209:209,0:209:7465:0:0:0,-62.9153,-670.594	0/1:144:90,54:90:3182:54:1918:-129.508,0,-242.803	0/0:261:261,0:261:9274:0:0:0,-78.5688,-834.103	0/0:275:275,0:275:9818:0:0:0,-82.7832,-882.893	0/0:202:202,0:202:7204:0:0:0,-60.8081,-647.322	0/0:251:250,1:250:8916:1:36:0,-71.9607,-798.416	0/1:157:102,55:102:3656:55:1968:-130.098,0,-280.477	0/0:281:281,0:281:10011:0:0:0,-84.5894,-899.532	0/0:247:247,0:247:8809:0:0:0,-74.3544,-791.528	0/1:122:85,37:85:3033:37:1316:-81.9851,0,-235.287	0/1:178:128,50:128:4545:50:1800:-108.662,0,-355.403	0/1:180:121,59:121:4288:59:2093:-134.413,0,-331.825	0/0:68:67,1:67:2392:1:36:0,-16.8718,-211.933	0/1:66:41,25:41:1455:25:900:-61.453,0,-111.366	0/1:111:67,44:67:2368:44:1571:-108.165,0,-179.487	0/0:127:127,0:127:4524:0:0:0,-38.2308,-407.202	0/1:289:184,105:184:6530:105:3737:-249.451,0,-500.701	0/1:270:178,91:178:6341:91:3239:-210.025,0,-489.232	0/1:97:67,30:67:2374:30:1076:-67.9221,0,-183.674	0/0:420:419,1:419:14943:1:36:0,-122.866,-1340.86	0/1:93:60,33:60:2128:33:1184:-78.4723,0,-163.758	0/1:127:91,36:91:3234:36:1296:-78.4748,0,-253.034	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19606	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6617	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4948	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3102	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1379	0/0:545:545,0:545:19322:0:0:0,-164.061,-1738.11	0/0:151:151,0:151:5392:0:0:0,-45.4555,-485.15	0/0:221:221,0:221:7908:0:0:0,-66.5276,-711.176	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/1:219:145,74:145:5101:74:2644:-172.279,0,-392.862	0/1:94:73,21:73:2590:21:752:-39.7094,0,-204.705	0/1:189:119,70:119:4207:70:2508:-168.947,0,-321.754	0/1:200:139,61:139:4939:61:2192:-137.315,0,-384.402	0/0:189:188,1:188:6643:1:36:0,-53.2964,-594.128	0/0:107:107,0:107:3810:0:0:0,-32.2102,-343.001	0/0:214:214,0:214:7631:0:0:0,-64.4204,-686.229	0/1:137:81,56:81:2912:56:2008:-139.713,0,-220.978	0/1:94:52,42:52:1868:42:1512:-108.078,0,-140.033	0/0:223:222,1:222:7905:1:36:0,-63.5812,-707.649	0/0:240:240,0:240:8559:0:0:0,-72.2472,-770.123	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:244:243,1:243:8665:1:36:0,-69.853,-774.728	0/1:40:28,12:28:999:12:428:-26.8163,0,-78.1657	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.1853	0/1:184:134,50:134:4726:50:1796:-106.485,0,-369.861	0/1:62:48,14:48:1720:14:500:-26.6714,0,-136.363	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:10,1:10:360:1:36:-0.283238,0,-29.433	0/1:93:67,26:67:2372:26:934:-56.355,0,-185.612	0/0:277:276,1:276:9893:1:36:0,-79.787,-885.774	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:157:100,57:100:3576:57:2052:-137.672,0,-274.736	0/1:182:110,72:110:3947:72:2584:-177.914,0,-300.564	0/1:126:87,39:87:3112:39:1400:-87.9492,0,-242.224	0/0:150:150,0:150:5323:0:0:0,-45.1545,-478.91	0/0:242:240,2:240:8551:2:68:0,-66.3942,-762.442	0/0:170:169,1:169:6011:1:36:0,-47.6266,-537.435	0/0:83:83,0:83:2948:0:0:0,-24.9855,-263.85	0/0:233:232,1:232:8272:1:36:0,-66.5417,-739.694	0/0:306:306,0:306:10870:0:0:0,-92.1152,-977.928	0/1:19:16,3:16:557:3:108:-4.3556,0,-44.7163	0/1:99:66,33:66:2305:33:1179:-76.4815,0,-177.805	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.515	0/0:219:219,0:219:7732:0:0:0,-65.9256,-695.382	0/0:295:295,0:295:10470:0:0:0,-88.8038,-941.685	0/0:237:237,0:237:8453:0:0:0,-71.3441,-759.717	0/0:288:288,0:288:10275:0:0:0,-86.6966,-923.806	0/1:6:2,4:2:72:4:144:-11.5065,0,-5.03054	0/0:278:278,0:278:9958:0:0:0,-83.6863,-895.376	0/0:233:233,0:233:8274:0:0:0,-70.14,-743.994	0/0:325:325,0:325:11638:0:0:0,-97.8347,-1045.42	0/0:319:319,0:319:11294:0:0:0,-96.0286,-1016.08	0/0:207:207,0:207:7365:0:0:0,-62.3132,-662.803	0/1:227:141,85:141:5008:85:3052:-206.508,0,-382.213	0/1:285:185,100:185:6568:100:3557:-234.336,0,-505.208	0/0:131:131,0:131:4663:0:0:0,-39.4349,-419.744	0/0:212:212,0:212:7522:0:0:0,-63.8184,-675.724	0/0:208:208,0:208:7390:0:0:0,-62.6142,-664.71	0/0:145:145,0:145:5189:0:0:0,-43.6493,-466.764	0/1:153:98,55:98:3491:55:1976:-132.033,0,-267.347	0/1:154:78,76:78:2766:76:2728:-199.318,0,-202.2	0/0:109:106,3:106:3766:3:108:0,-22.7371,-329.015	0/0:373:373,0:373:13352:0:0:0,-112.284,-1201.07
chr04	27118361	.	TCCT	TCGT,TCG	374222	PASS	AB=0.624813,0.37125;ABP=1996.7,2124.44;AC=97,91;AF=0.515957,0.484043;AN=188;AO=9217,5470;CIGAR=2M1X1M,1M1D1M1X;DP=14745;DPB=13376;DPRA=0,44.1578;EPP=4.19793,563.284;EPPR=0;GTI=9;LEN=1,3;MEANALT=2.56383,2.61538;MQM=58.174,59.7927;MQMR=0;NS=94;NUMALT=2;ODDS=1.40786;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=326255,191225;QR=0;RO=0;RPL=9213,5455;RPP=19982.7,11751;RPPR=0;RPR=4,15;RUN=1,1;SAF=4640,2126;SAP=3.94537,591.937;SAR=4577,3344;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,31,8:0:0:31,8:1107,288:-113.378,-23.5703,-14.2384,-89.8768,0,-87.4686	1/2:234:0,142,89:0:0:142,89:5021,3149:-664.588,-256.442,-213.695,-408.14,0,-381.349	1/2:227:0,171,54:0:0:171,54:6085,1903:-650.225,-155.021,-103.545,-495.289,0,-479.034	1/2:322:0,193,127:0:0:193,127:6814,4398:-912.034,-357.415,-299.317,-554.664,0,-516.433	1/2:88:0,65,22:0:0:65,22:2318,779:-252.326,-63.4472,-43.8802,-188.874,0,-182.251	1/2:92:0,79,13:0:0:79,13:2797,468:-265.787,-38.5463,-14.7649,-227.6,0,-223.686	1/2:134:0,81,53:0:0:81,53:2811,1852:-379.418,-151.003,-126.62,-228.763,0,-212.809	1/2:211:0,166,45:0:0:166,45:5888,1575:-607.654,-128.489,-78.5179,-479.516,0,-465.97	1/2:121:0,97,24:0:0:97,24:3449,849:-350.154,-69.4879,-40.288,-281.02,0,-273.795	1/2:208:0,118,90:0:0:118,90:4212,3132:-597.252,-254.043,-218.521,-343.56,0,-316.468	1/2:140:0,88,49:0:0:88,49:3100,1713:-391.612,-139.405,-112.914,-252.261,0,-237.511	1/2:198:0,147,51:0:0:147,51:5149,1821:-567.277,-148.811,-104.56,-418.821,0,-403.468	1/2:218:0,150,67:0:0:150,67:5293,2380:-624.282,-193.907,-148.752,-430.369,0,-410.2	1/2:192:0,113,78:0:0:113,78:3993,2725:-545.995,-221.425,-187.408,-324.569,0,-301.088	1/2:243:0,143,100:0:0:143,100:5073,3511:-699.019,-286.099,-243.052,-413.272,0,-383.169	1/2:156:0,105,50:0:0:105,50:3692,1757:-443.076,-142.997,-111.389,-300.071,0,-285.019	1/2:211:0,136,75:0:0:136,75:4817,2650:-607.213,-215.601,-174.661,-391.965,0,-369.388	1/2:182:0,114,67:0:0:114,67:4051,2355:-520.358,-191.673,-157.355,-328.678,0,-308.509	1/2:111:0,78,33:0:0:78,33:2777,1162:-320.735,-94.9359,-71.4555,-226.152,0,-216.218	1/2:173:0,112,61:0:0:112,61:3963,2132:-496.437,-173.782,-140.067,-323.006,0,-304.643	1/2:174:0,133,41:0:0:133,41:4698,1439:-499.704,-117.461,-77.4243,-382.594,0,-370.252	1/2:68:0,38,30:0:0:38,30:1342,974:-188.221,-78.9231,-67.4839,-109.635,0,-100.604	1/2:65:0,42,22:0:0:42,22:1478,752:-181.422,-61.1069,-48.4637,-120.396,0,-113.773	1/2:112:0,86,26:0:0:86,26:3037,921:-322.105,-75.3795,-49.4909,-247.08,0,-239.253	1/2:127:0,62,65:0:0:62,65:2212,2261:-364.363,-184.138,-165.474,-180.576,0,-161.009	1/2:286:0,196,87:0:0:196,87:6988,3035:-816.352,-246.901,-187.899,-569.512,0,-543.323	1/2:264:0,195,68:0:0:195,68:6922,2390:-758.162,-194.528,-135.827,-563.628,0,-543.158	1/2:91:0,66,25:0:0:66,25:2288,849:-254.774,-69.1939,-49.326,-185.922,0,-178.396	1/2:412:0,234,176:0:0:234,176:8342,6133:-1178.59,-498.805,-428.364,-679.845,0,-626.864	1/2:93:0,72,21:0:0:72,21:2530,752:-267.244,-61.684,-40.0099,-205.916,0,-199.594	1/2:127:0,84,43:0:0:84,43:2949,1462:-358.39,-118.921,-93.6343,-239.812,0,-226.868	1/2:5:0,4,1:0:0:4,1:144,36:-15.0453,-3.29724,-2.09312,-12.1079,0,-11.8069	1/2:7:0,3,4:0:0:3,4:108,144:-20.9002,-12.1095,-11.2064,-9.15007,0,-7.94595	1/2:5:0,4,1:0:0:4,1:144,34:-14.8062,-3.09788,-1.89376,-12.0519,0,-11.7509	1/2:4:0,2,2:0:0:2,2:72,72:-12.1061,-6.23466,-5.6326,-6.23114,0,-5.62908	1/2:11:0,9,2:0:0:9,2:315,72:-31.8266,-6.22607,-3.5168,-25.9581,0,-25.356	1/2:539:0,255,280:0:0:255,280:8988,9774:-1526.59,-795.055,-718.293,-731.613,0,-647.325	1/2:150:0,89,61:0:0:89,61:3162,2140:-431.849,-174.481,-147.689,-257.721,0,-239.358	1/2:165:0,107,58:0:0:107,58:3779,2042:-473.966,-166.581,-134.371,-307.737,0,-290.278	1/1:1:0,1,0:0:0:1,0:36,0:-3.59656,-0.30103,0,-3.59656,-0.30103,-3.59656	1/2:215:0,149,66:0:0:149,66:5287,2291:-617.072,-186.581,-141.728,-430.84,0,-410.972	1/2:92:0,54,37:0:0:54,37:1926,1314:-263.718,-107.062,-90.8066,-156.651,0,-145.513	1/2:182:0,137,43:0:0:137,43:4818,1508:-514.599,-122.717,-81.4761,-391.883,0,-378.939	1/2:193:0,127,65:0:0:127,65:4420,2255:-542.599,-183.285,-145.054,-359.302,0,-339.735	1/2:188:0,97,91:0:0:97,91:3424,3108:-531.156,-252.556,-223.356,-278.947,0,-251.553	1/2:104:0,52,51:0:0:52,51:1841,1758:-292.715,-142.789,-127.136,-149.919,0,-134.566	1/2:171:0,123,47:0:0:123,47:4380,1660:-491.837,-135.256,-98.229,-356.657,0,-342.509	1/2:138:0,109,28:0:0:109,28:3904,985:-398.541,-80.2807,-47.4684,-318.36,0,-309.931	1/2:88:0,64,24:0:0:64,24:2262,849:-253.655,-69.5042,-50.2383,-184.504,0,-177.28	1/2:225:0,127,97:0:0:127,97:4483,3398:-641.21,-276.476,-238.245,-364.726,0,-335.526	1/2:238:0,104,134:0:0:104,134:3675,4693:-681.378,-382.196,-350.888,-299.535,0,-259.197	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:217:0,148,69:0:0:148,69:5241,2467:-627.447,-201.498,-156.946,-426.304,0,-405.533	1/2:42:0,30,12:0:0:30,12:1068,417:-121.281,-34.2487,-25.2178,-87.3822,0,-83.7698	1/2:12:0,6,6:0:0:6,6:216,203:-34.4022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chr04	27118373	.	C	G	31738.4	PASS	AB=0.349448;ABP=947.809;AC=40;AF=0.212766;AN=188;AO=1692;CIGAR=1X;DP=13951;DPB=13951;DPRA=0.793802;EPP=3.42611;EPPR=452.277;GTI=5;LEN=1;MEANALT=1.07692;MQM=59.3056;MQMR=58.6662;NS=94;NUMALT=1;ODDS=9.46677;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59295;QR=427765;RO=12250;RPL=1692;RPP=3677.14;RPPR=26603.5;RPR=0;RUN=1;SAF=855;SAP=3.42611;SAR=837;SRF=5329;SRP=452.277;SRR=6921;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:27,14:27:956:14:492:-32.2657,0,-73.5178	0/0:222:222,0:222:7920:0:0:0,-66.8287,-712.007	0/0:194:192,1:192:6835:1:36:0,-54.8545,-610.954	0/0:306:306,0:306:10618:0:0:0,-92.1152,-954.961	0/1:85:53,32:53:1867:32:1123:-75.7683,0,-142.652	0/1:89:57,32:57:2032:32:1127:-74.5563,0,-156.058	0/1:119:91,28:91:3145:28:960:-50.8826,0,-247.386	0/1:208:132,76:132:4650:76:2668:-177.695,0,-355.583	0/0:105:104,1:104:3661:1:36:0,-28.0099,-325.8	0/0:203:203,0:203:7070:0:0:0,-61.1091,-635.318	0/1:138:86,52:86:2899:52:1826:-123.037,0,-219.322	0/0:174:174,0:174:6155:0:0:0,-52.3792,-553.636	0/0:196:196,0:196:6979:0:0:0,-59.0019,-627.52	0/0:178:178,0:178:6185:0:0:0,-53.5833,-555.915	0/0:232:232,0:232:7974:0:0:0,-69.839,-717.302	0/1:143:92,51:92:3225:51:1792:-118.48,0,-245.973	0/0:199:199,0:199:7051:0:0:0,-59.905,-633.275	0/0:172:172,0:172:6135:0:0:0,-51.7772,-551.07	0/1:104:69,35:69:2438:35:1226:-79.2899,0,-187.874	0/1:163:115,48:115:4017:48:1711:-105.171,0,-312.58	0/1:160:108,52:108:3692:52:1832:-116.893,0,-284.227	0/0:67:65,2:65:2221:2:72:0,-13.3323,-193.304	0/1:60:37,23:37:1316:23:820:-56.0607,0,-100.669	0/1:102:59,43:59:2085:43:1482:-102.907,0,-156.73	0/0:122:122,0:122:4273:0:0:0,-36.7257,-384.632	0/1:276:180,96:180:6172:96:3373:-220.611,0,-472.456	0/1:251:159,92:159:5571:92:3241:-215.686,0,-425.745	0/1:84:56,28:56:1911:28:985:-63.6745,0,-145.932	0/0:396:396,0:396:13694:0:0:0,-119.208,-1232.08	0/1:89:55,34:55:1912:34:1186:-80.0753,0,-145.531	0/1:126:92,34:92:3215:34:1203:-70.4069,0,-251.609	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.56842	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6617	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1385	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3102	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5161	0/0:515:514,0:514:17786:0:0:0,-154.729,-1599.82	0/0:147:146,1:146:5155:1:25:0,-41.7517,-461.259	0/0:155:155,0:155:5483:0:0:0,-46.6596,-493.133	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/1:205:135,70:135:4572:70:2442:-158.322,0,-349.495	0/1:87:66,21:66:2304:21:740:-40.7338,0,-181.113	0/1:174:107,67:107:3704:67:2354:-159.498,0,-280.992	0/1:179:122,57:122:4150:57:1992:-125.644,0,-319.74	0/0:179:179,0:179:6153:0:0:0,-53.8844,-553.66	0/0:98:98,0:98:3379:0:0:0,-29.5009,-304.248	0/0:154:154,0:154:5491:0:0:0,-46.3586,-493.732	0/1:136:81,55:81:2806:55:1901:-130.39,0,-211.741	0/1:86:46,40:46:1592:40:1423:-102.478,0,-117.65	0/0:212:209,0:209:7237:0:0:0,-62.9153,-650.854	0/0:226:226,0:226:7899:0:0:0,-68.0328,-710.802	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:209:207,1:207:7365:1:36:0,-59.3757,-657.04	0/1:39:28,11:28:971:11:392:-23.8765,0,-75.9433	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9549	0/1:168:121,47:121:4179:47:1657:-98.8395,0,-325.487	0/1:60:46,14:46:1602:14:476:-25.0978,0,-126.355	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:10,1:10:360:1:36:-0.283238,0,-29.433	0/1:90:64,26:64:2210:26:920:-56.0035,0,-171.942	0/0:262:260,1:260:8966:1:36:0,-75.3032,-802.932	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/1:152:98,54:98:3413:54:1879:-123.614,0,-261.596	0/1:179:108,71:108:3775:71:2477:-169.059,0,-285.996	0/1:120:80,40:80:2833:40:1419:-91.4723,0,-218.83	0/0:136:136,0:136:4658:0:0:0,-40.9401,-419.084	0/0:218:217,1:217:7501:1:32:0,-62.428,-671.659	0/0:163:162,1:162:5641:1:36:0,-45.5194,-504.138	0/0:78:78,0:78:2742:0:0:0,-23.4803,-245.319	0/0:182:181,1:181:6427:1:36:0,-51.1892,-573.737	0/0:287:287,0:287:9996:0:0:0,-86.3956,-899.332	0/1:17:15,2:15:519:2:72:-1.71921,0,-41.9095	0/1:91:57,34:57:2016:34:1212:-81.6711,0,-154.206	0/0:69:69,0:69:2412:0:0:0,-20.7711,-217.201	0/0:195:195,0:195:6853:0:0:0,-58.7008,-616.36	0/0:284:284,0:284:9981:0:0:0,-85.4925,-897.857	0/0:181:181,0:181:6437:0:0:0,-54.4864,-578.417	0/0:200:199,1:199:7098:1:28:0,-57.4698,-635.661	0/1:5:1,4:1:36:4:140:-11.4385,0,-2.09312	0/0:268:267,1:267:9365:1:25:0,-78.2274,-839.792	0/0:174:174,0:174:6126:0:0:0,-52.3792,-550.78	0/0:305:305,0:305:10666:0:0:0,-91.8141,-957.698	0/0:296:296,0:296:10284:0:0:0,-89.1049,-925.174	0/0:184:184,0:184:6295:0:0:0,-55.3895,-566.578	0/1:205:128,77:128:4343:77:2660:-177.935,0,-329.094	0/1:264:173,90:173:5972:90:3137:-203,0,-457.975	0/0:88:88,0:88:3119:0:0:0,-26.4906,-280.859	0/0:153:152,0:152:5412:0:0:0,-45.7566,-486.298	0/0:131:131,0:131:4688:0:0:0,-39.4349,-421.636	0/0:141:141,0:141:4967:0:0:0,-42.4452,-446.805	0/1:140:88,52:88:3088:52:1830:-122.811,0,-235.907	0/1:141:70,71:70:2432:71:2475:-180.476,0,-176.623	0/0:101:98,3:98:3339:3:108:0,-20.3289,-290.637	0/0:356:356,0:356:12386:0:0:0,-107.167,-1114.21
chr04	27118374	.	G	A	115406	PASS	AB=0.411304;ABP=901.303;AC=91;AF=0.484043;AN=188;AO=5407;CIGAR=1X;DP=13156;DPB=13156;DPRA=43.3385;EPP=553.706;EPPR=527.207;GTI=6;LEN=1;MEANALT=1.08791;MQM=59.7882;MQMR=57.861;NS=94;NUMALT=1;ODDS=3.78486;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193126;QR=273057;RO=7741;RPL=5407;RPP=11744.2;RPPR=16812.4;RPR=0;RUN=1;SAF=2118;SAP=553.706;SAR=3289;SRF=3187;SRP=527.207;SRR=4554;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:29,7:29:1027:7:252:-12.1919,0,-81.3985	0/1:180:94,86:94:3355:86:3080:-222.879,0,-247.164	0/1:130:80,50:80:2859:50:1792:-122.429,0,-217.618	0/1:303:179,124:179:6320:124:4415:-305.94,0,-477.48	0/1:88:66,22:66:2329:22:792:-45.1127,0,-183.293	0/1:63:50,13:50:1780:13:468:-23.4948,0,-141.209	0/1:120:69,51:69:2413:51:1814:-127.416,0,-181.292	0/1:177:131,46:131:4648:46:1643:-94.8725,0,-364.792	0/1:62:38,24:38:1341:24:854:-58.5005,0,-101.99	0/1:206:116,90:116:4088:90:3190:-224.538,0,-305.919	0/1:138:89,49:89:3136:49:1760:-117.142,0,-240.667	0/1:113:64,49:64:2266:49:1745:-123.313,0,-169.75	0/1:133:65,68:65:2324:68:2442:-179.986,0,-168.763	0/1:185:107,78:107:3743:78:2796:-195.954,0,-280.593	0/1:237:138,99:138:4846:99:3524:-246.024,0,-364.545	0/1:145:97,48:97:3380:48:1711:-110.624,0,-260.019	0/1:140:66,74:66:2350:74:2660:-196.866,0,-168.84	0/1:131:65,66:65:2302:66:2359:-173.124,0,-166.756	0/1:87:56,30:56:1987:30:1072:-70.6458,0,-152.803	0/1:166:107,59:107:3777:59:2112:-140.378,0,-290.056	0/1:158:119,39:119:4213:39:1391:-77.9232,0,-331.142	0/1:67:36,31:36:1244:31:1100:-79.1394,0,-92.0857	0/1:62:40,22:40:1411:22:792:-52.9414,0,-108.612	0/1:106:80,26:80:2843:26:932:-52.2897,0,-223.609	0/1:122:60,62:60:2132:62:2220:-163.336,0,-155.319	0/1:281:194,87:194:6797:87:3120:-196.434,0,-527.031	0/1:253:187,66:187:6620:66:2347:-135.328,0,-518.811	0/1:89:63,26:63:2218:26:912:-55.6019,0,-172.048	0/1:402:229,172:229:8003:172:6130:-430.729,0,-599.016	0/1:91:71,20:71:2524:20:712:-37.0121,0,-199.659	0/1:122:81,41:81:2838:41:1452:-94.2503,0,-218.634	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8069	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.94595	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.3926	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69148	0/1:5:3,2:3:104:2:57:-3.90789,0,-8.18236	0/1:529:249,280:249:8731:280:10011:-741.683,0,-626.319	0/1:144:85,59:85:3020:59:2092:-145.178,0,-228.446	0/1:122:65,57:65:2293:57:2027:-145.968,0,-169.447	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/1:207:142,65:142:5026:65:2316:-146.388,0,-389.727	0/1:91:54,37:54:1920:37:1324:-92.0678,0,-145.337	0/1:174:130,44:130:4607:44:1569:-89.1167,0,-362.074	0/1:181:116,65:116:4064:65:2324:-154.928,0,-311.413	0/1:183:93,90:93:3277:90:3209:-233.941,0,-239.839	0/1:105:51,54:51:1786:54:1932:-142.548,0,-129.316	0/1:108:64,44:64:2288:44:1576:-109.619,0,-173.073	0/1:142:114,28:114:4021:28:999:-47.4782,0,-319.194	0/1:85:63,22:63:2229:22:792:-46.0181,0,-175.222	0/1:210:116,94:116:4078:94:3357:-239.13,0,-303.677	0/1:233:100,133:100:3473:133:4755:-357.968,0,-242.535	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:158:90,68:90:3198:68:2448:-172.996,0,-239.013	0/1:39:28,11:28:988:11:396:-24.2426,0,-77.4728	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.275	0/1:164:115,49:115:4056:49:1756:-108.955,0,-315.608	0/1:61:47,14:47:1637:14:504:-27.2901,0,-129.238	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4758	0/1:87:56,31:56:2000:31:1112:-74.1568,0,-153.972	0/1:269:147,122:147:5145:122:4362:-311.776,0,-381.289	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:152:102,50:102:3581:50:1796:-116.165,0,-276.682	0/1:184:128,56:128:4559:56:2004:-125.241,0,-354.599	0/1:122:92,30:92:3246:30:1080:-60.781,0,-254.98	0/1:140:66,74:66:2322:74:2643:-195.927,0,-166.824	0/1:226:121,104:121:4275:104:3728:-267.049,0,-316.612	0/1:170:90,80:90:3167:80:2847:-204.665,0,-233.969	0/1:83:41,42:41:1451:42:1508:-111.029,0,-104.195	0/1:140:77,62:77:2731:62:2224:-158.229,0,-202.785	0/1:293:138,155:138:4821:155:5524:-409.079,0,-345.613	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4582	0/1:70:56,14:56:1996:14:496:-23.895,0,-158.742	0/1:49:25,24:25:884:24:848:-61.8886,0,-65.0062	0/1:198:120,78:120:4282:78:2780:-190.545,0,-325.698	0/1:285:156,128:156:5496:128:4596:-327.956,0,-408.405	0/1:112:62,49:62:2202:49:1741:-122.902,0,-164.254	0/1:150:64,86:64:2296:86:3063:-230.684,0,-161.213	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3127	0/1:269:156,113:156:5551:113:4030:-281.857,0,-418.173	0/1:106:62,43:62:2177:43:1536:-106.618,0,-163.613	0/1:313:144,168:144:5080:168:6006:-446.424,0,-361.114	0/1:303:142,161:142:5016:161:5738:-425.319,0,-360.075	0/1:197:102,95:102:3569:95:3394:-246.338,0,-262.041	0/1:215:139,76:139:4829:76:2728:-181.041,0,-369.698	0/1:265:179,86:179:6303:86:3050:-194.953,0,-487.277	0/1:55:20,35:20:712:35:1256:-96.7855,0,-47.7678	0/1:109:53,56:53:1895:56:2000:-146.805,0,-137.531	0/1:93:44,49:44:1568:49:1764:-131.027,0,-113.105	0/1:143:73,70:73:2579:70:2520:-184.003,0,-188.937	0/1:142:100,42:100:3522:42:1491:-91.7226,0,-274.349	0/1:144:107,37:107:3728:37:1299:-73.5353,0,-292.24	0/1:103:58,45:58:2028:45:1608:-114.004,0,-151.7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chr04	27190951	.	C	T	25193.7	PASS	AB=0.526296;ABP=18.9986;AC=42;AF=0.225806;AN=186;AO=1407;CIGAR=1X;DP=6066;DPB=6066;DPRA=1.01035;EPP=2819.91;EPPR=9637.17;GTI=1;LEN=1;MEANALT=1;MQM=59.9815;MQMR=59.9976;NS=93;NUMALT=1;ODDS=0.156179;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49438;QR=155930;RO=4658;RPL=1354;RPP=2615.26;RPPR=8848.68;RPR=53;RUN=1;SAF=1382;SAP=2844.98;SAR=25;SRF=4559;SRP=9276.1;SRR=99;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:9,7:9:311:7:248:-17.8477,0,-23.5072	0/0:16:16,0:16:550:0:0:0,-4.81648,-49.8234	0/0:65:65,0:65:2168:0:0:0,-19.5669,-195.379	0/0:123:122,1:122:4181:1:32:0,-33.8274,-373.28	0/1:19:8,11:8:275:11:388:-29.5378,0,-19.3639	0/1:24:9,15:9:315:15:532:-40.9884,0,-21.4625	0/1:113:41,72:41:1431:72:2536:-194.429,0,-95.0686	0/1:78:40,38:40:1379:38:1352:-98.5,0,-100.923	0/0:60:60,0:60:2042:0:0:0,-18.0618,-184.045	0/0:78:78,0:78:2657:0:0:0,-23.4803,-239.374	0/1:83:40,43:40:1318:43:1494:-109.766,0,-93.9231	0/0:66:66,0:66:2154:0:0:0,-19.868,-194.12	0/0:84:84,0:84:2740:0:0:0,-25.2865,-246.845	0/0:101:101,0:101:3346:0:0:0,-30.404,-301.366	0/0:83:83,0:83:2622:0:0:0,-24.9855,-236.228	0/1:41:18,23:18:540:23:801:-60.0645,0,-36.5465	0/0:99:99,0:99:3271:0:0:0,-29.802,-294.61	0/0:49:49,0:49:1650:0:0:0,-14.7505,-148.783	0/1:40:20,20:20:658:20:691:-50.4691,0,-47.4869	0/1:76:45,31:45:1519:31:1108:-77.1527,0,-114.119	0/1:95:51,44:51:1785:44:1554:-111.552,0,-132.33	0/0:33:33,0:33:1116:0:0:0,-9.93399,-100.738	0/1:76:29,47:29:988:47:1644:-125.367,0,-66.3473	0/1:98:60,38:60:2013:38:1356:-92.8395,0,-151.935	0/0:26:26,0:26:911:0:0:0,-7.82678,-82.305	0/1:171:92,79:92:3128:79:2780:-198.965,0,-230.273	0/1:58:22,36:22:733:36:1251:-95.4244,0,-48.8182	0/1:41:19,22:19:607:22:772:-57.459,0,-42.5919	0/0:135:135,0:135:4577:0:0:0,-40.639,-412.109	0/1:43:22,21:22:761:21:731:-53.1661,0,-55.8626	0/1:68:29,39:29:977:39:1380:-104.029,0,-67.7651	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:8,2:8:271:2:72:-3.82642,0,-21.7091	0/0:4:4,0:4:121:0:0:0,-1.20412,-11.1896	.:.:.:.:.:.:.:.	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:194:194,0:194:6322:0:0:0,-58.3998,-569.113	0/0:102:102,0:102:3480:0:0:0,-30.7051,-313.419	0/0:86:86,0:86:2871:0:0:0,-25.8886,-258.631	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:71:31,40:31:1053:40:1420:-106.724,0,-73.7008	0/1:38:16,22:16:542:22:758:-57.0976,0,-37.6611	0/1:83:38,45:38:1317:45:1587:-118.134,0,-93.8419	0/1:115:67,48:67:2168:48:1695:-118.217,0,-160.759	0/0:72:72,0:72:2348:0:0:0,-21.6742,-211.577	0/0:65:65,0:65:2237:0:0:0,-19.5669,-201.589	0/0:51:51,0:51:1761:0:0:0,-15.3525,-158.771	0/1:68:55,13:55:1880:13:460:-21.2653,0,-149.004	0/1:96:40,56:40:1408:56:1974:-149.035,0,-98.1183	0/0:56:56,0:56:1961:0:0:0,-16.8577,-176.764	0/0:103:103,0:103:3508:0:0:0,-31.0061,-315.938	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:63:63,0:63:2140:0:0:0,-18.9649,-192.866	0/1:30:14,16:14:483:16:568:-42.421,0,-34.7664	0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1752	0/1:36:15,21:15:478:21:735:-55.6343,0,-32.4859	0/1:45:23,22:23:785:22:784:-57.3376,0,-57.4172	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:9:6,3:6:208:3:89:-5.59509,0,-16.3498	0/1:58:21,37:21:700:37:1316:-101.282,0,-45.851	0/0:103:103,0:103:3318:0:0:0,-31.0061,-298.846	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:120:56,64:56:1959:64:2242:-165.917,0,-140.459	0/1:108:45,63:45:1529:63:2227:-168.183,0,-105.385	0/1:81:33,48:33:1148:48:1678:-126.922,0,-79.2397	0/0:22:22,0:22:774:0:0:0,-6.62266,-69.9802	0/0:60:60,0:60:2056:0:0:0,-18.0618,-185.308	0/0:38:37,1:37:1262:1:36:0,-7.84086,-110.277	0/0:31:31,0:31:1016:0:0:0,-9.33193,-91.7346	0/0:54:54,0:54:1815:0:0:0,-16.2556,-163.626	0/0:78:78,0:78:2529:0:0:0,-23.4803,-227.859	0/1:22:15,7:15:528:7:236:-14.945,0,-41.2287	0/1:52:24,28:24:826:28:983:-73.129,0,-59.0006	0/0:39:38,1:38:1284:1:36:0,-8.14189,-112.254	0/0:82:81,1:81:2783:1:36:0,-21.0862,-247.114	0/0:110:110,0:110:3564:0:0:0,-33.1133,-320.977	0/0:47:47,0:47:1614:0:0:0,-14.1484,-145.542	0/0:71:70,1:70:2401:1:36:0,-17.7749,-212.749	0/1:8:5,3:5:167:3:104:-7.29457,0,-12.9502	0/0:61:61,0:61:2027:0:0:0,-18.3628,-182.695	0/0:56:56,0:56:1867:0:0:0,-16.8577,-168.302	0/0:124:123,0:123:4246:0:0:0,-37.0267,-381.97	0/0:101:101,0:101:3366:0:0:0,-30.404,-303.161	0/0:78:78,0:78:2494:0:0:0,-23.4803,-224.708	0/1:105:44,61:44:1437:61:2129:-160.268,0,-98.0036	0/1:161:76,85:76:2474:85:2983:-220.237,0,-174.447	0/0:24:24,0:24:824:0:0:0,-7.22472,-74.4725	0/0:81:81,0:81:2606:0:0:0,-24.3834,-234.787	0/0:73:73,0:73:2343:0:0:0,-21.9752,-211.126	0/0:72:72,0:72:2335:0:0:0,-21.6742,-210.407	0/1:116:52,64:52:1696:64:2223:-165.414,0,-117.996	0/1:86:20,66:20:622:66:2309:-182.182,0,-30.387	0/0:61:61,0:61:2059:0:0:0,-18.3628,-185.576	0/0:103:103,0:103:3396:0:0:0,-31.0061,-305.865
chr04	27233421	.	AGAAG	AGAAA	100166	PASS	AB=0.499602;ABP=3.0224;AC=41;AF=0.218085;AN=188;AO=4412;CIGAR=4M1X;DP=20045;DPB=20044.6;DPRA=1.25765;EPP=9583.55;EPPR=33775.9;GTI=0;LEN=1;MEANALT=1.90385;MQM=59.8112;MQMR=59.976;NS=94;NUMALT=1;ODDS=5.71755;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156721;QR=541779;RO=15553;RPL=2199;RPP=3.10677;RPPR=98.9612;RPR=2213;RUN=1;SAF=2199;SAP=3.10677;SAR=2213;SRF=8191;SRP=98.9612;SRR=7362;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:90:53,37:53:1851:37:1320:-92.0092,0,-139.775	0/0:344:344,0:344:11992:0:0:0,-103.554,-1079.18	0/0:299:299,0:299:10398:0:0:0,-90.008,-935.773	0/0:500:497,1:497:17251:1:36:0,-146.674,-1548.69	0/1:168:102,66:102:3581:66:2338:-160.094,0,-271.926	0/1:151:87,64:87:3013:64:2283:-160.276,0,-225.948	0/1:308:144,164:144:5007:164:5782:-427.777,0,-358.074	0/1:421:198,221:198:6830:221:7886:-583.329,0,-488.367	0/0:260:259,0:259:9082:0:0:0,-77.9668,-817.021	0/0:233:232,0:232:8042:0:0:0,-69.839,-723.5	0/1:156:61,95:61:2154:95:3370:-256.545,0,-147.166	0/0:214:214,0:214:7471:0:0:0,-64.4204,-672.457	0/0:170:170,0:170:5945:0:0:0,-51.1751,-535.143	0/0:195:192,2:192:6705:2:72:0,-51.9277,-596.712	0/0:152:152,0:152:5363:0:0:0,-45.7566,-482.811	0/1:132:76,56:76:2665:56:2008:-141.257,0,-200.363	0/0:155:154,0:154:5363:0:0:0,-46.3586,-482.546	0/0:149:149,0:149:5246:0:0:0,-44.8535,-472.286	0/1:109:62,45:62:2170:45:1604:-112.061,0,-163.007	0/1:481:208,272:208:7208:272:9669:-725.409,0,-504.093	0/1:549:238,304:238:8227:304:10840:-810.63,0,-577.007	0/0:201:201,0:201:7012:0:0:0,-60.507,-631.163	0/1:299:121,176:121:4209:176:6207:-469.056,0,-289.328	0/1:269:129,138:129:4471:138:4937:-363.709,0,-321.886	0/0:113:111,0:111:3876:0:0:0,-33.4143,-348.682	0/1:579:305,271:305:10626:271:9618:-691.815,0,-782.621	0/1:399:192,207:192:6673:207:7371:-543.199,0,-480.558	0/1:76:36,40:36:1270:40:1428:-105.933,0,-91.7241	0/0:499:499,0:499:17353:0:0:0,-150.214,-1561.46	0/1:207:129,78:129:4488:78:2785:-188.533,0,-341.785	0/1:245:116,129:116:4091:129:4590:-339.509,0,-294.629	0/1:18:9,9:9:309:9:311:-22.9052,0,-22.7229	0/1:40:21,18:21:724:18:648:-46.5519,0,-53.3769	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/0:11:11,0:11:390:0:0:0,-3.31133,-35.439	0/0:23:22,0:22:746:0:0:0,-6.62266,-67.1321	0/0:429:425,0:425:14871:0:0:0,-127.938,-1337.83	0/0:368:365,2:365:12717:2:72:0,-104.001,-1137.56	0/0:201:200,0:200:6982:0:0:0,-60.206,-628.105	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:307:172,132:172:5962:132:4712:-332.386,0,-444.867	0/1:69:43,25:43:1494:25:900:-60.568,0,-114	0/1:300:153,147:153:5320:147:5241:-381.478,0,-388.633	0/1:193:100,93:100:3505:93:3293:-238.48,0,-257.537	0/0:142:142,0:142:4862:0:0:0,-42.7463,-437.754	0/0:178:178,0:178:6182:0:0:0,-53.5833,-556.494	0/0:230:230,0:230:8047:0:0:0,-69.2369,-724.273	0/1:307:151,155:151:5238:155:5451:-398.339,0,-379.195	0/1:184:98,85:98:3454:85:3052:-219.508,0,-255.677	0/0:405:404,1:404:14051:1:36:0,-118.319,-1260.71	0/0:309:308,0:308:10753:0:0:0,-92.7172,-967.352	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5222	0/0:318:318,0:318:11104:0:0:0,-95.7275,-999.28	0/1:149:65,84:65:2299:84:3001:-225.464,0,-162.318	0/0:15:14,0:14:488:0:0:0,-4.21442,-43.8912	0/1:208:87,117:87:2922:117:4160:-312.774,0,-201.482	0/1:146:64,82:64:2223:82:2910:-218.162,0,-156.384	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:38:13,22:13:452:22:792:-60.7772,0,-30.1789	0/1:154:78,76:78:2716:76:2700:-196.883,0,-198.326	0/0:282:281,1:281:9829:1:36:0,-81.2922,-880.986	0/0:13:13,0:13:434:0:0:0,-3.91339,-39.3797	0/1:300:150,150:150:5226:150:5330:-389.521,0,-380.179	0/1:359:179,178:179:6237:178:6275:-457,0,-453.612	0/1:166:105,59:105:3645:59:2082:-137.999,0,-278.615	0/0:180:178,1:178:6237:1:36:0,-50.6284,-557.731	0/0:294:292,2:292:10155:2:72:0,-81.6661,-907.083	0/0:282:282,0:282:9788:0:0:0,-84.8905,-880.904	0/0:74:74,0:74:2578:0:0:0,-22.2762,-232.27	0/0:145:145,0:145:5059:0:0:0,-43.6493,-455.467	0/0:209:208,0:208:7204:0:0:0,-62.6142,-648.081	0/1:35:17,18:17:595:18:644:-47.7545,0,-43.3416	0/1:161:87,74:87:3021:74:2618:-187.367,0,-223.66	0/0:105:105,0:105:3696:0:0:0,-31.6081,-332.847	0/0:408:403,0:403:13987:0:0:0,-121.315,-1258.3	0/0:316:316,0:316:10966:0:0:0,-95.1255,-986.878	0/0:230:223,6:223:7695:6:216:0,-49.402,-672.844	0/0:241:235,2:235:8168:2:72:0,-64.8672,-728.264	0/1:19:8,11:8:275:11:388:-29.5378,0,-19.3642	0/0:212:212,0:212:7393:0:0:0,-63.8184,-665.439	0/0:222:222,0:222:7731:0:0:0,-66.8287,-695.848	0/0:573:570,1:570:19869:1:36:0,-168.65,-1784.17	0/0:237:237,0:237:8261:0:0:0,-71.3441,-743.526	0/0:156:156,0:156:5429:0:0:0,-46.9607,-488.753	0/1:246:123,121:123:4280:121:4282:-311.738,0,-311.573	0/1:350:177,170:177:6242:170:6051:-439.903,0,-457.1	0/0:89:89,0:89:3132:0:0:0,-26.7917,-282.111	0/0:153:153,0:153:5363:0:0:0,-46.0576,-482.816	0/0:168:167,0:167:5831:0:0:0,-50.272,-524.559	0/0:92:92,0:92:3232:0:0:0,-27.6948,-291.107	0/1:221:123,98:123:4258:98:3445:-243.675,0,-316.88	0/1:162:67,93:67:2312:93:3247:-243.923,0,-159.817	0/0:147:146,1:146:5042:1:36:0,-40.6531,-450.342	0/0:270:266,0:266:9358:0:0:0,-80.074,-841.886
chr04	27235808	.	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chr04	27235840	.	A	G	22766.7	PASS	AB=0.492857;ABP=4.25114;AC=42;AF=0.223404;AN=188;AO=1389;CIGAR=1X;DP=6459;DPB=6459;DPRA=1.19641;EPP=3019.19;EPPR=11005.9;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.9539;MQMR=59.9891;NS=94;NUMALT=1;ODDS=0.143482;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49377;QR=180860;RO=5067;RPL=1389;RPP=3019.19;RPPR=11005.9;RPR=0;RUN=1;SAF=0;SAP=3019.19;SAR=1389;SRF=0;SRP=11005.9;SRR=5067;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:15,26:15:532:26:920:-70.7748,0,-35.8709	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:141:141,0:141:5008:0:0:0,-42.4452,-450.869	0/0:86:86,0:86:3057:0:0:0,-25.8886,-275.302	0/1:37:12,25:12:432:25:896:-69.8222,0,-28.0831	0/1:35:22,13:22:780:13:468:-31.9236,0,-59.987	0/1:64:24,40:24:860:40:1416:-108.471,0,-58.4559	0/1:156:77,79:77:2748:79:2809:-206.088,0,-200.602	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:47:47,0:47:1664:0:0:0,-14.1484,-150.045	0/1:54:26,28:26:932:28:1000:-74.0598,0,-67.9432	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:58:33,25:33:1180:25:874:-61.5155,0,-89.0483	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:34:14,20:14:500:20:700:-53.0885,0,-35.1012	0/1:115:62,53:62:2232:53:1896:-136.3,0,-166.525	0/1:140:80,60:80:2856:60:2124:-149.275,0,-215.134	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:55:32,23:32:1148:23:820:-57.5659,0,-87.0732	0/1:25:15,10:15:540:10:351:-24.4009,0,-41.4108	0/0:53:53,0:53:1876:0:0:0,-15.9546,-169.116	0/1:181:88,93:88:3118:93:3332:-245.611,0,-226.359	0/1:133:68,65:68:2429:65:2286:-165.965,0,-178.827	0/1:26:16,10:16:572:10:360:-24.9175,0,-43.9866	0/0:166:166,0:166:5918:0:0:0,-49.971,-532.728	0/1:119:65,54:65:2324:54:1920:-137.255,0,-173.598	0/1:71:39,32:39:1392:32:1136:-81.1758,0,-104.206	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:144:143,1:143:5107:1:36:0,-39.75,-456.167	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:71:40,31:40:1391:31:1108:-78.6579,0,-104.108	0/1:32:12,20:12:428:20:716:-55.1348,0,-29.2258	0/1:99:44,55:44:1576:55:1966:-147.413,0,-112.33	0/1:38:20,18:20:720:18:632:-45.7676,0,-53.6896	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.169	0/0:70:70,0:70:2488:0:0:0,-21.0721,-224.174	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/1:108:66,42:66:2356:42:1500:-102.755,0,-179.788	0/1:73:34,39:34:1190:39:1388:-103.244,0,-85.4258	0/0:123:123,0:123:4373:0:0:0,-37.0267,-393.745	0/0:167:165,1:165:5908:1:36:0,-46.7325,-528.231	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.391	0/1:79:23,56:23:824:56:2000:-156.492,0,-50.7019	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:105:58,47:58:2076:47:1664:-118.437,0,-155.502	0/1:8:6,2:6:182:2:72:-4.42848,0,-14.2696	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:78:49,27:49:1748:27:960:-63.4766,0,-134.366	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.406	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:113:55,58:55:1967:58:2067:-152.284,0,-143.288	0/1:127:50,77:50:1784:77:2740:-208.613,0,-122.612	0/1:66:27,39:27:960:39:1384:-104.986,0,-66.8483	0/0:39:38,1:38:1356:1:36:0,-8.14189,-118.742	0/0:120:118,2:118:4209:2:72:0,-29.2869,-372.154	0/0:179:176,3:176:6274:3:108:0,-43.8092,-554.678	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:41:21,20:21:748:20:716:-52.4255,0,-55.3031	0/1:79:50,29:50:1758:29:1023:-68.6004,0,-134.71	0/0:88:88,0:88:3133:0:0:0,-26.4906,-282.195	0/0:93:93,0:93:3297:0:0:0,-27.9958,-296.95	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.657	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:85:85,0:85:2987:0:0:0,-25.5875,-269.06	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.846	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/1:35:20,15:20:716:15:540:-38.4005,0,-54.2317	0/1:106:47,59:47:1676:59:2085:-156.011,0,-119.218	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/1:138:75,63:75:2680:63:2228:-159.241,0,-199.903	0/1:34:16,18:16:572:18:636:-47.333,0,-41.5784	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.953
chr04	27279987	.	TTCCC	CTCCC,CTCCG	205555	PASS	AB=0.473477,0.51911;ABP=29.3884,16.7046;AC=147,41;AF=0.781915,0.218085;AN=188;AO=7437,2253;CIGAR=1X4M,1X3M1X;DP=9774;DPB=9775.4;DPRA=0,1.19615;EPP=16152.3,4895.34;EPPR=11.6962;GTI=0;LEN=1,5;MEANALT=2.31915,2.79592;MQM=59.9533,59.6968;MQMR=60;NS=94;NUMALT=2;ODDS=1.4587;PAIRED=0,0;PAIREDR=0;PAO=5.5,5.5;PQA=187,187;PQR=0;PRO=0;QA=262804,78283;QR=144;RO=4;RPL=7437,2253;RPP=16152.3,4895.34;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=7437,2253;SAP=16152.3,4895.34;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,18,22:0:0:18,22:640,751:-113.444,-61.2824,-55.8638,-52.5108,0,-45.8881	1/1:115:0,115,0:0:0:115,0:4065,0:-366.037,-34.6185,0,-366.037,-34.6185,-366.037	1/1:96:0,96,0:0:0:96,0:3363,0:-302.878,-28.8989,0,-302.878,-28.8989,-302.878	1/1:275:0,273,0:0:0:273,0:9590,0:-862.512,-82.1812,0,-862.512,-82.1812,-862.512	1/2:65:0,37,28:0:0:37,28:1320,980:-187.688,-80.077,-68.9389,-107.964,0,-99.535	1/2:61:0,33,28:0:0:33,28:1150,981:-173.68,-80.1612,-70.2272,-93.868,0,-85.4391	1/2:185:0,85,99:0:0:85,99:3013,3451:-525.972,-280.511,-254.923,-245.394,0,-215.592	1/2:172:0,97,74:0:0:97,74:3449,2602:-492.989,-211.918,-182.719,-281.211,0,-258.935	1/1:44:0,44,0:0:0:44,0:1549,0:-139.692,-13.2453,0,-139.692,-13.2453,-139.692	1/1:129:0,127,0:0:0:127,0:4523,0:-406.857,-38.2308,0,-406.857,-38.2308,-406.857	1/2:58:0,24,34:0:0:24,34:843,1186:-165.403,-96.7947,-89.57,-68.9587,0,-58.7236	1/1:52:0,52,0:0:0:52,0:1817,0:-163.809,-15.6536,0,-163.809,-15.6536,-163.809	1/1:84:0,84,0:0:0:84,0:2961,0:-266.638,-25.2865,0,-266.638,-25.2865,-266.638	1/1:64:0,62,0:0:0:62,0:2169,0:-195.175,-18.6639,0,-195.175,-18.6639,-195.175	1/1:76:0,76,0:0:0:76,0:2678,0:-241.264,-22.8783,0,-241.264,-22.8783,-241.264	1/2:77:0,41,36:0:0:41,36:1445,1269:-221.263,-103.615,-91.2723,-117.943,0,-107.106	1/1:57:0,57,0:0:0:57,0:1985,0:-178.92,-17.1587,0,-178.92,-17.1587,-178.92	1/1:50:0,50,0:0:0:50,0:1726,0:-155.62,-15.0515,0,-155.62,-15.0515,-155.62	1/2:49:0,28,21:0:0:28,21:996,741:-141.863,-60.6908,-52.262,-81.526,0,-75.2044	1/2:263:0,148,111:0:0:148,111:5278,3857:-743.821,-313.568,-269.016,-430.267,0,-396.852	1/2:205:0,79,125:0:0:79,125:2784,4303:-576.138,-349.472,-325.691,-226.665,0,-189.036	1/1:106:0,105,0:0:0:105,0:3725,0:-335.167,-31.6082,0,-335.167,-31.6082,-335.167	1/2:87:0,38,48:0:0:38,48:1336,1693:-246.641,-137.894,-126.455,-108.787,0,-94.3376	1/2:131:0,63,68:0:0:63,68:2224,2386:-375.611,-194.505,-175.54,-181.458,0,-160.988	1/1:63:0,61,1:0:0:61,1:2145,36:-193.018,-18.3628,0,-190.081,-15.3555,-189.78	1/2:318:0,150,165:0:0:150,165:5310,5639:-890.097,-457.563,-412.409,-432.51,0,-382.84	1/2:212:0,88,123:0:0:88,123:3141,4299:-605.684,-349.614,-323.123,-255.984,0,-218.958	1/2:45:0,23,22:0:0:23,22:796,765:-127.225,-62.545,-55.6213,-65.0267,0,-58.404	1/1:308:0,300,1:0:0:300,1:10621,36:-955.496,-90.309,0,-952.559,-87.3646,-952.258	1/2:103:0,45,56:0:0:45,56:1601,1980:-291.728,-161.251,-147.705,-130.472,0,-113.615	1/2:135:0,74,60:0:0:74,60:2612,2114:-384.798,-172.1,-149.823,-212.691,0,-194.63	1/2:9:0,5,4:0:0:5,4:180,136:-26.0693,-11.3711,-9.86595,-15.0469,0,-13.8428	1/2:20:0,11,8:0:0:11,8:392,286:-55.2695,-23.3178,-20.0064,-31.9492,0,-29.541	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:11:0,11,0:0:0:11,0:388,0:-35.2574,-3.31133,0,-35.2574,-3.31133,-35.2574	1/1:208:0,206,1:0:0:206,1:7295,28:-656.327,-62.0122,0,-654.109,-59.7934,-653.808	1/1:239:0,236,0:0:0:236,0:8402,0:-755.82,-71.0431,0,-755.82,-71.0431,-755.82	1/1:72:0,71,0:0:0:71,0:2488,0:-223.871,-21.3731,0,-223.871,-21.3731,-223.871	1/1:8:0,8,0:0:0:8,0:269,0:-24.5361,-2.40824,0,-24.5361,-2.40824,-24.5361	1/2:86:0,38,48:0:0:38,48:1342,1684:-246.637,-137.35,-125.91,-109.639,0,-95.19	1/2:43:0,23,18:0:0:23,18:799,618:-115.176,-50.2151,-43.2914,-64.9956,0,-59.5771	1/2:107:0,39,67:0:0:39,67:1396,2285:-299.349,-185.501,-173.761,-113.966,0,-93.797	1/2:82:1,39,42:1:36:39,42:1345,1461:-224.798,-115.842,-107.04,-106.306,0,-96.6003	1/1:64:0,64,0:0:0:64,0:2262,0:-203.783,-19.2659,0,-203.783,-19.2659,-203.783	1/1:97:0,94,0:0:0:94,0:3355,0:-301.894,-28.2968,0,-301.894,-28.2968,-301.894	1/1:112:0,110,0:0:0:110,0:3879,0:-348.944,-33.1133,0,-348.944,-33.1133,-348.944	1/2:195:0,85,109:0:0:85,109:2991,3784:-551.196,-307.711,-282.123,-243.604,0,-210.792	1/2:147:0,63,83:0:0:63,83:2226,2877:-415.133,-233.844,-214.879,-181.308,0,-156.323	1/1:130:0,129,0:0:0:129,0:4598,0:-413.755,-38.8329,0,-413.755,-38.8329,-413.755	1/1:198:2,195,0:2:72:195,0:6903,0:-614.503,-52.826,0,-615.105,-58.7009,-620.98	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:199:0,198,0:0:0:198,0:7034,0:-632.766,-59.6039,0,-632.766,-59.6039,-632.766	1/2:33:0,16,17:0:0:16,17:559,608:-95.4016,-49.9347,-45.1182,-45.8202,0,-40.7027	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:177:0,75,101:0:0:75,101:2674,3513:-503.581,-285.607,-263.03,-217.968,0,-187.564	1/2:26:0,14,12:0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chr04	27324485	.	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chr04	27324562	.	T	G	183655	PASS	AB=0.470404;ABP=39.3858;AC=146;AF=0.776596;AN=188;AO=8640;CIGAR=1X;DP=11203;DPB=11203;DPRA=40.5688;EPP=18764.5;EPPR=5555.47;GTI=0;LEN=1;MEANALT=1.06522;MQM=59.9836;MQMR=59.9797;NS=94;NUMALT=1;ODDS=1.09837;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=307956;QR=91137;RO=2557;RPL=8640;RPP=18764.5;RPPR=5555.47;RPR=0;RUN=1;SAF=0;SAP=18764.5;SAR=8640;SRF=0;SRP=5555.47;SRR=2557;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:27,38:27:972:38:1360:-103.134,0,-68.231	1/1:162:0,162:0:0:162:5784:-520.677,-48.7669,0	1/1:160:0,160:0:0:160:5697:-512.852,-48.1648,0	1/1:241:0,241:0:0:241:8608:-774.719,-72.5482,0	0/1:95:39,56:39:1404:56:1992:-150.956,0,-98.0614	0/1:39:17,22:17:612:22:792:-59.8655,0,-43.6733	0/1:169:79,90:79:2824:90:3208:-238.07,0,-203.525	0/1:180:94,86:94:3291:86:3057:-221.173,0,-242.118	1/1:127:0,126:0:0:126:4488:-403.731,-37.9298,0	1/1:143:0,143:0:0:143:5108:-459.864,-43.0473,0	0/1:82:50,32:50:1780:32:1144:-78.5851,0,-135.798	1/1:98:1,96:1:36:96:3436:-305.855,-25.9615,0	1/1:93:1,91:1:36:91:3212:-285.276,-24.4563,0	1/1:74:0,74:0:0:74:2644:-238.207,-22.2762,0	1/1:80:2,78:2:72:78:2774:-243.064,-17.2457,0	0/1:57:36,21:36:1288:21:752:-50.8475,0,-99.0649	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	0/1:74:30,44:30:1080:44:1554:-117.874,0,-75.237	0/1:334:183,151:183:6514:151:5380:-383.791,0,-485.801	0/1:212:129,83:129:4593:83:2960:-202.816,0,-349.717	1/1:131:0,131:0:0:131:4667:-420.193,-39.4349,0	0/1:73:44,29:44:1549:29:1036:-71.5787,0,-117.725	0/1:169:92,77:92:3258:77:2732:-195.25,0,-242.566	1/1:118:0,118:0:0:118:4204:-378.543,-35.5215,0	0/1:320:183,137:183:6525:137:4900:-344.823,0,-491.005	0/1:258:127,131:127:4544:131:4667:-342.516,0,-331.461	0/1:50:34,16:34:1208:16:576:-37.1235,0,-93.9746	1/1:289:1,288:1:36:288:10275:-921.082,-83.3994,0	0/1:116:61,55:61:2184:55:1957:-141.485,0,-161.906	0/1:137:71,66:71:2548:66:2351:-170.608,0,-188.329	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	1/1:7:0,7:0:0:7:240:-21.9347,-2.10721,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:253:1,252:1:36:252:8991:-805.573,-72.5623,0	1/1:275:1,274:1:36:274:9767:-875.384,-79.185,0	1/1:95:0,94:0:0:94:3342:-300.638,-28.2968,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:181:108,73:108:3841:73:2592:-179.044,0,-291.4	0/1:54:25,29:25:884:29:1023:-76.1261,0,-63.6227	0/1:139:64,75:64:2280:75:2676:-199.243,0,-163.619	0/1:114:53,61:53:1904:61:2176:-161.789,0,-137.32	1/1:62:0,62:0:0:62:2203:-198.449,-18.6639,0	1/1:126:0,126:0:0:126:4483:-403.642,-37.9298,0	1/1:171:0,171:0:0:171:6076:-546.947,-51.4761,0	0/1:126:61,65:61:2157:65:2320:-171.131,0,-156.466	0/1:215:91,124:91:3260:124:4444:-335.409,0,-228.899	1/1:176:1,175:1:36:175:6252:-559.178,-49.383,0	1/1:274:2,272:2:72:272:9715:-867.308,-75.6455,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:177:0,177:0:0:177:6343:-570.96,-53.2823,0	0/1:44:22,22:22:792:22:784:-57.6386,0,-58.3604	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:168:107,61:107:3764:61:2176:-145.533,0,-288.255	0/1:29:17,12:17:608:12:407:-28.2256,0,-46.3222	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:22:11,11:11:392:11:396:-29.3601,0,-28.9974	0/1:106:47,59:47:1680:59:2108:-158.08,0,-119.578	1/1:134:1,133:1:36:133:4738:-422.981,-36.7397,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:225:126,99:126:4516:99:3528:-249.999,0,-338.876	0/1:247:139,108:139:4976:108:3844:-271.804,0,-373.634	1/1:77:0,77:0:0:77:2733:-246.213,-23.1793,0	1/1:81:0,81:0:0:81:2888:-260.157,-24.3834,0	1/1:166:0,166:0:0:166:5903:-531.381,-49.971,0	1/1:101:0,101:0:0:101:3616:-325.646,-30.404,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:110:0,110:0:0:110:3923:-353.264,-33.1133,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:152:80,72:80:2825:72:2526:-181.834,0,-208.733	1/1:104:3,101:3:108:101:3582:-312.512,-21.232,0	1/1:242:1,241:1:36:241:8572:-767.886,-69.251,0	1/1:189:0,188:0:0:188:6716:-604.158,-56.5936,0	1/1:87:0,87:0:0:87:3084:-277.79,-26.1896,0	1/1:174:1,173:1:36:173:6162:-551.084,-48.7809,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:130:1,129:1:36:129:4599:-410.478,-35.5356,0	1/1:141:1,140:1:36:140:5000:-445.924,-38.847,0	1/1:338:1,337:1:36:337:12023:-1078.32,-98.1499,0	1/1:128:0,128:0:0:128:4552:-409.847,-38.5318,0	1/1:85:0,85:0:0:85:3026:-272.57,-25.5876,0	0/1:87:41,46:41:1452:46:1648:-122.419,0,-104.786	0/1:171:80,91:80:2864:91:3248:-241.066,0,-206.51	1/1:56:0,56:0:0:56:1986:-179.013,-16.8577,0	1/1:94:0,94:0:0:94:3351:-301.807,-28.2968,0	1/1:90:0,90:0:0:90:3215:-289.572,-27.0927,0	1/1:39:0,39:0:0:39:1381:-124.587,-11.7402,0	0/1:119:63,55:63:2260:55:1961:-140.921,0,-167.821	0/1:109:80,29:80:2856:29:1040:-61.1021,0,-224.466	1/1:139:1,138:1:36:138:4916:-438.995,-38.2449,0	1/1:106:0,106:0:0:106:3774:-339.86,-31.9092,0
chr04	27325152	.	A	T	256765	PASS	AB=0.574899;ABP=207.612;AC=148;AF=0.787234;AN=188;AO=9297;CIGAR=1X;DP=11099;DPB=11099;DPRA=0;EPP=20139.1;EPPR=3896.48;GTI=2;LEN=1;MEANALT=1.01064;MQM=59.9644;MQMR=59.9756;NS=94;NUMALT=1;ODDS=2.07174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=332327;QR=63650;RO=1801;RPL=5194;RPP=281.021;RPPR=16.8144;RPR=4103;RUN=1;SAF=5198;SAP=285.113;SAR=4099;SRF=956;SRP=17.8658;SRR=845;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:89:41,48:41:1460:48:1709:-127.302,0,-104.904	1/1:106:3,103:3:108:103:3683:-321.597,-21.834,0	1/1:260:0,260:0:0:260:9274:-834.619,-78.2678,0	1/1:326:0,326:0:0:326:11643:-1047.72,-98.1358,0	0/1:70:41,29:41:1440:29:1036:-72.4772,0,-108.824	0/1:38:15,23:15:536:23:819:-62.5924,0,-37.1357	0/1:39:15,24:15:528:24:860:-65.9817,0,-36.1112	0/1:241:112,129:112:3988:129:4594:-341.076,0,-286.564	1/1:220:2,218:2:68:218:7800:-695.57,-59.7689,0	1/1:128:0,128:0:0:128:4559:-409.776,-38.5318,0	0/1:71:25,46:25:888:46:1648:-127.235,0,-58.8659	1/1:153:0,153:0:0:153:5411:-487.123,-46.0576,0	1/1:142:0,142:0:0:142:5091:-458.332,-42.7463,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:147:0,147:0:0:147:5279:-475.244,-44.2514,0	0/1:86:48,38:48:1690:38:1368:-97.5322,0,-126.485	1/1:72:0,72:0:0:72:2575:-231.999,-21.6742,0	1/1:47:0,47:0:0:47:1682:-151.667,-14.1484,0	0/1:54:26,28:26:907:28:998:-73.8786,0,-65.6887	0/1:186:64,122:64:2265:122:4367:-337.212,0,-148.12	0/1:236:98,138:98:3462:138:4948:-374.426,0,-240.752	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	0/1:84:38,46:38:1355:46:1648:-123.322,0,-96.9632	0/1:69:22,47:22:776:47:1686:-131.256,0,-49.3911	1/1:131:0,131:0:0:131:4618:-415.782,-39.4349,0	0/1:259:92,167:92:3255:167:5991:-461.298,0,-215.207	0/1:260:101,159:101:3539:159:5693:-434.22,0,-240.452	0/1:57:31,26:31:1108:26:928:-66.6795,0,-82.8723	1/1:372:1,371:1:36:371:13241:-1187.89,-108.385,0	0/1:73:25,48:25:892:48:1720:-133.11,0,-58.6245	0/1:108:41,67:41:1433:67:2404:-184.105,0,-96.7525	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:16:0,16:0:0:16:569:-51.5402,-4.81648,0	1/1:5:0,5:0:0:5:170:-15.6335,-1.50515,0	1/1:255:0,255:0:0:255:9096:-818.616,-76.7627,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:54:0,54:0:0:54:1934:-174.336,-16.2556,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:181:75,106:75:2608:106:3766:-284.649,0,-180.478	0/1:43:24,19:24:856:19:680:-48.5849,0,-64.4168	0/1:219:73,146:73:2572:146:5223:-404.281,0,-165.804	0/1:100:60,40:60:2144:40:1440:-99.7947,0,-163.125	1/1:83:0,83:0:0:83:2963:-266.902,-24.9855,0	1/1:107:0,107:0:0:107:3835:-345.345,-32.2102,0	1/1:190:0,190:0:0:190:6806:-612.61,-57.1957,0	0/1:211:94,117:94:3340:117:4175:-312.416,0,-237.302	0/1:127:57,70:57:2023:70:2516:-188.461,0,-144.111	1/1:191:0,191:0:0:191:6852:-616.748,-57.4967,0	1/1:58:0,58:0:0:58:2067:-186.3,-17.4597,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:160:0,160:0:0:160:5732:-515.987,-48.1648,0	0/1:43:19,24:19:680:24:823:-61.4356,0,-48.5849	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:190:70,120:70:2452:120:4274:-327.483,0,-163.742	0/1:34:17,17:17:596:17:602:-44.2746,0,-43.7328	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/1:19:5,14:5:180:14:500:-39.6166,0,-10.8325	0/1:89:33,56:33:1163:56:1979:-151.589,0,-78.1134	1/1:98:0,98:0:0:98:3516:-316.649,-29.5009,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:150:63,87:63:2220:87:3128:-236.59,0,-154.908	0/1:142:62,80:62:2181:80:2876:-216.33,0,-153.809	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:119:0,119:0:0:119:4226:-380.502,-35.8226,0	1/1:207:1,206:1:36:206:7395:-661.995,-58.7149,0	1/1:173:0,173:0:0:173:6212:-559.166,-52.0782,0	1/1:58:1,57:1:36:57:2040:-180.274,-13.8615,0	1/1:74:0,74:0:0:74:2636:-237.486,-22.2762,0	1/1:60:0,60:0:0:60:2147:-192.719,-18.0618,0	0/1:25:13,12:13:460:12:432:-31.6954,0,-34.2096	0/1:80:31,49:31:1084:49:1749:-133.61,0,-73.7831	1/1:162:0,162:0:0:162:5797:-521.834,-48.7669,0	1/1:224:1,223:1:32:223:7974:-714.426,-64.2314,0	1/1:227:0,227:0:0:227:8134:-732.073,-68.3338,0	1/1:179:2,177:2:72:177:6322:-562.229,-47.0476,0	1/1:155:4,151:4:140:151:5392:-472.465,-33.7151,0	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	1/1:206:0,206:0:0:206:7358:-662.267,-62.0122,0	1/1:270:1,269:1:32:269:9621:-862.642,-78.0788,0	1/1:303:0,302:0:0:302:10796:-971.182,-90.9111,0	1/1:95:0,95:0:0:95:3377:-304.143,-28.5979,0	1/1:101:0,101:0:0:101:3632:-327.084,-30.404,0	0/1:86:34,52:34:1216:52:1846:-140.53,0,-83.858	0/1:205:101,104:101:3567:104:3725:-273.739,0,-259.528	1/1:38:0,38:0:0:38:1355:-122.25,-11.4391,0	1/1:80:0,80:0:0:80:2854:-257.097,-24.0824,0	1/1:104:0,104:0:0:104:3713:-334.371,-31.3071,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:84:40,44:40:1420:44:1567:-116.034,0,-102.811	0/1:117:64,53:64:2274:53:1895:-135.607,0,-169.698	1/1:190:0,190:0:0:190:6819:-613.778,-57.1957,0	1/1:197:0,197:0:0:197:7022:-631.97,-59.3029,0
chr04	27325171	.	C	A	237271	PASS	AB=0.561983;ABP=140.298;AC=148;AF=0.787234;AN=188;AO=8870;CIGAR=1X;DP=10690;DPB=10690;DPRA=0;EPP=230.512;EPPR=22.2859;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9649;MQMR=59.9758;NS=94;NUMALT=1;ODDS=1.89793;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=308611;QR=64521;RO=1817;RPL=8862;RPP=19194.5;RPPR=3931.22;RPR=8;RUN=1;SAF=4909;SAP=223.023;SAR=3961;SRF=970;SRP=21.0908;SRR=847;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:87:40,47:40:1418:47:1640:-121.698,0,-101.726	1/1:102:3,99:3:104:99:3436:-299.758,-21.0023,0	1/1:255:0,255:0:0:255:8891:-800.188,-76.7627,0	1/1:304:0,304:0:0:304:10477:-942.821,-91.5131,0	0/1:70:42,28:42:1500:28:968:-66.356,0,-114.222	0/1:37:15,22:15:540:22:755:-57.1287,0,-37.7984	0/1:37:14,23:14:495:23:776:-59.0128,0,-33.7449	0/1:235:113,122:113:4052:122:4243:-311.316,0,-294.125	1/1:202:1,201:1:36:201:6933:-620.462,-57.2098,0	1/1:118:0,118:0:0:118:4098:-368.525,-35.5215,0	0/1:68:25,43:25:888:43:1511:-115.813,0,-59.769	1/1:146:0,146:0:0:146:5057:-455.287,-43.9504,0	1/1:140:0,140:0:0:140:4888:-440.081,-42.1442,0	1/1:60:0,60:0:0:60:2103:-189.54,-18.0618,0	1/1:145:0,145:0:0:145:5078:-457.177,-43.6494,0	0/1:89:48,41:48:1720:41:1429:-102.112,0,-128.265	1/1:70:0,70:0:0:70:2482:-223.633,-21.0721,0	1/1:45:0,45:0:0:45:1582:-142.669,-13.5464,0	0/1:51:25,26:25:896:26:914:-67.2221,0,-65.6078	0/1:181:67,114:67:2370:114:3975:-303.461,0,-159.069	0/1:234:101,133:101:3564:133:4662:-349.311,0,-250.526	1/1:67:0,67:0:0:67:2322:-209.242,-20.169,0	0/1:81:38,43:38:1356:43:1478:-108.928,0,-97.9571	0/1:69:23,46:23:816:46:1616:-124.958,0,-52.9906	1/1:121:0,120:0:0:120:4105:-369.434,-36.1236,0	0/1:253:93,160:93:3307:160:5630:-430.64,0,-221.687	0/1:256:101,155:101:3564:155:5419:-410.79,0,-243.903	0/1:55:31,24:31:1112:24:851:-60.3528,0,-83.8347	1/1:357:1,356:1:36:356:12278:-1101.29,-103.869,0	0/1:69:25,44:25:892:44:1527:-116.95,0,-59.8286	0/1:107:42,65:42:1476:65:2231:-168.844,0,-100.922	0/1:4:2,2:2:72:2:64:-4.87457,0,-5.6326	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:15:0,15:0:0:15:512:-46.4012,-4.51545,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:247:0,247:0:0:247:8633:-776.988,-74.3544,0	1/1:57:0,57:0:0:57:1989:-179.283,-17.1587,0	1/1:53:0,53:0:0:53:1867:-168.309,-15.9546,0	1/1:8:0,8:0:0:8:271:-24.7194,-2.40824,0	0/1:183:81,102:81:2879:102:3542:-263.908,0,-204.259	0/1:44:25,19:25:892:19:664:-46.8392,0,-67.3544	0/1:212:74,138:74:2630:138:4761:-364.846,0,-173.128	0/1:99:59,40:59:2107:40:1420:-98.2954,0,-160.097	1/1:81:0,81:0:0:81:2859:-257.55,-24.3834,0	1/1:101:0,101:0:0:101:3505:-315.669,-30.404,0	1/1:185:0,185:0:0:185:6395:-575.662,-55.6906,0	0/1:206:94,112:94:3330:112:3852:-284.869,0,-237.905	0/1:122:56,66:56:1980:66:2268:-167.655,0,-141.746	1/1:181:0,181:0:0:181:6292:-566.395,-54.4864,0	1/1:53:0,53:0:0:53:1825:-164.529,-15.9546,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:155:0,155:0:0:155:5404:-486.504,-46.6597,0	0/1:43:19,24:19:684:24:835:-62.5222,0,-48.946	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	0/1:182:71,111:71:2501:111:3809:-288.072,0,-170.555	0/1:32:17,15:17:599:15:532:-38.5801,0,-44.6051	0/1:9:4,5:4:140:5:172:-13.1087,0,-10.2353	0/1:18:5,13:5:180:13:441:-34.5947,0,-11.1335	0/1:85:33,52:33:1161:52:1792:-135.969,0,-79.1882	1/1:95:0,95:0:0:95:3317:-298.751,-28.5979,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	0/1:143:60,83:60:2111:83:2894:-217.652,0,-147.207	0/1:136:62,74:62:2173:74:2553:-189.084,0,-154.896	1/1:60:0,60:0:0:60:2073:-186.838,-18.0618,0	1/1:108:0,108:0:0:108:3753:-337.963,-32.5112,0	1/1:197:1,196:1:36:196:6801:-608.589,-55.7046,0	1/1:164:0,163:0:0:163:5736:-515.997,-49.0679,0	1/1:56:1,55:1:36:55:1944:-171.638,-13.2594,0	1/1:67:0,67:0:0:67:2316:-208.704,-20.169,0	1/1:62:0,62:0:0:62:2200:-197.489,-18.6639,0	0/1:24:12,12:12:432:12:424:-31.2717,0,-31.9965	0/1:78:31,47:31:1094:47:1612:-121.885,0,-75.2875	1/1:160:0,160:0:0:160:5576:-501.973,-48.1648,0	1/1:204:1,203:1:36:203:7037:-629.766,-57.8118,0	1/1:215:0,215:0:0:215:7453:-670.842,-64.7215,0	1/1:174:2,172:2:72:172:6020:-535.078,-45.5425,0	1/1:153:4,149:4:144:149:5206:-455.377,-32.744,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:199:0,199:0:0:199:6949:-625.495,-59.905,0	1/1:257:1,256:1:36:256:8919:-799.123,-73.7664,0	1/1:272:0,272:0:0:272:9505:-855.437,-81.8802,0	1/1:87:0,87:0:0:87:3063:-275.902,-26.1896,0	1/1:98:0,97:0:0:97:3423:-307.928,-29.1999,0	0/1:87:34,53:34:1187:53:1854:-140.949,0,-80.9445	0/1:207:104,103:104:3720:103:3576:-259.74,0,-272.688	1/1:37:0,37:0:0:37:1273:-114.869,-11.1381,0	1/1:77:0,77:0:0:77:2649:-238.658,-23.1793,0	1/1:104:0,104:0:0:104:3578:-322.232,-31.3071,0	1/1:56:0,56:0:0:56:1972:-177.755,-16.8577,0	0/1:81:41,40:41:1464:40:1416:-103.354,0,-107.673	0/1:121:67,54:67:2395:54:1912:-135.933,0,-179.382	1/1:175:0,175:0:0:175:6049:-544.537,-52.6803,0	1/1:193:0,193:0:0:193:6768:-609.206,-58.0988,0
chr04	27327421	.	A	G	17324.6	PASS	AB=0.506317;ABP=3.72357;AC=42;AF=0.225806;AN=186;AO=1052;CIGAR=1X;DP=5184;DPB=5184;DPRA=0.940114;EPP=2287.4;EPPR=8973.36;GTI=1;LEN=1;MEANALT=1.02273;MQM=59.9354;MQMR=59.9734;NS=93;NUMALT=1;ODDS=0.746505;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37495;QR=147542;RO=4131;RPL=1052;RPP=2287.4;RPPR=8973.36;RPR=0;RUN=1;SAF=0;SAP=2287.4;SAR=1052;SRF=0;SRP=8973.36;SRR=4131;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:12,15:12:424:15:532:-40.0746,0,-30.3686	0/0:48:47,1:47:1669:1:36:0,-10.8512,-146.883	0/0:99:99,0:99:3531:0:0:0,-29.802,-317.93	0/0:138:138,0:138:4964:0:0:0,-41.5421,-446.893	0/1:77:40,37:40:1436:37:1314:-95.3814,0,-106.358	0/1:40:21,19:21:752:19:684:-49.8491,0,-55.9651	0/1:56:36,20:36:1288:20:716:-47.91,0,-99.3659	0/1:42:20,22:20:712:22:784:-58.2407,0,-51.7634	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.939	0/1:29:11,18:11:396:18:648:-49.922,0,-27.2529	0/0:92:92,0:92:3278:0:0:0,-27.6948,-295.24	0/0:79:78,1:78:2779:1:36:0,-20.1831,-246.746	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.937	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/1:26:13,13:13:464:13:459:-33.8173,0,-34.2707	0/1:173:79,94:79:2828:94:3342:-248.919,0,-202.681	0/1:86:43,43:43:1532:43:1536:-112.645,0,-112.285	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:36:16,20:16:576:20:716:-53.9145,0,-41.3379	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/1:109:56,53:56:1985:53:1896:-138.106,0,-146.11	0/1:142:76,66:76:2699:66:2356:-169.549,0,-200.403	0/1:32:14,18:14:500:18:626:-47.0298,0,-35.7032	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.788	0/1:70:41,29:41:1453:29:1031:-72.0305,0,-109.992	0/1:50:23,27:23:824:27:960:-71.6648,0,-59.4318	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:133:133,0:133:4771:0:0:0,-40.037,-429.545	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	.:.:.:.:.:.:.:.	0/1:94:32,61:32:1143:61:2160:-166.312,0,-74.8232	0/1:39:22,17:22:784:17:600:-42.589,0,-59.1437	0/1:53:32,21:32:1148:21:752:-52.0517,0,-87.6706	0/1:48:27,21:27:968:21:747:-53.1049,0,-72.9879	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.472	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:94:93,1:93:3327:1:36:0,-24.6985,-296.049	0/1:54:31,23:31:1103:23:824:-58.2277,0,-83.3242	0/1:64:39,25:39:1388:25:892:-61.3338,0,-105.953	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/1:25:16,9:16:572:9:320:-21.6166,0,-44.2877	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:63:24,39:24:860:39:1375:-105.083,0,-58.7569	0/1:15:6,9:6:212:9:320:-24.6269,0,-14.9093	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:4:0,4:0:0:4:144:-13.2995,-1.20412,0	0/1:43:17,26:17:612:26:932:-71.2546,0,-42.4691	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:82:35,47:35:1252:47:1676:-126.443,0,-88.3006	0/1:101:44,57:44:1576:57:2044:-153.827,0,-111.728	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:82:82,0:82:2867:0:0:0,-24.6845,-258.266	0/0:88:87,1:87:3100:1:36:0,-22.8924,-275.63	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.226	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:10:2,8:2:72:8:280:-22.529,0,-3.82642	0/1:46:29,17:29:1021:17:612:-41.5376,0,-78.3483	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:125:125,0:125:4447:0:0:0,-37.6287,-400.403	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.491	0/0:121:121,0:121:4297:0:0:0,-36.4246,-386.909	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.185	0/1:38:22,16:22:788:16:559:-39.1985,0,-59.8057	0/1:96:47,49:47:1679:49:1758:-129.605,0,-122.498	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:46:22,24:22:784:24:864:-64.2352,0,-57.0365	0/1:70:29,41:29:1036:41:1452:-109.903,0,-72.4818	0/0:86:86,0:86:3060:0:0:0,-25.8886,-275.631	0/0:116:116,0:116:4146:0:0:0,-34.9195,-373.323
chr04	27356245	.	G	A	11195.4	PASS	AB=0.443092;ABP=49.2271;AC=38;AF=0.202128;AN=188;AO=734;CIGAR=1X;DP=4264;DPB=4264;DPRA=1.06866;EPP=1596.87;EPPR=7668.31;GTI=2;LEN=1;MEANALT=1;MQM=59.9632;MQMR=59.9717;NS=94;NUMALT=1;ODDS=1.86013;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26019;QR=125940;RO=3530;RPL=0;RPP=1596.87;RPPR=7633.6;RPR=734;RUN=1;SAF=734;SAP=1596.87;SAR=0;SRF=3526;SRP=7633.6;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:11,5:11:392:5:180:-11.7356,0,-30.8036	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:26:24,2:24:852:2:72:0,-0.990057,-70.1637	0/1:40:21,19:21:752:19:676:-49.1268,0,-55.9651	0/1:36:16,20:16:557:20:693:-51.8525,0,-39.6185	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.294	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:37:19,18:19:676:18:640:-46.7912,0,-50.0275	0/0:100:100,0:100:3581:0:0:0,-30.103,-322.49	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:84:84,0:84:2993:0:0:0,-25.2865,-269.593	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.835	0/1:50:30,20:30:1080:20:716:-49.7162,0,-82.4618	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:48:32,16:32:1133:16:572:-37.364,0,-86.462	0/1:43:30,13:30:1065:13:468:-29.5154,0,-83.2155	0/1:95:56,39:56:2001:39:1388:-96.6186,0,-151.764	0/0:16:16,0:16:560:0:0:0,-4.81648,-50.7287	0/1:62:39,23:39:1385:23:820:-55.4587,0,-106.283	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:100:64,36:64:2300:36:1269:-84.4072,0,-177.153	0/1:62:28,34:28:996:34:1186:-88.3723,0,-71.291	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.027	0/1:67:48,19:48:1720:19:669:-40.3649,0,-134.916	0/1:52:33,19:33:1184:19:680:-45.8756,0,-91.2148	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:162:161,1:161:5704:1:36:0,-45.1686,-509.879	0/0:28:28,0:28:988:0:0:0,-8.42884,-89.2339	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:1:1,0:1:21:0:0:0,-0.30103,-2.09995	0/1:40:18,22:18:644:22:762:-56.8537,0,-46.2494	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	0/1:46:29,17:29:1040:17:578:-38.49,0,-80.067	0/1:40:22,18:22:769:18:610:-43.1745,0,-57.4874	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:48:23,25:23:801:25:885:-65.5171,0,-57.9573	0/1:32:17,15:17:589:15:525:-37.9451,0,-43.7003	0/0:42:42,0:42:1469:0:0:0,-12.6433,-132.502	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.202	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:22:16,6:16:576:6:212:-12.8021,0,-45.5523	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:36:19,17:19:680:17:608:-44.2149,0,-50.6921	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3053	0/0:89:89,0:89:3165:0:0:0,-26.7917,-285.074	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:73:37,36:37:1320:36:1288:-94.2484,0,-97.1268	0/1:72:41,31:41:1461:31:1108:-78.3568,0,-110.11	0/0:48:47,1:47:1684:1:36:0,-10.8512,-148.059	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:36:36,0:36:1265:0:0:0,-10.8371,-114.151	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:69:39,30:39:1381:30:1049:-73.9471,0,-103.816	0/0:48:48,0:48:1686:0:0:0,-14.4494,-152.022	0/0:102:102,0:102:3629:0:0:0,-30.7051,-326.815	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:48:47,1:47:1658:1:36:0,-10.8512,-145.905	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:94:93,1:93:3329:1:36:0,-24.6985,-296.228	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.471	0/1:39:24,15:24:860:15:540:-37.1964,0,-65.9817	0/1:129:54,75:54:1936:75:2676:-202.251,0,-135.684	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.462	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:95:52,43:52:1849:43:1532:-109.575,0,-138.09	0/1:37:7,30:7:248:30:1061:-84.6589,0,-11.5261	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951
chr04	27412316	.	C	G	145469	PASS	AB=0.499588;ABP=3.01567;AC=149;AF=0.792553;AN=188;AO=6768;CIGAR=1X;DP=8603;DPB=8603;DPRA=0;EPP=14699.5;EPPR=3985.49;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.5993;MQMR=59.928;NS=94;NUMALT=1;ODDS=4.90384;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242629;QR=65218;RO=1834;RPL=6768;RPP=14699.5;RPPR=3985.49;RPR=0;RUN=1;SAF=0;SAP=14699.5;SAR=6768;SRF=0;SRP=3985.49;SRR=1834;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:12,20:12:417:20:716:-55.1348,0,-28.2273	1/1:40:0,40:0:0:40:1440:-129.88,-12.0412,0	1/1:168:0,168:0:0:168:6023:-542.081,-50.573,0	1/1:230:0,230:0:0:230:8244:-741.84,-69.2369,0	0/1:15:13,2:13:459:2:72:-2.32127,0,-37.1253	0/1:37:17,20:17:593:20:716:-53.6263,0,-42.5566	0/1:56:24,32:24:864:32:1152:-87.1325,0,-61.2249	0/1:142:81,61:81:2897:61:2173:-153.071,0,-218.215	1/1:102:1,101:1:36:101:3628:-322.977,-27.1068,0	1/1:87:0,87:0:0:87:3098:-279.034,-26.1896,0	0/1:59:36,23:36:1296:23:828:-57.0657,0,-99.1828	1/1:87:0,87:0:0:87:3119:-280.86,-26.1896,0	1/1:70:0,70:0:0:70:2504:-225.481,-21.0721,0	1/1:64:0,64:0:0:64:2296:-206.855,-19.2659,0	1/1:78:0,78:0:0:78:2800:-252.187,-23.4803,0	0/1:82:45,37:45:1612:37:1332:-95.4604,0,-120.686	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:31:1,30:1:36:30:1071:-93.0857,-5.73366,0	0/1:33:16,17:16:576:17:597:-44.1221,0,-42.241	0/1:158:72,86:72:2573:86:3077:-229.388,0,-184.255	0/1:194:79,115:79:2814:115:4132:-313.525,0,-195.095	1/1:94:0,94:0:0:94:3372:-303.675,-28.2968,0	0/1:152:65,87:65:2310:87:3109:-234.258,0,-162.394	0/1:47:25,22:25:885:22:792:-57.4573,0,-65.8181	1/1:73:0,73:0:0:73:2628:-236.758,-21.9752,0	0/1:245:127,118:127:4469:118:4248:-308.582,0,-328.626	0/1:162:76,86:76:2721:86:3084:-228.986,0,-196.362	0/1:29:20,9:20:712:9:324:-20.776,0,-55.6768	1/1:240:0,240:0:0:240:8569:-771.137,-72.2472,0	0/1:108:67,41:67:2374:41:1461:-99.2444,0,-181.404	0/1:98:45,52:45:1601:52:1872:-139.184,0,-114.819	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	1/1:9:0,9:0:0:9:314:-28.5943,-2.70927,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:34:0,34:0:0:34:1224:-110.439,-10.235,0	1/1:161:0,161:0:0:161:5788:-520.982,-48.4658,0	1/1:171:0,171:0:0:171:6123:-551.124,-51.4761,0	1/1:55:0,55:0:0:55:1973:-177.769,-16.5567,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:140:71,69:71:2522:69:2480:-181.281,0,-185.085	0/1:35:21,14:21:741:14:504:-35.162,0,-56.4755	0/1:103:47,56:47:1669:56:2010:-150.114,0,-119.487	0/1:55:28,27:28:1008:27:942:-68.4882,0,-74.4797	1/1:48:0,48:0:0:48:1712:-154.34,-14.4494,0	1/1:87:0,87:0:0:87:3128:-281.73,-26.1896,0	1/1:89:0,89:0:0:89:3184:-286.766,-26.7917,0	0/1:189:86,103:86:3077:103:3682:-274.674,0,-220.262	0/1:72:26,46:26:936:46:1640:-126.071,0,-62.8853	1/1:172:1,171:1:36:171:6136:-548.577,-48.1789,0	1/1:107:0,107:0:0:107:3836:-345.422,-32.2102,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:129:0,129:0:0:129:4623:-416.048,-38.8329,0	0/1:109:61,48:61:2158:48:1724:-122.631,0,-161.671	1/1:15:0,15:0:0:15:540:-48.9342,-4.51545,0	0/1:235:133,102:133:4648:102:3656:-258.411,0,-347.737	0/1:39:25,14:25:885:14:504:-33.5854,0,-68.2264	0/1:11:8,3:8:273:3:108:-6.76384,0,-21.5889	0/1:10:7,3:7:237:3:108:-7.06487,0,-18.6247	0/1:99:43,56:43:1540:56:2016:-151.893,0,-109.091	1/1:107:0,107:0:0:107:3852:-346.854,-32.2102,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:186:91,95:91:3242:95:3420:-252.007,0,-235.998	0/1:203:95,108:95:3382:108:3884:-288.592,0,-243.466	1/1:60:0,60:0:0:60:2153:-194,-18.0618,0	1/1:105:0,105:0:0:105:3772:-339.657,-31.6082,0	1/1:211:6,205:6:216:205:7353:-641.503,-43.7268,0	1/1:202:4,198:4:144:198:7097:-624.946,-47.4944,0	1/1:46:0,46:0:0:46:1646:-148.421,-13.8474,0	1/1:44:0,44:0:0:44:1574:-141.898,-13.2453,0	1/1:35:0,35:0:0:35:1260:-113.696,-10.5361,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:120:54,66:54:1925:66:2355:-176.028,0,-137.371	1/1:79:0,79:0:0:79:2828:-254.691,-23.7814,0	1/1:151:0,151:0:0:151:5416:-487.495,-45.4555,0	1/1:189:0,189:0:0:189:6792:-611.05,-56.8947,0	1/1:40:0,40:0:0:40:1428:-128.806,-12.0412,0	1/1:103:0,103:0:0:103:3704:-333.53,-31.0061,0	0/1:9:4,5:4:129:5:180:-13.8428,0,-9.21839	1/1:120:0,120:0:0:120:4300:-385.687,-36.1236,0	1/1:138:0,138:0:0:138:4944:-444.556,-41.5421,0	1/1:163:0,163:0:0:163:5853:-526.835,-49.0679,0	1/1:39:0,39:0:0:39:1400:-126.192,-11.7402,0	1/1:91:0,91:0:0:91:3272:-293.771,-27.3937,0	0/1:48:20,28:20:716:28:1008:-76.5869,0,-50.3183	0/1:140:72,68:72:2584:68:2440:-177.672,0,-190.665	1/1:24:0,24:0:0:24:860:-77.7195,-7.22472,0	1/1:54:0,54:0:0:54:1931:-174.003,-16.2556,0	1/1:70:0,70:0:0:70:2516:-226.645,-21.0721,0	1/1:79:0,79:0:0:79:2831:-254.874,-23.7814,0	0/1:100:51,49:51:1821:49:1752:-127.752,0,-134.066	0/1:54:38,16:38:1364:16:559:-34.382,0,-106.805	1/1:191:1,190:1:36:190:6781:-606.654,-53.8985,0	1/1:93:0,93:0:0:93:3344:-300.934,-27.9958,0
chr04	27452906	.	A	G	111074	PASS	AB=0.496624;ABP=3.33289;AC=148;AF=0.787234;AN=188;AO=5190;CIGAR=1X;DP=6840;DPB=6840;DPRA=0;EPP=11013.9;EPPR=3482.35;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9717;MQMR=59.9793;NS=94;NUMALT=1;ODDS=4.94017;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185320;QR=58945;RO=1646;RPL=30;RPP=11013.9;RPPR=3482.35;RPR=5160;RUN=1;SAF=5190;SAP=11273;SAR=0;SRF=1646;SRP=3577.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:52:0,52:0:0:52:1846:-166.419,-15.6536,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:122:0,122:0:0:122:4337:-390.507,-36.7257,0	0/1:42:25,17:25:900:17:600:-41.6859,0,-68.6778	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:99:76,23:76:2724:23:820:-44.3205,0,-215.601	0/1:109:44,65:44:1584:65:2324:-176.608,0,-110.039	1/1:49:0,49:0:0:49:1760:-158.683,-14.7505,0	1/1:64:0,64:0:0:64:2276:-204.73,-19.2659,0	0/1:68:34,34:34:1216:34:1207:-88.4652,0,-89.2765	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:85:0,85:0:0:85:3051:-274.818,-25.5876,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	1/1:42:0,42:0:0:42:1485:-133.943,-12.6433,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:52:37,15:37:1332:15:539:-33.1926,0,-104.529	0/1:253:99,154:99:3552:154:5499:-418.877,0,-243.727	0/1:143:67,76:67:2404:76:2711:-201.165,0,-173.569	1/1:79:0,79:0:0:79:2808:-252.957,-23.7814,0	0/1:20:11,9:11:392:9:320:-23.1218,0,-29.5995	0/1:24:5,19:5:180:19:684:-54.6656,0,-9.32734	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:214:106,108:106:3804:108:3857:-282.127,0,-278.137	0/1:197:105,92:105:3749:92:3276:-235.756,0,-278.306	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:136:1,135:1:36:135:4826:-430.895,-37.3418,0	0/1:79:37,42:37:1313:42:1499:-111.422,0,-94.6883	0/1:91:49,42:49:1760:42:1504:-108.261,0,-131.29	0/1:70:32,38:32:1140:38:1358:-101.402,0,-81.8371	0/1:43:14,29:14:500:29:1036:-80.6096,0,-32.3919	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	1/1:141:0,141:0:0:141:5028:-452.668,-42.4452,0	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	1/1:113:0,113:0:0:113:4046:-364.327,-34.0164,0	1/1:101:0,101:0:0:101:3623:-326.274,-30.404,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:39:0,39:0:0:39:1392:-125.577,-11.7402,0	0/1:87:38,49:38:1353:49:1756:-132.134,0,-95.8788	0/1:45:20,25:20:720:25:900:-67.7747,0,-51.5824	0/1:92:54,38:54:1932:38:1360:-95.0058,0,-146.458	0/1:59:32,27:32:1148:27:972:-70.0371,0,-85.8691	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:125:0,125:0:0:125:4460:-401.565,-37.6288,0	0/1:141:68,73:68:2432:73:2608:-192.52,0,-176.69	0/1:86:53,33:53:1904:33:1188:-81.34,0,-145.749	1/1:81:0,81:0:0:81:2894:-260.696,-24.3834,0	1/1:51:0,51:0:0:51:1813:-163.45,-15.3525,0	1/1:98:1,97:1:36:97:3435:-305.766,-25.9027,0	1/1:85:0,85:0:0:85:3034:-273.291,-25.5876,0	0/1:27:15,12:15:525:12:428:-30.731,0,-39.4502	1/1:162:0,162:0:0:162:5746:-517.26,-48.7669,0	0/1:92:44,48:44:1580:48:1720:-127.391,0,-114.797	0/1:27:17,10:17:604:10:360:-24.6165,0,-46.5628	0/1:39:14,25:14:500:25:896:-69.2202,0,-33.596	0/1:81:12,69:12:424:69:2468:-197.991,0,-14.113	0/1:49:29,20:29:1036:20:720:-50.3783,0,-78.8034	1/1:81:0,81:0:0:81:2907:-261.865,-24.3834,0	1/1:60:0,60:0:0:60:2147:-193.497,-18.0618,0	0/1:170:85,85:85:3037:85:3043:-222.924,0,-222.355	0/1:143:73,70:73:2608:70:2511:-183.194,0,-191.921	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:70:1,69:1:36:69:2452:-217.334,-17.4738,0	1/1:77:0,77:0:0:77:2748:-247.563,-23.1793,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:85:0,84:0:0:84:2994:-269.332,-25.2865,0	0/1:62:24,38:24:860:38:1350:-103.136,0,-59.058	0/1:78:47,31:47:1676:31:1116:-77.2714,0,-127.646	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:65:0,64:0:0:64:2269:-204.2,-19.2659,0	1/1:102:0,102:0:0:102:3647:-328.434,-30.7051,0	1/1:67:0,66:0:0:66:2336:-210.138,-19.868,0	1/1:53:3,50:3:108:50:1800:-152.207,-5.87942,0	0/1:77:43,34:43:1540:34:1211:-86.102,0,-115.714	1/1:51:0,51:0:0:51:1811:-163.271,-15.3525,0	1/1:88:0,88:0:0:88:3141:-282.915,-26.4906,0	1/1:143:0,143:0:0:143:5093:-458.515,-43.0473,0	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	1/1:47:0,47:0:0:47:1662:-149.865,-14.1484,0	0/1:90:49,41:49:1760:41:1468:-105.323,0,-131.591	0/1:69:45,24:45:1616:24:851:-56.1384,0,-124.941	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:66:0,65:0:0:65:2321:-208.79,-19.567,0	0/1:84:32,52:32:1148:52:1860:-142.393,0,-78.3433	0/1:92:72,20:72:2588:20:711:-36.6209,0,-205.473	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0
chr04	27452909	.	A	G	29507.4	PASS	AB=0.502595;ABP=3.20192;AC=40;AF=0.212766;AN=188;AO=1655;CIGAR=1X;DP=6902;DPB=6902;DPRA=1.27603;EPP=3175.62;EPPR=9601.47;GTI=0;LEN=1;MEANALT=1.04348;MQM=59.9795;MQMR=59.9668;NS=94;NUMALT=1;ODDS=5.85805;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59076;QR=188070;RO=5245;RPL=50;RPP=3175.62;RPPR=9609.44;RPR=1605;RUN=1;SAF=1655;SAP=3596.8;SAR=0;SRF=5244;SRP=11383.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:127:127,0:127:4544:0:0:0,-38.2308,-409.127	0/1:40:16,24:16:576:24:847:-64.5075,0,-40.1338	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/1:101:23,78:23:824:78:2781:-220.127,0,-44.0793	0/1:113:68,45:68:2444:45:1607:-110.903,0,-186.198	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:73:36,37:36:1287:37:1324:-97.4869,0,-94.1576	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:22:11,11:11:381:11:396:-29.3601,0,-27.998	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/1:52:14,37:14:500:37:1327:-104.03,0,-29.6333	0/1:255:154,101:154:5517:101:3632:-250.321,0,-419.733	0/1:142:77,65:77:2764:65:2315:-165.864,0,-206.207	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.235	0/1:20:9,11:9:320:11:396:-29.9621,0,-23.1218	0/1:23:18,5:18:644:5:180:-9.62837,0,-51.3669	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:218:108,110:108:3876:110:3927:-287.998,0,-282.632	0/1:199:94,105:94:3376:105:3745:-277.345,0,-244.149	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:136:135,1:135:4848:1:36:0,-37.3418,-432.874	0/1:78:40,38:40:1440:38:1360:-99.2203,0,-106.417	0/1:90:42,48:42:1504:48:1702:-126.372,0,-108.562	0/1:72:38,34:38:1364:34:1210:-87.5318,0,-101.28	0/1:46:32,14:32:1148:14:504:-31.8507,0,-89.7825	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.691	0/0:143:143,0:143:5102:0:0:0,-43.0473,-459.321	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.143	0/0:116:116,0:116:4172:0:0:0,-34.9195,-375.66	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.658	0/1:87:48,39:48:1724:39:1400:-100.11,0,-129.256	0/1:44:25,19:25:900:19:680:-48.2838,0,-68.0757	0/1:90:37,53:37:1328:53:1889:-143.194,0,-92.7295	0/1:59:27,32:27:972:32:1152:-86.2294,0,-70.0371	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:128:128,0:128:4604:0:0:0,-38.5318,-414.448	0/1:142:73,69:73:2624:69:2460:-178.908,0,-193.657	0/1:88:34,54:34:1224:54:1914:-146.045,0,-83.9764	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:97:96,1:96:3433:1:36:0,-25.6016,-305.583	0/0:86:85,1:85:3037:1:30:0,-22.889,-270.559	0/1:29:12,17:12:432:17:604:-45.9607,0,-30.4913	0/0:162:162,0:162:5788:0:0:0,-48.7669,-521.036	0/1:91:50,41:50:1792:41:1458:-104.121,0,-134.169	0/1:27:10,17:10:360:17:603:-46.4717,0,-24.6165	0/1:39:25,14:25:900:14:500:-33.596,0,-69.5808	0/1:81:70,11:70:2493:11:396:-11.5993,0,-200.238	0/1:49:20,29:20:720:29:1032:-78.443,0,-50.3783	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:171:85,85:85:3060:85:3031:-221.457,0,-224.093	0/1:142:70,72:70:2520:72:2575:-189.253,0,-184.305	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:71:70,1:70:2501:1:36:0,-17.7749,-221.742	0/0:78:77,1:77:2753:1:36:0,-19.8821,-244.412	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:88:88,0:88:3129:0:0:0,-26.4906,-281.836	0/1:59:36,23:36:1296:23:809:-55.3675,0,-99.1832	0/1:78:30,48:30:1080:48:1711:-130.795,0,-74.0329	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.337	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.322	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:54:50,4:50:1792:4:144:0,-2.942,-148.249	0/1:76:34,42:34:1224:42:1491:-111.606,0,-87.5438	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:144:144,0:144:5176:0:0:0,-43.3483,-465.949	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:90:42,48:42:1508:48:1724:-128.353,0,-108.922	0/1:70:24,46:24:864:46:1638:-126.634,0,-57.0105	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/1:85:53,32:53:1888:32:1143:-77.5911,0,-144.611	0/1:93:21,72:21:756:72:2575:-204.002,0,-40.3714	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.454
chr04	27492809	.	CCTAC	TCTAT,TCTAC	143160	PASS	AB=0.578439,0.419331;ABP=146.767,155.059;AC=147,39;AF=0.790323,0.209677;AN=186;AO=5482,1132;CIGAR=1X3M1X,1X4M;DP=6625;DPB=6626;DPRA=0,1.01684;EPP=11907,2461.12;EPPR=5.18177;GTI=4;LEN=5,1;MEANALT=1.52688,2.12195;MQM=59.8535,59.9806;MQMR=60;NS=93;NUMALT=2;ODDS=1.14278;PAIRED=0,0;PAIREDR=0;PAO=2.5,0;PQA=88,0;PQR=0;PRO=0;QA=194394,40628;QR=36;RO=1;RPL=0,0;RPP=11907,2461.12;RPPR=5.18177;RPR=5482,1132;RUN=1,1;SAF=5482,1132;SAP=11907,2461.12;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:8:0,7,1:0:0:7,1:251,36:-23.7673,-3.29724,-1.19003,-20.8297,0,-20.5287	1/1:188:0,188,0:0:0:188,0:6690,0:-602.18,-56.5936,0,-602.18,-56.5936,-602.18	1/1:60:0,60,0:0:0:60,0:2126,0:-191.609,-18.0618,0,-191.609,-18.0618,-191.609	1/1:123:0,123,0:0:0:123,0:4364,0:-392.928,-37.0267,0,-392.928,-37.0267,-392.928	1/2:13:0,11,2:0:0:11,2:386,72:-37.6405,-6.23466,-2.92333,-31.7643,0,-31.1622	1/2:41:0,30,11:0:0:30,11:1064,396:-119.353,-32.6714,-23.6405,-87.0401,0,-83.7288	1/2:106:0,47,59:0:0:47,59:1651,2124:-307.883,-173.667,-159.519,-134.57,0,-116.809	1/2:85:0,61,24:0:0:61,24:2144,856:-244.646,-70.1364,-51.7736,-174.864,0,-167.64	1/1:100:0,100,0:0:0:100,0:3564,0:-320.965,-30.103,0,-320.965,-30.103,-320.965	1/1:94:0,94,0:0:0:94,0:3313,0:-298.391,-28.2968,0,-298.391,-28.2968,-298.391	1/2:40:0,26,13:0:0:26,13:929,468:-113.929,-38.1864,-30.3596,-75.7417,0,-71.8284	1/1:60:0,60,0:0:0:60,0:2129,0:-191.877,-18.0618,0,-191.877,-18.0618,-191.877	1/1:47:0,47,0:0:0:47,0:1674,0:-150.944,-14.1484,0,-150.944,-14.1484,-150.944	1/1:62:0,62,0:0:0:62,0:2192,0:-197.542,-18.6639,0,-197.542,-18.6639,-197.542	1/1:51:0,51,0:0:0:51,0:1814,0:-163.541,-15.3525,0,-163.541,-15.3525,-163.541	1/2:40:0,17,23:0:0:17,23:601,828:-116.862,-67.9204,-62.8029,-49.2973,0,-42.3736	1/1:50:0,50,0:0:0:50,0:1780,0:-160.483,-15.0515,0,-160.483,-15.0515,-160.483	1/1:50:0,50,0:0:0:50,0:1777,0:-160.206,-15.0515,0,-160.206,-15.0515,-160.206	1/2:29:0,10,19:0:0:10,19:360,684:-85.5449,-56.1708,-53.1605,-29.734,0,-24.0144	1/2:87:0,56,31:0:0:56,31:2004,1116:-254.837,-91.4198,-74.5621,-163.776,0,-154.444	1/2:102:0,59,43:0:0:59,43:2091,1548:-296.951,-126.61,-108.849,-170.64,0,-157.696	1/1:69:0,68,0:0:0:68,0:2421,0:-217.827,-20.47,0,-217.827,-20.47,-217.827	1/2:65:0,44,21:0:0:44,21:1558,752:-188.593,-61.6846,-48.4393,-127.265,0,-120.944	1/2:76:0,52,24:0:0:52,24:1831,864:-219.917,-70.8578,-55.2043,-149.416,0,-142.191	1/1:31:0,31,0:0:0:31,0:1101,0:-99.3997,-9.33193,0,-99.3997,-9.33193,-99.3997	1/2:231:0,145,86:0:0:145,86:5166,3084:-672.873,-251.897,-208.248,-421.334,0,-395.445	1/2:121:0,72,48:0:0:72,48:2537,1720:-346.846,-140.306,-118.631,-206.566,0,-192.116	1/2:34:0,12,22:0:0:12,22:426,784:-98.9714,-64.2613,-60.6489,-35.0654,0,-28.4428	1/1:145:0,145,0:0:0:145,0:5172,0:-465.537,-43.6494,0,-465.537,-43.6494,-465.537	1/2:126:0,112,14:0:0:112,14:3948,504:-362.865,-41.4278,-7.71243,-321.74,0,-317.526	1/2:102:0,59,43:0:0:59,43:2065,1536:-293.594,-125.589,-107.828,-168.359,0,-155.415	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:12:0,9,3:0:0:9,3:323,108:-35.5183,-9.17208,-6.46281,-26.7058,0,-25.8027	1/1:1:0,1,0:0:0:1,0:31,0:-3.09945,-0.30103,0,-3.09945,-0.30103,-3.09945	1/1:17:0,17,0:0:0:17,0:595,0:-53.8771,-5.11751,0,-53.8771,-5.11751,-53.8771	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:188:0,188,0:0:0:188,0:6707,0:-603.529,-56.5936,0,-603.529,-56.5936,-603.529	1/1:182:0,182,0:0:0:182,0:6402,0:-576.218,-54.7875,0,-576.218,-54.7875,-576.218	1/1:53:0,53,0:0:0:53,0:1885,0:-169.925,-15.9546,0,-169.925,-15.9546,-169.925	.:.:.:.:.:.:.:.	1/2:87:0,54,33:0:0:54,33:1926,1180:-253.575,-96.5741,-80.3184,-157.358,0,-147.424	1/2:32:0,13,19:0:0:13,19:468,684:-94.3572,-56.1708,-52.2574,-38.5463,0,-32.8267	1/2:39:0,29,10:0:0:29,10:1025,360:-113.207,-29.7336,-21.0037,-83.8312,0,-80.8209	1/2:57:0,31,26:0:0:31,26:1102,932:-166.173,-76.3721,-67.0401,-90.1581,0,-82.3314	1/1:54:0,54,0:0:0:54,0:1895,0:-170.802,-16.2556,0,-170.802,-16.2556,-170.802	1/1:61:0,61,0:0:0:61,0:2171,0:-195.654,-18.3628,0,-195.654,-18.3628,-195.654	1/1:103:0,103,0:0:0:103,0:3596,0:-323.011,-31.0061,0,-323.011,-31.0061,-323.011	1/2:159:0,91,68:0:0:91,68:3227,2432:-461.57,-198.665,-171.271,-263.261,0,-242.791	1/2:96:0,52,43:0:0:52,43:1845,1548:-276.697,-126.377,-110.724,-150.385,0,-137.441	1/1:125:0,124,0:0:0:124,0:4377,0:-393.779,-37.3277,0,-393.779,-37.3277,-393.779	1/1:80:0,80,0:0:0:80,0:2860,0:-257.639,-24.0824,0,-257.639,-24.0824,-257.639	1/1:9:0,9,0:0:0:9,0:313,0:-28.5057,-2.70927,0,-28.5057,-2.70927,-28.5057	1/1:81:0,81,0:0:0:81,0:2893,0:-260.449,-24.3834,0,-260.449,-24.3834,-260.449	1/2:17:0,7,10:0:0:7,10:244,360:-49.573,-29.734,-27.6268,-20.1921,0,-17.1818	1/1:25:0,25,0:0:0:25,0:886,0:-80.0578,-7.52575,0,-80.0578,-7.52575,-80.0578	1/2:60:0,36,24:0:0:36,24:1247,860:-171.835,-70.4971,-59.66,-101.691,0,-94.4667	1/2:25:0,19,6:0:0:19,6:668,216:-72.353,-17.9843,-12.2648,-54.7265,0,-52.9203	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5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chr04	27493020	.	G	A	88125	PASS	AB=0.381338;ABP=410.646;AC=141;AF=0.774725;AN=182;AO=5082;CIGAR=1X;DP=7176;DPB=7176;DPRA=13.2778;EPP=10882.6;EPPR=12.3826;GTI=6;LEN=1;MEANALT=1.03333;MQM=34.0401;MQMR=35.1167;NS=91;NUMALT=1;ODDS=0.365223;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180780;QR=74213;RO=2091;RPL=0;RPP=11038.4;RPPR=4414.21;RPR=5082;RUN=1;SAF=18;SAP=10882.6;SAR=5064;SRF=1013;SRP=7.3979;SRR=1078;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:33,21:33:1180:21:748:-44.9079,0,-72.304	1/1:41:2,39:2:72:39:1384:-104.768,-5.90579,0	1/1:86:1,85:1:36:85:3048:-240.144,-22.9858,0	1/1:133:0,133:0:0:133:4729:-376.506,-40.037,0	0/1:41:35,6:35:1248:6:216:-4.62496,0,-82.7301	0/1:35:20,15:20:712:15:532:-33.2082,0,-43.2533	0/1:79:65,13:65:2304:13:460:-13.1362,0,-157.874	0/1:116:80,36:80:2856:36:1272:-68.526,0,-187.852	1/1:36:0,36:0:0:36:1284:-104.024,-10.8371,0	1/1:46:0,46:0:0:46:1604:-127.911,-13.8474,0	0/1:112:56,56:56:2003:56:1991:-126.08,0,-131.263	1/1:102:0,102:0:0:102:3628:-291.127,-30.7051,0	1/1:85:0,85:0:0:85:3048:-243.869,-25.5876,0	1/1:110:0,110:0:0:110:3910:-311.634,-33.1133,0	1/1:86:0,86:0:0:86:3080:-242.85,-25.8886,0	0/1:130:83,47:83:2906:47:1642:-95.094,0,-199.448	1/1:47:2,45:2:72:45:1608:-123.883,-7.71197,0	1/1:41:3,38:3:108:38:1364:-101.268,-4.21449,0	0/1:47:27,20:27:972:20:716:-43.7044,0,-64.1275	0/1:145:74,71:74:2608:71:2515:-156.869,0,-168.882	0/1:123:62,61:62:2171:61:2192:-139.457,0,-138.474	1/1:39:1,38:1:36:38:1359:-104.243,-8.91909,0	0/1:73:50,23:50:1771:23:828:-42.6837,0,-116.798	0/1:60:43,17:43:1535:17:604:-30.1084,0,-98.964	1/1:110:0,110:0:0:110:3903:-316.055,-33.1133,0	0/1:163:95,68:95:3373:68:2432:-142.71,0,-212.635	0/1:249:151,98:151:5372:98:3496:-205.488,0,-354.284	0/1:52:33,19:33:1168:19:663:-39.024,0,-77.3553	1/1:219:2,217:2:72:217:7710:-606.191,-59.2069,0	0/1:91:54,37:54:1910:37:1311:-79.4542,0,-127.222	0/1:48:32,16:32:1139:16:572:-31.11,0,-74.7471	0/1:6:2,4:2:72:4:144:-9.30986,0,-3.78316	0/0:6:6,0:6:216:0:0:0,-1.80618,-17.1158	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:428:-35.181,-3.61236,0	1/1:181:0,181:0:0:181:6398:-506.977,-54.4864,0	1/1:59:1,58:1:36:58:2076:-163.479,-14.858,0	1/1:73:0,72:0:0:72:2568:-205.895,-21.6742,0	.:.:.:.:.:.:.:.	0/1:92:52,39:52:1860:39:1387:-83.2708,0,-119.882	0/1:62:47,15:47:1657:15:536:-25.2822,0,-117.053	0/1:96:69,27:69:2455:27:968:-48.0477,0,-163.721	0/1:103:64,39:64:2281:39:1374:-79.1067,0,-148.291	1/1:49:0,49:0:0:49:1731:-135.454,-14.7505,0	1/1:57:0,57:0:0:57:2018:-160.255,-17.1587,0	1/1:53:0,53:0:0:53:1896:-153.312,-15.9546,0	0/1:118:62,56:62:2206:56:1988:-123.069,0,-135.451	0/1:71:50,21:50:1766:21:752:-37.5201,0,-118.667	1/1:70:0,70:0:0:70:2504:-197.3,-21.0721,0	1/1:59:0,59:0:0:59:2104:-166.475,-17.7608,0	1/1:11:0,11:0:0:11:387:-31.3613,-3.31133,0	1/1:83:0,83:0:0:83:2972:-238.976,-24.9855,0	0/1:57:36,21:36:1284:21:744:-41.9546,0,-86.4259	1/1:3:0,3:0:0:3:108:-9.08924,-0.90309,0	0/1:93:58,35:58:2035:35:1256:-73.8041,0,-132.955	0/1:24:16,8:16:556:8:284:-15.8625,0,-35.3667	0/1:8:1,7:1:36:7:252:-17.0742,0,-0.412841	0/1:14:6,8:6:216:8:280:-17.934,0,-11.4513	0/1:79:31,48:31:1095:48:1684:-110.574,0,-62.8497	1/1:114:3,111:3:108:111:3941:-301.77,-25.0698,0	1/1:6:0,6:0:0:6:216:-17.4733,-1.80618,0	0/1:92:62,30:62:2202:30:1048:-55.6696,0,-144.906	0/1:171:94,77:94:3304:77:2732:-165.398,0,-215.099	1/1:68:0,68:0:0:68:2399:-195.066,-20.47,0	1/1:51:2,49:2:72:49:1756:-134.25,-9.83728,0	1/1:103:0,103:0:0:103:3676:-291.985,-31.0061,0	1/1:106:2,104:2:72:104:3691:-287.499,-25.2541,0	1/1:95:0,95:0:0:95:3351:-272.938,-28.5979,0	1/1:54:0,54:0:0:54:1940:-157.504,-16.2556,0	1/1:78:0,78:0:0:78:2753:-218.803,-23.4803,0	0/1:20:10,10:10:347:10:356:-22.4268,0,-22.6144	0/1:76:43,33:43:1548:33:1184:-72.6722,0,-96.9075	1/1:65:0,65:0:0:65:2312:-187.949,-19.567,0	1/1:64:0,64:0:0:64:2284:-185.428,-19.2659,0	1/1:108:0,108:0:0:108:3872:-308.035,-32.5112,0	1/1:93:0,93:0:0:93:3308:-267.408,-27.9958,0	1/1:67:1,66:1:36:66:2352:-186.897,-17.2662,0	0/1:10:7,3:7:248:3:100:-5.66361,0,-15.3688	1/1:74:0,74:0:0:74:2648:-213.973,-22.2762,0	1/1:90:4,86:4:140:86:3076:-234.817,-14.8221,0	1/1:81:0,81:0:0:81:2892:-228.937,-24.3834,0	1/1:78:0,78:0:0:78:2787:-220.22,-23.4803,0	1/1:109:0,109:0:0:109:3874:-308.314,-32.8123,0	0/1:90:64,26:64:2283:26:908:-46.1216,0,-153.934	0/1:172:121,51:121:4331:51:1815:-92.7592,0,-294.92	1/1:16:0,16:0:0:16:572:-45.9911,-4.81648,0	1/1:78:0,78:0:0:78:2784:-223.075,-23.4803,0	1/1:74:0,74:0:0:74:2636:-213.075,-22.2762,0	1/1:118:0,118:0:0:118:4193:-337.024,-35.5215,0	0/1:173:98,75:98:3486:75:2659:-158.266,0,-234.07	0/1:88:74,14:74:2605:14:495:-12.9078,0,-180.771	1/1:58:1,57:1:36:57:2011:-156.14,-13.957,0	1/1:98:0,98:0:0:98:3471:-277.058,-29.5009,0
chr04	27542824	.	T	C	17385.4	PASS	AB=0.570545;ABP=79.9102;AC=40;AF=0.215054;AN=186;AO=1018;CIGAR=1X;DP=4252;DPB=4252;DPRA=1.00929;EPP=2213.57;EPPR=7025.55;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9879;NS=93;NUMALT=1;ODDS=1.17152;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36146;QR=112496;RO=3234;RPL=0;RPP=2213.57;RPPR=7025.55;RPR=1018;RUN=1;SAF=0;SAP=2213.57;SAR=1018;SRF=0;SRP=7025.55;SRR=3234;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:48:48,0:48:1675:0:0:0,-14.4494,-151.036	0/0:21:21,0:21:676:0:0:0,-6.32163,-61.1419	0/0:144:144,0:144:5030:0:0:0,-43.3483,-452.86	0/1:19:5,14:5:161:14:504:-39.9785,0,-9.08699	0/1:39:9,30:9:316:30:1058:-83.7894,0,-17.0387	0/1:61:22,39:22:752:39:1388:-106.856,0,-49.6313	0/1:44:18,26:18:624:26:919:-69.7808,0,-43.2389	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/0:30:30,0:30:1034:0:0:0,-9.0309,-93.3672	0/1:33:20,13:20:694:13:464:-32.1635,0,-52.8464	0/0:60:58,2:58:2003:2:72:0,-11.2251,-173.705	0/0:49:49,0:49:1723:0:0:0,-14.7505,-155.354	0/0:44:44,0:44:1539:0:0:0,-13.2453,-138.801	0/0:40:40,0:40:1381:0:0:0,-12.0412,-124.585	0/1:33:18,15:18:623:15:527:-37.8262,0,-46.4591	0/0:63:63,0:63:2198:0:0:0,-18.9649,-198.086	0/0:54:54,0:54:1889:0:0:0,-16.2556,-170.286	0/1:23:9,14:9:312:14:491:-37.5974,0,-21.4917	0/1:63:31,32:31:1072:32:1145:-84.3948,0,-77.8229	0/1:56:26,30:26:919:30:1076:-80.2952,0,-66.1685	0/0:68:68,0:68:2378:0:0:0,-20.47,-214.279	0/1:18:9,9:9:316:9:324:-24.0873,0,-23.3603	0/1:59:11,48:11:396:48:1707:-136.154,0,-18.222	0/0:18:18,0:18:609:0:0:0,-5.41854,-55.1271	0/1:177:78,99:78:2717:99:3533:-264.896,0,-191.494	0/1:81:39,42:39:1375:42:1504:-111.271,0,-99.6645	0/1:17:11,6:11:384:6:212:-14.3073,0,-29.7772	0/0:90:90,0:90:3152:0:0:0,-27.0927,-283.911	0/1:54:23,31:23:802:31:1104:-83.415,0,-56.2418	0/1:72:33,39:33:1168:39:1358:-100.84,0,-83.7531	.:.:.:.:.:.:.:.	0/1:11:7,4:7:236:4:144:-10.0023,0,-18.2586	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:132:132,0:132:4540:0:0:0,-39.736,-408.782	0/0:65:65,0:65:2270:0:0:0,-19.5669,-204.563	0/0:46:46,0:46:1597:0:0:0,-13.8474,-144.017	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:67:28,39:28:984:39:1383:-104.599,0,-68.7044	0/1:39:15,24:15:524:24:855:-65.53,0,-35.7495	0/1:27:8,19:8:263:19:674:-52.8587,0,-15.8635	0/1:45:21,24:21:709:24:838:-62.19,0,-50.5773	0/0:37:37,0:37:1269:0:0:0,-11.1381,-114.508	0/0:32:32,0:32:1132:0:0:0,-9.63296,-102.189	0/0:37:37,0:37:1277:0:0:0,-11.1381,-115.228	0/1:62:25,37:25:872:37:1294:-98.0957,0,-60.1292	0/1:30:11,19:11:379:19:680:-52.4983,0,-25.4097	0/0:70:70,0:70:2450:0:0:0,-21.0721,-220.756	0/0:69:69,0:69:2398:0:0:0,-20.7711,-216.075	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:61:61,0:61:2095:0:0:0,-18.3628,-188.818	0/1:15:8,7:8:280:7:252:-18.5135,0,-21.0239	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:54:18,36:18:632:36:1260:-97.444,0,-40.9511	0/1:28:7,21:7:252:21:747:-59.1255,0,-14.6001	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:27:13,14:13:464:14:504:-37.5703,0,-33.9697	0/0:91:90,1:90:3170:1:36:0,-23.7955,-281.929	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:116:58,58:58:2035:58:2088:-153.27,0,-148.503	0/1:78:42,36:42:1471:36:1251:-89.4081,0,-109.203	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:44:44,0:44:1497:0:0:0,-13.2453,-135.02	0/0:84:84,0:84:2908:0:0:0,-25.2865,-261.96	0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.926	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/0:29:29,0:29:993:0:0:0,-8.72987,-89.6769	0/0:55:55,0:55:1907:0:0:0,-16.5566,-171.905	0/1:9:2,7:2:68:7:248:-19.9549,0,-3.74844	0/1:39:15,24:15:515:24:855:-65.53,0,-34.9348	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/0:39:39,0:39:1358:0:0:0,-11.7402,-122.517	0/0:43:43,0:43:1461:0:0:0,-12.9443,-131.781	0/0:88:88,0:88:3080:0:0:0,-26.4906,-277.431	0/0:52:52,0:52:1788:0:0:0,-15.6536,-161.2	0/1:9:7,2:7:240:2:72:-4.12745,0,-19.2254	0/0:43:43,0:43:1510:0:0:0,-12.9443,-136.192	0/0:48:48,0:48:1664:0:0:0,-14.4494,-150.044	0/0:60:60,0:60:2111:0:0:0,-18.0618,-190.259	0/0:86:86,0:86:3036:0:0:0,-25.8886,-273.47	0/0:39:39,0:39:1344:0:0:0,-11.7402,-121.255	0/1:42:15,27:15:523:27:944:-72.6281,0,-34.7552	0/1:98:47,51:47:1632:51:1806:-133.319,0,-117.664	0/0:33:33,0:33:1164:0:0:0,-9.93399,-105.067	0/0:65:65,0:65:2269:0:0:0,-19.5669,-204.472	0/0:56:56,0:56:1920:0:0:0,-16.8577,-173.075	0/0:24:24,0:24:822:0:0:0,-7.22472,-74.2934	0/1:57:28,29:28:958:29:1033:-76.1237,0,-69.37	0/1:50:19,31:19:667:31:1112:-85.3398,0,-45.3031	0/0:43:43,0:43:1495:0:0:0,-12.9443,-134.842	0/0:58:58,0:58:2020:0:0:0,-17.4597,-181.843
chr04	27555543	.	G	T	199774	PASS	AB=0.528897;ABP=36.1414;AC=147;AF=0.781915;AN=188;AO=9274;CIGAR=1X;DP=11441;DPB=11441;DPRA=0;EPP=19898.8;EPPR=4630.68;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.922;MQMR=59.9482;NS=94;NUMALT=1;ODDS=0.593756;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329478;QR=77264;RO=2163;RPL=9246;RPP=19898.8;RPPR=4630.68;RPR=28;RUN=1;SAF=9274;SAP=20141.2;SAR=0;SRF=2163;SRP=4699.91;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:9,8:9:324:8:288:-20.5152,0,-24.3883	1/1:79:1,78:1:36:78:2770:-245.935,-20.1831,0	1/1:111:0,111:0:0:111:3960:-356.584,-33.4143,0	1/1:264:0,264:0:0:264:9352:-841.48,-79.4719,0	0/1:57:22,35:22:788:35:1260:-96.5468,0,-54.0861	0/1:57:27,30:27:964:30:1057:-78.2819,0,-69.9181	0/1:188:68,120:68:2436:120:4280:-328.612,0,-162.899	0/1:205:95,110:95:3396:110:3879:-287.592,0,-244.144	1/1:121:0,121:0:0:121:4291:-386.355,-36.4246,0	1/1:95:0,95:0:0:95:3412:-307.292,-28.5979,0	0/1:78:39,39:39:1404:39:1379:-100.928,0,-103.179	1/1:86:0,86:0:0:86:3060:-275.628,-25.8886,0	1/1:117:0,117:0:0:117:4168:-375.303,-35.2205,0	1/1:108:0,108:0:0:108:3847:-346.427,-32.5112,0	1/1:89:0,89:0:0:89:3170:-285.524,-26.7917,0	0/1:67:33,34:33:1173:34:1193:-87.5042,0,-85.7065	1/1:88:0,88:0:0:88:3107:-279.856,-26.4906,0	1/1:110:0,110:0:0:110:3951:-355.78,-33.1133,0	0/1:48:28,20:28:977:20:703:-49.1441,0,-73.7909	0/1:228:63,165:63:2256:165:5816:-454.924,0,-134.668	0/1:176:80,96:80:2864:96:3405:-253.682,0,-205.016	1/1:128:0,128:0:0:128:4555:-410.116,-38.5318,0	0/1:63:32,31:32:1144:31:1096:-79.9808,0,-84.3046	0/1:51:26,25:26:928:25:900:-65.9685,0,-68.4857	1/1:69:0,69:0:0:69:2441:-219.942,-20.7711,0	0/1:362:167,195:167:5962:195:6933:-515.066,0,-427.659	0/1:189:89,100:89:3192:100:3576:-265.149,0,-230.608	0/1:54:17,37:17:608:37:1324:-103.206,0,-38.7964	1/1:430:1,429:1:36:429:15268:-1370.24,-125.845,0	0/1:158:83,75:83:2984:75:2638:-190.08,0,-221.229	0/1:122:54,68:54:1928:68:2407:-179.931,0,-137.071	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:25:21,4:21:756:4:144:-5.78787,0,-60.8415	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:245:1,244:1:36:244:8614:-771.655,-70.1541,0	1/1:265:3,262:3:108:262:9350:-831.374,-69.6978,0	1/1:84:0,84:0:0:84:2926:-263.574,-25.2865,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:154:75,79:75:2671:79:2828:-208.4,0,-194.277	0/1:59:31,28:31:1094:28:1000:-72.5546,0,-81.0075	0/1:179:92,87:92:3296:87:3081:-223.634,0,-242.785	0/1:88:51,37:51:1836:37:1308:-91.529,0,-139.03	1/1:68:0,68:0:0:68:2389:-215.255,-20.47,0	1/1:160:0,160:0:0:160:5726:-515.457,-48.1648,0	1/1:190:0,190:0:0:190:6751:-607.67,-57.1957,0	0/1:181:92,89:92:3292:89:3118:-226.33,0,-242.013	0/1:107:54,53:54:1944:53:1900:-139.068,0,-143.025	1/1:211:0,211:0:0:211:7524:-677.199,-63.5173,0	1/1:183:0,183:0:0:183:6540:-588.684,-55.0885,0	1/1:17:0,17:0:0:17:612:-55.4111,-5.11751,0	1/1:149:0,149:0:0:149:5336:-480.371,-44.8535,0	0/1:67:30,37:30:1058:37:1299:-97.0392,0,-75.36	1/1:43:0,43:0:0:43:1528:-137.813,-12.9443,0	0/1:148:51,97:51:1819:97:3432:-264.542,0,-119.438	0/1:45:18,27:18:648:27:960:-73.1676,0,-45.1055	0/1:16:8,8:8:284:8:284:-21.0869,0,-21.0869	0/1:55:22,33:22:779:33:1168:-88.8706,0,-53.8754	0/1:76:47,29:47:1680:29:1044:-71.3965,0,-128.609	1/1:169:1,168:1:32:168:5954:-532.752,-47.6748,0	1/1:13:0,13:0:0:13:449:-40.7375,-3.91339,0	0/1:233:101,132:101:3620:132:4705:-353.47,0,-255.861	0/1:230:109,121:109:3872:121:4273:-315.512,0,-279.438	1/1:87:0,87:0:0:87:3052:-274.906,-26.1896,0	1/1:130:0,130:0:0:130:4555:-410.122,-39.1339,0	1/1:233:2,229:2:72:229:8087:-720.858,-63.061,0	1/1:123:1,122:1:36:122:4352:-388.256,-33.4284,0	1/1:30:0,30:0:0:30:1053:-95.0786,-9.0309,0	1/1:90:0,90:0:0:90:3216:-289.663,-27.0927,0	1/1:109:1,107:1:36:107:3781:-336.759,-29.4094,0	0/1:24:13,11:13:464:11:388:-28.0326,0,-34.8728	0/1:134:73,61:73:2612:61:2163:-154.599,0,-194.789	1/1:70:0,70:0:0:70:2494:-224.713,-21.0721,0	1/1:191:0,191:0:0:191:6828:-614.564,-57.4967,0	1/1:281:0,281:0:0:281:10047:-904.161,-84.5894,0	1/1:143:0,143:0:0:143:5066:-456.066,-43.0473,0	1/1:130:0,130:0:0:130:4622:-416.146,-39.1339,0	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	1/1:176:0,176:0:0:176:6251:-562.687,-52.9813,0	1/1:182:0,182:0:0:182:6445:-580.142,-54.7875,0	1/1:322:0,321:0:0:321:11443:-1028.71,-96.6306,0	1/1:137:0,137:0:0:137:4829:-434.766,-41.2411,0	1/1:89:0,89:0:0:89:3162:-284.805,-26.7917,0	0/1:120:69,51:69:2476:51:1788:-125.076,0,-186.97	0/1:220:110,110:110:3921:110:3934:-287.98,0,-286.856	1/1:58:0,58:0:0:58:2065:-186.119,-17.4597,0	1/1:112:0,112:0:0:112:3970:-357.478,-33.7154,0	1/1:95:0,95:0:0:95:3362:-302.796,-28.5979,0	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:170:89,81:89:3143:81:2892:-209.306,0,-231.92	0/1:77:52,25:52:1847:25:900:-58.1417,0,-143.33	1/1:161:0,161:0:0:161:5699:-512.947,-48.4658,0	1/1:129:0,129:0:0:129:4597:-413.763,-38.8329,0
chr04	27555558	.	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chr04	27555638	.	T	A	214578	PASS	AB=0.553604;ABP=128.022;AC=147;AF=0.781915;AN=188;AO=9924;CIGAR=1X;DP=12167;DPB=12167;DPRA=0;EPP=21474.6;EPPR=4823.78;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9883;MQMR=59.9915;NS=94;NUMALT=1;ODDS=2.21747;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=355004;QR=79774;RO=2240;RPL=9915;RPP=21474.6;RPPR=4832.43;RPR=9;RUN=1;SAF=0;SAP=21552.7;SAR=9924;SRF=1;SRP=4858.43;SRR=2239;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:28,37:28:1000:37:1319:-99.445,0,-70.7484	1/1:166:0,166:0:0:166:5936:-534.349,-49.971,0	1/1:138:0,138:0:0:138:4931:-443.94,-41.5421,0	1/1:296:0,296:0:0:296:10606:-954.435,-89.1049,0	0/1:73:23,50:23:809:50:1800:-140.307,0,-51.1531	0/1:61:29,32:29:1029:32:1144:-84.9067,0,-74.5583	0/1:131:64,67:64:2292:67:2400:-176.822,0,-167.106	0/1:211:74,137:74:2644:137:4891:-376.826,0,-174.69	1/1:97:0,97:0:0:97:3457:-311.342,-29.1999,0	1/1:136:0,136:0:0:136:4849:-436.563,-40.9401,0	0/1:93:48,45:48:1708:45:1593:-115.662,0,-126.01	1/1:82:0,82:0:0:82:2906:-261.775,-24.6845,0	1/1:134:0,134:0:0:134:4800:-432.156,-40.338,0	1/1:147:0,147:0:0:147:5264:-473.896,-44.2514,0	1/1:110:0,110:0:0:110:3951:-355.78,-33.1133,0	0/1:83:36,47:36:1279:47:1688:-127.221,0,-90.427	1/1:105:0,105:0:0:105:3764:-338.959,-31.6082,0	1/1:114:0,114:0:0:114:4096:-368.824,-34.3174,0	0/1:74:24,50:24:860:50:1792:-139.286,0,-55.4456	0/1:240:100,140:100:3537:140:4990:-377,0,-246.291	0/1:176:67,109:67:2396:109:3872:-295.695,0,-162.916	1/1:134:0,134:0:0:134:4789:-431.165,-40.338,0	0/1:131:62,69:62:2190:69:2464:-182.58,0,-157.928	0/1:147:71,76:71:2552:76:2719:-200.702,0,-185.679	1/1:73:0,73:0:0:73:2589:-233.256,-21.9752,0	0/1:368:152,215:152:5417:215:7682:-580.576,0,-376.823	0/1:224:97,127:97:3450:127:4537:-341.065,0,-243.28	0/1:49:27,22:27:963:22:788:-56.4943,0,-72.2355	1/1:360:0,360:0:0:360:12871:-1158.21,-108.371,0	0/1:151:56,95:56:1985:95:3412:-261.838,0,-133.467	0/1:166:83,83:83:2936:83:2980:-218.461,0,-214.503	0/1:15:12,3:12:417:3:108:-5.55972,0,-33.3448	0/1:28:9,19:9:324:19:684:-53.4615,0,-21.077	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:260:1,259:1:36:259:9279:-831.477,-74.6695,0	1/1:302:0,302:0:0:302:10833:-974.868,-90.9111,0	1/1:130:0,130:0:0:130:4647:-418.392,-39.1339,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:145:72,73:72:2573:73:2611:-191.589,0,-188.168	0/1:78:40,38:40:1413:38:1364:-99.5804,0,-103.985	0/1:150:77,73:77:2729:73:2605:-189.542,0,-200.652	0/1:122:62,60:62:2208:60:2147:-156.772,0,-162.26	1/1:86:0,86:0:0:86:3069:-276.438,-25.8886,0	1/1:171:0,171:0:0:171:6108:-549.82,-51.4761,0	1/1:148:0,148:0:0:148:5278:-475.1,-44.5524,0	0/1:215:65,150:65:2316:150:5352:-416.774,0,-143.979	0/1:122:63,59:63:2241:59:2092:-151.821,0,-165.226	1/1:153:0,153:0:0:153:5475:-492.877,-46.0576,0	1/1:212:0,212:0:0:212:7607:-684.665,-63.8184,0	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	1/1:152:1,151:1:32:151:5411:-483.92,-42.5572,0	0/1:76:39,37:39:1396:37:1307:-95.0525,0,-103.061	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:125:52,73:52:1834:73:2611:-197.609,0,-127.708	0/1:81:36,45:36:1261:45:1612:-120.987,0,-89.407	0/1:11:4,7:4:144:7:237:-18.3477,0,-10.0023	0/1:18:5,13:5:180:13:464:-36.679,0,-11.1335	0/1:133:71,62:71:2521:62:2199:-158.135,0,-187.104	1/1:167:0,167:0:0:167:6004:-540.462,-50.272,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:248:105,143:105:3733:143:5096:-384.128,0,-261.516	0/1:227:109,118:109:3916:118:4209:-310.626,0,-284.298	1/1:77:0,77:0:0:77:2744:-247.203,-23.1793,0	1/1:91:0,90:0:0:90:3228:-290.382,-27.0927,0	1/1:249:0,249:0:0:249:8940:-804.578,-74.9565,0	1/1:225:1,224:1:32:224:7999:-716.732,-64.5324,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:108:0,108:0:0:108:3884:-349.753,-32.5112,0	1/1:124:0,124:0:0:124:4444:-400.13,-37.3277,0	0/1:34:24,10:24:844:10:360:-22.5093,0,-66.0439	0/1:131:43,87:43:1540:87:3102:-239.913,0,-99.3994	1/1:80:0,80:0:0:80:2819:-253.946,-24.0824,0	1/1:269:0,269:0:0:269:9638:-867.37,-80.9771,0	1/1:181:0,181:0:0:181:6496:-584.722,-54.4864,0	1/1:144:0,144:0:0:144:5136:-462.381,-43.3483,0	1/1:90:3,87:3:108:87:3111:-270.141,-17.0175,0	0/1:21:4,17:4:144:17:612:-49.0918,0,-6.99199	1/1:111:0,111:0:0:111:3984:-358.749,-33.4143,0	1/1:182:0,182:0:0:182:6497:-584.815,-54.7875,0	1/1:322:0,322:0:0:322:11532:-1037.75,-96.9317,0	1/1:143:0,143:0:0:143:5126:-461.481,-43.0473,0	1/1:129:0,129:0:0:129:4632:-417.041,-38.8329,0	0/1:123:59,64:59:2116:64:2271:-167.626,0,-153.682	0/1:198:94,104:94:3376:104:3732:-276.476,0,-244.451	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:127:0,127:0:0:127:4554:-410.025,-38.2308,0	1/1:97:0,97:0:0:97:3479:-313.32,-29.1999,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	0/1:146:70,76:70:2508:76:2720:-201.093,0,-182.022	0/1:109:73,36:73:2605:36:1292:-83.7715,0,-201.884	1/1:106:0,106:0:0:106:3796:-341.838,-31.9092,0	1/1:155:0,155:0:0:155:5564:-500.882,-46.6597,0
chr04	27604296	.	A	G	206639	PASS	AB=0.498498;ABP=3.11467;AC=148;AF=0.787234;AN=188;AO=9741;CIGAR=1X;DP=12430;DPB=12430;DPRA=0;EPP=21146.6;EPPR=5818.23;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9857;MQMR=59.9996;NS=94;NUMALT=1;ODDS=3.45436;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=346125;QR=96213;RO=2686;RPL=9741;RPP=21155.3;RPPR=5809.56;RPR=0;RUN=1;SAF=9740;SAP=21146.6;SAR=1;SRF=2685;SRP=5826.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:101:42,59:42:1500:59:2090:-157.965,0,-104.891	1/1:96:0,96:0:0:96:3414:-307.475,-28.8989,0	1/1:230:0,230:0:0:230:8157:-734.152,-69.2369,0	1/1:312:0,312:0:0:312:11095:-998.449,-93.9214,0	0/1:120:65,55:65:2336:55:1968:-141.271,0,-174.376	0/1:84:37,46:37:1328:46:1634:-122.002,0,-94.4769	0/1:117:68,49:68:2440:49:1747:-122.293,0,-184.634	0/1:224:124,100:124:4423:100:3567:-253.808,0,-330.812	1/1:160:3,157:3:108:157:5609:-494.856,-38.0896,0	1/1:67:0,67:0:0:67:2369:-213.467,-20.169,0	0/1:41:21,20:21:756:20:712:-52.0644,0,-56.025	1/1:104:0,104:0:0:104:3663:-329.876,-31.3071,0	1/1:96:0,96:0:0:96:3347:-301.448,-28.8989,0	1/1:110:0,110:0:0:110:3868:-348.316,-33.1133,0	1/1:70:0,70:0:0:70:2443:-220.122,-21.0721,0	0/1:62:42,20:42:1508:20:708:-45.3817,0,-117.351	1/1:40:0,40:0:0:40:1422:-128.276,-12.0412,0	1/1:44:0,44:0:0:44:1534:-138.35,-13.2453,0	0/1:28:13,15:13:464:15:536:-40.146,0,-33.6687	0/1:229:120,109:120:4304:109:3872:-279.739,0,-318.6	0/1:201:107,94:107:3828:94:3310:-237.611,0,-284.21	1/1:283:0,283:0:0:283:10032:-902.824,-85.1915,0	0/1:304:159,145:159:5712:145:5168:-373.747,0,-422.682	0/1:102:54,48:54:1923:48:1693:-121.949,0,-142.641	1/1:117:0,117:0:0:117:4159:-374.493,-35.2205,0	0/1:429:214,214:214:7692:214:7601:-554.93,0,-563.109	0/1:187:88,99:88:3143:99:3540:-262.517,0,-226.803	0/1:26:8,18:8:288:18:644:-50.4638,0,-18.4406	1/1:411:1,410:1:36:410:14579:-1308.26,-120.125,0	0/1:303:157,146:157:5607:146:5189:-375.94,0,-413.54	0/1:185:100,85:100:3583:85:3043:-218.409,0,-266.986	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	1/1:171:0,171:0:0:171:6083:-547.576,-51.4761,0	1/1:261:0,261:0:0:261:9299:-836.879,-78.5688,0	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:238:119,119:119:4272:119:4198:-306.356,0,-313.012	0/1:14:6,8:6:216:8:273:-20.6858,0,-15.5761	0/1:258:123,135:123:4420:135:4828:-357.01,0,-320.304	0/1:51:21,30:21:739:30:1054:-79.8167,0,-51.4798	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:183:0,183:0:0:183:6528:-587.601,-55.0885,0	1/1:173:0,173:0:0:173:6147:-553.329,-52.0782,0	0/1:392:211,181:211:7580:181:6438:-461.504,0,-564.231	0/1:140:77,63:77:2756:63:2248:-160.439,0,-206.138	1/1:169:1,168:1:36:168:5995:-536.058,-47.2758,0	1/1:153:0,153:0:0:153:5456:-491.113,-46.0576,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:182:0,182:0:0:182:6476:-582.928,-54.7875,0	0/1:135:60,75:60:2148:75:2670:-199.906,0,-152.948	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:197:2,195:2:68:195:6947:-618.84,-52.8452,0	0/1:96:51,45:51:1806:45:1608:-116.111,0,-133.921	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:131:56,75:56:2004:75:2679:-201.92,0,-141.199	1/1:94:0,94:0:0:94:3326:-299.56,-28.2968,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:219:92,127:92:3287:127:4498:-338.933,0,-230.124	0/1:306:152,154:152:5452:154:5499:-402.92,0,-398.692	1/1:84:0,84:0:0:84:3003:-270.501,-25.2865,0	1/1:126:0,126:0:0:126:4461:-401.662,-37.9298,0	1/1:293:1,292:1:36:292:10397:-932.057,-84.6035,0	1/1:409:5,403:5:180:403:14319:-1271.92,-106.628,0	1/1:26:0,26:0:0:26:906:-81.8535,-7.82678,0	1/1:84:0,84:0:0:84:2983:-268.701,-25.2865,0	1/1:61:0,61:0:0:61:2136:-192.496,-18.3628,0	0/1:45:26,19:26:932:19:676:-47.6216,0,-70.6525	0/1:234:97,137:97:3463:137:4870:-368.012,0,-241.441	1/1:83:0,83:0:0:83:2954:-266.093,-24.9855,0	1/1:309:0,309:0:0:309:10933:-983.876,-93.0183,0	1/1:227:1,226:1:36:226:8028:-718.946,-64.7355,0	1/1:176:0,176:0:0:176:6253:-562.868,-52.9813,0	1/1:109:1,108:1:36:108:3843:-342.467,-29.214,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:144:0,144:0:0:144:5151:-463.731,-43.3483,0	1/1:117:1,116:1:36:116:4123:-367.656,-31.6222,0	1/1:409:1,408:1:36:408:14566:-1307.09,-119.523,0	1/1:61:0,61:0:0:61:2182:-195.282,-18.3628,0	1/1:63:0,63:0:0:63:2222:-200.244,-18.9649,0	0/1:35:18,17:18:648:17:604:-44.1546,0,-48.1158	0/1:121:55,66:55:1976:66:2337:-174.164,0,-141.69	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:78:0,78:0:0:78:2724:-245.405,-23.4803,0	1/1:60:0,60:0:0:60:2129:-191.877,-18.0618,0	1/1:39:0,39:0:0:39:1376:-124.139,-11.7402,0	0/1:64:22,42:22:771:42:1487:-114.787,0,-50.4444	0/1:54:39,15:39:1404:15:517:-30.599,0,-110.404	1/1:166:0,166:0:0:166:5932:-533.988,-49.971,0	1/1:108:0,108:0:0:108:3831:-344.987,-32.5112,0
chr04	27604369	.	CAAT	AAAC,AAAT	288805	PASS	AB=0.538925,0.457968;ABP=75.026,86.9802;AC=148,40;AF=0.787234,0.212766;AN=188;AO=10938,2519;CIGAR=1X2M1X,1X3M;DP=13496;DPB=13496;DPRA=0,1.25454;EPP=23754.6,5472.95;EPPR=0;GTI=2;LEN=4,1;MEANALT=1.89362,2.42857;MQM=59.9664,59.757;MQMR=0;NS=94;NUMALT=2;ODDS=5.57082;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=386440,88768;QR=0;RO=0;RPL=0,0;RPP=23754.6,5472.95;RPPR=0;RPR=10938,2519;RUN=1,1;SAF=0,0;SAP=23754.6,5472.95;SAR=10938,2519;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:97:0,49,46:0:0:49,46:1745,1616:-273.812,-131.581,-116.83,-142.287,0,-128.439	1/1:186:0,185,0:0:0:185,0:6477,0:-582.735,-55.6906,0,-582.735,-55.6906,-582.735	1/1:246:0,245,0:0:0:245,0:8650,0:-778.256,-73.7524,0,-778.256,-73.7524,-778.256	1/1:380:0,378,0:0:0:378,0:13383,0:-1202.66,-113.789,0,-1202.66,-113.789,-1202.66	1/2:133:0,67,66:0:0:67,66:2356,2343:-382.983,-191.208,-171.039,-192.128,0,-172.26	1/2:116:0,49,67:0:0:49,67:1753,2355:-334.977,-192.028,-177.277,-143.304,0,-123.135	1/2:130:0,64,66:0:0:64,66:2251,2322:-372.603,-189.37,-170.104,-183.585,0,-163.717	1/2:218:0,120,96:0:0:120,96:4236,3393:-621.363,-276.418,-240.294,-345.035,0,-316.137	1/1:237:0,236,0:0:0:236,0:8355,0:-751.603,-71.0431,0,-751.603,-71.0431,-751.603	1/1:137:0,136,0:0:0:136,0:4779,0:-430.053,-40.9401,0,-430.053,-40.9401,-430.053	1/2:24:0,10,14:0:0:10,14:346,487:-68.0611,-39.9448,-36.9345,-28.4629,0,-24.2485	1/1:107:0,107,0:0:0:107,0:3782,0:-340.582,-32.2102,0,-340.582,-32.2102,-340.582	1/1:74:0,74,0:0:0:74,0:2623,0:-236.319,-22.2762,0,-236.319,-22.2762,-236.319	1/1:64:0,63,0:0:0:63,0:2214,0:-199.243,-18.9649,0,-199.243,-18.9649,-199.243	1/1:69:0,69,0:0:0:69,0:2468,0:-222.374,-20.7711,0,-222.374,-20.7711,-222.374	1/2:100:0,74,26:0:0:74,26:2604,924:-287.628,-75.6509,-53.3747,-212.332,0,-204.505	1/1:27:0,27,0:0:0:27,0:944,0:-85.2728,-8.12781,0,-85.2728,-8.12781,-85.2728	1/1:36:0,36,0:0:0:36,0:1275,0:-115.052,-10.8371,0,-115.052,-10.8371,-115.052	1/2:14:0,7,7:0:0:7,7:250,252:-41.3029,-20.9217,-18.8145,-20.7395,0,-18.6323	1/2:276:0,138,138:0:0:138,138:4867,4858:-792.041,-395.752,-354.21,-396.641,0,-355.099	1/2:238:0,129,107:0:0:129,107:4562,3782:-679.678,-308.114,-269.281,-371.68,0,-339.47	1/1:297:0,297,0:0:0:297,0:10464,0:-941.689,-89.4059,0,-941.689,-89.4059,-941.689	1/2:215:0,117,97:0:0:117,97:4164,3441:-619.744,-280.376,-245.155,-339.442,0,-310.242	1/2:109:0,55,54:0:0:55,54:1955,1898:-314.137,-154.823,-138.266,-159.668,0,-143.412	1/1:132:0,131,0:0:0:131,0:4638,0:-417.335,-39.4349,0,-417.335,-39.4349,-417.335	1/2:455:0,252,203:0:0:252,203:8912,7142:-1307.57,-581.712,-505.853,-726.212,0,-665.102	1/2:236:0,114,122:0:0:114,122:4048,4291:-679.434,-349.596,-315.278,-330.192,0,-293.466	1/2:19:0,10,9:0:0:10,9:360,311:-54.9962,-25.6145,-22.6042,-29.734,0,-27.0247	1/1:468:0,464,1:0:0:464,1:16397,32:-1475.11,-139.678,0,-1472.53,-137.095,-1472.23	1/2:255:0,136,119:0:0:136,119:4805,4225:-735.904,-344.589,-303.649,-391.67,0,-355.847	1/2:157:0,89,68:0:0:89,68:3151,2400:-452.457,-195.786,-168.994,-257.025,0,-236.555	1/2:17:0,10,7:0:0:10,7:358,248:-49.754,-20.557,-17.5467,-29.5526,0,-27.4454	1/2:21:0,14,7:0:0:14,7:492,252:-60.9613,-20.9217,-16.7073,-40.3966,0,-38.2894	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:7:0,6,1:0:0:6,1:215,36:-20.8291,-3.29724,-1.49106,-17.8914,0,-17.5904	1/1:15:0,15,0:0:0:15,0:519,0:-47.0363,-4.51545,0,-47.0363,-4.51545,-47.0363	1/1:194:0,193,0:0:0:193,0:6830,0:-614.42,-58.0988,0,-614.42,-58.0988,-614.42	1/1:339:0,338,0:0:0:338,0:11848,0:-1065.84,-101.748,0,-1065.84,-101.748,-1065.84	1/1:29:0,29,0:0:0:29,0:1021,0:-92.1938,-8.72987,0,-92.1938,-8.72987,-92.1938	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:223:0,126,95:0:0:126,95:4411,3336:-630.411,-271.523,-233.593,-358.904,0,-330.306	1/2:17:0,7,10:0:0:7,10:252,356:-49.9345,-29.3709,-27.2637,-20.9217,0,-17.9114	1/2:357:0,215,142:0:0:215,142:7584,5005:-1025.38,-407.848,-343.127,-617.882,0,-575.135	1/2:37:0,17,20:0:0:17,20:605,711:-107.603,-58.295,-53.1775,-49.6635,0,-43.6429	1/1:71:0,71,0:0:0:71,0:2505,0:-225.703,-21.3731,0,-225.703,-21.3731,-225.703	1/1:248:0,247,0:0:0:247,0:8753,0:-787.471,-74.3544,0,-787.471,-74.3544,-787.471	1/1:203:0,203,0:0:0:203,0:7171,0:-645.444,-61.1091,0,-645.444,-61.1091,-645.444	1/2:313:0,167,146:0:0:167,146:5869,5121:-894.592,-417.045,-366.773,-477.898,0,-433.948	1/2:156:0,68,88:0:0:68,88:2388,3106:-447.443,-253.091,-232.621,-194.704,0,-168.213	1/1:124:0,124,0:0:0:124,0:4352,0:-391.856,-37.3277,0,-391.856,-37.3277,-391.856	1/1:237:0,237,0:0:0:237,0:8408,0:-756.732,-71.3441,0,-756.732,-71.3441,-756.732	1/1:18:0,18,0:0:0:18,0:646,0:-58.4714,-5.41854,0,-58.4714,-5.41854,-58.4714	1/1:227:0,227,0:0:0:227,0:8088,0:-727.938,-68.3338,0,-727.938,-68.3338,-727.938	1/2:128:0,57,68:0:0:57,68:2015,2427:-362.019,-197.909,-180.751,-164.173,0,-143.703	1/1:44:0,44,0:0:0:44,0:1561,0:-140.78,-13.2453,0,-140.78,-13.2453,-140.78	1/1:204:0,202,1:0:0:202,1:7141,36:-642.464,-60.8081,0,-639.527,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chr04	27657972	.	A	G	70002.4	PASS	AB=0.507282;ABP=5.82493;AC=44;AF=0.234043;AN=188;AO=3145;CIGAR=1X;DP=15385;DPB=15385;DPRA=1.07679;EPP=6823.61;EPPR=26571;GTI=2;LEN=1;MEANALT=1.07547;MQM=59.4086;MQMR=59.8689;NS=94;NUMALT=1;ODDS=5.22761;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110530;QR=434827;RO=12235;RPL=1492;RPP=20.9075;RPPR=17.8336;RPR=1653;RUN=1;SAF=1491;SAP=21.3549;SAR=1654;SRF=5973;SRP=17.8336;SRR=6262;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:37,46:37:1307:46:1633:-122.255,0,-92.9452	0/0:225:225,0:225:7993:0:0:0,-67.7317,-719.198	0/0:261:261,0:261:9265:0:0:0,-78.5688,-833.596	0/0:368:366,1:366:13005:1:36:0,-107.24,-1166.54	0/1:66:32,34:32:1139:34:1178:-86.4351,0,-82.9504	0/1:85:37,48:37:1328:48:1688:-126.531,0,-94.2265	0/1:151:59,92:59:2099:92:3188:-241.306,0,-143.724	0/1:225:111,114:111:3940:114:4051:-296.554,0,-286.349	0/0:190:185,4:185:6570:4:144:0,-43.821,-578.087	0/0:179:179,0:179:6347:0:0:0,-53.8844,-571.323	0/1:133:66,67:66:2348:67:2315:-168.537,0,-171.543	0/0:170:170,0:170:6036:0:0:0,-51.1751,-543.141	0/0:166:166,0:166:5917:0:0:0,-49.971,-532.64	0/0:135:135,0:135:4803:0:0:0,-40.639,-432.415	0/0:184:184,0:184:6514:0:0:0,-55.3895,-585.411	0/1:116:54,62:54:1915:62:2182:-161.717,0,-137.578	0/0:140:140,0:140:5003:0:0:0,-42.1442,-450.417	0/0:128:128,0:128:4558:0:0:0,-38.5318,-410.387	0/1:88:47,41:47:1683:41:1432:-102.589,0,-125.262	0/1:252:120,132:120:4265:132:4648:-342.585,0,-307.943	0/1:268:135,133:135:4797:133:4674:-340.019,0,-350.188	0/0:135:135,0:135:4818:0:0:0,-40.639,-433.402	0/1:197:93,104:93:3293:104:3686:-272.542,0,-237.218	0/1:211:98,112:98:3467:112:3950:-291.919,0,-248.666	0/0:80:80,0:80:2849:0:0:0,-24.0824,-255.627	0/1:403:191,212:191:6803:212:7434:-547.589,0,-490.512	0/1:330:177,153:177:6307:153:5375:-383.522,0,-468.384	0/1:91:50,41:50:1792:41:1460:-103.931,0,-134.08	0/0:372:370,2:370:13144:2:72:0,-105.146,-1175.74	0/1:178:85,93:85:3008:93:3267:-240.602,0,-217.361	0/1:178:112,66:112:3965:66:2322:-155.622,0,-303.455	1/1:5:0,5:0:0:5:180:-16.5437,-1.50515,0	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:16:8,8:8:273:8:288:-21.4427,0,-20.0837	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:418:418,0:418:14812:0:0:0,-125.831,-1332.83	0/1:216:113,103:113:4036:103:3614:-260.323,0,-298.277	0/0:121:121,0:121:4276:0:0:0,-36.4246,-385.017	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:255:250,5:250:8870:5:164:0,-61.6876,-783.089	0/1:78:40,38:40:1406:38:1361:-99.2585,0,-103.349	0/1:241:106,135:106:3800:135:4728:-353.087,0,-269.645	0/1:159:71,88:71:2532:88:3049:-226.742,0,-180.268	0/0:160:160,0:160:5697:0:0:0,-48.1648,-512.839	0/0:187:187,0:187:6625:0:0:0,-56.2926,-596.331	0/0:126:126,0:126:4482:0:0:0,-37.9298,-403.551	0/1:288:156,132:156:5528:132:4626:-329.791,0,-410.949	0/1:160:79,81:79:2775:81:2858:-209.262,0,-201.826	0/0:196:196,0:196:6989:0:0:0,-59.0019,-629.008	0/0:250:250,0:250:8913:0:0:0,-75.2575,-802.154	1/1:12:1,11:1:36:11:392:-32.0194,-0.0140851,0	0/0:340:337,3:337:12021:3:108:0,-92.275,-1071.65	0/1:64:35,29:35:1252:29:1024:-73.1379,0,-93.7168	0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6803	0/0:228:225,3:225:8011:3:108:0,-58.5597,-709.869	0/1:108:63,45:63:2242:45:1576:-109.528,0,-169.519	0/1:5:2,3:2:72:3:99:-7.73143,0,-5.33157	0/1:15:6,9:6:212:9:320:-24.6187,0,-14.9093	0/1:136:70,66:70:2495:66:2319:-167.651,0,-183.863	0/0:234:233,1:233:8316:1:36:0,-66.858,-744.479	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:263:144,119:144:5129:119:4180:-297.177,0,-382.572	0/1:239:127,111:127:4482:111:3931:-281.68,0,-330.362	0/0:131:131,0:131:4636:0:0:0,-39.4349,-417.37	0/0:155:155,0:155:5518:0:0:0,-46.6596,-496.746	0/0:283:279,4:279:9933:4:144:0,-71.8779,-880.593	0/0:223:222,1:222:7911:1:36:0,-63.534,-708.388	0/0:65:65,0:65:2285:0:0:0,-19.5669,-205.909	0/0:135:135,0:135:4797:0:0:0,-40.639,-431.888	0/0:182:182,0:182:6449:0:0:0,-54.7875,-580.375	0/1:36:14,22:14:478:22:747:-56.7052,0,-32.5061	0/1:119:58,61:58:2042:61:2149:-157.834,0,-148.22	0/0:132:130,2:130:4632:2:72:0,-32.8992,-410.198	0/0:257:257,0:257:9169:0:0:0,-77.3647,-824.4	0/0:323:323,0:323:11490:0:0:0,-97.2327,-1033.71	0/0:102:102,0:102:3632:0:0:0,-30.7051,-327.084	0/0:200:197,3:197:6989:3:108:0,-50.1308,-618.991	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/0:212:212,0:212:7539:0:0:0,-63.8184,-678.55	0/1:173:92,81:92:3275:81:2854:-204.877,0,-242.761	0/0:331:331,0:331:11771:0:0:0,-99.6409,-1059.11	0/0:197:197,0:197:7015:0:0:0,-59.3029,-631.399	0/0:159:159,0:159:5648:0:0:0,-47.8638,-508.44	0/1:152:67,85:67:2400:85:2971:-221.818,0,-170.498	0/1:282:136,146:136:4819:146:5106:-374.783,0,-347.927	0/0:96:96,0:96:3407:0:0:0,-28.8989,-306.843	0/0:179:179,0:179:6335:0:0:0,-53.8844,-570.247	0/0:147:147,0:147:5211:0:0:0,-44.2514,-469.014	0/0:72:71,0:71:2521:0:0:0,-21.3731,-226.781	0/1:142:61,81:61:2176:81:2849:-213.886,0,-152.87	0/1:147:48,99:48:1711:99:3514:-272.091,0,-109.937	0/0:156:156,0:156:5498:0:0:0,-46.9607,-494.583	0/0:243:243,0:243:8637:0:0:0,-73.1503,-777.323
chr04	27662886	.	T	C	170206	PASS	AB=0.462508;ABP=61.1393;AC=146;AF=0.776596;AN=188;AO=8004;CIGAR=1X;DP=10578;DPB=10578;DPRA=0;EPP=17184.3;EPPR=5518.72;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9928;MQMR=59.9922;NS=94;NUMALT=1;ODDS=1.82964;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284707;QR=92170;RO=2568;RPL=19;RPP=17218.8;RPPR=5527.36;RPR=7985;RUN=1;SAF=8000;SAP=17348.7;SAR=4;SRF=2567;SRP=5570.67;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:13,16:13:460:16:576:-43.4451,0,-33.0055	1/1:216:2,214:2:72:214:7624:-679.363,-58.1858,0	1/1:183:0,183:0:0:183:6510:-585.988,-55.0885,0	1/1:267:0,267:0:0:267:9468:-852.088,-80.375,0	0/1:100:62,38:62:2224:38:1362:-92.7778,0,-170.321	0/1:40:22,18:22:788:18:640:-45.8881,0,-59.2036	0/1:117:73,44:73:2616:44:1571:-106.46,0,-200.467	0/1:167:97,70:97:3492:70:2478:-173.001,0,-264.217	1/1:73:0,73:0:0:73:2603:-234.518,-21.9752,0	1/1:95:0,95:0:0:95:3376:-304.057,-28.5979,0	0/1:79:35,44:35:1256:44:1584:-119.07,0,-89.5639	1/1:85:0,85:0:0:85:3018:-271.851,-25.5876,0	1/1:76:0,76:0:0:76:2713:-244.414,-22.8783,0	1/1:105:0,104:0:0:104:3709:-333.651,-31.3071,0	1/1:88:0,88:0:0:88:3148:-283.546,-26.4906,0	0/1:75:38,37:38:1368:37:1324:-96.8848,0,-100.844	1/1:89:0,89:0:0:89:3157:-284.355,-26.7917,0	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	0/1:49:30,19:30:1065:19:663:-45.243,0,-81.4093	0/1:307:169,138:169:6064:138:4911:-349.728,0,-453.445	0/1:157:72,85:72:2584:85:2975:-220.721,0,-185.547	1/1:147:1,146:1:36:146:5181:-462.835,-40.6531,0	0/1:119:69,50:69:2484:50:1742:-121.238,0,-187.99	0/1:89:51,38:51:1836:38:1347:-94.7378,0,-138.729	1/1:64:0,64:0:0:64:2252:-202.942,-19.2659,0	0/1:340:191,149:191:6851:149:5283:-373.254,0,-514.307	0/1:256:143,113:143:5119:113:4004:-283.487,0,-383.788	0/1:46:17,29:17:612:29:1040:-80.067,0,-41.5661	1/1:282:1,281:1:36:281:9991:-895.534,-81.2922,0	0/1:158:91,67:91:3276:67:2378:-166.714,0,-247.496	0/1:185:106,78:106:3803:78:2775:-194.39,0,-286.865	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:11:5,6:5:180:6:203:-15.2898,0,-13.2407	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:251:0,251:0:0:251:8943:-804.855,-75.5585,0	0/1:201:101,99:101:3624:99:3524:-256.804,0,-265.799	1/1:87:0,87:0:0:87:3086:-277.969,-26.1896,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:169:0,169:0:0:169:6009:-540.918,-50.8741,0	0/1:52:30,22:30:1076:22:784:-55.2304,0,-81.4993	0/1:166:84,82:84:3024:82:2919:-212.974,0,-222.418	0/1:170:87,83:87:3107:83:2975:-216.807,0,-228.663	1/1:56:1,55:1:36:55:1939:-171.188,-13.2594,0	1/1:90:0,90:0:0:90:3186:-286.965,-27.0927,0	1/1:126:0,126:0:0:126:4470:-402.473,-37.9298,0	0/1:212:117,94:117:4200:94:3326:-235.828,0,-314.451	0/1:136:51,85:51:1832:85:3007:-229.921,0,-124.221	1/1:147:0,147:0:0:147:5260:-473.537,-44.2514,0	1/1:83:0,83:0:0:83:2958:-266.453,-24.9855,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:153:0,153:0:0:153:5433:-489.103,-46.0576,0	0/1:49:23,26:23:828:26:931:-69.3583,0,-60.0936	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:160:0,160:0:0:160:5671:-510.514,-48.1648,0	0/1:43:24,19:24:864:19:676:-48.2237,0,-65.1383	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/1:79:45,34:45:1612:34:1212:-85.605,0,-121.589	1/1:136:1,135:1:36:135:4814:-429.818,-37.3418,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:232:105,127:105:3776:127:4488:-334.254,0,-270.198	0/1:197:112,85:112:4024:85:3035:-214.077,0,-303.044	1/1:59:0,58:0:0:58:2075:-186.66,-17.4597,0	1/1:119:0,119:0:0:119:4210:-379.085,-35.8226,0	1/1:286:2,284:2:72:284:10118:-903.718,-79.2579,0	1/1:116:0,116:0:0:116:4121:-371.076,-34.9195,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:88:0,88:0:0:88:3151:-283.814,-26.4906,0	1/1:128:0,128:0:0:128:4536:-408.408,-38.5318,0	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:114:60,54:60:2160:54:1893:-136.329,0,-160.349	1/1:53:0,53:0:0:53:1891:-170.468,-15.9546,0	1/1:115:1,114:1:36:114:4040:-360.192,-31.0202,0	1/1:185:1,184:1:36:184:6541:-585.179,-52.0923,0	1/1:133:0,133:0:0:133:4768:-429.277,-40.037,0	1/1:162:2,160:2:72:160:5736:-508.817,-41.9301,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:135:0,135:0:0:135:4795:-431.709,-40.6391,0	0/1:131:78,53:78:2789:53:1859:-128.154,0,-211.814	1/1:175:0,175:0:0:175:6254:-562.955,-52.6803,0	1/1:121:0,120:0:0:120:4263:-383.49,-36.1236,0	1/1:74:0,74:0:0:74:2643:-238.116,-22.2762,0	0/1:127:60,67:60:2156:67:2379:-176.137,0,-156.076	0/1:213:104,109:104:3736:109:3886:-285.815,0,-272.32	1/1:43:0,43:0:0:43:1526:-137.632,-12.9443,0	1/1:79:0,79:0:0:79:2824:-254.399,-23.7814,0	1/1:73:0,73:0:0:73:2599:-234.159,-21.9752,0	1/1:68:0,68:0:0:68:2423:-218.326,-20.47,0	0/1:93:51,42:51:1824:42:1504:-107.659,0,-136.445	0/1:125:85,40:85:3052:40:1432:-91.5488,0,-237.28	1/1:120:0,120:0:0:120:4268:-384.299,-36.1236,0	1/1:128:0,128:0:0:128:4588:-413.084,-38.5318,0
chr04	27693402	.	C	T	37572.1	PASS	AB=0.501362;ABP=3.0813;AC=42;AF=0.223404;AN=188;AO=2221;CIGAR=1X;DP=9658;DPB=9658;DPRA=1.36364;EPP=4791.17;EPPR=15494.4;GTI=0;LEN=1;MEANALT=1.05882;MQM=59.1022;MQMR=59.4087;NS=94;NUMALT=1;ODDS=4.50026;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79475;QR=265370;RO=7431;RPL=2217;RPP=4791.17;RPPR=15494.4;RPR=4;RUN=1;SAF=0;SAP=4825.85;SAR=2221;SRF=0;SRP=16139.2;SRR=7431;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:23,12:23:824:12:432:-28.6818,0,-63.9023	0/0:138:138,0:138:4935:0:0:0,-41.5421,-444.12	0/0:123:123,0:123:4412:0:0:0,-37.0267,-396.795	0/0:252:250,1:250:8939:1:36:0,-72.3191,-800.788	0/1:104:56,48:56:2008:48:1709:-122.588,0,-149.683	0/1:49:37,12:37:1320:12:432:-24.4255,0,-104.236	0/1:132:71,61:71:2531:61:2184:-157.054,0,-187.798	0/1:151:84,67:84:2966:67:2408:-171.351,0,-221.627	0/0:108:107,1:107:3823:1:36:0,-28.913,-340.493	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.616	0/1:57:28,29:28:1000:29:1044:-77.0976,0,-73.1319	0/0:76:76,0:76:2720:0:0:0,-22.8783,-244.943	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.114	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.216	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.144	0/1:70:35,35:35:1256:35:1241:-90.8487,0,-92.2164	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.634	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.2097	0/1:41:8,33:8:288:33:1184:-94.421,0,-13.8798	0/1:203:106,97:106:3782:97:3484:-252.598,0,-279.336	0/1:135:50,85:50:1792:85:3048:-233.804,0,-120.76	0/0:179:179,0:179:6376:0:0:0,-53.8844,-573.518	0/1:141:74,67:74:2643:67:2408:-174.362,0,-195.636	0/1:180:76,104:76:2724:104:3732:-281.828,0,-191.216	0/0:86:86,0:86:3064:0:0:0,-25.8886,-275.912	0/1:257:113,144:113:4026:144:5172:-388.193,0,-283.949	0/1:197:104,93:104:3720:93:3325:-239.988,0,-275.128	0/1:34:19,15:19:680:15:531:-37.8331,0,-51.2908	0/0:222:221,1:221:7900:1:36:0,-63.2304,-707.303	0/1:171:89,82:89:3167:82:2944:-213.664,0,-233.562	0/1:136:67,69:67:2386:69:2453:-179.917,0,-173.994	0/1:11:4,7:4:135:7:252:-19.7176,0,-9.16739	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.406	0/1:20:9,11:9:320:11:396:-29.9621,0,-23.1218	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.2585	0/0:167:167,0:167:5959:0:0:0,-50.272,-536.309	0/1:240:135,104:135:4806:104:3727:-263.136,0,-360.048	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.839	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:143:142,1:142:5067:1:36:0,-39.449,-452.373	0/1:28:10,18:10:360:18:648:-50.1734,0,-24.3155	0/1:166:83,83:83:2955:83:2964:-216.815,0,-216.168	0/1:83:37,46:37:1324:46:1656:-124.286,0,-94.4757	0/0:57:57,0:57:2027:0:0:0,-17.1587,-182.575	0/0:98:98,0:98:3485:0:0:0,-29.5009,-313.787	0/0:138:138,0:138:4921:0:0:0,-41.5421,-442.829	0/1:168:104,64:104:3685:64:2282:-154.963,0,-281.2	0/1:155:60,95:60:2156:95:3382:-257.859,0,-147.609	0/0:175:174,0:174:6235:0:0:0,-52.3792,-560.632	0/0:150:149,1:149:5333:1:36:0,-41.5562,-476.385	0/1:17:12,5:12:428:5:176:-11.0496,0,-33.7404	0/0:137:136,1:136:4880:1:36:0,-37.6926,-435.618	0/1:44:22,22:22:784:22:777:-56.9889,0,-57.592	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:165:165,0:165:5895:0:0:0,-49.6699,-529.981	0/1:66:30,36:30:1068:36:1296:-97.0352,0,-76.5465	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:25:20,5:20:716:5:180:-9.02631,0,-57.2256	0/1:93:73,20:73:2612:20:716:-36.7245,0,-207.259	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.85	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:222:106,116:106:3771:116:4114:-303.58,0,-272.735	0/1:271:133,136:133:4750:136:4880:-357.914,0,-346.258	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.644	0/0:85:85,0:85:3028:0:0:0,-25.5875,-272.281	0/0:232:227,5:227:8057:5:176:0,-53.6565,-708.854	0/0:149:149,0:149:5339:0:0:0,-44.8535,-480.534	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.195	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.853	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.45	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:94:34,60:34:1224:60:2127:-162.798,0,-82.1702	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.677	0/0:168:168,0:168:5972:0:0:0,-50.573,-537.488	0/0:169:168,0:168:6024:0:0:0,-50.573,-541.713	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.16	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.811	0/1:15:9,6:9:320:6:216:-15.2294,0,-24.6269	0/0:136:136,0:136:4834:0:0:0,-40.9401,-435.109	0/1:161:74,87:74:2652:87:3081:-228.632,0,-190.286	0/0:193:192,1:192:6854:1:36:0,-54.52,-613.229	0/0:106:106,0:106:3783:0:0:0,-31.9092,-340.63	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/1:82:40,42:40:1427:42:1512:-111.652,0,-104.025	0/1:129:54,75:54:1936:75:2690:-203.466,0,-135.666	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3519	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.042	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.159	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.424	0/1:111:57,54:57:2031:54:1940:-140.976,0,-149.245	0/1:65:21,44:21:752:44:1584:-123.18,0,-48.4207	0/0:127:126,1:126:4512:1:36:0,-34.6325,-402.56	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.024
chr04	27884541	.	A	C	331048	PASS	AB=0.565017;ABP=281.988;AC=146;AF=0.776596;AN=188;AO=15349;CIGAR=1X;DP=18687;DPB=18687;DPRA=0;EPP=33133.5;EPPR=7171.17;GTI=3;LEN=1;MEANALT=1.06383;MQM=59.8731;MQMR=59.9982;NS=94;NUMALT=1;ODDS=3.6108;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=547433;QR=110948;RO=3329;RPL=23;RPP=33133.5;RPPR=7171.17;RPR=15326;RUN=1;SAF=15349;SAP=33332.9;SAR=0;SRF=3329;SRP=7231.84;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:23,15:23:756:15:540:-37.4974,0,-56.9025	1/1:292:0,292:0:0:292:10422:-937.433,-87.9008,0	1/1:347:0,347:0:0:347:12321:-1108.73,-104.457,0	1/1:426:1,425:1:36:425:15233:-1366.57,-124.641,0	0/1:156:92,64:92:3130:64:2292:-159.581,0,-234.959	0/1:114:42,72:42:1439:72:2588:-198.84,0,-95.4809	0/1:316:148,168:148:5017:168:5989:-443.835,0,-356.552	0/1:304:135,167:135:4560:167:5954:-444.652,0,-319.296	1/1:134:0,134:0:0:134:4754:-428.018,-40.338,0	1/1:159:0,159:0:0:159:5666:-510.007,-47.8638,0	0/1:74:27,47:27:937:47:1650:-126.501,0,-62.3649	1/1:88:0,88:0:0:88:3150:-283.695,-26.4906,0	1/1:95:0,95:0:0:95:3354:-301.755,-28.5979,0	1/1:135:0,135:0:0:135:4782:-430.513,-40.6391,0	1/1:76:0,76:0:0:76:2717:-244.762,-22.8783,0	0/1:67:30,37:30:921:37:1328:-99.6532,0,-63.0004	0/1:94:37,57:37:1154:57:2040:-155.575,0,-75.8391	1/1:102:0,102:0:0:102:3626:-326.543,-30.7051,0	0/1:36:18,18:18:587:18:648:-47.8148,0,-42.2992	0/1:680:302,378:302:9806:378:13522:-1011.88,0,-677.82	0/1:246:117,129:117:4055:129:4600:-340.108,0,-291.084	1/1:294:1,293:1:36:293:10415:-933.675,-84.9045,0	0/1:199:93,106:93:3066:106:3800:-282.293,0,-216.258	0/1:182:89,93:89:2751:93:3307:-243.061,0,-193.025	1/1:167:1,166:1:36:166:5925:-529.479,-46.6737,0	0/1:496:251,245:251:8379:245:8771:-640.064,0,-604.824	0/1:402:155,247:155:5244:247:8777:-668.904,0,-351.09	0/1:47:17,29:17:608:29:1040:-79.7072,0,-40.8449	1/1:855:1,854:1:36:854:30471:-2737.37,-253.782,0	0/1:232:97,132:97:3127:132:4719:-355.528,0,-212.354	0/1:302:117,185:117:3991:185:6607:-503.794,0,-268.468	0/1:12:3,9:3:104:9:324:-25.8935,0,-6.09045	0/1:24:8,16:8:265:16:563:-43.7744,0,-16.9474	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:11:5,6:5:161:6:216:-16.4792,0,-11.4952	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:300:1,299:1:21:299:10682:-959.188,-88.2091,0	0/1:376:171,205:171:5677:205:7297:-543.57,0,-397.871	1/1:67:0,67:0:0:67:2399:-216.166,-20.169,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:427:1,426:1:36:426:15206:-1364.57,-124.942,0	0/1:42:11,31:11:388:31:1108:-87.3877,0,-22.6141	0/1:296:119,177:119:3954:177:6304:-478.348,0,-266.944	0/1:102:52,50:52:1739:50:1781:-129.866,0,-126.076	1/1:102:0,102:0:0:102:3652:-328.884,-30.7051,0	1/1:241:0,241:0:0:241:8589:-772.58,-72.5482,0	1/1:271:1,270:1:36:270:9619:-862.06,-77.9809,0	0/1:371:167,203:167:5583:203:7245:-540.341,0,-390.858	0/1:230:77,153:77:2551:153:5442:-420.598,0,-160.594	1/1:459:2,457:2:42:457:16341:-1466.19,-134.183,0	1/1:338:1,337:1:36:337:12043:-1080.1,-98.1499,0	0/1:20:8,12:8:284:12:428:-32.8275,0,-19.8828	1/1:357:2,355:2:42:355:12704:-1139.19,-103.478,0	0/1:99:33,66:33:1138:66:2364:-183.216,0,-72.9192	1/1:51:0,51:0:0:51:1813:-163.412,-15.3525,0	1/1:294:0,294:0:0:294:10434:-938.553,-88.5028,0	0/1:68:24,44:24:762:44:1555:-119.701,0,-48.4019	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:12:2,10:2:57:10:360:-29.1319,0,-1.80095	0/1:178:84,94:84:2811:94:3360:-249.015,0,-199.639	1/1:155:1,154:1:36:154:5478:-489.544,-43.0614,0	1/1:20:0,20:0:0:20:720:-65.1284,-6.0206,0	0/1:512:186,326:186:6226:326:11545:-884.666,0,-406.316	0/1:340:160,180:160:5334:180:6430:-476.435,0,-377.847	1/1:187:0,187:0:0:187:6708:-602.519,-56.2926,0	1/1:341:1,340:1:36:340:12134:-1088.18,-99.053,0	1/1:343:5,338:5:180:338:12020:-1064.83,-86.7012,0	1/1:303:2,301:2:57:301:10698:-957.153,-85.7988,0	1/1:36:0,36:0:0:36:1288:-116.179,-10.8371,0	1/1:118:2,115:2:72:115:4106:-362.882,-28.7436,0	1/1:95:0,95:0:0:95:3409:-307.023,-28.5979,0	0/1:42:19,23:19:638:23:817:-61.2067,0,-45.0896	0/1:132:60,72:60:2035:72:2567:-191.544,0,-143.675	1/1:109:0,109:0:0:109:3851:-346.78,-32.8123,0	1/1:373:0,373:0:0:373:13268:-1193.88,-112.284,0	1/1:440:0,440:0:0:440:15677:-1409.77,-132.453,0	1/1:384:1,383:1:36:383:13674:-1226.79,-111.997,0	1/1:252:5,247:5:165:247:8820:-778.601,-60.686,0	0/1:31:12,19:12:428:19:660:-50.3895,0,-29.5269	1/1:263:0,262:0:0:262:9348:-840.913,-78.8699,0	0/1:242:102,140:102:3361:140:4996:-376.504,0,-229.85	1/1:465:0,465:0:0:465:16612:-1494.65,-139.979,0	1/1:142:0,142:0:0:142:5049:-454.479,-42.7463,0	1/1:90:1,89:1:36:89:3178:-282.644,-23.4944,0	0/1:112:45,67:45:1551:67:2370:-179.839,0,-106.159	0/1:195:82,113:82:2779:113:4060:-306.883,0,-191.647	1/1:61:1,60:1:36:60:2140:-189.268,-14.7646,0	1/1:116:0,116:0:0:116:4151:-373.765,-34.9195,0	1/1:101:0,101:0:0:101:3621:-326.094,-30.404,0	1/1:77:0,77:0:0:77:2760:-248.64,-23.1793,0	0/1:82:31,51:31:1054:51:1816:-139.015,0,-70.4778	0/1:84:47,37:47:1529:37:1332:-94.8955,0,-112.596	1/1:324:0,324:0:0:324:11556:-1039.86,-97.5337,0	1/1:157:0,157:0:0:157:5585:-502.737,-47.2617,0
chr04	27899789	.	C	T	153868	PASS	AB=0.538306;ABP=34.4522;AC=150;AF=0.797872;AN=188;AO=5619;CIGAR=1X;DP=6771;DPB=6771;DPRA=0;EPP=466.376;EPPR=8.11609;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9653;MQMR=60;NS=94;NUMALT=1;ODDS=2.14519;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199885;QR=40771;RO=1150;RPL=1;RPP=12195.8;RPPR=2500.2;RPR=5618;RUN=1;SAF=2263;SAP=464.685;SAR=3356;SRF=549;SRP=8.11609;SRR=601;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:23,13:23:816:13:468:-31.6226,0,-62.9246	1/1:48:1,47:1:36:47:1672:-147.167,-10.8512,0	1/1:73:2,71:2:72:71:2548:-222.734,-15.1385,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:22:9,13:9:312:13:468:-35.837,0,-21.7927	0/1:31:19,12:19:676:12:424:-29.1639,0,-51.8361	0/1:50:25,25:25:877:25:896:-65.9089,0,-64.1937	0/1:49:21,28:21:747:28:998:-75.297,0,-52.8038	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:38:0,38:0:0:38:1363:-122.971,-11.4391,0	0/1:192:45,147:45:1591:147:5142:-405.13,0,-85.6818	1/1:161:0,161:0:0:161:5736:-516.352,-48.4658,0	1/1:107:0,107:0:0:107:3794:-341.658,-32.2102,0	1/1:104:0,104:0:0:104:3710:-334.102,-31.3071,0	1/1:93:0,93:0:0:93:3308:-297.939,-27.9958,0	0/1:85:52,33:52:1835:33:1184:-81.2808,0,-139.842	0/1:80:47,33:47:1658:33:1179:-82.3348,0,-125.424	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	0/1:126:36,90:36:1276:90:3193:-249.664,0,-77.2133	0/1:52:26,26:26:932:26:924:-67.8241,0,-68.5453	0/1:52:17,35:17:608:35:1239:-96.1601,0,-39.3985	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:39:20,19:20:712:19:676:-49.4278,0,-52.6665	0/1:37:17,20:17:608:20:716:-53.6296,0,-43.9139	1/1:37:1,36:1:36:36:1292:-112.985,-7.53984,0	0/1:87:50,37:50:1762:37:1328:-93.6326,0,-132.672	0/1:95:47,48:47:1658:48:1724:-126.69,0,-120.908	0/1:51:28,23:28:987:23:824:-59.1308,0,-73.7905	1/1:67:0,67:0:0:67:2403:-216.526,-20.169,0	0/1:29:16,13:16:554:13:459:-32.9142,0,-41.455	0/1:59:31,28:31:1116:28:988:-71.4726,0,-82.9909	1/1:58:0,58:0:0:58:2064:-186.031,-17.4597,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:173:0,173:0:0:173:6139:-552.616,-52.0782,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:67:0,67:0:0:67:2392:-215.467,-20.169,0	1/1:188:0,188:0:0:188:6723:-605.145,-56.5936,0	0/1:41:26,15:26:932:15:540:-36.5943,0,-71.8566	1/1:261:0,261:0:0:261:9218:-829.597,-78.5688,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:53:3,50:3:93:50:1792:-152.886,-7.27786,0	0/1:71:22,49:22:788:49:1740:-135.511,0,-49.8717	0/1:76:40,36:40:1427:36:1262:-90.9966,0,-105.848	0/1:110:70,40:70:2512:40:1440:-96.7844,0,-193.219	1/1:80:0,80:0:0:80:2849:-256.648,-24.0824,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:33:0,33:0:0:33:1167:-105.336,-9.93399,0	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/1:23:9,14:9:324:14:491:-37.5253,0,-22.5822	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:54:0,54:0:0:54:1915:-172.582,-16.2556,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:25:1,24:1:36:24:860:-74.1236,-3.92748,0	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	0/1:20:10,10:10:345:10:356:-26.3606,0,-25.3602	1/1:119:0,119:0:0:119:4244:-382.139,-35.8226,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:40:23,17:23:815:17:604:-42.6494,0,-61.6296	1/1:136:1,135:1:36:135:4806:-429.099,-37.3418,0	0/1:10:1,9:1:36:9:316:-25.7686,0,-0.587975	0/1:32:13,19:13:464:19:671:-51.0835,0,-32.4645	0/1:48:25,23:25:892:23:828:-60.3947,0,-66.1502	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:62:0,62:0:0:62:2212:-199.345,-18.6639,0	1/1:59:0,59:0:0:59:2092:-188.55,-17.7608,0	1/1:197:0,197:0:0:197:6939:-624.586,-59.3029,0	1/1:27:0,27:0:0:27:950:-85.8134,-8.12781,0	1/1:114:0,114:0:0:114:4044:-364.149,-34.3174,0	1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0	0/1:35:13,22:13:468:22:788:-60.7087,0,-31.9236	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	1/1:94:1,93:1:36:93:3306:-294.161,-24.6985,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	1/1:34:0,33:0:0:33:1175:-105.697,-9.93399,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:52:31,21:31:1095:21:756:-52.7137,0,-83.2055	1/1:81:0,81:0:0:81:2900:-261.233,-24.3834,0	1/1:136:0,136:0:0:136:4838:-435.573,-40.9401,0	1/1:93:0,93:0:0:93:3333:-300.176,-27.9958,0	0/1:107:51,56:51:1788:56:1992:-147.343,0,-128.989	0/1:195:107,88:107:3779:88:3110:-221.428,0,-281.609	1/1:31:0,31:0:0:31:1082:-97.6872,-9.33193,0	1/1:114:0,114:0:0:114:4014:-361.442,-34.3174,0	1/1:86:0,86:0:0:86:3079:-277.338,-25.8886,0	1/1:392:1,390:1:36:390:13831:-1241.03,-114.409,0	0/1:260:58,202:58:2062:202:7166:-566.732,0,-107.582	0/1:122:87,35:87:3074:35:1241:-75.2679,0,-240.164	1/1:61:0,61:0:0:61:2173:-195.836,-18.3628,0	1/1:114:0,114:0:0:114:4062:-365.765,-34.3174,0
chr04	27919182	.	A	T	77113.1	PASS	AB=0.475144;ABP=43.059;AC=43;AF=0.231183;AN=186;AO=3575;CIGAR=1X;DP=17070;DPB=17070;DPRA=1.39633;EPP=7766.02;EPPR=29272.3;GTI=1;LEN=1;MEANALT=1.08621;MQM=59.6747;MQMR=59.9552;NS=93;NUMALT=1;ODDS=1.81188;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125616;QR=483093;RO=13483;RPL=1284;RPP=618.949;RPPR=4443.71;RPR=2291;RUN=1;SAF=1284;SAP=618.949;SAR=2291;SRF=4115;SRP=4447.1;SRR=9368;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:88:48,40:48:1724:40:1413:-100.923,0,-128.955	0/0:141:141,0:141:5052:0:0:0,-42.4452,-454.814	0/0:282:281,0:281:10083:0:0:0,-84.5894,-907.03	0/0:440:440,0:440:15730:0:0:0,-132.453,-1415.38	0/1:91:56,35:56:1989:35:1222:-82.8531,0,-151.889	0/1:43:19,24:19:680:24:833:-62.3148,0,-48.5803	0/1:174:61,113:61:2192:113:4017:-309.336,0,-145.166	0/1:191:98,93:98:3516:93:3237:-233.425,0,-259.153	0/0:103:103,0:103:3691:0:0:0,-31.0061,-332.391	0/0:345:345,0:345:12372:0:0:0,-103.855,-1113.26	0/1:97:54,43:54:1940:43:1528:-108.608,0,-145.676	0/0:102:101,1:101:3628:1:36:0,-27.1068,-323.126	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/0:135:135,0:135:4836:0:0:0,-40.639,-435.394	0/1:75:39,36:39:1388:36:1253:-89.8567,0,-102.642	0/1:27:17,10:17:604:10:356:-24.2502,0,-46.5628	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:28:18,10:18:648:10:352:-23.5894,0,-50.223	0/1:404:191,212:191:6860:212:7503:-553.644,0,-495.831	0/1:135:61,74:61:2192:74:2636:-196.832,0,-156.906	0/0:272:271,1:271:9707:1:23:0,-79.5836,-871.281	0/1:232:112,120:112:4012:120:4185:-306.983,0,-291.43	0/1:87:45,42:45:1616:42:1504:-109.457,0,-119.54	0/0:108:108,0:108:3863:0:0:0,-32.5112,-347.865	0/1:740:354,386:354:12664:386:13504:-992.395,0,-916.775	0/1:339:182,157:182:6544:157:5527:-395.42,0,-486.961	0/1:33:20,13:20:712:13:464:-32.1635,0,-54.4727	0/0:530:529,1:529:18959:1:36:0,-155.949,-1702.27	0/1:273:146,127:146:5221:127:4362:-310.491,0,-387.846	0/1:247:155,92:155:5560:92:3246:-217.917,0,-426.168	0/1:14:10,4:10:360:4:129:-7.71324,0,-28.5299	0/1:11:2,9:2:72:9:294:-23.464,0,-3.52539	.:.:.:.:.:.:.:.	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:393:393,0:393:14067:0:0:0,-118.305,-1265.78	0/1:169:104,65:104:3736:65:2243:-151.231,0,-285.561	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.525	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:252:246,6:246:8819:6:212:0,-56.4804,-774.289	0/1:31:14,17:14:504:17:612:-46.0651,0,-36.321	0/1:274:140,130:140:4990:130:4531:-326.242,0,-367.599	0/1:161:77,84:77:2744:84:2971:-219.154,0,-198.737	0/0:114:114,0:114:4087:0:0:0,-34.3174,-368.015	0/0:349:349,0:349:12505:0:0:0,-105.059,-1125.22	0/0:184:181,3:181:6492:3:89:0,-47.0852,-576.055	0/1:421:228,193:228:8192:193:6830:-487.915,0,-610.538	0/1:236:145,91:145:5192:91:3217:-218.697,0,-396.348	0/0:308:307,1:307:11008:1:36:0,-89.119,-986.87	0/1:367:182,185:182:6512:185:6565:-480.423,0,-475.686	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:163:163,0:163:5860:0:0:0,-49.0679,-527.507	0/1:63:34,29:34:1220:29:998:-71.1608,0,-91.1419	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:257:257,0:257:9228:0:0:0,-77.3647,-830.42	0/1:119:56,63:56:2000:63:2240:-166.037,0,-144.451	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:27:20,7:20:720:7:252:-14.9011,0,-57.001	0/1:80:48,32:48:1724:32:1121:-77.1078,0,-131.363	0/0:172:172,0:172:6164:0:0:0,-51.7772,-554.858	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:570:280,287:280:10043:287:10013:-730.055,0,-732.243	0/1:501:298,203:298:10696:203:7203:-497.496,0,-811.709	0/0:93:92,1:92:3300:1:36:0,-24.3975,-293.62	0/0:179:178,1:178:6364:1:36:0,-50.2861,-569.25	0/0:463:456,7:456:16325:7:248:0,-116.713,-1446.2	0/0:415:413,2:413:14820:2:68:0,-118.47,-1327.06	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.608	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:153:153,0:153:5477:0:0:0,-46.0576,-492.926	0/1:67:41,26:41:1460:26:928:-63.6692,0,-111.527	0/1:156:93,63:93:3325:63:2213:-152.404,0,-252.506	0/0:173:173,0:173:6204:0:0:0,-52.0782,-558.455	0/0:162:162,0:162:5788:0:0:0,-48.7669,-521.023	0/0:544:544,0:544:19486:0:0:0,-163.76,-1753.27	0/0:151:150,1:150:5387:1:32:0,-42.2562,-480.983	0/0:233:232,1:232:8331:1:36:0,-66.5417,-746.193	0/1:8:2,6:2:72:6:201:-16.0085,0,-4.42848	0/0:233:232,1:232:8332:1:36:0,-66.5417,-746.283	0/1:212:119,93:119:4233:93:3247:-228.603,0,-317.332	0/0:575:571,1:571:20459:1:36:0,-168.951,-1836.06	0/0:143:143,0:143:5120:0:0:0,-43.0473,-460.942	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.995	0/1:166:90,76:90:3208:76:2686:-192.01,0,-238.973	0/1:269:136,133:136:4884:133:4722:-344.141,0,-358.734	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.06	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.935	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:94:53,41:53:1887:41:1421:-99.1176,0,-141.621	0/1:130:51,79:51:1815:79:2733:-207.044,0,-124.497	0/0:466:465,1:465:16658:1:36:0,-136.682,-1495.28	0/0:243:243,0:243:8699:0:0:0,-73.1503,-782.901
chr04	27941630	.	AC	GT,AT	150529	PASS	AB=0.493748,0.504562;ABP=4.01495,3.54528;AC=142,44;AF=0.763441,0.236559;AN=186;AO=5179,1519;CIGAR=2X,1M1X;DP=6710;DPB=6710;DPRA=36.4565,1.06074;EPP=11.1113,39.1505;EPPR=9.52472;GTI=1;LEN=2,1;MEANALT=1.65217,2.07692;MQM=32.6524,49.6228;MQMR=60;NS=93;NUMALT=2;ODDS=0.995631;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=183299,54291;QR=97;RO=3;RPL=5179,1519;RPP=11249.1,3301.48;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=2659,839;SAP=11.1113,39.1505;SAR=2520,680;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,14,29:0:0:14,29:491,1029:-120.505,-82.0953,-77.8809,-38.7509,0,-30.0211	1/1:23:0,23,0:0:0:23,0:826,0:-71.9628,-6.92369,0,-71.9628,-6.92369,-71.9628	1/1:66:0,65,1:0:0:65,1:2298,36:-201.432,-19.567,0,-198.53,-16.3094,-198.229	1/1:146:0,144,2:0:0:144,2:5120,72:-347.552,-43.3483,0,-341.681,-37.1186,-341.079	1/2:31:0,12,19:0:0:12,19:432,669:-78.2621,-52.9125,-49.3002,-25.6461,0,-19.9265	2/2:13:0,1,12:0:0:1,12:36,432:-38.1454,-35.2252,-34.9242,-3.61236,-0.334623,0	1/2:50:0,21,28:0:0:21,28:754,1004:-122.171,-81.414,-75.0924,-40.7052,0,-32.2764	1/2:93:0,26,67:0:0:26,67:915,2386:-264.392,-192.127,-184.3,-72.6093,0,-52.4403	1/1:44:0,44,0:0:0:44,0:1530,0:-135.357,-13.2453,0,-135.357,-13.2453,-135.357	1/1:44:0,43,0:0:0:43,0:1525,0:-110.263,-12.9443,0,-110.263,-12.9443,-110.263	1/2:88:0,57,31:0:0:57,31:1999,1112:-220.241,-88.8815,-71.7228,-131.689,0,-122.357	1/1:115:0,115,0:0:0:115,0:4070,0:-357.708,-34.6185,0,-357.708,-34.6185,-357.708	1/1:74:0,74,0:0:0:74,0:2601,0:-228.42,-22.2762,0,-228.42,-22.2762,-228.42	1/1:151:0,151,0:0:0:151,0:5319,0:-356.162,-45.4555,0,-356.162,-45.4555,-356.162	1/1:146:0,146,0:0:0:146,0:5182,0:-377.152,-43.9504,0,-377.152,-43.9504,-377.152	1/2:120:0,68,52:0:0:68,52:2440,1853:-306.839,-148.455,-127.985,-158.709,0,-143.056	1/2:55:0,25,30:0:0:25,30:882,1068:-156.848,-86.7393,-79.2136,-70.4579,0,-61.427	1/1:39:0,39,0:0:0:39,0:1371,0:-120.655,-11.7402,0,-120.655,-11.7402,-120.655	1/2:52:0,21,31:0:0:21,31:739,1105:-147.583,-88.7502,-82.4286,-59.1797,0,-49.8478	1/2:115:0,75,40:0:0:75,40:2662,1436:-266.4,-116.296,-93.7188,-150.424,0,-138.383	1/2:103:0,55,48:0:0:55,48:1954,1724:-268.557,-139.224,-122.668,-129.659,0,-115.21	1/1:17:0,17,0:0:0:17,0:601,0:-37.7482,-5.11751,0,-37.7482,-5.11751,-37.7482	1/2:66:0,40,26:0:0:40,26:1392,936:-155.627,-76.3064,-64.2652,-79.638,0,-71.8113	1/2:41:0,26,15:0:0:26,15:920,540:-97.2174,-43.0511,-35.2243,-54.4851,0,-49.9697	1/1:60:0,60,0:0:0:60,0:2143,0:-153.229,-18.0618,0,-153.229,-18.0618,-153.229	1/2:120:0,63,57:0:0:63,57:2229,2044:-288.463,-165.202,-146.237,-123.566,0,-106.407	1/2:158:0,86,71:0:0:86,71:3042,2544:-397.254,-204.855,-178.966,-192.51,0,-171.137	1/2:52:0,22,30:0:0:22,30:777,1072:-134.782,-85.815,-79.1924,-49.2771,0,-40.2462	1/1:93:0,93,0:0:0:93,0:3327,0:-208.409,-27.9958,0,-208.409,-27.9958,-208.409	1/2:52:0,25,27:0:0:25,27:880,968:-123.371,-77.2194,-69.6936,-46.4434,0,-38.3156	1/2:83:0,48,35:0:0:48,35:1692,1247:-206.995,-101.456,-87.0067,-105.861,0,-95.3251	1/2:6:0,2,4:0:0:2,4:72,144:-16.2844,-11.9254,-11.3233,-4.66196,0,-3.45784	1/2:5:0,4,1:0:0:4,1:142,36:-11.9599,-3.29214,-2.08802,-9.01038,0,-8.70935	1/1:4:0,4,0:0:0:4,0:142,0:-12.8682,-1.20412,0,-12.8682,-1.20412,-12.8682	2/2:2:0,0,2:0:0:0,2:0,72:-6.81953,-6.81953,-6.81953,-0.60206,-0.60206,0	1/1:1:0,1,0:0:0:1,0:26,0:-2.45477,-0.30103,0,-2.45477,-0.30103,-2.45477	1/1:122:0,121,1:0:0:121,1:4283,36:-268.746,-36.4246,0,-265.825,-33.1469,-265.524	1/2:28:0,16,12:0:0:16,12:565,424:-68.909,-34.3181,-29.5016,-34.9071,0,-31.2948	1/1:34:0,34,0:0:0:34,0:1196,0:-105.748,-10.235,0,-105.748,-10.235,-105.748	.:.:.:.:.:.:.:.	1/1:83:0,82,1:0:0:82,1:2919,36:-178.078,-24.6845,0,-175.144,-21.3923,-174.843	1/2:54:0,28,26:0:0:28,26:1000,927:-130.653,-74.6773,-66.2484,-56.2814,0,-48.4546	1/2:158:0,82,76:0:0:82,76:2915,2723:-384.469,-217.673,-192.988,-167.104,0,-144.225	1/2:125:0,62,63:0:0:62,63:2182,2264:-326.81,-184.279,-165.615,-142.854,0,-123.889	1/1:129:1,128,0:1:36:128,0:4489,0:-337.752,-35.2346,0,-338.053,-38.5318,-340.991	1/1:30:0,30,0:0:0:30,0:1075,0:-69.2889,-9.0309,0,-69.2889,-9.0309,-69.2889	1/1:38:0,38,0:0:0:38,0:1324,0:-116.55,-11.4391,0,-116.55,-11.4391,-116.55	1/2:133:0,73,60:0:0:73,60:2600,2143:-328.601,-173.452,-151.476,-155.466,0,-137.404	1/2:55:0,31,24:0:0:31,24:1096,853:-141.285,-69.3819,-60.05,-72.229,0,-65.0042	1/1:83:0,82,1:0:0:82,1:2886,36:-199.839,-24.6845,0,-197.271,-21.7979,-196.97	1/2:34:0,16,18:0:0:16,18:576,644:-82.9353,-52.2789,-47.4624,-30.9536,0,-25.5351	1/1:4:0,4,0:0:0:4,0:144,0:-11.8279,-1.20412,0,-11.8279,-1.20412,-11.8279	1/1:16:0,16,0:0:0:16,0:561,0:-49.8583,-4.81648,0,-49.8583,-4.81648,-49.8583	1/2:27:0,9,18:0:0:9,18:324,648:-70.0752,-53.0097,-50.3004,-17.348,0,-11.9295	1/1:3:0,3,0:0:0:3,0:108,0:-9.85882,-0.90309,0,-9.85882,-0.90309,-9.85882	1/1:117:0,116,1:0:0:116,1:4083,36:-274.375,-34.9195,0,-271.441,-31.6273,-271.14	1/2:31:0,13,18:0:0:13,18:468,625:-75.9283,-50.4528,-46.5394,-25.7653,0,-20.3467	1/1:3:0,3,0:0:0:3,0:108,0:-6.90734,-0.90309,0,-6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chr04	27943486	.	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chr04	27978968	.	TTTTCCACCAAA	AAATCACCAAA,TTTGCCACCAAA	117656	PASS	AB=0.498048,0.490798;ABP=3.12899,5.64804;AC=145,43;AF=0.771277,0.228723;AN=188;AO=6010,1775;CIGAR=3X1M1D7M,3M1X8M;DP=7838;DPB=7334.75;DPRA=0,1.19122;EPP=13053.6,3857.37;EPPR=7.35324;GTI=0;LEN=11,1;MEANALT=1.97872,2.7234;MQM=29.3722,59.7076;MQMR=48;NS=94;NUMALT=2;ODDS=0.223369;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=176355,63390;QR=59;RO=2;RPL=6010,1775;RPP=13053.6,3857.37;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=6010,1775;SAP=13053.6,3857.37;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,11,11:0:0:11,11:325,396:-55.5852,-32.6714,-29.3601,-23.2264,0,-19.9151	1/1:62:0,61,0:0:0:61,0:1824,0:-147.725,-18.3628,0,-147.725,-18.3628,-147.725	1/1:154:0,150,2:0:0:150,2:4485,72:-362.987,-45.1545,0,-357.111,-39.2447,-356.509	1/1:189:0,188,1:0:0:188,1:5447,36:-439.285,-56.5936,0,-436.347,-53.2964,-436.046	1/2:66:0,34,32:0:0:34,32:1018,1144:-165.771,-93.6366,-83.4015,-72.4496,0,-62.8166	1/2:54:0,25,29:0:0:25,29:750,1044:-138.709,-85.5449,-78.0192,-53.4759,0,-44.746	1/2:81:0,40,41:0:0:40,41:1161,1472:-201.993,-120.42,-108.379,-81.8817,0,-69.5395	1/2:124:0,61,61:0:0:61,61:1830,2196:-308.889,-179.111,-160.748,-129.742,0,-111.379	1/1:40:0,40,0:0:0:40,0:1198,0:-97.2603,-12.0412,0,-97.2603,-12.0412,-97.2603	1/1:63:0,63,0:0:0:63,0:1827,0:-147.637,-18.9649,0,-147.637,-18.9649,-147.637	1/2:77:0,42,34:0:0:42,34:1210,1224:-185.024,-99.9692,-87.326,-85.1069,0,-74.8719	1/1:62:0,62,0:0:0:62,0:1836,0:-148.882,-18.6639,0,-148.882,-18.6639,-148.882	1/1:59:0,59,0:0:0:59,0:1755,0:-142.245,-17.7608,0,-142.245,-17.7608,-142.245	1/1:89:0,89,0:0:0:89,0:2649,0:-214.627,-26.7917,0,-214.627,-26.7917,-214.627	1/1:51:0,51,0:0:0:51,0:1451,0:-117.184,-15.3525,0,-117.184,-15.3525,-117.184	1/2:50:0,28,22:0:0:28,22:834,784:-123.302,-64.2579,-55.8291,-59.3615,0,-52.7388	1/2:66:0,33,33:0:0:33,33:977,1180:-165.591,-96.5741,-86.6401,-69.3289,0,-59.3949	1/1:60:0,59,0:0:0:59,0:1760,0:-142.406,-17.7608,0,-142.406,-17.7608,-142.406	1/2:44:0,19,25:0:0:19,25:565,888:-112.638,-72.6887,-66.9692,-40.2542,0,-32.7285	1/2:151:0,84,67:0:0:84,67:2423,2408:-366.925,-196.793,-171.507,-170.446,0,-150.277	1/2:95:0,41,53:0:0:41,53:1214,1904:-241.37,-155.45,-143.108,-86.0149,0,-70.0603	1/1:112:0,112,0:0:0:112,0:3243,0:-261.814,-33.7154,0,-261.814,-33.7154,-261.814	1/2:45:0,24,21:0:0:24,21:695,748:-110.144,-61.3237,-54.0989,-49.1311,0,-42.8095	1/2:96:0,58,37:0:0:58,37:1728,1324:-230.429,-107.961,-90.501,-122.433,0,-111.295	1/1:41:0,41,0:0:0:41,0:1221,0:-99.2843,-12.3422,0,-99.2843,-12.3422,-99.2843	1/2:239:1,120,115:1:28:120,115:3474,4076:-573.823,-329.89,-295.927,-242.062,0,-209.606	1/2:175:0,96,76:0:0:96,76:2863,2732:-425.337,-222.518,-193.619,-202.815,0,-179.936	1/2:32:0,22,10:0:0:22,10:660,345:-75.1403,-28.3705,-21.7479,-47.0912,0,-44.0809	1/1:201:0,201,0:0:0:201,0:5817,0:-469.384,-60.507,0,-469.384,-60.507,-469.384	1/2:129:0,55,71:0:0:55,71:1636,2535:-322.567,-206.647,-190.091,-115.871,0,-94.4979	1/2:96:0,53,42:0:0:53,42:1532,1500:-229.922,-122.255,-106.3,-107.729,0,-95.0854	1/2:5:0,2,3:0:0:2,3:57,108:-13.1168,-9.17208,-8.57002,-4.2416,0,-3.33851	1/2:16:0,5,11:0:0:5,11:150,396:-43.2845,-32.6714,-31.1663,-10.9111,0,-7.59978	1/1:2:0,2,0:0:0:2,0:51,0:-4.27489,-0.60206,0,-4.27489,-0.60206,-4.27489	1/2:13:0,10,3:0:0:10,3:300,104:-30.015,-8.79127,-5.78097,-21.5523,0,-20.6492	1/1:11:0,11,0:0:0:11,0:330,0:-26.9919,-3.31133,0,-26.9919,-3.31133,-26.9919	1/1:170:0,169,0:0:0:169,0:4826,0:-388.879,-50.8741,0,-388.879,-50.8741,-388.879	1/2:219:0,110,107:0:0:110,107:3291,3806:-543.468,-310.213,-277.1,-233.287,0,-201.077	1/1:66:0,66,0:0:0:66,0:1970,0:-159.701,-19.868,0,-159.701,-19.868,-159.701	1/1:6:0,6,0:0:0:6,0:180,0:-14.8455,-1.80618,0,-14.8455,-1.80618,-14.8455	1/1:188:0,178,10:0:0:178,10:5331,360:-431.642,-53.5833,0,-402.263,-23.8493,-399.253	1/2:44:0,16,25:0:0:16,25:480,892:-106.84,-72.8157,-67.9992,-34.0716,0,-26.5458	1/2:129:0,56,73:0:0:56,73:1676,2604:-331.497,-212.634,-195.776,-119.171,0,-97.1954	1/2:73:0,40,33:0:0:40,33:1139,1184:-176.508,-96.9206,-84.8794,-79.8991,0,-69.9651	1/1:50:0,50,0:0:0:50,0:1448,0:-117.046,-15.0515,0,-117.046,-15.0515,-117.046	1/1:77:0,77,0:0:0:77,0:2223,0:-179.487,-23.1793,0,-179.487,-23.1793,-179.487	1/1:75:0,75,0:0:0:75,0:2245,0:-182.057,-22.5773,0,-182.057,-22.5773,-182.057	1/2:153:1,69,80:1:31:69,80:1999,2852:-370.162,-230.044,-211.76,-137.938,0,-116.344	1/2:78:0,40,37:0:0:40,37:1156,1309:-187.81,-106.686,-94.6445,-81.1518,0,-70.0137	1/1:91:0,91,0:0:0:91,0:2623,0:-211.838,-27.3937,0,-211.838,-27.3937,-211.838	1/2:109:0,74,34:0:0:74,34:2134,1216:-249.084,-99.2312,-76.955,-149.917,0,-139.682	1/2:10:0,2,8:0:0:2,8:58,288:-27.9019,-23.8453,-23.2432,-4.3365,0,-1.92826	1/1:186:0,186,0:0:0:186,0:5561,0:-450.484,-55.9916,0,-450.484,-55.9916,-450.484	1/2:66:0,29,37:0:0:29,37:837,1319:-166.721,-107.873,-99.1432,-59.1495,0,-48.0114	1/1:6:0,6,0:0:0:6,0:180,0:-14.8455,-1.80618,0,-14.8455,-1.80618,-14.8455	1/1:120:0,120,0:0:0:120,0:3595,0:-291.374,-36.1236,0,-291.374,-36.1236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chr04	28041150	.	A	C	14649.2	PASS	AB=0.375137;ABP=374.468;AC=43;AF=0.228723;AN=188;AO=1036;CIGAR=1X;DP=7898;DPB=7898;DPRA=0.630134;EPP=2132.7;EPPR=14418.9;GTI=6;LEN=1;MEANALT=1;MQM=45.0029;MQMR=59.2858;NS=94;NUMALT=1;ODDS=0.93225;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36984;QR=244528;RO=6857;RPL=14;RPP=2132.7;RPPR=14418.9;RPR=1022;RUN=1;SAF=0;SAP=2252.66;SAR=1036;SRF=0;SRP=14892.8;SRR=6857;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:3,4:3:108:4:144:-11.0223,0,-7.96796	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.491	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.619	0/0:385:384,0:384:13650:0:0:0,-115.596,-1227.39	0/1:23:12,11:12:432:11:396:-28.5615,0,-31.5229	0/1:10:4,6:4:144:6:216:-16.49,0,-10.2573	0/1:49:16,33:16:568:33:1176:-89.9936,0,-36.7014	0/1:87:57,30:57:2004:30:1076:-69.7311,0,-153.986	0/0:95:95,0:95:3407:0:0:0,-28.5978,-305.641	0/0:106:106,0:106:3742:0:0:0,-31.9092,-335.238	0/1:40:27,13:27:972:13:464:-29.4957,0,-75.7117	0/0:111:111,0:111:3939:0:0:0,-33.4143,-354.167	0/0:83:82,0:82:2914:0:0:0,-24.6845,-261.812	0/0:56:56,0:56:1966:0:0:0,-16.8577,-177.159	0/0:100:99,1:99:3502:1:36:0,-26.5545,-311.569	0/1:57:25,32:25:892:32:1152:-84.8102,0,-63.441	0/1:39:15,24:15:532:24:860:-64.9283,0,-36.4729	0/0:36:36,0:36:1268:0:0:0,-10.8371,-114.324	0/1:17:10,7:10:356:7:243:-16.811,0,-27.2007	0/1:126:91,35:91:3259:35:1256:-72.1072,0,-255.502	0/1:160:124,36:124:4415:36:1292:-66.8282,0,-349.261	0/0:483:483,0:483:17254:0:0:0,-145.397,-1551.83	0/1:55:41,14:41:1472:14:504:-28.5095,0,-116.219	0/1:31:9,22:9:324:22:788:-60.9491,0,-20.1739	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.671	0/1:262:172,90:172:6172:90:3200:-204.371,0,-476.326	0/1:152:102,50:102:3640:50:1773:-111.919,0,-281.633	0/1:40:19,21:19:676:21:739:-53.9377,0,-49.1268	0/0:337:337,0:337:12013:0:0:0,-101.447,-1079.98	0/1:102:55,47:55:1958:47:1675:-118.236,0,-145.744	0/1:75:45,30:45:1599:30:1072:-72.31,0,-121.577	0/1:5:2,3:2:72:3:108:-8.43069,0,-5.33157	0/1:10:9,1:9:320:1:36:-0.538215,0,-26.0728	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:1:0,1:0:0:1:36:-3.54852,-0.30103,0	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:246:246,0:246:8765:0:0:0,-74.0534,-788.722	0/1:119:68,51:68:2416:51:1832:-126.13,0,-181.712	0/0:41:40,1:40:1423:1:36:0,-8.79371,-124.755	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:107:105,2:105:3767:2:72:0,-25.468,-332.17	0/1:48:28,20:28:1008:20:716:-49.4753,0,-76.5869	0/1:64:52,12:52:1872:12:420:-18.3945,0,-149.303	0/1:59:26,33:26:932:33:1176:-86.5996,0,-66.4381	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.71	0/0:101:101,0:101:3611:0:0:0,-30.404,-324.725	0/0:81:81,0:81:2907:0:0:0,-24.3834,-261.75	0/1:80:54,26:54:1923:26:936:-59.3077,0,-148.881	0/1:88:67,21:67:2391:21:752:-40.6304,0,-188.662	0/0:139:139,0:139:4955:0:0:0,-41.8432,-446.031	0/1:83:46,37:46:1652:37:1328:-92.1251,0,-122.702	0/1:8:7,1:7:252:1:36:-1.14028,0,-20.6207	0/0:95:95,0:95:3367:0:0:0,-28.5978,-303.058	0/1:23:16,7:16:563:7:252:-15.7868,0,-44.0244	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.2724	0/0:158:158,0:158:5635:0:0:0,-47.5627,-506.196	0/0:19:18,1:18:648:1:36:0,-2.17105,-55.002	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/1:14:7,7:7:248:7:244:-17.5075,0,-18.4498	0/1:40:23,17:23:828:17:604:-41.5962,0,-62.8029	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.734	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:208:115,93:115:4117:93:3308:-231.341,0,-307.823	0/1:115:78,37:78:2804:37:1324:-83.2121,0,-217.962	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.381	0/0:101:101,0:101:3615:0:0:0,-30.404,-325.301	0/0:140:140,0:140:5015:0:0:0,-42.1442,-450.484	0/0:160:160,0:160:5726:0:0:0,-48.1648,-515.321	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.462	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2455	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.166	0/1:7:6,1:6:212:1:36:-1.44131,0,-17.2988	0/1:45:35,10:35:1239:10:356:-18.4087,0,-98.2673	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.052	0/0:104:104,0:104:3692:0:0:0,-31.3071,-331.746	0/0:144:144,0:144:5149:0:0:0,-43.3483,-463.433	0/0:55:53,0:53:1890:0:0:0,-15.9546,-168.956	0/0:94:93,0:93:3299:0:0:0,-27.9958,-296.804	0/1:27:24,3:24:856:3:108:-1.80803,0,-69.2333	0/0:104:104,0:104:3701:0:0:0,-31.3071,-332.884	0/1:67:50,17:50:1785:17:608:-34.111,0,-140.611	0/0:211:211,0:211:7510:0:0:0,-63.5173,-675.609	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.206	0/0:69:69,0:69:2450:0:0:0,-20.7711,-220.657	0/1:56:30,26:30:1061:26:906:-64.0283,0,-78.8967	0/1:129:79,50:79:2815:50:1796:-120.654,0,-214.732	0/0:42:41,1:41:1463:1:36:0,-9.74049,-128.928	0/0:98:98,0:98:3495:0:0:0,-29.5009,-314.582	0/0:80:80,0:80:2845:0:0:0,-24.0824,-255.571	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.8254	0/1:52:31,21:31:1098:21:756:-51.7682,0,-83.4301	0/1:64:34,30:34:1220:30:1068:-75.9867,0,-90.8262	0/0:149:149,0:149:5294:0:0:0,-44.8535,-476.334	0/0:112:112,0:112:3982:0:0:0,-33.7154,-358.204
chr04	28045651	.	A	T	20713.8	PASS	AB=0.430636;ABP=176.527;AC=43;AF=0.228723;AN=188;AO=1804;CIGAR=1X;DP=9971;DPB=9971;DPRA=1.03676;EPP=3920.35;EPPR=17711.4;GTI=1;LEN=1;MEANALT=1.01961;MQM=32.9446;MQMR=47.1623;NS=94;NUMALT=1;ODDS=0.921029;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64675;QR=291340;RO=8163;RPL=5;RPP=3877.04;RPPR=8795.04;RPR=1799;RUN=1;SAF=5;SAP=3877.04;SAR=1799;SRF=1205;SRP=8807.28;SRR=6958;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:19,13:19:684:13:464:-26.8878,0,-50.7487	0/0:113:113,0:113:4047:0:0:0,-34.0164,-358.877	0/0:193:193,0:193:6860:0:0:0,-58.0988,-607.996	0/0:211:210,1:210:7509:1:32:0,-60.5711,-659.488	0/1:80:36,44:36:1296:44:1580:-100.512,0,-90.3965	0/1:57:30,27:30:1080:27:972:-60.6722,0,-79.1327	0/1:94:41,53:41:1460:53:1908:-121.637,0,-101.281	0/1:119:51,68:51:1806:68:2436:-155.935,0,-125.393	0/0:71:69,2:69:2448:2:72:0,-15.3166,-211.151	0/0:47:47,0:47:1633:0:0:0,-14.1484,-143.826	0/1:79:35,44:35:1260:44:1580:-99.2761,0,-88.0103	0/0:88:88,0:88:3143:0:0:0,-26.4906,-279.516	0/0:69:69,0:69:2459:0:0:0,-20.7711,-218.908	0/0:52:52,0:52:1868:0:0:0,-15.6536,-165.221	0/0:75:75,0:75:2663:0:0:0,-22.5772,-235.428	0/1:54:29,25:29:1028:25:900:-54.334,0,-74.9117	0/1:36:19,17:19:676:17:608:-37.304,0,-49.706	0/0:33:33,0:33:1184:0:0:0,-9.93399,-105.708	0/1:42:26,16:26:924:16:572:-34.2694,0,-69.4687	0/1:206:111,95:111:3979:95:3393:-202.126,0,-290.831	0/1:164:82,82:82:2927:82:2936:-180.523,0,-210.85	0/0:130:130,0:130:4646:0:0:0,-39.1339,-412.801	0/1:154:74,80:74:2630:80:2868:-176.545,0,-186.021	0/1:69:28,41:28:1008:41:1463:-93.659,0,-69.1806	0/0:98:98,0:98:3490:0:0:0,-29.5009,-310.596	0/1:370:281,89:281:10057:89:3192:-134.39,0,-786.947	0/1:228:106,122:106:3778:122:4369:-270.911,0,-267.429	0/1:27:15,12:15:540:12:428:-25.6743,0,-39.5102	0/0:476:476,0:476:17004:0:0:0,-143.29,-1515.21	0/1:139:110,29:110:3920:29:1040:-38.7892,0,-306.276	0/1:131:82,49:82:2923:49:1749:-97.6204,0,-219.536	0/1:12:6,6:6:216:6:216:-13.5676,0,-15.96	0/1:23:10,13:10:351:13:468:-28.9097,0,-24.1941	0/0:14:14,0:14:504:0:0:0,-4.21442,-44.996	0/1:16:5,11:5:180:11:396:-27.0598,0,-11.4574	0/0:41:41,0:41:1464:0:0:0,-12.3422,-129.893	0/0:446:446,0:446:15887:0:0:0,-134.259,-1419.46	0/1:71:35,36:35:1243:36:1296:-79.6929,0,-88.5942	0/0:52:52,0:52:1860:0:0:0,-15.6536,-165.889	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.3696	0/0:136:134,2:134:4746:2:72:0,-35.0052,-416.072	0/1:25:18,7:18:631:7:252:-12.4655,0,-48.8963	0/1:170:82,88:82:2940:88:3160:-193.888,0,-210.447	0/1:86:47,39:47:1684:39:1404:-84.7237,0,-122.743	0/0:56:56,0:56:1991:0:0:0,-16.8577,-176.09	0/0:227:227,0:227:8111:0:0:0,-68.3338,-721.835	0/0:127:127,0:127:4514:0:0:0,-38.2308,-400.759	0/1:94:49,45:49:1760:45:1589:-93.5561,0,-127.82	0/1:53:19,34:19:684:34:1217:-78.3881,0,-44.6134	0/0:102:102,0:102:3660:0:0:0,-30.7051,-322.547	0/1:229:177,52:177:6323:52:1868:-75.4853,0,-496.47	0/1:19:12,7:12:432:7:252:-14.0698,0,-32.9684	0/0:149:148,1:148:5304:1:36:0,-42.2948,-468.257	0/1:128:97,31:97:3492:31:1112:-48.8276,0,-273.632	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.3817	0/0:190:186,4:186:6646:4:144:0,-45.6382,-577.379	0/1:30:15,15:15:532:15:540:-33.4506,0,-38.162	0/0:34:34,0:34:1224:0:0:0,-10.235,-109.334	0/1:22:13,9:13:468:9:324:-18.3928,0,-35.4757	0/1:85:54,31:54:1924:31:1116:-61.9321,0,-144.62	0/0:98:97,1:97:3472:1:36:0,-26.3773,-304.474	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.0936	0/1:259:179,80:179:6369:80:2872:-145.798,0,-488.484	0/1:117:56,61:56:1987:61:2184:-136.221,0,-140.682	0/0:52:52,0:52:1853:0:0:0,-15.6536,-164.719	0/0:68:68,0:68:2419:0:0:0,-20.47,-211.09	0/0:184:182,2:182:6482:2:72:0,-49.2432,-567.736	0/0:308:305,3:305:10900:3:108:0,-83.971,-952.141	0/0:43:43,0:43:1548:0:0:0,-12.9443,-136.461	0/0:74:74,0:74:2647:0:0:0,-22.2762,-235.299	0/0:160:159,0:159:5642:0:0:0,-47.8638,-505.649	0/1:30:11,19:11:396:19:680:-44.0236,0,-26.443	0/1:112:71,41:71:2544:41:1472:-82.6124,0,-192.502	0/0:99:99,0:99:3529:0:0:0,-29.802,-313.302	0/0:225:225,0:225:8049:0:0:0,-67.7317,-710.902	0/0:156:156,0:156:5596:0:0:0,-46.9607,-494.39	0/0:105:105,0:105:3759:0:0:0,-31.6081,-334.301	0/0:103:103,0:103:3662:0:0:0,-31.0061,-323.904	0/1:20:5,15:5:180:15:540:-36.7609,0,-10.1992	0/0:116:116,0:116:4147:0:0:0,-34.9195,-368.635	0/1:119:67,52:67:2400:52:1872:-112.702,0,-176.642	0/0:178:178,0:178:6338:0:0:0,-53.5833,-558.729	0/0:41:41,0:41:1433:0:0:0,-12.3422,-127.064	0/0:69:68,0:68:2435:0:0:0,-20.47,-214.455	0/1:44:19,25:19:680:25:900:-55.8723,0,-47.5338	0/1:111:54,56:54:1926:56:2008:-122.032,0,-137.395	0/0:20:20,0:20:716:0:0:0,-6.0206,-63.7689	0/0:69:69,0:69:2464:0:0:0,-20.7711,-218.222	0/0:76:76,0:76:2720:0:0:0,-22.8783,-241.797	0/0:50:50,0:50:1778:0:0:0,-15.0515,-158.02	0/1:105:57,48:57:2030:48:1728:-101.835,0,-148.436	0/1:91:30,61:30:1068:61:2179:-141.361,0,-66.8081	0/0:179:178,0:178:6341:0:0:0,-53.5833,-559.262	0/0:87:87,0:87:3085:0:0:0,-26.1896,-271.974
chr04	28080718	.	T	C	11270	PASS	AB=0.484072;ABP=6.19232;AC=47;AF=0.25;AN=188;AO=707;CIGAR=1X;DP=3329;DPB=3329;DPRA=0.953797;EPP=1538.24;EPPR=5646.75;GTI=5;LEN=1;MEANALT=1.02041;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=2.70532;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25212;QR=93976;RO=2619;RPL=707;RPP=1538.24;RPPR=5646.75;RPR=0;RUN=1;SAF=0;SAP=1538.24;SAR=707;SRF=0;SRP=5690.1;SRR=2619;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:17,8:17:608:8:288:-18.7417,0,-47.5263	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:25:9,15:9:324:15:523:-39.9543,0,-22.0562	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:41:40,0:40:1432:0:0:0,-12.0412,-128.818	0/1:40:22,18:22:792:18:648:-46.6107,0,-59.5645	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:34:12,22:12:428:22:788:-61.0098,0,-28.6238	0/1:15:11,4:11:396:4:140:-8.42913,0,-31.4673	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:41:16,25:16:576:25:894:-68.4376,0,-39.8328	0/1:58:27,31:27:953:31:1093:-81.2179,0,-68.6236	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	0/1:15:10,5:10:356:5:180:-12.0366,0,-27.8658	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:67:29,38:29:1040:38:1360:-102.532,0,-73.7454	0/1:57:23,34:23:828:34:1216:-92.5879,0,-57.6854	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:56:25,31:25:896:31:1097:-82.1812,0,-64.1027	0/1:34:14,20:14:504:20:716:-54.5327,0,-35.4631	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.514	0/1:33:15,18:15:540:18:644:-48.3566,0,-39.0025	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:61:60,1:60:2152:1:36:0,-14.7646,-190.349	0/1:20:8,12:8:288:12:428:-32.8382,0,-20.2468	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:36:21,15:21:756:15:540:-38.0995,0,-57.5301	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:58:29,29:29:1044:29:1036:-76.0942,0,-76.8151	0/1:14:3,11:3:108:11:381:-30.4062,0,-5.86075	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:41:31,10:31:1101:10:360:-20.4021,0,-87.0561	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:65:64,1:64:2300:1:36:0,-15.9687,-203.662	0/1:20:8,12:8:288:12:415:-31.6589,0,-20.2468	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:32:16,16:16:576:16:557:-40.8226,0,-42.542	0/0:66:65,1:65:2336:1:36:0,-16.2697,-206.901	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:92:43,49:43:1548:49:1726:-127.926,0,-111.918	0/1:45:33,12:33:1184:12:432:-25.6748,0,-93.322	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:45:40,5:40:1440:5:180:-3.00572,0,-116.351	0/0:56:55,1:55:1972:1:36:0,-13.2594,-174.157	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	0/1:57:27,30:27:972:30:1072:-79.6337,0,-70.6392	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:80:79,0:79:2825:0:0:0,-23.7814,-254.127	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:57:40,17:40:1432:17:612:-38.2547,0,-112.019	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:36:20,16:20:716:16:566:-40.4331,0,-53.9306	0/1:78:40,38:40:1440:38:1364:-99.5804,0,-106.417	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:71:30,41:30:1076:41:1472:-111.403,0,-75.7797	0/1:46:17,29:17:608:29:1040:-80.067,0,-41.2046	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399
chr04	28179090	.	T	A	45640.4	PASS	AB=0.507972;ABP=5.95325;AC=46;AF=0.244681;AN=188;AO=2718;CIGAR=1X;DP=10639;DPB=10639;DPRA=1.252;EPP=5905.07;EPPR=17166.3;GTI=0;LEN=1;MEANALT=1.11538;MQM=59.9794;MQMR=59.997;NS=94;NUMALT=1;ODDS=0.937725;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96726;QR=279077;RO=7908;RPL=0;RPP=5905.07;RPPR=17166.3;RPR=2718;RUN=1;SAF=0;SAP=5905.07;SAR=2718;SRF=0;SRP=17175;SRR=7908;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:22,28:22:788:28:983:-73.731,0,-56.1933	0/0:153:152,0:152:5316:0:0:0,-45.7566,-478.224	0/0:168:167,1:167:5892:1:36:0,-46.9748,-526.797	0/0:266:266,0:266:9422:0:0:0,-80.074,-847.953	0/1:127:63,64:63:2256:64:2283:-167.501,0,-165.072	0/1:68:36,32:36:1276:32:1126:-81.1766,0,-94.673	0/1:255:129,126:129:4569:126:4478:-326.429,0,-334.614	0/1:129:45,84:45:1584:84:2998:-231.192,0,-104.015	0/0:85:85,0:85:3010:0:0:0,-25.5875,-271.132	0/0:151:151,0:151:5334:0:0:0,-45.4555,-480.198	0/1:49:28,21:28:969:21:756:-53.6168,0,-72.7689	0/1:61:28,33:28:980:33:1157:-86.0716,0,-70.1473	0/0:74:74,0:74:2602:0:0:0,-22.2762,-234.43	0/0:54:54,0:54:1904:0:0:0,-16.2556,-171.638	0/0:49:49,0:49:1703:0:0:0,-14.7505,-153.552	0/1:66:31,35:31:1073:35:1248:-92.7569,0,-77.0077	0/1:64:30,34:30:1059:34:1212:-90.1204,0,-76.3545	0/0:59:59,0:59:2066:0:0:0,-17.7608,-186.21	0/1:45:24,21:24:848:21:752:-54.4599,0,-63.0933	0/1:416:211,205:211:7425:205:7303:-532.094,0,-543.075	0/1:200:107,93:107:3790:93:3305:-237.463,0,-281.095	0/0:160:160,0:160:5646:0:0:0,-48.1648,-508.267	0/1:159:70,89:70:2482:89:3164:-237.12,0,-175.769	0/1:155:78,77:78:2766:77:2740:-200.177,0,-202.522	0/0:79:79,0:79:2759:0:0:0,-23.7814,-248.553	0/1:384:199,184:199:7010:184:6566:-475.367,0,-515.32	0/1:140:62,78:62:2170:78:2792:-209.376,0,-153.422	0/1:19:4,15:4:144:15:532:-42.4935,0,-7.59405	0/0:334:334,0:334:11818:0:0:0,-100.544,-1063.5	0/1:156:80,76:80:2809:76:2702:-196.463,0,-206.091	0/1:181:84,97:84:2995:97:3467:-257.755,0,-215.296	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:10:4,6:4:125:6:216:-16.7802,0,-8.54832	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:3,8:3:108:8:279:-22.1362,0,-6.76384	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:159:158,0:158:5578:0:0:0,-47.5627,-501.789	0/1:216:103,113:103:3660:113:4038:-298.585,0,-264.584	0/0:56:56,0:56:1962:0:0:0,-16.8577,-176.854	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/0:126:122,2:122:4306:2:72:0,-30.8508,-380.883	0/1:31:13,18:13:460:18:648:-49.32,0,-32.4034	0/1:180:82,96:82:2887:96:3444:-256.229,0,-206.123	0/1:66:36,30:36:1264:30:1063:-76.1118,0,-94.1946	0/0:47:47,0:47:1637:0:0:0,-14.1484,-147.616	0/0:123:123,0:123:4332:0:0:0,-37.0267,-390.061	0/0:165:165,0:165:5824:0:0:0,-49.6699,-524.281	0/1:204:102,101:102:3596:101:3590:-261.876,0,-262.419	0/1:159:71,88:71:2510:88:3144:-235.32,0,-178.289	0/0:154:154,0:154:5457:0:0:0,-46.3586,-491.263	0/1:200:103,97:103:3649:97:3444:-249.968,0,-268.41	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:215:214,0:214:7592:0:0:0,-64.4204,-682.966	0/1:72:29,43:29:1015:43:1535:-116.768,0,-69.9867	0/0:8:8,0:8:271:0:0:0,-2.40824,-24.7194	0/0:198:198,0:198:7029:0:0:0,-59.6039,-632.678	0/1:35:14,21:14:496:21:748:-57.1092,0,-34.4382	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:106:50,56:50:1761:56:1994:-147.823,0,-126.862	0/0:93:93,0:93:3262:0:0:0,-27.9958,-293.802	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:246:123,123:123:4310:123:4374:-319.782,0,-314.029	0/1:218:104,113:104:3694:113:4018:-296.123,0,-266.98	0/0:105:105,0:105:3714:0:0:0,-31.6081,-334.464	0/0:113:113,0:113:3992:0:0:0,-34.0164,-359.472	0/0:239:236,3:236:8322:3:108:0,-61.871,-738.927	0/0:206:204,2:204:7212:2:72:0,-55.1755,-642.305	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:88:88,0:88:3103:0:0:0,-26.4906,-279.498	0/0:75:75,0:75:2638:0:0:0,-22.5772,-237.668	0/1:42:18,24:18:624:24:860:-65.0786,0,-43.8409	0/1:87:49,37:49:1735:37:1309:-91.8622,0,-130.186	0/0:60:60,0:60:2114:0:0:0,-18.0618,-190.527	0/0:247:247,0:247:8680:0:0:0,-74.3544,-781.209	0/0:224:224,0:224:7915:0:0:0,-67.4307,-712.386	0/1:128:66,62:66:2344:62:2192:-159.012,0,-172.688	0/0:135:134,1:134:4674:1:36:0,-37.0408,-417.233	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:155:83,72:83:2964:72:2540:-182.154,0,-220.334	0/1:138:83,55:83:2918:55:1950:-134.232,0,-221.313	0/0:262:261,1:261:9214:1:36:0,-75.2716,-825.455	0/0:83:83,0:83:2930:0:0:0,-24.9855,-263.936	0/0:55:55,0:55:1951:0:0:0,-16.5566,-175.865	0/1:66:37,29:37:1290:29:1008:-71.1601,0,-96.5314	0/1:101:48,53:48:1716:53:1881:-139.163,0,-124.322	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:51:50,0:50:1775:0:0:0,-15.0515,-159.673	0/0:55:55,0:55:1947:0:0:0,-16.5566,-175.505	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:62:30,32:30:1064:32:1148:-84.966,0,-77.4078	0/1:54:22,32:22:774:32:1127:-85.4818,0,-53.7246	0/0:140:140,0:140:4939:0:0:0,-42.1442,-444.665	0/0:83:82,0:82:2862:0:0:0,-24.6845,-257.461
chr04	28179130	.	C	A	47254.8	PASS	AB=0.504751;ABP=4.08334;AC=46;AF=0.247312;AN=186;AO=2772;CIGAR=1X;DP=10943;DPB=10943;DPRA=1.2397;EPP=5996.3;EPPR=17620.4;GTI=0;LEN=1;MEANALT=1.01887;MQM=59.982;MQMR=59.9969;NS=93;NUMALT=1;ODDS=3.14122;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99305;QR=291724;RO=8169;RPL=2769;RPP=5996.3;RPPR=17629;RPR=3;RUN=1;SAF=0;SAP=6022.33;SAR=2772;SRF=1;SRP=17733.1;SRR=8168;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:24,26:24:856:26:936:-69.508,0,-62.3096	0/0:155:155,0:155:5531:0:0:0,-46.6596,-497.917	0/0:168:167,1:167:5943:1:36:0,-46.9748,-531.378	0/0:277:277,0:277:9882:0:0:0,-83.3853,-889.321	0/1:130:65,65:65:2325:65:2336:-171.365,0,-170.374	0/1:69:36,33:36:1288:33:1175:-85.2851,0,-95.4525	0/1:265:137,128:137:4862:128:4551:-329.984,0,-357.961	0/1:129:46,83:46:1656:83:2964:-228.141,0,-110.496	0/0:90:90,0:90:3178:0:0:0,-27.0927,-286.244	0/0:160:159,0:159:5655:0:0:0,-47.8638,-508.858	0/1:49:28,21:28:1008:21:743:-52.4429,0,-76.2859	0/1:61:28,33:28:1008:33:1184:-88.5055,0,-72.6735	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:67:31,36:31:1116:36:1288:-96.0546,0,-80.5827	0/1:61:28,33:28:1008:33:1184:-88.5055,0,-72.6735	0/0:63:63,0:63:2237:0:0:0,-18.9649,-201.592	0/1:44:23,21:23:828:21:748:-54.4,0,-61.5988	0/1:424:217,207:217:7737:207:7431:-541.195,0,-568.723	0/1:203:112,91:112:3990:91:3257:-232.241,0,-298.179	0/0:170:170,0:170:6042:0:0:0,-51.1751,-543.883	0/1:163:72,91:72:2576:91:3249:-243.562,0,-183.022	0/1:160:81,79:81:2870:79:2813:-205.24,0,-210.37	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/1:400:212,188:212:7591:188:6739:-486.169,0,-562.816	0/1:149:66,83:66:2353:83:2981:-223.667,0,-167.174	0/1:21:5,16:5:180:16:576:-45.8534,0,-10.2304	0/0:345:345,0:345:12361:0:0:0,-103.855,-1112.32	0/1:157:80,77:80:2876:77:2768:-202.099,0,-211.814	0/1:186:86,100:86:3088:100:3588:-267.135,0,-222.156	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:163:163,0:163:5810:0:0:0,-49.0679,-523.013	0/1:230:111,119:111:3946:119:4260:-314.342,0,-286.094	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:130:128,2:128:4557:2:72:0,-32.2972,-403.458	0/1:34:15,19:15:540:19:684:-51.6553,0,-38.7015	0/1:187:88,99:88:3134:99:3548:-263.236,0,-225.99	0/1:66:36,30:36:1292:30:1080:-77.6371,0,-96.7158	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:128:128,0:128:4558:0:0:0,-38.5318,-410.385	0/0:171:171,0:171:6117:0:0:0,-51.4761,-550.629	0/1:209:107,102:107:3848:102:3637:-264.617,0,-283.599	0/1:161:72,89:72:2569:89:3196:-239.391,0,-182.992	0/0:160:159,1:159:5697:1:36:0,-44.5665,-509.247	0/1:208:105,103:105:3768:103:3700:-270.587,0,-276.704	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:214:214,0:214:7658:0:0:0,-64.4204,-689.252	0/1:78:32,46:32:1133:46:1640:-124.408,0,-78.7963	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:204:204,0:204:7286:0:0:0,-61.4101,-655.79	0/1:37:16,21:16:553:21:756:-57.2291,0,-38.9559	.:.:.:.:.:.:.:.	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:110:52,58:52:1853:58:2088:-155.076,0,-133.935	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:247:124,123:124:4405:123:4401:-321.907,0,-322.267	0/1:226:110,116:110:3925:116:4164:-306.908,0,-285.409	0/0:108:108,0:108:3865:0:0:0,-32.5112,-348.043	0/0:118:118,0:118:4202:0:0:0,-35.5215,-378.359	0/0:241:238,3:238:8444:3:108:0,-62.4731,-749.891	0/0:215:214,1:214:7627:1:36:0,-61.1232,-682.868	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:90:90,0:90:3204:0:0:0,-27.0927,-288.582	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	0/1:42:19,23:19:676:23:820:-61.4793,0,-48.5247	0/1:86:48,38:48:1716:38:1357:-96.5408,0,-128.837	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.788	0/0:248:248,0:248:8872:0:0:0,-74.6554,-798.463	0/0:229:229,0:229:8204:0:0:0,-68.9359,-738.372	0/1:137:72,64:72:2569:64:2300:-165.961,0,-190.158	0/0:142:141,1:141:5045:1:36:0,-39.148,-450.596	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:155:83,72:83:2957:72:2584:-186.149,0,-219.703	0/1:144:85,59:85:3045:59:2112:-147.001,0,-230.929	0/0:274:273,1:273:9727:1:36:0,-78.8839,-871.589	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/1:70:39,31:39:1396:31:1107:-78.8681,0,-104.867	0/1:103:50,53:50:1788:53:1904:-140.632,0,-130.197	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:60:28,32:28:1004:32:1152:-85.9283,0,-72.6141	0/1:53:20,33:20:716:33:1188:-91.274,0,-48.8131	0/0:148:148,0:148:5281:0:0:0,-44.5524,-475.426	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549
chr04	28214398	.	G	A	22096.9	PASS	AB=0.471725;ABP=22.7808;AC=46;AF=0.244681;AN=188;AO=1345;CIGAR=1X;DP=6339;DPB=6339;DPRA=0.920479;EPP=2906.29;EPPR=10825.6;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.997;MQMR=59.9926;NS=94;NUMALT=1;ODDS=0.706451;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48032;QR=177473;RO=4992;RPL=1343;RPP=2906.29;RPPR=10799.6;RPR=2;RUN=1;SAF=1343;SAP=2906.29;SAR=2;SRF=4989;SRP=10817;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:17,15:17:608:15:540:-39.3036,0,-45.4191	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:93:93,0:93:3295:0:0:0,-27.9958,-296.769	0/0:200:200,0:200:7129:0:0:0,-60.206,-641.67	0/1:15:3,12:3:104:12:413:-32.9832,0,-5.18736	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	0/1:62:32,30:32:1130:30:1076:-78.489,0,-83.3431	0/1:74:33,41:33:1173:41:1458:-109.239,0,-83.5993	0/0:73:73,0:73:2546:0:0:0,-21.9752,-229.387	0/0:91:91,0:91:3233:0:0:0,-27.3937,-291.192	0/1:41:24,17:24:860:17:612:-43.0712,0,-65.3796	0/1:111:54,57:54:1913:57:2040:-150.458,0,-139.031	0/0:81:81,0:81:2871:0:0:0,-24.3834,-258.628	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:105:105,0:105:3706:0:0:0,-31.6081,-333.743	0/1:59:29,30:29:1014:30:1080:-79.7525,0,-73.8092	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/1:19:11,8:11:377:8:288:-20.5478,0,-28.5384	0/1:97:49,48:49:1752:48:1700:-124.083,0,-128.764	0/1:128:68,60:68:2417:60:2152:-155.415,0,-179.253	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:94:58,36:58:2076:36:1288:-87.9268,0,-158.814	0/1:17:6,11:6:216:11:392:-30.5025,0,-14.673	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/1:173:92,81:92:3300:81:2889:-208.168,0,-245.118	0/1:166:91,75:91:3230:75:2696:-192.91,0,-240.952	0/1:47:27,20:27:960:20:711:-50.1672,0,-72.5679	0/0:186:186,0:186:6643:0:0:0,-55.9916,-597.947	0/1:86:38,48:38:1360:48:1693:-126.766,0,-96.812	0/1:74:40,34:40:1432:34:1212:-87.1101,0,-106.901	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:4,6:4:140:6:208:-16.0488,0,-9.93428	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:194:194,0:194:6823:0:0:0,-58.3998,-614.146	0/1:42:21,21:21:740:21:756:-55.724,0,-54.2801	0/0:43:43,0:43:1514:0:0:0,-12.9443,-136.552	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/1:141:73,68:73:2590:68:2419:-175.521,0,-190.903	0/1:52:25,27:25:883:27:959:-70.9718,0,-64.1339	0/0:102:102,0:102:3611:0:0:0,-30.7051,-325.196	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:83:83,0:83:2936:0:0:0,-24.9855,-264.471	0/1:55:33,22:33:1168:22:792:-55.049,0,-88.8706	0/1:87:49,38:49:1733:38:1360:-96.511,0,-130.063	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/1:50:32,18:32:1152:18:648:-43.6004,0,-88.9386	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/1:31:21,10:21:743:10:352:-22.6863,0,-57.8614	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:98:97,0:97:3453:0:0:0,-29.1999,-310.623	0/1:25:4,21:4:140:21:752:-60.4805,0,-5.41883	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:74:41,33:41:1476:33:1180:-84.2318,0,-110.86	0/0:80:80,0:80:2838:0:0:0,-24.0824,-255.659	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:152:92,60:92:3288:60:2148:-147.831,0,-250.383	0/1:68:43,25:43:1525:25:888:-59.769,0,-117.071	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.3114	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.391	0/0:99:99,0:99:3535:0:0:0,-29.802,-318.359	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.395	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/1:31:18,13:18:648:13:464:-32.7656,0,-49.32	0/1:105:55,50:55:1976:50:1784:-129.235,0,-146.506	0/0:96:96,0:96:3379:0:0:0,-28.8989,-304.325	0/0:92:92,0:92:3286:0:0:0,-27.6948,-295.959	0/0:189:189,0:189:6719:0:0:0,-56.8947,-604.786	0/1:22:15,7:15:536:7:248:-16.0415,0,-41.9522	0/0:123:122,1:122:4379:1:36:0,-33.4284,-390.683	0/1:17:15,2:15:536:2:72:-1.71921,0,-43.4573	0/1:57:25,32:25:888:32:1148:-86.4711,0,-63.0803	0/1:75:41,33:41:1442:33:1168:-82.7894,0,-107.438	0/0:131:131,0:131:4699:0:0:0,-39.4349,-423.068	0/0:65:65,0:65:2307:0:0:0,-19.5669,-207.891	0/0:103:103,0:103:3650:0:0:0,-31.0061,-328.706	0/1:76:41,35:41:1439:35:1252:-90.1062,0,-106.927	0/1:132:63,69:63:2247:69:2476:-183.357,0,-162.757	0/0:17:17,0:17:586:0:0:0,-5.11751,-53.0628	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/0:81:81,0:81:2860:0:0:0,-24.3834,-257.64	0/0:38:38,0:38:1333:0:0:0,-11.4391,-120.268	0/1:92:48,44:48:1686:44:1558:-112.817,0,-124.33	0/1:67:26,41:26:909:41:1472:-112.607,0,-61.9544	0/0:115:115,0:115:4063:0:0:0,-34.6184,-365.859	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.646
chr04	28214415	.	G	A	99409.4	PASS	AB=0.514832;ABP=24.9107;AC=98;AF=0.521277;AN=188;AO=5925;CIGAR=1X;DP=11487;DPB=11487;DPRA=0;EPP=12851.6;EPPR=12067.7;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9917;MQMR=59.6581;NS=94;NUMALT=1;ODDS=1.59293;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209114;QR=196258;RO=5560;RPL=5923;RPP=12851.6;RPPR=12050.4;RPR=2;RUN=1;SAF=5921;SAP=12834.3;SAR=4;SRF=2;SRP=12059;SRR=5558;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:27,28:27:944:28:995:-73.3074,0,-68.7147	0/1:54:21,33:21:743:33:1144:-87.0058,0,-50.9266	0/1:208:119,89:119:4232:89:3165:-222.46,0,-318.446	0/1:303:118,185:118:4162:185:6533:-496.849,0,-283.505	0/1:18:4,14:4:140:14:504:-40.2796,0,-7.52604	0/1:18:5,13:5:167:13:455:-35.8634,0,-9.93987	0/1:86:28,58:28:993:58:2037:-157.712,0,-63.7825	0/1:114:49,65:49:1686:65:2285:-171.535,0,-117.691	0/1:135:66,69:66:2357:69:2432:-178.496,0,-171.733	0/1:123:39,84:39:1384:84:2968:-230.326,0,-87.827	0/1:93:53,40:53:1856:40:1374:-95.9583,0,-139.321	0/1:209:102,107:102:3583:107:3773:-276.854,0,-259.23	0/1:170:90,80:90:3150:80:2833:-204.033,0,-232.551	0/1:125:75,50:75:2663:50:1742:-119.431,0,-202.266	0/1:177:73,104:73:2565:104:3650:-275.425,0,-177.678	0/1:128:71,57:71:2457:57:2013:-142.91,0,-182.852	0/1:77:42,35:42:1473:35:1240:-88.7251,0,-109.671	0/1:73:45,28:45:1589:28:989:-67.3468,0,-121.301	0/1:39:19,20:19:676:20:688:-50.4974,0,-49.4278	0/1:162:72,90:72:2567:90:3182:-237.839,0,-182.193	0/1:210:96,114:96:3384:114:4018:-298.595,0,-241.524	0/1:91:38,53:38:1323:53:1864:-140.646,0,-91.9358	0/1:134:47,87:47:1624:87:3074:-236.55,0,-105.962	0/1:30:15,15:15:532:15:532:-39.1822,0,-39.1822	0/1:34:19,15:19:680:15:540:-38.7015,0,-51.2941	0/1:299:139,160:139:4920:160:5668:-420.236,0,-352.825	0/1:279:124,153:124:4393:153:5372:-399.875,0,-311.764	0/1:68:23,45:23:816:45:1599:-123.729,0,-53.281	0/1:369:192,177:192:6758:177:6272:-453.5,0,-497.142	0/1:115:37,78:37:1320:78:2721:-210.518,0,-84.4831	0/1:114:46,68:46:1656:68:2416:-183.38,0,-115.011	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:17:7,10:7:252:10:348:-26.5376,0,-17.9114	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:15:1,14:1:36:14:488:-40.6522,-0.917175,0	0/1:389:201,188:201:7082:188:6659:-482.293,0,-520.196	0/1:69:34,35:34:1211:35:1248:-91.8538,0,-88.4807	0/1:100:61,39:61:2107:39:1353:-91.9629,0,-159.764	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:124:65,59:65:2309:59:2062:-148.52,0,-170.722	0/1:45:24,21:24:864:21:747:-54.008,0,-64.5256	0/1:168:50,118:50:1772:118:4132:-321.495,0,-108.848	0/1:107:59,48:59:2086:48:1700:-121.076,0,-155.786	0/1:172:70,102:70:2490:102:3614:-273.691,0,-172.574	0/1:96:40,56:40:1417:56:1968:-148.497,0,-98.9261	0/1:141:60,81:60:2122:81:2869:-216.002,0,-148.783	0/1:132:79,53:79:2794:53:1848:-126.863,0,-211.943	0/1:146:64,82:64:2262:82:2898:-217.105,0,-159.257	0/1:176:94,82:94:3311:82:2890:-207.356,0,-245.199	0/1:71:28,43:28:980:43:1532:-116.8,0,-66.5007	0/1:7:2,5:2:68:5:176:-14.0778,0,-4.3505	0/1:141:68,73:68:2421:73:2604:-192.164,0,-175.695	0/1:81:53,28:53:1887:28:989:-64.9386,0,-145.724	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:196:102,94:102:3621:94:3318:-239.836,0,-267.072	0/1:38:15,23:15:527:23:824:-63.0442,0,-36.321	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:13:4,9:4:144:9:316:-24.8655,0,-9.40023	0/1:98:31,67:31:1116:67:2347:-181.986,0,-71.2508	0/1:171:96,75:96:3368:75:2667:-188.8,0,-251.837	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:299:162,137:162:5778:137:4847:-346.377,0,-429.787	0/1:131:71,60:71:2529:60:2088:-148.754,0,-188.421	0/1:49:32,17:32:1124:17:600:-39.5787,0,-86.5849	0/1:82:62,20:62:2169:20:688:-37.5517,0,-170.778	0/1:177:93,84:93:3324:84:2958:-213.171,0,-246.084	0/1:170:78,92:78:2791:92:3260:-242.446,0,-200.241	0/1:75:41,34:41:1420:34:1188:-84.6273,0,-105.502	0/1:40:16,24:16:561:24:839:-63.7861,0,-38.7759	0/1:91:56,35:56:1973:35:1256:-85.9516,0,-150.449	0/1:38:8,30:8:273:30:1080:-86.0741,0,-13.461	0/1:163:61,102:61:2129:102:3589:-274.154,0,-142.802	0/1:165:75,90:75:2652:90:3183:-237.026,0,-189.169	0/1:138:55,83:55:1950:83:2944:-223.654,0,-134.222	0/1:301:117,184:117:4151:184:6519:-496.189,0,-283.123	0/1:45:27,18:27:972:18:616:-42.2125,0,-74.2516	0/1:233:117,116:117:4187:116:4104:-299.406,0,-306.807	0/1:19:2,17:2:72:17:600:-48.6096,0,-1.10595	0/1:110:56,54:56:1995:54:1919:-139.873,0,-146.689	0/1:141:72,69:72:2570:69:2455:-178.759,0,-189.103	0/1:213:96,117:96:3400:117:4132:-307.951,0,-242.082	0/1:134:71,63:71:2467:63:2194:-157.385,0,-181.877	0/1:192:95,97:95:3333:97:3394:-247.88,0,-242.335	0/1:134:63,71:63:2214:71:2518:-186.534,0,-159.144	0/1:282:155,127:155:5432:127:4489:-319.293,0,-403.123	0/1:33:16,17:16:557:17:590:-43.4902,0,-40.3913	0/1:144:82,62:82:2843:62:2203:-155.187,0,-212.74	0/1:164:86,78:86:3046:78:2751:-198.462,0,-224.983	0/1:84:47,37:47:1638:37:1277:-89.9416,0,-122.294	0/1:188:103,85:103:3589:85:2981:-211.928,0,-266.528	0/1:154:90,64:90:3156:64:2289:-159.913,0,-237.743	0/1:224:120,104:120:4230:104:3697:-265.502,0,-313.415	0/1:229:127,102:127:4477:102:3623:-257.34,0,-334.027
chr04	28214417	.	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chr04	28252006	.	A	G	65913.4	PASS	AB=0.478436;ABP=28.1091;AC=47;AF=0.25;AN=188;AO=2991;CIGAR=1X;DP=13489;DPB=13489;DPRA=0.997941;EPP=6497.88;EPPR=22781.8;GTI=1;LEN=1;MEANALT=1;MQM=59.987;MQMR=59.9964;NS=94;NUMALT=1;ODDS=11.8569;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105433;QR=375277;RO=10498;RPL=1582;RPP=24.7388;RPPR=83.0358;RPR=1409;RUN=1;SAF=1582;SAP=24.7388;SAR=1409;SRF=5560;SRP=83.0358;SRR=4938;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:23,29:23:828:29:1032:-77.5399,0,-59.1906	0/0:230:230,0:230:8227:0:0:0,-69.2369,-740.442	0/0:303:303,0:303:10819:0:0:0,-91.2121,-973.614	0/0:180:180,0:180:6439:0:0:0,-54.1854,-579.594	0/1:128:71,57:71:2544:57:2024:-143.898,0,-190.679	0/1:76:43,33:43:1544:33:1188:-84.3503,0,-116.375	0/1:126:64,62:64:2292:62:2170:-157.634,0,-168.612	0/1:208:107,101:107:3822:101:3565:-258.441,0,-281.562	0/0:170:170,0:170:6078:0:0:0,-51.1751,-547.122	0/0:124:124,0:124:4444:0:0:0,-37.3277,-400.13	0/1:165:82,83:82:2921:83:2883:-210.034,0,-213.454	0/1:160:89,71:89:3174:71:2492:-176.369,0,-237.719	0/0:183:183,0:183:6541:0:0:0,-55.0885,-588.772	0/0:188:188,0:188:6732:0:0:0,-56.5936,-605.954	0/0:152:151,1:151:5384:1:21:0,-43.6566,-482.591	0/1:132:68,64:68:2409:64:2254:-163.386,0,-177.329	0/1:151:77,74:77:2724:74:2584:-187.352,0,-199.947	0/0:181:181,0:181:6491:0:0:0,-54.4864,-584.273	0/1:124:61,63:61:2187:63:2189:-159.945,0,-159.767	0/1:232:114,118:114:4080:118:4206:-308.883,0,-297.547	0/1:228:106,122:106:3751:122:4315:-319.891,0,-269.156	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:95:47,48:47:1688:48:1697:-124.416,0,-123.609	0/1:175:97,78:97:3453:78:2723:-192.632,0,-258.279	0/0:106:106,0:106:3785:0:0:0,-31.9092,-340.848	0/1:331:177,154:177:6305:154:5461:-391.979,0,-467.904	0/1:281:143,138:143:5103:138:4893:-355.936,0,-374.825	0/1:67:33,34:33:1180:34:1207:-88.7659,0,-86.339	0/0:254:253,1:253:9053:1:36:0,-72.8633,-811.147	0/1:120:67,53:67:2391:53:1849:-130.564,0,-179.323	0/1:179:92,87:92:3280:87:3092:-224.622,0,-241.534	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:27:12,15:12:432:15:536:-40.447,0,-31.0934	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:17:11,6:11:388:6:216:-14.673,0,-30.1399	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:355:355,0:355:12693:0:0:0,-106.866,-1142.19	0/1:130:64,66:64:2285:66:2340:-171.724,0,-166.776	0/0:163:163,0:163:5810:0:0:0,-49.0679,-523.013	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:162:160,2:160:5731:2:72:0,-41.9301,-509.069	0/1:95:49,46:49:1749:46:1635:-118.84,0,-129.094	0/1:165:88,77:88:3148:77:2709:-194.378,0,-233.876	0/1:155:89,66:89:3189:66:2289:-159.61,0,-240.572	0/0:108:108,0:108:3871:0:0:0,-32.5112,-348.584	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.203	0/0:159:159,0:159:5700:0:0:0,-47.8638,-513.117	0/1:174:87,87:87:3113:87:3062:-223.43,0,-228.016	0/1:128:70,58:70:2488:58:2080:-148.934,0,-185.639	0/0:171:171,0:171:6104:0:0:0,-51.4761,-549.46	0/1:159:80,79:80:2880:79:2791:-203.566,0,-211.572	0/1:20:7,13:7:252:13:464:-36.0769,0,-17.0084	0/0:220:219,1:219:7800:1:36:0,-62.6283,-698.431	0/1:58:28,30:28:1000:30:1063:-78.5211,0,-72.8556	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:133:133,0:133:4730:0:0:0,-40.037,-425.859	0/1:36:19,17:19:676:17:612:-44.5764,0,-50.3309	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:29:19,10:19:684:10:352:-23.2883,0,-53.1605	0/1:155:82,73:82:2944:73:2577:-185.518,0,-218.534	0/0:211:209,2:209:7482:2:72:0,-56.6806,-666.585	0/1:18:16,2:16:576:2:68:-1.03917,0,-46.7564	0/1:116:66,50:66:2360:50:1770:-124.662,0,-177.739	0/1:249:118,131:118:4221:131:4655:-344.156,0,-305.112	0/0:130:130,0:130:4643:0:0:0,-39.1339,-418.033	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.116	0/0:151:148,3:148:5311:3:108:0,-35.3804,-468.047	0/0:161:158,3:158:5672:3:108:0,-38.3907,-500.522	0/0:101:101,0:101:3607:0:0:0,-30.404,-324.836	0/0:116:116,0:116:4148:0:0:0,-34.9195,-373.501	0/0:223:223,0:223:7974:0:0:0,-67.1297,-717.682	0/1:43:24,19:24:860:19:667:-47.4103,0,-64.7775	0/1:93:49,44:49:1752:44:1559:-112.605,0,-129.968	0/0:107:106,1:106:3779:1:36:0,-28.6119,-336.711	0/0:220:219,1:219:7855:1:36:0,-62.6283,-703.376	0/0:179:178,1:178:6372:1:36:0,-50.2861,-569.969	0/1:160:82,78:82:2948:78:2741:-198.766,0,-217.388	0/0:187:186,1:186:6683:1:36:0,-52.6943,-597.944	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:177:105,72:105:3764:72:2544:-175.925,0,-285.677	0/1:170:96,74:96:3409:74:2588:-181.993,0,-255.85	0/0:242:241,1:241:8621:1:36:0,-69.251,-772.286	0/0:220:220,0:220:7856:0:0:0,-66.2266,-707.065	0/0:174:174,0:174:6227:0:0:0,-52.3792,-560.525	0/1:174:100,74:100:3584:74:2586:-180.607,0,-270.387	0/1:269:147,122:147:5242:122:4260:-302.607,0,-390.941	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/0:140:140,0:140:4954:0:0:0,-42.1442,-446.009	0/0:157:157,0:157:5609:0:0:0,-47.2617,-504.931	0/0:218:218,0:218:7812:0:0:0,-65.6245,-703.108	0/1:208:107,101:107:3831:101:3521:-254.486,0,-282.302	0/1:136:54,82:54:1927:82:2859:-216.609,0,-132.766	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.029	0/0:285:285,0:285:10176:0:0:0,-85.7935,-915.771
chr04	28418420	.	C	T	53349.9	PASS	AB=0.469694;ABP=43.9433;AC=46;AF=0.244681;AN=188;AO=2445;CIGAR=1X;DP=10994;DPB=10994;DPRA=1.26635;EPP=5303.58;EPPR=18534.4;GTI=0;LEN=1;MEANALT=1.1194;MQM=59.8822;MQMR=59.9555;NS=94;NUMALT=1;ODDS=15.2646;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86552;QR=300036;RO=8538;RPL=1127;RPP=35.4101;RPPR=51.802;RPR=1318;RUN=1;SAF=1126;SAP=36.0922;SAR=1319;SRF=4049;SRP=52.2487;SRR=4489;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:26,29:26:911:29:1021:-75.6329,0,-65.7483	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.315	0/0:182:180,2:180:6390:2:72:0,-47.9507,-568.345	0/0:234:233,1:233:8256:1:36:0,-66.8427,-739.459	0/1:59:38,21:38:1297:21:756:-50.6049,0,-99.263	0/1:50:30,20:30:1040:20:693:-47.6381,0,-78.855	0/1:127:68,59:68:2376:59:2043:-145.903,0,-175.863	0/1:203:95,108:95:3356:108:3834:-284.147,0,-241.146	0/0:152:152,0:152:5352:0:0:0,-45.7566,-480.878	0/0:106:106,0:106:3734:0:0:0,-31.9092,-336.262	0/1:123:53,70:53:1851:70:2474:-185.885,0,-129.84	0/1:211:118,93:118:4043:93:3268:-230.822,0,-300.548	0/0:144:143,1:143:4962:1:36:0,-39.75,-443.14	0/0:152:151,0:151:5268:0:0:0,-45.4555,-473.867	0/0:151:151,0:151:5293:0:0:0,-45.4555,-476.511	0/1:158:82,76:82:2880:76:2686:-194.423,0,-211.872	0/1:100:44,56:44:1554:56:1979:-148.281,0,-110.047	0/0:79:78,1:78:2679:1:36:0,-20.1831,-237.758	0/1:75:26,49:26:872:49:1736:-133.944,0,-56.2096	0/1:170:90,80:90:3204:80:2840:-204.658,0,-237.407	0/1:163:96,66:96:3350:66:2353:-162.758,0,-252.57	0/0:82:81,1:81:2880:1:36:0,-21.0862,-255.837	0/1:111:65,46:65:2303:46:1644:-114.83,0,-174.117	0/1:85:72,13:72:2463:13:464:-16.51,0,-196.334	0/0:104:104,0:104:3670:0:0:0,-31.3071,-330.432	0/1:256:138,118:138:4914:118:4184:-299.679,0,-365.349	0/1:229:121,108:121:4247:108:3832:-276.143,0,-313.476	0/1:62:29,32:29:1021:32:1120:-82.3819,0,-73.4779	0/0:262:261,1:261:9259:1:32:0,-75.6705,-830.077	0/1:108:60,48:60:2124:48:1716:-122.214,0,-158.915	0/1:117:71,46:71:2530:46:1639:-112.571,0,-192.73	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/1:27:8,19:8:288:19:684:-53.7625,0,-18.1396	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/1:17:9,8:9:294:8:277:-20.1476,0,-21.6581	0/0:16:16,0:16:544:0:0:0,-4.81648,-49.2797	0/0:321:320,0:320:11209:0:0:0,-96.3296,-1008.28	0/1:61:31,30:31:1107:30:1045:-75.9948,0,-81.5773	0/0:80:79,1:79:2734:1:36:0,-20.4851,-242.704	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:139:136,3:136:4843:3:108:0,-31.768,-425.865	0/1:70:36,34:36:1275:34:1199:-87.1412,0,-93.9802	0/1:185:112,73:112:3994:73:2604:-178.915,0,-303.959	0/1:122:70,52:70:2439:52:1837:-128.878,0,-183.034	0/0:71:71,0:71:2454:0:0:0,-21.3731,-221.111	0/0:99:99,0:99:3475:0:0:0,-29.802,-312.932	0/0:114:114,0:114:4036:0:0:0,-34.3174,-363.427	0/1:179:104,74:104:3678:74:2613:-181.609,0,-277.419	0/1:86:51,35:51:1813:35:1256:-87.4567,0,-137.561	0/0:163:159,4:159:5592:4:144:0,-35.7543,-490.087	0/1:144:74,70:74:2627:70:2479:-179.959,0,-193.33	0/1:18:8,9:8:284:9:324:-24.0285,0,-20.4262	0/0:83:83,0:83:2910:0:0:0,-24.9855,-262.136	0/1:79:36,43:36:1264:43:1528:-114.032,0,-90.2784	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9231	0/0:182:182,0:182:6468:0:0:0,-54.7875,-582.205	0/1:52:28,24:28:986:24:848:-60.9861,0,-73.3986	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:12:5,7:5:176:7:252:-19.4157,0,-12.5727	0/1:99:51,48:51:1797:48:1692:-122.764,0,-132.208	0/0:145:143,1:143:5006:1:36:0,-40.04,-447.164	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:132:76,56:76:2683:56:1978:-138.556,0,-201.978	0/1:177:95,82:95:3364:82:2889:-206.959,0,-249.694	0/0:99:99,0:99:3510:0:0:0,-29.802,-316.112	0/0:78:78,0:78:2763:0:0:0,-23.4803,-248.908	0/0:158:156,1:156:5525:1:32:0,-44.4023,-494.159	0/0:134:131,3:131:4625:3:108:0,-30.2628,-406.338	0/0:92:92,0:92:3241:0:0:0,-27.6948,-291.914	0/0:76:76,0:76:2714:0:0:0,-22.8783,-244.503	0/0:96:96,0:96:3382:0:0:0,-28.8989,-304.596	0/1:20:8,12:8:279:12:428:-32.8382,0,-19.4269	0/1:100:60,40:60:2117:40:1436:-98.9421,0,-160.65	0/0:158:156,2:156:5493:2:72:0,-40.726,-487.664	0/0:199:199,0:199:7020:0:0:0,-59.905,-630.85	0/0:155:154,1:154:5482:1:36:0,-43.0614,-489.909	0/1:114:61,53:61:2120:53:1877:-134.882,0,-156.745	0/0:148:146,2:146:5202:2:68:0,-38.0951,-461.863	0/1:19:9,10:9:305:10:360:-27.0247,0,-22.0576	0/1:119:67,52:67:2370:52:1832:-129.338,0,-177.725	0/1:160:72,88:72:2530:88:3104:-231.419,0,-179.782	0/0:243:239,2:239:8379:2:72:0,-66.0713,-747.291	0/0:79:78,1:78:2730:1:36:0,-20.1831,-242.344	0/0:171:170,1:170:5906:1:36:0,-47.8779,-528.059	0/1:106:57,49:57:1952:49:1751:-125.962,0,-144.042	0/1:237:132,105:132:4628:105:3736:-265.086,0,-345.342	0/0:28:28,0:28:976:0:0:0,-8.42884,-88.1488	0/0:136:135,0:135:4628:0:0:0,-40.639,-416.334	0/0:134:134,0:134:4623:0:0:0,-40.338,-416.003	0/0:134:133,1:133:4603:1:36:0,-36.7397,-410.836	0/1:197:87,110:87:3030:110:3887:-290.72,0,-213.627	0/1:124:41,83:41:1424:83:2894:-223.358,0,-91.125	0/0:100:96,4:96:3384:4:144:0,-16.7894,-291.461	0/0:219:218,1:218:7556:1:36:0,-62.3273,-676.498
chr04	28418453	.	G	A	96888.8	PASS	AB=0.507861;ABP=4.47833;AC=142;AF=0.755319;AN=188;AO=4561;CIGAR=1X;DP=5916;DPB=5916;DPRA=0;EPP=9907.1;EPPR=2941.01;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9351;MQMR=59.9741;NS=94;NUMALT=1;ODDS=3.94957;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163345;QR=48168;RO=1353;RPL=4561;RPP=9907.1;RPPR=2941.01;RPR=0;RUN=1;SAF=0;SAP=9907.1;SAR=4561;SRF=0;SRP=2941.01;SRR=1353;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:14,7:14:492:7:252:-16.7073,0,-38.2907	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:112:1,111:1:36:111:3976:-354.421,-30.1171,0	1/1:118:0,118:0:0:118:4228:-380.7,-35.5215,0	0/1:26:7,19:7:252:19:680:-53.7024,0,-15.2022	0/1:6:4,2:4:136:2:72:-5.03054,0,-10.7694	0/1:67:37,30:37:1305:30:1072:-76.6119,0,-97.5804	0/1:122:62,58:62:2212:58:2068:-149.908,0,-162.862	1/1:72:0,72:0:0:72:2576:-230.803,-21.6742,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:81:43,38:43:1518:38:1342:-96.6952,0,-112.528	0/1:101:37,64:37:1306:64:2286:-175.596,0,-87.4359	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:96:0,96:0:0:96:3443:-310.082,-28.8989,0	1/1:72:0,72:0:0:72:2571:-231.639,-21.6742,0	0/1:81:44,37:44:1567:37:1332:-95.799,0,-116.937	0/1:58:30,28:30:1059:28:1008:-73.5766,0,-78.1607	1/1:44:0,44:0:0:44:1571:-141.681,-13.2453,0	0/1:42:29,13:29:1032:13:464:-29.4542,0,-80.5502	0/1:90:46,44:46:1640:44:1580:-115.398,0,-120.796	0/1:107:49,58:49:1744:58:2061:-153.548,0,-125.033	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:47:21,26:21:752:26:932:-70.0505,0,-53.8578	0/1:16:2,14:2:72:14:504:-40.8816,0,-2.02024	1/1:70:1,69:1:36:69:2472:-219.135,-17.4738,0	0/1:150:71,79:71:2540:79:2840:-210.683,0,-183.697	0/1:126:60,66:60:2148:66:2368:-175.448,0,-155.658	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	1/1:155:0,155:0:0:155:5552:-499.8,-46.6597,0	0/1:73:35,38:35:1252:38:1364:-101.086,0,-91.0099	0/1:45:19,26:19:680:26:932:-70.6525,0,-47.9828	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/1:23:16,7:16:572:7:252:-16.1053,0,-44.8897	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:146:0,146:0:0:146:5230:-470.837,-43.9504,0	0/1:22:8,14:8:288:14:500:-38.7135,0,-19.6447	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:68:2,66:2:72:66:2364:-206.095,-13.6333,0	0/1:42:20,22:20:708:22:787:-58.5112,0,-51.4023	0/1:111:48,63:48:1720:63:2253:-169.619,0,-121.671	0/1:59:23,36:23:807:36:1296:-99.1832,0,-55.1884	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	1/1:78:0,78:0:0:78:2791:-251.43,-23.4803,0	0/1:77:35,42:35:1228:42:1508:-112.835,0,-87.6445	0/1:36:13,23:13:464:23:824:-63.6462,0,-31.2604	1/1:102:1,101:1:36:101:3628:-323.126,-27.1068,0	0/1:67:39,28:39:1396:28:1004:-70.5069,0,-105.77	0/1:12:5,7:5:180:7:248:-19.0514,0,-12.9397	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:47:29,18:29:1044:18:640:-43.409,0,-80.1264	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:108:0,108:0:0:108:3870:-348.445,-32.5112,0	0/1:23:14,9:14:500:9:320:-22.2187,0,-38.4109	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:58:25,33:25:884:33:1172:-88.3278,0,-62.4186	1/1:76:1,75:1:36:75:2683:-238.116,-19.28,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:62:27,35:27:956:35:1256:-94.6814,0,-67.6919	0/1:129:57,72:57:2020:72:2584:-193.976,0,-143.24	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	1/1:99:0,99:0:0:99:3556:-320.247,-29.802,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.0188	0/1:46:24,22:24:840:22:792:-57.7133,0,-62.0708	1/1:87:0,87:0:0:87:3100:-279.228,-26.1896,0	1/1:98:0,98:0:0:98:3484:-312.409,-29.5009,0	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	0/1:62:30,32:30:1064:32:1144:-84.6057,0,-77.4078	1/1:67:0,67:0:0:67:2400:-216.246,-20.169,0	0/1:14:9,5:9:312:5:180:-12.3376,0,-24.2009	0/1:72:37,35:37:1324:35:1252:-91.3066,0,-97.7879	0/1:105:64,41:64:2292:41:1457:-99.8158,0,-174.932	1/1:102:2,100:2:72:100:3566:-314.311,-23.8683,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:87:0,87:0:0:87:3115:-280.574,-26.1896,0	0/1:49:21,28:21:739:28:1004:-75.9254,0,-52.0819	0/1:116:50,66:50:1783:66:2376:-179.178,0,-125.833	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:76:1,75:1:36:75:2679:-237.755,-19.28,0	1/1:64:0,64:0:0:64:2291:-206.215,-19.2659,0	1/1:96:0,96:0:0:96:3448:-310.526,-28.8989,0	0/1:128:66,62:66:2368:62:2228:-162.252,0,-174.846	0/1:60:44,16:44:1576:16:576:-34.1132,0,-124.07	1/1:47:0,47:0:0:47:1688:-152.162,-14.1484,0	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0
chr04	28455426	.	A	G	25253.6	PASS	AB=0.542815;ABP=46.3352;AC=50;AF=0.268817;AN=186;AO=1514;CIGAR=1X;DP=5304;DPB=5304;DPRA=1.09412;EPP=3290.62;EPPR=8228.55;GTI=2;LEN=1;MEANALT=1.03704;MQM=52.5443;MQMR=59.9512;NS=93;NUMALT=1;ODDS=2.59181;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53850;QR=135440;RO=3788;RPL=1514;RPP=3290.62;RPPR=8228.55;RPR=0;RUN=1;SAF=0;SAP=3290.62;SAR=1514;SRF=0;SRP=8228.55;SRR=3788;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:22,11:22:788:11:396:-26.0488,0,-61.3108	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:113:113,0:113:4012:0:0:0,-34.0164,-361.273	0/1:28:18,10:18:644:10:360:-24.3155,0,-49.8618	0/1:23:13,10:13:464:10:356:-25.4576,0,-35.1738	0/1:79:34,45:34:1224:45:1595:-117.794,0,-86.6775	0/1:76:41,35:41:1463:35:1229:-88.0336,0,-109.087	0/0:68:68,0:68:2420:0:0:0,-20.47,-218.057	0/0:40:39,1:39:1396:1:36:0,-8.50508,-122.403	0/1:68:30,38:30:1068:38:1356:-99.9491,0,-75.962	0/1:100:60,40:60:2135:40:1428:-98.6875,0,-162.3	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/1:66:32,34:32:1148:34:1207:-89.0669,0,-83.7619	0/1:35:13,22:13:468:22:777:-59.7143,0,-31.9236	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:40:16,24:16:576:24:845:-64.3192,0,-40.0887	0/1:57:24,32:24:856:32:1140:-83.4462,0,-60.1497	0/1:72:38,34:38:1360:34:1220:-88.4322,0,-101.026	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.985	0/1:52:18,34:18:644:34:1207:-91.6,0,-42.6347	0/1:35:31,4:31:1108:4:144:-2.77757,0,-89.4949	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:125:61,64:61:2184:64:2272:-164.847,0,-159.197	0/1:138:70,68:70:2508:68:2415:-175.951,0,-184.43	0/1:41:17,23:17:604:23:824:-62.083,0,-42.2905	0/0:134:134,0:134:4764:0:0:0,-40.338,-428.921	0/1:65:21,44:21:752:44:1572:-122.205,0,-48.4393	0/1:45:23,22:23:816:22:779:-55.899,0,-60.2154	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:151:150,1:150:5367:1:36:0,-41.8887,-479.595	0/1:85:24,61:24:864:61:2184:-171.238,0,-52.495	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	.:.:.:.:.:.:.:.	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.153	0/1:31:15,16:15:540:16:572:-42.4815,0,-39.6046	0/1:106:43,63:43:1544:63:2252:-171.007,0,-107.338	0/1:59:33,26:33:1171:26:902:-62.4356,0,-87.9359	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/1:96:33,63:33:1176:63:2227:-168.823,0,-77.2489	0/1:67:24,43:24:856:43:1540:-115.13,0,-56.6338	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:79:14,65:14:496:65:2315:-179.97,0,-21.1929	1/1:3:0,3:0:0:3:108:-9.90114,-0.90309,0	0/0:56:52,4:52:1868:4:140:0,-3.9131,-155.455	0/1:47:23,24:23:828:24:856:-61.3795,0,-60.6957	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.369	0/1:24:9,15:9:320:15:540:-40.1976,0,-21.9176	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:13:1,12:1:36:12:419:-33.804,-0.315115,0	0/1:35:13,22:13:468:22:784:-60.3445,0,-31.9236	0/0:56:55,1:55:1976:1:36:0,-13.3216,-174.579	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:139:64,75:64:2288:75:2684:-197.793,0,-164.322	0/1:77:34,43:34:1212:43:1540:-113.447,0,-86.207	0/0:18:17,1:17:608:1:36:0,-1.82026,-51.4537	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:51:50,1:50:1788:1:36:0,-11.8164,-157.666	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:45:28,17:28:1000:17:608:-41.0102,0,-76.769	0/1:19:9,10:9:320:10:351:-25.8036,0,-23.4228	0/1:79:30,49:30:1072:49:1708:-130.207,0,-73.0111	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.614	0/0:73:72,1:72:2552:1:36:0,-18.3769,-226.289	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.655	0/1:120:82,38:82:2936:38:1352:-85.852,0,-228.351	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:56:19,37:19:676:37:1319:-102.153,0,-44.2917	0/1:26:17,9:17:604:9:316:-20.9521,0,-46.8638	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:49:21,28:21:752:28:1000:-73.4476,0,-53.2558	0/1:122:62,60:62:2220:60:2115:-150.994,0,-163.339	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:53:53,0:53:1886:0:0:0,-15.9546,-170.017	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.654	0/1:89:39,50:39:1392:50:1773:-133.059,0,-98.7873	0/1:64:17,47:17:612:47:1683:-129.732,0,-36.1475	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767
chr04	28468097	.	C	G	177571	PASS	AB=0.522526;ABP=25.4132;AC=144;AF=0.765957;AN=188;AO=8403;CIGAR=1X;DP=10846;DPB=10846;DPRA=0;EPP=18241.2;EPPR=5288.38;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.972;MQMR=59.9438;NS=94;NUMALT=1;ODDS=5.01873;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=299411;QR=87218;RO=2438;RPL=1;RPP=18241.2;RPPR=5288.38;RPR=8402;RUN=1;SAF=0;SAP=18249.9;SAR=8403;SRF=0;SRP=5297.06;SRR=2438;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:47,39:47:1684:39:1357:-96.5346,0,-125.958	1/1:82:0,82:0:0:82:2933:-264.186,-24.6845,0	1/1:126:0,126:0:0:126:4483:-403.64,-37.9298,0	1/1:275:1,274:1:32:274:9803:-879.014,-79.5839,0	0/1:60:20,40:20:702:40:1412:-109.313,0,-45.4407	0/1:56:21,35:21:756:35:1208:-92.1605,0,-51.5095	0/1:72:40,32:40:1436:32:1144:-81.5595,0,-107.864	0/1:127:53,74:53:1899:74:2639:-199.523,0,-132.956	1/1:153:0,153:0:0:153:5483:-493.595,-46.0576,0	1/1:72:0,72:0:0:72:2565:-230.728,-21.6742,0	0/1:50:19,31:19:669:31:1103:-84.5283,0,-45.4824	0/1:100:45,55:45:1590:55:1942:-144.95,0,-113.282	1/1:75:0,75:0:0:75:2676:-241.083,-22.5773,0	1/1:70:0,70:0:0:70:2482:-223.632,-21.0721,0	1/1:76:0,76:0:0:76:2696:-242.882,-22.8783,0	0/1:69:28,41:28:989:41:1457:-110.654,0,-68.5509	0/1:44:25,19:25:900:19:684:-48.645,0,-68.0757	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:17:7,10:7:248:10:347:-26.4453,0,-17.5467	0/1:455:236,219:236:8456:219:7789:-564.072,0,-624.066	0/1:188:73,115:73:2608:115:4092:-311.871,0,-178.36	1/1:188:0,188:0:0:188:6712:-604.148,-56.5936,0	1/1:179:0,179:0:0:179:6361:-572.581,-53.8844,0	1/1:82:0,82:0:0:82:2894:-260.693,-24.6845,0	1/1:115:0,115:0:0:115:4115:-370.534,-34.6185,0	0/1:387:178,209:178:6384:209:7411:-550.539,0,-457.779	0/1:309:134,175:134:4790:175:6253:-469.846,0,-338.237	0/1:27:15,12:15:540:12:428:-30.731,0,-40.8087	1/1:359:1,357:1:36:357:12789:-1147.23,-104.53,0	0/1:192:98,94:98:3524:94:3331:-242.209,0,-259.57	0/1:125:65,60:65:2298:60:2122:-153.619,0,-169.441	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:198:0,198:0:0:198:7046:-634.2,-59.6039,0	0/1:205:86,119:86:3092:119:4202:-316.652,0,-216.796	1/1:52:0,52:0:0:52:1816:-163.716,-15.6536,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:113:0,113:0:0:113:4032:-363.067,-34.0164,0	0/1:25:18,7:18:648:7:252:-15.5032,0,-51.1261	0/1:158:77,81:77:2753:81:2899:-213.582,0,-200.448	0/1:55:25,30:25:900:30:1076:-80.5962,0,-64.7644	1/1:54:0,54:0:0:54:1929:-173.886,-16.2556,0	1/1:94:0,94:0:0:94:3344:-301.178,-28.2968,0	1/1:200:0,200:0:0:200:7095:-638.613,-60.206,0	0/1:200:111,88:111:3980:88:3160:-224.359,0,-298.114	0/1:139:57,82:57:2048:82:2921:-221.281,0,-142.748	1/1:140:0,140:0:0:140:5010:-451.046,-42.1442,0	0/1:106:53,53:53:1900:53:1871:-136.757,0,-139.369	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	1/1:165:1,164:1:32:164:5870:-525.209,-46.4706,0	0/1:128:73,55:73:2620:55:1972:-139.223,0,-197.515	1/1:16:0,16:0:0:16:569:-51.5419,-4.81648,0	1/1:167:0,167:0:0:167:5944:-535.023,-50.272,0	0/1:102:47,55:47:1688:55:1963:-146.24,0,-121.502	1/1:29:0,29:0:0:29:1029:-92.922,-8.72987,0	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:130:68,62:68:2415:62:2202:-159.31,0,-178.472	1/1:102:0,102:0:0:102:3634:-327.262,-30.7051,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:187:86,101:86:3092:101:3594:-267.374,0,-222.186	0/1:220:97,123:97:3470:123:4396:-329.587,0,-246.284	1/1:94:4,90:4:144:90:3211:-275.869,-14.9832,0	1/1:124:0,124:0:0:124:4418:-397.79,-37.3277,0	1/1:250:3,247:3:108:247:8829:-784.522,-65.1823,0	1/1:202:0,201:0:0:201:7194:-647.109,-60.507,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:85:0,85:0:0:85:3009:-271.041,-25.5876,0	0/1:51:24,27:24:864:27:972:-72.4454,0,-62.7016	0/1:36:17,19:17:608:19:680:-50.6921,0,-44.2149	0/1:142:62,80:62:2228:80:2841:-213.153,0,-158.038	1/1:175:0,175:0:0:175:6228:-560.617,-52.6803,0	1/1:226:0,226:0:0:226:8045:-724.072,-68.0328,0	1/1:189:0,188:0:0:188:6732:-605.595,-56.5936,0	0/1:98:49,48:49:1728:48:1707:-124.355,0,-126.238	1/1:133:0,133:0:0:133:4708:-423.831,-40.037,0	0/1:21:7,14:7:252:14:500:-39.0145,0,-16.6991	0/1:154:77,77:77:2732:77:2738:-200.304,0,-199.74	0/1:107:66,41:66:2357:41:1472:-100.566,0,-180.177	1/1:373:3,370:3:108:370:13217:-1179.25,-102.209,0	1/1:53:0,53:0:0:53:1888:-170.188,-15.9546,0	1/1:84:0,84:0:0:84:3004:-270.59,-25.2865,0	0/1:47:23,24:23:813:24:860:-63.5734,0,-59.3407	0/1:121:53,68:53:1885:68:2430:-182.53,0,-133.502	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:75:0,75:0:0:75:2659:-239.554,-22.5773,0	1/1:90:0,90:0:0:90:3199:-288.133,-27.0927,0	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	0/1:136:56,80:56:2016:80:2801:-211.388,0,-140.773	0/1:94:61,33:61:2192:33:1188:-78.9318,0,-169.249	1/1:152:0,152:0:0:152:5436:-489.368,-45.7566,0	1/1:104:0,104:0:0:104:3730:-335.899,-31.3071,0
chr04	28468114	.	A	G	40311.7	PASS	AB=0.478159;ABP=24.1631;AC=44;AF=0.234043;AN=188;AO=2453;CIGAR=1X;DP=10824;DPB=10824;DPRA=1.25298;EPP=5329.63;EPPR=18069.8;GTI=1;LEN=1;MEANALT=1.04082;MQM=59.9283;MQMR=59.976;NS=94;NUMALT=1;ODDS=5.11098;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87395;QR=299213;RO=8368;RPL=2453;RPP=5329.63;RPPR=18069.8;RPR=0;RUN=1;SAF=0;SAP=5329.63;SAR=2453;SRF=0;SRP=18173.9;SRR=8368;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:39,47:39:1387:47:1688:-126.318,0,-99.2289	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.366	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.607	0/0:272:271,1:271:9670:1:36:0,-78.2819,-866.656	0/1:58:38,20:38:1355:20:696:-45.4999,0,-104.79	0/1:56:35,21:35:1248:21:756:-51.5095,0,-95.7672	0/1:74:32,42:32:1120:42:1485:-111.658,0,-78.7956	0/1:129:74,55:74:2614:55:1967:-138.443,0,-196.673	0/0:151:151,0:151:5384:0:0:0,-45.4555,-484.691	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.239	0/1:47:28,19:28:1004:19:680:-47.3808,0,-76.5275	0/1:96:52,44:52:1868:44:1568:-112.513,0,-139.5	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.121	0/1:68:40,28:40:1436:28:1008:-70.5663,0,-109.068	0/1:47:21,26:21:752:26:927:-69.599,0,-53.8578	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/1:456:221,235:221:7920:235:8320:-611.545,0,-575.551	0/1:192:116,76:116:4141:76:2709:-186.254,0,-315.075	0/0:186:186,0:186:6663:0:0:0,-55.9916,-599.746	0/0:177:177,0:177:6332:0:0:0,-53.2823,-569.969	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:117:117,0:117:4187:0:0:0,-35.2205,-377.011	0/1:386:208,178:208:7434:178:6312:-451.788,0,-552.9	0/1:307:172,134:172:6168:134:4812:-340.907,0,-462.891	0/1:28:12,16:12:428:16:576:-43.7461,0,-30.43	0/0:360:360,0:360:12900:0:0:0,-108.371,-1160.81	0/1:188:90,98:90:3217:98:3492:-257.898,0,-233.157	0/1:130:64,66:64:2287:66:2302:-168.305,0,-166.957	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:197:197,0:197:7048:0:0:0,-59.3029,-634.382	0/1:210:120,90:120:4283:90:3205:-225.456,0,-322.432	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:111:111,0:111:3964:0:0:0,-33.4143,-356.949	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.5032	0/1:160:82,78:82:2940:78:2783:-202.546,0,-216.669	0/1:58:31,27:31:1108:27:972:-70.3382,0,-82.5713	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:94:94,0:94:3355:0:0:0,-28.2968,-302.167	0/0:200:200,0:200:7165:0:0:0,-60.206,-644.904	0/1:206:92,114:92:3291:114:4039:-301.678,0,-234.397	0/1:141:83,58:83:2976:58:2046:-141.959,0,-225.627	0/0:144:144,0:144:5143:0:0:0,-43.3483,-463.012	0/1:105:53,52:53:1900:52:1856:-135.712,0,-139.67	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	0/0:163:162,1:162:5754:1:36:0,-45.4696,-514.379	0/1:131:56,75:56:2008:75:2678:-201.83,0,-141.558	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:162:162,0:162:5775:0:0:0,-48.7669,-519.858	0/1:101:54,47:54:1944:47:1676:-120.723,0,-144.832	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/1:130:61,69:61:2175:69:2468:-183.24,0,-156.882	0/0:100:99,0:99:3539:0:0:0,-29.802,-318.517	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:184:101,83:101:3593:83:2963:-211.485,0,-268.187	0/1:221:124,97:124:4434:97:3459:-244.995,0,-332.703	0/0:95:90,5:90:3223:5:180:0,-12.0458,-273.422	0/0:123:123,0:123:4396:0:0:0,-37.0267,-395.814	0/0:243:240,3:240:8592:3:108:0,-63.0751,-763.201	0/0:201:201,0:201:7156:0:0:0,-60.507,-644.055	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:82:82,0:82:2903:0:0:0,-24.6845,-261.507	0/1:52:28,24:28:1004:24:862:-62.2203,0,-75.0223	0/1:37:21,16:21:734:16:567:-40.2226,0,-55.2423	0/1:143:82,61:82:2936:61:2175:-152.969,0,-221.415	0/0:178:178,0:178:6343:0:0:0,-53.5833,-570.961	0/0:220:220,0:220:7863:0:0:0,-66.2266,-707.698	0/0:188:188,0:188:6740:0:0:0,-56.5936,-606.673	0/1:98:49,49:49:1760:49:1747:-128.008,0,-129.183	0/0:132:132,0:132:4693:0:0:0,-39.736,-422.5	0/1:21:14,7:14:504:7:248:-16.3392,0,-39.3765	0/1:156:79,77:79:2821:77:2768:-202.369,0,-207.167	0/1:106:39,67:39:1396:67:2396:-183.988,0,-94.0299	0/0:368:366,2:366:13105:2:72:0,-103.942,-1172.39	0/0:53:53,0:53:1899:0:0:0,-15.9546,-171.181	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/1:48:24,23:24:855:23:811:-58.9456,0,-62.9059	0/1:122:68,54:68:2440:54:1936:-137.791,0,-183.129	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.217	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:133:79,54:79:2832:54:1936:-134.479,0,-215.081	0/1:95:34,61:34:1215:61:2166:-166.608,0,-81.0579	0/0:152:152,0:152:5455:0:0:0,-45.7566,-491.076	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439
chr04	28468123	.	T	C	40079	PASS	AB=0.479754;ABP=20.9476;AC=44;AF=0.234043;AN=188;AO=2431;CIGAR=1X;DP=10702;DPB=10702;DPRA=1.25481;EPP=5281.86;EPPR=17958.9;GTI=1;LEN=1;MEANALT=1.03922;MQM=59.9206;MQMR=59.982;NS=94;NUMALT=1;ODDS=4.28602;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86748;QR=293813;RO=8269;RPL=2431;RPP=5281.86;RPPR=17958.9;RPR=0;RUN=1;SAF=0;SAP=5281.86;SAR=2431;SRF=0;SRP=17958.9;SRR=8269;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:37,44:37:1316:44:1560:-116.308,0,-94.3584	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.508	0/0:123:123,0:123:4339:0:0:0,-37.0267,-390.686	0/0:273:272,1:272:9674:1:36:0,-78.5829,-867.018	0/1:59:39,20:39:1404:20:720:-47.368,0,-108.899	0/1:55:34,21:34:1208:21:748:-51.0886,0,-92.4694	0/1:71:30,41:30:1072:41:1464:-110.683,0,-75.4193	0/1:128:69,58:69:2460:58:2084:-149.211,0,-183.047	0/0:146:146,0:146:5177:0:0:0,-43.9504,-466.067	0/0:71:71,0:71:2512:0:0:0,-21.3731,-226.334	0/1:48:29,19:29:1040:19:676:-46.7186,0,-79.4649	0/1:95:51,44:51:1820:44:1560:-112.091,0,-135.483	0/0:72:72,0:72:2556:0:0:0,-21.6742,-230.291	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.576	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.878	0/1:69:42,27:42:1496:27:972:-67.0268,0,-114.163	0/1:48:21,27:21:744:27:933:-69.8217,0,-52.8349	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:454:218,236:218:7709:236:8425:-621.579,0,-557.18	0/1:187:112,75:112:3973:75:2688:-185.836,0,-301.47	0/0:187:187,0:187:6626:0:0:0,-56.2926,-596.369	0/0:174:174,0:174:6127:0:0:0,-52.3792,-551.53	0/0:77:77,0:77:2733:0:0:0,-23.1793,-246.212	0/0:114:114,0:114:3985:0:0:0,-34.3174,-358.84	0/1:382:207,175:207:7373:175:6227:-445.511,0,-548.628	0/1:307:173,134:173:6165:134:4807:-340.368,0,-462.534	0/1:28:12,16:12:428:16:557:-42.0267,0,-30.43	0/0:357:357,0:357:12688:0:0:0,-107.468,-1141.75	0/1:187:91,96:91:3237:96:3429:-252.53,0,-235.259	0/1:128:63,65:63:2199:65:2275:-166.47,0,-159.639	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:15:6,9:6:212:9:320:-24.6269,0,-14.9093	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:198:198,0:198:7076:0:0:0,-59.6039,-636.902	0/1:208:118,90:118:4189:90:3228:-228.118,0,-314.579	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.776	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:110:110,0:110:3909:0:0:0,-33.1133,-352.004	0/1:25:7,18:7:252:18:644:-50.7648,0,-15.5032	0/1:159:81,78:81:2900:78:2796:-204.016,0,-213.372	0/1:57:30,27:30:1072:27:964:-69.9181,0,-79.6337	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:91:91,0:91:3217:0:0:0,-27.3937,-289.754	0/0:198:198,0:198:7056:0:0:0,-59.6039,-635.106	0/1:204:93,111:93:3276:111:3950:-294.281,0,-233.646	0/1:140:83,57:83:2980:57:2029:-140.736,0,-226.288	0/0:142:142,0:142:5061:0:0:0,-42.7463,-455.636	0/1:105:52,53:52:1825:53:1885:-138.318,0,-132.921	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	0/0:161:159,2:159:5619:2:72:0,-41.6291,-498.998	0/1:126:54,72:54:1925:72:2584:-194.879,0,-135.595	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:161:161,0:161:5727:0:0:0,-48.4658,-515.501	0/1:98:51,47:51:1817:47:1688:-122.706,0,-134.308	0/0:27:27,0:27:944:0:0:0,-8.12781,-85.2741	0/1:18:8,10:8:273:10:352:-26.5997,0,-19.4816	0/1:126:62,64:62:2212:64:2291:-168.521,0,-161.415	0/0:100:100,0:100:3560:0:0:0,-30.103,-320.602	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:185:102,83:102:3624:83:2962:-211.115,0,-270.677	0/1:216:120,96:120:4269:96:3434:-244.25,0,-319.367	0/0:93:89,4:89:3180:4:144:0,-14.6822,-272.794	0/0:122:122,0:122:4295:0:0:0,-36.7257,-386.729	0/0:245:242,3:242:8595:3:108:0,-63.6772,-763.475	0/0:205:205,0:205:7320:0:0:0,-61.7111,-658.808	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:80:80,0:80:2799:0:0:0,-24.0824,-252.148	0/1:52:28,24:28:1000:24:854:-61.5091,0,-74.6618	0/1:37:20,17:20:712:17:608:-43.9139,0,-53.2685	0/1:142:80,62:80:2837:62:2202:-155.698,0,-212.822	0/0:175:174,1:174:6198:1:36:0,-49.082,-554.319	0/0:218:218,0:218:7750:0:0:0,-65.6245,-697.536	0/0:184:184,0:184:6540:0:0:0,-55.3895,-588.681	0/1:95:48,47:48:1678:47:1676:-122.525,0,-122.705	0/0:128:128,0:128:4560:0:0:0,-38.5318,-410.569	0/1:20:13,7:13:460:7:235:-15.454,0,-35.7148	0/1:153:76,76:76:2713:76:2717:-198.647,0,-198.273	0/1:107:40,67:40:1432:67:2408:-184.766,0,-96.9674	0/0:370:368,2:368:13046:2:72:0,-104.544,-1167.11	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/0:83:83,0:83:2956:0:0:0,-24.9855,-266.275	0/1:45:23,22:23:828:22:788:-57.6984,0,-61.2978	0/1:116:64,52:64:2288:52:1856:-132.4,0,-171.262	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:89:89,0:89:3161:0:0:0,-26.7917,-284.715	0/0:46:45,1:45:1593:1:36:0,-10.2491,-140.06	0/1:131:76,55:76:2700:55:1972:-138.32,0,-203.811	0/1:93:33,60:33:1180:60:2136:-164.512,0,-78.5123	0/0:152:152,0:152:5425:0:0:0,-45.7566,-488.38	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842
chr04	28538284	.	AA	AG	45164.8	PASS	AB=0.487993;ABP=9.84158;AC=45;AF=0.239362;AN=188;AO=2694;CIGAR=1M1X;DP=11266;DPB=11266;DPRA=1.22678;EPP=5697.66;EPPR=17911.1;GTI=0;LEN=1;MEANALT=1.06897;MQM=59.5189;MQMR=59.9109;NS=94;NUMALT=1;ODDS=10.427;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95936;QR=304133;RO=8564;RPL=18;RPP=5697.66;RPPR=17911.1;RPR=2676;RUN=1;SAF=2694;SAP=5852.96;SAR=0;SRF=8564;SRP=18599.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:17,14:17:590:14:489:-34.6506,0,-43.7338	0/0:319:317,1:317:11236:1:36:0,-92.4141,-1007.59	0/0:113:113,0:113:4018:0:0:0,-34.0164,-361.796	0/0:139:139,0:139:4963:0:0:0,-41.8432,-446.749	0/1:76:33,43:33:1186:43:1548:-116.699,0,-84.1703	0/1:52:26,26:26:907:26:924:-67.8125,0,-66.2894	0/1:150:83,67:83:2971:67:2395:-170.602,0,-222.467	0/1:340:181,159:181:6441:159:5674:-408.373,0,-477.427	0/0:58:58,0:58:2038:0:0:0,-17.4597,-183.67	0/0:107:107,0:107:3814:0:0:0,-32.2102,-343.457	0/1:142:65,76:65:2314:76:2721:-202.201,0,-165.735	0/1:89:48,40:48:1726:40:1428:-101.954,0,-128.775	0/0:78:78,0:78:2766:0:0:0,-23.4803,-249.048	0/0:174:174,0:174:6227:0:0:0,-52.3792,-560.072	0/0:87:86,1:86:3057:1:36:0,-22.5913,-271.753	0/1:83:39,44:39:1354:44:1572:-116.746,0,-97.1674	0/1:100:50,50:50:1776:50:1800:-132.162,0,-130.012	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.589	0/1:50:32,18:32:1148:18:644:-43.2391,0,-88.5721	0/1:191:99,92:99:3530:92:3298:-239.508,0,-260.412	0/1:105:69,36:69:2438:36:1288:-84.6048,0,-188.065	0/0:89:89,0:89:3137:0:0:0,-26.7917,-282.557	0/0:26:24,2:24:862:2:72:0,-0.990057,-71.0656	0/0:91:86,5:86:3075:5:180:0,-10.8417,-260.426	0/0:59:59,0:59:2076:0:0:0,-17.7608,-187.108	0/1:333:170,163:170:6016:163:5765:-418.703,0,-441.28	0/1:201:104,97:104:3681:97:3484:-253.2,0,-270.407	0/1:26:18,8:18:646:8:284:-18.0703,0,-50.6446	0/0:191:191,0:191:6778:0:0:0,-57.4967,-610.093	0/1:236:110,126:110:3914:126:4470:-330.847,0,-281.412	0/1:76:44,32:44:1576:32:1116:-77.8638,0,-119.248	0/1:8:2,6:2:70:6:216:-17.3823,0,-4.23909	0/1:36:16,20:16:554:20:720:-54.281,0,-39.347	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0572	0/1:7:1,6:1:36:6:216:-17.6297,0,-1.49106	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.517	0/0:222:221,0:221:7885:0:0:0,-66.5276,-708.761	0/1:230:107,123:107:3824:123:4319:-318.716,0,-275.118	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:281:278,3:278:9825:3:108:0,-74.5143,-874.091	0/1:45:24,21:24:849:21:741:-53.4546,0,-63.1826	0/1:185:85,100:85:3013:100:3561:-264.988,0,-215.71	0/1:76:32,44:32:1150:44:1584:-119.961,0,-80.9318	0/0:62:62,0:62:2202:0:0:0,-18.6639,-198.444	0/0:64:63,1:63:2250:1:36:0,-15.6676,-199.165	0/0:185:185,0:185:6620:0:0:0,-55.6905,-595.742	0/1:192:93,99:93:3289:99:3506:-257.935,0,-238.414	0/1:163:90,73:90:3213:73:2594:-184.617,0,-240.324	0/0:223:223,0:223:7864:0:0:0,-67.1297,-707.603	0/1:144:72,72:72:2577:72:2525:-184.127,0,-188.83	0/1:17:8,9:8:277:9:320:-24.0248,0,-20.1476	0/0:213:213,0:213:7536:0:0:0,-64.1194,-678.26	0/1:86:55,31:55:1972:31:1104:-73.7771,0,-151.867	0/0:41:41,0:41:1437:0:0:0,-12.3422,-129.623	0/0:127:126,1:126:4484:1:36:0,-34.6325,-400.111	0/1:26:10,16:10:336:16:570:-43.7891,0,-22.737	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.03	0/1:31:9,22:9:316:22:764:-59.721,0,-19.4471	0/1:114:66,48:66:2336:48:1724:-120.901,0,-176.178	0/0:219:216,3:216:7665:3:108:0,-55.8568,-679.8	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1413	0/1:134:82,52:82:2913:52:1849:-126.35,0,-222.066	0/1:270:134,136:134:4719:136:4849:-355.251,0,-343.466	0/0:147:139,8:139:4949:8:288:0,-17.984,-419.102	0/0:79:79,0:79:2788:0:0:0,-23.7814,-251.153	0/0:162:162,0:162:5773:0:0:0,-48.7669,-519.685	0/0:228:225,3:225:7955:3:104:0,-58.932,-706.117	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.942	0/0:124:124,0:124:4377:0:0:0,-37.3277,-394.105	0/1:164:85,79:85:3024:79:2816:-204.303,0,-223.01	0/1:57:31,26:31:1104:26:913:-65.324,0,-82.5116	0/1:127:49,78:49:1734:78:2779:-212.064,0,-118.112	0/0:69:69,0:69:2422:0:0:0,-20.7711,-218.233	0/0:167:167,0:167:5936:0:0:0,-50.272,-534.329	0/0:179:179,0:179:6333:0:0:0,-53.8844,-570.018	0/1:291:181,110:181:6343:110:3921:-264.853,0,-483.188	0/0:165:163,2:163:5808:2:72:0,-42.8332,-515.998	0/1:11:5,6:5:172:6:212:-16.1101,0,-12.5061	0/1:133:61,72:61:2181:72:2561:-190.691,0,-156.518	0/1:116:61,55:61:2167:55:1959:-141.645,0,-160.376	0/0:198:198,0:198:7011:0:0:0,-59.6039,-631.055	0/0:146:145,1:145:5114:1:36:0,-40.3521,-456.804	0/0:93:93,0:93:3320:0:0:0,-27.9958,-299.017	0/1:85:44,41:44:1578:41:1452:-105.372,0,-116.724	0/1:146:75,71:75:2660:71:2537:-184.623,0,-195.696	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.99	0/0:70:69,0:69:2468:0:0:0,-20.7711,-222.011	0/0:108:108,0:108:3841:0:0:0,-32.5112,-345.886	0/1:204:99,105:99:3526:105:3776:-278.201,0,-256.129	0/1:73:23,50:23:818:50:1800:-140.288,0,-51.9665	0/0:126:125,1:125:4475:1:36:0,-34.3315,-399.297	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963
chr04	28572409	.	T	C	31902.3	PASS	AB=0.507054;ABP=4.51151;AC=45;AF=0.241935;AN=186;AO=1774;CIGAR=1X;DP=7336;DPB=7336;DPRA=1.06603;EPP=26.3212;EPPR=6.68435;GTI=0;LEN=1;MEANALT=1;MQM=33.9459;MQMR=35.8684;NS=93;NUMALT=1;ODDS=1.02847;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63400;QR=199218;RO=5561;RPL=818;RPP=26.3212;RPPR=6.68435;RPR=956;RUN=1;SAF=0;SAP=3855.2;SAR=1774;SRF=0;SRP=12078.6;SRR=5561;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:10,24:10:360:24:864:-63.6734,0,-21.1741	0/0:51:51,0:51:1820:0:0:0,-15.3525,-158.002	0/0:170:169,1:169:6068:1:36:0,-47.829,-520.631	0/0:171:171,0:171:6144:0:0:0,-51.4761,-476.573	0/1:34:6,28:6:216:28:1008:-70.8162,0,-7.61885	0/1:23:13,10:13:468:10:360:-23.9286,0,-33.5632	0/1:112:55,57:55:1968:57:2040:-117.837,0,-120.233	0/1:84:49,35:49:1760:35:1248:-81.0168,0,-126.964	0/0:64:64,0:64:2296:0:0:0,-19.2659,-198.646	0/0:91:91,0:91:3272:0:0:0,-27.3937,-254.058	0/1:93:43,50:43:1548:50:1783:-104.795,0,-92.5323	0/1:65:34,31:34:1209:31:1108:-75.3633,0,-85.3103	0/0:77:77,0:77:2768:0:0:0,-23.1793,-239.08	0/0:82:82,0:82:2944:0:0:0,-24.6845,-243.389	0/0:66:66,0:66:2376:0:0:0,-19.868,-184.917	0/1:56:20,36:20:712:36:1281:-86.012,0,-40.6433	0/1:105:60,45:60:2156:45:1601:-105.496,0,-155.06	0/0:52:52,0:52:1860:0:0:0,-15.6536,-161.299	0/1:55:30,25:30:1080:25:874:-58.1339,0,-76.6837	0/1:119:58,61:58:2068:61:2192:-128.101,0,-124.567	0/1:76:40,36:40:1421:36:1288:-79.7621,0,-96.3247	0/0:78:78,0:78:2800:0:0:0,-23.4803,-197.462	0/0:90:90,0:90:3216:0:0:0,-27.0927,-250.676	0/0:89:86,3:86:3065:3:101:0,-17.8176,-244.842	0/0:17:17,0:17:604:0:0:0,-5.11751,-49.778	0/1:325:156,169:156:5604:169:6052:-317.676,0,-295.518	0/1:137:63,74:63:2249:74:2656:-167.624,0,-143.685	0/1:33:17,16:17:612:16:572:-35.9157,0,-39.7334	0/0:285:285,0:285:10232:0:0:0,-85.7935,-724.2	0/1:110:58,52:58:2080:52:1849:-114.34,0,-139.638	0/1:108:60,48:60:2156:48:1705:-95.2553,0,-134.597	0/1:9:4,5:4:144:5:180:-11.6595,0,-9.30152	0/1:10:6,4:6:216:4:144:-8.54716,0,-14.8436	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.65225	0/1:10:3,7:3:108:7:252:-19.0398,0,-6.57578	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.4469	0/0:190:190,0:190:6820:0:0:0,-57.1957,-488.205	0/1:122:37,85:37:1328:85:3048:-207.315,0,-73.258	0/0:74:74,0:74:2648:0:0:0,-22.2762,-228.37	.:.:.:.:.:.:.:.	0/0:91:90,1:90:3205:1:36:0,-24.2701,-260.747	0/1:41:23,18:23:828:18:635:-38.1335,0,-55.2941	0/1:78:34,44:34:1201:44:1580:-101.44,0,-75.8238	0/1:50:17,33:17:608:33:1184:-72.7168,0,-34.309	0/0:71:70,0:70:2520:0:0:0,-21.0721,-195.234	0/0:89:89,0:89:3188:0:0:0,-26.7917,-228.633	0/0:64:64,0:64:2277:0:0:0,-19.2659,-195.668	0/1:125:73,52:73:2609:52:1845:-98.4137,0,-166.89	0/1:77:42,35:42:1493:35:1242:-70.3976,0,-92.8628	0/0:96:96,0:96:3452:0:0:0,-28.8989,-267.725	0/1:144:82,62:82:2948:62:2216:-110.662,0,-163.818	0/1:4:3,1:3:108:1:36:-1.69864,0,-7.34859	0/0:79:77,2:77:2737:2:72:0,-17.2432,-229.799	0/1:58:21,37:21:756:37:1324:-76.9642,0,-36.7585	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.0708	0/0:73:73,0:73:2605:0:0:0,-21.9752,-215.779	0/1:31:21,10:21:752:10:360:-16.1199,0,-49.2126	0/0:6:6,0:6:212:0:0:0,-1.80618,-14.9067	0/1:22:12,10:12:432:10:360:-18.9974,0,-24.2741	0/1:103:56,47:56:2012:47:1688:-105.587,0,-133.341	0/0:129:128,1:128:4588:1:36:0,-35.9301,-358.435	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.226	0/1:125:57,68:57:2044:68:2425:-128.072,0,-103.988	0/1:92:44,48:44:1565:48:1728:-99.7368,0,-95.0016	0/0:58:54,4:54:1940:4:144:0,-5.572,-147.759	0/0:59:59,0:59:2116:0:0:0,-17.7608,-166.264	0/0:134:134,0:134:4770:0:0:0,-40.338,-370.457	0/0:35:35,0:35:1256:0:0:0,-10.536,-98.0936	0/0:37:37,0:37:1324:0:0:0,-11.1381,-110.73	0/0:53:53,0:53:1884:0:0:0,-15.9546,-163.366	0/1:85:46,39:46:1648:39:1378:-71.9857,0,-93.0766	0/1:24:12,12:12:432:12:432:-24.4154,0,-26.4258	0/1:108:63,45:63:2260:45:1616:-104.565,0,-162.731	0/0:50:50,0:50:1796:0:0:0,-15.0515,-155.592	0/0:164:164,0:164:5876:0:0:0,-49.3689,-484.715	0/0:128:127,1:127:4568:1:36:0,-35.6291,-351.979	0/1:63:24,39:24:860:39:1400:-99.3133,0,-55.8052	0/0:92:92,0:92:3293:0:0:0,-27.6948,-283.942	0/1:5:3,2:3:108:2:72:-4.85253,0,-8.22078	0/1:59:32,27:32:1144:27:968:-58.8503,0,-76.4394	0/1:107:53,54:53:1900:54:1924:-131.948,0,-132.819	0/0:180:180,0:180:6425:0:0:0,-54.1854,-499.598	0/0:86:86,0:86:3092:0:0:0,-25.8886,-239.06	0/0:64:64,0:64:2300:0:0:0,-19.2659,-177.983	0/1:58:31,27:31:1116:27:955:-55.9605,0,-69.0357	0/1:116:55,61:55:1965:61:2175:-127.783,0,-118.219	0/0:41:41,0:41:1468:0:0:0,-12.3422,-127.111	0/0:72:72,0:72:2580:0:0:0,-21.6742,-223.256	0/0:51:51,0:51:1816:0:0:0,-15.3525,-157.25	0/0:72:72,0:72:2576:0:0:0,-21.6742,-213.326	0/1:136:72,64:72:2573:64:2283:-143.382,0,-172.97	0/1:42:14,28:14:504:28:1008:-61.4875,0,-26.1494	0/0:25:25,0:25:896:0:0:0,-7.52575,-70.5583	0/0:95:95,0:95:3404:0:0:0,-28.5978,-263.667
chr04	28620714	.	G	A	178034	PASS	AB=0.481324;ABP=20.7736;AC=139;AF=0.755435;AN=184;AO=8553;CIGAR=1X;DP=11628;DPB=11628;DPRA=31.9341;EPP=18566.9;EPPR=6641.25;GTI=2;LEN=1;MEANALT=1.02198;MQM=59.9274;MQMR=59.974;NS=92;NUMALT=1;ODDS=0.9348;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=304375;QR=109659;RO=3073;RPL=5;RPP=18532.2;RPPR=6632.59;RPR=8548;RUN=1;SAF=4;SAP=18540.9;SAR=8549;SRF=1;SRP=6667.26;SRR=3072;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:32,14:32:1139:14:504:-31.8507,0,-88.971	1/1:228:2,226:2:72:226:8042:-716.948,-61.7981,0	1/1:149:0,149:0:0:149:5312:-478.19,-44.8535,0	1/1:230:0,230:0:0:230:8193:-737.354,-69.2369,0	0/1:100:50,50:50:1785:50:1768:-129.225,0,-130.828	0/1:40:20,20:20:720:20:711:-52.2744,0,-53.0876	0/1:172:87,85:87:3105:85:3012:-219.53,0,-227.899	0/1:390:193,197:193:6902:197:7022:-514.641,0,-503.845	1/1:94:2,92:2:72:92:3279:-288.494,-21.4601,0	1/1:176:0,176:0:0:176:6259:-563.402,-52.9813,0	0/1:87:54,33:54:1944:33:1171:-79.5071,0,-149.046	0/1:76:28,48:28:993:48:1724:-132.567,0,-66.8042	1/1:116:0,116:0:0:116:4121:-371.073,-34.9195,0	1/1:100:0,100:0:0:100:3524:-316.744,-30.103,0	1/1:84:0,84:0:0:84:2984:-268.792,-25.2865,0	0/1:59:31,28:31:1108:28:1004:-72.9151,0,-82.2702	0/1:68:32,36:32:1144:36:1279:-94.9424,0,-82.7995	1/1:60:0,60:0:0:60:2135:-192.404,-18.0618,0	0/1:44:23,21:23:805:21:745:-54.0826,0,-59.5222	0/1:254:133,121:133:4728:121:4327:-313.144,0,-349.218	0/1:190:118,72:118:4203:72:2533:-171.025,0,-321.257	1/1:87:0,87:0:0:87:3110:-280.126,-26.1896,0	1/1:135:1,134:1:36:134:4767:-425.588,-37.0408,0	1/1:177:11,166:11:396:166:5927:-497.557,-17.2996,0	1/1:65:2,63:2:72:63:2232:-194.305,-12.7302,0	0/1:435:224,211:224:7980:211:7531:-546.393,0,-587.276	0/1:239:130,108:130:4629:108:3850:-274.691,0,-344.766	0/1:44:23,21:23:824:21:734:-53.1269,0,-61.238	1/1:208:2,206:2:72:206:7283:-648.597,-55.7775,0	0/1:157:77,80:77:2764:80:2853:-209.745,0,-200.377	0/1:205:97,108:97:3463:108:3859:-285.794,0,-249.943	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	.:.:.:.:.:.:.:.	1/1:252:0,252:0:0:252:8970:-807.281,-75.8596,0	0/1:246:95,151:95:3391:151:5384:-410.641,0,-231.352	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	.:.:.:.:.:.:.:.	1/1:212:0,212:0:0:212:7536:-678.28,-63.8184,0	0/1:35:16,18:16:567:18:644:-47.6959,0,-40.7662	0/1:222:128,94:128:4570:94:3324:-232.551,0,-344.635	0/1:123:65,58:65:2299:58:2055:-148.194,0,-170.142	1/1:75:0,75:0:0:75:2677:-241.174,-22.5773,0	1/1:104:0,104:0:0:104:3693:-332.571,-31.3071,0	1/1:162:0,162:0:0:162:5767:-519.146,-48.7669,0	0/1:247:129,118:129:4603:118:4209:-304.635,0,-340.081	0/1:151:81,70:81:2903:70:2464:-176.557,0,-216.049	1/1:187:0,187:0:0:187:6687:-601.892,-56.2926,0	0/1:228:117,111:117:4192:111:3963:-288.227,0,-308.826	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:144:0,144:0:0:144:5151:-463.731,-43.3483,0	0/1:76:47,29:47:1676:29:1021:-69.322,0,-128.249	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:155:0,155:0:0:155:5525:-497.372,-46.6597,0	0/1:83:40,43:40:1428:43:1530:-112.984,0,-103.832	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/1:80:38,42:38:1364:42:1491:-110.401,0,-98.9783	1/1:107:1,106:1:36:106:3808:-339.232,-28.6119,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:217:123,94:123:4399:94:3358:-237.112,0,-330.759	0/1:281:145,136:145:5194:136:4837:-350.827,0,-383.008	1/1:112:2,110:2:72:110:3917:-345.875,-26.8786,0	1/1:113:0,113:0:0:113:4033:-363.155,-34.0164,0	1/1:247:2,245:2:72:245:8726:-778.497,-67.5177,0	1/1:143:0,143:0:0:143:5122:-461.121,-43.0473,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:105:0,105:0:0:105:3721:-335.085,-31.6082,0	0/1:110:57,53:57:2030:53:1878:-136.182,0,-149.858	0/1:22:13,9:13:464:9:320:-22.5197,0,-35.4748	0/1:100:55,45:55:1955:45:1573:-111.755,0,-146.122	1/1:57:0,57:0:0:57:2032:-183.12,-17.1587,0	1/1:269:0,269:0:0:269:9536:-858.123,-80.9771,0	1/1:195:0,195:0:0:195:6950:-625.557,-58.7009,0	0/1:176:79,97:79:2819:97:3463:-258.901,0,-200.968	1/1:141:2,139:2:72:139:4947:-437.609,-35.6085,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:184:84,100:84:3005:100:3567:-265.849,0,-215.29	0/1:138:74,64:74:2652:64:2276:-163.56,0,-197.384	1/1:252:0,252:0:0:252:8914:-802.248,-75.8596,0	1/1:96:0,96:0:0:96:3392:-305.494,-28.8989,0	1/1:90:1,89:1:36:89:3161:-281.116,-23.4944,0	0/1:151:82,69:82:2890:69:2472:-177.276,0,-214.88	0/1:169:87,82:87:3075:82:2906:-210.9,0,-226.102	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:94:0,94:0:0:94:3360:-302.584,-28.2968,0	1/1:73:0,73:0:0:73:2582:-232.627,-21.9752,0	1/1:42:0,42:0:0:42:1499:-135.204,-12.6433,0	0/1:89:49,40:49:1752:40:1427:-101.879,0,-131.172	0/1:81:56,25:56:2008:25:891:-56.1253,0,-156.61	1/1:121:2,119:2:72:119:4222:-373.234,-29.5879,0	1/1:121:0,121:0:0:121:4279:-385.275,-36.4246,0
chr04	28620726	.	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chr04	28660247	.	T	C	25763.8	PASS	AB=0.49172;ABP=4.88026;AC=45;AF=0.239362;AN=188;AO=1556;CIGAR=1X;DP=7260;DPB=7260;DPRA=0.994904;EPP=3381.82;EPPR=12371.7;GTI=2;LEN=1;MEANALT=1;MQM=59.9261;MQMR=59.9989;NS=94;NUMALT=1;ODDS=1.99643;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55685;QR=204206;RO=5700;RPL=0;RPP=3381.82;RPPR=12380.4;RPR=1556;RUN=1;SAF=1556;SAP=3381.82;SAR=0;SRF=5699;SRP=12371.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:31,34:31:1108:34:1212:-89.8194,0,-80.464	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:147:146,0:146:5244:0:0:0,-43.9504,-471.775	0/0:308:307,1:307:11000:1:36:0,-89.119,-986.295	0/1:89:38,51:38:1368:51:1832:-138.369,0,-96.6292	0/1:22:15,7:15:536:7:248:-16.0415,0,-41.9522	0/1:55:23,32:23:824:32:1148:-87.0732,0,-57.9267	0/1:99:41,58:41:1460:58:2076:-157.289,0,-101.894	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/1:36:17,19:17:612:19:680:-50.6921,0,-44.5764	0/1:132:80,52:80:2872:52:1848:-126.864,0,-218.981	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/1:57:30,27:30:1057:27:964:-69.9181,0,-78.2803	0/1:28:10,18:10:356:18:644:-49.8618,0,-23.9524	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:42:19,23:19:684:23:816:-61.1185,0,-49.2471	0/1:65:32,33:32:1140:33:1188:-87.6616,0,-83.3423	0/1:101:64,37:64:2296:37:1328:-89.4182,0,-176.497	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.223	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:172:93,79:93:3336:79:2824:-202.62,0,-248.68	0/1:195:77,118:77:2752:118:4224:-321.639,0,-189.222	0/1:39:24,15:24:864:15:532:-36.4729,0,-66.3424	0/0:180:180,0:180:6440:0:0:0,-54.1854,-579.687	0/1:64:35,29:35:1260:29:1040:-74.6484,0,-94.4396	0/1:79:38,41:38:1364:41:1468:-108.635,0,-99.2793	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:163:163,0:163:5824:0:0:0,-49.0679,-524.274	0/1:52:28,24:28:1008:24:856:-61.7075,0,-75.3828	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:118:118,0:118:4224:0:0:0,-35.5215,-380.34	0/1:36:22,14:22:792:14:500:-34.005,0,-60.7686	0/1:174:85,89:85:3044:89:3184:-234.405,0,-221.81	0/1:57:29,28:29:1040:28:1008:-73.8776,0,-76.7557	0/0:56:56,0:56:1985:0:0:0,-16.8577,-178.923	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:90:90,0:90:3225:0:0:0,-27.0927,-290.47	0/1:123:67,56:67:2400:56:2004:-143.607,0,-179.23	0/1:66:33,33:33:1176:33:1180:-86.6401,0,-86.2798	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/1:43:26,17:26:928:17:604:-41.7463,0,-70.894	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/1:60:23,37:23:824:37:1328:-101.76,0,-56.4215	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:122:121,0:121:4332:0:0:0,-36.4246,-389.844	0/1:37:10,27:10:360:27:968:-76.2993,0,-21.6062	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:74:27,47:27:968:47:1678:-128.993,0,-65.1611	0/0:82:81,1:81:2904:1:36:0,-21.0862,-257.997	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:168:78,90:78:2784:90:3216:-239.09,0,-200.228	0/1:170:105,65:105:3768:65:2328:-158.605,0,-288.143	0/0:55:51,4:51:1832:4:136:0,-3.98169,-152.586	0/0:92:92,0:92:3260:0:0:0,-27.6948,-293.623	0/0:138:138,0:138:4936:0:0:0,-41.5421,-444.391	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.372	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:57:56,1:56:2004:1:36:0,-13.5604,-177.035	0/1:44:27,17:27:972:17:608:-41.8067,0,-74.5526	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:64:31,33:31:1116:33:1175:-86.2988,0,-81.4858	0/0:88:87,0:87:3120:0:0:0,-26.1896,-280.666	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.186	0/0:165:164,0:164:5900:0:0:0,-49.3689,-530.746	0/1:111:57,54:57:2044:54:1940:-141.462,0,-150.817	0/0:108:105,3:105:3749:3:108:0,-22.4361,-327.534	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:86:44,42:44:1576:42:1508:-110.126,0,-116.243	0/1:99:65,34:65:2336:34:1216:-79.9446,0,-180.697	0/0:109:108,1:108:3880:1:36:0,-29.214,-345.795	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:43:17,26:17:608:26:932:-71.2546,0,-42.1077	0/1:129:73,56:73:2624:56:2004:-141.801,0,-197.574	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.291	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:49:26,23:26:936:23:828:-60.0936,0,-69.809	0/1:60:25,35:25:896:35:1260:-95.6437,0,-62.8986	0/0:148:147,1:147:5264:1:36:0,-40.9542,-470.293	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.889
chr04	28709864	.	T	C	52663.1	PASS	AB=0.598205;ABP=320.325;AC=45;AF=0.241935;AN=186;AO=2289;CIGAR=1X;DP=6871;DPB=6871;DPRA=1.43534;EPP=587.596;EPPR=9668.01;GTI=7;LEN=1;MEANALT=1.07843;MQM=57.2272;MQMR=59.9685;NS=93;NUMALT=1;ODDS=0.174197;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81916;QR=164132;RO=4578;RPL=1537;RPP=587.596;RPPR=9668.01;RPR=752;RUN=1;SAF=2289;SAP=4973.51;SAR=0;SRF=4578;SRP=9944.01;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:5,21:5:180:21:747:-59.6176,0,-8.72528	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.87	0/0:67:67,0:67:2385:0:0:0,-20.169,-214.905	0/0:124:124,0:124:4444:0:0:0,-37.3277,-400.13	0/1:58:19,39:19:680:39:1400:-108.32,0,-44.0694	0/1:45:16,29:16:576:29:1044:-80.7285,0,-38.6286	0/1:88:44,44:44:1561:44:1558:-113.755,0,-114.289	0/1:173:62,111:62:2209:111:3987:-306.809,0,-146.995	0/0:32:31,1:31:1112:1:36:0,-6.03468,-96.7931	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/1:27:14,13:14:504:13:459:-33.4408,0,-37.5703	0/1:36:14,22:14:504:22:792:-60.7686,0,-34.861	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:33:18,15:18:648:15:540:-38.974,0,-48.6894	0/1:43:22,21:22:792:21:756:-55.3667,0,-58.6507	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:20:9,11:9:324:11:396:-29.9606,0,-23.4853	0/1:252:80,172:80:2872:172:6155:-476.303,0,-182.857	0/1:89:38,51:38:1364:51:1832:-138.365,0,-96.269	0/0:70:70,0:70:2490:0:0:0,-21.0721,-224.35	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:64:53,11:53:1885:11:387:-15.9,0,-150.661	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:409:157,252:157:5629:252:8999:-686.312,0,-383.596	0/1:166:73,93:73:2616:93:3327:-249.645,0,-185.717	0/1:22:10,12:10:360:12:432:-32.57,0,-26.1216	0/0:174:174,0:174:6249:0:0:0,-52.3792,-562.497	0/1:113:41,71:41:1457:71:2544:-195.197,0,-97.4952	0/1:106:43,62:43:1544:62:2212:-166.426,0,-107.286	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:121:121,0:121:4352:0:0:0,-36.4246,-391.853	0/1:214:74,139:74:2656:139:4974:-382.889,0,-174.794	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:98:96,2:96:3441:2:72:0,-22.6642,-303.064	0/1:20:9,11:9:324:11:392:-29.5995,0,-23.4399	0/1:90:22,68:22:780:68:2448:-193.367,0,-43.4303	0/1:38:16,22:16:576:22:771:-57.7207,0,-40.7358	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:171:61,110:61:2180:110:3956:-303.16,0,-144.99	0/1:118:39,79:39:1392:79:2827:-218.394,0,-90.0575	0/0:120:120,0:120:4293:0:0:0,-36.1236,-386.546	0/1:146:61,85:61:2192:85:3032:-228.969,0,-153.595	0/1:12:7,5:7:252:5:180:-12.9082,0,-19.4166	0/0:105:104,1:104:3736:1:36:0,-28.0099,-332.841	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.633	0/1:13:5,8:5:180:8:288:-22.1509,0,-12.6387	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:20:9,11:9:324:11:396:-29.9273,0,-23.4853	0/1:33:16,17:16:576:17:604:-44.7566,0,-42.241	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:176:80,96:80:2876:96:3431:-255.927,0,-206.095	0/1:192:91,101:91:3268:101:3620:-267.418,0,-236.542	0/0:91:83,8:83:2980:8:288:0,-1.12632,-242.164	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:115:114,1:114:4092:1:36:0,-31.027,-364.873	0/0:93:92,1:92:3292:1:36:0,-24.4044,-292.908	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.806	0/1:78:39,39:39:1404:39:1400:-102.754,0,-103.176	0/1:24:13,11:13:468:11:392:-28.3305,0,-35.2349	0/1:67:31,35:31:1116:35:1256:-93.1175,0,-80.5239	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.746	0/0:162:162,0:162:5789:0:0:0,-48.7669,-521.124	0/1:134:37,97:37:1315:97:3451:-269.662,0,-78.2569	0/0:95:95,0:95:3401:0:0:0,-28.5978,-306.303	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:109:49,60:49:1764:60:2156:-161.495,0,-126.231	0/1:101:44,57:44:1584:57:2024:-152.025,0,-112.447	0/0:169:169,0:169:6061:0:0:0,-50.8741,-545.589	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.923	0/0:37:35,2:35:1260:2:72:0,-4.31441,-106.882	0/1:59:27,32:27:972:32:1152:-85.6845,0,-70.0371	0/1:84:36,48:36:1296:48:1728:-130.086,0,-91.6574	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:35:8,27:8:284:27:963:-76.4499,0,-15.3673	0/1:59:14,45:14:504:45:1612:-127.171,0,-27.9373	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.185	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759
chr04	28804953	.	TGGATA	GGGATACTAATTA,GGGATA	130634	PASS	AB=0.528249,0.464776;ABP=32.8227,49.3625;AC=140,46;AF=0.752688,0.247312;AN=186;AO=6219,2110;CIGAR=1X3M7I2M,1X5M;DP=8392;DPB=15703.7;DPRA=18.2326,2.87311;EPP=13507.4,4584.82;EPPR=22.5536;GTI=7;LEN=13,1;MEANALT=2.38043,2.5974;MQM=30.4432,48.1152;MQMR=55.1111;NS=93;NUMALT=2;ODDS=1.79826;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=188861,73078;QR=286;RO=9;RPL=6219,185;RPP=13507.4,3118.82;RPPR=3.25157;RPR=0,1925;RUN=1,1;SAF=6219,185;SAP=13507.4,3118.82;SAR=0,1925;SRF=5;SRP=3.25157;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:36:0,12,24:0:0:12,24:360,836:-93.4855,-67.9722,-64.3598,-25.8088,0,-18.5841	1/1:171:0,168,3:0:0:168,3:5024,104:-406.725,-50.573,0,-398.27,-41.7733,-397.367	1/1:93:0,88,4:0:0:88,4:2628,138:-213,-26.4906,0,-202.056,-15.4642,-200.852	1/1:109:0,106,3:0:0:106,3:3167,98:-256.47,-31.9092,0,-248.825,-23.9486,-247.922	1/2:43:0,14,29:0:0:14,29:434,988:-110.514,-79.4776,-75.2632,-31.3347,0,-22.6048	1/2:78:1,43,34:1:36:43,34:1287,1204:-185.457,-94.5597,-84.5531,-88.2164,0,-80.9209	1/2:62:0,41,21:0:0:41,21:1231,703:-143.611,-56.3029,-43.9606,-87.6179,0,-81.2963	1/2:141:0,72,68:0:0:72,68:2155,2396:-345.876,-193.09,-171.416,-152.865,0,-132.395	1/1:105:0,99,2:0:0:99,2:2972,68:-240.827,-29.802,0,-235.31,-24.2462,-234.708	1/1:129:0,125,4:0:0:125,4:3730,144:-302.49,-37.6288,0,-290.737,-25.5193,-289.533	1/2:54:0,22,32:0:0:22,32:657,1091:-134.57,-87.9066,-81.284,-46.9605,0,-37.3275	1/2:94:0,38,56:0:0:38,56:1140,1966:-239.768,-158.926,-147.487,-81.143,0,-64.2853	1/1:79:0,78,0:0:0:78,0:2331,0:-188.712,-23.4803,0,-188.712,-23.4803,-188.712	1/1:56:0,49,5:0:0:49,5:1512,153:-122.889,-14.7505,0,-110.625,-2.44552,-109.12	1/1:83:0,81,2:0:0:81,2:2424,72:-196.367,-24.3834,0,-190.49,-18.1488,-189.888	1/2:52:0,28,23:0:0:28,23:868,797:-126.202,-64.1269,-55.6981,-62.0399,0,-55.1162	1/2:71:0,46,24:0:0:46,24:1380,852:-166.807,-68.9597,-55.1123,-97.8868,0,-90.6621	1/1:59:0,59,0:0:0:59,0:1758,0:-142.713,-17.7608,0,-142.713,-17.7608,-142.713	1/2:43:0,27,16:0:0:27,16:809,552:-102.393,-44.9871,-36.8593,-57.722,0,-52.9056	1/2:223:1,147,74:1:25:147,74:4406,2570:-517.177,-204.724,-162.413,-310.89,0,-290.555	1/2:148:0,37,111:0:0:37,111:1138,3822:-389.493,-307.942,-296.804,-81.8453,0,-48.431	1/1:107:0,104,1:0:0:104,1:3283,27:-267.6,-31.3071,0,-265.471,-29.1632,-265.17	1/1:68:0,66,2:0:0:66,2:1979,70:-160.335,-19.868,0,-154.936,-14.1375,-154.334	1/2:139:0,124,14:0:0:124,14:3823,479:-312.517,-38.7728,-1.44504,-273.878,0,-269.664	1/1:110:0,101,9:0:0:101,9:3125,296:-254.063,-30.404,0,-230.138,-6.15472,-227.429	1/2:258:0,115,141:0:0:115,141:3646,4847:-652.347,-389.336,-354.718,-263.042,0,-220.597	1/2:260:2,117,140:2:59:117,140:3621,4882:-647.939,-389.427,-358.913,-254.437,0,-217	1/2:31:0,19,12:0:0:19,12:589,420:-76.4493,-34.3454,-28.6258,-42.4257,0,-38.8133	1/1:262:0,259,1:0:0:259,1:8168,36:-665.721,-77.9668,0,-662.783,-75.006,-662.482	1/2:64:0,27,37:0:0:27,37:832,1298:-164.661,-105.249,-97.1212,-59.7198,0,-48.5816	1/2:137:0,65,72:0:0:65,72:1946,2463:-335.493,-197.391,-177.824,-138.405,0,-116.73	.:.:.:.:.:.:.:.	2/2:5:0,0,5:0:0:0,5:0,171:-15.6311,-15.6311,-15.6311,-1.50515,-1.50515,0	1/1:5:0,5,0:0:0:5,0:151,0:-12.5082,-1.50515,0,-12.5082,-1.50515,-12.5082	1/2:4:0,1,3:0:0:1,3:30,108:-11.2237,-9.11746,-8.81643,-2.39816,0,-1.49507	1/1:9:0,9,0:0:0:9,0:271,0:-22.2244,-2.70927,0,-22.2244,-2.70927,-22.2244	1/1:275:0,269,3:0:0:269,3:8430,84:-687.186,-80.9771,0,-681.07,-74.8801,-680.167	1/2:105:1,62,41:1:31:62,41:1907,1442:-250.116,-114.082,-97.9039,-133.916,0,-124.061	1/1:66:0,65,1:0:0:65,1:1947,36:-157.684,-19.567,0,-154.745,-16.2697,-154.444	1/1:1:0,1,0:0:0:1,0:31,0:-2.79914,-0.30103,0,-2.79914,-0.30103,-2.79914	1/2:116:0,102,11:0:0:102,11:3158,387:-257.178,-31.1909,-0.4858,-226.028,0,-222.717	1/2:34:0,18,16:0:0:18,16:553,559:-84.8759,-45.4348,-40.0162,-39.755,0,-34.9386	1/2:109:0,42,67:0:0:42,67:1297,2307:-278.939,-186.249,-173.606,-92.9934,0,-72.8244	1/2:87:0,49,38:0:0:49,38:1467,1302:-208.991,-104.877,-90.1262,-104.423,0,-92.9842	1/1:74:0,71,1:0:0:71,1:2126,36:-172.143,-21.3731,0,-169.205,-18.4191,-168.904	1/1:25:0,24,1:0:0:24,1:768,36:-62.5536,-7.22472,0,-59.6134,-3.92748,-59.3123	1/1:89:0,86,2:0:0:86,2:2581,68:-209.097,-25.8886,0,-203.58,-20.2995,-202.978	1/2:183:0,97,84:0:0:97,84:2911,2854:-435.403,-228.682,-199.483,-206.8,0,-181.513	1/2:98:0,48,49:0:0:48,49:1429,1734:-241.405,-139.985,-125.536,-101.375,0,-86.6248	1/1:114:0,108,6:0:0:108,6:3243,198:-262.589,-32.5112,0,-247.418,-17.0282,-245.612	1/2:108:0,82,25:0:0:82,25:2600,877:-258.317,-70.819,-46.1346,-187.581,0,-180.055	1/1:3:0,3,0:0:0:3,0:88,0:-7.45378,-0.90309,0,-7.45378,-0.90309,-7.45378	1/1:93:0,91,2:0:0:91,2:2724,72:-220.435,-27.3937,0,-214.558,-21.1591,-213.956	1/2:35:0,12,23:0:0:12,23:384,763:-89.2437,-61.5592,-57.9468,-27.9879,0,-21.0642	1/1:15:0,15,0:0:0:15,0:444,0:-36.2456,-4.51545,0,-36.2456,-4.51545,-36.2456	1/1:124:0,113,10:0:0:113,10:3495,347:-284.1,-34.0164,0,-256.181,-6.04495,-253.171	1/2:27:0,8,19:0:0:8,19:240,655:-69.589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chr04	28804965	.	A	G	24390.5	PASS	AB=0.323836;ABP=1630.31;AC=42;AF=0.225806;AN=186;AO=1987;CIGAR=1X;DP=15775;DPB=15775;DPRA=0.96515;EPP=4317.73;EPPR=29941.1;GTI=5;LEN=1;MEANALT=1.01961;MQM=47.2536;MQMR=31.6034;NS=93;NUMALT=1;ODDS=2.70261;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70529;QR=492528;RO=13787;RPL=10;RPP=4231.3;RPPR=308.634;RPR=1977;RUN=1;SAF=10;SAP=4231.3;SAR=1977;SRF=6197;SRP=308.634;SRR=7590;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:30,23:30:1052:23:815:-57.3294,0,-65.2958	0/0:244:244,0:244:8689:0:0:0,-73.4513,-644.8	0/0:298:298,0:298:10662:0:0:0,-89.7069,-810.741	0/0:367:367,0:367:13125:0:0:0,-110.478,-993.533	0/1:70:41,29:41:1468:29:1040:-71.1597,0,-91.3034	0/1:108:72,36:72:2571:36:1262:-80.768,0,-159.452	0/1:126:106,19:106:3779:19:684:-23.0206,0,-247.638	0/1:213:142,71:142:5059:71:2510:-160.172,0,-318.031	0/0:185:185,0:185:6612:0:0:0,-55.6905,-495.571	0/0:181:181,0:181:6461:0:0:0,-54.4864,-481.403	0/1:77:46,31:46:1652:31:1105:-75.6103,0,-100.955	0/1:146:89,57:89:3183:57:2039:-138.285,0,-198.35	0/0:143:143,0:143:5087:0:0:0,-43.0473,-381.629	0/0:137:137,0:137:4896:0:0:0,-41.2411,-373.695	0/0:144:144,0:144:5125:0:0:0,-43.3483,-384.539	0/1:81:55,26:55:1958:26:907:-56.8893,0,-125.685	0/1:86:63,23:63:2251:23:820:-47.7225,0,-141.162	0/0:90:90,0:90:3232:0:0:0,-27.0927,-238.441	0/1:59:41,18:41:1459:18:631:-39.0827,0,-91.8966	0/1:299:224,75:224:7990:75:2608:-141.523,0,-505.894	0/1:252:136,116:136:4872:116:4104:-290.317,0,-296.117	0/0:184:184,0:184:6574:0:0:0,-55.3895,-503.369	0/0:224:223,1:223:7950:1:36:0,-63.8639,-603.55	0/0:252:245,7:245:8780:7:252:0,-53.2888,-642.926	0/0:176:176,0:176:6263:0:0:0,-52.9813,-476.014	0/1:434:295,139:295:10564:139:4949:-309.014,0,-679.524	0/1:384:252,132:252:9023:132:4702:-303.571,0,-572.53	0/1:47:38,9:38:1356:9:324:-15.1538,0,-89.1869	0/0:614:614,0:614:21937:0:0:0,-184.832,-1690.69	0/1:132:96,36:96:3412:36:1280:-75.0133,0,-223.93	0/1:186:114,72:114:4055:72:2551:-170.498,0,-247.402	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:176:-16.0843,-1.50515,0	0/0:7:7,0:7:248:0:0:0,-2.10721,-18.2327	0/1:6:3,3:3:108:3:104:-7.85285,0,-6.73386	0/0:18:18,0:18:631:0:0:0,-5.41854,-48.5778	0/0:448:448,0:448:16006:0:0:0,-134.861,-1224.13	0/1:143:107,36:107:3839:36:1253:-69.2845,0,-246.858	0/0:120:120,0:120:4276:0:0:0,-36.1236,-319.755	0/0:7:7,0:7:252:0:0:0,-2.10721,-19.8606	0/0:290:286,4:286:10206:4:144:0,-74.077,-769.949	0/1:57:40,17:40:1432:17:608:-37.1022,0,-91.8335	0/1:196:126,70:126:4506:70:2495:-163.838,0,-284.111	0/1:117:79,38:79:2823:38:1355:-85.9397,0,-175.75	0/0:123:123,0:123:4402:0:0:0,-37.0267,-329.886	0/0:102:102,0:102:3639:0:0:0,-30.7051,-283.235	0/0:231:231,0:231:8263:0:0:0,-69.5379,-626.673	0/1:294:211,83:211:7495:83:2962:-174.942,0,-478.722	0/1:133:84,49:84:3011:49:1721:-113.85,0,-179.994	0/0:331:330,1:330:11819:1:36:0,-96.0741,-897.26	0/1:154:127,27:127:4547:27:959:-39.4214,0,-301.856	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.12774	0/0:270:270,0:270:9648:0:0:0,-81.2781,-733.525	0/1:72:48,24:48:1724:24:864:-55.7238,0,-111.823	0/0:21:21,0:21:743:0:0:0,-6.32163,-55.5934	0/0:349:349,0:349:12528:0:0:0,-105.059,-952.443	0/1:69:50,19:50:1792:19:658:-37.7733,0,-114.738	0/0:12:12,0:12:428:0:0:0,-3.61236,-33.4334	0/0:6:6,0:6:216:0:0:0,-1.80618,-16.7242	0/1:128:86,42:86:3071:42:1467:-92.9562,0,-197.899	0/0:198:197,1:197:7035:1:36:0,-56.0371,-522.869	0/0:24:24,0:24:852:0:0:0,-7.22472,-63.9067	0/1:326:215,111:215:7694:111:3962:-254.352,0,-486.255	0/1:262:180,82:180:6456:82:2905:-179.051,0,-403.171	0/0:121:118,3:118:4219:3:108:0,-26.419,-313.346	0/0:195:195,0:195:6962:0:0:0,-58.7008,-527.933	0/0:260:260,0:260:9264:0:0:0,-78.2678,-701.194	0/0:311:304,7:304:10858:7:252:0,-70.7927,-804.638	0/0:68:68,0:68:2432:0:0:0,-20.47,-184.196	0/0:157:157,0:157:5640:0:0:0,-47.2617,-423.206	0/1:85:67,18:67:2384:18:648:-30.7769,0,-156.415	0/1:36:25,11:25:896:11:396:-24.831,0,-56.3111	0/1:143:75,68:75:2654:68:2435:-174.247,0,-162.515	0/0:205:205,0:205:7342:0:0:0,-61.7111,-549.815	0/0:359:359,0:359:12848:0:0:0,-108.07,-980.262	0/0:293:293,0:293:10477:0:0:0,-88.2018,-794.291	0/1:114:74,40:74:2622:40:1432:-94.1029,0,-165.1	0/0:259:258,1:258:9212:1:36:0,-74.388,-689.385	0/0:18:17,1:17:608:1:32:0,-2.21923,-40.7717	0/1:196:124,72:124:4435:72:2588:-172.519,0,-280.343	0/1:215:163,52:163:5836:52:1827:-99.1521,0,-378.232	0/0:466:465,1:465:16597:1:36:0,-136.713,-1249.44	0/0:166:166,0:166:5913:0:0:0,-49.971,-437.648	0/0:123:123,0:123:4420:0:0:0,-37.0267,-330.277	0/1:106:79,27:79:2815:27:944:-52.6022,0,-178.944	0/1:197:143,54:143:5103:54:1895:-109.825,0,-322.072	0/0:47:47,0:47:1670:0:0:0,-14.1484,-125.028	0/0:147:147,0:147:5203:0:0:0,-44.2514,-389.029	0/0:130:130,0:130:4651:0:0:0,-39.1339,-344.832	0/0:89:89,0:89:3165:0:0:0,-26.7917,-242.614	0/1:112:68,44:68:2411:44:1572:-107.024,0,-150.354	0/1:123:67,56:67:2388:56:2004:-141.035,0,-142.212	0/0:312:312,0:312:11181:0:0:0,-93.9214,-859.842	0/0:208:208,0:208:7427:0:0:0,-62.6142,-558.081
chr04	28887055	.	CG	TG	27103.2	PASS	AB=0.505174;ABP=3.75183;AC=47;AF=0.252688;AN=186;AO=1629;CIGAR=1X1M;DP=5961;DPB=5961;DPRA=1.27873;EPP=3540.34;EPPR=9372.91;GTI=3;LEN=1;MEANALT=1.18182;MQM=59.5574;MQMR=59.9935;NS=93;NUMALT=1;ODDS=0.332023;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58160;QR=151248;RO=4315;RPL=0;RPP=3540.34;RPPR=9372.91;RPR=1629;RUN=1;SAF=0;SAP=3540.34;SAR=1629;SRF=0;SRP=9372.91;SRR=4315;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:22,19:22:751:19:668:-47.7445,0,-55.228	0/0:80:79,1:79:2774:1:36:0,-20.4841,-246.303	0/0:84:84,0:84:2957:0:0:0,-25.2865,-266.363	0/0:132:132,0:132:4669:0:0:0,-39.736,-420.376	0/1:61:22,39:22:761:39:1391:-107.11,0,-50.4439	0/1:31:9,22:9:311:22:773:-60.3996,0,-18.9915	0/1:95:55,40:55:1934:40:1440:-101.298,0,-145.737	0/1:80:41,38:41:1441:38:1356:-98.2983,0,-105.951	0/0:57:57,0:57:2011:0:0:0,-17.1587,-181.263	0/0:72:72,0:72:2549:0:0:0,-21.6742,-229.66	0/1:35:15,20:15:538:20:720:-54.5857,0,-38.2197	0/1:65:38,27:38:1332:27:960:-67.1412,0,-100.611	0/0:46:46,0:46:1601:0:0:0,-13.8474,-144.377	0/0:53:53,0:53:1848:0:0:0,-15.9546,-166.598	0/0:45:45,0:45:1567:0:0:0,-13.5463,-141.319	0/1:32:12,20:12:415:20:720:-55.4949,0,-28.0475	0/1:35:17,18:17:604:18:648:-48.1126,0,-44.1548	0/0:23:23,0:23:786:0:0:0,-6.92369,-71.052	0/1:21:9,9:9:301:9:324:-23.7337,0,-21.6487	0/1:222:101,121:101:3549:121:4330:-322.961,0,-252.792	0/1:81:43,38:43:1496:38:1360:-98.2864,0,-110.546	0/0:36:36,0:36:1264:0:0:0,-10.8371,-114.06	0/0:59:59,0:59:2085:0:0:0,-17.7608,-187.919	0/0:111:108,3:108:3840:3:100:0,-24.0839,-336.467	0/0:42:42,0:42:1454:0:0:0,-12.6433,-131.15	0/1:224:125,98:125:4394:98:3516:-249.241,0,-328.296	0/1:101:48,53:48:1664:53:1872:-138.321,0,-119.64	0/1:24:14,10:14:497:10:352:-24.7818,0,-37.84	0/0:96:96,0:96:3308:0:0:0,-28.8989,-297.938	0/1:79:27,52:27:911:52:1872:-144.978,0,-58.5124	0/1:83:42,40:42:1493:40:1436:-104.591,0,-109.727	0/1:12:5,7:5:158:7:252:-19.4166,0,-10.9186	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6078	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	0/0:161:161,0:161:5600:0:0:0,-48.4658,-504.133	0/1:126:53,73:53:1856:73:2624:-198.306,0,-129.387	0/0:31:31,0:31:1089:0:0:0,-9.33193,-98.3175	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:80:80,0:80:2782:0:0:0,-24.0824,-250.619	0/1:24:10,14:10:355:14:491:-37.2904,0,-25.0657	0/1:146:75,71:75:2639:71:2544:-185.159,0,-193.805	0/1:45:24,21:24:825:21:743:-53.6423,0,-61.0175	0/0:51:51,0:51:1776:0:0:0,-15.3525,-160.119	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.103	0/1:50:45,5:45:1569:5:180:-1.50057,0,-126.447	0/1:105:58,47:58:2024:47:1684:-120.229,0,-150.822	0/1:116:56,60:56:1981:60:2129:-156.903,0,-143.644	0/0:65:65,0:65:2261:0:0:0,-19.5669,-203.751	0/1:177:93,84:93:3286:84:2985:-215.475,0,-242.678	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/0:62:61,1:61:2125:1:36:0,-15.0656,-187.916	0/1:26:13,13:13:457:13:468:-34.632,0,-33.6358	0/0:18:18,0:18:620:0:0:0,-5.41854,-56.1209	0/0:86:85,1:85:2934:1:36:0,-22.2903,-260.688	0/1:26:5,21:5:180:21:739:-59.0032,0,-8.72528	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:6,4:6:208:4:144:-10.3009,0,-16.049	0/1:64:27,37:27:959:37:1324:-100.11,0,-67.3596	0/0:103:100,3:100:3530:3:104:0,-21.3033,-308.208	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:221:109,111:109:3827:111:3980:-291.797,0,-278.042	0/1:149:53,96:53:1867:96:3425:-263.595,0,-123.453	0/0:46:41,4:41:1444:4:144:0,-0.59256,-116.94	0/0:76:76,0:76:2710:0:0:0,-22.8783,-244.146	0/0:90:90,0:90:3169:0:0:0,-27.0927,-285.438	0/0:65:65,0:65:2301:0:0:0,-19.5669,-207.35	0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7713	0/0:67:67,0:67:2334:0:0:0,-20.169,-210.316	0/1:50:27,23:27:955:23:807:-57.8968,0,-71.2146	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:81:34,46:34:1196:46:1648:-123.951,0,-83.5036	0/0:61:61,0:61:2143:0:0:0,-18.3628,-193.135	0/0:88:88,0:88:3061:0:0:0,-26.4906,-275.717	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.852	0/1:73:36,37:36:1233:37:1320:-97.1177,0,-89.2908	0/0:42:41,0:41:1453:0:0:0,-12.3422,-130.704	0/1:17:11,6:11:385:6:216:-14.673,0,-29.8664	0/1:64:32,32:32:1114:32:1148:-84.3639,0,-81.2987	0/1:44:26,18:26:891:18:644:-45.0453,0,-67.2535	0/0:108:106,1:106:3727:1:36:0,-28.9518,-332.053	0/0:77:77,0:77:2714:0:0:0,-23.1793,-244.504	0/0:34:33,0:33:1145:0:0:0,-9.93399,-103.11	0/1:47:26,21:26:916:21:743:-53.0379,0,-68.606	0/1:86:43,42:43:1530:42:1489:-108.301,0,-112.156	0/0:25:24,1:24:837:1:36:0,-3.92747,-72.0487	0/0:62:62,0:62:2185:0:0:0,-18.6639,-196.916	0/0:48:48,0:48:1680:0:0:0,-14.4494,-151.484	0/0:11:11,0:11:385:0:0:0,-3.31133,-34.9852	0/1:48:27,21:27:921:21:744:-52.8002,0,-68.75	0/1:43:18,25:18:626:25:887:-67.2015,0,-43.7186	0/0:58:57,1:57:1972:1:36:0,-13.8615,-174.152	0/0:73:72,0:72:2512:0:0:0,-21.6742,-225.972
chr04	28887063	.	A	T	26981.5	PASS	AB=0.509704;ABP=5.58111;AC=47;AF=0.252688;AN=186;AO=1614;CIGAR=1X;DP=5902;DPB=5902;DPRA=1.20582;EPP=3507.77;EPPR=9281.73;GTI=3;LEN=1;MEANALT=1.01887;MQM=59.5118;MQMR=59.9937;NS=93;NUMALT=1;ODDS=0.310525;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57612;QR=153581;RO=4285;RPL=0;RPP=3507.77;RPPR=9281.73;RPR=1614;RUN=1;SAF=0;SAP=3507.77;SAR=1614;SRF=0;SRP=9307.77;SRR=4285;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:21,23:21:756:23:820:-60.8049,0,-55.1219	0/0:80:79,1:79:2832:1:36:0,-20.4841,-251.52	0/0:84:83,0:83:2984:0:0:0,-24.9855,-268.432	0/0:130:130,0:130:4653:0:0:0,-39.1339,-418.93	0/1:58:21,37:21:756:37:1317:-101.342,0,-50.9075	0/1:29:8,21:8:288:21:741:-58.1237,0,-17.5375	0/1:93:54,39:54:1944:39:1377:-96.2285,0,-147.24	0/1:81:42,39:42:1508:39:1396:-101.539,0,-111.631	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:36:14,21:14:504:21:707:-53.0293,0,-34.8022	0/1:64:37,27:37:1332:27:972:-68.5238,0,-100.916	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:32:12,20:12:432:20:720:-55.4949,0,-29.5882	0/1:35:17,18:17:604:18:633:-46.758,0,-44.1546	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:21:9,12:9:324:12:432:-32.6728,0,-23.1842	0/1:218:100,118:100:3569:118:4217:-314.005,0,-255.792	0/1:81:42,39:42:1508:39:1404:-102.245,0,-111.631	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/0:110:108,2:108:3873:2:72:0,-26.2766,-341.926	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/1:221:124,97:124:4441:97:3442:-243.349,0,-333.331	0/1:101:47,54:47:1679:54:1921:-142.726,0,-120.992	0/1:24:14,10:14:504:10:360:-25.491,0,-38.4734	0/0:94:94,0:94:3361:0:0:0,-28.2968,-302.705	0/1:80:27,53:27:968:53:1889:-146.204,0,-63.355	0/1:79:41,38:41:1468:38:1353:-98.2822,0,-108.635	0/1:12:5,7:5:176:7:248:-19.0518,0,-12.5727	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	0/0:159:159,0:159:5707:0:0:0,-47.8638,-513.745	0/1:122:51,71:51:1832:71:2552:-193.136,0,-128.435	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726	0/1:26:11,15:11:392:15:536:-40.7029,0,-27.7933	0/1:147:75,72:75:2673:72:2583:-188.385,0,-196.563	0/1:44:24,20:24:864:20:716:-51.52,0,-64.8372	0/0:48:48,0:48:1719:0:0:0,-14.4494,-154.995	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/1:49:44,5:44:1575:5:180:-1.8016,0,-127.29	0/1:104:58,46:58:2076:46:1656:-118.001,0,-155.803	0/1:114:55,59:55:1972:59:2105:-154.764,0,-143.437	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:174:90,84:90:3221:84:3004:-218.075,0,-237.731	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:62:61,1:61:2187:1:36:0,-15.0656,-193.497	0/1:25:13,12:13:468:12:428:-31.3331,0,-34.9339	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:85:85,0:85:3029:0:0:0,-25.5875,-272.753	0/1:26:5,21:5:180:21:752:-60.1771,0,-8.72528	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:6,4:6:216:4:144:-10.3009,0,-16.7802	0/1:63:27,36:27:972:36:1273:-95.8483,0,-68.833	0/0:104:101,3:101:3616:3:108:0,-21.2319,-315.571	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:219:106,113:106:3812:113:4049:-298.292,0,-277.35	0/1:143:50,93:50:1783:93:3302:-254.336,0,-117.705	0/0:46:45,1:45:1612:1:36:0,-10.2491,-141.772	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:90:90,0:90:3198:0:0:0,-27.0927,-288.041	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.746	0/1:52:28,24:28:1008:24:860:-62.0674,0,-75.3828	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:79:32,47:32:1152:47:1678:-127.305,0,-80.2088	0/0:59:58,1:58:2072:1:36:0,-14.1625,-183.152	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:71:36,35:36:1288:35:1260:-92.3314,0,-94.8505	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:64:32,32:32:1152:32:1136:-83.283,0,-84.7242	0/1:43:25,18:25:892:18:648:-45.7076,0,-67.6554	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.684	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.744	0/1:46:26,20:26:932:20:720:-51.2767,0,-70.3515	0/1:82:43,39:43:1544:39:1389:-100.127,0,-114.569	0/0:24:23,1:23:828:1:36:0,-3.62644,-71.2458	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:48:47,0:47:1688:0:0:0,-14.1484,-151.847	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:48:27,21:27:968:21:756:-53.8831,0,-72.9879	0/1:42:18,24:18:644:24:856:-64.7155,0,-45.6473	0/0:57:57,0:57:2037:0:0:0,-17.1587,-183.6	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645
chr04	28887069	.	T	A	27490.3	PASS	AB=0.508062;ABP=4.79595;AC=47;AF=0.252688;AN=186;AO=1618;CIGAR=1X;DP=5925;DPB=5925;DPRA=1.22837;EPP=3473.16;EPPR=9277.53;GTI=3;LEN=1;MEANALT=1;MQM=59.5136;MQMR=59.9926;NS=93;NUMALT=1;ODDS=0.3607;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57938;QR=154289;RO=4307;RPL=5;RPP=3473.16;RPPR=9277.53;RPR=1613;RUN=1;SAF=0;SAP=3516.45;SAR=1618;SRF=0;SRP=9355.54;SRR=4307;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:22,21:22:788:21:752:-54.9923,0,-58.3005	0/0:81:80,1:80:2852:1:36:0,-20.7852,-253.32	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/0:132:132,0:132:4705:0:0:0,-39.736,-423.61	0/1:60:21,39:21:737:39:1396:-107.821,0,-48.5888	0/1:31:9,22:9:324:22:788:-61.7549,0,-20.1739	0/1:94:54,40:54:1944:40:1436:-101.238,0,-146.939	0/1:80:43,37:43:1548:37:1332:-96.0918,0,-115.531	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/1:36:15,21:15:540:21:752:-57.1554,0,-38.0995	0/1:65:38,27:38:1356:27:968:-67.8622,0,-102.774	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/1:32:12,20:12:432:20:720:-55.4949,0,-29.5882	0/1:33:15,18:15:540:18:648:-48.7146,0,-39.0025	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:21:9,12:9:324:12:432:-32.6728,0,-23.1842	0/1:218:100,118:100:3584:118:4219:-314.208,0,-257.142	0/1:82:43,39:43:1548:39:1392:-100.864,0,-114.929	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:111:108,3:108:3884:3:108:0,-23.3392,-339.678	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:227:126,101:126:4512:101:3611:-256.771,0,-337.914	0/1:99:48,51:48:1709:51:1815:-133.798,0,-124.292	0/1:23:13,10:13:468:10:356:-25.4459,0,-35.536	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/1:78:25,53:25:892:53:1904:-148.157,0,-57.1193	0/1:82:42,40:42:1512:40:1424:-103.762,0,-111.69	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	0/0:160:160,0:160:5740:0:0:0,-48.1648,-516.715	0/1:124:52,72:52:1868:72:2572:-194.297,0,-131.072	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/1:26:11,15:11:396:15:540:-41.0646,0,-28.156	0/1:144:75,69:75:2700:69:2475:-179.617,0,-199.895	0/1:45:25,20:25:900:20:712:-50.857,0,-67.7747	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:50:45,5:45:1612:5:180:-1.50057,0,-130.319	0/1:103:57,46:57:2052:46:1652:-117.945,0,-153.945	0/1:115:55,60:55:1957:60:2152:-158.947,0,-141.785	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/1:176:93,83:93:3328:83:2957:-213.255,0,-246.757	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:62:61,1:61:2196:1:36:0,-15.0656,-194.307	0/1:26:13,13:13:468:13:464:-34.2698,0,-34.6329	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.434	0/1:25:5,20:5:180:20:707:-56.4265,0,-9.02631	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:10:6,4:6:216:4:137:-9.65661,0,-16.7802	0/1:63:27,36:27:964:36:1292:-97.5333,0,-68.1119	0/0:103:100,3:100:3581:3:108:0,-20.9309,-312.42	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:224:108,116:108:3872:116:4168:-307.492,0,-281.244	0/1:148:53,95:53:1900:95:3404:-262.008,0,-126.725	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.565	0/1:52:28,24:28:1008:24:864:-62.4281,0,-75.3828	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/1:77:33,44:33:1176:44:1580:-119.278,0,-82.9685	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.115	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:73:36,37:36:1266:37:1332:-98.1981,0,-92.2634	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:17:11,6:11:392:6:212:-14.3073,0,-30.5012	0/1:64:32,32:32:1129:32:1152:-84.7242,0,-82.6504	0/1:43:25,18:25:884:18:648:-45.7076,0,-66.9341	0/0:109:109,0:109:3897:0:0:0,-32.8123,-350.922	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.744	0/1:47:26,21:26:932:21:747:-53.3988,0,-70.0505	0/1:82:43,39:43:1548:39:1400:-101.117,0,-114.929	0/0:25:24,1:24:864:1:36:0,-3.92747,-74.4843	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.006	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:47:27,20:27:968:20:715:-50.5135,0,-73.289	0/1:42:17,25:17:608:25:891:-67.8632,0,-42.4088	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645
chr04	28891819	.	A	G	23614.1	PASS	AB=0.500353;ABP=3.01336;AC=44;AF=0.234043;AN=188;AO=1435;CIGAR=1X;DP=6074;DPB=6074;DPRA=1.0443;EPP=3119.07;EPPR=10067.8;GTI=0;LEN=1;MEANALT=1.03846;MQM=59.9213;MQMR=59.973;NS=94;NUMALT=1;ODDS=2.02012;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51163;QR=166061;RO=4635;RPL=0;RPP=3119.07;RPPR=10067.8;RPR=1435;RUN=1;SAF=1435;SAP=3119.07;SAR=0;SRF=4635;SRP=10067.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:13,15:13:460:15:540:-40.5077,0,-33.3065	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:125:125,0:125:4457:0:0:0,-37.6287,-401.3	0/1:51:22,28:22:788:28:985:-73.5505,0,-55.8335	0/1:40:19,21:19:684:21:748:-55.6041,0,-49.8487	0/1:70:40,30:40:1432:30:1060:-74.6392,0,-108.105	0/1:64:37,27:37:1328:27:964:-67.8094,0,-100.543	0/0:73:71,2:71:2552:2:72:0,-15.1385,-223.085	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/1:54:20,34:20:712:34:1211:-93.0399,0,-48.151	0/1:67:33,34:33:1188:34:1215:-89.4867,0,-87.0596	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:44:43,1:43:1535:1:36:0,-9.64704,-134.844	0/1:37:19,18:19:672:18:648:-47.5138,0,-49.6687	0/1:68:36,32:36:1288:32:1140:-82.4392,0,-95.7535	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/1:96:39,57:39:1400:57:2018:-152.987,0,-97.4003	0/1:110:60,50:60:2156:50:1785:-127.819,0,-161.194	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/0:76:75,0:75:2692:0:0:0,-22.5772,-242.164	0/0:103:96,7:96:3412:7:252:0,-7.98179,-284.272	0/0:54:54,0:54:1936:0:0:0,-16.2556,-173.739	0/1:202:107,95:107:3828:95:3374:-242.576,0,-283.908	0/1:126:68,58:68:2440:58:2047:-146.568,0,-181.907	0/1:27:16,11:16:572:11:392:-27.4922,0,-43.6856	0/0:146:146,0:146:5214:0:0:0,-43.9504,-469.396	0/1:92:30,62:30:1080:62:2228:-173.088,0,-69.8185	0/1:92:45,47:45:1616:47:1688:-124.512,0,-118.035	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:10:7,3:7:252:3:104:-6.69251,0,-20.0187	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:8,4:8:280:4:144:-9.70126,0,-21.9269	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:161:161,0:161:5768:0:0:0,-48.4658,-519.234	0/1:98:52,46:52:1872:46:1629:-117.396,0,-139.258	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.027	0/1:37:17,20:17:604:20:716:-53.6296,0,-43.5525	0/1:88:48,40:48:1716:40:1424:-101.955,0,-128.235	0/1:36:21,15:21:748:15:540:-38.0995,0,-56.8082	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.135	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.258	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:111:52,59:52:1845:59:2112:-156.848,0,-132.913	0/1:71:38,33:38:1364:33:1184:-85.4952,0,-101.688	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.854	0/1:109:51,58:51:1836:58:2046:-151.596,0,-132.708	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.481	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2677	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/1:40:23,17:23:820:17:612:-43.3722,0,-62.0813	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:64:31,33:31:1116:33:1171:-86.4299,0,-81.4858	0/0:110:109,1:109:3920:1:36:0,-29.515,-349.393	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:105:56,49:56:1989:49:1750:-126.161,0,-147.674	0/1:136:73,63:73:2616:63:2251:-161.912,0,-194.678	0/0:60:57,3:57:2044:3:108:0,-7.98663,-174.157	0/0:57:56,1:56:2008:1:36:0,-13.5604,-177.395	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/0:83:82,1:82:2910:1:36:0,-21.3872,-258.535	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:81:39,42:39:1404:42:1508:-111.629,0,-102.276	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:72:35,37:35:1256:37:1313:-96.7955,0,-91.6711	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:170:170,0:170:6100:0:0:0,-51.1751,-549.099	0/0:100:99,0:99:3537:0:0:0,-29.802,-318.178	0/1:80:34,46:34:1220:46:1646:-124.346,0,-86.0244	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:47:25,22:25:896:22:788:-57.0964,0,-66.8119	0/1:44:23,20:23:820:20:712:-51.1027,0,-60.8185	0/0:130:130,0:130:4676:0:0:0,-39.1339,-420.998	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:42:23,19:23:824:19:680:-48.8859,0,-61.8401	0/1:97:42,55:42:1512:55:1968:-148.195,0,-107.175	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:61:60,1:60:2152:1:36:0,-14.7646,-190.342	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:90:52,38:52:1872:38:1364:-95.968,0,-141.666	0/1:51:12,39:12:432:39:1374:-108.605,0,-23.8687	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553
chr04	28891828	.	AATG	TATG,TATA	130265	PASS	AB=0.490819,0.507415;ABP=5.08363,4.36287;AC=144,44;AF=0.765957,0.234043;AN=188;AO=4535,1453;CIGAR=1X3M,1X2M1X;DP=6005;DPB=6005;DPRA=0,1.07936;EPP=9600.36,3158.16;EPPR=5.18177;GTI=0;LEN=1,4;MEANALT=1.69149,2.14;MQM=59.9768,59.9098;MQMR=60;NS=94;NUMALT=2;ODDS=2.60366;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=162040,51552;QR=36;RO=1;RPL=29,0;RPP=9600.36,3158.16;RPPR=5.18177;RPR=4506,1453;RUN=1,1;SAF=4535,1453;SAP=9850.64,3158.16;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:28:0,13,15:0:0:13,15:464,528:-81.1654,-43.3358,-39.4224,-38.1841,0,-33.6687	1/1:79:0,79,0:0:0:79,0:2818,0:-253.857,-23.7814,0,-253.857,-23.7814,-253.857	1/1:66:0,66,0:0:0:66,0:2372,0:-213.738,-19.868,0,-213.738,-19.868,-213.738	1/1:118:0,116,0:0:0:116,0:4133,0:-371.853,-34.9195,0,-371.853,-34.9195,-371.853	1/2:51:0,21,30:0:0:21,30:752,1070:-148.909,-87.5812,-81.2596,-61.6846,0,-52.6537	1/2:40:0,19,21:0:0:19,21:669,744:-115.424,-60.9627,-55.2431,-54.8144,0,-48.4927	1/2:72:0,40,32:0:0:40,32:1440,1113:-208.346,-90.8426,-78.8014,-117.857,0,-108.224	1/2:64:0,36,27:0:0:36,27:1288,954:-182.847,-77.8127,-66.9757,-105.153,0,-97.0253	1/1:73:0,70,3:0:0:70,3:2509,105:-225.704,-21.0721,0,-217.161,-12.1791,-216.258	1/1:72:0,72,0:0:0:72,0:2577,0:-232.177,-21.6742,0,-232.177,-21.6742,-232.177	1/2:55:0,20,35:0:0:20,35:716,1256:-161.198,-102.81,-96.7889,-58.7471,0,-48.2111	1/2:69:0,34,35:0:0:34,35:1224,1254:-202.502,-102.629,-92.3942,-100.232,0,-89.696	1/1:58:0,58,0:0:0:58,0:2084,0:-187.83,-17.4597,0,-187.83,-17.4597,-187.83	1/1:76:0,76,0:0:0:76,0:2736,0:-246.482,-22.8783,0,-246.482,-22.8783,-246.482	1/1:45:1,44,0:1:36:44,0:1572,0:-138.173,-9.94808,0,-138.474,-13.2453,-141.412	1/2:37:0,19,18:0:0:19,18:680,642:-108.144,-52.6912,-46.9716,-55.8096,0,-50.3911	1/2:66:0,35,31:0:0:35,31:1252,1098:-191.891,-89.7979,-79.2619,-102.449,0,-93.1171	1/1:47:0,47,0:0:0:47,0:1679,0:-151.396,-14.1484,0,-151.396,-14.1484,-151.396	1/2:24:0,12,12:0:0:12,12:432,430:-70.6777,-35.4278,-31.8155,-35.6088,0,-31.9965	1/2:99:0,42,57:0:0:42,57:1493,2040:-288.37,-166.707,-154.064,-122.019,0,-104.861	1/2:108:0,58,49:0:0:58,49:2072,1719:-308.95,-140.011,-122.552,-169.059,0,-154.308	1/1:81:0,81,0:0:0:81,0:2892,0:-260.517,-24.3834,0,-260.517,-24.3834,-260.517	1/1:73:0,73,0:0:0:73,0:2616,0:-235.688,-21.9752,0,-235.688,-21.9752,-235.688	1/1:99:0,92,7:0:0:92,7:3298,245:-296.688,-27.6948,0,-276.757,-7.41269,-274.65	1/1:51:0,51,0:0:0:51,0:1827,0:-164.481,-15.3525,0,-164.481,-15.3525,-164.481	1/2:199:0,103,95:0:0:103,95:3654,3387:-573.38,-275.679,-244.672,-297.776,0,-269.178	1/2:124:0,67,57:0:0:67,57:2381,2043:-360.987,-166.984,-146.815,-194.36,0,-177.201	1/2:26:0,15,11:0:0:15,11:540,394:-76.5526,-32.4902,-27.9748,-44.4211,0,-41.1098	1/1:147:0,147,0:0:0:147,0:5229,0:-470.747,-44.2514,0,-470.747,-44.2514,-470.747	1/2:93:0,30,62:0:0:30,62:1060,2207:-266.196,-179.87,-170.839,-86.3208,0,-67.6569	1/2:92:0,44,48:0:0:44,48:1584,1698:-267.905,-138.656,-125.411,-129.606,0,-115.157	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:11:0,7,4:0:0:7,4:248,143:-32.2181,-12.0173,-9.91011,-20.557,0,-19.3529	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:12:0,8,4:0:0:8,4:288,140:-35.2464,-11.7405,-9.33222,-23.8592,0,-22.655	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:161:0,160,0:0:0:160,0:5728,0:-515.276,-48.1648,0,-515.276,-48.1648,-515.276	1/2:98:0,52,46:0:0:52,46:1856,1623:-283.822,-132.511,-116.857,-151.666,0,-137.819	1/1:36:0,36,0:0:0:36,0:1292,0:-116.583,-10.8371,0,-116.583,-10.8371,-116.583	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:67:0,67,0:0:0:67,0:2393,0:-215.625,-20.169,0,-215.625,-20.169,-215.625	1/2:37:0,17,20:0:0:17,20:612,717:-108.774,-58.8376,-53.7201,-50.2959,0,-44.2753	1/2:89:0,46,43:0:0:46,43:1644,1487:-255.218,-121.168,-107.321,-134.401,0,-121.457	1/2:36:0,21,15:0:0:21,15:728,540:-103.583,-44.4211,-38.0995,-59.5161,0,-55.0006	1/1:46:0,45,0:0:0:45,0:1620,0:-145.838,-13.5464,0,-145.838,-13.5464,-145.838	1/1:100:0,99,0:0:0:99,0:3531,0:-317.787,-29.802,0,-317.787,-29.802,-317.787	1/1:52:0,52,0:0:0:52,0:1848,0:-166.598,-15.6536,0,-166.598,-15.6536,-166.598	1/2:112:0,52,60:0:0:52,60:1855,2130:-325.039,-173.82,-158.166,-151.575,0,-133.513	1/2:71:0,38,33:0:0:38,33:1368,1170:-207.298,-95.6729,-84.2338,-111.982,0,-102.048	1/1:68:0,68,0:0:0:68,0:2419,0:-217.965,-20.47,0,-217.965,-20.47,-217.965	1/2:110:0,51,59:0:0:51,59:1806,2094:-318.08,-170.969,-155.616,-147.465,0,-129.704	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:77:0,77,0:0:0:77,0:2768,0:-249.36,-23.1793,0,-249.36,-23.1793,-249.36	1/2:29:0,15,14:0:0:15,14:536,493:-84.1915,-40.4873,-35.9718,-44.0587,0,-39.8443	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:67:0,67,0:0:0:67,0:2404,0:-216.616,-20.169,0,-216.616,-20.169,-216.616	1/2:39:0,22,17:0:0:22,17:792,608:-114.559,-49.9345,-43.3119,-64.983,0,-59.8655	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chr04	28906912	.	T	C	25262.5	PASS	AB=0.503157;ABP=3.27082;AC=45;AF=0.239362;AN=188;AO=1526;CIGAR=1X;DP=6183;DPB=6183;DPRA=1.08033;EPP=3299.33;EPPR=10070;GTI=0;LEN=1;MEANALT=1.01852;MQM=59.5537;MQMR=59.939;NS=94;NUMALT=1;ODDS=3.05848;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54253;QR=166664;RO=4656;RPL=1524;RPP=3299.33;RPPR=10070;RPR=2;RUN=1;SAF=1526;SAP=3316.68;SAR=0;SRF=4656;SRP=10113.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:5,11:5:180:11:387:-30.1199,0,-11.7356	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.787	0/0:72:71,1:71:2527:1:36:0,-18.0759,-224.083	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.385	0/1:31:14,17:14:504:17:604:-45.3302,0,-36.3662	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:70:37,33:37:1332:33:1184:-85.7678,0,-99.0819	0/1:101:61,40:61:2188:40:1408:-96.59,0,-166.782	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/1:38:17,21:17:612:21:747:-56.0701,0,-43.9743	0/1:68:38,30:38:1364:30:1058:-75.0311,0,-102.591	0/0:56:56,0:56:1981:0:0:0,-16.8577,-178.563	0/0:83:83,0:83:2908:0:0:0,-24.9855,-261.952	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.69	0/1:51:24,27:24:845:27:972:-72.4423,0,-61.0146	0/1:54:30,24:30:1061:24:852:-60.738,0,-79.5153	0/0:42:41,1:41:1472:1:36:0,-9.04498,-129.178	0/1:29:16,13:16:576:13:468:-33.7282,0,-43.4451	0/1:108:51,57:51:1836:57:2040:-151.349,0,-133.009	0/1:89:27,61:27:972:61:2167:-168.413,0,-60.9474	0/0:50:49,1:49:1745:1:36:0,-11.4532,-153.734	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.77	0/0:49:46,3:46:1656:3:108:0,-4.6753,-139.24	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:291:150,141:150:5374:141:4995:-362.025,0,-396.032	0/1:203:91,112:91:3260:112:3993:-298.45,0,-232.511	0/1:32:11,21:11:396:21:738:-57.1084,0,-26.3498	0/0:138:138,0:138:4947:0:0:0,-41.5421,-445.378	0/1:91:57,34:57:2044:34:1211:-81.8734,0,-156.838	0/1:81:36,45:36:1292:45:1595:-119.266,0,-92.2003	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:157:157,0:157:5617:0:0:0,-47.2617,-505.521	0/1:128:62,66:62:2232:66:2356:-173.695,0,-162.612	0/0:57:57,0:57:2043:0:0:0,-17.1587,-184.141	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/1:27:16,11:16:576:11:392:-27.4922,0,-44.0468	0/1:69:35,34:35:1260:34:1216:-88.9355,0,-92.9344	0/1:75:43,32:43:1531:32:1111:-77.6294,0,-115.505	0/0:59:59,0:59:2106:0:0:0,-17.7608,-189.78	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.719	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:108:48,60:48:1728:60:2144:-160.559,0,-123.294	0/1:82:41,41:41:1472:41:1455:-106.531,0,-108.092	0/0:136:136,0:136:4876:0:0:0,-40.9401,-438.978	0/1:83:49,34:49:1743:34:1194:-82.7783,0,-132.168	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.364	0/1:27:9,18:9:324:18:648:-50.4956,0,-21.378	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:83:83,0:83:2971:0:0:0,-24.9855,-266.845	0/1:26:13,13:13:468:13:464:-34.2707,0,-34.6329	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:39:12,27:12:428:27:960:-74.9761,0,-27.1186	0/0:121:119,2:119:4267:2:72:0,-29.5879,-377.364	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:151:78,73:78:2787:73:2599:-188.646,0,-205.615	0/1:83:43,40:43:1544:40:1414:-102.569,0,-114.268	0/0:66:65,1:65:2319:1:36:0,-16.2697,-205.372	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.976	0/0:124:123,1:123:4411:1:36:0,-33.7294,-393.562	0/0:63:62,1:62:2232:1:36:0,-15.3666,-197.517	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.169	0/1:69:37,32:37:1332:32:1140:-82.0782,0,-99.4113	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:42:16,26:16:568:26:924:-70.8298,0,-38.8086	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.332	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.078	0/1:64:49,15:49:1752:15:536:-29.2518,0,-138.698	0/0:103:103,0:103:3678:0:0:0,-31.0061,-331.223	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:88:48,40:48:1716:40:1440:-103.35,0,-128.235	0/1:66:30,36:30:1080:36:1261:-93.9216,0,-77.6453	0/0:106:106,0:106:3807:0:0:0,-31.9092,-342.82	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.584	0/0:72:71,1:71:2552:1:36:0,-18.0759,-226.332	0/1:73:36,37:36:1281:37:1306:-95.8638,0,-93.6161	0/1:128:57,71:57:2030:71:2530:-189.311,0,-144.411	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:62:62,0:62:2196:0:0:0,-18.6639,-197.903	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.684	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/1:104:57,47:57:2044:47:1660:-118.332,0,-152.924	0/1:49:15,34:15:540:34:1216:-94.924,0,-34.1861	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.149
chr04	28979330	.	A	G	15550.9	PASS	AB=0.41186;ABP=170.289;AC=43;AF=0.231183;AN=186;AO=1034;CIGAR=1X;DP=5258;DPB=5258;DPRA=1.1555;EPP=2248.31;EPPR=9175.31;GTI=2;LEN=1;MEANALT=1;MQM=58.7959;MQMR=59.9512;NS=93;NUMALT=1;ODDS=1.11385;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36967;QR=146084;RO=4224;RPL=0;RPP=2248.31;RPPR=9175.31;RPR=1034;RUN=1;SAF=1034;SAP=2248.31;SAR=0;SRF=4224;SRP=9175.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:146:144,2:144:4941:2:72:0,-37.1137,-438	0/0:45:45,0:45:1581:0:0:0,-13.5463,-142.578	0/0:69:69,0:69:2419:0:0:0,-20.7711,-217.962	0/1:25:13,12:13:449:12:428:-31.0588,0,-33.2117	0/1:43:14,29:14:489:29:1040:-80.9701,0,-31.3946	0/1:52:32,20:32:1125:20:701:-47.4317,0,-85.9025	0/1:74:32,42:32:1121:42:1504:-113.281,0,-78.9195	0/0:46:46,0:46:1621:0:0:0,-13.8474,-146.177	0/0:58:58,0:58:2035:0:0:0,-17.4597,-183.389	0/1:85:52,33:52:1788:33:1180:-80.8637,0,-135.606	0/1:62:35,27:35:1222:27:968:-68.7735,0,-91.6157	0/0:48:48,0:48:1697:0:0:0,-14.4494,-153.013	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.031	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:42:22,20:22:784:20:720:-52.4389,0,-58.2407	0/1:84:34,50:34:1174:50:1796:-136.51,0,-80.6735	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/1:34:23,11:23:790:11:392:-25.349,0,-61.1775	0/1:80:57,23:57:1995:23:824:-50.2587,0,-155.736	0/1:46:24,22:24:845:22:792:-57.6995,0,-62.5191	0/0:46:45,1:45:1548:1:36:0,-10.2491,-135.996	0/0:50:49,1:49:1646:1:36:0,-11.4532,-144.814	0/0:52:52,0:52:1807:0:0:0,-15.6536,-162.906	0/0:28:28,0:28:970:0:0:0,-8.42884,-87.6077	0/1:135:71,64:71:2371:64:2296:-166.185,0,-172.996	0/1:88:42,46:42:1440:46:1637:-120.492,0,-103.396	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:174:174,0:174:6110:0:0:0,-52.3792,-549.845	0/1:180:149,31:149:5185:31:1104:-45.3009,0,-412.605	0/1:54:35,19:35:1233:19:672:-44.5227,0,-95.0103	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:4,2:4:125:2:72:-5.03054,0,-9.75244	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:5:4,1:4:144:1:36:-2.07362,0,-11.8085	0/0:6:6,0:6:182:0:0:0,-1.80618,-16.6779	0/0:137:137,0:137:4796:0:0:0,-41.2411,-431.687	0/1:87:45,42:45:1503:42:1508:-109.622,0,-109.329	0/0:94:94,0:94:2834:0:0:0,-28.2968,-255.276	.:.:.:.:.:.:.:.	0/0:94:93,1:93:3202:1:36:0,-24.6985,-284.804	0/1:10:5,5:5:180:5:180:-13.5189,0,-13.5418	0/1:53:27,26:27:927:26:928:-66.5595,0,-67.7812	0/1:63:38,25:38:1270:25:900:-62.2704,0,-95.6211	0/0:41:41,0:41:1363:0:0:0,-12.3422,-122.951	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/0:35:35,0:35:1203:0:0:0,-10.536,-108.567	0/1:120:82,38:82:2819:38:1345:-85.0636,0,-217.82	0/1:36:20,16:20:652:16:576:-41.2809,0,-48.1456	0/0:68:67,1:67:2351:1:36:0,-16.8718,-208.247	0/1:45:28,17:28:1004:17:608:-41.4799,0,-77.1295	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:55:55,0:55:1900:0:0:0,-16.5566,-171.271	0/1:30:18,12:18:633:12:432:-30.1371,0,-48.2642	0/0:20:20,0:20:682:0:0:0,-6.0206,-61.6947	0/0:44:44,0:44:1493:0:0:0,-13.2453,-134.651	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/1:5:2,3:2:72:3:100:-7.44202,0,-5.33157	0/1:61:35,26:35:1241:26:932:-65.7911,0,-93.6297	0/0:87:87,0:87:3064:0:0:0,-26.1896,-275.985	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:126:85,41:85:2894:41:1472:-94.7781,0,-222.741	0/1:72:41,31:41:1408:31:1112:-78.6599,0,-105.333	0/0:79:75,4:75:2572:4:129:0,-11.8537,-219.793	0/0:26:26,0:26:902:0:0:0,-7.82678,-81.4903	0/0:81:80,1:80:2654:1:36:0,-20.7852,-235.494	0/0:36:36,0:36:1209:0:0:0,-10.8371,-109.1	0/0:22:22,0:22:701:0:0:0,-6.62266,-63.3856	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2025	0/1:57:29,28:29:1021:28:1008:-73.86,0,-75.0415	0/1:13:11,2:11:377:2:68:-2.53981,0,-30.3445	0/1:48:29,19:29:1032:19:680:-47.0797,0,-78.744	0/0:38:38,0:38:1314:0:0:0,-11.4391,-118.555	0/0:97:97,0:97:3423:0:0:0,-29.1999,-308.282	0/0:117:117,0:117:4105:0:0:0,-35.2205,-369.589	0/1:62:38,24:38:1307:24:849:-58.0281,0,-99.2592	0/0:103:103,0:103:3513:0:0:0,-31.0061,-316.379	0/1:5:1,4:1:32:4:144:-11.7718,0,-1.69416	0/1:67:46,21:46:1595:21:733:-45.9626,0,-123.664	0/1:49:23,26:23:786:26:936:-69.7373,0,-56.3008	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.921	0/0:71:71,0:71:2465:0:0:0,-21.3731,-222.09	0/0:59:59,0:59:2064:0:0:0,-17.7608,-186.024	0/1:57:21,36:21:748:36:1292:-99.4246,0,-50.4866	0/1:98:56,42:56:1974:42:1512:-106.845,0,-148.43	0/0:27:25,2:25:876:2:72:0,-1.29109,-72.3203	0/0:63:63,0:63:2199:0:0:0,-18.9649,-198.171	0/0:59:59,0:59:2082:0:0:0,-17.7608,-187.647	0/0:40:40,0:40:1322:0:0:0,-12.0412,-119.264	0/1:124:88,36:88:3028:36:1273:-77.4533,0,-235.4	0/1:55:28,27:28:959:27:972:-69.8846,0,-70.0577	0/0:47:47,0:47:1619:0:0:0,-14.1484,-145.992	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.943
chr04	28980127	.	C	T	40732.3	PASS	AB=0.429896;ABP=256.321;AC=45;AF=0.239362;AN=188;AO=2568;CIGAR=1X;DP=9972;DPB=9972;DPRA=1.81039;EPP=5579.35;EPPR=16069.7;GTI=1;LEN=1;MEANALT=1.05172;MQM=59.9564;MQMR=60;NS=94;NUMALT=1;ODDS=0.853958;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91972;QR=264833;RO=7399;RPL=0;RPP=5579.35;RPPR=16069.7;RPR=2568;RUN=1;SAF=2568;SAP=5579.35;SAR=0;SRF=7399;SRP=16069.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:87:50,37:50:1788:37:1324:-93.2723,0,-135.013	0/0:90:89,1:89:3176:1:36:0,-23.4944,-282.467	0/0:175:175,0:175:6268:0:0:0,-52.6802,-564.214	0/0:181:180,1:180:6460:1:36:0,-50.8882,-577.886	0/1:42:27,15:27:972:15:540:-36.2933,0,-75.1546	0/1:44:32,12:32:1144:12:432:-25.9759,0,-90.0242	0/1:178:101,77:101:3620:77:2764:-195.418,0,-272.422	0/1:171:105,66:105:3756:66:2356:-160.823,0,-286.764	0/0:101:99,2:99:3544:2:72:0,-23.5673,-312.332	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:65:46,19:46:1648:19:684:-42.3234,0,-129.042	0/1:103:70,33:70:2507:33:1179:-75.4111,0,-194.875	0/0:49:49,0:49:1738:0:0:0,-14.7505,-156.703	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:73:43,30:43:1544:30:1059:-73.6452,0,-117.278	0/1:37:21,16:21:743:16:576:-41.0369,0,-56.0552	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:25:22,3:22:784:3:108:-2.54942,0,-63.3582	0/1:381:255,126:255:9112:126:4515:-291.825,0,-705.365	0/1:261:150,111:150:5372:111:3976:-279.462,0,-405.043	0/0:85:84,1:84:3020:1:36:0,-21.9893,-268.432	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453	0/0:84:83,1:83:2972:1:36:0,-21.6882,-264.115	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:354:184,170:184:6576:170:6066:-439.473,0,-485.358	0/1:358:194,164:194:6964:164:5854:-418.96,0,-519.054	0/1:31:21,10:21:748:10:352:-22.6863,0,-58.3134	0/0:254:251,3:251:8988:3:108:0,-66.3864,-798.824	0/1:192:110,82:110:3952:82:2944:-207.29,0,-298.072	0/1:157:84,73:84:3012:73:2616:-188.422,0,-224.049	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5241	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:163:163,0:163:5831:0:0:0,-49.0679,-524.902	0/1:235:112,122:112:4004:122:4380:-323.718,0,-289.898	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:169:167,1:167:5964:1:36:0,-47.2597,-533.345	0/1:33:26,7:26:936:7:248:-12.7302,0,-74.6255	0/1:213:115,98:115:4108:98:3497:-250.82,0,-305.787	0/1:48:29,19:29:1044:19:684:-47.4409,0,-79.8254	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.894	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:74:73,1:73:2616:1:36:0,-18.6779,-232.089	0/1:247:119,128:119:4276:128:4600:-339.808,0,-310.662	0/1:206:97,109:97:3476:109:3912:-290.259,0,-251.039	0/0:141:141,0:141:5044:0:0:0,-42.4452,-454.106	0/1:212:127,85:127:4552:85:3031:-209.158,0,-346.027	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:121:121,0:121:4317:0:0:0,-36.4246,-388.706	0/1:84:42,42:42:1500:42:1508:-110.728,0,-110.008	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:144:144,0:144:5136:0:0:0,-43.3483,-462.384	0/1:76:46,30:46:1620:30:1076:-74.2746,0,-123.211	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:20:8,12:8:284:12:428:-32.8382,0,-19.8828	0/1:130:80,50:80:2845:50:1800:-123.148,0,-217.154	0/0:79:78,1:78:2782:1:36:0,-20.1831,-247.022	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:379:207,172:207:7408:172:6161:-440.496,0,-552.676	0/1:243:142,101:142:5084:101:3620:-252.854,0,-384.554	0/0:69:66,2:66:2352:2:72:0,-13.9931,-205.103	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:148:148,0:148:5292:0:0:0,-44.5524,-476.416	0/0:159:158,1:158:5668:1:36:0,-44.2655,-506.64	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/1:52:30,22:30:1076:22:792:-55.9521,0,-81.4993	0/1:26:16,10:16:572:10:356:-24.5545,0,-43.9866	0/1:275:160,115:160:5744:115:4118:-288.018,0,-434.291	0/0:86:85,0:85:3044:0:0:0,-25.5875,-273.83	0/0:118:118,0:118:4196:0:0:0,-35.5215,-377.824	0/0:172:172,0:172:6164:0:0:0,-51.7772,-554.858	0/1:72:35,37:35:1256:37:1332:-98.5067,0,-91.6711	0/0:92:91,1:91:3264:1:36:0,-24.0965,-290.382	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:161:67,94:67:2408:94:3361:-254.237,0,-168.51	0/1:193:112,81:112:4024:81:2908:-203.856,0,-304.248	0/0:192:192,0:192:6872:0:0:0,-57.7978,-618.549	0/0:55:54,1:54:1940:1:32:0,-13.3573,-171.677	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/1:41:30,11:30:1080:11:396:-23.6405,0,-85.171	0/1:137:87,50:87:3119:50:1791:-120.231,0,-239.694	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:38:37,0:37:1328:0:0:0,-11.1381,-119.462	0/1:114:80,34:80:2864:34:1220:-75.7894,0,-223.68	0/1:95:54,41:54:1923:41:1472:-104.178,0,-144.748	0/0:137:137,0:137:4904:0:0:0,-41.2411,-441.512	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026
chr04	28980314	.	T	C	353943	PASS	AB=0.289116;ABP=46181.4;AC=91;AF=0.484043;AN=188;AO=34619;CIGAR=1X;DP=120436;DPB=120436;DPRA=0;EPP=75125.1;EPPR=186298;GTI=23;LEN=1;MEANALT=1.2234;MQM=37.9926;MQMR=44.9769;NS=94;NUMALT=1;ODDS=5.01339;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1239585;QR=3061973;RO=85792;RPL=0;RPP=75177.2;RPPR=186298;RPR=34619;RUN=1;SAF=34613;SAP=75125.1;SAR=6;SRF=85792;SRP=186298;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:699:476,223:476:16913:223:8004:-465.454,0,-1240.71	0/1:519:377,142:377:13419:142:5061:-273.874,0,-1006.1	0/1:1373:1002,369:1002:35743:369:13222:-706.843,0,-2657.06	0/1:3313:2357,954:2357:84200:954:34169:-1853.37,0,-6404.19	0/1:1961:1426,534:1426:50931:534:19117:-1004.95,0,-3804.33	0/1:872:629,243:629:22437:243:8700:-475.632,0,-1649.1	0/1:1329:912,415:912:32613:415:14881:-843.654,0,-2429.23	0/1:1670:1334,335:1334:47599:335:11979:-513.367,0,-3558.47	0/1:1927:1184,742:1184:42257:742:26566:-1673.5,0,-3029.2	0/1:694:479,215:479:17112:215:7724:-437.435,0,-1301.26	0/1:466:381,85:381:13627:85:3045:-114.036,0,-1049.79	0/1:1535:1143,391:1143:40854:391:13993:-723.722,0,-3019.81	0/1:1098:806,292:806:28855:292:10484:-556.315,0,-2125.74	0/1:522:426,96:426:15217:96:3440:-132.184,0,-1162.4	0/1:600:461,139:461:16510:139:4980:-235.285,0,-1269.83	0/1:835:609,226:609:21661:226:8112:-427.368,0,-1617.15	0/1:452:344,108:344:12234:108:3880:-191.807,0,-911.327	0/1:459:328,130:328:11726:130:4664:-256.713,0,-865.381	0/1:256:212,44:212:7600:44:1580:-56.0579,0,-571.921	0/1:2761:1999,762:1999:71483:762:27317:-1449.43,0,-5385.6	0/1:3834:2558,1276:2558:91239:1276:45645:-2659.44,0,-6744.36	0/1:872:634,238:634:22624:238:8537:-483.715,0,-1744.62	0/1:1024:696,327:696:24816:327:11717:-671.724,0,-1851.44	0/1:842:481,361:481:17093:361:12906:-825.11,0,-1211.09	0/1:1776:1178,597:1178:42096:597:21362:-1253.85,0,-3107.41	0/1:2494:1727,766:1727:61644:766:27456:-1648.66,0,-4648.64	0/1:2490:1763,726:1763:63073:726:26021:-1426.26,0,-4710.09	0/1:322:249,72:249:8907:72:2580:-119.026,0,-669.215	0/1:2616:1841,775:1841:65745:775:27788:-1641.06,0,-5037.87	0/1:1073:883,190:883:31403:190:6804:-247.291,0,-2372.82	0/1:827:612,215:612:21800:215:7704:-393.498,0,-1648.21	0/1:222:193,29:193:6887:29:1025:-18.6109,0,-524.607	0/1:402:325,77:325:11604:77:2772:-110.51,0,-881.715	0/0:429:406,23:406:14554:23:809:0,-59.9729,-1156.95	0/0:350:322,28:322:11395:28:1004:0,-19.6973,-869.548	0/1:721:579,142:579:20685:142:5072:-214.525,0,-1529.48	0/1:2746:1966,780:1966:70222:780:27866:-1603.26,0,-5369.92	0/1:1349:904,445:904:32212:445:15948:-925.149,0,-2395.65	0/1:440:352,88:352:12632:88:3148:-134.544,0,-948.93	0/0:110:105,5:105:3746:5:180:0,-17.6829,-307.454	0/1:1015:840,175:840:29839:175:6260:-216.247,0,-2266.84	0/1:288:221,67:221:7937:67:2396:-114.482,0,-599.074	0/1:3671:2608,1063:2608:92646:1063:38075:-2077.25,0,-6955.58	0/1:683:535,148:535:19163:148:5316:-240.136,0,-1467.09	0/1:866:596,269:596:21265:269:9644:-542.285,0,-1597.29	0/1:3655:2466,1189:2466:87642:1189:42447:-2611.05,0,-6637.86	0/1:1598:1207,390:1207:42814:390:13946:-701.764,0,-3184.53	0/1:3558:2686,872:2686:95877:872:31234:-1538.41,0,-7283.17	0/1:1093:742,351:742:26565:351:12580:-722.991,0,-1993.23	0/1:1222:958,264:958:34312:264:9465:-423.133,0,-2663.59	0/1:1494:965,528:965:34530:528:18895:-1201.9,0,-2589.85	0/1:284:252,32:252:8961:32:1152:-9.88973,0,-697.444	0/1:2232:1575,656:1575:56334:656:23497:-1317.94,0,-4122.38	0/1:884:704,180:704:25105:180:6448:-297.383,0,-1928.59	0/1:217:190,27:190:6781:27:972:-17.3339,0,-509.623	0/1:3009:2000,1009:2000:71218:1009:36090:-2110.64,0,-5243.1	0/1:639:427,211:427:15183:211:7549:-437.442,0,-1130.2	0/1:335:268,67:268:9532:67:2388:-107.824,0,-736.084	0/1:314:238,76:238:8513:76:2713:-143.184,0,-655.148	0/1:1127:837,290:837:29779:290:10400:-530.237,0,-2237.2	0/1:1250:882,368:882:31582:368:13165:-719.901,0,-2383.03	0/1:176:150,26:150:5377:26:921:-24.3739,0,-414.511	0/1:2089:1593,496:1593:56957:496:17753:-923.737,0,-4372.65	0/1:2906:2004,900:2004:71642:900:32190:-1805.28,0,-5367.7	0/1:618:449,169:449:16003:169:6053:-320.858,0,-1193.74	0/1:1067:751,315:751:26787:315:11263:-617.591,0,-2036.82	0/1:3522:2236,1286:2236:79817:1286:46065:-2781.08,0,-5926.98	0/1:1044:690,354:690:24639:354:12692:-743.34,0,-1866.31	0/1:550:431,119:431:15414:119:4272:-191.331,0,-1162.39	0/1:932:522,410:522:18603:410:14682:-963.616,0,-1319.18	0/1:661:463,198:463:16521:198:7085:-419.286,0,-1259.95	0/1:188:157,31:157:5621:31:1112:-36.4006,0,-433.451	0/1:2644:1941,703:1941:69232:703:25133:-1336.18,0,-5068.13	0/1:842:507,335:507:18067:335:12024:-765.177,0,-1302.03	0/1:2189:1455,734:1455:51860:734:26269:-1535.75,0,-3827.22	0/1:1578:1108,470:1108:39784:470:16868:-935.054,0,-3024.71	0/1:1418:1123,295:1123:39933:295:10560:-468.92,0,-2985.89	0/1:1673:1172,501:1172:41849:501:17957:-1016.99,0,-3062.06	0/1:442:365,77:365:12983:77:2756:-101.204,0,-962.099	0/1:2035:1355,680:1355:48484:680:24345:-1419.72,0,-3592.94	0/1:1903:1403,500:1403:49980:500:17908:-947.004,0,-3682.86	0/1:3412:2199,1213:2199:78650:1213:433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chr04	28980330	.	CTGAT	ATGAC,CTGAC	1.36614e+06	PASS	AB=0.510228,0.307843;ABP=113.743,39091.4;AC=95,72;AF=0.505319,0.382979;AN=188;AO=62578,37543;CIGAR=1X3M1X,4M1X;DP=122315;DPB=122314;DPRA=0,0;EPP=134849,79146.9;EPPR=46580.8;GTI=17;LEN=5,1;MEANALT=5.74468,5.74468;MQM=40.1933,39.645;MQMR=56.8783;NS=94;NUMALT=2;ODDS=4.23956;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=2201032,1343443;QR=768641;RO=21721;RPL=120,270;RPP=134849,79198.3;RPPR=46580.8;RPR=62458,37273;RUN=1,1;SAF=62578,37537;SAP=135889,81474.5;SAR=0,6;SRF=21721;SRP=47169.6;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:716:147,290,277:147:5203:290,277:10070,9934:-1066.91,-349.639,-678.261,-345.586,0,-678.127	0/1:526:165,217,143:165:5834:217,143:7632,5105:-527.809,0,-409.841,-187.196,-84.893,-619.315	1/2:1396:334,685,374:334:11783:685,374:24055,13374:-1782.99,-61.2772,-814.527,-862.788,0,-1709.66	1/2:3375:671,1733,958:671:23684:1733,958:60743,34250:-5227.52,-643.014,-2049.51,-2858.3,0,-4498.1	1/2:1983:130,1235,603:130:4600:1235,603:43387,21630:-4590.1,-1263.66,-1266.22,-2991.23,0,-3184.04	1/2:886:78,527,277:78:2747:527,277:18525,9931:-1928.88,-543.651,-606.711,-1187,0,-1325.32	1/2:1346:148,731,464:148:5260:731,464:25703,16600:-2816.57,-847.355,-1038.32,-1602.75,0,-1874.09	1/2:1696:371,880,439:371:13119:880,439:30861,15706:-2415.73,-183.108,-952.404,-1310.1,0,-2212.15	1/2:1950:320,870,742:320:11305:870,742:30661,26564:-3338.61,-1109.5,-1768.27,-1404.77,0,-2102.07	1/2:706:182,305,217:182:6431:305,217:10767,7744:-852.054,-58.8295,-490.77,-324.25,0,-782.676	0/1:472:112,258,102:112:3977:258,102:9146,3659:-683.73,0,-239.695,-439.581,-39.4998,-726.232	1/2:1562:180,928,449:180:6406:928,449:32696,16081:-3142.24,-715.342,-958.078,-1958.98,0,-2345.91	1/2:1113:165,651,294:165:5871:651,294:23141,10547:-2024.61,-325.259,-607.769,-1270.53,0,-1660.5	0/1:531:112,324,95:112:3987:324,95:11447,3404:-849.689,0,-227.429,-626.222,-67.7893,-922.58	0/1:604:158,305,138:158:5595:305,138:10790,4956:-801.296,0,-363.922,-477.057,-83.9414,-891.244	1/2:854:107,475,268:107:3813:475,268:16734,9575:-1690.61,-428.383,-586.176,-993.653,0,-1213.76	1/2:464:62,275,125:62:2213:275,125:9698,4496:-882.029,-164.787,-262.423,-555.473,0,-698.263	1/2:467:84,253,130:84:2973:253,130:8959,4656:-766.871,-113.23,-279.166,-436.819,0,-639.781	0/1:262:63,140,58:63:2235:140,58:4962,2073:-357.842,0,-135.123,-217.014,-17.479,-376.821	1/2:2798:425,1484,878:425:15073:1484,878:52248,31447:-5184.34,-1208.27,-1942.62,-2922.93,0,-3839.7	1/2:3906:652,1789,1450:652:22988:1789,1450:62792,51856:-6786.7,-2112.64,-3396.06,-3048.36,0,-4433.84	0/1:888:279,366,239:279:9862:366,239:12870,8584:-936.111,0,-693.014,-342.212,-125.309,-1073.46	0/1:1050:376,341,332:376:13268:341,332:11910,11847:-820.946,0,-944.467,-42.6447,-155.632,-989.817	1/2:851:145,339,365:145:5115:339,365:11940,13078:-1451.86,-579.083,-881.082,-512.368,0,-806.54	1/2:1803:268,921,601:268:9458:921,601:32338,21536:-3270.18,-851.733,-1344.66,-1728.94,0,-2318.19	1/2:2534:570,1034,918:570:20186:1034,918:36418,32831:-3749.32,-1028.66,-2295.1,-1314.55,0,-2615.91	1/2:2522:636,963,908:636:22552:963,908:33905,32485:-3154.07,-715.969,-2194.96,-860.674,0,-2356.22	1/2:323:75,161,87:75:2664:161,87:5714,3115:-447.123,-28.7498,-189.209,-232.023,0,-414.757	1/2:2651:738,1127,776:738:26130:1127,776:39646,27765:-2993.27,-65.1506,-1854.34,-1021.82,0,-2916.68	1/2:1094:168,686,233:168:5942:686,233:24070,8334:-1979.48,-172.35,-431.773,-1391.77,0,-1787.56	1/2:838:137,440,260:137:4843:440,260:15438,9285:-1494.71,-326.349,-574.075,-829.423,0,-1131.33	0/1:224:47,144,32:47:1675:144,32:5070,1144:-377.494,0,-87.419,-305.52,-44.648,-426.65	1/2:407:84,218,105:84:2985:218,105:7696,3764:-625.663,-54.4103,-223.246,-362.076,0,-564.927	1/1:438:19,393,24:19:670:393,24:13883,860:-1108.88,-63.7449,0,-1048.59,-52.3026,-1095.92	1/2:358:11,311,35:11:375:311,35:10874,1260:-883.522,-67.0141,-3.81848,-789.393,0,-809.283	1/2:727:54,531,141:54:1940:531,141:18653,5017:-1621.78,-225.904,-224.326,-1253.85,0,-1369.67	1/2:2772:450,1534,777:450:15924:1534,777:54240,27779:-5063.73,-892.589,-1727.85,-3009.56,0,-4072.7	1/2:1355:219,622,507:219:7709:622,507:21923,18142:-2381.54,-749.591,-1189.93,-1070.28,0,-1545.24	0/1:441:88,267,85:88:3125:267,85:9387,3038:-687.558,0,-174.266,-482.395,-22.9981,-711.445	0/1:111:12,93,5:12:417:93,5:3260,180:-248.634,0,-5.91096,-238.657,-20.3205,-271.055	0/1:1030:271,575,181:271:9573:575,181:20172,6444:-1483.59,0,-576.379,-1081.42,-265.728,-1776.4	1/2:293:59,154,79:59:2103:154,79:5447,2825:-453.303,-48.6156,-168.387,-256.314,0,-398.659	1/2:3749:838,1612,1283:838:29592:1612,1283:56200,45899:-5219.02,-1116.92,-3014.12,-1971.89,0,-3968.13	1/2:698:174,335,188:174:6190:335,188:11829,6747:-910.516,-30.8679,-416.119,-445.93,0,-875.431	1/2:878:128,475,271:128:4528:475,271:16709,9667:-1626.22,-355.546,-581.372,-940.377,0,-1227.61	1/2:3743:614,1923,1187:614:21739:1923,1187:67288,42435:-6740.89,-1580.95,-2772.86,-3573.98,0,-4987.45	1/2:1628:343,878,393:343:12161:878,393:30796,14068:-2312.36,-83.2991,-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chr04	28980355	.	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chr04	28980390	.	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chr04	28981449	.	CGC	TGG,CGG	447501	PASS	AB=0.496966,0.501161;ABP=5.14517,3.323;AC=101,87;AF=0.537234,0.462766;AN=188;AO=15072,14047;CIGAR=1X1M1X,2M1X;DP=29180;DPB=29181.7;DPRA=0,0;EPP=32731.4,30505.7;EPPR=0;GTI=3;LEN=3,1;MEANALT=2.53191,2.53191;MQM=44.4771,30.3335;MQMR=0;NS=94;NUMALT=2;ODDS=3.75596;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=72,72;PQR=0;PRO=0;QA=513650,495767;QR=0;RO=0;RPL=0,0;RPP=32731.4,30505.7;RPPR=0;RPR=15072,14047;RUN=1,1;SAF=0,0;SAP=32731.4,30505.7;SAR=15072,14047;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:144:0,49,95:0:0:49,95:1642,3345:-329.622,-201.021,-186.271,-128.906,0,-100.309	1/2:173:0,91,82:0:0:91,82:3115,2893:-416.776,-175.277,-147.883,-241.797,0,-217.113	1/2:413:0,205,208:0:0:205,208:7011,7330:-1004.55,-454.509,-392.798,-550.349,0,-487.734	1/2:806:0,456,350:0:0:456,350:15409,12334:-1981.71,-767.125,-629.855,-1214.89,0,-1109.53	1/2:245:0,91,154:0:0:91,154:3137,5481:-584.765,-334.7,-307.306,-250.38,0,-204.022	1/2:257:0,131,124:0:0:131,124:4409,4390:-605.28,-264.33,-224.895,-340.968,0,-303.641	1/2:285:0,126,159:0:0:126,159:4256,5624:-681.528,-344.079,-306.149,-337.755,0,-289.891	1/2:370:0,152,216:0:0:152,216:5148,7583:-858.434,-455.364,-409.608,-403.079,0,-338.056	1/2:482:0,231,251:0:0:231,251:7964,8881:-1167.01,-544.86,-475.322,-622.46,0,-546.901	1/2:115:0,61,54:0:0:61,54:2079,1918:-283.524,-120.075,-101.712,-163.753,0,-147.497	1/2:95:0,62,33:0:0:62,33:2077,1165:-238.224,-74.7342,-56.0703,-163.789,0,-153.855	1/2:485:0,263,219:0:0:263,219:8965,7640:-1181.44,-482.291,-403.12,-699.162,0,-633.236	1/2:413:0,249,164:0:0:249,164:8451,5772:-1018.61,-357.244,-282.287,-661.663,0,-612.294	1/2:131:0,63,68:0:0:63,68:2206,2412:-323.396,-147.114,-128.15,-176.592,0,-156.122	1/2:174:0,88,85:0:0:88,85:3003,2997:-426.046,-187.226,-160.736,-238.856,0,-213.269	1/2:262:0,156,106:0:0:156,106:5321,3752:-655.841,-233.119,-186.158,-423.022,0,-391.113	1/2:146:0,88,58:0:0:88,58:3019,2034:-366.316,-126.831,-100.341,-239.785,0,-222.325	1/2:142:0,79,63:0:0:79,63:2707,2230:-351.421,-140.955,-117.174,-210.768,0,-191.803	1/2:121:0,96,25:0:0:96,25:3278,893:-312.755,-55.9573,-27.0584,-257.088,0,-249.563	1/2:508:0,245,263:0:0:245,263:8338,9299:-1239.27,-579.001,-505.248,-660.579,0,-581.408	1/2:663:0,374,286:0:0:374,286:12813,10145:-1659.44,-636.04,-523.455,-1023.41,0,-937.314	1/2:159:0,37,122:0:0:37,122:1264,4333:-344.437,-255.473,-244.335,-89.2564,0,-52.5308	1/2:195:0,106,89:0:0:106,89:3583,3135:-476.655,-193.594,-161.684,-283.361,0,-256.57	1/2:342:0,154,188:0:0:154,188:5193,6588:-811.139,-398.552,-352.193,-412.89,0,-356.296	1/2:469:0,158,311:0:0:158,311:5359,11039:-1091.15,-664.042,-616.479,-427.426,0,-333.805	1/2:431:0,82,347:0:0:82,347:2805,12263:-924.212,-725.829,-701.145,-198.466,0,-94.0082	1/2:585:0,307,275:0:0:307,275:10425,9707:-1437.91,-608.893,-516.477,-829.029,0,-746.246	1/2:70:0,39,31:0:0:39,31:1342,1095:-172.877,-66.646,-54.9058,-106.531,0,-97.199	1/2:333:0,66,265:0:0:66,265:2211,9396:-709.401,-549.586,-529.718,-159.852,0,-80.0792	1/2:183:0,83,100:0:0:83,100:2789,3566:-435.87,-216.056,-191.071,-220.117,0,-190.014	1/2:177:0,95,82:0:0:95,82:3218,2906:-431.985,-176.11,-147.513,-256.174,0,-231.49	1/1:335:0,327,4:0:0:327,4:11071,144:-968.197,-98.4368,0,-956.465,-86.6827,-955.261	1/2:114:0,92,22:0:0:92,22:3142,775:-295.4,-47.4454,-19.7506,-248.238,0,-241.615	1/1:145:0,131,13:0:0:131,13:4457,464:-386.023,-39.4349,0,-357.581,-10.9454,-353.668	1/1:567:0,551,16:0:0:551,16:18698,552:-1622.67,-165.868,0,-1587.33,-130.245,-1582.52	1/1:213:0,191,22:0:0:191,22:6516,779:-561.311,-57.4967,0,-511.881,-7.83608,-505.258	1/2:542:0,100,440:0:0:100,440:3392,15454:-1201.27,-957.751,-927.648,-243.531,0,-111.078	1/2:349:0,148,201:0:0:148,201:5091,7066:-843.623,-441.505,-396.952,-402.429,0,-341.922	1/2:127:0,92,33:0:0:92,33:3169,1150:-320.606,-76.0341,-48.3393,-244.596,0,-234.662	1/1:69:0,65,4:0:0:65,4:2223,144:-194.525,-19.567,0,-185.347,-10.0975,-184.143	1/2:274:0,159,115:0:0:159,115:5442,4078:-687.1,-253.252,-205.389,-434.15,0,-399.532	1/2:122:0,86,36:0:0:86,36:2944,1253:-311.848,-79.6071,-53.7185,-232.536,0,-221.699	1/2:416:0,205,208:0:0:205,208:6995,7374:-1004.72,-448.261,-386.55,-556.515,0,-493.901	1/2:120:0,73,47:0:0:73,47:2491,1646:-302.881,-106.997,-85.0216,-196.187,0,-182.039	1/2:294:0,166,128:0:0:166,128:5650,4497:-720.002,-270.137,-220.166,-450.162,0,-411.63	1/2:366:0,58,306:0:0:58,306:1957,10793:-765.987,-624.235,-606.776,-141.792,0,-49.677	1/2:297:0,133,164:0:0:133,164:4559,5773:-711.334,-356.938,-316.901,-354.702,0,-305.333	1/2:872:0,410,459:0:0:410,459:13982,16134:-2083.63,-977.073,-853.65,-1106.62,0,-968.445	1/2:329:0,164,164:0:0:164,164:5594,5792:-798.549,-357.603,-308.234,-441.049,0,-391.68	1/2:189:0,109,80:0:0:109,80:3718,2794:-465.025,-173.498,-140.685,-291.825,0,-267.743	2/2:631:0,64,563:0:0:64,563:2179,19995:-1347.78,-1192.17,-1172.91,-169.48,-13.8062,0	1/1:81:0,77,3:0:0:77,3:2629,108:-231.125,-23.1793,0,-224.88,-17,-223.977	1/2:653:0,321,331:0:0:321,331:10992,11724:-1582.93,-723.137,-626.506,-859.744,0,-760.103	1/2:89:0,20,69:0:0:20,69:696,2451:-192.078,-143.552,-137.532,-48.8194,0,-28.0483	1/2:117:0,99,18:0:0:99,18:3344,648:-300.525,-40.2106,-10.4087,-260.601,0,-255.183	1/2:528:0,251,275:0:0:251,275:8664,9671:-1297.72,-605.528,-529.969,-692.224,0,-609.441	1/2:230:0,125,105:0:0:125,105:4269,3715:-565.204,-228.507,-190.878,-336.998,0,-305.39	1/2:40:0,26,14:0:0:26,14:875,491:-91.0599,-27.918,-20.0913,-63.4124,0,-59.198	1/2:102:0,67,35:0:0:67,35:2281,1242:-243.398,-79.4085,-59.2395,-164.282,0,-153.746	1/2:337:0,160,177:0:0:160,177:5399,6200:-814.725,-383.875,-335.71,-431.155,0,-377.873	1/2:671:0,398,272:0:0:398,272:13571,9553:-1674.96,-598.896,-479.086,-1076.01,0,-994.128	1/1:59:0,54,5:0:0:54,5:1865,176:-163.795,-16.2556,0,-152.593,-4.76581,-151.088	1/2:213:0,29,183:0:0:29,183:951,6476:-463.374,-393.741,-385.011,-69.6729,0,-14.5844	1/2:702:0,333,369:0:0:333,369:11336,13076:-1689.98,-792.237,-691.994,-898.046,0,-786.966	1/2:142:0,67,75:0:0:67,75:2252,2663:-343.366,-165.548,-145.378,-178.123,0,-155.546	1/2:139:0,66,73:0:0:66,73:2242,2620:-335.409,-157.721,-137.853,-177.992,0,-156.017	1/2:614:0,319,294:0:0:319,294:10883,10414:-1509.58,-643.866,-547.838,-865.751,0,-777.248	1/2:181:0,87,94:0:0:87,94:3005,3352:-444.058,-205.922,-179.732,-238.444,0,-210.147	1/2:125:0,80,44:0:0:80,44:2785,1535:-317.031,-97.7225,-73.6401,-219.329,0,-206.084	1/2:290:0,135,154:0:0:135,154:4627,5466:-686.914,-323.753,-283.114,-363.252,0,-316.893	1/2:202:0,40,162:0:0:40,162:1342,5622:-445.325,-350.556,-338.515,-95.0617,0,-46.2949	1/2:77:0,59,18:0:0:59,18:2054,625:-196.988,-38.2502,-20.4895,-158.964,0,-153.546	1/2:719:0,368,345:0:0:368,345:12559,12128:-1729.92,-739.555,-628.776,-990.383,0,-886.527	1/2:263:0,168,95:0:0:168,95:5751,3395:-661.63,-211.843,-161.27,-450.087,0,-421.489	1/2:569:0,253,316:0:0:253,316:8643,11077:-1365.18,-678.938,-602.778,-686.553,0,-591.428	1/2:404:0,234,170:0:0:234,170:7999,5992:-1006.15,-374.825,-304.384,-631.622,0,-580.447	1/2:341:0,197,143:0:0:197,143:6703,5078:-828.419,-304.851,-245.548,-523.544,0,-480.497	1/2:296:0,165,130:0:0:165,130:5626,4587:-730.675,-286.242,-236.572,-444.525,0,-405.391	1/1:386:0,346,39:0:0:346,39:11668,1379:-1012.82,-104.156,0,-917.944,-9.25898,-906.204	1/2:356:0,176,180:0:0:176,180:6057,6356:-868.998,-388.133,-335.152,-481.17,0,-426.985	1/2:421:0,217,203:0:0:217,203:7481,7159:-1014.73,-431.488,-366.164,-583.279,0,-522.17	1/2:1017:0,463,553:0:0:463,553:15846,19651:-2442.85,-1186.41,-1047.04,-1256.36,0,-1089.89	1/2:221:0,125,96:0:0:125,96:4211,3366:-547.696,-214.618,-176.989,-333.38,0,-304.481	1/2:260:0,152,107:0:0:152,107:5098,3760:-633.231,-231.684,-185.928,-401.487,0,-369.277	1/2:87:0,51,36:0:0:51,36:1723,1269:-215.305,-78.7295,-63.377,-136.874,0,-126.037	1/2:300:0,165,135:0:0:165,135:5605,4704:-733.524,-293.097,-243.427,-440.727,0,-400.088	1/2:100:0,58,42:0:0:58,42:1994,1461:-245.481,-89.3011,-71.8414,-156.476,0,-143.832	1/2:239:0,139,100:0:0:139,100:4716,3509:-591.307,-223.676,-181.833,-367.932,0,-337.829	1/2:186:0,124,62:0:0:124,62:4289,2207:-472.306,-136.699,-99.3717,-335.903,0,-317.239	1/2:71:0,52,19:0:0:52,19:1733,661:-179.901,-42.0233,-26.3697,-138.168,0,-132.449	1/2:336:0,238,98:0:0:238,98:8062,3371:-857.29,-214.805,-143.159,-642.779,0,-613.278	1/2:131:0,80,51:0:0:80,51:2662,1801:-323.415,-114.874,-90.7919,-208.84,0,-193.487	1/2:660:0,374,286:0:0:374,286:12834,10135:-1648.71,-633.235,-520.649,-1015.78,0,-929.689	1/2:480:0,307,173:0:0:307,173:10521,6090:-1215.62,-378.58,-286.164,-837.336,0,-785.258
chr04	28981487	.	ATTTTTTCG	ATATTTTCG,ATATTTTCA	610481	PASS	AB=0.596033,0.327949;ABP=2918.71,9361.81;AC=106,82;AF=0.56383,0.43617;AN=188;AO=25132,12079;CIGAR=2M1X6M,2M1X5M1X;DP=40328;DPB=39669.8;DPRA=0,0.888904;EPP=54576.5,26232.2;EPPR=68.1545;GTI=10;LEN=1,9;MEANALT=4.5,4.52688;MQM=48.2553,26.7644;MQMR=56.5;NS=94;NUMALT=2;ODDS=10006.8;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=895777,322800;QR=1035;RO=30;RPL=25132,12079;RPP=54576.5,26232.2;RPPR=68.1545;RPR=0,0;RUN=1,1;SAF=0,0;SAP=54576.5,26232.2;SAR=25132,12079;SRF=0;SRP=68.1545;SRR=30;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:169:0,72,84:0:0:72,84:2557,2258:-361.453,-155.192,-133.518,-206.253,0,-180.967	1/2:191:0,97,75:0:0:97,75:3458,2019:-416.377,-138.806,-109.606,-277.574,0,-254.997	1/2:494:0,285,170:0:0:285,170:10144,4567:-1128.88,-313.998,-228.204,-814.863,0,-763.688	1/2:1053:0,668,297:0:0:668,297:23718,7971:-2442.42,-548.297,-347.209,-1894.08,0,-1804.67	1/2:305:1,135,137:1:36:135,137:4826,3693:-639.351,-251.236,-213.535,-385.451,0,-347.148	1/2:299:0,159,114:0:0:159,114:5666,3029:-660.138,-207.586,-159.722,-452.538,0,-418.22	1/2:357:0,178,143:0:0:178,143:6354,3847:-775.029,-264.539,-210.956,-510.462,0,-467.415	1/2:434:0,204,201:0:0:204,201:7255,5391:-955.268,-370.439,-309.029,-584.824,0,-524.317	1/2:546:0,293,217:0:0:293,217:10442,5840:-1239.08,-401.72,-313.518,-837.347,0,-772.023	1/2:160:0,91,46:0:0:91,46:3225,1238:-342.658,-85.0622,-57.6685,-257.56,0,-243.713	1/2:124:1,96,25:1:36:96,25:3426,673:-317.119,-43.2785,-17.3212,-271.161,0,-266.573	1/2:596:0,370,181:0:0:370,181:13238,4880:-1399.87,-335.704,-224.323,-1064.16,0,-1009.67	1/2:514:1,332,136:1:36:332,136:11863,3657:-1202.78,-248.598,-151.594,-951.524,0,-913.521	1/2:171:0,104,60:0:0:104,60:3725,1614:-410.747,-110.878,-79.5712,-299.821,0,-281.759	1/2:239:0,137,70:0:0:137,70:4893,1883:-520.956,-129.399,-88.1579,-391.527,0,-370.455	1/2:321:1,213,89:1:36:213,89:7618,2391:-771.626,-161.302,-100.121,-607.636,0,-583.782	1/2:174:0,112,51:0:0:112,51:4021,1370:-418.621,-94.0942,-60.3789,-324.502,0,-309.15	1/2:158:0,96,49:0:0:96,49:3412,1324:-364.439,-91.1006,-62.2017,-273.318,0,-258.568	1/2:139:0,110,20:0:0:110,20:3927,540:-351.471,-37.1297,-4.01639,-314.318,0,-308.298	1/2:648:0,383,226:0:0:383,226:13634,6080:-1511.02,-418.126,-302.832,-1092.85,0,-1024.82	1/2:874:0,581,236:0:0:581,236:20771,6322:-2105.52,-434.537,-259.639,-1670.95,0,-1599.91	1/2:298:0,155,106:0:0:155,106:5523,2746:-633.042,-186.678,-140.018,-446.352,0,-414.443	1/2:237:0,153,76:0:0:153,76:5401,2038:-571.326,-140.254,-94.1969,-431.012,0,-408.134	1/2:418:4,219,171:4:140:219,171:7790,4589:-926.791,-304.355,-249.822,-612.216,0,-572.131	1/2:568:0,247,290:0:0:247,290:8793,7792:-1242.61,-535.717,-461.363,-706.871,0,-619.572	1/2:861:1,489,301:1:35:489,301:17482,7799:-1937.82,-527.355,-382.996,-1407.91,0,-1320.14	1/2:784:0,473,224:0:0:473,224:16892,6030:-1769.65,-414.805,-272.417,-1354.81,0,-1287.38	1/2:89:0,60,26:0:0:60,26:2149,693:-220.128,-47.4525,-29.3907,-172.65,0,-164.823	1/2:662:0,370,235:0:0:370,235:13263,6096:-1487.61,-414.622,-303.241,-1072.98,0,-1002.24	1/2:243:0,132,92:0:0:132,92:4652,2468:-540.02,-169.642,-129.906,-370.339,0,-342.644	1/2:228:0,134,75:0:0:134,75:4740,2013:-518.743,-138.556,-98.2182,-380.152,0,-357.575	1/1:482:0,453,0:0:0:453,0:15986,0:-1407.56,-136.367,0,-1407.56,-136.367,-1407.56	1/1:159:1,124,18:1:30:124,18:4436,486:-388.767,-35.0357,0,-355.628,-3.91431,-352.501	1/1:213:0,178,11:0:0:178,11:6327,297:-558.699,-53.5833,0,-538.261,-33.1612,-534.95	1/1:822:0,742,12:0:0:742,12:26422,325:-2332.72,-223.364,0,-2310.33,-200.981,-2306.71	1/1:281:0,236,16:0:0:236,16:8367,423:-734.9,-71.0431,0,-705.84,-42.0032,-701.024	1/2:1428:1,1005,341:1:33:1005,341:35998,8843:-3512.67,-598.283,-298.416,-2912,0,-2812.01	1/2:448:0,238,164:0:0:238,164:8487,4412:-984.557,-303.468,-231.823,-681.068,0,-631.699	1/2:152:0,114,23:0:0:114,23:4064,623:-366.427,-42.8824,-8.56501,-323.519,0,-316.595	1/1:107:0,95,3:0:0:95,3:3388,81:-298.621,-28.5979,0,-293.049,-23.0473,-292.146	1/2:371:0,245,96:0:0:245,96:8755,2578:-882.15,-177.339,-103.587,-704.776,0,-675.877	1/2:181:0,138,29:0:0:138,29:4936,778:-447.941,-53.3845,-11.8423,-394.513,0,-385.783	1/2:560:0,301,194:0:0:301,194:10753,5202:-1220.36,-357.597,-266.987,-862.733,0,-804.333	1/2:150:0,107,36:0:0:107,36:3785,967:-369.037,-66.3673,-34.1571,-302.609,0,-291.772	1/2:394:0,245,118:0:0:245,118:8751,3162:-920.589,-217.061,-143.309,-703.483,0,-667.962	1/2:655:1,319,286:1:30:319,286:11404,7425:-1425.69,-502.525,-408.895,-921.062,0,-837.365	1/2:359:0,192,140:0:0:192,140:6860,3781:-810.586,-260.227,-202.429,-550.356,0,-508.212	1/2:1091:0,594,414:0:0:594,414:21104,11127:-2451.55,-764.917,-586.106,-1686.6,0,-1561.97	1/2:438:0,259,140:0:0:259,140:9198,3757:-993.197,-258.406,-180.439,-734.752,0,-692.608	1/2:267:0,176,69:0:0:176,69:6240,1855:-625.171,-127.449,-74.4676,-497.685,0,-476.914	1/2:1150:0,605,492:0:0:605,492:21579,12756:-2608.63,-867.728,-685.605,-1740.9,0,-1592.79	1/1:135:0,118,3:0:0:118,3:4193,81:-371.706,-35.5215,0,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chr04	29009864	.	T	G	171923	PASS	AB=0.48383;ABP=11.999;AC=140;AF=0.752688;AN=186;AO=6540;CIGAR=1X;DP=8602;DPB=8602;DPRA=31.1558;EPP=23.7621;EPPR=7.74911;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.7775;MQMR=59.9198;NS=93;NUMALT=1;ODDS=5.01013;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227298;QR=72715;RO=2057;RPL=0;RPP=14204.4;RPPR=4469.73;RPR=6540;RUN=1;SAF=3395;SAP=23.7621;SAR=3145;SRF=1062;SRP=7.74911;SRR=995;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:31,19:31:1104:19:667:-45.3031,0,-84.6191	1/1:111:0,111:0:0:111:3909:-351.981,-33.4143,0	1/1:93:0,93:0:0:93:3266:-294.159,-27.9958,0	1/1:98:0,98:0:0:98:3392:-305.497,-29.5009,0	0/1:62:37,24:37:1312:24:824:-55.7505,0,-99.6591	0/1:38:19,19:19:676:19:653:-47.6501,0,-49.7289	0/1:112:50,62:50:1784:62:2154:-160.395,0,-127.126	0/1:129:65,64:65:2336:64:2252:-164.109,0,-171.66	1/1:81:0,81:0:0:81:2811:-253.227,-24.3834,0	1/1:69:0,69:0:0:69:2438:-219.651,-20.7711,0	0/1:103:53,50:53:1854:50:1726:-124.571,0,-136.132	0/1:145:82,63:82:2884:63:2206:-155.15,0,-216.142	1/1:172:0,172:0:0:172:5989:-539.068,-51.7772,0	1/1:130:0,130:0:0:130:4566:-411.07,-39.1339,0	1/1:135:0,135:0:0:135:4720:-424.931,-40.6391,0	0/1:132:66,66:66:2311:66:2266:-164.434,0,-168.511	0/1:126:68,58:68:2407:58:2032:-145.221,0,-178.957	1/1:142:0,142:0:0:142:4900:-441.162,-42.7463,0	0/1:97:44,53:44:1559:53:1825:-135.327,0,-111.401	0/1:119:69,50:69:2451:50:1754:-122.306,0,-185.022	0/1:92:45,47:45:1608:47:1642:-120.361,0,-117.315	1/1:31:0,31:0:0:31:1103:-99.5752,-9.33193,0	1/1:46:0,46:0:0:46:1594:-143.734,-13.8474,0	1/1:72:3,69:3:108:69:2399:-206.071,-11.599,0	1/1:46:0,46:0:0:46:1576:-142.124,-13.8474,0	0/1:132:70,62:70:2490:62:2128:-152.045,0,-184.616	0/1:142:76,64:76:2693:64:2213:-156.904,0,-200.093	0/1:89:45,44:45:1582:44:1543:-112.337,0,-115.877	1/1:146:0,146:0:0:146:5015:-451.499,-43.9504,0	0/1:44:23,21:23:819:21:715:-50.0426,0,-60.7862	0/1:72:40,32:40:1428:32:1140:-81.2244,0,-107.143	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/1:21:8,13:8:284:13:460:-35.4137,0,-19.5817	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:7:0,7:0:0:7:243:-22.2074,-2.10721,0	1/1:319:0,319:0:0:319:11012:-990.948,-96.0286,0	0/1:55:29,26:29:1026:26:896:-64.3917,0,-76.0947	1/1:128:0,128:0:0:128:4415:-395.546,-38.5318,0	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	1/1:107:1,106:1:36:106:3681:-327.88,-28.6119,0	0/1:88:45,43:45:1566:43:1456:-104.829,0,-114.109	0/1:113:63,50:63:2231:50:1740:-122.843,0,-167.038	0/1:151:88,63:88:3095:63:2166:-149.319,0,-233.304	1/1:141:0,141:0:0:141:4920:-442.943,-42.4452,0	1/1:56:0,56:0:0:56:1930:-173.943,-16.8577,0	1/1:78:3,75:3:108:75:2623:-224.964,-13.4052,0	0/1:98:44,54:44:1539:54:1871:-139.154,0,-109.297	0/1:57:34,23:34:1208:23:809:-55.971,0,-91.8674	1/1:105:0,105:0:0:105:3689:-332.214,-31.6082,0	0/1:111:55,56:55:1955:56:1954:-142.7,0,-142.811	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	1/1:96:1,95:1:27:95:3358:-299.731,-26.1991,0	0/1:23:13,10:13:450:10:334:-23.4592,0,-33.9048	1/1:10:0,10:0:0:10:328:-29.8371,-3.0103,0	1/1:96:0,96:0:0:96:3300:-297.204,-28.8989,0	0/1:52:26,26:26:924:26:905:-66.0955,0,-67.8241	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/1:61:33,28:33:1171:28:940:-66.5374,0,-87.3338	1/1:148:0,148:0:0:148:5106:-459.637,-44.5524,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:64:31,33:31:1108:33:1153:-84.8091,0,-80.7651	0/1:124:66,58:66:2352:58:2055:-147.893,0,-174.606	1/1:40:1,39:1:27:39:1380:-121.799,-9.34142,0	1/1:64:0,64:0:0:64:2222:-200.232,-19.2659,0	1/1:103:0,102:0:0:102:3596:-323.528,-30.7051,0	1/1:78:0,78:0:0:78:2725:-245.483,-23.4803,0	1/1:67:0,67:0:0:67:2374:-213.918,-20.169,0	1/1:56:1,55:1:36:55:1933:-170.647,-13.2594,0	0/1:186:88,98:88:3132:98:3387:-248.915,0,-225.798	0/1:12:7,5:7:252:5:167:-11.746,0,-19.4058	0/1:41:20,21:20:698:21:725:-53.2251,0,-50.7992	1/1:55:1,54:1:36:54:1876:-165.498,-12.9584,0	1/1:125:1,124:1:36:124:4375:-389.906,-34.0305,0	1/1:78:0,78:0:0:78:2697:-242.972,-23.4803,0	0/1:94:45,49:45:1578:49:1732:-127.862,0,-114.012	1/1:114:1,113:1:36:113:3914:-348.786,-30.7191,0	0/1:15:8,7:8:280:7:228:-16.3221,0,-21.0239	0/1:114:53,61:53:1834:61:2094:-154.408,0,-131.019	0/1:99:52,47:52:1839:47:1627:-116.909,0,-135.287	1/1:170:0,170:0:0:170:5919:-532.814,-51.1751,0	1/1:168:0,167:0:0:167:5789:-519.72,-50.272,0	1/1:145:0,145:0:0:145:5037:-453.463,-43.6494,0	0/1:182:94,88:94:3291:88:3022:-217.401,0,-241.625	0/1:233:112,121:112:3953:121:4214:-309.293,0,-285.825	1/1:56:0,56:0:0:56:1942:-175.047,-16.8577,0	1/1:111:0,111:0:0:111:3800:-342.192,-33.4143,0	1/1:146:1,145:1:27:145:5040:-451.049,-41.2506,0	1/1:123:0,123:0:0:123:4277:-385.073,-37.0267,0	0/1:139:53,86:53:1887:86:2986:-227.102,0,-128.256	0/1:120:82,38:82:2899:38:1303:-81.4391,0,-225.024	1/1:77:0,77:0:0:77:2665:-240.093,-23.1793,0	1/1:192:0,192:0:0:192:6688:-601.957,-57.7978,0
chr04	29174841	.	T	C	142507	PASS	AB=0.682696;ABP=768.678;AC=146;AF=0.784946;AN=186;AO=6576;CIGAR=1X;DP=7427;DPB=7427;DPRA=0;EPP=14282.6;EPPR=1848.76;GTI=9;LEN=1;MEANALT=1.01075;MQM=59.9872;MQMR=59.94;NS=93;NUMALT=1;ODDS=0.336983;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=234447;QR=30235;RO=850;RPL=0;RPP=14282.6;RPPR=1848.76;RPR=6576;RUN=1;SAF=0;SAP=14282.6;SAR=6576;SRF=0;SRP=1848.76;SRR=850;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:106:0,106:0:0:106:3783:-340.666,-31.9092,0	1/1:239:0,239:0:0:239:8524:-767.159,-71.9462,0	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:109:62,47:62:2209:47:1665:-117.323,0,-166.261	0/1:53:11,42:11:396:42:1477:-117.268,0,-20.0282	1/1:126:0,126:0:0:126:4480:-403.359,-37.9298,0	1/1:154:0,154:0:0:154:5489:-494.125,-46.3586,0	0/1:44:19,25:19:684:25:900:-68.0757,0,-48.645	0/1:67:26,41:26:932:41:1476:-112.967,0,-64.0299	1/1:90:0,90:0:0:90:3236:-291.461,-27.0927,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:91:0,91:0:0:91:3251:-292.811,-27.3937,0	0/1:54:18,36:18:631:36:1280:-99.2476,0,-40.8601	0/1:33:11,22:11:383:22:784:-60.9499,0,-24.8693	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:92:17,75:17:608:75:2673:-213.119,0,-27.3573	0/1:149:49,100:49:1752:100:3553:-275.124,0,-113.111	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:103:0,103:0:0:103:3676:-331.029,-31.0061,0	1/1:71:3,68:3:108:68:2402:-206.359,-11.298,0	1/1:44:0,44:0:0:44:1567:-141.321,-13.2453,0	0/1:133:14,119:14:504:119:4239:-341.65,0,-5.6611	0/1:168:36,132:36:1277:132:4696:-372.227,0,-64.6581	0/1:26:12,14:12:428:14:500:-37.5094,0,-31.032	1/1:236:0,236:0:0:236:8415:-757.354,-71.0431,0	0/1:63:14,49:14:504:49:1752:-138.999,0,-26.7332	0/1:54:6,48:6:216:48:1708:-137.75,0,-3.53489	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:17:5,12:5:180:12:428:-33.7413,0,-11.4346	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:308:1,307:1:36:307:10992:-985.575,-89.119,0	0/1:27:8,19:8:284:19:665:-52.045,0,-17.7755	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	.:.:.:.:.:.:.:.	1/1:128:0,128:0:0:128:4577:-412.095,-38.5318,0	0/1:21:8,13:8:284:13:468:-36.138,0,-19.5817	1/1:62:4,58:4:144:58:2045:-171.007,-5.35024,0	0/1:72:28,44:28:1004:44:1584:-121.177,0,-69.0017	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:98:0,98:0:0:98:3434:-309.271,-29.5009,0	1/1:76:0,76:0:0:76:2716:-244.684,-22.8783,0	0/1:77:14,63:14:500:63:2264:-180.843,0,-22.1569	0/1:56:11,45:11:396:45:1605:-127.88,0,-19.1251	1/1:93:0,93:0:0:93:3321:-299.107,-27.9958,0	0/1:83:22,61:22:777:61:2188:-172.2,0,-45.2649	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	0/1:55:13,42:13:460:42:1501:-118.827,0,-25.1649	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:159:0,159:0:0:159:5668:-510.234,-47.8638,0	0/1:23:6,17:6:216:17:603:-47.6758,0,-12.8668	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	0/1:17:2,15:2:72:15:536:-43.4573,0,-1.71921	0/1:24:4,20:4:144:20:716:-57.543,0,-6.0889	1/1:84:0,84:0:0:84:3015:-271.58,-25.2865,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:286:145,141:145:5185:141:5024:-366.213,0,-380.693	0/1:124:26,98:26:917:98:3495:-277.434,0,-45.5144	1/1:73:0,73:0:0:73:2592:-233.528,-21.9752,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:169:1,168:1:36:168:5996:-536.15,-47.2758,0	1/1:142:2,140:2:72:140:5009:-444.119,-35.9095,0	1/1:30:0,30:0:0:30:1069:-96.5218,-9.0309,0	1/1:44:0,44:0:0:44:1565:-141.14,-13.2453,0	0/1:33:13,20:13:464:20:716:-54.8337,0,-32.1635	0/1:33:22,11:22:758:11:378:-24.4151,0,-58.6002	0/1:122:37,85:37:1305:85:3040:-237.105,0,-81.0237	1/1:102:0,102:0:0:102:3645:-328.254,-30.7051,0	1/1:126:0,126:0:0:126:4479:-403.28,-37.9298,0	1/1:183:0,183:0:0:183:6501:-585.175,-55.0885,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:132:1,131:1:36:131:4644:-414.527,-36.1377,0	0/1:27:11,16:11:396:16:576:-44.0472,0,-27.8549	0/1:54:14,40:14:496:40:1421:-111.931,0,-28.7186	0/1:81:9,72:9:324:72:2588:-208.784,0,-5.12242	1/1:243:0,243:0:0:243:8598:-773.821,-73.1503,0	1/1:52:0,52:0:0:52:1838:-165.699,-15.6536,0	1/1:71:0,71:0:0:71:2524:-227.41,-21.3731,0	0/1:50:19,31:19:680:31:1116:-85.7002,0,-46.4777	0/1:144:49,95:49:1726:95:3381:-261.159,0,-112.045	1/1:23:0,23:0:0:23:812:-73.4009,-6.92369,0	1/1:95:0,95:0:0:95:3399:-306.124,-28.5979,0	1/1:75:0,75:0:0:75:2675:-240.995,-22.5773,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	0/1:70:30,40:30:1053:40:1425:-107.456,0,-74.0065	0/1:50:27,23:27:938:23:811:-58.2585,0,-69.6778	1/1:210:0,209:0:0:209:7422:-667.828,-62.9153,0	1/1:174:0,174:0:0:174:6201:-558.184,-52.3792,0
chr04	29174846	.	T	A	10745.6	PASS	AB=0.319069;ABP=760.496;AC=40;AF=0.215054;AN=186;AO=862;CIGAR=1X;DP=7530;DPB=7530;DPRA=0.915731;EPP=1874.82;EPPR=14469.4;GTI=9;LEN=1;MEANALT=1.04348;MQM=59.9269;MQMR=59.9809;NS=93;NUMALT=1;ODDS=0.270412;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30848;QR=238975;RO=6662;RPL=0;RPP=1874.82;RPPR=14469.4;RPR=862;RUN=1;SAF=0;SAP=1874.82;SAR=862;SRF=0;SRP=14469.4;SRR=6662;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:56:56,0:56:2001:0:0:0,-16.8577,-180.362	0/0:108:107,0:107:3833:0:0:0,-32.2102,-344.796	0/0:244:244,0:244:8761:0:0:0,-73.4513,-788.473	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:114:47,67:47:1676:67:2400:-181.917,0,-116.81	0/1:53:41,12:41:1457:12:428:-22.9042,0,-115.452	0/0:127:127,0:127:4542:0:0:0,-38.2308,-408.933	0/0:157:157,0:157:5629:0:0:0,-47.2617,-506.717	0/1:45:25,20:25:900:20:720:-51.5824,0,-67.7747	0/1:67:41,26:41:1472:26:932:-64.0299,0,-112.607	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.466	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/1:56:37,19:37:1332:19:680:-44.6715,0,-103.325	0/1:32:22,10:22:792:10:360:-23.1113,0,-61.9727	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:92:74,18:74:2645:18:648:-30.9571,0,-210.6	0/1:154:103,51:103:3693:51:1818:-117.543,0,-286.211	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.605	0/0:74:71,3:71:2548:3:108:0,-12.201,-219.495	0/0:45:45,0:45:1590:0:0:0,-13.5463,-143.386	0/1:133:119,14:119:4284:14:504:-5.6611,0,-345.698	0/1:170:133,37:133:4769:37:1328:-68.6471,0,-378.189	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	0/0:240:239,0:239:8566:0:0:0,-71.9462,-770.572	0/1:63:49,14:49:1764:14:504:-26.7332,0,-140.079	0/1:56:50,6:50:1796:6:216:-2.93283,0,-145.065	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:310:309,1:309:11104:1:36:0,-89.721,-995.646	0/1:28:19,8:19:684:8:288:-17.7798,0,-53.4027	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	.:.:.:.:.:.:.:.	0/0:131:131,0:131:4712:0:0:0,-39.4349,-424.237	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/0:62:58,4:58:2069:4:136:0,-6.08832,-173.903	0/1:72:44,28:44:1580:28:1008:-69.3622,0,-120.817	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.482	0/0:104:104,0:104:3725:0:0:0,-31.3071,-335.435	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/1:81:67,14:67:2378:14:504:-21.3147,0,-189.891	0/1:57:46,11:46:1656:11:396:-18.824,0,-132.17	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/1:83:60,23:60:2141:23:828:-49.8586,0,-167.97	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:55:43,12:43:1548:12:432:-22.6507,0,-123.056	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:164:163,0:163:5845:0:0:0,-49.0679,-525.754	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:17:15,2:15:540:2:72:-1.71921,0,-43.819	0/1:25:21,4:21:752:4:144:-5.78787,0,-60.4805	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:283:140,143:140:5028:143:5108:-374.669,0,-367.473	0/1:123:96,27:96:3448:27:957:-49.411,0,-273.505	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:173:172,1:172:6180:1:36:0,-48.4799,-552.591	0/0:141:139,2:139:5000:2:72:0,-35.6085,-443.308	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:34:21,13:21:756:13:464:-31.8625,0,-58.1322	0/1:34:11,23:11:396:23:828:-64.6091,0,-25.7477	0/1:120:83,37:83:2939:37:1311:-82.1673,0,-228.617	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842	0/0:129:129,0:129:4636:0:0:0,-38.8329,-417.401	0/0:186:186,0:186:6669:0:0:0,-55.9916,-600.284	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:135:133,1:133:4765:1:36:0,-37.0996,-425.407	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	0/1:55:41,14:41:1472:14:500:-28.7795,0,-116.219	0/1:79:70,9:70:2501:9:324:-5.72449,0,-201.559	0/0:246:246,0:246:8825:0:0:0,-74.0534,-794.232	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.957	0/1:53:34,19:34:1220:19:674:-45.0322,0,-94.1522	0/1:144:95,49:95:3416:49:1736:-113.166,0,-264.305	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:69:40,29:40:1428:29:1036:-72.7828,0,-108.01	0/1:51:23,28:23:828:28:1008:-75.6838,0,-59.4916	0/0:209:209,0:209:7490:0:0:0,-62.9153,-674.115	0/0:174:173,0:173:6212:0:0:0,-52.0782,-558.813
chr04	29174873	.	T	G	10730.8	PASS	AB=0.319595;ABP=757.509;AC=40;AF=0.215054;AN=186;AO=865;CIGAR=1X;DP=7537;DPB=7537;DPRA=0.916556;EPP=1872.66;EPPR=14296.2;GTI=9;LEN=1;MEANALT=1.08696;MQM=59.9353;MQMR=59.9757;NS=93;NUMALT=1;ODDS=0.496244;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30921;QR=238775;RO=6666;RPL=864;RPP=1872.66;RPPR=14296.2;RPR=1;RUN=1;SAF=0;SAP=1881.33;SAR=865;SRF=0;SRP=14478;SRR=6666;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:110:110,0:110:3918:0:0:0,-33.1133,-352.808	0/0:242:242,0:242:8658:0:0:0,-72.8493,-779.21	0/1:14:10,4:10:352:4:144:-9.0992,0,-27.8038	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:116:48,68:48:1728:68:2430:-184.033,0,-120.883	0/1:54:42,12:42:1474:12:432:-22.9656,0,-116.677	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.956	0/0:159:159,0:159:5708:0:0:0,-47.8638,-513.825	0/1:45:25,20:25:900:20:716:-51.2214,0,-67.7747	0/1:66:41,25:41:1464:25:896:-61.0924,0,-112.188	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:56:37,19:37:1328:19:684:-45.0326,0,-102.965	0/1:32:22,10:22:792:10:360:-23.1113,0,-61.9727	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:92:74,18:74:2645:18:648:-30.9571,0,-210.6	0/1:154:103,51:103:3673:51:1828:-118.442,0,-284.414	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:104:104,0:104:3721:0:0:0,-31.3071,-335.076	0/0:73:70,3:70:2497:3:108:0,-11.9,-214.906	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:132:117,14:117:4169:14:504:-5.90334,0,-335.595	0/1:168:131,37:131:4681:37:1332:-69.6093,0,-370.877	0/1:27:14,13:14:504:13:464:-33.9697,0,-37.5703	0/0:240:240,0:240:8612:0:0:0,-72.2472,-775.073	0/1:63:48,15:48:1711:15:532:-29.2482,0,-135.31	0/1:55:49,6:49:1741:6:212:-2.86815,0,-140.416	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:17:12,5:12:432:5:176:-11.0675,0,-34.1037	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:311:309,1:309:11093:1:36:0,-90.0808,-994.654	0/1:29:21,8:21:752:8:284:-17.1735,0,-59.2764	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	.:.:.:.:.:.:.:.	0/0:134:134,0:134:4763:0:0:0,-40.338,-428.825	0/1:21:12,8:12:432:8:284:-19.5945,0,-32.9145	0/0:62:55,4:55:1980:4:144:0,-4.80698,-165.161	0/1:75:46,29:46:1656:29:1031:-70.5254,0,-126.751	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.12	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.71	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:79:65,14:65:2336:14:504:-21.9167,0,-186.718	0/1:58:46,12:46:1648:12:432:-21.7615,0,-131.149	0/0:93:93,0:93:3309:0:0:0,-27.9958,-298.028	0/1:81:59,22:59:2120:22:792:-47.2222,0,-166.685	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:56:43,13:43:1529:13:446:-23.607,0,-121.043	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:162:162,0:162:5804:0:0:0,-48.7669,-522.455	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:16:14,2:14:504:2:72:-2.02024,0,-40.8816	0/1:24:20,4:20:705:4:144:-6.0889,0,-56.5481	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:288:143,145:143:5128:145:5183:-379.908,0,-374.962	0/1:125:100,25:100:3584:25:888:-42.6103,0,-285.138	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:174:173,1:173:6212:1:36:0,-48.7809,-555.468	0/0:140:138,2:138:4937:2:72:0,-35.3075,-437.642	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:45:45,0:45:1578:0:0:0,-13.5463,-142.306	0/1:35:22,13:22:792:13:464:-31.5615,0,-61.0696	0/1:33:11,22:11:396:22:792:-61.6717,0,-26.0488	0/1:121:84,37:84:2993:37:1328:-83.3976,0,-233.176	0/0:104:104,0:104:3713:0:0:0,-31.3071,-334.371	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/0:183:183,0:183:6557:0:0:0,-55.0885,-590.209	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:135:134,1:134:4805:1:36:0,-37.0408,-429.005	0/1:25:16,9:16:576:9:315:-21.1615,0,-44.6492	0/1:53:40,13:40:1436:13:468:-26.5051,0,-113.583	0/1:82:72,10:72:2592:10:360:-8.05984,0,-208.843	0/0:252:252,0:252:9001:0:0:0,-75.8596,-810.062	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/1:53:34,19:34:1216:19:684:-45.9357,0,-93.792	0/1:142:94,48:94:3384:48:1705:-110.918,0,-262.028	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:97:97,0:97:3492:0:0:0,-29.1999,-314.489	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:68:38,30:38:1360:30:1068:-75.962,0,-102.194	0/1:53:23,30:23:828:30:1059:-79.6658,0,-58.8895	0/0:211:211,0:211:7564:0:0:0,-63.5173,-680.776	0/0:173:173,0:173:6212:0:0:0,-52.0782,-559.172
chr04	29174886	.	C	A	143681	PASS	AB=0.678971;ABP=749.181;AC=146;AF=0.784946;AN=186;AO=6625;CIGAR=1X;DP=7501;DPB=7501;DPRA=0;EPP=14389;EPPR=1896.53;GTI=9;LEN=1;MEANALT=1.04301;MQM=59.9775;MQMR=59.9278;NS=93;NUMALT=1;ODDS=0.0879809;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236361;QR=31130;RO=872;RPL=6625;RPP=14389;RPPR=1896.53;RPR=0;RUN=1;SAF=0;SAP=14389;SAR=6625;SRF=0;SRP=1896.53;SRR=872;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1209:-109.112,-10.235,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:108:0,108:0:0:108:3854:-347.053,-32.5112,0	1/1:242:0,242:0:0:242:8627:-776.426,-72.8493,0	0/1:13:4,9:4:144:9:305:-23.8638,0,-9.40023	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/1:116:68,48:68:2433:48:1724:-120.524,0,-184.282	0/1:52:12,40:12:424:40:1432:-113.517,0,-22.8429	1/1:125:0,125:0:0:125:4428:-398.688,-37.6288,0	1/1:156:0,156:0:0:156:5567:-501.143,-46.9607,0	0/1:45:20,25:20:716:25:900:-67.7747,0,-51.2214	0/1:67:25,42:25:896:42:1508:-115.846,0,-60.7913	1/1:94:0,94:0:0:94:3375:-303.965,-28.2968,0	1/1:37:0,37:0:0:37:1309:-118.11,-11.1381,0	1/1:94:0,94:0:0:94:3353:-301.986,-28.2968,0	0/1:56:19,37:19:684:37:1315:-101.793,0,-45.0326	0/1:33:11,22:11:377:22:773:-59.9555,0,-24.3239	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:93:18,75:18:625:75:2684:-213.809,0,-28.5767	0/1:152:51,101:51:1824:101:3560:-274.849,0,-118.685	1/1:71:0,70:0:0:70:2516:-226.479,-21.0721,0	1/1:102:0,102:0:0:102:3616:-325.64,-30.7051,0	1/1:72:3,68:3:108:68:2417:-207.71,-11.6578,0	1/1:47:0,47:0:0:47:1665:-150.135,-14.1484,0	0/1:132:14,118:14:504:118:4194:-337.902,0,-5.96213	0/1:169:38,130:38:1364:130:4610:-364.278,0,-72.2739	0/1:27:13,14:13:464:14:504:-37.5703,0,-33.9697	1/1:235:0,235:0:0:235:8430:-758.701,-70.7421,0	0/1:63:14,49:14:504:49:1756:-139.359,0,-26.7332	0/1:56:6,50:6:216:50:1787:-144.254,0,-2.93283	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:17:5,12:5:176:12:428:-33.7413,0,-11.0675	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:305:1,304:1:36:304:10848:-972.624,-88.2159,0	0/1:29:8,21:8:288:21:752:-59.2764,0,-17.5375	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	.:.:.:.:.:.:.:.	1/1:133:0,133:0:0:133:4735:-426.306,-40.037,0	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	1/1:62:4,58:4:140:58:2059:-172.635,-5.71928,0	0/1:74:28,46:28:1008:46:1652:-126.692,0,-68.7601	1/1:75:0,75:0:0:75:2683:-241.714,-22.5773,0	1/1:100:0,100:0:0:100:3519:-316.918,-30.103,0	1/1:78:0,77:0:0:77:2760:-248.321,-23.1793,0	0/1:81:15,66:15:540:66:2337:-186.205,0,-24.5531	0/1:57:12,45:12:432:45:1616:-128.571,0,-22.0625	1/1:93:0,93:0:0:93:3291:-296.407,-27.9958,0	0/1:84:23,61:23:813:61:2180:-171.18,0,-48.2026	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:56:12,44:12:409:44:1546:-122.57,0,-20.2773	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:160:0,160:0:0:160:5730:-515.771,-48.1648,0	0/1:23:6,17:6:216:17:608:-48.1283,0,-12.8668	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:17:2,15:2:72:15:529:-42.8231,0,-1.71921	0/1:25:4,21:4:144:21:748:-60.1195,0,-5.78787	1/1:85:0,85:0:0:85:3040:-273.83,-25.5876,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:290:145,145:145:5156:145:5162:-377.417,0,-376.878	0/1:125:27,98:27:968:98:3497:-277.311,0,-49.8024	1/1:74:0,74:0:0:74:2622:-236.225,-22.2762,0	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	1/1:172:1,171:1:36:171:6075:-543.206,-48.1789,0	1/1:141:2,139:2:72:139:4973:-440.88,-35.6085,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:46:0,46:0:0:46:1641:-147.977,-13.8474,0	0/1:35:13,22:13:468:22:775:-59.5351,0,-31.9236	0/1:34:23,11:23:828:11:396:-25.7477,0,-64.6091	0/1:123:38,85:38:1348:85:3037:-236.532,0,-84.5936	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	1/1:130:0,130:0:0:130:4645:-418.211,-39.1339,0	1/1:186:0,186:0:0:186:6645:-598.126,-55.9916,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:134:1,133:1:36:133:4738:-422.979,-36.7397,0	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/1:54:14,40:14:500:40:1425:-112.29,0,-29.0806	0/1:79:10,69:10:345:69:2476:-199.311,0,-7.59945	1/1:245:0,245:0:0:245:8761:-788.468,-73.7524,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:73:0,73:0:0:73:2608:-234.968,-21.9752,0	0/1:54:19,35:19:680:35:1241:-95.7369,0,-45.2735	0/1:142:47,95:47:1692:95:3377:-261.4,0,-109.593	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:95:0,95:0:0:95:3397:-305.943,-28.5979,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	0/1:70:30,40:30:1080:40:1402:-105.316,0,-76.4412	0/1:52:30,22:30:1072:22:792:-55.9521,0,-81.1389	1/1:211:0,211:0:0:211:7532:-677.916,-63.5173,0	1/1:172:0,172:0:0:172:6184:-556.648,-51.7772,0
chr04	29186161	.	TGAA	CGAG,TGAG	181714	PASS	AB=0.492945,0.501176;ABP=4.48093,3.05115;AC=144,44;AF=0.765957,0.234043;AN=188;AO=6310,1726;CIGAR=1X2M1X,3M1X;DP=8075;DPB=8074.25;DPRA=0,0.894437;EPP=11909.3,3143.72;EPPR=3.0103;GTI=1;LEN=4,1;MEANALT=1.95745,2.35185;MQM=59.9311,59.9757;MQMR=60;NS=94;NUMALT=2;ODDS=5.24864;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=221738,61574;QR=71;RO=2;RPL=0,0;RPP=13705,3750.97;RPPR=7.35324;RPR=6310,1726;RUN=1,1;SAF=6096,1653;SAP=11909.3,3143.72;SAR=214,73;SRF=1;SRP=3.0103;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:37:0,16,21:0:0:16,21:531,756:-104.975,-62.0456,-57.2291,-43.2731,0,-36.9514	1/1:74:0,74,0:0:0:74,0:2607,0:-234.861,-22.2762,0,-234.861,-22.2762,-234.861	1/1:108:0,106,0:0:0:106,0:3689,0:-331.896,-31.9092,0,-331.896,-31.9092,-331.896	1/1:200:0,200,0:0:0:200,0:7019,0:-631.786,-60.206,0,-631.786,-60.206,-631.786	1/2:20:0,7,13:0:0:7,13:250,453:-57.5718,-37.1862,-35.079,-20.7395,0,-16.8261	1/2:29:1,12,16:1:35:12,16:418,572:-77.4857,-43.7993,-43.0343,-31.1419,0,-29.1733	1/2:42:0,23,19:0:0:23,19:812,675:-121.48,-55.3574,-48.4337,-66.4764,0,-60.7569	1/2:99:0,52,46:0:0:52,46:1811,1648:-281.765,-134.509,-118.855,-147.356,0,-133.509	1/1:77:0,77,0:0:0:77,0:2706,0:-243.77,-23.1793,0,-243.77,-23.1793,-243.77	1/1:138:0,136,0:0:0:136,0:4766,0:-428.773,-40.9401,0,-428.773,-40.9401,-428.773	1/2:62:0,37,25:0:0:37,25:1305,900:-179.86,-73.7953,-62.6572,-106.421,0,-98.8953	1/2:140:0,71,69:0:0:71,69:2525,2480:-408.453,-202.682,-181.309,-206.129,0,-185.358	1/1:113:0,113,0:0:0:113,0:4026,0:-362.526,-34.0164,0,-362.526,-34.0164,-362.526	1/1:66:0,66,0:0:0:66,0:2327,0:-209.69,-19.868,0,-209.69,-19.868,-209.69	1/1:113:0,110,0:0:0:110,0:3911,0:-351.879,-33.1133,0,-351.879,-33.1133,-351.879	1/2:89:0,41,47:0:0:41,47:1437,1688:-254.626,-137.699,-125.356,-116.922,0,-102.774	1/2:39:0,18,21:0:0:18,21:636,743:-112.666,-60.8707,-55.4521,-52.1489,0,-45.8273	1/1:43:0,41,2:0:0:41,2:1454,72:-130.796,-12.3422,0,-124.921,-6.10757,-124.319	1/2:35:0,18,17:0:0:18,17:620,612:-100.646,-50.2959,-44.8774,-50.7027,0,-45.5852	1/2:62:0,27,35:0:0:27,35:964,1250:-180.861,-102.269,-94.1409,-78.9495,0,-68.4135	1/2:149:0,70,77:0:0:70,77:2459,2745:-423.956,-223.815,-202.743,-200.197,0,-177.018	1/1:19:0,19,0:0:0:19,0:671,0:-60.7163,-5.71957,0,-60.7163,-5.71957,-60.7163	1/1:75:0,74,0:0:0:74,0:2581,0:-232.18,-22.2762,0,-232.18,-22.2762,-232.18	1/1:72:0,66,6:0:0:66,6:2301,216:-206.991,-19.868,0,-189.366,-1.88365,-187.56	1/1:32:0,32,0:0:0:32,0:1141,0:-103,-9.63296,0,-103,-9.63296,-103	1/2:207:0,121,85:0:0:121,85:4251,2997:-589.635,-244.067,-207.643,-345.619,0,-320.032	1/2:170:0,93,77:0:0:93,77:3278,2764:-492.713,-225.822,-197.826,-267.247,0,-244.067	1/2:44:0,28,16:0:0:28,16:976,576:-126.724,-47.3585,-38.9297,-79.7213,0,-74.9049	1/1:262:0,261,0:0:0:261,0:9215,0:-828.973,-78.5688,0,-828.973,-78.5688,-828.973	1/2:105:0,50,55:0:0:50,55:1731,1962:-300.968,-160.298,-145.247,-141.02,0,-124.464	1/2:101:0,37,64:0:0:37,64:1295,2281:-291.645,-186.284,-175.146,-105.713,0,-86.4467	1/2:14:0,6,8:0:0:6,8:183,288:-38.494,-23.8592,-22.053,-14.9633,0,-12.555	1/2:9:0,6,3:0:0:6,3:206,108:-25.8879,-9.17208,-7.3659,-17.0701,0,-16.167	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:9:0,9,0:0:0:9,0:298,0:-27.1399,-2.70927,0,-27.1399,-2.70927,-27.1399	1/1:219:0,218,0:0:0:218,0:7720,0:-694.482,-65.6245,0,-694.482,-65.6245,-694.482	1/2:57:0,34,23:0:0:34,23:1210,824:-166.174,-67.5596,-57.3246,-98.9713,0,-92.0476	1/1:46:0,46,0:0:0:46,0:1614,0:-145.546,-13.8474,0,-145.546,-13.8474,-145.546	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:139:0,137,2:0:0:137,2:4828,72:-434.293,-41.2411,0,-428.418,-35.0064,-427.816	1/2:38:0,24,13:0:0:24,13:849,468:-107.401,-38.2513,-31.0266,-69.2117,0,-65.2983	1/2:46:0,20,26:0:0:20,26:701,924:-132.69,-75.6509,-69.6303,-57.3915,0,-49.5647	1/2:80:0,45,34:0:0:45,34:1606,1190:-227.747,-96.8161,-83.2698,-130.934,0,-120.699	1/1:110:0,110,0:0:0:110,0:3868,0:-348.295,-33.1133,0,-348.295,-33.1133,-348.295	1/1:75:0,75,0:0:0:75,0:2624,0:-236.408,-22.5773,0,-236.408,-22.5773,-236.408	1/1:40:0,39,1:0:0:39,1:1340,36:-120.214,-11.7402,0,-117.277,-8.44293,-116.976	1/2:157:0,78,77:0:0:78,77:2733,2726:-444.461,-222.079,-198.599,-222.447,0,-199.268	1/2:109:0,59,48:0:0:59,48:2055,1715:-306.931,-139.826,-122.065,-167.099,0,-152.649	1/1:175:0,174,0:0:0:174,0:6136,0:-552.049,-52.3792,0,-552.049,-52.3792,-552.049	1/2:118:0,54,63:0:0:54,63:1920,2228:-338.054,-181.585,-165.33,-156.589,0,-137.625	1/2:7:0,6,1:0:0:6,1:215,36:-20.8306,-3.29724,-1.49106,-17.893,0,-17.592	1/1:91:0,91,0:0:0:91,0:3209,0:-289.035,-27.3937,0,-289.035,-27.3937,-289.035	1/2:41:0,12,29:0:0:12,29:427,1044:-120.344,-85.5449,-81.9326,-35.1561,0,-26.4262	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:167:0,166,0:0:0:166,0:5814,0:-523.142,-49.971,0,-523.142,-49.971,-523.142	1/2:24:0,10,14:0:0:10,14:343,496:-68.6025,-40.7598,-37.7495,-28.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chr04	29207435	.	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chr04	29225877	.	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chr04	29373755	.	G	T	38574.6	PASS	AB=0.445865;ABP=138.432;AC=46;AF=0.244681;AN=188;AO=2405;CIGAR=1X;DP=11141;DPB=11141;DPRA=1.13314;EPP=5225.4;EPPR=18968.7;GTI=3;LEN=1;MEANALT=1.03704;MQM=59.963;MQMR=59.9974;NS=94;NUMALT=1;ODDS=1.33971;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86021;QR=312805;RO=8734;RPL=2405;RPP=5225.4;RPPR=18968.7;RPR=0;RUN=1;SAF=0;SAP=5225.4;SAR=2405;SRF=0;SRP=18968.7;SRR=8734;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:275:275,0:275:9868:0:0:0,-82.7832,-888.057	0/1:28:23,5:23:828:5:180:-8.12322,0,-66.4153	0/1:41:27,14:27:972:14:504:-33.3559,0,-75.4557	0/1:74:29,45:29:1036:45:1612:-123.008,0,-71.2777	0/1:197:113,84:113:4032:84:2999:-210.836,0,-303.767	0/0:95:92,3:92:3288:3:108:0,-18.5227,-286.065	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.604	0/1:89:47,42:47:1671:42:1504:-108.863,0,-123.885	0/1:150:80,70:80:2872:70:2516:-181.537,0,-213.562	0/0:147:147,0:147:5268:0:0:0,-44.2514,-474.252	0/0:129:129,0:129:4599:0:0:0,-38.8329,-414.071	0/0:110:110,0:110:3939:0:0:0,-33.1133,-354.701	0/1:96:53,43:53:1900:43:1542:-110.162,0,-142.379	0/1:61:27,34:27:972:34:1201:-90.0308,0,-69.4351	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/1:44:28,16:28:1004:16:570:-38.3826,0,-77.4305	0/1:167:89,78:89:3184:78:2800:-201.968,0,-236.512	0/1:207:122,85:122:4368:85:3015:-209.264,0,-330.981	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.49	0/0:249:249,0:249:8900:0:0:0,-74.9565,-800.986	0/1:193:173,20:173:6204:20:720:-7.02959,0,-500.356	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453	0/1:354:194,160:194:6944:160:5737:-409.878,0,-518.461	0/1:194:87,107:87:3124:107:3837:-287.124,0,-222.986	0/1:37:23,14:23:824:14:504:-34.56,0,-63.3452	0/0:225:225,0:225:8045:0:0:0,-67.7317,-724.069	0/1:185:72,113:72:2588:113:4026:-306.836,0,-177.478	0/1:179:101,78:101:3632:78:2777:-196.286,0,-273.199	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:20:19,1:19:684:1:36:0,-2.42232,-58.2921	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:279:279,0:279:10011:0:0:0,-83.9874,-900.922	0/1:138:86,52:86:3084:52:1849:-125.146,0,-236.246	0/0:108:108,0:108:3871:0:0:0,-32.5112,-348.584	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:164:160,4:160:5728:4:144:0,-36.0553,-502.323	0/1:51:31,20:31:1104:20:720:-49.7762,0,-84.3181	0/1:176:111,65:111:3968:65:2317:-155.807,0,-304.33	0/1:117:67,50:67:2395:50:1800:-127.062,0,-180.586	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:183:100,83:100:3572:83:2950:-210.643,0,-266.6	0/1:130:66,64:66:2376:64:2296:-167.767,0,-174.963	0/0:167:165,1:165:5896:1:32:0,-47.1115,-527.532	0/1:158:73,85:73:2624:85:3045:-226.715,0,-188.844	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:150:86,64:86:3084:64:2300:-162.106,0,-232.633	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:182:182,0:182:6509:0:0:0,-54.7875,-585.893	0/1:50:28,22:28:1000:22:792:-56.5542,0,-75.2639	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:23:18,5:18:648:5:180:-9.62837,0,-51.7282	0/1:77:28,49:28:1008:49:1749:-134.513,0,-67.857	0/0:143:141,2:141:5056:2:72:0,-36.2106,-448.347	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:272:137,135:137:4880:135:4836:-353.514,0,-357.475	0/1:234:107,126:107:3836:126:4521:-336.552,0,-274.936	0/0:100:95,5:95:3401:5:180:0,-13.5689,-289.769	0/0:106:106,0:106:3781:0:0:0,-31.9092,-340.488	0/0:243:236,7:236:8452:7:252:0,-50.1213,-737.651	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:78:39,39:39:1392:39:1389:-101.827,0,-102.099	0/1:33:24,9:24:860:9:324:-19.5719,0,-67.7878	0/1:127:70,57:70:2508:57:2040:-145.633,0,-187.741	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/0:264:264,0:264:9433:0:0:0,-79.4719,-848.932	0/0:197:197,0:197:7060:0:0:0,-59.3029,-635.46	0/1:41:26,15:26:932:15:536:-36.2326,0,-71.8566	0/0:130:127,3:127:4548:3:108:0,-29.0587,-399.411	0/1:25:22,3:22:788:3:108:-2.54942,0,-63.719	0/1:113:71,42:71:2552:42:1485:-99.9261,0,-195.914	0/1:173:100,73:100:3580:73:2628:-184.688,0,-270.329	0/0:349:348,1:348:12480:1:36:0,-101.461,-1119.43	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:110:110,0:110:3931:0:0:0,-33.1133,-353.982	0/1:98:60,38:60:2148:38:1345:-91.8472,0,-164.087	0/1:215:114,101:114:4088:101:3591:-258.672,0,-303.384	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:124:124,0:124:4440:0:0:0,-37.3277,-399.771	0/0:107:107,0:107:3831:0:0:0,-32.2102,-344.986	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.317	0/1:170:82,88:82:2936:88:3164:-233.804,0,-213.299	0/1:147:86,61:86:3080:61:2180:-152.214,0,-233.177	0/0:148:148,0:148:5289:0:0:0,-44.5524,-476.145	0/0:187:187,0:187:6704:0:0:0,-56.2926,-603.435
chr04	29373781	.	T	C	57287	PASS	AB=0.512329;ABP=11.6843;AC=45;AF=0.239362;AN=188;AO=3390;CIGAR=1X;DP=13361;DPB=13361;DPRA=1.07356;EPP=7364.3;EPPR=21574.5;GTI=0;LEN=1;MEANALT=1;MQM=59.9817;MQMR=59.9735;NS=94;NUMALT=1;ODDS=2.048;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120914;QR=356346;RO=9970;RPL=0;RPP=7364.3;RPPR=21583.2;RPR=3390;RUN=1;SAF=3390;SAP=7364.3;SAR=0;SRF=9969;SRP=21643.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:37,33:37:1305:33:1184:-85.7962,0,-96.6773	0/0:242:242,0:242:8652:0:0:0,-72.8493,-778.401	0/0:191:191,0:191:6840:0:0:0,-57.4967,-615.443	0/0:291:291,0:291:10393:0:0:0,-87.5997,-934.862	0/1:88:52,36:52:1868:36:1279:-88.9218,0,-141.909	0/1:37:16,21:16:572:21:748:-56.5072,0,-40.6753	0/1:248:131,117:131:4655:117:4174:-301.187,0,-344.457	0/1:237:119,118:119:4256:118:4215:-308.187,0,-311.875	0/0:115:115,0:115:4095:0:0:0,-34.6184,-368.737	0/0:155:154,1:154:5512:1:36:0,-43.0614,-492.608	0/1:142:58,84:58:2076:84:3003:-227.752,0,-144.364	0/1:104:56,48:56:2008:48:1720:-123.778,0,-149.686	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.836	0/0:113:113,0:113:4023:0:0:0,-34.0164,-362.26	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/1:89:44,45:44:1584:45:1591:-116.688,0,-116.06	0/1:130:72,58:72:2580:58:2071:-147.526,0,-193.315	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/1:134:69,65:69:2464:65:2336:-170.161,0,-181.676	0/1:307:165,142:165:5912:142:5079:-364.838,0,-439.772	0/1:173:88,85:88:3160:85:3006:-218.693,0,-232.546	0/0:139:138,1:138:4952:1:32:0,-38.6439,-442.629	0/0:134:132,2:132:4713:2:72:0,-33.5013,-417.492	0/0:163:155,8:155:5544:8:284:0,-23.1645,-473.182	0/0:124:124,0:124:4391:0:0:0,-37.3277,-395.362	0/1:397:192,205:192:6868:205:7292:-536.818,0,-498.658	0/1:266:113,153:113:4008:153:5470:-412.354,0,-280.836	0/1:57:30,27:30:1072:27:972:-70.6392,0,-79.6337	0/0:414:414,0:414:14767:0:0:0,-124.626,-1328.77	0/1:181:93,88:93:3325:88:3143:-228.607,0,-244.98	0/1:143:80,63:80:2868:63:2239:-158.726,0,-215.31	0/1:25:15,10:15:528:10:360:-25.2186,0,-40.3256	0/1:52:17,35:17:579:35:1252:-97.3315,0,-36.7747	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:25:7,18:7:252:18:640:-50.4036,0,-15.5032	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:260:260,0:260:9284:0:0:0,-78.2678,-835.472	0/1:306:139,167:139:4961:167:5956:-444.031,0,-354.524	0/0:127:127,0:127:4540:0:0:0,-38.2308,-408.768	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:138:136,2:136:4860:2:68:0,-35.0844,-431.097	0/1:97:58,39:58:2084:39:1404:-97.4594,0,-158.63	0/1:208:125,83:125:4464:83:2954:-203.479,0,-339.317	0/1:126:57,69:57:2033:69:2467:-184.354,0,-145.311	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.847	0/0:118:118,0:118:4219:0:0:0,-35.5215,-379.89	0/0:158:158,0:158:5648:0:0:0,-47.5627,-508.441	0/1:301:119,182:119:4226:182:6472:-491.956,0,-289.91	0/1:181:76,105:76:2728:105:3739:-282.225,0,-191.276	0/0:210:210,0:210:7527:0:0:0,-63.2163,-677.469	0/1:275:137,138:137:4885:138:4927:-360.798,0,-357.016	0/1:30:17,13:17:608:13:447:-31.5268,0,-46.0211	0/0:184:184,0:184:6569:0:0:0,-55.3895,-591.292	0/1:69:35,34:35:1252:34:1212:-88.6153,0,-92.214	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:157:157,0:157:5616:0:0:0,-47.2617,-505.558	0/1:60:39,21:39:1383:21:752:-49.9445,0,-106.706	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5245	0/1:25:17,8:17:612:8:288:-18.7417,0,-47.8877	0/1:70:38,32:38:1368:32:1152:-82.918,0,-102.304	0/0:196:195,1:195:6988:1:36:0,-55.4036,-625.382	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:255:115,140:115:4128:140:5011:-374.374,0,-294.94	0/1:224:101,123:101:3612:123:4401:-328.831,0,-257.855	0/0:98:95,3:95:3393:3:100:0,-20.1705,-296.253	0/0:146:146,0:146:5212:0:0:0,-43.9504,-469.22	0/0:207:207,0:207:7392:0:0:0,-62.3132,-665.324	0/0:97:92,5:92:3304:5:176:0,-13.0149,-281.393	0/0:89:89,0:89:3171:0:0:0,-26.7917,-285.615	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/1:101:44,57:44:1561:57:2019:-151.578,0,-110.376	0/1:35:15,20:15:536:20:716:-54.2317,0,-38.0388	0/1:123:56,67:56:1996:67:2388:-178.151,0,-142.887	0/0:129:129,0:129:4611:0:0:0,-38.8329,-415.154	0/0:216:215,1:215:7716:1:36:0,-61.4242,-690.096	0/0:273:273,0:273:9744:0:0:0,-82.1812,-876.907	0/1:146:74,72:74:2633:72:2572:-187.78,0,-193.266	0/0:153:153,0:153:5488:0:0:0,-46.0576,-494.046	0/1:30:6,24:6:212:24:860:-68.6909,0,-10.3939	0/1:162:79,83:79:2832:83:2957:-217.595,0,-206.352	0/1:200:98,102:98:3502:102:3623:-266,0,-254.994	0/0:312:312,0:312:11153:0:0:0,-93.9214,-1003.66	0/0:92:92,0:92:3273:0:0:0,-27.6948,-294.79	0/0:108:108,0:108:3879:0:0:0,-32.5112,-349.303	0/1:170:93,77:93:3344:77:2746:-196.205,0,-249.996	0/1:174:86,88:86:3084:88:3143:-230.716,0,-225.408	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:82:81,0:81:2892:0:0:0,-24.3834,-260.265	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:141:141,0:141:5063:0:0:0,-42.4452,-455.812	0/1:181:80,101:80:2824:101:3602:-269.9,0,-199.912	0/1:116:46,70:46:1656:70:2492:-189.612,0,-114.409	0/0:115:115,0:115:4093:0:0:0,-34.6184,-368.556	0/0:137:137,0:137:4875:0:0:0,-41.2411,-438.906
chr04	29373799	.	G	A	214369	PASS	AB=0.495358;ABP=4.23995;AC=143;AF=0.760638;AN=188;AO=10129;CIGAR=1X;DP=13471;DPB=13471;DPRA=0;EPP=21911.1;EPPR=7210.19;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9646;MQMR=59.9883;NS=94;NUMALT=1;ODDS=3.59157;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=361491;QR=119207;RO=3339;RPL=10108;RPP=21815.8;RPPR=7175.59;RPR=21;RUN=1;SAF=10116;SAP=21885.1;SAR=13;SRF=3335;SRP=7218.85;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:34,39:34:1203:39:1400:-104.324,0,-86.5998	1/1:241:0,241:0:0:241:8579:-772.09,-72.5482,0	1/1:205:0,205:0:0:205:7292:-656.101,-61.7112,0	1/1:293:0,293:0:0:293:10439:-939.005,-88.2018,0	0/1:91:38,53:38:1360:53:1885:-142.533,0,-95.3069	0/1:39:21,18:21:747:18:648:-46.9117,0,-55.8141	0/1:246:113,133:113:4018:133:4726:-351.449,0,-287.754	0/1:236:117,119:117:4164:119:4253:-311.905,0,-303.899	1/1:115:0,115:0:0:115:4108:-369.906,-34.6185,0	1/1:158:1,157:1:36:157:5606:-501.064,-43.9645,0	0/1:144:83,61:83:2954:61:2192:-154.197,0,-222.743	0/1:102:44,58:44:1571:58:2065:-155.188,0,-110.976	1/1:125:0,124:0:0:124:4429:-398.571,-37.3277,0	1/1:114:0,114:0:0:114:4080:-367.386,-34.3174,0	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	0/1:88:44,44:44:1540:44:1565:-114.649,0,-112.398	0/1:129:57,72:57:2012:72:2588:-194.336,0,-142.518	1/1:93:0,93:0:0:93:3308:-297.939,-27.9958,0	0/1:132:64,68:64:2283:68:2434:-179.579,0,-165.995	0/1:313:142,171:142:5048:171:6102:-455.059,0,-360.245	0/1:172:83,89:83:2975:89:3188:-235.366,0,-216.205	1/1:148:1,147:1:36:147:5252:-469.22,-40.9542,0	1/1:137:0,137:0:0:137:4874:-438.809,-41.2411,0	1/1:165:9,156:9:320:156:5584:-473.541,-20.5276,0	1/1:127:0,127:0:0:127:4552:-409.846,-38.2308,0	0/1:395:203,192:203:7254:192:6844:-497.124,0,-534.004	0/1:269:154,115:154:5495:115:4097:-287.938,0,-413.701	0/1:58:27,31:27:968:31:1112:-82.9316,0,-69.9776	1/1:412:0,412:0:0:412:14695:-1322.27,-124.024,0	0/1:180:87,93:87:3116:93:3332:-245.912,0,-226.477	0/1:146:62,84:62:2208:84:2994:-225.719,0,-155.035	0/1:24:10,14:10:360:14:492:-37.3876,0,-25.5196	0/1:52:35,17:35:1256:17:608:-39.3985,0,-97.6917	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:24:17,7:17:608:7:252:-15.8042,0,-47.8273	1/1:47:0,47:0:0:47:1677:-151.217,-14.1484,0	1/1:271:1,270:1:36:270:9623:-862.422,-77.9809,0	0/1:307:166,141:166:5937:141:5004:-358.095,0,-442.016	1/1:130:0,130:0:0:130:4643:-418.032,-39.1339,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:140:2,138:2:72:138:4919:-436.027,-35.3075,0	0/1:96:38,58:38:1360:58:2061:-156.86,0,-93.8017	0/1:212:85,127:85:3048:127:4511:-342.34,0,-210.731	0/1:126:69,56:69:2480:56:2008:-143.005,0,-185.464	1/1:98:0,98:0:0:98:3466:-312.133,-29.5009,0	1/1:121:0,121:0:0:121:4327:-389.606,-36.4246,0	1/1:157:0,157:0:0:157:5621:-506.009,-47.2617,0	0/1:296:176,120:176:6280:120:4275:-295.823,0,-476.189	0/1:184:104,80:104:3724:80:2868:-202.967,0,-279.972	1/1:213:0,213:0:0:213:7628:-686.555,-64.1194,0	0/1:268:132,136:132:4740:136:4868:-357.593,0,-346.081	0/1:27:10,17:10:360:17:612:-47.2856,0,-24.6165	1/1:183:0,183:0:0:183:6540:-588.684,-55.0885,0	0/1:67:31,36:31:1116:36:1291:-96.3246,0,-80.5827	1/1:55:0,55:0:0:55:1956:-176.316,-16.5567,0	1/1:155:0,155:0:0:155:5513:-496.297,-46.6597,0	0/1:60:21,39:21:747:39:1389:-107.246,0,-49.4925	1/1:18:0,18:0:0:18:640:-57.9275,-5.41854,0	0/1:26:8,18:8:288:18:648:-50.8251,0,-18.4406	0/1:73:33,40:33:1184:40:1414:-105.575,0,-84.8931	1/1:203:2,201:2:68:201:7211:-642.315,-54.6514,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:255:137,118:137:4903:118:4228:-303.937,0,-364.658	0/1:224:122,102:122:4340:102:3645:-260.823,0,-323.345	1/1:98:3,95:3:108:95:3400:-296.034,-19.4258,0	1/1:142:0,142:0:0:142:5074:-456.803,-42.7463,0	1/1:211:0,211:0:0:211:7501:-675.135,-63.5173,0	1/1:102:4,98:4:144:98:3476:-299.738,-17.3914,0	1/1:89:0,89:0:0:89:3178:-286.243,-26.7917,0	1/1:99:0,99:0:0:99:3522:-317.188,-29.802,0	0/1:102:57,45:57:2044:45:1612:-114.665,0,-153.527	0/1:36:18,18:18:648:18:644:-47.4535,0,-47.8148	0/1:119:63,56:63:2248:56:2004:-144.811,0,-166.761	1/1:131:0,131:0:0:131:4660:-419.563,-39.4349,0	1/1:215:1,214:1:36:214:7627:-682.811,-61.1232,0	1/1:275:0,275:0:0:275:9817:-883.475,-82.7833,0	0/1:148:70,78:70:2508:78:2800:-207.687,0,-181.42	1/1:155:0,155:0:0:155:5547:-499.353,-46.6597,0	0/1:30:24,6:24:860:6:216:-10.7596,0,-68.6909	0/1:161:84,77:84:3016:77:2753:-199.546,0,-223.2	0/1:203:102,101:102:3620:101:3622:-264.885,0,-264.897	1/1:310:0,310:0:0:310:11067:-995.922,-93.3193,0	1/1:97:0,96:0:0:96:3431:-308.643,-28.8989,0	1/1:111:0,111:0:0:111:3976:-358.03,-33.4143,0	0/1:170:75,95:75:2666:95:3390:-254.139,0,-189.006	0/1:172:87,85:87:3101:85:3028:-220.974,0,-227.539	1/1:60:0,60:0:0:60:2124:-191.426,-18.0618,0	1/1:84:0,84:0:0:84:2995:-269.782,-25.2865,0	1/1:90:0,90:0:0:90:3209:-289.032,-27.0927,0	1/1:142:0,142:0:0:142:5049:-454.558,-42.7463,0	0/1:180:98,82:98:3489:82:2935:-210.198,0,-260.035	0/1:116:70,46:70:2504:46:1630:-112.068,0,-190.693	1/1:121:0,121:0:0:121:4304:-387.537,-36.4246,0	1/1:138:0,138:0:0:138:4931:-443.942,-41.5421,0
chr04	29383651	.	A	G	101700	PASS	AB=0.499086;ABP=3.0341;AC=140;AF=0.744681;AN=188;AO=4901;CIGAR=1X;DP=6571;DPB=6571;DPRA=10.0829;EPP=10645.4;EPPR=3625.03;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.99;MQMR=60;NS=94;NUMALT=1;ODDS=0.144291;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173913;QR=58766;RO=1668;RPL=0;RPP=10645.4;RPPR=3625.03;RPR=4901;RUN=1;SAF=0;SAP=10645.4;SAR=4901;SRF=0;SRP=3625.03;SRR=1668;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:20,42:20:708:42:1500:-116.631,0,-45.3817	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:122:0,122:0:0:122:4348:-391.497,-36.7257,0	1/1:143:0,143:0:0:143:5087:-457.974,-43.0473,0	0/1:46:16,30:16:576:30:1076:-83.3055,0,-38.3276	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:110:58,52:58:2063:52:1864:-134.926,0,-152.827	0/1:95:45,50:45:1600:50:1784:-132.245,0,-115.692	1/1:87:1,86:1:36:86:3076:-273.47,-22.5913,0	1/1:50:0,50:0:0:50:1780:-160.483,-15.0515,0	0/1:34:22,12:22:776:12:424:-28.2614,0,-59.9271	0/1:63:44,19:44:1552:19:672:-41.8419,0,-121.007	1/1:27:0,27:0:0:27:952:-85.9952,-8.12781,0	1/1:19:0,19:0:0:19:667:-60.3546,-5.71957,0	1/1:20:0,20:0:0:20:693:-62.6896,-6.0206,0	0/1:32:24,8:24:851:8:288:-16.6344,0,-67.2765	0/1:22:16,6:16:568:6:212:-12.8021,0,-44.8292	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:20:17,3:17:608:3:104:-3.68221,0,-49.0314	0/1:181:85,96:85:2993:96:3444:-255.686,0,-215.117	0/1:94:55,39:55:1955:39:1360:-94.3987,0,-147.928	1/1:137:0,137:0:0:137:4878:-439.174,-41.2411,0	1/1:66:0,66:0:0:66:2350:-211.758,-19.868,0	0/1:74:12,62:12:419:62:2219:-177.698,0,-15.7665	1/1:99:0,99:0:0:99:3530:-317.909,-29.802,0	0/1:230:112,118:112:3928:118:4153:-304.719,0,-284.481	0/1:245:117,128:117:4111:128:4566:-337.354,0,-296.425	0/0:14:13,1:13:455:1:36:0,-0.616145,-37.6837	1/1:197:0,197:0:0:197:6962:-626.649,-59.3029,0	0/1:66:31,35:31:1078:35:1237:-91.7643,0,-77.4589	0/1:94:42,52:42:1461:52:1853:-138.751,0,-103.485	0/1:10:5,5:5:172:5:180:-13.5418,0,-12.8077	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:29:9,20:9:312:20:716:-56.0378,0,-19.6855	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:60:0,60:0:0:60:2130:-191.967,-18.0618,0	0/1:93:37,56:37:1307:56:1986:-151.017,0,-89.9349	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:102:0,102:0:0:102:3608:-324.927,-30.7051,0	0/1:29:20,9:20:695:9:316:-20.049,0,-54.1415	0/1:127:52,75:52:1814:75:2663:-201.686,0,-125.309	0/1:23:18,5:18:623:5:171:-8.80176,0,-49.4694	1/1:23:0,23:0:0:23:779:-70.4208,-6.92369,0	1/1:156:0,155:0:0:155:5487:-493.639,-46.6597,0	1/1:129:0,129:0:0:129:4596:-413.807,-38.8329,0	0/1:141:64,77:64:2249:77:2725:-203.048,0,-160.227	0/1:87:32,55:32:1139:55:1944:-149.044,0,-76.6288	1/1:80:0,80:0:0:80:2856:-257.278,-24.0824,0	0/1:139:79,60:79:2798:60:2134:-150.484,0,-210.217	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:122:0,122:0:0:122:4376:-394.013,-36.7257,0	0/1:19:9,10:9:315:10:342:-25.3895,0,-22.9677	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:99:0,99:0:0:99:3504:-315.571,-29.802,0	0/1:48:15,33:15:525:33:1184:-92.4189,0,-33.1286	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:22:12,10:12:414:10:347:-24.941,0,-30.9663	0/1:51:28,23:28:969:23:828:-59.4916,0,-72.1668	1/1:46:1,45:1:36:45:1587:-139.519,-10.2491,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:168:99,69:99:3490:69:2453:-170.45,0,-263.741	0/1:137:59,78:59:2059:78:2777:-208.929,0,-144.338	1/1:48:0,48:0:0:48:1693:-152.654,-14.4494,0	1/1:78:0,78:0:0:78:2746:-247.384,-23.4803,0	1/1:148:0,148:0:0:148:5224:-470.301,-44.5524,0	1/1:103:0,103:0:0:103:3631:-326.997,-31.0061,0	1/1:16:0,16:0:0:16:567:-51.3578,-4.81648,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:46:33,13:33:1128:13:449:-26.8901,0,-87.9741	0/1:27:19,8:19:680:8:284:-17.7755,0,-53.4014	0/1:119:52,67:52:1864:67:2396:-180.075,0,-132.217	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:123:0,123:0:0:123:4365:-392.536,-37.0267,0	1/1:128:0,128:0:0:128:4502:-405.35,-38.5318,0	0/1:104:38,66:38:1340:66:2348:-180.273,0,-89.5929	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	0/1:25:16,9:16:560:9:324:-21.9801,0,-43.203	0/1:77:39,38:39:1396:38:1337:-97.4486,0,-102.76	0/1:91:44,47:44:1564:47:1664:-122.654,0,-113.658	1/1:213:1,211:1:36:211:7451:-667.061,-60.56,0	1/1:33:0,33:0:0:33:1162:-104.885,-9.93399,0	1/1:30:0,30:0:0:30:1063:-95.9808,-9.0309,0	0/1:20:13,7:13:452:7:252:-17.0084,0,-34.9905	0/1:58:46,12:46:1643:12:423:-20.9453,0,-130.698	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:19:0,19:0:0:19:648:-58.6371,-5.71957,0	0/1:58:46,12:46:1605:12:415:-20.2205,0,-127.277	0/1:40:33,7:33:1163:7:252:-10.9878,0,-92.9349	1/1:145:0,145:0:0:145:5119:-460.855,-43.6494,0	1/1:27:0,27:0:0:27:950:-85.8134,-8.12781,0
chr04	29416308	.	A	G	157841	PASS	AB=0.593874;ABP=350.362;AC=143;AF=0.760638;AN=188;AO=7885;CIGAR=1X;DP=9749;DPB=9749;DPRA=0;EPP=17125.1;EPPR=3917.05;GTI=0;LEN=1;MEANALT=1.02128;MQM=40.6014;MQMR=59.9055;NS=94;NUMALT=1;ODDS=3.06498;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=282567;QR=66747;RO=1862;RPL=0;RPP=17125.1;RPPR=3977.1;RPR=7885;RUN=1;SAF=7885;SAP=17125.1;SAR=0;SRF=1855;SRP=3985.72;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:8,15:8:273:15:536:-37.769,0,-17.9765	1/1:126:0,126:0:0:126:4501:-381.196,-37.9298,0	1/1:121:0,121:0:0:121:4336:-364.875,-36.4246,0	1/1:270:0,270:0:0:270:9679:-844.57,-81.2781,0	0/1:61:22,39:22:792:39:1392:-100.604,0,-53.2428	0/1:66:22,44:22:792:44:1580:-113.097,0,-51.7377	0/1:163:58,105:58:2084:105:3772:-280.779,0,-138.758	0/1:108:40,68:40:1440:68:2440:-173.24,0,-97.3865	1/1:101:0,101:0:0:101:3617:-303.225,-30.404,0	1/1:105:0,105:0:0:105:3753:-327.851,-31.6082,0	0/1:53:34,19:34:1224:19:684:-44.1876,0,-94.4987	0/1:84:47,37:47:1692:37:1328:-86.8539,0,-127.276	1/1:61:0,61:0:0:61:2194:-184.056,-18.3628,0	1/1:41:0,41:0:0:41:1472:-126.446,-12.3422,0	1/1:64:0,64:0:0:64:2304:-201.658,-19.2659,0	0/1:57:30,27:30:1072:27:972:-66.4213,0,-79.6337	0/1:60:28,32:28:989:32:1152:-79.6014,0,-71.2602	1/1:61:0,61:0:0:61:2192:-184.657,-18.3628,0	0/1:37:15,22:15:540:22:792:-55.1057,0,-37.798	0/1:274:109,164:109:3886:164:5866:-429.263,0,-267.4	0/1:121:52,69:52:1860:69:2438:-173.309,0,-131.255	1/1:183:0,183:0:0:183:6548:-576.561,-55.0885,0	1/1:87:0,87:0:0:87:3130:-273.196,-26.1896,0	1/1:148:5,143:5:180:143:5125:-423.256,-28.0004,0	1/1:68:0,68:0:0:68:2424:-208.523,-20.47,0	0/1:337:117,220:117:4212:220:7888:-593.252,0,-277.766	0/1:195:53,142:53:1908:142:5077:-377.911,0,-113.294	0/1:42:25,17:25:885:17:612:-40.1956,0,-67.3233	1/1:328:0,328:0:0:328:11767:-1035.63,-98.7378,0	0/1:137:43,94:43:1533:94:3363:-248.319,0,-96.9635	0/1:132:54,78:54:1944:78:2797:-202.638,0,-135.5	0/1:23:11,12:11:396:12:432:-30.7303,0,-29.0138	0/1:22:6,16:6:216:16:572:-43.179,0,-13.1679	1/1:9:0,9:0:0:9:320:-27.2783,-2.70927,0	0/1:30:19,11:19:684:11:381:-23.6668,0,-52.8594	1/1:27:0,27:0:0:27:972:-81.4801,-8.12781,0	1/1:198:0,198:0:0:198:7085:-621.661,-59.6039,0	0/1:151:36,115:36:1296:115:4126:-309.477,0,-71.4884	1/1:46:0,46:0:0:46:1652:-139.342,-13.8474,0	1/1:11:0,11:0:0:11:381:-33.3087,-3.31133,0	1/1:170:5,165:5:180:165:5909:-491.939,-34.623,0	0/1:50:23,27:23:828:27:972:-68.5285,0,-59.7926	0/1:102:29,73:29:1029:73:2624:-194.43,0,-62.1985	0/1:68:31,37:31:1116:37:1328:-95.5374,0,-80.2817	1/1:72:0,72:0:0:72:2584:-225.729,-21.6742,0	1/1:146:0,146:0:0:146:5198:-456.341,-43.9504,0	1/1:129:0,129:0:0:129:4636:-390.737,-38.8329,0	0/1:177:63,114:63:2264:114:4084:-302.823,0,-150.74	0/1:102:41,61:41:1476:61:2196:-161.168,0,-102.431	1/1:122:0,122:0:0:122:4375:-380.457,-36.7257,0	0/1:202:77,125:77:2734:125:4472:-334.497,0,-185.492	0/1:19:12,7:12:432:7:252:-16.288,0,-33.5016	1/1:183:0,183:0:0:183:6580:-554.502,-55.0885,0	0/1:50:28,22:28:1008:22:792:-55.1029,0,-75.9849	1/1:29:0,29:0:0:29:1044:-87.2574,-8.72987,0	1/1:140:0,139:0:0:139:4992:-429.115,-41.8432,0	0/1:71:21,50:21:756:50:1766:-132.395,0,-46.9932	1/1:13:0,13:0:0:13:464:-41.397,-3.91339,0	0/1:53:21,32:21:748:32:1148:-85.4769,0,-51.6907	0/1:77:30,47:30:1080:47:1688:-122.356,0,-74.3233	1/1:91:1,90:1:36:90:3232:-277.473,-23.7955,0	1/1:14:0,14:0:0:14:504:-44.4405,-4.21442,0	0/1:193:67,126:67:2412:126:4517:-340.578,0,-159.231	0/1:179:80,99:80:2865:99:3560:-256.014,0,-204.092	1/1:92:2,90:2:72:90:3224:-271.22,-20.858,0	1/1:111:0,111:0:0:111:3988:-347.995,-33.4143,0	1/1:196:3,193:3:108:193:6896:-591.297,-48.9291,0	1/1:109:1,108:1:36:108:3869:-333.346,-29.214,0	1/1:22:0,22:0:0:22:777:-67.1525,-6.62266,0	1/1:102:0,102:0:0:102:3649:-304.653,-30.7051,0	0/1:60:33,27:33:1184:27:972:-67.004,0,-88.8056	0/1:19:8,11:8:288:11:392:-28.9304,0,-20.5478	0/1:184:63,121:63:2256:121:4343:-307.709,0,-147.91	1/1:62:0,62:0:0:62:2232:-189.367,-18.6639,0	1/1:168:0,168:0:0:168:5988:-515.305,-50.573,0	1/1:201:0,201:0:0:201:7211:-630.717,-60.507,0	0/1:78:35,43:35:1252:43:1540:-107.444,0,-89.5047	1/1:86:0,86:0:0:86:3069:-260.601,-25.8886,0	0/1:27:19,8:19:680:8:284:-16.3417,0,-53.4014	0/1:125:56,69:56:2016:69:2472:-175.981,0,-144.084	0/1:126:49,77:49:1756:77:2764:-194.862,0,-120.372	1/1:345:2,343:2:72:343:12327:-1066.46,-97.0186,0	1/1:96:0,96:0:0:96:3448:-300.482,-28.8989,0	1/1:46:0,46:0:0:46:1656:-143.849,-13.8474,0	0/1:76:45,31:45:1616:31:1116:-74.5248,0,-122.852	0/1:147:70,77:70:2520:77:2768:-197.844,0,-182.786	1/1:48:0,48:0:0:48:1720:-141.98,-14.4494,0	1/1:68:0,68:0:0:68:2444:-204.33,-20.47,0	1/1:50:0,50:0:0:50:1783:-150.869,-15.0515,0	1/1:24:0,24:0:0:24:864:-74.4648,-7.22472,0	0/1:106:67,39:67:2396:39:1404:-88.7997,0,-183.985	0/1:71:45,26:45:1597:26:936:-60.9403,0,-122.644	1/1:118:1,117:1:36:117:4166:-357.514,-31.9259,0	1/1:103:0,103:0:0:103:3696:-321.292,-31.0061,0
chr04	29416322	.	GG	GAAA,GA	201222	PASS	AB=0.594967,0.403939;ABP=361.006,369.302;AC=143,45;AF=0.760638,0.239362;AN=188;AO=7967,1872;CIGAR=1M2I1X,1M1X;DP=9855;DPB=17828;DPRA=0,1.3117;EPP=17303.1,3998.82;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.74468,2.125;MQM=40.5867,59.7511;MQMR=60;NS=94;NUMALT=2;ODDS=1.73516;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=282922,66980;QR=36;RO=1;RPL=7967,1871;RPP=17303.1,4059.33;RPPR=5.18177;RPR=0,1;RUN=1,1;SAF=7967,1865;SAP=17303.1,4007.43;SAR=0,7;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,15,7:0:0:15,7:538,252:-60.8864,-20.9217,-16.4063,-40.3148,0,-38.2076	1/1:127:0,127,0:0:0:127,0:4513,0:-382.132,-38.2308,0,-382.132,-38.2308,-382.132	1/1:121:0,121,0:0:0:121,0:4289,0:-361.527,-36.4246,0,-361.527,-36.4246,-361.527	1/1:273:0,272,0:0:0:272,0:9678,0:-844.775,-81.8802,0,-844.775,-81.8802,-844.775	1/2:61:0,39,22:0:0:39,22:1391,788:-171.397,-64.6221,-52.882,-107.126,0,-100.503	1/2:67:0,45,22:0:0:45,22:1595,784:-185.052,-64.2613,-50.7149,-121.139,0,-114.516	1/2:162:0,105,57:0:0:105,57:3757,2040:-463.514,-166.709,-135.101,-297.16,0,-280.001	1/2:112:0,72,40:0:0:72,40:2575,1436:-312.102,-117.496,-95.8223,-194.955,0,-182.914	1/1:101:0,101,0:0:0:101,0:3585,0:-301.618,-30.404,0,-301.618,-30.404,-301.618	1/1:106:0,106,0:0:0:106,0:3774,0:-329.93,-31.9092,0,-329.93,-31.9092,-329.93	1/2:53:0,19,34:0:0:19,34:680,1211:-152.847,-99.0467,-93.3272,-54.1514,0,-43.9164	1/2:85:0,38,47:0:0:38,47:1347,1683:-239.891,-137.607,-126.168,-102.628,0,-88.4798	1/1:62:0,61,0:0:0:61,0:2139,0:-180.639,-18.3628,0,-180.639,-18.3628,-180.639	1/1:42:0,42,0:0:0:42,0:1500,0:-128.847,-12.6433,0,-128.847,-12.6433,-128.847	1/1:65:0,65,0:0:0:65,0:2313,0:-202.057,-19.567,0,-202.057,-19.567,-202.057	1/2:57:0,26,31:0:0:26,31:909,1108:-161.009,-90.6244,-82.7976,-70.7288,0,-61.3969	1/2:61:0,32,29:0:0:32,29:1143,1040:-171.978,-84.8664,-75.2334,-87.4588,0,-78.729	1/1:61:0,61,0:0:0:61,0:2179,0:-183.975,-18.3628,0,-183.975,-18.3628,-183.975	1/2:37:0,22,15:0:0:22,15:778,540:-102.805,-44.4207,-37.798,-58.7314,0,-54.2159	1/2:274:0,161,112:0:0:161,112:5710,4010:-776.892,-326.857,-278.391,-450.112,0,-416.397	1/2:123:0,71,52:0:0:71,52:2520,1864:-347.684,-152.386,-131.013,-195.648,0,-179.995	1/1:188:0,185,2:0:0:185,2:6598,72:-580.18,-55.6906,0,-574.417,-49.8955,-573.814	1/1:87:0,87,0:0:0:87,0:3093,0:-270.685,-26.1896,0,-270.685,-26.1896,-270.685	1/1:151:0,145,6:0:0:145,6:5163,216:-443.284,-43.6494,0,-425.659,-25.665,-423.853	1/1:69:0,69,0:0:0:69,0:2449,0:-210.816,-20.7711,0,-210.816,-20.7711,-210.816	1/2:341:0,221,120:0:0:221,120:7808,4282:-970.517,-349.376,-282.848,-621.495,0,-585.371	1/2:194:0,144,50:0:0:144,50:5072,1800:-540.389,-147.228,-103.88,-393.515,0,-378.463	1/2:42:0,17,25:0:0:17,25:602,888:-119.335,-72.7133,-67.5958,-46.9669,0,-39.4412	1/1:335:0,333,2:0:0:333,2:11835,72:-1041.65,-100.243,0,-1035.88,-94.1264,-1035.28	1/2:136:0,94,42:0:0:94,42:3321,1496:-379.939,-122.235,-93.938,-258.054,0,-245.411	1/2:134:0,78,56:0:0:78,56:2748,2004:-378.474,-163.776,-140.296,-215.048,0,-198.19	1/2:24:0,13,11:0:0:13,11:460,392:-68.1329,-32.2635,-28.3501,-36.218,0,-32.9067	1/2:22:0,16,6:0:0:16,6:576,212:-62.5412,-17.6186,-12.8021,-45.2736,0,-43.4675	1/1:9:0,9,0:0:0:9,0:311,0:-26.6308,-2.70927,0,-26.6308,-2.70927,-26.6308	1/2:30:0,11,19:0:0:11,19:396,684:-86.3889,-56.1708,-52.8594,-30.5647,0,-24.8451	1/1:25:0,25,0:0:0:25,0:883,0:-75.2678,-7.52575,0,-75.2678,-7.52575,-75.2678	1/1:202:0,201,0:0:0:201,0:7133,0:-625.879,-60.507,0,-625.879,-60.507,-625.879	1/2:151:0,115,36:0:0:115,36:4079,1288:-421.628,-105.387,-70.7681,-316.595,0,-305.757	1/1:47:0,47,0:0:0:47,0:1665,0:-140.701,-14.1484,0,-140.701,-14.1484,-140.701	1/1:11:0,11,0:0:0:11,0:396,0:-34.5449,-3.31133,0,-34.5449,-3.31133,-34.5449	1/1:172:0,167,5:0:0:167,5:5969,180:-514.606,-50.272,0,-499.918,-35.2251,-498.413	1/2:51:0,27,24:0:0:27,24:960,864:-145.07,-70.8578,-62.73,-74.5624,0,-67.3377	1/2:104:0,74,30:0:0:74,30:2637,1080:-292.758,-88.4647,-66.1885,-204.648,0,-195.617	1/2:70:0,39,31:0:0:39,31:1377,1106:-198.858,-90.4951,-78.7549,-108.713,0,-99.3807	1/1:72:0,72,0:0:0:72,0:2565,0:-224.174,-21.6742,0,-224.174,-21.6742,-224.174	1/1:148:0,148,0:0:0:148,0:5281,0:-463.216,-44.5524,0,-463.216,-44.5524,-463.216	1/1:132:0,131,1:0:0:131,1:4647,36:-392.503,-39.4349,0,-389.565,-36.1377,-389.264	1/2:179:0,115,63:0:0:115,63:4116,2260:-508.204,-184.338,-149.72,-323.86,0,-304.895	1/2:102:0,62,40:0:0:62,40:2217,1432:-291.34,-117.136,-98.4725,-174.557,0,-162.516	1/1:124:0,124,0:0:0:124,0:4434,0:-385.85,-37.3277,0,-385.85,-37.3277,-385.85	1/2:201:0,124,77:0:0:124,77:4423,2760:-578.716,-225.434,-188.106,-353.637,0,-330.457	1/2:21:0,8,13:0:0:8,13:280,460:-59.5753,-37.822,-35.4137,-22.0959,0,-18.1825	1/1:184:0,184,0:0:0:184,0:6533,0:-551.883,-55.3895,0,-551.883,-55.3895,-551.883	1/2:49:0,21,27:0:0:21,27:756,968:-139.488,-78.9786,-72.657,-60.5337,0,-52.4059	1/1:29:0,29,0:0:0:29,0:1035,0:-86.6062,-8.72987,0,-86.6062,-8.72987,-86.6062	1/1:143:0,143,0:0:0:143,0:5093,0:-438.738,-43.0473,0,-438.738,-43.04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chr04	29416403	.	G	A	30033.3	PASS	AB=0.416165;ABP=287.001;AC=47;AF=0.25;AN=188;AO=1965;CIGAR=1X;DP=10588;DPB=10588;DPRA=0.968023;EPP=4269.95;EPPR=4489.71;GTI=3;LEN=1;MEANALT=1;MQM=59.5975;MQMR=59.8186;NS=94;NUMALT=1;ODDS=3.67857;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70141;QR=303219;RO=8623;RPL=0;RPP=4269.95;RPPR=4489.71;RPR=1965;RUN=1;SAF=0;SAP=4269.95;SAR=1965;SRF=0;SRP=18727.6;SRR=8623;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:28,23:28:974:23:828:-59.4916,0,-72.6182	0/0:151:151,0:151:5278:0:0:0,-45.4555,-475.16	0/0:185:185,0:185:6477:0:0:0,-55.6905,-583.022	0/0:233:233,0:233:8209:0:0:0,-70.14,-738.832	0/1:68:39,29:39:1387:29:1044:-73.7871,0,-104.658	0/1:44:30,14:30:1072:14:500:-32.0909,0,-83.5471	0/1:192:130,62:130:4572:62:2205:-140.916,0,-353.849	0/1:140:90,50:90:3190:50:1785:-118.787,0,-245.178	0/0:114:111,3:111:3867:3:104:0,-24.6146,-338.524	0/0:129:129,0:129:4561:0:0:0,-38.8329,-410.655	0/1:56:33,23:33:1169:23:828:-57.964,0,-88.6576	0/1:45:17,28:17:573:28:1004:-77.1011,0,-38.3413	0/0:70:70,0:70:2437:0:0:0,-21.0721,-219.584	0/0:61:61,0:61:2111:0:0:0,-18.3628,-190.258	0/0:59:59,0:59:2078:0:0:0,-17.7608,-187.29	0/1:49:23,26:23:789:26:936:-69.7914,0,-56.5736	0/1:60:23,37:23:792:37:1328:-101.704,0,-53.5324	0/0:48:48,0:48:1647:0:0:0,-14.4494,-148.511	0/1:38:24,14:24:856:14:500:-33.8863,0,-65.922	0/1:266:156,110:156:5478:110:3887:-269.856,0,-413.08	0/1:172:122,50:122:4247:50:1796:-110.117,0,-329.362	0/0:191:191,0:191:6707:0:0:0,-57.4967,-603.643	0/0:134:134,0:134:4726:0:0:0,-40.338,-425.503	0/0:164:156,8:156:5474:8:284:0,-23.4656,-466.888	0/0:132:132,0:132:4636:0:0:0,-39.736,-417.403	0/1:309:195,114:195:6886:114:4078:-273.054,0,-526.724	0/1:252:159,93:159:5561:93:3310:-222.229,0,-424.761	0/1:30:16,14:16:576:14:500:-36.3053,0,-43.1441	0/0:384:384,0:384:13577:0:0:0,-115.596,-1221.59	0/1:121:69,52:69:2441:52:1872:-132.328,0,-183.52	0/1:141:91,50:91:3192:50:1783:-118.284,0,-245.055	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:18:8,10:8:284:10:360:-26.5413,0,-20.4848	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:216:216,0:216:7553:0:0:0,-65.0225,-679.748	0/1:238:139,99:139:4920:99:3530:-246.225,0,-371.309	0/0:60:60,0:60:2082:0:0:0,-18.0618,-186.371	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:181:181,0:181:6361:0:0:0,-54.4864,-572.582	0/1:36:13,23:13:421:23:824:-63.6462,0,-27.3627	0/1:149:83,66:83:2921:66:2346:-166.545,0,-218.27	0/1:77:30,47:30:1050:47:1674:-127.737,0,-71.6295	0/0:47:47,0:47:1653:0:0:0,-14.1484,-149.056	0/0:150:150,0:150:5313:0:0:0,-45.1545,-478.252	0/0:201:201,0:201:7082:0:0:0,-60.507,-637.444	0/1:196:109,87:109:3814:87:3088:-219.101,0,-284.455	0/1:121:76,45:76:2663:45:1597:-107.567,0,-203.489	0/0:163:163,0:163:5805:0:0:0,-49.0679,-522.566	0/1:211:121,90:121:4271:90:3223:-226.547,0,-321.008	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/0:188:188,0:188:6668:0:0:0,-56.5936,-600.203	0/1:71:49,22:49:1755:22:788:-49.8579,0,-136.842	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:187:187,0:187:6567:0:0:0,-56.2926,-591.12	0/1:35:22,13:22:761:13:464:-31.5615,0,-58.2708	0/0:4:4,0:4:120:0:0:0,-1.20412,-11.0957	0/1:15:9,6:9:320:6:216:-15.2462,0,-24.6235	0/1:92:57,35:57:2018:35:1234:-83.6395,0,-154.197	0/0:113:113,0:113:3983:0:0:0,-34.0164,-358.663	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:144:81,63:81:2842:63:2252:-159.542,0,-212.638	0/1:187:102,85:102:3596:85:3035:-216.984,0,-267.554	0/0:91:90,1:90:3157:1:36:0,-23.7955,-280.755	0/0:101:101,0:101:3537:0:0:0,-30.404,-317.601	0/0:203:202,1:202:7115:1:36:0,-57.5108,-636.812	0/0:213:213,0:213:7493:0:0:0,-64.1194,-674.418	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.272	0/0:120:120,0:120:4217:0:0:0,-36.1236,-379.711	0/1:62:33,29:33:1152:29:1044:-75.6109,0,-85.3087	0/1:29:14,15:14:504:15:536:-39.8224,0,-36.9682	0/1:173:109,64:109:3827:64:2288:-154.074,0,-291.275	0/0:80:80,0:80:2840:0:0:0,-24.0824,-255.837	0/0:252:252,0:252:8956:0:0:0,-75.8596,-806.026	0/0:202:202,0:202:7125:0:0:0,-60.8081,-641.307	0/1:105:43,62:43:1475:62:2207:-166.887,0,-101.429	0/0:103:102,1:102:3583:1:36:0,-27.4078,-319.077	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:125:73,52:73:2554:52:1872:-131.113,0,-192.481	0/1:131:101,30:101:3516:30:1076:-57.7179,0,-277.216	0/0:314:313,1:313:11098:1:36:0,-90.9251,-995.12	0/0:118:117,1:117:4119:1:36:0,-31.9233,-367.3	0/0:60:60,0:60:2091:0:0:0,-18.0618,-188.458	0/1:95:48,47:48:1653:47:1692:-123.924,0,-120.454	0/1:150:82,68:82:2851:68:2422:-173.036,0,-211.673	0/0:40:40,0:40:1403:0:0:0,-12.0412,-126.566	0/0:65:65,0:65:2260:0:0:0,-19.5669,-203.663	0/0:56:56,0:56:1955:0:0:0,-16.8577,-176.222	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:79:37,42:37:1300:42:1492:-110.786,0,-93.5171	0/1:66:25,41:25:866:41:1453:-110.714,0,-58.3859	0/0:151:151,0:151:5294:0:0:0,-45.4555,-476.599	0/0:89:89,0:89:3127:0:0:0,-26.7917,-281.658
chr04	29473671	.	ACT	GCC,GCT	228332	PASS	AB=0.455296,0.542421;ABP=101.831,91.9934;AC=140,48;AF=0.744681,0.255319;AN=188;AO=7667,3105;CIGAR=1X1M1X,1X2M;DP=10804;DPB=10804.3;DPRA=116.161,1.16693;EPP=16651.7,6745.43;EPPR=7.35324;GTI=5;LEN=3,1;MEANALT=1.86022,2.28302;MQM=59.4714,59.9752;MQMR=60;NS=94;NUMALT=2;ODDS=0.72969;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=271170,110986;QR=72;RO=2;RPL=7667,3105;RPP=16651.7,6745.43;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=16651.7,6745.43;SAR=7667,3105;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:68:0,27,41:0:0:27,41:953,1472:-197.98,-120.434,-112.306,-77.9007,0,-65.5585	1/1:73:0,73,0:0:0:73,0:2604,0:-234.428,-21.9752,0,-234.428,-21.9752,-234.428	1/1:167:0,167,0:0:0:167,0:5922,0:-532.586,-50.272,0,-532.586,-50.272,-532.586	1/1:322:0,318,0:0:0:318,0:11268,0:-1013.53,-95.7275,0,-1013.53,-95.7275,-1013.53	1/2:121:0,54,67:0:0:54,67:1931,2391:-352.717,-195.277,-179.021,-157.797,0,-137.628	1/2:72:0,31,41:0:0:31,41:1111,1463:-210.142,-119.564,-110.232,-90.878,0,-78.5358	1/2:118:0,58,58:0:0:58,58:2038,2084:-335.96,-170.124,-152.665,-165.947,0,-148.487	1/2:226:0,101,125:0:0:101,125:3546,4472:-653.186,-365.02,-334.616,-288.52,0,-250.891	1/1:145:0,145,0:0:0:145,0:5108,0:-459.59,-43.6494,0,-459.59,-43.6494,-459.59	1/1:118:0,118,0:0:0:118,0:4190,0:-377.284,-35.5215,0,-377.284,-35.5215,-377.284	1/2:30:0,11,19:0:0:11,19:387,676:-86.9499,-55.4484,-52.1371,-31.8546,0,-26.135	1/2:70:0,34,36:0:0:34,36:1194,1284:-202.042,-105.02,-94.7851,-97.3757,0,-86.5387	1/1:86:0,86,0:0:0:86,0:2999,0:-269.936,-25.8886,0,-269.936,-25.8886,-269.936	1/1:38:0,38,0:0:0:38,0:1354,0:-122.138,-11.4391,0,-122.138,-11.4391,-122.138	1/1:57:0,57,0:0:0:57,0:2024,0:-182.342,-17.1587,0,-182.342,-17.1587,-182.342	1/2:46:0,22,24:0:0:22,24:746,855:-130.458,-70.0455,-63.4228,-60.7592,0,-53.5345	1/2:25:0,13,12:0:0:13,12:457,428:-72.4416,-35.2464,-31.3331,-37.5492,0,-33.9369	1/1:29:0,29,0:0:0:29,0:1041,0:-93.9157,-8.72987,0,-93.9157,-8.72987,-93.9157	1/2:15:0,7,8:0:0:7,8:252,288:-44.4211,-23.8592,-21.752,-20.9217,0,-18.5135	1/2:257:0,121,136:0:0:121,136:4290,4852:-745.304,-395.896,-359.471,-349.764,0,-308.824	1/2:232:0,101,130:0:0:101,130:3569,4636:-668.559,-378,-347.596,-290.643,0,-251.509	1/2:232:0,93,139:0:0:93,139:3316,4976:-676.386,-406.145,-378.15,-270.597,0,-228.754	1/1:184:0,183,0:0:0:183,0:6450,0:-580.225,-55.0885,0,-580.225,-55.0885,-580.225	1/1:93:0,87,6:0:0:87,6:3058,216:-274.926,-26.1896,0,-257.301,-8.20528,-255.495	1/1:88:0,88,0:0:0:88,0:3113,0:-280.114,-26.4906,0,-280.114,-26.4906,-280.114	1/2:438:0,219,219:0:0:219,219:7738,7809:-1266.93,-636.917,-570.991,-630.373,0,-564.447	1/2:302:0,143,159:0:0:143,159:5067,5674:-875.617,-462.916,-419.869,-413.056,0,-365.192	1/2:30:0,20,10:0:0:20,10:712,360:-87.761,-29.734,-23.7134,-58.3855,0,-55.3752	1/1:398:0,397,0:0:0:397,0:14064,0:-1265.22,-119.509,0,-1265.22,-119.509,-1265.22	1/2:195:1,89,105:1:36:89,105:3136,3761:-558.625,-303.76,-279.906,-252.223,0,-223.553	1/2:170:0,83,87:0:0:83,87:2937,3103:-492.433,-253.308,-228.322,-239.481,0,-213.291	1/2:7:0,1,6:0:0:1,6:36,216:-20.9217,-17.9843,-17.6833,-3.29724,0,-1.49106	1/2:6:0,2,4:0:0:2,4:64,140:-16.8866,-11.7405,-11.1384,-5.47604,0,-4.27192	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/1:11:0,11,0:0:0:11,0:394,0:-35.8006,-3.31133,0,-35.8006,-3.31133,-35.8006	1/1:116:0,116,0:0:0:116,0:4117,0:-370.708,-34.9195,0,-370.708,-34.9195,-370.708	1/2:228:0,90,137:0:0:90,137:3167,4899:-657.089,-399.46,-372.367,-257.624,0,-216.382	1/1:22:0,22,0:0:0:22,0:768,0:-69.3944,-6.62266,0,-69.3944,-6.62266,-69.3944	1/1:3:0,3,0:0:0:3,0:100,0:-9.32986,-0.90309,0,-9.32986,-0.90309,-9.32986	1/1:175:0,175,0:0:0:175,0:6174,0:-555.59,-52.6803,0,-555.59,-52.6803,-555.59	1/2:11:0,6,5:0:0:6,5:216,176:-32.3087,-14.6799,-12.8737,-17.9843,0,-16.4792	1/2:189:0,95,93:0:0:95,93:3363,3305:-543.137,-269.314,-240.716,-273.817,0,-245.822	1/2:50:0,19,31:0:0:19,31:678,1116:-146.691,-91.4198,-85.7002,-55.6292,0,-46.2972	1/1:47:0,46,0:0:0:46,0:1593,0:-143.419,-13.8474,0,-143.419,-13.8474,-143.419	1/1:164:0,164,0:0:0:164,0:5836,0:-525.274,-49.3689,0,-525.274,-49.3689,-525.274	1/1:168:0,168,0:0:0:168,0:5933,0:-533.933,-50.573,0,-533.933,-50.573,-533.933	1/2:290:0,135,155:0:0:135,155:4775,5554:-842.125,-453.316,-412.677,-389.165,0,-342.505	1/2:145:0,70,75:0:0:70,75:2475,2692:-420.968,-219.947,-198.875,-201.377,0,-178.8	1/2:145:0,72,72:0:0:72,72:2560,2576:-418.529,-210.056,-188.381,-208.47,0,-186.796	1/2:137:0,55,81:0:0:55,81:1923,2896:-392.688,-236.281,-219.724,-156.546,0,-132.163	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:171:0,171,0:0:0:171,0:6081,0:-547.154,-51.4761,0,-547.154,-51.4761,-547.154	1/2:80:0,43,36:0:0:43,36:1522,1287:-228.908,-104.936,-91.9917,-123.968,0,-113.131	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:198:0,197,0:0:0:197,0:6969,0:-626.744,-59.3029,0,-626.744,-59.3029,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chr04	29473688	.	G	C	56027	PASS	AB=0.304359;ABP=5082.26;AC=94;AF=0.5;AN=188;AO=4650;CIGAR=1X;DP=15278;DPB=15278;DPRA=0;EPP=10100.4;EPPR=23081.4;GTI=0;LEN=1;MEANALT=1;MQM=59.9602;MQMR=59.6266;NS=94;NUMALT=1;ODDS=44.8083;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166488;QR=380797;RO=10628;RPL=0;RPP=10100.4;RPPR=23081.4;RPR=4650;RUN=1;SAF=4650;SAP=10100.4;SAR=0;SRF=0;SRP=23081.4;SRR=10628;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:76:69,7:69:2476:7:252:-0.150681,0,-200.16	0/1:135:70,65:70:2512:65:2328:-169.141,0,-185.51	0/1:225:164,61:164:5872:61:2180:-128.734,0,-460.469	0/1:426:315,111:315:11292:111:3972:-229.429,0,-887.462	0/1:165:116,49:116:4152:49:1748:-107.934,0,-324.188	0/1:110:72,38:72:2584:38:1360:-89.5873,0,-199.663	0/1:208:117,91:117:4196:91:3240:-229.207,0,-313.867	0/1:272:222,50:222:7944:50:1792:-79.6823,0,-632.729	0/1:200:141,59:141:5044:59:2108:-129.783,0,-393.627	0/1:161:119,42:119:4264:42:1500:-86.8284,0,-335.468	0/1:49:27,22:27:964:22:788:-56.4943,0,-72.3264	0/1:97:67,30:67:2408:30:1076:-67.952,0,-187.618	0/1:128:85,43:85:3040:43:1548:-101.08,0,-235.078	0/1:72:38,34:38:1368:34:1220:-88.4326,0,-101.69	0/1:88:56,32:56:2000:32:1148:-77.1383,0,-153.694	0/1:82:46,36:46:1644:36:1284:-91.178,0,-123.438	0/1:53:25,28:25:900:28:996:-73.9994,0,-65.3664	0/1:63:27,36:27:968:36:1296:-97.9781,0,-68.3816	0/1:34:15,19:15:540:19:684:-51.6553,0,-38.7015	0/1:312:250,62:250:8972:62:2216:-105.783,0,-713.435	0/1:307:232,75:232:8312:75:2684:-149.388,0,-655.164	0/1:321:230,91:230:8237:91:3248:-195.91,0,-644.644	0/1:250:179,71:179:6416:71:2548:-154.313,0,-502.065	0/1:126:92,34:92:3297:34:1220:-72.1761,0,-258.755	0/1:126:86,40:86:3080:40:1432:-91.2478,0,-239.194	0/1:586:428,158:428:15340:158:5640:-331.308,0,-1203.38	0/1:389:294,95:294:10552:95:3416:-190.551,0,-832.378	0/1:43:29,14:29:1040:14:504:-32.7538,0,-80.9701	0/1:527:392,135:392:14009:135:4836:-276.749,0,-1101.81	0/1:256:195,61:195:6977:61:2192:-120.475,0,-550.774	0/1:213:168,45:168:6024:45:1600:-80.1708,0,-477.989	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7674	0/1:243:116,127:116:4160:127:4560:-337.41,0,-301.423	0/1:323:223,100:223:7985:100:3592:-226.251,0,-621.188	0/1:62:21,41:21:752:41:1476:-114.471,0,-49.2974	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:269:174,95:174:6256:95:3408:-225.956,0,-481.981	0/1:25:10,15:10:360:15:540:-41.4099,0,-25.2186	0/1:259:187,72:187:6700:72:2580:-154.482,0,-524.99	0/1:64:49,15:49:1764:15:540:-29.6706,0,-139.778	0/1:69:45,24:45:1612:24:864:-57.3115,0,-124.544	0/1:222:160,62:160:5748:62:2212:-132.516,0,-450.519	0/1:214:164,50:164:5872:50:1792:-97.1421,0,-463.978	0/1:391:287,104:287:10285:104:3720:-217.296,0,-807.747	0/1:212:146,66:146:5232:66:2372:-149.913,0,-406.026	0/1:186:144,42:144:5148:42:1504:-79.663,0,-407.022	0/1:226:133,93:133:4748:93:3340:-232.783,0,-359.413	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:238:169,69:169:6048:69:2476:-151.448,0,-472.492	0/1:110:78,32:78:2796:32:1144:-70.1553,0,-218.767	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:247:194,53:194:6952:53:1896:-96.5637,0,-551.193	0/1:80:66,14:66:2352:14:504:-21.6157,0,-187.839	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.92504	0/1:23:13,10:13:464:10:352:-25.0945,0,-35.1656	0/1:147:115,32:115:4132:32:1148:-59.3784,0,-327.22	0/1:143:64,79:64:2284:79:2828:-211.709,0,-162.747	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:351:267,84:267:9546:84:3004:-164.929,0,-753.407	0/1:387:264,123:264:9457:123:4404:-280.032,0,-734.575	0/1:113:72,41:72:2584:41:1476:-99.118,0,-198.706	0/1:166:131,35:131:4684:35:1248:-62.6539,0,-371.715	0/1:330:262,68:262:9369:68:2424:-119.075,0,-743.419	0/1:240:157,83:157:5644:83:2984:-196.544,0,-435.781	0/1:25:14,11:14:504:11:388:-27.7316,0,-38.1723	0/1:121:69,52:69:2472:52:1872:-132.333,0,-186.304	0/1:106:41,65:41:1460:65:2336:-178.59,0,-99.7705	0/1:41:24,17:24:856:17:604:-42.3484,0,-65.0189	0/1:230:169,61:169:6064:61:2188:-127.948,0,-476.532	0/1:131:102,29:102:3652:29:1044:-54.8399,0,-289.23	0/1:287:200,87:200:7169:87:3096:-192.469,0,-558.089	0/1:299:242,57:242:8665:57:2028:-92.7848,0,-689.709	0/1:240:179,61:179:6420:61:2188:-124.938,0,-505.563	0/1:168:126,42:126:4524:42:1500:-84.7206,0,-356.446	0/1:10:5,5:5:176:5:176:-13.1747,0,-13.1691	0/1:203:152,51:152:5444:51:1824:-103.332,0,-428.732	0/1:221:159,62:159:5704:62:2220:-133.537,0,-446.913	0/1:403:253,150:253:9080:150:5372:-362.293,0,-694.874	0/1:102:43,59:43:1544:59:2116:-160.003,0,-108.546	0/1:65:38,27:38:1349:27:968:-67.8701,0,-102.128	0/1:97:64,33:64:2304:33:1184:-77.6666,0,-178.421	0/1:191:109,82:109:3904:82:2928:-206.257,0,-294.057	0/1:47:16,31:16:576:31:1108:-85.8826,0,-38.0266	0/1:106:59,47:59:2108:47:1688:-120.298,0,-157.947	0/1:94:59,35:59:2112:35:1256:-85.0476,0,-162.017	0/1:21:4,17:4:144:17:612:-49.0909,0,-6.99199	0/1:80:38,42:38:1352:42:1496:-110.851,0,-97.8794	0/1:96:69,27:69:2476:27:952:-57.095,0,-194.181	0/1:260:202,58:202:7256:58:2068:-108.12,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chr04	29489600	.	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chr04	29562354	.	A	G	36671.6	PASS	AB=0.551344;ABP=98.4467;AC=47;AF=0.25;AN=188;AO=2310;CIGAR=1X;DP=8379;DPB=8379;DPRA=1.04278;EPP=5019.11;EPPR=13181.7;GTI=1;LEN=1;MEANALT=1;MQM=40.2078;MQMR=59.506;NS=94;NUMALT=1;ODDS=1.49116;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82475;QR=215514;RO=6069;RPL=0;RPP=5019.11;RPPR=13181.7;RPR=2310;RUN=1;SAF=2310;SAP=5019.11;SAR=0;SRF=6069;SRP=13181.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:12,34:12:432:34:1201:-87.9256,0,-25.3738	0/0:67:67,0:67:2381:0:0:0,-20.169,-213.584	0/0:184:184,0:184:6503:0:0:0,-55.3895,-584.324	0/0:229:229,0:229:8133:0:0:0,-68.9359,-731.818	0/1:88:38,50:38:1349:50:1755:-124.15,0,-95.2049	0/1:54:24,30:24:856:30:1080:-75.3083,0,-61.0879	0/1:109:29,80:29:1044:80:2856:-214.213,0,-61.4495	0/1:152:61,91:61:2135:91:3181:-220.806,0,-145.679	0/0:80:79,1:79:2821:1:36:0,-20.6948,-250.575	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2904	0/1:52:19,33:19:684:33:1184:-86.6821,0,-46.2368	0/1:107:59,48:59:2075:48:1720:-113.518,0,-154.749	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.586	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.747	0/0:70:70,0:70:2505:0:0:0,-21.0721,-225.689	0/1:62:33,29:33:1180:29:1044:-71.7229,0,-87.8248	0/1:24:13,11:13:453:11:392:-25.5582,0,-33.8749	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7631	0/1:30:17,13:17:604:13:468:-30.8624,0,-45.6312	0/1:254:100,154:100:3580:154:5532:-406.478,0,-245.862	0/1:162:48,114:48:1709:114:4035:-297.276,0,-105.248	0/1:138:34,104:34:1216:104:3683:-284.084,0,-67.8833	0/0:130:130,0:130:4559:0:0:0,-39.1339,-410.197	0/1:35:30,5:30:1065:5:180:-4.69378,0,-85.6155	0/0:88:86,2:86:3032:2:72:0,-19.9271,-266.481	0/0:234:234,0:234:8253:0:0:0,-70.441,-742.663	0/1:227:128,99:128:4547:99:3545:-234.161,0,-340.945	0/1:39:19,20:19:680:20:720:-50.3485,0,-49.789	0/0:217:217,0:217:7723:0:0:0,-65.3235,-695.041	0/1:159:69,90:69:2427:90:3209:-227.072,0,-170.78	0/1:105:37,68:37:1309:68:2410:-177.957,0,-86.4959	0/1:17:5,12:5:180:12:432:-32.5364,0,-11.4262	0/1:19:6,13:6:216:13:464:-34.5954,0,-14.0709	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:13:6,7:6:216:7:252:-17.7672,0,-15.8771	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3187	0/0:193:193,0:193:6860:0:0:0,-58.0988,-617.459	0/1:124:43,81:43:1495:81:2893:-211.846,0,-97.4885	0/0:35:35,0:35:1218:0:0:0,-10.536,-109.877	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:145:145,0:145:5140:0:0:0,-43.6493,-462.576	0/1:33:19,14:19:654:14:504:-33.8774,0,-49.2436	0/1:150:66,84:66:2326:84:3001:-214.016,0,-163.987	0/1:44:26,18:26:936:18:640:-42.588,0,-71.3141	0/0:51:51,0:51:1832:0:0:0,-15.3525,-164.666	0/0:104:104,0:104:3709:0:0:0,-31.3071,-333.934	0/0:156:156,0:156:5543:0:0:0,-46.9607,-498.161	0/1:110:67,43:67:2393:43:1540:-101.544,0,-182.508	0/1:70:37,33:37:1302:33:1188:-83.0809,0,-96.2708	0/1:117:49,68:49:1745:68:2436:-177.268,0,-122.105	0/1:95:36,59:36:1281:59:2116:-158.188,0,-86.9048	0/1:6:2,4:2:72:4:140:-10.8355,0,-5.0257	0/0:111:111,0:111:3973:0:0:0,-33.4143,-357.74	0/1:78:33,45:33:1188:45:1620:-120.056,0,-83.7483	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8636	0/0:119:119,0:119:4246:0:0:0,-35.8226,-381.966	0/1:72:31,41:31:1104:41:1476:-107.742,0,-77.99	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9314	0/1:25:9,16:9:309:16:576:-43.7177,0,-20.615	0/1:92:30,62:30:1072:62:2212:-162.984,0,-69.0977	0/0:88:88,0:88:3130:0:0:0,-26.4906,-281.894	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1704	0/1:173:86,87:86:3050:87:3109:-220.454,0,-222.153	0/1:144:74,70:74:2622:70:2520:-174.423,0,-192.253	0/0:27:26,1:26:932:1:36:0,-4.67332,-80.7362	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:159:158,1:158:5561:1:36:0,-44.3611,-497.096	0/0:137:136,1:136:4801:1:36:0,-37.7384,-428.137	0/0:48:48,0:48:1694:0:0:0,-14.4494,-152.696	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.225	0/1:34:17,17:17:597:17:612:-44.2213,0,-43.8178	0/1:24:13,11:13:468:11:396:-27.8023,0,-35.2303	0/1:150:62,88:62:2213:88:3141:-217.815,0,-153.309	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.052	0/0:103:103,0:103:3677:0:0:0,-31.0061,-330.826	0/0:176:176,0:176:6260:0:0:0,-52.9813,-563.202	0/1:130:70,60:70:2493:60:2145:-139.677,0,-185.43	0/0:94:90,4:90:3209:4:144:0,-15.7627,-276.444	0/1:12:8,4:8:273:4:129:-7.22999,0,-21.2878	0/1:126:67,59:67:2362:59:2109:-141.385,0,-174.706	0/1:148:77,71:77:2760:71:2533:-165.144,0,-203.759	0/0:146:144,2:144:5138:2:72:0,-37.2952,-455.887	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.426	0/0:94:94,0:94:3349:0:0:0,-28.2968,-301.602	0/1:50:24,26:24:834:26:932:-66.9074,0,-60.317	0/1:131:69,62:69:2450:62:2224:-152.157,0,-181.273	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7626	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.707	0/0:76:76,0:76:2691:0:0:0,-22.8783,-242.413	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.22	0/1:81:50,31:50:1788:31:1108:-70.6753,0,-136.029	0/1:57:18,39:18:629:39:1400:-104.795,0,-39.7751	0/0:91:91,0:91:3193:0:0:0,-27.3937,-287.56	0/0:125:125,0:125:4420:0:0:0,-37.6287,-397.922
chr04	29562375	.	G	T	37267.2	PASS	AB=0.553377;ABP=105.24;AC=47;AF=0.25;AN=188;AO=2299;CIGAR=1X;DP=8309;DPB=8309;DPRA=1.09159;EPP=4891.54;EPPR=12714.8;GTI=2;LEN=1;MEANALT=1.01818;MQM=40.1879;MQMR=59.5698;NS=94;NUMALT=1;ODDS=0.0931449;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82342;QR=215086;RO=6009;RPL=11;RPP=4900.14;RPPR=12714.8;RPR=2288;RUN=1;SAF=2298;SAP=4986.54;SAR=1;SRF=6009;SRP=13051.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:12,35:12:432:35:1260:-92.1514,0,-25.0728	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.344	0/0:179:179,0:179:6420:0:0:0,-53.8844,-577.662	0/0:228:228,0:228:8147:0:0:0,-68.6348,-733.079	0/1:89:38,51:38:1368:51:1832:-129.543,0,-96.6164	0/1:55:25,30:25:896:30:1080:-75.0073,0,-64.3861	0/1:106:29,77:29:1040:77:2768:-207.008,0,-61.9986	0/1:146:57,89:57:2025:89:3165:-221.017,0,-137.862	0/0:81:80,1:80:2872:1:36:0,-20.9958,-255.013	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.286	0/1:51:19,32:19:680:32:1152:-84.3251,0,-46.1766	0/1:105:58,47:58:2080:47:1688:-111.371,0,-155.824	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.694	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.742	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.568	0/1:60:31,29:31:1107:29:1044:-72.325,0,-81.8656	0/1:24:13,11:13:468:11:396:-25.8172,0,-35.2349	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.4769	0/1:30:17,13:17:612:13:468:-30.8624,0,-46.354	0/1:255:101,154:101:3594:154:5536:-406.133,0,-246.884	0/1:160:47,113:47:1669:113:4040:-296.982,0,-102.26	0/1:138:33,105:33:1184:105:3752:-289.973,0,-64.7662	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.496	0/1:33:29,4:29:1044:4:144:-2.18321,0,-84.3326	0/0:89:87,2:87:3096:2:72:0,-20.2281,-272.238	0/0:230:230,0:230:8245:0:0:0,-69.2369,-741.94	0/1:230:132,98:132:4710:98:3520:-231.707,0,-354.695	0/1:39:19,20:19:680:20:720:-50.3485,0,-49.789	0/0:214:214,0:214:7643:0:0:0,-64.4204,-687.789	0/1:159:67,91:67:2404:91:3260:-230.187,0,-168.702	0/1:103:35,68:35:1260:68:2440:-179.884,0,-82.6948	0/1:17:5,12:5:180:12:432:-32.5364,0,-11.4262	0/1:19:6,13:6:216:13:468:-34.8844,0,-14.0709	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:13:6,7:6:216:7:252:-17.7672,0,-15.8771	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3187	0/0:189:189,0:189:6780:0:0:0,-56.8947,-610.259	0/1:121:42,79:42:1508:79:2817:-205.621,0,-99.569	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.704	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:146:146,0:146:5210:0:0:0,-43.9504,-468.95	0/1:33:19,14:19:684:14:504:-33.8774,0,-51.9563	0/1:146:62,84:62:2213:84:3016:-216.547,0,-155.1	0/1:42:26,16:26:936:16:568:-36.794,0,-71.9162	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.926	0/0:104:104,0:104:3717:0:0:0,-31.3071,-334.652	0/0:156:156,0:156:5576:0:0:0,-46.9607,-501.276	0/1:112:69,43:69:2453:43:1540:-100.682,0,-187.304	0/1:72:38,34:38:1368:34:1216:-84.4682,0,-101.612	0/1:118:49,69:49:1760:69:2467:-179.657,0,-123.153	0/1:95:36,59:36:1296:59:2124:-158.655,0,-88.2575	0/1:6:2,4:2:68:4:140:-10.8355,0,-4.64668	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.731	0/1:77:34,43:34:1224:43:1548:-113.992,0,-87.2877	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5024	0/0:117:117,0:117:4155:0:0:0,-35.2205,-373.914	0/1:73:31,42:31:1104:42:1508:-110.283,0,-77.6862	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4111	0/1:25:9,16:9:320:16:572:-43.4059,0,-21.6166	0/1:91:30,61:30:1080:61:2180:-160.397,0,-70.1195	0/0:88:88,0:88:3153:0:0:0,-26.4906,-283.964	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1704	0/1:170:87,83:87:3101:83:2965:-209.247,0,-227.644	0/1:142:73,69:73:2605:69:2464:-170.492,0,-191.302	0/0:26:25,1:25:877:1:36:0,-4.37229,-75.7825	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:159:158,1:158:5653:1:36:0,-44.3611,-505.37	0/0:138:137,1:137:4894:1:36:0,-38.0394,-436.498	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.463	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.225	0/1:32:16,16:16:572:16:568:-40.9835,0,-42.1786	0/1:23:13,10:13:468:10:360:-24.9509,0,-35.5313	0/1:145:58,87:58:2084:87:3120:-217.324,0,-144.116	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.111	0/0:102:102,0:102:3672:0:0:0,-30.7051,-330.289	0/0:175:174,1:174:6206:1:36:0,-49.7775,-555.603	0/1:130:68,62:68:2429:62:2223:-145.856,0,-179.668	0/0:93:89,4:89:3188:4:140:0,-15.7252,-274.83	0/1:12:8,4:8:284:4:144:-8.3515,0,-22.291	0/1:125:66,59:66:2361:59:2098:-140.929,0,-175.099	0/1:145:69,76:69:2465:76:2701:-181.849,0,-178.164	0/0:145:143,2:143:5125:2:72:0,-36.9942,-454.717	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.366	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.316	0/1:48:23,25:23:828:25:900:-64.7116,0,-60.3901	0/1:131:69,62:69:2480:62:2211:-151.38,0,-184.011	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1636	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.75	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.747	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.58	0/1:80:48,32:48:1728:32:1139:-73.0451,0,-131.665	0/1:58:20,38:20:720:38:1368:-101.565,0,-47.6681	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.475	0/0:122:122,0:122:4373:0:0:0,-36.7257,-393.695
chr04	29646119	.	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chr04	29687979	.	G	A	33254.8	PASS	AB=0.525986;ABP=24.5661;AC=46;AF=0.244681;AN=188;AO=1949;CIGAR=1X;DP=7379;DPB=7379;DPRA=1.20207;EPP=4235.21;EPPR=11789.8;GTI=2;LEN=1;MEANALT=1.01961;MQM=59.9236;MQMR=59.9818;NS=94;NUMALT=1;ODDS=0.0569533;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69850;QR=194291;RO=5428;RPL=1949;RPP=4235.21;RPPR=11789.8;RPR=0;RUN=1;SAF=0;SAP=4235.21;SAR=1949;SRF=0;SRP=11789.8;SRR=5428;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:18,13:18:648:13:460:-32.2006,0,-49.32	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:127:127,0:127:4532:0:0:0,-38.2308,-408.049	0/1:51:17,34:17:612:34:1214:-94.2137,0,-40.0609	0/1:72:35,37:35:1252:37:1328:-98.1481,0,-91.3109	0/1:100:59,41:59:2101:41:1472:-102.659,0,-159.255	0/1:109:50,59:50:1792:59:2120:-158.256,0,-128.75	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.471	0/0:107:107,0:107:3829:0:0:0,-32.2102,-344.805	0/1:52:20,32:20:716:32:1146:-87.7953,0,-49.1142	0/1:69:36,33:36:1283:33:1188:-86.4575,0,-95.0016	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/0:84:84,0:84:3000:0:0:0,-25.2865,-270.232	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:57:26,31:26:932:31:1116:-83.593,0,-67.0402	0/1:99:50,49:50:1788:49:1760:-128.881,0,-131.401	0/0:91:91,0:91:3234:0:0:0,-27.3937,-291.282	0/1:47:27,20:27:963:20:716:-50.6193,0,-72.8375	0/1:129:60,69:60:2156:69:2468:-183.541,0,-155.474	0/1:134:55,79:55:1964:79:2832:-214.78,0,-136.697	0/1:70:18,52:18:644:52:1865:-147.048,0,-37.2185	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:76:75,1:75:2684:1:36:0,-19.28,-238.207	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:169:168,0:168:6024:0:0:0,-50.573,-541.902	0/1:113:61,52:61:2192:52:1845:-132.182,0,-163.529	0/1:38:12,26:12:432:26:936:-73.1203,0,-27.7821	0/0:185:185,0:185:6624:0:0:0,-55.6905,-596.239	0/1:177:76,101:76:2724:101:3624:-273.073,0,-192.121	0/1:120:54,66:54:1940:66:2364:-176.895,0,-138.753	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:145:145,0:145:5188:0:0:0,-43.6493,-467.06	0/1:163:92,71:92:3288:71:2537:-179.506,0,-247.072	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:109:106,3:106:3800:3:108:0,-22.7371,-332.094	0/1:22:6,16:6:212:16:576:-45.5523,0,-12.8021	0/1:104:48,56:48:1720:56:2004:-149.326,0,-123.778	0/1:76:38,38:38:1368:38:1364:-100.182,0,-100.543	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:120:120,0:120:4292:0:0:0,-36.1236,-386.45	0/1:128:63,65:63:2256:65:2332:-171.605,0,-164.771	0/1:68:33,35:33:1169:35:1252:-92.515,0,-85.0429	0/1:117:63,54:63:2244:54:1940:-139.656,0,-166.812	0/1:125:60,65:60:2160:65:2328:-172.151,0,-157.037	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:38:17,21:17:612:21:752:-56.5671,0,-43.9743	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:47:21,26:21:756:26:928:-69.6035,0,-54.2188	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:93:42,51:42:1496:51:1828:-136.801,0,-106.939	0/0:126:124,2:124:4427:2:72:0,-31.0931,-391.766	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:142:76,66:76:2720:66:2360:-169.908,0,-202.297	0/1:183:93,89:93:3332:89:3192:-232.356,0,-244.95	0/0:73:69,4:69:2476:4:140:0,-9.03061,-210.149	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:169:169,0:169:6052:0:0:0,-50.8741,-544.783	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.057	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:89:41,48:41:1468:48:1720:-128.294,0,-105.624	0/1:25:11,14:11:392:14:504:-38.1723,0,-28.0943	0/1:86:43,43:43:1544:43:1540:-112.996,0,-113.364	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:189:186,3:186:6664:3:108:0,-46.8195,-589.762	0/0:150:150,0:150:5388:0:0:0,-45.1545,-485.049	0/1:112:66,46:66:2364:46:1648:-114.893,0,-179.303	0/0:124:124,0:124:4432:0:0:0,-37.3277,-399.052	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:87:45,42:45:1612:42:1512:-110.185,0,-119.18	0/1:85:40,45:40:1436:45:1612:-119.783,0,-103.95	0/0:94:94,0:94:3360:0:0:0,-28.2968,-301.598	0/0:88:86,2:86:3080:2:72:0,-19.6539,-270.591	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:87:34,53:34:1212:53:1903:-145.358,0,-83.1967	0/1:150:60,90:60:2152:90:3224:-245.227,0,-148.793	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:69:69,0:69:2471:0:0:0,-20.7711,-222.643	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:68:34,34:34:1216:34:1224:-89.997,0,-89.2765	0/1:82:25,57:25:892:57:2040:-159.188,0,-55.9152	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688
chr04	29706227	.	C	T	283036	PASS	AB=0.487999;ABP=11.0369;AC=140;AF=0.752688;AN=186;AO=10592;CIGAR=1X;DP=13931;DPB=13931;DPRA=37.8451;EPP=23003.2;EPPR=7242.7;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.5802;MQMR=59.7085;NS=93;NUMALT=1;ODDS=5.79323;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=374843;QR=116284;RO=3338;RPL=6011;RPP=422.237;RPPR=3565.06;RPR=4581;RUN=1;SAF=6011;SAP=422.237;SAR=4581;SRF=498;SRP=3571.15;SRR=2840;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:23,25:23:805:25:888:-65.7849,0,-58.3181	1/1:143:0,143:0:0:143:5043:-453.841,-43.0473,0	1/1:167:2,165:2:63:165:5874:-522.792,-44.3098,0	1/1:277:1,276:1:36:276:9725:-871.555,-79.787,0	0/1:37:27,10:27:949:10:347:-20.4046,0,-74.5847	0/1:53:20,33:20:703:33:1184:-90.8042,0,-47.6389	0/1:144:47,97:47:1608:97:3453:-267.245,0,-101.652	0/1:216:134,82:134:4619:82:2895:-195.755,0,-350.825	1/1:206:8,198:8:288:198:7008:-604.394,-35.7448,0	1/1:152:0,152:0:0:152:5356:-481.67,-45.7566,0	0/1:74:38,36:38:1344:36:1279:-93.1353,0,-98.9787	0/1:172:83,89:83:2882:89:3162:-232.963,0,-207.835	1/1:169:0,169:0:0:169:6025:-542.303,-50.8741,0	1/1:119:0,119:0:0:119:4201:-377.41,-35.8226,0	1/1:158:0,158:0:0:158:5622:-506.099,-47.5627,0	0/1:109:51,58:51:1768:58:2071:-153.843,0,-126.588	0/1:111:41,70:41:1445:70:2494:-189.54,0,-96.9275	1/1:91:1,90:1:32:90:3223:-287.007,-24.2023,0	0/1:63:20,43:20:708:43:1535:-119.249,0,-45.0807	0/1:273:144,129:144:5022:129:4526:-325.304,0,-369.933	0/1:307:184,122:184:6345:122:4317:-296.204,0,-478.436	0/1:95:75,20:75:2610:20:695:-34.2555,0,-206.538	1/1:127:3,124:3:104:124:4411:-387.449,-28.54,0	1/1:148:7,141:7:252:141:4983:-425.315,-21.5235,0	1/1:136:0,136:0:0:136:4849:-436.119,-40.9401,0	1/1:362:3,359:3:93:359:12627:-1127.33,-100.355,0	0/1:347:192,155:192:6618:155:5523:-392.718,0,-491.246	0/1:75:37,38:37:1300:38:1368:-100.844,0,-94.7212	1/1:431:0,431:0:0:431:15129:-1360.37,-129.744,0	0/1:174:101,73:101:3530:73:2572:-179.211,0,-265.516	0/1:165:87,78:87:2973:78:2769:-199.779,0,-218.123	0/1:10:3,7:3:108:7:244:-19.2891,0,-7.06487	0/1:9:6,3:6:207:3:108:-7.3659,0,-16.2576	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:435:0,435:0:0:435:15359:-1380.01,-130.948,0	0/1:166:81,85:81:2786:85:2988:-219.041,0,-200.392	1/1:97:0,97:0:0:97:3430:-308.802,-29.1999,0	1/1:5:0,5:0:0:5:172:-15.8161,-1.50515,0	1/1:227:4,223:4:144:223:7925:-698.024,-55.0202,0	0/1:51:26,25:26:927:25:900:-65.8385,0,-68.3948	0/1:180:99,81:99:3411:81:2862:-202.566,0,-253.019	0/1:132:67,65:67:2382:65:2319:-169.065,0,-174.901	1/1:147:0,147:0:0:147:5192:-467.396,-44.2514,0	1/1:151:0,151:0:0:151:5308:-477.808,-45.4555,0	1/1:153:0,153:0:0:153:5456:-490.325,-46.0576,0	0/1:271:170,101:170:5943:101:3516:-234.894,0,-453.393	0/1:194:102,92:102:3554:92:3278:-236.617,0,-261.542	0/1:203:108,95:108:3715:95:3347:-240.327,0,-272.722	0/1:157:78,79:78:2660:79:2810:-205.821,0,-192.373	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:135:0,135:0:0:135:4785:-430.698,-40.6391,0	0/1:152:29,123:29:945:123:4355:-346.306,0,-39.586	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:227:0,227:0:0:227:8075:-726.724,-68.3338,0	0/1:95:48,47:48:1703:47:1668:-121.81,0,-124.957	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:17:11,6:11:380:6:212:-14.3073,0,-29.4145	0/1:91:51,40:51:1726:40:1423:-100.971,0,-128.218	1/1:230:3,227:3:108:227:8016:-710.584,-59.1617,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:428:230,198:230:8054:198:7020:-502.86,0,-595.777	0/1:268:152,116:152:5292:116:4133:-291.469,0,-395.706	1/1:87:6,81:6:216:81:2862:-237.751,-6.3991,0	1/1:112:0,112:0:0:112:3969:-357.308,-33.7154,0	1/1:201:3,198:3:108:198:6986:-618.72,-50.4319,0	1/1:203:2,201:2:72:201:7166:-637.211,-54.2724,0	1/1:50:0,50:0:0:50:1775:-160.01,-15.0515,0	1/1:76:0,76:0:0:76:2707:-243.856,-22.8783,0	0/1:139:42,97:42:1491:97:3417:-265.878,0,-92.6397	0/1:22:13,9:13:459:9:305:-21.1546,0,-35.0214	0/1:201:107,94:107:3778:94:3320:-237.618,0,-279.709	1/1:144:0,144:0:0:144:5133:-462.105,-43.3483,0	1/1:222:2,220:2:68:220:7784:-693.002,-60.3805,0	1/1:260:0,260:0:0:260:9178:-825.882,-78.2678,0	0/1:104:41,63:41:1446:63:2226:-168.508,0,-99.0231	1/1:166:3,163:3:108:163:5761:-508.143,-39.8958,0	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:188:93,95:93:3252:95:3359:-245.406,0,-236.282	0/1:158:76,82:76:2590:82:2894:-213.131,0,-185.779	1/1:241:1,240:1:36:240:8499:-761.143,-68.95,0	1/1:169:0,169:0:0:169:5997:-539.657,-50.8741,0	1/1:155:0,155:0:0:155:5505:-494.937,-46.6597,0	0/1:116:46,70:46:1652:70:2434:-183.887,0,-114.047	0/1:278:116,162:116:4137:162:5687:-428.11,0,-288.827	1/1:76:0,76:0:0:76:2657:-239.251,-22.8783,0	1/1:166:0,166:0:0:166:5865:-527.844,-49.971,0	1/1:169:0,169:0:0:169:5965:-536.811,-50.8741,0	1/1:67:0,67:0:0:67:2384:-214.814,-20.169,0	0/1:136:60,76:60:2123:76:2681:-200.217,0,-150.394	0/1:169:116,53:116:4106:53:1876:-118.242,0,-318.852	1/1:169:1,168:1:36:168:5903:-527.757,-47.2758,0	1/1:259:0,259:0:0:259:9237:-831.261,-77.9668,0
chr04	29710490	.	C	G,A	122881	PASS	AB=0.534903,0.464816;ABP=40.7545,41.3632;AC=138,46;AF=0.75,0.25;AN=184;AO=5597,1674;CIGAR=1X,1X;DP=7274;DPB=7274;DPRA=0,1.02349;EPP=12148.1,3620.7;EPPR=7.35324;GTI=3;LEN=1,1;MEANALT=1.56522,2;MQM=30.4225,51.9385;MQMR=51.5;NS=92;NUMALT=2;ODDS=0.339211;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=199580,59389;QR=72;RO=2;RPL=0,0;RPP=12156.7,3638.06;RPPR=7.35324;RPR=5597,1674;RUN=1,1;SAF=5596,1672;SAP=12148.1,3620.7;SAR=1,2;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:10:0,3,7:0:0:3,7:108,252:-27.772,-20.8582,-19.9551,-7.22465,0,-5.11744	1/1:116:0,116,0:0:0:116,0:4145,0:-303.312,-34.9195,0,-303.312,-34.9195,-303.312	1/1:65:0,65,0:0:0:65,0:2336,0:-170.99,-19.567,0,-170.99,-19.567,-170.99	1/1:267:0,267,0:0:0:267,0:9419,0:-688.247,-80.375,0,-688.247,-80.375,-688.247	1/2:21:0,11,10:0:0:11,10:396,360:-55.0774,-29.6876,-26.3762,-25.7163,0,-22.706	1/2:38:0,21,17:0:0:21,17:756,604:-97.9174,-49.4121,-43.0905,-48.8309,0,-43.7134	1/2:120:0,65,55:0:0:65,55:2309,1968:-309.463,-160.121,-140.554,-149.668,0,-133.111	1/2:136:0,56,80:0:0:56,80:2016,2822:-355.99,-225.849,-208.991,-130.456,0,-106.374	1/1:90:0,90,0:0:0:90,0:3224,0:-235.06,-27.0927,0,-235.06,-27.0927,-235.06	1/1:83:0,83,0:0:0:83,0:2946,0:-216.428,-24.9855,0,-216.428,-24.9855,-216.428	1/2:63:0,37,26:0:0:37,26:1332,936:-162.426,-76.4231,-65.285,-86.3342,0,-78.5074	1/2:72:0,42,30:0:0:42,30:1508,1057:-183.628,-85.8917,-73.2485,-98.0628,0,-89.0319	1/1:62:0,62,0:0:0:62,0:2232,0:-163.524,-18.6639,0,-163.524,-18.6639,-163.524	1/1:71:0,71,0:0:0:71,0:2537,0:-184.133,-21.3731,0,-184.133,-21.3731,-184.133	1/1:71:0,71,0:0:0:71,0:2541,0:-184.901,-21.3731,0,-184.901,-21.3731,-184.901	1/2:68:0,37,31:0:0:37,31:1324,1108:-175.111,-90.3926,-79.2545,-85.0433,0,-75.7114	1/2:73:0,37,36:0:0:37,36:1332,1292:-190.468,-104.837,-93.6987,-85.955,0,-75.1179	1/1:54:0,54,0:0:0:54,0:1944,0:-141.632,-16.2556,0,-141.632,-16.2556,-141.632	1/2:33:0,14,19:0:0:14,19:504,684:-88.4169,-56.0152,-51.8007,-32.7214,0,-27.0019	1/2:151:0,69,82:0:0:69,82:2476,2944:-399.26,-239.978,-219.206,-159.604,0,-134.919	1/2:155:0,82,73:0:0:82,73:2918,2571:-397.332,-208.589,-183.904,-189.065,0,-167.09	1/2:55:0,12,43:0:0:12,43:413,1506:-150.451,-122.122,-118.51,-28.6366,0,-15.6923	1/1:30:0,30,0:0:0:30,0:1076,0:-78.6052,-9.0309,0,-78.6052,-9.0309,-78.6052	1/2:65:0,59,6:0:0:59,6:2090,216:-152.754,-17.9563,-0.195499,-135.151,0,-133.345	1/1:16:0,16,0:0:0:16,0:572,0:-41.9858,-4.81648,0,-41.9858,-4.81648,-41.9858	1/1:210:0,210,0:0:0:210,0:7483,0:-567.647,-63.2163,0,-567.647,-63.2163,-567.647	1/2:148:0,78,70:0:0:78,70:2800,2508:-386.39,-203.658,-180.178,-183.059,0,-161.987	1/2:37:0,23,14:0:0:23,14:828,504:-94.7504,-41.191,-34.2673,-53.8923,0,-49.6778	1/1:238:0,238,0:0:0:238,0:8476,0:-642.422,-71.6451,0,-642.422,-71.6451,-642.422	1/2:156:0,88,68:0:0:88,68:3148,2364:-395.438,-191.718,-165.227,-204.042,0,-183.572	1/2:108:0,66,42:0:0:66,42:2316,1474:-268.447,-119.837,-99.9686,-148.934,0,-136.291	1/2:3:0,2,1:0:0:2,1:72,36:-8.32154,-3.29214,-2.69008,-5.37379,0,-5.07276	1/2:5:0,4,1:0:0:4,1:144,36:-12.4827,-3.29214,-2.08802,-9.53611,0,-9.23508	1/1:5:0,5,0:0:0:5,0:180,0:-13.3527,-1.50515,0,-13.3527,-1.50515,-13.3527	.:.:.:.:.:.:.:.	1/1:10:0,10,0:0:0:10,0:360,0:-26.1021,-3.0103,0,-26.1021,-3.0103,-26.1021	1/1:195:0,195,0:0:0:195,0:6982,0:-531.324,-58.7009,0,-531.324,-58.7009,-531.324	1/2:107:0,45,62:0:0:45,62:1604,2197:-281.931,-178.665,-165.119,-103.581,0,-84.9176	1/1:63:0,63,0:0:0:63,0:2256,0:-164.888,-18.9649,0,-164.888,-18.9649,-164.888	.:.:.:.:.:.:.:.	1/1:78:0,77,0:0:0:77,0:2764,0:-202.168,-23.1793,0,-202.168,-23.1793,-202.168	1/2:33:0,19,14:0:0:19,14:684,500:-85.3757,-41.0583,-35.3387,-44.6469,0,-40.4325	1/2:74:0,31,43:0:0:31,43:1108,1491:-192.928,-120.523,-111.191,-72.7195,0,-59.7753	1/2:63:0,33,30:0:0:33,30:1184,1069:-162.717,-87.0068,-77.0728,-76.0336,0,-67.0027	1/1:59:0,59,0:0:0:59,0:2116,0:-154.22,-17.7608,0,-154.22,-17.7608,-154.22	1/1:16:0,16,0:0:0:16,0:551,0:-42.2622,-4.81648,0,-42.2622,-4.81648,-42.2622	1/1:73:0,73,0:0:0:73,0:2571,0:-188.925,-21.9752,0,-188.925,-21.9752,-188.925	1/2:115:0,68,47:0:0:68,47:2414,1676:-292.947,-136.22,-115.75,-157.055,0,-142.906	1/2:62:0,29,33:0:0:29,33:1040,1169:-162.524,-95.1874,-86.4575,-67.6566,0,-57.7227	1/2:178:0,103,75:0:0:103,75:3685,2653:-452.128,-214.728,-183.722,-237.725,0,-215.147	1/2:163:0,99,64:0:0:99,64:3526,2288:-425.558,-185.871,-156.069,-240.022,0,-220.756	1/2:5:0,3,2:0:0:3,2:108,72:-13.1147,-6.22164,-5.31855,-7.22465,0,-6.62259	1/1:67:1,66,0:1:36:66,0:2349,0:-168.673,-16.648,0,-168.974,-19.868,-171.843	1/2:41:0,29,12:0:0:29,12:1044,428:-104.72,-35.1471,-26.4173,-69.9119,0,-66.2996	1/1:21:0,21,0:0:0:21,0:737,0:-54.3555,-6.32163,0,-54.3555,-6.32163,-54.3555	1/1:126:0,126,0:0:0:126,0:4501,0:-330.576,-37.9298,0,-330.576,-37.9298,-330.576	1/2:29:0,13,16:0:0:13,16:464,576:-76.9774,-47.1366,-43.2232,-30.1607,0,-25.3442	1/1:3:0,3,0:0:0:3,0:108,0:-8.55271,-0.90309,0,-8.55271,-0.90309,-8.55271	1/2:7:0,3,4:0:0:3,4:108,144:-18.3985,-11.2059,-10.3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chr04	29710535	.	AGTA	AGTGTG,AGTG	355606	PASS	AB=0.587939,0.406579;ABP=1044.49,1178.39;AC=96,90;AF=0.516129,0.483871;AN=186;AO=9174,6354;CIGAR=1M2I2M1X,3M1X;DP=15613;DPB=20223.8;DPRA=56.558,22.5942;EPP=19915.4,13783.2;EPPR=11.6962;GTI=6;LEN=6,1;MEANALT=2.77174,2.81111;MQM=41.4444,51.1997;MQMR=60;NS=93;NUMALT=2;ODDS=1.21413;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=0;PRO=0;QA=320442,225425;QR=142;RO=4;RPL=5484,1667;RPP=764.809,3119.9;RPPR=11.6962;RPR=3690,4687;RUN=1,1;SAF=5483,1665;SAP=763.112,3128.16;SAR=3691,4689;SRF=4;SRP=11.6962;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	2/2:47:0,3,44:0:0:3,44:108,1549:-139.133,-132.203,-131.299,-13.2453,-6.02067,0	1/2:131:0,115,16:0:0:115,16:4052,568:-308.629,-45.4496,-10.8312,-263.518,0,-258.702	1/2:150:0,62,86:0:0:62,86:2162,3058:-386.494,-245.985,-227.321,-140.572,0,-114.683	1/2:504:0,421,80:0:0:421,80:14663,2839:-1268.4,-228.051,-101.317,-1040.38,0,-1016.3	1/2:37:0,19,18:0:0:19,18:667,648:-100.918,-53.1871,-47.4676,-48.0677,0,-42.6491	1/2:59:0,21,38:0:0:21,38:753,1359:-159.355,-110.901,-104.58,-48.7674,0,-37.3283	1/2:257:0,119,138:0:0:119,138:4148,4916:-699.921,-400.105,-364.282,-300.149,0,-258.607	1/2:186:0,54,130:0:0:54,130:1908,4614:-496.104,-372.397,-356.142,-123.73,0,-84.5957	1/2:120:0,89,31:0:0:89,31:3119,1099:-291.247,-88.5595,-61.7678,-203.021,0,-193.689	1/2:242:0,157,85:0:0:157,85:5463,3029:-642.801,-244.206,-196.944,-398.935,0,-373.347	1/2:111:0,57,53:0:0:57,53:1999,1868:-292.284,-150.523,-133.365,-141.799,0,-125.844	1/2:174:0,39,135:0:0:39,135:1352,4728:-470.412,-382.089,-370.349,-88.6222,0,-47.9831	1/2:148:0,58,89:0:0:58,89:2013,3116:-381.487,-250.447,-232.987,-131.075,0,-104.283	1/2:148:0,117,31:0:0:117,31:4089,1095:-380.617,-88.8912,-53.6706,-292.068,0,-282.736	1/2:218:0,140,77:0:0:140,77:4911,2744:-577.302,-220.888,-178.744,-356.393,0,-333.214	1/2:150:0,68,82:0:0:68,82:2371,2895:-405.931,-235.039,-214.569,-171.222,0,-146.537	1/2:121:0,37,84:0:0:37,84:1290,3011:-328.369,-243.899,-232.761,-84.7783,0,-59.4918	1/2:78:0,53,25:0:0:53,25:1851,896:-192.698,-72.2958,-56.3412,-120.734,0,-113.208	1/2:55:0,14,41:0:0:14,41:493,1437:-148.817,-116.786,-112.572,-32.334,0,-19.9917	1/2:307:0,111,195:0:0:111,195:3921,6960:-845.004,-566.586,-533.171,-278.388,0,-219.687	1/2:327:0,128,197:0:0:128,197:4464,6991:-883.221,-567.479,-528.947,-315.781,0,-256.478	1/2:119:0,31,88:0:0:31,88:1060,3145:-336.846,-255.831,-246.499,-81.3479,0,-54.8573	1/2:158:0,117,40:0:0:117,40:4048,1413:-421.701,-113.625,-78.404,-308.06,0,-296.019	1/2:173:0,129,44:0:0:129,44:4492,1546:-454.319,-123.713,-84.8796,-330.944,0,-317.699	1/2:75:0,66,9:0:0:66,9:2301,303:-202.557,-24.7438,-4.87584,-178.147,0,-175.438	1/2:471:0,381,85:0:0:381,85:13138,3015:-1208.3,-243.077,-128.385,-965.252,0,-939.665	1/2:372:0,155,215:0:0:155,215:5447,7680:-1022.01,-623.965,-577.306,-398.122,0,-333.4	1/2:82:0,31,51:0:0:31,51:1103,1824:-224.585,-148.341,-139.009,-76.5692,0,-61.2167	1/2:481:0,396,81:0:0:396,81:13882,2883:-1245.15,-232.58,-113.372,-1012.66,0,-988.275	1/2:228:0,112,114:0:0:112,114:3946,4033:-595.883,-326.622,-292.907,-269.292,0,-234.975	1/2:229:0,115,113:0:0:115,113:4015,4043:-614.997,-326.748,-292.129,-288.341,0,-254.325	1/2:4:0,1,3:0:0:1,3:36,108:-11.4614,-9.16732,-8.86629,-2.60173,0,-1.69864	1/1:12:0,11,1:0:0:11,1:372,27:-30.8111,-3.31133,0,-28.6863,-0.913224,-28.3853	1/1:6:0,6,0:0:0:6,0:206,0:-15.6731,-1.80618,0,-15.6731,-1.80618,-15.6731	2/2:3:0,0,3:0:0:0,3:0,108:-10.0382,-10.0382,-10.0382,-0.90309,-0.90309,0	1/2:12:0,10,2:0:0:10,2:353,72:-28.7431,-6.15931,-3.14901,-22.9279,0,-22.3258	1/2:519:0,394,122:0:0:394,122:13768,4328:-1378.38,-349.156,-230.55,-1029.25,0,-992.527	1/2:189:0,78,111:0:0:78,111:2712,3950:-516.363,-320.955,-297.475,-195.738,0,-162.323	1/2:84:0,62,22:0:0:62,22:2165,792:-204.985,-64.1938,-45.53,-141.128,0,-134.506	.:.:.:.:.:.:.:.	1/2:271:0,181,89:0:0:181,89:6292,3117:-716.006,-250.797,-196.31,-465.266,0,-438.474	1/2:71:0,32,39:0:0:32,39:1122,1391:-193.653,-113.489,-103.856,-80.4964,0,-68.7563	1/2:200:0,89,110:0:0:89,110:3139,3919:-554.815,-316.759,-289.967,-238.051,0,-204.938	1/2:140:0,64,76:0:0:64,76:2244,2710:-382.039,-220.001,-200.735,-162.371,0,-139.492	1/2:172:0,117,54:0:0:117,54:4104,1908:-450.304,-153.949,-118.728,-296.403,0,-280.147	1/2:116:0,87,29:0:0:87,29:3051,1036:-323.134,-82.4669,-56.2773,-240.955,0,-232.225	1/2:87:0,71,15:0:0:71,15:2474,523:-203.172,-42.193,-20.8198,-161.021,0,-156.505	1/2:238:0,114,120:0:0:114,120:3957,4283:-633.564,-347.765,-313.447,-285.862,0,-249.739	1/2:179:0,68,111:0:0:68,111:2355,3938:-493.327,-320.175,-299.705,-173.482,0,-140.068	1/2:281:0,151,130:0:0:151,130:5315,4640:-748.61,-376.351,-330.895,-372.592,0,-333.458	1/2:257:0,130,126:0:0:130,126:4614,4478:-692.601,-363.595,-324.461,-329.094,0,-291.164	1/2:6:0,2,4:0:0:2,4:72,144:-16.6678,-12.0677,-11.4657,-4.91319,0,-3.70907	1/2:88:0,68,20:0:0:68,20:2372,716:-212.941,-57.5518,-37.0818,-155.726,0,-149.706	1/2:117:0,65,52:0:0:65,52:2281,1821:-318.082,-148.231,-128.664,-170.189,0,-154.536	1/1:23:0,21,2:0:0:21,2:748,72:-5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chr04	29710552	.	G	C	50897.5	PASS	AB=0.493737;ABP=4.58802;AC=46;AF=0.25;AN=184;AO=2308;CIGAR=1X;DP=10553;DPB=10553;DPRA=0.898331;EPP=5014.77;EPPR=17893.8;GTI=2;LEN=1;MEANALT=1.03846;MQM=57.0858;MQMR=53.6479;NS=92;NUMALT=1;ODDS=0.991186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82124;QR=292988;RO=8239;RPL=839;RPP=376.432;RPPR=17876.4;RPR=1469;RUN=1;SAF=839;SAP=376.432;SAR=1469;SRF=2;SRP=17876.4;SRR=8237;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:28,32:28:1004:32:1152:-85.9283,0,-72.2456	0/0:51:51,0:51:1824:0:0:0,-15.3525,-162.971	0/0:230:230,0:230:8149:0:0:0,-69.2369,-728.137	0/0:240:240,0:240:8567:0:0:0,-72.2472,-765.168	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.2897	0/1:38:18,20:18:648:20:708:-52.6059,0,-46.6858	0/1:193:75,117:75:2676:117:4160:-316.121,0,-181.16	0/1:116:81,34:81:2874:34:1220:-75.1324,0,-221.85	0/0:153:153,0:153:5449:0:0:0,-46.0576,-482.708	0/0:172:172,0:172:6112:0:0:0,-51.7772,-546.251	0/1:72:30,42:30:1038:42:1500:-113.482,0,-69.8659	0/1:151:99,52:99:3503:52:1853:-121.558,0,-267.977	0/0:179:179,0:179:6369:0:0:0,-53.8844,-569.5	0/0:85:85,0:85:3001:0:0:0,-25.5875,-269.163	0/0:150:150,0:150:5340:0:0:0,-45.1545,-475.084	0/1:84:62,22:62:2188:22:788:-45.9583,0,-170.747	0/1:76:54,22:54:1936:22:788:-48.3665,0,-150.429	0/0:50:50,0:50:1782:0:0:0,-15.0515,-159.535	0/1:35:24,11:24:860:11:396:-25.4467,0,-66.6552	0/1:237:55,182:55:1961:182:6502:-513.445,0,-104.68	0/1:173:108,65:108:3855:65:2328:-157.702,0,-292.393	0/1:106:25,81:25:900:81:2895:-228.114,0,-48.7001	0/0:132:132,0:132:4707:0:0:0,-39.736,-418.379	0/0:111:105,6:105:3763:6:216:0,-13.6238,-315.317	0/0:65:65,0:65:2324:0:0:0,-19.5669,-208.837	0/0:256:256,0:256:9135:0:0:0,-77.0637,-812.389	0/1:231:147,84:147:5229:84:2996:-200.332,0,-394.859	0/1:50:30,20:30:1050:20:693:-47.6306,0,-79.38	0/0:245:244,0:244:8705:0:0:0,-73.4513,-775.186	0/1:75:52,23:52:1852:23:824:-51.9061,0,-142.64	0/1:161:88,73:88:3130:73:2616:-186.602,0,-230.632	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.8363	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.59493	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.40459	0/0:324:324,0:324:11529:0:0:0,-97.5337,-1029.86	0/1:80:44,36:44:1580:36:1280:-91.4208,0,-118.056	0/0:62:62,0:62:2208:0:0:0,-18.6639,-197.507	.:.:.:.:.:.:.:.	0/0:199:198,1:198:7010:1:36:0,-56.3067,-622.02	0/1:40:25,15:25:888:15:531:-36.0807,0,-67.6816	0/1:126:79,47:79:2820:47:1692:-114.147,0,-214	0/1:106:59,47:59:2090:47:1684:-119.427,0,-153.936	0/0:116:116,0:116:4076:0:0:0,-34.9195,-360.609	0/0:101:101,0:101:3613:0:0:0,-30.404,-323.026	0/0:64:64,0:64:2262:0:0:0,-19.2659,-203.266	0/1:172:80,92:80:2852:92:3269:-241.942,0,-203.82	0/1:149:67,82:67:2370:82:2942:-219.983,0,-166.058	0/1:177:73,104:73:2599:104:3680:-277.2,0,-179.007	0/1:156:54,102:54:1924:102:3620:-278.235,0,-124.725	0/1:5:1,4:1:36:4:144:-11.7958,0,-2.06166	0/0:81:81,0:81:2896:0:0:0,-24.3834,-259.671	0/1:87:43,44:43:1539:44:1555:-113.981,0,-111.064	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.7665	0/0:149:148,0:148:5241:0:0:0,-44.5524,-469.716	0/1:60:21,39:21:739:39:1368:-105.189,0,-48.4265	0/0:5:4,0:4:136:0:0:0,-1.20412,-12.2632	0/1:20:9,11:9:320:11:396:-29.0741,0,-22.9954	0/1:68:40,28:40:1423:28:1000:-69.8453,0,-107.256	0/0:145:143,2:143:5061:2:72:0,-36.8126,-444.929	.:.:.:.:.:.:.:.	0/1:311:151,160:151:5398:160:5614:-410.823,0,-386.917	0/1:172:73,99:73:2595:99:3511:-263.032,0,-180.411	0/0:99:98,1:98:3490:1:36:0,-26.2037,-308.875	0/0:58:58,0:58:2022:0:0:0,-17.4597,-179.831	0/0:109:104,5:104:3711:5:180:0,-16.2602,-315.259	0/0:156:153,3:153:5421:3:108:0,-36.9047,-472.924	0/0:57:57,0:57:2003:0:0:0,-17.1587,-178.915	0/0:41:41,0:41:1447:0:0:0,-12.3422,-129.47	0/1:109:41,68:41:1468:68:2395:-182.362,0,-98.6142	0/1:33:23,10:23:824:10:352:-22.0505,0,-63.0873	0/1:69:50,19:50:1792:19:684:-41.1193,0,-139.898	0/0:173:173,0:173:6188:0:0:0,-52.0782,-552.439	0/0:133:133,0:133:4727:0:0:0,-40.037,-423.86	0/0:289:289,0:289:10282:0:0:0,-86.9977,-916.869	0/1:70:36,34:36:1292:34:1211:-88.2234,0,-94.4037	0/0:129:129,0:129:4573:0:0:0,-38.8329,-407.084	0/1:5:3,2:3:104:2:68:-4.95256,0,-8.14547	0/1:80:50,30:50:1787:30:1076:-73.0705,0,-135.851	0/1:105:67,38:67:2386:38:1349:-90.1001,0,-181.912	0/0:234:232,2:232:8208:2:72:0,-63.6173,-723.808	0/0:104:104,0:104:3714:0:0:0,-31.3071,-330.149	0/0:119:119,0:119:4254:0:0:0,-35.8226,-381.018	0/1:104:43,61:43:1531:61:2159:-162.723,0,-106.121	0/1:246:127,119:127:4512:119:4236:-306.427,0,-327.314	0/0:40:40,0:40:1423:0:0:0,-12.0412,-127.817	0/0:134:134,0:134:4764:0:0:0,-40.338,-426.044	0/0:113:113,0:113:4020:0:0:0,-34.0164,-359.414	0/0:46:46,0:46:1630:0:0:0,-13.8474,-145.618	0/1:66:50,16:50:1756:16:559:-30.7696,0,-136.146	0/1:134:45,89:45:1603:89:3178:-245.527,0,-103.123	0/0:281:281,0:281:10000:0:0:0,-84.5894,-891.978	0/0:220:219,0:219:7744:0:0:0,-65.9256,-689.721
chr04	29743531	.	TCGCCG	TAGCCA,TAGCCG	134413	PASS	AB=0.474576,0.518952;ABP=21.2286,13.1342;AC=141,47;AF=0.75,0.25;AN=188;AO=4727,1695;CIGAR=1M1X3M1X,1M1X4M;DP=6472;DPB=6471.67;DPRA=0,1.02114;EPP=10258.9,3666.3;EPPR=0;GTI=0;LEN=6,1;MEANALT=2.06383,2.46296;MQM=46.7112,59.1652;MQMR=0;NS=94;NUMALT=2;ODDS=2.1722;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=166758,60679;QR=0;RO=0;RPL=4727,1695;RPP=10267.6,3683.66;RPPR=0;RPR=0,0;RUN=1,1;SAF=1,2;SAP=10258.9,3666.3;SAR=4726,1693;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:48:0,17,30:0:0:17,30:610,1080:-136.983,-88.139,-83.0215,-48.8727,0,-39.8418	1/1:63:0,63,0:0:0:63,0:2241,0:-199.085,-18.9649,0,-199.085,-18.9649,-199.085	1/1:126:0,126,0:0:0:126,0:4435,0:-393.978,-37.9298,0,-393.978,-37.9298,-393.978	1/1:121:0,119,1:0:0:119,1:4174,36:-371.333,-35.8226,0,-368.396,-32.8646,-368.095	1/2:26:0,12,14:0:0:12,14:417,500:-74.6524,-41.0932,-37.4809,-33.9092,0,-29.6948	1/2:16:0,5,11:0:0:5,11:169,392:-45.9391,-32.3087,-30.8036,-13.973,0,-10.6616	1/2:60:0,28,31:0:0:28,31:964,1108:-167.907,-90.3478,-81.919,-77.6131,0,-68.2811	1/2:173:0,76,92:0:0:76,92:2675,3267:-481.469,-266.153,-243.275,-215.349,0,-187.654	1/1:60:0,59,0:0:0:59,0:2087,0:-186.134,-17.7608,0,-186.134,-17.7608,-186.134	1/1:58:0,58,0:0:0:58,0:2029,0:-180.717,-17.4597,0,-180.717,-17.4597,-180.717	1/2:81:0,41,39:0:0:41,39:1441,1391:-228.657,-113.339,-100.996,-115.313,0,-103.573	1/2:94:0,35,59:0:0:35,59:1237,2111:-272.249,-172.478,-161.942,-100.123,0,-82.3626	1/1:75:0,75,0:0:0:75,0:2657,0:-236.201,-22.5773,0,-236.201,-22.5773,-236.201	1/1:69:0,68,0:0:0:68,0:2418,0:-214.086,-20.47,0,-214.086,-20.47,-214.086	1/1:73:0,72,0:0:0:72,0:2535,0:-225.253,-21.6742,0,-225.253,-21.6742,-225.253	1/2:87:0,55,32:0:0:55,32:1930,1148:-248.042,-93.7489,-77.1922,-154.646,0,-145.013	1/2:36:0,17,18:0:0:17,18:602,639:-100.838,-52.0727,-46.9552,-48.8056,0,-43.3871	1/1:33:0,33,0:0:0:33,0:1163,0:-103.647,-9.93399,0,-103.647,-9.93399,-103.647	1/2:55:0,23,32:0:0:23,32:816,1139:-158.903,-93.1475,-86.2238,-66.1089,0,-56.4759	1/2:86:0,42,44:0:0:42,44:1503,1565:-248.378,-127.597,-114.953,-121.135,0,-107.889	1/2:80:0,47,33:0:0:47,33:1643,1178:-228.08,-96.1223,-81.9739,-132.309,0,-122.375	1/2:49:0,16,32:0:0:16,32:561,1152:-139.212,-93.9716,-89.1551,-45.2358,0,-35.6028	1/1:67:0,66,1:0:0:66,1:2317,36:-206.413,-19.868,0,-203.475,-16.5707,-203.174	1/2:25:0,21,4:0:0:21,4:748,144:-71.4118,-12.1095,-5.78787,-59.6601,0,-58.456	1/1:44:0,42,0:0:0:42,0:1472,0:-131.113,-12.6433,0,-131.113,-12.6433,-131.113	1/1:145:0,145,0:0:0:145,0:5129,0:-457.121,-43.6494,0,-457.121,-43.6494,-457.121	1/2:379:0,166,210:0:0:166,210:5891,7529:-1086.29,-613.815,-563.844,-472.541,0,-409.325	1/2:35:0,15,20:0:0:15,20:533,720:-101.746,-59.1082,-54.5927,-42.9921,0,-36.9715	1/1:121:0,121,0:0:0:121,0:4253,0:-378.025,-36.4246,0,-378.025,-36.4246,-378.025	1/2:79:0,47,31:0:0:47,31:1660,1110:-223.886,-90.2118,-76.0634,-133.671,0,-124.34	1/2:49:0,16,32:0:0:16,32:566,1140:-138.276,-92.927,-88.1106,-45.3789,0,-35.746	1/2:9:0,2,7:0:0:2,7:72,252:-26.7254,-20.893,-20.2909,-6.19031,0,-4.0831	1/2:11:0,4,7:0:0:4,7:144,252:-32.3982,-20.762,-19.5579,-11.9931,0,-9.88588	1/1:2:0,2,0:0:0:2,0:67,0:-6.33835,-0.60206,0,-6.33835,-0.60206,-6.33835	1/2:13:0,9,4:0:0:9,4:314,144:-37.4346,-12.1095,-9.40023,-25.6808,0,-24.4767	1/1:21:0,21,0:0:0:21,0:744,0:-66.5877,-6.32163,0,-66.5877,-6.32163,-66.5877	1/1:165:0,163,0:0:0:163,0:5783,0:-514.861,-49.0679,0,-514.861,-49.0679,-514.861	1/2:45:0,25,20:0:0:25,20:864,720:-128.001,-59.1082,-51.5824,-69.2438,0,-63.2232	1/1:72:0,71,0:0:0:71,0:2526,0:-225.401,-21.3731,0,-225.401,-21.3731,-225.401	1/1:3:0,3,0:0:0:3,0:108,0:-9.98707,-0.90309,0,-9.98707,-0.90309,-9.98707	1/1:66:0,63,2:0:0:63,2:2209,72:-196.753,-18.9649,0,-190.878,-13.0382,-190.276	1/2:46:0,24,21:0:0:24,21:850,756:-130.067,-61.7059,-54.4812,-68.4045,0,-62.0829	1/2:130:0,67,62:0:0:67,62:2366,2228:-371.502,-181.647,-161.478,-189.853,0,-171.189	1/2:57:0,22,35:0:0:22,35:782,1260:-165.741,-102.941,-96.3185,-63.1534,0,-52.6174	1/1:51:0,51,0:0:0:51,0:1744,0:-155.405,-15.3525,0,-155.405,-15.3525,-155.405	1/1:59:0,58,0:0:0:58,0:2059,0:-183.019,-17.4597,0,-183.019,-17.4597,-183.019	1/1:73:0,73,0:0:0:73,0:2572,0:-228.824,-21.9752,0,-228.824,-21.9752,-228.824	1/2:111:0,43,68:0:0:43,68:1473,2431:-315.946,-198.518,-185.574,-117.772,0,-97.3023	1/2:40:0,18,22:0:0:18,22:646,776:-114.546,-63.1523,-57.7337,-51.7441,0,-45.1215	1/2:106:0,44,62:0:0:44,62:1561,2232:-307.59,-182.395,-169.149,-125.549,0,-106.885	1/2:60:0,26,34:0:0:26,34:915,1220:-173.373,-99.5723,-91.7455,-74.1533,0,-63.9183	1/2:7:0,2,5:0:0:2,5:72,180:-20.8355,-15.018,-14.4159,-6.17488,0,-4.66973	1/1:64:0,60,0:0:0:60,0:2130,0:-190.085,-18.0618,0,-190.085,-18.0618,-190.085	1/2:36:0,15,21:0:0:15,21:531,756:-104.695,-62.0171,-57.5017,-43.0317,0,-36.71	1/1:7:0,7,0:0:0:7,0:250,0:-22.7213,-2.10721,0,-22.7213,-2.10721,-22.7213	1/1:67:0,67,0:0:0:67,0:2379,0:-211.906,-20.169,0,-211.906,-20.169,-211.906	1/2:18:0,7,11:0:0:7,11:246,396:-52.1307,-32.6428,-30.5356,-19.8373,0,-16.5259	1/1:8:0,8,0:0:0:8,0:288,0:-26.0377,-2.40824,0,-26.0377,-2.40824,-26.0377	1/2:14:0,9,5:0:0:9,5:309,180:-39.9187,-15.0469,-12.3376,-25.2247,0,-23.7196	1/2:55:0,24,31:0:0:24,31:852,1116:-160.145,-91.362,-84.1373,-69.138,0,-59.8061	1/1:90:0,90,0:0:0:90,0:3203,0:-283.357,-27.0927,0,-283.357,-27.0927,-283.357	1/1:19:0,19,0:0:0:19,0:656,0:-58.0975,-5.71957,0,-58.0975,-5.71957,-58.0975	1/2:181:0,91,89:0:0:91,89:3208,3173:-515.411,-258.216,-230.822,-257.19,0,-230.399	1/2:103:0,53,50:0:0:53,50:1865,1800:-296.522,-147.117,-131.163,-149.759,0,-134.707	1/1:46:0,42,4:0:0:42,4:1480,144:-131.687,-12.6433,0,-119.937,-0.533763,-118.733	1/1:70:0,70,0:0:0:70,0:2457,0:-217.921,-21.0721,0,-217.921,-21.0721,-217.921	1/1:96:0,91,1:0:0:91,1:3202,36:-285.62,-27.3937,0,-282.683,-24.443,-282.382	1/1:170:0,169,0:0:0:169,0:6016,0:-535.002,-50.8741,0,-535.002,-50.8741,-535.002	1/1:45:0,45,0:0:0:45,0:1580,0:-140.646,-13.5464,0,-140.646,-13.5464,-140.646	1/1:59:0,58,1:0:0:58,1:2053,32:-182.854,-17.4597,0,-180.276,-14.5615,-179.975	1/2:47:0,20,27:0:0:20,27:698,968:-135.506,-79.298,-73.2774,-56.559,0,-48.4311	1/2:17:0,13,4:0:0:13,4:450,144:-48.3729,-12.1095,-8.19611,-36.6193,0,-35.4152	1/2:84:0,46,36:0:0:46,36:1634,1296:-236.425,-105.557,-91.7095,-130.863,0,-120.026	1/1:107:0,107,0:0:0:107,0:3802,0:-337.738,-32.2102,0,-337.738,-32.2102,-337.738	1/1:101:0,100,0:0:0:100,0:3508,0:-312.763,-30.103,0,-312.763,-30.103,-312.763	1/1:110:0,107,0:0:0:107,0:3761,0:-332.226,-32.2102,0,-332.226,-32.2102,-332.226	1/2:85:0,48,37:0:0:48,37:1691,1324:-245.211,-108.304,-93.8546,-137.261,0,-126.123	1/1:61:0,61,0:0:0:61,0:2158,0:-190.48,-18.3628,0,-190.48,-18.3628,-190.48	1/2:23:0,15,8:0:0:15,8:537,288:-67.0777,-23.8414,-19.3259,-43.5939,0,-41.1856	1/2:84:0,37,46:0:0:37,46:1308,1648:-238.62,-134.413,-123.275,-104.239,0,-90.3915	1/2:51:0,26,25:0:0:26,25:927,900:-148.124,-73.76,-65.9332,-74.7192,0,-67.1934	1/1:85:0,84,0:0:0:84,0:2967,0:-262.104,-25.2865,0,-262.104,-25.2865,-262.104	1/1:45:0,45,0:0:0:45,0:1606,0:-142.322,-13.5464,0,-142.322,-13.5464,-142.322	1/1:77:0,77,0:0:0:77,0:2722,0:-242.46,-23.1793,0,-242.46,-23.1793,-242.46	1/2:36:0,17,19:0:0:17,19:606,684:-104.391,-56.1423,-51.0248,-48.6032,0,-42.8836	1/2:123:0,64,59:0:0:64,59:2239,2103:-352.002,-171.692,-152.426,-180.661,0,-162.9	1/1:16:0,16,0:0:0:16,0:566,0:-51.015,-4.81648,0,-51.015,-4.81648,-51.015	1/1:51:0,49,1:0:0:49,1:1699,36:-151.509,-14.7505,0,-148.571,-11.7954,-148.27	1/1:68:0,68,0:0:0:68,0:2361,0:-210.834,-20.47,0,-210.834,-20.47,-210.834	1/1:76:0,75,0:0:0:75,0:2660,0:-235.934,-22.5773,0,-235.934,-22.5773,-235.934	1/2:112:0,57,55:0:0:57,55:2024,1964:-322.778,-160.055,-142.896,-163.076,0,-146.519	1/2:83:0,33,50:0:0:33,50:1117,1783:-235.114,-145.627,-135.693,-89.8299,0,-74.7784	1/1:49:0,48,0:0:0:48,0:1704,0:-151.216,-14.4494,0,-151.216,-14.4494,-151.216	1/1:73:0,72,0:0:0:72,0:2561,0:-226.993,-21.6742,0,-226.993,-21.6742,-226.993
chr04	29756120	.	A	G	188837	PASS	AB=0.473168;ABP=40.649;AC=142;AF=0.755319;AN=188;AO=9038;CIGAR=1X;DP=12242;DPB=12242;DPRA=0;EPP=19628.8;EPPR=6958.24;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.8527;MQMR=59.9716;NS=94;NUMALT=1;ODDS=1.03375;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=322043;QR=114092;RO=3203;RPL=1;RPP=19620.1;RPPR=6958.24;RPR=9037;RUN=1;SAF=1;SAP=19620.1;SAR=9037;SRF=0;SRP=6958.24;SRR=3203;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:12,8:12:419:8:284:-19.8828,0,-32.0221	1/1:178:0,178:0:0:178:6352:-570.975,-53.5833,0	1/1:152:0,152:0:0:152:5444:-490.045,-45.7566,0	1/1:403:1,402:1:36:402:14409:-1292.63,-117.717,0	0/1:104:59,45:59:2079:45:1620:-114.783,0,-156.073	0/1:71:35,36:35:1252:36:1296:-95.5532,0,-91.6119	0/1:127:40,87:40:1432:87:3100:-240.832,0,-90.9468	0/1:294:170,124:170:6053:124:4424:-309.829,0,-456.355	1/1:192:0,192:0:0:192:6835:-615.149,-57.7978,0	1/1:112:0,112:0:0:112:4016:-361.58,-33.7154,0	0/1:57:33,24:33:1176:24:860:-60.5478,0,-88.9891	0/1:76:26,50:26:924:50:1744:-134.363,0,-60.5994	1/1:70:0,70:0:0:70:2485:-223.902,-21.0721,0	1/1:65:0,65:0:0:65:2305:-207.691,-19.567,0	1/1:106:0,106:0:0:106:3751:-337.786,-31.9092,0	0/1:75:38,37:38:1364:37:1328:-97.245,0,-100.483	0/1:96:46,50:46:1648:50:1788:-132.304,0,-119.71	1/1:70:0,70:0:0:70:2449:-220.634,-21.0721,0	0/1:52:20,32:20:716:32:1127:-86.0839,0,-49.1142	0/1:309:190,119:190:6793:119:4243:-289.03,0,-518.153	0/1:183:81,102:81:2860:102:3631:-271.907,0,-202.549	0/1:111:78,33:78:2804:33:1184:-73.4522,0,-219.185	1/1:129:1,128:1:36:128:4560:-406.943,-35.2346,0	1/1:94:7,87:7:248:87:3115:-257.912,-5.63263,0	1/1:90:0,90:0:0:90:3202:-288.356,-27.0927,0	1/1:328:0,328:0:0:328:11669:-1050.04,-98.7378,0	0/1:270:131,139:131:4652:139:4981:-367.158,0,-337.566	0/1:47:21,26:21:752:26:923:-69.2384,0,-53.8578	1/1:300:0,300:0:0:300:10695:-962.444,-90.309,0	0/1:352:183,169:183:6541:169:6038:-437.561,0,-482.809	0/1:186:103,83:103:3659:83:2964:-211,0,-273.522	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:252:0,252:0:0:252:8962:-806.552,-75.8596,0	0/1:273:116,157:116:4151:157:5566:-418.883,0,-291.574	1/1:64:0,64:0:0:64:2273:-204.825,-19.2659,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:245:4,241:4:144:241:8573:-758.226,-60.4387,0	0/1:30:17,13:17:608:13:464:-33.0559,0,-46.0211	0/1:165:87,78:87:3097:78:2770:-199.867,0,-229.287	0/1:93:46,47:46:1627:47:1662:-121.867,0,-118.722	1/1:91:0,91:0:0:91:3248:-292.541,-27.3937,0	1/1:149:1,148:1:36:148:5275:-471.274,-41.2552,0	1/1:156:0,156:0:0:156:5529:-497.615,-46.9607,0	0/1:233:114,119:114:4055:119:4214:-309.18,0,-294.95	0/1:200:108,92:108:3846:92:3269:-234.167,0,-286.131	0/1:215:128,87:128:4545:87:3112:-215.584,0,-344.497	0/1:168:82,86:82:2924:86:3067:-225.672,0,-212.823	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:137:0,137:0:0:137:4900:-441.146,-41.2411,0	0/1:54:27,27:27:954:27:964:-70.8194,0,-69.9183	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:235:0,235:0:0:235:8315:-748.336,-70.7421,0	0/1:107:60,47:60:2121:47:1684:-119.636,0,-158.947	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:14:5,9:5:180:9:316:-24.5644,0,-12.3376	0/1:95:50,45:50:1765:45:1599:-115.602,0,-130.534	1/1:99:0,99:0:0:99:3478:-313.208,-29.802,0	1/1:19:0,19:0:0:19:675:-61.0684,-5.71957,0	0/1:339:207,132:207:7408:132:4667:-318.07,0,-564.717	0/1:285:148,137:148:5285:137:4890:-354.419,0,-389.978	1/1:129:11,118:11:392:118:4239:-346.057,-3.21281,0	1/1:80:0,80:0:0:80:2828:-254.75,-24.0824,0	1/1:289:1,288:1:36:288:10254:-919.138,-83.3994,0	1/1:136:0,136:0:0:136:4876:-438.831,-40.9401,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:90:1,89:1:36:89:3151:-280.216,-23.4944,0	0/1:103:60,43:60:2152:43:1512:-105.363,0,-162.941	0/1:25:13,12:13:460:12:432:-31.695,0,-34.2096	0/1:164:98,66:98:3470:66:2345:-161.782,0,-263.125	1/1:122:0,122:0:0:122:4356:-392.171,-36.7257,0	1/1:165:1,164:1:36:164:5818:-520.103,-46.0717,0	1/1:177:1,175:1:36:175:6250:-558.995,-49.6979,0	0/1:126:59,67:59:2112:67:2403:-178.596,0,-152.419	1/1:226:3,223:3:108:223:7992:-709.129,-57.9576,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:195:104,91:104:3689:91:3264:-235.279,0,-273.513	0/1:167:95,72:95:3369:72:2579:-182.087,0,-253.155	1/1:278:0,278:0:0:278:9918:-892.201,-83.6863,0	1/1:138:0,138:0:0:138:4927:-443.579,-41.5421,0	1/1:73:0,73:0:0:73:2607:-234.876,-21.9752,0	0/1:113:57,56:57:2029:56:1992:-145.492,0,-148.864	0/1:189:88,101:88:3135:101:3609:-268.118,0,-225.482	1/1:58:0,58:0:0:58:2054:-184.701,-17.4597,0	1/1:77:0,77:0:0:77:2757:-248.325,-23.1793,0	1/1:72:0,72:0:0:72:2575:-231.999,-21.6742,0	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	0/1:92:50,42:50:1775:42:1481:-105.888,0,-132.338	0/1:102:63,39:63:2243:39:1396:-95.2332,0,-171.428	1/1:168:0,168:0:0:168:6003:-540.36,-50.573,0	1/1:117:0,117:0:0:117:4156:-374.214,-35.2205,0
chr04	29788277	.	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chr04	29927771	.	G	A	63536.2	PASS	AB=0.522815;ABP=27.682;AC=44;AF=0.236559;AN=186;AO=2867;CIGAR=1X;DP=12602;DPB=12602;DPRA=1.00326;EPP=6228.62;EPPR=21127.1;GTI=0;LEN=1;MEANALT=1.04082;MQM=50.6547;MQMR=52.0825;NS=93;NUMALT=1;ODDS=3.30829;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101579;QR=344911;RO=9732;RPL=1349;RPP=24.6425;RPPR=867.187;RPR=1518;RUN=1;SAF=1349;SAP=24.6425;SAR=1518;SRF=3883;SRP=865.431;SRR=5849;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:31,46:31:1093:46:1655:-120.84,0,-73.7776	0/0:103:103,0:103:3642:0:0:0,-31.0061,-320.377	0/0:179:179,0:179:6334:0:0:0,-53.8844,-559.74	0/0:447:444,3:444:15741:3:108:0,-124.668,-1386.3	0/1:29:16,13:16:576:13:464:-32.5846,0,-42.4586	0/1:6:4,2:4:144:2:72:-4.8304,0,-10.9228	0/1:110:56,54:56:1999:54:1936:-140.37,0,-145.166	0/1:229:76,153:76:2687:153:5370:-400.742,0,-169.689	0/0:192:192,0:192:6879:0:0:0,-57.7978,-604.743	0/0:147:147,0:147:5218:0:0:0,-44.2514,-464.598	0/1:70:39,31:39:1350:31:1082:-75.5592,0,-99.0162	0/1:158:80,78:80:2835:78:2782:-194.44,0,-199.357	0/0:161:161,0:161:5760:0:0:0,-48.4658,-499.178	0/0:113:113,0:113:3998:0:0:0,-34.0164,-354.106	0/0:138:138,0:138:4882:0:0:0,-41.5421,-431.252	0/1:107:56,51:56:1966:51:1789:-125.772,0,-141.223	0/1:83:44,39:44:1567:39:1380:-96.4423,0,-112.339	0/0:66:66,0:66:2308:0:0:0,-19.868,-203.292	0/1:36:18,18:18:648:18:639:-45.8681,0,-46.4794	0/1:242:123,119:123:4383:119:4242:-300.374,0,-312.556	0/1:295:148,147:148:5223:147:5194:-366.408,0,-372.248	0/1:118:48,70:48:1695:70:2489:-186.408,0,-113.845	0/0:172:172,0:172:6114:0:0:0,-51.7772,-544.336	0/0:105:99,6:99:3527:6:216:0,-11.8176,-294.803	0/0:63:63,0:63:2239:0:0:0,-18.9649,-199.509	0/0:389:389,0:389:13801:0:0:0,-117.101,-1225.99	0/1:148:88,60:88:3115:60:2144:-144.296,0,-229.897	0/1:68:29,39:29:1032:39:1394:-102.192,0,-69.2098	0/0:363:361,2:361:12750:2:72:0,-102.954,-1131.35	0/1:114:58,55:58:2068:55:1917:-135.64,0,-149.106	0/1:163:69,94:69:2471:94:3296:-242.854,0,-171.414	0/1:6:2,4:2:72:4:144:-11.1084,0,-5.03054	0/1:8:1,7:1:36:7:252:-20.6192,0,-1.19003	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/1:11:2,9:2:72:9:324:-25.8106,0,-3.52293	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.9912	0/0:337:336,0:336:11904:0:0:0,-101.146,-1054.8	0/1:110:45,65:45:1586:65:2316:-170.339,0,-108.734	0/0:60:60,0:60:2117:0:0:0,-18.0618,-183.753	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.94097	0/0:161:161,0:161:5716:0:0:0,-48.4658,-500.729	0/1:36:16,20:16:572:20:704:-51.8222,0,-39.6108	0/1:229:100,129:100:3501:129:4552:-335.397,0,-244.251	0/1:121:58,63:58:2055:63:2256:-162.869,0,-146.532	0/0:110:110,0:110:3897:0:0:0,-33.1133,-345.792	0/0:136:136,0:136:4804:0:0:0,-40.9401,-430.422	0/0:153:153,0:153:5452:0:0:0,-46.0576,-478.051	0/1:360:172,188:172:6104:188:6666:-482.07,0,-433.157	0/1:146:56,90:56:1990:90:3208:-238.297,0,-132.072	0/1:241:108,133:108:3820:133:4751:-349.866,0,-265.981	0/1:128:64,64:64:2264:64:2279:-164.703,0,-164.211	0/1:8:6,2:6:216:2:72:-4.42364,0,-17.207	0/0:131:131,0:131:4654:0:0:0,-39.4349,-407.928	0/1:70:42,28:42:1489:28:995:-67.5472,0,-112.247	.:.:.:.:.:.:.:.	0/0:190:190,0:190:6698:0:0:0,-57.1957,-590.085	0/1:76:31,45:31:1086:45:1560:-116.262,0,-73.9623	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1986	0/1:23:9,14:9:316:14:500:-38.1071,0,-21.7268	0/1:108:56,51:56:1972:51:1787:-123.486,0,-143.93	0/0:119:119,0:119:4208:0:0:0,-35.8226,-371.741	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.94097	0/1:205:156,49:156:5563:49:1733:-93.2787,0,-432.7	0/1:331:104,227:104:3642:227:8055:-614.212,0,-225.357	0/0:79:78,1:78:2778:1:36:0,-20.1831,-241.058	0/0:30:30,0:30:1068:0:0:0,-9.0309,-94.3808	0/0:291:291,0:291:10339:0:0:0,-87.5997,-915.895	0/0:199:197,2:197:6932:2:72:0,-53.159,-610.774	0/0:67:67,0:67:2365:0:0:0,-20.169,-210.394	0/0:81:81,0:81:2859:0:0:0,-24.3834,-251.513	0/1:75:41,34:41:1439:34:1216:-86.6639,0,-106.143	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.5768	0/1:88:32,56:32:1116:56:1986:-149.403,0,-72.7198	0/0:140:140,0:140:4958:0:0:0,-42.1442,-437.359	0/0:225:225,0:225:7986:0:0:0,-67.7317,-706.482	0/0:326:326,0:326:11536:0:0:0,-98.1358,-1022.7	0/1:37:19,18:19:676:18:636:-44.2598,0,-49.2637	0/0:119:119,0:119:4187:0:0:0,-35.8226,-369.747	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:251:138,113:138:4907:113:3998:-278.164,0,-356.298	0/1:202:113,89:113:4043:89:3162:-213.296,0,-292.552	0/0:392:392,0:392:13957:0:0:0,-118.004,-1238.39	0/0:83:83,0:83:2949:0:0:0,-24.9855,-260.746	0/0:136:136,0:136:4840:0:0:0,-40.9401,-431.076	0/1:110:50,60:50:1727:60:2128:-155.532,0,-120.554	0/1:207:109,98:109:3862:98:3482:-244.779,0,-279.224	0/0:50:50,0:50:1756:0:0:0,-15.0515,-153.494	0/0:124:124,0:124:4405:0:0:0,-37.3277,-381.486	0/0:143:143,0:143:5089:0:0:0,-43.0473,-439.352	0/0:67:67,0:67:2362:0:0:0,-20.169,-209.62	0/1:106:50,56:50:1784:56:1923:-138.688,0,-127.444	0/1:111:39,72:39:1375:72:2545:-191.996,0,-89.4378	0/0:325:325,0:325:11481:0:0:0,-97.8347,-1020.1	0/0:207:207,0:207:7371:0:0:0,-62.3132,-649.228
chr04	29947610	.	C	T	8674.8	PASS	AB=0.339431;ABP=443.731;AC=32;AF=0.170213;AN=188;AO=672;CIGAR=1X;DP=6627;DPB=6627;DPRA=0.928686;EPP=1453.57;EPPR=6565.77;GTI=5;LEN=1;MEANALT=1.02941;MQM=47.3214;MQMR=59.5835;NS=94;NUMALT=1;ODDS=0.409218;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23931;QR=211439;RO=5954;RPL=671;RPP=1453.57;RPPR=12879.9;RPR=1;RUN=1;SAF=0;SAP=1462.24;SAR=672;SRF=850;SRP=6602.96;SRR=5104;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:66:66,0:66:2350:0:0:0,-19.868,-211.732	0/0:44:44,0:44:1567:0:0:0,-13.2453,-140.83	0/0:109:109,0:109:3852:0:0:0,-32.8123,-346.762	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.533	0/1:50:31,18:31:1104:18:644:-42.8267,0,-84.7042	0/1:83:45,38:45:1603:38:1352:-95.5267,0,-119.574	0/0:66:66,0:66:2344:0:0:0,-19.868,-211.189	0/0:80:80,0:80:2839:0:0:0,-24.0824,-255.699	0/0:97:97,0:97:3436:0:0:0,-29.1999,-309.111	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.117	0/0:68:68,0:68:2406:0:0:0,-20.47,-216.794	0/0:111:111,0:111:3929:0:0:0,-33.4143,-353.72	0/0:99:99,0:99:3485:0:0:0,-29.802,-313.862	0/1:100:82,18:82:2884:18:644:-27.6916,0,-229.53	0/1:81:62,19:62:2224:19:680:-36.0797,0,-175.826	0/1:83:65,18:65:2298:18:632:-31.7759,0,-182.067	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.083	0/1:55:44,11:44:1571:11:396:-18.6458,0,-125.124	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.415	0/1:69:51,18:51:1828:18:644:-37.0713,0,-144.03	0/1:92:58,34:58:2067:34:1188:-78.7641,0,-158.577	0/0:76:76,0:76:2694:0:0:0,-22.8783,-242.129	0/0:62:62,0:62:2199:0:0:0,-18.6639,-198.086	0/1:62:44,18:44:1575:18:632:-38.2223,0,-123.32	0/0:72:72,0:72:2564:0:0:0,-21.6742,-230.853	0/0:129:129,0:129:4599:0:0:0,-38.8329,-413.961	0/0:155:155,0:155:5536:0:0:0,-46.6596,-498.249	0/0:49:49,0:49:1739:0:0:0,-14.7505,-156.792	0/0:100:100,0:100:3550:0:0:0,-30.103,-319.644	0/0:56:56,0:56:1986:0:0:0,-16.8577,-178.999	0/1:44:21,23:21:756:23:820:-59.4564,0,-55.0604	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:6,4:6:216:4:135:-9.38112,0,-16.7802	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2807	0/0:218:218,0:218:7709:0:0:0,-65.6245,-693.672	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.262	0/1:77:56,21:56:1936:21:756:-43.6632,0,-151.276	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.819	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.231	0/0:141:141,0:141:5039:0:0:0,-42.4452,-453.396	0/0:63:63,0:63:2233:0:0:0,-18.9649,-201.233	0/1:63:49,14:49:1722:14:504:-25.7908,0,-136.27	0/0:117:117,0:117:4146:0:0:0,-35.2205,-373.188	0/1:58:33,25:33:1175:25:884:-61.4982,0,-88.5972	0/0:122:122,0:122:4313:0:0:0,-36.7257,-388.284	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.817	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:113:112,1:112:4008:1:36:0,-30.4496,-357.258	0/1:8:3,5:3:108:5:169:-12.9452,0,-7.66693	0/0:47:46,1:46:1648:1:36:0,-10.5816,-144.983	0/0:19:19,0:19:666:0:0:0,-5.71957,-60.2351	0/1:2:1,1:1:36:1:36:-2.96475,0,-2.99621	0/1:86:43,43:43:1544:43:1536:-111.39,0,-112.845	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.258	0/1:5:1,4:1:36:4:140:-11.3331,0,-2.09312	0/1:17:12,5:12:428:5:180:-11.2898,0,-33.7413	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.483	0/1:118:76,42:76:2712:42:1504:-98.2789,0,-208.774	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.108	0/1:117:63,54:63:2240:54:1927:-137.131,0,-166.582	0/1:50:45,5:45:1607:5:176:-1.00594,0,-129.865	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.2531	0/1:130:69,61:69:2460:61:2156:-153.621,0,-182.493	0/0:76:76,0:76:2700:0:0:0,-22.8783,-243.217	0/0:59:59,0:59:2080:0:0:0,-17.7608,-187.24	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.151	0/1:79:60,19:60:2097:19:680:-37.194,0,-165.215	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:128:128,0:128:4532:0:0:0,-38.5318,-407.935	0/1:58:33,25:33:1179:25:900:-63.3931,0,-88.9245	0/0:96:96,0:96:3403:0:0:0,-28.8989,-306.39	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.083	0/0:103:103,0:103:3664:0:0:0,-31.0061,-329.369	0/0:39:39,0:39:1372:0:0:0,-11.7402,-123.7	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/1:42:22,20:22:784:20:712:-51.3578,0,-58.2407	0/0:149:149,0:149:5280:0:0:0,-44.8535,-475.11	0/0:98:98,0:98:3477:0:0:0,-29.5009,-313.084	0/0:89:89,0:89:3168:0:0:0,-26.7917,-285.337	0/1:70:62,8:62:2184:8:288:-4.96563,0,-175.724	0/0:156:155,1:155:5492:1:36:0,-43.3939,-490.653	0/1:36:26,10:26:932:10:360:-21.5712,0,-73.3618	0/0:89:89,0:89:3131:0:0:0,-26.7917,-282.017	0/0:100:100,0:100:3540:0:0:0,-30.103,-318.695	0/0:68:68,0:68:2388:0:0:0,-20.47,-215.177	0/1:162:106,56:106:3751:56:1996:-128.285,0,-288.964	0/1:61:30,31:30:1046:31:1116:-80.9181,0,-76.0571	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.672	0/0:118:118,0:118:4205:0:0:0,-35.5215,-378.573
chr04	30002474	.	G	C	118197	PASS	AB=0.512094;ABP=15.8256;AC=46;AF=0.244681;AN=188;AO=5209;CIGAR=1X;DP=21859;DPB=21859;DPRA=1.1488;EPP=11314.2;EPPR=36116.8;GTI=1;LEN=1;MEANALT=1.08772;MQM=59.9833;MQMR=59.9906;NS=94;NUMALT=1;ODDS=3.24274;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184802;QR=591319;RO=16639;RPL=2368;RPP=96.2761;RPPR=268.761;RPR=2841;RUN=1;SAF=2368;SAP=96.2761;SAR=2841;SRF=7608;SRP=267.274;SRR=9031;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:130:62,68:62:2196:68:2411:-178.112,0,-158.77	0/0:372:372,0:372:13189:0:0:0,-111.983,-1186.82	0/0:307:307,0:307:10961:0:0:0,-92.4162,-986.017	0/0:571:569,2:569:20205:2:72:0,-165.051,-1811.14	0/1:98:45,53:45:1591:53:1895:-141.326,0,-113.979	0/1:147:69,78:69:2442:78:2798:-207.808,0,-175.784	0/1:229:123,105:123:4368:105:3724:-266.364,0,-324.3	0/1:440:211,228:211:7514:228:8052:-592.187,0,-543.79	0/0:342:342,0:342:12180:0:0:0,-102.952,-1096.05	0/0:242:242,0:242:8615:0:0:0,-72.8493,-775.349	0/1:152:76,76:76:2680:76:2662:-194.067,0,-195.688	0/1:227:116,111:116:4116:111:3939:-286.369,0,-302.292	0/0:158:158,0:158:5632:0:0:0,-47.5627,-507.001	0/0:195:195,0:195:6874:0:0:0,-58.7008,-618.725	0/0:180:180,0:180:6391:0:0:0,-54.1854,-575.28	0/1:146:73,73:73:2589:73:2612:-191.378,0,-189.308	0/1:165:85,80:85:3025:80:2826:-204.91,0,-222.81	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/1:107:65,42:65:2328:42:1483:-101.554,0,-177.57	0/1:505:247,258:247:8794:258:9124:-669.122,0,-639.428	0/1:478:242,235:242:8646:235:8338:-606.481,0,-633.165	0/1:182:66,116:66:2357:116:4090:-313.498,0,-157.599	0/0:298:298,0:298:10601:0:0:0,-89.7069,-954.008	0/0:128:122,6:122:4338:6:197:0,-20.4805,-372.546	0/0:160:158,1:158:5593:1:32:0,-45.0043,-500.277	0/0:591:588,3:588:20868:3:104:0,-168.206,-1867.91	0/1:564:297,267:297:10591:267:9465:-682.034,0,-783.324	0/1:87:48,39:48:1692:39:1387:-98.9385,0,-126.374	0/0:606:605,1:605:21623:1:36:0,-178.826,-1941.92	0/1:340:179,161:179:6313:161:5751:-415.357,0,-465.918	0/1:272:142,130:142:5064:130:4634:-335.344,0,-374.027	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:445:445,0:445:15843:0:0:0,-133.958,-1425.57	0/1:353:180,173:180:6322:173:6111:-443.814,0,-462.812	0/0:121:121,0:121:4256:0:0:0,-36.4246,-383.201	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:314:303,11:303:10793:11:387:0,-59.3575,-936.112	0/1:77:40,37:40:1432:37:1296:-93.7618,0,-105.998	0/1:394:160,234:160:5680:234:8362:-633.981,0,-392.714	0/1:163:81,82:81:2903:82:2922:-214.146,0,-212.437	0/0:136:136,0:136:4781:0:0:0,-40.9401,-430.449	0/0:266:266,0:266:9504:0:0:0,-80.074,-855.049	0/0:303:303,0:303:10694:0:0:0,-91.2121,-962.379	0/1:366:173,193:173:6162:193:6863:-507.562,0,-444.504	0/1:253:117,136:117:4169:136:4843:-359.862,0,-299.232	0/1:418:193,225:193:6856:225:7990:-593.292,0,-491.281	0/1:278:145,133:145:5156:133:4710:-340.375,0,-380.495	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:341:341,0:341:12130:0:0:0,-102.651,-1091.56	0/1:146:102,44:102:3638:44:1575:-98.0905,0,-283.674	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:339:338,0:338:12042:0:0:0,-101.748,-1083.28	0/1:103:45,58:45:1597:58:2059:-154.575,0,-113.012	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:37:16,21:16:576:21:746:-56.3265,0,-41.0369	0/1:161:74,87:74:2577:87:3083:-229.231,0,-183.71	0/0:254:253,0:253:9026:0:0:0,-76.1606,-811.959	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/1:406:170,236:170:6026:236:8393:-633.158,0,-420.23	0/1:439:199,240:199:7103:240:8560:-638.244,0,-507.176	0/0:162:150,12:150:5330:12:428:0,-9.90805,-440.976	0/0:272:272,0:272:9674:0:0:0,-81.8802,-870.617	0/0:516:515,0:515:18374:0:0:0,-155.03,-1653.05	0/0:369:367,2:367:13000:2:72:0,-104.243,-1162.99	0/0:69:69,0:69:2440:0:0:0,-20.7711,-219.854	0/0:179:177,2:177:6301:2:72:0,-47.0476,-560.346	0/1:185:86,99:86:3023:99:3520:-261.319,0,-216.611	0/1:38:12,26:12:432:26:917:-71.4063,0,-27.7821	0/1:292:157,135:157:5571:135:4789:-343.266,0,-413.616	0/0:186:185,0:185:6599:0:0:0,-55.6905,-593.633	0/0:660:660,0:660:23369:0:0:0,-198.68,-2102.61	0/0:331:331,0:331:11783:0:0:0,-99.6409,-1060.34	0/1:284:142,142:142:5062:142:5012:-365.728,0,-370.234	0/0:279:275,2:275:9720:2:72:0,-76.9084,-867.918	0/1:7:2,5:2:72:5:164:-12.9744,0,-4.72951	0/1:276:148,128:148:5252:128:4562:-327.662,0,-389.733	0/1:260:112,148:112:3965:148:5218:-390.39,0,-278.767	0/0:520:519,1:519:18465:1:36:0,-152.937,-1657.84	0/0:169:169,0:169:6035:0:0:0,-50.8741,-543.255	0/0:176:176,0:176:6272:0:0:0,-52.9813,-564.572	0/1:148:70,78:70:2500:78:2757:-203.818,0,-180.701	0/1:344:179,165:179:6332:165:5821:-420.455,0,-466.422	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.639	0/0:167:167,0:167:5921:0:0:0,-50.272,-532.987	0/0:183:183,0:183:6505:0:0:0,-55.0885,-585.538	0/0:103:102,0:102:3595:0:0:0,-30.7051,-323.399	0/1:180:100,80:100:3530:80:2817:-199.584,0,-263.724	0/1:181:53,128:53:1891:128:4545:-354.732,0,-115.981	0/0:267:267,0:267:9437:0:0:0,-80.375,-849.302	0/0:260:260,0:260:9261:0:0:0,-78.2678,-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chr04	30003916	.	A	C	16451.8	PASS	AB=0.418224;ABP=152.172;AC=46;AF=0.247312;AN=186;AO=1078;CIGAR=1X;DP=5899;DPB=5899;DPRA=0.867909;EPP=2343.86;EPPR=10467.3;GTI=3;LEN=1;MEANALT=1.02;MQM=59.6846;MQMR=59.5885;NS=93;NUMALT=1;ODDS=3.06552;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38578;QR=171953;RO=4819;RPL=0;RPP=2343.86;RPPR=10467.3;RPR=1078;RUN=1;SAF=1078;SAP=2343.86;SAR=0;SRF=4819;SRP=10467.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:29,13:29:1044:13:460:-29.0921,0,-81.5898	0/0:45:44,1:44:1554:1:36:0,-9.94807,-136.546	0/0:156:156,0:156:5566:0:0:0,-46.9607,-500.873	0/0:185:185,0:185:6508:0:0:0,-55.6905,-585.655	0/1:32:21,11:21:756:11:394:-26.1656,0,-58.7343	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	0/1:66:44,22:44:1554:22:792:-51.7377,0,-120.277	0/1:87:64,23:64:2281:23:824:-48.2311,0,-179.352	0/0:85:85,0:85:3041:0:0:0,-25.5875,-273.85	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.77	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/1:55:27,28:27:972:28:1000:-73.752,0,-71.1991	0/0:56:56,0:56:2001:0:0:0,-16.8577,-180.354	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.6958	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.608	0/1:26:12,14:12:432:14:500:-37.5048,0,-31.3944	0/1:23:15,8:15:540:8:284:-18.9797,0,-42.0128	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:56:32,24:32:1152:24:864:-61.2249,0,-87.1321	0/1:108:54,54:54:1921:54:1924:-140.727,0,-140.489	0/1:109:26,83:26:932:83:2967:-234.389,0,-51.3799	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.702	0/1:65:59,6:59:2094:6:216:-0.223563,0,-169.133	0/0:43:43,0:43:1514:0:0:0,-12.9443,-136.504	0/0:191:190,1:190:6777:1:36:0,-53.8985,-606.179	0/1:188:118,70:118:4191:70:2501:-168.738,0,-320.632	0/1:22:10,12:10:360:12:423:-31.782,0,-26.1212	0/0:247:247,0:247:8792:0:0:0,-74.3544,-791.033	0/1:71:45,26:45:1616:26:936:-63.1654,0,-124.35	0/1:35:26,9:26:936:9:324:-18.9698,0,-74.0211	0/1:12:2,10:2:72:10:351:-28.3091,0,-3.22436	0/1:20:10,10:10:360:10:356:-26.3606,0,-26.7237	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.8482	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.213	0/0:133:133,0:133:4772:0:0:0,-40.037,-429.513	0/1:98:53,45:53:1900:45:1601:-114.873,0,-141.721	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5802	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:74:74,0:74:2645:0:0:0,-22.2762,-238.257	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/1:71:29,42:29:1021:42:1504:-114.271,0,-70.8179	0/1:23:10,13:10:352:13:468:-35.536,0,-25.0912	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2355	0/0:94:94,0:94:3342:0:0:0,-28.2968,-300.972	0/0:89:89,0:89:3176:0:0:0,-26.7917,-285.992	0/1:130:78,52:78:2759:52:1872:-129.625,0,-209.4	0/1:88:45,43:45:1605:43:1544:-112.755,0,-118.24	0/1:54:35,19:35:1241:19:680:-45.2712,0,-95.7369	0/1:80:49,31:49:1748:31:1116:-76.6659,0,-133.513	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/0:106:106,0:106:3756:0:0:0,-31.9092,-338.202	0/1:51:35,16:35:1241:16:568:-36.096,0,-96.64	.:.:.:.:.:.:.:.	0/0:143:143,0:143:5113:0:0:0,-43.0473,-460.292	0/1:31:16,15:16:572:15:536:-39.2419,0,-42.4815	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:66:39,27:39:1396:27:964:-67.2042,0,-106.067	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.062	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7881	0/1:122:72,50:72:2580:50:1792:-124.833,0,-195.717	0/1:100:61,38:61:2192:38:1347:-91.3608,0,-167.374	0/0:39:38,1:38:1338:1:36:0,-8.147,-117.109	0/0:66:66,0:66:2357:0:0:0,-19.868,-210.839	0/0:120:119,1:119:4246:1:36:0,-32.5253,-378.697	0/0:109:109,0:109:3905:0:0:0,-32.8123,-351.601	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1657	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.546	0/1:37:19,18:19:669:18:648:-47.5138,0,-48.9627	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9758	0/1:120:74,46:74:2652:46:1650:-112.656,0,-202.767	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.106	0/0:86:86,0:86:3024:0:0:0,-25.8886,-272.236	0/0:120:120,0:120:4320:0:0:0,-36.1236,-388.837	0/1:61:34,27:34:1209:27:968:-69.0593,0,-90.6784	0/0:95:95,0:95:3374:0:0:0,-28.5978,-303.751	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/1:69:55,14:55:1976:14:500:-24.5605,0,-157.176	0/1:47:32,15:32:1118:15:536:-34.4182,0,-86.775	0/0:145:145,0:145:5170:0:0:0,-43.6493,-465.419	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.907	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.736	0/1:19:14,5:14:500:5:176:-10.4654,0,-39.6119	0/1:67:34,33:34:1220:33:1184:-86.6923,0,-89.9285	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.3985	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.09	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:18:17,0:17:608:0:0:0,-5.11751,-53.1172	0/1:74:41,33:41:1476:33:1188:-84.9416,0,-110.855	0/1:29:14,15:14:504:15:540:-40.202,0,-36.9682	0/0:133:133,0:133:4738:0:0:0,-40.037,-426.057	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.56
chr04	30003937	.	AGATA	TGATT,AGATT	154465	PASS	AB=0.582194,0.413901;ABP=153.293,167.911;AC=140,46;AF=0.752688,0.247312;AN=186;AO=4829,1069;CIGAR=1X3M1X,4M1X;DP=5928;DPB=5928.6;DPRA=0,0.987575;EPP=2437.96,956.153;EPPR=5.18177;GTI=4;LEN=5,1;MEANALT=1.83871,2.2037;MQM=59.6107,59.6932;MQMR=60;NS=93;NUMALT=2;ODDS=2.86159;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=170769,38304;QR=30;RO=1;RPL=1251,192;RPP=2437.96,956.153;RPPR=5.18177;RPR=3578,877;RUN=1,1;SAF=4829,1069;SAP=10489.1,2324.31;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,26,13:0:0:26,13:905,459:-110.944,-37.3729,-29.5461,-73.5653,0,-69.6519	1/1:45:0,44,1:0:0:44,1:1539,36:-138.441,-13.2453,0,-135.503,-9.94808,-135.202	1/1:158:0,156,0:0:0:156,0:5478,0:-492.714,-46.9607,0,-492.714,-46.9607,-492.714	1/1:186:0,186,0:0:0:186,0:6507,0:-585.695,-55.9916,0,-585.695,-55.9916,-585.695	1/2:32:0,21,11:0:0:21,11:744,396:-93.2758,-32.6714,-26.3498,-60.9622,0,-57.6509	1/2:17:0,11,6:0:0:11,6:390,216:-49.7538,-17.9843,-14.673,-32.1274,0,-30.3212	1/2:66:0,44,22:0:0:44,22:1548,788:-190.629,-64.6221,-51.3768,-126.363,0,-119.74	1/2:87:0,64,23:0:0:64,23:2290,827:-254.5,-67.7712,-48.5053,-187.087,0,-180.164	1/1:84:0,82,0:0:0:82,0:2893,0:-260.211,-24.6845,0,-260.211,-24.6845,-260.211	1/1:52:0,51,1:0:0:51,1:1806,36:-162.431,-15.3525,0,-159.494,-12.0553,-159.193	1/2:24:0,14,10:0:0:14,10:490,360:-69.5946,-29.734,-25.5196,-40.2163,0,-37.206	1/2:55:0,27,28:0:0:27,28:971,1004:-161.419,-82.2403,-74.1125,-79.5379,0,-71.1091	1/1:57:0,57,0:0:0:57,0:2008,0:-180.983,-17.1587,0,-180.983,-17.1587,-180.983	1/1:25:0,25,0:0:0:25,0:879,0:-79.1884,-7.52575,0,-79.1884,-7.52575,-79.1884	1/1:43:0,43,0:0:0:43,0:1528,0:-137.809,-12.9443,0,-137.809,-12.9443,-137.809	1/2:26:0,13,13:0:0:13,13:467,459:-75.8259,-37.7261,-33.8127,-38.4558,0,-34.5424	1/2:24:0,16,8:0:0:16,8:552,288:-68.6911,-23.8592,-19.0427,-45.1868,0,-42.7785	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:15:0,9,6:0:0:9,6:319,216:-43.9688,-17.9843,-15.2751,-26.3421,0,-24.5359	1/2:56:0,32,24:0:0:32,24:1135,860:-162.965,-70.4971,-60.8642,-92.8249,0,-85.6001	1/2:107:1,54,52:1:30:54,52:1903,1863:-304.152,-149.587,-135.729,-152.522,0,-139.266	1/2:108:0,26,82:0:0:26,82:932,2933:-315.465,-239.457,-231.63,-76.3656,0,-51.6811	1/1:64:0,64,0:0:0:64,0:2267,0:-204.29,-19.2659,0,-204.29,-19.2659,-204.29	1/2:64:0,57,6:0:0:57,6:2022,216:-182.39,-17.6675,-0.508798,-164.765,0,-162.959	1/1:44:0,44,0:0:0:44,0:1560,0:-140.646,-13.2453,0,-140.646,-13.2453,-140.646	1/1:193:0,190,1:0:0:190,1:6713,36:-603.526,-57.1957,0,-600.589,-54.2433,-600.288	1/2:187:0,118,68:0:0:118,68:4164,2444:-538.513,-199.506,-163.984,-339.13,0,-318.66	1/2:22:0,11,11:0:0:11,11:391,392:-64.1708,-32.3087,-28.9974,-32.2178,0,-28.9065	1/1:252:0,248,2:0:0:248,2:8800,72:-791.44,-74.6554,0,-785.565,-68.7801,-784.963	1/2:72:0,46,26:0:0:46,26:1614,928:-207.334,-75.9905,-62.1431,-131.698,0,-123.871	1/2:35:0,26,9:0:0:26,9:918,324:-101.547,-26.7966,-18.9698,-75.1087,0,-72.3995	1/2:12:0,2,10:0:0:2,10:72,360:-35.5996,-29.7247,-29.1227,-6.23466,0,-3.22436	1/2:20:0,10,10:0:0:10,10:357,360:-58.8375,-29.734,-26.7237,-29.4618,0,-26.4515	1/1:12:0,11,0:0:0:11,0:390,0:-35.1475,-3.31133,0,-35.1475,-3.31133,-35.1475	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:13:0,12,0:0:0:12,0:421,0:-37.8572,-3.61236,0,-37.8572,-3.61236,-37.8572	1/1:136:0,136,0:0:0:136,0:4771,0:-429.301,-40.9401,0,-429.301,-40.9401,-429.301	1/2:97:0,53,44:0:0:53,44:1883,1571:-281.827,-128.431,-112.476,-153.752,0,-140.506	1/1:22:0,22,0:0:0:22,0:777,0:-70.2261,-6.62266,0,-70.2261,-6.62266,-70.2261	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/1:74:0,74,0:0:0:74,0:2606,0:-234.771,-22.2762,0,-234.771,-22.2762,-234.771	1/2:15:0,4,11:0:0:4,11:135,396:-43.6065,-32.6714,-31.4673,-11.2784,0,-7.96706	1/2:71:0,30,41:0:0:30,41:1062,1472:-206.919,-120.424,-111.393,-86.851,0,-74.5087	1/2:23:0,10,13:0:0:10,13:344,468:-66.4738,-38.5463,-35.536,-28.2784,0,-24.365	1/1:23:0,23,0:0:0:23,0:804,0:-72.6684,-6.92369,0,-72.6684,-6.92369,-72.6684	1/1:95:0,94,0:0:0:94,0:3346,0:-300.985,-28.2968,0,-300.985,-28.2968,-300.985	1/1:88:0,88,0:0:0:88,0:3109,0:-279.98,-26.4906,0,-279.98,-26.4906,-279.98	1/2:130:0,77,51:0:0:77,51:2676,1819:-365.824,-148.278,-125.099,-217.539,0,-202.186	1/2:87:0,45,42:0:0:45,42:1600,1508:-253.745,-123.364,-109.818,-130.738,0,-118.094	1/2:55:0,36,19:0:0:36,19:1271,684:-159.666,-56.1684,-45.3313,-103.855,0,-98.1356	1/2:80:0,48,31:0:0:48,31:1698,1108:-228.633,-90.3363,-75.8869,-138.293,0,-128.961	1/2:5:0,3,2:0:0:3,2:107,72:-14.9552,-6.23466,-5.33157,-9.07908,0,-8.47702	1/1:107:0,106,0:0:0:106,0:3773,0:-339.379,-31.9092,0,-339.379,-31.9092,-339.379	1/2:52:0,36,16:0:0:36,16:1269,576:-150.667,-47.3551,-36.5181,-103.669,0,-98.8527	.:.:.:.:.:.:.:.	1/1:143:0,143,0:0:0:143,0:5114,0:-460.383,-43.0473,0,-460.383,-43.0473,-460.383	1/2:33:0,16,17:0:0:16,17:571,608:-96.4829,-49.9336,-45.1171,-46.9064,0,-41.7889	1/1:14:0,14,0:0:0:14,0:492,0:-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chr04	30019641	.	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chr04	30019656	.	GTCG	GTCA	140609	PASS	AB=0.519887;ABP=12.7701;AC=142;AF=0.755319;AN=188;AO=5153;CIGAR=3M1X;DP=6553;DPB=6553;DPRA=17.6048;EPP=7.14044;EPPR=5.40885;GTI=2;LEN=1;MEANALT=1.22581;MQM=59.6916;MQMR=56.7124;NS=94;NUMALT=1;ODDS=4.93192;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183833;QR=48128;RO=1377;RPL=5145;RPP=11123.2;RPPR=2984.45;RPR=8;RUN=1;SAF=2519;SAP=8.58331;SAR=2634;SRF=670;SRP=5.16916;SRR=707;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:16,16:16:553:16:568:-41.8189,0,-40.22	1/1:84:0,83:0:0:83:2964:-266.696,-24.9855,0	1/1:91:0,91:0:0:91:3235:-291.3,-27.3937,0	1/1:106:0,105:0:0:105:3728:-335.344,-31.6082,0	0/1:44:22,22:22:766:22:788:-57.9949,0,-55.763	0/1:30:10,20:10:355:20:712:-55.3594,0,-23.2183	0/1:53:21,32:21:729:32:1148:-87.6682,0,-49.9604	0/1:61:28,33:28:971:33:1179:-88.0136,0,-69.0417	1/1:82:0,82:0:0:82:2913:-262.342,-24.6845,0	1/1:44:0,44:0:0:44:1584:-142.849,-13.2453,0	0/1:86:26,59:26:898:59:2094:-162.775,0,-55.0995	0/1:118:56,62:56:1938:62:2189:-161.554,0,-138.782	1/1:123:0,123:0:0:123:4391:-395.347,-37.0267,0	1/1:110:0,110:0:0:110:3927:-352.731,-33.1133,0	1/1:108:0,108:0:0:108:3854:-347.02,-32.5112,0	0/1:77:34,43:34:1168:43:1522:-114.035,0,-82.1879	0/1:97:41,56:41:1433:56:2004:-151.425,0,-99.9255	1/1:97:0,96:0:0:96:3435:-309.093,-28.8989,0	0/1:80:40,40:40:1416:40:1436:-105.438,0,-103.474	0/1:122:62,60:62:2175:60:2148:-156.855,0,-159.039	0/1:99:57,42:57:1977:42:1492:-104.763,0,-148.219	0/1:20:14,6:14:485:6:216:-13.7699,0,-37.9519	1/1:46:0,46:0:0:46:1648:-148.604,-13.8474,0	1/1:71:4,67:4:143:67:2396:-202.667,-8.16112,0	1/1:32:0,31:0:0:31:1104:-99.3838,-9.33193,0	1/1:126:0,126:0:0:126:4511:-406.14,-37.9298,0	0/1:102:41,61:41:1460:61:2156:-163.588,0,-100.807	0/1:58:24,34:24:825:34:1220:-92.6406,0,-56.8661	1/1:121:0,120:0:0:120:4296:-386.572,-36.1236,0	0/1:30:21,9:21:744:9:324:-20.475,0,-58.1229	0/1:49:25,24:25:884:24:851:-62.1485,0,-65.0976	0/0:4:4,0:4:143:0:0:0,-1.20412,-13.212	0/1:7:3,4:3:102:4:144:-11.2017,0,-7.40084	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:219:0,219:0:0:219:7820:-702.746,-65.9256,0	0/1:30:20,10:20:693:10:360:-23.7134,0,-53.6325	1/1:112:0,112:0:0:112:4012:-361.268,-33.7154,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:103:1,100:1:36:100:3532:-314.498,-27.1666,0	0/1:62:33,29:33:1148:29:1021:-73.5219,0,-84.8727	0/1:83:41,42:41:1441:42:1495:-109.845,0,-104.739	0/1:111:55,56:55:1924:56:2012:-147.931,0,-139.69	1/1:92:0,91:0:0:91:3264:-293.625,-27.3937,0	1/1:42:0,42:0:0:42:1503:-135.563,-12.6433,0	1/1:45:0,45:0:0:45:1595:-143.812,-13.5464,0	0/1:76:36,40:36:1202:40:1423:-105.479,0,-85.4724	0/1:43:20,23:20:691:23:824:-61.5367,0,-49.4561	0/1:74:32,41:32:1111:41:1460:-109.434,0,-78.0076	0/1:90:40,50:40:1409:50:1783:-133.572,0,-99.9963	0/1:6:3,3:3:107:3:104:-7.89323,0,-8.17114	1/1:96:0,95:0:0:95:3412:-306.703,-28.5979,0	0/1:10:6,4:6:208:4:144:-10.3033,0,-16.0436	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:71:0,71:0:0:71:2544:-229.202,-21.3731,0	0/1:28:14,14:14:470:14:496:-36.5454,0,-34.0873	1/1:10:0,10:0:0:10:356:-32.3785,-3.0103,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3024	0/1:31:14,17:14:501:17:608:-45.7201,0,-36.0347	1/1:125:1,124:1:36:124:4440:-396.158,-34.0331,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:40:24,16:24:854:16:576:-40.1338,0,-65.1314	0/1:86:37,49:37:1299:49:1756:-132.433,0,-91.1367	1/1:37:1,36:1:36:36:1288:-112.626,-7.54494,0	1/1:42:0,39:0:0:39:1398:-125.762,-11.7402,0	1/1:85:1,82:1:36:82:2921:-259.51,-21.7494,0	1/1:75:2,73:2:72:73:2612:-228.469,-15.743,0	1/1:36:0,36:0:0:36:1292:-116.579,-10.8371,0	1/1:67:0,66:0:0:66:2323:-208.953,-19.868,0	0/1:122:59,63:59:2081:63:2239:-165.046,0,-150.746	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9006	0/1:33:11,21:11:393:21:752:-58.0173,0,-25.6692	1/1:48:0,48:0:0:48:1704:-153.629,-14.4494,0	1/1:85:0,85:0:0:85:3036:-273.463,-25.5876,0	1/1:91:0,90:0:0:90:3190:-286.991,-27.0927,0	0/1:53:18,35:18:636:35:1256:-97.3825,0,-41.5319	1/1:71:0,71:0:0:71:2535:-228.281,-21.3731,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:78:35,43:35:1240:43:1544:-115.768,0,-87.8883	0/1:70:34,36:34:1196:36:1287:-94.8623,0,-86.7078	1/1:127:0,127:0:0:127:4523:-406.952,-38.2308,0	1/1:133:1,131:1:36:131:4650:-414.936,-36.4974,0	1/1:97:0,96:0:0:96:3448:-310.235,-28.8989,0	0/1:146:63,83:63:2193:83:2963:-222.947,0,-152.914	0/1:180:93,87:93:3232:87:3107:-225.665,0,-236.763	1/1:46:0,46:0:0:46:1634:-147.339,-13.8474,0	1/1:98:0,98:0:0:98:3485:-313.829,-29.5009,0	1/1:88:1,87:1:28:87:3074:-274.07,-23.6909,0	1/1:71:0,70:0:0:70:2508:-225.615,-21.0721,0	0/1:107:57,50:57:1999:50:1783:-128.504,0,-147.381	0/1:92:66,26:66:2331:26:914:-54.8776,0,-182.248	1/1:60:0,60:0:0:60:2152:-193.946,-18.0618,0	1/1:174:0,173:0:0:173:6174:-555.457,-52.0782,0
chr04	30049715	.	A	T	173374	PASS	AB=0.493934;ABP=4.66995;AC=142;AF=0.755319;AN=188;AO=8220;CIGAR=1X;DP=10868;DPB=10868;DPRA=0;EPP=17852.5;EPPR=5744.38;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.996;MQMR=59.9709;NS=94;NUMALT=1;ODDS=6.98563;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293504;QR=93793;RO=2644;RPL=0;RPP=17852.5;RPPR=5744.38;RPR=8220;RUN=1;SAF=8220;SAP=17852.5;SAR=0;SRF=2644;SRP=5744.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:41,32:41:1441:32:1152:-82.015,0,-108	1/1:147:0,147:0:0:147:5225:-470.391,-44.2514,0	1/1:126:0,125:0:0:125:4454:-400.671,-37.6288,0	1/1:137:0,137:0:0:137:4890:-440.254,-41.2411,0	0/1:61:32,29:32:1118:29:1032:-74.8306,0,-82.5606	0/1:60:19,41:19:672:41:1468:-114.354,0,-42.745	0/1:135:65,70:65:2273:70:2516:-186.052,0,-164.193	0/1:182:95,87:95:3353:87:3097:-224.17,0,-246.973	1/1:112:0,112:0:0:112:4004:-360.55,-33.7154,0	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	0/1:140:70,70:70:2516:70:2501:-183.198,0,-184.547	0/1:114:54,60:54:1924:60:2133:-157.919,0,-139.12	1/1:102:0,102:0:0:102:3664:-329.963,-30.7051,0	1/1:209:0,208:0:0:208:7397:-665.461,-62.6142,0	1/1:76:0,76:0:0:76:2704:-243.605,-22.8783,0	0/1:84:43,41:43:1540:41:1464:-106.77,0,-113.607	0/1:131:60,71:60:2148:71:2548:-190.135,0,-154.153	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:97:46,51:46:1640:51:1828:-135.601,0,-118.689	0/1:175:97,78:97:3449:78:2787:-198.391,0,-257.943	0/1:130:66,64:66:2310:64:2292:-167.407,0,-169.025	0/1:126:85,41:85:3032:41:1466:-94.3064,0,-235.181	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:121:1,120:1:36:120:4300:-383.578,-32.8264,0	1/1:100:0,100:0:0:100:3576:-322.048,-30.103,0	1/1:331:0,331:0:0:331:11847:-1066.09,-99.6409,0	0/1:224:106,118:106:3765:118:4220:-312.55,0,-271.62	0/1:59:27,32:27:964:32:1144:-85.5087,0,-69.3161	1/1:188:0,188:0:0:188:6704:-603.439,-56.5936,0	0/1:143:81,62:81:2873:62:2212:-156.298,0,-215.76	0/1:104:50,54:50:1776:54:1928:-142.49,0,-128.816	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:11:6,5:6:212:5:176:-12.8737,0,-16.1135	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:40:26,14:26:932:14:504:-33.6569,0,-72.1577	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:295:0,295:0:0:295:10548:-949.236,-88.8039,0	0/1:205:100,103:100:3568:103:3688:-270.654,0,-259.86	1/1:137:1,136:1:21:136:4850:-434.554,-39.1412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:95:2,93:2:72:93:3304:-290.744,-21.7611,0	0/1:65:26,39:26:928:39:1400:-106.732,0,-64.2713	0/1:116:61,55:61:2152:55:1972:-142.835,0,-159.029	0/1:81:30,51:30:1061:51:1818:-139.5,0,-70.6372	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	1/1:140:0,140:0:0:140:4988:-449.071,-42.1442,0	1/1:122:0,122:0:0:122:4333:-390.147,-36.7257,0	0/1:156:65,91:65:2336:91:3260:-246.66,0,-163.539	0/1:123:62,61:62:2177:61:2184:-159.799,0,-159.163	0/1:142:70,72:70:2465:72:2580:-189.702,0,-179.358	0/1:281:163,118:163:5731:118:4224:-295.751,0,-431.325	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	1/1:196:1,195:1:36:195:6976:-624.304,-55.4036,0	0/1:53:30,23:30:1072:23:813:-57.5345,0,-80.8379	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:118:0,118:0:0:118:4220:-379.981,-35.5215,0	0/1:24:7,17:7:252:17:608:-47.8273,0,-15.8042	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:29:16,13:16:568:13:468:-33.7298,0,-42.722	0/1:100:54,46:54:1908:46:1644:-118.146,0,-141.895	1/1:207:1,206:1:32:206:7328:-656.374,-59.1139,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:146:56,90:56:1992:90:3202:-244.449,0,-135.604	0/1:296:145,151:145:5149:151:5375:-394.778,0,-374.45	1/1:112:5,107:5:180:107:3819:-327.356,-17.1633,0	1/1:56:0,56:0:0:56:1996:-179.914,-16.8577,0	1/1:134:2,132:2:72:132:4681:-414.614,-33.5013,0	1/1:189:3,186:3:108:186:6668:-590.121,-46.8195,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	0/1:125:61,64:61:2184:64:2286:-168.372,0,-159.197	0/1:24:15,9:15:532:9:324:-22.2811,0,-40.9884	0/1:174:82,92:82:2890:92:3277:-242.771,0,-207.956	1/1:95:0,95:0:0:95:3381:-304.505,-28.5979,0	1/1:276:1,275:1:21:275:9800:-879.853,-80.9843,0	1/1:102:0,102:0:0:102:3645:-328.255,-30.7051,0	0/1:128:72,56:72:2538:56:1989:-140.751,0,-190.137	1/1:114:1,113:1:36:113:4029:-359.2,-30.7191,0	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	0/1:87:48,39:48:1716:39:1385:-98.7572,0,-128.536	0/1:75:33,42:33:1180:42:1504:-113.077,0,-83.9308	1/1:220:0,220:0:0:220:7834:-705.091,-66.2266,0	1/1:137:0,137:0:0:137:4889:-440.162,-41.2411,0	1/1:107:0,107:0:0:107:3828:-344.717,-32.2102,0	0/1:101:51,50:51:1824:50:1762:-128.458,0,-134.037	0/1:185:88,97:88:3096:97:3464:-256.282,0,-223.173	1/1:67:0,67:0:0:67:2366:-213.196,-20.169,0	1/1:119:0,119:0:0:119:4255:-383.129,-35.8226,0	1/1:110:0,110:0:0:110:3936:-354.432,-33.1133,0	1/1:153:0,153:0:0:153:5476:-492.968,-46.0576,0	0/1:256:133,123:133:4730:123:4397:-318.838,0,-348.795	0/1:86:62,24:62:2224:24:856:-51.4725,0,-174.536	1/1:82:0,82:0:0:82:2933:-264.191,-24.6845,0	1/1:126:0,126:0:0:126:4496:-404.81,-37.9298,0
chr04	30049804	.	A	G	139570	PASS	AB=0.448522;ABP=119.041;AC=142;AF=0.755319;AN=188;AO=7160;CIGAR=1X;DP=9960;DPB=9960;DPRA=0;EPP=15490;EPPR=6052.74;GTI=2;LEN=1;MEANALT=1.06383;MQM=59.9923;MQMR=59.9828;NS=94;NUMALT=1;ODDS=2.85984;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243843;QR=99394;RO=2794;RPL=7;RPP=15490;RPPR=6035.41;RPR=7153;RUN=1;SAF=14;SAP=15429.4;SAR=7146;SRF=6;SRP=6018.1;SRR=2788;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:19,10:19:659:10:347:-22.8337,0,-50.9024	1/1:126:0,126:0:0:126:4347:-391.414,-37.9298,0	1/1:166:0,165:0:0:165:5682:-511.153,-49.67,0	1/1:309:2,307:2:72:307:10518:-939.739,-86.1815,0	0/1:85:46,39:46:1640:39:1355:-96.6599,0,-122.301	0/1:30:17,13:17:612:13:451:-31.8889,0,-46.3825	0/1:142:87,55:87:3083:55:1907:-129.158,0,-234.951	0/1:190:100,90:100:3551:90:3115:-223.386,0,-262.605	1/1:54:1,53:1:27:53:1818:-161.197,-13.5558,0	1/1:124:0,123:0:0:123:4228:-380.438,-37.0267,0	0/1:40:24,16:24:849:16:533:-36.2448,0,-64.6866	0/1:99:48,51:48:1693:51:1677:-121.404,0,-122.852	1/1:71:0,71:0:0:71:2439:-219.764,-21.3731,0	1/1:66:0,66:0:0:66:2173:-195.831,-19.868,0	1/1:102:1,101:1:36:101:3458:-307.839,-27.1068,0	0/1:63:35,28:35:1256:28:932:-65.2164,0,-94.3804	0/1:85:55,30:55:1964:30:1030:-67.4165,0,-151.448	1/1:61:0,61:0:0:61:2100:-189.269,-18.3628,0	0/1:39:22,17:22:788:17:591:-41.7751,0,-59.5046	0/1:225:119,106:119:4235:106:3612:-257.561,0,-313.597	0/1:172:109,63:109:3903:63:2109:-138.294,0,-299.686	0/1:380:271,109:271:9571:109:3618:-211.443,0,-746.955	1/1:69:0,69:0:0:69:2397:-215.988,-20.7711,0	1/1:78:1,77:1:36:77:2626:-232.987,-19.8821,0	1/1:49:0,49:0:0:49:1646:-148.195,-14.7505,0	1/1:273:1,272:1:36:272:9244:-828.371,-78.5829,0	0/1:181:73,108:73:2599:108:3677:-276.658,0,-179.672	0/1:54:29,25:29:1027:25:862:-61.6376,0,-76.4866	1/1:196:1,194:1:32:194:6668:-597.02,-55.8215,0	0/1:208:110,98:110:3952:98:3385:-242.255,0,-293.256	0/1:91:38,53:38:1355:53:1808:-135.605,0,-94.856	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0803	0/1:19:11,8:11:387:8:280:-19.8197,0,-29.4464	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:243:0,242:0:0:242:8069:-726.012,-72.8493,0	0/1:183:107,76:107:3789:76:2620:-180.957,0,-286.122	1/1:56:0,56:0:0:56:1935:-174.424,-16.8577,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:153:1,152:1:32:152:5190:-464.056,-42.8583,0	0/1:32:16,16:16:568:16:555:-40.6431,0,-41.8189	0/1:197:107,90:107:3798:90:3016:-212.371,0,-282.714	0/1:105:57,48:57:2040:48:1640:-116.276,0,-152.264	1/1:83:0,83:0:0:83:2698:-243.063,-24.9855,0	1/1:159:0,159:0:0:159:5458:-491.36,-47.8638,0	1/1:130:0,130:0:0:130:4427:-398.618,-39.1339,0	0/1:182:80,102:80:2855:102:3463:-257.098,0,-202.4	0/1:120:67,53:67:2358:53:1851:-130.746,0,-176.353	0/1:146:92,54:92:3287:54:1879:-125.435,0,-252.099	0/1:197:109,88:109:3888:88:3047:-215.161,0,-290.81	0/1:13:8,5:8:280:5:159:-10.7109,0,-21.6259	1/1:148:0,148:0:0:148:5114:-460.419,-44.5524,0	0/1:42:22,20:22:792:20:687:-49.506,0,-58.9624	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:137:0,137:0:0:137:4672:-420.655,-41.2411,0	0/1:54:25,29:25:892:29:989:-73.0583,0,-64.3441	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	0/1:16:5,11:5:180:11:367:-28.536,0,-11.7356	0/1:69:41,28:41:1457:28:929:-63.1406,0,-110.653	1/1:90:0,90:0:0:90:3061:-275.722,-27.0927,0	1/1:10:0,10:0:0:10:321:-29.2023,-3.0103,0	0/1:303:157,145:157:5599:145:4881:-348.183,0,-412.761	0/1:216:108,108:108:3850:108:3671:-265.578,0,-281.674	1/1:57:1,56:1:36:56:1918:-169.296,-13.5604,0	1/1:135:0,135:0:0:135:4623:-416.244,-40.6391,0	1/1:197:1,195:1:36:195:6663:-596.195,-55.7435,0	1/1:104:2,102:2:72:102:3524:-310.537,-24.4704,0	1/1:20:0,20:0:0:20:649:-58.7149,-6.0206,0	1/1:75:2,73:2:72:73:2497:-218.147,-15.7405,0	0/1:71:39,32:39:1382:32:1071:-75.3169,0,-103.304	0/1:16:9,7:9:320:7:219:-15.1996,0,-24.3259	0/1:105:60,45:60:2144:45:1537:-107.005,0,-161.62	1/1:87:0,87:0:0:87:2938:-264.658,-26.1896,0	1/1:44:0,44:0:0:44:1515:-136.638,-13.2453,0	1/1:259:0,259:0:0:259:8873:-798.594,-77.9668,0	0/1:127:87,40:87:3094:40:1339:-82.5666,0,-240.457	1/1:102:0,102:0:0:102:3503:-315.485,-30.7051,0	0/1:12:9,3:9:324:3:85:-4.31964,0,-25.8935	0/1:156:89,67:89:3179:67:2275:-158.05,0,-239.373	0/1:109:38,71:38:1360:71:2424:-185.604,0,-89.8883	1/1:154:0,154:0:0:154:5213:-469.327,-46.3586,0	1/1:96:0,96:0:0:96:3289:-296.235,-28.8989,0	1/1:64:0,64:0:0:64:2143:-193.134,-19.2659,0	0/1:115:49,66:49:1751:66:2209:-164.452,0,-123.255	0/1:161:87,74:87:3107:74:2478:-174.734,0,-230.372	1/1:37:0,37:0:0:37:1277:-115.228,-11.1381,0	1/1:81:0,81:0:0:81:2733:-246.213,-24.3834,0	1/1:79:0,79:0:0:79:2665:-240.096,-23.7814,0	1/1:36:0,36:0:0:36:1232:-111.178,-10.8371,0	0/1:67:32,35:32:1139:35:1194:-87.5916,0,-82.6494	0/1:76:54,22:54:1882:22:735:-43.5841,0,-146.776	1/1:170:0,170:0:0:170:5749:-517.544,-51.1751,0	1/1:130:1,129:1:36:129:4310:-384.492,-35.5356,0
chr04	30049818	.	T	C	47650.4	PASS	AB=0.532784;ABP=51.7036;AC=46;AF=0.244681;AN=188;AO=2798;CIGAR=1X;DP=10553;DPB=10553;DPRA=1.27788;EPP=6078.79;EPPR=16805.9;GTI=1;LEN=1;MEANALT=1.15;MQM=59.99;MQMR=59.9893;NS=94;NUMALT=1;ODDS=0.577878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99481;QR=277252;RO=7742;RPL=2;RPP=6061.43;RPPR=16745.1;RPR=2796;RUN=1;SAF=2;SAP=6061.43;SAR=2796;SRF=9;SRP=16736.5;SRR=7733;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:11,18:11:396:18:635:-48.7471,0,-27.2529	0/0:139:139,0:139:4954:0:0:0,-41.8432,-446.011	0/0:184:184,0:184:6585:0:0:0,-55.3895,-592.729	0/0:334:333,1:333:11952:1:36:0,-96.9457,-1071.93	0/1:88:38,49:38:1360:49:1747:-130.964,0,-96.1512	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	0/1:141:58,83:58:2088:83:2962:-224.368,0,-145.745	0/1:197:99,98:99:3540:98:3458:-252.132,0,-259.506	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/0:128:127,1:127:4548:1:36:0,-34.9336,-405.888	0/1:42:18,24:18:644:24:846:-63.8151,0,-45.6473	0/1:97:52,45:52:1864:45:1578:-113.108,0,-138.84	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:72:71,1:71:2539:1:36:0,-18.0759,-225.162	0/0:109:108,0:108:3863:0:0:0,-32.5112,-347.505	0/1:67:33,34:33:1184:34:1208:-88.8571,0,-86.6993	0/1:87:31,56:31:1116:56:1970:-151.384,0,-74.5621	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.5	0/1:41:19,22:19:684:22:792:-59.2634,0,-49.5481	0/1:228:111,116:111:3972:116:4149:-304.898,0,-288.977	0/1:177:68,109:68:2436:109:3866:-294.853,0,-166.213	0/1:382:109,270:109:3916:270:9584:-748.067,0,-238.182	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:83:82,1:82:2952:1:36:0,-21.3872,-262.314	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.669	0/0:293:291,2:291:10432:2:72:0,-81.3651,-931.96	0/1:187:114,73:114:4092:73:2584:-176.516,0,-312.172	0/1:57:27,29:27:959:29:1023:-75.1645,0,-69.4081	0/0:218:217,1:217:7751:1:36:0,-62.0263,-694.023	0/1:219:110,109:110:3952:109:3876:-283.109,0,-289.945	0/1:95:57,38:57:2039:38:1368:-94.823,0,-155.183	0/1:9:3,6:3:108:6:216:-17.0803,0,-7.3659	0/1:16:8,8:8:288:8:266:-19.4463,0,-21.4509	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:261:261,0:261:9340:0:0:0,-78.5688,-840.543	0/1:188:79,109:79:2840:109:3884:-293.161,0,-199.244	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:171:167,4:167:5977:4:144:0,-38.1625,-524.721	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/1:206:94,112:94:3368:112:3976:-296.019,0,-241.324	0/1:105:49,56:49:1747:56:2000:-148.666,0,-125.905	0/0:93:91,1:91:3252:1:36:0,-24.4563,-289.303	0/0:173:173,0:173:6169:0:0:0,-52.0782,-555.31	0/0:140:140,0:140:5009:0:0:0,-42.1442,-450.955	0/1:194:110,83:110:3929:83:2959:-208.124,0,-295.382	0/1:119:57,62:57:2036:62:2196:-162.082,0,-147.689	0/1:149:56,91:56:1978:91:3232:-246.49,0,-133.68	0/1:200:92,107:92:3300:107:3811:-282.923,0,-236.954	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/0:167:167,0:167:5996:0:0:0,-50.272,-539.743	0/1:43:21,22:21:752:22:788:-58.3005,0,-55.062	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/0:145:145,0:145:5216:0:0:0,-43.6493,-469.575	0/1:56:30,26:30:1072:26:928:-66.9806,0,-79.9348	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:72:30,42:30:1080:42:1497:-113.349,0,-75.8391	0/0:97:96,1:96:3444:1:27:0,-26.5001,-307.473	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:314:156,158:156:5581:158:5622:-411.578,0,-407.888	0/1:229:115,114:115:4128:114:4054:-296.111,0,-302.767	0/0:65:64,1:64:2296:1:36:0,-15.9687,-203.303	0/0:148:148,0:148:5278:0:0:0,-44.5524,-475.11	0/0:214:213,1:213:7660:1:36:0,-60.8221,-685.832	0/0:108:107,1:107:3840:1:36:0,-28.913,-342.197	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:87:85,2:85:3056:2:72:0,-19.3529,-268.432	0/1:81:39,42:39:1400:42:1487:-109.74,0,-101.916	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/1:114:53,61:53:1876:61:2152:-159.628,0,-134.799	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/0:276:276,0:276:9893:0:0:0,-83.0843,-890.308	0/1:133:42,91:42:1504:91:3237:-251.514,0,-95.6176	0/0:115:115,0:115:4098:0:0:0,-34.6184,-369.003	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:166:76,90:76:2720:90:3219:-239.961,0,-195.072	0/1:115:75,40:75:2676:40:1432:-94.5591,0,-206.467	0/0:166:166,0:166:5956:0:0:0,-49.971,-536.146	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:123:75,48:75:2696:48:1712:-117.339,0,-205.857	0/1:161:76,84:76:2723:84:2992:-221.113,0,-196.729	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:93:93,0:93:3322:0:0:0,-27.9958,-299.197	0/0:85:85,0:85:3031:0:0:0,-25.5875,-273.02	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:72:40,32:40:1412:32:1136:-80.8747,0,-105.7	0/1:78:25,53:25:900:53:1892:-147.078,0,-57.8407	0/0:180:180,0:180:6460:0:0:0,-54.1854,-581.484	0/0:132:131,1:131:4708:1:36:0,-36.1377,-420.279
chr04	30049895	.	T	C	22733.1	PASS	AB=0.557285;ABP=68.9384;AC=48;AF=0.263736;AN=182;AO=1309;CIGAR=1X;DP=4961;DPB=4961;DPRA=0.979213;EPP=2750.73;EPPR=7502.71;GTI=0;LEN=1;MEANALT=1.02;MQM=59.4691;MQMR=59.9449;NS=91;NUMALT=1;ODDS=2.53837;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46459;QR=130707;RO=3651;RPL=11;RPP=2750.73;RPPR=7502.71;RPR=1298;RUN=1;SAF=1309;SAP=2845.47;SAR=0;SRF=3651;SRP=7931.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:5,15:5:171:15:532:-42.1843,0,-9.70485	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.744	0/0:84:84,0:84:3011:0:0:0,-25.2865,-271.212	0/0:147:145,2:145:5178:2:72:0,-37.4147,-459.318	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	0/1:4:2,2:2:72:2:64:-4.87457,0,-5.6326	0/1:45:15,30:15:532:30:1062:-82.3361,0,-34.6667	0/1:41:17,24:17:612:24:856:-64.9988,0,-43.0712	0/0:72:72,0:72:2559:0:0:0,-21.6742,-230.543	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.606	0/1:30:16,14:16:563:14:496:-35.9434,0,-41.9683	0/1:72:35,37:35:1251:37:1324:-97.7553,0,-91.2119	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.562	0/0:41:41,0:41:1467:0:0:0,-12.3422,-132.325	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:47:29,18:29:1044:18:631:-42.9627,0,-80.1264	0/1:37:15,22:15:540:22:780:-59.3767,0,-37.7984	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:20:8,12:8:288:12:428:-32.8266,0,-20.2468	0/1:75:44,31:44:1584:31:1097:-76.4557,0,-120.274	0/1:93:39,54:39:1400:54:1916:-144.717,0,-98.3034	0/1:66:15,51:15:532:51:1832:-145.292,0,-28.3451	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:24:20,4:20:716:4:144:-6.0889,0,-57.543	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4806	0/0:147:147,0:147:5275:0:0:0,-44.2514,-474.88	0/1:197:95,102:95:3400:102:3613:-266.028,0,-246.912	0/1:38:21,17:21:756:17:612:-43.9743,0,-56.9281	0/0:152:150,2:150:5375:2:72:0,-38.9198,-477.035	0/1:118:55,63:55:1972:63:2193:-162.057,0,-142.233	0/1:47:20,27:20:716:27:951:-71.7478,0,-50.6193	.:.:.:.:.:.:.:.	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:148:148,0:148:5293:0:0:0,-44.5524,-476.499	0/1:100:47,52:47:1680:52:1855:-136.78,0,-121.42	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	.:.:.:.:.:.:.:.	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/1:21:12,9:12:432:9:314:-22.2741,0,-32.8996	0/1:60:21,39:21:756:39:1392:-107.513,0,-50.3054	0/1:44:22,22:22:779:22:784:-57.6362,0,-57.1867	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.884	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/0:37:36,1:36:1277:1:36:0,-7.53983,-111.633	0/1:62:22,40:22:784:40:1439:-111.049,0,-52.2201	0/1:66:33,33:33:1172:33:1184:-86.914,0,-85.9195	0/1:75:29,46:29:1044:46:1612:-122.055,0,-71.6976	0/1:79:35,44:35:1260:44:1567:-117.522,0,-89.9226	0/1:4:2,2:2:72:2:72:-5.63014,0,-5.6326	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:30:8,22:8:284:22:776:-61.1187,0,-16.8725	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:28:5,23:5:180:23:807:-64.5162,0,-8.12322	.:.:.:.:.:.:.:.	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:37:13,24:13:468:24:860:-66.5791,0,-31.3215	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:80:27,53:27:960:53:1863:-143.854,0,-62.6339	0/1:97:52,45:52:1856:45:1607:-115.717,0,-138.12	0/0:37:36,1:36:1279:1:36:0,-7.54494,-111.732	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.029	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:32:18,14:18:648:14:504:-36.0633,0,-49.0189	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/1:65:33,32:33:1171:32:1148:-84.0491,0,-86.1297	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.078	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.526	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.59	1/1:7:0,7:0:0:7:248:-22.5936,-2.10721,0	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.033	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/1:46:20,26:20:716:26:936:-70.6993,0,-50.9203	0/1:36:15,21:15:536:21:747:-56.6878,0,-37.7377	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:47:25,22:25:888:22:784:-56.7353,0,-66.0906	0/1:113:48,65:48:1728:65:2300:-173.232,0,-121.789	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.211	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:93:39,54:39:1404:54:1908:-143.98,0,-98.6635	0/1:66:20,46:20:716:46:1622:-126.395,0,-44.8997	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.601	0/0:96:96,0:96:3435:0:0:0,-28.8989,-309.362
chr04	30054222	.	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chr04	30090737	.	C	G,A	281279	PASS	AB=0.514512,0.484828;ABP=11.3295,12.103;AC=142,46;AF=0.755319,0.244681;AN=188;AO=7968,2220;CIGAR=1X,1X;DP=10192;DPB=10192;DPRA=0,0.993212;EPP=17305.3,4823.68;EPPR=7.35324;GTI=2;LEN=1,1;MEANALT=1.59574,2.03704;MQM=59.8394,59.8635;MQMR=60;NS=94;NUMALT=2;ODDS=3.10309;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=283975,79234;QR=72;RO=2;RPL=3896,1057;RPP=11.452,14.0007;RPPR=7.35324;RPR=4072,1163;RUN=1,1;SAF=3896,1057;SAP=11.452,14.0007;SAR=4072,1163;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,20,5:0:0:20,5:707,180:-72.6197,-15.0469,-9.02631,-57.9313,0,-56.4261	1/1:131:0,131,0:0:0:131,0:4667,0:-420.122,-39.4349,0,-420.122,-39.4349,-420.122	1/1:129:0,129,0:0:0:129,0:4610,0:-414.969,-38.8329,0,-414.969,-38.8329,-414.969	1/1:188:0,188,0:0:0:188,0:6721,0:-604.888,-56.5936,0,-604.888,-56.5936,-604.888	1/2:40:0,18,22:0:0:18,22:640,792:-117.075,-64.983,-59.5645,-52.449,0,-45.8263	1/2:51:0,27,24:0:0:27,24:968,856:-149.088,-70.1358,-62.008,-79.3096,0,-72.0848	1/2:170:0,98,72:0:0:98,72:3482,2567:-493.337,-209.604,-180.103,-284.089,0,-262.415	1/2:146:0,85,61:0:0:85,61:3016,2159:-421.857,-176.21,-150.623,-246.001,0,-227.638	1/1:130:0,128,2:0:0:128,2:4568,72:-410.803,-38.5318,0,-404.928,-32.2972,-404.326	1/1:102:0,102,0:0:0:102,0:3634,0:-327.253,-30.7051,0,-327.253,-30.7051,-327.253	1/2:136:0,72,64:0:0:72,64:2576,2296:-397.688,-187.633,-165.959,-210.413,0,-191.147	1/2:132:0,80,52:0:0:80,52:2869,1864:-386.359,-152.361,-128.279,-234.356,0,-218.703	1/1:147:0,147,0:0:0:147,0:5244,0:-471.153,-44.2514,0,-471.153,-44.2514,-471.153	1/1:160:0,160,0:0:0:160,0:5723,0:-515.178,-48.1648,0,-515.178,-48.1648,-515.178	1/1:135:0,135,0:0:0:135,0:4817,0:-433.674,-40.6391,0,-433.674,-40.6391,-433.674	1/2:111:0,59,52:0:0:59,52:2103,1860:-323.443,-152.021,-134.261,-171.779,0,-156.125	1/2:150:0,82,68:0:0:82,68:2935,2448:-439.42,-200.104,-175.42,-239.675,0,-219.205	1/1:136:0,136,0:0:0:136,0:4856,0:-437.192,-40.9401,0,-437.192,-40.9401,-437.192	1/2:112:0,55,57:0:0:55,57:1953,2048:-326.563,-167.433,-150.876,-159.487,0,-142.328	1/2:159:0,89,70:0:0:89,70:3181,2501:-462.983,-204.269,-177.477,-259.071,0,-237.999	1/2:142:0,67,75:0:0:67,75:2400,2667:-413.414,-217.687,-197.518,-196.083,0,-173.506	1/2:62:0,25,37:0:0:25,37:885,1314:-179.449,-107.364,-99.8379,-72.4393,0,-61.3012	1/1:77:0,77,0:0:0:77,0:2748,0:-247.551,-23.1793,0,-247.551,-23.1793,-247.551	1/1:131:0,127,4:0:0:127,4:4458,144:-401.024,-38.2308,0,-389.274,-26.1213,-388.07	1/1:62:0,62,0:0:0:62,0:2193,0:-197.633,-18.6639,0,-197.633,-18.6639,-197.633	1/1:168:0,168,0:0:0:168,0:5974,0:-537.767,-50.573,0,-537.767,-50.573,-537.767	1/2:171:0,73,98:0:0:73,98:2605,3482:-496.44,-284.082,-262.107,-212.714,0,-183.213	1/2:73:0,42,31:0:0:42,31:1508,1116:-214.432,-91.4198,-78.7765,-123.371,0,-114.039	1/1:224:0,224,0:0:0:224,0:7993,0:-719.388,-67.4307,0,-719.388,-67.4307,-719.388	1/2:78:0,38,40:0:0:38,40:1368,1436:-229.1,-117.492,-106.053,-111.968,0,-99.9267	1/2:100:0,55,45:0:0:55,45:1968,1594:-290.669,-130.202,-113.645,-160.823,0,-147.276	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/2:16:0,9,7:0:0:9,7:320,252:-46.9969,-20.9217,-18.2125,-26.4331,0,-24.3259	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:324:0,323,1:0:0:323,1:11493,36:-1033.86,-97.2327,0,-1030.93,-93.9354,-1030.63	1/2:97:0,40,57:0:0:40,57:1432,2016:-281.328,-164.552,-152.511,-117.132,0,-99.9731	1/1:161:0,160,1:0:0:160,1:5697,36:-512.469,-48.1648,0,-509.532,-44.8676,-509.231	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:133:0,133,0:0:0:133,0:4737,0:-426.453,-40.037,0,-426.453,-40.037,-426.453	1/2:96:0,51,45:0:0:51,45:1832,1611:-281.174,-131.728,-116.376,-149.804,0,-136.257	1/2:105:0,58,47:0:0:58,47:2053,1680:-304.538,-137.313,-119.853,-167.581,0,-153.432	1/2:168:1,97,70:1:36:97,70:3448,2512:-482.573,-201.962,-175.7,-277.972,0,-259.837	1/1:137:0,137,0:0:0:137,0:4877,0:-439.079,-41.2411,0,-439.079,-41.2411,-439.079	1/1:105:0,104,1:0:0:104,1:3697,36:-332.345,-31.3071,0,-329.407,-28.0099,-329.106	1/1:101:0,101,0:0:0:101,0:3588,0:-323.119,-30.404,0,-323.119,-30.404,-323.119	1/2:106:0,50,56:0:0:50,56:1779,1997:-308.126,-163.144,-148.093,-145.338,0,-128.481	1/2:101:0,42,59:0:0:42,59:1500,2112:-294.867,-172.578,-159.935,-122.647,0,-104.886	1/2:157:0,73,84:0:0:73,84:2569,2986:-452.807,-243.683,-221.708,-209.477,0,-184.191	1/2:142:0,79,63:0:0:79,63:2828,2260:-415.316,-184.698,-160.916,-230.977,0,-212.012	1/2:12:0,7,5:0:0:7,5:252,176:-35.2464,-14.6799,-12.5727,-20.9217,0,-19.4166	1/1:91:0,91,0:0:0:91,0:3260,0:-293.621,-27.3937,0,-293.621,-27.3937,-293.621	1/2:44:0,19,25:0:0:19,25:680,892:-128.525,-73.0739,-67.3544,-55.8087,0,-48.2829	1/1:14:0,14,0:0:0:14,0:496,0:-44.9628,-4.21442,0,-44.9628,-4.21442,-44.9628	1/1:105:0,105,0:0:0:105,0:3746,0:-337.335,-31.6082,0,-337.335,-31.608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chr04	30132679	.	GAATTAT	GAGTTAT,AAGTTAC	179087	PASS	AB=0.462032,0.529246;ABP=51.8188,31.9692;AC=142,46;AF=0.755319,0.244681;AN=188;AO=6083,2082;CIGAR=2M1X4M,1X1M1X3M1X;DP=8236;DPB=8236;DPRA=0,1.19694;EPP=12636.5,4334.95;EPPR=0;GTI=0;LEN=1,7;MEANALT=2.28723,2.81818;MQM=59.9821,59.4529;MQMR=0;NS=94;NUMALT=2;ODDS=1.61313;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=217710,72667;QR=0;RO=0;RPL=6016,2060;RPP=12636.5,4334.95;RPPR=0;RPR=67,22;RUN=1,1;SAF=0,0;SAP=13212.1,4524.02;SAR=6083,2082;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:61:0,29,31:0:0:29,31:1040,1085:-173.089,-88.2588,-79.5289,-84.8247,0,-75.4928	1/1:69:0,69,0:0:0:69,0:2464,0:-222.014,-20.7711,0,-222.014,-20.7711,-222.014	1/1:168:0,167,0:0:0:167,0:5979,0:-537.963,-50.272,0,-537.963,-50.272,-537.963	1/1:152:0,151,0:0:0:151,0:5432,0:-488.731,-45.4555,0,-488.731,-45.4555,-488.731	1/2:73:0,26,46:0:0:26,46:936,1620:-208.238,-131.862,-124.035,-76.3729,0,-62.5255	1/2:37:0,19,18:0:0:19,18:675,631:-106.689,-51.6842,-45.9647,-55.3574,0,-49.9388	1/2:41:0,20,20:0:0:20,20:720,706:-115.61,-56.8564,-50.8358,-58.7495,0,-52.7289	1/2:103:0,46,56:0:0:46,56:1648,1963:-294.121,-159.719,-145.872,-134.435,0,-117.577	1/1:118:0,116,0:0:0:116,0:4160,0:-374.222,-34.9195,0,-374.222,-34.9195,-374.222	1/1:76:0,76,0:0:0:76,0:2732,0:-246.122,-22.8783,0,-246.122,-22.8783,-246.122	1/2:38:0,21,17:0:0:21,17:756,583:-109.36,-47.6643,-41.3427,-62.0456,0,-56.9281	1/2:122:0,53,68:0:0:53,68:1892,2397:-349.431,-195.182,-179.227,-154.352,0,-133.882	1/1:77:0,76,0:0:0:76,0:2705,0:-243.333,-22.8783,0,-243.333,-22.8783,-243.333	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/1:58:0,57,0:0:0:57,0:2052,0:-184.641,-17.1587,0,-184.641,-17.1587,-184.641	1/2:51:0,28,23:0:0:28,23:1008,817:-149.162,-66.9112,-58.4823,-82.6075,0,-75.6838	1/2:30:0,16,13:0:0:16,13:575,457:-84.1042,-37.1914,-32.3749,-46.9084,0,-42.995	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/2:32:0,21,11:0:0:21,11:756,396:-94.351,-32.6652,-26.3436,-62.0456,0,-58.7343	1/2:171:0,90,80:0:0:90,80:3232,2803:-491.591,-227.937,-200.844,-263.649,0,-239.566	1/2:163:0,97,63:0:0:97,63:3488,2191:-462.707,-178.128,-148.928,-284.622,0,-265.657	1/2:171:0,61,109:0:0:61,109:2175,3795:-485.869,-308.569,-290.206,-177.294,0,-144.482	1/1:120:0,120,0:0:0:120,0:4282,0:-385.558,-36.1236,0,-385.558,-36.1236,-385.558	1/1:69:0,64,4:0:0:64,4:2291,137:-206.119,-19.2659,0,-194.999,-8.09503,-193.795	1/1:148:0,145,1:0:0:145,1:5166,36:-464.727,-43.6494,0,-461.79,-40.7086,-461.489	1/1:182:0,181,0:0:0:181,0:6456,0:-580.497,-54.4864,0,-580.497,-54.4864,-580.497	1/2:206:0,91,113:0:0:91,113:3260,3924:-584.816,-318.942,-291.548,-265.95,0,-231.934	1/2:45:0,30,14:0:0:30,14:1076,493:-127.876,-40.1088,-31.0779,-87.7641,0,-83.5496	1/1:221:0,213,3:0:0:213,3:7611,93:-684.706,-64.1194,0,-677.243,-56.6606,-676.339	1/2:117:0,58,58:0:0:58,58:2070,2025:-333.474,-164.715,-147.256,-168.771,0,-151.311	1/2:86:0,45,40:0:0:45,40:1597,1412:-245.083,-114.965,-101.418,-130.112,0,-118.071	1/2:8:0,3,5:0:0:3,5:108,171:-23.0098,-14.1906,-13.2875,-9.17208,0,-7.66693	1/2:18:0,8,10:0:0:8,10:284,351:-52.0594,-28.9173,-26.5091,-23.4951,0,-20.4848	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:10:0,1,9:0:0:1,9:36,312:-28.6264,-25.6876,-25.3866,-3.29724,0,-0.587975	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:227:0,227,0:0:0:227,0:8143,0:-732.883,-68.3338,0,-732.883,-68.3338,-732.883	1/2:136:0,73,63:0:0:73,63:2624,2175:-391.111,-177.031,-155.056,-214.432,0,-195.467	1/1:54:0,53,0:0:0:53,0:1904,0:-171.278,-15.9546,0,-171.278,-15.9546,-171.278	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:84:0,81,3:0:0:81,3:2903,106:-261.151,-24.3834,0,-252.519,-15.3974,-251.616	1/2:36:0,20,16:0:0:20,16:705,547:-102.125,-44.7188,-38.6982,-57.7522,0,-52.9357	1/2:227:0,92,131:0:0:92,131:3303,4576:-641.69,-372.251,-344.557,-269.472,0,-230.037	1/2:57:0,30,26:0:0:30,26:1072,903:-160.84,-73.4301,-64.3992,-87.4404,0,-79.6136	1/1:55:0,55,0:0:0:55,0:1963,0:-176.942,-16.5567,0,-176.942,-16.5567,-176.942	1/1:103:0,100,0:0:0:100,0:3588,0:-322.766,-30.103,0,-322.766,-30.103,-322.766	1/1:177:0,176,1:0:0:176,1:6280,36:-564.934,-52.9813,0,-561.996,-49.684,-561.695	1/2:168:0,70,96:0:0:70,96:2512,3318:-474.409,-269.504,-248.432,-204.917,0,-176.018	1/2:124:0,47,77:0:0:47,77:1675,2671:-353.737,-217.202,-203.053,-136.888,0,-113.709	1/2:101:0,43,57:0:0:43,57:1548,1978:-287.116,-160.801,-147.857,-126.358,0,-109.199	1/2:142:0,75,67:0:0:75,67:2692,2359:-411.984,-192.393,-169.815,-219.947,0,-199.778	1/2:9:0,5,4:0:0:5,4:172,136:-25.2097,-11.2365,-9.73138,-14.3128,0,-13.1087	1/1:137:0,136,0:0:0:136,0:4880,0:-439.021,-40.9401,0,-439.021,-40.9401,-439.021	1/2:32:0,20,12:0:0:20,12:716,412:-92.1952,-33.7967,-27.7761,-58.7471,0,-55.1348	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:149:0,147,0:0:0:147,0:5233,0:-470.827,-44.2514,0,-470.827,-44.2514,-470.827	1/2:52:0,21,30:0:0:21,30:748,1045:-145.995,-85.0233,-78.7017,-61.0308,0,-51.9999	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:5:0,4,1:0:0:4,1:144,31:-14.588,-2.79842,-1.5943,-12.1095,0,-11.8085	1/2:77:0,36,40:0:0:36,40:1292,1401:-219.506,-114.113,-103.276,-105.513,0,-93.4722	1/1:122:0,122,0:0:0:122,0:4388,0:-395.089,-36.7257,0,-395.089,-36.7257,-395.089	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:156:0,75,81:0:0:75,81:2683,2828:-449.162,-230.378,-207.801,-219.137,0,-194.754	1/2:152:0,65,84:0:0:65,84:2310,2928:-426.359,-238.118,-218.551,-188.295,0,-163.008	1/1:56:0,51,4:0:0:51,4:1832,138:-164.812,-15.3525,0,-153.602,-4.15345,-152.398	1/1:63:0,61,0:0:0:61,0:2158,0:-194.25,-18.3628,0,-194.25,-18.3628,-194.25	1/1:148:0,143,1:0:0:143,1:5120,36:-460.621,-43.0473,0,-457.684,-40.0999,-457.383	1/1:121:0,121,0:0:0:121,0:4343,0:-391.043,-36.4246,0,-391.043,-36.4246,-391.043	1/1:25:0,25,0:0:0:25,0:887,0:-80.1481,-7.52575,0,-80.1481,-7.52575,-80.1481	1/1:42:0,42,0:0:0:42,0:1512,0:-136.375,-12.6433,0,-136.375,-12.6433,-136.375	1/2:52:0,28,24:0:0:28,24:1004,839:-150.444,-68.5512,-60.1224,-82.2461,0,-75.0214	1/2:20:0,16,4:0:0:16,4:567,144:-58.2844,-12.0986,-7.28211,-46.5442,0,-45.3401	1/2:141:0,55,86:0:0:55,86:1972,3026:-407.481,-246.639,-230.082,-161.198,0,-135.31	1/1:47:0,46,0:0:0:46,0:1652,0:-148.609,-13.8474,0,-148.609,-13.8474,-148.609	1/1:117:0,117,0:0:0:117,0:4187,0:-376.738,-35.2205,0,-376.738,-35.2205,-376.738	1/1:129:0,128,0:0:0:128,0:4571,0:-411.254,-38.5318,0,-411.254,-38.5318,-411.254	1/2:82:0,22,60:0:0:22,60:787,2102:-235.509,-171.333,-164.71,-64.532,0,-46.4702	1/1:76:0,73,1:0:0:73,1:2609,35:-234.7,-21.9752,0,-231.852,-19.1308,-231.551	1/2:12:0,2,10:0:0:2,10:72,344:-34.1587,-28.2812,-27.6791,-6.23466,0,-3.22436	1/2:111:0,56,54:0:0:56,54:1982,1883:-314.231,-152.787,-135.929,-161.475,0,-145.219	1/2:90:0,47,43:0:0:47,43:1688,1479:-258.121,-120.413,-106.265,-138.059,0,-125.114	1/1:295:0,294,1:0:0:294,1:10518,35:-946.185,-88.5028,0,-943.337,-85.3052,-943.036	1/1:66:0,65,0:0:0:65,0:2317,0:-208.429,-19.567,0,-208.429,-19.567,-208.429	1/1:73:0,73,0:0:0:73,0:2624,0:-236.407,-21.9752,0,-236.407,-21.9752,-236.407	1/2:43:0,19,24:0:0:19,24:676,850:-124.676,-69.5825,-63.8629,-55.4484,0,-48.2237	1/2:125:0,64,60:0:0:64,60:2292,2084:-356.195,-169.272,-150.006,-186.916,0,-168.854	1/1:27:0,27,0:0:0:27,0:957,0:-86.4439,-8.12781,0,-86.4439,-8.12781,-86.4439	1/1:64:0,63,0:0:0:63,0:2268,0:-204.199,-18.9649,0,-204.199,-18.9649,-204.199	1/1:77:0,77,0:0:0:77,0:2772,0:-249.72,-23.1793,0,-249.72,-23.1793,-249.72	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/2:89:0,34,52:0:0:34,52:1209,1839:-248.306,-149.781,-139.546,-98.544,0,-82.8904	1/2:76:0,19,57:0:0:19,57:675,1985:-216.608,-161.604,-155.884,-55.3574,0,-38.1987	1/1:91:0,90,0:0:0:90,0:3204,0:-288.341,-27.0927,0,-288.341,-27.0927,-288.341	1/1:114:0,113,0:0:0:113,0:4051,0:-364.525,-34.0164,0,-364.525,-34.0164,-364.525
chr04	30173827	.	G	T	139194	PASS	AB=0.494074;ABP=4.40012;AC=142;AF=0.755319;AN=188;AO=7115;CIGAR=1X;DP=9436;DPB=9436;DPRA=0;EPP=15453;EPPR=5029.97;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9889;MQMR=59.9922;NS=94;NUMALT=1;ODDS=1.01463;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242083;QR=82966;RO=2315;RPL=7115;RPP=15453;RPPR=5029.97;RPR=0;RUN=1;SAF=0;SAP=15453;SAR=7115;SRF=0;SRP=5029.97;SRR=2315;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:22,28:22:779:28:944:-70.209,0,-55.3806	1/1:210:0,210:0:0:210:6956:-626.114,-63.2163,0	1/1:165:0,164:0:0:164:5479:-492.88,-49.3689,0	1/1:170:0,170:0:0:170:5889:-530.12,-51.1751,0	0/1:79:41,38:41:1446:38:1279:-91.6173,0,-106.651	0/1:31:13,18:13:464:18:595:-44.5269,0,-32.7656	0/1:158:79,79:79:2828:79:2758:-200.895,0,-207.196	0/1:143:73,70:73:2616:70:2362:-169.78,0,-192.64	1/1:121:0,121:0:0:121:4110:-370.081,-36.4246,0	1/1:117:0,117:0:0:117:3992:-359.467,-35.2205,0	0/1:34:12,22:12:428:22:758:-58.2992,0,-28.6238	0/1:61:30,31:30:1076:31:1063:-77.6082,0,-78.79	1/1:63:0,63:0:0:63:2119:-190.966,-18.9649,0	1/1:51:0,51:0:0:51:1783:-160.747,-15.3525,0	1/1:76:0,76:0:0:76:2675:-240.992,-22.8783,0	0/1:50:23,27:23:828:27:869:-63.4496,0,-59.7926	0/1:46:26,19:26:932:19:631:-43.1941,0,-70.2927	1/1:84:0,84:0:0:84:2802:-252.407,-25.2865,0	0/1:39:18,21:18:648:21:673:-49.127,0,-46.9117	0/1:208:115,93:115:4128:93:3088:-215.524,0,-309.089	0/1:147:71,76:71:2552:76:2638:-193.408,0,-185.679	0/1:138:105,33:105:3772:33:1044:-52.7005,0,-298.136	1/1:125:0,125:0:0:125:4186:-376.917,-37.6288,0	0/1:144:14,130:14:500:130:4574:-367.286,0,-1.98786	1/1:54:0,54:0:0:54:1846:-166.409,-16.2556,0	1/1:278:1,277:1:36:277:9360:-838.787,-80.0881,0	0/1:192:102,90:102:3637:90:3097:-221.154,0,-269.736	0/1:25:6,19:6:216:19:654:-51.6518,0,-12.2648	1/1:206:0,206:0:0:206:6935:-624.226,-62.0122,0	0/1:141:63,77:63:2264:77:2550:-187.38,0,-161.666	0/1:113:72,41:72:2584:41:1397:-91.999,0,-198.792	0/1:17:7,10:7:252:10:345:-26.2633,0,-17.9114	0/1:14:2,12:2:72:12:417:-33.6458,0,-2.6223	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	1/1:194:0,194:0:0:194:6754:-607.933,-58.3998,0	0/1:198:98,100:98:3516:100:3395:-246.156,0,-257.045	1/1:57:0,57:0:0:57:1911:-172.253,-17.1587,0	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:133:3,130:3:93:130:4418:-389.11,-31.3603,0	0/1:29:10,19:10:356:19:600:-45.5652,0,-23.6514	0/1:163:104,59:104:3728:59:1973:-128.762,0,-286.653	0/1:72:43,29:43:1544:29:1032:-71.5193,0,-117.579	1/1:58:0,58:0:0:58:2023:-182.338,-17.4597,0	1/1:123:0,123:0:0:123:4149:-373.587,-37.0267,0	1/1:151:2,149:2:72:149:4997:-443.033,-38.6188,0	0/1:121:69,52:69:2484:52:1837:-129.184,0,-187.374	0/1:132:74,58:74:2660:58:2011:-141.52,0,-199.909	0/1:129:65,64:65:2340:64:2179:-157.533,0,-172.026	0/1:229:122,107:122:4380:107:3675:-261.999,0,-325.436	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	1/1:143:0,143:0:0:143:4958:-446.369,-43.0473,0	0/1:61:25,36:25:900:36:1254:-94.7953,0,-62.9582	1/1:26:0,26:0:0:26:842:-76.0733,-7.82678,0	1/1:141:0,141:0:0:141:4834:-435.212,-42.4452,0	0/1:67:32,34:32:1137:34:1224:-90.2392,0,-82.4093	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	0/1:19:12,7:12:432:7:237:-15.9395,0,-33.5016	0/1:60:15,45:15:536:45:1552:-121.901,0,-30.513	1/1:95:0,95:0:0:95:3238:-291.636,-28.5979,0	1/1:9:0,9:0:0:9:275:-25.0469,-2.70927,0	0/1:215:117,97:117:4188:97:3118:-216.203,0,-312.47	0/1:191:89,102:89:3196:102:3471:-255.1,0,-230.366	1/1:59:2,57:2:72:57:1950:-168.929,-10.924,0	1/1:81:0,81:0:0:81:2798:-252.055,-24.3834,0	1/1:152:0,152:0:0:152:5195:-467.69,-45.7566,0	1/1:195:1,194:1:36:194:6342:-567.28,-55.1026,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:114:0,114:0:0:114:3948:-355.51,-34.3174,0	0/1:106:58,48:58:2084:48:1598:-112.185,0,-155.921	0/1:9:4,5:4:144:5:165:-12.4643,0,-10.6043	0/1:164:76,88:76:2720:88:2956:-216.896,0,-195.671	1/1:71:0,71:0:0:71:2435:-219.397,-21.3731,0	1/1:145:0,145:0:0:145:4995:-449.697,-43.6494,0	1/1:144:0,144:0:0:144:4949:-445.556,-43.3483,0	0/1:94:48,46:48:1724:46:1480:-105.173,0,-127.149	1/1:125:3,122:3:108:122:4112:-360.182,-27.5536,0	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/1:167:88,79:88:3152:79:2701:-193.055,0,-233.633	0/1:123:60,63:60:2156:63:2150:-156.729,0,-157.28	1/1:269:0,269:0:0:269:9289:-835.991,-80.9771,0	1/1:93:0,93:0:0:93:3172:-285.7,-27.9958,0	1/1:89:0,89:0:0:89:3049:-274.629,-26.7917,0	0/1:95:45,50:45:1601:50:1697:-124.408,0,-115.78	0/1:143:71,72:71:2552:72:2542:-185.981,0,-186.883	1/1:54:0,54:0:0:54:1796:-161.907,-16.2556,0	1/1:72:0,72:0:0:72:2520:-227.047,-21.6742,0	1/1:71:0,71:0:0:71:2479:-223.361,-21.3731,0	1/1:44:0,44:0:0:44:1471:-132.668,-13.2453,0	0/1:63:38,25:38:1349:25:885:-61.0016,0,-102.743	0/1:60:36,24:36:1292:24:807:-54.8744,0,-98.522	1/1:81:2,79:2:72:79:2678:-234.418,-17.5467,0	1/1:100:0,99:0:0:99:3315:-298.2,-29.802,0
chr04	30175350	.	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chr04	30237933	.	GATGT	AATGT,AATGC	186027	PASS	AB=0.513155,0.484291;ABP=8.89463,11.4017;AC=143,45;AF=0.760638,0.239362;AN=188;AO=6911,1912;CIGAR=1X4M,1X3M1X;DP=8851;DPB=9498.2;DPRA=0,1.15874;EPP=15010.1,4154.87;EPPR=5.18177;GTI=2;LEN=1,5;MEANALT=1.87234,2.26316;MQM=59.7696,58.7458;MQMR=60;NS=94;NUMALT=2;ODDS=0.88827;PAIRED=0,0;PAIREDR=0;PAO=1617.5,1618.5;PQA=44129.5,44165.5;PQR=0;PRO=0;QA=245193,65732;QR=36;RO=1;RPL=1,0;RPP=15001.4,4154.87;RPPR=5.18177;RPR=6910,1912;RUN=1,1;SAF=1,0;SAP=15001.4,4154.87;SAR=6910,1912;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,28,15:0:0:28,15:983,517:-120.911,-40.9918,-32.563,-78.9361,0,-74.4206	1/1:211:0,211,0:0:0:211,0:7513,0:-676.155,-63.5173,0,-676.155,-63.5173,-676.155	1/1:51:0,51,0:0:0:51,0:1798,0:-162.099,-15.3525,0,-162.099,-15.3525,-162.099	1/1:251:0,250,0:0:0:250,0:8878,0:-798.607,-75.2575,0,-798.607,-75.2575,-798.607	1/2:63:0,34,29:0:0:34,29:1208,985:-177.471,-79.0491,-68.8141,-97.6232,0,-88.8933	1/2:67:0,26,41:0:0:26,41:919,1428:-187.957,-113.142,-105.316,-71.9576,0,-59.6154	1/2:195:0,101,94:0:0:101,94:3589,3297:-556.606,-264.181,-233.777,-288.523,0,-260.226	1/2:178:0,90,88:0:0:90,88:3203,3015:-500.396,-239.378,-212.285,-255.8,0,-229.31	1/1:79:0,77,2:0:0:77,2:2731,70:-245.518,-23.1793,0,-239.823,-17.2242,-239.221	1/1:130:0,127,0:0:0:127,0:4488,0:-403.725,-38.2308,0,-403.725,-38.2308,-403.725	1/2:54:0,22,32:0:0:22,32:779,1097:-149.642,-86.2235,-79.6008,-60.7083,0,-51.0753	1/2:60:0,28,32:0:0:28,32:987,1093:-166.48,-86.1545,-77.7257,-77.9293,0,-68.2963	1/1:56:0,56,0:0:0:56,0:1999,0:-180.181,-16.8577,0,-180.181,-16.8577,-180.181	1/1:81:0,81,0:0:0:81,0:2829,0:-254.785,-24.3834,0,-254.785,-24.3834,-254.785	1/1:35:0,35,0:0:0:35,0:1242,0:-112.022,-10.5361,0,-112.022,-10.5361,-112.022	1/2:46:0,28,18:0:0:28,18:996,619:-129.381,-48.2884,-39.8595,-79.1491,0,-73.7305	1/2:78:0,44,34:0:0:44,34:1576,1172:-221.18,-92.7165,-79.4711,-126.039,0,-115.804	1/1:56:0,56,0:0:0:56,0:1948,0:-175.586,-16.8577,0,-175.586,-16.8577,-175.586	1/2:19:0,9,9:0:0:9,9:324,307:-49.4565,-23.1062,-20.3969,-24.6491,0,-21.9399	1/2:252:0,148,104:0:0:148,104:5294,3586:-717.89,-286.336,-241.784,-426.738,0,-395.431	1/2:102:0,47,53:0:0:47,53:1662,1772:-276.609,-141.273,-127.125,-133.243,0,-117.289	1/2:101:0,31,70:0:0:31,70:1107,2343:-274.723,-184.49,-175.158,-85.193,0,-64.1209	1/1:96:0,96,0:0:0:96,0:3403,0:-306.312,-28.8989,0,-306.312,-28.8989,-306.312	1/1:165:0,163,1:0:0:163,1:5772,36:-518.988,-49.0679,0,-516.051,-46.3712,-515.75	1/1:72:0,72,0:0:0:72,0:2562,0:-230.769,-21.6742,0,-230.769,-21.6742,-230.769	1/1:318:1,317,0:1:36:317,0:11238,0:-1007.34,-92.1293,0,-1007.64,-95.4265,-1010.58	1/2:128:0,55,73:0:0:55,73:1942,2563:-361.831,-203.717,-187.161,-153.536,0,-131.561	1/2:33:0,17,16:0:0:17,16:604,559:-93.9899,-44.8071,-39.6896,-48.5504,0,-43.7339	1/1:243:0,242,1:0:0:242,1:8580,36:-771.745,-72.8493,0,-768.809,-69.553,-768.508	1/2:167:0,89,78:0:0:89,78:3163,2682:-471.894,-214.172,-187.38,-254.238,0,-230.758	1/2:94:0,51,43:0:0:51,43:1784,1470:-261.499,-116.404,-101.051,-142.245,0,-129.301	1/2:5:0,3,2:0:0:3,2:108,71:-13.9925,-5.53827,-4.63518,-8.36977,0,-7.76771	1/2:22:0,13,9:0:0:13,9:464,318:-62.884,-25.1618,-21.2484,-37.0453,0,-34.336	1/1:8:0,8,0:0:0:8,0:275,0:-25.0835,-2.40824,0,-25.0835,-2.40824,-25.0835	1/2:5:0,3,2:0:0:3,2:108,70:-14.334,-5.7143,-4.81121,-8.73079,0,-8.12873	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:153:0,152,0:0:0:152,0:5378,0:-483.785,-45.7566,0,-483.785,-45.7566,-483.785	1/2:164:0,83,81:0:0:83,81:2956,2762:-461.841,-220.929,-195.943,-237.834,0,-213.451	1/1:52:0,52,0:0:0:52,0:1838,0:-165.698,-15.6536,0,-165.698,-15.6536,-165.698	1/1:5:0,5,0:0:0:5,0:176,0:-16.1834,-1.50515,0,-16.1834,-1.50515,-16.1834	1/1:194:0,192,2:0:0:192,2:6810,68:-612.461,-57.7978,0,-606.945,-52.0322,-606.343	1/2:21:0,11,10:0:0:11,10:392,348:-58.8156,-26.9577,-23.6463,-30.6148,0,-27.6045	1/2:134:0,63,71:0:0:63,71:2243,2430:-376.653,-193.888,-174.923,-179.526,0,-158.153	1/2:44:0,21,23:0:0:21,23:730,802:-122.274,-62.9798,-56.6582,-57.1196,0,-50.1959	1/1:41:0,41,0:0:0:41,0:1463,0:-131.892,-12.3422,0,-131.892,-12.3422,-131.892	1/1:65:0,65,0:0:0:65,0:2308,0:-207.978,-19.567,0,-207.978,-19.567,-207.978	1/1:175:0,173,2:0:0:173,2:6168,71:-554.866,-52.0782,0,-549.271,-46.1387,-548.669	1/2:160:0,91,69:0:0:91,69:3175,2385:-446.054,-187.892,-160.498,-252.316,0,-231.545	1/2:123:0,73,50:0:0:73,50:2581,1736:-349.616,-139.517,-117.542,-208.576,0,-193.524	1/2:87:0,46,41:0:0:46,41:1640,1400:-242.803,-109.175,-95.3272,-129.333,0,-116.991	1/2:177:0,86,90:0:0:86,90:3053,3131:-495.533,-246.872,-220.983,-241.367,0,-214.274	1/2:6:0,4,2:0:0:4,2:140,70:-16.6333,-5.56346,-4.35934,-11.0186,0,-10.4166	1/1:112:0,112,0:0:0:112,0:3994,0:-359.523,-33.7154,0,-359.523,-33.7154,-359.523	1/2:110:0,60,49:0:0:60,49:2125,1690:-308.368,-135.281,-117.219,-171.361,0,-156.611	1/1:21:0,21,0:0:0:21,0:732,0:-66.1414,-6.32163,0,-66.1414,-6.32163,-66.1414	1/1:125:0,125,0:0:0:125,0:4438,0:-399.53,-37.6288,0,-399.53,-37.6288,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chr04	30237945	.	C	A	31148.2	PASS	AB=0.483505;ABP=12.3945;AC=45;AF=0.239362;AN=188;AO=1934;CIGAR=1X;DP=8987;DPB=8987;DPRA=1.11101;EPP=4202.64;EPPR=15311.9;GTI=1;LEN=1;MEANALT=1.05556;MQM=58.7234;MQMR=59.7362;NS=94;NUMALT=1;ODDS=0.0789811;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68366;QR=251780;RO=7050;RPL=0;RPP=4202.64;RPPR=15303.2;RPR=1934;RUN=1;SAF=0;SAP=4202.64;SAR=1934;SRF=1;SRP=15303.2;SRR=7049;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:30,14:30:1062:14:504:-32.45,0,-82.6195	0/0:214:214,0:214:7638:0:0:0,-64.4204,-687.403	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.269	0/0:257:257,0:257:9175:0:0:0,-77.3647,-825.596	0/1:65:35,30:35:1260:30:1044:-74.6869,0,-94.137	0/1:67:26,40:26:936:40:1411:-107.006,0,-64.2858	0/1:199:104,94:104:3732:94:3334:-240.074,0,-276.107	0/1:186:91,95:91:3256:95:3340:-244.683,0,-237.267	0/0:78:76,2:76:2701:2:72:0,-16.6436,-236.423	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.218	0/1:55:22,33:22:788:33:1180:-89.8946,0,-54.6881	0/1:60:28,32:28:1000:32:1087:-79.9965,0,-72.2536	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.631	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.018	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.35	0/1:48:30,18:30:1065:18:632:-42.7573,0,-81.7088	0/1:79:45,34:45:1603:34:1220:-86.2896,0,-120.768	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.106	0/1:20:11,9:11:372:9:324:-23.4853,0,-27.7828	0/1:257:153,104:153:5492:104:3712:-256.769,0,-416.936	0/1:104:48,56:48:1697:56:1972:-146.363,0,-121.705	0/1:102:33,69:33:1184:69:2455:-190.304,0,-76.1623	0/0:95:95,0:95:3399:0:0:0,-28.5978,-305.962	0/0:169:168,1:168:6008:1:36:0,-47.2758,-537.161	0/0:73:73,0:73:2585:0:0:0,-21.9752,-232.897	0/0:319:319,0:319:11332:0:0:0,-96.0286,-1019.61	0/1:127:57,70:57:2027:70:2480:-184.896,0,-144.467	0/1:34:18,16:18:644:16:564:-40.8553,0,-48.0228	0/0:248:247,1:247:8845:1:36:0,-71.0582,-792.207	0/1:168:88,80:88:3164:80:2828:-204.051,0,-234.404	0/1:95:51,44:51:1836:44:1560:-112.073,0,-136.834	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:22:13,9:13:460:9:311:-21.6856,0,-35.0842	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:155:155,0:155:5548:0:0:0,-46.6596,-499.423	0/1:165:82,83:82:2921:83:2929:-214.111,0,-213.449	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.277	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7889	0/0:194:192,2:192:6827:2:63:0,-52.4167,-608.438	0/1:22:11,11:11:396:11:392:-28.9506,0,-29.3585	0/1:138:66,72:66:2349:72:2515:-184.968,0,-170.096	0/1:47:24,23:24:856:23:820:-59.9663,0,-63.2127	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.738	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.892	0/0:178:176,2:176:6283:2:72:0,-46.9861,-558.783	0/1:161:91,70:91:3237:70:2508:-177.468,0,-243.066	0/1:124:74,50:74:2632:50:1775:-122.642,0,-199.656	0/1:89:48,41:48:1724:41:1455:-104.377,0,-128.651	0/1:178:87,91:87:3113:91:3219:-235.938,0,-226.754	0/1:6:4,2:4:144:2:72:-5.0297,0,-11.5074	0/0:114:114,0:114:4068:0:0:0,-34.3174,-366.299	0/1:110:60,50:60:2156:50:1780:-127.227,0,-161.185	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:123:123,0:123:4378:0:0:0,-37.0267,-394.191	0/1:36:14,22:14:500:22:784:-59.9695,0,-34.4991	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7666	0/1:9:7,2:7:252:2:72:-4.12554,0,-20.3197	0/1:84:35,49:35:1256:49:1757:-133.09,0,-87.7877	0/0:89:89,0:89:3151:0:0:0,-26.7917,-283.806	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:220:220,0:220:7849:0:0:0,-66.2266,-706.263	0/1:144:77,67:77:2737:67:2399:-172.591,0,-203.214	0/0:79:78,1:78:2792:1:36:0,-20.1831,-247.918	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.754	0/0:181:181,0:181:6449:0:0:0,-54.4864,-580.398	0/0:174:174,0:174:6228:0:0:0,-52.3792,-560.538	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8426	0/0:89:87,2:87:3107:2:72:0,-19.9549,-273.02	0/1:63:26,37:26:924:37:1316:-99.7367,0,-64.5128	0/1:26:12,14:12:432:14:496:-37.1427,0,-31.3944	0/1:100:49,51:49:1744:51:1773:-129.748,0,-127.14	0/0:80:80,0:80:2851:0:0:0,-24.0824,-256.453	0/0:77:77,0:77:2740:0:0:0,-23.1793,-246.838	0/0:184:184,0:184:6598:0:0:0,-55.3895,-593.556	0/1:134:90,44:90:3228:44:1559:-100.248,0,-250.391	0/0:107:106,1:106:3784:1:36:0,-28.6119,-337.152	0/1:10:6,4:6:216:4:144:-10.1933,0,-16.7802	0/1:138:65,73:65:2321:73:2538:-186.993,0,-167.597	0/1:135:84,51:84:3004:51:1777:-119.526,0,-229.166	0/0:279:276,2:276:9854:2:72:0,-77.2097,-879.736	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.029	0/0:54:54,0:54:1932:0:0:0,-16.2556,-173.524	0/1:65:25,40:25:892:40:1419:-108.379,0,-61.028	0/1:135:80,55:80:2855:55:1939:-134.068,0,-216.54	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.531	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.307	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.723	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9844	0/1:59:28,31:28:1004:31:1075:-79.2161,0,-72.9142	0/1:51:15,36:15:540:36:1260:-98.2791,0,-33.584	0/0:113:113,0:113:4028:0:0:0,-34.0164,-362.698	0/0:74:74,0:74:2619:0:0:0,-22.2762,-235.95
chr04	30237988	.	T	C	151371	PASS	AB=0.514918;ABP=10.7848;AC=143;AF=0.760638;AN=188;AO=7125;CIGAR=1X;DP=9092;DPB=9092;DPRA=0;EPP=15474.8;EPPR=4272.13;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.7061;MQMR=58.7518;NS=94;NUMALT=1;ODDS=0.419483;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=254224;QR=70348;RO=1966;RPL=7125;RPP=15474.8;RPPR=4272.13;RPR=0;RUN=1;SAF=0;SAP=15474.8;SAR=7125;SRF=0;SRP=4272.13;SRR=1966;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:16,30:16:572:30:1049:-80.8467,0,-37.9633	1/1:218:0,218:0:0:218:7771:-699.38,-65.6245,0	1/1:54:0,54:0:0:54:1930:-173.968,-16.2556,0	1/1:261:1,260:1:36:260:9231:-826.892,-74.9706,0	0/1:65:30,35:30:1080:35:1256:-93.7768,0,-77.9101	0/1:69:41,28:41:1463:28:1004:-69.903,0,-111.172	0/1:200:97,103:97:3465:103:3687:-271.818,0,-251.586	0/1:191:95,96:95:3374:96:3406:-249.253,0,-246.221	1/1:79:2,77:2:72:77:2745:-240.38,-16.9446,0	1/1:133:0,133:0:0:133:4741:-426.839,-40.037,0	0/1:55:33,22:33:1188:22:788:-54.6881,0,-90.6149	0/1:61:33,28:33:1184:28:1004:-72.313,0,-88.3967	1/1:56:0,56:0:0:56:2008:-180.991,-16.8577,0	1/1:82:0,82:0:0:82:2929:-263.836,-24.6845,0	1/1:35:0,35:0:0:35:1256:-113.343,-10.5361,0	0/1:45:17,28:17:612:28:1008:-77.4885,0,-41.8671	0/1:80:34,46:34:1220:46:1647:-124.425,0,-85.9886	1/1:59:0,59:0:0:59:2124:-191.422,-17.7608,0	0/1:20:9,11:9:324:11:396:-29.9617,0,-23.4853	0/1:263:106,157:106:3789:157:5600:-424.788,0,-261.83	0/1:103:54,49:54:1940:49:1764:-128.036,0,-143.751	0/1:103:70,33:70:2505:33:1180:-75.501,0,-194.627	1/1:96:0,96:0:0:96:3440:-309.681,-28.8989,0	1/1:170:1,169:1:36:169:6038:-539.895,-47.5768,0	1/1:75:0,75:0:0:75:2680:-241.444,-22.5773,0	1/1:316:0,316:0:0:316:11240:-1011.16,-95.1255,0	0/1:129:73,56:73:2613:56:2016:-142.875,0,-196.255	0/1:34:16,18:16:572:18:638:-47.5018,0,-41.5784	1/1:251:1,250:1:36:250:8841:-791.932,-71.9613,0	0/1:170:80,90:80:2872:90:3228:-239.561,0,-207.406	0/1:95:44,51:44:1564:51:1828:-136.164,0,-112.433	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:23:9,14:9:324:14:504:-38.7449,0,-22.5353	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:159:0,159:0:0:159:5682:-511.476,-47.8638,0	0/1:169:85,84:85:3044:84:3001:-219.367,0,-223.245	1/1:55:0,55:0:0:55:1936:-174.514,-16.5567,0	1/1:6:0,6:0:0:6:212:-19.4232,-1.80618,0	1/1:199:2,197:2:72:197:7019:-624.848,-53.0682,0	0/1:23:12,11:12:432:11:392:-28.6948,0,-32.2508	0/1:139:73,66:73:2605:66:2364:-171.145,0,-192.744	0/1:48:25,23:25:900:23:828:-60.3947,0,-66.8631	1/1:44:0,44:0:0:44:1568:-141.297,-13.2453,0	1/1:65:0,65:0:0:65:2332:-210.135,-19.567,0	1/1:183:2,181:2:68:181:6431:-572.287,-48.7434,0	0/1:165:73,92:73:2612:92:3281:-245.817,0,-185.62	0/1:125:50,74:50:1800:74:2652:-201.217,0,-124.532	0/1:87:41,46:41:1472:46:1641:-121.785,0,-106.452	0/1:183:93,90:93:3340:90:3197:-232.804,0,-245.282	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.0297	1/1:115:0,115:0:0:115:4132:-372.055,-34.6185,0	0/1:109:49,60:49:1741:60:2145:-160.503,0,-124.11	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:127:0,127:0:0:127:4480:-403.367,-38.2308,0	0/1:38:23,15:23:816:15:536:-37.0988,0,-62.2455	1/1:24:0,24:0:0:24:849:-76.7269,-7.22472,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12554	0/1:84:50,34:50:1792:34:1224:-85.1805,0,-136.244	1/1:90:0,90:0:0:90:3224:-289.097,-27.0927,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:217:0,217:0:0:217:7737:-696.309,-65.3235,0	0/1:145:66,79:66:2368:79:2817:-210.109,0,-169.502	1/1:83:1,82:1:36:82:2948:-261.946,-21.3872,0	1/1:53:0,53:0:0:53:1904:-171.633,-15.9546,0	1/1:183:0,183:0:0:183:6548:-589.302,-55.0885,0	1/1:177:0,177:0:0:177:6299:-566.962,-53.2823,0	1/1:22:0,22:0:0:22:792:-71.6041,-6.62266,0	1/1:89:2,87:2:72:87:3124:-274.549,-19.9549,0	0/1:63:37,26:37:1332:26:936:-65.5946,0,-101.171	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.5311	0/1:104:54,50:54:1925:50:1796:-130.569,0,-142.218	1/1:80:0,80:0:0:80:2872:-258.086,-24.0824,0	1/1:80:0,80:0:0:80:2864:-257.981,-24.0824,0	1/1:184:0,184:0:0:184:6540:-588.349,-55.3895,0	0/1:138:46,92:46:1656:92:3293:-254.962,0,-107.771	1/1:106:1,105:1:36:105:3734:-332.657,-28.3109,0	0/1:11:4,7:4:140:7:248:-19.3485,0,-9.54484	0/1:143:75,68:75:2666:68:2394:-172.657,0,-196.991	0/1:136:53,83:53:1881:83:2958:-225.432,0,-128.591	1/1:282:3,279:3:108:279:9933:-883.759,-74.8157,0	1/1:95:0,95:0:0:95:3393:-305.559,-28.5979,0	1/1:56:0,56:0:0:56:1985:-178.29,-16.8577,0	0/1:65:40,25:40:1440:25:896:-61.3887,0,-110.269	0/1:135:55,80:55:1965:80:2876:-218.057,0,-136.403	1/1:43:0,43:0:0:43:1533:-138.256,-12.9443,0	1/1:63:0,63:0:0:63:2249:-202.596,-18.9649,0	1/1:49:0,49:0:0:49:1764:-159.04,-14.7505,0	1/1:29:0,29:0:0:29:1040:-93.9128,-8.72987,0	0/1:60:32,28:32:1144:28:996:-71.8924,0,-85.0128	0/1:51:36,15:36:1288:15:540:-33.584,0,-100.794	1/1:112:0,112:0:0:112:3993:-358.992,-33.7154,0	1/1:73:0,73:0:0:73:2607:-234.874,-21.9752,0
chr04	30355560	.	T	C	31423.5	PASS	AB=0.536907;ABP=43.402;AC=44;AF=0.236559;AN=186;AO=1857;CIGAR=1X;DP=7199;DPB=7199;DPRA=1.10225;EPP=4035.43;EPPR=11603;GTI=0;LEN=1;MEANALT=1;MQM=59.9962;MQMR=59.9944;NS=93;NUMALT=1;ODDS=0.545793;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66184;QR=190796;RO=5342;RPL=1857;RPP=4035.43;RPPR=11603;RPR=0;RUN=1;SAF=1857;SAP=4035.43;SAR=0;SRF=5342;SRP=11603;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:19,20:19:680:20:720:-53.3886,0,-49.789	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:144:144,0:144:5105:0:0:0,-43.3483,-459.591	0/1:65:32,33:32:1148:33:1175:-86.49,0,-84.0629	0/1:51:19,32:19:684:32:1148:-88.2773,0,-46.5378	0/1:102:55,47:55:1976:47:1680:-120.782,0,-147.41	0/1:117:66,51:66:2368:51:1804:-127.419,0,-178.158	0/0:96:96,0:96:3447:0:0:0,-28.8989,-310.441	0/0:105:105,0:105:3753:0:0:0,-31.6081,-337.969	0/1:46:24,22:24:852:22:777:-56.403,0,-63.153	0/1:90:41,49:41:1476:49:1752:-130.871,0,-106.043	0/0:81:81,0:81:2883:0:0:0,-24.3834,-259.707	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.405	0/1:76:32,44:32:1140:44:1559:-117.723,0,-80.0309	0/1:54:32,22:32:1113:22:783:-54.5373,0,-84.2192	0/0:43:43,0:43:1501:0:0:0,-12.9443,-135.381	0/1:50:23,27:23:815:27:963:-71.9344,0,-58.6193	0/1:165:94,71:94:3376:71:2548:-179.9,0,-254.385	0/1:86:35,51:35:1252:51:1823:-138.462,0,-87.0965	0/1:151:51,100:51:1818:100:3585:-277.4,0,-118.444	0/0:133:132,1:132:4731:1:36:0,-36.4387,-422.341	0/0:78:71,7:71:2556:7:248:0,-0.816145,-207.625	0/1:72:32,40:32:1152:40:1436:-107.864,0,-82.316	0/0:172:172,0:172:6145:0:0:0,-51.7772,-553.149	0/1:105:42,63:42:1508:63:2227:-169.083,0,-104.406	0/1:27:16,11:16:576:11:392:-27.4922,0,-44.0472	0/0:154:154,0:154:5524:0:0:0,-46.3586,-497.284	0/1:90:45,45:45:1620:45:1606:-117.736,0,-118.997	0/1:105:52,53:52:1859:53:1892:-138.95,0,-135.981	0/1:10:7,3:7:252:3:104:-6.69251,0,-20.0187	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:158:158,0:158:5641:0:0:0,-47.5627,-507.811	0/1:111:42,69:42:1512:69:2470:-189.138,0,-102.96	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	.:.:.:.:.:.:.:.	0/0:124:122,2:122:4360:2:72:0,-30.491,-385.736	0/1:41:17,24:17:608:24:860:-65.3796,0,-42.7098	0/1:138:70,68:70:2495:68:2421:-176.602,0,-183.261	0/1:67:28,39:28:1004:39:1404:-106.49,0,-70.5069	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/0:121:120,1:120:4277:1:36:0,-32.8264,-381.509	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.584	0/1:141:63,78:63:2249:78:2769:-207.005,0,-160.226	0/1:78:29,49:29:1040:49:1758:-135.024,0,-70.434	0/1:46:18,28:18:644:28:1008:-77.189,0,-44.4432	0/1:66:28,38:28:995:38:1359:-102.742,0,-69.996	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:62:62,0:62:2198:0:0:0,-18.6639,-198.085	0/1:84:37,47:37:1324:47:1673:-125.569,0,-94.1756	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:94:93,1:93:3344:1:36:0,-24.6985,-297.578	0/1:75:40,35:40:1431:35:1252:-90.4078,0,-106.51	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:8:7,1:7:248:1:21:0,-0.308294,-20.5642	0/1:76:44,32:44:1571:32:1144:-80.3912,0,-118.803	0/0:106:104,2:104:3715:2:68:0,-25.4515,-328.094	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:106:106,0:106:3772:0:0:0,-31.9092,-339.679	0/1:112:63,49:63:2245:49:1725:-121.816,0,-168.596	0/0:61:57,4:57:2033:4:135:0,-5.88032,-170.758	0/0:55:54,1:54:1905:1:36:0,-12.9584,-168.123	0/0:122:121,1:121:4285:1:36:0,-33.1274,-382.207	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:28:28,0:28:987:0:0:0,-8.42884,-89.143	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:40:20,20:20:712:20:716:-52.7265,0,-52.3655	0/1:37:14,23:14:496:23:817:-62.7125,0,-33.8362	0/1:114:52,62:52:1854:62:2191:-163.135,0,-132.821	0/0:56:56,0:56:1984:0:0:0,-16.8577,-178.832	0/0:155:155,0:155:5551:0:0:0,-46.6596,-499.713	0/0:133:133,0:133:4775:0:0:0,-40.037,-429.905	0/1:86:35,51:35:1260:51:1800:-136.39,0,-87.8169	0/0:94:92,2:92:3269:2:68:0,-21.8391,-287.97	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/1:68:28,40:28:1004:40:1421:-107.715,0,-70.2058	0/1:130:60,70:60:2128:70:2494:-185.579,0,-152.652	0/0:169:169,0:169:6056:0:0:0,-50.8741,-545.142	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.169	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/1:39:19,20:19:672:20:716:-53.0275,0,-49.0667	0/1:113:52,61:52:1851:61:2179:-162.359,0,-132.853	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:103:103,0:103:3664:0:0:0,-31.0061,-329.966	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.711	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:114:46,68:46:1618:68:2409:-182.747,0,-111.588	0/1:104:34,70:34:1224:70:2508:-194.665,0,-79.1599	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:91:90,1:90:3207:1:36:0,-23.7955,-285.255
chr04	30381941	.	A	G	15334.2	PASS	AB=0.376387;ABP=397.589;AC=45;AF=0.239362;AN=188;AO=1146;CIGAR=1X;DP=7244;DPB=7244;DPRA=0.958412;EPP=2491.52;EPPR=13240.3;GTI=5;LEN=1;MEANALT=1;MQM=59.9773;MQMR=59.966;NS=94;NUMALT=1;ODDS=3.23826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40130;QR=217586;RO=6096;RPL=1146;RPP=2491.52;RPPR=13240.3;RPR=0;RUN=1;SAF=1146;SAP=2491.52;SAR=0;SRF=6096;SRP=13240.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:3,9:3:108:9:316:-25.1665,0,-6.46281	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:208:208,0:208:7442:0:0:0,-62.6142,-669.823	0/0:28:26,2:26:932:2:72:0,-1.59212,-77.3621	0/1:50:34,16:34:1224:16:568:-36.4004,0,-95.4155	0/1:76:56,20:56:2000:20:712:-41.5284,0,-157.395	0/1:96:66,30:66:2355:30:1021:-63.2935,0,-183.309	0/0:46:45,0:45:1616:0:0:0,-13.5463,-145.37	0/0:117:117,0:117:4172:0:0:0,-35.2205,-375.592	0/1:38:24,14:24:864:14:495:-33.4439,0,-66.6434	0/1:59:33,26:33:1184:26:910:-64.4549,0,-89.1075	0/0:55:55,0:55:1947:0:0:0,-16.5566,-175.505	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:79:79,0:79:2807:0:0:0,-23.7814,-252.784	0/1:40:18,22:18:630:22:750:-55.7731,0,-44.9834	0/1:67:42,25:42:1495:25:863:-57.8142,0,-114.675	0/0:55:55,0:55:1954:0:0:0,-16.5566,-176.134	0/1:26:17,9:17:612:9:320:-21.3156,0,-47.5867	0/1:103:60,43:60:2144:43:1527:-106.716,0,-162.222	0/1:94:45,49:45:1616:49:1695:-124.533,0,-117.433	0/1:110:61,49:61:2188:49:1728:-122.685,0,-164.072	0/0:67:66,1:66:2360:1:21:0,-18.0691,-210.559	0/0:169:160,9:160:5703:9:316:0,-22.0952,-484.612	0/1:24:11,13:11:383:13:468:-35.2349,0,-27.5785	0/0:302:302,0:302:10760:0:0:0,-90.9111,-968.241	0/1:141:91,50:91:3268:50:1762:-116.417,0,-251.894	0/1:19:7,12:7:248:12:424:-32.7768,0,-16.9446	0/0:170:170,0:170:6091:0:0:0,-51.1751,-548.29	0/1:147:108,39:108:3848:39:1388:-80.9675,0,-302.266	0/1:111:75,36:75:2687:36:1276:-81.7287,0,-208.66	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:218:218,0:218:7753:0:0:0,-65.6245,-697.528	0/1:133:70,63:70:2486:63:2234:-161.286,0,-183.956	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:121:120,1:120:4283:1:36:0,-32.8264,-382.05	0/1:19:10,9:10:360:9:312:-22.6958,0,-27.0247	0/1:103:61,42:61:2175:42:1465:-101.136,0,-165.01	0/1:63:31,32:31:1104:32:1121:-82.2317,0,-80.7057	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:99:99,0:99:3539:0:0:0,-29.802,-318.719	0/1:106:70,36:70:2508:36:1262:-81.9704,0,-194.063	0/1:104:66,38:66:2351:38:1340:-89.5901,0,-180.542	0/1:106:64,42:64:2300:42:1469:-100.593,0,-175.352	0/1:159:114,45:114:4079:45:1588:-95.3438,0,-319.431	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:123:123,0:123:4350:0:0:0,-37.0267,-391.486	0/1:21:17,4:17:608:4:144:-6.99199,0,-48.7304	0/0:20:19,0:19:676:0:0:0,-5.71957,-60.9507	0/0:82:81,1:81:2888:1:36:0,-21.0862,-256.559	0/1:50:31,19:31:1104:19:648:-43.5856,0,-84.6191	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/1:55:41,14:41:1467:14:500:-28.7795,0,-115.769	0/0:89:89,0:89:3163:0:0:0,-26.7917,-283.959	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:179:178,1:178:6367:1:36:0,-50.2861,-569.522	0/1:107:65,42:65:2336:42:1504:-103.444,0,-178.289	0/0:61:56,5:56:2008:5:180:0,-1.81076,-164.441	0/0:82:82,0:82:2919:0:0:0,-24.6845,-262.945	0/0:121:118,3:118:4240:3:99:0,-27.1881,-372.541	0/0:97:97,0:97:3454:0:0:0,-29.1999,-311.073	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:110:110,0:110:3906:0:0:0,-33.1133,-351.735	0/1:78:44,34:44:1559:34:1159:-81.1293,0,-117.12	0/1:20:13,7:13:464:7:244:-16.2788,0,-36.0769	0/1:84:74,10:74:2634:10:351:-6.64016,0,-212.02	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/0:218:218,0:218:7786:0:0:0,-65.6245,-700.772	0/0:159:158,1:158:5672:1:36:0,-44.2655,-506.999	0/1:46:38,8:38:1343:8:279:-11.6002,0,-107.322	0/0:124:123,1:123:4369:1:36:0,-33.7294,-389.787	0/1:12:6,6:6:216:6:207:-15.3545,0,-16.1782	0/1:71:34,37:34:1220:37:1279:-94.033,0,-88.7337	0/1:51:36,15:36:1288:15:528:-32.4988,0,-100.871	0/0:125:125,0:125:4466:0:0:0,-37.6287,-402.109	0/0:84:84,0:84:2990:0:0:0,-25.2865,-269.332	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:86:51,35:51:1806:35:1209:-83.222,0,-136.074	0/1:133:88,45:88:3118:45:1528:-97.7686,0,-240.811	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.545	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.113	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/1:59:32,27:32:1118:27:932:-66.4317,0,-83.1652	0/1:63:29,34:29:1040:34:1196:-88.9805,0,-74.9495	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182
chr04	30407137	.	T	C	128907	PASS	AB=0.608205;ABP=201.32;AC=156;AF=0.83871;AN=186;AO=5296;CIGAR=1X;DP=6065;DPB=6065;DPRA=0;EPP=11494.4;EPPR=1666.36;GTI=5;LEN=1;MEANALT=1.03226;MQM=57.963;MQMR=46.4595;NS=93;NUMALT=1;ODDS=1.94666;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188774;QR=27274;RO=766;RPL=4822;RPP=7754.5;RPPR=12.5466;RPR=474;RUN=1;SAF=4823;SAP=7761.64;SAR=473;SRF=412;SRP=12.5466;SRR=354;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:9,13:9:320:13:455:-34.6593,0,-19.2732	1/1:150:0,150:0:0:150:5345:-480.85,-45.1545,0	1/1:104:0,104:0:0:104:3717:-334.704,-31.3071,0	1/1:98:0,98:0:0:98:3492:-314.458,-29.5009,0	0/1:60:18,42:18:644:42:1491:-116.417,0,-37.4207	0/1:57:33,24:33:1172:24:851:-59.7507,0,-78.8459	0/1:89:33,56:33:1188:56:1993:-152.851,0,-71.3131	0/1:117:17,100:17:604:100:3549:-284.393,0,-16.1137	1/1:46:0,46:0:0:46:1633:-147.243,-13.8474,0	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0	0/1:106:45,61:45:1607:61:2175:-164.104,0,-104.976	0/1:97:61,35:61:2184:35:1252:-83.7846,0,-145.872	1/1:70:0,70:0:0:70:2516:-226.688,-21.0721,0	1/1:122:0,122:0:0:122:4349:-391.585,-36.7257,0	1/1:61:0,61:0:0:61:2165:-195.113,-18.3628,0	0/1:62:26,36:26:911:36:1290:-97.7399,0,-57.2721	0/1:89:41,48:41:1460:48:1694:-125.88,0,-95.3469	1/1:76:0,76:0:0:76:2706:-243.764,-22.8783,0	0/1:48:24,24:24:856:24:860:-63.2724,0,-56.0207	1/1:69:0,68:0:0:68:2424:-218.048,-20.47,0	1/1:40:0,40:0:0:40:1414:-127.554,-12.0412,0	0/1:25:7,18:7:248:18:614:-46.7797,0,-14.7995	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:51:0,51:0:0:51:1827:-164.699,-15.3525,0	0/1:29:4,25:4:129:25:892:-71.8698,0,-3.17345	1/1:188:0,188:0:0:188:6700:-589.648,-56.5936,0	1/1:41:0,41:0:0:41:1472:-132.77,-12.3422,0	0/1:35:16,19:16:576:19:684:-51.3543,0,-37.7677	1/1:137:0,137:0:0:137:4890:-433.816,-41.2411,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:34:12,22:12:432:22:792:-61.3683,0,-24.0445	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:324:0,324:0:0:324:11570:-1007.74,-97.5337,0	0/1:39:9,30:9:324:30:1068:-84.6561,0,-16.9008	1/1:82:0,82:0:0:82:2931:-264.012,-24.6845,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:136:0,136:0:0:136:4837:-435.484,-40.9401,0	0/1:45:21,24:21:743:24:862:-64.3254,0,-49.4592	0/1:58:16,42:16:576:42:1484:-116.362,0,-33.4248	0/1:72:41,31:41:1464:31:1078:-75.6503,0,-101.806	1/1:74:0,74:0:0:74:2643:-238.025,-22.2762,0	1/1:60:0,60:0:0:60:2133:-187.658,-18.0618,0	1/1:62:0,62:0:0:62:2187:-197.076,-18.6639,0	0/1:60:21,39:21:748:39:1391:-107.426,0,-43.2549	0/1:23:3,20:3:108:20:716:-57.844,0,-0.975337	1/1:59:0,59:0:0:59:2112:-190.347,-17.7608,0	1/1:49:0,49:0:0:49:1740:-153.345,-14.7505,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:60:0,60:0:0:60:2144:-193.225,-18.0618,0	1/1:27:1,26:1:36:26:928:-78.9746,-4.52954,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:96:0,96:0:0:96:3420:-308.005,-28.8989,0	0/1:10:6,4:6:216:4:143:-10.2087,0,-12.5056	1/1:12:0,12:0:0:12:413:-37.1805,-3.61236,0	1/1:6:0,6:0:0:6:216:-19.1491,-1.80618,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:116:0,116:0:0:116:4137:-372.399,-34.9195,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:108:0,108:0:0:108:3867:-342.001,-32.5112,0	0/1:69:8,61:8:279:61:2184:-176.054,0,-3.96716	1/1:61:0,61:0:0:61:2169:-195.476,-18.3628,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:88:0,88:0:0:88:3126:-281.549,-26.4906,0	1/1:51:0,51:0:0:51:1806:-162.714,-15.3525,0	1/1:54:0,53:0:0:53:1900:-170.915,-15.9546,0	0/1:151:47,104:47:1667:104:3719:-281.754,0,-99.6029	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:20:2,18:2:72:18:640:-51.9072,0,-0.816122	1/1:44:0,44:0:0:44:1571:-141.681,-13.2453,0	1/1:121:1,120:1:36:120:4278:-381.589,-32.8264,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:90:22,68:22:780:68:2440:-192.758,0,-38.7361	1/1:55:0,55:0:0:55:1956:-176.309,-16.5567,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:33:3,30:3:108:30:1072:-86.8585,0,-0.14118	1/1:35:0,35:0:0:35:1260:-113.684,-10.5361,0	1/1:142:0,142:0:0:142:5047:-454.294,-42.7463,0	1/1:107:0,107:0:0:107:3804:-342.357,-32.2102,0	1/1:83:0,83:0:0:83:2958:-265.674,-24.9855,0	0/1:109:59,50:59:2112:50:1779:-127.577,0,-140.132	0/1:130:72,58:72:2561:58:2042:-144.915,0,-166.988	1/1:26:0,26:0:0:26:927:-83.7427,-7.82678,0	1/1:60:0,60:0:0:60:2151:-193.857,-18.0618,0	1/1:64:0,64:0:0:64:2276:-205.098,-19.2659,0	1/1:86:0,86:0:0:86:3092:-278.5,-25.8886,0	0/1:114:50,64:50:1779:64:2289:-171.945,0,-114.657	0/1:57:37,20:37:1298:20:711:-47.1542,0,-83.94	1/1:78:0,78:0:0:78:2765:-249.091,-23.4803,0	1/1:93:1,92:1:36:92:3276:-291.458,-24.3975,0
chr04	30407156	.	T	C	122766	PASS	AB=0.599174;ABP=168.401;AC=156;AF=0.83871;AN=186;AO=5157;CIGAR=1X;DP=5943;DPB=5943;DPRA=0;EPP=7597.9;EPPR=9.15215;GTI=4;LEN=1;MEANALT=1.05376;MQM=57.9961;MQMR=46.3035;NS=93;NUMALT=1;ODDS=0.394835;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181186;QR=27934;RO=781;RPL=5157;RPP=11201.3;RPPR=1698.93;RPR=0;RUN=1;SAF=4702;SAP=7597.9;SAR=455;SRF=414;SRP=9.15215;SRR=367;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:9,12:9:320:12:428:-32.5372,0,-19.5404	1/1:143:0,143:0:0:143:5044:-454.012,-43.0473,0	1/1:96:0,96:0:0:96:3369:-303.422,-28.8989,0	1/1:98:0,98:0:0:98:3413:-307.369,-29.5009,0	0/1:58:18,40:18:644:40:1421:-110.714,0,-37.8222	0/1:58:33,25:33:1184:25:852:-59.5303,0,-79.1481	0/1:89:34,55:34:1212:55:1972:-150.963,0,-73.0424	0/1:115:18,97:18:648:97:3404:-271.95,0,-20.6782	1/1:41:0,41:0:0:41:1460:-131.683,-12.3422,0	1/1:51:0,51:0:0:51:1790:-161.378,-15.3525,0	0/1:103:43,60:43:1536:60:2104:-158.62,0,-99.8112	0/1:97:63,34:63:2235:34:1170:-76.3953,0,-149.864	1/1:68:0,68:0:0:68:2371:-213.642,-20.47,0	1/1:119:0,119:0:0:119:4091:-368.38,-35.8226,0	1/1:60:0,60:0:0:60:2089:-188.274,-18.0618,0	0/1:60:24,35:24:864:35:1204:-90.5393,0,-52.7908	0/1:91:43,48:43:1536:48:1657:-122.012,0,-99.5268	1/1:73:0,73:0:0:73:2585:-232.883,-21.9752,0	0/1:47:24,23:24:864:23:816:-59.6133,0,-56.5313	1/1:69:0,69:0:0:69:2459:-221.562,-20.7711,0	1/1:40:0,39:0:0:39:1385:-124.742,-11.7402,0	0/1:24:7,17:7:252:17:612:-46.7646,0,-15.3432	1/1:17:0,17:0:0:17:595:-53.8767,-5.11751,0	1/1:47:0,47:0:0:47:1653:-149.055,-14.1484,0	0/1:28:4,24:4:144:24:843:-67.7592,0,-4.44574	1/1:177:0,177:0:0:177:6281:-553.273,-53.2823,0	1/1:42:0,42:0:0:42:1477:-133.222,-12.6433,0	0/1:37:18,19:18:648:19:661:-48.6735,0,-43.2157	1/1:136:0,136:0:0:136:4812:-427.107,-40.9401,0	1/1:21:0,21:0:0:21:743:-67.1933,-6.32163,0	0/1:34:12,22:12:428:22:767:-59.1118,0,-23.6821	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:317:0,317:0:0:317:11232:-978.877,-95.4265,0	0/1:38:10,28:10:360:28:958:-75.0868,0,-20.4052	1/1:78:0,78:0:0:78:2708:-243.962,-23.4803,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:132:0,132:0:0:132:4643:-418.022,-39.736,0	0/1:45:21,24:21:747:24:818:-60.3827,0,-49.2842	0/1:57:16,41:16:563:41:1457:-114.225,0,-32.55	0/1:68:40,28:40:1436:28:970:-67.1378,0,-99.9488	1/1:73:1,71:1:36:71:2457:-217.872,-18.5265,0	1/1:59:0,59:0:0:59:2062:-181.521,-17.7608,0	1/1:59:0,58:0:0:58:2028:-182.412,-17.4597,0	0/1:57:21,36:21:756:36:1255:-96.0899,0,-44.8799	0/1:23:4,19:4:144:19:645:-51.443,0,-3.51431	1/1:58:0,58:0:0:58:2049:-184.678,-17.4597,0	1/1:50:0,50:0:0:50:1743:-153.473,-15.0515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:57:0,57:0:0:57:2011:-181.258,-17.1587,0	1/1:27:1,26:1:36:26:936:-79.6958,-4.52954,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:96:0,96:0:0:96:3338:-300.625,-28.8989,0	0/1:10:6,4:6:216:4:144:-10.3009,0,-12.5056	1/1:12:0,12:0:0:12:424:-38.1791,-3.61236,0	1/1:5:0,5:0:0:5:180:-16.069,-1.50515,0	1/1:40:0,40:0:0:40:1417:-127.825,-12.0412,0	1/1:115:3,112:3:108:112:3933:-344.148,-24.6325,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:105:0,104:0:0:104:3697:-326.349,-31.3071,0	0/1:69:8,61:8:284:61:2134:-171.555,0,-4.42218	1/1:60:0,60:0:0:60:2072:-186.744,-18.0618,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:78:0,78:0:0:78:2755:-248.189,-23.4803,0	1/1:86:0,86:0:0:86:3068:-276.346,-25.8886,0	1/1:49:0,49:0:0:49:1730:-155.852,-14.7505,0	1/1:54:0,54:0:0:54:1886:-170.011,-16.2556,0	0/1:147:42,105:42:1499:105:3731:-282.51,0,-86.7463	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:20:2,18:2:72:18:642:-52.0885,0,-0.816122	1/1:42:0,42:0:0:42:1499:-135.204,-12.6433,0	1/1:119:1,118:1:36:118:4134:-368.639,-32.2243,0	1/1:50:0,50:0:0:50:1755:-158.23,-15.0515,0	0/1:91:23,68:23:828:68:2414:-190.111,0,-41.9596	1/1:54:0,54:0:0:54:1837:-165.598,-16.2556,0	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:31:3,28:3:108:28:974:-78.6379,0,-0.74324	1/1:34:0,34:0:0:34:1188:-107.21,-10.235,0	1/1:140:0,140:0:0:140:4918:-442.613,-42.1442,0	1/1:100:0,100:0:0:100:3468:-312.333,-30.103,0	1/1:81:0,81:0:0:81:2851:-256.829,-24.3834,0	0/1:112:63,49:63:2268:49:1712:-120.647,0,-150.346	0/1:134:76,58:76:2711:58:2041:-143.622,0,-177.121	1/1:27:0,27:0:0:27:940:-84.9085,-8.12781,0	1/1:56:0,56:0:0:56:1977:-178.203,-16.8577,0	1/1:64:0,64:0:0:64:2244:-202.218,-19.2659,0	1/1:80:0,80:0:0:80:2821:-254.126,-24.0824,0	0/1:114:51,63:51:1823:63:2207:-164.575,0,-118.076	0/1:58:39,19:39:1388:19:680:-44.0681,0,-90.2225	1/1:75:0,75:0:0:75:2595:-233.795,-22.5773,0	1/1:92:0,92:0:0:92:3253:-292.991,-27.6948,0
chr04	30431464	.	GTG	GTA,CTA	464198	PASS	AB=0.464781,0.532469;ABP=85.2988,72.9523;AC=142,46;AF=0.755319,0.244681;AN=188;AO=12919,4104;CIGAR=2M1X,1X1M1X;DP=17068;DPB=17068;DPRA=0,0.98365;EPP=28056.3,8914.73;EPPR=24.725;GTI=1;LEN=1,3;MEANALT=1.97872,2.37288;MQM=56.5257,51.0714;MQMR=60;NS=94;NUMALT=2;ODDS=2.10052;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=462209,144955;QR=346;RO=10;RPL=5252,1742;RPP=983.312,206.401;RPPR=6.48466;RPR=7667,2362;RUN=1,1;SAF=5252,1742;SAP=983.312,206.401;SAR=7667,2362;SRF=3;SRP=6.48466;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:108:0,45,63:0:0:45,63:1616,2212:-303.035,-172.31,-158.763,-131.073,0,-112.108	1/1:220:0,220,0:0:0:220,0:7875,0:-705.432,-66.2266,0,-705.432,-66.2266,-705.432	1/1:246:0,246,0:0:0:246,0:8809,0:-788.202,-74.0534,0,-788.202,-74.0534,-788.202	1/1:364:0,363,1:0:0:363,1:12961,27:-1162.03,-109.274,0,-1159.91,-106.888,-1159.61	1/2:64:0,25,39:0:0:25,39:900,1389:-181.37,-108.051,-100.525,-73.6713,0,-61.9311	1/2:48:0,26,22:0:0:26,22:909,785:-136.042,-62.5804,-54.7536,-73.8093,0,-67.1866	1/2:177:0,80,96:0:0:80,96:2868,3408:-506.853,-273.272,-249.19,-233.594,0,-204.696	1/2:284:0,119,165:0:0:119,165:4226,5815:-798.031,-455.584,-419.761,-342.795,0,-293.125	1/1:178:1,177,0:1:36:177,0:6333,0:-563.007,-49.9851,0,-563.308,-53.2823,-566.246	1/1:270:0,268,1:0:0:268,1:9602,36:-862.868,-80.676,0,-859.931,-77.7386,-859.63	1/2:160:0,77,82:0:0:77,82:2764,2900:-458.543,-233.126,-209.947,-225.411,0,-200.727	1/2:202:0,105,95:0:0:105,95:3768,3321:-565.563,-259.824,-228.216,-305.736,0,-277.138	1/1:184:0,183,1:0:0:183,1:6531,34:-585.315,-55.0885,0,-582.715,-52.1659,-582.414	1/1:175:0,175,0:0:0:175,0:6263,0:-563.372,-52.6803,0,-563.372,-52.6803,-563.372	1/1:177:0,177,0:0:0:177,0:6354,0:-570.797,-53.2823,0,-570.797,-53.2823,-570.797	1/2:146:0,75,71:0:0:75,71:2688,2507:-420.185,-201.738,-179.161,-218.8,0,-197.427	1/2:162:0,81,81:0:0:81,81:2900,2877:-467.692,-231.496,-207.113,-236.55,0,-212.167	1/1:168:0,168,0:0:0:168,0:6018,0:-539.512,-50.573,0,-539.512,-50.573,-539.512	1/2:97:0,54,43:0:0:54,43:1931,1541:-282.448,-125.12,-108.865,-157.684,0,-144.74	1/2:227:0,90,133:0:0:90,133:3214,4672:-633.421,-371.879,-344.786,-261.644,0,-221.607	1/2:389:0,204,183:0:0:204,183:7287,6435:-1096.16,-505.683,-444.273,-590.515,0,-535.426	1/2:93:0,22,71:0:0:22,71:792,2471:-263.474,-198.882,-192.259,-64.9475,0,-43.5743	1/1:173:0,172,0:0:0:172,0:6175,0:-553.733,-51.7772,0,-553.733,-51.7772,-553.733	1/1:186:0,171,14:0:0:171,14:6122,504:-549.787,-51.4761,0,-509.051,-10.6035,-504.837	1/2:130:0,69,61:0:0:69,61:2476,2167:-374.106,-173.405,-152.634,-201.054,0,-182.691	1/1:576:0,574,1:0:0:574,1:20463,36:-1839.3,-172.791,0,-1836.36,-169.851,-1836.06	1/2:444:0,197,246:0:0:197,246:7047,8735:-1260.57,-689.09,-629.787,-571.576,0,-497.523	1/2:81:0,41,40:0:0:41,40:1461,1418:-233.541,-114.598,-102.255,-119.296,0,-107.255	1/1:369:0,366,0:0:0:366,0:13124,0:-1179.48,-110.177,0,-1179.48,-110.177,-1179.48	1/2:229:0,123,106:0:0:123,106:4424,3736:-657.985,-297.401,-260.374,-360.936,0,-329.027	1/2:226:0,88,138:0:0:88,138:3125,4856:-644.081,-389.642,-363.151,-254.791,0,-213.249	1/2:8:0,3,5:0:0:3,5:108,180:-23.4656,-14.6501,-13.747,-9.17208,0,-7.66693	1/2:12:0,7,5:0:0:7,5:252,176:-34.7346,-14.327,-12.2198,-20.7572,0,-19.2521	1/1:5:0,5,0:0:0:5,0:180,0:-16.5341,-1.50515,0,-16.5341,-1.50515,-16.5341	1/2:16:0,7,9:0:0:7,9:252,307:-44.9039,-24.5563,-22.4491,-20.6935,0,-17.9842	1/1:16:0,16,0:0:0:16,0:576,0:-50.5381,-4.81648,0,-50.5381,-4.81648,-50.5381	1/1:418:0,418,0:0:0:418,0:14981,0:-1346.22,-125.831,0,-1346.22,-125.831,-1346.22	1/2:222:0,101,121:0:0:101,121:3619,4253:-631.853,-337.181,-306.777,-295.023,0,-258.598	1/1:135:0,135,0:0:0:135,0:4842,0:-434.936,-40.6391,0,-434.936,-40.6391,-434.936	1/1:5:0,5,0:0:0:5,0:180,0:-16.3865,-1.50515,0,-16.3865,-1.50515,-16.3865	1/1:221:0,220,1:0:0:220,1:7888,36:-707.841,-66.2266,0,-705.033,-63.0731,-704.732	1/2:63:0,37,26:0:0:37,26:1328,927:-182.283,-74.7031,-63.565,-107.933,0,-100.106	1/2:251:0,143,108:0:0:143,108:5130,3785:-717.163,-300.667,-257.62,-416.844,0,-384.333	1/2:178:0,76,102:0:0:76,102:2724,3608:-512.89,-290.825,-267.947,-222.42,0,-191.715	1/1:160:0,160,0:0:0:160,0:5701,0:-511.952,-48.1648,0,-511.952,-48.1648,-511.952	1/1:193:0,192,0:0:0:192,0:6825,0:-612.348,-57.7978,0,-612.348,-57.7978,-612.348	1/1:132:0,132,0:0:0:132,0:4740,0:-425.245,-39.736,0,-425.245,-39.736,-425.245	1/2:260:0,128,130:0:0:128,130:4544,4583:-740.368,-370.571,-332.039,-369.858,0,-330.725	1/2:174:0,74,100:0:0:74,100:2656,3547:-500.899,-284.407,-262.131,-216.846,0,-186.743	1/2:261:0,127,134:0:0:127,134:4564,4769:-756.01,-384.748,-346.517,-371.618,0,-331.28	1/2:282:0,120,162:0:0:120,162:4304,5743:-811.005,-460.65,-424.527,-350.709,0,-301.942	1/2:8:0,7,1:0:0:7,1:252,36:-23.8463,-3.29724,-1.19003,-20.9088,0,-20.6078	1/1:215:0,215,0:0:0:215,0:7698,0:-689.691,-64.7215,0,-689.691,-64.7215,-689.691	1/2:112:0,58,54:0:0:58,54:2080,1904:-321.916,-152.97,-135.51,-169.298,0,-153.042	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.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chr04	30443306	.	C	T	20161	PASS	AB=0.49358;ABP=4.20918;AC=46;AF=0.247312;AN=186;AO=1670;CIGAR=1X;DP=7584;DPB=7584;DPRA=0.855025;EPP=26.3582;EPPR=77.7319;GTI=3;LEN=1;MEANALT=1;MQM=24.7096;MQMR=26.9251;NS=93;NUMALT=1;ODDS=1.10432;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59915;QR=211316;RO=5911;RPL=769;RPP=25.6664;RPPR=77.0707;RPR=901;RUN=1;SAF=1;SAP=3620.69;SAR=1669;SRF=1;SRP=12829.9;SRR=5910;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:16,5:16:572:5:180:-4.59661,0,-30.2256	0/0:112:112,0:112:3999:0:0:0,-33.7154,-259.034	0/0:62:62,0:62:2216:0:0:0,-18.6639,-142.414	0/0:111:110,1:110:3930:1:36:0,-31.0408,-253.385	0/1:31:16,15:16:576:15:536:-22.9979,0,-28.7099	0/1:13:8,5:8:284:5:180:-7.00485,0,-15.6628	0/1:66:34,32:34:1220:32:1152:-48.727,0,-60.2557	0/1:145:80,65:80:2872:65:2336:-96.4927,0,-143.934	0/0:87:87,0:87:3104:0:0:0,-26.1896,-200.702	0/0:101:101,0:101:3606:0:0:0,-30.404,-236.815	0/1:154:84,70:84:3008:70:2520:-105.532,0,-149.763	0/1:103:52,51:52:1859:51:1828:-79.258,0,-88.7556	0/0:133:133,0:133:4758:0:0:0,-40.037,-312.374	0/0:167:167,0:167:5982:0:0:0,-50.272,-384.059	0/0:92:92,0:92:3286:0:0:0,-27.6948,-213.224	0/1:89:56,33:56:2004:33:1180:-43.8724,0,-105.475	0/1:130:57,73:57:2035:73:2616:-121.072,0,-94.9025	0/0:112:112,0:112:3998:0:0:0,-33.7154,-261.911	0/1:72:43,29:43:1544:29:1040:-41.5118,0,-81.116	0/1:55:27,28:27:959:28:1004:-44.391,0,-46.713	0/1:106:52,54:52:1868:54:1944:-83.3391,0,-87.8768	0/1:22:4,18:4:144:18:648:-31.9802,0,-3.55141	0/0:71:71,0:71:2539:0:0:0,-21.3731,-165.798	0/0:79:72,7:72:2555:7:243:0,-8.72736,-151.175	0/1:35:17,18:17:612:18:644:-28.1188,0,-29.6411	0/0:208:208,0:208:7468:0:0:0,-62.6142,-474.114	0/1:130:72,58:72:2569:58:2088:-86.1766,0,-125.988	0/1:55:22,33:22:788:33:1188:-58.2189,0,-34.3042	0/0:97:97,0:97:3472:0:0:0,-29.1999,-217.76	0/1:89:35,54:35:1252:54:1944:-90.9066,0,-54.8143	0/1:74:34,40:34:1211:40:1436:-63.3735,0,-56.0341	0/1:5:4,1:4:144:1:36:-0.86838,0,-7.96206	0/1:8:3,5:3:108:5:180:-8.42291,0,-4.75614	0/0:2:2,0:2:72:0:0:0,-0.60206,-4.86154	0/0:2:2,0:2:72:0:0:0,-0.60206,-4.86154	0/0:11:11,0:11:392:0:0:0,-3.31133,-26.3121	0/0:272:271,0:271:9693:0:0:0,-81.5791,-607.766	0/1:88:58,30:58:2072:30:1080:-38.9503,0,-107.251	0/0:114:114,0:114:4066:0:0:0,-34.3174,-266.396	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.16438	0/0:57:55,2:55:1976:2:72:0,-12.649,-123.122	0/1:43:18,25:18:648:25:892:-40.5435,0,-29.6958	0/1:62:29,33:29:1040:33:1188:-53.0878,0,-48.4511	0/1:143:75,68:75:2688:68:2448:-103.713,0,-129.844	0/0:73:72,0:72:2588:0:0:0,-21.6742,-169.66	0/0:45:45,0:45:1616:0:0:0,-13.5463,-99.7361	0/0:66:66,0:66:2356:0:0:0,-19.868,-152.594	0/1:83:48,35:48:1720:35:1256:-53.7924,0,-88.0425	0/1:76:41,35:41:1460:35:1260:-53.2173,0,-73.0678	0/1:102:54,48:54:1932:48:1720:-72.7264,0,-95.2103	0/1:50:25,25:25:900:25:892:-38.4375,0,-40.8665	1/1:3:0,3:0:0:3:108:-6.64588,-0.90309,0	0/0:75:75,0:75:2696:0:0:0,-22.5772,-175.829	0/1:29:8,21:8:288:21:756:-37.5574,0,-10.0553	0/0:9:9,0:9:324:0:0:0,-2.70927,-21.1431	0/0:74:74,0:74:2641:0:0:0,-22.2762,-173.015	0/1:35:16,19:16:572:19:684:-30.2887,0,-26.3468	.:.:.:.:.:.:.:.	0/1:13:8,5:8:288:5:180:-7.17521,0,-14.1788	0/1:72:50,22:50:1775:22:784:-26.5859,0,-95.2945	0/0:133:133,0:133:4769:0:0:0,-40.037,-310.314	0/0:5:5,0:5:180:0:0:0,-1.50515,-11.77	0/0:89:89,0:89:3183:0:0:0,-26.7917,-198.7	0/1:119:53,66:53:1892:66:2372:-107.226,0,-88.4949	0/0:87:84,3:84:2999:3:108:0,-18.7839,-187.222	0/0:35:35,0:35:1243:0:0:0,-10.536,-81.3333	0/0:94:94,0:94:3333:0:0:0,-28.2968,-218.729	0/0:71:71,0:71:2540:0:0:0,-21.3731,-168.364	0/0:61:61,0:61:2177:0:0:0,-18.3628,-140.937	0/0:56:56,0:56:1986:0:0:0,-16.8577,-128.28	0/1:132:59,73:59:2112:73:2611:-119.63,0,-92.8295	0/1:35:20,15:20:707:15:540:-22.5831,0,-35.9967	0/1:42:22,20:22:788:20:718:-30.2212,0,-39.1649	0/0:68:68,0:68:2440:0:0:0,-20.47,-162.055	0/0:174:173,0:173:6169:0:0:0,-52.0782,-400.672	0/0:129:129,0:129:4623:0:0:0,-38.8329,-300.987	0/1:84:42,42:42:1500:42:1504:-64.7717,0,-71.9918	0/0:95:94,1:94:3368:1:36:0,-26.2243,-218.246	0/1:5:4,1:4:144:1:36:-0.86838,0,-7.96206	0/1:79:34,45:34:1211:45:1616:-74.3123,0,-55.7091	0/1:48:22,26:22:783:26:922:-41.8054,0,-39.0621	0/0:71:71,0:71:2552:0:0:0,-21.3731,-166.907	0/0:127:127,0:127:4556:0:0:0,-38.2308,-297.332	0/0:126:126,0:126:4520:0:0:0,-37.9298,-293.013	0/1:166:75,91:75:2668:91:3242:-146.997,0,-122.763	0/1:183:100,83:100:3581:83:2963:-124.607,0,-178.796	0/0:44:44,0:44:1565:0:0:0,-13.2453,-100.508	0/0:101:101,0:101:3598:0:0:0,-30.404,-236.871	0/0:102:102,0:102:3613:0:0:0,-30.7051,-235.002	0/0:122:122,0:122:4365:0:0:0,-36.7257,-282.443	0/1:154:88,66:88:3113:66:2376:-96.7607,0,-158.25	0/1:103:31,72:31:1112:72:2592:-128.293,0,-40.0855	0/0:69:69,0:69:2476:0:0:0,-20.7711,-160.918	0/0:138:138,0:138:4925:0:0:0,-41.5421,-321.886
chr04	30478939	.	AGCA	GGAA,AGAA	393937	PASS	AB=0.599338,0.395527;ABP=754.113,833.775;AC=143,45;AF=0.760638,0.239362;AN=188;AO=13712,3482;CIGAR=1X1M1X1M,2M1X1M;DP=17282;DPB=17281;DPRA=0,1.20717;EPP=23120,6926.67;EPPR=0;GTI=2;LEN=4,1;MEANALT=2.34043,2.81818;MQM=59.9437,59.9931;MQMR=0;NS=94;NUMALT=2;ODDS=7.84117;PAIRED=0,0;PAIREDR=0;PAO=0.833333,0.333333;PQA=28,12;PQR=12;PRO=0.333333;QA=482949,124735;QR=0;RO=0;RPL=12897,3407;RPP=23120,6926.67;RPPR=0;RPR=815,75;RUN=1,1;SAF=0,0;SAP=29778.2,7564.08;SAR=13712,3482;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:19:0,12,7:0:0:12,7:423,252:-55.3574,-20.9217,-17.3094,-34.7927,0,-32.6855	1/1:182:0,180,0:0:0:180,0:6321,0:-568.703,-54.1854,0,-568.703,-54.1854,-568.703	1/1:88:0,88,0:0:0:88,0:3094,0:-278.688,-26.4906,0,-278.688,-26.4906,-278.688	1/1:179:0,178,0:0:0:178,0:6220,0:-559.544,-53.5833,0,-559.544,-53.5833,-559.544	1/2:52:0,34,16:0:0:34,16:1194,572:-143.912,-46.7306,-36.4956,-97.2684,0,-92.4519	1/2:49:0,32,17:0:0:32,17:1103,612:-139.881,-50.2959,-40.663,-89.9398,0,-84.8223	1/2:36:0,25,11:0:0:25,11:889,396:-105.117,-32.6714,-25.1457,-72.8039,0,-69.4926	1/2:131:0,75,54:0:0:75,54:2628,1944:-372.455,-158.621,-136.043,-213.831,0,-197.575	1/1:152:0,152,0:0:0:152,0:5325,0:-479.377,-45.7566,0,-479.377,-45.7566,-479.377	1/1:107:0,106,0:0:0:106,0:3692,0:-332.143,-31.9092,0,-332.143,-31.9092,-332.143	1/2:190:0,108,80:0:0:108,80:3834,2868:-546.418,-234.027,-201.516,-312.499,0,-288.417	1/2:62:0,38,24:0:0:38,24:1340,856:-179.239,-70.1364,-58.6972,-109.458,0,-102.233	1/1:60:0,56,1:0:0:56,1:1948,36:-175.241,-16.8577,0,-172.303,-13.9178,-172.002	1/1:61:0,61,0:0:0:61,0:2112,0:-190.341,-18.3628,0,-190.341,-18.3628,-190.341	1/1:68:0,66,0:0:0:66,0:2352,0:-211.658,-19.868,0,-211.658,-19.868,-211.658	1/2:57:0,37,20:0:0:37,20:1300,708:-163.835,-58.025,-46.8869,-106.163,0,-100.142	1/2:40:0,19,21:0:0:19,21:660,756:-115.696,-62.0456,-56.326,-54.0032,0,-47.6816	1/1:46:0,46,0:0:0:46,0:1638,0:-147.708,-13.8474,0,-147.708,-13.8474,-147.708	1/2:131:0,74,57:0:0:74,57:2617,2048:-380.579,-167.433,-145.157,-213.503,0,-196.344	1/2:168:0,131,37:0:0:131,37:4636,1324:-485.938,-108.324,-68.8891,-377.971,0,-366.833	1/2:171:0,118,50:0:0:118,50:4125,1779:-480.6,-145.038,-109.516,-335.613,0,-320.561	1/2:51:0,21,28:0:0:21,28:756,1008:-144.077,-82.3875,-76.0659,-61.8226,0,-53.3937	1/1:76:0,76,0:0:0:76,0:2704,0:-243.587,-22.8783,0,-243.587,-22.8783,-243.587	1/1:72:0,68,4:0:0:68,4:2388,140:-214.828,-20.47,0,-203.437,-8.72958,-202.233	1/2:47:0,37,10:0:0:37,10:1293,360:-134.905,-29.734,-18.5959,-105.529,0,-102.519	1/1:317:0,315,0:0:0:315,0:11071,0:-995.997,-94.8245,0,-995.997,-94.8245,-995.997	1/2:199:0,118,80:0:0:118,80:4126,2872:-569.992,-234.363,-198.841,-335.713,0,-311.631	1/1:36:0,35,0:0:0:35,0:1217,0:-109.471,-10.5361,0,-109.471,-10.5361,-109.471	1/1:312:0,312,0:0:0:312,0:10976,0:-987.756,-93.9214,0,-987.756,-93.9214,-987.756	1/2:79:0,37,42:0:0:37,42:1324,1512:-231.697,-123.731,-112.593,-108.324,0,-95.6811	1/2:81:0,49,32:0:0:49,32:1743,1148:-236.039,-93.9969,-79.2464,-142.399,0,-132.766	1/2:731:0,468,260:0:0:468,260:16645,9312:-2115.88,-759.413,-618.531,-1356.47,0,-1278.2	1/2:898:0,607,287:0:0:607,287:21475,10308:-2589.8,-840.933,-658.208,-1748.91,0,-1662.52	1/1:671:0,666,1:0:0:666,1:23388,36:-2104,-200.486,0,-2101.06,-197.541,-2100.76	1/2:1390:0,712,671:0:0:712,671:25041,24018:-3996.77,-1958.64,-1744.31,-2038.17,0,-1836.18	1/1:539:0,537,0:0:0:537,0:18882,0:-1698.46,-161.653,0,-1698.46,-161.653,-1698.46	1/1:286:0,286,0:0:0:286,0:10000,0:-899.962,-86.0946,0,-899.962,-86.0946,-899.962	1/2:146:0,84,62:0:0:84,62:2894,2219:-416.365,-181.31,-156.023,-235.407,0,-216.743	1/1:298:0,297,0:0:0:297,0:10550,0:-949.065,-89.4059,0,-949.065,-89.4059,-949.065	1/1:405:0,401,0:0:0:401,0:14123,0:-1270.4,-120.713,0,-1270.4,-120.713,-1270.4	1/1:103:0,101,2:0:0:101,2:3560,72:-320.116,-30.404,0,-314.241,-24.1694,-313.639	1/2:139:0,82,57:0:0:82,57:2910,2052:-404.869,-167.775,-143.091,-237.451,0,-220.293	1/2:80:0,59,21:0:0:59,21:2085,756:-231.848,-62.0456,-44.2848,-170.16,0,-163.839	1/2:65:0,41,24:0:0:41,24:1450,860:-188.594,-70.4971,-58.1549,-118.453,0,-111.229	1/1:62:0,61,0:0:0:61,0:2155,0:-193.856,-18.3628,0,-193.856,-18.3628,-193.856	1/1:49:0,48,0:0:0:48,0:1684,0:-151.562,-14.4494,0,-151.562,-14.4494,-151.562	1/1:201:0,198,1:0:0:198,1:6997,36:-629.49,-59.6039,0,-626.553,-56.6414,-626.252	1/2:109:0,74,35:0:0:74,35:2611,1260:-315.773,-103.169,-80.8932,-212.962,0,-202.426	1/2:78:0,60,16:0:0:60,16:2122,576:-219.914,-47.0786,-29.0168,-172.914,0,-168.097	1/2:72:0,52,20:0:0:52,20:1815,704:-205.289,-57.6639,-42.0104,-147.976,0,-141.955	1/2:91:0,78,12:0:0:78,12:2746,432:-258.793,-35.249,-11.7687,-223.543,0,-219.931	1/2:580:0,302,273:0:0:302,273:10682,9766:-1666.44,-796.407,-705.496,-870.09,0,-787.909	1/1:125:0,124,0:0:0:124,0:4424,0:-397.97,-37.3277,0,-397.97,-37.3277,-397.97	1/2:27:0,9,18:0:0:9,18:322,644:-79.1294,-52.8721,-50.1628,-26.6149,0,-21.1964	1/1:323:0,320,0:0:0:320,0:11199,0:-1007.49,-96.3296,0,-1007.49,-96.3296,-1007.49	1/1:163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chr04	30498250	.	T	C	13208.3	PASS	AB=0.514911;ABP=5.9243;AC=49;AF=0.260638;AN=188;AO=812;CIGAR=1X;DP=3316;DPB=3316;DPRA=0.93941;EPP=1766.25;EPPR=5403.52;GTI=0;LEN=1;MEANALT=1.01923;MQM=52.3424;MQMR=59.9892;NS=94;NUMALT=1;ODDS=1.58349;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29029;QR=89527;RO=2503;RPL=0;RPP=1766.25;RPPR=5403.52;RPR=812;RUN=1;SAF=812;SAP=1766.25;SAR=0;SRF=2503;SRP=5438.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:468:14:504:-37.4833,0,-34.3318	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:34:34,0:34:1197:0:0:0,-10.235,-108.033	0/0:79:79,0:79:2812:0:0:0,-23.7814,-253.315	0/1:18:7,11:7:248:11:396:-30.5271,0,-17.2457	0/1:24:11,13:11:381:13:468:-34.9997,0,-27.3959	0/1:42:15,27:15:540:27:957:-73.5878,0,-36.2933	0/1:37:18,19:18:644:19:674:-49.6017,0,-47.1525	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.582	0/1:13:6,7:6:216:7:252:-19.0577,0,-15.8771	0/1:23:10,13:10:360:13:468:-35.4551,0,-25.8206	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:24:13,11:13:453:11:392:-28.2329,0,-33.8749	0/1:8:4,4:4:144:4:144:-10.7248,0,-10.9054	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:8:5,3:5:180:3:108:-7.64774,0,-14.1438	0/1:92:54,38:54:1944:38:1348:-93.1374,0,-147.541	0/1:57:24,33:24:864:33:1173:-88.0566,0,-60.9239	0/1:32:7,25:7:252:25:896:-70.7471,0,-13.396	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:23:17,6:17:612:6:216:-12.8464,0,-48.4897	0/1:34:13,21:13:468:21:756:-57.935,0,-32.2246	0/0:104:104,0:104:3725:0:0:0,-31.3071,-335.444	0/1:90:39,51:39:1385:51:1836:-138.127,0,-97.8542	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:103:103,0:103:3677:0:0:0,-31.0061,-331.132	0/1:23:12,11:12:432:11:381:-27.6631,0,-32.2975	0/1:49:23,26:23:809:26:917:-67.8788,0,-58.3778	1/1:3:0,3:0:0:3:104:-9.6945,-0.90309,0	0/1:9:3,6:3:108:6:216:-16.9324,0,-7.3659	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:6,2:6:212:2:72:-4.41546,0,-17.0166	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.72	0/1:56:31,25:31:1116:25:896:-63.8953,0,-83.894	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:55:53,2:53:1904:2:72:0,-9.72697,-164.808	0/1:12:5,7:5:180:7:252:-19.2888,0,-12.9397	0/1:43:19,24:19:676:24:860:-64.5712,0,-48.2237	0/1:12:4,8:4:144:8:284:-22.2299,0,-9.70126	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/1:87:48,39:48:1720:39:1385:-97.7285,0,-128.896	1/1:19:1,18:1:36:18:648:-54.8967,-2.1213,0	0/1:46:28,18:28:1008:18:648:-44.4745,0,-77.189	0/1:91:38,52:38:1364:52:1850:-138.499,0,-95.6094	1/1:4:0,4:0:0:4:143:-13.0344,-1.20412,0	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:22:10,12:10:360:12:432:-31.5364,0,-26.1216	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:43:43,0:43:1505:0:0:0,-12.9443,-135.738	0/1:28:11,17:11:381:17:612:-46.7669,0,-26.1918	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:11:3,8:3:108:8:288:-22.87,0,-6.76384	0/1:34:23,11:23:824:11:396:-25.7094,0,-64.2483	0/0:40:39,1:39:1404:1:36:0,-8.45197,-123.07	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:130:130,0:130:4627:0:0:0,-39.1339,-416.59	0/1:53:26,27:26:936:27:963:-70.1745,0,-68.6049	0/0:21:20,1:20:716:1:36:0,-2.72706,-61.1731	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:24:23,1:23:828:1:36:0,-3.63549,-71.2549	0/0:73:69,4:69:2484:4:144:0,-8.69504,-210.531	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:27:10,17:10:360:17:608:-46.7573,0,-24.6165	0/1:24:18,6:18:644:6:216:-12.516,0,-51.0659	0/1:61:30,31:30:1061:31:1110:-81.6119,0,-77.4365	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:94:94,0:94:3369:0:0:0,-28.2968,-303.424	0/1:29:8,21:8:288:21:752:-59.1505,0,-17.5375	0/0:35:34,1:34:1209:1:36:0,-6.94463,-105.523	0/1:17:6,11:6:216:11:396:-30.7967,0,-14.673	0/1:46:24,22:24:860:22:788:-57.199,0,-63.8745	0/1:61:32,29:32:1140:29:1040:-75.3385,0,-84.5464	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:18:11,7:11:396:7:252:-17.1838,0,-30.5642	0/1:44:21,23:21:756:23:828:-61.4106,0,-55.1219	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:24:15,9:15:536:9:316:-21.4002,0,-41.3501	0/1:22:10,12:10:360:12:428:-32.1377,0,-26.1216	0/0:113:113,0:113:4023:0:0:0,-34.0164,-362.255	0/0:35:35,0:35:1230:0:0:0,-10.536,-111
chr04	30498260	.	GAT	AAT,AAG	90577.8	PASS	AB=0.478203,0.519155;ABP=9.25794,7.83516;AC=139,49;AF=0.739362,0.260638;AN=188;AO=2493,821;CIGAR=1X2M,1X1M1X;DP=3324;DPB=3324;DPRA=10.3012,0.942483;EPP=313.452,5.55206;EPPR=5.18177;GTI=0;LEN=1,3;MEANALT=1.6413,2.05769;MQM=59.9924,52.2923;MQMR=60;NS=94;NUMALT=2;ODDS=4.08865;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=89507,29198;QR=36;RO=1;RPL=948,426;RPP=313.452,5.55206;RPPR=5.18177;RPR=1545,395;RUN=1,1;SAF=2493,821;SAP=5416.49,1785.79;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,13,14:0:0:13,14:464,497:-78.5984,-40.7698,-36.8564,-38.1841,0,-33.9697	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/1:78:0,78,0:0:0:78,0:2792,0:-251.52,-23.4803,0,-251.52,-23.4803,-251.52	1/2:18:0,7,11:0:0:7,11:252,394:-53.0171,-32.4543,-30.3471,-20.9217,0,-17.6104	1/2:25:0,11,14:0:0:11,14:396,504:-73.5548,-41.2424,-37.9311,-32.6714,0,-28.457	1/2:43:0,15,27:0:0:15,27:540,972:-123.151,-79.0896,-74.5741,-44.0613,0,-35.9335	1/2:38:0,18,20:0:0:18,20:648,709:-110.687,-57.81,-52.3914,-53.2333,0,-47.2127	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:37:0,37,0:0:0:37,0:1332,0:-120.181,-11.1381,0,-120.181,-11.1381,-120.181	1/2:13:0,6,7:0:0:6,7:216,252:-38.4888,-20.8639,-19.0577,-17.9843,0,-15.8771	1/2:23:0,10,13:0:0:10,13:360,458:-66.9449,-37.5671,-34.5568,-29.734,0,-25.8206	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6759,-8.42884,0,-90.6759,-8.42884,-90.6759	1/2:24:0,13,11:0:0:13,11:464,396:-70.3336,-32.507,-28.5936,-38.1841,0,-34.8728	1/2:8:0,4,4:0:0:4,4:144,144:-23.681,-11.9289,-10.7248,-12.1095,0,-10.9054	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:8:0,5,3:0:0:5,3:180,108:-23.8404,-9.15289,-7.64774,-15.0469,0,-14.1438	1/2:94:0,56,38:0:0:56,38:2008,1341:-272.56,-108.778,-91.9202,-164.136,0,-152.697	1/2:57:0,24,33:0:0:24,33:864,1169:-165.901,-95.4002,-88.1755,-70.8578,0,-60.9239	1/2:33:0,7,26:0:0:7,26:252,907:-93.9867,-73.4217,-71.3145,-20.9217,0,-13.095	1/1:40:0,40,0:0:0:40,0:1432,0:-129.178,-12.0412,0,-129.178,-12.0412,-129.178	1/2:23:0,16,6:0:0:16,6:576,213:-64.3342,-17.3324,-12.5159,-46.9987,0,-45.1925	1/2:33:0,12,21:0:0:12,21:432,754:-96.919,-61.6693,-58.0569,-35.6088,0,-29.2872	1/1:104:0,103,0:0:0:103,0:3690,0:-332.016,-31.0061,0,-332.016,-31.0061,-332.016	1/2:91:0,38,52:0:0:38,52:1364,1819:-258.954,-147.687,-136.248,-111.262,0,-95.6082	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:102:0,102,0:0:0:102,0:3668,0:-330.322,-30.7051,0,-330.322,-30.7051,-330.322	1/2:23:0,12,11:0:0:12,11:432,396:-67.8836,-32.6344,-29.022,-35.6088,0,-32.2975	1/2:47:0,20,26:0:0:20,26:720,910:-132.475,-73.7217,-67.7011,-58.7483,0,-50.9216	2/2:3:0,0,3:0:0:0,3:0,108:-10.0648,-10.0648,-10.0648,-0.90309,-0.90309,0	1/2:9:0,3,6:0:0:3,6:108,212:-26.3586,-17.5437,-16.6406,-9.17208,0,-7.3659	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:8:0,6,2:0:0:6,2:216,72:-23.8467,-6.22164,-4.41546,-17.9843,0,-17.3823	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:77:0,76,0:0:0:76,0:2736,0:-246.122,-22.8783,0,-246.122,-22.8783,-246.122	1/2:57:0,31,26:0:0:31,26:1116,920:-166.226,-75.1623,-65.8303,-91.4198,0,-83.593	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:55:0,53,2:0:0:53,2:1900,72:-170.918,-15.9546,0,-165.05,-9.72697,-164.448	1/2:12:0,5,7:0:0:5,7:180,247:-35.0667,-20.3761,-18.871,-15.0469,0,-12.9397	1/2:43:0,19,24:0:0:19,24:669,844:-123.315,-68.8515,-63.132,-54.8144,0,-47.5897	1/2:13:0,4,9:0:0:4,9:144,324:-38.4724,-26.7224,-25.5183,-12.1095,0,-9.40023	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:39:1,38,0:1:36:38,0:1364,0:-119.462,-8.1419,0,-119.763,-11.4391,-122.701	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/2:87:0,48,39:0:0:48,39:1724,1390:-253.485,-112.845,-98.3955,-140.996,0,-129.256	2/2:19:0,1,18:0:0:1,18:36,638:-57.2417,-54.3039,-54.0029,-5.41854,-2.1213,0	1/2:46:0,28,18:0:0:28,18:1008,643:-134.708,-52.4572,-44.0283,-82.6075,0,-77.189	1/2:91:0,38,53:0:0:38,53:1364,1896:-265.304,-154.04,-142.601,-111.622,0,-95.667	2/2:4:0,0,4:0:0:0,4:0,144:-13.0936,-13.0936,-13.0936,-1.20412,-1.20412,0	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/2:22:0,10,12:0:0:10,12:360,427:-63.7149,-34.3355,-31.3252,-29.734,0,-26.1216	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:43:0,42,0:0:0:42,0:1508,0:-135.655,-12.6433,0,-135.655,-12.6433,-135.655	1/2:28:0,10,18:0:0:10,18:350,640:-80.7668,-52.2921,-49.2818,-28.8261,0,-23.4076	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-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chr04	30498595	.	T	C	31052.9	PASS	AB=0.512849;ABP=8.14419;AC=46;AF=0.247312;AN=186;AO=1855;CIGAR=1X;DP=7927;DPB=7927;DPRA=1.10394;EPP=4005.08;EPPR=12851.6;GTI=1;LEN=1;MEANALT=1;MQM=55.1208;MQMR=56.1426;NS=93;NUMALT=1;ODDS=1.91351;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66067;QR=214023;RO=6072;RPL=1852;RPP=4005.08;RPPR=12851.6;RPR=3;RUN=1;SAF=0;SAP=4031.09;SAR=1855;SRF=0;SRP=13188.2;SRR=6072;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:17,11:17:584:11:388:-26.7502,0,-44.4547	0/0:109:109,0:109:3783:0:0:0,-32.8123,-340.671	0/0:324:322,2:322:11337:2:72:0,-90.7714,-1013.47	0/0:142:141,1:141:4936:1:36:0,-39.1548,-439.721	0/1:54:26,28:26:916:28:1008:-74.6849,0,-66.5008	0/1:36:19,17:19:672:17:612:-44.5581,0,-49.9688	0/1:92:42,50:42:1453:50:1751:-129.185,0,-103.093	0/1:137:65,72:65:2269:72:2588:-191.651,0,-163.231	0/0:108:108,0:108:3812:0:0:0,-32.5112,-343.283	0/0:57:57,0:57:2004:0:0:0,-17.1587,-179.828	0/1:39:21,18:21:756:18:648:-46.6258,0,-56.1833	0/1:75:34,41:34:1220:41:1468:-109.69,0,-87.5296	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:72:72,0:72:2545:0:0:0,-21.6742,-229.301	0/0:71:71,0:71:2516:0:0:0,-21.3731,-226.149	0/1:42:28,14:28:992:14:491:-31.8664,0,-76.9511	0/1:76:41,35:41:1456:35:1248:-89.5423,0,-108.458	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.915	0/1:51:24,27:24:848:27:972:-72.4136,0,-61.2856	0/1:121:53,68:53:1876:68:2444:-183.085,0,-132.078	0/1:102:44,58:44:1511:58:2045:-153.485,0,-105.569	0/1:114:41,73:41:1432:73:2612:-199.857,0,-94.5867	0/0:66:66,0:66:2348:0:0:0,-19.868,-210.885	0/0:81:80,1:80:2817:1:36:0,-20.7862,-250.173	0/1:81:30,51:30:1072:51:1793:-137.081,0,-72.409	0/0:273:273,0:273:9635:0:0:0,-82.1812,-864.042	0/1:186:93,93:93:3262:93:3291:-240.1,0,-237.811	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:175:174,1:174:6071:1:36:0,-49.091,-541.592	0/1:104:42,62:42:1484:62:2198:-166.653,0,-102.547	0/1:100:45,55:45:1592:55:1972:-147.335,0,-112.767	0/1:6:4,2:4:144:2:68:-4.65019,0,-11.5074	0/1:9:5,4:5:176:4:144:-10.6006,0,-13.4757	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:9:2,7:2:72:7:252:-20.3133,0,-4.12745	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:175:175,0:175:6169:0:0:0,-52.6802,-553.141	0/1:192:80,112:80:2805:112:4009:-302.759,0,-194.894	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.582	.:.:.:.:.:.:.:.	0/0:82:81,1:81:2826:1:36:0,-21.0872,-250.493	0/1:27:19,8:19:676:8:288:-18.1323,0,-53.0402	0/1:114:52,62:52:1852:62:2218:-164.492,0,-132.643	0/1:68:38,30:38:1352:30:1062:-75.0156,0,-101.296	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.346	0/0:101:100,1:100:3486:1:36:0,-26.8148,-309.491	0/0:95:94,1:94:3271:1:36:0,-25.0006,-291.014	0/1:136:81,55:81:2857:55:1980:-136.59,0,-215.388	0/1:88:46,42:46:1628:42:1473:-106.136,0,-120.066	0/1:123:61,62:61:2164:62:2217:-161.838,0,-157.599	0/1:86:54,32:54:1885:32:1148:-77.3501,0,-143.678	1/1:4:0,4:0:0:4:144:-13.2883,-1.20412,0	0/0:119:119,0:119:4148:0:0:0,-35.8226,-373.507	0/1:54:22,32:22:784:32:1135:-85.9436,0,-54.4556	0/0:5:5,0:5:168:0:0:0,-1.50515,-15.4509	0/0:62:62,0:62:2188:0:0:0,-18.6639,-196.697	0/1:36:17,19:17:593:19:669:-49.51,0,-42.7742	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0583	0/1:10:5,5:5:180:5:176:-13.1381,0,-13.5105	0/1:63:39,24:39:1384:24:860:-58.6667,0,-105.886	0/0:127:127,0:127:4529:0:0:0,-38.2308,-406.09	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.056	0/0:181:181,0:181:6378:0:0:0,-54.4864,-572.498	0/1:147:71,76:71:2528:76:2690:-196.992,0,-182.656	0/0:73:70,3:70:2468:3:108:0,-11.9028,-212.304	0/0:78:78,0:78:2679:0:0:0,-23.4803,-240.919	0/0:116:116,0:116:4105:0:0:0,-34.9195,-368.492	0/0:79:77,2:77:2733:2:57:0,-18.3746,-240.08	0/0:21:21,0:21:714:0:0:0,-6.32163,-64.5731	0/0:40:40,0:40:1393:0:0:0,-12.0412,-125.665	0/1:89:49,40:49:1744:40:1413:-100.15,0,-130.094	0/1:31:9,22:9:324:22:788:-61.7802,0,-20.124	0/1:91:44,47:44:1534:47:1669:-122.816,0,-110.954	0/0:44:44,0:44:1538:0:0:0,-13.2453,-138.708	0/0:207:207,0:207:7310:0:0:0,-62.3132,-657.96	0/0:150:150,0:150:5274:0:0:0,-45.1545,-472.149	0/1:210:95,115:95:3378:115:4073:-303.002,0,-241.017	0/0:81:80,1:80:2840:1:36:0,-20.7862,-252.243	0/1:8:6,2:6:216:2:72:-4.42657,0,-17.3823	0/1:92:45,47:45:1562:47:1657:-121.408,0,-113.172	0/1:138:69,69:69:2452:69:2472:-180.691,0,-179.393	0/0:142:141,1:141:4934:1:36:0,-39.1548,-439.502	0/0:113:113,0:113:4024:0:0:0,-34.0164,-361.461	0/0:99:99,0:99:3505:0:0:0,-29.802,-313.766	0/1:71:29,42:29:1028:42:1493:-113.024,0,-71.0964	0/1:115:60,55:60:2117:55:1975:-142.198,0,-155.735	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:48:48,0:48:1696:0:0:0,-14.4494,-152.926	0/0:60:60,0:60:2109:0:0:0,-18.0618,-190.078	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.461	0/1:101:61,40:61:2180:40:1436:-98.7282,0,-166.062	0/1:28:16,12:16:576:12:432:-30.7177,0,-43.6468	0/0:102:102,0:102:3601:0:0:0,-30.7051,-323.285	0/0:90:90,0:90:3200:0:0:0,-27.0927,-287.706
chr04	30520892	.	T	C	65000.1	PASS	AB=0.451613;ABP=182.682;AC=45;AF=0.239362;AN=188;AO=4008;CIGAR=1X;DP=20751;DPB=20751;DPRA=0.882524;EPP=8585.09;EPPR=35786.7;GTI=5;LEN=1;MEANALT=1.07547;MQM=59.7782;MQMR=36.7781;NS=94;NUMALT=1;ODDS=8.2063;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142570;QR=598308;RO=16738;RPL=3993;RPP=8576.47;RPPR=35778.1;RPR=15;RUN=1;SAF=4007;SAP=8697.59;SAR=1;SRF=16733;SRP=36305.7;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:47,18:47:1675:18:648:-39.0834,0,-119.62	0/0:317:316,1:316:11254:1:36:0,-91.8282,-943.989	0/0:242:242,0:242:8659:0:0:0,-72.8493,-730.397	0/0:637:637,0:637:22796:0:0:0,-191.756,-1876.26	0/1:131:71,60:71:2547:60:2139:-153.342,0,-169.46	0/1:114:65,49:65:2328:49:1734:-122.026,0,-162.868	0/1:461:254,207:254:9080:207:7342:-521.551,0,-610.959	0/1:203:126,77:126:4488:77:2720:-183.902,0,-319.448	0/0:228:228,0:228:8133:0:0:0,-68.6348,-687.294	0/0:275:274,0:274:9767:0:0:0,-82.4822,-805.308	0/1:117:46,71:46:1652:71:2536:-193.271,0,-101.186	0/1:176:76,100:76:2715:100:3528:-264.747,0,-175.064	0/0:186:186,0:186:6617:0:0:0,-55.9916,-556.136	0/0:168:168,0:168:5944:0:0:0,-50.573,-494.84	0/0:153:153,0:153:5459:0:0:0,-46.0576,-445.696	0/1:120:57,63:57:2037:63:2206:-162.65,0,-134.703	0/1:182:104,77:104:3724:77:2751:-192.977,0,-259.998	0/0:151:151,0:151:5402:0:0:0,-45.4555,-456.031	0/1:101:56,45:56:1995:45:1610:-114.786,0,-135.047	0/1:604:303,301:303:10827:301:10738:-783.989,0,-710.267	0/1:391:220,171:220:7854:171:6099:-430.882,0,-538.64	0/1:227:85,142:85:3044:142:5071:-385.816,0,-182.252	0/0:194:194,0:194:6941:0:0:0,-58.3998,-571.802	0/0:308:299,9:299:10691:9:320:0,-63.5749,-865.783	0/1:125:89,36:89:3196:36:1279:-77.7837,0,-225.696	0/0:613:613,0:613:21992:0:0:0,-184.531,-1804.56	0/1:282:166,116:166:5954:116:4138:-287.713,0,-409.758	0/0:109:109,0:109:3916:0:0:0,-32.8123,-325.038	0/0:687:687,0:687:24626:0:0:0,-206.808,-2018.55	0/1:239:120,119:120:4275:119:4233:-308.777,0,-283.643	0/1:379:212,167:212:7603:167:5972:-423.497,0,-514.295	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.45459	0/1:10:7,3:7:252:3:104:-6.69251,0,-18.405	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.6318	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.78554	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.583	0/0:417:417,0:417:14891:0:0:0,-125.53,-1229.4	0/1:346:187,159:187:6712:159:5631:-402.325,0,-445.163	0/0:157:157,0:157:5601:0:0:0,-47.2617,-468.758	0/0:10:10,0:10:356:0:0:0,-3.0103,-30.086	0/0:374:372,2:372:13308:2:72:0,-105.748,-1095.66	0/1:77:46,31:46:1652:31:1080:-74.3259,0,-115.578	0/1:294:163,131:163:5832:131:4652:-327.944,0,-400.066	0/1:190:97,93:97:3492:93:3325:-242.269,0,-230.552	0/0:135:135,0:135:4777:0:0:0,-40.639,-393.597	0/0:234:234,0:234:8339:0:0:0,-70.441,-687.853	0/0:306:305,1:305:10922:1:36:0,-88.5169,-915.14	0/1:371:224,147:224:8052:147:5232:-359.068,0,-545.158	0/1:193:134,59:134:4804:59:2095:-130.72,0,-339.242	0/1:244:133,111:133:4735:111:3927:-280.173,0,-316.244	0/1:377:202,174:202:7244:174:6210:-444.961,0,-484.069	0/1:10:8,2:8:288:2:72:-3.82642,0,-21.3456	0/0:302:302,0:302:10791:0:0:0,-90.9111,-905.853	0/1:156:87,68:87:3094:68:2403:-169.237,0,-207.461	0/0:18:18,0:18:644:0:0:0,-5.41854,-53.1565	0/0:360:360,0:360:12900:0:0:0,-108.371,-1068.93	0/1:109:63,46:63:2251:46:1648:-115.795,0,-152.976	0/0:16:16,0:16:576:0:0:0,-4.81648,-47.8359	0/1:23:14,9:14:496:9:315:-21.7635,0,-34.4015	0/1:155:104,51:104:3703:51:1812:-115.903,0,-262.62	0/0:275:274,1:274:9805:1:36:0,-79.185,-802.777	0/0:7:7,0:7:252:0:0:0,-2.10721,-21.1138	0/0:438:438,0:438:15636:0:0:0,-131.851,-1285.24	0/1:307:194,113:194:6937:113:4031:-269.156,0,-480.338	0/0:171:169,2:169:6040:2:68:0,-45.0184,-495.173	0/0:267:267,0:267:9550:0:0:0,-80.375,-785.394	0/0:443:443,0:443:15787:0:0:0,-133.356,-1296.88	0/0:305:304,1:304:10870:1:36:0,-88.2159,-885.457	0/0:60:60,0:60:2142:0:0:0,-18.0618,-176.713	0/0:263:263,0:263:9407:0:0:0,-79.1709,-790.557	0/1:174:99,75:99:3529:75:2659:-187.175,0,-238.553	0/1:50:36,14:36:1280:14:496:-29.9228,0,-90.6503	0/1:210:124,85:124:4444:85:3001:-207.044,0,-311.113	0/0:169:169,0:169:6019:0:0:0,-50.8741,-507.525	0/0:450:450,0:450:16073:0:0:0,-135.463,-1344.29	0/0:403:403,0:403:14449:0:0:0,-121.315,-1179.19	0/1:202:109,93:109:3907:93:3332:-239.289,0,-270.826	0/0:167:166,1:166:5938:1:36:0,-46.6737,-498.067	0/1:6:5,1:5:180:1:36:-1.79209,0,-12.7567	0/1:267:149,118:149:5297:118:4205:-296.666,0,-360.933	0/1:255:138,117:138:4952:117:4168:-298.112,0,-340.341	0/0:476:476,0:476:17061:0:0:0,-143.29,-1404.86	0/0:237:237,0:237:8490:0:0:0,-71.3441,-698.478	0/0:141:141,0:141:5055:0:0:0,-42.4452,-414.141	0/1:226:108,118:108:3845:118:4206:-310.17,0,-248.323	0/1:330:170,160:170:6077:160:5653:-409.062,0,-397.562	0/0:101:101,0:101:3604:0:0:0,-30.404,-304.82	0/0:183:183,0:183:6460:0:0:0,-55.0885,-541.981	0/0:170:170,0:170:6001:0:0:0,-51.1751,-503.892	0/0:103:103,0:103:3704:0:0:0,-31.0061,-308.183	0/1:168:84,84:84:2994:84:2988:-218.02,0,-199.001	0/1:163:56,107:56:1976:107:3833:-296.096,0,-115.049	0/0:249:249,0:249:8909:0:0:0,-74.9565,-716.167	0/0:230:230,0:230:8231:0:0:0,-69.2369,-676.108
chr04	30520956	.	GCT	GTT,GT	99955.1	PASS	AB=0.372682,0.286208;ABP=2333.64,4369.69;AC=55,44;AF=0.295699,0.236559;AN=186;AO=6171,3148;CIGAR=1M1X1M,1M1D1M;DP=16577;DPB=15526.3;DPRA=30.6574,38.015;EPP=13403.2,6838.81;EPPR=15689.7;GTI=6;LEN=1,1;MEANALT=1.98889,2.30645;MQM=37.4461,44.1039;MQMR=59.5044;NS=93;NUMALT=2;ODDS=0.139681;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=200739,106157;QR=253980;RO=7228;RPL=6171,3148;RPP=13403.2,6838.81;RPPR=15698.4;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13403.2,6838.81;SAR=6171,3148;SRF=1;SRP=15689.7;SRR=7227;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	0/2:81:21,19,41:21:739:19,41:608,1374:-97.2045,-59.6786,-114.026,0,-16.2607,-47.7445	0/1:289:172,117,0:172:6016:117,0:3538,0:-205.307,0,-454.102,-257.084,-489.322,-746.1	0/1:200:113,87,0:113:3940:87,0:2577,0:-152.147,0,-294.518,-186.163,-320.708,-506.566	0/1:331:174,157,0:174:6120:157,0:5231,0:-357.782,0,-451.082,-410.161,-498.344,-908.168	0/2:92:45,10,37:45:1590:10,37:298,1275:-87.0388,-79.0143,-205.492,0,-107.974,-118.405	0/2:124:34,18,72:34:1199:18,72:576,2407:-167.448,-134.309,-226.487,0,-54.2579,-75.9415	0/2:324:98,103,123:98:3421:103,123:3526,4074:-295.782,-48.0397,-295.288,0,-1.02033,-241.226	0/2:254:53,65,135:53:1846:65,135:1959,4457:-316.072,-190.52,-320.859,0,-8.44877,-109.288	0/1:218:110,106,0:110:3860:106,0:3242,0:-200.587,0,-281.883,-233.701,-313.792,-547.533	0/1:256:120,136,0:120:4235:136,0:4609,0:-326.327,0,-304.233,-362.451,-345.173,-707.282	0/2:123:37,29,56:37:1297:29,56:1005,1920:-141.997,-74.7567,-171.48,0,-27.085,-88.5996	0/2:165:47,48,69:47:1668:48,69:1507,2412:-163.45,-68.1666,-189.635,0,-26.5258,-115.166	0/1:158:80,78,0:80:2827:78,0:2325,0:-145.134,0,-207.038,-169.216,-230.518,-399.421	0/1:153:83,68,0:83:2931:68,0:2131,0:-129.251,0,-218.132,-154.236,-238.602,-392.876	0/1:177:92,84,1:92:3271:84,1:2948,36:-206.171,0,-241.305,-231.298,-264.024,-497.559	0/2:120:46,23,51:46:1606:23,51:659,1779:-127.736,-93.7612,-217.375,0,-82.7727,-115.238	0/2:118:37,30,51:37:1311:30,51:893,1609:-109.464,-55.6788,-153.424,0,-41.9007,-91.4438	0/1:134:71,63,0:71:2508:63,0:1915,0:-117.166,0,-185.533,-138.539,-204.498,-342.724	0/2:81:24,19,38:24:841:19,38:597,1304:-88.8382,-52.9661,-115.642,0,-25.3396,-56.9783	0/2:410:175,117,117:175:6156:117,117:3945,3927:-261.603,-3.01095,-468.79,0,-189.737,-465.781	0/2:310:87,75,146:87:3084:75,146:2288,5084:-379.526,-240.279,-468.845,0,-85.7548,-207.228	1/2:133:20,28,85:20:695:28,85:959,2766:-232.978,-163.592,-211.672,-18.8848,0,-49.8074	0/1:160:110,47,3:110:3820:47,3:1609,93:-93.8448,0,-296.427,-119.553,-303.17,-429.197	0/1:229:103,122,4:103:3617:122,4:3813,144:-244.019,0,-257.424,-263.386,-282.513,-556.368	1/2:155:33,45,76:33:1156:45,76:1402,2574:-203.62,-111.893,-192.413,-7.55379,0,-78.7642	0/1:561:285,275,1:285:10008:275,1:9201,21:-632.063,0,-731.474,-716.269,-812.67,-1530.1	0/2:149:53,49,47:53:1869:49,47:1440,1491:-100.773,-12.0612,-149.492,0,-47.5539,-138.052	0/1:100:45,55,0:45:1567:55,0:1694,0:-109.375,0,-111.15,-122.921,-127.706,-250.31	0/1:422:227,195,0:227:8045:195,0:6684,0:-455.496,0,-596.626,-523.83,-655.326,-1178.81	0/2:147:48,36,63:48:1687:36,63:1116,2051:-148.475,-81.5747,-208.015,0,-55.968,-118.338	0/2:199:57,46,96:57:2004:46,96:1604,3283:-244.622,-135.576,-284.851,0,-36.9262,-134.226	0/2:5:2,1,2:2:67:1,2:32,68:-4.90569,-3.2155,-8.33897,0,-3.16271,-4.85382	1/2:16:1,8,7:1:36:8,7:243,240:-33.3639,-16.1603,-16.6923,-14.5163,0,-15.3557	.:.:.:.:.:.:.:.	0/2:10:1,0,9:1:31:0,9:0,305:-23.0209,-23.3219,-25.8096,0,-2.79842,-0.089154	0/1:6:3,3,0:3:108:3,0:85,0:-5.53474,0,-8.26899,-6.43783,-9.17208,-15.2989	0/1:407:192,214,0:192:6778:214,0:7350,0:-518.14,0,-487.497,-575.938,-551.917,-1127.87	0/2:278:68,67,143:68:2376:67,143:2086,4771:-359.385,-229.237,-402.275,0,-42.6337,-150.187	0/1:149:72,75,0:72:2550:75,0:2362,0:-149.397,0,-185.053,-171.071,-207.63,-378.731	0/0:6:6,0,0:6:204:0,0:0,0:0,-1.80618,-18.6924,-1.80618,-18.6924,-18.6924	0/1:241:153,82,5:153:5385:82,5:2508,180:-134.428,0,-413.583,-165.935,-423.721,-602.749	0/2:79:24,17,38:24:862:17,38:542,1285:-95.9513,-64.1315,-129.342,0,-31.33,-58.9206	0/2:202:63,44,92:63:2197:44,92:1337,3050:-223.453,-146.072,-311.487,0,-82.3579,-150.995	0/2:187:62,54,71:62:2190:54,71:1787,2434:-176.268,-54.9849,-217.084,0,-38.4244,-156.991	0/1:142:72,70,0:72:2554:70,0:2377,0:-165.807,0,-187.335,-187.481,-208.407,-395.546	0/1:175:106,68,1:106:3759:68,1:2323,36:-150.333,0,-285.765,-179.34,-303.333,-485.29	0/1:194:98,96,0:98:3443:96,0:2949,0:-184.188,0,-251.489,-213.689,-280.388,-493.762	0/2:261:76,71,112:76:2671:71,112:2429,3743:-275.691,-107.482,-303.521,0,-26.3354,-183.698	0/2:212:62,58,92:62:2178:58,92:1898,3146:-233.382,-103.504,-263.32,0,-28.7535,-149.593	1/2:148:38,50,60:38:1340:50,60:1728,2024:-178.816,-53.4952,-147.557,-27.6363,0,-118.688	0/2:332:99,80,152:99:3507:80,152:2648,5024:-370.534,-193.505,-455.117,0,-78.884,-239.946	0/2:5:3,1,1:3:106:1,1:21,36:-2.07952,-1.47022,-9.79939,0,-7.19045,-8.43944	0/1:280:177,102,0:177:6273:102,0:3147,0:-174.769,0,-480.232,-228.052,-510.937,-739.0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chr04	30520966	.	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chr04	30521036	.	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chr04	30612545	.	A	G	26870.7	PASS	AB=0.385774;ABP=544.726;AC=44;AF=0.234043;AN=188;AO=1872;CIGAR=1X;DP=12130;DPB=12130;DPRA=1.15721;EPP=4068.01;EPPR=22260.6;GTI=6;LEN=1;MEANALT=1.03175;MQM=59.2927;MQMR=59.9861;NS=94;NUMALT=1;ODDS=1.12253;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66737;QR=366506;RO=10254;RPL=0;RPP=4068.01;RPPR=22269.3;RPR=1872;RUN=1;SAF=1872;SAP=4068.01;SAR=0;SRF=10253;SRP=22260.6;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:19,18:19:684:18:644:-47.1525,0,-50.7522	0/0:218:217,1:217:7728:1:36:0,-62.0263,-691.952	0/0:150:150,0:150:5346:0:0:0,-45.1545,-481.272	0/0:127:127,0:127:4564:0:0:0,-38.2308,-410.924	0/1:58:36,22:36:1292:22:777:-52.7906,0,-99.124	0/1:58:36,22:36:1292:22:784:-53.3611,0,-99.124	0/1:109:54,55:54:1936:55:1961:-143.897,0,-141.704	0/1:140:69,71:69:2425:71:2544:-186.434,0,-176.359	0/0:98:97,1:97:3465:1:36:0,-25.9027,-308.445	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/1:98:54,44:54:1936:44:1584:-112.968,0,-145.015	0/1:211:73,138:73:2624:138:4939:-380.404,0,-172.89	0/0:148:148,0:148:5320:0:0:0,-44.5524,-478.931	0/0:172:172,0:172:6152:0:0:0,-51.7772,-553.777	0/0:135:135,0:135:4852:0:0:0,-40.639,-436.832	0/1:171:108,63:108:3880:63:2256:-151.629,0,-297.917	0/1:112:63,49:63:2230:49:1764:-125.204,0,-167.217	0/0:125:125,0:125:4476:0:0:0,-37.6287,-403.009	0/1:452:379,73:379:13464:73:2616:-99.6054,0,-1075.47	0/1:115:68,47:68:2402:47:1688:-117.376,0,-181.816	0/1:180:115,65:115:4094:65:2324:-154.972,0,-314.452	0/1:39:22,17:22:784:17:600:-42.5783,0,-59.1437	0/0:161:161,0:161:5704:0:0:0,-48.4658,-513.478	0/0:93:87,6:87:3108:6:216:0,-8.20528,-260.157	0/1:47:17,30:17:604:30:1079:-83.2431,0,-40.5422	0/0:280:280,0:280:10019:0:0:0,-84.2884,-901.641	0/1:401:247,154:247:8837:154:5472:-371.816,0,-674.602	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:144:144,0:144:5149:0:0:0,-43.3483,-463.55	0/1:88:67,21:67:2381:21:741:-40.521,0,-188.056	0/1:90:65,25:65:2317:25:896:-53.85,0,-181.681	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:40:35,5:35:1256:5:180:-4.51087,0,-101.304	0/0:81:81,0:81:2889:0:0:0,-24.3834,-260.245	0/1:18:10,8:10:360:8:288:-20.7627,0,-27.3258	0/0:30:30,0:30:1060:0:0:0,-9.0309,-95.7113	0/0:319:318,1:318:11348:1:36:0,-92.4303,-1017.6	0/1:63:43,20:43:1548:20:716:-45.8028,0,-120.648	0/0:212:212,0:212:7612:0:0:0,-63.8184,-685.114	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:119:117,2:117:4163:2:72:0,-28.9858,-368.013	0/1:73:38,35:38:1368:35:1256:-91.3454,0,-101.446	0/1:116:71,45:71:2536:45:1597:-108.905,0,-193.382	0/1:265:209,56:209:7497:56:1997:-100.225,0,-594.995	0/0:131:130,0:130:4652:0:0:0,-39.1339,-418.483	0/0:97:96,1:96:3437:1:36:0,-25.6016,-305.943	0/0:81:80,1:80:2876:1:36:0,-20.7852,-255.478	0/1:64:33,31:33:1188:31:1112:-81.0783,0,-87.9627	0/1:66:37,29:37:1324:29:1035:-73.5937,0,-99.5941	0/1:90:52,38:52:1838:38:1368:-96.3105,0,-138.604	0/1:107:38,68:38:1345:68:2425:-186.228,0,-89.0793	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/0:195:195,0:195:6958:0:0:0,-58.7008,-626.284	0/1:85:59,26:59:2108:26:924:-57.7815,0,-164.402	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:136:135,1:135:4844:1:36:0,-37.3418,-432.515	0/1:59:52,7:52:1860:7:252:-5.26819,0,-149.919	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/1:16:10,6:10:356:6:212:-14.6083,0,-27.5648	0/1:69:39,30:39:1396:30:1059:-74.8086,0,-105.168	0/0:399:397,1:397:14253:1:36:0,-116.571,-1278.92	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:81:80,1:80:2842:1:36:0,-20.7852,-252.417	0/1:118:84,34:84:3024:34:1186:-71.4979,0,-236.868	0/0:96:92,4:92:3300:4:144:0,-15.5853,-283.905	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:135:134,1:134:4762:1:36:0,-37.0408,-425.139	0/0:177:176,1:176:6317:1:36:0,-49.684,-565.02	0/0:89:88,1:88:3149:1:36:0,-23.1934,-280.035	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/1:154:99,55:99:3518:55:1927:-127.333,0,-270.47	0/1:20:15,5:15:540:5:180:-10.5016,0,-42.9159	0/1:76:22,54:22:777:54:1917:-149.822,0,-47.3721	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.115	0/0:222:221,1:221:7906:1:32:0,-63.6372,-708.371	0/0:111:111,0:111:3973:0:0:0,-33.4143,-357.759	0/1:86:48,38:48:1728:38:1334:-94.4365,0,-129.917	0/0:119:118,1:118:4213:1:36:0,-32.2243,-375.752	0/1:43:35,8:35:1256:8:288:-13.3231,0,-100.401	0/1:73:42,31:42:1504:31:1111:-78.3203,0,-113.679	0/1:74:46,28:46:1618:28:989:-67.0412,0,-123.629	0/0:293:292,1:292:10427:1:36:0,-84.6035,-934.749	0/0:246:246,0:246:8812:0:0:0,-74.0534,-793.065	0/0:202:202,0:202:7211:0:0:0,-60.8081,-649.041	0/1:149:92,57:92:3293:57:2040:-138.992,0,-251.734	0/1:186:110,76:110:3937:76:2686:-185.976,0,-298.529	0/0:102:101,0:101:3605:0:0:0,-30.404,-324.295	0/0:718:717,1:717:25692:1:36:0,-212.541,-2307.9	0/0:139:139,0:139:4980:0:0:0,-41.8432,-448.348	0/0:257:257,0:257:9177:0:0:0,-77.3647,-825.903	0/1:152:77,75:77:2741:75:2673:-194.834,0,-201.045	0/1:106:44,62:44:1569:62:2204:-166.691,0,-109.59	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:241:240,1:240:8608:1:36:0,-68.95,-771.028
chr04	30612550	.	C	A	27471.1	PASS	AB=0.387453;ABP=530.898;AC=44;AF=0.234043;AN=188;AO=1877;CIGAR=1X;DP=12089;DPB=12089;DPRA=0.75948;EPP=4078.86;EPPR=22160.7;GTI=6;LEN=1;MEANALT=1.01852;MQM=59.2941;MQMR=59.9854;NS=94;NUMALT=1;ODDS=0.341115;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67219;QR=364770;RO=10208;RPL=0;RPP=4078.86;RPPR=22169.4;RPR=1877;RUN=1;SAF=1877;SAP=4078.86;SAR=0;SRF=10207;SRP=22160.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:19,18:19:684:18:633:-46.157,0,-50.7522	0/0:215:215,0:215:7720:0:0:0,-64.7214,-694.83	0/0:149:149,0:149:5308:0:0:0,-44.8535,-477.855	0/0:124:124,0:124:4436:0:0:0,-37.3277,-399.412	0/1:59:37,22:37:1316:22:777:-52.4896,0,-100.981	0/1:58:36,22:36:1292:22:788:-53.7219,0,-99.124	0/1:108:53,55:53:1896:55:1971:-145.102,0,-138.407	0/1:140:68,72:68:2428:72:2592:-190.762,0,-176.632	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.034	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:100:53,46:53:1904:46:1652:-118.424,0,-141.476	0/1:210:72,138:72:2566:138:4952:-381.835,0,-167.973	0/0:145:145,0:145:5186:0:0:0,-43.6493,-466.879	0/0:170:170,0:170:6054:0:0:0,-51.1751,-544.966	0/0:134:134,0:134:4795:0:0:0,-40.338,-431.706	0/1:170:107,63:107:3813:63:2264:-152.649,0,-292.192	0/1:115:65,50:65:2309:50:1784:-126.102,0,-173.422	0/0:123:123,0:123:4387:0:0:0,-37.0267,-395.004	0/1:454:383,71:383:13683:71:2548:-92.886,0,-1094.59	0/1:116:69,47:69:2464:47:1680:-116.355,0,-187.095	0/1:178:115,63:115:4116:63:2264:-150.194,0,-317.035	0/1:37:20,17:20:720:17:611:-44.1765,0,-53.9907	0/0:160:159,0:159:5684:0:0:0,-47.8638,-511.32	0/0:91:86,5:86:3059:5:180:0,-10.8417,-258.988	0/1:47:17,30:17:608:30:1066:-82.0711,0,-40.9036	0/0:273:273,0:273:9769:0:0:0,-82.1812,-879.156	0/1:403:248,155:248:8867:155:5524:-375.89,0,-676.662	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:143:142,1:142:5066:1:36:0,-39.449,-452.487	0/1:88:66,22:66:2376:22:784:-44.3933,0,-187.607	0/1:90:64,26:64:2304:26:921:-56.1052,0,-180.512	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:40:35,5:35:1252:5:180:-4.51087,0,-100.944	0/0:82:82,0:82:2911:0:0:0,-24.6845,-262.226	0/1:18:10,8:10:356:8:288:-20.7627,0,-26.9627	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/0:315:315,0:315:11222:0:0:0,-94.8244,-1009.87	0/1:64:44,20:44:1568:20:716:-45.5018,0,-122.146	0/0:213:213,0:213:7623:0:0:0,-64.1194,-686.107	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:120:118,2:118:4228:2:72:0,-29.2869,-373.863	0/1:73:38,35:38:1355:35:1260:-91.7056,0,-100.275	0/1:117:72,45:72:2563:45:1616:-110.316,0,-195.612	0/1:268:209,59:209:7430:59:2124:-110.743,0,-588.072	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.444	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.392	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:65:34,31:34:1216:31:1096:-79.3279,0,-90.1796	0/1:67:37,30:37:1320:30:1076:-76.9732,0,-98.9329	0/1:89:51,38:51:1828:38:1349:-94.899,0,-138.009	0/1:111:40,71:40:1436:71:2548:-196.149,0,-96.1233	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:193:193,0:193:6881:0:0:0,-58.0988,-619.36	0/1:84:58,26:58:2088:26:936:-59.1643,0,-162.903	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:138:138,0:138:4944:0:0:0,-41.5421,-445.109	0/1:59:52,7:52:1868:7:252:-5.26819,0,-150.638	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	0/1:69:40,29:40:1440:29:1032:-72.3869,0,-109.127	0/0:393:392,0:392:14028:0:0:0,-118.004,-1261.93	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/0:82:81,1:81:2876:1:36:0,-21.0862,-255.48	0/1:117:83,34:83:2955:34:1224:-75.2252,0,-230.963	0/0:93:89,4:89:3188:4:144:0,-14.6822,-273.83	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:133:132,1:132:4716:1:36:0,-36.4387,-421.002	0/0:173:172,1:172:6151:1:36:0,-48.4799,-550.091	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.425	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:150:96,54:96:3439:54:1940:-129.71,0,-264.568	0/1:20:15,5:15:536:5:180:-10.5016,0,-42.5542	0/1:76:22,54:22:788:54:1944:-152.211,0,-48.3665	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:227:226,1:226:8064:1:36:0,-64.755,-722.204	0/0:109:109,0:109:3903:0:0:0,-32.8123,-351.463	0/1:89:49,40:49:1748:40:1432:-102.345,0,-130.813	0/0:118:117,1:117:4172:1:36:0,-31.9233,-372.066	0/1:45:37,8:37:1320:8:288:-12.7211,0,-105.556	0/1:74:42,32:42:1492:32:1152:-81.6963,0,-112.298	0/1:75:46,29:46:1639:29:1021:-69.6229,0,-125.221	0/0:288:288,0:288:10352:0:0:0,-86.6966,-931.596	0/0:240:240,0:240:8553:0:0:0,-72.2472,-769.77	0/0:201:200,0:200:7132:0:0:0,-60.206,-641.579	0/1:149:91,58:91:3260:58:2084:-142.949,0,-248.767	0/1:189:112,77:112:4011:77:2753:-191.094,0,-304.284	0/0:101:101,0:101:3603:0:0:0,-30.404,-324.477	0/0:721:721,0:721:25806:0:0:0,-217.043,-2321.76	0/0:142:141,1:141:5034:1:36:0,-39.148,-449.608	0/0:257:257,0:257:9128:0:0:0,-77.3647,-821.499	0/1:152:75,77:75:2650:77:2757:-202.261,0,-192.99	0/1:105:44,61:44:1576:61:2188:-165.556,0,-110.523	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:242:242,0:242:8639:0:0:0,-72.8493,-777.417
chr04	30612612	.	CGGA	TGGC,CGGC	104278	PASS	AB=0.393532,0.600168;ABP=237.439,210.517;AC=145,43;AF=0.771277,0.228723;AN=188;AO=3447,1439;CIGAR=1X2M1X,3M1X;DP=4912;DPB=4911.75;DPRA=0,1.08403;EPP=7488.08,3127.76;EPPR=7.35324;GTI=4;LEN=4,1;MEANALT=1.79787,2.31373;MQM=59.5576,59.9819;MQMR=60;NS=94;NUMALT=2;ODDS=0.309882;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=122401,51484;QR=65;RO=2;RPL=3447,1439;RPP=7488.08,3127.76;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=7488.08,3127.76;SAR=3447,1439;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,14,11:0:0:14,11:500,396:-73.4285,-32.6714,-28.457,-41.1156,0,-37.8043	1/1:53:0,53,0:0:0:53,0:1897,0:-170.981,-15.9546,0,-170.981,-15.9546,-170.981	1/1:47:0,47,0:0:0:47,0:1683,0:-151.756,-14.1484,0,-151.756,-14.1484,-151.756	1/1:160:0,159,0:0:0:159,0:5677,0:-510.524,-47.8638,0,-510.524,-47.8638,-510.524	1/2:44:0,15,29:0:0:15,29:540,1044:-129.606,-85.5449,-81.0295,-44.4211,0,-35.6912	1/2:40:0,11,28:0:0:11,28:393,1008:-114.289,-82.2477,-78.9364,-32.0401,0,-23.6112	1/2:66:0,25,41:0:0:25,41:891,1472:-193.051,-120.434,-112.908,-72.9746,0,-60.6323	1/2:73:0,27,46:0:0:27,46:957,1652:-213.074,-135.121,-126.993,-78.309,0,-64.4616	1/1:42:0,42,0:0:0:42,0:1499,0:-135.13,-12.6433,0,-135.13,-12.6433,-135.13	1/1:32:0,32,0:0:0:32,0:1137,0:-102.639,-9.63296,0,-102.639,-9.63296,-102.639	1/2:60:0,28,32:0:0:28,32:1000,1148:-175.521,-93.9969,-85.568,-81.8816,0,-72.2487	1/2:86:0,45,41:0:0:45,41:1599,1468:-250.345,-120.074,-106.528,-130.628,0,-118.286	1/1:63:0,63,0:0:0:63,0:2231,0:-201.036,-18.9649,0,-201.036,-18.9649,-201.036	1/1:51:0,49,1:0:0:49,1:1729,36:-155.49,-14.7505,0,-152.552,-11.8131,-152.251	1/1:62:0,61,1:0:0:61,1:2169,36:-195.115,-18.3628,0,-192.177,-15.0656,-191.876	1/2:122:0,46,75:0:0:46,75:1634,2673:-350.989,-217.877,-204.03,-133.108,0,-110.53	1/2:75:0,24,50:0:0:24,50:853,1796:-216.001,-146.511,-139.286,-69.4865,0,-54.435	1/1:51:0,51,0:0:0:51,0:1815,0:-163.545,-15.3525,0,-163.545,-15.3525,-163.545	1/2:119:2,20,96:2:65:20,96:698,3456:-332.929,-276.769,-275.994,-51.5307,0,-27.8757	1/2:72:0,34,38:0:0:34,38:1201,1364:-209.418,-111.622,-101.387,-98.1526,0,-86.7135	1/2:48:0,21,27:0:0:21,27:737,960:-138.561,-78.5885,-72.2668,-60.3257,0,-52.1979	1/2:20:0,5,14:0:0:5,14:172,504:-55.0887,-41.1238,-39.6187,-13.9555,0,-9.7411	1/1:17:0,16,1:0:0:16,1:573,36:-51.5443,-4.81648,0,-48.6068,-1.51924,-48.3057	1/1:32:0,31,1:0:0:31,1:1097,36:-98.662,-9.33193,0,-95.7244,-6.03469,-95.4234	1/2:29:0,10,19:0:0:10,19:356,680:-84.8153,-55.8096,-52.7993,-29.3621,0,-23.6425	1/1:109:0,108,0:0:0:108,0:3820,0:-343.611,-32.5112,0,-343.611,-32.5112,-343.611	1/2:82:0,39,43:0:0:39,43:1373,1548:-238.423,-126.664,-114.924,-112.115,0,-99.1706	1/1:47:0,47,0:0:0:47,0:1675,0:-151.027,-14.1484,0,-151.027,-14.1484,-151.027	1/1:130:0,130,0:0:0:130,0:4626,0:-416.498,-39.1339,0,-416.498,-39.1339,-416.498	1/2:30:0,12,18:0:0:12,18:419,648:-87.3087,-53.2333,-49.621,-34.4287,0,-29.0101	1/2:55:0,24,30:0:0:24,30:844,1065:-155.47,-86.7692,-79.5445,-68.6939,0,-59.663	1/1:7:0,7,0:0:0:7,0:251,0:-22.9379,-2.10721,0,-22.9379,-2.10721,-22.9379	1/2:8:0,3,5:0:0:3,5:108,180:-23.8592,-15.0469,-14.1438,-9.17208,0,-7.66693	1/1:17:0,17,0:0:0:17,0:596,0:-53.9421,-5.11751,0,-53.9421,-5.11751,-53.9421	1/2:6:0,2,4:0:0:2,4:72,140:-17.6186,-11.7405,-11.1384,-6.23466,0,-5.03054	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:124:0,124,0:0:0:124,0:4404,0:-396.515,-37.3277,0,-396.515,-37.3277,-396.515	1/2:21:0,7,14:0:0:7,14:248,496:-60.9258,-40.7516,-38.6444,-20.5279,0,-16.3135	1/1:58:0,58,0:0:0:58,0:2042,0:-183.809,-17.4597,0,-183.809,-17.4597,-183.809	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:76:0,75,1:0:0:75,1:2639,36:-237.36,-22.5773,0,-234.422,-19.28,-234.121	1/2:54:0,23,30:0:0:23,30:826,1080:-155.502,-88.1225,-81.1988,-67.3789,0,-58.348	1/2:57:0,27,30:0:0:27,30:958,1076:-166.133,-88.122,-79.9941,-78.367,0,-69.3361	1/2:96:0,42,53:0:0:42,53:1470,1885:-273.31,-153.72,-141.077,-119.689,0,-103.735	1/1:63:0,63,0:0:0:63,0:2235,0:-201.406,-18.9649,0,-201.406,-18.9649,-201.406	1/1:35:0,32,0:0:0:32,0:1147,0:-103.229,-9.63296,0,-103.229,-9.63296,-103.229	1/1:37:0,37,0:0:0:37,0:1319,0:-118.959,-11.1381,0,-118.959,-11.1381,-118.959	1/2:69:0,25,44:0:0:25,44:899,1576:-202.23,-128.886,-121.36,-73.7028,0,-60.4575	1/2:27:0,15,12:0:0:15,12:535,432:-79.2113,-35.6088,-31.0934,-43.9608,0,-40.3485	1/2:41:0,18,23:0:0:18,23:645,824:-120.159,-67.5596,-62.1411,-52.958,0,-46.0343	1/2:78:0,35,43:0:0:35,43:1245,1536:-227.049,-125.589,-115.053,-101.817,0,-88.8725	1/1:5:0,5,0:0:0:5,0:172,0:-15.8167,-1.50515,0,-15.8167,-1.50515,-15.8167	1/1:31:0,31,0:0:0:31,0:1100,0:-99.2841,-9.33193,0,-99.2841,-9.33193,-99.2841	1/2:24:0,5,19:0:0:5,19:179,676:-70.0459,-55.4484,-53.9433,-14.9548,0,-9.23526	1/1:10:0,10,0:0:0:10,0:351,0:-31.9247,-3.0103,0,-31.9247,-3.0103,-31.9247	1/1:44:0,44,0:0:0:44,0:1569,0:-141.498,-13.2453,0,-141.498,-13.2453,-141.498	1/2:41:0,19,22:0:0:19,22:679,788:-119.984,-64.6221,-58.9026,-55.7192,0,-49.0965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chr04	30662814	.	C	T	162922	PASS	AB=0.491864;ABP=5.66045;AC=143;AF=0.760638;AN=188;AO=7743;CIGAR=1X;DP=10148;DPB=10148;DPRA=0;EPP=16359.5;EPPR=666.696;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.6866;MQMR=59.9659;NS=94;NUMALT=1;ODDS=8.12838;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272875;QR=85779;RO=2403;RPL=7690;RPP=16359.5;RPPR=663.601;RPR=53;RUN=1;SAF=0;SAP=16816.7;SAR=7743;SRF=1;SRP=5212.38;SRR=2402;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:20,17:20:720:17:604:-43.5491,0,-53.9907	1/1:244:5,239:5:180:239:8403:-739.711,-56.8993,0	1/1:162:0,162:0:0:162:5724:-515.209,-48.7669,0	1/1:206:1,205:1:36:205:7278:-651.222,-58.4139,0	0/1:80:39,41:39:1391:41:1464:-107.974,0,-101.406	0/1:72:30,42:30:1059:42:1489:-112.628,0,-73.9463	0/1:177:94,83:94:3363:83:2943:-211.804,0,-249.604	1/1:175:0,175:0:0:175:6190:-557.197,-52.6803,0	1/1:86:1,85:1:36:85:2994:-266.062,-22.2903,0	1/1:116:0,116:0:0:116:4070:-366.47,-34.9195,0	0/1:68:32,36:32:1127:36:1261:-93.3171,0,-81.2674	0/1:73:28,45:28:991:45:1608:-123.028,0,-67.5283	1/1:60:0,60:0:0:60:2128:-191.734,-18.0618,0	1/1:69:0,69:0:0:69:2428:-218.762,-20.7711,0	1/1:51:1,50:1:36:50:1780:-156.885,-11.7543,0	0/1:55:34,21:34:1211:21:752:-51.4496,0,-92.7389	0/1:71:45,26:45:1620:26:882:-58.3115,0,-124.717	1/1:55:0,55:0:0:55:1960:-176.672,-16.5567,0	0/1:57:27,30:27:964:30:1029:-75.7112,0,-69.9181	0/1:241:110,131:110:3913:131:4634:-344.629,0,-279.815	0/1:145:79,66:79:2814:66:2329:-166.22,0,-209.85	0/1:141:95,46:95:3399:46:1593:-101.205,0,-263.679	1/1:35:0,35:0:0:35:1244:-112.261,-10.5361,0	1/1:150:13,137:13:468:137:4893:-398.056,-2.69486,0	0/1:82:49,33:49:1743:33:1149:-79.023,0,-132.465	1/1:274:0,274:0:0:274:9559:-860.259,-82.4822,0	0/1:240:110,129:110:3939:129:4530:-335.507,0,-282.395	1/1:19:0,19:0:0:19:676:-61.1634,-5.71957,0	1/1:238:0,238:0:0:238:8333:-749.808,-71.6451,0	0/1:218:108,110:108:3850:110:3878:-283.559,0,-281.071	0/1:182:91,91:91:3246:91:3208:-234.153,0,-237.573	0/1:17:8,9:8:288:9:306:-22.7447,0,-21.1499	0/1:30:15,15:15:540:15:528:-38.8205,0,-39.9056	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	0/1:19:11,8:11:396:8:273:-19.1806,0,-30.2632	1/1:35:0,35:0:0:35:1214:-109.552,-10.5361,0	1/1:147:0,147:0:0:147:5213:-469.291,-44.2514,0	0/1:232:105,127:105:3752:127:4451:-330.815,0,-267.587	1/1:95:0,95:0:0:95:3376:-303.995,-28.5979,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:135:2,133:2:72:133:4702:-416.485,-33.8023,0	0/1:56:18,38:18:648:38:1352:-105.118,0,-41.7942	0/1:146:86,60:86:3058:60:2128:-147.788,0,-231.499	0/1:74:40,34:40:1424:34:1185:-84.6741,0,-106.181	1/1:38:0,38:0:0:38:1352:-121.976,-11.4391,0	1/1:128:0,128:0:0:128:4443:-399.953,-38.5318,0	1/1:147:0,146:0:0:146:5164:-464.594,-43.9504,0	0/1:200:104,96:104:3736:96:3396:-244.945,0,-276.22	0/1:135:66,69:66:2360:69:2441:-179.303,0,-172.02	0/1:161:80,81:80:2855:81:2873:-210.338,0,-208.722	0/1:223:142,81:142:5078:81:2860:-190.503,0,-390.034	0/1:24:10,14:10:351:14:492:-37.3876,0,-24.702	1/1:170:0,170:0:0:170:5967:-537.11,-51.1751,0	0/1:58:31,27:31:1100:27:922:-65.8274,0,-81.8505	1/1:43:0,43:0:0:43:1501:-135.357,-12.9443,0	1/1:137:0,137:0:0:137:4810:-432.822,-41.2411,0	0/1:27:7,20:7:248:20:704:-55.5567,0,-14.5364	1/1:23:0,23:0:0:23:799:-72.2276,-6.92369,0	0/1:31:12,19:12:432:19:657:-50.1152,0,-29.8893	0/1:68:32,36:32:1148:36:1275:-94.5804,0,-83.1598	1/1:112:0,112:0:0:112:3994:-359.612,-33.7154,0	1/1:14:0,14:0:0:14:496:-44.9719,-4.21442,0	1/1:231:0,231:0:0:231:8106:-729.445,-69.5379,0	0/1:222:96,126:96:3412:126:4442:-332.488,0,-240.464	1/1:114:1,113:1:36:113:3963:-352.925,-30.7191,0	1/1:89:0,89:0:0:89:3169:-285.422,-26.7917,0	1/1:170:2,168:2:68:168:5843:-519.359,-44.7174,0	1/1:214:1,213:1:36:213:7476:-669.158,-60.8221,0	1/1:36:0,36:0:0:36:1257:-113.426,-10.8371,0	1/1:81:0,81:0:0:81:2834:-255.299,-24.3834,0	0/1:76:40,36:40:1401:36:1273:-91.9926,0,-103.507	0/1:18:5,13:5:171:13:456:-35.9547,0,-10.3069	0/1:142:63,79:63:2239:79:2798:-209.313,0,-159.027	1/1:103:0,103:0:0:103:3630:-326.889,-31.0061,0	1/1:137:0,137:0:0:137:4835:-435.244,-41.2411,0	1/1:193:0,193:0:0:193:6803:-612.321,-58.0988,0	0/1:146:76,70:76:2732:70:2468:-178.416,0,-202.172	1/1:148:1,147:1:36:147:5198:-464.1,-40.9542,0	0/0:33:30,3:30:1080:3:104:0,-0.231185,-87.8104	0/1:114:56,58:56:2000:58:2008:-146.659,0,-145.956	0/1:126:63,63:63:2256:63:2189:-158.918,0,-165.373	1/1:239:0,239:0:0:239:8472:-762.254,-71.9462,0	1/1:79:1,78:1:36:78:2780:-246.678,-20.1831,0	1/1:52:0,52:0:0:52:1852:-166.954,-15.6536,0	0/1:56:28,28:28:996:28:999:-73.3668,0,-73.0972	0/1:101:53,48:53:1892:48:1710:-123.78,0,-140.154	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:76:0,76:0:0:76:2663:-239.901,-22.8783,0	1/1:62:1,61:1:36:61:2157:-190.784,-15.0656,0	1/1:47:0,47:0:0:47:1667:-150.295,-14.1484,0	0/1:106:57,49:57:2040:49:1749:-125.724,0,-151.963	0/1:62:46,16:46:1648:16:553:-31.4301,0,-129.945	1/1:134:1,133:1:36:133:4721:-421.438,-36.7397,0	1/1:77:1,76:1:36:76:2685:-238.288,-19.581,0
chr04	30663048	.	T	C	73447.8	PASS	AB=0.499137;ABP=3.06649;AC=44;AF=0.234043;AN=188;AO=4358;CIGAR=1X;DP=16758;DPB=16758;DPRA=2.00592;EPP=9370.98;EPPR=26557;GTI=1;LEN=1;MEANALT=1.125;MQM=59.9715;MQMR=59.9927;NS=94;NUMALT=1;ODDS=0.409696;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154968;QR=442074;RO=12392;RPL=4347;RPP=9370.98;RPPR=26557;RPR=11;RUN=1;SAF=0;SAP=9466.29;SAR=4358;SRF=0;SRP=26911.9;SRR=12392;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:25,18:25:888:18:648:-45.7076,0,-67.2947	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:57:57,0:57:2024:0:0:0,-17.1587,-182.428	0/0:139:138,1:138:4909:1:32:0,-38.6439,-438.764	0/1:65:25,40:25:900:40:1407:-107.334,0,-61.7541	0/1:43:18,24:18:644:24:841:-63.0037,0,-45.2876	0/1:88:53,35:53:1900:35:1252:-86.4944,0,-144.787	0/0:172:170,2:170:6072:2:65:0,-45.6079,-540.415	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.823	0/0:93:93,0:93:3313:0:0:0,-27.9958,-298.388	0/1:89:44,45:44:1568:45:1587:-116.328,0,-114.62	0/1:38:18,20:18:640:20:716:-53.3286,0,-46.4902	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:16:6,10:6:212:10:349:-26.9283,0,-14.6083	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:52:31,21:31:1097:21:756:-52.7137,0,-83.3845	0/1:129:58,71:58:2076:71:2527:-188.849,0,-148.278	0/1:129:60,67:60:2156:67:2389:-176.675,0,-155.716	0/1:158:37,121:37:1324:121:4267:-336.646,0,-71.8994	0/0:122:121,1:121:4292:1:36:0,-33.1274,-382.861	0/0:58:57,1:57:2048:1:36:0,-13.8615,-180.993	0/1:50:24,26:24:860:26:924:-68.4262,0,-62.6703	0/0:232:232,0:232:8244:0:0:0,-69.839,-741.972	0/1:144:74,70:74:2652:70:2508:-182.624,0,-195.578	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:231:230,1:230:8168:1:36:0,-65.9397,-731.538	0/1:155:71,84:71:2532:84:3003:-223.841,0,-181.472	0/1:53:32,21:32:1140:21:756:-52.4126,0,-86.9546	0/1:1078:538,540:538:19191:540:19225:-1405.3,0,-1402.24	0/1:710:379,331:379:13592:331:11755:-844.061,0,-1009.33	0/0:1196:1196,0:1196:42574:0:0:0,-360.032,-3830.26	0/1:1632:833,799:833:29653:799:28407:-2064.53,0,-2176.61	0/0:1213:1211,2:1211:43240:2:58:0,-359.641,-3884.64	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:187:76,111:76:2724:111:3975:-301.647,0,-189.11	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/0:620:618,2:618:22071:2:72:0,-179.802,-1978.99	0/0:102:100,2:100:3564:2:72:0,-23.8683,-314.133	0/1:79:39,40:39:1396:40:1406:-103.054,0,-102.158	0/1:144:68,76:68:2420:76:2707:-200.526,0,-174.708	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:96:96,0:96:3401:0:0:0,-28.8989,-306.306	0/0:102:102,0:102:3648:0:0:0,-30.7051,-328.525	0/1:147:82,65:82:2928:65:2300:-163.008,0,-219.499	0/1:73:33,40:33:1180:40:1419:-106.031,0,-84.5329	0/1:68:27,41:27:964:41:1467:-111.855,0,-66.6068	0/1:92:47,45:47:1676:45:1596:-116.234,0,-123.432	0/1:517:279,237:279:9959:237:8434:-603.375,0,-740.561	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.717	0/1:49:25,24:25:896:24:847:-61.7983,0,-66.2099	0/0:668:664,3:664:23622:3:108:0,-191.072,-2115.29	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.048	0/1:51:26,25:26:932:25:865:-62.8102,0,-68.8463	0/0:484:484,0:484:17288:0:0:0,-145.699,-1555.56	0/1:442:233,207:233:8329:207:7340:-527.79,0,-616.597	0/1:50:28,22:28:1004:22:788:-56.1933,0,-75.6244	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:350:349,1:349:12450:1:36:0,-101.762,-1116.74	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:156:67,89:67:2392:89:3165:-238.115,0,-168.577	0/0:18:18,0:18:625:0:0:0,-5.41854,-56.5725	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:150:150,0:150:5326:0:0:0,-45.1545,-479.475	0/0:119:118,1:118:4212:1:36:0,-32.2243,-375.664	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.958	0/0:33:32,1:32:1144:1:36:0,-6.33571,-99.6712	0/1:26:12,14:12:432:14:491:-36.6943,0,-31.3944	0/1:289:165,124:165:5847:124:4377:-307.111,0,-439.349	0/1:129:61,68:61:2176:68:2440:-181.022,0,-157.265	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:160:160,0:160:5716:0:0:0,-48.1648,-514.365	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.792	0/1:109:51,57:51:1824:57:2041:-151.091,0,-131.57	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/1:853:424,429:424:15105:429:15307:-1120.56,0,-1102.4	0/1:92:47,45:47:1688:45:1599:-116.505,0,-124.512	0/1:57:27,30:27:972:30:1056:-78.1908,0,-70.6392	0/0:215:215,0:215:7696:0:0:0,-64.7214,-692.674	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:13:5,8:5:172:8:288:-22.354,0,-11.9046	0/1:60:28,32:28:1000:32:1144:-85.2077,0,-72.2536	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:143:143,0:143:5108:0:0:0,-43.0473,-459.864	0/1:283:146,137:146:5224:137:4872:-353.442,0,-385.107	0/1:33:11,22:11:392:22:784:-60.9499,0,-25.6861	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944
chr04	30697415	.	T	C	145502	PASS	AB=0.506645;ABP=4.42438;AC=145;AF=0.771277;AN=188;AO=6889;CIGAR=1X;DP=8728;DPB=8728;DPRA=0;EPP=14962.3;EPPR=3987.66;GTI=0;LEN=1;MEANALT=1.04255;MQM=53.5564;MQMR=54.0289;NS=94;NUMALT=1;ODDS=9.17842;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245044;QR=64442;RO=1835;RPL=2;RPP=14944.9;RPPR=3978.98;RPR=6887;RUN=1;SAF=2;SAP=14944.9;SAR=6887;SRF=1;SRP=3978.98;SRR=1834;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:31,34:31:1073:34:1216:-89.5978,0,-77.0955	1/1:34:0,34:0:0:34:1209:-108.513,-10.235,0	1/1:118:1,117:1:36:117:4159:-368.712,-31.9323,0	1/1:115:0,115:0:0:115:4064:-364.256,-34.6185,0	0/1:49:16,33:16:556:33:1184:-90.7901,0,-34.78	0/1:80:42,38:42:1458:38:1368:-98.6033,0,-107.146	0/1:91:45,46:45:1585:46:1652:-121.128,0,-115.242	1/1:80:0,80:0:0:80:2843:-254.176,-24.0824,0	1/1:472:0,472:0:0:472:16820:-1502.85,-142.086,0	1/1:73:0,73:0:0:73:2584:-230.64,-21.9752,0	0/1:66:24,42:24:819:42:1495:-114.816,0,-54.1141	0/1:123:65,58:65:2295:58:2063:-147.855,0,-168.999	1/1:74:0,74:0:0:74:2614:-233.945,-22.2762,0	1/1:298:0,298:0:0:298:10518:-942.741,-89.7069,0	1/1:66:0,66:0:0:66:2337:-209.771,-19.868,0	0/1:68:27,41:27:947:41:1464:-110.332,0,-64.839	0/1:47:18,29:18:627:29:1023:-77.9616,0,-42.45	1/1:29:0,29:0:0:29:1040:-93.5706,-8.72987,0	0/1:40:20,20:20:687:20:720:-52.9238,0,-49.7779	0/1:115:68,47:68:2403:47:1684:-116.916,0,-181.343	0/1:104:42,62:42:1472:62:2185:-165.127,0,-101.166	0/1:112:76,36:76:2695:36:1279:-81.5753,0,-208.412	1/1:178:0,178:0:0:178:6352:-570.577,-53.5833,0	1/1:78:3,75:3:108:75:2663:-229.062,-13.4195,0	0/1:88:51,37:51:1812:37:1328:-91.2009,0,-136.254	1/1:216:1,215:1:36:215:7674:-685.979,-61.4252,0	0/1:244:141,103:141:4937:103:3675:-254.962,0,-369.672	1/1:37:0,37:0:0:37:1315:-118.361,-11.1381,0	1/1:177:2,175:2:68:175:6273:-556.108,-46.8246,0	0/1:120:51,69:51:1811:69:2431:-182.318,0,-126.79	0/1:122:47,75:47:1621:75:2696:-205.033,0,-109.327	0/1:8:7,1:7:248:1:36:-1.18493,0,-20.0993	0/1:42:25,17:25:892:17:600:-41.3055,0,-67.7213	1/1:3:0,3:0:0:3:104:-9.67676,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	1/1:33:0,33:0:0:33:1157:-103.955,-9.93399,0	1/1:192:0,192:0:0:192:6826:-613.531,-57.7978,0	0/1:66:29,37:29:1005:37:1298:-96.9555,0,-70.7329	1/1:59:0,59:0:0:59:2099:-188.713,-17.7608,0	1/1:8:0,8:0:0:8:288:-26.2348,-2.40824,0	1/1:145:1,144:1:36:144:5160:-458.773,-40.0511,0	0/1:34:13,21:13:468:21:747:-57.1246,0,-32.1644	0/1:101:44,57:44:1549:57:2035:-152.382,0,-108.757	0/1:60:37,23:37:1281:23:811:-55.0978,0,-97.4268	1/1:58:0,58:0:0:58:2055:-182.915,-17.4597,0	1/1:107:0,107:0:0:107:3814:-342.322,-32.2102,0	1/1:34:0,34:0:0:34:1186:-106.428,-10.235,0	0/1:125:62,63:62:2212:63:2259:-164.482,0,-161.483	0/1:92:44,48:44:1564:48:1716:-126.753,0,-113.095	0/1:116:56,59:56:1959:59:2098:-153.283,0,-141.094	0/1:146:62,84:62:2208:84:3000:-226.128,0,-154.35	0/1:18:13,5:13:440:5:171:-10.2971,0,-34.3941	1/1:72:1,71:1:36:71:2532:-223.585,-18.0849,0	0/1:58:21,37:21:736:37:1332:-102.689,0,-49.075	1/1:7:0,7:0:0:7:252:-22.9711,-2.10721,0	1/1:141:0,141:0:0:141:5010:-449.376,-42.4452,0	0/1:52:29,23:29:1020:23:816:-57.972,0,-76.399	1/1:10:0,10:0:0:10:360:-32.6239,-3.0103,0	0/1:13:7,6:7:252:6:216:-15.8716,0,-19.1091	0/1:99:44,55:44:1556:55:1963:-146.877,0,-109.981	1/1:121:0,120:0:0:120:4239:-380.235,-36.1236,0	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	1/1:142:0,141:0:0:141:5001:-449.382,-42.4452,0	0/1:132:72,60:72:2539:60:2148:-153.551,0,-188.777	1/1:83:2,81:2:72:81:2874:-251.792,-18.422,0	1/1:55:0,55:0:0:55:1941:-174.075,-16.5567,0	1/1:154:1,153:1:36:153:5436:-483.754,-42.7629,0	1/1:121:3,118:3:108:118:4214:-368.355,-26.4411,0	1/1:56:0,56:0:0:56:1999:-179.106,-16.8577,0	1/1:28:1,27:1:36:27:959:-82.5854,-4.83057,0	0/1:57:26,31:26:890:31:1083:-80.5059,0,-63.2336	0/1:29:20,9:20:712:9:324:-20.7571,0,-55.5049	0/1:168:84,84:84:2968:84:2983:-217.261,0,-215.786	1/1:86:0,86:0:0:86:3058:-273.451,-25.8886,0	1/1:284:0,284:0:0:284:10145:-908.393,-85.4925,0	1/1:148:0,148:0:0:148:5277:-472.886,-44.5524,0	0/1:115:46,69:46:1632:69:2445:-184.404,0,-111.2	1/1:81:0,81:0:0:81:2870:-257.173,-24.3834,0	0/1:18:10,8:10:348:8:284:-20.4181,0,-25.9938	0/1:86:35,51:35:1244:51:1810:-136.475,0,-86.2081	0/1:109:54,55:54:1928:55:1947:-141.065,0,-139.908	1/1:146:0,146:0:0:146:5169:-464.341,-43.9504,0	1/1:56:0,56:0:0:56:2007:-180.554,-16.8577,0	1/1:86:0,86:0:0:86:3050:-273.639,-25.8886,0	0/1:37:15,22:15:520:22:769:-58.341,0,-35.9425	0/1:138:61,77:61:2130:77:2752:-205.808,0,-150.294	1/1:22:0,22:0:0:22:780:-70.1431,-6.62266,0	1/1:76:0,76:0:0:76:2689:-240.917,-22.8783,0	1/1:86:0,86:0:0:86:3035:-271.428,-25.8886,0	1/1:80:0,79:0:0:79:2805:-249.09,-23.7814,0	0/1:155:87,68:87:2986:68:2432:-171.621,0,-221.164	0/1:79:51,28:51:1749:28:1000:-66.4507,0,-133.73	1/1:98:1,97:1:36:97:3464:-307.342,-25.9053,0	1/1:113:0,113:0:0:113:4006:-360.106,-34.0164,0
chr04	30697427	.	A	C	33758.1	PASS	AB=0.51334;ABP=9.03561;AC=43;AF=0.228723;AN=188;AO=2016;CIGAR=1X;DP=8987;DPB=8987;DPRA=1.02347;EPP=4380.7;EPPR=15140.3;GTI=0;LEN=1;MEANALT=1;MQM=53.9296;MQMR=53.5229;NS=94;NUMALT=1;ODDS=5.53881;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71914;QR=249396;RO=6971;RPL=1;RPP=4372.02;RPPR=15123;RPR=2015;RUN=1;SAF=1;SAP=4372.02;SAR=2015;SRF=2;SRP=15123;SRR=6969;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:37,37:37:1332:37:1324:-96.8823,0,-97.1921	0/0:34:34,0:34:1224:0:0:0,-10.235,-109.034	0/0:117:116,1:116:4129:1:32:0,-32.0248,-365.944	0/0:119:119,0:119:4254:0:0:0,-35.8226,-381.275	0/1:55:33,22:33:1184:22:777:-52.8212,0,-88.9139	0/1:88:38,50:38:1364:50:1788:-134.319,0,-95.8398	0/1:101:48,53:48:1728:53:1895:-139.956,0,-124.949	0/0:81:81,0:81:2893:0:0:0,-24.3834,-258.719	0/0:475:475,0:475:17008:0:0:0,-142.989,-1518.06	0/0:77:77,0:77:2764:0:0:0,-23.1793,-246.671	0/1:70:42,28:42:1512:28:1004:-69.5372,0,-115.09	0/1:126:59,67:59:2111:67:2389:-176.494,0,-150.948	0/0:73:73,0:73:2624:0:0:0,-21.9752,-234.064	0/0:300:300,0:300:10752:0:0:0,-90.309,-962.081	0/0:67:67,0:67:2399:0:0:0,-20.169,-215.086	0/1:68:40,28:40:1432:28:1008:-70.3119,0,-107.455	0/1:48:29,19:29:1036:19:669:-45.917,0,-78.8125	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.4724	0/1:41:21,20:21:756:20:716:-52.0842,0,-55.8518	0/1:123:46,77:46:1633:77:2755:-210.469,0,-109.876	0/1:102:60,42:60:2145:42:1504:-104.637,0,-161.904	0/1:118:37,81:37:1319:81:2886:-223.996,0,-83.3697	0/0:183:182,1:182:6531:1:36:0,-51.4928,-582.796	0/0:78:75,3:75:2692:3:104:0,-13.789,-232.002	0/1:93:38,55:38:1359:55:1949:-147.028,0,-92.479	0/0:218:217,1:217:7784:1:36:0,-62.0273,-695.767	0/1:256:103,153:103:3691:153:5453:-412.122,0,-252.832	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.117	0/0:179:179,0:179:6417:0:0:0,-53.8844,-575.022	0/1:130:69,61:69:2476:61:2187:-157.547,0,-183.33	0/1:129:75,54:75:2687:54:1944:-135.392,0,-202.73	0/1:8:1,7:1:36:7:252:-20.4613,0,-1.18493	0/1:44:17,27:17:612:27:957:-72.9496,0,-41.7091	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0441	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.363	0/0:194:194,0:194:6949:0:0:0,-58.3998,-624.553	0/1:70:37,33:37:1323:33:1169:-84.1328,0,-97.9827	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.108	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8736	0/0:147:147,0:147:5234:0:0:0,-44.2514,-469.023	0/1:35:21,14:21:738:14:504:-35.0972,0,-56.0147	0/1:114:58,56:58:2088:56:1993:-144.521,0,-153.223	0/1:64:22,42:22:783:42:1503:-116.151,0,-51.3876	0/0:58:58,0:58:2064:0:0:0,-17.4597,-183.441	0/0:108:108,0:108:3868:0:0:0,-32.5112,-347.234	0/0:35:35,0:35:1247:0:0:0,-10.536,-111.879	0/1:128:65,63:65:2340:63:2264:-165.247,0,-170.862	0/1:94:48,46:48:1720:46:1633:-118.766,0,-126.511	0/1:117:60,57:60:2143:57:2037:-147.574,0,-157.001	0/1:149:86,63:86:3079:63:2229:-155.687,0,-232.267	0/1:20:5,15:5:171:15:536:-42.4328,0,-9.695	0/0:75:74,1:74:2636:1:36:0,-18.988,-232.798	0/1:62:37,25:37:1328:25:900:-62.594,0,-101.125	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9711	0/0:142:142,0:142:5083:0:0:0,-42.7463,-455.625	0/1:57:25,32:25:891:32:1137:-85.4055,0,-63.2681	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.8552	0/1:15:5,10:5:180:10:360:-28.2197,0,-12.032	0/1:106:56,50:56:2012:50:1770:-126.979,0,-149.06	0/0:123:123,0:123:4416:0:0:0,-37.0267,-395.654	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.304	0/0:142:142,0:142:5083:0:0:0,-42.7463,-456.93	0/1:140:61,79:61:2179:79:2840:-212.618,0,-153.951	0/0:83:81,2:81:2884:2:70:0,-18.5661,-252.658	0/0:57:57,0:57:2037:0:0:0,-17.1587,-182.687	0/0:153:151,2:151:5415:2:72:0,-39.2258,-478.278	0/0:120:117,3:117:4144:3:108:0,-26.1425,-362.228	0/0:56:56,0:56:2012:0:0:0,-16.8577,-180.267	0/0:29:29,0:29:1035:0:0:0,-8.72987,-92.8262	0/1:60:31,29:31:1116:29:1044:-76.1724,0,-82.57	0/1:31:9,22:9:324:22:775:-60.558,0,-20.155	0/1:175:87,88:87:3124:88:3156:-230.512,0,-227.417	0/0:85:85,0:85:3009:0:0:0,-25.5875,-269.025	0/0:288:288,0:288:10313:0:0:0,-86.6966,-922.867	0/0:149:149,0:149:5316:0:0:0,-44.8535,-476.888	0/1:124:72,52:72:2584:52:1858:-128.538,0,-193.978	0/0:82:82,0:82:2939:0:0:0,-24.6845,-263.064	0/1:21:9,12:9:324:12:408:-30.6183,0,-22.9207	0/1:87:52,35:52:1868:35:1252:-86.6219,0,-141.307	0/1:114:58,56:58:2070:56:2007:-145.764,0,-149.763	0/0:148:148,0:148:5286:0:0:0,-44.5524,-474.468	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.183	0/0:85:85,0:85:3052:0:0:0,-25.5875,-273.906	0/1:42:23,19:23:824:19:667:-47.6337,0,-61.7034	0/1:151:80,71:80:2844:71:2532:-182.44,0,-209.939	0/0:21:21,0:21:743:0:0:0,-6.32163,-66.8227	0/0:77:77,0:77:2732:0:0:0,-23.1793,-244.717	0/0:87:87,0:87:3111:0:0:0,-26.1896,-278.969	0/0:80:80,0:80:2859:0:0:0,-24.0824,-253.814	0/1:163:69,94:69:2436:94:3320:-248.383,0,-169.66	0/1:85:28,57:28:999:57:2033:-157.43,0,-64.5508	0/0:98:97,1:97:3472:1:36:0,-25.9053,-307.986	0/0:116:116,0:116:4122:0:0:0,-34.9195,-370.29
chr04	30759456	.	T	C	32491.1	PASS	AB=0.484936;ABP=9.81408;AC=44;AF=0.234043;AN=188;AO=1697;CIGAR=1X;DP=8083;DPB=8083;DPRA=1.07693;EPP=1904.44;EPPR=11663.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9995;NS=94;NUMALT=1;ODDS=4.9299;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59395;QR=228342;RO=6382;RPL=239;RPP=1904.44;RPPR=11663.1;RPR=1458;RUN=1;SAF=1697;SAP=3688;SAR=0;SRF=6382;SRP=13861.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:20,8:20:716:8:288:-17.8386,0,-56.3389	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/0:140:140,0:140:4994:0:0:0,-42.1442,-449.608	0/0:247:246,1:246:8840:1:36:0,-70.7561,-791.983	0/1:47:26,21:26:932:21:726:-51.5101,0,-70.0505	0/1:52:23,29:23:815:29:1016:-76.0982,0,-58.0172	0/1:125:65,60:65:2316:60:2094:-151.101,0,-171.072	0/0:144:144,0:144:5164:0:0:0,-43.3483,-464.9	0/0:88:87,1:87:3128:1:36:0,-22.8924,-278.147	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/1:47:34,13:34:1220:13:441:-25.8648,0,-95.9584	0/1:61:36,25:36:1254:25:861:-59.4395,0,-94.7953	0/0:79:79,0:79:2818:0:0:0,-23.7814,-253.858	0/0:85:84,0:84:3020:0:0:0,-25.2865,-271.67	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:54:30,24:30:1071:24:852:-60.7448,0,-80.446	0/1:102:43,59:43:1544:59:2061:-155.052,0,-108.548	0/0:90:90,0:90:3201:0:0:0,-27.0927,-288.313	0/1:35:23,12:23:828:12:420:-27.598,0,-64.3081	0/1:197:89,108:89:3192:108:3802:-283.08,0,-228.2	0/1:139:80,59:80:2868:59:2079:-145.537,0,-216.514	0/1:121:43,78:43:1544:78:2715:-208.17,0,-102.828	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:102:98,4:98:3499:4:144:0,-17.3914,-301.807	0/1:81:44,37:44:1584:37:1289:-91.9263,0,-118.468	0/0:194:194,0:194:6943:0:0:0,-58.3998,-624.935	0/1:98:56,42:56:1995:42:1474:-103.452,0,-150.322	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:246:246,0:246:8805:0:0:0,-74.0534,-792.435	0/1:126:60,66:60:2143:66:2338:-172.749,0,-155.207	0/1:66:33,33:33:1184:33:1142:-83.216,0,-87.0003	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:201:201,0:201:7199:0:0:0,-60.507,-647.961	0/1:188:96,92:96:3422:92:3257:-236.76,0,-251.6	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:160:159,1:159:5687:1:36:0,-44.5665,-508.35	0/1:30:21,9:21:722:9:307:-18.9293,0,-56.2641	0/1:133:70,63:70:2507:63:2205:-158.678,0,-185.845	0/1:55:27,28:27:972:28:973:-71.3234,0,-71.2413	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.638	0/0:61:60,1:60:2144:1:36:0,-14.7646,-189.629	0/0:120:118,2:118:4224:2:72:0,-29.2869,-373.503	0/1:142:78,64:78:2795:64:2259:-160.827,0,-209.043	0/1:117:48,69:48:1696:69:2407:-181.666,0,-117.703	0/1:99:57,42:57:2052:42:1465:-102.34,0,-155.149	0/1:149:75,74:75:2684:74:2588:-188.318,0,-196.952	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:139:138,1:138:4948:1:36:0,-38.2449,-441.871	0/1:47:27,20:27:968:20:712:-50.2582,0,-73.289	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:140:140,0:140:4999:0:0:0,-42.1442,-450.058	0/1:31:20,11:20:711:11:388:-25.9254,0,-54.9837	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:19:5,14:5:180:14:478:-37.6246,0,-10.8325	0/1:39:21,18:21:752:18:631:-45.3755,0,-56.2661	0/0:135:133,2:133:4751:2:68:0,-34.1813,-421.288	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:122:122,0:122:4359:0:0:0,-36.7257,-392.485	0/1:164:74,90:74:2647:90:3162:-235.436,0,-189.107	0/0:70:67,3:67:2404:3:108:0,-10.9969,-206.541	0/0:64:64,0:64:2286:0:0:0,-19.2659,-206	0/0:81:80,1:80:2843:1:36:0,-20.7852,-252.511	0/0:117:116,1:116:4160:1:36:0,-31.6222,-370.982	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:74:45,29:45:1602:29:1009:-68.8425,0,-122.192	0/1:20:9,11:9:320:11:392:-29.5995,0,-23.1218	0/1:112:83,29:83:2972:29:1010:-57.4942,0,-233.997	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/0:146:143,0:143:5128:0:0:0,-43.0473,-461.301	0/0:201:201,0:201:7199:0:0:0,-60.507,-647.964	0/1:80:34,46:34:1224:46:1593:-119.575,0,-86.3846	0/0:112:111,1:111:3959:1:36:0,-30.1171,-352.904	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:112:64,48:64:2296:48:1687:-118.4,0,-173.186	0/1:96:57,39:57:2039:39:1383:-95.8692,0,-154.882	0/0:150:149,1:149:5331:1:36:0,-41.5562,-476.325	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.886	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:85:29,56:29:1044:56:1965:-151.535,0,-68.6873	0/1:128:58,70:58:2080:70:2361:-174.213,0,-148.938	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.903	0/0:70:69,1:69:2452:1:36:0,-17.4738,-217.335	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.643	0/1:69:38,31:38:1368:31:1091:-77.7277,0,-102.65	0/1:54:23,31:23:828:31:1074:-80.7084,0,-58.5885	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:108:106,2:106:3812:2:72:0,-25.6745,-336.439
chr04	30759471	.	A	G	134074	PASS	AB=0.499715;ABP=3.01278;AC=144;AF=0.765957;AN=188;AO=6328;CIGAR=1X;DP=8102;DPB=8102;DPRA=0;EPP=13735.4;EPPR=3837.84;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9995;MQMR=60;NS=94;NUMALT=1;ODDS=1.24608;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225045;QR=63326;RO=1770;RPL=6326;RPP=13726.7;RPPR=3837.84;RPR=2;RUN=1;SAF=6327;SAP=13735.4;SAR=1;SRF=1770;SRP=3846.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:9,20:9:320:20:716:-56.0378,0,-20.4125	1/1:108:0,108:0:0:108:3864:-347.956,-32.5112,0	1/1:141:0,141:0:0:141:5001:-450.238,-42.4452,0	1/1:244:1,243:1:36:243:8670:-776.694,-69.853,0	0/1:47:21,26:21:756:26:927:-69.599,0,-54.2188	0/1:52:31,21:31:1108:21:748:-51.9917,0,-84.3774	0/1:126:61,65:61:2192:65:2286:-168.071,0,-159.616	1/1:142:0,142:0:0:142:5029:-452.757,-42.7463,0	1/1:87:1,86:1:36:86:3052:-271.31,-22.5913,0	1/1:74:0,74:0:0:74:2630:-236.947,-22.2762,0	0/1:46:14,32:14:496:32:1152:-90.1428,0,-31.1269	0/1:60:26,34:26:932:34:1212:-91.3245,0,-66.1371	1/1:77:0,77:0:0:77:2722:-245.224,-23.1793,0	1/1:83:0,83:0:0:83:2938:-264.655,-24.9855,0	1/1:73:0,73:0:0:73:2574:-231.91,-21.9752,0	0/1:52:25,27:25:896:27:963:-71.3324,0,-65.3068	0/1:103:60,43:60:2136:43:1536:-107.527,0,-161.502	1/1:87:0,87:0:0:87:3081:-277.519,-26.1896,0	0/1:37:15,22:15:527:22:792:-60.4676,0,-36.6221	0/1:194:109,85:109:3908:85:3028:-214.349,0,-293.513	0/1:140:61,79:61:2180:79:2828:-212.615,0,-154.322	0/1:127:84,43:84:3012:43:1548:-101.382,0,-233.08	1/1:28:0,28:0:0:28:999:-90.2245,-8.42884,0	1/1:96:4,92:4:144:92:3304:-284.264,-15.5853,0	0/1:79:39,39:39:1400:39:1391:-101.648,0,-102.459	1/1:194:0,194:0:0:194:6924:-623.227,-58.3998,0	0/1:105:50,55:50:1788:55:1942:-143.445,0,-129.594	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	1/1:243:0,243:0:0:243:8639:-777.503,-73.1503,0	0/1:130:69,61:69:2459:61:2173:-156.701,0,-182.43	0/1:68:33,35:33:1180:35:1232:-90.7113,0,-86.038	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:195:0,195:0:0:195:6941:-624.759,-58.7009,0	0/1:191:98,93:98:3520:93:3315:-241.072,0,-259.512	1/1:62:0,62:0:0:62:2202:-198.444,-18.6639,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:156:1,155:1:36:155:5552:-496.206,-43.3624,0	0/1:30:11,19:11:384:19:647:-49.5151,0,-25.8638	0/1:136:67,69:67:2380:69:2459:-180.624,0,-173.518	0/1:58:31,27:31:1112:27:959:-69.1665,0,-82.9316	1/1:60:0,60:0:0:60:2131:-192.058,-18.0618,0	1/1:64:1,63:1:36:63:2205:-195.113,-15.6676,0	1/1:124:1,123:1:36:123:4375:-390.328,-33.7294,0	0/1:148:71,77:71:2532:77:2737:-202.019,0,-183.579	0/1:117:69,48:69:2471:48:1714:-119.324,0,-187.423	0/1:105:46,59:46:1656:59:2103:-157.931,0,-117.72	0/1:148:74,74:74:2656:74:2645:-193.742,0,-194.733	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:137:1,136:1:36:136:4828:-431.077,-37.6428,0	0/1:46:20,26:20:711:26:932:-70.3515,0,-50.4683	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:140:0,137:0:0:137:4893:-440.161,-41.2411,0	0/1:30:11,19:11:392:19:669:-51.5039,0,-26.5892	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:19:14,5:14:500:5:176:-10.4654,0,-39.6166	0/1:38:18,20:18:644:20:720:-53.6896,0,-46.8515	1/1:133:1,132:1:36:132:4682:-417.946,-36.4387,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:126:0,126:0:0:126:4467:-402.199,-37.9298,0	0/1:169:93,76:93:3312:76:2707:-193,0,-247.426	1/1:71:3,68:3:99:68:2423:-209.089,-12.1366,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:79:1,78:1:36:78:2757:-244.772,-20.1831,0	1/1:119:0,119:0:0:119:4194:-377.642,-35.8226,0	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	1/1:71:0,71:0:0:71:2508:-225.971,-21.3731,0	0/1:75:32,43:32:1144:43:1520:-114.516,0,-80.6923	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:115:31,84:31:1107:84:3002:-235.793,0,-65.3217	1/1:67:0,67:0:0:67:2395:-215.806,-20.169,0	1/1:144:0,144:0:0:144:5116:-460.582,-43.3483,0	1/1:196:0,196:0:0:196:7011:-631.053,-59.0019,0	0/1:81:47,34:47:1688:34:1200:-83.9194,0,-127.824	1/1:115:1,114:1:36:114:4077:-363.516,-31.0202,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:114:50,64:50:1796:64:2288:-171.864,0,-127.605	0/1:100:42,58:42:1512:58:2084:-157.727,0,-106.272	1/1:151:1,150:1:36:150:5366:-479.473,-41.8573,0	1/1:94:0,94:0:0:94:3323:-299.288,-28.2968,0	1/1:64:0,64:0:0:64:2235:-201.412,-19.2659,0	0/1:88:59,29:59:2108:29:1032:-66.7028,0,-163.499	0/1:126:69,57:69:2472:57:2008:-143.061,0,-184.804	1/1:52:0,52:0:0:52:1828:-164.799,-15.6536,0	1/1:82:0,82:0:0:82:2876:-259.078,-24.6845,0	1/1:70:0,70:0:0:70:2496:-224.893,-21.0721,0	1/1:48:0,48:0:0:48:1677:-151.214,-14.4494,0	0/1:69:32,37:32:1144:37:1306:-97.0689,0,-82.4984	0/1:55:32,23:32:1148:23:820:-57.5659,0,-87.0732	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:106:1,105:1:36:105:3748:-333.923,-28.3109,0
chr04	30786098	.	T	G	153326	PASS	AB=0.476762;ABP=24.1026;AC=143;AF=0.760638;AN=188;AO=7247;CIGAR=1X;DP=9619;DPB=9619;DPRA=0;EPP=15739.7;EPPR=5136.37;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.7102;MQMR=59.9299;NS=94;NUMALT=1;ODDS=1.11981;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=259039;QR=84750;RO=2368;RPL=7247;RPP=15739.7;RPPR=5136.37;RPR=0;RUN=1;SAF=0;SAP=15739.7;SAR=7247;SRF=0;SRP=5145.06;SRR=2368;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:18,15:18:629:15:532:-38.2463,0,-46.9998	1/1:199:0,199:0:0:199:7105:-639.485,-59.905,0	1/1:129:1,128:1:36:128:4579:-408.662,-35.2346,0	1/1:205:0,205:0:0:205:7312:-658.068,-61.7112,0	0/1:77:43,34:43:1536:34:1224:-87.2816,0,-115.354	0/1:49:20,29:20:720:29:1044:-79.5243,0,-50.3783	0/1:149:74,75:74:2645:75:2674:-196.023,0,-193.441	1/1:168:1,167:1:36:167:5966:-533.37,-46.9748,0	1/1:83:0,83:0:0:83:2967:-267.23,-24.9855,0	1/1:106:0,106:0:0:106:3768:-339.237,-31.9092,0	0/1:75:41,34:41:1472:34:1211:-86.7159,0,-110.194	0/1:71:43,28:43:1532:28:1008:-69.66,0,-116.8	1/1:62:1,61:1:36:61:2184:-193.181,-15.0656,0	1/1:126:0,126:0:0:126:4515:-406.442,-37.9298,0	1/1:48:0,48:0:0:48:1716:-154.683,-14.4494,0	0/1:74:34,40:34:1216:40:1440:-107.618,0,-87.4703	0/1:73:29,44:29:1040:44:1580:-120.515,0,-71.1595	1/1:54:0,54:0:0:54:1944:-175.234,-16.2556,0	0/1:58:23,35:23:828:35:1256:-95.8775,0,-57.3844	0/1:159:80,79:80:2846:79:2828:-206.799,0,-208.501	0/1:132:61,71:61:2188:71:2517:-187.041,0,-157.445	0/1:143:108,35:108:3867:35:1246:-68.7949,0,-305.177	1/1:30:0,30:0:0:30:1080:-97.4222,-9.0309,0	0/1:94:9,85:9:324:85:3056:-246.836,0,-1.20903	0/1:75:33,42:33:1184:42:1485:-111.365,0,-84.2911	1/1:318:0,318:0:0:318:11354:-1021.7,-95.7275,0	0/1:161:83,78:83:2984:78:2783:-202.238,0,-220.321	1/1:41:0,41:0:0:41:1460:-131.693,-12.3422,0	1/1:175:0,175:0:0:175:6217:-559.597,-52.6803,0	0/1:179:89,90:89:3192:90:3216:-235.776,0,-233.619	0/1:119:74,45:74:2644:45:1616:-109.905,0,-202.384	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:35:18,17:18:640:17:608:-44.5144,0,-47.3933	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:15:0,15:0:0:15:540:-48.9356,-4.51545,0	1/1:218:0,218:0:0:218:7808:-702.164,-65.6245,0	0/1:239:111,128:111:3935:128:4575:-339.849,0,-282.393	1/1:95:0,95:0:0:95:3386:-304.949,-28.5979,0	1/1:3:0,3:0:0:3:108:-10.0031,-0.90309,0	1/1:101:4,96:4:144:96:3415:-294.242,-17.1492,0	0/1:49:25,24:25:900:24:847:-61.7952,0,-66.569	0/1:159:77,82:77:2749:82:2944:-217.256,0,-199.787	0/1:70:46,24:46:1656:24:860:-56.645,0,-128.256	1/1:72:0,72:0:0:72:2580:-232.445,-21.6742,0	1/1:117:0,117:0:0:117:4180:-376.325,-35.2205,0	1/1:125:0,125:0:0:125:4468:-402.282,-37.6288,0	0/1:207:139,68:139:4973:68:2440:-157.213,0,-385.402	0/1:93:54,39:54:1932:39:1404:-98.6532,0,-146.161	0/1:93:62,31:62:2228:31:1108:-72.0329,0,-172.788	0/1:202:99,103:99:3541:103:3700:-272.39,0,-258.087	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:177:1,176:1:36:176:6291:-562.679,-49.684,0	0/1:92:49,43:49:1749:43:1536:-110.812,0,-129.997	1/1:29:0,29:0:0:29:1040:-93.9098,-8.72987,0	1/1:163:0,163:0:0:163:5819:-523.021,-49.0679,0	0/1:29:20,9:20:720:9:320:-20.4101,0,-56.3989	1/1:16:0,16:0:0:16:572:-51.8125,-4.81648,0	0/1:25:14,11:14:504:11:396:-28.4432,0,-38.1723	0/1:106:56,50:56:1993:50:1788:-129.27,0,-147.725	1/1:172:0,171:0:0:171:6131:-551.45,-51.4761,0	1/1:16:0,16:0:0:16:563:-50.9981,-4.81648,0	1/1:155:0,155:0:0:155:5572:-501.588,-46.6597,0	0/1:221:128,93:128:4577:93:3336:-233.912,0,-345.566	1/1:75:2,73:2:72:73:2596:-227.045,-15.7405,0	1/1:69:0,69:0:0:69:2468:-222.336,-20.7711,0	1/1:204:1,203:1:36:203:7230:-647.015,-57.8118,0	1/1:142:0,142:0:0:142:5087:-457.953,-42.7463,0	1/1:37:0,37:0:0:37:1332:-120.178,-11.1381,0	1/1:70:0,70:0:0:70:2507:-225.881,-21.0721,0	0/1:95:51,44:51:1836:44:1561:-112.18,0,-136.923	0/1:29:18,11:18:648:11:392:-26.8902,0,-49.922	0/1:196:99,97:99:3552:97:3476:-253.99,0,-260.873	1/1:56:0,56:0:0:56:1993:-179.569,-16.8577,0	1/1:91:0,91:0:0:91:3238:-291.637,-27.3937,0	1/1:192:1,190:1:36:190:6804:-608.815,-54.2582,0	0/1:139:79,60:79:2821:60:2143:-151.284,0,-212.276	1/1:125:2,123:2:72:123:4412:-390.317,-30.792,0	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/1:114:55,59:55:1972:59:2116:-156.387,0,-143.168	0/1:87:32,55:32:1129:55:1945:-149.132,0,-75.7267	1/1:233:1,231:1:36:231:8240:-737.957,-66.6005,0	1/1:106:0,106:0:0:106:3804:-342.548,-31.9092,0	1/1:71:0,71:0:0:71:2544:-229.186,-21.3731,0	0/1:81:37,44:37:1332:44:1559:-116.21,0,-95.7813	0/1:134:73,61:73:2620:61:2188:-156.808,0,-195.697	1/1:41:0,41:0:0:41:1463:-131.963,-12.3422,0	1/1:75:0,75:0:0:75:2679:-241.351,-22.5773,0	1/1:81:0,81:0:0:81:2895:-260.769,-24.3834,0	1/1:89:0,89:0:0:89:3179:-286.328,-26.7917,0	0/1:172:78,94:78:2800:94:3359:-250.713,0,-200.462	0/1:64:50,14:50:1800:14:496:-25.7074,0,-143.016	1/1:63:0,63:0:0:63:2242:-202.04,-18.9649,0	1/1:83:0,83:0:0:83:2973:-267.789,-24.9855,0
chr04	30786228	.	T	C	100989	PASS	AB=0.518008;ABP=10.9877;AC=144;AF=0.765957;AN=188;AO=5060;CIGAR=1X;DP=6441;DPB=6441;DPRA=0;EPP=10990.7;EPPR=2995.3;GTI=1;LEN=1;MEANALT=1.03191;MQM=40.9561;MQMR=59.6829;NS=94;NUMALT=1;ODDS=1.41587;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179946;QR=48800;RO=1378;RPL=0;RPP=10990.7;RPPR=2995.3;RPR=5060;RUN=1;SAF=0;SAP=10990.7;SAR=5060;SRF=0;SRP=2995.3;SRR=1378;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:14,14:14:485:14:496:-34.3291,0,-35.4391	1/1:44:0,44:0:0:44:1563:-136.517,-13.2453,0	1/1:150:0,150:0:0:150:5316:-458.865,-45.1545,0	1/1:118:0,118:0:0:118:4174:-362.897,-35.5215,0	0/1:14:5,9:5:172:9:320:-23.8224,0,-11.6036	0/1:21:10,11:10:352:11:392:-27.678,0,-25.6966	0/1:61:31,30:31:1078:30:1068:-75.573,0,-78.9611	1/1:86:0,86:0:0:86:3071:-266.512,-25.8886,0	1/1:80:0,80:0:0:80:2850:-246.638,-24.0824,0	1/1:53:0,53:0:0:53:1888:-165.036,-15.9546,0	0/1:72:33,39:33:1175:39:1388:-98.9168,0,-84.3804	0/1:88:46,42:46:1597:42:1487:-101.255,0,-117.518	1/1:74:0,74:0:0:74:2619:-226.821,-22.2762,0	1/1:163:0,163:0:0:163:5740:-494.271,-49.0679,0	1/1:61:0,61:0:0:61:2167:-187.277,-18.3628,0	0/1:69:37,32:37:1292:32:1140:-78.127,0,-95.8037	0/1:53:24,29:24:855:29:1031:-74.3218,0,-61.3156	1/1:28:0,28:0:0:28:1004:-87.0888,-8.42884,0	0/1:21:11,10:11:388:10:341:-23.7901,0,-28.9357	0/1:64:27,37:27:964:37:1309:-95.7699,0,-67.8086	0/1:107:43,64:43:1523:64:2270:-162.946,0,-105.135	0/1:87:67,20:67:2408:20:720:-37.784,0,-190.743	1/1:86:0,86:0:0:86:3052:-265.73,-25.8886,0	1/1:46:4,42:4:144:42:1477:-114.365,-0.538482,0	0/1:44:18,26:18:644:26:917:-64.6424,0,-44.9058	1/1:155:0,155:0:0:155:5500:-483.354,-46.6597,0	0/1:148:56,92:56:1984:92:3288:-238.395,0,-134.271	1/1:19:0,19:0:0:19:672:-57.8883,-5.71957,0	1/1:112:1,111:1:36:111:3975:-346.36,-30.1171,0	0/1:130:53,77:53:1878:77:2725:-195.955,0,-130.164	0/1:82:30,51:30:1048:51:1811:-131.899,0,-69.8992	0/1:5:2,3:2:72:3:108:-8.29686,0,-5.33157	0/1:15:12,3:12:432:3:108:-5.15712,0,-34.6356	1/1:5:0,5:0:0:5:176:-15.7056,-1.50515,0	0/1:13:9,4:9:324:4:144:-8.96518,0,-25.5891	1/1:7:0,7:0:0:7:248:-21.8876,-2.10721,0	1/1:153:0,153:0:0:153:5461:-481.142,-46.0576,0	0/1:90:39,51:39:1365:51:1836:-131.193,0,-96.0488	1/1:50:0,50:0:0:50:1771:-154.626,-15.0515,0	1/1:2:0,2:0:0:2:68:-6.2611,-0.60206,0	1/1:71:2,69:2:72:69:2443:-204.449,-14.5364,0	0/1:34:18,16:18:640:16:563:-38.0021,0,-47.6943	0/1:94:41,52:41:1435:52:1860:-131.541,0,-100.972	0/1:39:23,16:23:820:16:553:-37.0898,0,-62.38	1/1:45:0,45:0:0:45:1581:-138.719,-13.5464,0	1/1:86:0,86:0:0:86:3075:-270.347,-25.8886,0	1/1:48:0,48:0:0:48:1716:-149.06,-14.4494,0	0/1:107:56,51:56:2000:51:1828:-127.745,0,-148.053	0/1:46:26,20:26:912:20:712:-47.7992,0,-68.5438	0/1:81:39,42:39:1380:42:1504:-106.77,0,-100.115	0/1:74:47,27:47:1664:27:968:-63.3323,0,-127.77	0/1:2:1,1:1:36:1:36:-2.90064,0,-2.99621	1/1:50:0,50:0:0:50:1792:-155.387,-15.0515,0	0/1:46:18,28:18:644:28:995:-74.0225,0,-44.4432	1/1:8:0,8:0:0:8:263:-23.2697,-2.40824,0	1/1:67:0,67:0:0:67:2382:-204.473,-20.169,0	0/1:27:15,12:15:540:12:432:-30.0516,0,-40.8064	1/1:5:0,5:0:0:5:180:-16.2662,-1.50515,0	0/1:16:13,3:13:464:3:104:-4.73234,0,-37.2792	0/1:71:27,43:27:950:43:1548:-112.687,0,-64.391	1/1:118:0,118:0:0:118:4184:-365.044,-35.5215,0	1/1:7:0,7:0:0:7:252:-22.4173,-2.10721,0	1/1:112:0,112:0:0:112:3992:-349.881,-33.7154,0	0/1:95:41,54:41:1459:54:1929:-140.081,0,-103.003	1/1:72:6,66:6:208:66:2364:-184.84,-2.61508,0	1/1:54:0,54:0:0:54:1904:-165.962,-16.2556,0	1/1:110:0,110:0:0:110:3911:-339.871,-33.1133,0	1/1:83:0,83:0:0:83:2941:-257.541,-24.9855,0	1/1:53:0,53:0:0:53:1900:-163.974,-15.9546,0	1/1:44:1,43:1:36:43:1544:-130.481,-9.64705,0	0/1:39:18,21:18:640:21:756:-55.4108,0,-46.1891	0/1:23:17,6:17:600:6:201:-11.0522,0,-47.3973	0/1:83:44,39:44:1522:39:1388:-94.9505,0,-112.285	1/1:45:0,45:0:0:45:1599:-139.53,-13.5464,0	1/1:232:0,232:0:0:232:8241:-703.778,-69.839,0	1/1:102:0,102:0:0:102:3644:-319.085,-30.7051,0	0/1:125:57,68:57:2027:68:2427:-172.713,0,-144.88	1/1:83:0,83:0:0:83:2954:-253.568,-24.9855,0	0/1:28:13,15:13:459:15:529:-37.2365,0,-33.2152	0/1:74:31,43:31:1091:43:1540:-111.123,0,-76.2133	0/1:99:18,81:18:644:81:2874:-219.648,0,-28.4786	1/1:118:1,117:1:36:117:4141:-353.41,-31.9259,0	1/1:32:0,32:0:0:32:1148:-100.633,-9.63296,0	1/1:70:0,70:0:0:70:2484:-215.699,-21.0721,0	0/1:43:23,20:23:819:20:699:-48.7108,0,-61.0802	0/1:106:55,51:55:1951:51:1828:-128.356,0,-143.954	1/1:22:0,22:0:0:22:788:-68.292,-6.62266,0	1/1:60:0,60:0:0:60:2144:-185.281,-18.0618,0	1/1:84:0,84:0:0:84:3011:-261.099,-25.2865,0	1/1:58:1,57:1:36:57:2018:-167.741,-13.8615,0	0/1:189:105,84:105:3739:84:2974:-199.532,0,-279.79	0/1:79:49,30:49:1760:30:1064:-68.2063,0,-134.895	1/1:119:0,119:0:0:119:4239:-369.392,-35.8226,0	1/1:59:0,59:0:0:59:2108:-183.396,-17.7608,0
chr04	30786278	.	GGGCA	AGGCA	99987	PASS	AB=0.506835;ABP=4.16796;AC=144;AF=0.765957;AN=188;AO=4996;CIGAR=1X4M;DP=6452;DPB=6457.8;DPRA=0;EPP=10851.7;EPPR=3058.27;GTI=0;LEN=1;MEANALT=1.40426;MQM=40.999;MQMR=59.6553;NS=94;NUMALT=1;ODDS=7.633;PAIRED=0;PAIREDR=0;PAO=14;PQA=489;PQR=212;PRO=9;QA=177633;QR=49618;RO=1407;RPL=4996;RPP=10851.7;RPPR=3058.27;RPR=0;RUN=1;SAF=0;SAP=10851.7;SAR=4996;SRF=0;SRP=3058.27;SRR=1407;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:15,13:15:531:13:460:-31.4136,0,-39.3309	1/1:42:0,41:0:0:41:1460:-127.284,-12.3422,0	1/1:150:0,150:0:0:150:5292:-459.453,-45.1545,0	1/1:120:0,118:0:0:118:4161:-363.162,-35.5215,0	0/1:13:4,9:4:144:9:324:-24.4134,0,-9.40023	0/1:20:10,10:10:341:10:354:-24.5932,0,-24.6482	0/1:62:32,30:32:1120:30:1076:-75.8936,0,-82.4408	1/1:84:0,83:0:0:83:2957:-256.953,-24.9855,0	1/1:79:0,78:0:0:78:2758:-239.817,-23.4803,0	1/1:51:0,51:0:0:51:1815:-159.088,-15.3525,0	0/1:74:34,38:34:1201:38:1350:-95.957,0,-86.3761	0/1:87:44,43:44:1562:43:1498:-103.915,0,-114.677	1/1:71:0,71:0:0:71:2521:-219.467,-21.3731,0	1/1:157:0,155:0:0:155:5515:-476.077,-46.6597,0	1/1:61:0,58:0:0:58:2052:-178.91,-17.4597,0	0/1:69:37,31:37:1315:31:1112:-75.6569,0,-97.8413	0/1:52:24,27:24:852:27:957:-68.107,0,-61.3268	1/1:28:0,28:0:0:28:996:-86.8747,-8.42884,0	0/1:21:10,10:10:358:10:356:-24.993,0,-26.1827	0/1:66:29,37:29:1027:37:1332:-97.0351,0,-72.8717	0/1:103:42,61:42:1496:61:2172:-156.528,0,-103.915	0/1:89:68,21:68:2412:21:752:-40.0363,0,-190.453	1/1:87:0,84:0:0:84:2994:-261.282,-25.2865,0	1/1:47:3,44:3:108:44:1568:-125.739,-4.07324,0	0/1:44:18,26:18:643:26:909:-64.9573,0,-44.8157	1/1:154:0,154:0:0:154:5482:-483.175,-46.3586,0	0/1:151:57,91:57:2009:91:3246:-235.212,0,-136.217	1/1:19:0,18:0:0:18:636:-54.9779,-5.41854,0	1/1:114:1,113:1:36:113:4036:-352.405,-30.7191,0	0/1:129:54,74:54:1909:74:2641:-189.54,0,-133.248	0/1:77:30,46:30:1066:46:1618:-118.023,0,-73.0282	0/1:5:3,2:3:106:2:72:-5.05838,0,-8.37925	0/1:14:12,2:12:414:2:72:-2.34911,0,-33.3519	1/1:4:0,4:0:0:4:144:-12.8786,-1.20412,0	0/1:13:9,4:9:319:4:144:-8.96518,0,-25.1346	1/1:6:0,6:0:0:6:216:-19.0585,-1.80618,0	1/1:155:0,154:0:0:154:5508:-485.553,-46.3586,0	0/1:94:41,52:41:1454:52:1864:-132.703,0,-102.807	1/1:51:0,50:0:0:50:1766:-153.791,-15.0515,0	1/1:2:0,2:0:0:2:72:-6.56353,-0.60206,0	1/1:70:2,68:2:72:68:2428:-203.22,-14.2354,0	0/1:35:19,16:19:675:16:560:-37.8228,0,-50.5417	0/1:94:42,52:42:1483:52:1852:-132.007,0,-105.356	0/1:40:24,16:24:839:16:568:-37.8687,0,-63.784	1/1:44:0,44:0:0:44:1580:-138.449,-13.2453,0	1/1:87:0,87:0:0:87:3112:-274.397,-26.1896,0	1/1:48:0,47:0:0:47:1680:-145.971,-14.1484,0	0/1:107:57,50:57:1970:50:1788:-124.368,0,-145.357	0/1:45:26,18:26:918:18:636:-41.9912,0,-69.3297	0/1:84:41,42:41:1440:42:1508:-107.172,0,-104.669	0/1:76:47,29:47:1664:29:1034:-68.5199,0,-127.169	0/1:4:3,1:3:106:1:36:-2.29858,0,-8.68498	1/1:50:0,50:0:0:50:1785:-155.36,-15.0515,0	0/1:44:18,26:18:624:26:909:-67.3069,0,-43.2385	1/1:9:0,9:0:0:9:321:-28.1029,-2.70927,0	1/1:69:0,69:0:0:69:2432:-210.312,-20.7711,0	0/1:28:16,12:16:568:12:432:-29.7506,0,-43.0206	1/1:5:0,5:0:0:5:180:-16.2662,-1.50515,0	0/1:16:12,3:12:424:3:104:-4.67824,0,-33.6204	0/1:71:27,44:27:966:44:1572:-114.979,0,-65.8796	1/1:121:1,119:1:36:119:4244:-367.624,-32.8717,0	1/1:7:0,7:0:0:7:252:-22.4173,-2.10721,0	1/1:112:0,112:0:0:112:3984:-351.682,-33.7154,0	0/1:99:43,56:43:1529:56:1992:-144.476,0,-108.096	1/1:75:6,68:6:201:68:2425:-191.219,-4.19351,0	1/1:52:0,52:0:0:52:1833:-160.136,-15.6536,0	1/1:109:0,109:0:0:109:3869:-337.792,-32.8123,0	1/1:82:0,82:0:0:82:2942:-257.555,-24.6845,0	1/1:52:0,52:0:0:52:1864:-161.201,-15.6536,0	1/1:44:1,43:1:36:43:1540:-130.567,-9.64705,0	0/1:39:17,21:17:598:21:752:-55.041,0,-42.3499	0/1:23:17,6:17:605:6:216:-12.3412,0,-47.8491	0/1:84:45,39:45:1573:39:1384:-95.0786,0,-116.573	1/1:46:0,46:0:0:46:1652:-143.981,-13.8474,0	1/1:228:0,228:0:0:228:8017:-691.079,-68.6348,0	1/1:100:2,98:2:72:98:3518:-301.185,-23.5977,0	0/1:128:58,70:58:2049:70:2458:-175.25,0,-145.709	1/1:81:1,80:1:27:80:2825:-242.608,-21.6836,0	0/1:28:13,15:13:457:15:526:-37.3103,0,-33.0352	0/1:76:34,41:34:1193:41:1464:-103.67,0,-84.7285	0/1:97:19,78:19:668:78:2744:-209.73,0,-31.0483	1/1:117:0,116:0:0:116:4086:-355.143,-34.9195,0	1/1:32:0,32:0:0:32:1146:-100.553,-9.63296,0	1/1:72:0,71:0:0:71:2520:-219.772,-21.3731,0	0/1:42:23,19:23:816:19:676:-46.9162,0,-61.1109	0/1:109:57,50:57:2025:50:1796:-125.012,0,-149.967	1/1:22:0,22:0:0:22:780:-68.0777,-6.62266,0	1/1:62:2,58:2:71:58:2066:-172.838,-11.6727,0	1/1:87:0,85:0:0:85:3040:-264.118,-25.5876,0	1/1:57:1,55:1:36:55:1928:-162.697,-13.6066,0	0/1:189:104,84:104:3631:84:3005:-202.266,0,-270.023	0/1:83:52,31:52:1823:31:1096:-70.8163,0,-139.355	1/1:117:0,116:0:0:116:4144:-361.886,-34.9195,0	1/1:60:0,58:0:0:58:2074:-181.365,-17.4597,0
chr04	30821660	.	C	T	76828.1	PASS	AB=0.482958;ABP=7.37708;AC=142;AF=0.755319;AN=188;AO=2992;CIGAR=1X;DP=3892;DPB=3892;DPRA=0;EPP=151.286;EPPR=7.27586;GTI=1;LEN=1;MEANALT=1.02128;MQM=40.4121;MQMR=59.9477;NS=94;NUMALT=1;ODDS=5.11133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106385;QR=32051;RO=898;RPL=1722;RPP=151.286;RPPR=7.27586;RPR=1270;RUN=1;SAF=0;SAP=6500.06;SAR=2992;SRF=0;SRP=1952.99;SRR=898;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:5,20:5:180:20:708:-54.4737,0,-9.02631	1/1:30:0,30:0:0:30:1064:-92.9033,-9.0309,0	1/1:52:0,52:0:0:52:1856:-160.4,-15.6536,0	1/1:90:0,90:0:0:90:3206:-276.498,-27.0927,0	0/1:16:10,6:10:360:6:216:-14.3273,0,-27.9278	0/1:14:7,7:7:248:7:244:-17.4128,0,-18.4498	0/1:48:18,30:18:636:30:1068:-78.2074,0,-43.1186	1/1:43:0,43:0:0:43:1532:-133.736,-12.9443,0	1/1:47:0,47:0:0:47:1664:-145.384,-14.1484,0	1/1:39:0,39:0:0:39:1396:-118.622,-11.7402,0	0/1:19:11,8:11:396:8:288:-19.4,0,-30.2632	0/1:60:31,29:31:1116:29:1027:-71.5092,0,-82.6899	1/1:43:0,43:0:0:43:1528:-133.205,-12.9443,0	1/1:26:0,26:0:0:26:928:-81.2785,-7.82678,0	1/1:28:0,28:0:0:28:1008:-87.4181,-8.42884,0	0/1:26:15,11:15:536:11:396:-25.9737,0,-40.748	0/1:8:5,3:5:180:3:108:-7.33771,0,-14.1438	1/1:12:0,12:0:0:12:424:-37.3453,-3.61236,0	0/1:15:8,7:8:288:7:244:-17.1536,0,-21.752	0/1:40:19,20:19:684:20:712:-48.0796,0,-49.7903	0/1:52:22,30:22:788:30:1064:-77.2744,0,-55.5866	0/1:34:25,9:25:883:9:324:-18.0309,0,-68.9191	1/1:45:0,45:0:0:45:1578:-137.001,-13.5464,0	1/1:14:0,14:0:0:14:500:-43.9235,-4.21442,0	0/1:34:21,13:21:748:13:460:-30.1497,0,-57.4103	1/1:122:0,122:0:0:122:4349:-375.989,-36.7257,0	0/1:144:62,82:62:2214:82:2916:-210.923,0,-156.175	1/1:18:0,18:0:0:18:640:-56.1337,-5.41854,0	1/1:193:0,193:0:0:193:6870:-593.269,-58.0988,0	0/1:59:38,21:38:1356:21:744:-46.8741,0,-104.58	0/1:78:33,45:33:1176:45:1596:-114.964,0,-82.6674	0/1:8:6,2:6:216:2:68:-3.88953,0,-17.3823	0/1:6:3,3:3:108:3:104:-7.62975,0,-8.26899	1/1:4:0,4:0:0:4:140:-12.5713,-1.20412,0	0/1:8:2,6:2:72:6:216:-16.7356,0,-4.42848	1/1:15:0,15:0:0:15:532:-46.7551,-4.51545,0	0/1:107:51,56:51:1815:56:2008:-141.548,0,-131.42	0/1:44:27,17:27:955:17:608:-39.4789,0,-73.0195	1/1:16:0,16:0:0:16:567:-49.6629,-4.81648,0	1/1:2:0,2:0:0:2:72:-6.61332,-0.60206,0	1/1:67:3,64:3:108:64:2288:-186.949,-10.0938,0	0/1:15:8,7:8:288:7:252:-17.8685,0,-21.752	0/1:62:32,30:32:1135:30:1041:-72.5734,0,-83.7942	0/1:17:12,5:12:428:5:180:-10.7973,0,-33.7413	1/1:22:0,22:0:0:22:761:-66.3509,-6.62266,0	1/1:47:1,46:1:36:46:1637:-138.049,-10.5501,0	0/1:21:2,19:2:68:19:669:-52.0094,0,-0.136078	0/1:68:32,36:32:1144:36:1272:-88.0029,0,-82.7995	0/1:86:55,31:55:1967:31:1116:-70.6559,0,-151.416	0/1:39:23,16:23:815:16:572:-38.1401,0,-61.9306	0/1:27:12,15:12:432:15:528:-37.9267,0,-31.0934	0/1:6:3,3:3:108:3:108:-7.80396,0,-8.26899	1/1:45:0,45:0:0:45:1593:-137.154,-13.5464,0	0/1:28:11,17:11:396:17:601:-43.9793,0,-27.5539	1/1:8:0,8:0:0:8:288:-25.4091,-2.40824,0	1/1:83:0,83:0:0:83:2964:-257.996,-24.9855,0	0/1:23:10,13:10:360:13:464:-30.6061,0,-25.8206	1/1:2:0,2:0:0:2:72:-6.49999,-0.60206,0	0/1:14:4,10:4:144:10:356:-26.8709,0,-9.0992	0/1:23:14,9:14:504:9:324:-21.4684,0,-38.7744	1/1:108:0,108:0:0:108:3848:-333.014,-32.5112,0	1/1:4:0,4:0:0:4:136:-12.2284,-1.20412,0	1/1:102:0,101:0:0:101:3608:-309.179,-30.404,0	0/1:64:30,34:30:1063:34:1199:-84.9294,0,-76.7149	1/1:24:0,24:0:0:24:852:-74.65,-7.22472,0	1/1:46:0,46:0:0:46:1640:-141.946,-13.8474,0	1/1:60:0,60:0:0:60:2117:-180.556,-18.0618,0	1/1:63:0,63:0:0:63:2252:-195.102,-18.9649,0	1/1:7:0,7:0:0:7:252:-22.2764,-2.10721,0	1/1:27:0,27:0:0:27:947:-82.9298,-8.12781,0	0/1:27:14,13:14:500:13:468:-27.9444,0,-37.2084	0/1:10:3,7:3:108:7:248:-18.889,0,-7.06487	0/1:62:35,27:35:1248:27:941:-61.6661,0,-93.961	1/1:38:0,38:0:0:38:1352:-118.063,-11.4391,0	1/1:41:0,41:0:0:41:1456:-127.245,-12.3422,0	1/1:47:0,47:0:0:47:1672:-144.932,-14.1484,0	0/1:28:17,11:17:608:11:388:-25.7742,0,-46.6232	1/1:35:0,35:0:0:35:1260:-109.33,-10.5361,0	0/1:8:7,1:7:252:1:36:-1.07246,0,-20.6207	0/1:43:26,17:26:924:17:612:-39.74,0,-70.53	0/1:36:20,16:20:716:16:568:-38.7978,0,-53.9306	1/1:163:0,163:0:0:163:5814:-501.645,-49.0679,0	1/1:35:0,35:0:0:35:1245:-107.959,-10.5361,0	1/1:26:0,26:0:0:26:932:-80.8886,-7.82678,0	0/1:21:9,12:9:324:12:432:-31.2954,0,-23.1842	0/1:80:44,36:44:1561:36:1292:-87.9296,0,-116.697	1/1:14:0,14:0:0:14:500:-43.8191,-4.21442,0	1/1:39:0,39:0:0:39:1384:-118.174,-11.7402,0	1/1:36:0,36:0:0:36:1274:-111.259,-10.8371,0	1/1:13:0,13:0:0:13:462:-40.6355,-3.91339,0	0/1:48:29,19:29:1044:19:648:-42.4099,0,-79.8254	0/1:30:23,7:23:815:7:244:-12.4459,0,-64.6399	1/1:60:0,60:0:0:60:2144:-185.676,-18.0618,0	1/1:60:0,60:0:0:60:2103:-182.392,-18.0618,0
chr04	30935146	.	G	A	23631.4	PASS	AB=0.501961;ABP=3.10397;AC=50;AF=0.268817;AN=186;AO=1415;CIGAR=1X;DP=5535;DPB=5535;DPRA=0.962844;EPP=3066.96;EPPR=8895.24;GTI=3;LEN=1;MEANALT=1.02041;MQM=59.9767;MQMR=60;NS=93;NUMALT=1;ODDS=0.193346;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50555;QR=146823;RO=4115;RPL=1414;RPP=3066.96;RPPR=8895.24;RPR=1;RUN=1;SAF=0;SAP=3075.64;SAR=1415;SRF=0;SRP=8938.62;SRR=4115;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:7,3:7:244:3:108:-7.06487,0,-19.2891	0/0:54:52,2:52:1859:2:72:0,-9.4189,-160.752	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:99:99,0:99:3535:0:0:0,-29.802,-318.359	0/1:40:21,19:21:752:19:675:-49.0358,0,-55.9651	0/1:34:16,18:16:572:18:648:-48.4169,0,-41.5784	0/1:71:25,46:25:888:46:1647:-127.145,0,-58.8659	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/1:43:17,26:17:608:26:932:-71.2546,0,-42.1077	0/1:67:40,27:40:1428:27:968:-67.2684,0,-108.649	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:55:27,28:27:972:28:999:-73.6679,0,-71.2413	0/1:75:30,45:30:1071:45:1607:-122.342,0,-74.1244	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.849	0/1:36:20,16:20:711:16:576:-41.3379,0,-53.4786	0/1:66:32,34:32:1140:34:1220:-90.2388,0,-83.0412	0/1:46:29,17:29:1036:17:608:-41.2046,0,-79.7065	0/1:65:19,46:19:669:46:1656:-129.761,0,-40.967	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:67:59,8:59:2112:8:288:-6.0984,0,-170.18	0/1:24:11,13:11:392:13:468:-35.2349,0,-28.3953	0/0:171:171,0:171:6034:0:0:0,-51.4761,-543.166	0/1:90:41,49:41:1451:49:1752:-130.871,0,-103.792	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/1:133:59,74:59:2093:74:2641:-197.899,0,-148.601	0/1:101:50,51:50:1788:51:1804:-132.235,0,-130.799	0/1:15:11,4:11:384:4:144:-8.79817,0,-30.3792	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:21:-2.09995,-0.30103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:171:83,88:83:2964:88:3138:-231.112,0,-215.518	0/1:124:55,69:55:1948:69:2459:-184.236,0,-138.266	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:67:67,0:67:2376:0:0:0,-20.169,-214.096	0/1:49:31,18:31:1096:18:648:-43.9014,0,-84.1995	0/1:86:42,44:42:1508:44:1571:-115.792,0,-110.126	0/1:65:34,31:34:1202:31:1108:-80.464,0,-88.9173	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.684	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/1:70:35,35:35:1260:35:1260:-92.6334,0,-92.6334	0/1:51:32,19:32:1139:19:680:-46.1766,0,-87.4659	0/1:92:44,48:44:1584:48:1728:-128.111,0,-115.157	0/1:121:62,59:62:2207:59:2074:-150.503,0,-162.47	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:4,7:4:140:7:248:-19.3529,0,-9.63325	0/1:35:18,17:18:644:17:608:-44.516,0,-47.7545	0/0:92:92,0:92:3278:0:0:0,-27.6948,-295.24	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:112:111,0:111:3959:0:0:0,-33.4143,-356.142	0/1:126:66,60:66:2360:60:2155:-156.287,0,-174.729	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:39:38,0:38:1326:0:0:0,-11.4391,-119.315	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.581	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:33:33,0:33:1166:0:0:0,-9.93399,-105.246	0/1:99:45,53:45:1612:53:1891:-140.607,0,-115.509	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	0/1:95:50,45:50:1792:45:1616:-117.132,0,-132.965	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	0/0:93:92,0:92:3308:0:0:0,-27.6948,-297.726	0/0:93:92,0:92:3288:0:0:0,-27.6948,-295.928	0/1:66:26,40:26:932:40:1432:-109.31,0,-64.3309	0/0:67:67,0:67:2372:0:0:0,-20.169,-213.736	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:86:43,43:43:1540:43:1532:-112.284,0,-113.004	0/1:45:29,16:29:1025:16:563:-37.4528,0,-79.0143	0/0:102:102,0:102:3631:0:0:0,-30.7051,-326.996	0/0:91:91,0:91:3248:0:0:0,-27.3937,-292.542	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:67:36,31:36:1288:31:1116:-80.5827,0,-96.0546	0/1:117:65,52:65:2328:52:1859:-132.368,0,-174.559	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/1:86:47,39:47:1674:39:1388:-99.3298,0,-125.057	0/1:47:12,35:12:428:35:1243:-98.0255,0,-24.7104	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709
chr04	30935317	.	C	T	70817.2	PASS	AB=0.369001;ABP=422.305;AC=131;AF=0.704301;AN=186;AO=3486;CIGAR=1X;DP=6429;DPB=6429;DPRA=1.18569;EPP=7572.76;EPPR=6389.31;GTI=10;LEN=1;MEANALT=1.02198;MQM=59.8841;MQMR=59.9813;NS=93;NUMALT=1;ODDS=0.429836;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124972;QR=105006;RO=2941;RPL=3486;RPP=7572.76;RPPR=6389.31;RPR=0;RUN=1;SAF=0;SAP=7572.76;SAR=3486;SRF=0;SRP=6389.31;SRR=2941;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	1/1:55:0,55:0:0:55:1975:-177.996,-16.5567,0	1/1:42:0,42:0:0:42:1508:-135.879,-12.6433,0	1/1:31:1,30:1:36:30:1072:-93.1942,-5.73366,0	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/1:30:21,9:21:740:9:324:-20.475,0,-57.8925	0/1:52:32,20:32:1144:20:716:-49.1132,0,-87.616	1/1:58:0,58:0:0:58:2065:-186.119,-17.4597,0	1/1:37:0,37:0:0:37:1328:-119.813,-11.1381,0	1/1:58:0,58:0:0:58:2084:-187.825,-17.4597,0	0/1:282:244,38:244:8709:38:1368:-37.7522,0,-698.884	0/1:72:28,44:28:1000:44:1579:-120.719,0,-68.6412	1/1:87:0,87:0:0:87:3128:-281.729,-26.1896,0	1/1:104:0,104:0:0:104:3732:-335.987,-31.3071,0	1/1:83:0,83:0:0:83:2968:-267.353,-24.9855,0	0/1:63:31,32:31:1108:32:1122:-82.3177,0,-81.0661	0/1:126:52,74:52:1872:74:2645:-200.357,0,-130.829	1/1:102:1,101:1:36:101:3635:-323.755,-27.1068,0	0/1:159:132,27:132:4736:27:953:-38.2196,0,-378.53	0/1:34:21,13:21:752:13:468:-32.2246,0,-57.7712	0/1:43:17,26:17:597:26:936:-71.6152,0,-41.1118	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:19:1,18:1:36:18:648:-55.0536,-2.1213,0	1/1:28:2,26:2:72:26:932:-77.3621,-1.59212,0	0/1:23:11,12:11:392:12:432:-32.2975,0,-28.6964	1/1:88:0,88:0:0:88:3144:-283.168,-26.4906,0	0/1:65:41,24:41:1446:24:860:-58.1549,0,-110.865	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:31:18,13:18:644:13:468:-33.1277,0,-48.9587	0/1:39:23,16:23:824:16:576:-40.4348,0,-62.7431	0/0:131:130,1:130:4626:1:36:0,-35.8367,-412.904	0/0:109:109,0:109:3889:0:0:0,-32.8123,-350.204	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:227:225,2:225:8006:2:72:0,-61.4971,-713.728	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:160:64,96:64:2296:96:3448:-262.367,0,-158.736	0/1:35:20,15:20:720:15:536:-38.0388,0,-54.5881	1/1:81:0,80:0:0:80:2880:-259.073,-24.0824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:44:0,44:0:0:44:1576:-142.13,-13.2453,0	0/1:130:109,21:109:3908:21:756:-29.2205,0,-312.779	0/1:30:13,17:13:449:17:608:-46.0211,0,-31.7066	0/1:75:35,40:35:1260:40:1436:-106.96,0,-91.1282	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	1/1:29:0,29:0:0:29:1040:-93.8582,-8.72987,0	1/1:43:0,43:0:0:43:1544:-138.232,-12.9443,0	0/1:36:19,17:19:680:17:608:-44.2134,0,-50.6921	0/1:29:18,11:18:644:11:392:-26.8902,0,-49.5607	0/1:62:36,26:36:1269:26:936:-65.7847,0,-95.8469	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:290:287,3:287:10277:3:108:0,-77.2235,-914.778	1/1:41:0,41:0:0:41:1472:-132.774,-12.3422,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:27:1,26:1:36:26:928:-80.2367,-4.52954,0	0/1:11:2,9:2:68:9:324:-26.1922,0,-3.14638	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:100:99,1:99:3556:1:36:0,-26.5047,-316.649	0/1:33:14,19:14:504:19:676:-51.2322,0,-35.7641	1/1:103:0,103:0:0:103:3700:-333.17,-31.0061,0	.:.:.:.:.:.:.:.	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:89:46,43:46:1648:43:1548:-112.821,0,-121.817	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:56:1,55:1:36:55:1976:-174.506,-13.2594,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:42:1,41:1:36:41:1472:-129.178,-9.04499,0	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	0/1:82:35,47:35:1252:47:1688:-127.522,0,-88.3006	0/0:152:149,3:149:5300:3:108:0,-35.6814,-466.977	0/1:17:4,13:4:136:13:464:-36.98,0,-7.45803	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:38:22,16:22:777:16:576:-40.7343,0,-58.8112	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/0:150:149,1:149:5301:1:36:0,-41.5562,-473.628	0/1:64:33,31:33:1188:31:1108:-80.7651,0,-87.9627	0/1:34:14,20:14:504:20:712:-54.1716,0,-35.4631	1/1:59:0,59:0:0:59:2120:-191.066,-17.7608,0	1/1:113:0,113:0:0:113:4063:-365.851,-34.0164,0	1/1:83:0,83:0:0:83:2964:-266.984,-24.9855,0	0/1:117:56,61:56:1985:61:2173:-160.6,0,-143.702	0/1:145:63,82:63:2240:82:2939:-221.092,0,-158.215	1/1:53:1,52:1:36:52:1872:-165.161,-12.3563,0	1/1:94:0,94:0:0:94:3377:-304.116,-28.2968,0	1/1:78:0,78:0:0:78:2800:-252.231,-23.4803,0	1/1:57:1,56:1:36:56:2008:-177.389,-13.5604,0	0/1:465:416,49:416:14893:49:1739:-16.8129,0,-1200.12	0/1:85:51,34:51:1809:34:1220:-84.5193,0,-137.502	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:140:0,139:0:0:139:4981:-448.076,-41.8432,0
chr04	30935353	.	ATCA	CTCT,CTCA	205229	PASS	AB=0.498103,0.497155;ABP=3.14209,3.30683;AC=142,46;AF=0.755319,0.244681;AN=188;AO=7397,2122;CIGAR=1X2M1X,1X3M;DP=9563;DPB=9564;DPRA=0,1.01734;EPP=15874.9,4602.19;EPPR=0;GTI=1;LEN=4,1;MEANALT=2,2.38596;MQM=59.934,59.9698;MQMR=0;NS=94;NUMALT=2;ODDS=1.59367;PAIRED=0,0;PAIREDR=0;PAO=2.5,1.5;PQA=86,54;PQR=0;PRO=0;QA=261489,75910;QR=0;RO=0;RPL=7376,2120;RPP=15883.5,4593.52;RPPR=0;RPR=21,2;RUN=1,1;SAF=7396,2121;SAP=16056.7,4602.19;SAR=1,1;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:67:0,43,24:0:0:43,24:1530,860:-195.189,-70.4971,-57.5528,-125.049,0,-117.824	1/1:97:0,97,0:0:0:97,0:3446,0:-310.355,-29.1999,0,-310.355,-29.1999,-310.355	1/1:155:0,155,0:0:0:155,0:5455,0:-491.083,-46.6597,0,-491.083,-46.6597,-491.083	1/1:191:0,190,0:0:0:190,0:6715,0:-604.011,-57.1957,0,-604.011,-57.1957,-604.011	1/2:50:0,27,23:0:0:27,23:956,828:-145.791,-67.9204,-59.7926,-78.2275,0,-71.3039	1/2:26:0,10,16:0:0:10,16:359,576:-76.6426,-47.3585,-44.3482,-29.6433,0,-24.8268	1/2:65:0,27,36:0:0:27,36:968,1292:-184.338,-105.387,-97.2591,-78.9501,0,-68.113	1/1:128:0,127,1:0:0:127,1:4462,36:-401.395,-38.2308,0,-398.458,-34.9336,-398.157	1/1:156:0,154,0:0:0:154,0:5413,0:-487.036,-46.3586,0,-487.036,-46.3586,-487.036	1/1:68:0,68,0:0:0:68,0:2377,0:-214.188,-20.47,0,-214.188,-20.47,-214.188	1/2:67:0,39,28:0:0:39,28:1378,1008:-194.828,-82.6075,-70.8673,-112.577,0,-104.148	1/2:168:0,82,86:0:0:82,86:2887,3057:-484.5,-249.471,-224.787,-235.382,0,-209.493	1/1:115:0,115,0:0:0:115,0:4073,0:-366.671,-34.6185,0,-366.671,-34.6185,-366.671	1/1:72:0,72,0:0:0:72,0:2573,0:-231.815,-21.6742,0,-231.815,-21.6742,-231.815	1/1:148:0,148,0:0:0:148,0:5242,0:-471.913,-44.5524,0,-471.913,-44.5524,-471.913	1/2:80:0,48,31:0:0:48,31:1694,1103:-227.829,-89.8882,-75.4387,-137.935,0,-128.604	1/2:36:0,18,18:0:0:18,18:647,648:-106.017,-53.2333,-47.8148,-53.1431,0,-47.7246	1/1:53:0,52,0:0:0:52,0:1851,0:-166.52,-15.6536,0,-166.52,-15.6536,-166.52	1/2:65:0,34,28:0:0:34,28:1222,1004:-181.58,-81.8873,-71.6523,-99.6922,0,-91.2634	1/2:150:0,70,80:0:0:70,80:2483,2861:-435.939,-233.645,-212.573,-202.65,0,-178.568	1/2:176:0,78,98:0:0:78,98:2761,3507:-511.235,-286.339,-262.859,-225.251,0,-195.75	1/2:102:0,44,57:0:0:44,57:1532,2048:-291.645,-167.073,-153.828,-124.565,0,-107.406	1/1:158:0,156,0:0:0:156,0:5496,0:-494.429,-46.9607,0,-494.429,-46.9607,-494.429	1/1:120:0,114,6:0:0:114,6:3993,216:-359.2,-34.3174,0,-341.575,-16.3331,-339.768	1/2:124:0,55,69:0:0:55,69:1948,2472:-360.324,-201.642,-185.086,-158.717,0,-137.946	1/1:219:0,219,0:0:0:219,0:7750,0:-697.541,-65.9256,0,-697.541,-65.9256,-697.541	1/2:346:0,175,169:0:0:175,169:6233,6040:-1000.53,-492.498,-439.818,-508.058,0,-457.184	1/1:42:0,42,0:0:0:42,0:1495,0:-134.844,-12.6433,0,-134.844,-12.6433,-134.844	1/1:188:0,181,2:0:0:181,2:6428,72:-578.271,-54.4864,0,-572.396,-48.603,-571.794	1/2:120:0,51,69:0:0:51,69:1804,2476:-349.255,-202.322,-186.97,-147.288,0,-126.517	1/2:134:0,65,68:0:0:65,68:2276,2415:-382.055,-196.872,-177.305,-185.283,0,-164.813	1/2:15:0,4,11:0:0:4,11:144,392:-44.0594,-32.3087,-31.1046,-12.1095,0,-8.79817	1/2:11:0,1,10:0:0:1,10:36,360:-32.6714,-29.734,-29.433,-3.29724,0,-0.286945	1/1:8:0,8,0:0:0:8,0:285,0:-25.9946,-2.40824,0,-25.9946,-2.40824,-25.9946	1/2:11:0,6,5:0:0:6,5:215,180:-32.5808,-15.0469,-13.2407,-17.893,0,-16.3878	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/2:184:0,112,72:0:0:112,72:3970,2576:-533.836,-210.415,-176.7,-323.777,0,-302.103	1/2:98:0,43,54:0:0:43,54:1530,1928:-281.873,-157.181,-144.237,-124.688,0,-108.433	1/1:75:0,75,0:0:0:75,0:2644,0:-238.206,-22.5773,0,-238.206,-22.5773,-238.206	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:73:0,71,2:0:0:71,2:2506,72:-225.432,-21.3731,0,-219.557,-15.1385,-218.955	1/2:34:0,27,7:0:0:27,7:960,252:-99.1514,-20.9217,-12.7939,-78.5886,0,-76.4813	1/2:161:0,85,74:0:0:85,74:2963,2656:-457.611,-216.65,-191.062,-240.956,0,-218.679	1/2:70:0,41,29:0:0:41,29:1454,1040:-203.629,-85.1845,-72.8423,-118.801,0,-110.071	1/1:88:0,84,0:0:0:84,0:2962,0:-266.484,-25.2865,0,-266.484,-25.2865,-266.484	1/1:114:0,113,0:0:0:113,0:3988,0:-358.841,-34.0164,0,-358.841,-34.0164,-358.841	1/1:110:0,107,0:0:0:107,0:3768,0:-338.913,-32.2102,0,-338.913,-32.2102,-338.913	1/2:169:0,108,61:0:0:108,61:3830,2188:-490.809,-178.778,-146.267,-312.389,0,-294.026	1/2:80:0,34,45:0:0:34,45:1197,1608:-228.548,-131.104,-120.869,-97.4384,0,-83.892	1/2:133:0,64,69:0:0:64,69:2252,2468:-384.92,-201.603,-182.337,-183.671,0,-162.9	1/2:71:0,26,45:0:0:26,45:927,1612:-207.388,-131.824,-123.997,-75.9217,0,-62.3754	1/2:18:0,11,7:0:0:11,7:390,252:-52.6912,-20.9217,-17.6104,-32.1271,0,-30.0199	1/1:157:0,157,0:0:0:157,0:5567,0:-501.158,-47.2617,0,-501.158,-47.2617,-501.158	1/2:68:0,37,29:0:0:37,29:1278,1034:-188.082,-84.3595,-73.2214,-103.788,0,-95.0584	1/2:11:0,8,3:0:0:8,3:281,104:-31.6739,-8.79971,-6.39147,-23.2219,0,-22.3188	1/1:136:0,136,0:0:0:136,0:4780,0:-430.348,-40.9401,0,-430.348,-40.9401,-430.348	1/2:38:0,9,28:0:0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chr04	30935491	.	G	A	69008	PASS	AB=0.531728;ABP=61.8485;AC=47;AF=0.25;AN=188;AO=3609;CIGAR=1X;DP=14634;DPB=14634;DPRA=1.13842;EPP=7839.85;EPPR=23930.5;GTI=2;LEN=1;MEANALT=1.09677;MQM=44.6046;MQMR=59.9472;NS=94;NUMALT=1;ODDS=0.381785;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128259;QR=389471;RO=11019;RPL=1915;RPP=32.3971;RPPR=175.29;RPR=1694;RUN=1;SAF=1915;SAP=32.3971;SAR=1694;SRF=5042;SRP=175.29;SRR=5977;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:31,16:31:1070:16:572:-33.8966,0,-82.455	0/0:146:146,0:146:5140:0:0:0,-43.9504,-462.747	0/0:241:240,1:240:8439:1:36:0,-68.95,-755.923	0/0:400:400,0:400:14189:0:0:0,-120.412,-1276.77	0/1:36:13,23:13:468:23:824:-58.5305,0,-31.6226	0/1:37:22,15:22:780:15:536:-32.0926,0,-59.3849	0/1:182:102,80:102:3575:80:2858:-185.235,0,-267.171	0/0:212:212,0:212:7489:0:0:0,-63.8184,-674.06	0/0:153:150,3:150:5333:3:108:0,-36.9527,-471.001	0/0:177:177,0:177:6309:0:0:0,-53.2823,-567.904	0/1:120:53,67:53:1891:67:2399:-167.337,0,-134.344	0/1:166:95,71:95:3383:71:2518:-156.585,0,-254.715	0/0:150:150,0:150:5316:0:0:0,-45.1545,-478.581	0/0:140:140,0:140:4931:0:0:0,-42.1442,-443.947	0/0:130:130,0:130:4563:0:0:0,-39.1339,-410.84	0/1:140:76,64:76:2686:64:2253:-128.748,0,-199.841	0/1:107:51,56:51:1815:56:2003:-116.895,0,-131.42	0/0:136:136,0:136:4835:0:0:0,-40.9401,-435.308	0/1:92:43,49:43:1540:49:1744:-112.971,0,-111.198	0/1:368:212,156:212:7532:156:5567:-332.009,0,-565.892	0/1:259:126,133:126:4395:133:4727:-282.194,0,-317.739	0/1:219:48,170:48:1707:170:6045:-410.729,0,-87.938	0/0:107:106,1:106:3769:1:36:0,-29.474,-336.674	0/1:100:86,14:86:3063:14:495:-3.11712,0,-245.796	0/1:131:60,71:60:2120:71:2523:-152.283,0,-151.632	0/0:415:413,1:413:14633:1:36:0,-121.388,-1311.68	0/1:396:174,222:174:6114:222:7893:-502.546,0,-431.156	0/0:71:71,0:71:2520:0:0:0,-21.3731,-226.197	0/0:487:486,1:486:17343:1:36:0,-143.003,-1556.9	0/1:126:57,69:57:1999:69:2459:-164.967,0,-142.251	0/1:155:66,89:66:2317:89:3154:-200.418,0,-162.128	0/1:9:8,1:8:280:1:36:-0.889005,0,-22.83	0/1:13:8,5:8:288:5:180:-11.5978,0,-22.354	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:15:7,8:7:252:8:288:-20.8034,0,-18.5135	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:303:153,149:153:5382:149:5231:-328.694,0,-393.243	0/1:213:94,119:94:3341:119:4256:-237.514,0,-236.788	0/0:125:124,1:124:4402:1:36:0,-34.0305,-391.902	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:252:249,3:249:8822:3:108:0,-66.8403,-784.943	0/1:78:43,35:43:1522:35:1251:-75.1125,0,-113.787	0/1:178:85,93:85:2953:93:3315:-211.141,0,-212.419	0/1:103:39,64:39:1380:64:2275:-146.239,0,-93.4927	0/0:130:130,0:130:4576:0:0:0,-39.1339,-412.009	0/0:104:103,1:103:3606:1:36:0,-27.7088,-321.149	0/0:139:137,1:137:4849:1:36:0,-38.3037,-432.967	0/1:253:123,130:123:4364:130:4635:-299.636,0,-316.775	0/1:186:75,110:75:2610:110:3882:-259.155,0,-179.095	0/1:258:112,145:112:3995:145:5182:-346.134,0,-282.174	0/1:203:99,104:99:3508:104:3661:-230.805,0,-254.822	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:205:205,0:205:7234:0:0:0,-61.7111,-649.992	0/1:100:40,60:40:1419:60:2131:-155.569,0,-97.9036	0/1:9:6,3:6:216:3:108:-4.45511,0,-17.0812	0/0:186:186,0:186:6530:0:0:0,-55.9916,-587.788	0/1:53:24,29:24:821:29:1024:-60.4669,0,-58.2481	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:21:13,8:13:460:8:288:-19.1591,0,-35.4137	0/1:140:71,69:71:2547:69:2452:-164.362,0,-187.335	0/0:193:193,0:193:6728:0:0:0,-58.0988,-605.607	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:264:264,0:264:9374:0:0:0,-79.4719,-842.649	0/1:224:102,122:102:3604:122:4343:-276.375,0,-257.134	0/0:128:122,6:122:4317:6:212:0,-20.2297,-370.389	0/0:147:147,0:147:5190:0:0:0,-44.2514,-466.617	0/0:292:287,5:287:10139:5:180:0,-74.5211,-898.91	0/0:130:130,0:130:4584:0:0:0,-39.1339,-412.727	0/0:106:106,0:106:3730:0:0:0,-31.9092,-335.903	0/0:139:139,0:139:4877:0:0:0,-41.8432,-439.017	0/1:109:61,48:61:2161:48:1703:-105.632,0,-161.943	0/1:44:14,30:14:500:30:1045:-79.8417,0,-32.0909	0/1:145:62,83:62:2212:83:2951:-202.752,0,-155.696	0/0:173:172,1:172:6124:1:32:0,-48.8789,-548.062	0/0:195:195,0:195:6848:0:0:0,-58.7008,-616.388	0/0:305:302,3:302:10594:3:108:0,-81.739,-943.311	0/1:152:52,100:52:1851:100:3557:-232.384,0,-121.113	0/0:243:243,0:243:8587:0:0:0,-73.1503,-772.834	0/1:9:1,8:1:36:8:284:-16.867,0,-0.889005	0/1:187:81,106:81:2869:106:3765:-227.269,0,-202.154	0/1:260:107,153:107:3802:153:5450:-337.274,0,-264.111	0/0:290:288,2:288:10138:2:68:0,-82.1774,-907.24	0/0:132:132,0:132:4658:0:0:0,-39.736,-418.759	0/0:170:170,0:170:6034:0:0:0,-51.1751,-543.167	0/1:176:86,90:86:3027:90:3193:-190.184,0,-219.68	0/1:254:115,139:115:4056:139:4914:-299.119,0,-288.769	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:129:128,1:128:4536:1:36:0,-35.2346,-404.782	0/0:138:138,0:138:4897:0:0:0,-41.5421,-440.885	0/0:127:127,0:127:4524:0:0:0,-38.2308,-407.33	0/1:195:109,86:109:3815:86:3066:-194.901,0,-284.846	0/1:150:40,110:40:1398:110:3903:-263.917,0,-80.9611	0/0:210:210,0:210:7424:0:0:0,-63.2163,-668.208	0/0:212:212,0:212:7432:0:0:0,-63.8184,-668.927
chr04	30979528	.	T	C	101673	PASS	AB=0.503319;ABP=3.26972;AC=139;AF=0.747312;AN=186;AO=4866;CIGAR=1X;DP=6228;DPB=6228;DPRA=0;EPP=10552;EPPR=2927.99;GTI=2;LEN=1;MEANALT=1.07527;MQM=59.9965;MQMR=59.9845;NS=93;NUMALT=1;ODDS=1.7431;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171517;QR=48275;RO=1351;RPL=0;RPP=10569.4;RPPR=2927.99;RPR=4866;RUN=1;SAF=2;SAP=10552;SAR=4864;SRF=0;SRP=2936.67;SRR=1351;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:15,6:15:536:6:201:-12.0954,0,-42.2532	1/1:32:0,32:0:0:32:1118:-100.923,-9.63296,0	1/1:85:0,85:0:0:85:3010:-271.132,-25.5876,0	1/1:217:0,217:0:0:217:7690:-692.139,-65.3235,0	0/1:28:7,21:7:252:21:744:-58.8555,0,-14.6001	0/1:25:10,15:10:360:15:519:-39.511,0,-25.2186	0/1:73:31,42:31:1100:42:1499:-113.229,0,-77.3351	1/1:53:0,53:0:0:53:1830:-164.974,-15.9546,0	1/1:66:0,65:0:0:65:2307:-207.531,-19.567,0	1/1:69:0,69:0:0:69:2425:-218.505,-20.7711,0	0/1:29:16,13:16:576:13:464:-33.3676,0,-43.4451	0/1:66:36,30:36:1288:30:1043:-74.3081,0,-96.3556	1/1:53:0,53:0:0:53:1821:-164.166,-15.9546,0	1/1:29:0,29:0:0:29:981:-88.5931,-8.72987,0	1/1:57:0,57:0:0:57:2002:-180.452,-17.1587,0	0/1:34:18,16:18:639:16:572:-41.5784,0,-47.6032	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:33:0,32:0:0:32:1111:-99.9368,-9.63296,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:306:156,150:156:5591:150:5331:-387.809,0,-411.196	0/1:139:69,70:69:2468:70:2480:-181.61,0,-180.531	0/1:47:23,24:23:820:24:821:-60.0541,0,-59.9741	1/1:43:1,41:1:36:41:1442:-126.476,-9.40481,0	1/1:37:2,35:2:72:35:1244:-105.428,-4.30139,0	0/1:39:17,22:17:608:22:784:-59.1437,0,-43.3119	1/1:179:0,178:0:0:178:6309:-567.546,-53.5833,0	0/1:170:74,96:74:2648:96:3377:-252.971,0,-187.391	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:213:0,213:0:0:213:7551:-679.637,-64.1194,0	0/1:72:41,31:41:1468:31:1075:-75.3813,0,-110.742	0/1:83:45,38:45:1603:38:1349:-96.7228,0,-119.574	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:136:68,68:68:2444:68:2347:-170.549,0,-179.275	0/1:95:45,50:45:1611:50:1766:-130.624,0,-116.681	1/1:25:0,25:0:0:25:843:-76.1756,-7.52575,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:201:2,198:2:72:198:7008:-623.953,-53.7291,0	0/1:22:12,10:12:432:10:348:-25.0325,0,-32.5985	0/1:79:38,41:38:1352:41:1440:-106.112,0,-98.0413	0/1:36:20,16:20:708:16:564:-40.2532,0,-53.2085	1/1:35:0,35:0:0:35:1203:-108.566,-10.5361,0	1/1:82:0,82:0:0:82:2891:-260.426,-24.6845,0	1/1:51:0,51:0:0:51:1811:-163.271,-15.3525,0	0/1:103:54,49:54:1935:49:1737:-125.606,0,-143.42	0/1:73:42,31:42:1482:31:1080:-75.5306,0,-111.698	0/1:77:37,40:37:1316:40:1423:-105.187,0,-95.5625	0/1:51:27,24:27:972:24:856:-62.0086,0,-72.4454	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:92:0,92:0:0:92:3229:-290.835,-27.6948,0	0/1:54:30,24:30:1076:24:856:-61.1055,0,-80.8972	0/1:12:9,3:9:316:3:108:-6.46281,0,-25.1665	1/1:130:0,130:0:0:130:4572:-411.646,-39.1339,0	0/1:31:20,11:20:708:11:396:-26.6508,0,-54.7137	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:43:17,26:17:600:26:924:-70.5334,0,-41.3849	1/1:66:0,66:0:0:66:2271:-204.65,-19.868,0	.:.:.:.:.:.:.:.	1/1:237:0,237:0:0:237:8379:-754.124,-71.3441,0	0/1:128:48,75:48:1720:75:2637:-200.196,0,-117.706	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	1/1:64:0,64:0:0:64:2294:-206.721,-19.2659,0	1/1:92:0,92:0:0:92:3263:-293.892,-27.6948,0	1/1:98:1,97:1:36:97:3437:-305.946,-25.9027,0	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	0/1:39:30,9:30:1072:9:311:-16.5836,0,-85.0523	0/1:15:4,11:4:144:11:368:-28.9257,0,-8.79817	0/1:106:58,48:58:2068:48:1696:-121.017,0,-154.482	1/1:97:0,97:0:0:97:3427:-308.644,-29.1999,0	1/1:49:0,49:0:0:49:1731:-156.074,-14.7505,0	1/1:200:0,199:0:0:199:7039:-633.216,-59.905,0	0/1:47:13,34:13:468:34:1194:-93.6153,0,-28.3112	1/1:91:1,90:1:36:90:3143:-279.497,-23.7955,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:78:40,38:40:1432:38:1335:-96.966,0,-105.697	0/1:75:30,45:30:1072:45:1607:-122.342,0,-74.2152	1/1:155:1,154:1:36:154:5441:-486.223,-43.0614,0	1/1:44:0,44:0:0:44:1535:-138.441,-13.2453,0	1/1:45:0,45:0:0:45:1578:-142.309,-13.5464,0	0/1:21:8,13:8:284:13:456:-35.0516,0,-19.5817	0/1:83:36,47:36:1283:47:1626:-121.64,0,-90.7871	1/1:19:0,19:0:0:19:668:-60.4457,-5.71957,0	1/1:53:0,53:0:0:53:1862:-167.858,-15.9546,0	1/1:38:0,38:0:0:38:1315:-118.646,-11.4391,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:50:27,23:27:964:23:811:-58.2585,0,-72.0253	0/1:60:38,22:38:1359:22:780:-52.4612,0,-104.548	1/1:200:0,200:0:0:200:7080:-637.266,-60.206,0	1/1:67:1,66:1:32:66:2316:-205.5,-16.9697,0
chr04	30979552	.	C	T	23719.5	PASS	AB=0.498163;ABP=3.09007;AC=46;AF=0.25;AN=184;AO=1366;CIGAR=1X;DP=6263;DPB=6263;DPRA=0.842446;EPP=2731.02;EPPR=10045.4;GTI=1;LEN=1;MEANALT=1;MQM=59.9583;MQMR=59.9992;NS=92;NUMALT=1;ODDS=1.73542;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48859;QR=174716;RO=4889;RPL=28;RPP=2731.02;RPPR=10028.5;RPR=1338;RUN=1;SAF=0;SAP=2969.24;SAR=1366;SRF=2;SRP=10602;SRR=4887;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:4,16:4:144:16:572:-45.7928,0,-7.29302	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:218:218,0:218:7781:0:0:0,-65.6245,-700.322	0/1:30:23,7:23:816:7:252:-13.9981,0,-64.7308	0/1:26:16,10:16:568:10:356:-24.5545,0,-43.6251	0/1:74:43,31:43:1540:31:1097:-76.7618,0,-116.617	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:30:14,16:14:489:16:576:-43.1441,0,-35.308	0/1:66:30,36:30:1045:36:1283:-95.9053,0,-74.4896	0/0:53:52,0:52:1844:0:0:0,-15.6536,-165.881	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.64	0/1:34:16,18:16:572:18:644:-48.0556,0,-41.5784	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/1:11:4,7:4:144:7:241:-18.7134,0,-10.0023	0/1:310:149,161:149:5308:161:5769:-426.004,0,-384.536	0/1:141:72,69:72:2572:69:2480:-181.008,0,-189.285	0/1:48:24,24:24:847:24:864:-63.6331,0,-62.0993	0/0:48:47,1:47:1675:1:36:0,-10.8512,-147.438	0/0:38:36,2:36:1288:2:72:0,-4.60242,-109.387	0/1:38:22,16:22:788:16:576:-40.7358,0,-59.8057	0/0:182:181,0:181:6443:0:0:0,-54.4864,-579.599	0/1:169:96,73:96:3423:73:2620:-185.173,0,-257.41	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/0:216:215,0:215:7681:0:0:0,-64.7214,-690.963	0/1:75:30,45:30:1072:45:1600:-121.654,0,-74.2152	0/1:83:38,45:38:1360:45:1612:-120.385,0,-97.7151	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	.:.:.:.:.:.:.:.	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:139:71,68:71:2548:68:2440:-178.012,0,-187.727	0/1:97:53,44:53:1878:44:1563:-111.761,0,-140.097	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:197:195,2:195:6962:2:72:0,-52.4662,-619.809	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	0/1:81:41,40:41:1476:40:1436:-104.997,0,-108.753	0/1:35:16,19:16:572:19:684:-51.3543,0,-41.2774	0/0:34:33,0:33:1179:0:0:0,-9.93399,-106.164	0/0:82:81,1:81:2892:1:36:0,-21.0862,-256.918	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:100:47,53:47:1680:53:1897:-140.905,0,-121.384	0/1:73:30,43:30:1080:43:1518:-114.936,0,-75.5381	0/1:80:41,39:41:1476:39:1399:-102.127,0,-109.054	0/1:51:24,27:24:864:27:968:-72.0848,0,-62.73	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/1:54:24,30:24:864:30:1073:-80.6265,0,-61.8269	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/0:130:128,0:128:4585:0:0:0,-38.5318,-412.453	0/1:31:11,20:11:392:20:712:-55.0747,0,-26.2881	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:43:26,17:26:928:17:608:-42.1077,0,-70.894	0/0:68:68,0:68:2417:0:0:0,-20.47,-217.785	.:.:.:.:.:.:.:.	0/0:237:236,0:236:8444:0:0:0,-71.0431,-759.643	0/1:128:81,47:81:2904:47:1677:-112.683,0,-223.064	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:64:63,1:63:2252:1:36:0,-15.6676,-199.345	0/0:95:94,0:94:3359:0:0:0,-28.2968,-302.167	0/0:99:98,1:98:3504:1:36:0,-26.2037,-311.973	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:40:10,30:10:360:30:1071:-84.6604,0,-20.7031	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/1:106:47,59:47:1684:59:2106:-157.9,0,-119.938	0/0:100:100,0:100:3565:0:0:0,-30.103,-321.057	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:197:197,0:197:7071:0:0:0,-59.3029,-636.447	0/1:46:33,13:33:1188:13:468:-28.6123,0,-93.3812	0/0:93:91,2:91:3250:2:72:0,-21.1591,-285.884	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:77:37,40:37:1324:40:1432:-105.981,0,-96.2828	0/1:75:45,30:45:1604:30:1058:-72.952,0,-122.073	0/0:160:160,0:160:5725:0:0:0,-48.1648,-515.365	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/1:84:47,37:47:1692:37:1328:-94.5357,0,-127.28	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:52:52,0:52:1830:0:0:0,-15.6536,-164.977	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:51:24,27:24:851:27:968:-72.0848,0,-61.5569	0/1:58:20,38:20:720:38:1355:-104.79,0,-47.669	0/0:204:204,0:204:7314:0:0:0,-61.4101,-658.307	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018
chr04	30981116	.	G	A	127160	PASS	AB=0.515853;ABP=10.6523;AC=141;AF=0.758065;AN=186;AO=5873;CIGAR=1X;DP=7580;DPB=7580;DPRA=0;EPP=12376.8;EPPR=3597.53;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9154;MQMR=59.98;NS=93;NUMALT=1;ODDS=3.11712;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210279;QR=60858;RO=1703;RPL=44;RPP=12376.8;RPPR=3597.53;RPR=5829;RUN=1;SAF=5873;SAP=12756.1;SAR=0;SRF=1703;SRP=3701.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:89:46,43:46:1652:43:1521:-110.389,0,-122.177	1/1:90:1,89:1:36:89:3188:-283.439,-23.4944,0	1/1:99:0,99:0:0:99:3533:-318.167,-29.802,0	1/1:145:0,145:0:0:145:5185:-466.788,-43.6494,0	0/1:82:37,45:37:1320:45:1620:-121.406,0,-94.4175	0/1:57:25,32:25:888:32:1148:-86.4711,0,-63.0803	0/1:111:48,62:48:1720:62:2228:-167.303,0,-121.612	1/1:149:1,148:1:36:148:5269:-470.677,-41.2552,0	1/1:109:0,109:0:0:109:3920:-352.877,-32.8123,0	1/1:94:0,94:0:0:94:3338:-300.636,-28.2968,0	0/1:43:19,24:19:680:24:860:-64.7775,0,-48.5849	0/1:113:47,66:47:1668:66:2372:-179.721,0,-116.391	1/1:74:0,74:0:0:74:2664:-240.005,-22.2762,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:86:1,85:1:36:85:3033:-269.601,-22.2903,0	0/1:52:28,24:28:1000:24:864:-62.4152,0,-74.6618	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:29:9,20:9:320:20:720:-56.3989,0,-20.4125	0/1:157:71,86:71:2536:86:3065:-228.814,0,-181.23	0/1:154:79,75:79:2808:75:2673:-194.439,0,-206.6	0/1:78:49,29:49:1752:29:1044:-70.7945,0,-134.484	1/1:141:0,141:0:0:141:5039:-453.641,-42.4452,0	1/1:110:3,107:3:104:107:3829:-335.102,-23.4105,0	0/1:92:45,47:45:1616:47:1683:-124.062,0,-118.035	1/1:203:0,203:0:0:203:7277:-654.98,-61.1091,0	0/1:151:69,82:69:2453:82:2935:-218.928,0,-175.568	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:169:0,169:0:0:169:6068:-546.22,-50.8741,0	0/1:93:49,44:49:1760:44:1580:-114.496,0,-130.688	0/1:99:43,56:43:1544:56:1978:-148.486,0,-109.363	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:153:85,68:85:3036:68:2431:-172.964,0,-227.413	0/1:94:53,41:53:1904:41:1472:-104.479,0,-143.341	1/1:36:0,36:0:0:36:1288:-116.215,-10.8371,0	.:.:.:.:.:.:.:.	1/1:107:3,104:3:108:104:3732:-325.997,-22.135,0	0/1:23:15,8:15:540:8:288:-19.3437,0,-42.0128	0/1:185:87,98:87:3120:98:3505:-259.968,0,-225.336	0/1:58:35,23:35:1260:23:828:-57.3844,0,-96.2457	1/1:59:0,59:0:0:59:2111:-190.259,-17.7608,0	1/1:112:0,112:0:0:112:4024:-362.341,-33.7154,0	1/1:122:0,122:0:0:122:4384:-394.714,-36.7257,0	0/1:129:57,72:57:2040:72:2569:-192.624,0,-145.039	0/1:77:48,29:48:1728:29:1029:-69.7418,0,-132.626	0/1:101:38,63:38:1341:63:2249:-172.267,0,-90.584	0/1:81:41,40:41:1468:40:1417:-103.442,0,-108.033	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:88:0,88:0:0:88:3154:-284.07,-26.4906,0	0/1:54:24,30:24:849:30:1080:-81.2576,0,-60.4722	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:103:0,103:0:0:103:3689:-332.211,-31.0061,0	0/1:67:29,38:29:1029:38:1364:-102.887,0,-72.7521	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/1:96:38,58:38:1360:58:2083:-158.841,0,-93.8017	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:133:0,132:0:0:132:4748:-426.926,-39.736,0	0/1:124:57,67:57:2048:67:2397:-178.5,0,-147.262	0/1:64:8,56:8:288:56:2008:-161.727,0,-7.00149	1/1:56:0,56:0:0:56:1992:-179.363,-16.8577,0	1/1:153:1,152:1:36:152:5423:-484.553,-42.4593,0	1/1:89:0,89:0:0:89:3196:-287.86,-26.7917,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:63:0,63:0:0:63:2251:-202.849,-18.9649,0	0/1:32:13,19:13:460:19:684:-52.2574,0,-32.1024	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:75:47,27:47:1676:27:968:-64.4656,0,-128.491	1/1:54:0,54:0:0:54:1936:-174.498,-16.2556,0	1/1:212:0,212:0:0:212:7608:-684.755,-63.8184,0	1/1:106:0,106:0:0:106:3792:-341.479,-31.9092,0	0/1:109:58,51:58:2080:51:1826:-131.809,0,-154.658	1/1:47:1,46:1:36:46:1648:-145.01,-10.5501,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:59:31,28:31:1116:28:991:-71.7428,0,-82.9909	0/1:124:60,63:60:2133:63:2264:-166.636,0,-154.842	1/1:237:0,237:0:0:237:8478:-763.018,-71.3441,0	1/1:56:0,56:0:0:56:2009:-181.081,-16.8577,0	1/1:52:0,52:0:0:52:1859:-167.589,-15.6536,0	0/1:49:25,24:25:896:24:864:-63.3321,0,-66.2099	0/1:118:59,59:59:2099:59:2104:-154.103,0,-153.658	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:83:0,83:0:0:83:2965:-267.078,-24.9855,0	1/1:87:0,87:0:0:87:3119:-280.936,-26.1896,0	1/1:36:0,36:0:0:36:1286:-116.037,-10.8371,0	0/1:81:37,44:37:1302:44:1578:-117.737,0,-93.0964	0/1:58:42,16:42:1504:16:576:-34.7152,0,-118.195	1/1:124:0,124:0:0:124:4445:-400.216,-37.3277,0	1/1:99:0,99:0:0:99:3549:-319.616,-29.802,0
chr04	31011182	.	C	T	21288.4	PASS	AB=0.50445;ABP=3.60943;AC=47;AF=0.25;AN=188;AO=1795;CIGAR=1X;DP=7595;DPB=7595;DPRA=1.10443;EPP=3874.79;EPPR=12584.5;GTI=4;LEN=1;MEANALT=1.03704;MQM=33.8095;MQMR=37.2416;NS=94;NUMALT=1;ODDS=0.317396;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64090;QR=204575;RO=5794;RPL=1793;RPP=3883.45;RPPR=12567.2;RPR=2;RUN=1;SAF=1790;SAP=3857.49;SAR=5;SRF=5792;SRP=12567.2;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:8,10:8:284:10:360:-25.6709,0,-18.0111	0/0:97:96,1:96:3427:1:36:0,-26.4637,-260.926	0/0:144:143,0:143:5048:0:0:0,-43.0473,-393.364	0/0:217:198,19:198:7008:19:680:0,-4.28189,-529.935	0/1:67:40,27:40:1424:27:960:-66.2916,0,-105.92	0/1:34:17,17:17:612:17:593:-35.4692,0,-42.6157	0/1:79:49,30:49:1748:30:1071:-58.6206,0,-121.98	0/0:124:122,2:122:4277:2:72:0,-32.3848,-333.295	0/0:51:51,0:51:1788:0:0:0,-15.3525,-142.791	0/0:93:93,0:93:3305:0:0:0,-27.9958,-275.442	0/1:45:22,23:22:784:23:824:-49.7617,0,-52.5141	0/1:75:38,37:38:1348:37:1328:-67.6172,0,-81.0809	0/0:69:69,0:69:2434:0:0:0,-20.7711,-188.188	0/0:71:71,0:71:2500:0:0:0,-21.3731,-199.79	0/0:66:66,0:66:2333:0:0:0,-19.868,-195.73	0/1:53:28,25:28:986:25:885:-49.1773,0,-64.1234	0/1:55:30,25:30:1039:25:865:-43.2157,0,-64.1027	0/0:39:39,0:39:1392:0:0:0,-11.7402,-107.383	0/1:18:9,9:9:320:9:315:-16.7544,0,-19.9717	0/1:188:91,97:91:3185:97:3480:-209.309,0,-210.796	0/1:117:64,53:64:2233:53:1887:-102.824,0,-145.181	0/1:79:15,64:15:532:64:2292:-170.322,0,-23.2847	0/0:87:87,0:87:3089:0:0:0,-26.1896,-260.658	0/1:65:57,8:57:2028:8:288:-1.47124,0,-145.907	0/1:46:23,23:23:820:23:824:-51.7704,0,-53.876	0/0:201:198,2:198:7005:2:72:0,-54.4943,-598.024	0/1:200:94,106:94:3338:106:3761:-213.146,0,-208.409	0/0:32:32,0:32:1109:0:0:0,-9.63296,-90.5989	0/0:255:255,0:255:9085:0:0:0,-76.7626,-779.547	0/1:52:30,22:30:1072:22:792:-43.047,0,-71.6128	0/1:101:54,47:54:1890:47:1663:-100.963,0,-129.601	1/1:6:0,6:0:0:6:216:-15.9652,-1.80618,0	0/1:14:11,3:11:388:3:108:-3.91332,0,-27.6716	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.7333	0/1:9:7,2:7:243:2:72:-2.48951,0,-14.3886	0/0:12:12,0:12:432:0:0:0,-3.61236,-33.7776	0/1:201:101,100:101:3536:100:3574:-224.56,0,-242.922	0/1:141:76,65:76:2691:65:2317:-136.068,0,-179.723	0/0:35:35,0:35:1218:0:0:0,-10.536,-94.8751	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.0618	0/0:102:102,0:102:3607:0:0:0,-30.7051,-291.299	0/1:16:5,11:5:180:11:384:-23.8974,0,-9.84659	0/1:95:44,51:44:1553:51:1828:-117.036,0,-102.145	0/1:56:32,24:32:1131:24:856:-48.1732,0,-78.0995	0/0:51:50,0:50:1723:0:0:0,-15.0515,-144.478	0/0:48:48,0:48:1724:0:0:0,-14.4494,-148.871	0/0:91:91,0:91:3230:0:0:0,-27.3937,-266.448	0/1:173:88,85:88:3106:85:3032:-179.499,0,-208.831	0/1:89:42,47:42:1508:47:1692:-100.424,0,-99.9283	0/1:124:68,56:68:2431:56:2008:-116.261,0,-167.074	0/1:69:29,40:29:1028:40:1436:-96.7295,0,-67.8517	0/1:6:5,1:5:180:1:36:-1.24836,0,-13.4403	0/0:128:127,1:127:4501:1:36:0,-35.7956,-355.528	0/1:41:12,29:12:419:29:1040:-70.1818,0,-24.3362	0/1:4:3,1:3:104:1:36:-1.53208,0,-7.20352	0/0:96:96,0:96:3378:0:0:0,-28.8989,-271.704	0/1:38:23,15:23:815:15:532:-31.3238,0,-59.5988	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.7588	0/1:17:5,12:5:180:12:426:-28.3073,0,-10.6311	0/1:56:32,24:32:1116:24:856:-45.5302,0,-73.5111	0/0:105:105,0:105:3698:0:0:0,-31.6081,-309.988	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:203:202,0:202:7171:0:0:0,-60.8081,-613.706	0/1:155:75,80:75:2631:80:2880:-173.623,0,-173.965	0/0:77:74,3:74:2605:3:108:0,-13.7753,-200.155	0/0:66:66,0:66:2269:0:0:0,-19.868,-192.357	0/0:123:123,0:123:4379:0:0:0,-37.0267,-370.081	0/0:133:133,0:133:4698:0:0:0,-40.037,-394.685	0/0:17:17,0:17:604:0:0:0,-5.11751,-48.7271	0/0:56:56,0:56:1987:0:0:0,-16.8577,-153.675	0/1:60:30,30:30:1072:30:1080:-68.2032,0,-74.1712	0/1:27:16,11:16:567:11:385:-21.1425,0,-39.7467	0/1:63:28,35:28:992:35:1256:-68.8847,0,-59.4611	0/0:46:46,0:46:1627:0:0:0,-13.8474,-125.209	0/0:110:107,3:107:3757:3:108:0,-23.0381,-289.864	0/0:195:194,0:194:6832:0:0:0,-58.3998,-572.715	0/1:124:61,63:61:2154:63:2249:-153.707,0,-151.449	0/0:103:102,1:102:3621:1:27:0,-28.5596,-275.482	0/0:6:6,0:6:212:0:0:0,-1.80618,-16.6575	0/1:160:63,97:63:2213:97:3453:-207.856,0,-130.74	0/1:120:48,72:48:1676:72:2575:-144.658,0,-97.0773	0/0:173:173,0:173:6153:0:0:0,-52.0782,-516.74	0/0:98:98,0:98:3459:0:0:0,-29.5009,-290.468	0/0:70:70,0:70:2461:0:0:0,-21.0721,-206.868	0/1:71:35,36:35:1232:36:1281:-75.9429,0,-82.2595	0/1:143:74,68:74:2606:68:2440:-141.025,0,-176.802	0/0:29:29,0:29:993:0:0:0,-8.72987,-76.9138	0/0:59:59,0:59:2088:0:0:0,-17.7608,-161.366	0/0:59:59,0:59:2091:0:0:0,-17.7608,-161.263	0/0:26:26,0:26:902:0:0:0,-7.82678,-73.0111	0/1:54:23,31:23:808:31:1099:-63.3005,0,-49.0627	0/1:65:20,45:20:691:45:1616:-104.769,0,-39.1412	0/0:135:135,0:135:4654:0:0:0,-40.639,-388.152	0/0:93:93,0:93:3271:0:0:0,-27.9958,-273.766
chr04	31011319	.	C	T	39491.3	PASS	AB=0.539258;ABP=58.592;AC=45;AF=0.241935;AN=186;AO=2251;CIGAR=1X;DP=8405;DPB=8405;DPRA=1.07306;EPP=4391.96;EPPR=3196.14;GTI=2;LEN=1;MEANALT=1.03846;MQM=47.2372;MQMR=59.812;NS=93;NUMALT=1;ODDS=0.0913824;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80002;QR=217811;RO=6149;RPL=2193;RPP=4400.19;RPPR=3196.14;RPR=58;RUN=1;SAF=2250;SAP=4882.31;SAR=1;SRF=6147;SRP=13338;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:14,21:14:492:21:739:-55.7135,0,-34.0763	0/0:117:116,1:116:4104:1:32:0,-32.072,-366.393	0/0:105:104,0:104:3673:0:0:0,-31.3071,-330.548	0/0:174:174,0:174:6176:0:0:0,-52.3792,-555.828	0/1:74:25,49:25:885:49:1734:-132.012,0,-57.6903	0/1:40:20,20:20:703:20:716:-51.0746,0,-51.5372	0/1:128:60,68:60:2121:68:2404:-176.238,0,-152.625	0/0:102:102,0:102:3626:0:0:0,-30.7051,-326.532	0/0:51:51,0:51:1779:0:0:0,-15.3525,-160.387	0/0:83:83,0:83:2941:0:0:0,-24.9855,-264.924	0/1:55:27,28:27:950:28:989:-71.226,0,-69.1444	0/1:81:48,33:48:1707:33:1171:-78.23,0,-129.531	0/0:65:65,0:65:2299:0:0:0,-19.5669,-207.171	0/0:95:95,0:95:3382:0:0:0,-28.5978,-304.596	0/0:67:67,0:67:2382:0:0:0,-20.169,-214.581	0/1:50:20,30:20:703:30:1056:-79.1943,0,-48.542	0/1:61:30,31:30:1067:31:1108:-77.6488,0,-77.9784	0/0:60:60,0:60:2101:0:0:0,-18.0618,-189.356	0/1:38:13,25:13:460:25:900:-67.8389,0,-30.2962	0/1:174:57,117:57:2024:117:4208:-321.7,0,-130.051	0/1:74:33,41:33:1171:41:1464:-107.957,0,-83.4205	0/1:115:34,81:34:1197:81:2894:-224.489,0,-73.415	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.437	0/0:65:62,3:62:2160:3:99:0,-10.3619,-185.458	0/1:113:48,65:48:1716:65:2297:-168.937,0,-120.339	0/0:262:262,0:262:9320:0:0:0,-78.8699,-838.623	0/1:326:171,155:171:6070:155:5539:-390.161,0,-448.269	0/0:46:46,0:46:1632:0:0:0,-13.8474,-146.24	0/0:334:334,0:334:11777:0:0:0,-100.544,-1059.5	0/1:160:82,78:82:2940:78:2788:-199.414,0,-216.669	0/1:121:62,59:62:2178:59:2116:-152.343,0,-159.836	0/1:5:3,2:3:104:2:72:-5.24697,0,-8.19766	0/1:27:15,12:15:540:12:432:-30.6675,0,-40.8087	.:.:.:.:.:.:.:.	0/1:12:4,8:4:144:8:288:-22.2333,0,-9.70126	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:206:91,114:91:3203:114:4024:-297.028,0,-226.473	0/1:216:105,111:105:3726:111:3946:-282.208,0,-270.496	0/0:81:81,0:81:2807:0:0:0,-24.3834,-252.853	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:110:106,4:106:3776:4:144:0,-19.8433,-326.768	0/1:68:26,42:26:928:42:1477:-110.128,0,-63.3682	0/1:113:45,68:45:1599:68:2435:-179.987,0,-110.165	0/1:101:52,49:52:1845:49:1694:-121.057,0,-135.924	0/0:69:69,0:69:2430:0:0:0,-20.7711,-218.732	0/0:91:91,0:91:3237:0:0:0,-27.3937,-291.551	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.63	0/1:132:66,66:66:2356:66:2355:-170.563,0,-172.563	0/1:140:64,75:64:2271:75:2670:-194.602,0,-162.405	0/1:101:45,56:45:1596:56:2001:-147.149,0,-113.526	0/1:139:57,82:57:2028:82:2881:-215.417,0,-140.95	0/1:6:3,3:3:108:3:108:-8.23799,0,-8.26899	0/0:115:115,0:115:4105:0:0:0,-34.6184,-369.621	0/1:38:14,24:14:500:24:856:-65.3756,0,-33.897	0/1:19:10,9:10:352:9:315:-22.1155,0,-26.2986	0/0:63:63,0:63:2225:0:0:0,-18.9649,-199.812	0/1:40:17,23:17:604:23:811:-60.1758,0,-42.5931	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.8129	0/1:17:7,10:7:248:10:360:-26.8406,0,-17.5467	0/1:55:24,31:24:855:31:1104:-81.7811,0,-60.7135	0/0:142:142,0:142:5049:0:0:0,-42.7463,-454.445	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:175:174,0:174:6151:0:0:0,-52.3792,-553.28	0/1:129:71,58:71:2544:58:2050:-143.707,0,-190.354	0/0:75:74,1:74:2617:1:36:0,-18.9908,-232.19	0/0:74:73,1:73:2580:1:36:0,-19.2217,-229.394	0/0:94:93,0:93:3310:0:0:0,-27.9958,-297.748	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.893	0/0:27:27,0:27:940:0:0:0,-8.12781,-84.9108	0/0:71:71,0:71:2513:0:0:0,-21.3731,-226.394	0/1:92:40,52:40:1432:52:1846:-137.887,0,-101.422	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:135:59,76:59:2080:76:2683:-195.888,0,-146.829	0/0:76:76,0:76:2692:0:0:0,-22.8783,-242.524	0/0:76:76,0:76:2706:0:0:0,-22.8783,-243.783	0/0:166:166,0:166:5862:0:0:0,-49.971,-527.642	0/1:111:55,56:55:1960:56:1995:-141.252,0,-143.24	0/0:99:98,1:98:3489:1:36:0,-26.4144,-310.804	0/1:15:6,9:6:212:9:324:-24.6609,0,-14.9093	0/1:123:52,71:52:1828:71:2535:-188.249,0,-127.771	0/1:99:42,57:42:1476:57:2019:-146.642,0,-103.33	0/0:153:152,1:152:5372:1:36:0,-42.4662,-479.89	0/0:109:109,0:109:3863:0:0:0,-32.8123,-347.694	0/0:69:69,0:69:2441:0:0:0,-20.7711,-219.888	0/1:82:50,32:50:1748:32:1128:-76.1885,0,-132.917	0/1:135:71,64:71:2464:64:2258:-160.014,0,-180.145	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:94:94,0:94:3314:0:0:0,-28.2968,-298.465	0/0:70:70,0:70:2488:0:0:0,-21.0721,-224.174	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:79:46,33:46:1643:33:1184:-81.088,0,-124.377	0/1:72:27,45:27:968:45:1609:-121.863,0,-65.7632	0/0:106:106,0:106:3736:0:0:0,-31.9092,-336.298	0/0:117:117,0:117:4127:0:0:0,-35.2205,-371.492
chr04	31011323	.	T	C	129897	PASS	AB=0.464704;ABP=48.2298;AC=140;AF=0.752688;AN=186;AO=6222;CIGAR=1X;DP=8471;DPB=8471;DPRA=0;EPP=13487.9;EPPR=4871.46;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.8039;MQMR=47.2329;NS=93;NUMALT=1;ODDS=0.0704448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221383;QR=80093;RO=2246;RPL=6219;RPP=13487.9;RPPR=4880.14;RPR=3;RUN=1;SAF=6220;SAP=13496.5;SAR=2;SRF=2245;SRP=4871.46;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:20,14:20:720:14:495:-34.648,0,-54.1014	1/1:116:1,115:1:36:115:4087:-364.532,-31.4388,0	1/1:107:0,107:0:0:107:3814:-343.453,-32.2102,0	1/1:174:0,174:0:0:174:6170:-555.321,-52.3792,0	0/1:73:49,24:49:1745:24:860:-55.7466,0,-133.32	0/1:41:20,21:20:720:21:752:-55.5576,0,-51.0741	0/1:131:68,63:68:2432:63:2250:-163.327,0,-177.767	1/1:105:0,105:0:0:105:3729:-335.795,-31.6082,0	1/1:54:0,54:0:0:54:1914:-172.536,-16.2556,0	1/1:82:0,82:0:0:82:2922:-263.214,-24.6845,0	0/1:55:28,27:28:1000:27:959:-70.0126,0,-72.1916	0/1:80:34,46:34:1195:46:1624:-122.364,0,-81.6445	1/1:65:0,65:0:0:65:2291:-206.449,-19.567,0	1/1:95:0,95:0:0:95:3378:-304.237,-28.5979,0	1/1:67:0,67:0:0:67:2408:-216.92,-20.169,0	0/1:48:28,20:28:1004:20:703:-49.1441,0,-74.9379	0/1:60:30,30:30:1072:30:1076:-79.0911,0,-75.132	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:38:25,13:25:883:13:464:-30.6584,0,-66.4437	0/1:174:117,57:117:4196:57:2040:-131.493,0,-320.726	0/1:77:42,35:42:1508:35:1237:-88.453,0,-110.881	0/1:118:81,37:81:2903:37:1302:-81.9583,0,-224.373	1/1:27:0,27:0:0:27:972:-87.7975,-8.12781,0	1/1:66:2,64:2:72:64:2261:-196.942,-13.061,0	0/1:114:65,49:65:2327:49:1737:-121.925,0,-171.314	1/1:261:0,261:0:0:261:9282:-834.802,-78.5688,0	0/1:328:154,174:154:5497:174:6225:-461.606,0,-385.401	1/1:47:0,47:0:0:47:1660:-148.877,-14.1484,0	1/1:342:0,342:0:0:342:12177:-1095.48,-102.952,0	0/1:161:78,83:78:2776:83:2962:-218.347,0,-197.911	0/1:121:59,62:59:2112:62:2185:-160.486,0,-152.013	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.24697	0/1:27:12,15:12:432:15:540:-40.8087,0,-30.6675	.:.:.:.:.:.:.:.	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.0642	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:204:110,94:110:3910:94:3345:-239.857,0,-287.265	0/1:223:115,108:115:4093:108:3860:-280.144,0,-293.024	1/1:85:0,85:0:0:85:2973:-267.787,-25.5876,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:108:4,104:4:144:104:3712:-321.011,-19.2413,0	0/1:67:39,28:39:1387:28:1004:-70.5069,0,-101.628	0/1:115:68,47:68:2411:47:1680:-116.851,0,-177.385	0/1:97:45,51:45:1594:51:1809:-133.895,0,-113.347	1/1:74:0,74:0:0:74:2608:-234.744,-22.2762,0	1/1:91:0,91:0:0:91:3244:-292.18,-27.3937,0	1/1:93:0,93:0:0:93:3289:-296.108,-27.9958,0	0/1:133:65,68:65:2331:68:2425:-178.31,0,-168.417	0/1:142:78,64:78:2772:64:2295:-164.019,0,-203.144	0/1:100:55,45:55:1972:45:1608:-114.907,0,-144.919	0/1:138:82,56:82:2923:56:1994:-138.19,0,-219.424	0/1:6:3,3:3:104:3:104:-7.89663,0,-7.86946	1/1:117:0,117:0:0:117:4139:-372.682,-35.2205,0	0/1:38:24,14:24:864:14:504:-34.259,0,-66.0782	0/1:19:9,10:9:324:10:360:-27.0247,0,-22.8422	1/1:63:0,63:0:0:63:2198:-198.083,-18.9649,0	0/1:41:24,17:24:860:17:612:-43.0149,0,-64.2404	1/1:10:0,10:0:0:10:356:-32.2674,-3.0103,0	0/1:17:10,7:10:356:7:252:-17.9114,0,-26.4945	0/1:58:34,24:34:1216:24:840:-58.4557,0,-90.6125	1/1:142:0,141:0:0:141:5038:-453.094,-42.4452,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:177:0,177:0:0:177:6322:-568.953,-53.2823,0	0/1:130:59,71:59:2112:71:2539:-189.514,0,-148.867	1/1:77:1,76:1:36:76:2682:-238.038,-19.5928,0	1/1:77:1,76:1:36:76:2711:-241.179,-20.1248,0	1/1:98:0,98:0:0:98:3487:-313.96,-29.5009,0	1/1:72:0,72:0:0:72:2550:-229.75,-21.6742,0	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	1/1:73:0,73:0:0:73:2616:-235.66,-21.9752,0	0/1:92:52,40:52:1841:40:1421:-100.43,0,-137.444	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.576182	0/1:137:76,61:76:2724:61:2168:-154.143,0,-198.683	1/1:78:0,78:0:0:78:2741:-246.932,-23.4803,0	1/1:77:0,76:0:0:76:2711:-243.874,-22.8783,0	1/1:166:0,166:0:0:166:5948:-535.371,-49.971,0	0/1:112:55,57:55:1909:57:2009:-147.357,0,-134.491	1/1:95:0,95:0:0:95:3379:-304.306,-28.5979,0	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.6609	0/1:118:68,50:68:2440:50:1788:-125.681,0,-181.158	0/1:98:58,40:58:2084:40:1409:-97.6043,0,-152.643	1/1:154:1,153:1:36:153:5450:-486.734,-42.7672,0	1/1:110:0,110:0:0:110:3906:-350.855,-33.1133,0	1/1:71:0,71:0:0:71:2552:-229.874,-21.3731,0	0/1:83:32,51:32:1136:51:1816:-138.736,0,-76.5718	0/1:137:65,72:65:2291:72:2565:-188.631,0,-161.758	1/1:44:0,44:0:0:44:1562:-140.87,-13.2453,0	1/1:93:0,93:0:0:93:3314:-298.465,-27.9958,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:47:0,47:0:0:47:1662:-149.866,-14.1484,0	0/1:80:34,46:34:1207:46:1640:-123.806,0,-82.4473	0/1:71:45,26:45:1594:26:932:-62.8257,0,-120.823	1/1:110:0,110:0:0:110:3895:-350.578,-33.1133,0	1/1:119:0,119:0:0:119:4260:-383.462,-35.8226,0
chr04	31011478	.	C	T	238015	PASS	AB=0.482109;ABP=17.6179;AC=142;AF=0.755319;AN=188;AO=8851;CIGAR=1X;DP=11603;DPB=11603;DPRA=62.371;EPP=18997.5;EPPR=5931.21;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.985;MQMR=59.9975;NS=94;NUMALT=1;ODDS=5.55519;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312514;QR=97359;RO=2750;RPL=4130;RPP=88.7016;RPPR=58.8811;RPR=4721;RUN=1;SAF=4104;SAP=104.444;SAR=4747;SRF=1237;SRP=63.1609;SRR=1513;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:44,27:44:1556:27:948:-64.2615,0,-118.956	1/1:126:0,126:0:0:126:4412:-397.257,-37.9298,0	1/1:230:0,230:0:0:230:8089:-728.037,-69.2369,0	1/1:243:0,243:0:0:243:8545:-769.065,-73.1503,0	0/1:66:35,31:35:1240:31:1100:-79.4423,0,-92.0365	0/1:29:17,12:17:612:12:428:-30.1289,0,-46.6836	0/1:139:68,71:68:2412:71:2504:-183.771,0,-175.491	1/1:156:0,156:0:0:156:5457:-491.267,-46.9607,0	1/1:155:0,155:0:0:155:5407:-486.772,-46.6597,0	1/1:75:0,75:0:0:75:2634:-237.303,-22.5773,0	0/1:117:77,40:77:2722:40:1423:-93.1462,0,-210.003	0/1:184:85,99:85:3024:99:3461:-256.315,0,-217.003	1/1:143:0,143:0:0:143:5057:-455.276,-43.0473,0	1/1:153:0,153:0:0:153:5422:-488.113,-46.0576,0	1/1:132:1,131:1:36:131:4620:-412.37,-36.1377,0	0/1:135:70,65:70:2457:65:2317:-168.15,0,-180.743	0/1:142:76,66:76:2664:66:2355:-169.462,0,-197.257	1/1:101:0,101:0:0:101:3582:-322.399,-30.404,0	0/1:70:23,47:23:816:47:1666:-129.152,0,-52.6896	0/1:164:76,88:76:2696:88:3096:-229.503,0,-193.514	0/1:273:133,140:133:4715:140:4946:-363.113,0,-342.33	0/1:48:25,23:25:892:23:785:-56.5141,0,-66.1502	1/1:87:0,87:0:0:87:3112:-280.307,-26.1896,0	1/1:90:8,82:8:279:82:2890:-234.89,-1.64517,0	0/1:63:34,29:34:1220:29:1024:-73.5077,0,-91.1419	1/1:294:0,294:0:0:294:10367:-932.97,-88.5028,0	0/1:295:155,140:155:5507:140:4937:-355.683,0,-406.954	1/1:65:0,65:0:0:65:2323:-209.33,-19.567,0	1/1:200:0,200:0:0:200:7039:-633.583,-60.206,0	0/1:117:62,55:62:2200:55:1976:-142.894,0,-163.043	0/1:153:74,79:74:2651:79:2787:-205.015,0,-192.778	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:13:0,13:0:0:13:456:-41.3732,-3.91339,0	0/1:371:193,178:193:6782:178:6271:-452.808,0,-498.776	0/1:90:38,52:38:1336:52:1868:-141.307,0,-93.4445	1/1:109:1,108:1:32:108:3848:-343.316,-29.613,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:192:3,189:3:104:189:6625:-586.637,-48.095,0	0/1:73:36,37:36:1288:37:1306:-95.8648,0,-94.2484	0/1:147:75,72:75:2684:72:2555:-185.949,0,-197.554	0/1:170:91,79:91:3225:79:2804:-201.424,0,-239.298	1/1:131:0,131:0:0:131:4625:-416.416,-39.4349,0	1/1:102:0,102:0:0:102:3595:-323.758,-30.7051,0	1/1:105:1,104:1:36:104:3656:-325.642,-28.0099,0	0/1:173:92,81:92:3252:81:2872:-206.64,0,-240.818	0/1:85:42,43:42:1480:43:1528:-112.226,0,-107.904	0/1:140:72,68:72:2560:68:2391:-173.304,0,-188.507	0/1:110:52,58:52:1864:58:2052:-151.839,0,-134.926	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:156:0,156:0:0:156:5515:-496.473,-46.9607,0	0/1:111:53,58:53:1885:58:2051:-151.447,0,-136.512	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:154:0,153:0:0:153:5368:-483.049,-46.0576,0	0/1:55:27,28:27:964:28:977:-71.6839,0,-70.5202	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:13:7,6:7:244:6:208:-15.1457,0,-18.386	0/1:95:55,40:55:1947:40:1390:-96.7951,0,-146.908	1/1:172:2,169:2:72:169:6030:-535.969,-44.9992,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:143:0,143:0:0:143:5011:-451.141,-43.0473,0	0/1:169:94,75:94:3305:75:2656:-188.412,0,-246.795	1/1:106:6,100:6:216:100:3551:-300.01,-12.1187,0	1/1:79:0,79:0:0:79:2749:-247.654,-23.7814,0	1/1:202:2,200:2:72:200:7054:-628.095,-53.9713,0	1/1:171:1,170:1:36:170:6017:-538.041,-47.8779,0	1/1:83:0,83:0:0:83:2967:-267.263,-24.9855,0	1/1:100:0,100:0:0:100:3536:-318.45,-30.103,0	0/1:146:64,82:64:2232:82:2935:-220.433,0,-157.187	0/1:16:8,8:8:284:8:271:-19.9029,0,-21.0869	0/1:84:44,40:44:1549:40:1415:-102.36,0,-114.413	1/1:111:0,111:0:0:111:3922:-353.177,-33.4143,0	1/1:217:0,217:0:0:217:7556:-680.094,-65.3235,0	1/1:204:0,204:0:0:204:7235:-651.212,-61.4101,0	0/1:56:28,28:28:1008:28:1000:-73.4577,0,-74.1787	1/1:209:1,208:1:32:208:7366:-659.782,-59.716,0	0/1:13:6,7:6:216:7:244:-18.386,0,-15.8771	0/1:158:84,74:84:2977:74:2625:-188.934,0,-220.6	0/1:125:61,64:61:2175:64:2256:-165.675,0,-158.387	1/1:212:0,212:0:0:212:7460:-671.456,-63.8184,0	1/1:164:0,164:0:0:164:5798:-521.938,-49.3689,0	1/1:130:1,129:1:36:129:4576:-408.409,-35.5356,0	0/1:152:80,72:80:2834:72:2559:-184.804,0,-209.543	0/1:239:132,107:132:4620:107:3759:-266.567,0,-344.021	1/1:70:0,70:0:0:70:2495:-224.803,-21.0721,0	1/1:155:0,155:0:0:155:5445:-490.184,-46.6597,0	1/1:132:0,132:0:0:132:4695:-422.71,-39.736,0	1/1:93:0,93:0:0:93:3282:-295.6,-27.9958,0	0/1:203:106,97:106:3738:97:3443:-248.976,0,-275.513	0/1:174:116,58:116:4111:58:2072:-134.372,0,-317.797	1/1:132:0,132:0:0:132:4652:-418.845,-39.736,0	1/1:229:0,229:0:0:229:8132:-731.895,-68.9359,0
chr04	31018326	.	A	C	126769	PASS	AB=0.450985;ABP=94.1186;AC=140;AF=0.744681;AN=188;AO=6154;CIGAR=1X;DP=8585;DPB=8585;DPRA=18.6413;EPP=13366.3;EPPR=5277.52;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9943;MQMR=59.9876;NS=94;NUMALT=1;ODDS=0.144209;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218456;QR=86423;RO=2429;RPL=6153;RPP=13357.6;RPPR=5277.52;RPR=1;RUN=1;SAF=6153;SAP=13357.6;SAR=1;SRF=2429;SRP=5277.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:20,23:20:707:23:812:-60.4566,0,-51.0103	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0	1/1:102:0,102:0:0:102:3627:-326.635,-30.7051,0	1/1:169:0,169:0:0:169:5960:-536.512,-50.8741,0	0/1:90:27,62:27:959:62:2212:-172.194,0,-59.4741	0/1:69:43,26:43:1540:26:932:-63.4278,0,-118.122	0/1:162:77,85:77:2710:85:3006:-222.004,0,-195.376	1/1:85:0,85:0:0:85:3019:-271.941,-25.5876,0	1/1:109:0,109:0:0:109:3883:-349.666,-32.8123,0	1/1:93:0,93:0:0:93:3284:-295.776,-27.9958,0	0/1:51:30,21:30:1076:21:748:-52.2928,0,-81.8003	0/1:65:34,31:34:1216:31:1108:-80.464,0,-90.1796	1/1:50:0,50:0:0:50:1783:-160.753,-15.0515,0	1/1:79:0,79:0:0:79:2796:-251.88,-23.7814,0	1/1:53:0,53:0:0:53:1882:-169.657,-15.9546,0	0/1:43:22,21:22:773:21:755:-55.3328,0,-56.9452	0/1:63:25,38:25:888:38:1351:-102.925,0,-61.2741	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/1:263:144,119:144:5149:119:4227:-301.438,0,-384.379	0/1:145:54,91:54:1891:91:3201:-244.662,0,-126.816	0/1:150:111,39:111:3964:39:1391:-80.3337,0,-311.798	1/1:135:0,135:0:0:135:4776:-429.999,-40.6391,0	1/1:114:8,106:8:284:106:3745:-311.348,-8.41407,0	0/1:79:48,31:48:1686:31:1116:-76.9703,0,-128.241	1/1:226:0,226:0:0:226:8036:-723.262,-68.0328,0	0/1:168:87,81:87:3108:81:2864:-207.424,0,-229.375	1/1:24:0,24:0:0:24:833:-75.2847,-7.22472,0	1/1:222:0,222:0:0:222:7899:-710.936,-66.8287,0	0/1:136:92,44:92:3257:44:1561:-99.8404,0,-252.412	0/1:154:109,45:109:3897:45:1597:-97.6596,0,-303.937	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:13:3,10:3:104:10:347:-27.6502,0,-5.78942	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:154:76,78:76:2719:78:2712:-197.964,0,-198.594	0/1:227:132,95:132:4683:95:3384:-236.44,0,-353.296	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:141:6,135:6:216:135:4802:-412.546,-22.6547,0	0/1:28:18,10:18:640:10:356:-23.9524,0,-49.5005	0/1:143:60,83:60:2140:83:2935:-221.336,0,-149.821	0/1:41:20,21:20:716:21:752:-55.664,0,-52.4255	1/1:40:1,39:1:36:39:1370:-119.999,-8.44293,0	1/1:130:2,128:2:72:128:4538:-401.752,-32.2972,0	1/1:76:0,76:0:0:76:2701:-243.333,-22.8783,0	0/1:159:97,62:97:3461:62:2190:-149.499,0,-263.838	0/1:158:84,74:84:2985:74:2637:-190.014,0,-221.319	0/1:145:85,59:85:3010:59:2077:-143.489,0,-227.422	0/1:200:112,88:112:4004:88:3122:-221,0,-300.344	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:116:0,116:0:0:116:4153:-373.952,-34.9195,0	0/1:81:47,34:47:1663:34:1207:-84.5517,0,-125.573	0/1:14:7,7:7:244:7:252:-18.8145,0,-18.085	1/1:108:0,108:0:0:108:3774:-339.859,-32.5112,0	0/1:66:31,35:31:1104:35:1215:-89.7817,0,-79.8027	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:34:23,11:23:820:11:396:-25.7477,0,-63.8875	0/1:99:46,53:46:1644:53:1890:-140.575,0,-118.447	1/1:88:2,86:2:72:86:3057:-268.523,-19.6539,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:177:0,177:0:0:177:6268:-564.216,-53.2823,0	0/1:188:101,87:101:3604:87:3116:-224.073,0,-267.974	1/1:95:1,94:1:36:94:3360:-299.017,-24.9996,0	1/1:70:0,70:0:0:70:2495:-224.803,-21.0721,0	1/1:180:0,180:0:0:180:6369:-573.301,-54.1854,0	1/1:179:1,178:1:36:178:6299:-563.407,-50.2861,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:90:0,90:0:0:90:3198:-288.044,-27.0927,0	0/1:82:39,43:39:1396:43:1534:-113.668,0,-101.255	0/1:41:26,15:26:924:15:536:-36.2326,0,-71.1354	0/1:167:92,75:92:3264:75:2676:-190.814,0,-243.708	1/1:62:0,62:0:0:62:2199:-198.175,-18.6639,0	1/1:144:0,144:0:0:144:5100:-459.146,-43.3483,0	1/1:92:1,91:1:21:91:3235:-289.273,-25.5948,0	0/1:125:80,45:80:2848:45:1595:-106.211,0,-218.93	1/1:45:2,43:2:68:43:1530:-131.534,-7.08864,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:104:68,36:68:2417:36:1273:-83.5512,0,-186.478	0/1:105:59,46:59:2093:46:1623:-114.75,0,-157.03	1/1:208:0,208:0:0:208:7403:-666.319,-62.6142,0	1/1:84:0,84:0:0:84:2978:-268.25,-25.2865,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:48:26,22:26:924:22:775:-55.6217,0,-69.0282	0/1:121:56,65:56:2012:65:2312:-171.914,0,-144.928	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:61:0,61:0:0:61:2163:-194.937,-18.3628,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:33:0,33:0:0:33:1166:-105.247,-9.93399,0	0/1:84:49,35:49:1745:35:1203:-83.28,0,-132.046	0/1:34:22,12:22:773:12:428:-28.6238,0,-59.6545	1/1:121:0,121:0:0:121:4331:-389.965,-36.4246,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0
chr04	31018418	.	T	C	118399	PASS	AB=0.43613;ABP=151.689;AC=142;AF=0.755319;AN=188;AO=5852;CIGAR=1X;DP=8234;DPB=8234;DPRA=0;EPP=12710.5;EPPR=5168.94;GTI=3;LEN=1;MEANALT=1.02128;MQM=47.0391;MQMR=59.7533;NS=94;NUMALT=1;ODDS=0.537133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207835;QR=84513;RO=2379;RPL=0;RPP=12710.5;RPPR=5160.26;RPR=5852;RUN=1;SAF=0;SAP=12710.5;SAR=5852;SRF=1;SRP=5160.26;SRR=2378;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:30,14:30:1064:14:504:-31.9072,0,-82.81	1/1:150:1,149:1:32:149:5286:-469.667,-41.9556,0	1/1:58:1,57:1:36:57:2014:-176.675,-13.8705,0	1/1:219:1,218:1:36:218:7710:-682.605,-62.3273,0	0/1:75:49,26:49:1740:26:932:-61.0378,0,-134.293	0/1:91:55,36:55:1935:36:1258:-85.2217,0,-147.008	0/1:181:99,82:99:3504:82:2899:-203.606,0,-260.598	1/1:62:0,62:0:0:62:2190:-196.069,-18.6639,0	1/1:81:0,81:0:0:81:2872:-256.08,-24.3834,0	1/1:90:0,90:0:0:90:3195:-284.305,-27.0927,0	0/1:28:19,9:19:684:9:324:-20.5329,0,-53.4591	0/1:53:22,31:22:780:31:1100:-82.8553,0,-54.5488	1/1:46:0,46:0:0:46:1648:-147.299,-13.8474,0	1/1:43:0,43:0:0:43:1540:-137.299,-12.9443,0	1/1:54:0,54:0:0:54:1911:-170.182,-16.2556,0	0/1:45:19,26:19:675:26:932:-69.7709,0,-47.5306	0/1:42:23,19:23:824:19:675:-48.1179,0,-61.8237	1/1:37:0,37:0:0:37:1303:-116.935,-11.1381,0	0/1:23:11,12:11:392:12:428:-31.733,0,-28.6964	0/1:189:102,86:102:3612:86:3038:-211.734,0,-268.336	0/1:135:71,64:71:2523:64:2252:-160.448,0,-186.651	0/1:168:125,43:125:4453:43:1540:-86.8016,0,-350.365	1/1:114:0,114:0:0:114:4063:-361.714,-34.3174,0	1/1:133:6,127:6:212:127:4523:-385.106,-20.6122,0	0/1:87:52,35:52:1829:35:1256:-85.7931,0,-138.57	1/1:235:0,235:0:0:235:8375:-743.331,-70.7421,0	0/1:182:96,86:96:3428:86:3046:-217.161,0,-253.929	1/1:22:0,22:0:0:22:769:-69.0875,-6.62266,0	1/1:200:0,200:0:0:200:7120:-631.823,-60.206,0	0/1:137:64,73:64:2274:73:2563:-186.606,0,-163.67	0/1:134:82,52:82:2900:52:1860:-125.395,0,-220.89	0/1:4:1,3:1:36:3:108:-8.80647,0,-2.39415	0/1:14:8,6:8:284:6:203:-14.2855,0,-21.6889	1/1:5:0,5:0:0:5:180:-16.4623,-1.50515,0	0/1:7:6,1:6:212:1:36:-1.47156,0,-17.3176	1/1:5:0,5:0:0:5:180:-16.1563,-1.50515,0	0/1:161:84,77:84:2971:77:2741:-195.384,0,-219.153	0/1:194:115,79:115:4085:79:2785:-189.411,0,-309.424	1/1:43:0,43:0:0:43:1536:-137.715,-12.9443,0	1/1:4:0,4:0:0:4:136:-12.5159,-1.20412,0	1/1:142:1,141:1:36:141:5030:-442.41,-39.148,0	0/1:22:11,11:11:396:11:396:-29.1165,0,-29.3555	0/1:183:120,63:120:4284:63:2252:-145.257,0,-330.612	0/1:52:25,27:25:900:27:955:-69.8603,0,-65.6225	1/1:31:0,31:0:0:31:1069:-95.5408,-9.33193,0	1/1:107:0,107:0:0:107:3788:-337.533,-32.2102,0	1/1:64:0,64:0:0:64:2266:-200.811,-19.2659,0	0/1:165:108,57:108:3793:57:2013:-129.328,0,-291.897	0/1:150:96,54:96:3448:54:1940:-126.981,0,-265.373	0/1:91:47,44:47:1664:44:1545:-109.192,0,-122.64	0/1:235:149,86:149:5267:86:3045:-200.996,0,-403.406	0/1:9:3,6:3:108:6:216:-16.9082,0,-7.3659	1/1:128:0,128:0:0:128:4545:-404.392,-38.5318,0	0/1:78:53,25:53:1904:25:896:-56.2917,0,-148.154	0/1:6:4,2:4:144:2:72:-4.42536,0,-11.5074	1/1:111:0,109:0:0:109:3883:-345.128,-32.8123,0	0/1:72:37,35:37:1316:35:1240:-88.0183,0,-97.05	1/1:2:0,2:0:0:2:68:-6.41563,-0.60206,0	0/1:13:3,10:3:100:10:338:-26.5452,0,-5.41705	0/1:110:68,42:68:2428:42:1508:-101.374,0,-185.562	1/1:110:0,110:0:0:110:3890:-345.411,-33.1133,0	1/1:2:0,2:0:0:2:72:-6.77694,-0.60206,0	1/1:163:0,163:0:0:163:5779:-513.813,-49.0679,0	0/1:216:122,94:122:4334:94:3334:-232.433,0,-325.198	1/1:66:0,66:0:0:66:2356:-210.133,-19.868,0	1/1:40:0,40:0:0:40:1424:-126.703,-12.0412,0	1/1:136:1,135:1:36:135:4820:-424.925,-37.3418,0	1/1:162:2,160:2:68:160:5688:-496.607,-42.3092,0	1/1:11:0,11:0:0:11:392:-34.79,-3.31133,0	1/1:90:1,89:1:36:89:3171:-279.733,-23.5035,0	0/1:66:41,25:41:1464:25:896:-60.3982,0,-112.188	0/1:12:5,7:5:176:7:248:-18.8675,0,-12.5693	0/1:155:100,55:100:3548:55:1971:-129.722,0,-272.845	1/1:62:0,62:0:0:62:2192:-195.585,-18.6639,0	1/1:154:0,154:0:0:154:5447:-485.114,-46.3586,0	1/1:102:0,102:0:0:102:3643:-323.212,-30.7051,0	0/1:135:40,95:40:1431:95:3395:-262.31,0,-88.4478	1/1:61:0,61:0:0:61:2165:-193.525,-18.3628,0	0/1:5:1,4:1:36:4:144:-11.7083,0,-2.09312	0/1:71:43,28:43:1536:28:1008:-68.739,0,-117.12	0/1:93:38,55:38:1356:55:1949:-146.524,0,-94.3447	1/1:211:0,211:0:0:211:7525:-668.531,-63.5173,0	1/1:90:0,90:0:0:90:3183:-282.215,-27.0927,0	1/1:36:0,36:0:0:36:1280:-114.548,-10.8371,0	0/1:59:23,36:23:807:36:1287:-96.3532,0,-55.1837	0/1:110:51,59:51:1796:59:2107:-154.977,0,-128.808	1/1:39:0,39:0:0:39:1383:-123.475,-11.7402,0	1/1:53:0,53:0:0:53:1881:-168.38,-15.9546,0	1/1:48:0,48:0:0:48:1698:-151.539,-14.4494,0	1/1:29:0,29:0:0:29:1044:-93.624,-8.72987,0	0/1:54:17,37:17:612:37:1315:-101.257,0,-39.1578	0/1:40:27,13:27:968:13:459:-29.2625,0,-75.3938	1/1:113:0,113:0:0:113:3982:-352.233,-34.0164,0	1/1:74:0,74:0:0:74:2611:-231.705,-22.2762,0
chr04	31018424	.	A	G	39958.8	PASS	AB=0.560019;ABP=134.643;AC=46;AF=0.244681;AN=188;AO=2370;CIGAR=1X;DP=8273;DPB=8273;DPRA=1.19232;EPP=5149.4;EPPR=12821.2;GTI=3;LEN=1;MEANALT=1;MQM=59.7451;MQMR=47.0486;NS=94;NUMALT=1;ODDS=0.201584;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83365;QR=210261;RO=5903;RPL=1;RPP=5140.72;RPPR=12821.2;RPR=2369;RUN=1;SAF=1;SAP=5140.72;SAR=2369;SRF=0;SRP=12821.2;SRR=5903;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:14,30:14:495:30:1063:-82.7192,0,-31.1075	0/0:154:154,0:154:5426:0:0:0,-46.3586,-485.041	0/0:59:58,1:58:2070:1:27:0,-15.0621,-182.464	0/0:221:221,0:221:7858:0:0:0,-66.5276,-699.317	0/1:75:26,49:26:923:49:1742:-134.471,0,-60.2453	0/1:92:37,55:37:1324:55:1929:-146.171,0,-90.6179	0/1:186:84,102:84:2998:102:3597:-267.837,0,-210.643	0/0:64:64,0:64:2260:0:0:0,-19.2659,-202.31	0/0:82:82,0:82:2918:0:0:0,-24.6845,-259.618	0/0:90:90,0:90:3211:0:0:0,-27.0927,-285.763	0/1:27:8,19:8:284:19:659:-51.5021,0,-17.5689	0/1:53:31,22:31:1108:22:757:-52.4666,0,-83.555	0/0:47:47,0:47:1688:0:0:0,-14.1484,-150.87	0/0:45:45,0:45:1595:0:0:0,-13.5463,-142.52	0/0:53:53,0:53:1900:0:0:0,-15.9546,-169.292	0/1:47:28,19:28:1000:19:668:-46.2973,0,-75.0215	0/1:42:20,22:20:711:22:755:-55.6129,0,-51.2503	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.129	0/1:24:12,12:12:428:12:416:-30.5469,0,-31.432	0/1:188:89,99:89:3180:99:3509:-259.423,0,-224.426	0/1:131:61,70:61:2183:70:2444:-180.747,0,-155.414	0/1:166:42,124:42:1504:124:4400:-346.198,0,-84.5356	0/0:114:114,0:114:4065:0:0:0,-34.3174,-361.768	0/0:132:125,7:125:4467:7:248:0,-17.0718,-376.813	0/1:83:32,51:32:1126:51:1793:-136.654,0,-75.4178	0/0:237:237,0:237:8486:0:0:0,-71.3441,-753.266	0/1:184:88,96:88:3116:96:3408:-251.526,0,-222.436	0/0:22:22,0:22:788:0:0:0,-6.62266,-70.7686	0/0:202:202,0:202:7191:0:0:0,-60.8081,-637.917	0/1:140:75,65:75:2676:65:2302:-165.287,0,-195.497	0/1:136:54,82:54:1936:82:2899:-220.196,0,-130.413	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.80647	0/1:13:5,8:5:171:8:284:-21.99,0,-11.7183	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4623	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.47156	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.1563	0/1:158:75,83:75:2650:83:2923:-215.738,0,-187.92	0/1:198:83,115:83:2944:115:4071:-306.947,0,-202.218	0/0:42:42,0:42:1500:0:0:0,-12.6433,-134.491	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4427	0/0:146:145,1:145:5147:1:36:0,-40.3521,-453.14	0/1:21:10,11:10:360:11:383:-28.477,0,-26.2015	0/1:184:64,120:64:2292:120:4187:-321.611,0,-148.411	0/1:49:26,23:26:923:23:807:-58.1801,0,-67.8736	0/0:31:31,0:31:1104:0:0:0,-9.33193,-98.3921	0/0:108:108,0:108:3875:0:0:0,-32.5112,-344.475	0/0:61:61,0:61:2170:0:0:0,-18.3628,-192.041	0/1:166:59,107:59:2108:107:3797:-291.949,0,-137.439	0/1:154:56,98:56:2004:98:3463:-265.522,0,-131.512	0/1:87:41,46:41:1463:46:1623:-120.166,0,-103.433	0/1:235:90,145:90:3193:145:5125:-390.626,0,-214.204	0/1:9:6,3:6:216:3:108:-7.3659,0,-16.9082	0/0:131:131,0:131:4671:0:0:0,-39.4349,-415.571	0/1:77:24,53:24:851:53:1861:-144.582,0,-52.7746	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.05739	0/0:109:109,0:109:3874:0:0:0,-32.8123,-344.321	0/1:72:33,39:33:1168:39:1396:-104.245,0,-82.5395	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.77694	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.1995	0/1:108:41,67:41:1468:67:2376:-181.571,0,-98.5591	0/0:108:108,0:108:3855:0:0:0,-32.5112,-341.982	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.77694	0/0:166:166,0:166:5956:0:0:0,-49.971,-529.059	0/1:220:95,125:95:3388:125:4333:-323.909,0,-236.009	0/0:67:67,0:67:2386:0:0:0,-20.169,-212.661	0/0:43:43,0:43:1548:0:0:0,-12.9443,-137.706	0/0:135:134,1:134:4778:1:36:0,-37.0408,-421.972	0/0:162:159,3:159:5663:3:108:0,-39.075,-491.398	0/0:11:11,0:11:392:0:0:0,-3.31133,-34.79	0/0:91:90,1:90:3216:1:36:0,-23.8045,-283.643	0/1:67:26,41:26:927:41:1449:-110.535,0,-62.8815	0/1:12:7,5:7:252:5:165:-11.5588,0,-19.2152	0/1:158:58,100:58:2060:100:3469:-264.846,0,-136.647	0/0:62:62,0:62:2185:0:0:0,-18.6639,-194.652	0/0:154:154,0:154:5468:0:0:0,-46.3586,-486.795	0/0:101:101,0:101:3619:0:0:0,-30.404,-320.885	0/1:135:96,39:96:3431:39:1360:-82.0565,0,-265.225	0/0:60:60,0:60:2141:0:0:0,-18.0618,-191.352	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.7083	0/1:73:29,44:29:1028:44:1560:-118.677,0,-69.9647	0/1:96:57,39:57:2020:39:1374:-95.0582,0,-151.575	0/0:209:209,0:209:7449:0:0:0,-62.9153,-661.253	0/0:92:92,0:92:3278:0:0:0,-27.6948,-290.603	0/0:38:38,0:38:1356:0:0:0,-11.4391,-120.97	0/1:61:39,22:39:1354:22:780:-52.1532,0,-101.793	0/1:110:61,49:61:2167:49:1664:-116.925,0,-160.352	0/0:38:38,0:38:1351:0:0:0,-11.4391,-120.435	0/0:57:57,0:57:2023:0:0:0,-17.1587,-180.817	0/0:50:50,0:50:1762:0:0:0,-15.0515,-157.251	0/0:30:30,0:30:1064:0:0:0,-9.0309,-95.4518	0/1:51:36,15:36:1283:15:514:-31.2313,0,-99.4404	0/1:40:13,27:13:460:27:925:-71.5171,0,-29.3628	0/0:113:113,0:113:4023:0:0:0,-34.0164,-356.012	0/0:73:73,0:73:2583:0:0:0,-21.9752,-228.843
chr04	31018435	.	CAATG	CAAATG,CAATA	166396	PASS	AB=0.427126,0.568297;ABP=194.485,171.188;AC=142,46;AF=0.755319,0.244681;AN=188;AO=5645,2371;CIGAR=1M1I4M,4M1X;DP=8056;DPB=9187.8;DPRA=0,1.1911;EPP=12261,5151.57;EPPR=5.18177;GTI=4;LEN=1,1;MEANALT=1.92553,2.37255;MQM=47.0824,59.7832;MQMR=60;NS=94;NUMALT=2;ODDS=0.836242;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=197441,84797;QR=33;RO=1;RPL=0,0;RPP=12261,5151.57;RPPR=5.18177;RPR=5645,2371;RUN=1,1;SAF=0,0;SAP=12261,5151.57;SAR=5645,2371;SRF=0;SRP=5.18177;SRR=1;TYPE=ins,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,12,29:0:0:12,29:424,1030:-118.368,-84.0234,-80.411,-34.4424,0,-25.7126	1/1:146:0,145,0:0:0:145,0:5112,0:-456.982,-43.6494,0,-456.982,-43.6494,-456.982	1/1:55:0,54,1:0:0:54,1:1914,36:-170.926,-16.2556,0,-167.997,-12.9674,-167.696	1/1:207:0,207,0:0:0:207,0:7280,0:-649.362,-62.3132,0,-649.362,-62.3132,-649.362	1/2:73:0,23,49:0:0:23,49:811,1755:-208.661,-143.111,-136.187,-65.5454,0,-50.7949	1/2:90:0,36,53:0:0:36,53:1255,1898:-255.894,-154.832,-143.995,-101.111,0,-85.1567	1/2:180:0,81,98:0:0:81,98:2812,3520:-513.26,-287.241,-262.858,-226.103,0,-196.602	1/1:62:0,62,0:0:0:62,0:2165,0:-193.886,-18.6639,0,-193.886,-18.6639,-193.886	1/1:82:0,81,0:0:0:81,0:2781,0:-247.901,-24.3834,0,-247.901,-24.3834,-247.901	1/1:91:0,90,0:0:0:90,0:3104,0:-276.579,-27.0927,0,-276.579,-27.0927,-276.579	1/2:28:0,8,19:0:0:8,19:276,684:-78.0956,-55.8515,-53.4433,-22.2731,0,-16.5536	1/2:49:0,28,21:0:0:28,21:984,740:-140.255,-60.5917,-52.1628,-80.014,0,-73.6924	1/1:46:0,46,0:0:0:46,0:1616,0:-144.55,-13.8474,0,-144.55,-13.8474,-144.55	1/1:44:0,44,0:0:0:44,0:1500,0:-134.074,-13.2453,0,-134.074,-13.2453,-134.074	1/1:54:0,54,0:0:0:54,0:1868,0:-166.641,-16.2556,0,-166.641,-16.2556,-166.641	1/2:44:0,25,19:0:0:25,19:879,676:-126.3,-55.4484,-47.9227,-71.2041,0,-65.4846	1/2:41:0,18,23:0:0:18,23:617,820:-117.007,-67.1825,-61.7639,-50.172,0,-43.2483	1/1:35:0,35,0:0:0:35,0:1198,0:-107.523,-10.5361,0,-107.523,-10.5361,-107.523	1/2:23:0,12,11:0:0:12,11:428,396:-67.3584,-32.6714,-29.0591,-35.0444,0,-31.733	1/2:185:0,82,102:0:0:82,102:2892,3636:-528.32,-296.418,-271.733,-231.934,0,-201.229	1/2:133:0,62,71:0:0:62,71:2157,2552:-382.202,-208.52,-189.856,-174.033,0,-152.66	1/2:167:0,40,127:0:0:40,127:1402,4568:-485.848,-373.029,-360.988,-113.169,0,-74.9379	1/1:112:0,110,0:0:0:110,0:3857,0:-343.886,-33.1133,0,-343.886,-33.1133,-343.886	1/1:126:0,118,7:0:0:118,7:4082,248:-364.892,-35.5215,0,-344.689,-15.3232,-342.581	1/2:86:0,34,52:0:0:34,52:1181,1850:-245.943,-151.106,-140.871,-95.1848,0,-79.5312	1/1:224:0,222,0:0:0:222,0:7835,0:-697.199,-66.8287,0,-697.199,-66.8287,-697.199	1/2:182:0,84,98:0:0:84,98:2941,3520:-524.337,-287.489,-262.203,-237.2,0,-207.699	1/1:20:0,20,0:0:0:20,0:692,0:-62.2038,-6.0206,0,-62.2038,-6.0206,-62.2038	1/1:194:0,193,0:0:0:193,0:6773,0:-601.651,-58.0988,0,-601.651,-58.0988,-601.651	1/2:139:0,74,65:0:0:74,65:2572,2288:-392.879,-186.601,-164.324,-206.626,0,-187.059	1/2:135:0,53,81:0:0:53,81:1861,2916:-387.262,-237.922,-221.967,-149.332,0,-124.949	1/2:3:0,2,1:0:0:2,1:72,32:-8.75335,-2.89828,-2.29622,-6.18746,0,-5.88643	1/2:14:0,6,8:0:0:6,8:197,288:-39.6645,-23.8592,-22.053,-16.1461,0,-13.7379	1/1:5:0,5,0:0:0:5,0:180,0:-16.4623,-1.50515,0,-16.4623,-1.50515,-16.4623	1/2:7:0,1,6:0:0:1,6:36,216:-20.9039,-17.9843,-17.6833,-3.27774,0,-1.47156	1/1:6:0,6,0:0:0:6,0:215,0:-19.3351,-1.80618,0,-19.3351,-1.80618,-19.3351	1/2:157:0,74,83:0:0:74,83:2565,2962:-447.737,-241.823,-219.547,-206.263,0,-181.278	1/2:196:0,80,115:0:0:80,115:2843,4109:-563.761,-335.084,-311.001,-228.759,0,-194.141	1/1:43:0,43,0:0:0:43,0:1494,0:-133.99,-12.9443,0,-133.99,-12.9443,-133.99	1/1:4:0,4,0:0:0:4,0:140,0:-12.8713,-1.20412,0,-12.8713,-1.20412,-12.8713	1/1:136:0,135,1:0:0:135,1:4695,36:-418.601,-40.6391,0,-415.663,-37.3418,-415.362	1/2:22:0,11,11:0:0:11,11:370,396:-62.4518,-32.6668,-29.3555,-30.1322,0,-26.8208	1/2:183:0,63,118:0:0:63,118:2230,4194:-521.29,-341.823,-322.858,-179.547,0,-144.025	1/2:51:0,26,25:0:0:26,25:906,886:-145.49,-72.5273,-64.7005,-73.3128,0,-65.7871	1/1:24:0,24,0:0:0:24,0:797,0:-71.5426,-7.22472,0,-71.5426,-7.22472,-71.5426	1/1:103:0,103,0:0:0:103,0:3607,0:-321.317,-31.0061,0,-321.317,-31.0061,-321.317	1/1:62:0,62,0:0:0:62,0:2179,0:-193.27,-18.6639,0,-193.27,-18.6639,-193.27	1/2:162:0,53,108:0:0:53,108:1831,3876:-463.077,-316.215,-300.26,-146.909,0,-114.398	1/2:154:0,55,99:0:0:55,99:1947,3552:-446.042,-290.081,-273.524,-156.313,0,-126.511	1/2:86:0,41,45:0:0:41,45:1426,1616:-246.157,-132.181,-119.839,-114.326,0,-100.78	1/2:227:1,80,145:1:33:80,145:2815,5176:-645.837,-419.293,-397.879,-224.184,0,-183.203	1/2:9:0,6,3:0:0:6,3:212,108:-26.2781,-9.17208,-7.3659,-17.4627,0,-16.5596	1/1:125:0,125,0:0:0:125,0:4388,0:-391.533,-37.6288,0,-391.533,-37.6288,-391.533	1/2:76:0,22,52:0:0:22,52:784,1859:-214.908,-151.593,-144.97,-63.3285,0,-47.6749	1/2:6:0,2,4:0:0:2,4:67,144:-17.2339,-12.1095,-11.5074,-5.45695,0,-4.25283	1/1:106:0,104,0:0:0:104,0:3628,0:-322.968,-31.3071,0,-322.968,-31.3071,-322.968	1/2:70:0,31,39:0:0:31,39:1088,1388:-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chr04	31018468	.	GGGA	AGGG,AGGA	174474	PASS	AB=0.443136,0.551448;ABP=122.29,100.652;AC=142,46;AF=0.755319,0.244681;AN=188;AO=6028,2352;CIGAR=1X2M1X,1X3M;DP=8428;DPB=8429;DPRA=0,1.15949;EPP=13092.6,5110.31;EPPR=9.52472;GTI=2;LEN=4,1;MEANALT=1.97872,2.5102;MQM=46.9952,59.7857;MQMR=60;NS=94;NUMALT=2;ODDS=0.983148;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=36;PRO=1;QA=211492,84017;QR=106;RO=3;RPL=6028,2352;RPP=13092.6,5110.31;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13092.6,5110.31;SAR=6028,2352;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,14,29:0:0:14,29:482,1031:-122.999,-84.3564,-80.142,-38.9879,0,-30.258	1/1:155:0,152,0:0:0:152,0:5334,0:-476.627,-45.7566,0,-476.627,-45.7566,-476.627	1/1:61:0,61,0:0:0:61,0:2142,0:-191.523,-18.3628,0,-191.523,-18.3628,-191.523	1/1:226:0,226,0:0:0:226,0:7964,0:-708.763,-68.0328,0,-708.763,-68.0328,-708.763	1/2:75:2,26,47:2:70:26,47:909,1665:-202.749,-129.928,-127.796,-67.7278,0,-59.275	1/2:91:0,34,54:0:0:34,54:1201,1924:-253.715,-156.832,-146.597,-96.9015,0,-80.6459	1/2:186:0,86,100:0:0:86,100:3013,3561:-532.477,-290.323,-264.435,-242.504,0,-212.401	1/1:66:0,66,0:0:0:66,0:2309,0:-206.658,-19.868,0,-206.658,-19.868,-206.658	1/1:86:0,86,0:0:0:86,0:2981,0:-265.788,-25.8886,0,-265.788,-25.8886,-265.788	1/1:95:0,95,0:0:0:95,0:3307,0:-294.645,-28.5979,0,-294.645,-28.5979,-294.645	1/2:28:0,9,19:0:0:9,19:309,680:-80.4397,-55.8072,-53.098,-24.9765,0,-19.257	1/2:54:0,31,23:0:0:31,23:1086,807:-153.877,-66.0058,-56.6739,-88.2205,0,-81.2968	1/1:47:0,47,0:0:0:47,0:1671,0:-149.385,-14.1484,0,-149.385,-14.1484,-149.385	1/1:47:0,47,0:0:0:47,0:1630,0:-145.48,-14.1484,0,-145.48,-14.1484,-145.48	1/1:54:0,54,0:0:0:54,0:1920,0:-171.122,-16.2556,0,-171.122,-16.2556,-171.122	1/2:46:0,27,19:0:0:27,19:953,684:-132.895,-56.1708,-48.0429,-77.0797,0,-71.3602	1/2:43:0,20,22:0:0:20,22:692,788:-120.31,-64.3784,-58.3578,-56.0444,0,-49.4218	1/1:38:0,38,0:0:0:38,0:1323,0:-118.716,-11.4391,0,-118.716,-11.4391,-118.716	1/2:24:0,12,12:0:0:12,12:431,432:-70.5596,-35.6088,-31.9965,-35.3093,0,-31.6969	1/2:189:0,88,101:0:0:88,101:3076,3593:-539.102,-293.17,-266.68,-246.28,0,-215.876	1/2:133:0,63,69:0:0:63,69:2217,2480:-381.247,-202.315,-183.35,-178.951,0,-158.179	1/2:169:0,43,126:0:0:43,126:1509,4516:-490.062,-368.656,-355.711,-121.756,0,-83.8259	1/1:120:0,118,0:0:0:118,0:4124,0:-366.754,-35.5215,0,-366.754,-35.5215,-366.754	1/1:139:0,131,7:0:0:131,7:4574,252:-408.723,-39.4349,0,-388.16,-18.8201,-386.053	1/2:88:0,36,52:0:0:36,52:1254,1864:-253.175,-152.256,-141.419,-101.269,0,-85.6154	1/1:244:0,242,0:0:0:242,0:8515,0:-756.227,-72.8493,0,-756.227,-72.8493,-756.227	1/2:185:0,90,95:0:0:90,95:3137,3398:-529.725,-277.424,-250.331,-252.652,0,-224.054	1/1:22:0,22,0:0:0:22,0:769,0:-69.101,-6.62266,0,-69.101,-6.62266,-69.101	1/1:205:0,204,0:0:0:204,0:7217,0:-640.536,-61.4101,0,-640.536,-61.4101,-640.536	1/2:144:0,79,64:0:0:79,64:2747,2292:-407.266,-186.981,-163.199,-220.351,0,-201.085	1/2:140:0,55,84:0:0:55,84:1942,2997:-399.577,-244.364,-227.807,-155.262,0,-129.976	1/2:4:0,3,1:0:0:3,1:100,36:-11.3261,-3.29724,-2.39415,-8.3816,0,-8.08057	1/2:13:0,5,8:0:0:5,8:166,288:-37.1859,-23.8592,-22.354,-13.6681,0,-11.2599	1/1:5:0,5,0:0:0:5,0:180,0:-16.4623,-1.50515,0,-16.4623,-1.50515,-16.4623	1/2:8:0,2,6:0:0:2,6:56,216:-22.3958,-17.9843,-17.3823,-4.71115,0,-2.90497	1/1:6:0,6,0:0:0:6,0:207,0:-18.5767,-1.80618,0,-18.5767,-1.80618,-18.5767	1/2:160:0,79,81:0:0:79,81:2781,2899:-459.672,-236.34,-212.558,-223.267,0,-198.883	1/2:196:0,82,114:0:0:82,114:2894,4072:-564.635,-332.27,-307.586,-232.657,0,-198.34	1/1:42:0,41,0:0:0:41,0:1443,0:-129.153,-12.3422,0,-129.153,-12.3422,-129.153	1/1:5:0,5,0:0:0:5,0:173,0:-15.8182,-1.50515,0,-15.8182,-1.50515,-15.8182	1/1:148:0,145,1:0:0:145,1:5094,36:-452.842,-43.6494,0,-449.904,-40.6916,-449.603	1/2:22:0,11,10:0:0:11,10:394,360:-61.2727,-29.3746,-26.0633,-31.8967,0,-28.8864	1/2:183:0,66,116:0:0:66,116:2320,4156:-525.234,-338.885,-319.017,-186.341,0,-151.422	1/2:52:0,27,25:0:0:27,25:935,891:-148.315,-72.9771,-64.8493,-75.6878,0,-68.1621	1/1:32:0,32,0:0:0:32,0:1042,0:-93.2525,-9.63296,0,-93.2525,-9.63296,-93.2525	1/1:111:0,110,0:0:0:110,0:3871,0:-344.917,-33.1133,0,-344.917,-33.1133,-344.917	1/1:66:0,66,0:0:0:66,0:2311,0:-204.896,-19.868,0,-204.896,-19.868,-204.896	1/2:166:0,58,107:0:0:58,107:2036,3801:-473.177,-309.82,-292.36,-163.455,0,-131.245	1/2:158:0,57,100:0:0:57,100:1983,3584:-451.117,-292.324,-275.165,-158.806,0,-128.703	1/2:89:0,42,46:0:0:42,46:1497,1643:-253.514,-133.969,-121.326,-119.563,0,-105.715	1/2:241:1,91,148:1:36:91,148:3215,5292:-687.499,-428.606,-404.149,-256.304,0,-214.689	1/2:9:0,6,3:0:0:6,3:203,108:-25.491,-9.17208,-7.3659,-16.6708,0,-15.7677	1/1:132:0,132,0:0:0:132,0:4682,0:-416.582,-39.736,0,-416.582,-39.736,-416.582	1/2:78:0,25,53:0:0:25,53:884,1904:-226.658,-155.68,-148.154,-71.3302,0,-55.3756	1/2:6:0,2,4:0:0:2,4:72,144:-17.4004,-12.1095,-11.5074,-5.62948,0,-4.42536	1/1:115:0,115,0:0:0:115,0:3990,0:-354.887,-34.6185,0,-354.887,-34.6185,-354.887	1/2:72:0,35,36:0:0:35,36: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chr04	31064962	.	G	C	110699	PASS	AB=0.508534;ABP=5.01157;AC=142;AF=0.755319;AN=188;AO=5224;CIGAR=1X;DP=6789;DPB=6789;DPRA=0;EPP=11346.8;EPPR=3381.82;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.9816;MQMR=59.9698;NS=94;NUMALT=1;ODDS=1.07836;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186619;QR=55632;RO=1556;RPL=5224;RPP=11346.8;RPPR=3381.82;RPR=0;RUN=1;SAF=0;SAP=11346.8;SAR=5224;SRF=0;SRP=3381.82;SRR=1556;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:22,7:22:784:7:252:-14.2991,0,-62.154	1/1:101:0,101:0:0:101:3583:-322.674,-30.404,0	1/1:208:0,207:0:0:207:7398:-665.505,-62.3132,0	1/1:84:0,84:0:0:84:3001:-270.292,-25.2865,0	0/1:34:17,17:17:612:17:612:-45.1784,0,-45.1784	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	0/1:103:68,35:68:2440:35:1240:-80.8961,0,-188.849	1/1:98:0,96:0:0:96:3421:-307.743,-28.8989,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:83:0,83:0:0:83:2965:-267.083,-24.9855,0	0/1:63:30,33:30:1080:33:1184:-87.9034,0,-78.5484	0/1:82:49,33:49:1738:33:1169:-80.8308,0,-132.019	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:56:0,55:0:0:55:1952:-175.594,-16.5567,0	1/1:82:0,82:0:0:82:2937:-264.562,-24.6845,0	0/1:35:15,20:15:532:20:701:-52.8757,0,-37.677	0/1:64:30,34:30:1080:34:1220:-90.8409,0,-78.2392	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:53:23,30:23:828:30:1072:-80.8379,0,-58.8895	0/1:145:81,64:81:2908:64:2269:-160.822,0,-218.078	0/1:107:53,54:53:1864:54:1925:-141.315,0,-135.829	0/1:68:34,34:34:1212:34:1220:-89.6368,0,-88.9163	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	0/1:100:17,83:17:612:83:2972:-237.61,0,-25.3104	0/1:43:16,27:16:572:27:953:-73.139,0,-38.8691	1/1:198:0,196:0:0:196:7021:-631.59,-59.0019,0	0/1:151:81,70:81:2896:70:2516:-181.236,0,-215.421	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:175:0,175:0:0:175:6284:-565.651,-52.6803,0	0/1:30:11,19:11:396:19:680:-52.4983,0,-26.9518	0/1:62:33,29:33:1168:29:1044:-75.6109,0,-86.7634	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:20:6,14:6:216:14:500:-39.3156,0,-13.7699	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:156:81,74:81:2899:74:2652:-191.907,0,-214.126	0/1:147:63,83:63:2260:83:2968:-223.043,0,-159.352	1/1:97:0,97:0:0:97:3461:-311.701,-29.1999,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:45:0,45:0:0:45:1597:-144.019,-13.5464,0	0/1:47:20,27:20:720:27:972:-73.6495,0,-50.9804	0/1:119:50,69:50:1788:69:2450:-184.93,0,-125.38	0/1:87:51,36:51:1815:36:1296:-90.7543,0,-137.441	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:51:0,51:0:0:51:1818:-163.901,-15.3525,0	1/1:94:0,94:0:0:94:3357:-302.346,-28.2968,0	0/1:118:52,66:52:1856:66:2326:-174.076,0,-131.798	0/1:82:40,42:40:1436:42:1512:-111.69,0,-104.825	0/1:76:32,44:32:1152:44:1549:-116.821,0,-81.1119	0/1:120:71,49:71:2548:49:1760:-122.56,0,-193.447	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	0/1:20:10,10:10:356:10:356:-26.3606,0,-26.3606	0/1:14:5,9:5:176:9:320:-24.9279,0,-11.9706	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:26:10,16:10:356:16:561:-42.9903,0,-24.5545	0/1:48:27,21:27:968:21:756:-53.7877,0,-72.9879	1/1:86:0,86:0:0:86:3077:-277.139,-25.8886,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:123:0,123:0:0:123:4363:-392.843,-37.0267,0	0/1:126:60,66:60:2148:66:2334:-172.387,0,-155.658	1/1:34:1,33:1:36:33:1180:-102.909,-6.63675,0	1/1:56:0,56:0:0:56:1985:-178.923,-16.8577,0	1/1:129:1,128:1:36:128:4565:-407.418,-35.2346,0	1/1:86:0,86:0:0:86:3057:-275.359,-25.8886,0	1/1:31:0,31:0:0:31:1093:-98.6777,-9.33193,0	1/1:69:1,68:1:36:68:2425:-214.906,-17.1728,0	0/1:46:27,19:27:972:19:684:-48.0429,0,-73.949	0/1:25:6,19:6:216:19:680:-54.0034,0,-12.2648	0/1:50:23,27:23:828:27:968:-72.3859,0,-59.7926	1/1:62:0,61:0:0:61:2180:-196.106,-18.3628,0	1/1:122:0,122:0:0:122:4345:-391.223,-36.7257,0	1/1:122:0,122:0:0:122:4384:-394.732,-36.7257,0	0/1:81:45,36:45:1604:36:1269:-90.1268,0,-120.267	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:81:43,38:43:1540:38:1352:-97.5969,0,-114.51	0/1:84:40,44:40:1440:44:1561:-115.493,0,-104.611	1/1:217:0,217:0:0:217:7773:-699.598,-65.3235,0	1/1:65:0,65:0:0:65:2336:-210.494,-19.567,0	1/1:72:0,72:0:0:72:2572:-231.599,-21.6742,0	0/1:70:34,36:34:1212:36:1296:-95.8718,0,-88.3142	0/1:138:77,61:77:2730:61:2187:-155.553,0,-204.401	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:76:0,76:0:0:76:2708:-243.962,-22.8783,0	1/1:69:0,69:0:0:69:2457:-221.383,-20.7711,0	1/1:64:0,64:0:0:64:2280:-205.46,-19.2659,0	0/1:90:42,48:42:1495:48:1713:-127.361,0,-107.751	0/1:71:39,32:39:1391:32:1152:-82.617,0,-104.115	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:102:0,102:0:0:102:3653:-328.972,-30.7051,0
chr04	31067238	.	A	T	30715.2	PASS	AB=0.520984;ABP=16.2245;AC=48;AF=0.255319;AN=188;AO=1813;CIGAR=1X;DP=7329;DPB=7329;DPRA=0.874484;EPP=3939.89;EPPR=11719.5;GTI=2;LEN=1;MEANALT=1;MQM=59.9884;MQMR=59.9956;NS=94;NUMALT=1;ODDS=0.73478;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64750;QR=197495;RO=5515;RPL=1813;RPP=3939.89;RPPR=11719.5;RPR=0;RUN=1;SAF=0;SAP=3939.89;SAR=1813;SRF=0;SRP=11978.7;SRR=5515;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:20,31:20:707:31:1100:-83.9578,0,-48.602	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:128:128,0:128:4579:0:0:0,-38.5318,-412.275	0/0:99:98,1:98:3499:1:36:0,-26.2037,-311.522	0/1:33:16,17:16:576:17:608:-45.118,0,-42.241	0/1:36:17,19:17:608:19:680:-50.6921,0,-44.2149	0/1:125:70,55:70:2508:55:1972:-140.126,0,-188.343	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:133:133,0:133:4760:0:0:0,-40.037,-428.558	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/1:70:33,37:33:1188:37:1328:-98.7501,0,-86.1541	0/1:116:62,54:62:2224:54:1936:-139.597,0,-165.505	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/1:61:30,31:30:1071:31:1116:-82.3889,0,-78.3388	0/1:33:18,15:18:644:15:540:-39.0025,0,-48.3566	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:57:33,24:33:1180:24:860:-60.5631,0,-89.3493	0/1:81:45,36:45:1605:36:1258:-89.1348,0,-120.355	0/1:243:121,122:121:4336:122:4351:-318.615,0,-317.265	0/1:34:7,27:7:252:27:960:-76.4813,0,-12.7939	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.684	0/0:63:61,2:61:2183:2:72:0,-12.1282,-189.899	0/1:46:22,24:22:788:24:860:-63.8745,0,-57.3974	0/0:175:175,0:175:6266:0:0:0,-52.6802,-564.03	0/1:193:87,106:87:3124:106:3785:-282.744,0,-223.287	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:137:137,0:137:4915:0:0:0,-41.2411,-442.499	0/1:84:38,46:38:1345:46:1641:-122.69,0,-96.0616	0/1:109:57,52:57:2044:52:1849:-133.877,0,-151.42	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:230:95,135:95:3412:135:4806:-363.458,0,-238.056	0/1:39:20,19:20:720:19:680:-49.789,0,-53.3886	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:73:69,4:69:2465:4:144:0,-8.66157,-208.789	0/1:61:27,34:27:972:34:1220:-91.744,0,-69.4351	0/1:117:65,52:65:2332:52:1848:-131.38,0,-174.897	0/1:62:35,27:35:1252:27:972:-69.134,0,-94.3212	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:110:110,0:110:3941:0:0:0,-33.1133,-354.88	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.242	0/1:110:46,64:46:1656:64:2296:-173.788,0,-116.215	0/1:63:25,38:25:887:38:1360:-103.736,0,-61.1832	0/1:72:40,32:40:1417:32:1144:-81.5954,0,-106.151	0/1:107:65,42:65:2324:42:1493:-102.453,0,-177.21	0/1:9:2,7:2:68:7:252:-20.3197,0,-3.74844	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:55:21,34:21:752:34:1216:-93.1899,0,-51.4496	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:105:105,0:105:3761:0:0:0,-31.6081,-338.687	0/1:35:13,22:13:455:22:788:-60.7064,0,-30.7459	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:82:49,33:49:1764:33:1188:-82.5441,0,-134.359	0/0:114:114,0:114:4081:0:0:0,-34.3174,-367.474	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/1:132:47,85:47:1688:85:3017:-232.024,0,-112.471	0/0:42:41,1:41:1464:1:36:0,-9.04498,-128.458	0/0:41:41,0:41:1467:0:0:0,-12.3422,-132.325	0/0:90:90,0:90:3227:0:0:0,-27.0927,-290.651	0/0:123:123,0:123:4396:0:0:0,-37.0267,-395.811	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:63:28,35:28:1004:35:1256:-94.3804,0,-71.711	0/1:21:15,6:15:540:6:212:-13.1032,0,-42.6149	0/1:93:49,44:49:1760:44:1568:-113.416,0,-130.688	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.898	0/0:184:184,0:184:6573:0:0:0,-55.3895,-591.651	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.157	0/1:96:32,64:32:1152:64:2281:-176.651,0,-75.0913	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:59:29,30:29:1044:30:1053:-77.3178,0,-76.514	0/1:84:32,52:32:1144:52:1860:-142.393,0,-77.983	0/0:130:130,0:130:4631:0:0:0,-39.1339,-416.952	0/0:83:83,0:83:2960:0:0:0,-24.9855,-266.631	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/1:60:24,36:24:864:36:1292:-98.522,0,-60.0208	0/1:170:96,74:96:3444:74:2644:-187.032,0,-258.997	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:117:116,0:116:4147:0:0:0,-34.9195,-373.053	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:100:48,52:48:1720:52:1868:-138.295,0,-124.983	0/1:95:33,62:33:1188:62:2228:-172.186,0,-78.6307	0/0:74:73,1:73:2612:1:36:0,-18.6779,-231.728	0/0:166:166,0:166:5954:0:0:0,-49.971,-535.964
chr04	31067248	.	ACC	ACA	29975.4	PASS	AB=0.508777;ABP=5.33549;AC=48;AF=0.255319;AN=188;AO=1782;CIGAR=2M1X;DP=7437;DPB=7437;DPRA=0.88534;EPP=3872.57;EPPR=12156.8;GTI=2;LEN=1;MEANALT=1.20755;MQM=59.9905;MQMR=59.9931;NS=94;NUMALT=1;ODDS=2.17187;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63693;QR=197302;RO=5625;RPL=1782;RPP=3872.57;RPPR=12156.8;RPR=0;RUN=1;SAF=0;SAP=3872.57;SAR=1782;SRF=0;SRP=12217.5;SRR=5625;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:21,31:21:722:31:1097:-83.3845,0,-49.6436	0/0:60:60,0:60:2114:0:0:0,-18.0618,-190.526	0/0:130:129,1:129:4488:1:36:0,-35.5356,-400.494	0/0:101:100,1:100:3457:1:36:0,-26.8058,-307.719	0/1:34:17,17:17:602:17:612:-45.1784,0,-44.2744	0/1:37:18,19:18:628:19:676:-50.0299,0,-45.7064	0/1:125:70,55:70:2428:55:1961:-139.135,0,-181.144	0/0:74:73,0:73:2537:0:0:0,-21.9752,-228.22	0/0:135:133,0:133:4673:0:0:0,-40.037,-420.376	0/0:71:71,0:71:2518:0:0:0,-21.3731,-226.872	0/1:71:34,36:34:1176:36:1292:-95.2296,0,-84.786	0/1:117:62,54:62:2144:54:1936:-139.237,0,-157.945	0/0:92:91,0:91:3232:0:0:0,-27.3937,-290.743	0/0:70:70,0:70:2439:0:0:0,-21.0721,-219.765	0/0:84:83,0:83:2917:0:0:0,-24.9855,-262.405	0/1:61:30,31:30:1033:31:1116:-82.3889,0,-74.9124	0/1:33:18,15:18:632:15:540:-39.0025,0,-47.2726	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/1:57:33,24:33:1152:24:860:-60.5631,0,-86.8245	0/1:81:44,36:44:1516:36:1281:-91.1492,0,-112.286	0/1:248:126,122:126:4362:122:4342:-316.297,0,-318.103	0/1:34:7,27:7:250:27:953:-75.8483,0,-12.6117	0/0:108:108,0:108:3816:0:0:0,-32.5112,-343.638	0/0:66:64,2:64:2257:2:72:0,-13.0313,-196.556	0/1:45:22,23:22:755:23:809:-59.582,0,-54.7179	0/0:178:178,0:178:6308:0:0:0,-53.5833,-567.818	0/1:194:88,105:88:3089:105:3760:-280.14,0,-219.779	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.182	0/0:139:139,0:139:4896:0:0:0,-41.8432,-440.795	0/1:85:39,46:39:1347:46:1641:-122.39,0,-95.9342	0/1:109:58,51:58:2056:51:1820:-131.268,0,-152.499	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:16:11,5:11:386:5:180:-11.7356,0,-30.2591	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:7,3:7:237:3:108:-7.06487,0,-18.6497	0/0:17:17,0:17:577:0:0:0,-5.11751,-52.2496	0/1:231:97,133:97:3429:133:4776:-360.399,0,-239.229	0/1:42:22,20:22:756:20:716:-52.1245,0,-55.7109	0/0:116:115,0:115:4046:0:0:0,-34.6184,-363.971	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:74:70,4:70:2471:4:144:0,-8.9626,-209.329	0/1:61:27,34:27:970:34:1224:-92.1042,0,-69.2549	0/1:117:66,50:66:2306:50:1800:-127.111,0,-172.622	0/1:61:34,27:34:1193:27:957:-68.081,0,-89.3108	0/0:79:78,0:78:2769:0:0:0,-23.4803,-249.091	0/0:111:111,0:111:3849:0:0:0,-33.4143,-346.613	0/0:100:100,0:100:3520:0:0:0,-30.103,-317.012	0/1:107:46,61:46:1634:61:2182:-164.436,0,-115.139	0/1:65:27,36:27:958:36:1265:-94.8263,0,-67.2114	0/1:71:39,31:39:1375:31:1112:-78.9595,0,-102.615	0/1:109:67,42:67:2376:42:1508:-103.201,0,-181.287	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:68:67,0:67:2353:0:0:0,-20.169,-211.667	0/1:55:22,33:22:779:33:1184:-90.3117,0,-53.8758	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:107:107,0:107:3762:0:0:0,-32.2102,-338.782	0/1:36:14,21:14:489:21:741:-56.24,0,-33.5664	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:86:53,27:53:1858:27:972:-63.3584,0,-143.06	0/0:121:121,0:121:4285:0:0:0,-36.4246,-385.83	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:72:72,0:72:2565:0:0:0,-21.6742,-231.1	0/1:132:47,85:47:1670:85:3056:-235.53,0,-110.851	0/0:44:43,1:43:1500:1:36:0,-9.64704,-131.692	0/0:41:41,0:41:1440:0:0:0,-12.3422,-129.894	0/0:94:93,0:93:3296:0:0:0,-27.9958,-296.649	0/0:125:125,0:125:4373:0:0:0,-37.6287,-393.749	0/0:74:74,0:74:2577:0:0:0,-22.2762,-232.175	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7692	0/1:66:31,35:31:1085:35:1256:-93.4773,0,-78.0889	0/1:21:15,6:15:531:6:216:-13.4689,0,-41.8003	0/1:92:52,40:52:1832:40:1428:-101.123,0,-137.463	0/0:95:95,0:95:3323:0:0:0,-28.5978,-299.29	0/0:186:186,0:186:6460:0:0:0,-55.9916,-581.495	0/0:87:86,0:86:3027:0:0:0,-25.8886,-272.302	0/1:97:33,63:33:1183:63:2221:-170.893,0,-77.5195	0/0:61:61,0:61:2157:0:0:0,-18.3628,-194.394	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:57:29,28:29:1021:28:1008:-73.8776,0,-75.0424	0/1:86:33,53:33:1153:53:1878:-143.406,0,-78.1857	0/0:131:131,0:131:4600:0:0:0,-39.4349,-414.168	0/0:86:86,0:86:2984:0:0:0,-25.8886,-268.792	0/0:92:91,0:91:3177:0:0:0,-27.3937,-285.795	0/1:59:24,35:24:848:35:1256:-95.5845,0,-58.8778	0/1:171:98,73:98:3476:73:2612:-183.852,0,-261.577	0/0:49:48,0:48:1680:0:0:0,-14.4494,-151.125	0/0:121:121,0:121:4206:0:0:0,-36.4246,-378.723	0/0:84:84,0:84:2906:0:0:0,-25.2865,-261.773	0/0:44:44,0:44:1546:0:0:0,-13.2453,-139.43	0/1:99:48,51:48:1657:51:1832:-135.358,0,-119.611	0/1:95:34,61:34:1180:61:2196:-169.307,0,-77.9028	0/0:75:74,1:74:2580:1:32:0,-19.3779,-229.248	0/0:172:171,0:171:5982:0:0:0,-51.4761,-538.134
chr04	31073729	.	GTT	ATT,ATC	81476.3	PASS	AB=0.458551,0.540329;ABP=42.9725,40.8416;AC=144,44;AF=0.765957,0.234043;AN=188;AO=3050,1460;CIGAR=1X2M,1X1M1X;DP=4518;DPB=4518;DPRA=0,1.84156;EPP=5974.07,3069.99;EPPR=11.6962;GTI=7;LEN=1,3;MEANALT=1.61702,2.07407;MQM=33.0659,59.711;MQMR=42.5;NS=94;NUMALT=2;ODDS=0.379797;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=99536,51287;QR=139;RO=4;RPL=77,12;RPP=5974.07,3069.99;RPPR=11.6962;RPR=2973,1448;RUN=1,1;SAF=0,0;SAP=6626,3173.36;SAR=3050,1460;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,16,11:0:0:16,11:495,376:-66.7618,-30.8565,-26.04,-36.2231,0,-32.9118	1/1:37:0,37,0:0:0:37,0:1107,0:-89.8823,-11.1381,0,-89.8823,-11.1381,-89.8823	1/1:89:0,89,0:0:0:89,0:2672,0:-217.195,-26.7917,0,-217.195,-26.7917,-217.195	1/1:111:0,111,0:0:0:111,0:3753,0:-309.403,-33.4143,0,-309.403,-33.4143,-309.403	1/2:15:0,12,3:0:0:12,3:386,108:-36.9954,-9.17208,-5.55972,-28.1695,0,-27.2664	1/2:7:0,1,6:0:0:1,6:30,203:-18.894,-16.7754,-16.4744,-2.39816,0,-0.591977	1/2:82:0,39,43:0:0:39,43:1309,1502:-218.263,-122.525,-110.785,-96.065,0,-83.1207	1/1:27:0,26,1:0:0:26,1:778,36:-62.8938,-7.82678,0,-59.953,-4.52954,-59.652	1/1:31:2,29,0:2:67:29,0:860,0:-63.6038,-3.11956,0,-64.2058,-8.72987,-69.4931	1/1:16:0,16,0:0:0:16,0:541,0:-44.7448,-4.81648,0,-44.7448,-4.81648,-44.7448	1/2:23:0,3,19:0:0:3,19:96,670:-61.5597,-54.6427,-53.7396,-6.94706,0,-1.22749	1/2:104:0,35,69:0:0:35,69:1051,2435:-273.721,-198.63,-188.094,-75.3901,0,-54.619	1/1:17:0,17,0:0:0:17,0:525,0:-43.4647,-5.11751,0,-43.4647,-5.11751,-43.4647	1/1:8:0,8,0:0:0:8,0:256,0:-21.1635,-2.40824,0,-21.1635,-2.40824,-21.1635	1/1:13:0,13,0:0:0:13,0:443,0:-36.9027,-3.91339,0,-36.9027,-3.91339,-36.9027	1/2:41:0,9,32:0:0:9,32:280,1141:-113.085,-93.048,-90.3387,-20.3349,0,-10.7019	1/2:24:0,9,15:0:0:9,15:268,536:-63.0003,-44.0596,-41.3503,-19.242,0,-14.7265	1/1:10:0,10,0:0:0:10,0:314,0:-26.3783,-3.0103,0,-26.3783,-3.0103,-26.3783	1/2:11:0,5,6:0:0:5,6:150,216:-28.5847,-17.9843,-16.4792,-10.9111,0,-9.10493	1/2:108:0,43,65:0:0:43,65:1453,2266:-290.947,-184.542,-171.598,-106.73,0,-87.1626	1/2:93:0,29,64:0:0:29,64:920,2239:-248.914,-182.502,-173.772,-66.7189,0,-47.453	1/2:45:0,21,24:0:0:21,24:741,859:-125.071,-70.4071,-64.0855,-55.0033,0,-47.7786	1/1:28:0,27,1:0:0:27,1:916,28:-75.1553,-8.12781,0,-72.9376,-5.62911,-72.6366	1/2:36:0,24,12:0:0:24,12:768,423:-90.1471,-34.7927,-27.568,-55.6859,0,-52.0735	1/2:65:0,41,24:0:0:41,24:1302,851:-163.378,-69.6851,-57.3429,-94.023,0,-86.7983	1/1:70:0,70,0:0:0:70,0:2464,0:-203.85,-21.0721,0,-203.85,-21.0721,-203.85	1/2:195:0,124,71:0:0:124,71:3948,2503:-488.702,-204.115,-166.787,-284.916,0,-263.543	1/1:8:0,8,0:0:0:8,0:257,0:-21.2547,-2.40824,0,-21.2547,-2.40824,-21.2547	1/1:55:0,55,0:0:0:55,0:1948,0:-161.028,-16.5567,0,-161.028,-16.5567,-161.028	1/2:75:0,20,55:0:0:20,55:636,1924:-202.875,-156.817,-150.797,-46.3626,0,-29.806	1/2:71:0,21,50:0:0:21,50:679,1742:-191.176,-142.009,-135.687,-49.4767,0,-34.4252	1/2:83:0,73,9:0:0:73,9:2312,322:-192.921,-26.4171,-4.44193,-166.656,0,-163.947	1/1:13:0,12,1:0:0:12,1:384,36:-31.2458,-3.61236,0,-28.303,-0.315115,-28.002	1/1:15:0,15,0:0:0:15,0:450,0:-36.7089,-4.51545,0,-36.7089,-4.51545,-36.7089	1/1:15:0,14,1:0:0:14,1:427,36:-34.8316,-4.21442,0,-31.8887,-0.917175,-31.5877	1/1:29:0,29,0:0:0:29,0:859,0:-69.9506,-8.72987,0,-69.9506,-8.72987,-69.9506	1/2:123:0,39,84:0:0:39,84:1398,2963:-345.263,-241.615,-229.875,-103.984,0,-78.6978	1/2:52:0,26,26:0:0:26,26:825,901:-132.928,-73.5751,-65.7483,-59.6698,0,-51.843	1/1:3:0,3,0:0:0:3,0:90,0:-7.55772,-0.90309,0,-7.55772,-0.90309,-7.55772	1/1:5:0,5,0:0:0:5,0:154,0:-12.7843,-1.50515,0,-12.7843,-1.50515,-12.7843	1/1:106:1,104,1:1:36:104,1:3251,36:-261.464,-28.4431,0,-258.827,-28.3658,-261.394	1/2:17:0,2,15:0:0:2,15:64,517:-46.9502,-42.3403,-41.7383,-4.90624,0,-0.390793	1/2:58:0,35,23:0:0:35,23:1098,817:-145.561,-66.7964,-56.2603,-79.0914,0,-72.1677	1/2:28:0,6,22:0:0:6,22:204,770:-77.9168,-62.9966,-61.1904,-15.2386,0,-8.61597	1/1:12:0,12,0:0:0:12,0:406,0:-32.0807,-3.61236,0,-32.0807,-3.61236,-32.0807	1/1:61:0,61,0:0:0:61,0:2174,0:-180.477,-18.3628,0,-180.477,-18.3628,-180.477	1/1:56:0,55,1:0:0:55,1:1668,28:-135.762,-16.5567,0,-133.544,-14.058,-133.242	1/2:142:1,87,54:1:36:87,54:2940,1887:-364.516,-149.233,-125.936,-212.668,0,-199.306	1/2:85:0,35,50:0:0:35,50:1184,1766:-230.774,-144.168,-133.632,-86.9325,0,-71.881	1/2:78:0,25,53:0:0:25,53:839,1856:-212.774,-151.361,-143.835,-61.7338,0,-45.7792	1/2:119:0,71,48:0:0:71,48:2495,1668:-320.131,-135.825,-114.451,-184.643,0,-170.194	1/1:18:0,17,1:0:0:17,1:578,36:-47.3684,-5.11751,0,-44.4282,-1.82027,-44.1272	1/1:52:0,52,0:0:0:52,0:1566,0:-127.403,-15.6536,0,-127.403,-15.6536,-127.403	1/2:55:0,26,29:0:0:26,29:928,1016:-151.66,-83.0207,-75.194,-68.9775,0,-60.2476	1/2:18:0,12,6:0:0:12,6:358,204:-42.1981,-16.8868,-13.2745,-25.6272,0,-23.821	1/1:39:0,39,0:0:0:39,0:1237,0:-101.169,-11.7402,0,-101.169,-11.7402,-101.169	1/2:34:0,17,17:0:0:17,17:562,584:-89.0012,-47.7635,-42.646,-41.5609,0,-36.4434	1/1:16:0,16,0:0:0:16,0:566,0:-47.1836,-4.81648,0,-47.1836,-4.81648,-47.1836	1/2:15:0,12,3:0:0:12,3:422,108:-40.3997,-9.17208,-5.55972,-31.5801,0,-30.677	1/2:31:0,5,26:0:0:5,26:162,936:-88.657,-76.7327,-75.2275,-12.2329,0,-4.40609	1/1:22:0,22,0:0:0:22,0:737,0:-61.0374,-6.62266,0,-61.0374,-6.62266,-61.0374	1/1:6:0,6,0:0:0:6,0:204,0:-16.1097,-1.80618,0,-16.1097,-1.80618,-16.1097	1/1:102:0,102,0:0:0:102,0:3634,0:-300.56,-30.7051,0,-300.56,-30.7051,-300.56	1/2:75:0,24,51:0:0:24,51:815,1788:-205.28,-145.588,-138.364,-60.0145,0,-44.662	1/1:11:0,11,0:0:0:11,0:360,0:-30.5205,-3.31133,0,-30.5205,-3.31133,-30.5205	1/1:39:0,39,0:0:0:39,0:1293,0:-106.443,-11.7402,0,-106.443,-11.7402,-106.443	1/1:50:0,50,0:0:0:50,0:1683,0:-138.89,-15.0515,0,-138.89,-15.0515,-138.89	1/1:21:0,21,0:0:0:21,0:700,0:-57.6965,-6.32163,0,-57.6965,-6.32163,-57.6965	1/1:4:0,4,0:0:0:4,0:128,0:-10.7267,-1.20412,0,-10.7267,-1.20412,-10.7267	1/1:15:0,15,0:0:0:15,0:460,0:-37.8867,-4.51545,0,-37.8867,-4.51545,-37.8867	1/2:36:0,17,19:0:0:17,19:593,660:-98.5865,-53.8706,-48.7531,-45.0515,0,-39.3319	1/2:12:0,8,4:0:0:8,4:274,142:-32.225,-11.9251,-9.51685,-20.6417,0,-19.4376	1/2:121:0,77,44:0:0:77,44:2295,1545:-289.285,-126.094,-102.915,-163.512,0,-150.267	1/1:21:0,21,0:0:0:21,0:621,0:-50.5837,-6.32163,0,-50.5837,-6.32163,-50.5837	1/1:23:0,23,0:0:0:23,0:714,0:-58.5556,-6.92369,0,-58.5556,-6.92369,-58.5556	1/1:92:0,92,0:0:0:92,0:3093,0:-253.322,-27.6948,0,-253.322,-27.6948,-253.322	1/2:32:0,22,10:0:0:22,10:659,337:-74.329,-27.6438,-21.0212,-47.0009,0,-43.9906	1/1:30:0,28,2:0:0:28,2:833,54:-67.3882,-8.42884,0,-63.1311,-3.90198,-62.529	1/1:70:0,68,2:0:0:68,2:2033,72:-164.472,-20.47,0,-158.595,-14.2354,-157.993	1/2:148:0,70,78:0:0:70,78:2226,2780:-385.974,-226.962,-205.89,-159.331,0,-135.851	1/2:49:0,19,30:0:0:19,30:568,1065:-127.354,-87.1306,-81.411,-40.5255,0,-31.4946	1/1:181:0,177,2:0:0:177,2:5998,72:-493.294,-53.2823,0,-487.419,-47.3276,-486.817	1/1:10:0,10,0:0:0:10,0:338,0:-28.2632,-3.0103,0,-28.2632,-3.0103,-28.2632	1/1:16:0,16,0:0:0:16,0:547,0:-45.4508,-4.81648,0,-45.4508,-4.81648,-45.4508	1/2:33:0,7,26:0:0:7,26:236,905:-91.5145,-73.9365,-71.8293,-17.8981,0,-10.0713	1/2:120:0,37,83:0:0:37,83:1242,2925:-329.808,-238.476,-227.338,-91.653,0,-66.6675	1/2:4:0,3,1:0:0:3,1:90,36:-9.61453,-3.29724,-2.39415,-6.65463,0,-6.3536	1/1:7:0,7,0:0:0:7,0:210,0:-17.2748,-2.10721,0,-17.2748,-2.10721,-17.2748	1/1:30:0,30,0:0:0:30,0:913,0:-74.8627,-9.0309,0,-74.8627,-9.0309,-74.8627	1/1:8:0,8,0:0:0:8,0:254,0:-20.9811,-2.40824,0,-20.9811,-2.40824,-20.9811	1/2:35:0,12,23:0:0:12,23:384,812:-94.1535,-66.4771,-62.8647,-27.9879,0,-21.0642	1/2:53:0,9,44:0:0:9,44:308,1549:-149.264,-126.456,-123.747,-23.1292,0,-9.88385	1/1:81:0,81,0:0:0:81,0:2748,0:-227.706,-24.3834,0,-227.706,-24.3834,-227.706	1/1:41:0,41,0:0:0:41,0:1398,0:-115.993,-12.3422,0,-115.993,-12.3422,-115.993
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chr04	31074502	.	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chr04	31074585	.	TGCT	AGCT	168549	PASS	AB=0.502931;ABP=3.32851;AC=140;AF=0.744681;AN=188;AO=7948;CIGAR=1X3M;DP=10113;DPB=10113.8;DPRA=54.3602;EPP=17253.2;EPPR=4606.55;GTI=2;LEN=1;MEANALT=1.30108;MQM=59.9994;MQMR=59.9878;NS=94;NUMALT=1;ODDS=0.267894;PAIRED=0;PAIREDR=0;PAO=1.5;PQA=54;PQR=0;PRO=0;QA=282704;QR=74875;RO=2128;RPL=7947;RPP=17253.2;RPPR=4606.55;RPR=1;RUN=1;SAF=7948;SAP=17261.9;SAR=0;SRF=2126;SRP=4606.55;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:32,32:32:1133:32:1101:-80.1241,0,-83.0124	1/1:104:0,102:0:0:102:3652:-328.534,-30.7051,0	1/1:186:1,182:1:35:182:6482:-580.001,-51.9281,0	1/1:298:0,296:0:0:296:10562:-950.165,-89.1049,0	0/1:27:7,20:7:252:20:707:-55.8268,0,-14.9011	0/1:23:10,13:10:355:13:455:-34.3583,0,-25.367	0/1:103:59,44:59:2051:44:1575:-111.035,0,-153.853	1/1:116:0,116:0:0:116:4100:-369.188,-34.9195,0	1/1:132:2,130:2:72:130:4605:-407.781,-32.8992,0	1/1:91:0,91:0:0:91:3222:-290.203,-27.3937,0	0/1:50:23,26:23:812:26:920:-68.1128,0,-58.3965	0/1:118:50,68:50:1751:68:2423:-182.804,0,-122.35	1/1:124:0,124:0:0:124:4418:-397.793,-37.3277,0	1/1:79:0,78:0:0:78:2784:-250.451,-23.4803,0	1/1:110:0,110:0:0:110:3911:-352.185,-33.1133,0	0/1:67:41,26:41:1463:26:927:-63.5784,0,-111.798	0/1:43:22,21:22:759:21:723:-52.4442,0,-55.6825	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	0/1:43:19,24:19:659:24:864:-65.1383,0,-46.688	0/1:283:138,142:138:4885:142:5074:-372.202,0,-355.205	0/1:220:99,121:99:3457:121:4301:-321.042,0,-245.121	0/1:55:38,17:38:1343:17:603:-38.0429,0,-104.613	1/1:179:1,178:1:35:178:6333:-566.566,-50.3857,0	0/1:38:5,33:5:177:33:1163:-93.537,0,-4.83772	0/1:67:35,32:35:1185:32:1135:-82.2891,0,-86.7782	1/1:269:0,269:0:0:269:9546:-859.102,-80.9771,0	0/1:364:169,193:169:5983:193:6879:-509.845,0,-429.25	1/1:57:1,56:1:36:56:1991:-175.865,-13.5604,0	1/1:307:1,306:1:30:306:10939:-981.407,-89.4166,0	0/1:30:19,11:19:678:11:396:-26.9518,0,-52.318	0/1:140:75,64:75:2616:64:2283:-163.528,0,-193.485	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:27:12,15:12:417:15:536:-40.447,0,-29.7331	1/1:6:0,6:0:0:6:205:-18.7836,-1.80618,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:218:103,115:103:3638:115:4063:-300.235,0,-262.003	0/1:122:51,71:51:1776:71:2540:-192.125,0,-123.395	1/1:72:0,72:0:0:72:2524:-227.412,-21.6742,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:148:4,144:4:132:144:5155:-451.885,-32.347,0	0/1:49:24,25:24:841:25:892:-65.8492,0,-61.2577	0/1:140:73,65:73:2558:65:2299:-165.337,0,-188.638	0/1:101:49,52:49:1721:52:1854:-136.734,0,-124.77	1/1:73:0,73:0:0:73:2583:-232.72,-21.9752,0	1/1:139:0,139:0:0:139:4959:-446.461,-41.8432,0	1/1:127:2,125:2:72:125:4446:-393.473,-31.3941,0	0/1:146:70,76:70:2465:76:2724:-201.453,0,-178.154	0/1:105:52,53:52:1851:53:1896:-139.31,0,-135.261	0/1:79:29,50:29:1026:50:1772:-135.982,0,-68.8713	0/1:145:70,74:70:2484:74:2614:-191.8,0,-180.106	0/1:7:5,2:5:178:2:72:-4.72951,0,-14.2615	1/1:167:0,165:0:0:165:5874:-528.48,-49.67,0	0/1:75:43,32:43:1497:32:1120:-78.5276,0,-112.444	0/1:12:8,4:8:286:4:144:-9.70126,0,-22.4732	1/1:176:1,174:1:36:174:6177:-552.459,-49.417,0	0/1:61:38,23:38:1341:23:817:-55.4879,0,-102.627	1/1:20:0,20:0:0:20:698:-63.1414,-6.0206,0	0/1:19:15,4:15:531:4:144:-7.59405,0,-42.4026	0/1:107:47,58:47:1643:58:2067:-154.332,0,-116.188	1/1:116:3,113:3:108:113:4023:-352.165,-24.8844,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:234:0,233:0:0:233:8306:-747.19,-70.14,0	0/1:132:66,66:66:2328:66:2368:-173.642,0,-170.045	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	1/1:109:0,102:0:0:102:3642:-327.642,-30.7051,0	1/1:253:0,253:0:0:253:8991:-809.173,-76.1606,0	1/1:185:3,180:3:108:180:6426:-568.355,-45.3702,0	1/1:82:0,82:0:0:82:2908:-261.955,-24.6845,0	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	0/1:45:24,21:24:827:21:746:-53.9178,0,-61.1974	0/1:29:20,9:20:693:9:320:-20.4125,0,-53.9608	0/1:157:76,81:76:2676:81:2879:-212.086,0,-193.823	1/1:116:0,115:0:0:115:4109:-369.743,-34.6185,0	1/1:204:0,204:0:0:204:7238:-651.477,-61.4101,0	1/1:236:0,236:0:0:236:8459:-761.31,-71.0431,0	0/1:42:13,29:13:455:29:1032:-80.5502,0,-28.6395	1/1:123:0,123:0:0:123:4370:-393.417,-37.0267,0	0/1:19:11,8:11:394:8:288:-20.5478,0,-30.082	0/1:138:85,51:85:3022:51:1805:-121.431,0,-230.912	0/1:117:59,57:59:2060:57:2032:-147.873,0,-150.39	1/1:243:0,243:0:0:243:8623:-776.071,-73.1503,0	1/1:68:0,68:0:0:68:2404:-216.615,-20.47,0	1/1:89:1,88:1:36:88:3132:-278.92,-23.604,0	0/1:72:35,37:35:1233:37:1316:-97.0676,0,-89.6	0/1:172:85,87:85:3008:87:3040:-222.053,0,-219.176	1/1:26:0,26:0:0:26:916:-82.7565,-7.82678,0	1/1:89:0,89:0:0:89:3161:-284.715,-26.7917,0	1/1:91:0,91:0:0:91:3252:-292.902,-27.3937,0	1/1:71:0,71:0:0:71:2522:-227.23,-21.3731,0	0/1:86:30,56:30:1065:56:1978:-152.405,0,-70.274	0/1:99:68,31:68:2386:31:1112:-70.5894,0,-185.194	1/1:152:0,152:0:0:152:5390:-485.234,-45.7566,0	1/1:133:1,132:1:36:132:4655:-415.516,-36.4387,0
chr04	31097110	.	T	A	138969	PASS	AB=0.511865;ABP=7.44193;AC=142;AF=0.755319;AN=188;AO=6512;CIGAR=1X;DP=8296;DPB=8296;DPRA=0;EPP=14108.9;EPPR=3812.01;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.0765;MQMR=59.8979;NS=94;NUMALT=1;ODDS=0.0864456;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232835;QR=63328;RO=1782;RPL=6508;RPP=14108.9;RPPR=3812.01;RPR=4;RUN=1;SAF=0;SAP=14143.6;SAR=6512;SRF=0;SRP=3872.57;SRR=1782;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:87:54,33:54:1924:33:1179:-80.1637,0,-147.225	1/1:83:0,83:0:0:83:2973:-267.649,-24.9855,0	1/1:156:0,156:0:0:156:5569:-501.178,-46.9607,0	1/1:122:0,122:0:0:122:4373:-392.922,-36.7257,0	0/1:53:27,26:27:968:26:936:-68.6049,0,-71.4828	0/1:44:21,23:21:748:23:824:-61.2134,0,-54.4	0/1:131:59,72:59:2089:72:2580:-192.836,0,-148.799	1/1:183:0,183:0:0:183:6526:-585.628,-55.0885,0	1/1:60:0,60:0:0:60:2152:-193.881,-18.0618,0	1/1:87:0,87:0:0:87:3103:-278.877,-26.1896,0	0/1:49:20,29:20:716:29:1044:-79.4858,0,-50.0172	0/1:124:61,63:61:2184:63:2268:-167.043,0,-159.494	1/1:81:0,81:0:0:81:2912:-261.438,-24.3834,0	1/1:45:0,45:0:0:45:1596:-143.891,-13.5464,0	1/1:76:0,76:0:0:76:2728:-245.58,-22.8783,0	0/1:86:44,42:44:1580:42:1508:-110.116,0,-116.603	0/1:26:15,11:15:532:11:392:-27.7933,0,-40.3863	1/1:41:0,41:0:0:41:1454:-131.081,-12.3422,0	0/1:46:30,16:30:1064:16:576:-38.3267,0,-82.2243	0/1:96:40,56:40:1401:56:2008:-151.614,0,-97.4839	0/1:201:94,106:94:3322:106:3808:-281.947,0,-238.671	0/1:31:20,11:20:708:11:387:-25.834,0,-54.7118	1/1:119:0,119:0:0:119:4232:-380.593,-35.8226,0	1/1:110:5,105:5:180:105:3736:-318.844,-16.5612,0	0/1:88:51,37:51:1805:37:1320:-92.1011,0,-136.239	1/1:277:0,277:0:0:277:9905:-891.068,-83.3853,0	0/1:327:142,185:142:5034:185:6619:-496.466,0,-354.718	1/1:34:0,34:0:0:34:1220:-110.089,-10.235,0	1/1:195:0,195:0:0:195:6984:-628.31,-58.7009,0	0/1:104:45,59:45:1589:59:2124:-159.937,0,-111.991	0/1:67:27,40:27:968:40:1417:-107.622,0,-67.2684	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:21:4,17:4:144:17:608:-48.5955,0,-6.99199	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:1,3:1:32:3:104:-8.49868,0,-1.99519	1/1:14:0,14:0:0:14:485:-43.9688,-4.21442,0	0/1:175:90,85:90:3200:85:3037:-220.794,0,-235.545	0/1:57:27,30:27:972:30:1059:-78.4491,0,-70.6369	1/1:45:0,45:0:0:45:1610:-145.175,-13.5464,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:116:1,114:1:36:114:4080:-363.301,-31.38,0	0/1:21:7,14:7:252:14:500:-39.0145,0,-16.7073	0/1:102:57,45:57:2010:45:1612:-114.401,0,-150.452	0/1:58:24,34:24:860:34:1215:-92.1376,0,-60.2621	1/1:74:0,74:0:0:74:2656:-239.263,-22.2762,0	1/1:148:0,148:0:0:148:5257:-473.235,-44.5524,0	1/1:140:1,139:1:36:139:4964:-441.914,-38.5459,0	0/1:140:74,66:74:2611:66:2343:-168.877,0,-193.07	0/1:47:18,29:18:625:29:1021:-77.5996,0,-42.4237	0/1:105:45,60:45:1593:60:2160:-161.85,0,-112.05	0/1:154:67,87:67:2380:87:3109:-233.106,0,-168.055	0/1:9:4,5:4:144:5:180:-13.8381,0,-10.6043	1/1:123:0,123:0:0:123:4383:-394.353,-37.0267,0	0/1:41:18,23:18:648:23:828:-62.2715,0,-46.3078	0/1:8:4,4:4:144:4:144:-10.6645,0,-10.9038	1/1:123:0,123:0:0:123:4396:-395.544,-37.0267,0	0/1:86:52,34:52:1833:34:1208:-82.7087,0,-139.36	1/1:7:0,7:0:0:7:252:-23.0207,-2.10721,0	0/1:24:9,15:9:320:15:540:-41.7118,0,-21.9176	0/1:80:36,44:36:1284:44:1575:-117.951,0,-91.781	1/1:95:0,95:0:0:95:3404:-306.461,-28.5979,0	1/1:5:0,5:0:0:5:180:-16.5474,-1.50515,0	1/1:86:0,86:0:0:86:3078:-277.231,-25.8886,0	0/1:162:74,88:74:2606:88:3157:-235.005,0,-186.009	1/1:89:4,85:4:144:85:3048:-260.366,-13.4781,0	1/1:54:0,54:0:0:54:1932:-173.708,-16.2556,0	1/1:164:0,164:0:0:164:5865:-527.926,-49.3689,0	1/1:202:0,202:0:0:202:7235:-651.142,-60.8081,0	1/1:30:0,30:0:0:30:1080:-97.4326,-9.0309,0	1/1:101:1,100:1:36:100:3576:-318.247,-26.8058,0	0/1:46:22,24:22:788:24:864:-64.1766,0,-57.3798	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5027	0/1:113:57,56:57:2021:56:1983:-144.664,0,-148.145	1/1:139:0,139:0:0:139:4953:-445.479,-41.8432,0	1/1:184:0,184:0:0:184:6582:-591.136,-55.3895,0	1/1:109:0,109:0:0:109:3898:-350.628,-32.8123,0	0/1:60:27,33:27:949:33:1176:-88.0123,0,-67.661	1/1:107:1,106:1:36:106:3793:-337.777,-28.6119,0	0/1:18:7,11:7:248:11:389:-29.9255,0,-17.2457	0/1:83:39,44:39:1392:44:1571:-116.687,0,-100.594	0/1:98:49,49:49:1752:49:1737:-127,0,-128.273	1/1:291:0,291:0:0:291:10413:-936.414,-87.5997,0	1/1:74:0,74:0:0:74:2660:-239.639,-22.2762,0	1/1:75:0,75:0:0:75:2688:-241.561,-22.5773,0	0/1:67:29,38:29:1032:38:1360:-102.527,0,-73.0245	0/1:122:63,59:63:2268:59:2107:-152.416,0,-167.652	1/1:29:0,29:0:0:29:1044:-92.9471,-8.72987,0	1/1:60:0,60:0:0:60:2156:-194.249,-18.0618,0	1/1:74:0,74:0:0:74:2648:-237.904,-22.2762,0	1/1:27:1,26:1:36:26:936:-80.6635,-4.52954,0	0/1:83:53,30:53:1896:30:1076:-72.1592,0,-145.933	0/1:59:47,12:47:1692:12:428:-21.0934,0,-134.806	1/1:101:0,101:0:0:101:3600:-324.129,-30.404,0	1/1:110:0,110:0:0:110:3939:-353.946,-33.1133,0
chr04	31097237	.	A	G	113642	PASS	AB=0.495666;ABP=3.51849;AC=140;AF=0.744681;AN=188;AO=5347;CIGAR=1X;DP=6943;DPB=6943;DPRA=11.5886;EPP=11613.9;EPPR=3429.68;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9602;MQMR=59.9762;NS=94;NUMALT=1;ODDS=1.78844;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191345;QR=56982;RO=1594;RPL=5347;RPP=11613.9;RPPR=3429.68;RPR=0;RUN=1;SAF=0;SAP=11613.9;SAR=5347;SRF=0;SRP=3464.34;SRR=1594;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:45,35:45:1597:35:1256:-89.2629,0,-119.936	1/1:65:0,65:0:0:65:2320:-209.061,-19.567,0	1/1:128:0,128:0:0:128:4560:-410.566,-38.5318,0	1/1:114:0,114:0:0:114:4084:-367.746,-34.3174,0	0/1:40:24,16:24:845:16:576:-40.1338,0,-64.3259	0/1:17:12,5:12:417:5:180:-11.4346,0,-32.7427	0/1:45:24,21:24:860:21:728:-52.2922,0,-64.1755	1/1:97:0,97:0:0:97:3471:-312.601,-29.1999,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	0/1:50:25,25:25:900:25:896:-65.9089,0,-66.2695	0/1:115:69,46:69:2484:46:1647:-113.899,0,-189.194	1/1:70:0,70:0:0:70:2507:-225.882,-21.0721,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:83:0,83:0:0:83:2962:-266.585,-24.9855,0	0/1:78:39,39:39:1383:39:1392:-102.099,0,-101.288	0/1:34:15,19:15:536:19:684:-51.6553,0,-38.3398	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/1:126:41,85:41:1472:85:3025:-234.55,0,-94.8464	0/1:163:77,86:77:2764:86:3088:-229.079,0,-199.933	0/1:74:42,32:42:1504:32:1148:-81.3536,0,-113.378	1/1:76:0,76:0:0:76:2736:-246.482,-22.8783,0	1/1:59:2,57:2:72:57:2028:-175.953,-10.924,0	0/1:102:50,52:50:1796:52:1872:-138.054,0,-131.217	1/1:139:0,139:0:0:139:4980:-448.348,-41.8432,0	0/1:240:108,132:108:3869:132:4736:-354.15,0,-276.156	1/1:31:0,31:0:0:31:1116:-100.323,-9.33193,0	1/1:248:0,248:0:0:248:8861:-797.476,-74.6554,0	0/1:45:21,24:21:748:24:860:-64.1755,0,-54.0989	0/1:56:25,31:25:881:31:1112:-83.5337,0,-62.742	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:200:80,120:80:2876:120:4292:-326.252,0,-198.87	0/1:69:38,31:38:1364:31:1112:-79.6203,0,-102.29	1/1:42:0,42:0:0:42:1503:-135.564,-12.6433,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:59:2,57:2:72:57:2048:-177.755,-10.924,0	0/1:34:19,15:19:684:15:540:-38.7015,0,-51.6553	0/1:116:57,59:57:2033:59:2101:-154.44,0,-148.321	0/1:75:38,37:38:1345:37:1328:-97.245,0,-98.7709	1/1:59:0,59:0:0:59:2102:-189.42,-17.7608,0	1/1:116:0,116:0:0:116:4164:-374.941,-34.9195,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:127:59,68:59:2082:68:2426:-180.364,0,-149.416	0/1:78:38,40:38:1364:40:1432:-105.697,0,-99.5804	0/1:66:43,23:43:1529:23:820:-54.2545,0,-118.033	0/1:87:46,41:46:1633:41:1472:-106.587,0,-121.062	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0812	1/1:94:0,94:0:0:94:3355:-302.164,-28.2968,0	0/1:27:21,6:21:741:6:216:-11.6627,0,-58.8838	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:93:0,93:0:0:93:3324:-299.249,-27.9958,0	0/1:35:19,16:19:680:16:576:-41.6389,0,-50.9931	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:75:35,40:35:1245:40:1424:-105.562,0,-89.7755	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:100:0,100:0:0:100:3538:-318.625,-30.103,0	0/1:97:58,39:58:2065:39:1400:-97.0993,0,-156.919	1/1:83:2,81:2:72:81:2868:-251.519,-18.1488,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:135:0,134:0:0:134:4795:-431.344,-40.338,0	1/1:157:1,156:1:36:156:5599:-500.431,-43.6634,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:46:25,21:25:900:21:756:-54.5198,0,-67.4736	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:116:57,59:57:2044:59:2111:-155.339,0,-149.31	1/1:120:0,120:0:0:120:4312:-388.255,-36.1236,0	1/1:106:0,105:0:0:105:3755:-337.938,-31.6082,0	1/1:126:0,126:0:0:126:4516:-406.607,-37.9298,0	0/1:55:23,32:23:824:32:1144:-86.7129,0,-57.9267	1/1:74:1,73:1:36:73:2616:-232.089,-18.6779,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:48:28,20:28:1008:20:716:-50.3183,0,-76.5869	0/1:39:15,24:15:540:24:864:-66.3424,0,-37.1964	1/1:199:0,199:0:0:199:7096:-638.701,-59.905,0	1/1:72:0,72:0:0:72:2579:-232.359,-21.6742,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:41:22,19:22:788:19:667:-48.0124,0,-58.9026	0/1:139:61,78:61:2192:78:2800:-209.741,0,-155.702	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:71:0,71:0:0:71:2532:-228.132,-21.3731,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:75:44,31:44:1576:31:1116:-78.1744,0,-119.554	0/1:105:73,32:73:2609:32:1131:-70.4896,0,-203.448	1/1:78:0,78:0:0:78:2783:-250.58,-23.4803,0	1/1:105:2,103:2:72:103:3687:-325.194,-24.7714,0
chr04	31097328	.	C	T	8941.62	PASS	AB=0.502255;ABP=3.11803;AC=46;AF=0.247312;AN=186;AO=1244;CIGAR=1X;DP=5486;DPB=5486;DPRA=0.954913;EPP=2508.24;EPPR=9108.24;GTI=5;LEN=1;MEANALT=1.01818;MQM=25.5386;MQMR=59.5712;NS=93;NUMALT=1;ODDS=2.40509;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44460;QR=151578;RO=4237;RPL=1221;RPP=2508.24;RPPR=9108.24;RPR=23;RUN=1;SAF=0;SAP=2704.32;SAR=1244;SRF=0;SRP=9203.54;SRR=4237;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:30,25:30:1080:25:896:-43.9036,0,-80.9541	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.55	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.374	0/0:136:136,0:136:4884:0:0:0,-40.9401,-439.331	0/1:15:4,11:4:140:11:396:-20.5429,0,-8.42913	0/1:26:12,14:12:432:14:504:-25.2275,0,-31.3944	0/1:89:42,47:42:1508:47:1663:-79.2151,0,-109.209	0/0:72:71,0:71:2503:0:0:0,-21.3731,-225.159	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.31	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.172	0/1:27:14,13:14:500:13:468:-20.3036,0,-37.1946	0/1:108:58,50:58:2072:50:1800:-80.6562,0,-154.207	0/0:73:72,0:72:2569:0:0:0,-21.6742,-231.084	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.762	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.85	0/1:59:31,28:31:1116:28:1008:-42.627,0,-82.9696	0/1:21:9,12:9:324:12:428:-22.0248,0,-23.1842	0/0:21:20,1:20:712:1:36:0,-4.04276,-62.1278	0/1:17:10,7:10:360:7:252:-11.7625,0,-27.6268	0/1:71:25,46:25:892:46:1644:-80.9622,0,-58.9986	0/1:189:94,95:94:3372:95:3406:-156.508,0,-246.797	0/1:39:16,23:16:576:23:824:-39.3041,0,-40.4348	0/0:68:66,2:66:2349:2:72:0,-16.1412,-207.296	0/0:69:63,6:63:2260:6:214:0,-5.05513,-187.936	0/1:68:36,32:36:1288:32:1152:-48.3054,0,-95.7535	0/0:135:135,0:135:4806:0:0:0,-40.639,-432.05	0/1:175:94,81:94:3364:81:2892:-126.46,0,-250.239	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.735	0/0:146:146,0:146:5240:0:0:0,-43.9504,-471.475	0/1:65:42,23:42:1512:23:824:-32.43,0,-116.768	0/1:60:35,25:35:1252:25:896:-40.6317,0,-94.9227	1/1:1:0,1:0:0:1:36:-1.89153,-0.30103,0	0/1:6:2,4:2:72:4:144:-6.97588,0,-5.01934	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:2,5:2:72:5:174:-12.5548,0,-4.72951	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:174:94,80:94:3375:80:2838:-120.915,0,-251.567	0/1:49:30,19:30:1072:19:677:-26.3064,0,-82.0333	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	.:.:.:.:.:.:.:.	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204	0/1:16:10,6:10:360:6:212:-8.20385,0,-27.9064	0/1:103:36,67:36:1296:67:2378:-113.097,0,-85.9272	0/1:54:28,26:28:1004:26:936:-40.0287,0,-74.4198	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.444	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.014	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.377	0/1:57:31,26:31:1088:26:936:-41.3495,0,-81.0674	0/1:43:24,19:24:860:19:684:-29.588,0,-64.7638	0/1:51:27,24:27:957:24:856:-39.2561,0,-71.0913	0/1:74:32,42:32:1152:42:1496:-70.1983,0,-81.5136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:13:12,1:12:432:1:36:0,-0.334623,-35.6342	0/1:27:16,11:16:557:11:392:-18.0369,0,-42.2816	0/1:5:4,1:4:144:1:36:-0.961756,0,-11.8085	0/0:73:73,0:73:2590:0:0:0,-21.9752,-232.845	0/1:69:35,34:35:1260:34:1224:-53.9258,0,-92.9207	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:4,2:4:144:2:68:-2.2103,0,-11.5074	0/1:42:14,28:14:504:28:991:-52.0486,0,-33.0548	0/0:71:70,1:70:2520:1:33:0,-18.0839,-223.74	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:84:83,1:83:2972:1:36:0,-21.7078,-264.133	0/1:44:18,26:18:648:26:932:-45.8784,0,-45.4066	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.752	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.19	0/0:87:84,2:84:2997:2:72:0,-21.8755,-265.504	0/0:109:108,1:108:3863:1:34:0,-29.4258,-344.444	0/0:22:21,0:21:748:0:0:0,-6.32163,-67.2863	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.397	0/1:33:15,18:15:532:18:648:-29.5156,0,-38.2791	0/1:11:8,3:8:271:3:104:-2.94126,0,-21.4081	0/1:84:33,51:33:1180:51:1819:-92.1239,0,-81.2001	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.954	0/0:116:116,0:116:4141:0:0:0,-34.9195,-372.616	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.081	0/1:16:6,10:6:216:10:360:-17.6243,0,-14.974	0/0:65:64,1:64:2296:1:36:0,-17.3838,-204.663	0/1:4:1,3:1:32:3:108:-6.31617,0,-1.99519	0/1:46:28,18:28:1008:18:648:-28.0507,0,-77.189	0/1:35:21,14:21:756:14:496:-21.8897,0,-57.8312	0/0:156:154,2:154:5497:2:64:0,-40.9041,-488.442	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.904	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.302	0/1:37:24,13:24:860:13:468:-17.1238,0,-66.5536	0/1:142:70,72:70:2516:72:2569:-112.466,0,-183.851	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4088	0/0:66:65,0:65:2328:0:0:0,-19.5669,-209.331	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.745	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:62:32,30:32:1140:30:1076:-45.8671,0,-84.0867	0/1:58:17,41:17:612:41:1468:-72.0109,0,-37.5237	0/0:151:151,0:151:5386:0:0:0,-45.4555,-484.797	0/0:114:114,0:114:4085:0:0:0,-34.3174,-367.741
chr04	31098215	.	C	T	7096.98	PASS	AB=0.484615;ABP=4.88111;AC=42;AF=0.228261;AN=184;AO=447;CIGAR=1X;DP=2032;DPB=2032;DPRA=0.944498;EPP=956.364;EPPR=3394.99;GTI=0;LEN=1;MEANALT=1.06522;MQM=59.962;MQMR=59.9943;NS=92;NUMALT=1;ODDS=1.76469;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=16011;QR=56133;RO=1582;RPL=445;RPP=956.364;RPPR=3394.99;RPR=2;RUN=1;SAF=447;SAP=973.658;SAR=0;SRF=1582;SRP=3438.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:7,4:7:244:4:144:-10.0023,0,-18.9881	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.097	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:17:11,6:11:396:6:212:-14.3073,0,-30.8652	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/1:11:5,6:5:180:6:205:-15.4723,0,-13.2407	0/1:14:6,8:6:212:8:282:-21.5067,0,-15.2104	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/1:17:7,10:7:237:10:360:-27.6268,0,-16.5415	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/0:14:14,0:14:486:0:0:0,-4.21442,-44.068	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:46:23,22:23:812:22:788:-57.3387,0,-59.495	0/1:11:3,8:3:104:8:288:-22.9561,0,-6.39148	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.5032	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:16:15,1:15:523:1:36:0,-1.2182,-43.8002	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.775	0/1:47:29,18:29:1036:18:644:-44.1422,0,-79.4055	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/1:22:10,12:10:356:12:432:-32.5985,0,-25.7586	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:60:37,23:37:1280:23:820:-56.0607,0,-97.436	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	.:.:.:.:.:.:.:.	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:17:11,6:11:383:6:216:-14.673,0,-29.6857	0/1:27:9,18:9:320:18:648:-50.5241,0,-21.0145	0/1:12:7,5:7:244:5:180:-12.9397,0,-18.6871	0/0:18:18,0:18:627:0:0:0,-5.41854,-56.7544	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.184	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:57:34,23:34:1207:23:828:-57.6854,0,-91.7766	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:38:20,18:20:716:18:648:-47.2127,0,-53.327	0/1:32:17,14:17:599:14:504:-36.1462,0,-44.6883	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:47:47,0:47:1653:0:0:0,-14.1484,-149.055	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:15:8,7:8:279:7:252:-18.5135,0,-20.9321	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:44:44,0:44:1556:0:0:0,-13.2453,-140.332	0/1:29:14,15:14:504:15:536:-39.8449,0,-36.9682	0/0:16:15,1:15:528:1:36:0,-1.2182,-44.2531	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:28:28,0:28:990:0:0:0,-8.42884,-89.4127	0/0:33:30,3:30:1044:3:104:0,-0.231185,-84.5641	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:39:16,23:16:567:23:820:-62.3823,0,-39.6206	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:27:17,10:17:608:10:360:-24.6165,0,-46.9242	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:20:20,0:20:699:0:0:0,-6.0206,-63.2325	0/0:43:43,0:43:1516:0:0:0,-12.9443,-136.73	0/1:23:13,10:13:464:10:356:-25.4576,0,-35.1738	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:39:16,23:16:572:23:824:-62.6733,0,-40.0733	0/1:32:19,13:19:675:13:468:-32.8267,0,-51.444	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9525	0/0:43:43,0:43:1526:0:0:0,-12.9443,-137.632	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:42:20,21:20:698:21:748:-54.9434,0,-50.4399	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:25:12,13:12:419:13:464:-34.5718,0,-30.5169	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:21:21,0:21:736:0:0:0,-6.32163,-66.5624	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474
chr04	31123773	.	T	A	72506.3	PASS	AB=0.424147;ABP=130.497;AC=142;AF=0.755319;AN=188;AO=3529;CIGAR=1X;DP=5019;DPB=5019;DPRA=0;EPP=7657.45;EPPR=3236.33;GTI=4;LEN=1;MEANALT=1.01064;MQM=48.7481;MQMR=59.6951;NS=94;NUMALT=1;ODDS=0.694394;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126485;QR=53293;RO=1489;RPL=3529;RPP=7666.14;RPPR=3236.33;RPR=0;RUN=1;SAF=3528;SAP=7657.45;SAR=1;SRF=1489;SRP=3236.33;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:19,31:19:680:31:1116:-85.1126,0,-46.4777	1/1:48:0,48:0:0:48:1720:-154.237,-14.4494,0	1/1:58:0,58:0:0:58:2088:-187.224,-17.4597,0	1/1:70:0,70:0:0:70:2512:-222.276,-21.0721,0	0/1:29:15,14:15:540:14:504:-35.9713,0,-40.2051	0/1:31:16,15:16:576:15:536:-38.5316,0,-42.8431	0/1:66:38,28:38:1356:28:1008:-70.3347,0,-102.469	1/1:54:0,54:0:0:54:1940:-174.429,-16.2556,0	1/1:28:0,28:0:0:28:996:-89.2534,-8.42884,0	1/1:30:0,30:0:0:30:1065:-95.3406,-9.0309,0	0/1:34:17,17:17:608:17:597:-42.9792,0,-44.8146	0/1:58:26,32:26:928:32:1148:-84.5629,0,-66.3785	1/1:58:0,58:0:0:58:2084:-186.034,-17.4597,0	1/1:63:0,63:0:0:63:2230:-200.23,-18.9649,0	1/1:41:0,41:0:0:41:1476:-131.934,-12.3422,0	0/1:38:21,17:21:756:17:612:-43.8255,0,-56.9281	0/1:41:21,20:21:748:20:712:-51.8993,0,-55.3027	1/1:38:0,38:0:0:38:1368:-123.105,-11.4391,0	0/1:16:9,7:9:324:7:252:-18.1489,0,-24.6894	0/1:85:52,33:52:1853:33:1188:-79.9095,0,-141.456	0/1:104:68,36:68:2432:36:1266:-81.6649,0,-187.829	0/1:64:48,16:48:1715:16:572:-31.7849,0,-135.366	1/1:31:0,31:0:0:31:1112:-98.5035,-9.33193,0	1/1:55:3,52:3:108:52:1868:-156.535,-6.48308,0	0/1:30:18,12:18:644:12:432:-30.0917,0,-49.2551	1/1:144:0,144:0:0:144:5172:-460.954,-43.3483,0	0/1:114:71,43:71:2534:43:1548:-104.237,0,-193.979	1/1:23:0,23:0:0:23:828:-74.6283,-6.92369,0	1/1:127:0,127:0:0:127:4568:-406.316,-38.2308,0	0/1:93:51,42:51:1836:42:1504:-106.55,0,-137.522	0/1:83:39,44:39:1392:44:1580:-115.878,0,-100.505	0/1:9:2,7:2:72:7:252:-20.2618,0,-4.12745	0/1:22:14,8:14:504:8:288:-19.5787,0,-39.0754	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	1/1:11:0,11:0:0:11:396:-35.8811,-3.31133,0	0/1:140:72,68:72:2575:68:2436:-174.514,0,-189.848	0/1:109:73,36:73:2612:36:1292:-83.2573,0,-202.431	1/1:35:0,35:0:0:35:1245:-111.839,-10.5361,0	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	1/1:50:3,47:3:108:47:1688:-139.963,-4.97633,0	0/1:21:10,11:10:360:11:396:-29.5707,0,-26.4227	0/1:88:61,27:61:2192:27:968:-60.5056,0,-171.051	0/1:33:17,16:17:593:16:576:-41.7682,0,-43.7584	1/1:39:0,39:0:0:39:1400:-124.849,-11.7402,0	1/1:27:0,27:0:0:27:972:-86.6875,-8.12781,0	1/1:71:1,70:1:36:70:2505:-220.864,-17.7749,0	0/1:87:47,40:47:1672:40:1440:-102.531,0,-124.382	0/1:87:58,29:58:2080:29:1025:-65.3917,0,-161.191	0/1:65:46,19:46:1644:19:654:-39.1246,0,-128.653	0/1:88:59,29:59:2116:29:1044:-65.8818,0,-164.102	0/1:10:5,5:5:180:5:180:-13.397,0,-13.5418	1/1:55:0,55:0:0:55:1968:-176.667,-16.5567,0	0/1:28:15,13:15:540:13:468:-33.6595,0,-40.4959	0/1:16:9,7:9:324:7:252:-18.1546,0,-24.6885	1/1:55:0,55:0:0:55:1967:-176.596,-16.5567,0	0/1:21:19,2:19:680:2:72:-0.455314,0,-55.0168	1/1:14:0,14:0:0:14:496:-44.6122,-4.21442,0	0/1:21:11,10:11:396:10:360:-25.5979,0,-29.6611	0/1:35:14,21:14:504:21:756:-57.6225,0,-35.1523	1/1:117:0,117:0:0:117:4204:-374.536,-35.2205,0	1/1:5:0,5:0:0:5:180:-16.4073,-1.50515,0	1/1:91:0,91:0:0:91:3272:-291.792,-27.3937,0	0/1:118:72,46:72:2588:46:1641:-110.496,0,-197.646	1/1:21:0,21:0:0:21:752:-67.8393,-6.32163,0	1/1:49:0,49:0:0:49:1764:-156.911,-14.7505,0	1/1:82:0,81:0:0:81:2912:-258.808,-24.3834,0	1/1:58:0,58:0:0:58:2060:-183.224,-17.4597,0	1/1:30:0,30:0:0:30:1068:-95.982,-9.0309,0	1/1:24:0,24:0:0:24:849:-76.5283,-7.22472,0	0/1:93:45,48:45:1616:48:1720:-125.626,0,-117.71	0/0:13:12,1:12:432:1:36:0,-0.346577,-35.6497	0/1:45:21,24:21:752:24:860:-63.964,0,-54.459	1/1:19:0,19:0:0:19:669:-60.3798,-5.71957,0	1/1:84:0,84:0:0:84:3009:-269.679,-25.2865,0	1/1:72:0,72:0:0:72:2588:-229.032,-21.6742,0	0/1:49:29,20:29:1040:20:720:-50.2034,0,-79.1429	1/1:42:1,41:1:36:41:1457:-127.467,-9.04499,0	0/1:14:4,10:4:140:10:360:-28.4476,0,-8.72792	0/1:60:45,15:45:1603:15:540:-30.7517,0,-125.784	0/1:57:32,25:32:1144:25:900:-63.7104,0,-86.0401	1/1:136:0,136:0:0:136:4896:-435.989,-40.9401,0	1/1:77:0,77:0:0:77:2743:-243.93,-23.1793,0	1/1:39:0,39:0:0:39:1400:-124.358,-11.7402,0	0/1:49:20,29:20:708:29:1040:-77.6006,0,-49.2951	0/1:98:44,54:44:1580:54:1936:-143.557,0,-112.984	1/1:29:0,29:0:0:29:1044:-94.021,-8.72987,0	1/1:53:0,53:0:0:53:1908:-171.265,-15.9546,0	1/1:44:0,44:0:0:44:1572:-140.499,-13.2453,0	1/1:28:0,28:0:0:28:1004:-90.2322,-8.42884,0	0/1:98:57,41:57:2040:41:1476:-103.076,0,-154.367	0/1:54:39,15:39:1396:15:540:-32.253,0,-109.683	1/1:56:0,56:0:0:56:2016:-179.394,-16.8577,0	1/1:66:0,66:0:0:66:2363:-210.05,-19.868,0
chr04	31128487	.	G	A	110829	PASS	AB=0.470917;ABP=25.3665;AC=140;AF=0.744681;AN=188;AO=5186;CIGAR=1X;DP=6813;DPB=6813;DPRA=24.663;EPP=11168.9;EPPR=3488.36;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9769;MQMR=60;NS=94;NUMALT=1;ODDS=2.45409;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185553;QR=58087;RO=1625;RPL=5175;RPP=11168.9;RPPR=3488.36;RPR=11;RUN=1;SAF=0;SAP=11264.3;SAR=5186;SRF=0;SRP=3531.65;SRR=1625;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:25,33:25:896:33:1184:-89.4086,0,-63.5006	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	1/1:140:0,140:0:0:140:4979:-448.259,-42.1442,0	1/1:171:0,171:0:0:171:6121:-550.988,-51.4761,0	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:26:16,10:16:576:10:360:-24.9175,0,-44.3482	0/1:79:42,36:42:1500:36:1296:-92.4519,0,-111.581	1/1:123:0,123:0:0:123:4390:-395.272,-37.0267,0	1/1:98:0,98:0:0:98:3516:-316.649,-29.5009,0	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	0/1:69:37,32:37:1324:32:1148:-82.8588,0,-98.691	0/1:135:63,72:63:2256:72:2581:-191.891,0,-162.664	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0	0/1:65:26,39:26:936:39:1400:-106.732,0,-64.9925	0/1:27:19,8:19:667:8:288:-18.1396,0,-52.2268	1/1:36:0,36:0:0:36:1294:-116.764,-10.8371,0	0/1:39:19,20:19:680:20:716:-53.0275,0,-49.789	0/1:100:50,50:50:1792:50:1762:-128.757,0,-131.459	0/1:126:62,64:62:2228:64:2281:-167.621,0,-162.854	0/1:56:35,21:35:1256:21:756:-51.5095,0,-96.4876	1/1:103:0,102:0:0:102:3639:-327.503,-30.7051,0	1/1:32:1,31:1:36:31:1108:-96.4327,-6.03469,0	0/1:72:36,36:36:1279:36:1292:-94.9096,0,-93.7383	1/1:137:0,137:0:0:137:4875:-438.903,-41.2411,0	0/1:167:96,71:96:3444:71:2542:-178.759,0,-259.9	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:162:0,162:0:0:162:5810:-523.012,-48.7669,0	0/1:67:39,28:39:1400:28:1004:-70.5069,0,-106.13	0/1:63:28,35:28:1008:35:1260:-94.7406,0,-72.0715	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:14:8,6:8:288:6:201:-14.2026,0,-22.053	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:205:102,103:102:3648:103:3687:-270.214,0,-266.814	0/1:77:47,30:47:1684:30:1080:-74.3339,0,-128.668	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:113:2,111:2:72:111:3957:-349.482,-27.1797,0	0/1:46:32,14:32:1144:14:496:-31.1269,0,-89.4221	0/1:71:30,41:30:1060:41:1464:-110.681,0,-74.3381	0/1:77:42,35:42:1499:35:1260:-90.5262,0,-112.025	1/1:73:0,73:0:0:73:2619:-235.957,-21.9752,0	1/1:104:1,103:1:36:103:3676:-327.444,-27.7088,0	1/1:84:0,84:0:0:84:3004:-270.556,-25.2865,0	0/1:150:78,72:78:2796:72:2566:-186.029,0,-206.725	0/1:67:32,35:32:1135:35:1256:-93.1763,0,-82.2891	0/1:127:70,57:70:2495:57:2023:-144.112,0,-186.572	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	0/1:5:1,4:1:36:4:139:-11.3471,0,-2.09312	1/1:93:0,93:0:0:93:3340:-300.816,-27.9958,0	0/1:72:28,44:28:992:44:1562:-119.197,0,-67.9202	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:94:2,92:2:72:92:3293:-289.752,-21.4601,0	0/1:25:7,18:7:248:18:644:-50.7648,0,-15.1384	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:14:11,3:11:392:3:108:-5.86075,0,-31.4056	0/1:60:35,25:35:1252:25:888:-62.1771,0,-94.9233	1/1:140:0,140:0:0:140:5002:-450.325,-42.1442,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:136:0,136:0:0:136:4872:-438.631,-40.9401,0	0/1:91:65,26:65:2317:26:936:-57.1657,0,-181.395	1/1:35:0,35:0:0:35:1237:-111.632,-10.5361,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:98:0,98:0:0:98:3506:-315.751,-29.5009,0	1/1:108:2,106:2:72:106:3792:-334.642,-25.6745,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:26:1,25:1:36:25:891:-76.9105,-4.22851,0	0/1:61:38,23:38:1348:23:816:-55.3989,0,-103.257	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	0/1:58:34,24:34:1216:24:860:-60.2621,0,-92.2868	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:89:0,89:0:0:89:3184:-286.784,-26.7917,0	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0	0/1:106:66,40:66:2347:40:1428:-96.9084,0,-179.58	1/1:69:0,69:0:0:69:2461:-221.744,-20.7711,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:49:26,23:26:932:23:828:-60.0936,0,-69.4484	0/1:92:52,40:52:1850:40:1436:-101.843,0,-139.084	1/1:118:0,118:0:0:118:4217:-379.709,-35.5215,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:85:0,85:0:0:85:3043:-274.099,-25.5876,0	0/1:52:23,29:23:828:29:1044:-78.6212,0,-59.1906	0/1:124:56,68:56:2012:68:2423:-180.998,0,-144.025	1/1:21:0,21:0:0:21:738:-66.7411,-6.32163,0	1/1:100:0,100:0:0:100:3592:-323.484,-30.103,0	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:98:42,56:42:1512:56:2010:-151.672,0,-106.874	0/1:83:55,28:55:1946:28:1000:-65.3299,0,-150.429	1/1:85:0,85:0:0:85:3038:-273.649,-25.5876,0	1/1:138:1,137:1:36:137:4907:-438.182,-37.9439,0
chr04	31128559	.	A	G	31586.4	PASS	AB=0.435808;ABP=156.341;AC=47;AF=0.252688;AN=186;AO=1889;CIGAR=1X;DP=10182;DPB=10182;DPRA=0.909948;EPP=4104.92;EPPR=17876.6;GTI=4;LEN=1;MEANALT=1.01695;MQM=53.6162;MQMR=47.6674;NS=93;NUMALT=1;ODDS=2.14875;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67036;QR=294668;RO=8291;RPL=1598;RPP=1966.7;RPPR=1838.09;RPR=291;RUN=1;SAF=1598;SAP=1966.7;SAR=291;SRF=5480;SRP=1868.72;SRR=2811;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:1,3:1:32:3:104:-8.49868,0,-1.99519	0/0:151:149,2:149:5296:2:72:0,-38.6188,-469.94	0/0:61:61,0:61:2160:0:0:0,-18.3628,-194.659	0/0:311:311,0:311:11122:0:0:0,-93.6203,-778.713	0/1:36:23,11:23:828:11:392:-25.0892,0,-61.2777	0/1:49:26,23:26:932:23:823:-59.6427,0,-69.4484	0/1:160:109,51:109:3884:51:1810:-106.834,0,-221.937	0/0:243:241,2:241:8588:2:72:0,-66.3136,-765.307	0/0:57:56,1:56:1990:1:36:0,-13.5604,-175.775	0/0:178:176,2:176:6256:2:63:0,-47.6002,-474.452	0/1:111:73,38:73:2578:38:1334:-82.85,0,-171.367	0/1:95:52,43:52:1847:43:1522:-108.674,0,-137.912	0/0:72:72,0:72:2528:0:0:0,-21.6742,-227.771	0/0:54:54,0:54:1890:0:0:0,-16.2556,-170.377	0/0:128:128,0:128:4542:0:0:0,-38.5318,-346.681	0/1:53:24,29:24:847:29:1032:-77.2389,0,-59.8101	0/1:86:49,37:49:1743:37:1296:-91.0506,0,-131.265	0/0:73:72,1:72:2535:1:36:0,-18.3769,-224.801	0/1:46:24,22:24:835:22:784:-57.0365,0,-61.6192	0/1:170:110,60:110:3928:60:2122:-134.62,0,-230.409	0/1:110:51,59:51:1832:59:2091:-155.346,0,-132.047	0/1:152:41,111:41:1434:111:3936:-203.498,0,-54.8854	0/0:169:169,0:169:6036:0:0:0,-50.8741,-410.993	0/0:27:27,0:27:968:0:0:0,-8.12781,-85.8792	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/0:452:452,0:452:15994:0:0:0,-136.066,-1259.01	0/1:111:65,46:65:2317:46:1627:-111.191,0,-175.374	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:325:324,1:324:11509:1:36:0,-94.2365,-893.883	0/1:123:64,59:64:2292:59:2098:-152.062,0,-169.515	0/1:158:112,46:112:3987:46:1652:-97.3143,0,-246.508	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:5,5:5:176:5:176:-13.1747,0,-13.1747	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:362:184,178:184:6514:178:6338:-339.75,0,-384.536	0/1:208:111,97:111:3920:97:3464:-249.35,0,-288.828	0/0:81:81,0:81:2866:0:0:0,-24.3834,-258.178	.:.:.:.:.:.:.:.	0/0:88:85,3:85:3052:3:108:0,-16.4155,-261.726	0/1:35:17,18:17:608:18:632:-46.6707,0,-44.516	0/1:17:8,9:8:284:9:320:-24.0248,0,-20.7858	0/1:125:80,45:80:2839:45:1584:-102.491,0,-185.006	0/0:125:125,0:125:4433:0:0:0,-37.6287,-339.407	0/0:143:143,0:143:5083:0:0:0,-43.0473,-340.106	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.768	0/1:212:128,84:128:4559:84:2983:-198.072,0,-292.869	0/1:114:78,36:78:2776:36:1271:-80.3747,0,-178.376	0/1:161:95,66:95:3398:66:2332:-160.31,0,-222.234	0/1:176:102,74:102:3635:74:2610:-107.711,0,-200.043	0/1:5:4,1:4:140:1:36:-2.09312,0,-8.99852	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/1:93:40,53:40:1418:53:1892:-88.7953,0,-77.6155	0/1:8:7,1:7:252:1:36:-1.19004,0,-19.8325	0/0:97:97,0:97:3436:0:0:0,-29.1999,-307.846	0/1:44:31,13:31:1084:13:464:-28.8522,0,-67.9367	0/0:17:17,0:17:591:0:0:0,-5.11751,-47.3073	0/1:13:6,7:6:208:7:252:-10.8642,0,-11.3212	0/1:65:34,31:34:1215:31:1103:-80.0119,0,-86.9752	0/0:177:176,1:176:6245:1:36:0,-49.684,-478.16	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.6983	0/0:286:286,0:286:10149:0:0:0,-86.0946,-778.078	0/1:152:102,50:102:3627:50:1786:-112.881,0,-227.526	0/0:56:55,1:55:1968:1:36:0,-13.2594,-172.242	0/0:137:137,0:137:4859:0:0:0,-41.2411,-378.503	0/0:236:236,0:236:8379:0:0:0,-71.0431,-632.088	0/0:161:160,1:160:5683:1:36:0,-44.8676,-379.403	0/0:26:26,0:26:923:0:0:0,-7.82678,-81.8284	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:137:56,81:56:1971:81:2886:-188.442,0,-119.587	0/1:18:10,8:10:360:8:288:-17.5907,0,-20.1218	0/1:25:15,10:15:532:10:360:-25.2186,0,-40.6873	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:141:141,0:141:5027:0:0:0,-42.4452,-449.259	0/0:185:185,0:185:6611:0:0:0,-55.6905,-488.896	0/1:85:39,46:39:1404:46:1615:-120.048,0,-101.072	0/0:128:124,4:124:4422:4:144:0,-25.2182,-384.834	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:73:37,36:37:1320:36:1283:-93.7974,0,-96.3486	0/1:68:33,35:33:1176:35:1237:-91.1623,0,-84.8992	0/0:266:266,0:266:9490:0:0:0,-80.074,-659.169	0/0:198:198,0:198:7020:0:0:0,-59.6039,-568.31	0/0:126:126,0:126:4447:0:0:0,-37.9298,-332.239	0/1:149:92,57:92:3229:57:1984:-132.614,0,-218.309	0/1:229:155,74:155:5474:74:2644:-161.769,0,-358.345	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:88:88,0:88:3120:0:0:0,-26.4906,-281.026	0/0:80:79,1:79:2791:1:36:0,-20.4841,-247.834	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/1:95:56,39:56:1991:39:1388:-96.6211,0,-149.597	0/1:103:45,58:45:1612:58:2054:-152.762,0,-89.6969	0/0:151:151,0:151:5385:0:0:0,-45.4555,-355.714	0/0:232:231,1:231:8208:1:36:0,-66.2407,-605.643
chr04	31201601	.	G	A	212124	PASS	AB=0.429949;ABP=285.943;AC=142;AF=0.755319;AN=188;AO=10117;CIGAR=1X;DP=13933;DPB=13933;DPRA=0;EPP=21971.8;EPPR=8276.32;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9947;MQMR=59.9979;NS=94;NUMALT=1;ODDS=0.190023;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=360940;QR=136491;RO=3814;RPL=10117;RPP=21971.8;RPPR=8285.01;RPR=0;RUN=1;SAF=10117;SAP=21971.8;SAR=0;SRF=3813;SRP=8276.32;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:29,27:29:1023:27:960:-69.8586,0,-75.5241	1/1:256:0,256:0:0:256:9151:-823.562,-77.0637,0	1/1:189:0,189:0:0:189:6769:-609.282,-56.8947,0	1/1:274:0,274:0:0:274:9786:-880.687,-82.4822,0	0/1:144:93,51:93:3328:51:1824:-121.093,0,-256.39	0/1:96:65,31:65:2327:31:1108:-71.1321,0,-180.79	0/1:184:101,83:101:3601:83:2936:-209.082,0,-268.906	1/1:217:0,217:0:0:217:7769:-699.239,-65.3235,0	1/1:179:0,179:0:0:179:6399:-576,-53.8844,0	1/1:141:0,141:0:0:141:5047:-454.376,-42.4452,0	0/1:59:30,29:30:1076:29:1032:-75.4327,0,-79.3921	0/1:90:46,44:46:1656:44:1575:-114.948,0,-122.236	1/1:104:0,104:0:0:104:3707:-333.833,-31.3071,0	1/1:90:1,89:1:36:89:3184:-283.186,-23.4944,0	1/1:84:0,84:0:0:84:2985:-268.882,-25.2865,0	0/1:98:46,52:46:1641:52:1829:-135.388,0,-118.476	0/1:81:45,36:45:1607:36:1266:-89.8571,0,-120.536	1/1:79:0,79:0:0:79:2811:-253.23,-23.7814,0	0/1:66:33,33:33:1180:33:1176:-86.2798,0,-86.6401	0/1:457:248,209:248:8884:209:7473:-535.042,0,-661.97	0/1:192:110,82:110:3924:82:2919:-205.147,0,-295.554	0/1:213:142,71:142:5100:71:2524:-163.293,0,-395.022	1/1:148:0,148:0:0:148:5241:-471.83,-44.5524,0	1/1:170:12,158:12:432:158:5649:-469.308,-11.9539,0	0/1:164:96,68:96:3448:68:2432:-169.767,0,-261.163	1/1:478:1,477:1:36:477:17013:-1527.22,-140.294,0	0/1:260:165,95:165:5924:95:3366:-224.887,0,-454.999	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:383:1,381:1:36:381:13636:-1223.43,-111.755,0	0/1:222:112,110:112:4000:110:3913:-285.535,0,-293.359	0/1:197:113,84:113:4060:84:3004:-211.289,0,-306.283	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:33:24,9:24:860:9:324:-19.5719,0,-67.7878	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:260:150,110:150:5353:110:3944:-276.884,0,-403.635	0/1:377:242,135:242:8628:135:4836:-321.906,0,-663.018	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:234:3,231:3:108:231:8271:-734.324,-60.3659,0	0/1:50:30,20:30:1080:20:716:-49.7162,0,-82.4618	0/1:193:102,91:102:3637:91:3235:-233.271,0,-269.435	0/1:111:59,52:59:2111:52:1856:-133.905,0,-156.844	1/1:91:0,91:0:0:91:3229:-290.832,-27.3937,0	1/1:195:0,195:0:0:195:6936:-624.277,-58.7009,0	1/1:175:0,175:0:0:175:6256:-563.133,-52.6803,0	0/1:316:184,132:184:6591:132:4697:-327.766,0,-498.144	0/1:119:62,57:62:2213:57:2028:-146.97,0,-163.61	0/1:222:126,96:126:4528:96:3424:-241.546,0,-340.857	0/1:334:175,159:175:6255:159:5650:-408.078,0,-462.501	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:231:0,231:0:0:231:8252:-742.693,-69.5379,0	0/1:86:47,39:47:1669:39:1396:-100.051,0,-124.607	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	1/1:173:0,173:0:0:173:6128:-551.626,-52.0782,0	0/1:80:52,28:52:1872:28:991:-65.4211,0,-144.677	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:36:29,7:29:1029:7:252:-12.1919,0,-82.0841	0/1:146:77,69:77:2764:69:2451:-176.895,0,-205.051	1/1:153:0,153:0:0:153:5464:-491.89,-46.0576,0	1/1:15:0,15:0:0:15:516:-46.7634,-4.51545,0	1/1:263:0,263:0:0:263:9399:-845.871,-79.1709,0	0/1:358:219,139:219:7841:139:4965:-339.23,0,-597.944	1/1:103:3,100:3:108:100:3575:-311.882,-20.9309,0	1/1:152:0,152:0:0:152:5437:-489.458,-45.7566,0	1/1:274:0,274:0:0:274:9772:-879.43,-82.4822,0	1/1:210:8,202:8:288:202:7208:-622.507,-36.9489,0	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	1/1:127:0,127:0:0:127:4511:-406.158,-38.2308,0	0/1:78:39,39:39:1404:39:1384:-101.378,0,-103.179	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	0/1:154:90,64:90:3216:64:2284:-159.463,0,-243.304	1/1:93:1,92:1:36:92:3266:-290.564,-24.3975,0	1/1:245:0,245:0:0:245:8739:-786.503,-73.7524,0	1/1:206:0,206:0:0:206:7378:-664.067,-62.0122,0	0/1:156:78,78:78:2800:78:2781:-203.569,0,-205.279	1/1:145:1,144:1:36:144:5099:-455.456,-40.0511,0	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/1:201:108,93:108:3876:93:3285:-235.364,0,-288.527	0/1:175:107,68:107:3836:68:2444:-167.534,0,-292.756	1/1:375:0,375:0:0:375:13415:-1207.14,-112.886,0	1/1:122:0,122:0:0:122:4358:-392.395,-36.7257,0	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	0/1:107:59,48:59:2112:48:1712:-122.156,0,-158.139	0/1:165:82,82:82:2923:82:2880:-209.709,0,-213.576	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	1/1:117:0,117:0:0:117:4179:-376.292,-35.2205,0	1/1:88:0,88:0:0:88:3131:-282.017,-26.4906,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	0/1:96:45,51:45:1596:51:1823:-135.452,0,-115.031	0/1:107:73,34:73:2606:34:1224:-78.2568,0,-202.577	1/1:202:0,202:0:0:202:7209:-648.866,-60.8081,0	1/1:126:0,126:0:0:126:4520:-406.967,-37.9298,0
chr04	31266695	.	A	G	14850	PASS	AB=0.493996;ABP=3.58399;AC=47;AF=0.25;AN=188;AO=912;CIGAR=1X;DP=3519;DPB=3519;DPRA=1.09866;EPP=1931.62;EPPR=5549.51;GTI=0;LEN=1;MEANALT=1.01887;MQM=59.9507;MQMR=59.972;NS=94;NUMALT=1;ODDS=2.78351;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32249;QR=93090;RO=2606;RPL=906;RPP=1931.62;RPPR=5549.51;RPR=6;RUN=1;SAF=0;SAP=1983.39;SAR=912;SRF=0;SRP=5661.87;SRR=2606;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:7,8:7:252:8:280:-21.0051,0,-18.5135	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/1:36:15,21:15:523:21:748:-56.8082,0,-36.5614	0/1:53:30,23:30:1072:23:805:-56.8124,0,-80.8379	0/1:44:25,19:25:900:19:672:-47.5615,0,-68.0757	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.631	0/0:36:36,0:36:1271:0:0:0,-10.8371,-114.692	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:16:4,12:4:144:12:419:-33.2262,0,-8.49714	0/1:37:21,16:21:748:16:555:-39.1379,0,-56.5072	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:12:9,3:9:324:3:104:-6.09045,0,-25.8935	0/1:143:73,70:73:2616:70:2483:-180.589,0,-192.64	0/1:41:19,22:19:672:22:776:-57.8199,0,-48.4646	0/1:61:17,44:17:612:44:1564:-122.689,0,-37.0506	0/0:60:59,1:59:2120:1:36:0,-14.4635,-187.47	0/0:27:26,1:26:928:1:36:0,-4.52953,-80.2354	0/1:59:34,25:34:1216:25:880:-61.7569,0,-91.9858	0/0:97:97,0:97:3444:0:0:0,-29.1999,-310.173	0/1:49:23,26:23:811:26:923:-68.6363,0,-58.5595	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:56:31,25:31:1108:25:870:-61.7569,0,-83.1733	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.6504	0/1:18:12,6:12:424:6:212:-14.0063,0,-33.0779	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:8:4,4:4:144:4:136:-10.1673,0,-10.9054	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/1:74:39,35:39:1391:35:1231:-88.817,0,-103.212	0/1:40:18,22:18:648:22:780:-58.4818,0,-46.6107	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	0/1:125:62,63:62:2228:63:2208:-161.355,0,-163.155	0/1:16:10,6:10:360:6:208:-14.2426,0,-27.9278	0/1:20:15,5:15:536:5:180:-10.5315,0,-42.5542	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.347	0/1:94:45,49:45:1612:49:1743:-128.857,0,-117.073	0/1:51:18,33:18:618:33:1180:-91.1555,0,-40.5857	0/1:62:51,11:51:1816:11:392:-16.9562,0,-145.058	0/1:58:29,29:29:1035:29:1024:-75.0129,0,-76.0033	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:53:52,1:52:1860:1:36:0,-12.3563,-164.081	0/1:31:23,8:23:828:8:280:-16.2074,0,-65.5122	0/1:22:12,10:12:428:10:352:-25.3955,0,-32.2361	0/0:60:60,0:60:2151:0:0:0,-18.0618,-193.857	0/1:38:17,21:17:608:21:752:-56.5671,0,-43.6129	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/1:25:13,11:13:464:11:396:-28.4348,0,-34.5502	0/0:62:62,0:62:2202:0:0:0,-18.6639,-198.444	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:44:15,29:15:531:29:1027:-79.4969,0,-34.8766	0/0:19:18,1:18:648:1:36:0,-2.12129,-55.0513	0/0:47:46,1:46:1644:1:36:0,-10.5501,-144.28	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:54:19,35:19:680:35:1240:-95.6488,0,-45.2735	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.612	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:102:47,55:47:1679:55:1944:-144.531,0,-120.691	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:29:13,16:13:464:16:572:-43.0836,0,-33.3676	0/1:59:27,32:27:963:32:1131:-84.337,0,-69.2252	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.143	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:8:5,3:5:180:3:100:-6.9222,0,-14.1438	0/1:44:25,19:25:900:19:667:-47.1093,0,-68.0757	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:28:17,11:17:608:11:396:-27.5539,0,-46.6232	0/1:25:9,16:9:320:16:547:-42.0272,0,-21.6166	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/0:27:25,2:25:900:2:72:0,-1.29109,-74.4843
chr04	31266733	.	ATGA	ATGG,TAGG	309984	PASS	AB=0.651829,0.346189;ABP=1316.51,1351.02;AC=143,43;AF=0.768817,0.231183;AN=186;AO=12506,2301;CIGAR=3M1X,2X1M1X;DP=14843;DPB=14843;DPRA=0,1.01759;EPP=27159.4,4990.89;EPPR=9.52472;GTI=3;LEN=1,4;MEANALT=1.84946,2.36735;MQM=50.1033,41.5663;MQMR=53.6667;NS=93;NUMALT=2;ODDS=0.469082;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=446657,80970;QR=101;RO=3;RPL=0,0;RPP=27159.4,4999.57;RPPR=9.52472;RPR=12506,2301;RUN=1,1;SAF=12506,2300;SAP=27159.4,4990.89;SAR=0,1;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:110:0,72,38:0:0:72,38:2592,1321:-312.132,-103.777,-82.1029,-208.697,0,-197.258	1/1:114:0,114,0:0:0:114,0:4047,0:-356.933,-34.3174,0,-356.933,-34.3174,-356.933	1/1:214:0,214,0:0:0:214,0:7647,0:-673.896,-64.4204,0,-673.896,-64.4204,-673.896	1/1:334:0,333,0:0:0:333,0:11887,0:-1051.25,-100.243,0,-1051.25,-100.243,-1051.25	1/2:127:0,85,42:0:0:85,42:3044,1487:-361.555,-118.144,-92.5565,-243.758,0,-231.115	1/2:129:0,80,49:0:0:80,49:2863,1728:-364.689,-135.937,-111.855,-229.097,0,-214.346	1/2:170:0,109,61:0:0:109,61:3899,2128:-478.288,-168.217,-135.405,-310.414,0,-292.052	1/1:169:0,169,0:0:0:169,0:6029,0:-531.52,-50.8741,0,-531.52,-50.8741,-531.52	1/1:266:0,266,0:0:0:266,0:9503,0:-838.47,-80.074,0,-838.47,-80.074,-838.47	1/1:200:0,200,0:0:0:200,0:7162,0:-631.373,-60.206,0,-631.373,-60.206,-631.373	1/2:79:0,52,27:0:0:52,27:1840,968:-221.014,-76.3501,-60.6965,-145.009,0,-136.881	1/2:203:0,143,58:0:0:143,58:5114,2046:-570.958,-161.752,-118.705,-409.194,0,-391.734	1/1:195:0,195,0:0:0:195,0:6973,0:-617.605,-58.7009,0,-617.605,-58.7009,-617.605	1/1:145:0,144,0:0:0:144,0:5164,0:-457.948,-43.3483,0,-457.948,-43.3483,-457.948	1/1:204:1,203,0:1:36:203,0:7260,0:-638.459,-57.8118,0,-638.76,-61.1091,-641.698	1/2:106:0,75,31:0:0:75,31:2688,1080:-300.01,-85.7809,-63.2037,-214.572,0,-205.24	1/2:54:0,38,16:0:0:38,16:1356,567:-154.308,-45.2709,-33.8318,-109.384,0,-104.568	1/1:105:0,105,0:0:0:105,0:3759,0:-332.791,-31.6082,0,-332.791,-31.6082,-332.791	1/2:44:0,28,16:0:0:28,16:1000,575:-125.99,-45.5295,-37.1006,-80.8099,0,-75.9934	1/2:906:0,636,269:0:0:636,269:22675,9526:-2566.77,-749.06,-557.605,-1817.72,0,-1736.74	1/2:164:1,124,37:1:36:124,37:4428,1262:-451.627,-95.7626,-61.3727,-353.263,0,-345.062	1/2:95:0,49,46:0:0:49,46:1760,1631:-268.943,-129.547,-114.797,-139.743,0,-125.896	1/1:303:0,297,5:0:0:297,5:10592,174:-941.756,-89.4059,0,-927.975,-75.5439,-926.47	1/1:171:0,164,5:0:0:164,5:5859,179:-519.457,-49.3689,0,-505.273,-35.138,-503.768	1/2:206:0,112,94:0:0:112,94:4020,3289:-577.224,-259.339,-225.624,-318.228,0,-289.932	1/1:428:0,428,0:0:0:428,0:15332,0:-1354.91,-128.841,0,-1354.91,-128.841,-1354.91	1/2:292:0,168,124:0:0:168,124:5980,4365:-817.321,-342.71,-292.137,-474.954,0,-437.626	1/1:75:0,75,0:0:0:75,0:2640,0:-234.822,-22.5773,0,-234.822,-22.5773,-234.822	1/1:353:0,353,0:0:0:353,0:12607,0:-1111.82,-106.264,0,-1111.82,-106.264,-1111.82	1/2:129:0,98,31:0:0:98,31:3497,1087:-366.742,-86.4054,-56.9044,-280.681,0,-271.349	1/2:130:0,93,37:0:0:93,37:3313,1291:-366.06,-99.9871,-71.9913,-266.411,0,-255.273	.:.:.:.:.:.:.:.	1/2:3:0,2,1:0:0:2,1:72,36:-8.90447,-3.20167,-2.59961,-6.05307,0,-5.75204	1/1:5:0,5,0:0:0:5,0:180,0:-16.2003,-1.50515,0,-16.2003,-1.50515,-16.2003	1/1:2:0,2,0:0:0:2,0:72,0:-6.65513,-0.60206,0,-6.65513,-0.60206,-6.65513	1/1:18:0,18,0:0:0:18,0:644,0:-57.8497,-5.41854,0,-57.8497,-5.41854,-57.8497	1/2:343:0,217,123:0:0:217,123:7783,4316:-963.218,-338.968,-273.645,-624.292,0,-587.265	1/2:106:0,77,29:0:0:77,29:2760,1013:-301.148,-79.8071,-56.6278,-221.683,0,-212.953	1/1:73:0,71,0:0:0:71,0:2529,0:-223.83,-21.3731,0,-223.83,-21.3731,-223.83	1/1:1:0,1,0:0:0:1,0:36,0:-3.54852,-0.30103,0,-3.54852,-0.30103,-3.54852	1/1:327:0,315,6:0:0:315,6:11255,210:-995.871,-94.8245,0,-979.219,-78.1439,-977.413	1/2:41:0,28,13:0:0:28,13:1008,455:-117.402,-36.3494,-27.9205,-81.3985,0,-77.4851	1/2:308:0,184,123:0:0:184,123:6571,4374:-870.687,-344.812,-289.423,-526.001,0,-488.975	1/2:123:0,88,35:0:0:88,35:3137,1235:-349.894,-97.3209,-70.8303,-252.917,0,-242.381	1/2:89:0,58,31:0:0:58,31:2068,1110:-254.363,-88.3059,-70.8462,-166.406,0,-157.074	1/1:193:0,193,0:0:0:193,0:6890,0:-608.24,-58.0988,0,-608.24,-58.0988,-608.24	1/1:172:0,172,0:0:0:172,0:6105,0:-538.476,-51.7772,0,-538.476,-51.7772,-538.476	1/2:249:0,159,90:0:0:159,90:5700,3161:-708.303,-250.574,-202.71,-458.076,0,-430.983	1/2:140:0,95,45:0:0:95,45:3408,1584:-395.777,-125.095,-96.497,-271.027,0,-257.48	1/2:144:0,104,40:0:0:104,40:3698,1401:-407.885,-111.379,-80.0716,-296.85,0,-284.809	1/2:155:0,116,39:0:0:116,39:4164,1367:-440.242,-108.006,-73.0861,-332.58,0,-320.84	1/1:3:0,3,0:0:0:3,0:108,0:-9.89676,-0.90309,0,-9.89676,-0.90309,-9.89676	1/1:173:0,172,1:0:0:172,1:6135,36:-542.268,-51.7772,0,-539.417,-48.5755,-539.116	1/2:79:0,49,30:0:0:49,30:1730,1057:-221.123,-83.0337,-68.2832,-138.432,0,-129.401	1/2:9:0,3,6:0:0:3,6:93,213:-24.6114,-17.2311,-16.328,-7.70048,0,-5.8943	1/1:204:0,203,0:0:0:203,0:7265,0:-638.92,-61.1091,0,-638.92,-61.1091,-638.92	1/2: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chr04	31266743	.	A	G	93311.1	PASS	AB=0.400113;ABP=1384.24;AC=93;AF=0.5;AN=186;AO=6383;CIGAR=1X;DP=15962;DPB=15962;DPRA=19.4676;EPP=13466.8;EPPR=12224.6;GTI=8;LEN=1;MEANALT=1.04396;MQM=41.4802;MQMR=51.4666;NS=93;NUMALT=1;ODDS=2.09845;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227689;QR=342417;RO=9575;RPL=41;RPP=13509.7;RPPR=20500.6;RPR=6342;RUN=1;SAF=6378;SAP=13820.1;SAR=5;SRF=8492;SRP=12452;SRR=1083;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:109:74,35:74:2656:35:1248:-76.9411,0,-200.879	0/1:116:46,70:46:1637:70:2516:-184.164,0,-112.562	0/1:214:87,127:87:3075:127:4483:-325.734,0,-211.972	0/1:331:165,166:165:5864:166:5944:-417.995,0,-427.866	0/1:127:81,46:81:2889:46:1656:-106.165,0,-218.55	0/1:126:90,36:90:3206:36:1276:-72.9303,0,-245.567	0/1:172:107,65:107:3836:65:2292:-147.803,0,-287.799	0/1:176:82,94:82:2936:94:3310:-235.843,0,-211.175	0/1:266:119,147:119:4261:147:5225:-374.601,0,-302.964	0/1:200:99,100:99:3552:100:3575:-248.972,0,-259.005	0/1:80:52,28:52:1864:28:1004:-61.4547,0,-140.893	0/1:206:130,76:130:4664:76:2713:-174.841,0,-352.329	0/1:195:107,88:107:3840:88:3156:-216.48,0,-286.315	0/1:149:80,69:80:2868:69:2472:-171.314,0,-213.441	0/1:206:98,108:98:3516:108:3871:-275.662,0,-253.856	0/1:106:69,37:69:2476:37:1311:-82.0871,0,-188.007	0/1:55:37,18:37:1328:18:644:-40.1255,0,-101.885	0/1:105:50,55:50:1792:55:1950:-138.831,0,-129.542	0/1:43:31,12:31:1116:12:428:-24.9226,0,-86.0133	0/1:910:617,293:617:22121:293:10455:-636.465,0,-1685.74	0/1:161:104,57:104:3736:57:2037:-129.558,0,-282.958	0/1:154:122,32:122:4341:32:1133:-51.9043,0,-273.813	0/1:302:181,121:181:6488:121:4302:-285.756,0,-491.943	0/1:175:107,68:107:3820:68:2409:-156.35,0,-290.611	0/1:205:132,73:132:4721:73:2555:-158.443,0,-353.942	0/1:614:408,206:408:14576:206:7383:-456.496,0,-1037.01	0/1:289:200,89:200:7123:89:3179:-188.409,0,-539.758	0/1:74:36,38:36:1296:38:1341:-95.5242,0,-94.6228	0/1:623:407,216:407:14540:216:7752:-487.248,0,-982.174	0/1:125:73,52:73:2620:52:1849:-124.218,0,-195.743	0/1:135:86,49:86:3065:49:1745:-112.602,0,-229.661	.:.:.:.:.:.:.:.	0/1:3:1,2:1:36:2:72:-5.75204,0,-2.59961	0/1:5:1,4:1:36:4:144:-11.4548,0,-2.09312	1/1:2:0,2:0:0:2:72:-6.65513,-0.60206,0	0/1:18:14,4:14:504:4:144:-7.54145,0,-40.1846	0/1:521:427,94:427:15272:94:3348:-133.855,0,-1016.8	0/1:107:63,44:63:2245:44:1567:-105.49,0,-166.922	0/1:73:37,36:37:1332:36:1284:-89.4054,0,-98.1623	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.54852	0/1:333:171,162:171:6094:162:5805:-404.726,0,-447.256	0/1:41:27,14:27:972:14:500:-31.8299,0,-74.3328	0/1:303:218,85:218:7790:85:3044:-173.693,0,-596.806	0/1:125:89,36:89:3184:36:1288:-75.5877,0,-245.255	0/1:91:67,24:67:2408:24:860:-47.6107,0,-186.914	0/1:268:139,128:139:4976:128:4565:-318.332,0,-328.854	0/1:168:74,94:74:2656:94:3364:-241.408,0,-188.533	0/1:253:179,74:179:6413:74:2601:-151.584,0,-492.814	0/1:143:84,59:84:3008:59:2105:-139.402,0,-223.393	0/1:139:85,54:85:3029:54:1910:-125.677,0,-228.032	0/1:233:157,76:157:5543:76:2721:-166.879,0,-340.641	0/1:3:1,2:1:36:2:72:-5.75204,0,-2.69518	0/1:175:85,90:85:3052:90:3211:-227.181,0,-222.006	0/1:144:122,22:122:4372:22:784:-24.3517,0,-267.212	0/1:9:8,1:8:288:1:36:-0.0269323,0,-23.0349	0/1:204:70,134:70:2512:134:4760:-353.801,0,-164.873	0/1:110:61,49:61:2169:49:1756:-117.286,0,-157.859	0/1:16:14,2:14:485:2:68:-1.51179,0,-33.4528	0/0:17:17,0:17:608:0:0:0,-5.11751,-44.5193	0/1:127:91,36:91:3256:36:1280:-74.3644,0,-249.438	0/1:163:85,78:85:3060:78:2785:-192.137,0,-226.199	1/1:4:0,4:0:0:4:144:-12.96,-1.20412,0	0/1:371:255,116:255:9101:116:4144:-250.509,0,-640.417	0/1:224:159,65:159:5688:65:2321:-133.83,0,-435.581	0/1:196:75,121:75:2654:121:4314:-317.666,0,-177.453	0/1:131:66,65:66:2360:65:2304:-162.889,0,-173.04	0/1:298:145,153:145:5173:153:5469:-385.816,0,-375.635	0/1:135:60,75:60:2144:75:2688:-194.138,0,-152.543	0/1:71:37,34:37:1317:34:1211:-84.42,0,-97.4118	0/1:49:34,15:34:1209:15:540:-32.8862,0,-94.228	0/1:124:99,25:99:3552:25:900:-41.1404,0,-244.149	0/1:29:16,13:16:557:13:460:-31.957,0,-41.0121	0/1:147:115,32:115:4093:32:1129:-54.289,0,-318.258	0/1:175:72,103:72:2550:103:3642:-264.292,0,-176.976	0/1:407:238,169:238:8536:169:5991:-398.747,0,-645.16	0/1:282:143,139:143:5120:139:4954:-348.831,0,-375.864	0/1:189:137,52:137:4889:52:1866:-106.47,0,-375.646	0/1:152:67,85:67:2404:85:3056:-221.595,0,-169.905	0/1:5:1,4:1:36:4:144:-11.1042,0,-2.09312	0/1:142:89,53:89:3196:53:1904:-119.938,0,-238.676	0/1:147:106,41:106:3792:41:1472:-85.038,0,-291.832	0/1:275:125,150:125:4484:150:5359:-384.371,0,-320.556	0/1:119:57,61:57:2052:61:2162:-152.463,0,-148.983	0/1:161:75,86:75:2666:86:3081:-219.446,0,-191.436	0/1:119:88,31:88:3160:31:1112:-61.9422,0,-244.238	0/1:267:187,80:187:6708:80:2880:-169.642,0,-515.141	0/1:57:26,31:26:936:31:1100:-79.389,0,-67.4008	0/1:171:83,88:83:2972:88:3160:-221.591,0,-215.968	0/1:168:91,76:91:3268:76:2720:-185.929,0,-243.528	0/1:65:39,26:39:1396:26:928:-62.0809,0,-106.322	0/1:91:63,28:63:2268:28:989:-57.2377,0,-172.258	0/1:142:111,31:111:3972:31:1112:-55.0185,0,-307.959	0/1:214:118,96:118:4209:96:3432:-234.46,0,-3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chr04	31266750	.	TAT	AAC,AAT	451447	PASS	AB=0.58676,0.410229;ABP=1392.63,1490.76;AC=95,93;AF=0.505319,0.494681;AN=188;AO=12478,8721;CIGAR=1X1M1X,1X2M;DP=21263;DPB=21263.7;DPRA=114.306,66.0124;EPP=27046.6,18923.1;EPPR=26.8965;GTI=9;LEN=3,1;MEANALT=2.49462,2.51087;MQM=45.453,41.5116;MQMR=36;NS=94;NUMALT=2;ODDS=3.39485;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=68,0;PQR=0;PRO=0;QA=431818,309918;QR=307;RO=11;RPL=6253,8709;RPP=3.14673,18836.3;RPPR=12.6832;RPR=6225,12;RUN=1,1;SAF=6259,8709;SAP=3.28874,18836.3;SAR=6219,12;SRF=2;SRP=12.6832;SRR=9;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:136:0,62,72:0:0:62,72:2107,2561:-365.894,-202.019,-183.355,-163.872,0,-142.198	1/2:205:0,136,69:0:0:136,69:4710,2449:-541.112,-193.465,-152.525,-347.982,0,-327.211	1/2:420:1,288,130:1:28:288,130:9883,4602:-1085.55,-360.723,-275.874,-723.367,0,-686.081	1/2:548:0,377,171:0:0:377,171:13098,6089:-1450.85,-480.239,-366.751,-970.947,0,-919.471	1/2:159:0,74,85:0:0:74,85:2611,3043:-435.502,-240.878,-218.602,-194.96,0,-169.372	1/2:135:0,53,82:0:0:53,82:1796,2887:-371.122,-227.793,-211.839,-143.665,0,-118.981	1/2:203:0,72,129:0:0:72,129:2455,4569:-546.689,-360.681,-339.007,-186.06,0,-147.227	1/2:321:1,225,93:1:28:225,93:7828,3273:-835.177,-256.265,-190.26,-577.515,0,-551.247	1/2:334:0,182,152:0:0:182,152:6340,5389:-918.076,-425.268,-370.481,-493.147,0,-447.391	1/2:279:0,174,103:0:0:174,103:6057,3626:-739.443,-285.438,-233.058,-454.02,0,-423.014	1/2:107:0,50,55:0:0:50,55:1730,1941:-282.344,-152.941,-137.89,-129.479,0,-112.923	1/2:268:0,129,137:0:0:129,137:4429,4890:-727.125,-386.67,-347.837,-340.489,0,-299.248	1/2:295:0,200,93:0:0:200,93:6934,3285:-786.897,-259.144,-198.938,-527.761,0,-499.765	1/2:229:0,158,70:0:0:158,70:5443,2485:-606.326,-196.612,-149.049,-409.785,0,-388.713	1/2:299:1,189,109:1:36:189,109:6558,3874:-791.875,-302.816,-248.859,-486.399,0,-456.525	1/2:147:0,80,67:0:0:80,67:2727,2388:-393.491,-188.823,-164.741,-205.001,0,-184.832	1/2:77:1,43,33:1:21:43,33:1485,1188:-204.805,-92.666,-81.1995,-111.098,0,-102.644	1/2:155:0,100,54:0:0:100,54:3449,1905:-411.604,-150.302,-120.199,-261.313,0,-245.057	1/2:63:0,36,27:0:0:36,27:1276,968:-172.447,-76.659,-65.8219,-96.1278,0,-88	1/2:1005:0,443,557:0:0:443,557:15375,19835:-2774.24,-1565.77,-1432.41,-1208.53,0,-1040.86	1/2:225:0,135,90:0:0:135,90:4619,3201:-598.63,-252.878,-212.239,-346.086,0,-318.994	1/2:123:0,45,78:0:0:45,78:1526,2780:-330.297,-220.02,-206.474,-110.597,0,-87.1166	1/2:401:0,275,126:0:0:275,126:9414,4504:-1075.97,-356.716,-273.933,-719.597,0,-681.667	1/2:213:0,141,71:0:0:141,71:4950,2487:-581.282,-196.052,-153.607,-385.337,0,-363.964	1/2:274:0,108,166:0:0:108,166:3667,5886:-735.161,-463.756,-431.245,-271.73,0,-221.759	1/2:630:0,426,202:0:0:426,202:14704,7161:-1675.91,-564.912,-436.673,-1111.06,0,-1050.25	1/2:361:0,148,210:0:0:148,210:5084,7445:-964.292,-586.585,-542.033,-377.746,0,-314.529	1/2:101:0,63,37:0:0:63,37:2192,1315:-272.083,-104.036,-85.0712,-168.07,0,-156.932	1/2:645:1,428,216:1:24:428,216:14840,7698:-1682.34,-606.918,-479.708,-1074.21,0,-1010.82	1/2:185:0,102,83:0:0:102,83:3518,2980:-496.124,-236.396,-205.691,-260.062,0,-235.077	1/2:190:0,106,83:0:0:106,83:3584,2952:-499.46,-233.422,-201.513,-266.177,0,-241.192	1/1:3:0,3,0:0:0:3,0:106,0:-8.49029,-0.90309,0,-8.49029,-0.90309,-8.49029	1/2:8:0,5,3:0:0:5,3:180,108:-21.1167,-8.90447,-7.39932,-12.5457,0,-11.6426	1/2:10:0,6,4:0:0:6,4:206,144:-26.7017,-11.7559,-9.94969,-15.2802,0,-14.0761	2/2:2:0,0,2:0:0:0,2:0,72:-6.65513,-6.65513,-6.65513,-0.60206,-0.60206,0	1/2:27:0,23,4:0:0:23,4:802,144:-73.5417,-11.7559,-4.83218,-62.1334,0,-60.9293	1/2:441:0,223,216:0:0:223,216:7784,7687:-1194.07,-606.321,-539.191,-587.834,0,-522.811	1/2:130:0,56,74:0:0:56,74:1972,2647:-360.685,-209.714,-192.856,-151.31,0,-129.034	1/2:135:0,98,36:0:0:98,36:3426,1276:-354.206,-100.431,-70.9304,-253.806,0,-242.969	1/1:4:0,4,0:0:0:4,0:144,0:-11.7587,-1.20412,0,-11.7587,-1.20412,-11.7587	1/2:441:0,271,168:0:0:271,168:9461,5962:-1189.54,-470.711,-389.132,-718.858,0,-668.285	1/2:55:0,28,27:0:0:28,27:974,972:-150.758,-77.338,-68.9092,-73.7574,0,-65.6296	1/2:384:0,174,209:0:0:174,209:6008,7442:-1038.4,-587.291,-534.912,-451.079,0,-388.164	1/2:164:0,96,68:0:0:96,68:3316,2428:-444.242,-192.41,-163.512,-252.169,0,-231.699	1/2:127:0,71,56:0:0:71,56:2429,1999:-342.169,-158.386,-137.012,-184.119,0,-167.261	1/2:272:0,148,124:0:0:148,124:5135,4431:-731.623,-350.805,-306.253,-381.152,0,-343.825	1/2:281:0,184,96:0:0:184,96:6438,3430:-748.816,-269.798,-214.409,-479.115,0,-450.216	1/2:316:0,155,161:0:0:155,161:5418,5761:-864.733,-456.026,-409.366,-409.044,0,-360.579	1/2:187:0,84,103:0:0:84,103:2891,3660:-504.865,-288.923,-263.637,-216.272,0,-185.266	1/2:190:0,96,94:0:0:96,94:3347,3341:-516.982,-264.661,-235.762,-252.657,0,-224.36	1/2:190:0,77,113:0:0:77,113:2673,3999:-518.602,-316.003,-292.824,-202.932,0,-168.915	1/2:6:0,4,2:0:0:4,2:129,72:-15.3998,-6.05307,-4.84895,-9.67829,0,-9.07623	1/2:324:0,234,90:0:0:234,90:8088,3184:-846.496,-251.226,-180.785,-595.333,0,-568.24	1/2:105:0,51,53:0:0:51,53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chr04	31266759	.	C	T	71654.9	PASS	AB=0.297492;ABP=7559.5;AC=91;AF=0.484043;AN=188;AO=6313;CIGAR=1X;DP=21250;DPB=21250;DPRA=27.7333;EPP=13711.5;EPPR=32410.1;GTI=17;LEN=1;MEANALT=1.1;MQM=41.461;MQMR=44.3454;NS=94;NUMALT=1;ODDS=1.44724;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225172;QR=531240;RO=14928;RPL=6300;RPP=13598.8;RPPR=527.027;RPR=13;RUN=1;SAF=6300;SAP=13598.8;SAR=13;SRF=8412;SRP=525.923;SRR=6516;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:133:99,34:99:3520:34:1203:-65.8269,0,-261.8	0/1:202:135,67:135:4815:67:2399:-148.082,0,-332.187	0/1:420:290,130:290:10352:130:4630:-275.63,0,-714.961	0/1:547:380,167:380:13561:167:5981:-356.147,0,-945.885	0/1:158:114,44:114:4079:44:1575:-89.7914,0,-296.968	0/1:136:100,36:100:3570:36:1262:-68.6643,0,-272.23	0/1:201:136,65:136:4844:65:2310:-141.21,0,-353.481	0/1:318:228,90:228:8104:90:3177:-178.746,0,-564.003	0/1:328:182,146:182:6443:146:5191:-353.374,0,-454.458	0/1:274:173,101:173:6170:101:3615:-230.502,0,-430.988	0/1:107:79,28:79:2824:28:995:-53.3023,0,-206.004	0/1:260:186,74:186:6610:74:2635:-151.881,0,-487.624	0/1:292:204,88:204:7246:88:3123:-185.895,0,-522.901	0/1:228:160,68:160:5694:68:2427:-142.459,0,-405.536	0/1:298:191,107:191:6744:107:3819:-243.044,0,-469.033	0/1:147:111,36:111:3928:36:1279:-66.8443,0,-287.59	0/1:73:56,17:56:2007:17:599:-30.7735,0,-148.209	0/1:151:99,52:99:3522:52:1863:-117.027,0,-249.919	0/1:65:53,12:53:1873:12:432:-18.6125,0,-138.762	0/1:986:701,285:701:24951:285:10211:-592.277,0,-1873.08	0/1:222:168,53:168:5991:53:1904:-99.6332,0,-433.701	0/1:152:121,31:121:4291:31:1116:-50.9344,0,-269.625	0/1:398:273,125:273:9720:125:4467:-271.636,0,-702.473	0/1:211:146,65:146:5146:65:2332:-138.706,0,-379.437	0/1:272:203,69:203:7230:69:2460:-130.899,0,-524.814	0/1:615:414,201:414:14754:201:7186:-439.424,0,-1044.83	0/1:353:264,89:264:9406:89:3190:-168.702,0,-685.394	0/1:98:61,37:61:2149:37:1328:-87.0373,0,-152.66	0/1:635:419,215:419:14993:215:7668:-477.387,0,-1013.36	0/1:183:133,50:133:4746:50:1779:-100.675,0,-338.934	0/1:188:139,49:139:4957:49:1730:-95.5117,0,-353.917	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.55271	0/1:8:6,2:6:216:2:68:-3.92002,0,-14.8025	0/1:10:6,4:6:216:4:144:-9.94969,0,-14.6048	1/1:2:0,2:0:0:2:72:-6.65513,-0.60206,0	0/1:27:23,4:23:824:4:144:-4.83218,0,-62.3978	0/1:524:434,90:434:15384:90:3216:-122.248,0,-1028.02	0/1:129:84,45:84:3008:45:1599:-101.709,0,-218.528	0/1:137:101,36:101:3579:36:1262:-68.3552,0,-253.488	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.7587	0/1:434:275,159:275:9780:159:5684:-363.82,0,-692.916	0/1:54:40,14:40:1432:14:504:-28.2287,0,-104.818	0/1:379:295,83:295:10512:83:2960:-143.322,0,-779.31	0/1:166:130,36:130:4646:36:1283:-62.8193,0,-343.842	0/1:125:100,24:100:3567:24:836:-36.0411,0,-266.076	0/1:268:144,124:144:5160:124:4440:-307.125,0,-343.573	0/1:279:187,91:187:6634:91:3244:-197.879,0,-461.217	0/1:313:242,71:242:8652:71:2543:-127.872,0,-640.288	0/1:185:126,59:126:4500:59:2093:-125.828,0,-321.919	0/1:191:137,54:137:4882:54:1932:-112.154,0,-355	0/1:235:160,75:160:5702:75:2679:-162.684,0,-352.509	0/1:5:3,2:3:104:2:72:-5.14998,0,-7.04018	0/1:325:238,87:238:8466:87:3082:-171.423,0,-591.207	0/1:146:123,23:123:4405:23:828:-27.2874,0,-269.358	0/0:10:10,0:10:352:0:0:0,-3.0103,-30.8841	0/1:303:170,133:170:6073:133:4759:-323.067,0,-403.39	0/1:148:98,50:98:3479:50:1780:-108.411,0,-245.904	0/1:17:15,2:15:521:2:72:-1.53762,0,-35.4951	0/0:17:17,0:17:612:0:0:0,-5.11751,-44.8807	0/1:146:110,36:110:3924:36:1273:-67.9532,0,-294.166	0/1:252:177,75:177:6273:75:2685:-156.508,0,-445.769	0/1:13:9,4:9:320:4:144:-9.0466,0,-20.9922	0/1:368:253,115:253:9063:115:4106:-248.164,0,-635.531	0/1:302:234,68:234:8309:68:2432:-120.144,0,-608.14	0/1:257:139,117:139:4943:117:4174:-287.308,0,-330.512	0/1:236:170,66:170:6057:66:2372:-136.716,0,-421.822	0/1:446:290,156:290:10281:156:5561:-348.474,0,-717.356	0/1:270:194,75:194:6916:75:2691:-153.64,0,-475.69	0/1:123:89,34:89:3141:34:1214:-69.0635,0,-218.468	0/1:80:64,16:64:2292:16:572:-26.3949,0,-167.833	0/1:127:101,26:101:3592:26:928:-42.7679,0,-246.421	0/1:42:30,12:30:1063:12:420:-24.5986,0,-76.3198	0/1:180:147,33:147:5229:33:1161:-47.2505,0,-394.572	0/1:252:154,98:154:5489:98:3465:-225.073,0,-381.737	0/1:516:346,170:346:12362:170:6052:-371.817,0,-899.994	0/1:513:372,140:372:13286:140:5019:-284.264,0,-922.149	0/1:277:225,52:225:8037:52:1847:-78.1356,0,-593.018	0/1:304:218,86:218:7744:86:3085:-177.152,0,-537.305	0/1:7:3,4:3:104:4:144:-10.5021,0,-6.91638	0/1:216:163,53:163:5801:53:1895:-97.8967,0,-414.837	0/1:197:156,41:156:5584:41:1464:-69.3655,0,-415.832	0/1:408:257,151:257:9122:151:5385:-345.378,0,-634.573	0/1:174:115,59:115:4069:59:2102:-130.005,0,-282.869	0/1:252:167,85:167:5938:85:3026:-186.887,0,-409.326	0/1:145:111,34:111:3919:34:1220:-63.388,0,-292.82	0/1:329:253,76:253:9020:76:2696:-135.531,0,-671.596	0/1:82:49,33:49:1738:33:1180:-79.0746,0,-120.5	0/1:259:173,86:173:6038:86:3076:-188.535,0,-428.708	0/1:247:170,77:170:5976:77:2704:-161.021,0,-427.815	0/1:116:90,26:90:3179:26:936:-47.3504,0,-227.291	0/1:151:121,29:121:4292:29:1011:-41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chr04	31269987	.	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chr04	31291131	.	A	C	40856	PASS	AB=0.487382;ABP=10.0248;AC=47;AF=0.25;AN=188;AO=2500;CIGAR=1X;DP=10837;DPB=10837;DPRA=1.0418;EPP=5423.01;EPPR=18009;GTI=3;LEN=1;MEANALT=1.04918;MQM=59.9032;MQMR=59.9974;NS=94;NUMALT=1;ODDS=0.455853;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88724;QR=296836;RO=8332;RPL=1;RPP=5423.01;RPPR=18009;RPR=2499;RUN=1;SAF=0;SAP=5431.69;SAR=2500;SRF=0;SRP=18095.7;SRR=8332;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:36,49:36:1280:49:1719:-129.396,0,-89.9157	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:180:180,0:180:6369:0:0:0,-54.1854,-573.302	0/0:233:233,0:233:8312:0:0:0,-70.14,-748.09	0/1:116:56,60:56:2004:60:2143:-158.218,0,-145.708	0/1:45:23,22:23:824:22:788:-57.6984,0,-60.937	0/1:99:45,54:45:1607:54:1891:-140.659,0,-115.117	0/0:318:317,1:317:11291:1:36:0,-92.1293,-1012.47	0/0:187:185,2:185:6570:2:72:0,-49.4559,-584.542	0/0:137:136,1:136:4858:1:32:0,-38.0418,-434.174	0/1:41:26,15:26:936:15:532:-35.8709,0,-72.2172	0/1:96:35,61:35:1219:61:2145:-164.412,0,-81.111	0/0:77:77,0:77:2703:0:0:0,-23.1793,-243.511	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.877	0/0:73:73,0:73:2587:0:0:0,-21.9752,-233.077	0/1:56:28,28:28:1000:28:1004:-73.8182,0,-73.4577	0/1:45:20,25:20:720:25:878:-65.7813,0,-51.5824	0/0:37:37,0:37:1308:0:0:0,-11.1381,-118.019	0/1:21:12,9:12:432:9:316:-22.4572,0,-32.8996	0/1:216:111,104:111:3953:104:3716:-269.648,0,-290.969	0/1:216:115,101:115:4080:101:3590:-258.095,0,-302.362	0/1:183:66,117:66:2347:117:4184:-321.523,0,-156.401	0/0:111:110,1:110:3948:1:36:0,-29.8161,-351.912	0/0:73:69,4:69:2475:4:140:0,-9.03061,-210.058	0/1:90:65,25:65:2318:25:885:-52.8677,0,-181.786	0/0:236:236,0:236:8444:0:0:0,-71.0431,-759.961	0/1:292:147,145:147:5271:145:5166:-377.17,0,-386.624	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:345:344,0:344:12317:0:0:0,-103.554,-1108.01	0/1:202:92,110:92:3287:110:3931:-293.172,0,-235.241	0/1:271:129,142:129:4578:142:5060:-373.966,0,-330.607	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:7:4,3:4:144:3:93:-6.56952,0,-11.2064	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:203:100,103:100:3570:103:3650:-267.597,0,-260.398	0/1:212:117,95:117:4134:95:3357:-238.523,0,-308.427	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.509	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:156:151,5:151:5377:5:180:0,-30.4086,-467.511	0/1:39:23,16:23:828:16:555:-38.5359,0,-63.1039	0/1:314:170,144:170:6032:144:5107:-365.252,0,-448.462	0/1:60:28,32:28:1004:32:1139:-84.7572,0,-72.6141	0/1:45:24,21:24:855:21:736:-53.0155,0,-63.7238	0/0:113:112,1:112:4007:1:36:0,-30.4181,-357.218	0/0:204:204,0:204:7285:0:0:0,-61.4101,-655.702	0/1:141:64,77:64:2273:77:2717:-202.329,0,-162.385	0/1:122:61,61:61:2172:61:2162:-158.12,0,-159.021	0/1:179:98,81:98:3512:81:2895:-206.901,0,-262.405	0/1:99:50,49:50:1792:49:1748:-127.802,0,-131.76	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/1:108:64,44:64:2274:44:1567:-108.809,0,-172.41	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:201:199,2:199:7042:2:68:0,-54.0493,-627.388	0/0:56:55,1:55:1980:1:36:0,-13.2594,-174.876	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:68:41,27:41:1449:27:956:-65.8857,0,-110.234	0/0:87:87,0:87:3101:0:0:0,-26.1896,-279.316	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:309:309,0:309:10999:0:0:0,-93.0183,-989.809	0/1:300:149,151:149:5246:151:5403:-396.091,0,-381.972	0/0:84:78,6:78:2776:6:208:0,-6.22744,-231.02	0/0:75:75,0:75:2656:0:0:0,-22.5772,-239.285	0/0:284:283,1:283:10059:1:36:0,-81.8942,-901.651	0/0:200:199,1:199:7092:1:36:0,-56.6077,-634.743	0/0:27:26,1:26:921:1:36:0,-4.52953,-79.6069	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3825	0/1:17:10,7:10:356:7:243:-17.0778,0,-27.2637	0/1:115:60,55:60:2152:55:1932:-139.536,0,-159.329	0/0:80:80,0:80:2854:0:0:0,-24.0824,-257.097	0/0:243:243,0:243:8630:0:0:0,-73.1503,-776.698	0/0:194:194,0:194:6912:0:0:0,-58.3998,-622.149	0/1:117:82,35:82:2920:35:1243:-76.9534,0,-227.813	0/0:114:113,1:113:4023:1:32:0,-31.1181,-359.058	0/1:15:2,13:2:72:13:449:-36.222,0,-2.32127	0/1:169:85,83:85:3052:83:2952:-215.065,0,-224.105	0/1:249:148,99:148:5284:99:3507:-241.199,0,-401.054	0/0:299:299,0:299:10688:0:0:0,-90.008,-961.828	0/0:63:63,0:63:2232:0:0:0,-18.9649,-201.142	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/1:46:19,27:19:680:27:951:-72.0569,0,-47.6818	0/1:139:78,61:78:2792:61:2153:-152.133,0,-209.677	0/0:28:28,0:28:987:0:0:0,-8.42884,-89.143	0/0:78:78,0:78:2755:0:0:0,-23.4803,-248.191	0/0:71:71,0:71:2510:0:0:0,-21.3731,-226.152	0/0:25:25,0:25:872:0:0:0,-7.52575,-78.7936	0/1:58:31,27:31:1099:27:935:-66.9937,0,-81.7597	0/1:90:31,59:31:1112:59:2086:-160.916,0,-73.2986	0/0:179:179,0:179:6358:0:0:0,-53.8844,-572.313	0/0:98:98,0:98:3515:0:0:0,-29.5009,-316.559
chr04	31291140	.	T	C	42813.8	PASS	AB=0.484926;ABP=13.0265;AC=47;AF=0.25;AN=188;AO=2488;CIGAR=1X;DP=10931;DPB=10931;DPRA=1.05401;EPP=4963.41;EPPR=16064.4;GTI=3;LEN=1;MEANALT=1.01667;MQM=59.9088;MQMR=59.9946;NS=94;NUMALT=1;ODDS=0.690525;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88544;QR=300746;RO=8442;RPL=2436;RPP=4963.41;RPPR=16064.4;RPR=52;RUN=1;SAF=0;SAP=5405.63;SAR=2488;SRF=0;SRP=18334.6;SRR=8442;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:87:37,50:37:1297:50:1780:-134.285,0,-90.8395	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.488	0/0:184:184,0:184:6557:0:0:0,-55.3895,-590.214	0/0:240:240,0:240:8548:0:0:0,-72.2472,-769.325	0/1:115:56,59:56:2008:59:2116:-156.09,0,-146.369	0/1:47:24,23:24:864:23:824:-60.3349,0,-63.9342	0/1:97:44,53:44:1553:53:1900:-142.078,0,-110.86	0/0:323:322,1:322:11470:1:36:0,-93.6344,-1028.58	0/0:189:187,2:187:6672:2:72:0,-50.0579,-593.72	0/0:136:135,1:135:4805:1:36:0,-37.3418,-429.009	0/1:40:25,15:25:896:15:540:-36.8953,0,-68.9192	0/1:93:35,58:35:1260:58:2057:-157.402,0,-85.7097	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:72:72,0:72:2555:0:0:0,-21.6742,-230.201	0/1:59:29,30:29:1040:30:1067:-78.5804,0,-76.1536	0/1:45:20,25:20:716:25:900:-67.7665,0,-51.2214	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:21:12,9:12:432:9:309:-21.8191,0,-32.8996	0/1:218:114,104:114:4048:104:3667:-264.609,0,-298.886	0/1:221:117,104:117:4148:104:3676:-264.484,0,-306.98	0/1:184:65,119:65:2312:119:4219:-324.481,0,-152.952	0/0:112:111,1:111:3964:1:36:0,-30.1171,-353.354	0/0:73:68,4:68:2416:4:144:0,-8.72037,-204.383	0/1:94:67,27:67:2404:27:964:-58.7782,0,-188.32	0/0:236:236,0:236:8371:0:0:0,-71.0431,-753.401	0/1:291:148,143:148:5259:143:5120:-373.333,0,-385.851	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:350:350,0:350:12423:0:0:0,-105.36,-1117.92	0/1:203:91,112:91:3256:112:3965:-295.93,0,-232.152	0/1:271:130,141:130:4640:141:5013:-369.739,0,-336.185	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:7:4,3:4:144:3:93:-6.56952,0,-11.2064	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:204:102,102:102:3644:102:3656:-267.834,0,-266.755	0/1:219:121,98:121:4315:98:3454:-245.142,0,-322.602	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:156:151,5:151:5392:5:176:0,-30.7757,-469.228	0/1:38:23,15:23:828:15:536:-37.1357,0,-63.405	0/1:316:171,145:171:6093:145:5147:-368.246,0,-453.348	0/1:58:27,31:27:972:31:1103:-82.1201,0,-70.3382	0/1:48:26,22:26:932:22:775:-55.6185,0,-69.7494	0/0:119:118,1:118:4220:1:36:0,-32.2243,-376.38	0/0:206:206,0:206:7320:0:0:0,-62.0122,-658.855	0/1:143:67,76:67:2396:76:2694:-199.657,0,-172.85	0/1:116:59,57:59:2096:57:2029:-147.961,0,-153.991	0/1:177:97,80:97:3445:80:2830:-201.656,0,-256.981	0/1:99:51,48:51:1820:48:1720:-125.284,0,-134.279	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/0:111:111,0:111:3884:0:0:0,-33.4143,-349.756	0/1:106:64,42:64:2266:42:1489:-102.392,0,-172.29	0/1:10:8,2:8:276:2:72:-3.82642,0,-22.1649	0/0:208:206,2:206:7338:2:72:0,-55.7775,-653.634	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:6:3,3:3:108:3:100:-7.52426,0,-8.26899	0/1:69:41,28:41:1460:28:1008:-70.2369,0,-110.925	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:312:312,0:312:11074:0:0:0,-93.9214,-996.562	0/1:298:148,150:148:5273:150:5360:-392.824,0,-385	0/0:88:82,6:82:2916:6:216:0,-6.70013,-242.886	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.202	0/0:284:283,1:283:10088:1:36:0,-81.8942,-904.262	0/0:201:200,1:200:7114:1:36:0,-56.9088,-636.723	0/0:27:26,1:26:924:1:36:0,-4.52953,-79.8794	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:32:17,15:17:612:15:536:-38.9419,0,-45.7805	0/1:18:11,7:11:392:7:243:-16.7768,0,-30.2015	0/1:114:59,55:59:2100:55:1954:-141.817,0,-154.952	0/0:82:82,0:82:2912:0:0:0,-24.6845,-262.317	0/0:245:245,0:245:8752:0:0:0,-73.7523,-787.673	0/0:199:199,0:199:7054:0:0:0,-59.905,-634.927	0/1:120:86,34:86:3072:34:1220:-73.9832,0,-240.586	0/0:118:117,1:117:4160:1:36:0,-31.9233,-370.988	0/1:15:2,13:2:72:13:464:-37.5821,0,-2.32127	0/1:166:86,80:86:3011:80:2855:-207.208,0,-221.245	0/1:243:146,97:146:5198:97:3464:-238.821,0,-394.808	0/0:302:302,0:302:10793:0:0:0,-90.9111,-971.275	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:44:19,25:19:684:25:886:-66.8127,0,-48.645	0/1:137:80,57:80:2848:57:2039:-142.481,0,-215.318	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:84:84,0:84:3000:0:0:0,-25.2865,-270.232	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:58:32,26:32:1144:26:932:-66.6941,0,-85.8098	0/1:86:28,58:28:1008:58:2080:-161.582,0,-65.1478	0/0:189:189,0:189:6729:0:0:0,-56.8947,-605.688	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169
chr04	31427072	.	C	T	1.6787e-11	PASS	AB=0.501949;ABP=3.62829;AC=97;AF=0.515957;AN=188;AO=9452;CIGAR=1X;DP=18814;DPB=18814;DPRA=0;EPP=20527.8;EPPR=20315;GTI=97;LEN=1;MEANALT=1.08511;MQM=10.6979;MQMR=11.4093;NS=94;NUMALT=1;ODDS=29.1734;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=330432;QR=331998;RO=9354;RPL=1;RPP=20519.1;RPPR=20288.9;RPR=9451;RUN=1;SAF=1;SAP=20519.1;SAR=9451;SRF=3;SRP=20288.9;SRR=9351;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:82:31,51:31:1103:51:1777:-25.6513,0,-7.51941	0/1:441:202,239:202:7164:239:8420:-90.5348,0,-60.2282	0/1:292:155,136:155:5492:136:4733:-38.2767,0,-59.7417	0/1:496:266,230:266:9432:230:7989:-59.7934,0,-100.856	0/1:169:84,85:84:3000:85:2935:-30.1456,0,-28.1567	0/1:115:50,64:50:1772:64:2256:-27.5409,0,-13.4365	0/1:231:92,139:92:3288:139:4860:-59.4393,0,-18.0469	0/1:333:118,215:118:4137:215:7510:-95.0547,0,-22.1926	0/1:206:82,124:82:2895:124:4262:-49.4683,0,-14.1115	0/1:126:75,51:75:2650:51:1795:-15.5272,0,-36.5853	0/1:120:61,59:61:2170:59:2095:-17.099,0,-23.4948	0/1:174:95,79:95:3336:79:2762:-26.6328,0,-42.8649	0/1:140:75,65:75:2657:65:2290:-16.3755,0,-34.3788	0/1:129:65,64:65:2297:64:2208:-18.7662,0,-29.0393	0/1:131:70,61:70:2467:61:2106:-17.8186,0,-24.572	0/1:111:44,67:44:1528:67:2341:-29.7665,0,-10.8061	0/1:149:82,67:82:2931:67:2340:-18.8612,0,-35.1697	0/1:119:60,59:60:2143:59:2070:-17.3011,0,-25.2466	0/1:89:46,43:46:1635:43:1483:-13.1039,0,-16.3643	0/1:435:210,225:210:7491:225:7905:-78.7383,0,-76.9385	0/1:331:187,144:187:6598:144:5055:-36.5257,0,-94.9207	0/1:167:62,105:62:2207:105:3661:-44.3656,0,-9.89042	0/1:303:176,126:176:6278:126:4419:-24.3067,0,-75.844	0/1:201:85,116:85:3044:116:4056:-46.5387,0,-18.6245	0/1:126:74,52:74:2632:52:1838:-13.4974,0,-37.8803	0/1:553:324,229:324:11548:229:7985:-46.0588,0,-147.298	0/1:454:248,206:248:8850:206:7192:-62.5557,0,-104.813	0/1:78:50,28:50:1763:28:966:-1.77464,0,-23.546	0/1:540:283,257:283:10065:257:8948:-81.4351,0,-108.325	0/1:228:125,102:125:4471:102:3560:-28.9559,0,-54.0094	0/1:225:105,120:105:3652:120:4208:-49.1491,0,-31.3447	0/1:18:8,10:8:271:10:351:-4.11837,0,-3.60554	0/1:37:10,27:10:351:27:944:-16.7479,0,-0.584378	0/1:16:5,11:5:172:11:392:-5.17237,0,-1.71306	1/1:22:7,15:7:248:15:532:-8.18575,-0.230288,0	0/1:37:20,17:20:712:17:591:-4.23666,0,-9.29379	0/1:406:193,213:193:6793:213:7448:-81.1415,0,-55.6232	0/1:263:124,139:124:4417:139:4858:-56.097,0,-39.2382	0/1:128:64,64:64:2292:64:2253:-19.0853,0,-21.451	1/1:8:1,7:1:36:7:248:-5.39335,-1.40922,0	0/1:331:191,140:191:6791:140:4904:-28.8884,0,-76.883	0/1:92:41,51:41:1419:51:1782:-19.9399,0,-15.7524	0/1:403:201,202:201:7131:202:7023:-73.6537,0,-85.5448	0/1:171:82,89:82:2893:89:3125:-31.3106,0,-24.7586	0/1:117:69,48:69:2439:48:1643:-8.16425,0,-29.4229	0/1:186:105,81:105:3708:81:2850:-19.2512,0,-40.4511	0/1:155:93,62:93:3303:62:2183:-9.16611,0,-39.3557	0/1:388:181,207:181:6448:207:7257:-72.0392,0,-51.1234	0/1:174:87,87:87:3067:87:3033:-32.3076,0,-35.2579	0/1:485:200,285:200:7139:285:10034:-113.304,0,-42.9948	0/1:290:149,141:149:5293:141:4933:-39.6093,0,-59.1593	0/1:20:7,13:7:248:13:456:-5.7638,0,-0.371772	0/1:248:126,122:126:4495:122:4260:-39.829,0,-47.9037	0/1:121:60,61:60:2129:61:2126:-18.5815,0,-30.328	0/0:27:19,8:19:684:8:280:0,-0.565075,-10.3426	0/1:331:171,160:171:6086:160:5604:-49.115,0,-75.1968	0/1:132:57,75:57:2024:75:2613:-31.5845,0,-15.9313	1/1:13:4,9:4:144:9:324:-4.49559,-0.217019,0	0/1:24:10,14:10:360:14:492:-5.4588,0,-1.86636	0/1:170:76,94:76:2708:94:3246:-39.0318,0,-29.494	0/1:190:101,88:101:3590:88:3119:-22.2083,0,-40.9203	1/1:19:5,14:5:180:14:500:-8.09072,-1.12408,0	0/1:408:198,210:198:7068:210:7339:-79.7243,0,-63.9316	0/1:360:180,179:180:6377:179:6242:-54.9371,0,-66.0622	0/1:132:76,56:76:2688:56:1972:-11.3051,0,-35.6849	0/1:265:121,144:121:4294:144:4985:-52.0289,0,-38.077	0/1:354:176,178:176:6277:178:6251:-60.4944,0,-56.0582	0/1:278:145,133:145:5144:133:4668:-44.9387,0,-46.7361	0/1:58:31,27:31:1116:27:937:-6.89536,0,-10.5128	0/1:154:77,77:77:2729:77:2712:-23.0432,0,-26.8304	0/1:171:87,83:87:3081:83:2919:-27.9893,0,-27.0029	0/1:32:14,18:14:491:18:632:-6.6457,0,-3.04712	0/1:143:66,77:66:2321:77:2688:-31.8111,0,-21.2273	0/1:113:62,51:62:2206:51:1795:-14.3557,0,-24.1575	0/1:363:169,193:169:6005:193:6678:-67.9532,0,-56.5917	0/1:373:190,183:190:6763:183:6400:-54.775,0,-70.4901	0/1:216:101,115:101:3611:115:4025:-45.6143,0,-31.8113	0/1:262:120,142:120:4259:142:4975:-49.8495,0,-34.4833	0/1:12:7,5:7:252:5:176:-1.34834,0,-3.14605	0/1:298:142,156:142:5096:156:5456:-64.0218,0,-51.1933	0/1:219:81,138:81:2859:138:4870:-69.18,0,-19.1989	0/1:462:230,232:230:8158:232:8064:-79.322,0,-76.7292	0/1:176:95,81:95:3372:81:2845:-19.9023,0,-38.7907	0/1:132:55,77:55:1945:77:2692:-36.2265,0,-13.6784	0/1:189:92,97:92:3234:97:3383:-33.0625,0,-30.7313	0/1:264:143,121:143:5040:121:4218:-38.9023,0,-60.5668	0/1:79:41,38:41:1453:38:1331:-10.4696,0,-15.4992	0/1:128:59,69:59:2073:69:2415:-31.3305,0,-14.5536	0/1:125:67,58:67:2368:58:2025:-16.9335,0,-27.3595	0/1:84:48,36:48:1690:36:1267:-7.16884,0,-31.5924	0/1:126:58,68:58:2040:68:2362:-32.2369,0,-24.9191	0/1:106:61,45:61:2175:45:1583:-8.72516,0,-23.0268	0/1:235:122,113:122:4349:113:3948:-32.8894,0,-41.3562	0/1:181:91,90:91:3197:90:3150:-28.8278,0,-35.9362
chr04	31427084	.	T	C	3370.05	PASS	AB=0.493206;ABP=10.6523;AC=91;AF=0.484043;AN=188;AO=9414;CIGAR=1X;DP=19110;DPB=19110;DPRA=0;EPP=20445.3;EPPR=21046.7;GTI=150;LEN=1;MEANALT=1.05319;MQM=11.6202;MQMR=10.7198;NS=94;NUMALT=1;ODDS=26.4619;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=335512;QR=347469;RO=9691;RPL=1;RPP=20436.6;RPPR=21029.4;RPR=9413;RUN=1;SAF=1;SAP=20436.6;SAR=9413;SRF=2;SRP=21029.4;SRR=9689;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:55,31:55:1976:31:1096:-6.3149,0,-28.2533	0/1:443:242,200:242:8708:200:7157:-57.6582,0,-91.3718	0/1:299:137,162:137:4913:162:5791:-69.4165,0,-42.6983	0/1:502:239,262:239:8538:262:9350:-92.6008,0,-67.1925	0/1:174:86,88:86:3088:88:3145:-30.5863,0,-29.9905	0/1:114:63,51:63:2264:51:1836:-17.3157,0,-26.9263	0/1:232:142,90:142:5112:90:3217:-15.927,0,-62.8858	0/1:335:218,117:218:7817:117:4156:-17.04,0,-97.6541	0/1:210:126,84:126:4516:84:3020:-19.4354,0,-52.499	0/1:129:54,75:54:1932:75:2645:-34.3412,0,-17.479	0/1:122:60,62:60:2156:62:2197:-23.7856,0,-17.4099	0/1:170:79,91:79:2824:91:3227:-40.0868,0,-28.1373	0/1:147:67,80:67:2404:80:2845:-40.9228,0,-16.0867	0/1:130:65,65:65:2340:65:2306:-26.4211,0,-19.4985	0/1:134:65,69:65:2340:69:2468:-21.7957,0,-20.5478	0/1:113:68,45:68:2440:45:1582:-13.4615,0,-30.1869	0/1:152:70,82:70:2497:82:2920:-34.3324,0,-20.7508	0/1:123:60,63:60:2156:63:2247:-27.9033,0,-17.0189	0/1:89:43,46:43:1544:46:1648:-16.2835,0,-13.1387	0/1:447:231,216:231:8300:216:7691:-79.6837,0,-80.9699	0/1:335:148,187:148:5297:187:6675:-98.7885,0,-39.028	0/1:175:112,63:112:4020:63:2244:-8.74296,0,-48.5655	0/1:301:126,175:126:4512:175:6247:-73.8129,0,-25.1121	0/1:206:119,87:119:4242:87:3105:-18.8927,0,-50.068	0/1:128:53,75:53:1904:75:2666:-39.1462,0,-13.9025	0/1:564:233,331:233:8349:331:11863:-150.663,0,-46.4423	0/1:462:210,252:210:7532:252:8970:-109.197,0,-62.1348	0/1:78:29,49:29:1036:49:1738:-23.0061,0,-2.69129	0/1:550:268,282:268:9583:282:10092:-105.742,0,-87.025	0/1:230:104,126:104:3728:126:4503:-53.9486,0,-30.2951	0/1:229:125,104:125:4484:104:3684:-33.4595,0,-55.0041	0/1:18:10,8:10:356:8:284:-4.06405,0,-4.12491	0/1:37:27,10:27:968:10:347:-0.583033,0,-16.7571	0/1:17:11,6:11:396:6:216:-2.56663,0,-4.87268	0/0:23:16,7:16:576:7:252:0,-0.529966,-9.17649	0/1:37:17,20:17:612:20:716:-9.29513,0,-4.24679	0/1:409:214,195:214:7676:195:6899:-58.6107,0,-80.9044	0/1:267:142,125:142:5100:125:4440:-37.9793,0,-61.2401	0/1:131:65,66:65:2328:66:2337:-23.8671,0,-19.1036	0/0:8:7,1:7:252:1:36:0,-1.40922,-5.3947	0/1:336:147,189:147:5280:189:6745:-75.1679,0,-33.7306	0/1:92:52,40:52:1868:40:1414:-14.8427,0,-20.9567	0/1:424:211,213:211:7572:213:7592:-96.1739,0,-75.9998	0/1:175:92,83:92:3300:83:2913:-22.1486,0,-32.9259	0/1:120:50,70:50:1792:70:2486:-31.6762,0,-9.37902	0/1:189:84,105:84:3012:105:3760:-39.9477,0,-21.2492	0/1:155:61,93:61:2188:93:3322:-44.6249,0,-8.48502	0/1:392:212,180:212:7589:180:6426:-51.3841,0,-75.4631	0/1:177:91,86:91:3272:86:3072:-33.504,0,-36.0217	0/1:495:292,203:292:10480:203:7272:-47.8837,0,-116.322	0/1:292:145,147:145:5204:147:5204:-54.0957,0,-42.9249	0/1:18:12,6:12:428:6:216:-0.0760663,0,-5.46943	0/1:248:126,122:126:4509:122:4361:-39.7801,0,-43.738	0/1:122:61,61:61:2184:61:2184:-32.2779,0,-18.2164	0/1:28:9,19:9:324:19:684:-9.47646,0,-0.0356816	0/1:339:166,173:166:5964:173:6152:-73.6687,0,-54.6821	0/1:131:76,55:76:2716:55:1962:-14.79,0,-32.8162	0/1:14:9,5:9:324:5:180:-0.381069,0,-3.97754	0/1:26:15,11:15:540:11:396:-2.16341,0,-5.75988	0/1:173:95,78:95:3416:78:2768:-32.4345,0,-39.5839	0/1:190:88,102:88:3156:102:3622:-43.6007,0,-22.0225	0/0:18:13,5:13:468:5:180:0,-0.823051,-7.19294	0/1:421:222,199:222:7960:199:7132:-68.3019,0,-89.4664	0/1:365:183,182:183:6580:182:6499:-69.5793,0,-59.6208	0/1:135:58,77:58:2088:77:2737:-37.0657,0,-12.2391	0/1:272:147,125:147:5271:125:4481:-40.9654,0,-55.0621	0/1:356:182,174:182:6521:174:6226:-55.2198,0,-63.5611	0/1:285:139,146:139:4996:146:5220:-45.5655,0,-48.3776	0/1:60:28,32:28:1008:32:1132:-13.699,0,-7.21339	0/1:153:76,77:76:2721:77:2745:-26.6051,0,-22.6187	0/1:174:88,85:88:3130:85:2988:-26.2838,0,-31.7898	0/1:33:18,15:18:648:15:524:-3.64731,0,-6.35002	0/1:142:80,62:80:2867:62:2188:-15.7565,0,-32.7788	0/1:115:52,63:52:1872:63:2260:-26.4517,0,-14.8496	0/1:377:203,173:203:7261:173:6189:-59.9551,0,-75.7137	0/1:379:188,191:188:6729:191:6848:-74.3859,0,-55.1891	0/1:220:119,101:119:4256:101:3601:-35.2537,0,-48.2294	0/1:266:146,120:146:5256:120:4260:-35.065,0,-53.9973	0/1:13:5,8:5:180:8:273:-3.71695,0,-1.04906	0/1:305:159,146:159:5708:146:5243:-52.6781,0,-65.3097	0/1:225:143,82:143:5112:82:2922:-17.703,0,-74.5977	0/1:467:239,228:239:8552:228:8078:-76.678,0,-87.4535	0/1:173:81,92:81:2908:92:3262:-37.7304,0,-20.8476	0/1:135:80,55:80:2856:55:1964:-13.2366,0,-38.0508	0/1:194:102,92:102:3653:92:3220:-29.2153,0,-36.0838	0/1:262:120,142:120:4292:142:5019:-62.6371,0,-36.3186	0/1:81:39,42:39:1400:42:1508:-15.8236,0,-13.1267	0/1:124:68,56:68:2440:56:1996:-15.4601,0,-30.9166	0/1:126:59,67:59:2120:67:2396:-29.2454,0,-17.5604	0/1:87:37,50:37:1328:50:1774:-31.6461,0,-7.1763	0/1:125:63,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chr04	31439595	.	C	T	651.746	PASS	AB=0.491192;ABP=15.1745;AC=96;AF=0.510638;AN=188;AO=8913;CIGAR=1X;DP=18127;DPB=18127;DPRA=0;EPP=19322.6;EPPR=20000.1;GTI=92;LEN=1;MEANALT=1.05319;MQM=11.0323;MQMR=11.0016;NS=94;NUMALT=1;ODDS=108.411;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=316597;QR=327788;RO=9209;RPL=8903;RPP=19270.6;RPPR=19991.4;RPR=10;RUN=1;SAF=8899;SAP=19235.9;SAR=14;SRF=9208;SRP=19991.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:14,13:14:495:13:449:-4.98289,0,-5.8183	0/1:325:168,157:168:5975:157:5537:-58.1561,0,-69.6087	0/1:236:118,118:118:4212:118:4210:-48.1555,0,-46.2449	0/1:385:185,200:185:6591:200:7125:-81.5832,0,-66.8301	0/1:122:66,56:66:2357:56:1979:-18.7099,0,-28.7111	0/1:104:46,57:46:1636:57:1993:-25.8317,0,-15.0115	0/1:305:132,173:132:4727:173:6147:-78.555,0,-38.2721	0/1:315:152,163:152:5413:163:5744:-68.7398,0,-56.0938	0/1:166:98,68:98:3496:68:2412:-17.515,0,-47.3528	0/1:232:131,101:131:4656:101:3578:-29.2734,0,-58.7185	0/1:183:98,85:98:3500:85:3007:-28.6576,0,-41.1102	0/1:184:86,98:86:3045:98:3470:-41.5063,0,-30.2671	0/1:200:97,103:97:3475:103:3675:-41.9182,0,-36.3462	0/1:143:83,59:83:2939:59:2086:-15.6622,0,-39.7224	0/1:158:76,82:76:2696:82:2885:-33.1178,0,-27.3746	0/1:143:73,70:73:2611:70:2491:-26.534,0,-29.2384	0/1:133:79,54:79:2814:54:1924:-13.6422,0,-38.7958	0/1:147:79,68:79:2832:68:2408:-23.1425,0,-34.422	0/1:115:56,59:56:1997:59:2091:-24.0844,0,-20.8327	0/1:419:192,227:192:6845:227:8085:-100.262,0,-63.409	0/1:278:147,131:147:5246:131:4680:-46.398,0,-61.7586	0/1:283:133,150:133:4694:150:5311:-62.4321,0,-45.4755	0/1:119:56,63:56:1988:63:2240:-26.4529,0,-19.2024	0/1:168:97,71:97:3447:71:2513:-19.7792,0,-45.5821	0/1:141:71,70:71:2531:70:2474:-26.6229,0,-27.8593	0/1:572:301,271:301:10749:271:9642:-96.642,0,-124.082	0/1:412:222,190:222:7902:190:6742:-66.454,0,-96.3422	0/1:99:58,41:58:2067:41:1472:-13.1053,0,-27.649	0/1:556:307,249:307:10950:249:8824:-77.1333,0,-135.161	0/1:280:151,129:151:5409:129:4610:-43.7156,0,-65.2809	0/1:340:152,188:152:5452:188:6660:-83.199,0,-47.1603	0/1:23:13,10:13:459:10:351:-3.06694,0,-6.03355	0/1:29:16,13:16:576:13:468:-4.23523,0,-7.20182	1/1:19:4,15:4:136:15:536:-9.50656,-0.285021,0	0/0:18:16,2:16:576:2:72:0,-3.33094,-13.8441	0/1:22:12,10:12:423:10:356:-3.4648,0,-5.34571	0/1:481:232,249:232:8280:249:8916:-99.7931,0,-83.1143	0/1:238:99,139:99:3511:139:4927:-65.9101,0,-26.6633	0/1:157:84,72:84:3012:72:2557:-24.8374,0,-36.5478	1/1:12:3,9:3:108:9:315:-6.01608,-0.535895,0	0/1:226:103,123:103:3670:123:4402:-53.9576,0,-34.4444	0/1:98:66,32:66:2356:32:1144:-2.24914,0,-36.2241	0/1:139:56,83:56:2008:83:2956:-42.5719,0,-13.6396	0/1:205:110,95:110:3924:95:3379:-31.7565,0,-47.3957	0/1:171:81,90:81:2861:90:3215:-37.1679,0,-28.4701	0/1:228:118,110:118:4223:110:3927:-39.2448,0,-47.6075	0/1:297:119,178:119:4238:178:6353:-87.3213,0,-29.0688	0/1:235:119,116:119:4211:116:4159:-43.5257,0,-47.5689	0/1:228:105,123:105:3763:123:4371:-52.6862,0,-35.0254	0/1:296:135,161:135:4744:161:5746:-70.0853,0,-43.5793	0/1:254:148,106:148:5249:106:3790:-27.918,0,-69.476	0/1:18:6,12:6:212:12:428:-6.646,0,-0.622773	0/1:209:114,95:114:4081:95:3348:-31.2167,0,-50.2474	0/1:81:37,44:37:1308:44:1546:-19.0763,0,-12.0031	0/1:39:20,19:20:703:19:680:-7.33681,0,-8.31557	0/1:171:89,82:89:3168:82:2932:-30.1605,0,-36.5137	0/1:56:33,23:33:1175:23:824:-5.7238,0,-15.605	0/1:25:8,17:8:288:17:603:-9.20629,0,-0.494968	0/1:39:19,20:19:680:20:690:-8.08004,0,-7.24612	0/1:114:51,63:51:1791:63:2221:-28.238,0,-16.4397	0/1:278:154,124:154:5480:124:4418:-38.3862,0,-68.1265	1/1:26:6,20:6:201:20:720:-13.7877,-1.81762,0	0/1:272:146,126:146:5176:126:4483:-42.1403,0,-62.1578	0/1:326:166,160:166:5869:160:5625:-59.382,0,-64.756	0/1:150:71,79:71:2538:79:2799:-33.3988,0,-25.1489	0/1:115:65,50:65:2317:50:1764:-14.6184,0,-29.4677	0/1:316:161,154:161:5751:154:5447:-56.7289,0,-63.3814	0/1:185:103,82:103:3679:82:2920:-24.9227,0,-45.9863	0/1:72:38,34:38:1364:34:1220:-11.9657,0,-16.0108	0/1:180:103,77:103:3695:77:2716:-22.0188,0,-48.127	0/1:189:97,92:97:3447:92:3236:-33.4876,0,-39.4396	0/1:37:16,21:16:568:21:744:-9.64252,0,-4.79014	0/1:114:70,44:70:2481:44:1562:-9.46492,0,-35.7008	0/1:152:85,67:85:2990:67:2391:-20.684,0,-38.9994	0/1:366:176,190:176:6224:190:6692:-80.4022,0,-64.5702	0/1:251:119,132:119:4244:132:4702:-54.7391,0,-42.2668	0/1:186:86,100:86:3026:100:3569:-43.5027,0,-29.6196	0/1:252:127,125:127:4533:125:4443:-48.7096,0,-51.1523	0/1:18:10,8:10:360:8:284:-2.60051,0,-4.67065	0/1:230:123,107:123:4382:107:3817:-36.7464,0,-52.4756	0/1:268:137,131:137:4842:131:4665:-49.4685,0,-55.8602	0/1:507:228,279:228:8122:279:9928:-122.116,0,-72.3315	0/1:215:99,116:99:3497:116:4085:-49.2719,0,-32.9316	0/1:161:85,76:85:3018:76:2724:-26.6128,0,-35.4918	0/1:203:117,86:117:4131:86:3047:-24.8262,0,-54.0003	0/1:294:170,124:170:6058:124:4411:-33.181,0,-78.6526	0/1:109:68,41:68:2429:41:1464:-7.92532,0,-34.5863	0/1:150:79,71:79:2806:71:2501:-25.3099,0,-33.5003	0/1:171:94,77:94:3347:77:2744:-24.752,0,-42.1914	0/1:116:59,57:59:2116:57:2017:-21.4424,0,-23.7095	0/1:203:103,100:103:3664:100:3527:-38.1494,0,-41.2507	0/1:172:99,73:99:3531:73:2612:-20.5129,0,-46.212	0/1:156:73,82:73:2586:82:2906:-34.0256,0,-25.1062	0/1:269:136,133:136:4835:133:4738:-50.5319,0,-53.1976
chr04	31439607	.	T	C	9.19583e-12	PASS	AB=0.508646;ABP=14.3506;AC=92;AF=0.489362;AN=188;AO=8911;CIGAR=1X;DP=17536;DPB=17536;DPRA=0;EPP=19344.3;EPPR=18625.6;GTI=92;LEN=1;MEANALT=1.12766;MQM=10.9955;MQMR=11.0363;NS=94;NUMALT=1;ODDS=174.872;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313071;QR=295576;RO=8612;RPL=8911;RPP=19353;RPPR=18643;RPR=0;RUN=1;SAF=8910;SAP=19344.3;SAR=1;SRF=8596;SRP=18565;SRR=16;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:12,15:12:386:15:536:-6.90364,0,-3.96834	0/1:319:158,161:158:5404:161:5650:-63.7127,0,-60.6092	0/1:231:115,115:115:3952:115:4034:-44.679,0,-46.8016	0/1:363:189,174:189:6426:174:6131:-61.96,0,-77.1364	0/1:113:52,61:52:1771:61:2128:-26.4203,0,-17.4363	0/1:97:54,43:54:1828:43:1495:-13.932,0,-24.5707	0/1:299:169,130:169:5742:130:4579:-38.0058,0,-76.4187	0/1:297:149,148:149:5049:148:5186:-57.5517,0,-60.8297	0/1:163:68,95:68:2273:95:3333:-45.2627,0,-18.3738	0/1:228:101,127:101:3451:127:4450:-56.0443,0,-30.1198	0/1:179:82,97:82:2860:97:3414:-41.2827,0,-28.347	0/1:182:101,81:101:3436:81:2871:-25.7563,0,-45.1194	0/1:195:100,95:100:3477:95:3351:-35.6256,0,-40.3769	0/1:137:57,80:57:1949:80:2777:-38.1569,0,-15.178	0/1:152:78,74:78:2674:74:2632:-27.1564,0,-30.9174	0/1:137:64,73:64:2193:73:2584:-31.0061,0,-22.1551	0/1:128:51,77:51:1778:77:2736:-37.7952,0,-12.1549	0/1:145:68,77:68:2378:77:2696:-32.8014,0,-23.7552	0/1:116:60,56:60:2101:56:1969:-20.5347,0,-24.752	0/1:402:214,187:214:7343:187:6546:-63.8447,0,-92.0332	0/1:261:119,141:119:4027:141:4891:-61.0141,0,-39.3787	0/1:282:152,130:152:5296:130:4526:-42.7092,0,-64.8802	0/1:111:60,51:60:2105:51:1810:-16.758,0,-25.902	0/1:160:68,92:68:2333:92:3247:-43.0678,0,-19.1856	0/1:134:63,71:63:2152:71:2455:-29.8873,0,-21.6181	0/1:555:260,294:260:8974:294:10326:-122.199,0,-90.9634	0/1:388:179,209:179:6063:209:7381:-90.1481,0,-62.1859	0/1:95:38,57:38:1340:57:2003:-27.8214,0,-10.9746	0/1:532:236,296:236:8080:296:10353:-131.371,0,-71.8513	0/1:275:124,151:124:4277:151:5286:-66.6964,0,-39.8634	0/1:325:180,145:180:6057:145:5093:-44.731,0,-79.5198	0/1:24:11,13:11:379:13:455:-5.73079,0,-3.75132	0/1:29:13,16:13:448:16:568:-7.19838,0,-4.2266	0/0:15:12,3:12:409:3:108:0,-1.43898,-8.86273	1/1:18:2,16:2:72:16:561:-13.8106,-3.33094,0	0/1:22:10,12:10:338:12:424:-5.35012,0,-3.44903	0/1:472:242,229:242:8411:229:8019:-82.9314,0,-95.7348	0/1:224:129,95:129:4421:95:3361:-26.761,0,-60.0735	0/1:147:66,81:66:2277:81:2836:-36.0622,0,-21.3207	0/0:12:9,3:9:298:3:108:0,-0.535895,-6.00423	0/1:217:121,96:121:4151:96:3398:-29.7722,0,-54.5688	0/1:94:32,62:32:1119:62:2199:-33.4638,0,-3.43856	0/1:134:81,53:81:2798:53:1862:-12.0658,0,-40.716	0/1:197:92,105:92:3250:105:3713:-44.5967,0,-31.2987	0/1:167:88,78:88:3079:78:2683:-26.7446,0,-36.6419	0/1:219:107,112:107:3689:112:3967:-44.1873,0,-38.9099	0/1:286:170,116:170:5855:116:4061:-29.4373,0,-82.4953	0/1:230:113,117:113:3895:117:4100:-46.9208,0,-42.1089	0/1:221:120,101:120:4131:101:3599:-33.258,0,-51.6344	0/1:284:158,126:158:5409:126:4371:-38.5407,0,-70.5512	0/1:247:105,141:105:3583:141:4964:-64.8095,0,-29.1821	0/1:16:10,6:10:347:6:192:-1.18473,0,-5.26091	0/1:202:88,114:88:2979:114:4067:-52.2818,0,-26.3817	0/1:81:44,36:44:1498:36:1275:-11.1437,0,-19.367	0/1:38:19,19:19:662:19:672:-7.63343,0,-7.53194	0/1:168:80,87:80:2692:87:3070:-35.6365,0,-29.1276	0/1:54:23,31:23:789:31:1094:-14.4016,0,-6.37438	0/1:26:18,8:18:627:8:284:-0.192203,0,-9.88941	0/1:38:19,19:19:676:19:669:-7.51587,0,-7.4557	0/1:108:62,46:62:2124:46:1613:-13.0561,0,-28.9062	0/1:269:121,148:121:4118:148:5197:-64.862,0,-38.1627	0/0:27:21,6:21:700:6:212:0,-2.0865,-14.6894	0/1:262:120,142:120:4195:142:4970:-60.9639,0,-39.2931	0/1:320:158,162:158:5453:162:5765:-62.7685,0,-59.0553	0/1:150:80,70:80:2718:70:2451:-25.6506,0,-34.2011	0/1:112:50,62:50:1660:62:2143:-27.337,0,-15.4302	0/1:307:151,153:151:5143:153:5420:-58.54,0,-57.0148	0/1:179:80,99:80:2779:99:3470:-43.7894,0,-24.734	0/1:71:34,37:34:1199:37:1288:-15.2749,0,-12.2534	0/1:174:73,101:73:2449:101:3561:-47.9649,0,-19.8873	0/1:181:90,91:90:3113:91:3208:-35.6397,0,-33.8227	0/1:36:20,16:20:692:16:550:-5.07546,0,-8.94816	0/1:106:38,68:38:1284:68:2370:-36.0621,0,-5.81558	0/1:146:65,81:65:2235:81:2848:-36.993,0,-20.5153	0/1:346:177,169:177:5984:169:5954:-63.304,0,-70.9012	0/1:244:128,116:128:4350:116:4018:-41.286,0,-52.6011	0/1:179:95,84:95:3284:84:2900:-29.5532,0,-40.5987	0/1:243:122,121:122:4201:121:4239:-47.0988,0,-48.5517	0/1:19:9,10:9:311:10:347:-4.35782,0,-3.28045	0/1:222:98,124:98:3338:124:4360:-55.8172,0,-30.1583	0/1:258:126,132:126:4412:132:4656:-53.4558,0,-47.3299	0/1:483:261,221:261:8929:221:7822:-72.606,0,-111.494	0/1:209:114,95:114:3947:95:3344:-30.8182,0,-48.9557	0/1:160:76,84:76:2599:84:2961:-34.7783,0,-26.8247	0/1:198:84,114:84:2894:114:3921:-52.4015,0,-23.223	0/1:289:125,164:125:4314:164:5782:-74.0305,0,-35.6894	0/1:108:41,67:41:1448:67:2378:-33.9177,0,-8.21996	0/1:154:76,78:76:2592:78:2738:-30.9345,0,-31.3025	0/1:168:77,91:77:2638:91:3218:-40.028,0,-25.5836	0/1:116:57,59:57:1990:59:2088:-23.6975,0,-21.4312	0/1:196:98,98:98:3356:98:3445:-38.1607,0,-38.27	0/1:169:71,98:71:2487:98:3452:-46.0062,0,-19.4706	0/1:151:80,71:80:2693:71:2457:-24.24,0,-33.1927	0/1:266:131,135:131:4490:135:4776:-52.852,0,-49.0214
chr04	31486881	.	GAG	GAA,AAA	182167	PASS	AB=0.487253,0.51033;ABP=9.43213,7.22725;AC=139,47;AF=0.747312,0.252688;AN=186;AO=6248,2333;CIGAR=2M1X,1X1M1X;DP=8599;DPB=8599;DPRA=0,1.1368;EPP=13544.3,5069.06;EPPR=5.18177;GTI=0;LEN=1,3;MEANALT=1.72043,2.16981;MQM=59.9864,59.976;MQMR=60;NS=93;NUMALT=2;ODDS=1.59431;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=222549,81864;QR=36;RO=1;RPL=6245,2333;RPP=13544.3,5069.06;RPPR=5.18177;RPR=3,0;RUN=1,1;SAF=6248,2333;SAP=13570.4,5069.06;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:37:0,14,23:0:0:14,23:496,800:-105.802,-65.3938,-61.1794,-40.7598,0,-33.8361	1/1:182:0,182,0:0:0:182,0:6486,0:-583.825,-54.7875,0,-583.825,-54.7875,-583.825	1/1:56:0,56,0:0:0:56,0:2008,0:-180.993,-16.8577,0,-180.993,-16.8577,-180.993	1/1:117:0,116,0:0:0:116,0:4139,0:-372.355,-34.9195,0,-372.355,-34.9195,-372.355	1/2:84:0,42,42:0:0:42,42:1504,1474:-242.969,-120.312,-107.668,-123.011,0,-110.368	1/2:96:0,40,55:0:0:40,55:1432,1876:-268.985,-152.199,-140.158,-116.777,0,-100.22	1/2:92:0,46,46:0:0:46,46:1624,1613:-263.861,-131.612,-117.764,-132.602,0,-118.754	1/1:191:0,191,0:0:0:191,0:6801,0:-612.165,-57.4967,0,-612.165,-57.4967,-612.165	1/1:63:0,63,0:0:0:63,0:2248,0:-202.584,-18.9649,0,-202.584,-18.9649,-202.584	1/1:111:0,111,0:0:0:111,0:3952,0:-355.874,-33.4143,0,-355.874,-33.4143,-355.874	1/2:50:0,30,20:0:0:30,20:1076,711:-146.062,-58.2963,-49.2654,-88.122,0,-82.1014	1/2:65:0,36,28:0:0:36,28:1288,975:-184.308,-79.2743,-68.4372,-105.027,0,-96.5979	1/1:57:0,57,0:0:0:57,0:2032,0:-183.153,-17.1587,0,-183.153,-17.1587,-183.153	1/1:51:0,51,0:0:0:51,0:1816,0:-163.721,-15.3525,0,-163.721,-15.3525,-163.721	1/1:56:0,56,0:0:0:56,0:2004,0:-180.634,-16.8577,0,-180.634,-16.8577,-180.634	1/2:42:0,17,24:0:0:17,24:604,815:-115.38,-66.1545,-61.037,-49.2889,0,-42.0642	1/2:66:0,36,30:0:0:36,30:1280,1068:-191.712,-87.4013,-76.5643,-104.666,0,-95.6353	1/1:52:0,52,0:0:0:52,0:1833,0:-165.249,-15.6536,0,-165.249,-15.6536,-165.249	1/2:39:0,18,21:0:0:18,21:644,750:-114.019,-61.5045,-56.0859,-52.8721,0,-46.5504	1/2:202:0,98,100:0:0:98,100:3508,3521:-572.725,-286.651,-257.15,-286.079,0,-255.976	1/2:98:0,43,55:0:0:43,55:1524,1931:-281.666,-157.51,-144.565,-124.509,0,-107.952	1/2:171:0,54,117:0:0:54,117:1919,4119:-492.056,-335.679,-319.424,-156.731,0,-121.51	1/1:32:0,32,0:0:0:32,0:1136,0:-102.549,-9.63296,0,-102.549,-9.63296,-102.549	1/1:83:0,78,5:0:0:78,5:2772,178:-249.364,-23.4803,0,-234.856,-8.61684,-233.351	1/2:57:0,22,35:0:0:22,35:776,1232:-163.834,-100.647,-94.0242,-63.5395,0,-53.0034	1/1:346:0,346,0:0:0:346,0:12332,0:-1109.72,-104.156,0,-1109.72,-104.156,-1109.72	1/2:153:0,76,76:0:0:76,76:2697,2637:-434.211,-214.466,-191.587,-219.864,0,-196.986	1/1:44:0,44,0:0:0:44,0:1563,0:-140.961,-13.2453,0,-140.961,-13.2453,-140.961	1/1:215:0,214,1:0:0:214,1:7656,36:-688.717,-64.4204,0,-685.779,-61.1232,-685.478	1/2:181:0,87,94:0:0:87,94:3093,3330:-523.677,-271.624,-245.434,-252.408,0,-224.111	1/2:98:0,54,44:0:0:54,44:1920,1533:-281.485,-125.015,-108.76,-156.822,0,-143.576	1/2:5:0,2,3:0:0:2,3:63,103:-13.7617,-8.70681,-8.10475,-5.38109,0,-4.478	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:3:0,2,1:0:0:2,1:68,36:-8.79971,-3.29724,-2.69518,-5.85565,0,-5.55462	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:195:0,92,103:0:0:92,103:3276,3651:-564.803,-297.793,-270.098,-267.365,0,-236.359	1/2:325:0,156,169:0:0:156,169:5561,5910:-934.453,-481.15,-434.189,-453.656,0,-402.782	1/1:63:0,63,0:0:0:63,0:2206,0:-198.804,-18.9649,0,-198.804,-18.9649,-198.804	.:.:.:.:.:.:.:.	1/1:172:0,172,0:0:0:172,0:6156,0:-554.139,-51.7772,0,-554.139,-51.7772,-554.139	1/2:24:0,7,17:0:0:7,17:252,576:-67.6078,-47.0397,-44.9325,-20.9217,0,-15.8042	1/2:210:0,107,103:0:0:107,103:3827,3605:-605.694,-293.631,-261.421,-312.417,0,-281.411	1/2:62:0,36,25:0:0:36,25:1280,887:-176.575,-72.2638,-61.4267,-104.306,0,-96.7807	1/2:52:0,29,23:0:0:29,23:1040,819:-151.936,-67.109,-58.3791,-85.1845,0,-78.2608	1/1:55:0,55,0:0:0:55,0:1959,0:-176.585,-16.5567,0,-176.585,-16.5567,-176.585	1/1:131:0,131,0:0:0:131,0:4637,0:-417.495,-39.4349,0,-417.495,-39.4349,-417.495	1/2:177:0,87,90:0:0:87,90:3108,3180:-512.467,-259.335,-233.146,-253.486,0,-226.394	1/2:132:0,62,69:0:0:62,69:2216,2422:-377.792,-197.105,-178.442,-180.681,0,-159.91	1/2:150:0,76,74:0:0:76,74:2708,2598:-432.528,-211.795,-188.917,-221.086,0,-198.81	1/2:117:0,62,55:0:0:62,55:2228,1888:-335.409,-153.64,-134.976,-182.12,0,-165.563	1/2:5:0,2,3:0:0:2,3:72,106:-14.8635,-8.98601,-8.38395,-6.23466,0,-5.33157	1/1:152:0,150,0:0:0:150,0:5348,0:-481.177,-45.1545,0,-481.177,-45.1545,-481.177	1/2:70:0,32,38:0:0:32,38:1144,1312:-200.223,-106.938,-97.3048,-93.6366,0,-82.1974	1/2:17:0,10,7:0:0:10,7:345,252:-48.9386,-20.9217,-17.9114,-28.3705,0,-26.2633	1/1:91:0,91,0:0:0:91,0:3234,0:-291.273,-27.3937,0,-291.273,-27.3937,-291.273	1/1:22:0,22,0:0:0:22,0:784,0:-70.8839,-6.62266,0,-70.8839,-6.62266,-70.88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chr04	31486995	.	C	T	31712.6	PASS	AB=0.493108;ABP=4.59669;AC=45;AF=0.241935;AN=186;AO=1904;CIGAR=1X;DP=8275;DPB=8275;DPRA=0.994221;EPP=4137.49;EPPR=13828.8;GTI=2;LEN=1;MEANALT=1.02;MQM=59.9921;MQMR=59.9953;NS=93;NUMALT=1;ODDS=0.277666;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68023;QR=227996;RO=6367;RPL=0;RPP=4137.49;RPPR=13828.8;RPR=1904;RUN=1;SAF=1904;SAP=4137.49;SAR=0;SRF=6367;SRP=13828.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:6,13:6:216:13:460:-36.0158,0,-14.0709	0/0:160:160,0:160:5716:0:0:0,-48.1648,-514.559	0/0:135:135,0:135:4832:0:0:0,-40.639,-435.035	0/0:217:217,0:217:7772:0:0:0,-65.3235,-699.51	0/1:29:12,17:12:428:17:604:-45.9589,0,-30.1289	0/1:80:51,29:51:1820:29:1029:-68.8387,0,-139.999	0/1:105:52,53:52:1856:53:1900:-139.667,0,-135.712	0/0:137:137,0:137:4888:0:0:0,-41.2411,-440.071	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:150:150,0:150:5388:0:0:0,-45.1545,-485.049	0/1:38:13,25:13:468:25:900:-69.8819,0,-31.0205	0/1:71:37,34:37:1324:34:1220:-88.7337,0,-98.089	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/0:78:78,0:78:2782:0:0:0,-23.4803,-250.62	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.099	0/1:49:24,25:24:860:25:887:-65.3976,0,-62.9714	0/1:97:47,50:47:1675:50:1800:-133.082,0,-121.837	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:35:14,21:14:500:21:756:-57.8312,0,-34.8001	0/1:107:59,48:59:2108:48:1716:-122.515,0,-157.779	0/1:165:85,80:85:3040:80:2864:-208.327,0,-224.16	0/1:65:22,43:22:788:43:1528:-118.246,0,-51.6778	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:40:33,7:33:1180:7:252:-10.9878,0,-94.4668	0/1:48:20,28:20:716:28:1004:-76.2264,0,-50.3183	0/0:321:321,0:321:11473:0:0:0,-96.6306,-1032.44	0/1:206:91,115:91:3252:115:4090:-306.272,0,-230.889	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:142:142,0:142:5084:0:0:0,-42.7463,-457.704	0/1:130:69,61:69:2468:61:2192:-158.412,0,-183.24	0/1:116:52,64:52:1872:64:2277:-170.271,0,-133.84	.:.:.:.:.:.:.:.	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:243:122,121:122:4384:121:4344:-317.983,0,-321.581	0/1:164:108,56:108:3872:56:2004:-131.265,0,-299.305	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:169:167,2:167:5961:2:72:0,-44.0373,-529.761	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/1:100:48,52:48:1724:52:1864:-137.936,0,-125.342	0/1:65:35,30:35:1260:30:1072:-77.2255,0,-94.1385	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:132:132,0:132:4724:0:0:0,-39.736,-424.693	0/1:180:96,84:96:3440:84:2984:-214.609,0,-255.627	0/1:116:57,59:57:2044:59:2090:-153.449,0,-149.312	0/1:123:59,64:59:2116:64:2292:-169.515,0,-153.682	0/1:67:25,42:25:892:42:1496:-114.766,0,-60.4307	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:100:98,2:98:3520:2:72:0,-23.2663,-310.172	0/1:28:9,19:9:324:19:680:-53.1003,0,-21.077	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:78:77,0:77:2752:0:0:0,-23.1793,-247.71	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:42:29,13:29:1040:13:453:-28.4564,0,-81.2711	0/0:120:118,1:118:4232:1:36:0,-32.5841,-377.461	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:201:201,0:201:7184:0:0:0,-60.507,-646.617	0/1:190:92,98:92:3296:98:3516:-259.454,0,-239.663	0/0:39:38,1:38:1364:1:36:0,-8.14189,-119.462	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:152:151,0:151:5400:0:0:0,-45.4555,-485.772	0/0:86:86,0:86:3083:0:0:0,-25.8886,-277.697	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/1:104:51,53:51:1836:53:1904:-140.331,0,-134.214	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:86:46,40:46:1640:40:1421:-102.297,0,-122	0/0:81:80,0:80:2856:0:0:0,-24.0824,-256.918	0/0:191:191,0:191:6848:0:0:0,-57.4967,-616.388	0/1:130:72,58:72:2588:58:2051:-145.724,0,-194.035	0/1:54:34,20:34:1212:20:716:-48.5121,0,-93.1307	0/0:164:162,2:162:5804:2:72:0,-42.5322,-515.636	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:91:53,38:53:1904:38:1356:-94.9468,0,-144.244	0/1:121:71,50:71:2540:50:1780:-124.058,0,-192.426	0/0:167:167,0:167:5988:0:0:0,-50.272,-539.025	0/0:131:131,0:131:4695:0:0:0,-39.4349,-422.709	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:105:53,52:53:1904:52:1856:-135.712,0,-140.03	0/1:189:95,94:95:3390:94:3357:-245.451,0,-248.42	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.932	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:63:29,34:29:1044:34:1220:-91.1419,0,-75.3099	0/1:90:32,58:32:1148:58:2072:-159.658,0,-76.5371	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/0:120:120,0:120:4299:0:0:0,-36.1236,-387.086
chr04	31487018	.	C	T	42549.9	PASS	AB=0.491118;ABP=5.63331;AC=46;AF=0.247312;AN=186;AO=1889;CIGAR=1X;DP=8211;DPB=8211;DPRA=1.05951;EPP=88.684;EPPR=3.0103;GTI=2;LEN=1;MEANALT=1.01961;MQM=59.991;MQMR=59.9949;NS=93;NUMALT=1;ODDS=0.463795;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67480;QR=225224;RO=6320;RPL=806;RPP=91.213;RPPR=3.03229;RPR=1083;RUN=1;SAF=1887;SAP=4087.57;SAR=2;SRF=6316;SRP=13692;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:5,12:5:176:12:424:-33.3789,0,-11.0675	0/0:158:158,0:158:5634:0:0:0,-47.5627,-507.182	0/0:136:136,0:136:4867:0:0:0,-40.9401,-438.183	0/0:216:216,0:216:7747:0:0:0,-65.0225,-697.259	0/1:32:14,18:14:504:18:626:-47.0298,0,-36.0651	0/1:78:50,28:50:1788:28:1008:-67.556,0,-137.722	0/1:106:52,54:52:1852:54:1925:-141.613,0,-135.051	0/0:134:134,0:134:4782:0:0:0,-40.338,-430.537	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.451	0/1:39:13,26:13:468:26:936:-72.8193,0,-30.7195	0/1:70:37,33:37:1323:33:1188:-86.1565,0,-98.2992	0/0:98:98,0:98:3429:0:0:0,-29.5009,-308.823	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.743	0/1:48:23,25:23:804:25:896:-66.5109,0,-58.2271	0/1:94:46,48:46:1625:48:1704:-125.349,0,-118.24	0/0:71:71,0:71:2498:0:0:0,-21.3731,-225.068	0/1:35:14,21:14:504:21:752:-57.4702,0,-35.162	0/1:107:61,46:61:2180:46:1644:-116.038,0,-164.256	0/1:167:86,81:86:3083:81:2877:-208.894,0,-227.425	0/1:66:22,43:22:780:43:1544:-119.326,0,-50.5965	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:39:32,7:32:1144:7:252:-11.2888,0,-91.5293	0/1:49:21,28:21:744:28:1008:-76.2859,0,-52.5339	0/0:317:315,2:315:11210:2:72:0,-88.5898,-1001.96	0/1:205:90,115:90:3210:115:4109:-308.282,0,-227.411	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:140:140,0:140:4982:0:0:0,-42.1442,-448.53	0/1:129:71,58:71:2531:58:2084:-148.997,0,-189.208	0/1:114:50,64:50:1792:64:2296:-172.584,0,-127.245	.:.:.:.:.:.:.:.	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:243:120,123:120:4275:123:4394:-322.482,0,-311.779	0/1:162:106,56:106:3772:56:2008:-132.226,0,-290.915	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:167:165,2:165:5845:2:68:0,-43.8143,-519.707	0/1:31:17,14:17:604:14:504:-36.3662,0,-45.3587	0/1:30:14,16:14:495:16:568:-42.4206,0,-35.8521	0/1:100:47,53:47:1675:53:1887:-140.005,0,-120.933	0/1:63:33,30:33:1184:30:1080:-78.5484,0,-87.9034	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/0:129:129,0:129:4606:0:0:0,-38.8329,-414.077	0/1:172:89,83:89:3171:83:2964:-215.217,0,-233.838	0/1:120:60,60:60:2144:60:2131:-155.934,0,-157.104	0/1:120:58,62:58:2058:62:2220:-163.941,0,-149.367	0/1:63:25,38:25:892:38:1334:-101.394,0,-61.6348	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:100:98,2:98:3512:2:72:0,-23.2663,-309.453	0/1:28:10,18:10:360:18:648:-50.223,0,-24.3155	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/0:75:75,0:75:2649:0:0:0,-22.5772,-238.656	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:43:28,15:28:1004:15:540:-35.9922,0,-77.7316	0/0:121:121,0:121:4316:0:0:0,-36.4246,-388.618	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:198:198,0:198:7046:0:0:0,-59.6039,-634.206	0/1:190:92,98:92:3292:98:3477:-255.944,0,-239.304	0/0:40:39,1:39:1391:1:36:0,-8.44292,-121.89	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/0:148:147,0:147:5232:0:0:0,-44.2514,-470.659	0/0:88:88,0:88:3112:0:0:0,-26.4906,-280.307	0/0:22:22,0:22:769:0:0:0,-6.62266,-69.5286	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/1:105:51,54:51:1828:54:1940:-143.268,0,-133.193	0/1:12:3,9:3:104:9:316:-25.1665,0,-6.09045	0/1:85:46,39:46:1648:39:1396:-100.352,0,-123.021	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:187:187,0:187:6667:0:0:0,-56.2926,-600.11	0/1:128:72,56:72:2536:56:2008:-142.461,0,-189.959	0/1:53:34,19:34:1216:19:680:-45.5746,0,-93.792	0/0:168:166,2:166:5927:2:72:0,-43.7363,-526.703	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:93:54,39:54:1924:39:1404:-98.6635,0,-145.441	0/1:124:75,49:75:2684:49:1748:-120.277,0,-204.477	0/0:166:166,0:166:5925:0:0:0,-49.971,-533.359	0/0:129:129,0:129:4611:0:0:0,-38.8329,-415.154	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.607	0/1:104:53,51:53:1904:51:1813:-132.142,0,-140.331	0/1:181:89,92:89:3163:92:3283:-241.203,0,-230.409	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/0:88:88,0:88:3102:0:0:0,-26.4906,-279.407	0/0:99:99,0:99:3526:0:0:0,-29.802,-317.55	0/0:31:31,0:31:1092:0:0:0,-9.33193,-98.5868	0/1:63:29,34:29:1040:34:1212:-90.4214,0,-74.9495	0/1:87:32,55:32:1135:55:1976:-151.925,0,-76.2685	0/0:67:67,0:67:2382:0:0:0,-20.169,-214.637	0/0:122:122,0:122:4330:0:0:0,-36.7257,-389.876
chr04	31512414	.	AAG	GAG,GAA	238512	PASS	AB=0.482471,0.515255;ABP=17.0938,13.6767;AC=142,46;AF=0.755319,0.244681;AN=188;AO=8307,2733;CIGAR=1X2M,1X1M1X;DP=11075;DPB=11079;DPRA=0,1.09085;EPP=18041.4,5937.64;EPPR=13.8677;GTI=0;LEN=1,3;MEANALT=1.87234,2.22222;MQM=59.8877,59.8789;MQMR=60;NS=94;NUMALT=2;ODDS=3.52096;PAIRED=0,0;PAIREDR=0;PAO=3.5,3.5;PQA=124,124;PQR=0;PRO=5;QA=297769,96870;QR=172;RO=5;RPL=8307,2733;RPP=18041.4,5937.64;RPPR=13.8677;RPR=0,0;RUN=1,1;SAF=0,0;SAP=18041.4,5937.64;SAR=8307,2733;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,22,24:0:0:22,24:788,852:-134.041,-69.7753,-63.1526,-64.6221,0,-57.3974	1/1:164:0,163,0:0:0:163,0:5860,0:-527.12,-49.0679,0,-527.12,-49.0679,-527.12	1/1:186:0,186,0:0:0:186,0:6678,0:-600.821,-55.9916,0,-600.821,-55.9916,-600.821	1/1:282:0,282,0:0:0:282,0:10126,0:-910.993,-84.8905,0,-910.993,-84.8905,-910.993	1/2:67:0,44,23:0:0:44,23:1576,810:-194.747,-66.2143,-52.969,-128.886,0,-121.963	1/2:94:0,38,56:0:0:38,56:1368,2012:-276.118,-164.496,-153.056,-111.982,0,-95.124	1/2:238:0,111,126:0:0:111,126:3996,4507:-693.532,-367.508,-334.094,-326.023,0,-288.093	1/1:164:0,164,0:0:0:164,0:5884,0:-529.465,-49.3689,0,-529.465,-49.3689,-529.465	1/1:105:0,105,0:0:0:105,0:3748,0:-337.521,-31.6082,0,-337.521,-31.6082,-337.521	1/1:127:0,127,0:0:0:127,0:4556,0:-410.204,-38.2308,0,-410.204,-38.2308,-410.204	1/2:76:0,32,44:0:0:32,44:1152,1520:-217.832,-123.828,-114.195,-94.3572,0,-81.1119	1/2:119:0,71,48:0:0:71,48:2556,1716:-348.771,-140.209,-118.836,-208.852,0,-194.403	1/1:103:0,103,0:0:0:103,0:3708,0:-333.852,-31.0061,0,-333.852,-31.0061,-333.852	1/1:104:0,104,0:0:0:104,0:3740,0:-336.799,-31.3071,0,-336.799,-31.3071,-336.799	1/1:101:0,100,0:0:0:100,0:3592,0:-323.126,-30.103,0,-323.126,-30.103,-323.126	1/2:61:0,20,41:0:0:20,41:720,1445:-176.752,-118.001,-111.98,-59.1082,0,-46.7659	1/2:131:0,75,56:0:0:75,56:2683,1977:-380.128,-161.346,-138.768,-219.137,0,-202.279	1/1:85:0,85,0:0:0:85,0:3044,0:-274.19,-25.5876,0,-274.19,-25.5876,-274.19	1/2:50:0,29,21:0:0:29,21:1040,756:-146.871,-62.0456,-53.3157,-85.1845,0,-78.8629	1/2:216:0,100,116:0:0:100,116:3592,4106:-627.728,-334.746,-304.643,-293.274,0,-258.354	1/2:170:0,80,89:0:0:80,89:2841,3133:-486.473,-254.985,-230.903,-231.481,0,-204.689	1/2:127:0,44,83:0:0:44,83:1572,2908:-365.126,-236.955,-223.71,-128.525,0,-103.54	1/1:142:0,138,0:0:0:138,0:4946,0:-444.872,-41.5421,0,-444.872,-41.5421,-444.872	1/1:175:0,169,5:0:0:169,5:6027,180:-541.889,-50.8741,0,-527.202,-36.187,-525.697	1/2:124:0,62,62:0:0:62,62:2224,2214:-362.257,-180.856,-162.192,-181.758,0,-163.095	1/1:324:0,322,1:0:0:322,1:11526,36:-1036.86,-96.9317,0,-1033.92,-93.9443,-1033.62	1/2:341:0,178,160:0:0:178,160:6388,5637:-979.994,-458.926,-405.343,-521.064,0,-472.899	1/1:41:0,41,0:0:0:41,0:1472,0:-132.719,-12.3422,0,-132.719,-12.3422,-132.719	1/1:368:0,366,0:0:0:366,0:13107,0:-1178.88,-110.177,0,-1178.88,-110.177,-1178.88	1/2:144:0,46,97:0:0:46,97:1652,3427:-413.845,-279.081,-265.234,-134.762,0,-105.562	1/2:120:0,41,79:0:0:41,79:1460,2789:-346.453,-227.468,-215.126,-119.34,0,-95.5587	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:29:0,10,19:0:0:10,19:360,668:-84.102,-54.725,-51.7147,-29.734,0,-24.0144	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:11:0,8,3:0:0:8,3:288,106:-32.4902,-8.98601,-6.57777,-23.8592,0,-22.9561	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:257:1,133,123:1:36:133,123:4763,4352:-739.61,-351.525,-314.426,-385.445,0,-351.355	1/2:142:0,92,50:0:0:92,50:3300,1792:-415.673,-146.507,-118.812,-269.524,0,-254.472	1/1:98:0,97,0:0:0:97,0:3484,0:-313.364,-29.1999,0,-313.364,-29.1999,-313.364	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:154:0,152,2:0:0:152,2:5418,72:-487.389,-45.7566,0,-481.514,-39.5219,-480.912	1/2:46:0,25,21:0:0:25,21:896,754:-134.941,-61.8652,-54.3395,-73.4346,0,-67.113	1/2:157:1,59,97:1:28:59,97:2112,3440:-449.966,-278.035,-262.493,-170.09,0,-143.107	1/2:117:0,58,59:0:0:58,59:2088,2105:-342.329,-171.959,-154.499,-170.728,0,-152.968	1/2:65:0,29,35:0:0:29,35:1029,1237:-184.575,-100.738,-92.0077,-83.8316,0,-73.2956	1/1:155:0,152,2:0:0:152,2:5464,70:-491.568,-45.7566,0,-485.872,-39.9946,-485.27	1/1:168:0,167,0:0:0:167,0:5992,0:-539.023,-50.272,0,-539.023,-50.272,-539.023	1/2:138:0,69,69:0:0:69,69:2480,2431:-400.491,-198.251,-177.479,-202.596,0,-181.825	1/2:147:0,75,72:0:0:75,72:2688,2563:-428.454,-209.238,-186.661,-219.574,0,-197.899	1/2:106:0,40,66:0:0:40,66:1436,2355:-309.297,-192.183,-180.142,-117.472,0,-97.6038	1/2:220:0,114,105:0:0:114,105:4096,3741:-638.962,-304.923,-270.605,-334.038,0,-302.429	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:169:0,169,0:0:0:169,0:6031,0:-542.894,-50.8741,0,-542.894,-50.8741,-542.894	1/2:69:0,28,41:0:0:28,41:1008,1451:-200.79,-118.54,-110.111,-82.6075,0,-70.2653	1/2:9:0,5,4:0:0:5,4:180,142:-26.6149,-11.9251,-10.4199,-15.0469,0,-13.8428	1/1:119:0,119,0:0:0:119,0:4248,0:-38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chr04	31528435	.	G	A	138203	PASS	AB=0.482295;ABP=14.1593;AC=142;AF=0.755319;AN=188;AO=6542;CIGAR=1X;DP=8677;DPB=8677;DPRA=0;EPP=14208.8;EPPR=4636.93;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9479;MQMR=59.992;NS=94;NUMALT=1;ODDS=0.78454;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233825;QR=76156;RO=2134;RPL=0;RPP=14208.8;RPPR=4636.93;RPR=6542;RUN=1;SAF=6542;SAP=14208.8;SAR=0;SRF=2134;SRP=4636.93;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:17,18:17:608:18:644:-47.7545,0,-44.516	1/1:88:0,88:0:0:88:3149:-283.633,-26.4906,0	1/1:142:0,142:0:0:142:5066:-456.074,-42.7463,0	1/1:148:0,148:0:0:148:5287:-475.965,-44.5524,0	0/1:84:56,28:56:1989:28:1008:-65.7498,0,-153.996	0/1:48:29,19:29:1029:19:684:-47.4409,0,-78.4717	0/1:147:64,83:64:2285:83:2940:-220.581,0,-161.659	1/1:155:0,155:0:0:155:5549:-499.524,-46.6597,0	1/1:128:0,128:0:0:128:4573:-411.683,-38.5318,0	1/1:141:0,141:0:0:141:5015:-451.493,-42.4452,0	0/1:48:27,21:27:972:21:752:-53.5568,0,-73.3485	0/1:79:39,40:39:1396:40:1428:-105.036,0,-102.158	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	1/1:45:0,45:0:0:45:1605:-144.738,-13.5464,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:64:31,33:31:1089:33:1188:-87.9627,0,-79.0514	0/1:86:56,30:56:2012:30:1072:-70.9039,0,-155.465	1/1:53:0,53:0:0:53:1908:-171.808,-15.9546,0	0/1:53:31,22:31:1116:22:784:-54.9293,0,-84.7971	0/1:123:80,43:80:2838:43:1544:-102.225,0,-218.629	0/1:126:65,61:65:2321:61:2139:-154.843,0,-171.219	0/1:125:75,50:75:2681:50:1796:-124.294,0,-203.905	1/1:79:0,79:0:0:79:2832:-255.11,-23.7814,0	1/1:96:7,89:7:237:89:3151:-261.783,-7.23982,0	0/1:57:23,34:23:813:34:1220:-92.9435,0,-56.3304	1/1:365:0,365:0:0:365:13054:-1174.64,-109.876,0	0/1:228:108,120:108:3857:120:4293:-317.911,0,-278.69	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:292:0,292:0:0:292:10406:-936.446,-87.9008,0	0/1:106:59,47:59:2101:47:1684:-119.938,0,-157.449	0/1:94:34,60:34:1224:60:2141:-164.659,0,-82.1702	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:218:119,99:119:4280:99:3556:-254.623,0,-319.751	0/1:180:73,107:73:2590:107:3831:-290.801,0,-179.161	1/1:79:0,79:0:0:79:2836:-255.47,-23.7814,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:152:0,152:0:0:152:5416:-487.569,-45.7566,0	0/1:36:23,13:23:828:13:468:-31.6226,0,-64.007	0/1:149:71,78:71:2548:78:2765:-204.231,0,-184.717	0/1:78:43,35:43:1540:35:1245:-88.87,0,-115.413	0/1:84:45,39:45:1616:39:1392:-100.292,0,-120.443	1/1:205:0,205:0:0:205:7284:-655.607,-61.7112,0	1/1:115:0,115:0:0:115:4111:-370.128,-34.6185,0	0/1:180:79,101:79:2836:101:3609:-270.824,0,-201.263	0/1:92:42,50:42:1489:50:1800:-134.587,0,-106.608	0/1:96:46,50:46:1633:50:1783:-131.854,0,-118.358	0/1:74:37,37:37:1317:37:1320:-96.8257,0,-96.5536	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:105:0,105:0:0:105:3737:-336.517,-31.6082,0	0/1:36:19,17:19:665:17:612:-44.5764,0,-49.3357	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:81:0,81:0:0:81:2916:-262.674,-24.3834,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:14:3,11:3:108:11:392:-31.4047,0,-5.86075	0/1:72:38,34:38:1368:34:1216:-88.0724,0,-101.747	1/1:123:0,123:0:0:123:4374:-393.833,-37.0267,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:236:1,235:1:36:235:8369:-749.616,-67.4448,0	0/1:159:86,73:86:3080:73:2615:-187.677,0,-229.564	1/1:69:2,67:2:72:67:2393:-208.789,-13.9343,0	1/1:68:0,68:0:0:68:2429:-218.864,-20.47,0	1/1:97:2,95:2:72:95:3392:-298.657,-22.3632,0	1/1:87:0,87:0:0:87:3081:-277.488,-26.1896,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:74:0,74:0:0:74:2645:-238.295,-22.2762,0	0/1:64:38,26:38:1360:26:921:-63.9384,0,-103.435	0/1:9:7,2:7:248:2:68:-3.74844,0,-19.9549	0/1:149:83,66:83:2934:66:2356:-167.445,0,-219.44	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	1/1:144:0,144:0:0:144:5130:-461.839,-43.3483,0	0/1:159:73,86:73:2597:86:3050:-226.863,0,-186.114	0/1:126:75,51:75:2685:51:1836:-127.591,0,-203.963	1/1:62:3,59:3:108:59:2120:-180.993,-8.58869,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:99:57,42:57:2040:42:1512:-106.573,0,-154.07	0/1:114:64,50:64:2300:50:1781:-126.255,0,-172.943	1/1:198:0,198:0:0:198:7116:-640.495,-59.6039,0	1/1:118:0,118:0:0:118:4236:-381.416,-35.5215,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:76:32,43:32:1137:43:1540:-115.995,0,-79.7387	0/1:159:79,80:79:2806:80:2876:-211.208,0,-204.913	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:33:0,33:0:0:33:1188:-106.45,-9.93399,0	0/1:73:35,38:35:1241:38:1364:-101.086,0,-90.0173	0/1:54:37,17:37:1298:17:612:-39.1578,0,-100.862	1/1:106:0,106:0:0:106:3796:-341.564,-31.9092,0	1/1:104:0,104:0:0:104:3728:-335.721,-31.3071,0
chr04	31528445	.	A	G	35562	PASS	AB=0.516884;ABP=13.0562;AC=46;AF=0.244681;AN=188;AO=2113;CIGAR=1X;DP=8593;DPB=8593;DPRA=1.0289;EPP=4591.33;EPPR=14072;GTI=0;LEN=1;MEANALT=1.01923;MQM=59.9938;MQMR=59.9489;NS=94;NUMALT=1;ODDS=0.743685;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75323;QR=230454;RO=6479;RPL=0;RPP=4591.33;RPPR=14072;RPR=2113;RUN=1;SAF=2113;SAP=4591.33;SAR=0;SRF=6479;SRP=14072;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:18,17:18:633:17:597:-43.5201,0,-46.759	0/0:86:86,0:86:3050:0:0:0,-25.8886,-274.728	0/0:139:139,0:139:4932:0:0:0,-41.8432,-444.019	0/0:149:149,0:149:5306:0:0:0,-44.8535,-477.67	0/1:83:28,55:28:1008:55:1953:-151.058,0,-66.0509	0/1:46:18,28:18:644:28:1008:-77.189,0,-44.4432	0/1:147:83,64:83:2953:64:2262:-159.588,0,-221.752	0/0:153:153,0:153:5432:0:0:0,-46.0576,-489.007	0/0:126:126,0:126:4498:0:0:0,-37.9298,-404.934	0/0:139:139,0:139:4958:0:0:0,-41.8432,-446.366	0/1:47:21,26:21:756:26:932:-70.0505,0,-54.2188	0/1:78:39,39:39:1404:39:1400:-102.819,0,-103.179	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.102	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/1:64:34,30:34:1224:30:1080:-78.2473,0,-91.2011	0/1:84:29,55:29:1029:55:1965:-151.837,0,-67.6346	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.523	0/1:53:23,30:23:828:30:1080:-81.5587,0,-58.8895	0/1:121:42,79:42:1493:79:2807:-216.445,0,-98.237	0/1:123:60,63:60:2144:63:2249:-165.646,0,-156.201	0/1:124:50,74:50:1758:74:2652:-201.598,0,-121.172	0/0:78:78,0:78:2751:0:0:0,-23.4803,-247.828	0/0:96:89,7:89:3158:7:252:0,-5.86992,-261.044	0/1:57:33,24:33:1173:24:849:-59.5691,0,-88.7122	0/0:364:364,0:364:12894:0:0:0,-109.575,-1160.22	0/1:225:119,106:119:4276:106:3785:-273.116,0,-317.285	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:290:290,0:290:10306:0:0:0,-87.2987,-927.408	0/1:106:47,59:47:1654:59:2087:-156.189,0,-117.234	0/1:93:59,34:59:2097:34:1190:-79.4052,0,-161.002	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:1,6:1:36:6:207:-16.8597,0,-1.49106	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:217:99,118:99:3537:118:4220:-314.657,0,-253.214	0/1:181:106,75:106:3759:75:2673:-186.328,0,-284.021	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.512	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:151:151,0:151:5378:0:0:0,-45.4555,-484.15	0/1:35:14,21:14:504:21:756:-57.8312,0,-35.162	0/1:147:75,71:75:2677:71:2536:-184.23,0,-196.908	0/1:77:35,42:35:1226:42:1512:-113.195,0,-87.4581	0/1:83:38,45:38:1364:45:1601:-119.393,0,-98.0752	0/0:202:201,1:201:7012:1:36:0,-57.2098,-627.543	0/0:112:112,0:112:3998:0:0:0,-33.7154,-359.962	0/1:177:98,79:98:3486:79:2798:-198.765,0,-260.662	0/1:91:51,40:51:1805:40:1417:-100.432,0,-135.336	0/1:95:49,46:49:1730:46:1652:-120.371,0,-127.383	0/1:76:38,38:38:1360:38:1353:-99.1901,0,-99.8223	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:104:104,0:104:3691:0:0:0,-31.3071,-332.376	0/1:35:17,18:17:597:18:644:-47.7545,0,-43.5201	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.766	0/1:73:33,40:33:1184:40:1436:-107.562,0,-84.8931	0/0:122:122,0:122:4369:0:0:0,-36.7257,-393.382	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:233:232,1:232:8249:1:36:0,-66.5417,-738.821	0/1:155:72,83:72:2535:83:2976:-221.413,0,-181.667	0/0:69:67,2:67:2358:2:72:0,-13.9343,-205.64	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:95:93,2:93:3325:2:72:0,-21.7611,-292.63	0/0:87:87,0:87:3098:0:0:0,-26.1896,-279.016	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:63:26,37:26:928:37:1324:-100.497,0,-64.8725	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:151:67,84:67:2374:84:2981:-223.067,0,-168.459	0/0:82:82,0:82:2906:0:0:0,-24.6845,-261.774	0/0:139:139,0:139:4919:0:0:0,-41.8432,-442.86	0/1:156:85,71:85:3037:71:2552:-182.969,0,-226.597	0/1:126:51,75:51:1779:75:2654:-201.174,0,-122.457	0/0:62:59,3:59:2086:3:104:0,-8.96105,-178.304	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:98:42,56:42:1512:56:1967:-147.799,0,-106.874	0/1:115:50,65:50:1724:65:2316:-174.082,0,-120.818	0/0:198:198,0:198:7071:0:0:0,-59.6039,-636.446	0/0:116:116,0:116:4153:0:0:0,-34.9195,-373.949	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:75:42,33:42:1508:33:1172:-83.2102,0,-113.437	0/1:155:80,75:80:2853:75:2696:-196.224,0,-210.343	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:86:86,0:86:3047:0:0:0,-25.8886,-274.456	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.747	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.615	0/1:72:37,35:37:1320:35:1233:-89.5979,0,-97.4278	0/1:53:17,36:17:612:36:1283:-99.8189,0,-39.4588	0/0:103:103,0:103:3605:0:0:0,-31.0061,-324.642	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244
chr04	31528447	.	A	G	135490	PASS	AB=0.480655;ABP=16.1167;AC=142;AF=0.755319;AN=188;AO=6426;CIGAR=1X;DP=8537;DPB=8537;DPRA=0;EPP=13956.9;EPPR=4571.79;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9556;MQMR=59.9981;NS=94;NUMALT=1;ODDS=0.914852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229455;QR=75049;RO=2104;RPL=0;RPP=13956.9;RPPR=4571.79;RPR=6426;RUN=1;SAF=6426;SAP=13956.9;SAR=0;SRF=2104;SRP=4571.79;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:16,17:16:568:17:612:-45.4794,0,-41.5179	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	1/1:138:0,138:0:0:138:4941:-444.837,-41.5421,0	1/1:145:0,145:0:0:145:5177:-466.07,-43.6494,0	0/1:82:55,27:55:1953:27:962:-62.2118,0,-151.359	0/1:47:28,18:28:1008:18:648:-44.4447,0,-76.8291	0/1:144:63,81:63:2260:81:2901:-217.975,0,-160.314	1/1:150:0,150:0:0:150:5357:-482.261,-45.1545,0	1/1:124:0,124:0:0:124:4436:-399.36,-37.3277,0	1/1:141:0,141:0:0:141:5029:-452.756,-42.4452,0	0/1:46:27,19:27:968:19:680:-47.6818,0,-73.59	0/1:79:39,40:39:1396:40:1432:-105.396,0,-102.158	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	1/1:44:0,44:0:0:44:1570:-141.591,-13.2453,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:64:31,33:31:1116:33:1180:-87.2421,0,-81.4858	0/1:81:51,30:51:1836:30:1076:-72.7694,0,-141.137	1/1:56:0,56:0:0:56:2000:-180.084,-16.8577,0	0/1:53:31,22:31:1116:22:788:-55.2902,0,-84.7971	0/1:120:79,41:79:2832:41:1457:-95.3004,0,-218.995	0/1:121:64,57:64:2288:57:2036:-147.088,0,-169.757	0/1:126:76,50:76:2705:50:1788:-123.273,0,-205.763	1/1:78:0,78:0:0:78:2787:-251.062,-23.4803,0	1/1:95:7,88:7:237:88:3149:-261.604,-6.93879,0	0/1:57:24,33:24:864:33:1171:-88.5369,0,-60.9239	1/1:361:0,361:0:0:361:12891:-1160.01,-108.672,0	0/1:226:107,119:107:3795:119:4240:-313.746,0,-273.713	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	1/1:286:0,286:0:0:286:10181:-916.165,-86.0946,0	0/1:106:58,48:58:2061:48:1716:-122.816,0,-153.85	0/1:93:33,60:33:1188:60:2115:-162.62,0,-79.2328	0/1:11:6,5:6:197:5:176:-12.8737,0,-14.74	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:210:116,94:116:4153:94:3363:-239.67,0,-310.735	0/1:181:74,106:74:2598:106:3790:-286.752,0,-179.522	1/1:75:0,75:0:0:75:2683:-241.706,-22.5773,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:151:0,151:0:0:151:5374:-483.792,-45.4555,0	0/1:36:23,13:23:828:13:464:-31.2604,0,-64.007	0/1:145:71,74:71:2514:74:2639:-194.103,0,-182.86	0/1:74:41,33:41:1468:33:1184:-84.5912,0,-110.14	0/1:84:46,38:46:1656:38:1368:-98.1343,0,-124.042	1/1:200:0,200:0:0:200:7152:-643.733,-60.206,0	1/1:112:0,112:0:0:112:4001:-360.276,-33.7154,0	0/1:175:78,96:78:2784:96:3444:-257.431,0,-198.06	0/1:89:40,49:40:1436:49:1760:-131.892,0,-102.746	0/1:95:46,49:46:1648:49:1752:-129.366,0,-120.011	0/1:73:36,37:36:1262:37:1324:-97.4869,0,-91.9033	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:105:0,105:0:0:105:3745:-337.236,-31.6082,0	0/1:35:18,17:18:644:17:604:-44.1546,0,-47.7545	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	1/1:35:0,35:0:0:35:1233:-111.272,-10.5361,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:13:3,10:3:93:10:352:-28.1048,0,-4.76334	0/1:72:38,34:38:1353:34:1207:-87.2611,0,-100.394	1/1:123:0,123:0:0:123:4399:-396.083,-37.0267,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:230:1,229:1:36:229:8154:-730.277,-65.6386,0	0/1:159:85,74:85:3060:74:2625:-188.626,0,-227.764	1/1:70:2,68:2:72:68:2421:-211.308,-14.2354,0	1/1:65:0,65:0:0:65:2315:-208.61,-19.567,0	1/1:96:2,94:2:72:94:3326:-292.721,-22.0622,0	1/1:88:0,87:0:0:87:3095:-278.547,-26.1896,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	0/1:64:38,26:38:1356:26:936:-65.2926,0,-103.075	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:147:80,67:80:2859:67:2392:-171.286,0,-213.296	1/1:81:0,81:0:0:81:2894:-260.696,-24.3834,0	1/1:138:0,138:0:0:138:4943:-445.019,-41.5421,0	0/1:157:72,85:72:2565:85:3046:-227.107,0,-183.837	0/1:123:72,50:72:2568:50:1792:-124.624,0,-194.433	1/1:60:3,57:3:108:57:2044:-174.157,-7.98663,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:99:57,42:57:2021:42:1480:-103.69,0,-152.359	0/1:113:62,50:62:2197:50:1773:-125.854,0,-163.998	1/1:200:0,200:0:0:200:7127:-641.488,-60.206,0	1/1:115:0,115:0:0:115:4112:-370.263,-34.6185,0	1/1:53:0,53:0:0:53:1891:-170.468,-15.9546,0	0/1:77:34,43:34:1216:43:1540:-115.714,0,-86.5673	0/1:157:78,79:78:2781:79:2836:-208.212,0,-203.268	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:87:1,86:1:36:86:3062:-272.211,-22.5913,0	1/1:65:0,65:0:0:65:2327:-209.689,-19.567,0	1/1:32:0,32:0:0:32:1139:-102.71,-9.63296,0	0/1:72:35,37:35:1241:37:1316:-97.0676,0,-90.3183	0/1:54:36,17:36:1284:17:612:-39.099,0,-99.5491	1/1:103:0,103:0:0:103:3681:-331.487,-31.0061,0	1/1:100:0,100:0:0:100:3571:-321.598,-30.103,0
chr04	31528541	.	A	G	32281.6	PASS	AB=0.544311;ABP=62.6668;AC=49;AF=0.260638;AN=188;AO=1931;CIGAR=1X;DP=7273;DPB=7273;DPRA=0.96792;EPP=4187.44;EPPR=11531.4;GTI=0;LEN=1;MEANALT=1.05556;MQM=59.9839;MQMR=59.9963;NS=94;NUMALT=1;ODDS=0.624498;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68018;QR=190732;RO=5337;RPL=1;RPP=4187.44;RPPR=11531.4;RPR=1930;RUN=1;SAF=0;SAP=4196.12;SAR=1931;SRF=0;SRP=11592.2;SRR=5337;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:11,7:11:396:7:239:-16.4242,0,-30.5642	0/0:176:176,0:176:6299:0:0:0,-52.9813,-567.002	0/0:85:84,1:84:3002:1:32:0,-22.3882,-267.208	0/0:264:264,0:264:9376:0:0:0,-79.4719,-843.804	0/1:46:25,21:25:900:21:731:-52.2624,0,-67.4736	0/1:81:41,40:41:1472:40:1383:-100.378,0,-108.393	0/1:100:37,63:37:1332:63:2227:-170.591,0,-90.0794	0/0:143:142,0:142:5076:0:0:0,-42.7463,-456.665	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:58:58,0:58:2052:0:0:0,-17.4597,-184.949	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0491	0/1:43:22,21:22:792:21:748:-54.701,0,-58.6614	0/0:41:41,0:41:1467:0:0:0,-12.3422,-132.325	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.293	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.87	0/1:37:16,21:16:567:21:701:-52.2608,0,-40.2226	0/1:49:23,26:23:816:26:894:-66.0184,0,-59.0112	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:28:10,18:10:356:18:625:-48.1437,0,-23.9524	0/1:169:60,109:60:2152:109:3848:-295.644,0,-143.073	0/1:114:45,69:45:1601:69:2441:-185.627,0,-110.061	0/1:122:28,94:28:1008:94:3306:-261.034,0,-54.3107	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:44:42,2:42:1499:2:72:0,-6.4086,-128.367	0/1:35:21,14:21:737:14:500:-34.8001,0,-56.1146	0/0:200:200,0:200:7164:0:0:0,-60.206,-644.816	0/1:189:69,118:69:2475:118:4162:-318.113,0,-166.35	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:300:300,0:300:10745:0:0:0,-90.309,-966.953	0/1:187:118,69:118:4212:69:2424:-162.12,0,-322.967	0/1:92:63,29:63:2241:29:1028:-65.1383,0,-174.257	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:18:13,5:13:468:5:176:-10.7665,0,-37.0411	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:88:40,48:40:1440:48:1685:-125.442,0,-103.407	0/1:185:73,112:73:2600:112:3930:-298.203,0,-178.556	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:233:231,1:231:8231:1:36:0,-66.6005,-737.203	0/1:19:6,13:6:216:13:464:-36.3779,0,-14.0709	0/1:84:37,47:37:1332:47:1661:-124.489,0,-94.8959	0/1:50:18,32:18:644:32:1128:-86.774,0,-43.2391	0/1:37:11,26:11:392:26:913:-71.3459,0,-24.4819	0/0:61:60,1:60:2148:1:36:0,-14.7646,-189.989	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.874	0/1:149:83,66:83:2980:66:2368:-168.525,0,-223.578	0/1:86:42,44:42:1512:44:1567:-115.432,0,-110.486	0/1:114:47,67:47:1688:67:2394:-181.4,0,-117.89	0/1:144:61,83:61:2151:83:2932:-220.763,0,-150.506	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:108:108,0:108:3888:0:0:0,-32.5112,-350.112	0/1:59:40,19:40:1440:19:672:-43.0461,0,-112.137	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:14:9,5:9:324:5:176:-11.9702,0,-25.2914	0/1:104:58,46:58:2068:46:1619:-114.691,0,-155.084	0/0:61:61,0:61:2187:0:0:0,-18.3628,-197.095	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:218:218,0:218:7795:0:0:0,-65.6245,-701.578	0/1:133:46,87:46:1648:87:3022:-232.173,0,-108.572	0/0:77:72,5:72:2556:5:172:0,-7.36133,-214.471	0/0:99:99,0:99:3533:0:0:0,-29.802,-318.174	0/0:172:172,0:172:6147:0:0:0,-51.7772,-553.33	0/0:108:108,0:108:3850:0:0:0,-32.5112,-346.696	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:44:23,21:23:815:21:752:-54.7609,0,-60.4254	0/1:23:10,13:10:347:13:464:-35.1738,0,-24.6399	0/1:110:60,50:60:2128:50:1763:-125.839,0,-158.673	0/0:70:66,4:66:2357:4:144:0,-7.75848,-199.073	0/0:131:131,0:131:4678:0:0:0,-39.4349,-421.181	0/1:174:75,99:75:2696:99:3503:-262.61,0,-190.505	0/1:87:43,44:43:1548:44:1525:-111.347,0,-113.423	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:106:41,64:41:1467:64:2271:-172.684,0,-100.357	0/1:89:35,54:35:1247:54:1929:-147.094,0,-85.7424	0/0:162:162,0:162:5803:0:0:0,-48.7669,-522.383	0/0:67:67,0:67:2385:0:0:0,-20.169,-214.906	0/0:40:40,0:40:1412:0:0:0,-12.0412,-127.375	0/1:46:28,18:28:1008:18:623:-42.5457,0,-77.189	0/1:79:43,36:43:1535:36:1261:-90.0088,0,-114.661	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:40:39,1:39:1392:1:27:0,-9.34142,-122.879	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/1:58:15,43:15:521:43:1502:-118.009,0,-29.7566	0/1:43:18,25:18:644:25:866:-65.3084,0,-45.3463	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:54:54,0:54:1905:0:0:0,-16.2556,-171.723
chr04	31532659	.	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chr04	31596330	.	G	T	40471.1	PASS	AB=0.532152;ABP=42.5266;AC=47;AF=0.25;AN=188;AO=2365;CIGAR=1X;DP=9438;DPB=9438;DPRA=0.985763;EPP=5138.54;EPPR=15333.6;GTI=1;LEN=1;MEANALT=1.08929;MQM=59.9514;MQMR=59.9654;NS=94;NUMALT=1;ODDS=0.776423;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84505;QR=252216;RO=7060;RPL=2365;RPP=5138.54;RPPR=15333.6;RPR=0;RUN=1;SAF=0;SAP=5138.54;SAR=2365;SRF=0;SRP=15333.6;SRR=7060;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:43,35:43:1532:35:1252:-89.5047,0,-114.693	0/0:181:180,1:180:6413:1:30:0,-51.4869,-574.071	0/0:139:139,0:139:4958:0:0:0,-41.8432,-446.369	0/0:196:196,0:196:7012:0:0:0,-59.0019,-631.144	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	0/1:56:23,33:23:824:33:1184:-90.0106,0,-57.6256	0/1:80:34,46:34:1215:46:1618:-121.823,0,-85.5734	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.621	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:89:89,0:89:3169:0:0:0,-26.7917,-285.434	0/1:131:60,71:60:2106:71:2552:-190.467,0,-150.374	0/1:75:35,40:35:1260:40:1436:-106.96,0,-91.1282	0/0:96:96,0:96:3427:0:0:0,-28.8989,-308.636	0/0:109:107,1:107:3809:1:36:0,-29.2728,-339.405	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.547	0/1:81:38,43:38:1364:43:1530:-113.605,0,-98.6773	0/1:84:30,54:30:1076:54:1936:-149.201,0,-71.8663	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/1:80:42,38:42:1490:38:1360:-98.6182,0,-110.311	0/1:69:28,41:28:992:41:1472:-112.005,0,-68.8233	0/1:176:75,101:75:2684:101:3596:-270.867,0,-188.795	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:115:112,3:112:4007:3:108:0,-24.5433,-350.744	0/1:41:19,22:19:680:22:792:-59.2634,0,-49.1869	0/0:418:414,0:414:14785:0:0:0,-124.626,-1329.28	0/1:161:76,85:76:2724:85:3025:-224.012,0,-196.937	0/0:40:39,1:39:1383:1:30:0,-9.04292,-121.77	0/0:112:112,0:112:3995:0:0:0,-33.7154,-359.741	0/1:153:66,87:66:2363:87:3116:-234.609,0,-166.87	0/1:163:83,80:83:2960:80:2853:-207.94,0,-217.566	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:4,6:4:144:6:211:-16.323,0,-10.3033	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:9:2,7:2:68:7:248:-19.9549,0,-3.74844	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:195:99,96:99:3548:96:3414:-248.76,0,-260.827	0/1:137:63,74:63:2248:74:2646:-197.04,0,-161.338	0/0:110:110,0:110:3935:0:0:0,-33.1133,-354.339	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:126:125,1:125:4431:1:36:0,-34.3315,-395.367	0/1:48:26,22:26:936:22:788:-56.7954,0,-70.11	0/1:145:60,85:60:2152:85:3048:-230.9,0,-150.298	0/1:97:52,45:52:1860:45:1608:-115.81,0,-138.48	0/1:76:36,40:36:1288:40:1428:-105.939,0,-93.3453	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:89:89,0:89:3172:0:0:0,-26.7917,-285.706	0/1:174:83,91:83:2959:91:3252:-240.519,0,-214.164	0/1:74:29,45:29:1035:45:1612:-123.094,0,-71.1868	0/1:204:117,87:117:4200:87:3120:-219.616,0,-316.77	0/1:189:74,115:74:2644:115:4077:-310.221,0,-181.312	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:178:178,0:178:6362:0:0:0,-53.5833,-572.18	0/1:29:14,15:14:504:15:536:-39.8449,0,-36.9682	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:152:148,0:148:5296:0:0:0,-44.5524,-476.413	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:137:63,74:63:2251:74:2654:-197.865,0,-161.599	0/0:116:114,1:114:4075:1:36:0,-31.38,-363.336	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:194:194,0:194:6947:0:0:0,-58.3998,-625.293	0/1:234:106,128:106:3783:128:4572:-341.204,0,-270.227	0/0:99:96,3:96:3436:3:108:0,-19.7268,-299.378	0/0:82:82,0:82:2923:0:0:0,-24.6845,-263.304	0/0:179:176,3:176:6288:3:108:0,-43.8092,-555.937	0/0:116:113,2:113:4040:2:72:0,-28.1416,-356.952	0/0:71:71,0:71:2523:0:0:0,-21.3731,-227.322	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/1:104:61,42:61:2188:42:1508:-104.649,0,-165.82	0/1:29:9,20:9:320:20:710:-55.4964,0,-20.4125	0/1:62:31,31:31:1103:31:1093:-80.0138,0,-80.9159	0/0:102:101,1:101:3599:1:36:0,-27.1068,-320.49	0/0:177:177,0:177:6327:0:0:0,-53.2823,-569.519	0/1:161:71,90:71:2556:90:3224:-241.916,0,-181.821	0/1:60:18,42:18:644:42:1493:-116.601,0,-40.2288	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.372	0/1:7:6,1:6:208:1:36:-1.49107,0,-16.9519	0/1:125:54,70:54:1944:70:2504:-188.073,0,-137.696	0/1:74:37,37:37:1328:37:1328:-97.546,0,-97.546	0/0:239:239,0:239:8547:0:0:0,-71.9462,-769.229	0/0:114:114,0:114:4087:0:0:0,-34.3174,-368.015	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605	0/1:132:68,64:68:2409:64:2293:-166.894,0,-177.33	0/1:155:81,74:81:2887:74:2648:-191.749,0,-213.407	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/0:73:73,0:73:2595:0:0:0,-21.9752,-233.799	0/0:88:88,0:88:3121:0:0:0,-26.4906,-281.117	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.722	0/1:160:88,72:88:3144:72:2572:-183.56,0,-235.017	0/1:69:20,49:20:711:49:1760:-137.913,0,-43.5446	0/0:127:127,0:127:4515:0:0:0,-38.2308,-406.521	0/0:129:129,0:129:4632:0:0:0,-38.8329,-417.041
chr04	31596339	.	A	G	39385.7	PASS	AB=0.529276;ABP=35.3051;AC=47;AF=0.25;AN=188;AO=2323;CIGAR=1X;DP=9324;DPB=9324;DPRA=1.13944;EPP=5047.34;EPPR=15196.8;GTI=1;LEN=1;MEANALT=1.03448;MQM=59.9561;MQMR=59.9644;NS=94;NUMALT=1;ODDS=0.215633;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82763;QR=250560;RO=6997;RPL=2323;RPP=5047.34;RPPR=15196.8;RPR=0;RUN=1;SAF=0;SAP=5047.34;SAR=2323;SRF=0;SRP=15196.8;SRR=6997;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:42,33:42:1512:33:1172:-83.2102,0,-113.797	0/0:180:180,0:180:6452:0:0:0,-54.1854,-580.576	0/0:137:137,0:137:4896:0:0:0,-41.2411,-440.793	0/0:191:191,0:191:6844:0:0:0,-57.4967,-616.029	0/1:33:12,21:12:432:21:744:-57.3503,0,-29.2872	0/1:55:23,32:23:824:32:1144:-86.7129,0,-57.9267	0/1:80:33,46:33:1184:46:1639:-123.658,0,-82.7272	0/0:102:101,0:101:3612:0:0:0,-30.404,-324.926	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/1:128:60,68:60:2156:68:2428:-180.233,0,-155.775	0/1:74:34,40:34:1224:40:1430:-106.721,0,-88.1908	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.968	0/0:108:107,1:107:3835:1:36:0,-28.913,-341.746	0/0:84:83,1:83:2988:1:36:0,-21.6908,-265.555	0/1:82:40,42:40:1432:42:1492:-109.885,0,-104.493	0/1:84:30,54:30:1068:54:1923:-148.031,0,-71.1455	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.975	0/1:81:42,39:42:1500:39:1373:-99.484,0,-110.911	0/1:67:26,41:26:932:41:1460:-111.527,0,-64.0299	0/1:178:75,103:75:2688:103:3648:-274.945,0,-188.57	0/1:15:6,9:6:216:9:316:-24.2634,0,-15.2751	0/0:92:92,0:92:3280:0:0:0,-27.6948,-295.421	0/0:114:111,3:111:3976:3:108:0,-24.2422,-347.955	0/1:41:18,23:18:636:23:820:-61.7803,0,-45.2258	0/0:413:412,1:412:14749:1:36:0,-120.727,-1322.52	0/1:165:81,84:81:2892:84:2988:-219.482,0,-210.847	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.844	0/0:113:113,0:113:4044:0:0:0,-34.0164,-364.148	0/1:152:66,86:66:2364:86:3080:-231.672,0,-167.262	0/1:162:84,78:84:3012:78:2772:-200.955,0,-222.544	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:193:97,96:97:3480:96:3415:-249.464,0,-255.312	0/1:131:60,71:60:2152:71:2532:-188.688,0,-154.508	0/0:107:106,1:106:3781:1:36:0,-28.6119,-336.886	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:125:125,0:125:4453:0:0:0,-37.6287,-400.941	0/1:47:26,21:26:936:21:756:-54.2188,0,-70.4111	0/1:140:59,81:59:2120:81:2871:-216.484,0,-148.924	0/1:95:52,43:52:1872:43:1536:-109.935,0,-140.161	0/1:75:36,39:36:1296:39:1396:-103.362,0,-94.3667	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.554	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/1:168:82,85:82:2940:85:3024:-221.8,0,-214.239	0/1:73:28,45:28:989:45:1612:-123.395,0,-67.3468	0/1:203:117,86:117:4192:86:3068:-215.241,0,-316.352	0/1:182:71,111:71:2548:111:3951:-300.988,0,-174.783	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:178:178,0:178:6392:0:0:0,-53.5833,-574.877	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/0:152:152,0:152:5398:0:0:0,-45.7566,-485.94	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:15:8,7:8:280:7:252:-18.5135,0,-21.0239	0/1:135:61,74:61:2184:74:2644:-197.568,0,-156.174	0/0:117:116,1:116:4164:1:36:0,-31.6222,-371.33	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:195:195,0:195:6976:0:0:0,-58.7008,-627.903	0/1:232:104,128:104:3732:128:4564:-341.089,0,-266.221	0/0:101:97,4:97:3472:4:129:0,-18.4764,-300.764	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:176:173,3:173:6184:3:108:0,-42.9061,-546.582	0/0:115:113,2:113:4052:2:72:0,-27.7817,-358.03	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/1:99:58,41:58:2084:41:1468:-102.614,0,-158.028	0/1:29:9,20:9:324:20:712:-55.6768,0,-20.776	0/1:60:30,30:30:1076:30:1063:-77.9199,0,-79.0911	0/0:100:98,2:98:3508:2:72:0,-23.2663,-309.064	0/0:170:169,1:169:6064:1:36:0,-47.5768,-542.262	0/1:158:70,88:70:2516:88:3152:-236.342,0,-179.126	0/1:58:18,40:18:644:40:1424:-110.998,0,-40.8309	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.219	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:124:53,71:53:1904:71:2544:-191.883,0,-134.31	0/1:74:37,37:37:1324:37:1320:-96.8257,0,-97.1859	0/0:234:234,0:234:8376:0:0:0,-70.441,-753.846	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.778	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/1:134:71,63:71:2536:63:2238:-161.345,0,-188.153	0/1:151:80,71:80:2857:71:2525:-181.96,0,-211.911	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/0:87:86,1:86:3075:1:36:0,-22.5913,-273.38	0/0:82:81,0:81:2904:0:0:0,-24.3834,-261.236	0/1:155:89,66:89:3191:66:2355:-165.548,0,-240.748	0/1:68:20,48:20:716:48:1703:-133.085,0,-44.2977	0/0:129:129,0:129:4624:0:0:0,-38.8329,-416.323	0/0:126:126,0:126:4503:0:0:0,-37.9298,-405.439
chr04	31603255	.	AC	GT,AT	113328	PASS	AB=0.516372,0.483186;ABP=13.5333,14.1098;AC=140,48;AF=0.744681,0.255319;AN=188;AO=7278,2195;CIGAR=2X,1M1X;DP=9480;DPB=9480;DPRA=0,1.01525;EPP=15807,4769.39;EPPR=5.18177;GTI=2;LEN=2,1;MEANALT=1.6383,2.03704;MQM=22.2641,44.3822;MQMR=58;NS=94;NUMALT=2;ODDS=1.41631;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=258060,78576;QR=36;RO=1;RPL=7278,2195;RPP=15807,4769.39;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=7278,2195;SAP=15807,4769.39;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:52:0,31,21:0:0:31,21:1100,752:-105.104,-59.1376,-49.8057,-46.2521,0,-39.9305	1/1:76:0,76,0:0:0:76,0:2702,0:-135.997,-22.8783,0,-135.997,-22.8783,-135.997	1/1:168:0,168,0:0:0:168,0:5990,0:-300.56,-50.573,0,-300.56,-50.573,-300.56	1/1:275:0,275,0:0:0:275,0:9720,0:-559.948,-82.7833,0,-559.948,-82.7833,-559.948	1/2:15:0,9,6:0:0:9,6:324,212:-31.4188,-17.31,-14.6008,-14.4007,0,-12.5945	1/2:24:0,13,11:0:0:13,11:464,396:-50.9844,-31.7157,-27.8023,-19.5496,0,-16.2383	1/2:100:0,64,36:0:0:64,36:2285,1292:-215.026,-103.584,-84.3183,-111.748,0,-100.911	1/1:110:0,109,1:0:0:109,1:3904,36:-194.936,-32.8123,0,-192.083,-29.6106,-191.782	1/1:116:0,116,0:0:0:116,0:4107,0:-207.341,-34.9195,0,-207.341,-34.9195,-207.341	1/1:113:0,113,0:0:0:113,0:4023,0:-230.974,-34.0164,0,-230.974,-34.0164,-230.974	1/2:37:0,17,20:0:0:17,20:608,712:-87.2565,-57.5856,-52.4681,-29.9555,0,-23.9349	1/2:98:0,45,53:0:0:45,53:1587,1896:-216.046,-149.268,-135.721,-67.0441,0,-51.0895	1/1:79:0,79,0:0:0:79,0:2814,0:-141.424,-23.7814,0,-141.424,-23.7814,-141.424	1/1:32:0,32,0:0:0:32,0:1110,0:-59.664,-9.63296,0,-59.664,-9.63296,-59.664	1/1:66:0,66,0:0:0:66,0:2360,0:-134.941,-19.868,0,-134.941,-19.868,-134.941	1/2:51:0,27,24:0:0:27,24:968,864:-111.473,-69.0737,-60.9459,-42.6831,0,-35.4584	1/2:23:0,11,12:0:0:11,12:385,432:-50.7975,-34.5233,-31.2119,-16.5451,0,-12.9328	1/1:22:0,22,0:0:0:22,0:788,0:-39.5766,-6.62266,0,-39.5766,-6.62266,-39.5766	1/2:18:0,9,9:0:0:9,9:319,324:-39.3214,-26.0129,-23.3036,-13.583,0,-10.8737	1/2:278:0,140,138:0:0:140,138:4950,4948:-638.936,-396.324,-354.18,-242.902,0,-201.36	1/2:252:0,143,109:0:0:143,109:5040,3897:-535.323,-311.376,-268.328,-224.236,0,-191.423	1/2:64:0,18,46:0:0:18,46:635,1650:-167.842,-133.584,-128.166,-34.5335,0,-20.6861	1/1:106:0,105,0:0:0:105,0:3702,0:-213.745,-31.6082,0,-213.745,-31.6082,-213.745	1/2:87:0,77,10:0:0:77,10:2749,360:-149.683,-28.6998,-5.52045,-121.315,0,-118.305	1/2:61:0,44,17:0:0:44,17:1556,603:-117.61,-48.5433,-35.298,-69.3763,0,-64.2588	1/1:307:0,307,0:0:0:307,0:10852,0:-675.174,-92.4162,0,-675.174,-92.4162,-675.174	1/2:364:0,197,167:0:0:197,167:6939,5991:-782.54,-473.854,-414.551,-308.97,0,-258.698	1/1:43:0,43,0:0:0:43,0:1528,0:-80.7406,-12.9443,0,-80.7406,-12.9443,-80.7406	1/1:400:0,399,0:0:0:399,0:14002,0:-874.25,-120.111,0,-874.25,-120.111,-874.25	1/2:106:0,58,48:0:0:58,48:2051,1699:-226.046,-135.043,-117.583,-91.2864,0,-76.8369	1/2:108:0,47,61:0:0:47,61:1649,2196:-258.086,-176.892,-162.744,-81.4755,0,-63.1127	1/2:11:0,3,8:0:0:3,8:104,288:-27.6449,-22.966,-22.0629,-4.92505,0,-2.51681	1/2:21:0,14,7:0:0:14,7:504,252:-41.6042,-19.7926,-15.5782,-22.1088,0,-20.0016	1/1:6:0,6,0:0:0:6,0:214,0:-10.9357,-1.80618,0,-10.9357,-1.80618,-10.9357	1/2:8:0,4,4:0:0:4,4:144,144:-17.6377,-11.7559,-10.5517,-6.15641,0,-4.95229	1/1:36:0,36,0:0:0:36,0:1296,0:-64.6533,-10.8371,0,-64.6533,-10.8371,-64.6533	1/2:200:0,74,126:0:0:74,126:2625,4501:-502.093,-361.571,-339.295,-140.806,0,-102.876	1/2:121:1,68,52:1:36:68,52:2416,1860:-251.566,-145.044,-127.511,-103.815,0,-91.1003	1/1:25:0,24,0:0:0:24,0:834,0:-42.824,-7.22472,0,-42.824,-7.22472,-42.824	1/1:3:0,3,0:0:0:3,0:108,0:-5.84244,-0.90309,0,-5.84244,-0.90309,-5.84244	1/1:148:0,145,3:0:0:145,3:5112,108:-270.823,-43.6494,0,-262.175,-34.6513,-261.272	1/2:45:0,20,25:0:0:20,25:714,891:-101.879,-70.5092,-64.4886,-31.6392,0,-24.1134	1/2:113:0,59,53:0:0:59,53:2083,1887:-241.101,-148.695,-130.934,-92.4753,0,-76.5208	1/2:41:0,21,20:0:0:21,20:752,720:-93.243,-56.7556,-50.434,-36.7756,0,-30.755	1/2:63:0,22,41:0:0:22,41:768,1468:-155.055,-116.953,-110.33,-38.3714,0,-26.0292	1/1:160:0,160,0:0:0:160,0:5654,0:-352.518,-48.1648,0,-352.518,-48.1648,-352.518	1/1:94:0,94,0:0:0:94,0:3331,0:-168.114,-28.2968,0,-168.114,-28.2968,-168.114	1/2:208:0,111,97:0:0:111,97:3917,3472:-469.898,-276.864,-243.449,-193.327,0,-164.127	1/2:126:0,76,50:0:0:76,50:2676,1791:-274.737,-143.488,-120.61,-131.55,0,-116.498	1/2:133:0,61,72:0:0:61,72:2156,2580:-312.003,-206.58,-188.217,-105.706,0,-84.032	1/2:159:0,84,75:0:0:84,75:2991,2687:-377.831,-217.278,-191.991,-160.857,0,-138.28	1/2:7:0,5,2:0:0:5,2:180,68:-14.4743,-5.80253,-4.29738,-8.97763,0,-8.37557	1/1:138:0,136,1:0:0:136,1:4874,36:-243.292,-40.9401,0,-240.439,-38.0076,-240.138	1/2:65:0,33,32:0:0:33,32:1177,1142:-154.505,-92.0659,-82.1319,-62.7374,0,-53.1044	1/2:18:0,10,8:0:0:10,8:358,288:-37.9655,-23.1615,-20.1512,-15.0871,0,-12.6788	1/1:197:0,197,0:0:0:197,0:6992,0:-368.475,-59.3029,0,-368.475,-59.3029,-368.475	1/1:59:0,59,0:0:0:59,0:2104,0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chr04	31603290	.	C	T	146183	PASS	AB=0.475496;ABP=25.8907;AC=139;AF=0.747312;AN=186;AO=7130;CIGAR=1X;DP=9457;DPB=9457;DPRA=0;EPP=15485.6;EPPR=5053.86;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.9257;MQMR=59.9635;NS=93;NUMALT=1;ODDS=1.22899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=249889;QR=82921;RO=2326;RPL=0;RPP=15485.6;RPPR=5053.86;RPR=7130;RUN=1;SAF=0;SAP=15485.6;SAR=7130;SRF=0;SRP=5053.86;SRR=2326;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:7,5:7:248:5:176:-12.5727,0,-19.0518	1/1:208:0,208:0:0:208:7303:-657.337,-62.6142,0	1/1:144:0,144:0:0:144:5023:-452.229,-43.3483,0	1/1:249:0,249:0:0:249:8666:-779.835,-74.9565,0	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/1:7:1,6:1:32:6:216:-17.6833,0,-1.0921	0/1:109:45,64:45:1603:64:2228:-167.973,0,-111.747	1/1:136:5,131:5:180:131:4617:-399.074,-24.388,0	1/1:72:0,72:0:0:72:2547:-229.446,-21.6742,0	1/1:156:0,156:0:0:156:5458:-490.504,-46.9607,0	0/1:57:32,25:32:1143:25:877:-62.0864,0,-86.02	0/1:65:32,33:32:1136:33:1151:-84.3284,0,-82.9819	1/1:77:0,77:0:0:77:2693:-242.599,-23.1793,0	1/1:73:0,73:0:0:73:2554:-230.112,-21.9752,0	1/1:66:0,66:0:0:66:2291:-206.454,-19.868,0	0/1:67:47,20:47:1684:20:700:-43.1545,0,-131.678	0/1:88:46,41:46:1622:41:1438:-103.164,0,-119.631	1/1:76:0,76:0:0:76:2669:-240.456,-22.8783,0	0/1:26:18,8:18:631:8:280:-17.7125,0,-49.2889	0/1:270:143,127:143:5128:127:4475:-321.649,0,-380.383	0/1:95:40,55:40:1432:55:1917:-143.582,0,-100.58	0/1:78:59,19:59:2108:19:668:-36.9653,0,-166.509	1/1:72:0,72:0:0:72:2530:-227.949,-21.6742,0	1/1:137:5,132:5:165:132:4612:-400.07,-26.0675,0	0/1:51:20,31:20:720:31:1061:-80.4423,0,-49.7762	1/1:376:1,375:1:36:375:13250:-1188.72,-109.589,0	0/1:265:126,139:126:4498:139:4828:-354.914,0,-325.216	1/1:23:0,23:0:0:23:800:-72.3185,-6.92369,0	1/1:276:2,274:2:72:274:9594:-856.474,-76.2476,0	0/1:171:91,80:91:3237:80:2827:-203.195,0,-240.074	0/1:96:44,52:44:1572:52:1832:-136.26,0,-112.873	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:11:2,9:2:72:9:320:-25.8297,0,-3.52539	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:212:128,84:128:4519:84:2925:-199.659,0,-343.06	0/1:227:135,92:135:4795:92:3227:-222.316,0,-363.361	1/1:30:0,30:0:0:30:1032:-93.1866,-9.0309,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:174:0,174:0:0:174:6064:-545.877,-52.3792,0	0/1:33:15,18:15:540:18:632:-47.2728,0,-39.0025	0/1:102:31,71:31:1116:71:2503:-194.816,0,-70.0466	0/1:71:46,25:46:1627:25:866:-56.8808,0,-125.345	0/1:73:44,29:44:1576:29:1027:-70.767,0,-120.156	1/1:79:0,79:0:0:79:2741:-246.933,-23.7814,0	1/1:120:0,120:0:0:120:4222:-380.115,-36.1236,0	0/1:216:103,113:103:3692:113:3963:-291.474,0,-267.46	0/1:135:82,53:82:2940:53:1818:-123.259,0,-224.194	0/1:276:139,137:139:4951:137:4847:-353.301,0,-362.655	0/1:142:71,71:71:2544:71:2506:-183.046,0,-186.464	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:159:0,159:0:0:159:5565:-500.61,-47.8638,0	0/1:30:9,21:9:324:21:744:-58.2534,0,-20.475	0/1:6:4,2:4:136:2:72:-5.03054,0,-10.7694	1/1:185:0,185:0:0:185:6485:-583.749,-55.6906,0	1/1:23:0,23:0:0:23:806:-72.8582,-6.92369,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:15:4,11:4:144:11:364:-28.563,0,-8.79817	1/1:109:1,108:1:36:108:3795:-338.152,-29.214,0	.:.:.:.:.:.:.:.	1/1:306:0,306:0:0:306:10807:-972.551,-92.1152,0	0/1:196:105,91:105:3760:91:3200:-229.223,0,-279.595	1/1:107:7,100:7:252:100:3509:-292.996,-9.18125,0	1/1:64:0,64:0:0:64:2245:-202.313,-19.2659,0	1/1:197:2,195:2:72:195:6833:-608.212,-52.4662,0	1/1:98:1,97:1:36:97:3426:-304.829,-25.9027,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:52:0,52:0:0:52:1826:-164.621,-15.6536,0	0/1:87:43,44:43:1532:44:1560:-114.502,0,-111.983	0/1:24:14,10:14:504:10:356:-25.1565,0,-38.4734	0/1:74:33,41:33:1163:41:1414:-105.249,0,-82.6928	1/1:120:1,119:1:36:119:4158:-370.802,-32.5253,0	1/1:96:0,96:0:0:96:3366:-303.158,-28.8989,0	0/1:205:111,94:111:3969:94:3252:-231.193,0,-295.688	0/1:44:18,26:18:644:26:902:-68.2475,0,-45.0453	1/1:193:1,192:1:36:192:6727:-601.917,-54.5005,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:129:69,60:69:2467:60:2115:-151.786,0,-183.451	0/1:140:65,75:65:2308:75:2610:-193.007,0,-165.75	1/1:183:0,183:0:0:183:6379:-574.218,-55.0885,0	1/1:75:0,75:0:0:75:2655:-239.197,-22.5773,0	1/1:59:0,59:0:0:59:2092:-188.548,-17.7608,0	0/1:129:75,54:75:2654:54:1851:-128.031,0,-200.274	0/1:155:76,79:76:2707:79:2760:-201.984,0,-197.214	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	1/1:86:0,86:0:0:86:2999:-270.13,-25.8886,0	1/1:75:0,75:0:0:75:2622:-236.23,-22.5773,0	1/1:27:0,27:0:0:27:939:-84.8227,-8.12781,0	0/1:70:47,23:47:1658:23:816:-52.6896,0,-128.434	0/1:76:52,24:52:1856:24:860:-54.8343,0,-144.441	1/1:163:0,163:0:0:163:5674:-510.794,-49.0679,0	1/1:82:0,82:0:0:82:2891:-260.429,-24.6845,0
chr04	31603297	.	ACT	TCT,TCG	207640	PASS	AB=0.474165,0.523608;ABP=29.0409,24.7463;AC=139,47;AF=0.747312,0.252688;AN=186;AO=7285,2380;CIGAR=1X2M,1X1M1X;DP=9687;DPB=9687;DPRA=0,1.16046;EPP=15822.2,5171.11;EPPR=7.35324;GTI=1;LEN=1,3;MEANALT=1.7957,2.13793;MQM=59.9274,59.9559;MQMR=60;NS=93;NUMALT=2;ODDS=1.24638;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=260451,83656;QR=67;RO=2;RPL=0,0;RPP=15822.2,5171.11;RPPR=7.35324;RPR=7285,2380;RUN=1,1;SAF=0,0;SAP=15822.2,5171.11;SAR=7285,2380;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:13:0,6,7:0:0:6,7:212,243:-37.3694,-20.1011,-18.295,-17.6186,0,-15.5114	1/1:211:1,208,0:1:33:208,0:7452,0:-667.41,-59.9444,0,-667.711,-62.6142,-670.379	1/1:144:0,144,0:0:0:144,0:5129,0:-461.753,-43.3483,0,-461.753,-43.3483,-461.753	1/1:255:0,255,0:0:0:255,0:9121,0:-820.75,-76.7627,0,-820.75,-76.7627,-820.75	1/2:19:0,10,9:0:0:10,9:360,309:-54.8144,-25.4314,-22.4211,-29.734,0,-27.0247	1/2:7:0,6,1:0:0:6,1:216,36:-20.9217,-3.29724,-1.49106,-17.9843,0,-17.6833	1/2:113:0,66,47:0:0:66,47:2368,1655:-328.238,-135.083,-115.215,-193.51,0,-179.362	1/1:145:0,140,5:0:0:140,5:4993,175:-449.008,-42.1442,0,-434.77,-27.5562,-433.265	1/1:73:0,73,0:0:0:73,0:2620,0:-236.012,-21.9752,0,-236.012,-21.9752,-236.012	1/1:160:0,160,0:0:0:160,0:5736,0:-516.356,-48.1648,0,-516.356,-48.1648,-516.356	1/2:59:0,25,34:0:0:25,34:879,1208:-170.338,-98.7915,-91.2657,-71.8998,0,-61.6648	1/2:65:0,32,32:0:0:32,32:1144,1114:-183.877,-90.593,-80.96,-93.2961,0,-83.6632	1/1:78:0,78,0:0:0:78,0:2792,0:-251.503,-23.4803,0,-251.503,-23.4803,-251.503	1/1:73:0,73,0:0:0:73,0:2592,0:-233.53,-21.9752,0,-233.53,-21.9752,-233.53	1/1:70:0,69,0:0:0:69,0:2453,0:-220.772,-20.7711,0,-220.772,-20.7711,-220.772	1/2:68:0,21,47:0:0:21,47:752,1662:-197.047,-135.719,-129.398,-61.6846,0,-47.5362	1/2:89:0,41,47:0:0:41,47:1472,1646:-253.992,-133.913,-121.571,-120.093,0,-105.944	1/1:76:0,76,0:0:0:76,0:2715,0:-244.593,-22.8783,0,-244.593,-22.8783,-244.593	1/2:26:0,8,18:0:0:8,18:288,621:-74.2977,-50.7938,-48.3855,-23.8592,0,-18.4406	1/2:275:0,130,145:0:0:130,145:4646,5125:-796.557,-417.747,-378.613,-379.165,0,-335.516	1/2:100:0,58,42:0:0:58,42:2082,1450:-287.716,-118.147,-100.687,-169.919,0,-157.276	1/2:81:0,20,61:0:0:20,61:716,2150:-233.795,-175.404,-169.383,-58.7471,0,-40.3843	1/1:74:0,74,0:0:0:74,0:2644,0:-238.204,-22.2762,0,-238.204,-22.2762,-238.204	1/1:141:0,134,7:0:0:134,7:4792,229:-430.919,-40.338,0,-412.425,-21.5163,-410.318	1/2:53:0,32,21:0:0:32,21:1137,756:-154.692,-62.0456,-52.4126,-93.004,0,-86.6824	1/1:385:1,383,1:1:34:383,1:13691,36:-1228.5,-112.546,0,-1225.87,-112.347,-1228.32	1/2:271:0,141,130:0:0:141,130:5029,4553:-780.767,-370.808,-328.363,-410.311,0,-371.177	1/1:23:0,23,0:0:0:23,0:813,0:-73.4891,-6.92369,0,-73.4891,-6.92369,-73.4891	1/1:280:0,278,2:0:0:278,2:9916,72:-892.003,-83.6863,0,-886.128,-77.4517,-885.526	1/2:175:0,81,94:0:0:81,94:2908,3280:-504.343,-267.126,-242.742,-237.572,0,-209.275	1/2:97:0,53,44:0:0:53,44:1866,1562:-279.533,-127.625,-111.67,-152.262,0,-139.016	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/2:11:0,9,2:0:0:9,2:320,72:-32.3074,-6.23466,-3.52539,-26.4317,0,-25.8297	1/1:3:0,3,0:0:0:3,0:93,0:-8.67673,-0.90309,0,-8.67673,-0.90309,-8.67673	1/2:12:0,3,9:0:0:3,9:108,314:-34.7024,-25.8874,-24.9843,-9.17208,0,-6.46281	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:215:0,84,131:0:0:84,131:3012,4620:-622.174,-376.534,-351.248,-245.996,0,-206.561	1/2:232:0,95,137:0:0:95,137:3394,4859:-672.784,-396.07,-367.472,-277.071,0,-235.83	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1529,-9.0309,0,-97.1529,-9.0309,-97.1529	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:176:0,175,0:0:0:175,0:6261,0:-563.223,-52.6803,0,-563.223,-52.6803,-563.223	1/2:34:0,19,15:0:0:19,15:684,532:-99.512,-43.6981,-37.9785,-56.1708,0,-51.6553	1/2:100:0,69,31:0:0:69,31:2464,1092:-290.145,-89.2573,-68.4863,-201.241,0,-191.909	1/2:72:0,25,47:0:0:25,47:863,1614:-201.508,-131.397,-123.871,-70.4556,0,-56.3072	1/2:74:0,29,45:0:0:29,45:1044,1586:-214.671,-129.483,-120.753,-85.5449,0,-71.9986	1/1:79:0,79,0:0:0:79,0:2836,0:-255.478,-23.7814,0,-255.478,-23.7814,-255.478	1/1:120:0,119,0:0:0:119,0:4265,0:-383.7,-35.8226,0,-383.7,-35.8226,-383.7	1/2:217:0,112,105:0:0:112,105:4011,3715:-629.784,-302.946,-269.231,-327.194,0,-295.586	1/2:144:0,58,86:0:0:58,86:2072,3009:-414.081,-245.152,-227.693,-169.283,0,-143.394	1/2:283:0,137,145:0:0:137,145:4901,5112:-815.859,-416.22,-374.979,-399.635,0,-355.985	1/2:146:0,74,72:0:0:74,72:2652,2546:-424.012,-207.718,-185.441,-216.65,0,-194.976	1/2:3:0,2,1:0:0:2,1:72,34:-8.98601,-3.09788,-2.49582,-6.23466,0,-5.93363	1/1:165:0,165,0:0:0:165,0:5906,0:-531.485,-49.67,0,-531.485,-49.67,-531.485	1/2:31:0,22,9:0:0:22,9:792,302:-89.4355,-24.795,-18.1724,-64.983,0,-62.2737	1/2:6:0,2,4:0:0:2,4:72,136:-17.2523,-11.3708,-10.7688,-6.23466,0,-5.03054	1/1:188:0,186,0:0:0:186,0:6651,0:-598.303,-55.9916,0,-598.303,-55.9916,-598.303	1/1:22:0,22,0:0:0:22,0:792,0:-71.60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chr04	31667834	.	C	A	31957.3	PASS	AB=0.578899;ABP=180.849;AC=46;AF=0.244681;AN=188;AO=1916;CIGAR=1X;DP=6417;DPB=6417;DPRA=1.24415;EPP=4163.55;EPPR=9746.42;GTI=3;LEN=1;MEANALT=1.03846;MQM=42.63;MQMR=59.8008;NS=94;NUMALT=1;ODDS=2.85417;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68587;QR=160769;RO=4499;RPL=0;RPP=4163.55;RPPR=9772.46;RPR=1916;RUN=1;SAF=1916;SAP=4163.55;SAR=0;SRF=4496;SRP=9746.42;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:10,24:10:356:24:864:-65.2961,0,-22.1462	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/0:88:88,0:88:3130:0:0:0,-26.4906,-281.823	0/0:85:84,1:84:3012:1:36:0,-22.0665,-267.784	0/1:18:11,7:11:392:7:252:-17.189,0,-30.2015	0/1:21:11,10:11:396:10:360:-25.3007,0,-29.6611	0/1:90:35,55:35:1260:55:1972:-146.858,0,-86.6081	0/0:62:62,0:62:2192:0:0:0,-18.6639,-197.54	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.019	0/0:63:63,0:63:2229:0:0:0,-18.9649,-200.868	0/1:99:28,71:28:1008:71:2547:-192.875,0,-61.2214	0/1:122:40,82:40:1428:82:2933:-217.138,0,-92.0885	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.987	0/0:60:59,1:59:2120:1:36:0,-14.5408,-187.54	0/0:70:70,0:70:2478:0:0:0,-21.0721,-223.273	0/1:71:27,43:27:963:43:1548:-114.564,0,-65.5596	0/1:25:10,15:10:338:15:536:-38.8273,0,-23.2202	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.916	0/1:66:26,40:26:923:40:1438:-103.957,0,-63.5188	0/1:55:30,25:30:1076:25:896:-62.0525,0,-80.5962	0/1:77:42,35:42:1500:35:1256:-87.7648,0,-112.115	0/1:44:13,31:13:468:31:1112:-85.7518,0,-29.2143	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.781	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5049	0/1:83:39,44:39:1400:44:1584:-114.666,0,-101.312	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.909	0/1:212:102,110:102:3639:110:3914:-281.087,0,-263.891	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8426	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:71:47,24:47:1672:24:864:-54.3157,0,-129.391	0/1:46:19,27:19:676:27:968:-71.2038,0,-47.3183	0/1:15:4,11:4:144:11:396:-30.6946,0,-8.79817	0/1:31:5,26:5:180:26:913:-70.9259,0,-7.21856	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:14:5,9:5:180:9:324:-24.3273,0,-12.3376	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.957	0/1:207:99,108:99:3522:108:3880:-281.186,0,-254.875	0/1:86:52,34:52:1859:34:1203:-80.1788,0,-141.699	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.921	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:63:60,3:60:2156:3:108:0,-9.10607,-184.436	0/1:49:18,31:18:635:31:1108:-82.8292,0,-42.7265	0/1:352:141,211:141:5032:211:7500:-551.572,0,-347.057	0/1:49:21,28:21:756:28:1000:-73.6885,0,-53.6158	0/1:42:21,21:21:756:21:756:-54.2559,0,-55.7216	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.913	0/0:70:70,0:70:2487:0:0:0,-21.0721,-224.073	0/1:66:28,38:28:1004:38:1360:-100.015,0,-70.8079	0/1:106:47,59:47:1675:59:2124:-155.403,0,-119.127	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.023	0/1:29:22,7:22:792:7:252:-13.2379,0,-62.8749	0/1:10:6,4:6:216:4:144:-10.0174,0,-16.7802	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.173	0/1:40:13,27:13:464:27:972:-74.4327,0,-30.0529	0/1:13:7,6:7:252:6:212:-14.926,0,-19.1156	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.821	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4987	0/1:8:2,6:2:68:6:216:-17.1086,0,-4.04947	0/1:72:26,46:26:908:46:1641:-123.235,0,-60.358	0/0:78:78,0:78:2795:0:0:0,-23.4803,-251.789	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.541	0/1:105:22,83:22:788:83:2965:-228.405,0,-39.5668	0/0:41:39,2:39:1396:2:72:0,-5.65231,-119.249	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.822	0/0:170:166,4:166:5941:4:144:0,-38.1474,-521.728	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.136	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.208	0/1:54:26,28:26:923:28:1008:-73.0032,0,-67.1311	0/1:23:4,19:4:144:19:669:-51.9214,0,-6.38993	0/1:117:49,68:49:1751:68:2436:-175.879,0,-122.653	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.319	0/0:183:182,1:182:6477:1:36:0,-51.4919,-578.853	0/1:74:41,33:41:1463:33:1184:-82.3548,0,-109.68	0/1:58:22,36:22:788:36:1296:-95.1931,0,-53.7851	0/0:37:37,0:37:1320:0:0:0,-11.1381,-118.961	0/1:12:4,8:4:144:8:284:-21.4936,0,-9.70126	0/1:56:33,23:33:1176:23:828:-56.4267,0,-89.2864	0/1:43:26,17:26:932:17:612:-40.6983,0,-71.2512	0/0:86:86,0:86:3083:0:0:0,-25.8886,-277.69	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.008	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.184	0/1:39:17,22:17:612:22:788:-57.9711,0,-43.6709	0/1:137:38,98:38:1368:98:3508:-266.617,0,-82.1285	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.349	0/0:157:157,0:157:5632:0:0:0,-47.2617,-506.963	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.879	0/1:135:64,71:64:2291:71:2556:-184.485,0,-165.765	0/1:113:30,83:30:1072:83:2976:-228.157,0,-62.7714	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.115	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.448
chr04	31667851	.	G	A	32132.4	PASS	AB=0.579044;ABP=181.174;AC=46;AF=0.244681;AN=188;AO=1912;CIGAR=1X;DP=6417;DPB=6417;DPRA=1.14598;EPP=4137.51;EPPR=9646.95;GTI=3;LEN=1;MEANALT=1.01961;MQM=42.5905;MQMR=59.8016;NS=94;NUMALT=1;ODDS=2.92922;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68568;QR=161010;RO=4501;RPL=1910;RPP=4137.51;RPPR=9621.09;RPR=2;RUN=1;SAF=1912;SAP=4154.87;SAR=0;SRF=4498;SRP=9750.77;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:10,24:10:352:24:864:-65.2961,0,-21.7832	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:88:87,0:87:3115:0:0:0,-26.1896,-280.116	0/0:85:84,1:84:3001:1:36:0,-22.0665,-266.794	0/1:18:11,7:11:396:7:252:-17.189,0,-30.5642	0/1:20:11,9:11:396:9:324:-22.4691,0,-29.9621	0/1:89:35,54:35:1248:54:1944:-144.729,0,-85.8285	0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.74	0/0:80:80,0:80:2841:0:0:0,-24.0824,-255.914	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.419	0/1:99:27,71:27:972:71:2536:-191.938,0,-57.9422	0/1:124:43,81:43:1526:81:2912:-214.549,0,-100.297	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.226	0/0:58:57,1:57:2031:1:36:0,-13.9387,-179.533	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:71:27,44:27:957:44:1575:-116.993,0,-65.0692	0/1:25:10,15:10:356:15:532:-38.5261,0,-24.8555	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.225	0/1:68:28,40:28:1004:40:1424:-101.987,0,-70.1991	0/1:56:30,26:30:1072:26:932:-64.9832,0,-79.9348	0/1:78:43,35:43:1548:35:1256:-87.4637,0,-116.133	0/1:46:13,33:13:453:33:1188:-91.8123,0,-27.2522	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.392	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5049	0/1:83:39,44:39:1400:44:1584:-114.666,0,-101.312	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.104	0/1:210:100,110:100:3600:110:3952:-284.906,0,-260.982	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.081	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.637	0/1:69:46,23:46:1631:23:828:-51.7487,0,-126.304	0/1:46:19,27:19:680:27:972:-71.5239,0,-47.6794	0/1:14:4,10:4:144:10:356:-27.5044,0,-9.0992	0/1:31:5,26:5:180:26:926:-72.3488,0,-7.21856	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:14:5,9:5:180:9:324:-24.3273,0,-12.3376	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.744	0/1:207:99,108:99:3546:108:3884:-280.375,0,-257.031	0/1:85:51,34:51:1832:34:1209:-80.6636,0,-139.572	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.478	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:61:58,3:58:2075:3:108:0,-8.50401,-177.15	0/1:47:17,30:17:612:30:1076:-80.5019,0,-41.265	0/1:357:145,212:145:5191:212:7577:-556.93,0,-359.855	0/1:50:21,29:21:756:29:1044:-77.1965,0,-53.3148	0/1:42:21,21:21:756:21:748:-53.615,0,-55.7216	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.104	0/0:74:73,0:73:2608:0:0:0,-21.9752,-234.594	0/1:65:27,38:27:972:38:1360:-100.316,0,-68.231	0/1:106:48,58:48:1709:58:2084:-151.867,0,-122.182	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.189	0/1:30:22,8:22:792:8:288:-16.132,0,-62.5739	0/1:9:6,3:6:216:3:108:-7.14955,0,-17.0812	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.89	0/1:40:13,27:13:459:27:968:-74.0986,0,-29.5995	0/1:14:8,6:8:288:6:216:-14.9294,0,-22.0496	0/0:70:70,0:70:2480:0:0:0,-21.0721,-223.444	0/0:36:36,0:36:1268:0:0:0,-10.8371,-114.42	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4987	0/1:9:2,7:2:72:7:252:-19.9761,0,-4.12745	0/1:71:25,46:25:900:46:1652:-124.501,0,-59.9448	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.783	0/1:105:21,84:21:744:84:3020:-233.176,0,-35.6063	0/0:39:37,2:37:1332:2:72:0,-5.05025,-113.492	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3338	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.947	0/0:171:167,4:167:5971:4:144:0,-38.4484,-524.431	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.828	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.966	0/1:54:26,28:26:932:28:1008:-73.0032,0,-67.9432	0/1:23:4,19:4:140:19:680:-52.9523,0,-6.02089	0/1:114:47,67:47:1688:67:2404:-173.933,0,-117.89	0/0:98:98,0:98:3520:0:0:0,-29.5009,-316.672	0/0:180:179,0:179:6415:0:0:0,-53.8844,-576.457	0/1:71:38,33:38:1356:33:1188:-83.5778,0,-100.958	0/1:57:22,35:22:783:35:1256:-92.0615,0,-53.6342	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.74	0/1:12:4,8:4:144:8:284:-21.4936,0,-9.70126	0/1:56:33,23:33:1184:23:828:-56.4267,0,-90.006	0/1:41:24,17:24:864:17:608:-40.9994,0,-65.737	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.971	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.926	0/0:78:78,0:78:2795:0:0:0,-23.4803,-251.784	0/1:38:17,21:17:612:21:756:-55.46,0,-43.9719	0/1:136:39,97:39:1389:97:3475:-264.106,0,-84.3669	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.549	0/0:159:159,0:159:5686:0:0:0,-47.8638,-511.821	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.52	0/1:136:65,71:65:2340:71:2534:-182.365,0,-169.872	0/1:113:30,83:30:1067:83:2984:-228.796,0,-62.3201	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.237	0/0:98:98,0:98:3492:0:0:0,-29.5009,-314.485
chr04	31757325	.	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chr04	31758105	.	TAAGCAGC	TAAGTAGC,CAAGTAGC	172292	PASS	AB=0.463448,0.526459;ABP=45.5536,25.3031;AC=141,47;AF=0.75,0.25;AN=188;AO=6031,1954;CIGAR=4M1X3M,1X3M1X3M;DP=8052;DPB=8052.38;DPRA=28.8495,0.879152;EPP=13099.2,4246.07;EPPR=13.8677;GTI=1;LEN=1,8;MEANALT=2.17204,2.59259;MQM=59.717,52.197;MQMR=60;NS=94;NUMALT=2;ODDS=0.269585;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=216124,69238;QR=178;RO=5;RPL=0,0;RPP=13099.2,4246.07;RPPR=13.8677;RPR=6031,1954;RUN=1,1;SAF=6031,1954;SAP=13099.2,4246.07;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:85:0,44,40:0:0:44,40:1571,1423:-243.032,-114.968,-101.723,-128.093,0,-116.051	1/1:86:0,85,0:0:0:85,0:3048,0:-274.205,-25.5876,0,-274.205,-25.5876,-274.205	1/1:188:0,188,0:0:0:188,0:6733,0:-605.924,-56.5936,0,-605.924,-56.5936,-605.924	1/1:241:0,239,0:0:0:239,0:8558,0:-769.53,-71.9462,0,-769.53,-71.9462,-769.53	1/2:38:0,26,12:0:0:26,12:936,420:-110.762,-34.4267,-26.5999,-76.6877,0,-73.0753	1/2:16:0,11,5:0:0:11,5:396,179:-47.1834,-14.8691,-11.5578,-32.6714,0,-31.1663	1/2:51:0,32,19:0:0:32,19:1152,671:-148.917,-54.9151,-45.2822,-94.3572,0,-88.6376	1/1:107:0,106,0:0:0:106,0:3804,0:-342.199,-31.9092,0,-342.199,-31.9092,-342.199	1/1:127:0,127,0:0:0:127,0:4535,0:-408.212,-38.2308,0,-408.212,-38.2308,-408.212	1/1:96:0,93,0:0:0:93,0:3344,0:-300.814,-27.9958,0,-300.814,-27.9958,-300.814	1/2:40:0,17,23:0:0:17,23:608,821:-116.615,-67.0419,-61.9244,-49.9299,0,-43.0062	1/2:120:0,59,61:0:0:59,61:2104,2165:-346.596,-175.081,-157.32,-171.869,0,-153.506	1/1:73:0,72,0:0:0:72,0:2584,0:-232.517,-21.6742,0,-232.517,-21.6742,-232.517	1/1:43:0,42,0:0:0:42,0:1512,0:-135.979,-12.6433,0,-135.979,-12.6433,-135.979	1/1:81:0,81,0:0:0:81,0:2903,0:-261.505,-24.3834,0,-261.505,-24.3834,-261.505	1/2:56:0,22,34:0:0:22,34:792,1210:-162.869,-98.2433,-91.6206,-64.983,0,-54.748	1/2:43:0,23,20:0:0:23,20:824,697:-123.816,-56.6278,-49.7041,-67.5396,0,-61.519	1/1:29:0,28,0:0:0:28,0:1008,0:-90.6784,-8.42884,0,-90.6784,-8.42884,-90.6784	1/2:29:0,12,16:0:0:12,16:432,569:-81.3785,-46.1255,-42.5132,-35.306,0,-30.4895	1/2:147:0,65,80:0:0:65,80:2336,2823:-419.715,-229.138,-209.571,-190.641,0,-166.558	1/2:179:0,80,99:0:0:80,99:2840,3509:-516.456,-285.145,-261.063,-231.665,0,-201.863	1/2:62:0,18,44:0:0:18,44:633,1563:-179.01,-127.497,-122.078,-51.8658,0,-38.6205	1/1:125:1,124,0:1:36:124,0:4452,0:-396.968,-34.0305,0,-397.269,-37.3277,-400.206	1/1:92:0,84,8:0:0:84,8:2999,285:-269.737,-25.2865,0,-246.567,-1.76114,-244.159	1/2:76:0,29,47:0:0:29,47:1028,1631:-216.33,-132.582,-123.852,-84.0999,0,-69.9515	1/1:209:0,209,0:0:0:209,0:7492,0:-674.288,-62.9153,0,-674.288,-62.9153,-674.288	1/2:251:0,111,139:0:0:111,139:3956,4902:-719.616,-397.175,-363.761,-322.445,0,-280.602	1/1:37:0,36,0:0:0:36,0:1296,0:-116.638,-10.8371,0,-116.638,-10.8371,-116.638	1/1:230:0,230,0:0:0:230,0:8236,0:-741.241,-69.2369,0,-741.241,-69.2369,-741.241	1/2:105:0,61,42:0:0:61,42:2184,1484:-298.236,-120.405,-102.042,-177.896,0,-165.253	1/2:82:0,35,46:0:0:35,46:1260,1625:-234.58,-131.767,-121.231,-102.824,0,-88.9762	1/2:5:0,4,1:0:0:4,1:140,36:-14.6682,-3.2882,-2.08408,-11.7371,0,-11.4361	1/2:20:0,7,13:0:0:7,13:252,452:-57.3936,-36.8266,-34.7194,-20.9217,0,-17.0084	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:8:0,2,6:0:0:2,6:72,216:-23.4971,-17.6206,-17.0185,-6.23466,0,-4.42848	1/1:26:0,26,0:0:0:26,0:923,0:-83.3868,-7.82678,0,-83.3868,-7.82678,-83.3868	1/2:190:0,92,96:0:0:92,96:3300,3412:-546.897,-277.734,-250.039,-269.211,0,-240.312	1/2:70:0,35,34:0:0:35,34:1256,1194:-198.952,-96.4971,-85.961,-102.45,0,-92.2153	1/1:45:0,44,1:0:0:44,1:1568,36:-141.035,-13.2453,0,-138.115,-9.96758,-137.814	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:100:0,95,4:0:0:95,4:3404,144:-306.194,-28.5979,0,-294.477,-16.8175,-293.273	1/2:31:0,13,18:0:0:13,18:468,648:-91.0906,-52.9033,-48.9899,-38.5463,0,-33.1277	1/2:212:0,113,98:0:0:113,98:4052,3494:-614.208,-283.716,-249.7,-330.488,0,-300.987	1/2:53:1,25,26:1:35:25,26:900,929:-145.776,-72.6461,-67.9679,-70.5924,0,-65.613	1/2:54:0,23,31:0:0:23,31:824,1096:-156.612,-89.4654,-82.5417,-67.5025,0,-58.1706	1/1:145:0,145,0:0:0:145,0:5208,0:-468.844,-43.6494,0,-468.844,-43.6494,-468.844	1/1:86:0,84,1:0:0:84,1:3011,36:-270.83,-25.2865,0,-267.91,-22.3176,-267.609	1/2:156:0,71,80:0:0:71,80:2537,2844:-437.685,-230.917,-209.544,-206.788,0,-182.705	1/2:68:0,36,31:0:0:36,31:1283,1108:-194.624,-90.0955,-79.2585,-104.525,0,-95.1931	1/1:149:0,149,0:0:0:149,0:5348,0:-481.451,-44.8535,0,-481.451,-44.8535,-481.451	1/2:198:0,93,100:0:0:93,100:3348,3547:-561.718,-288.55,-260.554,-273.2,0,-243.097	1/2:8:0,5,3:0:0:5,3:180,107:-23.7552,-9.06576,-7.56061,-15.0469,0,-14.1438	1/1:141:0,140,0:0:0:140,0:5028,0:-452.156,-42.1442,0,-452.156,-42.1442,-452.156	1/2:42:0,20,22:0:0:20,22:720,784:-122.954,-64.2062,-58.1856,-59.1058,0,-52.4832	2/2:3:0,0,3:0:0:0,3:0,107:-9.93121,-9.93121,-9.93121,-0.90309,-0.90309,0	1/1:126:0,124,2:0:0:124,2:4456,72:-400.796,-37.3277,0,-394.938,-31.1102,-394.336	1/1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chr04	31767921	.	T	A	31292.6	PASS	AB=0.480618;ABP=15.8889;AC=47;AF=0.25;AN=188;AO=1908;CIGAR=1X;DP=8443;DPB=8443;DPRA=1.14385;EPP=4146.18;EPPR=14165.4;GTI=1;LEN=1;MEANALT=1.12727;MQM=59.9292;MQMR=59.971;NS=94;NUMALT=1;ODDS=3.94167;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68007;QR=233905;RO=6522;RPL=0;RPP=4146.18;RPPR=14165.4;RPR=1908;RUN=1;SAF=1908;SAP=4146.18;SAR=0;SRF=6522;SRP=14165.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:8,4:8:288:4:144:-9.69654,0,-22.655	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:160:160,0:160:5729:0:0:0,-48.1648,-515.725	0/0:200:198,2:198:7104:2:72:0,-53.3693,-632.58	0/1:51:30,21:30:1080:21:744:-51.9318,0,-82.1607	0/1:51:24,27:24:860:27:972:-72.4454,0,-62.3693	0/1:114:52,62:52:1868:62:2209:-164.756,0,-134.082	0/0:174:173,1:173:6200:1:36:0,-48.7809,-554.453	0/0:111:109,0:109:3924:0:0:0,-32.8123,-352.991	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/1:52:20,32:20:716:32:1140:-87.2556,0,-48.7955	0/1:65:39,26:39:1396:26:929:-64.3611,0,-106.372	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:94:94,0:94:3359:0:0:0,-28.2968,-302.522	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:52:22,30:22:783:30:1061:-80.1458,0,-55.1394	0/1:27:10,17:10:360:17:604:-46.5628,0,-24.6165	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:33:16,17:16:572:17:612:-45.4794,0,-41.8794	0/1:218:108,109:108:3867:109:3869:-282.714,0,-282.541	0/1:149:78,71:78:2800:71:2533:-183.366,0,-207.386	0/1:127:54,73:54:1940:73:2575:-193.765,0,-136.644	0/0:78:77,1:77:2749:1:21:0,-21.3804,-245.551	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:102:50,52:50:1788:52:1864:-137.334,0,-130.498	0/0:220:219,1:219:7840:1:36:0,-62.6283,-702.03	0/1:237:119,118:119:4268:118:4194:-306.297,0,-312.953	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/0:236:236,0:236:8456:0:0:0,-71.0431,-761.041	0/1:116:59,56:59:2124:56:1982:-143.672,0,-156.45	0/1:78:45,33:45:1612:33:1184:-83.3876,0,-121.89	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.1696	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:128:53,74:53:1908:74:2641:-199.345,0,-133.407	0/1:128:61,66:61:2188:66:2356:-173.708,0,-158.595	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:125:122,3:122:4377:3:108:0,-27.5536,-384.026	0/1:41:24,17:24:864:17:604:-42.3484,0,-65.7403	0/1:118:68,50:68:2440:50:1792:-126.041,0,-184.325	0/1:54:33,21:33:1188:21:756:-52.1116,0,-90.973	0/1:35:15,20:15:536:20:716:-54.2317,0,-38.0388	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:113:113,0:113:4047:0:0:0,-34.0164,-364.417	0/1:135:75,60:75:2688:60:2146:-152.766,0,-201.526	0/1:95:33,62:33:1184:62:2217:-171.196,0,-78.2705	0/0:150:150,0:150:5363:0:0:0,-45.1545,-482.802	0/1:97:44,53:44:1580:53:1885:-140.727,0,-113.292	0/1:24:11,13:11:396:13:464:-34.8728,0,-28.758	0/0:189:188,0:188:6756:0:0:0,-56.5936,-607.75	0/1:97:59,38:59:2120:38:1349:-92.5084,0,-161.869	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.3438	0/0:118:118,0:118:4220:0:0:0,-35.5215,-379.981	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:105:58,47:58:2088:47:1684:-120.239,0,-156.582	0/0:95:95,0:95:3407:0:0:0,-28.5978,-306.843	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:147:146,0:146:5244:0:0:0,-43.9504,-471.735	0/1:142:68,72:68:2448:72:2573:-188.456,0,-178.07	0/1:128:113,14:113:4060:14:504:-7.10746,0,-326.995	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.59	0/0:192:190,1:190:6824:1:36:0,-54.2768,-610.421	0/0:258:257,1:257:9228:1:36:0,-74.0675,-826.887	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.838	0/1:42:22,20:22:788:20:720:-52.4855,0,-58.6015	0/1:36:23,13:23:828:13:437:-28.8134,0,-64.007	0/1:130:58,72:58:2072:72:2542:-189.895,0,-147.427	0/0:110:110,0:110:3932:0:0:0,-33.1133,-354.073	0/0:139:139,0:139:4972:0:0:0,-41.8432,-447.629	0/1:166:96,70:96:3452:70:2478:-173.301,0,-260.92	0/1:109:66,43:66:2364:43:1540:-106.069,0,-180.206	0/0:136:136,0:136:4892:0:0:0,-40.9401,-440.429	0/1:22:9,13:9:324:13:449:-34.1148,0,-22.8832	0/1:134:66,68:66:2372:68:2425:-178.166,0,-173.4	0/1:106:77,29:77:2752:29:1044:-62.1202,0,-216.01	0/0:176:176,0:176:6305:0:0:0,-52.9813,-567.54	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/1:38:18,20:18:648:20:716:-53.3286,0,-47.2127	0/1:92:47,45:47:1680:45:1616:-118.035,0,-123.792	0/0:18:17,1:17:612:1:36:0,-1.82026,-51.8152	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.705	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/1:112:52,60:52:1860:60:2156:-160.592,0,-133.964	0/1:69:19,50:19:684:50:1796:-141.151,0,-41.1193	0/0:182:181,0:181:6488:0:0:0,-54.4864,-583.637	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884
chr04	31787898	.	ATAGA	TTAGA,TTAGC	255773	PASS	AB=0.480459,0.517503;ABP=20.9166,17.3773;AC=141,45;AF=0.758065,0.241935;AN=186;AO=9019,2824;CIGAR=1X4M,1X3M1X;DP=11874;DPB=11874.6;DPRA=0,1.18815;EPP=19587.5,6135.25;EPPR=22.5536;GTI=1;LEN=1,5;MEANALT=1.78495,2.22222;MQM=59.9544,59.7606;MQMR=56.2222;NS=93;NUMALT=2;ODDS=1.49753;PAIRED=0,0;PAIREDR=0;PAO=0,3;PQA=0,108;PQR=0;PRO=0;QA=323383,99294;QR=256;RO=9;RPL=0,0;RPP=19587.5,6135.25;RPPR=22.5536;RPR=9019,2824;RUN=1,1;SAF=9019,2824;SAP=19587.5,6135.25;SAR=0,0;SRF=9;SRP=22.5536;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,13,30:0:0:13,30:464,1047:-123.339,-85.5096,-81.5962,-38.1841,0,-29.1532	1/1:217:0,216,0:0:0:216,0:7744,0:-696.631,-65.0225,0,-696.631,-65.0225,-696.631	1/1:160:0,158,1:0:0:158,1:5668,30:-509.944,-47.5627,0,-507.917,-45.5603,-507.616	1/1:259:1,258,0:1:26:258,0:9236,0:-828.61,-75.3669,0,-828.911,-77.6657,-830.949	1/2:71:0,28,43:0:0:28,43:1008,1494:-203.688,-121.435,-113.007,-82.2477,0,-69.3034	1/2:96:0,33,63:0:0:33,63:1188,2204:-276.465,-179.527,-169.593,-97.2946,0,-78.3297	1/2:132:0,75,57:0:0:75,57:2696,1999:-382.616,-162.666,-140.089,-219.944,0,-202.786	1/1:228:0,227,1:0:0:227,1:8140,36:-732.254,-68.3338,0,-729.316,-65.0366,-729.015	1/1:187:0,187,0:0:0:187,0:6693,0:-602.445,-56.2926,0,-602.445,-56.2926,-602.445	1/1:115:1,114,0:1:24:114,0:4072,0:-364.268,-32.2186,0,-364.569,-34.3174,-366.426	1/2:85:0,42,43:0:0:42,43:1504,1519:-246.712,-124.057,-111.413,-123.011,0,-110.067	1/2:106:0,59,47:0:0:59,47:2112,1643:-306.239,-134.004,-116.243,-172.588,0,-158.44	1/1:79:0,79,0:0:0:79,0:2840,0:-255.838,-23.7814,0,-255.838,-23.7814,-255.838	1/1:60:0,60,0:0:0:60,0:2152,0:-193.947,-18.0618,0,-193.947,-18.0618,-193.947	1/1:95:0,94,0:0:0:94,0:3372,0:-303.332,-28.2968,0,-303.332,-28.2968,-303.332	1/2:65:0,27,38:0:0:27,38:964,1335:-187.603,-109.008,-100.881,-78.949,0,-67.5099	1/2:77:0,29,48:0:0:29,48:1044,1707:-224.647,-139.46,-130.73,-85.5449,0,-71.0955	1/1:95:0,95,0:0:0:95,0:3411,0:-307.203,-28.5979,0,-307.203,-28.5979,-307.203	1/2:37:0,18,19:0:0:18,19:648,680:-108.681,-55.8065,-50.388,-53.2333,0,-47.5138	1/2:182:0,94,88:0:0:94,88:3380,3056:-524.173,-248.408,-220.111,-275.758,0,-249.267	1/2:189:0,96,92:0:0:96,92:3441,3209:-541.628,-260.98,-232.081,-280.642,0,-252.947	1/2:117:0,44,73:0:0:44,73:1580,2557:-337.272,-208.386,-195.14,-129.242,0,-107.266	1/1:128:0,122,2:0:0:122,2:4384,70:-394.366,-36.7257,0,-388.671,-31.0327,-388.069	1/1:235:1,217,17:1:27:217,17:7776,597:-697.087,-63.1992,0,-648.8,-16.659,-645.811	1/2:82:0,42,40:0:0:42,40:1504,1420:-238.709,-116.054,-103.411,-123.011,0,-110.97	1/1:424:0,423,1:0:0:423,1:15184,36:-1365.87,-127.336,0,-1362.94,-124.038,-1362.64	1/2:254:1,125,128:1:28:125,128:4492,4508:-731.016,-364.859,-329.448,-364.315,0,-328.001	1/1:70:0,70,0:0:0:70,0:2508,0:-225.972,-21.0721,0,-225.972,-21.0721,-225.972	1/1:273:0,273,0:0:0:273,0:9777,0:-879.872,-82.1812,0,-879.872,-82.1812,-879.872	1/2:216:0,88,126:0:0:88,126:3164,4483:-623.451,-365.316,-338.826,-258.133,0,-220.203	1/2:124:0,73,51:0:0:73,51:2620,1778:-358.67,-144.951,-122.976,-214.072,0,-198.72	1/2:2:0,1,1:0:0:1,1:36,35:-6.14,-3.1976,-2.89657,-3.29724,0,-2.99621	1/2:11:0,4,7:0:0:4,7:144,249:-32.3891,-20.6379,-19.4337,-12.1095,0,-10.0023	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:5:0,1,4:0:0:1,4:36,135:-14.2206,-11.2787,-10.9776,-3.29724,0,-2.09312	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:276:0,137,137:0:0:137,137:4928,4867:-798.657,-396.587,-355.346,-402.067,0,-360.826	1/2:179:0,97,82:0:0:97,82:3472,2883:-518.142,-235.005,-205.805,-283.492,0,-258.807	1/1:64:0,64,0:0:0:64,0:2290,0:-206.087,-19.2659,0,-206.087,-19.2659,-206.087	.:.:.:.:.:.:.:.	1/1:238:0,232,5:0:0:232,5:8320,173:-748.477,-69.839,0,-734.421,-55.6701,-732.916	1/2:26:0,16,9:0:0:16,9:576,318:-72.8902,-25.8924,-21.076,-46.9941,0,-44.2848	1/2:189:0,92,96:0:0:92,96:3304,3357:-542.051,-272.53,-244.835,-269.515,0,-240.616	1/2:123:0,66,57:0:0:66,57:2368,2032:-358.874,-165.993,-146.125,-193.238,0,-176.08	1/2:111:0,55,56:0:0:55,56:1976,1988:-323.534,-162.335,-145.778,-161.556,0,-144.698	1/1:163:0,163,0:0:0:163,0:5824,0:-524.272,-49.0679,0,-524.272,-49.0679,-524.272	1/1:154:0,153,1:0:0:153,1:5476,22:-492.747,-46.0576,0,-491.069,-44.1588,-490.768	1/2:213:0,104,109:0:0:104,109:3717,3845:-616.496,-313.438,-282.131,-303.412,0,-270.6	1/2:171:0,80,91:0:0:80,91:2872,3150:-490.616,-256.334,-232.252,-234.634,0,-207.24	1/1:179:0,179,0:0:0:179,0:6397,0:-575.816,-53.8844,0,-575.816,-53.8844,-575.816	1/2:170:0,93,77:0:0:93,77:3344,2675:-490.562,-217.82,-189.825,-273.094,0,-249.915	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:99:0,99,0:0:0:99,0:3548,0:-319.511,-29.802,0,-319.511,-29.802,-319.511	1/2:62:0,33,29:0:0:33,29:1180,1016:-179.242,-83.0226,-73.0886,-96.5731,0,-87.8433	1/2:10:0,7,3:0:0:7,3:252,108:-29.734,-9.17208,-7.06487,-20.9217,0,-20.0187	1/1:121:0,121,0:0:0:121,0:4340,0:-390.774,-36.4246,0,-390.774,-36.4246,-390.774	1/1:88:0,88,0:0:0:88,0:3160,0:-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chr04	31841296	.	T	C	27555.4	PASS	AB=0.469607;ABP=31.3892;AC=47;AF=0.25;AN=188;AO=1669;CIGAR=1X;DP=7369;DPB=7369;DPRA=1.01079;EPP=3558.04;EPPR=12265.6;GTI=3;LEN=1;MEANALT=1.01923;MQM=59.9826;MQMR=59.9905;NS=94;NUMALT=1;ODDS=0.298475;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59561;QR=203768;RO=5699;RPL=8;RPP=3558.04;RPPR=12274.2;RPR=1661;RUN=1;SAF=1669;SAP=3627.2;SAR=0;SRF=5698;SRP=12369.5;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:29,21:29:1032:21:756:-53.3157,0,-78.142	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:101:101,0:101:3607:0:0:0,-30.404,-324.836	0/0:150:150,0:150:5372:0:0:0,-45.1545,-483.612	0/1:90:56,34:56:2012:34:1220:-83.0141,0,-154.26	0/1:50:32,18:32:1144:18:644:-43.2391,0,-88.218	0/1:96:54,42:54:1927:42:1504:-106.756,0,-144.807	0/0:114:114,0:114:4064:0:0:0,-34.3174,-365.949	0/0:169:168,1:168:5976:1:36:0,-47.2758,-534.351	0/0:112:112,0:112:3994:0:0:0,-33.7154,-359.65	0/1:61:30,31:30:1076:31:1107:-81.5773,0,-78.79	0/1:116:62,54:62:2211:54:1918:-137.976,0,-164.335	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/1:62:35,27:35:1260:27:963:-68.3221,0,-95.0416	0/1:46:25,21:25:891:21:752:-54.1589,0,-66.6614	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:44:21,23:21:756:23:824:-61.238,0,-55.1219	0/1:133:57,76:57:2036:76:2732:-206.085,0,-143.475	0/1:143:58,85:58:2076:85:3048:-231.502,0,-144.063	0/1:75:33,42:33:1188:42:1493:-112.085,0,-84.6513	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:67:63,4:63:2256:4:144:0,-6.85539,-189.989	0/1:70:32,38:32:1144:38:1364:-101.989,0,-82.1928	0/0:198:198,0:198:7071:0:0:0,-59.6039,-636.452	0/1:159:86,73:86:3064:73:2599:-186.295,0,-228.124	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:175:175,0:175:6272:0:0:0,-52.6802,-564.573	0/1:114:66,48:66:2368:48:1707:-119.598,0,-179.061	0/1:93:52,41:52:1839:41:1459:-103.572,0,-137.794	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0098	0/1:223:131,92:131:4691:92:3283:-228.56,0,-355.22	0/1:85:43,42:43:1527:42:1491:-108.896,0,-112.135	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:110:110,0:110:3935:0:0:0,-33.1133,-354.334	0/1:48:22,26:22:792:26:936:-70.11,0,-57.1562	0/1:64:38,26:38:1360:26:924:-64.2117,0,-103.435	0/1:59:27,32:27:968:32:1144:-85.5087,0,-69.6766	0/1:78:37,41:37:1328:41:1444:-106.774,0,-96.3419	0/0:102:102,0:102:3647:0:0:0,-30.7051,-328.434	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.029	0/1:145:66,79:66:2360:79:2831:-211.378,0,-169.009	0/1:81:59,22:59:2120:22:777:-45.8669,0,-166.685	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:48:30,18:30:1076:18:644:-43.8412,0,-82.7034	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:42:24,18:24:856:18:633:-44.6518,0,-64.7178	0/1:11:7,4:7:252:4:125:-8.24729,0,-19.7176	0/0:88:88,0:88:3147:0:0:0,-26.4906,-283.455	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	0/1:49:25,24:25:900:24:852:-62.2499,0,-66.5705	0/0:76:75,1:75:2679:1:36:0,-19.28,-237.756	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:104:104,0:104:3714:0:0:0,-31.3071,-334.461	0/1:154:94,60:94:3364:60:2139:-146.416,0,-256.618	0/1:57:50,7:50:1791:7:252:-5.87025,0,-144.308	0/0:51:51,0:51:1801:0:0:0,-15.3525,-162.37	0/0:126:125,1:125:4442:1:36:0,-34.3315,-396.355	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.765	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:45:19,26:19:684:26:936:-71.0131,0,-48.344	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:80:46,33:46:1644:33:1171:-81.7011,0,-124.249	0/0:121:120,1:120:4295:1:36:0,-32.8264,-383.128	0/0:142:142,0:142:5057:0:0:0,-42.7463,-455.273	0/1:118:54,64:54:1935:64:2292:-171.02,0,-138.904	0/1:123:71,52:71:2539:52:1860:-130.653,0,-191.734	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/1:10:3,7:3:108:7:238:-18.7402,0,-7.06487	0/1:112:56,56:56:2008:56:2000:-146.558,0,-147.278	0/1:91:49,42:49:1752:42:1512:-108.981,0,-130.57	0/0:171:171,0:171:6132:0:0:0,-51.4761,-551.979	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:63:30,33:30:1076:33:1176:-87.1829,0,-78.188	0/1:154:91,63:91:3255:63:2232:-154.783,0,-246.812	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/0:67:67,0:67:2372:0:0:0,-20.169,-213.736	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:59:28,31:28:1000:31:1116:-82.9909,0,-72.5546	0/1:81:23,58:23:820:58:2063:-161.557,0,-49.7391	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.927	0/0:124:124,0:124:4443:0:0:0,-37.3277,-400.04
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chr04	31917774	.	A	G	55243.6	PASS	AB=0.479983;ABP=27.0042;AC=49;AF=0.260638;AN=188;AO=3351;CIGAR=1X;DP=14561;DPB=14561;DPRA=1.10248;EPP=7279.61;EPPR=24325.7;GTI=4;LEN=1;MEANALT=1.05085;MQM=59.7061;MQMR=59.952;NS=94;NUMALT=1;ODDS=0.721628;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119556;QR=400392;RO=11205;RPL=0;RPP=7279.61;RPPR=24325.7;RPR=3351;RUN=1;SAF=3351;SAP=7279.61;SAR=0;SRF=11205;SRP=24334.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:108:61,47:61:2192:47:1688:-119.688,0,-165.034	0/0:228:228,0:228:8184:0:0:0,-68.6348,-736.56	0/0:258:257,1:257:9168:1:36:0,-74.0675,-821.476	0/0:444:444,0:444:15872:0:0:0,-133.657,-1428.16	0/1:107:46,61:46:1637:61:2187:-164.876,0,-115.407	0/1:152:100,52:100:3592:52:1860:-121.894,0,-277.729	0/1:201:92,109:92:3300:109:3834:-284.727,0,-236.709	0/0:215:215,0:215:7712:0:0:0,-64.7214,-694.11	0/0:265:264,1:264:9481:1:36:0,-76.1747,-849.609	0/0:222:222,0:222:7926:0:0:0,-66.8287,-713.278	0/1:48:24,23:24:864:23:828:-60.3364,0,-63.5748	0/1:112:52,60:52:1864:60:2141:-159.203,0,-134.324	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/0:93:93,0:93:3333:0:0:0,-27.9958,-300.185	0/0:91:91,0:91:3237:0:0:0,-27.3937,-291.551	0/1:88:46,42:46:1656:42:1508:-109.524,0,-122.838	0/1:102:57,45:57:2040:45:1616:-114.973,0,-153.167	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:57:32,25:32:1148:25:885:-62.7915,0,-86.4711	0/1:267:136,131:136:4872:131:4692:-342.061,0,-358.201	0/1:320:197,123:197:7084:123:4393:-299.089,0,-541.272	0/1:267:99,166:99:3552:166:5941:-454.673,0,-239.773	0/0:193:193,0:193:6872:0:0:0,-58.0988,-618.546	0/0:256:252,4:252:8988:4:144:0,-63.7501,-795.583	0/1:207:125,82:125:4492:82:2925:-201.152,0,-342.129	0/0:432:432,0:432:15410:0:0:0,-130.045,-1386.12	0/1:382:206,176:206:7362:176:6215:-444.438,0,-547.631	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:341:341,0:341:12190:0:0:0,-102.651,-1096.92	0/1:181:107,74:107:3824:74:2630:-181.992,0,-289.742	0/1:142:82,60:82:2917:60:2130:-149.207,0,-220.016	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:5:0,5:0:0:5:180:-15.5112,-1.50515,0	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:346:210,136:210:7533:136:4877:-334.22,0,-573.849	0/1:205:89,116:89:3184:116:4156:-312.502,0,-225.073	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:253:249,4:249:8884:4:144:0,-62.8517,-786.226	0/1:32:10,22:10:360:22:792:-61.9727,0,-23.1113	0/1:246:118,127:118:4198:127:4549:-335.585,0,-304.037	0/1:126:45,81:45:1616:81:2901:-223.372,0,-107.8	0/1:82:34,48:34:1212:48:1728:-131.114,0,-84.7019	0/0:261:261,0:261:9299:0:0:0,-78.5688,-836.863	0/0:226:226,0:226:8063:0:0:0,-68.0328,-725.687	0/1:295:156,139:156:5570:139:4905:-352.787,0,-412.615	0/1:180:94,86:94:3346:86:3065:-221.832,0,-247.167	0/0:156:155,1:155:5508:1:36:0,-43.3624,-492.244	0/1:287:132,155:132:4699:155:5525:-410.944,0,-336.672	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:167:67,100:67:2340:100:3562:-270.489,0,-160.582	0/1:86:50,36:50:1758:36:1296:-91.0288,0,-132.611	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:221:221,0:221:7880:0:0:0,-66.5276,-709.075	0/0:162:161,1:161:5705:1:21:0,-46.6669,-511.459	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:29:20,9:20:716:9:324:-20.7751,0,-56.0378	0/1:142:98,44:98:3486:44:1584:-100.096,0,-271.203	0/0:121:120,1:120:4316:1:36:0,-32.8264,-385.016	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:108:107,1:107:3840:1:36:0,-28.913,-342.197	0/1:313:180,133:180:6430:133:4772:-335.402,0,-484.518	0/0:167:156,11:156:5578:11:392:0,-14.652,-466.52	0/0:119:119,0:119:4254:0:0:0,-35.8226,-383.036	0/0:379:378,0:378:13496:0:0:0,-113.789,-1214.21	0/0:103:101,2:101:3597:2:57:0,-25.5928,-318.523	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:165:165,0:165:5920:0:0:0,-49.6699,-532.907	0/1:119:63,56:63:2256:56:1997:-144.178,0,-167.452	0/1:31:19,12:19:684:12:428:-29.5269,0,-52.5584	0/1:187:95,92:95:3412:92:3289:-239.881,0,-250.993	0/0:104:104,0:104:3706:0:0:0,-31.3071,-333.74	0/0:318:318,0:318:11341:0:0:0,-95.7275,-1020.44	0/1:227:103,124:103:3628:124:4456:-332.864,0,-258.389	0/1:256:150,106:150:5272:106:3723:-258.146,0,-397.358	0/0:107:107,0:107:3802:0:0:0,-32.2102,-342.377	0/1:6:1,5:1:36:5:180:-14.7376,0,-1.79209	0/1:172:70,102:70:2496:102:3656:-277.453,0,-173.116	0/1:153:87,66:87:3116:66:2345:-165.233,0,-234.601	0/0:508:507,1:507:18162:1:21:0,-150.823,-1632.06	0/0:136:136,0:136:4872:0:0:0,-40.9401,-438.633	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:120:63,57:63:2260:57:2033:-147.11,0,-167.539	0/1:185:101,84:101:3601:84:3016:-215.97,0,-268.605	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/0:99:99,0:99:3552:0:0:0,-29.802,-318.951	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.846	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:60:36,24:36:1296:24:860:-59.6554,0,-98.8821	0/1:85:19,66:19:680:66:2364:-187.428,0,-35.9416	0/0:100:100,0:100:3566:0:0:0,-30.103,-321.145	0/0:203:202,1:202:7256:1:36:0,-57.5108,-648.712
chr04	31917853	.	A	G	946860	PASS	AB=0.625124;ABP=1372.4;AC=149;AF=0.792553;AN=188;AO=42934;CIGAR=1X;DP=46984;DPB=46984;DPRA=0;EPP=93233;EPPR=8764.9;GTI=7;LEN=1;MEANALT=1.14894;MQM=59.9821;MQMR=59.9864;NS=94;NUMALT=1;ODDS=2.98398;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1534565;QR=143891;RO=4035;RPL=42934;RPP=93233;RPPR=8764.9;RPR=0;RUN=1;SAF=0;SAP=93233;SAR=42934;SRF=0;SRP=8764.9;SRR=4035;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:93:39,54:39:1369:54:1936:-146.521,0,-95.5107	1/1:305:1,304:1:36:304:10854:-973.164,-88.2159,0	1/1:232:0,232:0:0:232:8300:-747.01,-69.839,0	1/1:605:1,604:1:36:604:21554:-1935.69,-178.525,0	0/1:178:74,104:74:2648:104:3704:-279.981,0,-184.983	0/1:210:26,184:26:909:184:6554:-526.726,0,-18.9071	0/1:328:127,201:127:4533:201:7188:-548.239,0,-309.399	1/1:449:0,448:0:0:448:16006:-1439.82,-134.861,0	1/1:185:0,185:0:0:185:6476:-582.938,-55.6906,0	1/1:342:1,341:1:36:341:12193:-1093.62,-99.354,0	0/1:385:59,326:59:2116:326:11639:-931.405,0,-74.8122	0/1:96:45,51:45:1601:51:1823:-135.452,0,-115.479	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	1/1:265:0,265:0:0:265:9444:-849.924,-79.773,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:82:52,30:52:1838:30:1076:-72.4684,0,-141.012	0/1:132:55,77:55:1929:77:2748:-207.827,0,-134.146	1/1:103:0,103:0:0:103:3692:-332.482,-31.0061,0	0/1:294:39,255:39:1400:255:9144:-734.428,0,-37.7964	0/1:455:246,209:246:8764:209:7468:-535.196,0,-651.779	0/1:440:114,326:114:4088:326:11613:-912.592,0,-235.652	0/1:157:93,64:93:3340:64:2288:-158.92,0,-253.555	1/1:102:3,99:3:108:99:3533:-308.103,-20.6299,0	1/1:343:6,337:6:212:337:12072:-1066.9,-83.8285,0	0/1:124:51,73:51:1832:73:2616:-198.36,0,-127.833	1/1:1036:0,1035:0:0:1035:36973:-3326.02,-311.566,0	0/1:567:244,323:244:8699:323:11557:-869.317,0,-612.217	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:639:0,639:0:0:639:22776:-2049.25,-192.358,0	0/1:226:105,121:105:3768:121:4328:-321.663,0,-271.286	0/1:392:120,272:120:4258:272:9713:-756.112,0,-265.395	1/1:1475:12,1463:12:428:1463:52406:-4675.8,-405.16,0	1/1:1342:46,1296:46:1633:1296:46411:-4027.04,-256.725,0	1/1:1596:17,1578:17:612:1578:56486:-5025.49,-424.948,0	1/1:2357:20,2337:20:689:2337:83445:-7444.55,-647.199,0	1/1:3092:2,3089:2:72:3089:110356:-9920.92,-923.907,0	0/1:279:133,146:133:4748:146:5218:-385.772,0,-343.492	0/1:310:158,152:158:5637:152:5436:-396.051,0,-414.132	1/1:731:0,731:0:0:731:26126:-2350.57,-220.053,0	1/1:2078:2,2076:2:72:2076:74227:-6670.79,-618.704,0	1/1:321:3,318:3:104:318:11365:-1013.03,-86.9278,0	0/1:181:32,149:32:1144:149:5344:-426.605,0,-48.7831	0/1:402:139,262:139:4942:262:9360:-721.294,0,-323.857	0/1:96:31,65:31:1116:65:2324:-180.521,0,-71.8528	0/1:69:34,35:34:1224:35:1256:-92.5742,0,-89.696	1/1:646:0,645:0:0:645:22965:-2065.89,-194.164,0	1/1:256:0,256:0:0:256:9172:-825.451,-77.0637,0	0/1:386:188,197:188:6699:197:7040:-517.407,0,-486.733	0/1:203:73,130:73:2578:130:4652:-357.733,0,-171.158	1/1:442:0,442:0:0:442:15815:-1423.04,-133.055,0	0/1:359:110,249:110:3941:249:8917:-694.441,0,-246.81	1/1:1689:22,1666:22:788:1666:59609:-5291.27,-437.254,0	0/1:231:99,132:99:3548:132:4719:-355.332,0,-249.99	0/1:135:44,91:44:1572:91:3256:-252.622,0,-101.133	1/1:1232:46,1185:46:1644:1185:42402:-3666.07,-222.532,0	1/1:289:0,289:0:0:289:10330:-929.622,-86.9977,0	1/1:108:0,108:0:0:108:3868:-348.086,-32.5112,0	1/1:2578:0,2577:0:0:2577:92143:-8288.98,-775.754,0	1/1:1516:26,1489:26:928:1489:53226:-4704.54,-372.582,0	0/1:274:102,172:102:3637:172:6154:-471.477,0,-245.052	1/1:150:1,149:1:36:149:5332:-476.416,-41.5562,0	1/1:1878:1,1877:1:36:1877:67085:-6031.48,-561.736,0	1/1:144:0,143:0:0:143:5108:-459.505,-43.0473,0	0/1:432:171,261:171:6109:261:9364:-712.676,0,-419.866	1/1:195:8,187:8:284:187:6704:-577.531,-32.7975,0	1/1:211:0,211:0:0:211:7560:-680.439,-63.5173,0	1/1:830:5,825:5:180:825:29365:-2625.1,-233.303,0	1/1:374:0,374:0:0:374:13334:-1199.86,-112.585,0	1/1:598:0,598:0:0:598:21388:-1924.38,-180.016,0	1/1:99:0,98:0:0:98:3500:-314.851,-29.5009,0	0/1:148:59,89:59:2124:89:3171:-241.062,0,-146.876	1/1:781:15,766:15:540:766:27376:-2414.11,-186.168,0	0/1:89:49,40:49:1760:40:1415:-100.855,0,-131.892	1/1:164:0,164:0:0:164:5861:-527.601,-49.3689,0	1/1:761:1,758:1:36:758:27004:-2426,-225.243,0	0/1:362:191,171:191:6821:171:6136:-443.365,0,-504.67	0/1:268:144,124:144:5118:124:4435:-318.645,0,-380.087	1/1:259:3,256:3:108:256:9159:-814.151,-67.8916,0	1/1:1596:18,1578:18:648:1578:56448:-5019.65,-421.792,0	0/1:244:113,131:113:4037:131:4696:-349.348,0,-290.066	0/1:282:131,151:131:4598:151:5389:-400.251,0,-329.006	1/1:500:1,499:1:36:499:17810:-1598.91,-146.917,0	1/1:153:0,153:0:0:153:5446:-490.271,-46.0576,0	1/1:93:0,93:0:0:93:3323:-299.288,-27.9958,0	0/1:130:47,83:47:1676:83:2928:-224.621,0,-111.993	0/1:255:97,158:97:3455:158:5649:-431.767,0,-234.401	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	1/1:134:0,134:0:0:134:4791:-431.347,-40.338,0	1/1:89:0,89:0:0:89:3175:-285.972,-26.7917,0	1/1:961:1,960:1:36:960:34424:-3093.4,-285.692,0	0/1:667:80,587:80:2861:587:21018:-1690.3,0,-56.9387	0/1:109:59,50:59:2116:50:17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chr04	31921995	.	G	T	22929.6	PASS	AB=0.457906;ABP=52.5521;AC=46;AF=0.247312;AN=186;AO=1485;CIGAR=1X;DP=6721;DPB=6721;DPRA=0.972369;EPP=3227.65;EPPR=11370.7;GTI=1;LEN=1;MEANALT=1;MQM=59.9401;MQMR=59.999;NS=93;NUMALT=1;ODDS=1.08024;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52062;QR=184660;RO=5235;RPL=0;RPP=3227.65;RPPR=11370.7;RPR=1485;RUN=1;SAF=0;SAP=3227.65;SAR=1485;SRF=0;SRP=11370.7;SRR=5235;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:26,34:26:892:34:1163:-86.9103,0,-62.5283	0/0:39:39,0:39:1364:0:0:0,-11.7402,-123.058	0/0:90:90,0:90:3159:0:0:0,-27.0927,-284.534	0/0:132:132,0:132:4677:0:0:0,-39.736,-421.095	0/1:37:21,16:21:733:16:560:-39.5906,0,-55.1516	0/1:20:9,11:9:315:11:380:-28.5114,0,-22.6666	0/1:77:42,35:42:1500:35:1217:-86.6529,0,-112.115	0/0:77:77,0:77:2740:0:0:0,-23.1793,-246.841	0/0:76:76,0:76:2675:0:0:0,-22.8783,-240.995	0/0:55:55,0:55:1954:0:0:0,-16.5566,-176.134	0/1:80:42,38:42:1495:38:1346:-97.3562,0,-110.761	0/1:75:43,32:43:1483:32:1121:-78.6182,0,-111.182	0/0:82:82,0:82:2904:0:0:0,-24.6845,-261.595	0/0:93:93,0:93:3248:0:0:0,-27.9958,-292.545	0/0:72:72,0:72:2528:0:0:0,-21.6742,-227.771	0/1:49:25,24:25:888:24:844:-61.5285,0,-65.4886	0/1:29:18,11:18:627:11:396:-27.2529,0,-48.0245	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:31:13,18:13:464:18:648:-49.32,0,-32.7656	0/1:71:33,38:33:1160:38:1332:-98.8067,0,-83.3308	0/1:111:61,50:61:2130:50:1724:-122.025,0,-158.551	0/1:72:21,51:21:739:51:1762:-137.157,0,-45.1582	0/0:115:115,0:115:4075:0:0:0,-34.6184,-366.937	0/0:51:47,4:47:1670:4:135:0,-2.87002,-138.103	0/1:73:31,42:31:1084:42:1460:-109.716,0,-75.8909	0/0:173:173,0:173:6117:0:0:0,-52.0782,-550.636	0/1:169:86,83:86:3046:83:2913:-211.533,0,-223.497	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:188:188,0:188:6661:0:0:0,-56.5936,-599.573	0/1:85:46,39:46:1601:39:1372:-98.191,0,-118.787	0/1:95:57,38:57:2019:38:1332:-91.5803,0,-153.385	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:14:10,4:10:356:4:140:-8.73016,0,-28.1668	0/1:6:4,2:4:135:2:72:-5.03054,0,-10.6763	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/1:178:100,78:100:3511:78:2746:-193.8,0,-262.62	0/1:124:72,52:72:2522:52:1856:-129.992,0,-189.902	0/0:54:54,0:54:1901:0:0:0,-16.2556,-171.366	.:.:.:.:.:.:.:.	0/0:88:86,2:86:3057:2:72:0,-19.6539,-268.522	0/1:35:20,15:20:716:15:519:-36.5007,0,-54.2317	0/1:88:36,52:36:1272:52:1827:-138.22,0,-88.2922	0/1:38:22,16:22:752:16:568:-40.0127,0,-56.555	0/1:44:27,17:27:951:17:591:-40.2699,0,-72.659	0/0:99:99,0:99:3500:0:0:0,-29.802,-315.209	0/0:99:98,1:98:3431:1:36:0,-26.2037,-305.406	0/1:107:65,42:65:2309:42:1472:-100.106,0,-175.859	0/1:80:27,53:27:946:53:1867:-144.226,0,-61.3705	0/0:106:106,0:106:3749:0:0:0,-31.9092,-337.612	0/1:106:52,54:52:1833:54:1903:-139.638,0,-133.339	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/1:120:86,34:86:2998:34:1191:-71.3684,0,-233.93	0/1:30:17,13:17:595:13:459:-32.6132,0,-44.8458	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/0:125:124,1:124:4313:1:36:0,-34.0305,-384.752	0/0:50:50,0:50:1757:0:0:0,-15.0515,-158.411	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:7,4:7:248:4:140:-9.63325,0,-19.3529	0/1:82:49,33:49:1744:33:1168:-80.7428,0,-132.56	0/0:104:104,0:104:3704:0:0:0,-31.3071,-333.564	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:118:117,0:117:4143:0:0:0,-35.2205,-372.695	0/1:126:49,77:49:1717:77:2712:-206.394,0,-116.883	0/0:38:37,1:37:1324:1:36:0,-7.84086,-115.864	0/0:44:43,1:43:1508:1:22:0,-11.0454,-133.81	0/0:120:119,1:119:4205:1:36:0,-32.5253,-375.033	0/0:128:128,0:128:4504:0:0:0,-38.5318,-405.532	0/0:50:50,0:50:1760:0:0:0,-15.0515,-158.681	0/0:50:50,0:50:1770:0:0:0,-15.0515,-159.582	0/1:50:21,29:21:752:29:1032:-78.142,0,-52.9548	0/1:25:13,12:13:464:12:420:-30.6083,0,-34.5718	0/1:145:90,55:90:3166:55:1923:-129.697,0,-241.516	0/0:61:61,0:61:2154:0:0:0,-18.3628,-194.127	0/0:141:141,0:141:4977:0:0:0,-42.4452,-448.085	0/1:109:78,31:78:2744:31:1077:-64.424,0,-214.388	0/1:79:42,37:42:1508:37:1283:-91.9864,0,-112.233	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:58:45,13:45:1589:13:428:-21.3758,0,-125.839	0/1:61:46,15:46:1591:15:520:-28.7651,0,-125.113	0/0:130:130,0:130:4573:0:0:0,-39.1339,-411.737	0/0:48:48,0:48:1699:0:0:0,-14.4494,-153.195	0/0:73:73,0:73:2581:0:0:0,-21.9752,-232.539	0/1:41:18,23:18:640:23:795:-59.5245,0,-45.5871	0/1:105:60,45:60:2111:45:1582:-111.061,0,-158.648	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:55:55,0:55:1928:0:0:0,-16.5566,-173.794	0/0:73:73,0:73:2591:0:0:0,-21.9752,-233.436	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/1:156:87,69:87:3041:69:2436:-172.535,0,-226.96	0/1:48:16,32:16:568:32:1148:-89.1804,0,-37.0024	0/0:80:80,0:80:2796:0:0:0,-24.0824,-251.882	0/0:89:89,0:89:3158:0:0:0,-26.7917,-284.446
chr04	31922032	.	T	A	24435	PASS	AB=0.457169;ABP=55.466;AC=46;AF=0.247312;AN=186;AO=1515;CIGAR=1X;DP=6895;DPB=6895;DPRA=0.959029;EPP=3275.44;EPPR=11516.7;GTI=1;LEN=1;MEANALT=1.03846;MQM=59.9122;MQMR=59.9913;NS=93;NUMALT=1;ODDS=0.066598;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54169;QR=192599;RO=5378;RPL=1513;RPP=3275.44;RPPR=11508.1;RPR=2;RUN=1;SAF=0;SAP=3292.79;SAR=1515;SRF=1;SRP=11672.5;SRR=5377;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:28,33:28:1008:33:1176:-87.7844,0,-72.6735	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:92:92,0:92:3293:0:0:0,-27.6948,-296.587	0/0:137:137,0:137:4901:0:0:0,-41.2411,-441.24	0/1:38:20,18:20:705:18:648:-47.2127,0,-52.3336	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:80:43,37:43:1548:37:1309:-94.027,0,-115.531	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/0:76:76,0:76:2705:0:0:0,-22.8783,-243.693	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:82:44,38:44:1576:38:1355:-97.5659,0,-117.447	0/1:74:43,31:43:1536:31:1112:-78.1151,0,-116.171	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:97:97,0:97:3492:0:0:0,-29.1999,-314.489	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/1:48:25,23:25:900:23:828:-60.3947,0,-66.8716	0/1:29:19,10:19:669:10:360:-24.0144,0,-51.8041	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:32:13,19:13:464:19:684:-52.2574,0,-32.4645	0/1:72:33,39:33:1188:39:1352:-100.294,0,-85.5544	0/1:110:61,49:61:2192:49:1756:-125.211,0,-164.432	0/1:75:23,52:23:813:52:1845:-143.731,0,-50.9119	0/0:119:119,0:119:4242:0:0:0,-35.8226,-381.957	0/0:54:50,4:50:1800:4:144:0,-2.942,-148.969	0/1:75:31,44:31:1112:44:1572:-118.967,0,-77.8141	0/0:174:174,0:174:6229:0:0:0,-52.3792,-560.704	0/1:173:89,84:89:3177:84:3024:-220.311,0,-234.075	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:197:197,0:197:7054:0:0:0,-59.3029,-634.787	0/1:91:48,43:48:1728:43:1544:-111.859,0,-128.412	0/1:95:58,37:58:2072:37:1287:-87.5267,0,-158.153	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:14:10,4:10:345:4:144:-9.0992,0,-27.1664	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:178:101,77:101:3628:77:2764:-195.418,0,-273.141	0/1:126:75,51:75:2681:51:1832:-127.231,0,-203.604	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	.:.:.:.:.:.:.:.	0/0:92:90,2:90:3240:2:72:0,-20.858,-284.983	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	0/1:91:40,51:40:1428:51:1836:-138.127,0,-101.424	0/1:38:22,16:22:788:16:576:-40.7358,0,-59.8057	0/1:45:28,17:28:1008:17:612:-41.8671,0,-77.49	0/0:98:98,0:98:3501:0:0:0,-29.5009,-315.297	0/0:103:103,0:103:3693:0:0:0,-31.0061,-332.57	0/1:110:66,44:66:2353:44:1530:-104.75,0,-178.914	0/1:81:27,54:27:972:54:1929:-149.501,0,-63.4145	0/0:107:107,0:107:3852:0:0:0,-32.2102,-346.874	0/1:110:53,57:53:1893:57:2052:-151.838,0,-137.533	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:117:85,32:85:3030:32:1152:-68.7673,0,-237.707	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3825	0/1:7:5,2:5:180:2:72:-4.72092,0,-14.4449	0/0:135:133,1:133:4746:1:36:0,-37.0796,-423.717	0/0:51:51,0:51:1821:0:0:0,-15.3525,-164.169	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:10:6,4:6:201:4:144:-10.3033,0,-15.4067	0/1:83:50,33:50:1792:33:1180:-81.5226,0,-136.577	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:118:118,0:118:4217:0:0:0,-35.5215,-379.709	0/1:136:53,83:53:1904:83:2979:-227.401,0,-130.697	0/0:37:36,1:36:1281:1:36:0,-7.53983,-111.993	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:121:120,1:120:4282:1:36:0,-32.8264,-381.957	0/0:127:127,0:127:4515:0:0:0,-38.2308,-406.515	0/0:53:52,1:52:1857:1:36:0,-12.3563,-163.809	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/1:49:21,28:21:752:28:993:-74.932,0,-53.2558	0/1:25:13,12:13:464:12:432:-31.6954,0,-34.5718	0/1:151:93,58:93:3336:58:2080:-142.015,0,-255.001	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.194	0/0:147:147,0:147:5280:0:0:0,-44.2514,-475.334	0/1:115:79,36:79:2844:36:1292:-81.9653,0,-221.579	0/1:84:45,39:45:1605:39:1389:-100.02,0,-119.452	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:59:45,14:45:1605:14:504:-27.9373,0,-126.977	0/1:66:49,17:49:1756:17:608:-35.184,0,-138.456	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.234	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.043	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:42:19,22:19:684:22:792:-58.9036,0,-49.1883	0/1:104:59,45:59:2120:45:1620:-114.783,0,-159.761	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:161:89,72:89:3196:72:2569:-182.992,0,-239.397	0/1:48:18,30:18:644:30:1076:-82.7034,0,-43.8412	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605	0/0:92:92,0:92:3289:0:0:0,-27.6948,-296.228
chr04	31922037	.	G	T	24928.5	PASS	AB=0.463244;ABP=41.6403;AC=46;AF=0.247312;AN=186;AO=1540;CIGAR=1X;DP=6842;DPB=6842;DPRA=1.16297;EPP=3347.08;EPPR=11440.3;GTI=0;LEN=1;MEANALT=1.01754;MQM=59.8974;MQMR=59.9957;NS=93;NUMALT=1;ODDS=0.694543;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55191;QR=188604;RO=5299;RPL=1540;RPP=3347.08;RPPR=11431.6;RPR=0;RUN=1;SAF=0;SAP=3347.08;SAR=1540;SRF=1;SRP=11501;SRR=5298;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:27,35:27:944:35:1252:-94.3207,0,-66.6102	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:90:89,1:89:3170:1:36:0,-23.4944,-281.926	0/0:135:134,1:134:4783:1:36:0,-37.0408,-427.029	0/1:39:21,18:21:747:18:648:-46.9117,0,-55.8141	0/1:22:9,13:9:316:13:468:-35.837,0,-22.1562	0/1:78:42,36:42:1500:36:1292:-93.1034,0,-111.814	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/0:75:75,0:75:2646:0:0:0,-22.5772,-238.387	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/1:80:43,37:43:1540:37:1309:-94.0268,0,-114.811	0/1:73:42,31:42:1483:31:1116:-78.7765,0,-111.702	0/0:83:83,0:83:2947:0:0:0,-24.9855,-265.465	0/0:94:94,0:94:3348:0:0:0,-28.2968,-301.538	0/0:76:76,0:76:2706:0:0:0,-22.8783,-243.783	0/1:48:25,23:25:883:23:828:-60.3947,0,-65.338	0/1:30:19,11:19:684:11:396:-26.9518,0,-52.8594	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/1:32:12,20:12:423:20:720:-55.4958,0,-28.7721	0/1:70:34,36:34:1212:36:1292:-95.4667,0,-88.3142	0/1:113:61,52:61:2192:52:1864:-134.023,0,-163.529	0/1:75:22,53:22:780:53:1870:-145.979,0,-47.9458	0/0:117:117,0:117:4156:0:0:0,-35.2205,-374.223	0/0:50:46,4:46:1631:4:144:0,-1.73788,-133.764	0/1:75:31,44:31:1091:44:1580:-119.687,0,-75.9215	0/0:173:173,0:173:6156:0:0:0,-52.0782,-554.141	0/1:175:90,85:90:3194:85:3056:-222.588,0,-235.004	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:193:192,1:192:6826:1:25:0,-55.6123,-611.929	0/1:88:47,41:47:1668:41:1463:-105.475,0,-123.917	0/1:95:57,38:57:2036:38:1360:-94.1009,0,-154.914	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:14:10,4:10:351:4:144:-9.0992,0,-27.7123	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/1:179:100,79:100:3539:79:2840:-201.953,0,-264.838	0/1:127:75,52:75:2676:52:1872:-130.528,0,-202.855	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	.:.:.:.:.:.:.:.	0/0:90:88,2:88:3135:2:72:0,-20.256,-275.54	0/1:35:20,15:20:720:15:536:-38.0388,0,-54.5927	0/1:92:40,52:40:1424:52:1864:-140.345,0,-100.763	0/1:38:22,16:22:783:16:576:-40.7358,0,-59.3538	0/1:45:28,17:28:999:17:612:-41.8671,0,-76.6782	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.092	0/0:101:101,0:101:3594:0:0:0,-30.404,-323.667	0/1:111:67,44:67:2392:44:1558:-106.921,0,-182.123	0/1:81:26,55:26:920:55:1980:-154.091,0,-58.7336	0/0:107:106,0:106:3767:0:0:0,-31.9092,-338.872	0/1:110:52,58:52:1856:58:2088:-155.076,0,-134.206	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:118:84,34:84:2978:34:1224:-74.9432,0,-232.732	0/1:30:17,13:17:608:13:468:-33.4287,0,-46.0211	0/1:7:5,2:5:176:2:72:-4.72092,0,-14.0778	0/0:132:131,1:131:4647:1:36:0,-36.1377,-414.798	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:83:49,33:49:1748:33:1173:-80.8314,0,-132.56	0/0:107:107,0:107:3810:0:0:0,-32.2102,-343.098	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:117:116,1:116:4140:1:36:0,-31.6222,-369.187	0/1:135:51,84:51:1819:84:3016:-231.029,0,-123.351	0/0:37:36,1:36:1288:1:36:0,-7.53983,-112.625	0/0:45:45,0:45:1595:0:0:0,-13.5463,-143.84	0/0:119:118,1:118:4198:1:36:0,-32.2243,-374.404	0/0:127:127,0:127:4519:0:0:0,-38.2308,-406.88	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:50:21,29:21:744:29:1036:-78.5024,0,-52.2328	0/1:23:13,10:13:459:10:360:-25.8206,0,-34.7204	0/1:148:90,58:90:3219:58:2073:-142.286,0,-245.379	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:148:148,0:148:5271:0:0:0,-44.5524,-474.529	0/1:114:78,36:78:2780:36:1296:-82.6265,0,-216.124	0/1:85:44,41:44:1572:41:1460:-106.108,0,-116.184	0/0:54:54,0:54:1920:0:0:0,-16.2556,-173.077	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:61:46,15:46:1640:15:540:-30.5737,0,-129.526	0/1:65:48,17:48:1686:17:612:-35.8465,0,-132.458	0/0:131:130,1:130:4619:1:36:0,-35.8367,-412.279	0/0:48:47,1:47:1675:1:24:0,-12.0496,-148.637	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:42:19,23:19:680:23:828:-62.2009,0,-48.8859	0/1:106:59,47:59:2098:47:1688:-120.298,0,-157.179	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:55:55,0:55:1951:0:0:0,-16.5566,-175.865	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.285	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.359	0/1:159:87,72:87:3069:72:2588:-185.305,0,-228.576	0/1:50:18,32:18:627:32:1152:-88.9386,0,-41.7029	0/0:81:80,0:80:2838:0:0:0,-24.0824,-255.299	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663
chr04	31950565	.	G	A	36768.4	PASS	AB=0.623434;ABP=425.43;AC=47;AF=0.252688;AN=186;AO=2008;CIGAR=1X;DP=6034;DPB=6034;DPRA=1.27272;EPP=4039.51;EPPR=7978.94;GTI=5;LEN=1;MEANALT=1.01786;MQM=59.8899;MQMR=59.4412;NS=93;NUMALT=1;ODDS=0.63765;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71275;QR=143742;RO=4025;RPL=1970;RPP=4039.51;RPPR=7978.94;RPR=38;RUN=1;SAF=0;SAP=4363.33;SAR=2008;SRF=0;SRP=8743.19;SRR=4025;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:7,20:7:252:20:707:-55.8268,0,-14.8425	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.418	0/0:66:66,0:66:2343:0:0:0,-19.868,-211.099	0/0:112:111,1:111:3967:1:36:0,-30.1171,-353.602	0/1:43:6,37:6:216:37:1308:-105.077,0,-6.84622	0/1:91:14,77:14:504:77:2732:-218.693,0,-18.3044	0/1:67:32,35:32:1139:35:1248:-92.4559,0,-82.2785	0/0:86:86,0:86:3070:0:0:0,-25.8886,-276.462	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.239	0/0:94:93,1:93:3324:1:36:0,-24.6985,-295.765	0/1:26:12,14:12:424:14:492:-36.6527,0,-30.6696	0/1:47:21,26:21:756:26:904:-67.5251,0,-53.9481	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.654	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.582	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.649	0/1:49:24,25:24:864:25:846:-61.6957,0,-63.3321	0/1:70:33,37:33:1180:37:1320:-98.0298,0,-85.435	0/0:47:47,0:47:1655:0:0:0,-14.1484,-149.233	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:106:33,73:33:1184:73:2616:-203.778,0,-74.9439	0/1:91:42,49:42:1512:49:1747:-130.119,0,-108.959	0/1:241:26,215:26:936:215:7614:-612.756,0,-11.5174	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.181	0/0:81:74,7:74:2644:7:248:0,-1.71923,-215.153	0/1:45:15,30:15:536:30:1072:-83.2461,0,-35.0203	0/0:172:171,1:171:6073:1:36:0,-48.1789,-542.995	0/1:126:54,72:54:1936:72:2544:-191.28,0,-135.032	0/0:38:37,1:37:1328:1:36:0,-7.84086,-116.123	0/0:124:124,0:124:4418:0:0:0,-37.3277,-397.786	0/1:106:46,60:46:1628:60:2134:-160.134,0,-114.895	0/1:87:47,40:47:1680:40:1424:-102.268,0,-125.251	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:6:5,1:5:180:1:32:-1.39313,0,-14.7459	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:7:6,1:6:216:1:32:-1.0921,0,-17.6833	.:.:.:.:.:.:.:.	0/1:158:84,74:84:2986:74:2640:-190.283,0,-221.386	0/1:107:38,69:38:1364:69:2452:-188.653,0,-90.7901	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82552	0/0:65:62,3:62:2220:3:108:0,-9.49178,-189.965	0/1:27:9,18:9:320:18:648:-50.5217,0,-21.0145	0/1:122:33,89:33:1184:89:3155:-247.442,0,-70.1208	0/1:68:41,27:41:1472:27:960:-66.2462,0,-112.3	0/1:62:32,30:32:1148:30:1076:-78.4867,0,-84.966	0/0:55:53,2:53:1895:2:68:0,-10.0989,-164.21	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.5002	0/1:85:31,54:31:1088:54:1911:-146.679,0,-72.6343	0/1:76:36,40:36:1277:40:1428:-105.939,0,-91.3314	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.539	0/1:94:47,47:47:1667:47:1673:-122.558,0,-121.863	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:62:10,52:10:360:52:1851:-148.205,0,-14.0804	0/1:22:8,14:8:284:14:504:-39.0754,0,-19.2807	0/1:12:10,2:10:351:2:63:-2.3708,0,-28.3143	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.592	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9781	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:18:4,14:4:140:14:492:-39.1938,0,-7.52604	0/1:66:20,46:20:720:46:1652:-129.097,0,-45.2444	0/0:80:79,1:79:2828:1:27:0,-21.3826,-251.532	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:159:159,0:159:5673:0:0:0,-47.8638,-510.387	0/1:104:48,56:48:1712:56:1978:-146.984,0,-123.059	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.204	0/0:42:42,0:42:1483:0:0:0,-12.6433,-133.758	0/0:94:94,0:94:3339:0:0:0,-28.2968,-300.696	0/0:83:82,1:82:2925:1:36:0,-21.3872,-258.775	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.05	0/1:67:26,41:26:913:41:1463:-111.796,0,-62.308	0/1:15:9,6:9:315:6:216:-15.2751,0,-24.1665	0/1:54:18,35:18:644:35:1252:-96.8164,0,-42.0934	0/0:63:63,0:63:2248:0:0:0,-18.9649,-201.969	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.898	0/1:116:51,65:51:1824:65:2296:-171.983,0,-129.511	0/1:131:26,105:26:932:105:3743:-297.367,0,-44.6047	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.665	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:80:21,59:21:748:59:2081:-163.477,0,-43.5501	0/1:84:28,56:28:992:56:2007:-155.617,0,-64.2547	0/0:113:113,0:113:4028:0:0:0,-34.0164,-362.617	0/0:88:88,0:88:3155:0:0:0,-26.4906,-284.16	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.367	0/1:82:44,38:44:1580:38:1330:-95.3113,0,-117.805	0/1:109:52,57:52:1864:57:2010:-148.36,0,-135.216	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.3053	0/0:80:80,0:80:2838:0:0:0,-24.0824,-255.297	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.753	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8775	0/1:58:24,34:24:860:34:1195:-90.3866,0,-60.2575	0/1:47:13,34:13:464:34:1220:-95.936,0,-27.9305	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.476	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.018
chr04	31951111	.	C	T	23151.4	PASS	AB=0.47549;ABP=17.9126;AC=50;AF=0.268817;AN=186;AO=1382;CIGAR=1X;DP=5971;DPB=5971;DPRA=0.935159;EPP=2866.62;EPPR=9146.81;GTI=1;LEN=1;MEANALT=1.05882;MQM=59.9624;MQMR=59.9843;NS=93;NUMALT=1;ODDS=0.342334;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49309;QR=161976;RO=4583;RPL=16;RPP=2866.62;RPPR=9146.81;RPR=1366;RUN=1;SAF=1382;SAP=3003.99;SAR=0;SRF=4583;SRP=9954.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	0/0:57:57,0:57:2007:0:0:0,-17.1587,-180.903	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/0:121:121,0:121:4251:0:0:0,-36.4246,-382.738	0/1:28:22,6:22:780:6:208:-10.6302,0,-62.0942	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/1:126:73,53:73:2582:53:1884:-131.282,0,-194.7	0/0:93:93,0:93:3287:0:0:0,-27.9958,-296.052	0/0:68:68,0:68:2387:0:0:0,-20.47,-215.089	0/0:72:72,0:72:2522:0:0:0,-21.6742,-227.233	0/1:50:23,27:23:811:27:972:-72.7464,0,-58.2585	0/1:80:42,38:42:1504:38:1356:-98.2581,0,-111.564	0/0:74:74,0:74:2606:0:0:0,-22.2762,-234.786	0/0:56:56,0:56:1955:0:0:0,-16.8577,-176.22	0/0:71:71,0:71:2514:0:0:0,-21.3731,-226.512	0/1:54:24,30:24:832:30:1080:-81.2576,0,-58.9384	0/1:39:27,12:27:963:12:432:-27.481,0,-75.2458	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:46:31,15:31:1108:15:540:-35.0892,0,-86.1836	0/1:101:66,34:66:2356:34:1215:-79.193,0,-181.836	0/1:51:30,21:30:1026:21:752:-52.6537,0,-77.2939	0/1:44:17,27:17:608:27:955:-73.0195,0,-41.8067	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:17:16,1:16:572:1:36:0,-1.51923,-48.2152	0/1:33:17,16:17:592:16:567:-41.4267,0,-43.6724	0/0:198:198,0:198:6975:0:0:0,-59.6039,-627.826	0/1:201:104,97:104:3643:97:3468:-251.825,0,-267.572	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:213:211,2:211:7447:2:72:0,-57.2827,-663.45	0/1:82:48,34:48:1692:34:1208:-84.3416,0,-127.882	0/1:86:50,36:50:1735:36:1284:-89.9748,0,-130.539	0/1:13:3,10:3:104:10:356:-28.4679,0,-5.78942	0/1:9:3,6:3:104:6:212:-16.7155,0,-6.99354	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:19:5,14:5:171:14:504:-39.9785,0,-10.0059	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:158:85,72:85:3006:72:2566:-183.566,0,-223.151	0/1:97:69,27:69:2464:27:964:-57.9241,0,-192.864	0/0:68:68,0:68:2412:0:0:0,-20.47,-217.337	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:69:69,0:69:2455:0:0:0,-20.7711,-221.205	0/1:28:13,15:13:455:15:536:-40.146,0,-32.8531	0/1:51:23,28:23:807:28:995:-74.5115,0,-57.5966	0/1:54:30,24:30:1055:24:855:-61.0145,0,-79.0044	0/1:52:25,27:25:888:27:964:-71.4233,0,-64.5855	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:81:80,0:80:2827:0:0:0,-24.0824,-254.311	0/1:107:57,50:57:2015:50:1788:-128.984,0,-149.413	0/1:95:53,42:53:1859:42:1508:-107.417,0,-138.991	0/0:56:56,0:56:1980:0:0:0,-16.8577,-178.475	0/1:100:60,40:60:2147:40:1440:-99.7947,0,-163.394	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:59:32,27:32:1136:27:955:-68.5041,0,-84.7881	0/1:26:6,20:6:212:20:716:-56.9409,0,-11.598	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:75:75,0:75:2641:0:0:0,-22.5772,-237.937	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	.:.:.:.:.:.:.:.	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:70:23,47:23:815:47:1684:-130.775,0,-52.5987	0/0:99:98,0:98:3457:0:0:0,-29.5009,-310.985	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:160:160,0:160:5669:0:0:0,-48.1648,-510.335	0/1:112:67,45:67:2367:45:1584:-109.133,0,-179.574	0/0:57:56,1:56:1996:1:36:0,-13.5604,-176.316	0/0:44:44,0:44:1552:0:0:0,-13.2453,-139.972	0/0:83:83,0:83:2919:0:0:0,-24.9855,-262.948	0/0:57:57,0:57:2016:0:0:0,-17.1587,-181.713	0/0:17:17,0:17:584:0:0:0,-5.11751,-52.8808	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:50:35,15:35:1239:15:536:-33.5233,0,-96.7622	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:122:46,76:46:1615:76:2688:-205.437,0,-108.723	0/0:105:105,0:105:3743:0:0:0,-31.6081,-337.071	0/0:87:87,0:87:3087:0:0:0,-26.1896,-278.059	0/1:125:54,71:54:1920:71:2543:-191.491,0,-135.437	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/0:46:46,0:46:1630:0:0:0,-13.8474,-146.987	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:67:39,28:39:1379:28:986:-68.8832,0,-104.239	0/1:53:20,33:20:712:33:1184:-90.9137,0,-48.4521	0/0:135:135,0:135:4735:0:0:0,-40.639,-426.316	0/0:92:92,0:92:3261:0:0:0,-27.6948,-293.711	0/0:42:41,0:41:1456:0:0:0,-12.3422,-130.976	0/1:55:36,19:36:1233:19:662:-43.3458,0,-94.7095	0/1:119:73,46:73:2587:46:1648:-112.786,0,-197.257	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:70:70,0:70:2475:0:0:0,-21.0721,-223.004	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.534	0/0:29:29,0:29:1022:0:0:0,-8.72987,-92.2909	0/1:91:31,60:31:1077:60:2134:-164.933,0,-69.8423	0/1:54:13,41:13:464:41:1476:-116.881,0,-25.8419	0/0:99:99,0:99:3475:0:0:0,-29.802,-312.964	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.898
chr04	31951123	.	C	T	22886.4	PASS	AB=0.497592;ABP=3.14627;AC=52;AF=0.27957;AN=186;AO=1378;CIGAR=1X;DP=5560;DPB=5560;DPRA=0.964343;EPP=2995.3;EPPR=9064.56;GTI=2;LEN=1;MEANALT=1.07547;MQM=59.9623;MQMR=59.9964;NS=93;NUMALT=1;ODDS=1.61073;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49243;QR=142891;RO=4173;RPL=1378;RPP=2995.3;RPPR=9064.56;RPR=0;RUN=1;SAF=1378;SAP=2995.3;SAR=0;SRF=4173;SRP=9064.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0	0/0:50:49,1:49:1706:1:36:0,-11.4532,-150.223	0/0:60:60,0:60:2118:0:0:0,-18.0618,-190.888	0/0:105:105,0:105:3623:0:0:0,-31.6081,-326.244	0/1:25:19,6:19:667:6:216:-12.2648,0,-52.8289	0/1:11:10,1:10:344:1:36:-0.286945,0,-27.9807	0/1:120:67,53:67:2279:53:1888:-134.027,0,-169.247	0/0:78:77,0:77:2672:0:0:0,-23.1793,-240.474	0/0:62:62,0:62:2091:0:0:0,-18.6639,-188.458	0/0:70:70,0:70:2414:0:0:0,-21.0721,-217.516	0/1:48:21,27:21:701:27:963:-72.5365,0,-48.9495	0/1:78:41,37:41:1378:37:1320:-95.6216,0,-100.828	0/0:71:71,0:71:2374:0:0:0,-21.3731,-213.914	0/0:51:51,0:51:1726:0:0:0,-15.3525,-155.618	0/0:67:67,0:67:2293:0:0:0,-20.169,-206.628	0/1:50:18,32:18:610:32:1144:-88.218,0,-40.1667	0/1:38:26,12:26:900:12:432:-27.7821,0,-69.8722	0/0:28:27,0:27:905:0:0:0,-8.12781,-81.501	0/1:44:29,15:29:958:15:540:-35.6912,0,-73.273	0/1:95:61,34:61:2133:34:1224:-81.8692,0,-163.639	0/1:47:26,21:26:890:21:748:-53.4969,0,-66.2627	0/1:45:17,28:17:574:28:1008:-77.49,0,-38.4322	0/0:27:27,0:27:952:0:0:0,-8.12781,-85.9952	0/0:16:15,1:15:496:1:36:0,-1.2182,-41.3563	0/1:27:13,14:13:460:14:495:-36.7552,0,-33.6076	0/0:173:173,0:173:5963:0:0:0,-52.0782,-536.796	0/1:186:92,94:92:3208:94:3372:-247.704,0,-232.955	0/0:29:29,0:29:975:0:0:0,-8.72987,-88.0537	0/0:185:182,2:182:6301:2:72:0,-48.9126,-560.368	0/1:74:41,33:41:1424:33:1188:-84.9524,0,-106.176	0/1:82:45,37:45:1526:37:1308:-93.3343,0,-112.942	0/1:13:3,10:3:84:10:360:-28.8309,0,-3.92475	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:19:5,14:5:172:14:504:-39.9785,0,-10.0984	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:149:78,71:78:2598:71:2541:-184.079,0,-189.21	0/1:87:59,27:59:2081:27:963:-60.7376,0,-161.311	0/0:60:60,0:60:2012:0:0:0,-18.0618,-181.348	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/0:62:62,0:62:2091:0:0:0,-18.6639,-188.455	0/1:26:11,15:11:384:15:536:-40.748,0,-27.0679	0/1:48:21,27:21:722:27:972:-73.3485,0,-50.8481	0/1:52:27,25:27:930:25:885:-64.3129,0,-68.3571	0/1:50:23,27:23:746:27:964:-72.0253,0,-52.3892	0/0:38:38,0:38:1310:0:0:0,-11.4391,-118.195	0/0:75:74,0:74:2579:0:0:0,-22.2762,-232	0/1:99:50,49:50:1727:49:1733:-126.45,0,-125.909	0/1:84:42,42:42:1445:42:1483:-108.477,0,-105.056	0/0:50:50,0:50:1748:0:0:0,-15.0515,-157.601	0/1:91:53,38:53:1810:38:1356:-94.9462,0,-135.784	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:59:32,27:32:1105:27:972:-70.0371,0,-81.9935	0/1:25:5,20:5:176:20:716:-57.242,0,-8.65927	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:75:75,0:75:2611:0:0:0,-22.5772,-235.239	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	.:.:.:.:.:.:.:.	0/1:13:4,9:4:129:9:320:-25.229,0,-8.01427	0/1:70:22,48:22:754:48:1724:-134.373,0,-47.1037	0/0:95:95,0:95:3253:0:0:0,-28.5978,-292.993	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:155:155,0:155:5329:0:0:0,-46.6596,-479.761	0/1:103:57,46:57:1957:46:1656:-118.322,0,-145.396	0/0:52:51,1:51:1786:1:36:0,-12.0553,-157.423	0/0:43:43,0:43:1500:0:0:0,-12.9443,-135.29	0/0:76:76,0:76:2609:0:0:0,-22.8783,-235.055	0/0:53:53,0:53:1812:0:0:0,-15.9546,-163.356	0/0:16:16,0:16:526:0:0:0,-4.81648,-47.6512	0/0:56:56,0:56:1952:0:0:0,-16.8577,-175.951	0/1:47:32,15:32:1052:15:523:-33.25,0,-80.8254	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:117:41,76:41:1431:76:2707:-208.653,0,-93.8645	0/0:92:92,0:92:3183:0:0:0,-27.6948,-286.697	0/0:77:77,0:77:2646:0:0:0,-23.1793,-238.384	0/1:119:49,69:49:1687:69:2476:-187.36,0,-116.378	0/1:10:8,2:8:256:2:72:-3.82642,0,-20.3419	0/0:46:45,0:45:1573:0:0:0,-13.5463,-141.498	1/1:9:1,8:1:27:8:288:-23.5676,-0.00948716,0	0/1:68:38,29:38:1318:29:1044:-73.8908,0,-98.5354	0/1:45:14,31:14:479:31:1096:-85.4014,0,-29.889	0/0:116:116,0:116:4017:0:0:0,-34.9195,-361.725	0/0:86:85,1:85:2748:1:36:0,-22.2903,-243.958	0/0:39:39,0:39:1286:0:0:0,-11.7402,-116.027	0/1:54:34,20:34:1163:20:716:-48.5121,0,-88.7143	0/1:116:70,46:70:2373:46:1639:-112.878,0,-178.907	0/0:30:30,0:30:1006:0:0:0,-9.0309,-90.8417	0/0:68:68,0:68:2296:0:0:0,-20.47,-206.896	0/0:63:63,0:63:2097:0:0:0,-18.9649,-188.994	0/0:27:27,0:27:896:0:0:0,-8.12781,-80.9421	0/1:89:29,60:29:1000:60:2152:-167.156,0,-63.5155	0/1:54:13,41:13:452:41:1455:-114.99,0,-24.7555	0/0:93:92,0:92:3161:0:0:0,-27.6948,-284.487	0/0:88:88,0:88:2909:0:0:0,-26.4906,-262.043
chr04	31951222	.	A	G	26491.1	PASS	AB=0.448398;ABP=88.1707;AC=48;AF=0.258065;AN=186;AO=1674;CIGAR=1X;DP=8466;DPB=8466;DPRA=0.863086;EPP=3638.06;EPPR=14729.9;GTI=5;LEN=1;MEANALT=1.01818;MQM=59.9982;MQMR=59.9937;NS=93;NUMALT=1;ODDS=1.34366;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59949;QR=242632;RO=6790;RPL=1674;RPP=3638.06;RPPR=14729.9;RPR=0;RUN=1;SAF=0;SAP=3638.06;SAR=1674;SRF=0;SRP=14747.3;SRR=6790;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:113:112,1:112:3980:1:36:0,-30.4181,-354.792	0/0:109:109,0:109:3899:0:0:0,-32.8123,-351.103	0/0:212:212,0:212:7572:0:0:0,-63.8184,-681.519	0/1:21:16,5:16:576:5:180:-10.2304,0,-45.8534	0/1:29:16,13:16:561:13:464:-33.3676,0,-42.0873	0/1:131:96,35:96:3439:35:1252:-73.5501,0,-270.287	0/0:139:137,2:137:4880:2:72:0,-35.0064,-432.514	0/0:54:54,0:54:1908:0:0:0,-16.2556,-171.995	0/0:154:154,0:154:5486:0:0:0,-46.3586,-493.853	0/1:35:18,17:18:648:17:604:-44.1546,0,-48.1158	0/1:68:29,39:29:1036:39:1392:-105.108,0,-73.0839	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:51:25,26:25:884:26:936:-69.2069,0,-64.5258	0/1:73:36,37:36:1292:37:1332:-98.2072,0,-94.6086	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:29:14,15:14:500:15:536:-39.8449,0,-36.6063	0/1:165:110,55:110:3917:55:1964:-127.365,0,-303.053	0/1:163:74,89:74:2648:89:3180:-237.357,0,-189.499	0/1:37:21,16:21:737:16:576:-41.0369,0,-55.5125	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:118:110,8:110:3943:8:284:0,-9.61818,-329.157	0/1:57:34,23:34:1220:23:820:-56.9638,0,-92.9481	0/0:309:309,0:309:11045:0:0:0,-93.0183,-993.944	0/1:190:103,87:103:3657:87:3112:-223.111,0,-272.136	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:299:299,0:299:10713:0:0:0,-90.008,-964.074	0/1:198:88,110:88:3118:110:3940:-295.188,0,-221.241	0/1:109:48,60:48:1728:60:2148:-160.716,0,-122.934	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:10:7,3:7:244:3:108:-7.06487,0,-19.2891	.:.:.:.:.:.:.:.	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:194:91,103:91:3256:103:3692:-274.082,0,-234.861	0/1:163:94,69:94:3380:69:2472:-173.666,0,-255.347	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:185:185,0:185:6600:0:0:0,-55.6905,-593.764	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2693	0/1:62:46,16:46:1644:16:572:-33.1496,0,-129.585	0/1:66:30,36:30:1076:36:1296:-97.076,0,-77.2849	0/1:56:29,27:29:1040:27:972:-70.9402,0,-77.0567	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.882	0/0:95:95,0:95:3401:0:0:0,-28.5978,-306.303	0/1:135:102,33:102:3652:33:1188:-66.5895,0,-288.245	0/1:83:45,38:45:1592:38:1368:-98.4353,0,-118.582	0/0:169:168,0:168:5990:0:0:0,-50.573,-538.845	0/1:132:77,55:77:2756:55:1976:-138.379,0,-208.546	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:132:77,55:77:2760:55:1980:-138.738,0,-208.906	0/1:42:27,15:27:964:15:536:-35.9316,0,-74.4336	0/1:17:3,14:3:108:14:500:-40.2187,0,-4.95766	0/0:153:153,0:153:5436:0:0:0,-46.0576,-489.372	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:25:9,16:9:324:16:568:-43.9261,0,-21.9801	0/1:65:32,33:32:1152:33:1180:-86.9411,0,-84.4228	0/0:123:122,1:122:4376:1:36:0,-33.4284,-390.415	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:216:216,0:216:7704:0:0:0,-65.0225,-693.396	0/1:148:80,68:80:2860:68:2436:-174.943,0,-213.085	0/0:94:92,2:92:3292:2:72:0,-21.4601,-289.663	0/0:85:85,0:85:3005:0:0:0,-25.5875,-270.679	0/0:168:168,0:168:6001:0:0:0,-50.573,-540.195	0/0:182:177,5:177:6325:5:165:0,-39.6139,-554.168	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/1:90:46,44:46:1643:44:1580:-115.399,0,-121.065	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	0/1:87:66,21:66:2376:21:752:-41.8166,0,-187.908	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:189:189,0:189:6740:0:0:0,-56.8947,-606.678	0/1:199:97,102:97:3455:102:3652:-268.979,0,-251.258	0/1:53:30,23:30:1076:23:824:-58.5287,0,-81.1983	0/0:107:106,1:106:3804:1:36:0,-28.6119,-338.959	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:117:68,49:68:2413:49:1752:-122.743,0,-182.205	0/1:80:58,22:58:2072:22:784:-46.8015,0,-162.668	0/0:244:244,0:244:8756:0:0:0,-73.4513,-788.026	0/0:106:106,0:106:3776:0:0:0,-31.9092,-340.038	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:65:36,29:36:1278:29:1040:-74.3474,0,-95.7547	0/1:120:65,55:65:2328:55:1968:-141.271,0,-173.656	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:79:40,39:40:1440:39:1396:-102.157,0,-106.116	0/1:36:9,27:9:316:27:968:-76.6003,0,-17.9418	0/0:142:141,1:141:5032:1:36:0,-39.148,-449.427	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165
chr04	31964829	.	G	A	82819.4	PASS	AB=0.474005;ABP=17.4609;AC=138;AF=0.734043;AN=188;AO=4055;CIGAR=1X;DP=5380;DPB=5380;DPRA=57.8387;EPP=8808.33;EPPR=2878.04;GTI=4;LEN=1;MEANALT=1.01075;MQM=59.9805;MQMR=60;NS=94;NUMALT=1;ODDS=1.51724;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141920;QR=46232;RO=1324;RPL=0;RPP=8808.33;RPPR=2878.04;RPR=4055;RUN=1;SAF=0;SAP=8808.33;SAR=4055;SRF=0;SRP=2878.04;SRR=1324;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:16,2:16:556:2:72:-1.41818,0,-44.9486	1/1:50:0,50:0:0:50:1763:-158.953,-15.0515,0	1/1:113:0,113:0:0:113:3962:-356.778,-34.0164,0	1/1:163:1,162:1:36:162:5566:-497.478,-45.4696,0	0/1:21:17,4:17:587:4:144:-6.99199,0,-46.8322	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:38:24,14:24:843:14:496:-33.5351,0,-64.7489	1/1:68:0,68:0:0:68:2418:-217.876,-20.47,0	1/1:74:0,74:0:0:74:2622:-236.228,-22.2762,0	1/1:40:0,40:0:0:40:1338:-120.71,-12.0412,0	0/1:35:20,15:20:712:15:536:-38.0388,0,-53.8706	0/1:54:32,22:32:1105:22:770:-53.3637,0,-83.4988	1/1:47:0,47:0:0:47:1663:-149.957,-14.1484,0	1/1:46:0,46:0:0:46:1622:-146.267,-13.8474,0	1/1:20:0,20:0:0:20:690:-62.4193,-6.0206,0	0/1:26:18,8:18:600:8:280:-17.7125,0,-46.487	0/1:16:10,6:10:351:6:207:-14.1504,0,-27.1102	1/1:12:0,12:0:0:12:415:-37.6803,-3.61236,0	0/1:14:6,8:6:212:8:284:-21.6889,0,-15.2104	0/1:132:59,73:59:2015:73:2595:-194.063,0,-141.881	0/1:72:39,33:39:1372:33:1176:-84.4736,0,-102.104	0/1:86:70,16:70:2417:16:568:-25.5633,0,-191.897	1/1:90:0,90:0:0:90:3144:-283.187,-27.0927,0	1/1:40:2,38:2:68:38:1313:-112.009,-5.58349,0	0/1:48:26,22:26:899:22:769:-55.0792,0,-66.7737	1/1:136:0,136:0:0:136:4732:-426.048,-40.9401,0	0/1:130:67,63:67:2310:63:2176:-156.972,0,-169.024	1/1:16:0,16:0:0:16:570:-51.6324,-4.81648,0	1/1:141:0,141:0:0:141:4922:-443.142,-42.4452,0	0/1:95:47,48:47:1649:48:1704:-125.048,0,-120.098	0/1:63:40,23:40:1381:23:816:-54.7968,0,-105.617	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/0:17:16,1:16:563:1:36:0,-1.51923,-47.4009	0/1:7:2,5:2:68:5:172:-13.7108,0,-4.3505	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:101:49,52:49:1743:52:1826:-134.215,0,-126.75	0/1:104:49,55:49:1724:55:1905:-140.419,0,-124.138	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:66:0,66:0:0:66:2279:-205.371,-19.868,0	0/1:16:13,3:13:452:3:108:-5.25869,0,-36.1946	0/1:58:38,20:38:1343:20:716:-47.308,0,-103.71	0/1:25:11,14:11:387:14:492:-37.0866,0,-27.6402	0/1:28:12,16:12:424:16:559:-42.2088,0,-30.0676	1/1:38:0,38:0:0:38:1334:-120.356,-11.4391,0	1/1:84:1,83:1:36:83:2916:-259.078,-21.6882,0	0/1:119:57,62:57:2006:62:2176:-160.282,0,-144.99	0/1:87:30,57:30:1035:57:1991:-153.215,0,-67.2684	1/1:110:0,110:0:0:110:3813:-343.375,-33.1133,0	0/1:98:53,45:53:1828:45:1515:-107.134,0,-135.297	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:102:51,51:51:1773:51:1786:-130.316,0,-129.143	0/1:40:23,17:23:812:17:595:-41.8355,0,-61.3597	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:108:3,105:3:99:105:3677:-321.9,-23.2747,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/1:28:11,17:11:388:17:595:-45.4478,0,-26.8285	1/1:60:0,60:0:0:60:2090:-188.37,-18.0618,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:168:1,167:1:36:167:5894:-526.978,-46.9748,0	0/1:102:60,42:60:2119:42:1479:-102.699,0,-160.274	1/1:51:2,49:2:72:49:1706:-146.985,-8.51581,0	1/1:61:0,61:0:0:61:2129:-191.877,-18.3628,0	1/1:136:0,136:0:0:136:4756:-428.203,-40.9401,0	1/1:74:0,74:0:0:74:2595:-233.801,-22.2762,0	1/1:24:0,24:0:0:24:846:-76.4578,-7.22472,0	1/1:29:0,29:0:0:29:982:-88.6843,-8.72987,0	0/1:27:12,15:12:419:15:536:-40.447,0,-29.9149	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:55:25,30:25:871:30:1042:-77.5313,0,-62.1488	1/1:82:0,81:0:0:81:2831:-254.808,-24.3834,0	1/1:138:1,137:1:36:137:4798:-428.387,-37.9439,0	0/1:101:45,56:45:1583:56:1970:-147.17,0,-112.356	0/1:83:45,38:45:1577:38:1294:-91.741,0,-117.233	1/1:70:1,69:1:36:69:2425:-214.909,-17.4738,0	0/1:10:5,5:5:180:5:167:-12.3481,0,-13.5418	0/1:107:52,55:52:1823:55:1920:-140.864,0,-132.14	0/1:71:24,47:24:835:47:1641:-126.603,0,-54.0934	1/1:151:0,151:0:0:151:5315:-478.491,-45.4555,0	1/1:29:0,29:0:0:29:1005:-90.7585,-8.72987,0	1/1:30:0,30:0:0:30:1063:-95.9808,-9.0309,0	0/1:33:18,15:18:628:15:536:-38.6408,0,-46.9115	0/1:65:41,24:41:1428:24:852:-57.4334,0,-109.246	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:47:0,47:0:0:47:1613:-145.424,-14.1484,0	1/1:34:0,34:0:0:34:1204:-108.666,-10.235,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:54:28,26:28:987:26:906:-65.5978,0,-72.8874	0/1:51:31,20:31:1104:20:720:-49.7762,0,-84.3181	1/1:121:0,121:0:0:121:4240:-381.786,-36.4246,0	1/1:42:0,42:0:0:42:1489:-134.303,-12.6433,0
chr04	31964853	.	C	G	109615	PASS	AB=0.472669;ABP=19.1532;AC=138;AF=0.734043;AN=188;AO=4095;CIGAR=1X;DP=5439;DPB=5439;DPRA=58.4731;EPP=15.4235;EPPR=3.72977;GTI=4;LEN=1;MEANALT=1.12903;MQM=59.9871;MQMR=60;NS=94;NUMALT=1;ODDS=0.430215;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144947;QR=47599;RO=1331;RPL=2124;RPP=15.4235;RPPR=3.72977;RPR=1971;RUN=1;SAF=0;SAP=8895.19;SAR=4095;SRF=0;SRP=2893.24;SRR=1331;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:16,2:16:576:2:68:-1.03917,0,-46.7564	1/1:50:0,50:0:0:50:1782:-160.661,-15.0515,0	1/1:112:0,112:0:0:112:3975:-357.941,-33.7154,0	1/1:163:1,162:1:36:162:5750:-514.009,-45.4696,0	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:39:26,13:26:936:13:468:-30.7195,0,-72.8193	1/1:69:0,69:0:0:69:2436:-219.497,-20.7711,0	1/1:74:0,74:0:0:74:2598:-234.067,-22.2762,0	1/1:42:0,42:0:0:42:1477:-133.222,-12.6433,0	0/1:34:19,15:19:684:15:525:-37.343,0,-51.6553	0/1:53:31,22:31:1084:22:779:-54.4775,0,-81.9115	1/1:47:0,47:0:0:47:1596:-143.92,-14.1484,0	1/1:44:0,44:0:0:44:1514:-136.548,-13.2453,0	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	0/1:29:20,9:20:707:9:308:-19.3214,0,-55.2247	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:139:61,76:61:2188:76:2683:-200.114,0,-155.585	0/1:72:39,33:39:1400:33:1184:-85.1942,0,-104.625	0/1:86:70,16:70:2497:16:563:-25.1106,0,-199.093	1/1:95:0,95:0:0:95:3365:-303.067,-28.5979,0	1/1:41:2,39:2:72:39:1377:-117.39,-5.50551,0	0/1:51:27,24:27:941:24:860:-62.3693,0,-69.6492	1/1:141:0,141:0:0:141:5008:-450.871,-42.4452,0	0/1:130:67,63:67:2400:63:2234:-162.189,0,-177.123	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:148:0,147:0:0:147:5174:-465.447,-44.2514,0	0/1:96:47,49:47:1692:49:1728:-126.905,0,-123.668	0/1:64:39,25:39:1389:25:879:-60.1609,0,-106.041	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:17:16,1:16:572:1:32:0,-1.9182,-48.6141	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:5:1,4:1:36:4:135:-10.9774,0,-2.09312	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:101:50,51:50:1800:51:1811:-132.867,0,-131.878	0/1:104:49,55:49:1764:55:1956:-145.009,0,-127.737	1/1:14:0,14:0:0:14:487:-44.1592,-4.21442,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:71:0,71:0:0:71:2531:-228.037,-21.3731,0	0/1:16:12,4:12:428:4:144:-8.49714,0,-34.0423	0/1:62:39,23:39:1400:23:816:-55.0979,0,-107.635	0/1:25:10,14:10:360:14:496:-37.3901,0,-25.1598	0/1:28:12,16:12:432:16:572:-43.3846,0,-30.7924	1/1:37:0,37:0:0:37:1294:-116.76,-11.1381,0	1/1:83:1,81:1:36:81:2876:-255.479,-21.446,0	0/1:118:58,60:58:2072:60:2114:-155.007,0,-151.229	0/1:81:29,51:29:1036:51:1815:-139.059,0,-69.1118	1/1:114:0,114:0:0:114:4028:-362.71,-34.3174,0	0/1:99:53,46:53:1908:46:1643:-118.356,0,-142.196	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:105:52,53:52:1855:53:1883:-138.14,0,-135.621	0/1:39:22,17:22:783:17:604:-42.9504,0,-59.0528	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:112:3,108:3:108:108:3806:-332.665,-23.699,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:28:11,17:11:396:17:601:-45.9896,0,-27.5539	1/1:59:0,59:0:0:59:2109:-190.078,-17.7608,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:167:1,166:1:36:166:5912:-528.592,-46.6737,0	0/1:105:63,40:63:2260:40:1436:-98.1908,0,-172.316	1/1:48:2,46:2:72:46:1625:-139.701,-7.61272,0	1/1:62:0,62:0:0:62:2204:-198.624,-18.6639,0	1/1:135:0,135:0:0:135:4809:-432.966,-40.6391,0	1/1:74:0,73:0:0:73:2604:-234.249,-21.9752,0	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	1/1:30:0,30:0:0:30:1063:-95.9808,-9.0309,0	0/1:28:13,15:13:464:15:536:-40.146,0,-33.6687	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:60:25,33:25:896:33:1176:-88.3284,0,-63.1409	1/1:83:0,83:0:0:83:2951:-265.822,-24.9855,0	1/1:141:0,141:0:0:141:4970:-447.451,-42.4452,0	0/1:102:45,56:45:1612:56:1976:-147.349,0,-114.606	0/1:83:45,38:45:1604:38:1339:-95.8142,0,-119.665	1/1:72:1,71:1:36:71:2523:-223.722,-18.0759,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:110:52,58:52:1851:58:2051:-151.747,0,-133.756	0/1:73:25,48:25:892:48:1703:-131.579,0,-58.6245	1/1:155:0,155:0:0:155:5443:-490.006,-46.6597,0	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	0/1:33:18,15:18:644:15:535:-38.5505,0,-48.3566	0/1:63:41,22:41:1463:22:779:-51.4672,0,-113	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:46:0,46:0:0:46:1580:-142.482,-13.8474,0	1/1:34:0,34:0:0:34:1199:-108.215,-10.235,0	1/1:20:0,20:0:0:20:696:-62.9597,-6.0206,0	0/1:54:28,26:28:977:26:917:-66.589,0,-71.9847	0/1:50:31,19:31:1116:19:684:-46.8388,0,-85.7002	1/1:122:0,122:0:0:122:4323:-389.25,-36.7257,0	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0
chr04	31964886	.	A	T	22597.7	PASS	AB=0.52421;ABP=15.7324;AC=50;AF=0.265957;AN=188;AO=1338;CIGAR=1X;DP=5492;DPB=5492;DPRA=0.907004;EPP=2908.44;EPPR=8910.74;GTI=3;LEN=1;MEANALT=1;MQM=60;MQMR=59.9884;NS=94;NUMALT=1;ODDS=0.933605;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47883;QR=148619;RO=4154;RPL=1337;RPP=2899.76;RPPR=8867.64;RPR=1;RUN=1;SAF=1;SAP=2899.76;SAR=1337;SRF=5;SRP=8979.93;SRR=4149;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:2,15:2:72:15:536:-43.4573,0,-1.71921	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/0:166:164,2:164:5868:2:68:0,-43.5133,-521.774	0/1:21:4,17:4:144:17:608:-48.7304,0,-6.99199	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:39:13,26:13:464:26:936:-72.8193,0,-30.3573	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	0/1:55:23,32:23:824:32:1152:-87.4335,0,-57.9267	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:27:8,19:8:284:19:684:-53.7625,0,-17.7755	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/1:138:76,62:76:2712:62:2228:-159.242,0,-202.782	0/1:73:33,40:33:1180:40:1417:-105.85,0,-84.5329	0/1:89:16,73:16:568:73:2567:-204.485,0,-24.6602	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:41:39,2:39:1400:2:72:0,-5.50551,-119.462	0/1:52:25,27:25:892:27:968:-71.7838,0,-64.9461	0/0:142:142,0:142:5076:0:0:0,-42.7463,-456.985	0/1:133:65,68:65:2305:68:2436:-179.458,0,-167.673	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:151:151,0:151:5386:0:0:0,-45.4555,-484.87	0/1:98:49,49:49:1756:49:1760:-129.183,0,-128.823	0/1:64:23,41:23:820:41:1460:-112.43,0,-54.8566	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:17:1,16:1:21:16:576:-50.075,-3.01756,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:106:56,50:56:2012:50:1796:-130.013,0,-149.444	0/1:103:54,49:54:1924:49:1764:-128.038,0,-142.431	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.846	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	0/1:59:22,37:22:784:37:1332:-102.422,0,-53.1231	0/1:26:15,11:15:536:11:396:-28.156,0,-40.748	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/1:119:64,55:64:2284:55:1972:-141.932,0,-169.999	0/1:83:55,28:55:1961:28:1008:-66.0509,0,-151.648	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.746	0/1:99:45,54:45:1620:54:1924:-143.635,0,-116.288	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:103:53,50:53:1900:50:1796:-130.916,0,-140.272	0/1:40:16,24:16:568:24:864:-66.0414,0,-39.4107	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:113:109,4:109:3904:4:144:0,-20.7028,-338.24	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:11:6,5:6:212:5:176:-12.8737,0,-16.1135	0/1:28:17,11:17:604:11:396:-27.5539,0,-46.2618	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:171:171,0:171:6112:0:0:0,-51.4761,-550.182	0/1:104:41,63:41:1468:63:2260:-172.355,0,-101.109	0/0:51:49,2:49:1748:2:72:0,-8.51581,-150.768	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/0:137:137,0:137:4892:0:0:0,-41.2411,-440.434	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:59:33,26:33:1184:26:936:-66.7987,0,-89.1075	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:142:142,0:142:5080:0:0:0,-42.7463,-457.345	0/1:102:56,46:56:2012:46:1644:-117.544,0,-150.648	0/1:79:37,42:37:1324:42:1493:-110.881,0,-95.6807	0/0:76:75,1:75:2688:1:36:0,-19.28,-238.566	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:112:58,54:58:2076:54:1913:-138.73,0,-153.395	0/1:71:46,25:46:1628:25:892:-59.2266,0,-125.436	0/0:147:147,0:147:5256:0:0:0,-44.2514,-473.178	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:64:24,40:24:864:40:1417:-108.559,0,-58.8166	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:49:49,0:49:1764:0:0:0,-14.7505,-158.854	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:56:30,26:30:1080:26:932:-67.3412,0,-80.6556	0/1:50:19,31:19:684:31:1116:-85.7002,0,-46.8388	0/0:130:130,0:130:4622:0:0:0,-39.1339,-416.143	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655
chr04	31965052	.	T	C	495562	PASS	AB=0.736343;ABP=2409.98;AC=153;AF=0.81383;AN=188;AO=22364;CIGAR=1X;DP=23770;DPB=23770;DPRA=0;EPP=48565.8;EPPR=3036.56;GTI=14;LEN=1;MEANALT=1.08511;MQM=59.953;MQMR=59.9671;NS=94;NUMALT=1;ODDS=6.65832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=799616;QR=49921;RO=1397;RPL=22364;RPP=48565.8;RPPR=3036.56;RPR=0;RUN=1;SAF=0;SAP=48565.8;SAR=22364;SRF=0;SRP=3036.56;SRR=1397;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:15,38:15:532:38:1356:-106.386,0,-32.2585	1/1:430:0,430:0:0:430:15359:-1381.98,-129.443,0	1/1:295:0,295:0:0:295:10545:-948.959,-88.8039,0	1/1:298:0,298:0:0:298:10630:-956.608,-89.7069,0	1/1:71:5,66:5:180:66:2364:-196.466,-4.82107,0	1/1:133:10,123:10:360:123:4392:-363.142,-7.72461,0	0/1:152:20,132:20:716:132:4701:-377.477,0,-19.0112	1/1:273:0,273:0:0:273:9757:-878.078,-82.1812,0	1/1:118:0,118:0:0:118:4228:-380.7,-35.5215,0	1/1:139:0,139:0:0:139:4984:-448.706,-41.8432,0	1/1:292:22,270:22:784:270:9696:-801.695,-17.0168,0	0/1:99:60,39:60:2152:39:1381:-94.7848,0,-164.145	1/1:95:0,95:0:0:95:3405:-306.662,-28.5979,0	1/1:92:0,92:0:0:92:3285:-295.868,-27.6948,0	1/1:72:1,71:1:36:71:2556:-226.69,-18.0759,0	0/1:63:27,36:27:968:36:1282:-96.7182,0,-68.4725	0/1:68:18,50:18:644:50:1800:-141.812,0,-37.8206	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:159:23,136:23:828:136:4892:-392.564,0,-26.9803	0/1:212:33,177:33:1188:177:6341:-507.198,0,-43.6525	0/1:141:47,94:47:1688:94:3342:-258.55,0,-109.733	0/1:107:36,71:36:1284:71:2548:-197.357,0,-83.6532	1/1:166:1,165:1:36:165:5905:-527.942,-46.3727,0	1/1:211:0,211:0:0:211:7550:-679.537,-63.5173,0	0/1:102:37,65:37:1328:65:2320:-178.355,0,-89.1172	1/1:384:0,384:0:0:384:13710:-1233.59,-115.596,0	0/1:285:92,193:92:3281:193:6887:-534.102,0,-209.715	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:510:0,510:0:0:510:18151:-1633.17,-153.525,0	0/1:92:28,64:28:992:64:2266:-176.505,0,-61.8996	0/1:145:24,121:24:864:121:4322:-345.503,0,-34.4332	1/1:418:4,413:4:144:413:14789:-1317.43,-112.576,0	1/1:571:0,571:0:0:571:20406:-1836.03,-171.888,0	1/1:494:1,493:1:36:493:17605:-1580.4,-145.111,0	1/1:1272:3,1268:3:108:1268:45351:-4069.96,-372.894,0	1/1:1016:0,1015:0:0:1015:36268:-3261.8,-305.545,0	0/1:230:96,134:96:3429:134:4808:-363.634,0,-239.585	0/1:158:34,124:34:1201:124:4433:-351.577,0,-60.8309	1/1:496:0,496:0:0:496:17744:-1596.57,-149.311,0	1/1:1020:1,1019:1:36:1019:36418:-3272.83,-303.452,0	1/1:202:2,200:2:72:200:7148:-636.54,-53.9713,0	1/1:182:13,169:13:453:169:6064:-504.76,-13.6878,0	0/1:158:37,121:37:1309:121:4339:-343.121,0,-70.5468	0/1:77:24,53:24:860:53:1904:-148.457,0,-54.5425	0/1:49:16,33:16:572:33:1184:-92.117,0,-37.063	1/1:146:0,146:0:0:146:5205:-468.577,-43.9504,0	1/1:142:0,142:0:0:142:5077:-457.058,-42.7463,0	0/1:178:69,109:69:2468:109:3893:-296.978,0,-168.791	0/1:109:25,84:25:873:84:3004:-237.779,0,-46.0723	1/1:223:0,223:0:0:223:7966:-716.958,-67.1297,0	0/1:178:35,143:35:1244:143:5105:-405.917,0,-58.6813	1/1:652:3,649:3:108:649:23187:-2075.99,-186.196,0	0/1:214:42,172:42:1504:172:6180:-491.874,0,-71.2342	0/1:35:13,22:13:468:22:792:-61.0687,0,-31.9236	1/1:168:6,162:6:216:162:5777:-500.255,-30.7825,0	1/1:166:0,166:0:0:166:5957:-536.223,-49.971,0	1/1:67:0,67:0:0:67:2389:-215.263,-20.169,0	1/1:1374:1,1372:1:36:1372:49126:-4415.16,-410.076,0	1/1:788:1,787:1:36:787:28122:-2526.46,-233.613,0	0/1:123:48,75:48:1724:75:2681:-204.507,0,-118.419	1/1:106:1,105:1:36:105:3761:-335.087,-28.3109,0	1/1:752:0,751:0:0:751:26924:-2422.09,-226.074,0	1/1:211:0,211:0:0:211:7570:-681.332,-63.5173,0	0/1:193:59,134:59:2116:134:4778:-372.074,0,-132.61	1/1:94:4,90:4:144:90:3228:-277.428,-14.9832,0	1/1:159:0,159:0:0:159:5685:-511.765,-47.8638,0	1/1:249:1,248:1:36:248:8874:-794.993,-71.3582,0	1/1:257:0,257:0:0:257:9209:-828.585,-77.3647,0	1/1:425:1,424:1:36:424:15196:-1363.76,-124.339,0	1/1:143:0,143:0:0:143:5101:-459.234,-43.0473,0	0/1:43:12,31:12:432:31:1104:-86.7263,0,-26.2769	1/1:484:3,481:3:108:481:17104:-1528.92,-135.623,0	0/1:94:41,53:41:1472:53:1896:-142.621,0,-104.479	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:265:0,264:0:0:264:9377:-843.535,-79.4719,0	0/1:188:24,164:24:856:164:5846:-469.656,0,-20.7675	0/1:183:33,150:33:1165:150:5341:-425.734,0,-50.0665	1/1:158:1,157:1:36:157:5609:-501.333,-43.9645,0	1/1:804:5,799:5:165:799:28545:-2553.03,-226.855,0	0/1:140:17,123:17:608:123:4405:-354.476,0,-12.9078	0/1:86:28,58:28:989:58:2088:-162.301,0,-63.4288	1/1:411:1,410:1:36:410:14687:-1317.85,-120.125,0	1/1:122:0,121:0:0:121:4298:-386.59,-36.4246,0	1/1:89:0,89:0:0:89:3184:-286.782,-26.7917,0	0/1:72:25,47:25:900:47:1688:-130.532,0,-59.6469	0/1:157:61,96:61:2184:96:3452:-263.628,0,-149.564	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:102:0,102:0:0:102:3637:-327.534,-30.7051,0	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	1/1:546:0,546:0:0:546:19522:-1756.5,-164.362,0	0/1:544:56,488:56:2012:488:17469:-1408.07,0,-17.5928	0/1:74:51,23:51:1832:23:824:-52.2063,0,-142.885	1/1:8:0,8:0:0:8:288:-26.2666,-2.40824,0	1/1:116:0,116:0:0:116:4125:-371.434,-34.9195,0
chr04	31974849	.	TATTTTT	CAATTTC,CATTTTT	189184	PASS	AB=0.443212,0.549689;ABP=129.283,99.688;AC=138,50;AF=0.734043,0.265957;AN=188;AO=6458,2505;CIGAR=1X1M1X3M1X,1X6M;DP=9021;DPB=9020.14;DPRA=39.2,1.19172;EPP=14026.4,5407.86;EPPR=0;GTI=1;LEN=7,1;MEANALT=2.19565,2.5614;MQM=54.1451,59.9816;MQMR=0;NS=94;NUMALT=2;ODDS=1.05791;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=227768,89248;QR=0;RO=0;RPL=6458,2501;RPP=14026.4,5407.86;RPPR=0;RPR=0,4;RUN=1,1;SAF=0,0;SAP=14026.4,5442.55;SAR=6458,2505;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:37:0,20,17:0:0:20,17:713,612:-108.261,-50.2959,-44.2753,-58.3227,0,-53.2052	1/1:131:0,128,3:0:0:128,3:4523,108:-405.454,-38.5318,0,-396.642,-29.3598,-395.739	1/1:122:0,121,0:0:0:121,0:4293,0:-384.776,-36.4246,0,-384.776,-36.4246,-384.776	1/1:186:0,185,0:0:0:185,0:6506,0:-583.669,-55.6906,0,-583.669,-55.6906,-583.669	1/2:83:0,41,41:0:0:41,41:1447,1453:-235.629,-118.469,-106.127,-117.258,0,-104.916	1/2:64:0,21,43:0:0:21,43:734,1514:-183.146,-123.605,-117.283,-59.8904,0,-46.9461	1/2:97:0,42,55:0:0:42,55:1482,1972:-281.748,-161.198,-148.555,-120.904,0,-104.348	1/1:175:0,175,0:0:0:175,0:6146,0:-549.794,-52.6803,0,-549.794,-52.6803,-549.794	1/1:72:0,72,0:0:0:72,0:2524,0:-226.435,-21.6742,0,-226.435,-21.6742,-226.435	1/1:130:0,129,0:0:0:129,0:4542,0:-407.862,-38.8329,0,-407.862,-38.8329,-407.862	1/2:38:0,23,15:0:0:23,15:825,540:-111.659,-44.4211,-37.4974,-67.5975,0,-63.0821	1/2:70:0,38,32:0:0:38,32:1348,1140:-202.816,-93.2762,-81.8371,-109.894,0,-100.261	1/1:60:0,59,0:0:0:59,0:2058,0:-184.406,-17.7608,0,-184.406,-17.7608,-184.406	1/1:56:0,56,0:0:0:56,0:1985,0:-177.991,-16.8577,0,-177.991,-16.8577,-177.991	1/1:40:0,40,0:0:0:40,0:1397,0:-125.878,-12.0412,0,-125.878,-12.0412,-125.878	1/2:49:0,28,21:0:0:28,21:994,744:-141.837,-60.9627,-52.5339,-81.2284,0,-74.9068	1/2:66:0,35,30:0:0:35,30:1228,1068:-186.433,-87.114,-76.578,-99.384,0,-90.3531	1/1:46:0,45,0:0:0:45,0:1595,0:-142.856,-13.5464,0,-142.856,-13.5464,-142.856	1/2:26:0,20,6:0:0:20,6:706,216:-75.3227,-17.9843,-11.9637,-57.6964,0,-55.8902	1/2:171:0,63,107:0:0:63,107:2218,3813:-490.857,-310.797,-291.832,-180.053,0,-147.843	1/2:158:0,68,89:0:0:68,89:2391,3169:-452.535,-258.379,-237.909,-194.245,0,-167.454	1/2:180:0,42,134:0:0:42,134:1483,4737:-506.562,-385.861,-373.217,-120.763,0,-80.4246	1/1:86:0,86,0:0:0:86,0:3023,0:-271.508,-25.8886,0,-271.508,-25.8886,-271.508	1/1:101:0,98,2:0:0:98,2:3475,72:-311.879,-29.5009,0,-306.004,-23.5835,-305.401	1/2:87:0,26,61:0:0:26,61:912,2165:-250.298,-176.752,-168.926,-73.8954,0,-55.5326	1/1:317:0,314,1:0:0:314,1:11024,36:-988.335,-94.5234,0,-985.397,-91.5676,-985.096	1/2:212:0,107,104:0:0:107,104:3777,3702:-608.626,-301.724,-269.514,-306.907,0,-275.6	1/1:22:0,22,0:0:0:22,0:788,0:-71.1466,-6.62266,0,-71.1466,-6.62266,-71.1466	1/1:320:0,318,0:0:0:318,0:11250,0:-1011.22,-95.7275,0,-1011.22,-95.7275,-1011.22	1/2:162:0,66,96:0:0:66,96:2297,3428:-465.274,-279.836,-259.968,-185.788,0,-156.889	1/2:96:0,37,59:0:0:37,59:1288,2120:-277.606,-173.308,-162.17,-104.649,0,-86.8887	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:10:0,2,8:0:0:2,8:72,258:-26.9978,-21.1247,-20.5227,-6.22497,0,-3.81673	2/2:3:0,0,3:0:0:0,3:0,93:-8.67673,-8.67673,-8.67673,-0.90309,-0.90309,0	1/2:8:0,3,5:0:0:3,5:108,180:-23.8344,-15.0469,-14.1438,-9.14675,0,-7.6416	1/1:3:0,3,0:0:0:3,0:104,0:-9.68253,-0.90309,0,-9.68253,-0.90309,-9.68253	1/2:171:0,79,90:0:0:79,90:2787,3208:-488.012,-261.504,-237.723,-226.516,0,-199.424	1/2:230:0,112,118:0:0:112,118:3978,4206:-666.191,-343.194,-309.478,-323.352,0,-287.831	1/1:33:0,33,0:0:0:33,0:1161,0:-103.132,-9.93399,0,-103.132,-9.93399,-103.132	1/1:2:0,2,0:0:0:2,0:72,0:-6.82703,-0.60206,0,-6.82703,-0.60206,-6.82703	1/1:132:0,129,2:0:0:129,2:4551,57:-407.802,-38.8329,0,-403.276,-34.3469,-402.674	1/2:26:0,12,14:0:0:12,14:412,504:-74.8134,-41.4837,-37.8713,-33.68,0,-29.4656	1/2:207:0,102,102:0:0:102,102:3592,3672:-591.351,-299.621,-268.916,-291.731,0,-261.026	1/2:72:0,38,33:0:0:38,33:1360,1184:-207.392,-96.5745,-85.1354,-110.816,0,-100.882	1/2:55:0,22,32:0:0:22,32:781,1148:-157.123,-93.6395,-87.0168,-63.4827,0,-53.8497	1/1:100:0,99,0:0:0:99,0:3520,0:-316.255,-29.802,0,-316.255,-29.802,-316.255	1/1:175:0,174,0:0:0:174,0:6146,0:-550.367,-52.3792,0,-550.367,-52.3792,-550.367	1/2:270:0,127,139:0:0:127,139:4456,4946:-764.591,-403.136,-364.905,-361.496,0,-319.653	1/2:109:0,54,55:0:0:54,55:1895,1956:-313.622,-159.759,-143.503,-154.216,0,-137.659	1/1:134:0,132,0:0:0:132,0:4655,0:-417.702,-39.736,0,-417.702,-39.736,-417.702	1/2:160:0,59,100:0:0:59,100:2086,3562:-460.066,-290.362,-272.602,-169.737,0,-139.634	1/2:16:0,6,10:0:0:6,10:216,345:-45.9843,-28.3705,-26.5643,-17.9678,0,-14.9575	1/2:93:0,45,47:0:0:45,47:1603,1654:-264.702,-134.636,-121.089,-130.06,0,-115.911	1/2:33:0,10,23:0:0:10,23:360,828:-97.2855,-67.9204,-64.9101,-29.7248,0,-22.8012	1/2:19:0,8,11:0:0:8,11:268,383:-53.1322,-31.4911,-29.0829,-21.9811,0,-18.6697	1/1:117:0,117,0:0:0:117,0:4125,0:-370.556,-35.2205,0,-370.556,-35.2205,-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chr04	31974865	.	C	T	133961	PASS	AB=0.442474;ABP=132.673;AC=138;AF=0.734043;AN=188;AO=6445;CIGAR=1X;DP=8991;DPB=8991;DPRA=39.0696;EPP=13954.8;EPPR=5525.06;GTI=1;LEN=1;MEANALT=1.03261;MQM=54.1116;MQMR=59.9552;NS=94;NUMALT=1;ODDS=1.81392;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=230500;QR=90645;RO=2543;RPL=6440;RPP=13954.8;RPPR=5525.06;RPR=5;RUN=1;SAF=0;SAP=13998.1;SAR=6445;SRF=0;SRP=5525.06;SRR=2543;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:17,20:17:612:20:720:-53.8269,0,-44.2753	1/1:129:3,126:3:108:126:4524:-395.065,-28.7577,0	1/1:121:0,121:0:0:121:4344:-389.614,-36.4246,0	1/1:187:0,187:0:0:187:6689:-599.535,-56.2926,0	0/1:83:42,41:42:1488:41:1468:-106.583,0,-109.229	0/1:66:45,21:45:1586:21:748:-47.5875,0,-123.158	0/1:98:56,42:56:2001:42:1492:-104.928,0,-150.861	1/1:174:0,174:0:0:174:6240:-557.452,-52.3792,0	1/1:71:0,71:0:0:71:2540:-227.741,-21.3731,0	1/1:126:0,126:0:0:126:4509:-405.293,-37.9298,0	0/1:41:18,23:18:633:23:828:-62.4479,0,-44.1722	0/1:70:32,38:32:1152:38:1368:-102.033,0,-82.918	1/1:59:0,59:0:0:59:2124:-190.354,-17.7608,0	1/1:55:0,55:0:0:55:1976:-177.153,-16.5567,0	1/1:40:0,40:0:0:40:1440:-129.583,-12.0412,0	0/1:48:20,28:20:716:28:1008:-76.4578,0,-50.3183	0/1:66:31,35:31:1112:35:1241:-91.4818,0,-80.5234	1/1:46:0,46:0:0:46:1643:-147.199,-13.8474,0	0/1:25:5,20:5:180:20:716:-57.0831,0,-9.02631	0/1:170:106,63:106:3778:63:2249:-150.741,0,-288.983	0/1:156:88,68:88:3118:68:2421:-169.861,0,-233.885	0/1:183:141,42:141:5005:42:1508:-80.8044,0,-394.063	1/1:86:0,86:0:0:86:3087:-277.177,-25.8886,0	1/1:101:3,98:3:108:98:3516:-305.693,-20.3289,0	0/1:85:62,23:62:2190:23:813:-47.2947,0,-171.775	1/1:312:1,311:1:36:311:11095:-990.231,-90.3231,0	0/1:213:105,108:105:3742:108:3853:-281.99,0,-272.859	1/1:22:0,22:0:0:22:792:-71.5041,-6.62266,0	1/1:316:0,316:0:0:316:11248:-1011.17,-95.1255,0	0/1:163:97,66:97:3464:66:2356:-161.712,0,-262.905	0/1:94:58,36:58:2076:36:1288:-87.4646,0,-158.814	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:10:8,2:8:276:2:72:-3.81673,0,-22.1649	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:5,3:5:180:3:108:-7.6416,0,-14.1438	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	0/1:167:88,79:88:3145:79:2831:-204.222,0,-233.002	0/1:231:117,114:117:4155:114:4096:-297.578,0,-304.593	1/1:33:1,32:1:36:32:1148:-98.08,-6.33572,0	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	1/1:132:2,130:2:72:130:4645:-409.465,-32.8992,0	0/1:25:13,12:13:468:12:428:-31.1471,0,-34.9339	0/1:207:106,101:106:3797:101:3609:-261.853,0,-279.613	0/1:74:36,38:36:1292:38:1360:-100.338,0,-94.3075	0/1:59:36,23:36:1257:23:824:-56.5299,0,-95.6667	1/1:100:0,100:0:0:100:3591:-322.927,-30.103,0	1/1:176:0,176:0:0:176:6281:-562.592,-52.9813,0	0/1:270:142,128:142:5024:128:4562:-327.542,0,-371.027	0/1:111:58,53:58:2088:53:1881:-135.579,0,-154.775	1/1:132:0,132:0:0:132:4717:-423.179,-39.736,0	0/1:160:100,60:100:3569:60:2147:-145.151,0,-273.145	0/1:16:10,6:10:360:6:216:-14.9575,0,-27.9278	0/1:92:48,44:48:1713:44:1580:-114.158,0,-126.757	0/1:33:23,10:23:828:10:360:-22.8012,0,-64.9101	0/1:19:11,8:11:396:8:273:-19.1167,0,-30.2632	1/1:114:0,114:0:0:114:4068:-365.363,-34.3174,0	1/1:47:0,47:0:0:47:1692:-152.163,-14.1484,0	1/1:10:0,10:0:0:10:356:-32.3398,-3.0103,0	0/1:13:10,3:10:345:3:108:-6.15748,0,-27.4674	0/1:39:23,16:23:820:16:561:-38.8818,0,-62.3823	1/1:72:1,71:1:32:71:2540:-224.842,-18.4748,0	1/1:3:0,3:0:0:3:108:-9.98112,-0.90309,0	1/1:288:1,287:1:36:287:10239:-916.875,-83.0984,0	0/1:196:122,73:122:4388:73:2586:-173.203,0,-336.02	1/1:91:6,85:6:216:85:3052:-253.347,-7.60322,0	1/1:96:0,96:0:0:96:3425:-307.932,-28.8989,0	1/1:155:1,154:1:36:154:5486:-489.45,-43.0614,0	1/1:70:2,68:2:72:68:2444:-212.912,-14.2354,0	1/1:13:0,13:0:0:13:464:-41.7847,-3.91339,0	1/1:55:0,55:0:0:55:1957:-175.9,-16.5567,0	0/1:93:42,51:42:1508:51:1836:-137.307,0,-108.019	0/1:14:9,5:9:324:5:180:-11.8255,0,-25.2914	0/1:109:49,60:49:1748:60:2137:-157.104,0,-124.792	1/1:50:0,50:0:0:50:1773:-159.46,-15.0515,0	1/1:95:0,95:0:0:95:3393:-303.762,-28.5979,0	0/1:181:88,93:88:3156:93:3328:-244.46,0,-229.778	0/1:126:74,52:74:2622:52:1864:-128.844,0,-198.295	1/1:116:0,116:0:0:116:4164:-372.3,-34.9195,0	0/1:16:11,5:11:396:5:180:-11.694,0,-31.1663	0/1:118:59,58:59:2101:58:2084:-151.603,0,-153.777	0/1:128:72,56:72:2569:56:2016:-140.784,0,-192.926	1/1:256:5,251:5:180:251:8969:-788.767,-60.5116,0	1/1:85:0,85:0:0:85:3038:-273.15,-25.5876,0	1/1:54:0,54:0:0:54:1936:-174.273,-16.2556,0	0/1:99:56,43:56:2004:43:1544:-109.182,0,-150.832	0/1:195:114,81:114:4073:81:2908:-202.661,0,-308.055	1/1:40:0,40:0:0:40:1428:-127.582,-12.0412,0	1/1:60:0,60:0:0:60:2152:-193.048,-18.0618,0	1/1:60:0,60:0:0:60:2160:-193.979,-18.0618,0	1/1:24:0,24:0:0:24:860:-77.6103,-7.22472,0	0/1:44:20,24:20:697:24:864:-64.6991,0,-49.8053	0/1:60:39,21:39:1381:21:756:-50.2561,0,-106.525	1/1:118:0,118:0:0:118:4215:-378.661,-35.5215,0	1/1:80:0,80:0:0:80:2876:-258.719,-24.0824,0
chr04	31974971	.	T	C	45951.7	PASS	AB=0.54206;ABP=79.5463;AC=49;AF=0.260638;AN=188;AO=2720;CIGAR=1X;DP=9364;DPB=9364;DPRA=1.2548;EPP=5900.73;EPPR=14408.6;GTI=1;LEN=1;MEANALT=1.03448;MQM=59.9945;MQMR=59.9955;NS=94;NUMALT=1;ODDS=0.275173;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96194;QR=237777;RO=6642;RPL=2719;RPP=5900.73;RPPR=14408.6;RPR=1;RUN=1;SAF=2720;SAP=5909.42;SAR=0;SRF=6642;SRP=14425.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:99:41,58:41:1472:58:2045:-154.518,0,-102.974	0/0:65:65,0:65:2319:0:0:0,-19.5669,-208.97	0/0:184:184,0:184:6580:0:0:0,-55.3895,-592.279	0/0:188:188,0:188:6728:0:0:0,-56.5936,-605.592	0/1:117:60,57:60:2138:57:2018:-146.671,0,-157.466	0/1:12:2,10:2:72:10:332:-26.5878,0,-3.22436	0/1:69:38,31:38:1364:31:1104:-78.8996,0,-102.29	0/0:146:146,0:146:5223:0:0:0,-43.9504,-470.208	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.49	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/1:26:17,9:17:612:9:324:-21.6791,0,-47.5867	0/1:106:47,59:47:1688:59:2056:-153.4,0,-120.298	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:58:30,28:30:1071:28:1008:-73.5766,0,-79.2419	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3601	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:21:8,13:8:279:13:464:-35.7759,0,-19.1259	0/1:209:106,103:106:3812:103:3641:-264.982,0,-280.361	0/1:254:144,109:144:5131:109:3864:-271.436,0,-385.411	0/1:203:55,148:55:1980:148:5182:-405.414,0,-117.365	0/0:61:60,1:60:2156:1:32:0,-15.1635,-191.108	0/0:81:77,4:77:2732:4:144:0,-11.0698,-232.808	0/1:147:68,79:68:2448:79:2786:-206.725,0,-176.323	0/0:176:176,0:176:6281:0:0:0,-52.9813,-565.382	0/1:312:142,170:142:5085:170:5993:-445.552,0,-363.87	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:378:377,1:377:13515:1:36:0,-110.191,-1212.53	0/1:101:35,66:35:1256:66:2351:-181.444,0,-82.9413	0/1:100:41,59:41:1464:59:2098:-158.985,0,-101.953	0/1:13:9,4:9:324:4:129:-8.01427,0,-25.5925	0/1:31:12,19:12:432:19:680:-52.1972,0,-29.8893	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:11:3,8:3:104:8:288:-22.9561,0,-6.39148	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/1:153:70,83:70:2507:83:2937:-218.505,0,-179.824	0/1:125:53,72:53:1895:72:2567:-193.651,0,-133.199	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:109:105,4:105:3764:4:144:0,-19.4987,-325.645	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:242:117,125:117:4204:125:4443:-327.192,0,-305.69	0/1:58:28,30:28:984:30:1062:-78.4302,0,-71.4137	0/1:55:19,36:19:680:36:1258:-96.9641,0,-44.9725	0/0:187:187,0:187:6691:0:0:0,-56.2926,-602.266	0/0:136:134,2:134:4795:2:72:0,-34.1034,-424.869	0/1:230:113,117:113:4046:117:4105:-300.401,0,-295.089	0/1:142:64,78:64:2276:78:2788:-208.415,0,-161.727	0/0:130:130,0:130:4648:0:0:0,-39.1339,-418.48	0/1:196:73,123:73:2628:123:4354:-333.035,0,-177.765	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:156:69,87:69:2480:87:3093:-231.636,0,-176.492	0/1:45:16,29:16:572:29:1036:-80.0076,0,-38.2671	0/1:13:3,10:3:108:10:352:-28.1048,0,-6.16178	0/0:138:137,1:137:4911:1:36:0,-37.9439,-438.541	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:19:7,12:7:252:12:417:-32.1406,0,-17.3094	0/1:82:37,45:37:1323:45:1584:-118.163,0,-94.6869	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:235:235,0:235:8456:0:0:0,-70.742,-761.036	0/1:198:90,108:90:3212:108:3817:-284.122,0,-229.697	0/1:37:33,4:33:1184:4:144:-2.17551,0,-95.7302	0/0:85:84,1:84:2999:1:36:0,-21.9893,-266.543	0/0:198:196,2:196:6989:2:72:0,-52.7672,-622.236	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/1:51:27,24:27:972:24:809:-57.765,0,-72.4454	0/1:31:18,13:18:648:13:460:-32.4034,0,-49.32	0/1:152:71,81:71:2543:81:2866:-212.419,0,-183.363	0/0:98:94,4:94:3380:4:144:0,-16.1873,-291.101	0/0:169:169,0:169:6041:0:0:0,-50.8741,-543.793	0/1:227:103,124:103:3679:124:4407:-328.469,0,-262.979	0/1:121:61,60:61:2188:60:2147:-157.072,0,-160.761	0/0:96:96,0:96:3443:0:0:0,-28.8989,-310.082	0/1:25:9,16:9:324:16:572:-44.2877,0,-21.9801	0/1:144:68,76:68:2444:76:2689:-198.904,0,-176.866	0/1:154:62,92:62:2232:92:3272:-248.34,0,-154.785	0/0:260:260,0:260:9331:0:0:0,-78.2678,-839.751	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/1:58:41,17:41:1476:17:603:-37.1398,0,-115.676	0/1:121:58,63:58:2080:63:2224:-163.998,0,-151.046	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:104:52,52:52:1855:52:1809:-131.78,0,-135.922	0/1:94:35,58:35:1244:58:2044:-156.023,0,-84.0567	0/0:105:105,0:105:3740:0:0:0,-31.6081,-336.8	0/0:101:101,0:101:3589:0:0:0,-30.404,-323.215
chr04	31975035	.	A	G	121574	PASS	AB=0.472199;ABP=27.0373;AC=138;AF=0.741935;AN=186;AO=5757;CIGAR=1X;DP=7666;DPB=7666;DPRA=0;EPP=12504.2;EPPR=4139.67;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.9766;MQMR=59.9412;NS=93;NUMALT=1;ODDS=2.61992;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205790;QR=68113;RO=1905;RPL=5757;RPP=12504.2;RPPR=4139.67;RPR=0;RUN=1;SAF=0;SAP=12504.2;SAR=5757;SRF=0;SRP=4139.67;SRR=1905;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:106:0,106:0:0:106:3800:-342.197,-31.9092,0	1/1:81:0,80:0:0:80:2860:-257.436,-24.0824,0	1/1:129:0,128:0:0:128:4564:-410.568,-38.5318,0	0/1:47:22,25:22:777:25:891:-66.3604,0,-56.102	0/1:31:22,9:22:792:9:324:-20.1739,0,-62.2737	0/1:89:34,55:34:1220:55:1957:-149.612,0,-83.3151	1/1:215:1,214:1:36:214:7618:-682.061,-61.1232,0	1/1:27:0,27:0:0:27:942:-85.0898,-8.12781,0	1/1:126:0,126:0:0:126:4503:-405.439,-37.9298,0	0/1:56:22,34:22:784:34:1216:-92.8889,0,-54.0262	0/1:45:25,20:25:900:20:716:-51.2214,0,-67.7747	1/1:62:0,62:0:0:62:2213:-199.434,-18.6639,0	1/1:94:0,94:0:0:94:3367:-303.245,-28.2968,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:61:32,29:32:1148:29:1044:-75.912,0,-85.267	0/1:86:45,41:45:1612:41:1472:-106.885,0,-119.481	1/1:70:0,70:0:0:70:2500:-225.235,-21.0721,0	0/1:32:19,13:19:680:13:468:-32.8267,0,-51.8962	0/1:226:131,94:131:4673:94:3356:-234.166,0,-352.64	0/1:38:19,19:19:662:19:672:-49.3677,0,-48.4633	0/1:106:76,30:76:2720:30:1068:-64.5229,0,-213.134	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:84:5,79:5:180:79:2840:-239.18,-8.73446,0	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	1/1:410:0,410:0:0:410:14682:-1321.11,-123.422,0	0/1:73:41,32:41:1467:32:1144:-81.2943,0,-110.35	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:203:0,203:0:0:203:7267:-654.081,-61.1091,0	0/1:129:70,59:70:2488:59:2104:-150.797,0,-185.341	0/1:66:26,40:26:932:40:1432:-109.31,0,-64.3309	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	.:.:.:.:.:.:.:.	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:180:97,83:97:3457:83:2967:-213.077,0,-256.785	0/1:172:96,76:96:3428:76:2708:-192.188,0,-256.957	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:117:4,113:4:144:113:4043:-350.744,-21.9069,0	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	0/1:94:47,47:47:1688:47:1688:-123.91,0,-123.91	0/1:73:30,43:30:1068:43:1532:-116.198,0,-74.2291	0/1:57:29,28:29:1036:28:996:-72.7962,0,-76.3952	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:109:0,108:0:0:108:3814:-343.1,-32.5112,0	0/1:150:69,81:69:2472:81:2895:-215.63,0,-177.579	0/1:82:42,40:42:1512:40:1440:-105.213,0,-111.69	1/1:181:0,181:0:0:181:6483:-583.554,-54.4864,0	0/1:155:72,83:72:2561:83:2972:-221.053,0,-184.079	0/1:20:15,5:15:536:5:176:-10.1644,0,-42.5542	0/1:115:52,63:52:1864:63:2260:-169.044,0,-133.335	0/1:48:26,22:26:936:22:784:-56.4345,0,-70.11	0/1:14:4,10:4:144:10:352:-27.8038,0,-9.0992	1/1:119:0,119:0:0:119:4248:-382.5,-35.8226,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/1:60:26,34:26:936:34:1216:-91.6848,0,-66.4977	1/1:127:1,126:1:36:126:4507:-402.195,-34.6325,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:180:0,180:0:0:180:6444:-579.895,-54.1854,0	0/1:207:146,61:146:5252:61:2188:-134.872,0,-410.501	1/1:101:6,95:6:212:95:3393:-286.158,-10.9792,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:114:0,114:0:0:114:4075:-366.93,-34.3174,0	1/1:122:0,122:0:0:122:4343:-391.048,-36.7257,0	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	1/1:67:0,67:0:0:67:2392:-215.167,-20.169,0	0/1:97:49,48:49:1747:48:1715:-125.435,0,-128.314	0/1:28:11,17:11:392:17:608:-46.6232,0,-27.1912	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	1/1:39:0,39:0:0:39:1379:-124.408,-11.7402,0	0/1:111:52,59:52:1856:59:2105:-156.305,0,-133.905	0/1:118:69,49:69:2465:49:1755:-122.713,0,-186.581	1/1:133:0,133:0:0:133:4784:-430.714,-40.037,0	0/1:12:7,5:7:248:5:180:-12.9397,0,-17.4914	0/1:112:60,52:60:2148:52:1859:-133.874,0,-159.872	0/1:101:46,55:46:1621:55:1946:-145.011,0,-115.773	1/1:142:0,142:0:0:142:5060:-455.545,-42.7463,0	1/1:103:0,103:0:0:103:3691:-332.391,-31.0061,0	1/1:63:0,63:0:0:63:2247:-202.493,-18.9649,0	0/1:78:34,44:34:1224:44:1576:-118.651,0,-86.9867	0/1:132:69,63:69:2472:63:2260:-163.927,0,-182.998	1/1:38:0,38:0:0:38:1368:-123.42,-11.4391,0	1/1:64:0,64:0:0:64:2287:-206.091,-19.2659,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	0/1:94:51,43:51:1823:43:1535:-110.146,0,-136.054	0/1:46:34,12:34:1212:12:428:-25.0114,0,-95.5389	1/1:63:0,63:0:0:63:2248:-202.584,-18.9649,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0
chr04	31976157	.	TCACA	TCGCA,TCGTG	106904	PASS	AB=0.432099,0.561529;ABP=103.568,85.5807;AC=138,48;AF=0.741935,0.258065;AN=186;AO=3678,1421;CIGAR=2M1X2M,2M3X;DP=5125;DPB=5125.4;DPRA=18.558,0.996955;EPP=7989.69,3088.67;EPPR=9.52472;GTI=1;LEN=1,3;MEANALT=1.81522,2.27778;MQM=59.9913,59.9317;MQMR=60;NS=93;NUMALT=2;ODDS=0.096376;PAIRED=0,0;PAIREDR=0;PAO=0.666667,0.666667;PQA=24,24;PQR=24;PRO=0.666667;QA=129809,49401;QR=104;RO=3;RPL=0,0;RPP=7989.69,3088.67;RPPR=9.52472;RPR=3678,1421;RUN=1,1;SAF=0,0;SAP=7989.69,3088.67;SAR=3678,1421;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:14:0,9,5:0:0:9,5:320,178:-40.9409,-14.8635,-12.1542,-26.4331,0,-24.9279	1/1:65:0,63,2:0:0:63,2:2229,72:-200.505,-18.9649,0,-194.63,-12.7302,-194.028	1/1:51:0,50,1:0:0:50,1:1752,36:-157.601,-15.0515,0,-154.664,-11.7543,-154.363	1/1:224:0,221,0:0:0:221,0:7833,0:-704.691,-66.5276,0,-704.691,-66.5276,-704.691	1/2:39:0,17,22:0:0:17,22:604,768:-112.037,-62.8161,-57.6985,-49.5731,0,-42.9504	1/2:56:0,33,23:0:0:33,23:1157,757:-155.674,-61.5106,-51.5766,-94.5008,0,-87.5771	1/2:74:0,36,38:0:0:36,38:1274,1326:-211.972,-108.199,-97.3615,-104.125,0,-92.6858	1/1:41:0,41,0:0:0:41,0:1450,0:-130.794,-12.3422,0,-130.794,-12.3422,-130.794	1/1:55:0,54,0:0:0:54,0:1899,0:-170.825,-16.2556,0,-170.825,-16.2556,-170.825	1/1:52:0,52,0:0:0:52,0:1830,0:-164.978,-15.6536,0,-164.978,-15.6536,-164.978	1/2:20:0,7,13:0:0:7,13:237,450:-56.1264,-36.9156,-34.8084,-19.5518,0,-15.6385	1/2:48:0,20,28:0:0:20,28:716,995:-139.827,-81.4365,-75.4159,-58.7471,0,-50.3183	1/1:31:0,31,0:0:0:31,0:1079,0:-97.4149,-9.33193,0,-97.4149,-9.33193,-97.4149	1/1:33:0,33,0:0:0:33,0:1176,0:-106.148,-9.93399,0,-106.148,-9.93399,-106.148	1/1:56:0,55,1:0:0:55,1:1939,36:-174.426,-16.5567,0,-171.489,-13.2594,-171.188	1/2:32:0,20,12:0:0:20,12:716,414:-92.3751,-33.9777,-27.9571,-58.7471,0,-55.1348	1/2:45:0,17,28:0:0:17,28:612,951:-127.321,-77.3771,-72.2595,-50.2959,0,-41.8671	1/1:38:0,38,0:0:0:38,0:1347,0:-121.529,-11.4391,0,-121.529,-11.4391,-121.529	1/2:22:0,15,7:0:0:15,7:536,250:-64.4418,-20.7395,-16.224,-44.0594,0,-41.9522	1/2:77:0,30,46:0:0:30,46:1067,1632:-219.966,-133.01,-123.979,-86.9989,0,-73.1515	1/2:68:0,34,34:0:0:34,34:1212,1184:-195.427,-96.628,-86.393,-99.1513,0,-88.9163	1/2:72:0,19,52:0:0:19,52:684,1810:-202.925,-147.111,-141.391,-55.758,0,-40.1044	1/1:41:1,40,0:1:36:40,0:1417,0:-124.229,-8.74396,0,-124.53,-12.0412,-127.467	1/1:74:0,74,0:0:0:74,0:2610,0:-235.146,-22.2762,0,-235.146,-22.2762,-235.146	1/2:51:0,22,29:0:0:22,29:777,998:-144.677,-81.398,-74.7753,-63.6277,0,-54.8978	1/1:194:0,194,0:0:0:194,0:6898,0:-620.888,-58.3998,0,-620.888,-58.3998,-620.888	1/2:116:0,61,55:0:0:61,55:2113,1911:-327.431,-155.707,-137.344,-172.071,0,-155.514	1/1:20:0,20,0:0:0:20,0:687,0:-62.1493,-6.0206,0,-62.1493,-6.0206,-62.1493	1/1:125:0,125,0:0:0:125,0:4464,0:-401.929,-37.6288,0,-401.929,-37.6288,-401.929	1/2:77:0,41,36:0:0:41,36:1459,1256:-221.415,-102.504,-90.1617,-119.263,0,-108.426	1/2:89:0,28,61:0:0:28,61:1000,2074:-250.098,-168.563,-160.134,-81.8865,0,-63.5237	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:14:0,9,5:0:0:9,5:324,169:-40.4878,-14.0369,-11.3276,-26.7966,0,-25.2914	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:15:0,11,4:0:0:11,4:392,142:-43.8786,-11.9251,-8.61376,-32.3087,0,-31.1046	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:125:0,62,63:0:0:62,63:2177,2192:-355.759,-178.578,-159.914,-177.531,0,-158.566	1/2:132:0,49,82:0:0:49,82:1688,2870:-370.698,-233.592,-218.842,-137.19,0,-112.506	1/1:33:0,33,0:0:0:33,0:1125,0:-101.55,-9.93399,0,-101.55,-9.93399,-101.55	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:84:0,83,1:0:0:83,1:2911,36:-261.862,-24.9855,0,-258.924,-21.6882,-258.623	1/2:24:0,8,16:0:0:8,16:269,573:-68.8719,-47.0874,-44.6792,-22.1279,0,-17.3114	1/2:42:0,20,22:0:0:20,22:712,722:-116.706,-58.6623,-52.6417,-58.3861,0,-51.7634	1/2:41:0,19,22:0:0:19,22:675,762:-117.251,-62.245,-56.5254,-55.3574,0,-48.7347	1/2:32:0,13,19:0:0:13,19:455,665:-91.4727,-54.454,-50.5406,-37.3686,0,-31.649	1/1:63:0,61,1:0:0:61,1:2125,36:-191.166,-18.3628,0,-188.228,-15.4154,-187.927	1/1:80:0,80,0:0:0:80,0:2781,0:-250.527,-24.0824,0,-250.527,-24.0824,-250.527	1/2:90:0,25,65:0:0:25,65:887,2255:-255.916,-183.646,-176.12,-72.6224,0,-53.0554	1/2:74:0,26,46:0:0:26,46:921,1602:-205.383,-130.355,-122.529,-75.1117,0,-61.2643	1/1:94:0,94,0:0:0:94,0:3345,0:-301.264,-28.2968,0,-301.264,-28.2968,-301.264	1/2:77:0,47,30:0:0:47,30:1659,1063:-221.915,-86.9505,-72.8021,-135.318,0,-126.287	2/2:3:0,0,3:0:0:0,3:0,98:-9.14329,-9.14329,-9.14329,-0.90309,-0.90309,0	1/2:69:0,32,37:0:0:32,37:1135,1301:-198.723,-106.251,-96.6185,-92.8251,0,-81.687	1/2:30:0,11,19:0:0:11,19:387,648:-84.4251,-52.9182,-49.6069,-31.8546,0,-26.135	1/2:8:0,6,2:0:0:6,2:212,68:-23.1311,-5.85565,-4.04947,-17.6186,0,-17.0166	1/1:44:0,43,1:0:0:43,1:1534,36:-137.993,-12.9443,0,-135.056,-9.64705,-134.755	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854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chr04	31982560	.	G	T	26302.1	PASS	AB=0.499064;ABP=3.0347;AC=47;AF=0.25;AN=188;AO=1607;CIGAR=1X;DP=6323;DPB=6323;DPRA=1.01159;EPP=3492.57;EPPR=10235;GTI=0;LEN=1;MEANALT=1.01887;MQM=59.9104;MQMR=59.9703;NS=94;NUMALT=1;ODDS=6.36036;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56899;QR=166553;RO=4712;RPL=1607;RPP=3492.57;RPPR=10235;RPR=0;RUN=1;SAF=1607;SAP=3492.57;SAR=0;SRF=4712;SRP=10235;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:20,26:20:707:26:923:-69.5394,0,-50.1072	0/0:25:25,0:25:879:0:0:0,-7.52575,-79.4268	0/0:64:64,0:64:2275:0:0:0,-19.2659,-205.012	0/0:96:96,0:96:3385:0:0:0,-28.8989,-304.855	0/1:27:8,19:8:284:19:668:-52.3162,0,-17.7755	0/1:33:19,14:19:680:14:492:-34.6784,0,-51.5952	0/1:89:32,57:32:1148:57:2010:-154.381,0,-76.8382	0/0:75:75,0:75:2653:0:0:0,-22.5772,-239.011	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:58:58,0:58:2035:0:0:0,-17.4597,-183.42	0/1:89:55,34:55:1944:34:1208:-82.2344,0,-148.445	0/1:101:55,46:55:1947:46:1629:-116.421,0,-145.101	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.873	0/0:95:94,0:94:3297:0:0:0,-28.2968,-296.579	0/0:72:72,0:72:2544:0:0:0,-21.6742,-229.21	0/1:135:65,70:65:2269:70:2458:-180.834,0,-163.831	0/1:30:15,15:15:531:15:532:-39.1822,0,-39.091	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.776	0/1:56:23,33:23:824:33:1180:-89.6504,0,-57.6256	0/1:90:46,44:46:1629:44:1567:-114.228,0,-119.804	0/1:120:52,68:52:1864:68:2419:-181.842,0,-131.916	0/1:64:27,37:27:957:37:1293:-97.4003,0,-67.1779	0/0:99:99,0:99:3491:0:0:0,-29.802,-314.399	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:80:40,40:40:1408:40:1413:-103.364,0,-102.887	0/0:102:102,0:102:3601:0:0:0,-30.7051,-323.868	0/1:178:107,71:107:3793:71:2535:-174.817,0,-287.984	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:128:128,0:128:4542:0:0:0,-38.5318,-408.947	0/1:66:36,30:36:1279:30:1067:-76.4475,0,-95.5445	0/1:71:39,32:39:1375:32:1082:-76.3048,0,-102.675	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:21:11,10:11:392:10:348:-25.3335,0,-29.2984	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/1:184:94,90:94:3314:90:3176:-230.674,0,-243.089	0/1:76:34,42:34:1216:42:1492:-111.696,0,-86.8683	0/0:78:78,0:78:2723:0:0:0,-23.4803,-245.308	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:67:65,2:65:2314:2:72:0,-13.3323,-201.683	0/1:58:29,29:29:1012:29:1032:-75.7256,0,-73.9288	0/1:125:56,69:56:1973:69:2471:-185.014,0,-140.214	0/1:73:39,34:39:1384:34:1204:-86.6907,0,-102.884	0/1:50:23,27:23:811:27:955:-71.2134,0,-58.2585	0/0:87:87,0:87:3094:0:0:0,-26.1896,-278.688	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.759	0/1:89:53,36:53:1876:36:1292:-89.7921,0,-142.327	0/1:39:22,17:22:773:17:597:-42.316,0,-58.1493	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:104:49,55:49:1743:55:1976:-146.808,0,-125.847	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/1:60:36,24:36:1275:24:856:-59.2993,0,-96.9905	0/1:58:29,29:29:1036:29:1035:-76.0033,0,-76.0942	0/1:15:9,6:9:324:6:201:-13.9016,0,-24.9904	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:49:49,0:49:1725:0:0:0,-14.7505,-155.533	0/0:16:15,0:15:540:0:0:0,-4.51545,-48.5767	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:72:36,36:36:1264:36:1269:-92.8364,0,-92.3856	0/0:87:85,2:85:2976:2:72:0,-19.3529,-261.235	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:90:90,0:90:3186:0:0:0,-27.0927,-286.965	0/1:52:27,25:27:957:25:885:-64.313,0,-70.7903	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.169	0/0:24:24,0:24:842:0:0:0,-7.22472,-76.0971	0/0:53:52,1:52:1834:1:32:0,-12.7553,-162.14	0/0:142:142,0:142:5034:0:0:0,-42.7463,-453.185	0/0:81:81,0:81:2865:0:0:0,-24.3834,-258.086	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/1:48:19,29:19:671:29:1032:-78.744,0,-46.2664	0/1:20:11,9:11:383:9:305:-21.7566,0,-28.7826	0/1:96:42,54:42:1478:54:1927:-144.742,0,-104.414	0/0:74:74,0:74:2617:0:0:0,-22.2762,-235.778	0/0:135:135,0:135:4796:0:0:0,-40.639,-431.797	0/1:61:36,25:36:1296:25:892:-62.2307,0,-98.5811	0/1:51:26,25:26:908:25:889:-64.9673,0,-66.68	0/0:59:58,1:58:2030:1:36:0,-14.1625,-179.371	0/1:23:12,11:12:428:11:392:-28.6964,0,-31.9351	0/1:18:13,5:13:453:5:172:-10.3994,0,-35.6811	0/1:55:19,36:19:684:36:1278:-98.7654,0,-45.3337	0/0:92:91,1:91:3232:1:36:0,-24.0965,-287.503	0/0:59:59,0:59:2040:0:0:0,-17.7608,-183.868	0/0:93:93,0:93:3260:0:0:0,-27.9958,-293.621	0/1:51:27,24:27:952:24:864:-62.7291,0,-70.6427	0/1:115:65,50:65:2295:50:1759:-123.972,0,-172.193	0/0:21:20,1:20:695:1:36:0,-2.72335,-59.2731	0/0:81:81,0:81:2822:0:0:0,-24.3834,-254.22	0/0:97:97,0:97:3405:0:0:0,-29.1999,-306.666	0/0:104:104,0:104:3663:0:0:0,-31.3071,-329.876	0/1:194:93,99:93:3261:99:3478:-255.083,0,-235.555	0/1:87:34,53:34:1206:53:1866:-142.028,0,-82.6549	0/0:76:76,0:76:2687:0:0:0,-22.8783,-242.073	0/0:106:106,0:106:3744:0:0:0,-31.9092,-337.162
chr04	31987622	.	T	C	113769	PASS	AB=0.479054;ABP=16.3826;AC=141;AF=0.75;AN=188;AO=5625;CIGAR=1X;DP=7469;DPB=7469;DPRA=0;EPP=12217.5;EPPR=4002.86;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.867;MQMR=59.9582;NS=94;NUMALT=1;ODDS=1.92623;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195501;QR=65434;RO=1842;RPL=5625;RPP=12217.5;RPPR=4002.86;RPR=0;RUN=1;SAF=5625;SAP=12217.5;SAR=0;SRF=1842;SRP=4002.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:18,11:18:632:11:383:-26.0734,0,-48.4769	1/1:102:0,102:0:0:102:3573:-321.687,-30.7051,0	1/1:88:0,88:0:0:88:3069:-276.441,-26.4906,0	1/1:279:4,275:4:144:275:9544:-845.615,-70.6738,0	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:20:6,14:6:216:14:492:-38.5911,0,-13.7699	0/1:83:33,50:33:1188:50:1731:-131.083,0,-82.2431	1/1:74:0,74:0:0:74:2610:-235.147,-22.2762,0	1/1:80:0,80:0:0:80:2767:-249.265,-24.0824,0	1/1:97:0,97:0:0:97:3377:-304.142,-29.1999,0	0/1:42:19,23:19:675:23:812:-60.7577,0,-48.4337	0/1:53:24,29:24:846:29:1020:-76.1529,0,-60.5032	1/1:76:0,76:0:0:76:2668:-240.23,-22.8783,0	1/1:64:0,64:0:0:64:2195:-197.81,-19.2659,0	1/1:49:0,49:0:0:49:1679:-151.392,-14.7505,0	0/1:61:29,32:29:1018:32:1108:-81.6611,0,-73.5676	0/1:19:9,10:9:320:10:347:-25.844,0,-23.4228	1/1:23:0,23:0:0:23:797:-72.0367,-6.92369,0	0/1:19:9,10:9:315:10:336:-24.8435,0,-22.9677	0/1:152:77,75:77:2728:75:2644:-192.441,0,-200.006	0/1:174:109,65:109:3904:65:2206:-146.419,0,-299.174	0/1:78:56,22:56:1972:22:759:-45.1473,0,-154.272	1/1:105:0,105:0:0:105:3665:-330.055,-31.6082,0	0/1:98:13,85:13:459:85:2927:-234.159,0,-12.1431	0/1:36:17,19:17:608:19:651:-48.0684,0,-44.2149	1/1:260:0,260:0:0:260:9031:-812.787,-78.2678,0	0/1:229:142,87:142:5079:87:3019:-203.001,0,-388.29	1/1:24:0,24:0:0:24:843:-76.188,-7.22472,0	1/1:258:1,257:1:36:257:8966:-803.341,-74.0675,0	0/1:128:79,49:79:2807:49:1681:-113.037,0,-214.339	0/1:110:56,54:56:2000:54:1911:-139.153,0,-147.16	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69474	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:12:5,7:5:176:7:244:-18.6871,0,-12.5727	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	0/1:138:72,66:72:2562:66:2314:-166.978,0,-189.287	0/1:99:38,61:38:1347:61:2129:-162.072,0,-91.7169	1/1:27:1,26:1:36:26:909:-78.5252,-4.52954,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:88:1,87:1:36:87:2990:-265.729,-22.8924,0	0/1:22:12,10:12:432:10:347:-24.9391,0,-32.5985	0/1:99:60,39:60:2126:39:1367:-93.5202,0,-161.801	0/1:44:17,27:17:591:27:955:-73.0195,0,-40.2699	0/1:43:26,17:26:923:17:573:-38.9431,0,-70.4425	1/1:47:0,47:0:0:47:1668:-150.406,-14.1484,0	1/1:91:0,91:0:0:91:3151:-283.771,-27.3937,0	0/1:130:69,61:69:2433:61:2108:-150.664,0,-180.089	0/1:108:47,61:47:1676:61:2120:-158.555,0,-118.616	1/1:126:0,126:0:0:126:4431:-398.962,-37.9298,0	0/1:98:46,52:46:1609:52:1818:-134.394,0,-115.593	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:97:43,54:43:1516:54:1880:-140.271,0,-107.53	0/1:71:42,29:42:1495:29:1022:-70.9177,0,-113.471	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:177:0,177:0:0:177:6187:-556.933,-53.2823,0	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:23:9,14:9:300:14:496:-38.0506,0,-20.3984	0/1:83:47,36:47:1679:36:1251:-87.9028,0,-126.411	1/1:86:0,86:0:0:86:2978:-268.253,-25.8886,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:229:0,229:0:0:229:7922:-713.019,-68.9359,0	0/1:128:76,52:76:2696:52:1806:-124.223,0,-204.328	1/1:83:1,82:1:36:82:2797:-248.358,-21.3872,0	1/1:74:0,74:0:0:74:2548:-229.566,-22.2762,0	1/1:144:0,144:0:0:144:4996:-449.738,-43.3483,0	1/1:193:1,192:1:36:192:6640:-594.006,-54.5005,0	1/1:19:0,19:0:0:19:657:-59.4495,-5.71957,0	1/1:55:0,55:0:0:55:1900:-171.243,-16.5567,0	0/1:36:20,16:20:712:16:545:-38.5336,0,-53.5696	0/1:26:12,14:12:419:14:481:-35.7883,0,-30.2038	0/1:141:70,71:70:2485:71:2392:-173.082,0,-181.451	1/1:84:0,84:0:0:84:2922:-263.212,-25.2865,0	1/1:102:1,100:1:36:100:3505:-312.064,-27.1656,0	0/1:249:149,100:149:5318:100:3528:-242.757,0,-403.798	0/1:36:17,19:17:604:19:628:-45.9914,0,-43.8535	1/1:100:3,97:3:108:97:3413:-297.307,-20.0278,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:102:63,39:63:2228:39:1357:-91.713,0,-170.077	0/1:117:54,63:54:1908:63:2186:-161.783,0,-136.774	1/1:153:1,152:1:36:152:5320:-475.326,-42.4593,0	1/1:59:0,59:0:0:59:2038:-183.687,-17.7608,0	1/1:62:0,62:0:0:62:2165:-195.116,-18.6639,0	0/1:37:13,24:13:455:24:826:-63.5142,0,-30.1438	0/1:95:45,50:45:1601:50:1735:-127.834,0,-115.78	1/1:23:0,22:0:0:22:780:-70.1634,-6.62266,0	1/1:43:0,43:0:0:43:1471:-132.678,-12.9443,0	1/1:53:0,53:0:0:53:1853:-167.046,-15.9546,0	1/1:23:0,23:0:0:23:811:-73.3076,-6.92369,0	0/1:69:38,31:38:1360:31:1045:-73.5792,0,-101.93	0/1:41:28,13:28:1008:13:431:-26.7669,0,-78.6941	1/1:107:0,107:0:0:107:3657:-329.34,-32.2102,0	1/1:87:0,87:0:0:87:3058:-275.449,-26.1896,0
chr04	31987699	.	AAT	TAT,TAC	180387	PASS	AB=0.49048,0.508505;ABP=6.11122,5.48497;AC=137,51;AF=0.728723,0.271277;AN=188;AO=6470,2039;CIGAR=1X2M,1X1M1X;DP=8520;DPB=8520;DPRA=20.0298,0.897445;EPP=14052.4,4430.64;EPPR=0;GTI=1;LEN=1,3;MEANALT=1.71429,2.05263;MQM=59.7229,54.3477;MQMR=0;NS=94;NUMALT=2;ODDS=0.355207;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=228569,72063;QR=0;RO=0;RPL=6470,2039;RPP=14052.4,4430.64;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=14052.4,4430.64;SAR=6470,2039;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:16:0,9,7:0:0:9,7:295,246:-44.0466,-20.2853,-17.576,-24.1012,0,-21.994	1/1:127:0,127,0:0:0:127,0:4502,0:-405.346,-38.2308,0,-405.346,-38.2308,-405.346	1/1:75:0,72,3:0:0:72,3:2568,98:-231.015,-21.6742,0,-223.12,-13.4517,-222.217	1/1:201:0,201,0:0:0:201,0:7080,0:-637.262,-60.507,0,-637.262,-60.507,-637.262	1/2:28:0,15,13:0:0:15,13:536,462:-81.6247,-37.9483,-33.4328,-44.0322,0,-40.1188	1/2:32:0,21,11:0:0:21,11:736,394:-92.1534,-32.2767,-25.955,-60.2307,0,-56.9194	1/2:202:0,97,105:0:0:97,105:3357,3700:-573.501,-300.859,-271.659,-272.99,0,-241.382	1/1:128:0,128,0:0:0:128,0:4504,0:-405.497,-38.5318,0,-405.497,-38.5318,-405.497	1/1:136:0,136,0:0:0:136,0:4828,0:-434.394,-40.9401,0,-434.394,-40.9401,-434.394	1/1:208:0,206,1:0:0:206,1:7248,36:-651.887,-62.0122,0,-648.954,-59.0796,-648.653	1/2:27:0,11,16:0:0:11,16:396,574:-79.2416,-46.9289,-43.6175,-32.6714,0,-27.8549	1/2:63:0,34,29:0:0:34,29:1216,1034:-183.492,-84.337,-74.102,-99.5115,0,-90.7817	1/1:66:0,66,0:0:0:66,0:2368,0:-213.378,-19.868,0,-213.378,-19.868,-213.378	1/1:70:0,70,0:0:0:70,0:2496,0:-224.687,-21.0721,0,-224.687,-21.0721,-224.687	1/1:65:0,65,0:0:0:65,0:2320,0:-209.054,-19.567,0,-209.054,-19.567,-209.054	1/2:57:0,28,29:0:0:28,29:1002,1015:-164.28,-82.5774,-74.1486,-82.0552,0,-73.3254	1/2:55:0,28,27:0:0:28,27:1004,970:-160.77,-78.8803,-70.4515,-82.247,0,-74.1192	1/1:74:0,74,0:0:0:74,0:2644,0:-238.186,-22.2762,0,-238.186,-22.2762,-238.186	1/2:32:0,17,15:0:0:17,15:608,528:-92.4322,-42.8598,-37.7423,-49.925,0,-45.4096	1/2:131:0,50,81:0:0:50,81:1750,2870:-376.177,-233.803,-218.751,-142.726,0,-118.342	1/2:195:0,93,102:0:0:93,102:3277,3595:-559.05,-292.36,-264.365,-267.041,0,-236.336	1/2:47:0,19,28:0:0:19,28:661,992:-134.829,-81.0867,-75.3672,-54.092,0,-45.6632	1/1:102:0,102,0:0:0:102,0:3618,0:-325.785,-30.7051,0,-325.785,-30.7051,-325.785	1/1:126:0,116,9:0:0:116,9:4037,319:-363.03,-34.9195,0,-337.079,-8.94754,-334.37	1/2:43:0,29,14:0:0:29,14:1013,494:-122.913,-40.5192,-31.7893,-82.7449,0,-78.5305	1/1:328:0,327,0:0:0:327,0:11536,0:-1037.79,-98.4368,0,-1037.79,-98.4368,-1037.79	1/2:220:0,104,116:0:0:104,116:3653,4037:-624.786,-327.755,-296.448,-297.38,0,-262.46	1/1:22:0,22,0:0:0:22,0:765,0:-69.1677,-6.62266,0,-69.1677,-6.62266,-69.1677	1/1:189:0,189,0:0:0:189,0:6659,0:-599.393,-56.8947,0,-599.393,-56.8947,-599.393	1/2:179:0,104,74:0:0:104,74:3711,2633:-515.791,-213.267,-181.96,-302.6,0,-280.323	1/2:136:0,70,66:0:0:70,66:2480,2318:-390.046,-188.015,-166.943,-202.383,0,-182.515	1/2:7:0,4,3:0:0:4,3:144,108:-20.7763,-9.15779,-7.95367,-11.9765,0,-11.0734	1/2:3:0,1,2:0:0:1,2:36,72:-9.16256,-6.22497,-5.92394,-3.29724,0,-2.69518	1/2:5:0,1,4:0:0:1,4:32,144:-14.6466,-12.076,-11.775,-2.89828,0,-1.69416	2/2:5:0,0,5:0:0:0,5:0,175:-15.8692,-15.8692,-15.8692,-1.50515,-1.50515,0	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:202:0,101,100:0:0:101,100:3620,3538:-583.228,-287.986,-257.582,-295.38,0,-265.277	1/2:133:0,61,72:0:0:61,72:2176,2527:-382.972,-205.584,-187.221,-177.742,0,-156.068	1/1:35:0,35,0:0:0:35,0:1237,0:-111.624,-10.5361,0,-111.624,-10.5361,-111.624	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:136:0,134,2:0:0:134,2:4705,72:-423.235,-40.338,0,-417.494,-34.2448,-416.892	1/2:31:0,10,21:0:0:10,21:360,746:-90.1806,-60.8043,-57.794,-29.734,0,-23.4124	1/2:65:0,38,27:0:0:38,27:1336,945:-185.023,-76.27,-64.8309,-109.101,0,-100.973	1/2:92:0,44,48:0:0:44,48:1572,1686:-265.512,-137.411,-124.166,-128.454,0,-114.005	1/2:63:0,30,33:0:0:30,33:1053,1151:-179.567,-93.8731,-84.8422,-86.0431,0,-76.1091	1/1:22:0,22,0:0:0:22,0:772,0:-69.8004,-6.62266,0,-69.8004,-6.62266,-69.8004	1/1:64:0,63,1:0:0:63,1:2232,36:-200.786,-18.9649,0,-197.857,-15.6767,-197.555	1/2:154:0,78,76:0:0:78,76:2784,2674:-444.272,-217.326,-193.845,-227.3,0,-204.422	1/2:122:0,74,48:0:0:74,48:2613,1704:-351.483,-138.704,-116.428,-213.132,0,-198.683	1/1:141:0,141,0:0:0:141,0:4955,0:-446.088,-42.4452,0,-446.088,-42.4452,-446.088	1/2:153:0,73,79:0:0:73,79:2570,2777:-435.05,-225.825,-203.85,-209.222,0,-185.441	2/2:4:0,0,4:0:0:0,4:0,142:-13.1205,-13.1205,-13.1205,-1.20412,-1.20412,0	1/2:75:0,26,49:0:0:26,49:902,1734:-214.55,-141.235,-133.409,-73.6636,0,-58.9131	1/2:54:0,29,25:0:0:29,25:1036,891:-157.412,-72.944,-64.2142,-84.824,0,-77.2983	1/2:14:0,9,5:0:0:9,5:324,171:-40.4436,-14.0005,-11.2912,-26.7883,0,-25.2832	1/1:76:0,75,1:0:0:75,1:2614,33:-235.172,-22.5773,0,-232.506,-19.5817,-232.205	1/1:42:0,42,0:0:0:42,0:1496,0:-134.707,-12.6433,0,-134.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chr04	32059498	.	T	C	23670.1	PASS	AB=0.541342;ABP=41.0737;AC=35;AF=0.188172;AN=186;AO=1404;CIGAR=1X;DP=5732;DPB=5732;DPRA=1.4821;EPP=3051.76;EPPR=9398.97;GTI=5;LEN=1;MEANALT=1.02326;MQM=60;MQMR=59.9921;NS=93;NUMALT=1;ODDS=0.202783;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50059;QR=154585;RO=4327;RPL=0;RPP=3051.76;RPPR=9398.97;RPR=1404;RUN=1;SAF=0;SAP=3051.76;SAR=1404;SRF=0;SRP=9398.97;SRR=4327;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/0:60:60,0:60:2110:0:0:0,-18.0618,-190.166	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.145	0/0:178:178,0:178:6369:0:0:0,-53.5833,-573.298	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:26:15,11:15:540:11:377:-26.4312,0,-41.1098	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/1:58:29,29:29:1040:29:1039:-76.3646,0,-76.4546	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:59:37,22:37:1328:22:788:-53.484,0,-102.061	0/0:22:21,1:21:744:1:36:0,-3.02438,-63.6861	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:80:43,37:43:1544:37:1313:-94.3873,0,-115.171	0/1:193:78,114:78:2762:114:4057:-307.16,0,-190.662	0/1:39:7,32:7:233:32:1113:-88.7322,0,-9.55412	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:39:32,7:32:1152:7:252:-11.2888,0,-92.25	0/1:27:6,21:6:216:21:752:-59.8784,0,-11.6627	0/0:145:144,1:144:5144:1:36:0,-40.0511,-459.505	0/1:115:39,76:39:1404:76:2705:-209.075,0,-92.0408	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:153:153,0:153:5488:0:0:0,-46.0576,-494.046	0/1:145:64,81:64:2296:81:2893:-216.955,0,-163.234	0/1:62:24,38:24:856:38:1347:-102.866,0,-58.6972	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:171:74,97:74:2652:97:3484:-262.294,0,-187.45	0/1:65:41,24:41:1468:24:856:-57.7942,0,-112.849	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:63:62,1:62:2228:1:36:0,-15.3666,-197.186	0/1:21:8,13:8:284:13:456:-35.0516,0,-19.5817	0/1:48:12,36:12:413:36:1277:-100.782,0,-23.0484	0/1:41:18,23:18:648:23:816:-61.4195,0,-46.3097	0/1:54:33,21:33:1176:21:756:-52.1116,0,-89.8921	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/1:109:55,54:55:1968:54:1932:-141.344,0,-144.583	0/1:75:34,41:34:1220:41:1468:-109.839,0,-87.5296	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:99:44,55:44:1571:55:1940:-145.072,0,-111.879	0/1:16:9,7:9:320:7:248:-17.8477,0,-24.3259	0/0:22:21,1:21:752:1:36:0,-3.02438,-64.408	0/1:39:20,19:20:720:19:680:-49.789,0,-53.3886	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:105:105,0:105:3753:0:0:0,-31.6081,-337.969	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:25:10,15:10:356:15:540:-41.4108,0,-24.8555	0/1:70:36,34:36:1292:34:1220:-89.0347,0,-95.5117	0/0:105:103,2:103:3687:2:72:0,-24.7714,-325.195	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:131:131,0:131:4685:0:0:0,-39.4349,-421.809	0/1:139:65,74:65:2325:74:2647:-196.633,0,-167.665	0/0:65:60,5:60:2117:5:172:0,-3.74897,-174.907	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:137:133,4:133:4744:4:144:0,-27.9275,-413.804	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.48	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:37:20,17:20:712:17:607:-43.8236,0,-53.2685	0/1:32:19,13:19:665:13:468:-32.8267,0,-50.5398	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.964	0/0:90:90,0:90:3209:0:0:0,-27.0927,-289.027	0/1:167:78,89:78:2773:89:3192:-237.231,0,-199.538	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:157:157,0:157:5623:0:0:0,-47.2617,-506.19	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:76:36,40:36:1268:40:1400:-103.416,0,-91.5417	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/0:89:88,1:88:3160:1:36:0,-23.1934,-281.026	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/0:60:60,0:60:2127:0:0:0,-18.0618,-191.698	0/1:68:30,38:30:1061:38:1355:-101.78,0,-75.3293	0/1:145:68,77:68:2424:77:2752:-204.273,0,-174.767	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/1:131:59,72:59:2116:72:2569:-192.024,0,-151.274	0/1:75:23,52:23:828:52:1868:-145.822,0,-52.2669	0/0:78:78,0:78:2773:0:0:0,-23.4803,-249.81	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.036
chr04	32101074	.	G	C	155625	PASS	AB=0.644113;ABP=608.232;AC=144;AF=0.765957;AN=188;AO=7210;CIGAR=1X;DP=8411;DPB=8411;DPRA=0;EPP=15659.3;EPPR=2597.92;GTI=5;LEN=1;MEANALT=1.06383;MQM=59.6248;MQMR=59.8778;NS=94;NUMALT=1;ODDS=0.0223925;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258016;QR=42671;RO=1195;RPL=0;RPP=15659.3;RPPR=2597.92;RPR=7210;RUN=1;SAF=7210;SAP=15659.3;SAR=0;SRF=1195;SRP=2597.92;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:9,30:9:324:30:1080:-85.7707,0,-17.7657	1/1:88:0,88:0:0:88:3147:-283.443,-26.4906,0	1/1:202:0,202:0:0:202:7226:-649.662,-60.8081,0	1/1:307:0,307:0:0:307:10985:-988.445,-92.4162,0	0/1:13:3,10:3:108:10:351:-28.0133,0,-6.16178	0/1:25:11,14:11:396:14:504:-38.1714,0,-28.457	0/1:82:30,52:30:1072:52:1853:-142.349,0,-72.108	1/1:123:0,123:0:0:123:4408:-396.831,-37.0267,0	1/1:90:0,90:0:0:90:3231:-290.56,-27.0927,0	1/1:62:0,62:0:0:62:2215:-199.609,-18.6639,0	0/1:63:27,36:27:972:36:1288:-97.2493,0,-68.833	0/1:99:44,55:44:1584:55:1962:-147.006,0,-112.679	1/1:79:0,79:0:0:79:2820:-254.024,-23.7814,0	1/1:71:0,71:0:0:71:2527:-227.654,-21.3731,0	1/1:56:0,56:0:0:56:2003:-180.045,-16.8577,0	0/1:86:44,42:44:1584:42:1512:-110.472,0,-116.963	0/1:43:17,26:17:612:26:932:-70.0281,0,-42.4691	1/1:39:0,39:0:0:39:1400:-126.291,-11.7402,0	0/1:35:14,21:14:504:21:737:-56.0979,0,-35.162	0/1:122:35,87:35:1252:87:3109:-243.208,0,-76.2594	0/1:147:30,117:30:1057:117:4168:-331.029,0,-51.1876	0/1:33:15,18:15:540:18:644:-48.3544,0,-39.0025	1/1:155:0,155:0:0:155:5564:-500.775,-46.6597,0	1/1:42:2,40:2:72:40:1425:-121.707,-5.80654,0	0/1:71:18,53:18:644:53:1895:-149.44,0,-36.9175	1/1:362:0,362:0:0:362:12973:-1165.8,-108.973,0	0/1:244:85,159:85:3048:159:5692:-438.836,0,-200.471	1/1:33:0,33:0:0:33:1184:-106.306,-9.93399,0	1/1:275:0,275:0:0:275:9843:-885.69,-82.7833,0	0/1:82:27,55:27:968:55:1980:-153.767,0,-62.7529	0/1:64:23,41:23:824:41:1468:-113.15,0,-55.2174	0/1:10:1,9:1:32:9:320:-26.1321,0,-0.189013	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	1/1:3:0,3:0:0:3:108:-10.0727,-0.90309,0	0/1:10:5,5:5:180:5:180:-13.5278,0,-13.5418	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:209:82,126:82:2944:126:4512:-343.262,0,-202.219	0/1:59:19,40:19:680:40:1436:-111.736,0,-43.6382	1/1:58:0,58:0:0:58:2084:-187.822,-17.4597,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:233:1,232:1:36:232:8282:-741.481,-66.5417,0	1/1:34:0,34:0:0:34:1224:-110.434,-10.235,0	0/1:53:12,41:12:424:41:1453:-115.096,0,-22.5418	0/1:59:24,35:24:860:35:1256:-95.551,0,-59.9611	0/1:53:22,31:22:777:31:1112:-84.4344,0,-54.2876	1/1:103:0,103:0:0:103:3692:-332.48,-31.0061,0	1/1:78:0,78:0:0:78:2794:-251.399,-23.4803,0	0/1:144:34,110:34:1186:110:3922:-309.775,0,-63.6924	0/1:101:20,81:20:720:81:2916:-232.153,0,-34.7247	1/1:178:0,178:0:0:178:6373:-573.607,-53.5833,0	0/1:57:24,33:24:860:33:1184:-89.4801,0,-60.5631	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:188:90,98:90:3217:98:3485:-257.249,0,-233.157	0/1:72:14,58:14:504:58:2084:-166.151,0,-24.0239	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	1/1:221:0,220:0:0:220:7883:-708.933,-66.2266,0	1/1:43:0,43:0:0:43:1546:-139.431,-12.9443,0	1/1:16:0,16:0:0:16:565:-51.1771,-4.81648,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:57:18,39:18:603:39:1400:-109.087,0,-37.4225	1/1:95:0,95:0:0:95:3397:-305.94,-28.5979,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:193:0,192:0:0:192:6856:-616.543,-57.7978,0	0/1:126:27,98:27:957:98:3520:-279.017,0,-48.4555	1/1:62:0,62:0:0:62:2215:-198.823,-18.6639,0	1/1:83:0,83:0:0:83:2959:-266.528,-24.9855,0	1/1:141:0,141:0:0:141:5051:-454.469,-42.4452,0	1/1:96:0,96:0:0:96:3412:-307.208,-28.8989,0	1/1:60:0,60:0:0:60:2143:-193.042,-18.0618,0	1/1:68:0,68:0:0:68:2423:-218.32,-20.47,0	0/1:41:13,28:13:464:28:1008:-78.6941,0,-29.7553	0/1:24:11,13:11:381:13:468:-35.2349,0,-27.3959	0/1:99:35,64:35:1256:64:2292:-176.479,0,-83.5433	1/1:90:0,89:0:0:89:3187:-286.671,-26.7917,0	1/1:183:0,183:0:0:183:6549:-589.324,-55.0885,0	0/1:115:38,77:38:1353:77:2760:-214.016,0,-87.4499	0/1:50:8,42:8:288:42:1504:-120.603,0,-11.2159	1/1:107:0,107:0:0:107:3816:-343.606,-32.2102,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:88:29,59:29:1040:59:2120:-164.566,0,-67.4237	0/1:56:11,44:11:377:44:1580:-125.221,0,-17.3429	1/1:169:0,169:0:0:169:6017:-541.606,-50.8741,0	1/1:48:1,47:1:36:47:1676:-147.517,-10.8512,0	1/1:77:0,77:0:0:77:2756:-248.266,-23.1793,0	0/1:59:29,30:29:1044:30:1080:-79.7454,0,-76.514	0/1:132:64,68:64:2281:68:2448:-180.834,0,-165.814	1/1:24:0,24:0:0:24:864:-78.0662,-7.22472,0	1/1:71:0,71:0:0:71:2548:-229.546,-21.3731,0	1/1:79:0,79:0:0:79:2836:-255.271,-23.7814,0	1/1:79:0,79:0:0:79:2840:-255.808,-23.7814,0	0/1:133:66,67:66:2357:67:2405:-176.643,0,-172.207	0/1:72:43,29:43:1533:29:1040:-72.2379,0,-116.587	1/1:210:0,210:0:0:210:7481:-673.224,-63.2163,0	1/1:111:0,111:0:0:111:3988:-359.101,-33.4143,0
chr04	32101115	.	A	T	48529.9	PASS	AB=0.375255;ABP=866.038;AC=45;AF=0.239362;AN=188;AO=2418;CIGAR=1X;DP=16062;DPB=16062;DPRA=1.01464;EPP=5253.63;EPPR=29626.2;GTI=5;LEN=1;MEANALT=1.01786;MQM=58.1046;MQMR=50.2678;NS=94;NUMALT=1;ODDS=3.99908;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86098;QR=486756;RO=13642;RPL=1181;RPP=5.82657;RPPR=90.1748;RPR=1237;RUN=1;SAF=1181;SAP=5.82657;SAR=1237;SRF=7191;SRP=90.1748;SRR=6451;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:41,19:41:1464:19:663:-41.9236,0,-112.825	0/0:255:255,0:255:9080:0:0:0,-76.7626,-797.764	0/0:306:306,0:306:10897:0:0:0,-92.1152,-967.9	0/0:498:497,1:497:17745:1:32:0,-146.714,-1562.81	0/1:33:27,6:27:964:6:216:-9.85182,0,-75.0021	0/1:44:27,17:27:955:17:608:-41.8012,0,-71.5922	0/1:150:74,76:74:2652:76:2696:-197.542,0,-189.449	0/0:245:245,0:245:8763:0:0:0,-73.7523,-775.493	0/0:163:161,2:161:5752:2:72:0,-42.2312,-502.222	0/0:252:252,0:252:9000:0:0:0,-75.8596,-776.012	0/1:104:53,51:53:1891:51:1819:-132.635,0,-136.317	0/1:165:86,79:86:3064:79:2799:-202.193,0,-222.784	0/0:138:138,0:138:4906:0:0:0,-41.5421,-435.098	0/0:118:118,0:118:4215:0:0:0,-35.5215,-372.916	0/0:134:134,0:134:4774:0:0:0,-40.338,-417.353	0/1:126:72,54:72:2564:54:1904:-133.689,0,-188.979	0/1:97:54,43:54:1932:43:1533:-108.656,0,-141.125	0/0:107:107,0:107:3824:0:0:0,-32.2102,-337.508	0/1:68:32,36:32:1144:36:1284:-95.3056,0,-81.6696	0/1:245:165,80:165:5857:80:2859:-183.607,0,-440.398	0/1:256:190,66:190:6769:66:2346:-133.427,0,-523.028	0/1:66:36,30:36:1284:30:1063:-76.0988,0,-94.0831	0/0:200:197,3:197:7042:3:108:0,-50.1357,-616.674	0/0:191:186,5:186:6656:5:176:0,-41.3155,-560.497	0/1:94:70,24:70:2491:24:851:-48.536,0,-193.638	0/0:687:686,1:686:24490:1:36:0,-203.21,-2163.03	0/1:391:257,134:257:9157:134:4787:-313.019,0,-692.809	0/0:79:79,0:79:2798:0:0:0,-23.7814,-245.136	0/0:479:479,0:479:17128:0:0:0,-144.193,-1514.74	0/1:195:136,59:136:4821:59:2103:-130.792,0,-365.044	0/1:171:123,48:123:4400:48:1697:-101.398,0,-332.58	0/1:14:12,2:12:428:2:72:-2.62068,0,-34.2526	0/1:24:15,9:15:540:9:324:-22.2796,0,-40.9534	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.9677	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.3193	0/0:29:29,0:29:1036:0:0:0,-8.72987,-92.6582	0/1:415:224,191:224:8004:191:6827:-489.068,0,-580.833	0/1:209:147,62:147:5275:62:2204:-135.442,0,-397.494	0/0:100:100,0:100:3584:0:0:0,-30.103,-317.982	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.2633	0/0:387:384,3:384:13715:3:108:0,-106.426,-1203.97	0/0:55:55,0:55:1964:0:0:0,-16.5566,-174.534	0/1:113:87,26:87:3115:26:936:-50.5227,0,-239.12	0/1:143:74,69:74:2628:69:2464:-178.706,0,-186.551	0/1:107:52,55:52:1856:55:1972:-145.466,0,-132.06	0/0:176:176,0:176:6270:0:0:0,-52.9813,-556.843	0/0:184:183,1:183:6527:1:36:0,-51.7922,-572.537	0/1:267:180,87:180:6401:87:3089:-197.602,0,-484.588	0/1:175:129,46:129:4587:46:1648:-95.7904,0,-352.985	0/0:358:358,0:358:12765:0:0:0,-107.769,-1119.81	0/1:162:120,42:120:4296:42:1496:-86.0836,0,-328.014	0/1:16:7,9:7:252:9:324:-24.6878,0,-17.5737	0/1:253:132,121:132:4723:121:4298:-310.739,0,-344.784	0/1:91:68,23:68:2428:23:828:-47.3732,0,-190.484	0/1:18:13,5:13:468:5:165:-9.75414,0,-35.8317	0/0:359:359,0:359:12807:0:0:0,-108.07,-1130.36	0/0:86:86,0:86:3080:0:0:0,-25.8886,-270.16	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.0744	0/0:38:35,3:35:1256:3:108:0,-1.36679,-102.125	0/1:87:62,25:62:2220:25:868:-52.2332,0,-170.866	0/0:196:195,1:195:6976:1:36:0,-55.4062,-607.431	0/0:11:11,0:11:388:0:0:0,-3.31133,-34.0053	0/0:446:445,1:445:15922:1:36:0,-130.661,-1398.47	0/1:240:174,66:174:6204:66:2363:-140.509,0,-473.587	0/0:153:153,0:153:5434:0:0:0,-46.0576,-474.917	0/0:154:154,0:154:5469:0:0:0,-46.3586,-479.329	0/0:277:277,0:277:9872:0:0:0,-83.3853,-864.345	0/0:175:175,0:175:6245:0:0:0,-52.6802,-548.537	0/0:70:70,0:70:2499:0:0:0,-21.0721,-223.434	0/0:132:132,0:132:4691:0:0:0,-39.736,-414.975	0/1:136:86,50:86:3076:50:1776:-119.125,0,-228.837	0/1:30:17,13:17:612:13:468:-33.4248,0,-45.7496	0/1:148:102,46:102:3648:46:1637:-103.055,0,-278.933	0/0:196:196,0:196:6996:0:0:0,-59.0019,-613.849	0/0:270:270,0:270:9622:0:0:0,-81.2781,-853.755	0/1:267:181,86:181:6484:86:3084:-197.303,0,-487.762	0/1:69:57,12:57:2036:12:432:-18.4456,0,-160.66	0/0:250:249,1:249:8916:1:36:0,-71.6602,-784.26	0/1:11:10,1:10:356:1:36:-0.285939,0,-28.5957	0/1:203:125,78:125:4467:78:2792:-190.146,0,-331.171	0/1:128:87,41:87:3104:41:1453:-92.5063,0,-236.348	0/0:400:400,0:400:14308:0:0:0,-120.412,-1244.95	0/0:159:159,0:159:5596:0:0:0,-47.8638,-485.096	0/0:162:162,0:162:5743:0:0:0,-48.7669,-503.386	0/1:180:87,93:87:3092:93:3327:-244.901,0,-215.308	0/1:268:122,146:122:4372:146:5207:-387.088,0,-303.894	0/0:66:66,0:66:2352:0:0:0,-19.868,-207.101	0/0:120:120,0:120:4281:0:0:0,-36.1236,-378.082	0/0:134:134,0:134:4788:0:0:0,-40.338,-425.267	0/0:101:101,0:101:3589:0:0:0,-30.404,-320.755	0/1:186:95,91:95:3404:91:3200:-231.963,0,-246.624	0/1:148:71,75:71:2511:75:2652:-194.453,0,-175.262	0/0:347:347,0:347:12356:0:0:0,-104.457,-1089.62	0/0:205:205,0:205:7319:0:0:0,-61.7111,-643.44
chr04	32101116	.	C	T	366184	PASS	AB=0.625313;ABP=875.948;AC=143;AF=0.760638;AN=188;AO=13667;CIGAR=1X;DP=16095;DPB=16095;DPRA=0;EPP=29680.5;EPPR=5271;GTI=5;LEN=1;MEANALT=1.02128;MQM=50.1769;MQMR=58.1286;NS=94;NUMALT=1;ODDS=1.10906;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=487344;QR=85909;RO=2426;RPL=7138;RPP=61.9375;RPPR=5.62036;RPR=6529;RUN=1;SAF=7138;SAP=61.9375;SAR=6529;SRF=1186;SRP=5.62036;SRR=1240;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:18,40:18:625:40:1411:-108.778,0,-39.1051	1/1:257:0,257:0:0:257:9157:-805.401,-77.3647,0	1/1:306:0,306:0:0:306:10939:-971.515,-92.1152,0	1/1:498:1,497:1:36:497:17678:-1557.38,-146.315,0	0/1:34:6,28:6:216:28:999:-77.8872,0,-9.55079	0/1:44:18,26:18:625:26:936:-69.9326,0,-43.3223	0/1:147:73,74:73:2598:74:2644:-189.923,0,-189.63	1/1:243:0,243:0:0:243:8653:-766.294,-73.1503,0	1/1:166:2,164:2:72:164:5850:-510.346,-43.1343,0	1/1:256:0,256:0:0:256:9140:-787.482,-77.0637,0	0/1:107:52,55:52:1853:55:1960:-141.01,0,-134.784	0/1:164:78,85:78:2723:85:3035:-220.304,0,-195.6	1/1:137:0,137:0:0:137:4886:-433.149,-41.2411,0	1/1:115:0,115:0:0:115:4125:-364.655,-34.6185,0	1/1:133:0,133:0:0:133:4761:-416.022,-40.037,0	0/1:131:58,73:58:2013:73:2616:-191.752,0,-141.988	0/1:97:43,54:43:1518:54:1927:-141.337,0,-107.306	1/1:107:0,107:0:0:107:3826:-337.537,-32.2102,0	0/1:70:37,33:37:1305:33:1175:-83.8502,0,-96.5889	0/1:247:78,169:78:2791:169:6032:-454.268,0,-176.878	0/1:255:65,190:65:2324:190:6720:-518.547,0,-131.75	0/1:67:31,36:31:1112:36:1292:-94.5617,0,-80.2083	1/1:202:3,199:3:108:199:7119:-623.549,-50.7377,0	1/1:195:5,190:5:171:190:6741:-567.885,-42.9787,0	0/1:96:24,72:24:856:72:2553:-198.493,0,-48.3846	1/1:680:1,679:1:36:679:24245:-2141.82,-201.103,0	0/1:396:134,262:134:4737:262:9334:-706.61,0,-307.214	1/1:80:0,80:0:0:80:2857:-249.889,-24.0824,0	1/1:482:0,482:0:0:482:17256:-1527.17,-145.096,0	0/1:191:58,133:58:2047:133:4729:-358.241,0,-126.956	0/1:170:46,124:46:1635:124:4414:-334.301,0,-96.2066	0/1:14:2,12:2:72:12:428:-34.2526,0,-2.62068	0/1:23:9,14:9:324:14:500:-37.7143,0,-22.5806	1/1:5:0,5:0:0:5:180:-16.3333,-1.50515,0	0/1:13:5,8:5:180:8:288:-22.0182,0,-12.6387	1/1:29:0,29:0:0:29:1040:-92.8521,-8.72987,0	0/1:422:193,229:193:6856:229:8169:-592.488,0,-489.627	0/1:211:65,146:65:2317:146:5196:-390.068,0,-145.007	1/1:101:0,101:0:0:101:3589:-318.45,-30.404,0	1/1:6:0,6:0:0:6:216:-19.2633,-1.80618,0	1/1:389:3,386:3:108:386:13777:-1209.92,-107.028,0	1/1:55:0,55:0:0:55:1968:-174.94,-16.5567,0	0/1:110:24,86:24:835:86:3051:-234.43,0,-42.3381	0/1:144:68,76:68:2423:76:2728:-194.493,0,-174.707	0/1:106:55,51:55:1928:51:1803:-127.664,0,-141.813	1/1:175:0,175:0:0:175:6186:-549.708,-52.6803,0	1/1:183:4,179:4:144:179:6406:-552.109,-41.7758,0	0/1:261:83,178:83:2971:178:6383:-484.406,0,-188.79	0/1:179:47,132:47:1671:132:4704:-361.966,0,-96.652	1/1:360:1,359:1:36:359:12826:-1121.5,-104.788,0	0/1:160:42,118:42:1496:118:4207:-321.276,0,-86.6846	0/1:15:8,7:8:288:7:252:-17.8747,0,-21.752	0/1:253:120,133:120:4272:133:4773:-349.17,0,-308.441	0/1:89:22,67:22:777:67:2412:-189.59,0,-43.3824	0/1:19:5,14:5:168:14:504:-38.6632,0,-9.73099	1/1:362:0,362:0:0:362:12909:-1137.84,-108.973,0	1/1:85:2,83:2:72:83:2976:-254.054,-18.7508,0	1/1:17:0,17:0:0:17:604:-54.4763,-5.11751,0	1/1:41:3,38:3:108:38:1368:-112.095,-2.26988,0	0/1:92:26,65:26:924:65:2290:-175.876,0,-55.8366	1/1:196:2,194:2:72:194:6945:-600.79,-52.1676,0	1/1:11:0,11:0:0:11:379:-33.1885,-3.31133,0	1/1:442:1,441:1:36:441:15708:-1380.84,-129.457,0	0/1:240:67,173:67:2391:173:6196:-471.783,0,-143.031	1/1:154:0,154:0:0:154:5491:-480.297,-46.3586,0	1/1:158:0,158:0:0:158:5618:-492.428,-47.5627,0	1/1:274:0,274:0:0:274:9790:-856.976,-82.4822,0	1/1:175:0,175:0:0:175:6227:-546.096,-52.6803,0	1/1:69:0,69:0:0:69:2480:-221.785,-20.7711,0	1/1:132:0,132:0:0:132:4685:-415.384,-39.736,0	0/1:139:51,88:51:1823:88:3139:-233.329,0,-122.407	0/1:30:13,17:13:468:17:612:-45.7496,0,-33.4248	0/1:150:46,104:46:1621:104:3680:-281.718,0,-101.014	1/1:196:0,196:0:0:196:6964:-611.168,-59.0019,0	1/1:268:0,268:0:0:268:9519:-844.875,-80.676,0	0/1:266:85,181:85:3033:181:6453:-485.41,0,-193.016	0/1:69:12,57:12:419:57:2034:-160.374,0,-17.267	1/1:254:1,253:1:36:253:9034:-794.519,-72.8644,0	0/1:11:1,10:1:36:10:360:-28.898,0,-0.285939	0/1:203:79,124:79:2796:124:4383:-324.736,0,-190.435	0/1:125:41,84:41:1450:84:2982:-226.394,0,-93.1418	1/1:406:0,406:0:0:406:14499:-1262.73,-122.218,0	1/1:159:1,158:1:36:158:5595:-481.256,-44.2655,0	1/1:159:0,159:0:0:159:5644:-494.69,-47.8638,0	0/1:182:93,89:93:3273:89:3159:-221.378,0,-239.454	0/1:269:148,121:148:5213:121:4307:-298.331,0,-387.336	1/1:68:0,68:0:0:68:2431:-213.263,-20.47,0	1/1:117:0,117:0:0:117:4196:-370.57,-35.2205,0	1/1:135:0,135:0:0:135:4809:-427.162,-40.6391,0	1/1:101:0,101:0:0:101:3603:-321.928,-30.404,0	0/1:184:89,95:89:3131:95:3385:-245.436,0,-225.713	0/1:147:78,69:78:2704:69:2442:-169.193,0,-199.246	1/1:351:0,351:0:0:351:12532:-1105.11,-105.662,0	1/1:205:0,205:0:0:205:7320:-643.025,-61.7112,0
chr04	32101127	.	TAT	CAC,TAC	158143	PASS	AB=0.601988,0.395446;ABP=284.714,299.066;AC=143,45;AF=0.760638,0.239362;AN=188;AO=6600,1251;CIGAR=1X1M1X,2M1X;DP=7874;DPB=7874.33;DPRA=0,0.9121;EPP=14334.7,2719.52;EPPR=11.6962;GTI=9;LEN=3,1;MEANALT=1.78723,2.2;MQM=39.7959,56.2958;MQMR=60;NS=94;NUMALT=2;ODDS=0.712091;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=231481,44486;QR=144;RO=4;RPL=0,0;RPP=14334.7,2719.52;RPPR=11.6962;RPR=6600,1251;RUN=1,1;SAF=0,0;SAP=14334.7,2719.52;SAR=6600,1251;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:21:0,11,10:0:0:11,10:386,345:-58.732,-28.3623,-25.0509,-30.7124,0,-27.7021	1/1:176:0,175,0:0:0:175,0:6146,0:-534.156,-52.6803,0,-534.156,-52.6803,-534.156	1/1:107:0,107,0:0:0:107,0:3732,0:-325.683,-32.2102,0,-325.683,-32.2102,-325.683	1/1:200:0,200,0:0:0:200,0:7002,0:-601.296,-60.206,0,-601.296,-60.206,-601.296	1/2:21:0,17,3:0:0:17,3:598,108:-55.5609,-8.80789,-3.69038,-46.7505,0,-45.8474	1/2:22:0,15,7:0:0:15,7:517,252:-61.5636,-20.9162,-16.4008,-40.9991,0,-38.8919	1/2:68:0,23,45:0:0:23,45:812,1616:-193.958,-131.997,-125.073,-62.3028,0,-48.7564	1/1:125:0,124,1:0:0:124,1:4376,36:-380.582,-37.3277,0,-377.648,-34.0342,-377.347	1/1:78:0,78,0:0:0:78,0:2756,0:-239.908,-23.4803,0,-239.908,-23.4803,-239.908	1/1:193:0,193,0:0:0:193,0:6696,0:-571.548,-58.0988,0,-571.548,-58.0988,-571.548	1/2:42:0,18,24:0:0:18,24:627,864:-118.912,-70.8039,-65.3853,-48.4513,0,-41.2266	1/2:66:0,31,35:0:0:31,35:1084,1226:-184.845,-100.009,-90.6774,-85.1789,0,-74.6428	1/1:61:0,61,0:0:0:61,0:2105,0:-184.266,-18.3628,0,-184.266,-18.3628,-184.266	1/1:48:0,48,0:0:0:48,0:1680,0:-144.47,-14.4494,0,-144.47,-14.4494,-144.47	1/1:81:0,81,0:0:0:81,0:2854,0:-245.164,-24.3834,0,-245.164,-24.3834,-245.164	1/2:44:0,30,14:0:0:30,14:1031,504:-121.422,-41.4637,-32.4328,-80.3081,0,-76.0937	1/2:54:0,29,25:0:0:29,25:1014,882:-151.658,-71.7284,-62.9985,-80.2756,0,-72.7499	1/1:69:0,69,0:0:0:69,0:2412,0:-210.854,-20.7711,0,-210.854,-20.7711,-210.854	1/2:33:0,10,23:0:0:10,23:352,824:-95.1497,-67.4705,-64.4602,-28.0253,0,-21.1016	1/2:128:0,83,45:0:0:83,45:2911,1607:-354.794,-131.176,-106.191,-223.966,0,-210.42	1/2:111:0,75,36:0:0:75,36:2649,1277:-310.283,-103.479,-80.9018,-207.152,0,-196.315	1/2:34:0,18,16:0:0:18,16:637,572:-97.0824,-46.9829,-41.5644,-50.4499,0,-45.6334	1/1:50:0,48,2:0:0:48,2:1687,72:-145.021,-14.4494,0,-139.15,-8.21971,-138.548	1/1:156:0,151,4:0:0:151,4:5327,140:-457.789,-45.4555,0,-446.406,-34.0292,-445.202	1/2:24:0,19,5:0:0:19,5:676,180:-66.9426,-15.039,-9.31948,-52.2585,0,-50.7533	1/1:334:0,331,2:0:0:331,2:11602,72:-1009.81,-99.6409,0,-1003.94,-93.7321,-1003.33	1/2:155:0,104,51:0:0:104,51:3632,1806:-429.626,-147.396,-116.089,-282.577,0,-267.225	1/1:46:0,46,0:0:0:46,0:1602,0:-138.484,-13.8474,0,-138.484,-13.8474,-138.484	1/1:210:0,210,0:0:0:210,0:7359,0:-638.056,-63.2163,0,-638.056,-63.2163,-638.056	1/2:112:0,80,32:0:0:80,32:2803,1148:-312.231,-93.9459,-69.8635,-218.637,0,-209.004	1/2:110:0,83,27:0:0:83,27:2886,939:-300.019,-76.6297,-51.6442,-223.733,0,-215.605	1/2:4:0,3,1:0:0:3,1:106,36:-11.5685,-3.29553,-2.39244,-8.62782,0,-8.32679	1/2:7:0,6,1:0:0:6,1:214,36:-20.0094,-3.29553,-1.48935,-17.0712,0,-16.7701	1/1:2:0,2,0:0:0:2,0:67,0:-6.21237,-0.60206,0,-6.21237,-0.60206,-6.21237	1/1:3:0,3,0:0:0:3,0:108,0:-9.74595,-0.90309,0,-9.74595,-0.90309,-9.74595	1/1:10:0,10,0:0:0:10,0:358,0:-31.529,-3.0103,0,-31.529,-3.0103,-31.529	1/2:213:0,105,108:0:0:105,108:3652,3817:-593.568,-310.792,-279.184,-283.119,0,-250.607	1/2:150:0,107,41:0:0:107,41:3749,1449:-409.592,-117.882,-85.6714,-291.706,0,-279.364	1/1:43:0,42,1:0:0:42,1:1481,36:-128.501,-12.6433,0,-125.566,-9.34972,-125.265	1/1:4:0,4,0:0:0:4,0:133,0:-11.9357,-1.20412,0,-11.9357,-1.20412,-11.9357	1/1:162:0,160,2:0:0:160,2:5635,72:-487.511,-48.1648,0,-481.638,-41.9327,-481.036	1/1:22:0,22,0:0:0:22,0:784,0:-68.3486,-6.62266,0,-68.3486,-6.62266,-68.3486	1/2:62:0,47,15:0:0:47,15:1626,525:-169.095,-43.0308,-28.8824,-126.409,0,-121.894	1/2:89:0,41,47:0:0:41,47:1444,1662:-245.694,-135.256,-122.914,-110.577,0,-96.4287	1/2:55:0,21,34:0:0:21,34:734,1215:-156.094,-99.3455,-93.0238,-57.0914,0,-46.8564	1/1:75:0,75,0:0:0:75,0:2601,0:-227.693,-22.5773,0,-227.693,-22.5773,-227.693	1/1:111:3,106,1:3:108:106,1:3757,36:-317.071,-23.0968,0,-315.038,-28.9727,-323.549	1/2:122:0,69,53:0:0:69,53:2378,1900:-338.395,-155.014,-134.243,-183.727,0,-167.772	1/2:77:0,51,26:0:0:51,26:1786,936:-214.746,-76.5931,-61.2406,-138.504,0,-130.677	1/1:185:0,185,0:0:0:185,0:6527,0:-559.979,-55.6906,0,-559.979,-55.6906,-559.979	1/2:107:0,88,19:0:0:88,19:3113,680:-300.499,-55.7092,-29.2186,-245.144,0,-239.425	1/2:5:0,4,1:0:0:4,1:142,36:-14.2711,-3.29553,-2.09141,-11.331,0,-11.03	1/2:67:0,36,31:0:0:36,31:1267,1094:-187.92,-89.4103,-78.5732,-98.8549,0,-89.5229	1/2:18:0,10,8:0:0:10,8:354,288:-51.764,-23.8518,-20.8415,-28.2648,0,-25.8566	1/2:7:0,6,1:0:0:6,1:205,36:-18.7298,-3.29624,-1.49006,-15.7876,0,-15.4866	1/1:136:0,136,0:0:0:136,0:4810,0:-410.073,-40.9401,0,-410.073,-40.9401,-410.073	1/1:43:0,43,0:0:0:43,0:1493,0:-1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chr04	32106565	.	A	T	94563.3	PASS	AB=0.47976;ABP=12.5036;AC=140;AF=0.752688;AN=186;AO=4333;CIGAR=1X;DP=5728;DPB=5728;DPRA=0;EPP=8763.45;EPPR=2775.07;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.6621;MQMR=59.911;NS=93;NUMALT=1;ODDS=0.37103;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154510;QR=49934;RO=1394;RPL=76;RPP=8763.45;RPPR=2775.07;RPR=4257;RUN=1;SAF=4333;SAP=9412;SAR=0;SRF=1394;SRP=3030.04;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:118:0,118:0:0:118:4208:-378.264,-35.5215,0	1/1:145:0,145:0:0:145:5148:-463.41,-43.6494,0	1/1:166:0,166:0:0:166:5916:-531.766,-49.971,0	0/1:71:42,29:42:1508:29:1025:-71.1754,0,-114.641	0/1:20:6,14:6:216:14:504:-39.6611,0,-13.7699	0/1:82:35,47:35:1252:47:1663:-125.269,0,-88.3006	1/1:55:0,55:0:0:55:1960:-176.355,-16.5567,0	1/1:34:0,34:0:0:34:1208:-109.007,-10.235,0	1/1:77:0,77:0:0:77:2752:-247.898,-23.1793,0	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.954	0/1:31:16,15:16:572:15:540:-39.6046,0,-42.4815	1/1:37:0,37:0:0:37:1320:-119.101,-11.1381,0	1/1:27:0,27:0:0:27:964:-87.0303,-8.12781,0	1/1:38:0,38:0:0:38:1360:-122.698,-11.4391,0	0/1:33:22,11:22:792:11:396:-26.0488,0,-61.6717	0/1:44:20,24:20:720:24:860:-64.4756,0,-51.8135	1/1:18:0,18:0:0:18:648:-58.651,-5.41854,0	0/1:26:14,12:14:504:12:428:-31.0319,0,-37.8698	0/1:212:121,91:121:4336:91:3268:-230.497,0,-325.97	0/1:66:27,39:27:957:39:1392:-105.709,0,-66.5759	0/1:168:128,40:128:4581:40:1436:-78.9646,0,-361.879	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:70:4,66:4:144:66:2357:-199.073,-7.75848,0	0/1:59:30,29:30:1065:29:1040:-76.0822,0,-78.399	1/1:182:0,182:0:0:182:6498:-584.875,-54.7875,0	0/1:100:52,48:52:1864:48:1726:-125.468,0,-137.936	1/1:11:0,11:0:0:11:392:-35.6062,-3.31133,0	1/1:268:0,268:0:0:268:9540:-858.411,-80.676,0	0/1:58:26,32:26:936:32:1139:-85.3362,0,-67.0997	0/1:29:15,14:15:532:14:504:-36.9643,0,-39.4832	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:14:2,12:2:72:12:412:-33.1922,0,-2.6223	.:.:.:.:.:.:.:.	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:100:52,48:52:1860:48:1720:-124.972,0,-136.719	0/1:113:55,58:55:1980:58:2076:-153.09,0,-144.457	1/1:45:0,45:0:0:45:1592:-143.55,-13.5464,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:147:2,145:2:72:145:5191:-460.47,-37.4147,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:90:37,52:37:1319:52:1843:-138.994,0,-91.8598	0/1:30:14,16:14:504:16:546:-40.4245,0,-36.6672	0/1:26:13,13:13:468:13:455:-33.4528,0,-34.6329	1/1:77:0,77:0:0:77:2741:-246.9,-23.1793,0	1/1:55:0,55:0:0:55:1963:-176.932,-16.5567,0	0/1:95:52,43:52:1864:43:1548:-110.924,0,-139.442	0/1:73:41,32:41:1472:32:1141:-81.01,0,-110.8	1/1:90:0,90:0:0:90:3189:-286.913,-27.0927,0	0/1:151:71,80:71:2556:80:2830:-209.471,0,-184.834	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:106:50,56:50:1792:56:2011:-149.352,0,-129.653	0/1:11:9,2:9:324:2:63:-2.67182,0,-26.1945	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	1/1:107:0,107:0:0:107:3792:-341.344,-32.2102,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:14:6,8:6:216:8:288:-22.0499,0,-15.5761	1/1:57:0,57:0:0:57:2012:-181.346,-17.1587,0	1/1:4:0,4:0:0:4:135:-12.4823,-1.20412,0	1/1:156:0,156:0:0:156:5563:-500.671,-46.9607,0	0/1:63:37,26:37:1313:26:928:-64.871,0,-99.5025	1/1:42:0,42:0:0:42:1482:-133.67,-12.6433,0	1/1:81:0,81:0:0:81:2903:-261.496,-24.3834,0	1/1:88:0,88:0:0:88:3141:-282.906,-26.4906,0	1/1:56:0,56:0:0:56:2016:-181.706,-16.8577,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:57:0,57:0:0:57:2040:-183.784,-17.1587,0	0/1:38:20,18:20:720:18:648:-47.2127,0,-53.6896	0/1:7:3,4:3:108:4:136:-10.4683,0,-7.96796	0/1:87:45,42:45:1597:42:1499:-108.984,0,-117.828	1/1:43:0,43:0:0:43:1540:-138.89,-12.9443,0	1/1:54:0,54:0:0:54:1926:-173.542,-16.2556,0	0/1:146:53,93:53:1908:93:3340:-256.858,0,-128.047	0/1:84:47,37:47:1680:37:1328:-94.5348,0,-126.201	1/1:41:0,41:0:0:41:1451:-130.861,-12.3422,0	0/1:5:2,3:2:72:3:104:-8.19672,0,-5.33157	0/1:67:32,35:32:1152:35:1256:-93.1763,0,-83.8211	0/1:92:51,41:51:1806:41:1457:-103.727,0,-135.123	1/1:161:1,160:1:36:160:5723:-511.574,-44.8676,0	1/1:66:0,66:0:0:66:2347:-211.485,-19.868,0	1/1:34:0,34:0:0:34:1216:-109.742,-10.235,0	0/1:44:22,22:22:788:22:768:-56.19,0,-57.9979	0/1:60:33,27:33:1184:27:968:-69.3709,0,-88.8065	1/1:26:0,26:0:0:26:932:-84.1235,-7.82678,0	1/1:53:0,53:0:0:53:1895:-170.826,-15.9546,0	1/1:24:0,24:0:0:24:850:-76.8173,-7.22472,0	1/1:13:0,13:0:0:13:464:-42.096,-3.91339,0	0/1:50:27,23:27:968:23:828:-59.7895,0,-72.316	0/1:30:20,10:20:720:10:360:-23.7134,0,-56.0979	1/1:103:0,103:0:0:103:3642:-327.9,-31.0061,0	1/1:50:0,50:0:0:50:1779:-160.383,-15.0515,0
chr04	32106718	.	T	C	17655.9	PASS	AB=0.519012;ABP=9.36816;AC=46;AF=0.247312;AN=186;AO=1062;CIGAR=1X;DP=4107;DPB=4107;DPRA=1.26755;EPP=2300.44;EPPR=6589.11;GTI=1;LEN=1;MEANALT=1;MQM=59.9849;MQMR=59.9974;NS=93;NUMALT=1;ODDS=1.20055;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37824;QR=108593;RO=3045;RPL=1;RPP=2300.44;RPPR=6589.11;RPR=1061;RUN=1;SAF=0;SAP=2309.11;SAR=1062;SRF=0;SRP=6615.14;SRR=3045;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:8,15:8:288:15:536:-41.6511,0,-19.3437	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.897	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:44:20,24:20:705:24:860:-64.4765,0,-50.5275	0/1:24:15,9:15:508:9:324:-22.2811,0,-38.8152	0/1:64:27,37:27:972:37:1302:-98.209,0,-68.532	0/0:85:84,1:84:2996:1:36:0,-21.9893,-266.274	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:38:19,19:19:675:19:680:-50.09,0,-49.6378	0/1:55:19,36:19:675:36:1279:-98.8566,0,-44.5203	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/0:40:40,0:40:1419:0:0:0,-12.0412,-128.007	0/1:23:13,10:13:464:10:356:-25.4576,0,-35.1738	0/1:33:16,17:16:576:17:597:-44.1221,0,-42.241	0/0:30:30,0:30:1059:0:0:0,-9.0309,-95.6204	0/1:24:10,14:10:360:14:492:-37.3876,0,-25.5196	0/1:66:33,33:33:1184:33:1176:-86.2707,0,-87.0003	0/1:36:19,17:19:669:17:597:-43.219,0,-49.6969	0/1:39:8,31:8:273:31:1100:-87.5701,0,-13.16	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:52:50,2:50:1764:2:72:0,-8.81684,-152.204	0/1:69:37,32:37:1306:32:1148:-82.8588,0,-97.0689	0/0:133:132,1:132:4685:1:36:0,-36.4387,-418.212	0/1:82:39,43:39:1392:43:1506:-111.146,0,-100.895	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:72:71,1:71:2556:1:36:0,-18.0759,-226.691	0/1:56:25,31:25:892:31:1092:-81.7319,0,-63.742	0/1:59:31,28:31:1116:28:991:-71.7428,0,-82.9909	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:110:61,49:61:2188:49:1747:-124.4,0,-164.072	0/1:70:32,38:32:1144:38:1355:-101.178,0,-82.1974	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:65:64,1:64:2288:1:36:0,-15.9687,-202.583	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:49:28,21:28:996:21:748:-52.8943,0,-75.2044	0/1:31:18,13:18:639:13:464:-32.7656,0,-48.5063	0/1:41:26,15:26:932:15:540:-36.5943,0,-71.8566	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:57:37,20:37:1324:20:716:-47.609,0,-102.303	0/1:52:23,29:23:828:29:1044:-78.6212,0,-59.1906	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:111:53,58:53:1872:58:2069:-153.065,0,-135.342	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:104:48,56:48:1689:56:2012:-150.046,0,-120.979	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:21:12,9:12:428:9:320:-22.8207,0,-32.5372	0/0:78:78,0:78:2768:0:0:0,-23.4803,-249.363	.:.:.:.:.:.:.:.	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/1:103:49,54:49:1735:54:1940:-143.87,0,-125.428	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.692	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:71:70,1:70:2504:1:36:0,-17.7749,-222.014	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:55:23,32:23:828:32:1140:-86.3526,0,-58.2875	0/1:12:9,3:9:324:3:99:-5.62422,0,-25.8935	0/1:26:11,15:11:392:15:540:-41.1098,0,-27.7933	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/1:58:32,26:32:1136:26:932:-66.7391,0,-85.0892	0/1:37:21,16:21:752:16:568:-40.3132,0,-56.8681	0/0:27:25,2:25:896:2:72:0,-1.29109,-74.1236	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:75:28,47:28:995:47:1680:-128.91,0,-67.2868	0/1:29:12,17:12:432:17:597:-45.3263,0,-30.4913	0/0:123:123,0:123:4380:0:0:0,-37.0267,-394.376	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:27:9,18:9:324:18:644:-50.1628,0,-21.378	0/1:79:42,37:42:1496:37:1324:-95.6807,0,-111.153	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:36:36,0:36:1271:0:0:0,-10.8371,-114.692	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:72:30,42:30:1057:42:1477:-111.55,0,-73.7648	0/1:34:11,23:11:388:23:824:-64.2483,0,-25.0223	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638
chr04	32120979	.	T	A	89594.9	PASS	AB=0.514367;ABP=16.8621;AC=49;AF=0.260638;AN=188;AO=4005;CIGAR=1X;DP=15917;DPB=15917;DPRA=0.994252;EPP=8699.76;EPPR=25813.1;GTI=1;LEN=1;MEANALT=1.15254;MQM=59.9823;MQMR=59.9721;NS=94;NUMALT=1;ODDS=3.01915;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141131;QR=419919;RO=11890;RPL=1630;RPP=303.94;RPPR=1060.23;RPR=2375;RUN=1;SAF=1630;SAP=303.94;SAR=2375;SRF=4743;SRP=1058.47;SRR=7147;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:30,40:30:1068:40:1436:-108.466,0,-75.36	0/0:240:238,2:238:8407:2:72:0,-65.4105,-749.805	0/0:223:221,0:221:7836:0:0:0,-66.5276,-704.869	0/0:326:324,0:324:11491:0:0:0,-97.5337,-1033.68	0/1:115:53,62:53:1877:62:2199:-163.555,0,-134.588	0/1:99:37,62:37:1303:62:2178:-166.481,0,-87.7686	0/1:204:100,104:100:3566:104:3698:-271.611,0,-259.738	0/0:277:274,2:274:9658:2:72:0,-76.6074,-862.348	0/0:215:215,0:215:7599:0:0:0,-64.7214,-683.953	0/0:173:173,0:173:6158:0:0:0,-52.0782,-554.002	0/1:167:101,66:101:3517:66:2294:-156.446,0,-266.472	0/1:223:104,119:104:3692:119:4159:-307.364,0,-265.353	0/0:227:226,0:226:7985:0:0:0,-68.0328,-718.452	0/0:205:205,0:205:7184:0:0:0,-61.7111,-646.36	0/0:178:178,0:178:6337:0:0:0,-53.5833,-570.424	0/1:139:70,69:70:2437:69:2442:-178.192,0,-177.741	0/1:189:91,95:91:3208:95:3391:-249.067,0,-232.606	0/0:160:159,1:159:5618:1:36:0,-44.5665,-502.149	0/1:77:41,35:41:1442:35:1220:-86.9021,0,-106.875	0/1:263:112,151:112:3947:151:5358:-403.182,0,-276.251	0/1:257:104,153:104:3681:153:5401:-408.858,0,-253.94	0/1:95:21,74:21:737:74:2572:-203.13,0,-38.0528	0/0:151:151,0:151:5379:0:0:0,-45.4555,-484.219	0/0:109:100,9:100:3569:9:309:0,-4.67156,-293.276	0/1:136:70,66:70:2466:66:2346:-170.458,0,-181.254	0/0:417:417,0:417:14705:0:0:0,-125.53,-1323.2	0/1:368:178,189:178:6308:189:6643:-487.157,0,-457.018	0/0:96:96,0:96:3382:0:0:0,-28.8989,-304.596	0/0:321:321,0:321:11405:0:0:0,-96.6306,-1026.33	0/1:266:127,136:127:4500:136:4826:-354.966,0,-325.64	0/1:173:96,77:96:3398:77:2734:-194.225,0,-253.959	0/1:9:5,4:5:152:4:140:-10.2353,0,-11.2707	0/1:28:11,17:11:392:17:600:-45.9004,0,-27.1912	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:474:248,226:248:8679:226:7874:-566.011,0,-638.093	0/1:179:85,93:85:3001:93:3239:-237.79,0,-216.375	0/0:156:156,0:156:5471:0:0:0,-46.9607,-492.528	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/0:249:245,4:245:8688:4:140:0,-62.0119,-768.972	0/0:57:57,0:57:2001:0:0:0,-17.1587,-180.362	0/1:236:118,118:118:4121:118:4143:-302.011,0,-300.033	0/1:194:91,103:91:3168:103:3663:-271.472,0,-226.9	0/1:154:90,64:90:3141:64:2251:-156.492,0,-236.559	0/0:146:145,1:145:5160:1:36:0,-40.3521,-460.943	0/0:215:215,0:215:7636:0:0:0,-64.7214,-687.283	0/1:232:104,128:104:3663:128:4470:-332.632,0,-260.037	0/1:144:69,75:69:2451:75:2648:-195.217,0,-177.483	0/0:259:259,0:259:9104:0:0:0,-77.9668,-819.347	0/1:126:53,73:53:1872:73:2561:-192.807,0,-130.827	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:189:97,92:97:3435:92:3215:-232.675,0,-252.471	0/1:88:40,48:40:1415:48:1690:-125.894,0,-101.156	0/1:15:7,8:7:248:8:284:-21.3879,0,-18.1487	0/0:186:186,0:186:6603:0:0:0,-55.9916,-594.351	0/0:94:94,0:94:3347:0:0:0,-28.2968,-301.448	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:155:61,93:61:2183:93:3273:-248.22,0,-150.164	0/0:233:230,3:230:8120:3:108:0,-60.0648,-720.745	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:254:253,1:253:9003:1:36:0,-72.8633,-806.655	0/1:289:133,156:133:4703:156:5500:-408.129,0,-336.433	0/1:126:111,15:111:3934:15:527:-9.8304,0,-316.325	0/0:93:93,0:93:3286:0:0:0,-27.9958,-295.962	0/0:233:233,0:233:8233:0:0:0,-70.14,-740.972	0/0:179:176,3:176:6192:3:108:0,-43.8092,-547.308	0/0:99:99,0:99:3482:0:0:0,-29.802,-313.593	0/0:114:114,0:114:4016:0:0:0,-34.3174,-361.628	0/1:211:108,103:108:3787:103:3652:-265.366,0,-277.515	0/1:36:24,12:24:856:12:432:-28.3841,0,-66.524	0/1:127:69,58:69:2418:58:2056:-147.079,0,-179.644	0/0:113:111,2:111:3929:2:72:0,-27.1797,-346.881	0/0:263:262,0:262:9292:0:0:0,-78.8699,-835.887	0/1:202:93,109:93:3276:109:3840:-284.988,0,-234.251	0/1:219:106,110:106:3737:110:3857:-281.869,0,-271.184	0/0:164:164,0:164:5831:0:0:0,-49.3689,-524.904	0/1:14:5,9:5:171:9:324:-25.2914,0,-11.511	0/1:206:103,103:103:3674:103:3675:-268.941,0,-268.851	0/1:241:110,131:110:3923:131:4611:-342.608,0,-280.715	0/0:282:280,2:280:9957:2:72:0,-78.0537,-889.238	0/0:198:198,0:198:6941:0:0:0,-59.6039,-624.771	0/0:196:196,0:196:6929:0:0:0,-59.0019,-623.684	0/1:198:106,92:106:3714:92:3207:-229.251,0,-274.857	0/1:362:178,184:178:6205:184:6472:-473.6,0,-449.586	0/0:96:96,0:96:3351:0:0:0,-28.8989,-301.811	0/0:159:159,0:159:5519:0:0:0,-47.8638,-496.802	0/0:162:161,0:161:5674:0:0:0,-48.4658,-510.466	0/0:140:139,0:139:4914:0:0:0,-41.8432,-442.053	0/1:218:112,106:112:3947:106:3724:-269.737,0,-289.8	0/1:182:54,128:54:1908:128:4561:-355.869,0,-117.21	0/0:178:178,0:178:6228:0:0:0,-53.5833,-560.624	0/0:312:312,0:312:11023:0:0:0,-93.9214,-991.849
chr04	32120984	.	G	A	326275	PASS	AB=0.490161;ABP=9.59075;AC=140;AF=0.744681;AN=188;AO=12225;CIGAR=1X;DP=16245;DPB=16245;DPRA=0;EPP=26540.6;EPPR=8725.81;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9583;MQMR=59.9786;NS=94;NUMALT=1;ODDS=0.197023;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=433736;QR=142006;RO=4017;RPL=4867;RPP=1105.19;RPPR=336.123;RPR=7358;RUN=1;SAF=4868;SAP=1103.42;SAR=7357;SRF=1616;SRP=336.123;SRR=2401;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:40,34:40:1423:34:1220:-87.8306,0,-106.09	1/1:249:2,247:2:72:247:8731:-778.948,-68.1197,0	1/1:236:0,236:0:0:236:8368:-753.066,-71.0431,0	1/1:335:0,335:0:0:335:11896:-1070.5,-100.845,0	0/1:113:62,51:62:2183:51:1810:-129.164,0,-162.717	0/1:101:62,39:62:2196:39:1391:-95.0842,0,-167.499	0/1:209:105,104:105:3746:104:3681:-268.579,0,-274.425	1/1:289:2,287:2:72:287:10192:-910.376,-80.1609,0	1/1:219:0,219:0:0:219:7800:-702.032,-65.9256,0	1/1:174:0,174:0:0:174:6153:-553.84,-52.3792,0	0/1:166:66,100:66:2348:100:3563:-270.907,0,-161.609	0/1:228:119,109:119:4159:109:3859:-278.871,0,-305.856	1/1:236:0,236:0:0:236:8373:-753.577,-71.0431,0	1/1:211:0,211:0:0:211:7412:-665.899,-63.5173,0	1/1:176:0,176:0:0:176:6266:-564.036,-52.9813,0	0/1:140:67,73:67:2353:73:2611:-193.093,0,-169.884	0/1:194:99,95:99:3496:95:3354:-243.678,0,-256.452	1/1:166:1,165:1:36:165:5904:-527.87,-46.3727,0	0/1:81:35,46:35:1201:46:1636:-123.144,0,-84.0068	0/1:260:148,112:148:5226:112:3991:-281.113,0,-392.215	0/1:259:153,106:153:5436:106:3712:-256.126,0,-411.397	0/1:97:75,22:75:2625:22:792:-42.4058,0,-207.294	1/1:153:0,153:0:0:153:5430:-488.829,-46.0576,0	1/1:111:9,102:9:315:102:3643:-299.386,-4.7271,0	0/1:138:67,71:67:2400:71:2518:-185.329,0,-174.715	1/1:427:0,427:0:0:427:15200:-1367.72,-128.54,0	0/1:375:190,185:190:6685:185:6579:-479.305,0,-488.846	1/1:101:0,101:0:0:101:3584:-322.767,-30.404,0	1/1:327:0,327:0:0:327:11679:-1050.97,-98.4368,0	0/1:275:139,136:139:4932:136:4775:-347.126,0,-361.249	0/1:173:77,96:77:2732:96:3395:-253.688,0,-194.044	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:480:228,252:228:8090:252:8916:-657.853,0,-583.63	0/1:182:92,90:92:3193:90:3218:-235.051,0,-232.807	1/1:161:0,161:0:0:161:5675:-510.874,-48.4658,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:258:4,254:4:135:254:9028:-800.016,-65.1832,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:242:123,119:123:4366:119:4250:-309.828,0,-320.265	0/1:193:104,89:104:3638:89:3156:-226.162,0,-269.527	0/1:161:66,95:66:2259:95:3379:-255.861,0,-155.102	1/1:149:1,148:1:36:148:5274:-471.199,-41.2552,0	1/1:222:0,222:0:0:222:7889:-710.037,-66.8287,0	0/1:239:129,109:129:4592:109:3871:-276.732,0,-341.596	0/1:148:76,72:76:2696:72:2535:-183.833,0,-198.331	1/1:265:0,265:0:0:265:9494:-854.417,-79.773,0	0/1:125:70,55:70:2500:55:1960:-139.047,0,-187.623	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:188:88,99:88:3124:99:3525:-260.779,0,-224.733	0/1:91:48,42:48:1683:42:1474:-105.374,0,-124.447	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:196:0,196:0:0:196:6959:-626.379,-59.0019,0	1/1:94:0,94:0:0:94:3347:-301.447,-28.2968,0	1/1:14:0,14:0:0:14:489:-44.3389,-4.21442,0	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/1:158:95,63:95:3373:63:2238:-154.12,0,-256.224	1/1:235:3,232:3:108:232:8217:-729.471,-60.6669,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:258:1,257:1:36:257:9126:-817.719,-74.0675,0	0/1:285:154,131:154:5452:131:4659:-333.68,0,-405.017	0/1:126:14,112:14:500:112:3981:-320.549,0,-7.4064	1/1:97:0,97:0:0:97:3467:-312.243,-29.1999,0	1/1:242:0,242:0:0:242:8485:-763.657,-72.8493,0	1/1:186:3,183:3:108:183:6510:-575.912,-45.9164,0	1/1:105:0,105:0:0:105:3741:-336.887,-31.6082,0	1/1:114:0,114:0:0:114:4041:-363.878,-34.3174,0	0/1:211:102,109:102:3584:109:3856:-283.717,0,-259.251	0/1:36:12,24:12:419:24:855:-66.4331,0,-27.2056	0/1:131:57,74:57:2028:74:2616:-196.254,0,-143.358	1/1:121:2,119:2:72:119:4218:-372.928,-29.5879,0	1/1:276:0,276:0:0:276:9713:-874.116,-83.0843,0	0/1:201:110,91:110:3912:91:3239:-231.223,0,-291.766	0/1:226:114,112:114:4061:112:3997:-291.659,0,-297.083	1/1:170:0,170:0:0:170:6048:-544.424,-51.1751,0	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:207:103,104:103:3653:104:3717:-272.417,0,-266.659	0/1:245:134,111:134:4763:111:3958:-282.659,0,-355.076	1/1:286:2,284:2:72:284:10076:-899.941,-79.2579,0	1/1:208:0,208:0:0:208:7393:-665.421,-62.6142,0	1/1:195:0,195:0:0:195:6898:-620.884,-58.7009,0	0/1:201:91,110:91:3184:110:3806:-282.233,0,-226.277	0/1:365:184,181:184:6480:181:6432:-469.092,0,-473.416	1/1:99:0,99:0:0:99:3491:-314.4,-29.802,0	1/1:167:0,167:0:0:167:5807:-522.742,-50.272,0	1/1:162:0,162:0:0:162:5749:-517.528,-48.7669,0	1/1:142:0,142:0:0:142:5012:-451.228,-42.7463,0	0/1:219:107,112:107:3773:112:3943:-289.138,0,-273.802	0/1:183:127,56:127:4512:56:1999:-125.095,0,-351.161	1/1:186:0,186:0:0:186:6593:-593.453,-55.9916,0	1/1:316:0,316:0:0:316:11238:-1011.25,-95.1255,0
chr04	32121225	.	G	A	350735	PASS	AB=0.507374;ABP=7.07762;AC=141;AF=0.75;AN=188;AO=13081;CIGAR=1X;DP=17380;DPB=17380;DPRA=0;EPP=28390.7;EPPR=9312.11;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9833;MQMR=59.9979;NS=94;NUMALT=1;ODDS=7.86111;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=464917;QR=152260;RO=4291;RPL=6951;RPP=114.902;RPPR=7.38715;RPR=6130;RUN=1;SAF=6953;SAP=115.995;SAR=6128;SRF=2100;SRP=7.20092;SRR=2191;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:36,39:36:1266:39:1393:-103.089,0,-91.6614	1/1:58:0,58:0:0:58:2042:-184.049,-17.4597,0	1/1:197:0,197:0:0:197:7007:-630.694,-59.3029,0	1/1:463:0,463:0:0:463:16498:-1484.49,-139.377,0	0/1:94:49,45:49:1736:45:1616:-117.433,0,-128.228	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	0/1:204:127,77:127:4510:77:2752:-186.512,0,-344.658	1/1:151:0,151:0:0:151:5299:-477.044,-45.4555,0	1/1:126:0,126:0:0:126:4397:-395.892,-37.9298,0	1/1:232:0,232:0:0:232:8173:-735.589,-69.839,0	0/1:151:68,83:68:2412:83:2963:-221.448,0,-171.879	0/1:141:58,83:58:2042:83:2988:-226.706,0,-141.606	1/1:114:0,114:0:0:114:4051:-364.775,-34.3174,0	1/1:229:1,228:1:32:228:8127:-728.249,-65.7366,0	1/1:200:0,199:0:0:199:7047:-633.925,-59.905,0	0/1:184:93,91:93:3320:91:3222:-234.813,0,-243.629	0/1:50:30,20:30:1072:20:709:-49.0832,0,-81.741	1/1:40:0,40:0:0:40:1406:-126.833,-12.0412,0	0/1:40:18,22:18:640:22:792:-59.5645,0,-45.8881	0/1:835:398,437:398:14134:437:15500:-1143.35,0,-1020.48	0/1:432:245,187:245:8716:187:6625:-466.284,0,-654.392	0/1:169:104,65:104:3655:65:2312:-157.464,0,-278.278	1/1:169:2,167:2:72:167:5917:-525.806,-44.0373,0	1/1:149:11,138:11:392:138:4944:-409.459,-9.23341,0	0/1:189:77,112:77:2710:112:3990:-302.393,0,-187.248	1/1:546:0,546:0:0:546:19366:-1742.49,-164.362,0	0/1:502:245,256:245:8773:256:9127:-670.228,0,-638.381	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	1/1:491:1,490:1:36:490:17392:-1561.31,-144.207,0	0/1:199:92,107:92:3264:107:3805:-282.743,0,-234.078	0/1:189:89,100:89:3152:100:3537:-261.644,0,-227.011	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:39:18,21:18:644:21:711:-52.5602,0,-46.5504	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:457:226,231:226:8006:231:8238:-603.859,0,-582.993	0/1:195:98,97:98:3492:97:3472:-253.991,0,-255.792	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:390:9,381:9:324:381:13634:-1197.34,-87.8958,0	1/1:98:0,98:0:0:98:3508:-315.93,-29.5009,0	0/1:308:134,173:134:4742:173:6196:-465,0,-334.204	0/1:215:108,107:108:3814:107:3778:-275.496,0,-278.734	0/1:142:59,83:59:2096:83:2885:-217.139,0,-146.161	1/1:263:0,263:0:0:263:9307:-837.601,-79.1709,0	1/1:138:0,138:0:0:138:4877:-439.08,-41.5421,0	0/1:394:178,216:178:6317:216:7658:-570.646,0,-450.019	0/1:220:102,118:102:3627:118:4161:-308.339,0,-260.41	1/1:300:0,300:0:0:300:10657:-959.042,-90.309,0	0/1:248:116,132:116:4086:132:4669:-345.717,0,-293.271	0/1:22:9,13:9:309:13:460:-35.1127,0,-21.5181	0/1:177:94,83:94:3369:83:2980:-215.15,0,-250.141	0/1:72:40,32:40:1399:32:1125:-79.8819,0,-104.532	0/1:11:6,5:6:216:5:165:-11.8623,0,-16.4792	1/1:314:2,312:2:72:312:11120:-993.853,-87.6867,0	1/1:92:0,92:0:0:92:3250:-292.719,-27.6948,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:25:13,12:13:459:12:432:-31.6954,0,-34.1183	0/1:134:67,67:67:2404:67:2376:-173.758,0,-176.278	1/1:228:0,228:0:0:228:8103:-729.287,-68.6348,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:359:2,357:2:72:357:12719:-1137.7,-101.233,0	0/1:307:151,156:151:5311:156:5551:-407.299,0,-385.714	1/1:127:10,117:10:360:117:4172:-342.92,-5.48651,0	1/1:215:1,214:1:32:214:7637:-684.169,-61.5221,0	1/1:331:1,330:1:36:330:11716:-1050.71,-96.0427,0	1/1:183:1,182:1:36:182:6495:-581.036,-51.4902,0	1/1:86:0,86:0:0:86:3061:-275.719,-25.8886,0	1/1:64:0,64:0:0:64:2300:-207.232,-19.2659,0	0/1:170:87,83:87:3085:83:2924:-212.218,0,-226.703	0/1:52:23,29:23:824:29:1035:-77.8095,0,-58.8298	0/1:122:54,68:54:1913:68:2429:-182.138,0,-135.72	1/1:125:0,125:0:0:125:4463:-401.831,-37.6288,0	1/1:339:0,339:0:0:339:12058:-1084.94,-102.049,0	0/1:290:135,155:135:4813:155:5513:-408.997,0,-346.027	0/1:148:61,86:61:2161:86:3039:-229.127,0,-150.144	1/1:133:0,133:0:0:133:4708:-423.878,-40.037,0	0/1:28:16,12:16:572:12:423:-29.9762,0,-43.3846	0/1:220:100,120:100:3553:120:4285:-319.6,0,-253.752	0/1:101:46,55:46:1640:55:1922:-142.848,0,-117.485	1/1:373:4,369:4:144:369:13144:-1169.42,-98.9706,0	1/1:191:2,189:2:72:189:6701:-596.333,-50.66,0	1/1:183:1,182:1:36:182:6496:-581.126,-51.4902,0	0/1:202:101,100:101:3540:100:3554:-259.204,0,-257.944	0/1:368:175,193:175:6209:193:6896:-509.926,0,-448.133	1/1:35:1,33:1:36:33:1165:-101.557,-6.99657,0	1/1:90:1,89:1:36:89:3153:-280.395,-23.4944,0	1/1:84:1,83:1:36:83:2967:-263.663,-21.6882,0	1/1:128:0,126:0:0:126:4470:-402.111,-37.9298,0	0/1:209:99,110:99:3535:110:3929:-290.887,0,-255.444	0/1:239:171,68:171:6038:68:2406:-144.85,0,-471.582	1/1:263:1,262:1:36:262:9314:-834.628,-75.5726,0	1/1:279:1,278:1:36:278:9881:-885.411,-80.3891,0
chr04	32172921	.	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chr04	32236798	.	T	C	26645.3	PASS	AB=0.409533;ABP=302.788;AC=46;AF=0.244681;AN=188;AO=1757;CIGAR=1X;DP=9578;DPB=9578;DPRA=1.15038;EPP=3809.61;EPPR=16979.6;GTI=4;LEN=1;MEANALT=1.05263;MQM=60;MQMR=59.9838;NS=94;NUMALT=1;ODDS=0.251104;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62856;QR=280523;RO=7818;RPL=1756;RPP=3809.61;RPPR=16979.6;RPR=1;RUN=1;SAF=1757;SAP=3818.29;SAR=0;SRF=7818;SRP=16979.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:32,7:32:1152:7:252:-11.2888,0,-92.25	0/0:145:145,0:145:5208:0:0:0,-43.6493,-468.857	0/0:100:100,0:100:3585:0:0:0,-30.103,-322.844	0/0:238:238,0:238:8526:0:0:0,-71.6451,-767.333	0/1:79:55,24:55:1980:24:856:-53.5797,0,-154.693	0/1:72:38,34:38:1368:34:1220:-88.4326,0,-101.747	0/1:135:98,36:98:3520:36:1292:-75.8859,0,-276.311	0/0:197:197,0:197:7088:0:0:0,-59.3029,-637.705	0/0:128:128,0:128:4588:0:0:0,-38.5318,-413.084	0/0:128:128,0:128:4608:0:0:0,-38.5318,-414.881	0/1:23:9,14:9:320:14:500:-38.4125,0,-22.2187	0/1:62:36,26:36:1296:26:928:-65.1744,0,-98.2801	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/1:51:21,30:21:756:30:1063:-80.6283,0,-53.0147	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/1:265:142,123:142:5100:123:4412:-317.478,0,-379.365	0/1:151:93,58:93:3344:58:2088:-142.734,0,-255.711	0/1:138:51,87:51:1832:87:3111:-238.674,0,-123.619	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.868	0/0:215:211,4:211:7570:4:144:0,-51.4078,-668.022	0/1:92:55,37:55:1972:37:1324:-91.7673,0,-150.06	0/0:437:434,3:434:15559:3:108:0,-121.475,-1389.93	0/1:175:89,86:89:3200:86:3084:-225.107,0,-235.542	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:263:263,0:263:9440:0:0:0,-79.1709,-849.554	0/1:200:115,85:115:4128:85:3038:-213.443,0,-311.496	0/1:219:144,75:144:5172:75:2675:-175.07,0,-399.693	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:17:11,6:11:396:6:212:-14.3073,0,-30.8652	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:130:76,54:76:2719:54:1921:-134.031,0,-205.819	0/1:292:210,82:210:7528:82:2922:-175.315,0,-589.587	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:188:185,3:185:6656:3:108:0,-46.5185,-589.038	0/0:20:19,1:19:684:1:36:0,-2.42232,-58.2921	0/1:128:80,48:80:2872:48:1728:-117.273,0,-220.185	0/1:56:29,27:29:1044:27:968:-70.5797,0,-77.4171	0/1:39:13,26:13:468:26:932:-72.4587,0,-30.7195	0/0:108:106,1:106:3793:1:36:0,-28.9718,-337.968	0/0:139:139,0:139:4988:0:0:0,-41.8432,-449.067	0/1:150:90,60:90:3204:60:2152:-148.793,0,-243.39	0/1:93:49,43:49:1745:43:1544:-111.199,0,-129.278	0/0:207:207,0:207:7436:0:0:0,-62.3132,-669.281	0/1:130:71,59:71:2556:59:2108:-150.855,0,-191.156	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:120:87,33:87:3109:33:1184:-70.7447,0,-243.907	0/1:41:23,18:23:824:18:648:-46.3097,0,-62.1411	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/0:154:153,1:153:5500:1:36:0,-42.7603,-491.525	0/0:75:75,0:75:2651:0:0:0,-22.5772,-238.832	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:78:51,27:51:1821:27:968:-63.957,0,-140.689	0/0:102:100,2:100:3588:2:72:0,-23.8683,-316.289	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:232:232,0:232:8317:0:0:0,-69.839,-748.534	0/1:226:136,90:136:4892:90:3215:-221.54,0,-372.397	0/0:120:115,5:115:4132:5:180:0,-19.5715,-355.51	0/0:105:105,0:105:3747:0:0:0,-31.6081,-337.424	0/0:246:245,1:245:8782:1:36:0,-70.4551,-786.764	0/0:109:108,1:108:3888:1:36:0,-29.214,-346.514	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/1:67:34,33:34:1224:33:1167:-85.1674,0,-90.298	0/1:17:15,2:15:532:2:72:-1.71921,0,-43.0956	0/1:133:78,55:78:2808:55:1972:-137.718,0,-212.922	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:251:251,0:251:9016:0:0:0,-75.5585,-811.412	0/1:144:116,28:116:4172:28:993:-46.3342,0,-332.312	0/1:92:56,36:56:2008:36:1284:-88.1687,0,-153.294	0/0:110:109,1:109:3912:1:36:0,-29.515,-348.674	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	0/1:76:43,33:43:1535:33:1180:-83.6298,0,-115.564	0/1:139:82,57:82:2929:57:2035:-141.578,0,-222	0/0:215:215,0:215:7724:0:0:0,-64.7214,-695.189	0/0:92:90,2:90:3227:2:72:0,-20.858,-283.814	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:73:34,39:34:1224:39:1376:-102.161,0,-88.4919	0/1:104:56,48:56:2012:48:1724:-124.138,0,-150.046	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:40:17,23:17:597:23:828:-62.8029,0,-42.0149	0/1:42:12,30:12:432:30:1076:-84.5096,0,-26.5779	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.159
chr04	32236865	.	A	T	180415	PASS	AB=0.593702;ABP=349.318;AC=144;AF=0.765957;AN=188;AO=8421;CIGAR=1X;DP=10289;DPB=10289;DPRA=0;EPP=18289;EPPR=4059.32;GTI=4;LEN=1;MEANALT=1;MQM=59.9662;MQMR=59.9946;NS=94;NUMALT=1;ODDS=1.12184;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=301614;QR=66836;RO=1868;RPL=0;RPP=18289;RPPR=4059.32;RPR=8421;RUN=1;SAF=0;SAP=18289;SAR=8421;SRF=0;SRP=4059.32;SRR=1868;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:111:35,76:35:1248:76:2724:-211.989,0,-79.2105	1/1:66:0,66:0:0:66:2348:-211.545,-19.868,0	1/1:394:0,394:0:0:394:14072:-1266.24,-118.606,0	1/1:285:0,285:0:0:285:10229:-920.304,-85.7936,0	0/1:105:43,62:43:1548:62:2213:-167.825,0,-108.005	0/1:43:15,28:15:540:28:1004:-77.7316,0,-35.9922	0/1:63:38,25:38:1364:25:892:-61.6348,0,-104.096	1/1:247:4,243:4:129:243:8701:-771.152,-62.4267,0	1/1:144:0,144:0:0:144:5171:-465.528,-43.3483,0	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	0/1:16:7,9:7:243:9:324:-24.6894,0,-17.391	0/1:51:25,26:25:896:26:936:-69.2069,0,-65.6078	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:35:0,35:0:0:35:1252:-112.982,-10.5361,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	0/1:180:78,102:78:2783:102:3672:-276.496,0,-196.525	0/1:232:82,150:82:2931:150:5369:-413.501,0,-194.185	0/1:155:70,85:70:2500:85:3048:-227.89,0,-178.593	1/1:210:2,208:2:72:208:7455:-664.156,-56.3796,0	1/1:100:9,91:9:324:91:3261:-264.203,-0.597146,0	0/1:109:47,62:47:1684:62:2228:-167.972,0,-119.035	1/1:390:0,390:0:0:390:13987:-1258.49,-117.402,0	0/1:230:95,135:95:3396:135:4833:-365.886,0,-236.619	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:303:0,303:0:0:303:10853:-976.667,-91.2121,0	0/1:172:64,108:64:2296:108:3861:-295.907,0,-155.124	0/1:219:82,137:82:2940:137:4897:-374.955,0,-198.908	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	0/1:37:15,22:15:540:22:792:-60.4676,0,-37.7984	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:88:37,51:37:1328:51:1832:-138.67,0,-93.3316	0/1:176:58,118:58:2072:118:4236:-328.437,0,-133.769	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:167:0,167:0:0:167:5992:-539.383,-50.272,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:261:99,162:99:3547:162:5808:-444.264,0,-240.869	0/1:25:14,11:14:504:11:392:-28.0943,0,-38.1723	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	1/1:204:0,204:0:0:204:7276:-654.889,-61.4101,0	1/1:184:0,184:0:0:184:6604:-594.248,-55.3895,0	0/1:215:100,115:100:3583:115:4136:-307.687,0,-257.955	0/1:130:58,72:58:2084:72:2584:-193.675,0,-148.696	1/1:167:0,167:0:0:167:5973:-537.648,-50.272,0	0/1:139:57,82:57:2040:82:2918:-221.009,0,-142.029	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:186:77,109:77:2760:109:3912:-296.281,0,-192.649	0/1:65:28,37:28:996:37:1324:-99.8951,0,-70.3879	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:153:0,153:0:0:153:5473:-492.589,-46.0576,0	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	1/1:40:0,40:0:0:40:1426:-128.566,-12.0412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:97:36,61:36:1292:61:2196:-168.705,0,-87.3839	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:230:0,230:0:0:230:8238:-741.424,-69.2369,0	0/1:262:99,163:99:3540:163:5852:-447.92,0,-239.937	1/1:63:3,60:3:108:60:2160:-184.592,-8.88972,0	1/1:105:0,105:0:0:105:3756:-338.24,-31.6082,0	1/1:299:4,295:4:140:295:10545:-935.989,-77.0634,0	1/1:231:0,231:0:0:231:8281:-745.296,-69.5379,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:33:21,12:21:743:12:422:-28.3803,0,-57.2593	0/1:16:3,13:3:108:13:460:-36.9189,0,-5.25869	0/1:198:63,135:63:2260:135:4837:-375.322,0,-144.059	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	1/1:274:1,273:1:36:273:9743:-873.112,-78.8839,0	0/1:220:84,136:84:3015:136:4879:-373.034,0,-205.353	0/1:140:51,89:51:1828:89:3196:-245.718,0,-122.657	1/1:142:0,142:0:0:142:5088:-458.061,-42.7463,0	0/1:23:5,18:5:180:18:633:-50.3714,0,-9.62837	0/1:118:42,76:42:1504:76:2718:-209.341,0,-100.133	0/1:137:51,86:51:1824:86:3048:-233.308,0,-123.2	1/1:291:0,291:0:0:291:10445:-939.962,-87.5997,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:72:40,32:40:1436:32:1144:-81.5954,0,-107.864	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:12:0,12:0:0:12:413:-37.4978,-3.61236,0	0/1:49:32,17:32:1130:17:612:-40.663,0,-87.2565	0/1:41:32,9:32:1116:9:320:-16.8001,0,-88.4014	1/1:190:0,190:0:0:190:6783:-610.525,-57.1957,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0
chr04	32243815	.	GTG	ATC,GTC	169892	PASS	AB=0.448985,0.543562;ABP=90.968,67.1449;AC=139,45;AF=0.755435,0.244565;AN=184;AO=5919,2145;CIGAR=1X1M1X,2M1X;DP=8105;DPB=8105;DPRA=25.7079,1.15091;EPP=12769.2,4540.01;EPPR=8.59409;GTI=1;LEN=3,1;MEANALT=1.85556,2.26415;MQM=59.8816,59.786;MQMR=52;NS=92;NUMALT=2;ODDS=1.88508;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=207607,75279;QR=404;RO=14;RPL=10,14;RPP=12769.2,4540.01;RPPR=8.59409;RPR=5909,2131;RUN=1,1;SAF=5919,2145;SAP=12856,4660.82;SAR=0,0;SRF=14;SRP=33.4109;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:55:0,30,25:0:0:30,25:1059,871:-157.21,-70.9875,-61.9566,-86.5721,0,-79.0464	1/1:81:0,80,0:0:0:80,0:2806,0:-252.421,-24.0824,0,-252.421,-24.0824,-252.421	1/1:131:0,131,0:0:0:131,0:4590,0:-413.274,-39.4349,0,-413.274,-39.4349,-413.274	1/1:128:0,128,0:0:0:128,0:4451,0:-400.723,-38.5318,0,-400.723,-38.5318,-400.723	1/2:62:0,22,40:0:0:22,40:759,1432:-178.42,-116.766,-110.143,-62.0034,0,-49.9622	1/2:23:1,9,13:1:28:9,13:312,468:-61.1001,-36.0476,-35.5513,-23.2068,0,-21.5055	1/2:110:1,42,67:1:27:42,67:1479,2354:-309.676,-189.57,-179.035,-118.381,0,-100.32	1/1:139:0,139,0:0:0:139,0:4904,0:-441.472,-41.8432,0,-441.472,-41.8432,-441.472	1/1:114:0,112,1:0:0:112,1:3880,36:-348.997,-33.7154,0,-346.059,-30.7348,-345.758	1/1:99:0,99,0:0:0:99,0:3451,0:-310.804,-29.802,0,-310.804,-29.802,-310.804	1/2:43:0,22,21:0:0:22,21:765,739:-122.704,-60.5107,-53.8881,-62.5431,0,-56.2215	1/2:56:0,31,24:0:0:31,24:1095,843:-157.78,-68.6038,-59.2719,-89.1683,0,-81.9436	1/1:58:0,58,0:0:0:58,0:2047,0:-184.492,-17.4597,0,-184.492,-17.4597,-184.492	1/1:66:0,65,0:0:0:65,0:2298,0:-206.796,-19.567,0,-206.796,-19.567,-206.796	1/1:60:0,60,0:0:0:60,0:2142,0:-193.048,-18.0618,0,-193.048,-18.0618,-193.048	1/1:46:0,46,0:0:0:46,0:1611,0:-145.277,-13.8474,0,-145.277,-13.8474,-145.277	1/2:49:0,25,24:0:0:25,24:886,856:-142.314,-70.1364,-62.6106,-72.5327,0,-65.308	1/1:35:0,35,0:0:0:35,0:1237,0:-111.633,-10.5361,0,-111.633,-10.5361,-111.633	1/2:50:0,30,20:0:0:30,20:1078,712:-146.331,-58.3861,-49.3552,-88.3023,0,-82.2817	1/2:152:0,80,71:0:0:80,71:2805,2471:-429.161,-200.911,-176.829,-228.239,0,-206.866	1/2:146:0,62,84:0:0:62,84:2157,2944:-415.29,-239.909,-221.245,-175.73,0,-150.443	1/2:143:0,36,107:0:0:36,107:1242,3746:-406.03,-305.133,-294.296,-101.243,0,-69.0326	1/1:42:0,42,0:0:0:42,0:1491,0:-134.484,-12.6433,0,-134.484,-12.6433,-134.484	1/1:135:0,129,6:0:0:129,6:4540,212:-407.088,-38.8329,0,-389.822,-21.2143,-388.016	1/2:55:0,32,23:0:0:32,23:1117,820:-158.047,-67.1988,-57.5659,-91.2018,0,-84.2781	1/1:252:0,250,0:0:0:250,0:8822,0:-793.538,-75.2575,0,-793.538,-75.2575,-793.538	1/2:168:1,84,83:1:27:84,83:2938,2906:-473.061,-234.39,-211.232,-236.922,0,-214.065	1/1:25:0,24,1:0:0:24,1:839,36:-75.4661,-7.22472,0,-72.5283,-3.92748,-72.2273	1/1:215:0,215,0:0:0:215,0:7562,0:-680.628,-64.7215,0,-680.628,-64.7215,-680.628	1/2:108:0,41,66:0:0:41,66:1420,2308:-303.176,-187.772,-175.43,-115.411,0,-95.5427	1/2:153:0,66,86:0:0:66,86:2300,2985:-429.766,-242.722,-222.854,-187.12,0,-161.232	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/2:17:0,9,8:0:0:9,8:312,288:-49.2113,-23.8592,-21.1499,-25.7057,0,-23.2975	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/1:3:0,3,0:0:0:3,0:100,0:-9.32986,-0.90309,0,-9.32986,-0.90309,-9.32986	1/1:6:0,6,0:0:0:6,0:210,0:-19.2423,-1.80618,0,-19.2423,-1.80618,-19.2423	1/2:170:1,78,89:1:28:78,89:2760,3078:-472.334,-247.825,-226.562,-222.668,0,-198.094	1/2:192:0,85,105:0:0:85,105:2958,3710:-542.65,-302.144,-276.557,-240.521,0,-208.913	1/1:75:0,74,0:0:0:74,0:2613,0:-234.923,-22.2762,0,-234.923,-22.2762,-234.923	.:.:.:.:.:.:.:.	1/1:69:0,69,0:0:0:69,0:2435,0:-219.395,-20.7711,0,-219.395,-20.7711,-219.395	1/1:23:0,22,1:0:0:22,1:782,36:-70.3434,-6.62266,0,-67.4058,-3.32542,-67.1047	1/2:149:2,48,99:2:64:48,99:1677,3458:-411.956,-276.153,-266.859,-131.278,0,-106.631	1/2:60:0,29,31:0:0:29,31:1031,1084:-172.558,-88.5369,-79.8071,-84.3738,0,-75.0419	1/2:52:2,31,19:2:67:31,19:1046,635:-130.164,-45.9924,-42.0772,-79.3579,0,-79.0549	1/1:98:0,95,2:0:0:95,2:3309,72:-297.668,-28.5979,0,-291.793,-22.723,-291.191	1/1:74:0,73,1:0:0:73,1:2515,36:-226.242,-21.9752,0,-223.304,-18.6779,-223.003	1/2:145:1,54,90:1:27:54,90:1858,3177:-407.264,-256.675,-242.535,-148.852,0,-123.875	1/2:114:0,50,63:0:0:50,63:1753,2208:-322.414,-179.764,-164.713,-142.747,0,-123.783	1/1:102:0,101,0:0:0:101,0:3568,0:-320.54,-30.404,0,-320.54,-30.404,-320.54	1/2:144:0,65,79:0:0:65,79:2298,2761:-412.11,-224.948,-205.381,-187.514,0,-163.732	.:.:.:.:.:.:.:.	1/2:114:0,51,63:0:0:51,63:1763,2240:-326.146,-182.899,-167.547,-143.596,0,-124.631	1/2:36:0,12,24:0:0:12,24:410,844:-102.324,-69.0542,-65.4418,-33.6149,0,-26.3902	1/2:5:0,1,4:0:0:1,4:34,140:-14.4965,-11.7405,-11.4394,-3.09788,0,-1.89376	1/1:66:0,66,0:0:0:66,0:2293,0:-206.63,-19.868,0,-206.63,-19.868,-206.63	1/1:29:0,29,0:0:0:29,0:1014,0:-91.5701,-8.72987,0,-91.5701,-8.72987,-91.5701	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:75:1,23,51:1:28:23,51:815,1808:-211.284,-145.192,-140.448,-64.2896,0,-51.1156	1/1:92:0,92,0:0:0:92,0:3223,0:-290.013,-27.6948,0,-290.013,-27.6948,-290.013	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:149:0,149,0:0:0:149,0:5197,0:-467.874,-44.8535,0,-467.874,-44.8535,-467.874	1/2:166:0,68,98:0:0:68,98:2354,3469:-473.467,-282.166,-261.696,-191.649,0,-162.148	1/1:59:0,58,1:0:0:58,1:2014,32:-181.208,-17.4597,0,-178.63,-14.5615,-178.329	1/1:62:0,62,0:0:0:62,0:2206,0:-198.802,-18.6639,0,-198.802,-18.6639,-198.802	1/1:402:0,394,8:0:0:394,8:13709,269:-1233.28,-118.606,0,-1211.65,-96.6378,-1209.24	1/1:71:0,70,1:0:0:70,1:2439,36:-219.398,-21.0721,0,-216.46,-17.7749,-216.159	1/1:14:0,14,0:0:0:14,0:494,0:-44.7928,-4.21442,0,-44.7928,-4.21442,-44.7928	1/1:91:0,91,0:0:0:91,0:3199,0:-288.135,-27.3937,0,-288.135,-27.3937,-288.135	1/2:98:0,51,46:0:0:51,46:1800,1628:-279.261,-132.69,-117.337,-146.652,0,-132.804	1/2:13:1,6,6:1:28:6,6:216,216:-32.8091,-15.4856,-15.8868,-15.4856,0,-15.8868	1/2:214:0,106,105:0:0:106,105:3744,3652:-601.72,-296.817,-264.908,-304.92,0,-273.311	1/1:42:0,42,0:0:0:42,0:1460,0:-131.693,-12.6433,0,-131.693,-12.6433,-131.693	1/1:202:0,201,0:0:0:201,0:7010,0:-630.616,-60.507,0,-630.616,-60.507,-630.616	1/2:132:1,64,67:1:21:64,67:2246,2342:-371.506,-189.023,-171.344,-181.336,0,-162.753	1/2:115:1,62,51:1:31:62,51:2153,1778:-316.875,-142.154,-125.978,-172.585,0,-159.721	1/1:72:0,71,0:0:0:71,0:2491,0:-224.162,-21.3731,0,-224.162,-21.3731,-224.162	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/2:86:0,40,46:0:0:40,46:1434,1604:-247.749,-130.799,-118.758,-117.304,0,-103.457	1/2:72:1,32,39:1:28:32,39:1132,1372:-202.219,-110.318,-102.2,-90.8342,0,-80.6078	1/1:254:0,253,0:0:0:253,0:8926,0:-803.111,-76.1606,0,-803.111,-76.1606,-803.111	1/1:102:0,102,0:0:0:102,0:3595,0:-323.744,-30.7051,0,-323.744,-30.7051,-323.744	1/1:45:0,44,1:0:0:44,1:1557,36:-140.061,-13.2453,0,-137.124,-9.94808,-136.823	1/2:68:0,29,39:0:0:29,39:1007,1384:-194.976,-113.119,-104.389,-82.2076,0,-70.4674	1/2:136:0,72,63:0:0:72,63:2555,2195:-386.655,-178.488,-156.814,-208.158,0,-189.193	1/1:42:0,42,0:0:0:42,0:1472,0:-132.773,-12.6433,0,-132.773,-12.6433,-132.773	1/1:64:0,64,0:0:0:64,0:2281,0:-205.552,-19.2659,0,-205.552,-19.2659,-205.552	1/1:47:0,47,0:0:0:47,0:1661,0:-149.771,-14.1484,0,-149.771,-14.1484,-149.771	1/1:38:0,38,0:0:0:38,0:1352,0:-121.958,-11.4391,0,-121.958,-11.4391,-121.958	1/2:57:0,32,25:0:0:32,25:1131,892:-165.153,-73.0446,-63.4116,-92.4639,0,-84.9382	1/2:81:0,35,46:0:0:35,46:1217,1628:-231.907,-132.961,-122.425,-99.2955,0,-85.4481	1/1:93:0,92,0:0:0:92,0:3253,0:-292.777,-27.6948,0,-292.777,-27.6948,-292.777	1/1:78:0,78,0:0:0:78,0:2758,0:-248.191,-23.4803,0,-248.191,-23.4803,-248.191
chr04	32247375	.	A	G	49720.8	PASS	AB=0.501715;ABP=3.15923;AC=44;AF=0.234043;AN=188;AO=2954;CIGAR=1X;DP=13059;DPB=13059;DPRA=1.30122;EPP=6382.84;EPPR=21466.3;GTI=0;LEN=1;MEANALT=1.03774;MQM=59.9749;MQMR=59.9795;NS=94;NUMALT=1;ODDS=7.94313;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105478;QR=361783;RO=10103;RPL=2950;RPP=6382.84;RPPR=21466.3;RPR=4;RUN=1;SAF=0;SAP=6417.54;SAR=2954;SRF=0;SRP=21941.4;SRR=10103;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:38,36:38:1360:36:1267:-92.054,0,-100.424	0/0:207:207,0:207:7417:0:0:0,-62.3132,-667.527	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.031	0/0:295:295,0:295:10545:0:0:0,-88.8038,-948.965	0/1:174:85,89:85:3052:89:3176:-233.686,0,-222.53	0/1:111:59,52:59:2120:52:1864:-134.625,0,-157.654	0/1:205:97,108:97:3476:108:3870:-286.783,0,-251.34	0/0:312:312,0:312:11174:0:0:0,-93.9214,-1005.54	0/0:274:274,0:274:9798:0:0:0,-82.4822,-881.766	0/0:150:149,1:149:5301:1:36:0,-41.5562,-473.435	0/1:51:20,31:20:720:31:1099:-83.8669,0,-49.7762	0/1:98:52,46:52:1848:46:1636:-118.016,0,-137.099	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:126:57,69:57:2052:69:2444:-182.271,0,-147.022	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:34:16,18:16:576:18:644:-48.0556,0,-41.94	0/1:281:152,129:152:5447:129:4580:-327.777,0,-405.768	0/1:265:136,129:136:4843:129:4604:-334.753,0,-356.242	0/1:103:38,65:38:1364:65:2320:-178.054,0,-92.0546	0/0:148:148,0:148:5295:0:0:0,-44.5524,-476.314	0/0:228:222,6:222:7980:6:216:0,-48.8443,-698.427	0/1:97:48,49:48:1724:49:1747:-128.314,0,-126.245	0/0:514:513,1:513:18364:1:36:0,-151.131,-1648.63	0/1:257:126,131:126:4516:131:4674:-343.457,0,-329.243	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:324:323,1:323:11539:1:36:0,-93.9354,-1034.79	0/1:247:129,118:129:4612:118:4210:-304.726,0,-340.89	0/1:150:75,75:75:2687:75:2688:-197.01,0,-196.915	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:215:97,118:97:3479:118:4191:-312.65,0,-248.599	0/1:198:103,95:103:3681:95:3392:-245.887,0,-271.888	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:246:233,13:233:8329:13:460:0,-32.318,-707.879	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:292:129,162:129:4611:162:5772:-431.636,0,-327.194	0/1:115:51,64:51:1836:64:2291:-171.832,0,-130.902	0/1:93:50,43:50:1800:43:1532:-110.177,0,-134.286	0/0:136:136,0:136:4875:0:0:0,-40.9401,-438.901	0/0:144:144,0:144:5172:0:0:0,-43.3483,-465.618	0/1:264:137,127:137:4919:127:4535:-328.846,0,-363.387	0/1:146:78,68:78:2800:68:2420:-174.104,0,-208.289	0/0:250:250,0:250:8968:0:0:0,-75.2575,-807.098	0/1:166:99,67:99:3532:67:2400:-166.286,0,-268.119	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:118:66,52:66:2376:52:1872:-133.238,0,-178.576	0/1:94:49,45:49:1760:45:1608:-116.713,0,-130.331	0/1:20:5,15:5:176:15:536:-42.5542,0,-10.1644	0/0:174:174,0:174:6210:0:0:0,-52.3792,-558.995	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:121:54,67:54:1940:67:2404:-180.192,0,-138.452	0/0:107:106,1:106:3800:1:36:0,-28.6119,-338.599	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:320:320,0:320:11469:0:0:0,-96.3296,-1032.08	0/1:203:112,90:112:4005:90:3232:-230.081,0,-299.618	0/0:149:146,3:146:5217:3:108:0,-34.7792,-459.593	0/0:162:162,0:162:5800:0:0:0,-48.7669,-522.114	0/0:404:403,1:403:14435:1:36:0,-118.018,-1295.3	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:114:114,0:114:4071:0:0:0,-34.3174,-366.577	0/1:87:34,53:34:1211:53:1891:-144.278,0,-83.1059	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/1:84:44,40:44:1580:40:1425:-103.261,0,-117.205	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:247:247,0:247:8786:0:0:0,-74.3544,-790.73	0/1:226:96,130:96:3452:130:4656:-351.169,0,-242.859	0/1:216:106,110:106:3804:110:3908:-286.701,0,-277.534	0/0:236:235,1:235:8427:1:36:0,-67.4448,-754.206	0/1:26:11,15:11:396:15:532:-40.3863,0,-28.1477	0/1:190:99,91:99:3556:91:3260:-236.425,0,-263.022	0/1:150:88,62:88:3159:62:2223:-155.175,0,-239.379	0/0:372:372,0:372:13243:0:0:0,-111.983,-1191.67	0/0:114:114,0:114:4100:0:0:0,-34.3174,-369.183	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:131:75,56:75:2683:56:2016:-142.278,0,-202.279	0/1:200:112,88:112:4011:88:3151:-223.608,0,-300.972	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:63:35,28:35:1260:28:1004:-71.711,0,-94.7406	0/1:88:28,60:28:992:60:2148:-167.097,0,-63.1038	0/0:215:215,0:215:7712:0:0:0,-64.7214,-694.111	0/0:132:132,0:132:4735:0:0:0,-39.736,-426.307
chr04	32255151	.	TGG	AGC,TGC	229703	PASS	AB=0.480925,0.514377;ABP=19.8275,12.5634;AC=146,40;AF=0.784946,0.215054;AN=186;AO=8042,2771;CIGAR=1X1M1X,2M1X;DP=10861;DPB=10861.7;DPRA=0,1.48483;EPP=17457.3,6011.48;EPPR=0;GTI=4;LEN=3,1;MEANALT=2.01075,2.53846;MQM=59.8398,59.9668;MQMR=0;NS=93;NUMALT=2;ODDS=0.697978;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=1;QA=283795,99193;QR=0;RO=0;RPL=1,1;RPP=17457.3,6011.48;RPPR=0;RPR=8041,2770;RUN=1,1;SAF=0,0;SAP=17466,6020.16;SAR=8042,2771;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:83:0,83,0:0:0:83,0:2911,0:-262.209,-24.9855,0,-262.209,-24.9855,-262.209	1/1:77:0,77,0:0:0:77,0:2713,0:-244.413,-23.1793,0,-244.413,-23.1793,-244.413	1/1:285:0,285,0:0:0:285,0:10038,0:-903.285,-85.7936,0,-903.285,-85.7936,-903.285	1/1:242:0,242,0:0:0:242,0:8567,0:-771.028,-72.8493,0,-771.028,-72.8493,-771.028	1/2:106:0,61,44:0:0:61,44:2157,1580:-304.506,-128.886,-110.524,-175.616,0,-162.371	1/2:76:0,44,32:0:0:44,32:1565,1139:-220.717,-93.1854,-79.9401,-127.887,0,-118.254	1/2:113:0,61,51:0:0:61,51:2134,1805:-320.627,-147.018,-128.655,-173.602,0,-158.249	1/1:152:0,150,1:0:0:150,1:5305,36:-476.439,-45.1545,0,-473.502,-42.217,-473.201	1/1:135:0,134,0:0:0:134,0:4695,0:-422.352,-40.338,0,-422.352,-40.338,-422.352	1/1:73:0,73,0:0:0:73,0:2601,0:-234.339,-21.9752,0,-234.339,-21.9752,-234.339	1/2:55:0,24,31:0:0:24,31:838,1116:-159.577,-91.4198,-84.195,-68.5106,0,-59.1787	1/2:112:0,50,61:0:0:50,61:1775,2184:-322.724,-178.103,-163.052,-144.617,0,-126.254	1/1:84:0,84,0:0:0:84,0:2972,0:-267.713,-25.2865,0,-267.713,-25.2865,-267.713	1/1:60:0,60,0:0:0:60,0:2110,0:-190.112,-18.0618,0,-190.112,-18.0618,-190.112	1/1:81:0,81,0:0:0:81,0:2869,0:-258.414,-24.3834,0,-258.414,-24.3834,-258.414	1/1:64:0,64,0:0:0:64,0:2286,0:-206.003,-19.2659,0,-206.003,-19.2659,-206.003	1/2:52:0,29,23:0:0:29,23:1008,824:-149.431,-67.4898,-58.7599,-82.2944,0,-75.3707	1/1:29:0,28,0:0:0:28,0:986,0:-88.1213,-8.42884,0,-88.1213,-8.42884,-88.1213	1/2:32:0,14,17:0:0:14,17:498,608:-89.6669,-49.5748,-45.3604,-40.0871,0,-34.9696	1/2:423:0,208,212:0:0:208,212:7335,7591:-1216.35,-619.119,-556.504,-597.295,0,-533.477	1/2:192:0,91,101:0:0:91,101:3213,3612:-556.496,-294.882,-267.488,-261.968,0,-231.564	1/2:357:0,115,239:0:0:115,239:4043,8596:-1030.46,-701.374,-666.755,-329.131,0,-257.185	1/1:210:0,209,0:0:0:209,0:7421,0:-667.726,-62.9153,0,-667.726,-62.9153,-667.726	1/1:151:0,141,10:0:0:141,10:4999,356:-449.665,-42.4452,0,-420.65,-13.0743,-417.64	1/2:126:0,58,68:0:0:58,68:2037,2436:-364.81,-199.025,-181.566,-166.139,0,-145.669	1/1:224:0,223,0:0:0:223,0:7856,0:-706.794,-67.1297,0,-706.794,-67.1297,-706.794	1/2:348:0,182,164:0:0:182,164:6393,5881:-1000,-479.678,-424.891,-520.327,0,-470.958	1/1:45:0,44,0:0:0:44,0:1547,0:-139.161,-13.2453,0,-139.161,-13.2453,-139.161	1/1:360:0,353,1:0:0:353,1:12485,36:-1123.09,-106.264,0,-1120.15,-103.321,-1119.85	1/2:125:0,60,65:0:0:60,65:2103,2328:-361.327,-190.212,-172.15,-171.469,0,-151.902	1/2:78:0,42,36:0:0:42,36:1489,1284:-226.331,-105.026,-92.3831,-121.66,0,-110.823	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:11:0,5,5:0:0:5,5:167,180:-28.1766,-14.6871,-13.1819,-13.4795,0,-11.9744	1/1:10:0,10,0:0:0:10,0:360,0:-32.7434,-3.0103,0,-32.7434,-3.0103,-32.7434	1/2:198:0,105,93:0:0:105,93:3746,3339:-578.071,-272.73,-241.122,-305.699,0,-277.703	1/2:122:0,52,70:0:0:52,70:1846,2497:-354.319,-203.909,-188.256,-150.765,0,-129.693	1/1:46:0,45,0:0:0:45,0:1594,0:-143.388,-13.5464,0,-143.388,-13.5464,-143.388	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:193:0,191,1:0:0:191,1:6728,36:-605.242,-57.4967,0,-602.305,-54.5593,-602.004	1/1:31:0,31,0:0:0:31,0:1095,0:-98.8589,-9.33193,0,-98.8589,-9.33193,-98.8589	1/2:242:0,139,102:0:0:139,102:4874,3660:-695.102,-298.55,-256.707,-396.567,0,-365.862	1/2:67:0,34,33:0:0:34,33:1202,1172:-193.749,-95.8535,-85.6185,-98.2501,0,-88.3161	1/2:66:0,33,33:0:0:33,33:1168,1188:-192.427,-97.2946,-87.3606,-95.4895,0,-85.5555	1/1:151:0,149,2:0:0:149,2:5258,72:-472.983,-44.8535,0,-467.108,-38.6188,-466.506	1/1:177:0,176,0:0:0:176,0:6188,0:-556.66,-52.9813,0,-556.66,-52.9813,-556.66	1/2:204:0,106,98:0:0:106,98:3741,3516:-591.775,-287.148,-255.239,-304.982,0,-275.481	1/2:130:0,64,65:0:0:64,65:2250,2312:-371.635,-188.49,-169.224,-183.216,0,-163.649	1/1:109:0,109,0:0:0:109,0:3843,0:-346.04,-32.8123,0,-346.04,-32.8123,-346.04	1/2:174:0,95,79:0:0:95,79:3359,2804:-502.39,-228.817,-200.219,-273.927,0,-250.145	.:.:.:.:.:.:.:.	1/2:178:0,73,105:0:0:73,105:2599,3771:-519.805,-307.979,-286.004,-212.183,0,-180.575	1/2:83:0,31,52:0:0:31,52:1083,1849:-239.127,-151.034,-141.703,-88.4437,0,-72.7902	1/2:18:0,5,13:0:0:5,13:165,468:-51.8764,-38.5463,-37.0411,-13.6683,0,-9.75495	1/1:190:0,189,0:0:0:189,0:6624,0:-595.97,-56.8947,0,-595.97,-56.8947,-595.97	1/1:69:0,68,0:0:0:68,0:2406,0:-216.507,-20.47,0,-216.507,-20.47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chr04	32260138	.	G	A	25222.1	PASS	AB=0.372418;ABP=680.651;AC=44;AF=0.234043;AN=188;AO=1801;CIGAR=1X;DP=11153;DPB=11153;DPRA=1.23164;EPP=3905.15;EPPR=20301.9;GTI=3;LEN=1;MEANALT=1.07273;MQM=59.9861;MQMR=59.998;NS=94;NUMALT=1;ODDS=0.0325473;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63866;QR=334349;RO=9348;RPL=1801;RPP=3913.83;RPPR=20301.9;RPR=0;RUN=1;SAF=1;SAP=3905.15;SAR=1800;SRF=0;SRP=20301.9;SRR=9348;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:167:167,0:167:5945:0:0:0,-50.272,-535.114	0/0:153:152,1:152:5442:1:36:0,-42.4593,-486.309	0/0:228:227,1:227:8152:1:36:0,-65.0366,-730.093	0/1:71:23,48:23:809:48:1681:-130.199,0,-51.7552	0/1:129:55,74:55:1968:74:2621:-197.304,0,-138.562	0/1:152:112,40:112:4000:40:1413:-81.7087,0,-314.434	0/0:223:223,0:223:7970:0:0:0,-67.1297,-717.323	0/0:299:299,0:299:10687:0:0:0,-90.008,-961.74	0/0:172:172,0:172:6146:0:0:0,-51.7772,-553.239	0/1:74:38,36:38:1364:36:1284:-93.5872,0,-100.784	0/1:61:32,29:32:1152:29:1040:-75.5515,0,-85.6273	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:125:125,0:125:4471:0:0:0,-37.6287,-402.559	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/1:71:31,40:31:1112:40:1409:-105.732,0,-79.0182	0/0:76:76,0:76:2710:0:0:0,-22.8783,-244.143	0/1:57:33,24:33:1188:24:862:-60.7436,0,-90.0699	0/1:186:108,78:108:3860:78:2770:-193.547,0,-291.602	0/1:167:114,53:114:4080:53:1885:-119.655,0,-317.114	0/1:119:35,84:35:1252:84:2970:-231.709,0,-77.1625	0/0:61:59,2:59:2108:2:72:0,-11.5261,-183.153	0/0:162:161,1:161:5767:1:36:0,-45.1686,-515.546	0/1:71:43,28:43:1524:28:981:-67.2279,0,-116.08	0/0:345:345,0:345:12364:0:0:0,-103.855,-1112.59	0/1:182:127,54:127:4552:54:1874:-114.234,0,-355.148	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.904	0/0:219:218,1:218:7797:1:36:0,-62.3273,-698.161	0/1:211:148,63:148:5265:63:2248:-139.066,0,-410.471	0/1:174:124,50:124:4422:50:1773:-107.472,0,-345.773	0/1:14:9,5:9:324:5:165:-10.9592,0,-25.2914	0/1:15:4,11:4:144:11:392:-31.1046,0,-8.79817	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:179:140,39:140:4991:39:1389:-71.4226,0,-395.453	0/1:263:170,93:170:6095:93:3309:-218.857,0,-469.479	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:257:254,3:254:9074:3:108:0,-67.2895,-806.56	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/1:183:120,63:120:4292:63:2221:-145.062,0,-331.369	0/1:40:31,9:31:1108:9:324:-17.4647,0,-87.9898	0/1:46:31,15:31:1112:15:540:-35.0892,0,-86.544	0/0:333:333,0:333:11900:0:0:0,-100.243,-1070.86	0/0:99:98,1:98:3516:1:36:0,-26.2037,-313.051	0/1:189:137,52:137:4896:52:1848:-109.705,0,-383.898	0/1:117:75,42:75:2679:42:1493:-99.4391,0,-206.134	0/0:175:175,0:175:6259:0:0:0,-52.6802,-563.405	0/1:268:178,90:178:6384:90:3163:-204.218,0,-493.972	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/1:116:60,56:60:2156:56:1981:-143.633,0,-159.387	0/1:75:55,20:55:1968:20:707:-41.3773,0,-154.818	0/1:23:10,13:10:352:13:449:-33.8138,0,-25.0945	0/0:124:124,0:124:4418:0:0:0,-37.3277,-397.793	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3671	0/1:130:88,42:88:3152:42:1467:-93.1854,0,-244.771	0/0:150:150,0:150:5348:0:0:0,-45.1545,-481.453	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:258:257,1:257:9156:1:36:0,-74.0675,-820.418	0/1:240:169,71:169:6056:71:2537:-156.332,0,-472.895	0/0:88:85,2:85:3044:2:57:0,-21.1112,-268.751	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:233:231,2:231:8271:2:72:0,-63.3033,-737.562	0/0:151:151,0:151:5384:0:0:0,-45.4555,-484.691	0/0:24:24,0:24:846:0:0:0,-7.22472,-76.4578	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/1:84:58,26:58:2076:26:928:-58.5517,0,-161.824	0/1:38:20,18:20:720:18:648:-47.2127,0,-53.6896	0/1:171:132,39:132:4729:39:1396:-74.463,0,-374.29	0/0:104:104,0:104:3740:0:0:0,-31.3071,-336.799	0/0:527:526,1:526:18794:1:36:0,-155.045,-1687.43	0/1:154:86,68:86:3092:68:2432:-172.777,0,-232.148	0/1:118:54,64:54:1932:64:2256:-167.781,0,-138.635	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:30:13,17:13:445:17:597:-45.0252,0,-31.3445	0/1:68:44,23:44:1576:23:816:-53.2331,0,-121.603	0/1:93:43,50:43:1544:50:1792:-133.567,0,-111.257	0/0:178:178,0:178:6372:0:0:0,-53.5833,-573.57	0/0:127:127,0:127:4546:0:0:0,-38.2308,-409.305	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.482	0/1:68:45,23:45:1603:23:824:-54.0133,0,-124.089	0/1:149:104,45:104:3719:45:1608:-100.157,0,-290.058	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:74:74,0:74:2638:0:0:0,-22.2762,-237.666	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:97:97,0:97:3475:0:0:0,-29.1999,-312.961	0/1:129:72,56:72:2588:56:1996:-141.021,0,-194.277	0/1:45:22,23:22:779:23:820:-60.5762,0,-56.8857	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/0:98:98,0:98:3507:0:0:0,-29.5009,-315.84
chr04	32265323	.	C	T	12025.1	PASS	AB=0.401747;ABP=175.827;AC=40;AF=0.212766;AN=188;AO=831;CIGAR=1X;DP=4706;DPB=4706;DPRA=1.01151;EPP=1807.5;EPPR=8417.47;GTI=1;LEN=1;MEANALT=1;MQM=59.9916;MQMR=59.9729;NS=94;NUMALT=1;ODDS=1.21837;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29281;QR=138382;RO=3875;RPL=831;RPP=1807.5;RPPR=8417.47;RPR=0;RUN=1;SAF=0;SAP=1807.5;SAR=831;SRF=0;SRP=8417.47;SRR=3875;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.846	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:25:22,3:22:773:3:108:-2.54942,0,-62.3637	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	0/1:41:21,20:21:752:20:689:-49.9863,0,-55.664	0/0:87:87,0:87:3079:0:0:0,-26.1896,-277.307	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:37:23,14:23:828:14:500:-34.1981,0,-63.706	0/1:41:16,25:16:576:25:862:-65.5485,0,-39.8328	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.814	0/0:42:42,0:42:1482:0:0:0,-12.6433,-133.67	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:18:14,4:14:504:4:140:-7.52604,0,-40.2796	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:66:43,23:43:1514:23:820:-54.2545,0,-116.681	0/1:96:56,40:56:2012:40:1425:-99.6466,0,-152.454	0/1:52:13,39:13:468:39:1370:-107.941,0,-26.8061	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:20:12,8:12:428:8:284:-19.8828,0,-32.8382	0/0:126:126,0:126:4483:0:0:0,-37.9298,-403.58	0/1:144:89,55:89:3157:55:1922:-129.905,0,-241.007	0/0:20:20,0:20:682:0:0:0,-6.0206,-61.6947	0/0:103:103,0:103:3689:0:0:0,-31.0061,-332.211	0/1:84:56,28:56:1997:28:1004:-65.3893,0,-154.715	0/1:36:26,10:26:924:10:352:-21.1811,0,-72.6406	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:14:13,1:13:464:1:36:0,-0.616145,-38.4992	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:155:52,103:52:1849:103:3599:-277.459,0,-120.028	0/1:60:37,23:37:1305:23:801:-54.3449,0,-99.6876	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.164	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:73:43,30:43:1548:30:1046:-72.4707,0,-117.638	0/1:32:19,13:19:684:13:464:-32.4645,0,-52.2574	0/1:25:15,10:15:532:10:341:-23.492,0,-40.6873	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:76:44,32:44:1576:32:1140:-80.0309,0,-119.253	0/1:54:41,13:41:1472:13:468:-26.204,0,-116.521	0/0:78:78,0:78:2793:0:0:0,-23.4803,-251.608	0/1:90:73,17:73:2624:17:593:-26.602,0,-209.314	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:64:49,15:49:1760:15:536:-29.3089,0,-139.418	0/1:43:29,14:29:1029:14:459:-28.6762,0,-79.9769	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.66	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:34:26,8:26:932:8:284:-15.6683,0,-73.9638	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:101:101,0:101:3613:0:0:0,-30.404,-325.374	0/1:119:68,51:68:2444:51:1809:-127.267,0,-184.387	0/0:41:39,2:39:1381:2:72:0,-5.50551,-117.75	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:118:118,0:118:4203:0:0:0,-35.5215,-378.437	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:31:21,10:21:756:10:360:-23.4124,0,-59.0353	0/1:19:6,13:6:212:13:468:-36.7401,0,-13.7052	0/1:74:51,23:51:1794:23:820:-51.8463,0,-139.462	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:104:104,0:104:3701:0:0:0,-31.3071,-333.29	0/1:74:50,24:50:1796:24:856:-55.0849,0,-139.646	0/1:40:28,12:28:985:12:417:-25.819,0,-76.9203	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:45:30,15:30:1076:15:521:-33.67,0,-83.6065	0/1:48:20,28:20:720:28:985:-74.5121,0,-50.6793	0/0:104:104,0:104:3709:0:0:0,-31.3071,-333.925	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/1:82:45,37:45:1620:37:1320:-94.4175,0,-121.406	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:67:38,29:38:1349:29:1010:-71.038,0,-101.539	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/0:79:79,0:79:2802:0:0:0,-23.7814,-252.418	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282
chr04	32301165	.	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chr04	32301185	.	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chr04	32343611	.	A	C	220643	PASS	AB=0.507799;ABP=6.1265;AC=144;AF=0.765957;AN=188;AO=10357;CIGAR=1X;DP=13295;DPB=13295;DPRA=0;EPP=22493;EPPR=6374.11;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.9883;MQMR=59.9993;NS=94;NUMALT=1;ODDS=4.89611;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=370245;QR=105199;RO=2934;RPL=0;RPP=22493;RPPR=6374.11;RPR=10357;RUN=1;SAF=10357;SAP=22493;SAR=0;SRF=2934;SRP=6374.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:145:2,143:2:72:143:5097:-452.037,-36.8126,0	1/1:289:1,288:1:36:288:10308:-924.046,-83.3994,0	1/1:273:0,273:0:0:273:9760:-878.341,-82.1812,0	1/1:371:0,371:0:0:371:13233:-1190.77,-111.682,0	0/1:89:34,55:34:1216:55:1976:-151.323,0,-82.9549	0/1:39:18,21:18:648:21:756:-56.6271,0,-46.9117	0/1:146:76,70:76:2709:70:2497:-181.032,0,-200.102	1/1:269:0,269:0:0:269:9604:-864.305,-80.9771,0	1/1:202:0,200:0:0:200:7121:-640.593,-60.206,0	1/1:94:0,94:0:0:94:3368:-303.335,-28.2968,0	0/1:58:23,35:23:828:35:1252:-95.5253,0,-57.3844	0/1:124:65,59:65:2332:59:2096:-151.582,0,-172.812	1/1:80:0,80:0:0:80:2863:-257.907,-24.0824,0	1/1:86:0,86:0:0:86:3071:-276.618,-25.8886,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:84:0,84:0:0:84:3003:-270.501,-25.2865,0	0/1:41:18,23:18:648:23:828:-62.5019,0,-46.3097	1/1:23:0,23:0:0:23:810:-73.219,-6.92369,0	0/1:58:26,32:26:936:32:1152:-86.5304,0,-67.0997	0/1:293:137,156:137:4916:156:5592:-415.2,0,-354.388	0/1:285:147,138:147:5269:138:4920:-357.16,0,-388.55	0/1:156:97,58:97:3484:58:2072:-139.771,0,-266.79	1/1:297:3,294:3:108:294:10535:-937.987,-79.3307,0	1/1:113:9,104:9:320:104:3721:-305.943,-4.87403,0	0/1:161:71,90:71:2552:90:3216:-241.197,0,-181.464	1/1:381:1,380:1:36:380:13540:-1214.8,-111.094,0	0/1:435:200,235:200:7176:235:8416:-626.487,0,-514.946	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:361:0,361:0:0:361:12907:-1161.44,-108.672,0	0/1:305:129,176:129:4628:176:6312:-476.357,0,-324.868	0/1:199:105,94:105:3780:94:3352:-241.992,0,-280.492	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:16:2,14:2:72:14:504:-40.8816,0,-2.02024	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:17:13,4:13:464:4:144:-8.19611,0,-36.98	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:190:89,101:89:3196:101:3611:-267.999,0,-230.667	0/1:209:116,93:116:4157:93:3332:-237.182,0,-311.395	1/1:59:0,59:0:0:59:2101:-189.349,-17.7608,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:119:4,115:4:144:115:4128:-358.389,-22.509,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:269:140,129:140:5002:129:4605:-333.637,0,-369.348	0/1:63:26,37:26:936:37:1324:-100.497,0,-65.5946	0/1:48:22,26:22:788:26:928:-69.3888,0,-56.7954	1/1:213:0,213:0:0:213:7620:-685.838,-64.1194,0	1/1:130:0,130:0:0:130:4649:-418.571,-39.1339,0	0/1:225:98,127:98:3520:127:4536:-340.676,0,-249.277	0/1:155:81,74:81:2908:74:2644:-191.547,0,-215.295	1/1:160:0,160:0:0:160:5748:-517.433,-48.1648,0	0/1:198:109,89:109:3908:89:3180:-226.821,0,-292.308	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:128:56,72:56:2012:72:2584:-194.277,0,-142.821	0/1:114:56,58:56:1997:58:2084:-153.513,0,-145.685	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	1/1:139:0,139:0:0:139:4969:-447.36,-41.8432,0	1/1:105:0,105:0:0:105:3760:-338.599,-31.6082,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:120:73,47:73:2616:47:1661:-113.653,0,-199.564	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:321:0,321:0:0:321:11446:-1030.02,-96.6306,0	0/1:333:165,168:165:5909:168:6015:-441.212,0,-431.674	1/1:88:1,87:1:36:87:3092:-274.909,-22.8924,0	1/1:119:0,119:0:0:119:4249:-382.588,-35.8226,0	1/1:256:0,256:0:0:256:9151:-823.563,-77.0637,0	1/1:425:5,420:5:180:420:15036:-1336.41,-111.386,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:105:0,105:0:0:105:3741:-336.872,-31.6082,0	0/1:35:14,21:14:504:21:756:-57.8312,0,-35.162	0/1:45:25,20:25:900:20:716:-51.2214,0,-67.7747	0/1:185:86,99:86:3088:99:3540:-263.119,0,-222.457	1/1:189:0,189:0:0:189:6761:-608.559,-56.8947,0	1/1:380:0,380:0:0:380:13563:-1220.46,-114.391,0	0/1:197:118,79:118:4221:79:2829:-195.546,0,-320.766	0/1:216:102,114:102:3668:114:4092:-303.442,0,-265.3	1/1:148:1,147:1:36:147:5248:-468.861,-40.9542,0	0/1:16:4,12:4:144:12:419:-33.2262,0,-8.49714	0/1:125:48,77:48:1713:77:2756:-210.643,0,-116.825	0/1:184:77,107:77:2753:107:3828:-289.319,0,-192.621	1/1:331:6,325:6:216:325:11623:-1026.15,-79.8504,0	1/1:64:0,64:0:0:64:2283:-205.731,-19.2659,0	1/1:64:0,64:0:0:64:2266:-204.202,-19.2659,0	0/1:48:31,17:31:1112:17:604:-40.2412,0,-85.9419	0/1:134:73,61:73:2620:61:2184:-156.488,0,-195.709	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	1/1:77:0,77:0:0:77:2755:-248.191,-23.1793,0	1/1:60:0,60:0:0:60:2151:-193.856,-18.0618,0	0/1:125:64,61:64:2273:61:2183:-159.107,0,-167.202	0/1:75:48,26:48:1728:26:924:-60.8418,0,-133.169	1/1:164:0,164:0:0:164:5860:-527.512,-49.3689,0	1/1:114:0,114:0:0:114:4064:-365.947,-34.3174,0
chr04	32345477	.	G	A	66910.3	PASS	AB=0.509972;ABP=7.9474;AC=44;AF=0.234043;AN=188;AO=2934;CIGAR=1X;DP=12154;DPB=12154;DPRA=1.02686;EPP=6365.43;EPPR=19993.6;GTI=0;LEN=1;MEANALT=1.01923;MQM=59.987;MQMR=59.9983;NS=94;NUMALT=1;ODDS=2.50392;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104577;QR=325886;RO=9218;RPL=1383;RPP=23.8991;RPPR=28.9756;RPR=1551;RUN=1;SAF=1384;SAP=23.4047;SAR=1550;SRF=4446;SRP=28.0456;SRR=4772;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:133:133,0:133:4692:0:0:0,-40.037,-422.443	0/0:165:165,0:165:5864:0:0:0,-49.6699,-527.874	0/0:200:200,0:200:7102:0:0:0,-60.206,-639.243	0/1:100:45,55:45:1604:55:1972:-147.652,0,-114.547	0/1:44:17,27:17:604:27:971:-74.4625,0,-41.4453	0/1:161:93,68:93:3292:68:2431:-170.579,0,-248.034	0/0:144:144,0:144:5123:0:0:0,-43.3483,-461.213	0/0:130:130,0:130:4618:0:0:0,-39.1339,-415.786	0/0:123:121,2:121:4290:2:72:0,-30.19,-379.441	0/1:103:57,46:57:2027:46:1652:-117.962,0,-151.696	0/1:206:101,105:101:3542:105:3749:-275.598,0,-256.979	0/0:174:174,0:174:6090:0:0:0,-52.3792,-548.208	0/0:139:139,0:139:4861:0:0:0,-41.8432,-437.646	0/0:188:188,0:188:6655:0:0:0,-56.5936,-599.032	0/0:141:141,0:141:4970:0:0:0,-42.4452,-447.451	0/1:124:63,61:63:2231:61:2166:-157.878,0,-163.726	0/0:133:133,0:133:4678:0:0:0,-40.037,-421.186	0/1:77:48,29:48:1667:29:1040:-70.7351,0,-127.132	0/1:222:109,113:109:3891:113:4027:-295.788,0,-283.556	0/1:163:85,78:85:2997:78:2775:-200.924,0,-220.893	0/1:135:39,96:39:1382:96:3431:-268.364,0,-84.0382	0/0:118:117,1:117:4125:1:36:0,-31.9233,-367.838	0/0:99:93,6:93:3261:6:216:0,-10.0115,-273.924	0/1:128:63,65:63:2225:65:2302:-168.872,0,-161.981	0/0:285:285,0:285:10114:0:0:0,-85.7935,-910.197	0/1:272:129,143:129:4557:143:5110:-378.162,0,-328.418	0/0:89:89,0:89:3147:0:0:0,-26.7917,-283.458	0/0:305:305,0:305:10769:0:0:0,-91.8141,-969.125	0/1:101:51,50:51:1811:50:1780:-130.079,0,-132.867	0/1:148:71,77:71:2486:77:2756:-203.73,0,-179.439	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:25:10,15:10:360:15:540:-41.4108,0,-25.2186	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:8:7,1:7:244:1:36:-1.19004,0,-19.8912	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:448:218,230:218:7674:230:8151:-598.751,0,-555.789	0/1:107:54,53:54:1931:53:1868:-136.183,0,-141.856	0/0:106:106,0:106:3731:0:0:0,-31.9092,-335.994	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:161:158,3:158:5618:3:108:0,-38.3907,-495.67	0/0:81:81,0:81:2880:0:0:0,-24.3834,-259.438	0/1:148:72,76:72:2561:76:2716:-200.131,0,-186.186	0/1:195:94,101:94:3311:101:3602:-265.684,0,-239.509	0/1:123:68,55:68:2383:55:1957:-139.377,0,-177.7	0/0:151:151,0:151:5373:0:0:0,-45.4555,-483.704	0/0:143:142,0:142:5023:0:0:0,-42.7463,-452.009	0/1:123:55,68:55:1920:68:2399:-179.138,0,-136.045	0/1:139:64,75:64:2279:75:2680:-199.602,0,-163.528	0/0:127:127,0:127:4518:0:0:0,-38.2308,-406.79	0/1:187:101,86:101:3584:86:3080:-221.136,0,-266.475	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:149:70,79:70:2492:79:2832:-210.265,0,-179.68	0/1:56:30,26:30:1050:26:928:-66.9806,0,-77.9511	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:139:138,1:138:4882:1:36:0,-38.2449,-435.94	0/0:91:91,0:91:3221:0:0:0,-27.3937,-290.111	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:146:81,65:81:2883:65:2328:-165.829,0,-215.757	0/0:199:195,4:195:6804:4:144:0,-46.5913,-599.131	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:172:172,0:172:6107:0:0:0,-51.7772,-549.731	0/1:197:88,108:88:3098:108:3855:-287.784,0,-219.683	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.286	0/0:85:85,0:85:3019:0:0:0,-25.5875,-271.942	0/0:166:166,0:166:5882:0:0:0,-49.971,-529.494	0/0:138:137,1:137:4835:1:36:0,-37.9439,-431.708	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.155	0/1:141:77,64:77:2726:64:2271:-162.207,0,-203.138	0/1:20:6,14:6:212:14:504:-39.6775,0,-13.4042	0/1:135:65,70:65:2324:70:2512:-185.693,0,-168.781	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/0:175:175,0:175:6160:0:0:0,-52.6802,-554.507	0/1:185:98,87:98:3490:87:3114:-224.795,0,-258.621	0/1:111:54,57:54:1904:57:2020:-148.656,0,-138.221	0/0:110:109,1:109:3838:1:36:0,-29.515,-342.02	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:113:59,54:59:2074:54:1927:-139.69,0,-152.911	0/1:112:55,57:55:1936:57:2010:-147.454,0,-140.798	0/0:218:218,0:218:7752:0:0:0,-65.6245,-697.714	0/0:163:163,0:163:5715:0:0:0,-49.0679,-514.477	0/0:144:144,0:144:5094:0:0:0,-43.3483,-458.607	0/1:190:87,103:87:3032:103:3650:-271.511,0,-215.915	0/1:312:154,158:154:5419:158:5626:-412.539,0,-393.924	0/0:75:75,0:75:2615:0:0:0,-22.5772,-235.596	0/0:160:160,0:160:5643:0:0:0,-48.1648,-507.995	0/0:165:165,0:165:5838:0:0:0,-49.6699,-525.54	0/0:93:93,0:93:3278:0:0:0,-27.9958,-295.24	0/1:168:85,83:85:3006:83:2980:-217.858,0,-220.2	0/1:157:57,100:57:1996:100:3537:-271.277,0,-132.65	0/0:151:151,0:151:5337:0:0:0,-45.4555,-480.467	0/0:228:228,0:228:8063:0:0:0,-68.6348,-725.694
chr04	32383833	.	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chr04	32383851	.	T	C	26394.1	PASS	AB=0.321107;ABP=1700.59;AC=46;AF=0.244681;AN=188;AO=1979;CIGAR=1X;DP=10457;DPB=10457;DPRA=1.47972;EPP=4274.34;EPPR=18356.3;GTI=2;LEN=1;MEANALT=1.03774;MQM=59.4694;MQMR=59.9895;NS=94;NUMALT=1;ODDS=1.435;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70701;QR=301417;RO=8476;RPL=3;RPP=4274.34;RPPR=18356.3;RPR=1976;RUN=1;SAF=0;SAP=4300.35;SAR=1979;SRF=0;SRP=18408.4;SRR=8476;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:45,38:45:1588:38:1363:-97.9566,0,-118.225	0/0:76:75,1:75:2676:1:36:0,-19.28,-237.488	0/0:243:243,0:243:8656:0:0:0,-73.1503,-779.038	0/0:171:171,0:171:6096:0:0:0,-51.4761,-548.745	0/0:64:64,0:64:2271:0:0:0,-19.2659,-204.652	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/1:113:86,27:86:3072:27:968:-53.4208,0,-242.693	0/0:149:148,1:148:5203:1:36:0,-41.2552,-464.817	0/1:121:80,40:80:2840:40:1436:-92.987,0,-219.379	0/0:74:74,0:74:2592:0:0:0,-22.2762,-233.529	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:111:111,0:111:3948:0:0:0,-33.4143,-355.514	0/1:119:68,51:68:2432:51:1813:-127.591,0,-183.313	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/1:113:75,38:75:2656:38:1345:-87.2905,0,-205.271	0/1:111:76,35:76:2724:35:1238:-78.2848,0,-211.989	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/1:60:41,19:41:1444:19:669:-42.4721,0,-112.194	0/1:44:34,10:34:1197:10:360:-19.499,0,-94.7881	0/1:188:137,51:137:4869:51:1832:-108.567,0,-381.772	0/1:274:210,64:210:7406:64:2276:-122.55,0,-584.093	0/1:207:120,87:120:4247:87:3120:-218.67,0,-320.1	0/1:146:94,52:94:3351:52:1872:-124.708,0,-257.857	0/0:51:48,3:48:1716:3:108:0,-5.30054,-144.674	0/1:115:70,45:70:2495:45:1616:-111.067,0,-190.184	0/1:323:255,68:255:9080:68:2429:-121.59,0,-719.95	0/1:323:211,112:211:7524:112:3982:-261.199,0,-579.97	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/1:312:205,107:205:7329:107:3828:-250.606,0,-565.738	0/1:156:96,60:96:3413:60:2148:-146.604,0,-260.419	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/1:34:28,6:28:996:6:216:-9.55549,0,-79.7199	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:33:17,16:17:604:16:568:-41.4819,0,-44.7566	0/0:178:178,0:178:6339:0:0:0,-53.5833,-570.605	0/0:159:159,0:159:5656:0:0:0,-47.8638,-509.16	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:161:99,62:99:3515:62:2220:-151.566,0,-268.096	0/0:40:40,0:40:1419:0:0:0,-12.0412,-128.007	0/1:192:155,37:155:5516:37:1324:-61.6088,0,-438.772	0/1:72:51,21:51:1811:21:743:-45.5192,0,-141.596	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:126:77,49:77:2713:49:1756:-120.337,0,-206.485	0/1:134:73,61:73:2592:61:2172:-155.296,0,-193.192	0/1:313:207,105:207:7360:105:3753:-243.68,0,-568.144	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/0:84:84,0:84:2968:0:0:0,-25.2865,-267.353	0/0:175:175,0:175:6197:0:0:0,-52.6802,-557.834	0/1:19:9,10:9:324:10:360:-27.0243,0,-23.7863	0/1:247:174,73:174:6191:73:2624:-161.867,0,-482.937	0/1:44:32,12:32:1132:12:428:-25.6135,0,-88.9433	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:136:136,0:136:4848:0:0:0,-40.9401,-436.476	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.94	0/1:139:95,44:95:3382:44:1580:-100.635,0,-262.753	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:255:255,0:255:9093:0:0:0,-76.7626,-818.349	0/1:164:136,28:136:4876:28:1004:-41.2794,0,-389.623	0/1:70:58,12:58:2076:12:432:-18.1491,0,-166.038	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/1:254:180,74:180:6436:74:2648:-162.036,0,-502.867	0/1:264:159,105:159:5652:105:3772:-260.172,0,-429.333	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:42:32,10:32:1131:10:360:-20.101,0,-89.4545	0/0:145:143,2:143:5108:2:72:0,-36.8126,-453.028	0/1:172:115,57:115:4104:57:2040:-132.084,0,-317.769	0/0:94:94,0:94:3333:0:0:0,-28.2968,-300.188	0/0:224:224,0:224:7937:0:0:0,-67.4307,-714.364	0/1:121:82,39:82:2912:39:1396:-89.5145,0,-225.879	0/1:259:191,68:191:6804:68:2391:-137.429,0,-534.47	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.4848	0/0:117:116,1:116:4108:1:36:0,-31.6222,-366.311	0/0:131:131,0:131:4660:0:0:0,-39.4349,-419.565	0/0:184:184,0:184:6511:0:0:0,-55.3895,-586.081	0/0:50:49,1:49:1708:1:36:0,-11.4532,-150.404	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:92:52,40:52:1864:40:1419:-100.248,0,-140.345	0/0:125:125,0:125:4443:0:0:0,-37.6287,-400.044	0/1:28:19,9:19:680:9:315:-20.2584,0,-53.1003	0/0:67:67,0:67:2362:0:0:0,-20.169,-212.839	0/0:58:58,0:58:2056:0:0:0,-17.4597,-185.312	0/0:43:42,1:42:1482:1:36:0,-9.34601,-130.075	0/1:156:106,50:106:3742:50:1791:-114.483,0,-290.023	0/1:117:70,47:70:2500:47:1669:-115.216,0,-190.032	0/0:131:131,0:131:4656:0:0:0,-39.4349,-419.206	0/0:122:121,1:121:4319:1:36:0,-33.1274,-385.289
chr04	32383857	.	C	T	42687.3	PASS	AB=0.412793;ABP=324.177;AC=43;AF=0.228723;AN=188;AO=2016;CIGAR=1X;DP=10420;DPB=10420;DPRA=1.34394;EPP=3.35929;EPPR=3.01961;GTI=2;LEN=1;MEANALT=1.05882;MQM=59.9712;MQMR=59.871;NS=94;NUMALT=1;ODDS=3.23644;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71506;QR=300423;RO=8398;RPL=999;RPP=3.35929;RPPR=3.01961;RPR=1017;RUN=1;SAF=0;SAP=4380.7;SAR=2016;SRF=0;SRP=18239;SRR=8398;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:84:84,0:84:2959:0:0:0,-25.2865,-266.508	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:239:239,0:239:8555:0:0:0,-71.9462,-769.947	0/0:172:172,0:172:6128:0:0:0,-51.7772,-551.621	0/1:62:34,28:34:1216:28:985:-70.2279,0,-91.0827	0/1:31:15,16:15:527:16:568:-42.1199,0,-38.4283	0/1:113:66,47:66:2355:47:1661:-115.759,0,-178.192	0/0:155:155,0:155:5515:0:0:0,-46.6596,-496.476	0/0:123:122,1:122:4362:1:36:0,-33.4681,-389.116	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.359	0/1:52:28,24:28:1008:24:856:-61.7075,0,-75.3828	0/1:110:58,52:58:2088:52:1842:-132.946,0,-155.076	0/0:122:122,0:122:4363:0:0:0,-36.7257,-392.808	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.384	0/0:112:112,0:112:4005:0:0:0,-33.7154,-360.597	0/0:107:107,0:107:3852:0:0:0,-32.2102,-346.851	0/1:28:10,18:10:360:18:640:-49.5005,0,-24.3155	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/1:43:26,16:26:936:16:576:-39.1719,0,-71.5564	0/1:184:106,78:106:3804:78:2737:-191.183,0,-287.167	0/1:275:171,104:171:6132:104:3680:-248.616,0,-469.095	0/1:207:135,72:135:4835:72:2567:-168.966,0,-372.733	0/0:149:149,0:149:5309:0:0:0,-44.8535,-477.853	0/0:49:48,0:48:1716:0:0:0,-14.4494,-154.368	0/1:114:79,35:79:2832:35:1248:-78.3075,0,-220.756	0/0:330:330,0:330:11810:0:0:0,-99.3399,-1062.72	0/1:315:212,103:212:7608:103:3633:-232.349,0,-589.523	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:319:316,2:316:11310:2:68:0,-89.6152,-1011.23	0/1:151:112,39:112:3966:39:1385:-79.492,0,-311.651	0/1:75:47,28:47:1684:28:996:-67.3776,0,-129.27	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:33:13,20:13:468:20:712:-54.4727,0,-32.5257	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.732	0/1:175:82,93:82:2893:93:3286:-243.277,0,-207.924	0/1:151:77,74:77:2763:74:2624:-190.946,0,-203.455	0/0:59:59,0:59:2094:0:0:0,-17.7608,-188.729	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:164:163,1:163:5831:1:36:0,-45.7706,-521.275	0/0:41:41,0:41:1439:0:0:0,-12.3422,-129.802	0/1:190:104,86:104:3732:86:3052:-217.716,0,-278.829	0/1:72:46,26:46:1656:26:924:-61.8035,0,-127.654	0/1:48:21,27:21:752:27:945:-70.9128,0,-53.5568	0/0:123:122,0:122:4352:0:0:0,-36.7257,-391.437	0/0:133:133,0:133:4751:0:0:0,-40.037,-427.64	0/1:313:212,101:212:7584:101:3541:-224.676,0,-588.247	0/1:81:34,47:34:1224:47:1657:-125.032,0,-86.0836	0/0:83:82,1:82:2936:1:36:0,-21.3872,-260.876	0/1:177:91,85:91:3256:85:3023:-218.96,0,-239.92	0/1:19:16,3:16:576:3:108:-4.3556,0,-46.455	0/1:247:169,78:169:6059:78:2792:-177.166,0,-471.057	0/1:43:27,16:27:968:16:572:-38.8691,0,-74.4931	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:137:137,0:137:4912:0:0:0,-41.2411,-442.23	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:42:17,25:17:608:25:880:-66.8744,0,-42.4088	0/0:137:137,0:137:4920:0:0:0,-41.2411,-442.935	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:257:257,0:257:9195:0:0:0,-77.3647,-827.518	0/1:162:82,80:82:2944:80:2856:-208.511,0,-216.399	0/0:73:72,1:72:2584:1:36:0,-18.3769,-229.211	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:257:256,1:256:9154:1:36:0,-73.7664,-820.161	0/0:265:264,1:264:9450:1:36:0,-76.1747,-846.826	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/1:49:31,18:31:1116:18:640:-43.1788,0,-86.0012	0/1:41:25,16:25:900:16:553:-37.7518,0,-68.9788	0/1:143:73,70:73:2624:70:2508:-182.925,0,-193.36	0/0:171:171,0:171:6132:0:0:0,-51.4761,-551.778	0/0:95:95,0:95:3420:0:0:0,-28.5978,-308.012	0/1:225:102,123:102:3651:123:4396:-328.082,0,-261.062	0/1:118:83,35:83:2984:35:1250:-77.2797,0,-233.27	0/0:257:256,1:256:9171:1:36:0,-73.7664,-821.686	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	0/1:119:54,65:54:1936:65:2311:-172.426,0,-138.694	0/1:122:60,62:60:2139:62:2177:-159.469,0,-156.052	0/0:180:179,0:179:6372:0:0:0,-53.8844,-573.215	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.689	0/1:94:68,26:68:2422:26:928:-55.5414,0,-189.829	0/1:124:56,68:56:2004:68:2425:-181.177,0,-143.306	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:158:112,46:112:3991:46:1647:-100.955,0,-311.787	0/1:114:77,37:77:2752:37:1285:-81.6313,0,-213.541	0/0:135:135,0:135:4844:0:0:0,-40.639,-436.113	0/0:119:119,0:119:4263:0:0:0,-35.8226,-383.847
chr04	32386147	.	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chr04	32386303	.	T	C	24482	PASS	AB=0.493806;ABP=4.00553;AC=44;AF=0.234043;AN=188;AO=1485;CIGAR=1X;DP=6440;DPB=6440;DPRA=1.03848;EPP=3132.81;EPPR=9957.33;GTI=0;LEN=1;MEANALT=1.02;MQM=59.9872;MQMR=59.9182;NS=94;NUMALT=1;ODDS=5.16882;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52351;QR=177605;RO=4953;RPL=11;RPP=3132.81;RPPR=9957.33;RPR=1474;RUN=1;SAF=1485;SAP=3227.65;SAR=0;SRF=4953;SRP=10758.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:149:149,0:149:5336:0:0:0,-44.8535,-480.368	0/0:145:144,1:144:5168:1:36:0,-40.0511,-461.661	0/1:72:28,44:28:1008:44:1543:-117.468,0,-69.3622	0/1:44:22,22:22:771:22:765:-55.9224,0,-56.465	0/1:89:37,52:37:1323:52:1864:-141.248,0,-92.5796	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.622	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:68:31,36:31:1104:36:1276:-94.6144,0,-79.1419	0/1:60:27,33:27:955:33:1123:-83.3076,0,-68.2031	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.856	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:58:24,34:24:856:34:1160:-87.2418,0,-59.9014	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:36:20,16:20:720:16:555:-39.439,0,-54.2917	0/1:124:70,54:70:2508:54:1882:-132.33,0,-188.645	0/1:108:51,57:51:1828:57:2015:-149.112,0,-132.285	0/1:93:28,65:28:1008:65:2272:-176.746,0,-63.0406	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:51:48,3:48:1728:3:108:0,-5.27736,-145.73	0/1:79:46,33:46:1652:33:1172:-82.006,0,-125.187	0/0:183:183,0:183:6564:0:0:0,-55.0885,-590.47	0/1:196:95,101:95:3408:101:3577:-263.137,0,-247.442	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8088	0/0:215:215,0:215:7705:0:0:0,-64.7214,-693.379	0/1:53:27,26:27:972:26:932:-68.2443,0,-71.8433	0/1:74:38,36:38:1368:36:1280:-93.227,0,-101.145	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:14:4,10:4:144:10:354:-27.9851,0,-9.0992	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:114:56,58:56:2003:58:2056:-150.994,0,-146.2	0/1:97:47,50:47:1688:50:1766:-130.021,0,-123.007	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:109:108,1:108:3880:1:36:0,-29.214,-345.665	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:110:62,48:62:2228:48:1699:-120.082,0,-167.67	0/1:40:20,20:20:716:20:703:-51.5519,0,-52.7265	0/1:30:15,15:15:540:15:515:-37.6441,0,-39.9056	0/0:68:68,0:68:2433:0:0:0,-20.47,-219.215	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.262	0/1:120:72,48:72:2583:48:1699:-117.072,0,-196.595	0/1:66:35,31:35:1260:31:1099:-79.3515,0,-93.8375	0/0:108:108,0:108:3867:0:0:0,-32.5112,-348.224	0/1:65:32,33:32:1148:33:1180:-86.9411,0,-84.0629	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:137:63,74:63:2252:74:2656:-198.045,0,-161.702	0/1:44:23,21:23:828:21:737:-53.4053,0,-61.5988	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:100:99,0:99:3556:0:0:0,-29.802,-319.701	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4772	0/1:56:29,27:29:1040:27:951:-69.0466,0,-77.0567	0/0:86:85,1:85:3048:1:36:0,-22.2903,-270.951	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:113:113,0:113:4056:0:0:0,-34.0164,-364.848	0/1:99:43,56:43:1532:56:1963:-147.143,0,-108.371	0/0:45:44,1:44:1580:1:36:0,-9.94807,-138.893	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.906	0/0:98:98,0:98:3501:0:0:0,-29.5009,-315.299	0/0:138:138,0:138:4931:0:0:0,-41.5421,-443.94	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:48:28,20:28:1008:20:685:-47.5194,0,-76.5869	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	0/1:59:37,22:37:1320:22:771:-51.9495,0,-101.341	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:127:78,49:78:2804:49:1740:-118.654,0,-214.368	0/1:118:78,40:78:2804:40:1403:-91.0449,0,-215.715	0/0:63:60,3:60:2156:3:108:0,-8.88972,-184.232	0/1:11:5,6:5:176:6:212:-16.1135,0,-12.8737	0/1:89:43,46:43:1540:46:1629:-120.105,0,-112.101	0/1:93:49,44:49:1756:44:1576:-114.136,0,-130.328	0/0:106:106,0:106:3790:0:0:0,-31.9092,-341.289	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.437	0/1:36:18,18:18:644:18:624:-45.6458,0,-47.4535	0/1:73:37,36:37:1328:36:1260:-91.7268,0,-97.847	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.146	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:81:46,35:46:1656:35:1225:-86.1691,0,-124.945	0/1:48:16,32:16:576:32:1104:-85.2152,0,-37.7255	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24
chr04	32396963	.	GATC	AATC,AATT	143795	PASS	AB=0.515239,0.480044;ABP=8.56977,12.544;AC=148,40;AF=0.787234,0.212766;AN=188;AO=5349,1331;CIGAR=1X3M,1X2M1X;DP=6697;DPB=6697;DPRA=0,1.06393;EPP=11618.2,2893.24;EPPR=0;GTI=2;LEN=1,4;MEANALT=1.65957,2.32609;MQM=59.9484,59.9384;MQMR=0;NS=94;NUMALT=2;ODDS=0.0642034;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=190046,46641;QR=0;RO=0;RPL=0,0;RPP=11618.2,2893.24;RPPR=0;RPR=5349,1331;RUN=1,1;SAF=0,0;SAP=11618.2,2893.24;SAR=5349,1331;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34,0:0:0:34,0:1198,0:-108.125,-10.235,0,-108.125,-10.235,-108.125	1/1:129:0,129,0:0:0:129,0:4607,0:-414.789,-38.8329,0,-414.789,-38.8329,-414.789	1/1:143:0,143,0:0:0:143,0:5071,0:-456.537,-43.0473,0,-456.537,-43.0473,-456.537	1/1:185:0,185,0:0:0:185,0:6554,0:-589.944,-55.6906,0,-589.944,-55.6906,-589.944	1/2:54:0,25,29:0:0:25,29:882,1026:-155.74,-83.922,-76.3963,-72.1708,0,-63.4409	1/2:66:0,27,39:0:0:27,39:959,1362:-189.281,-111.136,-103.009,-78.4976,0,-66.7574	1/2:95:0,48,44:0:0:48,44:1700,1527:-262.641,-124.154,-109.705,-138.518,0,-125.272	1/1:90:0,90,0:0:0:90,0:3215,0:-289.572,-27.0927,0,-289.572,-27.0927,-289.572	1/1:107:0,107,0:0:0:107,0:3818,0:-343.816,-32.2102,0,-343.816,-32.2102,-343.816	1/1:83:0,83,0:0:0:83,0:2968,0:-267.344,-24.9855,0,-267.344,-24.9855,-267.344	1/2:16:0,6,10:0:0:6,10:216,360:-47.3585,-29.734,-27.9278,-17.9843,0,-14.974	1/2:46:0,23,23:0:0:23,23:820,816:-133.682,-66.8385,-59.9148,-67.1988,0,-60.2751	1/1:31:0,31,0:0:0:31,0:1112,0:-100.383,-9.33193,0,-100.383,-9.33193,-100.383	1/1:31:0,31,0:0:0:31,0:1095,0:-98.8475,-9.33193,0,-98.8475,-9.33193,-98.8475	1/1:32:0,32,0:0:0:32,0:1135,0:-102.458,-9.63296,0,-102.458,-9.63296,-102.458	1/1:24:0,24,0:0:0:24,0:852,0:-77.0004,-7.22472,0,-77.0004,-7.22472,-77.0004	1/2:36:0,19,17:0:0:19,17:665,602:-103.493,-49.3921,-43.6725,-54.4532,0,-49.3357	1/1:29:0,29,0:0:0:29,0:1023,0:-92.3817,-8.72987,0,-92.3817,-8.72987,-92.3817	1/2:5:0,3,2:0:0:3,2:108,71:-14.9552,-6.14,-5.23691,-9.17208,0,-8.57002	1/2:110:0,60,50:0:0:60,50:2116,1748:-314.848,-142.554,-124.492,-172.645,0,-157.594	1/2:88:0,44,43:0:0:44,43:1576,1506:-251.129,-122.596,-109.351,-128.595,0,-115.65	1/1:47:0,45,2:0:0:45,2:1612,71:-145.015,-13.5464,0,-139.23,-7.40677,-138.628	1/1:84:0,84,0:0:0:84,0:2987,0:-269.063,-25.2865,0,-269.063,-25.2865,-269.063	1/1:101:0,99,2:0:0:99,2:3543,71:-318.712,-29.802,0,-312.927,-23.662,-312.325	1/2:62:0,31,31:0:0:31,31:1116,1071:-178.413,-87.3638,-78.0318,-91.4021,0,-82.0702	1/1:303:0,303,0:0:0:303,0:10744,0:-966.876,-91.2121,0,-966.876,-91.2121,-966.876	1/2:196:0,114,82:0:0:114,82:4025,2896:-563.964,-236.194,-201.877,-328.122,0,-303.438	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:213:0,213,0:0:0:213,0:7543,0:-678.902,-64.1194,0,-678.902,-64.1194,-678.902	1/2:122:0,44,78:0:0:44,78:1572,2687:-346.768,-218.595,-205.35,-128.525,0,-105.044	1/2:106:0,61,45:0:0:61,45:2141,1587:-303.815,-129.575,-111.213,-174.591,0,-161.045	1/2:13:0,5,8:0:0:5,8:180,279:-37.7297,-23.0383,-21.5332,-15.0469,0,-12.6387	1/2:12:0,3,9:0:0:3,9:104,315:-34.3595,-25.9069,-25.0038,-8.79971,0,-6.09044	1/2:11:0,5,6:0:0:5,6:180,211:-32.2183,-17.5274,-16.0223,-15.0469,0,-13.2407	1/2:3:0,2,1:0:0:2,1:68,36:-8.79971,-3.29724,-2.69518,-5.85565,0,-5.55462	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/2:180:0,91,89:0:0:91,89:3255,3116:-519.302,-253.879,-226.485,-265.777,0,-238.985	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/1:7:0,7,0:0:0:7,0:244,0:-22.2994,-2.10721,0,-22.2994,-2.10721,-22.2994	1/1:85:0,84,1:0:0:84,1:2983,36:-268.343,-25.2865,0,-265.405,-21.9893,-265.104	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:119:0,69,50:0:0:69,50:2464,1723:-341.192,-140.299,-119.528,-201.243,0,-186.192	1/2:24:0,8,16:0:0:8,16:288,556:-69.0365,-45.5507,-43.1424,-23.8414,0,-19.0249	1/2:24:0,9,15:0:0:9,15:324,531:-70.046,-43.607,-40.8977,-26.7966,0,-22.2811	1/1:133:0,133,0:0:0:133,0:4674,0:-420.823,-40.037,0,-420.823,-40.037,-420.823	1/1:128:0,127,0:0:0:127,0:4536,0:-408.048,-38.2308,0,-408.048,-38.2308,-408.048	1/2:142:0,86,55:0:0:86,55:3008,1934:-402.051,-157.535,-131.647,-244.624,0,-228.067	1/2:117:0,66,51:0:0:66,51:2343,1787:-336.582,-145.76,-125.892,-191.174,0,-175.822	1/1:97:0,97,0:0:0:97,0:3430,0:-308.913,-29.1999,0,-308.913,-29.1999,-308.913	1/1:80:0,80,0:0:0:80,0:2859,0:-257.547,-24.0824,0,-257.547,-24.0824,-257.547	1/2:13:0,7,6:0:0:7,6:248,208:-37.4583,-17.2513,-15.1441,-20.557,0,-18.7508	1/2:120:0,75,44:0:0:75,44:2631,1536:-339.036,-124.926,-102.349,-214.1,0,-200.855	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/2:11:0,6,5:0:0:6,5:216,179:-32.567,-14.9552,-13.1491,-17.9704,0,-16.4652	1/1:101:0,101,0:0:0:101,0:3592,0:-323.489,-30.404,0,-323.489,-30.404,-323.489	1/1:49:0,49,0:0:0:49,0:1721,0:-155.173,-14.7505,0,-155.173,-14.7505,-155.173	1/1:5:0,5,0:0:0:5,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chr04	32397012	.	T	C	114632	PASS	AB=0.514778;ABP=9.17172;AC=143;AF=0.760638;AN=188;AO=5433;CIGAR=1X;DP=7021;DPB=7021;DPRA=0;EPP=11800.6;EPPR=3436.11;GTI=2;LEN=1;MEANALT=1.07447;MQM=59.9431;MQMR=59.9469;NS=94;NUMALT=1;ODDS=0.905172;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193410;QR=55640;RO=1581;RPL=5433;RPP=11800.6;RPPR=3436.11;RPR=0;RUN=1;SAF=0;SAP=11800.6;SAR=5433;SRF=0;SRP=3436.11;SRR=1581;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1205:-108.754,-10.235,0	1/1:131:0,131:0:0:131:4608:-414.872,-39.4349,0	1/1:147:0,147:0:0:147:5230:-470.822,-44.2514,0	1/1:185:0,185:0:0:185:6529:-587.67,-55.6906,0	0/1:54:29,25:29:1017:25:896:-64.7047,0,-75.5842	0/1:65:36,29:36:1276:29:1017:-72.2729,0,-95.5761	0/1:94:45,49:45:1550:49:1744:-128.947,0,-111.488	1/1:94:0,94:0:0:94:3288:-296.138,-28.2968,0	1/1:112:0,111:0:0:111:3962:-356.552,-33.4143,0	1/1:85:0,85:0:0:85:3024:-272.379,-25.5876,0	0/1:16:10,6:10:352:6:216:-14.974,0,-27.2017	0/1:45:23,22:23:808:22:792:-58.0593,0,-59.4938	1/1:31:0,31:0:0:31:1103:-99.5806,-9.33193,0	1/1:31:0,31:0:0:31:1106:-99.8222,-9.33193,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	0/1:38:17,21:17:608:21:752:-56.5671,0,-43.6129	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:108:50,58:50:1722:58:2068:-153.88,0,-122.75	0/1:88:45,43:45:1593:43:1532:-111.682,0,-117.164	0/1:127:81,46:81:2856:46:1644:-110.018,0,-219.049	1/1:84:0,84:0:0:84:2978:-268.251,-25.2865,0	1/1:103:2,101:2:72:101:3587:-316.193,-24.1694,0	0/1:59:29,30:29:971:30:1051:-77.1374,0,-69.93	1/1:308:0,307:0:0:307:10980:-987.725,-92.4162,0	0/1:198:81,117:81:2888:117:4147:-313.809,0,-200.553	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:216:1,215:1:36:215:7626:-682.772,-61.4242,0	0/1:127:78,49:78:2757:49:1739:-118.559,0,-210.141	0/1:111:48,63:48:1647:63:2254:-169.709,0,-115.097	0/1:14:8,5:8:284:5:180:-12.3121,0,-21.6646	0/1:13:9,4:9:320:4:144:-9.40023,0,-24.9563	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	1/1:14:0,14:0:0:14:485:-43.977,-4.21442,0	0/1:87:54,33:54:1878:33:1169:-79.3257,0,-143.106	0/1:186:92,94:92:3253:94:3338:-244.644,0,-237.001	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:85:1,84:1:36:84:2993:-266.002,-21.9893,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:122:50,72:50:1784:72:2539:-192.031,0,-124.114	0/1:23:15,8:15:536:8:269:-17.5946,0,-41.6511	0/1:25:15,10:15:536:10:356:-24.8555,0,-41.0491	1/1:133:0,133:0:0:133:4689:-422.169,-40.037,0	1/1:129:0,129:0:0:129:4623:-416.232,-38.8329,0	0/1:144:57,87:57:2024:87:3102:-236.021,0,-139.08	0/1:119:50,69:50:1760:69:2449:-184.754,0,-122.861	1/1:99:0,99:0:0:99:3514:-316.469,-29.802,0	0/1:154:67,87:67:2337:87:3119:-234.577,0,-164.232	0/1:13:6,7:6:197:7:248:-18.7508,0,-14.1377	0/1:117:41,76:41:1448:76:2705:-208.472,0,-95.3954	0/1:46:20,26:20:703:26:932:-70.3515,0,-49.7461	0/1:11:5,6:5:180:6:216:-16.4652,0,-13.2407	1/1:106:0,105:0:0:105:3744:-336.802,-31.6082,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:79:49,30:49:1683:30:1076:-73.3715,0,-127.969	1/1:74:0,74:0:0:74:2648:-238.566,-22.2762,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:171:0,170:0:0:170:6085:-547.39,-51.1751,0	0/1:147:61,85:61:2161:85:3038:-229.379,0,-150.485	0/1:51:5,46:5:180:46:1630:-131.634,0,-1.19953	1/1:77:0,77:0:0:77:2744:-247.203,-23.1793,0	1/1:157:1,156:1:36:156:5544:-495.22,-43.6634,0	1/1:98:0,98:0:0:98:3508:-315.93,-29.5009,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:67:0,67:0:0:67:2388:-215.178,-20.169,0	0/1:58:33,25:33:1184:25:896:-63.5006,0,-89.4086	0/1:31:17,14:17:604:14:496:-35.6423,0,-44.7286	0/1:124:54,70:54:1901:70:2452:-183.601,0,-134.038	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:131:0,130:0:0:130:4664:-419.557,-39.1339,0	0/1:77:31,46:31:1073:46:1648:-125.429,0,-73.6966	0/1:123:75,48:75:2657:48:1705:-116.705,0,-202.349	1/1:49:1,48:1:36:48:1704:-150.046,-11.1522,0	0/1:18:15,3:15:532:3:102:-4.09784,0,-42.7945	0/1:63:30,33:30:1056:33:1182:-87.7231,0,-76.386	0/1:71:36,35:36:1272:35:1256:-91.9722,0,-93.4098	1/1:190:1,189:1:32:189:6751:-604.464,-53.9964,0	1/1:73:0,73:0:0:73:2616:-235.683,-21.9752,0	1/1:28:0,28:0:0:28:1004:-90.6735,-8.42884,0	0/1:34:13,21:13:460:21:741:-56.7766,0,-31.5004	0/1:67:30,37:30:1060:37:1328:-99.6532,0,-75.5423	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:23:0,23:0:0:23:820:-74.122,-6.92369,0	0/1:51:33,18:33:1176:18:648:-43.2994,0,-90.7952	0/1:30:22,8:22:792:8:288:-17.2365,0,-62.5748	1/1:66:0,66:0:0:66:2341:-210.946,-19.868,0	1/1:50:0,50:0:0:50:1800:-162.271,-15.0515,0
chr04	32398152	.	A	C	13205.7	PASS	AB=0.311027;ABP=739.999;AC=34;AF=0.180851;AN=188;AO=761;CIGAR=1X;DP=7075;DPB=7075;DPRA=0.863499;EPP=4.04039;EPPR=13447.8;GTI=5;LEN=1;MEANALT=1.025;MQM=60;MQMR=59.9987;NS=94;NUMALT=1;ODDS=0.896059;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26886;QR=226516;RO=6311;RPL=0;RPP=1655.5;RPPR=13465;RPR=761;RUN=1;SAF=390;SAP=4.04039;SAR=371;SRF=6309;SRP=13689.8;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:242:242,0:242:8692:0:0:0,-72.8493,-782.268	0/0:164:164,0:164:5884:0:0:0,-49.3689,-529.669	0/1:21:15,6:15:540:6:212:-13.1032,0,-42.6149	0/1:28:19,9:19:684:9:311:-19.8949,0,-53.4615	0/1:53:36,17:36:1288:17:596:-38.011,0,-100.269	0/0:137:137,0:137:4928:0:0:0,-41.2411,-443.668	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/1:68:39,29:39:1385:29:1026:-72.1813,0,-104.477	0/1:97:47,50:47:1692:50:1740:-127.682,0,-123.367	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:53:24,29:24:864:29:1009:-75.1641,0,-62.128	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:44:22,22:22:792:22:775:-56.8259,0,-58.3604	0/1:78:61,17:61:2196:17:612:-31.9331,0,-174.425	0/1:82:61,21:61:2188:21:732:-41.517,0,-172.501	0/0:64:60,4:60:2151:4:144:0,-5.9523,-180.543	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:38:32,6:32:1148:6:216:-8.35137,0,-92.1907	0/0:244:244,0:244:8749:0:0:0,-73.4513,-787.396	0/1:117:96,21:96:3444:21:743:-31.9728,0,-274.952	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:176:176,0:176:6293:0:0:0,-52.9813,-566.462	0/1:71:64,7:64:2304:7:248:-1.29107,0,-186.247	0/1:62:48,14:48:1720:14:496:-26.3104,0,-136.422	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:182:104,78:104:3744:78:2776:-195.295,0,-282.371	0/0:55:50,5:50:1796:5:171:0,-0.831197,-146.197	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:81:80,1:80:2872:1:36:0,-20.7852,-255.118	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:86:61,25:61:2192:25:886:-54.1699,0,-171.657	0/1:50:16,34:16:576:34:1216:-94.6951,0,-37.1235	0/1:62:28,34:28:1004:34:1195:-89.1907,0,-72.012	0/0:137:137,0:137:4924:0:0:0,-41.2411,-443.308	0/0:114:114,0:114:4100:0:0:0,-34.3174,-369.175	0/1:113:95,18:95:3395:18:644:-24.2742,0,-271.748	0/1:48:43,5:43:1544:5:176:-1.73558,0,-124.804	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.728	0/1:32:22,10:22:788:10:360:-23.1113,0,-61.6118	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:129:116,13:116:4164:13:464:-3.26464,0,-336.109	0/0:45:43,2:43:1540:2:72:0,-6.70963,-132.056	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:114:114,0:114:4072:0:0:0,-34.3174,-366.668	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:45:36,9:36:1292:9:311:-14.7774,0,-103.037	0/0:109:109,0:109:3924:0:0:0,-32.8123,-353.351	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:200:200,0:200:7165:0:0:0,-60.206,-644.904	0/1:144:120,24:120:4293:24:852:-33.6521,0,-343.197	0/0:49:47,2:47:1688:2:72:0,-7.91375,-145.37	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:175:175,0:175:6280:0:0:0,-52.6802,-565.292	0/0:185:185,0:185:6640:0:0:0,-55.6905,-597.676	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:53:21,32:21:756:32:1112:-84.4313,0,-52.4126	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/1:48:41,7:41:1476:7:248:-8.21475,0,-118.687	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/0:90:82,8:82:2948:8:278:0,-1.73637,-240.197	0/1:72:57,15:57:2040:15:536:-26.9007,0,-162.198	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:72:62,10:62:2232:10:360:-11.0701,0,-179.469	0/1:56:47,9:47:1688:9:324:-12.6482,0,-135.349	0/0:157:156,0:156:5596:0:0:0,-46.9607,-503.401	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/1:72:25,47:25:900:47:1665:-128.461,0,-59.6469	0/1:102:55,47:55:1976:47:1667:-119.612,0,-147.41	0/0:30:29,0:29:1044:0:0:0,-8.72987,-93.915	0/0:88:88,0:88:3155:0:0:0,-26.4906,-284.174	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:92:72,19:72:2580:19:646:-30.7027,0,-204.696	0/1:77:33,44:33:1188:44:1563:-117.782,0,-84.0493	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.882	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.234
chr04	32398190	.	G	A	7829.3	PASS	AB=0.263001;ABP=988.023;AC=34;AF=0.180851;AN=188;AO=550;CIGAR=1X;DP=6593;DPB=6593;DPRA=0.786014;EPP=170.553;EPPR=13114.4;GTI=6;LEN=1;MEANALT=1.09756;MQM=60;MQMR=59.9939;NS=94;NUMALT=1;ODDS=1.41103;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=19643;QR=213630;RO=6038;RPL=550;RPP=1197.32;RPPR=13114.4;RPR=0;RUN=1;SAF=172;SAP=170.553;SAR=378;SRF=6038;SRP=13114.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1660:0:0:0,-14.1484,-149.688	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.031	0/0:227:227,0:227:8068:0:0:0,-68.3338,-726.147	0/0:160:160,0:160:5686:0:0:0,-48.1648,-511.863	0/1:21:15,6:15:514:6:212:-13.1032,0,-40.2622	0/1:27:18,9:18:636:9:320:-21.0145,0,-49.4402	0/1:45:36,9:36:1249:9:324:-15.9595,0,-99.1633	0/0:134:134,0:134:4784:0:0:0,-40.338,-430.718	0/0:102:102,0:102:3612:0:0:0,-30.7051,-325.29	0/0:81:81,0:81:2866:0:0:0,-24.3834,-258.178	0/1:55:35,20:35:1227:20:716:-48.2111,0,-94.1764	0/1:95:45,50:45:1600:50:1767:-130.715,0,-115.692	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.534	0/0:67:66,1:66:2330:1:36:0,-16.5707,-206.361	0/0:63:63,0:63:2214:0:0:0,-18.9649,-199.525	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/1:51:22,29:22:788:29:1032:-77.8409,0,-55.8923	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:44:22,22:22:784:22:780:-57.2777,0,-57.6386	0/1:71:60,11:60:2148:11:396:-14.6096,0,-172.214	0/1:77:57,20:57:1988:20:708:-40.8663,0,-156.013	0/0:59:58,1:58:2068:1:36:0,-14.1625,-182.793	0/0:95:95,0:95:3382:0:0:0,-28.5978,-304.596	0/0:26:26,0:26:901:0:0:0,-7.82678,-81.4022	0/1:35:29,6:29:1023:6:216:-9.25446,0,-81.8457	0/0:233:233,0:233:8256:0:0:0,-70.14,-743.06	0/1:117:94,23:94:3298:23:828:-39.6236,0,-261.82	0/0:32:32,0:32:1131:0:0:0,-9.63296,-102.098	0/0:169:169,0:169:5989:0:0:0,-50.8741,-539.122	0/1:70:62,8:62:2207:8:288:-5.19531,0,-177.823	0/1:57:46,11:46:1618:11:396:-18.824,0,-128.749	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:140:101,38:101:3568:38:1356:-80.1376,0,-279.126	0/1:52:47,5:47:1667:5:176:-0.53146,0,-134.663	0/0:41:41,0:41:1444:0:0:0,-12.3422,-130.256	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:79:78,1:78:2767:1:36:0,-20.1831,-245.674	0/0:27:27,0:27:942:0:0:0,-8.12781,-85.0923	0/1:84:60,24:60:2117:24:852:-51.7139,0,-165.511	0/1:30:16,14:16:563:14:504:-36.6672,0,-41.9683	0/1:44:25,18:25:887:18:644:-44.9866,0,-66.8442	0/0:133:133,0:133:4728:0:0:0,-40.037,-425.683	0/0:106:106,0:106:3764:0:0:0,-31.9092,-338.959	0/0:99:90,9:90:3170:9:320:0,-0.659613,-256.385	0/0:42:40,2:40:1415:2:72:0,-5.80654,-120.81	0/0:97:97,0:97:3434:0:0:0,-29.1999,-309.275	0/1:27:19,8:19:684:8:284:-17.7755,0,-53.7625	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:128:113,15:113:4012:15:540:-10.4047,0,-322.741	0/0:42:42,0:42:1469:0:0:0,-12.6433,-132.502	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:104:104,0:104:3636:0:0:0,-31.3071,-327.448	0/0:37:37,0:37:1298:0:0:0,-11.1381,-117.12	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:13:13,0:13:452:0:0:0,-3.91339,-41.0111	0/1:44:34,10:34:1195:10:360:-19.499,0,-94.6092	0/0:108:108,0:108:3851:0:0:0,-32.5112,-346.787	0/0:9:9,0:9:301:0:0:0,-2.70927,-27.4137	0/0:194:194,0:194:6869:0:0:0,-58.3998,-618.285	0/1:127:112,15:112:3982:15:532:-9.98228,0,-320.341	0/0:46:44,2:44:1542:2:72:0,-7.01066,-132.234	0/0:74:74,0:74:2594:0:0:0,-22.2762,-233.708	0/0:170:170,0:170:6013:0:0:0,-51.1751,-541.093	0/0:178:178,0:178:6265:0:0:0,-53.5833,-563.948	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.306	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:39:21,18:21:752:18:644:-46.5504,0,-56.2661	0/1:16:11,5:11:378:5:180:-11.7356,0,-29.5326	0/1:45:38,7:38:1356:7:244:-8.75308,0,-108.794	0/0:70:70,0:70:2476:0:0:0,-21.0721,-223.095	0/0:97:97,0:97:3432:0:0:0,-29.1999,-309.094	0/0:82:79,3:79:2770:3:108:0,-14.6093,-239.466	0/1:69:54,14:54:1920:14:500:-24.5065,0,-152.247	0/0:78:78,0:78:2764:0:0:0,-23.4803,-249.003	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:69:59,10:59:2103:10:356:-11.6102,0,-168.768	0/1:55:43,10:43:1532:10:360:-16.4299,0,-121.859	0/0:152:152,0:152:5350:0:0:0,-45.7566,-481.64	0/0:70:70,0:70:2464:0:0:0,-21.0721,-222.016	0/0:77:77,0:77:2708:0:0:0,-23.1793,-243.964	0/1:55:25,30:25:884:30:1080:-80.9566,0,-63.3217	0/1:76:53,23:53:1883:23:828:-51.9658,0,-146.87	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:81:81,0:81:2884:0:0:0,-24.3834,-259.798	0/0:70:70,0:70:2488:0:0:0,-21.0721,-224.174	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:89:70,19:70:2475:19:680:-34.7375,0,-196.213	0/1:52:31,21:31:1091:21:752:-52.3527,0,-82.8452	0/0:149:149,0:149:5200:0:0:0,-44.8535,-468.147	0/0:132:132,0:132:4656:0:0:0,-39.736,-419.207
chr04	32398552	.	A	T	76293	PASS	AB=0.546179;ABP=42.5193;AC=144;AF=0.765957;AN=188;AO=3599;CIGAR=1X;DP=4583;DPB=4583;DPRA=0;EPP=7593.94;EPPR=2072.86;GTI=0;LEN=1;MEANALT=1.03191;MQM=54.1153;MQMR=59.6687;NS=94;NUMALT=1;ODDS=2.94555;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127796;QR=35176;RO=981;RPL=3572;RPP=7585.38;RPPR=2072.86;RPR=27;RUN=1;SAF=3598;SAP=7809.46;SAR=1;SRF=981;SRP=2133.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:58:0,58:0:0:58:2080:-186.832,-17.4597,0	1/1:18:0,18:0:0:18:629:-56.6054,-5.41854,0	1/1:90:0,90:0:0:90:3219:-287.088,-27.0927,0	1/1:94:0,94:0:0:94:3330:-299.54,-28.2968,0	0/1:35:8,27:8:288:27:964:-76.0691,0,-15.7026	0/1:19:7,12:7:252:12:428:-32.9917,0,-17.3094	0/1:70:28,42:28:1004:42:1486:-112.775,0,-69.5944	1/1:74:0,74:0:0:74:2656:-238.081,-22.2762,0	1/1:52:0,52:0:0:52:1847:-165.279,-15.6536,0	1/1:41:0,41:0:0:41:1460:-131.519,-12.3422,0	0/1:22:9,13:9:324:13:468:-35.8064,0,-22.8832	0/1:59:27,32:27:964:32:1121:-83.0959,0,-69.2016	1/1:38:0,38:0:0:38:1356:-121.488,-11.4391,0	1/1:31:0,31:0:0:31:1087:-97.6673,-9.33193,0	1/1:42:0,42:0:0:42:1501:-134.699,-12.6433,0	1/1:24:0,24:0:0:24:828:-74.2222,-7.22472,0	0/1:9:4,5:4:144:5:180:-13.8012,0,-10.6043	1/1:13:0,13:0:0:13:460:-41.4554,-3.91339,0	0/1:27:23,4:23:824:4:144:-5.1607,0,-66.3391	0/1:87:29,58:29:1040:58:2056:-158.761,0,-67.7177	0/1:110:68,42:68:2432:42:1485:-100.459,0,-186.009	0/1:55:24,31:24:860:31:1108:-83.3377,0,-61.1643	1/1:87:0,87:0:0:87:3101:-278.445,-26.1896,0	1/1:65:4,61:4:144:61:2148:-178.766,-6.25333,0	0/1:46:13,33:13:468:33:1158:-90.2731,0,-28.6123	1/1:157:4,153:4:144:153:5416:-473.892,-33.9481,0	0/1:133:56,77:56:2012:77:2725:-203.956,0,-141.273	1/1:11:0,11:0:0:11:383:-34.633,-3.31133,0	1/1:276:2,273:2:72:273:9712:-865.066,-76.3063,0	0/1:56:30,26:30:1080:26:931:-66.9732,0,-80.6371	0/1:57:27,30:27:972:30:1072:-79.5653,0,-70.6322	0/1:7:3,4:3:108:4:144:-11.1875,0,-7.96796	0/1:24:17,7:17:612:7:252:-15.6412,0,-48.1795	0/1:6:3,3:3:108:3:108:-8.24366,0,-8.26899	0/1:8:6,2:6:216:2:68:-4.03742,0,-17.374	1/1:13:0,13:0:0:13:464:-41.9901,-3.91339,0	0/1:124:62,61:62:2232:61:2162:-157.241,0,-163.754	0/1:65:28,37:28:1008:37:1315:-98.7976,0,-71.4694	1/1:16:0,16:0:0:16:561:-50.6661,-4.81648,0	1/1:4:0,4:0:0:4:140:-12.9186,-1.20412,0	1/1:91:1,89:1:36:89:3181:-281.553,-23.854,0	1/1:16:0,16:0:0:16:559:-50.5696,-4.81648,0	0/1:103:34,69:34:1224:69:2440:-188.127,0,-79.44	0/1:20:16,4:16:572:4:144:-7.28342,0,-45.7928	0/1:42:26,16:26:928:16:576:-39.4565,0,-71.195	1/1:95:0,95:0:0:95:3376:-302.82,-28.5979,0	1/1:47:0,47:0:0:47:1659:-148.155,-14.1484,0	0/1:74:33,41:33:1184:41:1468:-109.95,0,-84.5746	0/1:51:17,34:17:612:34:1208:-93.5941,0,-39.9743	1/1:51:0,51:0:0:51:1804:-162.275,-15.3525,0	0/1:88:46,42:46:1652:42:1500:-108.715,0,-122.476	0/1:8:7,1:7:252:1:36:-1.18744,0,-20.6207	0/1:36:15,21:15:536:21:756:-56.9934,0,-37.7262	0/1:52:13,39:13:468:39:1379:-108.704,0,-26.8052	0/1:7:3,4:3:108:4:144:-11.1729,0,-7.96796	1/1:66:0,66:0:0:66:2345:-211.026,-19.868,0	1/1:42:0,42:0:0:42:1474:-132.731,-12.6433,0	1/1:2:0,2:0:0:2:64:-6.07793,-0.60206,0	1/1:11:0,11:0:0:11:392:-35.5412,-3.31133,0	0/1:55:23,32:23:828:32:1140:-85.8311,0,-58.2829	1/1:43:0,43:0:0:43:1518:-136.735,-12.9443,0	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:39:0,39:0:0:39:1394:-125.486,-11.7402,0	0/1:67:25,42:25:888:42:1482:-112.298,0,-60.0691	1/1:28:0,28:0:0:28:997:-89.6542,-8.42884,0	1/1:38:0,38:0:0:38:1355:-121.992,-11.4391,0	1/1:60:2,58:2:72:58:2056:-178.146,-11.2251,0	1/1:65:1,64:1:36:64:2280:-201.469,-15.9687,0	1/1:19:0,19:0:0:19:684:-61.7919,-5.71957,0	1/1:12:0,12:0:0:12:428:-38.7651,-3.61236,0	0/1:37:16,21:16:572:21:743:-56.0302,0,-40.6753	0/1:7:3,4:3:108:4:144:-11.1108,0,-7.96796	0/1:69:31,38:31:1108:38:1364:-101.73,0,-79.2599	1/1:41:0,41:0:0:41:1413:-126.799,-12.3422,0	1/1:120:0,120:0:0:120:4255:-382.1,-36.1236,0	0/1:63:27,36:27:972:36:1279:-96.1993,0,-68.8307	0/1:41:11,30:11:396:30:1068:-82.7958,0,-23.6323	1/1:52:0,52:0:0:52:1856:-166.462,-15.6536,0	0/1:13:3,10:3:108:10:360:-28.7486,0,-6.16178	0/1:42:23,19:23:828:19:672:-48.0841,0,-62.1916	0/1:55:16,39:16:576:39:1369:-106.274,0,-35.6101	1/1:104:0,104:0:0:104:3720:-333.772,-31.3071,0	1/1:34:0,34:0:0:34:1222:-110.014,-10.235,0	1/1:29:0,29:0:0:29:1035:-93.2291,-8.72987,0	0/1:13:5,8:5:180:8:271:-20.792,0,-12.6387	0/1:79:42,37:42:1481:37:1290:-92.3106,0,-109.796	1/1:11:0,11:0:0:11:385:-34.5116,-3.31133,0	1/1:38:0,38:0:0:38:1356:-121.729,-11.4391,0	1/1:38:0,38:0:0:38:1351:-121.556,-11.4391,0	1/1:15:0,15:0:0:15:536:-48.3787,-4.51545,0	0/1:50:30,20:30:1076:20:696:-47.8203,0,-82.0998	0/1:42:30,12:30:1067:12:423:-25.6511,0,-83.698	1/1:5:0,5:0:0:5:180:-16.5401,-1.50515,0	1/1:32:0,32:0:0:32:1144:-103.184,-9.63296,0
chr04	32399987	.	A	T	71630.7	PASS	AB=0.486085;ABP=13.8878;AC=45;AF=0.239362;AN=188;AO=3192;CIGAR=1X;DP=14432;DPB=14432;DPRA=1.21662;EPP=155.854;EPPR=401.083;GTI=2;LEN=1;MEANALT=1.06667;MQM=59.9427;MQMR=59.9816;NS=94;NUMALT=1;ODDS=2.78539;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113956;QR=401484;RO=11233;RPL=3174;RPP=6778.89;RPPR=23937;RPR=18;RUN=1;SAF=1341;SAP=179.953;SAR=1851;SRF=4850;SRP=457.31;SRR=6383;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.501	0/0:152:151,1:151:5395:1:36:0,-42.1673,-482.092	0/0:250:250,0:250:8888:0:0:0,-75.2575,-799.908	0/0:236:236,0:236:8452:0:0:0,-71.0431,-760.189	0/1:140:62,78:62:2228:78:2773:-207.666,0,-158.64	0/1:102:60,42:60:2139:42:1508:-105.31,0,-162.072	0/1:169:83,86:83:2968:86:3092:-227.633,0,-216.479	0/0:326:324,2:324:11592:2:68:0,-91.6781,-1036.69	0/0:224:224,0:224:8011:0:0:0,-67.4307,-721.011	0/0:185:185,0:185:6627:0:0:0,-55.6905,-596.508	0/1:138:79,58:79:2804:58:2075:-145.42,0,-210.998	0/1:187:84,103:84:3020:103:3634:-270.975,0,-215.737	0/0:190:189,0:189:6727:0:0:0,-56.8947,-605.144	0/0:158:158,0:158:5623:0:0:0,-47.5627,-506.192	0/0:148:148,0:148:5247:0:0:0,-44.5524,-472.367	0/0:153:153,0:153:5488:0:0:0,-46.0576,-494.046	0/1:144:71,73:71:2504:73:2607:-191.529,0,-182.261	0/0:106:106,0:106:3744:0:0:0,-31.9092,-337.16	0/1:78:44,33:44:1564:33:1176:-82.6082,0,-117.513	0/1:237:138,98:138:4960:98:3515:-245.156,0,-375.144	0/1:283:135,148:135:4852:148:5280:-390.014,0,-351.64	0/1:60:18,42:18:640:42:1493:-116.601,0,-39.8675	0/0:128:127,1:127:4544:1:36:0,-34.9336,-405.529	0/0:170:156,14:156:5588:14:504:0,-5.47701,-457.344	0/1:102:57,45:57:2036:45:1611:-114.574,0,-152.807	0/0:441:440,1:440:15762:1:36:0,-129.156,-1414.67	0/1:337:206,131:206:7363:131:4695:-321.26,0,-561.259	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.327	0/0:327:327,0:327:11692:0:0:0,-98.4368,-1052.15	0/1:136:63,73:63:2242:73:2624:-195.465,0,-160.082	0/1:148:85,63:85:3020:63:2243:-157.57,0,-227.435	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:430:206,224:206:7362:224:7970:-587.875,0,-533.162	0/1:138:81,57:81:2900:57:2040:-142.33,0,-219.694	0/0:116:116,0:116:4137:0:0:0,-34.9195,-372.505	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:161:157,4:157:5588:4:144:0,-35.1522,-489.731	0/0:67:66,0:66:2372:0:0:0,-19.868,-213.378	0/1:278:120,158:120:4299:158:5599:-420.345,0,-303.4	0/1:184:92,92:92:3293:92:3300:-241.829,0,-241.198	0/1:163:87,76:87:3111:76:2732:-197.018,0,-231.149	0/0:180:180,0:180:6455:0:0:0,-54.1854,-581.034	0/0:170:170,0:170:6068:0:0:0,-51.1751,-546.222	0/1:219:122,97:122:4364:97:3441:-243.967,0,-327.009	0/1:134:79,55:79:2836:55:1940:-134.536,0,-215.14	0/0:238:237,1:237:8478:1:36:0,-68.0469,-759.422	0/1:165:75,90:75:2676:90:3196:-238.193,0,-191.416	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:161:101,60:101:3615:60:2147:-145.031,0,-277.089	0/1:65:40,25:40:1424:25:896:-61.3934,0,-108.891	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/0:165:164,0:164:5864:0:0:0,-49.3689,-527.512	0/0:72:72,0:72:2554:0:0:0,-21.6742,-230.108	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:140:66,74:66:2350:74:2656:-197.14,0,-169.614	0/0:198:196,2:196:6994:2:72:0,-52.7672,-622.689	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:223:223,0:223:7979:0:0:0,-67.1297,-718.129	0/1:220:114,106:114:4075:106:3799:-275.88,0,-300.71	0/0:122:115,7:115:4102:7:248:0,-14.0615,-346.701	0/0:134:133,1:133:4747:1:36:0,-36.7397,-423.014	0/0:284:283,1:283:10132:1:36:0,-81.8942,-908.207	0/0:130:127,3:127:4544:3:108:0,-29.0587,-399.052	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	0/1:160:80,80:80:2868:80:2863:-209.742,0,-210.192	0/1:32:14,18:14:496:18:648:-49.0189,0,-35.3413	0/1:83:51,32:51:1823:32:1144:-78.2807,0,-139.365	0/0:109:109,0:109:3903:0:0:0,-32.8123,-351.463	0/0:270:268,2:268:9548:2:72:0,-74.4414,-852.444	0/1:212:119,93:119:4272:93:3312:-234.479,0,-320.839	0/1:214:131,82:131:4684:82:2925:-199.001,0,-357.242	0/0:178:175,3:175:6272:3:108:0,-43.5082,-554.498	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:158:80,78:80:2868:78:2788:-203.597,0,-210.794	0/1:169:67,102:67:2400:102:3660:-278.102,0,-165.383	0/0:347:347,0:347:12395:0:0:0,-104.457,-1115.39	0/0:166:166,0:166:5945:0:0:0,-49.971,-535.145	0/0:159:159,0:159:5694:0:0:0,-47.8638,-512.565	0/1:182:81,101:81:2880:101:3619:-271.123,0,-204.648	0/1:305:165,140:165:5907:140:4992:-357.561,0,-439.924	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/0:180:180,0:180:6412:0:0:0,-54.1854,-577.159	0/0:144:144,0:144:5132:0:0:0,-43.3483,-462.022	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.618	0/1:154:75,79:75:2669:79:2828:-208.4,0,-194.096	0/1:184:65,119:65:2327:119:4235:-325.942,0,-154.3	0/0:189:188,1:188:6739:1:36:0,-53.2964,-602.984	0/0:254:253,1:253:9062:1:32:0,-73.2623,-812.355
chr04	32401145	.	G	A	25563.3	PASS	AB=0.537906;ABP=37.5814;AC=45;AF=0.239362;AN=188;AO=1498;CIGAR=1X;DP=5596;DPB=5596;DPRA=1.3473;EPP=3255.88;EPPR=8895.19;GTI=1;LEN=1;MEANALT=1.03922;MQM=59.9513;MQMR=59.9702;NS=94;NUMALT=1;ODDS=0.720398;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53564;QR=146414;RO=4095;RPL=1498;RPP=3255.88;RPPR=8895.19;RPR=0;RUN=1;SAF=0;SAP=3255.88;SAR=1498;SRF=0;SRP=8895.19;SRR=4095;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:67:66,1:66:2368:1:36:0,-16.5707,-209.78	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/0:130:130,0:130:4649:0:0:0,-39.1339,-418.571	0/1:33:21,12:21:752:12:428:-28.9248,0,-58.0723	0/1:39:19,20:19:680:20:720:-53.3886,0,-49.789	0/1:61:30,31:30:1076:31:1112:-82.0285,0,-78.79	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:27:13,14:13:468:14:504:-37.5679,0,-34.3318	0/1:46:22,24:22:788:24:864:-64.2352,0,-57.3974	0/0:34:34,0:34:1202:0:0:0,-10.235,-108.484	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/1:34:19,15:19:676:15:536:-38.3316,0,-50.933	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:113:43,70:43:1524:70:2508:-191.955,0,-103.437	0/1:100:42,58:42:1496:58:2076:-157.008,0,-104.832	0/1:77:35,42:35:1252:42:1485:-110.763,0,-89.8058	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:78:76,2:76:2732:2:72:0,-16.6436,-239.286	0/1:48:17,31:17:612:31:1096:-84.4999,0,-40.964	0/0:241:239,2:239:8552:2:72:0,-65.7115,-762.805	0/1:170:73,96:73:2612:96:3410:-256.027,0,-184.242	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:160:160,0:160:5720:0:0:0,-48.1648,-514.916	0/1:78:34,44:34:1220:44:1569:-118.015,0,-86.6265	0/1:133:70,62:70:2512:62:2220:-159.964,0,-186.236	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:35:18,17:18:644:17:597:-43.5198,0,-47.7545	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:11:8,3:8:288:3:104:-6.39148,0,-22.9561	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/1:68:26,42:26:932:42:1512:-115.9,0,-63.7288	0/1:149:81,68:81:2892:68:2420:-173.201,0,-215.663	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/1:104:37,67:37:1324:67:2400:-184.95,0,-88.155	0/1:31:11,20:11:396:20:712:-55.0743,0,-26.6508	0/1:24:11,13:11:396:13:464:-34.8728,0,-28.758	0/0:73:73,0:73:2620:0:0:0,-21.9752,-234.858	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/1:128:58,70:58:2076:70:2512:-187.792,0,-148.578	0/1:68:27,41:27:952:41:1467:-111.856,0,-65.5251	0/0:77:76,1:76:2700:1:36:0,-19.581,-239.647	0/1:78:28,50:28:1004:50:1792:-138.082,0,-67.1955	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:84:32,52:32:1152:52:1872:-143.473,0,-78.7036	0/1:70:47,23:47:1668:23:828:-53.772,0,-129.335	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:78:36,42:36:1276:42:1512:-112.894,0,-91.6627	0/0:89:88,1:88:3128:1:36:0,-23.1934,-278.15	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:120:119,1:119:4260:1:36:0,-32.5253,-379.893	0/1:137:66,71:66:2364:71:2544:-187.97,0,-171.777	0/1:50:43,7:43:1540:7:252:-7.97746,0,-123.842	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:113:113,0:113:4048:0:0:0,-34.0164,-364.507	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.464	0/0:24:24,0:24:843:0:0:0,-7.22472,-76.188	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:43:24,19:24:856:19:680:-48.5849,0,-64.4168	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:100:28,72:28:1000:72:2557:-200.276,0,-60.2124	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:154:154,0:154:5496:0:0:0,-46.3586,-494.769	0/1:85:37,48:37:1328:48:1709:-128.504,0,-94.2347	0/1:88:33,55:33:1180:55:1954:-149.645,0,-80.0174	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	0/1:50:26,24:26:932:24:860:-62.6703,0,-69.1474	0/1:51:31,20:31:1108:20:716:-49.4152,0,-84.6785	0/0:108:107,0:107:3832:0:0:0,-32.2102,-344.717	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.045	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:40:24,16:24:855:16:576:-40.1338,0,-65.2286	0/1:48:24,24:24:864:24:864:-63.6331,0,-63.6331	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:86:40,46:40:1412:46:1652:-123.071,0,-101.489	0/1:29:8,21:8:288:21:756:-59.6374,0,-17.5375	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.759	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052
chr04	32402618	.	CTT	GTT,GTG	129063	PASS	AB=0.574329,0.419144;ABP=135.361,159.624;AC=143,43;AF=0.768817,0.231183;AN=186;AO=4905,1169;CIGAR=1X2M,1X1M1X;DP=6114;DPB=6114;DPRA=0,1.10422;EPP=10524.2,2506.84;EPPR=0;GTI=5;LEN=1,3;MEANALT=1.94624,2.36538;MQM=59.9113,57.3695;MQMR=0;NS=93;NUMALT=2;ODDS=0.406762;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=174879,38489;QR=0;RO=0;RPL=15,4;RPP=10524.2,2506.84;RPPR=0;RPR=4890,1165;RUN=1,1;SAF=0,0;SAP=10654.1,2541.46;SAR=4905,1169;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:76:0,75,0:0:0:75,0:2672,0:-240.472,-22.5773,0,-240.472,-22.5773,-240.472	1/1:73:0,72,0:0:0:72,0:2579,0:-232,-21.6742,0,-232,-21.6742,-232	1/1:157:0,155,2:0:0:155,2:5496,61:-494.149,-46.6597,0,-489.263,-41.4678,-488.661	1/2:30:0,20,10:0:0:20,10:716,335:-85.8214,-27.4165,-21.3959,-58.7471,0,-55.7368	1/2:30:0,16,14:0:0:16,14:572,462:-84.3204,-37.6661,-32.8497,-46.9969,0,-42.7825	1/2:50:0,34,15:0:0:34,15:1203,483:-136.796,-38.7863,-28.5513,-98.057,0,-93.5416	1/1:109:0,108,1:0:0:108,1:3868,33:-347.982,-32.5112,0,-345.314,-29.5131,-345.013	1/1:61:0,61,0:0:0:61,0:2175,0:-196.016,-18.3628,0,-196.016,-18.3628,-196.016	1/1:74:0,73,0:0:0:73,0:2603,0:-234.284,-21.9752,0,-234.284,-21.9752,-234.284	1/2:65:0,38,27:0:0:38,27:1328,920:-182.999,-74.9726,-63.5334,-108.37,0,-100.242	1/2:70:0,37,32:0:0:37,32:1302,1072:-192.266,-86.2664,-75.1283,-106.135,0,-96.5023	1/1:71:0,70,1:0:0:70,1:2513,21:-226.21,-21.0721,0,-224.623,-19.2732,-224.322	1/1:89:0,88,0:0:0:88,0:3128,0:-281.514,-26.4906,0,-281.514,-26.4906,-281.514	1/1:84:0,84,0:0:0:84,0:2993,0:-269.601,-25.2865,0,-269.601,-25.2865,-269.601	1/1:43:0,43,0:0:0:43,0:1525,0:-137.541,-12.9443,0,-137.541,-12.9443,-137.541	1/2:78:0,45,33:0:0:45,33:1616,1103:-219.907,-88.0654,-74.519,-132.184,0,-122.25	1/1:73:0,72,1:0:0:72,1:2549,21:-229.425,-21.6742,0,-227.838,-19.8752,-227.537	1/2:24:0,15,9:0:0:15,9:540,299:-68.5651,-24.4862,-19.9708,-44.4211,0,-41.7118	1/2:65:0,43,22:0:0:43,22:1538,727:-184.288,-59.073,-46.1287,-125.555,0,-118.932	1/2:98:0,58,39:0:0:58,39:2067,1283:-272.009,-103.551,-86.0917,-168.544,0,-156.804	1/2:62:0,28,34:0:0:28,34:999,1096:-169.651,-88.1951,-79.7663,-81.7965,0,-71.5615	1/1:45:0,45,0:0:0:45,0:1598,0:-144.028,-13.5464,0,-144.028,-13.5464,-144.028	1/2:48:0,43,5:0:0:43,5:1521,164:-137.484,-13.578,-0.633733,-124.237,0,-122.732	1/2:25:0,11,14:0:0:11,14:396,455:-69.2436,-36.9162,-33.6049,-32.6714,0,-28.457	1/1:194:0,190,0:0:0:190,0:6803,0:-612.084,-57.1957,0,-612.084,-57.1957,-612.084	1/2:80:0,34,45:0:0:34,45:1223,1477:-217.559,-117.761,-107.526,-99.8599,0,-86.3136	1/1:38:0,37,1:0:0:37,1:1291,28:-116.206,-11.1381,0,-113.99,-8.64023,-113.688	1/1:140:0,140,0:0:0:140,0:5000,0:-450.143,-42.1442,0,-450.143,-42.1442,-450.143	1/2:89:0,47,41:0:0:47,41:1668,1331:-242.302,-106.384,-92.2351,-136.003,0,-123.661	1/2:66:0,33,31:0:0:33,31:1168,1004:-176.038,-80.8834,-70.9494,-95.2354,0,-85.9035	1/2:6:0,4,2:0:0:4,2:144,70:-17.164,-5.38453,-4.18041,-12.1095,0,-11.5074	1/2:8:0,6,2:0:0:6,2:216,70:-23.6772,-6.04527,-4.23909,-17.9843,0,-17.3823	1/2:11:0,9,2:0:0:9,2:316,62:-31.0364,-5.28431,-2.57504,-26.0694,0,-25.4674	.:.:.:.:.:.:.:.	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:191:0,92,99:0:0:92,99:3287,3341:-538.375,-270.375,-242.681,-268.346,0,-238.544	1/2:117:0,71,44:0:0:71,44:2531,1449:-323.345,-117.016,-95.6424,-206.371,0,-193.126	1/1:58:0,58,0:0:0:58,0:2075,0:-187.02,-17.4597,0,-187.02,-17.4597,-187.02	1/1:3:0,2,0:0:0:2,0:72,0:-6.55017,-0.60206,0,-6.55017,-0.60206,-6.55017	1/1:102:0,100,1:0:0:100,1:3564,36:-320.663,-30.103,0,-317.726,-27.108,-317.425	1/1:26:0,26,0:0:0:26,0:921,0:-83.2052,-7.82678,0,-83.2052,-7.82678,-83.2052	1/2:71:0,38,33:0:0:38,33:1350,1060:-195.482,-85.4581,-74.019,-110.36,0,-100.426	1/2:64:0,36,28:0:0:36,28:1283,939:-180.947,-76.3557,-65.5186,-104.936,0,-96.5067	1/2:58:0,36,20:0:0:36,20:1266,647:-154.779,-51.7061,-40.869,-103.142,0,-97.1214	1/1:41:0,40,1:0:0:40,1:1437,21:-129.414,-12.0412,0,-127.829,-10.2423,-127.528	1/1:73:0,73,0:0:0:73,0:2607,0:-234.878,-21.9752,0,-234.878,-21.9752,-234.878	1/2:101:0,63,38:0:0:63,38:2260,1217:-281.697,-97.3315,-78.3666,-184.698,0,-173.259	1/2:78:0,44,33:0:0:44,33:1584,1061:-213.115,-83.8445,-70.5992,-129.351,0,-119.417	1/1:99:0,97,0:0:0:97,0:3460,0:-311.358,-29.1999,0,-311.358,-29.1999,-311.358	1/2:57:0,38,19:0:0:38,19:1368,616:-161.189,-49.5419,-38.1028,-111.982,0,-106.262	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:70:0,46,24:0:0:46,24:1640,770:-195.993,-62.284,-48.4366,-134.041,0,-126.817	1/2:18:0,14,4:0:0:14,4:497,140:-52.2381,-11.7391,-7.52467,-40.8499,0,-39.6458	1/2:9:0,4,5:0:0:4,5:144,147:-23.7924,-12.0134,-10.8093,-12.1095,0,-10.6043	1/1:63:0,63,0:0:0:63,0:2260,0:-203.663,-18.9649,0,-203.663,-18.9649,-203.663	1/1:45:0,44,0:0:0:44,0:1580,0:-142.239,-13.2453,0,-142.239,-13.2453,-142.239	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:14:0,14,0: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chr04	32402632	.	G	A	20001	PASS	AB=0.417598;ABP=166.555;AC=43;AF=0.231183;AN=186;AO=1167;CIGAR=1X;DP=6178;DPB=6178;DPRA=1.04964;EPP=1942.71;EPPR=8995.42;GTI=4;LEN=1;MEANALT=1.02128;MQM=57.4482;MQMR=59.9067;NS=93;NUMALT=1;ODDS=1.32468;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41781;QR=178588;RO=5008;RPL=1094;RPP=1942.71;RPPR=8995.42;RPR=73;RUN=1;SAF=0;SAP=2537.12;SAR=1167;SRF=0;SRP=10877.7;SRR=5008;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.589	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.191	0/0:157:155,2:155:5533:2:72:0,-40.425,-490.239	0/1:31:21,10:21:748:10:360:-23.2067,0,-58.1544	0/1:31:17,14:17:595:14:504:-36.3294,0,-44.5447	0/1:51:34,16:34:1224:16:576:-36.9022,0,-95.2194	0/0:111:110,1:110:3883:1:36:0,-29.8161,-346.066	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/1:65:38,27:38:1338:27:972:-68.2022,0,-101.145	0/1:72:40,32:40:1428:32:1148:-81.2664,0,-107.143	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.488	0/0:91:91,0:91:3230:0:0:0,-27.3937,-290.923	0/0:85:85,0:85:3047:0:0:0,-25.5875,-274.459	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:78:45,33:45:1616:33:1177:-80.8209,0,-122.25	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.874	0/1:25:17,8:17:603:8:284:-18.3693,0,-47.0738	0/1:64:42,22:42:1500:22:792:-52.2424,0,-115.735	0/1:99:59,40:59:2108:40:1436:-99.0716,0,-160.169	0/1:61:27,34:27:959:34:1216:-90.7037,0,-68.2626	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.434	0/1:50:45,5:45:1616:5:176:-1.13352,0,-130.669	0/1:25:11,14:11:396:14:504:-38.0404,0,-28.457	0/0:196:196,0:196:6933:0:0:0,-59.0019,-623.956	0/1:82:34,48:34:1215:48:1700:-125.687,0,-84.9713	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:147:147,0:147:5249:0:0:0,-44.2514,-472.543	0/1:92:51,41:51:1823:41:1472:-103.354,0,-136.619	0/1:64:34,30:34:1215:30:1076:-77.6647,0,-90.3898	0/1:6:4,2:4:144:2:72:-4.36981,0,-11.5074	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:11:9,2:9:324:2:72:-3.51093,0,-26.1941	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:197:96,101:96:3431:101:3623:-266.221,0,-249.692	0/1:119:75,44:75:2645:44:1580:-106.49,0,-202.474	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0667	0/0:101:99,2:99:3551:2:72:0,-24.3863,-313.779	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:71:39,32:39:1396:32:1140:-80.644,0,-104.566	0/1:62:35,27:35:1239:27:968:-68.7435,0,-93.1498	0/1:57:37,20:37:1332:20:716:-46.21,0,-103.024	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.976	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.545	0/1:100:62,38:62:2207:38:1368:-91.1336,0,-168.792	0/1:77:44,33:44:1563:33:1180:-81.5748,0,-117.779	0/0:101:101,0:101:3579:0:0:0,-30.404,-322.307	0/1:57:38,19:38:1364:19:676:-43.4344,0,-105.902	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:69:45,24:45:1604:24:864:-56.8346,0,-123.879	0/1:18:14,4:14:495:4:144:-7.89257,0,-39.4645	0/1:9:4,5:4:144:5:161:-12.097,0,-10.6043	0/0:62:61,0:61:2180:0:0:0,-18.3628,-196.254	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:34:21,13:21:752:13:468:-31.8988,0,-57.7689	0/0:135:135,0:135:4786:0:0:0,-40.639,-430.271	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:166:166,0:166:5923:0:0:0,-49.971,-533.175	0/1:146:91,55:91:3268:55:1976:-132.288,0,-250.389	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.265	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.36	0/0:55:51,4:51:1810:4:144:0,-3.24543,-149.869	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:64:40,24:40:1428:24:860:-58.385,0,-109.521	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:92:47,45:47:1688:45:1612:-115.877,0,-124.509	0/0:37:37,0:37:1306:0:0:0,-11.1381,-117.84	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.781	0/1:92:58,34:58:2063:34:1220:-81.7755,0,-158.16	0/1:45:30,15:30:1080:15:540:-34.111,0,-83.9583	0/0:114:114,0:114:4075:0:0:0,-34.3174,-366.927	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:65:39,26:39:1400:26:917:-62.6706,0,-106.732	0/1:66:37,29:37:1324:29:1036:-73.6368,0,-99.5932	0/0:101:101,0:101:3598:0:0:0,-30.404,-324.027	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.553	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/1:97:57,40:57:2044:40:1436:-100.24,0,-155.032	0/1:137:70,67:70:2478:67:2404:-175.321,0,-182.03	0/0:39:38,0:38:1347:0:0:0,-11.4391,-121.306	0/0:80:80,0:80:2846:0:0:0,-24.0824,-256.333	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.877	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.083	0/1:102:68,34:68:2424:34:1207:-76.1128,0,-187.655	0/1:59:17,42:17:603:42:1500:-116.262,0,-36.8387	0/0:26:26,0:26:904:0:0:0,-7.82678,-81.6719	0/0:97:97,0:97:3442:0:0:0,-29.1999,-309.988
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chr04	32402808	.	G	A	28420.9	PASS	AB=0.490407;ABP=5.75999;AC=43;AF=0.233696;AN=184;AO=1700;CIGAR=1X;DP=7387;DPB=7387;DPRA=1.20654;EPP=3659.85;EPPR=12235.2;GTI=0;LEN=1;MEANALT=1.01923;MQM=59.9882;MQMR=59.9404;NS=92;NUMALT=1;ODDS=1.04222;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60799;QR=203532;RO=5685;RPL=1696;RPP=3659.85;RPPR=12235.2;RPR=4;RUN=1;SAF=0;SAP=3694.51;SAR=1700;SRF=0;SRP=12347.8;SRR=5685;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:116:116,0:116:4153:0:0:0,-34.9195,-373.951	0/1:53:32,21:32:1152:21:748:-51.6907,0,-88.0309	0/1:71:43,28:43:1544:28:985:-67.5884,0,-117.88	0/1:72:41,31:41:1472:31:1112:-78.7172,0,-111.102	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:78:77,1:77:2760:1:30:0,-20.4808,-245.642	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.473	0/1:54:24,30:24:851:30:1076:-80.8972,0,-60.6538	0/1:87:43,44:43:1536:44:1561:-114.583,0,-112.343	0/0:88:88,0:88:3139:0:0:0,-26.4906,-282.735	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:91:91,0:91:3251:0:0:0,-27.3937,-292.811	0/0:51:51,0:51:1814:0:0:0,-15.3525,-163.54	0/1:50:23,27:23:820:27:972:-72.7464,0,-59.071	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:44:20,24:20:716:24:864:-64.8372,0,-51.5224	0/1:138:72,65:72:2588:65:2313:-166.976,0,-191.715	0/1:126:38,88:38:1364:88:3133:-244.264,0,-85.1309	0/1:79:21,58:21:756:58:2069:-162.698,0,-44.5859	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.832	0/0:62:59,3:59:2120:3:108:0,-8.58869,-180.864	0/1:38:15,23:15:540:23:828:-63.4004,0,-37.4974	0/0:258:258,0:258:9255:0:0:0,-77.6657,-832.91	0/1:183:93,90:93:3336:90:3221:-235.022,0,-245.367	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:233:232,1:232:8324:1:36:0,-66.5417,-745.567	0/1:121:56,65:56:1984:65:2336:-174.075,0,-142.405	0/1:92:60,32:60:2156:32:1148:-75.9351,0,-166.612	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:235:112,123:112:3995:123:4415:-326.775,0,-288.942	0/1:107:47,60:47:1692:60:2147:-161.287,0,-120.357	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.571	.:.:.:.:.:.:.:.	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.048	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:114:44,70:44:1567:70:2495:-190.485,0,-107.003	0/1:101:53,48:53:1896:48:1728:-125.401,0,-140.342	0/1:69:35,34:35:1252:34:1220:-89.3357,0,-92.214	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.112	0/0:77:77,0:77:2753:0:0:0,-23.1793,-248.01	0/1:154:87,67:87:3096:67:2382:-168.276,0,-232.508	0/1:65:36,29:36:1292:29:1029:-73.3551,0,-97.0168	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/1:56:23,33:23:828:33:1188:-90.3709,0,-57.9864	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:78:45,33:45:1607:33:1181:-83.1174,0,-121.415	0/1:38:30,8:30:1076:8:284:-14.4642,0,-85.7137	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:69:68,1:68:2428:1:36:0,-17.1728,-215.178	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:54:29,25:29:1044:25:892:-64.3441,0,-78.0192	0/0:134:134,0:134:4799:0:0:0,-40.338,-431.979	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:155:154,1:154:5524:1:36:0,-43.0614,-493.686	0/1:141:76,65:76:2732:65:2336:-168.054,0,-203.677	0/0:48:47,1:47:1688:1:36:0,-10.8512,-148.609	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:151:149,2:149:5316:2:72:0,-38.6188,-471.74	0/0:81:79,2:79:2827:2:72:0,-17.5467,-247.832	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/1:87:45,42:45:1598:42:1497:-108.833,0,-117.919	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:105:64,41:64:2292:41:1472:-101.168,0,-174.933	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.877	0/0:114:114,0:114:4092:0:0:0,-34.3174,-368.447	0/1:116:81,35:81:2904:35:1242:-77.1643,0,-226.676	0/1:62:39,23:39:1392:23:828:-56.1803,0,-106.915	0/0:123:123,0:123:4396:0:0:0,-37.0267,-395.811	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:115:57,58:57:2036:58:2075:-152.401,0,-148.894	0/1:52:37,15:37:1324:15:536:-32.9213,0,-103.809	0/0:194:193,1:193:6896:1:32:0,-55.2005,-617.503	0/0:109:108,0:108:3868:0:0:0,-32.5112,-347.869	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.719	0/1:89:49,40:49:1746:40:1436:-102.746,0,-130.631	0/1:184:98,86:98:3508:86:3096:-223.477,0,-260.541	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.579	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.608	0/1:84:44,40:44:1576:40:1424:-103.17,0,-116.845	0/1:89:25,64:25:896:64:2284:-179.03,0,-54.1687	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.349	0/0:132:132,0:132:4744:0:0:0,-39.736,-427.116
chr04	32402817	.	T	C	121205	PASS	AB=0.506355;ABP=4.22462;AC=141;AF=0.766304;AN=184;AO=5692;CIGAR=1X;DP=7416;DPB=7416;DPRA=0;EPP=12250.4;EPPR=3698.94;GTI=0;LEN=1;MEANALT=1.06522;MQM=59.9327;MQMR=59.9884;NS=92;NUMALT=1;ODDS=0.559609;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203269;QR=61352;RO=1718;RPL=5679;RPP=12250.4;RPPR=3698.94;RPR=13;RUN=1;SAF=0;SAP=12363;SAR=5692;SRF=0;SRP=3733.6;SRR=1718;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:93:0,93:0:0:93:3296:-296.858,-27.9958,0	1/1:69:0,69:0:0:69:2457:-221.383,-20.7711,0	1/1:115:0,115:0:0:115:4116:-370.625,-34.6185,0	0/1:56:22,34:22:792:34:1220:-93.2399,0,-54.748	0/1:73:29,44:29:1029:44:1554:-118.173,0,-70.946	0/1:70:30,40:30:1080:40:1421:-107.113,0,-76.4412	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:75:0,75:0:0:75:2681:-241.533,-22.5773,0	1/1:73:0,73:0:0:73:2582:-232.626,-21.9752,0	0/1:55:31,24:31:1116:24:860:-61.1652,0,-84.195	0/1:88:45,43:45:1620:43:1511:-109.789,0,-119.591	1/1:90:0,90:0:0:90:3224:-289.751,-27.0927,0	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	1/1:52:0,51:0:0:51:1824:-164.081,-15.3525,0	0/1:50:27,23:27:964:23:828:-59.7926,0,-72.0253	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:45:24,21:24:864:21:756:-54.8209,0,-64.5362	0/1:139:67,72:67:2377:72:2588:-191.325,0,-172.344	0/1:128:88,40:88:3133:40:1400:-87.7617,0,-243.664	0/1:77:56,21:56:1978:21:748:-44.466,0,-155.112	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	1/1:61:3,58:3:108:58:2076:-176.906,-8.28766,0	0/1:38:23,15:23:824:15:532:-36.7739,0,-63.0396	1/1:262:0,262:0:0:262:9378:-843.975,-78.8699,0	0/1:184:91,93:91:3253:93:3322:-243.808,0,-237.6	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:232:0,232:0:0:232:8288:-745.927,-69.839,0	0/1:121:66,54:66:2344:54:1940:-138.393,0,-174.734	0/1:93:32,61:32:1148:61:2173:-167.839,0,-75.634	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:235:124,111:124:4441:111:3968:-286.513,0,-329.114	0/1:106:61,45:61:2173:45:1616:-113.821,0,-163.926	1/1:62:0,62:0:0:62:2211:-199.253,-18.6639,0	.:.:.:.:.:.:.:.	1/1:98:0,97:0:0:97:3476:-312.692,-29.1999,0	1/1:50:0,50:0:0:50:1791:-161.472,-15.0515,0	0/1:117:71,46:71:2492:46:1640:-112.668,0,-189.307	0/1:100:48,52:48:1728:52:1864:-137.764,0,-125.702	0/1:69:35,34:35:1241:34:1220:-89.3357,0,-91.2214	1/1:71:0,71:0:0:71:2511:-226.232,-21.3731,0	1/1:77:0,76:0:0:76:2736:-246.122,-22.8783,0	0/1:155:69,86:69:2480:86:3076:-230.409,0,-176.793	0/1:67:30,37:30:1076:37:1305:-97.5804,0,-76.9838	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:56:33,23:33:1188:23:828:-57.9864,0,-90.3709	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:77:33,44:33:1188:44:1540:-115.693,0,-84.0493	0/1:37:9,28:9:324:28:989:-78.1839,0,-18.3677	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:71:1,70:1:36:70:2493:-221.023,-17.7749,0	1/1:27:0,27:0:0:27:956:-86.3544,-8.12781,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:54:25,29:25:900:29:1044:-78.0192,0,-65.0654	1/1:134:0,134:0:0:134:4787:-430.95,-40.338,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:158:1,156:1:36:156:5607:-501.151,-44.0233,0	0/1:141:66,75:66:2372:75:2650:-196.291,0,-171.292	1/1:49:1,48:1:32:48:1728:-152.606,-11.5512,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:157:2,154:2:72:154:5470:-485.589,-40.4838,0	1/1:83:2,81:2:72:81:2906:-254.938,-18.1488,0	1/1:35:0,35:0:0:35:1251:-112.895,-10.5361,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:91:45,46:45:1601:46:1652:-121.575,0,-116.984	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/1:105:41,64:41:1453:64:2296:-175.293,0,-99.4558	1/1:70:0,70:0:0:70:2455:-221.2,-21.0721,0	1/1:117:0,117:0:0:117:4157:-374.297,-35.2205,0	0/1:115:36,79:36:1277:79:2817:-219.15,0,-80.6127	0/1:62:23,39:23:824:39:1404:-107.995,0,-55.8195	1/1:123:0,123:0:0:123:4378:-394.193,-37.0267,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:117:59,58:59:2116:58:2076:-151.89,0,-155.488	0/1:52:15,37:15:521:37:1298:-101.465,0,-31.5628	1/1:194:0,194:0:0:194:6930:-623.76,-58.3998,0	1/1:109:0,109:0:0:109:3900:-351.108,-32.8123,0	1/1:76:0,76:0:0:76:2719:-244.867,-22.8783,0	0/1:92:41,51:41:1476:51:1832:-137.466,0,-105.441	0/1:185:87,98:87:3128:98:3501:-259.609,0,-226.055	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:92:0,92:0:0:92:3304:-297.388,-27.6948,0	1/1:66:0,66:0:0:66:2330:-209.957,-19.868,0	1/1:43:0,43:0:0:43:1529:-137.896,-12.9443,0	0/1:85:40,45:40:1436:45:1604:-119.063,0,-103.95	0/1:90:64,26:64:2251:26:924:-56.385,0,-175.756	1/1:66:0,66:0:0:66:2336:-210.068,-19.868,0	1/1:131:0,131:0:0:131:4693:-422.528,-39.4349,0
chr04	32414804	.	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chr04	32431968	.	G	A	25092.7	PASS	AB=0.473767;ABP=22.0364;AC=38;AF=0.202128;AN=188;AO=1535;CIGAR=1X;DP=8718;DPB=8718;DPRA=1.13386;EPP=3336.22;EPPR=15585.5;GTI=2;LEN=1;MEANALT=1.03922;MQM=59.456;MQMR=59.7191;NS=94;NUMALT=1;ODDS=3.89785;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54766;QR=256036;RO=7180;RPL=1533;RPP=3318.87;RPPR=15542.1;RPR=2;RUN=1;SAF=1533;SAP=3318.87;SAR=2;SRF=7175;SRP=15550.8;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.168	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.599	0/0:71:71,0:71:2507:0:0:0,-21.3731,-225.781	0/1:44:23,21:23:828:21:752:-54.7517,0,-61.5954	0/1:28:11,17:11:392:17:608:-46.6232,0,-27.185	0/1:40:22,18:22:779:18:648:-46.6107,0,-58.3909	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.144	0/0:77:77,0:77:2728:0:0:0,-23.1793,-245.615	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.377	0/1:177:156,21:156:5582:21:748:-14.3583,0,-449.212	0/1:63:26,37:26:916:37:1328:-100.849,0,-63.7043	0/0:67:67,0:67:2386:0:0:0,-20.169,-214.978	0/0:55:55,0:55:1927:0:0:0,-16.5566,-173.697	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.817	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8206	0/1:69:28,41:28:992:41:1464:-111.263,0,-68.7813	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:102:86,16:86:3039:16:557:-19.7472,0,-243.034	0/1:60:20,40:20:716:40:1430:-110.802,0,-46.7028	0/1:110:52,58:52:1856:58:2068:-153.249,0,-134.187	0/1:63:15,48:15:521:48:1724:-136.474,0,-28.2514	0/0:66:66,0:66:2337:0:0:0,-19.868,-210.506	0/1:48:40,8:40:1427:8:288:-11.818,0,-114.267	0/1:29:14,15:14:496:15:528:-39.106,0,-36.241	0/0:157:157,0:157:5628:0:0:0,-47.2617,-506.593	0/1:94:49,45:49:1760:45:1607:-116.622,0,-130.378	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1942	0/0:96:96,0:96:3407:0:0:0,-28.8989,-305.563	0/1:97:60,37:60:2139:37:1316:-89.5354,0,-163.555	0/1:63:23,40:23:805:40:1436:-110.57,0,-53.8026	0/0:197:197,0:197:7050:0:0:0,-59.3029,-634.542	0/0:114:112,2:112:4028:2:72:0,-27.4807,-355.844	0/0:104:103,1:103:3682:1:36:0,-27.7088,-327.953	0/0:169:165,4:165:5913:4:134:0,-38.5737,-519.84	0/0:172:172,0:172:6168:0:0:0,-51.7772,-555.136	0/1:215:91,123:91:3236:123:4380:-329.566,0,-226.68	0/1:121:45,76:45:1603:76:2728:-209.332,0,-108.133	0/0:300:300,0:300:10672:0:0:0,-90.309,-960.343	0/0:112:111,1:111:3964:1:36:0,-30.1171,-353.328	0/0:51:51,0:51:1797:0:0:0,-15.3525,-162.007	0/0:350:350,0:350:12536:0:0:0,-105.36,-1128.02	0/1:108:43,65:43:1522:65:2325:-176.954,0,-104.598	0/1:63:26,37:26:921:37:1328:-100.855,0,-64.2403	0/1:66:33,33:33:1180:33:1174:-86.0934,0,-86.6382	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:48:48,0:48:1710:0:0:0,-14.4494,-154.116	0/1:29:18,11:18:648:11:383:-26.0709,0,-49.922	0/1:70:33,37:33:1180:37:1321:-98.1108,0,-85.4344	0/0:52:52,0:52:1859:0:0:0,-15.6536,-166.799	0/1:126:61,65:61:2184:65:2315:-169.818,0,-158.896	0/0:103:100,3:100:3575:3:108:0,-20.9309,-311.871	0/1:85:27,58:27:963:58:2076:-161.487,0,-61.3984	0/1:21:6,15:6:212:15:540:-42.6149,0,-13.1028	0/0:186:182,4:182:6495:4:144:0,-42.678,-569.876	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.861	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:181:181,0:181:6457:0:0:0,-54.4864,-581.209	0/0:330:329,1:329:11703:1:32:0,-96.141,-1049.91	0/1:47:19,28:19:671:28:1004:-76.5044,0,-46.5674	0/0:165:165,0:165:5904:0:0:0,-49.6699,-531.144	0/0:190:187,3:187:6695:3:108:0,-47.1205,-592.534	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.866	0/1:124:45,79:45:1612:79:2828:-217.293,0,-108.038	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.347	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0514	0/0:74:73,0:73:2602:0:0:0,-21.9752,-234.056	0/0:69:67,1:67:2395:1:36:0,-17.2316,-212.207	0/0:190:190,0:190:6765:0:0:0,-57.1957,-608.881	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:76:36,40:36:1273:40:1440:-106.754,0,-91.9926	0/0:203:200,3:200:7138:3:104:0,-51.4087,-632.663	0/1:62:29,33:29:1035:33:1180:-87.6938,0,-74.7992	0/0:43:42,1:42:1504:1:36:0,-9.34601,-132.049	0/1:111:42,69:42:1512:69:2449:-187.224,0,-102.848	0/1:46:24,22:24:864:22:784:-57.0318,0,-63.3746	0/1:33:17,16:17:608:16:572:-41.8712,0,-45.118	0/0:36:35,1:35:1252:1:36:0,-7.2388,-108.631	0/0:158:156,2:156:5591:2:72:0,-40.726,-496.378	0/1:34:16,18:16:576:18:631:-46.8798,0,-41.94	0/1:46:23,23:23:824:23:805:-58.906,0,-60.6359	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.474	0/0:87:87,0:87:3097:0:0:0,-26.1896,-278.949	0/0:36:36,0:36:1278:0:0:0,-10.8371,-115.32	0/1:95:41,54:41:1453:54:1932:-145.486,0,-102.465	0/1:145:71,74:71:2509:74:2652:-195.215,0,-182.371	0/0:29:29,0:29:1016:0:0:0,-8.72987,-91.749	0/0:80:80,0:80:2835:0:0:0,-24.0824,-255.374	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.561	0/0:271:271,0:271:9593:0:0:0,-81.5791,-863.277	0/1:310:280,30:280:9949:30:1061:-2.44841,0,-801.885	0/1:63:23,40:23:828:40:1402:-107.507,0,-55.8777	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:86:86,0:86:3048:0:0:0,-25.8886,-274.531
chr04	32482038	.	TATCA	TATCG	152606	PASS	AB=0.487081;ABP=7.16218;AC=144;AF=0.782609;AN=184;AO=5725;CIGAR=4M1X;DP=7226;DPB=7227.6;DPRA=0;EPP=12426;EPPR=3182.05;GTI=0;LEN=1;MEANALT=1.29348;MQM=59.8208;MQMR=59.8495;NS=92;NUMALT=1;ODDS=3.8571;PAIRED=0;PAIREDR=0;PAO=4;PQA=138;PQR=0;PRO=0;QA=200406;QR=51663;RO=1468;RPL=3483;RPP=587.158;RPPR=82.627;RPR=2242;RUN=1;SAF=3484;SAP=589.042;SAR=2241;SRF=851;SRP=84.0056;SRR=617;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,14:0:0:14:470:-42.374,-4.21442,0	1/1:67:1,66:1:36:66:2336:-206.896,-16.5707,0	1/1:63:0,60:0:0:60:2089:-187.89,-18.0618,0	1/1:194:0,193:0:0:193:6783:-610.337,-58.0988,0	0/1:14:11,3:11:378:3:108:-5.86075,0,-30.1352	0/1:31:18,13:18:643:13:453:-31.7677,0,-48.8687	0/1:81:42,39:42:1495:39:1353:-97.4539,0,-110.46	1/1:107:0,104:0:0:104:3650:-328.309,-31.3071,0	1/1:46:0,42:0:0:42:1488:-133.855,-12.6433,0	1/1:90:0,90:0:0:90:3172:-285.704,-27.0927,0	0/1:78:34,44:34:1203:44:1511:-112.705,0,-85.0952	1/1:129:0,129:0:0:129:4475:-402.832,-38.8329,0	1/1:139:0,139:0:0:139:4792:-431.401,-41.8432,0	1/1:92:0,92:0:0:92:3238:-291.637,-27.6948,0	1/1:111:0,111:0:0:111:3842:-345.975,-33.4143,0	1/1:95:0,95:0:0:95:3243:-292.059,-28.5979,0	0/1:76:35,41:35:1245:41:1437:-106.67,0,-89.4183	1/1:58:0,58:0:0:58:2038:-183.691,-17.4597,0	0/1:49:20,29:20:709:29:998:-75.3778,0,-49.3857	0/1:82:47,35:47:1660:35:1252:-88.3006,0,-125.003	0/1:157:79,78:79:2717:78:2731:-198.77,0,-197.462	0/1:22:16,6:16:560:6:207:-12.3442,0,-44.1059	1/1:72:0,72:0:0:72:2502:-225.425,-21.6742,0	1/1:34:1,33:1:36:33:1164:-101.469,-6.63675,0	0/1:19:3,16:3:108:16:550:-44.1038,0,-4.3556	1/1:179:0,177:0:0:177:6277:-564.637,-53.2823,0	0/1:97:49,48:49:1723:48:1645:-119.13,0,-126.155	1/1:49:0,49:0:0:49:1713:-154.444,-14.7505,0	1/1:162:0,162:0:0:162:5657:-509.24,-48.7669,0	0/1:70:35,35:35:1244:35:1238:-90.6508,0,-91.1927	0/1:88:47,41:47:1651:41:1447:-104.035,0,-122.387	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:246:136,109:136:4788:109:3789:-267.048,0,-356.97	0/1:46:14,32:14:486:32:1117:-86.9818,0,-30.2211	1/1:63:0,62:0:0:62:2169:-195.112,-18.6639,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:83:0,83:0:0:83:2931:-264.019,-24.9855,0	1/1:42:0,42:0:0:42:1463:-131.023,-12.6433,0	0/1:59:32,27:32:1122:27:946:-67.6921,0,-83.5261	0/1:96:51,45:51:1801:45:1586:-114.057,0,-133.41	0/1:98:57,39:57:1975:39:1349:-92.4424,0,-148.766	1/1:41:0,41:0:0:41:1456:-131.276,-12.3422,0	1/1:27:0,27:0:0:27:931:-84.0988,-8.12781,0	0/1:72:33,38:33:1175:38:1327:-97.9872,0,-84.3233	0/1:50:15,35:15:539:35:1243:-97.12,0,-33.7947	1/1:137:0,136:0:0:136:4813:-432.963,-40.9401,0	0/1:28:18,10:18:637:10:351:-23.4969,0,-49.2295	1/1:12:1,11:1:36:11:392:-32.0218,-0.0140851,0	0/1:50:24,26:24:840:26:928:-68.7868,0,-60.8661	0/1:23:5,18:5:180:18:640:-51.0056,0,-9.62745	0/1:8:7,1:7:251:1:36:-1.19004,0,-20.5296	1/1:95:1,94:1:36:94:3291:-292.802,-24.9996,0	1/1:22:0,22:0:0:22:783:-70.7929,-6.62266,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:54:32,22:32:1129:22:788:-54.9892,0,-85.6565	1/1:108:0,107:0:0:107:3715:-334.303,-32.2102,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:300:1,297:1:35:297:10420:-934.234,-86.5282,0	0/1:71:43,28:43:1536:28:988:-67.8584,0,-117.16	1/1:70:1,69:1:35:69:2440:-216.355,-17.5735,0	1/1:47:0,47:0:0:47:1668:-150.407,-14.1484,0	1/1:125:0,125:0:0:125:4419:-397.869,-37.6288,0	1/1:86:0,85:0:0:85:2997:-269.598,-25.5876,0	1/1:63:0,63:0:0:63:2203:-198.529,-18.9649,0	1/1:33:0,33:0:0:33:1172:-105.779,-9.93399,0	0/1:85:46,38:46:1623:38:1312:-92.8473,0,-120.828	0/1:19:4,15:4:142:15:536:-42.8552,0,-7.4097	0/1:45:21,24:21:736:24:843:-62.6416,0,-53.016	1/1:96:0,96:0:0:96:3415:-307.537,-28.8989,0	0/1:167:82,85:82:2872:85:3001:-220.038,0,-208.423	0/1:128:63,64:63:2221:64:2252:-164.448,0,-161.671	0/1:45:23,22:23:814:22:788:-57.6984,0,-60.0351	1/1:177:2,174:2:72:174:6107:-542.648,-46.4548,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:65:28,37:28:987:37:1297:-97.4573,0,-69.5765	0/1:47:23,24:23:800:24:847:-62.3624,0,-58.1603	1/1:107:0,107:0:0:107:3776:-340.04,-32.2102,0	1/1:86:0,86:0:0:86:2967:-267.26,-25.8886,0	1/1:92:0,92:0:0:92:3192:-287.5,-27.6948,0	0/1:97:47,49:47:1670:49:1695:-123.515,0,-121.268	0/1:185:98,86:98:3435:86:2955:-210.373,0,-253.561	1/1:42:0,42:0:0:42:1468:-132.297,-12.6433,0	1/1:104:0,104:0:0:104:3546:-319.345,-31.3071,0	1/1:93:0,93:0:0:93:3193:-287.573,-27.9958,0	1/1:71:0,71:0:0:71:2499:-225.152,-21.3731,0	0/1:80:29,51:29:990:51:1750:-133.695,0,-65.3245	0/1:119:85,33:85:3004:33:1150:-67.9225,0,-234.683	1/1:238:0,237:0:0:237:8312:-747.689,-71.3441,0	1/1:177:0,175:0:0:175:6151:-553.308,-52.6803,0
chr04	32508165	.	A	G	77762.4	PASS	AB=0.463506;ABP=55.4709;AC=143;AF=0.768817;AN=186;AO=6317;CIGAR=1X;DP=8770;DPB=8770;DPRA=19.0543;EPP=13720.2;EPPR=5320.95;GTI=4;LEN=1;MEANALT=1.03261;MQM=27.3986;MQMR=35.3695;NS=93;NUMALT=1;ODDS=0.464056;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214806;QR=87056;RO=2449;RPL=0;RPP=13720.2;RPPR=5320.95;RPR=6317;RUN=1;SAF=0;SAP=13720.2;SAR=6317;SRF=0;SRP=5320.95;SRR=2449;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:836:-58.3937,-7.22472,0	1/1:55:3,52:3:108:52:1750:-116.058,-7.81046,0	1/1:128:0,128:0:0:128:4324:-307.629,-38.5318,0	1/1:201:0,201:0:0:201:6830:-468.378,-60.507,0	0/1:73:47,26:47:1662:26:862:-39.9165,0,-109.821	0/1:58:27,31:27:959:31:1054:-57.6833,0,-56.9306	0/1:167:86,81:86:3072:81:2731:-138.1,0,-205.03	1/1:157:0,157:0:0:157:5356:-378.764,-47.2617,0	1/1:67:0,67:0:0:67:2291:-162.018,-20.169,0	1/1:104:0,104:0:0:104:3591:-245.448,-31.3071,0	0/1:29:15,14:15:532:14:496:-24.7845,0,-34.8668	1/1:34:0,34:0:0:34:1134:-81.1413,-10.235,0	1/1:43:0,43:0:0:43:1492:-104.67,-12.9443,0	1/1:82:0,82:0:0:82:2805:-197.717,-24.6845,0	1/1:32:0,32:0:0:32:1094:-75.5253,-9.63296,0	1/1:41:0,41:0:0:41:1455:-100.757,-12.3422,0	0/1:36:21,15:21:748:15:523:-25.9647,0,-47.7112	1/1:26:0,26:0:0:26:879:-62.2755,-7.82678,0	0/1:14:4,10:4:144:10:336:-19.7711,0,-7.21087	0/1:279:169,110:169:6012:110:3724:-172.155,0,-415.296	0/1:149:79,70:79:2806:70:2377:-123.459,0,-182.611	0/1:182:116,66:116:4106:66:2277:-100.591,0,-294.389	1/1:188:0,188:0:0:188:6497:-442.049,-56.5936,0	1/1:119:3,116:3:108:116:3874:-267.234,-26.7333,0	0/1:82:52,30:52:1860:30:1009:-47.4059,0,-125.394	1/1:291:0,290:0:0:290:9814:-674.637,-87.2987,0	0/1:241:123,118:123:4348:118:4032:-212.568,0,-277.7	1/1:16:0,16:0:0:16:551:-39.1168,-4.81648,0	1/1:317:0,317:0:0:317:10654:-736.579,-95.4265,0	0/1:125:76,49:76:2705:49:1681:-80.9516,0,-178.583	0/1:168:97,71:97:3426:71:2429:-115.406,0,-234.51	1/1:5:0,5:0:0:5:176:-12.5115,-1.50515,0	0/1:8:3,5:3:108:5:171:-9.91175,0,-6.681	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.3687	0/1:5:1,4:1:36:4:127:-8.19995,0,-1.61849	1/1:2:0,2:0:0:2:68:-5.12131,-0.60206,0	0/1:85:36,49:36:1271:49:1684:-88.6755,0,-83.6389	0/1:182:83,99:83:2939:99:3343:-183.67,0,-183.439	1/1:9:0,9:0:0:9:307:-22.0243,-2.70927,0	.:.:.:.:.:.:.:.	1/1:142:2,140:2:72:140:4759:-331.256,-36.5786,0	1/1:20:0,20:0:0:20:688:-48.0548,-6.0206,0	0/1:203:117,86:117:4170:86:2915:-146.295,0,-268.023	0/1:25:13,12:13:468:12:404:-20.3689,0,-31.1607	0/1:31:17,14:17:603:14:455:-23.0221,0,-40.7795	1/1:120:1,119:1:36:119:4031:-273.399,-32.7,0	1/1:109:0,109:0:0:109:3669:-260.94,-32.8123,0	0/1:197:115,82:115:4099:82:2799:-132.609,0,-282.281	0/1:140:82,58:82:2931:58:2031:-95.0589,0,-200.359	1/1:165:0,165:0:0:165:5624:-385.798,-49.67,0	0/1:248:121,127:121:4325:127:4352:-222.51,0,-294.517	0/1:7:6,1:6:216:1:36:-0.54139,0,-16.2966	0/1:170:94,76:94:3359:76:2566:-131.083,0,-209.614	0/1:105:55,50:55:1960:50:1742:-85.6789,0,-134.691	0/1:4:2,2:2:72:2:72:-3.99466,0,-4.73079	1/1:149:0,149:0:0:149:5078:-359.053,-44.8535,0	1/1:79:0,79:0:0:79:2667:-184.348,-23.7814,0	1/1:1:0,1:0:0:1:32:-2.58088,-0.30103,0	1/1:19:0,19:0:0:19:653:-44.6534,-5.71957,0	0/1:134:53,81:53:1899:81:2675:-151.583,0,-110.445	1/1:94:0,93:0:0:93:3151:-216.242,-27.9958,0	1/1:1:0,1:0:0:1:27:-2.3994,-0.30103,0	1/1:215:0,215:0:0:215:7383:-503.854,-64.7215,0	0/1:165:94,71:94:3344:71:2408:-116.177,0,-228.273	1/1:102:1,101:1:36:101:3419:-237.712,-27.4589,0	1/1:91:0,91:0:0:91:3094:-212.489,-27.3937,0	1/1:142:1,141:1:36:141:4776:-325.14,-39.4001,0	1/1:47:1,46:1:36:46:1554:-104.533,-11.6815,0	1/1:13:0,13:0:0:13:412:-30.1781,-3.91339,0	1/1:62:0,62:0:0:62:2130:-150.423,-18.6639,0	0/1:43:19,24:19:671:24:838:-43.793,0,-44.2397	0/1:37:23,14:23:820:14:461:-21.6547,0,-56.5688	0/1:145:78,67:78:2766:67:2284:-118.257,0,-172.18	1/1:34:0,34:0:0:34:1195:-82.5922,-10.235,0	0/1:232:119,111:119:4211:111:3710:-195.781,0,-268.69	0/1:166:73,93:73:2592:93:3182:-167.62,0,-166.275	0/1:156:95,61:95:3364:61:2097:-100.185,0,-215.687	1/1:104:0,104:0:0:104:3561:-250.929,-31.3071,0	1/1:1:0,1:0:0:1:32:-2.65466,-0.30103,0	0/1:115:70,45:70:2512:45:1512:-73.0907,0,-169.503	0/1:171:71,100:71:2521:100:3426:-190.276,0,-144.755	1/1:234:1,233:1:36:233:7965:-541.968,-67.0949,0	1/1:45:0,45:0:0:45:1556:-106.364,-13.5464,0	1/1:34:0,34:0:0:34:1173:-80.1259,-10.235,0	0/1:41:18,23:18:631:23:803:-42.0688,0,-39.8656	0/1:71:34,37:34:1191:37:1224:-64.1177,0,-77.2069	1/1:22:0,22:0:0:22:764:-53.4682,-6.62266,0	1/1:41:0,41:0:0:41:1380:-98.2123,-12.3422,0	1/1:36:0,36:0:0:36:1208:-85.2807,-10.8371,0	1/1:41:0,41:0:0:41:1310:-96.2157,-12.3422,0	0/1:31:14,17:14:485:17:553:-30.9607,0,-30.6375	0/1:15:13,2:13:464:2:72:-0.51689,0,-34.7282	1/1:86:0,86:0:0:86:2898:-199.028,-25.8886,0	1/1:40:0,40:0:0:40:1366:-93.9475,-12.0412,0
chr04	32527478	.	GAGGAACT	AAGAAACT,GAGAAACT	128567	PASS	AB=0.526906,0.461136;ABP=19.8368,38.1174;AC=143,45;AF=0.760638,0.239362;AN=188;AO=4685,1265;CIGAR=1X2M1X4M,3M1X4M;DP=6020;DPB=6020;DPRA=64.7204,0.969895;EPP=10003.4,2663.75;EPPR=5.18177;GTI=1;LEN=8,1;MEANALT=2.13978,2.61702;MQM=59.9799,59.9992;MQMR=60;NS=94;NUMALT=2;ODDS=0.296513;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165322,45340;QR=36;RO=1;RPL=4665,1255;RPP=10003.4,2663.75;RPPR=5.18177;RPR=20,10;RUN=1,1;SAF=0,0;SAP=10176.4,2749.92;SAR=4685,1265;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,39,0:0:0:39,0:1378,0:-123.997,-11.7402,0,-123.997,-11.7402,-123.997	1/1:42:0,41,0:0:0:41,0:1458,0:-131.155,-12.3422,0,-131.155,-12.3422,-131.155	1/1:66:0,64,0:0:0:64,0:2255,0:-202.882,-19.2659,0,-202.882,-19.2659,-202.882	1/1:104:0,102,0:0:0:102,0:3569,0:-321.103,-30.7051,0,-321.103,-30.7051,-321.103	2/2:26:0,2,24:0:0:2,24:71,851:-76.5546,-70.7695,-70.1674,-7.22472,-1.08472,0	1/2:30:0,25,5:0:0:25,5:892,180:-87.7618,-15.0469,-7.52116,-73.0742,0,-71.5691	1/2:69:0,34,35:0:0:34,35:1185,1260:-199.495,-103.169,-92.9344,-96.6797,0,-86.1437	1/1:109:0,108,0:0:0:108,0:3847,0:-346.198,-32.5112,0,-346.198,-32.5112,-346.198	1/1:99:0,98,0:0:0:98,0:3471,0:-312.32,-29.5009,0,-312.32,-29.5009,-312.32	1/1:84:0,82,1:0:0:82,1:2896,36:-260.557,-24.6845,0,-257.619,-21.7071,-257.318	1/2:39:0,22,15:0:0:22,15:785,540:-108.073,-44.0789,-37.4562,-64.01,0,-59.4946	1/1:93:0,92,0:0:0:92,0:3274,0:-294.521,-27.6948,0,-294.521,-27.6948,-294.521	1/1:82:0,82,0:0:0:82,0:2898,0:-261.057,-24.6845,0,-261.057,-24.6845,-261.057	1/1:57:0,57,0:0:0:57,0:2029,0:-182.882,-17.1587,0,-182.882,-17.1587,-182.882	1/1:58:0,58,0:0:0:58,0:2074,0:-186.93,-17.4597,0,-186.93,-17.4597,-186.93	1/1:58:0,54,2:0:0:54,2:1903,72:-171.187,-16.2556,0,-165.311,-10.3808,-164.709	1/2:39:0,18,21:0:0:18,21:638,748:-113.299,-61.3237,-55.9051,-52.3301,0,-46.0084	1/1:50:0,49,0:0:0:49,0:1732,0:-155.804,-14.7505,0,-155.804,-14.7505,-155.804	1/2:45:0,30,14:0:0:30,14:1069,491:-127.143,-40.0033,-30.9724,-87.1883,0,-82.9739	1/2:103:0,42,61:0:0:42,61:1471,2188:-298.509,-178.823,-166.18,-120.04,0,-101.677	1/2:91:0,51,39:0:0:51,39:1795,1388:-259.351,-113.226,-97.8736,-146.225,0,-134.485	1/2:69:0,19,50:0:0:19,50:663,1792:-200.433,-146.511,-140.791,-54.2737,0,-39.2222	1/1:44:0,44,0:0:0:44,0:1548,0:-139.61,-13.2453,0,-139.61,-13.2453,-139.61	1/1:32:0,32,0:0:0:32,0:1118,0:-100.926,-9.63296,0,-100.926,-9.63296,-100.926	1/2:29:0,23,6:0:0:23,6:816,216:-84.4633,-17.9843,-11.0606,-66.8377,0,-65.0315	1/1:162:0,161,0:0:0:161,0:5682,0:-511.278,-48.4658,0,-511.278,-48.4658,-511.278	1/2:136:0,90,45:0:0:90,45:3166,1611:-389.247,-131.53,-104.437,-257.869,0,-244.323	1/1:38:0,38,0:0:0:38,0:1357,0:-122.431,-11.4391,0,-122.431,-11.4391,-122.431	1/1:146:0,145,0:0:0:145,0:5121,0:-460.678,-43.6494,0,-460.678,-43.6494,-460.678	1/2:66:0,35,29:0:0:35,29:1220,1035:-183.587,-84.3736,-73.8375,-99.207,0,-90.4771	1/2:46:0,26,18:0:0:26,18:916,644:-127.172,-52.5933,-44.7666,-74.6531,0,-69.2346	1/2:9:0,1,8:0:0:1,8:36,288:-26.7966,-23.8592,-23.5581,-3.29724,0,-0.889005	1/2:13:0,7,2:0:0:7,2:252,72:-26.4385,-5.87567,-3.76846,-20.5635,0,-19.9614	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:29:0,29,0:0:0:29,0:1029,0:-92.9231,-8.72987,0,-92.9231,-8.72987,-92.9231	1/2:175:0,99,75:0:0:99,75:3512,2688:-505.499,-219.366,-189.564,-286.268,0,-263.691	1/2:95:0,32,63:0:0:32,63:1137,2259:-277.257,-184.607,-174.974,-93.0062,0,-74.0413	1/1:54:0,54,0:0:0:54,0:1920,0:-173.077,-16.2556,0,-173.077,-16.2556,-173.077	1/1:4:0,4,0:0:0:4,0:138,0:-12.7598,-1.20412,0,-12.7598,-1.20412,-12.7598	1/1:73:0,70,2:0:0:70,2:2460,72:-221.294,-21.0721,0,-215.419,-15.1973,-214.817	1/1:56:0,56,0:0:0:56,0:1999,0:-180.184,-16.8577,0,-180.184,-16.8577,-180.184	1/2:62:0,38,23:0:0:38,23:1343,816:-175.934,-66.5549,-55.1158,-109.449,0,-102.525	1/2:47:0,27,20:0:0:27,20:951,705:-135.172,-57.7522,-49.6244,-77.7722,0,-71.7516	1/2:50:0,23,26:0:0:23,26:814,936:-142.674,-76.3729,-69.4492,-66.298,0,-58.4712	1/1:51:0,51,0:0:0:51,0:1818,0:-163.901,-15.3525,0,-163.901,-15.3525,-163.901	1/1:84:0,83,0:0:0:83,0:2928,0:-263.483,-24.9855,0,-263.483,-24.9855,-263.483	1/2:96:1,50,43:1:36:50,43:1756,1548:-266.03,-123.415,-111.301,-140.017,0,-130.01	1/2:80:0,34,44:0:0:34,44:1193,1567:-224.801,-127.716,-117.481,-97.0789,0,-83.8335	1/1:79:0,78,0:0:0:78,0:2741,0:-246.693,-23.4803,0,-246.693,-23.4803,-246.693	1/2:133:0,42,89:0:0:42,89:1479,3191:-380.671,-260.266,-247.623,-120.405,0,-93.6129	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:107:0,57,49:0:0:57,49:2019,1764:-308.509,-144.041,-126.882,-164.572,0,-149.821	1/2:38:0,21,17:0:0:21,17:753,612:-111.712,-50.2959,-43.9743,-61.7751,0,-56.6576	1/2:6:0,3,3:0:0:3,3:106,108:-17.8016,-9.17208,-8.26899,-8.98601,0,-8.08292	1/1:53:0,52,0:0:0:52,0:1811,0:-162.939,-15.6536,0,-162.939,-15.6536,-162.939	1/1:16:0,16,0:0:0:16,0:564,0:-51.0895,-4.81648,0,-51.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chr04	32553184	.	G	T	94048.1	PASS	AB=0.459526;ABP=49.2395;AC=141;AF=0.758065;AN=186;AO=4536;CIGAR=1X;DP=6316;DPB=6316;DPRA=11.4312;EPP=9852.81;EPPR=3861.72;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.9656;MQMR=59.9989;NS=93;NUMALT=1;ODDS=0.282633;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161939;QR=63688;RO=1777;RPL=4536;RPP=9852.81;RPPR=3861.72;RPR=0;RUN=1;SAF=0;SAP=9852.81;SAR=4536;SRF=0;SRP=3861.72;SRR=1777;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1673:-150.854,-14.1484,0	1/1:73:1,72:1:36:72:2565:-227.5,-18.3769,0	1/1:99:0,99:0:0:99:3492:-314.488,-29.802,0	1/1:142:0,142:0:0:142:5062:-455.702,-42.7463,0	0/1:70:23,47:23:824:47:1692:-131.495,0,-53.4112	0/1:35:20,15:20:720:15:536:-38.0388,0,-54.5927	0/1:88:44,44:44:1580:44:1580:-115.996,0,-116.001	1/1:97:0,97:0:0:97:3465:-311.903,-29.1999,0	1/1:93:0,93:0:0:93:3328:-299.738,-27.9958,0	1/1:68:0,68:0:0:68:2429:-218.864,-20.47,0	0/1:41:20,21:20:720:21:748:-55.3027,0,-52.7865	1/1:67:0,67:0:0:67:2412:-217.335,-20.169,0	1/1:56:0,56:0:0:56:2012:-181.352,-16.8577,0	1/1:36:0,36:0:0:36:1288:-116.223,-10.8371,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:46:0,46:0:0:46:1656:-149.327,-13.8474,0	0/1:22:13,9:13:468:9:324:-22.8828,0,-35.837	1/1:27:0,27:0:0:27:972:-87.7975,-8.12781,0	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/1:132:79,53:79:2824:53:1885:-130.191,0,-214.663	0/1:80:41,39:41:1476:39:1385:-100.864,0,-109.054	0/1:62:44,18:44:1580:18:629:-38.2699,0,-123.828	1/1:43:0,43:0:0:43:1533:-138.256,-12.9443,0	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	0/1:93:56,37:56:2000:37:1328:-91.8264,0,-152.278	1/1:139:0,139:0:0:139:4955:-446.091,-41.8432,0	0/1:167:90,77:90:3228:77:2772:-199.448,0,-240.47	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:132:0,132:0:0:132:4729:-425.765,-39.736,0	0/1:98:57,41:57:2040:41:1442:-100.571,0,-154.371	0/1:74:36,38:36:1296:38:1364:-100.784,0,-94.6677	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:143:60,83:60:2148:83:2954:-223.043,0,-150.54	0/1:108:55,53:55:1972:53:1904:-139.126,0,-145.244	1/1:24:0,24:0:0:24:849:-76.7266,-7.22472,0	.:.:.:.:.:.:.:.	1/1:178:6,172:6:216:172:6154:-534.165,-33.7928,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:110:66,44:66:2353:44:1559:-107.485,0,-178.914	0/1:40:17,23:17:612:23:828:-62.8029,0,-43.3722	0/1:48:27,21:27:964:21:741:-52.5617,0,-72.6274	1/1:81:0,79:0:0:79:2829:-254.482,-23.7814,0	1/1:71:0,71:0:0:71:2526:-227.588,-21.3731,0	0/1:117:62,55:62:2224:55:1964:-141.815,0,-165.204	0/1:107:50,57:50:1784:57:2011:-149.048,0,-128.633	1/1:84:2,82:2:72:82:2929:-257.006,-18.4498,0	0/1:145:85,60:85:3048:60:2141:-149.307,0,-230.9	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:240:124,115:124:4432:115:4104:-297.238,0,-326.746	0/1:54:30,24:30:1080:24:858:-61.2856,0,-81.2576	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:94:1,93:1:36:93:3328:-296.137,-24.6985,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:83:40,43:40:1436:43:1544:-114.267,0,-104.552	1/1:61:0,61:0:0:61:2181:-196.553,-18.3628,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:112:1,111:1:36:111:3965:-353.439,-30.1171,0	0/1:140:70,70:70:2512:70:2500:-183.107,0,-184.188	1/1:57:5,52:5:180:52:1838:-149.144,-0.606645,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:100:0,100:0:0:100:3581:-322.494,-30.103,0	1/1:127:0,127:0:0:127:4548:-409.482,-38.2308,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:41:0,41:0:0:41:1476:-133.135,-12.3422,0	0/1:23:16,7:16:576:7:237:-14.7354,0,-45.2513	0/1:22:9,13:9:316:13:468:-35.837,0,-22.1562	0/1:130:71,59:71:2532:59:2112:-151.215,0,-188.998	1/1:62:0,62:0:0:62:2205:-198.714,-18.6639,0	0/1:126:73,53:73:2616:53:1885:-131.996,0,-197.758	0/1:97:56,41:56:2016:41:1457:-102.224,0,-152.513	0/1:89:60,29:60:2148:29:1028:-66.0414,0,-166.796	1/1:53:0,53:0:0:53:1866:-168.215,-15.9546,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:97:48,49:48:1724:49:1761:-129.574,0,-126.245	0/1:79:44,35:44:1572:35:1260:-89.9233,0,-117.99	1/1:137:0,137:0:0:137:4852:-436.83,-41.2411,0	1/1:40:0,40:0:0:40:1425:-128.545,-12.0412,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:18:6,12:6:216:12:417:-32.4417,0,-14.372	0/1:86:44,42:44:1584:42:1504:-109.764,0,-116.963	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:38:0,38:0:0:38:1353:-122.068,-11.4391,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:26:15,11:15:540:11:396:-28.1556,0,-41.1098	0/1:58:33,25:33:1179:25:900:-63.8597,0,-88.9575	0/1:38:28,10:28:1008:10:360:-21.3048,0,-79.5972	1/1:87:0,87:0:0:87:3079:-277.335,-26.1896,0	1/1:83:0,83:0:0:83:2969:-267.44,-24.9855,0
chr04	32564831	.	A	G	81303.4	PASS	AB=0.396965;ABP=1230.44;AC=94;AF=0.5;AN=188;AO=5284;CIGAR=1X;DP=13311;DPB=13311;DPRA=0;EPP=11286.8;EPPR=16952.5;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9913;MQMR=59.9833;NS=94;NUMALT=1;ODDS=88.7604;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188574;QR=287465;RO=8024;RPL=21;RPP=11295.4;RPPR=16952.5;RPR=5263;RUN=1;SAF=5283;SAP=11468.4;SAR=1;SRF=8024;SRP=17426.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:25,8:25:900:8:284:-15.9694,0,-71.387	0/1:250:141,109:141:5068:109:3904:-276.296,0,-381.005	0/1:102:69,32:69:2468:32:1140:-72.1457,0,-191.587	0/1:265:172,93:172:6172:93:3309:-218.256,0,-475.803	0/1:63:45,18:45:1620:18:644:-39.3257,0,-127.125	0/1:63:49,14:49:1748:14:500:-26.3713,0,-138.639	0/1:113:84,29:84:3016:29:1036:-59.5375,0,-237.654	0/1:102:69,33:69:2476:33:1176:-75.4427,0,-192.16	0/1:88:62,26:62:2216:26:927:-57.2576,0,-173.214	0/1:115:95,20:95:3404:20:712:-29.7882,0,-271.956	0/1:120:79,41:79:2817:41:1447:-94.4015,0,-217.644	0/1:106:72,34:72:2584:34:1220:-78.1976,0,-200.9	0/1:144:65,79:65:2332:79:2803:-209.161,0,-166.791	0/1:258:141,116:141:5048:116:4125:-293.711,0,-376.741	0/1:118:57,61:57:2048:61:2178:-160.765,0,-149.07	0/1:121:53,68:53:1896:68:2440:-183.43,0,-134.493	0/1:151:91,60:91:3256:60:2132:-146.69,0,-247.805	0/1:117:60,57:60:2137:57:2035:-148.202,0,-157.376	0/1:70:48,22:48:1716:22:781:-49.54,0,-133.654	0/1:148:100,48:100:3588:48:1716:-110.173,0,-278.574	0/1:111:81,30:81:2908:30:1076:-63.7385,0,-228.541	0/1:55:47,8:47:1684:8:288:-9.71076,0,-135.29	0/1:66:50,16:50:1796:16:565:-31.3116,0,-142.054	0/1:127:85,42:85:3048:42:1500:-97.0638,0,-236.232	0/1:67:44,23:44:1568:23:812:-53.2319,0,-121.243	0/1:542:277,265:277:9892:265:9458:-688.025,0,-727.059	0/1:322:181,141:181:6480:141:5034:-356.276,0,-486.335	0/1:74:56,18:56:2012:18:648:-36.3757,0,-159.077	0/1:185:143,42:143:5113:42:1501:-79.6941,0,-404.621	0/1:226:163,63:163:5809:63:2263:-135.9,0,-454.892	0/1:203:122,81:122:4365:81:2877:-198.057,0,-331.913	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:452:247,205:247:8852:205:7339:-524.492,0,-660.599	0/1:295:228,67:228:8183:67:2387:-126.283,0,-647.676	0/1:184:81,103:81:2912:103:3645:-272.862,0,-206.925	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:215:155,60:155:5545:60:2144:-128.506,0,-434.452	0/1:66:39,26:39:1396:26:924:-63.6376,0,-106.1	0/1:75:48,27:48:1720:27:972:-65.2207,0,-132.508	0/1:154:93,61:93:3332:61:2175:-149.657,0,-253.739	0/1:106:53,53:53:1900:53:1903:-139.639,0,-139.369	0/1:113:66,47:66:2352:47:1658:-115.489,0,-177.923	0/1:267:135,132:135:4820:132:4721:-344.626,0,-353.582	0/1:198:155,43:155:5552:43:1548:-80.0091,0,-440.2	0/1:163:88,75:88:3156:75:2696:-193.816,0,-235.197	0/1:258:138,120:138:4964:120:4296:-309.15,0,-369.24	0/1:203:106,97:106:3808:97:3442:-248.885,0,-281.807	0/1:10:8,2:8:288:2:68:-3.44741,0,-23.2571	0/1:161:118,43:118:4232:43:1536:-90.0673,0,-332.593	0/1:64:34,30:34:1224:30:1072:-77.5265,0,-91.2011	0/1:21:18,3:18:640:3:108:-3.75354,0,-51.6077	0/1:253:159,94:159:5712:94:3344:-225.016,0,-438.034	0/1:29:20,9:20:712:9:324:-20.776,0,-55.6768	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/1:19:12,7:12:428:7:248:-16.9446,0,-33.1392	0/1:74:55,19:55:1968:19:675:-38.8007,0,-155.119	0/1:179:127,52:127:4541:52:1856:-113.435,0,-354.971	0/1:7:1,6:1:36:6:216:-17.677,0,-1.49106	0/1:266:179,87:179:6420:87:3110:-200.052,0,-497.812	0/1:351:188,163:188:6756:163:5804:-416.812,0,-502.449	0/1:164:87,77:87:3116:77:2760:-199.273,0,-231.298	0/1:111:57,54:57:2048:54:1900:-137.861,0,-151.177	0/1:209:123,86:123:4350:86:3040:-210.916,0,-328.761	0/1:141:69,72:69:2476:72:2584:-190.364,0,-180.648	0/1:86:42,44:42:1508:44:1572:-115.883,0,-110.126	0/1:124:69,55:69:2449:55:1957:-139.077,0,-183.336	0/1:210:97,113:97:3488:113:4055:-301.919,0,-250.913	0/1:39:20,19:20:716:19:676:-49.4278,0,-53.0275	0/1:95:64,31:64:2296:31:1108:-71.4331,0,-178.303	0/1:144:73,71:73:2624:71:2523:-183.974,0,-193.059	0/1:269:141,128:141:5060:128:4570:-330.489,0,-374.566	0/1:252:137,115:137:4916:115:4103:-293.596,0,-366.73	0/1:179:98,81:98:3504:81:2884:-205.911,0,-261.686	0/1:207:107,100:107:3840:100:3583:-260.363,0,-283.482	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/1:154:100,54:100:3600:54:1936:-128.158,0,-277.846	0/1:175:108,67:108:3872:67:2396:-163.217,0,-295.994	0/1:141:107,34:107:3840:34:1212:-66.9411,0,-303.264	0/1:233:102,131:102:3641:131:4679:-351.132,0,-257.754	0/1:152:69,83:69:2472:83:2977:-222.405,0,-176.977	0/1:143:89,54:89:3192:54:1928:-130.749,0,-244.456	0/1:256:169,87:169:6056:87:3090:-201.265,0,-468.079	0/1:82:41,41:41:1472:41:1464:-107.372,0,-108.092	0/1:131:88,43:88:3147:43:1544:-99.8181,0,-244.015	0/1:125:89,36:89:3176:36:1275:-77.4235,0,-247.946	0/1:89:61,28:61:2176:28:1008:-64.2447,0,-169.315	0/1:173:135,38:135:4856:38:1364:-70.9825,0,-385.113	0/1:95:66,29:66:2360:29:1036:-64.9561,0,-184.061	0/1:143:89,54:89:3200:54:1910:-129.127,0,-245.175	0/1:214:108,106:108:3880:106:3802:-277.956,0,-284.973
chr04	32564834	.	G	A	106419	PASS	AB=0.459129;ABP=196.661;AC=94;AF=0.5;AN=188;AO=6140;CIGAR=1X;DP=13371;DPB=13371;DPRA=0;EPP=12355.7;EPPR=14715.2;GTI=2;LEN=1;MEANALT=1.07447;MQM=59.9866;MQMR=59.9924;NS=94;NUMALT=1;ODDS=105.572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220012;QR=258235;RO=7224;RPL=115;RPP=12355.7;RPPR=14723.6;RPR=6025;RUN=1;SAF=6140;SAP=13335.9;SAR=0;SRF=7223;SRP=15681;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:8,26:8:288:26:932:-73.9638,0,-16.0324	0/1:254:110,144:110:3944:144:5168:-388.797,0,-278.69	0/1:103:32,71:32:1148:71:2525:-196.485,0,-72.6237	0/1:261:92,169:92:3278:169:6056:-466.571,0,-216.668	0/1:62:39,23:39:1392:23:824:-55.8195,0,-106.915	0/1:60:45,15:45:1593:15:540:-30.8747,0,-125.596	0/1:117:66,51:66:2325:51:1836:-130.3,0,-174.287	0/1:102:33,69:33:1179:69:2447:-189.708,0,-75.7122	0/1:87:25,62:25:900:62:2224:-174.235,0,-55.1314	0/1:116:19,97:19:680:97:3465:-277.141,0,-26.6097	0/1:119:73,46:73:2615:46:1641:-112.154,0,-199.774	0/1:107:34,73:34:1216:73:2609:-202.847,0,-77.5364	0/1:148:80,68:80:2857:68:2429:-174.311,0,-212.814	0/1:259:116,143:116:4159:143:5122:-383.154,0,-296.525	0/1:121:62,59:62:2220:59:2116:-154.284,0,-163.64	0/1:121:68,52:68:2425:52:1861:-131.285,0,-182.021	0/1:153:108,45:108:3842:45:1612:-99.3125,0,-299.917	0/1:117:58,59:58:2084:59:2120:-155.848,0,-152.61	0/1:72:57,15:57:2040:15:540:-27.2624,0,-162.198	0/1:149:104,45:104:3728:45:1616:-100.877,0,-290.867	0/1:114:82,32:82:2940:32:1140:-68.5918,0,-230.516	0/1:54:34,20:34:1197:20:716:-48.5121,0,-91.7778	0/1:67:16,51:16:572:51:1817:-143.64,0,-31.6444	0/1:127:43,84:43:1544:84:2997:-231.716,0,-101.022	0/1:67:49,18:49:1741:18:644:-38.1216,0,-136.803	0/1:548:263,285:263:9391:285:10210:-753.86,0,-680.191	0/1:327:234,93:234:8306:93:3325:-201.03,0,-649.118	0/1:74:17,57:17:612:57:2044:-161.956,0,-33.1372	0/1:184:43,141:43:1544:141:5046:-398.894,0,-83.8636	0/1:224:130,94:130:4661:94:3366:-235.725,0,-352.218	0/1:198:130,68:130:4620:68:2444:-160.611,0,-356.315	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:9:4,4:4:144:4:140:-10.1785,0,-10.5455	0/1:14:9,5:9:324:5:169:-11.3271,0,-25.2914	0/1:448:316,132:316:11351:132:4739:-291.805,0,-886.602	0/1:296:181,115:181:6484:115:4128:-282.598,0,-494.54	0/1:186:103,83:103:3676:83:2980:-212.44,0,-275.05	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:219:65,154:65:2309:154:5540:-432.796,0,-142.144	0/1:66:25,41:25:896:41:1463:-112.097,0,-61.0924	0/1:75:49,26:49:1748:26:932:-61.6216,0,-135.027	0/1:157:102,55:102:3636:55:1976:-130.853,0,-280.182	0/1:111:84,27:84:2999:27:968:-54.023,0,-236.727	0/1:113:47,66:47:1692:66:2364:-179.002,0,-118.55	0/1:263:128,135:128:4592:135:4836:-356.223,0,-333.646	0/1:195:112,83:112:4001:83:2982:-209.911,0,-301.578	0/1:163:116,47:116:4141:47:1684:-102.779,0,-323.805	0/1:259:116,142:116:4168:142:5078:-379.206,0,-297.345	0/1:202:169,33:169:6049:33:1188:-46.4205,0,-483.703	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/1:161:106,55:106:3800:55:1976:-129.649,0,-293.732	0/1:61:37,24:37:1313:24:860:-59.359,0,-100.107	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/1:254:91,163:91:3272:163:5852:-450.328,0,-218.237	0/1:29:9,20:9:324:20:720:-56.3989,0,-20.776	1/1:12:1,11:1:36:11:392:-32.0218,-0.0140851,0	0/1:21:7,14:7:248:14:504:-39.3765,0,-16.3426	0/1:79:48,31:48:1712:31:1089:-74.5359,0,-130.584	0/1:177:52,125:52:1864:125:4488:-350.805,0,-114.757	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:272:86,186:86:3088:186:6656:-517.234,0,-196.267	0/1:350:283,66:283:10097:66:2376:-108.737,0,-803.304	0/1:164:78,86:78:2746:86:3088:-228.778,0,-198.012	0/1:110:52,58:52:1844:58:2076:-153.997,0,-133.127	0/1:205:82,123:82:2943:123:4393:-333.831,0,-203.392	0/1:142:74,68:74:2615:68:2448:-177.828,0,-192.85	0/1:86:42,44:42:1504:44:1584:-116.963,0,-109.766	0/1:126:55,70:55:1968:70:2496:-186.962,0,-139.465	0/1:211:155,56:155:5553:56:2016:-118.196,0,-436.374	0/1:41:35,6:35:1260:6:216:-7.44828,0,-101.363	0/1:92:63,29:63:2264:29:1044:-66.58,0,-176.328	0/1:142:68,74:68:2436:74:2660:-196.899,0,-176.749	0/1:273:187,86:187:6693:86:3080:-195.247,0,-520.263	0/1:256:186,70:186:6646:70:2508:-148.909,0,-521.152	0/1:179:125,54:125:4475:54:1942:-121.172,0,-349.034	0/1:205:97,107:97:3446:107:3848:-284.744,0,-248.581	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/1:157:101,56:101:3620:56:2008:-133.732,0,-278.743	0/1:178:117,61:117:4200:61:2188:-143.602,0,-324.597	0/1:142:34,107:34:1201:107:3844:-303.469,0,-65.7059	0/1:238:132,106:132:4732:106:3808:-271.271,0,-354.393	0/1:153:83,70:83:2984:70:2501:-179.283,0,-222.734	0/1:146:116,30:116:4137:30:1076:-53.2025,0,-328.563	0/1:257:161,96:161:5773:96:3428:-231.367,0,-442.317	0/1:83:42,41:42:1496:41:1476:-108.151,0,-109.949	0/1:129:42,87:42:1504:87:3097:-240.124,0,-96.8217	0/1:124:36,88:36:1287:88:3168:-248.015,0,-78.8051	0/1:89:65,24:65:2324:24:864:-51.2909,0,-182.629	0/1:175:94,81:94:3364:81:2916:-209.994,0,-250.296	0/1:96:79,17:79:2840:17:612:-26.5146,0,-226.939	0/1:146:53,93:53:1863:93:3316:-254.707,0,-123.993	0/1:217:106,111:106:3788:111:3971:-292.255,0,-275.796
chr04	32568269	.	GTTAGGA	TTTAGGG,TTTAGGA	134269	PASS	AB=0.47466,0.521365;ABP=19.8477,14.9797;AC=145,43;AF=0.771277,0.228723;AN=188;AO=4684,1582;CIGAR=1X5M1X,1X6M;DP=6308;DPB=6308.57;DPRA=0,1.14371;EPP=10087.5,3360.55;EPPR=0;GTI=1;LEN=7,1;MEANALT=1.92553,2.3;MQM=59.9238,59.9962;MQMR=0;NS=94;NUMALT=2;ODDS=0.221429;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=165162,56622;QR=0;RO=0;RPL=10,9;RPP=10087.5,3360.55;RPPR=0;RPR=4674,1573;RUN=1,1;SAF=0,0;SAP=10174.2,3438.28;SAR=4684,1582;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14,0:0:0:14,0:496,0:-44.9743,-4.21442,0,-44.9743,-4.21442,-44.9743	1/1:48:0,47,0:0:0:47,0:1668,0:-150.087,-14.1484,0,-150.087,-14.1484,-150.087	1/1:113:0,113,0:0:0:113,0:3983,0:-358.634,-34.0164,0,-358.634,-34.0164,-358.634	1/1:138:0,138,0:0:0:138,0:4882,0:-439.539,-41.5421,0,-439.539,-41.5421,-439.539	1/2:20:0,14,6:0:0:14,6:487,216:-57.5723,-17.9843,-13.7699,-39.9442,0,-38.138	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:80:0,47,32:0:0:47,32:1672,1148:-230.007,-93.7437,-79.5953,-136.367,0,-126.734	1/1:56:0,55,0:0:0:55,0:1933,0:-173.885,-16.5567,0,-173.885,-16.5567,-173.885	1/1:43:0,43,0:0:0:43,0:1513,0:-136.442,-12.9443,0,-136.442,-12.9443,-136.442	1/1:104:0,103,0:0:0:103,0:3638,0:-327.403,-31.0061,0,-327.403,-31.0061,-327.403	1/2:54:0,29,25:0:0:29,25:1034,900:-158.081,-73.7953,-65.0654,-84.6436,0,-77.1178	1/1:62:0,62,0:0:0:62,0:2171,0:-195.625,-18.6639,0,-195.625,-18.6639,-195.625	1/1:62:0,60,0:0:0:60,0:2125,0:-191.174,-18.0618,0,-191.174,-18.0618,-191.174	1/1:59:0,57,0:0:0:57,0:2006,0:-180.546,-17.1587,0,-180.546,-17.1587,-180.546	1/1:46:0,45,0:0:0:45,0:1612,0:-145.03,-13.5464,0,-145.03,-13.5464,-145.03	1/1:57:0,57,0:0:0:57,0:2021,0:-182.162,-17.1587,0,-182.162,-17.1587,-182.162	1/2:30:0,18,12:0:0:18,12:644,432:-88.1204,-35.6088,-30.1903,-52.8705,0,-49.2581	1/1:22:0,22,0:0:0:22,0:761,0:-68.8068,-6.62266,0,-68.8068,-6.62266,-68.8068	1/2:18:0,7,11:0:0:7,11:252,392:-52.8721,-32.3087,-30.2015,-20.9217,0,-17.6104	1/2:128:0,54,74:0:0:54,74:1906,2648:-371.497,-216.29,-200.035,-155.561,0,-133.285	1/2:159:0,74,84:0:0:74,84:2599,2996:-455.894,-244.366,-222.089,-211.661,0,-186.374	1/2:49:0,27,21:0:0:27,21:964,752:-139.965,-61.3725,-53.2447,-78.6374,0,-72.3158	1/1:66:0,63,1:0:0:63,1:2223,36:-199.843,-18.9649,0,-196.905,-16.0274,-196.604	1/2:36:0,30,6:0:0:30,6:1063,216:-104.575,-17.9843,-8.95343,-86.9499,0,-85.1437	1/2:20:0,11,9:0:0:11,9:396,314:-58.2053,-25.8876,-22.5763,-32.6714,0,-29.9621	1/1:140:0,139,1:0:0:139,1:4924,36:-442.954,-41.8432,0,-440.017,-38.5459,-439.716	1/2:189:0,55,134:0:0:55,134:1926,4763:-545.192,-388.487,-371.931,-157.056,0,-116.718	1/1:23:0,22,0:0:0:22,0:788,0:-70.9901,-6.62266,0,-70.9901,-6.62266,-70.9901	1/1:164:0,164,0:0:0:164,0:5751,0:-517.716,-49.3689,0,-517.716,-49.3689,-517.716	1/2:133:0,73,60:0:0:73,60:2564,2152:-384.562,-175.885,-153.91,-209.032,0,-190.97	1/2:56:0,29,27:0:0:29,27:1020,972:-162.694,-79.6701,-70.9402,-83.3794,0,-75.2516	1/1:12:0,11,1:0:0:11,1:396,36:-35.6229,-3.31133,0,-32.6855,-0.0140851,-32.3845	1/2:13:0,9,4:0:0:9,4:312,144:-37.4598,-12.1095,-9.40023,-25.7061,0,-24.502	1/2:13:0,10,2:0:0:10,2:341,72:-33.5825,-5.91501,-2.90471,-27.7041,0,-27.1021	1/2:11:0,9,2:0:0:9,2:312,72:-31.5667,-6.23466,-3.52539,-25.6894,0,-25.0874	1/1:31:0,31,0:0:0:31,0:1103,0:-99.5798,-9.33193,0,-99.5798,-9.33193,-99.5798	1/2:129:0,69,59:0:0:69,59:2456,2120:-373.126,-172.987,-152.216,-200.175,0,-182.415	1/2:76:0,41,34:0:0:41,34:1455,1220:-218.182,-99.6381,-87.2959,-118.665,0,-108.43	1/1:38:0,38,0:0:0:38,0:1333,0:-120.267,-11.4391,0,-120.267,-11.4391,-120.267	1/1:17:0,13,0:0:0:13,0:468,0:-42.1094,-3.91339,0,-42.1094,-3.91339,-42.1094	1/1:75:0,74,1:0:0:74,1:2610,36:-234.783,-22.2762,0,-231.845,-18.979,-231.544	1/1:21:0,21,0:0:0:21,0:737,0:-66.6506,-6.32163,0,-66.6506,-6.32163,-66.6506	1/2:70:0,39,31:0:0:39,31:1369,1116:-202.83,-91.4198,-79.6796,-111.766,0,-102.434	1/2:59:0,39,20:0:0:39,20:1396,720:-172.948,-59.1082,-47.368,-114.199,0,-108.178	1/2:42:0,15,27:0:0:15,27:531,972:-122.921,-79.6701,-75.1546,-43.6065,0,-35.4786	1/1:23:0,23,0:0:0:23,0:816,0:-73.7617,-6.92369,0,-73.7617,-6.92369,-73.7617	1/1:64:0,63,0:0:0:63,0:2203,0:-198.083,-18.9649,0,-198.083,-18.9649,-198.083	1/2:125:0,49,76:0:0:49,76:1671,2728:-358.419,-222.884,-208.134,-135.882,0,-113.004	1/2:86:0,43,42:0:0:43,42:1517,1493:-244.913,-121.66,-108.715,-123.247,0,-110.604	1/1:88:0,87,1:0:0:87,1:3073,36:-276.44,-26.1896,0,-273.503,-22.8924,-273.201	1/2:92:0,39,53:0:0:39,53:1376,1904:-267.703,-155.683,-143.943,-112.375,0,-96.4205	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:89:0,54,35:0:0:54,35:1917,1256:-258.997,-102.805,-86.549,-156.55,0,-146.014	1/2:50:0,26,24:0:0:26,24:905,864:-144.44,-70.8578,-63.0311,-73.936,0,-66.7113	1/2:15:0,10,4:0:0:10,4:348,144:-40.1039,-11.8056,-8.79526,-28.3496,0,-27.1455	1/1:100:0,99,0:0:0:99,0:3492,0:-314.165,-29.802,0,-314.165,-29.802,-314.165	1/1:19:0,19,0:0:0:19,0:662,0:-59.9024,-5.71957,0,-59.9024,-5.71957,-59.90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chr04	32568282	.	A	C	26822.5	PASS	AB=0.517184;ABP=10.7719;AC=43;AF=0.228723;AN=188;AO=1573;CIGAR=1X;DP=6359;DPB=6359;DPRA=1.13437;EPP=3375.44;EPPR=10343.6;GTI=0;LEN=1;MEANALT=1;MQM=59.9873;MQMR=59.897;NS=94;NUMALT=1;ODDS=1.13422;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56225;QR=171536;RO=4786;RPL=1568;RPP=3375.44;RPPR=10343.6;RPR=5;RUN=1;SAF=0;SAP=3418.74;SAR=1573;SRF=0;SRP=10395.7;SRR=4786;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:115:115,0:115:4115:0:0:0,-34.6184,-370.327	0/0:142:142,0:142:5100:0:0:0,-42.7463,-459.141	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6729	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:81:49,32:49:1760:32:1144:-78.8861,0,-134.287	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.563	0/0:106:106,0:106:3789:0:0:0,-31.9092,-341.119	0/1:54:29,25:29:1044:25:900:-65.0654,0,-78.0192	0/0:65:65,0:65:2332:0:0:0,-19.5669,-209.95	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.084	0/0:61:61,0:61:2174:0:0:0,-18.3628,-195.903	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4943	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:129:56,73:56:2008:73:2605:-195.864,0,-142.16	0/1:161:78,83:78:2804:83:2971:-219.156,0,-203.943	0/1:50:28,22:28:1000:22:792:-56.5542,0,-75.2639	0/0:68:67,1:67:2408:1:36:0,-16.8718,-213.376	0/1:36:30,6:30:1076:6:207:-8.12981,0,-86.3158	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	0/0:142:141,1:141:5057:1:36:0,-39.148,-451.674	0/1:187:55,132:55:1961:132:4729:-369.474,0,-120.47	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:166:166,0:166:5956:0:0:0,-49.971,-536.146	0/1:132:72,60:72:2592:60:2152:-154.211,0,-193.792	0/1:55:29,26:29:1006:26:932:-67.6422,0,-74.2899	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:13:10,3:10:360:3:108:-6.14757,0,-28.8309	0/1:11:9,2:9:324:2:57:-2.10198,0,-26.0026	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/1:132:72,60:72:2584:60:2134:-152.589,0,-193.044	0/1:77:41,36:41:1468:36:1281:-92.4136,0,-109.235	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4088	0/0:77:76,1:76:2705:1:36:0,-19.581,-240.081	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:72:41,31:41:1468:31:1116:-79.0775,0,-110.742	0/1:58:39,19:39:1400:19:684:-44.4306,0,-108.839	0/1:45:17,28:17:608:28:1004:-77.1295,0,-41.5057	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.709	0/1:122:48,74:48:1701:74:2641:-201.21,0,-116.648	0/1:82:42,40:42:1508:40:1406:-102.15,0,-111.33	0/0:88:87,1:87:3112:1:36:0,-22.8924,-276.709	0/1:92:39,53:39:1404:53:1896:-143.223,0,-98.9084	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:89:53,36:53:1904:36:1284:-89.0671,0,-144.846	0/1:50:26,24:26:936:24:864:-63.0311,0,-69.508	0/1:16:11,5:11:379:5:176:-11.3685,0,-29.6241	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.477	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:20:8,12:8:288:12:417:-31.8405,0,-20.2468	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:248:248,0:248:8911:0:0:0,-74.6554,-800.854	0/1:153:70,83:70:2504:83:2969:-221.381,0,-179.553	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.87	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.564	0/0:140:138,2:138:4937:2:72:0,-35.3075,-437.572	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.583	0/0:28:27,1:27:972:1:36:0,-4.83056,-84.1996	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:35:12,23:12:423:23:793:-61.1477,0,-27.869	0/1:33:16,17:16:572:17:608:-45.118,0,-41.8794	0/1:70:37,33:37:1332:33:1184:-85.7962,0,-99.0542	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.724	0/1:94:46,48:46:1644:48:1716:-126.429,0,-119.822	0/1:209:84,125:84:3001:125:4473:-339.823,0,-207.405	0/1:63:34,29:34:1211:29:1029:-73.9563,0,-90.3284	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.238	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/1:87:32,55:32:1148:55:1966:-151.025,0,-77.4402	0/1:79:32,47:32:1135:47:1688:-128.426,0,-78.6766	0/0:160:160,0:160:5732:0:0:0,-48.1648,-515.993	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.497	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:40:16,24:16:576:24:860:-65.6806,0,-40.1338	0/1:100:44,56:44:1584:56:2016:-151.61,0,-112.749	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.021	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:42:20,22:20:720:22:792:-58.9624,0,-52.4855	0/1:83:43,40:43:1548:40:1436:-104.552,0,-114.628	0/1:46:18,28:18:644:28:1003:-76.7383,0,-44.4432	0/0:146:146,0:146:5248:0:0:0,-43.9504,-472.454	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951
chr04	32568299	.	T	G	100577	PASS	AB=0.482337;ABP=11.218;AC=145;AF=0.771277;AN=188;AO=4781;CIGAR=1X;DP=6357;DPB=6357;DPRA=0;EPP=10384.8;EPPR=3420.91;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.8812;MQMR=59.9873;NS=94;NUMALT=1;ODDS=1.05364;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170574;QR=55470;RO=1574;RPL=4781;RPP=10384.8;RPPR=3420.91;RPR=0;RUN=1;SAF=0;SAP=10384.8;SAR=4781;SRF=0;SRP=3420.91;SRR=1574;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:45:0,45:0:0:45:1601:-144.378,-13.5464,0	1/1:112:0,112:0:0:112:3954:-356.002,-33.7154,0	1/1:141:0,141:0:0:141:5028:-452.669,-42.4452,0	0/1:19:6,13:6:212:13:468:-36.7401,0,-13.7052	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:81:32,49:32:1079:49:1756:-133.927,0,-73.025	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	1/1:46:0,46:0:0:46:1633:-147.151,-13.8474,0	1/1:103:0,103:0:0:103:3670:-330.496,-31.0061,0	0/1:54:25,29:25:896:29:1040:-77.6587,0,-64.7047	1/1:64:0,64:0:0:64:2263:-203.846,-19.2659,0	1/1:64:0,64:0:0:64:2266:-204.146,-19.2659,0	1/1:62:0,61:0:0:61:2170:-195.184,-18.3628,0	1/1:47:0,47:0:0:47:1683:-151.72,-14.1484,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:32:12,20:12:428:20:720:-55.4943,0,-29.2258	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	0/1:128:73,55:73:2546:55:1972:-139.223,0,-190.859	0/1:158:83,75:83:2897:75:2688:-194.412,0,-213.407	0/1:50:22,28:22:762:28:1004:-75.6244,0,-53.8436	1/1:66:1,65:1:36:65:2332:-206.539,-16.2697,0	0/1:36:5,31:5:176:31:1112:-89.5543,0,-5.34794	0/1:20:9,11:9:316:11:396:-29.9621,0,-22.7583	1/1:139:0,139:0:0:139:4944:-445.108,-41.8432,0	0/1:188:132,56:132:4685:56:1996:-123.315,0,-365.22	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:162:0,162:0:0:162:5808:-522.832,-48.7669,0	0/1:134:61,73:61:2169:73:2608:-194.63,0,-155.137	0/1:56:27,29:27:945:29:1040:-77.0543,0,-68.5046	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:13:3,10:3:108:10:352:-28.1048,0,-6.14757	0/1:11:2,9:2:72:9:316:-25.2756,0,-3.52539	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:134:61,73:61:2176:73:2611:-194.871,0,-155.769	0/1:78:35,43:35:1244:43:1533:-114.781,0,-88.7843	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:17:0,17:0:0:17:612:-55.4088,-5.11751,0	1/1:76:1,75:1:36:75:2673:-237.202,-19.28,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:72:31,41:31:1112:41:1459:-109.931,0,-78.7172	0/1:58:19,39:19:672:39:1400:-108.839,0,-43.3471	0/1:46:28,18:28:993:18:635:-43.6296,0,-75.8351	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:66:0,66:0:0:66:2356:-212.283,-19.868,0	0/1:119:73,46:73:2554:46:1634:-111.438,0,-194.287	0/1:84:42,42:42:1466:42:1507:-110.319,0,-106.944	1/1:90:1,89:1:36:89:3191:-283.815,-23.4944,0	0/1:88:50,38:50:1741:38:1356:-95.8498,0,-130.482	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:87:33,54:33:1172:54:1925:-147.335,0,-79.5933	0/1:51:25,26:25:884:26:932:-68.8463,0,-64.5258	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	1/1:99:0,99:0:0:99:3544:-319.161,-29.802,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:46:0,46:0:0:46:1635:-147.437,-13.8474,0	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	1/1:73:0,73:0:0:73:2607:-234.878,-21.9752,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:250:0,250:0:0:250:8875:-797.633,-75.2575,0	0/1:151:84,67:84:2958:67:2404:-171.161,0,-220.995	1/1:46:0,46:0:0:46:1648:-148.564,-13.8474,0	1/1:46:0,46:0:0:46:1636:-147.529,-13.8474,0	1/1:140:2,138:2:72:138:4930:-436.996,-35.3075,0	1/1:112:0,112:0:0:112:3994:-359.646,-33.7154,0	1/1:29:1,28:1:36:28:1004:-87.0776,-5.1316,0	1/1:27:0,27:0:0:27:949:-85.7228,-8.12781,0	0/1:37:24,13:24:841:13:468:-31.3215,0,-64.8683	0/1:35:18,17:18:629:17:608:-44.516,0,-46.3977	0/1:70:32,38:32:1144:38:1351:-100.761,0,-82.1974	1/1:67:0,67:0:0:67:2377:-214.165,-20.169,0	0/1:93:47,46:47:1653:46:1644:-120.123,0,-121.06	0/1:215:129,86:129:4526:86:3065:-211.356,0,-342.79	0/1:62:28,34:28:1000:34:1216:-91.0756,0,-71.6515	1/1:87:0,87:0:0:87:3097:-278.242,-26.1896,0	0/1:26:13,13:13:460:13:468:-34.6329,0,-33.9086	0/1:85:52,32:52:1829:32:1137:-76.9908,0,-139.243	0/1:78:46,32:46:1591:32:1148:-80.1486,0,-119.993	1/1:163:0,163:0:0:163:5813:-523.284,-49.0679,0	1/1:66:0,66:0:0:66:2364:-213.016,-19.868,0	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	0/1:40:24,16:24:845:16:576:-40.1338,0,-64.3259	0/1:103:59,44:59:2082:44:1576:-111.125,0,-156.641	1/1:19:0,19:0:0:19:669:-60.5339,-5.71957,0	1/1:65:0,65:0:0:65:2306:-207.8,-19.567,0	1/1:53:0,53:0:0:53:1887:-170.108,-15.9546,0	0/1:42:22,20:22:779:20:720:-52.4855,0,-57.7888	0/1:84:40,44:40:1420:44:1574:-116.665,0,-102.811	0/1:44:29,15:29:1040:15:536:-35.3295,0,-80.669	1/1:145:0,145:0:0:145:5180:-466.341,-43.6494,0	1/1:83:0,83:0:0:83:2952:-265.915,-24.9855,0
chr04	32599282	.	C	T	72084.9	PASS	AB=0.506754;ABP=3.91957;AC=140;AF=0.752688;AN=186;AO=3403;CIGAR=1X;DP=4538;DPB=4538;DPRA=0;EPP=7297.29;EPPR=2454.61;GTI=2;LEN=1;MEANALT=1.02151;MQM=58.9265;MQMR=59.7432;NS=93;NUMALT=1;ODDS=0.264156;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121999;QR=40503;RO=1133;RPL=3392;RPP=7297.29;RPPR=2454.61;RPR=11;RUN=1;SAF=0;SAP=7392.53;SAR=3403;SRF=0;SRP=2463.29;SRR=1133;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1345:-121.13,-11.4391,0	1/1:17:0,17:0:0:17:612:-55.3685,-5.11751,0	1/1:46:0,46:0:0:46:1652:-147.648,-13.8474,0	1/1:66:0,66:0:0:66:2372:-213.645,-19.868,0	0/1:31:11,20:11:396:20:705:-54.4362,0,-26.6508	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:58:30,28:30:1076:28:1008:-73.5723,0,-79.6913	1/1:65:0,65:0:0:65:2321:-208.691,-19.567,0	1/1:43:0,43:0:0:43:1544:-138.595,-12.9443,0	1/1:46:0,46:0:0:46:1639:-147.704,-13.8474,0	0/1:71:31,40:31:1116:40:1436:-108.147,0,-79.3762	1/1:77:0,77:0:0:77:2768:-248.776,-23.1793,0	1/1:69:0,69:0:0:69:2480:-223.417,-20.7711,0	1/1:73:0,73:0:0:73:2609:-234.724,-21.9752,0	1/1:64:0,64:0:0:64:2300:-207.108,-19.2659,0	1/1:53:0,53:0:0:53:1896:-170.837,-15.9546,0	0/1:39:19,20:19:680:20:720:-53.366,0,-49.789	1/1:31:1,30:1:32:30:1072:-93.3832,-6.13262,0	0/1:27:14,13:14:504:13:468:-34.3059,0,-37.5703	0/1:65:26,39:26:936:39:1400:-106.723,0,-64.9925	0/1:80:36,44:36:1288:44:1562:-116.76,0,-92.132	0/1:54:33,21:33:1188:21:748:-51.3873,0,-90.973	1/1:62:0,62:0:0:62:2220:-199.981,-18.6639,0	1/1:23:1,22:1:36:22:792:-68.0028,-3.32542,0	0/1:24:9,15:9:324:15:540:-41.6944,0,-22.2811	1/1:90:0,90:0:0:90:3232:-291.035,-27.0927,0	0/1:122:55,67:55:1968:67:2404:-179.141,0,-140.532	1/1:22:0,22:0:0:22:792:-71.4013,-6.62266,0	1/1:86:0,86:0:0:86:3077:-277.152,-25.8886,0	0/1:72:39,33:39:1400:33:1188:-85.4246,0,-104.611	0/1:64:30,33:30:1076:33:1184:-87.3452,0,-77.8232	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4909	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.4973	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:150:72,78:72:2580:78:2800:-205.459,0,-187.263	0/1:58:37,21:37:1302:21:752:-50.5182,0,-99.79	1/1:60:0,60:0:0:60:2156:-193.261,-18.0618,0	.:.:.:.:.:.:.:.	1/1:51:0,51:0:0:51:1821:-164.035,-15.3525,0	1/1:35:0,35:0:0:35:1260:-113.674,-10.5361,0	0/1:56:25,31:25:892:31:1101:-82.3704,0,-63.742	0/1:36:13,23:13:468:23:828:-64.002,0,-31.6226	0/1:40:20,20:20:716:20:720:-52.9398,0,-52.7242	1/1:50:0,50:0:0:50:1796:-161.894,-15.0515,0	1/1:38:0,38:0:0:38:1353:-120.239,-11.4391,0	0/1:62:27,35:27:964:35:1237:-91.7389,0,-68.413	0/1:50:22,28:22:792:28:1004:-75.185,0,-56.5542	1/1:49:0,49:0:0:49:1760:-158.545,-14.7505,0	0/1:63:35,28:35:1256:28:1004:-71.6976,0,-94.3795	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	0/1:44:25,19:25:884:19:684:-48.6261,0,-66.6312	0/1:34:19,15:19:672:15:540:-38.6115,0,-50.5718	0/1:13:7,6:7:252:6:216:-15.8737,0,-19.1156	1/1:71:0,71:0:0:71:2541:-227.64,-21.3731,0	1/1:13:0,13:0:0:13:468:-42.4503,-3.91339,0	1/1:5:0,5:0:0:5:176:-16.1846,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:42:22,20:22:788:20:705:-51.1216,0,-58.6015	1/1:97:1,96:1:36:96:3456:-307.519,-25.6016,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:64:0,64:0:0:64:2300:-206.423,-19.2659,0	0/1:62:29,33:29:1040:33:1188:-88.5632,0,-75.1642	0/1:33:4,29:4:144:29:1040:-83.9632,0,-3.37963	1/1:17:0,17:0:0:17:612:-55.4041,-5.11751,0	1/1:56:0,56:0:0:56:2004:-180.479,-16.8577,0	1/1:41:0,41:0:0:41:1470:-132.409,-12.3422,0	1/1:56:0,56:0:0:56:2012:-181.255,-16.8577,0	1/1:18:0,18:0:0:18:640:-57.1323,-5.41854,0	0/1:24:15,9:15:540:9:324:-22.2211,0,-41.7103	0/1:16:7,9:7:252:9:324:-24.6847,0,-18.2125	0/1:79:40,39:40:1440:39:1389:-101.481,0,-106.116	1/1:30:0,30:0:0:30:1080:-97.452,-9.0309,0	0/1:76:28,48:28:985:48:1728:-132.217,0,-66.0645	0/1:76:40,36:40:1425:36:1277:-91.5676,0,-105.663	0/1:25:13,12:13:453:12:432:-31.6594,0,-33.5562	1/1:68:0,68:0:0:68:2440:-219.537,-20.47,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:47:34,13:34:1205:13:468:-28.3112,0,-94.6009	0/1:60:32,28:32:1144:28:1000:-71.9215,0,-84.9917	1/1:56:0,56:0:0:56:2012:-181.337,-16.8577,0	1/1:57:0,57:0:0:57:2037:-183.344,-17.1587,0	1/1:56:0,56:0:0:56:2012:-181.323,-16.8577,0	0/1:44:24,20:24:864:20:720:-51.8729,0,-64.8326	0/1:106:51,55:51:1836:55:1976:-146.006,0,-133.609	1/1:16:0,16:0:0:16:576:-52.1716,-4.81648,0	1/1:60:0,60:0:0:60:2148:-193.297,-18.0618,0	1/1:66:0,66:0:0:66:2376:-213.814,-19.868,0	0/1:58:26,32:26:924:32:1152:-86.5132,0,-66.0179	0/1:128:65,62:65:2324:62:2216:-160.906,0,-170.977	0/1:63:38,25:38:1345:25:897:-61.7075,0,-102.252	1/1:58:0,58:0:0:58:2088:-187.344,-17.4597,0	1/1:67:0,67:0:0:67:2409:-215.709,-20.169,0
chr04	32655335	.	TTT	TTC,CTC	161139	PASS	AB=0.552859,0.441478;ABP=92.9987,113.315;AC=143,43;AF=0.768817,0.231183;AN=186;AO=6292,1644;CIGAR=2M1X,1X1M1X;DP=7972;DPB=7972;DPRA=0,1.03447;EPP=13665.9,3572.91;EPPR=11.6962;GTI=1;LEN=1,3;MEANALT=1.78495,2.33333;MQM=44.2929,38.7889;MQMR=52.5;NS=93;NUMALT=2;ODDS=3.0467;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=224652,58321;QR=144;RO=4;RPL=6292,1644;RPP=13665.9,3572.91;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13665.9,3572.91;SAR=6292,1644;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:83:0,83,0:0:0:83,0:2925,0:-263.098,-24.9855,0,-263.098,-24.9855,-263.098	1/1:59:0,59,0:0:0:59,0:2080,0:-187.147,-17.7608,0,-187.147,-17.7608,-187.147	1/1:141:0,140,0:0:0:140,0:4986,0:-448.04,-42.1442,0,-448.04,-42.1442,-448.04	1/1:175:0,175,0:0:0:175,0:6212,0:-536.572,-52.6803,0,-536.572,-52.6803,-536.572	1/2:74:0,46,28:0:0:46,28:1608,988:-200.902,-76.1786,-62.3312,-125.058,0,-116.629	1/2:46:0,25,20:0:0:25,20:896,718:-128.561,-55.6394,-48.1137,-72.991,0,-66.9704	1/2:103:0,61,42:0:0:61,42:2192,1488:-283.714,-112.161,-93.7986,-171.889,0,-159.246	1/1:97:0,97,0:0:0:97,0:3474,0:-311.047,-29.1999,0,-311.047,-29.1999,-311.047	1/1:143:0,143,0:0:0:143,0:5064,0:-455.447,-43.0473,0,-455.447,-43.0473,-455.447	1/1:95:0,95,0:0:0:95,0:3400,0:-292,-28.5979,0,-292,-28.5979,-292	1/2:41:0,20,21:0:0:20,21:720,749:-113.85,-57.578,-51.5574,-56.6133,0,-50.2917	1/1:91:0,91,0:0:0:91,0:3253,0:-292.236,-27.3937,0,-292.236,-27.3937,-292.236	1/1:102:0,102,0:0:0:102,0:3626,0:-326.123,-30.7051,0,-326.123,-30.7051,-326.123	1/1:55:0,55,0:0:0:55,0:1976,0:-171.409,-16.5567,0,-171.409,-16.5567,-171.409	1/1:70:0,68,0:0:0:68,0:2436,0:-210.007,-20.47,0,-210.007,-20.47,-210.007	1/1:56:0,54,0:0:0:54,0:1944,0:-165.255,-16.2556,0,-165.255,-16.2556,-165.255	1/2:26:0,16,10:0:0:16,10:576,358:-74.0139,-27.2802,-22.4637,-47.0762,0,-44.0659	1/1:40:0,40,0:0:0:40,0:1432,0:-128.668,-12.0412,0,-128.668,-12.0412,-128.668	1/2:38:0,22,16:0:0:22,16:792,568:-107.566,-43.4517,-36.829,-64.4572,0,-59.6407	1/2:156:0,101,55:0:0:101,55:3576,1973:-426.869,-150.791,-120.387,-276.416,0,-259.859	1/2:144:0,71,73:0:0:71,73:2533,2559:-391.862,-194.188,-172.815,-198.01,0,-176.034	1/2:80:0,41,38:0:0:41,38:1468,1350:-215.351,-100.91,-88.5679,-114.537,0,-103.098	1/1:112:0,111,0:0:0:111,0:3969,0:-343.294,-33.4143,0,-343.294,-33.4143,-343.294	1/1:88:0,86,2:0:0:86,2:3057,72:-260.451,-25.8886,0,-254.891,-19.9858,-254.289	1/2:90:0,66,24:0:0:66,24:2357,832:-249.372,-64.6657,-44.7977,-185.041,0,-177.817	1/1:265:0,265,0:0:0:265,0:9474,0:-809.019,-79.773,0,-809.019,-79.773,-809.019	1/2:255:0,137,118:0:0:137,118:4900,4214:-702.246,-324.121,-282.88,-378.464,0,-342.942	1/1:33:0,33,0:0:0:33,0:1184,0:-102.336,-9.93399,0,-102.336,-9.93399,-102.336	1/1:206:0,206,0:0:0:206,0:7381,0:-635.004,-62.0122,0,-635.004,-62.0122,-635.004	1/2:91:0,42,49:0:0:42,49:1504,1745:-249.254,-133.373,-120.73,-116.219,0,-101.468	1/2:72:0,40,31:0:0:40,31:1417,1083:-192.863,-82.049,-70.0078,-110.898,0,-101.567	1/2:4:0,2,2:0:0:2,2:68,72:-11.2259,-5.90278,-5.30072,-5.65904,0,-5.05698	1/2:18:0,9,9:0:0:9,9:320,324:-50.8518,-25.6826,-22.9733,-25.5145,0,-22.8052	.:.:.:.:.:.:.:.	1/2:3:0,2,1:0:0:2,1:72,30:-8.41237,-2.4867,-1.88464,-6.23141,0,-5.93038	1/1:9:0,9,0:0:0:9,0:305,0:-27.756,-2.70927,0,-27.756,-2.70927,-27.756	1/2:205:0,115,88:0:0:115,88:4116,3147:-554.289,-234.814,-200.195,-319.491,0,-293	1/2:77:0,51,26:0:0:51,26:1796,917:-207.887,-71.2966,-55.9441,-136.925,0,-129.098	1/1:35:0,35,0:0:0:35,0:1233,0:-110.932,-10.5361,0,-110.932,-10.5361,-110.932	1/1:6:0,6,0:0:0:6,0:216,0:-18.9997,-1.80618,0,-18.9997,-1.80618,-18.9997	1/1:77:0,77,0:0:0:77,0:2753,0:-237.723,-23.1793,0,-237.723,-23.1793,-237.723	1/1:27:0,27,0:0:0:27,0:968,0:-83.3341,-8.12781,0,-83.3341,-8.12781,-83.3341	1/2:150:0,97,49:0:0:97,49:3461,1735:-399.979,-134.155,-104.955,-265.897,0,-251.147	1/2:62:0,36,26:0:0:36,26:1288,931:-171.583,-71.1076,-60.2705,-100.814,0,-92.9874	1/2:55:0,26,29:0:0:26,29:928,1032:-149.666,-79.3566,-71.5298,-70.644,0,-61.9142	1/1:142:0,142,0:0:0:142,0:5058,0:-435.21,-42.7463,0,-435.21,-42.7463,-435.21	1/1:142:0,142,0:0:0:142,0:5073,0:-456.137,-42.7463,0,-456.137,-42.7463,-456.137	1/2:126:0,70,56:0:0:70,56:2516,1980:-344.388,-151.058,-129.986,-193.666,0,-176.809	1/2:130:0,76,54:0:0:76,54:2736,1912:-355.995,-145.755,-122.877,-210.576,0,-194.32	1/1:67:0,67,0:0:0:67,0:2396,0:-204.35,-20.169,0,-204.35,-20.169,-204.35	1/2:172:0,115,57:0:0:115,57:4128,2030:-469.371,-151.58,-116.961,-318.123,0,-300.965	1/1:2:0,2,0:0:0:2,0:72,0:-6.56353,-0.60206,0,-6.56353,-0.60206,-6.56353	1/2:115:0,77,38:0:0:77,38:2738,1328:-325.973,-103.198,-80.0183,-223.116,0,-211.677	1/2:44:0,14,30:0:0:14,30:504,1063:-119.335,-79.9323,-75.7179,-39.7429,0,-30.712	1/2:10:0,6,4:0:0:6,4:216,144:-29.0889,-11.4632,-9.65703,-17.9749,0,-16.7708	1/1:88:0,88,0:0:0:88,0:3137,0:-272.09,-26.4906,0,-272.09,-26.4906,-272.09	1/1:96:0,95,1:0:0:95,1:3396,34:-289.508,-28.5979,0,-287.687,-26.5401,-287.386	1/1:2:0,2,0:0:0:2,0:72,0:-6.56353,-0.60206,0,-6.56353,-0.6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chr04	32655350	.	C	T	127627	PASS	AB=0.559543;ABP=116.274;AC=143;AF=0.768817;AN=186;AO=6322;CIGAR=1X;DP=7951;DPB=7951;DPRA=0;EPP=13731.1;EPPR=3540.34;GTI=1;LEN=1;MEANALT=1;MQM=44.1606;MQMR=38.86;NS=93;NUMALT=1;ODDS=2.45361;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226379;QR=58175;RO=1629;RPL=6322;RPP=13731.1;RPPR=3540.34;RPR=0;RUN=1;SAF=0;SAP=13731.1;SAR=6322;SRF=0;SRP=3540.34;SRR=1629;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:84:0,84:0:0:84:3005:-270.291,-25.2865,0	1/1:58:0,58:0:0:58:2080:-187.148,-17.4597,0	1/1:143:0,143:0:0:143:5117:-459.03,-43.0473,0	1/1:173:1,172:1:36:172:6176:-528.746,-48.4809,0	0/1:74:27,47:27:968:47:1669:-120.978,0,-60.0732	0/1:45:21,24:21:748:24:864:-64.3713,0,-50.9663	0/1:100:40,60:40:1428:60:2160:-157.106,0,-89.8679	1/1:97:0,97:0:0:97:3479:-311.68,-29.1999,0	1/1:140:0,140:0:0:140:5012:-450.766,-42.1442,0	1/1:98:0,98:0:0:98:3524:-301.704,-29.5009,0	0/1:41:21,20:21:752:20:701:-48.7729,0,-51.7008	1/1:93:0,93:0:0:93:3340:-299.909,-27.9958,0	1/1:99:0,99:0:0:99:3560:-320.066,-29.802,0	1/1:56:0,56:0:0:56:1997:-173.11,-16.8577,0	1/1:71:0,71:0:0:71:2548:-217.606,-21.3731,0	1/1:57:0,57:0:0:57:2048:-173.53,-17.1587,0	0/1:25:9,16:9:324:16:568:-43.7498,0,-19.8126	1/1:39:1,38:1:21:38:1368:-120.812,-9.64022,0	0/1:37:16,21:16:572:21:756:-56.7031,0,-37.451	0/1:156:55,101:55:1968:101:3624:-263.518,0,-120.051	0/1:140:69,71:69:2480:71:2544:-178.352,0,-168.356	0/1:80:38,42:38:1364:42:1500:-104.414,0,-89.3374	1/1:111:0,111:0:0:111:3964:-342.249,-33.4143,0	1/1:89:2,87:2:68:87:3119:-260.361,-20.5743,0	0/1:89:23,66:23:798:66:2372:-179.41,0,-42.1603	1/1:268:0,268:0:0:268:9583:-818.286,-80.676,0	0/1:257:118,139:118:4225:139:4988:-349.632,0,-282.865	1/1:33:0,33:0:0:33:1178:-102.118,-9.93399,0	1/1:206:0,206:0:0:206:7382:-635.563,-62.0122,0	0/1:91:48,43:48:1724:43:1540:-103.856,0,-118.946	0/1:67:30,37:30:1076:37:1309:-92.5412,0,-70.0881	0/1:4:2,2:2:72:2:72:-5.35941,0,-5.30072	0/1:18:9,9:9:324:9:309:-21.8562,0,-22.9733	.:.:.:.:.:.:.:.	0/1:3:1,2:1:21:2:72:-5.93038,0,-1.16397	1/1:9:0,9:0:0:9:320:-29.115,-2.70927,0	0/1:203:90,113:90:3213:113:4064:-288.989,0,-206.364	0/1:79:26,53:26:917:53:1896:-136.573,0,-55.1973	1/1:34:0,34:0:0:34:1209:-108.654,-10.235,0	1/1:6:0,6:0:0:6:216:-18.9997,-1.80618,0	1/1:77:0,77:0:0:77:2768:-239.029,-23.1793,0	1/1:25:0,25:0:0:25:900:-77.2695,-7.52575,0	0/1:148:51,97:51:1805:97:3476:-252.285,0,-107.679	0/1:62:26,36:26:928:36:1292:-93.2334,0,-60.0869	0/1:54:29,25:29:1044:25:900:-59.6075,0,-72.6572	1/1:144:0,144:0:0:144:5125:-441.319,-43.3483,0	1/1:146:0,146:0:0:146:5228:-470.071,-43.9504,0	0/1:128:55,73:55:1950:73:2616:-184.046,0,-127.518	0/1:132:53,79:53:1892:79:2836:-202.471,0,-121.192	1/1:69:0,69:0:0:69:2480:-211.429,-20.7711,0	0/1:169:55,114:55:1957:114:4068:-297.026,0,-112.204	1/1:2:0,2:0:0:2:72:-6.56353,-0.60206,0	0/1:114:37,77:37:1328:77:2737:-211.894,0,-79.9154	0/1:42:28,14:28:1008:14:500:-31.0253,0,-71.0451	0/1:10:4,6:4:144:6:216:-16.7708,0,-9.65703	1/1:93:0,93:0:0:93:3333:-288.782,-27.9958,0	1/1:97:0,97:0:0:97:3465:-293.675,-29.1999,0	1/1:2:0,2:0:0:2:72:-6.56353,-0.60206,0	1/1:5:0,5:0:0:5:180:-15.9772,-1.50515,0	0/1:86:41,45:41:1460:45:1612:-113.79,0,-97.7236	1/1:82:0,82:0:0:82:2936:-251.977,-24.6845,0	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	1/1:131:0,131:0:0:131:4667:-401.176,-39.4349,0	0/1:134:57,77:57:2052:77:2760:-192.976,0,-133.006	1/1:41:1,40:1:36:40:1440:-119.355,-8.91863,0	1/1:71:0,71:0:0:71:2530:-216.592,-21.3731,0	1/1:176:2,174:2:57:174:6244:-530.127,-47.568,0	1/1:118:0,118:0:0:118:4224:-360.326,-35.5215,0	1/1:29:1,28:1:36:28:1004:-82.7012,-5.30627,0	1/1:84:0,84:0:0:84:3011:-270.954,-25.2865,0	0/1:56:27,29:27:964:29:1030:-71.4037,0,-64.8544	0/1:15:7,8:7:252:8:288:-20.4588,0,-16.3234	0/1:150:62,88:62:2224:88:3141:-236.578,0,-146.265	1/1:84:0,84:0:0:84:3001:-269.656,-25.2865,0	0/1:106:50,56:50:1773:56:2012:-139.453,0,-119.611	0/1:136:69,67:69:2450:67:2396:-164.321,0,-166.734	0/1:30:13,17:13:468:17:608:-45.9849,0,-30.4289	1/1:57:0,57:0:0:57:2048:-184.427,-17.1587,0	0/1:16:11,5:11:396:5:180:-11.5986,0,-29.4195	0/1:83:30,53:30:1076:53:1896:-137.845,0,-67.7666	0/1:104:52,52:52:1864:52:1853:-133.133,0,-128.806	1/1:220:1,219:1:36:219:7856:-672.8,-63.7597,0	1/1:65:0,65:0:0:65:2332:-202.125,-19.567,0	1/1:89:0,89:0:0:89:3188:-273.046,-26.7917,0	0/1:62:30,32:30:1064:32:1148:-80.771,0,-72.4738	0/1:146:81,65:81:2900:65:2332:-154.283,0,-199.743	1/1:28:0,28:0:0:28:1004:-90.3359,-8.42884,0	1/1:90:0,90:0:0:90:3232:-290.459,-27.0927,0	1/1:90:0,90:0:0:90:3217:-289.379,-27.0927,0	0/1:29:18,11:18:644:11:396:-25.935,0,-47.2754	0/1:82:50,32:50:1792:32:1144:-73.5624,0,-127.387	0/1:75:41,34:41:1476:34:1205:-81.2204,0,-103.293	1/1:68:0,68:0:0:68:2436:-208.761,-20.47,0	1/1:125:0,125:0:0:125:4475:-381.432,-37.6288,0
chr04	32657528	.	G	A	14488.7	PASS	AB=0.481303;ABP=8.69418;AC=44;AF=0.236559;AN=186;AO=905;CIGAR=1X;DP=4279;DPB=4279;DPRA=0.873372;EPP=1968.19;EPPR=7236.44;GTI=1;LEN=1;MEANALT=1.04348;MQM=53.4011;MQMR=59.5654;NS=93;NUMALT=1;ODDS=0.924322;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32320;QR=120354;RO=3371;RPL=0;RPP=1968.19;RPPR=7236.44;RPR=905;RUN=1;SAF=905;SAP=1968.19;SAR=0;SRF=3371;SRP=7323.04;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5833	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.006	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.331	0/0:121:121,0:121:4324:0:0:0,-36.4246,-389.327	0/1:19:10,9:10:360:9:324:-23.7229,0,-27.0247	0/1:30:14,16:14:500:16:564:-41.4741,0,-36.3053	0/1:24:14,10:14:504:10:356:-25.0267,0,-38.4734	0/0:80:80,0:80:2828:0:0:0,-24.0824,-254.681	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.871	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.833	0/1:23:13,10:13:455:10:360:-25.5526,0,-34.3573	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.025	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.555	0/0:59:59,0:59:2120:0:0:0,-17.7608,-190.737	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.696	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.42	0/1:26:18,8:18:644:8:288:-18.1906,0,-50.4336	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2366	0/1:19:12,7:12:432:7:252:-17.2458,0,-33.4878	0/1:25:17,8:17:603:8:285:-18.4059,0,-46.9111	0/1:19:10,9:10:356:9:324:-23.7193,0,-26.6598	0/1:28:9,19:9:324:19:680:-52.9461,0,-21.0761	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.656	0/0:35:33,2:33:1184:2:72:0,-3.84077,-100.159	0/1:15:9,6:9:320:6:201:-13.8781,0,-24.6197	0/0:127:127,0:127:4532:0:0:0,-38.2308,-408.042	0/1:101:51,50:51:1798:50:1792:-129.723,0,-131.687	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9781	0/0:118:117,0:117:4173:0:0:0,-35.2205,-375.328	0/1:133:72,60:72:2580:60:2147:-152.861,0,-192.297	0/1:55:24,31:24:852:31:1100:-82.4558,0,-60.4414	0/1:7:4,3:4:144:3:108:-7.95367,0,-11.2064	0/1:10:5,5:5:180:5:180:-13.5183,0,-13.5418	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:3:1,2:1:36:2:72:-5.91057,0,-2.69518	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3648	0/1:105:51,54:51:1832:54:1928:-141.961,0,-133.547	0/1:56:33,23:33:1161:23:803:-55.2731,0,-87.9089	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4695	.:.:.:.:.:.:.:.	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.758	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5245	0/1:56:30,26:30:1061:26:924:-65.5899,0,-78.9325	0/1:30:13,17:13:468:17:612:-46.2583,0,-33.4287	0/1:23:16,7:16:568:7:252:-16.0887,0,-44.5282	0/0:56:56,0:56:1984:0:0:0,-16.8577,-178.827	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.245	0/1:80:30,50:30:1076:50:1784:-136.004,0,-73.0505	0/1:33:22,11:22:780:11:396:-25.7516,0,-60.5755	0/0:93:93,0:93:3335:0:0:0,-27.9958,-300.357	0/1:47:25,22:25:892:22:776:-55.7458,0,-65.9579	0/1:10:8,2:8:288:2:72:-3.73316,0,-23.2571	0/1:52:25,27:25:896:27:968:-70.442,0,-65.0797	0/1:23:15,8:15:536:8:288:-19.2806,0,-41.6498	0/1:4:2,2:2:72:2:72:-5.61541,0,-5.6326	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.798	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3145	0/1:52:30,22:30:1063:22:792:-55.8399,0,-80.318	0/0:81:81,0:81:2900:0:0:0,-24.3834,-260.12	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1767	0/0:104:104,0:104:3709:0:0:0,-31.3071,-333.917	0/1:82:52,30:52:1868:30:1072:-72.0086,0,-143.636	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.767	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.794	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.752	0/0:99:99,0:99:3536:0:0:0,-29.802,-318.433	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.189	0/1:32:14,18:14:504:18:648:-48.903,0,-36.058	0/1:27:13,14:13:468:14:504:-37.5315,0,-34.3318	0/1:66:33,33:33:1176:33:1176:-85.8764,0,-86.2531	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.868	0/1:88:48,40:48:1724:40:1413:-100.189,0,-128.95	0/1:109:54,55:54:1896:55:1968:-144.014,0,-138.09	0/1:43:23,19:23:824:19:676:-47.9295,0,-61.497	0/0:65:63,2:63:2233:2:72:0,-12.7474,-194.401	0/1:13:8,5:8:288:5:180:-12.5914,0,-22.354	0/1:44:25,19:25:900:19:680:-47.9442,0,-68.0665	0/1:45:30,15:30:1068:15:536:-34.7826,0,-82.8694	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.771	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.94	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.65	0/1:20:12,8:12:428:8:284:-19.8652,0,-32.8382	0/1:47:16,31:16:567:31:1108:-85.4171,0,-37.2123	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4057	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.423	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.646	0/1:31:10,21:10:360:21:756:-58.9312,0,-23.4124	0/1:88:40,48:40:1428:48:1728:-127.901,0,-102.32	0/1:29:8,21:8:280:21:747:-58.1672,0,-16.8094	0/0:44:44,0:44:1552:0:0:0,-13.2453,-139.965	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863
chr04	32663967	.	AGTAA	GGTAC,GGTAA	223996	PASS	AB=0.516087,0.48087;ABP=13.3503,17.6328;AC=142,46;AF=0.755319,0.244681;AN=188;AO=8291,2228;CIGAR=1X3M1X,1X4M;DP=10548;DPB=10549.6;DPRA=0,1.0214;EPP=18006.7,4841.05;EPPR=5.18177;GTI=3;LEN=5,1;MEANALT=1.84043,2.31481;MQM=59.9461,59.6257;MQMR=60;NS=94;NUMALT=2;ODDS=0.403863;PAIRED=0,0;PAIREDR=0;PAO=7,0.5;PQA=226,0;PQR=0;PRO=0.5;QA=291492,79490;QR=36;RO=1;RPL=0,0;RPP=18006.7,4841.05;RPPR=5.18177;RPR=8291,2228;RUN=1,1;SAF=8291,2228;SAP=18006.7,4841.05;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:89:0,89,0:0:0:89,0:3096,0:-278.867,-26.7917,0,-278.867,-26.7917,-278.867	1/1:93:0,93,0:0:0:93,0:3293,0:-296.593,-27.9958,0,-296.593,-27.9958,-296.593	1/1:191:0,188,1:0:0:188,1:6542,36:-588.161,-56.5936,0,-585.223,-53.6529,-584.922	1/1:382:0,379,0:0:0:379,0:13361,0:-1201.2,-114.09,0,-1201.2,-114.09,-1201.2	1/2:91:0,48,43:0:0:48,43:1648,1540:-259.755,-125.949,-111.499,-134.157,0,-121.213	1/2:36:0,17,19:0:0:17,19:585,665:-101.962,-54.4532,-49.3357,-47.8553,0,-42.1357	1/2:144:0,79,65:0:0:79,65:2788,2332:-417.575,-190.55,-166.769,-227.381,0,-207.814	1/1:218:0,217,1:0:0:217,1:7642,36:-687.468,-65.3235,0,-684.531,-62.0263,-684.23	1/1:171:0,171,0:0:0:171,0:6004,0:-540.089,-51.4761,0,-540.089,-51.4761,-540.089	1/1:145:0,145,0:0:0:145,0:5075,0:-455.755,-43.6494,0,-455.755,-43.6494,-455.755	1/2:38:0,23,15:0:0:23,15:811,540:-110.423,-44.3926,-37.4689,-66.3868,0,-61.8713	1/1:85:0,85,0:0:0:85,0:2968,0:-267.354,-25.5876,0,-267.354,-25.5876,-267.354	1/1:73:0,73,0:0:0:73,0:2592,0:-233.529,-21.9752,0,-233.529,-21.9752,-233.529	1/1:54:0,54,0:0:0:54,0:1891,0:-170.304,-16.2556,0,-170.304,-16.2556,-170.304	1/1:83:0,83,0:0:0:83,0:2925,0:-263.485,-24.9855,0,-263.485,-24.9855,-263.485	1/1:62:0,62,0:0:0:62,0:2167,0:-195.298,-18.6639,0,-195.298,-18.6639,-195.298	1/2:38:0,25,13:0:0:25,13:885,468:-110.632,-38.5463,-31.0205,-72.4432,0,-68.5298	1/1:28:0,28,0:0:0:28,0:983,0:-88.7825,-8.42884,0,-88.7825,-8.42884,-88.7825	1/2:30:0,15,15:0:0:15,15:525,540:-87.1227,-44.4129,-39.8974,-43.0647,0,-38.5492	1/2:124:0,49,75:0:0:49,75:1702,2673:-356.589,-218.228,-203.477,-138.712,0,-116.135	1/2:236:0,96,138:0:0:96,138:3363,4894:-671.993,-398.355,-369.456,-273.63,0,-232.088	1/2:75:0,29,46:0:0:29,46:1013,1633:-215.804,-133.406,-124.676,-82.7492,0,-68.9018	1/1:195:0,195,0:0:0:195,0:6817,0:-613.389,-58.7009,0,-613.389,-58.7009,-613.389	1/2:54:0,48,6:0:0:48,6:1668,216:-153.576,-17.9797,-3.53021,-135.955,0,-134.148	1/2:61:0,34,27:0:0:34,27:1200,949:-175.305,-77.5856,-67.3506,-98.0713,0,-89.9435	1/1:401:0,401,0:0:0:401,0:14072,0:-1265.93,-120.713,0,-1265.93,-120.713,-1265.93	1/2:289:0,146,141:0:0:146,141:5133,5034:-828.053,-410.237,-366.287,-417.81,0,-375.365	1/1:39:0,39,0:0:0:39,0:1387,0:-125.129,-11.7402,0,-125.129,-11.7402,-125.129	1/1:410:0,407,2:0:0:407,2:14410,72:-1296.29,-122.519,0,-1290.41,-116.645,-1289.81	1/2:140:0,60,80:0:0:60,80:2109,2841:-403.499,-231.836,-213.774,-172.017,0,-147.934	1/2:161:0,94,67:0:0:94,67:3324,2389:-465.459,-194.73,-166.433,-270.725,0,-250.556	1/2:12:0,5,7:0:0:5,7:177,252:-35.3325,-20.9171,-19.4119,-14.7717,0,-12.6645	1/2:8:0,5,3:0:0:5,3:174,108:-23.3131,-9.17208,-7.66693,-14.4963,0,-13.5932	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:16:0,16,0:0:0:16,0:554,0:-50.0988,-4.81648,0,-50.0988,-4.81648,-50.0988	1/2:188:0,70,118:0:0:70,118:2468,4236:-546.837,-345.889,-324.817,-201.302,0,-165.781	1/2:143:0,81,62:0:0:81,62:2854,2212:-413.037,-180.677,-156.293,-232.715,0,-214.051	1/1:47:0,47,0:0:0:47,0:1642,0:-148.065,-14.1484,0,-148.065,-14.1484,-148.065	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:186:0,182,4:0:0:182,4:6404,144:-576.096,-54.7875,0,-564.346,-42.678,-563.142	1/1:33:0,33,0:0:0:33,0:1155,0:-104.256,-9.93399,0,-104.256,-9.93399,-104.256	1/2:167:0,108,59:0:0:108,59:3749,2119:-477.636,-172.884,-140.373,-305.106,0,-287.346	1/2:67:0,35,32:0:0:35,32:1210,1144:-191.942,-93.6272,-83.0911,-98.666,0,-89.0331	1/2:59:0,31,28:0:0:31,28:1099,1004:-171.772,-82.2401,-72.9081,-89.8883,0,-81.4594	1/1:215:0,215,0:0:0:215,0:7567,0:-681.086,-64.7215,0,-681.086,-64.7215,-681.086	1/1:129:0,129,0:0:0:129,0:4546,0:-409.315,-38.8329,0,-409.315,-38.8329,-409.315	1/2:235:0,127,108:0:0:127,108:4480,3834:-677.238,-312.448,-274.217,-365.144,0,-332.632	1/2:139:0,77,62:0:0:77,62:2724,2224:-403.608,-181.742,-158.563,-222.222,0,-203.558	1/1:156:0,156,0:0:0:156,0:5518,0:-496.751,-46.9607,0,-496.751,-46.9607,-496.751	1/2:69:0,33,36:0:0:33,36:1174,1262:-198.722,-103.04,-93.1065,-96.0342,0,-85.1971	1/2:8:0,3,5:0:0:3,5:105,180:-23.5862,-15.0469,-14.1438,-8.89288,0,-7.38773	1/2:114:0,63,51:0:0:63,51:2184,1805:-324.887,-147.377,-128.412,-177.86,0,-162.507	1/2:103:0,45,57:0:0:45,57:1561,2003:-289.995,-163.126,-149.58,-126.965,0,-109.806	1/2:13:0,10,3:0:0:10,3:359,108:-38.4558,-9.17208,-6.16178,-29.6433,0,-28.7402	1/1:158:0,158,0:0:0:158,0:5563,0:-500.405,-47.5627,0,-500.405,-47.5627,-500.405	1/1:78:0,78,0:0:0:78,0:2734,0:-246.304,-23.4803,0,-246.304,-23.4803,-246.304	1/1:28:0,28,0:0:0:28,0:989,0:-89.3238,-8.42884,0,-89.3238,-8.42884,-89.3238	1/1:21:0,21,0:0:0:21,0:743,0:-67.1937,-6.32163,0,-67.1937,-6.32163,-67.1937	1/2:90:0,48,41:0:0:48,41:1698,1464:-257.651,-119.349,-104.9,-138.297,0,-125.955	1/1:69:0,69,0:0:0:69,0:2438,0:-219.671,-20.7711,0,-219.671,-20.7711,-219.671	1/1:15:0,15,0:0:0:15,0:520,0:-47.1271,-4.51545,0,-47.1271,-4.51545,-47.1271	1/1:299:0,298,0:0:0:298,0:10501,0:-944.669,-89.7069,0,-944.669,-89.7069,-944.669	1/2:213:0,107,106:0:0:107,106:3755,3796:-615.428,-309.838,-277.628,-305.945,0,-274.035	1/1:102:0,96,5:0:0:96,5:3380,180:-304.06,-28.8989,0,-289.373,-14.2118,-287.868	1/1:134:0,132,0:0:0:132,0:4648,0:-418.153,-39.736,0,-418.153,-39.736,-418.153	1/1:243:0,241,0:0:0:241,0:8465,0:-761.51,-72.5482,0,-761.51,-72.5482,-761.51	1/1:152:0,151,1:0:0:151,1:5300,36:-476.786,-45.4555,0,-473.849,-42.1583,-473.548	1/1:16:0,16,0:0:0:16,0:563,0:-51.0002,-4.81648,0,-51.0002,-4.81648,-51.0002	1/1:48:0,48,0:0:0:48,0:1693,0:-152.655,-14.4494,0,-152.655,-14.4494,-152.655	1/2:38:0,20,18:0:0:20,18:710,648:-111.08,-53.2324,-47.2118,-58.2054,0,-52.7869	1/2:25:0,12,13:0:0:12,13:430,453:-72.2583,-37.1839,-33.5715,-35.4278,0,-31.5144	1/2:160:0,85,74:0:0:85,74:2973,2641:-457.154,-215.29,-189.703,-241.897,0,-219.621	1/1:103:0,102,1:0:0:102,1:3575,36:-321.602,-30.7051,0,-318.664,-27.4078,-318.363	1/2:201:0,113,87:0:0:113,87:3988,3105:-577.891,-253.148,-219.131,-324.778,0,-298.588	1/2:252:0,128,123:0:0:128,123:4486,4397:-723.533,-358.502,-319.97,-365.025,0,-327.998	1/2:112:0,63,49:0:0:63,49:2191,1760:-322.004,-143.867,-124.903,-178.491,0,-163.74	1/1:152:0,150,1:0:0:150,1:5283,36:-475.255,-45.1545,0,-472.326,-42.2257,-472.025	1/2:41:0,25,16:0:0:25,16:859,576:-117.095,-47.3503,-39.8246,-70.0977,0,-65.2812	1/2:119:0,62,57:0:0:62,57:2189,2040:-344.947,-166.69,-148.026,-178.612,0,-161.453	1/2:124:0,73,50:0:0:73,50:2572,1780:-354.476,-145.075,-123.1,-209.416,0,-194.364	1/1:293:0,293,0:0:0:293,0:10347,0:-931.17,-88.2018,0,-931.17,-88.2018,-931.17	1/1:63:0,63,0:0:0:63,0:2209,0:-199.076,-18.9649,0,-199.076,-18.9649,-199.076	1/1:63:0,63,0:0:0:63,0:2232,0:-201.144,-18.9649,0,-201.144,-18.9649,-201.144	1/2:72:0,43,29:0:0:43,29:1527,1044:-209.962,-85.5402,-72.596,-124.78,0,-116.05	1/2:143:0,68,75:0:0:68,75:2368,2688:-412.12,-219.565,-199.095,-192.908,0,-170.331	1/1:29:1,28,0:1:36:28,0:1000,0:-86.7175,-5.1316,0,-87.0186,-8.42884,-89.9561	1/1:86:0,86,0:0:0:86,0:2993,0:-269.411,-25.8886,0,-269.411,-25.8886,-269.411	1/1:68:0,68,0:0:0:68,0:2406,0:-216.797,-20.47,0,-216.797,-20.47,-216.797	1/2:22:0,13,8:0:0:13,8:458,284:-60.4224,-23.1358,-19.2225,-37.2814,0,-34.8732	1/2:59:0,29,29:0:0:29,29:1033,1029:-168.026,-83.8274,-75.0975,-84.2035,0,-75.4736	1/2:81:0,25,54:0:0:25,54:872,1932:-228.45,-157.532,-150.006,-70.9102,0,-54.6546	1/1:127:0,126,0:0:0:126,0:4430,0:-398.531,-37.9298,0,-398.531,-37.9298,-398.531	1/1:96:0,96,0:0:0:96,0:3400,0:-306.215,-28.8989,0,-306.215,-28.8989,-306.215
chr04	32664004	.	T	C	35023.6	PASS	AB=0.480837;ABP=17.4912;AC=46;AF=0.244681;AN=188;AO=2200;CIGAR=1X;DP=10411;DPB=10411;DPRA=1.02641;EPP=4762.89;EPPR=17804.8;GTI=4;LEN=1;MEANALT=1.01852;MQM=59.5895;MQMR=59.96;NS=94;NUMALT=1;ODDS=0.401301;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77161;QR=292940;RO=8210;RPL=2198;RPP=4762.89;RPPR=17804.8;RPR=2;RUN=1;SAF=2200;SAP=4780.25;SAR=0;SRF=8210;SRP=17830.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:85:85,0:85:3031:0:0:0,-25.5875,-273.014	0/0:92:92,0:92:3280:0:0:0,-27.6948,-295.418	0/0:186:185,1:185:6584:1:36:0,-52.3933,-588.555	0/0:378:378,0:378:13478:0:0:0,-113.789,-1212.44	0/1:87:50,37:50:1791:37:1293:-90.4791,0,-135.282	0/1:34:15,19:15:540:19:668:-50.2106,0,-38.7015	0/1:146:77,69:77:2760:69:2426:-174.621,0,-204.691	0/0:210:209,1:209:7465:1:36:0,-59.618,-668.296	0/0:166:166,0:166:5964:0:0:0,-49.971,-536.758	0/0:141:141,0:141:5017:0:0:0,-42.4452,-450.266	0/1:39:24,15:24:864:15:536:-36.8061,0,-66.3424	0/0:83:83,0:83:2947:0:0:0,-24.9855,-265.465	0/0:73:73,0:73:2599:0:0:0,-21.9752,-234.159	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.897	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.142	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.689	0/1:40:26,14:26:924:14:461:-29.7615,0,-71.4365	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:28:15,12:15:532:12:417:-29.3735,0,-39.7258	0/1:121:50,71:50:1783:71:2499:-188.733,0,-124.327	0/1:229:94,135:94:3376:135:4712:-355.141,0,-235.119	0/1:73:29,44:29:1029:44:1548:-117.627,0,-70.946	0/0:192:192,0:192:6836:0:0:0,-57.7978,-615.31	0/1:56:50,6:50:1779:6:216:-2.92816,0,-143.534	0/1:58:31,27:31:1099:27:952:-68.529,0,-81.7597	0/0:395:395,0:395:14097:0:0:0,-118.907,-1268.5	0/1:282:146,136:146:5180:136:4777:-345.044,0,-381.448	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:399:397,2:397:14194:2:72:0,-113.275,-1270.36	0/1:141:61,80:61:2162:80:2796:-209.421,0,-152.401	0/1:166:94,72:94:3367:72:2539:-178.785,0,-253.274	0/1:12:5,7:5:180:7:252:-19.4119,0,-12.9397	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0443	0/1:191:73,118:73:2582:118:4102:-311.858,0,-175.133	0/1:141:80,61:80:2826:61:2154:-151.677,0,-212.113	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:184:179,5:179:6403:5:180:0,-38.8421,-559.811	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:166:108,58:108:3800:58:2020:-131.965,0,-292.226	0/1:65:34,31:34:1199:31:1084:-78.2968,0,-88.6478	0/1:57:29,28:29:1035:28:950:-68.6368,0,-76.3039	0/0:213:213,0:213:7644:0:0:0,-64.1194,-687.993	0/0:129:128,1:128:4574:1:32:0,-35.6336,-408.626	0/1:230:128,102:128:4591:102:3499:-245.752,0,-344.116	0/1:139:78,61:78:2789:61:2151:-151.993,0,-209.361	0/0:155:155,0:155:5543:0:0:0,-46.6596,-498.995	0/1:69:32,37:32:1144:37:1316:-97.9689,0,-82.4984	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:111:63,48:63:2230:48:1683:-118.339,0,-167.549	0/1:96:42,54:42:1508:54:1928:-144.896,0,-107.116	0/1:14:11,3:11:387:3:108:-5.86075,0,-30.9515	0/0:154:154,0:154:5498:0:0:0,-46.3586,-494.947	0/0:77:77,0:77:2737:0:0:0,-23.1793,-246.572	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:91:49,42:49:1745:42:1437:-102.196,0,-129.939	0/0:72:72,0:72:2547:0:0:0,-21.6742,-229.434	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:296:296,0:296:10586:0:0:0,-89.1049,-952.653	0/1:212:108,104:108:3840:104:3665:-266.147,0,-281.978	0/0:100:95,5:95:3392:5:176:0,-13.918,-289.308	0/0:127:127,0:127:4479:0:0:0,-38.2308,-403.281	0/0:247:247,0:247:8842:0:0:0,-74.3544,-795.764	0/0:147:146,1:146:5240:1:36:0,-40.6531,-468.138	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/1:39:20,19:20:720:19:667:-48.6135,0,-53.3886	0/1:25:12,13:12:432:13:455:-33.7538,0,-31.6954	0/1:160:84,76:84:2984:76:2703:-194.874,0,-220.623	0/0:102:102,0:102:3623:0:0:0,-30.7051,-326.275	0/1:197:107,90:107:3828:90:3166:-223.636,0,-285.414	0/1:241:126,115:126:4500:115:4071:-294.02,0,-332.622	0/1:111:59,52:59:2108:52:1815:-130.151,0,-156.575	0/0:152:151,1:151:5398:1:34:0,-42.3634,-482.557	0/1:40:24,16:24:864:16:572:-39.764,0,-66.0414	0/1:114:60,54:60:2156:54:1928:-139.467,0,-159.99	0/1:119:71,48:71:2552:48:1679:-115.565,0,-194.107	0/0:292:292,0:292:10429:0:0:0,-87.9008,-938.53	0/0:66:66,0:66:2338:0:0:0,-19.868,-210.679	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/1:70:42,28:42:1484:28:987:-68.0686,0,-112.78	0/1:141:69,72:69:2472:72:2511:-183.772,0,-180.288	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:88:88,0:88:3109:0:0:0,-26.4906,-279.471	0/0:67:67,0:67:2358:0:0:0,-20.169,-212.476	0/1:23:13,10:13:468:10:329:-23.0049,0,-35.536	0/1:59:29,30:29:1035:30:1041:-76.2266,0,-75.7023	0/1:83:24,59:24:864:59:2086:-163.014,0,-53.0971	0/0:127:127,0:127:4524:0:0:0,-38.2308,-407.327	0/0:96:96,0:96:3456:0:0:0,-28.8989,-311.251
chr04	32664014	.	TATA	AATA,AATG	301255	PASS	AB=0.546946,0.448508;ABP=99.8552,119.521;AC=142,46;AF=0.755319,0.244681;AN=188;AO=9871,2290;CIGAR=1X3M,1X2M1X;DP=12210;DPB=12222.8;DPRA=0,1.08803;EPP=21437.6,4975.68;EPPR=5.18177;GTI=5;LEN=1,4;MEANALT=2.03191,2.44643;MQM=59.9639,59.5817;MQMR=60;NS=94;NUMALT=2;ODDS=4.97941;PAIRED=0,0;PAIREDR=0;PAO=1.5,49;PQA=36,1511;PQR=0;PRO=0.5;QA=352983,80447;QR=35;RO=1;RPL=8296,2290;RPP=9940.14,4975.68;RPPR=5.18177;RPR=1575,0;RUN=1,1;SAF=8296,2290;SAP=9940.14,4975.68;SAR=1575,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:88:0,85,0:0:0:85,0:3048,0:-274.225,-25.5876,0,-274.225,-25.5876,-274.225	1/1:93:0,93,0:0:0:93,0:3322,0:-299.198,-27.9958,0,-299.198,-27.9958,-299.198	1/1:194:0,191,1:0:0:191,1:6856,36:-616.815,-57.4967,0,-613.878,-54.5248,-613.577	1/1:383:0,383,0:0:0:383,0:13674,0:-1230.19,-115.294,0,-1230.19,-115.294,-1230.19	1/2:93:0,49,43:0:0:49,43:1756,1503:-265.491,-122.27,-107.52,-143.233,0,-130.289	1/2:37:0,17,20:0:0:17,20:604,709:-107.013,-57.7936,-52.6761,-49.2512,0,-43.2306	1/2:150:0,79,71:0:0:79,71:2813,2500:-432.785,-203.512,-179.73,-229.267,0,-207.894	1/1:221:0,218,1:0:0:218,1:7782,36:-700.091,-65.6245,0,-697.154,-62.6655,-696.853	1/1:170:0,169,0:0:0:169,0:6032,0:-542.585,-50.8741,0,-542.585,-50.8741,-542.585	1/1:145:0,144,0:0:0:144,0:5103,0:-458.908,-43.3483,0,-458.908,-43.3483,-458.908	1/2:40:0,25,15:0:0:25,15:896,531:-116.45,-43.3654,-35.8397,-73.2189,0,-68.7035	1/1:84:0,84,0:0:0:84,0:3008,0:-270.951,-25.2865,0,-270.951,-25.2865,-270.951	1/1:74:0,74,0:0:0:74,0:2656,0:-239.286,-22.2762,0,-239.286,-22.2762,-239.286	1/1:54:0,54,0:0:0:54,0:1940,0:-174.806,-16.2556,0,-174.806,-16.2556,-174.806	1/1:83:0,83,0:0:0:83,0:2971,0:-267.623,-24.9855,0,-267.623,-24.9855,-267.623	1/1:64:0,64,0:0:0:64,0:2296,0:-206.901,-19.2659,0,-206.901,-19.2659,-206.901	1/2:40:0,26,14:0:0:26,14:928,497:-116.506,-40.8502,-33.0234,-76.0115,0,-71.7971	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/2:30:0,15,14:0:0:15,14:540,501:-85.0213,-40.9554,-36.4399,-44.1643,0,-39.9499	1/2:123:0,48,75:0:0:48,75:1712,2615:-352.301,-212.736,-198.287,-139.631,0,-117.054	1/2:236:0,96,139:0:0:96,139:3437,4864:-675.974,-395.686,-366.787,-280.352,0,-238.509	1/2:112:0,66,45:0:0:66,45:2360,1595:-322.438,-130.002,-110.134,-192.5,0,-178.953	1/1:195:0,194,0:0:0:194,0:6947,0:-625.007,-58.3998,0,-625.007,-58.3998,-625.007	1/2:55:0,49,6:0:0:49,6:1733,216:-159.123,-17.9797,-3.22918,-141.502,0,-139.696	1/2:62:0,34,28:0:0:34,28:1203,965:-176.462,-78.468,-68.233,-98.0835,0,-89.6547	1/1:754:0,753,0:0:0:753,0:26961,0:-2425.35,-226.676,0,-2425.35,-226.676,-2425.35	1/2:288:0,144,142:0:0:144,142:5148,5036:-829.909,-410.152,-366.803,-419.769,0,-377.022	1/1:39:0,38,0:0:0:38,0:1368,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/1:718:0,716,2:0:0:716,2:25571,71:-2300.3,-215.537,0,-2294.51,-209.398,-2293.91	1/2:145:0,63,82:0:0:63,82:2237,2907:-419.444,-237.171,-218.206,-182.627,0,-157.943	1/2:171:0,95,75:0:0:95,75:3400,2613:-489.761,-212.496,-183.898,-277.277,0,-254.7	1/2:12:0,5,7:0:0:5,7:180,250:-35.4232,-20.7349,-19.2297,-15.0469,0,-12.9397	1/2:8:0,5,3:0:0:5,3:180,102:-23.3128,-8.61329,-7.10814,-15.0469,0,-14.1438	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:4:0,3,1:0:0:3,1:108,35:-12.0173,-3.1976,-2.29451,-9.17208,0,-8.87105	1/1:16:0,16,0:0:0:16,0:576,0:-52.0684,-4.81648,0,-52.0684,-4.81648,-52.0684	1/2:343:0,220,121:0:0:220,121:7857,4242:-985.791,-345.212,-278.986,-640.611,0,-604.186	1/2:144:0,81,63:0:0:81,63:2888,2217:-415.778,-180.466,-156.083,-235.306,0,-216.341	1/1:46:0,46,0:0:0:46,0:1636,0:-147.528,-13.8474,0,-147.528,-13.8474,-147.528	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:188:0,181,5:0:0:181,5:6488,173:-583.659,-54.4864,0,-569.602,-40.4248,-568.097	1/1:33:0,31,1:0:0:31,1:1112,36:-100.083,-9.33193,0,-97.1456,-6.33959,-96.8446	1/2:170:0,109,61:0:0:109,61:3895,2118:-490.051,-172.472,-139.659,-317.93,0,-299.567	1/2:69:0,36,32:0:0:36,32:1278,1125:-195.711,-91.5791,-80.742,-104.143,0,-94.5103	1/2:60:0,32,27:0:0:32,27:1152,959:-172.273,-78.2708,-68.6378,-94.1326,0,-86.0048	1/1:421:0,421,0:0:0:421,0:15107,0:-1359.35,-126.734,0,-1359.35,-126.734,-1359.35	1/1:130:0,129,1:0:0:129,1:4640,36:-417.4,-38.8329,0,-414.463,-35.5356,-414.162	1/2:235:0,127,107:0:0:127,107:4535,3774:-676.923,-307.191,-268.96,-369.753,0,-337.543	1/2:140:0,73,66:0:0:73,66:2616,2313:-401.596,-188.237,-166.262,-213.401,0,-193.533	1/1:155:0,154,0:0:0:154,0:5532,0:-497.643,-46.3586,0,-497.643,-46.3586,-497.643	1/2:150:0,112,38:0:0:112,38:4008,1331:-435.491,-108.649,-74.9333,-327.194,0,-315.755	1/2:10:0,5,5:0:0:5,5:180,175:-29.2803,-14.5882,-13.083,-15.0469,0,-13.5418	1/2:117:0,64,53:0:0:64,53:2287,1863:-338.106,-151.634,-132.368,-186.466,0,-170.512	1/2:191:0,132,59:0:0:132,59:4721,2079:-554.574,-169.618,-129.882,-385.31,0,-367.55	1/2:14:0,11,3:0:0:11,3:396,108:-41.4837,-9.17208,-5.86075,-32.6714,0,-31.7683	1/1:158:0,158,0:0:0:158,0:5650,0:-508.304,-47.5627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chr04	32706896	.	T	A	41303.9	PASS	AB=0.500406;ABP=3.01735;AC=45;AF=0.239362;AN=188;AO=2482;CIGAR=1X;DP=10258;DPB=10258;DPRA=1.14916;EPP=5392.6;EPPR=16868.8;GTI=0;LEN=1;MEANALT=1.13462;MQM=54.0246;MQMR=59.5859;NS=94;NUMALT=1;ODDS=5.69814;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88645;QR=276663;RO=7767;RPL=2482;RPP=5392.6;RPPR=16868.8;RPR=0;RUN=1;SAF=2482;SAP=5392.6;SAR=0;SRF=7767;SRP=16868.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.394	0/0:59:59,0:59:2098:0:0:0,-17.7608,-189.051	0/0:145:145,0:145:5141:0:0:0,-43.6493,-462.12	0/0:212:212,0:212:7557:0:0:0,-63.8184,-680.082	0/1:58:34,24:34:1211:24:846:-58.8556,0,-91.8189	0/1:27:12,15:12:423:15:540:-40.6714,0,-30.269	0/1:77:27,50:27:964:50:1788:-137.827,0,-63.8975	0/0:198:198,0:198:7039:0:0:0,-59.6039,-631.957	0/0:151:151,0:151:5341:0:0:0,-45.4555,-480.738	0/0:89:89,0:89:3168:0:0:0,-26.7917,-285.341	0/1:84:36,48:36:1296:48:1715:-128.876,0,-91.648	0/0:131:131,0:131:4673:0:0:0,-39.4349,-420.454	0/0:137:136,0:136:4875:0:0:0,-40.9401,-438.427	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.135	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.21	0/0:119:119,0:119:4224:0:0:0,-35.8226,-379.295	0/1:51:28,22:28:1000:22:784:-55.2701,0,-74.8887	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.749	0/1:70:35,35:35:1256:35:1256:-91.0415,0,-92.2487	0/1:154:98,56:98:3481:56:1986:-132.257,0,-267.115	0/1:177:90,87:90:3236:87:3081:-222.338,0,-238.147	0/1:145:53,92:53:1886:92:3292:-252.519,0,-125.821	0/0:140:140,0:140:4988:0:0:0,-42.1442,-449.043	0/0:114:113,1:113:4031:1:36:0,-30.7242,-359.319	0/1:134:81,52:81:2891:52:1844:-125.287,0,-220.007	0/0:320:320,0:320:11398:0:0:0,-96.3296,-1025.52	0/1:260:108,152:108:3855:152:5436:-409.357,0,-268.849	0/0:43:43,0:43:1527:0:0:0,-12.9443,-137.718	0/0:214:214,0:214:7628:0:0:0,-64.4204,-685.895	0/1:93:59,34:59:2103:34:1224:-82.311,0,-161.375	0/1:107:53,53:53:1876:53:1899:-138.547,0,-136.926	0/1:14:10,4:10:356:4:144:-9.08032,0,-28.1603	0/1:52:30,22:30:1050:22:777:-54.483,0,-79.1522	0/1:10:5,5:5:180:5:176:-12.5007,0,-13.5334	0/1:18:9,9:9:311:9:324:-23.8294,0,-22.9041	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7399	0/1:295:162,132:162:5792:132:4709:-333.91,0,-432.442	0/1:161:75,86:75:2656:86:3049:-225.377,0,-190.815	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.364	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:104:101,3:101:3580:3:108:0,-21.2462,-312.313	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.005	0/1:221:120,101:120:4273:101:3611:-256.439,0,-318.207	0/1:79:44,35:44:1549:35:1247:-88.327,0,-115.9	0/1:72:36,36:36:1275:36:1287:-94.2062,0,-93.3605	0/0:153:153,0:153:5431:0:0:0,-46.0576,-488.837	0/0:110:110,0:110:3918:0:0:0,-33.1133,-352.69	0/1:146:59,87:59:2103:87:3112:-235.874,0,-145.581	0/1:117:59,58:59:2103:58:2088:-152.763,0,-154.307	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.612	0/1:187:81,106:81:2903:106:3795:-284.971,0,-205.202	0/1:18:11,7:11:387:7:252:-17.5088,0,-29.7471	0/1:158:83,75:83:2975:75:2688:-193.699,0,-220.205	0/1:64:36,28:36:1279:28:1008:-71.7436,0,-96.1465	0/1:37:16,21:16:576:21:744:-55.7855,0,-41.0369	0/0:174:174,0:174:6175:0:0:0,-52.3792,-555.785	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.681	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.0947	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1931	0/1:130:69,61:69:2459:61:2163:-154.431,0,-182.334	0/0:141:139,2:139:4941:2:72:0,-35.6134,-437.958	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4573	0/0:139:139,0:139:4967:0:0:0,-41.8432,-447.09	0/1:220:117,102:117:4164:102:3647:-261.654,0,-308.641	0/0:90:85,5:85:3026:5:169:0,-11.5822,-257.037	0/0:61:61,0:61:2170:0:0:0,-18.3628,-195.561	0/0:175:174,1:174:6155:1:36:0,-49.0846,-550.325	0/0:237:233,4:233:8297:4:140:0,-58.41,-733.793	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.813	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.424	0/1:91:38,53:38:1351:53:1900:-143.682,0,-94.4959	0/1:32:13,19:13:464:19:684:-52.1286,0,-32.4645	0/1:223:109,114:109:3904:114:4079:-298.067,0,-284.314	0/0:82:82,0:82:2916:0:0:0,-24.6845,-262.654	0/1:101:54,47:54:1900:47:1655:-118.167,0,-140.852	0/1:140:63,76:63:2232:76:2715:-201.619,0,-158.93	0/1:117:56,61:56:1989:61:2184:-160.919,0,-144.046	0/0:89:89,0:89:3180:0:0:0,-26.7917,-285.616	0/1:27:8,19:8:288:19:672:-52.1731,0,-18.0524	0/1:63:33,30:33:1184:30:1076:-77.529,0,-87.9034	0/1:95:65,30:65:2297:30:1071:-67.2856,0,-178.382	0/0:237:236,1:236:8402:1:36:0,-67.7484,-752.509	0/0:126:126,0:126:4492:0:0:0,-37.9298,-404.437	0/0:83:83,0:83:2967:0:0:0,-24.9855,-267.253	0/1:59:30,29:30:1076:29:1036:-75.7107,0,-79.3921	0/1:207:109,98:109:3904:98:3518:-253.49,0,-288.443	0/0:32:31,0:31:1108:0:0:0,-9.33193,-99.6558	0/0:103:103,0:103:3683:0:0:0,-31.0061,-331.615	0/0:79:79,0:79:2814:0:0:0,-23.7814,-253.467	0/1:56:31,25:31:1116:25:900:-64.3123,0,-83.894	0/1:179:81,98:81:2847:98:3503:-260.939,0,-202.557	0/1:100:28,71:28:995:71:2543:-197.448,0,-59.6993	0/0:89:89,0:89:3157:0:0:0,-26.7917,-284.35	0/0:128:128,0:128:4587:0:0:0,-38.5318,-412.973
chr04	32706957	.	AGG	AGA,TGA	240311	PASS	AB=0.484209,0.511752;ABP=14.8063,9.54306;AC=142,46;AF=0.755319,0.244681;AN=188;AO=8533,2814;CIGAR=2M1X,1X1M1X;DP=11389;DPB=11390.3;DPRA=61.2204,1.16803;EPP=18532.2,6113.53;EPPR=9.52472;GTI=1;LEN=1,3;MEANALT=1.98925,2.41379;MQM=59.5946,53.662;MQMR=60;NS=94;NUMALT=2;ODDS=2.56614;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=2;QA=303843,96900;QR=103;RO=3;RPL=0,0;RPP=18532.2,6113.53;RPPR=9.52472;RPR=8533,2814;RUN=1,1;SAF=0,0;SAP=18532.2,6113.53;SAR=8533,2814;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41,0:0:0:41,0:1468,0:-132.416,-12.3422,0,-132.416,-12.3422,-132.416	1/1:202:0,200,0:0:0:200,0:7109,0:-639.419,-60.206,0,-639.419,-60.206,-639.419	1/1:139:0,139,0:0:0:139,0:4947,0:-445.319,-41.8432,0,-445.319,-41.8432,-445.319	1/1:226:0,224,0:0:0:224,0:7936,0:-712.845,-67.4307,0,-712.845,-67.4307,-712.845	1/2:69:0,39,30:0:0:39,30:1400,1045:-199.411,-85.2087,-73.4685,-114.554,0,-105.524	1/2:90:0,45,44:0:0:45,44:1607,1538:-255.689,-124.887,-111.341,-130.798,0,-117.553	1/2:124:0,66,58:0:0:66,58:2363,1950:-350.348,-157.664,-137.796,-193.03,0,-175.57	1/1:164:0,164,0:0:0:164,0:5851,0:-526.429,-49.3689,0,-526.429,-49.3689,-526.429	1/1:119:0,118,1:0:0:118,1:4201,23:-378.024,-35.5215,0,-376.257,-33.5228,-375.956	1/1:149:0,149,0:0:0:149,0:5284,0:-475.687,-44.8535,0,-475.687,-44.8535,-475.687	1/2:57:0,27,30:0:0:27,30:960,1019:-161.016,-82.7824,-74.6546,-78.5815,0,-69.5506	1/1:83:0,83,0:0:0:83,0:2932,0:-264.09,-24.9855,0,-264.09,-24.9855,-264.09	1/1:93:0,93,0:0:0:93,0:3323,0:-299.255,-27.9958,0,-299.255,-27.9958,-299.255	1/1:86:0,86,0:0:0:86,0:3048,0:-274.517,-25.8886,0,-274.517,-25.8886,-274.517	1/1:80:0,80,0:0:0:80,0:2854,0:-256.959,-24.0824,0,-256.959,-24.0824,-256.959	1/1:62:0,62,0:0:0:62,0:2219,0:-199.959,-18.6639,0,-199.959,-18.6639,-199.959	1/2:98:0,43,55:0:0:43,55:1530,1884:-277.514,-152.841,-139.897,-125.022,0,-108.465	1/1:59:0,58,1:0:0:58,1:2061,34:-185.411,-17.4597,0,-182.656,-14.3642,-182.355	1/2:35:0,17,18:0:0:17,18:612,619:-100.406,-50.4626,-45.3451,-50.295,0,-44.8765	1/2:293:0,150,141:0:0:150,141:5349,4831:-827.287,-391.306,-346.151,-435.972,0,-393.527	1/2:131:0,63,67:0:0:63,67:2252,2313:-371.203,-187.589,-168.624,-183.733,0,-163.564	1/2:164:0,54,109:0:0:54,109:1911,3774:-461.041,-305.383,-289.127,-155.67,0,-122.858	1/1:128:0,128,0:0:0:128,0:4568,0:-411.271,-38.5318,0,-411.271,-38.5318,-411.271	1/1:149:0,145,4:0:0:145,4:5176,144:-465.042,-43.6494,0,-453.31,-31.5587,-452.106	1/2:88:0,45,42:0:0:45,42:1620,1460:-250.565,-118.4,-104.853,-132.303,0,-119.66	1/1:408:0,406,0:0:0:406,0:14461,0:-1300.51,-122.218,0,-1300.51,-122.218,-1300.51	1/2:164:0,95,69:0:0:95,69:3332,2352:-461.507,-190.633,-162.036,-271.218,0,-250.447	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7925,-9.0309,0,-96.7925,-9.0309,-96.7925	1/1:311:0,308,3:0:0:308,3:10978,79:-987.284,-92.7172,0,-981.211,-86.3851,-980.308	1/2:245:0,120,125:0:0:120,125:4279,4352:-702.209,-353.434,-317.31,-349.127,0,-311.498	1/2:205:0,96,107:0:0:96,107:3399,3669:-572.439,-295.657,-266.758,-276.887,0,-244.677	1/2:10:0,2,8:0:0:2,8:68,275:-28.0352,-22.5197,-21.9177,-5.85565,0,-3.44741	1/2:4:0,3,1:0:0:3,1:108,36:-12.1048,-3.29214,-2.38905,-9.17208,0,-8.87105	1/2:4:0,2,2:0:0:2,2:72,72:-11.5997,-6.22762,-5.62556,-5.71811,0,-5.11605	1/2:3:0,2,1:0:0:2,1:72,34:-8.98382,-3.09554,-2.49348,-6.23466,0,-5.93363	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:249:1,126,122:1:36:126,122:4466,4226:-703.273,-339.936,-304.943,-360.691,0,-326.903	1/2:279:0,150,129:0:0:150,129:5378,4397:-794.706,-356.091,-310.936,-438.963,0,-400.13	1/1:50:0,49,1:0:0:49,1:1760,33:-158.337,-14.7505,0,-155.673,-11.7558,-155.372	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:171:0,167,4:0:0:167,4:5955,125:-535.694,-50.272,0,-525.661,-39.926,-524.457	1/1:34:0,34,0:0:0:34,0:1198,0:-108.111,-10.235,0,-108.111,-10.235,-108.111	1/2:204:0,103,101:0:0:103,101:3680,3494:-583.61,-283.564,-252.558,-300.398,0,-269.994	1/2:102:0,57,44:0:0:57,44:2022,1537:-289.282,-124.541,-107.382,-164.736,0,-151.491	1/2:95:0,41,51:0:0:41,51:1445,1752:-259.72,-142.071,-129.729,-117.736,0,-102.384	1/1:136:0,135,1:0:0:135,1:4790,27:-430.966,-40.6391,0,-428.856,-38.2613,-428.555	1/1:172:0,171,1:0:0:171,1:6098,21:-548.622,-51.4761,0,-547.034,-49.6774,-546.733	1/2:249:0,93,156:0:0:93,156:3302,5419:-707.614,-439.065,-411.07,-268.9,0,-221.939	1/2:158:0,82,76:0:0:82,76:2918,2599:-447.98,-210.165,-185.481,-238.162,0,-215.284	1/1:247:0,246,0:0:0:246,0:8754,0:-785.902,-74.0534,0,-785.902,-74.0534,-785.902	1/2:200:0,88,112:0:0:88,112:3124,3858:-567.196,-312.658,-286.167,-254.888,0,-221.172	2/2:2:0,0,2:0:0:0,2:0,70:-6.63941,-6.63941,-6.63941,-0.60206,-0.60206,0	1/2:160:0,73,87:0:0:73,87:2616,2990:-456.175,-242.839,-220.864,-213.688,0,-187.498	1/2:61:0,27,34:0:0:27,34:964,1192:-175.239,-96.6474,-88.5196,-78.9445,0,-68.7094	1/2:10:0,5,5:0:0:5,5:172,169:-27.9966,-14.0246,-12.5194,-14.3128,0,-12.8077	1/1:163:0,162,0:0:0:162,0:5759,0:-518.093,-48.7669,0,-518.09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chr04	32706984	.	T	C	230561	PASS	AB=0.486813;ABP=11.2571;AC=142;AF=0.755319;AN=188;AO=8580;CIGAR=1X;DP=11409;DPB=11409;DPRA=61.328;EPP=127.022;EPPR=4.78318;GTI=1;LEN=1;MEANALT=1.07527;MQM=59.5584;MQMR=53.9181;NS=94;NUMALT=1;ODDS=2.63222;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=304879;QR=100830;RO=2822;RPL=4640;RPP=127.022;RPPR=4.78318;RPR=3940;RUN=1;SAF=0;SAP=18634.2;SAR=8580;SRF=0;SRP=6130.91;SRR=2822;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1488:-134.215,-12.6433,0	1/1:202:0,202:0:0:202:7161:-644.288,-60.8081,0	1/1:138:0,138:0:0:138:4913:-442.268,-41.5421,0	1/1:235:0,234:0:0:234:8303:-746.686,-70.441,0	0/1:70:31,39:31:1112:39:1387:-104.051,0,-79.1868	0/1:88:45,43:45:1612:43:1544:-112.537,0,-118.621	0/1:122:56,66:56:1984:66:2329:-173.115,0,-141.159	1/1:167:0,167:0:0:167:5942:-534.49,-50.272,0	1/1:118:1,117:1:36:117:4150:-370.067,-31.927,0	1/1:151:0,151:0:0:151:5366:-482.963,-45.4555,0	0/1:58:31,27:31:1099:27:972:-70.3312,0,-81.3206	1/1:83:0,83:0:0:83:2912:-262.259,-24.9855,0	1/1:93:0,93:0:0:93:3304:-297.498,-27.9958,0	1/1:83:0,83:0:0:83:2956:-266.244,-24.9855,0	1/1:83:0,83:0:0:83:2951:-265.497,-24.9855,0	1/1:66:0,66:0:0:66:2319:-208.936,-19.868,0	0/1:96:51,45:51:1811:45:1577:-113.294,0,-133.807	1/1:59:1,58:1:36:58:2071:-183.057,-14.1662,0	0/1:34:17,17:17:608:17:608:-44.8161,0,-44.6588	0/1:294:141,153:141:5035:153:5486:-405.28,0,-363.616	0/1:132:69,63:69:2468:63:2243:-162.388,0,-182.179	0/1:160:108,52:108:3826:52:1820:-115.914,0,-295	1/1:128:0,128:0:0:128:4578:-412.173,-38.5318,0	1/1:146:4,142:4:144:142:5062:-442.401,-30.6556,0	0/1:88:42,46:42:1508:46:1608:-118.491,0,-109.055	1/1:408:0,408:0:0:408:14523:-1306.3,-122.82,0	0/1:165:67,98:67:2362:98:3487:-264.053,0,-162.264	1/1:29:0,29:0:0:29:1031:-93.1026,-8.72987,0	1/1:309:0,308:0:0:308:10954:-984.869,-92.7172,0	0/1:249:129,120:129:4606:120:4260:-308.351,0,-338.562	0/1:202:103,99:103:3682:99:3493:-253.747,0,-268.663	0/1:10:8,2:8:284:2:68:-3.44741,0,-22.7321	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.38905	0/1:4:2,2:2:72:2:72:-5.11605,0,-5.62556	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99251	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:246:119,126:119:4268:126:4496:-330.516,0,-309.742	0/1:276:129,147:129:4620:147:5228:-387.506,0,-330.945	1/1:52:0,52:0:0:52:1860:-167.657,-15.6536,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:174:4,170:4:144:170:6064:-532.529,-39.0845,0	1/1:30:0,30:0:0:30:1080:-97.4956,-9.0309,0	0/1:209:103,106:103:3696:106:3783:-276.977,0,-268.987	0/1:99:44,55:44:1580:55:1972:-147.953,0,-112.164	0/1:94:53,41:53:1871:41:1439:-101.253,0,-139.918	1/1:138:1,137:1:36:137:4850:-432.867,-37.9439,0	1/1:175:0,175:0:0:175:6229:-560.622,-52.6803,0	0/1:245:150,94:150:5368:94:3312:-224.489,0,-407.7	0/1:156:74,82:74:2636:82:2915:-215.617,0,-189.768	1/1:242:0,242:0:0:242:8612:-774.552,-72.8493,0	0/1:200:114,86:114:4088:86:3076:-216.86,0,-306.474	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/1:163:87,75:87:3108:75:2682:-192.475,0,-230.295	0/1:61:34,27:34:1220:27:968:-69.0705,0,-91.0273	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5247	1/1:158:1,157:1:36:157:5600:-500.477,-43.9645,0	1/1:61:0,61:0:0:61:2163:-194.914,-18.3628,0	1/1:5:0,5:0:0:5:171:-15.7235,-1.50515,0	1/1:20:0,20:0:0:20:705:-63.5427,-6.0206,0	0/1:91:61,30:61:2171:30:1070:-69.2125,0,-167.64	1/1:137:0,137:0:0:137:4888:-440.06,-41.2411,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:320:1,318:1:36:318:11338:-1016.66,-92.7901,0	0/1:177:82,95:82:2928:95:3384:-251.481,0,-209.666	1/1:119:5,114:5:176:114:4036:-346.769,-19.6563,0	1/1:87:0,87:0:0:87:3074:-276.863,-26.1896,0	1/1:221:1,220:1:36:220:7796:-697.986,-62.9345,0	1/1:155:0,155:0:0:155:5526:-497.448,-46.6597,0	1/1:21:0,21:0:0:21:748:-67.6434,-6.32163,0	1/1:91:0,91:0:0:91:3238:-291.299,-27.3937,0	0/1:104:56,48:56:2004:48:1720:-123.777,0,-148.858	0/1:22:8,14:8:284:14:504:-39.0754,0,-19.2462	0/1:146:68,78:68:2423:78:2784:-206.574,0,-173.914	1/1:78:0,78:0:0:78:2784:-250.731,-23.4803,0	0/1:224:122,102:122:4384:102:3588:-255.303,0,-326.013	0/1:171:70,101:70:2503:101:3596:-272.299,0,-173.612	0/1:153:83,70:83:2964:70:2488:-178.116,0,-220.318	1/1:139:0,139:0:0:139:4926:-443.21,-41.8432,0	0/1:10:3,7:3:108:7:252:-20.0104,0,-7.05449	0/1:118:51,67:51:1824:67:2404:-180.465,0,-128.477	0/1:129:70,59:70:2508:59:2099:-150.316,0,-186.885	1/1:280:0,279:0:0:279:9943:-894.289,-83.9874,0	1/1:127:0,127:0:0:127:4497:-404.869,-38.2308,0	1/1:80:1,79:1:36:79:2808:-248.987,-20.4841,0	0/1:146:75,71:75:2687:71:2498:-181.107,0,-197.558	0/1:189:85,104:85:3039:104:3720:-276.988,0,-215.897	1/1:52:0,52:0:0:52:1851:-166.853,-15.6536,0	1/1:102:0,102:0:0:102:3574:-321.838,-30.7051,0	1/1:77:0,77:0:0:77:2697:-242.923,-23.1793,0	0/1:41:24,17:24:860:17:595:-41.5345,0,-65.2632	0/1:96:54,42:54:1915:42:1463:-103.06,0,-143.072	0/1:106:73,33:73:2628:33:1176:-74.2362,0,-203.956	1/1:122:1,121:1:36:121:4277:-381.496,-33.1274,0	1/1:134:0,134:0:0:134:4732:-426.015,-40.338,0
chr04	32718636	.	A	C	105641	PASS	AB=0.46156;ABP=49.0866;AC=144;AF=0.765957;AN=188;AO=5029;CIGAR=1X;DP=6984;DPB=6984;DPRA=0;EPP=10802.1;EPPR=4191.85;GTI=2;LEN=1;MEANALT=1.08511;MQM=59.9636;MQMR=59.9969;NS=94;NUMALT=1;ODDS=0.224804;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180077;QR=66251;RO=1945;RPL=14;RPP=10802.1;RPPR=4200.51;RPR=5015;RUN=1;SAF=5029;SAP=10923.3;SAR=0;SRF=1944;SRP=4217.84;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1308:-118.02,-11.1381,0	1/1:88:1,87:1:21:87:3104:-277.488,-24.3907,0	1/1:129:0,129:0:0:129:4598:-413.986,-38.8329,0	1/1:102:0,102:0:0:102:3656:-329.244,-30.7051,0	0/1:61:34,26:34:1125:26:921:-64.7838,0,-83.1203	0/1:33:18,15:18:644:15:532:-38.2791,0,-48.3566	0/1:154:97,57:97:3366:57:2052:-138.593,0,-256.795	1/1:103:3,100:3:108:100:3568:-311.254,-20.9309,0	1/1:58:0,58:0:0:58:2068:-185.963,-17.4597,0	1/1:71:0,71:0:0:71:2548:-229.568,-21.3731,0	0/1:54:27,26:27:948:26:932:-67.8845,0,-69.3205	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:49:0,49:0:0:49:1737:-156.614,-14.7505,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:74:40,34:40:1340:34:1224:-88.1908,0,-98.6119	1/1:50:0,50:0:0:50:1787:-161.112,-15.0515,0	0/1:47:25,20:25:764:20:720:-51.2226,0,-55.1403	0/1:193:89,104:89:3107:104:3716:-276.543,0,-221.759	0/1:160:93,67:93:3177:67:2396:-167.485,0,-237.984	0/1:56:41,15:41:1445:15:525:-30.7204,0,-113.486	1/1:50:0,50:0:0:50:1788:-161.2,-15.0515,0	1/1:93:2,91:2:72:91:3268:-287.498,-21.1591,0	0/1:59:30,29:30:1053:29:1044:-76.514,0,-77.3178	1/1:133:0,133:0:0:133:4780:-430.354,-40.037,0	0/1:163:76,86:76:2568:86:3076:-227.942,0,-182.237	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:214:0,214:0:0:214:7671:-690.395,-64.4204,0	0/1:81:38,43:38:1269:43:1532:-113.789,0,-90.1145	0/1:105:61,44:61:2108:44:1580:-110.883,0,-158.375	0/1:4:3,1:3:93:1:36:-2.39415,0,-7.47261	0/1:14:10,4:10:352:4:144:-9.0992,0,-27.8038	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:5,3:5:172:3:108:-7.66693,0,-13.4097	1/1:15:0,15:0:0:15:532:-48.2085,-4.51545,0	0/1:150:78,71:78:2716:71:2536:-183.278,0,-199.467	0/1:114:55,59:55:1859:59:2120:-156.751,0,-133.255	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:74:5,69:5:150:69:2451:-207.049,-8.48108,0	1/1:43:0,42:0:0:42:1508:-135.655,-12.6433,0	0/1:125:58,67:58:1897:67:2388:-177.549,0,-133.362	0/1:72:45,27:45:1593:27:972:-66.1237,0,-121.984	0/1:57:26,31:26:864:31:1116:-83.593,0,-60.9019	1/1:72:1,71:1:36:71:2552:-226.332,-18.0759,0	1/1:65:0,65:0:0:65:2322:-209.24,-19.567,0	0/1:82:42,40:42:1365:40:1436:-104.853,0,-98.4415	0/1:74:37,37:37:1230:37:1312:-96.0752,0,-88.7105	1/1:121:0,121:0:0:121:4340:-390.774,-36.4246,0	0/1:147:80,67:80:2841:67:2404:-171.923,0,-211.676	0/1:5:4,1:4:125:1:36:-2.09312,0,-10.0535	0/1:121:78,43:78:2592:43:1540:-102.468,0,-197.093	0/1:40:26,14:26:909:14:504:-33.6569,0,-70.0822	0/1:18:10,8:10:341:8:284:-20.4848,0,-25.5992	1/1:126:2,124:2:72:124:4434:-392.395,-31.0931,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:64:38,26:38:1292:26:936:-65.2935,0,-97.3047	1/1:92:2,90:2:72:90:3228:-283.905,-20.858,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:84:1,83:1:36:83:2964:-263.395,-21.6882,0	0/1:134:60,74:60:2094:74:2652:-198.588,0,-148.389	1/1:53:1,52:1:32:52:1868:-165.2,-12.7553,0	1/1:53:0,53:0:0:53:1884:-169.839,-15.9546,0	1/1:121:1,120:1:36:120:4320:-385.375,-32.8264,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:95:1,94:1:36:94:3368:-299.736,-24.9996,0	0/1:65:36,29:36:1213:29:1044:-74.7079,0,-89.8933	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:83:52,31:52:1777:31:1112:-75.4055,0,-135.218	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:132:83,49:83:2839:49:1752:-118.228,0,-216.008	0/1:158:75,83:75:2615:83:2980:-220.869,0,-188.033	0/1:51:25,26:25:783:26:928:-68.4857,0,-55.4051	1/1:81:0,81:0:0:81:2893:-260.605,-24.3834,0	0/1:15:4,11:4:125:11:396:-31.4673,0,-7.04317	0/1:107:49,58:49:1628:58:2088:-155.966,0,-114.582	0/1:112:51,61:51:1688:61:2173:-162.119,0,-118.475	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	1/1:49:1,48:1:36:48:1708:-150.408,-11.1522,0	0/1:76:44,32:44:1534:32:1152:-81.1119,0,-115.47	0/1:95:46,49:46:1640:49:1752:-129.366,0,-119.291	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:63:38,25:38:1250:25:888:-61.2741,0,-93.8205	0/1:80:43,35:43:1426:35:1260:-89.8653,0,-104.782	0/1:74:48,25:48:1565:25:900:-58.986,0,-118.787	1/1:141:0,141:0:0:141:5055:-455.091,-42.4452,0	1/1:85:0,85:0:0:85:3042:-274.01,-25.5876,0
chr04	32718669	.	A	G	146405	PASS	AB=0.437542;ABP=155.183;AC=144;AF=0.765957;AN=188;AO=5976;CIGAR=1X;DP=8522;DPB=8522;DPRA=0;EPP=12953.7;EPPR=5512.05;GTI=4;LEN=1;MEANALT=1.01064;MQM=59.9769;MQMR=59.9925;NS=94;NUMALT=1;ODDS=3.05476;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212625;QR=91018;RO=2545;RPL=4958;RPP=5643.75;RPPR=1859.32;RPR=1018;RUN=1;SAF=4961;SAP=5660.94;SAR=1015;SRF=2010;SRP=1859.32;SRR=535;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1284:-115.862,-10.8371,0	1/1:83:0,83:0:0:83:2968:-267.353,-24.9855,0	1/1:125:0,125:0:0:125:4452:-400.853,-37.6288,0	1/1:140:0,140:0:0:140:4984:-448.712,-42.1442,0	0/1:61:36,25:36:1296:25:888:-61.8762,0,-98.5811	0/1:36:21,15:21:752:15:540:-38.0995,0,-57.1692	0/1:180:108,72:108:3872:72:2584:-178.623,0,-294.489	1/1:99:3,96:3:108:96:3410:-297.04,-19.7268,0	1/1:57:0,57:0:0:57:2020:-181.753,-17.1587,0	1/1:95:0,95:0:0:95:3394:-305.672,-28.5979,0	0/1:103:49,54:49:1752:54:1905:-140.72,0,-126.958	1/1:63:0,63:0:0:63:2217:-199.791,-18.9649,0	1/1:54:0,54:0:0:54:1897:-171.004,-16.2556,0	1/1:48:0,48:0:0:48:1697:-153.015,-14.4494,0	1/1:74:0,74:0:0:74:2608:-234.968,-22.2762,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:74:40,34:40:1440:34:1220:-87.8306,0,-107.622	1/1:51:0,51:0:0:51:1827:-164.71,-15.3525,0	0/1:48:29,19:29:1040:19:666:-45.8141,0,-79.4649	0/1:282:153,129:153:5461:129:4575:-327.028,0,-406.728	0/1:159:94,65:94:3364:65:2306:-159.885,0,-255.068	0/1:78:59,19:59:2107:19:684:-38.41,0,-166.418	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:88:3,85:3:108:85:3026:-262.494,-16.4155,0	0/1:62:33,29:33:1180:29:1040:-75.2505,0,-87.8442	1/1:212:0,212:0:0:212:7489:-674.057,-63.8184,0	0/1:164:77,87:77:2760:87:3101:-229.948,0,-199.273	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:261:0,261:0:0:261:9271:-834.364,-78.5688,0	0/1:80:39,41:39:1392:41:1468:-108.334,0,-101.497	0/1:164:106,58:106:3792:58:2080:-138.101,0,-292.11	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	1/1:14:0,14:0:0:14:496:-44.973,-4.21442,0	0/1:241:146,95:146:5209:95:3389:-232.676,0,-396.401	0/1:113:56,57:56:2001:57:2031:-149.046,0,-146.345	1/1:65:0,65:0:0:65:2322:-209.24,-19.567,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:74:5,69:5:180:69:2444:-203.661,-5.72416,0	1/1:44:0,44:0:0:44:1566:-141.23,-13.2453,0	0/1:128:60,68:60:2135:68:2420:-179.522,0,-153.886	0/1:110:60,50:60:2151:50:1792:-128.449,0,-160.743	0/1:87:45,42:45:1604:42:1472:-106.582,0,-118.461	1/1:99:0,99:0:0:99:3535:-318.359,-29.802,0	1/1:59:0,59:0:0:59:2104:-189.627,-17.7608,0	0/1:129:69,60:69:2476:60:2140:-154.035,0,-184.261	0/1:123:66,57:66:2356:57:2032:-146.126,0,-175.272	1/1:162:0,162:0:0:162:5770:-519.417,-48.7669,0	0/1:203:114,89:114:4079:89:3166:-223.622,0,-306.187	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/1:127:86,41:86:3088:41:1472:-94.5453,0,-239.916	0/1:49:32,17:32:1132:17:612:-40.663,0,-87.4381	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	1/1:124:2,122:2:72:122:4346:-384.479,-30.491,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	0/1:65:38,27:38:1356:27:968:-67.8704,0,-102.774	1/1:168:2,166:2:72:166:5915:-525.625,-43.7363,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:116:0,116:0:0:116:4115:-370.536,-34.9195,0	0/1:185:88,97:88:3144:97:3468:-256.642,0,-227.496	1/1:51:1,50:1:36:50:1776:-156.525,-11.7543,0	1/1:81:0,81:0:0:81:2871:-258.628,-24.3834,0	1/1:168:1,167:1:36:167:5963:-533.181,-46.9748,0	1/1:102:0,102:0:0:102:3636:-327.446,-30.7051,0	1/1:39:0,39:0:0:39:1337:-120.622,-11.7402,0	1/1:93:0,93:0:0:93:3323:-299.288,-27.9958,0	0/1:118:66,52:66:2368:52:1839:-130.268,0,-177.856	0/1:31:16,15:16:572:15:532:-38.8812,0,-42.4815	0/1:83:53,30:53:1900:30:1073:-71.8971,0,-146.292	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:130:82,48:82:2932:48:1693:-113.52,0,-224.981	0/1:219:119,100:119:4255:100:3574:-255.941,0,-317.203	0/1:56:30,26:30:1068:26:932:-67.3412,0,-79.5744	1/1:80:0,79:0:0:79:2828:-254.399,-23.7814,0	0/1:13:3,10:3:108:10:351:-28.0133,0,-6.16178	0/1:109:51,58:51:1832:58:2044:-151.413,0,-132.349	0/1:110:50,60:50:1792:60:2147:-160.384,0,-128.449	1/1:155:0,155:0:0:155:5509:-495.939,-46.6597,0	1/1:99:0,99:0:0:99:3535:-318.359,-29.802,0	1/1:68:0,68:0:0:68:2419:-217.966,-20.47,0	0/1:105:67,38:67:2404:38:1360:-91.0924,0,-185.008	0/1:156:84,72:84:2989:72:2553:-183.06,0,-222.278	1/1:38:1,37:1:36:37:1300:-113.7,-7.84087,0	1/1:55:0,55:0:0:55:1937:-174.603,-16.5567,0	1/1:58:0,58:0:0:58:2070:-186.569,-17.4597,0	0/1:67:39,28:39:1396:28:977:-68.071,0,-105.77	0/1:83:47,36:47:1679:36:1283:-90.7871,0,-126.411	0/1:104:77,27:77:2744:27:972:-56.4908,0,-215.896	1/1:152:1,151:1:36:151:5388:-481.453,-42.1583,0	1/1:123:0,123:0:0:123:4351:-391.767,-37.0267,0
chr04	32718692	.	C	G	84238.9	PASS	AB=0.529055;ABP=53.7357;AC=45;AF=0.239362;AN=188;AO=3691;CIGAR=1X;DP=13956;DPB=13956;DPRA=1.21922;EPP=8009.23;EPPR=22264.9;GTI=1;LEN=1;MEANALT=1.12727;MQM=59.9949;MQMR=59.9852;NS=94;NUMALT=1;ODDS=0.494994;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130855;QR=364216;RO=10252;RPL=1945;RPP=26.3082;RPPR=57.2412;RPR=1746;RUN=1;SAF=1944;SAP=25.8422;SAR=1747;SRF=4873;SRP=57.2412;SRR=5379;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/0:197:197,0:197:6998:0:0:0,-59.3029,-629.884	0/0:206:206,0:206:7237:0:0:0,-62.0122,-651.393	0/0:214:214,0:214:7606:0:0:0,-64.4204,-684.582	0/1:89:42,47:42:1486:47:1684:-125.055,0,-107.241	0/1:45:21,24:21:739:24:849:-63.1823,0,-53.286	0/1:218:88,130:88:3164:130:4615:-349.892,0,-219.359	0/0:213:210,3:210:7436:3:104:0,-54.4166,-659.588	0/0:99:99,0:99:3509:0:0:0,-29.802,-315.594	0/0:145:145,0:145:5170:0:0:0,-43.6493,-465.439	0/1:147:85,62:85:3026:62:2169:-151.221,0,-228.319	0/0:146:146,0:146:5146:0:0:0,-43.9504,-463.284	0/0:126:126,0:126:4433:0:0:0,-37.9298,-399.143	0/0:156:155,0:155:5471:0:0:0,-46.6596,-492.164	0/0:118:118,0:118:4182:0:0:0,-35.5215,-376.562	0/0:97:97,0:97:3462:0:0:0,-29.1999,-311.792	0/1:143:69,73:69:2471:73:2567:-188.173,0,-179.537	0/0:111:111,0:111:3967:0:0:0,-33.4143,-357.221	0/1:98:39,59:39:1374:59:2082:-158.148,0,-94.4562	0/1:374:176,198:176:6275:198:7039:-520.99,0,-452.261	0/1:232:94,138:94:3350:138:4920:-373.11,0,-231.791	0/1:96:25,71:25:891:71:2535:-199.502,0,-51.6099	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/0:160:152,8:152:5405:8:284:0,-22.2614,-460.675	0/1:99:51,48:51:1824:48:1703:-123.753,0,-134.639	0/0:308:308,0:308:10999:0:0:0,-92.7172,-989.803	0/1:327:174,151:174:6143:151:5384:-386.496,0,-454.778	0/0:72:72,0:72:2540:0:0:0,-21.6742,-228.85	0/0:403:402,0:402:14177:0:0:0,-121.014,-1275.32	0/1:200:104,96:104:3710:96:3390:-245.11,0,-273.896	0/1:200:85,115:85:3007:115:4106:-309.52,0,-210.657	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:21:11,10:11:387:10:352:-25.6966,0,-28.8443	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:13:5,8:5:180:8:280:-21.6259,0,-12.6387	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8721	0/1:344:152,191:152:5395:191:6763:-505.132,0,-382.07	0/1:201:101,100:101:3593:100:3538:-258.121,0,-263.07	0/0:151:151,0:151:5380:0:0:0,-45.4555,-484.332	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:200:195,5:195:6953:5:180:0,-43.6539,-609.285	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.91	0/1:168:77,91:77:2709:91:3230:-240.35,0,-193.482	0/1:158:74,84:74:2640:84:2969:-219.879,0,-190.285	0/1:117:62,55:62:2195:55:1949:-140.463,0,-162.595	0/0:139:138,0:138:4915:0:0:0,-41.5421,-442.144	0/0:158:157,0:157:5602:0:0:0,-47.2617,-503.943	0/1:186:91,95:91:3247:95:3359:-246.536,0,-236.46	0/1:157:74,83:74:2635:83:2938:-217.39,0,-189.978	0/0:213:213,0:213:7613:0:0:0,-64.1194,-685.207	0/1:251:104,146:104:3723:146:5172:-390.004,0,-259.653	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	0/1:243:92,151:92:3257:151:5412:-414.059,0,-220.201	0/1:59:25,34:25:892:34:1212:-91.6251,0,-62.8389	0/1:27:10,17:10:360:17:608:-46.9242,0,-24.6165	0/0:242:240,2:240:8521:2:63:0,-66.8661,-760.908	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:99:41,58:41:1444:58:2075:-157.218,0,-100.451	0/0:253:250,3:250:8909:3:108:0,-66.0854,-791.719	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:198:198,0:198:7055:0:0:0,-59.6039,-635.012	0/1:257:136,120:136:4825:120:4233:-303.726,0,-356.982	0/0:127:122,5:122:4367:5:180:0,-21.6787,-376.651	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/0:193:191,1:191:6760:1:36:0,-54.5593,-604.88	0/0:138:138,0:138:4892:0:0:0,-41.5421,-440.432	0/0:95:95,0:95:3350:0:0:0,-28.5978,-301.717	0/0:167:167,0:167:5959:0:0:0,-50.272,-536.419	0/1:177:93,84:93:3294:84:2963:-213.62,0,-243.396	0/1:42:19,23:19:680:23:815:-61.0275,0,-48.8859	0/1:164:84,80:84:2976:80:2851:-207.459,0,-218.706	0/0:128:128,0:128:4537:0:0:0,-38.5318,-408.497	0/1:248:115,133:115:4114:133:4671:-345.896,0,-295.788	0/1:304:148,155:148:5288:155:5504:-403.916,0,-384.482	0/1:105:50,55:50:1787:55:1947:-143.895,0,-129.504	0/0:217:215,2:215:7686:2:72:0,-58.4868,-684.938	0/1:28:18,10:18:644:10:356:-23.9524,0,-49.8618	0/1:202:116,86:116:4144:86:3044:-213.382,0,-312.336	0/1:213:111,102:111:3912:102:3601:-260.179,0,-288.155	0/0:247:246,0:246:8752:0:0:0,-74.0534,-787.315	0/0:160:160,0:160:5687:0:0:0,-48.1648,-511.95	0/0:106:105,1:105:3694:1:36:0,-28.3109,-329.066	0/1:152:63,89:63:2237:89:3137:-236.799,0,-155.836	0/1:230:117,113:117:4140:113:3997:-290.685,0,-303.549	0/0:80:80,0:80:2838:0:0:0,-24.0824,-255.659	0/0:141:141,0:141:4983:0:0:0,-42.4452,-448.622	0/0:119:119,0:119:4243:0:0:0,-35.8226,-382.05	0/1:130:59,71:59:2111:71:2530:-188.817,0,-151.124	0/1:193:102,91:102:3611:91:3216:-231.563,0,-267.097	0/1:139:44,95:44:1567:95:3351:-259.965,0,-99.4777	0/0:195:194,1:194:6914:1:36:0,-55.1026,-618.729	0/0:189:189,0:189:6616:0:0:0,-56.8947,-595.372
chr04	32719742	.	T	A	180334	PASS	AB=0.479519;ABP=23.2909;AC=142;AF=0.755319;AN=188;AO=8560;CIGAR=1X;DP=11488;DPB=11488;DPRA=61.7527;EPP=18582.1;EPPR=6296.01;GTI=1;LEN=1;MEANALT=1.09677;MQM=58.5036;MQMR=59.5123;NS=94;NUMALT=1;ODDS=1.07504;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=306286;QR=104292;RO=2918;RPL=8559;RPP=18582.1;RPPR=6304.67;RPR=1;RUN=1;SAF=0;SAP=18590.8;SAR=8560;SRF=1;SRP=6330.68;SRR=2917;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:70:1,69:1:21:69:2441:-216.992,-18.9722,0	1/1:192:0,192:0:0:192:6894:-619.94,-57.7978,0	1/1:148:0,147:0:0:147:5255:-471.934,-44.2514,0	1/1:213:0,213:0:0:213:7629:-685.851,-64.1194,0	0/1:100:46,54:46:1656:54:1940:-144.563,0,-119.196	0/1:99:52,47:52:1857:47:1680:-120.902,0,-137.587	0/1:155:82,73:82:2925:73:2620:-189.212,0,-216.791	1/1:182:0,182:0:0:182:6503:-584.05,-54.7875,0	1/1:90:0,90:0:0:90:3215:-289.307,-27.0927,0	1/1:128:0,127:0:0:127:4545:-408.492,-38.2308,0	0/1:121:59,62:59:2109:62:2204:-162.161,0,-153.557	1/1:102:0,102:0:0:102:3651:-328.285,-30.7051,0	1/1:74:0,74:0:0:74:2656:-238.899,-22.2762,0	1/1:168:0,168:0:0:168:6013:-539.819,-50.573,0	1/1:76:0,76:0:0:76:2728:-245.696,-22.8783,0	1/1:60:0,60:0:0:60:2152:-193.844,-18.0618,0	0/1:105:57,47:57:2044:47:1673:-118.881,0,-152.521	1/1:75:0,75:0:0:75:2696:-242.72,-22.5773,0	0/1:70:36,34:36:1296:34:1220:-88.9186,0,-95.8718	0/1:265:125,140:125:4484:140:5020:-372.015,0,-323.634	0/1:168:83,85:83:2972:85:3048:-223.767,0,-216.615	0/1:145:108,37:108:3824:37:1309:-74.0579,0,-300.607	1/1:92:0,92:0:0:92:3281:-295.046,-27.6948,0	1/1:149:3,146:3:108:146:5220:-459.15,-34.7783,0	0/1:121:59,62:59:2097:62:2201:-161.886,0,-152.533	1/1:307:1,304:1:36:304:10894:-976.239,-88.5691,0	0/1:253:131,122:131:4670:122:4380:-317.885,0,-344.048	1/1:34:0,34:0:0:34:1224:-110.42,-10.235,0	1/1:354:0,354:0:0:354:12605:-1133.24,-106.565,0	0/1:180:109,71:109:3912:71:2544:-174.827,0,-297.997	0/1:152:79,73:79:2832:73:2611:-189.356,0,-209.346	0/1:6:5,1:5:176:1:36:-1.79109,0,-14.3788	0/1:45:17,28:17:608:28:1000:-76.6351,0,-41.4995	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:23:11,12:11:392:12:422:-31.3605,0,-28.6964	1/1:14:0,14:0:0:14:500:-45.3196,-4.21442,0	0/1:262:128,134:128:4573:134:4769:-350.266,0,-332.853	0/1:233:132,101:132:4736:101:3611:-254.758,0,-356.215	1/1:85:0,84:0:0:84:3000:-269.541,-25.2865,0	1/1:3:0,3:0:0:3:108:-10.0733,-0.90309,0	1/1:166:0,166:0:0:166:5956:-535.815,-49.971,0	1/1:58:0,58:0:0:58:2066:-185.777,-17.4597,0	0/1:131:63,67:63:2234:67:2412:-177.386,0,-161.802	0/1:47:21,26:21:748:26:927:-69.5852,0,-53.3896	0/1:54:29,25:29:1021:25:896:-64.6597,0,-75.9283	1/1:107:0,107:0:0:107:3818:-343.72,-32.2102,0	1/1:168:0,167:0:0:167:5975:-536.817,-50.272,0	0/1:184:94,90:94:3372:90:3217:-234.26,0,-248.221	0/1:134:73,61:73:2628:61:2196:-157.488,0,-196.406	1/1:189:0,189:0:0:189:6746:-606.907,-56.8947,0	0/1:135:44,91:44:1557:91:3272:-253.961,0,-99.7501	0/1:10:5,5:5:180:5:167:-12.2814,0,-13.5418	0/1:173:94,79:94:3380:79:2834:-203.054,0,-251.937	0/1:88:43,45:43:1544:45:1620:-119.597,0,-112.738	0/1:19:12,7:12:413:7:252:-17.3005,0,-31.7783	1/1:171:1,170:1:21:170:6089:-545.458,-49.3762,0	1/1:33:0,33:0:0:33:1180:-106.289,-9.93399,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:47:0,47:0:0:47:1688:-152.149,-14.1484,0	0/1:120:60,60:60:2156:60:2152:-156.966,0,-157.956	1/1:171:2,169:2:72:169:6064:-538.295,-44.6394,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:147:0,147:0:0:147:5284:-475.526,-44.2514,0	0/1:213:97,116:97:3461:116:4145:-308.951,0,-247.555	1/1:84:5,79:5:176:79:2831:-238.063,-9.10586,0	1/1:107:0,107:0:0:107:3801:-342.226,-32.2102,0	1/1:115:2,113:2:72:113:4055:-358.224,-27.7817,0	1/1:494:1,492:1:36:492:17556:-1575.18,-145.169,0	1/1:60:2,58:2:72:58:2080:-180.523,-11.2251,0	1/1:119:1,118:1:21:118:4208:-376.346,-33.7228,0	0/1:107:55,52:55:1980:52:1872:-136.488,0,-146.187	0/1:39:28,11:28:1008:11:396:-24.214,0,-79.2717	0/1:123:87,36:87:3101:36:1292:-79.4536,0,-242.151	1/1:60:0,60:0:0:60:2134:-192.071,-18.0618,0	0/1:186:80,106:80:2872:106:3787:-282.482,0,-202.22	0/1:205:90,115:90:3217:115:4136:-310.652,0,-228.003	0/1:167:86,81:86:3092:81:2878:-208.746,0,-228.209	1/1:87:0,87:0:0:87:3120:-280.73,-26.1896,0	0/1:11:5,6:5:180:6:216:-16.4736,0,-13.2407	0/1:138:65,73:65:2328:73:2628:-195.03,0,-168.219	0/1:161:90,71:90:3202:71:2548:-180.858,0,-239.686	1/1:299:1,297:1:21:297:10633:-953.805,-87.8919,0	1/1:124:1,123:1:21:123:4407:-394.469,-35.2278,0	1/1:88:0,88:0:0:88:3160:-284.621,-26.4906,0	0/1:78:44,34:44:1580:34:1220:-86.5981,0,-118.992	0/1:136:75,61:75:2673:61:2177:-155.164,0,-199.862	1/1:39:0,39:0:0:39:1400:-126.128,-11.7402,0	1/1:87:0,87:0:0:87:3124:-281.151,-26.1896,0	1/1:92:0,92:0:0:92:3276:-294.747,-27.6948,0	0/1:107:69,38:69:2461:38:1355:-89.8827,0,-189.507	0/1:228:124,104:124:4448:104:3722:-265.993,0,-331.822	0/1:69:43,26:43:1544:26:932:-63.3544,0,-118.446	1/1:74:0,74:0:0:74:2660:-239.584,-22.2762,0	1/1:97:0,97:0:0:97:3472:-312.602,-29.1999,0
chr04	32719750	.	ACCCTA	ACCTTA,ACCTA	245614	PASS	AB=0.493426,0.501096;ABP=5.06598,3.0674;AC=142,46;AF=0.755319,0.244681;AN=188;AO=8675,2761;CIGAR=3M1X2M,1M1D4M;DP=11492;DPB=11030.7;DPRA=123.559,1.1135;EPP=18840.5,5998.45;EPPR=16.0391;GTI=1;LEN=1,1;MEANALT=2.08602,2.54717;MQM=58.5512,59.561;MQMR=60;NS=94;NUMALT=2;ODDS=4.11977;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=310383,97107;QR=210;RO=6;RPL=8675,2761;RPP=18840.5,5998.45;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=0,0;SAP=18840.5,5998.45;SAR=8675,2761;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/1:70:0,69,0:0:0:69,0:2465,0:-221.402,-20.7711,0,-221.402,-20.7711,-221.402	1/1:196:0,195,0:0:0:195,0:6974,0:-626.775,-58.7009,0,-626.775,-58.7009,-626.775	1/1:153:0,153,0:0:0:153,0:5447,0:-489.307,-46.0576,0,-489.307,-46.0576,-489.307	1/1:213:0,210,0:0:0:210,0:7525,0:-676.644,-63.2163,0,-676.644,-63.2163,-676.644	1/2:100:0,54,46:0:0:54,46:1925,1636:-290.394,-133.666,-117.41,-157.083,0,-143.236	1/2:96:0,46,50:0:0:46,50:1642,1743:-275.52,-142.078,-128.231,-133.794,0,-118.742	1/2:150:0,74,76:0:0:74,76:2641,2706:-436.098,-220.889,-198.612,-215.565,0,-192.687	1/1:187:0,185,0:0:0:185,0:6611,0:-593.381,-55.6906,0,-593.381,-55.6906,-593.381	1/1:92:0,92,0:0:0:92,0:3259,0:-293.293,-27.6948,0,-293.293,-27.6948,-293.293	1/1:132:0,132,0:0:0:132,0:4695,0:-422.418,-39.736,0,-422.418,-39.736,-422.418	1/2:119:0,62,57:0:0:62,57:2228,2024:-346.884,-165.186,-146.522,-182.054,0,-164.895	1/1:104:0,104,0:0:0:104,0:3725,0:-334.833,-31.3071,0,-334.833,-31.3071,-334.833	1/1:75:0,75,0:0:0:75,0:2696,0:-242.492,-22.5773,0,-242.492,-22.5773,-242.492	1/1:173:0,172,0:0:0:172,0:6184,0:-555.194,-51.7772,0,-555.194,-51.7772,-555.194	1/1:76:0,76,0:0:0:76,0:2728,0:-245.696,-22.8783,0,-245.696,-22.8783,-245.696	1/1:59:0,58,0:0:0:58,0:2083,0:-187.391,-17.4597,0,-187.391,-17.4597,-187.391	1/2:100:0,47,53:0:0:47,53:1684,1851:-287.888,-150.856,-136.708,-137.385,0,-121.43	1/1:77:0,77,0:0:0:77,0:2768,0:-249.09,-23.1793,0,-249.09,-23.1793,-249.09	1/2:66:0,33,33:0:0:33,33:1188,1184:-193.753,-96.9237,-86.9897,-97.1885,0,-87.2546	1/2:255:0,136,118:0:0:136,118:4892,4125:-734.451,-335.445,-294.504,-399.109,0,-363.588	1/2:164:0,87,76:0:0:87,76:3112,2629:-466.967,-213.61,-187.421,-253.353,0,-230.475	1/2:138:0,36,101:0:0:36,101:1279,3532:-391.334,-287.39,-276.553,-104.084,0,-73.6795	1/1:94:0,93,0:0:0:93,0:3328,0:-298.947,-27.9958,0,-298.947,-27.9958,-298.947	1/1:153:0,148,3:0:0:148,3:5301,104:-476.272,-44.5524,0,-467.819,-36.0806,-466.916	1/2:124:0,65,59:0:0:65,59:2298,2047:-353.835,-166.717,-147.15,-187.467,0,-169.706	1/1:312:1,310,0:1:36:310,0:11099,0:-994.618,-90.3703,0,-994.919,-93.3193,-997.856	1/2:247:2,121,122:2:71:121,122:4341,4270:-694.647,-341.536,-310.896,-347.925,0,-316.984	1/1:34:0,33,1:0:0:33,1:1188,36:-106.829,-9.93399,0,-103.897,-6.6436,-103.596	1/1:356:0,356,0:0:0:356,0:12769,0:-1147.65,-107.167,0,-1147.65,-107.167,-1147.65	1/2:179:0,74,104:0:0:74,104:2652,3671:-514.913,-298.892,-276.616,-216.021,0,-184.714	1/2:151:0,74,76:0:0:74,76:2656,2644:-431.549,-215.028,-192.752,-216.593,0,-193.715	1/2:6:0,1,5:0:0:1,5:36,165:-16.6099,-13.6685,-13.3674,-3.29624,0,-1.79109	1/2:43:0,28,15:0:0:28,15:1004,528:-125.088,-43.3297,-34.9009,-82.1126,0,-77.5971	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:21:0,12,9:0:0:12,9:417,324:-60.6751,-26.7966,-23.1842,-34.2329,0,-31.5237	1/1:14:0,14,0:0:0:14,0:504,0:-45.6809,-4.21442,0,-45.6809,-4.21442,-45.6809	1/2:259:0,138,119:0:0:138,119:4945,4226:-747.555,-344.377,-302.835,-403.222,0,-367.4	1/2:231:0,104,126:0:0:104,126:3709,4490:-668.11,-365.959,-334.652,-302.148,0,-264.218	1/1:87:0,87,0:0:0:87,0:3124,0:-280.978,-26.1896,0,-280.978,-26.1896,-280.978	1/1:3:0,3,0:0:0:3,0:108,0:-10.0733,-0.90309,0,-10.0733,-0.90309,-10.0733	1/1:173:0,173,0:0:0:173,0:6193,0:-557.172,-52.0782,0,-557.172,-52.0782,-557.172	1/1:59:0,59,0:0:0:59,0:2119,0:-190.594,-17.7608,0,-190.594,-17.7608,-190.594	1/2:130:0,67,61:0:0:67,61:2396,2161:-371.057,-176.012,-155.843,-195.045,0,-176.682	1/2:50:0,27,22:0:0:27,22:968,772:-141.716,-62.7886,-54.6608,-78.9977,0,-72.375	1/2:52:0,24,27:0:0:24,27:864,942:-147.168,-76.664,-69.4393,-70.5755,0,-62.4477	1/1:110:0,110,0:0:0:110,0:3944,0:-355.057,-33.1133,0,-355.057,-33.1133,-355.057	1/1:168:0,168,0:0:0:168,0:5983,0:-537.797,-50.573,0,-537.797,-50.573,-537.797	1/2:176:0,93,81:0:0:93,81:3294,2854:-500.566,-232.316,-204.32,-268.245,0,-243.861	1/2:135:0,64,70:0:0:64,70:2288,2481:-388.631,-202.178,-182.912,-186.527,0,-165.455	1/1:190:0,189,0:0:0:189,0:6746,0:-606.708,-56.8947,0,-606.708,-56.8947,-606.708	1/2:133:0,92,41:0:0:92,41:3289,1433:-384.992,-116.893,-89.1986,-268.45,0,-256.108	1/2:10:0,5,5:0:0:5,5:180,180:-29.4759,-15.0469,-13.5418,-14.786,0,-13.2809	1/2:172:0,80,91:0:0:80,91:2849,3210:-493.03,-261.053,-236.971,-231.971,0,-204.578	1/2:84:0,45,39:0:0:45,39:1597,1380:-242.854,-112.739,-99.1926,-130.47,0,-118.729	1/2:19:0,7,12:0:0:7,12:222,398:-50.377,-32.5245,-30.4173,-18.1748,0,-14.5625	1/1:173:0,172,1:0:0:172,1:6133,36:-550.951,-51.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chr04	32743551	.	TTACG	CTACG,CTACA	187833	PASS	AB=0.471425,0.523443;ABP=33.4145,23.4744;AC=141,45;AF=0.758065,0.241935;AN=186;AO=6458,2259;CIGAR=1X4M,1X3M1X;DP=8755;DPB=8755;DPRA=95.1522,1.26366;EPP=14026.4,4908.37;EPPR=9.52472;GTI=2;LEN=1,5;MEANALT=1.95652,2.40741;MQM=59.9723,59.784;MQMR=60;NS=93;NUMALT=2;ODDS=1.37306;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=231228,80358;QR=99;RO=3;RPL=0,0;RPP=14026.4,4908.37;RPPR=9.52472;RPR=6458,2259;RUN=1,1;SAF=6458,2259;SAP=14026.4,4908.37;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,56,0:0:0:56,0:1992,0:-179.554,-16.8577,0,-179.554,-16.8577,-179.554	1/1:175:0,174,0:0:0:174,0:6232,0:-560.615,-52.3792,0,-560.615,-52.3792,-560.615	1/1:138:0,138,0:0:0:138,0:4927,0:-443.581,-41.5421,0,-443.581,-41.5421,-443.581	1/1:122:1,120,0:1:35:120,0:4280,0:-381.905,-33.2508,0,-382.207,-36.1236,-385.054	1/2:108:0,60,47:0:0:60,47:2160,1676:-312.857,-136.611,-118.549,-176.293,0,-162.144	1/2:117:0,71,44:0:0:71,44:2544,1574:-335.927,-128.444,-107.071,-207.582,0,-194.337	1/2:141:0,71,68:0:0:71,68:2536,2425:-404.417,-197.656,-176.283,-206.758,0,-186.288	1/1:171:0,169,1:0:0:169,1:6021,36:-541.672,-50.8741,0,-538.735,-47.8967,-538.434	1/1:105:0,105,0:0:0:105,0:3772,0:-339.649,-31.6082,0,-339.649,-31.6082,-339.649	1/1:102:0,102,0:0:0:102,0:3660,0:-329.603,-30.7051,0,-329.603,-30.7051,-329.603	1/2:69:1,30,38:1:36:30,38:1071,1352:-194.224,-107.21,-101.117,-84.3735,0,-75.8718	1/1:88:0,87,0:0:0:87,0:3124,0:-281.026,-26.1896,0,-281.026,-26.1896,-281.026	1/1:88:0,88,0:0:0:88,0:3139,0:-282.736,-26.4906,0,-282.736,-26.4906,-282.736	1/1:59:0,59,0:0:0:59,0:2120,0:-191.068,-17.7608,0,-191.068,-17.7608,-191.068	1/1:94:0,93,0:0:0:93,0:3332,0:-299.738,-27.9958,0,-299.738,-27.9958,-299.738	1/1:48:0,47,1:0:0:47,1:1679,36:-151.037,-14.1484,0,-148.099,-10.8512,-147.798	1/2:87:0,48,37:0:0:48,37:1709,1317:-246.627,-107.338,-92.8883,-139.298,0,-128.16	1/1:74:0,74,0:0:0:74,0:2649,0:-238.385,-22.2762,0,-238.385,-22.2762,-238.385	1/2:30:0,12,18:0:0:12,18:432,647:-88.3905,-53.1413,-49.5289,-35.6088,0,-30.1903	1/2:229:0,104,125:0:0:104,125:3732,4451:-667.546,-363.131,-331.823,-304.773,0,-267.144	1/2:163:0,84,79:0:0:84,79:3012,2786:-472.836,-227.189,-201.903,-246.002,0,-222.221	1/2:57:0,15,42:0:0:15,42:536,1495:-165.903,-122.201,-117.685,-44.0594,0,-31.4161	1/1:105:0,104,0:0:0:104,0:3744,0:-336.818,-31.3071,0,-336.818,-31.3071,-336.818	1/1:138:0,136,2:0:0:136,2:4872,72:-438.271,-40.9401,0,-432.396,-34.7054,-431.794	1/2:73:0,33,40:0:0:33,40:1184,1419:-212.543,-115.965,-106.031,-96.9343,0,-84.8931	1/1:187:0,185,0:0:0:185,0:6628,0:-596.3,-55.6906,0,-596.3,-55.6906,-596.3	1/2:257:0,125,132:0:0:125,132:4480,4696:-748.446,-383.063,-345.434,-365.74,0,-326.004	1/1:41:0,41,0:0:0:41,0:1463,0:-131.965,-12.3422,0,-131.965,-12.3422,-131.965	1/1:222:0,222,0:0:0:222,0:7948,0:-715.315,-66.8287,0,-715.315,-66.8287,-715.315	1/2:95:0,51,42:0:0:51,42:1828,1509:-272.25,-123.159,-107.807,-149.146,0,-136.503	1/2:122:0,65,56:0:0:65,56:2321,1991:-351.558,-162.334,-142.767,-189.308,0,-172.45	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:10:0,7,3:0:0:7,3:252,108:-29.734,-9.17208,-7.06487,-20.9217,0,-20.0187	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:9:0,4,5:0:0:4,5:144,174:-26.2511,-14.4961,-13.292,-12.1095,0,-10.6043	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:197:0,90,106:0:0:90,106:3236,3784:-572.418,-308.409,-281.316,-264.008,0,-232.099	1/2:113:0,45,68:0:0:45,68:1616,2404:-327.969,-196.142,-182.596,-132.184,0,-111.714	1/1:58:0,57,0:0:0:57,0:2048,0:-184.232,-17.1587,0,-184.232,-17.1587,-184.232	.:.:.:.:.:.:.:.	1/1:112:0,108,4:0:0:108,4:3884,144:-349.393,-32.5112,0,-337.643,-20.4017,-336.439	1/1:41:0,41,0:0:0:41,0:1468,0:-132.416,-12.3422,0,-132.416,-12.3422,-132.416	1/2:195:0,70,124:0:0:70,124:2477,4415:-561.643,-359.887,-338.815,-201.8,0,-164.473	1/2:111:0,57,54:0:0:57,54:2043,1923:-323.711,-157.085,-139.927,-166.982,0,-150.727	1/2:58:0,25,33:0:0:25,33:896,1156:-167.49,-94.4097,-86.884,-73.4346,0,-63.5006	1/1:74:0,74,0:0:0:74,0:2648,0:-238.567,-22.2762,0,-238.567,-22.2762,-238.567	1/1:95:0,95,0:0:0:95,0:3392,0:-305.496,-28.5979,0,-305.496,-28.5979,-305.496	1/2:146:0,72,73:0:0:72,73:2572,2597:-421.337,-211.638,-189.963,-209.696,0,-187.721	1/2:54:0,36,18:0:0:36,18:1296,629:-157.27,-51.5162,-40.6792,-106.107,0,-100.688	1/1:90:0,90,0:0:0:90,0:3220,0:-290.023,-27.0927,0,-290.023,-27.0927,-290.023	1/2:154:0,75,79:0:0:75,79:2692,2799:-447.957,-228.366,-205.789,-219.947,0,-196.166	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:156:0,57,99:0:0:57,99:2048,3519:-454.189,-287.114,-269.955,-167.433,0,-137.631	1/2:29:0,10,19:0:0:10,19:360,663:-83.6502,-54.2723,-51.262,-29.734,0,-24.0144	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:146:1,144,1:1:28:144,1:5156,36:-461.324,-41.1695,0,-458.687,-40.371,-460.604	1/1:56:0,56,0:0:0:56,0:2012,0:-181.351,-16.8577,0,-181.351,-16.8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chr04	32790710	.	A	T	16068.6	PASS	AB=0.444542;ABP=63.9458;AC=45;AF=0.239362;AN=188;AO=1025;CIGAR=1X;DP=5133;DPB=5133;DPRA=1.12135;EPP=2228.77;EPPR=8916.9;GTI=2;LEN=1;MEANALT=1.02;MQM=59.9659;MQMR=59.981;NS=94;NUMALT=1;ODDS=1.33086;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36684;QR=146894;RO=4105;RPL=0;RPP=2228.77;RPPR=8916.9;RPR=1025;RUN=1;SAF=1025;SAP=2228.77;SAR=0;SRF=4105;SRP=8916.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:102:102,0:102:3649:0:0:0,-30.7051,-328.613	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/1:24:8,16:8:288:16:572:-44.5887,0,-19.0427	0/1:27:16,11:16:576:11:392:-27.4922,0,-44.0472	0/1:65:44,21:44:1572:21:752:-48.437,0,-122.205	0/0:122:122,0:122:4373:0:0:0,-36.7257,-393.741	0/0:67:66,0:66:2376:0:0:0,-19.868,-213.738	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:28:12,16:12:432:16:572:-43.3846,0,-30.7924	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.862	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/1:37:19,18:19:684:18:644:-47.1525,0,-50.7522	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:28:17,11:17:612:11:392:-27.1912,0,-46.9846	0/1:85:48,37:48:1709:37:1324:-93.8745,0,-128.42	0/1:53:25,28:25:900:28:993:-73.7279,0,-65.3664	0/1:41:16,25:16:576:25:888:-67.8968,0,-39.8328	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/0:114:113,1:113:4026:1:36:0,-30.7191,-358.928	0/1:36:12,24:12:432:24:860:-66.8848,0,-28.3841	0/0:222:222,0:222:7949:0:0:0,-66.8287,-715.429	0/1:89:49,40:49:1760:40:1421:-101.394,0,-131.892	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:125:123,2:123:4341:2:72:0,-30.792,-384.025	0/1:80:56,22:56:2008:22:784:-47.0156,0,-157.153	0/1:43:25,18:25:870:18:648:-45.7076,0,-65.6677	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:137:68,69:68:2444:69:2476:-181.852,0,-178.973	0/1:118:64,54:64:2304:54:1944:-139.714,0,-172.099	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:116:115,1:115:4117:1:36:0,-31.3212,-367.114	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3731	0/1:94:45,49:45:1601:49:1760:-130.387,0,-116.081	0/1:44:27,17:27:972:17:612:-42.1681,0,-74.5526	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.944	0/1:93:65,28:65:2302:28:1004:-62.6801,0,-179.442	0/1:56:35,21:35:1241:21:752:-51.1486,0,-95.1348	0/0:56:56,0:56:2001:0:0:0,-16.8577,-180.362	0/1:106:63,43:63:2264:43:1544:-107.344,0,-172.113	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:65:37,28:37:1332:28:1000:-70.7484,0,-100.615	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:44:25,19:25:885:19:680:-48.2838,0,-66.7212	0/0:87:86,1:86:3096:1:36:0,-22.5913,-275.268	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/1:117:64,53:64:2273:53:1896:-135.698,0,-169.61	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.5	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:85:83,2:83:2965:2:72:0,-18.7508,-260.245	0/0:67:64,3:64:2281:3:108:0,-10.0938,-195.475	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:41:23,18:23:828:18:648:-46.3097,0,-62.5019	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.5363	0/1:70:41,29:41:1472:29:1040:-72.8423,0,-111.704	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:102:59,43:59:2090:43:1539:-108.098,0,-157.171	0/1:82:59,23:59:2124:23:828:-50.1597,0,-166.554	0/1:58:35,23:35:1245:23:820:-56.6628,0,-94.893	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:50:23,27:23:828:27:968:-72.3859,0,-59.7926	0/1:39:24,15:24:864:15:525:-35.8379,0,-66.3424	0/0:117:117,0:117:4208:0:0:0,-35.2205,-378.899	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:47:26,21:26:932:21:736:-52.4081,0,-70.0505	0/1:83:41,42:41:1472:42:1507:-110.939,0,-107.791	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:31:31,0:31:1082:0:0:0,-9.33193,-97.6847	0/1:19:8,11:8:284:11:396:-30.2632,0,-20.1838	0/1:54:29,25:29:1040:25:900:-65.0654,0,-77.6587	0/1:44:15,29:15:536:29:1035:-80.2186,0,-35.3295	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47
chr04	32818835	.	C	T	24889.3	PASS	AB=0.457475;ABP=55.6447;AC=44;AF=0.236559;AN=186;AO=1540;CIGAR=1X;DP=7232;DPB=7232;DPRA=1.16261;EPP=3347.08;EPPR=12350;GTI=1;LEN=1;MEANALT=1.02;MQM=60;MQMR=59.9916;NS=93;NUMALT=1;ODDS=0.0540094;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55097;QR=203536;RO=5686;RPL=1540;RPP=3347.08;RPPR=12350;RPR=0;RUN=1;SAF=0;SAP=3347.08;SAR=1540;SRF=0;SRP=12350;SRR=5686;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:95:94,0:94:3361:0:0:0,-28.2968,-302.345	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:64:46,18:46:1652:18:648:-39.386,0,-129.703	0/1:23:13,10:13:464:10:337:-23.731,0,-35.1738	0/1:43:26,17:26:936:17:608:-42.1077,0,-71.6152	0/0:147:147,0:147:5251:0:0:0,-44.2514,-472.728	0/0:141:141,0:141:5036:0:0:0,-42.4452,-453.387	0/0:57:54,0:54:1921:0:0:0,-16.2556,-172.806	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:32:31,1:31:1116:1:36:0,-6.03468,-97.1534	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/1:102:58,44:58:2076:44:1557:-109.715,0,-156.405	0/1:214:124,90:124:4456:90:3208:-224.521,0,-336.788	0/1:103:43,60:43:1544:60:2160:-163.661,0,-108.247	0/0:84:83,1:83:2946:1:36:0,-21.6882,-261.773	0/0:48:47,1:47:1684:1:32:0,-11.2501,-148.648	0/1:108:58,50:58:2076:50:1796:-129.411,0,-154.599	0/0:216:216,0:216:7741:0:0:0,-65.0225,-696.229	0/1:166:84,82:84:3005:82:2910:-212.162,0,-220.709	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:160:160,0:160:5710:0:0:0,-48.1648,-514.016	0/1:80:44,36:44:1576:36:1269:-90.4284,0,-118.049	0/1:77:42,35:42:1500:35:1235:-88.2726,0,-112.115	0/1:30:24,6:24:860:6:216:-10.7596,0,-68.6909	0/1:14:4,10:4:144:10:345:-27.1664,0,-9.0992	.:.:.:.:.:.:.:.	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:131:71,60:71:2537:60:2156:-154.872,0,-189.144	0/1:213:149,64:149:5329:64:2296:-142.782,0,-415.623	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:72:71,0:71:2521:0:0:0,-21.3731,-226.781	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:185:85,100:85:3037:100:3573:-266.086,0,-217.868	0/1:93:56,37:56:2012:37:1317:-90.834,0,-153.357	0/1:37:20,17:20:720:17:608:-43.9139,0,-53.9907	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.995	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/1:119:73,46:73:2620:46:1646:-112.606,0,-200.225	0/1:62:29,33:29:1029:33:1188:-88.5647,0,-74.2573	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:99:50,49:50:1792:49:1764:-129.242,0,-131.761	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:113:57,56:57:2048:56:2016:-147.696,0,-150.575	0/1:48:31,17:31:1104:17:612:-40.964,0,-85.2212	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:41:20,21:20:705:21:756:-56.025,0,-51.4306	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/1:134:88,45:88:3145:45:1612:-104.973,0,-242.877	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:523:521,2:521:18670:2:72:0,-150.602,-1673.03	0/0:204:204,0:204:7292:0:0:0,-61.4101,-656.247	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.631	0/1:43:17,26:17:612:26:936:-71.6152,0,-42.4691	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/1:138:68,70:68:2444:70:2520:-185.509,0,-178.672	0/0:51:50,1:50:1800:1:36:0,-11.7543,-158.684	0/1:83:42,41:42:1493:41:1476:-108.151,0,-109.677	0/1:109:52,57:52:1872:57:2044:-151.42,0,-135.947	0/1:82:39,43:39:1400:43:1548:-114.929,0,-101.615	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:23:12,11:12:432:11:392:-28.6964,0,-32.2975	0/1:32:18,14:18:648:14:500:-35.7032,0,-49.0189	0/1:63:31,32:31:1116:32:1152:-85.0253,0,-81.7868	0/0:162:162,0:162:5796:0:0:0,-48.7669,-521.754	0/0:68:67,1:67:2387:1:28:0,-17.6703,-212.287	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:43:26,17:26:936:17:612:-42.4691,0,-71.6152	0/1:127:64,63:64:2300:63:2263:-165.701,0,-169.03	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.564	0/1:27:17,10:17:612:10:360:-24.6165,0,-47.2856	0/1:49:24,25:24:864:25:896:-66.2099,0,-63.3321	0/1:142:58,84:58:2072:84:2997:-227.214,0,-144.005	0/0:98:98,0:98:3505:0:0:0,-29.5009,-315.659	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386
chr04	32822495	.	GCA	GCG,ACG	275390	PASS	AB=0.486784,0.509112;ABP=12.2513,7.4028;AC=143,45;AF=0.760638,0.239362;AN=188;AO=9888,3132;CIGAR=2M1X,1X1M1X;DP=13072;DPB=13077;DPRA=0,1.1059;EPP=21457.2,6804.06;EPPR=13.8677;GTI=0;LEN=1,3;MEANALT=2.07447,2.5082;MQM=59.9828,59.9496;MQMR=56.4;NS=94;NUMALT=2;ODDS=8.68327;PAIRED=0,0;PAIREDR=0;PAO=0,15;PQA=0,532;PQR=0;PRO=0;QA=349873,107588;QR=170;RO=5;RPL=9876,3129;RPP=21370.4,6778.03;RPPR=6.91895;RPR=12,3;RUN=1,1;SAF=9876,3129;SAP=21370.4,6778.03;SAR=12,3;SRF=1;SRP=6.91895;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,46,1:0:0:46,1:1601,36:-144.001,-13.8474,0,-141.063,-10.5501,-140.762	1/1:210:0,208,2:0:0:208,2:7395,72:-665.238,-62.6142,0,-659.363,-56.3796,-658.761	1/1:143:0,143,0:0:0:143,0:5049,0:-454.559,-43.0473,0,-454.559,-43.0473,-454.559	1/1:309:0,307,1:0:0:307,1:10787,36:-970.471,-92.4162,0,-967.534,-89.3989,-967.233	1/2:80:0,32,48:0:0:32,48:1127,1639:-225.095,-133.343,-123.71,-92.0999,0,-77.6504	1/2:118:0,66,52:0:0:66,52:2350,1802:-338.345,-146.806,-126.938,-191.89,0,-176.236	1/2:169:0,76,93:0:0:76,93:2690,3151:-474.939,-255.821,-232.943,-219.465,0,-191.469	1/1:291:0,289,0:0:0:289,0:10227,0:-918.754,-86.9977,0,-918.754,-86.9977,-918.754	1/1:233:0,233,0:0:0:233,0:8279,0:-745.126,-70.14,0,-745.126,-70.14,-745.126	1/1:123:0,123,0:0:0:123,0:4375,0:-393.923,-37.0267,0,-393.923,-37.0267,-393.923	1/2:138:0,76,62:0:0:76,62:2685,2136:-392.15,-173.482,-150.604,-218.657,0,-199.993	1/1:122:0,122,0:0:0:122,0:4291,0:-386.362,-36.7257,0,-386.362,-36.7257,-386.362	1/1:128:0,128,0:0:0:128,0:4544,0:-409.131,-38.5318,0,-409.131,-38.5318,-409.131	1/1:450:0,447,1:0:0:447,1:15738,36:-1415.78,-134.56,0,-1412.84,-131.623,-1412.54	1/1:108:0,108,0:0:0:108,0:3787,0:-341.027,-32.5112,0,-341.027,-32.5112,-341.027	1/1:115:0,115,0:0:0:115,0:4074,0:-366.849,-34.6185,0,-366.849,-34.6185,-366.849	1/2:124:0,59,64:0:0:59,64:2090,2240:-352.604,-182.347,-164.586,-170.356,0,-151.091	1/1:112:0,112,0:0:0:112,0:3954,0:-356.043,-33.7154,0,-356.043,-33.7154,-356.043	1/2:96:0,58,37:0:0:58,37:2056,1305:-273.83,-106.331,-88.8717,-167.569,0,-156.431	1/2:211:0,101,109:0:0:101,109:3593,3732:-595.819,-302.996,-272.592,-292.892,0,-260.08	1/2:203:0,110,92:0:0:110,92:3898,3150:-573.231,-255.676,-222.563,-317.543,0,-289.849	1/2:127:0,37,88:0:0:37,88:1311,2992:-349.54,-242.737,-231.598,-106.864,0,-80.3737	1/1:286:0,284,0:0:0:284,0:10058,0:-904.803,-85.4925,0,-904.803,-85.4925,-904.803	1/1:122:0,118,4:0:0:118,4:4173,144:-375.393,-35.5215,0,-363.643,-23.412,-362.439	1/2:87:0,47,40:0:0:47,40:1632,1389:-245.934,-113.264,-99.1158,-133.017,0,-120.976	1/1:385:0,379,2:0:0:379,2:13377,67:-1203.44,-114.09,0,-1198.02,-108.645,-1197.42	1/2:287:0,134,152:0:0:134,152:4713,5204:-806.138,-422.505,-382.167,-383.729,0,-337.973	1/1:47:0,47,0:0:0:47,0:1676,0:-151.127,-14.1484,0,-151.127,-14.1484,-151.127	1/1:325:0,324,0:0:0:324,0:11431,0:-1028.32,-97.5337,0,-1028.32,-97.5337,-1028.32	1/2:143:0,73,68:0:0:73,68:2547,2362:-399.075,-191.918,-169.943,-207.184,0,-186.714	1/2:294:0,152,142:0:0:152,142:5397,4948:-842.107,-402.352,-356.596,-440.106,0,-397.36	1/2:15:0,6,9:0:0:6,9:196,317:-41.9794,-26.1605,-24.3543,-16.1558,0,-13.4465	1/2:26:0,11,15:0:0:11,15:392,527:-75.1995,-43.2448,-39.9335,-32.3087,0,-27.7933	1/2:11:0,3,8:0:0:3,8:108,254:-29.5864,-20.7626,-19.8595,-9.17208,0,-6.76384	1/2:22:0,10,12:0:0:10,12:360,413:-63.2676,-33.8862,-30.8759,-29.734,0,-26.1216	1/1:45:0,45,0:0:0:45,0:1601,0:-144.378,-13.5464,0,-144.378,-13.5464,-144.378	1/2:269:1,137,131:1:28:137,131:4783,4558:-757.151,-368.41,-329.387,-386.842,0,-349.625	1/2:193:0,97,94:0:0:97,94:3433,3224:-541.433,-261.806,-232.606,-279.693,0,-251.396	1/1:152:1,151,0:1:34:151,0:5349,0:-478.152,-42.3634,0,-478.453,-45.4555,-481.206	1/1:7:0,7,0:0:0:7,0:244,0:-22.2994,-2.10721,0,-22.2994,-2.10721,-22.2994	1/1:181:0,175,2:0:0:175,2:6204,63:-558.151,-52.6803,0,-553.085,-47.6099,-552.483	1/1:69:0,69,0:0:0:69,0:2440,0:-219.818,-20.7711,0,-219.818,-20.7711,-219.818	1/2:177:0,90,86:0:0:90,86:3185,2935:-497.415,-237.984,-210.891,-259.491,0,-233.602	1/2:155:0,80,75:0:0:80,75:2843,2587:-441.818,-210.142,-186.059,-231.667,0,-209.09	1/2:85:0,42,43:0:0:42,43:1491,1437:-238.169,-116.674,-104.031,-121.84,0,-108.896	1/1:108:0,108,0:0:0:108,0:3812,0:-343.278,-32.5112,0,-343.278,-32.5112,-343.278	1/1:135:0,135,0:0:0:135,0:4753,0:-427.93,-40.6391,0,-427.93,-40.6391,-427.93	1/2:212:0,99,113:0:0:99,113:3533,3842:-599.996,-311.969,-282.167,-288.376,0,-254.36	1/2:61:0,25,36:0:0:25,36:881,1234:-172.253,-100.521,-92.9952,-72.0801,0,-61.243	1/1:131:1,129,1:1:36:129,1:4603,27:-410.879,-35.853,0,-409.052,-36.7489,-411.686	1/2:216:0,95,120:0:0:95,120:3353,4102:-605.952,-332.912,-304.314,-273.048,0,-236.925	1/2:10:0,5,5:0:0:5,5:180,178:-29.5526,-14.8635,-13.3583,-15.0469,0,-13.5418	1/2:148:0,73,74:0:0:73,74:2580,2565:-418.601,-208.478,-186.503,-210.128,0,-187.852	1/2:74:0,28,46:0:0:28,46:991,1580:-209.364,-128.639,-120.21,-81.0747,0,-67.2273	1/2:16:0,5,10:0:0:5,10:176,329:-40.8952,-26.5609,-25.0557,-14.3214,0,-11.3111	1/1:140:0,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chr04	32848412	.	G	A	253887	PASS	AB=0.595618;ABP=470.598;AC=143;AF=0.760638;AN=188;AO=10447;CIGAR=1X;DP=12864;DPB=12864;DPRA=0;EPP=22454.5;EPPR=5169.17;GTI=2;LEN=1;MEANALT=1.05319;MQM=50.1646;MQMR=59.7578;NS=94;NUMALT=1;ODDS=0.427412;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=371250;QR=86238;RO=2411;RPL=7183;RPP=3195.38;RPPR=5049.08;RPR=3264;RUN=1;SAF=7210;SAP=3283.96;SAR=3237;SRF=2397;SRP=5117.53;SRR=14;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1576:-138.645,-13.2453,0	1/1:171:0,171:0:0:171:6088:-537.128,-51.4761,0	1/1:193:2,191:2:72:191:6808:-588.692,-51.2621,0	1/1:318:1,317:1:36:317:11251:-890.455,-92.1293,0	0/1:130:47,83:47:1688:83:2972:-209.344,0,-113.073	0/1:100:49,51:49:1760:51:1820:-132.359,0,-128.581	0/1:214:78,136:78:2796:136:4828:-328.583,0,-187.46	1/1:187:0,187:0:0:187:6696:-592.518,-56.2926,0	1/1:111:0,111:0:0:111:3944:-348.979,-33.4143,0	1/1:118:1,117:1:36:117:4106:-322.586,-31.9233,0	0/1:93:37,56:37:1323:56:2008:-145.744,0,-90.8172	1/1:98:1,97:1:32:97:3476:-306.084,-26.3016,0	1/1:99:0,99:0:0:99:3532:-312.689,-29.802,0	1/1:129:0,129:0:0:129:4576:-386.894,-38.8329,0	1/1:110:0,110:0:0:110:3912:-332.372,-33.1133,0	1/1:101:0,101:0:0:101:3593:-300.82,-30.404,0	0/1:98:36,62:36:1292:62:2212:-166.627,0,-87.0828	1/1:60:1,59:1:36:59:2101:-184.07,-14.4635,0	0/1:82:37,45:37:1324:45:1608:-119.955,0,-94.7776	0/1:276:95,181:95:3395:181:6341:-426.541,0,-220.462	0/1:189:67,122:67:2370:122:4307:-291.113,0,-156.663	0/1:69:43,26:43:1536:26:928:-56.4932,0,-116.571	1/1:149:0,149:0:0:149:5295:-424.713,-44.8535,0	1/1:270:16,254:16:572:254:9038:-684.485,-29.4647,0	0/1:111:46,65:46:1652:65:2299:-158.034,0,-115.554	1/1:352:0,352:0:0:352:12518:-1046.73,-105.963,0	0/1:273:103,170:103:3686:170:6063:-411.974,0,-249.532	1/1:69:0,69:0:0:69:2464:-202.019,-20.7711,0	1/1:351:0,351:0:0:351:12436:-1017.89,-105.662,0	0/1:140:52,88:52:1855:88:3125:-218.598,0,-125.085	0/1:169:73,96:73:2615:96:3373:-229.469,0,-184.723	0/1:10:3,7:3:108:7:244:-15.1669,0,-7.06487	0/1:17:6,11:6:201:11:392:-26.3928,0,-13.2995	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:11:7,4:7:248:4:144:-9.62244,0,-19.3529	1/1:10:0,10:0:0:10:360:-32.1789,-3.0103,0	0/1:210:95,115:95:3404:115:4073:-286.373,0,-241.82	0/1:140:55,85:55:1964:85:2992:-203.83,0,-134.891	1/1:107:1,106:1:36:106:3804:-333.238,-28.6119,0	1/1:13:0,13:0:0:13:468:-41.8991,-3.91339,0	1/1:276:5,271:5:180:271:9652:-757.93,-66.5322,0	1/1:75:0,75:0:0:75:2680:-223.478,-22.5773,0	0/1:168:62,106:62:2223:106:3763:-251.307,0,-149.76	0/1:92:23,69:23:824:69:2468:-177.053,0,-46.7886	0/1:86:35,51:35:1256:51:1808:-125.379,0,-87.4567	1/1:101:0,101:0:0:101:3604:-288.698,-30.404,0	1/1:135:0,135:0:0:135:4816:-410.477,-40.6391,0	0/1:204:88,116:88:3127:116:4081:-270.6,0,-216.488	0/1:160:54,106:54:1935:106:3690:-246.737,0,-126.261	1/1:247:0,246:0:0:246:8750:-726.625,-74.0534,0	0/1:217:83,134:83:2972:134:4757:-331.434,0,-202.389	0/1:17:7,10:7:252:10:352:-24.7073,0,-17.9114	0/1:186:93,93:93:3332:93:3324:-237.113,0,-243.249	0/1:56:26,30:26:915:30:1072:-74.0605,0,-65.8079	0/1:14:8,6:8:284:6:216:-15.1997,0,-21.6889	1/1:206:1,205:1:36:205:7265:-601.744,-58.4139,0	1/1:86:0,85:0:0:85:3032:-238.873,-25.5876,0	1/1:13:0,13:0:0:13:464:-39.3364,-3.91339,0	1/1:17:0,17:0:0:17:608:-50.4879,-5.11751,0	0/1:133:48,85:48:1728:85:3012:-211.078,0,-115.768	1/1:166:0,166:0:0:166:5912:-490.977,-49.971,0	1/1:8:0,8:0:0:8:288:-23.6187,-2.40824,0	1/1:182:0,182:0:0:182:6446:-534.875,-54.7875,0	0/1:254:94,158:94:3360:158:5574:-383.018,0,-226.398	1/1:115:1,114:1:36:114:4056:-341.653,-31.0202,0	1/1:130:0,130:0:0:130:4604:-364.906,-39.1339,0	1/1:218:0,218:0:0:218:7649:-620.293,-65.6245,0	1/1:202:0,202:0:0:202:7102:-571.592,-60.8081,0	1/1:72:0,72:0:0:72:2572:-225.36,-21.6742,0	1/1:116:0,116:0:0:116:4153:-369.895,-34.9195,0	0/1:115:36,79:36:1288:79:2795:-202.824,0,-81.6051	0/1:32:17,15:17:600:15:536:-36.6265,0,-44.6962	0/1:91:40,51:40:1440:51:1828:-132.416,0,-102.504	1/1:63:0,63:0:0:63:2248:-196.444,-18.9649,0	0/1:440:188,251:188:6708:251:8972:-641.882,0,-470.914	0/1:231:81,150:81:2883:150:5348:-371.686,0,-188.893	0/1:96:45,51:45:1603:51:1824:-131.905,0,-114.297	1/1:120:0,120:0:0:120:4284:-377,-36.1236,0	0/1:4:2,2:2:72:2:72:-4.46909,0,-5.6326	0/1:189:69,120:69:2476:120:4261:-296.497,0,-166.199	0/1:112:47,65:47:1684:65:2317:-172.709,0,-118.132	1/1:488:0,488:0:0:488:17328:-1438.5,-146.903,0	1/1:150:2,148:2:63:148:5235:-421.102,-39.1913,0	1/1:97:0,97:0:0:97:3440:-291.423,-29.1999,0	0/1:121:56,65:56:2008:65:2332:-155.836,0,-144.569	0/1:161:66,95:66:2376:95:3361:-235.938,0,-165.632	1/1:57:0,57:0:0:57:2036:-181.657,-17.1587,0	1/1:116:0,116:0:0:116:4146:-363.467,-34.9195,0	1/1:123:1,122:1:36:122:4376:-384.045,-33.4284,0	0/1:105:51,54:51:1832:54:1936:-138.685,0,-133.553	0/1:192:75,117:75:2696:117:4192:-307.536,0,-185.086	0/1:74:51,23:51:1832:23:815:-48.329,0,-141.433	1/1:167:0,166:0:0:166:5902:-472.904,-49.971,0	1/1:170:0,170:0:0:170:6053:-507.336,-51.1751,0
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chr04	32887641	.	A	G	41370.9	PASS	AB=0.49811;ABP=3.12521;AC=44;AF=0.23913;AN=184;AO=1863;CIGAR=1X;DP=8281;DPB=8281;DPRA=0.89913;EPP=3.62689;EPPR=175.146;GTI=1;LEN=1;MEANALT=1.07547;MQM=59.788;MQMR=59.7898;NS=92;NUMALT=1;ODDS=0.940198;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65702;QR=229231;RO=6413;RPL=4;RPP=4013.79;RPPR=13807.3;RPR=1859;RUN=1;SAF=947;SAP=4.13042;SAR=916;SRF=2864;SRP=161.892;SRR=3549;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.452	0/0:105:105,0:105:3725:0:0:0,-31.6081,-335.391	0/0:186:186,0:186:6628:0:0:0,-55.9916,-595.56	0/0:152:152,0:152:5435:0:0:0,-45.7566,-489.047	0/1:51:28,23:28:1008:23:820:-58.5795,0,-75.6746	0/1:58:31,27:31:1112:27:955:-68.8051,0,-82.9153	0/1:90:41,49:41:1464:49:1760:-131.59,0,-104.963	0/0:206:206,0:206:7352:0:0:0,-62.0122,-661.713	0/0:156:156,0:156:5577:0:0:0,-46.9607,-502.014	0/0:90:90,0:90:3227:0:0:0,-27.0927,-290.651	0/1:66:34,32:34:1224:32:1127:-81.8685,0,-90.5991	0/0:172:172,0:172:6176:0:0:0,-51.7772,-555.721	0/0:126:126,0:126:4503:0:0:0,-37.9298,-405.439	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.766	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.977	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.825	0/1:70:36,34:36:1296:34:1202:-87.4113,0,-95.8718	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.614	0/1:35:14,21:14:504:21:747:-57.0101,0,-35.162	0/1:116:59,57:59:2112:57:2016:-146.789,0,-155.43	0/1:158:85,73:85:3037:73:2590:-185.786,0,-225.996	0/1:41:17,24:17:597:24:834:-63.0324,0,-41.713	0/0:124:123,1:123:4381:1:36:0,-33.7294,-390.857	0/0:66:60,6:60:2137:6:212:0,-0.443182,-173.164	0/1:71:38,32:38:1356:32:1144:-81.8358,0,-100.902	0/0:203:203,0:203:7251:0:0:0,-61.1091,-652.627	0/1:155:69,86:69:2476:86:3030:-226.251,0,-176.425	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.701	0/0:108:108,0:108:3846:0:0:0,-32.5112,-346.242	0/1:68:27,40:27:972:40:1405:-106.211,0,-67.2609	0/1:84:51,33:51:1828:33:1159:-79.3196,0,-139.475	.:.:.:.:.:.:.:.	0/1:12:5,7:5:176:7:248:-19.0518,0,-12.5727	0/1:5:1,4:1:36:4:131:-10.6075,0,-2.09312	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:211:102,109:102:3652:109:3866:-284.618,0,-265.365	0/1:44:25,19:25:881:19:680:-48.2838,0,-66.3605	0/0:41:41,0:41:1464:0:0:0,-12.3422,-131.95	.:.:.:.:.:.:.:.	0/0:90:85,5:85:3031:5:180:0,-10.5406,-256.46	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:207:112,95:112:3991:95:3314:-236.163,0,-296.169	0/1:143:56,87:56:2008:87:2997:-226.903,0,-137.946	0/1:90:45,45:45:1611:45:1586:-115.935,0,-118.187	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:86:85,1:85:3033:1:36:0,-22.2903,-269.544	0/1:125:63,62:63:2260:62:2203:-160.89,0,-166.001	0/1:53:23,30:23:820:30:1063:-80.0262,0,-58.1679	0/0:165:164,1:164:5846:1:36:0,-46.0717,-522.65	0/1:42:21,21:21:748:21:739:-54.189,0,-55.0011	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.6661	0/1:100:68,32:68:2431:32:1112:-70.2511,0,-188.629	0/1:42:22,20:22:788:20:697:-50.4061,0,-58.6015	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:134:134,0:134:4791:0:0:0,-40.338,-431.319	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.083	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:81:48,33:48:1728:33:1152:-79.5923,0,-131.422	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.045	0/1:158:85,73:85:3018:73:2555:-182.632,0,-224.151	0/0:67:66,1:66:2345:1:36:0,-16.5707,-207.705	0/0:24:23,1:23:811:1:32:0,-4.02541,-70.1107	0/0:187:187,0:187:6649:0:0:0,-56.2926,-598.467	0/0:94:93,0:93:3309:0:0:0,-27.9958,-297.523	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.017	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:71:35,36:35:1251:36:1279:-94.0393,0,-91.5201	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:83:47,36:47:1677:36:1252:-87.9938,0,-126.152	0/0:105:105,0:105:3776:0:0:0,-31.6081,-339.965	0/1:133:76,57:76:2707:57:2006:-140.758,0,-203.678	0/1:113:56,57:56:2008:57:2011:-147.246,0,-146.967	0/1:148:79,69:79:2828:69:2436:-174.942,0,-210.182	0/0:105:105,0:105:3743:0:0:0,-31.6081,-336.359	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:108:64,44:64:2286:44:1571:-109.159,0,-173.48	0/1:119:61,58:61:2192:58:2056:-149.486,0,-161.714	0/0:157:156,1:156:5584:1:36:0,-43.6634,-499.077	0/0:71:70,1:70:2516:1:36:0,-17.7749,-223.078	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.478	0/1:90:34,56:34:1224:56:1957:-149.306,0,-83.3743	0/1:171:78,92:78:2787:92:3226:-239.143,0,-199.654	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2656	0/0:81:81,0:81:2886:0:0:0,-24.3834,-259.843	0/0:114:114,0:114:4068:0:0:0,-34.3174,-366.259	0/1:53:24,29:24:864:29:1044:-78.3202,0,-62.128	0/1:89:44,45:44:1575:45:1612:-118.533,0,-115.203	0/1:119:39,79:39:1396:79:2796:-215.989,0,-90.0578	0/0:193:193,0:193:6894:0:0:0,-58.0988,-620.509	0/0:145:145,0:145:5204:0:0:0,-43.6493,-468.496
chr04	32887647	.	G	A	175833	PASS	AB=0.494361;ABP=4.03889;AC=140;AF=0.76087;AN=184;AO=6345;CIGAR=1X;DP=8248;DPB=8248;DPRA=0;EPP=11535.6;EPPR=3144.75;GTI=0;LEN=1;MEANALT=1.02174;MQM=59.7858;MQMR=59.7542;NS=92;NUMALT=1;ODDS=0.287944;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225569;QR=67402;RO=1900;RPL=2584;RPP=477.116;RPPR=68.8402;RPR=3761;RUN=1;SAF=2854;SAP=141.878;SAR=3491;SRF=951;SRP=3.01487;SRR=949;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:67:0,67:0:0:67:2390:-215.308,-20.169,0	1/1:102:0,102:0:0:102:3586:-322.909,-30.7051,0	1/1:178:0,178:0:0:178:6278:-564.718,-53.5833,0	1/1:149:0,149:0:0:149:5274:-474.565,-44.8535,0	0/1:51:22,29:22:780:29:1029:-77.5594,0,-55.0831	0/1:60:28,32:28:978:32:1152:-85.8896,0,-70.2694	0/1:89:47,42:47:1688:42:1478:-106.502,0,-125.414	1/1:210:0,210:0:0:210:7480:-672.864,-63.2163,0	1/1:155:0,155:0:0:155:5523:-497.157,-46.6597,0	1/1:89:0,89:0:0:89:3183:-286.693,-26.7917,0	0/1:66:32,34:32:1152:34:1224:-90.5991,0,-84.1222	1/1:164:0,164:0:0:164:5819:-523.805,-49.3689,0	1/1:125:0,125:0:0:125:4462:-401.738,-37.6288,0	1/1:119:0,119:0:0:119:4246:-382.264,-35.8226,0	1/1:93:0,93:0:0:93:3328:-299.733,-27.9958,0	1/1:87:0,87:0:0:87:3078:-277.247,-26.1896,0	0/1:72:36,36:36:1284:36:1288:-94.5494,0,-93.7565	1/1:50:0,50:0:0:50:1783:-160.736,-15.0515,0	0/1:36:22,14:22:777:14:500:-34.4991,0,-59.4133	0/1:118:58,60:58:2045:60:2139:-157.256,0,-148.794	0/1:160:76,84:76:2668:84:2928:-215.586,0,-192.198	0/1:42:25,17:25:887:17:612:-42.7693,0,-67.5038	1/1:121:1,120:1:32:120:4239:-378.477,-33.2253,0	1/1:68:6,62:6:216:62:2190:-177.565,-0.679528,0	0/1:72:34,38:34:1211:38:1351:-100.209,0,-87.6167	1/1:199:0,199:0:0:199:7090:-638.131,-59.905,0	0/1:154:85,69:85:3028:69:2468:-176.009,0,-226.381	1/1:35:0,35:0:0:35:1242:-112.079,-10.5361,0	1/1:106:0,106:0:0:106:3761:-338.599,-31.9092,0	0/1:71:44,27:44:1562:27:968:-66.0561,0,-119.489	0/1:84:34,50:34:1224:50:1768:-134.114,0,-85.0873	.:.:.:.:.:.:.:.	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:210:107,103:107:3806:103:3686:-268.723,0,-279.52	0/1:44:20,24:20:708:24:841:-62.761,0,-50.8003	1/1:40:0,40:0:0:40:1427:-128.712,-12.0412,0	.:.:.:.:.:.:.:.	1/1:90:5,85:5:180:85:3014:-254.929,-10.5406,0	1/1:44:0,44:0:0:44:1563:-140.961,-13.2453,0	0/1:213:100,113:100:3526:113:4010:-296.611,0,-253.385	0/1:144:89,55:89:3165:55:1958:-133.146,0,-241.703	0/1:88:44,44:44:1567:44:1580:-116.001,0,-114.827	1/1:68:0,68:0:0:68:2402:-216.433,-20.47,0	1/1:85:1,84:1:36:84:2986:-265.357,-21.9893,0	0/1:126:63,63:63:2251:63:2247:-164.53,0,-164.907	0/1:54:31,23:31:1099:23:812:-57.1453,0,-82.9638	1/1:164:1,163:1:36:163:5840:-522.111,-45.7706,0	0/1:41:21,20:21:737:20:712:-52.0635,0,-54.308	0/1:8:5,3:5:176:3:108:-7.6661,0,-13.7768	0/1:96:31,64:31:1108:64:2247:-173.489,0,-70.8855	0/1:41:19,22:19:684:22:792:-59.2634,0,-49.5447	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:130:0,130:0:0:130:4622:-416.119,-39.1339,0	1/1:48:0,48:0:0:48:1697:-153.009,-14.4494,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:82:34,48:34:1216:48:1724:-130.761,0,-85.0493	1/1:108:0,108:0:0:108:3850:-346.696,-32.5112,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:75:1,74:1:21:74:2617:-233.484,-20.4773,0	0/1:158:74,84:74:2613:84:2926:-215.985,0,-187.842	1/1:65:1,64:1:36:64:2282:-202.038,-15.9687,0	1/1:22:1,21:1:36:21:723:-61.7881,-3.02439,0	1/1:185:0,185:0:0:185:6584:-592.624,-55.6906,0	1/1:94:0,92:0:0:92:3281:-295.245,-27.6948,0	1/1:57:0,57:0:0:57:2033:-183.239,-17.1587,0	1/1:50:0,50:0:0:50:1776:-160.12,-15.0515,0	0/1:72:37,35:37:1316:35:1248:-90.9494,0,-97.0676	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:82:35,47:35:1208:47:1677:-126.52,0,-84.3328	1/1:102:0,102:0:0:102:3650:-328.683,-30.7051,0	0/1:132:60,72:60:2113:72:2536:-188.593,0,-150.647	0/1:118:61,57:61:2175:57:2028:-147.266,0,-160.436	0/1:150:72,78:72:2517:78:2808:-207.78,0,-181.436	1/1:105:0,105:0:0:105:3729:-335.743,-31.6082,0	0/1:9:7,2:7:243:2:72:-4.12745,0,-19.4982	0/1:108:44,64:44:1541:64:2282:-173.12,0,-106.461	0/1:117:60,57:60:2156:57:2043:-148.921,0,-159.086	1/1:159:1,158:1:36:158:5616:-501.954,-44.2655,0	1/1:70:0,70:0:0:70:2504:-225.602,-21.0721,0	1/1:83:0,83:0:0:83:2948:-265.545,-24.9855,0	0/1:91:57,34:57:2033:34:1198:-80.7303,0,-155.844	0/1:171:94,77:94:3315:77:2716:-193.207,0,-246.373	1/1:22:0,22:0:0:22:792:-71.6011,-6.62266,0	1/1:78:0,78:0:0:78:2773:-249.739,-23.4803,0	1/1:113:0,113:0:0:113:4048:-364.301,-34.0164,0	0/1:54:30,24:30:1080:24:847:-60.2931,0,-81.2576	0/1:89:45,44:45:1603:44:1569:-114.708,0,-117.759	0/1:118:79,39:79:2813:39:1391:-89.9667,0,-217.882	1/1:186:0,186:0:0:186:6576:-591.911,-55.9916,0	1/1:144:0,144:0:0:144:5141:-462.831,-43.3483,0
chr04	32899576	.	C	A	144330	PASS	AB=0.501277;ABP=3.06575;AC=141;AF=0.758065;AN=186;AO=5865;CIGAR=1X;DP=7841;DPB=7841;DPRA=0;EPP=6351.89;EPPR=1818.37;GTI=0;LEN=1;MEANALT=1.06452;MQM=59.8097;MQMR=59.9964;NS=93;NUMALT=1;ODDS=2.96501;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209837;QR=69802;RO=1969;RPL=5003;RPP=6351.89;RPPR=1818.37;RPR=862;RUN=1;SAF=5865;SAP=12738.7;SAR=0;SRF=1969;SRP=4278.64;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:207:-18.9651,-1.80618,0	1/1:92:0,92:0:0:92:3274:-294.87,-27.6948,0	1/1:72:0,72:0:0:72:2564:-230.691,-21.6742,0	1/1:125:0,125:0:0:125:4472:-402.583,-37.6288,0	0/1:22:9,13:9:320:13:468:-35.8361,0,-22.5197	0/1:27:10,17:10:360:17:608:-46.9242,0,-24.6165	0/1:124:69,55:69:2451:55:1972:-140.426,0,-183.517	1/1:154:0,154:0:0:154:5493:-494.44,-46.3586,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:76:0,76:0:0:76:2712:-244.319,-22.8783,0	0/1:120:55,64:55:1968:64:2300:-171.152,0,-141.301	1/1:92:0,92:0:0:92:3286:-295.959,-27.6948,0	1/1:99:1,98:1:32:98:3504:-312.363,-26.6027,0	1/1:165:0,165:0:0:165:5911:-532.088,-49.67,0	1/1:76:0,75:0:0:75:2666:-239.823,-22.5773,0	1/1:63:0,63:0:0:63:2235:-201.412,-18.9649,0	0/1:116:62,54:62:2182:54:1928:-138.649,0,-161.723	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	0/1:64:25,39:25:887:39:1396:-106.673,0,-60.8822	0/1:92:49,43:49:1726:43:1529:-110.197,0,-127.929	0/1:132:66,66:66:2347:66:2360:-172.923,0,-171.753	0/1:137:98,39:98:3456:39:1396:-84.6962,0,-270.013	1/1:51:4,47:4:144:47:1684:-138.515,-2.03891,0	1/1:68:3,65:3:108:65:2313:-198.337,-10.3949,0	0/1:64:36,28:36:1292:28:1004:-71.4099,0,-97.3178	1/1:225:0,225:0:0:225:8061:-725.222,-67.7318,0	0/1:172:83,89:83:2945:89:3191:-235.62,0,-213.506	1/1:47:0,47:0:0:47:1688:-152.202,-14.1484,0	1/1:146:0,146:0:0:146:5213:-469.305,-43.9504,0	0/1:102:39,63:39:1379:63:2260:-172.913,0,-93.7029	0/1:105:44,61:44:1568:61:2184:-165.069,0,-109.803	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:231:124,107:124:4385:107:3848:-276.974,0,-325.286	0/1:121:47,73:47:1684:73:2617:-199.275,0,-115.364	1/1:99:0,99:0:0:99:3535:-318.307,-29.802,0	.:.:.:.:.:.:.:.	1/1:94:1,93:1:36:93:3317:-294.918,-24.6985,0	1/1:25:0,25:0:0:25:880:-79.5166,-7.52575,0	0/1:74:38,36:38:1351:36:1296:-94.6677,0,-99.6134	0/1:83:40,43:40:1432:43:1540:-113.906,0,-104.192	0/1:73:32,41:32:1144:41:1468:-110.395,0,-81.2943	1/1:79:0,79:0:0:79:2840:-255.835,-23.7814,0	1/1:84:0,84:0:0:84:2943:-264.991,-25.2865,0	0/1:132:72,60:72:2515:60:2152:-154.209,0,-186.866	0/1:107:50,57:50:1762:57:2048:-152.372,0,-126.652	1/1:95:0,95:0:0:95:3398:-305.976,-28.5979,0	0/1:61:32,29:32:1127:29:1044:-75.9111,0,-83.3746	0/1:12:4,8:4:140:8:288:-22.655,0,-9.33222	0/1:55:26,29:26:924:29:1040:-77.3219,0,-66.921	0/1:56:31,25:31:1095:25:889:-63.4656,0,-82.0014	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:73:0,73:0:0:73:2616:-235.687,-21.9752,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:3:0,3:0:0:3:108:-10.0172,-0.90309,0	1/1:11:0,11:0:0:11:388:-35.2493,-3.31133,0	0/1:96:49,47:49:1756:47:1688:-123.262,0,-129.421	1/1:133:2,131:2:72:131:4691:-415.485,-33.2003,0	1/1:4:0,4:0:0:4:144:-13.2672,-1.20412,0	1/1:160:0,159:0:0:159:5671:-510.063,-47.8638,0	0/1:97:42,55:42:1484:55:1976:-148.914,0,-104.655	1/1:77:5,72:5:180:72:2579:-215.806,-6.62725,0	1/1:71:0,71:0:0:71:2531:-227.962,-21.3731,0	1/1:177:1,175:1:36:175:6269:-560.644,-49.7428,0	1/1:54:3,51:3:108:51:1832:-155.055,-6.18045,0	1/1:76:0,76:0:0:76:2716:-244.682,-22.8783,0	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	0/1:108:56,52:56:1969:52:1858:-134.969,0,-144.972	0/1:30:19,11:19:667:11:396:-26.9518,0,-51.3237	0/1:116:66,50:66:2315:50:1780:-125.546,0,-173.692	1/1:50:0,50:0:0:50:1781:-160.561,-15.0515,0	0/1:109:47,62:47:1671:62:2228:-167.972,0,-117.864	0/1:93:40,53:40:1420:53:1900:-143.281,0,-100.102	0/1:99:43,56:43:1540:56:2016:-151.896,0,-109.091	1/1:60:0,60:0:0:60:2152:-193.911,-18.0618,0	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	0/1:81:34,47:34:1204:47:1692:-128.17,0,-84.2824	0/1:108:47,61:47:1676:61:2188:-164.674,0,-118.616	1/1:128:0,128:0:0:128:4550:-409.663,-38.5318,0	1/1:102:0,102:0:0:102:3662:-329.78,-30.7051,0	1/1:81:0,81:0:0:81:2903:-261.49,-24.3834,0	0/1:105:51,54:51:1802:54:1936:-142.907,0,-130.852	0/1:146:83,61:83:2936:61:2192:-153.837,0,-220.766	1/1:46:0,46:0:0:46:1652:-148.965,-13.8474,0	1/1:87:0,87:0:0:87:3117:-280.755,-26.1896,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	0/1:112:53,59:53:1908:59:2120:-157.353,0,-138.282	0/1:201:96,105:96:3396:105:3760:-278.062,0,-245.349	0/1:86:53,33:53:1862:33:1188:-81.34,0,-141.967	1/1:53:0,53:0:0:53:1903:-171.544,-15.9546,0	1/1:121:0,121:0:0:121:4348:-391.487,-36.4246,0
chr04	32922257	.	G	T	90146.8	PASS	AB=0.444585;ABP=87.4838;AC=143;AF=0.760638;AN=188;AO=4333;CIGAR=1X;DP=6100;DPB=6100;DPRA=0;EPP=9412;EPPR=3837.83;GTI=3;LEN=1;MEANALT=1.01064;MQM=59.9827;MQMR=59.9955;NS=94;NUMALT=1;ODDS=0.853602;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155035;QR=63060;RO=1766;RPL=0;RPP=9412;RPPR=3837.83;RPR=4333;RUN=1;SAF=4333;SAP=9412;SAR=0;SRF=1766;SRP=3837.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:276:-25.1752,-2.40824,0	1/1:80:1,79:1:32:79:2804:-249.4,-20.8831,0	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	1/1:113:0,113:0:0:113:4052:-364.833,-34.0164,0	0/1:35:19,16:19:676:16:572:-41.2774,0,-50.6319	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	0/1:53:33,20:33:1180:20:716:-48.8131,0,-90.5535	1/1:73:0,73:0:0:73:2614:-235.508,-21.9752,0	1/1:62:0,62:0:0:62:2217:-199.793,-18.6639,0	1/1:64:0,64:0:0:64:2278:-205.282,-19.2659,0	0/1:45:24,21:24:864:21:756:-54.8209,0,-64.5362	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	1/1:71:0,71:0:0:71:2546:-229.39,-21.3731,0	1/1:105:0,105:0:0:105:3744:-337.16,-31.6082,0	1/1:79:0,79:0:0:79:2831:-255.028,-23.7814,0	1/1:61:1,60:1:36:60:2156:-190.709,-14.7646,0	0/1:111:65,46:65:2309:46:1635:-114.024,0,-174.655	1/1:53:0,52:0:0:52:1868:-168.039,-15.6536,0	0/1:37:21,16:21:756:16:572:-40.6753,0,-57.2291	0/1:98:58,40:58:2076:40:1440:-100.397,0,-157.61	0/1:85:62,23:62:2212:23:828:-49.2566,0,-173.757	0/1:51:37,14:37:1332:14:504:-30.3456,0,-104.83	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	1/1:235:0,235:0:0:235:8420:-757.802,-70.7421,0	0/1:97:54,43:54:1944:43:1548:-110.413,0,-146.036	1/1:37:0,37:0:0:37:1315:-118.651,-11.1381,0	1/1:64:0,64:0:0:64:2299:-207.171,-19.2659,0	0/1:182:116,66:116:4122:66:2362:-158.051,0,-316.376	0/1:72:44,28:44:1576:28:990:-67.7397,0,-120.457	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:201:105,96:105:3734:96:3452:-250.383,0,-275.752	0/1:131:82,49:82:2925:49:1749:-118.258,0,-224.049	1/1:68:0,68:0:0:68:2420:-218.056,-20.47,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:76:3,73:3:108:73:2628:-226.691,-12.8031,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:62:37,25:37:1309:25:900:-62.6572,0,-99.4457	0/1:64:33,31:33:1188:31:1103:-80.3139,0,-87.9627	0/1:52:21,31:21:748:31:1112:-84.7378,0,-51.9917	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:195:111,84:111:3968:84:2989:-210.541,0,-298.611	0/1:66:37,29:37:1328:29:1040:-74.0464,0,-99.9543	1/1:87:0,87:0:0:87:3120:-281.018,-26.1896,0	0/1:102:64,38:64:2274:38:1364:-92.3547,0,-174.214	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:83:51,32:51:1828:32:1148:-78.6443,0,-139.815	0/1:31:15,16:15:521:16:563:-41.6672,0,-37.8844	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:50:0,50:0:0:50:1791:-161.472,-15.0515,0	1/1:23:0,23:0:0:23:809:-73.1283,-6.92369,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:43:26,17:26:917:17:604:-41.7463,0,-69.9003	1/1:134:1,133:1:36:133:4765:-425.407,-36.7397,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:149:0,149:0:0:149:5332:-480.013,-44.8535,0	0/1:96:53,43:53:1892:43:1536:-109.634,0,-141.659	0/1:59:12,47:12:424:47:1680:-133.726,0,-20.7356	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:44:0,44:0:0:44:1565:-141.14,-13.2453,0	0/1:78:33,45:33:1184:45:1616:-121.759,0,-83.388	0/1:22:8,14:8:288:14:491:-37.8976,0,-19.6447	0/1:90:46,44:46:1641:44:1580:-115.399,0,-120.884	1/1:34:0,34:0:0:34:1201:-108.395,-10.235,0	0/1:78:36,42:36:1280:42:1504:-112.174,0,-92.0229	0/1:100:59,41:59:2104:41:1472:-102.673,0,-159.527	0/1:99:46,53:46:1656:53:1893:-140.844,0,-119.526	1/1:74:1,73:1:36:73:2594:-230.11,-18.6779,0	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/1:57:33,24:33:1176:24:856:-60.2024,0,-88.9891	0/1:57:33,24:33:1165:24:856:-60.2024,0,-87.9963	1/1:102:0,102:0:0:102:3659:-329.513,-30.7051,0	1/1:116:0,116:0:0:116:4159:-374.491,-34.9195,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:86:49,37:49:1751:37:1330:-94.1138,0,-131.98	0/1:149:74,75:74:2656:75:2672:-195.871,0,-194.432	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	1/1:82:0,82:0:0:82:2939:-264.743,-24.6845,0	0/1:37:13,24:13:468:24:860:-66.5837,0,-31.3215	0/1:100:48,52:48:1716:52:1856:-137.217,0,-124.623	0/1:67:50,17:50:1792:17:612:-35.2444,0,-141.393	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:80:0,80:0:0:80:2855:-257.188,-24.0824,0
chr04	32982970	.	A	G	170977	PASS	AB=0.487179;ABP=10.3599;AC=142;AF=0.755319;AN=188;AO=8105;CIGAR=1X;DP=10756;DPB=10756;DPRA=0;EPP=17369.1;EPPR=5621.45;GTI=1;LEN=1;MEANALT=1;MQM=59.5733;MQMR=59.9634;NS=94;NUMALT=1;ODDS=6.43508;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287710;QR=94870;RO=2651;RPL=8078;RPP=17369.1;RPPR=5621.45;RPR=27;RUN=1;SAF=0;SAP=17602.8;SAR=8105;SRF=0;SRP=5759.58;SRR=2651;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:61:0,61:0:0:61:2152:-193.947,-18.3628,0	1/1:84:0,84:0:0:84:2982:-268.57,-25.2865,0	1/1:206:0,206:0:0:206:7285:-655.675,-62.0122,0	1/1:231:0,231:0:0:231:8192:-737.097,-69.5379,0	0/1:100:59,41:59:2124:41:1459:-101.501,0,-161.325	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/1:68:36,32:36:1284:32:1136:-82.0779,0,-95.3934	1/1:209:0,209:0:0:209:7372:-663.409,-62.9153,0	1/1:142:0,142:0:0:142:5040:-453.743,-42.7463,0	1/1:112:0,112:0:0:112:3985:-358.822,-33.7154,0	0/1:82:43,39:43:1535:39:1384:-99.9162,0,-113.757	1/1:102:0,102:0:0:102:3585:-322.795,-30.7051,0	1/1:92:0,92:0:0:92:3259:-293.513,-27.6948,0	1/1:83:0,83:0:0:83:2968:-267.338,-24.9855,0	1/1:67:0,67:0:0:67:2388:-215.148,-20.169,0	1/1:71:0,71:0:0:71:2527:-227.59,-21.3731,0	0/1:45:24,21:24:855:21:744:-53.7371,0,-63.7238	1/1:34:0,34:0:0:34:1216:-109.74,-10.235,0	0/1:42:24,18:24:864:18:631:-44.4688,0,-65.4393	0/1:217:119,98:119:4256:98:3487:-248.709,0,-317.892	0/1:254:103,151:103:3683:151:5343:-404.506,0,-255.211	0/1:112:94,18:94:3368:18:623:-22.6735,0,-269.621	1/1:302:1,301:1:36:301:10688:-958.074,-87.3128,0	1/1:93:1,92:1:36:92:3275:-291.338,-24.3975,0	0/1:144:90,54:90:3216:54:1910:-128.529,0,-246.303	1/1:267:0,267:0:0:267:9507:-854.98,-80.375,0	0/1:358:186,172:186:6633:172:6108:-441.899,0,-489.281	1/1:27:0,27:0:0:27:951:-85.901,-8.12781,0	1/1:282:0,282:0:0:282:10043:-903.765,-84.8905,0	0/1:128:61,67:61:2184:67:2378:-175.745,0,-158.293	0/1:237:119,118:119:4255:118:4183:-305.299,0,-311.785	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:42:21,21:21:756:21:752:-55.3523,0,-55.724	0/1:14:4,10:4:135:10:360:-28.5299,0,-8.26809	0/1:16:6,10:6:216:10:345:-26.5651,0,-14.974	1/1:32:0,32:0:0:32:1132:-102.184,-9.63296,0	0/1:190:98,92:98:3516:92:3265:-236.862,0,-259.453	0/1:120:56,64:56:2007:64:2279:-169.247,0,-144.779	1/1:55:0,55:0:0:55:1943:-175.145,-16.5567,0	1/1:7:0,7:0:0:7:240:-21.9347,-2.10721,0	1/1:131:4,127:4:144:127:4503:-391.978,-26.1213,0	1/1:35:0,35:0:0:35:1248:-112.62,-10.5361,0	0/1:220:119,101:119:4255:101:3603:-258.113,0,-316.77	0/1:70:36,34:36:1296:34:1207:-87.8024,0,-95.8718	0/1:54:21,33:21:756:33:1172:-89.5249,0,-52.1116	1/1:122:0,122:0:0:122:4320:-388.921,-36.7257,0	1/1:141:0,141:0:0:141:4968:-447.179,-42.4452,0	0/1:199:100,99:100:3579:99:3534:-258.346,0,-262.409	0/1:104:49,55:49:1744:55:1964:-145.728,0,-125.937	1/1:184:0,184:0:0:184:6588:-592.905,-55.3895,0	0/1:120:71,49:71:2544:49:1752:-121.835,0,-193.087	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:164:97,67:97:3488:67:2375:-163.854,0,-264.761	0/1:93:42,51:42:1499:51:1804:-134.642,0,-107.163	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:240:0,240:0:0:240:8514:-766.125,-72.2472,0	1/1:55:0,55:0:0:55:1962:-176.115,-16.5567,0	1/1:20:0,20:0:0:20:711:-63.4814,-6.0206,0	1/1:19:0,19:0:0:19:663:-59.9758,-5.71957,0	0/1:116:56,60:56:2008:60:2121:-156.161,0,-146.074	1/1:105:1,104:1:36:104:3678:-327.614,-28.0099,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:258:0,258:0:0:258:9203:-827.162,-77.6657,0	0/1:196:83,113:83:2959:113:4032:-304.007,0,-207.539	0/1:60:6,54:6:216:54:1928:-155.721,0,-1.72871	1/1:129:0,129:0:0:129:4590:-413.153,-38.8329,0	1/1:213:2,211:2:72:211:7462:-664.637,-57.2827,0	1/1:184:0,184:0:0:184:6548:-589.367,-55.3895,0	1/1:61:1,60:1:36:60:2117:-187.186,-14.7646,0	1/1:51:0,51:0:0:51:1816:-163.717,-15.3525,0	0/1:40:28,12:28:1008:12:419:-25.9988,0,-78.9952	0/1:28:19,9:19:671:9:320:-20.7135,0,-52.287	0/1:129:52,77:52:1826:77:2702:-204.588,0,-125.786	1/1:72:0,72:0:0:72:2562:-230.167,-21.6742,0	0/1:257:155,102:155:5547:102:3630:-249.497,0,-421.986	0/1:185:98,87:98:3512:87:3090:-222.608,0,-260.599	0/1:158:65,93:65:2328:93:3298:-249.243,0,-162.217	1/1:121:0,121:0:0:121:4300:-387.058,-36.4246,0	0/1:13:5,8:5:180:8:284:-21.989,0,-12.6387	0/1:119:51,68:51:1828:68:2398:-180.238,0,-128.908	0/1:145:73,72:73:2620:72:2544:-185.528,0,-192.397	1/1:256:0,256:0:0:256:9123:-820.139,-77.0637,0	1/1:64:1,63:1:36:63:2239:-198.139,-15.6676,0	1/1:72:0,72:0:0:72:2542:-228.934,-21.6742,0	0/1:43:24,19:24:860:19:672:-47.8621,0,-64.7775	0/1:134:63,71:63:2255:71:2512:-185.979,0,-162.874	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:78:0,78:0:0:78:2760:-248.609,-23.4803,0	1/1:80:0,80:0:0:80:2827:-254.509,-24.0824,0	0/1:43:24,19:24:856:19:671:-47.7091,0,-64.4168	0/1:134:66,68:66:2372:68:2415:-177.254,0,-173.4	0/1:103:67,36:67:2408:36:1280:-84.4925,0,-185.97	1/1:215:0,215:0:0:215:7599:-683.868,-64.7215,0	1/1:111:0,111:0:0:111:3975:-357.788,-33.4143,0
chr04	32995044	.	GTCG	GTCA	66367	PASS	AB=0.51066;ABP=4.9085;AC=141;AF=0.758065;AN=186;AO=3147;CIGAR=3M1X;DP=4114;DPB=4113.75;DPRA=0;EPP=6836.63;EPPR=2042.02;GTI=3;LEN=1;MEANALT=1.25806;MQM=59.9968;MQMR=60;NS=93;NUMALT=1;ODDS=1.47935;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112343;QR=32945;RO=939;RPL=3147;RPP=6836.63;RPPR=2042.02;RPR=0;RUN=1;SAF=3147;SAP=6836.63;SAR=0;SRF=939;SRP=2042.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:34:0,34:0:0:34:1215:-109.656,-10.235,0	1/1:76:0,76:0:0:76:2712:-244.324,-22.8783,0	1/1:117:0,116:0:0:116:4160:-374.301,-34.9195,0	0/1:25:12,13:12:423:13:468:-34.9339,0,-30.8798	0/1:21:12,8:12:424:8:284:-19.6211,0,-32.2176	0/1:39:16,22:16:569:22:784:-59.1233,0,-39.7812	1/1:70:0,70:0:0:70:2500:-225.253,-21.0721,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:42:0,41:0:0:41:1472:-132.543,-12.3422,0	0/1:20:12,8:12:430:8:284:-19.8828,0,-33.0196	1/1:59:1,56:1:36:56:1989:-175.708,-13.9036,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	1/1:20:0,20:0:0:20:699:-63.2325,-6.0206,0	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:22:0,21:0:0:21:733:-65.9303,-6.32163,0	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	1/1:16:0,16:0:0:16:571:-51.7229,-4.81648,0	0/1:8:3,4:3:108:4:144:-10.8466,0,-7.60813	0/1:54:23,31:23:783:31:1108:-83.7754,0,-54.527	0/1:62:31,30:31:1103:30:1072:-78.0699,0,-80.8573	0/1:57:35,22:35:1227:22:780:-53.3643,0,-93.5728	1/1:35:0,35:0:0:35:1233:-111.272,-10.5361,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:42:21,21:21:750:21:756:-55.724,0,-55.1823	1/1:90:1,87:1:35:87:3116:-277.203,-23.3236,0	0/1:105:62,43:62:2180:43:1540:-107.285,0,-164.857	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	1/1:156:0,156:0:0:156:5596:-503.761,-46.9607,0	0/1:58:32,26:32:1131:26:936:-67.0997,0,-84.6379	0/1:32:17,15:17:592:15:536:-38.9419,0,-43.9724	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:28:14,14:14:477:14:500:-36.9073,0,-34.8248	0/1:14:2,12:2:72:12:417:-33.6458,0,-2.6223	0/1:8:3,5:3:89:5:167:-12.9502,0,-5.89726	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:116:51,64:51:1797:64:2271:-169.674,0,-127.033	0/1:111:42,69:42:1477:69:2445:-186.89,0,-99.8096	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	.:.:.:.:.:.:.:.	1/1:74:1,73:1:36:73:2624:-232.809,-18.6779,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:81:39,41:39:1369:41:1460:-107.254,0,-99.0653	0/1:19:2,17:2:65:17:608:-49.3325,0,-0.453464	0/1:22:13,9:13:447:9:320:-22.5197,0,-33.9345	1/1:65:0,65:0:0:65:2313:-208.429,-19.567,0	1/1:50:0,50:0:0:50:1783:-160.751,-15.0515,0	0/1:101:41,60:41:1429:60:2152:-163.543,0,-98.499	0/1:65:29,36:29:1024:36:1296:-97.377,0,-72.9047	1/1:57:0,56:0:0:56:1993:-179.361,-16.8577,0	0/1:40:22,18:22:775:18:644:-46.2494,0,-58.0304	0/1:13:6,7:6:206:7:252:-19.1156,0,-14.9626	0/1:49:28,21:28:982:21:756:-53.6168,0,-73.9404	0/1:27:4,23:4:132:23:824:-66.3555,0,-4.0773	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:40:28,12:28:985:12:432:-27.18,0,-76.9218	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:89:0,88:0:0:88:3141:-282.555,-26.4906,0	0/1:73:33,40:33:1167:40:1432:-107.202,0,-83.3616	1/1:24:0,23:0:0:23:824:-74.2289,-6.92369,0	1/1:37:2,35:2:62:35:1238:-105.835,-5.24917,0	1/1:81:1,79:1:36:79:2813:-249.81,-20.8438,0	1/1:76:0,70:0:0:70:2512:-226.001,-21.0721,0	1/1:17:0,17:0:0:17:596:-53.9678,-5.11751,0	1/1:28:0,27:0:0:27:949:-85.421,-8.12781,0	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:4:2,2:2:71:2:72:-5.6326,0,-5.53794	0/1:78:44,32:44:1553:32:1148:-80.4623,0,-116.895	1/1:47:0,46:0:0:46:1648:-148.298,-13.8474,0	0/1:57:29,28:29:1005:28:996:-72.7962,0,-73.5995	0/1:58:25,33:25:882:33:1184:-89.4086,0,-62.2376	0/1:43:20,23:20:704:23:812:-60.4566,0,-50.7401	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:18:7,11:7:239:11:396:-30.5642,0,-16.4245	0/1:50:23,27:23:814:27:968:-72.3859,0,-58.5293	0/1:33:20,13:20:713:13:460:-31.8014,0,-54.5633	1/1:80:0,79:0:0:79:2830:-254.579,-23.7814,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:18:9,9:9:310:9:320:-23.7238,0,-22.8145	0/1:70:39,31:39:1384:31:1112:-79.3192,0,-103.786	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:40:0,40:0:0:40:1429:-128.907,-12.0412,0	1/1:28:0,28:0:0:28:987:-89.143,-8.42884,0	0/1:16:8,8:8:282:8:288:-21.4509,0,-20.905	0/1:58:26,32:26:881:32:1140:-85.4495,0,-62.1386	0/1:40:26,14:26:901:14:500:-33.295,0,-69.3612	1/1:85:0,85:0:0:85:3019:-271.942,-25.5876,0	1/1:63:0,63:0:0:63:2248:-202.584,-18.9649,0
chr04	33004437	.	G	A	82543.6	PASS	AB=0.584585;ABP=375.499;AC=45;AF=0.239362;AN=188;AO=3525;CIGAR=1X;DP=11262;DPB=11262;DPRA=1.36149;EPP=7657.45;EPPR=16788.5;GTI=4;LEN=1;MEANALT=1.05357;MQM=59.5994;MQMR=59.9761;NS=94;NUMALT=1;ODDS=1.76478;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125626;QR=274873;RO=7730;RPL=1920;RPP=64.1349;RPPR=16451.5;RPR=1605;RUN=1;SAF=1920;SAP=64.1349;SAR=1605;SRF=7691;SRP=16451.5;SRR=39;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:57:57,0:57:2001:0:0:0,-17.1587,-180.36	0/0:73:71,1:71:2507:1:36:0,-18.393,-222.329	0/0:290:290,0:290:10302:0:0:0,-87.2987,-927.107	0/0:267:267,0:267:9538:0:0:0,-80.375,-857.017	0/1:87:43,44:43:1531:44:1561:-114.591,0,-110.702	0/1:66:22,44:22:792:44:1576:-122.261,0,-51.7377	0/1:192:58,134:58:2084:134:4757:-370.475,0,-130.032	0/0:146:146,0:146:5212:0:0:0,-43.9504,-469.218	0/0:100:98,2:98:3458:2:68:0,-23.6453,-304.972	0/0:87:87,0:87:3097:0:0:0,-26.1896,-278.957	0/1:75:22,53:22:783:53:1887:-147.515,0,-48.2157	0/0:146:146,0:146:5164:0:0:0,-43.9504,-464.903	0/0:96:96,0:96:3388:0:0:0,-28.8989,-305.137	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/0:92:92,0:92:3255:0:0:0,-27.6948,-293.171	0/0:79:79,0:79:2793:0:0:0,-23.7814,-251.611	0/1:98:32,66:32:1135:66:2344:-181.59,0,-72.9571	0/0:29:29,0:29:1012:0:0:0,-8.72987,-91.3885	0/1:70:14,56:14:482:56:1991:-158.28,0,-22.634	0/1:328:121,207:121:4328:207:7366:-564.084,0,-290.958	0/1:206:88,118:88:3117:118:4161:-311.957,0,-218.745	0/1:69:23,45:23:811:45:1610:-124.357,0,-52.4804	0/0:155:154,1:154:5472:1:36:0,-43.0614,-489.012	0/1:107:96,11:96:3432:11:392:-3.40944,0,-276.884	0/1:77:27,50:27:960:50:1788:-138.019,0,-63.537	0/0:294:293,0:293:10449:0:0:0,-88.2018,-940.127	0/1:358:169,189:169:5984:189:6736:-498.276,0,-430.898	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:369:367,2:367:13027:2:68:0,-104.624,-1165.78	0/1:91:50,41:50:1796:41:1476:-105.742,0,-134.529	0/1:133:68,64:68:2407:64:2276:-164.814,0,-176.791	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/1:36:18,18:18:631:18:644:-47.452,0,-46.2786	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:11:6,5:6:216:5:180:-13.2042,0,-16.4792	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:320:113,207:113:3988:207:7368:-566.836,0,-262.781	0/1:127:66,61:66:2342:61:2181:-158.293,0,-172.738	0/0:67:67,0:67:2344:0:0:0,-20.169,-211.219	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:162:161,1:161:5747:1:36:0,-45.1686,-513.749	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5607	0/1:160:85,75:85:2981:75:2684:-193.608,0,-220.357	0/1:100:17,83:17:612:83:2967:-236.876,0,-25.3104	0/1:75:22,53:22:788:53:1890:-147.772,0,-48.6675	0/0:108:108,0:108:3858:0:0:0,-32.5112,-347.415	0/0:112:112,0:112:3976:0:0:0,-33.7154,-358.029	0/1:235:113,122:113:4023:122:4354:-321.29,0,-291.518	0/1:130:60,70:60:2143:70:2499:-185.814,0,-154.003	0/0:158:157,0:157:5610:0:0:0,-47.2617,-504.662	0/1:216:99,117:99:3526:117:4173:-310.722,0,-252.527	0/1:18:3,15:3:108:15:540:-43.4766,0,-4.65663	0/1:159:71,88:71:2525:88:3146:-235.049,0,-179.637	0/1:75:56,19:56:1996:19:680:-38.9519,0,-157.337	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	0/0:136:134,2:134:4796:2:72:0,-34.1034,-424.96	0/0:46:45,1:45:1612:1:36:0,-10.2491,-141.772	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:87:43,44:43:1536:44:1576:-115.783,0,-112.343	0/0:114:114,0:114:4010:0:0:0,-34.3174,-361.09	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:203:202,0:202:7201:0:0:0,-60.8081,-647.784	0/1:202:114,88:114:4062:88:3121:-220.303,0,-304.959	0/0:60:58,2:58:2075:2:72:0,-11.2487,-180.207	0/0:83:83,0:83:2954:0:0:0,-24.9855,-266.093	0/0:190:188,2:188:6715:2:72:0,-50.359,-597.59	0/0:177:173,4:173:6156:4:144:0,-39.9687,-540.782	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.945	0/1:104:25,79:25:892:79:2822:-222.901,0,-49.2926	0/1:44:19,25:19:676:25:882:-66.4507,0,-47.9227	0/1:145:70,75:70:2494:75:2676:-197.399,0,-181.063	0/0:149:149,0:149:5294:0:0:0,-44.8535,-476.591	0/1:272:111,161:111:3919:161:5748:-435.509,0,-271.022	0/1:237:107,130:107:3820:130:4649:-347.173,0,-272.654	0/1:168:82,86:82:2927:86:3069:-225.735,0,-213.092	0/0:115:115,0:115:4112:0:0:0,-34.6184,-370.265	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/1:145:42,103:42:1486:103:3685:-288.167,0,-90.3837	0/1:230:76,154:76:2728:154:5478:-423.887,0,-176.52	0/0:239:239,0:239:8541:0:0:0,-71.9462,-768.603	0/0:54:51,3:51:1790:3:108:0,-6.18045,-151.306	0/0:81:81,0:81:2866:0:0:0,-24.3834,-258.178	0/1:109:23,86:23:820:86:3067:-243.404,0,-41.3102	0/1:215:66,149:66:2339:149:5291:-411.208,0,-146.048	0/0:21:21,0:21:738:0:0:0,-6.32163,-66.7414	0/0:85:85,0:85:2993:0:0:0,-25.5875,-269.41	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.655	0/1:82:34,48:34:1212:48:1709:-129.342,0,-84.7019	0/1:158:61,97:61:2149:97:3446:-262.647,0,-146.113	0/1:132:33,99:33:1180:99:3540:-279.018,0,-66.7721	0/0:143:142,0:142:5056:0:0:0,-42.7463,-454.865	0/0:121:121,0:121:4290:0:0:0,-36.4246,-386.28
chr04	33007391	.	A	T	34887.8	PASS	AB=0.511732;ABP=7.7999;AC=44;AF=0.236559;AN=186;AO=2065;CIGAR=1X;DP=8189;DPB=8189;DPRA=1.24854;EPP=4487.1;EPPR=13281.6;GTI=2;LEN=1;MEANALT=1.06;MQM=60;MQMR=59.9971;NS=93;NUMALT=1;ODDS=0.988754;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73828;QR=218419;RO=6115;RPL=0;RPP=4487.1;RPPR=13281.6;RPR=2065;RUN=1;SAF=2065;SAP=4487.1;SAR=0;SRF=6115;SRP=13281.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.753	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:175:175,0:175:6265:0:0:0,-52.6802,-563.942	0/1:39:23,16:23:824:16:572:-40.0733,0,-62.7431	0/1:42:28,14:28:1000:14:504:-33.0548,0,-77.6721	0/1:161:86,75:86:3035:75:2673:-192.349,0,-224.826	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.657	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/1:69:35,34:35:1260:34:1207:-88.1642,0,-92.9344	0/0:63:63,0:63:2237:0:0:0,-18.9649,-201.592	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:77:76,0:76:2701:0:0:0,-22.8783,-242.974	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.088	0/1:60:37,23:37:1309:23:828:-56.7823,0,-100.048	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:37:28,9:28:1004:9:324:-18.3677,0,-79.5378	0/1:243:114,129:114:4039:129:4628:-343.532,0,-290.546	0/1:162:58,104:58:2054:104:3715:-285.784,0,-136.361	0/1:90:32,58:32:1152:58:2076:-160.018,0,-76.8974	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:115:111,4:111:3964:4:144:0,-21.3048,-343.638	0/1:56:24,32:24:834:32:1144:-86.4118,0,-58.5154	0/0:233:233,0:233:8277:0:0:0,-70.14,-744.939	0/1:163:84,79:84:2994:79:2824:-205.331,0,-220.621	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:241:241,0:241:8572:0:0:0,-72.5482,-771.478	0/1:157:87,70:87:3109:70:2512:-179.07,0,-232.774	0/1:114:45,69:45:1605:69:2453:-186.706,0,-110.421	.:.:.:.:.:.:.:.	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:183:100,83:100:3569:83:2969:-212.353,0,-266.328	0/1:134:63,71:63:2252:71:2510:-185.812,0,-162.605	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:120:118,2:118:4217:2:72:0,-29.2869,-372.873	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:97:43,54:43:1529:54:1940:-145.676,0,-108.701	0/1:65:39,26:39:1396:26:927:-64.1804,0,-106.372	0/1:62:37,25:37:1305:25:892:-61.9358,0,-99.0855	0/0:73:73,0:73:2613:0:0:0,-21.9752,-235.416	0/0:94:94,0:94:3341:0:0:0,-28.2968,-300.907	0/1:121:48,73:48:1716:73:2616:-199.263,0,-118.301	0/1:109:55,54:55:1972:54:1940:-142.064,0,-144.943	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/1:145:83,62:83:2923:62:2190:-153.713,0,-219.653	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/1:144:82,62:82:2913:62:2216:-156.356,0,-219.057	0/1:51:18,33:18:648:33:1180:-91.1555,0,-43.2994	0/1:20:16,4:16:576:4:144:-7.29302,0,-46.1544	0/0:125:124,1:124:4444:1:36:0,-34.0305,-396.532	0/0:33:32,1:32:1118:1:36:0,-6.33571,-97.3252	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:84:58,26:58:2065:26:924:-58.1906,0,-160.833	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.732	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:155:155,0:155:5545:0:0:0,-46.6596,-499.173	0/1:174:66,107:66:2353:107:3808:-290.482,0,-159.589	0/0:78:76,2:76:2728:2:72:0,-16.6436,-238.926	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.897	0/0:137:137,0:137:4897:0:0:0,-41.2411,-440.881	0/0:163:162,1:162:5801:1:36:0,-45.4696,-518.603	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:72:41,30:41:1472:30:1080:-75.7803,0,-111.043	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/1:123:64,59:64:2288:59:2113:-153.412,0,-169.155	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/1:152:47,105:47:1665:105:3756:-292.484,0,-104.379	0/1:146:65,81:65:2336:81:2908:-218.005,0,-166.549	0/1:78:41,37:41:1464:37:1328:-96.3419,0,-108.576	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:78:36,38:36:1273:38:1356:-99.7047,0,-92.2355	0/1:109:47,62:47:1684:62:2216:-166.892,0,-119.035	0/0:206:205,1:205:7306:1:36:0,-58.4139,-653.993	0/0:105:104,0:104:3728:0:0:0,-31.3071,-335.361	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:81:46,35:46:1644:35:1256:-88.9619,0,-123.865	0/1:108:57,51:57:2025:51:1828:-132.29,0,-150.01	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:74:73,0:73:2628:0:0:0,-21.9752,-236.407	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:42:21,21:21:752:21:752:-55.363,0,-55.363	0/1:100:41,59:41:1468:59:2107:-159.796,0,-102.313	0/1:84:27,57:27:968:57:2044:-158.945,0,-62.1508	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:90:90,0:90:3198:0:0:0,-27.0927,-288.041
chr04	33012208	.	TCAAT	TCAAC,CCAAC	407577	PASS	AB=0.543478,0.452374;ABP=117.815,140.763;AC=142,45;AF=0.755319,0.239362;AN=188;AO=11759,3194;CIGAR=4M1X,1X3M1X;DP=15017;DPB=15017;DPRA=0,1.10978;EPP=24659.1,6766.06;EPPR=13.8677;GTI=2;LEN=1,5;MEANALT=2.23404,2.59677;MQM=55.1259,42.479;MQMR=60;NS=94;NUMALT=2;ODDS=3.81738;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=419575,110733;QR=180;RO=5;RPL=5420,1558;RPP=158.971,7.14657;RPPR=3.44459;RPR=6339,1636;RUN=1,1;SAF=5522,1578;SAP=97.4155,3.99202;SAR=6237,1616;SRF=3;SRP=3.44459;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:86:0,86,0:0:0:86,0:3072,0:-275.249,-25.8886,0,-275.249,-25.8886,-275.249	1/1:248:0,248,0:0:0:248,0:8849,0:-793.853,-74.6554,0,-793.853,-74.6554,-793.853	1/1:196:0,196,0:0:0:196,0:7009,0:-627.57,-59.0019,0,-627.57,-59.0019,-627.57	1/1:311:0,309,1:0:0:309,1:11001,33:-987.548,-93.0183,0,-984.881,-90.2869,-984.58	1/2:111:0,61,49:0:0:61,49:2188,1691:-309.14,-131.169,-112.807,-178.073,0,-163.323	1/2:114:0,64,50:0:0:64,50:2273,1697:-314.655,-130.293,-111.027,-184.698,0,-169.646	1/2:214:0,124,90:0:0:124,90:4413,3155:-605.126,-246.165,-208.837,-359.305,0,-332.212	1/1:284:0,283,0:0:0:283,0:10098,0:-904.461,-85.1915,0,-904.461,-85.1915,-904.461	1/1:174:0,173,0:0:0:173,0:6200,0:-555.293,-52.0782,0,-555.293,-52.0782,-555.293	1/1:190:0,189,1:0:0:189,1:6769,36:-607.623,-56.8947,0,-604.843,-53.7721,-604.542	1/2:165:0,86,79:0:0:86,79:3084,2673:-461.343,-210.013,-184.125,-251.672,0,-227.891	1/1:199:0,198,0:0:0:198,0:7059,0:-632.753,-59.6039,0,-632.753,-59.6039,-632.753	1/1:181:0,178,2:0:0:178,2:6326,70:-566.245,-53.5833,0,-560.834,-48.1127,-560.232	1/1:198:0,196,0:0:0:196,0:7005,0:-629.03,-59.0019,0,-629.03,-59.0019,-629.03	1/1:186:0,184,0:0:0:184,0:6573,0:-590.261,-55.3895,0,-590.261,-55.3895,-590.261	1/1:176:0,176,0:0:0:176,0:6253,0:-561.16,-52.9813,0,-561.16,-52.9813,-561.16	1/2:172:0,98,74:0:0:98,74:3483,2587:-484.081,-201.502,-172.001,-282.923,0,-260.646	1/1:142:0,142,0:0:0:142,0:5096,0:-456.976,-42.7463,0,-456.976,-42.7463,-456.976	1/2:136:0,72,64:0:0:72,64:2584,2188:-380.747,-170.78,-149.105,-210.31,0,-191.044	1/2:241:0,138,103:0:0:138,103:4943,3586:-680.785,-278.904,-237.362,-402.225,0,-371.219	1/2:198:0,111,87:0:0:111,87:3976,3035:-561.626,-238.282,-204.868,-323.689,0,-297.5	1/2:59:0,26,33:0:0:26,33:936,1157:-167.572,-91.5244,-83.6976,-76.3985,0,-66.4646	1/1:115:0,111,2:0:0:111,2:3948,62:-354.215,-33.4143,0,-349.297,-28.5028,-348.695	1/1:205:0,200,5:0:0:200,5:7184,177:-643.839,-60.206,0,-630.901,-46.9468,-629.396	1/2:105:0,48,57:0:0:48,57:1716,1996:-295.364,-156.229,-141.779,-139.482,0,-122.324	1/1:346:0,342,1:0:0:342,1:12199,36:-1095.9,-102.952,0,-1093.07,-100.099,-1092.77	1/2:353:0,200,150:0:0:200,150:7158,5191:-986.487,-404.098,-343.892,-582.444,0,-537.289	1/1:102:0,100,0:0:0:100,0:3567,0:-319.859,-30.103,0,-319.859,-30.103,-319.859	1/1:414:0,413,0:0:0:413,0:14748,0:-1324.56,-124.325,0,-1324.56,-124.325,-1324.56	1/2:130:0,69,59:0:0:69,59:2476,2028:-359.972,-158.34,-137.569,-201.662,0,-183.902	1/2:168:0,98,69:0:0:98,69:3520,2385:-472.335,-186.458,-156.957,-285.861,0,-265.09	1/2:8:0,6,2:0:0:6,2:216,70:-23.4327,-5.79068,-3.9845,-17.9843,0,-17.3823	1/2:16:0,12,4:0:0:12,4:428,142:-46.1138,-11.2735,-7.66117,-35.1822,0,-33.9781	1/2:11:0,7,4:0:0:7,4:252,144:-32.2238,-11.7443,-9.63706,-20.8326,0,-19.6284	1/2:18:0,13,5:0:0:13,5:464,180:-51.7686,-14.0392,-10.1258,-38.0723,0,-36.5672	1/1:20:0,20,0:0:0:20,0:716,0:-64.5473,-6.0206,0,-64.5473,-6.0206,-64.5473	1/2:436:0,233,202:0:0:233,202:8283,7060:-1233.03,-558.792,-488.652,-674.294,0,-613.486	1/2:167:0,102,64:0:0:102,64:3632,2247:-469.558,-174.273,-143.568,-295.293,0,-276.028	1/1:165:0,164,0:0:0:164,0:5859,0:-525.974,-49.3689,0,-525.974,-49.3689,-525.974	1/1:4:0,3,0:0:0:3,0:108,0:-9.71721,-0.90309,0,-9.71721,-0.90309,-9.71721	1/1:193:0,192,1:0:0:192,1:6820,36:-611.396,-57.7978,0,-608.686,-54.7526,-608.385	1/1:88:0,87,0:0:0:87,0:3090,0:-277.144,-26.1896,0,-277.144,-26.1896,-277.144	1/2:239:0,127,112:0:0:127,112:4529,3885:-672.123,-303.506,-265.276,-368.961,0,-335.246	1/2:163:0,83,80:0:0:83,80:2950,2801:-459.87,-220.332,-195.347,-239.884,0,-215.802	1/2:120:0,60,59:0:0:60,59:2123,2048:-334.79,-162.545,-144.484,-172.262,0,-154.502	1/1:148:0,147,1:0:0:147,1:5267,36:-473.229,-44.2514,0,-470.32,-40.9856,-470.019	1/1:156:0,155,1:0:0:155,1:5515,35:-494.215,-46.6597,0,-491.368,-43.4634,-491.067	1/2:247:2,127,118:2:72:127,118:4555,4096:-683.924,-314.034,-281.679,-364.602,0,-334.956	1/2:111:0,46,63:0:0:46,63:1648,2179:-303.207,-168.959,-155.112,-134.337,0,-115.372	1/1:174:0,174,0:0:0:174,0:6202,0:-557.102,-52.3792,0,-557.102,-52.3792,-557.102	1/2:203:0,100,102:0:0:100,102:3557,3561:-569.223,-279.684,-249.581,-289.635,0,-258.93	0/2:8:1,1,6:1:36:1,6:36,214:-16.7171,-14.0791,-16.7171,0,-1.73718e-08,-1.13124	1/2:176:0,110,66:0:0:110,66:3945,2314:-494.589,-174.062,-140.949,-320.865,0,-300.997	1/2:47:0,27,20:0:0:27,20:968,706:-133.958,-55.2189,-47.0911,-79.0853,0,-73.0647	1/2:22:0,12,10:0:0:12,10:428,344:-61.6342,-26.8716,-23.2592,-35.1032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chr04	33040829	.	A	G	88374.1	PASS	AB=0.548503;ABP=59.6745;AC=143;AF=0.760638;AN=188;AO=5187;CIGAR=1X;DP=6454;DPB=6454;DPRA=13.8688;EPP=10050.4;EPPR=2665.79;GTI=3;LEN=1;MEANALT=1.05376;MQM=31.675;MQMR=59.9731;NS=94;NUMALT=1;ODDS=0.330896;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185557;QR=45091;RO=1262;RPL=144;RPP=10050.4;RPPR=2665.79;RPR=5043;RUN=1;SAF=0;SAP=11266.4;SAR=5187;SRF=0;SRP=2743.41;SRR=1262;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1076:-75.3679,-9.0309,0	1/1:69:0,69:0:0:69:2466:-175.113,-20.7711,0	1/1:127:0,127:0:0:127:4535:-320.867,-38.2308,0	1/1:228:0,228:0:0:228:8187:-621.079,-68.6348,0	0/1:11:4,7:4:144:7:248:-15.0865,0,-10.0023	0/1:22:8,14:8:273:14:500:-30.2139,0,-18.2775	0/1:111:53,58:53:1904:58:2088:-123.738,0,-138.223	1/1:86:0,86:0:0:86:3092:-217.916,-25.8886,0	1/1:115:0,115:0:0:115:4113:-291.527,-34.6185,0	1/1:98:0,98:0:0:98:3511:-267.011,-29.5009,0	0/1:33:13,20:13:468:20:716:-44.5882,0,-32.5257	1/1:75:0,75:0:0:75:2677:-189.661,-22.5773,0	1/1:53:0,53:0:0:53:1908:-136.32,-15.9546,0	1/1:46:0,46:0:0:46:1656:-120.394,-13.8474,0	1/1:46:0,46:0:0:46:1637:-124.889,-13.8474,0	1/1:40:0,40:0:0:40:1432:-103.307,-12.0412,0	0/1:20:11,9:11:396:9:324:-16.2653,0,-29.9621	1/1:10:0,10:0:0:10:360:-25.5149,-3.0103,0	0/1:10:7,3:7:237:3:108:-4.88873,0,-18.6488	0/1:138:63,75:63:2260:75:2688:-163.056,0,-162.12	0/1:137:66,71:66:2376:71:2522:-143.116,0,-172.856	0/1:60:34,26:34:1216:26:936:-56.6428,0,-91.6848	1/1:94:1,92:1:36:92:3286:-248.774,-24.7302,0	1/1:48:1,47:1:36:47:1665:-117.581,-10.8512,0	0/1:60:29,31:29:1040:31:1107:-62.1496,0,-75.8526	1/1:223:0,223:0:0:223:7985:-635.857,-67.1297,0	0/1:121:65,56:65:2336:56:2012:-112.718,0,-174.075	1/1:5:0,5:0:0:5:180:-13.3527,-1.50515,0	1/1:284:1,283:1:36:283:10114:-797.627,-81.944,0	0/1:117:45,71:45:1597:71:2543:-149.762,0,-108.807	0/1:125:58,67:58:2076:67:2408:-145.247,0,-149.482	0/1:5:2,3:2:72:3:108:-7.27173,0,-5.33157	1/1:6:0,6:0:0:6:216:-15.6498,-1.80618,0	0/1:5:1,4:1:32:4:144:-8.93285,0,-1.69416	0/1:6:4,2:4:144:2:72:-3.55387,0,-11.5074	1/1:18:0,18:0:0:18:620:-44.7024,-5.41854,0	0/1:125:44,81:44:1576:81:2903:-195.401,0,-104.503	0/1:97:35,62:35:1260:62:2215:-131.234,0,-84.5056	1/1:27:0,27:0:0:27:964:-69.9073,-8.12781,0	1/1:3:0,3:0:0:3:108:-8.12774,-0.90309,0	1/1:131:1,130:1:36:130:4662:-334.876,-35.8367,0	1/1:21:0,21:0:0:21:756:-56.4111,-6.32163,0	0/1:74:18,56:18:644:56:1993:-122.241,0,-36.0144	0/1:36:10,26:10:345:26:936:-61.0245,0,-20.5437	0/1:38:23,15:23:819:15:540:-30.1026,0,-62.5924	1/1:68:0,68:0:0:68:2421:-193.004,-20.47,0	1/1:88:0,88:0:0:88:3160:-221.275,-26.4906,0	0/1:82:36,46:36:1296:46:1648:-99.5275,0,-92.2595	0/1:80:29,51:29:1044:51:1802:-116.091,0,-70.1924	1/1:99:0,99:0:0:99:3539:-270.751,-29.802,0	0/1:109:63,46:63:2260:46:1652:-98.9298,0,-170.85	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:101:47,54:47:1679:54:1940:-107.382,0,-120.992	0/1:68:36,32:36:1258:32:1129:-70.8518,0,-93.0482	0/1:5:3,2:3:108:2:72:-3.8549,0,-8.57002	1/1:121:0,120:0:0:120:4287:-312.315,-36.1236,0	1/1:36:0,36:0:0:36:1292:-98.2095,-10.8371,0	1/1:1:0,1:0:0:1:36:-3.18762,-0.30103,0	1/1:8:0,8:0:0:8:288:-23.2697,-2.40824,0	0/1:84:27,57:27:957:57:2020:-123.308,0,-61.1573	1/1:82:0,82:0:0:82:2920:-225.149,-24.6845,0	1/1:5:0,5:0:0:5:165:-13.0232,-1.50515,0	1/1:121:1,120:1:36:120:4291:-340.498,-32.8761,0	0/1:85:50,35:50:1800:35:1256:-71.4838,0,-136.695	1/1:61:2,59:2:72:59:2116:-147.367,-11.5261,0	1/1:30:0,30:0:0:30:1072:-81.1616,-9.0309,0	1/1:99:0,99:0:0:99:3514:-268.461,-29.802,0	1/1:162:0,162:0:0:162:5796:-440.514,-48.7669,0	1/1:15:0,15:0:0:15:536:-39.3523,-4.51545,0	1/1:66:0,66:0:0:66:2376:-167.955,-19.868,0	0/1:32:9,23:9:324:23:824:-56.4888,0,-19.8729	0/1:21:13,8:13:445:8:284:-16.1923,0,-34.0537	0/1:192:64,128:64:2273:128:4600:-265.532,0,-147.033	1/1:74:0,74:0:0:74:2660:-187.403,-22.2762,0	0/1:121:51,70:51:1823:70:2516:-146.392,0,-127.926	0/1:100:61,38:61:2192:38:1351:-72.3754,0,-167.437	0/1:42:14,28:14:489:28:977:-58.3717,0,-31.6956	1/1:97:0,97:0:0:97:3480:-245.268,-29.1999,0	0/1:14:9,5:9:324:5:180:-8.43671,0,-25.2914	0/1:38:18,20:18:648:20:711:-40.8451,0,-47.2127	0/1:60:35,25:35:1241:25:896:-44.2784,0,-93.9307	1/1:233:0,232:0:0:232:8336:-634.702,-69.839,0	1/1:48:0,48:0:0:48:1711:-131.113,-14.4494,0	1/1:40:0,40:0:0:40:1429:-108.814,-12.0412,0	0/1:22:14,8:14:496:8:273:-14.7578,0,-38.3492	0/1:66:29,37:29:1044:37:1320:-82.3033,0,-74.4068	1/1:16:0,16:0:0:16:576:-40.9057,-4.81648,0	1/1:52:0,52:0:0:52:1848:-134.628,-15.6536,0	1/1:56:0,56:0:0:56:2012:-142.38,-16.8577,0	0/1:17:8,9:8:284:9:324:-18.6107,0,-20.7858	0/1:49:19,30:19:675:30:1057:-62.9319,0,-46.3265	0/1:34:22,12:22:788:12:432:-22.1121,0,-61.0098	1/1:77:0,77:0:0:77:2760:-209.308,-23.1793,0	1/1:38:0,38:0:0:38:1355:-104.389,-11.4391,0
chr04	33047728	.	A	G	182679	PASS	AB=0.546398;ABP=89.4563;AC=142;AF=0.763441;AN=186;AO=8338;CIGAR=1X;DP=10472;DPB=10472;DPRA=0;EPP=16980.4;EPPR=4439.13;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9753;MQMR=60;NS=93;NUMALT=1;ODDS=1.37603;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=297436;QR=76093;RO=2130;RPL=131;RPP=16988.8;RPPR=4430.63;RPR=8207;RUN=1;SAF=8337;SAP=18100.1;SAR=1;SRF=2129;SRP=4619.56;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:1,40:1:36:40:1419:-124.398,-8.74396,0	1/1:193:0,193:0:0:193:6895:-620.619,-58.0988,0	1/1:107:0,107:0:0:107:3825:-344.447,-32.2102,0	1/1:375:0,375:0:0:375:13396:-1205.34,-112.886,0	0/1:74:29,45:29:1032:45:1611:-123.003,0,-70.9173	0/1:73:29,44:29:1032:44:1572:-119.796,0,-71.2183	0/1:121:37,84:37:1317:84:3020:-235.605,0,-82.4052	1/1:199:1,198:1:36:198:7100:-635.459,-56.3067,0	1/1:102:0,102:0:0:102:3627:-326.634,-30.7051,0	1/1:146:0,146:0:0:146:5193:-467.508,-43.9504,0	0/1:60:41,19:41:1460:19:684:-43.8285,0,-113.634	1/1:97:0,97:0:0:97:3453:-310.982,-29.1999,0	1/1:75:0,75:0:0:75:2687:-242.074,-22.5773,0	1/1:88:0,88:0:0:88:3132:-282.105,-26.4906,0	1/1:69:0,69:0:0:69:2455:-221.205,-20.7711,0	1/1:78:0,78:0:0:78:2771:-249.63,-23.4803,0	0/1:87:38,49:38:1364:49:1743:-130.964,0,-96.8711	1/1:70:1,69:1:21:69:2480:-221.353,-18.9722,0	0/1:30:22,8:22:784:8:288:-17.2365,0,-61.853	0/1:207:94,113:94:3364:113:4033:-300.844,0,-240.663	0/1:184:68,116:68:2417:116:4156:-318.833,0,-162.395	0/1:110:58,52:58:2057:52:1849:-133.575,0,-152.286	1/1:90:0,90:0:0:90:3195:-287.772,-27.0927,0	1/1:170:2,168:2:72:168:5974:-530.932,-44.3384,0	0/1:81:31,50:31:1112:50:1768:-135.02,0,-76.0079	1/1:498:1,497:1:36:497:17700:-1589,-146.315,0	0/1:206:93,113:93:3328:113:4031:-300.966,0,-237.726	1/1:51:0,51:0:0:51:1798:-162.1,-15.3525,0	1/1:232:1,231:1:36:231:8235:-737.54,-66.2407,0	0/1:126:49,77:49:1737:77:2748:-209.633,0,-118.683	0/1:62:31,31:31:1108:31:1112:-81.7265,0,-81.3671	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:13:3,10:3:104:10:360:-28.8309,0,-5.78942	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:3,5:3:104:5:171:-13.3172,0,-7.29457	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:248:136,112:136:4872:112:3993:-284.905,0,-363.977	0/1:209:74,135:74:2632:135:4804:-369.601,0,-174.213	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	.:.:.:.:.:.:.:.	1/1:199:10,189:10:360:189:6768:-576.449,-27.1607,0	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	0/1:131:43,88:43:1536:88:3129:-242.401,0,-99.0982	0/1:95:51,44:51:1820:44:1576:-113.534,0,-135.483	0/1:95:45,50:45:1612:50:1774:-131.344,0,-116.772	1/1:71:1,70:1:36:70:2482:-220.034,-17.7749,0	1/1:98:0,98:0:0:98:3491:-314.402,-29.5009,0	0/1:228:96,132:96:3428:132:4673:-352.008,0,-240.1	0/1:138:40,98:40:1436:98:3485:-272.319,0,-87.9955	1/1:231:1,228:1:36:228:8150:-729.916,-65.6974,0	0/1:145:60,85:60:2137:85:3048:-230.9,0,-148.947	0/1:12:3,9:3:104:9:315:-25.0749,0,-6.09045	0/1:110:57,53:57:2048:53:1895:-137.714,0,-151.478	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	1/1:161:1,160:1:36:160:5730:-512.218,-44.8676,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:60:35,24:35:1248:24:864:-59.9538,0,-94.5044	1/1:137:0,137:0:0:137:4866:-438.093,-41.2411,0	1/1:9:0,9:0:0:9:324:-29.4605,-2.70927,0	1/1:281:2,279:2:72:279:9973:-890.65,-77.7527,0	0/1:237:95,142:95:3399:142:5081:-386.088,0,-234.78	1/1:123:5,118:5:180:118:4209:-362.437,-20.4746,0	1/1:106:0,106:0:0:106:3784:-340.753,-31.9092,0	1/1:219:1,218:1:36:218:7766:-695.373,-62.3273,0	1/1:131:1,130:1:36:130:4612:-411.644,-35.8367,0	1/1:32:0,32:0:0:32:1134:-102.367,-9.63296,0	1/1:101:0,101:0:0:101:3611:-325.196,-30.404,0	0/1:157:72,85:72:2549:85:3035:-226.118,0,-182.398	0/1:23:18,5:18:633:5:180:-9.62837,0,-50.3714	0/1:91:37,54:37:1313:54:1932:-146.763,0,-91.076	1/1:83:0,83:0:0:83:2973:-267.803,-24.9855,0	0/1:134:69,65:69:2476:65:2328:-169.442,0,-182.755	0/1:148:58,90:58:2084:90:3228:-246.189,0,-143.278	0/1:124:61,63:61:2176:63:2237:-164.265,0,-158.779	1/1:132:1,131:1:36:131:4695:-419.111,-36.1377,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:154:73,81:73:2620:81:2908:-215.596,0,-189.689	0/1:84:41,43:41:1461:43:1540:-113.607,0,-106.498	1/1:216:2,214:2:72:214:7658:-682.418,-58.1858,0	1/1:123:0,123:0:0:123:4386:-394.913,-37.0267,0	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	0/1:107:56,51:56:2016:51:1823:-132.14,0,-149.503	0/1:187:97,90:97:3472:90:3195:-231.478,0,-256.399	1/1:42:0,42:0:0:42:1487:-134.122,-12.6433,0	1/1:96:0,96:0:0:96:3389:-305.226,-28.8989,0	1/1:96:0,96:0:0:96:3427:-308.644,-28.8989,0	0/1:43:21,22:21:752:22:760:-55.77,0,-55.062	0/1:90:45,45:45:1616:45:1574:-114.854,0,-118.637	0/1:88:64,24:64:2296:24:852:-50.5088,0,-180.41	1/1:96:1,94:1:36:94:3349:-298.028,-25.3594,0	1/1:134:1,133:1:36:133:4752:-424.238,-36.7397,0
chr04	33047735	.	G	A	182944	PASS	AB=0.553487;ABP=119.157;AC=142;AF=0.763441;AN=186;AO=8524;CIGAR=1X;DP=10643;DPB=10643;DPRA=0;EPP=18443.2;EPPR=4593.51;GTI=4;LEN=1;MEANALT=1.01075;MQM=59.9666;MQMR=60;NS=93;NUMALT=1;ODDS=0.17893;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=305379;QR=75796;RO=2118;RPL=8515;RPP=18434.6;RPPR=4584.83;RPR=9;RUN=1;SAF=8523;SAP=18504;SAR=1;SRF=2117;SRP=4593.51;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:1,43:1:36:43:1536:-134.935,-9.64705,0	1/1:200:0,200:0:0:200:7172:-645.534,-60.206,0	1/1:109:0,109:0:0:109:3890:-350.292,-32.8123,0	1/1:379:0,379:0:0:379:13583:-1222.24,-114.09,0	0/1:74:28,46:28:1008:46:1628:-124.531,0,-68.7601	0/1:72:28,44:28:1004:44:1584:-121.177,0,-69.0017	0/1:124:37,87:37:1320:87:3124:-244.058,0,-81.7742	1/1:207:1,206:1:36:206:7393:-661.814,-58.7149,0	1/1:105:0,105:0:0:105:3766:-339.137,-31.6082,0	1/1:151:0,151:0:0:151:5402:-486.31,-45.4555,0	0/1:62:39,23:39:1392:23:828:-56.1803,0,-106.915	1/1:97:0,97:0:0:97:3479:-313.32,-29.1999,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:91:0,91:0:0:91:3267:-294.249,-27.3937,0	1/1:71:0,71:0:0:71:2556:-230.29,-21.3731,0	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	0/1:87:38,49:38:1345:49:1764:-132.854,0,-95.1585	1/1:71:1,70:1:36:70:2508:-222.374,-17.7749,0	0/1:31:23,8:23:815:8:284:-16.5714,0,-64.3388	0/1:208:93,115:93:3332:115:4120:-308.37,0,-237.483	0/1:187:69,118:69:2476:118:4219:-323.597,0,-166.801	0/1:109:57,52:57:2032:52:1872:-135.947,0,-150.34	1/1:91:0,91:0:0:91:3238:-291.638,-27.3937,0	1/1:175:2,173:2:72:173:6204:-551.618,-45.8435,0	0/1:85:33,52:33:1184:52:1834:-139.749,0,-81.2808	1/1:505:1,504:1:36:504:17985:-1614.62,-148.422,0	0/1:214:94,120:94:3368:120:4292:-322.009,0,-238.916	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:241:1,240:1:36:240:8600:-770.336,-68.95,0	0/1:129:52,77:52:1864:77:2741:-208.099,0,-129.207	0/1:63:32,31:32:1152:31:1112:-81.4255,0,-85.0253	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:2,5:2:72:5:180:-14.2182,0,-4.47624	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:247:133,114:133:4759:114:4092:-294.11,0,-354.113	0/1:217:76,141:76:2732:141:5048:-389.142,0,-180.799	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	.:.:.:.:.:.:.:.	1/1:204:9,195:9:324:195:6997:-600.284,-31.9043,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:132:44,88:44:1561:88:3149:-243.898,0,-101.044	0/1:96:51,45:51:1828:45:1620:-117.191,0,-135.902	0/1:95:44,51:44:1576:51:1824:-135.843,0,-113.534	1/1:79:1,78:1:36:78:2754:-244.502,-20.1831,0	1/1:100:0,100:0:0:100:3562:-320.786,-30.103,0	0/1:230:96,134:96:3428:134:4785:-361.476,0,-239.498	0/1:142:39,103:39:1400:103:3695:-290.005,0,-83.5529	1/1:235:0,235:0:0:235:8418:-757.612,-70.7421,0	0/1:148:59,89:59:2112:89:3196:-243.31,0,-145.797	0/1:13:3,10:3:104:10:352:-28.1048,0,-5.78942	0/1:110:57,53:57:2052:53:1908:-138.884,0,-151.838	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:166:1,165:1:36:165:5910:-528.409,-46.3727,0	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:63:36,27:36:1292:27:972:-68.8248,0,-97.6189	1/1:141:0,141:0:0:141:5068:-456.262,-42.4452,0	1/1:9:0,9:0:0:9:324:-29.4951,-2.70927,0	1/1:282:1,281:1:36:281:10066:-902.249,-81.2922,0	0/1:238:94,144:94:3360:144:5164:-393.254,0,-230.972	1/1:122:6,116:6:216:116:4167:-355.418,-16.9351,0	1/1:108:0,108:0:0:108:3834:-345.257,-32.5112,0	1/1:225:2,223:2:72:223:8012:-714.245,-60.895,0	1/1:132:1,131:1:36:131:4704:-419.918,-36.1377,0	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	1/1:102:0,102:0:0:102:3664:-329.963,-30.7051,0	0/1:158:70,88:70:2508:88:3141:-235.351,0,-178.409	0/1:23:17,6:17:612:6:204:-11.7697,0,-48.4897	0/1:93:38,55:38:1360:55:1972:-149.759,0,-94.7048	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	0/1:131:65,66:65:2332:66:2361:-173.313,0,-170.705	0/1:146:57,89:57:2029:89:3188:-243.193,0,-138.93	0/1:127:63,64:63:2264:64:2296:-168.67,0,-165.792	1/1:136:1,135:1:36:135:4833:-431.524,-37.3418,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:155:71,84:71:2544:84:3006:-224.112,0,-182.551	0/1:84:41,43:41:1456:43:1540:-113.607,0,-106.049	1/1:220:2,218:2:63:218:7832:-698.921,-60.2434,0	1/1:126:0,126:0:0:126:4513:-406.328,-37.9298,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:105:53,52:53:1895:52:1872:-137.151,0,-139.219	0/1:190:96,94:96:3410:94:3362:-245.171,0,-249.92	1/1:43:0,43:0:0:43:1545:-139.325,-12.9443,0	1/1:96:0,96:0:0:96:3448:-310.532,-28.8989,0	1/1:99:0,99:0:0:99:3560:-320.607,-29.802,0	0/1:41:19,22:19:684:22:781:-58.2703,0,-49.5481	0/1:92:47,45:47:1683:45:1616:-118.035,0,-124.062	0/1:91:67,24:67:2408:24:860:-50.3272,0,-189.582	1/1:95:1,94:1:36:94:3380:-300.816,-24.9996,0	1/1:135:0,135:0:0:135:4860:-437.55,-40.6391,0
chr04	33063786	.	T	A	56364.5	PASS	AB=0.508709;ABP=4.29627;AC=139;AF=0.747312;AN=186;AO=2720;CIGAR=1X;DP=3689;DPB=3689;DPRA=13.3551;EPP=5909.42;EPPR=2102.82;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.507;MQMR=59.9224;NS=93;NUMALT=1;ODDS=0.664245;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97047;QR=34087;RO=967;RPL=0;RPP=5909.42;RPPR=2102.82;RPR=2720;RUN=1;SAF=0;SAP=5909.42;SAR=2720;SRF=0;SRP=2102.82;SRR=967;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:572:-51.8101,-4.81648,0	1/1:35:0,35:0:0:35:1252:-112.949,-10.5361,0	1/1:46:0,46:0:0:46:1644:-148.232,-13.8474,0	1/1:66:1,65:1:21:65:2328:-207.529,-17.768,0	0/1:32:20,12:20:712:12:432:-29.579,0,-54.7737	0/1:23:7,16:7:252:16:576:-45.2431,0,-16.1053	0/1:46:27,19:27:941:19:684:-48.0406,0,-71.1534	1/1:50:1,49:1:36:49:1760:-155.077,-11.4532,0	1/1:70:0,70:0:0:70:2482:-223.578,-21.0721,0	1/1:41:0,41:0:0:41:1457:-131.42,-12.3422,0	0/1:52:24,28:24:852:28:1008:-75.3781,0,-61.3445	1/1:46:0,46:0:0:46:1643:-148.15,-13.8474,0	1/1:41:0,41:0:0:41:1472:-132.743,-12.3422,0	1/1:75:0,75:0:0:75:2673:-240.771,-22.5773,0	1/1:33:0,33:0:0:33:1180:-106.502,-9.93399,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:36:18,18:18:640:18:640:-47.0808,0,-47.0922	1/1:22:0,22:0:0:22:787:-71.1481,-6.62266,0	0/1:32:16,16:16:564:16:561:-40.9474,0,-41.4573	0/1:58:32,26:32:1148:26:932:-66.7368,0,-86.1701	0/1:72:26,46:26:909:46:1635:-125.657,0,-60.4446	0/1:28:19,9:19:661:9:324:-21.077,0,-51.3819	1/1:15:0,15:0:0:15:540:-48.9181,-4.51545,0	0/1:32:3,29:3:104:29:1035:-83.818,0,-0.069845	0/1:17:2,15:2:72:15:536:-43.4434,0,-1.71921	1/1:91:0,91:0:0:91:3247:-292.445,-27.3937,0	0/1:62:34,28:34:1201:28:1008:-72.3679,0,-89.7298	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:70:0,70:0:0:70:2508:-225.965,-21.0721,0	0/1:30:17,13:17:589:13:468:-33.4241,0,-44.3024	0/1:39:26,13:26:920:13:455:-29.5394,0,-71.375	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:12:8,4:8:269:4:144:-9.70126,0,-20.9238	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:13:7,6:7:252:6:216:-15.8688,0,-19.1156	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:137:65,72:65:2299:72:2536:-187.244,0,-165.928	0/1:61:24,37:24:852:37:1324:-101.037,0,-58.6294	1/1:51:1,50:1:36:50:1784:-157.228,-11.7543,0	1/1:4:0,4:0:0:4:144:-13.3005,-1.20412,0	1/1:43:0,43:0:0:43:1544:-139.216,-12.9443,0	1/1:30:0,30:0:0:30:1080:-97.4994,-9.0309,0	0/1:101:36,65:36:1269:65:2328:-178.576,0,-84.1067	0/1:31:12,19:12:417:19:664:-50.7502,0,-28.5283	0/1:30:15,15:15:532:15:536:-39.5439,0,-39.1371	1/1:47:0,47:0:0:47:1684:-151.844,-14.1484,0	1/1:36:0,36:0:0:36:1288:-116.188,-10.8371,0	0/1:51:30,21:30:1072:21:748:-52.2918,0,-81.4399	0/1:21:13,8:13:468:8:284:-19.5729,0,-36.138	1/1:31:0,31:0:0:31:1112:-100.348,-9.33193,0	0/1:57:34,23:34:1220:23:824:-57.3237,0,-92.9472	0/1:3:1,2:1:36:2:72:-5.93117,0,-2.69518	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:14:6,8:6:216:8:278:-21.1424,0,-15.5761	0/1:5:1,4:1:36:4:144:-11.8001,0,-2.09312	1/1:39:0,39:0:0:39:1395:-125.822,-11.7402,0	1/1:14:0,14:0:0:14:497:-44.9767,-4.21442,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:24:9,15:9:324:15:525:-40.3533,0,-22.2811	1/1:76:0,76:0:0:76:2724:-245.398,-22.8783,0	.:.:.:.:.:.:.:.	1/1:57:0,57:0:0:57:2017:-181.651,-17.1587,0	0/1:57:26,31:26:898:31:1112:-83.2303,0,-63.971	1/1:23:0,22:0:0:22:788:-71.0237,-6.62266,0	1/1:24:0,24:0:0:24:855:-77.2455,-7.22472,0	1/1:61:0,61:0:0:61:2167:-195.292,-18.3628,0	1/1:49:2,47:2:72:47:1671:-143.835,-7.91375,0	1/1:12:0,12:0:0:12:428:-38.8542,-3.61236,0	1/1:33:0,33:0:0:33:1179:-106.407,-9.93399,0	0/1:47:18,29:18:602:29:1031:-78.9533,0,-40.3447	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:80:38,42:38:1360:42:1504:-111.548,0,-98.6159	1/1:10:0,10:0:0:10:356:-32.3779,-3.0103,0	0/1:125:79,46:79:2767:46:1644:-110.49,0,-211.632	0/1:44:20,24:20:705:24:860:-64.4663,0,-50.5275	0/1:46:19,27:19:665:27:945:-71.4982,0,-46.3254	1/1:29:0,29:0:0:29:1040:-93.8449,-8.72987,0	0/1:11:7,4:7:244:4:144:-10.0023,0,-18.9881	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:23:15,8:15:540:8:288:-19.3437,0,-42.0128	1/1:39:0,39:0:0:39:1378:-124.312,-11.7402,0	1/1:68:0,68:0:0:68:2413:-217.414,-20.47,0	1/1:29:0,29:0:0:29:1020:-92.1094,-8.72987,0	0/1:54:25,29:25:871:29:1044:-78.0145,0,-62.4498	0/1:107:48,59:48:1697:59:2116:-158.491,0,-120.802	1/1:24:0,24:0:0:24:847:-76.5487,-7.22472,0	1/1:45:0,45:0:0:45:1596:-143.93,-13.5464,0	1/1:32:0,32:0:0:32:1137:-102.629,-9.63296,0	0/1:38:20,18:20:704:18:648:-47.2127,0,-52.2454	0/1:82:37,45:37:1296:45:1600:-118.966,0,-92.2539	0/1:53:39,14:39:1350:14:500:-29.3816,0,-105.839	1/1:20:0,20:0:0:20:716:-64.6789,-6.0206,0	1/1:37:0,36:0:0:36:1277:-114.865,-10.8371,0
chr04	33073862	.	G	A	49430.6	PASS	AB=0.395784;ABP=437.06;AC=143;AF=0.760638;AN=188;AO=5024;CIGAR=1X;DP=7823;DPB=7823;DPRA=0;EPP=10912.5;EPPR=6074.45;GTI=6;LEN=1;MEANALT=1.03191;MQM=24.8041;MQMR=24.9696;NS=94;NUMALT=1;ODDS=0.291394;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180172;QR=99904;RO=2796;RPL=0;RPP=10912.5;RPPR=6074.45;RPR=5024;RUN=1;SAF=5024;SAP=10912.5;SAR=0;SRF=2796;SRP=6074.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1252:-77.8717,-10.5361,0	1/1:66:0,66:0:0:66:2342:-145.9,-19.868,0	1/1:64:0,64:0:0:64:2296:-142.788,-19.2659,0	1/1:85:0,85:0:0:85:3029:-180.745,-25.5876,0	0/1:92:50,42:50:1800:42:1508:-65.5932,0,-79.2472	0/1:73:41,32:41:1464:32:1152:-47.9927,0,-70.6679	0/1:110:60,49:60:2156:49:1764:-73.4101,0,-102.44	1/1:86:1,85:1:36:85:3037:-187.617,-23.3299,0	1/1:86:0,86:0:0:86:3096:-190.494,-25.8886,0	1/1:53:0,53:0:0:53:1888:-110.84,-15.9546,0	0/1:69:45,24:45:1607:24:864:-30.0331,0,-79.4963	1/1:62:0,62:0:0:62:2228:-138.852,-18.6639,0	1/1:35:0,35:0:0:35:1260:-78.5676,-10.5361,0	1/1:52:0,52:0:0:52:1864:-115.182,-15.6536,0	1/1:43:0,43:0:0:43:1544:-93.0886,-12.9443,0	1/1:32:0,32:0:0:32:1148:-72.069,-9.63296,0	0/1:58:31,27:31:1103:27:972:-42.8157,0,-53.0834	1/1:31:1,30:1:36:30:1080:-63.7478,-5.74545,0	0/1:34:16,18:16:572:18:644:-29.2576,0,-26.122	0/1:167:105,62:105:3772:62:2228:-83.3906,0,-187.15	0/1:150:95,55:95:3401:55:1968:-75.2083,0,-152.316	0/1:67:53,14:53:1862:14:500:-12.2759,0,-105.569	1/1:81:0,81:0:0:81:2904:-173.068,-24.3834,0	1/1:118:11,107:11:396:107:3840:-209.414,-9.10469,0	0/1:61:33,28:33:1188:28:993:-44.239,0,-52.3155	1/1:290:0,290:0:0:290:10409:-666.916,-87.2987,0	0/1:156:96,60:96:3429:60:2152:-84.9633,0,-154.778	1/1:21:0,21:0:0:21:756:-46.8712,-6.32163,0	1/1:167:0,167:0:0:167:5970:-377.847,-50.272,0	0/1:138:87,51:87:3079:51:1836:-69.2876,0,-141.871	0/1:146:89,57:89:3177:57:2040:-79.2805,0,-155.791	0/1:55:37,18:37:1328:18:644:-24.6194,0,-57.1229	0/1:68:36,32:36:1296:32:1133:-50.3204,0,-52.853	0/1:28:16,12:16:576:12:432:-18.4604,0,-25.8145	0/1:101:72,29:72:2531:29:1044:-34.2289,0,-118.729	1/1:31:0,31:0:0:31:1116:-66.9657,-9.33193,0	0/1:142:73,68:73:2620:68:2444:-110.547,0,-135.968	0/1:244:165,79:165:5905:79:2825:-101.028,0,-273.524	1/1:55:0,55:0:0:55:1976:-121.474,-16.5567,0	1/1:19:0,19:0:0:19:669:-42.992,-5.71957,0	1/1:82:2,80:2:72:80:2865:-171.57,-20.1748,0	1/1:23:0,23:0:0:23:828:-52.2125,-6.92369,0	0/1:162:81,81:81:2867:81:2904:-129.281,0,-121.396	0/1:22:12,10:12:432:10:360:-14.9765,0,-20.9261	0/1:60:32,28:32:1129:28:1004:-41.9549,0,-55.0955	1/1:74:0,74:0:0:74:2641:-168.419,-22.2762,0	1/1:73:0,73:0:0:73:2628:-161.325,-21.9752,0	0/1:195:110,85:110:3921:85:3048:-121.527,0,-191.924	0/1:116:74,42:74:2652:42:1512:-55.2044,0,-133.467	1/1:61:0,61:0:0:61:2188:-131.269,-18.3628,0	0/1:185:108,77:108:3853:77:2764:-118.19,0,-206.026	0/1:52:41,11:41:1464:11:392:-8.04794,0,-74.6373	0/1:134:65,69:65:2332:69:2484:-112.671,0,-107.096	0/1:36:22,14:22:788:14:504:-21.6585,0,-42.3095	0/1:35:29,6:29:1040:6:216:-3.03193,0,-47.4618	1/1:81:0,81:0:0:81:2916:-177.635,-24.3834,0	1/1:49:0,49:0:0:49:1764:-104.727,-14.7505,0	1/1:10:0,10:0:0:10:360:-23.6683,-3.0103,0	1/1:36:0,36:0:0:36:1273:-82.1173,-10.8371,0	0/1:98:53,45:53:1889:45:1620:-70.6554,0,-81.3059	1/1:74:1,73:1:36:73:2628:-154.009,-18.6975,0	1/1:14:0,14:0:0:14:504:-30.2259,-4.21442,0	1/1:105:0,105:0:0:105:3761:-237.364,-31.6082,0	0/1:189:122,67:122:4349:67:2389:-88.0462,0,-218.888	1/1:47:1,46:1:36:46:1644:-100.626,-11.7749,0	1/1:35:0,35:0:0:35:1256:-74.8824,-10.5361,0	1/1:85:0,85:0:0:85:3056:-181.816,-25.5876,0	1/1:119:1,117:1:36:117:4204:-250.743,-34.64,0	1/1:20:0,20:0:0:20:716:-43.3212,-6.0206,0	1/1:70:0,70:0:0:70:2516:-154.466,-21.0721,0	0/1:70:39,31:39:1391:31:1116:-49.5347,0,-74.3243	0/1:41:22,19:22:788:19:684:-29.8194,0,-38.5255	0/1:155:89,66:89:3200:66:2368:-100.112,0,-150.011	1/1:51:0,51:0:0:51:1828:-113.395,-15.3525,0	0/1:230:120,110:120:4277:110:3941:-177.531,0,-180.68	0/1:117:77,40:77:2760:40:1440:-49.9403,0,-142.189	0/1:137:97,40:97:3469:40:1440:-47.2227,0,-171.812	1/1:36:0,36:0:0:36:1292:-79.4838,-10.8371,0	0/1:44:29,15:29:1044:15:536:-19.563,0,-51.2981	0/1:83:58,25:58:2069:25:900:-29.9031,0,-98.0033	0/1:85:53,32:53:1900:32:1129:-43.9078,0,-95.1476	1/1:203:0,203:0:0:203:7296:-435.907,-61.1091,0	1/1:78:0,78:0:0:78:2804:-166.182,-23.4803,0	1/1:24:0,24:0:0:24:860:-51.7238,-7.22472,0	0/1:51:30,21:30:1080:21:756:-29.5723,0,-53.2175	0/1:108:65,43:65:2321:43:1548:-59.41,0,-115.417	1/1:27:0,27:0:0:27:972:-60.2755,-8.12781,0	1/1:66:0,66:0:0:66:2372:-143.943,-19.868,0	1/1:53:0,53:0:0:53:1908:-114.49,-15.9546,0	0/1:45:24,21:24:864:21:752:-32.1503,0,-38.1267	0/1:139:89,50:89:3196:50:1796:-68.049,0,-148.722	0/1:53:37,16:37:1315:16:576:-18.4616,0,-68.2553	1/1:57:0,57:0:0:57:2037:-121.58,-17.1587,0	1/1:57:0,57:0:0:57:2029:-121.177,-17.1587,0
chr04	33073889	.	A	C	21573.9	PASS	AB=0.603027;ABP=429.421;AC=45;AF=0.239362;AN=188;AO=2802;CIGAR=1X;DP=7873;DPB=7873;DPRA=1.57074;EPP=5966.48;EPPR=10334.7;GTI=6;LEN=1;MEANALT=1;MQM=24.9243;MQMR=24.9564;NS=94;NUMALT=1;ODDS=0.513734;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99818;QR=181112;RO=5069;RPL=2788;RPP=5966.48;RPPR=10334.7;RPR=14;RUN=1;SAF=2802;SAP=6087.48;SAR=0;SRF=5069;SRP=11010.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1244:0:0:0,-10.536,-77.7892	0/0:65:65,0:65:2319:0:0:0,-19.5669,-144.944	0/0:64:64,0:64:2284:0:0:0,-19.2659,-142.716	0/0:91:91,0:91:3244:0:0:0,-27.3937,-195.935	0/1:93:43,50:43:1527:50:1777:-78.3416,0,-67.4948	0/1:75:32,43:32:1139:43:1516:-73.9771,0,-47.1879	0/1:110:48,62:48:1720:62:2211:-105.675,0,-71.0573	0/0:85:84,1:84:3000:1:36:0,-23.0288,-185.693	0/0:90:90,0:90:3212:0:0:0,-27.0927,-200.028	0/0:54:54,0:54:1932:0:0:0,-16.2556,-113.986	0/1:68:25,43:25:896:43:1529:-75.2413,0,-32.6854	0/0:63:63,0:63:2243:0:0:0,-18.9649,-141.119	0/0:38:38,0:38:1356:0:0:0,-11.4391,-85.7894	0/0:52:52,0:52:1847:0:0:0,-15.6536,-114.939	0/0:44:44,0:44:1580:0:0:0,-13.2453,-95.4729	0/0:33:32,0:32:1152:0:0:0,-9.63296,-71.3069	0/1:58:27,31:27:960:31:1097:-52.7537,0,-43.6188	0/0:33:33,0:33:1184:0:0:0,-9.93399,-75.4509	0/1:36:18,18:18:635:18:631:-29.8835,0,-28.4936	0/1:171:64,107:64:2288:107:3816:-188.958,0,-88.172	0/1:151:54,97:54:1924:97:3484:-156.941,0,-72.9098	0/1:66:14,52:14:495:52:1851:-104.089,0,-12.4352	0/0:81:81,0:81:2896:0:0:0,-24.3834,-174.762	0/0:119:111,8:111:3976:8:288:0,-19.1153,-231.773	0/1:60:30,30:30:1072:30:1064:-45.9064,0,-50.2756	0/0:290:290,0:290:10412:0:0:0,-87.2987,-669.462	0/1:155:60,95:60:2143:95:3392:-153.213,0,-85.0632	0/0:21:21,0:21:744:0:0:0,-6.32163,-46.7472	0/0:171:171,0:171:6103:0:0:0,-51.4761,-388.693	0/1:142:53,89:53:1896:89:3178:-145.926,0,-74.0653	0/1:145:58,87:58:2076:87:3110:-151.869,0,-82.6756	0/1:57:19,38:19:684:38:1347:-58.4749,0,-27.1963	0/1:68:32,36:32:1144:36:1288:-52.7859,0,-50.741	0/1:30:13,17:13:464:17:608:-27.4659,0,-20.0371	0/1:102:28,74:28:1000:74:2643:-122.87,0,-31.6251	0/0:31:31,0:31:1103:0:0:0,-9.33193,-66.7706	0/1:144:70,74:70:2496:74:2643:-136.478,0,-114.381	0/1:240:77,163:77:2760:163:5810:-271.274,0,-98.1698	0/0:54:54,0:54:1932:0:0:0,-16.2556,-119.171	0/0:18:18,0:18:648:0:0:0,-5.41854,-41.2351	0/0:83:81,2:81:2904:2:72:0,-20.4758,-175.042	0/0:22:22,0:22:784:0:0:0,-6.62266,-49.9006	0/1:161:81,80:81:2900:80:2855:-119.572,0,-129.55	0/1:22:10,12:10:360:12:432:-20.9261,0,-14.9765	0/1:60:28,32:28:1000:32:1148:-55.6672,0,-41.9213	0/0:77:77,0:77:2756:0:0:0,-23.1793,-176.859	0/0:73:73,0:73:2611:0:0:0,-21.9752,-161.324	0/1:196:85,111:85:3052:111:3950:-194.013,0,-122.234	0/1:120:44,76:44:1580:76:2706:-136.486,0,-59.8138	0/0:61:61,0:61:2172:0:0:0,-18.3628,-132.917	0/1:187:79,108:79:2812:108:3855:-205.945,0,-122.423	0/1:53:11,42:11:396:42:1482:-75.9415,0,-7.78071	0/1:133:68,65:68:2395:65:2313:-107.079,0,-109.936	0/1:34:13,21:13:464:21:741:-40.2512,0,-19.9071	0/1:35:6,29:6:216:29:1040:-47.4618,0,-3.03193	0/0:78:78,0:78:2804:0:0:0,-23.4803,-171.363	0/0:50:50,0:50:1796:0:0:0,-15.0515,-107.616	0/0:12:12,0:12:415:0:0:0,-3.61236,-28.659	0/0:36:36,0:36:1292:0:0:0,-10.8371,-82.6796	0/1:96:45,51:45:1616:51:1813:-78.8977,0,-71.2163	0/0:74:74,0:74:2660:0:0:0,-22.2762,-161.025	0/0:14:14,0:14:500:0:0:0,-4.21442,-30.1922	0/0:106:106,0:106:3800:0:0:0,-31.9092,-240.273	0/1:191:67,124:67:2384:124:4372:-221.803,0,-87.9127	0/0:46:45,1:45:1604:1:36:0,-11.4738,-98.3644	0/0:35:35,0:35:1248:0:0:0,-10.536,-74.8076	0/0:88:87,1:87:3112:1:36:0,-23.9319,-183.998	0/0:115:115,0:115:4116:0:0:0,-34.6184,-248.311	0/0:21:21,0:21:748:0:0:0,-6.32163,-45.6248	0/0:70:70,0:70:2478:0:0:0,-21.0721,-153.938	0/1:72:31,41:31:1112:41:1463:-78.6799,0,-49.5935	0/1:44:21,23:21:748:23:805:-39.3528,0,-33.5907	0/1:156:66,90:66:2352:90:3215:-151.753,0,-99.6558	0/0:52:52,0:52:1863:0:0:0,-15.6536,-115.779	0/1:230:111,119:111:3972:119:4239:-180.583,0,-180.919	0/1:116:39,77:39:1388:77:2764:-142.523,0,-47.9708	0/1:137:41,96:41:1468:96:3402:-168.861,0,-50.2239	0/0:38:38,0:38:1364:0:0:0,-11.4391,-84.4504	0/1:44:15,29:15:540:29:1044:-51.2981,0,-19.6044	0/1:83:25,58:25:888:58:2088:-98.4415,0,-29.7792	0/1:88:35,53:35:1241:53:1900:-94.295,0,-51.2752	0/0:203:203,0:203:7256:0:0:0,-61.1091,-436.724	0/0:79:78,0:78:2778:0:0:0,-23.4803,-166.499	0/0:23:23,0:23:820:0:0:0,-6.92369,-49.5464	0/1:51:21,30:21:748:30:1033:-52.2096,0,-29.505	0/1:107:44,63:44:1571:63:2268:-112.109,0,-61.4199	0/0:27:27,0:27:960:0:0:0,-8.12781,-60.1516	0/0:66:66,0:66:2335:0:0:0,-19.868,-143.776	0/0:52:52,0:52:1860:0:0:0,-15.6536,-112.186	0/1:43:19,24:19:680:24:860:-38.6951,0,-28.0644	0/1:141:49,92:49:1752:92:3267:-153.821,0,-65.1443	0/1:54:17,37:17:608:37:1300:-67.4332,0,-19.5585	0/0:56:56,0:56:2004:0:0:0,-16.8577,-119.74	0/0:59:59,0:59:2099:0:0:0,-17.7608,-126.815
chr04	33073915	.	G	T,A	81229.5	PASS	AB=0.408851,0.590593;ABP=262.297,259.139;AC=154,34;AF=0.819149,0.180851;AN=188;AO=5014,2135;CIGAR=1X,1X;DP=7153;DPB=7153;DPRA=0,1.72838;EPP=10890.8,4639.1;EPPR=5.18177;GTI=8;LEN=1,1;MEANALT=1.44681,2.02564;MQM=24.9489,25.1082;MQMR=38;NS=94;NUMALT=2;ODDS=0.429503;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=179298,76454;QR=36;RO=1;RPL=5014,2135;RPP=10890.8,4639.1;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=5014,2135;SAP=10890.8,4639.1;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36,0:0:0:36,0:1270,0:-79.7691,-10.8371,0,-79.7691,-10.8371,-79.7691	1/1:64:0,64,0:0:0:64,0:2292,0:-143.01,-19.2659,0,-143.01,-19.2659,-143.01	1/1:63:0,62,0:0:0:62,0:2203,0:-137.816,-18.6639,0,-137.816,-18.6639,-137.816	1/1:87:0,87,0:0:0:87,0:3091,0:-186.794,-26.1896,0,-186.794,-26.1896,-186.794	1/2:88:0,44,44:0:0:44,44:1575,1580:-165.561,-80.9503,-67.705,-84.8534,0,-71.6081	1/1:31:0,31,0:0:0:31,0:1108,0:-67.665,-9.33193,0,-67.665,-9.33193,-67.665	1/2:104:0,48,55:0:0:48,55:1700,1961:-196.619,-107.649,-93.1992,-88.9777,0,-72.421	1/1:82:0,82,0:0:0:82,0:2935,0:-183.058,-24.6845,0,-183.058,-24.6845,-183.058	1/1:87:0,87,0:0:0:87,0:3120,0:-193.608,-26.1896,0,-193.608,-26.1896,-193.608	1/1:52:0,52,0:0:0:52,0:1868,0:-111.02,-15.6536,0,-111.02,-15.6536,-111.02	1/2:62:0,25,37:0:0:25,37:890,1324:-117.634,-72.2871,-64.7613,-45.5875,0,-34.4494	1/1:61:0,60,0:0:0:60,0:2143,0:-133.962,-18.0618,0,-133.962,-18.0618,-133.962	1/1:39:0,39,0:0:0:39,0:1400,0:-88.5395,-11.7402,0,-88.5395,-11.7402,-88.5395	1/1:52:0,52,0:0:0:52,0:1864,0:-114.936,-15.6536,0,-114.936,-15.6536,-114.936	1/1:43:0,43,0:0:0:43,0:1544,0:-93.1697,-12.9443,0,-93.1697,-12.9443,-93.1697	1/1:31:0,31,0:0:0:31,0:1116,0:-69.8884,-9.33193,0,-69.8884,-9.33193,-69.8884	1/1:27:0,27,0:0:0:27,0:951,0:-60.8431,-8.12781,0,-60.8431,-8.12781,-60.8431	1/1:32:0,32,0:0:0:32,0:1144,0:-73.1897,-9.63296,0,-73.1897,-9.63296,-73.1897	1/1:18:0,18,0:0:0:18,0:648,0:-39.534,-5.41854,0,-39.534,-5.41854,-39.534	1/2:165:0,63,102:0:0:63,102:2255,3649:-317.869,-199.76,-180.796,-118.354,0,-87.6487	1/2:145:0,54,91:0:0:54,91:1932,3268:-264.501,-162.936,-146.68,-101.804,0,-74.4103	1/2:64:0,14,50:0:0:14,50:504,1786:-133.174,-105.151,-100.937,-28.2812,0,-13.2297	1/1:81:0,81,0:0:0:81,0:2890,0:-174.426,-24.3834,0,-174.426,-24.3834,-174.426	1/1:119:0,111,8:0:0:111,8:3983,288:-248.481,-33.4143,0,-234.412,-19.1153,-232.004	1/2:60:0,30,30:0:0:30,30:1063,1072:-114.085,-55.1842,-46.1533,-59.145,0,-50.1141	1/1:288:0,288,0:0:0:288,0:10315,0:-664.312,-86.6966,0,-664.312,-86.6966,-664.312	1/2:146:0,57,89:0:0:57,89:2048,3192:-270.982,-161.795,-144.636,-109.429,0,-82.6378	1/1:21:0,21,0:0:0:21,0:756,0:-46.8712,-6.32163,0,-46.8712,-6.32163,-46.8712	1/1:168:0,168,0:0:0:168,0:6011,0:-381.158,-50.573,0,-381.158,-50.573,-381.158	1/2:139:0,52,87:0:0:52,87:1860,3108:-257.684,-158.987,-143.334,-98.9377,0,-72.7481	1/2:136:0,55,81:0:0:55,81:1971,2908:-262.758,-159.452,-142.896,-103.552,0,-79.1686	1/2:42:0,18,24:0:0:18,24:644,864:-78.4635,-43.0381,-37.6196,-35.6687,0,-28.444	1/2:58:0,31,27:0:0:31,27:1116,972:-108.769,-49.2677,-39.9358,-59.7414,0,-51.6136	1/1:13:0,13,0:0:0:13,0:464,0:-29.068,-3.91339,0,-29.068,-3.91339,-29.068	1/1:30:0,29,1:0:0:29,1:1036,36:-64.3975,-8.72987,0,-63.3547,-7.53423,-63.0537	1/1:30:0,30,0:0:0:30,0:1065,0:-64.3675,-9.0309,0,-64.3675,-9.0309,-64.3675	1/2:142:0,69,73:0:0:69,73:2476,2628:-291.366,-156.742,-135.971,-134.884,0,-112.909	1/2:234:0,79,155:0:0:79,155:2814,5564:-430.674,-280.162,-256.38,-150.754,0,-104.094	1/1:54:0,54,0:0:0:54,0:1944,0:-119.295,-16.2556,0,-119.295,-16.2556,-119.295	1/1:18:0,18,0:0:0:18,0:644,0:-40.1692,-5.41854,0,-40.1692,-5.41854,-40.1692	1/1:85:0,83,2:0:0:83,2:2980,72:-183.795,-24.9855,0,-180.125,-21.0778,-179.523	1/1:20:0,20,0:0:0:20,0:712,0:-45.2205,-6.0206,0,-45.2205,-6.0206,-45.2205	1/2:155:0,75,80:0:0:75,80:2683,2860:-287.558,-145.435,-122.858,-142.363,0,-118.28	1/2:21:0,10,11:0:0:10,11:356,396:-40.5847,-22.2757,-19.2654,-18.555,0,-15.2437	1/2:60:0,28,32:0:0:28,32:1008,1148:-115.472,-64.096,-55.6672,-51.6215,0,-41.9885	1/1:80:0,80,0:0:0:80,0:2822,0:-183.105,-24.0824,0,-183.105,-24.0824,-183.105	1/1:73:0,73,0:0:0:73,0:2616,0:-161.361,-21.9752,0,-161.361,-21.9752,-161.361	1/2:192:0,85,107:0:0:85,107:3040,3836:-368.783,-213.48,-187.893,-155.548,0,-123.337	1/2:116:0,43,73:0:0:43,73:1544,2624:-225.669,-145.225,-132.28,-80.6899,0,-58.7147	1/1:63:0,63,0:0:0:63,0:2260,0:-137.378,-18.9649,0,-137.378,-18.9649,-137.378	1/2:179:0,77,102:0:0:77,102:2747,3641:-369.067,-217.931,-194.752,-151.396,0,-120.691	1/2:44:0,11,33:0:0:11,33:396,1179:-84.8882,-64.7049,-61.3935,-20.424,0,-10.49	1/1:67:0,66,1:0:0:66,1:2368,36:-146.156,-19.868,0,-145.112,-18.6723,-144.811	1/2:36:0,14,22:0:0:14,22:504,780:-74.3977,-46.3764,-42.162,-28.2812,0,-21.6585	1/1:6:0,6,0:0:0:6,0:216,0:-13.568,-1.80618,0,-13.568,-1.80618,-13.568	1/1:81:0,81,0:0:0:81,0:2883,0:-177.227,-24.3834,0,-177.227,-24.3834,-177.227	1/1:48:0,48,0:0:0:48,0:1720,0:-103.31,-14.4494,0,-103.31,-14.4494,-103.31	1/1:12:0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chr04	33087555	.	G	A	26496.7	PASS	AB=0.311356;ABP=1995.48;AC=46;AF=0.244681;AN=188;AO=2686;CIGAR=1X;DP=12135;DPB=12135;DPRA=1.89221;EPP=5835.59;EPPR=20508.2;GTI=11;LEN=1;MEANALT=1.09259;MQM=30.0611;MQMR=16.6937;NS=94;NUMALT=1;ODDS=1.86041;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95811;QR=334997;RO=9443;RPL=0;RPP=5835.59;RPPR=19665.8;RPR=2686;RUN=1;SAF=0;SAP=5835.59;SAR=2686;SRF=98;SRP=19665.8;SRR=9345;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1889:0:0:0,-16.2556,-80.1716	0/1:133:103,30:103:3644:30:1080:-34.1042,0,-117.767	0/0:188:188,0:188:6691:0:0:0,-56.5936,-276.753	0/0:273:272,1:272:9678:1:36:0,-79.1266,-401.637	0/1:115:96,19:96:3419:19:672:-13.2988,0,-104.856	0/1:91:69,21:69:2476:21:752:-24.2129,0,-74.1948	0/1:101:66,35:66:2355:35:1260:-65.4174,0,-69.6451	0/0:195:194,1:194:6875:1:36:0,-55.9646,-282.942	0/0:83:83,0:83:2936:0:0:0,-24.9855,-126.715	0/0:74:73,1:73:2607:1:36:0,-19.2217,-103.201	0/0:42:41,1:41:1437:1:32:0,-9.85553,-55.984	0/0:76:76,0:76:2675:0:0:0,-22.8783,-115.178	0/1:87:57,30:57:2003:30:1072:-47.2193,0,-55.9984	0/1:100:66,34:66:2331:34:1220:-58.7576,0,-66.9883	0/1:86:64,22:64:2300:22:792:-34.255,0,-68.7262	0/0:63:63,0:63:2247:0:0:0,-18.9649,-92.31	0/0:36:36,0:36:1284:0:0:0,-10.8371,-52.5531	0/1:34:27,7:27:964:7:248:-6.87755,0,-31.1254	1/1:99:19,80:19:684:80:2876:-167.339,-1.65038,0	0/1:199:171,28:171:6069:28:999:-15.798,0,-194.79	0/1:258:176,82:176:6245:82:2944:-136.191,0,-174.853	0/1:215:171,43:171:6049:43:1529:-57.6839,0,-187.281	0/0:178:178,0:178:6329:0:0:0,-53.5833,-265.626	0/0:46:41,5:41:1452:5:180:0,-0.494663,-45.9233	0/0:66:66,0:66:2368:0:0:0,-19.868,-97.1793	0/1:424:331,93:331:11760:93:3286:-129.532,0,-374.157	0/0:242:238,3:238:8447:3:108:0,-66.1595,-342.652	0/0:31:31,0:31:1103:0:0:0,-9.33193,-44.4717	0/1:428:297,131:297:10505:131:4652:-236.521,0,-311.569	0/0:180:180,0:180:6404:0:0:0,-54.1854,-265.269	0/0:151:150,1:150:5319:1:36:0,-42.401,-218.602	0/1:3:2,1:2:72:1:36:-1.18349,0,-2.1289	0/0:4:4,0:4:129:0:0:0,-1.20412,-6.70247	1/1:326:2,324:2:72:324:11596:-790.047,-95.1038,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-16.404	0/0:12:12,0:12:423:0:0:0,-3.61236,-17.5437	0/1:267:201,66:201:7151:66:2360:-105.198,0,-213.415	0/0:184:182,2:182:6331:2:72:0,-49.8743,-266.505	0/1:158:40,118:40:1397:118:4208:-241.425,0,-10.5914	1/1:184:14,170:14:495:170:6087:-420.086,-34.3081,0	0/1:178:131,46:131:4647:46:1641:-65.8087,0,-140.929	0/0:14:14,0:14:491:0:0:0,-4.21442,-20.0552	0/0:172:170,2:170:6002:2:72:0,-46.2619,-243.283	0/0:39:39,0:39:1367:0:0:0,-11.7402,-55.8345	0/0:51:51,0:51:1803:0:0:0,-15.3525,-78.7566	0/0:100:100,0:100:3578:0:0:0,-30.103,-144.561	0/0:141:141,0:141:5015:0:0:0,-42.4452,-205.394	0/1:224:168,56:168:5969:56:2010:-83.3522,0,-183.397	0/1:131:99,32:99:3539:32:1141:-45.9632,0,-106.878	0/1:258:186,72:186:6643:72:2545:-114.812,0,-194.088	0/1:108:70,38:70:2474:38:1349:-74.3866,0,-67.9135	0/0:10:10,0:10:360:0:0:0,-3.0103,-16.4527	0/0:140:140,0:140:4966:0:0:0,-42.1442,-210.118	0/0:117:117,0:117:4160:0:0:0,-35.2205,-173.273	0/0:2:2,0:2:72:0:0:0,-0.60206,-3.03199	0/0:165:165,0:165:5887:0:0:0,-49.6699,-242.803	0/0:62:62,0:62:2189:0:0:0,-18.6639,-91.1937	0/0:4:4,0:4:144:0:0:0,-1.20412,-7.03781	1/1:88:3,85:3:108:85:3008:-230.862,-21.225,0	0/0:108:108,0:108:3830:0:0:0,-32.5112,-159.379	0/0:83:82,1:82:2864:1:36:0,-21.931,-116.544	0/0:8:8,0:8:284:0:0:0,-2.40824,-13.3836	0/0:210:210,0:210:7484:0:0:0,-63.2163,-309.75	0/1:269:220,49:220:7839:49:1755:-49.3098,0,-247.859	0/0:88:88,0:88:3124:0:0:0,-26.4906,-128.105	0/0:98:97,0:97:3408:0:0:0,-29.1999,-145.228	0/0:272:272,0:272:9693:0:0:0,-81.8802,-403.481	0/1:244:173,71:173:6138:71:2510:-116.135,0,-181.592	0/1:23:20,3:20:708:3:104:-1.09668,0,-22.4582	0/0:45:45,0:45:1570:0:0:0,-13.5463,-68.74	0/0:48:48,0:48:1695:0:0:0,-14.4494,-72.3292	0/0:18:17,1:17:608:1:36:0,-2.364,-21.9595	0/1:183:155,28:155:5455:28:999:-13.6082,0,-175.28	0/1:128:81,47:81:2836:47:1692:-76.6825,0,-89.0501	0/0:216:216,0:216:7678:0:0:0,-65.0225,-317.898	0/0:192:192,0:192:6831:0:0:0,-57.7978,-289.352	0/1:241:180,61:180:6373:61:2175:-75.9151,0,-197.543	0/0:98:97,1:97:3405:1:36:0,-26.5982,-141.692	0/1:13:9,4:9:320:4:144:-6.36463,0,-9.16633	0/1:174:129,45:129:4573:45:1608:-64.4538,0,-137.823	0/1:198:134,63:134:4758:63:2255:-93.584,0,-139.571	0/1:311:253,58:253:8990:58:2067:-63.8988,0,-278.701	0/1:85:65,20:65:2315:20:705:-27.1531,0,-73.4975	0/1:88:75,13:75:2675:13:431:-6.85835,0,-85.8108	0/0:46:46,0:46:1644:0:0:0,-13.8474,-70.2483	0/1:159:109,50:109:3859:50:1771:-86.397,0,-114.63	0/1:35:30,5:30:1068:5:180:-2.05048,0,-34.5098	0/0:95:95,0:95:3355:0:0:0,-28.5978,-141.418	0/0:69:69,0:69:2451:0:0:0,-20.7711,-103.497	0/1:178:45,133:45:1608:133:4762:-291.607,0,-11.9319	0/1:405:88,317:88:3092:317:11291:-697.624,0,-6.51036	0/1:114:78,36:78:2766:36:1283:-62.0246,0,-82.1289	0/0:17:17,0:17:612:0:0:0,-5.11751,-25.4285	0/0:75:75,0:75:2663:0:0:0,-22.5772,-113.921
chr04	33087561	.	G	A	32705.3	PASS	AB=0.683722;ABP=1899.61;AC=141;AF=0.75;AN=188;AO=9410;CIGAR=1X;DP=12187;DPB=12187;DPRA=0;EPP=20436.6;EPPR=6031.02;GTI=9;LEN=1;MEANALT=1.01064;MQM=16.6553;MQMR=29.7496;NS=94;NUMALT=1;ODDS=1.16005;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=335658;QR=97971;RO=2776;RPL=0;RPP=20436.6;RPPR=5242.19;RPR=9410;RUN=1;SAF=0;SAP=20436.6;SAR=9410;SRF=94;SRP=5242.19;SRR=2682;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:1,51:1:32:51:1809:-72.7357,-13.8703,0	0/1:129:32,97:32:1144:97:3464:-107.206,0,-38.4361	1/1:188:3,185:3:93:185:6622:-263.953,-50.1637,0	1/1:270:4,266:4:125:266:9483:-388.654,-74.0211,0	0/1:114:17,97:17:604:97:3461:-107.198,0,-9.26903	0/1:92:22,70:22:770:70:2491:-74.5339,0,-25.7463	0/1:98:37,61:37:1289:61:2183:-63.009,0,-66.5541	1/1:190:6,184:6:203:184:6582:-253.198,-43.6737,0	1/1:84:0,84:0:0:84:2990:-127.102,-25.2865,0	1/1:75:4,71:4:144:71:2540:-91.7161,-13.0789,0	1/1:41:1,40:1:32:40:1440:-54.6411,-9.5545,0	1/1:75:2,73:2:72:73:2597:-103.259,-17.8029,0	0/1:86:32,54:32:1112:54:1927:-51.3422,0,-51.0789	0/1:102:34,68:34:1203:68:2408:-68.4043,0,-57.1063	0/1:90:23,67:23:811:67:2360:-71.5798,0,-34.2517	1/1:62:0,62:0:0:62:2181:-90.349,-18.6639,0	1/1:38:0,38:0:0:38:1359:-55.417,-11.4391,0	0/1:35:10,25:10:343:25:868:-25.9446,0,-12.269	0/0:99:80,19:80:2809:19:680:0,-1.68404,-165.823	0/1:200:28,172:28:979:172:6148:-193.075,0,-14.2637	0/1:256:84,172:84:2970:172:6172:-171.056,0,-139.372	0/1:221:43,178:43:1540:178:6323:-195.174,0,-56.6712	1/1:177:1,176:1:36:176:6272:-261.385,-50.8154,0	1/1:47:5,42:5:180:42:1512:-47.3914,-0.795694,0	1/1:70:1,69:1:27:69:2467:-100.187,-18.848,0	0/1:428:95,333:95:3322:333:11885:-377.778,0,-130.621	1/1:245:4,241:4:144:241:8595:-347.767,-64.7159,0	1/1:30:0,30:0:0:30:1076:-43.0609,-9.0309,0	0/1:434:136,298:136:4823:298:10607:-310.059,0,-244.965	1/1:182:4,178:4:144:178:6378:-255.377,-48.2674,0	1/1:154:2,152:2:63:152:5416:-219.589,-41.3439,0	0/1:4:1,3:1:36:3:108:-3.26408,0,-0.882465	0/1:4:2,2:2:72:2:72:-1.82787,0,-2.69197	0/0:329:327,2:327:11584:2:72:0,-96.0069,-794.4	1/1:11:0,11:0:0:11:396:-16.404,-3.31133,0	1/1:11:0,11:0:0:11:396:-16.1333,-3.31133,0	0/1:266:64,202:64:2272:202:7244:-214.497,0,-98.6905	1/1:190:3,187:3:108:187:6641:-272.288,-49.4748,0	0/1:160:122,38:122:4291:38:1364:-6.38591,0,-248.468	0/0:183:170,13:170:6033:13:468:0,-35.8127,-420.31	0/1:183:48,135:48:1689:135:4827:-145.092,0,-67.2514	1/1:15:0,15:0:0:15:540:-21.5228,-4.51545,0	1/1:175:4,171:4:144:171:6117:-240.468,-42.9191,0	1/1:40:0,40:0:0:40:1416:-57.3019,-12.0412,0	1/1:51:0,51:0:0:51:1812:-78.301,-15.3525,0	1/1:101:1,100:1:36:100:3571:-143.686,-28.5125,0	1/1:147:2,145:2:48:145:5171:-206.28,-39.9961,0	0/1:213:52,161:52:1868:161:5731:-176.103,0,-75.031	0/1:128:34,94:34:1189:94:3364:-99.8408,0,-48.3782	0/1:257:71,186:71:2509:186:6623:-195.003,0,-113.326	0/1:109:38,71:38:1352:71:2544:-69.1222,0,-73.8678	1/1:10:1,9:1:36:9:324:-12.4851,-0.923715,0	1/1:140:0,140:0:0:140:5011:-207.788,-42.1442,0	1/1:120:0,120:0:0:120:4260:-178.723,-36.1236,0	1/1:2:0,2:0:0:2:72:-3.03199,-0.60206,0	1/1:168:0,168:0:0:168:6012:-247.095,-50.573,0	1/1:60:1,59:1:36:59:2099:-85.7778,-16.1703,0	1/1:4:0,4:0:0:4:144:-7.03781,-1.20412,0	0/0:89:86,3:86:3037:3:104:0,-21.5892,-231.019	1/1:109:0,109:0:0:109:3887:-160.042,-32.8123,0	1/1:84:1,83:1:32:83:2984:-118.452,-22.3874,0	1/1:8:0,8:0:0:8:284:-13.0753,-2.40824,0	1/1:210:0,210:0:0:210:7482:-307.96,-63.2163,0	0/1:269:49,220:49:1756:220:7839:-246.662,0,-47.9303	1/1:89:0,89:0:0:89:3179:-129.649,-26.7917,0	1/1:107:1,106:1:36:106:3739:-158.139,-29.8367,0	1/1:272:3,269:3:108:269:9592:-390.665,-75.7807,0	0/1:244:67,177:67:2378:177:6344:-188.001,0,-106.106	0/1:23:3,20:3:108:20:696:-21.8327,0,-1.20405	1/1:42:0,42:0:0:42:1508:-62.5451,-12.6433,0	1/1:46:1,45:1:36:45:1620:-64.8337,-12.3507,0	1/1:18:1,17:1:36:17:608:-21.9595,-2.364,0	0/1:181:29,152:29:1036:152:5423:-168.478,0,-16.5063	0/1:131:47,84:47:1680:84:2970:-91.8614,0,-75.3158	1/1:211:2,209:2:72:209:7486:-302.236,-59.5638,0	1/1:192:0,191:0:0:191:6809:-282.463,-57.4967,0	0/1:238:61,177:61:2172:177:6333:-192.229,0,-76.4197	1/1:102:2,100:2:72:100:3543:-144.287,-26.5256,0	0/1:13:4,9:4:144:9:324:-9.17206,0,-6.36463	0/1:171:47,124:47:1662:124:4451:-127.184,0,-66.0217	0/1:206:66,140:66:2333:140:4990:-141.593,0,-97.1136	0/1:311:62,249:62:2190:249:8899:-271.188,0,-72.2039	0/1:86:20,66:20:694:66:2330:-75.6458,0,-26.0289	0/1:89:14,75:14:500:75:2687:-84.7645,0,-9.25381	1/1:45:0,45:0:0:45:1589:-67.5282,-13.5464,0	0/1:159:50,109:50:1770:109:3880:-114.682,0,-86.6642	0/1:35:5,30:5:161:30:1052:-33.691,0,-1.31799	1/1:98:2,96:2:63:96:3416:-136.184,-25.0168,0	1/1:66:1,65:1:32:65:2332:-94.2143,-17.4468,0	0/1:181:136,45:136:4755:45:1596:-10.1685,0,-293.19	0/1:410:323,87:323:11375:87:3102:-4.15618,0,-704.616	0/1:113:38,75:38:1321:75:2696:-78.3905,0,-64.3179	1/1:17:0,17:0:0:17:574:-24.93,-5.11751,0	1/1:77:3,74:3:95:74:2615:-107.417,-19.0972,0
chr04	33087563	.	TTGC	TTGG,CTGG	85629.6	PASS	AB=0.680604,0.312681;ABP=1859.58,2000.19;AC=142,46;AF=0.755319,0.244681;AN=188;AO=9523,2747;CIGAR=3M1X,1X2M1X;DP=12353;DPB=12353;DPRA=0,1.95657;EPP=20638.5,5838.47;EPPR=5.18177;GTI=10;LEN=1,4;MEANALT=2.3617,2.89286;MQM=16.5372,30.0502;MQMR=22;NS=94;NUMALT=2;ODDS=6301.16;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=339977,95604;QR=25;RO=1;RPL=82,16;RPP=19975.8,5829.88;RPPR=5.18177;RPR=9441,2731;RUN=1,1;SAF=77,1;SAP=20018.5,5959.36;SAR=9446,2746;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,55,0:0:0:55,0:1944,0:-81.5311,-16.5567,0,-81.5311,-16.5567,-81.5311	1/2:134:0,100,31:0:0:100,31:3552,1044:-183.473,-65.2206,-35.1176,-118.21,0,-108.878	1/1:193:0,192,0:0:0:192,0:6854,0:-280.306,-57.7978,0,-280.306,-57.7978,-280.306	1/1:276:0,272,2:0:0:272,2:9744,65:-402.377,-81.8802,0,-399.002,-78.5341,-398.4	1/2:116:0,98,18:0:0:98,18:3516,611:-153.067,-39.3278,-9.82681,-113.997,0,-108.578	1/2:91:0,68,23:0:0:68,23:2440,781:-126.255,-49.0718,-28.6017,-77.4245,0,-70.5008	1/2:102:0,66,35:0:0:66,35:2355,1190:-160.097,-81.8194,-61.9514,-78.1798,0,-67.6437	1/1:194:0,192,1:0:0:192,1:6834,29:-281.427,-57.7978,0,-279.436,-55.814,-279.135	1/1:81:0,79,0:0:0:79,0:2817,0:-114.236,-23.7814,0,-114.236,-23.7814,-114.236	1/1:73:0,72,1:0:0:72,1:2564,34:-104.531,-21.6742,0,-102.141,-18.9875,-101.84	1/1:42:0,41,1:0:0:41,1:1461,35:-58.4785,-12.3422,0,-56.1838,-9.76249,-55.8828	1/1:76:0,76,0:0:0:76,0:2674,0:-113.237,-22.8783,0,-113.237,-22.8783,-113.237	1/2:87:0,55,32:0:0:55,32:1951,1109:-130.047,-67.4301,-50.8735,-62.8446,0,-53.2116	1/2:101:0,67,34:0:0:67,34:2395,1214:-155.837,-78.5253,-58.3563,-77.5577,0,-67.3227	1/2:89:0,65,22:0:0:65,22:2327,764:-127.051,-52.2952,-32.7283,-74.8507,0,-68.228	1/1:61:0,60,0:0:0:60,0:2137,0:-86.2244,-18.0618,0,-86.2244,-18.0618,-86.2244	1/1:35:0,35,0:0:0:35,0:1260,0:-50.6908,-10.5361,0,-50.6908,-10.5361,-50.6908	1/2:35:0,25,8:0:0:25,8:896,279:-46.8942,-16.8651,-9.33938,-30.0642,0,-27.656	2/2:102:0,19,83:0:0:19,83:684,2869:-199.908,-177.659,-171.939,-24.9855,-2.55347,0	1/2:207:0,177,27:0:0:177,27:6325,943:-274.677,-64.9177,-11.6354,-209.799,0,-201.671	1/2:261:0,174,86:0:0:174,86:6237,2973:-392.114,-194.895,-142.516,-197.148,0,-171.259	1/2:221:0,176,43:0:0:176,43:6312,1536:-314.373,-109.816,-56.8345,-204.535,0,-191.591	1/1:178:0,178,0:0:0:178,0:6378,0:-266.129,-53.5833,0,-266.129,-53.5833,-266.129	1/1:49:0,44,5:0:0:44,5:1549,178:-63.5967,-13.2453,0,-52.0659,-1.43822,-50.5607	1/1:70:0,70,0:0:0:70,0:2489,0:-104.433,-21.0721,0,-104.433,-21.0721,-104.433	1/2:432:0,331,97:0:0:331,97:11819,3300:-632.978,-231.754,-132.113,-401.229,0,-372.029	1/1:248:0,241,2:0:0:241,2:8630,72:-350.224,-72.5482,0,-345.6,-67.9215,-344.998	1/1:31:0,31,0:0:0:31,0:1116,0:-44.5028,-9.33193,0,-44.5028,-9.33193,-44.5028	1/2:436:0,299,135:0:0:299,135:10638,4703:-682.918,-330.05,-240.042,-352.885,0,-312.246	1/1:181:0,178,0:0:0:178,0:6353,0:-257.35,-53.5833,0,-257.35,-53.5833,-257.35	1/1:152:0,150,1:0:0:150,1:5355,33:-220.404,-45.1545,0,-218.052,-42.764,-217.751	1/2:4:0,3,1:0:0:3,1:108,35:-5.15113,-1.78215,-0.879058,-3.56511,0,-3.26408	1/1:3:0,3,0:0:0:3,0:108,0:-4.09729,-0.90309,0,-4.09729,-0.90309,-4.09729	2/2:335:0,2,331:0:0:2,331:72,11565:-803.418,-801.148,-800.546,-99.6409,-97.4215,0	1/1:10:0,10,0:0:0:10,0:360,0:-14.9683,-3.0103,0,-14.9683,-3.0103,-14.9683	1/1:12:0,12,0:0:0:12,0:432,0:-17.5693,-3.61236,0,-17.5693,-3.61236,-17.5693	1/2:270:0,202,67:0:0:202,67:7217,2350:-401.011,-166.633,-105.825,-234.432,0,-214.263	1/1:194:0,190,2:0:0:190,2:6756,71:-283.7,-57.1957,0,-279.095,-52.5629,-278.493	1/2:163:0,40,123:0:0:40,123:1436,4320:-307.593,-262.397,-250.356,-45.382,0,-8.35526	2/2:186:0,14,172:0:0:14,172:496,6030:-442.405,-425.649,-421.435,-51.7772,-34.8461,0	1/2:186:0,139,47:0:0:139,47:4966,1632:-270.421,-106.34,-64.4969,-164.334,0,-150.186	1/1:15:0,15,0:0:0:15,0:540,0:-21.5228,-4.51545,0,-21.5228,-4.51545,-21.5228	1/1:175:0,172,2:0:0:172,2:6127,72:-251.042,-51.7772,0,-246.417,-47.1273,-245.815	1/1:41:0,41,0:0:0:41,0:1468,0:-58.8537,-12.3422,0,-58.8537,-12.3422,-58.8537	1/1:52:0,51,0:0:0:51,0:1828,0:-77.3818,-15.3525,0,-77.3818,-15.3525,-77.3818	1/1:103:0,102,1:0:0:102,1:3655,28:-147.375,-30.7051,0,-145.17,-28.223,-144.869	1/1:146:0,146,0:0:0:146,0:5231,0:-215.566,-43.9504,0,-215.566,-43.9504,-215.566	1/2:223:0,166,56:0:0:166,56:5929,1923:-327.821,-130.986,-81.0153,-196.929,0,-180.071	1/2:131:0,98,32:0:0:98,32:3512,1089:-189.16,-73.7372,-44.2363,-115.471,0,-105.838	1/2:258:0,185,72:0:0:185,72:6600,2505:-382.585,-169.381,-113.691,-213.112,0,-191.438	1/2:109:0,71,37:0:0:71,37:2543,1288:-172.315,-92.0229,-70.6498,-80.3424,0,-69.2043	1/1:10:0,9,0:0:0:9,0:324,0:-14.3668,-2.70927,0,-14.3668,-2.70927,-14.3668	1/1:141:0,141,0:0:0:141,0:5043,0:-210.501,-42.4452,0,-210.501,-42.4452,-210.501	1/1:120:0,119,0:0:0:119,0:4236,0:-175.845,-35.8226,0,-175.845,-35.8226,-175.845	1/1:2:0,2,0:0:0:2,0:72,0:-3.03199,-0.60206,0,-3.03199,-0.60206,-3.03199	1/1:174:0,172,0:0:0:172,0:6140,0:-248.944,-51.7772,0,-24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chr05	73708	.	G	A	21442.6	PASS	AB=0.485586;ABP=7.83046;AC=43;AF=0.231183;AN=186;AO=1303;CIGAR=1X;DP=6326;DPB=6326;DPRA=0.898499;EPP=2823.76;EPPR=10845.3;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.7107;MQMR=59.7345;NS=93;NUMALT=1;ODDS=0.939844;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46553;QR=177719;RO=5021;RPL=1;RPP=2823.76;RPPR=10845.3;RPR=1302;RUN=1;SAF=0;SAP=2832.44;SAR=1303;SRF=0;SRP=10906;SRR=5021;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:22,9:22:768:9:324:-20.1739,0,-60.1014	0/1:63:27,36:27:946:36:1288:-97.2424,0,-66.488	0/0:90:90,0:90:3162:0:0:0,-27.0927,-284.76	0/0:199:199,0:199:7071:0:0:0,-59.905,-636.389	0/1:28:19,9:19:684:9:324:-21.077,0,-53.4569	0/1:10:5,5:5:171:5:180:-13.5418,0,-12.7152	0/0:69:69,0:69:2455:0:0:0,-20.7711,-221.205	0/0:96:96,0:96:3379:0:0:0,-28.8989,-304.318	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.256	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.844	0/0:36:36,0:36:1264:0:0:0,-10.8371,-114.037	0/0:64:64,0:64:2255:0:0:0,-19.2659,-203.182	0/1:52:28,24:28:999:24:864:-62.4208,0,-74.5709	0/0:49:49,0:49:1689:0:0:0,-14.7505,-152.275	0/1:46:24,22:24:860:22:788:-57.3974,0,-63.8745	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.29	0/0:26:26,0:26:908:0:0:0,-7.82678,-82.0325	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5975	0/0:28:28,0:28:982:0:0:0,-8.42884,-88.6907	0/1:158:73,85:73:2581:85:3027:-225.088,0,-184.961	0/1:80:52,28:52:1864:28:1000:-66.2284,0,-143.942	0/1:59:12,47:12:428:47:1681:-133.807,0,-21.0948	0/1:59:28,29:28:1004:29:1044:-76.7563,0,-73.1574	0/0:33:32,1:32:1127:1:36:0,-6.34082,-98.1218	0/1:80:40,40:40:1413:40:1436:-105.451,0,-103.383	0/0:179:179,0:179:6373:0:0:0,-53.8844,-573.6	0/0:191:191,0:191:6738:0:0:0,-57.4967,-606.329	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/1:210:98,112:98:3478:112:3997:-296.692,0,-250.012	0/0:122:118,4:118:4168:4:144:0,-23.412,-361.945	0/1:66:37,29:37:1315:29:1036:-73.6803,0,-98.7752	0/1:9:7,2:7:244:2:68:-3.74844,0,-19.5902	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.02195	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:134:133,1:133:4714:1:36:0,-36.7397,-420.82	0/0:74:74,0:74:2605:0:0:0,-22.2762,-234.493	0/0:46:46,0:46:1600:0:0:0,-13.8474,-144.276	.:.:.:.:.:.:.:.	0/0:136:136,0:136:4843:0:0:0,-40.9401,-435.996	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/0:127:127,0:127:4501:0:0:0,-38.2308,-405.246	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.799	0/1:44:20,24:20:684:24:864:-64.8372,0,-48.6312	0/1:98:50,48:50:1796:48:1706:-124.323,0,-132.42	0/0:69:69,0:69:2440:0:0:0,-20.7711,-219.846	0/1:115:49,66:49:1742:66:2359:-177.318,0,-122.442	0/0:82:82,0:82:2906:0:0:0,-24.6845,-261.769	0/0:72:72,0:72:2527:0:0:0,-21.6742,-227.676	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.202	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.89	0/1:26:12,14:12:398:14:500:-37.5094,0,-28.3091	0/1:20:9,11:9:312:11:381:-28.6,0,-22.3948	0/1:137:69,68:69:2404:68:2448:-179.19,0,-175.089	0/1:22:12,10:12:423:10:356:-25.7586,0,-31.78	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:35:18,17:18:644:17:612:-44.8728,0,-47.7499	0/0:79:79,0:79:2764:0:0:0,-23.7814,-248.995	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/1:139:84,55:84:2991:55:1972:-135.908,0,-227.571	0/1:99:54,45:54:1940:45:1586:-113.223,0,-145.072	0/1:50:31,19:31:1091:19:680:-46.462,0,-83.4472	0/1:76:38,38:38:1344:38:1360:-99.7774,0,-98.3786	0/0:153:153,0:153:5391:0:0:0,-46.0576,-485.313	0/0:148:148,0:148:5239:0:0:0,-44.5524,-471.638	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:49:49,0:49:1714:0:0:0,-14.7505,-154.513	0/1:28:15,13:15:532:13:468:-34.0284,0,-39.7842	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0473	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.558	0/0:90:90,0:90:3198:0:0:0,-27.0927,-288.019	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.057	0/1:179:82,97:82:2924:97:3480:-259.522,0,-209.507	0/1:52:32,20:32:1104:20:696:-47.3066,0,-84.0019	0/0:77:77,0:77:2711:0:0:0,-23.1793,-244.215	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:88:44,44:44:1544:44:1584:-116.348,0,-112.749	0/1:63:36,27:36:1271:27:963:-68.0113,0,-95.7125	0/0:164:164,0:164:5830:0:0:0,-49.3689,-524.807	0/1:41:21,20:21:710:20:697:-50.6966,0,-51.8696	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.448	0/0:22:22,0:22:776:0:0:0,-6.62266,-69.7907	0/1:84:50,34:50:1741:34:1208:-83.7362,0,-131.683	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6899	0/1:44:20,24:20:694:24:864:-64.8114,0,-49.5269	0/1:70:46,24:46:1634:24:860:-56.6416,0,-126.251	0/1:35:19,16:19:661:16:561:-40.2811,0,-49.2756	0/1:68:44,24:44:1556:24:851:-56.4388,0,-119.669	0/1:64:20,44:20:707:44:1576:-122.837,0,-44.6887	0/0:118:118,0:118:4176:0:0:0,-35.5215,-376.007	0/0:85:85,0:85:2993:0:0:0,-25.5875,-269.596
chr05	73721	.	A	G	111132	PASS	AB=0.516045;ABP=9.00292;AC=143;AF=0.768817;AN=186;AO=5073;CIGAR=1X;DP=6379;DPB=6379;DPRA=0;EPP=10520.9;EPPR=2750.59;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.7193;MQMR=59.7088;NS=93;NUMALT=1;ODDS=0.601467;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181102;QR=46815;RO=1305;RPL=5015;RPP=10520.9;RPPR=2750.59;RPR=58;RUN=1;SAF=0;SAP=11018.9;SAR=5073;SRF=0;SRP=2836.78;SRR=1305;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:9,22:9:324:22:784:-61.5164,0,-20.1739	0/1:62:35,27:35:1252:27:959:-67.9615,0,-94.3098	1/1:93:0,93:0:0:93:3313:-298.346,-27.9958,0	1/1:202:1,201:1:36:201:7148:-639.733,-57.2098,0	0/1:31:9,22:9:324:22:780:-61.1865,0,-20.1739	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:94:0,94:0:0:94:3332:-300.086,-28.2968,0	1/1:37:0,37:0:0:37:1318:-118.704,-11.1381,0	1/1:70:0,70:0:0:70:2499:-225.155,-21.0721,0	1/1:36:0,36:0:0:36:1268:-114.4,-10.8371,0	1/1:66:0,66:0:0:66:2361:-212.711,-19.868,0	0/1:53:24,29:24:864:29:1044:-78.3202,0,-62.1198	1/1:48:0,48:0:0:48:1712:-154.35,-14.4494,0	0/1:45:21,24:21:756:24:860:-64.1755,0,-54.8209	1/1:41:0,41:0:0:41:1463:-131.956,-12.3422,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:21:0,21:0:0:21:756:-68.359,-6.32163,0	1/1:28:0,28:0:0:28:1004:-90.6673,-8.42884,0	0/1:158:85,73:85:3056:73:2607:-187.3,0,-227.692	0/1:79:26,53:26:928:53:1890:-146.584,0,-60.0523	0/1:61:49,12:49:1747:12:428:-20.4927,0,-139.124	0/1:59:31,28:31:1116:28:1008:-73.2756,0,-82.9909	1/1:33:1,32:1:36:32:1147:-99.9287,-6.34082,0	0/1:79:39,40:39:1400:40:1427:-104.945,0,-102.51	1/1:181:0,181:0:0:181:6484:-583.579,-54.4864,0	1/1:191:0,191:0:0:191:6828:-614.542,-57.4967,0	1/1:19:0,19:0:0:19:664:-60.0819,-5.71957,0	0/1:211:111,100:111:3975:100:3567:-257.719,0,-294.412	1/1:126:4,122:4:144:122:4334:-376.89,-24.6162,0	0/1:66:29,37:29:1044:37:1328:-99.9382,0,-74.3974	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:6:4,2:4:144:2:72:-5.02195,0,-11.5074	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:137:1,136:1:36:136:4867:-434.581,-37.6428,0	1/1:73:0,73:0:0:73:2610:-234.95,-21.9752,0	1/1:45:0,45:0:0:45:1616:-145.722,-13.5464,0	.:.:.:.:.:.:.:.	1/1:138:0,138:0:0:138:4882:-439.501,-41.5421,0	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:129:0,129:0:0:129:4586:-412.881,-38.8329,0	1/1:53:0,53:0:0:53:1891:-170.465,-15.9546,0	0/1:44:24,20:24:864:20:716:-51.5224,0,-64.8372	0/1:99:49,50:49:1752:50:1796:-132.119,0,-128.161	1/1:70:0,70:0:0:70:2477:-223.174,-21.0721,0	0/1:116:67,49:67:2381:49:1756:-123.402,0,-178.999	1/1:84:1,83:1:36:83:2942:-261.409,-21.6882,0	1/1:72:0,72:0:0:72:2584:-232.804,-21.6742,0	1/1:95:0,95:0:0:95:3403:-306.471,-28.5979,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:109:0,109:0:0:109:3908:-351.835,-32.8123,0	0/1:27:15,12:15:540:12:432:-31.0925,0,-40.8087	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:135:67,68:67:2412:68:2417:-176.872,0,-176.553	0/1:21:8,13:8:288:13:464:-35.7735,0,-19.9458	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:36:18,18:18:648:18:648:-47.8102,0,-47.8102	1/1:80:0,80:0:0:80:2846:-256.375,-24.0824,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:139:55,84:55:1972:84:3007:-229.009,0,-135.908	0/1:99:44,55:44:1572:55:1972:-147.951,0,-111.963	0/1:50:18,32:18:644:32:1152:-88.934,0,-43.2234	0/1:76:36,40:36:1292:40:1440:-107.015,0,-93.6606	1/1:150:0,150:0:0:150:5333:-480.09,-45.1545,0	1/1:151:0,151:0:0:151:5412:-487.197,-45.4555,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:48:0,48:0:0:48:1720:-155.074,-14.4494,0	0/1:29:14,15:14:500:15:521:-38.4865,0,-36.604	1/1:17:0,17:0:0:17:608:-55.0473,-5.11751,0	1/1:116:0,116:0:0:116:4133:-371.885,-34.9195,0	1/1:91:0,91:0:0:91:3255:-293.101,-27.3937,0	1/1:52:0,52:0:0:52:1868:-168.384,-15.6536,0	0/1:178:96,82:96:3444:82:2940:-211.246,0,-256.584	0/1:51:19,32:19:684:32:1126:-86.293,0,-46.5378	1/1:76:0,76:0:0:76:2724:-245.385,-22.8783,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:91:45,45:45:1620:45:1612:-117.908,0,-118.625	0/1:63:28,35:28:1004:35:1260:-94.7161,0,-71.7009	1/1:165:0,165:0:0:165:5893:-530.473,-49.67,0	0/1:40:20,20:20:720:20:707:-51.9134,0,-53.0591	1/1:39:0,39:0:0:39:1400:-126.285,-11.7402,0	1/1:24:0,24:0:0:24:849:-76.2701,-7.22472,0	0/1:85:35,50:35:1256:50:1791:-135.884,0,-87.7544	1/1:14:0,14:0:0:14:504:-45.6899,-4.21442,0	0/1:45:25,20:25:900:20:716:-51.2132,0,-67.7488	0/1:71:24,47:24:864:47:1665:-128.745,0,-56.7013	0/1:37:17,20:17:608:20:720:-53.9907,0,-43.9139	0/1:68:25,43:25:896:43:1535:-117.943,0,-60.4885	0/1:63:43,20:43:1548:20:716:-45.8028,0,-120.516	1/1:119:1,118:1:36:118:4193:-373.932,-32.2243,0	1/1:89:0,89:0:0:89:3192:-287.498,-26.7917,0
chr05	102448	.	A	G	82072.8	PASS	AB=0.477441;ABP=13.7875;AC=147;AF=0.781915;AN=188;AO=4199;CIGAR=1X;DP=5489;DPB=5489;DPRA=0;EPP=9017.09;EPPR=2776.01;GTI=0;LEN=1;MEANALT=1.05319;MQM=41.2348;MQMR=58.7899;NS=94;NUMALT=1;ODDS=0.56188;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150406;QR=46093;RO=1285;RPL=12;RPP=9017.09;RPPR=2776.01;RPR=4187;RUN=1;SAF=4199;SAP=9121.02;SAR=0;SRF=1285;SRP=2793.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:8,5:8:288:5:176:-11.5146,0,-22.3415	0/1:49:25,24:25:900:24:860:-56.1267,0,-66.4235	1/1:85:0,85:0:0:85:3044:-251.501,-25.5876,0	1/1:167:0,167:0:0:167:5971:-508.313,-50.272,0	0/1:19:9,10:9:324:10:360:-24.8533,0,-23.7863	0/1:22:8,14:8:288:14:504:-35.0197,0,-19.6323	1/1:37:0,36:0:0:36:1288:-108.34,-10.8371,0	1/1:50:0,50:0:0:50:1796:-147.667,-15.0515,0	1/1:34:0,34:0:0:34:1208:-101.387,-10.235,0	1/1:74:0,74:0:0:74:2656:-227.12,-22.2762,0	1/1:24:0,24:0:0:24:864:-74.2994,-7.22472,0	1/1:59:0,59:0:0:59:2124:-175.203,-17.7608,0	0/1:32:16,16:16:576:16:572:-38.0321,0,-42.5172	1/1:16:0,16:0:0:16:566:-47.8427,-4.81648,0	0/1:27:18,9:18:648:9:324:-20.4232,0,-50.4899	1/1:22:0,22:0:0:22:786:-63.8137,-6.62266,0	1/1:9:0,9:0:0:9:324:-26.7802,-2.70927,0	1/1:13:0,13:0:0:13:464:-38.7428,-3.91339,0	1/1:9:0,9:0:0:9:324:-26.9331,-2.70927,0	0/1:130:70,60:70:2512:60:2160:-147.572,0,-187.12	0/1:169:96,73:96:3452:73:2609:-170.263,0,-259.78	0/1:78:59,19:59:2120:19:680:-35.1147,0,-167.588	0/1:59:36,23:36:1277:23:828:-54.5541,0,-97.4636	0/1:41:10,31:10:360:31:1112:-79.0028,0,-20.3534	0/1:24:14,10:14:504:10:360:-23.8163,0,-38.4221	1/1:187:2,185:2:72:185:6629:-571.253,-49.493,0	1/1:178:0,178:0:0:178:6326:-531.304,-53.5833,0	1/1:11:0,11:0:0:11:396:-34.1805,-3.31133,0	0/1:197:86,111:86:3080:111:3943:-281.531,0,-218.06	1/1:104:4,100:4:144:100:3577:-288.667,-17.9935,0	0/1:80:37,43:37:1313:43:1548:-108.244,0,-94.2821	0/1:30:4,26:4:140:26:922:-67.757,0,-3.86607	1/1:20:0,20:0:0:20:720:-59.3084,-6.0206,0	0/1:12:4,8:4:144:8:288:-20.7272,0,-9.69493	1/1:38:0,38:0:0:38:1349:-111.049,-11.4391,0	1/1:14:1,13:1:36:13:468:-35.4155,-0.617855,0	1/1:124:0,124:0:0:124:4447:-385.18,-37.3277,0	1/1:58:0,58:0:0:58:2080:-175.955,-17.4597,0	1/1:12:0,12:0:0:12:432:-36.3318,-3.61236,0	1/1:18:0,18:0:0:18:640:-53.5877,-5.41854,0	1/1:66:0,66:0:0:66:2364:-198.083,-19.868,0	0/1:10:5,5:5:180:5:180:-12.382,0,-13.5418	1/1:48:0,48:0:0:48:1724:-143.705,-14.4494,0	1/1:26:0,26:0:0:26:936:-80.3875,-7.82678,0	0/1:22:13,9:13:468:9:324:-21.7676,0,-35.7799	0/1:63:36,27:36:1296:27:964:-65.6874,0,-97.979	1/1:33:0,33:0:0:33:1180:-98.7987,-9.93399,0	0/1:75:42,33:42:1508:33:1184:-77.0994,0,-113.301	1/1:85:0,85:0:0:85:3052:-261.746,-25.5876,0	1/1:94:0,94:0:0:94:3370:-288.243,-28.2968,0	1/1:60:0,60:0:0:60:2156:-188.211,-18.0618,0	1/1:35:1,34:1:36:34:1217:-101.414,-6.93778,0	1/1:61:0,61:0:0:61:2192:-180.812,-18.3628,0	0/1:23:11,12:11:396:12:432:-31.1714,0,-29.0591	0/1:6:2,4:2:72:4:144:-10.856,0,-5.02729	0/1:96:40,56:40:1440:56:1992:-137.718,0,-100.346	0/1:16:5,11:5:180:11:396:-29.0392,0,-11.7356	1/1:25:1,24:1:36:24:864:-70.6111,-3.92748,0	1/1:82:0,82:0:0:82:2940:-253.08,-24.6845,0	0/1:37:18,19:18:644:19:684:-47.6457,0,-47.1525	1/1:56:1,55:1:36:55:1972:-164.915,-13.2594,0	1/1:23:0,23:0:0:23:824:-70.5164,-6.92369,0	0/1:223:117,106:117:4200:106:3793:-263.334,0,-310.762	0/1:100:62,38:62:2223:38:1368:-87.467,0,-170.17	0/1:34:24,10:24:860:10:356:-19.9185,0,-67.4845	0/1:38:21,17:21:756:17:612:-40.9973,0,-56.9281	1/1:126:0,125:0:0:125:4458:-379.641,-37.6288,0	1/1:122:2,120:2:72:120:4312:-361.336,-29.8889,0	1/1:10:0,10:0:0:10:356:-29.6779,-3.0103,0	1/1:31:1,30:1:36:30:1076:-87.4335,-5.73537,0	0/1:24:14,10:14:504:10:360:-24.5355,0,-38.4557	1/1:15:0,15:0:0:15:540:-46.7194,-4.51545,0	1/1:100:0,100:0:0:100:3592:-296.241,-30.103,0	1/1:52:0,52:0:0:52:1853:-151.657,-15.6536,0	1/1:106:0,105:0:0:105:3760:-318.755,-31.6082,0	0/1:192:99,93:99:3544:93:3340:-226.857,0,-260.594	0/1:38:26,12:26:936:12:432:-24.9001,0,-73.01	1/1:88:0,88:0:0:88:3164:-260.463,-26.4906,0	1/1:24:0,24:0:0:24:860:-71.5286,-7.22472,0	0/1:78:38,40:38:1352:40:1431:-94.56,0,-98.3581	0/1:79:36,42:36:1292:42:1512:-99.1812,0,-91.7229	1/1:149:0,149:0:0:149:5351:-458.479,-44.8535,0	0/1:44:24,20:24:860:20:720:-49.348,0,-64.4742	1/1:9:0,9:0:0:9:324:-28.0407,-2.70927,0	1/1:13:0,13:0:0:13:468:-39.772,-3.91339,0	0/1:81:37,43:37:1328:43:1540:-106.248,0,-95.3449	1/1:17:0,17:0:0:17:608:-49.5441,-5.11751,0	0/1:38:26,12:26:932:12:432:-23.9569,0,-72.5852	0/1:44:21,23:21:756:23:824:-54.2316,0,-54.9783	0/1:8:4,4:4:144:4:140:-9.63451,0,-10.9054	0/1:46:25,21:25:892:21:756:-50.1362,0,-66.6643	0/1:41:26,15:26:936:15:532:-33.8082,0,-72.2172	1/1:95:0,95:0:0:95:3388:-292.104,-28.5979,0	1/1:37:0,37:0:0:37:1332:-114.156,-11.1381,0
chr05	102469	.	ACCTT	ACTTTT,ACTT,ACTTT	84240.4	PASS	AB=0.610456,0.288916,0.120576;ABP=523.968,1609.12,6080.16;AC=101,41,46;AF=0.537234,0.218085,0.244681;AN=188;AO=3239,1203,602;CIGAR=2M1I1X2M,1M1D3M,2M1X2M;DP=5184;DPB=5640.6;DPRA=0,3.50654,6.45202;EPP=7036.41,2615.29,1310.24;EPPR=5.18177;GTI=10;LEN=6,1,1;MEANALT=3.43617,3.73529,3.51136;MQM=37.4545,58.1845,57.206;MQMR=52;NS=94;NUMALT=3;ODDS=4251.62;PAIRED=0,0,0;PAIREDR=0;PAO=0,0,0;PQA=0,0,0;PQR=0;PRO=0;QA=112222,42109,21501;QR=26;RO=1;RPL=3239,1203,602;RPP=7036.41,2615.29,1310.24;RPPR=5.18177;RPR=0,0,0;RUN=1,1,1;SAF=3239,1203,602;SAP=7036.41,2615.29,1310.24;SAR=0,0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,del,snp	GT:DP:AD:RO:QR:AO:QA:GL	2/3:12:0,2,8,2:0:0:2,8,2:60,280,72:-28.5959,-24.1172,-23.5151,-5.9133,-1.46184,-3.50506,-22.7169,-18.24,0,-22.1149	1/2:49:0,22,25,2:0:0:22,25,2:755,873,72:-126.626,-70.8571,-64.2344,-55.7435,0,-48.2177,-120.75,-64.9814,-49.8649,-120.148	1/3:79:0,64,3,8:0:0:64,3,8:2165,108,284:-182.839,-23.1204,-3.85449,-174.707,-14.9902,-173.804,-159.731,0,-151.598,-157.323	1/3:162:0,132,5,21:0:0:132,5,21:4597,167,756:-414.702,-61.6647,-21.9287,-401.583,-48.55,-400.078,-353.056,0,-339.936,-346.734	1/2:18:0,7,9,0:0:0:7,9,0:248,312,0:-43.958,-25.3659,-23.2587,-18.5906,0,-15.8813,-43.958,-25.3659,-18.5906,-43.958	1/2:19:0,11,6,2:0:0:11,6,2:377,212,68:-44.885,-17.267,-13.9557,-27.6164,0,-25.8102,-39.3679,-11.7545,-22.0965,-38.7658	1/3:35:0,28,0,4:0:0:28,0,4:964,0,144:-85.0554,-11.7461,-3.31723,-85.0554,-11.7461,-85.0554,-73.3163,0,-73.3163,-72.1121	1/1:46:0,43,1,2:0:0:43,1,2:1449,36,72:-120.073,-12.9443,0,-117.362,-10.2422,-117.061,-114.196,-7.05265,-111.485,-113.594	1/3:31:0,23,0,8:0:0:23,0,8:758,0,288:-79.6503,-23.8592,-16.9355,-79.6503,-23.8592,-79.6503,-56.1363,0,-56.1363,-53.7281	1/3:72:0,50,3,17:0:0:50,3,17:1751,96,608:-183.494,-49.2844,-34.2329,-176.571,-42.3679,-175.668,-134.242,0,-127.319,-129.124	1/3:23:0,20,0,3:0:0:20,0,3:704,0,89:-61.6411,-7.40126,-1.38066,-61.6411,-7.40126,-61.6411,-54.5413,0,-54.5413,-53.6383	1/3:57:0,46,1,8:0:0:46,1,8:1559,36,288:-138.562,-23.5001,-9.6527,-135.851,-20.7915,-135.55,-115.07,0,-112.359,-112.662	1/2:29:0,13,14,2:0:0:13,14,2:440,475,72:-71.0689,-38.4861,-34.5727,-32.5547,0,-28.3403,-65.1918,-32.6087,-26.6735,-64.5897	1/3:16:0,11,1,2:0:0:11,1,2:370,36,72:-33.5096,-5.88205,-2.57072,-30.8412,-3.21874,-30.5401,-27.6297,0,-24.9608,-27.0276	1/2:21:0,6,13,2:0:0:6,13,2:212,440,72:-52.0741,-35.6511,-33.8449,-16.4074,0,-12.494,-46.1972,-29.7734,-10.527,-45.5952	1/3:21:0,16,0,2:0:0:16,0,2:531,0,63:-44.663,-5.06147,-0.244985,-44.663,-5.06147,-44.663,-39.6194,0,-39.6194,-39.0173	1/1:9:0,8,0,0:0:0:8,0,0:270,0,0:-22.3513,-2.40824,0,-22.3513,-2.40824,-22.3513,-22.3513,-2.40824,-22.3513,-22.3513	1/1:12:0,10,0,1:0:0:10,0,1:348,0,36:-28.6693,-3.0103,0,-28.6693,-3.0103,-28.6693,-25.7287,-0.0641489,-25.7287,-25.4276	1/3:9:0,8,0,1:0:0:8,0,1:278,0,36:-23.784,-3.29039,-0.882152,-23.784,-3.29039,-23.784,-20.8483,0,-20.8483,-20.5472	1/2:116:0,45,58,12:0:0:45,58,12:1570,2005,432:-283.888,-162.862,-149.316,-121.014,0,-103.554,-248.919,-127.893,-86.0411,-245.307	1/2:158:0,57,91,9:0:0:57,91,9:1989,3177,324:-407.692,-258.29,-241.131,-149.386,0,-121.993,-381.543,-232.14,-123.233,-378.833	1/2:73:0,14,56,2:0:0:14,56,2:481,1969,72:-197.668,-160.256,-156.042,-37.3956,0,-20.5379,-191.805,-154.393,-31.5298,-191.203	1/2:60:0,16,38,6:0:0:16,38,6:576,1323,216:-152.048,-107.567,-102.75,-44.4707,0,-33.0316,-134.426,-89.9441,-26.8448,-132.62	1/2:39:0,21,9,8:0:0:21,9,8:702,320,284:-77.8606,-26.0757,-19.754,-51.7783,0,-49.069,-54.7384,-2.95968,-28.6506,-52.3301	1/2:20:0,7,11,2:0:0:7,11,2:237,388,72:-49.4217,-31.5363,-29.4291,-17.8653,0,-14.5539,-43.5509,-25.6665,-11.9873,-42.9489	1/3:180:0,145,3,26:0:0:145,3,26:5171,108,924:-479.786,-74.7096,-31.0602,-471.009,-65.9316,-470.106,-405.085,0,-396.307,-397.258	1/3:172:1,141,2,23:1:26:141,2,23:4912,68,824:-432.812,-65.0217,-24.6115,-427.867,-61.8119,-429.303,-366.078,0,-362.869,-361.191	1/3:10:0,8,0,2:0:0:8,0,2:281,0,72:-27.4912,-6.23466,-3.82642,-27.4912,-6.23466,-27.4912,-21.6102,0,-21.6102,-21.0081	1/2:185:0,86,79,18:0:0:86,79,18:2948,2793,644:-456.419,-226.632,-200.744,-229.776,0,-205.995,-404.068,-174.282,-177.422,-398.649	1/3:100:0,73,5,17:0:0:73,5,17:2516,176,608:-238.688,-49.562,-27.5869,-224.628,-35.5042,-223.123,-189.133,0,-175.073,-184.015	1/2:74:0,35,34,5:0:0:35,34,5:1239,1193,180:-192.065,-96.7064,-86.1704,-95.3447,0,-85.1097,-177.399,-82.0405,-80.6771,-175.894	1/2:29:0,23,3,1:0:0:23,3,1:788,108,36:-67.5501,-8.77209,-1.8484,-58.7804,0,-57.8773,-64.6115,-5.8331,-55.8414,-64.3104	1/3:22:0,18,0,4:0:0:18,0,4:612,0,144:-57.435,-11.8327,-6.41415,-57.435,-11.8327,-57.435,-45.9479,0,-45.9479,-44.7438	1/2:12:0,6,4,2:0:0:6,4,2:210,144,72:-27.1921,-11.7434,-9.93722,-15.4387,0,-14.2346,-21.3133,-5.86851,-9.55387,-20.7112	1/3:33:0,27,0,5:0:0:27,0,5:896,0,176:-79.5111,-13.8449,-5.71704,-79.5111,-13.8449,-79.5111,-65.6598,0,-65.6598,-64.1546	1/3:14:0,11,1,2:0:0:11,1,2:371,36,72:-33.2138,-5.85176,-2.54043,-30.275,-2.91553,-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chr05	176812	.	G	T	131112	PASS	AB=0.469493;ABP=31.2307;AC=146;AF=0.776596;AN=188;AO=6154;CIGAR=1X;DP=8021;DPB=8021;DPRA=0;EPP=13331.5;EPPR=4048.46;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.6882;MQMR=59.9989;NS=94;NUMALT=1;ODDS=2.06807;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219594;QR=66492;RO=1863;RPL=6149;RPP=13322.9;RPPR=4048.46;RPR=5;RUN=1;SAF=6153;SAP=13357.6;SAR=1;SRF=1863;SRP=4048.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:30,12:30:1076:12:428:-26.2155,0,-84.5096	0/1:61:32,29:32:1148:29:1040:-75.5062,0,-85.267	1/1:66:0,66:0:0:66:2359:-212.515,-19.868,0	1/1:166:0,166:0:0:166:5943:-534.961,-49.971,0	0/1:67:31,36:31:1108:36:1278:-95.1434,0,-79.862	0/1:52:10,42:10:360:42:1474:-117.299,0,-17.0907	1/1:179:0,178:0:0:178:6344:-570.784,-53.5833,0	1/1:83:0,83:0:0:83:2964:-266.95,-24.9855,0	1/1:108:0,108:0:0:108:3862:-347.731,-32.5112,0	1/1:119:0,119:0:0:119:4252:-382.854,-35.8226,0	1/1:89:0,89:0:0:89:3181:-286.507,-26.7917,0	1/1:93:0,93:0:0:93:3303:-297.444,-27.9958,0	0/1:85:47,38:47:1658:38:1348:-96.0217,0,-123.919	1/1:70:0,70:0:0:70:2489:-224.253,-21.0721,0	0/1:70:33,37:33:1184:37:1328:-98.7455,0,-85.7962	1/1:56:0,56:0:0:56:1988:-179.131,-16.8577,0	1/1:61:1,60:1:36:60:2144:-189.6,-14.7646,0	1/1:56:0,56:0:0:56:1997:-179.985,-16.8577,0	1/1:57:0,57:0:0:57:1993:-179.62,-17.1587,0	0/1:202:109,92:109:3904:92:3304:-236.678,0,-290.687	0/1:154:86,68:86:3055:68:2432:-172.75,0,-228.819	0/1:96:69,27:69:2450:27:964:-58.1779,0,-191.855	0/1:80:40,40:40:1440:40:1436:-105.449,0,-105.815	1/1:128:7,121:7:252:121:4336:-367.38,-15.5029,0	0/1:88:52,36:52:1864:36:1292:-90.0885,0,-141.549	1/1:298:0,297:0:0:297:10646:-957.672,-89.4059,0	1/1:142:0,142:0:0:142:5034:-453.083,-42.7463,0	1/1:39:0,39:0:0:39:1404:-126.65,-11.7402,0	0/1:267:147,120:147:5268:120:4290:-305.896,0,-393.881	1/1:84:2,82:2:72:82:2939:-257.893,-18.4498,0	0/1:91:46,45:46:1652:45:1608:-117.608,0,-121.575	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:104:-9.68121,-0.90309,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:190:1,189:1:36:189:6728:-601.987,-53.5974,0	1/1:101:0,101:0:0:101:3602:-324.372,-30.404,0	1/1:108:0,108:0:0:108:3853:-346.717,-32.5112,0	1/1:2:0,2:0:0:2:72:-6.8351,-0.60206,0	1/1:109:0,109:0:0:109:3874:-348.597,-32.8123,0	0/1:36:23,13:23:816:13:464:-31.2604,0,-62.9246	1/1:94:0,94:0:0:94:3376:-304.045,-28.2968,0	1/1:81:0,81:0:0:81:2886:-259.945,-24.3834,0	0/1:94:46,48:46:1629:48:1720:-126.786,0,-118.6	0/1:99:54,45:54:1921:45:1616:-115.922,0,-143.363	1/1:66:0,66:0:0:66:2367:-213.286,-19.868,0	0/1:113:53,60:53:1896:60:2139:-158.759,0,-136.902	1/1:135:0,135:0:0:135:4816:-433.569,-40.6391,0	1/1:86:0,86:0:0:86:3092:-278.497,-25.8886,0	1/1:228:0,228:0:0:228:8130:-731.641,-68.6348,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:91:0,91:0:0:91:3225:-290.089,-27.3937,0	0/1:54:29,25:29:1036:25:900:-65.0654,0,-77.2979	0/1:14:9,5:9:324:5:176:-11.9697,0,-25.2914	0/1:89:42,47:42:1484:47:1680:-123.899,0,-107.06	0/1:106:65,41:65:2324:41:1467:-100.411,0,-177.511	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:17:0,17:0:0:17:603:-54.5995,-5.11751,0	0/1:60:35,25:35:1241:25:900:-63.2546,0,-93.9307	1/1:98:2,96:2:72:96:3375:-296.982,-22.6642,0	1/1:8:0,8:0:0:8:288:-26.265,-2.40824,0	0/1:137:73,64:73:2612:64:2274:-163.679,0,-194.087	0/1:106:55,51:55:1968:51:1823:-132.439,0,-145.486	0/1:70:35,35:35:1248:35:1260:-92.6206,0,-91.5528	0/1:57:20,37:20:720:37:1311:-101.118,0,-47.9701	1/1:103:0,103:0:0:103:3673:-330.763,-31.0061,0	1/1:95:0,95:0:0:95:3403:-306.473,-28.5979,0	1/1:39:0,39:0:0:39:1395:-125.842,-11.7402,0	1/1:69:0,69:0:0:69:2463:-221.869,-20.7711,0	0/1:72:33,39:33:1175:39:1395:-104.174,0,-84.3828	1/1:19:0,19:0:0:19:684:-61.888,-5.71957,0	1/1:95:0,95:0:0:95:3405:-306.646,-28.5979,0	1/1:52:0,52:0:0:52:1850:-166.773,-15.6536,0	1/1:144:0,144:0:0:144:5127:-461.528,-43.3483,0	0/1:136:70,66:70:2503:66:2358:-171.529,0,-184.582	0/1:66:33,33:33:1176:33:1169:-85.5413,0,-86.2798	1/1:59:0,59:0:0:59:2103:-189.522,-17.7608,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:75:35,40:35:1256:40:1432:-106.573,0,-90.768	0/1:81:41,40:41:1476:40:1424:-104.052,0,-108.753	1/1:192:0,192:0:0:192:6876:-618.864,-57.7978,0	0/1:94:49,45:49:1737:45:1589:-114.99,0,-128.316	1/1:48:0,48:0:0:48:1720:-155.081,-14.4494,0	1/1:85:0,85:0:0:85:3005:-270.656,-25.5876,0	0/1:147:75,72:75:2666:72:2555:-185.3,0,-195.934	1/1:52:0,52:0:0:52:1845:-166.319,-15.6536,0	0/1:59:32,26:32:1135:26:932:-66.4782,0,-84.7743	0/1:77:39,38:39:1396:38:1368:-100.233,0,-102.76	0/1:50:27,23:27:950:23:828:-59.7772,0,-70.7619	0/1:127:66,61:66:2341:61:2160:-156.418,0,-172.717	0/1:94:64,30:64:2287:30:1067:-68.0374,0,-177.794	1/1:47:0,47:0:0:47:1680:-151.486,-14.1484,0	1/1:105:0,105:0:0:105:3743:-336.978,-31.6082,0
chr05	176826	.	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chr05	231865	.	C	T	364984	PASS	AB=0.502717;ABP=3.30527;AC=150;AF=0.797872;AN=188;AO=16483;CIGAR=1X;DP=18991;DPB=18991;DPRA=0;EPP=35682.6;EPPR=5397.07;GTI=2;LEN=1;MEANALT=1;MQM=59.9776;MQMR=59.9964;NS=94;NUMALT=1;ODDS=8.80012;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=589893;QR=89825;RO=2508;RPL=14;RPP=35673.9;RPPR=5397.07;RPR=16469;RUN=1;SAF=1;SAP=35786.7;SAR=16482;SRF=2;SRP=5431.71;SRR=2506;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:12,15:12:428:15:540:-40.8087,0,-30.731	0/1:265:142,123:142:5108:123:4400:-316.399,0,-380.079	1/1:224:0,224:0:0:224:8025:-722.267,-67.4307,0	1/1:249:0,249:0:0:249:8876:-798.821,-74.9565,0	0/1:79:37,42:37:1328:42:1508:-112.233,0,-96.0409	0/1:39:14,25:14:496:25:889:-68.1588,0,-33.2341	1/1:110:1,109:1:36:109:3916:-349.033,-29.515,0	1/1:186:4,182:4:144:182:6515:-573.117,-42.678,0	1/1:97:0,97:0:0:97:3463:-311.882,-29.1999,0	1/1:68:2,66:2:72:66:2376:-207.261,-13.6333,0	1/1:350:3,347:3:108:347:12430:-1108.45,-95.2853,0	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	0/1:66:37,29:37:1324:29:1040:-74.0464,0,-99.5941	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:58:36,22:36:1279:22:779:-52.9723,0,-97.9527	1/1:52:0,52:0:0:52:1857:-167.409,-15.6536,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:209:0,209:0:0:209:7503:-675.308,-62.9153,0	0/1:167:90,77:90:3216:77:2738:-196.388,0,-239.391	0/1:189:105,84:105:3743:84:3016:-214.774,0,-280.177	0/1:100:65,35:65:2328:35:1256:-83.2423,0,-179.677	0/1:118:70,48:70:2520:48:1717:-119.293,0,-191.53	1/1:136:12,124:12:432:124:4389:-355.962,-1.71888,0	0/1:63:22,41:22:788:41:1476:-114.171,0,-52.2799	1/1:339:0,339:0:0:339:12120:-1090.64,-102.049,0	1/1:178:0,178:0:0:178:6372:-573.57,-53.5833,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:276:148,128:148:5312:128:4588:-329.999,0,-395.128	1/1:592:18,574:18:644:574:20471:-1783.6,-119.919,0	0/1:283:158,125:158:5660:125:4475:-317.726,0,-424.328	1/1:464:8,456:8:288:456:16344:-1444.35,-113.411,0	1/1:654:0,654:0:0:654:23362:-2101.95,-196.874,0	1/1:659:3,656:3:108:656:23469:-2101.46,-188.304,0	1/1:1245:1,1244:1:36:1244:44536:-4002.98,-371.184,0	1/1:281:4,277:4:140:277:9899:-877.904,-71.6449,0	1/1:170:0,170:0:0:170:6067:-546.127,-51.1751,0	1/1:255:0,255:0:0:255:9108:-819.691,-76.7627,0	1/1:397:0,397:0:0:397:14243:-1281.62,-119.509,0	1/1:488:0,488:0:0:488:17476:-1572.46,-146.903,0	1/1:233:0,233:0:0:233:8341:-750.695,-70.14,0	0/1:95:13,82:13:460:82:2935:-235.786,0,-13.1375	1/1:206:0,206:0:0:206:7368:-663.166,-62.0122,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	0/1:90:53,37:53:1887:37:1313:-91.377,0,-143.015	0/1:101:43,58:43:1532:58:2069:-156.076,0,-107.769	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	0/1:161:88,73:88:3156:73:2607:-186.412,0,-235.799	1/1:99:0,99:0:0:99:3549:-319.617,-29.802,0	1/1:203:0,203:0:0:203:7240:-651.651,-61.1091,0	1/1:136:0,136:0:0:136:4869:-438.358,-40.9401,0	1/1:494:7,487:7:252:487:17450:-1546.6,-125.68,0	1/1:120:0,120:0:0:120:4300:-387.174,-36.1236,0	0/1:36:21,15:21:756:15:536:-37.7377,0,-57.5301	1/1:426:9,417:9:324:417:14875:-1308.65,-98.7329,0	0/1:121:67,54:67:2386:54:1919:-136.561,0,-178.572	0/1:38:16,22:16:576:22:785:-59.5346,0,-40.7358	1/1:418:3,415:3:108:415:14880:-1328.48,-115.755,0	1/1:818:0,818:0:0:818:29334:-2639.17,-246.243,0	0/1:112:56,56:56:2004:56:2008:-147.278,0,-146.918	1/1:61:0,61:0:0:61:2168:-195.385,-18.3628,0	1/1:577:2,575:2:72:575:20595:-1846.18,-166.858,0	0/0:148:136,12:136:4872:12:428:0,-5.69363,-399.774	0/1:270:126,144:126:4524:144:5164:-383.621,0,-326.048	0/1:101:53,48:53:1908:48:1717:-124.411,0,-141.594	0/1:67:41,26:41:1464:26:915:-62.4951,0,-111.887	1/1:252:1,251:1:36:251:8971:-803.768,-72.2613,0	1/1:96:3,93:3:108:93:3333:-290.112,-18.8237,0	1/1:195:0,195:0:0:195:7005:-630.484,-58.7009,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	0/1:90:45,45:45:1616:45:1614:-118.457,0,-118.637	1/1:330:0,330:0:0:330:11776:-1059.67,-99.3399,0	1/1:90:0,90:0:0:90:3219:-289.931,-27.0927,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:129:0,129:0:0:129:4601:-414.232,-38.8329,0	0/1:241:141,100:141:5064:100:3584:-250.217,0,-383.355	0/1:116:53,63:53:1887:63:2260:-168.743,0,-135.188	1/1:119:1,118:1:36:118:4236:-377.82,-32.2243,0	1/1:1007:2,1005:2:72:1005:35962:-3228.58,-296.3,0	0/1:137:79,58:79:2832:58:2080:-146.229,0,-213.877	0/1:109:54,55:54:1924:55:1976:-145.302,0,-140.625	1/1:120:0,120:0:0:120:4283:-385.646,-36.1236,0	0/1:114:82,32:82:2903:32:1144:-68.9521,0,-227.187	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	0/1:138:82,56:82:2940:56:2016:-140.171,0,-223.292	1/1:42:0,42:0:0:42:1511:-136.285,-12.6433,0	0/1:92:53,39:53:1896:39:1396:-98.2443,0,-143.223	0/1:76:40,36:40:1440:36:1277:-92.3544,0,-107.019	0/1:128:26,102:26:936:102:3664:-291.431,0,-46.0276	0/1:352:56,296:56:2012:296:10613:-849.113,0,-75.3905	0/1:86:64,22:64:2304:22:788:-45.3562,0,-181.732	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0
chr05	231871	.	C	T	41871	PASS	AB=0.487158;ABP=9.81455;AC=39;AF=0.207447;AN=188;AO=2519;CIGAR=1X;DP=18876;DPB=18876;DPRA=1.34613;EPP=5198.53;EPPR=31783.8;GTI=3;LEN=1;MEANALT=1.07018;MQM=59.9964;MQMR=59.983;NS=94;NUMALT=1;ODDS=14.3003;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89958;QR=584893;RO=16352;RPL=2487;RPP=5198.53;RPPR=31792;RPR=32;RUN=1;SAF=2;SAP=5455.59;SAR=2517;SRF=1;SRP=35502.2;SRR=16351;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:14,11:14:492:11:396:-28.457,0,-37.0866	0/1:264:126,138:126:4501:138:4943:-365.54,0,-325.786	0/0:218:218,0:218:7836:0:0:0,-65.6245,-705.264	0/0:246:246,0:246:8797:0:0:0,-74.0534,-791.714	0/1:79:40,38:40:1440:38:1337:-96.788,0,-106.058	0/1:39:24,15:24:843:15:536:-36.8346,0,-64.4478	0/0:107:106,1:106:3800:1:36:0,-28.6119,-338.599	0/0:186:182,4:182:6480:4:144:0,-42.678,-569.974	0/0:96:96,0:96:3379:0:0:0,-28.8989,-304.324	0/0:69:68,1:68:2429:1:36:0,-17.1728,-215.135	0/0:342:340,1:340:12204:1:36:0,-99.4128,-1094.59	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/1:67:29,38:29:1031:38:1364:-102.892,0,-72.9336	0/0:71:70,1:70:2499:1:36:0,-17.7749,-221.564	0/1:60:22,38:22:788:38:1361:-104.729,0,-53.183	0/0:51:51,0:51:1818:0:0:0,-15.3525,-163.9	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.1	0/0:40:40,0:40:1422:0:0:0,-12.0412,-128.276	0/0:206:206,0:206:7376:0:0:0,-62.0122,-663.887	0/1:165:76,89:76:2732:89:3188:-237.474,0,-196.452	0/1:187:82,105:82:2935:105:3736:-280.15,0,-208.091	0/1:101:34,67:34:1224:67:2396:-185.493,0,-80.063	0/1:117:48,69:48:1720:69:2472:-187.513,0,-119.865	0/1:131:118,13:118:4200:13:468:-3.02472,0,-338.746	0/1:62:40,22:40:1440:22:777:-51.5865,0,-111.234	0/0:334:334,0:334:11959:0:0:0,-100.544,-1076.16	0/0:174:174,0:174:6213:0:0:0,-52.3792,-559.267	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:285:131,154:131:4681:154:5489:-408.344,0,-335.656	0/0:593:575,17:575:20586:17:612:0,-123.156,-1796.81	0/1:286:126,160:126:4515:160:5660:-423.427,0,-320.422	0/0:462:455,7:455:16234:7:252:0,-116.047,-1437.7	0/0:646:646,0:646:23083:0:0:0,-194.465,-2076.83	0/0:644:641,3:641:22921:3:104:0,-184.161,-2052.56	0/0:1236:1235,1:1235:44173:1:36:0,-368.475,-3969.84	0/0:280:276,4:276:9860:4:144:0,-70.9748,-874.026	0/0:166:166,0:166:5951:0:0:0,-49.971,-535.64	0/0:259:259,0:259:9269:0:0:0,-77.9668,-834.176	0/0:396:396,0:396:14199:0:0:0,-119.208,-1277.66	0/0:485:484,1:484:17340:1:36:0,-142.401,-1556.63	0/0:234:234,0:234:8375:0:0:0,-70.441,-753.752	0/1:94:81,13:81:2912:13:464:-13.8007,0,-234.018	0/0:202:201,0:201:7200:0:0:0,-60.507,-647.693	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/1:89:36,53:36:1292:53:1896:-144.126,0,-89.7921	0/1:102:59,43:59:2108:43:1518:-106.205,0,-159.283	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/1:166:77,89:77:2749:89:3168:-235.373,0,-197.68	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/0:201:201,0:201:7140:0:0:0,-60.507,-642.655	0/0:130:130,0:130:4640:0:0:0,-39.1339,-417.762	0/0:487:480,7:480:17199:7:240:0,-124.667,-1525.61	0/0:119:119,0:119:4254:0:0:0,-35.8226,-383.038	0/1:35:15,20:15:540:20:720:-54.5927,0,-38.4005	0/0:425:416,9:416:14874:9:324:0,-98.4319,-1308.88	0/1:122:55,67:55:1980:67:2400:-179.531,0,-141.749	0/1:37:22,15:22:792:15:532:-37.075,0,-60.4676	0/0:414:411,3:411:14675:3:108:0,-114.551,-1310.39	0/0:814:814,0:814:29105:0:0:0,-245.038,-2618.55	0/1:111:56,55:56:2004:55:1964:-143.621,0,-147.219	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:564:563,1:563:20146:1:36:0,-166.183,-1809.05	1/1:149:12,137:12:432:137:4892:-401.21,-5.63227,0	0/1:272:148,124:148:5292:124:4432:-317.171,0,-394.533	0/1:104:48,56:48:1724:56:1996:-148.607,0,-124.138	0/1:67:25,42:25:892:42:1501:-115.214,0,-60.4307	0/0:250:249,1:249:8866:1:36:0,-71.6592,-794.327	0/0:97:94,3:94:3368:3:108:0,-19.1247,-293.261	0/0:194:194,0:194:6954:0:0:0,-58.3998,-625.917	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:89:45,44:45:1616:44:1576:-115.34,0,-118.938	0/0:329:329,0:329:11791:0:0:0,-99.0389,-1061.02	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.216	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:123:123,0:123:4393:0:0:0,-37.0267,-395.542	0/1:246:102,144:102:3660:144:5164:-390.846,0,-255.55	0/1:121:66,55:66:2368:55:1947:-139.081,0,-176.953	0/0:120:119,1:119:4240:1:36:0,-32.5253,-378.181	0/0:1004:1001,2:1001:35861:2:72:0,-295.456,-3219.49	0/1:138:57,81:57:2025:81:2893:-219.064,0,-140.979	0/1:112:57,55:57:2033:55:1976:-144.399,0,-149.525	0/0:121:121,0:121:4314:0:0:0,-36.4246,-388.389	0/1:112:31,81:31:1116:81:2904:-227.88,0,-67.0363	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:138:56,82:56:2003:82:2940:-223.292,0,-139.001	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:93:38,55:38:1351:55:1972:-149.759,0,-93.8938	0/1:73:34,39:34:1220:39:1400:-104.324,0,-88.1316	0/1:127:102,25:102:3636:25:888:-42.0082,0,-289.212	0/1:348:293,55:293:10481:55:1968:-72.6366,0,-838.447	0/1:86:22,64:22:784:64:2292:-180.653,0,-44.9953	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09
chr05	231888	.	G	A	40554.1	PASS	AB=0.497617;ABP=3.23798;AC=38;AF=0.202128;AN=188;AO=2511;CIGAR=1X;DP=18956;DPB=18956;DPRA=1.28461;EPP=5438.22;EPPR=35649.9;GTI=2;LEN=1;MEANALT=1.10909;MQM=59.9964;MQMR=59.9791;NS=94;NUMALT=1;ODDS=4.03704;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89924;QR=588023;RO=16436;RPL=2511;RPP=5455.58;RPPR=35658.6;RPR=0;RUN=1;SAF=2;SAP=5438.22;SAR=2509;SRF=1;SRP=35684.6;SRR=16435;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:14,11:14:496:11:388:-27.731,0,-37.4485	0/1:263:123,140:123:4408:140:5032:-373.845,0,-317.721	0/0:220:220,0:220:7880:0:0:0,-66.2266,-709.226	0/0:244:244,0:244:8727:0:0:0,-73.4513,-785.421	0/1:79:42,37:42:1504:37:1324:-95.6807,0,-111.873	0/1:38:23,15:23:824:15:540:-37.4974,0,-62.8153	0/0:108:107,1:107:3828:1:36:0,-28.913,-341.119	0/0:187:183,4:183:6535:4:144:0,-42.979,-574.921	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.241	0/0:69:68,1:68:2440:1:36:0,-17.1728,-216.257	0/0:345:344,1:344:12257:1:36:0,-100.257,-1099.23	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:67:29,38:29:1031:38:1364:-102.892,0,-72.9336	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/1:62:23,39:23:828:39:1395:-107.184,0,-56.1803	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/0:67:67,0:67:2365:0:0:0,-20.169,-213.108	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:208:208,0:208:7476:0:0:0,-62.6142,-672.879	0/1:169:78,91:78:2771:91:3256:-242.387,0,-198.758	0/1:189:85,104:85:3036:104:3685:-274.96,0,-216.574	0/1:101:34,67:34:1220:67:2391:-185.043,0,-79.7028	0/1:115:47,67:47:1688:67:2399:-181.637,0,-117.676	0/0:134:122,12:122:4360:12:432:0,-1.11682,-353.354	0/1:65:42,23:42:1500:23:813:-53.9222,0,-115.728	0/0:332:332,0:332:11912:0:0:0,-99.942,-1071.93	0/0:177:177,0:177:6340:0:0:0,-53.2823,-570.691	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:280:129,151:129:4608:151:5393:-401.212,0,-330.597	0/0:596:579,16:579:20708:16:576:0,-127.298,-1811.03	0/1:288:125,163:125:4480:163:5833:-438.384,0,-316.672	0/0:462:455,7:455:16297:7:252:0,-116.047,-1443.37	0/0:651:651,0:651:23305:0:0:0,-195.971,-2096.8	0/0:652:649,3:649:23172:3:108:0,-186.196,-2074.78	0/0:1238:1236,1:1236:44216:1:36:0,-369.136,-3973.71	0/0:286:281,5:281:10054:5:180:0,-69.5425,-888.241	0/0:171:171,0:171:6130:0:0:0,-51.4761,-551.797	0/0:257:257,0:257:9212:0:0:0,-77.3647,-829.049	0/0:394:394,0:394:14118:0:0:0,-118.606,-1270.38	0/0:489:489,0:489:17501:0:0:0,-147.204,-1574.71	0/0:234:234,0:234:8387:0:0:0,-70.441,-754.833	0/1:93:81,12:81:2904:12:432:-11.2254,0,-233.6	0/0:206:206,0:206:7363:0:0:0,-62.0122,-662.718	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:87:36,51:36:1283:51:1836:-139.331,0,-89.583	0/1:100:58,42:58:2084:42:1500:-105.192,0,-157.724	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:164:76,88:76:2708:88:3140:-233.458,0,-194.596	0/0:98:98,0:98:3492:0:0:0,-29.5009,-314.492	0/0:201:201,0:201:7220:0:0:0,-60.507,-649.848	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.869	0/0:491:484,7:484:17352:7:248:0,-125.142,-1538.15	0/0:122:122,0:122:4371:0:0:0,-36.7257,-393.563	0/1:36:15,21:15:540:21:747:-56.7172,0,-38.0995	0/0:425:415,9:415:14821:9:324:0,-98.4907,-1304.08	0/1:119:54,65:54:1928:65:2336:-174.677,0,-137.974	0/1:40:23,17:23:824:17:608:-43.0108,0,-62.4421	0/0:416:411,4:411:14722:4:144:0,-111.974,-1311.03	0/0:822:822,0:822:29416:0:0:0,-247.447,-2646.5	0/1:109:56,53:56:2003:53:1881:-136.754,0,-147.731	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:572:571,1:571:20390:1:36:0,-168.591,-1830.97	1/1:147:12,135:12:432:135:4836:-396.172,-5.03021,0	0/1:269:146,123:146:5228:123:4411:-316.184,0,-389.681	0/1:103:47,56:47:1665:56:2000:-149.268,0,-119.129	0/1:68:26,42:26:928:42:1504:-115.185,0,-63.3682	0/0:255:254,1:254:9099:1:36:0,-73.1644,-815.285	0/0:96:93,3:93:3344:3:108:0,-18.8237,-291.101	0/0:198:198,0:198:7073:0:0:0,-59.6039,-636.606	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:91:46,45:46:1652:45:1612:-117.976,0,-121.575	0/0:323:323,0:323:11527:0:0:0,-97.2327,-1037.31	0/0:89:89,0:89:3183:0:0:0,-26.7917,-286.693	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:129:129,0:129:4624:0:0:0,-38.8329,-416.323	0/1:244:99,145:99:3552:145:5192:-393.967,0,-246.436	0/1:120:65,55:65:2328:55:1976:-141.991,0,-173.656	0/0:117:116,1:116:4151:1:36:0,-31.6222,-370.174	0/0:1002:1000,2:1000:35782:2:72:0,-294.795,-3212.39	0/1:140:59,81:59:2111:81:2916:-220.53,0,-148.114	0/1:110:56,54:56:1996:54:1936:-141.403,0,-146.801	0/0:120:117,0:117:4192:0:0:0,-35.2205,-377.069	0/1:115:32,83:32:1143:83:2980:-233.813,0,-68.5602	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.903	0/1:135:54,80:54:1936:80:2880:-218.738,0,-133.819	0/0:43:43,0:43:1522:0:0:0,-12.9443,-137.272	0/1:95:39,56:39:1392:56:2008:-152.395,0,-96.9812	0/1:76:37,39:37:1316:39:1400:-103.421,0,-95.8635	0/1:126:103,23:103:3687:23:828:-36.9143,0,-294.101	0/1:351:295,56:295:10524:56:2008:-75.3318,0,-841.414	0/1:84:20,64:20:707:64:2304:-182.334,0,-38.6681	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873
chr05	239499	.	A	G	26039.2	PASS	AB=0.642333;ABP=410.366;AC=44;AF=0.23913;AN=184;AO=1498;CIGAR=1X;DP=4338;DPB=4338;DPRA=1.37435;EPP=3255.88;EPPR=6161.31;GTI=9;LEN=1;MEANALT=1.07843;MQM=59.9893;MQMR=59.8865;NS=92;NUMALT=1;ODDS=0.334975;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52995;QR=101316;RO=2836;RPL=1498;RPP=3255.88;RPPR=6161.31;RPR=0;RUN=1;SAF=1498;SAP=3255.88;SAR=0;SRF=2836;SRP=6161.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:2,13:2:72:13:460:-37.2199,0,-2.32127	0/1:74:28,46:28:1000:46:1633:-124.982,0,-68.031	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.541	0/1:55:16,38:16:572:38:1343:-104.554,0,-35.1981	0/1:19:6,13:6:216:13:464:-36.3779,0,-14.0709	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.971	0/0:28:27,1:27:945:1:36:0,-4.83056,-81.7627	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.1766	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/1:50:28,22:28:992:22:776:-55.1107,0,-74.5429	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.102	0/1:48:21,27:21:735:27:947:-71.0943,0,-52.022	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:47:47,0:47:1675:0:0:0,-14.1484,-150.846	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3602	0/0:18:17,1:17:612:1:36:0,-1.82026,-51.8152	0/1:122:25,97:25:900:97:3420:-271.287,0,-44.5954	0/1:87:33,54:33:1188:54:1903:-145.357,0,-81.039	0/1:101:19,82:19:684:82:2904:-231.192,0,-31.4863	0/1:40:17,23:17:612:23:813:-61.4486,0,-43.3722	0/0:43:40,3:40:1432:3:108:0,-2.86912,-119.102	0/1:33:5,28:5:180:28:966:-77.3157,0,-6.61807	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.378	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.048	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9813	0/1:252:66,185:66:2356:185:6593:-517.662,0,-136.452	0/0:64:63,1:63:2239:1:36:0,-15.6676,-198.175	0/1:75:35,40:35:1248:40:1420:-105.52,0,-90.0476	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:8:5,3:5:176:3:104:-7.29457,0,-13.7685	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:150:149,1:149:5327:1:36:0,-41.5562,-475.775	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.415	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.974	0/1:25:6,19:6:212:19:671:-53.1909,0,-11.899	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.866	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.411	0/1:46:27,19:27:964:19:676:-47.3206,0,-73.2294	0/1:35:9,26:9:320:26:910:-71.678,0,-18.6063	0/0:55:54,1:54:1940:1:36:0,-12.9584,-171.276	0/1:75:13,62:13:468:62:2190:-174.785,0,-19.8824	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.84	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.956	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:15:8,7:8:288:7:247:-18.0574,0,-21.752	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.0469	0/1:31:8,23:8:288:23:820:-64.7906,0,-16.9355	0/1:27:5,22:5:180:22:788:-63.117,0,-8.42425	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:25:10,15:10:343:15:517:-39.3297,0,-23.6748	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:124:45,78:45:1600:78:2767:-212.034,0,-107.052	0/1:62:28,34:28:1008:34:1224:-91.8008,0,-72.3725	0/1:43:13,30:13:468:30:1051:-81.954,0,-29.5154	0/1:46:23,23:23:828:23:815:-59.8234,0,-60.9967	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.042	0/0:49:48,1:48:1716:1:36:0,-11.1522,-151.127	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:53:27,26:27:972:26:920:-67.1625,0,-71.8433	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.805	0/1:106:24,82:24:852:82:2930:-232.026,0,-45.0912	0/1:56:21,35:21:748:35:1243:-95.3162,0,-50.7876	0/0:14:13,1:13:455:1:36:0,-0.616145,-37.6837	.:.:.:.:.:.:.:.	0/1:67:12,54:12:432:54:1909:-151.858,0,-18.9934	0/1:54:15,39:15:536:39:1375:-107.792,0,-32.3192	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.531	0/1:102:55,47:55:1963:47:1632:-116.46,0,-146.237	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:104:54,50:54:1932:50:1767:-128.005,0,-142.849	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.252	0/1:49:27,22:27:960:22:750:-53.0623,0,-71.9576	0/1:41:25,16:25:891:16:568:-39.1096,0,-68.1665	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	0/1:52:17,35:17:608:35:1235:-95.7999,0,-39.3985	0/1:49:19,30:19:671:30:1064:-81.3212,0,-45.9653	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976
chr05	256988	.	T	G	24864.7	PASS	AB=0.485668;ABP=8.54983;AC=44;AF=0.236559;AN=186;AO=1514;CIGAR=1X;DP=7575;DPB=7575;DPRA=0.796703;EPP=3290.62;EPPR=13160;GTI=2;LEN=1;MEANALT=1;MQM=59.9604;MQMR=59.981;NS=93;NUMALT=1;ODDS=1.66942;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54005;QR=217079;RO=6059;RPL=0;RPP=3290.62;RPPR=13160;RPR=1514;RUN=1;SAF=1514;SAP=3290.62;SAR=0;SRF=6059;SRP=13160;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:13,20:13:455:20:720:-55.1948,0,-31.348	0/1:69:36,33:36:1292:33:1176:-85.3767,0,-95.8127	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:40:23,17:23:824:17:593:-41.6535,0,-62.4421	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:125:124,1:124:4424:1:36:0,-34.0305,-394.732	0/0:74:74,0:74:2612:0:0:0,-22.2762,-235.327	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/1:79:39,40:39:1396:40:1440:-106.107,0,-102.158	0/0:86:86,0:86:3079:0:0:0,-25.8886,-277.338	0/1:75:41,34:41:1476:34:1216:-87.1693,0,-110.559	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.459	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.899	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:153:85,68:85:3060:68:2440:-173.795,0,-229.568	0/1:106:55,51:55:1972:51:1824:-132.532,0,-145.846	0/1:58:20,38:20:716:38:1323:-101.904,0,-47.308	0/1:55:17,38:17:612:38:1348:-105.064,0,-38.8568	0/0:61:59,2:59:2112:2:72:0,-11.5261,-183.512	0/1:82:31,51:31:1103:51:1832:-140.476,0,-74.8953	0/0:340:340,0:340:12188:0:0:0,-102.35,-1096.7	0/0:151:151,0:151:5404:0:0:0,-45.4555,-486.491	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:141:71,70:71:2537:70:2483:-181.279,0,-186.134	0/0:104:102,2:102:3656:2:72:0,-24.4704,-322.407	0/1:55:24,31:24:860:31:1104:-83.114,0,-61.1652	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3584	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:204:204,0:204:7298:0:0:0,-61.4101,-656.87	0/0:199:197,0:197:7037:0:0:0,-59.3029,-633.181	0/0:77:77,0:77:2763:0:0:0,-23.1793,-248.91	.:.:.:.:.:.:.:.	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.812	0/1:55:21,34:21:756:34:1216:-93.1899,0,-51.8106	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:74:39,35:39:1400:35:1256:-91.0691,0,-104.023	0/1:72:45,27:45:1604:27:964:-65.4027,0,-122.976	0/0:79:79,0:79:2822:0:0:0,-23.7814,-254.218	0/1:146:86,60:86:3076:60:2125:-147.493,0,-233.118	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.372	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.123	0/0:117:117,0:117:4193:0:0:0,-35.2205,-377.549	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:36:19,17:19:680:17:612:-44.5764,0,-50.6921	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:82:51,31:51:1836:31:1108:-75.3465,0,-140.836	0/1:24:17,7:17:612:7:252:-15.8042,0,-48.1887	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:10:9,1:9:320:1:32:-0.189013,0,-26.1321	0/1:84:44,40:44:1576:40:1432:-103.891,0,-116.845	0/0:155:155,0:155:5560:0:0:0,-46.6596,-500.523	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:148:80,68:80:2838:68:2417:-173.224,0,-211.08	0/1:134:89,45:89:3184:45:1620:-105.752,0,-246.446	0/1:66:31,35:31:1116:35:1256:-93.4773,0,-80.8837	0/1:40:22,18:22:784:18:648:-46.6107,0,-58.8427	0/0:167:167,0:167:5996:0:0:0,-50.272,-539.743	0/0:85:84,1:84:3020:1:36:0,-21.9893,-268.432	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:81:45,36:45:1616:36:1270:-90.2179,0,-121.302	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:141:141,0:141:5052:0:0:0,-42.4452,-454.825	0/1:120:57,63:57:2052:63:2260:-167.539,0,-148.828	0/1:73:39,34:39:1396:34:1204:-86.6907,0,-103.026	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:82:42,40:42:1512:40:1426:-103.953,0,-111.69	0/1:65:42,23:42:1512:23:824:-54.9164,0,-116.808	0/0:195:195,0:195:6983:0:0:0,-58.7008,-628.533	0/1:128:58,70:58:2076:70:2470:-184.02,0,-148.579	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:140:65,75:65:2332:75:2688:-200.02,0,-167.995	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/1:82:41,41:41:1476:41:1451:-106.201,0,-108.452	0/1:85:55,30:55:1971:30:1080:-71.9257,0,-152.077	0/1:65:33,32:33:1188:32:1148:-84.0629,0,-87.6616	0/1:119:53,66:53:1900:66:2347:-175.666,0,-135.455	0/1:85:28,57:28:996:57:2036:-157.925,0,-64.3673	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788
chr05	260034	.	T	C	13837.5	PASS	AB=0.477945;ABP=10.5771;AC=45;AF=0.239362;AN=188;AO=861;CIGAR=1X;DP=3925;DPB=3925;DPRA=0.92402;EPP=1872.65;EPPR=6654.23;GTI=3;LEN=1;MEANALT=1;MQM=59.9721;MQMR=59.9869;NS=94;NUMALT=1;ODDS=0.802693;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30632;QR=108210;RO=3063;RPL=0;RPP=1872.65;RPPR=6654.23;RPR=861;RUN=1;SAF=0;SAP=1872.65;SAR=861;SRF=0;SRP=6654.23;SRR=3063;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:10,15:10:352:15:540:-41.4108,0,-24.4924	0/1:26:19,7:19:676:7:252:-15.2022,0,-53.3412	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:70:70,0:70:2471:0:0:0,-21.0721,-222.645	0/1:12:5,7:5:165:7:252:-19.4166,0,-11.5612	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/0:33:33,0:33:1164:0:0:0,-9.93399,-105.067	0/0:42:42,0:42:1479:0:0:0,-12.6433,-133.404	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.904	0/0:48:48,0:48:1681:0:0:0,-14.4494,-151.574	0/0:87:87,0:87:3042:0:0:0,-26.1896,-274.011	0/1:62:36,26:36:1296:26:932:-65.535,0,-98.2801	0/0:39:39,0:39:1372:0:0:0,-11.7402,-123.779	0/1:51:26,25:26:916:25:887:-64.7956,0,-67.4039	0/0:49:49,0:49:1735:0:0:0,-14.7505,-156.434	0/0:22:21,1:21:752:1:36:0,-3.02438,-64.408	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/0:20:19,1:19:671:1:36:0,-2.42232,-57.1175	0/1:30:12,18:12:428:18:648:-49.621,0,-29.8279	0/1:72:41,31:41:1422:31:1097:-77.3639,0,-106.597	0/1:47:19,28:19:676:28:993:-75.5341,0,-47.0196	0/1:36:16,20:16:564:20:720:-54.2917,0,-40.2532	0/1:15:12,3:12:417:3:108:-5.55972,0,-33.3448	0/1:29:22,7:22:788:7:252:-14.2991,0,-62.5149	0/0:63:63,0:63:2225:0:0:0,-18.9649,-200.511	0/0:91:91,0:91:3220:0:0:0,-27.3937,-290.023	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:88:50,38:50:1769:38:1351:-95.399,0,-133.001	0/1:41:37,4:37:1300:4:140:-0.602348,0,-104.956	0/1:44:29,15:29:1032:15:540:-35.6912,0,-79.9482	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.8978	0/1:10:6,4:6:207:4:140:-9.93428,0,-15.9566	0/0:152:152,0:152:5349:0:0:0,-45.7566,-481.549	0/0:45:45,0:45:1588:0:0:0,-13.5463,-143.21	0/0:44:44,0:44:1555:0:0:0,-13.2453,-140.241	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:47:47,0:47:1646:0:0:0,-14.1484,-148.424	0/1:33:20,13:20:711:13:464:-32.1635,0,-54.3817	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:34:34,0:34:1199:0:0:0,-10.235,-108.215	0/1:62:24,38:24:835:38:1347:-102.866,0,-56.8027	0/1:51:25,26:25:884:26:903:-66.2289,0,-64.5258	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.184	0/1:57:38,19:38:1360:19:667:-43.1941,0,-105.542	0/0:40:40,0:40:1416:0:0:0,-12.0412,-127.737	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:50:49,1:49:1729:1:36:0,-11.4532,-152.295	0/1:24:11,13:11:396:13:460:-34.5107,0,-28.758	0/1:23:7,16:7:252:16:572:-44.8897,0,-16.1053	0/1:48:27,21:27:964:21:737:-52.201,0,-72.6274	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:49:31,18:31:1100:18:629:-42.1833,0,-84.5598	0/0:86:86,0:86:3028:0:0:0,-25.8886,-272.752	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:52:23,29:23:820:29:1029:-77.2676,0,-58.469	0/1:65:31,34:31:1104:34:1220:-90.5399,0,-80.1037	0/1:27:11,16:11:396:16:572:-43.6856,0,-27.8549	0/1:30:15,15:15:532:15:536:-39.5439,0,-39.1822	0/0:36:36,0:36:1264:0:0:0,-10.8371,-114.063	0/0:72:72,0:72:2556:0:0:0,-21.6742,-230.291	0/0:39:39,0:39:1361:0:0:0,-11.7402,-122.786	0/0:13:13,0:13:452:0:0:0,-3.91339,-41.0111	0/1:68:32,36:32:1117:36:1284:-95.3934,0,-80.3654	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:78:78,0:78:2764:0:0:0,-23.4803,-249.003	0/0:41:41,0:41:1456:0:0:0,-12.3422,-131.336	0/0:83:83,0:83:2937:0:0:0,-24.9855,-264.565	0/1:43:21,22:21:733:22:776:-57.2165,0,-53.3454	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:10:10,0:10:340:0:0:0,-3.0103,-30.929	0/1:32:13,19:13:464:19:668:-50.8121,0,-32.4645	0/1:24:13,11:13:460:11:388:-28.0326,0,-34.4821	0/0:83:83,0:83:2917:0:0:0,-24.9855,-262.767	0/1:55:21,34:21:752:34:1204:-92.1062,0,-51.4496	0/0:64:64,0:64:2255:0:0:0,-19.2659,-203.214	0/0:39:39,0:39:1363:0:0:0,-11.7402,-122.968	0/1:100:50,50:50:1771:50:1770:-129.479,0,-129.569	0/0:15:14,0:14:500:0:0:0,-4.21442,-45.0138	0/1:63:44,19:44:1529:19:684:-42.9254,0,-118.932	0/1:53:27,26:27:944:26:927:-67.7928,0,-69.3195	0/1:31:13,18:13:459:18:639:-48.5063,0,-32.3122	0/1:114:55,59:55:1940:59:2108:-155.672,0,-140.559	0/1:48:17,31:17:600:31:1116:-86.3023,0,-39.8798	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.674	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.86
chr05	260044	.	A	G	66401.8	PASS	AB=0.529025;ABP=16.3721;AC=142;AF=0.755319;AN=188;AO=3128;CIGAR=1X;DP=3992;DPB=3992;DPRA=14.2975;EPP=6778.02;EPPR=1876.99;GTI=4;LEN=1;MEANALT=1.01075;MQM=59.9815;MQMR=59.9479;NS=94;NUMALT=1;ODDS=1.18775;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111549;QR=30874;RO=863;RPL=2;RPP=6778.02;RPPR=1876.99;RPR=3126;RUN=1;SAF=0;SAP=6795.38;SAR=3128;SRF=0;SRP=1876.99;SRR=863;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/1:24:6,18:6:216:18:644:-51.0659,0,-12.5658	1/1:51:0,51:0:0:51:1798:-162.1,-15.3525,0	1/1:71:0,71:0:0:71:2524:-227.412,-21.3731,0	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/1:17:7,9:7:252:9:324:-24.3295,0,-17.8527	1/1:32:0,32:0:0:32:1125:-101.556,-9.63296,0	1/1:44:0,44:0:0:44:1567:-141.321,-13.2453,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:48:0,48:0:0:48:1708:-154.005,-14.4494,0	1/1:87:0,87:0:0:87:3104:-279.587,-26.1896,0	0/1:64:26,38:26:924:38:1344:-101.991,0,-64.2117	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:52:25,27:25:896:27:972:-72.1443,0,-65.3068	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:22:0,22:0:0:22:783:-70.7929,-6.62266,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:20:2,18:2:72:18:648:-52.6313,0,-0.816122	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.2574	0/1:73:34,39:34:1216:39:1374:-101.982,0,-87.7016	0/1:47:29,18:29:1036:18:636:-43.4196,0,-79.4055	0/1:34:19,15:19:680:15:540:-38.7015,0,-51.2941	0/1:16:3,13:3:108:13:455:-36.4655,0,-5.25869	0/1:29:7,22:7:252:22:784:-62.154,0,-14.2991	1/1:63:0,63:0:0:63:2243:-202.132,-18.9649,0	1/1:91:0,91:0:0:91:3249:-292.629,-27.3937,0	1/1:20:0,20:0:0:20:703:-63.593,-6.0206,0	0/1:90:37,53:37:1328:53:1900:-144.185,0,-92.7295	0/1:41:4,37:4:144:37:1315:-106.309,0,-0.971387	0/1:44:15,29:15:528:29:1030:-79.7677,0,-34.606	0/1:8:3,5:3:108:5:171:-13.3172,0,-7.66693	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:8:0,8:0:0:8:260:-23.7138,-2.40824,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:154:0,154:0:0:154:5503:-495.394,-46.3586,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:45:0,45:0:0:45:1603:-144.559,-13.5464,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	0/1:32:12,20:12:428:20:720:-55.4958,0,-29.2258	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:62:39,23:39:1400:23:806:-54.1944,0,-107.635	0/1:50:25,25:25:900:25:892:-65.5482,0,-66.2686	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	0/1:57:19,38:19:684:38:1353:-104.91,0,-44.727	1/1:40:0,40:0:0:40:1419:-128.005,-12.0412,0	1/1:41:0,41:0:0:41:1449:-130.704,-12.3422,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:52:1,51:1:36:51:1809:-159.491,-12.0553,0	0/1:24:13,11:13:460:11:396:-28.758,0,-34.5107	0/1:26:18,8:18:648:8:288:-18.4406,0,-50.8251	0/1:49:21,28:21:752:28:1008:-76.2859,0,-53.2512	0/1:11:7,4:7:237:4:144:-10.0023,0,-18.3477	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:51:18,33:18:644:33:1180:-91.1555,0,-42.9381	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:55:31,24:31:1108:24:864:-61.5259,0,-83.4734	0/1:63:34,29:34:1209:29:1040:-74.9495,0,-90.1492	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:44:0,44:0:0:44:1552:-139.971,-13.2453,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:68:36,32:36:1292:32:1133:-81.8066,0,-96.1137	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:83:0,83:0:0:83:2952:-265.912,-24.9855,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:86:0,86:0:0:86:3073:-276.799,-25.8886,0	0/1:45:22,23:22:783:23:828:-61.2978,0,-57.2466	0/1:12:7,5:7:237:5:180:-12.9397,0,-18.0467	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:31:18,13:18:640:13:453:-31.7677,0,-48.5974	0/1:23:11,12:11:396:12:420:-31.2051,0,-29.0591	1/1:88:0,88:0:0:88:3130:-281.925,-26.4906,0	0/1:59:34,25:34:1224:25:896:-63.1986,0,-92.6925	1/1:65:0,65:0:0:65:2321:-209.15,-19.567,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:93:45,48:45:1616:48:1709:-126.098,0,-117.734	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:63:19,44:19:684:44:1570:-122.627,0,-42.9254	0/1:53:25,28:25:900:28:982:-72.7371,0,-65.3664	0/1:32:18,14:18:640:14:504:-36.0651,0,-48.2964	0/1:116:60,56:60:2140:56:2008:-146.074,0,-157.949	0/1:48:32,16:32:1144:16:560:-36.2793,0,-88.8201	1/1:55:0,55:0:0:55:1964:-177.031,-16.5567,0	1/1:68:0,68:0:0:68:2435:-219.405,-20.47,0
chr05	260124	.	A	G	37491.9	PASS	AB=0.49393;ABP=4.09121;AC=43;AF=0.228723;AN=188;AO=1674;CIGAR=1X;DP=7914;DPB=7914;DPRA=0.907907;EPP=3638.06;EPPR=13494.4;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9301;MQMR=59.9954;NS=94;NUMALT=1;ODDS=0.228329;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59674;QR=223322;RO=6237;RPL=989;RPP=122.89;RPPR=300.904;RPR=685;RUN=1;SAF=989;SAP=122.89;SAR=685;SRF=3583;SRP=303.486;SRR=2654;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:30,14:30:1080:14:491:-31.2758,0,-84.2679	0/1:74:33,41:33:1184:41:1467:-109.558,0,-84.5921	0/0:81:81,0:81:2876:0:0:0,-24.3834,-259.076	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/1:40:21,19:21:756:19:680:-49.488,0,-56.326	0/1:41:17,24:17:612:24:860:-65.3796,0,-43.0712	0/0:38:37,1:37:1317:1:36:0,-7.84086,-115.232	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:169:169,0:169:6072:0:0:0,-50.8741,-546.58	0/0:184:184,0:184:6581:0:0:0,-55.3895,-592.37	0/1:143:72,71:72:2584:71:2544:-186.163,0,-189.762	0/0:231:231,0:231:8276:0:0:0,-69.5379,-744.847	0/1:158:78,80:78:2800:80:2818:-206.298,0,-204.677	0/0:127:127,0:127:4551:0:0:0,-38.2308,-409.755	0/0:155:155,0:155:5568:0:0:0,-46.6596,-501.227	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:62:34,28:34:1224:28:1008:-72.3725,0,-91.8032	0/1:112:44,68:44:1565:68:2444:-186.496,0,-107.424	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:34:21,13:21:756:13:464:-31.8487,0,-58.1322	0/0:133:133,0:133:4764:0:0:0,-40.037,-428.906	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.48	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:83:43,40:43:1521:40:1424:-103.472,0,-112.196	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.835	0/1:77:37,40:37:1309:40:1432:-105.998,0,-94.9302	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:379:379,0:379:13599:0:0:0,-114.09,-1223.69	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:126:126,0:126:4504:0:0:0,-37.9298,-405.529	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:78:78,0:78:2773:0:0:0,-23.4803,-249.81	0/1:82:48,34:48:1720:34:1207:-84.2508,0,-130.401	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:136:136,0:136:4855:0:0:0,-40.9401,-437.104	0/1:161:80,81:80:2868:81:2864:-209.532,0,-209.891	0/1:35:17,18:17:612:18:640:-47.3927,0,-44.8774	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:75:44,31:44:1576:31:1112:-77.8107,0,-119.554	0/0:45:45,0:45:1585:0:0:0,-13.5463,-142.938	0/0:86:86,0:86:3081:0:0:0,-25.8886,-277.516	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:58:36,22:36:1296:22:775:-52.6114,0,-99.4842	0/1:11:4,7:4:144:7:243:-18.8962,0,-10.0023	0/1:77:47,30:47:1680:30:1076:-73.9735,0,-128.308	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	0/1:4:2,2:2:72:2:68:-5.25342,0,-5.6326	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:50:29,21:29:1028:21:756:-53.3157,0,-77.7815	0/0:198:196,2:196:7024:2:72:0,-52.7672,-625.382	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:72:31,40:31:1116:40:1420:-106.365,0,-79.0187	0/1:81:41,40:41:1472:40:1428:-104.434,0,-108.393	0/1:48:28,20:28:1008:20:716:-50.3183,0,-76.5869	0/1:29:17,12:17:612:12:432:-30.4913,0,-46.6836	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:74:72,2:72:2565:2:72:0,-15.4395,-224.262	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/1:161:85,76:85:3048:76:2736:-198.016,0,-226.083	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:30:30,0:30:1071:0:0:0,-9.0309,-96.7016	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:123:123,0:123:4372:0:0:0,-37.0267,-393.655	0/1:61:43,18:43:1548:18:636:-39.2052,0,-121.25	0/1:83:44,39:44:1567:39:1380:-99.5105,0,-116.335	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:86:48,38:48:1728:38:1368:-97.5322,0,-129.917	0/1:46:30,16:30:1080:16:564:-37.2429,0,-83.6659	0/0:79:78,1:78:2787:1:36:0,-20.1831,-247.472	0/1:158:81,77:81:2900:77:2728:-197.969,0,-213.673	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/0:153:153,0:153:5487:0:0:0,-46.0576,-493.955	0/1:289:130,158:130:4667:158:5610:-418.103,0,-333.282	0/0:57:57,0:57:2043:0:0:0,-17.1587,-184.141	0/1:141:61,80:61:2184:80:2856:-214.833,0,-154.381	0/1:157:82,74:82:2932:74:2647:-191.155,0,-216.794	0/1:114:55,59:55:1964:59:2107:-155.581,0,-142.718	0/1:192:102,90:102:3652:90:3228:-232.938,0,-271.086	0/1:134:33,101:33:1188:101:3577:-281.787,0,-66.8906	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.027	0/0:205:205,0:205:7330:0:0:0,-61.7111,-659.747
chr05	260131	.	C	T	38457.6	PASS	AB=0.49853;ABP=3.07413;AC=43;AF=0.228723;AN=188;AO=1702;CIGAR=1X;DP=7904;DPB=7904;DPRA=0.920311;EPP=3698.86;EPPR=13446.6;GTI=1;LEN=1;MEANALT=1;MQM=59.9377;MQMR=59.9952;NS=94;NUMALT=1;ODDS=0.790828;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60933;QR=221202;RO=6199;RPL=1011;RPP=133.656;RPPR=300.144;RPR=691;RUN=1;SAF=1011;SAP=133.656;SAR=691;SRF=3558;SRP=297.569;SRR=2641;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:31,14:31:1108:14:500:-31.7898,0,-86.4846	0/1:73:32,41:32:1136:41:1456:-109.359,0,-80.5737	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.964	0/1:41:21,20:21:748:20:720:-52.7865,0,-55.3031	0/1:42:17,25:17:612:25:900:-68.6778,0,-42.7702	0/0:36:35,1:35:1252:1:36:0,-7.2388,-109.387	0/0:110:110,0:110:3932:0:0:0,-33.1133,-354.073	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:168:168,0:168:6003:0:0:0,-50.573,-540.376	0/0:185:185,0:185:6587:0:0:0,-55.6905,-592.912	0/1:146:74,72:74:2636:72:2579:-188.409,0,-193.535	0/0:231:231,0:231:8207:0:0:0,-69.5379,-738.644	0/1:157:77,80:77:2737:80:2876:-211.814,0,-199.31	0/0:122:122,0:122:4318:0:0:0,-36.7257,-388.797	0/0:153:153,0:153:5427:0:0:0,-46.0576,-488.562	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:79:79,0:79:2814:0:0:0,-23.7814,-253.499	0/1:63:32,31:32:1135:31:1112:-81.4265,0,-83.4932	0/1:110:43,67:43:1548:67:2397:-182.868,0,-106.5	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	0/0:36:35,0:35:1228:0:0:0,-10.536,-110.462	0/1:35:21,14:21:756:14:496:-34.4244,0,-57.8312	0/0:135:134,0:134:4803:0:0:0,-40.338,-432.036	0/0:98:98,0:98:3489:0:0:0,-29.5009,-314.221	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:85:43,42:43:1544:42:1508:-110.427,0,-113.666	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.146	0/1:76:36,40:36:1292:40:1432:-106.299,0,-93.7055	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:376:376,0:376:13409:0:0:0,-113.187,-1206.6	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/0:127:127,0:127:4540:0:0:0,-38.2308,-408.768	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:82:48,34:48:1715:34:1224:-85.7826,0,-129.95	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:137:137,0:137:4878:0:0:0,-41.2411,-439.174	0/1:162:80,82:80:2841:82:2936:-215.707,0,-207.161	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/0:52:52,0:52:1846:0:0:0,-15.6536,-166.419	0/1:74:43,31:43:1532:31:1108:-77.7514,0,-115.897	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:58:35,23:35:1243:23:824:-57.0236,0,-94.7141	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:81:48,33:48:1709:33:1169:-81.1319,0,-129.71	0/1:28:16,12:16:576:12:413:-29.069,0,-43.7461	0/1:4:2,2:2:72:2:72:-5.63218,0,-5.6326	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:49:28,21:28:1004:21:756:-53.6168,0,-75.9254	0/0:199:197,2:197:7048:2:72:0,-53.0682,-627.543	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:71:30,41:30:1056:41:1461:-110.411,0,-73.975	0/1:85:42,43:42:1504:43:1525:-111.954,0,-110.067	0/1:51:29,22:29:1040:22:783:-55.4404,0,-78.5618	0/1:31:17,14:17:597:14:504:-36.3662,0,-44.7242	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:72:70,2:70:2495:2:68:0,-15.2165,-218.345	0/0:78:78,0:78:2787:0:0:0,-23.4803,-251.07	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:166:86,80:86:3069:80:2855:-207.217,0,-226.466	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/0:60:60,0:60:2138:0:0:0,-18.0618,-192.687	0/0:126:126,0:126:4469:0:0:0,-37.9298,-402.382	0/1:62:43,19:43:1548:19:665:-41.5089,0,-120.949	0/1:81:41,40:41:1453:40:1440:-105.514,0,-106.681	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:90:50,40:50:1781:40:1440:-102.805,0,-133.478	0/1:46:29,17:29:1035:17:612:-41.5661,0,-79.6157	0/0:79:78,1:78:2791:1:36:0,-20.1831,-247.832	0/1:160:81,79:81:2912:79:2830:-206.343,0,-214.15	0/0:130:130,0:130:4647:0:0:0,-39.1339,-418.392	0/0:151:151,0:151:5367:0:0:0,-45.4555,-483.163	0/1:292:133,159:133:4729:159:5708:-425.921,0,-337.867	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/1:139:60,79:60:2147:79:2844:-214.354,0,-151.654	0/1:156:83,73:83:2941:73:2624:-189.446,0,-217.963	0/1:116:56,60:56:1995:60:2152:-159.028,0,-144.904	0/1:195:103,92:103:3678:92:3272:-235.973,0,-272.522	0/1:131:34,97:34:1215:97:3480:-273.974,0,-70.2208	0/0:65:64,0:64:2284:0:0:0,-19.2659,-205.462	0/0:204:204,0:204:7265:0:0:0,-61.4101,-653.903
chr05	260254	.	C	T	118676	PASS	AB=0.489551;ABP=5.77839;AC=145;AF=0.771277;AN=188;AO=5572;CIGAR=1X;DP=7079;DPB=7079;DPRA=0;EPP=12076.4;EPPR=3258.05;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.991;MQMR=59.9774;NS=94;NUMALT=1;ODDS=2.4244;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198275;QR=53095;RO=1503;RPL=1;RPP=12093.8;RPPR=3266.73;RPR=5571;RUN=1;SAF=2;SAP=12085.1;SAR=5570;SRF=1;SRP=3258.05;SRR=1502;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:29,32:29:1021:32:1131:-83.7344,0,-73.8374	0/1:55:30,25:30:1067:25:887:-63.5915,0,-79.7846	1/1:123:0,122:0:0:122:4331:-389.606,-36.7257,0	1/1:162:0,162:0:0:162:5778:-520.135,-48.7669,0	0/1:49:26,23:26:919:23:824:-59.7328,0,-68.2757	0/1:23:11,12:11:373:12:432:-32.2975,0,-26.9716	1/1:94:0,94:0:0:94:3337:-300.548,-28.2968,0	1/1:103:3,100:3:104:100:3557:-310.637,-21.3033,0	1/1:103:0,103:0:0:103:3673:-330.774,-31.0061,0	1/1:55:0,55:0:0:55:1955:-176.225,-16.5567,0	1/1:39:0,39:0:0:39:1393:-125.669,-11.7402,0	1/1:116:0,116:0:0:116:4130:-371.885,-34.9195,0	0/1:72:34,38:34:1207:38:1346:-99.7645,0,-87.2611	1/1:57:0,57:0:0:57:2024:-182.433,-17.1587,0	0/1:67:38,29:38:1335:29:1040:-73.7454,0,-100.28	1/1:54:0,54:0:0:54:1908:-171.996,-16.2556,0	1/1:30:1,29:1:36:29:1022:-88.6926,-5.43263,0	1/1:30:0,30:0:0:30:1054:-95.1692,-9.0309,0	1/1:32:0,32:0:0:32:1121:-101.195,-9.63296,0	0/1:121:65,56:65:2310:56:2003:-144.118,0,-171.735	0/1:74:28,46:28:962:46:1630:-124.711,0,-64.613	0/1:106:77,29:77:2720:29:1044:-62.3656,0,-213.134	0/1:130:76,54:76:2675:54:1910:-133.042,0,-201.861	1/1:67:4,63:4:129:63:2264:-192.095,-8.24135,0	0/1:85:45,40:45:1586:40:1423:-102.779,0,-117.441	1/1:231:1,230:1:36:230:8175:-732.168,-65.9397,0	1/1:182:0,182:0:0:182:6499:-584.995,-54.7875,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:195:116,79:116:4129:79:2820:-195.339,0,-313.094	1/1:67:0,67:0:0:67:2395:-215.806,-20.169,0	0/1:56:24,32:24:851:32:1143:-86.321,0,-60.0518	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:8:6,2:6:207:2:72:-4.42848,0,-16.5587	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:23:13,10:13:460:10:360:-25.8206,0,-34.8117	1/1:230:0,230:0:0:230:8165:-734.87,-69.2369,0	1/1:93:0,93:0:0:93:3311:-298.102,-27.9958,0	1/1:53:0,53:0:0:53:1872:-168.757,-15.9546,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:64:0,64:0:0:64:2287:-206.091,-19.2659,0	0/1:32:18,14:18:644:14:496:-35.3413,0,-48.6576	1/1:88:0,88:0:0:88:3143:-283.095,-26.4906,0	1/1:45:0,45:0:0:45:1596:-143.93,-13.5464,0	0/1:54:25,29:25:870:29:1040:-77.6587,0,-62.3543	0/1:91:32,59:32:1129:59:2116:-163.315,0,-74.5226	1/1:91:0,91:0:0:91:3229:-290.833,-27.3937,0	0/1:113:49,64:49:1747:64:2258:-169.421,0,-123.497	1/1:97:0,97:0:0:97:3423:-308.285,-29.1999,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:189:0,189:0:0:189:6729:-605.687,-56.8947,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:69:0,69:0:0:69:2452:-220.933,-20.7711,0	0/1:74:36,38:36:1279:38:1359:-100.334,0,-93.1362	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:105:39,66:39:1374:66:2331:-178.44,0,-92.349	0/1:41:19,22:19:672:22:775:-57.729,0,-48.4646	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:75:39,36:39:1396:36:1272:-92.2056,0,-103.362	1/1:115:0,115:0:0:115:4074:-366.849,-34.6185,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:98:48,50:48:1695:50:1787:-131.611,0,-123.334	0/1:119:49,68:49:1729:68:2405:-181.146,0,-120.332	0/1:58:32,26:32:1144:26:928:-66.3785,0,-85.8098	0/1:47:20,27:20:707:27:968:-73.289,0,-49.8062	1/1:85:1,84:1:36:84:2975:-264.384,-21.9893,0	1/1:120:1,119:1:36:119:4236:-377.822,-32.5253,0	1/1:62:2,60:2:72:60:2135:-185.581,-11.8271,0	1/1:114:0,114:0:0:114:4087:-368.015,-34.3174,0	0/1:31:16,15:16:552:15:540:-39.6046,0,-40.6709	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:147:0,147:0:0:147:5210:-469.041,-44.2514,0	1/1:87:0,87:0:0:87:3091:-278.418,-26.1896,0	1/1:104:0,104:0:0:104:3677:-331.132,-31.3071,0	0/1:80:35,45:35:1238:45:1612:-121.288,0,-87.6405	0/1:75:38,36:38:1334:36:1284:-93.2275,0,-97.7225	1/1:43:1,42:1:36:42:1504:-132.056,-9.34602,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:43:26,17:26:923:17:608:-42.1077,0,-70.4425	0/1:77:42,35:42:1480:35:1256:-90.166,0,-110.312	1/1:187:0,187:0:0:187:6670:-600.371,-56.2926,0	0/1:70:45,25:45:1608:25:883:-58.7154,0,-123.447	1/1:74:0,74:0:0:74:2634:-237.306,-22.2762,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:139:62,77:62:2206:77:2740:-205,0,-156.961	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:64:28,36:28:959:36:1288:-96.9577,0,-67.3509	0/1:78:40,38:40:1405:38:1356:-98.8601,0,-103.265	0/1:45:22,23:22:775:23:820:-60.5762,0,-56.5248	0/1:91:46,45:46:1626:45:1616:-118.336,0,-119.234	0/1:64:46,18:46:1621:18:626:-37.3974,0,-126.911	1/1:100:1,99:1:27:99:3523:-314.581,-27.4032,0	1/1:112:1,111:1:36:111:3955:-352.544,-30.1171,0
chr05	260263	.	T	C	24911.1	PASS	AB=0.508498;ABP=4.85553;AC=43;AF=0.228723;AN=188;AO=1514;CIGAR=1X;DP=7154;DPB=7154;DPRA=1.00182;EPP=3281.94;EPPR=12237.1;GTI=1;LEN=1;MEANALT=1.01818;MQM=59.9756;MQMR=59.9933;NS=94;NUMALT=1;ODDS=3.58035;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53778;QR=201391;RO=5638;RPL=1;RPP=3281.94;RPPR=12237.1;RPR=1513;RUN=1;SAF=2;SAP=3273.27;SAR=1512;SRF=2;SRP=12228.4;SRR=5636;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:34,27:34:1188:27:959:-68.2626,0,-88.8593	0/1:57:27,30:27:964:30:1071:-79.5429,0,-69.9181	0/0:125:125,0:125:4475:0:0:0,-37.6287,-402.919	0/0:167:167,0:167:5952:0:0:0,-50.272,-535.788	0/1:49:25,24:25:892:24:856:-62.6106,0,-65.8492	0/1:23:13,10:13:460:10:352:-25.0945,0,-34.8117	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:105:103,2:103:3684:2:72:0,-24.7714,-324.926	0/0:103:103,0:103:3680:0:0:0,-31.0061,-331.404	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/0:121:121,0:121:4310:0:0:0,-36.4246,-388.077	0/1:73:39,34:39:1392:34:1216:-87.7714,0,-103.604	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:67:28,39:28:995:39:1395:-105.679,0,-69.695	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:31:30,1:30:1072:1:36:0,-5.73365,-93.1942	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:122:57,65:57:2052:65:2304:-170.893,0,-148.226	0/1:78:48,30:48:1708:30:1072:-73.3121,0,-130.525	0/1:105:28,77:28:1000:77:2724:-213.794,0,-58.7072	0/1:127:53,74:53:1908:74:2599:-195.925,0,-133.767	0/0:67:63,4:63:2252:4:140:0,-7.22443,-189.999	0/1:89:41,48:41:1472:48:1701:-126.582,0,-105.984	0/0:233:232,1:232:8281:1:36:0,-66.5417,-741.7	0/0:183:183,0:183:6544:0:0:0,-55.0885,-589.044	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:197:78,118:78:2772:118:4228:-321.338,0,-190.358	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/1:56:32,24:32:1152:24:860:-60.8642,0,-87.1325	0/1:9:2,7:2:72:7:229:-18.2203,0,-4.12745	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/0:234:234,0:234:8366:0:0:0,-70.441,-752.946	0/0:95:95,0:95:3384:0:0:0,-28.5978,-304.549	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:67:66,0:66:2352:0:0:0,-19.868,-211.58	0/1:32:14,18:14:504:18:635:-47.844,0,-36.0651	0/0:87:86,1:86:3065:1:36:0,-22.5913,-272.48	0/0:46:46,0:46:1627:0:0:0,-13.8474,-146.718	0/1:56:32,24:32:1140:24:849:-59.8706,0,-86.0515	0/1:91:58,33:58:2084:33:1176:-78.754,0,-160.436	0/0:92:92,0:92:3283:0:0:0,-27.6948,-295.688	0/1:114:61,53:61:2180:53:1879:-135.07,0,-162.149	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:192:192,0:192:6869:0:0:0,-57.7978,-618.278	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/1:74:38,36:38:1364:36:1288:-93.9474,0,-100.784	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/1:106:66,40:66:2347:40:1440:-97.9885,0,-179.58	0/1:39:22,17:22:784:17:612:-43.6733,0,-59.1437	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:77:38,39:38:1352:39:1396:-102.76,0,-98.8011	0/0:117:116,1:116:4139:1:36:0,-31.6222,-369.096	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:101:52,49:52:1852:49:1751:-127.469,0,-136.556	0/1:117:68,49:68:2432:49:1756:-123.103,0,-183.915	0/1:59:26,33:26:932:33:1167:-87.5756,0,-66.4381	0/1:48:27,21:27:968:21:743:-52.7439,0,-72.9879	0/0:85:84,1:84:3016:1:36:0,-21.9893,-268.072	0/0:123:122,1:122:4384:1:36:0,-33.4284,-391.133	0/0:64:61,3:61:2192:3:99:0,-10.0293,-188.309	0/0:116:116,0:116:4118:0:0:0,-34.9195,-370.807	0/1:32:16,16:16:572:16:568:-41.8189,0,-42.1805	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:150:150,0:150:5353:0:0:0,-45.1545,-481.903	0/0:87:87,0:87:3088:0:0:0,-26.1896,-278.15	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.621	0/1:80:45,35:45:1608:35:1256:-89.2629,0,-120.928	0/1:74:36,38:36:1288:38:1307:-95.6472,0,-93.9474	0/0:44:43,1:43:1536:1:36:0,-9.64704,-134.935	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:43:17,26:17:595:26:927:-70.8031,0,-40.9324	0/1:76:36,40:36:1288:40:1421:-105.307,0,-93.3453	0/0:187:186,1:186:6605:1:36:0,-52.6943,-590.924	0/1:74:27,47:27:968:47:1645:-125.987,0,-65.1611	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.999	0/0:48:48,0:48:1699:0:0:0,-14.4494,-153.195	0/1:140:77,63:77:2764:63:2248:-160.439,0,-206.857	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:65:36,29:36:1280:29:1027:-73.1752,0,-95.9363	0/1:78:38,40:38:1364:40:1428:-105.337,0,-99.5804	0/1:44:23,21:23:819:21:748:-54.4,0,-60.7862	0/1:91:45,46:45:1588:46:1619:-118.604,0,-115.814	0/1:67:19,48:19:680:48:1695:-132.666,0,-41.3602	0/0:104:103,1:103:3692:1:36:0,-27.7088,-328.884	0/0:109:109,0:109:3896:0:0:0,-32.8123,-350.835
chr05	260655	.	T	C	187961	PASS	AB=0.570374;ABP=189.444;AC=142;AF=0.763441;AN=186;AO=8737;CIGAR=1X;DP=10615;DPB=10615;DPRA=0;EPP=18975.2;EPPR=4070.18;GTI=4;LEN=1;MEANALT=1.05376;MQM=59.9816;MQMR=59.9979;NS=93;NUMALT=1;ODDS=5.8268;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312154;QR=66874;RO=1873;RPL=0;RPP=18975.2;RPPR=4070.18;RPR=8737;RUN=1;SAF=8737;SAP=18975.2;SAR=0;SRF=1873;SRP=4070.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:19,16:19:684:16:572:-41.2774,0,-51.3543	0/1:151:44,107:44:1568:107:3789:-295.754,0,-95.9561	1/1:124:0,124:0:0:124:4420:-397.967,-37.3277,0	1/1:221:0,221:0:0:221:7916:-712.464,-66.5276,0	0/1:92:48,43:48:1720:43:1525:-109.159,0,-127.332	0/1:62:27,34:27:964:34:1216:-91.024,0,-68.3543	1/1:148:0,148:0:0:148:5292:-476.416,-44.5524,0	1/1:265:0,265:0:0:265:9470:-852.261,-79.773,0	1/1:143:2,141:2:72:141:5009:-444.106,-36.2106,0	1/1:221:0,221:0:0:221:7909:-711.834,-66.5276,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:74:0,74:0:0:74:2635:-237.397,-22.2762,0	0/1:62:34,28:34:1220:28:1000:-71.651,0,-91.4429	1/1:64:0,64:0:0:64:2278:-205.281,-19.2659,0	0/1:62:23,39:23:820:39:1404:-107.995,0,-55.4587	1/1:73:0,73:0:0:73:2614:-235.508,-21.9752,0	1/1:89:0,89:0:0:89:3183:-286.693,-26.7917,0	1/1:83:1,82:1:36:82:2932:-260.516,-21.3872,0	1/1:58:0,58:0:0:58:2052:-184.949,-17.4597,0	0/1:201:94,107:94:3338:107:3824:-283.763,0,-240.129	0/1:108:55,53:55:1953:53:1900:-138.767,0,-143.533	0/1:67:36,31:36:1296:31:1112:-80.2223,0,-96.7749	0/1:58:18,40:18:644:40:1421:-110.726,0,-40.8309	0/1:85:8,77:8:288:77:2745:-221.704,0,-0.679857	0/1:85:42,43:42:1481:43:1526:-112.045,0,-107.995	1/1:468:0,468:0:0:468:16727:-1504.96,-140.882,0	1/1:216:0,216:0:0:216:7722:-695.01,-65.0225,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:269:133,136:133:4776:136:4830:-353.877,0,-349.018	1/1:111:4,107:4:140:107:3828:-331.772,-20.4698,0	0/1:99:23,76:23:813:76:2720:-215.241,0,-43.6871	0/1:8:5,3:5:172:3:104:-7.29457,0,-13.4097	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:15:2,13:2:72:13:468:-37.9442,0,-2.32127	1/1:213:1,212:1:36:212:7613:-681.605,-60.5211,0	1/1:200:0,200:0:0:200:7121:-640.947,-60.206,0	1/1:54:0,54:0:0:54:1931:-174.066,-16.2556,0	.:.:.:.:.:.:.:.	1/1:120:0,120:0:0:120:4316:-388.614,-36.1236,0	0/1:32:17,15:17:612:15:531:-38.4889,0,-45.7805	1/1:167:0,167:0:0:167:5969:-537.316,-50.272,0	1/1:92:0,92:0:0:92:3308:-297.937,-27.6948,0	0/1:64:35,29:35:1256:29:1044:-75.0089,0,-94.0794	0/1:117:53,64:53:1885:64:2288:-170.961,0,-134.706	1/1:173:0,173:0:0:173:6169:-555.308,-52.0782,0	0/1:280:118,162:118:4236:162:5781:-436.116,0,-297.13	1/1:142:0,141:0:0:141:5050:-454.285,-42.4452,0	1/1:287:0,287:0:0:287:10260:-923.329,-86.3956,0	1/1:208:0,208:0:0:208:7389:-665.061,-62.6142,0	0/1:13:2,11:2:68:11:396:-32.0694,0,-2.54432	1/1:124:0,124:0:0:124:4443:-400.041,-37.3277,0	0/1:34:15,19:15:536:19:684:-51.6553,0,-38.3398	0/1:29:13,16:13:464:16:576:-43.4451,0,-33.3676	0/1:181:66,115:66:2340:115:4128:-317.217,0,-156.374	0/1:46:16,30:16:572:30:1076:-83.3055,0,-37.966	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:128:48,80:48:1716:80:2848:-218.027,0,-116.194	1/1:77:0,77:0:0:77:2760:-248.641,-23.1793,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:236:110,126:110:3913:126:4491:-333.316,0,-281.321	0/1:270:71,199:71:2547:199:7120:-559.581,0,-148.202	0/1:114:39,75:39:1389:75:2671:-206.319,0,-90.9895	0/1:137:58,79:58:2046:79:2820:-212.799,0,-143.167	1/1:200:0,200:0:0:200:7156:-644.052,-60.206,0	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:106:0,106:0:0:106:3804:-342.557,-31.9092,0	0/1:104:59,45:59:2105:45:1600:-112.982,0,-158.41	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:81:0,81:0:0:81:2891:-260.425,-24.3834,0	1/1:98:0,98:0:0:98:3508:-315.93,-29.5009,0	1/1:197:0,197:0:0:197:7007:-630.688,-59.3029,0	0/1:147:71,76:71:2522:76:2709:-199.801,0,-182.977	0/1:97:37,59:37:1324:59:2100:-160.009,0,-90.2034	1/1:173:3,170:3:108:170:6041:-533.721,-42.003,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:162:66,96:66:2368:96:3448:-261.765,0,-164.611	0/1:117:64,52:64:2262:52:1872:-133.48,0,-168.561	1/1:341:3,338:3:108:338:12054:-1074.64,-92.5761,0	0/1:90:48,42:48:1720:42:1499:-108.111,0,-127.993	1/1:67:0,67:0:0:67:2391:-215.447,-20.169,0	1/1:102:0,102:0:0:102:3644:-328.165,-30.7051,0	0/1:151:66,85:66:2368:85:3044:-228.734,0,-167.922	1/1:40:1,39:1:36:39:1400:-122.701,-8.44293,0	0/1:82:38,44:38:1352:44:1563:-116.276,0,-97.2959	0/1:51:30,21:30:1080:21:741:-51.6591,0,-82.1607	0/1:42:22,20:22:788:20:716:-52.1245,0,-58.6015	0/1:71:38,33:38:1368:33:1180:-85.1349,0,-102.048	0/1:63:39,24:39:1404:24:860:-58.7569,0,-107.694	1/1:165:0,165:0:0:165:5901:-531.199,-49.67,0	1/1:150:0,150:0:0:150:5375:-483.88,-45.1545,0
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chr05	293201	.	G	A	42246.4	PASS	AB=0.493362;ABP=4.94169;AC=42;AF=0.225806;AN=186;AO=2508;CIGAR=1X;DP=11095;DPB=11095;DPRA=1.14152;EPP=5353.94;EPPR=18413.4;GTI=1;LEN=1;MEANALT=1.02041;MQM=59.947;MQMR=59.9991;NS=93;NUMALT=1;ODDS=2.22076;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89286;QR=306861;RO=8582;RPL=10;RPP=5362.55;RPPR=18422.1;RPR=2498;RUN=1;SAF=2507;SAP=5440.38;SAR=1;SRF=8581;SRP=18629.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:34,47:34:1212:47:1668:-126.024,0,-85.0029	0/1:97:61,36:61:2188:36:1288:-87.0237,0,-167.986	0/0:176:176,0:176:6301:0:0:0,-52.9813,-567.181	0/0:361:360,0:360:12893:0:0:0,-108.371,-1159.82	0/1:101:51,50:51:1832:50:1778:-129.898,0,-134.757	0/1:81:36,45:36:1292:45:1607:-120.537,0,-92.2003	0/0:157:157,0:157:5607:0:0:0,-47.2617,-504.753	0/0:116:116,0:116:4153:0:0:0,-34.9195,-373.951	0/0:281:278,3:278:9919:3:104:0,-74.8866,-882.949	0/0:103:103,0:103:3641:0:0:0,-31.0061,-327.894	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:133:133,0:133:4768:0:0:0,-40.037,-429.277	0/1:90:50,40:50:1796:40:1440:-102.805,0,-134.83	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.55	0/1:85:48,37:48:1724:37:1328:-94.2347,0,-129.858	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:44:43,1:43:1548:1:36:0,-9.64704,-136.015	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:254:128,126:128:4557:126:4515:-330.056,0,-333.835	0/1:253:122,131:122:4358:131:4649:-342.392,0,-316.233	0/1:108:40,68:40:1436:68:2390:-182.844,0,-97.0264	0/1:218:118,100:118:4213:100:3584:-256.516,0,-313.725	0/1:165:147,18:147:5255:18:640:-8.25937,0,-423.417	0/1:133:76,57:76:2724:57:2002:-140.413,0,-205.366	0/0:326:326,0:326:11661:0:0:0,-98.1358,-1049.36	0/0:204:204,0:204:7317:0:0:0,-61.4101,-658.576	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:357:185,172:185:6587:172:6111:-442.625,0,-485.442	0/0:133:123,10:123:4400:10:356:0,-7.65574,-363.792	0/1:158:73,85:73:2597:85:3032:-225.548,0,-186.415	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	.:.:.:.:.:.:.:.	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:182:182,0:182:6536:0:0:0,-54.7875,-588.319	0/0:151:151,0:151:5355:0:0:0,-45.4555,-482.088	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605	0/1:20:10,10:10:345:10:356:-26.3606,0,-25.3602	0/0:167:166,0:166:5943:0:0:0,-49.971,-534.613	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:87:37,50:37:1328:50:1788:-135.013,0,-93.6326	0/1:182:119,63:119:4276:63:2221:-144.938,0,-330.229	0/0:165:164,1:164:5876:1:36:0,-46.0717,-525.352	0/1:249:125,124:125:4457:124:4423:-323.287,0,-326.344	0/0:117:117,0:117:4177:0:0:0,-35.2205,-376.111	0/0:165:165,0:165:5902:0:0:0,-49.6699,-531.286	0/0:147:146,1:146:5222:1:36:0,-40.6531,-466.519	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:119:119,0:119:4253:0:0:0,-35.8226,-382.948	0/1:46:19,27:19:676:27:968:-73.59,0,-47.3206	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:162:70,91:70:2508:91:3230:-242.098,0,-177.147	0/1:112:48,64:48:1716:64:2272:-170.99,0,-121.01	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:139:78,61:78:2796:61:2153:-152.193,0,-210.037	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:217:103,114:103:3700:114:4080:-302.063,0,-267.877	0/1:251:124,127:124:4440:127:4525:-331.859,0,-324.212	0/1:77:31,46:31:1112:46:1636:-124.349,0,-77.212	0/1:91:45,46:45:1599:46:1620:-118.695,0,-116.806	0/0:241:240,1:240:8591:1:36:0,-68.95,-769.585	0/0:182:182,0:182:6475:0:0:0,-54.7875,-582.838	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:125:123,0:123:4400:0:0:0,-37.0267,-395.813	0/1:34:14,20:14:504:20:720:-54.8938,0,-35.4631	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:159:159,0:159:5677:0:0:0,-47.8638,-511.049	0/0:161:161,0:161:5759:0:0:0,-48.4658,-518.425	0/0:257:257,0:257:9185:0:0:0,-77.3647,-826.622	0/1:216:90,126:90:3217:126:4473:-337.717,0,-224.728	0/1:123:52,71:52:1848:71:2525:-190.474,0,-129.573	0/0:152:151,1:151:5389:1:36:0,-42.1583,-481.543	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:155:86,69:86:3077:69:2465:-175.443,0,-230.497	0/1:155:67,88:67:2388:88:3114:-233.826,0,-168.515	0/0:272:272,0:272:9711:0:0:0,-81.8802,-873.94	0/1:67:30,37:30:1080:37:1309:-97.9338,0,-77.3442	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:145:82,63:82:2944:63:2240:-158.214,0,-221.544	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3671	0/1:59:36,23:36:1283:23:824:-56.7225,0,-98.0119	0/1:75:40,35:40:1432:35:1260:-91.1282,0,-106.6	0/1:30:18,12:18:635:12:428:-29.8279,0,-48.4461	0/1:66:21,45:21:756:45:1608:-125.142,0,-48.4992	0/1:77:30,47:30:1080:47:1692:-129.388,0,-74.3339	0/0:224:224,0:224:8007:0:0:0,-67.4307,-720.652	0/0:140:140,0:140:5012:0:0:0,-42.1442,-451.227
chr05	293212	.	T	A	42523.5	PASS	AB=0.49611;ABP=3.66915;AC=42;AF=0.225806;AN=186;AO=2504;CIGAR=1X;DP=10987;DPB=10987;DPRA=1.13416;EPP=5388.39;EPPR=18261.1;GTI=1;LEN=1;MEANALT=1.02083;MQM=59.9669;MQMR=59.9998;NS=93;NUMALT=1;ODDS=1.56307;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89606;QR=302477;RO=8480;RPL=2498;RPP=5388.39;RPPR=18252.4;RPR=6;RUN=1;SAF=2502;SAP=5423.02;SAR=2;SRF=8479;SRP=18408.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:82:34,48:34:1207:48:1713:-129.77,0,-84.2508	0/1:94:58,36:58:2080:36:1296:-88.6471,0,-159.173	0/0:176:176,0:176:6287:0:0:0,-52.9813,-565.924	0/0:360:360,0:360:12804:0:0:0,-108.371,-1152.19	0/1:102:51,51:51:1824:51:1821:-133.465,0,-133.736	0/1:80:36,44:36:1296:44:1584:-118.769,0,-92.8615	0/0:156:156,0:156:5538:0:0:0,-46.9607,-498.547	0/0:117:117,0:117:4183:0:0:0,-35.2205,-376.652	0/0:275:272,3:272:9680:3:104:0,-73.0804,-861.454	0/0:102:102,0:102:3640:0:0:0,-30.7051,-327.806	0/0:46:46,0:46:1618:0:0:0,-13.8474,-145.908	0/0:131:131,0:131:4648:0:0:0,-39.4349,-418.484	0/1:91:51,40:51:1802:40:1436:-102.144,0,-135.067	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:84:47,37:47:1688:37:1323:-94.0848,0,-126.92	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/0:44:43,1:43:1540:1:36:0,-9.64704,-135.295	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:249:123,126:123:4391:126:4519:-331.92,0,-320.407	0/1:256:122,134:122:4376:134:4793:-354.439,0,-316.949	0/1:107:40,67:40:1436:67:2408:-184.766,0,-97.3275	0/1:213:115,97:115:4109:97:3476:-248.873,0,-305.816	0/1:163:146,17:146:5223:17:612:-6.34555,0,-421.14	0/1:131:74,57:74:2652:57:2045:-144.887,0,-199.491	0/0:323:322,0:322:11538:0:0:0,-96.9317,-1037.93	0/0:204:204,0:204:7274:0:0:0,-61.4101,-654.715	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:355:185,170:185:6620:170:6061:-438.724,0,-489.014	0/0:132:122,10:122:4351:10:356:0,-7.35471,-359.385	0/1:164:75,89:75:2680:89:3179:-236.964,0,-192.076	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	.:.:.:.:.:.:.:.	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:182:182,0:182:6510:0:0:0,-54.7875,-585.982	0/0:150:150,0:150:5306:0:0:0,-45.1545,-477.678	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:82:82,0:82:2912:0:0:0,-24.6845,-262.314	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/0:161:161,0:161:5752:0:0:0,-48.4658,-517.797	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.887	0/1:89:37,52:37:1324:52:1856:-140.528,0,-92.6704	0/1:188:122,66:122:4360:66:2361:-156.097,0,-335.982	0/0:161:160,1:160:5731:1:36:0,-44.8676,-512.307	0/1:248:122,126:122:4362:126:4497:-330.242,0,-318.098	0/0:116:116,0:116:4144:0:0:0,-34.9195,-373.142	0/0:163:163,0:163:5843:0:0:0,-49.0679,-525.98	0/0:142:142,0:142:5080:0:0:0,-42.7463,-457.345	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:116:116,0:116:4133:0:0:0,-34.9195,-372.154	0/1:47:20,27:20:707:27:964:-72.9284,0,-49.8062	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:163:72,91:72:2580:91:3252:-243.833,0,-183.381	0/1:109:47,62:47:1675:62:2228:-167.857,0,-118.224	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:139:77,62:77:2729:62:2214:-157.681,0,-204.009	0/0:111:111,0:111:3924:0:0:0,-33.4143,-353.352	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:212:99,113:99:3527:113:4056:-301.408,0,-253.822	0/1:248:122,126:122:4363:126:4508:-331.23,0,-318.189	0/1:78:33,45:33:1180:45:1605:-121.259,0,-83.0277	0/1:87:41,46:41:1448:46:1652:-122.779,0,-104.424	0/0:240:239,1:239:8503:1:36:0,-68.6489,-761.676	0/0:182:182,0:182:6481:0:0:0,-54.7875,-583.378	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:123:123,0:123:4390:0:0:0,-37.0267,-395.273	0/1:33:14,19:14:504:19:684:-51.9563,0,-35.7641	0/0:37:37,0:37:1301:0:0:0,-11.1381,-117.389	0/0:150:150,0:150:5330:0:0:0,-45.1545,-479.837	0/0:161:161,0:161:5730:0:0:0,-48.4658,-515.82	0/0:250:250,0:250:8929:0:0:0,-75.2575,-803.593	0/1:215:90,125:90:3220:125:4487:-339.276,0,-225.301	0/1:120:51,69:51:1818:69:2476:-186.97,0,-127.776	0/0:150:149,1:149:5318:1:36:0,-41.5562,-475.156	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:152:83,69:83:2967:69:2470:-176.796,0,-221.506	0/1:153:67,86:67:2387:86:3070:-230.469,0,-169.03	0/0:267:267,0:267:9553:0:0:0,-80.375,-859.725	0/1:65:30,35:30:1065:35:1251:-93.3273,0,-76.5928	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:58:57,0:57:2016:0:0:0,-17.1587,-181.351	0/1:145:81,64:81:2885:64:2257:-159.74,0,-216.236	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/1:57:35,22:35:1223:22:792:-54.447,0,-93.2114	0/1:74:38,36:38:1364:36:1284:-93.5872,0,-100.784	0/1:27:15,12:15:525:12:428:-30.731,0,-39.4502	0/1:66:21,45:21:723:45:1616:-125.862,0,-45.5178	0/1:76:29,47:29:1035:47:1688:-129.329,0,-70.5848	0/0:220:220,0:220:7818:0:0:0,-66.2266,-703.653	0/0:139:139,0:139:4948:0:0:0,-41.8432,-445.468
chr05	296921	.	C	T	14578.8	PASS	AB=0.504055;ABP=3.59146;AC=42;AF=0.225806;AN=186;AO=2065;CIGAR=1X;DP=8808;DPB=8808;DPRA=0.985638;EPP=4487.1;EPPR=14196.9;GTI=0;LEN=1;MEANALT=1.06122;MQM=25.3429;MQMR=27.0717;NS=93;NUMALT=1;ODDS=1.77208;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72978;QR=237770;RO=6739;RPL=2065;RPP=4487.1;RPPR=14214;RPR=0;RUN=1;SAF=2065;SAP=4487.1;SAR=0;SRF=6737;SRP=14619.2;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:12,15:12:419:15:528:-26.3446,0,-20.4541	0/1:95:48,47:48:1666:47:1676:-79.1888,0,-84.3624	0/0:112:112,0:112:3952:0:0:0,-33.7154,-263.563	0/0:257:257,0:257:9056:0:0:0,-77.3647,-606.489	0/1:108:54,54:54:1907:54:1910:-86.342,0,-98.5109	0/1:56:30,26:30:1063:26:936:-43.2719,0,-54.8217	0/0:99:99,0:99:3552:0:0:0,-29.802,-236.306	0/0:120:120,0:120:4266:0:0:0,-36.1236,-284.59	0/0:84:84,0:84:2969:0:0:0,-25.2865,-201.858	0/0:106:106,0:106:3745:0:0:0,-31.9092,-249.885	0/0:45:45,0:45:1592:0:0:0,-13.5463,-106.171	0/0:83:83,0:83:2911:0:0:0,-24.9855,-196.656	0/1:78:39,39:39:1367:39:1369:-64.995,0,-67.1436	0/0:54:54,0:54:1884:0:0:0,-16.2556,-126.07	0/1:74:34,40:34:1188:40:1432:-66.5281,0,-58.0447	0/0:60:58,1:58:2041:1:36:0,-15.5316,-133.344	0/0:52:52,0:52:1817:0:0:0,-15.6536,-122.61	0/0:54:54,0:54:1931:0:0:0,-16.2556,-128.21	0/0:53:53,0:53:1832:0:0:0,-15.9546,-124.04	0/1:240:107,133:107:3800:133:4728:-221.701,0,-181.955	0/1:140:77,63:77:2708:63:2172:-96.1008,0,-139.852	0/1:114:38,76:38:1360:76:2672:-138.586,0,-59.7529	0/1:83:46,37:46:1627:37:1312:-56.9939,0,-84.1875	0/0:98:93,5:93:3262:5:180:0,-18.0687,-207.658	0/1:78:41,37:41:1447:37:1311:-58.6292,0,-73.1817	0/0:298:298,0:298:10559:0:0:0,-89.7069,-708.133	0/0:167:167,0:167:5955:0:0:0,-50.272,-397.602	0/0:45:45,0:45:1586:0:0:0,-13.5463,-105.975	0/1:288:159,129:159:5631:129:4615:-208.718,0,-290.154	0/0:101:100,1:100:3541:1:36:0,-27.9371,-232.971	0/1:87:33,54:33:1172:54:1919:-94.3414,0,-52.4236	0/1:5:2,3:2:72:3:108:-5.40219,0,-3.52719	0/0:7:7,0:7:248:0:0:0,-2.10721,-16.723	0/1:4:1,3:1:36:3:99:-5.76227,0,-1.44448	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.6486	0/1:15:2,13:2:72:13:468:-25.6773,0,-0.51689	0/0:245:245,0:245:8657:0:0:0,-73.7523,-578.465	0/0:177:177,0:177:6251:0:0:0,-53.2823,-419.752	0/0:64:64,0:64:2269:0:0:0,-19.2659,-152.374	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.79328	0/0:199:198,0:198:6978:0:0:0,-59.6039,-466.083	0/1:17:9,8:9:320:8:284:-12.8492,0,-16.5393	0/0:138:138,0:138:4847:0:0:0,-41.5421,-328.19	0/0:83:83,0:83:2941:0:0:0,-24.9855,-196.806	0/1:66:41,25:41:1446:25:864:-35.024,0,-77.2462	0/1:107:50,57:50:1745:57:2012:-97.7829,0,-85.4566	0/0:90:90,0:90:3186:0:0:0,-27.0927,-213.616	0/1:226:105,120:105:3618:120:4250:-198.795,0,-176.614	0/0:104:103,1:103:3644:1:36:0,-28.8402,-241.337	0/0:86:86,0:86:3078:0:0:0,-25.8886,-203.401	0/0:140:140,0:140:4990:0:0:0,-42.1442,-331.195	.:.:.:.:.:.:.:.	0/0:89:89,0:89:3143:0:0:0,-26.7917,-211.492	0/1:83:39,44:39:1392:44:1536:-75.5126,0,-68.0705	0/1:4:3,1:3:104:1:36:-1.35459,0,-6.21761	0/1:128:59,69:59:2086:69:2383:-112.711,0,-100.026	0/1:53:18,35:18:644:35:1243:-61.8071,0,-26.9103	0/1:4:2,2:2:72:2:72:-3.65742,0,-3.82822	0/0:10:10,0:10:345:0:0:0,-3.0103,-22.9327	0/1:60:35,25:35:1252:25:872:-37.3726,0,-65.5117	0/0:121:121,0:121:4249:0:0:0,-36.4246,-284.294	0/0:5:5,0:5:180:0:0:0,-1.50515,-12.1836	0/1:248:116,132:116:4054:132:4700:-228.397,0,-197.585	0/1:138:79,59:79:2804:59:2077:-88.9233,0,-145.252	0/1:48:25,23:25:887:23:815:-36.7422,0,-45.806	0/1:75:43,32:43:1532:32:1144:-48.6338,0,-80.6287	0/0:113:110,3:110:3867:3:104:0,-27.1517,-253.063	0/0:88:88,0:88:3105:0:0:0,-26.4906,-206.334	0/0:14:13,1:13:426:1:32:0,-1.87808,-27.5614	0/0:27:27,0:27:968:0:0:0,-8.12781,-64.4813	0/1:76:42,34:42:1499:34:1192:-55.5974,0,-77.0488	0/0:12:12,0:12:428:0:0:0,-3.61236,-28.8082	0/0:78:78,0:78:2763:0:0:0,-23.4803,-184.698	0/0:50:48,2:48:1715:2:72:0,-10.19,-108.877	0/0:121:121,0:121:4243:0:0:0,-36.4246,-284.491	0/1:229:109,119:109:3846:119:4218:-193.407,0,-188.605	0/1:86:42,44:42:1485:44:1567:-74.8265,0,-78.7663	0/0:85:85,0:85:2996:0:0:0,-25.5875,-200.429	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.41608	0/1:117:65,52:65:2297:52:1850:-80.1387,0,-119.064	0/1:131:69,62:69:2432:62:2191:-102.297,0,-123.605	0/0:240:240,0:240:8477:0:0:0,-72.2472,-566.008	0/1:120:68,52:68:2327:52:1840:-78.3964,0,-121.236	0/0:61:61,0:61:2139:0:0:0,-18.3628,-144.094	0/0:98:98,0:98:3421:0:0:0,-29.5009,-229.485	0/1:202:108,94:108:3806:94:3299:-147,0,-193.628	0/0:58:58,0:58:2057:0:0:0,-17.4597,-137.023	0/1:77:34,43:34:1203:43:1496:-75.0491,0,-57.2281	0/1:92:51,41:51:1798:41:1451:-66.0785,0,-93.3092	0/1:18:14,4:14:492:4:144:-3.70901,0,-28.0344	0/1:77:37,40:37:1300:40:1397:-65.2269,0,-63.8525	0/1:95:30,65:30:1067:65:2294:-115.107,0,-42.4835	0/0:134:134,0:134:4705:0:0:0,-40.338,-313.517	0/0:109:109,0:109:3780:0:0:0,-32.8123,-255.637
chr05	301645	.	GTCAAA	ATCAAA,ATCTAG	347790	PASS	AB=0.64559,0.350446;ABP=931.841,983.113;AC=156,32;AF=0.829787,0.170213;AN=188;AO=14947,1786;CIGAR=1X5M,1X2M1X1M1X;DP=16814;DPB=16816.5;DPRA=0,1.1666;EPP=32442.6,3881.26;EPPR=48.6112;GTI=4;LEN=1,6;MEANALT=1.98936,2.7561;MQM=36.099,29.3942;MQMR=46.2857;NS=94;NUMALT=2;ODDS=2.37339;PAIRED=0,0;PAIREDR=0;PAO=8,8;PQA=281.5,281.5;PQR=0;PRO=0;QA=451226,62870;QR=721;RO=21;RPL=6454,1786;RPP=607.007,3881.26;RPPR=3.94093;RPR=8493,0;RUN=1,1;SAF=6452,1786;SAP=609.379,3881.26;SAR=8495,0;SRF=9;SRP=3.94093;SRR=12;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,56,0:0:0:56,0:1783,0:-154.328,-16.8577,0,-154.328,-16.8577,-154.328	1/1:143:0,143,0:0:0:143,0:4232,0:-356.933,-43.0473,0,-356.933,-43.0473,-356.933	1/1:390:0,390,0:0:0:390,0:12318,0:-1061.5,-117.402,0,-1061.5,-117.402,-1061.5	1/1:444:0,441,1:0:0:441,1:13724,36:-1170.16,-132.754,0,-1167.92,-130.489,-1167.62	1/2:179:0,131,48:0:0:131,48:4030,1710:-415.823,-110.799,-71.3643,-305.314,0,-290.865	1/1:26:0,26,0:0:0:26,0:771,0:-65.2846,-7.82678,0,-65.2846,-7.82678,-65.2846	1/1:259:0,258,0:0:0:258,0:7692,0:-644.93,-77.6657,0,-644.93,-77.6657,-644.93	1/1:364:0,364,0:0:0:364,0:10431,0:-870.995,-109.575,0,-870.995,-109.575,-870.995	1/1:213:0,211,0:0:0:211,0:6071,0:-506.598,-63.5173,0,-506.598,-63.5173,-506.598	1/1:219:1,217,0:1:35:217,0:6527,0:-545.849,-62.6063,0,-546.15,-65.3235,-548.809	1/1:165:0,164,0:0:0:164,0:5134,0:-438.647,-49.3689,0,-438.647,-49.3689,-438.647	1/1:169:0,168,0:0:0:168,0:5214,0:-446.502,-50.573,0,-446.502,-50.573,-446.502	1/1:77:0,76,0:0:0:76,0:2316,0:-197.901,-22.8783,0,-197.901,-22.8783,-197.901	1/1:129:0,129,0:0:0:129,0:3998,0:-343.894,-38.8329,0,-343.894,-38.8329,-343.894	1/2:98:0,61,37:0:0:61,37:1910,1310:-229.109,-83.5211,-65.1582,-145.877,0,-134.739	1/1:112:0,112,0:0:0:112,0:3431,0:-293.103,-33.7154,0,-293.103,-33.7154,-293.103	1/1:128:0,127,0:0:0:127,0:3461,0:-284.101,-38.2308,0,-284.101,-38.2308,-284.101	1/1:80:0,80,0:0:0:80,0:2300,0:-192.273,-24.0824,0,-192.273,-24.0824,-192.273	1/1:81:0,81,0:0:0:81,0:2535,0:-217.544,-24.3834,0,-217.544,-24.3834,-217.544	1/2:389:0,253,136:0:0:253,136:8072,4763:-921.489,-303.175,-227.014,-618.604,0,-577.664	1/2:226:0,159,67:0:0:159,67:4638,2375:-496.609,-154.927,-107.063,-341.967,0,-321.798	1/2:215:0,110,104:0:0:110,104:3283,3653:-470.721,-230.612,-197.499,-240.104,0,-208.797	1/2:113:0,77,35:0:0:77,35:2412,1212:-260.002,-77.5572,-54.3778,-182.401,0,-171.865	1/1:234:0,233,1:0:0:233,1:6210,35:-504.642,-70.14,0,-502.35,-67.5602,-502.049	1/2:124:0,79,45:0:0:79,45:2391,1590:-283.704,-103.566,-79.7851,-180.425,0,-166.879	1/1:665:0,660,2:0:0:660,2:20094,72:-1688.11,-198.68,0,-1683.56,-194.1,-1682.96	1/1:406:0,405,0:0:0:405,0:12542,0:-1075.51,-121.917,0,-1075.51,-121.917,-1075.51	1/1:70:1,69,0:1:33:69,0:2049,0:-170.769,-17.773,0,-171.07,-20.7711,-173.738	1/2:403:1,258,143:1:36:258,143:8072,5028:-922.136,-314.797,-239.293,-605.491,0,-564.605	1/1:261:5,246,8:5:163:246,8:7358,281:-609.776,-61.4461,0,-592.827,-55.5976,-603.014	1/2:127:0,96,30:0:0:96,30:2833,1059:-274.321,-66.9767,-38.0778,-207.368,0,-198.337	1/2:13:0,8,5:0:0:8,5:266,180:-32.7444,-11.8476,-9.43933,-21.1999,0,-19.6947	1/1:43:0,43,0:0:0:43,0:1320,0:-113.161,-12.9443,0,-113.161,-12.9443,-113.161	1/1:4:0,4,0:0:0:4,0:129,0:-11.5808,-1.20412,0,-11.5808,-1.20412,-11.5808	1/1:15:0,15,0:0:0:15,0:492,0:-43.2135,-4.51545,0,-43.2135,-4.51545,-43.2135	1/1:15:0,15,0:0:0:15,0:522,0:-46.929,-4.51545,0,-46.929,-4.51545,-46.929	1/1:394:0,392,0:0:0:392,0:12284,0:-1045.75,-118.004,0,-1045.75,-118.004,-1045.75	1/1:319:0,319,0:0:0:319,0:9157,0:-764.436,-96.0286,0,-764.436,-96.0286,-764.436	1/1:146:1,145,0:1:34:145,0:4261,0:-356.219,-40.5515,0,-356.52,-43.6494,-359.278	1/1:7:0,7,0:0:0:7,0:226,0:-19.804,-2.10721,0,-19.804,-2.10721,-19.804	1/1:287:0,287,0:0:0:287,0:8583,0:-727.879,-86.3956,0,-727.879,-86.3956,-727.879	1/2:51:0,33,18:0:0:33,18:958,630:-111.51,-41.4477,-31.5137,-70.3435,0,-64.925	1/1:340:0,336,1:0:0:336,1:9928,36:-838.389,-101.146,0,-836.078,-98.8293,-835.777	1/1:146:0,145,0:0:0:145,0:4287,0:-358.556,-43.6494,0,-358.556,-43.6494,-358.556	1/2:83:0,54,28:0:0:54,28:1557,981:-175.068,-61.9865,-45.7309,-113.093,0,-104.664	1/2:159:0,102,57:0:0:102,57:3270,2015:-376.154,-126.83,-96.1245,-249.614,0,-232.455	1/1:256:2,253,0:2:69:253,0:7401,0:-615.271,-70.5239,0,-615.873,-76.1606,-621.48	1/2:303:0,170,133:0:0:170,133:5201,4653:-685.115,-295.684,-244.509,-389.715,0,-349.678	1/1:180:0,180,0:0:0:180,0:5421,0:-456.647,-54.1854,0,-456.647,-54.1854,-456.647	1/1:284:1,282,0:1:32:282,0:8429,0:-703.33,-82.3848,0,-703.631,-84.8905,-706.102	1/1:314:3,311,0:3:104:311,0:9704,0:-813.671,-84.8607,0,-814.574,-93.6203,-823.028	1/2:14:0,11,3:0:0:11,3:342,105:-32.7367,-6.94127,-3.62994,-26.0785,0,-25.1754	1/1:318:0,315,0:0:0:315,0:9328,0:-787.708,-94.8245,0,-787.708,-94.8245,-787.708	1/2:89:0,28,61:0:0:28,61:923,2145:-207.168,-135.615,-127.187,-71.8002,0,-53.4374	1/1:24:0,24,0:0:0:24,0:655,0:-53.9132,-7.22472,0,-53.9132,-7.22472,-53.9132	1/2:253:0,146,105:0:0:146,105: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chr05	319111	.	G	A	151607	PASS	AB=0.510052;ABP=6.41526;AC=144;AF=0.774194;AN=186;AO=6988;CIGAR=1X;DP=8914;DPB=8914;DPRA=0;EPP=14857.6;EPPR=4066.6;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9367;MQMR=59.9891;NS=93;NUMALT=1;ODDS=1.22401;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250459;QR=68775;RO=1923;RPL=32;RPP=14900.6;RPPR=4066.6;RPR=6956;RUN=1;SAF=6983;SAP=15133.9;SAR=5;SRF=1923;SRP=4178.75;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:25,21:25:900:21:756:-54.5198,0,-67.4736	0/1:165:97,67:97:3442:67:2399:-166.438,0,-260.235	1/1:130:0,130:0:0:130:4652:-418.826,-39.1339,0	1/1:226:1,225:1:36:225:8069:-722.626,-64.4345,0	0/1:111:48,63:48:1705:63:2268:-170.968,0,-120.32	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	1/1:91:0,91:0:0:91:3272:-294.699,-27.3937,0	1/1:170:0,170:0:0:170:6101:-549.165,-51.1751,0	1/1:133:0,133:0:0:133:4756:-428.182,-40.037,0	1/1:84:1,83:1:36:83:2965:-263.483,-21.6882,0	1/1:37:0,37:0:0:37:1300:-117.3,-11.1381,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:44:17,27:17:599:27:968:-74.192,0,-40.9928	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	0/1:57:27,30:27:968:30:1080:-80.3545,0,-70.2787	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:72:0,72:0:0:72:2579:-232.35,-21.6742,0	1/1:60:0,60:0:0:60:2151:-193.857,-18.0618,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:190:68,122:68:2425:122:4388:-337.881,0,-161.309	0/1:185:99,86:99:3544:86:3082:-221.916,0,-263.477	0/1:91:59,32:59:2112:32:1144:-75.8758,0,-162.955	0/1:108:52,56:52:1844:56:2016:-149.202,0,-133.726	1/1:169:11,158:11:396:158:5645:-472.185,-14.8913,0	0/1:117:53,64:53:1888:64:2277:-169.97,0,-134.978	1/1:384:1,383:1:36:383:13728:-1230.24,-111.997,0	1/1:200:0,200:0:0:200:7151:-643.553,-60.206,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:187:88,99:88:3144:99:3523:-260.987,0,-226.893	1/1:122:5,117:5:180:117:4166:-358.569,-20.1736,0	0/1:104:48,56:48:1728:56:1987:-147.794,0,-124.498	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:148:0,148:0:0:148:5316:-478.572,-44.5524,0	1/1:190:0,190:0:0:190:6819:-613.28,-57.1957,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:168:0,167:0:0:167:5961:-536.235,-50.272,0	0/1:26:12,14:12:428:14:504:-37.6802,0,-31.032	1/1:136:0,136:0:0:136:4876:-438.987,-40.9401,0	1/1:77:0,77:0:0:77:2772:-249.72,-23.1793,0	0/1:67:28,39:28:996:39:1402:-106.305,0,-69.7859	0/1:81:49,32:49:1760:32:1152:-79.6067,0,-134.3	1/1:72:0,72:0:0:72:2573:-231.818,-21.6742,0	0/1:234:122,112:122:4350:112:4024:-291.892,0,-321.232	1/1:137:1,136:1:36:136:4853:-433.325,-37.6428,0	1/1:139:0,139:0:0:139:4985:-448.782,-41.8432,0	1/1:176:0,176:0:0:176:6278:-565.111,-52.9813,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:91:0,90:0:0:90:3228:-290.373,-27.0927,0	0/1:26:16,10:16:572:10:356:-24.5545,0,-43.9866	0/1:31:21,10:21:756:10:360:-23.4124,0,-59.0353	0/1:141:67,74:67:2395:74:2645:-195.845,0,-173.361	0/1:38:24,14:24:864:14:504:-34.259,0,-66.6388	0/1:18:4,14:4:144:14:504:-40.2796,0,-7.89508	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:125:65,60:65:2336:60:2156:-156.621,0,-172.87	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:58:27,31:27:957:31:1106:-82.3908,0,-68.9841	0/1:185:87,98:87:3100:98:3528:-262.037,0,-223.538	0/1:134:67,67:67:2404:67:2408:-176.634,0,-176.278	0/1:101:45,56:45:1616:56:2016:-151.309,0,-115.326	1/1:178:1,177:1:36:177:6345:-567.512,-49.9851,0	1/1:127:0,127:0:0:127:4545:-409.214,-38.2308,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:89:0,89:0:0:89:3196:-287.793,-26.7917,0	0/1:76:38,38:38:1360:38:1360:-99.8223,0,-99.8223	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:102:0,102:0:0:102:3656:-329.215,-30.7051,0	1/1:173:0,173:0:0:173:6208:-558.79,-52.0782,0	0/1:172:78,94:78:2804:94:3369:-251.62,0,-200.822	0/1:134:51,83:51:1832:83:2969:-227.103,0,-124.823	1/1:154:2,152:2:72:152:5448:-483.61,-39.5219,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:153:79,74:79:2844:74:2664:-193.943,0,-210.14	0/1:115:65,50:65:2332:50:1771:-125.052,0,-175.521	1/1:214:0,214:0:0:214:7692:-692.307,-64.4204,0	0/1:79:35,44:35:1260:44:1584:-119.07,0,-89.9241	1/1:65:0,65:0:0:65:2335:-210.409,-19.567,0	1/1:94:0,94:0:0:94:3384:-304.774,-28.2968,0	0/1:144:62,82:62:2224:82:2944:-221.845,0,-157.076	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:71:37,34:37:1309:34:1224:-89.0939,0,-96.7364	0/1:70:38,32:38:1368:32:1148:-82.5568,0,-102.349	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	0/1:71:35,36:35:1244:36:1292:-95.2106,0,-90.8915	0/1:54:31,23:31:1101:23:824:-58.2268,0,-83.1427	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0
chr05	328276	.	G	T	111525	PASS	AB=0.534457;ABP=31.1439;AC=147;AF=0.781915;AN=188;AO=5193;CIGAR=1X;DP=6470;DPB=6470;DPRA=0;EPP=11279.5;EPPR=2771.64;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9168;MQMR=59.9976;NS=94;NUMALT=1;ODDS=3.70061;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185815;QR=45481;RO=1275;RPL=0;RPP=11279.5;RPPR=2771.64;RPR=5193;RUN=1;SAF=5193;SAP=11279.5;SAR=0;SRF=1275;SRP=2771.64;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:79:31,48:31:1116:48:1707:-130.076,0,-76.9703	1/1:122:0,122:0:0:122:4376:-393.957,-36.7257,0	1/1:148:0,148:0:0:148:5308:-477.83,-44.5524,0	0/1:61:27,34:27:957:34:1220:-91.744,0,-68.081	0/1:46:24,22:24:856:22:792:-57.7559,0,-63.5137	1/1:78:0,78:0:0:78:2780:-250.405,-23.4803,0	1/1:99:0,99:0:0:99:3552:-319.871,-29.802,0	1/1:58:0,58:0:0:58:2076:-187.102,-17.4597,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:40:0,40:0:0:40:1417:-127.826,-12.0412,0	1/1:55:0,55:0:0:55:1968:-177.394,-16.5567,0	0/1:52:23,29:23:816:29:1044:-78.6212,0,-58.1082	1/1:56:1,55:1:36:55:1963:-173.346,-13.2594,0	0/1:49:22,27:22:792:27:972:-73.0474,0,-56.8552	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:52:0,52:0:0:52:1872:-168.757,-15.6536,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:49:0,49:0:0:49:1751:-157.873,-14.7505,0	0/1:126:64,62:64:2289:62:2215:-161.493,0,-168.34	0/1:62:24,38:24:864:38:1364:-104.397,0,-59.4187	0/1:73:42,31:42:1508:31:1116:-78.7765,0,-114.039	0/1:93:38,55:38:1345:55:1968:-149.399,0,-93.3524	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:44:26,18:26:921:18:648:-45.4066,0,-69.9599	1/1:181:1,180:1:36:180:6450:-576.987,-50.8882,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:116:59,57:59:2093:57:2024:-147.513,0,-153.719	1/1:117:2,115:2:68:115:4124:-364.851,-28.7628,0	0/1:104:51,53:51:1805:53:1892:-139.249,0,-131.423	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:180:0,180:0:0:180:6425:-578.336,-54.1854,0	1/1:232:0,232:0:0:232:8306:-747.545,-69.839,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:156:0,156:0:0:156:5593:-503.492,-46.9607,0	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:69:35,34:35:1237:34:1205:-87.9828,0,-90.8612	0/1:53:19,34:19:684:34:1216:-93.792,0,-45.9357	1/1:122:0,122:0:0:122:4384:-394.732,-36.7257,0	0/1:172:58,114:58:2076:114:4078:-315.412,0,-135.333	1/1:81:0,81:0:0:81:2896:-260.846,-24.3834,0	1/1:80:0,80:0:0:80:2852:-256.691,-24.0824,0	1/1:61:0,61:0:0:61:2172:-195.747,-18.3628,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:111:0,111:0:0:111:3968:-357.311,-33.4143,0	0/1:35:14,21:14:504:21:752:-57.4702,0,-35.162	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/1:85:52,33:52:1860:33:1169:-79.9221,0,-142.092	0/1:41:15,26:15:532:26:928:-71.496,0,-35.8709	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:36:23,13:23:820:13:464:-31.2604,0,-63.2854	1/1:105:0,105:0:0:105:3772:-339.678,-31.6082,0	1/1:1:0,1:0:0:1:36:-3.59656,-0.30103,0	0/1:110:56,53:56:1996:53:1896:-137.878,0,-146.874	0/1:172:88,84:88:3141:84:3008:-219.16,0,-231.137	0/1:50:22,28:22:788:28:984:-73.8192,0,-56.1933	0/1:51:31,20:31:1100:20:720:-49.7762,0,-83.9578	1/1:177:1,176:1:36:176:6282:-561.817,-49.684,0	1/1:104:1,103:1:36:103:3700:-329.577,-27.7088,0	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:63:19,44:19:684:44:1576:-123.167,0,-42.9254	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:78:0,78:0:0:78:2792:-251.313,-23.4803,0	1/1:47:0,47:0:0:47:1680:-151.329,-14.1484,0	1/1:153:0,153:0:0:153:5456:-491.156,-46.0576,0	0/1:142:66,76:66:2368:76:2705:-200.947,0,-170.632	0/1:60:29,31:29:1040:31:1116:-82.6899,0,-75.8526	1/1:40:0,40:0:0:40:1436:-129.536,-12.0412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:58:11,47:11:381:47:1676:-133.667,0,-17.1609	0/1:57:29,27:29:1006:27:956:-69.1384,0,-73.628	1/1:148:0,148:0:0:148:5285:-475.783,-44.5524,0	0/1:96:44,52:44:1584:52:1848:-137.693,0,-113.953	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:64:0,64:0:0:64:2288:-206.182,-19.2659,0	0/1:127:65,62:65:2332:62:2228:-162.553,0,-171.909	1/1:43:0,43:0:0:43:1529:-137.874,-12.9443,0	0/1:57:25,32:25:881:32:1152:-86.8314,0,-62.4472	0/1:61:21,40:21:748:40:1428:-110.455,0,-49.2825	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:72:28,44:28:1008:44:1567:-119.646,0,-69.3622	0/1:56:38,18:38:1341:18:644:-41.4329,0,-104.13	1/1:67:0,67:0:0:67:2400:-216.252,-20.169,0	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0
chr05	328518	.	G	T	25748.1	PASS	AB=0.475208;ABP=20.3453;AC=44;AF=0.236559;AN=186;AO=1563;CIGAR=1X;DP=7791;DPB=7791;DPRA=0.994846;EPP=3302.15;EPPR=13057.5;GTI=3;LEN=1;MEANALT=1.05556;MQM=59.9565;MQMR=59.9801;NS=93;NUMALT=1;ODDS=1.37644;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55714;QR=221618;RO=6222;RPL=1551;RPP=3293.59;RPPR=13066;RPR=12;RUN=1;SAF=1562;SAP=3388.34;SAR=1;SRF=6221;SRP=13505.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:15,8:15:521:8:273:-17.9765,0,-40.2926	0/1:102:52,50:52:1852:50:1772:-129.054,0,-136.255	0/0:119:119,0:119:4200:0:0:0,-35.8226,-378.182	0/0:163:163,0:163:5840:0:0:0,-49.0679,-525.712	0/1:26:17,9:17:608:9:313:-20.6787,0,-47.2252	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/0:67:67,0:67:2399:0:0:0,-20.169,-216.166	0/0:147:147,0:147:5249:0:0:0,-44.2514,-472.542	0/0:87:87,0:87:3088:0:0:0,-26.1896,-278.147	0/0:99:99,0:99:3535:0:0:0,-29.802,-318.359	0/0:72:70,1:70:2486:1:36:0,-18.1347,-220.395	0/0:97:97,0:97:3424:0:0:0,-29.1999,-308.375	0/1:60:25,35:25:891:35:1250:-94.7433,0,-62.447	0/0:94:94,0:94:3284:0:0:0,-28.2968,-295.784	0/1:91:46,45:46:1640:45:1596:-116.537,0,-120.495	0/0:71:70,1:70:2495:1:36:0,-17.7749,-221.204	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/0:44:44,0:44:1543:0:0:0,-13.2453,-139.161	0/0:28:28,0:28:983:0:0:0,-8.42884,-88.7793	0/1:116:60,56:60:2139:56:1984:-143.912,0,-157.858	0/1:170:92,78:92:3283:78:2795:-200.612,0,-244.515	0/1:47:14,33:14:504:33:1180:-92.3596,0,-31.5497	0/1:90:53,37:53:1892:37:1301:-90.2966,0,-143.466	0/1:16:14,2:14:504:2:71:-1.92558,0,-40.8816	0/1:42:24,18:24:860:18:644:-45.6473,0,-65.0786	0/0:324:324,0:324:11556:0:0:0,-97.5337,-1039.92	0/0:217:216,1:216:7718:1:36:0,-61.7252,-691.054	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:150:88,62:88:3144:62:2215:-154.46,0,-238.032	0/0:215:206,9:206:7356:9:324:0,-35.2156,-632.583	0/1:64:39,25:39:1396:25:883:-60.5215,0,-106.673	0/1:7:6,1:6:208:1:36:-1.49107,0,-16.9519	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:12:11,1:11:392:1:36:0,-0.0140849,-32.0218	0/0:181:181,0:181:6407:0:0:0,-54.4864,-576.722	0/0:112:111,1:111:3936:1:36:0,-30.1171,-350.561	0/0:55:52,0:52:1827:0:0:0,-15.6536,-164.351	.:.:.:.:.:.:.:.	0/0:130:128,2:128:4552:2:72:0,-32.2972,-403.01	0/1:25:16,9:16:572:9:324:-21.9801,0,-44.2877	0/0:132:132,0:132:4722:0:0:0,-39.736,-425.138	0/0:78:78,0:78:2775:0:0:0,-23.4803,-249.991	0/1:46:16,30:16:568:30:1080:-83.6659,0,-37.6045	0/1:111:58,53:58:2075:53:1889:-136.872,0,-153.606	0/0:81:81,0:81:2887:0:0:0,-24.3834,-260.067	0/1:107:60,47:60:2132:47:1688:-119.996,0,-159.936	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.952	0/0:114:113,1:113:4039:1:36:0,-30.7191,-360.1	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:83:58,25:58:2084:25:900:-56.3355,0,-162.845	0/1:12:3,9:3:108:9:315:-25.0749,0,-6.46281	0/1:116:60,56:60:2135:56:1975:-143.102,0,-157.498	0/1:19:9,10:9:320:10:332:-24.4806,0,-23.4228	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/1:99:44,55:44:1580:55:1963:-147.143,0,-112.69	0/0:110:110,0:110:3889:0:0:0,-33.1133,-350.207	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:153:87,66:87:3120:66:2357:-166.33,0,-234.969	0/1:228:104,124:104:3705:124:4452:-332.149,0,-265.017	0/1:63:29,33:29:1040:33:1170:-86.5823,0,-74.8907	0/1:45:26,19:26:924:19:684:-48.344,0,-69.9313	0/0:153:151,2:151:5416:2:72:0,-39.2209,-480.714	0/0:171:170,1:170:6099:1:36:0,-47.8779,-545.183	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:40:22,18:22:784:18:636:-45.5268,0,-58.8427	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:124:124,0:124:4421:0:0:0,-37.3277,-398.062	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:173:173,0:173:6148:0:0:0,-52.0782,-553.422	0/1:105:54,51:54:1931:51:1819:-132.382,0,-142.458	0/1:76:43,33:43:1525:33:1184:-83.99,0,-114.663	0/0:110:110,0:110:3911:0:0:0,-33.1133,-352.185	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:79:47,32:47:1692:32:1128:-78.0441,0,-128.785	0/1:67:39,28:39:1385:28:999:-70.0555,0,-104.778	0/0:110:110,0:110:3932:0:0:0,-33.1133,-354.073	0/1:176:84,92:84:2935:92:3283:-242.707,0,-211.4	0/0:65:65,0:65:2308:0:0:0,-19.5669,-207.981	0/0:49:49,0:49:1735:0:0:0,-14.7505,-156.434	0/1:122:67,54:67:2372:54:1936:-137.732,0,-176.947	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/1:74:40,34:40:1432:34:1215:-87.3795,0,-106.901	0/1:97:47,50:47:1688:50:1784:-131.629,0,-123.007	0/1:34:17,17:17:608:17:608:-44.817,0,-44.817	0/1:129:65,64:65:2315:64:2277:-166.358,0,-169.777	0/1:88:30,58:30:1072:58:2071:-160.169,0,-70.3018	0/0:157:157,0:157:5598:0:0:0,-47.2617,-503.944	0/0:84:84,0:84:2969:0:0:0,-25.2865,-267.443
chr05	328564	.	A	G	44681	PASS	AB=0.496604;ABP=3.40854;AC=45;AF=0.239362;AN=188;AO=1999;CIGAR=1X;DP=9067;DPB=9067;DPRA=1.19104;EPP=182.951;EPPR=21.9113;GTI=2;LEN=1;MEANALT=1.01923;MQM=59.7699;MQMR=59.7958;NS=94;NUMALT=1;ODDS=0.613792;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71508;QR=252565;RO=7066;RPL=1203;RPP=182.951;RPPR=21.9113;RPR=796;RUN=1;SAF=0;SAP=4343.78;SAR=1999;SRF=0;SRP=15346.6;SRR=7066;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:18,22:18:639:22:788:-59.2032,0,-45.7966	0/1:36:15,21:15:536:21:752:-57.1692,0,-37.7377	0/0:105:103,1:103:3688:1:36:0,-28.0648,-328.5	0/0:224:224,0:224:8027:0:0:0,-67.4307,-722.138	0/1:43:28,15:28:1008:15:538:-35.7977,0,-78.0921	0/1:41:25,16:25:900:16:576:-39.8246,0,-68.9779	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.315	0/0:136:135,1:135:4832:1:36:0,-37.3418,-431.184	0/0:109:109,0:109:3883:0:0:0,-32.8123,-349.515	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.416	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/0:107:107,0:107:3812:0:0:0,-32.2102,-343.251	0/1:91:42,49:42:1499:49:1737:-129.21,0,-107.809	0/0:111:111,0:111:3949:0:0:0,-33.4143,-355.563	0/1:74:26,48:26:928:48:1728:-133.529,0,-61.562	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:65:65,0:65:2308:0:0:0,-19.5669,-207.979	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:31:31,0:31:1099:0:0:0,-9.33193,-99.2195	0/1:190:95,95:95:3412:95:3408:-249.735,0,-250.095	0/1:117:64,53:64:2287:53:1895:-135.586,0,-170.871	0/1:84:41,43:41:1468:43:1532:-112.815,0,-107.13	0/1:123:62,61:62:2232:61:2175:-158.975,0,-163.482	0/0:52:48,4:48:1708:4:144:0,-2.33994,-140.619	0/1:60:26,34:26:914:34:1202:-90.278,0,-64.5129	0/0:321:319,2:319:11426:2:72:0,-89.7939,-1021.33	0/0:234:234,0:234:8360:0:0:0,-70.441,-752.15	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:265:118,147:118:4216:147:5254:-393.214,0,-299.717	0/0:154:151,3:151:5380:3:108:0,-36.4176,-474.162	0/1:152:87,65:87:3083:65:2328:-164.023,0,-231.907	1/1:2:0,2:0:0:2:72:-6.83426,-0.60206,0	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:2:1,1:1:36:1:27:-2.09772,0,-2.99621	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:263:263,0:263:9400:0:0:0,-79.1709,-845.912	0/0:115:115,0:115:4123:0:0:0,-34.6184,-371.247	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.29	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:162:162,0:162:5812:0:0:0,-48.7669,-523.153	0/1:31:19,12:19:684:12:432:-29.8893,0,-52.5584	0/0:111:107,4:107:3827:4:144:0,-20.1007,-331.241	0/0:86:86,0:86:3074:0:0:0,-25.8886,-276.885	0/1:99:60,39:60:2152:39:1400:-96.4972,0,-164.053	0/1:114:55,59:55:1964:59:2108:-155.667,0,-142.718	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.317	0/1:189:80,109:80:2876:109:3920:-296.027,0,-201.691	0/0:52:52,0:52:1840:0:0:0,-15.6536,-165.878	0/0:151:149,2:149:5333:2:72:0,-38.6188,-472.819	0/0:166:166,0:166:5952:0:0:0,-49.971,-535.751	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.198	0/1:85:49,36:49:1764:36:1292:-90.9962,0,-133.411	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:132:64,68:64:2300:68:2428:-178.993,0,-167.504	0/1:51:29,22:29:1040:22:788:-55.8923,0,-78.5214	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.6985	0/1:80:32,48:32:1135:48:1720:-130.776,0,-78.3757	0/0:130:129,1:129:4632:1:36:0,-35.5393,-413.29	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:271:153,118:153:5475:118:4232:-299.43,0,-411.296	0/1:177:103,74:103:3681:74:2645:-185.012,0,-278.201	0/1:73:40,33:40:1417:33:1184:-84.8228,0,-105.85	0/1:72:32,40:32:1152:40:1432:-107.494,0,-82.2936	0/0:138:138,0:138:4935:0:0:0,-41.5421,-444.291	0/0:111:111,0:111:3945:0:0:0,-33.4143,-355.229	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.968	0/0:57:57,0:57:2007:0:0:0,-17.1587,-180.844	0/1:44:25,19:25:887:19:684:-48.645,0,-66.9028	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:137:137,0:137:4890:0:0:0,-41.2411,-440.25	0/0:70:70,0:70:2486:0:0:0,-21.0721,-223.938	0/0:129:129,0:129:4597:0:0:0,-38.8329,-413.888	0/1:191:96,95:96:3448:95:3391:-247.871,0,-252.959	0/1:64:31,33:31:1092:33:1165:-85.8499,0,-79.3233	0/0:101:101,0:101:3606:0:0:0,-30.404,-324.746	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7367	0/1:128:60,68:60:2152:68:2423:-179.774,0,-155.362	0/1:123:65,58:65:2319:58:2076:-150.084,0,-171.753	0/0:263:261,2:261:9331:2:72:0,-72.3342,-832.739	0/1:63:36,27:36:1292:27:968:-68.3853,0,-97.6165	0/0:84:84,0:84:2989:0:0:0,-25.2865,-269.05	0/0:59:59,0:59:2091:0:0:0,-17.7608,-188.453	0/1:168:94,74:94:3376:74:2660:-189.069,0,-253.392	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.537	0/1:88:49,39:49:1755:39:1395:-99.3561,0,-131.742	0/1:99:44,55:44:1575:55:1969:-147.656,0,-112.049	0/1:52:29,23:29:1044:23:828:-59.1906,0,-78.5808	0/1:116:53,63:53:1896:63:2255:-168.289,0,-135.943	0/1:112:36,76:36:1287:76:2697:-209.201,0,-82.4112	0/0:132:131,0:131:4692:0:0:0,-39.4349,-422.223	0/0:129:129,0:129:4629:0:0:0,-38.8329,-416.769
chr05	341903	.	G	A	47149.5	PASS	AB=0.62506;ABP=564.607;AC=44;AF=0.236559;AN=186;AO=2612;CIGAR=1X;DP=8367;DPB=8367;DPRA=1.18941;EPP=5640.21;EPPR=12393.6;GTI=6;LEN=1;MEANALT=1.02083;MQM=59.874;MQMR=59.9001;NS=93;NUMALT=1;ODDS=0.782455;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93580;QR=205422;RO=5754;RPL=4;RPP=5640.21;RPPR=12419.6;RPR=2608;RUN=1;SAF=2612;SAP=5674.9;SAR=0;SRF=5751;SRP=12471.6;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:18,29:18:648:29:1044:-80.1228,0,-44.5035	0/1:160:48,112:48:1716:112:3988:-310.737,0,-106.501	0/0:176:176,0:176:6251:0:0:0,-52.9813,-562.298	0/0:136:136,0:136:4880:0:0:0,-40.9401,-439.345	0/1:79:35,44:35:1256:44:1584:-119.07,0,-89.5639	0/1:59:20,39:20:720:39:1400:-108.538,0,-47.3653	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.827	0/0:115:115,0:115:4106:0:0:0,-34.6184,-369.72	0/0:72:71,1:71:2523:1:36:0,-18.0759,-223.722	0/0:79:79,0:79:2818:0:0:0,-23.7814,-253.858	0/0:64:64,0:64:2274:0:0:0,-19.2659,-204.899	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.568	0/1:59:25,34:25:896:34:1220:-92.346,0,-63.1978	0/0:106:106,0:106:3772:0:0:0,-31.9092,-339.658	0/1:59:31,28:31:1107:28:1008:-73.2756,0,-82.1344	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.136	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.608	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:249:85,164:85:3032:164:5881:-454.439,0,-198.132	0/1:154:47,107:47:1680:107:3840:-299.392,0,-105.128	0/1:135:24,111:24:864:111:3996:-319.18,0,-37.4435	0/1:52:23,29:23:811:29:1044:-78.6212,0,-57.6333	0/0:39:37,2:37:1328:2:72:0,-4.90345,-112.986	0/1:153:66,87:66:2340:87:3107:-233.799,0,-164.756	0/0:225:225,0:225:8042:0:0:0,-67.7317,-723.8	0/0:94:94,0:94:3339:0:0:0,-28.2968,-300.706	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/1:334:105,229:105:3768:229:8201:-637.366,0,-238.761	0/0:139:132,7:132:4684:7:252:0,-18.8142,-398.691	0/1:154:102,52:102:3613:52:1856:-120.928,0,-279.013	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/0:252:252,0:252:8994:0:0:0,-75.8596,-809.442	0/0:65:65,0:65:2307:0:0:0,-19.5669,-207.889	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.432	0/1:34:13,21:13:468:21:752:-57.7666,0,-32.2246	0/0:139:139,0:139:4975:0:0:0,-41.8432,-447.898	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:41:14,27:14:504:27:972:-75.4557,0,-33.3273	0/1:81:28,53:28:1004:53:1896:-146.535,0,-66.2924	0/0:104:104,0:104:3710:0:0:0,-31.3071,-334.085	0/1:237:80,157:80:2863:157:5644:-436.729,0,-186.476	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.123	0/0:124:124,0:124:4436:0:0:0,-37.3277,-399.394	0/0:125:125,0:125:4433:0:0:0,-37.6287,-399.144	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:232:232,0:232:8292:0:0:0,-69.839,-746.277	0/1:52:22,30:22:788:30:1080:-81.8597,0,-55.5912	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	0/1:175:68,107:68:2422:107:3823:-291.152,0,-165.555	0/1:23:8,15:8:288:15:536:-41.6511,0,-19.3437	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:88:27,61:27:964:61:2192:-170.925,0,-60.5862	0/0:104:103,1:103:3680:1:32:0,-28.1078,-328.202	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:83:36,47:36:1288:47:1680:-126.502,0,-91.2381	0/1:151:42,109:42:1494:109:3916:-307.176,0,-89.2975	0/1:94:37,57:37:1328:57:2039:-155.48,0,-91.5254	0/1:123:37,85:37:1316:85:3036:-236.385,0,-81.6458	0/0:105:103,2:103:3665:2:72:0,-24.7714,-323.188	0/0:160:160,0:160:5721:0:0:0,-48.1648,-514.776	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.237	0/1:85:46,39:46:1644:39:1404:-101.072,0,-122.66	0/0:21:21,0:21:721:0:0:0,-6.32163,-65.2065	0/0:96:96,0:96:3422:0:0:0,-28.8989,-308.194	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.483	0/0:82:82,0:82:2911:0:0:0,-24.6845,-262.222	0/1:208:73,135:73:2609:135:4833:-372.502,0,-172.426	0/1:169:60,109:60:2143:109:3908:-301.036,0,-142.263	0/0:71:70,1:70:2516:1:36:0,-17.7749,-223.089	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:147:45,102:45:1607:102:3648:-283.711,0,-100.628	0/1:134:58,76:58:2079:76:2703:-203.176,0,-147.041	0/0:180:180,0:180:6432:0:0:0,-54.1854,-578.969	0/1:74:39,35:39:1404:35:1256:-90.7512,0,-104.383	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:59:59,0:59:2082:0:0:0,-17.7608,-187.649	0/1:90:46,44:46:1639:44:1584:-115.759,0,-120.705	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.343	0/1:67:25,42:25:873:42:1496:-114.765,0,-58.7068	0/1:57:21,36:21:756:36:1292:-99.4251,0,-51.1514	0/1:73:29,44:29:1040:44:1580:-120.516,0,-71.9382	0/1:90:43,47:43:1544:47:1669:-123.403,0,-112.16	0/1:53:16,37:16:567:37:1324:-103.508,0,-35.3836	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926
chr05	341931	.	C	A	117469	PASS	AB=0.372956;ABP=577.378;AC=142;AF=0.763441;AN=186;AO=5693;CIGAR=1X;DP=8294;DPB=8294;DPRA=30.0399;EPP=12339.2;EPPR=5642.32;GTI=6;LEN=1;MEANALT=1.04348;MQM=59.8828;MQMR=59.9157;NS=93;NUMALT=1;ODDS=0.423935;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202434;QR=91609;RO=2597;RPL=5693;RPP=12365.2;RPPR=5642.32;RPR=0;RUN=1;SAF=5690;SAP=12339.2;SAR=3;SRF=2597;SRP=5642.32;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:29,18:29:1022:18:640:-43.7702,0,-78.1388	0/1:158:107,51:107:3762:51:1832:-117.538,0,-291.176	1/1:170:0,170:0:0:170:6040:-542.737,-51.1751,0	1/1:134:0,134:0:0:134:4769:-429.365,-40.338,0	0/1:79:43,36:43:1535:36:1288:-92.4417,0,-114.661	0/1:56:37,19:37:1316:19:669:-43.6744,0,-101.883	1/1:71:0,71:0:0:71:2514:-226.512,-21.3731,0	1/1:112:0,111:0:0:111:3935:-353.974,-33.4143,0	1/1:75:1,73:1:36:73:2604:-231.001,-19.0378,0	1/1:76:0,76:0:0:76:2712:-244.324,-22.8783,0	1/1:63:0,63:0:0:63:2252:-202.921,-18.9649,0	1/1:49:0,49:0:0:49:1755:-158.229,-14.7505,0	0/1:61:35,26:35:1212:26:901:-63.0362,0,-91.0174	1/1:105:0,105:0:0:105:3702:-333.38,-31.6082,0	0/1:56:27,29:27:968:29:1020:-75.2511,0,-70.5797	1/1:43:0,43:0:0:43:1514:-136.552,-12.9443,0	1/1:56:0,56:0:0:56:2000:-180.273,-16.8577,0	1/1:45:0,45:0:0:45:1593:-143.657,-13.5464,0	1/1:44:0,44:0:0:44:1572:-141.771,-13.2453,0	0/1:244:162,82:162:5682:82:2898:-187.603,0,-438.052	0/1:155:106,49:106:3726:49:1732:-109.502,0,-288.881	0/1:138:112,26:112:3975:26:928:-42.2961,0,-316.39	0/1:48:29,19:29:1044:19:684:-47.3107,0,-79.8254	1/1:36:2,34:2:72:34:1216:-102.91,-4.00036,0	0/1:150:86,64:86:3044:64:2268:-159.217,0,-229.035	1/1:221:0,221:0:0:221:7825:-704.281,-66.5276,0	1/1:94:0,94:0:0:94:3356:-302.235,-28.2968,0	1/1:29:0,29:0:0:29:1021:-92.2011,-8.72987,0	0/1:331:228,103:228:8038:103:3645:-228.599,0,-623.798	1/1:138:7,131:7:222:131:4688:-401.791,-21.253,0	0/1:151:52,99:52:1852:99:3513:-270.92,0,-121.494	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:122:0,122:0:0:122:4342:-390.957,-36.7257,0	1/1:248:0,248:0:0:248:8806:-792.532,-74.6554,0	1/1:64:0,64:0:0:64:2281:-205.55,-19.2659,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:107:0,106:0:0:106:3784:-340.397,-31.9092,0	0/1:35:22,13:22:746:13:468:-31.9236,0,-56.8875	1/1:139:0,139:0:0:139:4946:-445.289,-41.8432,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:40:26,14:26:927:14:504:-33.6284,0,-71.7062	0/1:80:53,27:53:1849:27:964:-62.9944,0,-142.603	1/1:104:0,104:0:0:104:3704:-333.558,-31.3071,0	0/1:236:155,81:155:5442:81:2852:-185.787,0,-418.87	1/1:104:0,104:0:0:104:3684:-331.764,-31.3071,0	1/1:124:0,124:0:0:124:4416:-397.597,-37.3277,0	1/1:129:0,129:0:0:129:4596:-413.805,-38.8329,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:229:0,229:0:0:229:8169:-735.22,-68.9359,0	0/1:51:29,22:29:1040:22:788:-55.8923,0,-78.5618	0/0:12:11,1:11:392:1:36:0,-0.0140849,-32.0218	0/1:175:109,66:109:3795:66:2360:-159.978,0,-288.441	0/1:23:15,8:15:527:8:279:-18.5238,0,-40.8365	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:88:60,28:60:2131:28:1000:-63.8023,0,-165.437	1/1:105:1,104:1:36:104:3699:-329.516,-28.0099,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:82:48,34:48:1681:34:1197:-83.349,0,-126.876	0/1:149:111,38:111:3962:38:1352:-77.1269,0,-311.914	0/1:90:55,35:55:1965:35:1236:-84.4493,0,-150.031	0/1:122:86,36:86:3044:36:1288:-79.4873,0,-237.464	1/1:103:2,101:2:72:101:3605:-317.815,-24.1694,0	1/1:158:0,158:0:0:158:5636:-507.338,-47.5627,0	1/1:34:0,33:0:0:33:1159:-104.249,-9.93399,0	1/1:77:0,77:0:0:77:2744:-247.2,-23.1793,0	0/1:83:39,44:39:1388:44:1565:-116.155,0,-100.233	1/1:21:0,21:0:0:21:733:-66.2889,-6.32163,0	1/1:99:0,99:0:0:99:3521:-317.091,-29.802,0	1/1:41:0,41:0:0:41:1468:-132.415,-12.3422,0	1/1:82:0,82:0:0:82:2929:-263.839,-24.6845,0	0/1:209:135,74:135:4759:74:2634:-174.383,0,-365.546	0/1:171:111,60:111:3965:60:2093:-137.16,0,-305.561	1/1:69:1,68:1:36:68:2408:-213.374,-17.1728,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:143:99,44:99:3508:44:1569:-98.4098,0,-272.879	0/1:135:74,61:74:2614:61:2176:-155.467,0,-194.868	1/1:179:0,179:0:0:179:6354:-571.954,-53.8844,0	0/1:73:36,37:36:1255:37:1312:-96.4065,0,-91.2762	1/1:49:0,49:0:0:49:1739:-156.792,-14.7505,0	1/1:58:0,58:0:0:58:2064:-186.031,-17.4597,0	0/1:89:44,45:44:1526:45:1593:-116.866,0,-110.836	1/1:35:0,35:0:0:35:1256:-113.343,-10.5361,0	0/1:67:41,26:41:1455:26:919:-62.7955,0,-111.076	0/1:56:35,21:35:1226:21:752:-51.0914,0,-93.7846	0/1:74:46,28:46:1591:28:995:-67.5875,0,-121.203	0/1:91:47,44:47:1654:44:1580:-115.097,0,-121.752	0/1:51:36,15:36:1269:15:521:-31.8628,0,-99.1582	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0
chr05	352061	.	T	A	16221.6	PASS	AB=0.500257;ABP=3.01142;AC=45;AF=0.241935;AN=186;AO=985;CIGAR=1X;DP=4298;DPB=4298;DPRA=0.994128;EPP=2141.91;EPPR=7177.57;GTI=2;LEN=1;MEANALT=1;MQM=59.9939;MQMR=59.9903;NS=93;NUMALT=1;ODDS=0.129904;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35161;QR=118328;RO=3312;RPL=0;RPP=2141.91;RPPR=7168.89;RPR=985;RUN=1;SAF=0;SAP=2141.91;SAR=985;SRF=1;SRP=7186.24;SRR=3311;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:14,11:14:500:11:377:-26.7322,0,-37.8104	0/1:27:10,17:10:360:17:597:-45.9283,0,-24.6165	0/0:66:66,0:66:2338:0:0:0,-19.868,-210.676	0/0:92:91,0:91:3230:0:0:0,-27.3937,-290.474	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.666	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.027	0/1:31:16,15:16:572:15:536:-39.2429,0,-42.4815	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:43:16,27:16:576:27:968:-74.4931,0,-39.2307	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:77:36,41:36:1292:41:1476:-109.957,0,-93.4045	0/1:55:28,27:28:985:27:957:-69.8872,0,-72.4049	0/1:49:19,30:19:669:30:1080:-82.7628,0,-45.7835	0/1:70:36,34:36:1284:34:1216:-88.6745,0,-94.7913	0/0:21:20,1:20:720:1:36:0,-2.72335,-61.5305	0/1:37:12,25:12:417:25:896:-69.8222,0,-26.7221	0/0:145:145,0:145:5196:0:0:0,-43.6493,-467.779	0/0:97:97,0:97:3469:0:0:0,-29.1999,-312.42	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:139:57,82:57:2037:82:2933:-222.359,0,-141.757	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:59:29,30:29:1036:30:1080:-79.7525,0,-75.7931	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	0/0:130:130,0:130:4676:0:0:0,-39.1339,-420.999	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	.:.:.:.:.:.:.:.	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8171	0/1:20:13,7:13:468:7:248:-16.6436,0,-36.439	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.701	0/1:31:15,16:15:540:16:572:-42.4815,0,-39.6046	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:81:40,41:40:1440:41:1476:-108.753,0,-105.514	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.297	0/0:64:63,1:63:2260:1:36:0,-15.6676,-200.064	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:67:29,38:29:1044:38:1360:-102.532,0,-74.1058	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:48:27,21:27:968:21:756:-53.9178,0,-72.9879	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:123:58,65:58:2068:65:2299:-170.143,0,-149.364	0/1:111:67,44:67:2389:44:1561:-107.365,0,-181.851	0/1:26:18,8:18:648:8:288:-18.4406,0,-50.8251	0/1:56:25,31:25:881:31:1116:-83.894,0,-62.7482	0/0:84:83,1:83:2939:1:36:0,-21.6882,-261.14	0/0:92:89,3:89:3188:3:108:0,-17.6196,-277.068	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:46:25,21:25:881:21:737:-52.8032,0,-65.7585	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.145	0/1:91:37,54:37:1320:54:1940:-147.478,0,-91.7082	0/1:38:21,17:21:756:17:612:-43.9743,0,-56.9281	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:57:28,29:28:1004:29:1035:-76.305,0,-73.5172	0/1:63:33,30:33:1173:30:1057:-76.4741,0,-86.9107	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/1:26:15,11:15:532:11:392:-27.7933,0,-40.3863	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:35:35,0:35:1226:0:0:0,-10.536,-110.64	0/1:101:51,50:51:1828:50:1760:-128.277,0,-134.397	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/1:62:37,25:37:1332:25:900:-62.6572,0,-101.519	0/1:48:31,17:31:1112:17:604:-40.2412,0,-85.9419	0/1:19:9,10:9:324:10:348:-25.9342,0,-23.7863	0/1:49:34,15:34:1224:15:536:-33.8243,0,-95.7166	0/1:47:17,30:17:612:30:1076:-83.0044,0,-41.265	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:92:92,0:92:3276:0:0:0,-27.6948,-295.059
chr05	380220	.	G	C	26323	PASS	AB=0.46978;ABP=31.8837;AC=41;AF=0.222826;AN=184;AO=1718;CIGAR=1X;DP=8912;DPB=8912;DPRA=0.975761;EPP=3733.6;EPPR=15611.6;GTI=2;LEN=1;MEANALT=1.06977;MQM=42.0722;MQMR=55.6166;NS=92;NUMALT=1;ODDS=2.35891;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61427;QR=257542;RO=7188;RPL=1718;RPP=3733.6;RPPR=15611.6;RPR=0;RUN=1;SAF=0;SAP=3733.6;SAR=1718;SRF=0;SRP=15611.6;SRR=7188;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:20,21:20:716:21:756:-53.9812,0,-52.0433	0/1:151:84,67:84:3012:67:2408:-161.423,0,-224.362	0/0:119:119,0:119:4280:0:0:0,-35.8226,-383.273	0/0:223:223,0:223:7992:0:0:0,-67.1297,-716.606	0/1:85:47,38:47:1684:38:1341:-90.8977,0,-126.074	0/1:44:18,26:18:648:26:936:-67.7924,0,-45.2625	0/0:104:104,0:104:3720:0:0:0,-31.3071,-331.916	0/0:129:129,0:129:4636:0:0:0,-38.8329,-415.479	0/0:88:88,0:88:3148:0:0:0,-26.4906,-282.485	0/0:125:124,0:124:4440:0:0:0,-37.3277,-398.802	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.937	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.088	0/1:83:47,36:47:1684:36:1296:-87.9377,0,-126.489	0/0:50:50,0:50:1775:0:0:0,-15.0515,-159.379	0/1:70:35,35:35:1260:35:1260:-88.9289,0,-92.2999	0/0:43:43,0:43:1531:0:0:0,-12.9443,-137.695	0/0:57:57,0:57:2031:0:0:0,-17.1587,-182.173	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.084	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.13	0/1:188:109,79:109:3897:79:2831:-191.199,0,-292.969	0/1:149:70,79:70:2508:79:2830:-202.739,0,-180.892	0/1:116:46,70:46:1643:70:2504:-182.481,0,-112.969	0/1:54:29,25:29:1040:25:896:-61.5338,0,-76.6772	0/0:145:143,2:143:5128:2:72:0,-36.9307,-452.601	0/1:99:56,43:56:2012:43:1525:-103.166,0,-150.812	0/0:315:315,0:315:11288:0:0:0,-94.8244,-1011.4	0/0:100:100,0:100:3580:0:0:0,-30.103,-321.473	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.403	0/1:294:129,164:129:4632:164:5892:-427.42,0,-327.889	0/0:168:165,3:165:5890:3:108:0,-40.6719,-518.114	0/1:84:41,43:41:1472:43:1542:-109.996,0,-107.282	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.546	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6839	0/1:5:2,3:2:72:3:108:-8.30241,0,-5.32664	0/0:4:4,0:4:131:0:0:0,-1.20412,-12.1074	.:.:.:.:.:.:.:.	0/0:195:195,0:195:7000:0:0:0,-58.7008,-628.212	0/0:218:218,0:218:7795:0:0:0,-65.6245,-699.954	0/0:68:68,0:68:2427:0:0:0,-20.47,-217.642	.:.:.:.:.:.:.:.	0/0:149:149,0:149:5348:0:0:0,-44.8535,-480.329	0/1:32:14,18:14:504:18:648:-45.8847,0,-35.9969	0/0:214:214,0:214:7660:0:0:0,-64.4204,-683.075	0/0:60:60,0:60:2147:0:0:0,-18.0618,-193.332	0/1:57:26,31:26:928:31:1112:-80.239,0,-66.3277	0/1:125:62,63:62:2201:63:2256:-158.999,0,-160.405	0/0:156:155,1:155:5544:1:36:0,-43.458,-493.35	0/1:210:122,87:122:4367:87:3096:-206.212,0,-328.045	0/0:113:113,0:113:4051:0:0:0,-34.0164,-364.253	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.044	0/0:194:194,0:194:6947:0:0:0,-58.3998,-620.239	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0704	0/0:168:168,0:168:6025:0:0:0,-50.573,-539.172	0/1:14:5,9:5:180:9:324:-23.2623,0,-12.3257	0/1:14:11,3:11:396:3:108:-4.71208,0,-31.5733	0/1:82:47,35:47:1684:35:1245:-84.8587,0,-127	0/1:60:30,30:30:1076:30:1076:-77.0376,0,-78.9106	1/1:2:0,2:0:0:2:72:-6.68992,-0.60206,0	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.8799	0/1:57:30,27:30:1076:27:968:-67.774,0,-79.857	0/0:140:140,0:140:5015:0:0:0,-42.1442,-450.43	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5374	0/1:155:91,64:91:3264:64:2300:-156.183,0,-246.634	0/1:207:107,99:107:3844:99:3531:-244.464,0,-283.065	0/1:76:46,30:46:1644:30:1072:-72.1915,0,-125.227	0/1:63:39,24:39:1404:24:852:-54.7097,0,-107.349	0/0:184:184,0:184:6612:0:0:0,-55.3895,-593.955	0/0:140:140,0:140:5004:0:0:0,-42.1442,-449.883	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6802	0/0:72:72,0:72:2580:0:0:0,-21.6742,-230.377	0/1:66:25,41:25:887:41:1472:-108.652,0,-60.2168	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.568	0/0:147:147,0:147:5264:0:0:0,-44.2514,-472.242	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.452	0/0:102:102,0:102:3652:0:0:0,-30.7051,-327.794	0/1:153:111,42:111:3972:42:1478:-83.4553,0,-311.128	0/1:80:46,34:46:1643:34:1220:-81.4748,0,-123.632	0/0:89:89,0:89:3188:0:0:0,-26.7917,-286.759	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7207	0/1:108:68,40:68:2440:40:1425:-93.7975,0,-186.888	0/1:58:23,35:23:824:35:1252:-92.0626,0,-56.9509	0/0:272:271,0:271:9736:0:0:0,-81.5791,-872.269	0/1:105:46,59:46:1652:59:2077:-150.631,0,-115.251	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.466	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.059	0/1:136:66,70:66:2372:70:2498:-176.126,0,-172.495	0/0:51:51,0:51:1836:0:0:0,-15.3525,-164.595	0/1:86:51,35:51:1832:35:1256:-83.3592,0,-138.484	0/1:79:54,25:54:1935:25:900:-53.8898,0,-150.301	0/1:16:11,5:11:396:5:180:-11.4497,0,-31.0933	0/1:73:43,30:43:1539:30:1076:-71.4967,0,-116.679	0/1:65:20,45:20:716:45:1592:-119.192,0,-45.0932	0/0:120:120,0:120:4312:0:0:0,-36.1236,-387.098	0/0:93:92,0:92:3295:0:0:0,-27.6948,-295.657
chr05	387731	.	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chr05	566016	.	T	A	383007	PASS	AB=0.498168;ABP=3.22512;AC=144;AF=0.765957;AN=188;AO=13955;CIGAR=1X;DP=17688;DPB=17688;DPRA=63.3871;EPP=30071.8;EPPR=8063.55;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.6263;MQMR=59.6545;NS=94;NUMALT=1;ODDS=0.90947;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=497944;QR=133411;RO=3728;RPL=6722;RPP=43.6421;RPPR=40.5894;RPR=7233;RUN=1;SAF=6749;SAP=35.5083;SAR=7206;SRF=1741;SRP=38.2594;SRR=1987;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:122:57,65:57:2044:65:2322:-172.457,0,-147.506	0/1:248:127,121:127:4547:121:4314:-313.735,0,-334.566	1/1:446:0,446:0:0:446:15926:-1431.67,-134.259,0	1/1:315:2,313:2:72:313:11212:-1002.04,-87.9877,0	0/1:95:37,58:37:1323:58:2076:-158.506,0,-90.7735	0/1:79:36,43:36:1296:43:1544:-115.456,0,-93.0597	1/1:179:0,179:0:0:179:6416:-577.499,-53.8844,0	1/1:296:2,294:2:72:294:10520:-939.02,-82.2682,0	1/1:213:0,213:0:0:213:7616:-685.434,-64.1194,0	1/1:266:0,266:0:0:266:9513:-856.064,-80.074,0	1/1:100:0,100:0:0:100:3558:-320.337,-30.103,0	1/1:182:0,182:0:0:182:6519:-586.69,-54.7875,0	0/1:184:85,99:85:3052:99:3560:-265.157,0,-219.414	1/1:182:0,182:0:0:182:6488:-583.819,-54.7875,0	0/1:163:89,74:89:3192:74:2611:-186.162,0,-238.415	1/1:147:0,147:0:0:147:5237:-471.382,-44.2514,0	1/1:170:0,170:0:0:170:6054:-544.868,-51.1751,0	1/1:117:0,117:0:0:117:4200:-378.123,-35.2205,0	1/1:77:0,77:0:0:77:2748:-247.557,-23.1793,0	0/1:338:140,198:140:5011:198:7074:-534.647,0,-349.303	0/1:288:145,143:145:5159:143:5108:-373.129,0,-377.719	0/1:176:138,37:138:4960:37:1328:-66.7752,0,-393.226	0/1:175:72,103:72:2575:103:3683:-278.964,0,-179.319	0/1:230:29,201:29:1044:201:7191:-577.94,0,-25.0203	0/1:156:71,85:71:2535:85:3056:-228.296,0,-181.423	1/1:508:0,508:0:0:508:18065:-1625.24,-152.923,0	1/1:535:0,535:0:0:535:19075:-1716.03,-161.051,0	1/1:69:0,69:0:0:69:2467:-222.276,-20.7711,0	0/1:332:184,148:184:6586:148:5288:-376.084,0,-492.856	1/1:319:15,304:15:536:304:10806:-923.416,-47.4714,0	0/1:180:88,92:88:3152:92:3308:-243.703,0,-229.698	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:20:0,20:0:0:20:720:-65.0797,-6.0206,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:8:0,8:0:0:8:288:-26.2535,-2.40824,0	0/1:10:4,6:4:144:6:216:-16.7794,0,-10.3033	1/1:383:0,383:0:0:383:13640:-1227.23,-115.294,0	1/1:204:0,204:0:0:204:7239:-651.438,-61.4101,0	1/1:152:0,152:0:0:152:5460:-491.258,-45.7566,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:436:0,434:0:0:434:15453:-1390.06,-130.647,0	0/1:75:37,38:37:1319:38:1355:-99.6715,0,-96.4163	1/1:270:0,270:0:0:270:9592:-862.237,-81.2781,0	1/1:178:0,178:0:0:178:6255:-563.016,-53.5833,0	0/1:142:72,70:72:2584:70:2507:-183.044,0,-190.045	0/1:198:88,110:88:3148:110:3921:-293.401,0,-223.932	1/1:230:0,230:0:0:230:8232:-740.848,-69.2369,0	0/1:198:107,91:107:3820:91:3247:-232.825,0,-283.274	1/1:202:0,202:0:0:202:7214:-648.943,-60.8081,0	1/1:228:0,228:0:0:228:8170:-735.247,-68.6348,0	1/1:207:1,206:1:36:206:7381:-660.66,-58.7149,0	0/1:14:5,9:5:172:9:324:-25.2914,0,-11.6036	1/1:418:0,418:0:0:418:14967:-1346.62,-125.831,0	0/1:92:50,42:50:1796:42:1493:-106.928,0,-134.199	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:255:139,116:139:4972:116:4146:-296.473,0,-370.811	0/1:68:42,26:42:1512:26:921:-62.7239,0,-115.889	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:121:57,64:57:2032:64:2272:-168.284,0,-145.381	1/1:214:2,212:2:72:212:7573:-674.7,-57.5837,0	1/1:2:0,2:0:0:2:72:-6.8351,-0.60206,0	0/1:283:147,136:147:5260:136:4847:-350.956,0,-388.327	0/1:306:164,142:164:5853:142:5089:-366.016,0,-434.727	0/1:235:117,118:117:4187:118:4191:-306.348,0,-306.229	0/1:153:82,71:82:2922:71:2506:-179.712,0,-217.042	1/1:239:0,239:0:0:239:8527:-767.376,-71.9462,0	1/1:317:3,314:3:108:314:11194:-997.104,-85.3513,0	1/1:85:0,85:0:0:85:3023:-272.202,-25.5876,0	1/1:158:0,158:0:0:158:5640:-507.08,-47.5627,0	0/1:182:95,87:95:3399:87:3097:-224.151,0,-251.323	1/1:53:1,52:1:36:52:1872:-165.146,-12.3563,0	1/1:204:0,204:0:0:204:7304:-657.035,-61.4101,0	1/1:240:0,240:0:0:240:8582:-771.009,-72.2472,0	1/1:298:0,298:0:0:298:10596:-953.082,-89.7069,0	0/1:342:176,165:176:6302:165:5886:-426.813,0,-464.241	0/1:150:79,71:79:2836:71:2518:-181.649,0,-210.229	1/1:257:3,254:3:108:254:9089:-807.846,-67.2895,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:350:170,180:170:6075:180:6423:-472.761,0,-441.386	0/1:228:113,115:113:4048:115:4096:-299.539,0,-295.861	1/1:332:0,332:0:0:332:11795:-1061.13,-99.942,0	0/1:176:100,76:100:3568:76:2701:-190.334,0,-268.219	1/1:164:1,163:1:36:163:5816:-519.913,-45.7706,0	1/1:166:0,166:0:0:166:5936:-534.305,-49.971,0	0/1:280:134,145:134:4794:145:5191:-382.888,0,-347.22	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:111:61,50:61:2164:50:1779:-126.978,0,-161.554	0/1:129:70,59:70:2508:59:2116:-151.872,0,-186.996	0/1:102:48,54:48:1716:54:1915:-141.876,0,-124.021	0/1:220:110,110:110:3948:110:3906:-285.473,0,-288.944	0/1:171:121,50:121:4348:50:1784:-109.234,0,-340.004	1/1:174:0,174:0:0:174:6171:-555.388,-52.3792,0	1/1:251:0,251:0:0:251:8941:-804.563,-75.5585,0
chr05	572983	.	A	G	49313.7	PASS	AB=0.477592;ABP=9.53053;AC=140;AF=0.76087;AN=184;AO=2419;CIGAR=1X;DP=3208;DPB=3208;DPRA=8.8022;EPP=5255.8;EPPR=1709.79;GTI=2;LEN=1;MEANALT=1.03297;MQM=59.7788;MQMR=59.4898;NS=92;NUMALT=1;ODDS=1.74391;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84507;QR=27902;RO=786;RPL=0;RPP=5255.8;RPPR=1709.79;RPR=2419;RUN=1;SAF=0;SAP=5255.8;SAR=2419;SRF=0;SRP=1709.79;SRR=786;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:4,3:4:144:3:99:-7.12937,0,-11.2064	0/1:61:33,28:33:1171:28:981:-70.2349,0,-86.5349	1/1:44:0,44:0:0:44:1562:-140.87,-13.2453,0	1/1:48:0,48:0:0:48:1677:-151.212,-14.4494,0	0/1:10:2,8:2:68:8:288:-23.2571,0,-3.44741	0/1:31:20,11:20:716:11:388:-25.9254,0,-55.4194	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	1/1:51:0,51:0:0:51:1799:-162.191,-15.3525,0	1/1:25:0,25:0:0:25:878:-79.3359,-7.52575,0	1/1:36:0,36:0:0:36:1262:-113.795,-10.8371,0	1/1:33:0,33:0:0:33:1158:-104.525,-9.93399,0	1/1:38:0,38:0:0:38:1313:-118.457,-11.4391,0	0/1:30:20,10:20:692:10:347:-22.5318,0,-53.5595	1/1:27:0,27:0:0:27:929:-83.9199,-8.12781,0	0/1:34:14,20:14:504:20:703:-53.3585,0,-35.4584	1/1:28:1,27:1:27:27:913:-79.7753,-5.72906,0	1/1:42:0,42:0:0:42:1449:-130.701,-12.6433,0	1/1:28:0,28:0:0:28:985:-88.9615,-8.42884,0	1/1:20:0,20:0:0:20:684:-61.8712,-6.0206,0	0/1:37:21,16:21:752:16:568:-40.3091,0,-56.8635	0/1:59:29,30:29:1044:30:1063:-78.2201,0,-76.5048	0/1:32:25,7:25:887:7:244:-12.6665,0,-70.5133	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:16:0,16:0:0:16:568:-51.4503,-4.81648,0	0/1:30:13,17:13:450:17:604:-45.6597,0,-31.3032	1/1:77:1,76:1:36:76:2707:-239.756,-19.581,0	1/1:63:0,63:0:0:63:2215:-199.609,-18.9649,0	1/1:12:0,12:0:0:12:417:-37.8577,-3.61236,0	0/1:77:46,31:46:1624:31:1100:-76.1301,0,-123.212	0/1:83:8,75:8:284:75:2572:-206.732,0,-0.917864	0/1:53:26,27:26:923:27:948:-69.6754,0,-67.4222	0/1:10:4,6:4:144:6:207:-15.9483,0,-10.2939	1/1:10:0,10:0:0:10:347:-31.49,-3.0103,0	0/1:4:2,2:2:72:2:72:-5.62401,0,-5.62401	.:.:.:.:.:.:.:.	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:95:0,95:0:0:95:3329:-299.825,-28.5979,0	1/1:55:0,55:0:0:55:1934:-174.328,-16.5567,0	1/1:33:0,33:0:0:33:1162:-104.874,-9.93399,0	.:.:.:.:.:.:.:.	1/1:51:0,51:0:0:51:1790:-161.376,-15.3525,0	0/1:19:6,13:6:212:13:449:-35.0087,0,-13.7052	1/1:26:0,26:0:0:26:920:-83.1122,-7.82678,0	1/1:21:0,21:0:0:21:711:-64.3029,-6.32163,0	0/1:33:22,11:22:788:11:388:-25.3234,0,-61.3108	0/1:22:14,8:14:504:8:284:-19.2807,0,-39.0754	1/1:40:0,40:0:0:40:1379:-124.384,-12.0412,0	0/1:63:38,25:38:1355:25:867:-59.3772,0,-103.285	1/1:28:0,28:0:0:28:974:-87.9682,-8.42884,0	1/1:61:0,61:0:0:61:2105:-189.705,-18.3628,0	1/1:28:0,28:0:0:28:933:-84.2685,-8.42884,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:40:0,40:0:0:40:1383:-124.763,-12.0412,0	0/1:19:10,9:10:360:9:320:-23.4219,0,-27.0247	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0104	0/1:33:23,10:23:800:10:352:-22.0842,0,-62.3772	0/1:10:7,3:7:243:3:108:-7.06487,0,-19.1972	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:14:8,6:8:275:6:203:-14.3862,0,-20.8691	1/1:66:0,66:0:0:66:2286:-205.994,-19.868,0	1/1:10:0,10:0:0:10:356:-32.3662,-3.0103,0	0/1:31:11,19:11:383:19:667:-51.1172,0,-25.561	0/1:53:28,25:28:1004:25:892:-64.6451,0,-74.7166	0/1:36:27,9:27:964:9:324:-18.6641,0,-76.2067	0/1:29:15,14:15:527:14:485:-35.2462,0,-39.0221	1/1:34:0,34:0:0:34:1131:-102.085,-10.235,0	1/1:31:0,31:0:0:31:1099:-98.8628,-9.33193,0	1/1:15:0,15:0:0:15:532:-48.2115,-4.51545,0	1/1:26:0,26:0:0:26:879:-79.4127,-7.82678,0	0/1:56:31,25:31:1112:25:870:-61.7575,0,-83.5328	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:49:1,47:1:36:47:1651:-145.278,-11.211,0	1/1:47:0,47:0:0:47:1645:-148.333,-14.1484,0	1/1:65:0,65:0:0:65:2292:-206.536,-19.567,0	0/1:61:35,26:35:1240:26:899:-62.8576,0,-93.5416	0/1:27:15,12:15:532:12:428:-30.731,0,-40.0771	1/1:34:0,34:0:0:34:1204:-108.666,-10.235,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:47:26,21:26:928:21:744:-53.1359,0,-69.6727	0/1:32:15,16:15:536:16:544:-39.5892,0,-38.7886	1/1:27:0,27:0:0:27:932:-84.1864,-8.12781,0	0/1:60:31,29:31:1097:29:1014:-73.5059,0,-80.9735	1/1:24:0,24:0:0:24:833:-75.2826,-7.22472,0	1/1:38:0,38:0:0:38:1316:-118.731,-11.4391,0	0/1:70:34,36:34:1207:36:1215:-88.5736,0,-87.8585	1/1:20:0,20:0:0:20:720:-65.1197,-6.0206,0	0/1:45:21,24:21:738:24:848:-63.0915,0,-53.1787	0/1:40:24,16:24:856:16:559:-38.5882,0,-65.2749	0/1:24:8,16:8:288:16:568:-44.2271,0,-19.038	0/1:52:22,30:22:771:30:1035:-77.8017,0,-54.0567	0/1:37:27,10:27:964:10:347:-20.4252,0,-75.934	1/1:62:0,62:0:0:62:2187:-197.092,-18.6639,0	1/1:41:0,41:0:0:41:1448:-130.614,-12.3422,0
chr05	573024	.	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chr05	578623	.	G	A	134712	PASS	AB=0.531072;ABP=35.3968;AC=143;AF=0.768817;AN=186;AO=6585;CIGAR=1X;DP=8401;DPB=8401;DPRA=0;EPP=14302.2;EPPR=3937.72;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.2202;MQMR=59.9294;NS=93;NUMALT=1;ODDS=0.0521738;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229435;QR=64656;RO=1812;RPL=6585;RPP=14302.2;RPPR=3929.04;RPR=0;RUN=1;SAF=6585;SAP=14302.2;SAR=0;SRF=1811;SRP=3929.04;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:28,20:28:1004:20:708:-49.5511,0,-76.2264	0/1:103:45,58:45:1603:58:2045:-153.088,0,-113.553	1/1:174:0,174:0:0:174:6125:-550.137,-52.3792,0	1/1:214:0,214:0:0:214:7435:-668.822,-64.4204,0	0/1:79:28,51:28:989:51:1780:-136.583,0,-65.5406	0/1:60:30,30:30:1076:30:1059:-77.5142,0,-79.0911	1/1:112:0,112:0:0:112:3850:-346.613,-33.7154,0	1/1:137:1,136:1:36:136:4678:-417.354,-37.6428,0	1/1:116:0,116:0:0:116:4022:-362.003,-34.9195,0	1/1:53:0,53:0:0:53:1860:-167.636,-15.9546,0	1/1:48:0,48:0:0:48:1678:-151.291,-14.4494,0	1/1:79:1,78:1:36:78:2703:-239.677,-20.1831,0	0/1:72:32,40:32:1144:40:1391:-103.804,0,-81.595	1/1:60:0,60:0:0:60:2094:-188.706,-18.0618,0	0/1:58:23,35:23:824:35:1214:-92.0797,0,-57.0236	1/1:54:0,54:0:0:54:1891:-170.411,-16.2556,0	1/1:25:0,25:0:0:25:863:-77.887,-7.52575,0	1/1:19:0,19:0:0:19:664:-60.079,-5.71957,0	1/1:19:0,19:0:0:19:663:-59.9796,-5.71957,0	0/1:212:107,105:107:3836:105:3660:-265.637,0,-281.618	0/1:152:76,76:76:2707:76:2643:-192.15,0,-198.117	0/1:117:67,50:67:2396:50:1729:-120.481,0,-180.542	0/1:153:73,80:73:2600:80:2796:-205.412,0,-188.162	0/1:37:4,33:4:144:33:1136:-91.4065,0,-2.17551	0/1:146:62,84:62:2228:84:2878:-213.684,0,-156.206	1/1:234:0,234:0:0:234:8192:-737.25,-70.441,0	1/1:320:0,320:0:0:320:11136:-1001.94,-96.3296,0	1/1:23:0,23:0:0:23:811:-73.2994,-6.92369,0	0/1:282:147,134:147:5256:134:4673:-335.67,0,-388.23	1/1:76:1,75:1:36:75:2610:-230.934,-19.28,0	0/1:133:51,82:51:1828:82:2863:-217.628,0,-124.764	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	1/1:26:0,26:0:0:26:924:-83.467,-7.82678,0	.:.:.:.:.:.:.:.	1/1:9:0,9:0:0:9:312:-28.4154,-2.70927,0	0/1:29:15,14:15:540:14:466:-33.5108,0,-40.2067	1/1:170:0,170:0:0:170:5955:-535.569,-51.1751,0	1/1:149:0,149:0:0:149:5155:-463.799,-44.8535,0	1/1:44:0,44:0:0:44:1531:-137.876,-13.2453,0	1/1:5:0,5:0:0:5:176:-16.1561,-1.50515,0	1/1:84:0,84:0:0:84:2895:-260.397,-25.2865,0	0/1:40:27,13:27:972:13:456:-29.332,0,-75.7563	1/1:152:0,152:0:0:152:5285:-475.643,-45.7566,0	1/1:46:0,46:0:0:46:1608:-144.964,-13.8474,0	0/1:43:25,18:25:892:18:640:-44.9674,0,-67.6539	0/1:106:29,77:29:1044:77:2664:-208.087,0,-62.3656	1/1:159:0,159:0:0:159:5595:-503.355,-47.8638,0	0/1:155:65,89:65:2304:89:3107:-233.123,0,-160.94	1/1:108:1,107:1:36:107:3737:-332.061,-28.913,0	1/1:73:0,73:0:0:73:2556:-230.292,-21.9752,0	1/1:102:1,101:1:36:101:3535:-314.703,-27.1068,0	0/1:8:1,7:1:36:7:240:-19.5264,0,-1.19003	1/1:114:0,114:0:0:114:3972:-357.537,-34.3174,0	0/1:59:26,33:26:936:33:1168:-87.6558,0,-66.7987	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:172:79,91:79:2815:91:3178:-234.62,0,-202.055	0/1:59:26,33:26:928:33:1133:-84.5049,0,-66.0775	0/1:10:2,8:2:72:8:280:-22.3358,0,-3.82642	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:69:35,34:35:1260:34:1204:-87.8869,0,-92.9344	1/1:71:0,71:0:0:71:2481:-223.411,-21.3731,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:180:86,94:86:3065:94:3310:-243.847,0,-221.891	0/1:172:90,82:90:3182:82:2879:-207.492,0,-234.826	0/1:71:35,36:35:1232:36:1257:-92.0006,0,-89.8082	0/1:142:60,82:60:2148:82:2855:-214.397,0,-150.841	1/1:206:0,206:0:0:206:7193:-646.147,-62.0122,0	1/1:144:0,144:0:0:144:5042:-453.861,-43.3483,0	1/1:20:0,20:0:0:20:689:-61.9566,-6.0206,0	1/1:51:0,51:0:0:51:1780:-160.482,-15.3525,0	0/1:31:16,15:16:563:15:520:-37.7093,0,-41.6672	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:98:0,98:0:0:98:3426:-308.024,-29.5009,0	1/1:85:0,85:0:0:85:2965:-266.82,-25.5876,0	1/1:157:0,157:0:0:157:5447:-489.998,-47.2617,0	0/1:82:39,43:39:1396:43:1470:-107.904,0,-101.255	0/1:115:58,57:58:2084:57:1985:-143.896,0,-153.176	1/1:72:0,72:0:0:72:2492:-224.512,-21.6742,0	1/1:14:0,14:0:0:14:484:-43.887,-4.21442,0	0/1:105:53,52:53:1889:52:1813:-131.824,0,-138.678	0/1:121:54,67:54:1911:67:2335:-173.796,0,-135.841	1/1:260:0,260:0:0:260:9065:-815.737,-78.2678,0	0/1:47:24,23:24:837:23:787:-56.6942,0,-61.497	1/1:68:0,68:0:0:68:2376:-214.08,-20.47,0	1/1:35:0,35:0:0:35:1215:-108.89,-10.5361,0	0/1:105:48,57:48:1711:57:1990:-147.723,0,-122.665	1/1:19:0,19:0:0:19:660:-59.7221,-5.71957,0	0/1:51:26,25:26:924:25:872:-63.4253,0,-68.1251	0/1:62:29,33:29:1040:33:1136:-83.8593,0,-75.2505	0/1:34:15,19:15:527:19:672:-50.5386,0,-37.5252	0/1:79:33,46:33:1165:46:1592:-119.587,0,-81.3736	0/1:57:36,21:36:1296:21:744:-50.1185,0,-99.7852	1/1:106:0,106:0:0:106:3634:-327.122,-31.9092,0	1/1:115:0,115:0:0:115:4019:-361.906,-34.6185,0
chr05	617494	.	C	G,A	130942	PASS	AB=0.505576,0.494052;ABP=3.73681,3.83691;AC=139,49;AF=0.739362,0.260638;AN=188;AO=4618,1841;CIGAR=1X,1X;DP=6462;DPB=6462;DPRA=1.77089,1.13152;EPP=10022.2,4000.69;EPPR=9.52472;GTI=1;LEN=1,1;MEANALT=1.52688,1.98;MQM=43.4948,42.8838;MQMR=46.3333;NS=94;NUMALT=2;ODDS=0.191648;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=161962,64537;QR=99;RO=3;RPL=1,0;RPP=10022.2,4000.69;RPPR=9.52472;RPR=4617,1841;RUN=1,1;SAF=4618,1841;SAP=10030.9,4000.69;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:28:0,16,12:0:0:16,12:564,424:-78.6906,-33.9879,-29.1714,-45.0472,0,-41.4349	1/2:75:1,36,38:1:27:36,38:1279,1337:-206.339,-104.845,-96.1292,-99.7488,0,-90.4304	1/1:59:0,59,0:0:0:59,0:2097,0:-184.012,-17.7608,0,-184.012,-17.7608,-184.012	1/1:250:0,250,0:0:0:250,0:8789,0:-772.724,-75.2575,0,-772.724,-75.2575,-772.724	1/2:31:0,9,22:0:0:9,22:324,762:-86.6263,-60.5876,-57.8783,-26.3886,0,-19.7659	1/2:23:0,5,18:0:0:5,18:180,634:-64.0124,-49.5453,-48.0402,-14.818,0,-9.39948	1/1:80:0,80,0:0:0:80,0:2819,0:-248.619,-24.0824,0,-248.619,-24.0824,-248.619	1/1:71:0,71,0:0:0:71,0:2494,0:-218.283,-21.3731,0,-218.283,-21.3731,-218.283	1/1:64:0,64,0:0:0:64,0:2243,0:-194.685,-19.2659,0,-194.685,-19.2659,-194.685	1/1:34:0,34,0:0:0:34,0:1186,0:-104.48,-10.235,0,-104.48,-10.235,-104.48	1/1:46:0,46,0:0:0:46,0:1598,0:-141.158,-13.8474,0,-141.158,-13.8474,-141.158	1/1:62:0,62,0:0:0:62,0:2127,0:-187.044,-18.6639,0,-187.044,-18.6639,-187.044	1/2:56:0,29,27:0:0:29,27:1036,964:-158.081,-75.2689,-66.539,-83.1581,0,-75.0303	1/1:61:0,61,0:0:0:61,0:2150,0:-188.793,-18.3628,0,-188.793,-18.3628,-188.793	1/2:41:0,25,16:0:0:25,16:870,564:-113.262,-44.9711,-37.4454,-68.632,0,-63.8155	1/1:46:0,46,0:0:0:46,0:1601,0:-141.202,-13.8474,0,-141.202,-13.8474,-141.202	1/1:41:0,41,0:0:0:41,0:1430,0:-126.654,-12.3422,0,-126.654,-12.3422,-126.654	1/1:65:0,65,0:0:0:65,0:2290,0:-201.489,-19.567,0,-201.489,-19.567,-201.489	1/1:34:0,34,0:0:0:34,0:1193,0:-106.053,-10.235,0,-106.053,-10.235,-106.053	1/2:106:0,42,64:0:0:42,64:1492,2254:-296.751,-178.806,-166.163,-118.289,0,-99.0233	1/2:36:0,18,18:0:0:18,18:631,629:-99.3262,-49.449,-44.0304,-50.2162,0,-44.7977	1/2:62:0,25,37:0:0:25,37:872,1301:-169.039,-102.01,-94.4846,-67.3632,0,-56.225	1/2:58:0,19,39:0:0:19,39:672,1343:-160.4,-106.79,-101.07,-53.9536,0,-42.2134	1/2:68:0,57,11:0:0:57,11:1955,381:-185.662,-30.0786,-12.9198,-155.917,0,-152.606	1/2:47:0,19,28:0:0:19,28:672,985:-132.081,-78.4834,-72.7639,-53.9435,0,-45.5146	1/1:66:0,66,0:0:0:66,0:2328,0:-201.888,-19.868,0,-201.888,-19.868,-201.888	1/1:106:0,106,0:0:0:106,0:3773,0:-331.194,-31.9092,0,-331.194,-31.9092,-331.194	1/1:24:0,24,0:0:0:24,0:844,0:-74.5152,-7.22472,0,-74.5152,-7.22472,-74.5152	1/2:277:0,117,160:0:0:117,160:4128,5633:-758.509,-438.109,-402.888,-320.738,0,-272.573	1/2:74:0,25,49:0:0:25,49:868,1706:-204.77,-135.7,-128.174,-69.4106,0,-54.6601	1/2:58:0,30,28:0:0:30,28:1041,982:-159.884,-76.431,-67.4001,-83.7916,0,-75.3628	1/2:8:0,3,5:0:0:3,5:104,180:-22.257,-14.3636,-13.4605,-8.22662,0,-6.72147	1/1:6:0,6,0:0:0:6,0:216,0:-19.064,-1.80618,0,-19.064,-1.80618,-19.064	2/2:85:0,1,84:0:0:1,84:36,2974:-259.841,-256.949,-256.647,-25.2865,-22.039,0	1/1:2:0,2,0:0:0:2,0:57,0:-4.86552,-0.60206,0,-4.86552,-0.60206,-4.86552	2/2:112:0,3,109:0:0:3,109:108,3786:-328.971,-320.708,-319.805,-32.8123,-24.2091,0	1/1:172:0,172,0:0:0:172,0:6030,0:-525.011,-51.7772,0,-525.011,-51.7772,-525.011	1/1:77:0,77,0:0:0:77,0:2741,0:-241.684,-23.1793,0,-241.684,-23.1793,-241.684	1/1:58:0,58,0:0:0:58,0:2044,0:-179.561,-17.4597,0,-179.561,-17.4597,-179.561	1/1:1:0,1,0:0:0:1,0:36,0:-3.54852,-0.30103,0,-3.54852,-0.30103,-3.54852	1/1:131:0,131,0:0:0:131,0:4509,0:-395.628,-39.4349,0,-395.628,-39.4349,-395.628	1/2:56:0,21,35:0:0:21,35:720,1218:-154.392,-96.8495,-90.5279,-57.8807,0,-47.3447	1/1:64:0,64,0:0:0:64,0:2247,0:-199.698,-19.2659,0,-199.698,-19.2659,-199.698	1/1:74:0,74,0:0:0:74,0:2610,0:-230.533,-22.2762,0,-230.533,-22.2762,-230.533	1/2:36:0,21,15:0:0:21,15:714,508:-96.607,-39.632,-33.3103,-57.304,0,-52.7885	1/2:39:0,18,21:0:0:18,21:630,752:-107.628,-58.7128,-53.2942,-49.254,0,-42.9323	1/1:46:0,46,0:0:0:46,0:1598,0:-139.739,-13.8474,0,-139.739,-13.8474,-139.739	1/2:75:0,45,30:0:0:45,30:1564,1050:-207.437,-83.8608,-70.3145,-123.917,0,-114.886	1/1:88:0,88,0:0:0:88,0:3088,0:-271.531,-26.4906,0,-271.531,-26.4906,-271.531	1/1:40:0,40,0:0:0:40,0:1409,0:-124.12,-12.0412,0,-124.12,-12.0412,-124.12	1/1:95:0,95,0:0:0:95,0:3379,0:-292.935,-28.5979,0,-292.935,-28.5979,-292.935	2/2:88:0,3,85:0:0:3,85:100,2987:-261.522,-253.51,-252.607,-25.5876,-17.245,0	1/1:81:0,80,1:0:0:80,1:2835,36:-249.957,-24.0824,0,-247.064,-20.8349,-246.763	1/2:28:0,13,15:0:0:13,15:455,518:-74.2324,-38.6897,-34.7763,-35.8709,0,-31.3554	2/2:182:0,1,181:0:0:1,181:36,6262:-551.267,-548.374,-548.073,-54.4864,-51.2389,0	1/2:55:0,34,21:0:0:34,21:1201,711:-152.344,-56.6784,-46.4434,-96.0026,0,-89.681	1/2:36:0,17,19:0:0:17,19:591,680:-100.122,-54.0858,-48.9683,-46.3768,0,-40.6572	2/2:39:0,0,39:0:0:0,39:0,1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chr05	652896	.	TCTC	CCTA,TCTT	504174	PASS	AB=0.491149,0.504099;ABP=8.73786,4.23857;AC=145,43;AF=0.771277,0.228723;AN=188;AO=14691,4290;CIGAR=1X2M1X,3M1X;DP=19098;DPB=19101;DPRA=0,1.38786;EPP=31904.1,9318.63;EPPR=13.8677;GTI=0;LEN=4,1;MEANALT=2.68085,3.08333;MQM=59.739,59.9949;MQMR=60;NS=94;NUMALT=2;ODDS=8.80842;PAIRED=0,0;PAIREDR=0;PAO=11,1;PQA=344,0;PQR=0;PRO=0;QA=506099,151230;QR=173;RO=5;RPL=6003,1777;RPP=1068.6,277.201;RPPR=6.91895;RPR=8688,2513;RUN=1,1;SAF=6003,1777;SAP=1068.6,277.201;SAR=8688,2513;SRF=1;SRP=6.91895;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:162:0,82,78:0:0:82,78:2841,2732:-453.197,-222.306,-197.621,-230.904,0,-207.424	1/2:382:0,203,178:0:0:203,178:6974,6300:-1079.44,-513.186,-452.077,-566.273,0,-512.69	1/1:434:0,430,1:0:0:430,1:14862,36:-1336.86,-129.443,0,-1333.92,-126.505,-1333.62	1/1:433:0,428,1:0:0:428,1:14785,32:-1330.06,-128.841,0,-1327.48,-126.261,-1327.18	1/2:118:0,61,57:0:0:61,57:2091,2020:-334.65,-164.914,-146.552,-170.084,0,-152.925	1/2:160:0,70,90:0:0:70,90:2389,3164:-451.737,-257.895,-236.823,-194.187,0,-167.095	1/1:266:0,260,0:0:0:260,0:8967,0:-806.338,-78.2678,0,-806.338,-78.2678,-806.338	1/1:407:0,405,1:0:0:405,1:13830,36:-1244.15,-121.917,0,-1241.21,-118.95,-1240.91	1/1:266:0,262,2:0:0:262,2:9048,72:-813.967,-78.8699,0,-808.092,-72.9652,-807.49	1/1:242:0,241,0:0:0:241,0:8304,0:-747.093,-72.5482,0,-747.093,-72.5482,-747.093	1/1:90:0,88,0:0:0:88,0:3026,0:-272.217,-26.4906,0,-272.217,-26.4906,-272.217	1/1:207:0,206,0:0:0:206,0:7135,0:-641.922,-62.0122,0,-641.922,-62.0122,-641.922	1/2:165:0,79,86:0:0:79,86:2707,3037:-467.405,-247.672,-223.891,-220.08,0,-194.191	1/1:139:0,138,0:0:0:138,0:4734,0:-425.878,-41.5421,0,-425.878,-41.5421,-425.878	1/2:153:0,78,73:0:0:78,73:2719,2585:-431.715,-210.593,-187.112,-221.143,0,-199.167	1/1:119:0,116,2:0:0:116,2:3984,72:-358.428,-34.9195,0,-352.553,-28.9714,-351.951	1/1:113:0,112,0:0:0:112,0:3864,0:-347.599,-33.7154,0,-347.599,-33.7154,-347.599	1/1:109:0,107,1:0:0:107,1:3724,36:-334.976,-32.2102,0,-332.038,-29.2603,-331.737	1/1:111:0,110,0:0:0:110,0:3801,0:-342.048,-33.1133,0,-342.048,-33.1133,-342.048	1/2:278:0,137,141:0:0:137,141:4759,4985:-792.882,-405.998,-364.757,-386.874,0,-344.429	1/2:386:0,205,180:0:0:205,180:7088,6352:-1093.19,-517.303,-455.592,-575.945,0,-521.759	1/2:159:0,52,107:0:0:52,107:1802,3732:-450.334,-303.875,-288.221,-146.807,0,-114.596	1/2:285:0,107,177:0:0:107,177:3690,6296:-812.89,-513.154,-480.944,-299.784,0,-246.501	1/1:299:0,278,20:0:0:278,20:9512,694:-855.671,-83.6863,0,-799.256,-27.1791,-793.236	1/2:212:0,123,89:0:0:123,89:4203,3106:-594.046,-252.978,-215.951,-341.414,0,-314.623	1/1:557:0,552,3:0:0:552,3:19045,100:-1713.33,-166.169,0,-1705.24,-158.068,-1704.34	1/1:368:0,365,1:0:0:365,1:12634,36:-1136.42,-109.876,0,-1133.48,-106.939,-1133.18	1/1:84:0,84,0:0:0:84,0:2894,0:-260.674,-25.2865,0,-260.674,-25.2865,-260.674	1/2:539:0,265,273:0:0:265,273:9139,9581:-1522.17,-779.79,-700.017,-742.438,0,-660.257	1/2:246:0,123,123:0:0:123,123:4255,4346:-699.918,-354.293,-317.266,-345.974,0,-308.948	1/2:288:0,147,138:0:0:147,138:5080,4848:-807.228,-394.642,-350.39,-412.641,0,-371.099	1/2:27:0,8,19:0:0:8,19:271,676:-77.4169,-55.4484,-53.0402,-22.3121,0,-16.5926	1/1:24:0,24,0:0:0:24,0:825,0:-74.5627,-7.22472,0,-74.5627,-7.22472,-74.5627	1/2:8:0,3,5:0:0:3,5:95,180:-22.6754,-15.0469,-14.1438,-7.96124,0,-6.45609	1/1:8:0,8,0:0:0:8,0:252,0:-22.9879,-2.40824,0,-22.9879,-2.40824,-22.9879	1/2:18:0,5,13:0:0:5,13:156,464:-50.7017,-38.1841,-36.679,-12.8419,0,-8.92856	1/1:413:1,410,0:1:36:410,0:14184,0:-1272.77,-120.475,0,-1273.07,-123.422,-1276	1/1:264:0,263,0:0:0:263,0:9077,0:-816.049,-79.1709,0,-816.049,-79.1709,-816.049	1/1:91:0,91,0:0:0:91,0:3136,0:-282.474,-27.3937,0,-282.474,-27.3937,-282.474	1/1:3:0,3,0:0:0:3,0:104,0:-9.70309,-0.90309,0,-9.70309,-0.90309,-9.70309	1/1:273:0,271,0:0:0:271,0:9333,0:-839.575,-81.5791,0,-839.575,-81.5791,-839.575	1/2:64:0,31,33:0:0:31,33:1075,1154:-181.609,-94.2308,-84.8988,-87.7261,0,-77.7921	1/1:333:0,331,1:0:0:331,1:11354,36:-1021.49,-99.6409,0,-1018.55,-96.661,-1018.25	1/1:189:0,187,0:0:0:187,0:6480,0:-582.985,-56.2926,0,-582.985,-56.2926,-582.985	1/2:119:0,60,59:0:0:60,59:2073,2088:-338.841,-170.43,-152.368,-168.761,0,-151.001	1/2:217:0,117,100:0:0:117,100:4006,3558:-615.069,-290.326,-255.105,-325.093,0,-294.99	1/1:256:0,255,0:0:0:255,0:8757,0:-787.776,-76.7627,0,-787.776,-76.7627,-787.776	1/2:355:0,171,184:0:0:171,184:5811,6476:-998.485,-527.228,-475.752,-471.283,0,-415.893	1/1:241:0,241,0:0:0:241,0:8266,0:-743.92,-72.5482,0,-743.92,-72.5482,-743.92	1/1:337:0,331,2:0:0:331,2:11391,68:-1024.51,-99.6409,0,-1019,-94.1226,-1018.4	1/1:264:0,261,1:0:0:261,1:8979,36:-807.749,-78.5688,0,-804.811,-75.6314,-804.51	1/2:12:0,8,4:0:0:8,4:274,144:-34.3361,-12.1095,-9.70126,-22.5806,0,-21.3765	1/1:293:0,291,0:0:0:291,0:10067,0:-905.642,-87.5997,0,-905.642,-87.5997,-905.642	1/2:125:0,55,70:0:0:55,70:1937,2462:-358.459,-200.76,-184.204,-158.05,0,-136.978	1/2:27:0,16,10:0:0:16,10:548,351:-73.0983,-28.6233,-23.8068,-44.5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chr05	652935	.	C	A	187811	PASS	AB=0.49239;ABP=5.5552;AC=143;AF=0.768817;AN=186;AO=8805;CIGAR=1X;DP=11406;DPB=11406;DPRA=0;EPP=19122.8;EPPR=5642.32;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.5563;MQMR=59.9958;NS=93;NUMALT=1;ODDS=4.26135;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=315435;QR=92725;RO=2597;RPL=8805;RPP=19122.8;RPPR=5642.32;RPR=0;RUN=1;SAF=0;SAP=19122.8;SAR=8805;SRF=0;SRP=5642.32;SRR=2597;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:28,46:28:1000:46:1652:-126.36,0,-67.7179	0/1:307:147,160:147:5215:160:5756:-425.646,0,-377.064	1/1:258:0,258:0:0:258:9264:-833.239,-77.6657,0	1/1:239:1,238:1:36:238:8487:-760.097,-68.3479,0	0/1:66:36,30:36:1296:30:1076:-77.2849,0,-97.076	0/1:110:67,43:67:2408:43:1548:-106.49,0,-183.863	1/1:138:0,138:0:0:138:4920:-442.47,-41.5421,0	1/1:288:0,288:0:0:288:10315:-928.029,-86.6966,0	1/1:137:2,135:2:72:135:4844:-428.968,-34.4044,0	1/1:155:0,155:0:0:155:5564:-500.812,-46.6597,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	1/1:92:0,92:0:0:92:3300:-297.202,-27.6948,0	0/1:79:37,42:37:1328:42:1506:-112.043,0,-96.0409	1/1:75:0,75:0:0:75:2681:-241.514,-22.5773,0	0/1:74:39,34:39:1389:34:1224:-88.1246,0,-102.972	1/1:46:2,44:2:72:44:1580:-135.609,-7.01066,0	1/1:63:0,63:0:0:63:2264:-203.975,-18.9649,0	1/1:72:0,72:0:0:72:2581:-232.423,-21.6742,0	1/1:46:0,46:0:0:46:1652:-148.957,-13.8474,0	0/1:188:109,79:109:3881:79:2840:-199.237,0,-292.891	0/1:236:102,134:102:3664:134:4806:-361.576,0,-258.919	0/1:117:86,31:86:3027:31:1112:-65.1708,0,-237.438	0/1:186:118,67:118:4217:67:2386:-158.895,0,-323.659	1/1:254:14,240:14:504:240:8576:-726.034,-30.7635,0	0/1:129:70,59:70:2493:59:2111:-151.39,0,-185.789	1/1:399:2,397:2:72:397:14187:-1269.7,-113.274,0	1/1:188:0,187:0:0:187:6708:-603.266,-56.2926,0	1/1:42:0,42:0:0:42:1490:-134.369,-12.6433,0	0/1:354:171,183:171:6108:183:6533:-481.446,0,-443.255	0/1:136:61,75:61:2192:75:2686:-200.906,0,-156.605	0/1:161:61,100:61:2162:100:3560:-271.558,0,-146.377	0/1:22:16,6:16:576:6:212:-12.8021,0,-45.5523	1/1:21:0,21:0:0:21:737:-66.6508,-6.32163,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:221:1,220:1:36:220:7900:-707.038,-62.9294,0	1/1:195:0,195:0:0:195:6983:-628.085,-58.7009,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	.:.:.:.:.:.:.:.	1/1:169:0,169:0:0:169:6045:-544.119,-50.8741,0	0/1:30:15,15:15:532:15:540:-39.9056,0,-39.1822	1/1:196:0,196:0:0:196:7004:-630.336,-59.0019,0	1/1:111:0,111:0:0:111:3984:-358.725,-33.4143,0	0/1:67:30,37:30:1072:37:1317:-98.571,0,-76.6234	0/1:113:46,67:46:1648:67:2389:-181.191,0,-114.592	1/1:165:0,165:0:0:165:5915:-532.323,-49.67,0	0/1:233:119,114:119:4219:114:4068:-296.141,0,-309.749	1/1:156:0,156:0:0:156:5596:-503.715,-46.9607,0	1/1:236:2,234:2:72:234:8400:-748.636,-64.2064,0	1/1:196:1,195:1:36:195:6997:-626.073,-55.4036,0	0/1:9:1,8:1:36:8:288:-23.5534,0,-0.889005	1/1:159:0,159:0:0:159:5699:-512.952,-47.8638,0	0/1:65:32,33:32:1133:33:1188:-87.6616,0,-82.7097	0/1:25:11,14:11:396:14:504:-38.0575,0,-28.457	0/1:105:65,40:65:2313:40:1440:-98.2446,0,-176.821	0/1:123:62,61:62:2201:61:2192:-160.508,0,-161.327	0/1:16:3,13:3:108:13:468:-37.6432,0,-5.25869	1/1:36:0,36:0:0:36:1292:-116.576,-10.8371,0	0/1:86:47,39:47:1669:39:1396:-100.043,0,-124.607	1/1:92:0,92:0:0:92:3292:-296.485,-27.6948,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:116:66,50:66:2364:50:1787:-126.103,0,-178.098	0/1:351:182,169:182:6540:169:6058:-439.558,0,-483.018	0/1:84:32,52:32:1148:52:1849:-141.383,0,-78.3433	0/1:118:64,54:64:2296:54:1923:-137.82,0,-171.38	1/1:200:0,200:0:0:200:7161:-644.502,-60.206,0	1/1:164:4,160:4:144:160:5740:-503.383,-36.0553,0	1/1:27:1,26:1:36:26:936:-80.8806,-4.52954,0	1/1:112:0,112:0:0:112:3997:-359.841,-33.7154,0	0/1:105:58,47:58:2058:47:1692:-120.945,0,-153.879	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:106:0,106:0:0:106:3812:-343.223,-31.9092,0	1/1:150:0,150:0:0:150:5366:-482.928,-45.1545,0	1/1:194:0,194:0:0:194:6964:-626.636,-58.3998,0	0/1:150:95,55:95:3408:55:1969:-132.324,0,-261.779	0/1:124:49,75:49:1741:75:2689:-204.845,0,-119.645	1/1:154:0,154:0:0:154:5536:-498.276,-46.3586,0	1/1:20:0,20:0:0:20:716:-64.6978,-6.0206,0	0/1:162:74,88:74:2660:88:3156:-235.353,0,-190.878	0/1:144:56,88:56:2016:88:3154:-240.564,0,-138.365	1/1:205:1,204:1:36:204:7304:-653.646,-58.1129,0	0/1:92:38,54:38:1368:54:1944:-147.534,0,-95.7261	1/1:72:0,72:0:0:72:2584:-232.795,-21.6742,0	1/1:110:0,110:0:0:110:3955:-355.852,-33.1133,0	0/1:189:101,88:101:3609:88:3155:-227.268,0,-268.12	1/1:36:0,36:0:0:36:1288:-116.214,-10.8371,0	0/1:75:37,38:37:1328:38:1368:-100.835,0,-97.245	0/1:64:36,28:36:1278:28:1008:-70.9441,0,-96.0557	1/1:28:0,28:0:0:28:1008:-90.8972,-8.42884,0	0/1:63:30,33:30:1058:33:1184:-87.8198,0,-76.5647	0/1:96:59,37:59:2094:37:1332:-91.2386,0,-159.827	1/1:70:1,69:1:36:69:2453:-217.409,-17.4738,0	1/1:130:0,130:0:0:130:4676:-420.316,-39.1339,0
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chr05	685344	.	C	T	134795	PASS	AB=0.493771;ABP=4.33593;AC=143;AF=0.760638;AN=188;AO=6466;CIGAR=1X;DP=8468;DPB=8468;DPRA=22.7527;EPP=14043.8;EPPR=4343.78;GTI=2;LEN=1;MEANALT=1.03226;MQM=58.8979;MQMR=59.8704;NS=94;NUMALT=1;ODDS=0.926298;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228797;QR=69090;RO=1999;RPL=6466;RPP=14043.8;RPPR=4343.78;RPR=0;RUN=1;SAF=6466;SAP=14043.8;SAR=0;SRF=1999;SRP=4343.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:11,12:11:379:12:432:-32.2971,0,-27.5169	0/1:195:104,90:104:3587:90:3192:-228.393,0,-264.225	1/1:102:0,102:0:0:102:3628:-326.475,-30.7051,0	1/1:189:1,188:1:32:188:6625:-592.605,-53.6954,0	0/1:79:45,34:45:1568:34:1224:-86.676,0,-117.435	0/1:66:34,32:34:1190:32:1130:-81.245,0,-87.102	1/1:105:0,105:0:0:105:3742:-336.719,-31.6082,0	1/1:142:0,142:0:0:142:5020:-451.446,-42.7463,0	0/1:75:45,30:45:1520:30:1061:-71.9709,0,-114.505	1/1:107:0,107:0:0:107:3787:-340.919,-32.2102,0	1/1:41:0,41:0:0:41:1432:-129.162,-12.3422,0	1/1:50:0,50:0:0:50:1741:-156.806,-15.0515,0	0/1:37:19,18:19:667:18:628:-45.702,0,-49.2142	1/1:58:0,58:0:0:58:2041:-183.922,-17.4597,0	0/1:23:17,6:17:588:6:216:-12.8529,0,-46.3213	1/1:40:0,40:0:0:40:1388:-125.097,-12.0412,0	1/1:41:0,41:0:0:41:1433:-129.181,-12.3422,0	1/1:33:0,33:0:0:33:1163:-104.962,-9.93399,0	1/1:28:0,28:0:0:28:999:-89.8292,-8.42884,0	0/1:238:112,126:112:3961:126:4495:-332.685,0,-285.034	0/1:129:62,67:62:2184:67:2356:-173.397,0,-157.971	0/1:117:77,40:77:2637:40:1408:-91.7963,0,-202.341	0/1:30:19,11:19:671:11:392:-26.3661,0,-51.6849	1/1:107:1,106:1:36:106:3732:-331.709,-28.6119,0	0/1:41:23,18:23:809:18:644:-45.7539,0,-60.7861	1/1:320:0,320:0:0:320:11351:-1018.9,-96.3296,0	1/1:233:1,232:1:32:232:8235:-736.201,-66.9407,0	1/1:28:0,28:0:0:28:966:-85.8393,-8.42884,0	0/1:238:100,138:100:3469:138:4937:-372.68,0,-240.782	0/1:159:77,82:77:2679:82:2920:-215.078,0,-193.488	0/1:135:61,74:61:2067:74:2601:-193.294,0,-145.656	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	1/1:7:0,7:0:0:7:237:-21.6403,-2.10721,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:8:4,4:4:144:4:144:-10.9046,0,-10.9054	1/1:120:0,120:0:0:120:4230:-380.374,-36.1236,0	1/1:238:0,238:0:0:238:8463:-760.896,-71.6451,0	1/1:44:0,44:0:0:44:1546:-139.402,-13.2453,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:147:0,147:0:0:147:5238:-471.188,-44.2514,0	0/1:23:13,10:13:438:10:352:-24.8981,0,-32.8176	1/1:147:0,147:0:0:147:5157:-464.026,-44.2514,0	1/1:42:0,42:0:0:42:1496:-134.9,-12.6433,0	0/1:30:13,16:13:421:16:568:-42.5129,0,-29.2636	0/1:105:48,57:48:1615:57:2035:-151.571,0,-114.021	1/1:113:0,113:0:0:113:3987:-358.344,-34.0164,0	0/1:211:113,98:113:3888:98:3451:-247.07,0,-286.605	1/1:118:0,118:0:0:118:4185:-376.571,-35.5215,0	1/1:128:0,128:0:0:128:4541:-408.596,-38.5318,0	1/1:175:0,175:0:0:175:6260:-563.073,-52.6803,0	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	1/1:169:0,169:0:0:169:5999:-539.753,-50.8741,0	0/1:110:57,53:57:1989:53:1875:-135.655,0,-146.169	0/1:17:8,9:8:275:9:324:-24.3305,0,-19.966	0/1:106:39,67:39:1358:67:2388:-182.798,0,-90.6075	0/1:19:10,9:10:333:9:320:-23.4228,0,-24.5721	0/1:8:1,7:1:36:7:252:-20.6203,0,-1.19003	1/1:25:0,25:0:0:25:877:-79.2096,-7.52575,0	0/1:105:44,61:44:1539:61:2130:-159.995,0,-107.19	1/1:120:2,118:2:68:118:4108:-362.817,-29.6659,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:199:98,101:98:3379:101:3524:-257.094,0,-244.423	0/1:148:78,70:78:2719:70:2516:-181.917,0,-200.402	0/1:104:64,40:64:2243:40:1421:-96.6653,0,-170.811	0/1:104:53,51:53:1841:51:1780:-128.488,0,-134.658	1/1:143:0,143:0:0:143:5072:-456.366,-43.0473,0	1/1:211:1,210:1:32:210:7412:-663.453,-60.318,0	1/1:26:0,26:0:0:26:925:-83.5037,-7.82678,0	1/1:77:0,77:0:0:77:2739:-246.121,-23.1793,0	0/1:72:35,37:35:1179:37:1312:-96.5008,0,-84.7274	1/1:26:0,26:0:0:26:914:-82.5394,-7.82678,0	1/1:105:0,105:0:0:105:3715:-333.876,-31.6082,0	1/1:61:0,61:0:0:61:2160:-194.565,-18.3628,0	1/1:107:0,107:0:0:107:3836:-345.304,-32.2102,0	0/1:154:89,65:89:3085:65:2319:-162.216,0,-231.522	0/1:143:58,85:58:1961:85:2985:-225.628,0,-133.712	1/1:64:0,64:0:0:64:2292:-206.489,-19.2659,0	1/1:3:0,3:0:0:3:104:-9.70184,-0.90309,0	0/1:133:62,71:62:2111:71:2520:-186.921,0,-150.174	0/1:129:62,66:62:2113:66:2332:-170.137,0,-151.541	1/1:173:0,173:0:0:173:6050:-544.173,-52.0782,0	0/1:75:45,30:45:1559:30:1056:-72.685,0,-118.023	1/1:46:0,46:0:0:46:1618:-145.894,-13.8474,0	1/1:36:1,35:1:32:35:1204:-105.442,-7.6439,0	0/1:98:55,43:55:1919:43:1519:-107.261,0,-143.48	1/1:25:0,25:0:0:25:884:-79.8782,-7.52575,0	0/1:44:21,23:21:714:23:816:-60.4788,0,-51.3303	0/1:58:26,32:26:903:32:1148:-86.0678,0,-64.124	1/1:27:0,27:0:0:27:938:-84.3357,-8.12781,0	0/1:82:44,38:44:1531:38:1338:-96.029,0,-113.365	0/1:48:34,14:34:1166:14:483:-29.3461,0,-90.7926	1/1:118:0,118:0:0:118:4214:-378.444,-35.5215,0	1/1:48:0,48:0:0:48:1677:-151.167,-14.4494,0
chr05	688666	.	C	T	104315	PASS	AB=0.484463;ABP=8.94811;AC=144;AF=0.765957;AN=188;AO=4889;CIGAR=1X;DP=6360;DPB=6360;DPRA=68.3763;EPP=10602;EPPR=3179.88;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.9838;MQMR=59.9993;NS=94;NUMALT=1;ODDS=2.62136;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174985;QR=52391;RO=1467;RPL=4887;RPP=10602;RPPR=3179.88;RPR=2;RUN=1;SAF=4889;SAP=10619.3;SAR=0;SRF=1467;SRP=3188.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:19,11:19:667:11:396:-26.9518,0,-51.3237	0/1:46:23,22:23:824:22:792:-57.8428,0,-60.7208	1/1:141:0,141:0:0:141:5043:-454.011,-42.4452,0	1/1:213:1,212:1:36:212:7580:-678.634,-60.5211,0	0/1:42:11,31:11:396:31:1111:-87.6579,0,-23.3395	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	1/1:53:0,53:0:0:53:1887:-170.107,-15.9546,0	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	0/1:55:31,24:31:1103:24:856:-60.8045,0,-83.0232	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:36:0,36:0:0:36:1277:-115.231,-10.8371,0	1/1:102:0,102:0:0:102:3642:-327.984,-30.7051,0	0/1:58:27,31:27:949:31:1116:-83.2886,0,-68.263	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:62:33,29:33:1179:29:1040:-75.2505,0,-87.7534	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:31:0,31:0:0:31:1100:-99.2908,-9.33193,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:154:79,75:79:2817:75:2685:-195.534,0,-207.409	0/1:129:54,75:54:1940:75:2682:-202.791,0,-136.043	0/1:91:63,28:63:2239:28:1008:-63.6426,0,-174.38	0/1:64:42,22:42:1508:22:792:-52.3398,0,-116.749	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:108:60,47:60:2152:47:1680:-118.917,0,-161.377	1/1:112:0,112:0:0:112:4007:-360.819,-33.7154,0	1/1:230:1,229:1:36:229:8209:-735.223,-65.6386,0	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	0/1:198:102,96:102:3660:96:3447:-250.837,0,-269.999	0/1:46:28,18:28:996:18:644:-44.4432,0,-76.1075	0/1:51:30,21:30:1052:21:756:-53.0147,0,-79.6352	0/1:8:4,4:4:129:4:140:-10.5363,0,-9.51942	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:1:0,1:0:0:1:21:-2.09995,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	1/1:174:1,172:1:36:172:6180:-552.771,-48.7648,0	1/1:112:0,112:0:0:112:4020:-361.988,-33.7154,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	0/1:26:8,18:8:288:18:632:-49.3777,0,-18.4406	1/1:163:1,162:1:36:162:5789:-517.525,-45.4696,0	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	0/1:61:31,30:31:1103:30:1080:-79.1504,0,-81.217	0/1:91:50,40:50:1783:40:1432:-101.725,0,-133.3	1/1:107:1,106:1:36:106:3800:-338.592,-28.6119,0	0/1:82:41,41:41:1460:41:1472:-108.092,0,-107.012	1/1:80:0,80:0:0:80:2860:-257.638,-24.0824,0	1/1:62:0,62:0:0:62:2212:-199.343,-18.6639,0	1/1:68:1,67:1:36:67:2408:-213.378,-16.8718,0	0/1:15:10,5:10:360:5:176:-11.6696,0,-28.2289	1/1:128:0,128:0:0:128:4595:-413.713,-38.5318,0	0/1:29:12,17:12:432:17:608:-46.3222,0,-30.4913	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:105:52,53:52:1848:53:1892:-138.95,0,-134.992	0/1:37:10,27:10:351:27:972:-76.6598,0,-20.7886	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:47:23,24:23:824:24:864:-63.9342,0,-60.3349	1/1:74:0,74:0:0:74:2647:-238.476,-22.2762,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:136:77,59:77:2760:59:2124:-150.488,0,-207.701	0/1:128:63,65:63:2240:65:2305:-169.169,0,-163.332	0/1:45:23,22:23:813:22:792:-58.0593,0,-59.9428	0/1:68:34,34:34:1216:34:1220:-89.6368,0,-89.2765	1/1:115:0,115:0:0:115:4124:-371.344,-34.6185,0	1/1:70:1,69:1:36:69:2453:-217.425,-17.4738,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:73:0,73:0:0:73:2623:-236.317,-21.9752,0	0/1:39:26,13:26:932:13:468:-30.7195,0,-72.4587	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:92:0,92:0:0:92:3291:-296.409,-27.6948,0	1/1:67:0,67:0:0:67:2389:-215.266,-20.169,0	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	0/1:113:54,59:54:1944:59:2107:-155.882,0,-141.22	0/1:75:35,40:35:1256:40:1427:-106.15,0,-90.768	1/1:47:1,46:1:36:46:1638:-144.109,-10.5501,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:80:34,46:34:1220:46:1643:-124.075,0,-86.0244	0/1:42:21,21:21:747:21:743:-54.5501,0,-54.911	1/1:217:0,217:0:0:217:7751:-697.62,-65.3235,0	0/1:55:22,33:22:780:33:1184:-90.3117,0,-53.9664	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:107:65,42:65:2336:42:1499:-102.994,0,-178.289	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:71:36,35:36:1292:35:1245:-90.9796,0,-95.2106	0/1:67:33,34:33:1188:34:1216:-89.5776,0,-87.0596	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:61:28,33:28:1000:33:1176:-87.7849,0,-71.9524	0/1:74:47,27:47:1671:27:959:-64.3492,0,-128.4	1/1:69:1,68:1:36:68:2421:-214.547,-17.1728,0	1/1:110:0,110:0:0:110:3952:-355.87,-33.1133,0
chr05	694129	.	C	A	30047	PASS	AB=0.45127;ABP=88.2985;AC=43;AF=0.231183;AN=186;AO=1869;CIGAR=1X;DP=9169;DPB=9169;DPRA=0.965181;EPP=4061.49;EPPR=15846.1;GTI=2;LEN=1;MEANALT=1.06522;MQM=59.8951;MQMR=59.9871;NS=93;NUMALT=1;ODDS=2.31251;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66649;QR=260252;RO=7296;RPL=1869;RPP=4061.49;RPPR=15846.1;RPR=0;RUN=1;SAF=0;SAP=4061.49;SAR=1869;SRF=0;SRP=15846.1;SRR=7296;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:27,25:27:957:25:884:-64.2248,0,-70.7903	0/1:80:46,34:46:1626:34:1220:-86.0211,0,-122.543	0/0:203:203,0:203:7261:0:0:0,-61.1091,-653.541	0/0:257:257,0:257:9168:0:0:0,-77.3647,-825.085	0/1:18:14,4:14:504:4:140:-7.52604,0,-40.2796	0/1:62:36,26:36:1288:26:928:-65.1744,0,-97.5597	0/0:75:75,0:75:2681:0:0:0,-22.5772,-241.533	0/0:225:225,0:225:7986:0:0:0,-67.7317,-718.76	0/1:132:84,48:84:3016:48:1716:-114.979,0,-231.934	0/0:81:81,0:81:2889:0:0:0,-24.3834,-260.245	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.126	0/1:41:22,19:22:792:19:684:-49.5374,0,-59.2634	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/1:30:19,11:19:680:11:392:-26.5892,0,-52.4983	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:116:64,52:64:2281:52:1860:-132.76,0,-170.631	0/1:146:77,69:77:2757:69:2441:-175.994,0,-204.419	0/1:134:58,76:58:2027:76:2715:-204.244,0,-142.36	0/1:120:66,54:66:2364:54:1920:-136.925,0,-176.89	0/1:74:65,9:65:2305:9:316:-6.50264,0,-185.433	0/1:120:58,62:58:2084:62:2224:-164.301,0,-151.706	0/0:331:331,0:331:11778:0:0:0,-99.6409,-1059.88	0/0:147:147,0:147:5257:0:0:0,-44.2514,-473.265	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:315:153,161:153:5500:161:5752:-423.063,0,-400.389	0/1:157:82,74:82:2918:74:2623:-189.131,0,-215.68	0/1:154:81,73:81:2889:73:2608:-188.596,0,-213.886	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:2,5:2:72:5:172:-13.7108,0,-4.72951	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:125:125,0:125:4492:0:0:0,-37.6287,-404.447	0/0:226:226,0:226:8039:0:0:0,-68.0328,-723.529	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:154:154,0:154:5479:0:0:0,-46.3586,-493.236	0/1:18:3,15:3:104:15:536:-43.1563,0,-4.28427	0/0:212:212,0:212:7551:0:0:0,-63.8184,-679.63	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:33:19,14:19:680:14:500:-35.4022,0,-51.5727	0/1:147:81,66:81:2870:66:2364:-168.767,0,-214.284	0/0:200:200,0:200:7154:0:0:0,-60.206,-643.914	0/1:243:120,123:120:4277:123:4399:-322.932,0,-311.953	0/0:142:142,0:142:5085:0:0:0,-42.7463,-457.792	0/0:171:171,0:171:6083:0:0:0,-51.4761,-547.571	0/0:96:96,0:96:3410:0:0:0,-28.8989,-307.113	.:.:.:.:.:.:.:.	0/0:185:185,0:185:6625:0:0:0,-55.6905,-596.305	0/1:72:46,26:46:1629:26:936:-62.8853,0,-125.223	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:156:80,76:80:2842:76:2704:-196.644,0,-209.055	0/1:49:22,27:22:788:27:964:-72.305,0,-56.4943	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:113:58,55:58:2057:55:1964:-142.998,0,-151.383	0/0:80:79,1:79:2836:1:36:0,-20.4841,-251.88	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:185:111,74:111:3969:74:2652:-183.236,0,-301.709	0/1:179:118,60:118:4221:60:2128:-137.982,0,-326.274	0/1:74:33,41:33:1169:41:1460:-109.42,0,-83.2391	0/1:102:57,45:57:2006:45:1608:-114.305,0,-150.105	0/0:227:227,0:227:8058:0:0:0,-68.3338,-725.237	0/0:134:133,1:133:4738:1:32:0,-37.1387,-423.377	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:35:16,19:16:568:19:676:-50.6319,0,-40.9158	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:228:228,0:228:8067:0:0:0,-68.6348,-726.043	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:370:369,0:369:13134:0:0:0,-111.08,-1181.66	0/1:112:63,49:63:2264:49:1735:-122.708,0,-170.307	0/1:245:143,102:143:5140:102:3648:-254.535,0,-388.987	0/0:105:104,1:104:3736:1:36:0,-28.0099,-332.841	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:129:71,58:71:2521:58:2065:-147.286,0,-188.308	0/1:152:92,60:92:3266:60:2137:-146.836,0,-248.402	0/0:184:184,0:184:6570:0:0:0,-55.3895,-591.38	0/1:37:20,17:20:720:17:608:-43.9139,0,-53.9907	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:75:40,35:40:1425:35:1240:-89.3272,0,-105.968	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:66:42,24:42:1508:24:847:-56.6807,0,-116.147	0/1:52:29,23:29:1040:23:816:-58.1048,0,-78.2608	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:57:27,30:27:968:30:1076:-79.9941,0,-70.2787	0/1:24:9,15:9:324:15:527:-40.5248,0,-22.2811	0/0:149:149,0:149:5307:0:0:0,-44.8535,-477.762	0/0:56:56,0:56:1997:0:0:0,-16.8577,-180.002
chr05	696001	.	G	C	151054	PASS	AB=0.521526;ABP=19.4642;AC=144;AF=0.765957;AN=188;AO=7290;CIGAR=1X;DP=9258;DPB=9258;DPRA=0;EPP=15824.4;EPPR=4261.27;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.7738;MQMR=60;NS=94;NUMALT=1;ODDS=3.95107;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255399;QR=68391;RO=1961;RPL=1;RPP=15824.4;RPPR=4261.27;RPR=7289;RUN=1;SAF=0;SAP=15833;SAR=7290;SRF=0;SRP=4261.27;SRR=1961;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:14,31:14:500:31:1108:-86.4712,0,-31.7898	0/1:157:78,79:78:2721:79:2749:-200.079,0,-197.871	1/1:145:0,145:0:0:145:5088:-458.058,-43.6494,0	1/1:218:0,218:0:0:218:7643:-687.46,-65.6245,0	0/1:45:23,22:23:797:22:756:-54.7861,0,-58.4996	0/1:72:34,38:34:1169:38:1298:-95.4312,0,-83.8348	1/1:125:0,125:0:0:125:4365:-392.923,-37.6288,0	1/1:170:0,170:0:0:170:5990:-539.159,-51.1751,0	0/1:38:21,17:21:739:17:597:-42.6136,0,-55.3932	1/1:101:0,101:0:0:101:3541:-318.9,-30.404,0	1/1:76:0,76:0:0:76:2631:-237.036,-22.8783,0	1/1:48:0,48:0:0:48:1640:-147.883,-14.4494,0	0/1:43:24,19:24:799:19:676:-48.2237,0,-59.2729	1/1:141:0,141:0:0:141:4950:-445.652,-42.4452,0	0/1:47:20,27:20:712:27:951:-71.7557,0,-50.2582	1/1:33:0,33:0:0:33:1154:-104.09,-9.93399,0	1/1:109:0,109:0:0:109:3786:-340.922,-32.8123,0	1/1:55:0,54:0:0:54:1887:-169.728,-16.2556,0	1/1:28:0,28:0:0:28:984:-88.8721,-8.42884,0	0/1:253:143,110:143:5009:110:3877:-272.844,0,-374.797	0/1:83:47,36:47:1611:36:1259:-88.6095,0,-120.287	0/1:159:112,47:112:3900:47:1662:-102.002,0,-303.328	0/1:8:5,3:5:171:3:95:-6.45597,0,-13.3172	1/1:106:4,102:4:144:102:3585:-309.545,-18.5956,0	0/1:68:17,51:17:571:51:1794:-141.266,0,-31.2354	1/1:332:0,332:0:0:332:11635:-1047.01,-99.942,0	1/1:187:1,186:1:36:186:6503:-581.763,-52.6943,0	1/1:23:0,23:0:0:23:801:-72.3353,-6.92369,0	0/1:235:115,120:115:4049:120:4174:-305.1,0,-293.857	0/1:268:116,151:116:4062:151:5278:-394.428,0,-285.035	0/1:83:31,51:31:1068:51:1802:-137.415,0,-71.3807	0/1:3:1,2:1:36:2:63:-5.08006,0,-2.69518	1/1:17:1,16:1:36:16:572:-48.2152,-1.51924,0	0/1:16:8,8:8:275:8:280:-20.7194,0,-20.267	1/1:5:0,5:0:0:5:156:-14.347,-1.50515,0	0/1:12:6,6:6:212:6:212:-15.8124,0,-15.8124	1/1:178:0,178:0:0:178:6238:-561.524,-53.5833,0	1/1:287:0,287:0:0:287:10135:-911.975,-86.3956,0	1/1:59:0,59:0:0:59:1984:-178.818,-17.7608,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:176:0,176:0:0:176:6181:-556.397,-52.9813,0	0/1:31:10,21:10:356:21:734:-57.0145,0,-23.0493	1/1:130:0,130:0:0:130:4544:-409.035,-39.1339,0	1/1:35:0,35:0:0:35:1196:-107.899,-10.5361,0	0/1:52:24,28:24:819:28:948:-69.9725,0,-58.3673	0/1:55:20,35:20:701:35:1223:-93.8104,0,-46.8551	1/1:121:0,121:0:0:121:4252:-382.735,-36.4246,0	0/1:208:84,124:84:2931:124:4316:-325.997,0,-201.41	1/1:119:0,119:0:0:119:4172:-375.665,-35.8226,0	1/1:230:0,230:0:0:230:8086:-727.767,-69.2369,0	1/1:174:0,173:0:0:173:6064:-545.438,-52.0782,0	0/1:24:8,16:8:284:16:557:-43.2308,0,-18.6786	1/1:169:0,169:0:0:169:5894:-530.561,-50.8741,0	0/1:57:27,30:27:927:30:1047:-77.3792,0,-66.5796	0/1:31:16,15:16:572:15:532:-38.8778,0,-42.4815	0/1:136:76,60:76:2679:60:2077:-146.254,0,-200.414	0/1:15:5,10:5:152:10:356:-27.8654,0,-9.46449	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	1/1:24:0,24:0:0:24:837:-75.6172,-7.22472,0	0/1:97:44,53:44:1540:53:1879:-140.187,0,-109.689	1/1:168:0,168:0:0:168:5845:-526.167,-50.573,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:170:84,86:84:2954:86:3020:-220.853,0,-214.916	0/1:217:90,127:90:3187:127:4485:-338.453,0,-221.732	0/1:108:43,65:43:1477:65:2315:-176.097,0,-100.707	0/1:69:29,40:29:1032:40:1408:-106.233,0,-72.4224	1/1:124:0,124:0:0:124:4357:-392.302,-37.3277,0	1/1:104:1,103:1:36:103:3636:-323.847,-27.7088,0	1/1:34:0,34:0:0:34:1185:-106.952,-10.235,0	1/1:82:0,82:0:0:82:2900:-261.229,-24.6845,0	0/1:115:56,59:56:1945:59:2062:-151.229,0,-140.703	1/1:45:0,45:0:0:45:1599:-144.199,-13.5464,0	1/1:135:0,135:0:0:135:4744:-426.215,-40.6391,0	1/1:57:0,56:0:0:56:1977:-177.983,-16.8577,0	1/1:116:0,116:0:0:116:4079:-367.285,-34.9195,0	0/1:136:68,68:68:2356:68:2378:-173.335,0,-171.354	0/1:179:62,117:62:2173:117:4166:-321.137,0,-141.948	1/1:136:1,135:1:36:135:4761:-425.041,-37.3418,0	1/1:30:0,30:0:0:30:1044:-94.2598,-9.0309,0	0/1:79:40,39:40:1413:39:1366:-99.4564,0,-103.684	0/1:95:45,50:45:1576:50:1761:-130.162,0,-113.53	1/1:171:0,171:0:0:171:6003:-540.379,-51.4761,0	0/1:104:43,61:43:1511:61:2116:-159.4,0,-104.975	1/1:71:0,70:0:0:70:2459:-221.206,-21.0721,0	1/1:48:0,48:0:0:48:1639:-147.791,-14.4494,0	0/1:94:58,36:58:2018:36:1239:-83.5095,0,-153.593	1/1:26:0,26:0:0:26:904:-81.6719,-7.82678,0	0/1:77:37,40:37:1271:40:1405:-103.565,0,-91.5074	0/1:53:28,25:28:957:25:879:-63.4537,0,-70.4807	1/1:66:0,66:0:0:66:2272:-204.707,-19.868,0	0/1:175:86,88:86:2959:88:3080:-224.66,0,-213.847	0/1:57:45,12:45:1556:12:406:-19.7054,0,-123.167	1/1:67:0,67:0:0:67:2365:-213.106,-20.169,0	1/1:59:0,59:0:0:59:2074:-186.929,-17.7608,0
chr05	696023	.	CTG	TTT,TTG	208732	PASS	AB=0.528012,0.471508;ABP=31.3554,32.3369;AC=144,44;AF=0.765957,0.234043;AN=188;AO=7535,1969;CIGAR=1X1M1X,1X2M;DP=9511;DPB=9511;DPRA=0,0.9059;EPP=15584.2,4055.79;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.58511,2.02041;MQM=59.7246,59.9904;MQMR=60;NS=94;NUMALT=2;ODDS=5.41305;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=265436,70671;QR=36;RO=1;RPL=91,26;RPP=15584.2,4055.79;RPPR=5.18177;RPR=7444,1943;RUN=1,1;SAF=0,0;SAP=16365.1,4278.64;SAR=7535,1969;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,32,14:0:0:32,14:1113,504:-131.957,-41.4837,-31.8507,-90.8295,0,-86.6151	1/2:164:0,82,82:0:0:82,82:2874,2944:-473.835,-240.506,-215.821,-233.683,0,-208.999	1/1:150:0,150,0:0:0:150,0:5250,0:-472.623,-45.1545,0,-472.623,-45.1545,-472.623	1/1:226:0,226,0:0:0:226,0:7924,0:-712.528,-68.0328,0,-712.528,-68.0328,-712.528	1/2:44:0,22,22:0:0:22,22:783,792:-128.784,-64.983,-58.3604,-64.1584,0,-57.5358	1/2:72:0,38,34:0:0:38,34:1340,1216:-208.609,-99.5115,-88.0724,-109.453,0,-99.2176	1/1:134:0,134,0:0:0:134,0:4693,0:-422.443,-40.338,0,-422.443,-40.338,-422.443	1/1:176:0,176,0:0:0:176,0:6233,0:-560.961,-52.9813,0,-560.961,-52.9813,-560.961	1/2:39:0,19,20:0:0:19,20:664,720:-113.114,-59.1082,-53.3886,-54.3607,0,-48.3401	1/1:106:0,105,0:0:0:105,0:3615,0:-325.195,-31.6082,0,-325.195,-31.6082,-325.195	1/1:76:0,76,0:0:0:76,0:2703,0:-243.515,-22.8783,0,-243.515,-22.8783,-243.515	1/1:51:0,50,0:0:0:50,0:1772,0:-159.399,-15.0515,0,-159.399,-15.0515,-159.399	1/2:45:0,21,24:0:0:21,24:737,864:-130.832,-70.8578,-64.5362,-60.3293,0,-53.1046	1/1:146:0,145,0:0:0:145,0:5165,0:-464.612,-43.6494,0,-464.612,-43.6494,-464.612	1/2:47:0,27,20:0:0:27,20:954,715:-136.348,-58.6567,-50.5289,-78.0469,0,-72.0263	1/1:34:0,34,0:0:0:34,0:1210,0:-109.133,-10.235,0,-109.133,-10.235,-109.133	1/1:111:0,111,0:0:0:111,0:3929,0:-353.786,-33.4143,0,-353.786,-33.4143,-353.786	1/1:57:0,57,0:0:0:57,0:2021,0:-182.138,-17.1587,0,-182.138,-17.1587,-182.138	1/1:30:0,30,0:0:0:30,0:1052,0:-94.9288,-9.0309,0,-94.9288,-9.0309,-94.9288	1/2:258:0,113,145:0:0:113,145:3980,5189:-747.445,-423.498,-389.482,-324.301,0,-280.651	1/2:84:0,36,48:0:0:36,48:1279,1708:-243.699,-139.556,-128.719,-104.498,0,-90.0488	1/2:161:0,48,113:0:0:48,113:1705,4058:-470.32,-331.389,-316.94,-139.287,0,-105.271	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/1:108:0,104,4:0:0:104,4:3645,144:-327.896,-31.3071,0,-316.146,-19.1976,-314.942	1/2:71:0,54,17:0:0:54,17:1880,612:-203.153,-50.2959,-34.0403,-153.214,0,-148.097	1/1:335:0,334,0:0:0:334,0:11785,0:-1060.15,-100.544,0,-1060.15,-100.544,-1060.15	1/1:192:0,191,1:0:0:191,1:6673,36:-600.286,-57.4967,0,-597.349,-54.1995,-597.048	1/1:22:0,22,0:0:0:22,0:782,0:-70.6316,-6.62266,0,-70.6316,-6.62266,-70.6316	1/2:243:0,127,116:0:0:127,116:4456,4164:-702.625,-340.022,-301.791,-362.958,0,-328.038	1/2:274:0,154,120:0:0:154,120:5435,4312:-794.692,-352.131,-305.773,-442.917,0,-406.794	1/2:83:0,50,33:0:0:50,33:1783,1188:-242.638,-97.2946,-82.2431,-145.701,0,-135.767	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:17:0,16,1:0:0:16,1:576,36:-51.8152,-4.81648,0,-48.8777,-1.51924,-48.5767	1/2:16:0,8,8:0:0:8,8:286,288:-47.1745,-23.8592,-21.4509,-23.6739,0,-21.2656	1/1:5:0,5,0:0:0:5,0:173,0:-15.9093,-1.50515,0,-15.9093,-1.50515,-15.9093	1/2:12:0,6,6:0:0:6,6:208,216:-34.8835,-17.9843,-16.1782,-17.2523,0,-15.4461	1/1:183:0,183,0:0:0:183,0:6528,0:-587.606,-55.0885,0,-587.606,-55.0885,-587.606	1/1:296:0,295,0:0:0:295,0:10376,0:-933.296,-88.8039,0,-933.296,-88.8039,-933.296	1/1:63:0,63,0:0:0:63,0:2227,0:-200.613,-18.9649,0,-200.613,-18.9649,-200.613	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:181:0,181,0:0:0:181,0:6352,0:-571.778,-54.4864,0,-571.778,-54.4864,-571.778	1/2:31:0,21,10:0:0:21,10:745,360:-90.3581,-29.734,-23.4124,-60.9821,0,-57.9718	1/1:138:0,138,0:0:0:138,0:4805,0:-432.441,-41.5421,0,-432.441,-41.5421,-432.441	1/1:37:0,37,0:0:0:37,0:1324,0:-119.338,-11.1381,0,-119.338,-11.1381,-119.338	1/2:51:1,27,23:1:36:27,23:962,828:-142.732,-64.6232,-59.4328,-75.4704,0,-71.4842	1/2:57:0,37,20:0:0:37,20:1296,720:-164.524,-59.1082,-47.9701,-105.772,0,-99.7514	1/1:127:0,127,0:0:0:127,0:4479,0:-403.195,-38.2308,0,-403.195,-38.2308,-403.195	1/2:213:0,129,83:0:0:129,83:4533,2988:-612.74,-243.806,-204.973,-368.931,0,-343.946	1/1:124:0,124,0:0:0:124,0:4360,0:-392.579,-37.3277,0,-392.579,-37.3277,-392.579	1/1:240:0,240,0:0:0:240,0:8394,0:-755.481,-72.2472,0,-755.481,-72.2472,-755.481	1/1:177:0,177,0:0:0:177,0:6212,0:-558.818,-53.2823,0,-558.818,-53.2823,-558.818	1/2:24:0,16,8:0:0:16,8:568,288:-70.1368,-23.8592,-19.0427,-46.6358,0,-44.2276	1/1:177:0,177,0:0:0:177,0:6215,0:-559.42,-53.2823,0,-559.42,-53.2823,-559.42	1/2:57:0,31,26:0:0:31,26:1061,928:-162.122,-76.0115,-66.6795,-86.4605,0,-78.6337	1/2:31:0,15,16:0:0:15,16:538,576:-91.2363,-47.3585,-42.8431,-44.237,0,-39.4205	1/2:142:0,63,79:0:0:63,79:2183,2827:-408.297,-230.882,-211.917,-177.766,0,-153.985	1/2:16: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chr05	841977	.	TT	AC,AT	479535	PASS	AB=0.355759,0.642162;ABP=1915.5,1860.77;AC=132,56;AF=0.702128,0.297872;AN=188;AO=12267,8282;CIGAR=2X,1X1M;DP=20601;DPB=20611.5;DPRA=221.505,1.30522;EPP=26640.5,17987.1;EPPR=22.5536;GTI=10;LEN=2,1;MEANALT=2.09677,2.36923;MQM=58.9273,59.7485;MQMR=60;NS=94;NUMALT=2;ODDS=47289.5;PAIRED=0,0;PAIREDR=0;PAO=21,0;PQA=728,0;PQR=0;PRO=0;QA=428018,295049;QR=289;RO=9;RPL=5,3887;RPP=26597.1,70.6726;RPPR=5.18177;RPR=12262,4395;RUN=1,1;SAF=5,3887;SAP=26597.1,70.6726;SAR=12262,4395;SRF=3;SRP=5.18177;SRR=6;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:172:0,44,128:0:0:44,128:1538,4536:-494.973,-369.859,-356.614,-125.464,0,-86.9325	1/2:472:0,202,267:0:0:202,267:7097,9477:-1349.63,-772.084,-711.276,-577.556,0,-497.181	1/1:218:0,218,0:0:0:218,0:7668,0:-689.842,-65.6245,0,-689.842,-65.6245,-689.842	1/1:596:0,593,0:0:0:593,0:20576,0:-1849.86,-178.511,0,-1849.86,-178.511,-1849.86	1/2:141:0,45,96:0:0:45,96:1578,3408:-406.301,-277.906,-264.36,-128.746,0,-99.8475	1/2:153:0,44,109:0:0:44,109:1533,3890:-442.03,-317.474,-304.229,-124.906,0,-92.0941	1/1:244:0,244,0:0:0:244,0:8515,0:-765.953,-73.4513,0,-765.953,-73.4513,-765.953	1/1:413:0,413,0:0:0:413,0:14442,0:-1297.51,-124.325,0,-1297.51,-124.325,-1297.51	1/2:311:0,111,199:0:0:111,199:3911,7097:-896.589,-578.507,-545.093,-318.095,0,-258.19	1/1:310:0,309,0:0:0:309,0:10748,0:-966.207,-93.0183,0,-966.207,-93.0183,-966.207	1/1:75:1,73,1:1:36:73,1:2516,36:-222.932,-19.0378,0,-220.296,-19.0378,-222.932	1/1:133:0,132,1:0:0:132,1:4500,36:-404.77,-39.736,0,-401.832,-36.7919,-401.531	1/2:264:0,78,186:0:0:78,186:2703,6602:-757.796,-538.147,-514.667,-219.998,0,-164.006	1/1:140:0,139,0:0:0:139,0:4831,0:-434.118,-41.8432,0,-434.118,-41.8432,-434.118	1/2:236:0,80,156:0:0:80,156:2795,5582:-682.711,-455.517,-431.434,-227.546,0,-180.585	1/1:124:0,122,1:0:0:122,1:4243,36:-381.696,-36.7257,0,-378.759,-33.7333,-378.458	1/1:156:0,155,1:0:0:155,1:5463,36:-491.224,-46.6597,0,-488.286,-43.7222,-487.985	1/1:131:0,130,1:0:0:130,1:4585,36:-412.008,-39.1339,0,-409.07,-35.8367,-408.769	1/1:31:0,31,0:0:0:31,0:1093,0:-98.6758,-9.33193,0,-98.6758,-9.33193,-98.6758	1/2:562:0,249,312:0:0:249,312:8700,11124:-1613.71,-906.478,-831.521,-707.225,0,-613.304	1/2:535:0,141,393:0:0:141,393:4921,13971:-1538.36,-1138.24,-1095.8,-400.114,0,-281.809	2/2:208:0,1,207:0:0:1,207:25,7311:-657.783,-655.834,-655.533,-62.3132,-60.1144,0	1/2:311:0,106,205:0:0:106,205:3708,7322:-898.166,-596.807,-564.898,-301.351,0,-239.64	1/2:288:0,253,35:0:0:253,35:8730,1235:-809.351,-100.562,-24.4018,-708.794,0,-698.258	1/2:176:0,53,122:0:0:53,122:1864,4357:-506.656,-354.926,-338.971,-151.724,0,-114.998	1/2:32:0,27,4:0:0:27,4:895,144:-83.9145,-11.7783,-3.65053,-72.1645,0,-70.9604	1/1:365:0,364,0:0:0:364,0:12720,0:-1141.91,-109.575,0,-1141.91,-109.575,-1141.91	1/1:76:0,76,0:0:0:76,0:2629,0:-236.833,-22.8783,0,-236.833,-22.8783,-236.833	2/2:433:0,10,422:0:0:10,422:324,15097:-1357.66,-1331.6,-1328.59,-127.035,-101.005,0	1/2:484:1,181,298:1:25:181,298:6323,10623:-1377.55,-863.759,-811.221,-512.175,0,-424.417	1/2:285:0,93,191:0:0:93,191:3133,6845:-811.731,-558.355,-530.359,-253.499,0,-196.002	1/2:10:0,4,6:0:0:4,6:144,216:-29.6887,-17.9843,-16.7802,-12.0635,0,-10.2573	1/2:14:0,11,3:0:0:11,3:394,108:-41.2577,-9.17208,-5.86075,-32.4449,0,-31.5419	2/2:14:0,1,13:0:0:1,13:36,468:-42.0998,-39.1624,-38.8614,-3.91339,-0.616145,0	1/1:8:0,8,0:0:0:8,0:282,0:-25.7214,-2.40824,0,-25.7214,-2.40824,-25.7214	1/2:29:0,10,19:0:0:10,19:345,671:-83.0202,-54.9962,-51.9859,-28.3716,0,-22.652	1/1:17:1,16,0:1:36:16,0:537,0:-44.0609,-1.51924,0,-44.3619,-4.81648,-47.3011	1/1:401:2,397,2:2:70:397,2:13742,72:-1228.85,-113.817,0,-1223.57,-113.631,-1228.67	1/1:82:0,82,0:0:0:82,0:2884,0:-259.24,-24.6845,0,-259.24,-24.6845,-259.24	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:337:0,337,0:0:0:337,0:11805,0:-1061.85,-101.447,0,-1061.85,-101.447,-1061.85	1/2:120:0,33,87:0:0:33,87:1175,3103:-349.04,-253.295,-243.361,-96.1012,0,-69.9116	1/1:240:0,239,1:0:0:239,1:8351,36:-750.717,-71.9462,0,-747.78,-68.6489,-747.479	1/1:164:0,163,0:0:0:163,0:5714,0:-513.188,-49.0679,0,-513.188,-49.0679,-513.188	1/2:190:1,64,125:1:36:64,125:2184,4428:-534.604,-357.759,-341.43,-174.194,0,-139.503	2/2:190:0,4,183:0:0:4,183:140,6547:-588.925,-577.536,-576.331,-55.0885,-43.7046,0	1/1:289:0,289,0:0:0:289,0:10085,0:-907.245,-86.9977,0,-907.245,-86.9977,-907.245	1/2:616:1,238,377:1:25:238,377:8255,13413:-1761.15,-1090.69,-1021,-668.906,0,-557.366	1/1:279:0,274,4:0:0:274,4:9642,144:-866.659,-82.4822,0,-854.91,-70.7286,-853.706	1/1:274:0,274,0:0:0:274,0:9557,0:-859.481,-82.4822,0,-859.481,-82.4822,-859.481	1/2:3:0,2,1:0:0:2,1:64,36:-8.42635,-3.29724,-2.69518,-5.47562,0,-5.17459	1/2:15:1,5,9:1:25:5,9:180,324:-38.9798,-24.5954,-25.0281,-12.8464,0,-12.0677	1/1:248:0,247,1:0:0:247,1:8682,36:-780.79,-74.3544,0,-777.853,-71.413,-777.552	2/2:108:0,5,103:0:0:5,103:149,3663:-329.553,-317.654,-316.149,-31.0061,-18.8069,0	1/2:19:0,6,13:0:0:6,13:216,468:-56.1708,-38.5463,-36.7401,-17.984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chr05	945151	.	A	G	24731.5	PASS	AB=0.512579;ABP=6.94353;AC=44;AF=0.236559;AN=186;AO=1476;CIGAR=1X;DP=6287;DPB=6287;DPRA=1.05549;EPP=3208.1;EPPR=10445.6;GTI=0;LEN=1;MEANALT=1.04082;MQM=59.9919;MQMR=59.9909;NS=93;NUMALT=1;ODDS=2.88658;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52692;QR=171579;RO=4809;RPL=0;RPP=3208.1;RPPR=10445.6;RPR=1476;RUN=1;SAF=1476;SAP=3208.1;SAR=0;SRF=4809;SRP=10445.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/1:62:20,42:20:705:42:1508:-117.351,0,-45.1089	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:143:143,0:143:5098:0:0:0,-43.0473,-458.962	0/1:51:18,33:18:648:33:1172:-90.435,0,-43.2994	0/1:20:10,10:10:360:10:345:-25.3602,0,-26.7237	0/0:111:111,0:111:3950:0:0:0,-33.4143,-355.69	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/1:56:25,31:25:892:31:1116:-83.894,0,-63.742	0/0:100:100,0:100:3569:0:0:0,-30.103,-321.38	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:70:33,37:33:1169:37:1319:-97.9391,0,-84.4432	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:60:32,28:32:1137:28:1008:-72.9746,0,-84.5752	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:154:72,82:72:2573:82:2940:-218.475,0,-185.459	0/1:92:45,47:45:1620:47:1680:-123.792,0,-118.395	0/1:72:14,58:14:489:58:2080:-165.796,0,-22.6647	0/1:35:13,22:13:468:22:788:-60.7087,0,-31.9236	0/0:70:65,5:65:2325:5:180:0,-4.52003,-192.956	0/1:46:20,26:20:705:26:913:-68.6366,0,-49.9254	0/0:271:271,0:271:9608:0:0:0,-81.5791,-864.68	0/1:137:53,84:53:1893:84:3004:-229.351,0,-129.405	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:215:109,106:109:3867:106:3788:-276.397,0,-283.501	0/1:55:28,27:28:993:27:968:-70.8807,0,-73.1259	0/1:59:28,31:28:1008:31:1097:-81.2772,0,-73.2756	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:2,2:2:72:2:57:-4.20919,0,-5.6326	0/0:106:106,0:106:3797:0:0:0,-31.9092,-341.796	0/0:129:129,0:129:4598:0:0:0,-38.8329,-413.983	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:70:69,1:69:2465:1:36:0,-17.4738,-218.504	0/1:24:11,13:11:396:13:460:-34.5107,0,-28.758	0/0:95:94,1:94:3360:1:36:0,-24.9996,-299.019	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:40:20,20:20:720:20:716:-52.7265,0,-53.0876	0/1:64:42,21:42:1500:21:741:-47.6872,0,-115.97	0/0:76:76,0:76:2705:0:0:0,-22.8783,-243.693	0/1:152:86,66:86:3061:66:2357:-166.632,0,-229.962	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.436	0/0:178:178,0:178:6336:0:0:0,-53.5833,-570.328	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/1:19:8,11:8:269:11:392:-29.9005,0,-18.8166	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:99:60,39:60:2145:39:1370:-93.7925,0,-163.514	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:16:5,11:5:176:11:396:-31.1663,0,-11.3685	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:23:12,11:12:428:11:381:-27.6969,0,-31.9351	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:125:71,54:71:2556:54:1944:-137.606,0,-192.661	0/1:158:83,75:83:2973:75:2691:-194.869,0,-220.238	0/1:57:27,30:27:968:30:1060:-78.5503,0,-70.2787	0/1:69:35,34:35:1256:34:1224:-89.696,0,-92.5742	0/0:107:107,0:107:3787:0:0:0,-32.2102,-341.027	0/0:66:66,0:66:2341:0:0:0,-19.868,-210.948	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:71:70,1:70:2482:1:36:0,-17.7749,-220.032	0/1:59:36,23:36:1272:23:828:-57.0833,0,-97.0221	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/1:123:71,52:71:2544:52:1856:-130.293,0,-192.184	0/1:62:28,34:28:985:34:1220:-91.4429,0,-70.2977	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:87:39,48:39:1400:48:1720:-128.896,0,-100.11	0/1:107:52,55:52:1857:55:1952:-143.744,0,-135.198	0/0:229:228,1:228:8070:1:36:0,-65.3376,-722.722	0/1:68:35,33:35:1226:33:1180:-86.038,0,-90.1697	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:78:50,28:50:1792:28:981:-65.1207,0,-138.082	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:56:23,33:23:828:33:1180:-89.6504,0,-57.9864	0/1:47:23,23:23:828:23:828:-60.6369,0,-60.6369	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:65:23,42:23:828:42:1500:-115.728,0,-55.2772	0/1:27:10,17:10:360:17:604:-46.5628,0,-24.6165	0/0:108:108,0:108:3846:0:0:0,-32.5112,-346.334	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068
chr05	945196	.	G	A	93806.9	PASS	AB=0.47482;ABP=18.32;AC=142;AF=0.763441;AN=186;AO=4528;CIGAR=1X;DP=6006;DPB=6006;DPRA=0;EPP=9826.75;EPPR=3208.1;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.9887;MQMR=60;NS=93;NUMALT=1;ODDS=3.22044;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159842;QR=52456;RO=1476;RPL=4527;RPP=9826.75;RPPR=3208.1;RPR=1;RUN=1;SAF=4528;SAP=9835.44;SAR=0;SRF=1476;SRP=3208.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:10,13:10:345:13:456:-34.4495,0,-24.4571	0/1:60:42,18:42:1508:18:640:-39.8675,0,-117.953	1/1:58:0,58:0:0:58:2014:-181.528,-17.4597,0	1/1:132:0,132:0:0:132:4670:-420.466,-39.736,0	0/1:51:32,19:32:1152:19:676:-45.8155,0,-88.6376	0/1:20:10,10:10:352:10:351:-25.9061,0,-25.9976	1/1:99:2,97:2:72:97:3422:-301.358,-22.9652,0	1/1:65:0,65:0:0:65:2290:-206.36,-19.567,0	0/1:57:31,26:31:1108:26:877:-62.078,0,-82.8723	1/1:94:0,94:0:0:94:3338:-300.554,-28.2968,0	1/1:59:0,59:0:0:59:2111:-190.258,-17.7608,0	1/1:49:0,49:0:0:49:1722:-155.264,-14.7505,0	0/1:69:36,33:36:1265:33:1146:-82.6731,0,-93.3795	1/1:48:0,48:0:0:48:1692:-152.566,-14.4494,0	0/1:60:28,32:28:992:32:1143:-85.1169,0,-71.5326	1/1:51:1,50:1:36:50:1742:-153.463,-11.7543,0	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	1/1:25:0,25:0:0:25:880:-79.5171,-7.52575,0	0/1:150:82,68:82:2918:68:2393:-170.473,0,-217.7	0/1:86:46,40:46:1633:40:1431:-103.198,0,-121.368	0/1:71:58,13:58:2063:13:468:-21.0865,0,-164.567	0/1:29:19,10:19:680:10:360:-24.0144,0,-52.7993	1/1:67:5,62:5:180:62:2195:-181.263,-3.61695,0	0/1:40:25,15:25:900:15:536:-36.5336,0,-69.2798	1/1:243:0,243:0:0:243:8574:-771.669,-73.1503,0	0/1:129:81,48:81:2899:48:1716:-115.893,0,-222.312	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	0/1:213:108,105:108:3824:105:3690:-268.186,0,-280.236	0/1:53:26,27:26:920:27:972:-71.8433,0,-67.1625	0/1:59:32,27:32:1129:27:964:-69.3161,0,-84.1556	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:14:0,14:0:0:14:481:-43.6151,-4.21442,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:101:0,101:0:0:101:3557:-320.212,-30.404,0	1/1:122:0,122:0:0:122:4348:-391.497,-36.7257,0	1/1:39:0,39:0:0:39:1374:-123.957,-11.7402,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:64:1,63:1:36:63:2225:-196.915,-15.6676,0	0/1:23:12,11:12:424:11:388:-28.3337,0,-31.5727	1/1:92:1,91:1:36:91:3231:-287.415,-24.0965,0	1/1:42:2,40:2:68:40:1386:-118.577,-6.18555,0	0/1:39:19,20:19:671:20:711:-52.5755,0,-48.9756	0/1:60:25,35:25:887:35:1243:-94.1121,0,-62.0863	1/1:71:0,71:0:0:71:2518:-226.869,-21.3731,0	0/1:149:64,85:64:2280:85:2999:-225.289,0,-160.609	1/1:84:0,84:0:0:84:2953:-266.003,-25.2865,0	1/1:64:0,64:0:0:64:2252:-202.942,-19.2659,0	1/1:178:0,178:0:0:178:6279:-565.212,-53.5833,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:88:1,87:1:32:87:3074:-273.688,-23.2913,0	0/1:20:12,8:12:428:8:284:-19.8828,0,-32.8382	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:98:39,59:39:1385:59:2076:-157.608,0,-95.4459	1/1:23:0,23:0:0:23:813:-73.4912,-6.92369,0	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:23:11,12:11:392:12:413:-30.5741,0,-28.6964	1/1:92:1,91:1:36:91:3208:-285.346,-24.0965,0	1/1:7:0,7:0:0:7:222:-20.2892,-2.10721,0	0/1:119:53,65:53:1887:65:2319:-173.089,0,-134.226	0/1:151:71,79:71:2504:79:2785:-205.377,0,-180.097	0/1:54:31,23:31:1103:23:809:-56.8727,0,-83.3242	0/1:70:35,35:35:1256:35:1224:-89.3888,0,-92.2732	1/1:102:0,102:0:0:102:3584:-322.765,-30.7051,0	1/1:62:0,62:0:0:62:2170:-195.566,-18.6639,0	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	1/1:65:1,64:1:36:64:2276:-201.504,-15.9687,0	0/1:57:23,34:23:807:34:1210:-92.0477,0,-55.7905	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:50:0,50:0:0:50:1737:-156.61,-15.0515,0	1/1:59:0,59:0:0:59:2094:-188.73,-17.7608,0	1/1:80:0,80:0:0:80:2841:-255.928,-24.0824,0	0/1:119:53,66:53:1876:66:2360:-176.836,0,-133.294	0/1:62:36,26:36:1284:26:913:-63.821,0,-97.1996	1/1:66:0,66:0:0:66:2310:-208.159,-19.868,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:83:46,37:46:1643:37:1296:-91.9528,0,-123.172	0/1:103:54,49:54:1928:49:1740:-125.878,0,-142.791	1/1:216:2,214:2:72:214:7582:-675.586,-58.1858,0	0/1:66:33,33:33:1163:33:1148:-83.7551,0,-85.1081	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:61:0,61:0:0:61:2123:-191.337,-18.3628,0	0/1:74:27,47:27:955:47:1661:-127.501,0,-63.9886	1/1:34:0,34:0:0:34:1212:-109.381,-10.235,0	0/1:57:34,23:34:1188:23:802:-55.3387,0,-90.0634	0/1:44:23,21:23:820:21:722:-52.0522,0,-60.8772	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:65:41,24:41:1451:24:855:-57.7041,0,-111.318	0/1:28:18,10:18:648:10:360:-24.3155,0,-50.223	1/1:101:0,101:0:0:101:3546:-319.348,-30.404,0	1/1:59:1,58:1:36:58:2042:-180.453,-14.1625,0
chr05	996487	.	G	C	35493.6	PASS	AB=0.414136;ABP=563.858;AC=96;AF=0.510638;AN=188;AO=3727;CIGAR=1X;DP=8868;DPB=8868;DPRA=19.0602;EPP=7906.13;EPPR=10883.7;GTI=2;LEN=1;MEANALT=1.07527;MQM=29.9222;MQMR=59.9815;NS=94;NUMALT=1;ODDS=3.88037;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133133;QR=183716;RO=5134;RPL=23;RPP=7897.55;RPPR=10883.7;RPR=3704;RUN=1;SAF=3726;SAP=8087.4;SAR=1;SRF=5134;SRP=11151.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:7,10:7:252:10:356:-21.2462,0,-17.9114	0/1:130:75,55:75:2688:55:1967:-102.252,0,-203.031	0/1:49:31,18:31:1116:18:648:-31.0212,0,-85.9654	0/1:198:172,25:172:6094:25:892:-5.58391,0,-488.903	0/1:33:21,12:21:752:12:432:-21.1727,0,-58.0723	0/1:27:13,14:13:468:14:504:-29.3682,0,-34.3318	0/1:63:40,23:40:1436:23:824:-40.9974,0,-110.573	0/1:127:64,63:64:2283:63:2247:-126.135,0,-167.501	0/1:51:26,25:26:920:25:877:-49.0176,0,-67.7645	0/1:147:90,57:90:3216:57:2027:-103.787,0,-245.412	0/1:44:22,22:22:788:22:783:-45.2845,0,-57.9995	0/1:64:26,38:26:932:38:1364:-80.0447,0,-64.9329	0/1:84:45,39:45:1603:39:1387:-76.0405,0,-119.273	0/1:54:40,14:40:1440:14:504:-20.1376,0,-113.642	0/1:63:32,31:32:1148:31:1116:-61.9325,0,-84.6649	0/1:42:29,13:29:1040:13:453:-20.6418,0,-81.2353	0/1:80:48,32:48:1724:32:1148:-59.3129,0,-131.363	0/1:63:33,30:33:1188:30:1080:-59.867,0,-88.2637	0/1:21:11,10:11:396:10:360:-19.7804,0,-29.6611	0/1:138:97,41:97:3468:41:1444:-64.4059,0,-270.79	0/1:172:135,36:135:4840:36:1287:-42.6298,0,-383.987	0/1:84:37,47:37:1323:47:1686:-94.3367,0,-94.0848	0/1:74:35,39:35:1252:39:1396:-79.4364,0,-90.7089	0/1:113:76,37:76:2732:37:1324:-61.82,0,-212.106	0/1:25:13,12:13:464:12:423:-24.5618,0,-34.5718	0/1:314:195,119:195:6989:119:4264:-205.467,0,-534.547	0/1:126:72,54:72:2576:54:1911:-102.284,0,-194.124	0/1:27:19,8:19:680:8:279:-12.0181,0,-53.4014	0/1:322:194,127:194:6964:127:4543:-224.011,0,-529.832	0/1:183:87,96:87:3086:96:3432:-194.702,0,-222.88	0/1:51:43,8:43:1544:8:276:-5.89831,0,-123.901	0/1:18:9,9:9:324:9:311:-17.9874,0,-24.0873	0/1:21:7,14:7:252:14:504:-30.3924,0,-16.7073	0/1:58:13,45:13:468:45:1589:-98.8047,0,-24.9999	0/1:29:21,8:21:756:8:288:-12.1464,0,-59.6374	0/1:19:9,10:9:324:10:360:-20.8375,0,-23.7863	0/1:189:94,95:94:3364:95:3397:-183.988,0,-246.082	0/1:90:62,28:62:2216:28:1000:-45.7228,0,-172.612	0/1:31:18,13:18:648:13:460:-24.5607,0,-49.32	0/1:3:1,2:1:36:2:72:-4.61216,0,-2.69518	0/1:203:110,91:110:3952:91:3255:-177.075,0,-295.05	0/1:39:16,23:16:576:23:828:-49.1157,0,-40.4348	0/1:41:23,18:23:820:18:640:-34.644,0,-61.7803	0/1:61:39,22:39:1404:22:762:-38.2326,0,-108.296	0/1:52:42,10:42:1495:10:360:-10.7616,0,-119.19	0/1:48:30,18:30:1065:18:648:-31.5342,0,-81.7103	0/1:72:55,17:55:1976:17:608:-22.9242,0,-156.44	0/1:209:114,94:114:4080:94:3336:-179.539,0,-304.38	0/1:113:69,44:69:2467:44:1580:-80.74,0,-188.267	0/1:192:115,77:115:4136:77:2739:-142.46,0,-314.624	0/1:163:96,67:96:3444:67:2396:-120.951,0,-261.104	0/1:29:4,25:4:144:25:896:-57.1729,0,-4.58375	0/1:47:33,14:33:1176:14:500:-22.6123,0,-91.9994	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:13:8,5:8:280:5:176:-9.33349,0,-21.6259	0/1:71:40,31:40:1420:31:1112:-59.8004,0,-106.724	0/1:23:17,6:17:612:6:212:-8.74645,0,-48.4897	1/1:39:2,37:2:72:37:1332:-87.1522,-4.90345,0	0/1:223:91,132:91:3272:132:4713:-267.857,0,-227.569	0/1:47:27,20:27:964:20:708:-38.0793,0,-72.9284	0/1:106:70,36:70:2498:36:1296:-62.4307,0,-193.162	1/1:33:0,33:0:0:33:1167:-83.491,-9.93399,0	0/1:537:308,228:308:11020:228:8161:-415.713,0,-830.21	0/1:191:92,99:92:3300:99:3552:-202.849,0,-239.722	0/1:121:70,51:70:2503:51:1796:-96.3826,0,-189.097	0/1:50:36,14:36:1280:14:495:-20.7624,0,-100.452	0/1:123:91,32:91:3264:32:1148:-46.6089,0,-256.953	0/1:119:57,62:57:2040:62:2223:-125.768,0,-148.049	0/1:12:4,8:4:144:8:288:-17.4258,0,-9.70126	0/1:83:38,45:38:1355:45:1616:-92.539,0,-97.2642	0/1:85:59,26:59:2124:26:932:-40.3873,0,-165.841	0/1:57:23,34:23:828:34:1224:-71.3447,0,-57.6854	0/1:84:52,32:52:1872:32:1120:-56.5603,0,-143.473	0/1:61:39,22:39:1374:22:784:-39.5219,0,-105.594	0/1:99:44,55:44:1584:55:1976:-114.071,0,-113.05	0/1:360:199,161:199:7131:161:5754:-310.508,0,-533.475	0/1:33:17,16:17:595:16:576:-32.1561,0,-43.9427	0/1:159:116,43:116:4121:43:1540:-62.681,0,-323.212	1/1:33:3,30:3:104:30:1068:-68.6504,-0.231185,0	0/1:136:94,42:94:3376:42:1508:-68.6703,0,-263.079	0/1:87:62,25:62:2220:25:888:-38.9806,0,-173.875	0/1:185:115,70:115:4105:70:2516:-128.35,0,-313.944	0/1:73:51,22:51:1828:22:788:-35.5351,0,-142.826	0/1:81:38,43:38:1364:43:1536:-87.5581,0,-98.6773	0/1:106:73,33:73:2603:33:1180:-55.0839,0,-202.606	0/1:118:78,40:78:2770:40:1427:-69.1397,0,-214.02	0/1:40:20,20:20:720:20:716:-40.244,0,-53.0876	0/1:100:47,53:47:1692:53:1904:-109.05,0,-122.464	0/1:85:43,42:43:1548:42:1508:-83.7827,0,-114.026	0/1:30:19,11:19:684:11:396:-18.1445,0,-52.8594	0/1:41:29,12:29:1040:12:432:-19.2979,0,-81.5721	0/1:37:25,12:25:896:12:432:-20.502,0,-69.8222	0/1:160:76,84:76:2707:84:3016:-170.838,0,-195.709	0/1:109:48,61:48:1701:61:2154:-124.537,0,-120.562
chr05	996497	.	C	T	34051.1	PASS	AB=0.41399;ABP=567.054;AC=95;AF=0.505319;AN=188;AO=3701;CIGAR=1X;DP=8852;DPB=8852;DPRA=19.0258;EPP=8022.27;EPPR=11173.1;GTI=1;LEN=1;MEANALT=1.02151;MQM=29.8884;MQMR=59.98;NS=94;NUMALT=1;ODDS=3.89613;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132516;QR=183683;RO=5148;RPL=3700;RPP=8030.95;RPPR=11173.1;RPR=1;RUN=1;SAF=3700;SAP=8030.95;SAR=1;SRF=5148;SRP=11181.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:7,10:7:252:10:360:-21.3686,0,-17.9114	0/1:129:74,55:74:2652:55:1972:-102.791,0,-200.093	0/1:48:31,17:31:1103:17:608:-28.605,0,-85.0945	0/1:197:171,26:171:6123:26:923:-8.31506,0,-491.866	0/1:34:21,13:21:752:13:459:-23.2583,0,-57.7712	0/1:27:13,14:13:459:14:500:-28.6329,0,-33.5163	0/1:64:42,22:42:1491:22:785:-38.0499,0,-115.218	0/1:125:63,62:63:2249:62:2232:-124.407,0,-165.043	0/1:51:26,25:26:932:25:887:-49.7411,0,-68.8463	0/1:150:92,58:92:3296:58:2084:-106.096,0,-251.704	0/1:45:23,22:23:824:22:788:-44.9654,0,-60.937	0/1:65:27,38:27:968:38:1364:-80.3715,0,-67.8704	0/1:83:45,38:45:1601:38:1355:-73.8328,0,-119.393	0/1:54:41,13:41:1476:13:464:-17.4741,0,-116.881	0/1:65:34,31:34:1181:31:1116:-61.3304,0,-87.0228	0/1:41:29,12:29:1044:12:432:-19.1466,0,-81.8967	0/1:80:48,32:48:1724:32:1148:-59.3129,0,-131.363	0/1:64:34,30:34:1224:30:1063:-59.0695,0,-91.2011	0/1:21:11,10:11:381:10:360:-19.7804,0,-28.299	0/1:139:98,41:98:3511:41:1464:-65.9393,0,-274.356	0/1:172:135,37:135:4818:37:1328:-45.4697,0,-381.998	0/1:81:35,46:35:1256:46:1652:-92.6703,0,-88.9619	0/1:75:36,39:36:1284:39:1400:-79.1857,0,-93.2862	0/1:113:77,36:77:2740:36:1292:-59.4678,0,-212.827	0/1:25:13,12:13:468:12:428:-25.0155,0,-34.9339	0/1:311:192,119:192:6867:119:4265:-206.229,0,-524.479	0/1:123:70,53:70:2500:53:1895:-101.051,0,-188.191	0/1:27:19,8:19:684:8:288:-12.4345,0,-53.7625	0/1:324:198,126:198:7068:126:4520:-222.172,0,-538.65	0/1:183:88,95:88:3164:95:3412:-193.031,0,-229.895	0/1:50:43,7:43:1540:7:239:-3.71048,0,-123.842	0/1:18:9,9:9:320:9:324:-18.4552,0,-23.7238	0/1:21:7,14:7:248:14:504:-30.3924,0,-16.3426	0/1:58:14,44:14:504:44:1565:-96.0547,0,-28.2384	0/1:33:25,8:25:896:8:279:-10.5965,0,-71.0264	0/1:18:9,9:9:311:9:324:-18.4552,0,-22.9052	0/1:190:95,93:95:3366:93:3331:-179.012,0,-246.275	0/1:90:62,28:62:2169:28:999:-45.6628,0,-168.383	0/1:30:17,13:17:603:13:468:-25.0705,0,-45.5686	0/1:4:2,2:2:72:2:72:-4.31113,0,-5.6326	0/1:204:112,92:112:4008:92:3284:-176.896,0,-299.454	0/1:39:16,23:16:576:23:824:-49.0116,0,-40.4348	0/1:42:23,19:23:828:19:684:-37.0596,0,-62.2009	0/1:59:40,19:40:1421:19:684:-32.411,0,-110.425	0/1:52:42,10:42:1495:10:356:-10.6569,0,-119.19	0/1:50:32,18:32:1137:18:648:-30.9321,0,-87.5855	0/1:72:54,18:54:1931:18:648:-25.6409,0,-152.392	0/1:208:115,93:115:4095:93:3306:-177.345,0,-306.051	0/1:108:65,43:65:2327:43:1540:-79.5288,0,-177.178	0/1:193:115,78:115:4116:78:2792:-145.621,0,-312.526	0/1:163:96,67:96:3419:67:2389:-120.528,0,-258.857	0/1:28:4,24:4:144:24:864:-54.9655,0,-4.88478	0/1:48:34,14:34:1216:14:504:-22.4157,0,-95.2971	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:13:7,6:7:243:6:216:-12.0518,0,-18.2941	0/1:72:40,32:40:1431:32:1152:-62.0653,0,-107.413	0/1:23:17,6:17:612:6:207:-8.4612,0,-48.4897	1/1:36:2,34:2:72:34:1212:-79.2983,-4.00036,0	0/1:222:92,130:92:3259:130:4629:-261.523,0,-226.701	0/1:46:26,20:26:928:20:711:-38.3497,0,-69.9909	0/1:106:70,36:70:2476:36:1296:-62.4307,0,-191.183	1/1:33:0,33:0:0:33:1184:-85.4784,-9.93399,0	0/1:538:309,229:309:11022:229:8215:-417.268,0,-829.919	0/1:189:92,97:92:3274:97:3471:-196.163,0,-237.986	0/1:117:67,50:67:2386:50:1796:-95.688,0,-179.776	0/1:49:35,14:35:1243:14:504:-21.4071,0,-97.4234	0/1:122:90,32:90:3211:32:1152:-47.0138,0,-252.487	0/1:119:57,62:57:2044:62:2219:-125.781,0,-148.409	0/1:13:6,7:6:208:7:252:-14.512,0,-15.1457	0/1:83:38,45:38:1338:45:1616:-92.539,0,-95.733	0/1:85:59,26:59:2116:26:936:-40.4752,0,-165.121	0/1:57:22,35:22:792:35:1236:-73.2296,0,-54.447	0/1:86:53,33:53:1887:33:1180:-60.282,0,-144.219	0/1:61:39,22:39:1404:22:792:-39.73,0,-108.296	0/1:98:44,54:44:1568:54:1944:-111.864,0,-111.911	0/1:359:198,161:198:7082:161:5758:-310.903,0,-529.37	0/1:32:17,15:17:608:15:540:-29.8446,0,-45.4191	0/1:156:113,43:113:4060:43:1548:-63.749,0,-318.625	0/1:33:3,30:3:108:30:1076:-68.627,0,-0.14118	0/1:138:97,41:97:3467:41:1468:-65.1225,0,-270.664	0/1:86:62,24:62:2212:24:864:-36.9508,0,-173.456	0/1:186:117,68:117:4165:68:2448:-123.02,0,-318.983	0/1:75:54,21:54:1898:21:756:-32.4246,0,-148.519	0/1:83:40,43:40:1431:43:1544:-87.1637,0,-104.101	0/1:104:71,33:71:2517:33:1173:-54.5407,0,-195.474	0/1:117:78,39:78:2804:39:1379:-65.5153,0,-217.379	0/1:40:20,20:20:720:20:720:-40.3481,0,-53.0876	0/1:101:49,52:49:1756:52:1872:-105.683,0,-127.92	0/1:82:41,41:41:1433:41:1472:-82.0733,0,-104.577	0/1:29:17,12:17:612:12:429:-21.0288,0,-46.6836	0/1:40:28,12:28:993:12:432:-19.5989,0,-77.6413	0/1:37:26,11:26:910:11:396:-17.8895,0,-71.076	0/1:160:75,85:75:2664:85:3039:-173.005,0,-191.842	0/1:110:48,62:48:1715:62:2210:-127.571,0,-121.522
chr05	1032919	.	TTT	GTC,GTT	111689	PASS	AB=0.508177,0.48943;ABP=4.46632,5.44335;AC=140,44;AF=0.76087,0.23913;AN=184;AO=4023,1232;CIGAR=1X1M1X,1X2M;DP=5269;DPB=5271;DPRA=0,1.02265;EPP=8738.84,2678.26;EPPR=0;GTI=1;LEN=3,1;MEANALT=1.65217,2.15217;MQM=59.9436,59.9619;MQMR=0;NS=92;NUMALT=2;ODDS=0.43718;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=54,54;PQR=0;PRO=3;QA=141774,44030;QR=0;RO=0;RPL=4023,1232;RPP=8738.84,2678.26;RPPR=0;RPR=0,0;RUN=1,1;SAF=4023,1232;SAP=8738.84,2678.26;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:9:0,2,7:0:0:2,7:72,248:-26.4331,-20.557,-19.9549,-6.23466,0,-4.12745	1/2:103:0,58,45:0:0:58,45:2008,1620:-295.717,-132.544,-115.084,-163.527,0,-149.98	1/1:68:0,68,0:0:0:68,0:2394,0:-215.718,-20.47,0,-215.718,-20.47,-215.718	1/1:120:0,118,0:0:0:118,0:4179,0:-375.936,-35.5215,0,-375.936,-35.5215,-375.936	1/2:11:0,6,5:0:0:6,5:208,180:-31.9455,-15.0469,-13.2407,-17.2523,0,-15.7472	1/2:17:0,10,7:0:0:10,7:349,252:-49.3015,-20.9217,-17.9114,-28.7351,0,-26.6279	1/2:94:0,47,47:0:0:47,47:1650,1688:-272.34,-138.059,-123.91,-134.637,0,-120.488	1/1:56:0,56,0:0:0:56,0:1950,0:-175.773,-16.8577,0,-175.773,-16.8577,-175.773	1/2:51:0,24,27:0:0:24,27:852,952:-147.289,-77.8674,-70.6427,-69.7756,0,-61.6477	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7919,-9.0309,0,-96.7919,-9.0309,-96.7919	1/1:25:0,25,0:0:0:25,0:859,0:-77.6202,-7.52575,0,-77.6202,-7.52575,-77.6202	1/1:37:0,37,0:0:0:37,0:1299,0:-117.193,-11.1381,0,-117.193,-11.1381,-117.193	1/2:26:0,15,11:0:0:15,11:534,392:-75.8233,-32.3005,-27.7851,-43.8788,0,-40.5675	1/1:43:0,43,0:0:0:43,0:1470,0:-132.588,-12.9443,0,-132.588,-12.9443,-132.588	1/2:32:0,14,18:0:0:14,18:504,639:-93.5457,-52.4197,-48.2053,-41.4837,0,-36.0651	1/1:33:0,33,0:0:0:33,0:1155,0:-104.255,-9.93399,0,-104.255,-9.93399,-104.255	1/1:46:0,46,0:0:0:46,0:1616,0:-145.727,-13.8474,0,-145.727,-13.8474,-145.727	1/1:37:0,37,0:0:0:37,0:1297,0:-117.029,-11.1381,0,-117.029,-11.1381,-117.029	1/1:16:0,16,0:0:0:16,0:561,0:-50.8171,-4.81648,0,-50.8171,-4.81648,-50.8171	1/2:86:0,52,34:0:0:52,34:1856,1220:-251.166,-99.858,-84.2045,-151.666,0,-141.431	1/2:146:0,66,80:0:0:66,80:2318,2838:-420.211,-231.551,-211.683,-189.013,0,-164.93	1/2:31:0,11,20:0:0:11,20:388,720:-90.6985,-59.1082,-55.7968,-31.9455,0,-25.9249	1/2:41:0,21,20:0:0:21,20:750,720:-120.24,-59.1082,-52.7865,-61.4907,0,-55.4701	1/2:47:0,42,5:0:0:42,5:1489,180:-136.348,-15.0469,-2.40365,-121.66,0,-120.155	1/2:11:0,5,6:0:0:5,6:180,212:-32.3087,-17.6186,-16.1135,-15.0469,0,-13.2407	1/1:171:0,171,0:0:0:171,0:6051,0:-544.682,-51.4761,0,-544.682,-51.4761,-544.682	1/2:106:0,56,50:0:0:56,50:1972,1796:-307.409,-146.871,-130.013,-160.894,0,-145.843	1/1:27:0,27,0:0:0:27,0:955,0:-86.2637,-8.12781,0,-86.2637,-8.12781,-86.2637	1/2:148:0,72,76:0:0:72,76:2563,2719:-430.963,-222.075,-200.4,-209.245,0,-186.366	1/2:131:0,70,61:0:0:70,61:2489,2188:-381.656,-178.823,-157.751,-203.19,0,-184.827	1/2:76:0,46,29:0:0:46,29:1630,1027:-216.505,-83.7299,-69.8825,-132.846,0,-124.116	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:8:0,8,0:0:0:8,0:286,0:-26.0855,-2.40824,0,-26.0855,-2.40824,-26.0855	.:.:.:.:.:.:.:.	1/1:3:0,3,0:0:0:3,0:100,0:-9.32986,-0.90309,0,-9.32986,-0.90309,-9.32986	.:.:.:.:.:.:.:.	1/1:124:0,124,0:0:0:124,0:4421,0:-398.001,-37.3277,0,-398.001,-37.3277,-398.001	1/1:90:0,89,0:0:0:89,0:3113,0:-280.116,-26.7917,0,-280.116,-26.7917,-280.116	1/1:46:0,46,0:0:0:46,0:1629,0:-146.899,-13.8474,0,-146.899,-13.8474,-146.899	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:101:0,101,0:0:0:101,0:3537,0:-318.539,-30.404,0,-318.539,-30.404,-318.539	1/2:16:0,7,9:0:0:7,9:252,320:-46.9969,-26.4331,-24.3259,-20.9217,0,-18.2125	1/1:47:0,46,0:0:0:46,0:1640,0:-147.542,-13.8474,0,-147.542,-13.8474,-147.542	1/1:37:0,37,0:0:0:37,0:1302,0:-117.479,-11.1381,0,-117.479,-11.1381,-117.479	1/2:42:0,24,18:0:0:24,18:843,644:-121.48,-52.8721,-45.6473,-68.9629,0,-63.5444	1/2:36:0,16,20:0:0:16,20:559,720:-104.576,-59.1082,-54.2917,-45.8214,0,-39.8008	1/1:49:0,49,0:0:0:49,0:1741,0:-156.974,-14.7505,0,-156.974,-14.7505,-156.974	1/2:97:0,53,44:0:0:53,44:1840,1580:-278.814,-129.246,-113.292,-149.922,0,-136.676	1/1:72:0,72,0:0:0:72,0:2550,0:-229.753,-21.6742,0,-229.753,-21.6742,-229.753	1/1:101:0,101,0:0:0:101,0:3524,0:-317.369,-30.404,0,-317.369,-30.404,-317.369	1/1:102:0,102,0:0:0:102,0:3612,0:-325.286,-30.7051,0,-325.286,-30.7051,-325.286	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:61:0,61,0:0:0:61,0:2148,0:-193.587,-18.3628,0,-193.587,-18.3628,-193.587	1/2:14:0,5,8:0:0:5,8:180,288:-38.1864,-23.4993,-21.9942,-14.6871,0,-12.2788	1/2:8:0,5,3:0:0:5,3:178,108:-23.6772,-9.17208,-7.66693,-14.8635,0,-13.9604	1/2:85:0,30,54:0:0:30,54:1060,1944:-245.101,-158.777,-149.747,-86.4734,0,-70.2178	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:6:0,4,2:0:0:4,2:121,72:-15.8787,-6.23466,-5.03054,-9.98471,0,-9.38265	1/1:10:0,10,0:0:0:10,0:355,0:-32.2907,-3.0103,0,-32.2907,-3.0103,-32.2907	1/2:19:0,10,9:0:0:10,9:330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chr05	1049340	.	AAAAC	GAAAC	77051.9	PASS	AB=0.491284;ABP=4.44865;AC=146;AF=0.784946;AN=186;AO=3631;CIGAR=1X4M;DP=4762;DPB=4762.4;DPRA=0;EPP=7887.63;EPPR=2406.83;GTI=0;LEN=1;MEANALT=1.23656;MQM=59.9256;MQMR=59.9765;NS=93;NUMALT=1;ODDS=1.05865;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=16;PQR=0;PRO=1;QA=129941;QR=38916;RO=1107;RPL=3631;RPP=7887.63;RPPR=2406.83;RPR=0;RUN=1;SAF=0;SAP=7887.63;SAR=3631;SRF=0;SRP=2406.83;SRR=1107;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:10,12:10:355:12:428:-32.2357,0,-25.6677	0/1:69:30,38:30:1036:38:1364:-102.377,0,-72.8627	1/1:44:0,44:0:0:44:1543:-138.888,-13.2453,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	0/1:31:17,14:17:580:14:491:-35.1892,0,-43.1876	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:71:39,32:39:1357:32:1143:-81.8056,0,-101.053	1/1:63:1,60:1:36:60:2139:-189.207,-15.1083,0	0/1:71:41,30:41:1415:30:1067:-74.8803,0,-106.254	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:45:0,45:0:0:45:1604:-144.648,-13.5464,0	1/1:44:0,44:0:0:44:1567:-141.316,-13.2453,0	0/1:60:30,30:30:1071:30:1080:-79.3817,0,-78.6403	1/1:73:0,73:0:0:73:2612:-235.283,-21.9752,0	0/1:41:21,20:21:755:20:720:-52.7865,0,-55.9348	1/1:56:0,56:0:0:56:1997:-180.002,-16.8577,0	1/1:61:0,60:0:0:60:2160:-194.407,-18.0618,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:20:0,20:0:0:20:720:-65.1284,-6.0206,0	0/1:97:46,51:46:1640:51:1828:-135.601,0,-118.689	0/1:91:52,39:52:1840:39:1400:-98.9009,0,-138.486	0/1:42:29,13:29:1000:13:460:-29.0921,0,-77.6642	0/1:25:19,6:19:663:6:201:-10.8913,0,-52.4678	1/1:32:1,31:1:35:31:1116:-97.2531,-6.13433,0	0/1:22:15,7:15:539:7:252:-16.4063,0,-42.2235	1/1:131:0,129:0:0:129:4632:-416.727,-38.8329,0	0/1:70:38,32:38:1346:32:1152:-82.918,0,-100.368	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:159:79,79:79:2755:79:2828:-206.836,0,-200.271	0/1:90:43,47:43:1515:47:1684:-124.754,0,-109.549	0/1:68:43,25:43:1484:25:896:-60.4903,0,-113.379	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:244:-22.2417,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:7:2,5:2:71:5:180:-14.4449,0,-4.63485	1/1:137:0,137:0:0:137:4920:-442.949,-41.2411,0	1/1:88:1,86:1:36:86:3084:-274.263,-22.8762,0	1/1:53:0,53:0:0:53:1883:-169.748,-15.9546,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:49:0,49:0:0:49:1737:-156.613,-14.7505,0	0/1:20:10,10:10:350:10:347:-25.543,0,-25.8154	1/1:83:1,81:1:36:81:2908:-258.41,-21.3911,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:33:15,18:15:529:18:648:-48.7179,0,-38.0069	0/1:32:19,13:19:678:13:461:-31.9207,0,-51.7156	1/1:69:0,69:0:0:69:2459:-221.564,-20.7711,0	0/1:80:39,41:39:1368:41:1456:-107.254,0,-99.336	1/1:48:0,45:0:0:45:1616:-145.392,-13.5464,0	1/1:58:0,58:0:0:58:2058:-185.488,-17.4597,0	1/1:81:0,81:0:0:81:2892:-260.517,-24.3834,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	0/1:45:20,25:20:710:25:900:-67.7747,0,-50.6788	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:62:26,35:26:928:35:1256:-94.6227,0,-65.1161	1/1:29:1,28:1:36:28:989:-85.7237,-5.1316,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:9:0,8:0:0:8:288:-25.9786,-2.40824,0	0/1:49:20,28:20:711:28:999:-75.4107,0,-49.5074	1/1:90:0,89:0:0:89:3187:-286.782,-26.7917,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:82:35,46:35:1246:46:1652:-124.264,0,-87.7403	0/1:98:54,44:54:1879:44:1580:-112.991,0,-139.884	0/1:49:23,26:23:813:26:936:-69.809,0,-58.7399	0/1:51:17,34:17:607:34:1216:-94.3755,0,-39.609	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:79:0,79:0:0:79:2825:-254.487,-23.7814,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:53:24,28:24:839:28:995:-73.8504,0,-59.814	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:56:0,56:0:0:56:2004:-180.543,-16.8577,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:96:0,95:0:0:95:3399:-305.814,-28.5979,0	1/1:77:0,76:0:0:76:2723:-244.953,-22.8783,0	0/1:39:14,25:14:488:25:881:-67.8657,0,-32.5086	1/1:44:0,43:0:0:43:1540:-138.611,-12.9443,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:38:21,17:21:742:17:612:-43.9743,0,-55.664	0/1:67:26,41:26:903:41:1472:-112.605,0,-61.4131	1/1:78:0,78:0:0:78:2797:-251.969,-23.4803,0	0/1:60:29,31:29:1028:31:1108:-81.9692,0,-74.7712	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:47:0,46:0:0:46:1656:-149.047,-13.8474,0	0/1:83:43,39:43:1510:39:1396:-100.895,0,-111.147	1/1:31:0,30:0:0:30:1076:-96.7931,-9.0309,0	0/1:57:37,20:37:1312:20:720:-47.9701,0,-101.222	0/1:43:26,17:26:920:17:612:-42.4691,0,-70.1725	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:50:21,29:21:733:29:1036:-78.4991,0,-51.2391	0/1:36:23,13:23:805:13:468:-31.6202,0,-61.9314	1/1:43:0,43:0:0:43:1525:-137.474,-12.9443,0	1/1:68:0,68:0:0:68:2436:-219.467,-20.47,0
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chr05	1086102	.	A	C	36298.3	PASS	AB=0.366368;ABP=245.599;AC=139;AF=0.747312;AN=186;AO=1810;CIGAR=1X;DP=2812;DPB=2812;DPRA=8.80691;EPP=3890.07;EPPR=2139.88;GTI=6;LEN=1;MEANALT=1.02198;MQM=59.3735;MQMR=60;NS=93;NUMALT=1;ODDS=0.409861;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64333;QR=35900;RO=1000;RPL=5;RPP=3890.07;RPPR=2139.88;RPR=1805;RUN=1;SAF=1810;SAP=3933.38;SAR=0;SRF=1000;SRP=2174.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/1:20:12,8:12:428:8:284:-19.8828,0,-32.8382	1/1:57:0,57:0:0:57:2036:-183.488,-17.1587,0	1/1:58:0,58:0:0:58:2055:-185.063,-17.4597,0	0/1:12:7,5:7:252:5:171:-12.1131,0,-19.4166	0/1:5:3,2:3:104:2:68:-4.94396,0,-8.19766	0/1:29:22,7:22:792:7:252:-14.2991,0,-62.8758	1/1:34:0,34:0:0:34:1216:-109.722,-10.235,0	0/1:60:33,27:33:1188:27:949:-67.649,0,-89.1668	1/1:16:0,16:0:0:16:564:-51.0502,-4.81648,0	1/1:25:0,25:0:0:25:884:-79.8499,-7.52575,0	1/1:32:0,32:0:0:32:1144:-103.139,-9.63296,0	0/1:30:19,11:19:684:11:392:-26.5892,0,-52.8594	1/1:16:0,16:0:0:16:568:-51.4047,-4.81648,0	0/1:37:24,13:24:864:13:464:-30.9594,0,-66.9445	1/1:15:0,15:0:0:15:540:-48.9303,-4.51545,0	1/1:9:0,9:0:0:9:315:-28.6586,-2.70927,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:11:0,11:0:0:11:392:-35.6118,-3.31133,0	0/1:35:21,13:21:741:13:464:-31.5029,0,-56.4171	0/1:82:32,50:32:1152:50:1788:-136.518,0,-79.3057	0/1:26:21,5:21:756:5:180:-8.72528,0,-60.5404	0/1:27:23,4:23:824:4:144:-5.18581,0,-66.3555	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/1:30:18,12:18:648:12:424:-29.4539,0,-49.621	1/1:54:1,53:1:36:53:1904:-168.039,-12.6573,0	0/1:99:68,31:68:2444:31:1103:-69.7275,0,-190.413	1/1:15:0,15:0:0:15:528:-47.8112,-4.51545,0	0/1:71:49,22:49:1764:22:771:-48.3372,0,-137.671	0/1:38:29,8:29:1044:8:266:-12.7672,0,-82.7769	0/1:29:22,7:22:788:7:248:-13.9343,0,-62.5149	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:64:0,64:0:0:64:2255:-203.21,-19.2659,0	1/1:30:0,30:0:0:30:1072:-96.6907,-9.0309,0	1/1:17:0,17:0:0:17:599:-54.2381,-5.11751,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:63:1,62:1:36:62:2216:-195.774,-15.3666,0	0/1:30:15,15:15:540:15:514:-37.5529,0,-39.9056	1/1:39:0,39:0:0:39:1388:-125.19,-11.7402,0	1/1:12:0,12:0:0:12:420:-38.134,-3.61236,0	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:58:21,37:21:752:37:1319:-101.525,0,-50.5465	1/1:33:0,33:0:0:33:1172:-105.771,-9.93399,0	0/1:53:34,19:34:1224:19:680:-45.3379,0,-94.5125	1/1:35:0,35:0:0:35:1231:-111.008,-10.5361,0	1/1:31:0,31:0:0:31:1091:-98.4964,-9.33193,0	1/1:17:0,17:0:0:17:612:-55.3571,-5.11751,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:20:0,20:0:0:20:716:-64.7595,-6.0206,0	0/1:39:30,9:30:1060:9:320:-17.4013,0,-83.9711	0/1:10:5,5:5:180:5:171:-12.6787,0,-13.5418	0/1:58:35,23:35:1260:23:813:-55.9544,0,-96.2457	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:5:0,5:0:0:5:180:-16.4949,-1.50515,0	0/1:29:21,8:21:747:8:288:-17.5375,0,-58.8244	1/1:49:1,48:1:36:48:1694:-149.038,-11.1522,0	.:.:.:.:.:.:.:.	0/1:98:68,30:68:2436:30:1068:-66.9302,0,-189.994	0/1:44:22,22:22:792:22:784:-57.6386,0,-58.3604	0/1:37:28,9:28:1008:9:324:-18.3677,0,-79.8982	0/1:23:18,5:18:648:5:180:-9.62837,0,-51.7282	1/1:34:0,34:0:0:34:1208:-108.535,-10.235,0	1/1:32:0,32:0:0:32:1144:-103.232,-9.63296,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:13:0,13:0:0:13:464:-42.0893,-3.91339,0	0/1:40:28,12:28:1008:12:428:-26.8176,0,-78.9952	1/1:12:0,12:0:0:12:428:-38.8136,-3.61236,0	1/1:44:0,44:0:0:44:1572:-141.748,-13.2453,0	1/1:31:0,31:0:0:31:1108:-100.009,-9.33193,0	1/1:27:0,27:0:0:27:963:-86.8985,-8.12781,0	1/1:21:0,21:0:0:21:752:-68.0007,-6.32163,0	0/1:30:19,11:19:676:11:392:-26.5727,0,-52.1371	1/1:29:0,29:0:0:29:1031:-93.1025,-8.72987,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:29:25,4:25:900:4:144:-4.58375,0,-72.5911	0/1:45:30,15:30:1076:15:532:-34.6634,0,-83.6065	1/1:74:0,74:0:0:74:2660:-239.61,-22.2762,0	0/1:45:26,19:26:936:19:675:-47.5306,0,-71.0131	1/1:17:1,16:1:36:16:568:-47.845,-1.51924,0	1/1:9:0,9:0:0:9:320:-29.1414,-2.70927,0	0/1:64:39,25:39:1404:25:869:-58.6266,0,-107.393	1/1:19:0,19:0:0:19:667:-60.3484,-5.71957,0	0/1:35:23,12:23:828:12:428:-28.3228,0,-64.3081	0/1:32:18,14:18:648:14:495:-35.2501,0,-49.0189	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:41:27,14:27:968:14:491:-32.1707,0,-75.0951	0/1:32:23,9:23:828:9:311:-18.6445,0,-65.2112	1/1:27:0,27:0:0:27:968:-87.2767,-8.12781,0	1/1:39:0,39:0:0:39:1378:-123.944,-11.7402,0
chr05	1086107	.	G	A	37391.1	PASS	AB=0.362644;ABP=258.324;AC=139;AF=0.747312;AN=186;AO=1818;CIGAR=1X;DP=2823;DPB=2823;DPRA=8.84144;EPP=3795.95;EPPR=2099.35;GTI=6;LEN=1;MEANALT=1;MQM=59.3284;MQMR=59.9821;NS=93;NUMALT=1;ODDS=0.409955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65006;QR=35965;RO=1005;RPL=18;RPP=3795.95;RPPR=2099.35;RPR=1800;RUN=1;SAF=1818;SAP=3950.75;SAR=0;SRF=1005;SRP=2185.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	1/1:56:0,56:0:0:56:2004:-180.609,-16.8577,0	1/1:59:0,59:0:0:59:2089:-188.11,-17.7608,0	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/1:4:2,2:2:72:2:72:-5.62401,0,-5.6326	0/1:28:21,7:21:752:7:252:-14.6001,0,-59.5774	1/1:36:0,36:0:0:36:1288:-115.881,-10.8371,0	0/1:59:33,26:33:1184:26:917:-64.9694,0,-89.1075	1/1:17:0,17:0:0:17:608:-54.9773,-5.11751,0	1/1:25:0,25:0:0:25:892:-80.5881,-7.52575,0	1/1:32:0,32:0:0:32:1144:-103.139,-9.63296,0	0/1:31:20,11:20:716:11:396:-26.6508,0,-55.4358	1/1:16:0,16:0:0:16:576:-52.1014,-4.81648,0	0/1:38:25,13:25:900:13:468:-31.0205,0,-69.8819	1/1:15:0,15:0:0:15:536:-48.5686,-4.51545,0	1/1:9:0,9:0:0:9:324:-29.4772,-2.70927,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:11:0,11:0:0:11:396:-35.9745,-3.31133,0	0/1:35:22,13:22:788:13:464:-31.5615,0,-60.7087	0/1:79:31,48:31:1112:48:1720:-131.304,0,-76.61	0/1:26:21,5:21:756:5:180:-8.72528,0,-60.5404	0/1:27:23,4:23:805:4:144:-5.18581,0,-64.6397	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/1:30:18,12:18:633:12:428:-29.7993,0,-48.2642	1/1:57:1,56:1:36:56:2000:-176.662,-13.5604,0	0/1:98:67,31:67:2412:31:1107:-70.3889,0,-187.835	1/1:15:1,14:1:36:14:492:-40.9739,-0.917175,0	0/1:70:48,22:48:1713:22:788:-50.1727,0,-133.382	0/1:39:31,8:31:1112:8:288:-14.4985,0,-88.5648	0/1:29:22,7:22:792:7:252:-14.2991,0,-62.8758	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:6,5:6:207:5:180:-13.2407,0,-15.6556	1/1:64:0,64:0:0:64:2300:-207.257,-19.2659,0	1/1:30:0,30:0:0:30:1076:-97.0511,-9.0309,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:64:1,63:1:36:63:2252:-199.029,-15.6676,0	0/1:30:15,15:15:540:15:540:-39.9056,0,-39.9056	1/1:40:0,40:0:0:40:1440:-129.8,-12.0412,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:23:12,11:12:428:11:392:-28.6964,0,-31.9351	0/1:58:21,37:21:726:37:1328:-102.336,0,-48.1962	1/1:33:0,33:0:0:33:1188:-107.212,-9.93399,0	0/1:52:34,18:34:1220:18:648:-42.5814,0,-94.4532	1/1:35:0,35:0:0:35:1241:-111.924,-10.5361,0	1/1:31:0,31:0:0:31:1112:-100.39,-9.33193,0	1/1:17:0,17:0:0:17:612:-55.3008,-5.11751,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:21:0,21:0:0:21:741:-67.0034,-6.32163,0	0/1:38:29,9:29:1040:9:324:-18.0658,0,-82.4752	0/1:10:5,5:5:180:5:180:-13.5053,0,-13.5418	0/1:55:35,20:35:1260:20:720:-48.5152,0,-97.1488	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:5:0,5:0:0:5:180:-16.4949,-1.50515,0	0/1:28:20,8:20:716:8:288:-17.8386,0,-56.3389	1/1:50:1,49:1:36:49:1748:-153.897,-11.4532,0	.:.:.:.:.:.:.:.	0/1:100:70,30:70:2504:30:1068:-66.3282,0,-195.51	0/1:44:22,22:22:773:22:788:-57.9995,0,-56.6442	0/1:37:28,9:28:989:9:324:-18.3677,0,-78.1839	0/1:24:19,5:19:684:5:180:-9.32734,0,-54.6656	1/1:34:0,34:0:0:34:1224:-109.976,-10.235,0	1/1:32:0,32:0:0:32:1152:-103.953,-9.63296,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:13:0,13:0:0:13:441:-40.005,-3.91339,0	0/1:39:27,12:27:968:12:428:-27.1186,0,-75.6972	1/1:13:0,13:0:0:13:468:-42.4145,-3.91339,0	1/1:45:0,45:0:0:45:1604:-144.62,-13.5464,0	1/1:32:0,32:0:0:32:1146:-103.438,-9.63296,0	1/1:28:0,28:0:0:28:1004:-90.5186,-8.42884,0	1/1:21:0,21:0:0:21:752:-68.0021,-6.32163,0	0/1:29:19,10:19:675:10:360:-23.998,0,-52.3471	1/1:28:0,28:0:0:28:1008:-91.0354,-8.42884,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:28:25,3:25:900:3:108:-1.64633,0,-72.8922	0/1:45:31,14:31:1112:14:504:-32.1517,0,-86.845	1/1:72:0,72:0:0:72:2553:-229.984,-21.6742,0	0/1:48:27,21:27:968:21:748:-53.1935,0,-72.9879	1/1:18:1,17:1:36:17:604:-51.0838,-1.82027,0	1/1:9:0,9:0:0:9:324:-29.5049,-2.70927,0	0/1:65:40,25:40:1436:25:892:-60.6583,0,-109.971	1/1:19:0,19:0:0:19:680:-61.523,-5.71957,0	0/1:35:23,12:23:828:12:432:-28.6851,0,-64.3081	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:41:27,14:27:972:14:504:-33.3477,0,-75.4557	0/1:33:24,9:24:860:9:324:-19.5256,0,-67.7878	1/1:27:0,27:0:0:27:964:-86.9158,-8.12781,0	1/1:40:0,40:0:0:40:1427:-128.354,-12.0412,0
chr05	1086119	.	G	A	37111.8	PASS	AB=0.369329;ABP=235.116;AC=139;AF=0.747312;AN=186;AO=1836;CIGAR=1X;DP=2834;DPB=2834;DPRA=8.87598;EPP=3989.83;EPPR=2170.14;GTI=6;LEN=1;MEANALT=1;MQM=59.3333;MQMR=59.982;NS=93;NUMALT=1;ODDS=0.19496;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65829;QR=35590;RO=998;RPL=1836;RPP=3989.83;RPPR=2170.14;RPR=0;RUN=1;SAF=1836;SAP=3989.83;SAR=0;SRF=998;SRP=2170.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:20:12,8:12:432:8:284:-19.8828,0,-33.2006	1/1:57:0,57:0:0:57:2044:-184.215,-17.1587,0	1/1:59:0,59:0:0:59:2116:-190.541,-17.7608,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:5:3,2:3:108:2:72:-5.32298,0,-8.57002	0/1:28:21,7:21:702:7:252:-14.6001,0,-55.0586	1/1:36:0,36:0:0:36:1296:-116.602,-10.8371,0	0/1:59:32,27:32:1129:27:942:-67.317,0,-84.1556	1/1:17:0,17:0:0:17:612:-55.3388,-5.11751,0	1/1:25:0,25:0:0:25:900:-81.2926,-7.52575,0	1/1:31:0,31:0:0:31:1116:-100.621,-9.33193,0	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	1/1:15:0,15:0:0:15:540:-48.8629,-4.51545,0	0/1:38:25,13:25:885:13:468:-31.0205,0,-68.5274	1/1:15:0,15:0:0:15:540:-48.9303,-4.51545,0	1/1:9:0,9:0:0:9:324:-29.4772,-2.70927,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:11:0,11:0:0:11:396:-35.9745,-3.31133,0	0/1:34:21,13:21:756:13:464:-31.8625,0,-58.1322	0/1:82:32,50:32:1144:50:1796:-137.238,0,-78.5851	0/1:26:21,5:21:756:5:180:-8.72528,0,-60.5404	0/1:26:22,4:22:784:4:144:-5.48684,0,-63.0571	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:30:18,12:18:648:12:432:-30.1617,0,-49.621	1/1:56:1,55:1:36:55:1961:-173.16,-13.2594,0	0/1:99:68,31:68:2448:31:1097:-69.1792,0,-190.772	1/1:15:0,15:0:0:15:540:-48.8795,-4.51545,0	0/1:68:46,22:46:1656:22:792:-51.1356,0,-128.858	0/1:39:31,8:31:1078:8:288:-14.4985,0,-85.5811	0/1:28:21,7:21:752:7:252:-14.6001,0,-59.5774	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:66:0,66:0:0:66:2372:-213.733,-19.868,0	1/1:30:0,30:0:0:30:1080:-97.4115,-9.0309,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:64:1,63:1:36:63:2260:-199.732,-15.6676,0	0/1:30:15,15:15:536:15:540:-39.9056,0,-39.5439	1/1:41:0,41:0:0:41:1468:-132.357,-12.3422,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:24:11,13:11:381:13:468:-35.2349,0,-27.3959	0/1:59:21,38:21:741:38:1358:-104.75,0,-49.2508	1/1:33:0,33:0:0:33:1188:-107.212,-9.93399,0	0/1:53:34,19:34:1220:19:681:-45.2699,0,-94.1522	1/1:34:0,34:0:0:34:1224:-110.381,-10.235,0	1/1:31:0,31:0:0:31:1116:-100.749,-9.33193,0	1/1:18:0,18:0:0:18:638:-57.6854,-5.41854,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:21:0,21:0:0:21:752:-67.9981,-6.32163,0	0/1:37:29,8:29:1010:8:284:-14.7643,0,-80.0689	0/1:10:5,5:5:180:5:180:-13.5053,0,-13.5418	0/1:58:35,23:35:1252:23:828:-57.2825,0,-95.5253	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:5:0,5:0:0:5:180:-16.4949,-1.50515,0	0/1:29:21,8:21:756:8:288:-17.5375,0,-59.6374	1/1:50:1,49:1:36:49:1764:-155.319,-11.4532,0	.:.:.:.:.:.:.:.	0/1:100:70,30:70:2497:30:1076:-67.0489,0,-194.878	0/1:44:22,22:22:773:22:788:-57.9995,0,-56.6442	0/1:37:28,9:28:989:9:324:-18.3677,0,-78.1839	0/1:24:19,5:19:680:5:180:-9.32734,0,-54.3044	1/1:34:0,34:0:0:34:1224:-109.976,-10.235,0	1/1:32:0,32:0:0:32:1148:-103.592,-9.63296,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:13:0,13:0:0:13:449:-40.7293,-3.91339,0	0/1:40:28,12:28:1008:12:432:-27.18,0,-78.9952	1/1:13:0,13:0:0:13:464:-42.0523,-3.91339,0	1/1:45:0,45:0:0:45:1605:-144.708,-13.5464,0	1/1:33:0,33:0:0:33:1188:-106.936,-9.93399,0	1/1:28:0,28:0:0:28:1004:-90.5186,-8.42884,0	1/1:21:0,21:0:0:21:756:-68.3616,-6.32163,0	0/1:29:18,11:18:640:11:388:-26.517,0,-49.1994	1/1:29:0,29:0:0:29:1040:-93.914,-8.72987,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:29:25,4:25:900:4:144:-4.58375,0,-72.5911	0/1:46:31,15:31:1101:15:517:-32.999,0,-85.551	1/1:74:0,74:0:0:74:2660:-239.61,-22.2762,0	0/1:48:27,21:27:972:21:756:-53.9154,0,-73.3485	1/1:18:1,17:1:36:17:612:-51.8061,-1.82027,0	1/1:9:0,9:0:0:9:324:-29.5049,-2.70927,0	0/1:65:39,26:39:1396:26:921:-63.5898,0,-106.372	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:35:23,12:23:820:12:432:-28.6851,0,-63.5865	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:41:27,14:27:972:14:504:-33.3477,0,-75.4557	0/1:33:24,9:24:860:9:324:-19.5256,0,-67.7878	1/1:28:0,28:0:0:28:1004:-90.5143,-8.42884,0	1/1:39:0,39:0:0:39:1400:-126.297,-11.7402,0
chr05	1097403	.	G	A	112820	PASS	AB=0.490656;ABP=5.56698;AC=143;AF=0.760638;AN=188;AO=5383;CIGAR=1X;DP=7110;DPB=7110;DPRA=0;EPP=11692;EPPR=3750.97;GTI=0;LEN=1;MEANALT=1.01064;MQM=54.0895;MQMR=40.6553;NS=94;NUMALT=1;ODDS=0.00163373;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192090;QR=61726;RO=1726;RPL=5383;RPP=11692;RPPR=3750.97;RPR=0;RUN=1;SAF=5383;SAP=11692;SAR=0;SRF=1726;SRP=3750.97;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:11,16:11:392:16:561:-42.5549,0,-25.4892	0/1:94:44,50:44:1572:50:1754:-128.115,0,-103.176	1/1:99:0,99:0:0:99:3552:-317.775,-29.802,0	1/1:178:0,178:0:0:178:6338:-569.651,-53.5833,0	0/1:52:25,27:25:885:27:972:-71.085,0,-58.8027	0/1:12:8,4:8:288:4:144:-9.66779,0,-19.4354	0/1:103:57,46:57:2025:46:1648:-117.483,0,-145.708	1/1:166:0,166:0:0:166:5908:-527.567,-49.971,0	0/1:111:53,58:53:1885:58:2076:-152.863,0,-124.568	1/1:81:0,81:0:0:81:2902:-260.955,-24.3834,0	1/1:41:0,41:0:0:41:1472:-132.373,-12.3422,0	1/1:39:0,39:0:0:39:1385:-122.775,-11.7402,0	0/1:36:23,13:23:824:13:464:-30.9494,0,-59.3674	1/1:49:0,49:0:0:49:1733:-155.767,-14.7505,0	0/1:33:17,16:17:603:16:572:-41.7846,0,-42.9409	1/1:38:0,38:0:0:38:1352:-121.816,-11.4391,0	1/1:40:0,40:0:0:40:1412:-126.64,-12.0412,0	1/1:35:0,35:0:0:35:1252:-112.488,-10.5361,0	1/1:15:0,15:0:0:15:540:-48.2651,-4.51545,0	0/1:133:68,65:68:2440:65:2279:-164.488,0,-171.764	0/1:127:61,66:61:2192:66:2368:-174.029,0,-149.809	0/1:87:50,37:50:1792:37:1328:-93.4848,0,-131.587	0/1:39:23,16:23:820:16:572:-39.9528,0,-59.4651	1/1:63:3,60:3:104:60:2126:-181.77,-9.62062,0	0/1:41:29,12:29:1044:12:432:-26.8234,0,-77.5165	1/1:283:0,283:0:0:283:10137:-911.411,-85.1915,0	0/1:190:96,94:96:3425:94:3352:-242.803,0,-236.166	1/1:17:0,17:0:0:17:608:-54.9762,-5.11751,0	0/1:307:165,142:165:5901:142:5047:-361.025,0,-424.008	0/1:101:56,45:56:2012:45:1620:-114.842,0,-143.668	0/1:110:53,57:53:1908:57:2031:-149.457,0,-132.534	0/1:6:4,2:4:144:2:72:-5.02085,0,-10.9754	1/1:18:0,18:0:0:18:633:-56.9698,-5.41854,0	0/1:3:1,2:1:36:2:72:-5.91644,0,-2.48451	1/1:10:0,10:0:0:10:356:-32.3039,-3.0103,0	0/1:6:1,5:1:36:5:180:-14.6986,0,-1.58142	1/1:117:1,116:1:36:116:4164:-370.479,-31.6222,0	1/1:167:0,167:0:0:167:5962:-533.988,-50.272,0	1/1:32:1,31:1:36:31:1100:-95.5013,-6.24536,0	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:89:1,88:1:36:88:3149:-277.913,-23.3372,0	0/1:20:8,12:8:284:12:432:-32.893,0,-18.9067	1/1:92:0,92:0:0:92:3288:-295.207,-27.6948,0	1/1:38:0,38:0:0:38:1364:-122.973,-11.4391,0	0/1:39:19,20:19:671:20:720:-53.3348,0,-47.4123	0/1:71:36,35:36:1296:35:1256:-91.0516,0,-92.6434	1/1:95:0,95:0:0:95:3349:-300.488,-28.5979,0	0/1:173:118,55:118:4239:55:1951:-122.701,0,-314.282	1/1:134:0,134:0:0:134:4810:-431.658,-40.338,0	1/1:121:0,121:0:0:121:4293:-386.185,-36.4246,0	1/1:134:0,134:0:0:134:4765:-427.653,-40.338,0	0/1:14:8,6:8:280:6:216:-15.5618,0,-20.6863	1/1:102:0,102:0:0:102:3648:-326.615,-30.7051,0	0/1:34:18,16:18:644:16:576:-41.9254,0,-47.0754	0/1:17:12,5:12:432:5:180:-11.2074,0,-31.0544	0/1:128:64,64:64:2296:64:2300:-167.756,0,-158.652	1/1:23:0,23:0:0:23:828:-74.7843,-6.92369,0	0/1:11:5,6:5:180:6:216:-16.4736,0,-12.9241	1/1:19:0,19:0:0:19:661:-59.7376,-5.71957,0	0/1:19:10,9:10:356:9:316:-23.0194,0,-25.3962	1/1:93:0,93:0:0:93:3333:-299.523,-27.9958,0	1/1:7:0,7:0:0:7:252:-22.9273,-2.10721,0	0/1:187:87,100:87:3095:100:3592:-266.608,0,-217.343	0/1:182:98,84:98:3498:84:2991:-213.41,0,-249.305	0/1:64:35,29:35:1252:29:1028:-73.3192,0,-89.2608	0/1:86:30,56:30:1076:56:1986:-152.478,0,-67.0776	1/1:142:0,142:0:0:142:5040:-453.074,-42.7463,0	1/1:81:1,80:1:36:80:2856:-253.463,-20.8807,0	1/1:13:0,13:0:0:13:468:-42.2736,-3.91339,0	1/1:59:0,59:0:0:59:2091:-186.731,-17.7608,0	0/1:62:29,33:29:1027:33:1188:-87.8539,0,-71.4826	1/1:21:0,21:0:0:21:730:-65.9176,-6.32163,0	1/1:94:0,94:0:0:94:3364:-300.493,-28.2968,0	1/1:39:0,39:0:0:39:1388:-124.084,-11.7402,0	1/1:95:0,95:0:0:95:3381:-303.796,-28.5979,0	1/1:136:0,136:0:0:136:4858:-436.175,-40.9401,0	0/1:69:31,38:31:1116:38:1348:-100.373,0,-73.0363	1/1:80:1,79:1:36:79:2830:-250.623,-21.5237,0	0/1:9:7,2:7:252:2:72:-4.11026,0,-18.9714	0/1:103:49,54:49:1756:54:1932:-142.741,0,-119.373	0/1:106:39,67:39:1392:67:2389:-182.8,0,-86.3961	1/1:220:0,220:0:0:220:7879:-708.043,-66.2266,0	0/1:75:41,34:41:1464:34:1224:-87.7239,0,-105.843	1/1:38:0,38:0:0:38:1364:-122.087,-11.4391,0	1/1:44:0,44:0:0:44:1580:-142.171,-13.2453,0	0/1:94:40,54:40:1436:54:1936:-145.796,0,-96.0655	1/1:29:1,27:1:36:27:964:-82.8182,-5.18994,0	0/1:57:19,38:19:665:38:1360:-104.79,0,-39.5488	0/1:40:18,22:18:648:22:788:-58.6719,0,-42.0086	1/1:28:0,28:0:0:28:1004:-90.4207,-8.42884,0	0/1:51:21,30:21:747:30:1068:-80.9496,0,-48.7426	0/1:42:30,12:30:1080:12:432:-26.4652,0,-81.6944	1/1:141:0,141:0:0:141:4996:-448.735,-42.4452,0	1/1:43:0,43:0:0:43:1548:-138.777,-12.9443,0
chr05	1097420	.	A	T	26257.5	PASS	AB=0.50847;ABP=5.10692;AC=45;AF=0.239362;AN=188;AO=1723;CIGAR=1X;DP=7069;DPB=7069;DPRA=1.14855;EPP=3744.46;EPPR=11600.8;GTI=0;LEN=1;MEANALT=1.0566;MQM=40.6448;MQMR=54.1683;NS=94;NUMALT=1;ODDS=0.156198;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61039;QR=190245;RO=5341;RPL=1723;RPP=3744.46;RPPR=11592.2;RPR=0;RUN=1;SAF=1723;SAP=3744.46;SAR=0;SRF=5340;SRP=11592.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:14,11:14:500:11:388:-25.8323,0,-37.6892	0/1:96:50,46:50:1788:46:1640:-108.415,0,-131.15	0/0:98:98,0:98:3478:0:0:0,-29.5009,-310.985	0/0:175:175,0:175:6219:0:0:0,-52.6802,-558.874	0/1:52:28,24:28:970:24:855:-56.3145,0,-71.729	0/1:13:5,8:5:180:8:284:-18.8744,0,-12.4116	0/1:100:43,57:43:1518:57:2028:-146.806,0,-106.695	0/0:163:163,0:163:5831:0:0:0,-49.0679,-520.787	0/1:115:62,53:62:2204:53:1874:-123.152,0,-162.911	0/0:83:83,0:83:2944:0:0:0,-24.9855,-264.802	0/0:40:40,0:40:1421:0:0:0,-12.0412,-127.786	0/0:40:40,0:40:1418:0:0:0,-12.0412,-125.743	0/1:36:14,22:14:496:22:788:-56.3185,0,-33.8027	0/0:50:50,0:50:1779:0:0:0,-15.0515,-159.906	0/1:34:16,18:16:567:18:644:-46.2202,0,-40.9599	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.531	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.097	0/0:36:36,0:36:1279:0:0:0,-10.8371,-114.869	0/0:15:15,0:15:536:0:0:0,-4.51545,-47.9083	0/1:133:64,69:64:2296:69:2434:-171.242,0,-166.334	0/1:127:67,60:67:2396:60:2152:-146.727,0,-176.552	0/1:87:35,52:35:1243:52:1840:-135.868,0,-85.8406	0/1:39:18,21:18:636:21:756:-54.8111,0,-45.6998	0/0:62:59,3:59:2108:3:99:0,-9.7264,-180.729	0/1:42:12,30:12:428:30:1068:-79.4014,0,-26.1627	0/0:277:277,0:277:9888:0:0:0,-83.3853,-889.226	0/1:194:98,96:98:3498:96:3380:-231.632,0,-254.175	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.1663	0/1:304:142,161:142:5063:161:5683:-406.962,0,-363.875	0/1:101:44,57:44:1561:57:2006:-142.785,0,-109.745	0/1:115:60,55:60:2144:55:1968:-136.61,0,-157.966	0/1:7:3,4:3:100:4:144:-10.6744,0,-7.21466	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.0339	0/1:3:2,1:2:72:1:36:-2.48451,0,-5.91644	0/0:10:10,0:10:352:0:0:0,-3.0103,-31.9457	0/1:6:5,1:5:176:1:36:-1.58142,0,-14.3365	0/0:120:120,0:120:4279:0:0:0,-36.1236,-384.369	0/0:162:159,2:159:5654:2:72:0,-42.2477,-499.634	0/0:31:30,1:30:1068:1:36:0,-5.94433,-92.6263	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19727	0/0:93:91,2:91:3244:2:72:0,-21.4323,-283.294	0/1:21:12,9:12:428:9:324:-22.0052,0,-32.3028	0/0:93:92,0:92:3275:0:0:0,-27.6948,-293.773	0/0:38:38,0:38:1350:0:0:0,-11.4391,-121.714	0/1:43:21,22:21:738:22:775:-55.3115,0,-53.7448	0/1:68:34,34:34:1191:34:1201:-85.9437,0,-86.9178	0/0:95:95,0:95:3400:0:0:0,-28.5978,-304.819	0/1:171:55,115:55:1951:115:4050:-300.545,0,-123.247	0/0:130:130,0:130:4627:0:0:0,-39.1339,-414.913	0/0:117:117,0:117:4187:0:0:0,-35.2205,-376.572	0/0:125:125,0:125:4460:0:0:0,-37.6287,-401.204	0/1:13:5,8:5:180:8:279:-20.8605,0,-12.6267	0/0:98:98,0:98:3499:0:0:0,-29.5009,-313.408	0/1:33:15,18:15:536:18:639:-46.9399,0,-38.6277	0/1:17:5,12:5:176:12:409:-29.3596,0,-10.8454	0/1:125:62,63:62:2199:63:2221:-153.487,0,-160.026	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4226	0/1:11:6,5:6:216:5:176:-12.6075,0,-16.4737	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.5233	0/1:21:10,11:10:356:11:388:-27.6141,0,-26.0124	0/0:93:93,0:93:3312:0:0:0,-27.9958,-297.753	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.564	0/1:186:100,86:100:3580:86:3044:-213.214,0,-265.522	0/1:184:87,97:87:3099:97:3471:-247.011,0,-222.478	0/1:65:30,35:30:1072:35:1240:-87.4956,0,-76.9639	0/1:84:56,28:56:1977:28:995:-60.6136,0,-152.338	0/0:146:146,0:146:5207:0:0:0,-43.9504,-467.806	0/0:77:76,1:76:2732:1:36:0,-19.6766,-242.343	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.2659	0/0:56:56,0:56:2000:0:0:0,-16.8577,-178.651	0/1:60:31,29:31:1112:29:1023:-71.8193,0,-82.1111	0/0:21:21,0:21:743:0:0:0,-6.32163,-66.9343	0/0:94:94,0:94:3347:0:0:0,-28.2968,-299.091	0/0:37:37,0:37:1324:0:0:0,-11.1381,-118.898	0/0:98:97,0:97:3453:0:0:0,-29.1999,-309.918	0/0:139:138,1:138:4883:1:36:0,-38.3405,-435.001	0/1:66:35,31:35:1252:31:1084:-71.7178,0,-92.6534	0/0:79:78,1:78:2779:1:36:0,-21.2227,-245.405	0/1:9:2,7:2:72:7:252:-18.9714,0,-4.11026	0/1:99:50,49:50:1775:49:1740:-119.229,0,-129.846	0/1:105:67,38:67:2395:38:1336:-82.0919,0,-183.649	0/0:216:215,1:215:7681:1:36:0,-61.5198,-686.924	0/1:74:33,41:33:1184:41:1451:-105.133,0,-84.4299	0/0:36:36,0:36:1274:0:0:0,-10.8371,-114.08	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.171	0/1:93:54,39:54:1924:39:1375:-91.472,0,-145.022	0/0:29:29,0:29:1024:0:0:0,-8.72987,-91.8183	0/1:56:37,19:37:1315:19:676:-40.7652,0,-101.053	0/1:38:20,18:20:704:18:635:-42.1606,0,-51.933	0/0:28:28,0:28:999:0:0:0,-8.42884,-89.9706	0/1:52:31,21:31:1103:21:752:-48.8554,0,-83.7902	0/1:42:12,30:12:428:30:1076:-81.3836,0,-26.1042	0/0:142:142,0:142:5046:0:0:0,-42.7463,-453.597	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.373
chr05	1204602	.	T	G	164143	PASS	AB=0.491667;ABP=5.83321;AC=144;AF=0.765957;AN=188;AO=7758;CIGAR=1X;DP=10159;DPB=10159;DPRA=0;EPP=16849.3;EPPR=5199.34;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.9603;MQMR=59.9716;NS=94;NUMALT=1;ODDS=4.69976;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=276924;QR=85759;RO=2393;RPL=0;RPP=16849.3;RPPR=5199.34;RPR=7758;RUN=1;SAF=7758;SAP=16849.3;SAR=0;SRF=2393;SRP=5199.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:28,38:28:1000:38:1356:-102.473,0,-70.4474	0/1:144:65,79:65:2340:79:2820:-210.668,0,-167.511	1/1:130:0,130:0:0:130:4648:-418.483,-39.1339,0	1/1:268:0,268:0:0:268:9600:-863.951,-80.676,0	0/1:82:39,43:39:1404:43:1546:-114.749,0,-101.975	0/1:60:36,24:36:1284:24:864:-60.0208,0,-97.8016	0/1:210:88,122:88:3144:122:4304:-324.285,0,-219.97	1/1:134:1,132:1:36:132:4698:-419.344,-36.7786,0	0/1:109:38,71:38:1364:71:2514:-193.61,0,-90.2484	1/1:175:0,175:0:0:175:6242:-561.874,-52.6803,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	0/1:74:39,35:39:1389:35:1260:-91.4289,0,-103.031	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	0/1:76:45,31:45:1616:31:1116:-77.8734,0,-122.852	1/1:67:0,67:0:0:67:2412:-217.318,-20.169,0	1/1:65:0,65:0:0:65:2325:-209.508,-19.567,0	1/1:58:0,58:0:0:58:2065:-186.119,-17.4597,0	1/1:50:0,50:0:0:50:1800:-162.265,-15.0515,0	0/1:199:87,111:87:3116:111:3976:-298.067,0,-220.703	0/1:167:71,96:71:2540:96:3437:-259.267,0,-178.579	0/1:121:74,47:74:2644:47:1673:-114.431,0,-201.782	0/1:144:64,80:64:2296:80:2879:-215.997,0,-163.553	1/1:206:8,198:8:288:198:7073:-610.363,-35.7448,0	0/1:90:35,55:35:1252:55:1976:-151.022,0,-85.8924	1/1:312:0,312:0:0:312:11140:-1002.43,-93.9214,0	0/1:181:84,97:84:3016:97:3428:-254.243,0,-217.184	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:318:201,116:201:7204:116:4085:-272.047,0,-552.627	0/1:96:38,58:38:1364:58:2084:-158.931,0,-94.1618	0/1:131:74,57:74:2644:57:2033:-143.788,0,-198.772	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:227:0,227:0:0:227:8129:-731.624,-68.3338,0	1/1:185:0,184:0:0:184:6510:-585.623,-55.3895,0	1/1:84:0,84:0:0:84:3024:-272.389,-25.2865,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:172:3,169:3:108:169:6026:-532.367,-41.702,0	0/1:40:18,22:18:648:22:784:-58.8427,0,-46.6107	1/1:159:0,159:0:0:159:5682:-511.494,-47.8638,0	1/1:62:0,62:0:0:62:2224:-200.407,-18.6639,0	0/1:60:29,31:29:1044:31:1108:-81.9692,0,-76.213	0/1:174:73,101:73:2620:101:3594:-271.285,0,-183.298	1/1:63:0,63:0:0:63:2241:-201.952,-18.9649,0	0/1:188:111,77:111:3980:77:2740:-190.25,0,-301.795	1/1:150:0,150:0:0:150:5350:-481.631,-45.1545,0	1/1:103:0,103:0:0:103:3655:-329.151,-31.0061,0	1/1:235:1,234:1:36:234:8350:-747.908,-67.1438,0	0/1:14:9,5:9:324:5:165:-10.9592,0,-25.2914	1/1:128:0,128:0:0:128:4564:-410.924,-38.5318,0	0/1:94:65,29:65:2340:29:1040:-65.6175,0,-182.562	0/1:18:5,13:5:180:13:464:-36.679,0,-11.1335	0/1:129:75,54:75:2680:54:1894:-131.902,0,-202.613	1/1:104:0,104:0:0:104:3698:-333.013,-31.3071,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	0/1:119:56,62:56:2012:62:2190:-161.481,0,-145.472	1/1:117:1,116:1:36:116:4127:-368.017,-31.6222,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:195:102,92:102:3660:92:3296:-238.097,0,-270.843	0/1:172:83,89:83:2976:89:3177:-234.373,0,-216.295	0/1:80:31,49:31:1112:49:1756:-134.242,0,-76.3089	0/1:93:49,44:49:1760:44:1553:-112.064,0,-130.688	1/1:217:0,217:0:0:217:7693:-692.388,-65.3235,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:111:0,111:0:0:111:3988:-359.109,-33.4143,0	0/1:84:43,41:43:1544:41:1457:-106.137,0,-113.967	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:212:1,211:1:36:211:7560:-676.841,-60.2201,0	1/1:52:0,52:0:0:52:1868:-168.396,-15.6536,0	1/1:171:0,171:0:0:171:6068:-546.204,-51.4761,0	1/1:188:0,188:0:0:188:6694:-602.537,-56.5936,0	0/1:65:28,37:28:993:37:1317:-99.2461,0,-70.1156	1/1:70:3,67:3:108:67:2374:-203.84,-10.9969,0	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	0/1:127:76,51:76:2713:51:1820:-125.85,0,-206.181	0/1:122:60,62:60:2148:62:2220:-163.339,0,-156.862	1/1:322:1,320:1:36:320:11436:-1025.51,-93.3922,0	0/1:109:62,47:62:2224:47:1684:-119.035,0,-166.249	1/1:47:0,47:0:0:47:1673:-150.855,-14.1484,0	1/1:86:0,86:0:0:86:3080:-277.411,-25.8886,0	0/1:137:79,58:79:2828:58:2084:-146.589,0,-213.518	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:94:59,35:59:2116:35:1260:-85.4087,0,-162.412	0/1:70:38,32:38:1364:32:1144:-82.1974,0,-101.989	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:110:49,61:49:1752:61:2188:-164.072,0,-124.851	0/1:57:40,16:40:1436:16:576:-35.0985,0,-112.466	1/1:167:0,167:0:0:167:5996:-539.701,-50.272,0	1/1:107:0,107:0:0:107:3840:-345.776,-32.2102,0
chr05	1211096	.	G	A	69701.1	PASS	AB=0.591195;ABP=140.837;AC=136;AF=0.755556;AN=180;AO=3282;CIGAR=1X;DP=4068;DPB=4068;DPRA=45.6966;EPP=7129.78;EPPR=1709.79;GTI=4;LEN=1;MEANALT=1;MQM=59.9714;MQMR=60;NS=90;NUMALT=1;ODDS=1.63699;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117381;QR=28057;RO=786;RPL=0;RPP=7129.78;RPPR=1709.79;RPR=3282;RUN=1;SAF=3282;SAP=7129.78;SAR=0;SRF=786;SRP=1709.79;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:6,14:6:212:14:496:-38.9537,0,-13.4042	0/1:37:16,21:16:553:21:756:-57.2291,0,-38.9559	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:96:0,96:0:0:96:3429:-308.822,-28.8989,0	0/1:27:13,14:13:464:14:500:-37.2084,0,-33.9697	0/1:24:5,19:5:180:19:676:-53.9433,0,-9.32734	0/1:42:26,16:26:921:16:576:-39.5317,0,-70.5619	1/1:36:3,33:3:108:33:1184:-96.7931,-0.76191,0	0/1:59:20,39:20:705:39:1396:-108.178,0,-46.012	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:71:0,71:0:0:71:2556:-230.29,-21.3731,0	0/1:33:20,13:20:716:13:468:-32.5257,0,-54.8337	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:100:25,75:25:900:75:2688:-212.062,0,-51.218	0/1:74:31,43:31:1112:43:1521:-114.905,0,-78.1151	0/1:46:27,19:27:972:19:680:-47.6818,0,-73.9505	0/1:74:23,51:23:828:51:1832:-142.885,0,-52.5679	0/1:32:4,28:4:144:28:1008:-81.4034,0,-3.68066	0/1:52:26,26:26:924:26:936:-68.9059,0,-67.8241	1/1:130:0,130:0:0:130:4665:-420.008,-39.1339,0	0/1:112:45,67:45:1599:67:2365:-179.39,0,-110.484	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:104:30,74:30:1080:74:2614:-204.199,0,-66.2061	0/1:58:20,38:20:716:38:1351:-104.43,0,-47.308	0/1:56:14,42:14:504:42:1504:-118.797,0,-28.8404	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:94:0,94:0:0:94:3371:-303.605,-28.2968,0	1/1:62:1,61:1:36:61:2183:-192.819,-15.0656,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	.:.:.:.:.:.:.:.	1/1:68:1,67:1:36:67:2385:-211.308,-16.8718,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:40:24,16:24:839:16:572:-39.7722,0,-63.7861	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	0/1:76:27,49:27:972:49:1764:-136.165,0,-64.9196	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:115:0,115:0:0:115:4117:-370.713,-34.6185,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:48:22,26:22:792:26:928:-69.3888,0,-57.1562	1/1:39:0,39:0:0:39:1404:-126.657,-11.7402,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:41:11,30:11:392:30:1072:-84.4502,0,-23.2778	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:76:35,41:35:1241:41:1460:-108.818,0,-89.1142	0/1:64:31,33:31:1108:33:1180:-87.2421,0,-80.7651	0/1:53:20,33:20:716:33:1184:-90.9137,0,-48.8131	0/1:27:7,20:7:252:20:705:-55.645,0,-14.9011	1/1:81:0,81:0:0:81:2893:-260.605,-24.3834,0	1/1:128:0,128:0:0:128:4588:-413.084,-38.5318,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:38:0,38:0:0:38:1349:-121.708,-11.4391,0	0/1:38:16,22:16:567:22:792:-60.1665,0,-39.9216	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:87:0,87:0:0:87:3093:-278.597,-26.1896,0	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	1/1:89:0,89:0:0:89:3185:-286.872,-26.7917,0	0/1:26:10,16:10:360:16:568:-43.6251,0,-24.9175	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:47:17,30:17:608:30:1076:-83.0044,0,-40.9036	0/1:31:8,23:8:288:23:828:-65.5122,0,-16.9355	1/1:89:0,89:0:0:89:3163:-284.763,-26.7917,0	0/1:55:28,27:28:992:27:964:-70.5202,0,-73.0377	1/1:28:0,28:0:0:28:1008:-91.034,-8.42884,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:77:34,43:34:1208:43:1540:-115.714,0,-85.8468	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:48:28,20:28:1004:20:708:-49.5584,0,-76.2264	0/1:38:20,18:20:720:18:644:-46.8515,0,-53.6896	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	0/1:32:24,8:24:856:8:288:-16.6344,0,-67.7281	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:51:0,51:0:0:51:1817:-163.81,-15.3525,0
chr05	1223250	.	G	A	46271.1	PASS	AB=0.514851;ABP=13.0722;AC=43;AF=0.228723;AN=188;AO=2731;CIGAR=1X;DP=11117;DPB=11117;DPRA=1.31378;EPP=5924.62;EPPR=18206.5;GTI=1;LEN=1;MEANALT=1.0566;MQM=59.9985;MQMR=59.9952;NS=94;NUMALT=1;ODDS=0.851156;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97704;QR=298881;RO=8383;RPL=2731;RPP=5933.3;RPPR=18206.5;RPR=0;RUN=1;SAF=1;SAP=5924.62;SAR=2730;SRF=0;SRP=18206.5;SRR=8383;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:15,29:15:540:29:1040:-80.669,0,-35.6912	0/1:167:87,80:87:3116:80:2859:-207.275,0,-230.395	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.432	0/0:215:215,0:215:7669:0:0:0,-64.7214,-690.247	0/1:89:36,53:36:1288:53:1900:-144.486,0,-89.4319	0/1:61:32,29:32:1139:29:1025:-74.1979,0,-84.4556	0/1:191:92,99:92:3272:99:3548:-262.031,0,-237.205	0/0:144:143,1:143:5066:1:36:0,-39.75,-452.489	0/1:135:58,77:58:2076:77:2748:-206.923,0,-146.471	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/0:83:83,0:83:2962:0:0:0,-24.9855,-266.812	0/0:106:106,0:106:3748:0:0:0,-31.9092,-337.522	0/1:84:34,50:34:1211:50:1792:-136.276,0,-84.009	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/1:108:45,63:45:1607:63:2251:-170.341,0,-112.408	0/0:83:83,0:83:2948:0:0:0,-24.9855,-265.555	0/0:82:82,0:82:2924:0:0:0,-24.6845,-263.396	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:300:158,142:158:5640:142:5084:-367.395,0,-417.414	0/1:186:88,98:88:3124:98:3490:-258.32,0,-225.397	0/1:109:43,66:43:1548:66:2360:-179.846,0,-106.801	0/1:117:63,54:63:2243:54:1940:-139.656,0,-166.913	0/0:159:148,11:148:5304:11:396:0,-11.881,-441.511	0/1:128:65,63:65:2301:63:2264:-165.49,0,-168.818	0/0:406:404,2:404:14367:2:72:0,-115.381,-1285.69	0/1:330:172,158:172:6108:158:5659:-410.089,0,-450.485	0/0:60:60,0:60:2134:0:0:0,-18.0618,-192.327	0/1:344:184,160:184:6580:160:5733:-412.53,0,-488.725	0/1:136:71,65:71:2540:65:2332:-169.199,0,-187.911	0/1:116:46,70:46:1644:70:2503:-190.602,0,-113.329	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	0/0:237:237,0:237:8460:0:0:0,-71.3441,-761.403	0/0:226:226,0:226:8084:0:0:0,-68.0328,-727.579	0/0:97:94,3:94:3358:3:108:0,-19.1247,-292.361	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:202:200,2:200:7172:2:68:0,-54.3503,-639.077	0/1:49:18,31:18:644:31:1108:-85.28,0,-43.5401	0/0:151:151,0:151:5384:0:0:0,-45.4555,-484.694	0/0:107:107,0:107:3819:0:0:0,-32.2102,-343.908	0/1:89:45,44:45:1580:44:1580:-115.7,0,-115.696	0/1:160:72,88:72:2571:88:3137:-234.39,0,-183.474	0/0:160:160,0:160:5698:0:0:0,-48.1648,-512.941	0/1:181:90,90:90:3207:90:3208:-234.544,0,-234.456	0/0:124:123,1:123:4388:1:36:0,-33.7294,-391.497	0/0:162:160,2:160:5693:2:57:0,-43.3535,-507.075	0/0:212:212,0:212:7566:0:0:0,-63.8184,-680.981	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:157:157,0:157:5596:0:0:0,-47.2617,-503.763	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/1:39:25,14:25:887:14:504:-33.9579,0,-68.4079	0/1:148:63,85:63:2235:85:3031:-228.468,0,-156.861	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:82:35,47:35:1252:47:1674:-126.262,0,-88.3006	0/0:133:133,0:133:4743:0:0:0,-40.037,-427.03	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:192:108,83:108:3841:83:2956:-208.563,0,-288.179	0/1:238:122,116:122:4352:116:4158:-302.755,0,-320.211	0/1:70:36,34:36:1280:34:1208:-87.9529,0,-94.4311	0/1:93:49,44:49:1748:44:1584:-114.856,0,-129.608	0/0:219:217,2:217:7738:2:72:0,-59.0888,-689.619	0/0:93:93,0:93:3327:0:0:0,-27.9958,-299.647	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:81:81,0:81:2874:0:0:0,-24.3834,-258.897	0/1:90:40,50:40:1436:50:1783:-133.659,0,-102.445	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:136:136,0:136:4852:0:0:0,-40.9401,-436.836	0/0:204:204,0:204:7263:0:0:0,-61.4101,-653.725	0/0:131:131,0:131:4688:0:0:0,-39.4349,-422.081	0/1:136:52,84:52:1860:84:3016:-230.73,0,-126.74	0/0:127:125,1:125:4464:1:36:0,-34.6164,-398.407	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:131:70,61:70:2499:61:2192:-158.11,0,-185.727	0/1:130:53,77:53:1900:77:2764:-209.867,0,-132.144	0/0:270:270,0:270:9575:0:0:0,-81.2781,-861.702	0/1:130:65,65:65:2324:65:2336:-171.365,0,-170.286	0/0:100:100,0:100:3570:0:0:0,-30.103,-321.507	0/0:102:102,0:102:3630:0:0:0,-30.7051,-326.906	0/1:192:93,99:93:3314:99:3542:-261.187,0,-240.68	0/0:56:56,0:56:1990:0:0:0,-16.8577,-179.373	0/1:103:45,58:45:1591:58:2088:-157.184,0,-112.473	0/1:104:55,49:55:1954:49:1747:-126.207,0,-144.827	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:92:47,45:47:1680:45:1620:-118.395,0,-123.792	0/1:83:30,53:30:1041:53:1871:-143.681,0,-69.0117	0/0:105:103,2:103:3638:2:72:0,-24.7714,-320.789	0/0:130:130,0:130:4631:0:0:0,-39.1339,-416.952
chr05	1252649	.	T	C	112398	PASS	AB=0.503745;ABP=3.38435;AC=140;AF=0.752688;AN=186;AO=5290;CIGAR=1X;DP=6829;DPB=6829;DPRA=37.1033;EPP=11490.1;EPPR=3340.56;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9775;MQMR=59.9662;NS=93;NUMALT=1;ODDS=3.92328;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189077;QR=55030;RO=1537;RPL=0;RPP=11490.1;RPPR=3340.56;RPR=5290;RUN=1;SAF=5290;SAP=11490.1;SAR=0;SRF=1537;SRP=3340.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/1:103:54,49:54:1936:49:1752:-126.958,0,-143.51	1/1:126:0,126:0:0:126:4492:-404.437,-37.9298,0	1/1:166:1,165:1:36:165:5912:-528.427,-46.3727,0	0/1:23:8,15:8:288:15:540:-42.0128,0,-19.3437	0/1:34:18,16:18:644:16:572:-41.5784,0,-48.0556	0/1:62:24,38:24:864:38:1353:-103.405,0,-59.4187	1/1:127:0,127:0:0:127:4536:-408.408,-38.2308,0	0/1:44:27,17:27:972:17:600:-41.0839,0,-74.551	1/1:97:0,97:0:0:97:3455:-311.162,-29.1999,0	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	0/1:56:29,27:29:1044:27:972:-70.9402,0,-77.4125	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:44:20,24:20:716:24:856:-64.1158,0,-51.5224	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:64:0,64:0:0:64:2296:-206.711,-19.2659,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:126:73,53:73:2613:53:1892:-132.628,0,-197.486	0/1:86:44,42:44:1576:42:1504:-109.766,0,-116.243	0/1:56:30,26:30:1053:26:920:-66.2594,0,-78.2209	0/1:20:8,12:8:284:12:424:-32.4758,0,-19.8828	1/1:60:2,58:2:68:58:2064:-179.574,-11.6041,0	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	1/1:266:0,265:0:0:265:9488:-853.514,-79.773,0	0/1:147:76,71:76:2724:71:2532:-183.88,0,-201.152	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:182:86,96:86:3072:96:3427:-253.853,0,-221.922	0/1:212:101,111:101:3628:111:3988:-295.29,0,-262.906	0/1:123:73,50:73:2620:50:1792:-124.536,0,-199.021	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:149:1,148:1:36:148:5305:-473.986,-41.2552,0	1/1:160:0,160:0:0:160:5705:-513.569,-48.1648,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:108:0,108:0:0:108:3856:-347.237,-32.5112,0	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	1/1:71:0,71:0:0:71:2501:-225.343,-21.3731,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:51:26,25:26:920:25:896:-65.6078,0,-67.7645	0/1:68:36,32:36:1288:32:1132:-81.7185,0,-95.7535	1/1:108:0,108:0:0:108:3880:-349.393,-32.5112,0	0/1:151:75,76:75:2696:76:2716:-199.228,0,-197.428	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	1/1:174:0,174:0:0:174:6176:-555.941,-52.3792,0	1/1:124:0,124:0:0:124:4417:-397.703,-37.3277,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:110:0,110:0:0:110:3940:-354.792,-33.1133,0	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:23:14,9:14:500:9:320:-22.2187,0,-38.4125	0/1:104:47,57:47:1680:57:2048:-153.284,0,-120.18	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:50:35,15:35:1248:15:540:-33.885,0,-97.5652	1/1:83:2,81:2:72:81:2916:-255.837,-18.1488,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:219:107,112:107:3828:112:3992:-293.546,0,-278.791	0/1:210:90,120:90:3212:120:4295:-323.511,0,-226.087	0/1:62:18,44:18:644:44:1573:-123.198,0,-39.6267	0/1:69:41,28:41:1476:28:1000:-69.5159,0,-112.047	1/1:133:0,133:0:0:133:4748:-427.469,-40.037,0	1/1:71:3,68:3:108:68:2424:-208.341,-11.298,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:50:0,50:0:0:50:1788:-161.194,-15.0515,0	0/1:58:26,32:26:932:32:1152:-86.5295,0,-66.7391	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:83:0,83:0:0:83:2976:-268.064,-24.9855,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	1/1:109:0,109:0:0:109:3902:-351.373,-32.8123,0	1/1:168:0,167:0:0:167:5961:-536.238,-50.272,0	0/1:48:16,32:16:576:32:1148:-89.1804,0,-37.7117	1/1:121:1,120:1:36:120:4281:-381.87,-32.8264,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:88:33,55:33:1184:55:1968:-150.904,0,-80.3777	0/1:60:36,24:36:1292:24:860:-59.66,0,-98.522	1/1:118:0,118:0:0:118:4211:-379.172,-35.5215,0	0/1:81:42,39:42:1508:39:1385:-100.563,0,-111.631	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:70:0,70:0:0:70:2497:-224.981,-21.0721,0	0/1:111:50,61:50:1792:61:2173:-162.421,0,-128.148	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:46:27,19:27:960:19:676:-47.3206,0,-72.8689	0/1:49:22,27:22:788:27:968:-72.6869,0,-56.4943	1/1:27:0,27:0:0:27:964:-87.0763,-8.12781,0	0/1:61:39,22:39:1388:22:788:-52.882,0,-106.856	0/1:41:22,19:22:784:19:680:-49.1869,0,-58.5417	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	1/1:80:1,79:1:36:79:2844:-252.599,-20.4841,0
chr05	1252653	.	A	T	25034.4	PASS	AB=0.489403;ABP=6.00165;AC=46;AF=0.247312;AN=186;AO=1517;CIGAR=1X;DP=6872;DPB=6872;DPRA=1.20296;EPP=3297.13;EPPR=11616;GTI=1;LEN=1;MEANALT=1.09259;MQM=59.9433;MQMR=59.9792;NS=93;NUMALT=1;ODDS=3.05857;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54294;QR=190770;RO=5348;RPL=0;RPP=3297.13;RPPR=11616;RPR=1517;RUN=1;SAF=1517;SAP=3297.13;SAR=0;SRF=5348;SRP=11616;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:106:51,55:51:1813:55:1972:-145.846,0,-131.54	0/0:127:127,0:127:4534:0:0:0,-38.2308,-408.211	0/0:166:165,1:165:5890:1:36:0,-46.3727,-526.447	0/1:25:16,9:16:561:9:324:-21.9801,0,-43.2914	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:64:39,25:39:1392:25:892:-61.3338,0,-106.313	0/0:125:125,0:125:4434:0:0:0,-37.6287,-399.232	0/1:43:17,26:17:612:26:932:-71.253,0,-42.4691	0/0:98:98,0:98:3478:0:0:0,-29.5009,-313.23	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:55:27,28:27:968:28:1004:-74.1146,0,-70.8807	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:44:24,20:24:864:20:720:-51.8835,0,-64.8372	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.174	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/1:125:54,71:54:1932:71:2556:-192.661,0,-136.528	0/1:90:45,45:45:1616:45:1605:-116.708,0,-118.637	0/1:57:26,31:26:932:31:1116:-83.593,0,-67.0402	0/1:19:12,7:12:428:7:252:-17.3094,0,-33.1392	0/0:61:59,2:59:2090:2:68:0,-11.9051,-181.909	0/1:18:12,6:12:402:6:216:-14.372,0,-31.0807	0/0:267:266,1:266:9552:1:36:0,-76.7767,-856.029	0/1:144:70,74:70:2520:74:2647:-195.128,0,-183.703	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/1:183:97,85:97:3465:85:3036:-218.333,0,-256.923	0/1:209:109,99:109:3893:99:3556:-257.273,0,-287.589	0/1:122:51,71:51:1813:71:2537:-191.854,0,-126.724	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/0:149:148,1:148:5316:1:33:0,-41.5543,-475.273	0/0:161:160,0:160:5658:0:0:0,-48.1648,-508.977	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:110:110,0:110:3895:0:0:0,-33.1133,-350.742	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.229	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:50:25,25:25:900:25:896:-65.9089,0,-66.2695	0/1:68:34,34:34:1212:34:1197:-87.5634,0,-88.9163	0/0:110:110,0:110:3880:0:0:0,-33.1133,-349.392	0/1:150:75,75:75:2666:75:2696:-197.729,0,-195.028	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.425	0/0:178:175,1:175:6219:1:36:0,-49.7262,-556.241	0/0:129:129,0:129:4598:0:0:0,-38.8329,-413.983	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:110:110,0:110:3918:0:0:0,-33.1133,-352.811	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/1:23:9,14:9:320:14:500:-38.4125,0,-22.2187	0/1:102:57,45:57:2040:45:1612:-114.665,0,-153.167	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:48:13,35:13:468:35:1222:-95.8303,0,-28.0102	0/0:88:86,2:86:3069:2:72:0,-19.6539,-269.601	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:215:112,103:112:4001:103:3681:-266.77,0,-295.557	0/1:212:123,89:123:4412:89:3180:-222.606,0,-333.433	0/1:61:42,19:42:1497:19:677:-42.8955,0,-116.66	0/1:69:29,40:29:1036:40:1412:-106.473,0,-72.7544	0/0:136:136,0:136:4831:0:0:0,-40.9401,-434.926	0/0:73:70,3:70:2499:3:108:0,-11.9,-215.087	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/1:58:33,25:33:1188:25:896:-63.5006,0,-89.7679	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:83:83,0:83:2954:0:0:0,-24.9855,-266.083	0/0:73:73,0:73:2563:0:0:0,-21.9752,-230.917	0/0:112:111,0:111:3980:0:0:0,-33.4143,-358.089	0/0:168:168,0:168:6002:0:0:0,-50.573,-540.283	0/1:48:32,16:32:1113:16:576:-37.7117,0,-86.0229	0/0:124:123,1:123:4389:1:36:0,-33.7294,-391.585	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:91:58,33:58:2039:33:1188:-79.8349,0,-156.383	0/1:63:25,38:25:881:38:1368:-104.456,0,-60.641	0/0:118:117,1:117:4158:1:31:0,-32.4221,-371.303	0/1:78:40,38:40:1428:38:1364:-99.5804,0,-105.337	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:108:59,49:59:2116:49:1756:-125.813,0,-158.198	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:47:19,27:19:684:27:968:-73.2302,0,-47.6831	0/1:49:27,22:27:968:22:792:-56.8552,0,-72.6869	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:61:22,39:22:788:39:1400:-107.936,0,-52.882	0/1:42:21,21:21:752:21:756:-55.724,0,-55.363	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076
chr05	1252764	.	T	C	110156	PASS	AB=0.524626;ABP=19.9083;AC=142;AF=0.763441;AN=186;AO=5521;CIGAR=1X;DP=7064;DPB=7064;DPRA=0;EPP=11991.7;EPPR=3344.91;GTI=0;LEN=1;MEANALT=1.04301;MQM=40.9444;MQMR=54.7784;NS=93;NUMALT=1;ODDS=1.87354;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196905;QR=54905;RO=1539;RPL=0;RPP=11991.7;RPPR=3344.91;RPR=5521;RUN=1;SAF=0;SAP=11991.7;SAR=5521;SRF=0;SRP=3344.91;SRR=1539;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:21,20:21:748:20:716:-51.0675,0,-55.1619	0/1:57:41,16:41:1460:16:568:-31.5366,0,-114.421	1/1:153:0,153:0:0:153:5458:-476.881,-46.0576,0	1/1:199:0,199:0:0:199:7081:-613.905,-59.905,0	0/1:25:7,18:7:252:18:644:-49.213,0,-15.4866	0/1:42:21,21:21:737:21:756:-54.0471,0,-53.9608	0/1:108:41,67:41:1456:67:2389:-172.079,0,-98.4111	1/1:87:0,87:0:0:87:3116:-271.388,-26.1896,0	0/1:96:50,46:50:1792:46:1644:-114.122,0,-132.294	1/1:71:0,71:0:0:71:2517:-218.137,-21.3731,0	1/1:48:0,48:0:0:48:1719:-150.074,-14.4494,0	1/1:61:0,61:0:0:61:2141:-186.266,-18.3628,0	0/1:77:29,48:29:1044:48:1704:-124.45,0,-71.0532	1/1:51:0,51:0:0:51:1821:-159.802,-15.3525,0	0/1:54:29,24:29:1032:24:852:-57.536,0,-76.4888	1/1:34:0,34:0:0:34:1212:-104.851,-10.235,0	1/1:32:0,32:0:0:32:1129:-99.7879,-9.63296,0	1/1:32:1,31:1:32:31:1112:-94.4477,-6.43433,0	1/1:30:0,30:0:0:30:1065:-93.7343,-9.0309,0	0/1:117:53,64:53:1904:64:2269:-161.737,0,-135.748	0/1:140:84,56:84:2981:56:1993:-130.84,0,-225.878	0/1:60:37,22:37:1324:22:779:-49.8772,0,-100.97	0/1:111:49,62:49:1732:62:2198:-155.199,0,-122.558	1/1:48:3,45:3:108:45:1616:-130.257,-4.38154,0	0/1:53:15,38:15:540:38:1364:-102.794,0,-32.93	1/1:207:0,207:0:0:207:7392:-640.077,-62.3132,0	0/1:222:97,125:97:3460:125:4492:-324.903,0,-244.386	1/1:28:0,28:0:0:28:998:-87.7027,-8.42884,0	0/1:190:80,110:80:2876:110:3925:-279.254,0,-201.408	0/1:116:66,50:66:2353:50:1785:-118.918,0,-175.452	0/1:125:54,71:54:1919:71:2528:-182.619,0,-134.518	0/1:11:3,8:3:108:8:288:-22.2751,0,-6.75657	1/1:13:0,13:0:0:13:468:-40.7873,-3.91339,0	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:392:-34.8881,-3.31133,0	0/1:8:4,4:4:144:4:144:-10.6195,0,-10.899	1/1:146:0,146:0:0:146:5236:-452.303,-43.9504,0	1/1:117:0,117:0:0:117:4149:-360.322,-35.2205,0	1/1:33:0,33:0:0:33:1179:-103.1,-9.93399,0	1/1:2:0,2:0:0:2:72:-6.65513,-0.60206,0	1/1:103:3,100:3:104:100:3574:-300.425,-21.3461,0	0/1:25:10,15:10:360:15:540:-39.567,0,-25.1278	1/1:116:0,116:0:0:116:4129:-359.797,-34.9195,0	1/1:46:0,46:0:0:46:1641:-141.376,-13.8474,0	0/1:28:18,10:18:644:10:360:-20.9932,0,-49.8034	0/1:102:27,75:27:956:75:2688:-200.613,0,-55.2905	1/1:85:0,85:0:0:85:3056:-268.639,-25.5876,0	0/1:73:38,35:38:1352:35:1251:-86.1632,0,-99.7837	1/1:90:0,90:0:0:90:3223:-277.454,-27.0927,0	1/1:96:0,96:0:0:96:3402:-293.633,-28.8989,0	1/1:113:0,113:0:0:113:4021:-344.843,-34.0164,0	0/1:7:4,3:4:144:3:108:-7.67636,0,-11.1927	1/1:99:0,99:0:0:99:3548:-308.018,-29.802,0	0/1:72:36,36:36:1284:36:1288:-90.0892,0,-94.0265	0/1:6:4,2:4:144:2:72:-4.2964,0,-11.4999	0/1:120:62,58:62:2212:58:2084:-143.09,0,-162.51	1/1:46:0,46:0:0:46:1631:-140.226,-13.8474,0	0/1:5:2,3:2:72:3:108:-8.2408,0,-5.32188	1/1:19:0,19:0:0:19:669:-58.6142,-5.71957,0	0/1:89:44,45:44:1564:45:1595:-112.107,0,-114.032	1/1:93:0,93:0:0:93:3263:-279.868,-27.9958,0	1/1:7:0,7:0:0:7:252:-22.2764,-2.10721,0	0/1:153:68,84:68:2425:84:2998:-212.819,0,-172.132	0/1:138:66,72:66:2341:72:2584:-183.869,0,-168.111	0/1:48:21,27:21:756:27:963:-69.3482,0,-53.7843	0/1:58:30,28:30:1068:28:1000:-68.846,0,-78.6732	1/1:146:4,142:4:140:142:5065:-425.142,-31.0175,0	1/1:139:0,139:0:0:139:4992:-430.597,-41.8432,0	1/1:28:0,28:0:0:28:1000:-87.3295,-8.42884,0	1/1:46:0,46:0:0:46:1652:-144.479,-13.8474,0	0/1:37:20,17:20:701:17:604:-41.8628,0,-52.1756	1/1:13:0,13:0:0:13:464:-40.2706,-3.91339,0	1/1:118:1,117:1:36:117:4156:-356.444,-31.925,0	1/1:71:0,70:0:0:70:2495:-219.049,-21.0721,0	1/1:163:0,163:0:0:163:5801:-503.951,-49.0679,0	1/1:132:0,132:0:0:132:4706:-407.571,-39.736,0	0/1:35:15,20:15:540:20:716:-52.7154,0,-38.3627	1/1:55:5,50:5:180:50:1785:-137.973,-0.012452,0	0/1:11:10,1:10:352:1:36:-0.209679,0,-28.6938	0/1:64:32,32:32:1140:32:1144:-79.8916,0,-83.2811	0/1:113:51,62:51:1828:62:2208:-158.819,0,-130.418	1/1:177:0,177:0:0:177:6294:-543.017,-53.2823,0	0/1:52:24,28:24:864:28:992:-69.7374,0,-61.9595	1/1:66:0,66:0:0:66:2324:-202.575,-19.868,0	1/1:49:0,49:0:0:49:1747:-151.821,-14.7505,0	0/1:94:40,54:40:1432:54:1932:-138.742,0,-100.561	1/1:29:0,29:0:0:29:1028:-89.8534,-8.72987,0	0/1:59:30,29:30:1072:29:1044:-73.7003,0,-78.9726	0/1:41:19,22:19:680:22:780:-56.0525,0,-49.1455	1/1:45:0,45:0:0:45:1602:-139.871,-13.5464,0	0/1:71:34,37:34:1224:37:1312:-93.0573,0,-89.0142	0/1:54:36,18:36:1288:18:640:-38.7668,0,-99.7127	1/1:166:0,166:0:0:166:5944:-512.063,-49.971,0	1/1:97:0,97:0:0:97:3483:-299.76,-29.1999,0
chr05	1304756	.	C	A	95034	PASS	AB=0.471648;ABP=21.234;AC=137;AF=0.744565;AN=184;AO=4219;CIGAR=1X;DP=5625;DPB=5625;DPRA=19.6224;EPP=7835.44;EPPR=3023.55;GTI=0;LEN=1;MEANALT=1.07955;MQM=59.978;MQMR=59.9807;NS=92;NUMALT=1;ODDS=2.4881;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151045;QR=49973;RO=1399;RPL=4060;RPP=7835.44;RPPR=3023.55;RPR=159;RUN=1;SAF=0;SAP=9164.45;SAR=4219;SRF=0;SRP=3040.9;SRR=1399;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:20,9:20:720:9:324:-20.776,0,-56.3989	0/1:60:33,27:33:1169:27:968:-69.3756,0,-87.4535	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	0/1:35:18,17:18:644:17:608:-44.516,0,-47.7545	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:46:27,19:27:968:19:684:-48.0429,0,-73.59	1/1:60:2,58:2:72:58:2065:-179.282,-11.2251,0	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7755	1/1:49:0,48:0:0:48:1728:-155.485,-14.4494,0	1/1:64:0,64:0:0:64:2272:-204.74,-19.2659,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:41:19,22:19:676:22:783:-58.4507,0,-48.8258	1/1:107:0,107:0:0:107:3833:-345.166,-32.2102,0	0/1:52:24,28:24:860:28:1000:-74.6618,0,-62.0683	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:79:0,79:0:0:79:2831:-255.028,-23.7814,0	1/1:35:0,35:0:0:35:1252:-112.795,-10.5361,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:89:54,35:54:1936:35:1256:-86.5536,0,-147.725	0/1:124:54,70:54:1932:70:2508:-188.645,0,-136.829	0/1:64:46,18:46:1656:18:648:-39.386,0,-130.062	0/1:95:63,32:63:2237:32:1144:-74.6717,0,-172.994	1/1:38:2,36:2:72:36:1296:-110.107,-4.60242,0	0/1:51:27,24:27:957:24:864:-62.73,0,-71.0762	1/1:245:0,245:0:0:245:8784:-790.546,-73.7524,0	0/1:115:68,47:68:2421:47:1680:-116.851,0,-183.526	1/1:35:0,34:0:0:34:1220:-109.747,-10.235,0	0/1:114:56,58:56:2008:58:2082:-153.333,0,-146.676	0/1:77:45,32:45:1600:32:1137:-79.4577,0,-121.111	0/1:87:48,39:48:1724:39:1392:-99.3894,0,-129.256	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:9:0,9:0:0:9:309:-28.1406,-2.70927,0	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:186:1,185:1:36:185:6618:-592.089,-52.3933,0	1/1:143:0,143:0:0:143:5132:-462.02,-43.0473,0	1/1:54:0,54:0:0:54:1914:-172.533,-16.2556,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	0/1:68:25,43:25:896:43:1544:-118.783,0,-60.4903	0/1:66:34,32:34:1189:32:1137:-82.769,0,-87.445	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:115:58,56:58:2069:56:2000:-145.597,0,-151.802	1/1:84:0,84:0:0:84:3009:-271.041,-25.2865,0	1/1:68:0,67:0:0:67:2408:-216.616,-20.169,0	1/1:69:0,69:0:0:69:2461:-221.743,-20.7711,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:29:18,11:18:648:11:392:-26.8902,0,-49.922	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:28:16,12:16:572:12:432:-30.7924,0,-43.3846	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:57:30,27:30:1076:27:957:-69.2852,0,-79.9941	1/1:136:4,131:4:144:131:4704:-410.2,-27.6853,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:65:38,26:38:1360:26:917:-63.22,0,-103.075	0/1:112:49,63:49:1756:63:2252:-169.228,0,-124.609	0/1:68:36,32:36:1292:32:1148:-83.1552,0,-96.1137	0/1:37:25,12:25:900:12:432:-28.0831,0,-70.1829	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:76:32,44:32:1140:44:1572:-118.893,0,-80.0309	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:60:26,34:26:936:34:1201:-90.3319,0,-66.4977	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:43:23,20:23:813:20:716:-51.8234,0,-60.5448	0/1:48:25,23:25:896:23:814:-59.1316,0,-66.5109	1/1:106:0,106:0:0:106:3784:-340.76,-31.9092,0	0/1:81:48,33:48:1720:33:1180:-82.1237,0,-130.702	1/1:61:0,61:0:0:61:2187:-197.095,-18.3628,0	1/1:75:0,75:0:0:75:2687:-242.074,-22.5773,0	0/1:176:88,88:88:3125:88:3153:-231.012,0,-228.495	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	0/1:61:32,29:32:1148:29:1044:-75.912,0,-85.267	0/1:73:43,30:43:1544:30:1080:-75.5381,0,-117.278	1/1:55:0,54:0:0:54:1940:-174.516,-16.2556,0	0/1:127:53,74:53:1877:74:2660:-201.415,0,-130.976	0/1:62:32,30:32:1148:30:1072:-78.1286,0,-84.966	1/1:26:0,26:0:0:26:927:-83.7474,-7.82678,0	1/1:65:0,65:0:0:65:2320:-209.059,-19.567,0
chr05	1304950	.	C	A	12763.4	PASS	AB=0.387355;ABP=250.55;AC=42;AF=0.223404;AN=188;AO=877;CIGAR=1X;DP=5224;DPB=5224;DPRA=0.93731;EPP=1907.39;EPPR=9438.06;GTI=2;LEN=1;MEANALT=1;MQM=59.9407;MQMR=59.9636;NS=94;NUMALT=1;ODDS=2.12966;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31416;QR=155277;RO=4345;RPL=877;RPP=1907.39;RPPR=9438.06;RPR=0;RUN=1;SAF=0;SAP=1907.39;SAR=877;SRF=0;SRP=9438.06;SRR=4345;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:15,5:15:521:5:175:-10.0725,0,-41.1957	0/1:35:17,18:17:612:18:640:-47.3933,0,-44.8774	0/0:135:134,0:134:4820:0:0:0,-40.338,-433.59	0/0:190:190,0:190:6793:0:0:0,-57.1957,-611.434	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:61:45,16:45:1616:16:572:-33.4497,0,-127.367	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/1:61:43,18:43:1529:18:648:-40.2891,0,-119.538	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:46:29,17:29:1044:17:603:-40.7528,0,-80.4274	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:45:28,17:28:995:17:608:-41.5057,0,-76.3177	0/0:41:41,0:41:1449:0:0:0,-12.3422,-130.704	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:71:54,17:54:1914:17:612:-34.0357,0,-151.16	0/1:79:48,31:48:1712:31:1116:-76.9611,0,-130.584	0/1:54:21,33:21:752:33:1188:-90.973,0,-51.7506	0/1:50:37,13:37:1324:13:468:-27.4066,0,-104.411	0/0:54:51,3:51:1817:3:108:0,-6.18045,-153.734	0/0:25:23,2:23:824:2:72:0,-0.689027,-67.6466	0/0:167:167,0:167:5973:0:0:0,-50.272,-537.675	0/1:113:67,46:67:2389:46:1655:-115.222,0,-181.249	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:229:115,114:115:4093:114:4077:-298.179,0,-299.62	0/1:50:32,18:32:1129:18:648:-43.6004,0,-86.8648	0/1:35:30,5:30:1080:5:180:-6.01602,0,-86.9749	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:10:6,4:6:208:4:144:-10.3033,0,-16.0488	0/0:140:140,0:140:5014:0:0:0,-42.1442,-451.405	0/0:83:83,0:83:2942:0:0:0,-24.9855,-265.012	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:65:64,1:64:2289:1:36:0,-15.9687,-202.671	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:47:34,13:34:1207:13:449:-26.5891,0,-94.7863	0/1:44:27,17:27:964:17:612:-42.1681,0,-73.8315	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/1:116:77,39:77:2749:39:1396:-91.0115,0,-212.731	0/0:82:82,0:82:2917:0:0:0,-24.6845,-262.764	0/0:72:71,0:71:2533:0:0:0,-21.3731,-227.86	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:100:61,39:61:2176:39:1404:-96.5563,0,-166.004	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:37:26,11:26:932:11:392:-24.4819,0,-73.0608	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3112	0/1:139:83,56:83:2969:56:1997:-138.126,0,-225.598	0/1:90:52,38:52:1853:38:1368:-96.3281,0,-139.955	0/1:30:19,11:19:661:11:396:-26.9518,0,-50.7807	0/1:46:33,13:33:1165:13:468:-28.6123,0,-91.2783	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:82:81,1:81:2893:1:36:0,-21.0862,-257.006	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.6496	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.892	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.24	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:146:146,0:146:5206:0:0:0,-43.9504,-468.591	0/1:39:16,23:16:561:23:828:-63.1039,0,-39.077	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:69:50,19:50:1784:19:680:-40.7581,0,-140.072	0/1:88:56,32:56:1958:32:1146:-76.9591,0,-149.729	0/0:107:107,0:107:3821:0:0:0,-32.2102,-344.086	0/1:38:30,8:30:1080:8:288:-14.8283,0,-86.0741	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:81:52,29:52:1864:29:1044:-69.8914,0,-143.656	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:55:35,20:35:1260:20:703:-47.0369,0,-97.1264	0/1:50:29,21:29:1040:21:747:-52.5028,0,-78.8629	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:47:25,22:25:900:22:792:-57.4573,0,-67.1726	0/1:51:18,33:18:644:33:1176:-90.7952,0,-42.9381	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.673	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.778
chr05	1324420	.	A	G	168760	PASS	AB=0.524361;ABP=28.8252;AC=144;AF=0.765957;AN=188;AO=7832;CIGAR=1X;DP=10244;DPB=10244;DPRA=0;EPP=16330.7;EPPR=5136.81;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.6729;MQMR=59.99;NS=94;NUMALT=1;ODDS=4.64035;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=280064;QR=86342;RO=2408;RPL=79;RPP=16330.7;RPPR=5145.42;RPR=7753;RUN=1;SAF=7832;SAP=17010;SAR=0;SRF=2407;SRP=5223.23;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:29,45:29:1040:45:1596:-121.65,0,-71.6381	0/1:68:35,33:35:1260:33:1165:-84.6829,0,-93.2354	1/1:122:0,122:0:0:122:4372:-393.63,-36.7257,0	1/1:233:0,233:0:0:233:8352:-751.615,-70.14,0	0/1:51:21,30:21:756:30:1076:-81.7898,0,-53.0147	0/1:53:23,30:23:828:30:1076:-81.1967,0,-58.8895	0/1:133:70,63:70:2505:63:2264:-163.985,0,-185.664	1/1:150:0,149:0:0:149:5311:-477.608,-44.8535,0	0/1:175:69,106:69:2476:106:3785:-288.145,0,-170.413	1/1:97:0,97:0:0:97:3480:-313.401,-29.1999,0	1/1:49:0,49:0:0:49:1764:-159.023,-14.7505,0	1/1:160:0,160:0:0:160:5706:-513.567,-48.1648,0	0/1:104:46,58:46:1656:58:2072:-155.413,0,-118.021	1/1:119:0,119:0:0:119:4276:-384.96,-35.8226,0	0/1:124:66,58:66:2372:58:2064:-148.701,0,-176.41	1/1:68:0,68:0:0:68:2428:-218.543,-20.47,0	1/1:61:0,61:0:0:61:2173:-195.823,-18.3628,0	1/1:42:0,42:0:0:42:1504:-135.545,-12.6433,0	1/1:32:0,32:0:0:32:1148:-103.612,-9.63296,0	0/1:140:52,88:52:1868:88:3159:-242.386,0,-126.255	0/1:179:86,93:86:3084:93:3305:-243.753,0,-223.903	0/1:154:99,55:99:3506:55:1968:-131.018,0,-269.374	0/1:192:88,104:88:3164:104:3717:-276.704,0,-227.186	1/1:78:1,77:1:36:77:2743:-243.469,-19.8821,0	0/1:102:61,41:61:2192:41:1463:-101.252,0,-166.84	1/1:199:5,194:5:180:194:6948:-608.675,-43.3529,0	0/1:236:115,121:115:4140:121:4299:-316.016,0,-301.738	1/1:54:0,54:0:0:54:1936:-174.224,-16.2556,0	0/1:284:115,169:115:4110:169:6028:-457.126,0,-284.589	0/1:183:83,100:83:2961:100:3592:-268.334,0,-211.634	0/1:191:81,110:81:2893:110:3945:-297.69,0,-203.107	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3127,-1.20412,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	1/1:302:0,302:0:0:302:10800:-971.54,-90.9111,0	1/1:196:3,193:3:108:193:6869:-608.125,-48.9267,0	1/1:65:0,65:0:0:65:2340:-210.688,-19.567,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:168:4,164:4:144:164:5879:-515.863,-37.2594,0	0/1:36:12,23:12:432:23:828:-63.9482,0,-28.3253	1/1:161:0,160:0:0:160:5735:-516.02,-48.1648,0	1/1:85:1,84:1:36:84:2992:-265.697,-21.9893,0	0/1:78:38,40:38:1360:40:1440:-106.413,0,-99.2203	0/1:131:64,67:64:2292:67:2378:-174.458,0,-167.106	1/1:105:1,104:1:36:104:3713:-330.641,-28.0099,0	0/1:217:104,113:104:3736:113:4026:-296.982,0,-271.116	1/1:114:0,114:0:0:114:4059:-364.852,-34.3174,0	1/1:95:0,95:0:0:95:3393:-305.558,-28.5979,0	1/1:135:0,135:0:0:135:4829:-434.756,-40.6391,0	0/1:5:2,3:2:72:3:108:-8.56842,0,-5.33157	1/1:121:0,121:0:0:121:4352:-391.795,-36.4246,0	0/1:67:34,33:34:1220:33:1188:-87.0234,0,-89.9378	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:124:54,70:54:1921:70:2512:-188.969,0,-135.837	1/1:95:0,95:0:0:95:3408:-306.889,-28.5979,0	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:82:40,42:40:1440:42:1504:-110.963,0,-105.213	1/1:155:2,153:2:72:153:5500:-488.194,-39.8229,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:257:90,167:90:3232:167:5951:-458.163,0,-213.736	0/1:175:77,98:77:2760:98:3493:-261.848,0,-195.961	0/1:62:38,24:38:1368:24:860:-59.0473,0,-104.757	0/1:91:26,65:26:932:65:2336:-183.095,0,-56.8051	1/1:211:4,207:4:144:207:7398:-652.204,-50.2037,0	1/1:128:1,127:1:36:127:4560:-406.902,-34.9336,0	1/1:46:1,45:1:36:45:1616:-142.126,-10.2491,0	1/1:44:0,44:0:0:44:1542:-139.049,-13.2453,0	0/1:52:29,23:29:1040:23:798:-56.4805,0,-78.2608	1/1:18:0,18:0:0:18:648:-58.6446,-5.41854,0	1/1:160:0,160:0:0:160:5699:-512.989,-48.1648,0	1/1:84:0,84:0:0:84:2992:-269.474,-25.2865,0	1/1:198:1,197:1:36:197:7037:-629.762,-56.0057,0	1/1:123:0,122:0:0:122:4376:-393.631,-36.7257,0	0/1:171:80,91:80:2872:91:3256:-241.685,0,-207.24	1/1:108:3,105:3:104:105:3768:-329.585,-22.8084,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:64:46,18:46:1656:18:633:-38.0276,0,-130.062	0/1:130:64,66:64:2270:66:2356:-173.16,0,-165.425	1/1:164:0,164:0:0:164:5860:-527.303,-49.3689,0	0/1:63:33,30:33:1188:30:1057:-76.4741,0,-88.2637	1/1:97:0,97:0:0:97:3488:-314.107,-29.1999,0	1/1:72:0,72:0:0:72:2571:-231.625,-21.6742,0	0/1:244:111,133:111:3996:133:4760:-355.103,0,-286.376	1/1:48:0,48:0:0:48:1715:-154.622,-14.4494,0	0/1:99:49,50:49:1756:50:1800:-132.462,0,-128.522	0/1:115:72,43:72:2592:43:1540:-104.264,0,-198.91	1/1:49:0,49:0:0:49:1764:-159.037,-14.7505,0	0/1:119:61,58:61:2188:58:2084:-151.932,0,-161.363	0/1:143:92,51:92:3304:51:1813:-120.396,0,-254.531	1/1:229:0,229:0:0:229:8189:-736.893,-68.9359,0	1/1:161:0,161:0:0:161:5788:-521.014,-48.4658,0
chr05	1324447	.	A	T	155275	PASS	AB=0.633359;ABP=610.559;AC=146;AF=0.776596;AN=188;AO=7438;CIGAR=1X;DP=8908;DPB=8908;DPRA=0;EPP=16154.4;EPPR=3145.23;GTI=2;LEN=1;MEANALT=1.07447;MQM=59.7248;MQMR=59.9809;NS=94;NUMALT=1;ODDS=1.76991;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261967;QR=48524;RO=1463;RPL=7438;RPP=16154.4;RPPR=3153.87;RPR=0;RUN=1;SAF=7438;SAP=16154.4;SAR=0;SRF=1462;SRP=3171.19;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:18,40:18:605:40:1415:-110.187,0,-37.3063	0/1:52:20,32:20:631:32:1121:-85.533,0,-41.4328	1/1:122:0,122:0:0:122:4288:-386.078,-36.7257,0	1/1:215:1,214:1:36:214:7595:-679.969,-61.1232,0	0/1:47:19,28:19:632:28:995:-75.7051,0,-43.044	0/1:43:15,28:15:501:28:1004:-77.7316,0,-32.4634	0/1:102:41,61:41:1389:61:2152:-163.242,0,-94.5983	1/1:142:0,142:0:0:142:4995:-449.63,-42.7463,0	0/1:147:49,98:49:1615:98:3491:-270.136,0,-101.37	1/1:91:0,91:0:0:91:3211:-289.215,-27.3937,0	1/1:47:0,47:0:0:47:1654:-149.134,-14.1484,0	1/1:150:1,149:1:32:149:5242:-468.65,-41.9552,0	0/1:77:20,57:20:653:57:2002:-157.249,0,-35.8995	1/1:115:0,115:0:0:115:4060:-365.537,-34.6185,0	0/1:96:38,58:38:1272:58:2060:-156.773,0,-85.8764	1/1:67:0,67:0:0:67:2347:-211.486,-20.169,0	1/1:58:0,58:0:0:58:2034:-183.322,-17.4597,0	1/1:40:0,40:0:0:40:1381:-124.581,-12.0412,0	1/1:29:2,27:2:64:27:948:-79.5526,-2.65118,0	0/1:115:28,87:28:961:87:3065:-240.83,0,-52.1801	0/1:140:51,88:51:1661:88:3119:-238.872,0,-107.709	0/1:106:55,50:55:1828:50:1746:-125.444,0,-132.809	0/1:153:54,99:54:1828:99:3487:-267.961,0,-118.736	1/1:71:0,71:0:0:71:2489:-224.256,-21.3731,0	0/1:75:34,41:34:1153:41:1464:-109.24,0,-81.4908	1/1:188:5,183:5:161:183:6429:-563.871,-41.7871,0	0/1:184:71,113:71:2360:113:3961:-301.282,0,-157.262	1/1:50:0,50:0:0:50:1744:-157.233,-15.0515,0	0/1:227:63,164:63:2085:164:5797:-453.506,0,-119.579	0/1:144:50,94:50:1652:94:3323:-255.896,0,-105.608	0/1:156:55,101:55:1902:101:3549:-272.649,0,-124.465	0/1:6:4,2:4:125:2:72:-5.03054,0,-9.75244	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0742,-0.90309,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	1/1:288:0,288:0:0:288:10102:-909.071,-86.6966,0	1/1:187:2,185:2:72:185:6542:-582.004,-49.4559,0	1/1:61:0,60:0:0:60:2093:-188.268,-18.0618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:159:2,157:2:64:157:5522:-490.998,-41.7851,0	0/1:32:11,21:11:352:21:744:-57.6514,0,-22.3574	1/1:153:1,152:1:32:152:5340:-477.502,-42.8583,0	1/1:81:0,81:0:0:81:2805:-252.626,-24.3834,0	0/1:60:22,38:22:695:38:1318:-100.856,0,-44.7865	0/1:103:40,63:40:1287:63:2210:-168.097,0,-85.1077	1/1:97:0,97:0:0:97:3406:-306.678,-29.1999,0	0/1:167:58,109:58:1905:109:3821:-293.606,0,-121.446	1/1:112:0,111:0:0:111:3931:-353.544,-33.4143,0	1/1:95:0,95:0:0:95:3345:-301.25,-28.5979,0	1/1:124:0,124:0:0:124:4383:-394.643,-37.3277,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:113:0,113:0:0:113:4009:-360.947,-34.0164,0	0/1:52:22,30:22:745:30:1047:-78.8254,0,-51.7098	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:95:29,66:29:1000:66:2344:-182.584,0,-61.7121	1/1:85:0,85:0:0:85:3006:-270.763,-25.5876,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	0/1:66:23,43:23:781:43:1520:-117.22,0,-50.7347	1/1:147:1,145:1:36:145:5091:-454.724,-40.7119,0	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	0/1:207:47,160:47:1524:160:5574:-439.374,0,-75.1265	0/1:142:47,95:47:1552:95:3367:-260.454,0,-97.2156	0/1:50:27,23:27:865:23:820:-59.071,0,-63.0943	0/1:75:16,59:16:537:59:2072:-164.166,0,-26.0705	1/1:203:3,199:3:78:199:6997:-622.441,-53.8422,0	1/1:119:1,118:1:36:118:4144:-369.527,-32.2243,0	1/1:46:1,45:1:36:45:1576:-138.53,-10.2491,0	1/1:38:0,38:0:0:38:1355:-122.238,-11.4391,0	0/1:35:16,19:16:532:19:676:-50.6319,0,-37.6618	1/1:16:0,16:0:0:16:576:-52.1716,-4.81648,0	1/1:152:0,152:0:0:152:5383:-484.59,-45.7566,0	1/1:78:0,78:0:0:78:2724:-245.395,-23.4803,0	1/1:190:1,189:1:36:189:6697:-599.108,-53.5974,0	1/1:116:0,116:0:0:116:4108:-369.889,-34.9195,0	0/1:135:50,85:50:1666:85:3021:-231.479,0,-109.581	1/1:103:3,100:3:104:100:3544:-309.44,-21.3033,0	0/1:5:4,1:4:136:1:36:-2.09312,0,-11.0704	0/1:46:29,17:29:982:17:612:-41.5661,0,-74.8366	0/1:105:41,64:41:1363:64:2252:-171.331,0,-91.3509	1/1:158:0,158:0:0:158:5564:-500.723,-47.5627,0	0/1:50:21,29:21:655:29:1011:-76.2489,0,-44.1926	1/1:96:0,96:0:0:96:3366:-303.152,-28.8989,0	1/1:65:0,65:0:0:65:2281:-205.539,-19.567,0	0/1:202:71,130:71:2398:130:4554:-349.253,0,-155.299	1/1:49:0,49:0:0:49:1718:-154.891,-14.7505,0	0/1:75:27,48:27:879:48:1688:-129.619,0,-56.8343	0/1:96:52,44:52:1730:44:1551:-110.971,0,-127.079	1/1:48:0,48:0:0:48:1684:-151.838,-14.4494,0	0/1:96:41,55:41:1360:55:1942:-146.149,0,-93.7932	0/1:99:52,47:52:1656:47:1636:-117.721,0,-119.51	1/1:214:0,214:0:0:214:7585:-682.655,-64.4204,0	1/1:155:0,155:0:0:155:5412:-487.213,-46.6597,0
chr05	1340802	.	ACCCT	GCCCT	116733	PASS	AB=0.485393;ABP=9.10047;AC=141;AF=0.75;AN=188;AO=5497;CIGAR=1X4M;DP=7233;DPB=7232.8;DPRA=19.6332;EPP=11896.2;EPPR=3631.54;GTI=1;LEN=1;MEANALT=1.6087;MQM=59.9945;MQMR=60;NS=94;NUMALT=1;ODDS=2.88955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196341;QR=57268;RO=1671;RPL=5;RPP=11896.2;RPPR=3631.54;RPR=5492;RUN=1;SAF=5497;SAP=11939.6;SAR=0;SRF=1671;SRP=3631.54;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:7,24:7:245:24:836:-65.8716,0,-12.7057	0/1:90:30,60:30:1049:60:2144:-166.135,0,-67.628	1/1:116:0,115:0:0:115:4095:-368.515,-34.6185,0	1/1:127:0,126:0:0:126:4520:-406.666,-37.9298,0	0/1:39:18,21:18:607:21:756:-56.6271,0,-43.2067	0/1:60:28,31:28:967:31:1116:-82.6311,0,-69.2204	0/1:68:39,29:39:1336:29:1032:-72.7229,0,-100.067	1/1:127:2,123:2:71:123:4403:-389.724,-31.2166,0	0/1:69:36,31:36:1223:31:1108:-79.5023,0,-89.8405	1/1:64:0,63:0:0:63:2252:-202.583,-18.9649,0	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	1/1:58:0,57:0:0:57:2039:-183.51,-17.1587,0	0/1:56:36,20:36:1256:20:720:-48.2711,0,-96.485	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:55:26,29:26:886:29:1021:-75.6436,0,-63.4935	1/1:45:0,44:0:0:44:1564:-140.838,-13.2453,0	1/1:62:0,62:0:0:62:2195:-197.816,-18.6639,0	1/1:59:0,58:0:0:58:2075:-186.66,-17.4597,0	1/1:51:0,51:0:0:51:1827:-164.71,-15.3525,0	0/1:118:43,75:43:1471:75:2677:-205.653,0,-97.1601	0/1:98:46,51:46:1589:51:1824:-134.94,0,-113.798	0/1:65:50,15:50:1739:15:525:-28.0111,0,-137.226	0/1:60:26,33:26:881:33:1175:-87.9365,0,-61.4803	1/1:75:4,70:4:140:70:2493:-211.679,-9.67336,0	0/1:46:22,24:22:754:24:860:-63.8745,0,-54.3294	1/1:274:0,269:0:0:269:9644:-867.554,-80.9771,0	0/1:149:63,83:63:2192:83:2942:-220.74,0,-153.273	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:163:89,73:89:3095:73:2616:-186.699,0,-229.797	0/1:116:52,61:52:1789:61:2176:-161.765,0,-126.949	0/1:88:45,41:45:1534:41:1472:-106.542,0,-112.115	0/1:7:4,3:4:143:3:108:-7.96796,0,-11.1142	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:12:7,5:7:235:5:176:-12.4645,0,-17.866	1/1:192:0,190:0:0:190:6820:-613.548,-57.1957,0	1/1:200:0,196:0:0:196:6987:-628.574,-59.0019,0	1/1:76:0,75:0:0:75:2678:-241.034,-22.5773,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:123:0,122:0:0:122:4351:-391.555,-36.7257,0	0/1:35:19,16:19:668:16:572:-41.2774,0,-49.9097	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:70:41,29:41:1413:29:1020:-71.0387,0,-106.393	0/1:104:58,45:58:1983:45:1597:-112.741,0,-147.465	1/1:97:0,97:0:0:97:3460:-311.613,-29.1999,0	0/1:156:93,63:93:3141:63:2235:-154.435,0,-235.967	1/1:92:0,92:0:0:92:3296:-296.859,-27.6948,0	1/1:116:0,116:0:0:116:4125:-371.434,-34.9195,0	1/1:90:0,90:0:0:90:3216:-289.663,-27.0927,0	0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8522	1/1:134:0,134:0:0:134:4807:-432.784,-40.338,0	0/1:31:13,18:13:433:18:644:-48.9587,0,-29.9568	0/1:15:12,3:12:403:3:108:-5.55972,0,-32.0765	0/1:104:53,50:53:1738:50:1790:-130.016,0,-125.332	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:11:6,4:6:200:4:144:-10.0474,0,-15.0716	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:55:23,32:23:773:32:1148:-87.0732,0,-53.3251	1/1:100:0,99:0:0:99:3536:-318.159,-29.802,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:125:65,57:65:2234:57:2044:-147.146,0,-164.241	0/1:225:92,131:92:3170:131:4680:-353.892,0,-218.063	0/1:51:23,28:23:803:28:1008:-75.6838,0,-57.2369	0/1:52:27,25:27:911:25:900:-65.6675,0,-66.6441	1/1:156:1,154:1:36:154:5524:-493.686,-43.4212,0	1/1:112:0,111:0:0:111:3975:-357.58,-33.4143,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:55:0,55:0:0:55:1948:-175.593,-16.5567,0	0/1:91:48,41:48:1645:41:1452:-103.861,0,-121.224	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:32:1,29:1:36:29:1036:-90.0159,-5.75917,0	1/1:159:0,159:0:0:159:5666:-510.06,-47.8638,0	1/1:123:0,123:0:0:123:4390:-395.274,-37.0267,0	0/1:94:54,40:54:1841:40:1436:-101.241,0,-137.673	1/1:87:0,87:0:0:87:3079:-277.338,-26.1896,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:117:71,43:71:2425:43:1531:-103.477,0,-183.905	0/1:78:38,40:38:1270:40:1428:-105.337,0,-91.1131	1/1:165:0,165:0:0:165:5881:-529.401,-49.67,0	0/1:100:49,51:49:1681:51:1824:-134.338,0,-121.471	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:58:0,57:0:0:57:2031:-182.722,-17.1587,0	0/1:103:47,55:47:1613:55:1976:-147.05,0,-114.391	1/1:46:0,46:0:0:46:1647:-148.518,-13.8474,0	0/1:67:30,35:30:1011:35:1234:-91.4977,0,-71.4292	0/1:45:23,21:23:795:21:743:-53.7029,0,-58.3773	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	0/1:110:64,45:64:2225:45:1616:-112.665,0,-167.452	0/1:49:38,11:38:1299:11:388:-20.5069,0,-102.457	1/1:70:0,70:0:0:70:2492:-224.531,-21.0721,0	1/1:90:0,89:0:0:89:3204:-288.222,-26.7917,0
chr05	1340808	.	C	A	28144.6	PASS	AB=0.505814;ABP=3.96979;AC=47;AF=0.25;AN=188;AO=1672;CIGAR=1X;DP=7244;DPB=7244;DPRA=0.969771;EPP=3625.03;EPPR=12041.7;GTI=1;LEN=1;MEANALT=1.03922;MQM=60;MQMR=59.9862;NS=94;NUMALT=1;ODDS=3.39462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59934;QR=198618;RO=5564;RPL=1;RPP=3625.03;RPPR=12041.7;RPR=1671;RUN=1;SAF=1672;SAP=3633.71;SAR=0;SRF=5564;SRP=12085.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:28,7:28:995:7:252:-12.4929,0,-79.328	0/1:89:59,29:59:2120:29:1040:-67.0639,0,-164.218	0/0:115:115,0:115:4127:0:0:0,-34.6184,-371.612	0/0:127:127,0:127:4515:0:0:0,-38.2308,-406.521	0/1:37:20,17:20:712:17:608:-43.9139,0,-53.2685	0/1:62:34,28:34:1216:28:1008:-72.3725,0,-91.0827	0/1:67:28,39:28:1000:39:1400:-106.13,0,-70.1464	0/0:134:132,2:132:4715:2:72:0,-33.5013,-417.673	0/1:71:33,38:33:1184:38:1364:-101.688,0,-85.4952	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:41:40,0:40:1432:0:0:0,-12.0412,-128.818	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.033	0/1:56:20,36:20:716:36:1296:-100.086,0,-47.91	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:54:28,26:28:1000:26:936:-68.3038,0,-74.0598	0/0:45:45,0:45:1595:0:0:0,-13.5463,-143.84	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:118:76,42:76:2657:42:1508:-100.493,0,-203.851	0/1:97:51,46:51:1811:46:1656:-120.128,0,-134.071	0/1:65:15,50:15:540:50:1781:-141.004,0,-29.3696	0/1:58:32,26:32:1144:26:932:-66.7391,0,-85.8098	0/0:76:72,4:72:2570:4:144:0,-9.56466,-218.235	0/1:47:25,22:25:888:22:792:-57.4573,0,-66.0906	0/0:274:274,0:274:9788:0:0:0,-82.4822,-880.867	0/1:149:85,64:85:3052:64:2289:-161.417,0,-230.055	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/1:162:72,90:72:2552:90:3226:-241.793,0,-181.165	0/1:115:62,53:62:2232:53:1904:-137.019,0,-166.525	0/1:87:42,45:42:1500:45:1608:-118.82,0,-109.105	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:192:192,0:192:6872:0:0:0,-57.7978,-618.549	0/0:199:198,0:198:7034:0:0:0,-59.6039,-631.991	0/0:78:77,1:77:2734:1:23:0,-21.1804,-244.003	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:122:122,0:122:4347:0:0:0,-36.7257,-391.406	0/1:36:17,19:17:608:19:684:-51.0532,0,-44.2149	0/0:97:97,0:97:3452:0:0:0,-29.1999,-310.892	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:68:29,39:29:1035:39:1400:-105.829,0,-72.993	0/1:103:46,57:46:1644:57:2046:-153.405,0,-117.243	0/0:95:95,0:95:3386:0:0:0,-28.5978,-304.955	0/1:151:61,90:61:2161:90:3220:-244.566,0,-149.282	0/0:92:92,0:92:3279:0:0:0,-27.6948,-295.33	0/0:118:118,0:118:4227:0:0:0,-35.5215,-380.609	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:138:138,0:138:4932:0:0:0,-41.5421,-444.029	0/1:33:20,13:20:712:13:453:-31.1656,0,-54.4727	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/1:102:49,53:49:1756:53:1896:-140.213,0,-127.619	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:54:31,23:31:1096:23:828:-58.5885,0,-82.6943	0/0:100:98,0:98:3495:0:0:0,-29.5009,-314.402	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:127:61,66:61:2159:66:2372:-175.507,0,-156.346	0/1:223:130,93:130:4634:93:3336:-233.327,0,-350.094	0/1:51:28,23:28:992:23:828:-59.4916,0,-74.2419	0/1:52:25,27:25:896:27:968:-71.7838,0,-65.3068	0/0:156:154,2:154:5461:2:72:0,-40.124,-484.786	0/0:114:114,0:114:4075:0:0:0,-34.3174,-366.936	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/1:91:43,48:43:1544:48:1720:-127.692,0,-111.859	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:32:31,1:31:1099:1:36:0,-6.03468,-95.6212	0/0:163:163,0:163:5836:0:0:0,-49.0679,-525.352	0/0:123:122,1:122:4355:1:21:0,-34.9267,-390.025	0/1:92:39,52:39:1392:52:1864:-140.325,0,-97.8644	0/0:87:87,0:87:3115:0:0:0,-26.1896,-280.576	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:117:44,73:44:1568:73:2609:-199.836,0,-106.191	0/1:77:41,36:41:1468:36:1288:-93.0443,0,-109.237	0/0:164:164,0:164:5845:0:0:0,-49.3689,-526.163	0/1:100:51,49:51:1832:49:1760:-128.581,0,-135.058	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:61:61,0:61:2149:0:0:0,-18.3628,-193.676	0/1:106:58,48:58:2080:48:1720:-123.176,0,-155.561	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/1:67:36,31:36:1288:31:1110:-80.0423,0,-96.0546	0/1:43:20,23:20:716:23:828:-61.8998,0,-51.8234	0/0:37:36,0:36:1288:0:0:0,-10.8371,-115.864	0/1:110:45,65:45:1608:65:2340:-177.746,0,-111.897	0/1:50:12,38:12:424:38:1368:-108.369,0,-23.4449	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:89:88,0:88:3151:0:0:0,-26.4906,-283.455
chr05	1431744	.	C	T	198430	PASS	AB=0.512392;ABP=9.95275;AC=146;AF=0.776596;AN=188;AO=8092;CIGAR=1X;DP=10655;DPB=10655;DPRA=57.2742;EPP=17091.5;EPPR=5359.66;GTI=3;LEN=1;MEANALT=1.04301;MQM=49.0171;MQMR=59.31;NS=94;NUMALT=1;ODDS=0.0845956;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=289176;QR=91191;RO=2558;RPL=1185;RPP=8789.07;RPPR=2433.28;RPR=6907;RUN=1;SAF=1129;SAP=9136.39;SAR=6963;SRF=410;SRP=2567.22;SRR=2148;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:106:41,65:41:1472:65:2328:-176.339,0,-100.782	0/1:83:43,40:43:1544:40:1404:-100.755,0,-114.232	1/1:203:0,203:0:0:203:7243:-645.469,-61.1091,0	1/1:287:0,287:0:0:287:10246:-913.416,-86.3956,0	0/1:82:40,42:40:1440:42:1508:-109.688,0,-105.139	0/1:62:33,29:33:1180:29:1029:-73.165,0,-87.8266	0/1:155:73,82:73:2616:82:2913:-212.818,0,-188.816	1/1:131:2,129:2:72:129:4584:-400.292,-32.5982,0	0/1:137:58,79:58:2080:79:2828:-211.572,0,-146.211	1/1:73:0,73:0:0:73:2608:-232.39,-21.9752,0	1/1:41:0,41:0:0:41:1468:-130.823,-12.3422,0	1/1:117:0,117:0:0:117:4190:-371.459,-35.2205,0	0/1:74:39,35:39:1379:35:1256:-89.9136,0,-102.125	1/1:43:0,43:0:0:43:1520:-135.705,-12.9443,0	0/1:60:26,34:26:902:34:1216:-90.8495,0,-63.4063	1/1:66:0,66:0:0:66:2352:-207.843,-19.868,0	1/1:27:0,27:0:0:27:964:-86.5208,-8.12781,0	1/1:28:0,28:0:0:28:1004:-89.9631,-8.42884,0	1/1:23:0,23:0:0:23:809:-72.0349,-6.92369,0	0/1:469:234,235:234:8353:235:8417:-609.524,0,-610.475	0/1:183:94,89:94:3364:89:3188:-228.425,0,-247.744	0/1:192:121,69:121:4301:69:2472:-164.342,0,-329.269	0/1:132:58,74:58:2060:74:2644:-196.633,0,-145.907	1/1:102:7,95:7:248:95:3393:-279.895,-8.04087,0	1/1:133:0,133:0:0:133:4756:-423.047,-40.037,0	1/1:538:0,537:0:0:537:19235:-1722.55,-161.653,0	0/1:258:109,149:109:3899:149:5344:-397.978,0,-272.922	1/1:37:0,37:0:0:37:1328:-118.264,-11.1381,0	0/1:542:273,269:273:9732:269:9616:-699.432,0,-711.889	0/1:110:57,53:57:2048:53:1900:-136.462,0,-151.421	0/1:111:50,61:50:1792:61:2184:-161.562,0,-128.148	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	1/1:7:0,7:0:0:7:252:-22.7936,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.2304,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.7883,-0.60206,0	0/1:8:2,6:2:72:6:208:-16.512,0,-4.42848	1/1:415:1,414:1:36:414:14792:-1321.64,-121.329,0	1/1:92:1,91:1:36:91:3264:-287.078,-24.1361,0	1/1:43:0,43:0:0:43:1548:-138.55,-12.9443,0	1/1:1:0,1:0:0:1:36:-3.55862,-0.30103,0	1/1:173:2,171:2:72:171:6108:-537.021,-45.2415,0	0/1:28:12,16:12:432:16:572:-42.6013,0,-30.7924	1/1:165:0,165:0:0:165:5895:-524.727,-49.67,0	1/1:65:0,65:0:0:65:2320:-207.27,-19.567,0	0/1:63:29,34:29:1044:34:1216:-89.5662,0,-75.2745	0/1:230:97,133:97:3450:133:4733:-354.812,0,-241.418	1/1:131:0,131:0:0:131:4688:-417.757,-39.4349,0	0/1:94:52,42:52:1864:42:1493:-105.021,0,-139.555	1/1:97:0,97:0:0:97:3468:-309.989,-29.1999,0	1/1:105:0,105:0:0:105:3737:-332.896,-31.6082,0	1/1:267:0,267:0:0:267:9560:-856.454,-80.375,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:155:1,154:1:36:154:5497:-486.673,-43.0614,0	0/1:146:59,87:59:2099:87:3111:-233.613,0,-145.156	0/1:11:9,2:9:320:2:72:-3.47697,0,-25.8297	0/1:141:81,60:81:2886:60:2125:-145.996,0,-217.366	1/1:84:0,84:0:0:84:3008:-268.185,-25.2865,0	0/1:5:4,1:4:144:1:36:-2.09268,0,-11.7855	1/1:14:0,14:0:0:14:504:-45.6363,-4.21442,0	0/1:84:39,45:39:1400:45:1612:-118.371,0,-100.942	1/1:74:1,73:1:32:73:2620:-230.869,-19.0769,0	1/1:5:0,5:0:0:5:180:-16.4378,-1.50515,0	0/1:396:197,199:197:7048:199:7128:-519.951,0,-514.488	0/1:200:83,116:83:2949:116:4168:-312.04,0,-205.358	0/1:53:27,26:27:964:26:925:-66.8298,0,-71.1222	0/1:110:39,71:39:1396:71:2540:-192.071,0,-92.803	1/1:189:3,186:3:108:186:6652:-582.234,-46.8199,0	1/1:138:1,137:1:36:137:4908:-433.062,-37.9439,0	1/1:11:0,11:0:0:11:387:-34.8968,-3.31133,0	1/1:45:0,45:0:0:45:1616:-144.782,-13.5464,0	0/1:101:43,58:43:1532:58:2068:-155.58,0,-107.747	1/1:10:0,10:0:0:10:360:-32.3491,-3.0103,0	1/1:110:1,109:1:36:109:3884:-342.683,-29.515,0	1/1:107:0,107:0:0:107:3798:-339.714,-32.2102,0	1/1:136:0,135:0:0:135:4812:-429.488,-40.6391,0	1/1:184:0,184:0:0:184:6546:-584.696,-55.3895,0	0/1:77:42,35:42:1496:35:1256:-89.4205,0,-111.664	1/1:68:1,67:1:32:67:2396:-211.179,-17.2707,0	1/1:3:0,3:0:0:3:108:-9.99823,-0.90309,0	0/1:130:58,72:58:2049:72:2565:-189.668,0,-145.526	0/1:121:61,60:61:2149:60:2125:-152.844,0,-157.118	1/1:258:0,258:0:0:258:9240:-823.81,-77.6657,0	0/1:42:19,23:19:684:23:824:-60.7004,0,-49.2186	1/1:84:0,84:0:0:84:3005:-267.671,-25.2865,0	1/1:65:0,65:0:0:65:2332:-206.801,-19.567,0	0/1:123:63,60:63:2233:60:2148:-154.731,0,-164.174	1/1:18:0,18:0:0:18:648:-57.9388,-5.41854,0	0/1:57:26,31:26:893:31:1100:-80.7681,0,-63.5111	0/1:68:39,29:39:1388:29:1016:-70.5538,0,-104.515	1/1:14:0,14:0:0:14:496:-44.2493,-4.21442,0	0/1:49:25,24:25:873:24:864:-62.3766,0,-64.0949	0/1:112:80,32:80:2848:32:1148:-69.1177,0,-222.744	1/1:154:0,154:0:0:154:5508:-491.198,-46.3586,0	1/1:104:0,104:0:0:104:3715:-331.196,-31.3071,0
chr05	1431904	.	G	A	123352	PASS	AB=0.525728;ABP=22.5638;AC=144;AF=0.765957;AN=188;AO=5838;CIGAR=1X;DP=7464;DPB=7464;DPRA=0;EPP=12680.1;EPPR=3527.31;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9418;MQMR=59.9778;NS=94;NUMALT=1;ODDS=11.2618;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207874;QR=56437;RO=1623;RPL=0;RPP=12680.1;RPPR=3527.31;RPR=5838;RUN=1;SAF=0;SAP=12680.1;SAR=5838;SRF=0;SRP=3527.31;SRR=1623;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:11,4:11:379:4:137:-8.15194,0,-29.9251	0/1:99:29,70:29:1013:70:2501:-195.541,0,-61.6772	1/1:142:0,142:0:0:142:5056:-455.185,-42.7463,0	1/1:223:0,223:0:0:223:7955:-715.972,-67.1297,0	0/1:84:46,38:46:1596:38:1333:-94.9817,0,-118.64	0/1:22:8,14:8:284:14:494:-38.1704,0,-19.2807	0/1:76:35,41:35:1208:41:1476:-110.253,0,-86.139	1/1:113:0,113:0:0:113:4021:-362.068,-34.0164,0	0/1:41:34,7:34:1198:7:252:-10.6867,0,-95.7818	1/1:64:0,64:0:0:64:2276:-205.1,-19.2659,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:50:0,50:0:0:50:1780:-160.483,-15.0515,0	0/1:51:23,28:23:776:28:996:-74.6024,0,-54.7982	1/1:47:0,47:0:0:47:1657:-149.415,-14.1484,0	0/1:49:23,26:23:782:26:932:-69.4484,0,-55.9429	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:33:0,33:0:0:33:1171:-105.697,-9.93399,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:33:0,33:0:0:33:1162:-104.885,-9.93399,0	0/1:188:88,100:88:3073:100:3544:-262.575,0,-220.203	0/1:115:55,60:55:1931:60:2124:-156.799,0,-139.445	0/1:152:100,52:100:3473:52:1859:-121.832,0,-267.025	0/1:82:37,45:37:1274:45:1604:-119.966,0,-90.2716	1/1:62:5,57:5:180:57:2048:-168.039,-2.1118,0	1/1:38:0,38:0:0:38:1355:-122.25,-11.4391,0	1/1:248:0,248:0:0:248:8839:-795.498,-74.6554,0	0/1:218:103,115:103:3613:115:4119:-305.269,0,-259.753	1/1:18:0,18:0:0:18:628:-56.8455,-5.41854,0	0/1:228:90,136:90:3152:136:4858:-368.981,0,-215.487	0/1:122:54,68:54:1855:68:2416:-180.97,0,-130.498	0/1:81:35,46:35:1240:46:1628:-122.423,0,-87.521	0/1:25:9,16:9:316:16:576:-44.6492,0,-21.2531	1/1:23:0,23:0:0:23:812:-73.4004,-6.92369,0	0/1:12:8,4:8:273:4:129:-8.31619,0,-21.2878	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	1/1:116:0,116:0:0:116:4092:-368.469,-34.9195,0	1/1:220:0,220:0:0:220:7883:-709.488,-66.2266,0	1/1:40:0,40:0:0:40:1415:-127.647,-12.0412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:132:0,132:0:0:132:4706:-423.697,-39.736,0	0/1:22:9,13:9:290:13:460:-35.1127,0,-19.7894	1/1:125:1,124:1:36:124:4421:-394.464,-34.0305,0	1/1:40:0,40:0:0:40:1406:-126.835,-12.0412,0	0/1:22:13,9:13:439:9:324:-22.8832,0,-33.2108	0/1:79:35,44:35:1239:44:1578:-118.53,0,-88.0147	1/1:160:0,160:0:0:160:5684:-511.671,-48.1648,0	0/1:203:101,102:101:3552:102:3655:-267.877,0,-258.78	1/1:126:0,126:0:0:126:4512:-406.248,-37.9298,0	1/1:175:1,174:1:27:174:6194:-554.849,-49.9805,0	1/1:127:0,127:0:0:127:4523:-407.079,-38.2308,0	0/1:19:9,10:9:320:10:360:-27.0247,0,-23.4228	1/1:141:0,141:0:0:141:5020:-451.947,-42.4452,0	0/1:13:10,3:10:332:3:104:-5.78942,0,-26.2867	0/1:24:12,12:12:413:12:428:-31.6341,0,-30.2731	0/1:148:73,75:73:2537:75:2679:-196.802,0,-184.028	1/1:36:0,36:0:0:36:1260:-113.696,-10.8371,0	0/1:17:12,5:12:424:5:180:-11.4346,0,-33.3789	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:48:13,35:13:460:35:1237:-97.1829,0,-27.2859	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/1:173:79,94:79:2785:94:3334:-248.197,0,-198.813	0/1:134:59,75:59:2080:75:2658:-199.128,0,-147.13	0/1:71:36,35:36:1252:35:1247:-91.1553,0,-91.6061	0/1:108:43,64:43:1486:64:2262:-171.268,0,-101.455	1/1:147:0,147:0:0:147:5248:-472.456,-44.2514,0	1/1:112:0,112:0:0:112:3969:-357.243,-33.7154,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:68:0,68:0:0:68:2417:-217.785,-20.47,0	0/1:32:14,18:14:487:18:631:-47.4827,0,-34.5262	1/1:10:0,10:0:0:10:360:-32.7157,-3.0103,0	1/1:74:1,73:1:36:73:2597:-230.379,-18.6779,0	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	1/1:95:0,95:0:0:95:3383:-304.686,-28.5979,0	1/1:182:0,182:0:0:182:6481:-583.373,-54.7875,0	0/1:85:41,44:41:1395:44:1580:-116.904,0,-100.252	1/1:167:3,164:3:108:164:5846:-516.176,-40.1968,0	0/1:17:13,4:13:451:4:144:-8.19611,0,-35.8023	0/1:115:46,69:46:1606:69:2467:-187.507,0,-110.209	0/1:107:54,53:54:1924:53:1885:-137.716,0,-141.227	1/1:150:0,150:0:0:150:5371:-483.521,-45.1545,0	0/1:55:27,28:27:931:28:1000:-73.6418,0,-67.5449	1/1:36:1,35:1:27:35:1247:-109.834,-8.1373,0	1/1:19:0,19:0:0:19:684:-61.8857,-5.71957,0	0/1:53:24,29:24:801:29:1036:-77.5993,0,-56.4443	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	0/1:47:26,21:26:863:21:735:-52.323,0,-63.8238	0/1:40:22,18:22:741:18:644:-46.2494,0,-54.961	1/1:35:0,35:0:0:35:1240:-111.904,-10.5361,0	0/1:68:28,40:28:931:40:1414:-107.086,0,-63.6206	0/1:28:18,10:18:636:10:352:-23.5894,0,-49.1392	1/1:101:0,101:0:0:101:3612:-325.28,-30.404,0	1/1:57:1,56:1:36:56:1973:-174.245,-13.5604,0
chr05	1431911	.	G	A	121773	PASS	AB=0.511793;ABP=7.2613;AC=143;AF=0.760638;AN=188;AO=5813;CIGAR=1X;DP=7544;DPB=7544;DPRA=0;EPP=12625.8;EPPR=3759.66;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9472;MQMR=59.989;NS=94;NUMALT=1;ODDS=2.451;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206250;QR=61310;RO=1730;RPL=0;RPP=12625.8;RPPR=3759.66;RPR=5813;RUN=1;SAF=0;SAP=12625.8;SAR=5813;SRF=0;SRP=3759.66;SRR=1730;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:11,4:11:383:4:137:-8.15194,0,-30.2878	0/1:102:31,71:31:1103:71:2516:-195.986,0,-68.8747	1/1:145:0,145:0:0:145:5173:-465.71,-43.6494,0	1/1:216:0,216:0:0:216:7698:-692.856,-65.0225,0	0/1:87:48,39:48:1696:39:1387:-98.9392,0,-126.734	0/1:23:10,13:10:356:13:462:-34.9925,0,-25.4576	0/1:77:36,41:36:1292:41:1459:-108.425,0,-93.4045	1/1:116:0,116:0:0:116:4148:-373.495,-34.9195,0	0/1:41:34,7:34:1205:7:252:-10.6867,0,-96.4117	1/1:64:1,63:1:32:63:2251:-199.654,-16.0666,0	1/1:22:0,22:0:0:22:749:-67.7234,-6.62266,0	1/1:48:0,48:0:0:48:1703:-153.554,-14.4494,0	0/1:56:27,29:27:943:29:1027:-75.8845,0,-68.3255	1/1:45:0,45:0:0:45:1592:-143.57,-13.5464,0	0/1:50:25,25:25:871:25:892:-65.5482,0,-63.654	1/1:40:0,40:0:0:40:1412:-127.377,-12.0412,0	1/1:34:0,34:0:0:34:1183:-106.773,-10.235,0	1/1:26:0,26:0:0:26:915:-82.6656,-7.82678,0	1/1:28:1,27:1:36:27:940:-81.3153,-4.83057,0	0/1:195:94,101:94:3342:101:3590:-264.608,0,-242.297	0/1:113:56,57:56:1974:57:1996:-145.889,0,-143.917	0/1:154:108,46:108:3862:46:1647:-102.159,0,-301.416	0/1:82:39,43:39:1396:43:1540:-114.209,0,-101.255	1/1:62:5,57:5:180:57:2033:-166.689,-2.1118,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:248:0,248:0:0:248:8786:-790.735,-74.6554,0	0/1:231:115,116:115:4110:116:4141:-303.336,0,-300.546	1/1:19:0,19:0:0:19:659:-59.6323,-5.71957,0	0/1:246:102,144:102:3630:144:5117:-386.621,0,-252.849	0/1:125:56,69:56:1983:69:2445:-182.674,0,-141.115	0/1:86:41,45:41:1456:45:1571:-115.788,0,-105.447	0/1:27:10,16:10:352:16:561:-42.7736,0,-23.9691	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	0/1:14:9,5:9:320:5:149:-9.48995,0,-24.9279	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	0/1:14:6,8:6:201:8:288:-22.053,0,-14.2026	1/1:117:0,117:0:0:117:4046:-364.333,-35.2205,0	1/1:216:0,216:0:0:216:7658:-689.261,-65.0225,0	1/1:40:0,40:0:0:40:1407:-126.926,-12.0412,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:131:0,131:0:0:131:4678:-420.953,-39.4349,0	0/1:23:9,14:9:311:14:500:-38.4125,0,-21.4	1/1:129:1,128:1:36:128:4592:-409.789,-35.2346,0	1/1:41:0,41:0:0:41:1444:-130.256,-12.3422,0	0/1:27:17,10:17:604:10:356:-24.2534,0,-46.5628	0/1:82:38,44:38:1330:44:1548:-114.925,0,-95.3067	1/1:153:0,153:0:0:153:5359:-482.45,-46.0576,0	0/1:213:107,106:107:3791:106:3777:-275.999,0,-277.269	1/1:121:0,121:0:0:121:4298:-386.998,-36.4246,0	1/1:175:1,174:1:36:174:6216:-555.937,-49.082,0	1/1:126:0,126:0:0:126:4502:-405.346,-37.9298,0	0/1:20:10,10:10:356:10:360:-26.7237,0,-26.3606	1/1:140:0,140:0:0:140:4998:-449.968,-42.1442,0	0/1:15:10,5:10:341:5:180:-12.0366,0,-26.5023	0/1:21:9,12:9:324:12:424:-32.1748,0,-23.1842	0/1:153:75,78:75:2663:78:2755:-202.134,0,-193.859	1/1:36:0,36:0:0:36:1271:-114.686,-10.8371,0	0/1:18:12,6:12:432:6:212:-14.0063,0,-33.8027	1/1:21:0,21:0:0:21:733:-66.2897,-6.32163,0	0/1:51:17,34:17:612:34:1215:-94.3032,0,-40.0609	1/1:68:0,68:0:0:68:2403:-216.525,-20.47,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:173:81,92:81:2883:92:3259:-241.449,0,-207.629	0/1:136:59,77:59:2101:77:2736:-205.526,0,-148.418	0/1:70:37,33:37:1309:33:1163:-83.8984,0,-97.0374	0/1:107:46,61:46:1620:61:2154:-161.914,0,-113.876	1/1:143:0,143:0:0:143:5061:-455.634,-43.0473,0	1/1:111:0,111:0:0:111:3948:-355.353,-33.4143,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:68:0,68:0:0:68:2417:-217.786,-20.47,0	0/1:31:14,17:14:496:17:604:-45.3587,0,-35.6423	1/1:10:0,10:0:0:10:352:-31.9896,-3.0103,0	1/1:77:0,77:0:0:77:2751:-247.832,-23.1793,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:95:0,95:0:0:95:3360:-302.616,-28.5979,0	1/1:176:0,176:0:0:176:6305:-567.536,-52.9813,0	0/1:88:42,46:42:1482:46:1616:-119.235,0,-107.182	1/1:161:3,158:3:100:158:5590:-493.894,-39.1354,0	0/1:16:12,4:12:432:4:136:-7.75906,0,-34.4047	0/1:118:49,69:49:1739:69:2442:-184.501,0,-121.272	0/1:108:54,54:54:1911:54:1892:-138.045,0,-139.753	1/1:156:0,156:0:0:156:5588:-503.042,-46.9607,0	0/1:57:29,28:29:1015:28:977:-70.97,0,-74.5021	1/1:38:0,38:0:0:38:1347:-121.529,-11.4391,0	1/1:20:1,19:1:36:19:660:-56.1228,-2.42233,0	0/1:63:33,30:33:1151:30:1065:-77.1957,0,-84.9304	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:46:26,20:26:905:20:712:-50.5593,0,-67.9154	0/1:40:22,18:22:773:18:644:-46.2494,0,-57.8483	1/1:36:0,36:0:0:36:1271:-114.692,-10.8371,0	0/1:70:31,39:31:1095:39:1372:-102.704,0,-77.787	0/1:29:19,10:19:667:10:352:-23.2883,0,-51.6248	1/1:94:0,94:0:0:94:3333:-300.184,-28.2968,0	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0
chr05	1455572	.	C	T	192719	PASS	AB=0.54099;ABP=74.9297;AC=144;AF=0.765957;AN=188;AO=8981;CIGAR=1X;DP=11269;DPB=11269;DPRA=0;EPP=19505;EPPR=4964.82;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.9933;MQMR=59.993;NS=94;NUMALT=1;ODDS=2.13069;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=322038;QR=81737;RO=2285;RPL=0;RPP=19505;RPPR=4964.82;RPR=8981;RUN=1;SAF=8981;SAP=19505;SAR=0;SRF=2285;SRP=4964.82;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:223:97,126:97:3467:126:4520:-339.837,0,-245.107	1/1:116:0,116:0:0:116:4168:-375.301,-34.9195,0	1/1:229:0,229:0:0:229:8219:-739.718,-68.9359,0	0/1:76:42,34:42:1508:34:1220:-87.0987,0,-113.132	0/1:54:16,38:16:568:38:1368:-107.165,0,-35.1962	0/1:126:40,85:40:1432:85:3052:-236.92,0,-91.1891	1/1:189:0,189:0:0:189:6792:-611.191,-56.8947,0	0/1:66:23,43:23:820:43:1521:-117.313,0,-54.2545	1/1:150:0,149:0:0:149:5352:-481.451,-44.8535,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:84:0,84:0:0:84:3024:-272.389,-25.2865,0	0/1:67:37,30:37:1324:30:1072:-76.6234,0,-99.2931	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:68:31,37:31:1112:37:1332:-99.7123,0,-79.9213	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:218:109,109:109:3916:109:3924:-287.726,0,-287.007	0/1:167:72,95:72:2553:95:3408:-256.662,0,-179.748	0/1:125:89,36:89:3184:36:1292:-78.955,0,-249.155	0/1:142:68,74:68:2431:74:2656:-196.539,0,-176.299	1/1:138:7,131:7:248:131:4704:-400.854,-18.8779,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	1/1:605:4,601:4:144:601:21541:-1924.82,-168.81,0	0/1:253:109,144:109:3899:144:5176:-389.817,0,-274.943	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:294:149,145:149:5324:145:5208:-380.354,0,-390.792	0/1:313:153,160:153:5460:160:5732:-421.774,0,-397.308	0/1:146:65,81:65:2332:81:2903:-217.554,0,-166.189	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:226:3,223:3:99:223:7995:-710.328,-58.7962,0	1/1:485:0,485:0:0:485:17370:-1562.92,-146,0	1/1:67:0,67:0:0:67:2386:-214.995,-20.169,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:138:2,136:2:72:136:4860:-430.718,-34.7054,0	0/1:44:18,26:18:644:26:932:-70.9535,0,-45.0453	1/1:210:0,210:0:0:210:7525:-677.288,-63.2163,0	1/1:108:0,108:0:0:108:3875:-348.943,-32.5112,0	0/1:57:25,32:25:900:32:1148:-86.4711,0,-64.1623	0/1:131:40,91:40:1428:91:3268:-254.905,0,-89.3826	1/1:135:0,135:0:0:135:4852:-436.832,-40.6391,0	0/1:208:72,136:72:2576:136:4859:-374.849,0,-169.475	1/1:189:0,189:0:0:189:6780:-610.271,-56.8947,0	1/1:217:0,217:0:0:217:7772:-699.51,-65.3235,0	1/1:173:0,173:0:0:173:6208:-558.815,-52.0782,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:150:0,150:0:0:150:5364:-482.892,-45.1545,0	0/1:45:19,26:19:680:26:932:-70.6525,0,-47.9828	0/1:14:7,7:7:248:7:244:-18.085,0,-18.4498	0/1:124:52,72:52:1851:72:2584:-195.481,0,-129.542	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	0/1:64:34,30:34:1212:30:1072:-77.5265,0,-90.1204	1/1:128:0,128:0:0:128:4600:-414.162,-38.5318,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:291:105,186:105:3756:186:6684:-514.033,0,-250.64	0/1:224:99,125:99:3536:125:4480:-335.938,0,-251.019	0/1:87:45,41:45:1612:41:1461:-105.683,0,-119.268	0/1:108:46,62:46:1648:62:2212:-166.834,0,-116.097	1/1:348:5,343:5:180:343:12290:-1089.38,-88.2064,0	1/1:134:1,133:1:36:133:4772:-426.037,-36.7397,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:80:0,80:0:0:80:2859:-257.547,-24.0824,0	0/1:82:40,42:40:1440:42:1504:-110.97,0,-105.213	1/1:28:0,28:0:0:28:991:-89.5027,-8.42884,0	1/1:135:0,135:0:0:135:4840:-435.753,-40.6391,0	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:203:0,203:0:0:203:7270:-654.349,-61.1091,0	1/1:219:0,219:0:0:219:7833:-704.995,-65.9256,0	0/1:152:86,66:86:3080:66:2368:-167.621,0,-231.672	1/1:146:1,145:1:36:145:5208:-465.258,-40.3521,0	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/1:177:81,96:81:2900:96:3442:-256.71,0,-207.954	0/1:144:75,69:75:2692:69:2476:-179.745,0,-199.176	1/1:222:0,222:0:0:222:7953:-715.789,-66.8287,0	0/1:117:44,73:44:1571:73:2628:-201.546,0,-106.46	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:108:0,108:0:0:108:3888:-350.112,-32.5112,0	0/1:154:76,78:76:2732:78:2800:-205.881,0,-199.764	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:82:48,34:48:1720:34:1224:-85.7826,0,-130.401	0/1:77:41,36:41:1476:36:1292:-93.4045,0,-109.957	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:72:37,35:37:1314:35:1256:-91.6711,0,-96.8861	0/1:64:41,23:41:1460:23:828:-55.5782,0,-112.43	1/1:141:1,140:1:36:140:5013:-447.717,-38.847,0	1/1:99:1,98:1:36:98:3520:-313.41,-26.2037,0
chr05	1480102	.	G	T	35718.9	PASS	AB=0.538381;ABP=52.1834;AC=45;AF=0.239362;AN=188;AO=2080;CIGAR=1X;DP=7747;DPB=7747;DPRA=1.23639;EPP=4510.99;EPPR=12306.6;GTI=1;LEN=1;MEANALT=1;MQM=59.9077;MQMR=59.9698;NS=94;NUMALT=1;ODDS=1.60819;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74407;QR=201188;RO=5666;RPL=1;RPP=4510.99;RPPR=12306.6;RPR=2079;RUN=1;SAF=0;SAP=4519.67;SAR=2080;SRF=0;SRP=12306.6;SRR=5666;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:35,26:35:1233:26:936:-66.1966,0,-92.909	0/1:31:21,10:21:730:10:360:-23.4124,0,-56.6842	0/0:202:202,0:202:7140:0:0:0,-60.8081,-642.66	0/0:258:257,1:257:9073:1:36:0,-74.0675,-812.94	0/1:83:48,35:48:1703:35:1255:-88.2698,0,-128.568	0/1:70:28,42:28:1004:42:1503:-114.493,0,-69.6038	0/1:101:55,46:55:1962:46:1656:-118.924,0,-146.45	0/0:111:110,1:110:3900:1:36:0,-29.8161,-347.594	0/1:107:45,62:45:1552:62:2228:-167.636,0,-107.565	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.442	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.78	0/1:59:22,37:22:788:37:1328:-102.061,0,-53.484	0/0:44:44,0:44:1550:0:0:0,-13.2453,-139.79	0/1:62:35,27:35:1235:27:972:-69.134,0,-92.7896	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:25:25,0:25:882:0:0:0,-7.52575,-79.6965	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:151:44,107:44:1580:107:3807:-297.371,0,-97.036	0/1:108:51,57:51:1759:57:2048:-152.076,0,-126.075	0/1:200:48,152:48:1711:152:5460:-431.316,0,-94.069	0/1:108:51,57:51:1819:57:2048:-152.08,0,-131.35	0/0:89:83,6:83:2953:6:212:0,-7.36687,-246.578	0/0:80:80,0:80:2863:0:0:0,-24.0824,-257.907	0/0:231:231,0:231:8227:0:0:0,-69.5379,-740.442	0/1:195:84,111:84:2984:111:3979:-299.598,0,-210.09	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/1:238:118,120:118:4224:120:4266:-312.472,0,-308.695	0/1:142:77,65:77:2753:65:2323:-166.44,0,-205.264	0/1:112:60,52:60:2143:52:1849:-132.955,0,-159.422	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:150:150,0:150:5340:0:0:0,-45.1545,-480.731	0/0:119:119,0:119:4250:0:0:0,-35.8226,-382.679	0/0:28:28,0:28:987:0:0:0,-8.42884,-89.143	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:143:143,0:143:5087:0:0:0,-43.0473,-457.97	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/0:137:137,0:137:4821:0:0:0,-41.2411,-434.037	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/1:47:22,25:22:780:25:870:-64.333,0,-56.3746	0/1:101:50,51:50:1747:51:1824:-134.037,0,-126.25	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/1:176:82,94:82:2898:94:3348:-248.554,0,-208.073	0/0:105:104,1:104:3673:1:36:0,-28.0103,-327.175	0/0:124:124,0:124:4418:0:0:0,-37.3277,-397.79	0/0:146:146,0:146:5240:0:0:0,-43.9504,-471.736	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:77:43,34:43:1531:34:1216:-86.5673,0,-114.903	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:130:52,78:52:1854:78:2786:-211.845,0,-128.004	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/1:12:3,9:3:108:9:312:-24.8024,0,-6.46281	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:70:41,29:41:1423:29:1029:-71.849,0,-107.288	0/0:65:64,1:64:2264:1:36:0,-15.9687,-200.425	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:186:90,96:90:3211:96:3429:-252.831,0,-233.221	0/1:198:84,114:84:2978:114:4096:-309.22,0,-208.649	0/1:33:20,13:20:707:13:468:-32.5257,0,-54.0206	0/1:61:37,24:37:1311:24:860:-59.359,0,-99.928	0/0:135:134,1:134:4750:1:36:0,-37.0408,-424.061	0/0:89:89,0:89:3164:0:0:0,-26.7917,-284.984	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/1:38:13,25:13:468:25:896:-69.5212,0,-31.0205	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:101:101,0:101:3585:0:0:0,-30.404,-322.855	0/0:76:76,0:76:2685:0:0:0,-22.8783,-241.892	0/0:121:121,0:121:4296:0:0:0,-36.4246,-386.818	0/0:126:126,0:126:4503:0:0:0,-37.9298,-405.436	0/1:147:64,83:64:2271:83:2954:-221.838,0,-160.401	0/0:111:111,0:111:3937:0:0:0,-33.4143,-354.521	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:105:46,59:46:1648:59:2119:-159.37,0,-117	0/1:160:69,91:69:2460:91:3251:-244.646,0,-173.49	0/0:273:272,0:272:9682:0:0:0,-81.8802,-870.972	0/1:55:31,24:31:1082:24:864:-61.5259,0,-81.1306	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.587	0/1:122:59,63:59:2069:63:2264:-166.021,0,-149.753	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/1:66:33,33:33:1163:33:1176:-86.2798,0,-85.108	0/1:49:26,23:26:927:23:828:-60.0936,0,-68.9969	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:42:19,23:19:680:23:828:-62.1927,0,-48.8859	0/1:49:20,29:20:702:29:1031:-78.3521,0,-48.752	0/0:122:122,0:122:4312:0:0:0,-36.7257,-388.257	0/0:68:68,0:68:2394:0:0:0,-20.47,-215.717
chr05	1480147	.	T	G	117284	PASS	AB=0.459722;ABP=56.7125;AC=144;AF=0.765957;AN=188;AO=5624;CIGAR=1X;DP=7697;DPB=7697;DPRA=0;EPP=12215.4;EPPR=4493.62;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.9518;MQMR=59.926;NS=94;NUMALT=1;ODDS=0.341998;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200407;QR=73912;RO=2068;RPL=5624;RPP=12215.4;RPPR=4493.62;RPR=0;RUN=1;SAF=0;SAP=12215.4;SAR=5624;SRF=0;SRP=4493.62;SRR=2068;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:26,35:26:932:35:1244:-93.9018,0,-65.836	0/1:32:10,22:10:360:22:784:-61.2428,0,-23.1113	1/1:200:0,200:0:0:200:7112:-640.145,-60.206,0	1/1:254:1,252:1:36:252:9015:-807.698,-72.9022,0	0/1:86:36,50:36:1296:50:1772:-133.872,0,-91.0554	0/1:71:41,30:41:1472:30:1072:-75.4193,0,-111.403	0/1:99:46,53:46:1629:53:1896:-141.116,0,-117.095	1/1:107:1,105:1:36:105:3764:-335.361,-28.6707,0	0/1:107:61,46:61:2188:46:1619:-113.774,0,-164.958	1/1:48:0,48:0:0:48:1720:-155.077,-14.4494,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:92:0,92:0:0:92:3258:-293.442,-27.6948,0	0/1:59:36,22:36:1292:22:784:-53.1027,0,-98.803	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	0/1:61:27,34:27:964:34:1194:-89.4009,0,-68.714	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:15:1,14:1:36:14:491:-40.9228,-0.917175,0	0/1:153:110,43:110:3952:43:1538:-92.6553,0,-309.813	0/1:111:58,53:58:2065:53:1849:-133.248,0,-152.705	0/1:195:149,46:149:5341:46:1640:-89.1878,0,-422.102	0/1:106:56,50:56:1993:50:1780:-128.549,0,-147.733	1/1:91:6,85:6:216:85:3025:-252.691,-7.60322,0	1/1:77:0,77:0:0:77:2748:-247.563,-23.1793,0	1/1:231:0,231:0:0:231:8204:-738.37,-69.5379,0	0/1:197:112,85:112:4032:85:3020:-212.729,0,-303.763	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:239:121,118:121:4329:118:4206:-306.776,0,-317.837	0/1:143:64,79:64:2296:79:2836:-212.429,0,-163.715	0/1:110:51,59:51:1801:59:2100:-156.156,0,-129.239	0/1:15:8,7:8:280:7:239:-17.3273,0,-21.0239	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:6,4:6:216:4:134:-9.37975,0,-16.7802	1/1:148:0,148:0:0:148:5286:-475.876,-44.5524,0	1/1:118:0,118:0:0:118:4209:-378.991,-35.5215,0	1/1:28:0,28:0:0:28:999:-90.2245,-8.42884,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:143:0,143:0:0:143:5091:-458.141,-43.0473,0	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	1/1:136:0,136:0:0:136:4834:-435.053,-40.9401,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	0/1:43:24,19:24:852:19:684:-48.946,0,-63.0331	0/1:101:52,49:52:1856:49:1724:-124.768,0,-136.916	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:177:96,81:96:3441:81:2883:-206.424,0,-256.618	1/1:103:0,103:0:0:103:3668:-330.325,-31.0061,0	1/1:124:0,124:0:0:124:4417:-397.704,-37.3277,0	1/1:148:1,147:1:36:147:5220:-466.343,-40.9542,0	0/1:11:3,8:3:108:8:279:-22.1368,0,-6.76384	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:77:34,43:34:1220:43:1522:-114.093,0,-86.9275	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:126:76,49:76:2724:49:1744:-119.256,0,-207.41	1/1:54:0,54:0:0:54:1908:-171.998,-16.2556,0	0/1:12:9,3:9:309:3:108:-6.46281,0,-24.5284	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:65:26,39:26:909:39:1396:-106.372,0,-62.5565	1/1:64:1,63:1:36:63:2247:-198.894,-15.6676,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:180:97,83:97:3472:83:2972:-213.527,0,-258.506	0/1:196:112,84:112:3967:84:2989:-210.239,0,-298.217	0/1:33:14,19:14:500:19:676:-51.234,0,-35.4022	0/1:62:24,37:24:841:37:1328:-101.1,0,-57.2841	1/1:130:1,129:1:36:129:4600:-410.568,-35.5356,0	1/1:88:0,88:0:0:88:3136:-282.467,-26.4906,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:11:0,11:0:0:11:390:-35.4385,-3.31133,0	0/1:37:24,13:24:864:13:460:-30.5973,0,-66.9445	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:102:0,102:0:0:102:3636:-327.446,-30.7051,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:122:0,122:0:0:122:4384:-394.732,-36.7257,0	1/1:128:0,128:0:0:128:4566:-411.107,-38.5318,0	0/1:147:83,64:83:2957:64:2280:-161.211,0,-222.111	1/1:111:0,111:0:0:111:3955:-356.143,-33.4143,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:105:58,47:58:2065:47:1680:-119.879,0,-154.511	0/1:158:90,68:90:3205:68:2408:-169.413,0,-241.11	1/1:268:0,268:0:0:268:9592:-863.235,-80.676,0	0/1:57:24,33:24:864:33:1176:-88.9885,0,-60.9239	1/1:32:0,32:0:0:32:1135:-102.459,-9.63296,0	1/1:36:0,36:0:0:36:1275:-115.048,-10.8371,0	0/1:123:63,60:63:2260:60:2139:-155.75,0,-165.698	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:64:33,31:33:1188:31:1112:-81.1254,0,-87.9627	0/1:47:22,25:22:788:25:887:-65.9997,0,-57.0964	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	0/1:42:22,20:22:788:20:703:-50.9503,0,-58.5982	0/1:49:29,20:29:1036:20:699:-48.4828,0,-78.8034	1/1:125:0,125:0:0:125:4441:-399.864,-37.6288,0	1/1:66:0,66:0:0:66:2358:-212.479,-19.868,0
chr05	1482563	.	C	T	184702	PASS	AB=0.455248;ABP=92.9961;AC=141;AF=0.758065;AN=186;AO=8743;CIGAR=1X;DP=11576;DPB=11576;DPRA=125.815;EPP=18988.2;EPPR=6152.62;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.8649;MQMR=59.8612;NS=93;NUMALT=1;ODDS=3.83176;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=311215;QR=101117;RO=2832;RPL=8743;RPP=18988.2;RPPR=6152.62;RPR=0;RUN=1;SAF=0;SAP=18988.2;SAR=8743;SRF=0;SRP=6152.62;SRR=2832;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:48,20:48:1701:20:716:-44.2977,0,-132.902	0/1:61:27,34:27:964:34:1216:-91.3837,0,-68.714	1/1:125:0,125:0:0:125:4440:-399.737,-37.6288,0	1/1:219:1,218:1:36:218:7728:-691.957,-62.3273,0	0/1:97:64,33:64:2277:33:1188:-78.024,0,-175.981	0/1:73:44,29:44:1560:29:1040:-71.9392,0,-118.716	0/1:160:69,91:69:2476:91:3264:-245.81,0,-174.929	1/1:155:0,155:0:0:155:5490:-494.227,-46.6597,0	0/1:95:45,50:45:1616:50:1769:-130.893,0,-117.099	1/1:112:1,111:1:36:111:3941:-351.285,-30.1171,0	1/1:186:0,186:0:0:186:6648:-598.391,-55.9916,0	1/1:155:0,155:0:0:155:5537:-498.426,-46.6597,0	0/1:129:51,78:51:1828:78:2793:-212.775,0,-125.968	1/1:204:0,204:0:0:204:7253:-652.802,-61.4101,0	0/1:119:64,55:64:2277:55:1956:-140.475,0,-169.364	1/1:109:0,109:0:0:109:3867:-348.139,-32.8123,0	1/1:116:0,116:0:0:116:4152:-373.81,-34.9195,0	1/1:103:0,103:0:0:103:3670:-330.369,-31.0061,0	1/1:86:0,86:0:0:86:3074:-276.889,-25.8886,0	0/1:173:97,76:97:3437:76:2700:-191.167,0,-257.466	0/1:155:91,64:91:3230:64:2246:-155.741,0,-244.246	0/1:120:77,43:77:2756:43:1532:-102.049,0,-212.142	0/1:101:66,35:66:2376:35:1248:-82.2208,0,-183.68	1/1:136:6,130:6:216:130:4627:-396.802,-21.1496,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	1/1:347:0,347:0:0:347:12273:-1104.17,-104.457,0	0/1:240:130,110:130:4648:110:3898:-278.76,0,-346.206	1/1:56:0,56:0:0:56:2008:-180.989,-16.8577,0	0/1:304:183,121:183:6505:121:4298:-295.427,0,-494.025	0/1:92:21,71:21:748:71:2506:-198.093,0,-39.9499	0/1:127:65,62:65:2324:62:2194:-159.492,0,-171.153	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:9:0,9:0:0:9:308:-28.0504,-2.70927,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:2,6:2:72:6:216:-17.0224,0,-4.06865	1/1:326:0,326:0:0:326:11646:-1048,-98.1358,0	1/1:167:0,167:0:0:167:5932:-533.987,-50.272,0	1/1:162:0,162:0:0:162:5796:-521.74,-48.7669,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:109:0,109:0:0:109:3854:-347.039,-32.8123,0	0/1:68:34,34:34:1216:34:1218:-89.4465,0,-89.2589	1/1:142:0,142:0:0:142:5075:-456.87,-42.7463,0	1/1:165:0,165:0:0:165:5896:-530.747,-49.67,0	0/1:91:50,41:50:1780:41:1456:-103.942,0,-133.089	0/1:131:56,75:56:2012:75:2638:-198.217,0,-141.918	1/1:127:0,127:0:0:127:4525:-407.418,-38.2308,0	0/1:212:101,111:101:3590:111:3931:-290.105,0,-259.401	1/1:113:0,113:0:0:113:4009:-360.993,-34.0164,0	1/1:69:0,69:0:0:69:2460:-221.655,-20.7711,0	1/1:227:0,227:0:0:227:8085:-727.658,-68.3338,0	0/1:8:6,2:6:216:2:61:-3.38479,0,-17.3823	1/1:123:0,123:0:0:123:4408:-396.892,-37.0267,0	0/1:74:41,33:41:1453:33:1161:-82.5185,0,-108.787	0/1:25:17,8:17:600:8:284:-18.3776,0,-46.8034	0/1:136:90,46:90:3216:46:1637:-106.674,0,-248.716	1/1:63:0,63:0:0:63:2218:-199.868,-18.9649,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:74:42,32:42:1500:32:1125:-79.1865,0,-113.009	1/1:253:4,249:4:144:249:8905:-788.111,-62.847,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:289:169,120:169:6018:120:4274:-297.838,0,-454.727	0/1:217:146,71:146:5240:71:2519:-161.551,0,-406.412	0/1:85:51,34:51:1832:34:1200:-82.6171,0,-139.562	0/1:84:48,36:48:1724:36:1292:-91.2972,0,-130.157	1/1:157:0,157:0:0:157:5593:-503.472,-47.2617,0	1/1:48:0,48:0:0:48:1704:-153.632,-14.4494,0	1/1:89:0,89:0:0:89:3174:-285.778,-26.7917,0	1/1:38:0,38:0:0:38:1349:-121.71,-11.4391,0	0/1:175:82,93:82:2921:93:3329:-246.989,0,-210.444	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:112:0,112:0:0:112:4004:-360.522,-33.7154,0	1/1:64:0,64:0:0:64:2273:-204.831,-19.2659,0	1/1:213:0,213:0:0:213:7605:-684.343,-64.1194,0	1/1:132:0,132:0:0:132:4693:-422.527,-39.736,0	0/1:111:82,29:82:2925:29:1013:-58.065,0,-229.961	1/1:84:0,84:0:0:84:2949:-265.625,-25.2865,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:146:72,74:72:2561:74:2660:-195.69,0,-186.779	0/1:81:53,28:53:1900:28:996:-65.5715,0,-146.894	1/1:333:2,331:2:72:331:11800:-1054.87,-93.4063,0	0/1:184:109,75:109:3900:75:2659:-184.163,0,-295.798	1/1:123:0,123:0:0:123:4408:-396.891,-37.0267,0	1/1:136:0,136:0:0:136:4871:-438.532,-40.9401,0	0/1:237:111,126:111:3972:126:4473:-331.352,0,-286.327	1/1:74:0,74:0:0:74:2639:-237.757,-22.2762,0	0/1:145:70,75:70:2494:75:2667:-196.599,0,-181.058	0/1:127:58,69:58:2088:69:2468:-184.143,0,-149.945	1/1:182:0,182:0:0:182:6471:-581.653,-54.7875,0	0/1:204:85,119:85:3040:119:4262:-321.706,0,-212.386	0/1:127:87,40:87:3116:40:1405:-88.5111,0,-242.407	1/1:142:0,142:0:0:142:5058:-455.359,-42.7463,0	1/1:183:0,183:0:0:183:6503:-585.351,-55.0885,0
chr05	1482565	.	G	A	45134.1	PASS	AB=0.532092;ABP=49.1435;AC=47;AF=0.25;AN=188;AO=2758;CIGAR=1X;DP=11706;DPB=11706;DPRA=1.0022;EPP=5991.93;EPPR=19409.5;GTI=1;LEN=1;MEANALT=1.02;MQM=59.8517;MQMR=59.8727;NS=94;NUMALT=1;ODDS=1.28561;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96129;QR=319589;RO=8937;RPL=2758;RPP=5991.93;RPPR=19409.5;RPR=0;RUN=1;SAF=0;SAP=5991.93;SAR=2758;SRF=0;SRP=19409.5;SRR=8937;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:21,43:21:752:43:1484:-114.587,0,-48.7403	0/1:62:36,26:36:1288:26:924:-64.8138,0,-97.5597	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.689	0/0:227:226,1:226:8088:1:36:0,-64.7355,-724.335	0/1:92:33,59:33:1184:59:2068:-158.688,0,-79.1689	0/1:70:29,41:29:1036:41:1433:-108.192,0,-72.4818	0/1:157:94,63:94:3368:63:2160:-147.408,0,-256.063	0/0:162:162,0:162:5787:0:0:0,-48.7669,-520.91	0/1:96:51,45:51:1824:45:1560:-111.763,0,-135.542	0/0:115:114,1:114:4076:1:36:0,-31.0202,-363.429	0/0:189:189,0:189:6768:0:0:0,-56.8947,-609.185	0/0:154:154,0:154:5507:0:0:0,-46.3586,-495.756	0/1:124:77,47:77:2756:47:1647:-111.189,0,-210.954	0/0:204:203,0:203:7246:0:0:0,-61.1091,-651.954	0/1:119:55,64:55:1972:64:2237:-165.771,0,-141.911	0/0:109:108,0:108:3863:0:0:0,-32.5112,-347.587	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.906	0/0:105:103,0:103:3678:0:0:0,-31.0061,-330.637	0/0:87:87,0:87:3102:0:0:0,-26.1896,-279.407	0/1:172:79,93:79:2789:93:3225:-238.702,0,-199.474	0/1:151:65,86:65:2324:86:3012:-225.851,0,-163.965	0/1:118:43,75:43:1544:75:2619:-200.432,0,-103.732	0/1:103:37,66:37:1320:66:2305:-176.705,0,-88.0959	0/0:137:131,6:131:4692:6:182:0,-24.5632,-405.76	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:357:357,0:357:12731:0:0:0,-107.468,-1145.42	0/1:241:116,125:116:4168:125:4330:-317.329,0,-302.741	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.826	0/1:295:124,171:124:4428:171:5909:-443.142,0,-309.866	0/1:95:72,23:72:2565:23:796:-43.3592,0,-202.498	0/1:125:62,63:62:2212:63:2118:-153.244,0,-161.714	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6197	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:332:331,0:331:11887:0:0:0,-99.6409,-1069.39	0/0:178:178,0:178:6325:0:0:0,-53.5833,-569.3	0/0:165:165,0:165:5890:0:0:0,-49.6699,-530.2	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:111:111,0:111:3949:0:0:0,-33.4143,-355.574	0/1:67:35,32:35:1256:32:1106:-79.6593,0,-93.1646	0/0:146:144,0:144:5140:0:0:0,-43.3483,-462.38	0/0:167:167,0:167:5988:0:0:0,-50.272,-539.023	0/1:93:42,51:42:1499:51:1804:-134.637,0,-107.208	0/1:131:74,57:74:2636:57:1960:-137.242,0,-198.039	0/0:129:129,0:129:4590:0:0:0,-38.8329,-413.263	0/1:210:110,100:110:3932:100:3501:-252.003,0,-290.773	0/0:115:115,0:115:4104:0:0:0,-34.6184,-368.272	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/0:238:238,0:238:8520:0:0:0,-71.6451,-766.786	0/1:8:2,6:2:72:6:208:-16.6508,0,-4.42602	0/0:129:129,0:129:4612:0:0:0,-38.8329,-415.244	0/1:78:37,41:37:1328:41:1440:-106.415,0,-96.3419	0/1:25:8,17:8:288:17:604:-47.1649,0,-18.7417	0/1:134:47,87:47:1692:87:3012:-230.936,0,-112.226	0/0:62:62,0:62:2186:0:0:0,-18.6639,-196.989	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:75:33,42:33:1176:42:1476:-110.549,0,-83.4772	0/0:256:253,3:253:9071:3:108:0,-66.9885,-806.28	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:285:118,166:118:4240:166:5788:-435.202,0,-295.925	0/1:213:71,142:71:2552:142:4975:-383.792,0,-165.724	0/1:84:35,49:35:1233:49:1712:-129.034,0,-85.8912	0/1:85:39,46:39:1392:46:1616:-120.142,0,-99.9915	0/0:162:162,0:162:5777:0:0:0,-48.7669,-520.024	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.319	0/0:92:91,0:91:3264:0:0:0,-27.3937,-293.594	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/1:178:94,84:94:3368:84:2961:-213.141,0,-249.595	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:113:113,0:113:4028:0:0:0,-34.0164,-362.71	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:218:218,0:218:7820:0:0:0,-65.6245,-703.707	0/0:134:134,0:134:4792:0:0:0,-40.338,-431.437	0/1:109:30,79:30:1076:79:2769:-216.506,0,-64.3406	0/0:86:85,0:85:3033:0:0:0,-25.5875,-272.97	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/1:150:78,72:78:2792:72:2516:-181.534,0,-206.361	0/1:84:31,53:31:1104:53:1856:-142.033,0,-74.3694	0/0:339:338,1:338:12092:1:32:0,-98.8499,-1084.77	0/1:196:82,114:82:2927:114:4024:-303.337,0,-204.662	0/0:128:128,0:128:4604:0:0:0,-38.5318,-414.522	0/0:138:138,0:138:4940:0:0:0,-41.5421,-444.739	0/1:243:128,115:128:4588:115:4005:-287.499,0,-339.886	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/1:142:76,66:76:2715:66:2307:-165.11,0,-201.82	0/1:130:74,56:74:2621:56:1929:-134.738,0,-197.003	0/0:185:185,0:185:6628:0:0:0,-55.6905,-596.574	0/1:201:120,81:120:4316:81:2845:-195.76,0,-326.987	0/1:124:42,82:42:1512:82:2854:-219.743,0,-99.0469	0/0:141:141,0:141:5017:0:0:0,-42.4452,-451.672	0/0:189:188,0:188:6748:0:0:0,-56.5936,-607.093
chr05	1485854	.	A	C	145960	PASS	AB=0.457393;ABP=78.5057;AC=144;AF=0.765957;AN=188;AO=7037;CIGAR=1X;DP=9674;DPB=9674;DPRA=0;EPP=15283.7;EPPR=5718.33;GTI=2;LEN=1;MEANALT=1.05319;MQM=51.1883;MQMR=59.8651;NS=94;NUMALT=1;ODDS=0.224487;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251725;QR=93830;RO=2632;RPL=0;RPP=15283.7;RPPR=5718.33;RPR=7037;RUN=1;SAF=7037;SAP=15283.7;SAR=0;SRF=2632;SRP=5718.33;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:34,38:34:1212:38:1360:-100.254,0,-87.7122	0/1:140:74,66:74:2648:66:2372:-170.251,0,-196.316	1/1:114:0,114:0:0:114:4075:-365.529,-34.3174,0	1/1:190:1,189:1:36:189:6783:-604.913,-53.5974,0	0/1:115:64,51:64:2270:51:1809:-127.93,0,-169.896	0/1:86:53,33:53:1900:33:1179:-79.893,0,-145.389	0/1:135:65,70:65:2272:70:2507:-184.079,0,-164.066	1/1:126:1,125:1:36:125:4466:-395.504,-34.3315,0	0/1:134:72,61:72:2565:61:2188:-155.841,0,-190.702	1/1:105:0,104:0:0:104:3728:-333.113,-31.3071,0	1/1:40:0,40:0:0:40:1436:-129.034,-12.0412,0	1/1:51:0,51:0:0:51:1824:-163.851,-15.3525,0	0/1:52:36,15:36:1292:15:540:-33.0071,0,-101.042	1/1:82:0,82:0:0:82:2935:-262.096,-24.6845,0	0/1:53:26,27:26:932:27:968:-70.9844,0,-68.2443	1/1:30:0,30:0:0:30:1072:-96.5546,-9.0309,0	1/1:52:0,52:0:0:52:1855:-166.059,-15.6536,0	1/1:36:0,36:0:0:36:1292:-116.207,-10.8371,0	1/1:11:0,11:0:0:11:392:-35.511,-3.31133,0	0/1:172:86,86:86:3076:86:3059:-222.356,0,-225.29	0/1:162:84,78:84:2989:78:2779:-200.935,0,-220.475	0/1:149:95,54:95:3408:54:1933:-128.737,0,-262.049	0/1:99:54,45:54:1932:45:1584:-112.344,0,-144.355	1/1:170:13,157:13:453:157:5633:-463.037,-10.0757,0	1/1:108:0,108:0:0:108:3875:-347.627,-32.5112,0	1/1:279:0,279:0:0:279:9992:-895.77,-83.9874,0	0/1:265:146,119:146:5221:119:4280:-303.576,0,-390.254	1/1:25:0,25:0:0:25:896:-80.7603,-7.52575,0	0/1:291:154,137:154:5467:137:4882:-349.681,0,-404.529	0/1:312:203,109:203:7220:109:3912:-257.027,0,-555.932	0/1:150:98,52:98:3482:52:1863:-121.448,0,-268.395	0/1:15:12,3:12:413:3:108:-5.53439,0,-32.9824	1/1:16:0,16:0:0:16:561:-50.5112,-4.81648,0	0/1:9:3,6:3:104:6:216:-16.8341,0,-6.99354	1/1:7:0,7:0:0:7:252:-22.7445,-2.10721,0	0/1:5:1,4:1:36:4:144:-11.7648,0,-2.09312	1/1:146:0,146:0:0:146:5231:-469.155,-43.9504,0	1/1:276:1,275:1:36:275:9802:-874.034,-79.486,0	1/1:26:0,26:0:0:26:936:-84.2823,-7.82678,0	1/1:7:0,7:0:0:7:248:-22.6112,-2.10721,0	1/1:187:7,180:7:252:180:6438:-554.582,-33.2637,0	0/1:20:9,11:9:309:11:396:-29.8717,0,-22.1201	1/1:169:0,169:0:0:169:6050:-541.66,-50.8741,0	1/1:56:0,56:0:0:56:2012:-180.639,-16.8577,0	0/1:63:46,17:46:1640:17:595:-34.5247,0,-128.924	0/1:71:34,37:34:1216:37:1322:-97.4082,0,-87.8157	1/1:144:0,144:0:0:144:5142:-460.933,-43.3483,0	0/1:261:152,109:152:5392:109:3887:-269.013,0,-406.84	1/1:128:0,128:0:0:128:4573:-410.226,-38.5318,0	1/1:171:1,170:1:36:170:6083:-541.789,-47.8779,0	1/1:103:0,103:0:0:103:3685:-329.958,-31.0061,0	0/1:7:4,3:4:144:3:104:-7.57532,0,-11.2064	1/1:116:0,116:0:0:116:4124:-369.324,-34.9195,0	0/1:34:23,11:23:816:11:392:-25.2995,0,-63.5151	0/1:31:14,17:14:474:17:600:-44.7883,0,-33.6478	0/1:108:45,63:45:1612:63:2268:-170.383,0,-112.858	1/1:64:0,64:0:0:64:2304:-205.468,-19.2659,0	0/1:12:8,4:8:288:4:140:-9.19743,0,-22.655	1/1:21:1,20:1:36:20:720:-61.3668,-2.72336,0	0/1:99:54,45:54:1925:45:1611:-115.115,0,-143.678	1/1:103:2,101:2:72:101:3628:-318.363,-24.1694,0	1/1:8:0,8:0:0:8:278:-25.0428,-2.40824,0	0/1:214:78,136:78:2770:136:4872:-372.223,0,-185.118	0/1:243:119,124:119:4246:124:4444:-325.373,0,-308.976	0/1:88:36,52:36:1292:52:1846:-137.628,0,-90.0916	0/1:120:54,66:54:1940:66:2368:-176.144,0,-138.323	1/1:163:2,160:2:72:160:5702:-503.01,-42.2894,0	1/1:75:2,73:2:72:73:2603:-226.933,-15.7405,0	1/1:13:0,13:0:0:13:455:-41.1873,-3.91339,0	1/1:77:0,76:0:0:76:2704:-242.118,-22.8783,0	0/1:77:49,28:49:1756:28:1008:-67.6302,0,-135.145	1/1:10:0,10:0:0:10:352:-31.5708,-3.0103,0	1/1:163:1,162:1:36:162:5770:-513.214,-45.4696,0	1/1:61:1,60:1:36:60:2156:-189.373,-14.7646,0	1/1:206:0,206:0:0:206:7357:-657.458,-62.0122,0	1/1:193:0,193:0:0:193:6924:-621.465,-58.0988,0	0/1:168:92,76:92:3304:76:2720:-191.782,0,-246.969	1/1:95:2,93:2:72:93:3336:-292.146,-21.791,0	0/1:36:15,21:15:536:21:752:-56.9565,0,-37.7377	0/1:135:64,71:64:2304:71:2544:-187.699,0,-166.981	0/1:134:83,51:83:2969:51:1832:-122.412,0,-226.991	1/1:239:1,238:1:36:238:8540:-761.273,-68.3479,0	0/1:96:41,55:41:1464:55:1976:-147.84,0,-103.157	1/1:40:0,40:0:0:40:1427:-127.866,-12.0412,0	1/1:61:0,61:0:0:61:2192:-196.507,-18.3628,0	0/1:130:76,54:76:2724:54:1936:-134.77,0,-204.907	1/1:37:0,37:0:0:37:1332:-119.494,-11.1381,0	0/1:67:41,26:41:1472:26:936:-63.9011,0,-112.606	0/1:57:31,26:31:1108:26:924:-65.8441,0,-82.8723	1/1:31:0,31:0:0:31:1108:-99.7875,-9.33193,0	0/1:49:28,21:28:984:21:740:-51.8382,0,-74.1165	0/1:52:40,12:40:1425:12:424:-22.5431,0,-112.892	1/1:199:0,199:0:0:199:7112:-636.285,-59.905,0	1/1:56:0,56:0:0:56:2014:-180.767,-16.8577,0
chr05	1485863	.	CAAA	CAAC,TAAC	255642	PASS	AB=0.452346,0.54472;ABP=98.4173,86.9128;AC=143,44;AF=0.760638,0.234043;AN=188;AO=7030,2661;CIGAR=3M1X,1X2M1X;DP=9727;DPB=9727.25;DPRA=0,1.28189;EPP=4154.31,13.4303;EPPR=6.91895;GTI=2;LEN=1,4;MEANALT=1.88298,2.35849;MQM=51.2499,59.8407;MQMR=53.2;NS=94;NUMALT=2;ODDS=1.04287;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=251378,94118;QR=148;RO=5;RPL=5348,1274;RPP=4154.31,13.4303;RPPR=6.91895;RPR=1682,1387;RUN=1,1;SAF=7030,2661;SAP=15268.5,5781.3;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:73:0,38,35:0:0:38,35:1350,1230:-209.763,-100.466,-89.0273,-109.649,0,-99.1128	1/2:140:0,66,74:0:0:66,74:2343,2628:-404.462,-214.476,-194.608,-190.34,0,-168.064	1/1:114:0,113,0:0:0:113,0:4048,0:-362.741,-34.0164,0,-362.741,-34.0164,-362.741	1/1:188:0,187,1:0:0:187,1:6724,36:-602.911,-56.2926,0,-599.974,-52.9954,-599.673	1/2:116:0,52,64:0:0:52,64:1859,2267:-336.003,-184.982,-169.329,-151.376,0,-132.11	1/2:86:0,32,54:0:0:32,54:1148,1922:-250.092,-157.001,-147.368,-93.4479,0,-77.1922	1/2:135:0,68,66:0:0:68,66:2440,2343:-389.233,-190.934,-170.464,-198.342,0,-178.474	1/1:125:0,124,0:0:0:124,0:4447,0:-397.243,-37.3277,0,-397.243,-37.3277,-397.243	1/2:136:0,60,76:0:0:60,76:2134,2695:-392.963,-219.917,-201.855,-173.4,0,-150.522	1/1:105:0,105,0:0:0:105,0:3717,0:-332.571,-31.6082,0,-332.571,-31.6082,-332.571	1/1:40:0,40,0:0:0:40,0:1432,0:-128.679,-12.0412,0,-128.679,-12.0412,-128.679	1/1:51:0,51,0:0:0:51,0:1823,0:-163.589,-15.3525,0,-163.589,-15.3525,-163.589	1/2:53:0,14,39:0:0:14,39:500,1358:-150.907,-110.285,-106.07,-40.9753,0,-29.2351	1/1:83:0,83,0:0:0:83,0:2961,0:-264.433,-24.9855,0,-264.433,-24.9855,-264.433	1/2:54:0,27,27:0:0:27,27:968,949:-156.054,-77.5963,-69.4685,-78.8112,0,-70.6834	1/1:31:0,31,0:0:0:31,0:1099,0:-98.9839,-9.33193,0,-98.9839,-9.33193,-98.9839	1/1:51:0,51,0:0:0:51,0:1821,0:-162.77,-15.3525,0,-162.77,-15.3525,-162.77	1/1:37:0,37,0:0:0:37,0:1332,0:-119.791,-11.1381,0,-119.791,-11.1381,-119.791	1/1:11:0,11,0:0:0:11,0:392,0:-35.511,-3.31133,0,-35.511,-3.31133,-35.511	1/2:173:0,85,88:0:0:85,88:3030,3132:-501.062,-255.615,-230.028,-245.802,0,-219.311	1/2:165:0,81,84:0:0:81,84:2900,2950:-476.12,-240.448,-216.065,-236.026,0,-210.739	1/2:150:0,53,96:0:0:53,96:1895,3388:-429.73,-275.996,-260.041,-153.847,0,-124.948	1/2:100:0,44,55:0:0:44,55:1552,1940:-283.623,-157.768,-144.522,-125.848,0,-109.291	1/1:173:0,159,13:0:0:159,13:5662,454:-506.931,-47.8638,0,-470.002,-10.8421,-466.089	1/1:110:1,109,0:1:25:109,0:3885,0:-345.92,-30.6134,0,-346.221,-32.8123,-348.168	1/1:279:0,278,0:0:0:278,0:9957,0:-892.233,-83.6863,0,-892.233,-83.6863,-892.233	1/2:263:0,117,146:0:0:117,146:4204,5197:-764.901,-423.923,-388.702,-341.335,0,-297.385	1/1:25:0,25,0:0:0:25,0:892,0:-80.4045,-7.52575,0,-80.4045,-7.52575,-80.4045	1/2:296:0,137,159:0:0:137,159:4877,5643:-855.447,-460.122,-418.881,-395.679,0,-347.815	1/2:318:1,111,204:1:29:111,204:3953,7177:-902.521,-581.944,-550.838,-318.586,0,-259.484	1/2:151:0,53,97:0:0:53,97:1900,3433:-433.367,-279.75,-263.795,-153.739,0,-124.539	1/2:16:0,4,12:0:0:4,12:140,410:-44.9796,-33.6148,-32.4107,-11.712,0,-8.09963	1/1:16:0,16,0:0:0:16,0:576,0:-51.8611,-4.81648,0,-51.8611,-4.81648,-51.8611	1/2:9:0,6,3:0:0:6,3:212,108:-26.2914,-9.17208,-7.3659,-17.476,0,-16.5729	0/1:7:1,6,0:1:36:6,0:216,0:-17.3981,0,-1.49106,-17.6992,-3.29724,-20.6373	1/2:5:0,4,1:0:0:4,1:144,36:-15.0035,-3.29724,-2.09312,-12.0659,0,-11.7648	1/1:146:0,146,0:0:0:146,0:5222,0:-468.308,-43.9504,0,-468.308,-43.9504,-468.308	1/1:279:0,279,0:0:0:279,0:9932,0:-889.598,-83.9874,0,-889.598,-83.9874,-889.598	1/1:26:0,26,0:0:0:26,0:932,0:-83.9281,-7.82678,0,-83.9281,-7.82678,-83.9281	1/1:7:0,7,0:0:0:7,0:248,0:-22.6112,-2.10721,0,-22.6112,-2.10721,-22.6112	1/1:185:0,177,7:0:0:177,7:6348,246:-569.317,-53.2823,0,-549.294,-33.1932,-547.187	1/2:20:0,11,9:0:0:11,9:396,324:-59.0181,-26.7966,-23.4853,-32.581,0,-29.8717	1/1:169:0,168,0:0:0:168,0:5986,0:-536.578,-50.573,0,-536.578,-50.573,-536.578	1/1:56:0,56,0:0:0:56,0:2016,0:-180.994,-16.8577,0,-180.994,-16.8577,-180.994	1/2:63:0,16,45:0:0:16,45:572,1587:-175.797,-129.296,-124.479,-46.5733,0,-33.0269	1/2:71:0,37,34:0:0:37,34:1332,1212:-206.797,-98.5933,-87.4552,-108.56,0,-98.3251	1/1:144:0,142,0:0:0:142,0:5083,0:-455.387,-42.7463,0,-455.387,-42.7463,-455.387	1/2:260:0,108,151:0:0:108,151:3869,5350:-749.25,-435.823,-403.311,-313.423,0,-267.967	1/1:130:0,130,0:0:0:130,0:4651,0:-417.029,-39.1339,0,-417.029,-39.1339,-417.029	1/1:171:0,169,0:0:0:169,0:6080,0:-545.167,-50.8741,0,-545.167,-50.8741,-545.167	1/1:104:0,104,0:0:0:104,0:3689,0:-330.477,-31.3071,0,-330.477,-31.3071,-330.477	1/2:7:0,2,5:0:0:2,5:72,179:-20.8141,-14.9552,-14.3532,-6.21747,0,-4.71232	1/1:118:0,118,0:0:0:118,0:4231,0:-378.667,-35.5215,0,-378.667,-35.5215,-378.667	1/2:35:0,11,24:0:0:11,24:396,844:-101.269,-69.0443,-65.733,-32.581,0,-25.3562	1/2:30:0,16,14:0:0:16,14:576,488:-86.6546,-40.0349,-35.2184,-46.9722,0,-42.7578	1/2:109:1,62,46:1:28:62,46:2228,1624:-310.082,-130.1,-113.654,-178.138,0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chr05	1501894	.	A	G	254366	PASS	AB=0.486818;ABP=15.4331;AC=145;AF=0.771277;AN=188;AO=12173;CIGAR=1X;DP=16438;DPB=16438;DPRA=0;EPP=26436.3;EPPR=9240.45;GTI=2;LEN=1;MEANALT=1.11702;MQM=59.8672;MQMR=59.9939;NS=94;NUMALT=1;ODDS=2.53025;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=434030;QR=151572;RO=4254;RPL=0;RPP=26436.3;RPPR=9240.45;RPR=12173;RUN=1;SAF=12173;SAP=26436.3;SAR=0;SRF=4254;SRP=9240.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:52,13:52:1864:13:468:-22.7015,0,-148.472	0/1:268:154,114:154:5483:114:4081:-286.798,0,-412.919	1/1:181:0,181:0:0:181:6440:-579.687,-54.4864,0	1/1:445:0,445:0:0:445:15877:-1428.6,-133.958,0	0/1:190:91,98:91:3253:98:3508:-258.671,0,-235.735	0/1:138:72,66:72:2561:66:2300:-165.713,0,-189.197	0/1:300:169,131:169:6022:131:4662:-329.432,0,-451.775	1/1:195:0,195:0:0:195:6923:-623.132,-58.7009,0	0/1:237:150,87:150:5392:87:3105:-208.332,0,-414.061	1/1:201:0,201:0:0:201:7208:-648.748,-60.507,0	1/1:58:0,58:0:0:58:2088:-188.187,-17.4597,0	1/1:87:0,87:0:0:87:3097:-278.926,-26.1896,0	0/1:81:42,39:42:1512:39:1404:-102.276,0,-111.991	1/1:77:1,76:1:36:76:2728:-242.164,-19.581,0	0/1:91:43,48:43:1533:48:1720:-127.689,0,-110.867	1/1:71:0,71:0:0:71:2544:-229.204,-21.3731,0	1/1:79:0,79:0:0:79:2836:-255.461,-23.7814,0	1/1:45:0,45:0:0:45:1616:-145.481,-13.5464,0	1/1:54:0,54:0:0:54:1940:-174.848,-16.2556,0	0/1:487:228,259:228:8128:259:9260:-686.722,0,-584.931	0/1:349:161,188:161:5772:188:6718:-499.614,0,-414.535	0/1:229:162,67:162:5744:67:2404:-147.681,0,-448.14	0/1:223:110,113:110:3914:113:4041:-296.747,0,-285.322	1/1:208:17,191:17:597:191:6803:-558.25,-8.55812,0	1/1:141:0,141:0:0:141:5041:-453.828,-42.4452,0	1/1:586:0,586:0:0:586:20846:-1875.6,-176.404,0	0/1:478:242,236:242:8635:236:8426:-614.45,0,-633.251	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:558:233,325:233:8235:325:11659:-881.193,0,-573.188	0/1:174:95,78:95:3363:78:2770:-197.101,0,-250.446	0/1:402:151,251:151:5404:251:8938:-683.392,0,-365.477	0/1:38:18,20:18:629:20:720:-53.6896,0,-45.4946	1/1:27:0,27:0:0:27:955:-86.2637,-8.12781,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:25:0,25:0:0:25:896:-80.9599,-7.52575,0	0/1:41:17,24:17:612:24:856:-65.0189,0,-43.0712	1/1:249:0,249:0:0:249:8854:-796.82,-74.9565,0	1/1:285:2,283:2:72:283:10098:-901.743,-78.9568,0	1/1:89:0,89:0:0:89:3188:-287.13,-26.7917,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:183:1,182:1:36:182:6517:-583.009,-51.4902,0	0/1:58:31,27:31:1112:27:948:-68.1726,0,-82.9316	1/1:242:0,242:0:0:242:8638:-777.414,-72.8493,0	1/1:123:0,123:0:0:123:4367:-393.189,-37.0267,0	0/1:86:41,45:41:1445:45:1604:-118.762,0,-104.455	0/1:226:122,104:122:4364:104:3694:-264.628,0,-324.884	1/1:221:0,220:0:0:220:7848:-705.982,-66.2266,0	0/1:392:216,176:216:7611:176:6260:-445.481,0,-567.028	1/1:245:0,245:0:0:245:8728:-785.509,-73.7524,0	1/1:295:1,294:1:36:294:10501:-941.325,-85.2056,0	1/1:146:1,145:1:36:145:5151:-459.486,-40.3521,0	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	1/1:218:0,218:0:0:218:7793:-701.391,-65.6245,0	0/1:95:48,47:48:1716:47:1669:-121.895,0,-126.128	0/1:69:38,30:38:1356:30:1068:-75.6023,0,-101.511	0/1:310:164,146:164:5835:146:5179:-372.923,0,-431.942	1/1:126:0,125:0:0:125:4450:-400.31,-37.6288,0	0/1:29:19,10:19:669:10:356:-23.6514,0,-51.8041	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:134:71,63:71:2552:63:2252:-162.599,0,-189.584	1/1:130:1,129:1:36:129:4611:-411.547,-35.5356,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:369:188,180:188:6680:180:6350:-460.25,0,-490.137	0/1:286:170,116:170:6077:116:4099:-282.965,0,-460.937	0/1:126:62,63:62:2224:63:2249:-164.47,0,-162.436	0/1:170:93,77:93:3291:77:2739:-195.574,0,-245.232	1/1:341:7,334:7:252:334:11938:-1051.24,-79.6223,0	1/1:217:2,215:2:72:215:7597:-676.914,-58.4868,0	1/1:32:0,32:0:0:32:1152:-103.985,-9.63296,0	1/1:144:0,144:0:0:144:5105:-459.539,-43.3483,0	0/1:104:39,65:39:1392:65:2313:-177.116,0,-94.2719	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:162:0,162:0:0:162:5796:-521.75,-48.7669,0	1/1:151:1,150:1:36:150:5360:-478.908,-41.8573,0	1/1:348:1,346:1:36:346:12323:-1105.19,-101.219,0	1/1:382:0,381:0:0:381:13643:-1227.28,-114.692,0	0/1:148:86,62:86:3072:62:2205:-154.161,0,-232.157	1/1:158:0,158:0:0:158:5646:-506.238,-47.5627,0	0/1:32:16,16:16:557:16:564:-41.4491,0,-40.8226	0/1:259:146,113:146:5194:113:4052:-286.898,0,-389.633	0/1:259:128,131:128:4562:131:4665:-341.956,0,-332.777	1/1:400:0,398:0:0:398:14161:-1273.52,-119.81,0	0/1:118:66,52:66:2364:52:1856:-131.798,0,-177.497	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:108:0,108:0:0:108:3853:-346.966,-32.5112,0	0/1:204:92,112:92:3285:112:4017:-300.174,0,-234.458	1/1:61:0,61:0:0:61:2150:-193.747,-18.3628,0	0/1:90:42,48:42:1508:48:1705:-126.324,0,-108.922	0/1:85:34,51:34:1220:51:1816:-138.114,0,-84.5193	1/1:31:0,31:0:0:31:1107:-99.9402,-9.33193,0	0/1:110:39,71:39:1404:71:2545:-195.744,0,-93.546	0/1:108:69,39:69:2457:39:1383:-92.254,0,-188.872	1/1:301:0,301:0:0:301:10706:-963.407,-90.61,0	1/1:128:0,128:0:0:128:4523:-407.233,-38.5318,0
chr05	1501912	.	C	T	296023	PASS	AB=0.485158;ABP=18.7379;AC=145;AF=0.771277;AN=188;AO=12149;CIGAR=1X;DP=16420;DPB=16420;DPRA=0;EPP=14317.1;EPPR=9130.23;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.8517;MQMR=59.9984;NS=94;NUMALT=1;ODDS=1.51346;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=434507;QR=152614;RO=4267;RPL=1598;RPP=14329.9;RPPR=9130.23;RPR=10551;RUN=1;SAF=12147;SAP=26366.9;SAR=2;SRF=4267;SRP=9268.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:53,13:53:1908:13:462:-21.9907,0,-152.13	0/1:275:156,119:156:5584:119:4272:-301.874,0,-419.9	1/1:183:0,183:0:0:183:6549:-589.454,-55.0885,0	1/1:439:0,439:0:0:439:15692:-1411.84,-132.152,0	0/1:188:91,97:91:3259:97:3471:-255.816,0,-236.936	0/1:141:73,68:73:2611:68:2422:-175.715,0,-192.792	0/1:302:172,130:172:6163:130:4629:-325.86,0,-463.856	1/1:195:1,194:1:36:194:6911:-618.449,-55.1026,0	0/1:234:149,85:149:5326:85:3034:-202.848,0,-409.029	1/1:202:0,202:0:0:202:7219:-649.745,-60.8081,0	1/1:57:0,57:0:0:57:2048:-184.589,-17.1587,0	1/1:89:0,89:0:0:89:3187:-287.021,-26.7917,0	0/1:80:41,39:41:1476:39:1404:-102.577,0,-109.054	1/1:74:0,74:0:0:74:2651:-238.835,-22.2762,0	0/1:91:43,48:43:1548:48:1728:-128.409,0,-112.219	1/1:68:0,68:0:0:68:2448:-220.567,-20.47,0	1/1:78:0,78:0:0:78:2796:-251.869,-23.4803,0	1/1:46:0,46:0:0:46:1656:-149.079,-13.8474,0	1/1:54:0,54:0:0:54:1935:-174.409,-16.2556,0	0/1:486:227,258:227:8148:258:9231:-684.355,0,-586.973	0/1:352:161,191:161:5746:191:6819:-507.818,0,-411.294	0/1:227:161,65:161:5748:65:2328:-141.387,0,-449.046	0/1:218:113,105:113:4040:105:3745:-271.625,0,-298.164	1/1:207:16,191:16:576:191:6832:-562.76,-10.1382,0	1/1:137:0,137:0:0:137:4912:-442.225,-41.2411,0	1/1:595:0,595:0:0:595:21286:-1915.19,-179.113,0	0/1:474:242,232:242:8643:232:8321:-606.18,0,-635.178	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:557:233,323:233:8350:323:11575:-873.884,0,-583.771	0/1:177:98,79:98:3485:79:2818:-200.562,0,-260.579	0/1:411:160,250:160:5730:250:8953:-681.889,0,-392.033	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2753	1/1:25:0,25:0:0:25:894:-80.7801,-7.52575,0	1/1:4:0,4:0:0:4:133:-12.2976,-1.20412,0	1/1:24:0,24:0:0:24:864:-78.0822,-7.22472,0	0/1:40:17,23:17:608:23:794:-59.7321,0,-43.0108	1/1:250:1,249:1:36:249:8911:-798.336,-71.6592,0	1/1:288:2,286:2:72:286:10218:-912.625,-79.8599,0	1/1:89:0,89:0:0:89:3200:-288.202,-26.7917,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:181:1,180:1:36:180:6460:-577.881,-50.8882,0	0/1:57:31,26:31:1108:26:936:-67.3915,0,-82.8723	1/1:241:0,241:0:0:241:8628:-776.504,-72.5482,0	1/1:126:0,126:0:0:126:4505:-405.557,-37.9298,0	0/1:85:40,45:40:1432:45:1616:-120.142,0,-103.59	0/1:223:122,101:122:4376:101:3612:-258.157,0,-326.883	1/1:216:0,216:0:0:216:7740:-696.63,-65.0225,0	0/1:383:211,172:211:7514:172:6141:-437.484,0,-561.012	1/1:245:0,245:0:0:245:8748:-787.31,-73.7524,0	1/1:296:1,295:1:36:295:10541:-944.969,-85.5066,0	1/1:148:1,147:1:36:147:5245:-468.39,-40.9542,0	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	1/1:220:0,220:0:0:220:7860:-707.424,-66.2266,0	0/1:96:48,48:48:1711:48:1728:-126.904,0,-125.376	0/1:67:37,30:37:1323:30:1080:-77.3442,0,-99.2023	0/1:306:160,146:160:5703:146:5200:-376.008,0,-421.273	1/1:123:0,123:0:0:123:4412:-397.251,-37.0267,0	0/1:26:17,9:17:612:9:324:-21.6791,0,-47.5867	1/1:40:0,40:0:0:40:1421:-128.185,-12.0412,0	0/1:133:68,65:68:2448:65:2340:-170.816,0,-180.537	1/1:129:2,127:2:72:127:4524:-400.474,-31.9961,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:369:191,178:191:6794:178:6368:-461.749,0,-500.454	0/1:286:170,116:170:6092:116:4164:-288.842,0,-462.286	0/1:126:61,65:61:2192:65:2313:-170.474,0,-159.616	0/1:170:94,76:94:3364:76:2720:-193.86,0,-251.801	1/1:339:7,332:7:252:332:11849:-1043.24,-79.0202,0	1/1:214:2,212:2:68:212:7605:-678.007,-57.9627,0	1/1:34:0,34:0:0:34:1216:-109.741,-10.235,0	1/1:145:0,145:0:0:145:5195:-467.627,-43.6494,0	0/1:101:39,62:39:1396:62:2232:-170.733,0,-95.5351	1/1:36:0,36:0:0:36:1273:-114.871,-10.8371,0	1/1:166:0,166:0:0:166:5905:-531.545,-49.971,0	1/1:153:2,151:2:72:151:5381:-477.57,-39.2209,0	1/1:348:1,347:1:36:347:12394:-1111.41,-101.16,0	1/1:390:0,390:0:0:390:13974:-1257.42,-117.402,0	0/1:149:89,60:89:3180:60:2160:-149.811,0,-241.571	1/1:157:0,157:0:0:157:5612:-503.67,-47.2617,0	0/1:32:15,17:15:536:17:604:-45.0495,0,-38.9419	0/1:266:148,118:148:5291:118:4240:-301.699,0,-396.251	0/1:259:127,132:127:4510:132:4698:-344.207,0,-328.101	1/1:403:1,402:1:36:402:14387:-1290.78,-117.717,0	0/1:120:66,54:66:2348:54:1930:-137.852,0,-175.456	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:103:1,102:1:36:102:3632:-323.486,-27.4078,0	0/1:204:93,111:93:3344:111:3967:-295.673,0,-239.766	1/1:58:0,58:0:0:58:2058:-185.485,-17.4597,0	0/1:89:41,48:41:1459:48:1715:-127.526,0,-104.814	0/1:84:35,49:35:1256:49:1740:-131.579,0,-88.0588	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:108:39,69:39:1400:69:2469:-189.71,0,-93.7879	0/1:108:70,38:70:2516:38:1364:-90.5449,0,-194.18	1/1:295:0,295:0:0:295:10539:-948.38,-88.8039,0	1/1:128:0,128:0:0:128:4566:-411.099,-38.5318,0
chr05	1503829	.	A	C	99531.4	PASS	AB=0.477927;ABP=16.2392;AC=143;AF=0.760638;AN=188;AO=5012;CIGAR=1X;DP=6669;DPB=6669;DPRA=14.4761;EPP=10886.4;EPPR=3592.45;GTI=0;LEN=1;MEANALT=1.04348;MQM=60;MQMR=59.9819;NS=94;NUMALT=1;ODDS=0.639533;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172322;QR=59260;RO=1653;RPL=5012;RPP=10886.4;RPPR=3592.45;RPR=0;RUN=1;SAF=5012;SAP=10886.4;SAR=0;SRF=1653;SRP=3592.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:13,21:13:464:21:734:-56.1454,0,-31.8625	0/1:52:23,29:23:820:29:974:-72.3067,0,-58.469	1/1:222:0,222:0:0:222:7735:-696.196,-66.8287,0	1/1:169:1,168:1:36:168:5804:-518.885,-47.2758,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:55:24,31:24:860:31:1073:-80.3184,0,-61.1652	1/1:66:0,66:0:0:66:2347:-211.489,-19.868,0	0/1:78:36,42:36:1292:42:1422:-104.787,0,-93.1034	1/1:52:0,52:0:0:52:1833:-165.248,-15.6536,0	1/1:37:0,37:0:0:37:1230:-110.994,-11.1381,0	1/1:69:1,68:1:36:68:2249:-199.068,-17.1728,0	0/1:53:25,28:25:900:28:960:-70.7531,0,-65.3664	1/1:41:0,41:0:0:41:1354:-122.145,-12.3422,0	0/1:69:22,47:22:788:47:1587:-122.345,0,-50.4737	1/1:50:0,50:0:0:50:1615:-145.624,-15.0515,0	1/1:39:0,39:0:0:39:1347:-121.525,-11.7402,0	1/1:22:0,22:0:0:22:737:-66.6413,-6.62266,0	1/1:30:0,30:0:0:30:1016:-91.7439,-9.0309,0	0/1:162:73,88:73:2616:88:3055:-226.355,0,-186.862	0/1:128:70,58:70:2512:58:1994:-141.198,0,-187.8	0/1:89:62,27:62:2214:27:906:-55.053,0,-172.732	0/1:100:55,45:55:1976:45:1567:-111.214,0,-148.012	1/1:48:3,45:3:104:45:1526:-127.922,-4.74663,0	1/1:47:0,47:0:0:47:1592:-143.562,-14.1484,0	1/1:178:0,178:0:0:178:6186:-556.856,-53.5833,0	0/1:185:101,84:101:3612:84:2877:-203.478,0,-269.596	1/1:20:0,20:0:0:20:661:-59.7981,-6.0206,0	0/1:224:113,111:113:4047:111:3842:-278.549,0,-296.986	0/1:78:40,38:40:1436:38:1326:-96.1553,0,-106.057	0/1:95:35,60:35:1260:60:2115:-162.021,0,-85.1076	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:29:0,29:0:0:29:1012:-91.3885,-8.72987,0	0/1:26:8,18:8:279:18:636:-49.7413,0,-17.6208	1/1:132:0,132:0:0:132:4508:-405.897,-39.736,0	1/1:71:0,71:0:0:71:2464:-222.014,-21.3731,0	1/1:35:0,35:0:0:35:1143:-103.158,-10.5361,0	1/1:8:0,8:0:0:8:265:-24.1721,-2.40824,0	1/1:97:1,96:1:36:96:3308:-294.34,-25.6016,0	0/1:22:11,11:11:392:11:384:-28.272,0,-28.9974	1/1:125:0,125:0:0:125:4302:-387.361,-37.6288,0	1/1:34:0,34:0:0:34:1195:-107.855,-10.235,0	0/1:48:25,23:25:900:23:787:-56.6957,0,-66.8716	0/1:91:44,47:44:1580:47:1630:-119.59,0,-115.098	1/1:56:0,56:0:0:56:1923:-173.342,-16.8577,0	0/1:126:82,43:82:2935:43:1511:-98.3791,0,-226.484	1/1:87:0,87:0:0:87:2963:-266.898,-26.1896,0	1/1:134:1,133:1:36:133:4623:-412.64,-36.7397,0	1/1:100:0,100:0:0:100:3426:-308.553,-30.103,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	1/1:77:0,77:0:0:77:2621:-236.135,-23.1793,0	0/1:57:37,20:37:1332:20:699:-46.0737,0,-103.024	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:148:75,73:75:2687:73:2543:-184.566,0,-197.522	1/1:29:0,29:0:0:29:985:-88.9533,-8.72987,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:44:17,27:17:608:27:940:-71.6655,0,-41.8067	1/1:69:0,69:0:0:69:2344:-211.217,-20.7711,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:182:90,92:90:3240:92:3212:-234.516,0,-237.033	0/1:103:65,38:65:2336:38:1269:-83.4926,0,-179.493	0/1:53:30,23:30:1076:23:780:-54.5569,0,-81.1983	0/1:82:49,33:49:1760:33:1129:-77.2253,0,-133.999	1/1:117:0,117:0:0:117:4083:-367.661,-35.2205,0	1/1:113:4,109:4:140:109:3765:-326.109,-21.0718,0	1/1:24:0,24:0:0:24:848:-76.6397,-7.22472,0	1/1:32:0,32:0:0:32:1093:-98.6714,-9.63296,0	0/1:21:10,11:10:360:11:384:-28.573,0,-26.4227	1/1:9:0,9:0:0:9:307:-27.9602,-2.70927,0	1/1:88:0,88:0:0:88:3077:-277.159,-26.4906,0	1/1:62:1,61:1:36:61:2120:-187.469,-15.0656,0	1/1:93:0,93:0:0:93:3179:-286.335,-27.9958,0	1/1:145:0,145:0:0:145:5075:-456.902,-43.6494,0	0/1:52:29,23:29:1044:23:807:-57.2956,0,-78.6212	1/1:92:1,91:1:36:91:3144:-279.588,-24.0965,0	0/1:17:8,9:8:288:9:307:-22.8427,0,-21.1499	0/1:75:35,40:35:1260:40:1406:-104.258,0,-91.1282	0/1:151:85,66:85:3043:66:2215:-154.151,0,-228.58	1/1:183:0,183:0:0:183:6337:-570.433,-55.0885,0	0/1:35:25,10:25:900:10:352:-21.4821,0,-70.785	1/1:56:0,56:0:0:56:1888:-170.194,-16.8577,0	1/1:32:0,32:0:0:32:1044:-94.2534,-9.63296,0	0/1:87:42,45:42:1491:45:1543:-112.968,0,-108.294	1/1:24:0,24:0:0:24:813:-73.4785,-7.22472,0	0/1:67:35,32:35:1256:32:1078:-77.1513,0,-93.1763	0/1:72:47,25:47:1684:25:824:-52.7901,0,-130.173	1/1:50:0,50:0:0:50:1723:-155.351,-15.0515,0	0/1:65:35,30:35:1252:30:1018:-72.3559,0,-93.4181	0/1:62:32,29:32:1152:29:962:-68.1573,0,-85.2675	1/1:131:0,130:0:0:130:4342:-390.603,-39.1339,0	1/1:76:1,75:1:36:75:2573:-228.221,-19.28,0
chr05	1520190	.	G	A	10555.1	PASS	AB=0.252194;ABP=1887.45;AC=45;AF=0.239362;AN=188;AO=896;CIGAR=1X;DP=6760;DPB=6760;DPRA=1.3493;EPP=1530.88;EPPR=11230.9;GTI=8;LEN=1;MEANALT=1.02174;MQM=59.7902;MQMR=59.9986;NS=94;NUMALT=1;ODDS=0.934726;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32117;QR=209321;RO=5861;RPL=51;RPP=1530.88;RPPR=11230.9;RPR=845;RUN=1;SAF=0;SAP=1948.65;SAR=896;SRF=0;SRP=12730;SRR=5861;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:18,5:18:640:5:180:-9.62652,0,-51.0056	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:89:75,14:75:2688:14:500:-18.5432,0,-215.373	0/0:134:134,0:134:4793:0:0:0,-40.338,-431.525	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:62:43,19:43:1540:19:680:-42.8653,0,-120.229	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/1:96:73,23:73:2628:23:824:-45.58,0,-207.868	0/0:144:144,0:144:5146:0:0:0,-43.3483,-463.281	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:99:64,35:64:2287:35:1259:-83.8136,0,-176.289	0/1:89:71,18:71:2513:18:648:-31.8602,0,-199.63	0/1:64:45,19:45:1598:19:680:-42.2632,0,-124.843	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:41:41,0:41:1467:0:0:0,-12.3422,-132.325	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.821	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:76:59,17:59:2112:17:612:-32.4486,0,-167.471	0/0:139:139,0:139:4943:0:0:0,-41.8432,-445.02	0/1:77:54,23:54:1920:23:824:-51.1838,0,-149.898	0/1:78:59,19:59:2116:19:684:-38.4076,0,-167.228	0/1:34:30,4:30:1076:4:144:-3.07702,0,-86.9178	0/0:32:32,0:32:1130:0:0:0,-9.63296,-102.007	0/0:207:207,0:207:7400:0:0:0,-62.3132,-666.045	0/1:130:102,28:102:3625:28:1004:-51.5394,0,-287.319	0/1:45:35,10:35:1223:10:360:-19.198,0,-96.8237	0/1:179:138,41:138:4944:41:1457:-77.5396,0,-391.225	0/1:113:89,24:89:3160:24:864:-44.0662,0,-250.608	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:168:168,0:168:6036:0:0:0,-50.573,-543.341	0/0:86:86,0:86:3042:0:0:0,-25.8886,-274.011	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:87:62,25:62:2215:25:896:-54.7677,0,-173.424	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	0/1:96:74,21:74:2634:21:756:-39.4016,0,-208.349	0/1:59:41,18:41:1448:18:648:-40.8911,0,-112.852	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:99:78,21:78:2796:21:752:-38.1972,0,-222.078	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:114:114,0:114:4071:0:0:0,-34.3174,-366.577	0/0:68:66,0:66:2346:0:0:0,-19.868,-211.039	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:104:84,20:84:3016:20:711:-33.0085,0,-240.363	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:153:96,57:96:3456:57:2039:-137.724,0,-265.193	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:365:277,88:277:9882:88:3159:-174.658,0,-779.437	0/1:129:99,30:99:3506:30:1076:-58.32,0,-276.917	0/1:63:44,19:44:1584:19:684:-42.9254,0,-123.887	0/1:45:34,11:34:1178:11:392:-22.068,0,-92.7739	0/0:121:121,0:121:4324:0:0:0,-36.4246,-389.334	0/1:133:106,27:106:3803:27:959:-46.5884,0,-302.429	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	0/1:51:38,13:38:1360:13:468:-27.1071,0,-107.348	0/1:110:80,30:80:2865:30:1076:-64.0396,0,-224.972	0/1:45:37,8:37:1323:8:288:-12.7211,0,-105.825	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:154:154,0:154:5514:0:0:0,-46.3586,-496.384	0/1:69:54,15:54:1924:15:540:-28.0887,0,-152.666	0/0:167:167,0:167:5951:0:0:0,-50.272,-535.698	0/1:10:7,3:7:243:3:108:-7.06487,0,-19.1972	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:72:61,11:61:2180:11:396:-14.3086,0,-174.792	0/0:140:140,0:140:4991:0:0:0,-42.1442,-449.337	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/1:60:46,14:46:1647:14:504:-27.6363,0,-130.456	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:163:118,45:118:4186:45:1620:-97.0221,0,-327.854	0/1:30:24,6:24:864:6:216:-10.7596,0,-69.0517	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:110:85,25:85:2993:25:900:-48.2044,0,-236.487	0/1:130:85,45:85:3033:45:1593:-104.524,0,-234.065	0/0:181:180,1:180:6443:1:36:0,-50.8882,-576.358	0/0:95:94,1:94:3375:1:36:0,-24.9996,-300.366
chr05	1542646	.	G	C	210249	PASS	AB=0.435742;ABP=180.22;AC=145;AF=0.77957;AN=186;AO=8182;CIGAR=1X;DP=11005;DPB=11005;DPRA=0;EPP=7.77576;EPPR=6126.56;GTI=2;LEN=1;MEANALT=1.02151;MQM=47.1959;MQMR=59.9674;NS=93;NUMALT=1;ODDS=1.51728;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=292958;QR=100241;RO=2820;RPL=43;RPP=17398.5;RPPR=13.0176;RPR=8139;RUN=1;SAF=4201;SAP=15.8555;SAR=3981;SRF=1353;SRP=13.0176;SRR=1467;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:27,35:27:968:35:1243:-80.5962,0,-68.7735	0/1:55:13,42:13:464:42:1504:-106.644,0,-25.5409	1/1:100:1,99:1:36:99:3551:-285.322,-26.5047,0	1/1:332:2,330:2:72:330:11785:-999.502,-93.1052,0	0/1:125:57,68:57:2044:68:2444:-173.547,0,-146.603	0/1:53:33,20:33:1184:20:716:-42.2138,0,-90.9066	0/1:187:98,89:98:3464:89:3156:-209.726,0,-255.681	1/1:89:0,89:0:0:89:3185:-260.07,-26.7917,0	0/1:93:35,58:35:1248:58:2071:-141.689,0,-84.6291	1/1:202:0,202:0:0:202:7231:-626.788,-60.8081,0	1/1:89:0,89:0:0:89:3192:-275.939,-26.7917,0	1/1:77:0,77:0:0:77:2768:-225.923,-23.1793,0	0/1:53:19,34:19:680:34:1220:-84.5021,0,-45.5746	1/1:97:0,97:0:0:97:3475:-301.704,-29.1999,0	0/1:105:48,57:48:1724:57:2052:-140.138,0,-123.837	1/1:98:0,98:0:0:98:3508:-303.993,-29.5009,0	1/1:24:0,24:0:0:24:864:-69.9457,-7.22472,0	1/1:32:0,32:0:0:32:1148:-94.4036,-9.63296,0	1/1:30:0,30:0:0:30:1076:-88.692,-9.0309,0	0/1:295:172,123:172:6111:123:4420:-290.766,0,-461.29	0/1:172:100,72:100:3549:72:2588:-171.998,0,-267.842	0/1:214:165,49:165:5876:49:1760:-88.4187,0,-464.532	0/1:156:78,78:78:2773:78:2792:-189.77,0,-202.85	1/1:203:13,190:13:460:190:6816:-548.073,-19.3737,0	1/1:133:0,133:0:0:133:4751:-398.571,-40.037,0	1/1:252:0,252:0:0:252:8991:-779.096,-75.8596,0	0/1:221:169,52:169:6005:52:1853:-94.0501,0,-473.802	1/1:64:0,64:0:0:64:2300:-197.111,-19.2659,0	0/1:230:204,26:204:7251:26:932:-10.3476,0,-583.407	0/1:153:103,50:103:3660:50:1771:-108.231,0,-283.549	0/1:165:96,69:96:3423:69:2463:-162.493,0,-258.614	1/1:5:0,5:0:0:5:180:-15.3483,-1.50515,0	1/1:19:0,19:0:0:19:684:-55.0955,-5.71957,0	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:396:-32.4692,-3.31133,0	0/1:7:1,6:1:36:6:216:-15.7467,0,-1.49106	1/1:309:1,308:1:36:308:11048:-942.986,-89.42,0	1/1:147:3,144:3:108:144:5164:-443.077,-34.1762,0	1/1:32:0,32:0:0:32:1148:-92.6151,-9.63296,0	1/1:9:0,9:0:0:9:324:-29.185,-2.70927,0	1/1:174:2,172:2:72:172:6164:-526.895,-45.5425,0	0/1:48:20,28:20:708:28:999:-72.1707,0,-49.5962	1/1:247:0,247:0:0:247:8856:-751.737,-74.3544,0	1/1:114:0,114:0:0:114:4092:-350.333,-34.3174,0	0/1:102:49,53:49:1739:53:1900:-131.087,0,-126.089	0/1:154:79,75:79:2805:75:2677:-183.166,0,-206.331	1/1:49:0,49:0:0:49:1764:-144.068,-14.7505,0	0/1:264:126,136:126:4450:136:4876:-345.186,0,-321.483	1/1:144:0,144:0:0:144:5113:-438.751,-43.3483,0	1/1:164:0,164:0:0:164:5892:-513.902,-49.3689,0	1/1:154:0,154:0:0:154:5497:-468.119,-46.3586,0	0/1:9:3,6:3:104:6:216:-15.952,0,-6.99354	1/1:61:0,61:0:0:61:2180:-178.513,-18.3628,0	0/1:82:57,25:57:2020:25:891:-53.1304,0,-157.389	1/1:2:0,2:0:0:2:72:-6.26269,-0.60206,0	0/1:185:98,87:98:3464:87:3128:-215.864,0,-256.286	1/1:109:0,108:0:0:108:3845:-329.596,-32.5112,0	0/1:5:3,2:3:108:2:72:-5.04728,0,-8.57002	1/1:21:0,21:0:0:21:756:-64.9708,-6.32163,0	0/1:132:66,66:66:2351:66:2356:-165.172,0,-172.113	1/1:128:1,127:1:36:127:4540:-389.406,-34.9336,0	1/1:10:0,10:0:0:10:352:-31.4736,-3.0103,0	0/1:214:146,68:146:5187:68:2411:-145.643,0,-402.55	0/1:236:131,105:131:4657:105:3752:-254.443,0,-348.25	0/1:113:64,49:64:2261:49:1760:-118.568,0,-169.735	0/1:57:51,6:51:1806:6:216:-2.25537,0,-145.662	1/1:227:1,226:1:36:226:8085:-690.947,-64.7355,0	1/1:172:6,166:6:201:166:5956:-481.865,-33.3601,0	1/1:62:0,62:0:0:62:2228:-192.831,-18.6639,0	1/1:52:0,52:0:0:52:1853:-149.519,-15.6536,0	0/1:99:40,59:40:1424:59:2120:-155.122,0,-98.6555	1/1:13:0,13:0:0:13:468:-40.0047,-3.91339,0	1/1:100:0,100:0:0:100:3579:-290.63,-30.103,0	1/1:75:0,75:0:0:75:2696:-221.79,-22.5773,0	1/1:344:0,344:0:0:344:12340:-1064.72,-103.554,0	1/1:153:0,153:0:0:153:5500:-471.463,-46.0576,0	0/1:68:32,36:32:1152:36:1292:-84.7739,0,-83.5201	1/1:48:0,48:0:0:48:1711:-141.173,-14.4494,0	0/1:3:2,1:2:72:1:36:-2.34307,0,-5.93363	0/1:152:69,83:69:2464:83:2984:-213.17,0,-176.258	0/1:40:26,14:26:928:14:504:-29.2757,0,-71.0179	1/1:359:0,359:0:0:359:12835:-1096.22,-108.07,0	0/1:93:41,52:41:1426:52:1864:-133.234,0,-100.603	1/1:104:0,104:0:0:104:3740:-322.229,-31.3071,0	1/1:120:0,120:0:0:120:4299:-374.618,-36.1236,0	0/1:239:117,122:117:4166:122:4352:-302.024,0,-303.177	1/1:8:0,8:0:0:8:288:-23.9707,-2.40824,0	0/1:43:15,28:15:532:28:1000:-70.1715,0,-35.2688	0/1:34:20,14:20:720:14:495:-30.8584,0,-54.8938	1/1:46:0,46:0:0:46:1656:-143.959,-13.8474,0	0/1:125:60,65:60:2144:65:2328:-165.287,0,-155.599	0/1:98:53,45:53:1892:45:1592:-107.97,0,-141.057	1/1:272:4,268:4:144:268:9603:-815.912,-68.5665,0	1/1:178:0,178:0:0:178:6391:-548.057,-53.5833,0
chr05	1564471	.	A	C	14424.2	PASS	AB=0.532341;ABP=42.0564;AC=48;AF=0.255319;AN=188;AO=2325;CIGAR=1X;DP=8516;DPB=8516;DPRA=1.10775;EPP=5051.68;EPPR=13444.4;GTI=5;LEN=1;MEANALT=1.02041;MQM=23.7252;MQMR=21.4305;NS=94;NUMALT=1;ODDS=0.181964;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83284;QR=221722;RO=6190;RPL=0;RPP=5051.68;RPPR=13444.4;RPR=2325;RUN=1;SAF=2325;SAP=5051.68;SAR=0;SRF=6190;SRP=13444.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:94:38,56:38:1368:56:2008:-77.0405,0,-53.1153	0/1:65:22,43:22:792:43:1544:-61.6338,0,-27.6663	0/0:115:115,0:115:4140:0:0:0,-34.6184,-245.898	0/0:204:204,0:204:7328:0:0:0,-61.4101,-368.935	0/1:57:13,44:13:468:44:1580:-72.5911,0,-7.72345	0/1:47:19,28:19:650:28:1008:-38.6422,0,-25.8301	0/1:147:63,84:63:2268:84:3020:-142.283,0,-68.8303	0/0:116:116,0:116:4153:0:0:0,-34.9195,-247.563	0/1:180:76,104:76:2706:104:3720:-141.731,0,-108.506	0/0:103:103,0:103:3704:0:0:0,-31.0061,-188.518	0/0:60:60,0:60:2141:0:0:0,-18.0618,-108.347	0/0:147:147,0:147:5269:0:0:0,-44.2514,-316.524	0/1:135:64,71:64:2274:71:2552:-94.016,0,-96.4186	0/0:53:53,0:53:1904:0:0:0,-15.9546,-100.412	0/1:91:39,52:39:1404:52:1868:-87.9237,0,-43.0653	0/0:72:72,0:72:2562:0:0:0,-21.6742,-136.826	0/0:37:37,0:37:1313:0:0:0,-11.1381,-78.8372	0/0:48:48,0:48:1713:0:0:0,-14.4494,-102.369	0/0:47:47,0:47:1692:0:0:0,-14.1484,-103.382	0/1:217:112,105:112:3983:105:3764:-164.283,0,-136.784	0/1:187:90,97:90:3232:97:3480:-141.5,0,-114.446	0/1:73:33,40:33:1188:40:1424:-73.8444,0,-37.3947	0/1:95:46,49:46:1656:49:1760:-79.7991,0,-54.9159	0/0:52:50,2:50:1785:2:72:0,-11.3237,-89.6291	0/0:68:68,0:68:2448:0:0:0,-20.47,-128.942	0/0:192:192,0:192:6908:0:0:0,-57.7978,-345.701	0/1:306:150,156:150:5380:156:5580:-225.835,0,-194.559	0/0:40:40,0:40:1440:0:0:0,-12.0412,-76.8795	0/1:253:131,122:131:4700:122:4388:-212.023,0,-159.734	0/1:80:45,35:45:1616:35:1252:-47.7018,0,-60.6153	0/1:119:71,48:71:2522:48:1720:-69.9723,0,-93.6594	1/1:7:1,6:1:36:6:216:-10.4472,-0.0206252,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-9.82807	0/1:4:3,1:3:108:1:36:-0.882465,0,-5.44176	0/0:3:3,0:3:108:0:0:0,-0.90309,-6.64588	1/1:16:1,15:1:36:15:528:-26.1951,-2.44295,0	0/0:257:257,0:257:9248:0:0:0,-77.3647,-463.719	0/0:74:74,0:74:2664:0:0:0,-22.2762,-139.434	0/0:53:53,0:53:1893:0:0:0,-15.9546,-113.05	0/0:5:5,0:5:180:0:0:0,-1.50515,-9.59829	0/0:129:129,0:129:4621:0:0:0,-38.8329,-244.753	0/1:42:12,30:12:432:30:1080:-48.5929,0,-10.3612	0/0:147:147,0:147:5250:0:0:0,-44.2514,-281.768	0/0:70:70,0:70:2516:0:0:0,-21.0721,-126.795	0/1:69:31,38:31:1112:38:1358:-61.7888,0,-35.6785	0/1:130:65,65:65:2317:65:2328:-114.976,0,-78.1767	0/0:83:83,0:83:2969:0:0:0,-24.9855,-177.102	0/1:126:66,60:66:2372:60:2152:-92.8948,0,-81.7235	0/0:112:112,0:112:4005:0:0:0,-33.7154,-202.718	0/0:85:85,0:85:3052:0:0:0,-25.5875,-153.481	0/0:94:94,0:94:3376:0:0:0,-28.2968,-169.161	0/1:7:4,3:4:144:3:108:-4.80013,0,-5.25332	0/0:80:80,0:80:2857:0:0:0,-24.0824,-171.574	0/1:54:27,27:27:968:27:964:-47.7694,0,-32.6171	0/1:7:2,5:2:72:5:176:-7.47312,0,-2.4025	0/1:149:70,79:70:2516:79:2820:-116.035,0,-88.6031	0/0:54:53,1:53:1889:1:36:0,-13.7887,-92.83	0/1:4:3,1:3:108:1:36:-1.44448,0,-4.36601	0/0:6:6,0:6:216:0:0:0,-1.80618,-10.9413	0/1:112:50,62:50:1800:62:2207:-92.1122,0,-61.4249	0/0:84:82,2:82:2944:2:72:0,-20.5994,-143.076	0/0:3:3,0:3:108:0:0:0,-0.90309,-5.57013	0/1:115:62,53:62:2228:53:1896:-90.6589,0,-76.5711	0/1:120:59,61:59:2108:61:2169:-98.397,0,-70.0866	0/1:97:41,56:41:1464:56:2008:-86.0415,0,-48.9707	0/1:60:28,32:28:1004:32:1148:-53.1905,0,-32.6892	0/0:137:133,4:133:4753:4:144:0,-32.1136,-232.012	0/1:143:36,107:36:1281:107:3840:-192.863,0,-21.8354	0/0:47:47,0:47:1692:0:0:0,-14.1484,-88.9889	0/0:105:105,0:105:3772:0:0:0,-31.6081,-225.345	0/1:55:26,29:26:936:29:1036:-51.8682,0,-30.2806	0/0:11:11,0:11:381:0:0:0,-3.31133,-19.674	0/0:121:121,0:121:4344:0:0:0,-36.4246,-258.614	0/0:102:102,0:102:3645:0:0:0,-30.7051,-218.451	0/0:133:133,0:133:4743:0:0:0,-40.037,-252.698	0/0:66:66,0:66:2338:0:0:0,-19.868,-118.663	0/1:73:37,36:37:1332:36:1292:-46.3393,0,-57.3007	0/0:74:74,0:74:2615:0:0:0,-22.2762,-157.067	1/1:8:1,7:1:36:7:252:-10.9806,-0.0347097,0	0/1:51:25,26:25:885:26:916:-37.8909,0,-31.5458	0/1:108:59,49:59:2090:49:1760:-59.7853,0,-92.9177	0/0:190:190,0:190:6825:0:0:0,-57.1957,-341.633	0/1:67:31,36:31:1116:36:1284:-59.2822,0,-37.5314	0/0:98:98,0:98:3524:0:0:0,-29.5009,-177.379	0/0:58:58,0:58:2073:0:0:0,-17.4597,-103.824	0/1:168:80,87:80:2876:87:3110:-139.515,0,-94.1809	0/0:29:29,0:29:1040:0:0:0,-8.72987,-62.1529	0/1:89:46,43:46:1656:43:1540:-54.9093,0,-71.7098	0/1:101:59,42:59:2109:42:1512:-48.6775,0,-95.4631	0/0:44:44,0:44:1580:0:0:0,-13.2453,-83.5806	0/1:108:43,65:43:1548:65:2328:-99.3947,0,-49.225	0/1:93:32,61:32:1137:61:2192:-106.421,0,-30.0598	0/0:131:131,0:131:4659:0:0:0,-39.4349,-236.955	0/0:143:143,0:143:5132:0:0:0,-43.0473,-257.28
chr05	1567529	.	A	C	148021	PASS	AB=0.454968;ABP=90.2358;AC=143;AF=0.760638;AN=188;AO=7150;CIGAR=1X;DP=9875;DPB=9875;DPRA=0;EPP=15529;EPPR=5911.59;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.9827;MQMR=59.9912;NS=94;NUMALT=1;ODDS=0.191212;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=254017;QR=97259;RO=2721;RPL=1;RPP=15520.4;RPPR=5902.9;RPR=7149;RUN=1;SAF=1;SAP=15520.4;SAR=7149;SRF=1;SRP=5902.9;SRR=2720;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:91:59,31:59:2112:31:1072:-69.333,0,-162.897	0/1:205:98,107:98:3511:107:3836:-283.725,0,-254.488	1/1:143:0,143:0:0:143:5107:-459.766,-43.0473,0	1/1:258:0,258:0:0:258:9183:-826.443,-77.6657,0	0/1:113:51,62:51:1828:62:2205:-164.697,0,-130.784	0/1:68:44,24:44:1584:24:851:-56.4394,0,-122.381	0/1:111:56,55:56:2003:55:1953:-142.631,0,-147.129	1/1:223:2,221:2:68:221:7908:-705.285,-60.672,0	0/1:83:40,43:40:1410:43:1531:-113.097,0,-102.208	1/1:105:0,105:0:0:105:3732:-336.081,-31.6082,0	1/1:38:0,38:0:0:38:1339:-120.809,-11.4391,0	1/1:36:0,36:0:0:36:1274:-114.961,-10.8371,0	0/1:38:19,18:19:684:18:635:-45.9794,0,-50.3924	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:59:31,28:31:1116:28:972:-70.0284,0,-82.9909	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:17:0,17:0:0:17:595:-53.8767,-5.11751,0	0/1:216:109,107:109:3911:107:3783:-275.642,0,-287.159	0/1:160:94,66:94:3344:66:2355:-164.044,0,-253.011	0/1:171:125,45:125:4454:45:1586:-91.4941,0,-349.496	0/1:132:75,57:75:2659:57:2037:-143.864,0,-199.818	1/1:124:5,119:5:180:119:4210:-362.53,-20.7757,0	1/1:65:0,65:0:0:65:2320:-209.061,-19.567,0	1/1:357:1,356:1:36:356:12619:-1131.95,-103.869,0	0/1:228:116,112:116:4151:112:4007:-292.184,0,-305.138	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:350:174,176:174:6243:176:6255:-457.684,0,-456.602	0/1:250:125,125:125:4491:125:4409:-321.721,0,-329.099	0/1:212:106,106:106:3791:106:3796:-278.02,0,-277.57	0/1:11:7,4:7:233:4:136:-9.26421,0,-17.9752	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:11:8,3:8:288:3:104:-6.39148,0,-22.9561	1/1:95:0,95:0:0:95:3374:-303.877,-28.5979,0	1/1:300:0,299:0:0:299:10635:-956.735,-90.008,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:196:4,192:4:144:192:6844:-602.718,-45.6883,0	0/1:41:25,16:25:887:16:561:-38.4749,0,-67.8059	1/1:193:1,192:1:36:192:6834:-611.533,-54.5005,0	1/1:46:0,46:0:0:46:1609:-145.097,-13.8474,0	0/1:59:33,26:33:1167:26:903:-63.823,0,-87.5756	0/1:134:70,64:70:2499:64:2264:-163.683,0,-184.824	1/1:177:1,176:1:36:176:6272:-560.977,-49.684,0	0/1:176:91,85:91:3247:85:2993:-216.428,0,-239.47	1/1:148:0,148:0:0:148:5246:-472.28,-44.5524,0	1/1:148:1,147:1:36:147:5252:-469.217,-40.9542,0	1/1:175:0,175:0:0:175:6240:-561.697,-52.6803,0	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	1/1:145:0,145:0:0:145:5178:-466.16,-43.6494,0	0/1:50:18,32:18:648:32:1125:-86.5043,0,-43.6004	0/1:24:15,9:15:525:9:320:-21.9176,0,-40.3533	0/1:154:79,75:79:2840:75:2651:-192.472,0,-209.479	1/1:76:0,76:0:0:76:2681:-241.533,-22.8783,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:82:61,21:61:2196:21:740:-42.2389,0,-173.221	1/1:45:1,44:1:36:44:1563:-137.363,-9.94808,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:286:129,157:129:4623:157:5601:-418.117,0,-330.138	0/1:218:114,104:114:4100:104:3690:-266.677,0,-303.559	0/1:91:62,29:62:2199:29:1036:-65.9699,0,-170.779	0/1:102:40,62:40:1436:62:2197:-167.29,0,-98.8326	1/1:214:4,210:4:144:210:7483:-660.2,-51.1068,0	0/1:166:114,52:114:4087:52:1840:-115.907,0,-318.044	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	1/1:81:0,81:0:0:81:2882:-259.616,-24.3834,0	0/1:53:35,18:35:1256:18:635:-41.5224,0,-97.3907	1/1:20:0,20:0:0:20:705:-63.7728,-6.0206,0	1/1:166:2,164:2:68:164:5781:-513.943,-43.5133,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:169:1,168:1:36:168:5957:-532.64,-47.2758,0	1/1:201:0,201:0:0:201:7166:-644.996,-60.507,0	0/1:131:76,55:76:2732:55:1949:-136.249,0,-206.687	1/1:141:1,140:1:36:140:4917:-439.084,-38.847,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:145:78,67:78:2792:67:2376:-170.447,0,-207.871	0/1:116:60,56:60:2117:56:1999:-145.264,0,-155.875	1/1:230:0,230:0:0:230:8183:-736.486,-69.2369,0	0/1:68:46,22:46:1640:22:788:-50.7748,0,-127.419	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	0/1:98:59,39:59:2103:39:1373:-94.3656,0,-160.038	1/1:32:0,32:0:0:32:1127:-101.737,-9.63296,0	0/1:56:33,23:33:1161:23:779:-53.5631,0,-87.9368	0/1:51:32,19:32:1139:19:676:-45.8155,0,-87.4659	1/1:18:0,18:0:0:18:632:-57.2068,-5.41854,0	0/1:45:30,15:30:1061:15:513:-32.9465,0,-82.253	0/1:45:35,10:35:1235:10:356:-18.8349,0,-97.9071	1/1:150:1,149:1:36:149:5309:-474.347,-41.5562,0	1/1:57:0,57:0:0:57:2032:-183.152,-17.1587,0
chr05	1666119	.	T	A	113922	PASS	AB=0.557388;ABP=89.7431;AC=141;AF=0.758065;AN=186;AO=5358;CIGAR=1X;DP=6708;DPB=6708;DPRA=0;EPP=11637.8;EPPR=2917.15;GTI=3;LEN=1;MEANALT=1;MQM=59.9504;MQMR=59.9304;NS=93;NUMALT=1;ODDS=3.88003;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191248;QR=48288;RO=1350;RPL=0;RPP=11637.8;RPPR=2917.15;RPR=5358;RUN=1;SAF=5358;SAP=11637.8;SAR=0;SRF=1350;SRP=2934.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:24,39:24:864:39:1400:-107.334,0,-59.1177	0/1:47:17,30:17:608:30:1045:-80.2088,0,-40.9036	1/1:136:0,136:0:0:136:4851:-436.746,-40.9401,0	1/1:204:0,204:0:0:204:7273:-654.616,-61.4101,0	0/1:42:20,22:20:716:22:792:-58.9624,0,-52.1245	0/1:40:11,29:11:396:29:1040:-81.8732,0,-23.9369	0/1:83:35,48:35:1256:48:1705:-128.748,0,-88.3598	1/1:104:0,104:0:0:104:3716:-334.634,-31.3071,0	0/1:96:41,55:41:1460:55:1961:-147.856,0,-102.769	1/1:55:1,54:1:36:54:1928:-170.198,-12.9584,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:59:30,29:30:1071:29:1044:-76.514,0,-78.9408	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	0/1:48:19,29:19:684:29:1044:-79.8254,0,-47.4409	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:21:0,21:0:0:21:756:-68.3668,-6.32163,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:89:34,55:34:1209:55:1976:-151.323,0,-82.3225	0/1:107:49,58:49:1760:58:2062:-153.638,0,-126.474	0/1:66:36,30:36:1280:30:1080:-77.6453,0,-95.6353	0/1:81:39,42:39:1400:42:1478:-108.928,0,-101.915	1/1:47:1,46:1:36:46:1648:-145.01,-10.5501,0	1/1:68:0,68:0:0:68:2424:-218.416,-20.47,0	1/1:145:1,144:1:36:144:5125:-457.791,-40.0511,0	0/1:187:85,102:85:3040:102:3627:-270.335,0,-216.91	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:202:78,124:78:2808:124:4423:-337.427,0,-192.151	0/1:112:48,64:48:1704:64:2292:-172.826,0,-119.931	0/1:126:42,84:42:1508:84:3012:-233.381,0,-98.0848	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:24:1,23:1:36:23:807:-69.3501,-3.62645,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:105:0,105:0:0:105:3768:-339.316,-31.6082,0	1/1:115:0,115:0:0:115:4075:-366.935,-34.6185,0	1/1:16:0,16:0:0:16:568:-51.4513,-4.81648,0	.:.:.:.:.:.:.:.	1/1:226:3,223:3:108:223:7956:-705.98,-57.9576,0	0/1:17:10,7:10:360:7:248:-17.5467,0,-27.6268	1/1:137:0,137:0:0:137:4908:-441.871,-41.2411,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	0/1:116:59,57:59:2120:57:2044:-149.312,0,-156.149	1/1:134:0,134:0:0:134:4762:-428.686,-40.338,0	0/1:140:61,79:61:2188:79:2817:-211.624,0,-155.037	1/1:88:0,88:0:0:88:3148:-283.546,-26.4906,0	1/1:61:0,61:0:0:61:2169:-195.477,-18.3628,0	1/1:121:0,121:0:0:121:4309:-387.986,-36.4246,0	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	1/1:284:0,284:0:0:284:10147:-913.162,-85.4925,0	0/1:44:21,23:21:752:23:828:-61.5988,0,-54.7609	0/1:7:5,2:5:180:2:63:-3.87594,0,-14.4449	0/1:101:47,54:47:1688:54:1919:-142.576,0,-121.803	1/1:49:0,49:0:0:49:1731:-156.072,-14.7505,0	0/1:7:5,2:5:171:2:72:-4.72951,0,-13.6182	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:65:35,30:35:1244:30:1069:-76.9312,0,-92.6977	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:114:58,56:58:2076:56:2004:-146.316,0,-152.793	0/1:105:49,56:49:1735:56:1982:-147.044,0,-124.823	0/1:66:30,36:30:1080:36:1288:-96.3556,0,-77.6453	0/1:86:23,63:23:828:63:2228:-174.896,0,-48.954	1/1:156:1,155:1:36:155:5518:-493.123,-43.3624,0	0/1:127:93,34:93:3303:34:1216:-71.5158,0,-259.254	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:50:0,50:0:0:50:1788:-161.116,-15.0515,0	0/1:50:20,30:20:712:30:1067:-81.2897,0,-49.3552	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:139:0,139:0:0:139:4980:-448.348,-41.8432,0	1/1:72:0,72:0:0:72:2565:-231.098,-21.6742,0	1/1:82:0,82:0:0:82:2917:-262.764,-24.6845,0	1/1:148:0,148:0:0:148:5308:-477.853,-44.5524,0	0/1:68:26,42:26:936:42:1500:-114.821,0,-64.0757	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/1:83:38,45:38:1360:45:1606:-119.844,0,-97.7151	0/1:93:32,61:32:1148:61:2184:-168.83,0,-75.634	1/1:164:0,164:0:0:164:5838:-525.535,-49.3689,0	0/1:39:20,19:20:720:19:680:-49.789,0,-53.3886	1/1:45:0,45:0:0:45:1608:-145.005,-13.5464,0	1/1:21:0,21:0:0:21:742:-67.1028,-6.32163,0	0/1:67:24,43:24:852:43:1544:-119.084,0,-56.8314	1/1:22:0,22:0:0:22:791:-71.5155,-6.62266,0	0/1:55:26,29:26:923:29:1040:-77.3577,0,-66.8301	0/1:33:10,23:10:360:23:828:-64.9092,0,-22.8103	1/1:32:0,32:0:0:32:1136:-102.548,-9.63296,0	0/1:28:9,19:9:324:19:672:-52.378,0,-21.0688	0/1:17:9,8:9:320:8:284:-20.7858,0,-24.0248	1/1:113:0,113:0:0:113:4040:-363.694,-34.0164,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0
chr05	1666137	.	T	C	21825.2	PASS	AB=0.442783;ABP=90.4791;AC=45;AF=0.241935;AN=186;AO=1368;CIGAR=1X;DP=6780;DPB=6780;DPRA=0.919403;EPP=2930.31;EPPR=11681.3;GTI=3;LEN=1;MEANALT=1.04082;MQM=59.9298;MQMR=59.9584;NS=93;NUMALT=1;ODDS=3.99965;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48823;QR=193477;RO=5410;RPL=1363;RPP=2930.31;RPPR=11681.3;RPR=5;RUN=1;SAF=1368;SAP=2973.58;SAR=0;SRF=5410;SRP=11750.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:39,24:39:1404:24:860:-58.7569,0,-107.694	0/1:46:29,17:29:1035:17:608:-41.2046,0,-79.6157	0/0:136:136,0:136:4864:0:0:0,-40.9401,-437.914	0/0:208:208,0:208:7393:0:0:0,-62.6142,-665.411	0/1:43:23,20:23:824:20:720:-52.1845,0,-61.539	0/1:39:29,10:29:1044:10:360:-21.0041,0,-82.5346	0/1:84:49,35:49:1736:35:1256:-88.0588,0,-131.235	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.666	0/1:95:54,41:54:1929:41:1472:-104.15,0,-145.279	0/0:55:54,1:54:1944:1:36:0,-12.9584,-171.638	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:52:52,0:52:1857:0:0:0,-15.6536,-167.408	0/1:60:29,31:29:1044:31:1107:-81.8784,0,-76.213	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:48:29,19:29:1044:19:665:-45.7233,0,-79.8254	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.454	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0059	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:85:51,34:51:1821:34:1218:-84.3392,0,-138.582	0/1:108:59,49:59:2120:49:1755:-125.722,0,-158.557	0/1:69:32,37:32:1144:37:1328:-99.0512,0,-82.4984	0/1:85:46,39:46:1643:39:1387:-99.5402,0,-122.57	0/0:48:47,1:47:1680:1:36:0,-10.8512,-147.889	0/0:68:68,0:68:2412:0:0:0,-20.47,-217.335	0/0:143:143,0:143:5136:0:0:0,-43.0473,-462.351	0/1:191:106,85:106:3774:85:3015:-213.997,0,-282.36	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:201:123,78:123:4413:78:2804:-192.092,0,-336.832	0/1:113:67,46:67:2400:46:1641:-113.96,0,-182.24	0/1:129:84,45:84:3016:45:1616:-106.897,0,-232.837	0/1:8:7,1:7:237:1:36:-1.19004,0,-19.2508	0/0:25:24,1:24:849:1:36:0,-3.92747,-73.1296	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:107:107,0:107:3825:0:0:0,-32.2102,-344.443	0/0:115:115,0:115:4108:0:0:0,-34.6184,-369.903	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	.:.:.:.:.:.:.:.	0/0:226:223,3:223:7963:3:104:0,-58.33,-706.978	0/1:17:7,10:7:233:10:360:-27.6268,0,-16.1768	0/0:137:137,0:137:4897:0:0:0,-41.2411,-440.881	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:118:58,60:58:2069:60:2142:-157.524,0,-150.957	0/0:137:137,0:137:4877:0:0:0,-41.2411,-439.046	0/1:142:80,62:80:2860:62:2194:-154.977,0,-214.892	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.989	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.191	0/0:121:121,0:121:4322:0:0:0,-36.4246,-389.153	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:286:286,0:286:10245:0:0:0,-86.0946,-921.971	0/1:46:24,22:24:849:22:788:-57.3974,0,-62.8804	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:102:56,46:56:1992:46:1652:-118.263,0,-148.845	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.382	0/1:9:2,7:2:72:7:242:-19.4067,0,-4.12745	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:67:32,34:32:1148:34:1220:-89.879,0,-83.2959	0/0:85:85,0:85:3030:0:0:0,-25.5875,-272.927	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:116:57,59:57:2048:59:2105:-154.793,0,-149.672	0/1:105:55,50:55:1976:50:1775:-128.422,0,-146.504	0/1:68:36,32:36:1292:32:1135:-81.9872,0,-96.1137	0/1:89:65,24:65:2328:24:849:-49.9346,0,-182.988	0/0:156:156,0:156:5588:0:0:0,-46.9607,-502.614	0/1:129:34,95:34:1201:95:3404:-267.739,0,-69.5608	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.196	0/1:55:33,22:33:1184:22:792:-55.049,0,-90.3117	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9361	0/0:141:141,0:141:5034:0:0:0,-42.4452,-453.204	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/0:149:149,0:149:5333:0:0:0,-44.8535,-480.102	0/1:70:42,28:42:1493:28:998:-69.0593,0,-113.582	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/1:84:45,39:45:1612:39:1383:-99.4807,0,-120.084	0/1:96:63,33:63:2264:33:1144:-74.3624,0,-175.123	0/0:164:164,0:164:5881:0:0:0,-49.3689,-529.395	0/1:39:19,20:19:684:20:705:-52.0326,0,-50.1502	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.324	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0315	0/1:68:42,26:42:1504:26:927:-63.2773,0,-115.185	0/0:22:22,0:22:777:0:0:0,-6.62266,-70.2504	0/1:54:28,26:28:1000:26:936:-68.3038,0,-74.0598	0/1:35:24,10:24:849:10:360:-22.2857,0,-66.2771	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:28:19,9:19:684:9:320:-20.7053,0,-53.4615	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/0:111:111,0:111:3965:0:0:0,-33.4143,-356.954	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592
chr05	1694890	.	A	G	30451.1	PASS	AB=0.583809;ABP=184.636;AC=50;AF=0.268817;AN=186;AO=1756;CIGAR=1X;DP=5896;DPB=5896;DPRA=1.24826;EPP=3807.43;EPPR=8982.05;GTI=1;LEN=1;MEANALT=1.01852;MQM=59.9932;MQMR=59.999;NS=93;NUMALT=1;ODDS=0.924811;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62304;QR=147518;RO=4139;RPL=0;RPP=3816.12;RPPR=8982.05;RPR=1756;RUN=1;SAF=1;SAP=3807.43;SAR=1755;SRF=0;SRP=8990.73;SRR=4139;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:22,23:22:783:23:819:-60.4852,0,-57.2466	0/1:86:39,46:39:1404:46:1652:-123.021,0,-100.712	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:99:98,1:98:3494:1:36:0,-26.2037,-311.072	0/1:34:11,23:11:396:23:811:-63.0749,0,-25.7477	0/1:32:7,25:7:248:25:896:-71.3274,0,-13.0312	0/1:87:41,46:41:1458:46:1627:-120.524,0,-105.325	0/0:112:111,1:111:3957:1:36:0,-30.1171,-352.723	0/1:84:46,38:46:1631:38:1305:-92.4555,0,-121.792	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:30:30,0:30:1054:0:0:0,-9.0309,-95.1692	0/0:81:81,0:81:2837:0:0:0,-24.3834,-255.565	0/1:46:25,21:25:892:21:741:-53.1642,0,-66.7523	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/1:57:27,30:27:963:30:1063:-78.8221,0,-69.8272	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.763	0/0:33:33,0:33:1161:0:0:0,-9.93399,-104.795	0/1:88:33,55:33:1180:55:1944:-148.743,0,-80.0174	0/1:106:40,66:40:1419:66:2341:-179.039,0,-96.0975	0/1:95:24,71:24:849:71:2507:-197.283,0,-48.13	0/1:80:42,38:42:1497:38:1321:-95.1024,0,-110.94	0/1:83:68,15:68:2421:15:540:-23.951,0,-193.159	0/0:46:46,0:46:1633:0:0:0,-13.8474,-147.257	0/0:168:168,0:168:5992:0:0:0,-50.573,-539.386	0/1:179:66,113:66:2368:113:4005:-306.754,0,-159.494	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/1:163:65,98:65:2322:98:3480:-264.343,0,-160.171	0/1:118:49,69:49:1756:69:2468:-186.853,0,-122.802	0/1:79:34,45:34:1212:45:1612:-121.589,0,-85.605	0/1:12:2,10:2:72:10:351:-28.3143,0,-3.22436	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:171:170,1:170:6075:1:36:0,-47.8779,-543.252	0/0:111:111,0:111:3949:0:0:0,-33.4143,-355.602	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:63:62,1:62:2195:1:36:0,-15.3666,-194.214	0/1:21:11,10:11:381:10:360:-26.4227,0,-28.299	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/1:56:20,36:20:716:36:1288:-99.3659,0,-47.91	0/1:87:37,50:37:1328:50:1757:-132.22,0,-93.6326	0/0:67:66,1:66:2372:1:36:0,-16.5707,-210.139	0/1:120:50,70:50:1772:70:2479:-187.238,0,-123.637	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/0:102:102,0:102:3617:0:0:0,-30.7051,-325.734	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:16:3,13:3:104:13:464:-37.281,0,-4.88633	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:46:14,32:14:500:32:1135:-88.6107,0,-31.4888	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:49:18,31:18:635:31:1101:-84.6488,0,-42.7265	0/0:92:91,1:91:3224:1:32:0,-24.4954,-287.183	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:119:43,76:43:1531:76:2728:-209.94,0,-102.26	0/1:137:57,80:57:2026:80:2847:-215.227,0,-141.368	0/1:34:10,24:10:360:24:851:-66.6744,0,-22.5093	0/1:38:11,27:11:396:27:953:-74.6433,0,-24.5436	0/0:83:82,1:82:2944:1:36:0,-21.3872,-261.595	0/1:69:15,54:15:536:54:1914:-151.766,0,-27.8037	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:75:39,36:39:1387:36:1271:-92.1148,0,-102.551	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:66:66,0:66:2333:0:0:0,-19.868,-210.229	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:130:130,0:130:4643:0:0:0,-39.1339,-418.033	0/0:79:79,0:79:2823:0:0:0,-23.7814,-254.309	0/1:64:27,37:27:972:37:1316:-99.4759,0,-68.532	0/0:61:60,1:60:2148:1:32:0,-15.1635,-190.388	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/1:48:9,39:9:324:39:1391:-111.039,0,-15.0564	0/1:66:27,39:27:957:39:1387:-105.26,0,-66.5759	0/0:110:110,0:110:3922:0:0:0,-33.1133,-353.173	0/1:85:39,46:39:1373:46:1643:-122.57,0,-98.279	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/0:89:89,0:89:3161:0:0:0,-26.7917,-284.715	0/1:111:52,59:52:1842:59:2090:-154.955,0,-132.645	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/1:65:20,45:20:707:45:1590:-123.821,0,-44.3876	0/1:59:32,27:32:1148:27:955:-68.5041,0,-85.8691	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:74:35,39:35:1234:39:1377:-101.95,0,-89.0864	0/1:48:22,26:22:783:26:936:-70.11,0,-56.3435	0/0:51:51,0:51:1827:0:0:0,-15.3525,-164.71	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67
chr05	1703637	.	TCAAGTA	ACAAGTG,ACAAGTA	159357	PASS	AB=0.509655,0.48273;ABP=5.98729,12.5354;AC=142,46;AF=0.755319,0.244681;AN=188;AO=5661,1795;CIGAR=1X5M1X,1X6M;DP=7521;DPB=7521.29;DPRA=0,1.01613;EPP=12295.7,3900.8;EPPR=5.18177;GTI=1;LEN=7,1;MEANALT=2.25532,2.57377;MQM=59.9,59.6429;MQMR=60;NS=94;NUMALT=2;ODDS=0.569076;PAIRED=0,0;PAIREDR=0;PAO=0.5,0;PQA=18,0;PQR=0;PRO=0;QA=201244,64008;QR=31;RO=1;RPL=0,0;RPP=12295.7,3900.8;RPPR=5.18177;RPR=5661,1795;RUN=1,1;SAF=0,0;SAP=12295.7,3900.8;SAR=5661,1795;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:74:0,40,34:0:0:40,34:1420,1215:-215.113,-99.4207,-87.3795,-116.048,0,-105.813	1/2:54:0,23,31:0:0:23,31:799,1116:-156.371,-91.4198,-84.4961,-65.3039,0,-55.9719	1/1:137:0,135,0:0:0:135,0:4768,0:-429.005,-40.6391,0,-429.005,-40.6391,-429.005	1/1:121:0,121,0:0:0:121,0:4310,0:-387.827,-36.4246,0,-387.827,-36.4246,-387.827	1/2:52:0,18,31:0:0:18,31:640,1112:-142.854,-90.6997,-85.2812,-52.1516,0,-42.8197	1/2:32:0,16,16:0:0:16,16:572,572:-93.6366,-46.9969,-42.1805,-46.9969,0,-42.1805	1/2:74:0,29,45:0:0:29,45:1017,1597:-213.229,-130.471,-121.741,-83.1099,0,-69.5636	1/1:123:0,122,0:0:0:122,0:4354,0:-391.675,-36.7257,0,-391.675,-36.7257,-391.675	1/2:93:0,51,40:0:0:51,40:1811,1431:-264.287,-116.724,-101.371,-147.597,0,-135.556	1/1:67:0,66,1:0:0:66,1:2355,36:-211.849,-19.868,0,-208.911,-16.5707,-208.61	1/1:52:0,50,0:0:0:50,0:1781,0:-160.28,-15.0515,0,-160.28,-15.0515,-160.28	1/1:98:0,96,1:0:0:96,1:3434,32:-308.971,-28.8989,0,-306.664,-26.5657,-306.363	1/2:87:0,55,31:0:0:55,31:1976,1108:-251.434,-90.3396,-73.7829,-161.092,0,-151.76	1/1:61:0,55,2:0:0:55,2:1964,53:-176.714,-16.5567,0,-173.091,-12.9674,-172.489	1/2:57:0,30,27:0:0:30,27:1072,959:-165.903,-78.4976,-69.4667,-87.7616,0,-79.6337	1/1:54:0,53,1:0:0:53,1:1896,29:-170.656,-15.9546,0,-168.62,-13.6564,-168.319	1/1:25:0,24,0:0:0:24,0:849,0:-76.3682,-7.22472,0,-76.3682,-7.22472,-76.3682	1/1:36:0,35,1:0:0:35,1:1241,32:-111.697,-10.5361,0,-109.391,-7.93797,-109.09	1/1:33:0,33,0:0:0:33,0:1157,0:-104.434,-9.93399,0,-104.434,-9.93399,-104.434	1/2:118:0,72,46:0:0:72,46:2541,1652:-342.026,-135.121,-113.447,-207.262,0,-193.415	1/2:145:0,75,69:0:0:75,69:2658,2476:-418.422,-201.963,-179.385,-216.456,0,-195.685	1/2:101:0,35,64:0:0:35,64:1252,2280:-287.927,-185.835,-175.299,-102.089,0,-82.8234	1/2:109:0,61,47:0:0:61,47:2158,1688:-313.612,-137.846,-119.483,-175.909,0,-161.76	1/2:29:0,23,6:0:0:23,6:828,216:-85.5449,-17.9843,-11.0606,-67.9204,0,-66.1142	1/1:104:0,101,0:0:0:101,0:3604,0:-324.238,-30.404,0,-324.238,-30.404,-324.238	1/1:187:0,184,1:0:0:184,1:6579,36:-591.783,-55.3895,0,-588.846,-52.4405,-588.545	1/2:207:0,114,93:0:0:114,93:4055,3348:-603.956,-273.54,-239.222,-330.774,0,-302.778	1/1:31:0,31,0:0:0:31,0:1104,0:-99.6706,-9.33193,0,-99.6706,-9.33193,-99.6706	1/2:249:0,107,141:0:0:107,141:3821,5037:-722.157,-410.639,-378.428,-311.565,0,-269.12	1/2:109:1,37,71:1:31:37,71:1320,2539:-311.887,-204.584,-195.934,-105.162,0,-86.2762	1/2:78:0,37,41:0:0:37,41:1289,1468:-224.892,-120.074,-108.936,-105.171,0,-92.8285	1/2:6:0,2,4:0:0:2,4:72,144:-17.9843,-12.1095,-11.5074,-6.23466,0,-5.03054	1/1:29:0,29,0:0:0:29,0:1021,0:-92.1969,-8.72987,0,-92.1969,-8.72987,-92.1969	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/2:6:0,1,5:0:0:1,5:36,176:-17.6186,-14.6799,-14.3788,-3.29724,0,-1.79209	1/1:192:0,192,0:0:0:192,0:6852,0:-616.741,-57.7978,0,-616.741,-57.7978,-616.741	1/1:202:0,200,1:0:0:200,1:7082,36:-636.987,-60.206,0,-634.049,-57.2684,-633.748	1/1:50:0,48,1:0:0:48,1:1708,32:-153.674,-14.4494,0,-151.367,-12.1762,-151.066	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:58:0,56,2:0:0:56,2:2004,72:-180.204,-16.8577,0,-174.329,-10.623,-173.727	1/2:21:0,13,8:0:0:13,8:431,288:-58.7032,-23.8592,-19.9458,-35.193,0,-32.7847	1/1:151:0,150,0:0:0:150,0:5324,0:-478.832,-45.1545,0,-478.832,-45.1545,-478.832	1/1:47:0,44,2:0:0:44,2:1572,54:-141.52,-13.2453,0,-137.808,-9.53375,-137.206	1/2:46:0,31,15:0:0:31,15:1074,540:-131.682,-44.4211,-35.0892,-87.616,0,-83.1006	1/2:121:0,76,45:0:0:76,45:2702,1616:-352.372,-132.184,-109.305,-220.546,0,-206.999	1/1:98:0,97,0:0:0:97,0:3456,0:-311,-29.1999,0,-311,-29.1999,-311	1/2:161:0,80,80:0:0:80,80:2838,2849:-463.575,-232.353,-208.271,-231.365,0,-207.282	1/1:105:0,105,0:0:0:105,0:3760,0:-338.6,-31.6082,0,-338.6,-31.6082,-338.6	1/1:87:0,86,0:0:0:86,0:3043,0:-273.809,-25.8886,0,-273.809,-25.8886,-273.809	1/1:100:0,97,0:0:0:97,0:3457,0:-310.997,-29.1999,0,-310.997,-29.1999,-310.997	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:134:0,134,0:0:0:134,0:4788,0:-431.062,-40.338,0,-431.062,-40.338,-431.062	1/2:36:0,18,18:0:0:18,18:648,644:-105.747,-52.8721,-47.4535,-53.2333,0,-47.8148	1/2:10:0,2,8:0:0:2,8:72,288:-29.734,-23.8592,-23.2571,-6.23466,0,-3.82642	1/2:126:0,71,54:0:0:71,54:2548,1940:-366.098,-158.261,-136.888,-207.836,0,-191.58	1/1:53:0,51,1:0:0:51,1:1836,29:-165.209,-15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chr05	1703810	.	G	A	21009.6	PASS	AB=0.454078;ABP=56.4592;AC=43;AF=0.231183;AN=186;AO=1334;CIGAR=1X;DP=6618;DPB=6618;DPRA=0.890004;EPP=2899.75;EPPR=11474.9;GTI=2;LEN=1;MEANALT=1.02083;MQM=59.0975;MQMR=59.7479;NS=93;NUMALT=1;ODDS=1.61158;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47347;QR=188037;RO=5283;RPL=1334;RPP=2899.75;RPPR=11474.9;RPR=0;RUN=1;SAF=0;SAP=2899.75;SAR=1334;SRF=0;SRP=11474.9;SRR=5283;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:27,7:27:956:7:248:-12.4166,0,-76.0743	0/1:40:25,15:25:900:15:521:-35.1686,0,-69.2798	0/0:186:186,0:186:6638:0:0:0,-55.9916,-597.491	0/0:162:162,0:162:5776:0:0:0,-48.7669,-519.836	0/1:10:1,9:1:36:9:324:-26.4951,0,-0.587975	0/0:12:11,1:11:388:1:36:0,-0.0145305,-31.6595	0/1:65:43,22:43:1532:22:784:-51.2984,0,-118.606	0/0:112:112,0:112:4016:0:0:0,-33.7154,-360.99	0/1:77:58,19:58:2042:19:680:-38.2966,0,-160.709	0/0:80:80,0:80:2856:0:0:0,-24.0824,-256.771	0/0:39:39,0:39:1363:0:0:0,-11.7402,-122.949	0/0:94:94,0:94:3347:0:0:0,-28.2968,-301.316	0/1:62:25,37:25:892:37:1316:-99.9954,0,-61.9343	0/0:47:47,0:47:1650:0:0:0,-14.1484,-148.357	0/1:54:24,30:24:842:30:1076:-80.895,0,-59.8414	0/0:60:60,0:60:2127:0:0:0,-18.0618,-191.65	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.264	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3065	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:87:44,43:44:1572:43:1536:-112.329,0,-115.582	0/1:136:78,58:78:2780:58:2051:-143.861,0,-209.483	0/1:38:22,16:22:777:16:572:-40.3743,0,-58.8112	0/1:72:44,28:44:1576:28:966:-65.5278,0,-120.457	0/1:47:42,5:42:1508:5:180:-2.40366,0,-121.866	0/0:37:37,0:37:1295:0:0:0,-11.1381,-115.989	0/0:192:192,0:192:6864:0:0:0,-57.7978,-617.829	0/1:187:120,67:120:4287:67:2381:-157.537,0,-329.714	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/1:205:113,91:113:3998:91:3208:-227.233,0,-297.784	0/1:68:30,38:30:1080:38:1356:-101.813,0,-77.0432	0/1:68:39,29:39:1388:29:1036:-73.0663,0,-104.747	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1636	.:.:.:.:.:.:.:.	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/1:18:3,15:3:108:15:540:-43.5108,0,-4.65663	0/0:177:177,0:177:6294:0:0:0,-53.2823,-566.554	0/0:107:107,0:107:3804:0:0:0,-32.2102,-342.559	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.86	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:54:52,2:52:1848:2:72:0,-9.4189,-159.728	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/0:56:56,0:56:1984:0:0:0,-16.8577,-178.832	0/0:58:58,0:58:2064:0:0:0,-17.4597,-185.967	0/1:52:30,22:30:1076:22:788:-55.5702,0,-81.4817	0/1:81:47,34:47:1680:34:1200:-83.9115,0,-127.067	0/0:89:89,0:89:3170:0:0:0,-26.7917,-285.449	0/1:89:52,37:52:1864:37:1303:-90.7331,0,-141.248	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.616	0/0:135:135,0:135:4820:0:0:0,-40.639,-433.798	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:104:104,0:104:3704:0:0:0,-31.3071,-333.454	0/1:68:48,20:48:1703:20:716:-44.2955,0,-133.066	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:143:81,62:81:2896:62:2193:-154.54,0,-217.771	0/0:49:45,4:45:1608:4:144:0,-1.43685,-130.804	0/1:8:3,5:3:108:5:172:-13.4097,0,-7.66693	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.69838	0/1:74:44,30:44:1567:30:1072:-74.4621,0,-119.045	0/0:60:59,1:59:2089:1:36:0,-14.4635,-184.676	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:200:94,106:94:3342:106:3756:-277.964,0,-240.781	0/1:114:60,54:60:2124:54:1912:-137.942,0,-157.112	0/1:53:21,32:21:743:32:1144:-87.2312,0,-51.2387	0/1:57:21,36:21:752:36:1260:-96.3981,0,-50.7913	0/0:130:129,1:129:4590:1:36:0,-35.5356,-409.635	0/1:113:42,71:42:1504:71:2509:-191.825,0,-101.638	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.422	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.466	0/1:30:14,16:14:500:16:572:-42.676,0,-36.3053	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2052	0/0:111:111,0:111:3956:0:0:0,-33.4143,-355.795	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.592	0/0:114:114,0:114:4049:0:0:0,-34.3174,-364.491	0/0:141:141,0:141:5006:0:0:0,-42.4452,-450.689	0/1:19:9,10:9:324:10:360:-27.0195,0,-23.7863	0/0:130:130,0:130:4569:0:0:0,-39.1339,-411.172	0/1:11:9,2:9:311:2:72:-3.52455,0,-25.0124	0/1:69:40,29:40:1432:29:1032:-72.3789,0,-108.264	0/1:63:38,25:38:1331:25:877:-60.2626,0,-101.079	0/0:231:231,0:231:8256:0:0:0,-69.5379,-742.129	0/1:29:11,18:11:392:18:648:-49.9039,0,-26.8868	0/0:76:76,0:76:2714:0:0:0,-22.8783,-244.503	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:85:46,39:46:1626:39:1400:-100.675,0,-121.04	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1746	0/1:44:16,28:16:572:28:990:-76.1255,0,-38.5677	0/1:70:36,34:36:1275:34:1216:-88.6518,0,-93.9798	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0764	0/1:81:49,32:49:1731:32:1136:-77.9939,0,-131.691	0/1:62:25,37:25:883:37:1316:-100.059,0,-61.1236	0/0:144:144,0:144:5111:0:0:0,-43.3483,-460.089	0/0:81:81,0:81:2880:0:0:0,-24.3834,-259.438
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chr05	1711879	.	CACG	CACA	102285	PASS	AB=0.451674;ABP=67.2327;AC=140;AF=0.76087;AN=184;AO=4854;CIGAR=3M1X;DP=6626;DPB=6626;DPRA=12.1245;EPP=10543.3;EPPR=3777.07;GTI=2;LEN=1;MEANALT=1.21978;MQM=59.9911;MQMR=60;NS=92;NUMALT=1;ODDS=1.19852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173939;QR=61573;RO=1750;RPL=4854;RPP=10543.3;RPPR=3785.74;RPR=0;RUN=1;SAF=0;SAP=10543.3;SAR=4854;SRF=1;SRP=3794.41;SRR=1749;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:10,10:10:358:10:360:-26.7237,0,-26.5423	0/1:82:48,34:48:1708:34:1220:-85.4223,0,-129.321	1/1:80:0,80:0:0:80:2847:-256.468,-24.0824,0	1/1:226:0,226:0:0:226:8104:-729.375,-68.0328,0	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:27:7,20:7:250:20:716:-56.6399,0,-14.7189	0/1:72:43,29:43:1506:29:1032:-71.5193,0,-114.157	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:57:35,22:35:1241:22:784:-53.7252,0,-94.8354	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:113:1,112:1:36:112:4005:-357.031,-30.4181,0	0/1:61:32,29:32:1131:29:1040:-75.5515,0,-83.7355	1/1:44:0,44:0:0:44:1575:-142.041,-13.2453,0	0/1:67:27,39:27:968:39:1400:-106.071,0,-67.2099	1/1:37:0,36:0:0:36:1292:-116.282,-10.8371,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:140:77,63:77:2725:63:2248:-160.439,0,-203.349	0/1:128:54,73:54:1919:73:2620:-197.457,0,-134.396	0/1:45:34,11:34:1216:11:396:-22.4364,0,-96.2001	0/1:101:45,56:45:1594:56:2008:-150.589,0,-113.346	1/1:36:3,33:3:95:33:1180:-97.6444,-1.9734,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:230:1,227:1:36:227:8156:-730.485,-65.3798,0	0/1:132:68,64:68:2367:64:2296:-167.165,0,-173.551	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:199:105,93:105:3717:93:3348:-241.572,0,-274.771	0/1:178:95,83:95:3347:83:2951:-212.242,0,-247.867	0/1:80:35,45:35:1240:45:1620:-122.008,0,-87.8219	0/1:9:3,6:3:107:6:216:-17.0812,0,-7.2729	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:5:3,2:3:106:2:72:-5.33157,0,-8.38395	1/1:169:1,168:1:36:168:6020:-538.277,-47.2758,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:49:0,49:0:0:49:1745:-157.333,-14.7505,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:242:6,236:6:210:236:8466:-742.697,-53.6076,0	0/1:33:14,19:14:503:19:671:-50.7818,0,-35.6737	1/1:58:0,57:0:0:57:2048:-184.261,-17.1587,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:41:20,21:20:673:21:756:-56.025,0,-48.5405	0/1:62:35,27:35:1227:27:972:-69.134,0,-92.068	1/1:67:0,67:0:0:67:2395:-215.806,-20.169,0	0/1:119:64,55:64:2277:55:1959:-140.762,0,-169.37	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:116:0,115:0:0:115:4119:-370.614,-34.6185,0	1/1:108:0,108:0:0:108:3844:-346.138,-32.5112,0	.:.:.:.:.:.:.:.	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	0/1:103:50,53:50:1730:53:1900:-140.272,0,-124.975	0/0:6:6,0:6:215:0:0:0,-1.80618,-19.6992	0/1:131:85,46:85:2993:46:1636:-108.094,0,-230.17	1/1:31:0,30:0:0:30:1076:-96.8703,-9.0309,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:58:28,29:28:985:29:1036:-76.0321,0,-71.4451	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	.:.:.:.:.:.:.:.	0/1:136:99,36:99:3434:36:1284:-74.864,0,-268.276	0/1:112:66,45:66:2297:45:1620:-112.423,0,-173.325	0/1:60:44,16:44:1547:16:572:-33.7516,0,-121.459	0/1:53:30,23:30:1061:23:813:-57.5345,0,-79.8463	1/1:122:1,120:1:36:120:4299:-383.532,-33.1413,0	0/1:127:86,40:86:3026:40:1436:-91.2481,0,-234.284	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:51:0,48:0:0:48:1724:-155.123,-14.4494,0	0/1:37:16,21:16:569:21:756:-57.2291,0,-40.4038	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:93:0,93:0:0:93:3325:-299.466,-27.9958,0	1/1:71:0,71:0:0:71:2546:-229.391,-21.3731,0	1/1:108:1,107:1:36:107:3840:-342.197,-28.913,0	1/1:182:0,181:0:0:181:6495:-584.272,-54.4864,0	0/1:19:10,9:10:354:9:324:-23.7863,0,-26.4799	1/1:125:1,124:1:35:124:4456:-397.71,-34.1301,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:111:51,60:51:1799:60:2137:-159.182,0,-128.777	0/1:104:57,47:57:1973:47:1692:-121.26,0,-146.535	1/1:130:1,128:1:36:128:4581:-408.855,-35.5944,0	0/1:40:28,12:28:999:12:432:-27.18,0,-78.1838	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	1/1:44:0,44:0:0:44:1566:-141.23,-13.2453,0	0/1:113:47,66:47:1647:66:2363:-178.911,0,-114.5	1/1:19:0,19:0:0:19:669:-60.5339,-5.71957,0	0/1:66:39,27:39:1366:27:972:-67.9299,0,-103.37	0/1:73:43,29:43:1505:29:1044:-72.2408,0,-113.708	1/1:21:0,20:0:0:20:720:-64.8546,-6.0206,0	0/1:73:43,30:43:1516:30:1076:-75.1777,0,-114.757	0/1:70:40,30:40:1393:30:1064:-74.9996,0,-104.593	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:83:0,82:0:0:82:2944:-264.893,-24.6845,0
chr05	1729412	.	C	T	156213	PASS	AB=0.488992;ABP=7.79117;AC=140;AF=0.752688;AN=186;AO=7353;CIGAR=1X;DP=9692;DPB=9692;DPRA=52.663;EPP=15926.4;EPPR=5066.89;GTI=1;LEN=1;MEANALT=1.03261;MQM=59.9863;MQMR=59.9974;NS=93;NUMALT=1;ODDS=4.32205;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263086;QR=83119;RO=2336;RPL=7348;RPP=15926.4;RPPR=5066.89;RPR=5;RUN=1;SAF=7353;SAP=15969.8;SAR=0;SRF=2336;SRP=5075.57;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:5,11:5:171:11:396:-31.1663,0,-10.909	0/1:104:47,57:47:1684:57:2043:-152.834,0,-120.54	1/1:107:1,106:1:36:106:3783:-337.071,-28.6119,0	1/1:237:1,236:1:36:236:8442:-756.182,-67.7458,0	0/1:75:34,41:34:1208:41:1476:-110.559,0,-86.4488	0/1:43:15,28:15:540:28:1004:-77.7316,0,-35.9922	0/1:160:83,77:83:2972:77:2738:-198.426,0,-219.548	1/1:161:3,158:3:108:158:5646:-498.182,-38.3907,0	0/1:78:36,42:36:1279:42:1504:-112.174,0,-91.9321	1/1:90:0,90:0:0:90:3234:-291.281,-27.0927,0	1/1:56:0,56:0:0:56:1992:-179.551,-16.8577,0	1/1:74:0,74:0:0:74:2623:-236.315,-22.2762,0	0/1:53:31,22:31:1103:22:771:-53.7552,0,-83.6252	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:78:42,36:42:1468:36:1292:-93.1034,0,-108.931	1/1:51:1,50:1:36:50:1782:-157.063,-11.7543,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:287:140,147:140:4992:147:5269:-387.948,0,-363.035	0/1:163:79,84:79:2780:84:2992:-220.442,0,-201.373	0/1:163:105,58:105:3743:58:2088:-139.122,0,-288.003	0/1:33:8,25:8:288:25:885:-70.0325,0,-16.3334	1/1:61:4,57:4:144:57:2036:-170.199,-5.04921,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:376:0,376:0:0:376:13458:-1211.01,-113.187,0	0/1:206:82,124:82:2940:124:4441:-337.848,0,-202.817	1/1:50:1,49:1:36:49:1764:-155.445,-11.4532,0	0/1:272:133,139:133:4731:139:4977:-366.196,0,-344.071	0/1:137:54,83:54:1932:83:2944:-223.955,0,-132.915	0/1:106:51,55:51:1818:55:1972:-145.832,0,-131.991	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:13:6,7:6:212:7:248:-18.7508,0,-15.5114	1/1:222:0,222:0:0:222:7958:-716.239,-66.8287,0	1/1:208:1,207:1:36:207:7399:-662.357,-59.016,0	1/1:99:0,99:0:0:99:3520:-317.009,-29.802,0	.:.:.:.:.:.:.:.	1/1:185:2,183:2:72:183:6535:-581.237,-48.8538,0	0/1:54:32,22:32:1148:22:764:-52.8173,0,-87.3742	1/1:92:0,92:0:0:92:3308:-297.937,-27.6948,0	1/1:83:0,83:0:0:83:2968:-267.353,-24.9855,0	0/1:69:38,31:38:1360:31:1116:-79.9806,0,-101.93	0/1:77:38,39:38:1360:39:1400:-103.12,0,-99.5213	1/1:148:0,148:0:0:148:5307:-477.763,-44.5524,0	0/1:185:88,97:88:3113:97:3479:-257.629,0,-224.707	1/1:132:0,132:0:0:132:4721:-425.048,-39.736,0	1/1:112:0,112:0:0:112:3999:-360.1,-33.7154,0	1/1:200:0,200:0:0:200:7166:-644.994,-60.206,0	0/1:13:7,6:7:248:6:197:-14.1379,0,-18.7508	1/1:164:0,164:0:0:164:5871:-528.498,-49.3689,0	0/1:43:26,17:26:932:17:608:-42.1077,0,-71.2546	0/1:19:10,9:10:348:9:324:-23.7863,0,-25.9356	0/1:119:57,62:57:2018:62:2213:-163.611,0,-146.069	1/1:24:0,24:0:0:24:855:-77.2702,-7.22472,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:66:44,22:44:1549:22:788:-51.3768,0,-119.832	1/1:140:0,140:0:0:140:5032:-453.024,-42.1442,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:269:132,137:132:4695:137:4892:-359.455,0,-341.736	0/1:170:83,87:83:2959:87:3122:-230.031,0,-215.368	0/1:60:27,33:27:960:33:1173:-87.8138,0,-68.6545	0/1:84:31,53:31:1093:53:1899:-145.901,0,-73.3911	1/1:189:0,188:0:0:188:6706:-603.405,-56.5936,0	0/1:263:204,59:204:7271:59:2116:-111.538,0,-575.275	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:76:0,76:0:0:76:2736:-246.482,-22.8783,0	0/1:77:40,37:40:1431:37:1317:-95.6514,0,-105.908	1/1:12:0,12:0:0:12:408:-37.0441,-3.61236,0	1/1:113:0,113:0:0:113:4064:-365.945,-34.0164,0	1/1:80:0,80:0:0:80:2862:-257.815,-24.0824,0	1/1:154:0,154:0:0:154:5498:-494.946,-46.3586,0	1/1:214:0,214:0:0:214:7680:-691.231,-64.4204,0	0/1:97:44,52:44:1559:52:1859:-138.37,0,-111.381	1/1:110:0,110:0:0:110:3937:-354.521,-33.1133,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:114:60,54:60:2111:54:1944:-140.919,0,-155.939	0/1:107:46,61:46:1640:61:2179:-164.165,0,-115.678	1/1:214:0,214:0:0:214:7652:-688.714,-64.4204,0	0/1:132:75,57:75:2652:57:2044:-144.495,0,-199.19	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	0/1:153:79,74:79:2821:74:2655:-193.137,0,-208.07	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0	0/1:88:42,46:42:1495:46:1634:-120.857,0,-108.353	0/1:84:54,30:54:1917:30:1080:-72.2267,0,-147.519	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:91:43,48:43:1530:48:1711:-126.881,0,-110.598	0/1:96:56,40:56:2008:40:1424:-99.5572,0,-152.094	1/1:156:0,155:0:0:155:5567:-500.911,-46.6597,0	1/1:123:0,123:0:0:123:4372:-393.653,-37.0267,0
chr05	1729514	.	AGTTA	CGTTA	40584.2	PASS	AB=0.49286;ABP=5.18089;AC=44;AF=0.234043;AN=188;AO=2430;CIGAR=1X4M;DP=10927;DPB=10927.4;DPRA=1.1632;EPP=5279.69;EPPR=18338.9;GTI=2;LEN=1;MEANALT=1.55769;MQM=59.9975;MQMR=59.9999;NS=94;NUMALT=1;ODDS=0.31189;PAIRED=0;PAIREDR=0;PAO=1.5;PQA=49.5;PQR=0;PRO=0;QA=86808;QR=299965;RO=8444;RPL=2430;RPP=5279.69;RPPR=18338.9;RPR=0;RUN=1;SAF=0;SAP=5279.69;SAR=2430;SRF=0;SRP=18338.9;SRR=8444;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:17,29:17:590:29:1030:-78.8445,0,-39.2557	0/1:114:51,63:51:1806:63:2252:-168.626,0,-128.503	0/0:240:240,0:240:8517:0:0:0,-72.2472,-766.54	0/0:305:304,0:304:10744:0:0:0,-91.5131,-966.521	0/1:59:31,27:31:1098:27:964:-69.276,0,-81.3303	0/1:50:15,35:15:539:35:1260:-98.654,0,-33.7947	0/1:136:77,58:77:2740:58:2072:-145.752,0,-205.845	0/0:194:193,0:193:6830:0:0:0,-58.0988,-614.421	0/1:107:59,48:59:2109:48:1724:-123.235,0,-157.869	0/0:118:116,2:116:4108:2:72:0,-28.6848,-363.071	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.664	0/0:96:95,0:95:3393:0:0:0,-28.5978,-305.336	0/1:74:35,39:35:1248:39:1400:-104.023,0,-90.3488	0/0:111:111,0:111:3960:0:0:0,-33.4143,-356.592	0/1:81:46,35:46:1647:35:1244:-87.8812,0,-124.136	0/0:68:68,0:68:2439:0:0:0,-20.47,-219.765	0/0:140:139,0:139:4931:0:0:0,-41.8432,-443.624	0/0:57:57,0:57:2042:0:0:0,-17.1587,-184.052	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.661	0/1:209:105,102:105:3743:102:3644:-265.522,0,-274.429	0/1:159:75,83:75:2677:83:2980:-220.509,0,-193.253	0/1:101:36,65:36:1285:65:2316:-178.297,0,-85.5498	0/1:78:37,40:37:1317:40:1440:-106.398,0,-95.3322	0/0:108:104,3:104:3720:3:104:0,-22.8639,-325.296	0/0:64:64,0:64:2278:0:0:0,-19.2659,-205.283	0/0:337:334,3:334:11860:3:108:0,-91.3719,-1057.19	0/1:229:124,100:124:4412:100:3580:-254.617,0,-329.463	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.138	0/1:383:196,183:196:6938:183:6537:-473.968,0,-510.049	0/1:166:73,93:73:2573:93:3309:-248.057,0,-181.849	0/1:103:52,51:52:1858:51:1836:-134.456,0,-136.435	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3241	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1229	0/1:3:2,1:2:71:1:36:-2.69518,0,-5.83897	0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4604	0/1:9:1,5:1:36:5:180:-14.3944,0,-1.43559	0/0:251:251,0:251:8874:0:0:0,-75.5585,-798.657	0/0:191:191,0:191:6767:0:0:0,-57.4967,-609.112	0/0:98:97,0:97:3456:0:0:0,-29.1999,-310.894	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:244:243,0:243:8612:0:0:0,-73.1503,-774.875	0/1:52:30,21:30:1077:21:737:-50.9387,0,-81.5307	0/0:151:150,0:150:5337:0:0:0,-45.1545,-480.256	0/0:121:121,0:121:4312:0:0:0,-36.4246,-388.258	0/1:108:52,55:52:1850:55:1967:-144.734,0,-134.21	0/1:82:45,36:45:1585:36:1292:-91.9377,0,-118.293	0/0:118:118,0:118:4176:0:0:0,-35.5215,-376.026	0/1:164:82,81:82:2901:81:2904:-212.168,0,-211.898	0/0:173:173,0:173:6132:0:0:0,-52.0782,-551.987	0/0:148:148,0:148:5272:0:0:0,-44.5524,-474.619	0/0:177:177,0:177:6309:0:0:0,-53.2823,-567.907	0/1:6:5,1:5:179:1:36:-1.79209,0,-14.6542	0/0:128:127,0:127:4536:0:0:0,-38.2308,-408.05	0/1:47:25,22:25:892:22:788:-57.0964,0,-66.4516	0/1:16:7,9:7:247:9:309:-23.3242,0,-17.7568	0/1:160:85,74:85:3000:74:2644:-189.983,0,-222.009	0/0:49:49,0:49:1728:0:0:0,-14.7505,-155.804	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:9:9,0:9:323:0:0:0,-2.70927,-29.4151	0/1:161:108,52:108:3842:52:1864:-119.515,0,-297.454	0/0:164:164,0:164:5825:0:0:0,-49.3689,-524.368	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:192:107,85:107:3794:85:3052:-217.111,0,-283.864	0/1:160:97,62:97:3447:62:2200:-150.138,0,-262.319	0/1:99:47,52:47:1654:52:1841:-136.166,0,-119.346	0/1:108:59,49:59:2083:49:1741:-124.461,0,-155.228	0/0:162:161,1:161:5714:1:36:0,-45.1686,-510.785	0/1:141:56,85:56:1994:85:3056:-232.823,0,-137.288	0/0:59:59,0:59:2070:0:0:0,-17.7608,-186.57	0/0:78:78,0:78:2790:0:0:0,-23.4803,-251.341	0/1:110:67,41:67:2396:41:1476:-100.236,0,-182.998	0/0:20:20,0:20:710:0:0:0,-6.0206,-64.226	0/0:149:148,1:148:5243:1:36:0,-41.2552,-468.415	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.94	0/0:180:179,0:179:6355:0:0:0,-53.8844,-571.689	0/0:251:250,1:250:8926:1:36:0,-71.9603,-799.727	0/1:155:63,92:63:2224:92:3258:-246.78,0,-153.764	0/0:140:139,0:139:4933:0:0:0,-41.8432,-443.915	0/1:15:11,4:11:394:4:140:-8.42913,0,-31.2861	0/1:116:63,50:63:2257:50:1800:-127.906,0,-169.017	0/1:127:68,59:68:2395:59:2120:-152.838,0,-177.577	0/0:289:286,1:286:10149:1:36:0,-83.1322,-909.805	0/1:117:68,49:68:2422:49:1756:-123.103,0,-183.016	0/0:76:75,0:75:2667:0:0:0,-22.5772,-240.064	0/0:100:100,0:100:3546:0:0:0,-30.103,-319.352	0/1:188:81,107:81:2887:107:3775:-283.356,0,-203.474	0/0:50:49,0:49:1754:0:0:0,-14.7505,-157.785	0/1:103:45,58:45:1604:58:2061:-154.753,0,-113.644	0/1:96:54,41:54:1929:41:1472:-103.818,0,-144.929	0/0:85:84,0:84:2993:0:0:0,-25.2865,-269.243	0/1:165:65,98:65:2318:98:3483:-264.395,0,-159.598	0/1:98:26,70:26:921:70:2516:-197.486,0,-54.0004	0/0:133:131,2:131:4642:2:72:0,-33.2003,-411.11	0/0:108:107,0:107:3797:0:0:0,-32.2102,-341.57
chr05	1729623	.	CTGTT	TTGTG,CTGTG	86221.8	PASS	AB=0.554054,0.439189;ABP=55.5951,69.563;AC=140,46;AF=0.752688,0.247312;AN=186;AO=3221,917;CIGAR=1X3M1X,4M1X;DP=4159;DPB=4161.2;DPRA=22.5924,1.22639;EPP=6988.64,1994.25;EPPR=7.35324;GTI=2;LEN=5,1;MEANALT=1.71739,2.20408;MQM=59.597,59.9935;MQMR=60;NS=93;NUMALT=2;ODDS=2.54238;PAIRED=0,0;PAIREDR=0;PAO=4.5,4.5;PQA=160,160;PQR=0;PRO=2;QA=112232,32657;QR=56;RO=2;RPL=1,0;RPP=6988.64,1994.25;RPPR=7.35324;RPR=3220,917;RUN=1,1;SAF=0,0;SAP=6997.32,1994.25;SAR=3221,917;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:18:0,10,8:0:0:10,8:357,284:-52.6014,-23.4951,-20.4848,-29.462,0,-27.0537	1/2:46:0,22,24:0:0:22,24:761,864:-132.617,-70.8002,-64.1775,-62.1129,0,-54.8881	1/1:90:0,90,0:0:0:90,0:3096,0:-278.703,-27.0927,0,-278.703,-27.0927,-278.703	1/1:120:0,120,0:0:0:120,0:4196,0:-377.714,-36.1236,0,-377.714,-36.1236,-377.714	1/2:4:0,1,3:0:0:1,3:35,108:-12.0173,-9.17208,-8.87105,-3.1976,0,-2.29451	1/1:3:0,2,0:0:0:2,0:72,0:-6.4775,-0.60206,0,-6.4775,-0.60206,-6.4775	1/2:53:0,26,27:0:0:26,27:897,959:-151.345,-78.4976,-70.6708,-73.1971,0,-65.0693	1/1:28:0,28,0:0:0:28,0:990,0:-89.4143,-8.42884,0,-89.4143,-8.42884,-89.4143	1/2:66:0,24,41:0:0:24,41:838,1472:-188.23,-120.074,-112.849,-68.1493,0,-55.8071	1/1:69:0,68,0:0:0:68,0:2374,0:-213.604,-20.47,0,-213.604,-20.47,-213.604	1/1:11:0,11,0:0:0:11,0:394,0:-35.7991,-3.31133,0,-35.7991,-3.31133,-35.7991	1/1:38:0,38,0:0:0:38,0:1351,0:-121.877,-11.4391,0,-121.877,-11.4391,-121.877	1/2:37:0,18,19:0:0:18,19:636,680:-107.604,-55.8096,-50.3911,-52.15,0,-46.4305	1/1:10:0,10,0:0:0:10,0:352,0:-31.4562,-3.0103,0,-31.4562,-3.0103,-31.4562	1/2:17:0,8,9:0:0:8,9:283,320:-49.4803,-26.4331,-24.0248,-23.4016,0,-20.6924	1/1:19:0,19,0:0:0:19,0:668,0:-60.4454,-5.71957,0,-60.4454,-5.71957,-60.4454	1/1:7:0,7,0:0:0:7,0:250,0:-22.8468,-2.10721,0,-22.8468,-2.10721,-22.8468	1/1:12:0,12,0:0:0:12,0:421,0:-38.2214,-3.61236,0,-38.2214,-3.61236,-38.2214	1/1:6:0,6,0:0:0:6,0:215,0:-19.6992,-1.80618,0,-19.6992,-1.80618,-19.6992	1/2:207:0,122,85:0:0:122,85:4231,3043:-592.349,-248.45,-211.724,-344.193,0,-318.605	1/2:102:0,62,40:0:0:62,40:2182,1432:-294.756,-117.136,-98.4725,-177.975,0,-165.934	1/2:34:0,11,22:0:0:11,22:393,779:-95.5417,-63.4975,-60.1862,-32.0858,0,-25.4631	1/2:57:0,30,26:0:0:30,26:1058,923:-161.165,-75.2869,-66.256,-85.9569,0,-78.1301	1/2:37:0,31,6:0:0:31,6:1093,212:-106.596,-17.6186,-8.28669,-89.3304,0,-87.5242	1/1:22:0,22,0:0:0:22,0:777,0:-70.2528,-6.62266,0,-70.2528,-6.62266,-70.2528	1/1:149:0,147,2:0:0:147,2:5077,72:-456.713,-44.2514,0,-450.838,-38.0167,-450.236	1/2:138:0,87,51:0:0:87,51:3020,1828:-394.866,-149.389,-123.2,-245.772,0,-230.42	1/1:12:0,12,0:0:0:12,0:415,0:-37.6667,-3.61236,0,-37.6667,-3.61236,-37.6667	1/2:140:0,87,53:0:0:87,53:3033,1873:-399.55,-152.893,-126.703,-247.009,0,-231.055	1/2:49:0,28,20:0:0:28,20:971,720:-137.658,-58.7483,-50.3195,-78.9042,0,-72.8836	1/2:59:0,34,25:0:0:34,25:1172,859:-165.295,-70.095,-59.86,-95.5442,0,-88.0184	1/2:7:0,5,2:0:0:5,2:178,72:-20.7395,-6.23466,-4.72951,-14.8635,0,-14.2614	1/1:14:0,14,0:0:0:14,0:481,0:-43.6167,-4.21442,0,-43.6167,-4.21442,-43.6167	1/1:1:0,1,0:0:0:1,0:36,0:-3.58923,-0.30103,0,-3.58923,-0.30103,-3.58923	1/2:16:0,11,5:0:0:11,5:381,176:-45.6393,-14.6799,-11.3685,-31.3095,0,-29.8044	1/2:14:0,11,2:0:0:11,2:358,72:-34.7415,-5.87483,-2.5635,-28.8622,0,-28.2601	1/1:69:0,69,0:0:0:69,0:2428,0:-218.777,-20.7711,0,-218.777,-20.7711,-218.777	1/1:63:0,63,0:0:0:63,0:2195,0:-197.739,-18.9649,0,-197.739,-18.9649,-197.739	1/1:9:0,8,0:0:0:8,0:282,0:-25.3716,-2.40824,0,-25.3716,-2.40824,-25.3716	.:.:.:.:.:.:.:.	1/1:38:0,38,0:0:0:38,0:1337,0:-120.626,-11.4391,0,-120.626,-11.4391,-120.626	1/2:13:0,8,5:0:0:8,5:284,176:-37.8175,-14.6799,-12.2716,-23.4906,0,-21.9855	1/1:37:0,37,0:0:0:37,0:1300,0:-117.266,-11.1381,0,-117.266,-11.1381,-117.266	1/1:14:0,14,0:0:0:14,0:501,0:-45.4267,-4.21442,0,-45.4267,-4.21442,-45.4267	1/2:20:0,7,13:0:0:7,13:247,468:-58.5828,-38.4647,-36.3575,-20.3693,0,-16.4559	1/2:36:0,25,11:0:0:25,11:891,388:-104.576,-31.946,-24.4203,-72.9834,0,-69.6721	1/1:41:0,41,0:0:0:41,0:1426,0:-128.566,-12.3422,0,-128.566,-12.3422,-128.566	1/2:92:0,57,35:0:0:57,35:1991,1252:-264.397,-102.449,-85.2903,-162.302,0,-151.766	1/1:76:0,76,0:0:0:76,0:2630,0:-236.32,-22.8783,0,-236.32,-22.8783,-236.32	1/1:76:0,75,1:0:0:75,1:2627,36:-236.312,-22.5773,0,-233.374,-19.28,-233.073	1/1:107:0,107,0:0:0:107,0:3703,0:-333.454,-32.2102,0,-333.454,-32.2102,-333.454	1/2:6:0,1,5:0:0:1,5:36,176:-17.6186,-14.6799,-14.3788,-3.29724,0,-1.79209	1/1:92:0,91,0:0:0:91,0:3166,0:-284.744,-27.3937,0,-284.744,-27.3937,-284.744	1/2:42:0,20,20:0:0:20,20:690,720:-114.801,-58.7529,-52.7323,-56.046,0,-50.0254	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:57:0,34,23:0:0:34,23:1194,815:-163.864,-66.6895,-56.4545,-97.4708,0,-90.5471	1/1:19:0,19,0:0:0:19,0:650,0:-58.8193,-5.71957,0,-58.8193,-5.71957,-58.8193	1/2:6:0,3,2:0:0:3,2:108,72:-14.6871,-5.87483,-4.97174,-8.81225,0,-8.21019	1/1:10:0,10,0:0:0:10,0:355,0:-32.2907,-3.0103,0,-32.2907,-3.0103,-32.2907	1/2:23:0,13,9:0:0:13,9:447,324:-62.8655,-26.5593,-22.6459,-36.416,0,-33.7067	1/1:48:0,47,1:0:0:47,1:1647,36:-148.089,-14.1484,0,-145.152,-10.8512,-144.851	1/1:6:0,5,0:0:0:5,0:169,0:-15.3213,-1.50515,0,-15.3213,-1.50515,-15.3213	1/2:135:0,88,45:0:0:88,45:3002,1616:-375.389,-131.891,-105.4,-243.558,0,-230.011	1/2:63:0,39,24:0:0:39,24:1363,864:-181.707,-70.8578,-59.1177,-111.205,0,-103.98	1/2:31:0,21,10:0:0:21,10:734,356:-89.0692,-29.3709,-23.0493,-60.052,0,-57.0417	1/2:45:0,32,12:0:0:32,12:1122,408:-124.432,-33.1203,-23.4874,-91.3419,0,-87.7295	1/1:53:0,53,0:0:0:53,0:1854,0:-167.136,-15.9546,0,-167.136,-15.9546,-167.136	1/2:82:0,32,50:0:0:32,50:1116,1776:-235.831,-145.072,-135.439,-91.1102,0,-76.0587	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/1:39:0,39,0:0:0:39,0:1351,0:-121.844,-11.7402,0,-121.844,-11.7402,-121.844	1/2:24:0,6,18:0:0:6,18:213,644:-70.2268,-52.8721,-51.0659,-17.7102,0,-12.2917	1/1:13:0,13,0:0:0:13,0:456,0:-41.373,-3.91339,0,-41.373,-3.91339,-41.373	1/1:57:0,57,0:0:0:57,0:1997,0:-179.99,-17.1587,0,-179.99,-17.1587,-179.99	1/1:77:0,77,0:0:0:77,0:2689,0:-242.243,-23.1793,0,-242.243,-23.1793,-242.243	1/1:54:0,53,1:0:0:53,1:1802,32:-161.201,-15.9546,0,-158.623,-13.0565,-158.322	1/1:101:0,101,0:0:0:101,0:3498,0:-314.991,-30.404,0,-314.991,-30.404,-314.991	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:67:0,67,0:0:0:67,0:2320,0:-209.05,-20.169,0,-209.05,-20.169,-209.05	1/2:13:0,2,11:0:0:2,11:72,383:-37.3686,-31.4919,-30.8899,-6.23466,0,-2.92333	1/2:70:0,29,41:0:0:29,41:1026,1472:-204,-120.434,-111.704,-83.9216,0,-71.5794	1/2:43:0,25,18:0:0:25,18:843,629:-119.823,-51.5152,-43.9895,-68.6519,0,-63.2334	1/1:121:0,120,0:0:0:120,0:4184,0:-376.382,-36.1236,0,-376.382,-36.1236,-376.382	1/2:18:0,10,8:0:0:10,8:353,288:-52.6007,-23.8592,-20.8489,-29.0983,0,-26.69	1/1:23:0,22,0:0:0:22,0:782,0:-70.3615,-6.62266,0,-70.3615,-6.62266,-70.3615	1/1:11:0,11,0:0:0:11,0:380,0:-34.5316,-3.31133,0,-34.5316,-3.31133,-34.5316	1/2:39:0,21,18:0:0:21,18:748,647:-114.04,-53.0863,-46.7646,-61.2564,0,-55.8379	1/1:12:0,12,0:0:0:12,0:419,0:-38.0409,-3.61236,0,-38.0409,-3.61236,-38.0409	1/2:22:0,9,13:0:0:9,13:313,455:-62.7593,-37.3686,-34.6593,-25.7388,0,-21.8255	1/2:41:1,21,19:1:30:21,19:749,680:-113.85,-53.1111,-49.1851,-58.6982,0,-55.3746	1/1:10:0,10,0:0:0:10,0:351,0:-31.9208,-3.0103,0,-31.9208,-3.0103,-31.9208	1/2:22:0,10,12:0:0:10,12:348,408:-61.7309,-33.4317,-30.4214,-28.6434,0,-25.031	1/2:25:1,6,18:1:26:6,18:191,644:-65.6416,-50.5733,-50.8008,-13.3987,0,-10.0106	1/1:91:0,91,0:0:0:91,0:3178,0:-286.128,-27.3937,0,-286.128,-27.3937,-286.128	1/1:36:0,36,0:0:0:36,0:1254,0:-113.162,-10.8371,0,-113.162,-10.8371,-113.162
chr05	1729670	.	T	C	136058	PASS	AB=0.485918;ABP=11.4498;AC=141;AF=0.75;AN=188;AO=6557;CIGAR=1X;DP=9096;DPB=9096;DPRA=97.7957;EPP=14241.4;EPPR=5496.84;GTI=4;LEN=1;MEANALT=1.09677;MQM=59.9803;MQMR=59.9945;NS=94;NUMALT=1;ODDS=0.579634;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=234502;QR=90507;RO=2530;RPL=0;RPP=14241.4;RPPR=5470.81;RPR=6557;RUN=1;SAF=6557;SAP=14241.4;SAR=0;SRF=2527;SRP=5470.81;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:21,50:21:756:50:1769:-138.118,0,-46.9941	0/1:70:31,39:31:1108:39:1396:-104.867,0,-78.9589	1/1:160:0,160:0:0:160:5696:-512.762,-48.1648,0	1/1:250:0,250:0:0:250:8952:-805.29,-75.2575,0	0/1:48:27,21:27:964:21:756:-53.9178,0,-72.6274	0/1:69:36,33:36:1292:33:1176:-85.3767,0,-95.8127	0/1:64:50,14:50:1788:14:504:-26.4322,0,-141.937	1/1:86:0,86:0:0:86:3061:-275.719,-25.8886,0	0/1:151:82,69:82:2940:69:2464:-176.559,0,-219.377	1/1:45:0,45:0:0:45:1593:-143.658,-13.5464,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:145:0,145:0:0:145:5184:-466.701,-43.6494,0	0/1:83:32,51:32:1144:51:1828:-139.815,0,-78.284	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:70:34,36:34:1211:36:1288:-95.1515,0,-88.2234	1/1:65:1,64:1:36:64:2285:-202.313,-15.9687,0	1/1:41:1,40:1:36:40:1430:-125.399,-8.74396,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:215:101,114:101:3620:114:4060:-300.868,0,-261.284	0/1:234:113,120:113:4032:120:4288:-315.599,0,-292.57	0/1:150:78,72:78:2804:72:2584:-187.654,0,-207.445	0/1:173:84,89:84:3012:89:3173:-233.715,0,-219.233	0/1:63:6,57:6:216:57:2044:-165.267,0,-0.825622	1/1:88:0,88:0:0:88:3144:-283.181,-26.4906,0	1/1:199:2,197:2:72:197:7052:-627.905,-53.0682,0	0/1:388:198,190:198:7085:190:6793:-494.642,0,-520.909	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:449:234,215:234:8349:215:7698:-557.69,0,-616.256	0/1:99:52,47:52:1860:47:1688:-122.405,0,-137.878	0/1:168:85,83:85:3032:83:2972:-217.14,0,-222.538	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93011	1/1:211:0,211:0:0:211:7547:-679.271,-63.5173,0	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:95:4,91:4:144:91:3239:-278.419,-15.2842,0	0/1:33:15,18:15:536:18:636:-47.634,0,-38.6408	1/1:168:2,165:2:72:165:5896:-523.915,-43.7951,0	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	0/1:73:40,33:40:1428:33:1184:-84.8931,0,-106.842	0/1:149:87,62:87:3112:62:2220:-155.211,0,-235.454	1/1:102:0,102:0:0:102:3644:-328.165,-30.7051,0	0/1:147:79,68:79:2824:68:2436:-175.244,0,-210.148	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:140:1,139:1:36:139:4980:-444.75,-38.5459,0	1/1:98:0,97:0:0:97:3468:-311.973,-29.1999,0	0/1:15:2,13:2:72:13:464:-37.5821,0,-2.32127	1/1:90:1,89:1:36:89:3184:-283.19,-23.4981,0	0/1:58:22,35:22:792:35:1256:-95.8268,0,-54.0871	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/1:192:98,94:98:3516:94:3368:-245.538,0,-258.851	1/1:61:0,61:0:0:61:2161:-194.756,-18.3628,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:53:25,28:25:896:28:1000:-74.3608,0,-65.0058	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:202:101,100:101:3604:100:3580:-261.54,0,-263.701	0/1:137:72,65:72:2564:65:2336:-169.256,0,-189.77	0/1:36:17,19:17:612:19:684:-51.0532,0,-44.5764	0/1:81:48,33:48:1724:33:1180:-81.7538,0,-131.062	1/1:176:0,176:0:0:176:6292:-566.37,-52.9813,0	0/1:145:108,37:108:3872:37:1324:-75.8127,0,-305.025	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:44:23,21:23:824:21:756:-55.1219,0,-61.238	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:62:0,62:0:0:62:2199:-198.175,-18.6639,0	1/1:83:0,82:0:0:82:2928:-263.395,-24.6845,0	1/1:228:0,228:0:0:228:8157:-734.143,-68.6348,0	1/1:181:1,180:1:36:180:6468:-578.605,-50.8886,0	0/1:88:44,44:44:1580:44:1576:-115.641,0,-116.001	1/1:92:0,91:0:0:91:3256:-292.901,-27.3937,0	0/1:16:11,5:11:384:5:180:-11.7356,0,-30.0782	0/1:96:53,43:53:1896:43:1540:-109.994,0,-142.019	0/1:172:93,79:93:3324:79:2816:-201.903,0,-247.601	1/1:192:0,191:0:0:191:6832:-614.74,-57.4967,0	0/1:52:28,24:28:1000:24:856:-61.7075,0,-74.6618	1/1:71:0,71:0:0:71:2544:-229.21,-21.3731,0	1/1:45:0,45:0:0:45:1608:-145.008,-13.5464,0	0/1:155:76,78:76:2724:78:2800:-205.521,0,-198.685	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:68:39,29:39:1392:29:1036:-73.0839,0,-105.109	0/1:71:30,41:30:1080:41:1467:-110.952,0,-76.1401	1/1:32:1,31:1:36:31:1102:-95.8914,-6.03469,0	0/1:101:53,48:53:1900:48:1720:-124.681,0,-140.874	0/1:121:75,46:75:2666:46:1644:-111.824,0,-203.758	1/1:125:0,125:0:0:125:4480:-403.177,-37.6288,0	1/1:128:0,128:0:0:128:4580:-412.365,-38.5318,0
chr05	1789198	.	C	T	47652.1	PASS	AB=0.288023;ABP=5461.28;AC=89;AF=0.473404;AN=188;AO=4065;CIGAR=1X;DP=14434;DPB=14434;DPRA=12.1682;EPP=8830.05;EPPR=22508.2;GTI=17;LEN=1;MEANALT=1.05495;MQM=59.8096;MQMR=59.9752;NS=94;NUMALT=1;ODDS=0.527356;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145024;QR=371159;RO=10364;RPL=0;RPP=8830.05;RPPR=22508.2;RPR=4065;RUN=1;SAF=4065;SAP=8830.05;SAR=0;SRF=10364;SRP=22508.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:37,9:37:1332:9:324:-15.6585,0,-106.335	0/1:228:184,44:184:6586:44:1565:-72.5048,0,-523.626	0/1:184:134,50:134:4812:50:1765:-103.742,0,-377.844	0/1:483:349,134:349:12486:134:4784:-285.258,0,-978.148	0/1:94:81,13:81:2904:13:464:-13.8001,0,-233.299	0/1:105:91,13:91:3264:13:453:-9.4335,0,-262.313	0/1:231:188,43:188:6744:43:1533:-68.7213,0,-537.471	0/1:132:73,59:73:2616:59:2124:-151.692,0,-195.952	0/1:215:168,47:168:6028:47:1673:-86.1289,0,-477.901	0/1:66:42,24:42:1508:24:864:-58.2119,0,-116.147	0/1:36:18,18:18:644:18:648:-47.813,0,-47.4532	0/1:118:82,36:82:2944:36:1266:-78.7171,0,-229.672	0/1:132:107,25:107:3848:25:900:-41.5851,0,-306.778	0/1:116:66,50:66:2368:50:1800:-127.358,0,-178.459	0/1:88:41,47:41:1476:47:1676:-124.574,0,-106.646	0/1:72:31,41:31:1112:41:1476:-111.462,0,-78.7172	0/1:81:45,36:45:1620:36:1296:-92.4544,0,-121.707	0/1:94:63,31:63:2260:31:1116:-72.4533,0,-175.321	0/1:36:16,20:16:576:20:701:-52.5746,0,-41.3379	0/1:393:324,69:324:11560:69:2465:-103.787,0,-921.965	0/1:166:133,33:133:4772:33:1180:-56.5163,0,-379.664	0/1:156:130,26:130:4619:26:936:-37.5911,0,-368.908	0/1:190:160,30:160:5744:30:1061:-38.5937,0,-459.878	0/1:124:77,47:77:2738:47:1688:-114.878,0,-209.332	0/1:118:83,35:83:2972:35:1252:-77.4631,0,-232.191	0/1:375:198,177:198:7093:177:6319:-455.887,0,-525.541	0/1:363:303,60:303:10830:60:2141:-83.6813,0,-865.327	0/1:51:28,23:28:1008:23:824:-59.1308,0,-75.6838	0/1:420:341,79:341:12229:79:2842:-129.582,0,-974.012	0/1:112:81,31:81:2904:31:1116:-67.0343,0,-227.88	0/1:230:193,37:193:6917:37:1320:-49.8599,0,-553.351	0/1:12:6,6:6:216:6:212:-15.812,0,-16.1782	0/1:46:21,25:21:756:25:896:-67.0333,0,-54.5198	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:31:17,14:17:612:14:504:-36.3652,0,-46.0815	0/1:276:157,119:157:5616:119:4253:-299.841,0,-422.478	0/1:261:142,119:142:5043:119:4260:-305.006,0,-375.446	0/1:45:16,29:16:572:29:1040:-80.2808,0,-38.2671	0/1:22:18,4:18:633:4:144:-6.68931,0,-50.6724	0/1:261:159,102:159:5700:102:3630:-248.322,0,-434.548	0/0:40:38,2:38:1356:2:72:0,-5.20448,-115.504	0/1:116:56,60:56:1995:60:2141:-158.035,0,-144.904	0/1:66:27,39:27:968:39:1377:-104.331,0,-67.5694	0/1:98:76,22:76:2724:22:792:-42.1038,0,-215.902	0/1:240:202,38:202:7206:38:1349:-49.4611,0,-576.275	0/1:214:146,68:146:5248:68:2402:-152.014,0,-408.034	0/1:450:388,62:388:13863:62:2207:-63.4223,0,-1111.98	0/1:246:166,80:166:5960:80:2838:-181.601,0,-462.451	0/1:125:71,54:71:2552:54:1944:-137.601,0,-192.301	0/1:406:274,132:274:9798:132:4691:-300.12,0,-759.545	0/1:47:42,5:42:1474:5:180:-2.40273,0,-118.802	0/1:240:164,76:164:5892:76:2724:-173.156,0,-458.14	0/0:137:124,13:124:4441:13:453:0,-0.141535,-358.759	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:170:134,36:134:4778:36:1284:-64.6871,0,-379	0/1:98:68,30:68:2421:30:1076:-67.6519,0,-188.644	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:27:22,5:22:784:5:180:-8.42268,0,-62.7561	0/1:68:51,17:51:1828:17:600:-33.8588,0,-144.331	0/1:196:122,74:122:4388:74:2660:-180.638,0,-336.089	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:440:352,88:352:12616:88:3145:-150.818,0,-1002.77	0/1:242:207,34:207:7436:34:1205:-35.8452,0,-596.373	0/1:51:39,12:39:1396:12:428:-23.5059,0,-110.587	0/1:181:148,33:148:5301:33:1188:-52.7376,0,-422.736	0/1:240:96,144:96:3414:144:5112:-387.815,0,-235.224	0/1:114:88,26:88:3156:26:898:-46.8101,0,-249.947	0/1:25:18,7:18:648:7:252:-15.5032,0,-51.1261	0/1:153:108,44:108:3884:44:1580:-96.3752,0,-303.636	0/1:150:119,31:119:4260:31:1112:-55.2322,0,-338.309	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:191:150,41:150:5388:41:1446:-72.8416,0,-427.544	0/1:53:25,28:25:900:28:1008:-75.0818,0,-65.3664	0/1:272:161,111:161:5784:111:3906:-269.839,0,-438.792	0/1:397:263,134:263:9413:134:4728:-306.164,0,-727.621	0/1:107:87,20:87:3124:20:712:-32.1964,0,-248.549	0/1:94:31,63:31:1112:63:2241:-173.634,0,-72.0945	0/1:30:18,12:18:648:12:432:-30.1903,0,-49.621	0/1:223:195,28:195:6973:28:1008:-23.9063,0,-560.504	0/0:230:210,19:210:7510:19:669:0,-8.81213,-615.445	0/1:366:255,110:255:9107:110:3930:-243.652,0,-709.348	0/1:201:156,45:156:5584:45:1612:-84.8603,0,-442.175	0/1:84:51,33:51:1832:33:1188:-81.9408,0,-139.874	0/1:84:41,43:41:1476:43:1514:-111.255,0,-107.85	0/1:288:243,45:243:8705:45:1616:-59.0222,0,-696.741	0/1:59:19,40:19:684:40:1436:-111.775,0,-44.1296	0/1:111:92,19:92:3308:19:680:-28.1133,0,-264.523	0/1:130:110,20:110:3941:20:716:-25.6338,0,-315.746	0/1:50:25,25:25:900:25:900:-66.2695,0,-66.2695	0/1:97:60,37:60:2156:37:1332:-90.9825,0,-165.107	0/1:37:26,11:26:936:11:396:-24.8437,0,-73.4214	0/1:310:233,77:233:8345:77:2764:-155.679,0,-657.735	0/1:173:114,59:114:4096:59:2101:-137.273,0,-316.745
chr05	1789384	.	A	G	67537.5	PASS	AB=0.316535;ABP=4603.6;AC=91;AF=0.484043;AN=188;AO=4984;CIGAR=1X;DP=15805;DPB=15805;DPRA=0;EPP=9302.52;EPPR=21596.6;GTI=16;LEN=1;MEANALT=1.06383;MQM=42.6864;MQMR=37.8053;NS=94;NUMALT=1;ODDS=2.742;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178265;QR=387703;RO=10814;RPL=4802;RPP=9302.52;RPPR=21596.6;RPR=182;RUN=1;SAF=0;SAP=10825.6;SAR=4984;SRF=0;SRP=23485.3;SRR=10814;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:28,5:28:1000:5:180:-6.211,0,-74.2529	0/1:257:168,89:168:6031:89:3164:-200.649,0,-369.616	0/1:205:146,59:146:5235:59:2089:-122.849,0,-340.225	0/1:384:239,145:239:8545:145:5208:-340.781,0,-516.939	0/1:53:45,8:45:1616:8:288:-9.74877,0,-110.629	0/1:91:74,17:74:2656:17:603:-25.6999,0,-173.765	0/1:289:205,84:205:7344:84:2993:-174.09,0,-482.051	0/1:359:290,69:290:10381:69:2462:-108.979,0,-681.695	0/1:101:76,25:76:2717:25:900:-49.3105,0,-190.649	0/1:101:84,17:84:3004:17:593:-21.4326,0,-206.25	0/1:78:58,20:58:2080:20:720:-39.7934,0,-126.901	0/1:181:109,72:109:3916:72:2586:-173.398,0,-237.443	0/1:168:129,39:129:4628:39:1396:-71.4506,0,-296.433	0/1:128:100,28:100:3574:28:999:-49.7981,0,-213.562	0/1:79:62,17:62:2223:17:608:-29.9425,0,-161.05	0/1:77:53,24:53:1904:24:860:-52.9063,0,-137.099	0/1:123:85,38:85:3048:38:1349:-81.8948,0,-189.178	0/1:100:46,54:46:1643:54:1927:-139.354,0,-97.9138	0/1:62:39,23:39:1400:23:828:-54.5558,0,-98.374	0/1:306:247,59:247:8830:59:2116:-92.6784,0,-618.665	0/1:128:86,42:86:3092:42:1504:-94.2752,0,-223.008	0/1:143:106,37:106:3812:37:1319:-71.5522,0,-264.299	0/1:130:85,45:85:3037:45:1608:-100.598,0,-211.408	0/1:131:114,17:114:4064:17:608:-13.9783,0,-284.239	0/1:132:77,55:77:2768:55:1954:-132.404,0,-172.25	0/1:423:276,146:276:9900:146:5198:-326.25,0,-619.8	0/1:362:198,164:198:7108:164:5892:-407.899,0,-456.194	0/1:46:30,16:30:1076:16:576:-37.2072,0,-65.6873	0/1:367:263,104:263:9440:104:3732:-216.179,0,-598.574	0/1:131:103,28:103:3676:28:1008:-49.2282,0,-273.298	0/1:206:157,47:157:5632:47:1673:-84.8147,0,-352.536	0/1:14:6,8:6:216:8:284:-20.1798,0,-15.2472	0/1:22:17,5:17:608:5:180:-9.07694,0,-37.1185	0/1:17:8,9:8:288:9:324:-23.8252,0,-16.9235	0/0:17:16,1:16:576:1:36:0,-1.51923,-43.2378	0/0:35:34,1:34:1220:1:36:0,-7.01504,-100.662	0/1:357:266,91:266:9559:91:3259:-178.046,0,-580.366	0/1:407:331,76:331:11888:76:2724:-117.335,0,-745.555	0/1:83:47,36:47:1692:36:1296:-89.5868,0,-114.358	0/1:15:10,5:10:360:5:180:-11.6441,0,-24.1774	0/1:221:110,111:110:3952:111:3955:-281.382,0,-230.81	0/1:75:62,13:62:2232:13:468:-19.0408,0,-145.972	0/1:115:88,27:88:3164:27:972:-51.2434,0,-229.192	0/1:69:48,21:48:1724:21:752:-45.3747,0,-116.133	0/1:125:96,29:96:3452:29:1040:-53.776,0,-230.406	0/1:174:114,60:114:4076:60:2144:-136.065,0,-270.864	0/1:316:172,143:172:6163:143:5120:-352.844,0,-403.948	0/1:541:265,275:265:9494:275:9795:-690.783,0,-589.639	0/1:194:134,60:134:4797:60:2139:-129.206,0,-270.283	0/1:278:219,59:219:7831:59:2112:-100.19,0,-522.939	0/1:328:195,133:195:6995:133:4780:-317.939,0,-385.596	0/1:17:14,3:14:495:3:108:-4.69005,0,-35.6672	0/1:291:208,83:208:7468:83:2976:-173.38,0,-474.834	0/1:63:30,33:30:1080:33:1179:-83.6908,0,-69.3772	0/1:44:38,6:38:1364:6:216:-6.12023,0,-86.4231	0/1:201:149,52:149:5328:52:1868:-103.848,0,-355.512	0/1:54:39,15:39:1404:15:540:-31.1839,0,-92.5098	0/0:17:16,1:16:567:1:36:0,-1.61481,-41.1194	0/1:58:18,40:18:648:40:1425:-104.933,0,-35.1475	0/1:101:84,17:84:3012:17:608:-22.5898,0,-202.981	0/1:233:171,62:171:6144:62:2228:-125.068,0,-385.893	0/1:10:7,3:7:252:3:108:-6.79726,0,-15.8727	0/1:345:245,99:245:8787:99:3537:-206.741,0,-584.868	0/1:319:250,69:250:8972:69:2468:-120.191,0,-575.051	0/1:59:50,9:50:1796:9:324:-11.1819,0,-132.153	0/1:200:117,83:117:4192:83:2963:-198.702,0,-254.767	0/1:234:169,65:169:6060:65:2324:-132.656,0,-374.212	0/1:121:109,12:109:3912:12:432:-1.77142,0,-299.981	0/1:49:30,19:30:1076:19:672:-44.3482,0,-63.1445	0/1:186:126,60:126:4507:60:2152:-133.942,0,-263.598	0/1:210:164,46:164:5900:46:1656:-78.2486,0,-364.993	0/1:40:27,13:27:968:13:464:-28.799,0,-68.3249	0/1:310:208,102:208:7476:102:3637:-226.609,0,-461.798	0/1:83:58,25:58:2084:25:896:-54.1121,0,-141.034	0/1:297:230,67:230:8229:67:2372:-117.855,0,-491.709	0/1:299:156,143:156:5584:143:5119:-358.099,0,-333.867	0/1:186:124,62:124:4435:62:2219:-138.332,0,-295.699	0/1:146:107,39:107:3848:39:1400:-79.391,0,-278.204	0/1:58:33,25:33:1158:25:896:-61.8647,0,-62.3188	0/1:360:231,128:231:8292:128:4560:-292.667,0,-477.101	0/1:211:161,50:161:5747:50:1778:-91.6306,0,-391.471	0/1:499:323,176:323:11574:176:6299:-398.823,0,-685.401	0/1:212:164,48:164:5884:48:1720:-85.8392,0,-389.25	0/1:113:54,59:54:1935:59:2120:-151.144,0,-121.29	0/1:90:66,24:66:2363:24:860:-46.6656,0,-162.294	0/1:275:165,110:165:5915:110:3956:-262.963,0,-357.564	0/1:59:51,8:51:1836:8:288:-7.94259,0,-140.615	0/1:151:111,40:111:3992:40:1432:-80.9922,0,-257.562	0/1:173:110,63:110:3942:63:2268:-147.986,0,-241.938	0/1:70:38,32:38:1359:32:1152:-79.5887,0,-76.23	0/1:146:100,46:100:3579:46:1648:-101.254,0,-239.273	0/1:37:31,6:31:1116:6:216:-8.21435,0,-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chr05	1789386	.	T	C	22530.3	PASS	AB=0.273589;ABP=3197.72;AC=44;AF=0.234043;AN=188;AO=1986;CIGAR=1X;DP=15790;DPB=15790;DPRA=1.19331;EPP=3737.05;EPPR=27107.6;GTI=8;LEN=1;MEANALT=1.05357;MQM=42.7039;MQMR=38.8072;NS=94;NUMALT=1;ODDS=0.0142097;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70817;QR=492610;RO=13801;RPL=1917;RPP=3737.05;RPPR=27107.6;RPR=69;RUN=1;SAF=0;SAP=4315.55;SAR=1986;SRF=0;SRP=29971.5;SRR=13801;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:24,8:24:845:8:275:-14.4952,0,-61.1172	0/1:261:217,44:217:7755:44:1554:-58.6277,0,-518.872	0/0:208:208,0:208:7434:0:0:0,-62.6142,-594.267	0/0:387:386,1:386:13744:1:36:0,-112.996,-1081.49	0/1:53:38,15:38:1360:15:529:-31.0053,0,-88.3473	0/1:88:64,24:64:2285:24:864:-49.7764,0,-144.464	0/1:286:186,100:186:6574:100:3554:-223.754,0,-416.987	0/0:356:356,0:356:12723:0:0:0,-107.167,-999.646	0/1:103:75,28:75:2688:28:1004:-56.4789,0,-186.549	0/0:102:102,0:102:3625:0:0:0,-30.7051,-290.277	0/0:78:78,0:78:2804:0:0:0,-23.4803,-213.344	0/0:185:185,0:185:6614:0:0:0,-55.6905,-525.711	0/1:165:112,53:112:4024:53:1881:-116.476,0,-241.253	0/0:130:130,0:130:4649:0:0:0,-39.1339,-343.288	0/0:77:77,0:77:2764:0:0:0,-23.1793,-232.832	0/0:78:78,0:78:2804:0:0:0,-23.4803,-239.19	0/0:122:122,0:122:4373:0:0:0,-36.7257,-342.522	0/0:100:100,0:100:3588:0:0:0,-30.103,-297.902	0/0:61:61,0:61:2184:0:0:0,-18.3628,-186.038	0/1:303:200,103:200:7180:103:3678:-230.302,0,-473.928	0/1:132:90,42:90:3180:42:1478:-90.8212,0,-230.042	0/1:143:83,60:83:2949:60:2152:-145.324,0,-187.886	0/1:130:95,35:95:3374:35:1260:-71.0842,0,-239.847	0/0:133:133,0:133:4737:0:0:0,-40.037,-381.914	0/0:133:133,0:133:4734:0:0:0,-40.037,-385.412	0/0:421:417,4:417:14844:4:144:0,-113.774,-1164.43	0/1:364:282,82:282:10075:82:2931:-146.765,0,-714.646	0/0:49:49,0:49:1764:0:0:0,-14.7505,-138.651	0/1:366:255,111:255:9058:111:3977:-237.916,0,-568.819	0/1:129:81,48:81:2908:48:1728:-113.452,0,-206.775	0/1:207:159,48:159:5666:48:1694:-86.466,0,-352.874	0/1:14:10,4:10:360:4:144:-8.81331,0,-26.9389	0/0:22:22,0:22:788:0:0:0,-6.62266,-59.1125	0/1:17:12,5:12:432:5:180:-11.0791,0,-29.686	0/0:17:17,0:17:612:0:0:0,-5.11751,-50.1111	0/1:34:30,4:30:1061:4:140:-2.46509,0,-79.8493	0/0:355:355,0:355:12725:0:0:0,-106.866,-962.941	0/0:405:405,0:405:14452:0:0:0,-121.917,-1092.52	0/0:82:82,0:82:2925:0:0:0,-24.6845,-248.09	0/0:15:15,0:15:525:0:0:0,-4.51545,-44.2943	0/0:222:221,1:221:7928:1:36:0,-63.3076,-642.984	0/1:73:53,20:53:1889:20:720:-41.6343,0,-117.863	0/0:114:114,0:114:4084:0:0:0,-34.3174,-345.007	0/0:69:69,0:69:2476:0:0:0,-20.7711,-202.621	0/1:125:96,29:96:3444:29:1040:-53.9175,0,-229.69	0/1:174:135,39:135:4833:39:1370:-68.1245,0,-338.06	0/0:316:315,1:315:11179:1:36:0,-92.1447,-936.747	0/1:536:380,154:380:13504:154:5525:-320.358,0,-944.102	0/0:194:194,0:194:6930:0:0:0,-58.3998,-514.005	0/0:276:275,1:275:9820:1:36:0,-79.5816,-774.861	0/0:328:327,1:327:11675:1:36:0,-95.8351,-889.764	0/1:17:15,2:15:536:2:72:-1.53762,0,-39.3242	0/0:293:293,0:293:10446:0:0:0,-88.2018,-820.801	0/1:63:53,10:53:1904:10:345:-11.6301,0,-140.457	0/1:43:31,12:31:1104:12:432:-25.6794,0,-63.5749	0/1:203:137,66:137:4837:66:2349:-145.765,0,-309.866	0/0:55:55,0:55:1953:0:0:0,-16.5566,-156.047	0/1:19:9,10:9:324:10:356:-25.2755,0,-18.1764	0/0:58:53,5:53:1908:5:165:0,-4.12322,-148.377	0/1:102:77,25:77:2737:25:888:-47.4502,0,-177.989	0/0:232:232,0:232:8290:0:0:0,-69.839,-643.325	0/1:11:8,3:8:288:3:108:-6.49623,0,-18.1835	0/1:345:229,116:229:8104:116:4100:-255.423,0,-522.72	0/1:312:245,67:245:8777:67:2364:-113.627,0,-561.269	0/1:59:43,16:43:1540:16:557:-31.6826,0,-109.683	0/1:200:165,35:165:5901:35:1244:-48.6777,0,-402.415	0/0:237:237,0:237:8419:0:0:0,-71.3441,-651.074	0/1:117:65,52:65:2291:52:1864:-127.964,0,-159.015	0/0:49:49,0:49:1748:0:0:0,-14.7505,-136.686	0/0:186:186,0:186:6631:0:0:0,-55.9916,-504.227	0/1:207:158,49:158:5653:49:1745:-90.8289,0,-343.587	0/0:40:40,0:40:1401:0:0:0,-12.0412,-118.624	0/0:309:306,2:306:10934:2:72:0,-86.3247,-852.346	0/0:82:82,0:82:2928:0:0:0,-24.6845,-240.582	0/0:303:303,0:303:10865:0:0:0,-91.2121,-808.784	0/0:298:297,1:297:10522:1:36:0,-86.2042,-852.32	0/1:184:125,59:125:4473:59:2120:-131.887,0,-297.925	0/0:148:146,2:146:5217:2:72:0,-37.8625,-435.787	0/0:58:55,3:55:1972:3:108:0,-7.60092,-139.705	0/1:362:284,78:284:10155:78:2796:-137.405,0,-639.922	0/1:207:140,67:140:4975:67:2393:-148.823,0,-322.04	0/0:497:497,0:497:17742:0:0:0,-149.612,-1370.92	0/1:211:156,55:156:5566:55:1980:-108.885,0,-361.191	0/0:112:112,0:112:4024:0:0:0,-33.7154,-336.771	0/0:91:91,0:91:3272:0:0:0,-27.3937,-266.442	0/1:275:219,56:219:7838:56:2008:-92.6762,0,-526.204	0/0:57:57,0:57:2044:0:0:0,-17.1587,-176.645	0/1:152:113,39:113:4052:39:1400:-78.0027,0,-262.513	0/1:168:142,26:142:5072:26:905:-29.619,0,-346.114	0/0:70:69,1:69:2476:1:36:0,-18.0913,-192.079	0/1:146:102,44:102:3656:44:1580:-95.5331,0,-244.663	0/1:37:17,20:17:612:20:720:-52.2773,0,-43.2504	0/0:205:205,0:205:7341:0:0:0,-61.7111,-586.685	0/0:200:200,0:200:7134:0:0:0,-60.206,-557.266
chr05	1789403	.	C	T	53412.1	PASS	AB=0.306139;ABP=4804.52;AC=86;AF=0.457447;AN=188;AO=4579;CIGAR=1X;DP=15748;DPB=15748;DPRA=11.4295;EPP=9946.18;EPPR=24256.2;GTI=17;LEN=1;MEANALT=1;MQM=48.0214;MQMR=35.7582;NS=94;NUMALT=1;ODDS=0.790554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160818;QR=399240;RO=11169;RPL=4579;RPP=9946.18;RPPR=24256.2;RPR=0;RUN=1;SAF=0;SAP=9946.18;SAR=4579;SRF=0;SRP=24256.2;SRR=11169;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:20,13:20:701:13:460:-31.3759,0,-46.9023	0/1:258:205,53:205:7356:53:1849:-86.9408,0,-481.849	0/1:208:116,92:116:4122:92:3238:-225.265,0,-241.617	0/1:387:261,126:261:9312:126:4457:-281.669,0,-573.884	0/1:52:39,13:39:1400:13:456:-25.4533,0,-91.6332	0/1:88:75,13:75:2681:13:453:-14.0505,0,-178.671	0/1:284:245,39:245:8776:39:1340:-34.3065,0,-607.994	0/1:361:189,172:189:6762:172:6054:-428.457,0,-359.152	0/1:99:72,27:72:2584:27:944:-54.5708,0,-178.201	0/1:102:45,57:45:1597:57:1986:-147.463,0,-78.2107	0/1:77:49,28:49:1764:28:1004:-67.0884,0,-96.997	0/1:185:122,63:122:4338:63:2217:-141.871,0,-271.587	0/1:166:145,21:145:5187:21:744:-16.1005,0,-346.498	0/1:129:84,45:84:2993:45:1585:-102.768,0,-158.595	0/1:80:28,52:28:1000:52:1810:-138.158,0,-50.8383	0/1:78:34,44:34:1216:44:1564:-116.168,0,-74.3784	0/1:119:74,45:74:2641:45:1593:-105.538,0,-153.049	0/1:99:68,31:68:2444:31:1096:-67.6961,0,-166.757	0/1:61:30,31:30:1057:31:1108:-80.1276,0,-67.9501	0/1:304:228,76:228:8169:76:2652:-146.121,0,-556.934	0/1:130:96,34:96:3444:34:1181:-65.5215,0,-252.623	0/1:140:124,16:124:4406:16:568:-9.17511,0,-314.735	0/1:128:98,30:98:3497:30:1053:-56.1634,0,-248.646	0/1:131:49,82:49:1760:82:2849:-214.742,0,-79.0633	0/1:134:86,48:86:3073:48:1678:-109.791,0,-196.541	0/1:421:259,162:259:9183:162:5670:-379.864,0,-550.453	0/1:367:301,66:301:10747:66:2328:-97.6455,0,-767.598	0/1:49:32,17:32:1144:17:597:-38.3515,0,-69.4266	0/1:366:310,56:310:11113:56:1950:-64.4301,0,-742.42	0/1:130:89,41:89:3196:41:1452:-90.6412,0,-229.487	0/1:205:168,37:168:6005:37:1297:-54.3549,0,-381.302	0/1:13:11,2:11:396:2:72:-2.87613,0,-30.3144	0/1:21:17,4:17:593:4:140:-6.53098,0,-35.9533	0/0:17:17,0:17:612:0:0:0,-5.11751,-50.6577	0/1:17:15,2:15:540:2:72:-1.62249,0,-38.6044	0/0:34:31,3:31:1112:3:108:0,-0.676872,-85.6775	0/1:356:218,138:218:7814:138:4795:-323.19,0,-419.741	0/1:402:232,170:232:8267:170:5945:-408.137,0,-426.334	0/1:82:50,32:50:1792:32:1136:-76.3971,0,-124.499	0/0:15:15,0:15:536:0:0:0,-4.51545,-44.1514	0/1:219:159,60:159:5693:60:2097:-120.721,0,-383.578	0/1:74:55,19:55:1956:19:642:-35.2352,0,-123.413	0/1:116:43,73:43:1540:73:2581:-195.67,0,-82.2862	0/1:69:36,33:36:1292:33:1169:-84.0894,0,-76.2672	0/1:125:90,35:90:3223:35:1248:-74.445,0,-207.916	0/1:175:131,44:131:4680:44:1548:-86.2063,0,-321.01	0/1:317:190,127:190:6779:127:4521:-305.798,0,-453.56	0/0:542:500,42:500:17912:42:1477:0,-30.746,-1351.25	0/1:195:154,41:154:5463:41:1441:-70.3162,0,-324.859	0/1:276:149,127:149:5332:127:4377:-309.37,0,-292.168	0/1:326:244,82:244:8703:82:2878:-160.341,0,-529.848	0/1:16:11,5:11:381:5:165:-10.3006,0,-25.5056	0/1:294:169,125:169:6046:125:4330:-295.652,0,-343.745	0/1:64:50,14:50:1777:14:496:-25.6033,0,-128.071	0/0:42:39,3:39:1389:3:108:0,-2.67913,-92.3883	0/1:197:164,33:164:5876:33:1165:-44.8489,0,-403.356	0/1:55:30,25:30:1072:25:868:-60.9284,0,-61.2333	0/0:18:18,0:18:644:0:0:0,-5.41854,-51.7363	0/1:57:48,9:48:1712:9:313:-11.1699,0,-125.565	0/1:102:72,30:72:2569:30:1056:-64.0301,0,-161.367	0/1:229:136,93:136:4854:93:3293:-225.09,0,-270.313	0/0:11:11,0:11:381:0:0:0,-3.31133,-30.1911	0/1:344:282,62:282:10120:62:2189:-92.7057,0,-695.78	0/1:313:240,73:240:8601:73:2554:-134.259,0,-542.468	0/1:56:33,23:33:1188:23:820:-56.6532,0,-78.4731	0/1:197:168,29:168:6017:29:1021:-32.5238,0,-411.109	0/1:234:146,88:146:5225:88:3064:-203.021,0,-296.309	0/1:120:77,43:77:2738:43:1525:-100.282,0,-194.538	0/1:48:33,15:33:1188:15:532:-32.4123,0,-73.213	0/1:183:129,54:129:4632:54:1852:-109.757,0,-271.965	0/1:208:165,43:165:5909:43:1534:-74.7164,0,-362.55	0/1:41:23,18:23:820:18:625:-43.6956,0,-53.8984	0/1:305:190,115:190:6801:115:4019:-266.072,0,-400.969	0/1:82:41,41:41:1472:41:1456:-104.101,0,-87.9998	0/1:297:193,104:193:6864:104:3664:-236.894,0,-369.355	0/1:297:207,90:207:7364:90:3043:-183.207,0,-486.251	0/1:185:159,26:159:5697:26:920:-26.536,0,-405.446	0/1:146:63,83:63:2264:83:2929:-216.54,0,-136.399	0/1:58:52,6:52:1860:6:208:-1.40925,0,-122.437	0/0:360:332,28:332:11887:28:988:0,-20.1153,-812.32	0/1:209:173,36:173:6178:36:1254:-48.9778,0,-427.736	0/1:498:344,154:344:12260:154:5473:-339.353,0,-736.493	0/1:213:160,53:160:5724:53:1892:-104.862,0,-371.177	0/1:112:73,39:73:2612:39:1384:-89.2257,0,-178.236	0/1:89:41,48:41:1451:48:1712:-125.779,0,-78.9142	0/1:274:237,37:237:8492:37:1308:-34.3624,0,-581.865	0/1:58:14,44:14:504:44:1576:-122.713,0,-22.5396	0/1:151:119,32:119:4252:32:1144:-55.7751,0,-280.137	0/1:168:133,35:133:4780:35:1236:-59.6517,0,-317.088	0/1:70:53,17:53:1904:17:596:-31.9591,0,-122.961	0/1:146:123,23:123:4403:23:824:-30.0162,0,-309.765	0/1:36:26,10:26:932:10:360:-21.3288,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chr05	1855278	.	GAAA	GAAG,TAAG	182619	PASS	AB=0.485978,0.510944;ABP=8.0038,6.05214;AC=140,48;AF=0.744681,0.255319;AN=188;AO=5151,1517;CIGAR=3M1X,1X2M1X;DP=6690;DPB=6690;DPRA=14.5217,0.861588;EPP=15.9207,65.5364;EPPR=3.0103;GTI=0;LEN=1,4;MEANALT=1.73913,2.17308;MQM=59.5479,54.5465;MQMR=60;NS=94;NUMALT=2;ODDS=0.711773;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=183364,53373;QR=72;RO=2;RPL=2488,654;RPP=15.9207,65.5364;RPPR=3.0103;RPR=2663,863;RUN=1,1;SAF=5151,1517;SAP=11188.3,3297.13;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,8,14:0:0:8,14:288,490:-63.3195,-39.8154,-37.4071,-23.8592,0,-19.6447	1/2:75:0,38,37:0:0:38,37:1354,1301:-216.299,-105.989,-94.5498,-110.664,0,-99.5257	1/1:67:0,67,0:0:0:67,0:2388,0:-215.153,-20.169,0,-215.153,-20.169,-215.153	1/1:96:0,94,1:0:0:94,1:3369,36:-303.048,-28.2968,0,-300.113,-25.3617,-299.812	1/2:36:0,25,11:0:0:25,11:896,388:-104.981,-31.9003,-24.3746,-73.4346,0,-70.1233	1/2:33:0,8,25:0:0:8,25:288,881:-95.2175,-71.7159,-69.3077,-23.8592,0,-16.3334	1/2:110:0,50,60:0:0:50,60:1773,2099:-315.258,-170.877,-155.825,-144.733,0,-126.672	1/1:107:0,107,0:0:0:107,0:3840,0:-345.341,-32.2102,0,-345.341,-32.2102,-345.341	1/2:91:0,34,57:0:0:34,57:1224,2002:-260.892,-161.96,-151.725,-99.2852,0,-82.1265	1/1:92:0,91,1:0:0:91,1:3152,36:-283.518,-27.3937,0,-280.582,-24.0991,-280.281	1/1:42:0,42,0:0:0:42,0:1512,0:-136.361,-12.6433,0,-136.361,-12.6433,-136.361	1/1:72:0,72,0:0:0:72,0:2539,0:-228.732,-21.6742,0,-228.732,-21.6742,-228.732	1/2:94:0,51,43:0:0:51,43:1821,1464:-267.118,-118.657,-103.304,-148.809,0,-135.864	1/1:89:0,89,0:0:0:89,0:3189,0:-287.218,-26.7917,0,-287.218,-26.7917,-287.218	1/1:69:1,67,0:1:36:67,0:2412,0:-213.393,-17.1917,0,-213.694,-20.169,-216.631	1/1:54:0,54,0:0:0:54,0:1908,0:-171.989,-16.2556,0,-171.989,-16.2556,-171.989	1/1:67:0,67,0:0:0:67,0:2408,0:-216.976,-20.169,0,-216.976,-20.169,-216.976	1/1:85:0,85,0:0:0:85,0:3048,0:-274.367,-25.5876,0,-274.367,-25.5876,-274.367	1/1:62:0,62,0:0:0:62,0:2224,0:-200.4,-18.6639,0,-200.4,-18.6639,-200.4	1/2:75:0,26,48:0:0:26,48:921,1670:-210.743,-135.717,-127.89,-75.1572,0,-60.7078	1/2:122:0,65,57:0:0:65,57:2294,2000:-349.542,-162.757,-143.19,-187.136,0,-169.977	1/2:67:0,23,44:0:0:23,44:805,1565:-193.24,-127.748,-120.824,-65.8438,0,-52.5985	1/2:42:0,28,14:0:0:28,14:1004,501:-122.984,-41.0966,-32.6678,-82.2447,0,-78.0303	1/1:97:0,89,8:0:0:89,8:3181,279:-286.142,-26.7917,0,-263.483,-3.78347,-261.074	1/1:42:0,42,0:0:0:42,0:1504,0:-135.525,-12.6433,0,-135.525,-12.6433,-135.525	1/1:222:0,222,0:0:0:222,0:7897,0:-710.169,-66.8287,0,-710.169,-66.8287,-710.169	1/2:137:0,61,76:0:0:61,76:2165,2696:-396.046,-219.655,-201.292,-176.746,0,-153.868	1/1:40:0,40,0:0:0:40,0:1440,0:-129.86,-12.0412,0,-129.86,-12.0412,-129.86	1/2:140:0,73,67:0:0:73,67:2596,2341:-401.671,-190.114,-168.139,-211.909,0,-191.74	1/2:95:0,50,45:0:0:50,45:1800,1606:-277.71,-130.973,-115.921,-147.095,0,-133.549	1/2:68:0,30,38:0:0:30,38:1072,1316:-194.594,-107.19,-98.1592,-87.7556,0,-76.3165	1/2:5:0,3,2:0:0:3,2:108,71:-14.9468,-6.13129,-5.2282,-9.17208,0,-8.57002	1/1:4:0,4,0:0:0:4,0:144,0:-13.3089,-1.20412,0,-13.3089,-1.20412,-13.3089	1/2:3:0,1,2:0:0:1,2:36,72:-9.14675,-6.21747,-5.91644,-3.2882,0,-2.68614	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:6:0,3,3:0:0:3,3:104,107:-17.5041,-9.05546,-8.15237,-8.79971,0,-7.89662	1/1:193:0,191,0:0:0:191,0:6806,0:-611.961,-57.4967,0,-611.961,-57.4967,-611.961	1/1:157:0,155,0:0:0:155,0:5441,0:-489.412,-46.6597,0,-489.412,-46.6597,-489.412	1/1:68:0,67,0:0:0:67,0:2377,0:-213.658,-20.169,0,-213.658,-20.169,-213.658	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:83:0,83,0:0:0:83,0:2988,0:-269.12,-24.9855,0,-269.12,-24.9855,-269.12	1/2:56:0,32,24:0:0:32,24:1131,850:-161.491,-69.3938,-59.7608,-92.4504,0,-85.2256	1/1:100:0,100,0:0:0:100,0:3565,0:-320.804,-30.103,0,-320.804,-30.103,-320.804	1/1:74:0,74,0:0:0:74,0:2652,0:-238.827,-22.2762,0,-238.827,-22.2762,-238.827	1/2:58:0,23,35:0:0:23,35:816,1221:-165.89,-99.4041,-92.4804,-66.838,0,-56.302	1/2:108:0,54,53:0:0:54,53:1932,1851:-307.993,-150.447,-134.192,-157.675,0,-141.72	1/1:67:0,66,1:0:0:66,1:2334,36:-208.844,-19.868,0,-205.915,-16.5798,-205.614	1/2:120:0,63,56:0:0:63,56:2260,1958:-343.266,-159.009,-140.045,-184.358,0,-167.5	1/1:82:0,82,0:0:0:82,0:2906,0:-261.769,-24.6845,0,-261.769,-24.6845,-261.769	1/1:77:0,77,0:0:0:77,0:2756,0:-248.115,-23.1793,0,-248.115,-23.1793,-248.115	1/1:141:0,141,0:0:0:141,0:5045,0:-454.191,-42.4452,0,-454.191,-42.4452,-454.191	2/2:8:0,0,8:0:0:0,8:0,265:-24.1597,-24.1597,-24.1597,-2.40824,-2.40824,0	1/1:77:0,77,0:0:0:77,0:2724,0:-245.129,-23.1793,0,-245.129,-23.1793,-245.129	1/2:21:0,13,8:0:0:13,8:464,288:-61.6773,-23.8518,-19.9384,-38.1841,0,-35.7759	1/2:23:0,11,12:0:0:11,12:387,431:-66.8458,-35.4214,-32.1101,-31.7788,0,-28.1664	1/2:66:0,30,35:0:0:30,35:1080,1201:-184.3,-96.1776,-87.1467,-88.1892,0,-77.6531	1/1:19:0,19,0:0:0:19,0:684,0:-61.8856,-5.71957,0,-61.8856,-5.71957,-61.8856	1/1:3:0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chr05	1863382	.	T	A	17433.7	PASS	AB=0.418116;ABP=163.75;AC=45;AF=0.239362;AN=188;AO=1159;CIGAR=1X;DP=6342;DPB=6342;DPRA=1.02306;EPP=2519.75;EPPR=11255.6;GTI=2;LEN=1;MEANALT=1.02041;MQM=53.8913;MQMR=51.7634;NS=94;NUMALT=1;ODDS=2.71409;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41411;QR=184133;RO=5182;RPL=0;RPP=2519.75;RPPR=11255.6;RPR=1159;RUN=1;SAF=0;SAP=2519.75;SAR=1159;SRF=0;SRP=11255.6;SRR=5182;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:19,27:19:684:27:955:-70.543,0,-46.7534	0/1:42:18,24:18:640:24:855:-64.4322,0,-44.9503	0/0:59:59,0:59:2089:0:0:0,-17.7608,-186.45	0/0:97:97,0:97:3420:0:0:0,-29.1999,-306.481	0/1:51:24,27:24:845:27:964:-71.2657,0,-60.1852	0/1:74:45,29:45:1593:29:1031:-70.3651,0,-120.49	0/1:66:31,35:31:1096:35:1256:-93.277,0,-78.6938	0/0:156:156,0:156:5557:0:0:0,-46.9607,-495.679	0/1:71:49,22:49:1734:22:783:-49.2271,0,-133.846	0/0:102:102,0:102:3607:0:0:0,-30.7051,-323.281	0/0:32:32,0:32:1144:0:0:0,-9.63296,-102.958	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.069	0/1:28:13,15:13:445:15:540:-40.2019,0,-31.7546	0/0:50:50,0:50:1796:0:0:0,-15.0515,-160.681	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.7707	0/0:21:21,0:21:741:0:0:0,-6.32163,-66.8476	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.2718	0/0:27:27,0:27:960:0:0:0,-8.12781,-85.1929	0/0:12:12,0:12:409:0:0:0,-3.61236,-36.6961	0/1:81:58,23:58:2046:23:818:-49.4801,0,-159.605	0/1:158:94,64:94:3357:64:2272:-155.719,0,-253.43	0/1:85:39,46:39:1396:46:1652:-122.694,0,-99.9533	0/1:141:90,51:90:3175:51:1824:-121.687,0,-242.132	0/0:82:81,1:81:2889:1:36:0,-21.0913,-255.373	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.191	0/0:314:313,1:313:11085:1:36:0,-90.9261,-990.875	0/1:140:88,52:88:3114:52:1872:-126.197,0,-237.066	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.6039	0/1:114:74,40:74:2629:40:1436:-94.9248,0,-201.223	0/1:163:87,75:87:3071:75:2672:-188.89,0,-225.445	0/1:81:42,39:42:1474:39:1392:-100.961,0,-108.02	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.48741	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.6159	0/1:9:3,6:3:108:6:216:-17.0315,0,-7.31128	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.497	0/1:4:1,3:1:36:3:108:-8.84572,0,-2.37465	0/0:110:110,0:110:3921:0:0:0,-33.1133,-352.299	0/0:231:231,0:231:8229:0:0:0,-69.5379,-736.571	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.4503	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/0:79:77,2:77:2730:2:72:0,-17.0229,-238.369	0/1:9:3,6:3:108:6:208:-16.3274,0,-7.34057	0/0:166:166,0:166:5892:0:0:0,-49.971,-525.521	0/0:36:36,0:36:1288:0:0:0,-10.8371,-115.918	0/1:30:12,18:12:428:18:644:-49.2188,0,-29.7751	0/1:106:56,50:56:2008:50:1781:-128.474,0,-147.935	0/0:113:113,0:113:3988:0:0:0,-34.0164,-353.809	0/1:95:60,35:60:2107:35:1248:-83.7323,0,-160.508	0/0:97:97,0:97:3450:0:0:0,-29.1999,-307.723	0/0:90:90,0:90:3171:0:0:0,-27.0927,-284.998	0/0:156:156,0:156:5574:0:0:0,-46.9607,-500.763	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/0:107:106,1:106:3785:1:36:0,-28.621,-334.902	0/1:69:49,20:49:1748:20:712:-43.4374,0,-136.528	0/1:11:7,4:7:244:4:144:-9.94808,0,-18.8845	0/1:64:39,25:39:1373:25:900:-61.8073,0,-103.805	0/0:65:65,0:65:2287:0:0:0,-19.5669,-205.463	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59568	0/1:29:12,17:12:432:17:612:-46.6638,0,-30.4585	0/1:55:29,26:29:991:26:932:-67.3997,0,-72.483	0/0:78:78,0:78:2796:0:0:0,-23.4803,-250.438	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/1:105:68,37:68:2406:37:1320:-87.3879,0,-183.98	0/1:163:111,52:111:3946:52:1860:-116.564,0,-305.427	0/1:82:52,30:52:1860:30:1059:-70.5644,0,-142.179	0/1:25:15,10:15:540:10:348:-23.9871,0,-41.3378	0/0:158:158,0:158:5601:0:0:0,-47.5627,-501.797	0/1:17:8,9:8:288:9:324:-24.2823,0,-20.9035	0/1:4:3,1:3:108:1:36:-2.38905,0,-8.65753	0/0:41:41,0:41:1468:0:0:0,-12.3422,-131.301	0/1:67:31,36:31:1108:36:1288:-95.7706,0,-79.7302	0/1:17:11,6:11:396:6:216:-14.6587,0,-30.8142	0/0:102:102,0:102:3619:0:0:0,-30.7051,-323.391	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.281	0/0:235:235,0:235:8401:0:0:0,-70.742,-752.173	0/0:63:63,0:63:2230:0:0:0,-18.9649,-200.537	0/1:108:78,30:78:2740:30:1067:-63.5913,0,-212.005	0/0:49:49,0:49:1760:0:0:0,-14.7505,-157.419	0/1:11:1,10:1:36:10:360:-26.9444,0,-0.267437	0/1:51:32,19:32:1148:19:684:-46.3776,0,-87.5858	0/1:39:29,10:29:1040:10:360:-20.7327,0,-80.7709	0/0:150:150,0:150:5342:0:0:0,-45.1545,-479.246	0/1:60:35,25:35:1248:25:891:-62.3858,0,-94.4074	0/0:42:42,0:42:1500:0:0:0,-12.6433,-133.801	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.237	0/1:53:34,19:34:1204:19:684:-45.8774,0,-91.33	0/1:26:11,15:11:396:15:540:-40.9811,0,-27.6133	0/1:44:16,28:16:576:28:999:-75.9102,0,-38.1312	0/0:43:43,0:43:1540:0:0:0,-12.9443,-136.697	0/0:20:20,0:20:712:0:0:0,-6.0206,-63.9795	0/1:39:20,19:20:716:19:684:-50.0553,0,-52.8592	0/1:23:6,17:6:208:17:612:-48.3633,0,-12.1115	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.073	0/0:53:53,0:53:1891:0:0:0,-15.9546,-169.858
chr05	1919321	.	T	C	214612	PASS	AB=0.487579;ABP=11.1021;AC=139;AF=0.739362;AN=188;AO=9970;CIGAR=1X;DP=13100;DPB=13100;DPRA=70.4194;EPP=21048.8;EPPR=6556.37;GTI=4;LEN=1;MEANALT=1.05376;MQM=59.868;MQMR=59.9875;NS=94;NUMALT=1;ODDS=1.16426;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=356263;QR=112061;RO=3125;RPL=9900;RPP=21048.8;RPPR=6556.37;RPR=70;RUN=1;SAF=0;SAP=21652.6;SAR=9970;SRF=0;SRP=6788.86;SRR=3125;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:25,37:25:892:37:1323:-100.708,0,-61.9358	0/1:292:150,142:150:5388:142:5078:-369.257,0,-397.148	1/1:199:0,198:0:0:198:7044:-633.506,-59.6039,0	1/1:141:1,140:1:36:140:5011:-446.43,-38.847,0	0/1:122:68,54:68:2436:54:1940:-138.15,0,-182.77	0/1:157:68,89:68:2448:89:3157:-237.019,0,-173.313	0/1:166:80,86:80:2876:86:3050:-224.725,0,-209.105	1/1:212:0,212:0:0:212:7574:-681.676,-63.8184,0	0/1:155:53,102:53:1904:102:3655:-282.423,0,-124.978	1/1:160:0,160:0:0:160:5732:-515.995,-48.1648,0	1/1:78:0,78:0:0:78:2804:-252.571,-23.4803,0	1/1:104:0,104:0:0:104:3740:-336.793,-31.3071,0	0/1:89:45,44:45:1612:44:1576:-115.34,0,-118.578	1/1:117:0,117:0:0:117:4200:-378.18,-35.2205,0	1/1:88:0,88:0:0:88:3152:-282.629,-26.4906,0	1/1:90:0,90:0:0:90:3222:-290.201,-27.0927,0	1/1:148:0,148:0:0:148:5317:-478.65,-44.5524,0	1/1:59:0,59:0:0:59:2108:-189.985,-17.7608,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:273:152,121:152:5468:121:4288:-303.907,0,-410.063	0/1:163:82,81:82:2944:81:2888:-211.086,0,-216.126	0/1:143:79,64:79:2802:64:2304:-164.556,0,-209.37	0/1:117:69,48:69:2484:48:1720:-119.865,0,-188.592	1/1:167:14,153:14:500:153:5466:-446.513,-4.93583,0	1/1:88:1,87:1:36:87:3118:-277.237,-22.8924,0	1/1:433:0,433:0:0:433:15451:-1390.22,-130.346,0	0/1:274:114,160:114:4076:160:5707:-431.265,0,-284.545	1/1:47:0,47:0:0:47:1683:-151.756,-14.1484,0	0/1:301:156,145:156:5593:145:5212:-378.606,0,-412.879	0/1:209:115,94:115:4124:94:3334:-237.316,0,-308.428	0/1:231:111,120:111:3992:120:4280:-315.831,0,-289.93	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:315:0,315:0:0:315:11288:-1015.16,-94.8245,0	1/1:230:0,230:0:0:230:8216:-739.02,-69.2369,0	1/1:101:0,101:0:0:101:3609:-324.984,-30.404,0	1/1:12:0,12:0:0:12:424:-38.2665,-3.61236,0	1/1:232:5,227:5:176:227:8110:-713.637,-53.6539,0	0/1:50:28,22:28:1004:22:788:-56.1474,0,-75.6244	1/1:217:0,217:0:0:217:7800:-702.021,-65.3235,0	1/1:126:1,125:1:36:125:4456:-397.608,-34.3315,0	0/1:83:42,41:42:1508:41:1472:-107.791,0,-111.029	0/1:125:60,65:60:2152:65:2332:-172.51,0,-156.318	1/1:202:0,202:0:0:202:7227:-650.423,-60.8081,0	0/1:170:81,89:81:2912:89:3157:-233.149,0,-211.139	1/1:191:0,191:0:0:191:6829:-614.672,-57.4967,0	1/1:213:0,213:0:0:213:7664:-689.772,-64.1194,0	1/1:226:1,225:1:36:225:8042:-720.199,-64.4345,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:196:0,196:0:0:196:7014:-631.312,-59.0019,0	0/1:96:36,60:36:1292:60:2156:-165.408,0,-87.6849	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:108:56,52:56:2016:52:1841:-133.454,0,-149.202	1/1:78:0,78:0:0:78:2772:-249.72,-23.4803,0	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:158:78,80:78:2796:80:2842:-208.397,0,-204.317	1/1:184:1,183:1:36:183:6531:-584.268,-51.7912,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:289:144,145:144:5164:145:5208:-381.859,0,-377.902	0/1:307:186,120:186:6665:120:4289:-292.523,0,-507.45	0/1:66:35,31:35:1260:31:1112:-80.5234,0,-93.8375	0/1:82:34,48:34:1209:48:1708:-129.321,0,-84.4297	1/1:363:6,357:6:216:357:12743:-1126.9,-89.6435,0	0/1:171:107,63:107:3840:63:2245:-150.777,0,-294.174	0/1:53:32,21:32:1148:21:752:-52.0517,0,-87.6752	1/1:88:0,88:0:0:88:3152:-283.895,-26.4906,0	0/1:123:53,70:53:1904:70:2516:-189.647,0,-134.611	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	1/1:157:0,157:0:0:157:5602:-504.3,-47.2617,0	1/1:104:0,104:0:0:104:3694:-332.66,-31.3071,0	1/1:239:0,238:0:0:238:8446:-759.156,-71.6451,0	1/1:209:0,209:0:0:209:7448:-670.279,-62.9153,0	0/1:252:127,125:127:4549:125:4461:-325.715,0,-333.715	1/1:240:1,239:1:32:239:8493:-761.112,-69.0479,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:124:63,61:63:2256:61:2169:-158.147,0,-165.975	0/1:156:84,72:84:3024:72:2584:-185.845,0,-225.429	1/1:237:0,237:0:0:237:8457:-761.105,-71.3441,0	0/1:155:68,86:68:2414:86:3096:-232.143,0,-170.795	1/1:79:0,79:0:0:79:2834:-255.296,-23.7814,0	1/1:126:0,126:0:0:126:4468:-402.285,-37.9298,0	0/1:204:107,97:107:3836:97:3472:-250.725,0,-284.026	0/1:57:30,27:30:1057:27:972:-70.6365,0,-78.2803	0/1:108:67,41:67:2400:41:1475:-100.534,0,-183.746	1/1:98:0,98:0:0:98:3516:-316.646,-29.5009,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	0/1:159:91,68:91:3268:68:2411:-169.377,0,-246.476	0/1:118:81,37:81:2916:37:1328:-84.3007,0,-227.153	1/1:150:0,150:0:0:150:5334:-480.191,-45.1545,0	1/1:155:1,154:1:36:154:5498:-491.314,-43.0614,0
chr05	1919330	.	C	T	215055	PASS	AB=0.491291;ABP=7.01928;AC=139;AF=0.739362;AN=188;AO=10114;CIGAR=1X;DP=13250;DPB=13250;DPRA=71.2258;EPP=21965.3;EPPR=6806.23;GTI=4;LEN=1;MEANALT=1.03226;MQM=59.8563;MQMR=59.9876;NS=94;NUMALT=1;ODDS=1.6346;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=362455;QR=112024;RO=3133;RPL=10114;RPP=21965.3;RPPR=6806.23;RPR=0;RUN=1;SAF=0;SAP=21965.3;SAR=10114;SRF=0;SRP=6806.23;SRR=3133;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:25,38:25:900:38:1364:-104.095,0,-62.3561	0/1:294:152,142:152:5441:142:5112:-371.706,0,-401.314	1/1:201:0,201:0:0:201:7211:-648.973,-60.507,0	1/1:145:0,145:0:0:145:5212:-467.928,-43.6494,0	0/1:122:68,54:68:2440:54:1909:-135.357,0,-183.129	0/1:158:67,91:67:2408:91:3238:-244.004,0,-169.413	0/1:164:78,86:78:2796:86:3092:-229.04,0,-202.511	1/1:215:0,215:0:0:215:7706:-693.474,-64.7215,0	0/1:157:53,104:53:1893:104:3744:-289.823,0,-123.385	1/1:161:0,161:0:0:161:5754:-517.972,-48.4658,0	1/1:78:0,78:0:0:78:2782:-250.611,-23.4803,0	1/1:105:0,105:0:0:105:3780:-340.391,-31.6082,0	0/1:91:47,44:47:1673:44:1580:-115.097,0,-123.462	1/1:124:0,124:0:0:124:4445:-400.208,-37.3277,0	1/1:89:0,88:0:0:88:3168:-283.708,-26.4906,0	1/1:90:0,90:0:0:90:3221:-290.11,-27.0927,0	1/1:148:1,147:1:36:147:5257:-469.653,-40.9542,0	1/1:60:0,60:0:0:60:2160:-194.664,-18.0618,0	1/1:59:1,58:1:32:58:2088:-184.99,-14.5615,0	0/1:276:152,124:152:5434:124:4434:-316.134,0,-406.102	0/1:165:81,84:81:2885:84:3024:-222.713,0,-210.216	0/1:144:80,64:80:2857:64:2285:-162.544,0,-214.018	0/1:121:70,51:70:2482:51:1813:-127.025,0,-187.206	1/1:169:14,155:14:504:155:5568:-455.327,-5.17598,0	1/1:89:1,88:1:36:88:3149:-280.028,-23.1934,0	1/1:436:1,434:1:36:434:15550:-1395.2,-127.71,0	0/1:276:116,160:116:4153:160:5756:-435.068,0,-290.867	1/1:49:0,49:0:0:49:1756:-158.322,-14.7505,0	0/1:304:155,149:155:5568:149:5341:-389.307,0,-409.728	0/1:211:115,96:115:4124:96:3437:-245.979,0,-307.826	0/1:233:110,123:110:3922:123:4413:-327.191,0,-283.03	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:316:0,316:0:0:316:11341:-1020.55,-95.1255,0	1/1:234:0,234:0:0:234:8331:-749.735,-70.441,0	1/1:103:0,103:0:0:103:3689:-332.176,-31.0061,0	1/1:12:0,12:0:0:12:432:-38.7901,-3.61236,0	1/1:234:5,229:5:176:229:8142:-716.421,-54.256,0	0/1:51:29,22:29:1029:22:792:-56.2072,0,-77.5686	1/1:220:0,220:0:0:220:7908:-711.68,-66.2266,0	1/1:128:1,127:1:36:127:4549:-405.948,-34.9336,0	0/1:84:41,43:41:1472:43:1544:-113.943,0,-107.49	0/1:126:60,66:60:2141:66:2361:-174.816,0,-155.026	1/1:204:0,204:0:0:204:7306:-657.581,-61.4101,0	0/1:171:81,90:81:2870:90:3225:-238.965,0,-207.059	1/1:194:0,194:0:0:194:6953:-625.763,-58.3998,0	1/1:218:0,218:0:0:218:7799:-701.899,-65.6245,0	1/1:231:1,229:1:36:229:8232:-737.288,-65.9985,0	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	1/1:201:0,201:0:0:201:7232:-650.911,-60.507,0	0/1:100:38,62:38:1349:62:2232:-171.041,0,-91.6053	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:109:57,52:57:2033:52:1864:-135.22,0,-150.428	1/1:80:0,80:0:0:80:2865:-258.083,-24.0824,0	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:159:78,81:78:2793:81:2914:-214.574,0,-203.745	1/1:188:1,187:1:36:187:6721:-601.357,-52.9954,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:291:144,147:144:5172:147:5231:-383.326,0,-378.018	0/1:313:189,124:189:6766:124:4464:-306.516,0,-514.787	0/1:67:35,32:35:1252:32:1137:-82.468,0,-92.8161	0/1:84:35,49:35:1252:49:1764:-133.757,0,-87.6986	1/1:368:7,361:7:252:361:12894:-1137.24,-87.9098,0	0/1:171:107,64:107:3806:64:2296:-155.425,0,-291.223	0/1:53:32,21:32:1152:21:756:-52.4126,0,-88.0356	1/1:91:0,91:0:0:91:3272:-294.69,-27.3937,0	0/1:124:53,71:53:1904:71:2556:-192.944,0,-134.31	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	1/1:161:0,161:0:0:161:5784:-520.64,-48.4658,0	1/1:105:0,105:0:0:105:3772:-339.676,-31.6082,0	1/1:247:0,247:0:0:247:8867:-796.621,-74.3544,0	1/1:213:0,213:0:0:213:7619:-685.654,-64.1194,0	0/1:252:126,126:126:4479:126:4487:-327.953,0,-327.417	1/1:242:1,241:1:36:241:8642:-773.919,-69.251,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:124:62,62:62:2202:62:2213:-162.105,0,-161.114	0/1:155:82,73:82:2914:73:2601:-187.675,0,-215.833	1/1:239:0,239:0:0:239:8561:-770.308,-71.9462,0	0/1:154:69,85:69:2480:85:3037:-227.195,0,-177.094	1/1:77:0,77:0:0:77:2757:-248.367,-23.1793,0	1/1:132:0,132:0:0:132:4703:-423.398,-39.736,0	0/1:205:108,97:108:3868:97:3486:-252.01,0,-286.604	0/1:57:31,26:31:1101:26:936:-67.398,0,-82.2397	0/1:107:65,42:65:2325:42:1512:-104.164,0,-177.298	1/1:98:0,98:0:0:98:3520:-317.002,-29.5009,0	1/1:85:0,85:0:0:85:3026:-272.568,-25.5876,0	0/1:162:90,72:90:3236:72:2573:-183.01,0,-242.694	0/1:118:81,37:81:2912:37:1324:-83.9406,0,-226.793	1/1:151:0,151:0:0:151:5432:-489,-45.4555,0	1/1:154:1,153:1:36:153:5508:-492.196,-42.7603,0
chr05	1992654	.	A	T	94225.5	PASS	AB=0.498972;ABP=3.08621;AC=48;AF=0.255319;AN=188;AO=4154;CIGAR=1X;DP=17532;DPB=17532;DPRA=0.937141;EPP=9023.31;EPPR=29029.1;GTI=1;LEN=1;MEANALT=1.11864;MQM=59.9945;MQMR=59.9912;NS=94;NUMALT=1;ODDS=2.87848;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148056;QR=473519;RO=13367;RPL=1947;RPP=38.3477;RPPR=3.06894;RPR=2207;RUN=1;SAF=1947;SAP=38.3477;SAR=2207;SRF=6674;SRP=3.06894;SRR=6693;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:129:61,68:61:2159:68:2432:-180.301,0,-155.744	0/1:188:101,87:101:3608:87:3120:-224.433,0,-268.333	0/0:292:291,1:291:10295:1:36:0,-84.3025,-922.887	0/0:410:410,0:410:14503:0:0:0,-123.422,-1305.04	0/1:207:102,105:102:3620:105:3745:-274.936,0,-263.691	0/1:76:42,33:42:1479:33:1176:-83.2108,0,-110.467	0/1:166:81,85:81:2858:85:3035:-223.408,0,-207.488	0/0:325:325,0:325:11500:0:0:0,-97.8347,-1034.89	0/1:185:94,91:94:3354:91:3216:-233.972,0,-246.386	0/0:199:198,0:198:6988:0:0:0,-59.6039,-628.779	0/0:112:112,0:112:3960:0:0:0,-33.7154,-356.593	0/0:181:181,0:181:6353:0:0:0,-54.4864,-571.87	0/1:140:65,75:65:2324:75:2670:-198.401,0,-167.276	0/0:134:133,1:133:4696:1:32:0,-37.1387,-419.606	0/0:122:122,0:122:4324:0:0:0,-36.7257,-389.338	0/0:134:134,0:134:4766:0:0:0,-40.338,-429.097	0/0:148:148,0:148:5267:0:0:0,-44.5524,-474.169	0/0:94:94,0:94:3334:0:0:0,-28.2968,-300.279	0/0:71:71,0:71:2496:0:0:0,-21.3731,-224.892	0/1:486:251,235:251:8933:235:8404:-610.063,0,-657.657	0/1:232:115,117:115:4048:117:4131:-302.139,0,-294.673	0/1:337:127,210:127:4484:210:7433:-567.57,0,-302.286	0/1:104:60,44:60:2140:44:1572:-110.464,0,-161.561	0/0:158:145,13:145:5154:13:468:0,-5.10309,-420.768	0/0:186:186,0:186:6601:0:0:0,-55.9916,-594.176	0/0:471:469,0:469:16629:0:0:0,-141.183,-1495.92	0/1:456:224,232:224:7956:232:8263:-606.412,0,-578.797	0/0:71:71,0:71:2519:0:0:0,-21.3731,-226.962	0/1:547:289,258:289:10274:258:9220:-665.108,0,-759.929	0/1:269:159,110:159:5658:110:3915:-271.567,0,-428.363	0/1:173:98,74:98:3471:74:2626:-184.448,0,-260.468	0/1:19:16,3:16:558:3:108:-4.3556,0,-44.8269	0/0:39:38,1:38:1346:1:36:0,-8.14189,-117.84	0/1:14:7,6:7:248:6:212:-15.1525,0,-18.3917	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/1:64:34,30:34:1220:30:1061:-76.5334,0,-90.8409	0/0:383:383,0:383:13542:0:0:0,-115.294,-1218.59	0/0:308:306,2:306:10835:2:72:0,-85.8805,-968.234	0/0:116:116,0:116:4110:0:0:0,-34.9195,-370.088	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2163	0/0:310:305,5:305:10814:5:180:0,-76.7672,-956.623	0/1:76:33,42:33:1159:42:1487:-111.187,0,-81.679	0/0:286:286,0:286:10134:0:0:0,-86.0946,-912.004	0/0:158:158,0:158:5591:0:0:0,-47.5627,-503.317	0/1:119:70,49:70:2473:49:1739:-120.97,0,-187.001	0/1:151:86,65:86:3041:65:2336:-165.043,0,-228.465	0/0:298:297,1:297:10549:1:36:0,-86.1087,-945.726	0/1:283:148,135:148:5271:135:4844:-350.921,0,-389.337	0/0:162:161,1:161:5699:1:36:0,-45.1686,-509.437	0/0:275:275,0:275:9706:0:0:0,-82.7832,-873.507	0/0:219:219,0:219:7758:0:0:0,-65.9256,-698.257	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/0:314:314,0:314:11134:0:0:0,-94.5234,-1001.96	0/1:59:44,15:44:1560:15:536:-30.814,0,-122.931	0/1:24:10,14:10:356:14:495:-37.6583,0,-25.1565	0/1:235:130,105:130:4614:105:3727:-264.891,0,-344.685	0/0:71:71,0:71:2514:0:0:0,-21.3731,-226.512	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:34:15,19:15:536:19:671:-50.4739,0,-38.3398	0/1:87:45,42:45:1599:42:1504:-109.465,0,-118.01	0/0:219:217,2:217:7693:2:72:0,-59.0888,-685.576	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/1:497:220,277:220:7782:277:9877:-739.26,0,-550.805	0/1:385:201,184:201:7167:184:6577:-476.115,0,-529.193	0/1:158:80,78:80:2792:78:2769:-201.888,0,-203.96	0/1:174:90,84:90:3196:84:2985:-216.503,0,-235.486	0/0:296:296,0:296:10497:0:0:0,-89.1049,-944.653	0/1:197:53,144:53:1882:144:5159:-405.147,0,-110.354	0/1:49:25,24:25:900:24:847:-61.7983,0,-66.5705	0/0:101:101,0:101:3551:0:0:0,-30.404,-319.803	0/1:136:74,62:74:2590:62:2216:-158.765,0,-192.408	0/1:41:16,25:16:558:25:892:-68.2575,0,-38.2042	0/0:221:219,1:219:7777:1:32:0,-63.3672,-696.748	0/0:185:185,0:185:6552:0:0:0,-55.6905,-589.764	0/0:210:210,0:210:7420:0:0:0,-63.2163,-667.85	0/0:315:315,0:315:11174:0:0:0,-94.8244,-1005.56	0/1:312:163,149:163:5767:149:5328:-385.733,0,-425.229	0/0:232:232,0:232:8275:0:0:0,-69.839,-744.336	0/1:24:6,18:6:208:18:644:-51.0659,0,-11.8344	0/1:214:107,107:107:3785:107:3824:-279.937,0,-276.43	0/1:242:135,107:135:4815:107:3799:-269.259,0,-360.657	0/0:328:327,1:327:11526:1:36:0,-95.1396,-1033.63	0/1:155:75,80:75:2672:80:2825:-207.829,0,-194.067	0/0:145:145,0:145:5111:0:0:0,-43.6493,-460.136	0/0:181:181,0:181:6369:0:0:0,-54.4864,-573.31	0/1:277:137,139:137:4857:139:4976:-364.544,0,-353.837	0/1:65:38,27:38:1347:27:968:-67.8704,0,-101.963	0/1:152:73,78:73:2590:78:2791:-205.614,0,-187.533	0/0:152:152,0:152:5368:0:0:0,-45.7566,-483.258	0/0:92:92,0:92:3255:0:0:0,-27.6948,-293.171	0/1:142:66,76:66:2339:76:2695:-200.049,0,-168.023	0/1:143:50,93:50:1779:93:3306:-254.712,0,-117.345	0/0:273:273,0:273:9671:0:0:0,-82.1812,-870.35	0/0:235:234,0:234:8268:0:0:0,-70.441,-743.9
chr05	1997752	.	A	G	132514	PASS	AB=0.514547;ABP=9.83359;AC=135;AF=0.725806;AN=186;AO=6245;CIGAR=1X;DP=8068;DPB=8068;DPRA=44.7889;EPP=13563.9;EPPR=3955.09;GTI=4;LEN=1;MEANALT=1.02222;MQM=59.6599;MQMR=59.9901;NS=93;NUMALT=1;ODDS=1.15584;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223445;QR=65220;RO=1820;RPL=1;RPP=13555.2;RPPR=3955.09;RPR=6244;RUN=1;SAF=1;SAP=13555.2;SAR=6244;SRF=0;SRP=3955.09;SRR=1820;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:17,25:17:612:25:900:-68.6778,0,-42.7702	0/1:71:46,24:46:1648:24:855:-55.9822,0,-127.323	1/1:166:0,166:0:0:166:5938:-534.481,-49.971,0	1/1:310:0,310:0:0:310:11120:-1000.4,-93.3193,0	0/1:51:20,31:20:716:31:1099:-83.8623,0,-49.4152	0/1:43:19,24:19:684:24:849:-63.7835,0,-48.946	0/1:64:27,37:27:959:37:1323:-100.101,0,-67.3595	1/1:158:1,157:1:36:157:5580:-498.46,-43.9645,0	0/1:99:47,52:47:1692:52:1872:-138.933,0,-122.765	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	1/1:24:0,24:0:0:24:860:-77.7195,-7.22472,0	1/1:78:0,78:0:0:78:2791:-251.397,-23.4803,0	0/1:79:44,35:44:1584:35:1251:-89.1047,0,-119.056	1/1:53:0,53:0:0:53:1900:-170.41,-15.9546,0	1/1:74:0,74:0:0:74:2645:-238.288,-22.2762,0	1/1:49:0,49:0:0:49:1734:-156.298,-14.7505,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:20:0,20:0:0:20:703:-63.5935,-6.0206,0	0/1:156:56,100:56:2016:100:3573:-274.796,0,-134.752	0/1:141:81,60:81:2916:60:2114:-148.063,0,-220.229	0/1:164:104,60:104:3724:60:2160:-145.273,0,-285.992	0/1:91:47,44:47:1669:44:1571:-114.281,0,-123.102	1/1:99:3,96:3:108:96:3415:-297.465,-19.7268,0	1/1:75:0,75:0:0:75:2677:-241.164,-22.5773,0	1/1:301:0,301:0:0:301:10738:-966.238,-90.61,0	0/1:161:73,88:73:2616:88:3152:-235.413,0,-187.222	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:221:69,152:69:2480:152:5435:-422.305,0,-156.925	0/1:170:70,100:70:2507:100:3588:-271.79,0,-174.703	0/1:130:66,64:66:2357:64:2276:-165.937,0,-173.253	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:170:0,170:0:0:170:6057:-545.171,-51.1751,0	1/1:163:1,162:1:36:162:5795:-517.999,-45.4696,0	1/1:31:0,31:0:0:31:1116:-100.743,-9.33193,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:86:4,82:4:144:82:2948:-252.226,-12.575,0	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2796	1/1:136:0,136:0:0:136:4877:-439.046,-40.9401,0	1/1:45:0,45:0:0:45:1612:-145.345,-13.5464,0	0/1:59:34,25:34:1205:25:900:-63.4738,0,-90.9931	0/1:173:104,69:104:3723:69:2476:-170.965,0,-283.191	1/1:147:0,147:0:0:147:5242:-470.718,-44.2514,0	0/1:167:61,106:61:2187:106:3793:-291.166,0,-146.823	1/1:94:0,94:0:0:94:3368:-303.331,-28.2968,0	1/1:96:1,95:1:36:95:3420:-304.395,-25.3006,0	1/1:190:0,190:0:0:190:6787:-610.879,-57.1957,0	0/1:10:2,8:2:72:8:288:-23.2547,0,-3.82642	1/1:56:0,56:0:0:56:2012:-181.345,-16.8577,0	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:120:65,55:65:2336:55:1976:-141.977,0,-174.376	1/1:62:0,62:0:0:62:2211:-199.221,-18.6639,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:60:25,35:25:881:35:1245:-94.2909,0,-61.5441	1/1:83:0,83:0:0:83:2980:-268.413,-24.9855,0	.:.:.:.:.:.:.:.	0/1:182:65,117:65:2321:117:4195:-322.876,0,-154.361	0/1:168:99,69:99:3552:69:2480:-172.878,0,-269.315	0/1:74:36,38:36:1281:38:1360:-100.275,0,-93.3151	0/1:68:25,43:25:896:43:1548:-119.138,0,-60.4903	1/1:184:0,182:0:0:182:6487:-583.524,-54.7875,0	0/1:150:101,49:101:3602:49:1756:-113.169,0,-279.229	0/1:15:6,9:6:212:9:324:-24.9904,0,-14.9093	1/1:27:0,27:0:0:27:972:-87.6075,-8.12781,0	0/1:44:24,20:24:860:20:720:-51.8816,0,-64.4765	0/1:11:2,9:2:72:9:324:-26.1922,0,-3.52539	1/1:91:0,91:0:0:91:3253:-292.887,-27.3937,0	1/1:131:0,131:0:0:131:4683:-421.594,-39.4349,0	1/1:140:0,140:0:0:140:5023:-451.574,-42.1442,0	1/1:132:2,130:2:72:130:4648:-411.632,-32.8992,0	0/1:88:51,37:51:1832:37:1328:-93.3316,0,-138.67	1/1:76:0,76:0:0:76:2732:-246.101,-22.8783,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:100:48,52:48:1724:52:1872:-138.647,0,-125.342	0/1:104:38,66:38:1368:66:2350:-180.254,0,-92.1137	1/1:304:1,303:1:36:303:10840:-971.126,-87.9148,0	0/1:64:33,31:33:1184:31:1115:-81.3916,0,-87.6024	1/1:45:0,45:0:0:45:1610:-145.156,-13.5464,0	1/1:32:0,32:0:0:32:1152:-103.989,-9.63296,0	0/1:108:46,62:46:1652:62:2228:-168.272,0,-116.457	0/1:20:9,11:9:324:11:392:-29.5709,0,-23.4853	0/1:58:33,25:33:1188:25:897:-63.5711,0,-89.7689	1/1:49:0,49:0:0:49:1760:-158.676,-14.7505,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:44:18,26:18:648:26:917:-69.5768,0,-45.4066	0/1:59:39,20:39:1400:20:720:-47.3657,0,-108.538	1/1:86:0,86:0:0:86:3092:-278.487,-25.8886,0	1/1:98:0,98:0:0:98:3501:-315.084,-29.5009,0
chr05	1997761	.	CGTT	TGTA,CGTA	175682	PASS	AB=0.516806,0.478892;ABP=12.1335,17.4025;AC=135,51;AF=0.725806,0.274194;AN=186;AO=6284,1803;CIGAR=1X2M1X,3M1X;DP=8115;DPB=8114.75;DPRA=45.05,1.02923;EPP=13354.8,3866.23;EPPR=5.18177;GTI=4;LEN=4,1;MEANALT=1.86667,2.22807;MQM=59.6666,59.9989;MQMR=60;NS=93;NUMALT=2;ODDS=0.46066;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=223113,64632;QR=25;RO=1;RPL=6251,1797;RPP=13363.4,3866.23;RPPR=5.18177;RPR=33,6;RUN=1,1;SAF=1,0;SAP=13639.9,3918.18;SAR=6283,1803;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,25,17:0:0:25,17:884,608:-121.931,-49.9345,-42.4088,-72.3521,0,-67.2346	1/2:70:1,24,45:1:25:24,45:849,1607:-198.023,-129.174,-123.896,-67.306,0,-55.7043	1/1:166:0,162,2:0:0:162,2:5761,72:-518.235,-48.7669,0,-512.36,-42.8621,-511.758	1/1:311:0,310,0:0:0:310,0:11024,0:-991.474,-93.3193,0,-991.474,-93.3193,-991.474	1/2:51:0,31,20:0:0:31,20:1094,708:-147.104,-58.025,-48.6931,-89.4319,0,-83.4113	1/2:44:0,25,19:0:0:25,19:877,684:-127.535,-56.1708,-48.645,-71.7196,0,-66	1/2:63:0,37,26:0:0:37,26:1291,932:-181.366,-76.3721,-65.234,-105.348,0,-97.521	1/1:162:0,161,1:0:0:161,1:5643,36:-507.141,-48.4658,0,-504.203,-45.1686,-503.902	1/2:101:0,53,47:0:0:53,47:1864,1688:-289.476,-137.758,-121.803,-151.773,0,-137.625	1/1:96:0,96,0:0:0:96,0:3425,0:-308.464,-28.8989,0,-308.464,-28.8989,-308.464	1/1:24:0,24,0:0:0:24,0:857,0:-77.4488,-7.22472,0,-77.4488,-7.22472,-77.4488	1/1:78:0,78,0:0:0:78,0:2772,0:-249.695,-23.4803,0,-249.695,-23.4803,-249.695	1/2:77:0,35,42:0:0:35,42:1249,1508:-225.184,-123.371,-112.835,-102.171,0,-89.5274	1/1:53:0,53,0:0:0:53,0:1870,0:-168.332,-15.9546,0,-168.332,-15.9546,-168.332	1/1:74:0,74,0:0:0:74,0:2648,0:-238.557,-22.2762,0,-238.557,-22.2762,-238.557	1/1:49:0,49,0:0:0:49,0:1751,0:-157.799,-14.7505,0,-157.799,-14.7505,-157.799	1/1:33:0,32,0:0:0:32,0:1140,0:-102.549,-9.63296,0,-102.549,-9.63296,-102.549	1/1:7:0,7,0:0:0:7,0:251,0:-22.9379,-2.10721,0,-22.9379,-2.10721,-22.9379	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:156:0,100,55:0:0:100,55:3517,1980:-447.844,-161.583,-131.48,-286.283,0,-269.727	1/2:143:0,62,81:0:0:62,81:2182,2898:-414.282,-236.672,-218.008,-177.964,0,-153.581	1/2:165:0,61,104:0:0:61,104:2177,3732:-482.228,-304.773,-286.41,-177.813,0,-146.506	1/2:91:0,44,47:0:0:44,47:1561,1677:-264.243,-137.067,-123.821,-127.532,0,-113.384	1/1:99:0,96,3:0:0:96,3:3420,103:-307.654,-28.8989,0,-299.291,-20.1924,-298.388	1/1:76:0,76,0:0:0:76,0:2711,0:-244.22,-22.8783,0,-244.22,-22.8783,-244.22	1/1:306:0,306,0:0:0:306,0:10824,0:-973.991,-92.1152,0,-973.991,-92.1152,-973.991	1/2:160:0,88,72:0:0:88,72:3131,2588:-466.647,-211.494,-185.004,-255.51,0,-233.836	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:225:0,152,72:0:0:152,72:5420,2592:-652.926,-211.494,-165.738,-441.43,0,-419.756	1/2:169:0,100,69:0:0:100,69:3557,2469:-491.439,-201.691,-171.588,-290.105,0,-269.334	1/2:130:0,62,66:0:0:62,66:2209,2360:-372.375,-192.432,-173.768,-179.941,0,-160.073	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:7:0,7,0:0:0:7,0:243,0:-22.208,-2.10721,0,-22.208,-2.10721,-22.208	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:170:0,169,0:0:0:169,0:5986,0:-538.517,-50.8741,0,-538.517,-50.8741,-538.517	1/1:164:0,163,1:0:0:163,1:5755,36:-517.653,-49.0679,0,-514.716,-45.7706,-514.415	1/1:31:0,31,0:0:0:31,0:1110,0:-100.202,-9.33193,0,-100.202,-9.33193,-100.202	1/1:5:0,5,0:0:0:5,0:174,0:-16.0013,-1.50515,0,-16.0013,-1.50515,-16.0013	1/1:86:0,82,4:0:0:82,4:2919,144:-262.573,-24.6845,0,-250.824,-12.575,-249.619	1/2:18:0,4,14:0:0:4,14:144,504:-53.2333,-41.4837,-40.2796,-12.1095,0,-7.89508	1/1:138:0,138,0:0:0:138,0:4904,0:-441.466,-41.5421,0,-441.466,-41.5421,-441.466	1/1:46:0,46,0:0:0:46,0:1653,0:-149.033,-13.8474,0,-149.033,-13.8474,-149.033	1/2:58:0,25,32:0:0:25,32:884,1148:-165.588,-93.6371,-86.1113,-71.947,0,-62.314	1/2:170:0,69,98:0:0:69,98:2438,3507:-484.561,-286.021,-265.25,-198.576,0,-169.075	1/1:149:0,149,0:0:0:149,0:5303,0:-476.947,-44.8535,0,-476.947,-44.8535,-476.947	1/2:170:0,108,61:0:0:108,61:3833,2188:-490.69,-178.463,-145.952,-312.225,0,-293.862	1/1:95:0,95,0:0:0:95,0:3369,0:-303.423,-28.5979,0,-303.423,-28.5979,-303.423	1/1:98:0,97,1:0:0:97,1:3457,36:-310.967,-29.1999,0,-308.03,-25.9027,-307.729	1/1:190:0,190,0:0:0:190,0:6771,0:-609.444,-57.1957,0,-609.444,-57.1957,-609.444	1/2:9:0,8,1:0:0:8,1:281,36:-26.1597,-3.29724,-0.889005,-23.2213,0,-22.9203	1/1:56:0,56,0:0:0:56,0:1996,0:-179.905,-16.8577,0,-179.905,-16.8577,-179.905	1/2:26:0,11,15:0:0:11,15:394,536:-76.192,-44.0594,-40.748,-32.4902,0,-27.9748	1/2:9:0,4,5:0:0:4,5:137,180:-26.1601,-15.0469,-13.8428,-11.4633,0,-9.95812	1/2:120:0,56,64:0:0:56,64:1980,2300:-349.243,-187.995,-171.137,-161.604,0,-142.338	1/1:62:0,62,0:0:0:62,0:2207,0:-198.866,-18.6639,0,-198.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chr05	2004530	.	C	T	30524.3	PASS	AB=0.614236;ABP=389.983;AC=50;AF=0.265957;AN=188;AO=2115;CIGAR=1X;DP=6652;DPB=6652;DPRA=1.1162;EPP=4595.67;EPPR=9850.64;GTI=5;LEN=1;MEANALT=1;MQM=34.5608;MQMR=47.4304;NS=94;NUMALT=1;ODDS=0.200004;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75735;QR=162378;RO=4535;RPL=2115;RPP=4595.67;RPPR=9850.64;RPR=0;RUN=1;SAF=0;SAP=4595.67;SAR=2115;SRF=0;SRP=9850.64;SRR=4535;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:14,18:14:496:18:648:-43.2794,0,-35.1179	0/1:98:27,71:27:972:71:2556:-175.812,0,-57.7755	0/0:67:67,0:67:2412:0:0:0,-20.169,-216.005	0/0:108:106,2:106:3795:2:72:0,-26.4548,-332.318	0/1:20:8,12:8:288:12:432:-29.2512,0,-19.4682	0/1:49:18,31:18:644:31:1116:-76.0167,0,-42.6092	0/1:92:31,61:31:1112:61:2157:-144.302,0,-71.4632	0/0:74:71,3:71:2531:3:100:0,-13.8014,-217.347	0/1:62:25,37:25:896:37:1328:-89.3967,0,-61.0884	0/0:51:51,0:51:1802:0:0:0,-15.3525,-160.34	0/0:75:74,0:74:2643:0:0:0,-22.2762,-235.676	0/0:56:56,0:56:2012:0:0:0,-16.8577,-179.957	0/1:68:39,29:39:1396:29:1044:-63.2834,0,-104.47	0/0:140:140,0:140:5007:0:0:0,-42.1442,-444.462	0/0:73:73,0:73:2616:0:0:0,-21.9752,-233.38	0/0:58:58,0:58:2076:0:0:0,-17.4597,-185.22	0/0:83:83,0:83:2979:0:0:0,-24.9855,-264.999	0/0:66:66,0:66:2364:0:0:0,-19.868,-210.767	0/0:52:52,0:52:1872:0:0:0,-15.6536,-167.237	0/1:87:31,56:31:1112:56:2016:-134.687,0,-72.3726	0/1:123:29,94:29:1044:94:3347:-234.098,0,-56.5488	0/1:21:5,16:5:180:16:572:-41.0301,0,-10.1407	0/1:73:31,42:31:1096:42:1489:-96.3973,0,-75.0315	0/1:95:82,13:82:2932:13:468:-8.82882,0,-232.762	0/0:43:43,0:43:1528:0:0:0,-12.9443,-136.768	0/0:142:138,4:138:4918:4:144:0,-30.5399,-428.017	0/1:111:36,75:36:1288:75:2691:-185.375,0,-80.5614	0/0:36:36,0:36:1292:0:0:0,-10.8371,-115.333	0/1:187:69,118:69:2472:118:4223:-287.009,0,-164.397	0/1:148:45,103:45:1616:103:3677:-252.401,0,-99.8474	0/1:145:52,93:52:1860:93:3329:-221.447,0,-120.107	0/1:3:1,2:1:36:2:72:-5.26461,0,-2.67034	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.0958	1/1:3:0,3:0:0:3:108:-9.08924,-0.90309,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.3298	0/1:4:1,3:1:36:3:108:-7.93447,0,-2.37465	0/0:149:148,1:148:5299:1:36:0,-41.5544,-470.554	0/0:96:96,0:96:3425:0:0:0,-28.8989,-305.943	0/0:62:62,0:62:2232:0:0:0,-18.6639,-199.409	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.42453	0/0:70:70,0:70:2512:0:0:0,-21.0721,-224.297	0/1:38:19,19:19:680:19:684:-44.3948,0,-49.3799	0/0:67:67,0:67:2400:0:0:0,-20.169,-214.514	0/0:56:56,0:56:2012:0:0:0,-16.8577,-178.762	0/1:57:22,35:22:792:35:1260:-83.3659,0,-53.7689	0/1:104:42,62:42:1504:62:2220:-150.592,0,-103.301	0/0:55:55,0:55:1972:0:0:0,-16.5566,-176.824	0/1:95:35,60:35:1260:60:2137:-141.996,0,-84.1134	0/0:72:72,0:72:2572:0:0:0,-21.6742,-227.832	0/0:69:69,0:69:2461:0:0:0,-20.7711,-218.756	0/0:96:96,0:96:3433:0:0:0,-28.8989,-305.683	0/1:11:4,7:4:144:7:252:-17.0895,0,-9.892	0/0:61:61,0:61:2188:0:0:0,-18.3628,-195.967	0/1:24:4,20:4:144:20:720:-52.0895,0,-6.01672	0/1:31:17,14:17:612:14:504:-31.9422,0,-45.785	0/1:81:30,51:30:1076:51:1817:-122.198,0,-71.8666	0/0:48:48,0:48:1720:0:0:0,-14.4494,-153.387	0/1:8:3,5:3:108:5:180:-12.5623,0,-7.61231	0/1:27:7,20:7:252:20:716:-51.3633,0,-14.4187	0/1:88:33,55:33:1175:55:1980:-133.116,0,-78.02	0/0:128:127,1:127:4564:1:36:0,-35.3442,-402.609	0/1:11:3,8:3:108:8:288:-19.9583,0,-6.68193	0/1:127:50,77:50:1788:77:2768:-188.15,0,-121.673	0/1:101:43,58:43:1540:58:2084:-135.601,0,-106.713	0/1:67:19,48:19:680:48:1724:-118.444,0,-40.9531	0/1:40:11,29:11:392:29:1044:-70.7593,0,-22.9365	0/0:74:72,2:72:2580:2:72:0,-16.2197,-222.318	0/1:76:19,57:19:680:57:2031:-137.745,0,-37.5695	0/1:53:24,29:24:864:29:1040:-66.662,0,-60.7404	0/0:72:72,0:72:2571:0:0:0,-21.6742,-229.985	0/1:113:47,66:47:1688:66:2353:-158.877,0,-116.29	0/1:24:9,15:9:324:15:525:-35.1218,0,-21.3322	0/0:45:43,2:43:1548:2:57:0,-8.48348,-133.732	0/0:46:46,0:46:1652:0:0:0,-13.8474,-147.866	0/0:130:130,0:130:4644:0:0:0,-39.1339,-415.04	0/0:64:64,0:64:2296:0:0:0,-19.2659,-204.357	0/1:100:38,62:38:1349:62:2224:-151.408,0,-90.9701	0/0:71:71,0:71:2543:0:0:0,-21.3731,-226.903	0/1:14:2,12:2:72:12:428:-30.9666,0,-2.58524	0/1:68:19,49:19:684:49:1741:-118.959,0,-40.6908	0/1:54:18,36:18:644:36:1296:-88.0361,0,-41.4079	0/0:91:90,0:90:3228:0:0:0,-27.0927,-286.665	0/1:116:56,60:56:1989:60:2156:-134.977,0,-141.962	0/0:92:92,0:92:3308:0:0:0,-27.6948,-295.165	0/0:96:96,0:96:3439:0:0:0,-28.8989,-307.03	0/1:123:53,70:53:1896:70:2516:-164.143,0,-130.464	0/1:40:21,19:21:752:19:684:-43.8406,0,-55.3908	0/1:92:31,61:31:1112:61:2196:-150.319,0,-71.0865	0/0:57:57,0:57:2035:0:0:0,-17.1587,-180.9	0/0:91:91,0:91:3240:0:0:0,-27.3937,-286.886	0/1:145:72,73:72:2584:73:2613:-168.876,0,-186.111	0/1:68:22,46:22:792:46:1656:-111.922,0,-49.8235	0/0:47:47,0:47:1692:0:0:0,-14.1484,-149.715	0/0:90:90,0:90:3236:0:0:0,-27.0927,-287.657
chr05	2038525	.	G	A	23331.5	PASS	AB=0.487483;ABP=6.92439;AC=45;AF=0.239362;AN=188;AO=1414;CIGAR=1X;DP=6022;DPB=6022;DPRA=1.25755;EPP=3056.13;EPPR=9937.59;GTI=1;LEN=1;MEANALT=1.05882;MQM=59.9908;MQMR=59.9874;NS=94;NUMALT=1;ODDS=3.07949;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50454;QR=163905;RO=4603;RPL=1412;RPP=3056.13;RPPR=9937.59;RPR=2;RUN=1;SAF=0;SAP=3073.47;SAR=1414;SRF=0;SRP=9998.3;SRR=4603;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:18,16:18:639:16:576:-41.94,0,-47.6032	0/1:50:28,22:28:996:22:783:-55.7414,0,-74.9034	0/0:94:93,1:93:3319:1:36:0,-24.6985,-295.33	0/0:143:142,1:142:5025:1:36:0,-39.449,-448.694	0/1:40:34,6:34:1220:6:216:-7.74931,0,-98.0656	0/1:35:16,19:16:572:19:684:-51.3543,0,-41.2774	0/1:63:25,38:25:891:38:1351:-102.924,0,-61.5439	0/0:97:97,0:97:3471:0:0:0,-29.1999,-312.601	0/1:85:34,50:34:1208:50:1800:-136.636,0,-83.3799	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.846	0/0:58:58,0:58:2035:0:0:0,-17.4597,-183.42	0/1:56:18,38:18:648:38:1347:-104.669,0,-41.7942	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/0:39:39,0:39:1374:0:0:0,-11.7402,-123.957	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:36:27,9:27:972:9:324:-18.6688,0,-76.9608	0/1:133:88,45:88:3122:45:1602:-104.433,0,-241.17	0/1:66:25,41:25:896:41:1464:-112.188,0,-61.0924	0/1:108:68,40:68:2385:40:1424:-95.9462,0,-182.393	0/0:60:58,2:58:2059:2:68:0,-11.6041,-179.123	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:212:211,1:211:7543:1:36:0,-60.2201,-675.313	0/1:164:84,80:84:2985:80:2864:-208.628,0,-219.513	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:171:88,83:88:3138:83:2972:-216.237,0,-231.169	0/1:111:64,47:64:2271:47:1679:-117.982,0,-171.238	0/1:126:71,55:71:2544:55:1972:-139.825,0,-191.281	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:27:26,1:26:923:1:36:0,-4.52953,-79.7885	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:131:131,0:131:4657:0:0:0,-39.4349,-419.293	0/0:97:97,0:97:3450:0:0:0,-29.1999,-310.713	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:62:62,0:62:2202:0:0:0,-18.6639,-198.254	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	0/0:119:119,0:119:4240:0:0:0,-35.8226,-381.777	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/1:66:33,33:33:1168:33:1180:-86.6392,0,-85.5592	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/1:101:44,57:44:1564:57:2032:-152.748,0,-110.648	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.664	0/0:82:81,0:81:2894:0:0:0,-24.3834,-260.375	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/1:49:15,34:15:540:34:1216:-94.9961,0,-34.1861	0/1:18:10,8:10:345:8:273:-19.4816,0,-25.9623	0/1:78:38,40:38:1341:40:1402:-102.995,0,-97.5075	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:33:17,16:17:595:16:572:-41.8794,0,-43.9427	0/1:79:36,43:36:1279:43:1525:-113.76,0,-91.6311	0/0:90:89,1:89:3170:1:36:0,-23.4944,-281.926	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:149:65,83:65:2311:83:2970:-222.621,0,-163.338	0/1:117:66,51:66:2343:51:1814:-128.319,0,-175.909	0/1:72:43,29:43:1531:29:1031:-71.4285,0,-116.408	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/0:153:153,0:153:5455:0:0:0,-46.0576,-491.08	0/1:85:24,61:24:864:61:2180:-170.879,0,-52.495	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:17:13,4:13:459:4:131:-6.99596,0,-36.5266	0/0:83:83,0:83:2959:0:0:0,-24.9855,-266.544	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.57	0/0:136:136,0:136:4847:0:0:0,-40.9401,-436.386	0/0:118:118,0:118:4210:0:0:0,-35.5215,-379.081	0/1:131:88,43:88:3142:43:1534:-98.9164,0,-243.57	0/0:101:98,3:98:3494:3:104:0,-20.7012,-304.968	0/1:28:12,16:12:432:16:572:-43.3846,0,-30.7924	0/1:59:23,36:23:820:36:1292:-98.823,0,-56.3617	0/1:55:29,26:29:1040:26:915:-66.1089,0,-77.3577	0/0:144:144,0:144:5113:0:0:0,-43.3483,-460.316	0/1:59:31,28:31:1086:28:1004:-72.9151,0,-80.2868	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:90:51,39:51:1816:39:1383:-97.6754,0,-136.629	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/0:30:30,0:30:1055:0:0:0,-9.0309,-95.26	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/1:102:47,53:47:1680:53:1897:-140.544,0,-121.024	0/1:45:15,30:15:527:30:1070:-83.0657,0,-34.2138	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.942
chr05	2038955	.	AGG	CGG,CGT	209665	PASS	AB=0.491847,0.504132;ABP=5.59502,3.6743;AC=140,48;AF=0.744681,0.255319;AN=188;AO=7476,2284;CIGAR=1X2M,1X1M1X;DP=9805;DPB=9805;DPRA=17.5609,0.917257;EPP=16132.9,4953.97;EPPR=27.4756;GTI=1;LEN=1,3;MEANALT=1.89247,2.30909;MQM=59.9972,59.662;MQMR=59.6667;NS=94;NUMALT=2;ODDS=0.767946;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=266155,80307;QR=436;RO=15;RPL=10,0;RPP=16150.2,4962.65;RPPR=27.4756;RPR=7466,2284;RUN=1,1;SAF=7474,2283;SAP=16219.6,4953.97;SAR=2,1;SRF=15;SRP=35.5824;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:62:0,45,17:0:0:45,17:1608,598:-180.141,-49.0307,-35.4844,-131.464,0,-126.346	1/2:122:0,55,67:0:0:55,67:1972,2307:-348.532,-187.686,-171.129,-161.198,0,-141.029	1/1:118:0,118,0:0:0:118,0:4211,0:-379.171,-35.5215,0,-379.171,-35.5215,-379.171	1/1:217:0,216,0:0:0:216,0:7710,0:-693.575,-65.0225,0,-693.575,-65.0225,-693.575	1/2:61:0,26,35:0:0:26,35:913,1222:-174.05,-99.7426,-91.9158,-74.6572,0,-64.1212	1/2:60:0,24,36:0:0:24,36:844,1276:-173.006,-104.304,-97.0797,-69.0542,0,-58.2171	1/2:206:0,106,100:0:0:106,100:3780,3492:-592.361,-284.223,-252.314,-308.49,0,-278.387	1/1:158:1,157,0:1:27:157,0:5559,0:-497.737,-44.863,0,-498.038,-47.2617,-500.166	1/2:168:0,86,81:0:0:86,81:3084,2847:-483.186,-231.642,-205.753,-251.539,0,-227.156	1/1:138:1,136,0:1:31:136,0:4842,0:-432.871,-38.4166,0,-433.172,-40.9401,-435.66	1/1:97:0,96,0:0:0:96,0:3407,0:-306.566,-28.8989,0,-306.566,-28.8989,-306.566	1/1:132:2,129,1:2:53:129,1:4572,36:-406.582,-34.7285,0,-404.247,-35.8638,-408.112	1/2:106:2,50,53:2:72:50,53:1779,1877:-291.429,-147.044,-137.868,-139.134,0,-129.055	1/1:98:0,98,0:0:0:98,0:3509,0:-316.02,-29.5009,0,-316.02,-29.5009,-316.02	1/1:65:0,65,0:0:0:65,0:2332,0:-210.14,-19.567,0,-210.14,-19.567,-210.14	1/1:101:0,101,0:0:0:101,0:3606,0:-324.746,-30.404,0,-324.746,-30.404,-324.746	1/1:88:0,87,0:0:0:87,0:3119,0:-280.684,-26.1896,0,-280.684,-26.1896,-280.684	1/1:70:0,70,0:0:0:70,0:2496,0:-224.893,-21.0721,0,-224.893,-21.0721,-224.893	1/1:61:0,61,0:0:0:61,0:2183,0:-196.735,-18.3628,0,-196.735,-18.3628,-196.735	1/2:240:0,126,112:0:0:126,112:4483,3984:-689.927,-324.571,-286.641,-365.362,0,-331.647	1/2:241:0,124,116:0:0:124,116:4416,4046:-688.975,-329.04,-291.713,-360.006,0,-325.086	1/2:109:0,26,83:0:0:26,83:899,2909:-310.107,-237.06,-229.233,-73.3936,0,-48.4081	1/2:124:0,72,52:0:0:72,52:2559,1824:-357.258,-148.725,-127.05,-208.886,0,-193.233	1/1:156:0,149,7:0:0:149,7:5332,234:-479.679,-44.8535,0,-460.736,-25.5752,-458.628	1/1:82:0,82,0:0:0:82,0:2911,0:-262.226,-24.6845,0,-262.226,-24.6845,-262.226	1/1:173:1,172,0:1:28:172,0:6115,0:-547.656,-49.2785,0,-547.957,-51.7772,-550.175	1/2:222:0,119,102:0:0:119,102:4235,3577:-636.212,-291.056,-255.234,-345.149,0,-314.444	1/1:51:0,51,0:0:0:51,0:1816,0:-163.721,-15.3525,0,-163.721,-15.3525,-163.721	1/2:267:0,143,124:0:0:143,124:5095,4354:-769.996,-354.703,-311.656,-415.646,0,-378.318	1/2:151:0,87,64:0:0:87,64:3124,2247:-438.068,-183.226,-157.036,-255.196,0,-235.93	1/2:151:0,83,67:0:0:83,67:2959,2373:-434.63,-193.426,-168.44,-241.327,0,-221.158	1/2:8:0,5,3:0:0:5,3:180,102:-23.3128,-8.61329,-7.10814,-15.0469,0,-14.1438	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	2/2:6:0,0,6:0:0:0,6:0,207:-18.9669,-18.9669,-18.9669,-1.80618,-1.80618,0	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/2:17:0,10,7:0:0:10,7:345,244:-48.1927,-20.1689,-17.1586,-28.3705,0,-26.2633	1/1:180:0,179,0:0:0:179,0:6412,0:-576.937,-53.8844,0,-576.937,-53.8844,-576.937	1/1:136:0,135,0:0:0:135,0:4782,0:-430.228,-40.6391,0,-430.228,-40.6391,-430.228	1/1:92:0,92,0:0:0:92,0:3300,0:-297.218,-27.6948,0,-297.218,-27.6948,-297.218	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:130:0,128,2:0:0:128,2:4530,63:-407.556,-38.5318,0,-402.491,-33.1507,-401.889	1/2:49:0,22,27:0:0:22,27:779,949:-141.051,-77.5948,-70.9722,-63.8094,0,-55.6816	1/1:150:0,147,2:0:0:147,2:5225,72:-470.057,-44.2514,0,-464.182,-38.3233,-463.58	1/1:98:0,98,0:0:0:98,0:3503,0:-315.48,-29.5009,0,-315.48,-29.5009,-315.48	1/2:91:0,38,53:0:0:38,53:1347,1838:-259.466,-149.727,-138.288,-110.09,0,-94.1357	1/2:104:1,49,54:1:36:49,54:1744,1927:-295.972,-154.136,-142.323,-139.197,0,-125.879	1/1:93:0,93,0:0:0:93,0:3332,0:-300.097,-27.9958,0,-300.097,-27.9958,-300.097	1/2:128:0,65,62:0:0:65,62:2316,2187:-366.918,-178.138,-158.571,-188.863,0,-170.199	1/1:109:0,109,0:0:0:109,0:3883,0:-349.666,-32.8123,0,-349.666,-32.8123,-349.666	1/1:96:0,93,1:0:0:93,1:3321,36:-298.76,-27.9958,0,-295.823,-25.0517,-295.522	1/1:195:2,193,0:2:44:193,0:6852,0:-612.574,-54.5211,0,-613.176,-58.0988,-616.532	1/2:11:0,3,8:0:0:3,8:104,286:-32.1275,-23.6772,-22.7742,-8.79971,0,-6.39147	1/1:120:0,120,0:0:0:120,0:4292,0:-386.458,-36.1236,0,-386.458,-36.1236,-386.458	1/2:47:0,28,19:0:0:28,19:1004,674:-137.157,-55.2658,-46.8369,-82.247,0,-76.5275	1/2:17:0,6,11:0:0:6,11:216,368:-47.763,-30.1295,-28.3233,-17.9843,0,-14.673	1/2:104:1,58,45:1:24:58,45:2061,1598:-296.104,-128.459,-112.856,-166.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chr05	2038966	.	T	G	37187.3	PASS	AB=0.495115;ABP=3.9226;AC=48;AF=0.255319;AN=188;AO=2203;CIGAR=1X;DP=9763;DPB=9763;DPRA=0.8764;EPP=4657.36;EPPR=15521.5;GTI=2;LEN=1;MEANALT=1.05556;MQM=59.754;MQMR=59.994;NS=94;NUMALT=1;ODDS=1.33051;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78490;QR=270437;RO=7549;RPL=14;RPP=4665.93;RPPR=15538.4;RPR=2189;RUN=1;SAF=2202;SAP=4778.08;SAR=1;SRF=7547;SRP=16378.1;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:46,15:46:1643:15:536:-30.212,0,-129.795	0/1:119:54,65:54:1932:65:2311:-172.409,0,-138.334	0/0:117:116,1:116:4159:1:36:0,-31.6222,-370.893	0/0:215:215,0:215:7689:0:0:0,-64.7214,-692.043	0/1:61:28,33:28:1008:33:1179:-88.0529,0,-72.6702	0/1:57:22,35:22:788:35:1240:-94.7454,0,-54.0861	0/1:205:107,98:107:3813:98:3485:-251.954,0,-281.656	0/0:159:158,0:158:5651:0:0:0,-47.5627,-508.35	0/1:166:86,80:86:3088:80:2846:-206.398,0,-228.176	0/0:139:139,0:139:4988:0:0:0,-41.8432,-449.064	0/0:99:99,0:99:3515:0:0:0,-29.802,-316.559	0/0:131:131,0:131:4680:0:0:0,-39.4349,-421.359	0/1:106:53,53:53:1904:53:1891:-138.555,0,-139.729	0/0:100:98,0:98:3511:0:0:0,-29.5009,-315.839	0/0:65:64,0:64:2300:0:0:0,-19.2659,-206.901	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:64:62,0:62:2228:0:0:0,-18.6639,-200.424	0/1:236:127,109:127:4564:109:3892:-279.05,0,-339.881	0/1:242:129,113:129:4607:113:4022:-289.23,0,-341.945	0/1:102:25,77:25:896:77:2730:-215.237,0,-50.2553	0/1:125:74,51:74:2660:51:1801:-124.721,0,-202.014	0/0:155:149,6:149:5325:6:203:0,-28.0594,-460.782	0/0:81:80,0:80:2868:0:0:0,-24.0824,-257.997	0/0:172:172,0:172:6184:0:0:0,-51.7772,-556.654	0/1:219:121,98:121:4312:98:3489:-248.289,0,-322.333	0/0:52:52,0:52:1857:0:0:0,-15.6536,-167.408	0/1:263:144,119:144:5168:119:4245:-303.052,0,-386.088	0/1:146:85,61:85:3048:61:2184:-152.876,0,-230.599	0/1:149:84,65:84:2994:65:2319:-164.115,0,-224.836	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:16:9,7:9:320:7:243:-17.3683,0,-24.3259	0/0:184:184,0:184:6597:0:0:0,-55.3895,-593.807	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:131:129,2:129:4628:2:72:0,-32.5982,-409.845	0/1:49:23,26:23:828:26:918:-68.1842,0,-60.0936	0/0:155:153,2:153:5484:2:72:0,-39.8229,-486.85	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/1:85:37,47:37:1320:47:1688:-126.554,0,-93.4557	0/1:101:51,50:51:1832:50:1775:-129.618,0,-134.757	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:126:65,61:65:2324:61:2188:-159.234,0,-171.49	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.553	0/0:98:97,1:97:3459:1:36:0,-25.9027,-307.925	0/0:199:199,0:199:7135:0:0:0,-59.905,-642.201	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:125:125,0:125:4477:0:0:0,-37.6287,-403.097	0/1:46:29,17:29:1040:17:608:-41.2028,0,-80.067	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/1:104:59,45:59:2116:45:1611:-113.968,0,-159.402	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:6:2,4:2:72:4:144:-11.5018,0,-5.03054	0/1:17:7,10:7:248:10:360:-27.6259,0,-17.5467	0/1:125:74,51:74:2656:51:1811:-125.641,0,-201.655	0/0:146:146,0:146:5243:0:0:0,-43.9504,-472.004	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:117:58,59:58:2084:59:2108:-154.762,0,-152.61	0/1:130:59,71:59:2124:71:2531:-188.891,0,-152.294	0/1:95:38,57:38:1368:57:2044:-155.631,0,-94.823	0/1:51:24,27:24:860:27:955:-70.91,0,-62.3693	0/0:150:146,4:146:5231:4:144:0,-31.8409,-457.613	0/1:63:22,41:22:784:41:1472:-113.808,0,-51.919	0/1:47:28,19:28:1000:19:671:-46.5658,0,-76.167	0/0:97:97,0:97:3471:0:0:0,-29.1999,-312.601	0/1:83:35,48:35:1260:48:1707:-128.929,0,-88.72	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	0/0:161:161,0:161:5742:0:0:0,-48.4658,-516.898	0/0:108:108,0:108:3888:0:0:0,-32.5112,-350.112	0/0:259:259,0:259:9283:0:0:0,-77.9668,-835.435	0/0:154:154,0:154:5532:0:0:0,-46.3586,-498	0/1:99:45,54:45:1607:54:1928:-143.993,0,-115.117	0/0:78:76,2:76:2732:2:72:0,-16.6436,-239.285	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:90:44,46:44:1571:46:1631:-119.967,0,-114.588	0/1:63:38,25:38:1364:25:882:-60.7315,0,-104.096	0/0:230:230,0:230:8238:0:0:0,-69.2369,-741.429	0/1:130:62,67:62:2205:67:2390:-176.116,0,-159.521	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.889	0/1:181:89,91:89:3177:91:3251:-238.251,0,-231.608	0/1:44:17,27:17:608:27:960:-73.471,0,-41.8067	0/0:104:103,0:103:3700:0:0:0,-31.0061,-332.881	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:82:82,0:82:2924:0:0:0,-24.6845,-263.393	0/1:114:63,51:63:2264:51:1819:-129.672,0,-169.705	0/1:87:23,64:23:815:64:2274:-178.664,0,-47.4812	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849
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chr05	2039035	.	T	C	187175	PASS	AB=0.46215;ABP=75.0089;AC=141;AF=0.75;AN=188;AO=8899;CIGAR=1X;DP=12033;DPB=12033;DPRA=0;EPP=19309.6;EPPR=6773.67;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9393;MQMR=60;NS=94;NUMALT=1;ODDS=2.50248;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317531;QR=112087;RO=3126;RPL=8897;RPP=19309.6;RPPR=6773.67;RPR=2;RUN=1;SAF=0;SAP=19326.9;SAR=8899;SRF=0;SRP=6791.03;SRR=3126;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:44,21:44:1580:21:747:-47.9874,0,-122.925	0/1:205:103,100:103:3662:100:3569:-259.948,0,-268.313	1/1:153:0,152:0:0:152:5436:-489.01,-45.7566,0	1/1:268:3,264:3:108:264:9440:-839.485,-70.6597,0	0/1:82:38,44:38:1353:44:1567:-116.636,0,-97.3839	0/1:91:42,49:42:1508:49:1749:-130.27,0,-108.621	0/1:245:133,112:133:4757:112:4008:-287.152,0,-354.534	1/1:217:0,217:0:0:217:7689:-692.047,-65.3235,0	0/1:124:74,50:74:2664:50:1777:-122.883,0,-202.677	1/1:136:0,135:0:0:135:4832:-434.625,-40.6391,0	1/1:103:0,103:0:0:103:3674:-330.846,-31.0061,0	1/1:116:0,115:0:0:115:4136:-372.062,-34.6185,0	0/1:75:42,33:42:1512:33:1184:-84.2911,0,-113.797	1/1:131:0,131:0:0:131:4667:-420.193,-39.4349,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:109:0,109:0:0:109:3878:-349.216,-32.8123,0	1/1:95:0,95:0:0:95:3399:-306.116,-28.5979,0	1/1:69:0,69:0:0:69:2454:-221.114,-20.7711,0	1/1:69:1,68:1:36:68:2392:-211.938,-17.1728,0	0/1:312:187,125:187:6690:125:4446:-306.384,0,-508.252	0/1:251:138,113:138:4944:113:4009:-285.441,0,-369.551	0/1:138:104,34:104:3736:34:1224:-68.9249,0,-294.897	0/1:177:96,81:96:3433:81:2912:-209.024,0,-255.899	0/1:152:20,132:20:716:132:4708:-378.12,0,-19.0112	1/1:89:0,89:0:0:89:3156:-284.135,-26.7917,0	1/1:293:3,290:3:108:290:10334:-919.628,-78.1266,0	0/1:213:116,97:116:4168:97:3433:-245.054,0,-311.182	1/1:22:1,21:1:36:21:752:-64.408,-3.02439,0	0/1:289:159,130:159:5716:130:4621:-329.055,0,-427.557	0/1:192:95,97:95:3401:97:3458:-253.526,0,-248.505	0/1:258:141,116:141:5064:116:4139:-294.968,0,-378.178	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	1/1:35:0,35:0:0:35:1252:-112.957,-10.5361,0	0/1:7:1,6:1:36:6:203:-16.494,0,-1.49106	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:35:22,13:22:792:13:464:-31.5615,0,-61.0696	1/1:246:0,246:0:0:246:8771:-789.38,-74.0534,0	1/1:202:0,202:0:0:202:7226:-650.395,-60.8081,0	1/1:108:0,108:0:0:108:3857:-347.309,-32.5112,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:205:4,201:4:144:201:7212:-635.814,-48.3975,0	0/1:38:22,16:22:788:16:568:-40.0118,0,-59.8057	1/1:181:0,181:0:0:181:6447:-580.289,-54.4864,0	1/1:170:0,170:0:0:170:6049:-544.515,-51.1751,0	0/1:77:34,43:34:1224:43:1519:-113.821,0,-87.2877	0/1:117:59,58:59:2105:58:2065:-150.899,0,-154.497	1/1:102:0,102:0:0:102:3660:-329.603,-30.7051,0	0/1:189:99,90:99:3552:90:3213:-232.497,0,-262.993	1/1:136:0,136:0:0:136:4834:-435.215,-40.9401,0	1/1:165:0,165:0:0:165:5882:-529.485,-49.67,0	1/1:134:0,134:0:0:134:4732:-426.035,-40.338,0	0/1:21:10,11:10:360:11:392:-29.2984,0,-26.4227	1/1:125:1,124:1:36:124:4452:-397.251,-34.0305,0	0/1:113:67,46:67:2408:46:1652:-114.952,0,-182.96	0/1:34:25,9:25:900:9:320:-18.9073,0,-71.086	0/1:188:81,107:81:2908:107:3828:-288.123,0,-205.361	1/1:97:0,97:0:0:97:3476:-313.049,-29.1999,0	1/1:23:1,22:1:36:22:792:-68.0074,-3.32542,0	0/1:27:13,14:13:468:14:491:-36.3933,0,-34.3318	0/1:139:65,74:65:2336:74:2646:-196.34,0,-168.656	1/1:127:0,127:0:0:127:4553:-409.927,-38.2308,0	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	0/1:188:94,94:94:3364:94:3352:-245.302,0,-246.383	0/1:226:141,85:141:5057:85:3032:-205.073,0,-387.239	0/1:125:56,69:56:1997:69:2464:-184.256,0,-142.373	0/1:79:46,33:46:1648:33:1179:-82.6365,0,-124.827	1/1:258:3,255:3:108:255:9077:-806.831,-67.5906,0	0/1:77:53,24:53:1908:24:864:-54.9033,0,-148.818	0/1:52:30,22:30:1080:22:784:-55.2304,0,-81.8597	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	0/1:70:36,34:36:1292:34:1221:-89.1179,0,-95.5117	0/1:15:9,6:9:320:6:212:-14.9093,0,-24.6269	1/1:172:0,171:0:0:171:6081:-547.034,-51.4761,0	1/1:77:0,77:0:0:77:2745:-247.29,-23.1793,0	1/1:275:0,275:0:0:275:9828:-884.435,-82.7833,0	1/1:215:0,215:0:0:215:7712:-694.111,-64.7215,0	0/1:127:68,59:68:2436:59:2109:-151.846,0,-181.264	1/1:165:0,165:0:0:165:5876:-528.948,-49.67,0	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/1:145:81,64:81:2900:64:2304:-163.971,0,-217.586	0/1:198:106,92:106:3804:92:3304:-237.974,0,-282.953	1/1:226:0,226:0:0:226:8085:-727.668,-68.0328,0	0/1:128:65,63:65:2336:63:2251:-164.093,0,-171.967	1/1:78:0,78:0:0:78:2788:-251.161,-23.4803,0	1/1:125:0,125:0:0:125:4432:-399.053,-37.6288,0	0/1:149:82,67:82:2940:67:2370:-168.584,0,-219.98	0/1:55:35,20:35:1256:20:708:-47.4889,0,-96.7886	1/1:146:0,146:0:0:146:5225:-470.375,-43.9504,0	1/1:105:0,105:0:0:105:3752:-337.88,-31.6082,0	1/1:105:0,105:0:0:105:3724:-335.362,-31.6082,0	0/1:154:85,69:85:3048:69:2460:-175.292,0,-228.191	0/1:86:62,24:62:2228:24:860:-51.8333,0,-174.895	1/1:101:0,101:0:0:101:3602:-324.386,-30.404,0	1/1:115:0,115:0:0:115:4116:-370.625,-34.6185,0
chr05	2039323	.	T	C	83803.6	PASS	AB=0.465409;ABP=29.4504;AC=141;AF=0.75;AN=188;AO=4013;CIGAR=1X;DP=5378;DPB=5378;DPRA=0;EPP=8717.13;EPPR=2964.9;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.988;MQMR=60;NS=94;NUMALT=1;ODDS=0.0832097;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142363;QR=48604;RO=1364;RPL=4011;RPP=8699.77;RPPR=2964.9;RPR=2;RUN=1;SAF=4011;SAP=8699.77;SAR=2;SRF=1364;SRP=2964.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:19,11:19:667:11:388:-26.2265,0,-51.3237	0/1:45:17,28:17:594:28:1008:-77.49,0,-40.2392	1/1:64:2,62:2:72:62:2212:-192.508,-12.4292,0	1/1:104:0,104:0:0:104:3671:-330.592,-31.3071,0	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:27:17,10:17:612:10:360:-24.6165,0,-47.2856	0/1:61:22,39:22:762:39:1396:-107.576,0,-50.5347	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	0/1:75:40,35:40:1432:35:1237:-89.055,0,-106.6	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	1/1:59:0,59:0:0:59:2062:-185.847,-17.7608,0	1/1:80:0,80:0:0:80:2835:-255.388,-24.0824,0	0/1:69:26,43:26:918:43:1528:-117.042,0,-62.1642	1/1:68:0,68:0:0:68:2400:-216.256,-20.47,0	1/1:46:0,46:0:0:46:1602:-144.465,-13.8474,0	1/1:58:0,58:0:0:58:2041:-183.96,-17.4597,0	1/1:31:0,31:0:0:31:1093:-98.6777,-9.33193,0	1/1:23:0,23:0:0:23:801:-72.4067,-6.92369,0	1/1:53:0,53:0:0:53:1886:-170.017,-15.9546,0	0/1:132:74,58:74:2660:58:2066:-146.474,0,-199.909	0/1:70:41,29:41:1464:29:1020:-71.0373,0,-110.984	0/1:65:49,15:49:1742:15:525:-28.0373,0,-137.526	0/1:51:26,25:26:932:25:881:-64.2533,0,-68.8463	1/1:33:1,32:1:36:32:1140:-99.3096,-6.33572,0	1/1:47:0,47:0:0:47:1663:-149.957,-14.1484,0	1/1:95:1,94:1:36:94:3375:-300.367,-24.9996,0	0/1:105:60,45:60:2144:45:1603:-112.951,0,-161.62	1/1:24:0,24:0:0:24:857:-77.4468,-7.22472,0	0/1:124:65,59:65:2332:59:2112:-153.021,0,-172.812	0/1:67:34,33:34:1220:33:1180:-86.339,0,-89.9378	0/1:50:21,29:21:756:29:1022:-77.2399,0,-53.3157	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:26:18,8:18:648:8:288:-18.4406,0,-50.8251	1/1:150:0,150:0:0:150:5262:-473.72,-45.1545,0	1/1:81:0,81:0:0:81:2875:-258.986,-24.3834,0	1/1:57:0,57:0:0:57:1999:-180.181,-17.1587,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:75:0,75:0:0:75:2649:-238.654,-22.5773,0	0/1:54:30,24:30:1059:24:851:-60.6538,0,-79.3648	1/1:72:0,72:0:0:72:2550:-229.748,-21.6742,0	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	0/1:38:21,17:21:739:17:612:-43.9743,0,-55.3932	0/1:45:22,23:22:788:23:807:-59.4028,0,-57.6984	1/1:67:0,67:0:0:67:2380:-214.456,-20.169,0	0/1:83:52,31:52:1864:31:1104:-74.6846,0,-143.054	1/1:49:0,49:0:0:49:1755:-158.233,-14.7505,0	1/1:60:0,60:0:0:60:2120:-191.064,-18.0618,0	1/1:68:0,68:0:0:68:2431:-219.046,-20.47,0	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	1/1:73:0,73:0:0:73:2569:-231.457,-21.9752,0	0/1:35:17,18:17:603:18:648:-48.1158,0,-44.0635	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/1:100:51,49:51:1798:49:1744:-127.141,0,-131.995	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:14:12,2:12:402:2:68:-2.24329,0,-32.2848	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:66:38,28:38:1364:28:1004:-70.8079,0,-103.193	1/1:98:0,98:0:0:98:3460:-311.609,-29.5009,0	0/1:15:6,9:6:212:9:315:-24.1718,0,-14.9093	0/1:93:60,33:60:2107:33:1180:-78.5123,0,-161.901	0/1:76:43,33:43:1539:33:1183:-83.9001,0,-115.924	0/1:32:22,10:22:792:10:342:-21.4761,0,-61.9727	0/1:47:20,27:20:712:27:963:-72.8375,0,-50.2582	1/1:97:0,97:0:0:97:3452:-310.892,-29.1999,0	0/1:57:38,19:38:1368:19:684:-44.7316,0,-106.262	0/1:53:25,28:25:888:28:984:-72.9169,0,-64.2844	1/1:38:0,38:0:0:38:1350:-121.799,-11.4391,0	0/1:36:19,17:19:684:17:612:-44.5764,0,-51.0532	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	1/1:78:0,78:0:0:78:2768:-249.352,-23.4803,0	1/1:72:0,72:0:0:72:2569:-231.46,-21.6742,0	1/1:69:0,69:0:0:69:2407:-216.881,-20.7711,0	1/1:87:0,87:0:0:87:3112:-280.307,-26.1896,0	0/1:92:36,56:36:1292:56:1972:-150.058,0,-88.889	1/1:49:0,49:0:0:49:1747:-157.514,-14.7505,0	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.6223	0/1:26:12,14:12:420:14:504:-37.8713,0,-30.3072	0/1:69:37,32:37:1332:32:1120:-80.3338,0,-99.4113	1/1:82:1,81:1:36:81:2900:-257.638,-21.0862,0	0/1:40:17,23:17:612:23:803:-60.5414,0,-43.3722	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:36:0,36:0:0:36:1263:-113.972,-10.8371,0	0/1:83:47,36:47:1675:36:1288:-91.2381,0,-126.051	0/1:28:13,15:13:459:15:536:-40.146,0,-33.2152	1/1:64:0,64:0:0:64:2247:-202.492,-19.2659,0	1/1:64:0,64:0:0:64:2256:-203.3,-19.2659,0	1/1:80:0,80:0:0:80:2847:-256.468,-24.0824,0	0/1:175:87,88:87:3094:88:3122:-228.527,0,-226.008	0/1:71:55,16:55:1942:16:572:-30.4403,0,-153.682	1/1:62:0,62:0:0:62:2178:-196.283,-18.6639,0	1/1:57:0,57:0:0:57:2028:-182.791,-17.1587,0
chr05	2039509	.	G	A	15014.8	PASS	AB=0.465396;ABP=23.7493;AC=49;AF=0.266304;AN=184;AO=956;CIGAR=1X;DP=4655;DPB=4655;DPRA=0.74735;EPP=2070.26;EPPR=8030.94;GTI=6;LEN=1;MEANALT=1.04082;MQM=59.8682;MQMR=59.9835;NS=92;NUMALT=1;ODDS=0.0516092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33886;QR=132077;RO=3697;RPL=955;RPP=2070.26;RPPR=8030.94;RPR=1;RUN=1;SAF=956;SAP=2078.94;SAR=0;SRF=3697;SRP=8030.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:50:24,26:24:864:26:921:-68.1553,0,-63.0311	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:22:17,5:17:612:5:180:-9.9294,0,-48.7908	0/1:17:7,10:7:237:10:360:-27.6268,0,-16.5415	0/1:69:34,35:34:1220:35:1235:-90.6824,0,-89.3357	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:32:22,10:22:775:10:356:-22.7483,0,-60.434	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/1:57:38,19:38:1360:19:684:-44.7316,0,-105.542	0/0:78:78,0:78:2758:0:0:0,-23.4803,-248.463	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.832	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.573	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:217:131,86:131:4688:86:3032:-207.699,0,-356.756	0/1:38:15,23:15:540:23:824:-63.0442,0,-37.4974	0/1:48:18,30:18:633:30:1061:-81.3499,0,-42.8456	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2702	0/0:98:98,0:98:3498:0:0:0,-29.5009,-315.03	0/1:77:43,34:43:1531:34:1212:-86.1372,0,-114.903	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.802	0/1:182:85,97:85:3043:97:3448:-255.421,0,-219.312	0/1:54:25,29:25:888:29:1025:-76.2939,0,-63.9834	0/1:40:21,19:21:744:19:675:-49.0366,0,-55.2408	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:3,2:3:108:2:57:-3.90816,0,-8.57002	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:9:0,8:0:0:8:288:-25.9076,-2.40824,0	0/0:178:178,0:178:6384:0:0:0,-53.5833,-574.647	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	.:.:.:.:.:.:.:.	0/0:52:50,2:50:1796:2:72:0,-8.81684,-155.086	0/1:51:30,21:30:1076:21:744:-51.9318,0,-81.8003	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:39:17,22:17:612:22:788:-59.5046,0,-43.6733	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	0/0:46:46,0:46:1638:0:0:0,-13.8474,-147.707	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4958	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:49:48,1:48:1728:1:28:0,-11.9507,-153.006	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:4:2,2:2:72:2:66:-5.06383,0,-5.6326	0/0:94:94,0:94:3369:0:0:0,-28.2968,-303.416	0/1:24:13,11:13:468:11:374:-26.7608,0,-35.2349	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:30:18,11:18:648:11:375:-24.9897,0,-49.5622	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.6947	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:44:12,32:12:432:32:1140:-89.6587,0,-25.9759	0/0:125:125,0:125:4469:0:0:0,-37.6287,-402.379	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:46:35,11:35:1252:11:392:-21.7727,0,-99.1377	0/1:77:43,34:43:1529:34:1209:-85.9358,0,-114.722	0/1:28:9,19:9:324:19:676:-52.7392,0,-21.077	0/1:19:13,6:13:453:6:216:-14.0686,0,-35.3801	0/0:20:19,1:19:669:1:36:0,-2.42232,-56.9357	0/1:25:7,18:7:252:18:644:-50.7648,0,-15.5032	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/1:72:36,36:36:1292:36:1269:-92.8375,0,-94.9096	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.652	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/0:118:118,0:118:4189:0:0:0,-35.5215,-377.189	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.517	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:56:33,23:33:1180:23:797:-55.1882,0,-89.6504	0/1:56:29,27:29:1025:27:926:-66.79,0,-75.703	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/1:72:47,25:47:1679:25:878:-57.6571,0,-129.722	0/0:67:67,0:67:2376:0:0:0,-20.169,-214.096	0/0:88:88,0:88:3137:0:0:0,-26.4906,-282.555	0/1:122:75,47:75:2680:47:1673:-114.13,0,-204.72	0/1:34:19,15:19:680:15:536:-38.3398,0,-51.2941	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.689	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.58	0/1:86:50,36:50:1773:36:1288:-90.335,0,-133.963	0/1:68:24,44:24:860:44:1573:-121.391,0,-57.2518	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.048
chr05	2040826	.	T	C	33727.8	PASS	AB=0.518401;ABP=14.1183;AC=46;AF=0.244681;AN=188;AO=1996;CIGAR=1X;DP=8194;DPB=8194;DPRA=1.14902;EPP=4302.6;EPPR=13346.9;GTI=1;LEN=1;MEANALT=1.0339;MQM=59.9744;MQMR=59.9897;NS=94;NUMALT=1;ODDS=2.52497;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71305;QR=220573;RO=6193;RPL=4;RPP=4302.6;RPPR=13346.9;RPR=1992;RUN=1;SAF=0;SAP=4337.27;SAR=1996;SRF=0;SRP=13450.9;SRR=6193;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:24,11:24:845:11:392:-25.084,0,-65.7861	0/1:165:91,74:91:3219:74:2660:-189.975,0,-240.252	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.843	0/0:218:217,0:217:7723:0:0:0,-65.3235,-694.744	0/1:71:38,33:38:1356:33:1176:-84.7746,0,-100.967	0/1:66:34,32:34:1205:32:1142:-83.2211,0,-88.8859	0/1:115:51,64:51:1797:64:2292:-171.923,0,-127.392	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/1:93:44,49:44:1580:49:1730:-127.986,0,-114.496	0/0:91:90,1:90:3228:1:36:0,-23.7955,-287.143	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:52:20,32:20:720:32:1148:-87.9763,0,-49.4752	0/0:71:70,1:70:2504:1:36:0,-17.7749,-222.014	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.081	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.871	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:192:98,94:98:3512:94:3378:-246.437,0,-258.492	0/1:149:49,100:49:1760:100:3571:-276.743,0,-113.83	0/1:96:29,67:29:1036:67:2408:-188.077,0,-64.655	0/1:83:45,38:45:1604:38:1362:-97.8949,0,-119.665	0/0:146:137,9:137:4880:9:324:0,-14.4445,-409.85	0/0:89:87,2:87:3112:2:72:0,-19.9549,-273.47	0/0:251:251,0:251:8964:0:0:0,-75.5585,-806.744	0/1:204:102,102:102:3664:102:3631:-264.807,0,-268.552	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:229:124,105:124:4397:105:3760:-269.664,0,-326.97	0/1:185:79,106:79:2825:106:3809:-287.315,0,-198.797	0/1:138:80,58:80:2819:58:2073:-145.297,0,-212.404	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:175:174,0:174:6208:0:0:0,-52.3792,-558.457	0/0:173:172,1:172:6110:1:36:0,-48.4799,-546.405	0/0:57:55,2:55:1968:2:72:0,-10.322,-170.558	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:189:186,3:186:6579:3:108:0,-46.8195,-582.121	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	0/0:122:121,1:121:4320:1:36:0,-33.1274,-385.379	0/0:91:89,2:89:3173:2:72:0,-20.557,-278.957	0/1:72:39,33:39:1400:33:1167:-83.6622,0,-104.625	0/1:90:46,44:46:1640:44:1580:-115.399,0,-120.796	0/0:129:128,0:128:4558:0:0:0,-38.5318,-410.174	0/1:121:60,61:60:2137:61:2196:-161.48,0,-156.172	0/0:77:77,0:77:2736:0:0:0,-23.1793,-246.484	0/0:107:106,1:106:3751:1:36:0,-28.6119,-334.19	0/0:115:115,0:115:4047:0:0:0,-34.6184,-364.419	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:128:128,0:128:4569:0:0:0,-38.5318,-411.375	0/1:33:20,13:20:712:13:468:-32.5257,0,-54.4727	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	0/1:103:43,59:43:1532:59:2106:-158.831,0,-107.196	0/0:52:52,0:52:1818:0:0:0,-15.6536,-163.897	0/1:6:3,3:3:108:3:93:-6.87055,0,-8.26899	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:58:32,26:32:1144:26:923:-65.927,0,-85.8098	0/0:66:65,1:65:2320:1:36:0,-16.2697,-205.462	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:195:98,97:98:3462:97:3477:-254.438,0,-253.092	0/1:208:101,107:101:3585:107:3790:-278.684,0,-260.114	0/1:75:39,36:39:1366:36:1272:-92.2029,0,-100.657	0/1:112:62,50:62:2224:50:1782:-126.945,0,-166.709	0/0:197:193,4:193:6882:4:144:0,-45.9917,-606.137	0/1:64:21,43:21:744:43:1531:-118.816,0,-48.0184	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/1:50:20,29:20:716:29:1040:-78.9489,0,-49.8002	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:106:105,1:105:3752:1:36:0,-28.3109,-334.282	0/0:171:171,0:171:6063:0:0:0,-51.4761,-545.771	0/0:178:178,0:178:6337:0:0:0,-53.5833,-570.422	0/1:70:34,36:34:1209:36:1292:-95.5117,0,-88.042	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:95:41,54:41:1441:54:1936:-145.919,0,-101.386	0/1:74:43,31:43:1525:31:1112:-78.1151,0,-115.265	0/0:183:183,0:183:6507:0:0:0,-55.0885,-585.714	0/1:88:45,43:45:1604:43:1532:-111.682,0,-118.16	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:126:59,67:59:2089:67:2384:-176.886,0,-150.349	0/1:47:16,31:16:557:31:1097:-84.8896,0,-36.3072	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:50:50,0:50:1772:0:0:0,-15.0515,-159.763	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:56:25,31:25:866:31:1082:-80.827,0,-61.3937	0/1:64:19,45:19:684:45:1605:-125.473,0,-42.6244	0/0:114:113,1:113:4032:1:36:0,-30.7191,-359.467	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713
chr05	2040974	.	C	T	31527.5	PASS	AB=0.50289;ABP=3.21113;AC=48;AF=0.258065;AN=186;AO=1402;CIGAR=1X;DP=6843;DPB=6843;DPRA=0.70584;EPP=3047.41;EPPR=11809.3;GTI=4;LEN=1;MEANALT=1;MQM=59.0007;MQMR=59.9274;NS=93;NUMALT=1;ODDS=1.19919;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50061;QR=193374;RO=5441;RPL=661;RPP=12.9229;RPPR=145.251;RPR=741;RUN=1;SAF=661;SAP=12.9229;SAR=741;SRF=2423;SRP=144.3;SRR=3018;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:19,30:19:680:30:1066:-81.4766,0,-46.7649	0/1:97:57,40:57:2021:40:1428:-99.6176,0,-152.961	0/0:129:129,0:129:4581:0:0:0,-38.8329,-412.456	0/0:107:107,0:107:3818:0:0:0,-32.2102,-343.686	0/1:34:14,20:14:496:20:720:-54.8938,0,-34.731	0/1:29:11,18:11:396:18:644:-49.5443,0,-27.2529	0/1:36:18,18:18:614:18:644:-47.3036,0,-44.7399	0/0:94:93,1:93:3295:1:36:0,-24.6985,-293.17	0/1:56:33,23:33:1171:23:828:-57.7705,0,-88.839	0/0:69:69,0:69:2444:0:0:0,-20.7711,-220.211	0/0:99:99,0:99:3494:0:0:0,-29.802,-314.658	0/0:145:145,0:145:5118:0:0:0,-43.6493,-460.762	0/1:150:69,81:69:2404:81:2904:-215.639,0,-171.46	0/0:89:89,0:89:3166:0:0:0,-26.7917,-285.147	0/0:129:129,0:129:4593:0:0:0,-38.8329,-413.529	0/0:122:122,0:122:4338:0:0:0,-36.7257,-390.597	0/0:102:102,0:102:3640:0:0:0,-30.7051,-327.803	0/0:91:91,0:91:3255:0:0:0,-27.3937,-293.17	0/0:65:65,0:65:2275:0:0:0,-19.5669,-205.011	0/1:40:23,17:23:820:17:604:-42.6375,0,-61.422	0/1:102:54,48:54:1940:48:1703:-122.841,0,-144.114	0/1:19:6,13:6:216:13:464:-36.3779,0,-14.0709	0/1:46:23,23:23:820:23:824:-60.5612,0,-60.2751	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.884	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:131:131,0:131:4680:0:0:0,-39.4349,-421.303	0/1:101:51,50:51:1828:50:1781:-130.14,0,-134.397	0/0:75:75,0:75:2654:0:0:0,-22.5772,-239.107	0/1:86:33,53:33:1180:53:1904:-145.743,0,-80.6195	0/1:32:21,11:21:752:11:392:-25.9871,0,-58.3733	0/1:35:18,17:18:640:17:608:-44.4345,0,-47.3929	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:266:266,0:266:9510:0:0:0,-80.074,-855.853	0/0:45:44,1:44:1561:1:36:0,-9.94807,-137.181	0/0:67:67,0:67:2365:0:0:0,-20.169,-213.067	.:.:.:.:.:.:.:.	0/0:80:78,2:78:2761:2:72:0,-17.2457,-241.895	0/1:53:29,24:29:1044:24:864:-62.1271,0,-78.3202	0/0:104:104,0:104:3685:0:0:0,-31.3071,-331.854	0/0:116:116,0:116:4139:0:0:0,-34.9195,-372.675	0/1:105:52,53:52:1860:53:1897:-139.274,0,-136.07	0/1:29:18,11:18:644:11:396:-27.239,0,-49.5607	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.793	0/1:118:51,67:51:1811:67:2385:-179.258,0,-127.749	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.996	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	1/1:3:0,3:0:0:3:108:-10.0742,-0.90309,0	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:30:12,18:12:417:18:628:-47.8137,0,-28.8293	0/1:2:1,1:1:21:1:36:-2.99621,0,-1.49789	0/1:68:34,34:34:1205:34:1215:-89.1535,0,-88.2277	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.267	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:6:3,3:3:104:3:104:-7.89663,0,-7.89663	0/1:36:16,20:16:572:20:720:-54.2917,0,-40.9763	0/0:143:142,1:142:5044:1:36:0,-39.449,-450.503	0/1:6:3,3:3:108:3:108:-8.26805,0,-8.26899	0/1:55:34,21:34:1224:21:756:-51.8106,0,-93.9104	0/1:78:32,46:32:1148:46:1636:-123.95,0,-80.1477	0/1:35:18,17:18:648:17:608:-44.5113,0,-48.1158	0/1:53:28,25:28:982:25:883:-63.8189,0,-72.7371	0/0:103:102,1:102:3641:1:36:0,-27.4088,-324.296	0/1:79:24,55:24:852:55:1954:-152.251,0,-53.2172	0/1:78:43,35:43:1544:35:1248:-89.1445,0,-115.773	0/0:44:44,0:44:1557:0:0:0,-13.2453,-140.42	0/1:138:72,66:72:2530:66:2368:-171.739,0,-186.408	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:64:64,0:64:2270:0:0:0,-19.2659,-204.562	0/0:102:102,0:102:3611:0:0:0,-30.7051,-325.193	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.851	0/1:68:41,27:41:1449:27:968:-66.9406,0,-110.234	0/0:71:70,1:70:2485:1:36:0,-17.7901,-220.319	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:83:47,36:47:1679:36:1292:-91.5918,0,-126.411	0/1:56:36,20:36:1284:20:701:-46.5537,0,-99.0048	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.484	0/1:116:61,55:61:2167:55:1934:-139.292,0,-160.375	0/0:109:109,0:109:3870:0:0:0,-32.8123,-348.496	0/0:145:145,0:145:5148:0:0:0,-43.6493,-463.461	0/1:230:128,102:128:4523:102:3642:-258.66,0,-337.998	0/1:49:23,26:23:813:26:932:-69.3953,0,-58.7386	0/0:113:113,0:113:3966:0:0:0,-34.0164,-357.13	0/0:102:102,0:102:3630:0:0:0,-30.7051,-326.906	0/0:95:95,0:95:3372:0:0:0,-28.5978,-303.696	0/1:129:66,63:66:2337:63:2256:-164.451,0,-171.755	0/1:129:38,91:38:1355:91:3260:-254.661,0,-83.4168	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.09	0/0:203:203,0:203:7190:0:0:0,-61.1091,-647.153
chr05	2040980	.	A	G	30238	PASS	AB=0.49544;ABP=3.50544;AC=48;AF=0.258065;AN=186;AO=1371;CIGAR=1X;DP=6877;DPB=6877;DPRA=0.731361;EPP=2954.1;EPPR=11870.2;GTI=4;LEN=1;MEANALT=1.03571;MQM=58.9956;MQMR=59.9418;NS=93;NUMALT=1;ODDS=0.142669;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48480;QR=196675;RO=5501;RPL=636;RPP=18.5337;RPPR=160.181;RPR=735;RUN=1;SAF=633;SAP=20.4724;SAR=738;SRF=2426;SRP=169.276;SRR=3075;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:18,28:18:644:28:997:-76.1836,0,-44.4432	0/1:101:61,40:61:2171:40:1409:-96.701,0,-165.252	0/0:132:132,0:132:4710:0:0:0,-39.736,-424.059	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.008	0/1:30:13,17:13:468:17:596:-44.9369,0,-33.4287	0/1:28:11,17:11:392:17:608:-46.6068,0,-27.1912	0/1:34:17,17:17:608:17:600:-44.0034,0,-44.817	0/0:100:99,1:99:3548:1:36:0,-26.5047,-315.93	0/1:54:32,22:32:1144:22:788:-54.7731,0,-87.0139	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.61	0/0:96:95,1:95:3388:1:32:0,-25.6996,-301.923	0/0:154:154,0:154:5489:0:0:0,-46.3586,-494.128	0/1:147:70,77:70:2496:77:2684:-197.527,0,-180.642	0/0:86:86,0:86:3045:0:0:0,-25.8886,-274.262	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.796	0/0:124:123,1:123:4392:1:36:0,-33.7294,-391.853	0/0:104:103,1:103:3677:1:36:0,-27.7088,-327.534	0/0:94:94,0:94:3354:0:0:0,-28.2968,-302.076	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:39:22,17:22:783:17:612:-43.66,0,-58.982	0/1:100:55,45:55:1980:45:1577:-112.106,0,-148.367	0/1:20:6,14:6:216:14:500:-39.3156,0,-13.7699	0/1:46:23,23:23:802:23:820:-60.2403,0,-58.65	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.417	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:135:135,0:135:4843:0:0:0,-40.639,-436.022	0/1:97:49,47:49:1743:47:1663:-120.689,0,-127.895	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.322	0/1:83:33,50:33:1188:50:1788:-136.211,0,-82.2431	0/1:33:21,12:21:756:12:432:-29.2826,0,-58.4332	0/1:34:18,16:18:636:16:568:-41.1388,0,-47.3327	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:268:267,0:267:9585:0:0:0,-80.375,-862.181	0/0:44:43,1:43:1548:1:36:0,-9.64704,-136.015	0/0:68:68,0:68:2410:0:0:0,-20.47,-216.958	.:.:.:.:.:.:.:.	0/0:79:77,2:77:2729:2:64:0,-17.7027,-239.774	0/1:52:29,23:29:1036:23:809:-57.4747,0,-77.9004	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/0:122:121,0:121:4336:0:0:0,-36.4246,-390.202	0/1:98:50,48:50:1784:48:1682:-122.034,0,-131.341	0/1:30:18,12:18:644:12:424:-29.4517,0,-49.2597	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.751	0/1:117:50,67:50:1784:67:2356:-176.545,0,-125.622	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.836	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	1/1:3:0,3:0:0:3:104:-9.70187,-0.90309,0	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.581	0/1:29:12,17:12:423:17:586:-44.3325,0,-29.6752	0/1:2:1,1:1:27:1:36:-2.99621,0,-2.09772	0/1:70:36,34:36:1276:34:1193:-86.4392,0,-94.0149	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.866	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:37:17,20:17:604:20:720:-53.9907,0,-43.5525	0/0:143:142,1:142:5071:1:36:0,-39.449,-452.926	0/1:7:4,3:4:144:3:104:-7.59466,0,-11.2064	0/1:54:34,20:34:1211:20:716:-48.5121,0,-93.0399	0/1:79:33,46:33:1184:46:1640:-124.006,0,-83.0851	0/1:37:20,17:20:720:17:604:-43.5479,0,-53.9907	0/1:54:28,26:28:1008:26:932:-67.9273,0,-74.7807	0/0:107:106,1:106:3796:1:36:0,-28.6129,-338.223	0/1:78:24,54:24:856:54:1913:-148.805,0,-53.879	0/1:76:43,33:43:1548:33:1165:-82.2767,0,-116.735	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:138:72,65:72:2579:65:2289:-164.632,0,-190.817	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:105:105,0:105:3767:0:0:0,-31.6081,-339.22	0/0:64:64,0:64:2274:0:0:0,-19.2659,-204.917	0/1:69:41,28:41:1472:28:999:-69.3994,0,-112.005	0/0:72:71,1:71:2543:1:36:0,-18.0911,-225.537	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:83:47,36:47:1676:36:1296:-91.9492,0,-126.142	0/1:56:36,20:36:1280:20:716:-47.9082,0,-98.6446	0/0:105:105,0:105:3776:0:0:0,-31.6081,-340.036	0/1:116:61,55:61:2180:55:1915:-137.585,0,-161.545	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.431	0/0:147:147,0:147:5250:0:0:0,-44.2514,-472.634	0/1:233:129,104:129:4579:104:3683:-261.046,0,-342.133	0/1:48:23,25:23:828:25:873:-64.3829,0,-60.3947	0/0:114:113,0:113:4044:0:0:0,-34.0164,-363.788	0/0:103:103,0:103:3689:0:0:0,-31.0061,-332.211	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/1:126:66,60:66:2355:60:2102:-151.506,0,-174.279	0/1:127:38,89:38:1360:89:3165:-246.716,0,-84.4698	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.582	0/0:207:207,0:207:7409:0:0:0,-62.3132,-666.846
chr05	2118387	.	A	C	12065.6	PASS	AB=0.428996;ABP=91.512;AC=43;AF=0.231183;AN=186;AO=871;CIGAR=1X;DP=4487;DPB=4487;DPRA=1.03067;EPP=1894.36;EPPR=7852.88;GTI=1;LEN=1;MEANALT=1.02222;MQM=54.8783;MQMR=59.5272;NS=93;NUMALT=1;ODDS=0.997999;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29731;QR=128839;RO=3615;RPL=871;RPP=1894.36;RPPR=7852.88;RPR=0;RUN=1;SAF=871;SAP=1894.36;SAR=0;SRF=3615;SRP=7852.88;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:22,6:22:792:6:197:-9.60254,0,-63.0656	0/1:12:7,5:7:248:5:176:-12.5527,0,-19.0518	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.65	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.349	0/1:14:10,4:10:352:4:144:-9.08032,0,-27.8038	0/1:13:5,8:5:180:8:279:-21.5052,0,-12.6387	0/1:53:23,30:23:811:30:1010:-74.9563,0,-57.3554	0/0:64:64,0:64:2268:0:0:0,-19.2659,-204.341	0/1:42:31,11:31:1108:11:369:-20.8616,0,-87.3796	0/0:43:43,0:43:1544:0:0:0,-12.9443,-138.751	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.218	0/0:79:79,0:79:2811:0:0:0,-23.7814,-252.762	0/1:49:28,21:28:1000:21:715:-49.8263,0,-75.5201	0/0:50:50,0:50:1758:0:0:0,-15.0515,-158.494	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.179	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.612	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4516	0/0:39:39,0:39:1374:0:0:0,-11.7402,-123.933	0/1:74:34,40:34:1216:40:1359:-99.9271,0,-87.4595	0/1:60:38,22:38:1368:22:788:-52.2914,0,-105.351	0/1:77:42,35:42:1503:35:1216:-86.5252,0,-112.143	0/1:20:13,7:13:464:7:252:-16.9884,0,-36.0699	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7137	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.987	0/0:95:95,0:95:3390:0:0:0,-28.5978,-305.293	0/1:137:87,50:87:3115:50:1692:-110.825,0,-239.063	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.2944	0/1:141:105,36:105:3747:36:1208:-66.4648,0,-294.979	0/1:32:26,6:26:917:6:212:-9.749,0,-73.2116	0/1:56:39,17:39:1404:17:580:-35.5446,0,-109.785	0/1:7:5,2:5:180:2:72:-4.71982,0,-14.4449	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.158	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:11:8,3:8:284:3:104:-6.38317,0,-22.592	0/0:106:106,0:106:3780:0:0:0,-31.9092,-340.377	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.6888	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.771	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:32:13,19:13:464:19:633:-47.5833,0,-32.4463	0/0:74:74,0:74:2634:0:0:0,-22.2762,-237.252	0/0:28:28,0:28:966:0:0:0,-8.42884,-87.2468	0/1:33:18,15:18:640:15:490:-34.4391,0,-47.9953	0/1:69:50,19:50:1780:19:680:-40.7399,0,-139.709	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.28	0/1:60:26,34:26:932:34:1179:-88.1922,0,-66.1347	0/0:47:47,0:47:1648:0:0:0,-14.1484,-148.594	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.973	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.36	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.919	0/1:42:28,14:28:992:14:462:-29.2413,0,-76.9363	0/1:17:10,7:10:347:7:233:-16.1584,0,-26.4461	0/1:70:37,33:37:1328:33:1120:-79.8345,0,-98.2258	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:7:4,3:4:144:3:99:-7.12718,0,-11.2064	0/1:6:3,3:3:108:3:108:-8.26617,0,-8.26899	0/1:42:21,21:21:752:21:736:-53.8116,0,-55.3512	0/0:72:72,0:72:2564:0:0:0,-21.6742,-230.981	.:.:.:.:.:.:.:.	0/1:62:39,23:39:1400:23:774:-51.2315,0,-107.571	0/1:54:23,31:23:820:31:1107:-83.4437,0,-57.8561	0/1:30:15,15:15:540:15:489:-35.2416,0,-39.888	0/1:31:23,8:23:820:8:288:-16.9165,0,-64.7628	0/0:80:78,2:78:2787:2:72:0,-17.2506,-244.145	0/1:78:20,58:20:716:58:1968:-153.762,0,-41.2828	0/1:37:20,17:20:711:17:583:-41.5894,0,-53.1775	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.2263	0/1:44:18,26:18:644:26:887:-66.8663,0,-45.0267	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.313	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.31	0/0:104:102,2:102:3631:2:72:0,-24.4753,-320.16	0/1:58:34,24:34:1209:24:815:-56.1327,0,-91.6495	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/1:17:9,8:9:320:8:284:-20.7608,0,-23.82	0/1:50:29,21:29:1044:21:726:-50.5296,0,-79.2233	0/1:90:47,43:47:1667:43:1454:-103.575,0,-123.145	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.3	0/1:32:17,15:17:608:15:496:-35.2979,0,-45.4175	0/0:66:66,0:66:2310:0:0:0,-19.868,-208.139	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/1:74:47,27:47:1671:27:910:-59.888,0,-128.391	0/1:9:2,7:2:72:7:244:-19.5705,0,-4.12745	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.77	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.524	0/1:107:56,50:56:1976:50:1675:-118.368,0,-145.831	0/1:44:21,23:21:748:23:774:-56.3412,0,-54.4	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.451	0/0:73:73,0:73:2599:0:0:0,-21.9752,-234.092
chr05	2140228	.	A	G	37366.3	PASS	AB=0.469628;ABP=27.5447;AC=142;AF=0.755319;AN=188;AO=4440;CIGAR=1X;DP=6078;DPB=6078;DPRA=0;EPP=9592.3;EPPR=3527.36;GTI=3;LEN=1;MEANALT=1.03191;MQM=22.0475;MQMR=22.3719;NS=94;NUMALT=1;ODDS=0.195943;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157517;QR=58377;RO=1635;RPL=6;RPP=9592.3;RPPR=3518.71;RPR=4434;RUN=1;SAF=0;SAP=9644.35;SAR=4440;SRF=1;SRP=3544.69;SRR=1634;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:19,15:19:684:15:540:-16.8199,0,-25.438	0/1:45:23,22:23:820:22:788:-26.0272,0,-27.8035	1/1:137:0,137:0:0:137:4867:-245.032,-41.2411,0	1/1:95:2,93:2:72:93:3291:-184.81,-24.268,0	0/1:19:9,10:9:324:10:351:-13.1926,0,-11.3904	0/1:15:9,6:9:324:6:212:-6.41153,0,-11.7971	0/1:46:21,25:21:728:25:877:-37.248,0,-28.959	1/1:92:0,92:0:0:92:3287:-167.176,-27.6948,0	0/1:62:51,11:51:1836:11:396:-1.22946,0,-72.8454	1/1:50:0,49:0:0:49:1729:-99.2988,-14.7505,0	1/1:37:0,37:0:0:37:1298:-75.3829,-11.1381,0	1/1:59:0,59:0:0:59:2068:-105.518,-17.7608,0	0/1:50:23,27:23:819:27:956:-33.4316,0,-26.2655	1/1:35:0,34:0:0:34:1194:-63.5585,-10.235,0	1/1:55:0,55:0:0:55:1940:-111.161,-16.5567,0	1/1:37:0,37:0:0:37:1300:-69.2357,-11.1381,0	1/1:18:0,18:0:0:18:636:-32.3836,-5.41854,0	1/1:23:0,23:0:0:23:807:-41.2745,-6.92369,0	1/1:15:0,15:0:0:15:536:-27.0407,-4.51545,0	0/1:102:47,55:47:1683:55:1942:-81.6924,0,-66.9974	0/1:157:78,79:78:2796:79:2824:-101.127,0,-99.1095	0/1:106:72,34:72:2551:34:1209:-43.2106,0,-126.48	0/1:98:53,45:53:1877:45:1600:-62.7116,0,-78.6312	1/1:44:4,40:4:140:40:1436:-67.4302,-5.54302,0	1/1:50:0,50:0:0:50:1775:-93.9595,-15.0515,0	1/1:164:0,164:0:0:164:5750:-357.603,-49.3689,0	0/1:289:165,124:165:5898:124:4420:-146.44,0,-222.477	1/1:45:0,45:0:0:45:1601:-84.3045,-13.5464,0	0/1:146:82,64:82:2944:64:2274:-97.605,0,-136.916	0/1:70:40,30:40:1440:30:1071:-35.3992,0,-54.2536	0/1:74:31,43:31:1112:43:1539:-66.0321,0,-41.1575	0/1:9:2,7:2:72:7:252:-10.556,0,-1.16285	1/1:32:2,30:2:72:30:1057:-52.2006,-5.66845,0	1/1:6:0,6:0:0:6:216:-10.9413,-1.80618,0	1/1:9:0,9:0:0:9:324:-16.3125,-2.70927,0	0/1:19:4,15:4:140:15:540:-21.3353,0,-1.62649	1/1:172:1,171:1:36:171:6073:-372.856,-48.4781,0	1/1:111:0,111:0:0:111:3945:-209.112,-33.4143,0	1/1:30:0,30:0:0:30:1076:-53.8968,-9.0309,0	1/1:2:0,2:0:0:2:72:-3.96451,-0.60206,0	1/1:68:0,68:0:0:68:2390:-127.207,-20.47,0	0/1:37:20,17:20:695:17:600:-22.2271,0,-26.4831	1/1:57:0,57:0:0:57:2039:-107.507,-17.1587,0	1/1:29:0,29:0:0:29:1024:-58.7221,-8.72987,0	1/1:43:1,42:1:36:42:1492:-83.0276,-9.75667,0	0/1:101:61,40:61:2188:40:1428:-57.5055,0,-103.403	1/1:44:0,44:0:0:44:1547:-78.4457,-13.2453,0	0/1:166:95,71:95:3412:71:2534:-95.2505,0,-144.526	1/1:42:0,42:0:0:42:1481:-86.4893,-12.6433,0	1/1:62:0,62:0:0:62:2167:-125.427,-18.6639,0	1/1:91:0,91:0:0:91:3236:-199.812,-27.3937,0	0/1:6:5,1:5:176:1:36:-0.472686,0,-8.64889	1/1:125:1,123:1:36:123:4384:-217.212,-34.6696,0	0/1:21:12,9:12:432:9:324:-13.907,0,-19.8806	0/1:19:13,6:13:468:6:216:-5.22176,0,-17.7546	0/1:91:50,41:50:1792:41:1463:-49.7172,0,-67.1977	1/1:34:0,34:0:0:34:1211:-69.4002,-10.235,0	0/1:5:1,4:1:36:4:144:-7.44846,0,-0.961755	0/1:7:1,6:1:36:6:216:-11.4608,0,-0.359695	0/1:39:21,18:21:752:18:620:-21.7426,0,-27.7993	0/1:65:27,38:27:959:38:1352:-58.1518,0,-36.3931	0/1:15:9,6:9:324:6:216:-8.01831,0,-14.1712	0/1:125:64,61:64:2296:61:2176:-97.1809,0,-103.453	0/1:129:53,76:53:1895:76:2724:-116.331,0,-69.6088	0/1:26:20,6:20:720:6:212:-3.63154,0,-29.8524	0/1:55:32,23:32:1148:23:824:-31.4855,0,-49.2754	1/1:78:0,78:0:0:78:2767:-159.402,-23.4803,0	0/1:108:77,31:77:2732:31:1112:-31.2698,0,-123.855	0/1:22:11,11:11:392:11:396:-14.2432,0,-14.2254	1/1:55:0,55:0:0:55:1964:-98.6144,-16.5567,0	0/1:30:15,15:15:536:15:515:-23.8643,0,-24.1328	0/1:10:4,6:4:140:6:207:-9.40999,0,-5.39364	1/1:118:0,118:0:0:118:4210:-211.274,-35.5215,0	1/1:46:0,46:0:0:46:1652:-82.5432,-13.8474,0	1/1:83:0,83:0:0:83:2909:-155.22,-24.9855,0	1/1:148:0,148:0:0:148:5253:-302.127,-44.5524,0	0/1:34:16,18:16:576:18:644:-23.6339,0,-18.6103	1/1:72:0,72:0:0:72:2575:-129.692,-21.6742,0	0/1:15:8,7:8:288:7:252:-8.21628,0,-10.0067	0/1:248:108,140:108:3824:140:4982:-187.474,0,-127.686	0/1:44:24,20:24:864:20:703:-22.6721,0,-29.9232	1/1:142:0,142:0:0:142:5038:-288.609,-42.7463,0	0/1:54:25,29:25:887:29:1032:-43.0312,0,-34.7575	1/1:58:0,58:0:0:58:2076:-118.754,-17.4597,0	1/1:38:0,38:0:0:38:1335:-77.3982,-11.4391,0	0/1:98:46,52:46:1627:52:1848:-76.8776,0,-65.8413	0/1:12:3,9:3:108:9:320:-12.6859,0,-1.95777	1/1:59:0,59:0:0:59:2083:-106.288,-17.7608,0	1/1:38:0,38:0:0:38:1328:-68.6335,-11.4391,0	1/1:35:0,35:0:0:35:1231:-65.685,-10.5361,0	0/1:75:30,45:30:1067:45:1570:-61.6197,0,-33.8764	0/1:64:44,20:44:1567:20:690:-21.5017,0,-70.8751	1/1:59:0,59:0:0:59:2103:-121.308,-17.7608,0	1/1:74:0,74:0:0:74:2597:-149.778,-22.2762,0
chr05	2218638	.	G	A	72982.9	PASS	AB=0.460103;ABP=32.6398;AC=137;AF=0.736559;AN=186;AO=3454;CIGAR=1X;DP=4641;DPB=4641;DPRA=17.1556;EPP=7503.28;EPPR=2545.8;GTI=2;LEN=1;MEANALT=1.1;MQM=59.9464;MQMR=59.9872;NS=93;NUMALT=1;ODDS=0.793223;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123176;QR=41743;RO=1171;RPL=9;RPP=7425.31;RPPR=2545.8;RPR=3445;RUN=1;SAF=3445;SAP=7425.31;SAR=9;SRF=1171;SRP=2545.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:32,39:32:1152:39:1385:-103.574,0,-82.617	0/1:54:31,23:31:1112:23:820:-57.8669,0,-84.1357	1/1:67:0,67:0:0:67:2360:-212.653,-20.169,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:42:31,11:31:1104:11:396:-23.3395,0,-87.0274	0/1:29:13,16:13:460:16:564:-42.3604,0,-33.0055	0/1:45:11,34:11:396:34:1224:-96.9183,0,-22.4226	1/1:62:3,59:3:108:59:2109:-179.996,-8.58869,0	0/1:107:58,49:58:2072:49:1745:-125.121,0,-154.541	1/1:75:0,75:0:0:75:2669:-240.454,-22.5773,0	1/1:54:0,54:0:0:54:1925:-173.525,-16.2556,0	1/1:106:0,106:0:0:106:3804:-342.549,-31.9092,0	0/1:62:21,40:21:752:40:1420:-109.375,0,-49.2837	1/1:47:0,47:0:0:47:1673:-150.855,-14.1484,0	1/1:54:0,54:0:0:54:1915:-172.627,-16.2556,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	1/1:36:0,35:0:0:35:1252:-112.621,-10.5361,0	0/1:46:16,30:16:568:30:1080:-83.6659,0,-37.6045	0/1:111:68,42:68:2440:42:1469:-99.0279,0,-186.382	0/1:42:27,15:27:953:15:540:-36.2933,0,-73.4401	0/1:66:36,30:36:1288:30:1065:-76.2918,0,-96.3556	0/1:25:8,17:8:288:17:578:-44.8117,0,-18.7417	1/1:61:0,61:0:0:61:2173:-195.835,-18.3628,0	1/1:130:2,128:2:72:128:4540:-401.926,-32.2972,0	0/1:114:52,62:52:1849:62:2186:-162.681,0,-132.371	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:71:49,22:49:1748:22:788:-49.8717,0,-136.231	0/1:67:37,30:37:1293:30:1080:-77.3442,0,-96.5	0/1:55:29,26:29:1029:26:932:-67.5724,0,-76.3645	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:141:0,141:0:0:141:5060:-455.474,-42.4452,0	1/1:47:0,47:0:0:47:1673:-150.855,-14.1484,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:71:1,70:1:36:70:2474:-219.313,-17.7749,0	0/1:24:11,13:11:396:13:464:-34.8728,0,-28.758	1/1:102:0,102:0:0:102:3615:-325.553,-30.7051,0	1/1:47:0,47:0:0:47:1688:-152.201,-14.1484,0	1/1:63:0,60:0:0:60:2152:-193.587,-18.0618,0	0/1:63:36,27:36:1288:27:964:-68.1119,0,-97.2587	1/1:48:0,48:0:0:48:1698:-153.102,-14.4494,0	0/1:71:37,34:37:1294:34:1220:-88.7337,0,-95.3835	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:33:0,33:0:0:33:1180:-106.503,-9.93399,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:27:0,27:0:0:27:953:-86.0833,-8.12781,0	0/1:25:12,13:12:428:13:468:-34.5031,0,-31.3331	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:37:21,16:21:726:16:572:-40.6753,0,-54.5179	1/1:20:0,20:0:0:20:697:-63.0507,-6.0206,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:44:20,24:20:716:24:860:-64.4765,0,-51.5224	0/1:66:37,29:37:1324:29:1014:-71.6995,0,-99.5941	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:64:31,33:31:1104:33:1176:-86.8818,0,-80.4047	0/1:73:39,34:39:1370:34:1216:-87.7708,0,-101.619	0/1:36:21,15:21:756:15:540:-38.0995,0,-57.5301	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	1/1:74:3,68:3:104:68:2428:-209.067,-12.0235,0	0/1:55:39,16:39:1400:16:576:-35.6183,0,-109.742	0/1:17:7,10:7:248:10:356:-27.2637,0,-17.5467	1/1:32:0,32:0:0:32:1144:-103.265,-9.63296,0	0/1:33:18,15:18:644:15:536:-38.6408,0,-48.3566	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:71:0,71:0:0:71:2529:-227.828,-21.3731,0	1/1:76:0,76:0:0:76:2679:-241.352,-22.8783,0	0/1:61:33,28:33:1176:28:996:-71.5806,0,-87.7849	1/1:52:0,50:0:0:50:1777:-159.851,-15.0515,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:32:20,12:20:720:12:428:-29.2258,0,-55.4958	0/1:49:28,21:28:1004:21:756:-53.6168,0,-75.9254	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:80:51,29:51:1813:29:1040:-69.832,0,-139.367	1/1:54:0,53:0:0:53:1900:-170.918,-15.9546,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:99:44,55:44:1564:55:1958:-146.693,0,-111.25	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	1/1:59:0,59:0:0:59:2105:-189.717,-17.7608,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:62:27,33:27:960:33:1188:-88.807,0,-68.295	0/1:67:59,8:59:2120:8:288:-6.0984,0,-170.899	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	1/1:107:0,105:0:0:105:3734:-335.899,-31.6082,0
chr05	2233785	.	A	C	102571	PASS	AB=0.470607;ABP=25.9873;AC=141;AF=0.75;AN=188;AO=5043;CIGAR=1X;DP=6675;DPB=6675;DPRA=0;EPP=10953.7;EPPR=3544.68;GTI=2;LEN=1;MEANALT=1.01064;MQM=50.3105;MQMR=59.5132;NS=94;NUMALT=1;ODDS=2.61825;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176485;QR=58354;RO=1631;RPL=5043;RPP=10953.7;RPPR=3544.68;RPR=0;RUN=1;SAF=5043;SAP=10953.7;SAR=0;SRF=1631;SRP=3544.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:13,13:13:456:13:443:-32.2342,0,-33.5339	0/1:53:29,24:29:1044:24:843:-59.9408,0,-78.3202	1/1:152:0,152:0:0:152:5351:-479.284,-45.7566,0	1/1:224:1,223:1:36:223:7840:-698.165,-63.8324,0	0/1:8:7,1:7:248:1:36:-1.17053,0,-20.256	0/1:13:4,9:4:144:9:320:-25.1124,0,-9.40023	0/1:39:22,17:22:784:17:599:-42.3089,0,-59.1437	1/1:124:0,124:0:0:124:4370:-391.578,-37.3277,0	0/1:82:29,53:29:1031:53:1880:-144.12,0,-68.3084	1/1:73:1,72:1:36:72:2552:-225.198,-18.3769,0	1/1:22:0,22:0:0:22:792:-71.371,-6.62266,0	1/1:77:0,77:0:0:77:2686:-240.488,-23.1793,0	0/1:60:23,37:23:828:37:1273:-96.3355,0,-56.7492	1/1:41:0,41:0:0:41:1409:-126.419,-12.3422,0	1/1:46:0,46:0:0:46:1600:-143.415,-13.8474,0	1/1:36:0,36:0:0:36:1265:-113.502,-10.8371,0	1/1:22:0,22:0:0:22:775:-69.7542,-6.62266,0	1/1:19:0,19:0:0:19:676:-60.9226,-5.71957,0	1/1:22:0,22:0:0:22:765:-67.8441,-6.62266,0	0/1:168:79,89:79:2832:89:3120:-229.616,0,-204.545	0/1:154:88,66:88:3156:66:2288:-158.688,0,-237.845	0/1:33:18,15:18:648:15:531:-37.8104,0,-48.7179	0/1:88:49,39:49:1752:39:1382:-97.2412,0,-131.419	0/1:48:6,42:6:212:42:1475:-117.948,0,-4.97536	1/1:36:0,36:0:0:36:1278:-114.684,-10.8371,0	1/1:240:0,240:0:0:240:8429:-756.306,-72.2472,0	0/1:206:95,111:95:3391:111:3883:-284.636,0,-243.324	1/1:30:0,30:0:0:30:1042:-93.6425,-9.0309,0	0/1:219:125,94:125:4471:94:3231:-224.177,0,-336.61	0/1:94:54,40:54:1936:40:1419:-99.054,0,-146.209	0/1:69:50,19:50:1762:19:660:-38.7654,0,-138.077	0/1:3:1,2:1:36:2:72:-5.89657,0,-2.69518	1/1:9:0,9:0:0:9:324:-28.6659,-2.70927,0	1/1:3:0,3:0:0:3:108:-10.0325,-0.90309,0	1/1:13:0,13:0:0:13:459:-41.2131,-3.91339,0	0/1:18:8,10:8:284:10:352:-26.4776,0,-20.4143	1/1:155:0,155:0:0:155:5440:-487.586,-46.6597,0	1/1:72:0,72:0:0:72:2530:-226.734,-21.6742,0	1/1:32:0,32:0:0:32:1122:-100.895,-9.63296,0	1/1:10:0,10:0:0:10:356:-32.2143,-3.0103,0	1/1:140:0,140:0:0:140:4900:-438.587,-42.1442,0	0/1:20:12,8:12:432:8:284:-19.4957,0,-33.2006	1/1:78:0,78:0:0:78:2711:-242.272,-23.4803,0	1/1:25:0,25:0:0:25:861:-77.2159,-7.52575,0	1/1:40:0,40:0:0:40:1405:-125.11,-12.0412,0	0/1:66:40,26:40:1432:26:902:-61.3865,0,-109.294	1/1:82:0,82:0:0:82:2893:-257.593,-24.6845,0	0/1:176:104,72:104:3712:72:2539:-175.016,0,-281.008	1/1:78:0,78:0:0:78:2718:-244.089,-23.4803,0	1/1:92:0,92:0:0:92:3218:-288.525,-27.6948,0	1/1:88:2,85:2:72:85:2995:-262.176,-19.7119,0	0/1:9:5,4:5:180:4:139:-10.0982,0,-13.8428	1/1:91:0,91:0:0:91:3149:-282.561,-27.3937,0	0/1:24:11,13:11:388:13:460:-34.4511,0,-28.0276	0/1:13:7,6:7:252:6:212:-15.436,0,-19.1156	0/1:81:50,31:50:1788:31:1082:-72.8051,0,-136.776	1/1:16:0,16:0:0:16:557:-50.1211,-4.81648,0	0/1:12:8,4:8:288:4:140:-9.18741,0,-22.655	0/1:11:1,10:1:36:10:352:-28.666,0,-0.286945	0/1:29:10,19:10:356:19:657:-50.4348,0,-23.6514	0/1:54:28,26:28:1004:26:932:-67.413,0,-74.405	0/1:6:4,2:4:144:2:72:-5.00814,0,-11.5074	0/1:250:134,116:134:4808:116:4079:-291.283,0,-357.254	0/1:86:52,34:52:1868:34:1207:-82.6555,0,-142.498	0/1:44:21,23:21:752:23:807:-59.3466,0,-54.7609	0/1:62:30,32:30:1076:32:1148:-84.3172,0,-78.4677	1/1:146:3,143:3:108:143:4981:-436.584,-33.8934,0	0/1:165:118,47:118:4223:47:1638:-97.5812,0,-330.383	0/1:36:24,12:24:860:12:419:-27.0195,0,-66.8848	1/1:34:0,34:0:0:34:1190:-106.9,-10.235,0	0/1:26:9,17:9:320:17:604:-46.6591,0,-21.3156	0/1:23:12,11:12:432:11:392:-28.5849,0,-32.2975	1/1:133:0,133:0:0:133:4591:-410.921,-40.037,0	1/1:93:0,93:0:0:93:3304:-295.773,-27.9958,0	1/1:90:0,90:0:0:90:3153:-282.381,-27.0927,0	1/1:199:0,199:0:0:199:6899:-618.551,-59.905,0	0/1:22:7,15:7:252:15:536:-41.423,0,-16.3488	1/1:120:1,119:1:36:119:4188:-370.358,-32.5253,0	0/1:16:5,11:5:180:11:383:-29.8548,0,-11.7356	0/1:98:45,53:45:1600:53:1852:-136.106,0,-114.747	0/1:98:46,52:46:1648:52:1771:-129.357,0,-118.991	1/1:145:1,144:1:36:144:5044:-448.449,-40.0511,0	0/1:50:27,23:27:968:23:795:-56.5919,0,-72.2878	1/1:51:1,50:1:36:50:1729:-151.554,-11.7543,0	1/1:28:0,28:0:0:28:986:-88.77,-8.42884,0	0/1:86:43,43:43:1540:43:1532:-111.701,0,-112.959	0/1:29:12,17:12:428:17:593:-43.9914,0,-30.1004	1/1:38:0,38:0:0:38:1281:-114.981,-11.4391,0	1/1:59:0,59:0:0:59:2031:-182.257,-17.7608,0	1/1:11:0,11:0:0:11:392:-35.4355,-3.31133,0	0/1:47:22,25:22:788:25:869:-63.5014,0,-57.0918	0/1:42:34,8:34:1224:8:288:-13.5381,0,-97.8238	1/1:206:0,206:0:0:206:7133:-639.51,-62.0122,0	1/1:72:0,72:0:0:72:2516:-224.867,-21.6742,0
chr05	2286114	.	TAGAG	TTGAG,TTGAA	515341	PASS	AB=0.481961,0.511131;ABP=28.7853,12.8232;AC=141,47;AF=0.75,0.25;AN=188;AO=14215,4679;CIGAR=1M1X3M,1M1X2M1X;DP=19022;DPB=19025.8;DPRA=0,0.930715;EPP=30870.5,10163.3;EPPR=37.7539;GTI=0;LEN=1,5;MEANALT=2.6383,3.18519;MQM=59.9719,59.71;MQMR=59.0625;NS=94;NUMALT=2;ODDS=9.79932;PAIRED=0,0;PAIREDR=0;PAO=6.33333,10.3333;PQA=215.333,283.333;PQR=215.333;PRO=6.33333;QA=505802,162453;QR=452;RO=16;RPL=6947,2139;RPP=18.7508,77.6363;RPPR=16.582;RPR=7268,2540;RUN=1,1;SAF=6947,2139;SAP=18.7508,77.6363;SAR=7268,2540;SRF=13;SRP=16.582;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:103:2,45,54:2:55:45,54:1608,1847:-276.117,-145.606,-136.401,-126.829,0,-114.914	1/2:394:0,216,175:0:0:216,175:7730,6057:-1122.54,-492.18,-427.158,-630.373,0,-577.693	1/2:406:1,211,191:1:24:211,191:7499,6615:-1146.48,-535.693,-474.034,-609.284,0,-553.646	1/1:423:0,423,0:0:0:423,0:15101,0:-1358.76,-127.336,0,-1358.76,-127.336,-1358.76	1/2:158:0,92,65:0:0:92,65:3287,2282:-453.691,-185.69,-157.995,-268.024,0,-248.457	1/2:147:1,63,83:1:27:63,83:2210,2931:-416.122,-236.588,-219.751,-177.788,0,-154.93	1/2:463:0,228,232:0:0:228,232:8118,8030:-1314.28,-652.628,-583.993,-661.734,0,-591.895	1/1:311:0,306,1:0:0:306,1:10901,36:-980.699,-92.1152,0,-977.762,-89.1603,-977.46	1/2:249:0,93,152:0:0:93,152:3336,5248:-698.459,-426.351,-398.355,-272.171,0,-226.414	1/1:195:1,193,0:1:36:193,0:6875,0:-614.842,-55.1614,0,-615.143,-58.0988,-618.081	1/1:191:0,187,0:0:0:187,0:6605,0:-594.197,-56.2926,0,-594.197,-56.2926,-594.197	1/1:167:0,167,0:0:0:167,0:5897,0:-530.818,-50.272,0,-530.818,-50.272,-530.818	1/2:140:0,77,61:0:0:77,61:2734,2116:-394.809,-172.035,-148.855,-222.827,0,-204.464	1/1:203:0,202,0:0:0:202,0:7136,0:-642.049,-60.8081,0,-642.049,-60.8081,-642.049	1/1:124:0,124,0:0:0:124,0:4393,0:-395.543,-37.3277,0,-395.543,-37.3277,-395.543	1/1:130:0,130,0:0:0:130,0:4586,0:-412.906,-39.1339,0,-412.906,-39.1339,-412.906	1/1:196:0,195,0:0:0:195,0:6921,0:-622.69,-58.7009,0,-622.69,-58.7009,-622.69	1/1:139:0,137,0:0:0:137,0:4896,0:-440.487,-41.2411,0,-440.487,-41.2411,-440.487	1/1:119:1,118,0:1:25:118,0:4179,0:-373.741,-33.3227,0,-374.042,-35.5215,-375.99	1/2:465:0,221,242:0:0:221,242:7922,8370:-1326.29,-680.17,-613.642,-646.174,0,-573.324	1/2:335:0,160,174:0:0:160,174:5688,6024:-953.13,-489.606,-441.442,-463.604,0,-411.225	1/2:164:0,52,111:0:0:52,111:1837,3860:-463.485,-313.881,-298.227,-149.664,0,-116.249	1/2:67:0,37,30:0:0:37,30:1324,1024:-191.403,-83.4274,-72.2893,-108.324,0,-99.2931	1/1:249:1,241,4:1:31:241,4:8609,144:-771.662,-70.0655,0,-760.213,-60.7886,-761.497	1/1:178:0,178,0:0:0:178,0:6379,0:-574.198,-53.5833,0,-574.198,-53.5833,-574.198	1/1:378:0,375,0:0:0:375,0:13312,0:-1197.65,-112.886,0,-1197.65,-112.886,-1197.65	1/2:420:0,208,212:0:0:208,212:7429,7315:-1200.27,-594.581,-531.967,-606.038,0,-542.22	1/1:74:0,74,0:0:0:74,0:2616,0:-235.687,-22.2762,0,-235.687,-22.2762,-235.687	1/2:560:0,284,274:0:0:284,274:10148,9578:-1606.63,-779.224,-693.732,-827.468,0,-744.986	1/2:265:0,131,132:0:0:131,132:4656,4583:-751.926,-372.509,-333.074,-379.408,0,-339.672	1/2:248:0,124,121:0:0:124,121:4416,4194:-700.774,-340.847,-303.519,-359.919,0,-323.494	1/2:16:0,6,10:0:0:6,10:212,358:-46.8163,-29.5526,-27.7465,-17.6186,0,-14.6083	1/1:40:0,36,1:0:0:36,1:1287,36:-115.773,-10.8371,0,-112.836,-7.89966,-112.535	1/2:16:0,8,8:0:0:8,8:288,287:-47.2682,-23.7682,-21.36,-23.8592,0,-21.4509	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/2:20:0,13,7:0:0:13,7:436,251:-56.1268,-20.8306,-16.9173,-35.6464,0,-33.5392	1/1:343:1,338,0:1:22:338,0:11960,0:-1073.99,-100.088,0,-1074.29,-101.748,-1075.97	1/1:256:0,253,1:0:0:253,1:9060,35:-815.091,-76.1606,0,-812.243,-73.2779,-811.942	1/1:165:0,161,2:0:0:161,2:5687,65:-511.604,-48.4658,0,-506.358,-43.2372,-505.756	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:332:0,326,6:0:0:326,6:11624,198:-1045.68,-98.1358,0,-1029.68,-81.8416,-1027.87	1/2:78:0,38,39:0:0:38,39:1351,1361:-220.78,-110.682,-99.2426,-110.091,0,-98.3512	1/1:276:1,273,0:1:36:273,0:9713,0:-870.589,-79.2122,0,-870.89,-82.1812,-873.828	1/1:117:0,117,0:0:0:117,0:4140,0:-372.786,-35.2205,0,-372.786,-35.2205,-372.786	1/1:117:0,117,0:0:0:117,0:4168,0:-375.3,-35.2205,0,-375.3,-35.2205,-375.3	1/2:164:0,82,81:0:0:82,81:2936,2817:-468.533,-229.095,-204.411,-239.519,0,-215.135	1/1:241:0,241,0:0:0:241,0:8587,0:-772.628,-72.5482,0,-772.628,-72.5482,-772.628	1/2:260:0,124,134:0:0:124,134:4435,4683:-742.634,-380.993,-343.665,-361.698,0,-321.36	1/1:251:0,249,0:0:0:249,0:8857,0:-796.856,-74.9565,0,-796.856,-74.9565,-796.856	1/1:248:0,248,0:0:0:248,0:8842,0:-795.762,-74.6554,0,-795.762,-74.6554,-795.762	1/1:344:0,344,0:0:0:344,0:12269,0:-1104.05,-103.554,0,-1104.05,-103.554,-1104.05	1/2:21:0,14,7:0:0:14,7:504,249:-61.7751,-20.6484,-16.434,-41.4837,0,-39.3765	1/1:363:0,361,0:0:0:361,0:12859,0:-1156.8,-108.672,0,-1156.8,-108.672,-1156.8	1/2:84:0,40,44:0:0:40,44:1432,1517:-240.271,-123.486,-111.445,-117.136,0,-103.891	1/2:35:0,19,1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chr05	2307027	.	G	A	92014.5	PASS	AB=0.569535;ABP=291.409;AC=48;AF=0.255319;AN=188;AO=3933;CIGAR=1X;DP=13209;DPB=13209;DPRA=1.21311;EPP=8543.41;EPPR=20104.3;GTI=3;LEN=1;MEANALT=1.01695;MQM=59.6809;MQMR=59.4632;NS=94;NUMALT=1;ODDS=0.475368;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140393;QR=328111;RO=9273;RPL=1701;RPP=158.685;RPPR=357.865;RPR=2232;RUN=1;SAF=1701;SAP=158.685;SAR=2232;SRF=4021;SRP=357.865;SRR=5252;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:93:39,54:39:1368:54:1936:-146.393,0,-95.1232	0/1:122:45,77:45:1576:77:2755:-211.449,0,-105.382	0/1:246:124,122:124:4440:122:4362:-318.6,0,-325.717	0/0:343:338,4:338:11964:4:144:0,-89.9659,-1061.53	0/1:54:14,40:14:496:40:1440:-113.642,0,-28.7186	0/1:57:22,35:22:784:35:1232:-94.0137,0,-53.7206	0/1:185:90,95:90:3185:95:3380:-248.704,0,-231.146	0/0:222:222,0:222:7812:0:0:0,-66.8287,-702.937	0/1:184:94,90:94:3346:90:3219:-234.364,0,-245.878	0/0:127:127,0:127:4468:0:0:0,-38.2308,-402.238	0/0:63:63,0:63:2252:0:0:0,-18.9649,-201.672	0/0:130:129,1:129:4513:1:32:0,-35.9346,-403.136	0/1:99:49,50:49:1714:50:1783:-130.26,0,-124.562	0/0:84:84,0:84:2945:0:0:0,-25.2865,-265.229	0/0:138:138,0:138:4885:0:0:0,-41.5421,-439.107	0/0:71:71,0:71:2506:0:0:0,-21.3731,-225.736	0/0:59:59,0:59:2074:0:0:0,-17.7608,-186.91	0/0:49:49,0:49:1719:0:0:0,-14.7505,-153.112	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.788	0/1:242:114,128:114:4078:128:4549:-336.681,0,-294.356	0/1:286:99,187:99:3545:187:6687:-515.667,0,-233.075	0/1:173:55,118:55:1976:118:4204:-326.454,0,-125.057	0/1:194:95,99:95:3370:99:3519:-258.478,0,-245.055	0/1:110:96,14:96:3371:14:500:-12.2229,0,-270.317	0/0:98:98,0:98:3440:0:0:0,-29.5009,-309.693	0/0:306:306,0:306:10846:0:0:0,-92.1152,-975.732	0/1:315:148,167:148:5286:167:5966:-442.13,0,-379.838	0/0:46:46,0:46:1636:0:0:0,-13.8474,-146.737	0/1:468:244,224:244:8645:224:8006:-579.584,0,-636.863	0/1:218:91,127:91:3219:127:4547:-343.715,0,-224.296	0/1:180:71,109:71:2535:109:3904:-297.341,0,-174.153	0/1:18:10,8:10:345:8:288:-20.8489,0,-25.9623	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0178	0/1:15:12,3:12:424:3:104:-5.18736,0,-33.981	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:27:10,17:10:352:17:608:-46.9242,0,-23.89	0/0:246:246,0:246:8670:0:0:0,-74.0534,-779.749	0/0:134:134,0:134:4786:0:0:0,-40.338,-429.976	0/0:70:69,1:69:2443:1:36:0,-17.4738,-216.376	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:201:200,1:200:7089:1:36:0,-56.9088,-634.414	0/1:56:30,26:30:1068:26:932:-67.3412,0,-79.5744	0/0:194:194,0:194:6875:0:0:0,-58.3998,-618.735	0/0:98:97,0:97:3429:0:0:0,-29.1999,-308.35	0/0:94:94,0:94:3332:0:0:0,-28.2968,-300.098	0/1:181:66,115:66:2356:115:4113:-315.827,0,-157.804	0/0:158:158,0:158:5596:0:0:0,-47.5627,-503.358	0/1:292:99,193:99:3503:193:6863:-529.804,0,-227.555	0/0:135:135,0:135:4757:0:0:0,-40.639,-428.106	0/0:182:182,0:182:6452:0:0:0,-54.7875,-580.322	0/0:190:187,3:187:6676:3:108:0,-47.1218,-590.327	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:163:163,0:163:5760:0:0:0,-49.0679,-518.361	0/1:98:46,52:46:1635:52:1872:-139.258,0,-117.929	0/1:22:12,10:12:419:10:356:-25.7586,0,-31.42	0/1:214:78,136:78:2754:136:4841:-371.422,0,-183.661	0/0:56:55,1:55:1925:1:36:0,-13.2594,-169.907	0/1:26:9,17:9:320:17:612:-47.582,0,-21.3156	0/1:24:10,14:10:360:14:496:-37.7486,0,-25.5113	0/1:100:40,60:40:1421:60:2152:-163.844,0,-98.0256	0/1:117:57,60:57:2001:60:2152:-158.674,0,-144.513	0/1:17:9,8:9:311:8:288:-21.1499,0,-23.2062	0/1:307:114,193:114:4039:193:6888:-526.103,0,-271.222	0/1:238:83,155:83:2931:155:5535:-426.327,0,-192.357	0/1:155:69,86:69:2433:86:3092:-231.819,0,-172.449	0/1:121:41,80:41:1438:80:2844:-219.755,0,-93.2889	0/0:226:224,2:224:7943:2:72:0,-61.1961,-707.982	0/1:248:66,182:66:2360:182:6536:-513.563,0,-137.999	0/1:58:30,28:30:1052:28:1004:-73.1877,0,-77.5307	0/0:127:127,0:127:4504:0:0:0,-38.2308,-405.482	0/1:66:23,43:23:820:43:1518:-117.034,0,-54.2545	0/1:45:28,17:28:1004:17:612:-41.8625,0,-77.1295	0/0:144:144,0:144:5095:0:0:0,-43.3483,-458.384	0/0:177:177,0:177:6240:0:0:0,-53.2823,-560.628	0/0:266:265,0:265:9397:0:0:0,-79.7729,-844.443	0/0:225:224,1:224:7958:1:36:0,-64.1335,-711.964	0/1:134:51,83:51:1807:83:2949:-225.299,0,-122.526	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.424	0/1:25:9,16:9:309:16:576:-44.6492,0,-20.615	0/0:134:129,5:129:4563:5:180:0,-23.786,-394.138	0/1:222:82,140:82:2861:140:4942:-377.891,0,-190.85	0/0:322:320,2:320:11388:2:72:0,-90.0949,-1017.69	0/1:332:171,161:171:5999:161:5725:-415.344,0,-439.271	0/0:107:106,1:106:3713:1:36:0,-28.6314,-330.792	0/0:87:87,0:87:3055:0:0:0,-26.1896,-274.536	0/1:198:93,105:93:3238:105:3739:-277.089,0,-231.257	0/1:35:18,17:18:631:17:603:-44.0635,0,-46.5346	0/0:92:92,0:92:3234:0:0:0,-27.6948,-291.282	0/0:97:97,0:97:3410:0:0:0,-29.1999,-307.117	0/0:69:69,0:69:2410:0:0:0,-20.7711,-217.112	0/1:116:55,61:55:1950:61:2180:-161.518,0,-140.855	0/1:121:39,82:39:1383:82:2944:-228.751,0,-88.3434	0/0:234:234,0:234:8308:0:0:0,-70.441,-722.276	0/0:179:179,0:179:6289:0:0:0,-53.8844,-565.642
chr05	2307034	.	A	G	242222	PASS	AB=0.430746;ABP=284.826;AC=140;AF=0.744681;AN=188;AO=9148;CIGAR=1X;DP=13021;DPB=13021;DPRA=0;EPP=19850.3;EPPR=8408.78;GTI=3;LEN=1;MEANALT=1.02128;MQM=59.6372;MQMR=59.7006;NS=94;NUMALT=1;ODDS=0.176502;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=324952;QR=138431;RO=3871;RPL=3871;RPP=472.254;RPPR=183.352;RPR=5277;RUN=1;SAF=3869;SAP=474.928;SAR=5279;SRF=1652;SRP=183.352;SRR=2219;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:92:54,38:54:1923:38:1333:-92.386,0,-145.529	0/1:117:75,42:75:2691:42:1491:-99.2537,0,-207.196	0/1:244:123,121:123:4400:121:4344:-317.682,0,-322.579	1/1:331:4,327:4:144:327:11650:-1034.84,-86.3273,0	0/1:53:38,15:38:1351:15:516:-30.8088,0,-105.935	0/1:57:35,22:35:1252:22:770:-52.46,0,-95.7689	0/1:180:91,89:91:3243:89:3175:-231.754,0,-237.883	1/1:215:0,215:0:0:215:7567:-680.939,-64.7215,0	0/1:179:88,91:88:3156:91:3239:-237.758,0,-230.201	1/1:120:0,119:0:0:119:4206:-378.325,-35.8226,0	1/1:61:0,61:0:0:61:2156:-194.288,-18.3628,0	1/1:129:1,128:1:36:128:4575:-408.312,-35.2346,0	0/1:99:50,49:50:1796:49:1735:-126.452,0,-131.431	1/1:86:0,86:0:0:86:3036:-273.412,-25.8886,0	1/1:147:0,147:0:0:147:5207:-468.679,-44.2514,0	1/1:68:0,68:0:0:68:2431:-219.013,-20.47,0	1/1:58:1,57:1:36:57:2036:-179.903,-13.8615,0	1/1:46:0,46:0:0:46:1631:-147.076,-13.8474,0	1/1:66:0,66:0:0:66:2372:-213.663,-19.868,0	0/1:246:130,116:130:4634:116:4155:-300.079,0,-343.129	0/1:277:179,98:179:6412:98:3479:-229.853,0,-493.657	0/1:174:119,55:119:4260:55:1959:-123.595,0,-331.173	0/1:194:100,94:100:3571:94:3347:-242.978,0,-263.156	0/1:110:14,96:14:496:96:3394:-272.393,0,-11.861	1/1:97:0,97:0:0:97:3476:-312.933,-29.1999,0	1/1:306:0,306:0:0:306:10887:-979.427,-92.1152,0	0/1:315:165,150:165:5891:150:5298:-382.041,0,-435.381	1/1:45:0,45:0:0:45:1612:-145.356,-13.5464,0	0/1:460:223,237:223:8000:237:8450:-621.891,0,-581.473	0/1:214:125,89:125:4475:89:3136:-218.01,0,-338.442	0/1:179:107,72:107:3792:72:2567:-177.346,0,-287.568	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	1/1:10:0,10:0:0:10:351:-31.9263,-3.0103,0	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:25:16,9:16:572:9:315:-21.1611,0,-44.2877	1/1:245:0,245:0:0:245:8648:-778.267,-73.7524,0	1/1:128:0,128:0:0:128:4558:-410.257,-38.5318,0	1/1:72:0,72:0:0:72:2545:-229.26,-21.6742,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:198:1,197:1:36:197:7046:-630.534,-56.0057,0	0/1:55:26,29:26:932:29:1044:-77.7182,0,-67.6422	1/1:196:0,196:0:0:196:6973:-627.578,-59.0019,0	1/1:98:0,98:0:0:98:3491:-314.35,-29.5009,0	1/1:91:0,91:0:0:91:3204:-288.582,-27.3937,0	0/1:176:111,65:111:3980:65:2315:-155.62,0,-305.328	1/1:158:0,158:0:0:158:5650:-508.213,-47.5627,0	0/1:287:186,101:186:6645:101:3608:-238.506,0,-511.715	1/1:135:0,135:0:0:135:4786:-430.343,-40.6391,0	1/1:181:0,181:0:0:181:6438:-579.342,-54.4864,0	1/1:188:0,188:0:0:188:6682:-601.366,-56.5936,0	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	1/1:165:0,165:0:0:165:5855:-526.924,-49.67,0	0/1:96:51,45:51:1828:45:1601:-115.478,0,-135.902	0/1:23:10,13:10:360:13:451:-33.9901,0,-25.8206	0/1:209:135,74:135:4823:74:2643:-175.156,0,-371.31	1/1:57:1,56:1:36:56:1982:-175.037,-13.5604,0	0/1:26:21,5:21:756:5:180:-8.72528,0,-60.5358	0/1:24:14,10:14:504:10:351:-24.6937,0,-38.4725	0/1:96:57,39:57:2027:39:1387:-96.1725,0,-153.803	0/1:115:58,57:58:2080:57:2013:-146.819,0,-152.799	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:303:191,112:191:6825:112:3978:-266.992,0,-523.099	0/1:229:145,83:145:5175:83:2925:-194.476,0,-396.581	0/1:153:87,66:87:3108:66:2367:-167.136,0,-233.848	0/1:122:79,43:79:2819:43:1531:-101.338,0,-217.223	1/1:231:2,229:2:72:229:8095:-721.673,-62.7012,0	0/1:243:178,65:178:6369:65:2316:-135.546,0,-500.044	0/1:57:27,30:27:956:30:1076:-79.9941,0,-69.197	1/1:124:0,124:0:0:124:4385:-394.773,-37.3277,0	0/1:67:43,24:43:1544:24:851:-56.7404,0,-119.066	0/1:45:17,28:17:608:28:999:-76.6782,0,-41.501	1/1:141:2,139:2:72:139:4921:-435.817,-35.6085,0	1/1:176:0,176:0:0:176:6282:-565.345,-52.9813,0	1/1:266:1,265:1:36:265:9416:-843.722,-76.4757,0	1/1:222:1,221:1:36:221:7881:-705.658,-63.2304,0	0/1:134:85,49:85:3056:49:1748:-117.22,0,-234.885	1/1:114:0,114:0:0:114:4038:-363.471,-34.3174,0	0/1:25:16,9:16:572:9:320:-21.6166,0,-44.2877	1/1:137:5,132:5:171:132:4686:-405.985,-25.5157,0	0/1:212:135,77:135:4827:77:2720:-181.213,0,-370.535	1/1:322:2,320:2:72:320:11409:-1019.52,-90.0949,0	0/1:332:161,171:161:5767:171:6046:-444.124,0,-419.107	1/1:105:0,105:0:0:105:3753:-337.949,-31.6082,0	1/1:88:0,88:0:0:88:3085:-277.861,-26.4906,0	0/1:193:102,91:102:3628:91:3214:-231.375,0,-268.607	0/1:31:15,16:15:540:16:572:-42.4364,0,-39.6046	1/1:91:0,91:0:0:91:3241:-291.91,-27.3937,0	1/1:99:0,99:0:0:99:3522:-317.189,-29.802,0	1/1:69:0,69:0:0:69:2402:-216.426,-20.7711,0	0/1:118:61,57:61:2192:57:2007:-145.379,0,-161.995	0/1:120:82,38:82:2948:38:1356:-86.2169,0,-229.412	1/1:189:0,189:0:0:189:6703:-603.301,-56.8947,0	1/1:175:0,175:0:0:175:6193:-557.374,-52.6803,0
chr05	2307048	.	C	T	38068.1	PASS	AB=0.552265;ABP=96.7551;AC=47;AF=0.25;AN=188;AO=2193;CIGAR=1X;DP=7428;DPB=7428;DPRA=1.27546;EPP=4739.03;EPPR=11299.1;GTI=4;LEN=1;MEANALT=1.01852;MQM=59.4893;MQMR=59.4133;NS=94;NUMALT=1;ODDS=1.97277;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78362;QR=187250;RO=5234;RPL=2190;RPP=4739.03;RPPR=11316.4;RPR=3;RUN=1;SAF=0;SAP=4765.05;SAR=2193;SRF=2;SRP=11351.1;SRR=5232;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:16,31:16:576:31:1116:-86.4753,0,-37.495	0/1:72:24,48:24:864:48:1701:-131.686,0,-56.3619	0/1:133:62,71:62:2232:71:2524:-187.278,0,-161.106	0/0:204:199,4:199:7128:4:144:0,-48.1537,-627.735	0/1:35:7,28:7:252:28:974:-77.4321,0,-12.4929	0/1:42:11,31:11:392:31:1112:-87.6899,0,-22.9749	0/1:94:45,49:45:1604:49:1741:-128.62,0,-116.329	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.014	0/1:96:45,51:45:1597:51:1817:-134.731,0,-115.074	0/0:52:51,1:51:1828:1:36:0,-12.0748,-161.187	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.5	0/0:73:73,0:73:2615:0:0:0,-21.9752,-235.592	0/1:68:39,29:39:1400:29:1029:-71.7602,0,-105.649	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.342	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.51	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.673	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.762	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6606	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.4837	0/1:144:77,67:77:2764:67:2389:-171.888,0,-205.653	0/1:165:63,102:63:2256:102:3634:-277.475,0,-153.546	0/1:121:42,79:42:1512:79:2823:-217.876,0,-99.3983	0/1:121:61,60:61:2192:60:2150:-157.3,0,-161.05	0/1:65:59,6:59:2112:6:216:-0.223563,0,-170.16	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.745	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.701	0/1:163:90,73:90:3219:73:2624:-187.254,0,-240.427	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2074	0/1:292:149,143:149:5335:143:5106:-371.704,0,-392.078	0/1:114:51,63:51:1816:63:2264:-169.649,0,-129.392	0/1:121:47,74:47:1684:74:2652:-202.474,0,-115.36	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.267	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:7,4:7:243:4:144:-10.0023,0,-18.8957	0/0:133:133,0:133:4759:0:0:0,-40.037,-428.402	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.701	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.223	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:113:112,1:112:4016:1:36:0,-30.4181,-357.963	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/0:122:122,0:122:4356:0:0:0,-36.7257,-392.131	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.552	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:76:30,46:30:1065:46:1656:-126.37,0,-73.2733	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.385	0/1:175:58,117:58:2080:117:4174:-323.142,0,-134.755	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.284	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.307	0/0:99:99,0:99:3529:0:0:0,-29.802,-317.56	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:79:79,0:79:2832:0:0:0,-23.7814,-254.939	0/1:56:28,28:28:1008:28:1004:-73.8182,0,-74.1705	0/1:9:8,1:8:273:1:36:-0.889005,0,-22.1894	0/1:131:57,74:57:2044:74:2637:-198.14,0,-144.752	0/0:40:39,1:39:1400:1:36:0,-8.44292,-122.683	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:19:8,11:8:284:11:396:-30.2623,0,-20.1755	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.5492	0/1:75:39,36:39:1387:36:1270:-91.9954,0,-102.547	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:194:72,122:72:2554:122:4376:-335.605,0,-171.7	0/1:101:29,72:29:1036:72:2561:-199.875,0,-63.1277	0/1:86:46,40:46:1652:40:1432:-103.247,0,-122.955	0/1:63:22,41:22:788:41:1476:-114.171,0,-52.2614	0/0:145:143,2:143:5094:2:72:0,-36.8126,-451.684	0/1:119:35,84:35:1244:84:3020:-236.113,0,-76.4371	0/1:32:17,15:17:603:15:536:-38.9133,0,-44.9665	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.63	0/1:32:12,20:12:432:20:720:-55.4779,0,-29.5882	0/1:24:19,5:19:684:5:180:-9.32734,0,-54.6656	0/0:99:99,0:99:3516:0:0:0,-29.802,-316.332	0/0:88:88,0:88:3126:0:0:0,-26.4906,-281.471	0/0:144:144,0:144:5148:0:0:0,-43.3483,-463.36	0/0:129:128,1:128:4568:1:36:0,-35.2346,-407.632	0/1:71:21,50:21:756:50:1766:-137.845,0,-46.9471	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.855	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/0:65:64,1:64:2292:1:36:0,-15.9687,-202.791	0/1:146:58,88:58:2058:88:3142:-238.834,0,-141.531	0/0:183:183,0:183:6564:0:0:0,-55.0885,-590.493	0/1:281:148,133:148:5277:133:4767:-344.511,0,-390.295	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.594	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.26	0/1:112:50,62:50:1788:62:2220:-166.33,0,-127.482	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9451	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.517	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.23	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.314	0/1:63:30,33:30:1076:33:1188:-88.2349,0,-78.188	0/1:74:27,47:27:964:47:1669:-128.202,0,-64.8006	0/0:127:127,0:127:4537:0:0:0,-38.2308,-408.433	0/0:80:80,0:80:2876:0:0:0,-24.0824,-258.988
chr05	2307058	.	ACG	GCC,ACC	156312	PASS	AB=0.440913,0.555755;ABP=121.309,108.341;AC=142,46;AF=0.755319,0.244681;AN=188;AO=5261,2185;CIGAR=1X1M1X,2M1X;DP=7466;DPB=7466.33;DPRA=0,1.26738;EPP=11427.1,4747.68;EPPR=5.18177;GTI=3;LEN=3,1;MEANALT=1.7766,2.22222;MQM=59.3477,59.5707;MQMR=44;NS=94;NUMALT=2;ODDS=2.31362;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=184794,77946;QR=28;RO=1;RPL=5261,2185;RPP=11427.1,4747.68;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=11427.1,4747.68;SAR=5261,2185;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:49:0,18,31:0:0:18,31:610,1108:-139.61,-90.5995,-85.1809,-49.3547,0,-40.0227	1/2:71:0,23,46:0:0:23,46:822,1648:-201.412,-134.436,-127.512,-67.0101,0,-53.1627	1/2:132:0,62,70:0:0:62,70:2219,2492:-384.277,-203.324,-184.66,-181.31,0,-160.238	1/1:207:0,203,4:0:0:203,4:7100,144:-638.157,-61.1091,0,-626.407,-48.9996,-625.203	1/2:36:0,8,28:0:0:8,28:280,987:-103.494,-80.7142,-78.306,-23.1305,0,-14.7017	1/2:41:0,11,30:0:0:11,30:385,1080:-119.801,-88.4803,-85.169,-31.6728,0,-22.6419	1/2:97:0,45,52:0:0:45,52:1587,1845:-279.866,-150.674,-137.128,-129.545,0,-113.892	1/1:101:0,101,0:0:0:101,0:3571,0:-321.471,-30.404,0,-321.471,-30.404,-321.471	1/2:98:0,46,52:0:0:46,52:1627,1856:-284.019,-151.559,-137.712,-132.814,0,-117.161	1/1:55:0,55,0:0:0:55,0:1902,0:-171.414,-16.5567,0,-171.414,-16.5567,-171.414	1/1:45:0,45,0:0:0:45,0:1616,0:-145.713,-13.5464,0,-145.713,-13.5464,-145.713	1/1:75:0,75,0:0:0:75,0:2664,0:-240.001,-22.5773,0,-240.001,-22.5773,-240.001	1/2:66:0,37,29:0:0:37,29:1318,1044:-192.101,-84.854,-73.7159,-107.604,0,-98.8739	1/1:51:0,51,0:0:0:51,0:1780,0:-160.424,-15.3525,0,-160.424,-15.3525,-160.424	1/1:109:0,109,0:0:0:109,0:3847,0:-346.332,-32.8123,0,-346.332,-32.8123,-346.332	1/1:45:0,45,0:0:0:45,0:1562,0:-140.836,-13.5464,0,-140.836,-13.5464,-140.836	1/1:41:0,40,1:0:0:40,1:1407,36:-126.548,-12.0412,0,-123.61,-8.74396,-123.309	1/1:27:0,27,0:0:0:27,0:947,0:-85.5371,-8.12781,0,-85.5371,-8.12781,-85.5371	1/1:32:0,31,0:0:0:31,0:1067,0:-95.9553,-9.33193,0,-95.9553,-9.33193,-95.9553	1/2:137:0,73,63:0:0:73,63:2594,2248:-394.612,-183.234,-161.259,-211.374,0,-192.409	1/2:167:0,64,103:0:0:64,103:2243,3680:-482.737,-300.284,-281.018,-182.806,0,-151.8	1/2:124:0,43,81:0:0:43,81:1511,2899:-359.053,-236.736,-223.792,-122.669,0,-98.2854	1/2:120:0,60,59:0:0:60,59:2125,2107:-344.777,-171.74,-153.678,-173.033,0,-155.272	1/1:67:0,61,6:0:0:61,6:2126,216:-190.715,-18.3628,0,-173.089,-0.378498,-171.283	1/1:62:0,62,0:0:0:62,0:2167,0:-195.197,-18.6639,0,-195.197,-18.6639,-195.197	1/1:116:0,116,0:0:0:116,0:4051,0:-364.747,-34.9195,0,-364.747,-34.9195,-364.747	1/2:165:0,90,74:0:0:90,74:3200,2643:-475.734,-215.384,-188.292,-260.346,0,-238.07	1/1:12:0,12,0:0:0:12,0:427,0:-38.7546,-3.61236,0,-38.7546,-3.61236,-38.7546	1/2:293:1,152,138:1:28:152,138:5359,4901:-832.932,-397.125,-353.577,-433.92,0,-394.587	1/2:114:0,50,64:0:0:50,64:1762,2288:-330.305,-186.86,-171.808,-143.8,0,-124.534	1/2:121:0,48,72:0:0:48,72:1672,2552:-343.795,-207.877,-193.428,-135.909,0,-114.235	1/2:3:0,1,2:0:0:1,2:34,72:-8.98601,-6.23466,-5.93363,-3.09788,0,-2.49582	1/1:8:0,8,0:0:0:8,0:279,0:-25.4483,-2.40824,0,-25.4483,-2.40824,-25.4483	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:12:0,6,5:0:0:6,5:204,167:-30.1183,-13.5643,-11.7581,-16.5978,0,-15.0927	1/1:134:0,134,0:0:0:134,0:4728,0:-425.619,-40.338,0,-425.619,-40.338,-425.619	1/1:70:0,70,0:0:0:70,0:2463,0:-221.79,-21.0721,0,-221.79,-21.0721,-221.79	1/1:43:0,43,0:0:0:43,0:1510,0:-136.109,-12.9443,0,-136.109,-12.9443,-136.109	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:116:0,115,1:0:0:115,1:4058,36:-365.006,-34.6185,0,-362.068,-31.3212,-361.767	1/2:30:0,16,13:0:0:16,13:556,468:-83.3809,-38.1864,-33.3699,-45.1894,0,-41.276	1/1:121:0,121,0:0:0:121,0:4242,0:-381.879,-36.4246,0,-381.879,-36.4246,-381.879	1/1:63:0,63,0:0:0:63,0:2204,0:-198.484,-18.9649,0,-198.484,-18.9649,-198.484	1/1:35:0,35,0:0:0:35,0:1213,0:-109.469,-10.5361,0,-109.469,-10.5361,-109.469	1/2:77:0,32,45:0:0:32,45:1115,1608:-222.052,-131.391,-121.758,-91.013,0,-77.4667	1/1:79:0,77,0:0:0:77,0:2727,0:-245.225,-23.1793,0,-245.225,-23.1793,-245.225	1/2:170:0,57,113:0:0:57,113:1970,4052:-490.894,-330.833,-313.674,-160.411,0,-126.395	1/1:75:0,75,0:0:0:75,0:2630,0:-236.473,-22.5773,0,-236.473,-22.5773,-236.473	1/1:100:0,99,0:0:0:99,0:3496,0:-314.101,-29.802,0,-314.101,-29.802,-314.101	1/1:102:0,101,0:0:0:101,0:3556,0:-319.71,-30.404,0,-319.71,-30.404,-319.71	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/1:80:0,79,0:0:0:79,0:2773,0:-249.265,-23.7814,0,-249.265,-23.7814,-249.265	1/2:57:0,29,28:0:0:29,28:1031,993:-165.267,-81.2537,-72.5238,-84.3678,0,-75.9389	1/2:8:0,7,1:0:0:7,1:243,36:-23.0393,-3.29724,-1.19003,-20.1003,0,-19.7992	1/2:131:0,56,75:0:0:56,75:1940,2680:-376.511,-218.868,-202.01,-157.994,0,-135.417	1/1:40:0,39,1:0:0:39,1:1338,36:-120.351,-11.7402,0,-117.413,-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chr05	2433710	.	A	G	40757.1	PASS	AB=0.585219;ABP=253.938;AC=47;AF=0.252688;AN=186;AO=2334;CIGAR=1X;DP=7743;DPB=7743;DPRA=1.2034;EPP=5071.23;EPPR=11744.2;GTI=1;LEN=1;MEANALT=1.03846;MQM=59.9949;MQMR=59.9961;NS=93;NUMALT=1;ODDS=3.21795;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83002;QR=189702;RO=5407;RPL=2334;RPP=5071.23;RPPR=11744.2;RPR=0;RUN=1;SAF=2334;SAP=5071.23;SAR=0;SRF=5407;SRP=11744.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:15,15:15:532:15:540:-39.9056,0,-39.1822	0/1:129:30,99:30:1032:99:3552:-281.055,0,-54.3529	0/1:101:33,68:33:1172:68:2413:-187.021,0,-75.3835	0/0:226:225,1:225:7826:1:36:0,-64.4345,-700.794	0/1:31:9,22:9:316:22:776:-60.8302,0,-19.4469	0/1:62:25,37:25:846:37:1318:-100.258,0,-57.784	0/1:157:87,70:87:3053:70:2497:-177.72,0,-227.74	0/0:52:52,0:52:1823:0:0:0,-15.6536,-164.35	0/1:89:34,55:34:1204:55:1940:-148.084,0,-81.8742	0/0:89:89,0:89:3111:0:0:0,-26.7917,-280.219	0/0:80:80,0:80:2793:0:0:0,-24.0824,-251.613	0/0:120:120,0:120:4237:0:0:0,-36.1236,-381.514	0/1:70:41,29:41:1445:29:1022:-71.22,0,-109.272	0/0:140:140,0:140:4871:0:0:0,-42.1442,-438.553	0/0:80:80,0:80:2824:0:0:0,-24.0824,-254.399	0/0:77:77,0:77:2695:0:0:0,-23.1793,-242.795	0/0:44:44,0:44:1525:0:0:0,-13.2453,-137.537	0/0:33:33,0:33:1147:0:0:0,-9.93399,-103.532	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:166:54,112:54:1874:112:4003:-310.488,0,-118.964	0/1:199:85,114:85:3002:114:4030:-302.985,0,-210.508	0/1:81:9,72:9:320:72:2554:-205.727,0,-4.75893	0/1:130:59,71:59:2061:71:2507:-186.747,0,-146.626	0/1:54:45,9:45:1583:9:320:-12.8867,0,-126.504	0/0:37:37,0:37:1300:0:0:0,-11.1381,-117.301	0/0:192:192,0:192:6759:0:0:0,-57.7978,-608.396	0/1:176:81,95:81:2831:95:3391:-252.424,0,-202.048	0/0:35:35,0:35:1223:0:0:0,-10.536,-110.373	0/1:254:97,157:97:3410:157:5609:-428.47,0,-230.657	0/1:162:71,91:71:2501:91:3254:-244.291,0,-176.576	0/1:147:51,96:51:1808:96:3406:-262.502,0,-118.75	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:8:5,3:5:161:3:108:-7.66693,0,-12.3983	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:7,3:7:239:3:108:-7.06487,0,-18.8324	0/0:189:188,1:188:6606:1:36:0,-53.2964,-591.034	0/0:45:45,0:45:1584:0:0:0,-13.5463,-142.85	0/0:52:52,0:52:1818:0:0:0,-15.6536,-163.9	.:.:.:.:.:.:.:.	0/0:139:137,2:137:4851:2:72:0,-35.0064,-429.91	0/1:32:22,10:22:766:10:360:-23.1113,0,-59.6255	0/0:77:76,1:76:2694:1:32:0,-19.98,-239.505	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.009	0/0:71:71,0:71:2501:0:0:0,-21.3731,-225.342	0/1:132:37,95:37:1304:95:3389:-265.49,0,-77.9254	0/0:25:25,0:25:868:0:0:0,-7.52575,-78.433	0/1:165:39,126:39:1374:126:4446:-350.642,0,-74.2872	0/0:45:45,0:45:1591:0:0:0,-13.5463,-143.48	0/0:64:64,0:64:2251:0:0:0,-19.2659,-202.854	0/0:63:63,0:63:2222:0:0:0,-18.9649,-200.244	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:38:38,0:38:1325:0:0:0,-11.4391,-119.547	0/1:81:35,46:35:1228:46:1656:-124.945,0,-86.4404	0/1:18:13,5:13:460:5:172:-10.3994,0,-36.3168	0/1:102:36,66:36:1254:66:2330:-179.252,0,-82.4556	0/0:23:23,0:23:801:0:0:0,-6.92369,-72.4067	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:14:5,9:5:172:9:306:-23.6542,0,-11.6036	0/1:82:42,39:42:1496:39:1383:-100.025,0,-110.191	0/1:117:56,61:56:1954:61:2176:-160.886,0,-140.912	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/0:179:179,0:179:6294:0:0:0,-53.8844,-566.564	0/1:187:80,107:80:2825:107:3835:-289.052,0,-198.197	0/1:94:28,66:28:996:66:2340:-182.561,0,-61.6581	0/1:67:15,51:15:531:51:1811:-143.043,0,-27.8945	0/0:56:56,0:56:1952:0:0:0,-16.8577,-175.954	0/1:81:20,61:20:692:61:2179:-171.992,0,-38.2179	0/1:43:36,7:36:1249:7:252:-10.0847,0,-99.7654	0/0:27:27,0:27:937:0:0:0,-8.12781,-84.6411	0/1:54:22,32:22:771:32:1140:-86.6536,0,-53.4547	0/1:28:21,7:21:752:7:248:-14.2354,0,-59.5774	0/0:150:150,0:150:5242:0:0:0,-45.1545,-471.769	0/0:73:73,0:73:2571:0:0:0,-21.9752,-231.641	0/0:110:110,0:110:3849:0:0:0,-33.1133,-346.613	0/0:118:118,0:118:4150:0:0:0,-35.5215,-373.687	0/1:106:21,85:21:752:85:3044:-242.281,0,-36.0971	0/0:130:130,0:130:4570:0:0:0,-39.1339,-411.471	0/1:12:6,6:6:216:6:203:-14.988,0,-16.1782	0/0:69:68,1:68:2373:1:36:0,-17.1728,-210.228	0/1:76:33,43:33:1180:43:1523:-114.484,0,-83.6298	0/0:141:141,0:141:4960:0:0:0,-42.4452,-446.557	0/1:85:36,49:36:1276:49:1724:-129.855,0,-89.5555	0/0:64:64,0:64:2207:0:0:0,-19.2659,-198.894	0/0:52:52,0:52:1838:0:0:0,-15.6536,-165.699	0/1:127:80,47:80:2820:47:1660:-111.454,0,-215.808	0/1:29:13,16:13:464:16:572:-43.0836,0,-33.3676	0/0:74:74,0:74:2583:0:0:0,-22.2762,-232.719	0/0:93:93,0:93:3277:0:0:0,-27.9958,-295.152	0/0:66:66,0:66:2293:0:0:0,-19.868,-206.629	0/1:113:87,26:87:3007:26:914:-48.5583,0,-236.847	0/1:55:16,39:16:572:39:1387:-108.572,0,-35.2568	0/0:125:125,0:125:4352:0:0:0,-37.6287,-391.86	0/0:95:95,0:95:3313:0:0:0,-28.5978,-298.394
chr05	2619425	.	T	A	26515.5	PASS	AB=0.525804;ABP=12.536;AC=121;AF=0.643617;AN=188;AO=4083;CIGAR=1X;DP=5203;DPB=5203;DPRA=0;EPP=8869.13;EPPR=2426.37;GTI=63;LEN=1;MEANALT=1.04255;MQM=18.5354;MQMR=13.5314;NS=94;NUMALT=1;ODDS=15.6499;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144731;QR=39913;RO=1116;RPL=0;RPP=8869.13;RPPR=2426.37;RPR=4083;RUN=1;SAF=0;SAP=8869.13;SAR=4083;SRF=0;SRP=2426.37;SRR=1116;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:123:10,113:10:360:113:3991:-171.083,-24.5863,0	1/1:132:10,122:10:360:122:4332:-191.722,-26.861,0	1/1:174:16,158:16:576:158:5581:-228.332,-33.5591,0	0/1:40:27,13:27:968:13:441:-9.57014,0,-19.7135	0/1:10:4,6:4:144:6:212:-5.84725,0,-1.42372	1/1:87:5,82:5:180:82:2932:-135.806,-20.2191,0	0/1:36:13,23:13:468:23:800:-24.704,0,-4.29777	1/1:213:22,191:22:792:191:6776:-285.267,-35.1183,0	1/1:159:10,149:10:360:149:5313:-227.712,-35.6018,0	0/1:39:19,20:19:680:20:716:-21.1332,0,-13.9022	0/1:30:15,15:15:536:15:524:-15.9698,0,-9.50318	1/1:149:14,135:14:485:135:4799:-195.794,-25.2446,0	1/1:97:9,88:9:324:88:3106:-131.16,-16.8934,0	0/1:42:12,30:12:428:30:1064:-37.6154,0,-1.39382	0/1:18:12,6:12:428:6:204:-4.05636,0,-8.00374	0/1:34:16,18:16:561:18:632:-19.76,0,-9.93086	1/1:228:15,213:15:536:213:7541:-337.528,-49.3304,0	1/1:74:7,67:7:252:67:2400:-104.404,-13.9694,0	1/1:35:4,31:4:144:31:1090:-44.8838,-2.96361,0	0/1:26:14,12:14:504:12:420:-12.4733,0,-9.54243	0/1:49:17,32:17:612:32:1123:-35.9343,0,-3.70463	0/1:9:5,4:5:180:4:140:-2.54053,0,-4.66253	0/1:20:11,9:11:396:9:320:-8.47833,0,-6.95877	0/1:37:18,19:18:644:19:672:-18.3448,0,-8.48348	0/1:19:7,12:7:252:12:419:-13.784,0,-2.31342	0/0:14:12,2:12:432:2:68:0,-1.00207,-10.9352	0/1:44:13,31:13:460:31:1092:-34.7762,0,-2.79864	0/1:24:13,11:13:468:11:396:-10.3492,0,-6.64479	0/1:18:8,10:8:288:10:356:-10.7138,0,-4.0564	0/1:21:13,8:13:464:8:280:-5.67056,0,-10.7044	0/1:48:23,25:23:813:25:883:-23.7555,0,-12.3144	0/1:2:1,1:1:36:1:36:-1.09261,0,-0.596323	0/1:9:5,4:5:180:4:144:-3.46908,0,-2.80329	1/1:87:0,87:0:0:87:3104:-151.655,-26.1896,0	1/1:59:3,56:3:108:56:1999:-88.6615,-13.0355,0	1/1:67:9,58:9:324:58:2067:-85.697,-8.46086,0	0/1:16:9,7:9:324:7:244:-8.53822,0,-5.82661	0/1:39:19,20:19:684:20:720:-23.2876,0,-8.87202	1/1:129:17,112:17:612:112:3999:-149.27,-15.4741,0	0/1:10:5,5:5:180:5:172:-5.73997,0,-2.50226	0/1:51:26,25:26:917:25:876:-25.198,0,-12.7539	0/1:11:5,6:5:180:6:216:-5.82465,0,-2.10956	0/1:43:19,24:19:684:24:840:-27.2434,0,-7.6679	0/1:63:37,26:37:1332:26:902:-20.671,0,-25.9719	0/1:49:18,31:18:644:31:1082:-31.9753,0,-7.9501	0/1:12:5,7:5:180:7:248:-7.31387,0,-4.0378	1/1:108:13,95:13:468:95:3390:-147.254,-13.6003,0	0/1:35:20,15:20:712:15:517:-12.2307,0,-12.6806	0/1:27:11,16:11:396:16:572:-19.2029,0,-5.4801	0/1:22:14,8:14:504:8:288:-8.83254,0,-11.7894	0/1:25:17,8:17:593:8:276:-4.90856,0,-13.0327	0/0:6:5,1:5:180:1:32:0,-0.119435,-5.68841	1/1:199:22,176:22:777:176:6263:-268.213,-34.0148,0	0/1:6:4,2:4:144:2:72:-1.60105,0,-2.99619	1/1:42:4,38:4:144:38:1355:-63.1014,-7.84089,0	0/1:34:13,21:13:468:21:713:-26.1916,0,-5.32842	0/1:19:9,10:9:320:10:343:-11.331,0,-4.92069	1/1:4:0,4:0:0:4:140:-6.35417,-1.20412,0	0/0:9:8,1:8:284:1:36:0,-1.11348,-7.87633	0/1:17:7,10:7:252:10:351:-11.1584,0,-4.34567	0/1:35:23,12:23:828:12:424:-9.59521,0,-16.461	0/1:2:1,1:1:36:1:36:-1.19122,0,-0.695877	0/1:34:19,15:19:669:15:524:-12.0673,0,-12.0362	0/1:38:17,21:17:597:21:743:-20.8172,0,-8.13482	0/1:9:5,4:5:180:4:140:-3.73422,0,-2.80329	0/1:31:15,15:15:540:15:524:-17.6129,0,-9.46041	0/1:26:10,16:10:352:16:568:-18.242,0,-3.88821	0/1:37:16,21:16:572:21:739:-20.2897,0,-8.93233	0/1:3:1,2:1:36:2:63:-3.03101,0,-0.295293	1/1:223:24,198:24:864:198:7007:-295.291,-35.878,0	0/1:20:10,10:10:356:10:348:-9.63834,0,-5.78781	0/1:8:4,4:4:144:4:144:-3.95326,0,-2.30204	1/1:183:7,176:7:252:176:6229:-275.444,-46.7817,0	1/1:105:1,104:1:36:104:3684:-171.281,-30.3102,0	0/1:42:18,24:18:640:24:856:-24.6182,0,-7.94446	0/1:26:13,13:13:453:13:464:-13.0763,0,-7.43547	1/1:58:7,51:7:248:51:1820:-76.0724,-7.57758,0	1/1:74:6,68:6:216:68:2409:-100.982,-14.066,0	1/1:18:4,14:4:144:14:500:-21.1809,-0.616172,0	0/1:18:10,8:10:360:8:284:-7.12425,0,-5.57734	1/1:187:17,170:17:604:170:6071:-266.272,-34.9727,0	0/1:38:22,16:22:792:16:568:-14.9505,0,-15.267	0/1:25:8,17:8:288:17:600:-19.2038,0,-3.61514	0/1:20:10,10:10:356:10:356:-10.1777,0,-5.78781	1/1:76:19,57:19:684:57:2006:-69.4579,-0.824125,0	0/1:45:19,26:19:676:26:906:-28.8045,0,-8.77256	1/1:116:7,108:7:252:108:3846:-173.633,-26.4414,0	1/1:142:11,131:11:396:131:4659:-196.629,-28.7042,0	1/1:179:18,161:18:644:161:5705:-230.581,-28.5351,0	0/1:12:6,6:6:216:6:216:-5.79848,0,-2.97875	0/1:24:8,16:8:288:16:572:-18.1166,0,-2.50487	0/1:11:4,7:4:144:7:248:-7.61749,0,-1.49104	0/1:44:18,26:18:644:26:920:-27.3318,0,-7.90825	0/1:45:19,26:19:684:26:932:-27.3942,0,-8.77817
chr05	2805623	.	G	A	273523	PASS	AB=0.478125;ABP=26.9508;AC=144;AF=0.765957;AN=188;AO=10127;CIGAR=1X;DP=13169;DPB=13169;DPRA=0;EPP=21993.5;EPPR=6584.74;GTI=0;LEN=1;MEANALT=1.10638;MQM=59.9725;MQMR=59.9914;NS=94;NUMALT=1;ODDS=0.233602;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=359564;QR=107112;RO=3031;RPL=4405;RPP=374.926;RPPR=39.2791;RPR=5722;RUN=1;SAF=4405;SAP=374.926;SAR=5722;SRF=1403;SRP=39.2791;SRR=1628;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:31,30:31:1104:30:1061:-77.4365,0,-81.3078	1/1:106:0,106:0:0:106:3721:-335.09,-31.9092,0	0/1:215:115,100:115:4038:100:3583:-257.944,0,-298.888	1/1:325:0,325:0:0:325:11517:-1036.41,-97.8348,0	1/1:67:1,66:1:32:66:2357:-209.188,-16.9697,0	1/1:62:0,62:0:0:62:2202:-198.443,-18.6639,0	0/1:132:82,50:82:2909:50:1768:-119.665,0,-222.203	1/1:226:2,224:2:72:224:7951:-708.781,-61.1961,0	0/1:171:75,96:75:2638:96:3408:-255.457,0,-186.189	1/1:151:0,151:0:0:151:5368:-483.252,-45.4555,0	1/1:96:0,96:0:0:96:3356:-302.255,-28.8989,0	1/1:219:0,219:0:0:219:7756:-698.008,-65.9256,0	0/1:133:61,72:61:2149:72:2551:-189.804,0,-153.639	1/1:99:0,99:0:0:99:3458:-311.435,-29.802,0	1/1:103:0,103:0:0:103:3657:-329.335,-31.0061,0	1/1:115:0,115:0:0:115:4068:-366.309,-34.6185,0	1/1:88:1,87:1:27:87:3069:-273.741,-23.7909,0	1/1:58:0,58:0:0:58:2059:-185.581,-17.4597,0	1/1:89:0,89:0:0:89:3146:-283.366,-26.7917,0	0/1:231:100,131:100:3515:131:4660:-350.025,0,-247.022	0/1:241:118,123:118:4193:123:4395:-323.176,0,-305.002	0/1:106:78,28:78:2738:28:999:-58.3153,0,-214.753	0/1:188:86,102:86:3057:102:3636:-270.851,0,-218.765	1/1:113:4,109:4:140:109:3873:-335.81,-21.0718,0	1/1:123:2,121:2:72:121:4282:-378.72,-30.19,0	1/1:344:1,343:1:36:343:12099:-1084.87,-99.956,0	0/1:321:155,164:155:5476:164:5842:-429.609,0,-396.694	1/1:64:0,64:0:0:64:2261:-203.752,-19.2659,0	0/1:427:217,208:217:7647:208:7426:-540.155,0,-560.043	0/1:174:108,66:108:3812:66:2352:-159.56,0,-290.895	0/1:196:108,88:108:3852:88:3139:-223.733,0,-287.873	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:13:9,4:9:316:4:140:-9.03119,0,-24.8655	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:27:12,15:12:419:15:524:-39.3618,0,-29.9149	1/1:344:0,344:0:0:344:12259:-1103.15,-103.554,0	1/1:198:2,196:2:72:196:6873:-611.806,-52.7672,0	1/1:120:0,120:0:0:120:4256:-383.22,-36.1236,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:176:0,176:0:0:176:6291:-566.284,-52.9813,0	0/1:48:35,13:35:1200:13:456:-26.9238,0,-93.8475	1/1:164:3,161:3:108:161:5750:-507.524,-39.2938,0	1/1:127:1,126:1:36:126:4479:-399.676,-34.6325,0	1/1:116:0,116:0:0:116:4133:-372.154,-34.9195,0	0/1:155:79,76:79:2825:76:2666:-193.522,0,-207.828	1/1:90:0,90:0:0:90:3201:-288.313,-27.0927,0	0/1:213:98,115:98:3454:115:4111:-306.054,0,-246.954	1/1:160:0,160:0:0:160:5729:-515.723,-48.1648,0	1/1:259:0,259:0:0:259:9207:-828.6,-77.9668,0	1/1:146:0,146:0:0:146:5157:-464.273,-43.9504,0	0/1:16:7,9:7:237:9:324:-24.6894,0,-16.8426	1/1:134:1,133:1:36:133:4743:-423.43,-36.7397,0	0/1:94:46,48:46:1621:48:1697:-124.718,0,-117.88	0/1:9:3,6:3:108:6:207:-16.2576,0,-7.3659	0/1:180:90,90:90:3154:90:3162:-230.619,0,-229.898	1/1:78:0,77:0:0:77:2760:-248.321,-23.1793,0	0/1:14:8,6:8:288:6:201:-14.2026,0,-22.053	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	0/1:146:68,78:68:2425:78:2745:-203.34,0,-174.554	0/1:149:84,64:84:2978:64:2296:-162.127,0,-223.479	0/1:16:11,5:11:388:5:180:-11.7356,0,-30.4409	1/1:256:3,253:3:108:253:9000:-799.904,-66.9885,0	0/1:293:143,149:143:5046:149:5325:-391.122,0,-366.027	0/1:114:65,49:65:2332:49:1748:-123.287,0,-175.822	0/1:107:56,50:56:1985:50:1775:-127.763,0,-146.654	1/1:232:3,229:3:108:229:8076:-716.786,-59.7638,0	0/1:189:142,47:142:5027:47:1688:-95.3123,0,-395.685	0/1:66:37,29:37:1297:29:1039:-73.9564,0,-97.1609	1/1:91:0,91:0:0:91:3252:-292.901,-27.3937,0	0/1:86:47,39:47:1667:39:1380:-98.6088,0,-124.428	0/1:24:8,16:8:280:16:553:-42.8693,0,-18.3146	1/1:155:0,155:0:0:155:5506:-495.666,-46.6597,0	1/1:120:0,120:0:0:120:4252:-382.858,-36.1236,0	1/1:282:0,282:0:0:282:10030:-902.639,-84.8905,0	1/1:238:0,238:0:0:238:8450:-760.499,-71.6451,0	0/1:122:64,58:64:2252:58:2051:-148.136,0,-166.216	1/1:161:1,160:1:36:160:5709:-510.331,-44.8676,0	0/1:18:11,7:11:381:7:244:-16.8809,0,-29.2021	1/1:104:1,103:1:32:103:3652:-325.687,-28.1078,0	0/1:169:87,82:87:3085:82:2932:-213.241,0,-227.004	1/1:295:2,293:2:57:293:10440:-934.108,-83.3905,0	0/1:117:62,55:62:2208:55:1931:-138.843,0,-163.765	0/1:93:45,48:45:1612:48:1692:-124.568,0,-117.374	1/1:94:0,94:0:0:94:3326:-299.557,-28.2968,0	0/1:269:123,146:123:4356:146:5212:-388.241,0,-311.24	0/1:49:29,20:29:1032:20:710:-49.475,0,-78.443	1/1:137:0,137:0:0:137:4850:-436.649,-41.2411,0	1/1:122:1,118:1:36:118:4175:-372.334,-32.5841,0	1/1:59:0,59:0:0:59:2100:-189.27,-17.7608,0	0/1:196:99,97:99:3470:97:3442:-250.988,0,-253.512	0/1:151:92,59:92:3245:59:2078:-141.832,0,-246.815	1/1:254:1,253:1:36:253:8998:-806.203,-72.8633,0	1/1:234:2,232:2:72:232:8269:-737.386,-63.6043,0
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chr05	2844506	.	T	C	44968.3	PASS	AB=0.508253;ABP=6.09287;AC=44;AF=0.234043;AN=188;AO=2684;CIGAR=1X;DP=11805;DPB=11805;DPRA=1.28263;EPP=5831.24;EPPR=19789.5;GTI=2;LEN=1;MEANALT=1.01639;MQM=59.9654;MQMR=59.975;NS=94;NUMALT=1;ODDS=1.42673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95642;QR=326862;RO=9120;RPL=2684;RPP=5831.24;RPPR=19789.5;RPR=0;RUN=1;SAF=0;SAP=5831.24;SAR=2684;SRF=0;SRP=19806.8;SRR=9120;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:123:48,75:48:1724:75:2658:-202.437,0,-118.419	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/1:214:101,113:101:3620:113:4044:-299.727,0,-261.585	0/0:445:444,1:444:15883:1:36:0,-130.363,-1425.56	0/0:98:96,2:96:3433:2:72:0,-22.6642,-302.345	0/0:21:20,1:20:720:1:36:0,-2.72335,-61.3398	0/1:75:40,35:40:1440:35:1256:-90.768,0,-107.32	0/0:212:212,0:212:7562:0:0:0,-63.8184,-680.62	0/1:168:86,82:86:3073:82:2905:-211.11,0,-226.215	0/0:98:97,1:97:3480:1:36:0,-25.9027,-309.813	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.732	0/1:93:45,48:45:1616:48:1716:-126.73,0,-117.689	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:127:127,0:127:4530:0:0:0,-38.2308,-407.865	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:225:101,124:101:3612:124:4408:-329.157,0,-257.555	0/1:257:124,132:124:4440:132:4720:-347.48,0,-322.347	0/1:192:60,132:60:2145:132:4708:-366.067,0,-135.518	0/1:187:105,82:105:3757:82:2928:-207.463,0,-282.035	0/0:105:102,3:102:3645:3:108:0,-21.533,-318.178	0/0:142:139,3:139:4977:3:108:0,-32.6711,-437.973	0/0:349:347,2:347:12449:2:72:0,-98.2227,-1113.4	0/1:271:153,118:153:5477:118:4212:-297.683,0,-411.476	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:352:200,152:200:7184:152:5401:-380.259,0,-540.65	0/1:169:77,92:77:2764:92:3277:-244.275,0,-198.127	0/1:191:90,101:90:3213:101:3587:-265.543,0,-231.895	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:9:8,1:8:284:1:21:0,-0.609324,-23.8034	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:222:221,1:221:7944:1:32:0,-63.6293,-711.78	0/0:178:178,0:178:6380:0:0:0,-53.5833,-574.159	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:130:129,1:129:4636:1:36:0,-35.5356,-413.795	0/1:46:27,19:27:968:19:676:-47.3206,0,-73.59	0/0:241:240,1:240:8582:1:36:0,-68.95,-768.776	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:217:102,115:102:3668:115:4092:-303.142,0,-264.998	0/0:173:173,0:173:6220:0:0:0,-52.0782,-559.893	0/1:198:87,111:87:3113:111:3952:-296.268,0,-219.935	0/0:115:115,0:115:4092:0:0:0,-34.6184,-368.379	0/0:157:157,0:157:5640:0:0:0,-47.2617,-507.718	0/0:158:158,0:158:5640:0:0:0,-47.5627,-507.723	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:173:173,0:173:6204:0:0:0,-52.0782,-558.326	0/1:84:32,52:32:1152:52:1851:-141.583,0,-78.7036	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:173:90,83:90:3228:83:2964:-214.915,0,-238.663	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:95:52,43:52:1856:43:1532:-109.575,0,-138.722	0/1:134:60,74:60:2152:74:2636:-197.149,0,-153.609	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:238:238,0:238:8544:0:0:0,-71.6451,-768.955	0/1:263:142,121:142:5076:121:4326:-310.344,0,-377.814	0/1:62:36,26:36:1277:26:928:-65.1744,0,-96.5672	0/1:213:115,98:115:4132:98:3508:-251.809,0,-307.943	0/0:216:212,4:212:7601:4:144:0,-51.7089,-670.811	0/1:208:80,128:80:2849:128:4580:-349.745,0,-194.033	0/1:42:25,17:25:900:17:599:-41.5948,0,-68.6778	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:50:20,30:20:716:30:1080:-82.4618,0,-49.7162	0/1:18:13,5:13:464:5:176:-10.7665,0,-36.679	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.444	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/0:258:258,0:258:9233:0:0:0,-77.6657,-830.938	0/0:219:219,0:219:7872:0:0:0,-65.9256,-708.502	0/1:136:71,65:71:2552:65:2304:-166.679,0,-188.99	0/0:197:196,1:196:7032:1:36:0,-55.7046,-629.342	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/0:148:147,1:147:5261:1:36:0,-40.9542,-470.026	0/1:127:63,64:63:2237:64:2289:-168.03,0,-162.871	0/0:324:323,1:323:11597:1:36:0,-93.9354,-1039.99	0/1:85:43,42:43:1544:42:1504:-110.067,0,-113.666	0/1:72:37,35:37:1328:35:1244:-90.5905,0,-98.0183	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.562	0/1:156:70,86:70:2520:86:3026:-225.61,0,-180.09	0/1:28:13,15:13:464:15:540:-40.5077,0,-33.6687	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.957	0/0:87:86,1:86:3084:1:36:0,-22.5913,-274.189	0/0:54:53,1:53:1904:1:36:0,-12.6573,-168.039	0/1:144:79,65:79:2828:65:2320:-165.712,0,-211.411	0/1:83:40,43:40:1428:43:1522:-112.286,0,-103.832	0/0:198:197,1:197:7068:1:36:0,-56.0057,-632.58	0/0:153:153,0:153:5492:0:0:0,-46.0576,-494.405
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chr05	2898054	.	G	T	52534.4	PASS	AB=0.491171;ABP=4.04562;AC=139;AF=0.747312;AN=186;AO=2485;CIGAR=1X;DP=3279;DPB=3279;DPRA=3.55326;EPP=5399.12;EPPR=1709.83;GTI=3;LEN=1;MEANALT=1;MQM=59.9453;MQMR=59.995;NS=93;NUMALT=1;ODDS=1.84753;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89034;QR=28424;RO=794;RPL=0;RPP=5399.12;RPPR=1709.83;RPR=2485;RUN=1;SAF=0;SAP=5399.12;SAR=2485;SRF=0;SRP=1727.16;SRR=794;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:56:26,30:26:928:30:1072:-79.9348,0,-66.9806	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:43:19,24:19:675:24:845:-63.4228,0,-48.1327	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:43:29,14:29:1044:14:504:-32.7538,0,-81.3305	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:12:0,12:0:0:12:424:-38.4958,-3.61236,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:9:0,9:0:0:9:324:-29.5012,-2.70927,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:55:25,30:25:887:30:1076:-80.5962,0,-63.5915	0/1:42:24,18:24:864:18:648:-46.0086,0,-65.4393	0/1:45:37,8:37:1311:8:280:-11.993,0,-104.745	0/1:54:27,27:27:972:27:972:-71.5423,0,-71.5423	1/1:35:1,34:1:36:34:1216:-106.14,-6.93778,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	1/1:120:0,120:0:0:120:4316:-388.605,-36.1236,0	0/1:67:35,32:35:1256:32:1152:-83.8211,0,-93.1763	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:98:49,49:49:1764:49:1760:-129.183,0,-129.543	0/1:67:38,29:38:1368:29:1044:-74.1012,0,-103.252	0/1:40:24,16:24:864:16:576:-40.1338,0,-66.0414	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:81:0,81:0:0:81:2905:-261.684,-24.3834,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	.:.:.:.:.:.:.:.	1/1:90:3,87:3:108:87:3114:-270.412,-17.0175,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:13:0,13:0:0:13:468:-42.3291,-3.91339,0	0/1:44:16,28:16:576:28:981:-75.3557,0,-38.9297	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:46:25,21:25:900:21:756:-54.5198,0,-67.4736	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:75:1,74:1:32:74:2635:-234.196,-19.3779,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:69:0,69:0:0:69:2484:-223.813,-20.7711,0	0/1:36:19,17:19:675:17:612:-44.5764,0,-50.2399	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:47:23,24:23:816:24:856:-63.2081,0,-59.6133	0/1:21:2,19:2:72:19:684:-55.5495,0,-0.515092	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:13:6,7:6:207:7:252:-19.1156,0,-15.0535	0/1:39:17,22:17:612:22:780:-58.7829,0,-43.6733	0/1:39:17,22:17:608:22:787:-59.4143,0,-43.3119	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:106:43,63:43:1540:63:2268:-172.46,0,-106.984	0/1:24:15,9:15:531:9:324:-22.2811,0,-40.8972	0/1:22:12,10:12:428:10:360:-26.1216,0,-32.2361	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	0/1:73:42,31:42:1508:31:1093:-76.7025,0,-114.037	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:19:0,19:0:0:19:650:-58.8164,-5.71957,0	0/1:24:17,7:17:608:7:252:-15.8042,0,-47.8273	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	1/1:76:0,76:0:0:76:2696:-242.455,-22.8783,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:116:0,116:0:0:116:4160:-374.582,-34.9195,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:61:26,35:26:923:35:1260:-95.3427,0,-65.0239	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:49:24,25:24:860:25:900:-66.5705,0,-62.9714	1/1:114:0,114:0:0:114:4072:-366.667,-34.3174,0	0/1:34:19,15:19:671:15:536:-38.326,0,-50.4808	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:26:12,14:12:432:14:496:-37.1475,0,-31.3944	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0
chr05	2906604	.	T	C	112588	PASS	AB=0.460261;ABP=49.2629;AC=142;AF=0.763441;AN=186;AO=5158;CIGAR=1X;DP=6992;DPB=6992;DPRA=0;EPP=11160.1;EPPR=3948.62;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9891;MQMR=59.9923;NS=93;NUMALT=1;ODDS=0.141025;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184008;QR=65507;RO=1829;RPL=5054;RPP=10318.3;RPPR=3535.81;RPR=104;RUN=1;SAF=5059;SAP=10360.1;SAR=99;SRF=1776;SRP=3527.62;SRR=53;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:23,11:23:824:11:396:-25.7477,0,-64.2483	1/1:108:0,108:0:0:108:3868:-348.315,-32.5112,0	0/1:79:33,46:33:1184:46:1644:-124.467,0,-83.0869	1/1:169:0,169:0:0:169:6024:-542.265,-50.8741,0	0/1:108:76,32:76:2715:32:1129:-69.4051,0,-212.082	0/1:57:25,32:25:900:32:1125:-84.3973,0,-64.1623	0/1:140:83,57:83:2973:57:2044:-142.088,0,-225.656	1/1:81:0,81:0:0:81:2873:-258.807,-24.3834,0	0/1:78:38,40:38:1360:40:1432:-105.697,0,-99.2203	1/1:76:0,76:0:0:76:2716:-244.636,-22.8783,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:36:1,35:1:36:35:1256:-109.747,-7.23881,0	0/1:33:12,21:12:432:21:738:-56.8074,0,-29.2872	1/1:36:0,36:0:0:36:1261:-113.79,-10.8371,0	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:243:117,126:117:4204:126:4527:-334.445,0,-305.389	0/1:118:63,55:63:2241:55:1968:-141.874,0,-166.431	0/1:156:101,55:101:3632:55:1958:-129.533,0,-280.123	0/1:71:38,33:38:1349:33:1184:-85.4952,0,-100.335	1/1:55:3,52:3:108:52:1839:-155.715,-6.48148,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:328:0,328:0:0:328:11682:-1051.25,-98.7378,0	0/1:155:90,65:90:3224:65:2323:-162.67,0,-243.722	1/1:18:1,17:1:36:17:604:-51.0923,-1.82027,0	0/1:339:190,147:190:6817:147:5251:-370.985,0,-511.854	0/1:107:60,47:60:2152:47:1692:-120.357,0,-161.737	0/1:103:48,55:48:1724:55:1963:-145.938,0,-124.437	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:106:0,106:0:0:106:3740:-336.8,-31.9092,0	1/1:141:1,140:1:36:140:4977:-444.483,-38.847,0	1/1:44:0,44:0:0:44:1537:-138.616,-13.2453,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:90:2,87:2:72:87:3094:-271.853,-20.3148,0	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	1/1:122:0,122:0:0:122:4348:-391.495,-36.7257,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:79:36,43:36:1296:43:1532:-114.392,0,-93.1626	1/1:81:0,81:0:0:81:2875:-258.985,-24.3834,0	0/1:204:104,100:104:3711:100:3580:-260.997,0,-272.78	1/1:62:0,62:0:0:62:2207:-198.894,-18.6639,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:158:1,157:1:36:157:5616:-501.964,-43.9645,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:112:0,112:0:0:112:3992:-359.47,-33.7154,0	0/1:37:18,19:18:639:19:684:-50.7522,0,-46.7001	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:126:84,42:84:3020:42:1508:-98.0848,0,-234.1	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	.:.:.:.:.:.:.:.	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:51:17,33:17:612:33:1180:-91.2034,0,-40.1058	0/1:74:39,35:39:1404:35:1243:-89.893,0,-104.383	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:178:0,178:0:0:178:6326:-569.434,-53.5833,0	0/1:210:103,107:103:3666:107:3828:-281.501,0,-266.921	0/1:44:24,20:24:864:20:720:-51.8835,0,-64.8372	0/1:63:42,21:42:1485:21:735:-47.5065,0,-114.978	1/1:161:2,158:2:72:158:5652:-501.964,-41.6879,0	0/1:92:58,34:58:2084:34:1220:-82.412,0,-160.135	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:96:0,96:0:0:96:3416:-307.653,-28.8989,0	0/1:51:27,24:27:964:24:860:-62.3693,0,-71.7243	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	1/1:94:0,94:0:0:94:3335:-300.369,-28.2968,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:128:1,127:1:32:127:4560:-407.365,-35.3325,0	1/1:128:0,128:0:0:128:4553:-409.934,-38.5318,0	0/1:124:62,62:62:2228:62:2220:-162.737,0,-163.456	1/1:26:0,26:0:0:26:918:-82.9353,-7.82678,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:51:35,16:35:1252:16:559:-35.2851,0,-97.6325	1/1:222:0,222:0:0:222:7926:-713.363,-66.8287,0	0/1:66:34,32:34:1207:32:1148:-83.7619,0,-89.0673	0/1:30:10,20:10:360:20:720:-56.0979,0,-23.7134	1/1:31:0,31:0:0:31:1098:-99.1286,-9.33193,0	0/1:68:31,37:31:1112:37:1328:-99.3522,0,-79.9213	0/1:31:12,19:12:432:19:684:-52.5584,0,-29.8893	1/1:54:0,54:0:0:54:1917:-172.805,-16.2556,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:36:20,16:20:720:16:572:-40.9763,0,-54.2917	0/1:33:20,13:20:720:13:459:-31.7101,0,-55.1948	1/1:104:0,104:0:0:104:3708:-333.923,-31.3071,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0
chr05	2906765	.	A	G	24402.3	PASS	AB=0.517253;ABP=10.5782;AC=44;AF=0.236559;AN=186;AO=1523;CIGAR=1X;DP=6104;DPB=6104;DPRA=1.15845;EPP=3310.16;EPPR=9928.82;GTI=1;LEN=1;MEANALT=1.01923;MQM=59.9816;MQMR=59.9716;NS=93;NUMALT=1;ODDS=0.646594;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53001;QR=162756;RO=4579;RPL=0;RPP=3310.16;RPPR=9928.82;RPR=1523;RUN=1;SAF=0;SAP=3310.16;SAR=1523;SRF=0;SRP=9946.18;SRR=4579;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:10,10:10:360:10:345:-25.3602,0,-26.7237	0/0:109:109,0:109:3879:0:0:0,-32.8123,-349.306	0/1:131:67,62:67:2376:62:2164:-155.831,0,-174.905	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.217	0/1:39:20,19:20:720:19:658:-47.8011,0,-53.3886	0/1:47:27,20:27:968:20:697:-48.9023,0,-73.289	0/1:111:64,47:64:2284:47:1657:-116.001,0,-172.408	0/0:55:55,0:55:1938:0:0:0,-16.5566,-174.693	0/1:60:20,40:20:708:40:1401:-108.323,0,-45.9139	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.695	0/1:24:12,12:12:416:12:392:-28.3698,0,-30.5469	0/0:35:35,0:35:1235:0:0:0,-10.536,-111.453	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:33:33,0:33:1162:0:0:0,-9.93399,-104.885	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:186:88,98:88:3118:98:3423:-252.295,0,-224.77	0/1:101:41,60:41:1463:60:2114:-160.124,0,-101.561	0/1:139:39,100:39:1392:100:3492:-272.645,0,-83.7358	0/1:85:43,42:43:1540:42:1468:-106.824,0,-113.306	0/0:51:50,1:50:1784:1:32:0,-12.1532,-157.643	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/0:213:213,0:213:7586:0:0:0,-64.1194,-682.773	0/1:213:124,89:124:4390:89:3121:-216.997,0,-331.158	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.8665	0/1:192:93,99:93:3317:99:3458:-253.638,0,-240.95	0/1:75:42,33:42:1500:33:1159:-82.0386,0,-112.717	0/1:75:38,37:38:1343:37:1277:-92.6488,0,-98.5921	.:.:.:.:.:.:.:.	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6551	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:9:2,7:2:72:7:237:-18.9498,0,-4.12745	0/0:116:116,0:116:4104:0:0:0,-34.9195,-369.537	0/0:125:125,0:125:4434:0:0:0,-37.6287,-399.234	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:82:81,1:81:2871:1:36:0,-21.0862,-255.029	0/1:33:21,12:21:748:12:381:-24.6645,0,-57.7113	0/0:83:83,0:83:2951:0:0:0,-24.9855,-265.824	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:33:33,0:33:1159:0:0:0,-9.93399,-104.616	0/1:99:49,50:49:1734:50:1757:-128.609,0,-126.533	0/0:98:97,1:97:3429:1:36:0,-25.9027,-305.224	0/1:193:106,87:106:3721:87:3001:-212.221,0,-276.995	0/0:101:100,1:100:3568:1:36:0,-26.8058,-317.731	0/0:79:79,0:79:2804:0:0:0,-23.7814,-252.599	0/0:199:199,0:199:7087:0:0:0,-59.905,-637.891	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/1:29:14,15:14:456:15:509:-37.2944,0,-32.6225	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:76:36,40:36:1271:40:1390:-102.517,0,-91.8138	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:45:14,31:14:500:31:1077:-83.6897,0,-31.7898	0/1:51:22,29:22:780:29:1028:-77.4805,0,-55.1705	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:142:142,0:142:5059:0:0:0,-42.7463,-455.457	0/1:128:60,68:60:2141:68:2368:-174.841,0,-154.424	0/1:42:15,27:15:523:27:926:-71.0041,0,-34.7552	0/1:55:25,30:25:892:30:1036:-76.9895,0,-64.043	0/0:163:161,2:161:5746:2:72:0,-42.2312,-510.263	0/1:94:29,65:29:1024:65:2246:-174.103,0,-64.1758	0/1:7:3,4:3:108:4:132:-10.0993,0,-7.96796	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/1:48:27,21:27:964:21:752:-53.5568,0,-72.6274	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:88:87,1:87:3099:1:36:0,-22.8924,-275.54	0/0:36:36,0:36:1272:0:0:0,-10.8371,-114.783	0/0:105:105,0:105:3708:0:0:0,-31.6081,-333.924	0/0:118:118,0:118:4196:0:0:0,-35.5215,-377.822	0/1:75:38,37:38:1360:37:1307:-95.3535,0,-100.123	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/0:65:64,1:64:2287:1:27:0,-16.8672,-203.391	0/1:100:46,54:46:1620:54:1891:-140.362,0,-115.983	0/0:92:92,0:92:3281:0:0:0,-27.6948,-295.509	0/1:78:42,36:42:1512:36:1220:-86.6148,0,-112.894	0/1:41:24,17:24:844:17:595:-41.5345,0,-63.9367	0/0:40:40,0:40:1390:0:0:0,-12.0412,-125.395	0/1:76:31,45:31:1108:45:1575:-119.161,0,-77.1527	0/1:32:14,18:14:500:18:622:-46.6691,0,-35.7032	0/0:57:56,1:56:1992:1:32:0,-13.9594,-176.355	0/0:44:44,0:44:1554:0:0:0,-13.2453,-140.15	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:40:21,19:21:735:19:628:-44.79,0,-54.4302	0/1:31:16,15:16:572:15:510:-36.8902,0,-42.4815	0/0:69:69,0:69:2427:0:0:0,-20.7711,-218.674	0/0:45:45,0:45:1592:0:0:0,-13.5463,-143.57
chr05	2906789	.	T	C	115301	PASS	AB=0.474389;ABP=20.028;AC=142;AF=0.763441;AN=186;AO=4590;CIGAR=1X;DP=6169;DPB=6169;DPRA=0;EPP=4003.66;EPPR=1487.55;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.9786;MQMR=59.9695;NS=93;NUMALT=1;ODDS=0.493443;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163835;QR=56510;RO=1576;RPL=841;RPP=4003.66;RPPR=1487.55;RPR=3749;RUN=1;SAF=0;SAP=9970.07;SAR=4590;SRF=0;SRP=3425.25;SRR=1576;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	1/1:109:0,109:0:0:109:3888:-350.113,-32.8123,0	0/1:137:67,70:67:2377:70:2496:-183.651,0,-172.945	1/1:87:1,86:1:36:86:3051:-271.221,-22.5913,0	0/1:38:19,19:19:684:19:684:-50.4512,0,-50.4512	0/1:47:20,27:20:720:27:964:-72.9284,0,-50.9804	0/1:117:49,68:49:1760:68:2373:-178.604,0,-123.463	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0	0/1:60:40,20:40:1436:20:695:-44.8001,0,-111.476	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:38:0,38:0:0:38:1347:-121.529,-11.4391,0	1/1:41:0,41:0:0:41:1467:-132.325,-12.3422,0	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	1/1:28:0,28:0:0:28:1003:-90.5856,-8.42884,0	1/1:33:0,33:0:0:33:1139:-102.809,-9.93399,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:192:104,88:104:3736:88:3139:-224.938,0,-278.642	0/1:105:61,44:61:2188:44:1576:-110.523,0,-165.578	0/1:139:103,36:103:3688:36:1292:-74.7406,0,-290.276	0/1:85:42,43:42:1500:43:1532:-112.585,0,-109.707	1/1:50:1,49:1:36:49:1756:-154.725,-11.4532,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:211:0,211:0:0:211:7546:-679.179,-63.5173,0	0/1:217:93,124:93:3344:124:4430:-333.548,0,-235.852	1/1:15:0,15:0:0:15:524:-47.431,-4.51545,0	0/1:193:102,90:102:3668:90:3228:-232.584,0,-272.164	0/1:78:35,43:35:1256:43:1548:-116.133,0,-89.8649	0/1:81:41,40:41:1472:40:1428:-104.434,0,-108.393	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3188	1/1:111:0,111:0:0:111:3984:-358.749,-33.4143,0	1/1:126:0,126:0:0:126:4508:-405.886,-37.9298,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:81:1,80:1:36:80:2852:-253.318,-20.7852,0	0/1:33:12,21:12:432:21:733:-56.3557,0,-29.2872	1/1:87:0,87:0:0:87:3090:-278.328,-26.1896,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	0/1:102:51,51:51:1817:51:1793:-130.938,0,-133.104	1/1:98:1,97:1:36:97:3448:-306.935,-25.9027,0	0/1:202:96,106:96:3422:106:3793:-280.758,0,-247.383	1/1:102:1,101:1:36:101:3570:-317.908,-27.1068,0	1/1:79:0,78:0:0:78:2800:-251.88,-23.4803,0	1/1:195:0,195:0:0:195:6976:-627.902,-58.7009,0	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	1/1:112:0,112:0:0:112:4013:-361.358,-33.7154,0	0/1:32:16,16:16:561:16:568:-41.8189,0,-41.1803	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:77:38,39:38:1364:39:1400:-103.12,0,-99.8814	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	0/1:48:34,14:34:1224:14:504:-31.2487,0,-96.0176	0/1:51:30,21:30:1080:21:749:-52.3831,0,-82.1607	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:145:0,145:0:0:145:5193:-467.507,-43.6494,0	0/1:126:67,58:67:2408:58:2080:-149.482,0,-178.988	0/1:43:28,15:28:1004:15:532:-35.2688,0,-77.7316	0/1:53:29,24:29:1044:24:860:-61.7672,0,-78.3202	1/1:166:2,164:2:72:164:5860:-520.659,-43.1343,0	0/1:95:65,30:65:2336:30:1061:-67.2024,0,-181.901	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:49:0,49:0:0:49:1737:-156.613,-14.7505,0	0/1:49:22,27:22:792:27:968:-72.6869,0,-56.7251	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:86:0,86:0:0:86:3080:-277.428,-25.8886,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:108:0,108:0:0:108:3865:-348.044,-32.5112,0	1/1:118:0,118:0:0:118:4228:-380.7,-35.5215,0	0/1:77:38,39:38:1364:39:1400:-103.12,0,-99.8814	1/1:37:0,37:0:0:37:1313:-118.471,-11.1381,0	0/1:7:6,1:6:197:1:36:-1.49107,0,-15.9441	1/1:68:1,67:1:36:67:2404:-213.018,-16.8718,0	0/1:100:56,44:56:2012:44:1572:-111.669,0,-151.25	1/1:92:0,92:0:0:92:3259:-293.53,-27.6948,0	0/1:79:37,42:37:1328:42:1504:-111.873,0,-96.0409	0/1:41:18,23:18:648:23:824:-62.1411,0,-46.3097	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	0/1:76:45,31:45:1616:31:1097:-76.1597,0,-122.852	0/1:31:18,13:18:648:13:464:-32.7656,0,-49.32	1/1:57:0,57:0:0:57:2015:-181.62,-17.1587,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:38:19,19:19:684:19:674:-49.548,0,-50.4512	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	1/1:69:0,69:0:0:69:2461:-221.743,-20.7711,0	1/1:45:0,45:0:0:45:1611:-145.279,-13.5464,0
chr05	2915250	.	T	C	80751.9	PASS	AB=0.593851;ABP=144.852;AC=145;AF=0.771277;AN=188;AO=3760;CIGAR=1X;DP=4516;DPB=4516;DPRA=0;EPP=8167.75;EPPR=1642.47;GTI=4;LEN=1;MEANALT=1.01064;MQM=59.9965;MQMR=59.9854;NS=94;NUMALT=1;ODDS=0.715286;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134239;QR=26980;RO=755;RPL=3760;RPP=8167.75;RPPR=1642.47;RPR=0;RUN=1;SAF=0;SAP=8167.75;SAR=3760;SRF=0;SRP=1642.47;SRR=755;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:79:1,78:1:36:78:2777:-246.572,-20.1831,0	0/1:33:16,17:16:561:17:608:-45.118,0,-40.8831	1/1:91:0,91:0:0:91:3257:-293.349,-27.3937,0	0/1:16:3,13:3:108:13:449:-35.921,0,-5.25869	0/1:40:14,26:14:500:26:917:-70.8025,0,-33.295	0/1:67:26,41:26:913:41:1472:-112.607,0,-62.315	1/1:89:0,89:0:0:89:3166:-285.162,-26.7917,0	0/1:44:28,16:28:989:16:576:-38.9297,0,-76.0767	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0	0/1:44:22,22:22:792:22:792:-58.3604,0,-58.3604	1/1:52:0,52:0:0:52:1859:-167.588,-15.6536,0	1/1:55:0,55:0:0:55:1965:-177.124,-16.5567,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:37:0,37:0:0:37:1327:-119.732,-11.1381,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:48:28,20:28:985:20:720:-50.6793,0,-74.5121	0/1:97:41,56:41:1476:56:2012:-152.153,0,-103.936	0/1:20:9,11:9:320:11:371:-27.6924,0,-23.1218	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/1:38:11,27:11:392:27:957:-75.0047,0,-24.1809	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:144:0,144:0:0:144:5130:-461.841,-43.3483,0	0/1:71:26,45:26:917:45:1597:-122.645,0,-61.4715	1/1:18:0,18:0:0:18:618:-55.9382,-5.41854,0	0/1:98:36,62:36:1296:62:2224:-170.923,0,-87.443	0/1:94:41,53:41:1476:53:1880:-141.179,0,-104.839	0/1:76:14,62:14:504:62:2213:-176.555,0,-22.8198	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:175:0,175:0:0:175:6272:-564.573,-52.6803,0	1/1:97:0,97:0:0:97:3488:-314.13,-29.1999,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:69:1,68:1:36:68:2448:-216.976,-17.1728,0	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	0/1:34:11,23:11:392:23:820:-63.8875,0,-25.385	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:75:30,45:30:1080:45:1616:-123.153,0,-74.936	1/1:61:0,60:0:0:60:2115:-190.401,-18.0618,0	1/1:67:0,67:0:0:67:2362:-212.836,-20.169,0	1/1:85:0,85:0:0:85:3025:-272.48,-25.5876,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:31:0,31:0:0:31:1115:-100.662,-9.33193,0	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:49:20,29:20:701:29:1040:-79.1639,0,-48.6613	1/1:15:0,15:0:0:15:506:-45.8578,-4.51545,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1568	0/1:37:14,23:14:489:23:794:-60.6352,0,-33.2008	0/1:88:39,49:39:1400:49:1764:-132.553,0,-99.8085	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:123:0,123:0:0:123:4397:-395.902,-37.0267,0	0/1:90:22,68:22:792:68:2425:-191.412,0,-44.513	0/1:40:17,23:17:612:23:818:-61.9,0,-43.3722	0/1:27:4,23:4:140:23:820:-65.9947,0,-4.81677	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:49:27,22:27:964:22:775:-55.3199,0,-72.3264	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:73:34,39:34:1209:39:1404:-104.684,0,-87.1389	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:91:0,91:0:0:91:3242:-291.999,-27.3937,0	1/1:26:0,26:0:0:26:936:-84.5586,-7.82678,0	1/1:152:0,152:0:0:152:5430:-488.827,-45.7566,0	1/1:78:0,78:0:0:78:2774:-249.898,-23.4803,0	0/1:35:4,31:4:140:31:1116:-90.2156,0,-2.40853	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	0/1:51:16,35:16:576:35:1241:-96.64,0,-36.8225	1/1:94:0,94:0:0:94:3304:-297.577,-28.2968,0	0/1:91:37,54:37:1328:54:1944:-147.842,0,-92.4285	0/1:24:14,10:14:500:10:356:-25.1565,0,-38.1115	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:81:44,37:44:1584:37:1332:-95.799,0,-118.468	0/1:33:14,19:14:504:19:684:-51.9563,0,-35.7641	1/1:56:0,56:0:0:56:2001:-180.362,-16.8577,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:36:19,17:19:680:17:607:-44.1245,0,-50.6921	0/1:43:24,19:24:864:19:665:-47.2285,0,-65.1383	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:67:0,67:0:0:67:2385:-214.906,-20.169,0
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chr05	2950127	.	AT	TT	22223.3	PASS	AB=0.456419;ABP=51.842;AC=45;AF=0.241935;AN=186;AO=1374;CIGAR=1X1M;DP=6611;DPB=6611;DPRA=0.978276;EPP=2969.27;EPPR=11283.9;GTI=3;LEN=1;MEANALT=1.10204;MQM=59.9847;MQMR=59.999;NS=93;NUMALT=1;ODDS=3.60453;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49178;QR=184876;RO=5227;RPL=1372;RPP=2969.27;RPPR=11283.9;RPR=2;RUN=1;SAF=0;SAP=2986.61;SAR=1374;SRF=0;SRP=11353.3;SRR=5227;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:25,13:25:878:13:462:-30.4771,0,-67.8959	0/0:34:34,0:34:1185:0:0:0,-10.235,-106.952	0/1:161:97,64:97:3442:64:2296:-158.435,0,-261.526	0/0:202:202,0:202:7150:0:0:0,-60.8081,-643.562	0/1:49:26,23:26:915:23:824:-59.7328,0,-67.9142	0/1:24:13,11:13:442:11:396:-28.758,0,-32.8784	0/1:74:40,34:40:1379:34:1224:-88.1908,0,-102.125	0/0:86:86,0:86:3032:0:0:0,-25.8886,-273.11	0/1:73:31,42:31:1101:42:1508:-114.039,0,-77.4243	0/0:58:57,1:57:2035:1:21:0,-15.3598,-181.323	0/0:44:44,0:44:1555:0:0:0,-13.2453,-140.24	0/0:96:96,0:96:3442:0:0:0,-28.8989,-309.993	0/1:75:41,34:41:1451:34:1224:-87.8898,0,-108.308	0/0:44:44,0:44:1573:0:0:0,-13.2453,-141.86	0/0:77:77,0:77:2709:0:0:0,-23.1793,-244.05	0/0:50:50,0:50:1763:0:0:0,-15.0515,-158.95	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.32	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3994	0/0:36:36,0:36:1285:0:0:0,-10.8371,-115.952	0/1:128:81,47:81:2895:47:1669:-111.964,0,-222.253	0/1:85:59,26:59:2092:26:932:-58.6113,0,-162.961	0/1:102:30,71:30:1054:71:2533:-197.456,0,-64.405	0/1:61:34,27:34:1192:27:957:-68.081,0,-89.2196	0/0:17:16,1:16:576:1:36:0,-1.51923,-48.5767	0/0:101:98,1:98:3436:1:36:0,-26.5635,-305.855	0/0:219:219,0:219:7618:0:0:0,-65.9256,-685.665	0/1:184:107,77:107:3829:77:2745:-191.902,0,-289.416	0/0:32:32,0:32:1130:0:0:0,-9.63296,-102.006	0/1:147:87,60:87:3065:60:2152:-149.673,0,-231.826	0/1:69:30,38:30:1045:38:1368:-102.698,0,-73.6333	0/1:64:35,29:35:1236:29:1029:-73.6552,0,-92.2762	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1292	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:184:184,0:184:6521:0:0:0,-55.3895,-586.973	0/0:63:63,0:63:2221:0:0:0,-18.9649,-200.152	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	.:.:.:.:.:.:.:.	0/0:164:161,3:161:5662:3:108:0,-39.2937,-499.625	0/1:49:24,22:24:862:22:788:-57.0378,0,-63.6952	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.869	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:62:62,0:62:2191:0:0:0,-18.6639,-197.454	0/1:103:47,56:47:1679:56:1992:-148.547,0,-120.39	0/0:113:113,0:113:3962:0:0:0,-34.0164,-356.769	0/1:80:47,33:47:1661:33:1180:-82.4256,0,-125.694	0/0:85:85,0:85:3039:0:0:0,-25.5875,-273.739	0/0:71:71,0:71:2502:0:0:0,-21.3731,-225.432	0/0:15:15,0:15:538:0:0:0,-4.51545,-48.7558	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:94:94,0:94:3332:0:0:0,-28.2968,-300.098	0/1:44:31,13:31:1093:13:468:-29.2143,0,-85.4329	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:98:63,35:63:2207:35:1260:-84.2045,0,-169.39	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.715	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:13:1,12:1:36:12:428:-35.2605,-0.315115,0	0/1:43:23,20:23:816:20:720:-52.1845,0,-60.8171	0/1:84:46,38:46:1624:38:1360:-97.4141,0,-121.16	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:125:124,0:124:4388:0:0:0,-37.3277,-394.843	0/1:114:45,69:45:1588:69:2461:-187.425,0,-108.891	0/1:83:43,40:43:1485:40:1434:-104.372,0,-108.952	0/1:69:38,31:38:1329:31:1112:-79.6203,0,-99.135	0/0:107:107,0:107:3797:0:0:0,-32.2102,-341.927	0/1:70:29,41:29:1040:41:1461:-110.712,0,-72.8425	0/1:26:20,6:20:711:6:216:-11.9637,0,-56.4893	0/0:54:53,1:53:1893:1:36:0,-12.6573,-167.049	0/1:30:21,9:21:754:9:324:-20.475,0,-59.1559	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.425	0/0:126:126,0:126:4458:0:0:0,-37.9298,-401.39	0/0:61:61,0:61:2159:0:0:0,-18.3628,-194.575	0/0:76:76,0:76:2660:0:0:0,-22.8783,-239.643	0/0:116:116,0:116:4104:0:0:0,-34.9195,-369.545	0/1:112:68,44:68:2425:44:1576:-108.416,0,-184.79	0/0:68:68,0:68:2380:0:0:0,-20.47,-214.455	0/0:8:8,0:8:281:0:0:0,-2.40824,-25.6303	0/0:88:88,0:88:3084:0:0:0,-26.4906,-277.785	0/1:102:71,31:71:2535:31:1112:-69.6863,0,-197.696	0/0:133:133,0:133:4694:0:0:0,-40.037,-422.618	0/1:49:26,23:26:910:23:828:-60.0936,0,-67.463	0/1:97:37,60:37:1308:60:2156:-165.107,0,-88.8194	0/0:56:56,0:56:1979:0:0:0,-16.8577,-178.383	0/1:133:73,60:73:2613:60:2156:-154.265,0,-195.38	0/1:26:11,15:11:394:15:540:-41.1098,0,-27.9747	0/0:58:58,0:58:2022:0:0:0,-17.4597,-182.248	0/0:80:80,0:80:2867:0:0:0,-24.0824,-258.267	0/0:46:46,0:46:1645:0:0:0,-13.8474,-148.337	0/1:92:47,43:47:1675:43:1544:-111.801,0,-123.583	0/1:80:27,53:27:964:53:1894:-146.655,0,-62.9939	0/0:93:93,0:93:3276:0:0:0,-27.9958,-295.058	0/0:77:76,1:76:2712:1:36:0,-19.581,-240.724
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chr05	2986355	.	T	A	150027	PASS	AB=0.498755;ABP=3.05357;AC=144;AF=0.774194;AN=186;AO=5874;CIGAR=1X;DP=7498;DPB=7498;DPRA=27.1558;EPP=4778.04;EPPR=1292.42;GTI=1;LEN=1;MEANALT=1;MQM=51.8458;MQMR=59.9206;NS=93;NUMALT=1;ODDS=3.48685;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210482;QR=57715;RO=1624;RPL=4733;RPP=4772.73;RPPR=1292.42;RPR=1141;RUN=1;SAF=5873;SAP=12749.6;SAR=1;SRF=1624;SRP=3529.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:20,17:20:707:17:612:-43.9749,0,-52.8165	1/1:88:0,88:0:0:88:3122:-278.203,-26.4906,0	0/1:159:83,76:83:2968:76:2717:-195.332,0,-219.3	1/1:169:0,169:0:0:169:6060:-543.457,-50.8741,0	0/1:54:28,26:28:1000:26:936:-67.7173,0,-74.0598	0/1:20:7,13:7:252:13:468:-36.1564,0,-17.0084	0/1:45:22,23:22:784:23:828:-61.1891,0,-57.2488	1/1:92:1,91:1:36:91:3257:-287.511,-24.0965,0	0/1:66:25,41:25:883:41:1472:-110.724,0,-59.9195	1/1:139:0,139:0:0:139:4945:-444.037,-41.8432,0	1/1:52:0,52:0:0:52:1857:-166.75,-15.6536,0	1/1:68:0,68:0:0:68:2444:-218.051,-20.47,0	0/1:64:27,37:27:964:37:1327:-98.9346,0,-67.8109	1/1:38:0,38:0:0:38:1368:-123.018,-11.4391,0	1/1:66:0,66:0:0:66:2368:-212.547,-19.868,0	1/1:41:0,41:0:0:41:1472:-132.193,-12.3422,0	1/1:54:0,54:0:0:54:1944:-174.034,-16.2556,0	1/1:38:0,38:0:0:38:1368:-121.446,-11.4391,0	1/1:27:0,27:0:0:27:957:-85.8122,-8.12781,0	0/1:254:116,138:116:4144:138:4956:-368.172,0,-296.683	0/1:117:51,66:51:1820:66:2363:-176.791,0,-128.856	0/1:135:83,52:83:2963:52:1872:-127.994,0,-226.258	0/1:48:27,21:27:968:21:756:-53.8173,0,-72.9879	1/1:105:1,104:1:36:104:3740:-330.511,-28.0099,0	1/1:76:0,76:0:0:76:2732:-244.089,-22.8783,0	1/1:241:0,241:0:0:241:8637:-774.188,-72.5482,0	0/1:164:100,64:100:3523:64:2304:-157.178,0,-267.912	1/1:35:0,35:0:0:35:1260:-112.986,-10.5361,0	0/1:303:152,151:152:5398:151:5409:-394.517,0,-394.74	0/1:98:45,53:45:1611:53:1904:-140.771,0,-115.777	0/1:84:38,46:38:1348:46:1652:-122.149,0,-96.3337	0/1:6:4,2:4:140:2:72:-5.01335,0,-11.1384	1/1:15:0,15:0:0:15:540:-47.6155,-4.51545,0	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	1/1:4:0,4:0:0:4:144:-13.1507,-1.20412,0	1/1:6:0,6:0:0:6:212:-19.044,-1.80618,0	1/1:215:0,215:0:0:215:7723:-692.857,-64.7215,0	1/1:157:0,157:0:0:157:5617:-502.666,-47.2617,0	1/1:53:0,53:0:0:53:1904:-170.614,-15.9546,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	1/1:133:4,129:4:144:129:4621:-401.076,-26.7234,0	0/1:28:17,11:17:600:11:396:-27.4634,0,-45.9004	1/1:113:2,111:2:64:111:3969:-349.236,-27.9377,0	1/1:58:0,58:0:0:58:2061:-184.001,-17.4597,0	1/1:41:0,41:0:0:41:1470:-131.911,-12.3422,0	0/1:131:60,71:60:2136:71:2556:-190.55,0,-153.017	1/1:76:0,76:0:0:76:2725:-243.384,-22.8783,0	0/1:123:83,40:83:2944:40:1436:-90.8498,0,-228.166	1/1:122:0,122:0:0:122:4331:-388.798,-36.7257,0	1/1:96:0,96:0:0:96:3437:-307.908,-28.8989,0	1/1:216:0,216:0:0:216:7748:-696.28,-65.0225,0	1/1:7:0,7:0:0:7:252:-22.9963,-2.10721,0	1/1:141:0,141:0:0:141:5056:-450.834,-42.4452,0	0/1:20:8,12:8:284:12:432:-33.1678,0,-19.8828	1/1:4:0,4:0:0:4:144:-13.2414,-1.20412,0	0/1:68:39,29:39:1396:29:1036:-70.9925,0,-105.469	1/1:54:0,54:0:0:54:1940:-174.373,-16.2556,0	.:.:.:.:.:.:.:.	0/1:8:3,5:3:104:5:180:-14.1319,0,-7.29457	0/1:47:20,27:20:704:27:972:-73.3469,0,-49.5361	0/1:96:45,51:45:1576:51:1832:-135.714,0,-113.229	1/1:3:0,3:0:0:3:104:-9.50489,-0.90309,0	1/1:147:0,147:0:0:147:5287:-474.568,-44.2514,0	0/1:140:57,83:57:2040:83:2988:-226.07,0,-141.728	0/1:46:24,22:24:860:22:788:-57.202,0,-63.8745	0/1:54:33,21:33:1172:21:756:-51.8474,0,-89.5319	1/1:137:0,137:0:0:137:4907:-440.005,-41.2411,0	0/1:109:59,50:59:2095:50:1785:-127.734,0,-156.002	0/1:7:4,3:4:140:3:108:-7.94263,0,-10.8374	1/1:65:0,65:0:0:65:2336:-208.533,-19.567,0	0/1:49:21,28:21:744:28:1008:-75.5116,0,-52.4474	0/1:10:5,5:5:176:5:176:-13.1541,0,-13.1747	1/1:107:0,107:0:0:107:3851:-343.105,-32.2102,0	1/1:27:0,27:0:0:27:948:-84.8572,-8.12781,0	1/1:91:0,91:0:0:91:3242:-290.594,-27.3937,0	1/1:133:1,132:1:36:132:4727:-419.94,-36.4387,0	0/1:85:35,50:35:1256:50:1796:-134.658,0,-87.7577	1/1:53:0,53:0:0:53:1904:-170.162,-15.9546,0	0/1:6:3,3:3:108:3:108:-8.21437,0,-8.26899	1/1:55:2,53:2:72:53:1908:-164.405,-9.71993,0	0/1:138:78,60:78:2788:60:2146:-150.09,0,-209.619	1/1:226:0,226:0:0:226:8085:-723.354,-68.0328,0	0/1:66:24,42:24:860:42:1494:-114.08,0,-57.8539	0/1:43:17,26:17:603:26:932:-70.5978,0,-41.6552	1/1:74:0,74:0:0:74:2664:-238.217,-22.2762,0	0/1:122:53,69:53:1851:69:2475:-185.764,0,-130.136	0/1:40:25,15:25:859:15:540:-36.3377,0,-65.5795	1/1:66:0,66:0:0:66:2360:-209.705,-19.868,0	1/1:56:0,56:0:0:56:1992:-177.294,-16.8577,0	1/1:27:0,27:0:0:27:957:-86.231,-8.12781,0	0/1:67:37,30:37:1324:30:1076:-76.4904,0,-99.2931	0/1:55:32,23:32:1135:23:828:-58.1397,0,-85.9014	1/1:85:0,85:0:0:85:3029:-270.855,-25.5876,0	1/1:90:0,90:0:0:90:3228:-289.185,-27.0927,0
chr05	3032154	.	AGAG	AGAA	155272	PASS	AB=0.484932;ABP=11.5828;AC=142;AF=0.755319;AN=188;AO=7195;CIGAR=3M1X;DP=9473;DPB=9473;DPRA=0;EPP=14999.1;EPPR=4625.21;GTI=1;LEN=1;MEANALT=1.30851;MQM=59.9911;MQMR=59.9955;NS=94;NUMALT=1;ODDS=4.75573;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256365;QR=78395;RO=2247;RPL=7122;RPP=14999.1;RPPR=4625.21;RPR=73;RUN=1;SAF=0;SAP=15626.8;SAR=7195;SRF=0;SRP=4882.31;SRR=2247;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:24,19:24:824:19:646:-45.5118,0,-61.5295	1/1:174:0,173:0:0:173:6177:-555.668,-52.0782,0	0/1:86:36,50:36:1277:50:1784:-134.954,0,-89.3441	1/1:135:0,135:0:0:135:4801:-432.245,-40.6391,0	0/1:60:23,36:23:798:36:1284:-97.8887,0,-54.1602	0/1:70:43,27:43:1513:27:964:-66.0047,0,-115.39	0/1:104:39,65:39:1349:65:2336:-179.192,0,-90.3978	1/1:216:0,216:0:0:216:7716:-694.473,-65.0225,0	0/1:87:37,50:37:1287:50:1792:-135.373,0,-89.9391	1/1:83:0,82:0:0:82:2906:-261.416,-24.6845,0	1/1:56:0,56:0:0:56:1996:-179.914,-16.8577,0	1/1:74:1,73:1:36:73:2593:-230.02,-18.6779,0	0/1:73:40,33:40:1388:33:1169:-83.5401,0,-103.239	1/1:78:0,77:0:0:77:2751:-247.551,-23.1793,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0	1/1:57:0,56:0:0:56:1993:-179.283,-16.8577,0	1/1:49:0,49:0:0:49:1748:-157.604,-14.7505,0	1/1:50:0,47:0:0:47:1688:-151.888,-14.1484,0	0/1:237:122,115:122:4275:115:4109:-298.65,0,-313.59	0/1:152:71,81:71:2460:81:2908:-216.198,0,-175.897	0/1:111:77,34:77:2711:34:1219:-76.6023,0,-210.819	0/1:109:55,53:55:1908:53:1889:-137.523,0,-139.233	1/1:128:4,124:4:136:124:4380:-381.799,-25.9566,0	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	1/1:204:1,203:1:36:203:7253:-649.225,-57.8118,0	0/1:221:103,118:103:3560:118:4203:-311.923,0,-254.085	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	0/1:240:132,107:132:4654:107:3787:-268.723,0,-346.723	0/1:144:84,60:84:2932:60:2144:-149.879,0,-220.768	0/1:184:96,88:96:3383:88:3152:-228.516,0,-249.299	0/1:17:12,5:12:431:5:180:-11.4346,0,-34.0132	1/1:36:1,35:1:36:35:1252:-109.387,-7.23881,0	0/1:13:3,10:3:106:10:347:-27.6502,0,-5.97571	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:29:7,22:7:245:22:776:-61.4323,0,-13.6608	1/1:182:0,181:0:0:181:6449:-580.249,-54.4864,0	1/1:193:0,192:0:0:192:6829:-614.428,-57.7978,0	1/1:98:0,98:0:0:98:3504:-315.571,-29.5009,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:144:0,142:0:0:142:5046:-453.995,-42.7463,0	0/1:48:23,25:23:814:25:900:-66.8716,0,-59.1316	1/1:90:0,89:0:0:89:3120:-280.816,-26.7917,0	1/1:91:0,91:0:0:91:3234:-291.281,-27.3937,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:75:38,37:38:1289:37:1332:-97.6051,0,-93.7273	1/1:106:0,106:0:0:106:3747:-337.431,-31.9092,0	0/1:164:78,85:78:2681:85:3044:-224.762,0,-192.108	1/1:106:0,106:0:0:106:3774:-339.859,-31.9092,0	1/1:216:0,215:0:0:215:7692:-692.005,-64.7215,0	1/1:166:0,165:0:0:165:5872:-528.352,-49.67,0	0/1:28:10,18:10:350:18:648:-50.223,0,-23.4078	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	0/1:61:39,22:39:1383:22:783:-52.4301,0,-106.406	0/1:8:1,7:1:30:7:248:-20.256,0,-0.591326	0/1:151:69,82:69:2350:82:2929:-218.388,0,-166.302	1/1:62:0,62:0:0:62:2195:-197.813,-18.6639,0	0/1:21:16,5:16:557:5:174:-9.67997,0,-44.1351	0/1:6:3,3:3:105:3:108:-8.26899,0,-7.98979	0/1:140:84,56:84:2925:56:2001:-138.218,0,-221.341	0/1:116:57,59:57:2029:59:2103:-154.619,0,-147.962	0/1:8:5,3:5:169:3:108:-7.66693,0,-13.1333	1/1:168:0,168:0:0:168:5986:-538.833,-50.573,0	0/1:217:105,112:105:3702:112:3951:-290.458,0,-268.062	0/1:85:42,42:42:1451:42:1500:-109.648,0,-105.235	0/1:150:68,82:68:2379:82:2927:-218.487,0,-169.214	1/1:158:6,152:6:203:152:5433:-470.498,-28.9614,0	0/1:158:106,51:106:3668:51:1820:-116.46,0,-282.706	0/1:43:25,18:25:872:18:631:-44.1714,0,-65.8516	1/1:90:0,89:0:0:89:3174:-285.524,-26.7917,0	0/1:76:37,39:37:1306:39:1386:-102.16,0,-94.9629	0/1:18:7,11:7:247:11:384:-29.4746,0,-17.1547	1/1:109:0,108:0:0:108:3811:-342.939,-32.5112,0	1/1:62:0,62:0:0:62:2199:-198.175,-18.6639,0	1/1:168:0,166:0:0:166:5927:-533.215,-49.971,0	1/1:237:0,237:0:0:237:8493:-764.367,-71.3441,0	0/1:127:60,66:60:2050:66:2353:-173.847,0,-146.586	1/1:112:0,111:0:0:111:3980:-358.139,-33.4143,0	0/1:26:16,10:16:567:10:356:-24.5545,0,-43.5347	1/1:127:0,127:0:0:127:4516:-406.609,-38.2308,0	0/1:128:74,54:74:2583:54:1927:-135.174,0,-194.186	1/1:201:0,201:0:0:201:7162:-644.64,-60.507,0	0/1:93:45,48:45:1562:48:1709:-126.098,0,-112.872	0/1:67:31,36:31:1084:36:1292:-96.4148,0,-77.6982	1/1:78:0,78:0:0:78:2757:-248.372,-23.4803,0	0/1:147:59,88:59:2067:88:3116:-236.415,0,-142.048	0/1:39:19,19:19:673:19:675:-49.3826,0,-49.2027	1/1:82:0,82:0:0:82:2898:-261.056,-24.6845,0	1/1:80:0,78:0:0:78:2746:-247.15,-23.4803,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:94:50,43:50:1724:43:1525:-109.186,0,-127.086	0/1:73:59,14:59:2086:14:500:-23.361,0,-166.029	1/1:130:2,127:2:72:127:4534:-401.391,-32.356,0	1/1:86:2,84:2:72:84:3008:-264.115,-19.0519,0
chr05	3043836	.	G	A	150561	PASS	AB=0.472735;ABP=33.7971;AC=139;AF=0.739362;AN=188;AO=7389;CIGAR=1X;DP=9922;DPB=9922;DPRA=35.9275;EPP=16048;EPPR=5499.01;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9805;MQMR=59.9913;NS=94;NUMALT=1;ODDS=4.79533;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258370;QR=88729;RO=2531;RPL=0;RPP=16048;RPPR=5499.01;RPR=7389;RUN=1;SAF=0;SAP=16048;SAR=7389;SRF=0;SRP=5499.01;SRR=2531;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:21,7:21:743:7:252:-14.6001,0,-58.7645	1/1:160:0,160:0:0:160:5625:-506.378,-48.1648,0	0/1:112:61,50:61:2129:50:1772:-126.135,0,-158.249	1/1:218:0,218:0:0:218:7634:-687.11,-65.6245,0	0/1:75:31,44:31:1074:44:1556:-117.754,0,-74.3892	0/1:82:34,48:34:1194:48:1666:-125.501,0,-83.0793	0/1:130:69,61:69:2420:61:2121:-152.021,0,-178.922	1/1:173:1,172:1:36:172:6043:-540.379,-48.4799,0	0/1:91:56,35:56:1982:35:1223:-82.9791,0,-151.249	1/1:114:1,113:1:36:113:3978:-354.611,-30.7191,0	1/1:68:0,68:0:0:68:2353:-212.031,-20.47,0	1/1:84:0,84:0:0:84:2866:-258.174,-25.2865,0	0/1:68:30,38:30:1050:38:1323:-98.8972,0,-74.3387	1/1:147:0,147:0:0:147:5069:-456.369,-44.2514,0	1/1:64:0,64:0:0:64:2242:-202.041,-19.2659,0	1/1:69:0,69:0:0:69:2377:-214.186,-20.7711,0	1/1:109:0,109:0:0:109:3770:-339.508,-32.8123,0	1/1:69:0,69:0:0:69:2431:-219.046,-20.7711,0	1/1:49:0,49:0:0:49:1704:-153.643,-14.7505,0	0/1:188:117,71:117:4086:71:2501:-168.746,0,-311.331	0/1:123:74,49:74:2590:49:1726:-118.594,0,-196.321	0/1:400:258,142:258:9086:142:5017:-331.268,0,-697.314	0/1:46:23,23:23:819:23:802:-58.65,0,-60.1842	0/1:81:9,72:9:315:72:2521:-202.759,0,-4.3038	1/1:59:0,59:0:0:59:2096:-188.909,-17.7608,0	1/1:286:3,283:3:108:283:9953:-885.645,-76.0194,0	0/1:159:82,77:82:2844:77:2688:-194.026,0,-208.333	1/1:36:0,36:0:0:36:1261:-113.79,-10.8371,0	0/1:222:106,116:106:3719:116:4025:-295.611,0,-268.084	0/1:246:121,125:121:4294:125:4318:-314.75,0,-312.586	0/1:154:75,79:75:2625:79:2759:-202.193,0,-190.135	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:5:0,5:0:0:5:168:-15.4504,-1.50515,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:185:0,185:0:0:185:6486:-583.835,-55.6906,0	1/1:228:0,228:0:0:228:8021:-721.922,-68.6348,0	1/1:89:0,89:0:0:89:3123:-281.297,-26.7917,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:121:5,116:5:176:116:4042:-347.785,-20.2396,0	0/1:36:17,19:17:574:19:663:-49.1564,0,-41.1414	1/1:161:0,161:0:0:161:5625:-506.38,-48.4658,0	1/1:55:0,55:0:0:55:1928:-173.797,-16.5567,0	1/1:59:0,59:0:0:59:2038:-183.692,-17.7608,0	0/1:88:46,42:46:1593:42:1479:-106.912,0,-117.164	1/1:113:0,113:0:0:113:3981:-358.482,-34.0164,0	0/1:157:85,72:85:2989:72:2508:-178.709,0,-221.982	1/1:107:0,107:0:0:107:3737:-336.496,-32.2102,0	1/1:139:0,139:0:0:139:4877:-439.088,-41.8432,0	1/1:169:0,169:0:0:169:5960:-536.512,-50.8741,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:152:0,152:0:0:152:5325:-479.392,-45.7566,0	0/1:81:45,36:45:1573:36:1265:-89.7666,0,-117.472	0/1:10:3,7:3:108:7:244:-19.2891,0,-7.06487	0/1:133:77,56:77:2689:56:1987:-139.067,0,-202.217	1/1:15:0,15:0:0:15:519:-47.0367,-4.51545,0	0/1:11:8,3:8:275:3:104:-6.39148,0,-21.7721	0/1:21:11,10:11:383:10:319:-22.6962,0,-28.4816	0/1:134:84,50:84:2952:50:1766:-118.884,0,-225.574	0/1:271:122,149:122:4232:149:5192:-385.836,0,-299.487	0/1:9:3,6:3:104:6:205:-16.0751,0,-6.99354	1/1:240:0,240:0:0:240:8440:-759.616,-72.2472,0	0/1:194:79,115:79:2743:115:4035:-304.943,0,-188.709	0/1:94:44,50:44:1572:50:1774:-131.645,0,-113.475	0/1:102:51,50:51:1820:50:1736:-125.756,0,-133.317	1/1:134:1,133:1:36:133:4676:-417.405,-36.7397,0	0/1:155:116,39:116:4099:39:1312:-71.7097,0,-322.435	0/1:34:8,26:8:284:26:911:-72.0699,0,-15.6683	1/1:88:0,88:0:0:88:3072:-276.709,-26.4906,0	0/1:97:56,41:56:1940:41:1389:-96.0982,0,-145.674	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	1/1:113:0,113:0:0:113:3919:-352.907,-34.0164,0	1/1:47:0,47:0:0:47:1664:-150.046,-14.1484,0	1/1:214:0,214:0:0:214:7469:-672.269,-64.4204,0	1/1:115:0,115:0:0:115:4090:-368.288,-34.6185,0	0/1:160:92,68:92:3232:68:2358:-164.301,0,-242.936	1/1:102:0,102:0:0:102:3576:-322.05,-30.7051,0	0/1:12:7,5:7:252:5:156:-10.7346,0,-19.4166	1/1:93:0,93:0:0:93:3255:-293.171,-27.9958,0	0/1:121:56,65:56:1956:65:2307:-171.466,0,-139.886	1/1:213:0,213:0:0:213:7493:-674.424,-64.1194,0	0/1:113:55,58:55:1919:58:2007:-146.885,0,-138.968	0/1:71:42,29:42:1469:29:987:-67.7619,0,-111.129	1/1:75:0,75:0:0:75:2590:-233.35,-22.5773,0	0/1:147:64,83:64:2244:83:2866:-213.925,0,-157.971	0/1:62:34,28:34:1190:28:950:-67.1411,0,-88.7397	1/1:78:0,78:0:0:78:2703:-243.516,-23.4803,0	1/1:79:0,79:0:0:79:2765:-249.091,-23.7814,0	1/1:66:0,66:0:0:66:2297:-206.989,-19.868,0	0/1:139:68,71:68:2364:71:2494:-182.87,0,-171.175	0/1:75:51,24:51:1767:24:810:-50.6328,0,-136.732	1/1:87:0,87:0:0:87:3051:-274.821,-26.1896,0	1/1:88:2,86:2:72:86:2995:-262.947,-19.6539,0
chr05	3045235	.	AAAC	AAAT,TAAT	373427	PASS	AB=0.493328,0.504154;ABP=6.08163,4.201;AC=142,44;AF=0.763441,0.236559;AN=186;AO=13089,4046;CIGAR=3M1X,1X2M1X;DP=17180;DPB=17180;DPRA=0,1.12128;EPP=27992.8,8650.36;EPPR=24.725;GTI=0;LEN=1,4;MEANALT=1.93548,2.34545;MQM=59.9785,59.917;MQMR=60;NS=93;NUMALT=2;ODDS=5.10683;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=469305,142026;QR=344;RO=10;RPL=50,16;RPP=27992.8,8650.36;RPPR=24.725;RPR=13039,4030;RUN=1,1;SAF=13089,4046;SAP=28425.4,8788.79;SAR=0,0;SRF=10;SRP=24.725;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:104:0,61,42:0:0:61,42:2181,1469:-297.405,-119.566,-101.203,-177.901,0,-165.258	1/1:395:0,395,0:0:0:395,0:14189,0:-1276.76,-118.907,0,-1276.76,-118.907,-1276.76	1/2:179:0,103,76:0:0:103,76:3704,2671:-519.957,-217.757,-186.751,-302.554,0,-279.676	1/1:329:0,328,0:0:0:328,0:11729,0:-1055.16,-98.7378,0,-1055.16,-98.7378,-1055.16	1/2:115:0,46,69:0:0:46,69:1656,2458:-335.826,-200.703,-186.856,-135.481,0,-114.71	1/2:190:0,92,98:0:0:92,98:3296,3453:-550.288,-281.479,-253.784,-269.164,0,-239.663	1/2:257:0,123,134:0:0:123,134:4396,4714:-742.517,-384.087,-347.06,-358.785,0,-318.447	1/1:301:0,300,1:0:0:300,1:10745,36:-966.593,-90.309,0,-963.655,-87.0118,-963.354	1/2:310:0,157,153:0:0:157,153:5634,5346:-894.769,-435.219,-387.957,-459.904,0,-413.846	1/1:180:0,180,0:0:0:180,0:6452,0:-580.064,-54.1854,0,-580.064,-54.1854,-580.064	1/1:97:0,96,0:0:0:96,0:3444,0:-309.813,-28.8989,0,-309.813,-28.8989,-309.813	1/1:133:0,132,0:0:0:132,0:4731,0:-425.7,-39.736,0,-425.7,-39.736,-425.7	1/2:123:0,64,59:0:0:64,59:2266,2070:-353.387,-168.805,-149.539,-184.934,0,-167.174	1/1:175:0,175,0:0:0:175,0:6284,0:-565.651,-52.6803,0,-565.651,-52.6803,-565.651	1/1:135:0,135,0:0:0:135,0:4852,0:-436.832,-40.6391,0,-436.832,-40.6391,-436.832	1/1:99:0,98,0:0:0:98,0:3520,0:-316.758,-29.5009,0,-316.758,-29.5009,-316.758	1/1:183:0,183,0:0:0:183,0:6559,0:-590.316,-55.0885,0,-590.316,-55.0885,-590.316	1/1:107:0,107,0:0:0:107,0:3844,0:-346.155,-32.2102,0,-346.155,-32.2102,-346.155	1/1:69:0,69,0:0:0:69,0:2484,0:-223.813,-20.7711,0,-223.813,-20.7711,-223.813	1/2:321:0,160,161:0:0:160,161:5707,5634:-923.955,-458.725,-410.56,-465.583,0,-417.118	1/2:619:0,311,307:0:0:311,307:11172,10750:-1786.03,-874.645,-781.024,-911.382,0,-818.965	1/2:87:0,29,58:0:0:29,58:1025,2069:-252.497,-169.021,-160.291,-83.8308,0,-66.3711	1/2:580:0,316,262:0:0:316,262:11321,9133:-1666.06,-742.767,-647.642,-923.311,0,-844.441	1/1:263:1,241,20:1:36:241,20:8647,704:-774.625,-69.6105,0,-717.615,-15.2434,-714.531	1/1:65:0,65,0:0:0:65,0:2328,0:-209.775,-19.567,0,-209.775,-19.567,-209.775	1/1:442:0,442,0:0:0:442,0:15835,0:-1424.78,-133.055,0,-1424.78,-133.055,-1424.78	1/2:366:0,173,193:0:0:173,193:6199,6809:-1060.36,-554.792,-502.714,-505.927,0,-447.829	1/1:76:0,76,0:0:0:76,0:2732,0:-246.122,-22.8783,0,-246.122,-22.8783,-246.122	1/2:419:3,206,210:3:96:206,210:7389,7387:-1195.12,-593.347,-539.069,-594.981,0,-539.499	1/2:254:0,142,111:0:0:142,111:5096,3880:-731.352,-315.669,-272.923,-415.735,0,-382.321	1/2:507:0,240,265:0:0:240,265:8612,9317:-1460.84,-758.372,-686.125,-702.465,0,-622.692	1/2:14:0,9,5:0:0:9,5:324,178:-41.3028,-14.8635,-12.1542,-26.7966,0,-25.2914	1/1:10:0,9,0:0:0:9,0:324,0:-29.146,-2.70927,0,-29.146,-2.70927,-29.146	1/2:6:0,3,3:0:0:3,3:99,95:-15.9709,-7.96059,-7.0575,-8.33349,0,-7.4304	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:4:0,2,2:0:0:2,2:72,66:-11.5555,-5.66565,-5.06359,-6.23466,0,-5.6326	1/1:418:0,418,0:0:0:418,0:14989,0:-1348.73,-125.831,0,-1348.73,-125.831,-1348.73	1/1:192:0,191,0:0:0:191,0:6824,0:-613.873,-57.4967,0,-613.873,-57.4967,-613.873	1/1:88:0,87,0:0:0:87,0:3132,0:-281.745,-26.1896,0,-281.745,-26.1896,-281.745	.:.:.:.:.:.:.:.	1/1:364:0,359,5:0:0:359,5:12861,179:-1156.92,-108.07,0,-1142.32,-93.1145,-1140.81	1/2:61:0,33,28:0:0:33,28:1173,982:-175.852,-80.2633,-70.3293,-95.9416,0,-87.5127	1/1:242:0,240,1:0:0:240,1:8575,36:-771.317,-72.2472,0,-768.379,-69.3098,-768.078	1/1:228:1,227,0:1:32:227,0:8158,0:-731.03,-65.4355,0,-731.331,-68.3338,-733.909	1/1:111:0,111,0:0:0:111,0:3977,0:-358.118,-33.4143,0,-358.118,-33.4143,-358.118	1/2:205:0,89,116:0:0:89,116:3196,4052:-590.669,-329.952,-303.161,-261.071,0,-226.151	1/1:233:0,232,1:0:0:232,1:8291,36:-745.828,-69.839,0,-742.891,-66.5417,-742.59	1/2:194:0,93,101:0:0:93,101:3340,3538:-560.695,-288.229,-260.233,-272.821,0,-242.417	1/1:172:0,172,0:0:0:172,0:6176,0:-555.85,-51.7772,0,-555.85,-51.7772,-555.85	1/1:204:0,202,0:0:0:202,0:7235,0:-650.873,-60.8081,0,-650.873,-60.8081,-650.873	1/1:244:0,242,2:0:0:242,2:8683,70:-781.11,-72.8493,0,-775.414,-66.8039,-774.812	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:195:0,194,1:0:0:194,1:6969,36:-626.91,-58.3998,0,-623.972,-55.1026,-623.671	1/2:60:0,28,30:0:0:28,30:1008,1055:-168.121,-85.8699,-77.441,-82.2477,0,-73.2168	1/2:30:0,17,13:0:0:17,13:612,440:-85.9564,-36.0081,-30.8906,-50.2959,0,-46.3825	1/2:193:0,97,96:0:0:97,96:3480,3414:-562.431,-278.577,-249.377,-284.211,0,-255.312	1/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chr05	3180055	.	C	T	31058.5	PASS	AB=0.453585;ABP=86.2618;AC=36;AF=0.191489;AN=188;AO=2136;CIGAR=1X;DP=19455;DPB=19455;DPRA=2.41462;EPP=4641.28;EPPR=37589;GTI=3;LEN=1;MEANALT=1.15254;MQM=59.9551;MQMR=59.9634;NS=94;NUMALT=1;ODDS=5.40464;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76430;QR=618885;RO=17309;RPL=2136;RPP=4641.28;RPPR=37589;RPR=0;RUN=1;SAF=0;SAP=4641.28;SAR=2136;SRF=0;SRP=37589;SRR=17309;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:17,15:17:597:15:540:-39.3036,0,-44.4232	0/0:174:174,0:174:6190:0:0:0,-52.3792,-557.194	0/1:141:61,80:61:2176:80:2838:-213.211,0,-153.661	0/0:259:258,1:258:9213:1:36:0,-74.3685,-825.544	0/1:87:40,47:40:1421:47:1684:-125.657,0,-101.996	0/1:67:28,39:28:989:39:1400:-106.13,0,-69.153	0/1:146:58,88:58:2050:88:3148:-239.595,0,-140.818	0/0:142:141,1:141:5041:1:36:0,-39.148,-449.11	0/1:71:42,29:42:1512:29:1025:-71.1876,0,-115.001	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/0:339:338,1:338:12105:1:21:0,-99.9492,-1087.2	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:52:21,31:21:752:31:1108:-84.3774,0,-52.3527	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:196:196,0:196:7040:0:0:0,-59.0019,-633.658	0/1:221:104,116:104:3728:116:4156:-307.634,0,-269.134	0/1:168:86,81:86:3073:81:2912:-211.611,0,-226.165	0/1:120:35,85:35:1252:85:3048:-238.426,0,-76.8615	0/1:66:27,39:27:972:39:1404:-106.783,0,-67.9299	0/0:97:93,4:93:3325:4:144:0,-15.8863,-286.153	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:331:328,2:328:11658:2:72:0,-92.863,-1042.2	0/1:192:98,94:98:3505:94:3376:-246.257,0,-257.815	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:240:130,110:130:4631:110:3921:-280.835,0,-344.702	0/1:203:111,92:111:3973:92:3300:-236.096,0,-296.65	0/1:149:90,59:90:3225:59:2109:-145.224,0,-245.616	0/0:353:347,6:347:12438:6:216:0,-86.4731,-1099.27	0/0:1107:1106,1:1106:39548:1:21:0,-331.14,-3555.91	0/0:575:570,5:570:20342:5:180:0,-156.54,-1813.7	0/0:2202:2198,2:2198:78543:2:72:0,-655.789,-7056.37	0/0:626:608,18:608:21728:18:644:0,-130.154,-1896.66	0/0:144:144,0:144:5168:0:0:0,-43.3483,-465.259	0/0:207:206,1:206:7351:1:36:0,-58.7149,-658.038	0/0:394:394,0:394:14080:0:0:0,-118.606,-1266.95	0/0:702:701,1:701:25038:1:36:0,-207.725,-2249.07	0/0:178:177,1:177:6360:1:36:0,-49.9851,-568.889	0/1:90:71,19:71:2556:19:684:-34.7976,0,-203.197	0/0:147:147,0:147:5265:0:0:0,-44.2514,-473.983	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.392	0/1:66:33,33:33:1180:33:1172:-85.9186,0,-86.6401	0/0:196:196,0:196:6994:0:0:0,-59.0019,-629.523	0/1:210:96,114:96:3418:114:4057:-302.101,0,-244.615	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.675	0/0:157:157,0:157:5617:0:0:0,-47.2617,-505.65	0/0:189:188,1:188:6642:1:36:0,-53.2964,-594.259	0/0:618:606,11:606:21666:11:396:0,-150.113,-1912.77	0/0:168:168,0:168:6005:0:0:0,-50.573,-540.554	0/1:79:49,30:49:1760:30:1076:-73.3715,0,-134.903	0/0:292:274,18:274:9797:18:629:0,-30.967,-824.357	0/1:142:82,60:82:2929:60:2156:-151.528,0,-221.097	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:529:524,5:524:18774:5:180:0,-142.693,-1672.67	0/0:594:576,17:576:20619:17:612:0,-123.459,-1799.78	0/1:109:61,48:61:2196:48:1709:-121.282,0,-165.093	0/1:75:30,45:30:1080:45:1605:-122.161,0,-74.936	0/0:371:369,2:369:13202:2:72:0,-104.845,-1181.14	0/0:109:109,0:109:3920:0:0:0,-32.8123,-352.991	0/1:237:125,112:125:4473:112:4028:-291.362,0,-331.394	0/1:63:30,33:30:1061:33:1188:-88.2637,0,-76.5642	0/1:94:55,39:55:1927:39:1392:-97.282,0,-145.404	0/0:158:156,2:156:5592:2:72:0,-40.7346,-496.574	0/1:114:49,65:49:1752:65:2336:-176.182,0,-123.647	0/1:143:127,16:127:4552:16:576:-9.1277,0,-366.798	0/0:124:124,0:124:4418:0:0:0,-37.3277,-397.79	0/1:55:27,28:27:968:28:1004:-74.1192,0,-70.8807	0/0:600:587,13:587:20981:13:464:0,-138.52,-1845.66	0/0:157:157,0:157:5625:0:0:0,-47.2617,-506.133	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:163:163,0:163:5836:0:0:0,-49.0679,-525.352	0/0:173:173,0:173:6200:0:0:0,-52.0782,-558.096	0/1:125:55,70:55:1980:70:2512:-188.703,0,-140.846	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:417:413,4:413:14744:4:144:0,-112.216,-1313.32	0/0:115:115,0:115:4113:0:0:0,-34.6184,-370.353	0/1:114:58,56:58:2065:56:2008:-146.406,0,-151.802	0/0:287:287,0:287:10254:0:0:0,-86.3956,-922.786	0/1:107:37,70:37:1332:70:2490:-192.14,0,-87.9722	0/1:31:16,15:16:564:15:521:-37.8844,0,-41.7584	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/1:102:48,52:48:1728:52:1872:-138.296,0,-125.342	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:283:282,1:282:10112:1:36:0,-81.5932,-906.412	0/1:449:395,53:395:14168:53:1908:-36.7763,0,-1139.65	0/1:56:16,40:16:576:40:1436:-112.68,0,-35.3173	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:61:61,0:61:2161:0:0:0,-18.3628,-194.756
chr05	3220580	.	A	C	29649	PASS	AB=0.474256;ABP=25.2593;AC=42;AF=0.223404;AN=188;AO=1852;CIGAR=1X;DP=8434;DPB=8434;DPRA=1.23197;EPP=4024.58;EPPR=14269.6;GTI=1;LEN=1;MEANALT=1.04082;MQM=59.9611;MQMR=59.9868;NS=94;NUMALT=1;ODDS=2.31286;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65515;QR=234402;RO=6574;RPL=1852;RPP=4024.58;RPPR=14269.6;RPR=0;RUN=1;SAF=1852;SAP=4024.58;SAR=0;SRF=6572;SRP=14260.9;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:44,27:44:1576:27:963:-65.6105,0,-120.75	0/0:109:109,0:109:3870:0:0:0,-32.8123,-348.497	0/1:151:76,75:76:2693:75:2660:-194.189,0,-197.159	0/0:128:126,2:126:4488:2:72:0,-31.6951,-397.252	0/1:93:38,55:38:1364:55:1941:-146.968,0,-95.0649	0/1:52:33,19:33:1163:19:671:-45.0622,0,-89.3226	0/1:186:89,97:89:3156:97:3450:-254.721,0,-228.276	0/0:128:126,2:126:4477:2:63:0,-32.5487,-397.118	0/1:148:81,67:81:2896:67:2340:-166.306,0,-216.324	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.026	0/0:49:49,0:49:1728:0:0:0,-14.7505,-155.805	0/0:85:85,0:85:3023:0:0:0,-25.5875,-272.301	0/1:60:36,24:36:1284:24:844:-58.2171,0,-97.8016	0/0:57:56,0:56:2004:0:0:0,-16.8577,-180.359	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:66:66,0:66:2346:0:0:0,-19.868,-211.398	0/0:78:78,0:78:2761:0:0:0,-23.4803,-248.732	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:167:81,86:81:2900:86:3037:-223.286,0,-210.964	0/1:130:68,62:68:2423:62:2194:-158.591,0,-179.192	0/1:95:51,44:51:1819:44:1544:-110.614,0,-135.393	0/1:85:51,34:51:1819:34:1216:-84.159,0,-138.403	0/0:133:125,8:125:4434:8:284:0,-14.1336,-373.329	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/0:300:297,3:297:10601:3:108:0,-80.2338,-943.929	0/1:223:119,103:119:4240:103:3650:-261.516,0,-314.59	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/1:180:90,90:90:3201:90:3202:-234.218,0,-234.127	0/1:87:41,46:41:1460:46:1637:-121.427,0,-105.506	0/1:136:90,46:90:3232:46:1643:-107.218,0,-250.161	0/1:14:12,2:12:432:2:68:-2.24329,0,-35.0068	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:262:261,0:261:9332:0:0:0,-78.5688,-839.486	0/0:102:102,0:102:3628:0:0:0,-30.7051,-326.727	0/0:78:78,0:78:2780:0:0:0,-23.4803,-250.442	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:81:80,1:80:2837:1:32:0,-21.1841,-252.369	0/1:34:19,15:19:676:15:523:-37.1634,0,-50.933	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.821	0/0:90:90,0:90:3193:0:0:0,-27.0927,-287.594	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:151:80,71:80:2834:71:2509:-180.605,0,-209.844	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:146:101,45:101:3590:45:1601:-100.428,0,-279.355	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.123	0/0:98:98,0:98:3493:0:0:0,-29.5009,-314.58	0/0:141:140,0:140:5001:0:0:0,-42.1442,-449.877	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:122:122,0:122:4368:0:0:0,-36.7257,-393.294	0/1:34:24,10:24:864:10:347:-21.3286,0,-67.8475	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9703	0/1:127:73,54:73:2608:54:1898:-132.863,0,-196.738	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	0/1:16:11,5:11:392:5:180:-11.7356,0,-30.8036	0/1:62:30,32:30:1080:32:1135:-83.7942,0,-78.8494	0/1:109:45,64:45:1612:64:2258:-170.67,0,-112.558	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:157:157,0:157:5610:0:0:0,-47.2617,-505.019	0/1:239:112,127:112:4000:127:4549:-337.628,0,-288.244	0/1:59:28,31:28:1004:31:1112:-82.6306,0,-72.9151	0/1:73:34,39:34:1220:39:1396:-103.964,0,-88.1316	0/0:143:143,0:143:5092:0:0:0,-43.0473,-458.422	0/1:103:34,69:34:1220:69:2413:-186.417,0,-79.1007	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	0/0:71:71,0:71:2517:0:0:0,-21.3731,-226.781	0/1:87:47,40:47:1668:40:1412:-101.188,0,-124.112	0/1:24:14,10:14:489:10:347:-24.3389,0,-37.1142	0/0:97:96,0:96:3397:0:0:0,-28.8989,-305.587	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/0:135:135,0:135:4779:0:0:0,-40.639,-430.267	0/1:88:55,33:55:1945:33:1154:-77.6716,0,-148.834	0/0:100:98,2:98:3495:2:72:0,-23.2663,-307.925	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.479	0/1:80:39,41:39:1371:41:1441:-105.71,0,-99.6054	0/0:97:93,1:93:3312:1:36:0,-25.055,-294.71	0/1:103:58,45:58:2080:45:1594:-112.743,0,-156.464	0/1:59:30,29:30:1080:29:1017:-74.0795,0,-79.7525	0/0:65:65,0:65:2300:0:0:0,-19.5669,-207.26	0/1:148:76,72:76:2708:72:2527:-183.127,0,-199.412	0/1:47:21,26:21:752:26:915:-68.5172,0,-53.8578	0/0:68:68,0:68:2422:0:0:0,-20.47,-218.235	0/0:68:68,0:68:2403:0:0:0,-20.47,-216.527	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.713	0/1:72:42,30:42:1504:30:1056:-73.6748,0,-113.98	0/1:70:28,42:28:1004:42:1472:-111.7,0,-69.6038	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.186	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.319
chr05	3220842	.	AAGCC	TAGCT,AAGCT	263344	PASS	AB=0.433298,0.562053;ABP=219.115,190.038;AC=136,52;AF=0.723404,0.276596;AN=188;AO=8743,3712;CIGAR=1X3M1X,4M1X;DP=12509;DPB=12517;DPRA=0,1.24984;EPP=18988.2,8063.52;EPPR=0;GTI=3;LEN=5,1;MEANALT=2.12766,2.43939;MQM=59.9846,59.9957;MQMR=0;NS=94;NUMALT=2;ODDS=0.64797;PAIRED=0,0;PAIREDR=0;PAO=31,4.5;PQA=1076,0;PQR=0;PRO=4.5;QA=306748,133073;QR=0;RO=0;RPL=8743,3712;RPP=18988.2,8063.52;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=18988.2,8063.52;SAR=8743,3712;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:49:0,28,21:0:0:28,21:981,737:-140.152,-60.329,-51.9002,-80.174,0,-73.8524	1/1:130:0,130,0:0:0:130,0:4600,0:-413.543,-39.1339,0,-413.543,-39.1339,-413.543	1/2:312:0,132,176:0:0:132,176:4640,6328:-893.948,-516.268,-476.532,-377.677,0,-324.696	1/1:292:0,280,12:0:0:280,12:9811,428:-882.614,-84.2884,0,-847.724,-49.3952,-844.111	1/2:85:0,46,38:0:0:46,38:1620,1368:-243.509,-111.622,-97.7745,-131.883,0,-120.444	1/2:26:0,13,13:0:0:13,13:456,468:-75.6512,-38.5463,-34.6329,-37.4602,0,-33.5468	1/2:121:0,61,60:0:0:61,60:2124,2145:-347.968,-175.254,-156.891,-173.067,0,-155.005	1/1:158:0,157,0:0:0:157,0:5532,0:-497.656,-47.2617,0,-497.656,-47.2617,-497.656	1/2:104:0,50,54:0:0:50,54:1745,1925:-299.199,-157.269,-142.218,-142.282,0,-126.027	1/1:136:0,136,0:0:0:136,0:4810,0:-433.064,-40.9401,0,-433.064,-40.9401,-433.064	1/1:22:0,22,0:0:0:22,0:790,0:-71.4254,-6.62266,0,-71.4254,-6.62266,-71.4254	1/1:66:0,66,0:0:0:66,0:2341,0:-210.63,-19.868,0,-210.63,-19.868,-210.63	1/2:58:0,32,26:0:0:32,26:1142,936:-169.831,-76.7327,-67.0997,-93.457,0,-85.6302	1/1:48:0,47,0:0:0:47,0:1642,0:-147.707,-14.1484,0,-147.707,-14.1484,-147.707	1/1:48:0,45,2:0:0:45,2:1591,72:-143.13,-13.5464,0,-137.254,-7.65157,-136.652	1/1:51:0,49,0:0:0:49,0:1724,0:-155.094,-14.7505,0,-155.094,-14.7505,-155.094	1/1:24:0,24,0:0:0:24,0:854,0:-77.181,-7.22472,0,-77.181,-7.22472,-77.181	1/1:23:0,20,2:0:0:20,2:718,72:-64.5887,-6.0206,0,-58.7138,-0.145765,-58.1117	1/1:18:0,17,0:0:0:17,0:600,0:-53.9699,-5.11751,0,-53.9699,-5.11751,-53.9699	1/2:272:0,154,118:0:0:154,118:5362,4232:-781.558,-345.537,-299.179,-436.374,0,-400.853	1/2:244:0,110,134:0:0:110,134:3860,4796:-705.233,-391.098,-357.985,-314.129,0,-273.791	1/2:127:0,65,62:0:0:65,62:2279,2228:-367.572,-182.12,-162.553,-185.807,0,-167.143	1/2:191:0,112,79:0:0:112,79:3960,2779:-549.096,-226.567,-192.851,-322.881,0,-299.1	1/1:89:0,85,4:0:0:85,4:2946,144:-265.021,-25.5876,0,-253.271,-13.4781,-252.067	1/1:101:0,100,1:0:0:100,1:3491,36:-314.051,-30.103,0,-311.113,-26.8058,-310.812	1/1:438:0,434,4:0:0:434,4:15266,140:-1372.86,-130.647,0,-1361.47,-119.264,-1360.27	1/2:346:0,139,206:0:0:139,206:4893,7393:-1001.38,-603.04,-561.197,-398.331,0,-336.318	1/1:28:0,27,1:0:0:27,1:948,36:-85.2749,-8.12781,0,-82.3371,-4.83057,-82.0361	1/2:285:0,144,141:0:0:144,141:5036,5064:-823.07,-413.458,-370.109,-409.967,0,-367.521	1/2:172:0,90,82:0:0:90,82:3183,2948:-499.756,-240.509,-213.416,-259.245,0,-234.56	1/2:215:0,96,119:0:0:96,119:3379,4280:-624.629,-349.553,-320.654,-275.431,0,-239.609	1/2:59:0,10,47:0:0:10,47:356,1688:-166.733,-137.718,-134.708,-29.0288,0,-14.8803	1/1:37:0,37,0:0:0:37,0:1281,0:-115.231,-11.1381,0,-115.231,-11.1381,-115.231	2/2:93:0,1,92:0:0:1,92:36,3308:-297.578,-294.64,-294.339,-27.6948,-24.3975,0	1/2:50:0,8,42:0:0:8,42:280,1504:-145.791,-123.011,-120.603,-23.1311,0,-10.4879	2/2:140:0,10,130:0:0:10,130:359,4657:-418.93,-389.645,-386.635,-39.1339,-9.49058,0	1/1:186:0,186,0:0:0:186,0:6561,0:-590.584,-55.9916,0,-590.584,-55.9916,-590.584	1/1:249:0,247,2:0:0:247,2:8649,72:-778.085,-74.3544,0,-772.21,-68.453,-771.608	1/1:26:0,25,0:0:0:25,0:884,0:-79.519,-7.52575,0,-79.519,-7.52575,-79.519	1/1:2:0,2,0:0:0:2,0:67,0:-6.36304,-0.60206,0,-6.36304,-0.60206,-6.36304	1/1:224:0,224,0:0:0:224,0:7851,0:-706.64,-67.4307,0,-706.64,-67.4307,-706.64	1/2:21:0,13,8:0:0:13,8:461,288:-61.4141,-23.8592,-19.9458,-37.9128,0,-35.5045	1/1:201:0,201,0:0:0:201,0:7107,0:-639.703,-60.507,0,-639.703,-60.507,-639.703	1/1:35:0,35,0:0:0:35,0:1247,0:-112.535,-10.5361,0,-112.535,-10.5361,-112.535	1/1:60:0,60,0:0:0:60,0:2077,0:-187.201,-18.0618,0,-187.201,-18.0618,-187.201	1/2:131:0,62,69:0:0:62,69:2191,2480:-381.12,-202.682,-184.018,-178.794,0,-158.023	1/1:161:0,154,7:0:0:154,7:5399,252:-485.694,-46.3586,0,-465.131,-25.7967,-463.024	1/2:236:0,109,126:0:0:109,126:3811,4524:-679.09,-369.062,-336.25,-310.047,0,-272.118	1/1:134:0,134,0:0:0:134,0:4658,0:-419.4,-40.338,0,-419.4,-40.338,-419.4	1/1:144:0,143,0:0:0:143,0:4994,0:-449.263,-43.0473,0,-449.263,-43.0473,-449.263	1/1:252:0,248,3:0:0:248,3:8678,108:-780.694,-74.6554,0,-771.882,-65.8312,-770.979	2/2:191:0,10,178:0:0:10,178:353,6361:-572.225,-543.48,-540.469,-53.5833,-24.8428,0	1/1:158:0,157,0:0:0:157,0:5479,0:-492.897,-47.2617,0,-492.897,-47.2617,-492.897	1/2:135:0,62,71:0:0:62,71:2168,2556:-384.926,-208.557,-189.893,-176.364,0,-154.991	1/2:122:0,19,103:0:0:19,103:661,3696:-355.58,-301.835,-296.116,-54.0938,0,-23.0877	1/2:280:0,98,181:0:0:98,181:3380,6485:-803.46,-528.886,-499.385,-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chr05	3546459	.	A	C	30229.3	PASS	AB=0.526087;ABP=23.4033;AC=44;AF=0.236559;AN=186;AO=1822;CIGAR=1X;DP=7575;DPB=7575;DPRA=0.946412;EPP=3770.65;EPPR=12305.1;GTI=0;LEN=1;MEANALT=1.04082;MQM=41.8079;MQMR=59.9755;NS=93;NUMALT=1;ODDS=1.32823;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65097;QR=205858;RO=5749;RPL=22;RPP=3770.65;RPPR=12305.1;RPR=1800;RUN=1;SAF=0;SAP=3959.43;SAR=1822;SRF=0;SRP=12486.8;SRR=5749;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:17,10:17:612:10:341:-20.892,0,-47.2856	0/0:118:117,0:117:4200:0:0:0,-35.2205,-377.82	0/1:124:40,84:40:1432:84:3005:-223.212,0,-91.8499	0/0:156:156,0:156:5612:0:0:0,-46.9607,-505.198	0/1:66:37,29:37:1332:29:1036:-69.1299,0,-100.314	0/1:37:19,18:19:680:18:648:-44.9999,0,-50.3911	0/1:96:47,49:47:1680:49:1745:-123.444,0,-122.588	0/0:143:143,0:143:5127:0:0:0,-43.0473,-461.571	0/1:80:41,39:41:1457:39:1400:-95.4331,0,-107.342	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.004	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/1:43:31,12:31:1112:12:432:-25.0153,0,-87.4471	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1589	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/1:201:104,97:104:3728:97:3475:-244.146,0,-275.214	0/1:104:49,55:49:1749:55:1964:-138.039,0,-126.385	0/1:92:32,60:32:1152:60:2144:-161.404,0,-76.2954	0/1:52:27,25:27:968:25:881:-62.1973,0,-71.7792	0/0:96:93,3:93:3321:3:108:0,-19.1529,-289.361	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:255:255,0:255:9152:0:0:0,-76.7626,-823.649	0/1:176:83,93:83:2984:93:3291:-232.437,0,-215.81	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:206:93,113:93:3335:113:4037:-294.845,0,-238.354	0/1:207:83,124:83:2964:124:4452:-322.047,0,-204.68	0/1:90:58,32:58:2084:32:1148:-73.8401,0,-160.729	0/1:6:3,3:3:108:3:108:-7.93977,0,-8.26899	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8204	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:6:2,4:2:72:4:144:-11.0724,0,-5.03054	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.485	0/0:159:159,0:159:5700:0:0:0,-47.8638,-513.112	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:13:12,1:12:432:1:36:0,-0.432695,-35.7405	0/0:186:186,0:186:6650:0:0:0,-55.9916,-598.575	0/1:18:10,8:10:351:8:284:-19.6874,0,-26.5081	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.353	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:43:31,12:31:1116:12:432:-25.7345,0,-87.8074	0/0:109:109,0:109:3888:0:0:0,-32.8123,-350.112	0/1:181:74,106:74:2660:106:3793:-279.124,0,-185.237	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.887	0/0:154:153,1:153:5492:1:36:0,-42.8101,-490.856	0/1:13:7,6:7:248:6:212:-14.8336,0,-18.7508	0/0:169:169,0:169:6057:0:0:0,-50.8741,-545.229	0/1:91:39,52:39:1381:52:1853:-137.379,0,-97.193	0/1:8:2,6:2:72:6:212:-16.4311,0,-4.42848	0/1:118:65,53:65:2317:53:1908:-129.921,0,-173.267	0/0:30:30,0:30:1050:0:0:0,-9.0309,-94.8063	.:.:.:.:.:.:.:.	0/1:14:6,8:6:216:8:280:-20.5378,0,-15.5761	0/1:85:52,33:52:1864:33:1184:-77.2416,0,-142.452	0/1:75:43,32:43:1536:32:1133:-76.9294,0,-115.956	0/1:5:4,1:4:140:1:36:-2.01586,0,-11.4394	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.234	0/1:189:99,90:99:3544:90:3198:-220.829,0,-262.274	0/1:91:43,47:43:1536:47:1677:-118.366,0,-111.227	0/1:77:34,43:34:1215:43:1544:-112.991,0,-86.4764	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/1:160:51,109:51:1832:109:3905:-294.74,0,-116.996	0/1:19:7,12:7:252:12:432:-32.22,0,-17.3094	0/0:81:80,0:80:2856:0:0:0,-24.0824,-257.066	0/1:63:35,28:35:1260:28:1000:-69.552,0,-94.7397	0/1:32:15,17:15:536:17:612:-44.5906,0,-38.9419	0/0:119:118,1:118:4224:1:36:0,-32.3419,-376.856	0/0:55:54,1:54:1944:1:36:0,-13.076,-171.755	0/0:192:192,0:192:6877:0:0:0,-57.7978,-618.98	0/0:154:154,0:154:5514:0:0:0,-46.3586,-496.384	0/1:143:73,70:73:2593:70:2474:-172.56,0,-190.569	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.729	0/1:4:2,2:2:72:2:72:-5.4092,0,-5.6326	0/0:141:141,0:141:5031:0:0:0,-42.4452,-452.935	0/1:78:34,44:34:1220:44:1568:-111.483,0,-86.6265	0/0:149:149,0:149:5352:0:0:0,-44.8535,-481.81	0/1:74:29,45:29:1040:45:1620:-119.665,0,-71.6381	0/1:38:18,20:18:648:20:720:-52.1329,0,-47.2127	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:72:37,35:37:1320:35:1260:-88.5778,0,-97.4254	0/1:20:8,12:8:288:12:432:-31.8344,0,-20.2468	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/0:29:29,0:29:1022:0:0:0,-8.72987,-92.2909	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:76:31,45:31:1099:45:1612:-117.243,0,-76.3412	0/1:50:18,32:18:644:32:1141:-85.6231,0,-43.2391	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.361	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541
chr05	3546465	.	T	C	29343.3	PASS	AB=0.527066;ABP=24.8742;AC=44;AF=0.236559;AN=186;AO=1820;CIGAR=1X;DP=7513;DPB=7513;DPRA=1.0168;EPP=3937.74;EPPR=12267.6;GTI=0;LEN=1;MEANALT=1.01961;MQM=41.7967;MQMR=59.9687;NS=93;NUMALT=1;ODDS=1.63574;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65129;QR=200892;RO=5688;RPL=1818;RPP=3937.74;RPPR=12267.6;RPR=2;RUN=1;SAF=0;SAP=3955.09;SAR=1820;SRF=0;SRP=12354.3;SRR=5688;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:16,11:16:557:11:384:-24.8699,0,-42.3278	0/0:119:119,0:119:4143:0:0:0,-35.8226,-373.052	0/1:120:39,81:39:1355:81:2897:-214.381,0,-86.1186	0/0:157:156,0:156:5464:0:0:0,-46.9607,-491.567	0/1:68:38,30:38:1368:30:1050:-69.7586,0,-102.951	0/1:34:16,18:16:572:18:644:-45.8149,0,-41.5784	0/1:96:49,47:49:1737:47:1688:-118.39,0,-127.714	0/0:140:140,0:140:4990:0:0:0,-42.1442,-449.247	0/1:79:40,38:40:1424:38:1349:-91.227,0,-104.761	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.397	0/0:45:44,0:44:1568:0:0:0,-13.2453,-141.091	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:42:30,12:30:1065:12:432:-25.3163,0,-83.5165	0/0:66:65,0:65:2309:0:0:0,-19.5669,-207.71	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	0/0:66:66,0:66:2337:0:0:0,-19.868,-210.589	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:196:99,97:99:3476:97:3484:-246.877,0,-254.048	0/1:102:47,55:47:1654:55:1964:-138.641,0,-118.439	0/1:92:32,60:32:1129:60:2137:-160.79,0,-74.2216	0/1:54:28,26:28:959:26:932:-65.048,0,-70.3541	0/0:92:89,3:89:3116:3:108:0,-17.9488,-270.918	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.258	0/0:245:245,0:245:8598:0:0:0,-73.7523,-773.822	0/1:175:83,92:83:2972:92:3281:-231.618,0,-215.033	0/0:18:18,0:18:614:0:0:0,-5.41854,-55.577	0/1:210:96,114:96:3417:114:4087:-297.643,0,-244.528	0/1:207:82,125:82:2872:125:4480:-324.369,0,-196.4	0/1:91:59,32:59:2043:32:1144:-73.2192,0,-156.74	0/1:6:3,3:3:108:3:108:-7.93977,0,-8.26899	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.464	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.338	0/1:7:3,4:3:93:4:144:-10.7714,0,-6.56952	0/0:128:128,0:128:4556:0:0:0,-38.5318,-410.208	0/0:155:154,1:154:5444:1:36:0,-43.179,-486.609	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/0:13:12,1:12:417:1:21:0,-1.81768,-35.7645	0/0:181:181,0:181:6354:0:0:0,-54.4864,-571.956	0/1:18:10,8:10:360:8:288:-19.9905,0,-27.3258	0/0:108:108,0:108:3780:0:0:0,-32.5112,-340.391	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:43:30,13:30:1057:13:468:-28.9282,0,-82.4947	0/0:106:106,0:106:3731:0:0:0,-31.9092,-335.99	0/1:181:76,105:76:2705:105:3776:-277.389,0,-189.204	0/0:98:98,0:98:3471:0:0:0,-29.5009,-312.591	0/0:124:123,1:123:4270:1:36:0,-33.7294,-380.868	0/0:159:158,1:158:5630:1:36:0,-44.3153,-503.272	0/1:12:6,6:6:216:6:216:-15.258,0,-16.1782	0/0:161:161,0:161:5688:0:0:0,-48.4658,-512.037	0/1:90:38,52:38:1330:52:1857:-138,0,-92.903	0/1:8:2,6:2:72:6:216:-16.7356,0,-4.42848	0/1:119:66,53:66:2345:53:1900:-128.92,0,-175.481	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7956	.:.:.:.:.:.:.:.	0/1:13:5,8:5:180:8:284:-21.081,0,-12.6387	0/1:85:52,33:52:1814:33:1184:-76.9191,0,-137.95	0/1:78:45,33:45:1608:33:1179:-79.9005,0,-121.53	0/1:5:4,1:4:144:1:36:-2.01586,0,-11.8085	0/0:133:133,0:133:4727:0:0:0,-40.037,-425.585	0/1:185:95,90:95:3355:90:3228:-223.566,0,-246.474	0/1:87:41,46:41:1453:46:1652:-116.981,0,-104.874	0/1:78:34,44:34:1193:44:1580:-115.858,0,-84.1928	0/0:103:103,0:103:3600:0:0:0,-31.0061,-324.134	0/1:158:49,109:49:1748:109:3912:-295.386,0,-110.041	0/1:21:8,13:8:284:13:468:-34.7506,0,-19.5817	0/0:80:80,0:80:2841:0:0:0,-24.0824,-255.926	0/1:62:34,28:34:1224:28:1000:-69.8066,0,-91.8023	0/1:32:15,17:15:536:17:612:-44.5906,0,-38.9419	0/0:119:118,1:118:4164:1:36:0,-32.3419,-371.456	0/0:53:52,1:52:1844:1:36:0,-12.4739,-162.76	0/0:187:187,0:187:6549:0:0:0,-56.2926,-589.478	0/0:154:153,0:153:5397:0:0:0,-46.0576,-485.502	0/1:139:73,66:73:2571:66:2353:-163.071,0,-189.793	0/0:70:70,0:70:2455:0:0:0,-21.0721,-221.187	0/1:4:2,2:2:72:2:72:-5.4092,0,-5.6326	0/0:135:135,0:135:4738:0:0:0,-40.639,-426.578	0/1:79:35,44:35:1245:44:1546:-109.112,0,-88.5713	0/0:150:150,0:150:5335:0:0:0,-45.1545,-480.279	0/1:76:31,45:31:1100:45:1620:-119.063,0,-76.432	0/1:38:18,20:18:633:20:720:-52.1329,0,-45.8559	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:72:38,34:38:1341:34:1224:-85.4088,0,-99.3115	0/1:20:8,12:8:284:12:428:-31.5327,0,-19.8828	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:76:31,45:31:1089:45:1612:-117.243,0,-75.439	0/1:51:18,33:18:588:33:1184:-88.693,0,-37.8721	0/0:104:104,0:104:3685:0:0:0,-31.3071,-331.854	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545
chr05	3566493	.	C	G	83235.1	PASS	AB=0.479839;ABP=11.7662;AC=142;AF=0.755319;AN=188;AO=3856;CIGAR=1X;DP=5150;DPB=5150;DPRA=55.3656;EPP=8032.38;EPPR=2735.27;GTI=1;LEN=1;MEANALT=1;MQM=59.9562;MQMR=59.9281;NS=94;NUMALT=1;ODDS=1.9762;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137927;QR=46230;RO=1294;RPL=3816;RPP=8032.38;RPPR=2735.27;RPR=40;RUN=1;SAF=0;SAP=8376.21;SAR=3856;SRF=0;SRP=2812.9;SRR=1294;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:134:64,70:64:2288:70:2504:-185.261,0,-165.839	1/1:98:0,98:0:0:98:3504:-315.563,-29.5009,0	0/1:22:15,7:15:536:7:248:-16.0415,0,-41.9522	0/1:28:9,19:9:324:19:680:-53.1003,0,-21.077	0/1:70:26,44:26:902:44:1580:-121.419,0,-60.4182	1/1:71:0,71:0:0:71:2521:-227.142,-21.3731,0	0/1:37:14,23:14:504:23:824:-63.3452,0,-34.56	1/1:31:0,31:0:0:31:1105:-99.7603,-9.33193,0	1/1:54:0,54:0:0:54:1927:-172.342,-16.2556,0	1/1:64:0,64:0:0:64:2293:-206.631,-19.2659,0	0/1:65:40,25:40:1421:25:890:-60.852,0,-107.596	1/1:69:0,69:0:0:69:2460:-221.653,-20.7711,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:52:0,52:0:0:52:1857:-167.397,-15.6536,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:32:0,32:0:0:32:1137:-102.634,-9.63296,0	0/1:93:61,32:61:2143:32:1148:-75.634,0,-165.137	0/1:65:32,33:32:1144:33:1180:-86.9411,0,-83.7026	0/1:72:53,19:53:1900:19:684:-40.2162,0,-149.604	0/1:45:26,19:26:936:19:684:-48.344,0,-71.0131	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	0/1:155:66,89:66:2372:89:3196:-241.203,0,-167.076	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:134:68,66:68:2421:66:2352:-171.601,0,-177.807	0/1:54:33,21:33:1184:21:756:-52.1116,0,-90.6127	0/1:49:29,20:29:1044:20:710:-49.475,0,-79.5243	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	1/1:153:0,153:0:0:153:5496:-494.764,-46.0576,0	1/1:61:0,61:0:0:61:2163:-194.934,-18.3628,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:61:1,60:1:36:60:2152:-190.346,-14.7646,0	0/1:31:10,21:10:360:21:752:-58.6743,0,-23.4124	1/1:70:0,70:0:0:70:2484:-223.806,-21.0721,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	0/1:53:28,25:28:1008:25:900:-65.3664,0,-75.0818	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:90:42,48:42:1474:48:1724:-128.353,0,-105.858	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:85:1,84:1:36:84:2981:-264.922,-21.9893,0	1/1:71:0,71:0:0:71:2512:-226.331,-21.3731,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:35:14,21:14:504:21:732:-55.6626,0,-35.162	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:77:47,30:47:1688:30:1076:-73.9735,0,-128.972	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:35:22,13:22:792:13:468:-31.9236,0,-61.0696	0/1:102:55,47:55:1972:47:1684:-121.142,0,-146.999	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:170:0,170:0:0:170:6070:-546.401,-51.1751,0	0/1:102:56,46:56:2008:46:1652:-118.263,0,-150.288	0/1:27:16,11:16:572:11:394:-27.6716,0,-43.6856	0/1:38:23,15:23:820:15:540:-37.4974,0,-62.6834	1/1:65:0,65:0:0:65:2327:-209.689,-19.567,0	0/1:116:65,51:65:2302:51:1809:-128.17,0,-172.518	0/1:37:14,23:14:504:23:820:-62.9844,0,-34.56	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:32:14,18:14:504:18:648:-49.0189,0,-36.0651	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	1/1:79:1,78:1:36:78:2777:-246.568,-20.1831,0	1/1:37:0,37:0:0:37:1313:-118.471,-11.1381,0	1/1:35:0,35:0:0:35:1243:-111.856,-10.5361,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	0/1:90:46,44:46:1622:44:1582:-115.579,0,-119.171	1/1:54:0,54:0:0:54:1935:-174.426,-16.2556,0	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:126:67,59:67:2408:59:2107:-151.969,0,-179.046	1/1:117:0,117:0:0:117:4197:-377.909,-35.2205,0	0/1:52:25,27:25:900:27:972:-72.1443,0,-65.6675	0/1:67:30,37:30:1080:37:1332:-100.013,0,-77.3442	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:81:43,38:43:1548:38:1360:-98.3172,0,-115.23	0/1:15:6,9:6:216:9:316:-24.2634,0,-15.2751	1/1:57:0,57:0:0:57:2041:-183.961,-17.1587,0	1/1:60:0,60:0:0:60:2156:-194.304,-18.0618,0	1/1:46:0,46:0:0:46:1643:-148.158,-13.8474,0	0/1:110:51,59:51:1805:59:2107:-156.786,0,-129.617	0/1:41:28,13:28:1008:13:468:-30.1174,0,-78.6941	1/1:83:0,83:0:0:83:2956:-266.272,-24.9855,0	1/1:74:0,74:0:0:74:2651:-238.835,-22.2762,0
chr05	3571537	.	C	T	30688.7	PASS	AB=0.581402;ABP=201.691;AC=46;AF=0.244681;AN=188;AO=2022;CIGAR=1X;DP=7188;DPB=7188;DPRA=1.13012;EPP=4393.73;EPPR=11207.8;GTI=4;LEN=1;MEANALT=1.07692;MQM=37.2671;MQMR=52.2694;NS=94;NUMALT=1;ODDS=0.895152;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72248;QR=184095;RO=5160;RPL=0;RPP=4393.73;RPPR=11207.8;RPR=2022;RUN=1;SAF=2022;SAP=4393.73;SAR=0;SRF=5160;SRP=11207.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:16,7:16:576:7:252:-14.9825,0,-45.2019	0/0:110:110,0:110:3920:0:0:0,-33.1133,-352.614	0/1:171:69,102:69:2464:102:3645:-257.761,0,-170.305	0/0:182:182,0:182:6500:0:0:0,-54.7875,-582.311	0/1:62:42,20:42:1500:20:720:-39.5815,0,-115.008	0/1:48:21,27:21:752:27:972:-68.8897,0,-53.2463	0/1:98:41,57:41:1460:57:2044:-140.787,0,-101.865	0/0:90:89,1:89:3176:1:36:0,-23.7051,-281.758	0/1:87:36,51:36:1288:51:1832:-130.332,0,-89.9187	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.32	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.3785	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.386	0/1:33:12,21:12:424:21:739:-53.6788,0,-28.5281	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.0212	0/0:25:25,0:25:871:0:0:0,-7.52575,-78.533	0/0:23:23,0:23:799:0:0:0,-6.92369,-71.846	0/0:37:37,0:37:1319:0:0:0,-11.1381,-118.781	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8339	0/0:12:12,0:12:416:0:0:0,-3.61236,-37.4456	0/1:174:70,104:70:2504:104:3724:-260.372,0,-172.67	0/1:86:24,62:24:852:62:2218:-152.242,0,-50.7438	0/1:108:28,80:28:996:80:2845:-211.278,0,-57.2231	0/1:101:45,56:45:1612:56:2008:-137.888,0,-114.467	0/0:107:100,7:100:3576:7:252:0,-11.6645,-299.808	0/0:77:77,0:77:2768:0:0:0,-23.1793,-248.088	0/0:265:265,0:265:9452:0:0:0,-79.7729,-849.098	0/1:221:100,121:100:3576:121:4305:-279.058,0,-253.86	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4623	0/1:309:132,177:132:4720:177:6326:-446.82,0,-330.966	0/1:139:50,89:50:1796:89:3173:-213.63,0,-118.961	0/1:97:37,59:37:1312:59:2106:-147.959,0,-88.0797	0/1:13:9,4:9:324:4:140:-7.69586,0,-25.4319	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.7691	1/1:2:0,2:0:0:2:72:-6.43644,-0.60206,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.6945	0/1:7:5,2:5:176:2:72:-4.32923,0,-14.0628	0/0:105:105,0:105:3743:0:0:0,-31.6081,-335.668	0/0:194:194,0:194:6932:0:0:0,-58.3998,-620.609	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.064	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.65903	0/0:168:167,1:167:5932:1:36:0,-47.3854,-527.329	0/1:27:13,14:13:464:14:496:-32.1656,0,-33.7739	0/0:162:161,0:161:5751:0:0:0,-48.4658,-513.841	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.7727	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.0518	0/1:132:43,89:43:1524:89:3158:-230.512,0,-96.6488	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.671	0/1:164:76,88:76:2682:88:3152:-214.602,0,-191.516	0/0:112:112,0:112:3963:0:0:0,-33.7154,-355.403	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.415	0/0:203:203,0:203:7252:0:0:0,-61.1091,-650.585	0/1:6:4,2:4:140:2:68:-4.29936,0,-11.1114	0/0:126:125,1:125:4456:1:36:0,-34.5062,-397.07	0/1:33:11,22:11:396:22:792:-58.1957,0,-24.4554	0/1:13:9,4:9:324:4:140:-8.35723,0,-24.9785	0/1:114:39,74:39:1392:74:2652:-177.252,0,-90.571	0/0:44:43,1:43:1525:1:36:0,-9.89917,-133.87	0/1:9:3,6:3:108:6:216:-16.1205,0,-7.34793	0/1:17:13,4:13:468:4:144:-7.54982,0,-37.2604	0/1:89:35,54:35:1240:54:1929:-128.177,0,-84.5527	0/1:51:19,32:19:680:32:1148:-81.0757,0,-46.0247	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0498	0/0:152:152,0:152:5428:0:0:0,-45.7566,-487.76	0/1:229:110,118:110:3944:118:4224:-285.669,0,-284.489	0/1:46:16,30:16:561:30:1064:-72.0482,0,-36.7174	0/1:105:45,60:45:1597:60:2126:-146.35,0,-112.025	0/0:127:125,1:125:4472:1:36:0,-34.9182,-398.101	0/1:120:22,98:22:792:98:3493:-256.499,0,-35.2926	0/1:5:2,3:2:72:3:108:-7.4202,0,-5.30952	0/0:67:66,0:66:2360:0:0:0,-19.868,-212.028	0/1:54:25,29:25:887:29:1044:-73.2295,0,-63.7771	0/1:19:4,15:4:144:15:536:-39.5034,0,-7.56058	0/0:153:153,0:153:5484:0:0:0,-46.0576,-493.082	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.824	0/0:127:127,0:127:4532:0:0:0,-38.2308,-405.578	0/0:94:94,0:94:3356:0:0:0,-28.2968,-301.445	0/1:89:50,39:50:1796:39:1400:-92.2196,0,-134.98	0/0:76:75,1:75:2684:1:36:0,-19.4907,-238.185	0/1:10:9,1:9:320:1:36:-0.3773,0,-26.1059	0/0:74:74,0:74:2652:0:0:0,-22.2762,-236.447	0/1:109:54,55:54:1932:55:1968:-135.468,0,-141.177	0/0:210:210,0:210:7472:0:0:0,-63.2163,-670.301	0/1:55:24,31:24:849:31:1097:-74.8311,0,-59.9828	0/1:26:11,15:11:392:15:540:-37.6123,0,-26.6026	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.205	0/1:55:19,36:19:672:36:1292:-92.303,0,-44.0052	0/1:28:14,14:14:500:14:504:-34.8092,0,-36.8656	0/0:40:40,0:40:1415:0:0:0,-12.0412,-127.519	0/0:32:32,0:32:1132:0:0:0,-9.63296,-102.024	0/0:8:8,0:8:276:0:0:0,-2.40824,-25.0896	0/1:48:26,22:26:928:22:792:-50.0793,0,-68.9265	0/1:22:9,13:9:324:13:468:-32.5972,0,-22.7689	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.386	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.0237
chr05	3598780	.	A	G	159207	PASS	AB=0.487191;ABP=9.40765;AC=141;AF=0.75;AN=188;AO=7524;CIGAR=1X;DP=9862;DPB=9862;DPRA=53.0108;EPP=16341.2;EPPR=5062.54;GTI=2;LEN=1;MEANALT=1.06452;MQM=59.6233;MQMR=59.9056;NS=94;NUMALT=1;ODDS=6.17845;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268766;QR=83302;RO=2330;RPL=0;RPP=16341.2;RPPR=5062.54;RPR=7524;RUN=1;SAF=7524;SAP=16341.2;SAR=0;SRF=2330;SRP=5062.54;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:11,12:11:396:12:432:-32.2533,0,-29.0591	1/1:135:0,135:0:0:135:4829:-434.377,-40.6391,0	0/1:241:119,122:119:4241:122:4340:-318.116,0,-309.313	1/1:224:0,224:0:0:224:8003:-719.077,-67.4307,0	0/1:98:53,45:53:1877:45:1589:-113.788,0,-139.706	0/1:35:21,14:21:752:14:500:-34.4807,0,-57.4702	0/1:116:46,70:46:1633:70:2475:-188.055,0,-112.337	1/1:128:3,125:3:108:125:4428:-388.571,-28.4567,0	0/1:111:55,56:55:1945:56:2002:-147.02,0,-141.878	1/1:65:0,64:0:0:64:2296:-206.686,-19.2659,0	1/1:22:0,22:0:0:22:788:-71.2439,-6.62266,0	1/1:62:0,62:0:0:62:2228:-200.776,-18.6639,0	0/1:46:16,30:16:576:30:1065:-82.296,0,-38.3276	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:47:0,47:0:0:47:1650:-148.774,-14.1484,0	1/1:38:0,38:0:0:38:1364:-123.029,-11.4391,0	1/1:49:0,49:0:0:49:1764:-158.994,-14.7505,0	1/1:36:0,36:0:0:36:1292:-116.556,-10.8371,0	1/1:25:2,23:2:72:23:817:-67.0058,-0.689028,0	0/1:274:157,117:157:5640:117:4181:-293.966,0,-425.213	0/1:121:53,68:53:1908:68:2408:-180.55,0,-135.573	0/1:265:174,91:174:6218:91:3234:-211.497,0,-479.94	0/1:90:48,42:48:1716:42:1500:-108.202,0,-127.633	1/1:172:7,164:7:248:164:5861:-504.885,-29.1711,0	1/1:99:0,99:0:0:99:3552:-319.841,-29.802,0	1/1:440:0,440:0:0:440:15773:-1419.15,-132.453,0	0/1:274:127,147:127:4541:147:5276:-392.35,0,-326.369	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:444:215,229:215:7686:229:8151:-599.839,0,-558.112	0/1:135:62,73:62:2224:73:2624:-195.691,0,-159.785	0/1:121:74,47:74:2648:47:1688:-115.775,0,-202.142	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:6:4,2:4:144:2:72:-5.02195,0,-11.5074	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:136:0,136:0:0:136:4854:-436.946,-40.9401,0	1/1:290:1,288:1:36:288:10305:-922.819,-83.7592,0	1/1:57:0,57:0:0:57:2040:-183.786,-17.1587,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:146:9,137:9:324:137:4875:-409.337,-14.4445,0	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	1/1:152:0,152:0:0:152:5448:-490.368,-45.7566,0	1/1:43:0,43:0:0:43:1540:-138.878,-12.9443,0	1/1:41:0,41:0:0:41:1461:-131.779,-12.3422,0	0/1:60:29,31:29:1028:31:1085:-79.8935,0,-74.7712	1/1:188:0,188:0:0:188:6733:-605.722,-56.5936,0	0/1:180:100,80:100:3596:80:2837:-201.091,0,-268.653	1/1:141:0,141:0:0:141:5038:-453.556,-42.4452,0	1/1:157:0,157:0:0:157:5571:-501.248,-47.2617,0	1/1:271:1,270:1:32:270:9621:-861.786,-78.3798,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:137:0,137:0:0:137:4911:-442.123,-41.2411,0	0/1:43:24,19:24:852:19:680:-48.1552,0,-64.0561	0/1:16:8,8:8:288:8:280:-20.7228,0,-21.4055	0/1:127:73,54:73:2609:54:1940:-136.632,0,-196.826	1/1:24:0,24:0:0:24:864:-77.1426,-7.22472,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:20:8,12:8:273:12:432:-33.2006,0,-18.8796	0/1:76:47,29:47:1677:29:1029:-70.0259,0,-128.203	0/1:112:58,54:58:2068:54:1940:-141.132,0,-152.676	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:223:0,220:0:0:220:7858:-706.577,-66.2266,0	0/1:290:127,163:127:4544:163:5845:-438.671,0,-320.964	0/1:74:32,42:32:1144:42:1508:-113.738,0,-80.9933	0/1:104:55,49:55:1964:49:1748:-126.296,0,-145.728	1/1:180:0,180:0:0:180:6394:-575.507,-54.1854,0	0/1:144:90,54:90:3220:54:1914:-129.183,0,-246.657	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:82:0,82:0:0:82:2944:-265.123,-24.6845,0	0/1:65:38,27:38:1349:27:972:-68.23,0,-102.141	0/1:26:16,10:16:564:10:354:-24.3707,0,-43.2635	1/1:144:0,144:0:0:144:5149:-463.443,-43.3483,0	1/1:92:0,92:0:0:92:3296:-296.828,-27.6948,0	1/1:131:1,130:1:36:130:4627:-412.965,-35.8367,0	1/1:168:0,168:0:0:168:6028:-542.593,-50.573,0	0/1:188:95,92:95:3404:92:3285:-239.163,0,-249.914	1/1:121:2,119:2:72:119:4261:-376.471,-29.5879,0	0/1:14:5,9:5:180:9:324:-25.2832,0,-12.3376	1/1:144:0,144:0:0:144:5108:-459.836,-43.3483,0	0/1:139:59,80:59:2116:80:2853:-215.15,0,-148.865	1/1:306:1,304:1:36:304:10881:-975.562,-88.5558,0	0/1:73:37,36:37:1332:36:1288:-94.2413,0,-98.2072	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	1/1:61:0,61:0:0:61:2188:-197.174,-18.3628,0	0/1:107:52,55:52:1849:55:1938:-142.482,0,-134.478	0/1:26:7,19:7:252:19:680:-53.6942,0,-15.2022	1/1:65:0,65:0:0:65:2332:-210.131,-19.567,0	1/1:50:0,50:0:0:50:1784:-160.786,-15.0515,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:60:36,24:36:1292:24:864:-60.0069,0,-98.522	0/1:42:24,18:24:864:18:648:-46.0086,0,-65.4393	1/1:96:0,96:0:0:96:3429:-308.795,-28.8989,0	1/1:69:0,69:0:0:69:2468:-222.283,-20.7711,0
chr05	3598940	.	A	T	41970.2	PASS	AB=0.512216;ABP=9.16433;AC=47;AF=0.25;AN=188;AO=2451;CIGAR=1X;DP=10456;DPB=10456;DPRA=1.2923;EPP=5221.57;EPPR=16476.5;GTI=1;LEN=1;MEANALT=1.07018;MQM=59.763;MQMR=59.9826;NS=94;NUMALT=1;ODDS=9.97101;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87601;QR=285765;RO=7993;RPL=2440;RPP=5230.17;RPPR=16476.5;RPR=11;RUN=1;SAF=1;SAP=5316.61;SAR=2450;SRF=0;SRP=17359.6;SRR=7993;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:18,32:18:648:32:1152:-88.9382,0,-43.6004	0/0:151:151,0:151:5377:0:0:0,-45.4555,-484.061	0/1:119:71,48:71:2548:48:1701:-117.539,0,-193.748	0/0:326:325,1:325:11594:1:36:0,-94.5375,-1039.66	0/1:109:49,60:49:1741:60:2156:-161.49,0,-124.16	0/1:97:41,56:41:1464:56:2012:-152.14,0,-102.856	0/1:83:41,42:41:1463:42:1497:-110.032,0,-106.98	0/0:210:208,2:208:7428:2:72:0,-56.3796,-661.729	0/1:122:65,57:65:2328:57:2024:-145.706,0,-173.054	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.766	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.457	0/0:55:54,0:54:1922:0:0:0,-16.2556,-172.896	0/1:46:18,28:18:648:28:1008:-77.1881,0,-44.8045	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.231	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:43:42,0:42:1496:0:0:0,-12.6433,-134.575	0/1:271:138,133:138:4956:133:4763:-347.244,0,-364.608	0/1:162:75,87:75:2672:87:3101:-230.541,0,-191.958	0/1:202:63,139:63:2247:139:4979:-387.393,0,-141.685	0/1:74:47,27:47:1680:27:972:-65.5217,0,-129.211	0/1:107:96,11:96:3421:11:394:-3.58819,0,-275.893	0/0:102:102,0:102:3628:0:0:0,-30.7051,-326.725	0/0:439:435,1:435:15554:1:36:0,-128.011,-1395.96	0/1:273:124,149:124:4400:149:5311:-395.915,0,-313.976	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:348:205,143:205:7329:143:5095:-353.766,0,-554.898	0/1:176:94,82:94:3372:82:2932:-211.133,0,-250.714	0/1:165:80,85:80:2819:85:3031:-223.316,0,-204.279	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3825	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:23:15,8:15:536:8:276:-17.5408,0,-41.6502	0/0:141:141,0:141:5040:0:0:0,-42.4452,-453.747	0/0:280:278,2:278:9932:2:72:0,-77.4517,-886.983	0/0:46:45,0:45:1612:0:0:0,-13.5463,-145.01	0/0:13:12,0:12:417:0:0:0,-3.61236,-37.5013	0/0:181:176,5:176:6309:5:180:0,-37.9344,-551.346	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	0/0:153:153,0:153:5465:0:0:0,-46.0576,-491.978	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/1:98:51,47:51:1817:47:1688:-122.706,0,-134.308	0/0:143:142,0:142:5062:0:0:0,-42.7463,-455.364	0/1:227:125,102:125:4472:102:3659:-260.67,0,-334.315	0/0:140:140,0:140:4997:0:0:0,-42.1442,-449.854	0/0:194:192,2:192:6884:2:72:0,-51.5631,-612.79	0/0:214:214,0:214:7692:0:0:0,-64.4204,-692.31	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:203:203,0:203:7283:0:0:0,-61.1091,-655.518	0/1:74:28,46:28:995:46:1648:-126.328,0,-67.5878	0/1:25:15,10:15:540:10:360:-25.2176,0,-41.4108	0/1:133:59,74:59:2080:74:2648:-198.528,0,-147.431	0/0:34:33,1:33:1184:1:36:0,-6.63674,-103.27	0/1:29:7,22:7:248:22:792:-62.8676,0,-13.9343	0/1:42:11,31:11:388:31:1097:-86.3898,0,-22.6141	0/1:104:51,53:51:1815:53:1880:-138.172,0,-132.324	0/1:77:40,37:40:1436:37:1326:-96.4435,0,-106.358	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:276:276,0:276:9875:0:0:0,-83.0843,-888.693	0/1:231:128,103:128:4573:103:3665:-260.464,0,-342.197	0/1:71:27,44:27:968:44:1549:-118.327,0,-66.0627	0/1:121:69,52:69:2464:52:1860:-131.252,0,-185.59	0/0:184:184,0:184:6592:0:0:0,-55.3895,-593.357	0/1:192:57,135:57:2044:135:4824:-376.479,0,-126.434	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/0:113:111,2:111:3980:2:72:0,-27.1797,-351.552	0/1:75:26,49:26:936:49:1760:-136.106,0,-61.9822	0/1:35:18,17:18:640:17:608:-44.516,0,-47.3933	0/0:131:130,0:130:4660:0:0:0,-39.1339,-419.201	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:158:158,0:158:5637:0:0:0,-47.5627,-507.451	0/0:229:229,0:229:8220:0:0:0,-68.9359,-739.809	0/1:170:76,94:76:2713:94:3368:-251.828,0,-193.237	0/0:116:116,0:116:4153:0:0:0,-34.9195,-373.934	0/1:28:13,15:13:464:15:540:-40.5077,0,-33.6687	0/0:184:184,0:184:6604:0:0:0,-55.3895,-594.438	0/1:107:52,54:52:1864:54:1928:-141.527,0,-135.77	0/0:353:352,1:352:12596:1:36:0,-102.665,-1129.87	0/1:82:38,43:38:1364:43:1540:-114.15,0,-98.3175	0/1:45:22,23:22:792:23:828:-61.2962,0,-58.0593	0/0:35:35,0:35:1226:0:0:0,-10.536,-110.639	0/1:96:42,53:42:1504:53:1888:-141.15,0,-106.697	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2127	0/0:67:67,0:67:2376:0:0:0,-20.169,-214.096	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.326	0/0:21:21,0:21:733:0:0:0,-6.32163,-66.2897	0/1:65:35,30:35:1252:30:1076:-77.5859,0,-93.4181	0/1:43:6,37:6:216:37:1321:-106.24,0,-6.84622	0/0:82:80,2:80:2868:2:72:0,-17.8477,-251.52	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859
chr05	3604643	.	T	C	63235.6	PASS	AB=0.516327;ABP=15.8444;AC=46;AF=0.244681;AN=188;AO=2881;CIGAR=1X;DP=12843;DPB=12843;DPRA=0.872235;EPP=6259.02;EPPR=21626.5;GTI=1;LEN=1;MEANALT=1.01852;MQM=48.7518;MQMR=59.8859;NS=94;NUMALT=1;ODDS=0.130612;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102621;QR=354624;RO=9958;RPL=1096;RPP=360.818;RPPR=414.686;RPR=1785;RUN=1;SAF=1096;SAP=360.818;SAR=1785;SRF=4292;SRP=414.686;SRR=5666;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:35,12:35:1234:12:414:-21.3274,0,-95.8494	0/0:153:153,0:153:5458:0:0:0,-46.0576,-491.348	0/1:252:133,119:133:4719:119:4245:-292.685,0,-348.235	0/0:206:206,0:206:7362:0:0:0,-62.0122,-662.627	0/1:100:32,68:32:1152:68:2432:-185.351,0,-73.8871	0/1:116:45,71:45:1589:71:2533:-189.37,0,-108.377	0/1:178:89,89:89:3126:89:3167:-230.059,0,-227.981	0/0:226:226,0:226:8053:0:0:0,-68.0328,-724.675	0/1:109:69,40:69:2453:40:1413:-87.609,0,-188.211	0/0:174:174,0:174:6203:0:0:0,-52.3792,-558.341	0/0:106:106,0:106:3791:0:0:0,-31.9092,-341.382	0/0:143:142,0:142:5023:0:0:0,-42.7463,-451.856	0/1:121:60,61:60:2137:61:2171:-151.745,0,-156.171	0/0:138:138,0:138:4887:0:0:0,-41.5421,-439.974	0/0:111:111,0:111:3952:0:0:0,-33.4143,-355.869	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:113:113,0:113:4008:0:0:0,-34.0164,-360.892	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.861	0/1:212:88,124:88:3118:124:4433:-327.941,0,-217.014	0/1:146:67,79:67:2408:79:2797:-200.685,0,-173.026	0/1:70:17,53:17:595:53:1896:-147.815,0,-32.8046	0/1:138:75,63:75:2679:63:2248:-156.481,0,-199.712	0/0:130:123,7:123:4369:7:237:0,-17.5028,-371.755	0/0:72:71,0:71:2516:0:0:0,-21.3731,-226.328	0/0:480:479,0:479:17035:0:0:0,-144.193,-1532.38	0/1:301:159,142:159:5679:142:5041:-354.627,0,-420.083	0/0:61:61,0:61:2164:0:0:0,-18.3628,-195.027	0/1:250:116,134:116:4152:134:4787:-350.589,0,-298.576	0/1:174:63,111:63:2248:111:3973:-297.418,0,-150.195	0/1:148:81,66:81:2883:66:2359:-164.866,0,-214.726	0/1:16:6,10:6:216:10:360:-27.8778,0,-14.974	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:6:4,2:4:144:2:72:-5.01335,0,-11.5074	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:11:7,4:7:233:4:144:-9.46497,0,-17.983	0/0:327:327,0:327:11645:0:0:0,-98.4368,-1047.92	0/0:170:170,0:170:6031:0:0:0,-51.1751,-542.895	0/0:129:129,0:129:4567:0:0:0,-38.8329,-410.938	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:185:179,6:179:6400:6:212:0,-36.5862,-556.719	0/1:68:38,30:38:1351:30:1066:-72.7407,0,-101.42	0/0:155:155,0:155:5487:0:0:0,-46.6596,-493.956	0/0:107:107,0:107:3825:0:0:0,-32.2102,-344.436	0/0:92:92,0:92:3266:0:0:0,-27.6948,-294.161	0/1:126:69,57:69:2453:57:2037:-143.377,0,-183.094	0/0:199:199,0:199:7061:0:0:0,-59.905,-635.285	0/1:259:139,120:139:4987:120:4277:-301.491,0,-370.152	0/0:146:146,0:146:5198:0:0:0,-43.9504,-467.956	0/0:214:213,1:213:7587:1:36:0,-60.8247,-679.267	0/0:106:106,0:106:3768:0:0:0,-31.9092,-339.189	0/1:7:1,6:1:36:6:216:-17.3691,0,-1.49106	0/0:191:190,1:190:6790:1:36:0,-53.9075,-607.578	0/1:90:50,40:50:1800:40:1440:-100.238,0,-135.189	0/1:32:18,14:18:648:14:504:-35.2737,0,-49.0189	0/1:189:90,99:90:3195:99:3517:-251.441,0,-230.877	0/0:72:72,0:72:2561:0:0:0,-21.6742,-230.737	0/1:8:5,3:5:180:3:108:-7.59377,0,-14.1438	0/1:12:8,4:8:269:4:144:-9.64098,0,-20.9238	0/1:96:54,42:54:1909:42:1501:-99.9188,0,-143.187	0/1:172:80,92:80:2847:92:3255:-235.003,0,-204.691	0/1:6:3,3:3:108:3:108:-8.17494,0,-8.26899	0/0:253:253,0:253:9044:0:0:0,-76.1606,-813.746	0/1:260:119,141:119:4240:141:5036:-371.244,0,-303.511	0/1:86:46,40:46:1633:40:1415:-98.8687,0,-121.368	0/1:107:38,69:38:1345:69:2433:-185.322,0,-88.5102	0/0:261:261,0:261:9277:0:0:0,-78.5688,-834.488	0/1:192:57,135:57:2048:135:4793:-367.726,0,-126.793	0/1:53:20,33:20:701:33:1167:-85.8018,0,-47.4525	0/0:95:95,0:95:3351:0:0:0,-28.5978,-301.434	0/1:131:65,66:65:2328:66:2354:-170.885,0,-170.345	0/1:40:14,26:14:487:26:919:-69.7865,0,-32.118	0/0:167:167,0:167:5926:0:0:0,-50.272,-533.206	0/0:114:114,0:114:4083:0:0:0,-34.3174,-367.633	0/0:268:268,0:268:9558:0:0:0,-80.676,-860.04	0/0:216:216,0:216:7729:0:0:0,-65.0225,-695.533	0/1:204:128,76:128:4573:76:2720:-175.338,0,-349.459	0/0:183:182,1:182:6499:1:36:0,-51.7009,-580.244	0/1:12:7,5:7:244:5:180:-12.7126,0,-18.6871	0/0:187:186,1:186:6643:1:36:0,-52.8381,-594.49	0/1:150:78,72:78:2789:72:2553:-178.211,0,-206.094	0/0:321:321,0:321:11427:0:0:0,-96.6306,-1028.15	0/1:123:56,67:56:1980:67:2395:-175.172,0,-141.445	0/1:108:53,55:53:1900:55:1955:-141.104,0,-138.767	0/0:127:127,0:127:4512:0:0:0,-38.2308,-406.249	0/1:230:121,109:121:4336:109:3891:-276.867,0,-321.178	0/1:68:35,33:35:1252:33:1180:-83.8572,0,-92.515	0/0:134:133,1:133:4742:1:36:0,-36.7397,-423.341	0/0:89:89,0:89:3191:0:0:0,-26.7917,-287.366	0/0:61:61,0:61:2153:0:0:0,-18.3628,-194.031	0/1:182:91,91:91:3255:91:3227:-228.337,0,-238.383	0/1:137:51,86:51:1783:86:3080:-231.736,0,-119.48	0/0:170:170,0:170:6076:0:0:0,-51.1751,-546.793	0/0:178:177,1:177:6277:1:36:0,-50.2843,-561.728
chr05	3604654	.	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chr05	3604879	.	G	T	35114.5	PASS	AB=0.506471;ABP=4.49984;AC=46;AF=0.244681;AN=188;AO=2094;CIGAR=1X;DP=9217;DPB=9217;DPRA=1.09781;EPP=4550.07;EPPR=15463.9;GTI=1;LEN=1;MEANALT=1.05172;MQM=59.9737;MQMR=59.9862;NS=94;NUMALT=1;ODDS=0.128751;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74900;QR=253385;RO=7120;RPL=2094;RPP=4550.07;RPPR=15463.9;RPR=0;RUN=1;SAF=0;SAP=4550.07;SAR=2094;SRF=0;SRP=15463.9;SRR=7120;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:8,9:8:271:9:320:-24.0248,0,-19.6019	0/0:106:105,1:105:3768:1:36:0,-28.3109,-335.72	0/1:108:50,58:50:1765:58:2076:-154.599,0,-126.62	0/0:263:261,2:261:9293:2:72:0,-72.3342,-829.506	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.937	0/1:59:24,35:24:860:35:1256:-95.5845,0,-59.9611	0/1:190:109,81:109:3896:81:2878:-202.056,0,-293.639	0/0:136:136,0:136:4841:0:0:0,-40.9401,-435.845	0/1:70:32,38:32:1110:38:1368:-102.349,0,-79.1307	0/0:124:124,0:124:4436:0:0:0,-37.3277,-399.407	0/0:60:60,0:60:2121:0:0:0,-18.0618,-191.157	0/0:72:72,0:72:2558:0:0:0,-21.6742,-230.469	0/1:70:31,39:31:1116:39:1404:-105.587,0,-79.6796	0/0:59:59,0:59:2091:0:0:0,-17.7608,-188.46	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.803	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/0:70:70,0:70:2502:0:0:0,-21.0721,-225.431	0/0:52:52,0:52:1834:0:0:0,-15.6536,-165.339	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:154:72,82:72:2572:82:2948:-219.194,0,-185.371	0/1:143:57,86:57:2020:86:3092:-235.459,0,-139.026	0/1:81:34,47:34:1208:47:1684:-127.464,0,-84.6427	0/1:66:32,34:32:1148:34:1205:-88.8813,0,-83.7619	0/0:58:55,3:55:1953:3:108:0,-7.38457,-165.946	0/0:75:73,2:73:2581:2:72:0,-15.7405,-225.702	0/0:370:368,2:368:13126:2:57:0,-105.968,-1175.74	0/1:228:106,122:106:3788:122:4365:-324.258,0,-272.484	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.911	0/1:373:168,205:168:5976:205:7348:-549.083,0,-425.667	0/1:128:59,69:59:2101:69:2480:-184.921,0,-150.826	0/1:186:90,96:90:3219:96:3417:-251.75,0,-233.94	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:242:242,0:242:8570:0:0:0,-72.8493,-771.307	0/0:200:198,1:198:7028:1:36:0,-56.6665,-628.992	0/0:73:73,0:73:2578:0:0:0,-21.9752,-232.267	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:118:117,1:117:4196:1:36:0,-31.9233,-374.222	0/1:42:24,18:24:856:18:648:-46.0086,0,-64.7178	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:76:76,0:76:2697:0:0:0,-22.8783,-242.974	0/0:56:56,0:56:1966:0:0:0,-16.8577,-177.214	0/1:116:53,62:53:1885:62:2223:-165.395,0,-134.986	0/0:144:144,0:144:5128:0:0:0,-43.3483,-461.665	0/1:142:67,75:67:2369:75:2691:-199.688,0,-170.721	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/0:173:172,1:172:6121:1:36:0,-48.4799,-547.395	0/0:200:200,0:200:7128:0:0:0,-60.206,-641.583	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:112:112,0:112:4000:0:0:0,-33.7154,-360.188	0/1:48:24,24:24:852:24:864:-63.6331,0,-62.5509	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/1:137:71,66:71:2523:66:2368:-172.137,0,-186.081	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:18:9,9:9:320:9:320:-23.7238,0,-23.7238	0/1:82:44,38:44:1564:38:1349:-97.0238,0,-116.367	0/1:165:85,80:85:3023:80:2871:-208.957,0,-222.631	0/1:8:3,5:3:104:5:176:-13.7768,0,-7.29457	0/0:281:281,0:281:10044:0:0:0,-84.5894,-903.898	0/1:189:110,79:110:3894:79:2821:-197.233,0,-293.674	0/1:55:28,27:28:1000:27:942:-68.5332,0,-73.7587	0/1:82:49,33:49:1748:33:1173:-81.1911,0,-132.92	0/0:129:125,4:125:4464:4:144:0,-25.5193,-388.618	0/1:103:35,68:35:1241:68:2435:-188.399,0,-80.9864	0/1:24:9,15:9:320:15:536:-41.3501,0,-21.9176	0/0:71:70,1:70:2488:1:36:0,-17.7749,-220.576	0/1:98:54,44:54:1918:44:1554:-110.646,0,-143.395	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	0/0:156:156,0:156:5576:0:0:0,-46.9607,-501.961	0/0:185:185,0:185:6569:0:0:0,-55.6905,-591.294	0/1:110:65,45:65:2300:45:1597:-110.905,0,-174.149	0/0:96:95,1:95:3372:1:36:0,-25.3006,-300.1	0/1:22:10,12:10:352:12:432:-32.5985,0,-25.3955	0/0:134:133,1:133:4675:1:36:0,-36.7397,-417.317	0/1:85:49,35:49:1760:35:1260:-88.051,0,-133.038	0/0:192:192,0:192:6868:0:0:0,-57.7978,-618.19	0/1:145:81,64:81:2872:64:2276:-161.45,0,-215.07	0/1:43:19,24:19:676:24:856:-64.4168,0,-48.2237	0/0:63:63,0:63:2231:0:0:0,-18.9649,-201.054	0/1:173:90,83:90:3223:83:2973:-215.722,0,-238.213	0/1:36:16,20:16:568:20:716:-53.9306,0,-40.4239	0/0:97:97,0:97:3420:0:0:0,-29.1999,-308.016	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.59	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:111:61,50:61:2171:50:1781:-127.157,0,-162.242	0/1:63:21,42:21:743:42:1512:-117.41,0,-48.2284	0/0:106:106,0:106:3760:0:0:0,-31.9092,-338.603	0/0:98:98,0:98:3494:0:0:0,-29.5009,-314.671
chr05	3664670	.	CCA	TCT,CCT	104138	PASS	AB=0.50569,0.490669;ABP=3.62804,4.67177;AC=146,42;AF=0.776596,0.223404;AN=188;AO=3734,1092;CIGAR=1X1M1X,2M1X;DP=4842;DPB=4842;DPRA=0,1.16992;EPP=8102.6,2365.58;EPPR=5.18177;GTI=0;LEN=3,1;MEANALT=1.69149,2.19608;MQM=59.4786,59.8773;MQMR=60;NS=94;NUMALT=2;ODDS=0.592565;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=132188,38917;QR=28;RO=1;RPL=3718,1088;RPP=7972.91,2339.64;RPPR=5.18177;RPR=16,4;RUN=1,1;SAF=3717,1087;SAP=7964.3,2331.03;SAR=17,5;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:36:0,18,18:0:0:18,18:634,630:-103.205,-51.6061,-46.1875,-51.9496,0,-46.531	1/1:69:0,67,0:0:0:67,0:2370,0:-213.172,-20.169,0,-213.172,-20.169,-213.172	1/2:76:0,44,30:0:0:44,30:1544,1063:-212.291,-86.642,-73.3967,-125.693,0,-116.663	1/1:75:0,73,2:0:0:73,2:2578,68:-231.928,-21.9752,0,-226.441,-16.1494,-225.839	1/1:50:0,49,1:0:0:49,1:1743,36:-156.766,-14.7505,0,-153.829,-11.4532,-153.527	1/1:22:0,22,0:0:0:22,0:774,0:-69.9806,-6.62266,0,-69.9806,-6.62266,-69.9806	1/2:19:0,11,8:0:0:11,8:392,284:-55.4036,-23.4497,-20.1384,-32.3089,0,-29.9007	1/1:55:0,53,2:0:0:53,2:1866,72:-167.835,-15.9546,0,-161.96,-9.71993,-161.358	1/2:52:0,25,26:0:0:25,26:878,936:-147.937,-76.4786,-68.9529,-71.5576,0,-63.7308	1/1:37:0,37,0:0:0:37,0:1317,0:-118.818,-11.1381,0,-118.818,-11.1381,-118.818	1/1:65:0,65,0:0:0:65,0:2287,0:-206.069,-19.567,0,-206.069,-19.567,-206.069	1/1:121:0,121,0:0:0:121,0:4278,0:-384.968,-36.4246,0,-384.968,-36.4246,-384.968	1/2:67:0,35,32:0:0:35,32:1236,1152:-194.956,-94.3214,-83.7853,-100.991,0,-91.3584	1/1:88:0,87,1:0:0:87,1:3097,36:-278.355,-26.1896,0,-275.418,-22.8924,-275.117	1/1:71:0,70,1:0:0:70,1:2495,36:-224.434,-21.0721,0,-221.497,-17.7749,-221.196	1/1:93:0,93,0:0:0:93,0:3302,0:-297.263,-27.9958,0,-297.263,-27.9958,-297.263	1/1:39:0,39,0:0:0:39,0:1382,0:-124.669,-11.7402,0,-124.669,-11.7402,-124.669	1/1:29:0,29,0:0:0:29,0:1030,0:-92.9839,-8.72987,0,-92.9839,-8.72987,-92.9839	1/1:44:0,44,0:0:0:44,0:1551,0:-139.823,-13.2453,0,-139.823,-13.2453,-139.823	1/2:141:0,79,62:0:0:79,62:2814,2216:-410.39,-181.041,-157.259,-229.706,0,-211.042	1/2:96:0,52,44:0:0:52,44:1815,1544:-273.621,-126.002,-110.349,-147.969,0,-134.724	1/2:28:0,7,21:0:0:7,21:234,748:-80.2562,-61.3209,-59.2137,-19.2749,0,-12.9532	1/2:57:0,26,30:0:0:26,30:914,1076:-162.149,-87.7624,-79.9356,-74.3819,0,-65.351	1/1:52:0,48,3:0:0:48,3:1706,108:-153.285,-14.4494,0,-144.472,-5.63681,-143.569	1/1:33:0,33,0:0:0:33,0:1174,0:-105.959,-9.93399,0,-105.959,-9.93399,-105.959	1/1:99:0,97,2:0:0:97,2:3422,72:-307.753,-29.1999,0,-301.878,-22.9652,-301.276	1/2:119:0,51,68:0:0:51,68:1814,2426:-345.954,-198.126,-182.773,-148.184,0,-127.714	1/1:27:0,27,0:0:0:27,0:964,0:-87.0772,-8.12781,0,-87.0772,-8.12781,-87.0772	1/2:69:0,37,32:0:0:37,32:1324,1139:-201.096,-93.1293,-81.9912,-108.323,0,-98.6905	1/2:43:0,28,14:0:0:28,14:974,500:-119.948,-40.7622,-32.3334,-79.1808,0,-74.9664	1/2:42:0,23,19:0:0:23,19:820,672:-121.932,-55.0873,-48.1636,-67.1993,0,-61.4797	1/2:6:0,4,2:0:0:4,2:144,72:-17.9797,-6.23466,-5.03054,-12.1048,0,-11.5027	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:8:0,8,0:0:0:8,0:282,0:-25.7214,-2.40824,0,-25.7214,-2.40824,-25.7214	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:132:0,132,0:0:0:132,0:4726,0:-425.495,-39.736,0,-425.495,-39.736,-425.495	1/1:23:0,23,0:0:0:23,0:795,0:-71.8472,-6.92369,0,-71.8472,-6.92369,-71.8472	1/1:51:0,51,0:0:0:51,0:1795,0:-161.778,-15.3525,0,-161.778,-15.3525,-161.778	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:37:0,37,0:0:0:37,0:1302,0:-117.457,-11.1381,0,-117.457,-11.1381,-117.457	1/2:37:0,16,21:0:0:16,21:574,756:-108.8,-62.0456,-57.2291,-47.1136,0,-40.792	1/2:42:0,20,22:0:0:20,22:696,788:-121.21,-64.6221,-58.6015,-56.9406,0,-50.318	1/2:64:0,41,23:0:0:41,23:1458,828:-186.693,-67.9204,-55.5782,-119.131,0,-112.207	1/1:55:0,53,1:0:0:53,1:1886,36:-169.668,-15.9546,0,-166.958,-13.2567,-166.657	1/2:35:0,16,19:0:0:16,19:567,671:-101.179,-54.9944,-50.1779,-46.5387,0,-40.8191	1/1:45:0,45,0:0:0:45,0:1591,0:-143.203,-13.5464,0,-143.203,-13.5464,-143.203	1/2:38:0,10,27:0:0:10,27:342,949:-104.99,-77.2353,-74.225,-27.7408,0,-19.613	1/1:34:0,34,0:0:0:34,0:1191,0:-107.483,-10.235,0,-107.483,-10.235,-107.483	1/1:64:0,64,0:0:0:64,0:2273,0:-204.816,-19.2659,0,-204.816,-19.2659,-204.816	1/1:33:0,33,0:0:0:33,0:1164,0:-105.056,-9.93399,0,-105.056,-9.93399,-105.056	1/2:5:0,4,1:0:0:4,1:142,36:-14.8588,-3.29724,-2.09312,-11.9204,0,-11.6193	1/1:70:0,70,0:0:0:70,0:2479,0:-223.118,-21.0721,0,-223.118,-21.0721,-223.118	1/1:36:0,36,0:0:0:36,0:1275,0:-115.052,-10.8371,0,-115.052,-10.8371,-115.052	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/2:62:0,30,32:0:0:30,32:1069,1139:-180.284,-93.1861,-84.1552,-87.4535,0,-77.8205	1/1:26:0,26,0:0:0:26,0:913,0:-81.853,-7.82678,0,-81.853,-7.82678,-81.853	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.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chr05	3664696	.	T	A	16903.3	PASS	AB=0.492086;ABP=4.14446;AC=42;AF=0.225806;AN=186;AO=1030;CIGAR=1X;DP=4604;DPB=4604;DPRA=1.00416;EPP=2205.02;EPPR=7625.43;GTI=0;LEN=1;MEANALT=1.02273;MQM=59.9078;MQMR=59.598;NS=93;NUMALT=1;ODDS=2.43419;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36525;QR=125984;RO=3570;RPL=1030;RPP=2239.63;RPPR=7755.17;RPR=0;RUN=1;SAF=1026;SAP=2205.02;SAR=4;SRF=3555;SRP=7625.43;SRR=15;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:17,17:17:608:17:608:-44.817,0,-44.7924	0/0:66:66,0:66:2309:0:0:0,-19.868,-208.065	0/1:72:41,31:41:1451:31:1095:-77.1849,0,-109.21	0/0:68:68,0:68:2371:0:0:0,-20.47,-213.643	0/0:49:48,1:48:1703:1:36:0,-11.1522,-149.933	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.552	0/1:18:10,8:10:360:8:284:-20.4394,0,-27.3258	0/0:54:54,0:54:1880:0:0:0,-16.2556,-169.451	0/1:50:24,26:24:856:26:916:-67.705,0,-62.3096	0/0:35:35,0:35:1230:0:0:0,-10.536,-111	0/0:60:60,0:60:2131:0:0:0,-18.0618,-192.051	0/0:120:120,0:120:4223:0:0:0,-36.1236,-378.927	0/1:65:33,32:33:1172:32:1135:-82.8764,0,-86.1593	0/0:83:83,0:83:2956:0:0:0,-24.9855,-266.253	0/0:69:69,0:69:2435:0:0:0,-20.7711,-219.397	0/0:89:89,0:89:3154:0:0:0,-26.7917,-283.707	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.472	0/0:28:28,0:28:975:0:0:0,-8.42884,-88.0297	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.472	0/1:136:76,60:76:2653:60:2152:-153.007,0,-198.06	0/1:91:49,42:49:1739:42:1500:-107.899,0,-129.392	0/1:25:6,19:6:216:19:680:-54.0016,0,-12.2648	0/1:53:25,28:25:884:28:992:-73.6398,0,-63.9067	0/0:49:46,3:46:1621:3:108:0,-4.6753,-136.074	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.268	0/0:94:93,0:93:3302:0:0:0,-27.9958,-297.027	0/1:113:50,63:50:1750:63:2229:-166.857,0,-123.761	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/1:66:34,32:34:1169:32:1132:-82.2641,0,-85.641	0/1:42:28,14:28:1000:14:496:-32.3301,0,-77.6721	0/1:40:23,17:23:820:17:608:-43.0108,0,-62.0813	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1337	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:127:127,0:127:4460:0:0:0,-38.2308,-401.571	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5715	0/0:49:49,0:49:1690:0:0:0,-14.7505,-152.333	.:.:.:.:.:.:.:.	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.265	0/1:37:16,21:16:572:21:752:-56.8681,0,-40.5951	0/1:41:20,21:20:712:21:748:-55.3031,0,-52.0644	0/1:60:38,22:38:1340:22:780:-52.4612,0,-102.817	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.317	0/1:32:15,17:15:525:17:596:-44.3335,0,-37.944	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:40:11,29:11:396:29:1021:-80.1578,0,-23.9392	0/0:32:32,0:32:1119:0:0:0,-9.63296,-101.014	0/0:62:62,0:62:2186:0:0:0,-18.6639,-196.998	0/0:31:31,0:31:1090:0:0:0,-9.33193,-98.407	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49392	0/0:66:64,0:64:2261:0:0:0,-19.2659,-203.139	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:58:27,31:27:953:31:1092:-81.1298,0,-68.622	0/0:25:25,0:25:875:0:0:0,-7.52575,-77.785	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:40:21,19:21:735:19:664:-48.0433,0,-54.4256	0/1:77:45,32:45:1599:32:1136:-79.3692,0,-121.02	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:31:31,0:31:1092:0:0:0,-9.33193,-98.5896	0/1:61:36,25:36:1270:25:892:-62.2369,0,-96.1846	0/1:41:13,28:13:464:28:996:-77.6127,0,-29.7553	0/1:30:13,17:13:464:17:608:-46.0211,0,-33.0643	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.575	0/1:70:21,49:21:744:49:1748:-136.532,0,-46.2122	0/1:59:30,29:30:1035:29:1028:-75.0723,0,-75.6935	0/0:39:39,0:39:1362:0:0:0,-11.7402,-122.869	0/1:45:23,22:23:799:22:788:-57.6878,0,-58.6578	0/1:10:7,3:7:252:3:93:-5.66642,0,-20.0187	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.909	0/0:34:34,0:34:1199:0:0:0,-10.235,-108.206	0/0:109:109,0:109:3839:0:0:0,-32.8123,-345.66	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.979	0/1:42:28,14:28:995:14:496:-32.331,0,-77.2044	0/0:16:16,0:16:558:0:0:0,-4.81648,-50.5465	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.208	0/1:54:24,30:24:856:30:1056:-79.0594,0,-61.0973	0/0:69:69,0:69:2405:0:0:0,-20.7711,-216.685	0/1:44:30,14:30:1068:14:496:-31.7289,0,-83.1484	0/1:69:41,28:41:1456:28:992:-68.8233,0,-110.562	0/0:56:56,0:56:1953:0:0:0,-16.8577,-174.908	0/1:110:64,46:64:2267:46:1611:-112.164,0,-171.177	0/1:23:17,6:17:604:6:216:-12.8668,0,-47.7669	0/0:61:61,0:61:2151:0:0:0,-18.3628,-193.847	0/0:82:82,0:82:2870:0:0:0,-24.6845,-258.479	0/0:50:50,0:50:1770:0:0:0,-15.0515,-159.568	0/1:109:57,51:57:2027:51:1789:-128.416,0,-149.791	0/1:89:23,66:23:819:66:2344:-184.428,0,-47.2376	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.197	0/0:122:122,0:122:4288:0:0:0,-36.7257,-386.052
chr05	3692578	.	A	T	26407.9	PASS	AB=0.529269;ABP=33.7723;AC=38;AF=0.202128;AN=188;AO=2200;CIGAR=1X;DP=8850;DPB=8850;DPRA=1.22362;EPP=4780.25;EPPR=14430.3;GTI=2;LEN=1;MEANALT=1.02083;MQM=31.7486;MQMR=37.5153;NS=94;NUMALT=1;ODDS=1.06232;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78264;QR=237909;RO=6648;RPL=2200;RPP=4780.25;RPPR=14439;RPR=0;RUN=1;SAF=2200;SAP=4780.25;SAR=0;SRF=6647;SRP=14430.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:63:63,0:63:2260:0:0:0,-18.9649,-196.612	0/1:90:50,40:50:1792:40:1440:-81.8633,0,-126.497	0/0:205:205,0:205:7327:0:0:0,-61.7111,-628.27	0/0:256:256,0:256:9141:0:0:0,-77.0637,-756.645	0/0:29:29,0:29:1040:0:0:0,-8.72987,-88.31	0/0:41:40,1:40:1432:1:36:0,-10.3529,-122.309	0/1:102:32,70:32:1148:70:2508:-161.342,0,-65.7372	0/0:144:144,0:144:5176:0:0:0,-43.3483,-445.131	0/1:79:41,38:41:1476:38:1351:-79.0863,0,-101.94	0/0:90:90,0:90:3205:0:0:0,-27.0927,-267.508	0/0:63:63,0:63:2268:0:0:0,-18.9649,-189.111	0/0:91:91,0:91:3268:0:0:0,-27.3937,-283.746	0/1:91:43,48:43:1539:48:1679:-99.4565,0,-105.676	0/0:76:76,0:76:2697:0:0:0,-22.8783,-228.587	0/1:62:19,43:19:684:43:1518:-98.0155,0,-38.0094	0/0:79:78,1:78:2788:1:36:0,-20.7268,-229.762	0/0:35:35,0:35:1260:0:0:0,-10.536,-109.574	0/1:41:21,20:21:756:20:712:-42.305,0,-53.791	0/1:73:37,36:37:1320:36:1258:-74.7296,0,-91.9411	0/1:123:78,45:78:2804:45:1612:-86.7735,0,-193.631	0/1:167:73,94:73:2616:94:3367:-204.98,0,-171.928	0/1:113:36,77:36:1296:77:2746:-175.201,0,-69.8696	0/0:91:90,1:90:3220:1:36:0,-24.3392,-265.851	0/0:55:52,3:52:1860:3:108:0,-8.00394,-149.683	0/0:76:75,1:75:2688:1:36:0,-19.8237,-219.256	0/1:247:120,127:120:4299:127:4528:-269.617,0,-273.339	0/1:264:133,131:133:4760:131:4660:-276.785,0,-322.312	0/0:25:25,0:25:896:0:0:0,-7.52575,-76.3436	0/0:229:228,1:228:8168:1:36:0,-65.8813,-653.509	0/0:146:146,0:146:5240:0:0:0,-43.9504,-442.147	0/0:101:101,0:101:3632:0:0:0,-30.404,-303.173	0/0:22:22,0:22:784:0:0:0,-6.62266,-66.8446	0/0:12:12,0:12:419:0:0:0,-3.61236,-35.1705	0/1:7:1,6:1:36:6:216:-14.6927,0,-1.37349	0/0:11:11,0:11:392:0:0:0,-3.31133,-34.3827	0/0:32:31,1:31:1116:1:36:0,-6.57842,-94.3208	0/1:179:87,92:87:3124:92:3291:-197.519,0,-199.401	0/1:118:59,59:59:2112:59:2091:-123.048,0,-143.425	0/1:66:26,40:26:911:40:1411:-87.6468,0,-59.2901	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.43644	0/1:134:72,62:72:2580:62:2206:-128.362,0,-178.77	0/0:66:66,0:66:2368:0:0:0,-19.868,-200.448	0/0:124:124,0:124:4425:0:0:0,-37.3277,-374.93	0/0:46:46,0:46:1639:0:0:0,-13.8474,-137.054	0/0:57:57,0:57:2031:0:0:0,-17.1587,-169.106	0/0:113:113,0:113:4048:0:0:0,-34.0164,-326.214	0/0:111:110,1:110:3932:1:36:0,-30.3598,-335.615	0/1:145:58,87:58:2072:87:3091:-194.005,0,-126.479	0/1:103:47,56:47:1692:56:1999:-121.926,0,-110.353	0/1:137:65,70:65:2328:70:2486:-149.547,0,-153.126	0/0:118:118,0:118:4224:0:0:0,-35.5215,-337.192	0/0:18:18,0:18:644:0:0:0,-5.41854,-53.4211	0/0:163:163,0:163:5826:0:0:0,-49.0679,-501.383	0/0:94:94,0:94:3376:0:0:0,-28.2968,-274.268	0/0:24:24,0:24:864:0:0:0,-7.22472,-75.3578	0/0:186:186,0:186:6622:0:0:0,-55.9916,-559.422	0/0:48:48,0:48:1720:0:0:0,-14.4494,-141.712	0/0:23:23,0:23:824:0:0:0,-6.92369,-58.2932	0/1:23:10,13:10:360:13:464:-28.3606,0,-22.442	0/0:77:77,0:77:2760:0:0:0,-23.1793,-232.901	0/0:132:132,0:132:4723:0:0:0,-39.736,-393.675	0/0:10:10,0:10:360:0:0:0,-3.0103,-30.4499	0/0:145:145,0:145:5177:0:0:0,-43.6493,-419.529	0/0:125:125,0:125:4469:0:0:0,-37.6287,-367.865	0/1:64:27,37:27:963:37:1320:-81.6345,0,-62.7535	0/0:73:73,0:73:2582:0:0:0,-21.9752,-216.166	0/0:146:146,0:146:5231:0:0:0,-43.9504,-434.656	0/0:133:133,0:133:4757:0:0:0,-40.037,-394.543	0/0:61:61,0:61:2180:0:0:0,-18.3628,-185.541	0/0:52:51,1:51:1836:1:36:0,-12.599,-155.94	0/1:41:23,18:23:824:18:640:-37.0278,0,-54.6926	0/0:41:41,0:41:1468:0:0:0,-12.3422,-120.708	0/1:179:97,82:97:3467:82:2927:-169.683,0,-246.309	0/1:104:49,55:49:1760:55:1936:-116.323,0,-117.372	0/1:152:69,83:69:2453:83:2943:-178.755,0,-160.137	0/1:179:83,96:83:2965:96:3425:-206.503,0,-194.481	0/1:118:56,62:56:1989:62:2215:-132.319,0,-136.541	0/1:102:40,62:40:1423:62:2193:-136.832,0,-93.5873	0/0:25:25,0:25:892:0:0:0,-7.52575,-75.458	0/0:98:98,0:98:3520:0:0:0,-29.5009,-293.565	0/1:135:78,57:78:2793:57:2009:-113.192,0,-199.569	0/1:167:77,90:77:2760:90:3220:-195.263,0,-175.365	0/1:52:28,24:28:1008:24:860:-50.0777,0,-67.0207	0/1:67:29,38:29:1044:38:1364:-83.1918,0,-66.9501	0/1:39:18,21:18:631:21:752:-45.7301,0,-40.7848	0/1:107:54,53:54:1932:53:1891:-112.079,0,-128.624	0/1:24:10,14:10:360:14:491:-29.7523,0,-24.4496	0/0:63:62,1:62:2220:1:36:0,-15.9104,-188.07	0/0:78:78,0:78:2799:0:0:0,-23.4803,-242.283	0/0:77:77,0:77:2747:0:0:0,-23.1793,-231.998	0/1:181:84,97:84:3020:97:3429:-208.21,0,-197.715	0/1:59:14,45:14:500:45:1583:-104.668,0,-24.4945	0/0:132:132,0:132:4727:0:0:0,-39.736,-391.638	0/0:83:83,0:83:2972:0:0:0,-24.9855,-247.466
chr05	3694256	.	C	T	39695.1	PASS	AB=0.516122;ABP=13.1627;AC=44;AF=0.234043;AN=188;AO=2341;CIGAR=1X;DP=10052;DPB=10052;DPRA=1.01814;EPP=5086.43;EPPR=16690.8;GTI=0;LEN=1;MEANALT=1.07547;MQM=59.9551;MQMR=59.9916;NS=94;NUMALT=1;ODDS=6.21463;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83768;QR=275365;RO=7705;RPL=0;RPP=5086.43;RPPR=16690.8;RPR=2341;RUN=1;SAF=2341;SAP=5086.43;SAR=0;SRF=7705;SRP=16734.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:14,6:14:487:6:204:-12.6722,0,-38.1386	0/0:185:182,3:182:6494:3:108:0,-45.6154,-574.471	0/1:213:94,119:94:3368:119:4265:-319.899,0,-239.217	0/0:264:264,0:264:9442:0:0:0,-79.4719,-849.741	0/0:73:71,2:71:2536:2:72:0,-15.1385,-221.655	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:126:58,68:58:2080:68:2440:-181.925,0,-149.54	0/0:152:151,0:151:5390:0:0:0,-45.4555,-484.872	0/1:60:23,37:23:816:37:1328:-101.76,0,-55.6999	0/0:94:92,1:92:3288:1:36:0,-24.7573,-292.542	0/0:129:129,0:129:4624:0:0:0,-38.8329,-416.323	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/1:74:32,41:32:1152:41:1472:-110.587,0,-81.8004	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.827	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/0:105:105,0:105:3747:0:0:0,-31.6081,-337.431	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:205:104,101:104:3709:101:3612:-263.53,0,-272.3	0/1:121:62,59:62:2224:59:2100:-152.845,0,-164	0/1:139:50,89:50:1784:89:3196:-246.019,0,-119	0/1:64:27,37:27:972:37:1313:-99.2034,0,-68.532	0/0:86:79,7:79:2840:7:243:0,-3.6811,-233.63	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:317:317,0:317:11307:0:0:0,-95.4265,-1017.52	0/1:168:95,73:95:3385:73:2620:-185.345,0,-254.292	0/0:57:57,0:57:2043:0:0:0,-17.1587,-184.141	0/1:273:141,132:141:5060:132:4715:-342.329,0,-373.362	0/1:201:86,115:86:3067:115:4106:-308.788,0,-215.752	0/1:153:89,64:89:3167:64:2283:-159.674,0,-239.198	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26423	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:192:192,0:192:6866:0:0:0,-57.7978,-618.009	0/0:214:214,0:214:7652:0:0:0,-64.4204,-688.717	0/0:124:124,0:124:4439:0:0:0,-37.3277,-399.68	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:189:185,3:185:6557:3:108:0,-46.8783,-580.144	0/1:44:24,20:24:856:20:711:-51.0703,0,-64.1158	0/1:163:75,88:75:2676:88:3141:-233.847,0,-191.648	0/1:101:49,52:49:1743:52:1855:-136.825,0,-126.75	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:88:41,47:41:1468:47:1688:-125.716,0,-105.925	0/0:107:107,0:107:3810:0:0:0,-32.2102,-343.098	0/1:202:97,105:97:3468:105:3772:-278.87,0,-251.524	0/0:119:119,0:119:4284:0:0:0,-35.8226,-385.735	0/0:144:144,0:144:5139:0:0:0,-43.3483,-462.653	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:165:164,1:164:5876:1:36:0,-46.0717,-525.352	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.25	0/1:24:11,13:11:392:13:468:-35.2349,0,-28.3953	0/1:159:82,77:82:2913:77:2729:-197.986,0,-214.541	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:22:10,12:10:347:12:428:-32.2361,0,-24.941	0/1:83:41,42:41:1468:42:1512:-111.389,0,-107.431	0/1:145:74,71:74:2647:71:2548:-185.921,0,-194.827	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:237:237,0:237:8475:0:0:0,-71.3441,-762.752	0/1:223:96,127:96:3436:127:4555:-342.983,0,-242.287	0/1:91:44,47:44:1580:47:1692:-125.043,0,-115.098	0/1:104:56,48:56:2004:48:1701:-122.067,0,-149.326	0/0:176:176,0:176:6279:0:0:0,-52.9813,-565.206	0/1:173:66,105:66:2372:105:3764:-287.123,0,-161.902	0/1:56:29,27:29:1044:27:957:-69.5862,0,-77.4171	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:77:38,39:38:1355:39:1404:-103.48,0,-99.0704	0/1:21:13,8:13:464:8:284:-19.5817,0,-35.7755	0/0:125:125,0:125:4462:0:0:0,-37.6287,-401.75	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:173:173,0:173:6183:0:0:0,-52.0782,-556.568	0/0:172:171,1:171:6073:1:36:0,-48.1789,-543.079	0/1:147:83,64:83:2965:64:2281:-161.299,0,-222.83	0/0:156:155,1:155:5556:1:36:0,-43.3624,-496.565	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:124:124,0:124:4439:0:0:0,-37.3277,-399.68	0/1:117:52,65:52:1831:65:2332:-174.919,0,-129.85	0/0:218:218,0:218:7779:0:0:0,-65.6245,-700.141	0/1:107:50,57:50:1796:57:2030:-150.762,0,-129.712	0/1:68:33,35:33:1188:35:1256:-92.8752,0,-86.7586	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/1:143:83,60:83:2972:60:2160:-151.619,0,-224.665	0/1:45:28,17:28:1004:17:604:-41.1443,0,-77.1295	0/0:76:76,0:76:2711:0:0:0,-22.8783,-244.234	0/0:84:84,0:84:2995:0:0:0,-25.2865,-269.782	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:141:69,72:69:2459:72:2588:-190.719,0,-179.119	0/1:71:27,44:27:948:44:1575:-120.668,0,-64.2615	0/0:113:113,0:113:4039:0:0:0,-34.0164,-363.698	0/0:95:94,1:94:3372:1:36:0,-24.9996,-300.097
chr05	3721634	.	G	A	134400	PASS	AB=0.498143;ABP=3.11512;AC=144;AF=0.765957;AN=188;AO=6291;CIGAR=1X;DP=8066;DPB=8066;DPRA=0;EPP=13655.1;EPPR=3850.86;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9921;MQMR=59.9515;NS=94;NUMALT=1;ODDS=0.332784;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225041;QR=63085;RO=1772;RPL=0;RPP=13663.7;RPPR=3850.86;RPR=6291;RUN=1;SAF=6290;SAP=13655.1;SAR=1;SRF=1772;SRP=3850.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	1/1:145:0,145:0:0:145:5182:-466.517,-43.6494,0	0/1:87:46,41:46:1622:41:1476:-106.947,0,-120.075	1/1:190:1,189:1:36:189:6740:-603.077,-53.5974,0	1/1:59:2,57:2:72:57:2052:-178.115,-10.924,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	0/1:147:84,63:84:2981:63:2249:-158.42,0,-224.271	1/1:158:0,158:0:0:158:5633:-507.09,-47.5627,0	0/1:88:32,56:32:1133:56:2012:-154.862,0,-75.7411	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:85:0,85:0:0:85:3041:-273.91,-25.5876,0	0/1:42:17,25:17:612:25:900:-68.6778,0,-42.7702	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:41:0,41:0:0:41:1470:-132.596,-12.3422,0	1/1:51:0,51:0:0:51:1821:-164.169,-15.3525,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:197:96,101:96:3429:101:3609:-265.712,0,-249.519	0/1:140:66,74:66:2348:74:2645:-196.151,0,-169.435	0/1:73:34,39:34:1216:39:1385:-102.971,0,-87.7714	0/1:36:22,14:22:784:14:504:-34.861,0,-60.0468	0/1:53:10,43:10:356:43:1529:-121.947,0,-16.4267	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:299:1,298:1:36:298:10682:-957.684,-86.4097,0	0/1:195:79,116:79:2814:116:4160:-315.881,0,-194.794	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:216:113,103:113:3927:103:3685:-266.828,0,-288.598	0/1:147:67,80:67:2310:80:2845:-212.036,0,-163.901	0/1:143:100,43:100:3554:43:1548:-96.5658,0,-277.019	0/1:7:2,5:2:72:5:180:-13.9446,0,-4.72951	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:11:0,11:0:0:11:366:-33.2585,-3.31133,0	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	1/1:213:0,212:0:0:212:7628:-686.192,-63.8184,0	1/1:184:2,182:2:72:182:6486:-576.987,-48.5528,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:124:1,123:1:36:123:4398:-392.391,-33.7294,0	0/1:37:22,15:22:777:15:540:-37.7984,0,-59.1123	0/1:100:44,56:44:1584:56:2016:-151.61,0,-112.749	0/1:74:35,39:35:1260:39:1404:-104.383,0,-91.4293	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:53:21,32:21:748:32:1144:-87.3149,0,-51.6907	1/1:146:0,146:0:0:146:5187:-466.969,-43.9504,0	0/1:178:94,83:94:3357:83:2973:-214.159,0,-248.703	1/1:112:0,112:0:0:112:4009:-360.997,-33.7154,0	1/1:118:0,118:0:0:118:4228:-380.7,-35.5215,0	1/1:160:0,160:0:0:160:5721:-515.006,-48.1648,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:78:0,78:0:0:78:2781:-250.53,-23.4803,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:105:58,47:58:2084:47:1684:-120.239,0,-156.22	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:47:23,24:23:820:24:856:-63.2127,0,-59.9741	0/1:105:55,50:55:1976:50:1796:-130.314,0,-146.506	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:186:0,186:0:0:186:6624:-596.236,-55.9916,0	0/1:189:91,98:91:3253:98:3512:-259.395,0,-236.039	0/1:83:30,53:30:1080:53:1870:-143.59,0,-72.5278	0/1:79:42,37:42:1499:37:1328:-96.0409,0,-111.422	1/1:147:5,142:5:176:142:5059:-439.267,-28.0664,0	0/1:117:74,43:74:2652:43:1548:-104.393,0,-203.706	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0014	1/1:53:0,52:0:0:52:1860:-167.467,-15.6536,0	0/1:82:41,41:41:1464:41:1476:-108.452,0,-107.372	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	1/1:114:0,114:0:0:114:4088:-368.104,-34.3174,0	1/1:64:0,64:0:0:64:2266:-204.199,-19.2659,0	1/1:155:0,155:0:0:155:5484:-493.687,-46.6597,0	1/1:156:0,156:0:0:156:5574:-501.781,-46.9607,0	1/1:53:4,49:4:144:49:1760:-145.37,-2.64097,0	1/1:80:0,80:0:0:80:2880:-259.436,-24.0824,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:99:0,99:0:0:99:3560:-320.607,-29.802,0	0/1:92:49,43:49:1752:43:1540:-111.198,0,-130.265	1/1:254:0,254:0:0:254:9022:-811.957,-76.4616,0	0/1:115:57,58:57:2036:58:2080:-152.851,0,-148.858	0/1:41:24,17:24:860:17:612:-43.0712,0,-65.3796	1/1:86:0,86:0:0:86:3096:-278.866,-25.8886,0	0/1:150:71,79:71:2544:79:2844:-211.042,0,-184.02	0/1:37:15,22:15:536:22:792:-60.4676,0,-37.4367	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:85:44,41:44:1569:41:1468:-106.828,0,-115.912	0/1:63:51,12:51:1820:12:432:-20.2563,0,-145.116	1/1:98:0,98:0:0:98:3495:-314.759,-29.5009,0	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0
chr05	3728104	.	TAAATC	TAAATT,TAAAATT	581013	PASS	AB=0.688264,0.307344;ABP=2245.74,2351.61;AC=148,40;AF=0.787234,0.212766;AN=188;AO=19214,2260;CIGAR=5M1X,1M1I4M1X;DP=21571;DPB=21955.3;DPRA=0,0.983159;EPP=41656.2,4901.86;EPPR=26.8965;GTI=9;LEN=1,7;MEANALT=2.3617,2.93878;MQM=59.9701,59.969;MQMR=60;NS=94;NUMALT=2;ODDS=0.604192;PAIRED=0,0;PAIREDR=0;PAO=13.5,13;PQA=421,406;PQR=15;PRO=0.5;QA=682576,78331;QR=393;RO=11;RPL=10367,1;RPP=264.12,4901.86;RPPR=3.20771;RPR=8847,2259;RUN=1,1;SAF=10371,2;SAP=266.876,4893.18;SAR=8843,2258;SRF=5;SRP=3.20771;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:73:0,37,36:0:0:37,36:1309,1220:-205.886,-99.2606,-88.1224,-106.971,0,-96.1344	1/1:384:0,383,0:0:0:383,0:13649,0:-1227.25,-115.294,0,-1227.25,-115.294,-1227.25	1/2:252:0,185,67:0:0:185,67:6578,2350:-727.484,-191.531,-135.841,-536.245,0,-516.076	1/1:698:1,693,1:1:35:693,1:24600,36:-2209.89,-205.753,0,-2207.25,-205.661,-2209.8	1/1:170:0,170,0:0:0:170,0:6020,0:-541.908,-51.1751,0,-541.908,-51.1751,-541.908	1/1:147:0,147,0:0:0:147,0:5244,0:-472.093,-44.2514,0,-472.093,-44.2514,-472.093	1/2:181:0,160,20:0:0:160,20:5632,682:-513.818,-55.3177,-7.15288,-458.483,0,-452.463	1/1:492:1,490,0:1:36:490,0:17392,0:-1561.32,-144.557,0,-1561.62,-147.505,-1564.56	1/2:138:0,116,20:0:0:116,20:4126,682:-391.654,-55.3864,-20.4669,-336.32,0,-330.299	1/1:304:0,304,0:0:0:304,0:10774,0:-969.515,-91.5131,0,-969.515,-91.5131,-969.515	1/1:164:0,161,0:0:0:161,0:5737,0:-516.083,-48.4658,0,-516.083,-48.4658,-516.083	1/1:170:1,169,0:1:35:169,0:5952,0:-532.294,-47.6765,0,-532.595,-50.8741,-535.443	1/2:118:0,71,47:0:0:71,47:2531,1643:-337.834,-133.95,-112.577,-204.176,0,-190.028	1/1:159:0,159,0:0:0:159,0:5589,0:-503.136,-47.8638,0,-503.136,-47.8638,-503.136	1/1:153:0,153,0:0:0:153,0:5446,0:-490.268,-46.0576,0,-490.268,-46.0576,-490.268	1/1:127:0,127,0:0:0:127,0:4531,0:-407.899,-38.2308,0,-407.899,-38.2308,-407.899	1/1:135:0,135,0:0:0:135,0:4741,0:-426.851,-40.6391,0,-426.851,-40.6391,-426.851	1/1:130:0,130,0:0:0:130,0:4597,0:-413.896,-39.1339,0,-413.896,-39.1339,-413.896	1/1:87:0,87,0:0:0:87,0:3087,0:-278.057,-26.1896,0,-278.057,-26.1896,-278.057	1/2:459:1,335,122:1:35:335,122:11963,4274:-1319.33,-344.924,-246.926,-971.859,0,-937.981	1/2:308:0,245,60:0:0:245,60:8700,2087:-878.591,-169.692,-95.9399,-708.904,0,-690.842	1/2:160:0,82,75:0:0:82,75:2927,2632:-452.84,-214.214,-189.529,-238.643,0,-216.066	1/2:134:0,95,39:0:0:95,39:3372,1346:-384.447,-109.694,-81.0962,-275.101,0,-263.36	1/1:263:0,257,6:0:0:257,6:9160,212:-824.02,-77.3647,0,-806.755,-59.7461,-804.948	1/1:252:0,252,0:0:0:252,0:8926,0:-803.325,-75.8596,0,-803.325,-75.8596,-803.325	1/1:814:0,810,0:0:0:810,0:28835,0:-2594.03,-243.834,0,-2594.03,-243.834,-2594.03	1/2:436:0,302,133:0:0:302,133:10713,4580:-1244.8,-371.98,-281.069,-872.813,0,-832.776	1/1:113:0,112,0:0:0:112,0:3950,0:-355.334,-33.7154,0,-355.334,-33.7154,-355.334	1/2:605:0,430,173:0:0:430,173:15224,5933:-1721.76,-481.66,-352.217,-1240.09,0,-1188.01	1/2:258:0,187,70:0:0:187,70:6651,2446:-741.054,-199.032,-142.739,-542.082,0,-521.01	1/2:165:0,123,40:0:0:123,40:4339,1405:-467.726,-114.416,-77.3892,-353.373,0,-341.332	1/2:8:0,6,2:0:0:6,2:207,72:-23.0393,-6.23466,-4.42848,-17.1607,0,-16.5587	1/1:19:0,19,0:0:0:19,0:675,0:-61.077,-5.71957,0,-61.077,-5.71957,-61.077	1/2:5:0,3,2:0:0:3,2:104,68:-14.3128,-5.85565,-4.95256,-8.79971,0,-8.19765	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:14:0,14,0:0:0:14,0:483,0:-43.7973,-4.21442,0,-43.7973,-4.21442,-43.7973	1/1:529:0,527,0:0:0:527,0:18743,0:-1686.06,-158.643,0,-1686.06,-158.643,-1686.06	1/1:483:0,479,0:0:0:479,0:16997,0:-1529.08,-144.193,0,-1529.08,-144.193,-1529.08	1/1:168:0,168,0:0:0:168,0:6001,0:-540.196,-50.573,0,-540.196,-50.573,-540.196	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:594:0,584,5:0:0:584,5:20640,180:-1856.67,-175.802,0,-1841.98,-161.099,-1840.47	1/2:61:0,44,17:0:0:44,17:1580,590:-177.203,-48.3067,-35.0613,-129.246,0,-124.129	1/2:282:0,185,97:0:0:185,97:6603,3401:-815.268,-276.96,-221.269,-538.602,0,-509.402	1/2:163:0,117,45:0:0:117,45:4188,1550:-467.551,-126.018,-90.7972,-341.659,0,-328.113	1/1:172:0,172,0:0:0:172,0:6131,0:-551.891,-51.7772,0,-551.891,-51.7772,-551.891	1/2:186:0,144,41:0:0:144,41:5093,1395:-527.99,-113.176,-69.8282,-414.836,0,-402.494	1/1:405:0,402,0:0:0:402,0:14272,0:-1283.93,-121.014,0,-1283.93,-121.014,-1283.93	1/2:306:0,216,89:0:0:216,89:7675,3071:-874.937,-249.517,-184.494,-625.457,0,-598.666	1/1:275:0,274,0:0:0:274,0:9713,0:-873.766,-82.4822,0,-873.766,-82.4822,-873.766	1/1:436:0,435,0:0:0:435,0:15528,0:-1396.09,-130.948,0,-1396.09,-130.948,-1396.09	1/1:464:0,462,0:0:0:462,0:16456,0:-1480.45,-139.076,0,-1480.45,-139.076,-1480.45	1/2:11:0,6,5:0:0:6,5:216,163:-31.1292,-13.4862,-11.68,-17.9843,0,-16.4792	1/1:591:0,590,0:0:0:590,0:21018,0:-1890.68,-177.608,0,-1890.68,-177.608,-1890.68	1/1:71:0,71,0:0:0:71,0:2521,0:-227.14,-21.3731,0,-227.14,-21.3731,-227.14	1/1:10:0,10,0:0:0:10,0:347,0:-31.5636,-3.0103,0,-31.5636,-3.01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chr05	3728130	.	C	T	246047	PASS	AB=0.494874;ABP=4.07888;AC=144;AF=0.774194;AN=186;AO=8929;CIGAR=1X;DP=11320;DPB=11320;DPRA=61.5109;EPP=3.85686;EPPR=2426.89;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9467;MQMR=59.9586;NS=93;NUMALT=1;ODDS=1.2176;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=320008;QR=85530;RO=2389;RPL=4435;RPP=3.85686;RPPR=2432.83;RPR=4494;RUN=1;SAF=6;SAP=19340;SAR=8923;SRF=1;SRP=5181.98;SRR=2388;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:38,28:38:1356:28:1004:-70.8079,0,-102.473	1/1:184:0,184:0:0:184:6581:-592.37,-55.3895,0	0/1:162:72,90:72:2576:90:3219:-241.06,0,-183.323	1/1:326:1,325:1:36:325:11597:-1040,-94.5375,0	1/1:69:0,69:0:0:69:2470:-222.554,-20.7711,0	1/1:46:0,46:0:0:46:1640:-147.888,-13.8474,0	0/1:64:20,44:20:720:44:1580:-123.226,0,-45.8629	1/1:263:0,263:0:0:263:9428:-848.46,-79.1709,0	0/1:75:26,49:26:936:49:1764:-136.467,0,-61.9761	1/1:139:0,139:0:0:139:4968:-446.569,-41.8432,0	1/1:111:0,111:0:0:111:3996:-359.823,-33.4143,0	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	0/1:83:49,34:49:1752:34:1205:-82.9114,0,-132.979	1/1:99:0,99:0:0:99:3558:-320.391,-29.802,0	1/1:71:1,70:1:36:70:2512:-222.734,-17.7749,0	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	1/1:75:0,75:0:0:75:2696:-242.87,-22.5773,0	1/1:78:0,78:0:0:78:2808:-252.959,-23.4803,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:256:129,127:129:4616:127:4549:-332.511,0,-338.532	0/1:209:72,137:72:2588:137:4916:-379.674,0,-170.245	0/1:120:79,41:79:2836:41:1460:-95.5724,0,-219.354	0/1:77:38,39:38:1352:39:1394:-102.58,0,-98.8011	1/1:192:6,186:6:212:186:6665:-580.5,-38.373,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:291:0,291:0:0:291:10456:-940.949,-87.5997,0	0/1:268:136,131:136:4873:131:4685:-341.075,0,-357.984	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:363:185,178:185:6644:178:6366:-463.751,0,-488.762	0/1:153:73,80:73:2620:80:2863:-211.846,0,-189.99	0/1:95:45,50:45:1608:50:1788:-132.605,0,-116.384	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:251:0,251:0:0:251:9003:-810.245,-75.5585,0	1/1:184:0,184:0:0:184:6608:-594.797,-55.3895,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:169:7,162:7:252:162:5808:-499.803,-27.8451,0	0/1:39:18,21:18:648:21:748:-55.9051,0,-46.9117	0/1:181:104,77:104:3732:77:2772:-195.234,0,-281.166	0/1:104:46,57:46:1656:57:2048:-153.138,0,-117.961	1/1:87:0,87:0:0:87:3116:-280.666,-26.1896,0	0/1:109:40,69:40:1428:69:2460:-188.843,0,-96.0053	1/1:195:0,195:0:0:195:6996:-629.685,-58.7009,0	0/1:192:91,101:91:3268:101:3632:-269.286,0,-236.542	1/1:99:0,99:0:0:99:3532:-318.088,-29.802,0	1/1:209:0,209:0:0:209:7486:-673.511,-62.9153,0	1/1:259:0,259:0:0:259:9308:-837.681,-77.9668,0	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	1/1:211:0,211:0:0:211:7526:-677.381,-63.5173,0	1/1:19:0,19:0:0:19:680:-61.5288,-5.71957,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:169:73,96:73:2620:96:3435:-258.482,0,-185.173	1/1:67:0,67:0:0:67:2398:-216.065,-20.169,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:73:35,38:35:1248:38:1354:-100.177,0,-90.6497	0/1:165:94,71:94:3372:71:2552:-180.26,0,-254.022	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:236:0,236:0:0:236:8440:-759.597,-71.0431,0	0/1:175:105,70:105:3733:70:2512:-173.623,0,-283.489	0/1:102:53,49:53:1900:49:1764:-128.339,0,-140.573	0/1:143:78,65:78:2796:65:2328:-166.733,0,-208.833	1/1:199:2,197:2:72:197:7049:-627.633,-53.0682,0	0/1:115:85,30:85:3056:30:1074:-62.354,0,-240.65	0/1:40:17,23:17:612:23:828:-62.8029,0,-43.3722	1/1:127:0,127:0:0:127:4564:-410.924,-38.2308,0	0/1:119:61,58:61:2177:58:2067:-150.478,0,-160.372	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:61:0,61:0:0:61:2162:-194.828,-18.3628,0	1/1:117:0,117:0:0:117:4189:-377.174,-35.2205,0	1/1:190:1,189:1:36:189:6768:-605.582,-53.5974,0	1/1:223:2,221:2:72:221:7936:-707.424,-60.293,0	0/1:166:65,101:65:2327:101:3628:-276.753,0,-159.718	1/1:183:1,182:1:36:182:6520:-583.285,-51.4902,0	.:.:.:.:.:.:.:.	1/1:179:1,178:1:36:178:6379:-570.35,-50.2861,0	0/1:119:74,45:74:2625:45:1616:-109.907,0,-200.673	1/1:362:2,360:2:57:360:12897:-1154.7,-103.56,0	0/1:135:62,73:62:2213:73:2628:-196.127,0,-158.794	0/1:76:42,34:42:1512:34:1224:-87.5888,0,-113.496	1/1:117:0,117:0:0:117:4189:-377.19,-35.2205,0	0/1:176:96,80:96:3421:80:2872:-205.735,0,-255.121	0/1:63:29,34:29:1040:34:1224:-91.4572,0,-74.9495	1/1:88:0,88:0:0:88:3168:-285.343,-26.4906,0	1/1:83:0,83:0:0:83:2984:-268.783,-24.9855,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:105:56,49:56:2016:49:1764:-127.427,0,-150.105	0/1:92:62,30:62:2200:30:1065:-68.465,0,-170.568	1/1:127:0,127:0:0:127:4555:-410.112,-38.2308,0	1/1:127:0,127:0:0:127:4564:-410.924,-38.2308,0
chr05	3742110	.	C	T	74925.3	PASS	AB=0.52532;ABP=13.017;AC=143;AF=0.768817;AN=186;AO=3564;CIGAR=1X;DP=4425;DPB=4425;DPRA=0;EPP=7742.14;EPPR=1872.65;GTI=0;LEN=1;MEANALT=1;MQM=59.9313;MQMR=60;NS=93;NUMALT=1;ODDS=0.258529;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125763;QR=30703;RO=861;RPL=3564;RPP=7742.14;RPPR=1872.65;RPR=0;RUN=1;SAF=0;SAP=7742.14;SAR=3564;SRF=0;SRP=1872.65;SRR=861;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	1/1:73:0,73:0:0:73:2578:-232.25,-21.9752,0	0/1:30:17,13:17:612:13:464:-33.0666,0,-46.3825	1/1:195:0,195:0:0:195:6795:-611.63,-58.7009,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	.:.:.:.:.:.:.:.	0/1:45:28,17:28:1000:17:589:-39.7869,0,-76.769	1/1:26:1,25:1:36:25:892:-76.972,-4.22851,0	0/1:36:15,21:15:540:21:748:-56.7906,0,-38.0995	1/1:52:0,52:0:0:52:1852:-166.96,-15.6536,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:59:0,59:0:0:59:2112:-190.331,-17.7608,0	0/1:39:18,21:18:633:21:752:-56.2661,0,-45.5549	1/1:22:1,21:1:36:21:744:-63.6856,-3.02439,0	1/1:46:0,46:0:0:46:1629:-146.897,-13.8474,0	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	1/1:21:0,21:0:0:21:754:-68.1868,-6.32163,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:93:47,46:47:1688:46:1636:-119.533,0,-124.211	0/1:78:37,41:37:1328:41:1464:-108.576,0,-96.3419	0/1:40:29,11:29:1036:11:380:-22.4908,0,-81.5127	0/1:45:25,20:25:900:20:704:-50.1376,0,-67.7747	1/1:36:2,34:2:72:34:1196:-101.109,-4.00036,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:219:0,219:0:0:219:7743:-696.841,-65.9256,0	0/1:82:37,45:37:1320:45:1580:-117.806,0,-94.4175	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:197:71,126:71:2518:126:4438:-340.292,0,-167.566	0/1:85:39,46:39:1366:46:1621:-120.589,0,-97.6469	0/1:70:27,43:27:968:43:1516:-115.661,0,-66.3653	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:8:0,8:0:0:8:278:-25.357,-2.40824,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:116:0,116:0:0:116:4108:-369.873,-34.9195,0	1/1:37:0,37:0:0:37:1312:-118.382,-11.1381,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:79:3,76:3:108:76:2716:-234.609,-13.7062,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:34:15,19:15:540:19:672:-50.5718,0,-38.7015	0/1:20:13,7:13:464:7:248:-16.6436,0,-36.0769	1/1:21:0,21:0:0:21:733:-66.2897,-6.32163,0	0/1:17:9,8:9:324:8:273:-19.7827,0,-24.3883	1/1:19:0,19:0:0:19:657:-59.4504,-5.71957,0	0/1:57:23,34:23:828:34:1201:-91.2303,0,-57.6854	1/1:63:0,63:0:0:63:2224:-200.319,-18.9649,0	1/1:114:0,114:0:0:114:3997:-359.923,-34.3174,0	1/1:97:0,97:0:0:97:3356:-302.235,-29.1999,0	0/1:16:9,7:9:324:7:244:-17.4829,0,-24.6894	1/1:38:0,38:0:0:38:1317:-118.827,-11.4391,0	1/1:44:0,44:0:0:44:1527:-137.717,-13.2453,0	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:79:42,37:42:1493:37:1297:-93.2477,0,-110.881	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:11:10,1:10:345:1:36:-0.286945,0,-28.0695	0/1:20:4,16:4:144:16:554:-44.1449,0,-7.29302	0/1:28:11,17:11:396:17:608:-46.6232,0,-27.5539	0/1:64:34,30:34:1220:30:1038:-74.4592,0,-90.8409	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:252:0,252:0:0:252:8802:-792.188,-75.8596,0	0/1:92:37,55:37:1309:55:1957:-148.709,0,-90.4148	0/1:36:6,30:6:212:30:1064:-85.2346,0,-8.58772	0/1:22:10,12:10:356:12:424:-31.8738,0,-25.7586	1/1:66:0,66:0:0:66:2309:-208.071,-19.868,0	0/1:70:34,36:34:1216:36:1284:-94.7913,0,-88.6745	0/1:11:4,7:4:140:7:248:-19.3529,0,-9.63325	1/1:31:0,31:0:0:31:1080:-97.5048,-9.33193,0	0/1:15:5,10:5:180:10:352:-27.5027,0,-12.0366	0/1:25:15,10:15:502:10:360:-25.2186,0,-37.9704	1/1:71:0,71:0:0:71:2497:-224.955,-21.3731,0	1/1:53:0,53:0:0:53:1888:-170.198,-15.9546,0	1/1:70:0,70:0:0:70:2446:-220.394,-21.0721,0	1/1:192:0,192:0:0:192:6770:-609.375,-57.7978,0	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	1/1:75:1,74:1:36:74:2612:-231.724,-18.979,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:48:0,48:0:0:48:1709:-154.094,-14.4494,0	0/1:64:27,37:27:972:37:1313:-99.2038,0,-68.532	1/1:56:0,56:0:0:56:1977:-178.203,-16.8577,0	0/1:43:25,18:25:896:18:648:-45.7076,0,-68.0161	0/1:26:14,12:14:504:12:428:-31.032,0,-37.8713	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:76:37,39:37:1309:39:1392:-102.701,0,-95.2313	0/1:12:9,3:9:320:3:108:-6.45935,0,-25.53	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:32:17,15:17:612:15:536:-38.9419,0,-45.7805	0/1:25:14,11:14:500:11:384:-27.3689,0,-37.8104	1/1:55:0,55:0:0:55:1952:-175.826,-16.5567,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0
chr05	3774898	.	G	A	100889	PASS	AB=0.371962;ABP=2663.2;AC=92;AF=0.489362;AN=188;AO=6949;CIGAR=1X;DP=18703;DPB=18703;DPRA=19.3395;EPP=15092.6;EPPR=25496.1;GTI=12;LEN=1;MEANALT=1.09783;MQM=59.9118;MQMR=32.7377;NS=94;NUMALT=1;ODDS=0.595044;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246879;QR=419023;RO=11744;RPL=0;RPP=15092.6;RPPR=25504.8;RPR=6949;RUN=1;SAF=6949;SAP=15092.6;SAR=0;SRF=11743;SRP=25496.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:31,14:31:1116:14:500:-31.7898,0,-43.1965	0/1:295:109,186:109:3897:186:6614:-506.53,0,-251.398	0/1:237:79,158:79:2802:158:5588:-431.699,0,-172.57	0/1:552:294,258:294:10412:258:9133:-655.778,0,-732.836	0/1:195:151,44:151:5412:44:1569:-82.6087,0,-304.409	0/1:102:85,17:85:3021:17:604:-23.9855,0,-173.497	0/1:300:104,196:104:3724:196:6981:-538.048,0,-231.696	0/1:345:263,82:263:9393:82:2924:-159.54,0,-532.994	0/1:116:74,42:74:2637:42:1493:-99.7431,0,-113.381	0/1:249:192,57:192:6861:57:2026:-107.526,0,-379.908	0/1:125:96,29:96:3448:29:1036:-55.9252,0,-220.328	0/1:164:100,64:100:3592:64:2288:-156.813,0,-262.894	0/1:75:50,25:50:1777:25:896:-58.3831,0,-104.068	0/1:154:124,30:124:4428:30:1057:-49.0803,0,-287.887	0/1:118:92,26:92:3289:26:920:-47.595,0,-184.482	0/1:110:88,21:88:3156:21:748:-34.4734,0,-179.637	0/1:142:109,33:109:3885:33:1188:-64.368,0,-230.524	0/1:135:102,33:102:3645:33:1184:-66.2293,0,-208.332	0/1:97:74,23:74:2633:23:828:-45.6442,0,-166.691	0/1:510:339,171:339:12093:171:6054:-391.435,0,-544.051	0/1:163:110,53:110:3921:53:1896:-121.85,0,-179.937	0/1:197:141,55:141:4969:55:1936:-114.773,0,-169.634	0/1:57:9,48:9:324:48:1720:-137.927,0,-11.1681	0/1:235:165,70:165:5868:70:2500:-154.511,0,-283.007	0/1:139:56,83:56:2008:83:2927:-221.819,0,-132.766	0/1:770:569,201:569:20348:201:7104:-407.633,0,-1182.45	0/1:341:234,107:234:8290:107:3820:-241.343,0,-394.992	0/1:82:70,12:70:2497:12:428:-14.1743,0,-151.9	0/1:541:387,154:387:13831:154:5442:-327.056,0,-644.155	0/1:298:196,102:196:6971:102:3634:-237.559,0,-323.061	0/1:159:101,58:101:3601:58:2060:-137.611,0,-182.817	0/1:5:1,4:1:36:4:144:-11.8085,0,-1.97555	0/1:36:27,9:27:972:9:312:-17.5783,0,-55.4671	0/1:7:5,2:5:180:2:72:-4.72951,0,-13.955	0/0:16:16,0:16:572:0:0:0,-4.81648,-42.3011	0/1:20:17,3:17:608:3:108:-4.05457,0,-41.1414	0/1:451:351,100:351:12517:100:3580:-186.643,0,-741.343	0/1:518:398,120:398:14196:120:4272:-228.255,0,-827.462	0/1:125:99,26:99:3560:26:936:-46.9307,0,-220.949	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.9739	0/1:409:184,225:184:6589:225:8015:-598.124,0,-440.269	0/1:39:30,9:30:1076:9:324:-17.7657,0,-47.17	0/1:258:163,95:163:5743:95:3374:-226.204,0,-250.034	0/1:83:58,25:58:2084:25:877:-54.2597,0,-112.55	0/1:110:91,19:91:3244:19:672:-27.6912,0,-201.033	0/1:124:37,87:37:1309:87:3089:-240.91,0,-74.063	0/1:318:238,80:238:8447:80:2834:-159.563,0,-489.729	0/1:350:114,235:114:4039:235:8409:-648.972,0,-242.542	0/1:271:204,66:204:7301:66:2348:-127.728,0,-406.939	0/1:300:229,71:229:8140:71:2524:-137.103,0,-487.004	0/1:377:186,191:186:6657:191:6716:-491.04,0,-461.228	0/1:15:11,4:11:392:4:140:-8.42913,0,-15.2018	0/1:440:218,222:218:7809:222:7886:-577.31,0,-548.32	0/1:59:26,33:26:928:33:1184:-89.1075,0,-60.8051	0/1:40:28,12:28:1004:12:424:-26.4552,0,-38.2602	0/1:265:187,78:187:6655:78:2788:-171.386,0,-336.595	0/1:69:51,18:51:1828:18:640:-37.1582,0,-107.26	0/1:13:8,5:8:288:5:180:-12.6387,0,-19.2457	0/1:31:21,10:21:748:10:360:-23.4124,0,-29.4867	0/1:88:64,24:64:2281:24:852:-50.5097,0,-109.721	0/1:192:134,58:134:4789:58:2064:-128.231,0,-246.309	0/1:16:2,14:2:72:14:492:-39.7959,0,-1.74705	0/1:549:389,159:389:13861:159:5637:-342.152,0,-767.289	0/1:336:234,102:234:8354:102:3629:-225.669,0,-372.885	0/1:158:118,40:118:4240:40:1428:-81.2548,0,-233.05	0/1:156:59,97:59:2116:97:3429:-261.864,0,-136.187	0/1:308:239,69:239:8564:69:2448:-127.854,0,-488.344	0/1:264:182,80:182:6506:80:2849:-177.661,0,-249.808	0/1:44:20,24:20:720:24:860:-64.4765,0,-49.7917	0/1:178:89,89:89:3181:89:3118:-227.26,0,-223.769	0/1:171:117,54:117:4155:54:1931:-122.59,0,-223.715	0/1:43:35,8:35:1237:8:280:-12.595,0,-57.8274	0/1:319:153,165:153:5435:165:5857:-431.158,0,-378.487	0/1:160:126,33:126:4482:33:1165:-57.1774,0,-253.409	0/1:223:103,119:103:3659:119:4175:-308.708,0,-251.685	0/1:465:200,265:200:7131:265:9386:-704.734,0,-476.342	0/1:268:173,95:173:6170:95:3401:-225.623,0,-279.216	0/1:268:167,101:167:5970:101:3612:-242.98,0,-436.763	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.3536	0/1:298:166,132:166:5932:132:4645:-328.513,0,-426.626	0/1:215:155,60:155:5537:60:2148:-128.866,0,-277.525	0/1:588:291,297:291:10420:297:10499:-767.832,0,-723.686	0/1:152:103,49:103:3666:49:1752:-112.208,0,-177.856	0/1:85:29,56:29:1040:56:2004:-155.045,0,-64.4512	0/1:151:115,36:115:4105:36:1292:-71.1282,0,-228.266	0/1:184:74,110:74:2633:110:3940:-299.402,0,-172.605	0/1:88:62,26:62:2228:26:932:-57.7082,0,-108.739	0/1:112:83,29:83:2972:29:1036:-59.8386,0,-174.843	0/1:143:75,68:75:2700:68:2402:-173.387,0,-190.523	0/1:83:53,30:53:1881:30:1068:-71.2563,0,-136.635	0/1:140:101,39:101:3575:39:1392:-83.4348,0,-189.912	0/1:81:65,16:65:2328:16:572:-27.43,0,-92.8048	0/1:178:73,105:73:2624:105:3738:-283.035,0,-172.025	0/1:189:94,95:94:3364:95:3400:-249.318,0,-234.077
chr05	3774903	.	T	G	124333	PASS	AB=0.443119;ABP=525.976;AC=96;AF=0.510638;AN=188;AO=8262;CIGAR=1X;DP=18630;DPB=18630;DPRA=0;EPP=17943.7;EPPR=22473.4;GTI=2;LEN=1;MEANALT=1.14894;MQM=40.9292;MQMR=44.2804;NS=94;NUMALT=1;ODDS=96.5507;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=295519;QR=370535;RO=10352;RPL=0;RPP=17943.7;RPPR=22482.1;RPR=8262;RUN=1;SAF=8262;SAP=17943.7;SAR=0;SRF=10351;SRP=22473.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:34,13:34:1205:13:468:-27.2943,0,-53.2917	0/1:291:183,108:183:6538:108:3865:-249.566,0,-500.893	0/1:235:157,78:157:5599:78:2808:-173.395,0,-433.292	0/1:556:258,298:258:9185:298:10642:-753.48,0,-657.085	0/1:196:96,100:96:3436:100:3588:-253.568,0,-137.63	0/1:101:47,54:47:1676:54:1917:-137.126,0,-56.5777	0/1:295:190,105:190:6796:105:3776:-237.481,0,-522.909	0/1:344:176,168:176:6301:168:6036:-422.671,0,-271.635	0/1:112:85,27:85:3024:27:959:-50.1232,0,-155.16	0/1:246:130,116:130:4645:116:4117:-282.41,0,-193.852	0/1:126:50,76:50:1792:76:2732:-198.25,0,-78.5316	0/1:163:63,99:63:2260:99:3547:-259.002,0,-154.536	0/1:74:40,34:40:1436:34:1224:-84.4256,0,-74.8622	0/1:155:56,99:56:2008:99:3560:-263.427,0,-80.0421	0/1:121:58,63:58:2080:63:2245:-157.015,0,-82.1536	0/1:110:53,57:53:1887:57:2029:-143.945,0,-72.5202	0/1:141:65,76:65:2323:76:2723:-194.789,0,-99.8765	0/1:136:66,70:66:2376:70:2507:-177.997,0,-99.8659	0/1:95:39,56:39:1404:56:1996:-145.996,0,-61.3278	0/1:511:351,160:351:12604:160:5703:-339.275,0,-602.382	0/1:163:111,52:111:3988:52:1872:-114.125,0,-194.091	0/1:192:155,35:155:5540:35:1252:-50.9509,0,-228.08	0/1:53:44,9:44:1553:9:324:-12.3722,0,-124.105	0/1:231:148,83:148:5308:83:2971:-188.766,0,-241.876	0/1:137:82,55:82:2932:55:1957:-129.044,0,-222.874	0/1:768:381,387:381:13626:387:13850:-964.34,0,-622.652	0/1:340:221,119:221:7924:119:4247:-268.004,0,-368.864	0/1:81:31,50:31:1116:50:1768:-130.155,0,-32.8354	0/1:541:350,190:350:12510:190:6812:-426.474,0,-553.372	0/1:296:198,98:198:7089:98:3501:-215.651,0,-345.567	0/1:160:102,57:102:3643:57:2040:-128.55,0,-189.63	0/1:6:4,2:4:144:2:72:-4.80714,0,-11.5074	0/1:33:16,17:16:572:17:604:-43.0368,0,-24.4802	0/1:7:2,5:2:72:5:180:-13.955,0,-4.72951	1/1:16:4,12:4:140:12:432:-33.6146,-0.384713,0	0/1:20:6,14:6:216:14:504:-38.2041,0,-7.17021	0/1:454:204,250:204:7328:250:8943:-636.622,0,-301.466	0/1:514:247,267:247:8852:267:9533:-672.666,0,-377.116	0/1:125:52,72:52:1868:72:2592:-188.526,0,-78.6911	1/1:5:1,4:1:36:4:135:-10.9517,-0.306767,0	0/1:411:233,178:233:8292:178:6373:-430.992,0,-612.941	0/1:39:26,13:26:936:13:468:-29.3543,0,-35.854	0/1:258:185,73:185:6613:73:2620:-150.578,0,-327.375	0/1:84:47,37:47:1679:37:1332:-89.968,0,-79.5481	0/1:111:42,69:42:1504:69:2426:-178.175,0,-51.1583	0/1:121:85,36:85:3041:36:1292:-73.3718,0,-237.493	0/1:316:157,158:157:5601:158:5630:-396.359,0,-253.425	0/1:347:233,114:233:8326:114:4077:-248.701,0,-640.333	0/1:270:141,129:141:5049:129:4605:-317.278,0,-216.709	0/1:299:136,162:136:4854:162:5773:-409.242,0,-210.665	0/1:377:189,188:189:6780:188:6725:-467.199,0,-496.782	0/1:15:10,4:10:360:4:140:-8.12531,0,-15.316	0/1:439:221,218:221:7932:218:7831:-550.458,0,-581.746	0/1:59:34,25:34:1220:25:896:-60.0229,0,-90.1791	0/1:41:31,10:31:1112:10:356:-19.1869,0,-48.49	0/1:258:156,102:156:5584:102:3622:-238.225,0,-256.975	0/1:72:34,38:34:1212:38:1368:-97.1451,0,-55.2077	0/1:13:6,7:6:216:7:252:-18.1953,0,-13.6772	0/1:28:21,7:21:756:7:248:-13.3854,0,-36.0537	0/1:87:54,33:54:1940:33:1179:-76.7849,0,-84.4811	0/1:193:117,76:117:4193:76:2715:-175.197,0,-200.421	0/1:16:14,2:14:504:2:68:-1.44462,0,-40.8816	0/1:545:289,255:289:10350:255:9130:-624.051,0,-489.406	0/1:337:233,102:233:8347:102:3660:-215.033,0,-378.95	0/1:153:83,70:83:2953:70:2512:-172.8,0,-127.301	0/1:152:93,58:93:3282:58:2080:-134.331,0,-249.784	0/1:308:146,162:146:5233:162:5774:-402.124,0,-215.994	0/1:258:192,66:192:6877:66:2368:-125.171,0,-298.183	0/1:45:25,20:25:896:20:720:-49.4907,0,-67.414	0/1:180:91,89:91:3260:89:3180:-223.19,0,-239.431	0/1:170:98,72:98:3506:72:2565:-171.211,0,-173.475	0/1:43:27,16:27:972:16:576:-37.2393,0,-35.8154	0/1:312:162,150:162:5793:150:5357:-373.778,0,-427.554	0/1:158:74,83:74:2651:83:2976:-211.693,0,-99.4864	0/1:225:116,109:116:4148:109:3870:-268.35,0,-305.693	0/1:468:268,200:268:9586:200:7176:-479.105,0,-721.81	0/1:270:189,81:189:6741:81:2897:-171.379,0,-333.314	0/1:269:101,168:101:3628:168:6040:-444.787,0,-241.422	0/1:7:3,4:3:108:4:144:-10.6546,0,-7.96796	0/1:297:132,164:132:4732:164:5856:-420.259,0,-336.585	0/1:215:131,84:131:4712:84:3012:-198.247,0,-213.491	0/1:590:294,295:294:10533:295:10569:-735.863,0,-770.213	0/1:146:91,55:91:3276:55:1975:-126.838,0,-155.597	0/1:82:53,29:53:1908:29:1040:-65.3543,0,-147.313	0/1:149:76,73:76:2728:73:2616:-181.624,0,-113.562	0/1:184:108,76:108:3875:76:2712:-179.55,0,-293.554	0/1:87:56,31:56:2012:31:1108:-70.8855,0,-92.5812	0/1:113:56,57:56:2003:57:2043:-144.376,0,-90.8842	0/1:145:68,77:68:2440:77:2756:-195.042,0,-176.206	0/1:82:29,53:29:1040:53:1896:-138.142,0,-69.2299	0/1:140:80,60:80:2865:60:2128:-143.62,0,-131.404	0/1:84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chr05	3774915	.	A	G	111369	PASS	AB=0.55466;ABP=489.175;AC=92;AF=0.489362;AN=188;AO=10396;CIGAR=1X;DP=18755;DPB=18755;DPRA=0;EPP=22369.7;EPPR=17780.4;GTI=2;LEN=1;MEANALT=1.08511;MQM=44.2491;MQMR=40.9745;NS=94;NUMALT=1;ODDS=97.7353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=371266;QR=299521;RO=8350;RPL=25;RPP=22361;RPPR=17780.4;RPR=10371;RUN=1;SAF=10395;SAP=22569;SAR=1;SRF=8350;SRP=18134.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:13,34:13:464:34:1220:-52.975,0,-26.9321	0/1:293:107,186:107:3825:186:6663:-511.543,0,-245.588	0/1:231:79,152:79:2840:152:5430:-419.293,0,-177.399	0/1:552:298,253:298:10678:253:9041:-645.319,0,-757.589	0/1:192:99,93:99:3548:93:3320:-132.452,0,-251.419	0/1:100:54,46:54:1932:46:1635:-52.8285,0,-138.736	0/1:299:106,193:106:3804:193:6864:-527.823,0,-238.8	0/1:349:171,178:171:6152:178:6334:-272.951,0,-431.314	0/1:116:28,88:28:1008:88:3134:-158.506,0,-53.0587	0/1:255:124,131:124:4429:131:4643:-191.094,0,-306.351	0/1:123:73,50:73:2628:50:1792:-79.7924,0,-190.143	0/1:164:100,64:100:3596:64:2300:-157.892,0,-262.945	0/1:76:35,41:35:1260:41:1468:-77.4986,0,-86.9562	0/1:157:101,56:101:3601:56:1996:-79.0759,0,-266.396	0/1:121:61,60:61:2188:60:2137:-87.9891,0,-152.187	0/1:110:57,53:57:2048:53:1882:-70.9533,0,-145.493	0/1:142:77,65:77:2756:65:2332:-97.8805,0,-197.198	0/1:134:68,66:68:2444:66:2364:-100.104,0,-172.991	0/1:97:57,40:57:2052:40:1428:-63.6032,0,-150.18	0/1:511:164,346:164:5880:346:12357:-586.946,0,-354.63	0/1:164:52,112:52:1872:112:3991:-193.417,0,-113.824	0/1:200:37,163:37:1328:163:5796:-239.556,0,-54.7749	0/1:57:9,48:9:320:48:1707:-136.756,0,-10.8781	0/1:236:85,151:85:3056:151:5373:-245.934,0,-194.501	0/1:141:58,83:58:2080:83:2959:-224.098,0,-138.364	0/1:773:392,380:392:14035:380:13581:-617.351,0,-979.331	0/1:346:121,225:121:4348:225:8048:-379.1,0,-274.894	0/1:80:49,31:49:1760:31:1104:-32.7701,0,-129.652	0/1:536:189,347:189:6792:347:12421:-539.564,0,-426.252	0/1:291:96,195:96:3437:195:6979:-339.318,0,-211.498	0/1:160:57,103:57:2044:103:3682:-192.419,0,-128.869	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.49159	0/1:36:18,18:18:644:18:640:-27.8922,0,-45.5353	0/1:7:5,2:5:180:2:72:-4.72951,0,-13.955	0/0:16:12,4:12:428:4:144:0,-0.382462,-33.3106	0/1:20:14,6:14:504:6:216:-7.17021,0,-38.2041	0/1:457:254,203:254:9128:203:7255:-293.285,0,-651.141	0/1:517:267,249:267:9577:249:8874:-378.884,0,-675.058	0/1:125:71,54:71:2556:54:1919:-82.2555,0,-185.196	0/0:5:4,1:4:144:1:36:0,-0.306767,-11.7429	0/1:408:178,230:178:6384:230:8221:-608.427,0,-432.796	0/1:40:14,26:14:500:26:921:-35.5195,0,-31.4365	0/1:259:73,185:73:2624:185:6616:-331.688,0,-150.475	0/1:85:38,47:38:1368:47:1688:-79.257,0,-92.776	0/1:115:72,43:72:2568:43:1535:-53.188,0,-188.955	0/1:124:36,88:36:1288:88:3152:-244.324,0,-74.308	0/1:322:160,162:160:5740:162:5780:-266.644,0,-403.68	0/1:352:116,236:116:4168:236:8391:-644.805,0,-254.683	0/1:273:134,139:134:4804:139:4988:-212.673,0,-333.009	0/1:301:166,135:166:5949:135:4840:-211.026,0,-424.399	0/1:378:186,191:186:6657:191:6808:-498.944,0,-461.524	0/1:15:4,11:4:144:11:396:-16.014,0,-8.26617	0/1:441:218,223:218:7836:223:7969:-584.47,0,-549.94	0/1:60:26,34:26:928:34:1211:-89.0668,0,-62.4695	0/1:41:10,31:10:356:31:1112:-48.49,0,-19.1869	0/1:261:104,157:104:3720:157:5582:-251.992,0,-245.451	0/1:72:40,32:40:1428:32:1140:-49.0821,0,-102.442	0/1:13:7,6:7:252:6:216:-13.6772,0,-18.1953	0/1:29:7,22:7:252:22:784:-36.3729,0,-13.5103	0/1:89:35,54:35:1256:54:1936:-81.7822,0,-82.9976	0/1:192:78,114:78:2792:114:4062:-192.442,0,-182.087	0/1:16:2,14:2:72:14:500:-40.5197,0,-1.74705	0/1:556:262,292:262:9382:292:10449:-489.845,0,-642.568	0/1:334:102,231:102:3664:231:8201:-378.668,0,-217.018	0/1:159:74,85:74:2660:85:3045:-129.959,0,-183.665	0/1:153:60,93:60:2152:93:3282:-249.542,0,-139.867	0/1:314:164,150:164:5892:150:5362:-220.201,0,-414.322	0/1:264:65,199:65:2336:199:7107:-306.8,0,-120.543	0/1:46:21,25:21:756:25:888:-66.3916,0,-52.4287	0/1:181:92,89:92:3296:89:3190:-232.837,0,-233.024	0/1:172:74,98:74:2660:98:3503:-171.156,0,-178.757	0/1:41:14,27:14:500:27:964:-36.0547,0,-31.2345	0/1:317:154,163:154:5517:163:5828:-429.199,0,-386.089	0/1:162:84,78:84:3016:78:2787:-107.936,0,-213.94	0/1:227:111,116:111:3980:116:4147:-305.057,0,-276.343	0/1:463:199,264:199:7156:264:9407:-707.218,0,-478.643	0/1:271:82,189:82:2928:189:6780:-334.498,0,-173.84	0/1:270:167,103:167:6000:103:3687:-246.426,0,-440.96	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.0181	0/1:299:167,132:167:5995:132:4728:-335.671,0,-431.616	0/1:223:88,135:88:3156:135:4792:-215.895,0,-208.328	0/1:591:296,295:296:10632:295:10550:-771.503,0,-740.973	0/1:151:56,95:56:2012:95:3408:-162.273,0,-128.426	0/1:83:30,53:30:1072:53:1900:-146.292,0,-67.8748	0/1:150:74,76:74:2660:76:2736:-115.338,0,-184.957	0/1:182:75,107:75:2684:107:3824:-289.57,0,-177.819	0/1:87:31,56:31:1108:56:2014:-92.9403,0,-70.9761	0/1:112:57,55:57:2040:55:1972:-88.0376,0,-144.36	0/1:145:77,68:77:2768:68:2419:-172.063,0,-197.982	0/1:82:53,29:53:1904:29:1032:-66.6095,0,-140.805	0/1:138:59,79:59:2120:79:2817:-128.407,0,-143.353	0/1:82: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chr05	3774947	.	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chr05	3775368	.	G	C	19791	PASS	AB=0.524401;ABP=14.6673;AC=42;AF=0.225806;AN=186;AO=1191;CIGAR=1X;DP=4905;DPB=4905;DPRA=1.2988;EPP=2589.23;EPPR=8063.52;GTI=0;LEN=1;MEANALT=1;MQM=55.0151;MQMR=59.7699;NS=93;NUMALT=1;ODDS=1.97425;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42376;QR=130860;RO=3712;RPL=0;RPP=2589.23;RPPR=8063.52;RPR=1191;RUN=1;SAF=0;SAP=2589.23;SAR=1191;SRF=0;SRP=8063.52;SRR=3712;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:17,25:17:603:25:879:-66.4583,0,-41.9562	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/1:64:38,26:38:1343:26:923:-64.0387,0,-101.903	0/0:86:86,0:86:3009:0:0:0,-25.8886,-271.042	0/0:67:66,1:66:2343:1:36:0,-16.5758,-207.536	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	0/1:52:26,26:26:893:26:919:-67.047,0,-65.0217	0/0:60:60,0:60:2104:0:0:0,-18.0618,-189.625	0/1:50:37,13:37:1310:13:468:-27.1748,0,-103.149	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.465	0/0:39:39,0:39:1334:0:0:0,-11.7402,-120.353	0/0:84:84,0:84:2881:0:0:0,-25.2865,-259.526	0/1:89:48,41:48:1711:41:1459:-104.374,0,-124.922	0/0:41:41,0:41:1433:0:0:0,-12.3422,-129.035	0/0:54:54,0:54:1893:0:0:0,-16.2556,-170.646	0/0:47:47,0:47:1657:0:0:0,-14.1484,-149.415	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/0:31:31,0:31:1096:0:0:0,-9.33193,-98.9467	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.1655	0/1:82:35,47:35:1219:47:1684:-126.922,0,-85.3231	0/1:84:42,42:42:1487:42:1500:-109.654,0,-108.708	0/1:62:16,46:16:576:46:1652:-130.161,0,-32.6505	0/1:58:35,23:35:1219:23:820:-56.5275,0,-92.5501	0/0:23:22,1:22:775:1:36:0,-3.33052,-66.1595	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/0:167:166,1:166:5894:1:36:0,-46.6747,-526.969	0/1:154:68,86:68:2402:86:3079:-230.097,0,-169.441	0/0:34:34,0:34:1198:0:0:0,-10.235,-108.124	0/1:154:45,109:45:1608:109:3871:-302.11,0,-98.6506	0/1:47:32,15:32:1136:15:536:-34.3621,0,-88.4005	0/1:33:16,17:16:568:17:608:-45.0795,0,-41.5179	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9198	0/1:6:4,2:4:144:2:72:-5.00849,0,-11.5074	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:161:161,0:161:5680:0:0:0,-48.4658,-511.323	0/0:46:46,0:46:1611:0:0:0,-13.8474,-145.278	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:54:53,1:53:1872:1:36:0,-12.8011,-165.305	0/1:15:11,4:11:387:4:144:-8.77929,0,-30.6505	0/1:90:49,41:49:1734:41:1459:-104.205,0,-129.25	0/1:42:24,18:24:845:18:640:-45.1585,0,-63.1607	0/0:51:51,0:51:1779:0:0:0,-15.3525,-160.389	0/1:76:25,51:25:892:51:1804:-139.606,0,-57.7214	0/0:76:75,1:75:2674:1:36:0,-19.2837,-237.309	0/1:105:49,56:49:1721:56:1980:-146.193,0,-123.565	0/0:52:52,0:52:1825:0:0:0,-15.6536,-164.526	0/0:55:54,0:54:1889:0:0:0,-16.2556,-169.963	0/0:38:37,0:37:1328:0:0:0,-11.1381,-119.462	0/1:4:1,3:1:36:3:104:-8.49287,0,-2.39415	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.508	0/1:8:5,3:5:180:3:108:-7.65655,0,-14.1438	0/1:77:37,40:37:1319:40:1408:-103.488,0,-95.8273	0/0:37:37,0:37:1306:0:0:0,-11.1381,-117.84	0/1:7:6,1:6:216:1:36:-1.49006,0,-17.6833	0/1:8:7,1:7:248:1:36:-1.18903,0,-20.256	0/1:43:20,23:20:697:23:828:-61.7937,0,-50.1064	0/1:74:40,34:40:1385:34:1215:-87.304,0,-102.434	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:97:97,0:97:3424:0:0:0,-29.1999,-308.375	0/1:98:63,35:63:2213:35:1247:-82.8706,0,-169.927	0/1:17:11,6:11:369:6:212:-14.282,0,-28.415	0/1:33:14,19:14:486:19:672:-50.8324,0,-34.134	0/0:127:125,2:125:4376:2:63:0,-32.2507,-388.037	0/1:92:26,66:26:919:66:2352:-183.235,0,-55.3314	0/1:25:14,11:14:491:11:396:-28.406,0,-36.9954	0/0:25:25,0:25:882:0:0:0,-7.52575,-79.6965	0/1:34:18,16:18:627:16:576:-41.87,0,-42.7631	0/1:9:3,6:3:108:6:212:-16.7027,0,-7.3659	0/0:51:51,0:51:1791:0:0:0,-15.3525,-161.469	0/0:74:74,0:74:2656:0:0:0,-22.2762,-238.729	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.58	0/0:92:92,0:92:3259:0:0:0,-27.6948,-293.529	0/1:39:29,10:29:1027:10:360:-20.9704,0,-81.002	0/0:40:40,0:40:1406:0:0:0,-12.0412,-126.819	0/1:8:1,7:1:36:7:252:-20.4929,0,-1.19003	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:38:15,23:15:536:23:824:-62.6601,0,-37.1357	0/0:91:90,1:90:3197:1:36:0,-23.798,-284.358	0/1:38:19,19:19:676:19:658:-48.0612,0,-48.3313	0/1:64:33,31:33:1167:31:1103:-80.155,0,-86.0705	0/0:29:29,0:29:1008:0:0:0,-8.72987,-91.0281	0/1:98:41,57:41:1419:57:2023:-152.543,0,-98.4987	0/1:13:5,8:5:167:8:288:-22.327,0,-11.445	0/0:57:57,0:57:2024:0:0:0,-17.1587,-182.43	0/0:37:37,0:37:1281:0:0:0,-11.1381,-115.586	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:66:28,38:28:1004:38:1347:-101.427,0,-70.8079	0/1:56:19,37:19:672:37:1311:-100.963,0,-43.9492	0/0:65:65,0:65:2276:0:0:0,-19.5669,-205.049	0/0:92:91,1:91:3169:1:32:0,-24.4965,-281.776
chr05	3775377	.	CAGCT	CAGCC,GAGCC	102801	PASS	AB=0.454228,0.537925;ABP=44.7548,31.6692;AC=144,42;AF=0.774194,0.225806;AN=186;AO=3612,1244;CIGAR=4M1X,1X3M1X;DP=4892;DPB=4892;DPRA=0,1.33007;EPP=7837.69,2704.32;EPPR=7.35324;GTI=0;LEN=1,5;MEANALT=1.87097,2.34;MQM=59.7835,54.8859;MQMR=60;NS=93;NUMALT=2;ODDS=0.0537955;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=128425,43181;QR=72;RO=2;RPL=1,0;RPP=7837.69,2704.32;RPPR=7.35324;RPR=3611,1244;RUN=1,1;SAF=0,0;SAP=7846.37,2704.32;SAR=3612,1244;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,17,27:0:0:17,27:594,910:-122.168,-73.8429,-68.7254,-48.6693,0,-40.5415	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/2:67:0,38,29:0:0:38,29:1360,982:-190.798,-79.8829,-68.4437,-111.261,0,-102.532	1/1:85:0,85,0:0:0:85,0:3047,0:-274.459,-25.5876,0,-274.459,-25.5876,-274.459	1/1:66:0,65,1:0:0:65,1:2284,36:-205.461,-19.567,0,-202.529,-16.2748,-202.227	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	1/2:51:0,24,24:0:0:24,24:864,818:-136.673,-66.1668,-58.942,-70.498,0,-63.2733	1/1:61:0,61,0:0:0:61,0:2165,0:-195.113,-18.3628,0,-195.113,-18.3628,-195.113	1/2:50:0,35,14:0:0:35,14:1244,488:-140.851,-39.4719,-28.9358,-101.379,0,-97.1642	1/1:39:0,39,0:0:0:39,0:1385,0:-124.947,-11.7402,0,-124.947,-11.7402,-124.947	1/1:39:0,38,0:0:0:38,0:1334,0:-119.999,-11.4391,0,-119.999,-11.4391,-119.999	1/1:81:0,81,0:0:0:81,0:2821,0:-254.129,-24.3834,0,-254.129,-24.3834,-254.129	1/2:91:0,49,41:0:0:49,41:1740,1429:-255.069,-115.444,-100.694,-139.617,0,-127.275	1/1:41:0,41,0:0:0:41,0:1445,0:-129.916,-12.3422,0,-129.916,-12.3422,-129.916	1/1:55:0,55,0:0:0:55,0:1928,0:-173.794,-16.5567,0,-173.794,-16.5567,-173.794	1/1:45:0,45,0:0:0:45,0:1604,0:-144.65,-13.5464,0,-144.65,-13.5464,-144.65	1/1:21:0,21,0:0:0:21,0:743,0:-67.1933,-6.32163,0,-67.1933,-6.32163,-67.1933	1/1:28:0,28,0:0:0:28,0:990,0:-89.4124,-8.42884,0,-89.4124,-8.42884,-89.4124	1/1:27:0,27,0:0:0:27,0:951,0:-85.4754,-8.12781,0,-85.4754,-8.12781,-85.4754	1/2:82:0,33,47:0:0:33,47:1175,1647:-229.539,-133.769,-123.835,-95.7636,0,-81.6152	1/2:81:0,35,45:0:0:35,45:1247,1495:-222.293,-120.64,-110.104,-101.639,0,-88.0924	1/2:66:0,16,50:0:0:16,50:568,1729:-186.114,-140.687,-135.87,-45.7747,0,-30.7232	1/2:59:0,35,24:0:0:35,24:1238,839:-169.321,-68.4841,-57.9481,-101.187,0,-93.9627	1/1:19:0,18,1:0:0:18,1:646,36:-58.1121,-5.41854,0,-55.1792,-2.1264,-54.8782	1/1:71:0,70,0:0:0:70,0:2495,0:-224.443,-21.0721,0,-224.443,-21.0721,-224.443	1/1:160:0,159,1:0:0:159,1:5641,36:-507.448,-47.8638,0,-504.511,-44.5675,-504.21	1/2:158:0,68,90:0:0:68,90:2414,3147:-451.573,-255.514,-235.044,-196.411,0,-169.318	1/1:30:0,30,0:0:0:30,0:1067,0:-96.3412,-9.0309,0,-96.3412,-9.0309,-96.3412	1/2:157:0,45,111:0:0:45,111:1612,3892:-448.082,-316.627,-303.081,-131.51,0,-98.0957	1/2:46:0,31,15:0:0:31,15:1116,524:-133.983,-42.9157,-33.5838,-91.4198,0,-86.9043	1/2:33:0,16,17:0:0:16,17:567,593:-94.7382,-48.5454,-43.7289,-46.5442,0,-41.4267	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:7:0,4,3:0:0:4,3:144,103:-20.4434,-8.68375,-7.47963,-12.1095,0,-11.2064	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	.:.:.:.:.:.:.:.	1/1:159:0,158,0:0:0:158,0:5595,0:-503.374,-47.5627,0,-503.374,-47.5627,-503.374	1/1:46:0,46,0:0:0:46,0:1623,0:-146.358,-13.8474,0,-146.358,-13.8474,-146.358	1/1:45:0,45,0:0:0:45,0:1592,0:-143.569,-13.5464,0,-143.569,-13.5464,-143.569	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:52:0,51,1:0:0:51,1:1802,36:-162.115,-15.3525,0,-159.307,-12.1991,-159.006	1/2:16:0,9,6:0:0:9,6:320,204:-42.5964,-16.5114,-13.8021,-26.0737,0,-24.2675	1/2:95:0,50,44:0:0:50,44:1771,1506:-266.244,-121.97,-106.919,-144.31,0,-131.065	1/2:43:0,24,19:0:0:24,19:860,674:-124.601,-55.1418,-47.9171,-69.8132,0,-64.0936	1/1:51:0,51,0:0:0:51,0:1799,0:-162.191,-15.3525,0,-162.191,-15.3525,-162.191	1/2:80:0,27,53:0:0:27,53:964,1868:-230.824,-152.23,-144.102,-78.949,0,-62.9944	1/1:75:0,73,1:0:0:73,1:2616,35:-235.33,-21.9752,0,-232.485,-19.1352,-232.184	1/2:104:0,47,57:0:0:47,57:1672,1969:-295.971,-159.703,-145.554,-136.619,0,-119.46	1/1:54:0,54,0:0:0:54,0:1917,0:-172.805,-16.2556,0,-172.805,-16.2556,-172.805	1/1:54:0,54,0:0:0:54,0:1921,0:-173.166,-16.2556,0,-173.166,-16.2556,-173.166	1/1:38:0,38,0:0:0:38,0:1360,0:-122.701,-11.4391,0,-122.701,-11.4391,-122.701	1/2:4:0,1,3:0:0:1,3:36,106:-11.9188,-8.97963,-8.6786,-3.29724,0,-2.39415	1/1:44:0,43,0:0:0:43,0:1532,0:-137.813,-12.9443,0,-137.813,-12.9443,-137.813	1/1:38:0,37,0:0:0:37,0:1332,0:-119.939,-11.1381,0,-119.939,-11.1381,-119.939	1/2:9:0,6,3:0:0:6,3:212,108:-26.423,-9.1617,-7.35552,-17.6186,0,-16.7155	1/2:76:0,35,40:0:0:35,40:1251,1417:-217.075,-115.071,-104.535,-102.057,0,-90.0156	1/1:35:0,35,0:0:0:35,0:1245,0:-112.353,-10.5361,0,-112.353,-10.5361,-112.353	1/2:7:0,6,1:0:0:6,1:216,36:-20.9208,-3.29624,-1.49006,-17.9843,0,-17.6833	1/2:8:0,7,1:0:0:7,1:252,36:-23.8582,-3.29624,-1.18903,-20.9217,0,-20.6207	1/2:44:0,19,25:0:0:19,25:680,870:-126.426,-70.9699,-65.2503,-55.8096,0,-48.2838	1/2:74:0,38,36:0:0:38,36:1340,1238:-209.7,-100.815,-89.3757,-109.232,0,-98.3953	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/1:99:0,98,0:0:0:98,0:3494,0:-314.429,-29.5009,0,-314.429,-29.5009,-314.429	1/2:98:0,61,34:0:0:61,34:2184,1169:-272.924,-94.8105,-76.4477,-178.146,0,-167.911	1/2:17:0,11,6:0:0:11,6:387,205:-48.4673,-16.9575,-13.6462,-31.8546,0,-30.0484	1/2:33:0,14,19:0:0:14,19:496,674:-95.6327,-55.2271,-51.0127,-40.7598,0,-35.0403	1/1:127:0,125,2:0:0:125,2:4448,71:-400.136,-37.6288,0,-394.357,-31.4951,-393.755	1/2:93:0,25,67:0:0:25,67:896,2334:-261.353,-188.273,-180.747,-73.1625,0,-52.9935	1/2:28:0,13,14:0:0:13,14:468,497:-78.6975,-40.5062,-36.5928,-38.2606,0,-34.0462	1/1:25:1,24,0:1:36:24,0:864,0:-74.4834,-3.92748,0,-74.7844,-7.22472,-77.7218	1/2:36:0,18,18:0:0:18,18:644,633:-100.51,-51.808,-46.3895,-49.0449,0,-43.6263	1/2:9:0,3,6:0:0:3,6:108,206:-25.8771,-17.0593,-16.1562,-9.17208,0,-7.3659	1/1:50:0,48,0:0:0:48,0:1720,0:-154.783,-14.4494,0,-154.783,-14.4494,-154.783	1/1:72:0,72,0:0:0:72,0:2592,0:-232.971,-21.6742,0,-232.971,-21.6742,-232.971	1/1:63:0,63,0:0:0:63,0:2260,0:-203.663,-18.9649,0,-203.663,-18.9649,-203.663	1/1:89:0,86,0:0:0:86,0:3080,0:-277.078,-25.8886,0,-277.078,-25.8886,-277.078	1/2:37:0,27,10:0:0:27,10:960,352:-107.213,-28.9772,-20.8494,-78.5885,0,-75.5782	1/1:38:0,36,0:0:0:36,0:1284,0:-115.513,-10.8371,0,-115.513,-10.8371,-115.513	1/2:8:0,1,7:0:0:1,7:36,246:-23.1878,-20.2491,-19.948,-3.29724,0,-1.19003	1/1:33:0,33,0:0:0:33,0:1178,0:-106.328,-9.93399,0,-106.328,-9.93399,-106.328	1/2:41:0,16,25:0:0:16,25:572,837:-114.465,-67.8162,-62.9997,-46.9969,0,-39.4712	1/1:89:0,87,1:0:0:87,1:3091,36:-278.057,-26.1896,0,-275.121,-23.2547,-274.82	1/2:39:0,19,20:0:0:19,20:676,693:-110.334,-56.6299,-50.9103,-54.0509,0,-48.0303	1/2:67:0,32,35:0:0:32,35:1133,1199:-189.792,-97.4964,-87.8634,-92.6437,0,-82.1076	1/1:30:0,30,0:0:0:30,0:1050,0:-94.8088,-9.0309,0,-94.8088,-9.0309,-94.8088	1/2:97:1,38,58:1:36:38,58:1335,2023:-269.652,-161.296,-152.795,-105.71,0,-91.1879	1/2:11:0,3,8:0:0:3,8:104,286:-32.102,-23.6516,-22.7485,-8.79971,0,-6.39147	1/1:54:0,54,0:0:0:54,0:1920,0:-173.077,-16.2556,0,-173.077,-16.2556,-173.077	1/1:35:0,35,0:0:0:35,0:1240,0:-111.904,-10.5361,0,-111.904,-10.5361,-111.904	1/1:15:0,14,0:0:0:14,0:500,0:-45.0791,-4.21442,0,-45.0791,-4.21442,-45.0791	1/2:69:0,28,41:0:0:28,41:1008,1429:-198.579,-116.326,-107.897,-82.6075,0,-70.2653	1/2:59:0,18,41:0:0:18,41:640,1420:-167.455,-115.296,-109.878,-52.5108,0,-40.1685	1/1:62:0,62,0:0:0:62,0:2193,0:-197.63,-18.6639,0,-197.63,-18.6639,-197.63	1/1:89:0,86,2:0:0:86,2:3063,64:-275.111,-25.8886,0,-269.957,-20.7607,-269.355
chr05	3899969	.	T	C	146785	PASS	AB=0.438834;ABP=156.817;AC=140;AF=0.744681;AN=188;AO=6952;CIGAR=1X;DP=9657;DPB=9657;DPRA=16.723;EPP=14925.9;EPPR=5822.61;GTI=2;LEN=1;MEANALT=1.0989;MQM=59.9957;MQMR=60;NS=94;NUMALT=1;ODDS=0.76054;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=248730;QR=95927;RO=2696;RPL=6932;RPP=14925.9;RPPR=5822.61;RPR=20;RUN=1;SAF=0;SAP=15099.1;SAR=6952;SRF=0;SRP=5857.3;SRR=2696;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:47,30:47:1688:30:1064:-72.8924,0,-129.028	1/1:123:1,122:1:36:122:4372:-390.054,-33.4284,0	0/1:169:113,56:113:4041:56:1989:-128.408,0,-313.002	1/1:132:1,131:1:36:131:4692:-418.842,-36.1377,0	1/1:99:0,99:0:0:99:3535:-318.357,-29.802,0	1/1:99:0,99:0:0:99:3556:-320.247,-29.802,0	0/1:124:86,38:86:3035:38:1364:-85.733,0,-236.05	1/1:126:0,126:0:0:126:4520:-406.967,-37.9298,0	0/1:114:74,39:74:2645:39:1385:-90.5708,0,-203.919	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:62:25,37:25:896:37:1321:-100.527,0,-62.2965	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	1/1:67:0,67:0:0:67:2399:-216.166,-20.169,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:364:151,213:151:5340:213:7641:-578.143,0,-371.159	0/1:120:87,33:87:3064:33:1188:-71.105,0,-239.861	0/1:284:125,159:125:4307:159:5685:-426.275,0,-302.311	0/1:153:93,60:93:3306:60:2145:-147.259,0,-251.699	1/1:88:7,81:7:252:81:2896:-237.847,-3.46168,0	1/1:199:0,199:0:0:199:7146:-643.193,-59.905,0	1/1:240:0,240:0:0:240:8620:-775.791,-72.2472,0	0/1:250:139,110:139:4996:110:3905:-276.325,0,-374.469	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:282:158,124:158:5638:124:4430:-313.978,0,-422.649	0/1:197:129,68:129:4624:68:2448:-161.271,0,-357.02	0/1:112:74,38:74:2611:38:1368:-89.7055,0,-201.519	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:265:0,264:0:0:264:9470:-851.894,-79.4719,0	1/1:118:0,118:0:0:118:4202:-378.359,-35.5215,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:245:9,236:9:324:236:8456:-731.532,-44.2465,0	0/1:35:16,19:16:576:19:684:-51.3543,0,-41.6389	0/1:254:161,93:161:5731:93:3302:-220.936,0,-439.443	0/1:64:27,37:27:968:37:1317:-99.5639,0,-68.1714	1/1:64:0,63:0:0:63:2264:-203.81,-18.9649,0	0/1:92:54,38:54:1936:38:1352:-94.2856,0,-146.822	1/1:140:0,140:0:0:140:5020:-451.938,-42.1442,0	0/1:182:130,52:130:4615:52:1853:-112.26,0,-360.725	1/1:138:0,138:0:0:138:4899:-441.061,-41.5421,0	1/1:107:0,107:0:0:107:3848:-346.514,-32.2102,0	1/1:156:0,155:0:0:155:5547:-498.993,-46.6597,0	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	1/1:152:0,151:0:0:151:5394:-485.229,-45.4555,0	1/1:28:0,28:0:0:28:993:-89.6825,-8.42884,0	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/1:118:83,35:83:2961:35:1245:-76.8312,0,-231.2	1/1:77:0,77:0:0:77:2757:-248.37,-23.1793,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/1:81:53,28:53:1889:28:1008:-66.6529,0,-145.903	0/1:104:56,48:56:2012:48:1720:-123.778,0,-150.046	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:185:0,184:0:0:184:6563:-590.391,-55.3895,0	0/1:224:124,99:124:4422:99:3532:-250.6,0,-330.66	0/1:73:33,40:33:1184:40:1440:-107.923,0,-84.8931	0/1:88:57,31:57:2048:31:1112:-73.9007,0,-158.101	1/1:191:5,186:5:180:186:6618:-579.146,-40.9447,0	0/1:124:98,26:98:3505:26:917:-45.5169,0,-278.331	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	1/1:57:0,57:0:0:57:2033:-183.24,-17.1587,0	0/1:86:42,44:42:1512:44:1584:-116.963,0,-110.486	0/1:28:20,8:20:690:8:288:-17.8386,0,-53.988	1/1:99:0,99:0:0:99:3507:-315.838,-29.802,0	1/1:70:0,70:0:0:70:2469:-222.46,-21.0721,0	1/1:162:0,161:0:0:161:5773:-519.322,-48.4658,0	1/1:122:0,122:0:0:122:4340:-390.775,-36.7257,0	0/1:163:76,87:76:2690:87:3109:-230.968,0,-193.275	1/1:45:0,45:0:0:45:1605:-144.738,-13.5464,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	1/1:99:0,99:0:0:99:3560:-320.607,-29.802,0	0/1:178:68,110:68:2364:110:3929:-300.218,0,-159.43	1/1:186:0,186:0:0:186:6666:-600.015,-55.9916,0	0/1:131:56,75:56:2004:75:2683:-202.279,0,-141.199	0/1:53:23,30:23:824:30:1076:-81.1983,0,-58.5287	1/1:79:0,79:0:0:79:2831:-255.028,-23.7814,0	0/1:129:62,67:62:2232:67:2404:-177.784,0,-162.311	0/1:33:16,17:16:556:17:612:-45.4794,0,-40.4332	1/1:94:0,94:0:0:94:3352:-301.896,-28.2968,0	1/1:64:0,64:0:0:64:2289:-206.27,-19.2659,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:48:23,25:23:828:25:896:-66.5109,0,-60.3947	0/1:56:27,29:27:972:29:1029:-76.0635,0,-70.9402	1/1:119:0,119:0:0:119:4253:-382.948,-35.8226,0	1/1:86:1,85:1:36:85:3060:-272.03,-22.2903,0
chr05	3933389	.	TATTA	TATTG,GATTG	662281	PASS	AB=0.471955,0.523647;ABP=79.1327,57.1322;AC=143,45;AF=0.760638,0.239362;AN=188;AO=18283,5879;CIGAR=4M1X,1X3M1X;DP=24264;DPB=24266;DPRA=0,1.32443;EPP=39704,12760.4;EPPR=7.35324;GTI=0;LEN=1,5;MEANALT=2.57447,3.0339;MQM=59.9809,59.8314;MQMR=60;NS=94;NUMALT=2;ODDS=9.5849;PAIRED=0,0;PAIREDR=0;PAO=4.5,5.5;PQA=149.5,185.5;PQR=0;PRO=0;QA=650334,206639;QR=72;RO=2;RPL=8423,2789;RPP=248.267,36.4748;RPPR=3.0103;RPR=9860,3090;RUN=1,1;SAF=8423,2788;SAP=248.267,36.9209;SAR=9860,3091;SRF=1;SRP=3.0103;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:85:0,34,51:0:0:34,51:1211,1771:-243.003,-144.295,-134.06,-99.0605,0,-83.708	1/1:467:0,467,0:0:0:467,0:16585,0:-1492.13,-140.581,0,-1492.13,-140.581,-1492.13	1/2:375:0,176,198:0:0:176,198:6295,6970:-1080.76,-567.454,-514.473,-513.411,0,-453.807	1/1:526:0,522,2:0:0:522,2:18521,72:-1666.18,-157.138,0,-1660.3,-151.208,-1659.7	1/1:191:0,190,0:0:0:190,0:6790,0:-610.893,-57.1957,0,-610.893,-57.1957,-610.893	1/1:160:0,158,2:0:0:158,2:5646,66:-507.93,-47.5627,0,-502.594,-41.8969,-501.992	1/2:326:0,166,159:0:0:166,159:5920,5576:-936.375,-453.792,-403.821,-482.646,0,-434.782	1/1:241:0,238,0:0:0:238,0:8427,0:-758.131,-71.6451,0,-758.131,-71.6451,-758.131	1/2:169:0,78,90:0:0:78,90:2745,3113:-476.368,-252.907,-229.426,-223.411,0,-196.318	1/1:225:0,222,0:0:0:222,0:7906,0:-711.326,-66.8287,0,-711.326,-66.8287,-711.326	1/1:167:0,167,0:0:0:167,0:5941,0:-534.8,-50.272,0,-534.8,-50.272,-534.8	1/1:188:0,187,0:0:0:187,0:6668,0:-599.946,-56.2926,0,-599.946,-56.2926,-599.946	1/2:161:0,84,77:0:0:84,77:2993,2726:-466.366,-222.405,-197.119,-244.315,0,-221.136	1/1:182:0,182,0:0:0:182,0:6459,0:-581.4,-54.7875,0,-581.4,-54.7875,-581.4	1/1:193:0,192,0:0:0:192,0:6842,0:-615.513,-57.7978,0,-615.513,-57.7978,-615.513	1/1:143:0,143,0:0:0:143,0:5093,0:-458.515,-43.0473,0,-458.515,-43.0473,-458.515	1/1:161:0,160,0:0:0:160,0:5715,0:-514.022,-48.1648,0,-514.022,-48.1648,-514.022	1/1:142:1,141,0:1:36:141,0:5002,0:-446.731,-39.148,0,-447.032,-42.4452,-449.969	1/1:95:0,95,0:0:0:95,0:3357,0:-302.348,-28.5979,0,-302.348,-28.5979,-302.348	1/2:703:0,337,363:0:0:337,363:12027,12829:-2025.29,-1044.8,-943.358,-980.494,0,-871.22	1/2:420:0,195,223:0:0:195,223:6925,7854:-1203.14,-638.88,-580.18,-564.257,0,-497.127	1/2:374:0,127,246:0:0:127,246:4520,8620:-1069.85,-701.468,-663.237,-368.446,0,-294.393	1/2:201:0,97,103:0:0:97,103:3442,3611:-574.268,-293.829,-264.629,-280.432,0,-249.426	1/1:245:0,229,15:0:0:229,15:8169,527:-734.878,-68.9359,0,-691.984,-25.9936,-687.468	1/1:217:0,216,0:0:0:216,0:7680,0:-690.989,-65.0225,0,-690.989,-65.0225,-690.989	1/1:869:0,863,3:0:0:863,3:30687,99:-2760.58,-259.789,0,-2752.57,-251.789,-2751.67	1/2:546:0,263,278:0:0:263,278:9371,9776:-1559.61,-795.774,-716.604,-763.862,0,-680.175	1/1:83:0,83,0:0:0:83,0:2960,0:-266.575,-24.9855,0,-266.575,-24.9855,-266.575	1/2:816:0,411,405:0:0:411,405:14660,14233:-2353.49,-1158.43,-1034.7,-1195.06,0,-1073.14	1/2:329:0,142,184:0:0:142,184:5041,6429:-933.685,-522.95,-480.204,-410.727,0,-355.338	1/2:257:0,128,128:0:0:128,128:4538,4507:-736.755,-367.051,-328.519,-369.837,0,-331.305	1/2:30:0,11,19:0:0:11,19:392,664:-86.3201,-54.365,-51.0537,-32.3087,0,-26.5892	1/1:61:0,61,0:0:0:61,0:2173,0:-195.836,-18.3628,0,-195.836,-18.3628,-195.836	1/2:30:0,18,12:0:0:18,12:640,410:-85.7421,-33.5782,-28.1596,-52.5108,0,-48.8984	1/1:30:0,30,0:0:0:30,0:1067,0:-96.3412,-9.0309,0,-96.3412,-9.0309,-96.3412	1/2:53:0,38,15:0:0:38,15:1349,537:-154.062,-44.1499,-32.7107,-110.269,0,-105.754	1/1:463:1,462,0:1:36:462,0:16375,0:-1469.84,-135.779,0,-1470.14,-139.076,-1473.08	1/1:468:0,464,2:0:0:464,2:16453,72:-1480.13,-139.678,0,-1474.25,-133.766,-1473.65	1/1:190:0,189,0:0:0:189,0:6706,0:-603.281,-56.8947,0,-603.281,-56.8947,-603.281	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:487:0,478,8:0:0:478,8:17003,270:-1529.57,-143.892,0,-1507.69,-122.012,-1505.28	1/2:77:0,38,39:0:0:38,39:1368,1373:-223.75,-112.125,-100.685,-111.982,0,-100.242	1/2:480:0,247,231:0:0:247,231:8765,8114:-1374.44,-660.306,-585.952,-714.165,0,-644.627	1/2:184:0,93,89:0:0:93,89:3315,3136:-525.641,-255.421,-227.425,-270.321,0,-243.529	1/1:169:0,169,0:0:0:169,0:6016,0:-541.547,-50.8741,0,-541.547,-50.8741,-541.547	1/2:286:0,116,169:0:0:116,169:4138,5954:-822.074,-484.745,-449.825,-337.325,0,-286.45	1/1:301:0,299,0:0:0:299,0:10611,0:-954.459,-90.008,0,-954.459,-90.008,-954.459	1/2:501:0,228,272:0:0:228,272:8102,9515:-1434.3,-774.084,-705.449,-660.207,0,-578.327	1/1:310:0,307,0:0:0:307,0:10921,0:-982.458,-92.4162,0,-982.458,-92.4162,-982.458	1/1:283:0,281,0:0:0:281,0:9987,0:-898.415,-84.5894,0,-898.415,-84.5894,-898.415	1/1:378:0,374,1:0:0:374,1:13325,36:-1198.74,-112.585,0,-1195.8,-109.632,-1195.5	1/2:43:0,14,29:0:0:14,29:496,1008:-122.708,-82.2999,-78.0855,-40.7598,0,-32.03	1/1:366:0,365,0:0:0:365,0:12996,0:-1169.12,-109.876,0,-1169.12,-109.876,-1169.12	1/1:186:0,185,0:0:0:185,0:6596,0:-593.36,-55.6906,0,-593.36,-55.6906,-593.36	1/2:43:0,20,23:0:0:20,23:712,825:-125.671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chr05	3942695	.	G	A	106812	PASS	AB=0.421279;ABP=203.353;AC=142;AF=0.755319;AN=188;AO=5174;CIGAR=1X;DP=7342;DPB=7342;DPRA=0;EPP=10842.2;EPPR=4445.35;GTI=1;LEN=1;MEANALT=1;MQM=44.5489;MQMR=59.3501;NS=94;NUMALT=1;ODDS=1.69693;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184891;QR=77363;RO=2168;RPL=43;RPP=10867.8;RPPR=4445.35;RPR=5131;RUN=1;SAF=5171;SAP=11212.2;SAR=3;SRF=2168;SRP=4710.76;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:30,15:30:1071:15:540:-34.652,0,-83.1549	1/1:52:0,52:0:0:52:1849:-163.354,-15.6536,0	0/1:119:82,37:82:2910:37:1297:-79.4085,0,-226.177	1/1:182:0,182:0:0:182:6493:-573.923,-54.7875,0	1/1:43:0,43:0:0:43:1540:-135.991,-12.9443,0	1/1:18:0,18:0:0:18:647:-57.2917,-5.41854,0	0/1:103:46,57:46:1648:57:2040:-149.743,0,-117.266	1/1:137:0,137:0:0:137:4897:-433.946,-41.2411,0	0/1:155:71,84:71:2520:84:2989:-217.745,0,-179.643	1/1:85:0,85:0:0:85:3044:-269.179,-25.5876,0	1/1:58:0,58:0:0:58:2050:-181.715,-17.4597,0	1/1:113:0,113:0:0:113:4045:-358.117,-34.0164,0	0/1:69:35,34:35:1252:34:1224:-88.1359,0,-92.0968	1/1:61:0,61:0:0:61:2168:-191.677,-18.3628,0	1/1:63:0,63:0:0:63:2247:-199.748,-18.9649,0	1/1:61:1,60:1:36:60:2140:-185.102,-14.7646,0	1/1:30:0,30:0:0:30:1072:-95.4028,-9.0309,0	1/1:32:0,32:0:0:32:1152:-102.552,-9.63296,0	1/1:40:0,40:0:0:40:1432:-126.949,-12.0412,0	0/1:121:61,60:61:2171:60:2148:-152.284,0,-159.181	0/1:129:54,75:54:1928:75:2654:-195.678,0,-134.879	0/1:122:85,37:85:3019:37:1328:-80.9485,0,-235.048	0/1:116:73,43:73:2608:43:1548:-102.738,0,-199.874	0/1:25:6,19:6:216:19:680:-52.6078,0,-12.2648	1/1:82:0,82:0:0:82:2920:-257.511,-24.6845,0	1/1:168:0,168:0:0:168:6020:-530.796,-50.573,0	0/1:238:154,84:154:5502:84:3001:-194.327,0,-423.407	1/1:35:0,35:0:0:35:1256:-111.287,-10.5361,0	0/1:214:116,98:116:4131:98:3488:-244.752,0,-307.33	0/1:105:58,47:58:2070:47:1676:-116.703,0,-154.334	0/1:64:24,40:24:864:40:1436:-108.502,0,-58.7558	0/1:11:5,6:5:180:6:212:-15.8666,0,-13.2403	1/1:16:0,16:0:0:16:568:-50.7833,-4.81648,0	0/1:12:2,10:2:72:10:356:-28.3427,0,-3.22436	1/1:13:0,13:0:0:13:468:-41.3571,-3.91339,0	0/1:37:17,20:17:604:20:720:-52.0511,0,-43.5074	1/1:193:0,193:0:0:193:6900:-609.507,-58.0988,0	1/1:109:0,109:0:0:109:3878:-344.374,-32.8123,0	1/1:47:0,47:0:0:47:1684:-149.707,-14.1484,0	1/1:11:0,11:0:0:11:396:-35.4852,-3.31133,0	1/1:128:2,126:2:72:126:4493:-389.129,-31.6951,0	0/1:39:27,12:27:964:12:428:-26.5307,0,-75.3353	0/1:119:64,55:64:2291:55:1964:-136.254,0,-170.51	0/1:58:27,31:27:972:31:1112:-81.479,0,-70.2596	1/1:77:0,77:0:0:77:2741:-242.529,-23.1793,0	0/1:121:59,62:59:2112:62:2216:-158.845,0,-153.917	1/1:92:0,92:0:0:92:3274:-290.08,-27.6948,0	0/1:110:81,29:81:2884:29:1040:-58.9611,0,-226.546	1/1:96:1,95:1:36:95:3412:-298.532,-25.3006,0	1/1:64:0,64:0:0:64:2278:-202.007,-19.2659,0	1/1:25:0,25:0:0:25:869:-77.5485,-7.52575,0	0/1:12:6,6:6:216:6:212:-15.5655,0,-16.1782	1/1:57:0,57:0:0:57:2044:-181.644,-17.1587,0	1/1:58:0,58:0:0:58:2067:-182.767,-17.4597,0	0/1:7:3,4:3:108:4:144:-10.9068,0,-7.96796	0/1:126:73,53:73:2628:53:1896:-130.678,0,-198.781	1/1:49:0,49:0:0:49:1756:-155.624,-14.7505,0	0/1:10:8,2:8:284:2:72:-3.73188,0,-22.8694	0/1:30:25,5:25:892:5:180:-7.24166,0,-71.5676	0/1:63:32,31:32:1139:31:1108:-79.7256,0,-83.7974	0/1:115:76,39:76:2724:39:1404:-89.7768,0,-210.672	0/1:24:18,6:18:644:6:216:-11.7717,0,-51.0659	1/1:48:0,48:0:0:48:1716:-152.066,-14.4494,0	0/1:103:46,57:46:1652:57:2036:-149.179,0,-117.906	0/1:52:37,15:37:1316:15:540:-32.6062,0,-103.087	0/1:68:35,33:35:1243:33:1184:-84.8178,0,-91.7038	1/1:148:3,145:3:99:145:5164:-446.169,-35.3159,0	0/1:132:93,39:93:3332:39:1404:-84.1357,0,-260.219	0/1:68:48,20:48:1711:20:702:-41.8476,0,-133.796	1/1:39:0,39:0:0:39:1392:-123.884,-11.7402,0	0/1:37:28,9:28:995:9:320:-17.6228,0,-78.669	0/1:41:20,21:20:708:21:750:-53.84,0,-51.6395	1/1:181:0,181:0:0:181:6473:-570.639,-54.4864,0	1/1:75:1,74:1:36:74:2644:-230.83,-18.979,0	1/1:82:0,82:0:0:82:2932:-259.371,-24.6845,0	1/1:80:1,79:1:36:79:2836:-248.385,-20.4841,0	0/1:95:57,38:57:2027:38:1364:-92.3335,0,-154.048	1/1:69:0,69:0:0:69:2480:-220.335,-20.7711,0	0/1:15:6,9:6:208:9:324:-24.5824,0,-14.5199	1/1:54:2,52:2:72:52:1860:-158.349,-9.4189,0	0/1:70:39,31:39:1400:31:1097:-76.6201,0,-105.147	1/1:214:0,214:0:0:214:7665:-675.385,-64.4204,0	0/1:51:29,22:29:1040:22:788:-54.9285,0,-78.4484	0/1:73:48,25:48:1716:25:896:-57.8621,0,-132.693	1/1:38:1,37:1:32:37:1324:-114.649,-8.23983,0	0/1:142:74,68:74:2638:68:2427:-171.77,0,-194.804	0/1:17:9,8:9:316:8:284:-20.438,0,-23.6047	1/1:80:0,80:0:0:80:2868:-253.923,-24.0824,0	1/1:76:0,76:0:0:76:2732:-240.607,-22.8783,0	1/1:33:0,33:0:0:33:1184:-104.888,-9.93399,0	0/1:173:119,54:119:4231:54:1916:-118.222,0,-328.638	0/1:66:48,18:48:1715:18:648:-37.4587,0,-133.953	1/1:4:0,4:0:0:4:144:-13.1295,-1.20412,0	1/1:104:2,102:2:72:102:3668:-316.476,-24.4704,0
chr05	3942713	.	G	A	38025.3	PASS	AB=0.576574;ABP=193.898;AC=46;AF=0.244681;AN=188;AO=2170;CIGAR=1X;DP=7401;DPB=7401;DPRA=1.10566;EPP=4715.11;EPPR=11335.9;GTI=1;LEN=1;MEANALT=1;MQM=59.294;MQMR=44.6035;NS=94;NUMALT=1;ODDS=1.95525;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77687;QR=186592;RO=5231;RPL=2170;RPP=4715.11;RPPR=11362;RPR=0;RUN=1;SAF=2170;SAP=4715.11;SAR=0;SRF=5228;SRP=11335.9;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:14,30:14:495:30:1080:-84.2675,0,-31.0449	0/0:53:53,0:53:1895:0:0:0,-15.9546,-167.418	0/1:119:38,81:38:1364:81:2885:-223.943,0,-85.0341	0/0:182:182,0:182:6492:0:0:0,-54.7875,-573.179	0/0:43:43,0:43:1540:0:0:0,-12.9443,-135.991	0/0:18:18,0:18:633:0:0:0,-5.41854,-56.013	0/1:106:56,50:56:2004:50:1792:-129.317,0,-145.646	0/0:132:132,0:132:4735:0:0:0,-39.736,-419.684	0/1:155:87,68:87:3120:68:2423:-169.916,0,-229.223	0/0:85:85,0:85:3056:0:0:0,-25.5875,-270.165	0/0:58:58,0:58:2049:0:0:0,-17.4597,-181.663	0/0:118:118,0:118:4155:0:0:0,-35.5215,-368.794	0/1:71:34,37:34:1194:37:1327:-98.2528,0,-84.9972	0/0:60:60,0:60:2139:0:0:0,-18.0618,-189.19	0/0:62:62,0:62:2232:0:0:0,-18.6639,-198.326	0/0:62:62,0:62:2220:0:0:0,-18.6639,-195.799	0/0:29:29,0:29:1040:0:0:0,-8.72987,-92.5431	0/0:32:32,0:32:1143:0:0:0,-9.63296,-101.78	0/0:40:40,0:40:1410:0:0:0,-12.0412,-125.067	0/1:123:61,62:61:2176:62:2211:-162.177,0,-154.326	0/1:133:76,57:76:2709:57:2048:-144.414,0,-198.63	0/1:124:38,86:38:1355:86:3078:-239.788,0,-82.7681	0/1:115:44,71:44:1580:71:2556:-195.544,0,-105.899	0/1:24:19,5:19:671:5:180:-9.32734,0,-52.1187	0/0:84:84,0:84:2980:0:0:0,-25.2865,-262.719	0/0:172:172,0:172:6118:0:0:0,-51.7772,-539.837	0/1:237:85,152:85:3043:152:5429:-417.183,0,-198.358	0/0:35:35,0:35:1238:0:0:0,-10.536,-109.742	0/1:214:99,115:99:3520:115:4128:-307.058,0,-248.129	0/1:108:51,57:51:1782:57:2036:-150.374,0,-124.948	0/1:67:43,24:43:1536:24:864:-57.8527,0,-115.973	0/1:11:6,5:6:216:5:180:-13.2403,0,-16.2055	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.4535	0/1:10:8,2:8:279:2:72:-3.82642,0,-22.1134	0/0:13:13,0:13:464:0:0:0,-3.91339,-41.0215	0/1:38:22,16:22:792:16:562:-39.4585,0,-58.228	0/0:189:189,0:189:6746:0:0:0,-56.8947,-595.871	0/0:113:113,0:113:4026:0:0:0,-34.0164,-357.156	0/0:47:47,0:47:1679:0:0:0,-14.1484,-149.263	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.149	0/0:131:129,2:129:4623:2:72:0,-32.5982,-400.092	0/1:39:12,27:12:428:27:972:-76.0544,0,-26.5307	0/1:118:53,65:53:1891:65:2336:-174.859,0,-131.123	0/1:63:33,30:33:1184:30:1076:-78.0226,0,-86.3613	0/0:78:78,0:78:2770:0:0:0,-23.4803,-245.155	0/1:119:61,58:61:2184:58:2084:-151.941,0,-156.332	0/0:93:93,0:93:3314:0:0:0,-27.9958,-293.618	0/1:111:28,83:28:1004:83:2958:-232.917,0,-55.4663	0/0:98:98,0:98:3515:0:0:0,-29.5009,-311.651	0/0:66:66,0:66:2334:0:0:0,-19.868,-206.953	0/0:25:25,0:25:878:0:0:0,-7.52575,-78.3158	0/1:13:6,7:6:216:7:252:-19.1109,0,-15.6034	0/0:59:59,0:59:2120:0:0:0,-17.7608,-188.323	0/0:55:55,0:55:1976:0:0:0,-16.5566,-174.624	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.6057	0/1:124:54,70:54:1920:70:2518:-189.507,0,-133.439	0/0:53:53,0:53:1883:0:0:0,-15.9546,-166.96	0/1:12:3,9:3:108:9:324:-25.8369,0,-6.32348	0/1:31:6,25:6:208:25:900:-71.9879,0,-9.45662	0/1:63:31,32:31:1112:32:1137:-83.6159,0,-80.0596	0/1:117:39,78:39:1395:78:2776:-214.748,0,-88.4028	0/1:24:6,18:6:216:18:640:-50.7046,0,-11.7717	0/0:51:51,0:51:1808:0:0:0,-15.3525,-160.252	0/1:106:59,47:59:2111:47:1680:-119.519,0,-154.699	0/1:53:16,37:16:576:37:1332:-104.227,0,-34.9843	0/1:68:33,35:33:1179:35:1260:-93.2354,0,-84.3793	0/0:150:147,3:147:5258:3:108:0,-35.0793,-453.682	0/1:133:39,94:39:1404:94:3372:-263.516,0,-83.8347	0/1:68:21,47:21:752:47:1673:-130.377,0,-46.1035	0/0:39:39,0:39:1386:0:0:0,-11.7402,-123.351	0/1:37:9,28:9:324:28:1008:-79.8359,0,-17.9597	0/1:42:20,22:20:711:22:784:-58.1142,0,-50.1716	0/0:191:191,0:191:6854:0:0:0,-57.4967,-604.809	0/0:76:75,1:75:2681:1:36:0,-19.28,-234.018	0/0:81:81,0:81:2880:0:0:0,-24.3834,-254.421	0/0:80:80,0:80:2851:0:0:0,-24.0824,-253.465	0/1:97:41,56:41:1472:56:2016:-152.457,0,-101.313	0/0:70:70,0:70:2495:0:0:0,-21.0721,-221.752	0/1:15:9,6:9:324:6:216:-15.2181,0,-24.5824	0/0:55:53,2:53:1904:2:72:0,-9.71993,-161.851	0/1:70:33,37:33:1180:37:1328:-98.6931,0,-83.9373	0/0:214:214,0:214:7684:0:0:0,-64.4204,-676.615	0/1:49:22,27:22:784:27:972:-72.9343,0,-55.1961	0/1:76:26,50:26:915:50:1780:-137.548,0,-58.7113	0/0:39:38,1:38:1345:1:36:0,-8.14189,-116.134	0/1:137:63,74:63:2242:74:2654:-197.765,0,-157.982	0/1:17:8,9:8:284:9:324:-24.3317,0,-20.438	0/0:78:78,0:78:2765:0:0:0,-23.4803,-244.971	0/0:77:77,0:77:2760:0:0:0,-23.1793,-243.635	0/0:31:31,0:31:1112:0:0:0,-9.33193,-98.5005	0/1:175:54,121:54:1843:121:4328:-336.717,0,-111.151	0/1:64:17,47:17:612:47:1668:-130.304,0,-34.8669	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1295	0/0:105:105,0:105:3735:0:0:0,-31.6081,-329.67
chr05	3942717	.	G	A	105809	PASS	AB=0.427187;ABP=174.087;AC=142;AF=0.755319;AN=188;AO=5224;CIGAR=1X;DP=7368;DPB=7368;DPRA=0;EPP=11320.7;EPPR=4645.62;GTI=1;LEN=1;MEANALT=1.06383;MQM=44.559;MQMR=59.3639;NS=94;NUMALT=1;ODDS=2.6844;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186547;QR=75817;RO=2138;RPL=5224;RPP=11346.8;RPPR=4645.62;RPR=0;RUN=1;SAF=5221;SAP=11320.7;SAR=3;SRF=2138;SRP=4645.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:30,15:30:1068:15:536:-34.3167,0,-82.8856	1/1:54:0,54:0:0:54:1912:-168.992,-16.2556,0	0/1:120:80,39:80:2864:39:1400:-87.9854,0,-221.853	1/1:182:0,182:0:0:182:6482:-573.482,-54.7875,0	1/1:43:0,43:0:0:43:1548:-136.658,-12.9443,0	1/1:18:0,18:0:0:18:648:-57.3154,-5.41854,0	0/1:105:49,56:49:1732:56:2012:-146.676,0,-124.239	1/1:133:0,133:0:0:133:4764:-422.185,-40.037,0	0/1:155:69,86:69:2463:86:3076:-225.369,0,-173.822	1/1:85:0,85:0:0:85:3044:-269.287,-25.5876,0	1/1:54:0,54:0:0:54:1901:-169.135,-16.2556,0	1/1:120:0,120:0:0:120:4277:-379.301,-36.1236,0	0/1:67:34,33:34:1212:33:1165:-83.522,0,-89.1564	1/1:63:1,62:1:36:62:2216:-191.823,-15.3666,0	1/1:63:0,63:0:0:63:2264:-201.186,-18.9649,0	1/1:61:0,61:0:0:61:2168:-191.272,-18.3628,0	1/1:30:0,30:0:0:30:1072:-95.4028,-9.0309,0	1/1:32:0,32:0:0:32:1136:-101.216,-9.63296,0	1/1:39:1,38:1:36:38:1355:-116.503,-8.1419,0	0/1:123:61,62:61:2192:62:2209:-157.095,0,-160.468	0/1:131:55,76:55:1968:76:2706:-199.147,0,-137.876	0/1:123:84,39:84:2992:39:1396:-86.7012,0,-232.315	0/1:118:73,45:73:2599:45:1597:-106.548,0,-198.455	0/1:24:5,19:5:180:19:676:-52.6191,0,-9.32734	1/1:81:1,80:1:36:80:2849:-249.107,-21.4027,0	1/1:172:0,172:0:0:172:6163:-543.43,-51.7772,0	0/1:238:152,85:152:5386:85:3048:-198.465,0,-412.946	1/1:35:0,35:0:0:35:1256:-111.287,-10.5361,0	0/1:214:113,101:113:4011:101:3569:-251.961,0,-296.567	0/1:107:58,49:58:2084:49:1734:-121.388,0,-155.62	0/1:62:21,41:21:748:41:1460:-110.784,0,-48.9252	0/1:10:4,6:4:144:6:212:-16.1676,0,-10.3029	1/1:15:0,15:0:0:15:540:-48.2598,-4.51545,0	0/1:12:2,10:2:72:10:352:-28.0062,0,-3.22436	1/1:13:0,13:0:0:13:468:-41.3571,-3.91339,0	0/1:38:17,20:17:599:20:720:-52.3011,0,-42.8292	1/1:190:0,190:0:0:190:6791:-599.801,-57.1957,0	1/1:112:0,112:0:0:112:4016:-355.594,-33.7154,0	1/1:48:0,48:0:0:48:1720:-152.859,-14.4494,0	1/1:11:0,11:0:0:11:396:-35.4852,-3.31133,0	1/1:132:2,130:2:72:130:4660:-403.09,-32.8992,0	0/1:39:27,12:27:964:12:432:-26.8524,0,-75.3333	0/1:116:63,53:63:2212:53:1896:-131.103,0,-164.303	0/1:56:25,31:25:888:31:1108:-81.7471,0,-63.3252	1/1:79:0,79:0:0:79:2827:-250.119,-23.7814,0	0/1:122:60,62:60:2148:62:2212:-157.956,0,-156.795	1/1:95:0,95:0:0:95:3407:-301.378,-28.5979,0	0/1:110:81,28:81:2855:28:1004:-55.8104,0,-223.935	1/1:99:0,99:0:0:99:3548:-314.477,-29.802,0	1/1:65:0,65:0:0:65:2309:-204.623,-19.567,0	1/1:24:0,24:0:0:24:856:-76.3342,-7.22472,0	0/1:13:7,6:7:252:6:212:-15.2645,0,-19.1109	1/1:60:0,60:0:0:60:2140:-190.206,-18.0618,0	1/1:55:0,55:0:0:55:1968:-174.469,-16.5567,0	0/1:8:4,4:4:144:4:144:-10.6057,0,-10.9054	0/1:125:70,55:70:2484:55:1945:-135.436,0,-186.13	1/1:52:0,52:0:0:52:1852:-164.205,-15.6536,0	0/1:11:8,3:8:288:3:108:-6.62451,0,-22.9561	0/1:30:25,5:25:892:5:176:-6.9268,0,-71.5676	0/1:63:31,32:31:1100:32:1148:-83.2533,0,-80.3454	0/1:114:76,38:76:2679:38:1364:-86.5504,0,-206.927	0/1:23:18,5:18:648:5:180:-8.87714,0,-51.7282	1/1:50:0,50:0:0:50:1796:-159.12,-15.0515,0	0/1:102:47,55:47:1659:55:1953:-142.356,0,-118.83	0/1:52:36,16:36:1267:16:576:-35.2854,0,-98.6772	0/1:68:36,32:36:1273:32:1144:-81.2902,0,-94.4009	1/1:149:2,147:2:72:147:5219:-454.167,-38.0167,0	0/1:132:92,40:92:3291:40:1428:-85.816,0,-256.53	0/1:66:45,21:45:1595:21:756:-47.0401,0,-123.963	1/1:39:0,39:0:0:39:1388:-123.551,-11.7402,0	0/1:36:27,9:27:959:9:324:-18.2607,0,-75.7321	0/1:41:20,21:20:697:21:752:-53.7177,0,-50.6485	1/1:188:0,188:0:0:188:6731:-594.526,-56.5936,0	1/1:75:1,74:1:36:74:2643:-230.729,-18.979,0	1/1:81:3,77:3:108:77:2764:-235.068,-14.9806,0	1/1:81:0,81:0:0:81:2881:-256.123,-24.3834,0	0/1:98:57,41:57:2006:41:1464:-100.344,0,-151.253	1/1:70:0,70:0:0:70:2497:-221.84,-21.0721,0	0/1:13:5,8:5:172:8:288:-21.9908,0,-11.8474	1/1:54:2,52:2:72:52:1868:-158.718,-9.4189,0	0/1:72:38,34:38:1321:34:1212:-86.2119,0,-97.5021	1/1:214:0,214:0:0:214:7635:-673.21,-64.4204,0	0/1:47:25,22:25:892:22:788:-56.1326,0,-66.3381	0/1:74:49,25:49:1731:25:896:-57.5611,0,-133.741	1/1:39:1,38:1:32:38:1356:-117.502,-8.54086,0	0/1:140:73,67:73:2565:67:2383:-168.301,0,-188.84	0/1:16:8,8:8:258:8:284:-20.739,0,-18.6598	1/1:80:0,80:0:0:80:2838:-251.814,-24.0824,0	1/1:77:0,76:0:0:76:2713:-239.138,-22.8783,0	1/1:32:0,32:0:0:32:1148:-101.694,-9.63296,0	0/1:170:116,54:116:4060:54:1924:-119.447,0,-314.185	0/1:66:48,18:48:1703:18:648:-37.4587,0,-132.818	1/1:4:0,4:0:0:4:144:-13.1295,-1.20412,0	1/1:105:0,105:0:0:105:3756:-331.71,-31.6082,0
chr05	3963880	.	A	G	38943.1	PASS	AB=0.455006;ABP=79.4146;AC=22;AF=0.117021;AN=188;AO=2002;CIGAR=1X;DP=13692;DPB=13692;DPRA=1.57024;EPP=4341.62;EPPR=25170.8;GTI=4;LEN=1;MEANALT=1;MQM=45.0699;MQMR=43.5277;NS=94;NUMALT=1;ODDS=0.626359;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70910;QR=414706;RO=11690;RPL=894;RPP=52.683;RPPR=4.79429;RPR=1108;RUN=1;SAF=895;SAP=51.7589;SAR=1107;SRF=5819;SRP=3.51258;SRR=5871;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:964:0:0:0,-8.12781,-58.2531	0/0:140:140,0:140:4999:0:0:0,-42.1442,-350.832	0/0:238:238,0:238:8391:0:0:0,-71.6451,-584.966	0/0:321:320,1:320:11298:1:36:0,-93.3316,-902.956	0/0:47:47,0:47:1663:0:0:0,-14.1484,-128.39	0/0:75:75,0:75:2658:0:0:0,-22.5772,-201.41	0/0:345:345,0:345:12169:0:0:0,-103.855,-967.798	0/0:233:233,0:233:8259:0:0:0,-70.14,-595.618	0/0:76:76,0:76:2690:0:0:0,-22.8783,-207.527	0/0:91:91,0:91:3247:0:0:0,-27.3937,-266.235	0/0:102:102,0:102:3618:0:0:0,-30.7051,-286.026	0/0:134:134,0:134:4740:0:0:0,-40.338,-350.481	0/0:122:122,0:122:4347:0:0:0,-36.7257,-335.583	0/0:46:46,0:46:1636:0:0:0,-13.8474,-122.148	0/0:105:105,0:105:3723:0:0:0,-31.6081,-291.521	0/0:86:86,0:86:3037:0:0:0,-25.8886,-232.511	0/0:98:98,0:98:3482:0:0:0,-29.5009,-241.508	0/0:63:63,0:63:2236:0:0:0,-18.9649,-175.305	0/0:81:81,0:81:2900:0:0:0,-24.3834,-219.303	0/0:192:192,0:192:6804:0:0:0,-57.7978,-534.11	0/0:351:351,0:351:12395:0:0:0,-105.662,-949.427	0/0:80:80,0:80:2864:0:0:0,-24.0824,-241.007	0/0:165:165,0:165:5881:0:0:0,-49.6699,-446.019	0/1:290:145,145:145:5074:145:5153:-338.357,0,-280.699	0/0:96:96,0:96:3396:0:0:0,-28.8989,-254.72	0/1:725:392,333:392:14021:333:11830:-811.207,0,-955.502	0/0:221:221,0:221:7883:0:0:0,-66.5276,-600.038	0/1:127:82,45:82:2932:45:1560:-92.1761,0,-195.197	0/0:397:397,0:397:14043:0:0:0,-119.509,-1165.96	0/0:172:168,4:168:5986:4:144:0,-39.3416,-443.645	0/1:333:204,129:204:7244:129:4599:-289.885,0,-472.162	0/1:10:8,2:8:279:2:72:-3.37552,0,-17.7496	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.20618	0/1:9:5,4:5:180:4:144:-10.596,0,-11.7611	0/0:9:9,0:9:324:0:0:0,-2.70927,-15.0346	0/1:15:6,9:6:212:9:324:-22.7399,0,-11.0485	0/0:373:373,0:373:13314:0:0:0,-112.284,-1123.72	0/0:77:77,0:77:2747:0:0:0,-23.1793,-206.376	0/0:51:51,0:51:1832:0:0:0,-15.3525,-135.361	0/0:2:2,0:2:68:0:0:0,-0.60206,-4.10941	0/1:447:286,161:286:10172:161:5696:-343.896,0,-652.103	0/1:49:28,21:28:1004:21:756:-48.5424,0,-55.6262	0/0:248:248,0:248:8895:0:0:0,-74.6554,-676.535	0/0:162:162,0:162:5760:0:0:0,-48.7669,-459.266	0/0:49:49,0:49:1730:0:0:0,-14.7505,-140.605	0/0:49:49,0:49:1752:0:0:0,-14.7505,-147.503	0/0:176:176,0:176:6240:0:0:0,-52.9813,-435.963	0/1:399:226,173:226:8004:173:6126:-404.518,0,-514.68	0/0:161:161,0:161:5740:0:0:0,-48.4658,-443.618	0/0:105:105,0:105:3716:0:0:0,-31.6081,-296.393	0/0:117:116,1:116:4093:1:36:0,-31.6222,-329.076	0/0:4:4,0:4:135:0:0:0,-1.20412,-11.2059	0/1:290:132,158:132:4664:158:5564:-357.672,0,-257.7	0/0:60:60,0:60:2135:0:0:0,-18.0618,-171.655	0/1:16:7,9:7:252:9:309:-20.3656,0,-12.4457	0/1:339:218,121:218:7676:121:4248:-247.012,0,-478.677	0/0:135:135,0:135:4764:0:0:0,-40.639,-380.537	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.01922	0/0:10:10,0:10:360:0:0:0,-3.0103,-30.8591	0/0:176:174,2:174:6171:2:72:0,-47.0464,-471.667	0/0:184:184,0:184:6505:0:0:0,-55.3895,-535.439	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.49235	0/0:206:206,0:206:7313:0:0:0,-62.0122,-604.346	0/0:138:135,3:135:4793:3:104:0,-31.8393,-366.676	0/1:163:68,95:68:2423:95:3338:-231.899,0,-124.435	0/0:92:92,0:92:3221:0:0:0,-27.6948,-246.894	0/0:231:231,0:231:8187:0:0:0,-69.5379,-642.58	0/0:75:72,3:72:2571:3:108:0,-13.34,-199.911	0/0:65:65,0:65:2324:0:0:0,-19.5669,-180.527	0/0:87:87,0:87:3059:0:0:0,-26.1896,-203.468	0/0:175:175,0:175:6248:0:0:0,-52.6802,-526.019	0/1:40:27,13:27:955:13:464:-28.1549,0,-61.6299	0/0:79:79,0:79:2771:0:0:0,-23.7814,-198.53	0/1:145:65,80:65:2302:80:2872:-190.78,0,-132.851	0/0:369:369,0:369:13036:0:0:0,-111.08,-977.347	0/0:144:144,0:144:5100:0:0:0,-43.3483,-402.307	0/1:202:75,127:75:2692:127:4510:-296.042,0,-131.882	0/0:119:113,6:113:3986:6:212:0,-17.8535,-274.172	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.1842	0/0:112:108,4:108:3840:4:144:0,-21.851,-296.34	0/1:227:151,76:151:5351:76:2695:-153.184,0,-316.889	0/0:393:392,1:392:13879:1:36:0,-115.006,-1115.49	0/0:95:95,0:95:3400:0:0:0,-28.5978,-275.667	0/0:90:90,0:90:3193:0:0:0,-27.0927,-253.252	0/0:67:67,0:67:2376:0:0:0,-20.169,-185.188	0/0:102:102,0:102:3652:0:0:0,-30.7051,-300.194	0/0:35:35,0:35:1248:0:0:0,-10.536,-91.123	0/1:118:55,63:55:1951:63:2226:-147.11,0,-106.238	0/1:158:97,61:97:3419:61:2170:-134.022,0,-198.916	0/0:31:31,0:31:1112:0:0:0,-9.33193,-85.0549	0/1:127:57,70:57:2024:70:2464:-167.05,0,-116.045	0/1:116:34,82:34:1198:82:2898:-210.519,0,-64.2284	0/0:169:169,0:169:5944:0:0:0,-50.8741,-475.087	0/0:209:209,0:209:7402:0:0:0,-62.9153,-590.094
chr05	3964316	.	T	C	70848.2	PASS	AB=0.549987;ABP=164.959;AC=98;AF=0.526882;AN=186;AO=4118;CIGAR=1X;DP=7476;DPB=7476;DPRA=0;EPP=8945.13;EPPR=7288.3;GTI=4;LEN=1;MEANALT=1.03226;MQM=50.6736;MQMR=34.2063;NS=93;NUMALT=1;ODDS=1.09676;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147235;QR=119970;RO=3355;RPL=0;RPP=8945.13;RPPR=7288.3;RPR=4118;RUN=1;SAF=4118;SAP=8945.13;SAR=0;SRF=3355;SRP=7288.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:22,22:22:792:22:792:-55.8876,0,-46.6644	0/1:99:21,78:21:752:78:2770:-216.728,0,-27.2178	0/1:87:55,32:55:1976:32:1140:-75.9194,0,-120.71	0/1:121:59,62:59:2090:62:2213:-162.167,0,-135.448	0/1:34:16,18:16:576:18:625:-46.003,0,-34.9214	0/1:27:13,14:13:453:14:500:-36.9712,0,-26.7776	0/1:132:42,90:42:1489:90:3184:-245.549,0,-82.4887	0/1:136:69,67:69:2476:67:2404:-172.842,0,-146.276	0/1:70:27,43:27:938:43:1536:-116.125,0,-51.517	0/1:104:59,45:59:2090:45:1612:-113.217,0,-141.794	0/1:27:18,9:18:644:9:324:-21.3219,0,-44.4696	0/1:77:30,47:30:1080:47:1688:-126.557,0,-58.313	0/1:34:17,17:17:612:17:612:-44.4657,0,-34.8883	0/1:54:31,23:31:1116:23:828:-58.3362,0,-72.2211	0/1:52:22,30:22:792:30:1076:-80.1848,0,-48.6323	0/1:49:30,19:30:1080:19:680:-46.1251,0,-69.3441	0/1:77:17,60:17:612:60:2152:-169.656,0,-22.8462	0/1:17:4,13:4:144:13:468:-36.858,0,-6.18428	0/1:45:13,32:13:464:32:1148:-89.0067,0,-21.4768	0/1:130:41,89:41:1449:89:3173:-245.562,0,-78.553	0/1:126:89,37:89:3166:37:1313:-79.4307,0,-211.75	0/1:73:21,52:21:756:52:1850:-143.936,0,-40.5053	0/1:76:31,45:31:1108:45:1599:-120.793,0,-67.9797	0/1:68:29,39:29:1044:39:1393:-104.697,0,-61.4498	0/1:86:42,44:42:1493:44:1571:-114.413,0,-92.5611	0/1:168:61,107:61:2196:107:3840:-293.038,0,-132.831	0/1:141:64,77:64:2300:77:2756:-201.239,0,-138.152	0/1:57:30,27:30:1080:27:968:-69.1994,0,-67.4639	0/1:191:127,64:127:4545:64:2292:-148.118,0,-318.954	0/1:81:36,45:36:1296:45:1616:-117.757,0,-78.7169	0/1:88:54,34:54:1906:34:1220:-82.0955,0,-129.154	1/1:2:0,2:0:0:2:57:-5.40175,-0.60206,0	0/1:11:3,8:3:108:8:288:-21.8304,0,-5.88755	0/1:5:4,1:4:129:1:23:-0.784129,0,-9.33552	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	0/1:9:8,1:8:288:1:36:-0.869497,0,-19.5889	0/1:155:71,84:71:2526:84:3015:-223.721,0,-162.844	0/1:154:21,133:21:752:133:4749:-378.036,0,-11.9538	0/1:59:25,33:25:888:33:1184:-88.0361,0,-50.8353	.:.:.:.:.:.:.:.	0/1:198:109,88:109:3882:88:3138:-218.798,0,-246.563	0/1:34:18,16:18:648:16:572:-41.2266,0,-39.9559	0/1:194:94,100:94:3376:100:3579:-261.784,0,-205.299	0/1:80:34,46:34:1224:46:1645:-122.682,0,-75.8677	0/1:77:39,38:39:1391:38:1364:-99.2358,0,-91.7762	0/1:63:24,38:24:860:38:1345:-101.954,0,-53.3491	0/1:93:29,64:29:1040:64:2260:-173.743,0,-51.7556	0/1:135:77,58:77:2764:58:2073:-145.599,0,-180.587	0/1:161:60,101:60:2156:101:3620:-275.257,0,-127.653	0/1:70:29,41:29:1036:41:1438:-107.959,0,-63.8098	0/1:178:70,108:70:2516:108:3884:-294.273,0,-156.937	1/1:5:0,5:0:0:5:180:-16.5205,-1.50515,0	0/1:86:52,34:52:1872:34:1224:-83.958,0,-117.369	0/1:38:29,9:29:1040:9:324:-17.9478,0,-75.9475	0/1:6:3,3:3:108:3:108:-8.17457,0,-6.74653	0/1:66:36,30:36:1277:30:1080:-76.4674,0,-80.4597	0/1:22:4,18:4:144:18:644:-51.1228,0,-5.58373	1/1:4:0,4:0:0:4:140:-12.2174,-1.20412,0	0/1:17:10,7:10:360:7:252:-17.8009,0,-25.1866	0/1:73:13,60:13:468:60:2141:-169.53,0,-15.518	0/1:74:25,49:25:900:49:1755:-135.486,0,-50.3452	1/1:2:0,2:0:0:2:72:-6.8237,-0.60206,0	0/1:162:61,101:61:2192:101:3594:-273.306,0,-134.359	0/1:206:75,131:75:2684:131:4691:-358.317,0,-157.448	0/1:62:17,45:17:582:45:1616:-125.966,0,-27.4194	0/1:46:28,18:28:1004:18:644:-44.2671,0,-69.0755	0/1:92:40,52:40:1409:52:1860:-138.952,0,-86.0431	0/1:129:65,64:65:2320:64:2289:-165.766,0,-150.88	0/1:8:3,5:3:108:5:180:-14.0896,0,-6.51711	0/1:58:25,33:25:892:33:1184:-88.4858,0,-50.4018	0/1:79:30,49:30:1050:49:1739:-132.262,0,-60.3496	0/1:9:6,3:6:216:3:108:-7.34671,0,-15.2113	0/1:107:63,44:63:2256:44:1557:-106.409,0,-140.457	0/1:89:58,31:58:2080:31:1112:-71.9248,0,-130.273	0/1:106:51,55:51:1824:55:1972:-144.462,0,-111.833	0/1:121:45,76:45:1616:76:2724:-207.331,0,-96.1424	0/1:108:61,47:61:2192:47:1688:-116.744,0,-133.329	0/1:75:35,40:35:1260:40:1440:-105.373,0,-72.9352	0/1:7:2,5:2:72:5:180:-14.3551,0,-3.69641	0/1:85:35,50:35:1237:50:1800:-134.888,0,-72.4673	0/1:58:27,31:27:968:31:1111:-80.4934,0,-55.8406	0/1:253:124,129:124:4456:129:4598:-334.53,0,-288.306	0/1:104:17,87:17:597:87:3119:-248.428,0,-16.9913	0/1:43:31,12:31:1112:12:432:-26.0778,0,-76.8376	0/1:70:26,44:26:932:44:1572:-118.705,0,-56.013	0/1:129:41,88:41:1472:88:3160:-244.221,0,-81.4681	0/1:30:15,15:15:540:15:536:-39.2783,0,-32.5108	0/1:83:34,49:34:1224:49:1752:-131.813,0,-69.0096	0/1:74:41,33:41:1461:33:1188:-84.248,0,-85.1699	0/1:27:17,10:17:612:10:360:-24.4881,0,-40.841	0/1:59:25,34:25:900:34:1224:-92.3325,0,-53.0802	0/1:30:13,17:13:464:17:608:-45.9014,0,-29.1504	0/1:194:111,83:111:3958:83:2972:-206.726,0,-265.908	0/1:130:56,74:56:2012:74:2656:-198.899,0,-123.779
chr05	3964359	.	T	C	58669	PASS	AB=0.395367;ABP=975.913;AC=93;AF=0.494681;AN=188;AO=4048;CIGAR=1X;DP=10246;DPB=10246;DPRA=110.161;EPP=8793.13;EPPR=13435.7;GTI=8;LEN=1;MEANALT=1.07527;MQM=50.73;MQMR=46.2795;NS=94;NUMALT=1;ODDS=2.22162;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142659;QR=220660;RO=6190;RPL=4048;RPP=8793.13;RPPR=13435.7;RPR=0;RUN=1;SAF=4048;SAP=8793.13;SAR=0;SRF=6190;SRP=13444.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:30,21:30:1072:21:718:-48.7376,0,-69.7597	0/1:117:41,76:41:1445:76:2693:-205.458,0,-83.8645	0/1:145:112,33:112:3992:33:1171:-61.2345,0,-285.075	0/1:183:121,62:121:4308:62:2193:-141.707,0,-315.761	0/1:45:29,16:29:1044:16:572:-38.0955,0,-73.7209	0/1:35:21,14:21:756:14:504:-34.9143,0,-50.56	0/1:167:82,85:82:2903:85:3004:-218.977,0,-199.746	0/1:193:128,65:128:4568:65:2297:-147.694,0,-318.336	0/1:75:33,42:33:1188:42:1477:-109.362,0,-71.257	0/1:162:118,44:118:4226:44:1560:-91.5855,0,-316.07	0/1:38:29,9:29:1036:9:315:-17.1973,0,-76.754	0/1:94:47,47:47:1688:47:1668:-119.709,0,-108.657	0/1:52:35,17:35:1234:17:597:-37.7069,0,-85.837	0/1:74:51,23:51:1815:23:811:-50.8096,0,-129.026	0/1:66:36,30:36:1281:30:1040:-72.8328,0,-88.6879	0/1:58:39,19:39:1383:19:661:-41.7866,0,-94.772	0/1:98:39,59:39:1388:59:2049:-154.193,0,-87.212	0/1:21:8,13:8:288:13:462:-35.2942,0,-17.9611	0/1:51:19,32:19:665:32:1125:-85.2265,0,-37.7649	0/1:183:97,86:97:3399:86:3053:-219.126,0,-238.669	0/1:180:142,37:142:5059:37:1290:-61.4836,0,-368.161	0/1:119:67,52:67:2404:52:1857:-130.375,0,-175.356	0/1:101:56,44:56:2004:44:1552:-109.228,0,-141.14	0/1:94:58,36:58:2071:36:1279:-86.5753,0,-146.547	0/1:101:58,43:58:2061:43:1514:-104.961,0,-139.723	0/1:277:170,107:170:6061:107:3756:-252.892,0,-447.945	0/1:203:128,75:128:4556:75:2664:-175.685,0,-324.245	0/1:70:44,26:44:1572:26:900:-59.2193,0,-107.802	0/1:314:251,63:251:8990:63:2198:-103.212,0,-685.136	0/1:106:61,45:61:2177:45:1603:-109.212,0,-151.419	0/1:143:110,33:110:3925:33:1148:-59.9142,0,-293.867	0/1:3:1,2:1:36:2:72:-5.91123,0,-2.69518	0/1:14:7,7:7:239:7:237:-17.2298,0,-16.7699	0/1:7:6,1:6:212:1:32:-1.01383,0,-15.7721	0/1:2:1,1:1:36:1:36:-2.97671,0,-2.99621	0/0:12:11,1:11:396:1:36:0,-0.033593,-28.4495	0/1:256:172,84:172:6159:84:2954:-187.92,0,-459.561	0/1:156:23,132:23:824:132:4653:-369.105,0,-18.9606	0/1:68:34,34:34:1207:34:1207:-87.4588,0,-76.6585	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:297:209,88:209:7445:88:3115:-186.897,0,-539.712	0/1:45:30,15:30:1068:15:531:-34.2433,0,-74.8051	0/1:254:155,99:155:5548:99:3502:-236.75,0,-385.204	0/1:108:62,46:62:2215:46:1606:-111.025,0,-157.572	0/1:103:67,36:67:2387:36:1284:-84.418,0,-174.379	0/1:110:71,39:71:2525:39:1388:-91.7982,0,-189.391	0/1:113:50,63:50:1777:63:2214:-163.36,0,-113.072	0/1:182:124,58:124:4424:58:2042:-128.669,0,-317.078	0/1:204:102,101:102:3634:101:3595:-260.318,0,-249.012	0/1:92:51,41:51:1809:41:1434:-101.163,0,-126.331	0/1:220:110,110:110:3911:110:3905:-283.771,0,-271.434	0/1:6:1,5:1:36:5:180:-14.7144,0,-1.79209	0/1:147:113,34:113:4037:34:1220:-65.2454,0,-294.773	0/1:56:47,9:47:1676:9:324:-12.5292,0,-127.765	0/1:11:7,4:7:252:4:140:-9.53237,0,-18.7234	0/1:84:54,30:54:1918:30:1065:-69.7057,0,-133.339	0/1:31:12,19:12:428:19:672:-50.6574,0,-28.4396	0/1:5:2,3:2:72:3:108:-8.55964,0,-5.33157	0/1:26:18,8:18:644:8:275:-16.7947,0,-48.0356	0/1:94:40,54:40:1407:54:1915:-143.3,0,-94.3553	0/1:93:46,47:46:1656:47:1633:-118.839,0,-111.998	1/1:2:0,2:0:0:2:72:-6.8237,-0.60206,0	0/1:228:128,100:128:4576:100:3499:-245.107,0,-329.713	0/1:250:120,130:120:4303:130:4603:-337.704,0,-290.6	0/1:78:36,42:36:1274:42:1482:-109.281,0,-83.9937	0/1:78:60,18:60:2132:18:644:-34.5649,0,-160.52	0/1:117:66,51:66:2344:51:1768:-123.725,0,-165.308	0/1:180:116,64:116:4120:64:2261:-148.61,0,-298.956	0/1:8:3,5:3:104:5:176:-13.729,0,-6.33048	0/1:90:57,33:57:2036:33:1164:-77.0706,0,-143.713	0/1:96:49,47:49:1735:47:1615:-115.52,0,-117.891	0/1:15:12,3:12:423:3:108:-5.54053,0,-32.262	0/1:137:93,44:93:3324:44:1537:-96.031,0,-229.025	0/1:130:100,29:100:3563:29:1013:-51.7974,0,-252.961	0/1:171:118,51:118:4196:51:1820:-111.562,0,-306.931	0/1:167:90,77:90:3224:77:2732:-194.308,0,-227.242	0/1:132:87,45:87:3072:45:1583:-101.108,0,-206.594	0/1:108:68,40:68:2422:40:1424:-94.5384,0,-169.008	0/1:12:7,5:7:252:5:180:-12.85,0,-18.4223	0/1:111:63,48:63:2259:48:1704:-118.79,0,-156.25	0/1:102:71,31:71:2544:31:1070:-64.5085,0,-184.858	0/1:355:228,126:228:8174:126:4418:-289.451,0,-592.956	0/1:118:34,84:34:1188:84:2950:-229.09,0,-66.6258	0/1:62:50,12:50:1784:12:424:-19.6409,0,-132.279	0/1:85:42,43:42:1495:43:1477:-106.464,0,-102.374	0/1:163:75,88:75:2668:88:3104:-228.494,0,-179.15	0/1:37:24,13:24:860:13:464:-30.7289,0,-59.3942	0/1:91:45,46:45:1616:46:1620:-117.631,0,-102.044	0/1:102:69,33:69:2467:33:1137:-71.3418,0,-167.409	0/1:40:31,9:31:1097:9:316:-16.6397,0,-80.7911	0/1:69:35,34:35:1252:34:1199:-87.1047,0,-81.9269	0/1:43:26,17:26:932:17:604:-41.633,0,-67.9773	0/1:293:211,82:211:7496:82:2892:-170.619,0,-556.351	0/1:160:89,71:89:3155:71:2493:-175.44,0,-218.331
chr05	3964360	.	G	A	99720.7	PASS	AB=0.606332;ABP=1011.11;AC=95;AF=0.505319;AN=188;AO=6236;CIGAR=1X;DP=10280;DPB=10280;DPRA=55.2581;EPP=13535.6;EPPR=8771.42;GTI=10;LEN=1;MEANALT=1.06452;MQM=46.3061;MQMR=50.6724;NS=94;NUMALT=1;ODDS=0.675726;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222578;QR=142983;RO=4038;RPL=6235;RPP=13535.6;RPPR=8771.42;RPR=1;RUN=1;SAF=6236;SAP=13544.3;SAR=0;SRF=4038;SRP=8771.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:19,30:19:665:30:1080:-71.5737,0,-44.8089	0/1:116:77,39:77:2727:39:1387:-80.235,0,-208.296	0/1:144:31,113:31:1116:113:4064:-289.796,0,-56.5829	0/1:179:59,120:59:2094:120:4269:-314.349,0,-134.027	0/1:45:19,26:19:676:26:932:-64.4045,0,-47.0645	0/1:35:14,21:14:504:21:756:-50.56,0,-34.9143	0/1:172:87,85:87:3071:85:3025:-208.115,0,-223.735	0/1:193:63,130:63:2231:130:4645:-326.063,0,-141.425	0/1:75:42,33:42:1490:33:1184:-71.1531,0,-110.517	0/1:164:43,121:43:1505:121:4292:-321.742,0,-85.9075	0/1:38:9,29:9:320:29:1020:-75.4715,0,-17.6508	0/1:94:45,49:45:1574:49:1756:-114.285,0,-111.338	0/1:52:19,33:19:656:33:1180:-80.867,0,-43.0923	0/1:73:25,48:25:884:48:1712:-121.627,0,-56.3972	0/1:64:26,38:26:919:38:1356:-96.8107,0,-61.8744	0/1:58:17,39:17:604:39:1396:-95.4083,0,-37.1704	0/1:98:58,40:58:2021:40:1427:-90.5617,0,-151.729	0/1:21:13,8:13:468:8:288:-17.9611,0,-35.6539	0/1:51:32,19:32:1128:19:675:-39.0197,0,-85.5911	0/1:182:87,95:87:3111:95:3383:-237.231,0,-224.336	0/1:184:36,147:36:1271:147:5209:-379.274,0,-58.3782	0/1:116:48,68:48:1724:68:2428:-178.232,0,-119.568	0/1:100:44,56:44:1559:56:1991:-140.062,0,-110.13	0/1:94:39,55:39:1358:55:1968:-138.748,0,-92.3138	0/1:100:40,60:40:1406:60:2144:-147.383,0,-95.5792	0/1:278:106,172:106:3739:172:6141:-455.019,0,-250.935	0/1:202:75,127:75:2652:127:4524:-320.97,0,-175.059	0/1:70:28,42:28:983:42:1497:-102.682,0,-65.5942	0/1:319:63,256:63:2239:256:9163:-696.818,0,-105.371	0/1:107:41,66:41:1463:66:2343:-164.595,0,-97.6136	0/1:145:32,112:32:1124:112:3987:-300.41,0,-56.61	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.91123	0/1:15:8,7:8:288:7:252:-17.6551,0,-20.6263	0/1:7:3,4:3:108:4:144:-10.2005,0,-7.24633	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.97671	1/1:12:1,11:1:36:11:396:-28.4495,-0.0335932,0	0/1:254:84,170:84:2960:170:6067:-454.441,0,-188.2	0/1:153:131,22:131:4669:22:775:-15.6798,0,-370.498	0/1:67:34,33:34:1211:33:1176:-74.0574,0,-87.887	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:299:84,215:84:3008:215:7670:-557.873,0,-176.769	0/1:44:16,28:16:576:28:995:-69.826,0,-37.2997	0/1:257:95,162:95:3379:162:5792:-403.825,0,-225.309	0/1:109:47,62:47:1660:62:2203:-156.131,0,-115.456	0/1:106:38,68:38:1342:68:2436:-177.111,0,-88.5724	0/1:108:38,70:38:1355:70:2512:-188.366,0,-89.4122	0/1:114:63,51:63:2221:51:1832:-117.111,0,-163.231	0/1:183:57,126:57:1994:126:4516:-324.039,0,-124.071	0/1:203:97,106:97:3425:106:3799:-263.103,0,-245.322	0/1:93:41,52:41:1472:52:1860:-130.89,0,-104.062	0/1:223:106,117:106:3766:117:4146:-290.631,0,-270.347	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7144	0/1:146:34,112:34:1201:112:3993:-291.612,0,-63.8672	0/1:57:9,48:9:324:48:1720:-131.636,0,-12.2282	0/1:10:2,8:2:72:8:288:-21.7686,0,-3.78936	0/1:84:29,55:29:1044:55:1968:-137.419,0,-68.1284	0/1:31:19,12:19:676:12:421:-27.805,0,-51.0149	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.55964	0/1:26:9,17:9:320:17:612:-45.2441,0,-20.8877	0/1:93:58,35:58:2072:35:1244:-79.3283,0,-157.565	0/1:92:50,42:50:1788:42:1508:-101.176,0,-131.012	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.8237	0/1:228:97,131:97:3480:131:4684:-339.414,0,-243.231	0/1:253:126,127:126:4480:127:4525:-309.205,0,-325.935	0/1:81:43,38:43:1532:38:1341:-88.8068,0,-112.908	0/1:80:18,62:18:648:62:2204:-166.814,0,-34.3204	0/1:121:51,70:51:1782:70:2498:-175.983,0,-123.125	0/1:181:63,118:63:2256:118:4220:-306.161,0,-147.152	0/1:7:4,3:4:144:3:108:-6.81814,0,-11.1628	0/1:89:32,57:32:1127:57:2030:-143.474,0,-74.0981	0/1:95:55,39:55:1940:39:1392:-92.1722,0,-140.204	0/1:15:3,12:3:108:12:428:-32.6307,0,-5.54053	0/1:140:44,96:44:1572:96:3415:-235.895,0,-97.8262	0/1:134:30,104:30:1045:104:3718:-265.022,0,-53.1614	0/1:176:57,118:57:2019:118:4211:-306.876,0,-127.413	0/1:167:77,90:77:2755:90:3228:-227.323,0,-196.088	0/1:132:46,86:46:1629:86:3060:-205.522,0,-104.275	0/1:110:41,69:41:1468:69:2464:-171.395,0,-97.3769	0/1:13:4,9:4:144:9:324:-24.6017,0,-9.32805	0/1:111:49,62:49:1764:62:2200:-152.412,0,-123.84	0/1:101:30,71:30:1042:71:2552:-186.196,0,-61.8792	0/1:355:128,227:128:4550:227:8088:-585.469,0,-300.337	0/1:118:87,31:87:3054:31:1108:-58.6499,0,-238.497	0/1:63:14,49:14:492:49:1760:-130.612,0,-23.8881	0/1:84:42,42:42:1476:42:1503:-103.26,0,-106.594	0/1:164:89,75:89:3092:75:2679:-180.127,0,-228.056	0/1:37:15,22:15:521:22:792:-53.09,0,-35.8361	0/1:91:49,42:49:1678:42:1503:-92.0917,0,-122.96	0/1:101:33,68:33:1145:68:2425:-166.034,0,-70.0658	0/1:37:6,31:6:203:31:1103:-82.016,0,-7.39996	0/1:72:34,38:34:1194:38:1357:-90.0591,0,-85.7535	0/1:45:17,28:17:599:28:1008:-73.452,0,-40.584	0/1:295:81,214:81:2855:214:7645:-567.468,0,-166.586	0/1:161:70,91:70:2472:91:3242:-224.535,0,-173.207
chr05	4218064	.	G	C	201270	PASS	AB=0.39751;ABP=589.22;AC=141;AF=0.75;AN=188;AO=7686;CIGAR=1X;DP=11637;DPB=11637;DPRA=125.118;EPP=99.3665;EPPR=118.918;GTI=7;LEN=1;MEANALT=1.03226;MQM=59.8098;MQMR=59.9351;NS=94;NUMALT=1;ODDS=0.034223;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273773;QR=141092;RO=3947;RPL=7686;RPP=16692.9;RPPR=8392.38;RPR=0;RUN=1;SAF=4135;SAP=99.3665;SAR=3551;SRF=1723;SRP=141.1;SRR=2224;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:57,24:57:2044:24:860:-53.3384,0,-159.802	1/1:63:1,62:1:32:62:2215:-196.411,-15.7656,0	0/1:246:180,66:180:6426:66:2363:-138.871,0,-504.33	1/1:238:2,236:2:72:236:8442:-752.921,-64.8084,0	1/1:122:1,121:1:36:121:4311:-384.558,-33.1274,0	1/1:51:0,51:0:0:51:1828:-164.731,-15.3525,0	0/1:165:101,64:101:3601:64:2270:-154.873,0,-274.618	1/1:98:1,96:1:36:96:3405:-303.062,-25.9615,0	0/1:183:127,56:127:4560:56:1983:-123.652,0,-355.473	1/1:112:0,112:0:0:112:3993:-359.528,-33.7154,0	1/1:62:0,62:0:0:62:2190:-197.357,-18.6639,0	1/1:87:0,87:0:0:87:3111:-280.215,-26.1896,0	0/1:103:86,17:86:3043:17:608:-24.0459,0,-243.048	1/1:88:0,88:0:0:88:3130:-281.926,-26.4906,0	1/1:86:1,85:1:36:85:3033:-269.57,-22.2903,0	1/1:78:0,78:0:0:78:2791:-251.43,-23.4803,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:28:0,28:0:0:28:1004:-90.6309,-8.42884,0	1/1:36:0,36:0:0:36:1288:-116.216,-10.8371,0	0/1:274:140,134:140:5011:134:4794:-349.039,0,-368.626	0/1:338:161,177:161:5752:177:6330:-467.991,0,-416.047	0/1:69:43,26:43:1536:26:917:-62.0735,0,-117.762	0/1:200:113,87:113:4044:87:3112:-220.094,0,-303.939	1/1:201:8,193:8:288:193:6892:-594.066,-34.2396,0	1/1:109:0,109:0:0:109:3882:-349.564,-32.8123,0	1/1:351:2,349:2:72:349:12443:-1112.85,-98.8248,0	0/1:490:230,260:230:8206:260:9273:-686.856,0,-591.046	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	0/1:331:166,165:166:5934:165:5900:-431.361,0,-434.527	0/1:118:49,69:49:1760:69:2472:-187.203,0,-123.161	0/1:159:74,85:74:2636:85:2960:-218.764,0,-189.621	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	1/1:31:0,31:0:0:31:1069:-96.5082,-9.33193,0	0/1:4:1,3:1:36:3:104:-8.49831,0,-2.39415	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:26:8,18:8:288:18:636:-49.7405,0,-18.4406	1/1:173:1,172:1:36:172:6101:-545.583,-48.4799,0	1/1:119:1,118:1:36:118:4217:-375.996,-32.2243,0	1/1:29:0,29:0:0:29:1036:-93.5071,-8.72987,0	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	1/1:158:5,153:5:180:153:5413:-470.702,-31.0107,0	0/1:47:37,10:37:1305:10:330:-15.8689,0,-103.601	0/1:285:142,143:142:5075:143:5110:-374.198,0,-371.101	0/1:142:113,29:113:4027:29:1031:-50.3564,0,-319.868	1/1:64:1,63:1:36:63:2239:-198.166,-15.6676,0	0/1:127:73,54:73:2593:54:1906:-133.582,0,-195.384	1/1:60:0,60:0:0:60:2136:-192.506,-18.0618,0	0/1:297:158,139:158:5647:139:4927:-354.174,0,-418.945	1/1:121:1,120:1:36:120:4258:-379.8,-32.8264,0	1/1:168:0,168:0:0:168:6013:-541.2,-50.573,0	1/1:192:1,191:1:36:191:6824:-610.626,-54.1995,0	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	1/1:116:0,116:0:0:116:4092:-368.397,-34.9195,0	1/1:70:0,70:0:0:70:2463:-221.785,-21.0721,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:224:123,101:123:4397:101:3603:-256.976,0,-328.471	1/1:77:0,77:0:0:77:2743:-247.106,-23.1793,0	0/1:10:2,8:2:72:8:282:-22.7108,0,-3.82642	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/1:148:83,65:83:2968:65:2314:-163.954,0,-222.745	0/1:153:110,43:110:3926:43:1516:-90.6663,0,-307.475	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:254:153,101:153:5475:101:3601:-247.818,0,-416.414	0/1:119:57,62:57:2036:62:2201:-162.529,0,-147.69	0/1:120:56,64:56:1998:64:2276:-168.976,0,-143.969	1/1:279:2,277:2:72:277:9891:-883.192,-77.1506,0	0/1:246:180,66:180:6445:66:2355:-138.155,0,-506.078	0/1:58:38,20:38:1368:20:720:-47.6644,0,-105.961	1/1:72:0,72:0:0:72:2535:-228.399,-21.6742,0	0/1:124:80,44:80:2858:44:1584:-105.524,0,-220.121	0/1:24:16,8:16:572:8:284:-18.6763,0,-44.5887	1/1:61:0,61:0:0:61:2159:-194.57,-18.3628,0	1/1:38:0,38:0:0:38:1364:-122.989,-11.4391,0	1/1:295:0,294:0:0:294:10487:-943.138,-88.5028,0	1/1:171:0,169:0:0:169:6059:-545.044,-50.8741,0	0/1:151:114,37:114:4076:37:1315:-73.1946,0,-321.527	1/1:26:1,25:1:36:25:881:-76.0067,-4.22851,0	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	1/1:230:1,229:1:36:229:8171:-731.673,-65.6386,0	0/1:91:69,22:69:2468:22:788:-43.8511,0,-194.874	1/1:367:4,363:4:144:363:12914:-1148.67,-97.1644,0	0/1:141:100,41:100:3587:41:1461:-89.3365,0,-280.398	0/1:157:107,50:107:3835:50:1776:-112.852,0,-298.082	1/1:105:0,105:0:0:105:3748:-337.516,-31.6082,0	0/1:249:169,80:169:6051:80:2876:-184.11,0,-469.736	0/0:45:41,4:41:1464:4:140:0,-0.601772,-119.111	1/1:44:0,44:0:0:44:1564:-141.047,-13.2453,0	1/1:61:0,61:0:0:61:2151:-193.848,-18.3628,0	1/1:53:0,53:0:0:53:1884:-169.827,-15.9546,0	0/1:112:80,32:80:2868:32:1137:-68.9216,0,-224.597	0/1:293:243,50:243:8696:50:1796:-73.7205,0,-694.389	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:86:0,86:0:0:86:3060:-275.618,-25.8886,0
chr05	4276150	.	A	G	164568	PASS	AB=0.49988;ABP=3.01082;AC=142;AF=0.755319;AN=188;AO=7705;CIGAR=1X;DP=9801;DPB=9801;DPRA=16.3679;EPP=16725.5;EPPR=4541.39;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9896;MQMR=59.9962;NS=94;NUMALT=1;ODDS=0.362402;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=274810;QR=74757;RO=2094;RPL=0;RPP=16734.2;RPPR=4541.39;RPR=7705;RUN=1;SAF=7704;SAP=16725.5;SAR=1;SRF=2094;SRP=4550.07;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	1/1:128:0,128:0:0:128:4556:-410.206,-38.5318,0	0/1:141:73,67:73:2582:67:2404:-174.112,0,-190.115	1/1:120:0,120:0:0:120:4279:-385.287,-36.1236,0	1/1:74:1,73:1:36:73:2608:-231.37,-18.6779,0	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	0/1:153:78,75:78:2784:75:2662:-193.766,0,-204.744	1/1:132:0,132:0:0:132:4690:-422.26,-39.736,0	0/1:75:38,37:38:1360:37:1320:-96.5247,0,-100.123	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	1/1:98:0,98:0:0:98:3491:-314.402,-29.5009,0	1/1:82:0,82:0:0:82:2931:-264.024,-24.6845,0	0/1:67:28,39:28:996:39:1388:-105.05,0,-69.7859	1/1:126:0,126:0:0:126:4472:-402.65,-37.9298,0	1/1:64:0,64:0:0:64:2285:-205.91,-19.2659,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:97:0,97:0:0:97:3469:-312.333,-29.1999,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:47:0,47:0:0:47:1683:-151.756,-14.1484,0	0/1:240:130,110:130:4656:110:3929:-281.554,0,-346.955	1/1:135:0,135:0:0:135:4799:-432.066,-40.6391,0	0/1:98:60,38:60:2152:38:1352:-92.4794,0,-164.446	0/1:63:31,32:31:1112:32:1148:-84.6649,0,-81.4265	1/1:111:0,111:0:0:111:3947:-355.419,-33.4143,0	1/1:72:0,72:0:0:72:2539:-228.758,-21.6742,0	1/1:297:0,297:0:0:297:10616:-955.349,-89.4059,0	0/1:232:103,129:103:3658:129:4573:-341.895,0,-259.584	1/1:30:0,30:0:0:30:1076:-97.1482,-9.0309,0	0/1:329:149,180:149:5313:180:6403:-477.32,0,-379.266	0/1:156:84,72:84:3000:72:2573:-184.859,0,-223.271	1/1:161:0,161:0:0:161:5728:-515.625,-48.4658,0	0/1:11:2,9:2:72:9:309:-24.8294,0,-3.52539	1/1:20:0,20:0:0:20:703:-63.5935,-6.0206,0	0/1:6:4,2:4:144:2:63:-4.17697,0,-11.5074	1/1:26:0,26:0:0:26:921:-83.2052,-7.82678,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:171:0,171:0:0:171:6123:-551.169,-51.4761,0	1/1:293:0,293:0:0:293:10380:-934.125,-88.2018,0	1/1:89:0,89:0:0:89:3179:-286.333,-26.7917,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:129:1,128:1:36:128:4581:-408.855,-35.2346,0	0/1:38:23,15:23:824:15:536:-37.1357,0,-63.0442	0/1:131:63,67:63:2234:67:2408:-177.482,0,-161.827	0/1:73:39,34:39:1400:34:1205:-86.7787,0,-104.324	1/1:65:0,65:0:0:65:2298:-207.075,-19.567,0	0/1:125:64,61:64:2273:61:2184:-159.197,0,-167.202	1/1:115:0,115:0:0:115:4097:-368.915,-34.6185,0	0/1:206:94,112:94:3364:112:3950:-293.679,0,-240.964	1/1:134:0,134:0:0:134:4768:-429.277,-40.338,0	1/1:133:0,133:0:0:133:4772:-429.636,-40.037,0	1/1:116:0,116:0:0:116:4152:-373.863,-34.9195,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:152:1,151:1:36:151:5401:-482.621,-42.1583,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/1:157:68,89:68:2428:89:3184:-239.522,0,-171.514	1/1:45:0,45:0:0:45:1586:-143.026,-13.5464,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:97:34,63:34:1220:63:2246:-173.201,0,-80.9069	0/1:163:87,76:87:3124:76:2732:-197.054,0,-232.318	0/1:6:5,1:5:180:1:32:-1.39313,0,-14.7459	1/1:209:0,209:0:0:209:7466:-671.982,-62.9153,0	0/1:228:103,125:103:3669:125:4450:-332.035,0,-261.778	0/1:44:22,22:22:788:22:777:-57.0059,0,-57.9995	0/1:88:39,49:39:1396:49:1743:-130.664,0,-99.4485	1/1:171:1,170:1:36:170:6096:-545.142,-47.8779,0	0/1:113:81,32:81:2904:32:1152:-69.9738,0,-227.579	0/1:75:38,37:38:1368:37:1332:-97.6051,0,-100.844	1/1:77:0,77:0:0:77:2733:-246.21,-23.1793,0	0/1:77:42,35:42:1500:35:1260:-90.5262,0,-112.115	0/1:28:21,7:21:741:7:252:-14.6001,0,-58.5828	1/1:106:0,106:0:0:106:3760:-338.601,-31.9092,0	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:196:0,196:0:0:196:6989:-629.073,-59.0019,0	1/1:195:0,195:0:0:195:6959:-626.37,-58.7009,0	0/1:110:56,54:56:1989:54:1925:-140.412,0,-146.169	1/1:121:0,121:0:0:121:4311:-388.167,-36.4246,0	0/1:19:11,8:11:377:8:288:-20.5478,0,-28.5384	1/1:126:0,126:0:0:126:4470:-402.449,-37.9298,0	0/1:129:71,58:71:2514:58:2070:-147.737,0,-187.677	1/1:230:0,230:0:0:230:8209:-738.824,-69.2369,0	0/1:106:52,54:52:1860:54:1932:-142.247,0,-135.77	0/1:91:44,47:44:1569:47:1688:-124.813,0,-114.106	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	0/1:144:60,84:60:2156:84:2978:-224.903,0,-150.959	0/1:33:21,12:21:756:12:432:-29.2872,0,-58.4332	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:77:0,77:0:0:77:2749:-247.651,-23.1793,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:190:98,92:98:3505:92:3248:-235.345,0,-258.463	0/1:56:38,18:38:1353:18:648:-41.7942,0,-105.211	1/1:119:0,119:0:0:119:4242:-381.957,-35.8226,0	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0
chr05	4411154	.	G	A	136372	PASS	AB=0.450142;ABP=86.8081;AC=144;AF=0.765957;AN=188;AO=6498;CIGAR=1X;DP=8660;DPB=8660;DPRA=18.6129;EPP=14095.9;EPPR=4686.88;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9617;MQMR=59.9491;NS=94;NUMALT=1;ODDS=0.190976;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=230738;QR=76419;RO=2161;RPL=0;RPP=14113.2;RPPR=4695.56;RPR=6498;RUN=1;SAF=2;SAP=14095.9;SAR=6496;SRF=1;SRP=4686.88;SRR=2160;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:12,2:12:428:2:72:-2.6223,0,-34.6444	1/1:120:1,119:1:36:119:4195:-374.134,-32.5253,0	0/1:96:48,48:48:1700:48:1724:-126.547,0,-124.384	1/1:177:1,176:1:36:176:6272:-560.971,-49.684,0	1/1:49:1,48:1:36:48:1715:-151.037,-11.1522,0	1/1:52:0,52:0:0:52:1855:-167.098,-15.6536,0	0/1:127:58,69:58:2075:69:2444:-181.981,0,-148.789	1/1:101:0,101:0:0:101:3579:-322.317,-30.404,0	0/1:102:54,48:54:1920:48:1716:-124.021,0,-142.372	1/1:98:1,97:1:36:97:3476:-309.453,-25.9027,0	1/1:61:1,60:1:36:60:2128:-188.191,-14.7646,0	1/1:86:0,86:0:0:86:3050:-274.73,-25.8886,0	0/1:72:41,31:41:1464:31:1099:-77.5453,0,-110.382	1/1:58:4,54:4:140:54:1910:-159.228,-4.51516,0	1/1:93:0,93:0:0:93:3305:-297.665,-27.9958,0	1/1:62:0,62:0:0:62:2196:-197.905,-18.6639,0	1/1:88:0,88:0:0:88:3102:-279.41,-26.4906,0	1/1:72:0,72:0:0:72:2528:-227.771,-21.6742,0	1/1:69:1,68:1:36:68:2337:-206.801,-17.1728,0	0/1:120:52,68:52:1843:68:2428:-182.652,0,-130.024	1/1:87:2,85:2:72:85:3027:-265.822,-19.3529,0	0/1:250:178,72:178:6257:72:2546:-154.133,0,-487.603	0/1:41:17,24:17:593:24:844:-63.9343,0,-41.2635	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	1/1:60:0,60:0:0:60:2143:-193.137,-18.0618,0	1/1:290:0,290:0:0:290:10352:-931.605,-87.2987,0	0/1:229:117,112:117:4126:112:3970:-288.555,0,-302.587	1/1:36:0,36:0:0:36:1271:-114.692,-10.8371,0	0/1:259:166,93:166:5913:93:3296:-218.891,0,-454.314	0/1:151:64,87:64:2261:87:3072:-231.253,0,-158.296	1/1:104:0,104:0:0:104:3722:-335.182,-31.3071,0	0/1:18:4,14:4:144:14:500:-39.9176,0,-7.89508	1/1:11:0,11:0:0:11:386:-35.0758,-3.31133,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	0/1:9:4,5:4:140:5:176:-13.4757,0,-10.2353	1/1:250:0,250:0:0:250:8869:-798.202,-75.2575,0	1/1:255:1,254:1:36:254:8960:-802.79,-73.1644,0	1/1:78:0,78:0:0:78:2756:-248.282,-23.4803,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:107:1,106:1:36:106:3746:-333.743,-28.6119,0	0/1:68:27,41:27:959:41:1455:-110.771,0,-66.1554	0/1:72:29,43:29:1036:43:1536:-116.859,0,-71.8798	0/1:106:51,55:51:1789:55:1948:-143.684,0,-129.381	1/1:93:1,92:1:36:92:3209:-285.439,-24.3975,0	0/1:60:38,22:38:1319:22:784:-52.8221,0,-100.936	1/1:149:0,149:0:0:149:5305:-477.572,-44.8535,0	0/1:161:105,56:105:3737:56:1988:-130.729,0,-288.063	1/1:82:0,82:0:0:82:2921:-263.114,-24.6845,0	1/1:116:1,115:1:36:115:4107:-366.215,-31.3212,0	1/1:55:0,55:0:0:55:1933:-174.236,-16.5567,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:117:0,117:0:0:117:4182:-376.561,-35.2205,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	0/1:29:14,15:14:496:15:518:-38.2157,0,-36.2444	0/1:97:57,40:57:2030:40:1432:-99.9768,0,-153.769	1/1:46:0,46:0:0:46:1633:-147.257,-13.8474,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:41:19,22:19:666:22:784:-58.5417,0,-47.9214	0/1:111:63,48:63:2231:48:1698:-119.69,0,-167.64	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:152:0,152:0:0:152:5417:-487.645,-45.7566,0	0/1:182:89,93:89:3149:93:3327:-244.86,0,-228.849	0/1:37:20,17:20:716:17:604:-43.5525,0,-53.6296	0/1:66:40,26:40:1427:26:932:-64.3309,0,-108.859	1/1:83:0,83:0:0:83:2943:-265.105,-24.9855,0	0/1:292:240,52:240:8437:52:1863:-80.048,0,-671.433	0/1:27:10,17:10:351:17:604:-46.5628,0,-23.7989	0/1:51:29,22:29:1019:22:792:-56.2531,0,-76.6688	0/1:107:59,48:59:2086:48:1681:-119.364,0,-155.799	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:164:0,164:0:0:164:5786:-520.835,-49.3689,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:86:0,86:0:0:86:3039:-273.74,-25.8886,0	1/1:142:0,142:0:0:142:5086:-457.883,-42.7463,0	0/1:122:59,63:59:2103:63:2238:-164.913,0,-152.813	1/1:111:0,111:0:0:111:3967:-357.221,-33.4143,0	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	1/1:104:0,104:0:0:104:3700:-333.202,-31.3071,0	0/1:124:61,63:61:2134:63:2256:-165.975,0,-154.998	1/1:131:2,129:2:68:129:4614:-408.966,-32.9772,0	0/1:123:57,65:57:2023:65:2312:-171.255,0,-145.243	0/1:47:19,28:19:664:28:996:-75.8065,0,-45.9223	1/1:105:1,104:1:36:104:3687:-328.436,-28.0099,0	0/1:166:69,97:69:2415:97:3398:-256.066,0,-167.632	0/1:61:24,37:24:845:37:1315:-100.28,0,-58.0043	1/1:102:0,102:0:0:102:3613:-325.376,-30.7051,0	1/1:81:1,80:1:36:80:2864:-254.399,-20.7852,0	1/1:34:1,33:1:36:33:1175:-102.459,-6.63675,0	0/1:97:57,40:57:2014:40:1427:-99.5269,0,-152.332	0/1:104:59,45:59:2081:45:1592:-112.262,0,-156.252	1/1:75:0,75:0:0:75:2663:-239.915,-22.5773,0	1/1:130:2,128:2:72:128:4543:-402.2,-32.2972,0
chr05	4411194	.	AAT	GAT,GAC	190264	PASS	AB=0.443607,0.555137;ABP=112.975,108.132;AC=144,44;AF=0.765957,0.234043;AN=188;AO=6585,2232;CIGAR=1X2M,1X1M1X;DP=8831;DPB=8832;DPRA=18.9806,1.12384;EPP=14284.8,4849.74;EPPR=5.18177;GTI=2;LEN=1,3;MEANALT=1.75269,2.12069;MQM=59.9503,59.8938;MQMR=60;NS=94;NUMALT=2;ODDS=0.791842;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=0;PRO=1;QA=235277,78903;QR=36;RO=1;RPL=6585,2232;RPP=14302.2,4849.74;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=2,0;SAP=14284.8,4849.74;SAR=6583,2232;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:15:0,3,12:0:0:3,12:104,409:-41.9769,-33.5225,-32.6194,-8.79971,0,-5.18735	1/1:120:0,119,1:0:0:119,1:4227,36:-380.249,-35.8226,0,-377.312,-32.5253,-377.011	1/2:98:0,49,49:0:0:49,49:1745,1758:-285.978,-143.754,-129.003,-142.582,0,-127.831	1/1:180:0,179,1:0:0:179,1:6403,36:-575.992,-53.8844,0,-573.054,-50.5871,-572.753	1/1:48:0,46,1:0:0:46,1:1656,36:-149.04,-13.8474,0,-146.103,-10.835,-145.802	1/1:52:0,52,0:0:0:52,0:1868,0:-168.267,-15.6536,0,-168.267,-15.6536,-168.267	1/2:132:0,72,60:0:0:72,60:2565,2129:-382.883,-173.816,-152.142,-209.422,0,-191.361	1/1:99:1,98,0:1:36:98,0:3486,0:-310.353,-26.2037,0,-310.654,-29.5009,-313.592	1/2:106:0,50,56:0:0:50,56:1788,1984:-307.772,-161.977,-146.925,-146.151,0,-129.293	1/1:97:0,95,1:0:0:95,1:3404,36:-306.215,-28.5979,0,-303.277,-25.6604,-302.976	1/1:62:0,61,1:0:0:61,1:2179,36:-196.016,-18.3628,0,-193.078,-15.0656,-192.777	1/1:85:0,85,0:0:0:85,0:3051,0:-274.818,-25.5876,0,-274.818,-25.5876,-274.818	1/2:75:0,32,42:0:0:32,42:1134,1480:-212.891,-120.509,-110.876,-92.3952,0,-79.752	1/1:59:0,59,0:0:0:59,0:2107,0:-189.895,-17.7608,0,-189.895,-17.7608,-189.895	1/1:92:0,92,0:0:0:92,0:3282,0:-295.586,-27.6948,0,-295.586,-27.6948,-295.586	1/1:63:0,62,1:0:0:62,1:2215,36:-199.254,-18.6639,0,-196.317,-15.3666,-196.016	1/1:88:0,88,0:0:0:88,0:3143,0:-283.095,-26.4906,0,-283.095,-26.4906,-283.095	1/1:73:0,73,0:0:0:73,0:2602,0:-234.428,-21.9752,0,-234.428,-21.9752,-234.428	1/1:72:0,71,0:0:0:71,0:2523,0:-227.024,-21.3731,0,-227.024,-21.3731,-227.024	1/2:121:0,67,52:0:0:67,52:2390,1831:-343.98,-149.145,-128.976,-194.92,0,-179.266	1/1:91:0,89,2:0:0:89,2:3179,72:-285.957,-26.7917,0,-280.082,-20.557,-279.48	1/2:254:0,68,186:0:0:68,186:2428,6571:-732.682,-534.731,-514.261,-198.306,0,-142.314	1/2:43:0,24,19:0:0:24,19:860,669:-124.89,-54.7493,-47.5246,-70.4948,0,-64.7752	1/1:56:0,56,0:0:0:56,0:2000,0:-180.274,-16.8577,0,-180.274,-16.8577,-180.274	1/1:61:0,61,0:0:0:61,0:2174,0:-195.925,-18.3628,0,-195.925,-18.3628,-195.925	1/1:299:0,299,0:0:0:299,0:10650,0:-958.413,-90.008,0,-958.413,-90.008,-958.413	1/2:236:0,113,122:0:0:113,122:4039,4276:-677.331,-348.003,-313.987,-329.391,0,-292.665	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/2:266:0,95,171:0:0:95,171:3384,6075:-771.2,-495.378,-466.781,-276.177,0,-224.701	1/2:159:0,89,70:0:0:89,70:3183,2456:-459.703,-200.157,-173.365,-259.834,0,-238.762	1/1:107:0,107,0:0:0:107,0:3824,0:-343.859,-32.2102,0,-343.859,-32.2102,-343.859	1/2:18:0,14,4:0:0:14,4:495,144:-52.4197,-12.1095,-7.89508,-40.6686,0,-39.4645	1/1:11:0,11,0:0:0:11,0:388,0:-35.2574,-3.31133,0,-35.2574,-3.31133,-35.2574	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:9:0,5,4:0:0:5,4:180,125:-25.0679,-10.3545,-8.84935,-15.0469,0,-13.8428	1/1:250:0,250,0:0:0:250,0:8932,0:-803.861,-75.2575,0,-803.861,-75.2575,-803.861	1/1:261:0,260,1:0:0:260,1:9284,36:-835.162,-78.2678,0,-832.224,-74.9706,-831.923	1/1:83:0,83,0:0:0:83,0:2980,0:-268.432,-24.9855,0,-268.432,-24.9855,-268.432	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:108:0,106,1:0:0:106,1:3808,36:-342.527,-31.9092,0,-339.59,-29.0019,-339.289	1/2:70:0,43,27:0:0:43,27:1544,967:-205.142,-79.2196,-66.2753,-126.28,0,-118.153	1/2:73:0,42,31:0:0:42,31:1496,1080:-210.114,-88.1745,-75.5313,-122.291,0,-112.959	1/2:109:0,57,52:0:0:57,52:2043,1847:-317.482,-150.856,-133.697,-166.982,0,-151.329	1/1:97:0,97,0:0:0:97,0:3448,0:-310.535,-29.1999,0,-310.535,-29.1999,-310.535	1/2:62:0,22,40:0:0:22,40:792,1395:-178.429,-113.801,-107.179,-64.983,0,-52.9418	1/1:148:0,148,0:0:0:148,0:5287,0:-475.952,-44.5524,0,-475.952,-44.5524,-475.952	1/2:162:0,55,107:0:0:55,107:1963,3810:-470.915,-310.883,-294.327,-160.388,0,-128.178	1/1:85:0,84,0:0:0:84,0:3012,0:-270.94,-25.2865,0,-270.94,-25.2865,-270.94	1/1:118:0,117,1:0:0:117,1:4176,36:-375.661,-35.2205,0,-372.724,-31.9233,-372.423	1/1:55:0,55,0:0:0:55,0:1964,0:-176.965,-16.5567,0,-176.965,-16.5567,-176.965	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/1:121:0,121,0:0:0:121,0:4341,0:-390.864,-36.4246,0,-390.864,-36.4246,-390.864	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/2:28:0,13,15:0:0:13,15:464,517:-80.1729,-42.3398,-38.4264,-38.1841,0,-33.6687	1/2:100:0,41,59:0:0:41,59:1463,2072:-288.25,-168.983,-156.641,-119.622,0,-101.861	1/1:47:0,47,0:0:0:47,0:1679,0:-151.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chr05	4461057	.	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chr05	4574885	.	ACTG	GCTA,ACTA	160766	PASS	AB=0.443329,0.551358;ABP=97.5193,80.6295;AC=142,44;AF=0.763441,0.236559;AN=186;AO=5563,1880;CIGAR=1X2M1X,3M1X;DP=7481;DPB=7481;DPRA=27.0942,1.08031;EPP=11935.7,3998.98;EPPR=0;GTI=2;LEN=4,1;MEANALT=1.94565,2.37255;MQM=59.9263,59.9989;MQMR=0;NS=93;NUMALT=2;ODDS=0.678362;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=196585,67239;QR=0;RO=0;RPL=5546,1870;RPP=11935.7,3998.98;RPPR=0;RPR=17,10;RUN=1,1;SAF=0,0;SAP=12082.9,4085.38;SAR=5563,1880;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:11:0,5,6:0:0:5,6:180,212:-32.3087,-17.6186,-16.1135,-15.0469,0,-13.2407	1/1:77:0,76,0:0:0:76,0:2691,0:-242.154,-22.8783,0,-242.154,-22.8783,-242.154	1/2:133:0,48,84:0:0:48,84:1720,2994:-384.473,-244.193,-229.744,-140.423,0,-115.137	1/1:180:0,179,1:0:0:179,1:6335,36:-569.888,-53.8844,0,-566.951,-50.5871,-566.65	1/1:46:0,44,2:0:0:44,2:1564,72:-140.692,-13.2453,0,-134.817,-7.01066,-134.215	1/1:40:0,39,0:0:0:39,0:1374,0:-123.655,-11.7402,0,-123.655,-11.7402,-123.655	1/2:140:0,74,66:0:0:74,66:2616,2350:-404.945,-191.89,-169.614,-213.409,0,-193.542	1/1:98:0,97,1:0:0:97,1:3415,36:-307.205,-29.1999,0,-304.268,-25.9027,-303.967	1/2:47:0,25,22:0:0:25,22:883,775:-135.358,-63.4484,-55.9227,-72.2622,0,-65.6396	1/1:49:0,49,0:0:0:49,0:1736,0:-156.524,-14.7505,0,-156.524,-14.7505,-156.524	1/1:64:0,63,1:0:0:63,1:2259,36:-203.214,-18.9649,0,-200.276,-15.6676,-199.975	1/1:87:0,87,0:0:0:87,0:3067,0:-276.253,-26.1896,0,-276.253,-26.1896,-276.253	1/2:78:0,40,38:0:0:40,38:1415,1368:-226.672,-111.982,-99.9405,-115.047,0,-103.608	1/1:63:0,63,0:0:0:63,0:2239,0:-201.774,-18.9649,0,-201.774,-18.9649,-201.774	1/1:63:0,62,0:0:0:62,0:2189,0:-196.998,-18.6639,0,-196.998,-18.6639,-196.998	1/1:61:0,61,0:0:0:61,0:2170,0:-195.562,-18.3628,0,-195.562,-18.3628,-195.562	1/1:61:0,60,0:0:0:60,0:2117,0:-190.517,-18.0618,0,-190.517,-18.0618,-190.517	1/1:56:0,56,0:0:0:56,0:1992,0:-179.554,-16.8577,0,-179.554,-16.8577,-179.554	1/1:44:0,44,0:0:0:44,0:1556,0:-140.33,-13.2453,0,-140.33,-13.2453,-140.33	1/2:215:0,109,104:0:0:109,104:3848,3732:-617.864,-304.511,-271.699,-313.446,0,-282.139	1/1:115:0,115,0:0:0:115,0:4016,0:-361.625,-34.6185,0,-361.625,-34.6185,-361.625	1/2:89:0,24,65:0:0:24,65:850,2336:-260.172,-190.932,-183.708,-69.5949,0,-50.028	1/2:85:0,50,34:0:0:50,34:1752,1216:-241.707,-99.1518,-84.1003,-142.55,0,-132.315	1/1:58:0,58,0:0:0:58,0:2063,0:-185.941,-17.4597,0,-185.941,-17.4597,-185.941	1/1:56:0,55,0:0:0:55,0:1960,0:-176.316,-16.5567,0,-176.316,-16.5567,-176.316	1/1:219:0,217,0:0:0:217,0:7613,0:-684.871,-65.3235,0,-684.871,-65.3235,-684.871	1/2:95:0,34,61:0:0:34,61:1205,2184:-276.628,-178.463,-168.228,-98.5204,0,-80.1576	1/1:46:0,46,0:0:0:46,0:1649,0:-148.699,-13.8474,0,-148.699,-13.8474,-148.699	1/2:225:0,91,132:0:0:91,132:3261,4713:-650.227,-384.268,-356.874,-265.991,0,-226.255	1/2:114:0,47,67:0:0:47,67:1682,2387:-332.08,-194.918,-180.77,-137.519,0,-117.35	1/1:78:0,77,1:0:0:77,1:2721,36:-244.774,-23.1793,0,-241.836,-19.8821,-241.535	1/1:5:0,5,0:0:0:5,0:173,0:-15.9096,-1.50515,0,-15.9096,-1.50515,-15.9096	1/1:16:0,15,0:0:0:15,0:538,0:-48.4054,-4.51545,0,-48.4054,-4.51545,-48.4054	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:175:0,174,0:0:0:174,0:6144,0:-552.706,-52.3792,0,-552.706,-52.3792,-552.706	1/1:173:0,172,1:0:0:172,1:6039,36:-543.196,-51.7772,0,-540.258,-48.4799,-539.957	1/1:59:0,58,0:0:0:58,0:2053,0:-184.806,-17.4597,0,-184.806,-17.4597,-184.806	1/1:4:0,4,0:0:0:4,0:135,0:-12.483,-1.20412,0,-12.483,-1.20412,-12.483	1/2:102:0,46,55:0:0:46,55:1639,1957:-293.082,-159.487,-145.64,-133.591,0,-117.034	1/2:65:0,34,31:0:0:34,31:1207,1116:-189.763,-91.4198,-81.1847,-98.7006,0,-89.3687	1/2:56:0,31,25:0:0:31,25:1106,887:-162.786,-72.6224,-63.2904,-90.519,0,-82.9932	1/2:70:0,25,45:0:0:25,45:877,1616:-203.549,-132.184,-124.658,-71.7187,0,-58.1723	1/1:66:0,66,0:0:0:66,0:2358,0:-212.479,-19.868,0,-212.479,-19.868,-212.479	1/2:67:0,41,26:0:0:41,26:1457,917:-193.747,-75.0178,-62.6756,-119.083,0,-111.256	1/1:88:0,86,1:0:0:86,1:3054,36:-274.765,-25.8886,0,-271.828,-22.9162,-271.527	1/2:155:0,77,77:0:0:77,77:2701,2763:-445.231,-225.43,-202.251,-219.854,0,-196.675	1/1:84:0,84,0:0:0:84,0:2966,0:-267.176,-25.2865,0,-267.176,-25.2865,-267.176	1/1:92:0,92,0:0:0:92,0:3242,0:-292.001,-27.6948,0,-292.001,-27.6948,-292.001	1/1:69:0,69,0:0:0:69,0:2462,0:-221.834,-20.7711,0,-221.834,-20.7711,-221.834	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:127:0,125,0:0:0:125,0:4431,0:-398.603,-37.6288,0,-398.603,-37.6288,-398.603	1/1:52:0,52,0:0:0:52,0:1841,0:-165.962,-15.6536,0,-165.962,-15.6536,-165.962	1/2:16:0,3,13:0:0:3,13:108,462:-46.8159,-38.0028,-37.0997,-9.17208,0,-5.25869	1/2:101:0,41,59:0:0:41,59:1430,2090:-286.571,-170.306,-157.964,-116.315,0,-98.5541	1/1:37:0,37,0:0:0:37,0:1308,0:-118.021,-11.1381,0,-118.021,-11.1381,-118.021	1/2:10:0,3,7:0:0:3,7:106,252:-29.5526,-20.9217,-20.0187,-8.98607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chr05	4575808	.	A	G	126527	PASS	AB=0.489992;ABP=5.18351;AC=140;AF=0.752688;AN=186;AO=4686;CIGAR=1X;DP=5969;DPB=5969;DPRA=64.8696;EPP=37.2942;EPPR=3.012;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.9479;MQMR=59.7229;NS=93;NUMALT=1;ODDS=0.0796201;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165365;QR=45358;RO=1281;RPL=4;RPP=10143.8;RPPR=2741.41;RPR=4682;RUN=1;SAF=2211;SAP=35.3071;SAR=2475;SRF=645;SRP=3.14761;SRR=636;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8038	1/1:87:0,87:0:0:87:3083:-277.7,-26.1896,0	0/1:111:55,56:55:1972:56:1991:-146.039,0,-144.234	1/1:76:0,76:0:0:76:2700:-243.245,-22.8783,0	1/1:26:2,24:2:72:24:845:-69.5361,-0.994905,0	1/1:22:0,22:0:0:22:772:-69.7936,-6.62266,0	0/1:72:36,36:36:1275:36:1288:-94.5494,0,-93.3734	1/1:88:0,88:0:0:88:3093:-278.567,-26.4906,0	0/1:59:32,27:32:1132:27:956:-68.5945,0,-84.4115	1/1:75:0,75:0:0:75:2642:-238.007,-22.5773,0	1/1:102:1,101:1:36:101:3539:-315.124,-27.1068,0	1/1:99:0,99:0:0:99:3507:-315.843,-29.802,0	0/1:84:40,44:40:1416:44:1564:-115.765,0,-102.427	1/1:117:0,117:0:0:117:4100:-369.182,-35.2205,0	1/1:99:0,99:0:0:99:3475:-312.964,-29.802,0	1/1:76:0,76:0:0:76:2683:-241.709,-22.8783,0	1/1:82:0,82:0:0:82:2924:-263.396,-24.6845,0	1/1:53:0,53:0:0:53:1871:-168.668,-15.9546,0	1/1:44:0,44:0:0:44:1571:-141.681,-13.2453,0	0/1:57:28,28:28:982:28:979:-71.2034,0,-71.4721	1/1:62:0,62:0:0:62:2146:-193.404,-18.6639,0	0/1:15:12,3:12:428:3:108:-5.55972,0,-34.3434	0/1:28:15,13:15:540:13:464:-33.6687,0,-40.5053	1/1:43:0,43:0:0:43:1527:-137.722,-12.9443,0	1/1:23:0,23:0:0:23:819:-74.0316,-6.92369,0	1/1:158:1,157:1:36:157:5559:-496.839,-43.9645,0	0/1:122:67,55:67:2362:55:1946:-138.671,0,-176.1	1/1:46:0,46:0:0:46:1619:-145.991,-13.8474,0	0/1:119:72,47:72:2568:47:1677:-115.393,0,-195.546	0/1:63:36,27:36:1277:27:953:-67.12,0,-96.1509	1/1:55:0,55:0:0:55:1908:-171.995,-16.5567,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:186:0,186:0:0:186:6560:-590.459,-55.9916,0	1/1:45:0,45:0:0:45:1588:-143.21,-13.5464,0	1/1:108:0,107:0:0:107:3812:-342.92,-32.2102,0	.:.:.:.:.:.:.:.	0/1:101:55,46:55:1952:46:1620:-115.682,0,-145.535	0/1:49:31,18:31:1063:18:640:-43.1788,0,-81.2138	0/1:45:16,29:16:576:29:1040:-80.368,0,-38.6204	0/1:84:52,32:52:1848:32:1114:-75.2792,0,-141.308	1/1:71:0,71:0:0:71:2480:-223.442,-21.3731,0	0/1:43:25,18:25:892:18:640:-44.9817,0,-67.5983	1/1:58:0,58:0:0:58:2035:-183.335,-17.4597,0	0/1:64:28,36:28:1000:36:1280:-96.2372,0,-71.0402	1/1:42:0,42:0:0:42:1462:-131.871,-12.6433,0	1/1:75:0,75:0:0:75:2648:-238.566,-22.5773,0	1/1:64:1,63:1:36:63:2189:-193.675,-15.6676,0	0/1:3:2,1:2:57:1:36:-2.69518,0,-4.51022	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:20:0,20:0:0:20:697:-63.0507,-6.0206,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:56:30,26:30:1063:26:898:-64.2746,0,-79.1231	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:12:6,6:6:212:6:207:-15.3545,0,-15.8124	0/1:43:22,21:22:780:21:730:-53.0743,0,-57.5769	0/1:123:51,72:51:1802:72:2506:-188.762,0,-125.427	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:91:1,90:1:36:90:3182:-282.69,-23.7955,0	0/1:96:49,47:49:1725:47:1656:-120.427,0,-126.623	0/1:58:23,35:23:807:35:1244:-94.8049,0,-55.3594	0/1:45:15,30:15:540:30:1052:-81.4422,0,-35.3878	1/1:92:0,92:0:0:92:3253:-292.992,-27.6948,0	0/1:56:31,25:31:1095:25:892:-63.742,0,-81.9991	0/1:51:20,31:20:677:31:1073:-81.5185,0,-45.7837	0/1:49:26,23:26:928:23:809:-58.3786,0,-69.0878	0/1:109:63,46:63:2243:46:1621:-113.365,0,-169.321	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	1/1:52:0,52:0:0:52:1836:-165.519,-15.6536,0	1/1:70:0,70:0:0:70:2490:-224.345,-21.0721,0	1/1:110:0,110:0:0:110:3832:-345.081,-33.1133,0	1/1:87:0,87:0:0:87:3099:-279.138,-26.1896,0	0/1:51:23,28:23:824:28:988:-73.8814,0,-59.1262	1/1:92:0,92:0:0:92:3222:-290.202,-27.6948,0	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	1/1:84:0,84:0:0:84:2973:-267.803,-25.2865,0	0/1:68:27,41:27:968:41:1458:-111.044,0,-66.9673	1/1:76:1,75:1:36:75:2656:-235.687,-19.28,0	0/1:94:37,57:37:1291:57:2036:-155.215,0,-88.1043	0/1:90:44,46:44:1551:46:1609:-118.002,0,-112.784	1/1:97:0,97:0:0:97:3427:-308.644,-29.1999,0	0/1:109:53,56:53:1852:56:1950:-142.96,0,-134.138	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	1/1:89:0,89:0:0:89:3147:-283.458,-26.7917,0	1/1:85:0,85:0:0:85:3018:-271.853,-25.5876,0	1/1:76:0,76:0:0:76:2678:-241.249,-22.8783,0	0/1:91:49,42:49:1734:42:1488:-106.818,0,-128.941	0/1:81:49,32:49:1734:32:1119:-76.6319,0,-131.955	1/1:53:0,53:0:0:53:1883:-169.748,-15.9546,0	1/1:111:0,111:0:0:111:3936:-354.426,-33.4143,0
chr05	4669921	.	GAACGGT	GAATGGT,AAATGGT	163547	PASS	AB=0.394373,0.593862;ABP=381.922,302.216;AC=140,48;AF=0.744681,0.255319;AN=188;AO=5308,2346;CIGAR=3M1X3M,1X2M1X3M;DP=7744;DPB=7744;DPRA=10.5,1.15786;EPP=11520.5,5097.28;EPPR=5.18177;GTI=3;LEN=1,7;MEANALT=2.32609,2.78431;MQM=59.9898,59.9297;MQMR=60;NS=94;NUMALT=2;ODDS=0.526498;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0;PQA=0,0;PQR=0;PRO=0.333333;QA=189713,82818;QR=31;RO=1;RPL=5308,2346;RPP=11529.2,5097.28;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=1,0;SAP=11520.5,5097.28;SAR=5307,2346;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:47:0,9,38:0:0:9,38:324,1332:-135.178,-108.74,-106.03,-26.7966,0,-15.3574	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/2:172:0,55,114:0:0:55,114:1980,4044:-491.072,-329.512,-312.955,-161.596,0,-127.278	1/1:226:0,222,0:0:0:222,0:7924,0:-712.868,-66.8287,0,-712.868,-66.8287,-712.868	1/1:60:0,59,0:0:0:59,0:2070,0:-186.293,-17.7608,0,-186.293,-17.7608,-186.293	1/1:39:0,39,0:0:0:39,0:1400,0:-126.299,-11.7402,0,-126.299,-11.7402,-126.299	1/2:49:0,21,28:0:0:21,28:756,986:-142.299,-80.6102,-74.2886,-62.0456,0,-53.6168	1/1:109:0,104,4:0:0:104,4:3698,138:-332.667,-31.3071,0,-321.456,-20.1083,-320.252	1/2:87:0,45,41:0:0:45,41:1605,1437:-247.813,-116.974,-103.428,-130.891,0,-118.548	1/1:49:0,49,0:0:0:49,0:1741,0:-156.972,-14.7505,0,-156.972,-14.7505,-156.972	1/1:43:0,43,0:0:0:43,0:1540,0:-138.891,-12.9443,0,-138.891,-12.9443,-138.891	1/1:89:0,87,0:0:0:87,0:3113,0:-280.04,-26.1896,0,-280.04,-26.1896,-280.04	1/2:78:0,38,40:0:0:38,40:1340,1428:-225.88,-116.777,-105.338,-109.458,0,-97.4169	1/1:36:0,35,0:0:0:35,0:1256,0:-112.995,-10.5361,0,-112.995,-10.5361,-112.995	1/1:71:0,71,0:0:0:71,0:2548,0:-229.57,-21.3731,0,-229.57,-21.3731,-229.57	1/1:40:0,40,0:0:0:40,0:1432,0:-129.178,-12.0412,0,-129.178,-12.0412,-129.178	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:43:0,43,0:0:0:43,0:1533,0:-138.26,-12.9443,0,-138.26,-12.9443,-138.26	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/2:212:0,106,97:0:0:106,97:3789,3470:-591.915,-282.974,-251.065,-308.96,0,-279.76	1/1:127:0,127,0:0:0:127,0:4548,0:-409.486,-38.2308,0,-409.486,-38.2308,-409.486	1/2:162:0,39,121:0:0:39,121:1400,4270:-461.9,-347.698,-335.958,-114.199,0,-77.7746	1/2:93:0,48,45:0:0:48,45:1716,1574:-268.325,-128.402,-113.953,-140.276,0,-126.73	1/1:50:0,47,0:0:0:47,0:1680,0:-151.149,-14.1484,0,-151.149,-14.1484,-151.149	1/1:53:0,51,0:0:0:51,0:1836,0:-165.257,-15.3525,0,-165.257,-15.3525,-165.257	1/1:177:0,176,0:0:0:176,0:6247,0:-562.075,-52.9813,0,-562.075,-52.9813,-562.075	1/2:158:0,75,82:0:0:75,82:2680,2896:-454.415,-235.902,-213.324,-218.577,0,-193.893	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/2:374:0,127,244:0:0:127,244:4526,8630:-1071.6,-702.68,-664.449,-368.974,0,-295.522	1/2:181:0,61,116:0:0:61,116:2188,4124:-514.598,-336.132,-317.769,-178.526,0,-143.607	1/1:100:0,100,0:0:0:100,0:3580,0:-322.321,-30.103,0,-322.321,-30.103,-322.321	1/2:27:0,5,22:0:0:5,22:180,784:-78.9489,-64.2612,-62.756,-15.0469,0,-8.42425	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	2/2:11:0,0,11:0:0:0,11:0,382:-34.7124,-34.7124,-34.7124,-3.31133,-3.31133,0	1/1:24:0,22,0:0:0:22,0:791,0:-71.1649,-6.62266,0,-71.1649,-6.62266,-71.1649	1/2:43:0,5,38:0:0:5,38:180,1342:-124.327,-109.639,-108.134,-15.0469,0,-3.60777	1/1:176:0,176,0:0:0:176,0:6311,0:-568.08,-52.9813,0,-568.08,-52.9813,-568.08	1/1:104:0,102,1:0:0:102,1:3645,35:-327.937,-30.7051,0,-325.09,-27.8224,-324.789	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/2:202:0,73,125:0:0:73,125:2616,4424:-573.737,-360.38,-338.405,-213.387,0,-175.758	1/2:34:0,22,12:0:0:22,12:792,432:-100.232,-35.6088,-28.9862,-64.983,0,-61.3707	1/2:126:0,35,90:0:0:35,90:1241,3176:-359.793,-258.69,-248.154,-101.174,0,-74.0817	1/2:52:0,27,24:0:0:27,24:972,856:-149.108,-69.7955,-61.6677,-79.3295,0,-72.1048	1/1:55:0,50,0:0:0:50,0:1792,0:-161.261,-15.0515,0,-161.261,-15.0515,-161.261	1/2:91:0,50,40:0:0:50,40:1796,1388:-259.33,-112.812,-97.7606,-146.511,0,-134.47	1/1:107:0,104,1:0:0:104,1:3724,36:-335.027,-31.3071,0,-332.09,-28.3564,-331.789	1/2:201:0,90,110:0:0:90,110:3209,3883:-577.818,-316.233,-289.14,-261.619,0,-228.506	1/1:114:0,112,0:0:0:112,0:3983,0:-358.346,-33.7154,0,-358.346,-33.7154,-358.346	1/1:76:0,75,0:0:0:75,0:2692,0:-242.293,-22.5773,0,-242.293,-22.5773,-242.293	1/1:105:0,105,0:0:0:105,0:3768,0:-339.318,-31.6082,0,-339.318,-31.6082,-339.318	1/2:17:0,10,7:0:0:10,7:356,244:-49.2114,-20.1919,-17.1816,-29.3709,0,-27.2637	1/1:108:0,107,0:0:0:107,0:3829,0:-344.564,-32.2102,0,-344.564,-32.2102,-344.564	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/2:145:0,61,84:0:0:61,84:2192,2930:-417.472,-238.645,-220.282,-179.183,0,-153.896	1/1:37:0,35,0:0:0:35,0:1256,0:-113.023,-10.5361,0,-113.023,-10.5361,-113.023	1/2:24:0,13,11:0:0:13,11:468,394:-70.6777,-32.4902,-28.5769,-38.5463,0,-35.2349	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/2:47:0,22,25:0:0:22,25:788,872:-135.537,-71.2689,-64.6462,-64.6221,0,-57.0964	1/2:87:1,42,43:1:31:42,43:1503,1535:-244.976,-122.713,-112.557,-120.135,0,-109.678	1/2:8:0,3,5:0:0:3,5:108,180:-23.8592,-15.0469,-14.1438,-9.17208,0,-7.66693	1/1:155:0,155,0:0:0:155,0:5503,0:-495.396,-46.6597,0,-495.396,-46.6597,-495.396	1/2:145:0,53,90:0:0:53,90:1892,3150:-410.608,-256.358,-240.403,-154.326,0,-127.233	1/2:49:0,26,23:0:0:26,23:909,811:-140.332,-66.3865,-58.5598,-74.2966,0,-67.3729	1/2:142:0,40,102:0:0:40,102:1421,3581:-407.586,-291.796,-279.755,-116.144,0,-85.4392	1/1:92:0,91,0:0:0:91,0:3268,0:-294.039,-27.3937,0,-294.039,-27.3937,-294.039	1/2:163:0,34,127:0:0:34,127:1220,4489:-465.13,-365.615,-355.38,-99.5781,0,-61.3473	1/2:32:0,17,13:0:0:17,13:612,466:-87.9659,-38.0274,-32.9098,-49.9584,0,-46.045	1/2:35:0,22,12:0:0:22,12:788,432:-99.5896,-35.3227,-28.7001,-64.3388,0,-60.7264	1/2:26:0,13,13:0:0:13,13:464,467:-76.282,-38.4558,-34.5424,-38.1841,0,-34.2707	1/2:4:0,2,2:0:0:2,2:72,60:-11.001,-5.0962,-4.49414,-6.23466,0,-5.6326	1/1:81:0,81,0:0:0:81,0:2888,0:-260.157,-24.3834,0,-260.157,-24.3834,-260.157	1/1:55:0,52,0:0:0:52,0:1838,0:-165.377,-15.6536,0,-165.377,-15.6536,-165.377	1/1:62:0,62,0:0:0:62,0:2228,0:-200.776,-18.6639,0,-200.776,-18.6639,-200.776	1/1:161:0,157,0:0:0:157,0:5625,0:-506.038,-47.2617,0,-506.038,-47.2617,-506.038	1/2:72:0,36,35:0:0:36,35:1292,1229:-205.506,-100.113,-89.2763,-105.484,0,-94.948	1/1:81:0,80,0:0:0:80,0:2872,0:-258.406,-24.0824,0,-258.406,-24.0824,-258.406	1/2:17:0,7,10:0:0:7,10:237,343:-47.402,-28.1904,-26.0832,-19.5518,0,-16.5415	1/1:124:0,122,1:0:0:122,1:4388,36:-394.766,-36.7257,0,-391.828,-33.7533,-391.527	1/2:89:0,22,67:0:0:22,67:792,2346:-255.855,-191.229,-184.606,-64.983,0,-44.814	1/1:196:0,193,0:0:0:193,0:6892,0:-620.08,-58.0988,0,-620.08,-58.0988,-620.08	1/2:37:0,22,13:0:0:22,13:784,456:-101.018,-37.1095,-30.4869,-63.911,0,-59.9976	1/2:67:0,33,33:0:0:33,33:1184,1181:-192.88,-96.3042,-86.3702,-96.5745,0,-86.6405	1/1:50:0,50,0:0:0:50,0:1788,0:-161.203,-15.0515,0,-161.203,-15.0515,-161.203	1/2:137:0,73,64:0:0:73,64:2612,2243:-395.865,-182.866,-160.891,-213.353,0,-194.087	1/2:23:0,10,13:0:0:10,13:360,467:-67.8303,-38.4558,-35.4455,-29.734,0,-25.8206	1/1:76:0,76,0:0:0:76,0:2702,0:-243.424,-22.8783,0,-243.424,-22.8783,-243.424	1/1:71:0,71,0:0:0:71,0:2548,0:-229.57,-21.3731,0,-229.57,-21.3731,-229.57	1/1:54:0,54,0:0:0:54,0:1940,0:-174.876,-16.2556,0,-174.876,-16.2556,-174.876	1/2:64:0,23,40:0:0:23,40:820,1429:-183.404,-116.561,-109.638,-66.8965,0,-54.8553	1/2:79:0,23,55:0:0:23,55:824,1906:-222.142,-154.937,-148.014,-67.2381,0,-50.6815	1/1:46:0,46,0:0:0:46,0:1618,0:-145.905,-13.8474,0,-145.905,-13.8474,-145.905	1/1:111:0,110,1:0:0:110,1:3910,36:-351.732,-33.1133,0,-348.795,-29.8161,-348.494
chr05	4809497	.	A	G	41748	PASS	AB=0.497576;ABP=3.26298;AC=47;AF=0.25;AN=188;AO=2477;CIGAR=1X;DP=10974;DPB=10974;DPRA=0.968172;EPP=5321.12;EPPR=18287.2;GTI=3;LEN=1;MEANALT=1.01724;MQM=59.5684;MQMR=59.9832;NS=94;NUMALT=1;ODDS=1.09525;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88417;QR=304353;RO=8496;RPL=7;RPP=5321.12;RPPR=18304.5;RPR=2470;RUN=1;SAF=0;SAP=5381.75;SAR=2477;SRF=2;SRP=18434.5;SRR=8494;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:25,26:25:892:26:936:-69.1042,0,-65.2472	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/1:180:96,84:96:3437:84:3008:-216.723,0,-255.356	0/0:250:250,0:250:8947:0:0:0,-75.2575,-805.205	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/1:182:112,70:112:4015:70:2499:-170.37,0,-306.75	0/0:175:175,0:175:6249:0:0:0,-52.6802,-562.497	0/1:148:70,78:70:2493:78:2780:-205.844,0,-180.069	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/0:93:92,1:92:3283:1:36:0,-24.3975,-292.09	0/1:89:45,44:45:1608:44:1569:-114.692,0,-118.218	0/1:99:46,53:46:1652:53:1876:-139.298,0,-119.167	0/0:117:117,0:117:4192:0:0:0,-35.2205,-377.461	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:57:55,2:55:1972:2:72:0,-10.322,-170.918	0/1:218:113,105:113:4034:105:3768:-273.68,0,-297.621	0/0:176:175,1:175:6280:1:36:0,-49.383,-561.693	0/1:129:44,85:44:1584:85:3035:-234.053,0,-104.019	0/1:123:63,60:63:2264:60:2127:-154.414,0,-166.996	0/0:124:124,0:124:4435:0:0:0,-37.3277,-399.321	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/0:352:352,0:352:12591:0:0:0,-105.963,-1132	0/1:217:101,116:101:3616:116:4148:-308.103,0,-260.32	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:332:177,155:177:6344:155:5552:-399.853,0,-471.108	0/1:122:77,45:77:2753:45:1605:-107.985,0,-211.285	0/0:151:150,1:150:5376:1:32:0,-42.2562,-480.772	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/1:25:12,13:12:432:13:464:-34.5718,0,-31.6954	0/0:198:198,0:198:7103:0:0:0,-59.6039,-639.326	0/0:190:190,0:190:6797:0:0:0,-57.1957,-611.801	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:9:7,2:7:252:2:72:-4.12261,0,-20.3197	0/1:251:125,126:125:4484:126:4497:-329.312,0,-328.17	0/1:68:33,35:33:1179:35:1252:-92.5132,0,-85.9472	0/1:85:47,38:47:1680:38:1351:-96.1272,0,-125.9	0/1:112:59,53:59:2124:53:1900:-137.56,0,-157.713	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/1:150:79,70:79:2835:70:2486:-178.729,0,-210.322	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/1:192:91,101:91:3257:101:3620:-268.192,0,-235.551	0/0:163:163,0:163:5864:0:0:0,-49.0679,-527.867	0/0:169:169,0:169:6067:0:0:0,-50.8741,-546.13	0/0:157:157,0:157:5615:0:0:0,-47.2617,-505.472	0/1:14:9,5:9:324:5:171:-11.5086,0,-25.2914	0/0:237:237,0:237:8493:0:0:0,-71.3441,-764.366	0/0:79:79,0:79:2802:0:0:0,-23.7814,-251.641	0/1:26:11,15:11:396:15:536:-40.748,0,-28.156	0/1:165:84,81:84:3016:81:2886:-210.287,0,-222	0/0:133:132,1:132:4724:1:36:0,-36.4387,-421.719	0/1:22:6,16:6:212:16:576:-45.5514,0,-12.8021	0/1:24:17,7:17:612:7:252:-15.8033,0,-48.1887	0/1:72:37,35:37:1328:35:1240:-90.2282,0,-98.1481	0/1:167:91,76:91:3261:76:2707:-193.594,0,-243.436	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:275:275,0:275:9888:0:0:0,-82.7832,-889.855	0/1:250:154,96:154:5498:96:3431:-233.735,0,-419.687	0/1:61:29,32:29:1032:32:1148:-85.1279,0,-74.8306	0/1:124:65,59:65:2336:59:2099:-151.546,0,-173.172	0/0:260:258,2:258:9237:2:72:0,-71.4335,-824.463	0/1:145:49,96:49:1760:96:3448:-266.864,0,-115.035	0/1:50:19,31:19:684:31:1116:-85.7002,0,-46.8388	0/1:55:22,33:22:788:33:1175:-89.5002,0,-54.6881	0/1:95:44,51:44:1569:51:1802:-133.858,0,-112.902	0/1:22:8,14:8:273:14:504:-39.0754,0,-18.2775	0/0:130:130,0:130:4671:0:0:0,-39.1339,-420.549	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:167:166,1:166:5928:1:36:0,-46.6737,-530.028	0/0:189:188,1:188:6768:1:36:0,-53.2964,-605.59	0/1:100:46,54:46:1639:54:1940:-144.748,0,-117.667	0/0:135:135,0:135:4821:0:0:0,-40.639,-434.044	0/1:21:8,13:8:284:13:455:-34.9304,0,-19.5817	0/0:140:138,2:138:4964:2:72:0,-35.3075,-440.069	0/1:122:72,50:72:2584:50:1791:-124.692,0,-196.083	0/0:249:248,1:248:8900:1:36:0,-71.3582,-797.382	0/1:93:52,41:52:1860:41:1443:-102.003,0,-139.684	0/1:84:38,46:38:1368:46:1630:-121.696,0,-98.132	0/0:87:87,0:87:3113:0:0:0,-26.1896,-280.395	0/1:143:70,73:70:2508:73:2585:-189.843,0,-182.925	0/1:37:18,19:18:629:19:684:-50.744,0,-45.7957	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/0:91:91,0:91:3248:0:0:0,-27.3937,-292.539	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/1:165:70,95:70:2520:95:3385:-255.136,0,-177.252	0/1:85:29,56:29:1036:56:2008:-155.403,0,-67.9664	0/0:90:90,0:90:3225:0:0:0,-27.0927,-290.47	0/0:122:121,1:121:4339:1:36:0,-33.1274,-387.086
chr05	4809514	.	ACAG	TCAG,TCAA	237926	PASS	AB=0.500899,0.493709;ABP=3.04543,4.7316;AC=141,47;AF=0.75,0.25;AN=188;AO=8557,2478;CIGAR=1X3M,1X2M1X;DP=11085;DPB=11085.2;DPRA=0,0.903232;EPP=18566.9,5383.92;EPPR=9.52472;GTI=3;LEN=1,4;MEANALT=1.98936,2.48077;MQM=59.9915,59.5545;MQMR=60;NS=94;NUMALT=2;ODDS=1.32405;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=305524,87058;QR=98;RO=3;RPL=8557,2478;RPP=18584.3,5383.92;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=2,0;SAP=18566.9,5383.92;SAR=8555,2478;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:50:0,24,26:0:0:24,26:864,899:-143.864,-73.3595,-66.1348,-70.8578,0,-63.0311	1/1:98:0,98,0:0:0:98,0:3484,0:-313.769,-29.5009,0,-313.769,-29.5009,-313.769	1/2:179:0,95,82:0:0:95,82:3397,2886:-511.9,-234.909,-206.311,-276.991,0,-252.306	1/1:249:0,247,0:0:0:247,0:8824,0:-793.784,-74.3544,0,-793.784,-74.3544,-793.784	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/1:74:0,74,0:0:0:74,0:2645,0:-238.295,-22.2762,0,-238.295,-22.2762,-238.295	1/2:184:0,112,71:0:0:112,71:3976,2485:-526.209,-202.246,-168.531,-324.034,0,-302.661	1/1:176:0,176,0:0:0:176,0:6279,0:-565.196,-52.9813,0,-565.196,-52.9813,-565.196	1/2:147:0,69,78:0:0:69,78:2464,2750:-425.061,-224.172,-203.401,-201.184,0,-177.704	1/1:99:0,99,0:0:0:99,0:3526,0:-317.547,-29.802,0,-317.547,-29.802,-317.547	1/1:92:0,92,0:0:0:92,0:3304,0:-297.573,-27.6948,0,-297.573,-27.6948,-297.573	1/2:90:0,46,44:0:0:46,44:1652,1570:-263.093,-128.33,-114.483,-135.121,0,-121.876	1/2:99:0,45,53:0:0:45,53:1620,1859:-283.445,-151.258,-137.711,-132.184,0,-116.229	1/1:118:0,118,0:0:0:118,0:4213,0:-379.35,-35.5215,0,-379.35,-35.5215,-379.35	1/1:85:0,84,0:0:0:84,0:3016,0:-271.311,-25.2865,0,-271.311,-25.2865,-271.311	1/1:71:0,71,0:0:0:71,0:2545,0:-229.3,-21.3731,0,-229.3,-21.3731,-229.3	1/1:84:0,84,0:0:0:84,0:3019,0:-271.94,-25.2865,0,-271.94,-25.2865,-271.94	1/1:85:0,85,0:0:0:85,0:3046,0:-274.369,-25.5876,0,-274.369,-25.5876,-274.369	1/1:57:0,57,0:0:0:57,0:2038,0:-183.692,-17.1587,0,-183.692,-17.1587,-183.692	1/2:216:0,109,106:0:0:109,106:3905,3757:-624.522,-306.049,-273.237,-318.469,0,-286.56	1/1:177:0,176,0:0:0:176,0:6316,0:-568.24,-52.9813,0,-568.24,-52.9813,-568.24	1/2:131:0,46,85:0:0:46,85:1637,2977:-375.799,-242.383,-228.536,-133.769,0,-108.182	1/2:126:0,64,62:0:0:64,62:2296,2149:-362.163,-174.88,-155.614,-187.635,0,-168.971	1/1:127:0,127,0:0:0:127,0:4545,0:-409.215,-38.2308,0,-409.215,-38.2308,-409.215	1/1:74:0,74,0:0:0:74,0:2656,0:-239.286,-22.2762,0,-239.286,-22.2762,-239.286	1/1:353:1,350,0:1:32:350,0:12452,0:-1117.34,-102.772,0,-1117.64,-105.361,-1120.22	1/2:221:0,104,117:0:0:104,117:3698,4141:-638.891,-337.532,-306.224,-301.714,0,-266.494	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:339:0,182,156:0:0:182,156:6482,5530:-978.925,-450.601,-395.814,-528.418,0,-481.457	1/2:122:0,77,45:0:0:77,45:2768,1596:-356.183,-130.358,-107.178,-226.181,0,-212.635	1/1:155:0,153,0:0:0:153,0:5479,0:-492.956,-46.0576,0,-492.956,-46.0576,-492.956	1/2:11:0,9,2:0:0:9,2:316,72:-31.946,-6.23466,-3.52539,-26.0696,0,-25.4675	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:4:0,3,1:0:0:3,1:104,36:-11.7405,-3.29724,-2.39415,-8.79971,0,-8.49868	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:24:0,11,13:0:0:11,13:396,455:-69.6844,-37.3683,-34.0569,-32.6714,0,-28.758	1/1:203:0,203,0:0:0:203,0:7269,0:-654.259,-61.1091,0,-654.259,-61.1091,-654.259	1/1:193:0,193,0:0:0:193,0:6848,0:-616.39,-58.0988,0,-616.39,-58.0988,-616.39	1/1:99:0,99,0:0:0:99,0:3555,0:-320.157,-29.802,0,-320.157,-29.802,-320.157	1/2:9:0,7,2:0:0:7,2:252,72:-26.7919,-6.22982,-4.12261,-20.9217,0,-20.3197	1/2:254:0,126,126:0:0:126,126:4520,4474:-733.279,-364.598,-326.668,-368.751,0,-330.821	1/2:70:0,32,37:0:0:32,37:1148,1304:-199.8,-106.159,-96.5258,-93.6371,0,-82.499	1/2:88:0,49,39:0:0:49,39:1725,1359:-251.17,-110.738,-95.9872,-140.782,0,-129.042	1/2:115:0,60,54:0:0:60,54:2156,1892:-329.898,-154.007,-135.945,-175.954,0,-159.698	1/1:65:0,65,0:0:0:65,0:2336,0:-210.499,-19.567,0,-210.499,-19.567,-210.499	1/2:151:0,80,70:0:0:80,70:2868,2406:-429.236,-195.311,-171.229,-234.024,0,-212.952	1/1:119:0,119,0:0:0:119,0:4226,0:-380.52,-35.8226,0,-380.52,-35.8226,-380.52	1/2:198:0,93,105:0:0:93,105:3314,3628:-565.236,-295.107,-267.111,-270.48,0,-238.872	1/1:162:0,162,0:0:0:162,0:5795,0:-521.662,-48.7669,0,-521.662,-48.7669,-521.662	1/1:174:0,171,0:0:0:171,0:6064,0:-545.611,-51.4761,0,-545.611,-51.4761,-545.611	1/1:161:0,161,0:0:0:161,0:5773,0:-519.683,-48.4658,0,-519.683,-48.4658,-519.683	1/2:14:0,9,5:0:0:9,5:320,179:-41.029,-14.9529,-12.2436,-26.4331,0,-24.9279	1/1:236:0,234,0:0:0:234,0:8359,0:-751.953,-70.441,0,-751.953,-70.441,-751.953	1/1:81:0,81,0:0:0:81,0:2878,0:-259.254,-24.3834,0,-259.254,-24.3834,-259.254	1/2:28:0,13,15:0:0:13,15:440,517:-78.0066,-42.3402,-38.4268,-36.0076,0,-31.4922	1/2:166:0,85,80:0:0:85,80:3003,2811:-473.325,-228.766,-203.178,-244.552,0,-220.469	1/1:131:0,129,1:0:0:129,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chr05	4835046	.	GCACG	GCACA,ACACA	127201	PASS	AB=0.484586,0.513487;ABP=7.29467,6.29052;AC=145,39;AF=0.788043,0.211957;AN=184;AO=4776,1089;CIGAR=4M1X,1X3M1X;DP=5884;DPB=5884.2;DPRA=26.1289,0.932302;EPP=10374,2367.74;EPPR=0;GTI=1;LEN=1,5;MEANALT=1.73333,2.08163;MQM=59.2452,47.5096;MQMR=0;NS=92;NUMALT=2;ODDS=0.889881;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,32;PQR=0;PRO=0;QA=170493,38212;QR=0;RO=0;RPL=4776,1089;RPP=10374,2367.74;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10374,2367.74;SAR=4776,1089;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:23:0,11,12:0:0:11,12:388,426:-66.2456,-34.6514,-31.3401,-31.946,0,-28.3337	1/1:67:0,67,0:0:0:67,0:2388,0:-215.132,-20.169,0,-215.132,-20.169,-215.132	1/2:64:0,36,27:0:0:36,27:1296,940:-181.432,-75.6854,-64.8483,-105.741,0,-97.6129	1/2:116:0,73,43:0:0:73,43:2603,1510:-333.644,-121.533,-99.5581,-212.461,0,-199.517	1/2:42:0,21,21:0:0:21,21:752,735:-120.802,-59.4691,-53.1475,-61.6846,0,-55.363	1/2:37:0,17,20:0:0:17,20:604,685:-104.87,-55.6459,-50.5284,-49.5731,0,-43.5525	1/1:94:0,94,0:0:0:94,0:3356,0:-302.15,-28.2968,0,-302.15,-28.2968,-302.15	1/1:86:0,84,1:0:0:84,1:2969,36:-266.623,-25.2865,0,-263.703,-22.3667,-263.402	1/1:54:0,52,0:0:0:52,0:1856,0:-166.953,-15.6536,0,-166.953,-15.6536,-166.953	1/1:97:0,97,0:0:0:97,0:3459,0:-311.308,-29.1999,0,-311.308,-29.1999,-311.308	1/1:69:0,68,0:0:0:68,0:2403,0:-216.115,-20.47,0,-216.115,-20.47,-216.115	1/1:73:0,72,1:0:0:72,1:2557,36:-229.557,-21.6742,0,-226.637,-18.3964,-226.336	1/1:50:0,49,0:0:0:49,0:1760,0:-158.082,-14.7505,0,-158.082,-14.7505,-158.082	1/1:70:0,69,0:0:0:69,0:2468,0:-221.637,-20.7711,0,-221.637,-20.7711,-221.637	1/1:59:0,59,0:0:0:59,0:2124,0:-191.047,-17.7608,0,-191.047,-17.7608,-191.047	1/1:51:0,50,0:0:0:50,0:1796,0:-161.564,-15.0515,0,-161.564,-15.0515,-161.564	1/1:100:0,99,0:0:0:99,0:3537,0:-318.143,-29.802,0,-318.143,-29.802,-318.143	1/1:45:0,45,0:0:0:45,0:1607,0:-144.864,-13.5464,0,-144.864,-13.5464,-144.864	1/1:32:0,31,1:0:0:31,1:1112,36:-100.033,-9.33193,0,-97.1136,-6.05419,-96.8126	1/1:90:0,89,1:0:0:89,1:3176,30:-284.067,-26.7917,0,-281.672,-24.097,-281.371	1/1:100:0,100,0:0:0:100,0:3572,0:-321.267,-30.103,0,-321.267,-30.103,-321.267	1/2:61:0,24,37:0:0:24,37:852,1301:-174.476,-105.158,-97.9336,-69.6693,0,-58.5312	1/1:68:0,67,1:0:0:67,1:2391,36:-214.875,-20.169,0,-211.966,-16.9032,-211.665	1/2:85:0,44,41:0:0:44,41:1560,1456:-243.712,-116.655,-103.41,-127.408,0,-115.066	1/1:40:0,40,0:0:0:40,0:1436,0:-129.538,-12.0412,0,-129.538,-12.0412,-129.538	1/1:145:0,145,0:0:0:145,0:5159,0:-464.101,-43.6494,0,-464.101,-43.6494,-464.101	1/2:136:0,60,76:0:0:60,76:2152,2688:-391.577,-216.091,-198.029,-175.84,0,-152.962	1/1:37:0,37,0:0:0:37,0:1328,0:-119.812,-11.1381,0,-119.812,-11.1381,-119.812	1/1:135:0,135,0:0:0:135,0:4818,0:-433.721,-40.6391,0,-433.721,-40.6391,-433.721	1/1:78:0,73,5:0:0:73,5:2612,177:-234.858,-21.9752,0,-220.589,-7.35475,-219.083	1/2:53:0,19,34:0:0:19,34:680,1198:-152.545,-97.0904,-91.3709,-55.8096,0,-45.5746	.:.:.:.:.:.:.:.	1/1:11:0,10,0:0:0:10,0:360,0:-32.5207,-3.0103,0,-32.5207,-3.0103,-32.5207	2/2:2:0,0,2:0:0:0,2:0,69:-6.5246,-6.5246,-6.5246,-0.60206,-0.60206,0	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:4:0,4,0:0:0:4,0:144,0:-13.2956,-1.20412,0,-13.2956,-1.20412,-13.2956	1/1:171:0,170,0:0:0:170,0:6078,0:-546.603,-51.1751,0,-546.603,-51.1751,-546.603	1/2:68:0,31,37:0:0:31,37:1099,1297:-194.578,-105.109,-95.7769,-89.8202,0,-78.6821	1/2:53:0,27,26:0:0:27,26:968,901:-151.478,-72.5356,-64.4078,-79.2919,0,-71.4651	.:.:.:.:.:.:.:.	1/2:78:0,43,35:0:0:43,35:1528,1252:-226.206,-101.715,-88.7708,-124.846,0,-114.31	1/2:35:0,13,22:0:0:13,22:464,791:-102.254,-64.4267,-60.5133,-38.1841,0,-31.5615	1/1:107:0,106,1:0:0:106,1:3771,31:-338.877,-31.9092,0,-336.396,-29.1188,-336.095	1/1:83:0,83,0:0:0:83,0:2951,0:-265.753,-24.9855,0,-265.753,-24.9855,-265.753	1/1:73:0,73,0:0:0:73,0:2620,0:-235.957,-21.9752,0,-235.957,-21.9752,-235.957	1/2:61:0,36,25:0:0:36,25:1264,874:-173.881,-71.0394,-60.2023,-103.19,0,-95.6645	1/2:28:0,13,15:0:0:13,15:464,533:-81.2495,-43.4201,-39.5068,-38.1841,0,-33.6687	1/2:106:0,63,43:0:0:63,43:2260,1505:-305.269,-121.32,-102.356,-184.3,0,-171.356	1/1:68:0,68,0:0:0:68,0:2420,0:-217.673,-20.47,0,-217.673,-20.47,-217.673	1/1:110:0,108,2:0:0:108,2:3863,72:-347.375,-32.5112,0,-341.556,-26.3364,-340.954	1/1:63:0,63,0:0:0:63,0:2236,0:-201.406,-18.9649,0,-201.406,-18.9649,-201.406	2/2:3:0,0,3:0:0:0,3:0,108:-9.98707,-9.98707,-9.98707,-0.90309,-0.90309,0	1/2:68:0,26,42:0:0:26,42:932,1463:-194.663,-118.68,-110.853,-76.3368,0,-63.6936	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7633,-9.0309,0,-96.7633,-9.0309,-96.7633	1/2:10:0,7,3:0:0:7,3:252,108:-29.6807,-9.11746,-7.01025,-20.9217,0,-20.0187	1/1:32:0,31,0:0:0:31,0:1112,0:-100.03,-9.33193,0,-100.03,-9.33193,-100.03	1/2:29:0,10,18:0:0:10,18:351,628:-79.1765,-50.6379,-47.6276,-28.5316,0,-23.1131	1/1:5:0,5,0:0:0:5,0:180,0:-16.5341,-1.50515,0,-16.5341,-1.50515,-16.5341	1/2:16:0,6,10:0:0:6,10:212,338:-44.8091,-27.5582,-25.752,-17.5974,0,-14.5871	1/1:49:0,49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chr05	4934096	.	C	T	38539	PASS	AB=0.522145;ABP=21.2831;AC=48;AF=0.255319;AN=188;AO=2261;CIGAR=1X;DP=10537;DPB=10537;DPRA=0.90193;EPP=4912.71;EPPR=17911.2;GTI=3;LEN=1;MEANALT=1.05882;MQM=59.586;MQMR=59.9941;NS=94;NUMALT=1;ODDS=0.667535;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80993;QR=296681;RO=8271;RPL=0;RPP=4912.71;RPPR=17928.5;RPR=2261;RUN=1;SAF=2261;SAP=4912.71;SAR=0;SRF=8269;SRP=17945.9;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:15,23:15:540:23:828:-63.3789,0,-37.4974	0/0:127:127,0:127:4572:0:0:0,-38.2308,-411.643	0/1:107:50,57:50:1796:57:2019:-149.751,0,-129.712	0/0:220:220,0:220:7888:0:0:0,-66.2266,-709.944	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:150:85,65:85:3044:65:2324:-164.072,0,-229.035	0/0:242:241,1:241:8633:1:36:0,-69.251,-773.364	0/1:124:63,61:63:2264:61:2184:-159.49,0,-166.695	0/0:172:172,0:172:6152:0:0:0,-51.7772,-553.777	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:71:29,42:29:1040:42:1497:-111.441,0,-72.5412	0/1:73:41,32:41:1476:32:1152:-82.015,0,-111.161	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.572	0/0:85:85,0:85:3051:0:0:0,-25.5875,-274.818	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:179:81,98:81:2904:98:3505:-261.642,0,-207.711	0/0:155:155,0:155:5559:0:0:0,-46.6596,-500.432	0/1:98:36,62:36:1296:62:2213:-169.914,0,-87.443	0/1:51:23,28:23:828:28:996:-74.6024,0,-59.4916	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.611	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.931	0/0:464:461,3:461:16509:3:108:0,-129.603,-1475.39	0/1:273:136,137:136:4884:137:4927:-361.374,0,-357.529	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:331:158,172:158:5659:172:6142:-453.323,0,-409.878	0/1:172:99,73:99:3535:73:2614:-183.705,0,-266.582	0/0:126:126,0:126:4512:0:0:0,-37.9298,-406.248	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/0:214:214,0:214:7675:0:0:0,-64.4204,-690.782	0/0:232:232,0:232:8319:0:0:0,-69.839,-748.629	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:136:68,68:68:2444:68:2433:-178.265,0,-179.275	0/1:24:10,14:10:356:14:500:-38.1096,0,-25.1565	0/1:151:77,74:77:2768:74:2641:-192.354,0,-203.905	0/1:91:41,50:41:1476:50:1788:-133.803,0,-105.742	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:89:42,47:42:1508:47:1679:-124.599,0,-109.223	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:239:117,121:117:4195:121:4352:-319.963,0,-305.854	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.322	0/0:227:227,0:227:8147:0:0:0,-68.3338,-733.241	0/0:202:202,0:202:7260:0:0:0,-60.8081,-653.448	0/1:19:10,9:10:360:9:324:-23.7839,0,-27.0247	0/0:170:169,0:169:6080:0:0:0,-50.8741,-546.938	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:179:94,85:94:3376:85:3056:-219.301,0,-250.171	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:24:10,14:10:360:14:504:-38.4725,0,-25.5196	0/1:32:12,20:12:432:20:720:-55.4958,0,-29.5882	0/1:130:67,63:67:2404:63:2241:-158.214,0,-177.481	0/1:4:2,2:2:72:2:72:-5.63014,0,-5.6326	0/0:433:433,0:433:15534:0:0:0,-130.346,-1397.76	0/1:198:86,111:86:3088:111:3988:-299.592,0,-218.633	0/1:88:41,47:41:1476:47:1688:-125.665,0,-106.646	0/1:80:38,42:38:1364:42:1512:-112.29,0,-98.9783	0/0:204:202,2:202:7244:2:72:0,-54.5734,-645.175	0/1:66:25,41:25:900:41:1472:-112.895,0,-61.453	0/1:23:11,12:11:392:12:432:-32.2975,0,-28.6964	0/1:66:29,37:29:1044:37:1328:-99.9543,0,-74.4068	0/1:110:59,51:59:2120:51:1828:-131.664,0,-157.955	0/1:48:7,41:7:252:41:1457:-116.97,0,-8.57952	0/0:112:110,2:110:3939:2:72:0,-26.8786,-347.865	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.97	0/0:186:186,0:186:6667:0:0:0,-55.9916,-600.106	0/0:258:258,0:258:9264:0:0:0,-77.6657,-833.724	0/1:100:51,49:51:1832:49:1764:-128.94,0,-135.058	0/0:196:196,0:196:7036:0:0:0,-59.0019,-633.299	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:178:178,0:178:6383:0:0:0,-53.5833,-574.557	0/1:126:50,76:50:1792:76:2728:-207.832,0,-123.633	0/0:274:273,0:273:9784:0:0:0,-82.1812,-880.234	0/1:113:53,60:53:1904:60:2152:-159.736,0,-137.621	0/1:73:39,34:39:1400:34:1220:-88.1247,0,-104.324	0/0:122:121,1:121:4322:1:36:0,-35.7266,-388.157	0/1:190:89,101:89:3187:101:3617:-268.513,0,-229.857	0/1:32:21,11:21:756:11:396:-26.3498,0,-58.7343	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:67:37,30:37:1328:30:1076:-76.9792,0,-99.6532	0/1:77:21,56:21:756:56:2008:-155.734,0,-45.1879	0/0:146:146,0:146:5235:0:0:0,-43.9504,-471.285	0/0:124:124,0:124:4456:0:0:0,-37.3277,-401.209
chr05	4934102	.	A	C	38209.2	PASS	AB=0.519253;ABP=16.8069;AC=48;AF=0.255319;AN=188;AO=2245;CIGAR=1X;DP=10574;DPB=10574;DPRA=0.896804;EPP=4860.61;EPPR=17859.7;GTI=3;LEN=1;MEANALT=1.02;MQM=59.6659;MQMR=59.9765;NS=94;NUMALT=1;ODDS=1.34302;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80218;QR=298731;RO=8323;RPL=2;RPP=4860.61;RPPR=17877;RPR=2243;RUN=1;SAF=2245;SAP=4877.97;SAR=0;SRF=8321;SRP=18058.8;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:16,22:16:568:22:779:-58.9795,0,-40.0127	0/0:128:128,0:128:4596:0:0:0,-38.5318,-413.803	0/1:108:50,58:50:1762:58:2075:-154.484,0,-126.348	0/0:229:229,0:229:8220:0:0:0,-68.9359,-739.809	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:149:85,64:85:3037:64:2288:-161.134,0,-228.705	0/0:243:242,1:242:8700:1:36:0,-69.552,-779.388	0/1:123:63,60:63:2256:60:2148:-156.553,0,-166.276	0/0:172:172,0:172:6168:0:0:0,-51.7772,-555.217	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:71:29,42:29:1044:42:1495:-113.428,0,-70.7335	0/1:72:40,32:40:1440:32:1143:-81.5045,0,-108.224	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:181:81,100:81:2916:100:3590:-268.73,0,-208.188	0/0:155:155,0:155:5549:0:0:0,-46.6596,-499.532	0/1:99:37,62:37:1328:62:2219:-170.137,0,-90.0203	0/1:51:23,28:23:828:28:1004:-75.3233,0,-59.4916	0/0:124:124,0:124:4440:0:0:0,-37.3277,-399.771	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.197	0/0:477:474,3:474:17006:3:104:0,-133.888,-1520.47	0/1:274:137,137:137:4920:137:4898:-358.474,0,-360.467	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/1:329:161,168:161:5754:168:6012:-442.141,0,-418.934	0/1:171:100,71:100:3596:71:2514:-175.011,0,-272.369	0/0:126:126,0:126:4509:0:0:0,-37.9298,-405.976	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	0/0:214:214,0:214:7685:0:0:0,-64.4204,-691.679	0/0:240:239,0:239:8565:0:0:0,-71.9462,-770.481	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:138:69,69:69:2484:69:2445:-178.672,0,-182.271	0/1:23:9,14:9:324:14:496:-38.0487,0,-22.5822	0/1:151:78,73:78:2789:73:2603:-188.997,0,-205.793	0/1:91:42,49:42:1512:49:1752:-130.565,0,-108.981	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:88:42,46:42:1512:46:1635:-120.943,0,-109.884	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/1:240:118,122:118:4248:122:4388:-322.774,0,-310.249	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/0:225:225,0:225:8088:0:0:0,-67.7317,-727.933	0/0:202:202,0:202:7256:0:0:0,-60.8081,-653.089	0/1:20:10,10:10:360:10:360:-26.7213,0,-26.7237	0/0:173:173,0:173:6204:0:0:0,-52.0782,-558.455	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/1:178:92,86:92:3312:86:3072:-221.043,0,-244.714	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:24:10,14:10:360:14:500:-38.1105,0,-25.5196	0/1:33:12,21:12:428:21:752:-58.0723,0,-28.9248	0/1:131:70,61:70:2520:61:2188:-157.744,0,-183.018	0/1:4:2,2:2:72:2:72:-5.63014,0,-5.6326	0/0:436:436,0:436:15645:0:0:0,-131.249,-1407.74	0/1:194:86,108:86:3081:108:3854:-288.653,0,-219.116	0/1:87:41,46:41:1476:46:1640:-121.65,0,-106.947	0/1:80:38,42:38:1368:42:1495:-110.759,0,-99.3384	0/0:207:205,2:205:7360:2:72:0,-55.4765,-655.609	0/1:65:25,40:25:896:40:1432:-109.598,0,-61.3934	0/1:23:11,12:11:392:12:428:-31.9351,0,-28.6964	0/1:66:29,37:29:1044:37:1316:-98.8738,0,-74.4068	0/1:108:59,49:59:2116:49:1756:-125.789,0,-158.198	0/1:49:7,42:7:252:42:1504:-120.902,0,-8.27849	0/0:113:111,2:111:3992:2:72:0,-27.1797,-352.631	0/0:121:120,0:120:4297:0:0:0,-36.1236,-386.545	0/0:186:186,0:186:6656:0:0:0,-55.9916,-599.118	0/0:262:261,0:261:9369:0:0:0,-78.5688,-842.808	0/1:100:51,49:51:1832:49:1760:-128.58,0,-135.058	0/0:195:195,0:195:7004:0:0:0,-58.7008,-630.42	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:178:178,0:178:6381:0:0:0,-53.5833,-574.376	0/1:126:50,76:50:1796:76:2715:-206.663,0,-123.993	0/0:274:274,0:274:9825:0:0:0,-82.4822,-884.19	0/1:116:55,61:55:1976:61:2183:-161.811,0,-143.195	0/1:73:39,34:39:1400:34:1220:-88.1247,0,-104.324	0/0:121:120,0:120:4301:0:0:0,-36.1236,-387.162	0/1:187:87,99:87:3132:99:3535:-261.983,0,-225.753	0/1:32:21,11:21:756:11:396:-26.3498,0,-58.7343	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:79:78,0:78:2808:0:0:0,-23.4803,-252.599	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:69:39,30:39:1400:30:1067:-75.5655,0,-105.528	0/1:75:21,54:21:756:54:1925:-148.871,0,-45.79	0/0:145:145,0:145:5212:0:0:0,-43.6493,-469.211	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.728
chr05	4934133	.	CGAAG	TGAAG,TGAAA	222677	PASS	AB=0.469455,0.524436;ABP=37.5008,25.0842;AC=140,48;AF=0.744681,0.255319;AN=188;AO=8098,2252;CIGAR=1X4M,1X3M1X;DP=10417;DPB=10421;DPRA=18.8496,0.90728;EPP=17587.6,4893.17;EPPR=26.8965;GTI=2;LEN=1,5;MEANALT=2.07609,2.44;MQM=59.9989,59.7367;MQMR=60;NS=94;NUMALT=2;ODDS=0.330679;PAIRED=0,0;PAIREDR=0;PAO=12,12;PQA=417,417;PQR=0;PRO=0;QA=287400,79359;QR=383;RO=11;RPL=8098,2252;RPP=17587.6,4893.17;RPPR=26.8965;RPR=0,0;RUN=1,1;SAF=8098,2252;SAP=17587.6,4893.17;SAR=0,0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,16,23:0:0:16,23:572,809:-112.831,-66.1889,-61.3725,-46.9969,0,-40.0733	1/1:129:0,127,0:0:0:127,0:4511,0:-405.799,-38.2308,0,-405.799,-38.2308,-405.799	1/2:103:0,46,57:0:0:46,57:1594,1979:-290.64,-161.092,-147.245,-129.778,0,-112.619	1/1:218:0,216,0:0:0:216,0:7714,0:-693.935,-65.0225,0,-693.935,-65.0225,-693.935	1/1:41:0,41,0:0:0:41,0:1453,0:-131.064,-12.3422,0,-131.064,-12.3422,-131.064	1/1:9:0,9,0:0:0:9,0:315,0:-28.6872,-2.70927,0,-28.6872,-2.70927,-28.6872	1/2:147:0,80,65:0:0:80,65:2838,2299:-418.464,-187.242,-163.16,-231.217,0,-211.65	1/1:236:0,234,1:0:0:234,1:8317,36:-748.12,-70.441,0,-745.183,-67.5638,-744.882	1/2:123:0,63,60:0:0:63,60:2239,2108:-354.375,-171.92,-152.955,-182.809,0,-164.747	1/1:166:1,165,0:1:35:165,0:5849,0:-523.026,-46.4724,0,-523.327,-49.67,-526.175	1/1:42:1,41,0:1:35:41,0:1460,0:-128.197,-9.14463,0,-128.498,-12.3422,-131.346	1/2:70:0,26,41:0:0:26,41:904,1452:-191.76,-118.264,-110.437,-73.5017,0,-61.1594	1/2:72:0,40,32:0:0:40,32:1423,1135:-208.797,-92.8261,-80.7849,-116.326,0,-106.693	1/1:87:0,86,0:0:0:86,0:3038,0:-273.292,-25.8886,0,-273.292,-25.8886,-273.292	1/1:78:0,76,0:0:0:76,0:2709,0:-243.693,-22.8783,0,-243.693,-22.8783,-243.693	1/1:63:0,63,0:0:0:63,0:2240,0:-201.864,-18.9649,0,-201.864,-18.9649,-201.864	1/1:83:0,83,0:0:0:83,0:2963,0:-266.903,-24.9855,0,-266.903,-24.9855,-266.903	1/1:52:0,52,0:0:0:52,0:1821,0:-164.169,-15.6536,0,-164.169,-15.6536,-164.169	1/1:26:0,26,0:0:0:26,0:888,0:-80.2267,-7.82678,0,-80.2267,-7.82678,-80.2267	1/2:178:0,79,99:0:0:79,99:2802,3511:-514.579,-286.294,-262.513,-228.583,0,-198.781	1/1:152:0,151,0:0:0:151,0:5334,0:-479.916,-45.4555,0,-479.916,-45.4555,-479.916	1/2:99:0,35,64:0:0:35,64:1247,2254:-285.493,-183.849,-173.313,-101.998,0,-82.7321	1/2:51:0,23,28:0:0:23,28:816,984:-146.929,-80.4439,-73.5202,-66.838,0,-58.4092	1/1:120:0,119,0:0:0:119,0:4181,0:-376.114,-35.8226,0,-376.114,-35.8226,-376.114	1/1:65:0,65,0:0:0:65,0:2262,0:-203.84,-19.567,0,-203.84,-19.567,-203.84	1/1:468:0,464,3:0:0:464,3:16530,102:-1487.01,-139.678,0,-1478.73,-131.465,-1477.83	1/2:273:0,136,137:0:0:136,137:4839,4819:-786.989,-392.618,-351.678,-394.724,0,-353.483	1/1:49:0,48,0:0:0:48,0:1702,0:-153.105,-14.4494,0,-153.105,-14.4494,-153.105	1/2:324:0,151,171:0:0:151,171:5371,6023:-928.004,-490.291,-444.835,-437.653,0,-386.177	1/2:172:0,98,74:0:0:98,74:3483,2591:-494.974,-211.144,-181.643,-284.182,0,-261.906	1/1:118:1,116,0:1:36:116,0:4101,0:-365.678,-31.9821,0,-365.979,-34.9195,-368.916	1/2:7:0,4,3:0:0:4,3:144,104:-20.557,-8.79971,-7.59559,-12.1095,0,-11.2064	1/1:11:0,11,0:0:0:11,0:387,0:-35.1659,-3.31133,0,-35.1659,-3.31133,-35.1659	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	2/2:11:0,0,11:0:0:0,11:0,389:-35.3483,-35.3483,-35.3483,-3.31133,-3.31133,0	1/1:211:2,208,0:2:72:208,0:7396,0:-658.854,-56.7394,0,-659.456,-62.6142,-665.331	1/1:235:0,234,0:0:0:234,0:8333,0:-749.609,-70.441,0,-749.609,-70.441,-749.609	1/1:59:0,57,0:0:0:57,0:2048,0:-184.266,-17.1587,0,-184.266,-17.1587,-184.266	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:139:0,69,69:0:0:69,69:2469,2426:-398.738,-197.401,-176.63,-201.332,0,-180.561	1/2:24:0,10,14:0:0:10,14:356,493:-69.5035,-40.4868,-37.4765,-29.3709,0,-25.1565	1/2:148:0,72,75:0:0:72,75:2554,2609:-420.199,-212.117,-190.442,-208.123,0,-185.546	1/2:91:0,42,49:0:0:42,49:1492,1713:-261.274,-139.695,-127.052,-121.931,0,-107.181	1/1:70:0,70,0:0:0:70,0:2484,0:-223.812,-21.0721,0,-223.812,-21.0721,-223.812	1/2:89:0,43,46:0:0:43,46:1536,1607:-256.242,-131.007,-118.063,-125.53,0,-111.683	1/1:86:0,86,0:0:0:86,0:3059,0:-275.54,-25.8886,0,-275.54,-25.8886,-275.54	1/2:237:0,115,121:0:0:115,121:4074,4282:-680.64,-348.767,-314.148,-331.867,0,-295.442	1/1:98:0,97,0:0:0:97,0:3448,0:-310.281,-29.1999,0,-310.281,-29.1999,-310.281	1/1:224:0,222,0:0:0:222,0:7904,0:-711.034,-66.8287,0,-711.034,-66.8287,-711.034	1/1:202:0,202,0:0:0:202,0:7163,0:-644.731,-60.8081,0,-644.731,-60.8081,-644.731	1/2:20:0,10,10:0:0:10,10:356,352:-58.0226,-29.0055,-25.9952,-29.3709,0,-26.3606	1/1:169:0,169,0:0:0:169,0:6001,0:-540.197,-50.8741,0,-540.197,-50.8741,-540.197	1/1:32:0,32,0:0:0:32,0:1144,0:-103.27,-9.63296,0,-103.27,-9.63296,-103.27	1/2:19:0,9,10:0:0:9,10:320,358:-55.6292,-29.5526,-26.8434,-26.4331,0,-23.4228	1/2:180:0,91,87:0:0:91,87:3215,3085:-513.228,-251.4,-224.006,-261.932,0,-235.742	1/1:34:0,34,0:0:0: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chr05	4999762	.	TAGA	AAGA,AAGG	227186	PASS	AB=0.477637,0.52173;ABP=23.5999,22.4509;AC=141,47;AF=0.75,0.25;AN=188;AO=7990,2488;CIGAR=1X3M,1X2M1X;DP=10501;DPB=10501.5;DPRA=56.4462,1.03353;EPP=17353.1,5405.63;EPPR=5.18177;GTI=1;LEN=1,4;MEANALT=1.8172,2.12281;MQM=59.9865,59.9498;MQMR=60;NS=94;NUMALT=2;ODDS=0.560937;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,36;PQR=0;PRO=0;QA=286255,88221;QR=36;RO=1;RPL=0,0;RPP=17353.1,5405.63;RPPR=5.18177;RPR=7990,2488;RUN=1,1;SAF=7990,2488;SAP=17353.1,5405.63;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:72:0,33,39:0:0:33,39:1184,1372:-208.616,-112.037,-102.103,-96.9343,0,-85.1942	1/1:236:0,234,0:0:0:234,0:8408,0:-756.36,-70.441,0,-756.36,-70.441,-756.36	1/2:178:0,96,82:0:0:96,82:3448,2891:-517.018,-235.741,-206.842,-281.633,0,-256.948	1/1:284:0,281,1:0:0:281,1:10056,36:-904.632,-84.5894,0,-901.695,-81.6437,-901.394	1/1:84:0,82,1:0:0:82,1:2944,35:-264.858,-24.6845,0,-262.01,-21.8218,-261.709	1/1:100:0,100,0:0:0:100,0:3596,0:-323.845,-30.103,0,-323.845,-30.103,-323.845	1/2:142:0,68,74:0:0:68,74:2420,2613:-410.375,-213.143,-192.673,-197.587,0,-175.31	1/1:140:0,140,0:0:0:140,0:5032,0:-453.024,-42.1442,0,-453.024,-42.1442,-453.024	1/2:144:0,58,86:0:0:58,86:2084,3027:-416.788,-246.774,-229.314,-170.37,0,-144.482	1/1:121:0,121,0:0:0:121,0:4340,0:-390.774,-36.4246,0,-390.774,-36.4246,-390.774	1/1:52:0,52,0:0:0:52,0:1868,0:-168.399,-15.6536,0,-168.399,-15.6536,-168.399	1/2:56:0,31,25:0:0:31,25:1112,893:-163.865,-73.1637,-63.8318,-91.0594,0,-83.5337	1/2:68:0,39,29:0:0:39,29:1396,1026:-197.765,-83.9219,-72.1818,-114.199,0,-105.469	1/1:83:0,83,0:0:0:83,0:2961,0:-266.717,-24.9855,0,-266.717,-24.9855,-266.717	1/1:66:0,66,0:0:0:66,0:2372,0:-213.738,-19.868,0,-213.738,-19.868,-213.738	1/1:64:0,64,0:0:0:64,0:2304,0:-207.62,-19.2659,0,-207.62,-19.2659,-207.62	1/1:79:0,79,0:0:0:79,0:2824,0:-254.399,-23.7814,0,-254.399,-23.7814,-254.399	1/1:69:0,68,0:0:0:68,0:2444,0:-219.855,-20.47,0,-219.855,-20.47,-219.855	1/1:38:0,38,0:0:0:38,0:1345,0:-121.348,-11.4391,0,-121.348,-11.4391,-121.348	1/2:229:0,126,103:0:0:126,103:4521,3639:-665.053,-296.284,-258.354,-369.125,0,-338.119	1/1:200:0,199,1:0:0:199,1:7148,36:-643.014,-59.905,0,-640.077,-56.6077,-639.776	1/2:80:0,21,59:0:0:21,59:752,2098:-232.656,-171.328,-165.007,-61.6846,0,-43.9239	1/2:125:0,43,82:0:0:43,82:1544,2916:-363.943,-237.992,-225.047,-126.309,0,-101.624	1/1:116:0,116,0:0:0:116,0:4168,0:-375.301,-34.9195,0,-375.301,-34.9195,-375.301	1/1:86:0,86,0:0:0:86,0:3080,0:-277.428,-25.8886,0,-277.428,-25.8886,-277.428	1/1:240:0,238,1:0:0:238,1:8485,36:-763.325,-71.6451,0,-760.388,-68.6728,-760.087	1/2:238:0,120,118:0:0:120,118:4281,4154:-687.514,-338.524,-302.401,-349.344,0,-313.822	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/2:323:0,153,170:0:0:153,170:5492,6048:-941.057,-493.067,-447.009,-448.347,0,-397.172	1/2:174:0,88,86:0:0:88,86:3164,3062:-508.057,-249.921,-223.431,-258.493,0,-232.604	1/1:187:0,186,1:0:0:186,1:6672,36:-600.196,-55.9916,0,-597.258,-52.6943,-596.957	1/2:2:0,1,1:0:0:1,1:32,36:-5.85565,-3.29724,-2.99621,-2.89828,0,-2.59725	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:10:0,5,5:0:0:5,5:180,180:-29.734,-15.0469,-13.5418,-15.0469,0,-13.5418	1/1:178:0,177,0:0:0:177,0:6352,0:-571.409,-53.2823,0,-571.409,-53.2823,-571.409	1/1:116:0,113,3:0:0:113,3:4056,108:-364.866,-34.0164,0,-356.054,-24.8443,-355.151	1/1:41:0,41,0:0:0:41,0:1476,0:-133.136,-12.3422,0,-133.136,-12.3422,-133.136	1/2:8:0,2,6:0:0:2,6:72,210:-23.3131,-17.4357,-16.8337,-6.23466,0,-4.42848	1/2:184:0,96,88:0:0:96,88:3448,3135:-537.161,-255.885,-226.986,-281.633,0,-255.142	1/2:29:0,13,16:0:0:13,16:464,567:-84.3733,-46.5448,-42.6314,-38.1841,0,-33.3676	1/2:224:0,109,115:0:0:109,115:3908,4115:-654.66,-335.917,-303.105,-319.101,0,-284.482	1/2:130:0,50,80:0:0:50,80:1800,2855:-379.979,-233.107,-218.055,-147.231,0,-123.148	1/1:79:0,79,0:0:0:79,0:2813,0:-253.408,-23.7814,0,-253.408,-23.7814,-253.408	1/2:118:0,42,76:0:0:42,76:1508,2706:-343.918,-220.905,-208.261,-123.371,0,-100.493	1/1:190:0,190,0:0:0:190,0:6688,0:-601.993,-57.1957,0,-601.993,-57.1957,-601.993	1/2:190:0,102,88:0:0:102,88:3640,3116:-550.922,-254.178,-223.473,-297.099,0,-270.608	1/1:116:0,115,1:0:0:115,1:4109,36:-369.634,-34.6185,0,-366.697,-31.3212,-366.396	1/1:184:0,184,0:0:0:184,0:6616,0:-595.516,-55.3895,0,-595.516,-55.3895,-595.516	1/1:175:0,173,1:0:0:173,1:6204,36:-558.096,-52.0782,0,-555.158,-49.1408,-554.857	1/2:11:0,7,4:0:0:7,4:252,144:-32.6714,-12.1095,-10.0023,-20.9217,0,-19.7176	1/1:140:0,139,1:0:0:139,1:5000,36:-449.785,-41.8432,0,-446.847,-38.5459,-446.546	1/1:59:0,59,0:0:0:59,0:2120,0:-190.798,-17.7608,0,-190.798,-17.7608,-190.798	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/2:158:0,98,60:0:0:98,60:3508,2140:-460.878,-174.806,-145.305,-286.429,0,-268.368	1/1:69:0,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chr05	4999826	.	G	A	71689.2	PASS	AB=0.507424;ABP=5.94421;AC=44;AF=0.236559;AN=186;AO=3124;CIGAR=1X;DP=13684;DPB=13684;DPRA=1.01228;EPP=168.543;EPPR=1149.81;GTI=0;LEN=1;MEANALT=1.01818;MQM=59.9609;MQMR=59.9924;NS=93;NUMALT=1;ODDS=0.756896;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111917;QR=377331;RO=10555;RPL=3118;RPP=6734.67;RPPR=22723.6;RPR=6;RUN=1;SAF=1312;SAP=176.784;SAR=1812;SRF=4074;SRP=1194.93;SRR=6481;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:97:41,56:41:1476:56:1993:-150.442,0,-103.936	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.484	0/1:211:108,103:108:3859:103:3696:-269.324,0,-283.98	0/0:445:445,0:445:15887:0:0:0,-133.958,-1429.53	0/0:48:47,1:47:1688:1:36:0,-10.8512,-148.609	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:210:103,107:103:3668:107:3817:-280.512,0,-267.109	0/0:118:117,1:117:4195:1:36:0,-31.9233,-374.132	0/1:141:77,64:77:2749:64:2300:-164.76,0,-205.205	0/0:150:150,0:150:5376:0:0:0,-45.1545,-483.971	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/1:129:66,63:66:2360:63:2260:-164.83,0,-173.826	0/1:93:50,43:50:1784:43:1540:-110.897,0,-132.847	0/0:80:80,0:80:2867:0:0:0,-24.0824,-258.266	0/0:155:155,0:155:5555:0:0:0,-46.6596,-500.073	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.384	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:384:219,165:219:7848:165:5917:-416.55,0,-590.751	0/0:209:207,2:207:7393:2:72:0,-56.0785,-658.58	0/1:131:44,87:44:1568:87:3101:-239.853,0,-101.977	0/1:203:89,114:89:3204:114:4080:-306.275,0,-227.473	0/0:91:90,1:90:3209:1:36:0,-23.7955,-285.429	0/0:199:199,0:199:7122:0:0:0,-59.905,-641.037	0/0:421:419,2:419:14880:2:72:0,-119.897,-1332.1	0/1:282:160,122:160:5719:122:4365:-308.132,0,-429.937	0/0:41:41,0:41:1467:0:0:0,-12.3422,-132.325	0/1:595:316,278:316:11270:278:9965:-717.1,0,-835.012	0/1:78:27,51:27:968:51:1809:-139.609,0,-63.957	0/0:276:275,0:275:9812:0:0:0,-82.7832,-882.67	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/0:352:351,0:351:12578:0:0:0,-105.662,-1131.49	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:85:47,38:47:1668:38:1364:-97.4732,0,-124.817	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/1:147:92,55:92:3274:55:1963:-132.693,0,-250.629	0/1:190:76,114:76:2728:114:4092:-311.269,0,-188.567	0/0:146:145,1:145:5192:1:36:0,-40.3521,-463.821	0/1:226:90,136:90:3224:136:4869:-370.328,0,-222.349	0/0:153:152,1:152:5446:1:36:0,-42.4593,-486.668	0/1:300:157,143:157:5588:143:5120:-370.633,0,-412.735	0/0:142:142,0:142:5072:0:0:0,-42.7463,-456.626	0/0:246:246,0:246:8787:0:0:0,-74.0534,-790.82	0/0:296:295,1:295:10480:1:36:0,-85.5066,-939.526	0/1:21:15,6:15:540:6:216:-13.4689,0,-42.6149	0/0:136:136,0:136:4862:0:0:0,-40.9401,-437.733	0/0:106:106,0:106:3760:0:0:0,-31.9092,-338.33	.:.:.:.:.:.:.:.	0/1:108:51,57:51:1828:57:2039:-151.27,0,-132.29	0/0:131:131,0:131:4699:0:0:0,-39.4349,-423.068	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	0/1:78:29,49:29:1035:49:1764:-135.563,0,-69.9827	0/1:189:101,88:101:3624:88:3156:-227.369,0,-269.47	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:307:306,1:306:10939:1:36:0,-88.8179,-980.808	0/1:358:158,200:158:5660:200:7184:-538.844,0,-401.751	0/1:67:41,26:41:1454:26:917:-62.6756,0,-110.985	0/1:193:107,86:107:3820:86:3068:-218.251,0,-285.899	0/0:393:393,0:393:14080:0:0:0,-118.305,-1266.96	0/1:237:86,151:86:3080:151:5416:-416.207,0,-206.084	0/1:37:24,13:24:860:13:468:-31.3215,0,-66.5837	0/1:67:34,33:34:1220:33:1188:-87.0562,0,-89.9378	0/1:141:69,72:69:2455:72:2580:-190.004,0,-178.759	0/1:60:35,25:35:1256:25:896:-62.8986,0,-95.2835	0/0:132:132,0:132:4728:0:0:0,-39.736,-425.679	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:198:198,0:198:7090:0:0:0,-59.6039,-638.158	0/0:261:261,0:261:9334:0:0:0,-78.5688,-840.025	0/1:81:45,36:45:1604:36:1296:-92.5605,0,-120.267	0/0:96:94,2:94:3361:2:72:0,-22.0622,-295.865	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:119:118,1:118:4232:1:36:0,-32.2243,-377.461	0/1:78:50,28:50:1796:28:993:-66.2022,0,-138.442	0/0:573:572,0:572:20427:0:0:0,-172.189,-1837.57	0/1:140:70,70:70:2500:70:2512:-184.187,0,-183.109	0/1:141:67,74:67:2408:74:2656:-196.84,0,-174.531	0/0:166:166,0:166:5911:0:0:0,-49.971,-532.103	0/1:247:108,139:108:3859:139:4977:-373.722,0,-273.151	0/1:22:12,10:12:417:10:360:-26.1216,0,-31.2376	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:66:34,32:34:1212:32:1152:-84.1222,0,-89.5183	0/1:188:60,128:60:2140:128:4600:-357.569,0,-136.274	0/0:273:272,0:272:9736:0:0:0,-81.8802,-875.759	0/0:285:285,0:285:10199:0:0:0,-85.7935,-917.836
chr05	5183716	.	GTTA	GTTC,GTTT	74921.9	PASS	AB=0.476817,0.521107;ABP=9.75614,8.60203;AC=143,45;AF=0.760638,0.239362;AN=188;AO=2680,763;CIGAR=3M1X,3M1X;DP=3456;DPB=3456;DPRA=9.36957,0.999457;EPP=5770.56,1659.84;EPPR=5.18177;GTI=2;LEN=1,1;MEANALT=1.57609,2.02222;MQM=59.9765,59.9948;MQMR=60;NS=94;NUMALT=2;ODDS=0.342075;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=95578,27280;QR=30;RO=1;RPL=2,0;RPP=5805.2,1659.84;RPPR=5.18177;RPR=2678,763;RUN=1,1;SAF=4,0;SAP=5787.86,1659.84;SAR=2676,763;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:11:0,6,5:0:0:6,5:212,180:-32.3087,-15.0469,-13.2407,-17.6186,0,-16.1135	1/1:13:0,13,0:0:0:13,0:460,0:-41.7354,-3.91339,0,-41.7354,-3.91339,-41.7354	1/2:90:0,49,40:0:0:49,40:1760,1432:-260.452,-116.884,-102.133,-143.673,0,-131.632	1/1:173:0,172,1:0:0:172,1:6157,36:-553.867,-51.7772,0,-550.93,-48.4799,-550.629	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:37:0,21,16:0:0:21,16:756,576:-109.044,-47.3585,-41.0369,-62.0456,0,-57.2291	1/1:49:0,49,0:0:0:49,0:1743,0:-157.066,-14.7505,0,-157.066,-14.7505,-157.066	1/2:53:0,24,29:0:0:24,29:860,1036:-154.963,-84.824,-77.5993,-70.4971,0,-61.7672	1/1:55:0,55,0:0:0:55,0:1968,0:-177.395,-16.5567,0,-177.395,-16.5567,-177.395	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	1/2:34:0,18,16:0:0:18,16:644,576:-99.8718,-47.3585,-41.94,-52.8721,0,-48.0556	1/2:36:0,24,12:0:0:24,12:852,432:-105.026,-35.6088,-28.3841,-69.7757,0,-66.1633	1/1:31:0,31,0:0:0:31,0:1080,0:-97.5058,-9.33193,0,-97.5058,-9.33193,-97.5058	1/1:40:0,40,0:0:0:40,0:1418,0:-127.916,-12.0412,0,-127.916,-12.0412,-127.916	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:20:0,20,0:0:0:20,0:707,0:-63.9546,-6.0206,0,-63.9546,-6.0206,-63.9546	1/1:15:0,15,0:0:0:15,0:527,0:-47.7594,-4.51545,0,-47.7594,-4.51545,-47.7594	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:53:0,15,38:0:0:15,38:531,1368:-155.233,-111.982,-107.466,-43.6065,0,-32.1673	1/1:92:0,92,0:0:0:92,0:3272,0:-294.702,-27.6948,0,-294.702,-27.6948,-294.702	1/2:40:0,13,27:0:0:13,27:464,972:-117.496,-79.6701,-75.7567,-38.1841,0,-30.0563	1/2:23:0,8,15:0:0:8,15:288,532:-67.1988,-43.6976,-41.2894,-23.8592,0,-19.3437	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:79:0,79,0:0:0:79,0:2794,0:-251.701,-23.7814,0,-251.701,-23.7814,-251.701	1/2:119:0,62,56:0:0:62,56:2224,1997:-344.266,-162.863,-144.199,-181.479,0,-164.621	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:110:0,45,65:0:0:45,65:1607,2313:-319.879,-188.862,-175.316,-131.373,0,-111.806	1/2:40:0,23,17:0:0:23,17:815,604:-115.965,-49.5731,-42.6494,-66.7471,0,-61.6296	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:111:0,111,0:0:0:111,0:3951,0:-355.78,-33.4143,0,-355.78,-33.4143,-355.78	1/1:36:0,36,0:0:0:36,0:1280,0:-115.503,-10.8371,0,-115.503,-10.8371,-115.503	1/1:18:0,18,0:0:0:18,0:632,0:-57.2068,-5.41854,0,-57.2068,-5.41854,-57.2068	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:57:0,31,26:0:0:31,26:1106,936:-166.892,-76.7327,-67.4008,-90.5175,0,-82.6907	1/2:14:0,4,10:0:0:4,10:144,360:-41.4837,-29.734,-28.5299,-12.1095,0,-9.0992	1/2:33:0,15,18:0:0:15,18:536,640:-96.2138,-52.5108,-47.9953,-44.0594,0,-38.6408	1/2:15:0,7,8:0:0:7,8:252,277:-43.425,-22.8567,-20.7495,-20.9217,0,-18.5135	1/1:12:0,12,0:0:0:12,0:420,0:-38.134,-3.61236,0,-38.134,-3.61236,-38.134	1/2:51:0,26,25:0:0:26,25:924,888:-148.008,-72.7133,-64.8865,-75.6495,0,-68.1238	1/1:40:0,37,0:0:0:37,0:1315,0:-118.31,-11.1381,0,-118.31,-11.1381,-118.31	1/2:48:0,22,26:0:0:22,26:784,936:-140.636,-76.7327,-70.11,-64.2613,0,-56.4345	1/1:63:0,63,0:0:0:63,0:2244,0:-202.221,-18.9649,0,-202.221,-18.9649,-202.221	1/1:62:0,62,0:0:0:62,0:2203,0:-198.535,-18.6639,0,-198.535,-18.6639,-198.535	1/1:46:0,46,0:0:0:46,0:1647,0:-148.518,-13.8474,0,-148.518,-13.8474,-148.518	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:37:0,37,0:0:0:37,0:1319,0:-119.011,-11.1381,0,-119.011,-11.1381,-119.011	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/2:56:0,32,24:0:0:32,24:1127,860:-162.246,-70.4971,-60.8642,-92.1045,0,-84.8798	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/2:15:0,5,10:0:0:5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chr05	5183749	.	G	A	56966.3	PASS	AB=0.467219;ABP=16.5352;AC=143;AF=0.760638;AN=188;AO=2664;CIGAR=1X;DP=3448;DPB=3448;DPRA=9.34783;EPP=5744.46;EPPR=1701.1;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9711;MQMR=59.9949;NS=94;NUMALT=1;ODDS=0.331937;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95136;QR=28001;RO=782;RPL=2664;RPP=5787.81;RPPR=1701.1;RPR=0;RUN=1;SAF=5;SAP=5744.46;SAR=2659;SRF=0;SRP=1701.1;SRR=782;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:86:40,46:40:1428:46:1624:-120.558,0,-102.929	1/1:174:0,174:0:0:174:6220:-559.897,-52.3792,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:37:16,21:16:576:21:756:-57.2291,0,-41.0369	1/1:48:0,48:0:0:48:1703:-153.526,-14.4494,0	0/1:52:29,23:29:1040:23:816:-58.1082,0,-78.2608	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:30:15,15:15:540:15:532:-39.1822,0,-39.9056	0/1:38:13,25:13:460:25:884:-68.4392,0,-30.2962	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:10:0,10:0:0:10:339:-30.8367,-3.0103,0	0/1:53:38,15:38:1348:15:532:-32.2585,0,-105.666	1/1:89:0,88:0:0:88:3144:-282.826,-26.4906,0	0/1:40:27,13:27:972:13:468:-30.4184,0,-75.7567	0/1:23:15,8:15:540:8:288:-19.3437,0,-42.0128	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	1/1:77:0,77:0:0:77:2756:-248.28,-23.1793,0	0/1:126:60,66:60:2144:66:2362:-174.909,0,-155.298	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/1:111:67,44:67:2408:44:1572:-108.357,0,-183.562	0/1:41:18,23:18:640:23:820:-61.7803,0,-45.5871	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:105:0,105:0:0:105:3745:-337.25,-31.6082,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:56:26,30:26:932:30:1080:-80.6556,0,-67.3412	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:32:18,14:18:640:14:504:-36.0651,0,-48.2964	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.7496	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:51:26,25:26:932:25:892:-65.2472,0,-68.8463	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:51:29,22:29:1036:22:784:-55.5314,0,-78.2014	1/1:61:0,61:0:0:61:2174:-195.926,-18.3628,0	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:37:0,37:0:0:37:1323:-119.371,-11.1381,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:55:25,30:25:891:30:1072:-80.2358,0,-63.9521	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	1/1:16:0,16:0:0:16:559:-50.637,-4.81648,0	0/1:37:19,18:19:680:18:640:-46.7912,0,-50.3911	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	0/1:41:27,14:27:968:14:496:-32.632,0,-75.0951	0/1:29:18,11:18:639:11:396:-27.2529,0,-49.1084	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	1/1:66:0,65:0:0:65:2316:-208.341,-19.567,0	0/1:82:63,19:63:2264:19:676:-36.4835,0,-179.338	0/1:15:10,5:10:360:5:176:-11.6696,0,-28.2289	0/1:27:6,21:6:216:21:756:-60.2394,0,-11.6627	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	1/1:104:0,104:0:0:104:3701:-333.292,-31.3071,0	1/1:58:0,58:0:0:58:2078:-187.288,-17.4597,0	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	1/1:28:1,27:1:36:27:964:-83.4785,-4.83057,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:41:18,23:18:644:23:820:-61.7803,0,-45.9484	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:25:10,15:10:356:15:540:-41.4108,0,-24.8555	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:37:22,15:22:784:15:536:-37.35,0,-59.7458	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:39:0,39:0:0:39:1388:-125.211,-11.7402,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:14:0,14:0:0:14:500:-45.3343,-4.21442,0	0/1:37:19,18:19:675:18:644:-47.1525,0,-49.9388	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	1/1:67:0,67:0:0:67:2381:-214.546,-20.169,0	1/1:38:0,38:0:0:38:1358:-122.52,-11.4391,0
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chr05	5321316	.	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chr05	5321376	.	ACAG	GCAG,ACAA,GCAA	113772	PASS	AB=0.519943,0.464381,0.070459;ABP=12.6239,31.9376,2482.22;AC=138,36,14;AF=0.734043,0.191489,0.0744681;AN=188;AO=4032,1221,148;CIGAR=1X3M,3M1X,1X2M1X;DP=5420;DPB=5420;DPRA=0,1.09105,1.13576;EPP=8732.35,2637.03,324.388;EPPR=5.18177;GTI=10;LEN=1,1,4;MEANALT=2.15054,2.69767,2.63265;MQM=59.5131,59.6626,41.527;MQMR=60;NS=94;NUMALT=3;ODDS=4648.19;PAIRED=0,0,0;PAIREDR=0;PAO=0,0,0;PQA=0,0,0;PQR=0;PRO=0;QA=144268,43678,5244;QR=36;RO=1;RPL=4029,1219,148;RPP=8732.35,2637.03,324.388;RPPR=5.18177;RPR=3,2,0;RUN=1,1,1;SAF=4032,1221,148;SAP=8758.39,2654.38,324.388;SAR=0,0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:33:0,17,15,1:0:0:17,15,1:604,517,36:-91.2065,-41.9913,-36.8738,-49.2164,0,-44.701,-88.3749,-39.1595,-46.3852,-88.0739	1/1:56:0,56,0,0:0:0:56,0,0:2016,0,0:-181.511,-16.8577,0,-181.511,-16.8577,-181.511,-181.511,-16.8577,-181.511,-181.511	1/2:73:0,39,33,0:0:0:39,33,0:1404,1169,0:-209.771,-95.2134,-83.4732,-114.557,0,-104.623,-209.771,-95.2134,-114.557,-209.771	1/1:124:0,121,0,2:0:0:121,0,2:4343,0,72:-390.551,-36.4246,0,-390.551,-36.4246,-390.551,-384.848,-30.7269,-384.848,-384.246	1/3:21:0,15,0,6:0:0:15,0,6:540,0,216:-61.2617,-17.1935,-12.6781,-61.2617,-17.1935,-61.2617,-44.4177,0,-44.4177,-42.6115	1/1:20:0,19,0,1:0:0:19,0,1:680,0,36:-61.1806,-5.71957,0,-61.1806,-5.71957,-61.1806,-58.3495,-2.5399,-58.3495,-58.0485	1/2:61:0,30,31,0:0:0:30,31,0:1076,1116,0:-179.095,-91.4198,-82.3889,-88.0338,0,-78.7019,-179.095,-91.4198,-88.0338,-179.095	1/1:86:0,84,0,2:0:0:84,0,2:3016,0,72:-271.277,-25.2865,0,-271.277,-25.2865,-271.277,-265.614,-19.2753,-265.614,-265.012	1/2:87:0,35,49,3:0:0:35,49,3:1245,1764,108:-245.345,-143.923,-133.387,-101.43,0,-86.6798,-236.851,-135.429,-92.9361,-235.948	1/1:53:0,52,0,0:0:0:52,0,0:1868,0,0:-168.041,-15.6536,0,-168.041,-15.6536,-168.041,-168.041,-15.6536,-168.041,-168.041	1/3:16:1,12,0,3:1:36:12,0,3:428,0,108:-40.1639,-5.60722,-4.93467,-40.4649,-8.54703,-43.4026,-31.9119,0,-34.8496,-33.9465	1/2:70:0,30,40,0:0:0:30,40,0:1076,1417,0:-203.512,-115.753,-106.723,-88.1153,0,-76.0741,-203.512,-115.753,-88.1153,-203.512	1/2:61:0,34,27,0:0:0:34,27,0:1224,964,0:-178.686,-78.8792,-68.6442,-100.165,0,-92.0368,-178.686,-78.8792,-100.165,-178.686	1/1:36:0,35,1,0:0:0:35,1,0:1256,36,0:-112.957,-10.5361,0,-110.02,-7.23881,-109.719,-112.957,-10.5361,-110.02,-112.957	1/1:49:0,49,0,0:0:0:49,0,0:1758,0,0:-158.458,-14.7505,0,-158.458,-14.7505,-158.458,-158.458,-14.7505,-158.458,-158.458	1/1:39:0,39,0,0:0:0:39,0,0:1404,0,0:-126.546,-11.7402,0,-126.546,-11.7402,-126.546,-126.546,-11.7402,-126.546,-126.546	1/3:29:0,25,0,4:0:0:25,0,4:896,0,124:-83.0245,-9.94736,-2.42161,-83.0245,-9.94736,-83.0245,-73.3863,0,-73.3863,-72.1822	1/1:35:0,35,0,0:0:0:35,0,0:1260,0,0:-113.683,-10.5361,0,-113.683,-10.5361,-113.683,-113.683,-10.5361,-113.683,-113.683	1/1:13:0,12,0,1:0:0:12,0,1:432,0,36:-38.8722,-3.61236,0,-38.8722,-3.61236,-38.8722,-36.0415,-0.432695,-36.0415,-35.7405	1/2:91:0,51,36,3:0:0:51,36,3:1836,1288,102:-254.852,-105.043,-89.6909,-149.823,0,-138.986,-246.702,-96.8949,-141.674,-245.799	1/1:107:0,107,0,0:0:0:107,0,0:3840,0,0:-345.614,-32.2102,0,-345.614,-32.2102,-345.614,-345.614,-32.2102,-345.614,-345.614	1/2:111:0,40,63,6:0:0:40,63,6:1440,2256,216:-301.439,-183.958,-171.917,-117.494,0,-98.5287,-284.181,-166.7,-100.235,-282.375	1/2:97:0,46,51,0:0:0:46,51,0:1630,1828,0:-282.145,-149.448,-135.601,-133.053,0,-117.701,-282.145,-149.448,-133.053,-282.145	1/1:6:0,6,0,0:0:0:6,0,0:216,0,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905,-19.7905,-1.80618,-19.7905,-19.7905	1/1:95:0,87,0,8:0:0:87,0,8:3128,0,288:-281.284,-26.1896,0,-281.284,-26.1896,-281.284,-258.72,-3.27757,-258.72,-256.312	1/1:152:0,150,0,2:0:0:150,0,2:5357,0,72:-481.83,-45.1545,0,-481.83,-45.1545,-481.83,-476.067,-39.0379,-476.067,-475.465	1/2:155:0,61,93,1:0:0:61,93,1:2177,3336,36:-449.59,-272.116,-253.753,-177.486,0,-149.49,-446.782,-269.308,-174.678,-446.481	1/1:43:0,43,0,0:0:0:43,0,0:1539,0,0:-138.8,-12.9443,0,-138.8,-12.9443,-138.8,-138.8,-12.9443,-138.8,-138.8	1/2:143:0,58,83,1:0:0:58,83,1:2080,2976,36:-412.337,-242.696,-225.236,-169.644,0,-144.659,-409.456,-239.814,-166.763,-409.155	1/2:93:0,40,53,0:0:0:40,53,0:1425,1899,0:-271.307,-155.192,-143.151,-116.471,0,-100.517,-271.307,-155.192,-116.471,-271.307	1/1:58:0,57,0,1:0:0:57,0,1:2044,0,36:-183.864,-17.1587,0,-183.864,-17.1587,-183.864,-181.013,-13.957,-181.013,-180.712	1/3:11:0,5,1,5:0:0:5,1,5:180,36,180:-28.7206,-14.0281,-12.5229,-25.7825,-11.0883,-25.4815,-14.6871,0,-11.7497,-13.1819	1/3:25:0,20,0,5:0:0:20,0,5:720,0,178:-72.9158,-14.2627,-8.24211,-72.9158,-14.2627,-72.9158,-58.9992,0,-58.9992,-57.494	1/3:65:0,48,2,15:0:0:48,2,15:1713,72,537:-181.961,-42.3296,-27.8802,-176.086,-36.4533,-175.484,-139.622,0,-133.747,-135.107	1/3:42:0,36,0,6:0:0:36,0,6:1274,0,211:-120.576,-16.9617,-6.12459,-120.576,-16.9617,-120.576,-103.958,0,-103.958,-102.151	1/3:46:0,30,6,10:0:0:30,6,10:1076,216,341:-114.569,-26.8396,-17.8087,-96.9432,-9.20463,-95.1371,-87.7175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chr05	5321388	.	G	A	18854.6	PASS	AB=0.478015;ABP=13.4174;AC=39;AF=0.207447;AN=188;AO=1189;CIGAR=1X;DP=5339;DPB=5339;DPRA=1.19631;EPP=2584.89;EPPR=9010.28;GTI=2;LEN=1;MEANALT=1;MQM=59.6266;MQMR=58.884;NS=94;NUMALT=1;ODDS=1.39398;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41833;QR=147921;RO=4148;RPL=1189;RPP=2584.89;RPPR=9010.28;RPR=0;RUN=1;SAF=1189;SAP=2584.89;SAR=0;SRF=4148;SRP=9010.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:17,15:17:604:15:528:-38.2184,0,-44.9429	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.364	0/1:67:37,30:37:1311:30:1064:-75.892,0,-98.1219	0/0:125:124,0:124:4437:0:0:0,-37.3277,-398.813	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.0616	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.0224	0/1:59:30,29:30:1068:29:1024:-74.7118,0,-78.5832	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.531	0/1:83:36,47:36:1284:47:1656:-124.322,0,-90.6279	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.62	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.4648	0/1:67:28,39:28:996:39:1349:-101.508,0,-69.7825	0/1:59:33,26:33:1157:26:924:-65.6471,0,-86.6498	0/0:37:36,1:36:1271:1:32:0,-7.9388,-111.464	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.24	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.466	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.1259	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.33	0/0:13:13,0:13:464:0:0:0,-3.91339,-41.9908	0/1:90:52,38:52:1868:38:1352:-94.8821,0,-141.132	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.38	0/1:110:47,63:47:1684:63:2209:-165.912,0,-118.343	0/1:93:45,48:45:1620:48:1700:-125.29,0,-117.899	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:98:98,0:98:3498:0:0:0,-29.5009,-314.071	0/0:149:149,0:149:5321:0:0:0,-44.8535,-478.862	0/1:150:62,88:62:2219:88:3044:-229.036,0,-154.69	0/0:43:43,0:43:1486:0:0:0,-12.9443,-134.027	0/1:142:58,84:58:2080:84:2961:-223.964,0,-144.657	0/1:89:41,48:41:1448:48:1704:-126.811,0,-103.788	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.674	0/1:11:10,1:10:360:1:36:-0.286945,0,-28.7788	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.073	0/0:61:60,1:60:2148:1:36:0,-14.7646,-188.514	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.061	0/1:44:38,6:38:1352:6:212:-6.17948,0,-107.809	0/0:137:137,0:137:4912:0:0:0,-41.2411,-442.197	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.5006	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.4826	0/1:67:26,41:26:936:41:1456:-111.126,0,-64.362	0/1:14:9,5:9:324:5:167:-11.1402,0,-25.2914	0/1:121:76,45:76:2702:45:1580:-106.066,0,-206.794	0/1:35:14,21:14:492:21:748:-57.1092,0,-33.9459	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.06	0/1:95:39,56:39:1395:56:1934:-145.714,0,-97.1973	0/0:51:51,0:51:1832:0:0:0,-15.3525,-164.926	0/1:116:73,43:73:2608:43:1505:-100.82,0,-200.027	0/0:48:48,0:48:1720:0:0:0,-14.4494,-154.877	0/0:60:60,0:60:2142:0:0:0,-18.0618,-192.923	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.46	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.9608	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.646	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0257	0/0:19:18,1:18:648:1:36:0,-2.12129,-54.2906	0/1:60:32,28:32:1148:28:980:-70.4511,0,-85.568	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3034	0/1:16:14,2:14:496:2:72:-2.00171,0,-40.0528	0/0:11:11,0:11:377:0:0:0,-3.31133,-33.7636	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:87:41,46:41:1452:46:1612:-118.938,0,-104.749	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7029	0/0:98:97,0:97:3447:0:0:0,-29.1999,-309.84	0/1:121:55,66:55:1953:66:2332:-173.703,0,-139.411	0/1:41:28,13:28:1000:13:456:-29.031,0,-77.9447	0/1:28:19,9:19:684:9:316:-20.3223,0,-53.355	0/0:86:86,0:86:3079:0:0:0,-25.8886,-276.967	0/1:88:36,52:36:1283:52:1848:-140.096,0,-88.7536	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.5514	0/1:20:14,6:14:504:6:208:-13.0385,0,-39.6775	0/1:48:32,16:32:1148:16:564:-36.6409,0,-89.0635	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.5925	0/0:79:79,0:79:2797:0:0:0,-23.7814,-251.83	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.478	0/0:85:84,1:84:2992:1:36:0,-21.9893,-264.41	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.406	0/1:56:15,41:15:540:41:1449:-113.836,0,-32.0789	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.006	0/1:11:10,1:10:356:1:36:-0.286945,0,-28.7037	0/0:29:29,0:29:1044:0:0:0,-8.72987,-93.9866	0/1:76:45,31:45:1608:31:1100:-76.4281,0,-121.663	0/0:95:95,0:95:3389:0:0:0,-28.5978,-304.805	0/0:57:57,0:57:2015:0:0:0,-17.1587,-181.573	0/1:67:41,26:41:1430:26:920:-62.9343,0,-108.823	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.234	0/1:106:65,41:65:2300:41:1443:-98.2284,0,-175.315	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7459	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.759	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:40:29,11:29:1032:11:380:-22.4801,0,-81.1523	0/1:31:23,8:23:816:8:288:-16.9272,0,-64.3945	0/0:54:54,0:54:1913:0:0:0,-16.2556,-172.402	0/0:100:100,0:100:3588:0:0:0,-30.103,-322.999
chr05	5321526	.	AAATG	GCATA,ACATG	179688	PASS	AB=0.532053,0.462425;ABP=40.1777,54.0876;AC=144,44;AF=0.765957,0.234043;AN=188;AO=7057,1932;CIGAR=2X2M1X,1M1X3M;DP=9033;DPB=9033.2;DPRA=0,1.02077;EPP=15327.1,4198.29;EPPR=0;GTI=1;LEN=5,1;MEANALT=1.92553,2.46939;MQM=37.705,59.5533;MQMR=0;NS=94;NUMALT=2;ODDS=0.157405;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=32,0;PQR=0;PRO=0;QA=250697,69165;QR=0;RO=0;RPL=0,0;RPP=15327.1,4198.29;RPPR=0;RPR=7057,1932;RUN=1,1;SAF=7057,1932;SAP=15327.1,4198.29;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:94:0,45,48:0:0:45,48:1609,1712:-261.567,-139.519,-125.972,-122.037,0,-107.588	1/1:53:0,53,0:0:0:53,0:1874,0:-158.021,-15.9546,0,-158.021,-15.9546,-158.021	1/2:142:0,73,69:0:0:73,69:2570,2465:-397.511,-201.244,-179.269,-196.612,0,-175.841	1/1:150:0,150,0:0:0:150,0:5302,0:-448.788,-45.1545,0,-448.788,-45.1545,-448.788	1/1:52:0,51,0:0:0:51,0:1819,0:-151.202,-15.3525,0,-151.202,-15.3525,-151.202	1/1:36:0,36,0:0:0:36,0:1278,0:-108.928,-10.8371,0,-108.928,-10.8371,-108.928	1/2:79:0,23,56:0:0:23,56:816,2012:-226.026,-164.494,-157.57,-61.8713,0,-45.0136	1/1:108:0,108,0:0:0:108,0:3834,0:-325.419,-32.5112,0,-325.419,-32.5112,-325.419	1/2:137:0,78,56:0:0:78,56:2750,1993:-371.112,-162.354,-138.873,-208.758,0,-191.901	1/1:67:0,65,0:0:0:65,0:2303,0:-194.518,-19.567,0,-194.518,-19.567,-194.518	1/1:41:0,41,0:0:0:41,0:1449,0:-121.425,-12.3422,0,-121.425,-12.3422,-121.425	1/2:90:0,50,40:0:0:50,40:1773,1440:-252.444,-117.825,-102.774,-134.967,0,-122.926	1/2:103:0,61,42:0:0:61,42:2180,1508:-289.047,-123.34,-104.977,-166.056,0,-153.413	1/1:58:0,57,0:0:0:57,0:2021,0:-170.739,-17.1587,0,-170.739,-17.1587,-170.739	1/1:83:0,83,0:0:0:83,0:2977,0:-252.28,-24.9855,0,-252.28,-24.9855,-252.28	1/1:66:0,66,0:0:0:66,0:2358,0:-199.565,-19.868,0,-199.565,-19.868,-199.565	1/1:24:0,24,0:0:0:24,0:854,0:-72.8856,-7.22472,0,-72.8856,-7.22472,-72.8856	1/1:28:0,28,0:0:0:28,0:1000,0:-85.2176,-8.42884,0,-85.2176,-8.42884,-85.2176	1/1:28:0,28,0:0:0:28,0:1001,0:-85.2406,-8.42884,0,-85.2406,-8.42884,-85.2406	1/2:202:0,90,110:0:0:90,110:3186,3936:-561.939,-320.845,-293.752,-241.08,0,-207.967	1/1:150:0,149,0:0:0:149,0:5235,0:-441.385,-44.8535,0,-441.385,-44.8535,-441.385	1/2:141:0,62,79:0:0:62,79:2202,2840:-397.456,-232.048,-213.384,-165.75,0,-141.969	1/2:104:0,52,52:0:0:52,52:1861,1860:-291.025,-151.927,-136.273,-139.442,0,-123.788	1/1:73:0,73,0:0:0:73,0:2601,0:-220.92,-21.9752,0,-220.92,-21.9752,-220.92	1/1:104:0,104,0:0:0:104,0:3693,0:-311.796,-31.3071,0,-311.796,-31.3071,-311.796	1/1:226:0,224,2:0:0:224,2:7956,72:-674.519,-67.4307,0,-668.644,-61.1961,-668.042	1/2:253:0,127,125:0:0:127,125:4520,4472:-709.871,-364.644,-326.414,-345.234,0,-307.605	1/1:30:0,30,0:0:0:30,0:1079,0:-91.4453,-9.0309,0,-91.4453,-9.0309,-91.4453	1/2:185:0,65,119:0:0:65,119:2311,4268:-523.207,-348.04,-328.473,-175.153,0,-139.33	1/2:129:0,54,75:0:0:54,75:1886,2688:-363.021,-219.503,-203.247,-143.859,0,-121.282	1/1:83:0,83,0:0:0:83,0:2955,0:-248.196,-24.9855,0,-248.196,-24.9855,-248.196	1/2:19:0,9,10:0:0:9,10:309,356:-52.9504,-29.3709,-26.6617,-23.919,0,-20.9087	1/1:52:0,52,0:0:0:52,0:1836,0:-154.708,-15.6536,0,-154.708,-15.6536,-154.708	1/1:39:0,36,1:0:0:36,1:1280,36:-108.647,-10.8371,0,-105.709,-7.89563,-105.408	1/1:88:0,87,0:0:0:87,0:3089,0:-260.352,-26.1896,0,-260.352,-26.1896,-260.352	1/2:31:0,23,8:0:0:23,8:823,288:-85.6571,-23.8592,-16.9355,-62.1506,0,-59.7423	1/1:209:0,208,0:0:0:208,0:7414,0:-622.755,-62.6142,0,-622.755,-62.6142,-622.755	1/1:176:0,176,0:0:0:176,0:6235,0:-528.532,-52.9813,0,-528.532,-52.9813,-528.532	1/1:41:0,41,0:0:0:41,0:1470,0:-124.075,-12.3422,0,-124.075,-12.3422,-124.075	1/2:15:0,12,3:0:0:12,3:424,108:-40.6842,-9.17208,-5.55972,-31.8651,0,-30.962	1/2:94:0,41,51:0:0:41,51:1457,1836:-260.069,-149.811,-137.469,-110.247,0,-94.8943	1/2:47:0,26,21:0:0:26,21:927,756:-132.043,-61.9871,-54.1603,-70.4038,0,-64.0822	1/2:266:0,167,99:0:0:167,99:5919,3506:-735.048,-285.578,-235.306,-449.815,0,-420.013	1/2:55:0,28,26:0:0:28,26:1006,928:-151.554,-75.6548,-67.226,-75.8896,0,-68.0628	1/1:62:0,62,0:0:0:62,0:2215,0:-186.368,-18.6639,0,-186.368,-18.6639,-186.368	1/2:127:0,70,57:0:0:70,57:2491,2052:-357.421,-167.788,-146.716,-189.982,0,-172.823	1/1:197:0,197,0:0:0:197,0:7032,0:-595.96,-59.3029,0,-595.96,-59.3029,-595.96	1/2:148:0,94,52:0:0:94,52:3327,1860:-404.665,-151.392,-123.095,-253.265,0,-237.612	1/1:86:0,86,0:0:0:86,0:3078,0:-260.968,-25.8886,0,-260.968,-25.8886,-260.968	1/1:99:0,99,0:0:0:99,0:3515,0:-298.073,-29.802,0,-298.073,-29.802,-298.073	1/1:126:0,126,0:0:0:126,0:4444,0:-377.149,-37.9298,0,-377.149,-37.9298,-377.149	1/2:23:0,17,6:0:0:17,6:606,216:-64.2733,-17.9843,-12.8668,-46.6426,0,-44.8364	1/1:190:0,190,0:0:0:190,0:6772,0:-574.118,-57.1957,0,-574.118,-57.1957,-574.118	1/1:58:0,56,0:0:0:56,0:1998,0:-169.39,-16.8577,0,-169.39,-16.8577,-169.39	1/2:10:0,7,3:0:0:7,3:251,108:-28.3338,-9.17208,-7.06487,-19.5149,0,-18.6118	1/2:193:0,127,64:0:0:127,64:4478,2286:-524.464,-186.402,-148.171,-338.169,0,-318.903	1/1:73:0,73,0:0:0:73,0:2611,0:-218.98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chr05	5321647	.	G	A	24831.1	PASS	AB=0.519025;ABP=11.5205;AC=39;AF=0.207447;AN=188;AO=1418;CIGAR=1X;DP=6516;DPB=6516;DPRA=0.976942;EPP=2877.23;EPPR=11066.7;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.6629;MQMR=59.9731;NS=94;NUMALT=1;ODDS=0.295978;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50603;QR=180754;RO=5095;RPL=25;RPP=2868.84;RPPR=11049.3;RPR=1393;RUN=1;SAF=1;SAP=3073.48;SAR=1417;SRF=2;SRP=11049.3;SRR=5093;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:17,2:17:608:2:72:-1.11715,0,-49.3325	0/0:92:89,3:89:3180:3:108:0,-17.6196,-276.349	0/1:77:34,43:34:1182:43:1548:-116.427,0,-83.5012	0/0:110:110,0:110:3919:0:0:0,-33.1133,-352.531	0/0:59:59,0:59:2089:0:0:0,-17.7608,-188.278	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/1:51:27,24:27:954:24:860:-62.3693,0,-70.8214	0/0:121:120,1:120:4257:1:36:0,-32.8264,-379.702	0/1:64:31,33:31:1095:33:1180:-87.2412,0,-79.5932	0/0:83:83,0:83:2937:0:0:0,-24.9855,-264.517	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2452	0/1:61:37,24:37:1311:24:836:-57.191,0,-99.928	0/1:82:48,34:48:1707:34:1211:-84.6088,0,-129.231	0/0:66:66,0:66:2341:0:0:0,-19.868,-210.948	0/0:69:69,0:69:2429:0:0:0,-20.7711,-218.865	0/0:54:54,0:54:1918:0:0:0,-16.2556,-172.896	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:140:38,102:38:1368:102:3648:-286.342,0,-81.2766	0/0:86:86,0:86:3003:0:0:0,-25.8886,-270.504	0/1:102:41,61:41:1460:61:2163:-164.211,0,-100.991	0/1:31:11,20:11:392:20:720:-55.7968,0,-26.2881	0/0:77:77,0:77:2740:0:0:0,-23.1793,-246.844	0/0:47:46,1:46:1648:1:36:0,-10.575,-145.035	0/0:229:229,0:229:8055:0:0:0,-68.9359,-724.981	0/1:100:38,62:38:1356:62:2220:-169.955,0,-92.2375	0/0:22:22,0:22:777:0:0:0,-6.62266,-70.2504	0/1:166:68,97:68:2415:97:3460:-261.546,0,-167.577	0/1:89:27,62:27:968:62:2220:-173.27,0,-60.6457	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.115	0/1:12:10,2:10:360:2:68:-2.84535,0,-29.1319	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7375	0/0:50:47,3:47:1672:3:108:0,-4.97633,-140.692	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:174:174,0:174:6203:0:0:0,-52.3792,-558.37	0/0:138:138,0:138:4895:0:0:0,-41.5421,-440.704	0/0:50:50,0:50:1758:0:0:0,-15.0515,-158.502	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:85:24,61:24:864:61:2177:-170.488,0,-52.495	0/1:24:15,9:15:523:9:324:-22.2811,0,-40.1737	0/1:100:60,40:60:2129:40:1417:-97.6969,0,-161.774	0/1:62:34,28:34:1200:28:1008:-72.3516,0,-89.6417	0/0:54:54,0:54:1871:0:0:0,-16.2556,-168.666	0/1:47:19,28:19:669:28:982:-74.5425,0,-46.3855	0/0:115:115,0:115:4057:0:0:0,-34.6184,-365.318	0/1:116:43,73:43:1496:73:2616:-200.727,0,-100.011	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:85:84,1:84:2968:1:36:0,-21.9893,-263.752	0/0:56:56,0:56:1982:0:0:0,-16.8577,-178.567	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:97:96,0:96:3436:0:0:0,-28.8989,-309.094	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:15:14,1:14:500:1:36:0,-0.917175,-41.7379	0/1:137:70,67:70:2437:67:2400:-175.004,0,-178.304	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:22:21,1:21:723:1:36:0,-3.02539,-61.7885	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:104:64,40:64:2266:40:1432:-97.8635,0,-172.895	0/1:6:5,1:5:165:1:32:-1.39313,0,-13.3674	0/0:167:167,0:167:5971:0:0:0,-50.272,-537.497	0/1:152:69,83:69:2450:83:2976:-222.283,0,-174.998	0/1:62:36,26:36:1284:26:923:-64.7007,0,-97.1996	0/1:92:39,53:39:1377:53:1895:-143.094,0,-96.5319	0/0:97:97,0:97:3427:0:0:0,-29.1999,-308.644	0/1:34:6,28:6:216:28:1000:-80.0528,0,-9.55549	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:46:34,12:34:1207:12:432:-25.3738,0,-95.043	0/1:83:46,37:46:1641:37:1315:-93.6646,0,-122.991	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.395	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.789	0/0:71:70,0:70:2455:0:0:0,-21.0721,-220.841	0/0:142:142,0:142:5035:0:0:0,-42.7463,-453.298	0/1:77:49,28:49:1725:28:995:-66.6847,0,-132.353	0/0:77:77,0:77:2759:0:0:0,-23.1793,-248.551	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:81:79,2:79:2828:2:72:0,-17.5467,-247.922	0/1:98:51,47:51:1811:47:1688:-122.704,0,-133.77	0/0:164:164,0:164:5821:0:0:0,-49.3689,-523.979	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:92:54,38:54:1927:38:1364:-95.2797,0,-146.011	0/0:105:105,0:105:3747:0:0:0,-31.6081,-337.431	0/1:141:75,66:75:2663:66:2327:-167.238,0,-197.468	0/1:33:11,22:11:396:22:777:-60.3155,0,-26.0488	0/0:79:79,0:79:2805:0:0:0,-23.7814,-252.644	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:49:25,24:25:884:24:849:-61.9474,0,-65.1279	0/1:32:19,13:19:680:13:460:-32.1024,0,-51.8962	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.973	0/0:109:109,0:109:3881:0:0:0,-32.8123,-349.484
chr05	5321662	.	G	A	24886.1	PASS	AB=0.5194;ABP=11.941;AC=39;AF=0.207447;AN=188;AO=1437;CIGAR=1X;DP=6560;DPB=6560;DPRA=1.12676;EPP=2926.84;EPPR=11114.4;GTI=1;LEN=1;MEANALT=1.05769;MQM=59.5922;MQMR=59.9691;NS=94;NUMALT=1;ODDS=0.0727733;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51120;QR=180891;RO=5117;RPL=24;RPP=2918.44;RPPR=11097.1;RPR=1413;RUN=1;SAF=1;SAP=3114.74;SAR=1436;SRF=2;SRP=11097.1;SRR=5115;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:17,3:17:604:3:108:-4.05457,0,-48.67	0/0:92:89,3:89:3127:3:108:0,-17.6196,-271.58	0/1:79:35,44:35:1229:44:1576:-118.341,0,-87.1303	0/0:109:109,0:109:3881:0:0:0,-32.8123,-348.858	0/0:59:59,0:59:2072:0:0:0,-17.7608,-186.749	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:56:28,28:28:983:28:996:-73.0847,0,-71.9249	0/0:123:122,1:122:4327:1:36:0,-33.4284,-386.008	0/1:64:33,31:33:1167:31:1107:-80.6733,0,-86.0705	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.863	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/1:62:37,25:37:1324:25:853:-58.4122,0,-100.798	0/1:80:46,34:46:1619:34:1192:-83.4992,0,-121.916	0/0:66:66,0:66:2299:0:0:0,-19.868,-207.167	0/0:69:69,0:69:2411:0:0:0,-20.7711,-217.246	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.986	0/0:61:61,0:61:2145:0:0:0,-18.3628,-193.316	0/0:60:59,0:59:2091:0:0:0,-17.7608,-188.1	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:141:38,103:38:1353:103:3675:-288.472,0,-79.6232	0/0:88:87,0:87:3061:0:0:0,-26.1896,-275.438	0/1:101:40,61:40:1411:61:2192:-167.123,0,-96.8825	0/1:31:10,21:10:360:21:727:-56.4101,0,-23.4124	0/0:79:79,0:79:2800:0:0:0,-23.7814,-252.239	0/0:47:46,1:46:1635:1:36:0,-10.575,-143.865	0/0:233:233,0:233:8213:0:0:0,-70.14,-739.188	0/1:99:37,62:37:1328:62:2190:-167.555,0,-90.0203	0/0:21:21,0:21:731:0:0:0,-6.32163,-66.1104	0/1:168:68,100:68:2411:100:3563:-270.266,0,-166.674	0/1:90:28,62:28:980:62:2220:-172.969,0,-61.4175	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.321	0/1:12:10,2:10:352:2:63:-2.3708,0,-28.4058	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:50:47,3:47:1643:3:108:0,-4.97633,-138.079	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/0:171:170,0:170:6037:0:0:0,-51.1751,-543.076	0/0:139:139,0:139:4932:0:0:0,-41.8432,-444.033	0/0:53:53,0:53:1842:0:0:0,-15.9546,-166.056	0/0:16:16,0:16:552:0:0:0,-4.81648,-50.0029	0/1:83:24,59:24:856:59:2124:-166.346,0,-52.3756	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/1:100:60,40:60:2139:40:1411:-97.1582,0,-162.674	0/1:63:35,28:35:1256:28:1004:-71.6901,0,-94.3804	0/0:54:53,1:53:1868:1:36:0,-12.832,-164.973	0/1:46:18,28:18:640:28:993:-75.8351,0,-44.0819	0/0:118:118,0:118:4176:0:0:0,-35.5215,-376.022	0/1:120:45,75:45:1586:75:2668:-204.198,0,-106.905	0/0:58:58,0:58:2056:0:0:0,-17.4597,-185.309	0/0:86:85,1:85:3024:1:36:0,-22.2903,-268.791	0/0:56:56,0:56:1976:0:0:0,-16.8577,-178.109	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:95:94,1:94:3343:1:36:0,-24.9996,-297.49	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:16:15,1:15:540:1:36:0,-1.2182,-45.3374	0/1:139:71,68:71:2504:68:2425:-176.649,0,-183.769	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9198	0/0:20:19,1:19:669:1:36:0,-2.42333,-56.9367	0/1:6:4,2:4:135:2:72:-5.03054,0,-10.6763	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/1:104:65,39:65:2305:39:1369:-92.1969,0,-176.403	0/1:6:5,1:5:176:1:27:-0.893603,0,-14.3788	0/0:161:160,1:160:5698:1:36:0,-44.8676,-509.331	0/1:156:70,85:70:2499:85:3010:-224.076,0,-178.141	0/1:61:35,26:35:1260:26:925:-65.1897,0,-95.3427	0/1:93:42,51:42:1496:51:1809:-135.049,0,-106.939	0/0:98:97,1:97:3448:1:36:0,-25.9027,-306.934	0/1:34:6,28:6:216:28:1004:-80.4133,0,-9.55549	0/1:12:10,2:10:341:2:72:-3.22436,0,-27.3972	0/1:46:33,13:33:1130:13:464:-28.2468,0,-88.1055	0/1:83:46,37:46:1593:37:1328:-94.8358,0,-118.669	0/1:16:6,9:6:201:9:309:-23.2671,0,-13.5453	0/0:72:72,0:72:2538:0:0:0,-21.6742,-228.672	0/0:53:53,0:53:1878:0:0:0,-15.9546,-169.289	0/0:71:71,0:71:2521:0:0:0,-21.3731,-227.139	0/0:145:145,0:145:5105:0:0:0,-43.6493,-459.596	0/1:79:50,29:50:1736:29:1022:-68.5095,0,-132.738	0/0:74:74,0:74:2615:0:0:0,-22.2762,-235.596	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:83:81,2:81:2885:2:72:0,-18.1488,-253.049	0/1:100:51,49:51:1832:49:1747:-127.409,0,-135.058	0/0:164:162,1:162:5750:1:36:0,-45.8095,-514.011	0/0:72:72,0:72:2504:0:0:0,-21.6742,-225.611	0/1:92:55,37:55:1929:37:1327:-91.9675,0,-146.188	0/0:106:106,0:106:3746:0:0:0,-31.9092,-337.341	0/1:142:75,67:75:2614:67:2396:-173.146,0,-192.762	0/1:33:11,22:11:363:22:788:-61.3099,0,-23.053	0/0:79:79,0:79:2765:0:0:0,-23.7814,-249.046	0/0:61:61,0:61:2149:0:0:0,-18.3628,-193.676	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/1:51:26,25:26:911:25:896:-65.2905,0,-66.9524	0/1:32:19,13:19:656:13:460:-32.1024,0,-49.7264	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/0:109:109,0:109:3879:0:0:0,-32.8123,-349.303
chr05	5372100	.	TAG	TTG,TG	81014.1	PASS	AB=0.43709,0.561816;ABP=65.85,63.6832;AC=141,43;AF=0.766304,0.233696;AN=184;AO=2738,1038;CIGAR=1M1X1M,1M1D1M;DP=3781;DPB=3434.67;DPRA=5.18269,1.12788;EPP=5948.5,2257;EPPR=0;GTI=1;LEN=1,1;MEANALT=1.52747,2.02273;MQM=59.8937,53.0944;MQMR=0;NS=92;NUMALT=2;ODDS=0.373979;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=98171,36669;QR=0;RO=0;RPL=2738,1038;RPP=5948.5,2257;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=5948.5,2257;SAR=2738,1038;SRF=0;SRP=0;SRR=0;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/2:47:0,19,28:0:0:19,28:680,988:-135.66,-80.4764,-74.7569,-55.5378,0,-47.109	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3154,-8.42884,0,-90.3154,-8.42884,-90.3154	1/2:54:0,14,40:0:0:14,40:504,1413:-156.027,-114.901,-110.687,-41.4837,0,-29.4425	1/1:66:0,65,0:0:0:65,0:2328,0:-209.42,-19.567,0,-209.42,-19.567,-209.42	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/1:28:0,28,0:0:0:28,0:1008,0:-90.9802,-8.42884,0,-90.9802,-8.42884,-90.9802	1/2:29:0,8,21:0:0:8,21:288,752:-85.0144,-61.5143,-59.1061,-23.8592,0,-17.5375	1/1:48:0,48,0:0:0:48,0:1724,0:-155.445,-14.4494,0,-155.445,-14.4494,-155.445	1/2:69:0,38,31:0:0:38,31:1368,1100:-200.508,-88.8807,-77.4415,-111.982,0,-102.65	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/2:47:0,25,22:0:0:25,22:900,760:-135.394,-61.9504,-54.4247,-73.7953,0,-67.1726	1/2:45:0,20,25:0:0:20,25:720,874:-129.273,-70.5182,-64.4976,-59.1082,0,-51.5824	1/1:36:0,36,0:0:0:36,0:1289,0:-116.313,-10.8371,0,-116.313,-10.8371,-116.313	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:66:0,30,36:0:0:30,36:1072,1282:-192.03,-104.625,-95.5939,-87.7616,0,-76.9245	1/1:53:0,53,0:0:0:53,0:1888,0:-170.198,-15.9546,0,-170.198,-15.9546,-170.198	1/2:55:0,24,31:0:0:24,31:864,1108:-160.69,-90.2473,-83.0226,-70.8007,0,-61.4688	1/2:37:0,24,13:0:0:24,13:864,456:-107.42,-36.9134,-29.6887,-70.8578,0,-66.9445	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/1:43:0,41,2:0:0:41,2:1476,72:-132.721,-12.3422,0,-126.85,-6.1125,-126.248	1/1:115:0,115,0:0:0:115,0:4082,0:-367.519,-34.6185,0,-367.519,-34.6185,-367.519	1/2:93:0,46,47:0:0:46,47:1648,1637:-267.397,-132.988,-119.141,-134.761,0,-120.613	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/2:126:0,64,62:0:0:64,62:2300,2184:-365.472,-177.836,-158.57,-187.991,0,-169.327	1/2:87:0,40,47:0:0:40,47:1416,1674:-251.816,-136.477,-124.436,-115.693,0,-101.545	1/1:51:0,51,0:0:0:51,0:1836,0:-165.51,-15.3525,0,-165.51,-15.3525,-165.51	.:.:.:.:.:.:.:.	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:4:0,1,3:0:0:1,3:36,108:-12.1023,-9.16481,-8.86378,-3.29724,0,-2.39415	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:7:0,3,4:0:0:3,4:108,136:-20.1639,-11.3427,-10.4396,-9.17208,0,-7.96796	1/1:106:0,105,0:0:0:105,0:3767,0:-338.867,-31.6082,0,-338.867,-31.6082,-338.867	1/1:56:0,56,0:0:0:56,0:2016,0:-181.713,-16.8577,0,-181.713,-16.8577,-181.713	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	.:.:.:.:.:.:.:.	1/2:46:0,22,24:0:0:22,24:792,856:-134.318,-69.6925,-63.0698,-64.983,0,-57.7583	1/2:12:0,4,8:0:0:4,8:144,280:-34.8464,-23.0933,-21.8892,-12.1095,0,-9.70126	1/2:84:0,27,57:0:0:27,57:968,2000:-241.094,-162.195,-154.068,-79.2534,0,-62.0947	1/2:22:0,12,10:0:0:12,10:432,360:-64.8983,-29.6488,-26.0365,-35.6088,0,-32.5985	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:59:0,22,37:0:0:22,37:788,1301:-169.686,-105.433,-98.8099,-64.6084,0,-53.4702	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9144,-8.72987,0,-93.9144,-8.72987,-93.9144	1/2:80:0,38,42:0:0:38,42:1364,1488:-232.556,-121.308,-109.869,-111.604,0,-98.9607	1/1:40:0,40,0:0:0:40,0:1428,0:-128.779,-12.0412,0,-128.779,-12.0412,-128.779	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6759,-8.42884,0,-90.6759,-8.42884,-90.6759	1/1:68:0,68,0:0:0:68,0:2448,0:-220.571,-20.47,0,-220.571,-20.47,-220.571	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:55:0,55,0:0:0:55,0:1976,0:-178.115,-16.5567,0,-178.115,-16.5567,-178.115	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:10:0,6,4:0:0:6,4:212,140:-28.9999,-11.7323,-9.92612,-17.6186,0,-16.4145	1/2:48:0,17,31:0:0:17,31:612,1081:-137.99,-88.0501,-82.9326,-50.2959,0,-40.964	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/2:4:0,2,2:0:0:2,2:72,72:-12.1047,-6.22973,-5.62767,-6.23466,0,-5.6326	1/2:25:0,15,10:0:0:15,10:536,352:-72.6421,-28.9362,-24.4208,-44.0594,0,-41.0491	1/1:43:0,42,1:0:0:42,1:1509,36:-135.73,-12.6433,0,-132.793,-9.34602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chr05	5396163	.	A	C	96622.9	PASS	AB=0.52381;ABP=14.1779;AC=142;AF=0.755319;AN=188;AO=4498;CIGAR=1X;DP=5597;DPB=5597;DPRA=0;EPP=9770.29;EPPR=2380.77;GTI=4;LEN=1;MEANALT=1.04255;MQM=59.904;MQMR=59.8813;NS=94;NUMALT=1;ODDS=0.89536;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160810;QR=39265;RO=1095;RPL=4498;RPP=9770.29;RPPR=2380.77;RPR=0;RUN=1;SAF=0;SAP=9770.29;SAR=4498;SRF=0;SRP=2380.77;SRR=1095;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:10,8:10:356:8:284:-20.4848,0,-26.9627	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:58:19,39:19:680:39:1400:-108.839,0,-44.0648	1/1:175:1,174:1:36:174:6240:-558.082,-49.082,0	1/1:22:0,22:0:0:22:782:-70.6939,-6.62266,0	1/1:12:0,12:0:0:12:413:-37.4978,-3.61236,0	0/1:41:14,27:14:504:27:972:-75.4332,0,-33.3559	1/1:55:0,55:0:0:55:1961:-176.765,-16.5567,0	0/1:35:15,20:15:540:20:712:-53.8706,0,-38.4005	1/1:94:0,94:0:0:94:3349:-301.59,-28.2968,0	1/1:26:0,26:0:0:26:921:-83.2052,-7.82678,0	0/1:66:40,26:40:1440:26:932:-64.3309,0,-110.03	0/1:70:26,44:26:936:44:1572:-120.691,0,-63.4874	1/1:52:0,52:0:0:52:1855:-167.23,-15.6536,0	1/1:71:0,71:0:0:71:2543:-229.107,-21.3731,0	1/1:54:0,54:0:0:54:1912:-172.332,-16.2556,0	1/1:39:0,39:0:0:39:1396:-125.931,-11.7402,0	1/1:27:0,27:0:0:27:945:-85.3485,-8.12781,0	1/1:22:0,22:0:0:22:773:-69.8718,-6.62266,0	0/1:66:32,34:32:1140:34:1224:-90.5991,0,-83.0275	1/1:114:0,114:0:0:114:4059:-365.228,-34.3174,0	0/1:42:23,19:23:828:19:684:-49.2471,0,-62.1975	0/1:62:28,34:28:1008:34:1205:-90.09,0,-72.3725	1/1:20:0,20:0:0:20:705:-63.7728,-6.0206,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:139:0,139:0:0:139:4963:-446.794,-41.8432,0	0/1:86:55,31:55:1963:31:1112:-74.5028,0,-151.056	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:146:77,68:77:2760:68:2436:-175.486,0,-204.632	0/1:87:40,47:40:1436:47:1630:-120.79,0,-103.348	1/1:75:0,75:0:0:75:2668:-240.364,-22.5773,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4788	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:164:0,164:0:0:164:5869:-528.283,-49.3689,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:123:63,60:63:2264:60:2148:-156.561,0,-166.67	0/1:29:19,10:19:684:10:360:-24.0144,0,-53.1605	0/1:57:25,32:25:896:32:1148:-86.4711,0,-63.7792	0/1:48:17,31:17:612:31:1116:-86.3023,0,-40.7356	1/1:66:0,66:0:0:66:2361:-212.691,-19.868,0	0/1:79:30,49:30:1072:49:1752:-134.183,0,-73.0111	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:100:45,55:45:1608:55:1936:-144.409,0,-114.82	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:69:0,69:0:0:69:2470:-222.554,-20.7711,0	1/1:26:1,25:1:36:25:885:-76.3682,-4.22851,0	0/1:13:5,8:5:180:8:284:-21.9844,0,-12.6387	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	1/1:45:0,45:0:0:45:1614:-145.493,-13.5464,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:83:49,34:49:1745:34:1216:-84.752,0,-132.347	1/1:31:0,30:0:0:30:1080:-97.1534,-9.0309,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:56:21,35:21:756:35:1243:-95.3024,0,-51.5095	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:157:0,157:0:0:157:5616:-505.524,-47.2617,0	0/1:114:44,70:44:1576:70:2512:-192.014,0,-107.814	0/1:37:22,15:22:773:15:540:-37.7984,0,-58.7514	0/1:52:19,33:19:684:33:1176:-90.4942,0,-46.2368	1/1:128:0,128:0:0:128:4577:-412.077,-38.5318,0	0/1:71:44,27:44:1576:27:964:-65.7037,0,-120.758	0/1:22:9,13:9:324:13:459:-35.0214,0,-22.8832	0/1:27:14,13:14:504:13:464:-33.9697,0,-37.5703	0/1:47:19,28:19:684:28:980:-74.3614,0,-47.741	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:99:0,99:0:0:99:3548:-319.528,-29.802,0	1/1:91:0,91:0:0:91:3253:-292.97,-27.3937,0	1/1:114:0,114:0:0:114:4088:-368.096,-34.3174,0	1/1:148:0,148:0:0:148:5324:-479.263,-44.5524,0	0/1:39:21,18:21:756:18:648:-46.9117,0,-56.6271	1/1:90:0,90:0:0:90:3221:-290.109,-27.0927,0	0/0:15:14,1:14:500:1:36:0,-0.917175,-41.7379	1/1:97:0,97:0:0:97:3469:-312.42,-29.1999,0	0/1:77:40,36:40:1436:36:1284:-92.6254,0,-106.264	1/1:131:0,131:0:0:131:4704:-423.518,-39.4349,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:65:35,30:35:1256:30:1080:-77.9463,0,-93.7783	1/1:50:0,50:0:0:50:1796:-161.914,-15.0515,0	0/1:143:56,87:56:2012:87:3120:-237.965,0,-138.306	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:66:0,66:0:0:66:2359:-212.568,-19.868,0	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	0/1:49:21,28:21:752:28:985:-74.2103,0,-53.2558	0/1:62:34,27:34:1224:27:972:-69.0753,0,-91.7444	1/1:134:0,134:0:0:134:4784:-430.655,-40.338,0	1/1:90:2,88:2:72:88:3164:-278.135,-20.256,0
chr05	5667034	.	TGAAT	AGAAC,TGAAC	211378	PASS	AB=0.422039,0.573829;ABP=194.648,174.871;AC=142,46;AF=0.755319,0.244681;AN=188;AO=5795,2099;CIGAR=1X3M1X,4M1X;DP=7942;DPB=7943.8;DPRA=17.0688,0.991271;EPP=94.8248,5.4942;EPPR=0;GTI=1;LEN=5,1;MEANALT=2.06452,2.30909;MQM=59.9061,59.9481;MQMR=0;NS=94;NUMALT=2;ODDS=6.38386;PAIRED=0,0;PAIREDR=0;PAO=4.5,4.5;PQA=153.5,153.5;PQR=0;PRO=0;QA=198844,74712;QR=0;RO=0;RPL=36,6;RPP=12275.9,4508.96;RPPR=0;RPR=5759,2093;RUN=1,1;SAF=3181,1031;SAP=123.477,4.42657;SAR=2614,1068;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:45:0,23,21:0:0:23,21:792,744:-124.936,-60.6126,-53.6889,-64.323,0,-58.0014	1/1:100:0,99,0:0:0:99,0:3392,0:-305.271,-29.802,0,-305.271,-29.802,-305.271	1/2:162:0,82,80:0:0:82,80:2833,2807:-458.933,-228.785,-204.1,-230.496,0,-206.413	1/1:73:0,72,1:0:0:72,1:2437,21:-219.374,-21.6742,0,-217.787,-19.8752,-217.486	1/1:38:0,36,2:0:0:36,2:1247,63:-112.214,-10.8371,0,-107.15,-5.45599,-106.548	1/1:32:0,32,0:0:0:32,0:1086,0:-98.0434,-9.63296,0,-98.0434,-9.63296,-98.0434	1/2:62:0,24,38:0:0:24,38:802,1349:-175.191,-110.27,-103.045,-65.2636,0,-53.8245	1/1:102:0,100,0:0:0:100,0:3440,0:-309.53,-30.103,0,-309.53,-30.103,-309.53	1/2:150:0,74,75:0:0:74,75:2559,2662:-424.83,-216.918,-194.641,-207.932,0,-185.355	1/1:44:0,44,0:0:0:44,0:1521,0:-137.119,-13.2453,0,-137.119,-13.2453,-137.119	1/1:85:0,85,0:0:0:85,0:2857,0:-257.376,-25.5876,0,-257.376,-25.5876,-257.376	1/2:154:0,77,76:0:0:77,76:2657,2716:-437.453,-221.601,-198.422,-215.997,0,-193.119	1/2:134:0,61,72:0:0:61,72:2106,2550:-378.549,-207.452,-189.089,-171.097,0,-149.422	1/1:152:0,152,0:0:0:152,0:5146,0:-463.304,-45.7566,0,-463.304,-45.7566,-463.304	1/1:64:0,64,0:0:0:64,0:2210,0:-199.166,-19.2659,0,-199.166,-19.2659,-199.166	1/1:89:0,88,0:0:0:88,0:3017,0:-271.486,-26.4906,0,-271.486,-26.4906,-271.486	1/1:125:0,122,0:0:0:122,0:4213,0:-379.028,-36.7257,0,-379.028,-36.7257,-379.028	1/1:58:0,57,0:0:0:57,0:1969,0:-177.126,-17.1587,0,-177.126,-17.1587,-177.126	1/1:81:0,80,0:0:0:80,0:2786,0:-250.671,-24.0824,0,-250.671,-24.0824,-250.671	1/2:156:0,54,101:0:0:54,101:1779,3620:-439.065,-295.271,-279.015,-143.803,0,-113.399	1/1:185:0,184,1:0:0:184,1:6321,36:-568.649,-55.3895,0,-565.712,-52.0923,-565.411	1/2:37:0,15,22:0:0:15,22:507,784:-105.352,-64.2613,-59.7458,-41.4361,0,-34.8135	1/2:66:0,23,43:0:0:23,43:795,1531:-189.732,-125.138,-118.214,-64.9427,0,-51.9984	1/1:95:0,94,0:0:0:94,0:3279,0:-295.036,-28.2968,0,-295.036,-28.2968,-295.036	1/1:84:0,84,0:0:0:84,0:2915,0:-261.571,-25.2865,0,-261.571,-25.2865,-261.571	1/1:156:0,155,1:0:0:155,1:5302,36:-476.981,-46.6597,0,-474.043,-43.3624,-473.742	1/2:195:0,74,120:0:0:74,120:2542,4269:-554.374,-347.965,-325.689,-206.456,0,-170.333	1/1:67:0,67,0:0:0:67,0:2353,0:-212.022,-20.169,0,-212.022,-20.169,-212.022	1/2:166:0,78,88:0:0:78,88:2718,3156:-478.806,-257.774,-234.294,-221.385,0,-194.895	1/2:68:0,30,38:0:0:30,38:996,1364:-192.186,-111.622,-102.591,-80.9083,0,-69.4691	1/1:55:0,54,0:0:0:54,0:1852,0:-166.42,-16.2556,0,-166.42,-16.2556,-166.42	1/2:9:0,4,5:0:0:4,5:128,180:-25.3409,-15.0469,-13.8428,-10.6316,0,-9.12647	1/1:13:0,13,0:0:0:13,0:452,0:-41.0105,-3.91339,0,-41.0105,-3.91339,-41.0105	1/2:3:0,1,2:0:0:1,2:35,72:-9.07908,-6.23466,-5.93363,-3.1976,0,-2.59554	1/1:13:0,13,0:0:0:13,0:442,0:-40.1055,-3.91339,0,-40.1055,-3.91339,-40.1055	1/2:14:0,4,10:0:0:4,10:142,360:-41.3028,-29.734,-28.5299,-11.9251,0,-8.91479	1/1:280:0,277,0:0:0:277,0:9493,0:-854.052,-83.3853,0,-854.052,-83.3853,-854.052	1/1:57:0,57,0:0:0:57,0:1957,0:-176.404,-17.1587,0,-176.404,-17.1587,-176.404	1/1:77:0,76,1:0:0:76,1:2562,36:-230.47,-22.8783,0,-227.533,-19.581,-227.232	2/2:5:0,0,5:0:0:0,5:0,176:-16.185,-16.185,-16.185,-1.50515,-1.50515,0	1/2:94:0,36,58:0:0:36,58:1255,2076:-271.714,-169.651,-158.814,-102.415,0,-84.9551	1/2:53:0,22,31:0:0:22,31:749,1088:-149.653,-88.8945,-82.2719,-61.1032,0,-51.7713	1/2:115:0,60,55:0:0:60,55:2057,1954:-326.566,-159.578,-141.516,-167.337,0,-150.781	1/2:107:0,47,60:0:0:47,60:1611,2143:-305.298,-175.075,-160.927,-130.57,0,-112.509	1/1:83:0,82,0:0:0:82,0:2748,0:-247.205,-24.6845,0,-247.205,-24.6845,-247.205	1/2:98:0,45,51:0:0:45,51:1539,1815:-272.679,-147.933,-134.387,-124.749,0,-109.396	1/1:95:0,93,0:0:0:93,0:3223,0:-289.989,-27.9958,0,-289.989,-27.9958,-289.989	1/2:108:0,44,64:0:0:44,64:1489,2272:-306.118,-185.415,-172.17,-120.99,0,-101.724	1/1:48:0,48,0:0:0:48,0:1649,0:-148.695,-14.4494,0,-148.695,-14.4494,-148.695	1/1:54:0,53,0:0:0:53,0:1815,0:-163.387,-15.9546,0,-163.387,-15.9546,-163.387	1/1:77:0,77,0:0:0:77,0:2644,0:-238.149,-23.1793,0,-238.149,-23.1793,-238.149	1/2:6:0,2,4:0:0:2,4:72,140:-17.6186,-11.7405,-11.1384,-6.23466,0,-5.03054	1/1:110:0,110,0:0:0:110,0:3815,0:-343.556,-33.1133,0,-343.556,-33.1133,-343.556	1/1:36:0,36,0:0:0:36,0:1255,0:-113.253,-10.8371,0,-113.253,-10.8371,-113.253	1/2:10:0,4,6:0:0:4,6:138,216:-29.1892,-17.9843,-16.7802,-11.5557,0,-9.74951	1/2:99:0,49,50:0:0:49,50:1680,1788:-282.535,-146.151,-131.401,-136.734,0,-121.683	1/1:35:0,35,0:0:0:35,0:1167,0:-105.324,-10.5361,0,-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chr05	5789706	.	A	G	91764.5	PASS	AB=0.536758;ABP=29.5103;AC=142;AF=0.763441;AN=186;AO=4284;CIGAR=1X;DP=5349;DPB=5349;DPRA=6.44928;EPP=9279.56;EPPR=2309.11;GTI=4;LEN=1;MEANALT=1.02174;MQM=59.9911;MQMR=59.9821;NS=93;NUMALT=1;ODDS=0.625573;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152989;QR=38004;RO=1062;RPL=3;RPP=9279.56;RPPR=2309.11;RPR=4281;RUN=1;SAF=0;SAP=9305.6;SAR=4284;SRF=0;SRP=2309.11;SRR=1062;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:10,29:10:360:29:1035:-81.7237,0,-21.0041	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:107:37,70:37:1319:70:2504:-193.402,0,-86.801	1/1:118:0,118:0:0:118:4212:-379.26,-35.5215,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:36:0,36:0:0:36:1287:-116.133,-10.8371,0	0/1:50:16,34:16:576:34:1220:-95.0553,0,-37.1235	1/1:114:0,114:0:0:114:4064:-365.946,-34.3174,0	0/1:77:24,53:24:860:53:1908:-148.818,0,-54.5425	1/1:49:0,49:0:0:49:1740:-156.883,-14.7505,0	1/1:38:2,36:2:72:36:1296:-110.107,-4.60242,0	0/1:60:27,33:27:963:33:1171:-87.6349,0,-68.8179	0/1:52:28,24:28:1008:24:856:-61.7075,0,-75.3828	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:44:0,44:0:0:44:1564:-141.05,-13.2453,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:39:16,23:16:568:23:824:-62.7431,0,-39.7117	1/1:107:0,107:0:0:107:3833:-345.166,-32.2102,0	0/1:34:23,11:23:824:11:392:-25.385,0,-64.2483	0/1:113:51,62:51:1809:62:2228:-166.767,0,-129.073	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	1/1:231:0,231:0:0:231:8267:-744.037,-69.5379,0	0/1:145:74,71:74:2641:71:2548:-185.921,0,-194.286	1/1:20:0,20:0:0:20:704:-63.6845,-6.0206,0	0/1:125:63,62:63:2264:62:2192:-159.915,0,-166.394	0/1:106:46,60:46:1656:60:2137:-160.688,0,-117.419	1/1:100:0,100:0:0:100:3554:-320.068,-30.103,0	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:17:3,14:3:108:14:500:-40.2187,0,-4.95766	1/1:100:0,98:0:0:98:3490:-313.951,-29.5009,0	1/1:67:0,67:0:0:67:2381:-214.546,-20.169,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	.:.:.:.:.:.:.:.	0/1:61:29,32:29:1044:32:1144:-84.9067,0,-75.912	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:77:35,42:35:1256:42:1508:-112.835,0,-90.166	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:92:0,92:0:0:92:3278:-295.24,-27.6948,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:104:44,60:44:1576:60:2148:-162.28,0,-110.824	1/1:52:1,51:1:36:51:1836:-161.922,-12.0553,0	1/1:76:1,75:1:36:75:2688:-238.566,-19.28,0	1/1:74:0,73:0:0:73:2616:-235.328,-21.9752,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:103:0,103:0:0:103:3683:-331.671,-31.0061,0	1/1:48:0,48:0:0:48:1710:-154.185,-14.4494,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:96:44,52:44:1584:52:1856:-138.421,0,-113.953	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:18:8,10:8:279:10:356:-26.9627,0,-20.029	1/1:44:0,44:0:0:44:1566:-141.231,-13.2453,0	0/1:83:47,36:47:1677:36:1284:-90.8772,0,-126.23	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	1/1:136:0,136:0:0:136:4845:-436.199,-40.9401,0	0/1:222:85,137:85:3035:137:4878:-372.343,0,-206.551	0/1:40:16,24:16:567:24:852:-64.9592,0,-39.3195	0/1:53:25,28:25:896:28:1000:-74.3608,0,-65.0058	1/1:146:2,144:2:72:144:5116:-453.747,-37.1137,0	0/1:126:84,42:84:3020:42:1508:-98.0848,0,-234.1	0/1:12:4,8:4:144:8:282:-22.1091,0,-9.70126	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	0/1:53:26,27:26:928:27:964:-71.1222,0,-67.8837	0/1:18:8,10:8:288:10:346:-26.0494,0,-20.8489	1/1:119:0,119:0:0:119:4249:-382.588,-35.8226,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:112:0,112:0:0:112:3997:-359.92,-33.7154,0	1/1:108:0,108:0:0:108:3864:-347.956,-32.5112,0	0/1:36:25,11:25:896:11:396:-25.1457,0,-70.1233	1/1:52:1,51:1:36:51:1832:-161.563,-12.0553,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:43:0,43:0:0:43:1527:-137.722,-12.9443,0	0/1:32:15,17:15:536:17:612:-45.7805,0,-38.9419	1/1:178:0,178:0:0:178:6354:-571.95,-53.5833,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:36:22,14:22:783:14:504:-34.861,0,-59.9559	1/1:24:0,24:0:0:24:859:-77.6315,-7.22472,0	0/1:56:26,30:26:932:30:1080:-80.6556,0,-67.3412	0/1:10:6,4:6:207:4:140:-9.93428,0,-15.9566	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:31:0,31:0:0:31:1083:-97.7771,-9.33193,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:52:27,25:27:964:25:860:-62.0581,0,-71.4233	0/1:23:14,9:14:500:9:324:-22.5822,0,-38.4125	1/1:74:0,74:0:0:74:2636:-237.485,-22.2762,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0
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chr05	5885540	.	C	T	10675.4	PASS	AB=0.486161;ABP=7.15726;AC=42;AF=0.223404;AN=188;AO=1226;CIGAR=1X;DP=6557;DPB=6557;DPRA=1.04351;EPP=2665.24;EPPR=11566.1;GTI=6;LEN=1;MEANALT=1.0625;MQM=38.7186;MQMR=59.729;NS=94;NUMALT=1;ODDS=0.109681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43957;QR=188755;RO=5325;RPL=1226;RPP=2665.24;RPPR=11566.1;RPR=0;RUN=1;SAF=1226;SAP=2665.24;SAR=0;SRF=5325;SRP=11566.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:11,27:11:384:27:972:-53.8169,0,-23.4554	0/0:66:66,0:66:2344:0:0:0,-19.868,-211.22	0/1:71:28,43:28:1000:43:1535:-76.7428,0,-68.9422	0/0:161:161,0:161:5689:0:0:0,-48.4658,-511.982	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9838	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:112:68,44:68:2405:44:1584:-77.8832,0,-182.979	0/0:106:106,0:106:3745:0:0:0,-31.9092,-337.253	0/1:71:35,36:35:1221:36:1288:-64.9422,0,-88.8175	0/0:108:108,0:108:3822:0:0:0,-32.5112,-344.139	0/0:46:46,0:46:1626:0:0:0,-13.8474,-146.627	0/1:74:34,40:34:1196:40:1436:-75.2033,0,-85.6664	0/1:86:51,35:51:1813:35:1251:-54.1131,0,-137.561	0/0:65:65,0:65:2274:0:0:0,-19.5669,-204.92	0/0:74:74,0:74:2621:0:0:0,-22.2762,-236.114	0/0:56:56,0:56:1956:0:0:0,-16.8577,-175.647	0/0:39:39,0:39:1345:0:0:0,-11.7402,-121.343	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.636	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:96:44,52:44:1572:52:1872:-97.8165,0,-112.822	0/0:85:85,0:85:3022:0:0:0,-25.5875,-272.188	0/1:57:13,44:13:443:44:1580:-97.5408,0,-22.7643	0/1:97:38,59:38:1360:59:2112:-118.221,0,-93.4783	0/0:54:54,0:54:1890:0:0:0,-16.2556,-170.352	0/0:32:32,0:32:1130:0:0:0,-9.63296,-102.007	0/0:209:208,1:208:7399:1:36:0,-59.317,-662.333	0/1:134:69,65:69:2458:65:2328:-113.681,0,-181.04	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2524	0/1:138:82,55:82:2906:55:1967:-97.3917,0,-220.147	0/1:103:50,53:50:1783:53:1882:-93.3049,0,-129.746	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.684	0/1:3:1,2:1:36:2:68:-4.30034,0,-2.69518	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.9785	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:182:182,0:182:6446:0:0:0,-54.7875,-580.176	0/0:58:58,0:58:2060:0:0:0,-17.4597,-185.672	0/0:45:45,0:45:1585:0:0:0,-13.5463,-142.938	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:90:49,41:49:1734:41:1476:-74.7812,0,-129.2	0/1:28:14,14:14:485:14:504:-24.5202,0,-35.5458	0/1:120:47,73:47:1676:73:2624:-143.949,0,-114.936	0/1:56:40,16:40:1420:16:572:-19.7863,0,-111.24	0/0:64:64,0:64:2230:0:0:0,-19.2659,-200.914	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:30:30,0:30:1058:0:0:0,-9.0309,-95.5296	0/1:117:52,65:52:1851:65:2327:-119.777,0,-131.626	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.386	0/0:152:152,0:152:5411:0:0:0,-45.7566,-487.056	0/0:100:100,0:100:3553:0:0:0,-30.103,-319.95	0/1:4:3,1:3:108:1:36:-0.687407,0,-8.84168	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:68:67,0:67:2387:0:0:0,-20.169,-214.727	0/1:5:3,2:3:108:2:72:-1.71473,0,-8.57002	0/1:126:74,52:74:2630:52:1872:-96.1021,0,-198.995	0/0:57:57,0:57:2014:0:0:0,-17.1587,-181.436	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:17:10,7:10:356:7:252:-13.7629,0,-27.2637	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.417	0/1:65:36,29:36:1287:29:1044:-54.6359,0,-96.521	1/1:4:0,4:0:0:4:144:-8.21321,-1.20412,0	0/0:149:149,0:149:5233:0:0:0,-44.8535,-471.11	0/1:108:57,51:57:2032:51:1828:-92.9075,0,-150.596	0/1:41:18,23:18:640:23:824:-44.6286,0,-45.5871	0/1:74:43,31:43:1519:31:1116:-53.841,0,-114.646	0/0:142:141,1:141:5022:1:36:0,-40.8547,-450.141	0/1:64:22,42:22:792:42:1497:-87.3667,0,-52.3173	0/0:29:27,2:27:959:2:72:0,-1.89315,-79.7887	0/1:19:11,8:11:396:8:284:-18.4467,0,-30.2632	0/1:35:19,16:19:680:16:567:-20.9307,0,-50.9706	0/1:28:24,4:24:864:4:144:-3.30604,0,-69.6313	0/0:55:53,0:53:1879:0:0:0,-15.9546,-169.029	0/0:116:116,0:116:4122:0:0:0,-34.9195,-371.166	0/0:145:144,1:144:5093:1:36:0,-40.0511,-454.867	0/0:110:110,0:110:3920:0:0:0,-33.1133,-352.966	0/1:65:30,35:30:1076:35:1260:-70.5627,0,-77.5855	0/0:118:118,0:118:4174:0:0:0,-35.5215,-375.812	0/1:13:8,5:8:288:5:176:-8.83055,0,-22.354	0/0:60:58,2:58:2067:2:72:0,-11.2251,-179.441	0/1:67:33,34:33:1153:34:1224:-66.1293,0,-83.4139	0/0:218:215,2:215:7615:2:72:0,-61.5826,-680.982	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/1:39:22,17:22:788:17:612:-32.1776,0,-59.5046	0/0:46:46,0:46:1620:0:0:0,-13.8474,-146.086	0/1:89:48,40:48:1712:40:1431:-62.9091,0,-127.515	0/1:7:5,2:5:180:2:72:-1.11267,0,-14.4449	0/0:68:68,0:68:2417:0:0:0,-20.47,-217.776	0/0:62:62,0:62:2195:0:0:0,-18.6639,-197.816	0/0:36:36,0:36:1254:0:0:0,-10.8371,-113.158	0/1:72:52,20:52:1812:20:720:-27.6004,0,-141.649	0/1:53:27,26:27:960:26:936:-44.5945,0,-70.6382	0/0:115:115,0:115:4077:0:0:0,-34.6184,-366.313	0/0:118:117,1:117:4104:1:36:0,-31.9233,-365.896
chr05	5885631	.	G	T	90693.8	PASS	AB=0.428676;ABP=123.815;AC=141;AF=0.758065;AN=186;AO=4490;CIGAR=1X;DP=6062;DPB=6062;DPRA=66.5934;EPP=9752.92;EPPR=3405.71;GTI=0;LEN=1;MEANALT=1.05495;MQM=58.4933;MQMR=59.9132;NS=93;NUMALT=1;ODDS=1.13138;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155884;QR=56111;RO=1567;RPL=4490;RPP=9752.92;RPPR=3405.71;RPR=0;RUN=1;SAF=0;SAP=9752.92;SAR=4490;SRF=0;SRP=3405.71;SRR=1567;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:23,10:23:824:10:345:-21.364,0,-64.5493	1/1:59:0,59:0:0:59:2013:-180.92,-17.7608,0	0/1:73:39,34:39:1404:34:1179:-84.3909,0,-104.663	1/1:152:0,152:0:0:152:5281:-475.265,-45.7566,0	1/1:23:0,23:0:0:23:775:-70.0444,-6.92369,0	1/1:31:0,31:0:0:31:1112:-100.341,-9.33193,0	0/1:68:30,38:30:1063:38:1318:-98.3984,0,-75.5092	1/1:59:0,59:0:0:59:2055:-184.995,-17.7608,0	0/1:105:58,47:58:2076:47:1662:-118.116,0,-155.49	1/1:87:1,86:1:36:86:2983:-265.035,-22.5913,0	1/1:45:1,44:1:36:44:1519:-133.313,-9.94808,0	0/1:67:28,39:28:1004:39:1400:-106.009,0,-70.5053	0/1:71:33,38:33:1188:38:1307:-96.4269,0,-85.8546	1/1:56:0,56:0:0:56:1977:-177.939,-16.8577,0	1/1:80:0,80:0:0:80:2750:-247.681,-24.0824,0	1/1:57:0,57:0:0:57:1975:-177.802,-17.1587,0	1/1:22:0,22:0:0:22:716:-64.7184,-6.62266,0	1/1:25:0,25:0:0:25:892:-80.4379,-7.52575,0	1/1:29:0,29:0:0:29:1006:-90.8075,-8.72987,0	0/1:67:47,20:47:1680:20:663:-39.437,0,-131.303	1/1:147:0,147:0:0:147:5044:-453.395,-44.2514,0	0/1:57:41,16:41:1476:16:557:-33.2615,0,-115.977	0/1:117:71,46:71:2535:46:1614:-110.168,0,-192.993	1/1:17:0,17:0:0:17:578:-52.3143,-5.11751,0	1/1:29:0,29:0:0:29:1025:-92.512,-8.72987,0	1/1:154:3,151:3:108:151:5223:-459.843,-36.2835,0	0/1:143:85,58:85:3039:58:2061:-142.634,0,-230.677	1/1:24:0,24:0:0:24:860:-77.6678,-7.22472,0	0/1:201:117,83:117:4181:83:2832:-194.481,0,-315.905	0/1:114:76,38:76:2719:38:1292:-82.2165,0,-210.633	1/1:80:0,80:0:0:80:2780:-250.181,-24.0824,0	0/1:7:5,2:5:180:2:72:-4.72867,0,-14.4449	1/1:18:0,18:0:0:18:618:-55.9318,-5.41854,0	0/1:3:1,2:1:36:2:72:-5.93038,0,-2.69518	1/1:2:0,2:0:0:2:64:-6.0774,-0.60206,0	0/1:6:1,5:1:36:5:180:-14.6717,0,-1.79209	1/1:148:0,148:0:0:148:5200:-468.071,-44.5524,0	1/1:56:0,56:0:0:56:1948:-175.386,-16.8577,0	1/1:40:0,40:0:0:40:1394:-125.461,-12.0412,0	.:.:.:.:.:.:.:.	0/1:105:53,52:53:1895:52:1811:-131.548,0,-139.218	0/1:29:18,11:18:648:11:366:-24.3498,0,-49.922	0/1:108:77,31:77:2748:31:1081:-64.873,0,-215.05	0/1:44:10,34:10:352:34:1201:-95.1199,0,-18.7713	1/1:41:0,41:0:0:41:1422:-128.23,-12.3422,0	1/1:46:0,46:0:0:46:1614:-145.51,-13.8474,0	1/1:62:0,62:0:0:62:2174:-195.673,-18.6639,0	0/1:124:79,45:79:2832:45:1570:-104.247,0,-217.791	1/1:39:0,39:0:0:39:1350:-121.794,-11.7402,0	1/1:67:0,67:0:0:67:2335:-210.333,-20.169,0	1/1:22:0,22:0:0:22:758:-68.5165,-6.62266,0	0/1:5:2,3:2:72:3:89:-6.79921,0,-5.33157	1/1:60:0,59:0:0:59:2036:-183.067,-17.7608,0	1/1:40:0,40:0:0:40:1403:-126.532,-12.0412,0	0/1:8:4,4:4:144:4:140:-10.4611,0,-10.9054	0/1:93:47,46:47:1680:46:1632:-119.067,0,-123.488	1/1:21:0,21:0:0:21:722:-65.2381,-6.32163,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:18:12,6:12:432:6:193:-12.2671,0,-33.8027	1/1:42:0,42:0:0:42:1485:-133.775,-12.6433,0	0/1:79:45,34:45:1611:34:1212:-85.2172,0,-121.498	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:175:0,175:0:0:175:6001:-539.7,-52.6803,0	0/1:127:81,46:81:2900:46:1610:-106.828,0,-223.005	0/1:39:13,26:13:464:26:890:-68.6605,0,-30.3573	0/1:70:38,32:38:1360:32:1083:-76.6943,0,-101.628	1/1:101:0,101:0:0:101:3467:-312.117,-30.404,0	0/1:87:56,31:56:2008:31:1093:-72.4774,0,-154.804	0/1:36:8,28:8:288:28:868:-67.3306,0,-15.4303	0/1:56:21,35:21:756:35:1229:-93.9749,0,-51.5095	0/1:29:20,9:20:716:9:316:-20.0312,0,-56.0374	0/1:21:15,6:15:536:6:201:-12.0954,0,-42.2532	1/1:75:0,75:0:0:75:2622:-236.049,-22.5773,0	1/1:68:0,68:0:0:68:2322:-208.064,-20.47,0	1/1:91:0,91:0:0:91:3168:-285.25,-27.3937,0	1/1:174:0,174:0:0:174:5945:-534.313,-52.3792,0	0/1:63:48,14:48:1724:14:436:-20.5141,0,-136.433	1/1:99:1,98:1:36:98:3445:-306.103,-26.2037,0	0/1:23:15,8:15:536:8:288:-19.3312,0,-41.6496	1/1:71:0,71:0:0:71:2456:-221.104,-21.3731,0	0/1:91:55,36:55:1976:36:1232:-83.6261,0,-150.721	1/1:173:0,173:0:0:173:6041:-543.764,-52.0782,0	1/1:35:0,35:0:0:35:1232:-111.159,-10.5361,0	0/1:101:43,57:43:1540:57:2015:-151,0,-108.43	1/1:51:0,51:0:0:51:1831:-164.989,-15.3525,0	0/1:76:40,36:40:1432:36:1269:-91.5059,0,-106.299	0/1:22:16,6:16:572:6:216:-13.1584,0,-45.1908	1/1:53:0,53:0:0:53:1858:-167.422,-15.9546,0	1/1:62:0,62:0:0:62:2185:-196.732,-18.6639,0	1/1:26:0,26:0:0:26:849:-76.6648,-7.82678,0	0/1:82:50,32:50:1792:32:1109:-75.3282,0,-136.877	0/1:66:38,28:38:1368:28:969:-67.6512,0,-103.553	1/1:99:0,98:0:0:98:3443:-309.717,-29.5009,0	1/1:93:0,93:0:0:93:3259:-293.321,-27.9958,0
chr05	5899182	.	T	C	34990.5	PASS	AB=0.530096;ABP=33.4642;AC=40;AF=0.217391;AN=184;AO=2057;CIGAR=1X;DP=9880;DPB=9880;DPRA=0.991027;EPP=4461.05;EPPR=16840.8;GTI=1;LEN=1;MEANALT=1.22727;MQM=59.9883;MQMR=59.9962;NS=92;NUMALT=1;ODDS=1.05079;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73081;QR=279532;RO=7806;RPL=2056;RPP=4461.05;RPPR=16840.8;RPR=1;RUN=1;SAF=2057;SAP=4469.73;SAR=0;SRF=7806;SRP=16953.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:40,17:40:1432:17:612:-38.2547,0,-112.019	0/0:205:205,0:205:7344:0:0:0,-61.7111,-661.008	0/1:143:74,69:74:2660:69:2410:-174.106,0,-196.598	0/0:322:322,0:322:11520:0:0:0,-96.9317,-1036.67	0/0:43:42,1:42:1508:1:36:0,-9.34601,-132.416	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:123:46,77:46:1648:77:2731:-209.007,0,-111.582	0/0:186:186,0:186:6672:0:0:0,-55.9916,-600.555	0/1:113:73,38:73:2616:38:1360:-88.9265,0,-201.914	0/0:179:179,0:179:6404:0:0:0,-53.8844,-576.438	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:42:23,19:23:820:19:684:-49.2471,0,-61.4793	0/1:33:22,11:22:792:11:392:-25.6861,0,-61.6717	0/1:30:19,11:19:680:11:396:-26.9518,0,-52.4983	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:228:106,122:106:3796:122:4319:-320.253,0,-273.203	0/0:163:163,0:163:5820:0:0:0,-49.0679,-523.915	0/1:287:83,203:83:2938:203:7175:-559.355,0,-178.198	0/1:122:66,54:66:2372:54:1923:-136.863,0,-177.254	0/0:215:215,0:215:7704:0:0:0,-64.7214,-693.393	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:514:512,2:512:18322:2:72:0,-147.893,-1641.73	0/1:148:56,92:56:2004:92:3276:-250.506,0,-136.081	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.023	0/1:292:144,148:144:5168:148:5274:-386.897,0,-377.358	0/1:155:91,64:91:3260:64:2235:-154.74,0,-246.961	0/0:197:196,0:196:7032:0:0:0,-59.0019,-632.58	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:160:160,0:160:5728:0:0:0,-48.1648,-515.637	0/0:236:236,0:236:8468:0:0:0,-71.0431,-762.119	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	.:.:.:.:.:.:.:.	0/1:190:117,71:117:4208:71:2552:-172.977,0,-321.945	0/1:15:6,9:6:216:9:311:-23.8083,0,-15.2751	0/1:210:83,127:83:2976:127:4498:-341.774,0,-204.856	0/1:51:31,20:31:1112:20:712:-49.0541,0,-85.0388	0/0:60:60,0:60:2136:0:0:0,-18.0618,-192.508	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:200:200,0:200:7176:0:0:0,-60.206,-645.894	0/1:174:62,112:62:2224:112:3972:-305.293,0,-148.045	0/0:175:174,0:174:6232:0:0:0,-52.3792,-560.615	0/0:133:133,0:133:4741:0:0:0,-40.037,-426.849	0/0:166:166,0:166:5940:0:0:0,-49.971,-534.708	.:.:.:.:.:.:.:.	0/0:147:147,0:147:5276:0:0:0,-44.2514,-474.974	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:138:64,73:64:2300:73:2607:-193.425,0,-165.807	0/0:62:61,1:61:2172:1:36:0,-15.0656,-192.149	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:67:32,34:32:1144:34:1205:-88.5262,0,-83.0418	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:296:296,0:296:10554:0:0:0,-89.1049,-949.777	0/1:202:80,122:80:2852:122:4352:-331.046,0,-196.111	0/1:98:41,57:41:1476:57:2024:-152.931,0,-103.635	0/1:81:36,44:36:1280:44:1576:-117.689,0,-91.0611	0/0:213:212,1:212:7584:1:36:0,-60.5211,-679.001	0/1:173:51,122:51:1824:122:4342:-338.877,0,-112.363	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:91:56,35:56:1992:35:1238:-84.3297,0,-152.16	0/1:65:27,37:27:972:37:1328:-100.197,0,-68.1722	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:199:199,0:199:7109:0:0:0,-59.905,-639.869	0/0:200:200,0:200:7168:0:0:0,-60.206,-645.175	0/1:155:63,92:63:2245:92:3274:-248.221,0,-155.652	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.14	0/1:8:6,2:6:216:2:63:-3.57491,0,-17.3823	0/0:120:120,0:120:4316:0:0:0,-36.1236,-388.614	0/1:104:65,39:65:2332:39:1393:-94.3616,0,-178.832	0/0:276:276,0:276:9896:0:0:0,-83.0843,-890.579	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/1:36:23,13:23:819:13:453:-30.2634,0,-63.1945	0/0:64:63,0:63:2256:0:0:0,-18.9649,-202.943	0/1:86:47,38:47:1684:38:1351:-95.9423,0,-125.9	0/1:29:15,14:15:540:14:500:-36.6063,0,-40.2067	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:10:9,0:9:324:0:0:0,-2.70927,-29.146	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:48:14,33:14:500:33:1179:-91.9091,0,-30.8281	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182
chr05	5899337	.	GAAT	AAAT,AAAC	151298	PASS	AB=0.375591,0.623019;ABP=486.581,475.835;AC=139,49;AF=0.739362,0.260638;AN=188;AO=5175,2258;CIGAR=1X3M,1X2M1X;DP=7445;DPB=7446.5;DPRA=22.0148,1.05323;EPP=11240.4,4906.2;EPPR=0;GTI=3;LEN=1,4;MEANALT=1.6,2;MQM=59.909,33.372;MQMR=0;NS=94;NUMALT=2;ODDS=1.19777;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=72,72;PQR=0;PRO=0;QA=185610,79758;QR=0;RO=0;RPL=5175,2258;RPP=11240.4,4906.2;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=11240.4,4906.2;SAR=5175,2258;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:73:0,22,51:0:0:22,51:788,1804:-183.104,-118.82,-112.197,-64.6221,0,-49.2696	1/1:57:0,57,0:0:0:57,0:2025,0:-182.517,-17.1587,0,-182.517,-17.1587,-182.517	1/2:167:0,71,95:0:0:71,95:2544,3375:-427.608,-220.1,-198.727,-207.626,0,-179.028	1/1:148:0,148,0:0:0:148,0:5308,0:-477.731,-44.5524,0,-477.731,-44.5524,-477.731	1/1:53:0,53,0:0:0:53,0:1908,0:-171.998,-15.9546,0,-171.998,-15.9546,-171.998	1/1:61:0,61,0:0:0:61,0:2196,0:-197.903,-18.3628,0,-197.903,-18.3628,-197.903	1/2:96:0,67,29:0:0:67,29:2408,1037:-270.801,-74.3237,-54.1547,-196.807,0,-188.077	1/1:84:0,83,1:0:0:83,1:2977,36:-267.854,-24.9855,0,-265.473,-22.3058,-265.172	1/2:84:0,43,41:0:0:43,41:1544,1453:-220.731,-94.7455,-81.8012,-126.309,0,-113.967	1/1:64:0,64,0:0:0:64,0:2280,0:-205.448,-19.2659,0,-205.448,-19.2659,-205.448	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:54:0,34,20:0:0:34,20:1220,695:-145.483,-45.9248,-35.6898,-99.8718,0,-93.8512	1/2:50:0,29,21:0:0:29,21:1044,747:-135.074,-49.8515,-41.1216,-85.5449,0,-79.2233	1/2:33:0,14,19:0:0:14,19:500,662:-85.713,-44.9217,-40.7073,-41.1218,0,-35.4022	1/1:45:0,45,0:0:0:45,0:1616,0:-145.73,-13.5464,0,-145.73,-13.5464,-145.73	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:20:0,20,0:0:0:20,0:696,0:-62.9587,-6.0206,0,-62.9587,-6.0206,-62.9587	1/2:212:0,88,124:0:0:88,124:3152,4353:-570.004,-312.929,-286.438,-257.414,0,-220.087	1/1:154:0,153,0:0:0:153,0:5480,0:-493.05,-46.0576,0,-493.05,-46.0576,-493.05	1/2:146:0,34,111:0:0:34,111:1224,3908:-393.059,-293.179,-282.944,-99.9353,0,-66.521	1/2:154:0,48,106:0:0:48,106:1724,3693:-407.234,-266.597,-252.147,-140.982,0,-109.073	1/1:55:0,55,0:0:0:55,0:1976,0:-178.115,-16.5567,0,-178.115,-16.5567,-178.115	1/1:100:0,100,0:0:0:100,0:3591,0:-323.345,-30.103,0,-323.345,-30.103,-323.345	1/1:228:0,227,0:0:0:227,0:8136,0:-731.894,-68.3338,0,-731.894,-68.3338,-731.894	1/2:268:0,105,163:0:0:105,163:3764,5783:-709.843,-402.842,-371.233,-307.34,0,-258.272	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:245:0,76,169:0:0:76,169:2732,6002:-671.342,-448.448,-425.57,-223.244,0,-172.37	1/2:102:0,52,50:0:0:52,50:1859,1756:-275.114,-123.781,-108.127,-151.665,0,-136.614	1/1:108:0,108,0:0:0:108,0:3863,0:-347.608,-32.5112,0,-347.608,-32.5112,-347.608	1/2:3:0,1,2:0:0:1,2:36,72:-8.28609,-5.33285,-5.03182,-3.29724,0,-2.69518	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	2/2:7:0,0,7:0:0:0,7:0,251:-19.0529,-19.0529,-19.0529,-2.10721,-2.10721,0	1/1:10:0,10,0:0:0:10,0:360,0:-32.7439,-3.0103,0,-32.7439,-3.0103,-32.7439	1/2:17:0,3,14:0:0:3,14:108,489:-41.6292,-32.8049,-31.9018,-9.17208,0,-4.95766	1/1:124:0,124,0:0:0:124,0:4460,0:-401.568,-37.3277,0,-401.568,-37.3277,-401.568	1/1:164:0,164,0:0:0:164,0:5896,0:-530.738,-49.3689,0,-530.738,-49.3689,-530.738	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	2/2:1:0,0,1:0:0:0,1:0,35:-3.08764,-3.08764,-3.08764,-0.30103,-0.30103,0	1/2:87:0,22,65:0:0:22,65:788,2309:-224.76,-160.492,-153.869,-64.6139,0,-45.047	1/2:14:0,8,6:0:0:8,6:288,216:-38.7707,-15.2428,-12.8346,-23.8592,0,-22.053	1/2:180:0,64,116:0:0:64,116:2300,4106:-474.933,-287.279,-268.013,-187.995,0,-153.075	1/2:30:0,17,13:0:0:17,13:612,468:-84.3473,-34.3913,-29.2738,-50.2959,0,-46.3825	1/1:38:0,38,0:0:0:38,0:1368,0:-123.415,-11.4391,0,-123.415,-11.4391,-123.415	1/1:108:0,108,0:0:0:108,0:3884,0:-349.753,-32.5112,0,-349.753,-32.5112,-349.753	1/1:123:0,123,0:0:0:123,0:4404,0:-396.532,-37.0267,0,-396.532,-37.0267,-396.532	1/2:204:0,55,149:0:0:55,149:1972,5235:-542.068,-381.217,-364.661,-161.198,0,-116.345	1/1:61:0,61,0:0:0:61,0:2196,0:-197.905,-18.3628,0,-197.905,-18.3628,-197.905	1/1:75:0,75,0:0:0:75,0:2696,0:-242.883,-22.5773,0,-242.883,-22.5773,-242.883	1/1:119:0,118,0:0:0:118,0:4238,0:-381.325,-35.5215,0,-381.325,-35.5215,-381.325	1/2:12:0,2,10:0:0:2,10:72,349:-31.5635,-25.6813,-25.0792,-6.23466,0,-3.22436	1/1:91:0,91,0:0:0:91,0:3260,0:-293.617,-27.3937,0,-293.617,-27.3937,-293.617	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/2:4:0,2,2:0:0:2,2:72,72:-10.9219,-5.03128,-4.42922,-6.20457,0,-5.60251	1/2:142:0,46,96:0:0:46,96:1652,3358:-367.678,-232.898,-219.05,-135.121,0,-106.222	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	2/2:4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chr05	5914895	.	C	T	217471	PASS	AB=0.439473;ABP=234.858;AC=142;AF=0.755319;AN=188;AO=11448;CIGAR=1X;DP=15560;DPB=15560;DPRA=0;EPP=24862;EPPR=8925.59;GTI=0;LEN=1;MEANALT=1.03191;MQM=35.2276;MQMR=44.8128;NS=94;NUMALT=1;ODDS=1.21499;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=409063;QR=146012;RO=4109;RPL=7628;RPP=2753.55;RPPR=229.736;RPR=3820;RUN=1;SAF=7628;SAP=2753.55;SAR=3820;SRF=2382;SRP=229.736;SRR=1727;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:36,23:36:1273:23:828:-33.7726,0,-90.6243	1/1:108:0,107:0:0:107:3808:-228.737,-32.2102,0	0/1:228:112,116:112:3961:116:4164:-179.879,0,-265.482	1/1:438:0,438:0:0:438:15651:-1202.87,-131.851,0	1/1:34:0,34:0:0:34:1224:-85.9983,-10.235,0	1/1:31:0,31:0:0:31:1096:-78.2771,-9.33193,0	0/1:212:101,111:101:3616:111:3971:-239.998,0,-251.98	1/1:206:0,206:0:0:206:7339:-447.151,-62.0122,0	0/1:185:116,69:116:4119:69:2464:-92.0073,0,-295.694	1/1:181:0,181:0:0:181:6446:-475.625,-54.4864,0	1/1:131:0,130:0:0:130:4655:-309.429,-39.1339,0	0/1:179:113,66:113:3993:66:2356:-86.7238,0,-288.066	0/1:163:109,54:109:3847:54:1936:-66.456,0,-278.33	0/1:183:99,84:99:3499:84:2970:-118.347,0,-235.885	1/1:154:0,154:0:0:154:5490:-387.963,-46.3586,0	1/1:131:0,131:0:0:131:4679:-269.884,-39.4349,0	1/1:83:1,82:1:36:82:2925:-171.621,-21.4269,0	1/1:44:2,42:2:72:42:1500:-84.5993,-6.74311,0	1/1:41:0,41:0:0:41:1464:-87.9637,-12.3422,0	0/1:280:140,140:140:4993:140:5000:-299.915,0,-331.755	1/1:247:1,246:1:32:246:8784:-505.584,-71.1551,0	0/1:122:72,50:72:2552:50:1791:-91.5649,0,-179.79	0/1:213:111,102:111:3946:102:3613:-205.653,0,-274.586	1/1:44:0,44:0:0:44:1580:-92.1646,-13.2453,0	1/1:79:1,78:1:36:78:2800:-169.06,-20.5352,0	1/1:552:0,552:0:0:552:19744:-1409,-166.169,0	0/1:322:203,119:203:7244:119:4253:-148.036,0,-514.787	1/1:37:0,37:0:0:37:1332:-76.4248,-11.1381,0	0/1:534:260,274:260:9193:274:9756:-585.87,0,-610.763	0/1:168:101,67:101:3613:67:2404:-88.0791,0,-254.716	1/1:231:0,231:0:0:231:8267:-591.724,-69.5379,0	0/1:19:11,8:11:381:8:288:-10.9161,0,-27.3005	1/1:32:0,32:0:0:32:1144:-65.9758,-9.63296,0	0/1:23:13,10:13:468:10:351:-15.4246,0,-30.9085	1/1:8:0,8:0:0:8:284:-17.6463,-2.40824,0	0/1:22:7,15:7:252:15:518:-25.4193,0,-14.1528	1/1:409:0,409:0:0:409:14647:-1082.14,-123.121,0	1/1:98:3,95:3:108:95:3401:-189.099,-20.4117,0	1/1:80:0,80:0:0:80:2864:-171.229,-24.0824,0	0/1:5:2,3:2:72:3:108:-4.87567,0,-4.66255	0/1:211:148,63:148:5265:63:2260:-66.2705,0,-380.624	0/1:56:37,19:37:1324:19:675:-22.0503,0,-94.7463	0/1:214:127,87:127:4532:87:3116:-126.396,0,-318.713	0/1:154:87,67:87:3120:67:2408:-129.32,0,-213.232	1/1:134:0,134:0:0:134:4777:-358.459,-40.338,0	1/1:188:0,188:0:0:188:6736:-501.84,-56.5936,0	1/1:119:0,119:0:0:119:4267:-257.027,-35.8226,0	0/1:325:177,148:177:6297:148:5274:-267.413,0,-428.921	1/1:186:0,186:0:0:186:6629:-496.985,-55.9916,0	1/1:287:1,285:1:36:285:10220:-708.513,-83.1788,0	1/1:207:0,207:0:0:207:7398:-598.23,-62.3132,0	0/1:10:4,6:4:144:6:216:-9.52346,0,-9.16376	1/1:116:1,115:1:36:115:4117:-245.212,-31.6733,0	1/1:178:0,178:0:0:178:6383:-481.612,-53.5833,0	0/1:15:7,8:7:252:8:284:-12.7774,0,-16.5819	0/1:280:176,104:176:6231:104:3728:-131.785,0,-441.127	1/1:89:0,89:0:0:89:3169:-223.813,-26.7917,0	0/1:22:12,10:12:428:10:360:-15.7319,0,-28.8493	0/1:21:10,11:10:360:11:396:-22.2895,0,-24.5542	1/1:147:0,147:0:0:147:5238:-303.823,-44.2514,0	0/1:210:115,95:115:4108:95:3404:-181.304,0,-276.904	0/1:25:12,13:12:432:13:468:-19.3649,0,-28.0185	0/1:349:156,193:156:5537:193:6853:-418.375,0,-359.997	0/1:422:225,197:225:8009:197:7059:-377.67,0,-542.492	0/1:120:76,44:76:2693:44:1571:-54.3784,0,-193.144	0/1:228:118,110:118:4213:110:3947:-210.814,0,-282.148	1/1:435:3,432:3:108:432:15484:-1058.2,-121.639,0	0/1:185:140,45:140:5016:45:1603:-63.8659,0,-362.983	0/1:100:67,33:67:2387:33:1167:-38.4895,0,-166.998	0/1:50:22,28:22:769:28:996:-44.898,0,-50.0433	0/1:97:38,59:38:1345:59:2120:-122.723,0,-81.9499	0/1:50:28,22:28:1008:22:792:-48.1999,0,-67.5823	1/1:98:0,98:0:0:98:3516:-211.87,-29.5009,0	1/1:139:1,138:1:36:138:4951:-292.108,-38.2449,0	1/1:209:0,209:0:0:209:7452:-437.713,-62.9153,0	1/1:345:0,345:0:0:345:12339:-878.803,-103.855,0	0/1:114:47,67:47:1665:67:2392:-120.222,0,-105.862	1/1:167:4,163:4:144:163:5842:-335.724,-36.9584,0	0/1:32:21,11:21:748:11:396:-14.1023,0,-53.0813	1/1:161:1,160:1:32:160:5710:-326.532,-45.2665,0	0/1:224:142,82:142:5059:82:2906:-107.044,0,-355.757	1/1:572:4,568:4:125:568:20229:-1568.78,-160.72,0	1/1:130:0,130:0:0:130:4632:-348.543,-39.1339,0	0/1:165:87,78:87:3067:78:2786:-162.392,0,-203.829	1/1:109:0,109:0:0:109:3878:-285.717,-32.8123,0	0/1:283:135,148:135:4753:148:5296:-307.09,0,-314.675	0/1:34:26,8:26:932:8:288:-7.09175,0,-67.9788	1/1:98:0,98:0:0:98:3503:-211.603,-29.5009,0	1/1:101:0,101:0:0:101:3620:-216.146,-30.404,0	1/1:103:0,103:0:0:103:3660:-212.824,-31.0061,0	0/1:212:122,90:122:4312:90:3215:-123.059,0,-295.431	0/1:161:116,45:116:4111:45:1612:-64.906,0,-302.021	1/1:280:0,280:0:0:280:10000:-748.78,-84.2884,0	1/1:277:2,275:2:72:275:9830:-735.985,-76.5511,0
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chr05	6474446	.	G	A	22659.5	PASS	AB=0.53062;ABP=23.2237;AC=44;AF=0.234043;AN=188;AO=1318;CIGAR=1X;DP=5738;DPB=5738;DPRA=0.941015;EPP=2847.67;EPPR=9564.02;GTI=1;LEN=1;MEANALT=1.02222;MQM=59.9886;MQMR=59.9839;NS=94;NUMALT=1;ODDS=2.11374;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47181;QR=157447;RO=4415;RPL=2;RPP=2847.67;RPPR=9564.02;RPR=1316;RUN=1;SAF=1318;SAP=2865.01;SAR=0;SRF=4415;SRP=9590.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:18,6:18:639:6:216:-12.5658,0,-50.6135	0/0:72:71,0:71:2539:0:0:0,-21.3731,-228.401	0/1:61:22,39:22:775:39:1400:-107.936,0,-51.7084	0/0:76:76,0:76:2696:0:0:0,-22.8783,-242.883	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/1:80:36,44:36:1292:44:1565:-117.057,0,-92.5014	0/0:69:68,0:68:2448:0:0:0,-20.47,-220.214	0/1:136:78,58:78:2779:58:2076:-146.17,0,-209.411	0/0:67:66,0:66:2351:0:0:0,-19.868,-211.489	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/1:47:20,27:20:698:27:972:-73.6495,0,-48.993	0/1:51:29,22:29:1040:22:792:-56.2531,0,-78.5618	0/1:179:97,82:97:3450:82:2921:-209.24,0,-256.829	0/0:25:25,0:25:878:0:0:0,-7.52575,-79.3359	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.756	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/1:76:37,39:37:1316:39:1385:-102.068,0,-95.8635	0/0:88:88,0:88:3130:0:0:0,-26.4906,-281.926	0/1:36:12,24:12:432:24:864:-67.2455,0,-28.3841	0/1:103:59,44:59:2098:44:1566:-110.224,0,-158.082	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:221:221,0:221:7859:0:0:0,-66.5276,-707.341	0/1:109:49,60:49:1742:60:2145:-160.503,0,-124.25	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:108:47,61:47:1688:61:2192:-165.034,0,-119.696	0/1:83:31,52:31:1108:52:1856:-142.333,0,-75.0455	0/0:178:176,1:176:6304:1:36:0,-50.0439,-563.768	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:128:128,0:128:4543:0:0:0,-38.5318,-409.04	0/0:86:86,0:86:3060:0:0:0,-25.8886,-275.631	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5355	0/1:54:24,30:24:855:30:1076:-80.8972,0,-61.0146	0/1:28:12,16:12:428:16:576:-43.7461,0,-30.43	0/1:69:31,38:31:1104:38:1360:-101.93,0,-78.8996	0/1:47:23,24:23:815:24:852:-62.852,0,-59.5224	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:66:66,0:66:2339:0:0:0,-19.868,-210.77	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/1:100:41,59:41:1468:59:2116:-160.606,0,-102.313	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/0:89:89,0:89:3175:0:0:0,-26.7917,-285.974	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:68:30,38:30:1063:38:1364:-102.591,0,-75.5108	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:51:51,0:51:1810:0:0:0,-15.3525,-163.18	0/1:74:32,42:32:1140:42:1512:-114.098,0,-80.633	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:111:52,59:52:1868:59:2124:-158.014,0,-134.985	0/1:109:47,62:47:1672:62:2216:-166.892,0,-117.955	0/1:60:29,31:29:1040:31:1116:-82.6899,0,-75.8526	0/1:31:18,13:18:640:13:449:-31.4056,0,-48.5974	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/1:60:16,44:16:563:44:1569:-123.439,0,-32.9374	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:39:17,22:17:595:22:773:-58.1493,0,-42.1347	0/1:47:18,29:18:648:29:1044:-80.1264,0,-44.5035	0/1:7:5,2:5:176:2:68:-4.3505,0,-14.0778	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:51:51,0:51:1802:0:0:0,-15.3525,-162.46	0/0:355:354,0:354:12622:0:0:0,-106.565,-1135.02	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.817	0/1:57:24,33:24:852:33:1188:-90.0699,0,-59.8417	0/0:45:45,0:45:1591:0:0:0,-13.5463,-143.48	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:41:30,11:30:1068:11:392:-23.2778,0,-84.0898	0/0:96:96,0:96:3431:0:0:0,-28.8989,-309.003	0/0:57:57,0:57:2009:0:0:0,-17.1587,-181.08	0/1:35:13,22:13:464:22:792:-61.0696,0,-31.5615	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.849	0/1:115:62,53:62:2207:53:1904:-137.019,0,-164.276	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:56:17,39:17:612:39:1400:-109.442,0,-38.5558	0/1:77:30,47:30:1076:47:1684:-128.668,0,-73.9735	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.414
chr05	6577880	.	GTCTT	GTCGT,ATCGT	167746	PASS	AB=0.454098,0.5404;ABP=66.2044,51.9618;AC=139,49;AF=0.739362,0.260638;AN=188;AO=5906,1898;CIGAR=3M1X1M,1X2M1X1M;DP=7856;DPB=7855.8;DPRA=15.2017,0.94356;EPP=12793,4115.78;EPPR=9.52472;GTI=2;LEN=1,5;MEANALT=2.03297,2.38889;MQM=59.458,59.8846;MQMR=60;NS=94;NUMALT=2;ODDS=2.63664;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=210509,66592;QR=79;RO=3;RPL=4,1;RPP=12793,4115.78;RPPR=9.52472;RPR=5902,1897;RUN=1,1;SAF=0,0;SAP=12827.7,4124.46;SAR=5906,1898;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,17,15:0:0:17,15:608,518:-92.0111,-42.4299,-37.3124,-49.9322,0,-45.4167	1/1:147:0,143,3:0:0:143,3:5138,108:-461.842,-43.0473,0,-453.061,-34.207,-452.158	1/2:76:0,39,37:0:0:39,37:1404,1286:-219.423,-104.9,-93.16,-114.876,0,-103.738	1/1:132:0,131,1:0:0:131,1:4676,29:-420.358,-39.4349,0,-418.05,-36.8363,-417.749	1/1:58:0,58,0:0:0:58,0:2080,0:-187.469,-17.4597,0,-187.469,-17.4597,-187.469	1/1:36:0,36,0:0:0:36,0:1280,0:-115.443,-10.8371,0,-115.443,-10.8371,-115.443	1/2:74:0,24,50:0:0:24,50:860,1762:-213.95,-143.809,-136.585,-70.4971,0,-55.4456	1/1:123:0,123,0:0:0:123,0:4395,0:-395.67,-37.0267,0,-395.67,-37.0267,-395.67	1/2:77:0,38,38:0:0:38,38:1368,1345:-221.213,-109.617,-98.1777,-111.661,0,-100.221	1/1:75:0,74,1:0:0:74,1:2660,36:-239.216,-22.2762,0,-236.279,-18.979,-235.977	1/1:108:0,107,0:0:0:107,0:3812,0:-342.877,-32.2102,0,-342.877,-32.2102,-342.877	1/2:62:0,32,29:0:0:32,29:1139,1015:-175.408,-82.6385,-73.0055,-92.8394,0,-84.1095	1/2:59:0,34,25:0:0:34,25:1220,890:-172.372,-72.8941,-62.6591,-99.835,0,-92.3093	1/2:75:0,33,42:0:0:33,42:1153,1443:-211.274,-117.485,-107.551,-94.1357,0,-81.4924	1/1:71:0,71,0:0:0:71,0:2543,0:-229.108,-21.3731,0,-229.108,-21.3731,-229.108	1/1:67:0,67,0:0:0:67,0:2400,0:-216.213,-20.169,0,-216.213,-20.169,-216.213	1/1:73:0,73,0:0:0:73,0:2610,0:-234.8,-21.9752,0,-234.8,-21.9752,-234.8	1/1:69:0,69,0:0:0:69,0:2476,0:-222.868,-20.7711,0,-222.868,-20.7711,-222.868	1/1:74:0,74,0:0:0:74,0:2615,0:-235.497,-22.2762,0,-235.497,-22.2762,-235.497	1/2:189:0,93,95:0:0:93,95:3314,3319:-540.013,-270.082,-242.086,-270.032,0,-241.434	1/1:128:0,126,0:0:0:126,0:4506,0:-405.376,-37.9298,0,-405.376,-37.9298,-405.376	1/2:77:0,27,50:0:0:27,50:942,1756:-219.558,-143.27,-135.142,-76.6366,0,-61.5851	1/2:33:0,16,17:0:0:16,17:576,598:-96.0268,-49.0303,-44.2138,-47.3523,0,-42.2348	1/1:80:0,80,0:0:0:80,0:2823,0:-254.037,-24.0824,0,-254.037,-24.0824,-254.037	1/1:58:0,58,0:0:0:58,0:2036,0:-183.28,-17.4597,0,-183.28,-17.4597,-183.28	1/1:207:0,201,0:0:0:201,0:7119,0:-640.363,-60.507,0,-640.363,-60.507,-640.363	1/2:173:0,84,89:0:0:84,89:3012,3115:-499.39,-253.78,-228.494,-245.964,0,-219.173	1/1:47:0,47,0:0:0:47,0:1688,0:-152.175,-14.1484,0,-152.175,-14.1484,-152.175	1/2:199:0,91,108:0:0:91,108:3236,3806:-573.932,-310.23,-282.837,-264.055,0,-231.544	1/2:175:0,89,86:0:0:89,86:3154,3015:-502.311,-245.694,-218.903,-256.969,0,-231.081	1/1:112:0,112,0:0:0:112,0:4011,0:-361.13,-33.7154,0,-361.13,-33.7154,-361.13	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/1:15:0,15,0:0:0:15,0:536,0:-48.5534,-4.51545,0,-48.5534,-4.51545,-48.5534	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:18:0,18,0:0:0:18,0:648,0:-58.6327,-5.41854,0,-58.6327,-5.41854,-58.6327	1/2:7:0,6,1:0:0:6,1:216,36:-20.9217,-3.29724,-1.49106,-17.9843,0,-17.6833	1/1:250:0,249,0:0:0:249,0:8837,0:-795.014,-74.9565,0,-795.014,-74.9565,-795.014	1/1:138:0,134,2:0:0:134,2:4778,72:-429.801,-40.338,0,-423.926,-34.4304,-423.324	1/1:98:0,96,0:0:0:96,0:3425,0:-308.091,-28.8989,0,-308.091,-28.8989,-308.091	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/2:90:0,48,41:0:0:48,41:1724,1450:-258.744,-118.15,-103.701,-140.648,0,-128.306	1/2:44:0,26,18:0:0:26,18:936,629:-127.845,-51.5168,-43.6901,-76.6819,0,-71.2633	1/2:96:0,43,53:0:0:43,53:1540,1842:-275.637,-150.102,-137.157,-125.889,0,-109.934	1/2:93:0,45,48:0:0:45,48:1603,1687:-268.155,-137.666,-124.119,-130.842,0,-116.393	1/1:75:0,74,0:0:0:74,0:2627,0:-236.423,-22.2762,0,-236.423,-22.2762,-236.423	1/1:117:0,116,0:0:0:116,0:4153,0:-373.679,-34.9195,0,-373.679,-34.9195,-373.679	1/1:101:0,101,0:0:0:101,0:3567,0:-321.092,-30.404,0,-321.092,-30.404,-321.092	1/2:114:0,44,70:0:0:44,70:1571,2460:-328.658,-200.583,-187.338,-128.429,0,-107.357	1/1:80:0,80,0:0:0:80,0:2832,0:-254.953,-24.0824,0,-254.953,-24.0824,-254.953	1/1:80:0,80,0:0:0:80,0:2855,0:-257.169,-24.0824,0,-257.169,-24.0824,-257.169	1/1:152:0,151,0:0:0:151,0:5362,0:-482.359,-45.4555,0,-482.359,-45.4555,-482.359	1/2:10:0,4,6:0:0:4,6:144,216:-29.734,-17.9843,-16.7802,-12.1095,0,-10.3033	1/1:98:0,97,0:0:0:97,0:3484,0:-313.384,-29.1999,0,-313.384,-29.1999,-313.384	1/1:33:0,29,0:0:0:29,0:1040,0:-93.5517,-8.72987,0,-93.5517,-8.72987,-93.5517	2/2:9:0,0,9:0:0:0,9:0,320:-29.1424,-29.1424,-29.1424,-2.70927,-2.70927,0	1/2:92:0,35,56:0:0:35,56:1251,1926:-258.263,-156.483,-145.947,-101.858,0,-85.0006	1/1:32:0,32,0:0:0:32,0:1148,0:-103.605,-9.63296,0,-103.605,-9.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chr05	6577907	.	GCTATT	TCCATC,TCTATT	167967	PASS	AB=0.457391,0.537681;ABP=57.4142,45.5586;AC=139,49;AF=0.739362,0.260638;AN=188;AO=5975,1883;CIGAR=1X1M1X2M1X,1X5M;DP=7892;DPB=7892;DPRA=15.2715,0.898493;EPP=12977.6,4091.89;EPPR=0;GTI=1;LEN=6,1;MEANALT=1.9011,2.38462;MQM=59.4002,59.9018;MQMR=0;NS=94;NUMALT=2;ODDS=1.91395;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=210728,67373;QR=0;RO=0;RPL=5975,1883;RPP=12977.6,4091.89;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12977.6,4091.89;SAR=5975,1883;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,17,15:0:0:17,15:593,525:-91.2904,-43.0626,-37.9451,-48.5771,0,-44.0617	1/1:149:0,146,2:0:0:146,2:5144,72:-462.504,-43.9504,0,-456.643,-38.1093,-456.041	1/2:76:0,39,37:0:0:39,37:1388,1328:-221.762,-108.684,-96.944,-113.435,0,-102.297	1/1:132:0,130,1:0:0:130,1:4606,36:-414.054,-39.1339,0,-411.117,-36.1965,-410.816	1/1:57:0,57,0:0:0:57,0:2013,0:-181.442,-17.1587,0,-181.442,-17.1587,-181.442	1/1:35:0,35,0:0:0:35,0:1237,0:-111.519,-10.5361,0,-111.519,-10.5361,-111.519	1/2:71:0,22,48:0:0:22,48:770,1724:-203.281,-140.636,-134.013,-62.6384,0,-48.1889	1/1:126:0,123,0:0:0:123,0:4295,0:-386.37,-37.0267,0,-386.37,-37.0267,-386.37	1/2:77:0,38,39:0:0:38,39:1355,1392:-224.271,-113.828,-102.389,-110.799,0,-99.0589	1/1:78:0,77,1:0:0:77,1:2726,36:-245.182,-23.1793,0,-242.245,-19.8821,-241.944	1/1:110:0,110,0:0:0:110,0:3875,0:-348.851,-33.1133,0,-348.851,-33.1133,-348.851	1/2:62:0,34,28:0:0:34,28:1206,1008:-180.77,-82.596,-72.361,-98.5317,0,-90.1029	1/2:59:0,32,25:0:0:32,25:1127,900:-165.167,-73.4364,-63.8035,-91.7283,0,-84.2025	1/2:75:0,33,42:0:0:33,42:1141,1497:-215.051,-122.346,-112.412,-93.0554,0,-80.4122	1/1:72:0,72,0:0:0:72,0:2556,0:-230.278,-21.6742,0,-230.278,-21.6742,-230.278	1/1:67:0,67,0:0:0:67,0:2374,0:-213.884,-20.169,0,-213.884,-20.169,-213.884	1/1:73:0,73,0:0:0:73,0:2612,0:-234.821,-21.9752,0,-234.821,-21.9752,-234.821	1/1:68:0,68,0:0:0:68,0:2420,0:-217.84,-20.47,0,-217.84,-20.47,-217.84	1/1:75:0,75,0:0:0:75,0:2651,0:-238.734,-22.5773,0,-238.734,-22.5773,-238.734	1/2:187:0,94,93:0:0:94,93:3317,3290:-538.323,-268.323,-240.026,-270.353,0,-242.358	1/1:132:0,131,0:0:0:131,0:4562,0:-410.38,-39.4349,0,-410.38,-39.4349,-410.38	1/2:75:0,27,48:0:0:27,48:953,1724:-218.415,-140.996,-132.868,-77.774,0,-63.3246	1/2:33:0,16,17:0:0:16,17:563,612:-96.116,-50.2944,-45.4779,-46.1773,0,-41.0598	1/1:81:0,81,0:0:0:81,0:2859,0:-257.196,-24.3834,0,-257.196,-24.3834,-257.196	1/1:58:0,58,0:0:0:58,0:2019,0:-181.892,-17.4597,0,-181.892,-17.4597,-181.892	1/1:211:0,209,0:0:0:209,0:7333,0:-659.584,-62.9153,0,-659.584,-62.9153,-659.584	1/2:173:0,84,89:0:0:84,89:2989,3184:-503.526,-259.982,-234.695,-243.9,0,-217.109	1/1:47:0,47,0:0:0:47,0:1675,0:-151.005,-14.1484,0,-151.005,-14.1484,-151.005	1/2:200:0,91,109:0:0:91,109:3207,3870:-576.78,-315.682,-288.288,-261.452,0,-228.64	1/2:175:0,89,85:0:0:89,85:3111,3029:-499.824,-246.981,-220.189,-252.925,0,-227.337	1/1:112:0,112,0:0:0:112,0:3932,0:-354.038,-33.7154,0,-354.038,-33.7154,-354.038	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/1:15:0,15,0:0:0:15,0:532,0:-48.192,-4.51545,0,-48.192,-4.51545,-48.192	2/2:3:0,0,3:0:0:0,3:0,104:-9.7028,-9.7028,-9.7028,-0.90309,-0.90309,0	1/1:19:0,19,0:0:0:19,0:669,0:-60.4233,-5.71957,0,-60.4233,-5.71957,-60.4233	1/2:7:0,6,1:0:0:6,1:204,36:-19.8276,-3.29724,-1.49106,-16.8873,0,-16.5863	1/1:254:0,251,0:0:0:251,0:8881,0:-798.878,-75.5585,0,-798.878,-75.5585,-798.878	1/1:139:0,135,2:0:0:135,2:4726,72:-425.097,-40.6391,0,-419.222,-34.7541,-418.62	1/1:99:0,99,0:0:0:99,0:3482,0:-313.173,-29.802,0,-313.173,-29.802,-313.173	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/2:91:0,49,41:0:0:49,41:1737,1472:-261.604,-120.141,-105.391,-141.537,0,-129.195	1/2:44:0,26,18:0:0:26,18:928,644:-128.477,-52.8721,-45.0453,-75.9624,0,-70.5439	1/2:96:0,41,54:0:0:41,54:1441,1940:-275.601,-158.349,-146.007,-117.334,0,-101.078	1/2:93:0,45,48:0:0:45,48:1584,1720:-269.416,-140.636,-127.09,-129.135,0,-114.685	1/1:75:0,75,0:0:0:75,0:2631,0:-237.011,-22.5773,0,-237.011,-22.5773,-237.011	1/1:118:0,118,0:0:0:118,0:4153,0:-373.934,-35.5215,0,-373.934,-35.5215,-373.934	1/1:101:0,101,0:0:0:101,0:3545,0:-319.059,-30.404,0,-319.059,-30.404,-319.059	1/2:113:0,44,69:0:0:44,69:1550,2480:-328.871,-202.682,-189.437,-126.544,0,-105.773	1/1:81:0,81,0:0:0:81,0:2871,0:-258.46,-24.3834,0,-258.46,-24.3834,-258.46	1/1:81:0,81,0:0:0:81,0:2875,0:-258.968,-24.3834,0,-258.968,-24.3834,-258.968	1/1:154:0,154,0:0:0:154,0:5416,0:-487.531,-46.3586,0,-487.531,-46.3586,-487.531	1/2:11:0,4,7:0:0:4,7:144,252:-32.6714,-20.9217,-19.7176,-12.1095,0,-10.0023	1/1:98:0,98,0:0:0:98,0:3466,0:-312.039,-29.5009,0,-312.039,-29.5009,-312.039	1/1:33:0,33,0:0:0:33,0:1175,0:-106.041,-9.93399,0,-106.041,-9.93399,-106.041	2/2:9:0,0,9:0:0:0,9:0,324:-29.5059,-29.5059,-29.5059,-2.70927,-2.70927,0	1/2:93:0,37,55:0:0:37,55:1278,1966:-264.088,-160.304,-149.166,-103.785,0,-87.2282	1/1:32:0,32,0:0:0:32,0:1123,0:-101.354,-9.63296,0,-101.354,-9.63296,-101.354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chr05	6579041	.	AT	GT	33769.8	PASS	AB=0.502141;ABP=3.16833;AC=39;AF=0.207447;AN=188;AO=2025;CIGAR=1X1M;DP=9681;DPB=9681;DPRA=1.0165;EPP=4400.24;EPPR=16590.9;GTI=1;LEN=1;MEANALT=1.14286;MQM=59.9951;MQMR=59.9978;NS=94;NUMALT=1;ODDS=1.33527;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72470;QR=271555;RO=7643;RPL=2025;RPP=4400.24;RPPR=16599.6;RPR=0;RUN=1;SAF=0;SAP=4400.24;SAR=2025;SRF=1;SRP=16590.9;SRR=7642;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:37,34:37:1312:34:1211:-87.563,0,-96.6483	0/0:171:171,0:171:6043:0:0:0,-51.4761,-543.974	0/1:155:60,95:60:2111:95:3412:-260.634,0,-143.597	0/0:158:157,1:157:5567:1:36:0,-43.9645,-497.557	0/0:60:59,1:59:2120:1:36:0,-14.4635,-187.47	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.303	0/1:139:62,77:62:2228:77:2749:-205.807,0,-158.941	0/0:188:187,0:187:6612:0:0:0,-56.2926,-594.964	0/1:144:75,69:75:2669:69:2480:-180.091,0,-197.107	0/0:140:140,0:140:4974:0:0:0,-42.1442,-447.808	0/0:81:81,0:81:2914:0:0:0,-24.3834,-262.494	0/1:108:54,53:54:1894:53:1888:-137.736,0,-138.273	0/1:82:40,42:40:1440:42:1508:-111.33,0,-105.213	0/1:106:64,42:64:2294:42:1495:-102.935,0,-174.812	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:65:65,0:65:2307:0:0:0,-19.5669,-207.89	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.664	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.425	0/1:156:100,56:100:3590:56:2016:-134.752,0,-276.346	0/0:168:168,0:168:5984:0:0:0,-50.573,-538.667	0/1:83:22,61:22:769:61:2171:-170.671,0,-44.5436	0/1:98:53,45:53:1869:45:1608:-115.509,0,-138.985	0/0:148:148,0:148:5235:0:0:0,-44.5524,-471.288	0/0:113:113,0:113:3996:0:0:0,-34.0164,-359.831	0/0:209:209,0:209:7408:0:0:0,-62.9153,-666.769	0/1:243:126,117:126:4472:117:4168:-302.154,0,-329.5	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/1:175:76,99:76:2700:99:3523:-264.601,0,-190.563	0/1:105:52,53:52:1844:53:1895:-139.219,0,-134.63	0/0:121:121,0:121:4309:0:0:0,-36.4246,-387.986	0/0:124:119,4:119:4235:4:140:0,-24.3201,-368.41	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7229	0/0:57:57,0:57:2027:0:0:0,-17.1587,-182.701	0/0:56:56,0:56:2002:0:0:0,-16.8577,-180.453	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:210:210,0:210:7424:0:0:0,-63.2163,-668.207	0/0:113:113,0:113:3992:0:0:0,-34.0164,-359.471	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/0:43:43,0:43:1527:0:0:0,-12.9443,-137.721	0/1:142:53,89:53:1872:89:3180:-243.678,0,-126.011	0/1:34:21,13:21:754:13:464:-31.8625,0,-57.9518	0/1:129:47,82:47:1670:82:2952:-227.08,0,-111.753	0/1:88:44,44:44:1563:44:1578:-115.821,0,-114.469	0/0:65:65,0:65:2325:0:0:0,-19.5669,-209.509	0/0:134:134,0:134:4775:0:0:0,-40.338,-429.906	0/0:112:111,0:111:3952:0:0:0,-33.4143,-355.659	0/1:116:74,42:74:2635:42:1512:-101.455,0,-202.477	0/0:143:143,0:143:5083:0:0:0,-43.0473,-457.616	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.256	0/0:202:202,0:202:7189:0:0:0,-60.8081,-647.066	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:132:132,0:132:4689:0:0:0,-39.736,-422.169	0/0:49:49,0:49:1750:0:0:0,-14.7505,-157.784	0/0:39:37,2:37:1330:2:72:0,-4.90345,-113.166	0/1:143:69,74:69:2418:74:2633:-194.168,0,-174.826	0/0:79:79,0:79:2802:0:0:0,-23.7814,-252.419	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:154:144,10:144:5132:10:360:0,-13.6143,-429.276	0/0:94:94,0:94:3341:0:0:0,-28.2968,-300.905	0/1:109:53,56:53:1891:56:2016:-148.901,0,-137.655	0/0:72:66,6:66:2366:6:216:0,-1.88365,-193.408	0/1:137:71,65:71:2530:65:2315:-167.31,0,-186.65	0/1:181:84,97:84:2985:97:3480:-258.924,0,-214.396	0/1:76:45,31:45:1582:31:1109:-77.2424,0,-119.789	0/1:71:29,42:29:1044:42:1495:-113.471,0,-72.9017	0/0:107:105,2:105:3745:2:72:0,-25.3735,-330.413	0/1:113:42,71:42:1506:71:2547:-195.463,0,-101.819	0/1:34:23,11:23:797:11:396:-25.7477,0,-61.8106	0/1:94:52,42:52:1849:42:1495:-106.547,0,-138.392	0/1:99:54,43:54:1926:43:1544:-109.693,0,-144.056	0/1:35:21,13:21:733:13:468:-31.9668,0,-55.8002	0/0:103:103,0:103:3681:0:0:0,-31.0061,-331.492	0/0:101:101,0:101:3576:0:0:0,-30.404,-322.048	0/0:188:188,0:188:6621:0:0:0,-56.5936,-595.973	0/0:94:94,0:94:3344:0:0:0,-28.2968,-301.176	0/1:118:52,66:52:1868:66:2368:-177.856,0,-132.878	0/0:77:77,0:77:2742:0:0:0,-23.1793,-247.021	0/0:110:106,3:106:3768:3:108:0,-22.9846,-329.279	0/0:96:96,0:96:3404:0:0:0,-28.8989,-306.573	0/1:105:55,50:55:1908:50:1791:-129.864,0,-140.385	0/0:246:245,1:245:8717:1:36:0,-70.4551,-780.924	0/0:114:114,0:114:4009:0:0:0,-34.3174,-360.996	0/1:58:38,20:38:1346:20:711:-46.8559,0,-103.979	0/0:97:97,0:97:3431:0:0:0,-29.1999,-309.003	0/1:165:92,73:92:3245:73:2616:-186.018,0,-242.6	0/1:54:24,30:24:853:30:1080:-81.2576,0,-60.8338	0/0:76:76,0:76:2683:0:0:0,-22.8783,-241.712	0/0:71:71,0:71:2523:0:0:0,-21.3731,-227.32	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:106:63,43:63:2262:43:1548:-107.704,0,-171.934	0/1:65:22,43:22:792:43:1540:-119.326,0,-52.0387	0/0:45:44,1:44:1559:1:36:0,-9.94807,-137.001	0/0:100:100,0:100:3552:0:0:0,-30.103,-319.888
chr05	6580778	.	A	G	7134.77	PASS	AB=0.494734;ABP=3.85651;AC=45;AF=0.239362;AN=188;AO=1744;CIGAR=1X;DP=8064;DPB=8064;DPRA=0.98084;EPP=3790.06;EPPR=13718;GTI=4;LEN=1;MEANALT=1;MQM=21.8549;MQMR=21.8821;NS=94;NUMALT=1;ODDS=1.23246;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62112;QR=225922;RO=6320;RPL=2;RPP=3772.71;RPPR=13648.7;RPR=1742;RUN=1;SAF=2;SAP=3772.71;SAR=1742;SRF=8;SRP=13657.3;SRR=6312;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:5,10:5:180:10:347:-14.9148,0,-5.52704	0/0:103:103,0:103:3674:0:0:0,-31.0061,-202.657	0/1:87:48,39:48:1724:39:1400:-50.5482,0,-68.1441	0/0:231:230,1:230:8234:1:36:0,-67.3548,-449.349	0/0:99:99,0:99:3540:0:0:0,-29.802,-193.915	0/0:62:62,0:62:2213:0:0:0,-18.6639,-121.364	0/1:199:99,100:99:3548:100:3525:-136.943,0,-136.613	0/0:107:107,0:107:3840:0:0:0,-32.2102,-210.215	0/1:123:66,57:66:2368:57:2024:-75.0508,0,-92.827	0/0:127:127,0:127:4537:0:0:0,-38.2308,-248.992	0/0:37:37,0:37:1307:0:0:0,-11.1381,-72.5704	0/1:71:39,32:39:1400:32:1144:-41.5888,0,-56.9009	0/1:70:27,43:27:968:43:1515:-63.4107,0,-32.1748	0/1:38:15,23:15:536:23:820:-33.9265,0,-18.2297	0/0:60:60,0:60:2143:0:0:0,-18.0618,-117.798	0/0:39:39,0:39:1396:0:0:0,-11.7402,-76.803	0/0:51:51,0:51:1798:0:0:0,-15.3525,-99.7758	0/0:29:29,0:29:1036:0:0:0,-8.72987,-57.1546	0/0:36:36,0:36:1253:0:0:0,-10.8371,-70.496	0/1:223:113,110:113:4047:110:3920:-148.041,0,-155.281	0/0:157:157,0:157:5595:0:0:0,-47.2617,-308.082	0/1:110:35,75:35:1256:75:2696:-108.27,0,-34.5181	0/1:86:37,49:37:1312:49:1742:-70.4011,0,-46.5691	0/0:90:90,0:90:3216:0:0:0,-27.0927,-176.748	0/0:55:55,0:55:1954:0:0:0,-16.5566,-107.453	0/0:334:334,0:334:11966:0:0:0,-100.544,-632.951	0/1:199:114,85:114:4083:85:3052:-106.68,0,-164.82	0/0:41:41,0:41:1467:0:0:0,-12.3422,-80.3349	0/1:313:148,165:148:5279:165:5888:-218.293,0,-188.054	0/1:108:49,59:49:1756:59:2089:-82.9585,0,-63.9402	0/0:138:137,1:137:4928:1:36:0,-39.359,-267.021	0/1:8:3,5:3:108:5:180:-7.63425,0,-3.70458	0/0:12:12,0:12:432:0:0:0,-3.61236,-23.7963	0/0:4:4,0:4:144:0:0:0,-1.20412,-8.07766	0/0:6:6,0:6:216:0:0:0,-1.80618,-12.0073	0/1:8:3,5:3:93:5:180:-7.63425,0,-3.39143	0/0:192:192,0:192:6870:0:0:0,-57.7978,-363.522	0/0:159:159,0:159:5681:0:0:0,-47.8638,-311.648	0/0:62:62,0:62:2202:0:0:0,-18.6639,-121.789	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.18315	0/1:120:74,46:74:2660:46:1656:-54.4772,0,-109.209	0/1:27:13,14:13:455:14:504:-19.5982,0,-17.374	0/1:93:50,43:50:1778:43:1530:-57.3753,0,-70.2587	0/1:48:24,24:24:860:24:847:-32.7889,0,-32.903	0/0:62:62,0:62:2219:0:0:0,-18.6639,-121.924	0/0:165:165,0:165:5905:0:0:0,-49.6699,-311.19	0/0:113:113,0:113:4043:0:0:0,-34.0164,-221.891	0/1:100:48,52:48:1719:52:1833:-71.9455,0,-64.3356	0/0:114:114,0:114:4075:0:0:0,-34.3174,-223.938	0/0:119:119,0:119:4255:0:0:0,-35.8226,-233.833	0/0:153:153,0:153:5480:0:0:0,-46.0576,-289.9	0/1:10:6,4:6:216:4:144:-5.06736,0,-8.90851	0/0:119:119,0:119:4258:0:0:0,-35.8226,-233.807	0/0:43:43,0:43:1536:0:0:0,-12.9443,-81.1709	0/1:10:8,2:8:288:2:72:-1.13769,0,-12.9267	0/1:91:53,38:53:1904:38:1353:-47.0105,0,-76.7642	0/0:58:58,0:58:2060:0:0:0,-17.4597,-113.588	1/1:3:0,3:0:0:3:108:-5.84244,-0.90309,0	0/1:20:8,12:8:284:12:428:-16.7083,0,-9.19365	0/0:46:46,0:46:1648:0:0:0,-13.8474,-90.5569	0/1:94:57,37:57:2032:37:1324:-45.2965,0,-83.6328	0/1:18:10,8:10:360:8:269:-10.1901,0,-14.4481	0/1:157:80,77:80:2867:77:2734:-98.6148,0,-104.465	0/1:190:108,82:108:3867:82:2921:-103.749,0,-156.413	0/1:77:32,45:32:1144:45:1588:-65.0182,0,-39.7827	0/1:70:34,36:34:1220:36:1292:-49.8584,0,-47.1781	0/0:179:179,0:179:6378:0:0:0,-53.8844,-350.607	0/1:66:18,48:18:648:48:1715:-74.5487,0,-15.7174	0/1:16:7,9:7:252:9:324:-13.0854,0,-9.15568	0/1:75:50,25:50:1773:25:881:-26.4367,0,-76.2808	0/1:52:28,24:28:1004:24:849:-29.4966,0,-38.2508	0/1:20:10,10:10:360:10:352:-13.8019,0,-13.8461	0/0:108:107,1:107:3819:1:36:0,-30.3281,-207.875	0/0:47:47,0:47:1692:0:0:0,-14.1484,-92.5656	0/0:191:191,0:191:6808:0:0:0,-57.4967,-374.606	0/0:155:155,0:155:5564:0:0:0,-46.6596,-303.721	0/1:73:41,32:41:1472:32:1148:-41.0959,0,-58.6046	0/0:73:73,0:73:2603:0:0:0,-21.9752,-143.385	0/1:16:6,10:6:216:10:356:-15.0281,0,-7.19085	0/0:86:86,0:86:3079:0:0:0,-25.8886,-169.382	0/1:95:56,39:56:1991:39:1396:-48.377,0,-81.297	0/0:35:35,0:35:1252:0:0:0,-10.536,-68.6015	0/0:85:85,0:85:3048:0:0:0,-25.5875,-167.164	0/1:38:23,15:23:828:15:540:-18.2517,0,-33.9704	0/0:54:54,0:54:1928:0:0:0,-16.2556,-105.366	0/1:116:68,48:68:2418:48:1698:-59.3615,0,-99.3489	0/1:51:20,31:20:716:31:1116:-45.7757,0,-24.1405	0/0:69:69,0:69:2463:0:0:0,-20.7711,-135.634	0/0:52:52,0:52:1856:0:0:0,-15.6536,-102.045	0/0:28:28,0:28:1004:0:0:0,-8.42884,-55.2118	0/1:51:24,27:24:864:27:972:-38.2557,0,-32.0218	0/1:61:18,43:18:648:43:1532:-66.2557,0,-17.2225	0/0:69:69,0:69:2452:0:0:0,-20.7711,-134.686	0/0:93:93,0:93:3317:0:0:0,-27.9958,-182.558
chr05	6730056	.	TCTT	CCTT,CCTC	223348	PASS	AB=0.477712,0.51619;ABP=23.5306,13.8384;AC=142,46;AF=0.755319,0.244681;AN=188;AO=8026,2466;CIGAR=1X3M,1X2M1X;DP=10560;DPB=10560.8;DPRA=0,1.05695;EPP=17422.6,5357.86;EPPR=26.8965;GTI=1;LEN=1,4;MEANALT=2.12766,2.56364;MQM=59.9636,59.6277;MQMR=60;NS=94;NUMALT=2;ODDS=1.04422;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=54,54;PQR=0;PRO=0;QA=284041,86430;QR=392;RO=11;RPL=8025,2466;RPP=17422.6,5357.86;RPPR=26.8965;RPR=1,0;RUN=1,1;SAF=8026,2466;SAP=17431.2,5357.86;SAR=0,0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,12,13:0:0:12,13:402,435:-68.1002,-35.548,-31.9356,-32.8869,0,-28.9735	1/1:209:1,207,0:1:36:207,0:7403,0:-662.748,-59.3459,0,-663.049,-62.3132,-665.987	1/2:195:0,92,103:0:0:92,103:3291,3598:-561.333,-292.972,-265.278,-268.714,0,-237.708	1/1:226:1,224,1:1:36:224,1:7874,36:-704.825,-64.4933,0,-702.189,-64.4933,-704.825	1/1:72:0,72,0:0:0:72,0:2545,0:-229.29,-21.6742,0,-229.29,-21.6742,-229.29	1/1:69:0,69,0:0:0:69,0:2435,0:-219.4,-20.7711,0,-219.4,-20.7711,-219.4	1/2:126:0,61,63:0:0:61,63:2158,2217:-355.782,-180.01,-161.647,-175.865,0,-156.9	1/1:220:0,216,0:0:0:216,0:7645,0:-687.756,-65.0225,0,-687.756,-65.0225,-687.756	1/2:81:0,31,49:0:0:31,49:1097,1718:-229.187,-139.833,-130.501,-89.4047,0,-74.6542	1/1:108:0,106,1:0:0:106,1:3788,35:-340.818,-31.9092,0,-337.97,-29.0115,-337.669	1/1:99:0,99,0:0:0:99,0:3478,0:-313.229,-29.802,0,-313.229,-29.802,-313.229	1/2:80:0,39,41:0:0:39,41:1365,1444:-228.779,-117.723,-105.983,-111.406,0,-99.0638	1/2:67:0,35,31:0:0:35,31:1238,1088:-189.446,-88.6106,-78.0746,-100.905,0,-91.573	1/2:83:0,42,41:0:0:42,41:1480,1416:-235.885,-115.386,-102.743,-120.848,0,-108.505	1/1:66:0,66,0:0:0:66,0:2328,0:-209.691,-19.868,0,-209.691,-19.868,-209.691	1/1:60:0,60,0:0:0:60,0:2118,0:-190.881,-18.0618,0,-190.881,-18.0618,-190.881	1/1:99:0,99,0:0:0:99,0:3498,0:-315.031,-29.802,0,-315.031,-29.802,-315.031	1/1:60:0,59,0:0:0:59,0:2089,0:-187.987,-17.7608,0,-187.987,-17.7608,-187.987	1/1:57:1,56,0:1:35:56,0:1994,0:-176.234,-13.6601,0,-176.535,-16.8577,-179.383	1/2:230:0,113,116:0:0:113,116:3999,4111:-660.579,-334.853,-300.836,-325.721,0,-290.801	1/1:138:0,138,0:0:0:138,0:4922,0:-443.131,-41.5421,0,-443.131,-41.5421,-443.131	1/2:143:0,43,100:0:0:43,100:1526,3542:-413.163,-288.83,-275.886,-124.629,0,-94.5255	1/2:58:0,24,33:0:0:24,33:851,1157:-163.533,-94.2,-86.9753,-69.3826,0,-59.4486	1/1:88:0,88,0:0:0:88,0:3072,0:-276.692,-26.4906,0,-276.692,-26.4906,-276.692	1/1:86:0,86,0:0:0:86,0:3049,0:-274.64,-25.8886,0,-274.64,-25.8886,-274.64	1/1:287:0,284,1:0:0:284,1:10046,32:-903.65,-85.4925,0,-901.072,-82.9275,-900.771	1/2:207:1,98,103:1:36:98,103:3453,3543:-564.989,-284.155,-257.591,-278.227,0,-250.159	1/1:37:0,37,0:0:0:37,0:1276,0:-115.135,-11.1381,0,-115.135,-11.1381,-115.135	1/2:308:1,155,151:1:36:155,151:5476,5301:-874.129,-428.471,-384.749,-443.014,0,-400.496	1/2:160:0,72,86:0:0:72,86:2537,3043:-454.427,-247.875,-226.201,-206.584,0,-180.695	1/1:126:0,124,0:0:0:124,0:4371,0:-393.247,-37.3277,0,-393.247,-37.3277,-393.247	1/2:13:0,6,7:0:0:6,7:212,244:-37.4586,-20.191,-18.3848,-17.6186,0,-15.5114	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/2:10:0,4,6:0:0:4,6:144,211:-29.2771,-17.524,-16.3199,-12.1095,0,-10.3033	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:18:0,2,16:0:0:2,16:72,553:-51.0596,-45.1831,-44.581,-6.23466,0,-1.41818	1/1:201:0,201,0:0:0:201,0:7132,0:-641.938,-60.507,0,-641.938,-60.507,-641.938	1/1:138:0,137,0:0:0:137,0:4870,0:-438.172,-41.2411,0,-438.172,-41.2411,-438.172	1/1:96:0,96,0:0:0:96,0:3409,0:-307.025,-28.8989,0,-307.025,-28.8989,-307.025	1/2:12:0,8,4:0:0:8,4:284,144:-35.2446,-12.1095,-9.70126,-23.4932,0,-22.2891	1/2:206:0,111,95:0:0:111,95:3968,3313:-593.32,-269.775,-236.361,-323.897,0,-295.299	1/2:62:0,27,35:0:0:27,35:931,1212:-174.468,-98.8423,-90.7144,-75.971,0,-65.435	1/2:141:0,58,82:0:0:58,82:2062,2851:-399.817,-231.779,-214.319,-168.03,0,-143.346	1/2:86:0,46,40:0:0:46,40:1611,1382:-243.667,-112.586,-98.7386,-131.428,0,-119.387	1/1:62:0,61,0:0:0:61,0:2129,0:-191.633,-18.3628,0,-191.633,-18.3628,-191.633	1/1:108:1,106,0:1:36:106,0:3780,0:-336.802,-28.9718,0,-337.103,-31.9092,-340.041	1/1:125:0,125,0:0:0:125,0:4453,0:-400.933,-37.6288,0,-400.933,-37.6288,-400.933	1/2:217:2,117,97:2:72:117,97:4134,3415:-608.24,-272.17,-242.824,-330.825,0,-307.5	1/1:173:0,171,1:0:0:171,1:6059,36:-545.073,-51.4761,0,-542.135,-48.4838,-541.834	1/1:182:0,181,0:0:0:181,0:6430,0:-578.539,-54.4864,0,-578.539,-54.4864,-578.539	1/1:165:0,162,1:0:0:162,1:5746,36:-516.925,-48.7669,0,-513.988,-45.8161,-513.687	1/2:14:0,8,6:0:0:8,6:284,212:-40.76,-17.6188,-15.2105,-23.4951,0,-21.6889	1/1:296:0,296,0:0:0:296,0:10468,0:-941.987,-89.1049,0,-941.987,-89.1049,-941.987	1/1:64:0,64,0:0:0:64,0:2257,0:-203.392,-19.2659,0,-203.392,-19.2659,-203.392	1/2:18:0,11,7:0:0:11,7:396,246:-52.6916,-20.3748,-17.0634,-32.6714,0,-30.5642	1/2:133:0,54,76:0:0:54,76:1915,2667:-372.884,-216.866,-200.61,-156.011,0,-133.133	1/1:35:0,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chr05	7861686	.	C	T	64646.5	PASS	AB=0.494493;ABP=3.46474;AC=141;AF=0.758065;AN=186;AO=3099;CIGAR=1X;DP=3979;DPB=3979;DPRA=43.7033;EPP=6732.4;EPPR=1911.73;GTI=1;LEN=1;MEANALT=1.01099;MQM=59.9422;MQMR=59.5233;NS=93;NUMALT=1;ODDS=1.41923;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109414;QR=31316;RO=879;RPL=3099;RPP=6732.4;RPPR=1911.73;RPR=0;RUN=1;SAF=0;SAP=6732.4;SAR=3099;SRF=0;SRP=1911.73;SRR=879;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:15,12:15:536:12:428:-30.731,0,-40.447	1/1:77:0,77:0:0:77:2740:-246.844,-23.1793,0	0/1:47:24,23:24:829:23:824:-60.3349,0,-60.7749	1/1:93:0,93:0:0:93:3254:-293.081,-27.9958,0	1/1:44:0,44:0:0:44:1527:-137.716,-13.2453,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	0/1:67:32,35:32:1122:35:1209:-88.9418,0,-81.0261	1/1:45:0,45:0:0:45:1596:-143.93,-13.5464,0	0/1:40:18,22:18:644:22:769:-57.4874,0,-46.2494	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:22:7,15:7:243:15:525:-40.9554,0,-15.5848	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4569	0/1:10:4,6:4:144:6:201:-15.4067,0,-10.2986	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:101:47,54:47:1680:54:1928:-143.393,0,-121.083	1/1:110:0,110:0:0:110:3882:-349.307,-33.1133,0	0/1:65:46,19:46:1648:19:672:-41.2399,0,-129.039	0/1:45:22,23:22:792:23:824:-60.937,0,-58.0546	1/1:47:0,47:0:0:47:1672:-150.763,-14.1484,0	1/1:48:1,47:1:36:47:1638:-144.102,-10.8512,0	1/1:141:0,141:0:0:141:4990:-449.251,-42.4452,0	0/1:94:48,46:48:1724:46:1606:-116.528,0,-127.135	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:156:79,77:79:2836:77:2701:-196.372,0,-208.34	0/1:57:28,29:28:1004:29:1025:-75.402,0,-73.4979	1/1:93:0,93:0:0:93:3259:-293.531,-27.9958,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:5:0,4:0:0:4:139:-12.6147,-1.20412,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:89:0,89:0:0:89:3172:-285.701,-26.7917,0	1/1:15:0,15:0:0:15:521:-47.2163,-4.51545,0	.:.:.:.:.:.:.:.	0/1:82:43,39:43:1517:39:1369:-98.8138,0,-112.11	0/1:11:2,9:2:72:9:320:-25.8292,0,-3.52539	0/1:66:25,41:25:900:41:1452:-111.108,0,-61.4316	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4805	1/1:20:1,19:1:36:19:672:-57.2049,-2.42233,0	1/1:57:0,57:0:0:57:2008:-180.993,-17.1587,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:92:42,50:42:1477:50:1769:-131.796,0,-105.523	1/1:72:2,70:2:72:70:2461:-214.905,-14.8374,0	1/1:45:0,45:0:0:45:1574:-141.945,-13.5464,0	1/1:89:0,89:0:0:89:3120:-281.028,-26.7917,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:70:0,70:0:0:70:2470:-222.552,-21.0721,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:38:25,13:25:896:13:460:-30.2962,0,-69.5049	1/1:55:0,55:0:0:55:1957:-176.317,-16.5567,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:21:4,17:4:144:17:596:-47.6462,0,-6.99199	1/1:39:0,39:0:0:39:1373:-123.867,-11.7402,0	0/1:45:21,24:21:741:24:856:-63.7698,0,-53.4627	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.63014	0/1:72:35,37:35:1256:37:1312:-96.7075,0,-91.6702	0/1:103:67,36:67:2388:36:1284:-84.8206,0,-184.159	0/1:52:24,28:24:856:28:1000:-74.6618,0,-61.6875	0/1:35:17,18:17:582:18:624:-45.9481,0,-41.9895	1/1:111:1,110:1:36:110:3899:-347.504,-29.8161,0	0/1:61:38,23:38:1341:23:820:-55.7597,0,-102.621	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:41:21,20:21:752:20:708:-51.7034,0,-55.6558	0/1:23:9,14:9:320:14:500:-38.4125,0,-22.2177	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.02808	1/1:78:0,78:0:0:78:2733:-246.215,-23.4803,0	1/1:18:0,18:0:0:18:636:-57.568,-5.41854,0	1/1:92:0,92:0:0:92:3217:-289.753,-27.6948,0	1/1:73:0,73:0:0:73:2538:-228.669,-21.9752,0	0/1:39:16,23:16:568:23:809:-61.3881,0,-39.7117	1/1:31:0,31:0:0:31:1077:-97.2235,-9.33193,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:33:0,33:0:0:33:1142:-103.081,-9.93399,0	0/1:52:26,26:26:928:26:917:-67.191,0,-68.1683	1/1:94:0,94:0:0:94:3314:-298.479,-28.2968,0	1/1:37:0,37:0:0:37:1307:-117.93,-11.1381,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:15:0,15:0:0:15:536:-48.5739,-4.51545,0	0/1:32:16,16:16:568:16:572:-42.1781,0,-41.8189	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:13:0,13:0:0:13:432:-39.1977,-3.91339,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.1513	0/1:14:9,5:9:324:5:169:-11.3271,0,-25.2914	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0
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chr05	8292902	.	A	G	108006	PASS	AB=0.542638;ABP=48.3784;AC=138;AF=0.734043;AN=188;AO=5107;CIGAR=1X;DP=6437;DPB=6437;DPRA=25.9636;EPP=11092.7;EPPR=2886.73;GTI=6;LEN=1;MEANALT=1.02222;MQM=59.6565;MQMR=60;NS=94;NUMALT=1;ODDS=0.306379;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181470;QR=47544;RO=1328;RPL=3;RPP=11066.7;RPPR=2878.05;RPR=5104;RUN=1;SAF=3;SAP=11066.7;SAR=5104;SRF=1;SRP=2878.05;SRR=1327;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:29,17:29:1044:17:577:-38.3894,0,-80.4274	1/1:63:0,62:0:0:62:2228:-200.416,-18.6639,0	0/1:70:21,49:21:752:49:1743:-136.06,0,-46.9342	1/1:146:0,146:0:0:146:5184:-466.664,-43.9504,0	1/1:46:0,46:0:0:46:1652:-148.964,-13.8474,0	1/1:33:0,33:0:0:33:1179:-106.4,-9.93399,0	0/1:69:25,44:25:900:44:1547:-118.747,0,-60.5499	1/1:94:0,94:0:0:94:3333:-300.111,-28.2968,0	0/1:60:26,34:26:932:34:1192:-89.516,0,-66.1371	1/1:72:0,72:0:0:72:2574:-231.795,-21.6742,0	1/1:40:0,40:0:0:40:1408:-127.011,-12.0412,0	0/1:86:32,54:32:1148:54:1936:-148.603,0,-77.7413	0/1:55:30,25:30:1072:25:900:-64.7562,0,-80.2358	0/1:26:9,17:9:324:17:604:-46.8546,0,-21.6791	1/1:55:0,55:0:0:55:1945:-175.321,-16.5567,0	1/1:59:0,59:0:0:59:2120:-191.055,-17.7608,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:25:0,25:0:0:25:888:-80.2308,-7.52575,0	1/1:31:0,31:0:0:31:1112:-100.369,-9.33193,0	0/1:121:40,81:40:1440:81:2865:-221.66,0,-93.4731	1/1:95:0,95:0:0:95:3388:-305.019,-28.5979,0	0/1:68:39,29:39:1400:29:1044:-73.7966,0,-105.829	0/1:94:43,51:43:1523:51:1785:-132.26,0,-109.066	1/1:49:0,49:0:0:49:1758:-158.467,-14.7505,0	1/1:63:0,63:0:0:63:2240:-201.843,-18.9649,0	1/1:160:0,160:0:0:160:5699:-513.023,-48.1648,0	0/1:179:71,108:71:2552:108:3837:-291.615,0,-176.046	0/1:34:18,16:18:639:16:548:-39.3935,0,-47.6032	0/1:181:71,110:71:2544:110:3948:-301.021,0,-174.724	0/1:112:51,61:51:1832:61:2180:-162.617,0,-131.445	1/1:76:0,76:0:0:76:2713:-244.392,-22.8783,0	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	1/1:10:0,10:0:0:10:349:-31.7365,-3.0103,0	0/1:3:1,2:1:32:2:68:-5.55462,0,-2.29622	1/1:9:0,9:0:0:9:324:-29.4976,-2.70927,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:195:0,195:0:0:195:6886:-619.809,-58.7009,0	1/1:122:2,120:2:72:120:4235:-374.466,-29.8889,0	1/1:56:0,56:0:0:56:1978:-178.275,-16.8577,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:79:26,52:26:932:52:1842:-142.21,0,-60.3587	0/1:30:18,12:18:648:12:432:-30.1903,0,-49.621	0/1:101:52,49:52:1856:49:1760:-128.28,0,-136.916	0/1:58:34,24:34:1216:24:840:-58.4553,0,-92.2868	1/1:57:0,57:0:0:57:2035:-183.42,-17.1587,0	1/1:104:0,104:0:0:104:3667:-330.216,-31.3071,0	1/1:68:0,68:0:0:68:2405:-216.669,-20.47,0	0/1:82:47,35:47:1676:35:1234:-86.5919,0,-126.443	1/1:52:0,52:0:0:52:1853:-166.777,-15.6536,0	1/1:72:0,72:0:0:72:2580:-232.403,-21.6742,0	1/1:95:0,95:0:0:95:3373:-303.78,-28.5979,0	0/1:11:3,8:3:108:8:288:-22.9537,0,-6.76384	1/1:146:0,146:0:0:146:5194:-467.578,-43.9504,0	1/1:41:0,41:0:0:41:1449:-130.666,-12.3422,0	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:121:60,61:60:2144:61:2181:-159.351,0,-156.803	1/1:43:0,43:0:0:43:1517:-136.818,-12.9443,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:2,5:2:72:5:180:-14.4439,0,-4.72951	1/1:69:0,69:0:0:69:2448:-220.569,-20.7711,0	0/1:81:41,40:41:1464:40:1393:-101.277,0,-107.673	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:137:59,78:59:2124:78:2746:-206.133,0,-150.187	0/1:132:77,55:77:2752:55:1949:-135.948,0,-208.186	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:55:13,42:13:468:42:1499:-118.645,0,-25.903	1/1:133:0,133:0:0:133:4711:-423.939,-40.037,0	0/1:136:80,56:80:2876:56:1993:-138.69,0,-218.136	0/1:33:13,20:13:468:20:699:-53.2985,0,-32.5257	0/1:28:9,19:9:324:19:684:-53.4615,0,-21.077	0/1:53:27,26:27:959:26:932:-68.2397,0,-70.6708	0/1:19:2,17:2:72:17:612:-49.6888,0,-1.11715	1/1:123:0,123:0:0:123:4357:-392.276,-37.0267,0	1/1:57:0,57:0:0:57:2021:-182.152,-17.1587,0	1/1:113:1,112:1:36:112:3983:-355.026,-30.4181,0	1/1:99:0,99:0:0:99:3527:-317.532,-29.802,0	0/1:84:44,40:44:1580:40:1417:-102.531,0,-117.205	1/1:51:0,51:0:0:51:1798:-162.037,-15.3525,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:69:0,69:0:0:69:2449:-220.146,-20.7711,0	0/1:51:19,32:19:680:32:1139:-87.4355,0,-46.1766	1/1:140:1,139:1:36:139:4950:-442.045,-38.5459,0	1/1:61:0,61:0:0:61:2157:-194.345,-18.3628,0	0/1:58:32,26:32:1127:26:920:-65.5806,0,-84.2777	1/1:51:0,51:0:0:51:1824:-164.436,-15.3525,0	0/1:113:53,60:53:1888:60:2137:-158.577,0,-136.182	0/1:28:12,16:12:432:16:572:-43.3764,0,-30.7924	1/1:75:0,75:0:0:75:2670:-240.521,-22.5773,0	1/1:64:0,64:0:0:64:2300:-207.243,-19.2659,0	1/1:30:0,30:0:0:30:1063:-95.9624,-9.0309,0	0/1:77:35,42:35:1252:42:1493:-111.465,0,-89.8058	0/1:74:44,30:44:1576:30:1076:-74.8766,0,-119.855	1/1:150:0,150:0:0:150:5348:-481.424,-45.1545,0	1/1:67:0,67:0:0:67:2387:-215.06,-20.169,0
chr05	8292911	.	T	A	108910	PASS	AB=0.543568;ABP=50.6926;AC=139;AF=0.739362;AN=188;AO=5118;CIGAR=1X;DP=6456;DPB=6456;DPRA=26.0404;EPP=11116.6;EPPR=2904.1;GTI=6;LEN=1;MEANALT=1.01111;MQM=59.6741;MQMR=59.9768;NS=94;NUMALT=1;ODDS=0.278333;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182877;QR=47663;RO=1336;RPL=0;RPP=11116.6;RPPR=2904.1;RPR=5118;RUN=1;SAF=0;SAP=11116.6;SAR=5118;SRF=0;SRP=2904.1;SRR=1336;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:30,18:30:1046:18:648:-44.174,0,-79.9964	1/1:63:0,63:0:0:63:2229:-200.873,-18.9649,0	0/1:72:20,52:20:712:52:1831:-143.373,0,-42.7325	1/1:148:0,148:0:0:148:5303:-477.367,-44.5524,0	1/1:46:0,46:0:0:46:1639:-147.793,-13.8474,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:71:26,45:26:928:45:1597:-122.637,0,-62.4651	1/1:93:1,92:1:36:92:3288:-292.448,-24.3975,0	0/1:60:26,34:26:917:34:1205:-90.6875,0,-64.7828	1/1:74:0,74:0:0:74:2648:-238.459,-22.2762,0	1/1:40:0,40:0:0:40:1432:-129.173,-12.0412,0	0/1:84:31,53:31:1116:53:1900:-145.975,0,-75.4652	0/1:56:30,26:30:1080:26:915:-65.7997,0,-80.6556	0/1:27:10,17:10:356:17:604:-46.5563,0,-24.2534	1/1:55:0,55:0:0:55:1963:-176.942,-16.5567,0	1/1:59:0,59:0:0:59:2116:-190.695,-17.7608,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:24:0,24:0:0:24:849:-76.7278,-7.22472,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:119:39,80:39:1404:80:2860:-221.814,0,-90.8367	1/1:96:0,96:0:0:96:3398:-306.016,-28.8989,0	0/1:69:39,30:39:1396:30:1061:-75.028,0,-105.168	0/1:94:42,52:42:1512:52:1856:-139.023,0,-108.078	1/1:50:0,50:0:0:50:1784:-160.809,-15.0515,0	1/1:60:0,60:0:0:60:2148:-193.569,-18.0618,0	1/1:158:0,158:0:0:158:5662:-509.692,-47.5627,0	0/1:175:68,107:68:2444:107:3804:-289.855,0,-167.534	0/1:35:18,17:18:644:17:592:-43.0571,0,-47.7545	0/1:184:72,112:72:2573:112:4018:-306.412,0,-176.428	0/1:111:51,60:51:1798:60:2160:-161.123,0,-128.684	1/1:74:0,74:0:0:74:2635:-237.388,-22.2762,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:12:0,12:0:0:12:432:-39.213,-3.61236,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:9:0,9:0:0:9:315:-28.679,-2.70927,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:195:0,195:0:0:195:6981:-628.346,-58.7009,0	1/1:124:2,122:2:72:122:4371:-386.704,-30.491,0	1/1:55:0,55:0:0:55:1976:-178.095,-16.5567,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:81:28,53:28:1008:53:1899:-146.795,0,-66.6529	0/1:31:19,12:19:680:12:432:-29.8893,0,-52.1972	0/1:104:53,51:53:1889:51:1836:-134.214,0,-138.975	0/1:59:36,23:36:1284:23:824:-56.7225,0,-98.1026	1/1:58:0,58:0:0:58:2084:-187.828,-17.4597,0	1/1:101:0,101:0:0:101:3601:-324.27,-30.404,0	1/1:73:0,73:0:0:73:2593:-233.583,-21.9752,0	0/1:83:49,34:49:1744:34:1216:-84.7611,0,-132.259	1/1:52:0,52:0:0:52:1857:-167.275,-15.6536,0	1/1:72:0,72:0:0:72:2587:-233.07,-21.6742,0	1/1:99:0,99:0:0:99:3560:-320.599,-29.802,0	0/1:11:3,8:3:108:8:288:-22.9537,0,-6.76384	1/1:143:0,143:0:0:143:5127:-461.444,-43.0473,0	1/1:40:0,40:0:0:40:1440:-129.873,-12.0412,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:123:62,61:62:2224:61:2188:-159.377,0,-163.397	1/1:45:0,45:0:0:45:1604:-144.647,-13.5464,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:2,5:2:68:5:180:-14.4439,0,-4.3505	1/1:71:0,71:0:0:71:2543:-229.115,-21.3731,0	0/1:83:42,41:42:1508:41:1438:-104.726,0,-111.029	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:138:59,79:59:2090:79:2840:-214.286,0,-146.824	0/1:133:78,55:78:2762:55:1971:-137.627,0,-208.783	0/1:9:2,7:2:72:7:237:-18.9498,0,-4.12745	0/1:55:12,43:12:428:43:1548:-123.049,0,-22.3022	1/1:132:0,130:0:0:130:4655:-418.532,-39.1339,0	0/1:136:79,57:79:2821:57:2033:-142.292,0,-213.188	0/1:32:12,20:12:432:20:716:-55.1348,0,-29.5882	0/1:26:8,18:8:288:18:648:-50.8251,0,-18.4406	0/1:54:27,27:27:972:27:964:-70.8167,0,-71.5423	0/1:19:2,17:2:72:17:603:-48.8748,0,-1.11715	1/1:123:0,123:0:0:123:4392:-395.404,-37.0267,0	1/1:57:0,57:0:0:57:2040:-183.861,-17.1587,0	1/1:111:1,110:1:36:110:3894:-347.035,-29.8161,0	1/1:97:0,97:0:0:97:3488:-314.109,-29.1999,0	0/1:84:44,40:44:1546:40:1436:-104.248,0,-114.141	1/1:51:0,51:0:0:51:1830:-164.909,-15.3525,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:68:0,68:0:0:68:2425:-218.32,-20.47,0	0/1:56:22,34:22:784:34:1202:-91.4804,0,-53.7077	1/1:139:1,138:1:32:138:4945:-441.989,-38.6439,0	1/1:61:0,61:0:0:61:2176:-196.081,-18.3628,0	0/1:58:30,28:30:1057:28:1000:-72.7646,0,-77.9792	1/1:51:0,51:0:0:51:1828:-164.796,-15.3525,0	0/1:113:53,60:53:1908:60:2148:-159.569,0,-137.981	0/1:28:12,16:12:428:16:576:-43.7379,0,-30.43	1/1:77:0,77:0:0:77:2725:-245.45,-23.1793,0	1/1:66:0,66:0:0:66:2354:-212.115,-19.868,0	1/1:30:0,30:0:0:30:1075:-97.0453,-9.0309,0	0/1:80:38,42:38:1355:42:1508:-111.899,0,-98.1673	0/1:73:43,30:43:1529:30:1080:-75.5381,0,-115.926	1/1:148:0,148:0:0:148:5271:-474.505,-44.5524,0	1/1:65:0,65:0:0:65:2308:-207.91,-19.567,0
chr05	8292937	.	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chr05	8389923	.	G	A	123074	PASS	AB=0.706625;ABP=825.889;AC=139;AF=0.747312;AN=186;AO=5688;CIGAR=1X;DP=6365;DPB=6365;DPRA=17.2853;EPP=12354.3;EPPR=1468.75;GTI=18;LEN=1;MEANALT=1.02174;MQM=59.8087;MQMR=59.5511;NS=93;NUMALT=1;ODDS=0.178192;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203189;QR=20790;RO=675;RPL=5688;RPP=12354.3;RPPR=1468.75;RPR=0;RUN=1;SAF=5688;SAP=12354.3;SAR=0;SRF=675;SRP=1468.75;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:8,30:8:239:30:1052:-83.5486,0,-10.277	1/1:88:0,88:0:0:88:3162:-284.786,-26.4906,0	0/1:111:52,59:52:1572:59:2112:-156.906,0,-108.327	1/1:108:0,107:0:0:107:3838:-345.399,-32.2102,0	1/1:51:1,50:1:32:50:1788:-157.968,-12.1532,0	1/1:56:1,55:1:21:55:1968:-175.291,-14.7577,0	0/1:66:9,57:9:299:57:2027:-162.834,0,-7.36525	1/1:46:0,46:0:0:46:1640:-147.885,-13.8474,0	0/1:43:7,36:7:202:36:1292:-103.639,0,-5.51945	1/1:71:1,70:1:36:70:2516:-223.035,-17.7749,0	1/1:78:0,78:0:0:78:2779:-249.4,-23.4803,0	0/1:34:14,20:14:397:20:716:-54.5327,0,-25.7689	0/1:54:15,39:15:438:39:1392:-109.323,0,-23.4469	0/1:65:13,52:13:386:52:1827:-145.134,0,-15.4619	1/1:65:0,65:0:0:65:2307:-207.891,-19.567,0	1/1:49:1,48:1:36:48:1706:-150.226,-11.1522,0	1/1:79:0,79:0:0:79:2803:-252.51,-23.7814,0	1/1:43:0,43:0:0:43:1539:-138.803,-12.9443,0	1/1:38:0,38:0:0:38:1346:-121.439,-11.4391,0	0/1:100:29,71:29:840:71:2541:-198.837,0,-45.7568	1/1:91:0,91:0:0:91:3259:-293.53,-27.3937,0	0/1:69:34,35:34:1029:35:1256:-92.5725,0,-72.1183	0/1:57:23,34:23:657:34:1220:-92.9481,0,-42.2438	1/1:123:0,123:0:0:123:4407:-396.71,-37.0267,0	1/1:59:0,59:0:0:59:2112:-190.303,-17.7608,0	1/1:298:2,296:2:68:296:10583:-944.575,-83.2492,0	0/1:117:19,98:19:610:98:3520:-281.788,0,-19.9838	0/1:26:6,20:6:179:20:707:-56.1278,0,-8.57731	0/1:89:30,59:30:950:59:2116:-163.916,0,-58.9963	0/1:46:17,29:17:524:29:1044:-80.4274,0,-33.6046	1/1:121:0,121:0:0:121:4330:-389.711,-36.4246,0	0/1:3:1,2:1:27:2:72:-5.93363,0,-1.79669	0/1:32:3,29:3:104:29:1018:-82.2828,0,-0.069845	0/1:22:17,5:17:590:5:176:-9.56236,0,-46.8015	0/1:22:8,14:8:275:14:504:-39.0754,0,-18.4599	0/1:12:4,8:4:120:8:284:-22.291,0,-7.4842	1/1:182:0,182:0:0:182:6459:-580.902,-54.7875,0	1/1:143:0,143:0:0:143:5104:-459.4,-43.0473,0	1/1:86:0,86:0:0:86:3067:-276.259,-25.8886,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:67:12,55:12:366:55:1967:-157.135,0,-13.0685	0/1:31:8,23:8:253:23:824:-65.1514,0,-13.7461	0/1:85:23,62:23:719:62:2220:-174.318,0,-39.0958	0/1:40:5,35:5:153:35:1260:-101.628,0,-2.03127	1/1:69:0,69:0:0:69:2450:-220.667,-20.7711,0	1/1:103:0,103:0:0:103:3683:-331.666,-31.0061,0	1/1:66:0,66:0:0:66:2357:-212.389,-19.868,0	0/1:49:11,38:11:339:38:1355:-107.499,0,-16.0542	1/1:96:0,96:0:0:96:3431:-308.949,-28.8989,0	1/1:130:0,130:0:0:130:4664:-419.908,-39.1339,0	1/1:54:0,54:0:0:54:1932:-174.117,-16.2556,0	1/1:9:1,8:1:27:8:288:-23.5676,-0.00948716,0	1/1:118:0,118:0:0:118:4222:-379.603,-35.5215,0	1/1:38:0,38:0:0:38:1359:-122.607,-11.4391,0	0/1:35:9,26:9:301:26:925:-73.0292,0,-16.8681	0/1:64:16,48:16:490:48:1728:-136.539,0,-25.1285	1/1:61:0,61:0:0:61:2181:-196.555,-18.3628,0	.:.:.:.:.:.:.:.	0/1:7:3,4:3:104:4:140:-10.8374,0,-7.5956	1/1:76:0,76:0:0:76:2719:-244.95,-22.8783,0	0/1:71:10,60:10:293:60:2156:-172.914,0,-5.23609	0/1:10:7,3:7:228:3:108:-7.06487,0,-17.8273	1/1:76:6,70:6:188:70:2497:-207.736,-5.65062,0	0/1:124:36,88:36:1100:88:3118:-243.375,0,-61.945	0/1:57:19,38:19:571:38:1368:-106.262,0,-34.5148	0/1:24:9,15:9:284:15:540:-41.7118,0,-18.6434	1/1:109:0,109:0:0:109:3903:-351.463,-32.8123,0	0/1:23:15,8:15:477:8:284:-18.9797,0,-36.1524	0/1:24:6,18:6:179:18:648:-51.4272,0,-9.17937	0/1:28:7,21:7:216:21:756:-59.9384,0,-11.3142	0/1:84:17,67:17:508:67:2395:-190.515,0,-20.7219	0/1:17:7,10:7:230:10:356:-27.2637,0,-15.9037	1/1:78:0,78:0:0:78:2783:-250.709,-23.4803,0	1/1:45:0,45:0:0:45:1607:-144.919,-13.5464,0	1/1:138:0,138:0:0:138:4907:-441.5,-41.5421,0	1/1:143:2,141:2:72:141:5047:-447.493,-36.2106,0	0/1:57:27,30:27:800:30:1076:-79.9941,0,-55.1205	1/1:107:2,105:2:63:105:3745:-331.266,-26.2271,0	0/1:19:7,12:7:229:12:419:-32.3231,0,-15.21	1/1:95:1,94:1:36:94:3384:-301.158,-24.9996,0	0/1:63:23,40:23:681:40:1424:-109.492,0,-42.6054	1/1:164:0,164:0:0:164:5875:-528.842,-49.3689,0	1/1:99:0,99:0:0:99:3539:-318.719,-29.802,0	0/1:43:10,33:10:317:33:1167:-92.3921,0,-15.8883	1/1:71:0,71:0:0:71:2515:-226.581,-21.3731,0	0/1:73:18,55:18:572:55:1968:-155.42,0,-29.2468	0/1:20:8,12:8:259:12:432:-33.1646,0,-17.6067	1/1:84:1,83:1:36:83:2969:-263.814,-21.6882,0	1/1:65:0,65:0:0:65:2323:-209.33,-19.567,0	1/1:56:2,54:2:72:54:1936:-167.68,-10.021,0	0/1:65:16,49:16:468:49:1731:-136.437,0,-22.7638	0/1:33:12,21:12:384:21:752:-58.0723,0,-24.9357	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:70:0,70:0:0:70:2475:-223.003,-21.0721,0
chr05	8389929	.	GAAT	CAAT,CAAA	132438	PASS	AB=0.629039,0.365206;ABP=329.73,359.521;AC=144,42;AF=0.774194,0.225806;AN=186;AO=5615,841;CIGAR=1X3M,1X2M1X;DP=6477;DPB=6479.25;DPRA=0,0.756915;EPP=12195.8,1829.22;EPPR=5.18177;GTI=10;LEN=1,4;MEANALT=1.73118,2.23529;MQM=59.8322,59.2295;MQMR=60;NS=93;NUMALT=2;ODDS=1729.33;PAIRED=0,0;PAIREDR=0;PAO=4.5,4.5;PQA=158,158;PQR=0;PRO=0;QA=195129,25498;QR=33;RO=1;RPL=5615,841;RPP=12195.8,1829.22;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=5615,841;SAP=12195.8,1829.22;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,28,16:0:0:28,16:946,453:-112.697,-35.9883,-27.5594,-76.8996,0,-72.0831	1/1:84:0,84,0:0:0:84,0:2944,0:-265.133,-25.2865,0,-265.133,-25.2865,-265.133	1/2:144:0,62,81:0:0:62,81:2203,2438:-374.535,-195.007,-176.343,-179.579,0,-155.195	1/1:104:0,102,2:0:0:102,2:3542,60:-318.671,-30.7051,0,-313.875,-25.6079,-313.273	1/1:52:0,51,0:0:0:51,0:1754,0:-157.849,-15.3525,0,-157.849,-15.3525,-157.849	1/1:52:0,49,3:0:0:49,3:1699,93:-152.876,-14.7505,0,-145.412,-6.97526,-144.509	1/2:73:0,54,19:0:0:54,19:1838,585:-196.348,-47.2258,-30.9702,-149.439,0,-143.719	1/1:47:0,47,0:0:0:47,0:1616,0:-145.72,-14.1484,0,-145.72,-14.1484,-145.72	1/2:47:0,37,10:0:0:37,10:1303,299:-130.313,-24.1911,-13.053,-106.432,0,-103.422	1/1:71:0,71,0:0:0:71,0:2480,0:-223.393,-21.3731,0,-223.393,-21.3731,-223.393	1/1:76:0,76,0:0:0:76,0:2661,0:-239.439,-22.8783,0,-239.439,-22.8783,-239.439	1/2:36:0,19,17:0:0:19,17:649,538:-96.2859,-43.6056,-37.886,-53.0085,0,-47.891	1/2:54:0,37,17:0:0:37,17:1272,534:-146.556,-43.2432,-32.1051,-103.637,0,-98.5191	1/2:70:0,49,20:0:0:49,20:1711,644:-191.103,-51.9312,-37.1807,-139.191,0,-133.17	1/1:68:0,68,0:0:0:68,0:2385,0:-214.908,-20.47,0,-214.908,-20.47,-214.908	1/1:47:0,47,0:0:0:47,0:1619,0:-145.995,-14.1484,0,-145.995,-14.1484,-145.995	1/1:78:0,78,0:0:0:78,0:2727,0:-245.673,-23.4803,0,-245.673,-23.4803,-245.673	1/1:42:0,42,0:0:0:42,0:1449,0:-130.7,-12.6433,0,-130.7,-12.6433,-130.7	1/1:37:0,37,0:0:0:37,0:1284,0:-115.858,-11.1381,0,-115.858,-11.1381,-115.858	1/2:119:0,72,46:0:0:72,46:2556,1434:-323.461,-115.175,-93.5012,-208.323,0,-194.475	1/1:93:0,93,0:0:0:93,0:3152,0:-283.901,-27.9958,0,-283.901,-27.9958,-283.901	1/2:40:0,33,7:0:0:33,7:1143,218:-110.516,-17.7617,-7.82768,-93.0202,0,-90.913	1/2:65:0,35,30:0:0:35,30:1237,904:-173.385,-72.6138,-62.0778,-101.096,0,-92.0653	1/1:114:0,114,0:0:0:114,0:4018,0:-361.747,-34.3174,0,-361.747,-34.3174,-361.747	1/1:59:0,59,0:0:0:59,0:2063,0:-185.909,-17.7608,0,-185.909,-17.7608,-185.909	1/1:286:0,286,0:0:0:286,0:10048,0:-904.133,-86.0946,0,-904.133,-86.0946,-904.133	1/2:132:0,94,38:0:0:94,38:3266,1117:-354.921,-89.3653,-61.0685,-265.865,0,-254.426	1/2:24:0,17,7:0:0:17,7:583,225:-65.8059,-18.4586,-13.3411,-47.6749,0,-45.5677	1/1:62:0,58,4:0:0:58,4:2015,112:-181.336,-17.4597,0,-172.465,-8.30499,-171.261	1/2:52:0,30,22:0:0:30,22:1076,637:-138.786,-50.9823,-41.9514,-88.122,0,-81.4993	1/1:113:0,111,1:0:0:111,1:3851,32:-346.288,-33.4143,0,-343.71,-30.8559,-343.409	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:28:0,28,0:0:0:28,0:965,0:-87.123,-8.42884,0,-87.123,-8.42884,-87.123	1/2:21:0,18,2:0:0:18,2:624,67:-56.2047,-5.4627,-0.044164,-50.7794,0,-50.1774	1/1:23:0,23,0:0:0:23,0:789,0:-71.3206,-6.92369,0,-71.3206,-6.92369,-71.3206	1/2:12:0,10,2:0:0:10,2:351,64:-34.0678,-5.47649,-2.46619,-28.9164,0,-28.3143	1/1:176:0,176,0:0:0:176,0:6037,0:-543.227,-52.9813,0,-543.227,-52.9813,-543.227	1/1:141:0,140,1:0:0:140,1:4875,29:-438.545,-42.1442,0,-436.237,-39.5456,-435.936	1/1:86:0,86,0:0:0:86,0:2962,0:-266.813,-25.8886,0,-266.813,-25.8886,-266.813	1/2:4:0,3,1:0:0:3,1:99,34:-11.094,-3.09788,-2.19479,-8.33349,0,-8.03246	1/2:81:0,54,26:0:0:54,26:1853,759:-210.891,-60.4141,-44.1585,-150.437,0,-142.611	1/2:34:0,23,11:0:0:23,11:793,353:-93.2013,-28.7684,-21.8447,-64.7614,0,-61.4501	1/2:95:0,64,31:0:0:64,31:2248,919:-256.438,-73.5961,-54.3301,-183.098,0,-173.767	1/2:41:0,36,5:0:0:36,5:1272,158:-116.617,-13.0278,-2.19073,-103.91,0,-102.405	1/1:67:0,67,0:0:0:67,0:2314,0:-208.249,-20.169,0,-208.249,-20.169,-208.249	1/1:101:0,101,0:0:0:101,0:3519,0:-316.913,-30.404,0,-316.913,-30.404,-316.913	1/1:63:0,62,1:0:0:62,1:2128,28:-191.501,-18.6639,0,-189.285,-16.1666,-188.984	1/2:72:0,37,34:0:0:37,34:1264,992:-181.687,-79.0853,-67.9472,-102.683,0,-92.4484	1/1:92:0,92,0:0:0:92,0:3184,0:-286.729,-27.6948,0,-286.729,-27.6948,-286.729	1/1:128:0,127,1:0:0:127,1:4463,23:-401.612,-38.2308,0,-399.845,-36.2325,-399.544	1/1:51:0,49,0:0:0:49,0:1693,0:-152.272,-14.7505,0,-152.272,-14.7505,-152.272	1/2:10:0,8,2:0:0:8,2:269,64:-27.2813,-5.4766,-3.06836,-22.1279,0,-21.5258	1/1:116:0,116,0:0:0:116,0:4045,0:-363.968,-34.9195,0,-363.968,-34.9195,-363.968	1/1:36:0,36,0:0:0:36,0:1238,0:-111.717,-10.8371,0,-111.717,-10.8371,-111.717	1/2:38:0,30,8:0:0:30,8:1033,241:-103.501,-19.5764,-10.5455,-84.235,0,-81.8268	1/2:72:0,49,23:0:0:49,23:1698,686:-193.136,-55.0985,-40.348,-138.351,0,-131.427	1/1:56:0,56,0:0:0:56,0:1956,0:-176.311,-16.8577,0,-176.311,-16.8577,-17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chr05	8460790	.	T	C	21826.1	PASS	AB=0.539451;ABP=34.5358;AC=46;AF=0.244681;AN=188;AO=1265;CIGAR=1X;DP=5080;DPB=5080;DPRA=0.9005;EPP=2689.46;EPPR=8045.76;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=59.989;NS=94;NUMALT=1;ODDS=0.390989;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45135;QR=136619;RO=3815;RPL=7;RPP=2689.46;RPPR=8045.76;RPR=1258;RUN=1;SAF=1265;SAP=2749.92;SAR=0;SRF=3815;SRP=8287.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/1:46:24,22:24:860:22:783:-56.9456,0,-63.8745	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:73:37,36:37:1332:36:1283:-93.7974,0,-98.2072	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/1:56:27,29:27:972:29:1032:-76.3358,0,-70.9402	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:40:19,21:19:684:21:756:-56.326,0,-49.8491	0/1:40:21,19:21:739:19:684:-49.8491,0,-54.7912	0/1:44:22,22:22:788:22:783:-57.5476,0,-57.9995	0/0:29:27,2:27:972:2:72:0,-1.89315,-80.9612	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:106:51,55:51:1836:55:1972:-145.846,0,-133.611	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/1:72:37,35:37:1319:35:1241:-90.3183,0,-97.337	0/1:46:24,22:24:860:22:792:-57.7583,0,-63.8745	0/1:56:25,31:25:892:31:1108:-83.1727,0,-63.742	0/0:52:52,0:52:1844:0:0:0,-15.6536,-166.238	0/0:202:202,0:202:7222:0:0:0,-60.8081,-650.031	0/1:127:70,57:70:2516:57:2022:-144.021,0,-187.971	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:133:59,74:59:2116:74:2652:-198.889,0,-150.672	0/1:149:69,80:69:2472:80:2860:-212.784,0,-177.88	0/0:73:73,0:73:2594:0:0:0,-21.9752,-233.706	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:130:130,0:130:4672:0:0:0,-39.1339,-420.639	0/0:108:108,0:108:3834:0:0:0,-32.5112,-345.256	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:66:34,32:34:1220:32:1139:-82.9504,0,-90.2388	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	0/1:49:25,24:25:896:24:856:-62.6106,0,-66.2099	0/1:25:12,13:12:432:13:464:-34.5718,0,-31.6954	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.659	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.787	0/1:122:47,75:47:1680:75:2672:-204.001,0,-114.761	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.035	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:56:23,33:23:828:33:1176:-89.2901,0,-57.9864	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.5363	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:70:25,45:25:900:45:1608:-123.938,0,-60.2489	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:113:54,59:54:1912:59:2099:-155.163,0,-138.338	0/1:152:64,88:64:2296:88:3139:-236.979,0,-161.145	0/1:40:23,17:23:828:17:612:-43.3722,0,-62.8029	0/1:70:27,43:27:972:43:1523:-116.29,0,-66.7258	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.438	0/1:79:22,57:22:788:57:2044:-160.45,0,-47.4634	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:37:9,28:9:324:28:1000:-79.1773,0,-18.3677	0/1:44:21,23:21:752:23:816:-60.5164,0,-54.7609	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/0:56:55,1:55:1972:1:36:0,-13.2594,-174.157	0/1:67:41,26:41:1468:26:912:-62.225,0,-112.247	0/0:48:48,0:48:1706:0:0:0,-14.4494,-153.824	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/0:51:50,1:50:1792:1:36:0,-11.7543,-157.964	0/1:46:23,23:23:824:23:824:-60.6359,0,-60.6359	0/0:92:91,1:91:3241:1:36:0,-24.0965,-288.313	0/0:70:69,1:69:2467:1:36:0,-17.4738,-218.685	0/1:32:17,15:17:603:15:532:-38.5801,0,-44.9665	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:60:26,34:26:932:34:1212:-91.3245,0,-66.1371	0/1:33:12,21:12:423:21:756:-58.4332,0,-28.4711	0/0:64:64,0:64:2295:0:0:0,-19.2659,-206.81	0/0:48:47,1:47:1679:1:36:0,-10.8512,-147.798	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:43:20,23:20:720:23:811:-60.3657,0,-52.1845	0/1:31:8,23:8:288:23:824:-65.1514,0,-16.9355	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659
chr05	8881423	.	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chr05	9165288	.	CTT	TTC,CTC	145742	PASS	AB=0.504808,0.493269;ABP=3.63669,4.23802;AC=136,48;AF=0.73913,0.26087;AN=184;AO=5339,1562;CIGAR=1X1M1X,2M1X;DP=6919;DPB=6919.33;DPRA=38.4167,0.874172;EPP=11596.5,3394.85;EPPR=5.18177;GTI=2;LEN=3,1;MEANALT=1.76667,2.05357;MQM=53.4705,53.7202;MQMR=60;NS=92;NUMALT=2;ODDS=0.640757;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=188446,55662;QR=36;RO=1;RPL=0,0;RPP=11596.5,3394.85;RPPR=5.18177;RPR=5339,1562;RUN=1,1;SAF=5339,1562;SAP=11596.5,3394.85;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,28,12:0:0:28,12:999,432:-116.331,-35.5102,-27.0814,-81.178,0,-77.5657	1/1:83:0,83,0:0:0:83,0:2960,0:-264.32,-24.9855,0,-264.32,-24.9855,-264.32	1/2:40:0,23,17:0:0:23,17:805,612:-115.273,-50.1454,-43.2217,-65.4817,0,-60.3642	1/1:181:0,180,1:0:0:180,1:6353,36:-570.275,-54.1854,0,-567.338,-50.8882,-567.037	1/1:62:0,60,2:0:0:60,2:2143,72:-192.117,-18.0618,0,-186.251,-11.8368,-185.649	1/1:56:0,56,0:0:0:56,0:1998,0:-177.12,-16.8577,0,-177.12,-16.8577,-177.12	1/2:146:0,75,71:0:0:75,71:2638,2532:-418.934,-205.497,-182.92,-213.788,0,-192.415	1/1:84:0,84,0:0:0:84,0:2930,0:-263.014,-25.2865,0,-263.014,-25.2865,-263.014	1/2:76:0,44,31:0:0:44,31:1558,1116:-216.047,-90.5939,-77.3485,-125.451,0,-116.119	1/1:118:0,116,2:0:0:116,2:4080,72:-364.796,-34.9195,0,-358.928,-28.6921,-358.326	1/1:34:0,34,0:0:0:34,0:1202,0:-108.343,-10.235,0,-108.343,-10.235,-108.343	1/2:69:0,30,39:0:0:30,39:1040,1374:-195.178,-111.226,-102.195,-84.2983,0,-72.5581	1/2:67:0,35,32:0:0:35,32:1247,1144:-193.375,-92.5655,-82.0294,-101.163,0,-91.5299	1/2:29:0,11,18:0:0:11,18:374,648:-83.3096,-53.021,-49.7097,-30.6353,0,-25.2167	1/1:67:0,66,1:0:0:66,1:2336,36:-209.887,-19.868,0,-206.949,-16.5707,-206.648	1/1:32:0,32,0:0:0:32,0:1140,0:-102.061,-9.63296,0,-102.061,-9.63296,-102.061	1/1:45:0,45,0:0:0:45,0:1596,0:-142.116,-13.5464,0,-142.116,-13.5464,-142.116	1/1:49:0,49,0:0:0:49,0:1730,0:-154.001,-14.7505,0,-154.001,-14.7505,-154.001	1/1:23:0,23,0:0:0:23,0:825,0:-73.1705,-6.92369,0,-73.1705,-6.92369,-73.1705	1/2:200:0,110,90:0:0:110,90:3864,3208:-574.813,-261.48,-228.367,-313.686,0,-286.594	1/1:138:0,136,0:0:0:136,0:4785,0:-428.625,-40.9401,0,-428.625,-40.9401,-428.625	1/2:48:0,19,29:0:0:19,29:678,1040:-139.26,-84.5492,-78.8296,-55.0655,0,-46.3356	1/2:83:0,44,39:0:0:44,39:1555,1396:-240.116,-113.89,-100.645,-126.581,0,-114.84	1/2:109:0,65,44:0:0:65,44:2288,1543:-310.423,-125.062,-105.495,-185.71,0,-172.464	1/1:44:0,44,0:0:0:44,0:1563,0:-139.139,-13.2453,0,-139.139,-13.2453,-139.139	1/1:192:0,192,0:0:0:192,0:6785,0:-608.534,-57.7978,0,-608.534,-57.7978,-608.534	1/2:178:0,96,81:0:0:96,81:3381,2887:-508.587,-234.439,-205.54,-274.27,0,-249.887	1/2:34:0,18,16:0:0:18,16:648,568:-99.0766,-46.4352,-41.0167,-52.9971,0,-48.1807	1/2:202:0,103,99:0:0:103,99:3629,3470:-576.744,-281.464,-250.458,-295.63,0,-265.828	1/2:85:0,38,47:0:0:38,47:1332,1684:-244.285,-137.142,-125.702,-107.495,0,-93.3461	1/1:103:0,103,0:0:0:103,0:3610,0:-323.311,-31.0061,0,-323.311,-31.0061,-323.311	1/2:7:0,3,3:0:0:3,3:108,108:-17.597,-8.79848,-7.89539,-8.79848,0,-7.89539	1/1:13:0,13,0:0:0:13,0:468,0:-42.3959,-3.91339,0,-42.3959,-3.91339,-42.3959	2/2:2:0,0,2:0:0:0,2:0,72:-6.81953,-6.81953,-6.81953,-0.60206,-0.60206,0	.:.:.:.:.:.:.:.	1/2:4:0,3,1:0:0:3,1:108,36:-12.0703,-3.28202,-2.37893,-9.14675,0,-8.84572	1/1:184:0,183,0:0:0:183,0:6473,0:-580.962,-55.0885,0,-580.962,-55.0885,-580.962	1/1:76:0,76,0:0:0:76,0:2691,0:-241.864,-22.8783,0,-241.864,-22.8783,-241.864	1/1:73:0,73,0:0:0:73,0:2601,0:-231.575,-21.9752,0,-231.575,-21.9752,-231.575	.:.:.:.:.:.:.:.	1/2:136:0,79,57:0:0:79,57:2770,2036:-389.246,-165.404,-141.623,-224.194,0,-207.036	1/2:29:0,12,17:0:0:12,17:424,606:-83.8156,-49.5266,-45.9143,-34.6415,0,-29.524	1/2:112:0,73,39:0:0:73,39:2570,1396:-321.869,-113.859,-91.8841,-208.364,0,-196.624	1/2:77:0,29,48:0:0:29,48:1032,1720:-223.581,-139.677,-130.948,-84.2592,0,-69.8098	1/1:72:0,72,0:0:0:72,0:2526,0:-226.701,-21.6742,0,-226.701,-21.6742,-226.701	1/1:90:0,90,0:0:0:90,0:3174,0:-285.161,-27.0927,0,-285.161,-27.0927,-285.161	1/1:42:0,42,0:0:0:42,0:1488,0:-133.51,-12.6433,0,-133.51,-12.6433,-133.51	1/2:134:0,63,71:0:0:63,71:2238,2515:-385.764,-204.471,-185.506,-181.646,0,-160.273	1/1:112:0,112,0:0:0:112,0:3974,0:-356.569,-33.7154,0,-356.569,-33.7154,-356.569	1/1:141:0,140,0:0:0:140,0:4956,0:-443.603,-42.1442,0,-443.603,-42.1442,-443.603	1/1:137:0,137,0:0:0:137,0:4842,0:-435.28,-41.2411,0,-435.28,-41.2411,-435.28	1/2:5:0,3,2:0:0:3,2:108,72:-15.0327,-6.22973,-5.32664,-9.16247,0,-8.56041	1/1:53:0,53,0:0:0:53,0:1868,0:-167.81,-15.9546,0,-167.81,-15.9546,-167.81	1/1:34:0,34,0:0:0:34,0:1191,0:-106.876,-10.235,0,-106.876,-10.235,-106.876	1/2:9:0,3,6:0:0:3,6:108,216:-26.5387,-17.7497,-16.8467,-9.14675,0,-7.34057	1/2:76:0,41,34:0:0:41,34:1449,1216:-215.594,-98.5395,-86.1973,-117.049,0,-106.814	1/1:54:0,52,2:0:0:52,2:1813,72:-162.934,-15.6536,0,-157.09,-9.45125,-156.488	2/2:2:0,0,2:0:0:0,2:0,72:-6.69917,-6.69917,-6.69917,-0.60206,-0.60206,0	1/2:17:0,8,9:0:0:8,9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chr05	9165320	.	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chr05	9494475	.	GCT	GCC,ACC	253774	PASS	AB=0.504586,0.491711;ABP=4.04587,6.39427;AC=141,47;AF=0.75,0.25;AN=188;AO=9130,2811;CIGAR=2M1X,1X1M1X;DP=11988;DPB=11990.3;DPRA=0,1.06964;EPP=19828.6,6107.02;EPPR=13.8677;GTI=3;LEN=1,3;MEANALT=2.05319,2.43103;MQM=59.9793,59.8691;MQMR=60;NS=94;NUMALT=2;ODDS=0.841778;PAIRED=0,0;PAIREDR=0;PAO=3.5,3.5;PQA=70,70;PQR=0;PRO=0;QA=325916,96200;QR=170;RO=5;RPL=0,0;RPP=19828.6,6107.02;RPPR=13.8677;RPR=9130,2811;RUN=1,1;SAF=9130,2811;SAP=19828.6,6107.02;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:60:0,25,34:0:0:25,34:892,1200:-170.155,-97.4359,-89.9102,-72.7142,0,-62.4792	1/1:248:0,246,1:0:0:246,1:8775,36:-789.383,-74.0534,0,-786.446,-71.116,-786.145	1/2:163:0,92,71:0:0:92,71:3271,2435:-464.592,-198.024,-170.329,-266.917,0,-245.543	1/1:313:0,310,2:0:0:310,2:11059,72:-994.845,-93.3193,0,-988.97,-87.4445,-988.368	1/1:123:0,123,0:0:0:123,0:4384,0:-394.674,-37.0267,0,-394.674,-37.0267,-394.674	1/1:100:0,96,4:0:0:96,4:3432,138:-308.749,-28.8989,0,-297.538,-17.3428,-296.334	1/2:216:0,115,101:0:0:115,101:4092,3445:-613.016,-279.833,-245.214,-333.531,0,-303.127	1/1:251:0,251,0:0:0:251,0:8958,0:-806.089,-75.5585,0,-806.089,-75.5585,-806.089	1/2:115:0,41,74:0:0:41,74:1468,2558:-327.908,-208.188,-195.846,-120.074,0,-97.7976	1/1:136:0,136,0:0:0:136,0:4864,0:-437.914,-40.9401,0,-437.914,-40.9401,-437.914	1/1:65:0,65,0:0:0:65,0:2297,0:-206.99,-19.567,0,-206.99,-19.567,-206.99	1/2:104:0,56,48:0:0:56,48:1995,1645:-296.5,-133.884,-117.026,-162.966,0,-148.516	1/2:91:0,38,53:0:0:38,53:1360,1804:-257.592,-146.681,-135.242,-111.261,0,-95.3069	1/2:57:0,30,27:0:0:30,27:1071,926:-162.841,-75.5198,-66.4889,-87.6707,0,-79.5429	1/1:64:0,64,0:0:0:64,0:2292,0:-206.541,-19.2659,0,-206.541,-19.2659,-206.541	1/1:53:1,52,0:1:34:52,0:1847,0:-163.11,-12.5557,0,-163.412,-15.6536,-166.169	1/1:60:0,60,0:0:0:60,0:2143,0:-193.078,-18.0618,0,-193.078,-18.0618,-193.078	1/1:64:0,64,0:0:0:64,0:2292,0:-206.541,-19.2659,0,-206.541,-19.2659,-206.541	1/1:60:0,60,0:0:0:60,0:2133,0:-192.237,-18.0618,0,-192.237,-18.0618,-192.237	1/2:420:0,222,197:0:0:222,197:7947,6689:-1190.53,-542.449,-475.621,-648.064,0,-588.762	1/1:203:0,201,2:0:0:201,2:7182,64:-646.117,-60.507,0,-640.961,-55.031,-640.359	1/2:172:0,80,91:0:0:80,91:2840,3109:-483.744,-252.335,-228.252,-231.447,0,-204.053	1/2:141:0,77,64:0:0:77,64:2748,2174:-400.687,-176.651,-153.472,-224.383,0,-205.118	1/2:176:0,94,80:0:0:94,80:3364,2748:-497.477,-223.147,-194.85,-274.344,0,-250.262	1/1:100:0,98,1:0:0:98,1:3487,34:-313.692,-29.5009,0,-310.935,-26.7529,-310.633	1/1:281:0,275,5:0:0:275,5:9818,173:-883.222,-82.7833,0,-869.164,-68.7196,-867.659	1/2:260:0,107,151:0:0:107,151:3828,5146:-729.721,-417.565,-385.355,-312.226,0,-266.77	1/2:52:0,30,22:0:0:30,22:1072,773:-150.607,-63.1988,-54.1679,-87.7616,0,-81.1389	1/2:457:0,244,212:0:0:244,212:8743,7250:-1301.37,-588.401,-514.949,-712.962,0,-649.143	1/2:144:0,79,65:0:0:79,65:2828,2213:-410.492,-179.862,-156.081,-230.978,0,-211.411	1/1:224:0,224,0:0:0:224,0:7997,0:-719.753,-67.4307,0,-719.753,-67.4307,-719.753	1/2:10:0,9,1:0:0:9,1:316,36:-29.0079,-3.29724,-0.587975,-26.0696,0,-25.7686	1/1:23:0,23,0:0:0:23,0:820,0:-74.1225,-6.92369,0,-74.1225,-6.92369,-74.1225	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:30:0,26,4:0:0:26,4:926,137:-86.9497,-11.4637,-3.6369,-75.8302,0,-74.6261	1/1:212:0,212,0:0:0:212,0:7578,0:-682.059,-63.8184,0,-682.059,-63.8184,-682.059	1/1:213:0,213,0:0:0:213,0:7620,0:-685.836,-64.1194,0,-685.836,-64.1194,-685.836	1/1:62:0,61,0:0:0:61,0:2166,0:-194.846,-18.3628,0,-194.846,-18.3628,-194.846	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/2:234:0,117,116:0:0:117,116:4168,3979:-662.728,-322.996,-287.775,-339.722,0,-304.803	1/2:40:0,20,19:0:0:20,19:716,670:-113.046,-54.651,-48.6304,-58.492,0,-52.7724	1/2:188:0,105,82:0:0:105,82:3742,2783:-530.696,-225.67,-194.062,-305.014,0,-280.329	1/2:97:0,37,60:0:0:37,60:1324,2078:-277.126,-169.156,-158.017,-108.324,0,-90.2622	1/1:85:0,83,1:0:0:83,1:2945,36:-264.978,-24.9855,0,-262.04,-21.9932,-261.739	1/1:119:1,117,0:1:36:117,0:4167,0:-371.615,-32.2831,0,-371.916,-35.2205,-374.854	1/1:228:0,225,0:0:0:225,0:8036,0:-722.972,-67.7318,0,-722.972,-67.7318,-722.972	1/2:249:0,118,131:0:0:118,131:4211,4409:-700.848,-357.546,-322.025,-343.649,0,-304.214	1/1:159:0,159,0:0:0:159,0:5680,0:-511.261,-47.8638,0,-511.261,-47.8638,-511.261	1/1:161:0,161,0:0:0:161,0:5752,0:-517.797,-48.4658,0,-517.797,-48.4658,-517.797	1/1:273:0,270,0:0:0:270,0:9617,0:-865.126,-81.2781,0,-865.126,-81.2781,-865.126	1/2:10:0,1,9:0:0:1,9:36,308:-28.2806,-25.3415,-25.0404,-3.29724,0,-0.587975	1/1:172:0,170,0:0:0:170,0:6084,0:-547.302,-51.1751,0,-547.302,-51.1751,-547.302	1/1:73:0,73,0:0:0:73,0:2608,0:-234.968,-21.9752,0,-234.968,-21.9752,-234.968	1/2:9:0,4,5:0:0:4,5:140,163:-24.8869,-13.4856,-12.2815,-11.7405,0,-10.2353	1/2:189:1,108,79:1:28:108,79:3856,2741:-534.714,-220.641,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chr05	10378647	.	G	A	80101.7	PASS	AB=0.517699;ABP=8.54467;AC=141;AF=0.75;AN=188;AO=3738;CIGAR=1X;DP=4726;DPB=4726;DPRA=25.663;EPP=8111.29;EPPR=2111.59;GTI=3;LEN=1;MEANALT=1.05435;MQM=59.97;MQMR=59.9481;NS=94;NUMALT=1;ODDS=0.311074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133964;QR=34970;RO=983;RPL=3737;RPP=8111.29;RPPR=2111.59;RPR=1;RUN=1;SAF=0;SAP=8119.97;SAR=3738;SRF=0;SRP=2137.57;SRR=983;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:13,28:13:468:28:1008:-78.3343,0,-29.7576	1/1:58:0,58:0:0:58:2084:-187.813,-17.4597,0	0/1:48:21,27:21:743:27:968:-72.9876,0,-52.7439	1/1:66:0,66:0:0:66:2364:-213.01,-19.868,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:31:12,19:12:410:19:684:-52.5584,0,-27.8946	1/1:99:0,99:0:0:99:3543:-319.078,-29.802,0	0/1:81:37,44:37:1304:44:1576:-117.748,0,-93.2779	1/1:52:0,52:0:0:52:1868:-168.397,-15.6536,0	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	0/1:67:27,40:27:959:40:1436:-109.366,0,-66.4564	0/1:35:22,13:22:783:13:464:-31.5615,0,-60.2569	0/1:33:16,17:16:564:17:610:-45.2988,0,-41.1563	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:37:0,37:0:0:37:1332:-120.178,-11.1381,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:62:30,32:30:1072:32:1148:-84.966,0,-78.1286	1/1:128:0,128:0:0:128:4569:-411.375,-38.5318,0	0/1:47:27,20:27:956:20:690:-48.2684,0,-72.2073	0/1:66:30,36:30:1076:36:1283:-95.9046,0,-77.2849	1/1:19:0,19:0:0:19:680:-61.5245,-5.71957,0	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:172:0,172:0:0:172:6184:-556.653,-51.7772,0	0/1:82:43,39:43:1528:39:1396:-101.255,0,-113.129	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	0/1:131:79,52:79:2807:52:1872:-129.324,0,-213.391	0/1:44:20,24:20:720:24:860:-64.4765,0,-51.8835	1/1:38:0,38:0:0:38:1356:-122.337,-11.4391,0	0/1:11:2,9:2:68:9:324:-26.1945,0,-3.14638	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:173:1,172:1:36:172:6183:-552.966,-48.4799,0	1/1:100:0,100:0:0:100:3592:-323.486,-30.103,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:35:16,18:16:576:18:648:-48.057,0,-41.5801	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/1:90:46,44:46:1604:44:1584:-115.759,0,-117.554	0/1:31:16,15:16:572:15:540:-39.6046,0,-42.4815	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:95:0,95:0:0:95:3407:-306.844,-28.5979,0	1/1:72:0,72:0:0:72:2571:-231.639,-21.6742,0	0/1:61:24,37:24:860:37:1332:-101.82,0,-59.359	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:88:1,87:1:36:87:3124:-277.787,-22.8924,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	1/1:25:1,24:1:36:24:849:-73.1296,-3.92748,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:60:18,42:18:644:42:1508:-117.953,0,-40.2288	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:11:2,9:2:68:9:324:-26.1945,0,-3.14638	1/1:44:0,44:0:0:44:1569:-141.5,-13.2453,0	0/1:117:59,58:59:2108:58:2080:-151.98,0,-154.768	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:71:37,33:37:1323:33:1176:-84.7159,0,-97.9394	0/1:97:32,65:32:1140:65:2326:-180.392,0,-73.7093	0/1:41:25,16:25:879:16:576:-39.8328,0,-67.0846	0/1:36:26,10:26:936:10:360:-21.9072,0,-73.7224	1/1:123:0,123:0:0:123:4411:-397.147,-37.0267,0	0/1:105:74,31:74:2643:31:1107:-68.332,0,-206.438	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:27:11,15:11:388:15:532:-40.0268,0,-27.0714	0/1:24:8,16:8:280:16:576:-44.9503,0,-18.3146	0/1:14:6,8:6:212:8:284:-21.6889,0,-15.2104	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:94:0,94:0:0:94:3359:-302.526,-28.2968,0	1/1:69:0,69:0:0:69:2480:-223.451,-20.7711,0	0/1:53:8,44:8:284:44:1584:-126.838,0,-9.89052	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:29:15,14:15:528:14:485:-35.2471,0,-39.1215	1/1:111:0,111:0:0:111:3972:-357.669,-33.4143,0	1/1:58:0,58:0:0:58:2074:-186.93,-17.4597,0	0/1:35:17,18:17:604:18:644:-47.7545,0,-44.1546	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:119:60,59:60:2143:59:2124:-155.606,0,-157.27	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	1/1:65:0,65:0:0:65:2315:-208.61,-19.567,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:60:27,33:27:968:33:1168:-87.3654,0,-69.3756	0/1:45:26,19:26:924:19:680:-47.9828,0,-69.9313	1/1:31:0,31:0:0:31:1099:-99.2189,-9.33193,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0
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chr05	10551259	.	T	C	102992	PASS	AB=0.456927;ABP=58.3816;AC=139;AF=0.739362;AN=188;AO=4948;CIGAR=1X;DP=6897;DPB=6897;DPRA=37.0699;EPP=10678.1;EPPR=4226.52;GTI=4;LEN=1;MEANALT=1.04301;MQM=59.9869;MQMR=59.9686;NS=94;NUMALT=1;ODDS=0.751203;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176197;QR=69675;RO=1945;RPL=1;RPP=10738.8;RPPR=4226.52;RPR=4947;RUN=1;SAF=7;SAP=10686.7;SAR=4941;SRF=0;SRP=4226.52;SRR=1945;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	1/1:59:0,59:0:0:59:2106:-189.808,-17.7608,0	0/1:153:60,93:60:2160:93:3324:-253.321,0,-148.609	1/1:212:1,211:1:36:211:7557:-676.565,-60.2201,0	1/1:18:0,18:0:0:18:625:-56.5725,-5.41854,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:114:73,41:73:2624:41:1454:-96.837,0,-202.089	1/1:81:0,81:0:0:81:2866:-258.175,-24.3834,0	0/1:54:23,31:23:820:31:1112:-84.1357,0,-57.8669	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:43:0,43:0:0:43:1511:-136.282,-12.9443,0	0/1:71:30,41:30:1068:41:1456:-109.961,0,-75.0589	0/1:83:44,39:44:1576:39:1396:-100.954,0,-117.146	0/1:42:21,21:21:747:21:746:-54.8217,0,-54.911	1/1:54:0,54:0:0:54:1892:-170.554,-16.2556,0	1/1:49:0,49:0:0:49:1727:-155.712,-14.7505,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:24:0,24:0:0:24:855:-77.2702,-7.22472,0	0/1:136:73,63:73:2620:63:2264:-163.082,0,-194.737	1/1:144:0,144:0:0:144:5137:-462.471,-43.3483,0	0/1:93:80,13:80:2864:13:468:-14.4639,0,-230.002	0/1:64:20,44:20:720:44:1572:-122.506,0,-45.8629	0/1:98:51,47:51:1832:47:1676:-121.626,0,-135.66	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:135:2,133:2:72:133:4728:-418.843,-33.8023,0	0/1:203:99,104:99:3533:104:3700:-272.084,0,-257.069	0/1:29:19,10:19:684:10:344:-22.5622,0,-53.1605	0/1:173:82,91:82:2940:91:3272:-242.621,0,-212.756	0/1:165:85,80:85:3044:80:2871:-208.956,0,-224.52	1/1:101:0,101:0:0:101:3622:-326.185,-30.404,0	0/1:5:4,1:4:129:1:36:-2.09312,0,-10.4225	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:175:1,174:1:36:174:6199:-554.41,-49.082,0	1/1:97:0,96:0:0:96:3421:-307.744,-28.8989,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:216:119,97:119:4271:97:3462:-246.769,0,-319.544	0/1:38:21,17:21:752:17:612:-43.9743,0,-56.5671	0/1:91:52,39:52:1864:39:1373:-96.4729,0,-140.646	0/1:68:45,23:45:1603:23:819:-53.5615,0,-124.089	1/1:54:0,54:0:0:54:1887:-170.103,-16.2556,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:53:0,53:0:0:53:1877:-169.207,-15.9546,0	0/1:152:74,78:74:2656:78:2787:-205.314,0,-193.529	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:68:1,67:1:36:67:2357:-208.789,-16.8718,0	1/1:102:2,100:2:72:100:3553:-313.142,-23.8683,0	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	1/1:238:0,238:0:0:238:8457:-761.136,-71.6451,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:17:12,5:12:428:5:180:-11.4205,0,-33.7413	0/1:98:34,63:34:1224:63:2217:-170.233,0,-80.9073	1/1:41:1,40:1:36:40:1428:-125.219,-8.74396,0	1/1:4:0,4:0:0:4:144:-13.3127,-1.20412,0	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	1/1:52:0,52:0:0:52:1850:-166.779,-15.6536,0	0/1:94:54,40:54:1936:40:1398:-97.8157,0,-146.22	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:172:98,74:98:3524:74:2629:-185.077,0,-265.591	0/1:142:75,67:75:2688:67:2389:-172.519,0,-199.418	0/1:48:34,14:34:1220:14:500:-30.8867,0,-95.6574	0/1:44:16,28:16:567:28:1004:-77.4305,0,-38.1154	1/1:108:0,108:0:0:108:3817:-343.727,-32.5112,0	0/1:77:61,16:61:2196:16:565:-28.0001,0,-173.706	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/1:54:36,18:36:1284:18:640:-41.6737,0,-99.6078	0/1:70:46,24:46:1643:24:856:-56.289,0,-127.086	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	1/1:104:0,104:0:0:104:3701:-333.274,-31.3071,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0	1/1:203:1,202:1:36:202:7209:-645.264,-57.5108,0	0/0:76:69,7:69:2448:7:239:0,-1.03556,-198.73	1/1:47:0,46:0:0:46:1656:-148.969,-13.8474,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:109:0,109:0:0:109:3885:-349.844,-32.8123,0	0/1:66:35,31:35:1256:31:1100:-79.4423,0,-93.4773	1/1:111:0,111:0:0:111:3964:-356.951,-33.4143,0	1/1:50:0,50:0:0:50:1794:-161.742,-15.0515,0	0/1:49:26,23:26:927:23:816:-59.0112,0,-68.9969	1/1:39:0,39:0:0:39:1375:-124.048,-11.7402,0	0/1:116:66,50:66:2368:50:1774:-125.022,0,-178.459	0/1:32:28,4:28:1004:4:144:-3.68066,0,-81.0429	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:52:0,52:0:0:52:1828:-164.799,-15.6536,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:100:39,61:39:1400:61:2172:-165.644,0,-96.1962	0/1:87:64,23:64:2291:23:824:-48.2937,0,-180.261	1/1:83:0,83:0:0:83:2942:-265.012,-24.9855,0	1/1:102:0,101:0:0:101:3588:-322.768,-30.404,0
chr05	10551283	.	A	T	103213	PASS	AB=0.450753;ABP=75.7282;AC=140;AF=0.744681;AN=188;AO=4914;CIGAR=1X;DP=6823;DPB=6823;DPRA=36.672;EPP=10492;EPPR=4018.96;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9748;MQMR=59.968;NS=94;NUMALT=1;ODDS=0.447187;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175116;QR=67926;RO=1905;RPL=4899;RPP=10543.7;RPPR=4018.96;RPR=15;RUN=1;SAF=6;SAP=10621.6;SAR=4908;SRF=0;SRP=4139.67;SRR=1905;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:16,7:16:572:7:252:-16.1053,0,-44.8897	1/1:60:0,60:0:0:60:2125:-191.517,-18.0618,0	0/1:152:60,92:60:2148:92:3271:-248.854,0,-147.831	1/1:215:1,214:1:36:214:7618:-682.06,-61.1232,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:110:71,39:71:2552:39:1394:-92.6448,0,-196.817	1/1:78:0,78:0:0:78:2781:-250.53,-23.4803,0	0/1:54:24,30:24:852:30:1065:-79.9041,0,-60.7448	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:70:29,40:29:1027:40:1432:-108.047,0,-71.6115	0/1:83:44,39:44:1580:39:1400:-101.314,0,-117.506	0/1:42:22,20:22:783:20:720:-52.4855,0,-58.1497	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:136:75,61:75:2668:61:2181:-155.614,0,-199.054	1/1:146:0,146:0:0:146:5205:-468.585,-43.9504,0	0/1:90:77,13:77:2724:13:468:-15.3669,0,-218.31	0/1:64:20,44:20:697:44:1576:-122.866,0,-43.7847	0/1:96:50,46:50:1788:46:1630:-118.087,0,-132.304	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:137:2,135:2:72:135:4796:-424.96,-34.4044,0	0/1:203:100,103:100:3557:103:3688:-271.014,0,-259.229	0/1:28:18,10:18:648:10:356:-23.9524,0,-50.223	0/1:171:79,92:79:2813:92:3248:-241.067,0,-201.932	0/1:162:82,80:82:2944:80:2824:-205.631,0,-216.427	1/1:98:0,98:0:0:98:3497:-314.94,-29.5009,0	0/1:5:4,1:4:140:1:32:-1.69416,0,-11.4394	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:173:2,171:2:72:171:6116:-543.692,-45.2415,0	1/1:97:0,97:0:0:97:3460:-311.613,-29.1999,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:212:116,96:116:4139:96:3425:-244.644,0,-308.876	0/1:39:21,17:21:752:17:612:-43.6145,0,-56.2074	0/1:90:49,41:49:1752:41:1464:-104.963,0,-130.871	0/1:66:43,23:43:1521:23:810:-53.3507,0,-117.313	1/1:55:0,55:0:0:55:1949:-175.684,-16.5567,0	1/1:33:0,33:0:0:33:1165:-105.155,-9.93399,0	1/1:50:0,50:0:0:50:1780:-160.482,-15.0515,0	0/1:149:71,78:71:2524:78:2773:-204.957,0,-182.556	1/1:56:0,56:0:0:56:2004:-180.633,-16.8577,0	1/1:68:1,67:1:36:67:2393:-212.027,-16.8718,0	1/1:103:2,101:2:72:101:3588:-316.292,-24.1694,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:236:0,236:0:0:236:8409:-756.814,-71.0431,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:95:32,63:32:1148:63:2244:-173.623,0,-75.032	1/1:40:1,39:1:36:39:1376:-120.54,-8.44293,0	1/1:4:0,4:0:0:4:144:-13.3127,-1.20412,0	0/1:15:9,6:9:309:6:216:-15.2751,0,-23.6253	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:95:58,37:58:2063:37:1319:-90.4133,0,-157.343	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:162:91,71:91:3255:71:2496:-176.123,0,-244.404	0/1:139:73,65:73:2616:65:2318:-166.979,0,-193.786	0/1:45:34,11:34:1203:11:396:-22.4364,0,-95.0287	0/1:42:16,26:16:568:26:932:-71.5556,0,-38.8086	1/1:106:0,105:0:0:105:3707:-333.458,-31.6082,0	0/1:74:57,17:57:2020:17:597:-31.6707,0,-158.774	0/1:20:10,10:10:343:10:360:-26.7237,0,-25.18	0/1:51:34,17:34:1212:17:608:-39.6995,0,-94.0338	0/1:71:47,24:47:1688:24:856:-55.988,0,-130.834	0/1:23:11,12:11:392:12:424:-31.5727,0,-28.6964	1/1:105:0,105:0:0:105:3734:-336.258,-31.6082,0	1/1:74:0,74:0:0:74:2638:-237.667,-22.2762,0	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	1/1:203:1,202:1:36:202:7205:-644.909,-57.5108,0	0/1:74:67,7:67:2387:7:252:-0.752741,0,-192.811	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:109:0,109:0:0:109:3895:-350.734,-32.8123,0	0/1:65:34,31:34:1220:31:1108:-80.464,0,-90.5399	1/1:110:0,110:0:0:110:3918:-352.811,-33.1133,0	1/1:53:0,53:0:0:53:1884:-169.837,-15.9546,0	0/1:48:25,23:25:900:23:824:-60.0339,0,-66.8716	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:114:65,49:65:2331:49:1747:-123.196,0,-175.731	0/1:33:28,5:28:1000:5:176:-6.25103,0,-80.3814	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:38:0,38:0:0:38:1358:-122.52,-11.4391,0	0/1:100:38,62:38:1351:62:2183:-166.633,0,-91.7866	0/1:86:64,22:64:2263:22:773:-44.0009,0,-178.042	1/1:82:0,82:0:0:82:2927:-263.665,-24.6845,0	1/1:102:0,102:0:0:102:3668:-330.322,-30.7051,0
chr05	10634497	.	A	G	25170.1	PASS	AB=0.373062;ABP=671.165;AC=48;AF=0.255319;AN=188;AO=1787;CIGAR=1X;DP=11520;DPB=11520;DPRA=0.785495;EPP=3883.43;EPPR=21118.4;GTI=7;LEN=1;MEANALT=1.01887;MQM=59.9396;MQMR=44.6457;NS=94;NUMALT=1;ODDS=5.71674;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63682;QR=343476;RO=9732;RPL=0;RPP=3883.43;RPPR=8.58044;RPR=1787;RUN=1;SAF=0;SAP=3883.43;SAR=1787;SRF=4943;SRP=8.30198;SRR=4789;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:48,23:48:1686:23:812:-52.0278,0,-110.333	0/0:109:109,0:109:3846:0:0:0,-32.8123,-299.405	0/1:190:114,76:114:4065:76:2723:-188.047,0,-278.444	0/0:221:221,0:221:7838:0:0:0,-66.5276,-629.711	0/0:157:157,0:157:5507:0:0:0,-47.2617,-422.773	0/0:84:84,0:84:2960:0:0:0,-25.2865,-223.725	0/1:101:68,33:68:2378:33:1171:-75.1853,0,-155.214	0/0:232:230,2:230:8092:2:72:0,-63.0022,-651.891	0/1:98:72,26:72:2536:26:936:-55.0585,0,-157.514	0/0:166:166,0:166:5867:0:0:0,-49.971,-478.156	0/0:130:130,0:130:4598:0:0:0,-39.1339,-400.183	0/1:114:70,44:70:2447:44:1568:-107.094,0,-166.472	0/1:84:57,27:57:2012:27:960:-61.4298,0,-128.554	0/1:138:86,52:86:3055:52:1864:-126.497,0,-217.873	0/0:105:105,0:105:3712:0:0:0,-31.6081,-297.925	0/0:116:116,0:116:4109:0:0:0,-34.9195,-337.371	0/0:123:123,0:123:4355:0:0:0,-37.0267,-332.774	0/0:92:92,0:92:3252:0:0:0,-27.6948,-239.035	0/0:79:79,0:79:2761:0:0:0,-23.7814,-231.482	0/1:146:101,45:101:3600:45:1599:-100.249,0,-240.588	0/0:140:140,0:140:4958:0:0:0,-42.1442,-393.943	0/1:59:42,17:42:1489:17:612:-37.6527,0,-101.521	0/1:76:43,33:43:1528:33:1184:-83.99,0,-100.376	0/1:62:51,11:51:1808:11:396:-17.3189,0,-116.553	0/0:138:138,0:138:4854:0:0:0,-41.5421,-376.938	0/0:376:376,0:376:13314:0:0:0,-113.187,-1098.11	0/1:226:144,82:144:5098:82:2933:-196.171,0,-333.333	0/1:33:28,5:28:1004:5:180:-6.61808,0,-66.2287	0/1:240:161,79:161:5669:79:2822:-181.972,0,-394.687	0/1:134:78,56:78:2755:56:1984:-138.494,0,-194.77	0/0:127:127,0:127:4487:0:0:0,-38.2308,-369.841	0/1:8:7,1:7:252:1:36:-1.19004,0,-17.468	0/0:19:19,0:19:672:0:0:0,-5.71957,-57.9726	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/0:19:19,0:19:667:0:0:0,-5.71957,-59.4135	0/1:55:21,34:21:748:34:1224:-93.9086,0,-51.0886	0/0:324:324,0:324:11388:0:0:0,-97.5337,-928.838	0/0:110:110,0:110:3905:0:0:0,-33.1133,-309.504	0/0:80:80,0:80:2831:0:0:0,-24.0824,-229.408	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:209:160,49:160:5675:49:1734:-93.4262,0,-367.674	0/1:53:33,20:33:1149:20:708:-48.091,0,-77.4265	0/1:151:105,46:105:3714:46:1627:-101.262,0,-256.433	0/1:88:61,27:61:2137:27:949:-59.2321,0,-143.873	0/0:101:101,0:101:3548:0:0:0,-30.404,-287.679	0/0:144:144,0:144:5069:0:0:0,-43.3483,-418.004	0/0:200:200,0:200:7087:0:0:0,-60.206,-576.787	0/1:150:95,55:95:3370:55:1955:-131.07,0,-225.903	0/0:138:138,0:138:4904:0:0:0,-41.5421,-391.033	0/0:176:176,0:176:6230:0:0:0,-52.9813,-523.635	0/0:140:140,0:140:4982:0:0:0,-42.1442,-389.496	0/1:19:16,3:16:549:3:108:-4.3556,0,-42.122	0/0:180:180,0:180:6361:0:0:0,-54.1854,-521.722	0/0:80:80,0:80:2823:0:0:0,-24.0824,-243.331	0/1:13:8,5:8:288:5:180:-12.6377,0,-15.7138	0/1:162:111,51:111:3914:51:1820:-115.314,0,-256.605	0/0:46:46,0:46:1605:0:0:0,-13.8474,-129.914	0/1:26:13,13:13:464:13:464:-34.2707,0,-34.2707	0/1:34:19,15:19:680:15:540:-38.7015,0,-48.069	0/0:116:116,0:116:4097:0:0:0,-34.9195,-340.392	0/1:129:82,47:82:2880:47:1672:-111.934,0,-202.453	0/1:19:6,13:6:216:13:460:-36.0158,0,-14.0709	0/1:179:132,47:132:4666:47:1667:-96.4329,0,-327.306	0/1:153:88,65:88:3132:65:2311:-162.193,0,-211.553	0/1:69:29,40:29:1017:40:1408:-106.243,0,-63.9095	0/1:104:67,37:67:2363:37:1332:-88.8753,0,-163.385	0/0:163:163,0:163:5753:0:0:0,-49.0679,-465.828	0/1:164:56,108:56:1988:108:3843:-296.691,0,-122.555	0/1:80:37,43:37:1312:43:1536:-114.451,0,-92.2512	0/1:57:41,16:41:1436:16:576:-35.0154,0,-92.0014	0/1:110:75,34:75:2662:34:1195:-74.8283,0,-177.79	0/1:35:12,23:12:428:23:796:-61.4189,0,-26.5341	0/0:125:125,0:125:4374:0:0:0,-37.6287,-351.59	0/0:133:133,0:133:4696:0:0:0,-40.037,-376.262	0/0:215:215,0:215:7580:0:0:0,-64.7214,-627.662	0/0:249:248,1:248:8792:1:36:0,-71.3582,-705.973	0/1:255:145,110:145:5071:110:3926:-276.767,0,-342.242	0/0:159:159,0:159:5632:0:0:0,-47.8638,-446.21	0/1:26:13,13:13:456:13:468:-34.6329,0,-33.5465	0/0:269:269,0:269:9497:0:0:0,-80.9771,-710.789	0/1:129:84,45:84:2920:45:1581:-103.741,0,-192.624	0/0:266:265,1:265:9338:1:36:0,-76.4757,-745.939	0/0:136:136,0:136:4786:0:0:0,-40.9401,-374.096	0/1:92:54,38:54:1892:38:1364:-95.366,0,-131.97	0/0:108:108,0:108:3824:0:0:0,-32.5112,-293.302	0/1:120:82,38:82:2875:38:1368:-87.2972,0,-194.746	0/1:42:26,16:26:928:16:576:-39.5271,0,-56.7816	0/0:101:100,1:100:3530:1:36:0,-26.8058,-262.159	0/0:104:104,0:104:3663:0:0:0,-31.3071,-286.43	0/0:94:94,0:94:3285:0:0:0,-28.2968,-286.897	0/1:195:102,93:102:3554:93:3330:-240.829,0,-248.662	0/1:56:36,20:36:1275:20:716:-47.91,0,-87.4052	0/0:174:174,0:174:6093:0:0:0,-52.3792,-493.752	0/0:182:181,1:181:6349:1:36:0,-51.1892,-503.463
chr05	10660171	.	T	G	20983	PASS	AB=0.50885;ABP=4.70136;AC=46;AF=0.244681;AN=188;AO=1277;CIGAR=1X;DP=5409;DPB=5409;DPRA=1.01865;EPP=2758.64;EPPR=8949.5;GTI=1;LEN=1;MEANALT=1;MQM=59.9961;MQMR=59.9913;NS=94;NUMALT=1;ODDS=2.00531;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45133;QR=147219;RO=4132;RPL=2;RPP=2758.64;RPPR=8949.5;RPR=1275;RUN=1;SAF=0;SAP=2775.98;SAR=1277;SRF=0;SRP=8975.53;SRR=4132;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:19,11:19:680:11:377:-25.227,0,-52.4983	0/0:46:46,0:46:1625:0:0:0,-13.8474,-146.537	0/1:119:62,57:62:2224:57:1994:-143.908,0,-164.602	0/0:122:122,0:122:4328:0:0:0,-36.7257,-389.7	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:21:8,13:8:288:13:451:-34.5982,0,-19.9458	0/0:141:141,0:141:5035:0:0:0,-42.4452,-453.297	0/1:39:22,17:22:779:17:608:-43.3119,0,-58.6919	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:52:52,0:52:1843:0:0:0,-15.6536,-166.15	0/1:58:25,33:25:874:33:1180:-89.0483,0,-61.5155	0/1:55:26,29:26:932:29:1020:-75.5527,0,-67.6422	0/1:67:38,29:38:1348:29:994:-69.5974,0,-101.451	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.401	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:92:39,53:39:1387:53:1883:-142.053,0,-97.4334	0/0:86:86,0:86:3061:0:0:0,-25.8886,-275.718	0/1:64:10,54:10:360:54:1910:-152.91,0,-13.4784	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/1:39:30,9:30:1076:9:324:-17.7657,0,-85.4127	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:166:166,0:166:5918:0:0:0,-49.971,-532.731	0/1:104:50,54:50:1779:54:1926:-142.309,0,-129.085	0/1:28:13,15:13:456:15:532:-39.7842,0,-32.9444	0/1:139:76,63:76:2711:63:2231:-159.211,0,-202.39	0/1:91:52,39:52:1864:39:1384:-97.4651,0,-140.646	0/0:38:38,0:38:1338:0:0:0,-11.4391,-120.718	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:170:170,0:170:6075:0:0:0,-51.1751,-546.853	0/0:120:120,0:120:4274:0:0:0,-36.1236,-384.839	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:99:50,49:50:1771:49:1732:-126.36,0,-129.87	0/1:29:18,11:18:644:11:383:-26.0734,0,-49.5607	0/1:84:52,32:52:1839:32:1148:-78.3433,0,-140.503	0/1:50:28,22:28:1004:22:769:-54.4771,0,-75.6244	0/0:55:55,0:55:1947:0:0:0,-16.5566,-174.878	0/0:56:56,0:56:1985:0:0:0,-16.8577,-178.923	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/1:83:39,44:39:1396:44:1520:-112.098,0,-100.954	0/0:98:97,1:97:3464:1:36:0,-25.9027,-308.375	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/0:85:85,0:85:3007:0:0:0,-25.5875,-270.861	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:82:82,0:82:2904:0:0:0,-24.6845,-261.595	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:70:30,40:30:1072:40:1406:-105.764,0,-75.7204	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:87:45,42:45:1608:42:1504:-109.465,0,-118.82	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:110:44,66:44:1568:66:2336:-177.385,0,-108.298	0/1:105:50,55:50:1784:55:1949:-144.076,0,-129.235	0/1:46:22,24:22:756:24:829:-61.0761,0,-54.5076	0/1:42:13,29:13:451:29:1012:-78.7453,0,-28.2766	0/0:52:51,1:51:1816:1:36:0,-12.0553,-160.123	0/1:97:34,63:34:1203:63:2234:-172.123,0,-79.3751	0/1:30:18,12:18:640:12:428:-29.8279,0,-48.8984	0/1:39:22,17:22:779:17:603:-42.8593,0,-58.6919	0/1:47:28,19:28:1000:19:668:-46.2973,0,-76.167	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.89	0/0:94:93,1:93:3324:1:36:0,-24.6985,-295.78	0/0:66:65,1:65:2324:1:36:0,-16.2697,-205.822	0/0:99:98,1:98:3480:1:36:0,-26.2037,-309.816	0/1:51:17,34:17:608:34:1198:-92.771,0,-39.6995	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/1:73:36,37:36:1280:37:1311:-96.3157,0,-93.528	0/0:139:139,0:139:4951:0:0:0,-41.8432,-445.742	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:63:35,28:35:1252:28:1000:-71.3505,0,-94.0202	0/0:37:37,0:37:1308:0:0:0,-11.1381,-118.022	0/1:94:57,37:57:2032:37:1307:-89.6339,0,-154.856	0/1:17:11,6:11:396:6:212:-14.3073,0,-30.8652	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:111:56,55:56:2000:55:1954:-142.72,0,-146.859	0/1:46:18,28:18:644:28:988:-75.3865,0,-44.4432	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:87:87,0:87:3115:0:0:0,-26.1896,-280.576
chr05	10695849	.	GAAAT	GAAAC	74587.6	PASS	AB=0.392;ABP=306.947;AC=139;AF=0.747312;AN=186;AO=3834;CIGAR=4M1X;DP=5757;DPB=5757.8;DPRA=0;EPP=8328.44;EPPR=3850.86;GTI=3;LEN=1;MEANALT=2.06452;MQM=59.2113;MQMR=59.8866;NS=93;NUMALT=1;ODDS=0.158846;PAIRED=0;PAIREDR=0;PAO=1.33333;PQA=39.3333;PQR=0;PRO=0;QA=132254;QR=58787;RO=1772;RPL=0;RPP=8328.44;RPPR=3850.86;RPR=3834;RUN=1;SAF=0;SAP=8328.44;SAR=3834;SRF=0;SRP=3850.86;SRR=1772;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:28,19:28:907:19:672:-46.3425,0,-67.4806	1/1:53:2,51:2:71:51:1795:-155.065,-9.21253,0	0/1:116:54,59:54:1787:59:2032:-148.792,0,-126.835	1/1:108:1,107:1:28:107:3777:-337.302,-29.7119,0	1/1:49:0,48:0:0:48:1669:-150.07,-14.4494,0	1/1:37:0,36:0:0:36:1247:-112.289,-10.8371,0	0/1:88:54,34:54:1830:34:1204:-82.1417,0,-138.488	1/1:90:0,79:0:0:79:2753:-247.503,-23.7814,0	0/1:72:48,24:48:1632:24:848:-54.9319,0,-125.491	1/1:50:0,50:0:0:50:1768:-159.383,-15.0515,0	1/1:11:0,11:0:0:11:375:-34.0755,-3.31133,0	0/1:56:33,17:33:1051:17:548:-34.3024,0,-79.5788	0/1:55:32,19:32:981:19:619:-40.3951,0,-72.9763	0/1:26:22,3:22:717:3:95:-1.05781,0,-57.0405	1/1:14:0,14:0:0:14:475:-43.0735,-4.21442,0	1/1:18:0,16:0:0:16:503:-45.3201,-4.81648,0	1/1:7:0,6:0:0:6:199:-17.957,-1.80618,0	1/1:22:0,19:0:0:19:624:-56.2103,-5.71957,0	1/1:7:0,7:0:0:7:244:-22.2912,-2.10721,0	0/1:126:64,60:64:2180:60:2062:-148.183,0,-158.864	1/1:55:0,52:0:0:52:1733:-155.941,-15.6536,0	0/1:138:103,33:103:3375:33:1131:-60.887,0,-262.756	0/1:97:61,35:61:1987:35:1226:-80.3772,0,-149.682	0/1:75:39,35:39:1304:35:1216:-87.1973,0,-95.1126	1/1:54:0,53:0:0:53:1845:-166.043,-15.9546,0	1/1:197:1,189:1:27:189:6562:-587.689,-54.7644,0	0/1:141:71,69:71:2398:69:2411:-174.683,0,-173.535	0/1:24:15,9:15:484:9:297:-19.8171,0,-36.6452	0/1:205:117,84:117:3899:84:2923:-202.344,0,-290.38	0/1:91:49,41:49:1631:41:1452:-103.656,0,-119.758	1/1:88:0,88:0:0:88:3053:-274.743,-26.4906,0	0/1:7:1,6:1:34:6:208:-16.9472,0,-1.2917	1/1:12:0,12:0:0:12:416:-37.7716,-3.61236,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:15:7,8:7:236:8:276:-20.6482,0,-17.0538	1/1:112:0,99:0:0:99:3272:-294.43,-29.802,0	1/1:106:0,96:0:0:96:3333:-299.891,-28.8989,0	1/1:17:0,16:0:0:16:516:-46.4723,-4.81648,0	0/1:4:2,2:2:56:2:72:-5.62776,0,-4.11453	0/1:113:59,53:59:1970:53:1837:-131.536,0,-143.529	0/1:18:15,3:15:458:3:104:-4.28427,0,-36.0975	0/1:112:64,47:64:2135:47:1643:-114.405,0,-158.702	0/1:20:17,3:17:564:3:91:-2.47125,0,-45.0548	1/1:10:0,10:0:0:10:339:-30.8329,-3.0103,0	1/1:148:0,144:0:0:144:5013:-450.98,-43.3483,0	1/1:72:0,66:0:0:66:2267:-203.663,-19.868,0	0/1:158:101,55:101:3426:55:1929:-126.608,0,-261.343	1/1:72:0,71:0:0:71:2489:-223.762,-21.3731,0	1/1:51:0,50:0:0:50:1763:-158.579,-15.0515,0	1/1:118:0,115:0:0:115:3963:-356.556,-34.6185,0	0/1:11:9,2:9:314:2:68:-3.14638,0,-25.2858	1/1:92:0,90:0:0:90:3077:-276.653,-27.0927,0	1/1:41:0,41:0:0:41:1430:-128.991,-12.3422,0	0/1:17:13,4:13:438:4:140:-7.8187,0,-34.6244	0/1:113:51,60:51:1698:60:2070:-152.827,0,-119.379	1/1:39:0,39:0:0:39:1352:-121.971,-11.7402,0	0/1:7:3,3:3:99:3:108:-7.99881,0,-7.1683	0/1:15:5,8:5:162:8:280:-21.3724,0,-10.7296	1/1:60:0,60:0:0:60:2077:-187.178,-18.0618,0	0/1:60:40,20:40:1315:20:662:-41.8222,0,-100.581	0/1:6:3,3:3:98:3:104:-7.88465,0,-7.33767	0/1:119:68,45:68:2240:45:1551:-105.514,0,-167.562	0/1:92:53,39:53:1791:39:1360:-94.9952,0,-133.747	0/1:53:30,21:30:980:21:701:-47.7625,0,-72.8758	0/1:93:63,29:63:2106:29:1017:-63.8662,0,-161.86	1/1:115:1,113:1:31:113:3907:-348.651,-31.5288,0	0/1:128:94,34:94:3204:34:1180:-67.9726,0,-250.057	0/1:15:8,7:8:253:7:207:-14.4064,0,-18.5654	0/1:49:28,19:28:941:19:648:-44.1971,0,-70.5682	0/1:49:34,14:34:1024:14:471:-28.0433,0,-77.7808	0/1:16:8,8:8:269:8:284:-21.0869,0,-19.7212	1/1:105:0,95:0:0:95:3232:-290.281,-28.5979,0	1/1:39:0,38:0:0:38:1296:-116.53,-11.4391,0	1/1:101:0,99:0:0:99:3483:-313.245,-29.802,0	1/1:100:0,98:0:0:98:3451:-310.429,-29.5009,0	0/1:94:45,47:45:1531:47:1637:-119.63,0,-110.118	1/1:59:0,59:0:0:59:2025:-182.453,-17.7608,0	0/1:10:3,7:3:105:7:244:-19.2891,0,-6.78586	1/1:73:0,72:0:0:72:2498:-224.726,-21.6742,0	0/1:70:33,32:33:1107:32:1074:-77.0791,0,-80.0622	1/1:125:0,125:0:0:125:4373:-393.579,-37.6288,0	1/1:24:0,24:0:0:24:840:-75.9089,-7.22472,0	0/1:32:19,12:19:623:12:353:-22.5173,0,-46.8292	1/1:12:0,12:0:0:12:405:-36.7721,-3.61236,0	0/1:57:34,22:34:1112:22:742:-49.9564,0,-83.2471	0/1:11:8,3:8:267:3:91:-5.18052,0,-21.0443	1/1:47:0,45:0:0:45:1453:-129.853,-13.5464,0	1/1:38:0,34:0:0:34:1115:-100.34,-10.235,0	1/1:12:0,12:0:0:12:384:-34.8689,-3.61236,0	0/1:57:42,15:42:1367:15:507:-28.6625,0,-106.16	0/1:21:17,4:17:544:4:131:-5.79184,0,-42.9451	1/1:70:0,70:0:0:70:2436:-219.348,-21.0721,0	1/1:23:0,23:0:0:23:772:-69.7446,-6.92369,0
chr05	10695866	.	C	T	15358	PASS	AB=0.45441;ABP=51.3215;AC=45;AF=0.241935;AN=186;AO=1222;CIGAR=1X;DP=6113;DPB=6113;DPRA=0.956509;EPP=2656.55;EPPR=10610.7;GTI=3;LEN=1;MEANALT=1.06122;MQM=59.7324;MQMR=58.4551;NS=93;NUMALT=1;ODDS=3.53244;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39099;QR=174861;RO=4885;RPL=0;RPP=2656.55;RPPR=10610.7;RPR=1222;RUN=1;SAF=0;SAP=2656.55;SAR=1222;SRF=0;SRP=10610.7;SRR=4885;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:26,15:26:932:15:493:-32.3399,0,-71.734	0/0:64:62,2:62:2224:2:65:0,-13.0924,-194.113	0/1:111:72,39:72:2580:39:1257:-79.9928,0,-198.027	0/0:135:135,0:135:4831:0:0:0,-40.639,-434.721	0/0:55:54,0:54:1936:0:0:0,-16.2556,-173.894	0/0:45:45,0:45:1612:0:0:0,-13.5463,-144.342	0/1:75:37,38:37:1332:38:1227:-88.1355,0,-97.5662	0/0:109:108,0:108:3859:0:0:0,-32.5112,-342.497	0/1:70:29,40:29:1025:40:1287:-95.1264,0,-71.3459	0/0:63:62,1:62:2228:1:32:0,-15.7666,-197.546	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5413	0/1:57:39,18:39:1382:18:571:-34.5325,0,-107.096	0/1:46:26,20:26:932:20:618:-42.0264,0,-68.6393	0/1:26:9,17:9:324:17:486:-36.1887,0,-21.535	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.553	0/0:27:27,0:27:964:0:0:0,-8.12781,-86.8959	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.484	0/0:24:24,0:24:852:0:0:0,-7.22472,-76.6593	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3614	0/1:120:71,49:71:2552:49:1618:-109.772,0,-193.61	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.119	0/1:116:49,67:49:1723:67:2145:-158.352,0,-119.638	0/1:87:43,44:43:1535:44:1387:-98.5407,0,-110.415	0/1:70:41,29:41:1468:29:979:-67.3349,0,-111.205	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.704	0/0:227:225,2:225:8068:2:64:0,-62.2613,-718.536	0/1:122:78,44:78:2791:44:1465:-95.2771,0,-214.54	0/1:19:9,10:9:324:10:329:-24.2025,0,-23.7783	0/1:186:101,85:101:3616:85:2737:-190.569,0,-267.939	0/1:83:46,37:46:1648:37:1105:-74.7321,0,-123.482	0/0:107:107,0:107:3823:0:0:0,-32.2102,-343.768	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7858	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.7683	.:.:.:.:.:.:.:.	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:14:8,6:8:288:6:208:-14.8447,0,-22.0365	0/0:151:151,0:151:5378:0:0:0,-45.4555,-483.508	0/0:123:122,1:122:4372:1:36:0,-33.4335,-386.865	0/0:28:28,0:28:987:0:0:0,-8.42884,-88.9357	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83188	0/1:104:59,45:59:2120:45:1467:-100.994,0,-159.711	0/1:10:5,5:5:180:5:155:-11.2461,0,-13.5334	0/1:93:55,38:55:1976:38:1197:-80.0074,0,-149.895	0/1:19:8,11:8:284:11:334:-24.6344,0,-20.1763	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.3747	0/0:173:172,0:172:6142:0:0:0,-51.7772,-550.933	0/0:94:94,0:94:3344:0:0:0,-28.2968,-296.8	0/1:140:61,78:61:2188:78:2555:-188.143,0,-155.096	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.625	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.412	0/0:135:135,0:135:4835:0:0:0,-40.639,-434.77	0/1:9:2,7:2:72:7:233:-18.585,0,-4.12745	0/0:113:113,0:113:4046:0:0:0,-34.0164,-362.932	0/0:47:47,0:47:1676:0:0:0,-14.1484,-150.169	0/1:15:4,11:4:144:11:369:-29.0171,0,-8.7898	0/1:99:68,31:68:2448:31:1008:-61.2057,0,-190.738	0/0:50:50,0:50:1800:0:0:0,-15.0515,-161.64	0/1:6:4,2:4:144:2:57:-3.60713,0,-10.4609	0/1:16:11,5:11:396:5:145:-8.51718,0,-30.9789	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.019	0/1:60:42,18:42:1508:18:546:-31.3653,0,-117.876	0/1:7:4,3:4:144:3:74:-4.79871,0,-11.1769	0/1:96:53,42:53:1904:42:1330:-91.1667,0,-142.699	0/1:90:48,42:48:1720:42:1316:-91.5926,0,-127.973	0/1:47:23,24:23:828:24:754:-53.9863,0,-60.6703	0/1:84:35,49:35:1251:49:1653:-123.761,0,-87.5122	0/0:143:143,0:143:5135:0:0:0,-43.0473,-461.988	0/1:114:43,71:43:1536:71:2165:-160.77,0,-104.211	0/1:18:12,6:12:432:6:186:-11.625,0,-33.8027	0/1:45:25,20:25:885:20:654:-45.5975,0,-65.7683	0/1:31:18,13:18:640:13:376:-24.7882,0,-48.5928	0/1:15:9,6:9:324:6:200:-13.8108,0,-24.987	0/0:134:134,0:134:4808:0:0:0,-40.338,-427.903	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.487	0/0:108:108,0:108:3866:0:0:0,-32.5112,-347.785	0/0:120:120,0:120:4297:0:0:0,-36.1236,-386.567	0/1:90:56,34:56:2012:34:1106:-72.7342,0,-153.672	0/0:74:74,0:74:2655:0:0:0,-22.2762,-238.908	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:86:86,0:86:3087:0:0:0,-25.8886,-277.816	0/1:58:35,23:35:1248:23:760:-51.2238,0,-95.1029	0/0:145:145,0:145:5196:0:0:0,-43.6493,-467.575	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.209	0/1:34:21,13:21:752:13:452:-30.7761,0,-57.6966	0/0:18:18,0:18:648:0:0:0,-5.41854,-57.9603	0/1:53:33,20:33:1184:20:623:-40.4097,0,-90.8311	0/1:9:4,5:4:140:5:146:-10.7188,0,-10.2349	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.09	0/0:53:53,0:53:1900:0:0:0,-15.9546,-169.475	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.6913	0/1:46:19,27:19:675:27:873:-65.021,0,-47.0911	0/1:17:9,8:9:320:8:220:-14.9529,0,-24.0207	0/0:94:94,0:94:3367:0:0:0,-28.2968,-303.124	0/0:41:41,0:41:1451:0:0:0,-12.3422,-130.819
chr05	10695890	.	GGC	AGT,AGC	133448	PASS	AB=0.449619,0.546119;ABP=75.433,63.6985;AC=139,47;AF=0.747312,0.252688;AN=186;AO=4919,1800;CIGAR=1X1M1X,1X2M;DP=6748;DPB=6748;DPRA=0,1.08036;EPP=10684.5,3911.66;EPPR=7.35324;GTI=0;LEN=3,1;MEANALT=1.84946,2.34615;MQM=58.4828,59.8133;MQMR=60;NS=93;NUMALT=2;ODDS=2.00101;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=163709,63924;QR=72;RO=2;RPL=4919,1800;RPP=10684.5,3911.66;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10684.5,3911.66;SAR=4919,1800;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:52:0,25,27:0:0:25,27:836,941:-144.522,-76.8629,-69.3372,-68.0001,0,-59.8723	1/1:67:0,64,2:0:0:64,2:2113,72:-190.032,-19.2659,0,-184.156,-13.3905,-183.554	1/2:129:0,72,57:0:0:72,57:2388,2032:-358.934,-165.992,-144.318,-193.287,0,-176.128	1/1:141:0,141,0:0:0:141,0:4731,0:-425.909,-42.4452,0,-425.909,-42.4452,-425.909	1/1:57:0,57,0:0:0:57,0:1973,0:-177.6,-17.1587,0,-177.6,-17.1587,-177.6	1/1:44:0,44,0:0:0:44,0:1475,0:-132.22,-13.2453,0,-132.22,-13.2453,-132.22	1/2:93:0,38,55:0:0:38,55:1298,1964:-265.74,-160.479,-149.039,-105.609,0,-89.0524	1/1:110:0,109,1:0:0:109,1:3602,36:-323.361,-32.8123,0,-320.423,-29.515,-320.122	1/2:81:0,29,52:0:0:29,52:987,1868:-232.608,-152.69,-143.96,-80.2644,0,-64.6109	1/1:63:0,63,0:0:0:63,0:2125,0:-191.501,-18.9649,0,-191.501,-18.9649,-191.501	1/1:22:0,22,0:0:0:22,0:717,0:-64.792,-6.62266,0,-64.792,-6.62266,-64.792	1/2:75:0,40,35:0:0:40,35:1212,1240:-198.125,-101.365,-89.3239,-97.0893,0,-86.5533	1/2:59:1,25,33:1:36:25,33:769,1176:-153.867,-92.8807,-88.2925,-58.3176,0,-51.3231	1/2:30:0,8,21:0:0:8,21:273,752:-83.6068,-61.4684,-59.0602,-22.258,0,-15.9363	1/1:35:0,35,0:0:0:35,0:1185,0:-106.873,-10.5361,0,-106.873,-10.5361,-106.873	1/1:27:0,27,0:0:0:27,0:833,0:-75.2406,-8.12781,0,-75.2406,-8.12781,-75.2406	1/1:10:0,10,0:0:0:10,0:296,0:-26.9102,-3.0103,0,-26.9102,-3.0103,-26.9102	1/1:24:0,24,0:0:0:24,0:744,0:-67.2247,-7.22472,0,-67.2247,-7.22472,-67.2247	1/1:10:0,9,0:0:0:9,0:270,0:-24.3927,-2.70927,0,-24.3927,-2.70927,-24.3927	1/2:141:0,74,67:0:0:74,67:2503,2368:-396.021,-193.208,-170.931,-203.16,0,-182.991	1/1:73:0,73,0:0:0:73,0:2421,0:-217.311,-21.9752,0,-217.311,-21.9752,-217.311	1/2:150:0,48,100:0:0:48,100:1578,3546:-416.3,-288.857,-274.408,-127.424,0,-97.3208	1/2:104:0,41,60:0:0:41,60:1338,2129:-280.936,-173.5,-161.158,-107.458,0,-89.3962	1/2:78:0,41,36:0:0:41,36:1382,1280:-216.386,-104.413,-92.0711,-112.066,0,-101.229	1/1:63:0,62,1:0:0:62,1:2097,36:-188.565,-18.6639,0,-185.628,-15.3666,-185.327	1/1:231:0,226,1:0:0:226,1:7406,32:-666.115,-68.0328,0,-663.536,-65.4514,-663.235	1/2:151:0,80,71:0:0:80,71:2727,2528:-427.484,-206.268,-182.185,-221.565,0,-200.191	1/2:28:0,12,16:0:0:12,16:365,567:-75.7448,-46.5442,-42.9319,-29.5261,0,-24.7096	1/2:219:0,102,117:0:0:102,117:3361,4152:-609.931,-338.586,-307.88,-271.687,0,-236.466	1/2:95:0,48,47:0:0:48,47:1629,1676:-269.051,-136.979,-122.529,-132.421,0,-118.272	1/1:108:0,108,0:0:0:108,0:3654,0:-328.989,-32.5112,0,-328.989,-32.5112,-328.989	1/2:7:0,6,1:0:0:6,1:216,36:-20.9171,-3.29724,-1.49106,-17.9797,0,-17.6786	1/1:18:0,18,0:0:0:18,0:612,0:-55.3863,-5.41854,0,-55.3863,-5.41854,-55.3863	.:.:.:.:.:.:.:.	1/1:3:0,3,0:0:0:3,0:99,0:-9.23658,-0.90309,0,-9.23658,-0.90309,-9.23658	1/2:15:0,8,7:0:0:8,7:280,248:-43.3258,-20.557,-18.1487,-23.1209,0,-21.0137	1/1:154:0,153,0:0:0:153,0:4991,0:-448.608,-46.0576,0,-448.608,-46.0576,-448.608	1/1:126:0,125,0:0:0:125,0:3968,0:-356.17,-37.6288,0,-356.17,-37.6288,-356.17	1/1:27:0,26,0:0:0:26,0:805,0:-72.4699,-7.82678,0,-72.4699,-7.82678,-72.4699	1/2:4:0,2,2:0:0:2,2:64,68:-10.9971,-5.85565,-5.25359,-5.47119,0,-4.86913	1/2:123:0,60,63:0:0:60,63:1976,2246:-343.094,-183.426,-165.364,-160.011,0,-141.046	1/2:21:0,5,16:0:0:5,16:162,551:-58.1621,-45.098,-43.5929,-13.3928,0,-8.57636	1/2:119:0,56,63:0:0:56,63:1874,2252:-335.63,-183.978,-167.121,-151.996,0,-133.031	1/2:26:0,8,18:0:0:8,18:264,625:-72.4862,-51.1515,-48.7433,-21.6698,0,-16.2512	1/1:19:0,19,0:0:0:19,0:621,0:-56.1258,-5.71957,0,-56.1258,-5.71957,-56.1258	1/1:177:0,177,0:0:0:177,0:5780,0:-519.955,-53.2823,0,-519.955,-53.2823,-519.955	1/1:92:0,92,0:0:0:92,0:2927,0:-262.865,-27.6948,0,-262.865,-27.6948,-262.865	1/2:164:0,62,101:0:0:62,101:2061,3614:-461.575,-294.85,-276.186,-166.854,0,-136.45	1/1:82:0,82,0:0:0:82,0:2837,0:-255.266,-24.6845,0,-255.266,-24.6845,-255.266	1/1:61:0,61,0:0:0:61,0:2085,0:-187.878,-18.3628,0,-187.878,-18.3628,-187.878	1/1:136:0,136,0:0:0:136,0:4601,0:-413.81,-40.9401,0,-413.81,-40.9401,-413.81	1/2:13:0,2,11:0:0:2,11:70,396:-38.3653,-32.6714,-32.0694,-6.04527,0,-2.73394	1/1:113:0,112,0:0:0:112,0:3796,0:-340.816,-33.7154,0,-340.816,-33.7154,-340.816	1/1:46:0,46,0:0:0:46,0:1540,0:-138.86,-13.8474,0,-138.86,-13.8474,-138.86	1/2:17:0,3,13:0:0:3,13:106,455:-45.7191,-37.0929,-36.1898,-8.68686,0,-4.77347	1/2:114:0,68,46:0:0:68,46:2314,1590:-317.221,-129.538,-109.068,-188.026,0,-174.178	1/1:51:0,51,0:0:0:51,0:1725,0:-154.894,-15.3525,0,-154.894,-15.3525,-154.894	1/2:7:0,4,3:0:0:4,3:131,108:-19.3007,-9.17208,-7.96796,-10.4694,0,-9.56632	1/2:17:0,11,6:0:0:11,6:368,212:-47.3617,-17.6186,-14.3073,-30.0895,0,-28.2833	1/1:71:0,71,0:0:0:71,0:2373,0:-213.796,-21.3731,0,-213.796,-21.3731,-213.796	1/2:87:0,42,45:0:0:42,45:1394,1564:-240.224,-127.501,-114.858,-113.062,0,-99.5157	1/2:8:0,4,4:0:0:4,4:127,144:-22.2813,-12.1095,-10.9054,-10.51,0,-9.3059	1/2:118:0,54,64:0:0:54,64:1800,2253:-329.368,-183.72,-167.464,-145.99,0,-126.724	1/2:105:0,49,56:0:0:49,56:1701,2004:-301.949,-163.691,-148.941,-138.61,0,-121.752	1/2:56:0,24,32:0:0:24,32:782,1128:-155.143,-92.0343,-84.8096,-63.4456,0,-53.8126	1/2:103:0,35,68:0:0:35,68:1204,2436:-296.778,-199.025,-188.489,-98.1014,0,-77.6314	1/1:145:0,143,1:0:0:143,1:4826,36:-433.919,-43.0473,0,-430.982,-40.1097,-430.681	1/2:138:1,43,94:1:36:43,94:1452,3364:-388.752,-271.374,-261.368,-114.725,0,-89.3662	1/2:19:0,11,8:0:0:11,8:352,284:-51.8331,-23.4951,-20.1838,-28.6781,0,-26.2699	1/2:52:0,24,28:0:0:24,28:791,1008:-146.517,-82.5993,-75.3746,-64.2612,0,-55.8324	1/2:46:0,18,28:0:0:18,28:571,988:-126.746,-80.8051,-75.3865,-46.2716,0,-37.8428	1/2:18:0,9,9:0:0:9,9:302,324:-51.2449,-26.7966,-24.0873,-24.796,0,-22.0867	1/1:133:0,133,0:0:0:133,0:4511,0:-404.745,-40.037,0,-404.745,-40.037,-404.745	1/1:52:0,52,0:0:0:52,0:1736,0:-156.364,-15.6536,0,-156.364,-15.6536,-156.364	1/1:108:0,108,0:0:0:108,0:3709,0:-333.905,-32.5112,0,-333.905,-32.5112,-333.905	1/1:120:0,120,0:0:0:120,0:4094,0:-368.395,-36.1236,0,-368.395,-36.1236,-368.395	1/2:103:0,55,48:0:0:55,48:1865,1697:-289.608,-138.56,-122.003,-151.394,0,-136.945	1/1:76:0,76,0:0:0:76,0:2501,0:-225.221,-22.8783,0,-225.221,-22.8783,-225.221	1/2:12:0,7,3:0:0:7,3:230,108:-27.4134,-8.83629,-6.72908,-18.5929,0,-17.6898	1/1:85:0,83,0:0:0:83,0:2783,0:-250.344,-24.9855,0,-250.344,-24.9855,-250.344	1/2:77:0,38,38:0:0:38,38:1228,1334:-207.452,-108.444,-97.005,-99.1387,0,-87.6996	1/1:149:0,148,0:0:0:148,0:5035,0:-452.713,-44.5524,0,-452.713,-44.5524,-452.713	1/1:36:0,36,0:0:0:36,0:1231,0:-111.075,-10.8371,0,-111.075,-10.8371,-111.075	1/2:43:0,21,22:0:0:21,22:694,776:-119.597,-63.5321,-57.2105,-56.4064,0,-49.7838	1/1:18:0,18,0:0:0:18,0:589,0:-53.1492,-5.41854,0,-53.1492,-5.41854,-53.1492	1/2:69:0,33,36:0:0:33,36:1116,1292:-196.15,-105.744,-95.8103,-90.7536,0,-79.9165	1/2:13:0,4,9:0:0:4,9:139,324:-38.0934,-26.7966,-25.5925,-11.648,0,-8.9387	1/1:74:0,74,0:0:0:74,0:2362,0:-211.931,-22.2762,0,-211.931,-22.2762,-211.931	1/1:51:0,51,0:0:0:51,0:1630,0:-146.925,-15.3525,0,-146.925,-15.3525,-146.925	1/1:19:0,19,0:0:0:19,0:607,0:-54.8681,-5.71957,0,-54.8681,-5.71957,-54.8681	1/2:56:0,19,37:0:0:19,37:606,1320:-156.623,-107.964,-102.244,-48.9906,0,-37.8525	1/2:30:0,9,21:0:0:9,21:309,744:-86.0472,-60.9627,-58.2534,-25.431,0,-19.1093	1/1:94:0,93,0:0:0:93,0:3121,0:-280.88,-27.9958,0,-280.88,-27.9958,-280.88	1/1:42:0,42,0:0:0:42,0:1377,0:-124.165,-12.6433,0,-124.165,-12.6433,-124.165
chr05	10767096	.	TG	CG	357133	PASS	AB=0.497664;ABP=3.38569;AC=139;AF=0.739362;AN=188;AO=13317;CIGAR=1X1M;DP=17338;DPB=17343.5;DPRA=62.1326;EPP=28842.4;EPPR=8632.52;GTI=2;LEN=1;MEANALT=1.2043;MQM=59.968;MQMR=59.9597;NS=94;NUMALT=1;ODDS=0.155345;PAIRED=0;PAIREDR=0;PAO=3.5;PQA=54;PQR=0;PRO=2;QA=470770;QR=140814;RO=3998;RPL=7664;RPP=662.445;RPPR=27.8839;RPR=5653;RUN=1;SAF=7673;SAP=674.303;SAR=5644;SRF=2112;SRP=30.7517;SRR=1886;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:27,25:27:957:25:896:-64.9471,0,-70.4316	1/1:230:0,230:0:0:230:8181:-736.31,-69.2369,0	0/1:118:65,53:65:2305:53:1880:-133.949,0,-172.188	1/1:474:1,473:1:36:473:16752:-1503.76,-139.09,0	1/1:138:0,138:0:0:138:4893:-440.527,-41.5421,0	1/1:84:0,84:0:0:84:3004:-270.592,-25.2865,0	0/1:347:170,175:170:5977:175:6114:-446.17,0,-433.747	1/1:164:0,163:0:0:163:5755:-517.707,-49.0679,0	0/1:103:49,54:49:1700:54:1923:-142.34,0,-122.274	1/1:213:0,213:0:0:213:7512:-675.861,-64.1194,0	1/1:139:0,139:0:0:139:4921:-443.042,-41.8432,0	0/1:65:31,34:31:1109:34:1206:-89.2775,0,-80.5541	0/1:97:42,55:42:1481:55:1931:-144.862,0,-104.381	0/1:143:63,80:63:2208:80:2840:-212.79,0,-155.935	1/1:156:0,156:0:0:156:5533:-498.097,-46.9607,0	1/1:121:0,121:0:0:121:4291:-386.368,-36.4246,0	1/1:73:0,73:0:0:73:2608:-234.96,-21.9752,0	1/1:86:0,86:0:0:86:3021:-272.121,-25.8886,0	1/1:71:0,71:0:0:71:2531:-227.681,-21.3731,0	0/1:463:225,238:225:7908:238:8443:-620.504,0,-572.378	1/1:276:3,272:3:106:272:9641:-857.802,-73.1324,0	0/1:173:123,49:123:4324:49:1735:-104.289,0,-337.203	0/1:67:25,42:25:881:42:1487:-113.955,0,-59.4372	0/1:181:83,98:83:2929:98:3453:-256.499,0,-209.356	1/1:139:0,138:0:0:138:4882:-439.171,-41.5421,0	1/1:581:3,578:3:108:578:20446:-1829.57,-164.863,0	0/1:472:229,243:229:8053:243:8596:-631.563,0,-582.713	0/1:82:42,40:42:1496:40:1428:-104.133,0,-110.249	0/1:638:317,320:317:11162:320:11382:-832.146,0,-812.37	0/1:221:98,123:98:3448:123:4368:-326.769,0,-244.007	1/1:236:1,235:1:36:235:8300:-743.421,-67.4448,0	0/1:21:16,5:16:555:5:176:-9.86339,0,-43.9541	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891	1/1:9:0,9:0:0:9:319:-29.0514,-2.70927,0	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:441:0,441:0:0:441:15604:-1404.02,-132.754,0	1/1:361:1,359:1:36:359:12730:-1141.94,-105.132,0	1/1:76:0,76:0:0:76:2696:-242.883,-22.8783,0	0/1:6:4,2:4:142:2:68:-4.65153,0,-11.323	0/1:357:163,194:163:5766:194:6872:-511.088,0,-411.592	0/1:91:54,37:54:1925:37:1306:-90.4462,0,-146.131	0/1:257:121,136:121:4226:136:4832:-357.674,0,-303.158	0/1:165:88,77:88:3124:77:2714:-194.835,0,-231.718	1/1:170:0,170:0:0:170:5977:-538.041,-51.1751,0	1/1:248:3,245:3:108:245:8602:-764.098,-64.5803,0	1/1:171:0,171:0:0:171:6108:-549.461,-51.4761,0	0/1:371:180,191:180:6298:191:6717:-492.931,0,-455.24	1/1:211:0,211:0:0:211:7433:-669.027,-63.5173,0	1/1:355:2,353:2:61:353:12471:-1116.44,-101.072,0	1/1:463:0,462:0:0:462:16434:-1478.36,-139.076,0	0/1:22:8,14:8:284:14:488:-37.6278,0,-19.2809	1/1:172:0,172:0:0:172:6121:-550.993,-51.7772,0	1/1:86:0,86:0:0:86:3058:-275.449,-25.8886,0	0/1:13:6,7:6:205:7:248:-18.7508,0,-14.8702	0/1:289:131,158:131:4595:158:5603:-417.396,0,-326.724	1/1:88:6,82:6:214:82:2865:-238.479,-6.88288,0	0/1:11:6,5:6:216:5:171:-12.4141,0,-16.4792	0/1:31:17,14:17:597:14:487:-34.8273,0,-44.7247	1/1:146:0,146:0:0:146:5179:-466.25,-43.9504,0	0/1:243:125,118:125:4418:118:4150:-300.536,0,-324.645	0/1:17:7,10:7:239:10:328:-24.7158,0,-16.7249	0/1:313:159,154:159:5609:154:5429:-394.523,0,-410.715	0/1:408:191,215:191:6719:215:7607:-562.045,0,-482.225	0/1:145:72,73:72:2542:73:2600:-190.6,0,-185.382	0/1:204:95,108:95:3341:108:3821:-282.73,0,-239.49	1/1:328:3,325:3:106:325:11437:-1019.32,-88.8487,0	0/1:191:115,76:115:4035:76:2698:-185.567,0,-305.843	0/1:78:43,35:43:1513:35:1228:-87.3435,0,-112.981	0/1:116:50,65:50:1774:65:2319:-174.011,0,-124.983	0/1:227:111,116:111:3932:116:4096:-300.492,0,-285.581	0/1:48:17,31:17:603:31:1083:-83.3286,0,-40.1509	1/1:74:0,73:0:0:73:2590:-232.989,-21.9752,0	1/1:91:0,90:0:0:90:3193:-287.174,-27.0927,0	1/1:485:1,483:1:36:483:17074:-1532.66,-142.405,0	1/1:300:0,298:0:0:298:10572:-951.043,-89.7069,0	0/1:149:77,72:77:2744:72:2527:-182.825,0,-202.349	1/1:129:2,127:2:72:127:4474:-395.85,-31.9961,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:247:1,246:1:36:246:8733:-782.371,-70.7561,0	0/1:119:67,52:67:2389:52:1864:-131.857,0,-179.085	1/1:479:0,478:0:0:478:16885:-1518.96,-143.892,0	1/1:225:0,225:0:0:225:7969:-717.241,-67.7318,0	0/1:123:51,72:51:1782:72:2544:-192.183,0,-123.527	1/1:189:1,187:1:36:187:6474:-579.158,-53.3552,0	0/1:328:195,133:195:6836:133:4674:-322.089,0,-516.091	0/1:34:15,19:15:529:19:680:-51.2941,0,-37.7056	1/1:86:0,86:0:0:86:3012:-271.308,-25.8886,0	1/1:82:0,82:0:0:82:2903:-261.498,-24.6845,0	1/1:89:0,89:0:0:89:3126:-281.57,-26.7917,0	0/1:159:84,75:84:2954:75:2650:-190.881,0,-218.229	0/1:150:107,43:107:3779:43:1510:-91.0371,0,-295.155	1/1:181:0,181:0:0:181:6296:-566.643,-54.4864,0	1/1:222:0,222:0:0:222:7716:-694.488,-66.8287,0
chr05	10767134	.	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chr05	11586008	.	A	C	15979.5	PASS	AB=0.372299;ABP=435.598;AC=56;AF=0.297872;AN=188;AO=1138;CIGAR=1X;DP=6192;DPB=6192;DPRA=0.662682;EPP=2474.15;EPPR=10973.3;GTI=7;LEN=1;MEANALT=1;MQM=58.9429;MQMR=59.9784;NS=94;NUMALT=1;ODDS=0.188306;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40774;QR=181222;RO=5052;RPL=1138;RPP=2474.15;RPPR=10973.3;RPR=0;RUN=1;SAF=0;SAP=2474.15;SAR=1138;SRF=0;SRP=10973.3;SRR=5052;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:6,4:6:216:4:140:-9.93288,0,-16.7802	0/0:148:148,0:148:5299:0:0:0,-44.5524,-477.044	0/0:123:123,0:123:4411:0:0:0,-37.0267,-397.16	0/0:195:194,0:194:6956:0:0:0,-58.3998,-625.743	0/1:40:19,21:19:671:21:756:-56.3176,0,-48.6696	0/1:25:15,10:15:532:10:356:-24.8474,0,-40.6873	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.645	0/1:73:49,24:49:1752:24:855:-55.2815,0,-135.989	0/1:65:40,25:40:1417:25:883:-60.2113,0,-108.258	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.217	0/1:25:16,9:16:572:9:320:-21.609,0,-44.2877	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:32:22,10:22:792:10:360:-23.1073,0,-61.9727	0/1:27:17,10:17:608:10:356:-24.2496,0,-46.9242	0/1:34:23,11:23:824:11:396:-25.7433,0,-64.2473	0/1:25:14,11:14:500:11:381:-27.0908,0,-37.8104	0/1:30:19,11:19:684:11:392:-26.5849,0,-52.8594	0/1:22:16,6:16:572:6:207:-12.3421,0,-45.1908	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5744	0/1:120:85,35:85:3037:35:1260:-77.5636,0,-237.435	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.077	0/1:32:19,13:19:680:13:468:-32.8172,0,-51.8958	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.556	0/1:118:85,33:85:3056:33:1172:-70.2536,0,-239.746	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:193:138,55:138:4952:55:1976:-119.994,0,-387.727	0/1:141:94,47:94:3367:47:1680:-109.024,0,-260.8	0/1:16:5,11:5:180:11:388:-30.4369,0,-11.7356	0/1:151:94,57:94:3376:57:2040:-138.394,0,-258.599	0/1:134:102,32:102:3664:32:1148:-63.2792,0,-289.618	0/1:102:68,34:68:2448:34:1220:-79.3883,0,-189.869	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:3:2,1:2:72:1:36:-2.69474,0,-5.93363	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:11:4,7:4:144:7:252:-19.7148,0,-10.0023	0/1:5:4,1:4:144:1:36:-2.09268,0,-11.8085	0/1:107:59,48:59:2124:48:1720:-122.856,0,-159.217	0/0:137:137,0:137:4885:0:0:0,-41.2411,-439.801	0/1:17:10,7:10:360:7:252:-17.9086,0,-27.6268	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:167:167,0:167:6000:0:0:0,-50.272,-540.102	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6049	0/1:88:48,40:48:1728:40:1440:-103.391,0,-129.314	0/1:18:9,9:9:320:9:324:-24.0837,0,-23.7238	0/1:25:18,7:18:648:7:252:-15.5004,0,-51.1261	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.79	0/1:59:39,20:39:1381:20:712:-46.6341,0,-106.826	0/0:157:157,0:157:5648:0:0:0,-47.2617,-508.435	0/0:110:110,0:110:3960:0:0:0,-33.1133,-356.589	0/1:83:43,40:43:1548:40:1436:-104.536,0,-114.628	0/0:203:203,0:203:7276:0:0:0,-61.1091,-654.89	0/1:12:9,3:9:324:3:108:-6.46156,0,-25.8935	0/0:157:156,0:156:5600:0:0:0,-46.9607,-503.759	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.904	0/1:26:19,7:19:684:7:252:-15.1993,0,-54.0631	0/1:38:26,12:26:932:12:432:-27.7772,0,-72.7597	0/1:57:37,20:37:1328:20:720:-47.9578,0,-102.664	0/1:2:1,1:1:36:1:36:-2.99577,0,-2.99621	0/1:26:21,5:21:756:5:180:-8.71895,0,-60.54	0/1:65:39,26:39:1400:26:928:-64.2613,0,-106.732	0/1:60:31,29:31:1112:29:1040:-75.8411,0,-82.3295	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:189:127,62:127:4560:62:2232:-144.224,0,-353.669	0/1:131:67,64:67:2412:64:2292:-167.077,0,-177.901	0/1:58:26,32:26:928:32:1148:-86.1575,0,-66.3785	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/1:96:68,28:68:2432:28:1008:-62.1262,0,-190.235	0/1:85:44,41:44:1580:41:1476:-107.524,0,-116.904	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.669	0/1:53:29,24:29:1044:24:864:-62.1183,0,-78.3202	0/1:19:16,3:16:576:3:108:-4.35435,0,-46.4554	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.891	0/1:30:22,8:22:792:8:280:-16.5056,0,-62.5748	0/0:145:145,0:145:5196:0:0:0,-43.6493,-467.778	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.134	0/1:50:17,33:17:604:33:1188:-92.1638,0,-39.6391	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/1:8:3,5:3:108:5:180:-14.1418,0,-7.66693	0/0:74:73,1:73:2628:1:36:0,-18.6784,-233.168	0/1:52:36,16:36:1296:16:576:-36.515,0,-101.29	0/0:140:140,0:140:5028:0:0:0,-42.1442,-452.664	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:22:14,8:14:500:8:288:-19.6415,0,-38.7135	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.754	0/1:23:13,10:13:468:10:360:-25.8166,0,-35.536	0/1:47:25,22:25:900:22:788:-57.0835,0,-67.1726	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.612	0/1:14:10,4:10:351:4:144:-9.09755,0,-27.7123	0/1:38:26,12:26:936:12:432:-27.773,0,-73.1203	0/1:22:9,13:9:324:13:464:-35.4698,0,-22.8832	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.683	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.753
chr05	11909010	.	A	G	79720.2	PASS	AB=0.4996;ABP=3.01377;AC=138;AF=0.741935;AN=186;AO=3761;CIGAR=1X;DP=5021;DPB=5021;DPRA=27.5659;EPP=7682.33;EPPR=2488.64;GTI=2;LEN=1;MEANALT=1.01099;MQM=59.987;MQMR=60;NS=93;NUMALT=1;ODDS=0.492035;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132554;QR=44878;RO=1258;RPL=3704;RPP=7682.33;RPPR=2488.64;RPR=57;RUN=1;SAF=0;SAP=8169.92;SAR=3761;SRF=0;SRP=2734.72;SRR=1258;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:2,7:2:72:7:244:-19.5902,0,-4.12745	1/1:40:0,40:0:0:40:1419:-128.007,-12.0412,0	0/1:75:22,53:22:771:53:1840:-143.3,0,-47.1331	1/1:130:0,130:0:0:130:4587:-413,-39.1339,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:31:18,13:18:644:13:449:-31.4056,0,-48.9587	1/1:55:0,55:0:0:55:1951:-175.865,-16.5567,0	0/1:42:13,29:13:468:29:1022:-79.6476,0,-29.8164	1/1:61:0,61:0:0:61:2144:-193.227,-18.3628,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:92:50,42:50:1784:42:1467:-104.626,0,-133.148	0/1:49:18,31:18:644:31:1096:-84.1995,0,-43.5401	0/1:87:48,39:48:1719:39:1384:-98.6692,0,-128.805	1/1:49:0,49:0:0:49:1724:-155.444,-14.7505,0	1/1:51:0,49:0:0:49:1716:-154.382,-14.7505,0	1/1:45:0,45:0:0:45:1587:-143.12,-13.5464,0	1/1:30:0,30:0:0:30:1063:-95.9808,-9.0309,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:94:45,49:45:1585:49:1724:-127.145,0,-114.641	1/1:67:0,67:0:0:67:2352:-211.927,-20.169,0	0/1:32:16,16:16:567:16:572:-42.1805,0,-41.7278	0/1:38:20,18:20:708:18:644:-46.8515,0,-52.6065	0/1:9:4,5:4:144:5:172:-13.1087,0,-10.6043	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:109:0,109:0:0:109:3846:-346.34,-32.8123,0	0/1:144:51,93:51:1807:93:3244:-248.832,0,-119.563	0/1:25:11,14:11:396:14:492:-37.0866,0,-28.457	0/1:185:98,87:98:3512:87:3067:-220.568,0,-260.599	0/1:70:36,34:36:1275:34:1207:-87.8632,0,-93.9802	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:7:0,7:0:0:7:236:-21.5676,-2.10721,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:185:1,184:1:36:184:6470:-578.798,-52.0923,0	1/1:41:0,41:0:0:41:1448:-130.616,-12.3422,0	1/1:29:0,29:0:0:29:1023:-92.3817,-8.72987,0	.:.:.:.:.:.:.:.	0/1:71:44,27:44:1571:27:936:-63.178,0,-120.308	0/1:31:23,8:23:824:8:276:-15.8433,0,-65.1514	0/1:57:28,29:28:1008:29:1027:-75.5835,0,-73.8776	0/1:60:30,30:30:1049:30:1061:-77.7308,0,-76.6561	1/1:55:0,55:0:0:55:1941:-174.965,-16.5567,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:59:0,59:0:0:59:2054:-185.129,-17.7608,0	0/1:85:40,45:40:1427:45:1569:-115.911,0,-103.139	1/1:49:0,49:0:0:49:1731:-156.074,-14.7505,0	1/1:98:0,98:0:0:98:3472:-312.692,-29.5009,0	1/1:36:0,36:0:0:36:1261:-113.79,-10.8371,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:99:45,54:45:1616:54:1863:-138.142,0,-115.928	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:44:0,44:0:0:44:1570:-141.592,-13.2453,0	0/1:87:46,41:46:1648:41:1460:-105.506,0,-122.419	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	0/1:155:83,72:83:2984:72:2552:-183.272,0,-222.132	0/1:94:49,45:49:1747:45:1579:-114.103,0,-129.217	0/1:39:18,21:18:644:21:748:-55.9051,0,-46.5504	0/1:36:20,16:20:712:16:568:-40.6148,0,-53.5696	1/1:49:0,49:0:0:49:1740:-156.884,-14.7505,0	0/1:88:52,36:52:1851:36:1267:-87.8413,0,-140.379	0/1:46:27,19:27:955:19:672:-46.9595,0,-72.4175	0/1:21:7,14:7:244:14:504:-39.3765,0,-15.9778	0/1:42:19,23:19:680:23:816:-61.1185,0,-48.8859	0/1:16:11,5:11:396:5:171:-10.909,0,-31.1663	1/1:77:0,77:0:0:77:2656:-239.287,-23.1793,0	1/1:39:0,39:0:0:39:1364:-123.056,-11.7402,0	1/1:52:0,52:0:0:52:1828:-164.798,-15.6536,0	1/1:91:0,91:0:0:91:3234:-291.282,-27.3937,0	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	1/1:82:1,81:1:36:81:2880:-255.84,-21.0862,0	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	1/1:66:0,66:0:0:66:2327:-209.691,-19.868,0	0/1:59:26,33:26:932:33:1164:-87.3056,0,-66.4381	1/1:73:0,73:0:0:73:2591:-233.44,-21.9752,0	1/1:55:0,55:0:0:55:1934:-174.335,-16.5567,0	0/1:49:28,21:28:993:21:739:-52.0809,0,-74.932	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	0/1:116:70,46:70:2490:46:1643:-113.238,0,-189.433	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:74:0,74:0:0:74:2538:-228.668,-22.2762,0	1/1:46:0,46:0:0:46:1634:-147.347,-13.8474,0	1/1:28:0,28:0:0:28:987:-89.143,-8.42884,0	0/1:135:61,74:61:2175:74:2576:-191.448,0,-155.377	0/1:67:47,20:47:1684:20:716:-44.5987,0,-131.678	1/1:124:0,124:0:0:124:4342:-390.963,-37.3277,0	1/1:92:0,92:0:0:92:3232:-291.101,-27.6948,0
chr05	12289745	.	C	G	56341.4	PASS	AB=0.529806;ABP=38.7369;AC=51;AF=0.277174;AN=184;AO=2491;CIGAR=1X;DP=10036;DPB=10036;DPRA=1.19184;EPP=5412.15;EPPR=16362.9;GTI=2;LEN=1;MEANALT=1.09434;MQM=59.9936;MQMR=59.9899;NS=92;NUMALT=1;ODDS=0.412791;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88520;QR=267926;RO=7538;RPL=1588;RPP=412.046;RPPR=3333.1;RPR=903;RUN=1;SAF=1588;SAP=412.046;SAR=903;SRF=5468;SRP=3329.18;SRR=2070;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:23,22:23:820:22:775:-56.5248,0,-60.5762	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/1:50:20,30:20:707:30:1080:-82.4618,0,-48.9031	0/0:269:268,1:268:9556:1:36:0,-77.3788,-856.4	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:187:95,92:95:3400:92:3235:-235.078,0,-249.922	0/0:97:97,0:97:3427:0:0:0,-29.1999,-308.644	0/1:86:47,39:47:1661:39:1392:-99.6904,0,-123.887	0/0:92:92,0:92:3268:0:0:0,-27.6948,-294.337	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.35	0/1:80:29,50:29:1017:50:1792:-137.511,0,-67.798	0/1:67:36,31:36:1263:31:1112:-80.2223,0,-93.8027	0/1:80:41,39:41:1442:39:1400:-102.217,0,-105.992	0/0:136:136,0:136:4838:0:0:0,-40.9401,-435.576	0/0:65:65,0:65:2309:0:0:0,-19.5669,-208.069	0/0:77:77,0:77:2735:0:0:0,-23.1793,-246.393	0/0:63:63,0:63:2229:0:0:0,-18.9649,-200.873	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/1:195:100,95:100:3561:95:3373:-245.086,0,-261.997	0/0:102:102,0:102:3624:0:0:0,-30.7051,-326.365	0/1:127:20,107:20:711:107:3777:-301.898,0,-26.0848	0/1:188:91,97:91:3244:97:3428:-252.144,0,-235.589	0/1:83:43,40:43:1508:40:1436:-104.552,0,-111.025	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.543	0/0:203:201,2:201:7110:2:72:0,-54.2724,-633.122	0/1:163:84,79:84:2965:79:2823:-205.241,0,-218.014	0/1:41:25,16:25:866:16:576:-39.8328,0,-65.9117	0/1:228:67,161:67:2360:161:5708:-445.204,0,-144.023	0/1:116:65,51:65:2321:51:1815:-128.711,0,-174.229	0/0:196:196,0:196:6994:0:0:0,-59.0019,-629.524	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:248:248,0:248:8780:0:0:0,-74.6554,-790.184	0/0:143:143,0:143:5066:0:0:0,-43.0473,-456.087	0/0:88:88,0:88:3092:0:0:0,-26.4906,-278.509	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:107:58,49:58:2064:49:1734:-124.133,0,-153.821	0/1:23:11,12:11:378:12:428:-31.9351,0,-27.4254	0/1:119:70,49:70:2504:49:1728:-119.98,0,-189.79	0/1:139:68,71:68:2432:71:2514:-184.669,0,-177.292	0/0:131:131,0:131:4620:0:0:0,-39.4349,-415.966	0/0:79:79,0:79:2773:0:0:0,-23.7814,-249.807	0/0:64:64,0:64:2265:0:0:0,-19.2659,-204.111	0/1:255:136,119:136:4864:119:4248:-305.738,0,-361.151	0/0:157:157,0:157:5609:0:0:0,-47.2617,-504.931	0/0:230:230,0:230:8236:0:0:0,-69.2369,-741.251	0/0:85:83,0:83:2954:0:0:0,-24.9855,-265.734	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:64:32,32:32:1131:32:1135:-83.1921,0,-82.8318	0/0:78:78,0:78:2775:0:0:0,-23.4803,-249.991	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/1:204:98,106:98:3476:106:3762:-277.37,0,-251.643	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:214:64,150:64:2292:150:5347:-416.945,0,-142.12	0/1:239:142,97:142:5019:97:3460:-239.665,0,-379.912	0/1:90:47,43:47:1666:43:1531:-110.99,0,-123.133	0/1:155:83,72:83:2945:72:2541:-182.28,0,-218.624	0/0:251:248,3:248:8851:3:108:0,-65.4834,-786.467	0/1:167:38,129:38:1351:129:4586:-362.635,0,-71.6176	0/1:29:16,13:16:576:13:460:-33.0055,0,-43.4451	0/1:66:35,31:35:1260:31:1103:-79.7118,0,-93.8375	0/1:131:57,74:57:2036:74:2615:-196.161,0,-144.077	0/1:17:8,9:8:261:9:308:-22.9343,0,-18.6905	0/0:54:54,0:54:1905:0:0:0,-16.2556,-171.726	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/0:85:85,0:85:3005:0:0:0,-25.5875,-270.682	0/0:230:229,1:229:8184:1:36:0,-65.6386,-732.977	0/1:97:43,54:43:1527:54:1940:-145.676,0,-108.522	0/0:133:133,0:133:4729:0:0:0,-40.037,-425.768	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:120:118,1:118:4182:1:36:0,-32.5841,-372.964	0/1:90:54,36:54:1936:36:1292:-89.4911,0,-147.424	0/0:272:270,1:270:9620:1:36:0,-78.3407,-862.072	0/0:163:163,0:163:5813:0:0:0,-49.0679,-523.284	0/1:131:68,63:68:2413:63:2229:-161.438,0,-177.99	0/0:166:166,0:166:5878:0:0:0,-49.971,-529.135	0/1:298:146,151:146:5176:151:5341:-391.064,0,-376.218	0/1:33:20,13:20:707:13:460:-31.8014,0,-54.0206	0/0:93:93,0:93:3257:0:0:0,-27.9958,-293.349	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/1:63:27,35:27:972:35:1256:-94.3216,0,-68.7742	0/1:141:52,89:52:1859:89:3168:-242.901,0,-125.144	0/0:203:201,2:201:7144:2:72:0,-54.2724,-636.183	0/0:271:271,0:271:9630:0:0:0,-81.5791,-866.654
chr05	12655335	.	C	T	113406	PASS	AB=0.480994;ABP=13.4933;AC=140;AF=0.744681;AN=188;AO=5383;CIGAR=1X;DP=7136;DPB=7136;DPRA=10.9508;EPP=11692;EPPR=3803.09;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9967;MQMR=59.9971;NS=94;NUMALT=1;ODDS=1.62433;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191986;QR=62622;RO=1750;RPL=0;RPP=11692;RPPR=3803.09;RPR=5383;RUN=1;SAF=5383;SAP=11692;SAR=0;SRF=1750;SRP=3803.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:13,16:13:464:16:551:-41.1831,0,-33.3676	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:170:88,82:88:3160:82:2942:-213.838,0,-233.449	1/1:251:0,251:0:0:251:8936:-804.219,-75.5585,0	1/1:26:0,26:0:0:26:924:-83.4771,-7.82678,0	1/1:42:0,42:0:0:42:1463:-131.958,-12.6433,0	0/1:56:33,23:33:1188:23:809:-56.2706,0,-90.3709	1/1:81:0,81:0:0:81:2889:-260.244,-24.3834,0	0/1:89:48,41:48:1716:41:1461:-104.992,0,-127.934	1/1:56:0,56:0:0:56:1989:-179.282,-16.8577,0	1/1:49:0,49:0:0:49:1737:-156.613,-14.7505,0	0/1:78:33,45:33:1188:45:1616:-122.25,0,-83.7483	0/1:62:31,31:31:1112:31:1112:-81.7275,0,-81.7275	0/1:42:19,23:19:684:23:824:-61.8401,0,-49.2471	1/1:66:0,66:0:0:66:2357:-212.387,-19.868,0	1/1:56:0,56:0:0:56:1991:-179.462,-16.8577,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:30:0,30:0:0:30:1042:-94.0855,-9.0309,0	0/1:92:41,51:41:1468:51:1802:-134.763,0,-104.721	1/1:159:1,158:1:36:158:5661:-506.01,-44.2655,0	0/1:81:47,34:47:1669:34:1224:-86.0836,0,-126.109	0/1:68:33,35:33:1176:35:1255:-92.7851,0,-85.6777	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:65:0,65:0:0:65:2317:-208.789,-19.567,0	1/1:256:0,256:0:0:256:9047:-814.208,-77.0637,0	0/1:225:118,107:118:4210:107:3802:-274.645,0,-311.347	0/1:30:13,17:13:464:17:612:-46.3825,0,-33.0666	0/1:283:148,135:148:5300:135:4811:-347.954,0,-391.943	0/1:69:42,27:42:1512:27:953:-65.3122,0,-115.604	1/1:116:3,113:3:108:113:4006:-350.651,-24.8443,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:20:0,20:0:0:20:690:-62.4168,-6.0206,0	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	1/1:169:0,169:0:0:169:6057:-545.23,-50.8741,0	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:114:64,50:64:2284:50:1788:-126.885,0,-171.505	0/1:26:16,10:16:576:10:356:-24.5545,0,-44.3482	0/1:68:29,39:29:1021:39:1396:-105.469,0,-71.7302	0/1:48:29,19:29:1040:19:672:-46.3574,0,-79.4649	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:89:0,89:0:0:89:3176:-286.064,-26.7917,0	1/1:77:0,77:0:0:77:2738:-246.66,-23.1793,0	0/1:163:82,81:82:2932:81:2859:-208.476,0,-215.047	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:116:0,115:0:0:115:4088:-367.894,-34.6185,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:11:4,7:4:144:7:244:-18.9881,0,-10.0023	1/1:68:0,68:0:0:68:2414:-217.513,-20.47,0	1/1:37:0,37:0:0:37:1314:-118.561,-11.1381,0	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:128:67,61:67:2389:61:2151:-155.32,0,-176.734	1/1:60:1,59:1:32:59:2116:-187.501,-14.8625,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:93:50,43:50:1781:43:1548:-111.617,0,-132.575	0/1:7:2,5:2:72:5:172:-13.7108,0,-4.72951	0/1:208:107,101:107:3832:101:3609:-262.4,0,-282.462	0/1:84:52,32:52:1872:32:1148:-78.3433,0,-143.473	0/1:62:34,28:34:1224:28:1004:-72.012,0,-91.8032	0/1:96:48,48:48:1724:48:1684:-122.944,0,-126.547	1/1:89:0,89:0:0:89:3173:-285.793,-26.7917,0	0/1:136:87,49:87:3097:49:1741:-116.032,0,-238.017	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:35:18,17:18:644:17:612:-44.8774,0,-47.7545	0/1:40:23,17:23:828:17:608:-43.0108,0,-62.8029	0/1:27:11,16:11:396:16:576:-44.0472,0,-27.8549	1/1:126:2,124:2:72:124:4411:-390.324,-31.0931,0	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	1/1:94:0,94:0:0:94:3357:-302.345,-28.2968,0	1/1:172:0,171:0:0:171:6125:-551.137,-51.4761,0	0/1:83:44,39:44:1576:39:1396:-100.954,0,-117.146	1/1:64:0,64:0:0:64:2277:-205.191,-19.2659,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:102:0,102:0:0:102:3649:-328.613,-30.7051,0	0/1:84:44,40:44:1568:40:1425:-103.259,0,-116.125	1/1:179:1,178:1:32:178:6359:-569.197,-50.6851,0	1/1:57:1,56:1:36:56:2012:-177.755,-13.5604,0	0/1:66:38,28:38:1359:28:1006:-70.9882,0,-102.742	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:115:49,66:49:1752:66:2357:-177.769,0,-123.346	0/1:18:11,7:11:392:7:248:-17.2457,0,-30.2015	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:81:0,81:0:0:81:2901:-261.324,-24.3834,0	1/1:57:0,57:0:0:57:2037:-183.6,-17.1587,0	0/1:100:46,54:46:1652:54:1940:-144.773,0,-118.865	0/1:71:37,34:37:1332:34:1224:-89.0939,0,-98.8093	1/1:168:0,167:0:0:167:5969:-537.105,-50.272,0	1/1:107:0,107:0:0:107:3833:-345.164,-32.2102,0
chr05	12701695	.	AAAT	TAAC,AAAC	160607	PASS	AB=0.453593,0.541752;ABP=67.3022,55.0505;AC=142,46;AF=0.755319,0.244681;AN=188;AO=5586,1877;CIGAR=1X2M1X,3M1X;DP=7485;DPB=7485;DPRA=16.086,1.07215;EPP=12132.9,4078.86;EPPR=5.18177;GTI=1;LEN=4,1;MEANALT=1.77419,2.26923;MQM=59.4612,59.9478;MQMR=60;NS=94;NUMALT=2;ODDS=1.45676;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=198680,67150;QR=36;RO=1;RPL=0,0;RPP=12132.9,4078.86;RPPR=5.18177;RPR=5586,1877;RUN=1,1;SAF=5586,1877;SAP=12132.9,4078.86;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,12,23:0:0:12,23:421,824:-101.818,-67.5596,-63.9473,-34.6119,0,-27.6882	1/1:126:0,125,0:0:0:125,0:4432,0:-398.593,-37.6288,0,-398.593,-37.6288,-398.593	1/2:78:0,31,46:0:0:31,46:1101,1628:-222.026,-132.6,-123.268,-89.4214,0,-75.574	1/1:169:0,169,0:0:0:169,0:6010,0:-540.909,-50.8741,0,-540.909,-50.8741,-540.909	1/1:63:0,62,0:0:0:62,0:2202,0:-198.086,-18.6639,0,-198.086,-18.6639,-198.086	1/1:76:0,75,0:0:0:75,0:2673,0:-240.514,-22.5773,0,-240.514,-22.5773,-240.514	1/2:94:0,48,45:0:0:48,45:1709,1612:-270.257,-131.611,-117.162,-138.788,0,-125.242	1/1:107:0,106,1:0:0:106,1:3754,36:-337.284,-31.9092,0,-334.347,-28.6119,-334.046	1/2:93:0,45,48:0:0:45,48:1603,1696:-269.008,-138.474,-124.928,-130.889,0,-116.44	1/1:97:0,97,0:0:0:97,0:3447,0:-310.424,-29.1999,0,-310.424,-29.1999,-310.424	1/1:48:0,48,0:0:0:48,0:1712,0:-154.364,-14.4494,0,-154.364,-14.4494,-154.364	1/2:65:0,36,29:0:0:36,29:1281,1036:-189.116,-84.824,-73.987,-104.649,0,-95.9189	1/2:70:0,24,46:0:0:24,46:858,1643:-204.27,-134.311,-127.086,-70.3165,0,-56.4691	1/2:35:0,18,17:0:0:18,17:643,604:-101.989,-49.5731,-44.1546,-52.7717,0,-47.6542	1/1:40:0,40,0:0:0:40,0:1423,0:-128.336,-12.0412,0,-128.336,-12.0412,-128.336	1/1:38:0,38,0:0:0:38,0:1347,0:-121.529,-11.4391,0,-121.529,-11.4391,-121.529	1/1:52:0,52,0:0:0:52,0:1864,0:-167.966,-15.6536,0,-167.966,-15.6536,-167.966	1/1:56:0,56,0:0:0:56,0:2000,0:-180.248,-16.8577,0,-180.248,-16.8577,-180.248	1/1:33:0,33,0:0:0:33,0:1163,0:-104.974,-9.93399,0,-104.974,-9.93399,-104.974	1/2:181:0,74,107:0:0:74,107:2634,3848:-528.966,-314.304,-292.028,-215.019,0,-182.809	1/1:136:0,136,0:0:0:136,0:4828,0:-434.641,-40.9401,0,-434.641,-40.9401,-434.641	1/2:126:0,41,85:0:0:41,85:1451,3033:-365.777,-247.611,-235.269,-118.52,0,-92.9322	1/2:112:0,45,67:0:0:45,67:1600,2400:-326.474,-196.088,-182.541,-130.743,0,-110.574	1/2:53:0,28,25:0:0:28,25:1002,896:-155.14,-73.4346,-65.0058,-82.0636,0,-74.5379	1/1:75:0,75,0:0:0:75,0:2648,0:-237.916,-22.5773,0,-237.916,-22.5773,-237.916	1/1:239:0,238,1:0:0:238,1:8462,36:-760.643,-71.6451,0,-757.705,-68.3479,-757.404	1/2:203:0,90,113:0:0:90,113:3190,4040:-589.612,-329.769,-302.677,-260.199,0,-226.182	1/2:31:0,7,24:0:0:7,24:251,860:-90.8632,-70.4971,-68.3899,-20.7231,0,-13.4984	1/2:192:0,74,118:0:0:74,118:2637,4211:-558.402,-343.458,-321.182,-215.3,0,-179.778	1/2:96:0,53,43:0:0:53,43:1869,1528:-276.523,-124.497,-108.542,-152.379,0,-139.435	1/1:118:0,117,1:0:0:117,1:4172,36:-375.277,-35.2205,0,-372.339,-31.9233,-372.038	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/1:15:0,14,1:0:0:14,1:504,36:-45.3254,-4.21442,0,-42.388,-0.917175,-42.087	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:2:0,2,0:0:0:2,0:66,0:-6.26795,-0.60206,0,-6.26795,-0.60206,-6.26795	1/1:179:0,179,0:0:0:179,0:6364,0:-572.683,-53.8844,0,-572.683,-53.8844,-572.683	1/1:156:0,156,0:0:0:156,0:5541,0:-498.076,-46.9607,0,-498.076,-46.9607,-498.076	1/1:42:0,42,0:0:0:42,0:1508,0:-135.983,-12.6433,0,-135.983,-12.6433,-135.983	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:123:0,44,78:0:0:44,78:1570,2796:-355.94,-228.041,-214.795,-127.898,0,-104.418	1/2:22:0,13,9:0:0:13,9:468,324:-64.983,-26.7966,-22.8832,-38.5463,0,-35.837	1/2:111:0,61,50:0:0:61,50:2161,1788:-322.115,-146.151,-127.788,-176.32,0,-161.269	1/2:66:0,39,27:0:0:39,27:1386,968:-192.148,-79.3096,-67.5694,-113.195,0,-105.068	1/1:61:0,61,0:0:0:61,0:2153,0:-193.978,-18.3628,0,-193.978,-18.3628,-193.978	1/1:59:0,59,0:0:0:59,0:2089,0:-188.26,-17.7608,0,-188.26,-17.7608,-188.26	1/1:77:0,76,0:0:0:76,0:2730,0:-245.551,-22.8783,0,-245.551,-22.8783,-245.551	1/2:107:0,45,60:0:0:45,60:1611,2144:-306.169,-174.806,-161.26,-131.36,0,-113.299	1/1:70:0,70,0:0:0:70,0:2463,0:-221.918,-21.0721,0,-221.918,-21.0721,-221.918	1/1:119:0,117,2:0:0:117,2:4156,68:-373.737,-35.2205,0,-368.221,-29.3649,-367.619	1/1:159:0,159,0:0:0:159,0:5651,0:-507.449,-47.8638,0,-507.449,-47.8638,-507.449	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/1:104:0,104,0:0:0:104,0:3649,0:-328.174,-31.3071,0,-328.174,-31.3071,-328.174	1/1:51:0,51,0:0:0:51,0:1806,0:-162.782,-15.3525,0,-162.782,-15.3525,-162.782	1/2:9:0,4,5:0:0:4,5:144,180:-26.7966,-15.0469,-13.8428,-12.1095,0,-10.6043	1/2:94:0,36,57:0:0:36,57:1284,2052:-271.33,-166.665,-155.828,-104.672,0,-87.5136	1/1:46:0,46,0:0:0:46,0:1614,0:-145.543,-13.8474,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chr05	12701710	.	G	C	119044	PASS	AB=0.455991;ABP=60.1583;AC=142;AF=0.755319;AN=188;AO=5535;CIGAR=1X;DP=7401;DPB=7401;DPRA=15.9054;EPP=11634.4;EPPR=3802.41;GTI=1;LEN=1;MEANALT=1.06452;MQM=59.4855;MQMR=59.9828;NS=94;NUMALT=1;ODDS=1.45052;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197583;QR=66512;RO=1860;RPL=45;RPP=11634.4;RPPR=3802.41;RPR=5490;RUN=1;SAF=5535;SAP=12022.1;SAR=0;SRF=1860;SRP=4041.95;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:24,12:24:843:12:423:-27.568,0,-65.3509	1/1:124:0,123:0:0:123:4370:-393.029,-37.0267,0	0/1:77:45,32:45:1616:32:1128:-78.4983,0,-122.551	1/1:167:0,166:0:0:166:5916:-532.091,-49.971,0	1/1:62:0,62:0:0:62:2224:-200.42,-18.6639,0	1/1:75:0,75:0:0:75:2669:-240.445,-22.5773,0	0/1:90:42,48:42:1500:48:1708:-126.247,0,-108.202	1/1:104:1,103:1:36:103:3694:-328.604,-27.7088,0	0/1:91:46,45:46:1648:45:1615:-118.125,0,-121.215	1/1:95:0,95:0:0:95:3404:-306.555,-28.5979,0	1/1:48:0,48:0:0:48:1711:-154.273,-14.4494,0	0/1:64:28,36:28:1008:36:1292:-97,0,-71.7704	0/1:68:45,23:45:1585:23:824:-54.0133,0,-122.468	0/1:34:16,17:16:576:17:612:-45.1109,0,-41.8816	1/1:40:0,40:0:0:40:1427:-128.713,-12.0412,0	1/1:38:0,38:0:0:38:1368:-123.416,-11.4391,0	1/1:52:0,52:0:0:52:1872:-168.653,-15.6536,0	1/1:56:0,56:0:0:56:2008:-180.968,-16.8577,0	1/1:33:0,33:0:0:33:1170:-105.605,-9.93399,0	0/1:180:106,74:106:3776:74:2643:-183.919,0,-285.853	1/1:136:0,136:0:0:136:4841:-435.819,-40.9401,0	0/1:128:88,40:88:3152:40:1423:-89.8336,0,-245.373	0/1:110:66,44:66:2368:44:1580:-109.378,0,-180.265	0/1:51:23,28:23:828:28:1004:-75.3187,0,-59.4916	1/1:74:0,74:0:0:74:2649:-238.195,-22.2762,0	1/1:235:0,235:0:0:235:8376:-752.523,-70.7421,0	0/1:201:112,89:112:4011:89:3165:-224.534,0,-300.671	0/1:31:24,7:24:864:7:252:-13.5895,0,-68.7506	0/1:188:114,74:114:4096:74:2644:-181.612,0,-311.604	0/1:92:41,51:41:1472:51:1827:-136.88,0,-105.081	1/1:115:1,113:1:36:113:4039:-360.081,-31.079,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:15:1,14:1:36:14:497:-41.4569,-0.917175,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:178:0,178:0:0:178:6377:-573.628,-53.5833,0	1/1:156:0,155:0:0:155:5516:-495.67,-46.6597,0	1/1:42:0,42:0:0:42:1485:-133.924,-12.6433,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:121:77,44:77:2772:44:1576:-105.596,0,-213.296	0/1:22:9,13:9:320:13:468:-35.837,0,-22.5197	0/1:113:52,61:52:1853:61:2177:-162.125,0,-133.031	0/1:68:28,40:28:1000:40:1421:-107.593,0,-69.8453	1/1:61:0,61:0:0:61:2151:-193.717,-18.3628,0	1/1:59:0,59:0:0:59:2111:-190.233,-17.7608,0	1/1:77:0,77:0:0:77:2760:-248.607,-23.1793,0	0/1:102:57,45:57:2036:45:1620:-115.371,0,-152.807	1/1:70:0,70:0:0:70:2503:-225.513,-21.0721,0	1/1:117:2,115:2:72:115:4124:-364.294,-28.3838,0	1/1:157:0,157:0:0:157:5567:-500.792,-47.2617,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:102:0,102:0:0:102:3626:-326.207,-30.7051,0	1/1:51:0,51:0:0:51:1802:-162.439,-15.3525,0	0/1:10:6,4:6:212:4:140:-9.93428,0,-16.4145	0/1:92:56,36:56:2003:36:1279:-87.7122,0,-152.848	1/1:46:0,46:0:0:46:1648:-148.602,-13.8474,0	0/1:9:8,1:8:280:1:36:-0.887999,0,-22.83	0/1:13:9,4:9:316:4:144:-9.39783,0,-24.8655	1/1:55:0,55:0:0:55:1972:-177.746,-16.5567,0	0/1:109:72,37:72:2560:37:1320:-86.2873,0,-197.839	0/1:6:4,1:4:144:1:27:-0.87973,0,-11.4486	0/1:152:88,64:88:3152:64:2290:-160.603,0,-238.148	0/1:149:63,86:63:2249:86:3057:-230.487,0,-157.818	0/1:65:33,32:33:1176:32:1130:-82.0008,0,-86.5808	0/1:86:35,51:35:1252:51:1828:-138.816,0,-87.0965	1/1:143:1,142:1:36:142:5070:-452.713,-39.449,0	0/1:131:87,44:87:3111:44:1584:-103.412,0,-240.782	0/1:10:3,7:3:104:7:239:-18.8323,0,-6.69251	0/1:87:48,39:48:1720:39:1396:-99.7332,0,-128.896	0/1:83:44,39:44:1580:39:1396:-100.952,0,-117.506	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:76:0,76:0:0:76:2712:-244.269,-22.8783,0	1/1:54:0,54:0:0:54:1924:-173.429,-16.2556,0	1/1:104:0,104:0:0:104:3730:-335.886,-31.3071,0	1/1:106:0,106:0:0:106:3783:-340.645,-31.9092,0	0/1:80:28,52:28:1008:52:1854:-142.91,0,-66.954	1/1:60:0,60:0:0:60:2152:-193.511,-18.0618,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:80:2,78:2:72:78:2769:-242.433,-17.2457,0	0/1:75:31,44:31:1108:44:1571:-119.095,0,-77.4537	1/1:166:0,166:0:0:166:5939:-533.404,-49.971,0	1/1:136:0,136:0:0:136:4865:-437.94,-40.9401,0	0/1:52:26,26:26:936:26:932:-68.5344,0,-68.9059	1/1:82:0,82:0:0:82:2933:-264.196,-24.6845,0	0/1:129:61,68:61:2163:68:2421:-179.261,0,-156.104	0/1:43:25,18:25:887:18:639:-44.8776,0,-67.2038	1/1:62:1,61:1:36:61:2166:-191.468,-15.0656,0	1/1:70:0,70:0:0:70:2510:-226.093,-21.0721,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:77:33,44:33:1184:44:1567:-118.051,0,-83.689	0/1:53:35,18:35:1251:18:639:-41.8837,0,-96.9397	1/1:107:0,107:0:0:107:3830:-344.87,-32.2102,0	1/1:76:0,76:0:0:76:2712:-243.803,-22.8783,0
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chr05	13118712	.	G	A	36606.1	PASS	AB=0.493607;ABP=4.56503;AC=47;AF=0.25;AN=188;AO=2168;CIGAR=1X;DP=9268;DPB=9268;DPRA=0.935646;EPP=4641.53;EPPR=15210.5;GTI=2;LEN=1;MEANALT=1.01961;MQM=59.9862;MQMR=59.9938;NS=94;NUMALT=1;ODDS=1.4473;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77363;QR=253921;RO=7095;RPL=8;RPP=4641.53;RPPR=15210.5;RPR=2160;RUN=1;SAF=2168;SAP=4710.76;SAR=0;SRF=7095;SRP=15409.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:17,20:17:604:20:720:-53.9907,0,-43.5525	0/0:81:80,1:80:2864:1:21:0,-22.2835,-255.897	0/1:169:60,108:60:2156:108:3819:-292.972,0,-143.374	0/0:239:238,0:238:8519:0:0:0,-71.6451,-766.349	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.679	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:60:34,26:34:1216:26:917:-64.7828,0,-91.6848	0/0:146:146,0:146:5214:0:0:0,-43.9504,-469.396	0/1:88:56,32:56:1985:32:1148:-77.1392,0,-152.432	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:80:39,41:39:1396:41:1468:-108.334,0,-101.857	0/1:91:42,49:42:1512:49:1756:-130.93,0,-108.981	0/1:100:52,48:52:1872:48:1724:-125.342,0,-138.656	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:150:61,89:61:2188:89:3177:-240.998,0,-152.031	0/0:136:136,0:136:4884:0:0:0,-40.9401,-439.711	0/1:129:33,96:33:1184:96:3441:-271.068,0,-68.0351	0/1:148:97,51:97:3472:51:1817:-119.257,0,-268.139	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:291:291,0:291:10444:0:0:0,-87.5997,-939.874	0/1:169:100,69:100:3587:69:2472:-171.86,0,-272.161	0/1:39:21,18:21:748:18:648:-46.9117,0,-55.9051	0/1:287:155,132:155:5564:132:4736:-340.002,0,-414.486	0/1:157:80,77:80:2868:77:2740:-199.579,0,-211.086	0/0:157:157,0:157:5580:0:0:0,-47.2617,-502.325	0/1:15:13,2:13:459:2:72:-2.32127,0,-37.1286	0/0:23:23,0:23:800:0:0:0,-6.92369,-72.3158	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:207:207,0:207:7439:0:0:0,-62.3132,-669.55	0/0:189:189,0:189:6755:0:0:0,-56.8947,-608.024	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:118:43,75:43:1548:75:2671:-205.112,0,-104.092	0/1:42:24,18:24:856:18:644:-45.6473,0,-64.7178	0/1:171:85,86:85:3039:86:3049:-223.164,0,-222.263	0/1:61:36,25:36:1283:25:892:-62.2369,0,-97.4098	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/0:96:96,0:96:3388:0:0:0,-28.8989,-305.134	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:196:94,102:94:3363:102:3645:-269.251,0,-243.884	0/0:136:136,0:136:4852:0:0:0,-40.9401,-436.833	0/0:187:187,0:187:6688:0:0:0,-56.2926,-601.995	0/0:72:71,0:71:2515:0:0:0,-21.3731,-226.243	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:135:135,0:135:4815:0:0:0,-40.639,-433.507	0/0:105:104,0:104:3719:0:0:0,-31.3071,-334.55	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:128:74,54:74:2647:54:1913:-133.912,0,-199.944	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/1:118:64,54:64:2300:54:1940:-139.355,0,-171.739	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:149:87,62:87:3116:62:2219:-155.121,0,-235.813	0/1:244:163,81:163:5835:81:2893:-187.15,0,-451.81	0/1:78:42,36:42:1504:36:1286:-92.5622,0,-112.174	0/1:109:50,59:50:1796:59:2086:-155.196,0,-129.11	0/0:206:203,3:203:7262:3:108:0,-51.937,-643.556	0/1:184:63,121:63:2268:121:4321:-333.676,0,-148.992	0/1:31:18,13:18:635:13:456:-32.04,0,-48.145	0/1:65:26,39:26:932:39:1367:-103.759,0,-64.6319	0/1:45:20,25:20:720:25:896:-67.414,0,-51.5824	0/1:24:17,7:17:608:7:252:-15.8042,0,-47.8273	0/0:150:150,0:150:5376:0:0:0,-45.1545,-483.971	0/0:76:75,1:75:2696:1:32:0,-19.679,-239.684	0/0:201:201,0:201:7199:0:0:0,-60.507,-647.941	0/0:132:131,1:131:4704:1:36:0,-36.1377,-419.908	0/1:145:63,82:63:2234:82:2928:-220.106,0,-157.674	0/0:124:124,0:124:4435:0:0:0,-37.3277,-399.321	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/0:110:109,0:109:3899:0:0:0,-32.8123,-350.744	0/1:93:42,51:42:1512:51:1817:-135.814,0,-108.379	0/0:225:225,0:225:8073:0:0:0,-67.7317,-726.584	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:98:62,36:62:2212:36:1288:-86.7226,0,-169.844	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:165:86,79:86:3080:79:2824:-204.729,0,-227.758	0/1:38:25,13:25:896:13:464:-30.6584,0,-69.5212	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/1:139:66,73:66:2368:73:2608:-193.125,0,-171.535	0/1:81:31,50:31:1091:50:1784:-136.459,0,-74.1153	0/0:149:149,0:149:5329:0:0:0,-44.8535,-479.742	0/0:106:106,0:106:3783:0:0:0,-31.9092,-340.669
chr05	13349807	.	A	T	17685.6	PASS	AB=0.266094;ABP=3265.89;AC=49;AF=0.263441;AN=186;AO=1848;CIGAR=1X;DP=11784;DPB=11784;DPRA=1.23365;EPP=4007.21;EPPR=21528.8;GTI=9;LEN=1;MEANALT=1.08929;MQM=40.3193;MQMR=59.9937;NS=93;NUMALT=1;ODDS=3.10284;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66101;QR=353247;RO=9925;RPL=1847;RPP=4007.21;RPPR=21502.8;RPR=1;RUN=1;SAF=1848;SAP=4015.89;SAR=0;SRF=9920;SRP=21511.5;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:52,6:52:1856:6:216:-0.680452,0,-149.86	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/0:173:173,0:173:6159:0:0:0,-52.0782,-554.413	0/1:452:364,88:364:12992:88:3152:-138.07,0,-1033.03	0/1:102:54,48:54:1924:48:1715:-114.629,0,-142.732	0/1:57:25,32:25:896:32:1133:-78.3823,0,-63.7567	0/1:165:126,39:126:4496:39:1404:-73.3675,0,-355.14	0/0:174:174,0:174:6195:0:0:0,-52.3792,-557.648	0/1:164:135,29:135:4799:29:1027:-34.7688,0,-382.7	0/1:135:85,50:85:3008:50:1781:-114.66,0,-230.315	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:124:93,31:93:3286:31:1103:-54.2362,0,-258.631	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:45:45,0:45:1590:0:0:0,-13.5463,-143.389	0/0:77:77,0:77:2730:0:0:0,-23.1793,-245.943	0/1:90:69,21:69:2452:21:756:-37.8322,0,-193.843	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:28:28,0:28:987:0:0:0,-8.42884,-89.143	0/1:31:17,14:17:595:14:500:-32.7609,0,-44.5447	0/1:468:356,111:356:12740:111:3988:-207.374,0,-1005.48	0/1:247:191,56:191:6805:56:2012:-99.3552,0,-538.17	0/0:207:207,0:207:7391:0:0:0,-62.3132,-665.239	0/0:152:139,12:139:4930:12:432:0,-7.99694,-406.036	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.526	0/1:80:67,13:67:2392:13:468:-15.9679,0,-191.455	0/0:315:314,0:314:11152:0:0:0,-94.5234,-1003.26	0/1:326:256,69:256:9122:69:2468:-112.048,0,-722.765	0/1:53:29,24:29:1031:24:843:-57.5794,0,-77.148	0/0:391:391,0:391:13885:0:0:0,-117.703,-1249.42	0/1:272:215,57:215:7651:57:2044:-93.9908,0,-606.752	0/0:107:106,1:106:3768:1:36:0,-28.6119,-335.721	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:15:11,4:11:392:4:144:-8.26617,0,-31.1046	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:12:8,4:8:288:4:144:-8.92176,0,-22.655	0/0:201:201,0:201:7103:0:0:0,-60.507,-639.338	0/1:268:187,81:187:6640:81:2895:-164.02,0,-517.004	0/1:53:32,21:32:1127:21:747:-47.4782,0,-85.7829	.:.:.:.:.:.:.:.	0/0:231:231,0:231:8223:0:0:0,-69.5379,-740.088	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:233:194,39:194:6869:39:1391:-48.4174,0,-548.147	0/1:81:49,32:49:1724:32:1139:-73.5741,0,-131.059	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.835	0/1:138:99,39:99:3540:39:1396:-80.5119,0,-277.267	0/0:152:152,0:152:5389:0:0:0,-45.7566,-485.037	0/0:293:292,0:292:10418:0:0:0,-87.9008,-937.184	0/1:122:74,48:74:2643:48:1720:-112.781,0,-201.391	0/1:236:175,58:175:6236:58:2070:-110.177,0,-490.866	0/1:191:148,43:148:5289:43:1544:-78.7283,0,-418.644	0/1:5:3,2:3:108:2:72:-5.12157,0,-8.57002	0/1:141:99,41:99:3518:41:1476:-81.5742,0,-274.338	0/1:105:95,10:95:3404:10:360:-0.658309,0,-274.966	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:159:159,0:159:5618:0:0:0,-47.8638,-505.747	0/1:61:48,13:48:1712:13:464:-22.3024,0,-136.003	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/1:19:8,11:8:284:11:396:-28.6724,0,-20.1838	0/1:90:65,25:65:2324:25:896:-50.0853,0,-182.327	0/0:94:93,1:93:3315:1:36:0,-24.7758,-295.048	0/1:10:9,1:9:324:1:36:-0.510709,0,-26.4956	0/1:379:271,108:271:9609:108:3865:-227.932,0,-750.686	0/0:226:225,0:225:8035:0:0:0,-67.7317,-722.812	0/1:97:71,26:71:2527:26:936:-51.4258,0,-198.482	0/0:135:134,0:134:4796:0:0:0,-40.338,-431.436	0/1:314:268,46:268:9517:46:1643:-50.5368,0,-761.971	0/0:153:151,2:151:5371:2:72:0,-39.3677,-476.836	0/1:30:23,7:23:824:7:243:-12.3314,0,-65.4524	0/1:87:59,28:59:2099:28:1004:-58.1424,0,-162.989	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:28:28,0:28:988:0:0:0,-8.42884,-89.2339	0/0:182:182,0:182:6495:0:0:0,-54.7875,-584.637	0/0:83:83,0:83:2960:0:0:0,-24.9855,-266.634	0/0:141:141,0:141:5032:0:0:0,-42.4452,-453.028	0/0:179:179,0:179:6361:0:0:0,-53.8844,-572.584	0/1:146:92,54:92:3284:54:1936:-118.306,0,-251.83	0/1:162:116,46:116:4123:46:1652:-89.9983,0,-322.49	0/0:26:24,2:24:860:2:72:0,-1.47449,-71.3695	0/1:177:109,68:109:3884:68:2425:-154.324,0,-296.474	0/1:174:134,40:134:4771:40:1432:-65.8808,0,-377.17	0/0:187:186,1:186:6632:1:32:0,-53.1061,-593.776	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:200:120,80:120:4294:80:2863:-190.605,0,-326.43	0/1:56:29,27:29:1004:27:966:-62.4113,0,-73.81	0/1:100:66,34:66:2338:34:1196:-69.6503,0,-180.576	0/1:91:70,21:70:2491:21:752:-35.5246,0,-197.049	0/1:34:27,7:27:964:7:252:-10.0404,0,-76.8418	0/1:80:59,21:59:2112:21:756:-40.5004,0,-166.267	0/1:135:81,54:81:2879:54:1932:-129.26,0,-218.708	0/0:109:109,0:109:3888:0:0:0,-32.8123,-350.116	0/0:89:87,2:87:3100:2:68:0,-20.4382,-272.872
chr05	13349890	.	G	A	41929.6	PASS	AB=0.530826;ABP=40.7637;AC=49;AF=0.260638;AN=188;AO=2446;CIGAR=1X;DP=9558;DPB=9558;DPRA=0.953483;EPP=5184.94;EPPR=14769.9;GTI=1;LEN=1;MEANALT=1.05357;MQM=47.1697;MQMR=59.9094;NS=94;NUMALT=1;ODDS=5.33991;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87664;QR=254006;RO=7109;RPL=2431;RPP=5184.94;RPPR=14786.9;RPR=15;RUN=1;SAF=0;SAP=5314.43;SAR=2446;SRF=2;SRP=15422.6;SRR=7107;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:26,34:26:913:34:1224:-90.1492,0,-64.4222	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.277	0/1:210:92,118:92:3288:118:4231:-311.003,0,-232.811	0/0:204:203,1:203:7260:1:36:0,-57.8313,-649.853	0/0:31:30,1:30:1076:1:36:0,-5.76512,-93.586	0/0:82:82,0:82:2894:0:0:0,-24.6845,-260.679	0/1:90:43,47:43:1540:47:1673:-122.497,0,-111.8	0/0:144:144,0:144:5138:0:0:0,-43.3483,-462.518	0/1:294:137,157:137:4895:157:5616:-406.898,0,-352.2	0/0:81:81,0:81:2901:0:0:0,-24.3834,-261.316	0/0:61:61,0:61:2164:0:0:0,-18.3628,-195.025	0/1:72:32,40:32:1144:40:1430:-104.435,0,-81.5954	0/1:59:25,34:25:891:34:1209:-89.4231,0,-62.748	0/1:112:63,49:63:2256:49:1749:-121.981,0,-169.588	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:79:78,1:78:2770:1:36:0,-20.2146,-245.944	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.682	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.8762	0/1:155:69,86:69:2472:86:3088:-229.632,0,-176.063	0/0:186:186,0:186:6633:0:0:0,-55.9916,-597.045	0/1:152:50,102:50:1788:102:3664:-282.975,0,-115.446	0/1:184:89,95:89:3180:95:3402:-248.403,0,-231.034	0/1:76:42,33:42:1508:33:1169:-81.2292,0,-113.253	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.895	0/0:349:347,2:347:12400:2:72:0,-98.2451,-1109.02	0/1:220:107,113:107:3848:113:4067:-295.878,0,-280.288	0/1:22:9,13:9:320:13:464:-35.1205,0,-22.5197	0/1:278:136,141:136:4867:141:5039:-364.707,0,-354.537	0/1:145:66,79:66:2352:79:2836:-208.43,0,-168.288	0/0:143:143,0:143:5065:0:0:0,-43.0473,-455.994	0/1:12:6,6:6:216:6:212:-15.6565,0,-16.1782	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1226	0/1:9:2,7:2:72:7:252:-19.8541,0,-4.12745	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:12:4,8:4:144:8:288:-22.3372,0,-9.70126	0/0:185:185,0:185:6631:0:0:0,-55.6905,-596.852	0/0:153:153,0:153:5468:0:0:0,-46.0576,-492.248	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	1/1:4:0,4:0:0:4:144:-13.1972,-1.20412,0	0/1:141:73,68:73:2624:68:2434:-174.003,0,-193.962	0/1:27:16,11:16:576:11:396:-27.5237,0,-44.0472	0/1:137:61,76:61:2157:76:2732:-201.397,0,-153.155	0/1:49:30,19:30:1063:19:684:-46.7935,0,-81.2296	0/0:44:44,0:44:1576:0:0:0,-13.2453,-141.985	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/0:134:134,0:134:4795:0:0:0,-40.338,-431.636	0/1:170:76,94:76:2724:94:3365:-249.829,0,-194.228	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/0:120:120,0:120:4312:0:0:0,-36.1236,-386.886	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/1:10:6,4:6:216:4:144:-10.2311,0,-16.7802	0/0:145:145,0:145:5177:0:0:0,-43.6493,-466.07	0/0:86:86,0:86:3079:0:0:0,-25.8886,-276.848	0/1:21:17,4:17:608:4:144:-6.80788,0,-48.7304	0/1:140:58,82:58:2068:82:2925:-218.843,0,-144.247	0/0:64:63,1:63:2236:1:36:0,-15.6872,-197.923	0/1:12:4,8:4:144:8:288:-22.569,0,-9.70126	0/1:15:11,4:11:392:4:144:-8.75454,0,-31.1046	0/0:77:77,0:77:2740:0:0:0,-23.1793,-246.844	0/1:102:55,47:55:1967:47:1692:-119.713,0,-146.599	0/1:15:5,10:5:180:10:356:-27.6988,0,-12.0366	0/1:216:91,125:91:3264:125:4498:-336.912,0,-228.8	0/1:186:99,87:99:3544:87:3124:-221.909,0,-263.177	0/1:77:47,30:47:1665:30:1080:-72.6006,0,-126.956	0/1:111:55,56:55:1961:56:1997:-145.59,0,-143.242	0/0:225:225,0:225:8067:0:0:0,-67.7317,-726.043	0/1:134:46,88:46:1644:88:3156:-241.847,0,-107.133	0/1:53:30,23:30:1076:23:828:-58.1335,0,-80.9946	0/1:45:14,31:14:500:31:1116:-85.8121,0,-31.7898	0/1:40:18,22:18:640:22:792:-58.7312,0,-45.8881	0/1:28:18,10:18:644:10:356:-23.7579,0,-49.8618	0/0:121:121,0:121:4325:0:0:0,-36.4246,-389.424	0/0:86:83,2:83:2959:2:72:0,-19.2035,-259.61	0/0:345:345,0:345:12307:0:0:0,-103.855,-1107.17	0/0:150:150,0:150:5372:0:0:0,-45.1545,-483.603	0/1:108:53,55:53:1908:55:1972:-140.774,0,-139.486	0/0:94:94,0:94:3353:0:0:0,-28.2968,-301.986	0/1:28:11,17:11:388:17:612:-45.6701,0,-26.8285	0/0:87:82,5:82:2925:5:176:0,-10.1322,-247.426	0/1:115:60,55:60:2137:55:1976:-140.111,0,-157.978	0/0:198:198,0:198:7081:0:0:0,-59.6039,-637.348	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.182	0/1:69:31,38:31:1108:38:1368:-101.358,0,-79.2599	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.139	0/1:139:73,66:73:2599:66:2372:-169.278,0,-192.314	0/1:35:15,20:15:540:20:720:-53.3532,0,-38.4005	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.769	0/0:98:98,0:98:3486:0:0:0,-29.5009,-313.952	0/0:59:59,0:59:2102:0:0:0,-17.7608,-189.448	0/1:113:52,61:52:1868:61:2175:-159.416,0,-134.36	0/1:76:21,55:21:752:55:1961:-151.993,0,-45.128	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.305	0/0:106:105,1:105:3771:1:36:0,-28.3304,-336.009
chr05	13629666	.	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chr05	13710541	.	GATCACA	GA,GGTCACA	70629.9	PASS	AB=0.527715,0.468229;ABP=17.8153,22.4655;AC=139,49;AF=0.739362,0.260638;AN=188;AO=4061,1046;CIGAR=1M5D1M,1M1X5M;DP=5120;DPB=2219.29;DPRA=56.2308,0.814146;EPP=8821.36,2274.37;EPPR=6.91895;GTI=5;LEN=5,1;MEANALT=1.57143,2.06122;MQM=27.867,31.9627;MQMR=33.6;NS=94;NUMALT=2;ODDS=0.140774;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=138394,33180;QR=163;RO=5;RPL=0,0;RPP=8821.36,2274.37;RPPR=6.91895;RPR=4061,1046;RUN=1,1;SAF=4061,1046;SAP=8821.36,2274.37;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,19,2:0:0:19,2:622,56:-40.7784,-5.71957,0,-36.8806,-1.57292,-36.2785	1/1:36:0,36,0:0:0:36,0:1257,0:-78.6128,-10.8371,0,-78.6128,-10.8371,-78.6128	1/2:82:0,42,40:0:0:42,40:1441,1135:-157.854,-79.9941,-67.3509,-78.1077,0,-66.0665	1/1:159:1,158,0:1:36:158,0:5329,0:-382.661,-45.2152,0,-382.962,-47.5627,-385.044	1/1:20:0,20,0:0:0:20,0:696,0:-47.5719,-6.0206,0,-47.5719,-6.0206,-47.5719	1/1:26:0,26,0:0:0:26,0:893,0:-57.1653,-7.82678,0,-57.1653,-7.82678,-57.1653	1/2:26:0,9,17:0:0:9,17:316,555:-60.4857,-40.5251,-37.8158,-20.2462,0,-15.1287	1/1:63:0,63,0:0:0:63,0:2128,0:-136.052,-18.9649,0,-136.052,-18.9649,-136.052	1/2:57:0,30,27:0:0:30,27:988,781:-110.606,-55.1132,-46.0823,-55.7421,0,-47.6143	1/1:55:0,55,0:0:0:55,0:1898,0:-135.243,-16.5567,0,-135.243,-16.5567,-135.243	1/1:19:1,18,0:1:35:18,0:640,0:-39.4482,-3.08334,0,-39.7492,-5.41854,-41.8211	1/2:56:0,26,30:0:0:26,30:909,864:-108.539,-61.081,-53.2542,-47.7046,0,-38.6737	1/2:50:0,33,17:0:0:33,17:1145,492:-96.623,-34.8203,-24.8864,-62.056,0,-56.9384	1/2:19:0,10,8:0:0:10,8:356,248:-36.7475,-17.8343,-14.824,-18.9843,0,-16.576	1/1:45:0,45,0:0:0:45,0:1581,0:-111.525,-13.5464,0,-111.525,-13.5464,-111.525	1/1:31:0,31,0:0:0:31,0:1096,0:-73.855,-9.33193,0,-73.855,-9.33193,-73.855	1/1:10:0,10,0:0:0:10,0:337,0:-21.9003,-3.0103,0,-21.9003,-3.0103,-21.9003	1/1:20:0,20,0:0:0:20,0:685,0:-42.9331,-6.0206,0,-42.9331,-6.0206,-42.9331	1/1:14:1,13,0:1:32:13,0:464,0:-26.4871,-1.63354,0,-26.7882,-3.91339,-28.8108	1/2:138:0,76,62:0:0:76,62:2542,2039:-311.551,-148.396,-125.518,-163.441,0,-144.778	1/1:118:0,118,0:0:0:118,0:4009,0:-273.242,-35.5215,0,-273.242,-35.5215,-273.242	1/2:27:1,14,12:1:28:14,12:485,417:-59.4209,-28.5992,-26.6005,-28.9251,0,-27.5314	1/2:80:0,30,47:0:0:30,47:1032,1526:-175.773,-110.616,-101.585,-65.2482,0,-51.0998	1/2:36:0,27,9:0:0:27,9:896,273:-74.3887,-19.6975,-11.5697,-54.9608,0,-52.2515	1/1:40:0,40,0:0:0:40,0:1339,0:-91.2897,-12.0412,0,-91.2897,-12.0412,-91.2897	1/1:208:1,207,0:1:32:207,0:7030,0:-530.191,-60.0334,0,-530.492,-62.3132,-532.514	1/2:126:0,74,52:0:0:74,52:2482,1590:-262.923,-114.061,-91.7844,-149.131,0,-133.478	1/2:25:0,11,14:0:0:11,14:360,416:-50.1504,-29.9383,-26.627,-20.4636,0,-16.2492	1/2:164:0,87,77:0:0:87,77:2924,2658:-392.47,-196.115,-169.926,-196.656,0,-173.476	1/2:65:0,45,19:0:0:45,19:1504,589:-130.833,-42.1458,-28.5994,-88.6792,0,-82.9596	1/1:65:0,65,0:0:0:65,0:2215,0:-160.353,-19.567,0,-160.353,-19.567,-160.353	1/2:4:0,1,3:0:0:1,3:36,93:-9.01346,-6.93451,-6.63348,-2.34757,0,-1.44448	1/1:9:0,9,0:0:0:9,0:293,0:-20.8838,-2.70927,0,-20.8838,-2.70927,-20.8838	1/2:8:0,5,3:0:0:5,3:176,87:-15.9208,-6.37479,-4.86964,-9.80058,0,-8.89749	1/1:5:0,5,0:0:0:5,0:165,0:-10.8772,-1.50515,0,-10.8772,-1.50515,-10.8772	1/2:7:0,6,1:0:0:6,1:200,29:-13.6349,-2.29821,-0.492033,-11.5943,0,-11.2933	1/1:138:0,138,0:0:0:138,0:4791,0:-360.814,-41.5421,0,-360.814,-41.5421,-360.814	1/1:70:0,70,0:0:0:70,0:2361,0:-160.782,-21.0721,0,-160.782,-21.0721,-160.782	1/1:14:0,14,0:0:0:14,0:472,0:-30.8276,-4.21442,0,-30.8276,-4.21442,-30.8276	2/2:1:0,0,1:0:0:0,1:0,31:-2.79914,-2.79914,-2.79914,-0.30103,-0.30103,0	1/2:58:0,32,26:0:0:32,26:1063,792:-120.53,-56.769,-47.1361,-64.0266,0,-56.1998	1/2:12:0,6,6:0:0:6,6:216,181:-25.765,-13.2734,-11.4672,-12.7611,0,-10.9549	1/2:37:0,23,14:0:0:23,14:804,424:-77.6853,-30.6632,-23.7395,-47.2915,0,-43.077	1/2:32:0,15,17:0:0:15,17:528,560:-74.1771,-40.9777,-36.4623,-33.4881,0,-28.3706	1/1:39:0,39,0:0:0:39,0:1345,0:-96.6222,-11.7402,0,-96.6222,-11.7402,-96.6222	1/1:79:0,79,0:0:0:79,0:2657,0:-203.107,-23.7814,0,-203.107,-23.7814,-203.107	1/1:32:0,32,0:0:0:32,0:1105,0:-70.2357,-9.63296,0,-70.2357,-9.63296,-70.2357	1/2:90:0,54,36:0:0:54,36:1855,1160:-201.486,-84.6861,-68.4305,-117.086,0,-106.249	1/1:94:0,94,0:0:0:94,0:3244,0:-231.919,-28.2968,0,-231.919,-28.2968,-231.919	1/1:58:0,58,0:0:0:58,0:1965,0:-142.808,-17.4597,0,-142.808,-17.4597,-142.808	1/1:124:0,124,0:0:0:124,0:4113,0:-310.252,-37.3277,0,-310.252,-37.3277,-310.252	1/1:2:0,2,0:0:0:2,0:68,0:-5.26759,-0.60206,0,-5.26759,-0.60206,-5.26759	1/1:68:0,68,0:0:0:68,0:2348,0:-149.521,-20.47,0,-149.521,-20.47,-149.521	1/1:38:0,38,0:0:0:38,0:1321,0:-98.6467,-11.4391,0,-98.6467,-11.4391,-98.6467	2/2:1:0,0,1:0:0:0,1:0,29:-2.59924,-2.59924,-2.59924,-0.30103,-0.30103,0	1/2:91:0,38,53:0:0:38,53:1265,1641:-194.095,-117.664,-106.225,-76.697,0,-60.7424	1/1:35:0,35,0:0:0:35,0:1190,0:-85.8409,-10.5361,0,-85.8409,-10.5361,-85.8409	1/2:6:0,2,4:0:0:2,4:68,140:-1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chr05	13710585	.	A	T	11744.1	PASS	AB=0.464677;ABP=27.7083;AC=49;AF=0.260638;AN=188;AO=1067;CIGAR=1X;DP=5358;DPB=5358;DPRA=0.783153;EPP=2319.97;EPPR=9314.28;GTI=5;LEN=1;MEANALT=1.02;MQM=31.7779;MQMR=28.5473;NS=94;NUMALT=1;ODDS=1.89619;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38016;QR=151611;RO=4288;RPL=1066;RPP=2311.29;RPPR=9314.28;RPR=1;RUN=1;SAF=1066;SAP=2311.29;SAR=1;SRF=4288;SRP=9314.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:20,2:20:704:2:72:0,-1.42646,-40.217	0/0:42:42,0:42:1488:0:0:0,-12.6433,-92.4549	0/1:81:41,40:41:1451:40:1409:-75.1922,0,-64.8316	0/0:159:159,0:159:5647:0:0:0,-47.8638,-399.608	0/0:21:21,0:21:744:0:0:0,-6.32163,-50.1396	0/0:28:28,0:28:984:0:0:0,-8.42884,-62.285	0/1:26:9,17:9:324:17:608:-39.6862,0,-15.3061	0/0:66:66,0:66:2332:0:0:0,-19.868,-145.918	0/1:56:30,26:30:1059:26:932:-49.1696,0,-49.7603	0/0:58:57,0:57:2024:0:0:0,-17.1587,-145.61	0/0:23:23,0:23:816:0:0:0,-6.92369,-54.7755	0/1:59:27,32:27:930:32:1139:-61.6407,0,-40.3776	0/1:53:36,17:36:1288:17:603:-27.0646,0,-64.0375	0/1:20:11,9:11:384:9:316:-17.3618,0,-18.3665	0/0:48:48,0:48:1708:0:0:0,-14.4494,-120.671	0/0:36:36,0:36:1266:0:0:0,-10.8371,-85.7173	0/0:12:12,0:12:420:0:0:0,-3.61236,-27.4715	0/0:21:21,0:21:748:0:0:0,-6.32163,-45.7406	0/0:15:15,0:15:532:0:0:0,-4.51545,-34.5761	0/1:136:74,62:74:2644:62:2219:-132.6,0,-146.468	0/0:126:126,0:126:4467:0:0:0,-37.9298,-296.976	0/1:27:14,13:14:477:13:452:-29.6886,0,-27.888	0/1:85:33,52:33:1163:52:1848:-114.756,0,-56.9001	0/1:36:27,9:27:943:9:320:-13.0953,0,-53.3367	0/0:41:41,0:41:1449:0:0:0,-12.3422,-96.1478	0/0:226:226,0:226:8020:0:0:0,-68.0328,-598.547	0/1:127:74,53:74:2603:53:1869:-101.735,0,-137.357	0/1:23:10,13:10:336:13:459:-27.2254,0,-15.9066	0/1:169:92,77:92:3276:77:2745:-172.368,0,-194.558	0/1:65:45,20:45:1586:20:720:-34.3847,0,-85.4278	0/0:71:71,0:71:2520:0:0:0,-21.3731,-178.424	0/1:5:1,4:1:36:4:144:-9.52363,0,-1.14345	0/0:9:9,0:9:324:0:0:0,-2.70927,-21.7185	0/1:8:6,2:6:216:2:72:-2.95181,0,-11.0741	0/0:5:5,0:5:180:0:0:0,-1.50515,-11.3478	0/1:8:7,1:7:248:1:36:-0.412841,0,-13.3382	0/0:156:156,0:156:5503:0:0:0,-46.9607,-413.214	0/0:75:75,0:75:2656:0:0:0,-22.5772,-177.021	0/0:15:15,0:15:532:0:0:0,-4.51545,-32.6858	1/1:1:0,1:0:0:1:36:-2.98075,-0.30103,0	0/1:64:36,28:36:1276:28:996:-52.6126,0,-66.0005	0/1:12:6,6:6:212:6:216:-12.7103,0,-10.8929	0/1:41:25,16:25:888:16:559:-30.0083,0,-47.5187	0/1:31:14,17:14:500:17:608:-38.5488,0,-26.251	0/0:42:42,0:42:1466:0:0:0,-12.6433,-105.462	0/0:84:84,0:84:2996:0:0:0,-25.2865,-222.634	0/0:35:35,0:35:1256:0:0:0,-10.536,-78.2517	0/1:96:59,37:59:2066:37:1319:-74.7291,0,-116.54	0/0:97:97,0:97:3423:0:0:0,-29.1999,-243.909	0/0:60:60,0:60:2131:0:0:0,-18.0618,-152.5	0/0:120:120,0:120:4226:0:0:0,-36.1236,-311.894	0/0:1:1,0:1:21:0:0:0,-0.30103,-2.03658	0/0:69:69,0:69:2447:0:0:0,-20.7711,-153.681	0/0:41:40,1:40:1413:1:36:0,-10.3529,-104.082	1/1:1:0,1:0:0:1:36:-2.82108,-0.30103,0	0/1:93:40,53:40:1402:53:1904:-114.219,0,-65.7831	0/0:39:39,0:39:1376:0:0:0,-11.7402,-97.6615	0/1:6:2,4:2:68:4:144:-10.2046,0,-3.72947	0/1:8:3,5:3:108:5:180:-12.8191,0,-5.93787	0/0:40:40,0:40:1420:0:0:0,-12.0412,-95.3936	0/1:62:28,34:28:979:34:1216:-76.3184,0,-50.7283	1/1:1:0,1:0:0:1:36:-3.12364,-0.30103,0	0/1:194:108,86:108:3812:86:3047:-187.011,0,-227.658	0/1:110:69,41:69:2444:41:1472:-80.9366,0,-145.544	0/1:47:25,22:25:888:22:788:-45.0469,0,-45.6822	0/1:38:29,9:29:1019:9:315:-13.7002,0,-62.0694	0/0:113:112,1:112:3952:1:36:0,-30.8928,-277.244	0/1:75:27,48:27:942:48:1724:-110.16,0,-44.536	0/1:9:5,4:5:167:4:144:-7.31198,0,-9.18272	0/1:31:13,18:13:460:18:639:-35.859,0,-19.6946	0/1:33:16,17:16:564:17:608:-39.8553,0,-33.2412	0/1:20:14,6:14:500:6:216:-11.1594,0,-29.7188	0/0:90:90,0:90:3159:0:0:0,-27.0927,-198.849	0/0:95:95,0:95:3340:0:0:0,-28.5978,-210.435	0/0:79:79,0:79:2796:0:0:0,-23.7814,-184.972	0/0:129:129,0:129:4556:0:0:0,-38.8329,-324.977	0/1:19:11,8:11:392:8:288:-14.7169,0,-18.0259	0/0:60:60,0:60:2121:0:0:0,-18.0618,-135.023	0/1:16:6,10:6:216:10:360:-20.1224,0,-8.7515	0/0:65:64,1:64:2264:1:36:0,-16.5862,-146.8	0/1:56:24,32:24:856:32:1136:-62.2078,0,-35.7143	0/0:144:144,0:144:5099:0:0:0,-43.3483,-359.928	0/0:42:42,0:42:1495:0:0:0,-12.6433,-104.782	0/1:45:27,18:27:963:18:648:-36.4298,0,-57.8702	0/0:27:27,0:27:948:0:0:0,-8.12781,-67.9746	0/1:83:41,42:41:1456:42:1495:-90.1944,0,-80.8609	0/1:18:9,9:9:320:9:324:-17.5543,0,-13.8977	0/0:48:48,0:48:1675:0:0:0,-14.4494,-104.703	0/0:59:59,0:59:2088:0:0:0,-17.7608,-128.487	0/0:8:8,0:8:275:0:0:0,-2.40824,-19.0456	0/1:38:26,11:26:914:11:396:-17.382,0,-51.1538	0/1:50:19,31:19:671:31:1095:-71.4592,0,-34.5242	0/0:142:142,0:142:5021:0:0:0,-42.7463,-360.496	0/0:72:71,0:71:2536:0:0:0,-21.3731,-178.88
chr05	13825645	.	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chr05	13830795	.	C	T	1.54138e-11	PASS	AB=0.506874;ABP=8.0554;AC=92;AF=0.489362;AN=188;AO=6438;CIGAR=1X;DP=13070;DPB=13070;DPRA=46.8351;EPP=13982.9;EPPR=14367.3;GTI=86;LEN=1;MEANALT=1.08602;MQM=11.125;MQMR=40.7018;NS=94;NUMALT=1;ODDS=31.9635;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229929;QR=235909;RO=6623;RPL=0;RPP=13982.9;RPPR=14367.3;RPR=6438;RUN=1;SAF=6438;SAP=13982.9;SAR=0;SRF=6623;SRP=14384.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:16,52:16:572:52:1845:-34.6779,0,-29.2692	0/1:169:117,52:117:4165:52:1842:-0.886055,0,-311.655	0/1:192:64,128:64:2271:128:4584:-71.069,0,-140.705	0/1:361:250,111:250:8904:111:3934:-4.99479,0,-661.622	0/1:79:49,30:49:1733:30:1076:-5.9927,0,-127.662	0/1:50:26,24:26:928:24:864:-10.0338,0,-66.1322	0/1:122:45,77:45:1608:77:2765:-39.0738,0,-102.544	0/0:198:148,50:148:5240:50:1792:0,-9.69478,-407.053	0/1:105:24,81:24:848:81:2865:-48.8202,0,-42.827	0/1:144:65,79:65:2320:79:2832:-34.5172,0,-157.885	0/1:69:47,22:47:1680:22:788:-1.09209,0,-124.465	0/1:115:51,64:51:1798:64:2284:-29.7573,0,-122.374	0/1:92:35,57:35:1256:57:2036:-29.0431,0,-82.0484	0/1:74:30,44:30:1067:44:1576:-21.6099,0,-71.117	0/1:121:70,51:70:2482:51:1836:-14.9973,0,-178.531	0/1:89:48,41:48:1716:41:1468:-13.8576,0,-122.774	0/0:72:51,21:51:1815:21:756:0,-0.617834,-134.934	0/1:115:67,48:67:2396:48:1716:-13.129,0,-174.689	0/1:78:50,28:50:1775:28:984:-4.27641,0,-131.226	0/1:342:151,191:151:5404:191:6816:-84.9825,0,-363.695	0/1:260:139,121:139:4933:121:4336:-41.9333,0,-351.579	0/1:96:13,83:13:464:83:2961:-53.942,0,-11.7057	0/1:82:27,55:27:968:55:1954:-32.0307,0,-59.257	0/1:96:31,65:31:1108:65:2301:-36.9438,0,-67.3823	0/1:106:53,53:53:1884:53:1887:-20.508,0,-132.628	0/1:403:258,145:258:9217:145:5179:-21.889,0,-674.358	0/1:284:85,199:85:3005:199:7117:-113.447,0,-174.718	0/1:64:29,35:29:1032:35:1260:-15.4542,0,-70.7611	0/1:349:145,204:145:5188:204:7261:-99.7729,0,-343.342	0/1:106:23,83:23:820:83:2958:-50.3532,0,-39.8471	0/1:135:92,43:92:3273:43:1532:-1.98511,0,-242.189	0/1:7:4,3:4:144:3:108:-0.969255,0,-10.7714	0/1:6:3,3:3:108:3:104:-1.26851,0,-6.90641	1/1:3:0,3:0:0:3:108:-3.07647,-0.90309,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.74595	0/1:6:1,5:1:36:5:180:-3.43136,0,-1.17457	0/1:356:211,144:211:7542:144:5145:-34.5241,0,-543.793	0/1:180:124,56:124:4411:56:2008:-1.20749,0,-329.019	0/1:69:45,23:45:1582:23:820:-4.66806,0,-117.485	0/0:5:4,1:4:136:1:36:0,-0.406412,-11.1653	0/1:533:177,356:177:6296:356:12754:-192.957,0,-387.621	0/1:49:17,32:17:612:32:1144:-16.9995,0,-38.9113	0/1:190:75,115:75:2696:115:4112:-56.4419,0,-177.342	0/1:110:40,70:40:1431:70:2507:-35.7622,0,-90.8878	0/1:144:79,65:79:2791:65:2310:-20.7403,0,-198.285	0/1:131:55,76:55:1956:76:2713:-35.0052,0,-130.36	0/1:181:123,58:123:4384:58:2088:-3.24711,0,-327.278	0/1:196:85,111:85:3028:111:3958:-50.2206,0,-203.375	0/1:155:87,68:87:3087:68:2412:-20.4741,0,-218.466	0/0:214:157,57:157:5608:57:2048:0,-8.57609,-429.182	0/0:155:124,31:124:4396:31:1108:0,-15.8984,-349.196	1/1:1:0,1:0:0:1:36:-1.09874,-0.30103,0	0/1:452:310,141:310:11042:141:5060:-5.18303,0,-824.865	0/1:40:19,21:19:680:21:752:-8.83309,0,-47.051	0/1:8:1,7:1:36:7:252:-4.71478,0,-1.07246	0/1:204:79,125:79:2812:125:4467:-62.4723,0,-183.815	0/1:83:37,46:37:1316:46:1652:-20.6103,0,-89.4712	1/1:3:0,3:0:0:3:108:-3.07647,-0.90309,0	0/1:8:3,5:3:108:5:180:-2.64595,0,-7.26433	0/1:119:59,60:59:2091:60:2135:-23.5077,0,-146.753	0/1:157:59,98:59:2108:98:3508:-48.8505,0,-135.264	1/1:1:0,1:0:0:1:36:-1.09874,-0.30103,0	0/1:238:98,140:98:3492:140:4993:-65.9557,0,-229.704	0/1:180:74,106:74:2638:106:3786:-50.5367,0,-173.154	0/1:81:26,55:26:920:55:1976:-30.0223,0,-56.2769	0/1:120:40,79:40:1420:79:2809:-41.6681,0,-84.9563	0/1:169:86,83:86:3060:83:2976:-31.0368,0,-213.732	0/1:101:30,71:30:1076:71:2544:-39.4609,0,-61.3073	0/1:19:9,10:9:311:10:360:-4.27894,0,-21.6967	0/1:144:36,108:36:1284:108:3832:-66.5629,0,-68.2483	0/1:86:34,52:34:1206:52:1849:-25.6056,0,-78.6427	0/1:18:9,9:9:320:9:312:-3.31373,0,-22.614	0/1:193:90,103:90:3204:103:3652:-45.6926,0,-221.136	0/1:127:51,75:51:1811:75:2659:-39.2583,0,-119.815	0/1:182:118,63:118:4199:63:2260:-7.81693,0,-310.858	0/1:319:186,133:186:6629:133:4757:-34.9509,0,-477.059	0/1:65:14,51:14:496:51:1824:-33.7188,0,-24.0352	0/1:206:116,88:116:4164:88:3125:-29.4081,0,-297.802	1/1:7:0,7:0:0:7:252:-7.03192,-2.10721,0	0/1:234:138,96:138:4915:96:3405:-24.4561,0,-357.39	0/1:163:57,106:57:2036:106:3794:-57.6226,0,-129.006	0/1:396:269,127:269:9632:127:4556:-6.56931,0,-713.092	0/1:169:113,56:113:4022:56:1998:-6.0514,0,-296.648	0/1:97:38,59:38:1348:59:2116:-28.7999,0,-87.6533	0/0:115:83,32:83:2958:32:1152:0,-2.865,-224.585	0/1:166:56,110:56:1987:110:3948:-60.5322,0,-122.74	0/1:66:25,41:25:900:41:1472:-21.0533,0,-58.902	0/1:140:83,57:83:2941:57:2030:-16.1127,0,-214.26	0/1:159:95,64:95:3386:64:2276:-15.9603,0,-247.514	0/1:48:29,19:29:1031:19:684:-4.44885,0,-75.9365	0/1:81:25,56:25:896:56:1994:-32.0182,0,-53.8813	0/1:102:35,67:35:1239:67:2392:-35.4704,0,-77.0241	0/1:249:162,87:162:5784:87:3100:-10.7102,0,-423.624	0/1:224:118,106:118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chr05	13980344	.	G	A	149323	PASS	AB=0.503416;ABP=3.42573;AC=140;AF=0.752688;AN=186;AO=7023;CIGAR=1X;DP=9069;DPB=9069;DPRA=98.5652;EPP=14925;EPPR=4267.31;GTI=3;LEN=1;MEANALT=1.03261;MQM=47.6699;MQMR=59.3896;NS=93;NUMALT=1;ODDS=0.43464;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251066;QR=73123;RO=2043;RPL=6986;RPP=14933.6;RPPR=4267.31;RPR=37;RUN=1;SAF=7022;SAP=15244.6;SAR=1;SRF=2043;SRP=4439.33;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:36,41:36:1258:41:1468:-108.562,0,-90.339	1/1:71:0,71:0:0:71:2529:-226.664,-21.3731,0	0/1:116:62,54:62:2224:54:1944:-138.731,0,-165.4	1/1:223:0,223:0:0:223:7967:-709.229,-67.1297,0	1/1:43:1,42:1:36:42:1493:-129.653,-9.34602,0	1/1:23:0,23:0:0:23:824:-74.0783,-6.92369,0	0/1:86:34,52:34:1209:52:1872:-141.407,0,-83.2256	1/1:129:0,129:0:0:129:4616:-412.764,-38.8329,0	0/1:152:74,78:74:2648:78:2792:-203.508,0,-192.785	1/1:128:0,128:0:0:128:4604:-410.013,-38.5318,0	1/1:86:1,85:1:36:85:3021:-265.503,-22.2903,0	0/1:128:65,63:65:2331:63:2253:-161.056,0,-171.445	0/1:71:33,38:33:1184:38:1345:-99.3578,0,-85.46	0/1:81:31,50:31:1112:50:1800:-136.842,0,-75.9406	1/1:109:0,109:0:0:109:3910:-348.971,-32.8123,0	1/1:62:0,62:0:0:62:2224:-199.084,-18.6639,0	1/1:37:0,36:0:0:36:1273:-113.016,-10.8371,0	1/1:34:0,34:0:0:34:1201:-107.522,-10.235,0	1/1:34:0,34:0:0:34:1212:-108.546,-10.235,0	0/1:159:85,74:85:3048:74:2652:-189.04,0,-226.543	1/1:249:1,248:1:36:248:8856:-786.946,-71.3582,0	0/1:36:21,14:21:756:14:504:-34.5564,0,-57.4594	0/1:155:75,80:75:2681:80:2827:-205.544,0,-194.788	0/1:159:63,96:63:2264:96:3433:-257.809,0,-156.078	1/1:55:0,55:0:0:55:1972:-173.304,-16.5567,0	1/1:425:0,425:0:0:425:15184:-1354.2,-127.938,0	0/1:217:90,127:90:3232:127:4530:-338.824,0,-225.627	0/1:47:21,26:21:756:26:936:-69.5816,0,-54.2188	0/1:155:73,82:73:2596:82:2944:-215.078,0,-187.122	0/1:115:61,54:61:2188:54:1920:-136.037,0,-162.545	1/1:120:0,120:0:0:120:4300:-382.832,-36.1236,0	0/1:5:3,2:3:108:2:72:-5.28437,0,-8.57002	1/1:7:0,7:0:0:7:237:-21.5221,-2.10721,0	0/1:7:2,5:2:72:5:176:-13.9988,0,-4.69184	1/1:5:0,5:0:0:5:180:-16.4623,-1.50515,0	0/1:6:2,4:2:72:4:129:-10.0668,0,-5.03054	1/1:216:0,216:0:0:216:7745:-692.169,-65.0225,0	1/1:97:0,97:0:0:97:3471:-309.958,-29.1999,0	1/1:46:0,46:0:0:46:1644:-146.462,-13.8474,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:90:47,43:47:1676:43:1540:-109.337,0,-123.993	0/1:33:18,15:18:633:15:540:-38.3746,0,-47.3534	0/1:157:69,88:69:2461:88:3113:-229.427,0,-174.353	0/1:82:45,37:45:1616:37:1320:-93.2179,0,-120.989	1/1:70:1,69:1:36:69:2465:-216.306,-17.4738,0	1/1:93:0,93:0:0:93:3332:-296.993,-27.9958,0	1/1:95:0,95:0:0:95:3390:-302.189,-28.5979,0	0/1:181:96,85:96:3427:85:3060:-217.493,0,-253.567	1/1:58:0,58:0:0:58:2058:-183.533,-17.4597,0	1/1:125:0,125:0:0:125:4492:-400.974,-37.6288,0	1/1:194:0,194:0:0:194:6945:-619.083,-58.3998,0	0/1:5:1,4:1:36:4:144:-11.3413,0,-2.09312	1/1:89:0,89:0:0:89:3162:-283.323,-26.7917,0	1/1:78:0,78:0:0:78:2770:-247.178,-23.4803,0	.:.:.:.:.:.:.:.	0/1:155:78,77:78:2804:77:2752:-197.469,0,-205.917	1/1:69:0,69:0:0:69:2459:-218.563,-20.7711,0	1/1:3:0,3:0:0:3:108:-10.0205,-0.90309,0	0/1:13:8,5:8:288:5:170:-11.0795,0,-22.354	1/1:80:0,80:0:0:80:2863:-255.442,-24.0824,0	0/1:109:67,42:67:2399:42:1508:-102.092,0,-183.326	1/1:1:0,1:0:0:1:36:-3.56681,-0.30103,0	0/1:182:80,102:80:2872:102:3629:-269.2,0,-203.777	0/1:235:107,128:107:3848:128:4531:-332.166,0,-275.553	0/1:85:37,48:37:1332:48:1724:-127.992,0,-94.5527	0/1:69:30,39:30:1064:39:1395:-103.479,0,-75.3006	1/1:199:0,199:0:0:199:7121:-634.802,-59.905,0	0/1:127:97,30:97:3466:30:1079:-58.1036,0,-273.708	0/1:38:14,24:14:504:24:855:-65.216,0,-34.259	0/1:80:43,37:43:1544:37:1313:-93.778,0,-114.853	0/1:49:18,31:18:644:31:1112:-84.5167,0,-43.5225	0/1:27:19,8:19:684:8:280:-16.8723,0,-53.7625	1/1:142:0,142:0:0:142:5100:-455.211,-42.7463,0	1/1:63:0,63:0:0:63:2245:-201.215,-18.9649,0	1/1:261:1,260:1:36:260:9346:-830.202,-74.9954,0	1/1:159:0,158:0:0:158:5604:-498.448,-47.5627,0	0/1:42:13,29:13:464:29:1044:-81.1204,0,-29.4542	1/1:48:0,48:0:0:48:1720:-153.823,-14.4494,0	0/1:8:5,3:5:180:3:108:-7.61231,0,-14.1438	1/1:56:0,56:0:0:56:2012:-179.85,-16.8577,0	0/1:51:31,20:31:1112:20:716:-49.0742,0,-85.0036	1/1:232:1,231:1:36:231:8280:-733.954,-66.2407,0	1/1:79:2,77:2:68:77:2756:-239.103,-17.3237,0	0/1:89:49,40:49:1749:40:1440:-100.625,0,-130.836	1/1:72:0,72:0:0:72:2573:-228.907,-21.6742,0	0/1:162:84,78:84:3003:78:2808:-201.056,0,-221.621	0/1:31:17,14:17:608:14:504:-36.1299,0,-45.7201	1/1:83:0,83:0:0:83:2976:-265.297,-24.9855,0	1/1:78:0,78:0:0:78:2786:-249.379,-23.4803,0	1/1:54:0,54:0:0:54:1929:-171.427,-16.2556,0	0/1:114:61,53:61:2175:53:1881:-133.94,0,-161.247	0/1:112:69,43:69:2475:43:1544:-104.38,0,-189.231	1/1:140:0,140:0:0:140:5013:-447.047,-42.1442,0	1/1:150:0,150:0:0:150:5355:-477.749,-45.1545,0
chr05	13984482	.	AGT	GGT,GGC	121695	PASS	AB=0.509106,0.488776;ABP=4.71087,5.59381;AC=143,43;AF=0.768817,0.231183;AN=186;AO=4463,1174;CIGAR=1X2M,1X1M1X;DP=5647;DPB=5647;DPRA=4.7107,0.953067;EPP=9694.29,2552.32;EPPR=5.18177;GTI=2;LEN=1,3;MEANALT=1.57609,2.06383;MQM=56.914,59.6951;MQMR=60;NS=93;NUMALT=2;ODDS=0.974815;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=159322,41299;QR=36;RO=1;RPL=0,0;RPP=9694.29,2552.32;RPPR=5.18177;RPR=4463,1174;RUN=1,1;SAF=4463,1174;SAP=9694.29,2552.32;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	2/2:13:0,0,13:0:0:0,13:0,445:-40.3759,-40.3759,-40.3759,-3.91339,-3.91339,0	1/1:88:0,87,0:0:0:87,0:3099,0:-278.778,-26.1896,0,-278.778,-26.1896,-278.778	1/2:34:0,20,14:0:0:20,14:716,499:-99.4217,-41.0315,-35.0109,-58.7471,0,-54.5327	1/1:71:0,71,0:0:0:71,0:2537,0:-228.318,-21.3731,0,-228.318,-21.3731,-228.318	1/1:41:0,41,0:0:0:41,0:1476,0:-132.989,-12.3422,0,-132.989,-12.3422,-132.989	1/1:50:0,50,0:0:0:50,0:1769,0:-159.491,-15.0515,0,-159.491,-15.0515,-159.491	1/2:61:0,34,27:0:0:34,27:1220,929:-175.234,-75.7865,-65.5515,-99.7975,0,-91.6696	1/1:108:0,108,0:0:0:108,0:3827,0:-344.625,-32.5112,0,-344.625,-32.5112,-344.625	1/2:47:0,28,19:0:0:28,19:993,649:-133.898,-52.9911,-44.5623,-81.2537,0,-75.5341	1/1:62:0,62,0:0:0:62,0:2205,0:-198.418,-18.6639,0,-198.418,-18.6639,-198.418	1/1:73:0,72,1:0:0:72,1:2563,36:-230.336,-21.6742,0,-227.398,-18.3769,-227.097	1/2:105:0,44,61:0:0:44,61:1561,2152:-302.758,-175.577,-162.332,-127.534,0,-109.172	1/2:90:0,46,43:0:0:46,43:1643,1509:-256.827,-122.869,-109.022,-134.029,0,-121.085	1/2:106:0,50,56:0:0:50,56:1781,1977:-306.265,-161.338,-146.287,-145.281,0,-128.423	1/1:76:1,75,0:1:36:75,0:2696,0:-239.109,-19.28,0,-239.41,-22.5773,-242.347	1/1:67:0,67,0:0:0:67,0:2404,0:-216.095,-20.169,0,-216.095,-20.169,-216.095	1/1:113:0,113,0:0:0:113,0:4048,0:-364.503,-34.0164,0,-364.503,-34.0164,-364.503	1/1:68:0,68,0:0:0:68,0:2431,0:-219.045,-20.47,0,-219.045,-20.47,-219.045	1/1:73:0,73,0:0:0:73,0:2616,0:-235.688,-21.9752,0,-235.688,-21.9752,-235.688	1/2:63:0,31,32:0:0:31,32:1116,1101:-180.435,-89.7455,-80.4136,-91.0409,0,-81.4079	1/1:43:0,42,1:0:0:42,1:1489,36:-133.884,-12.6433,0,-130.946,-9.34602,-130.645	1/2:15:0,9,6:0:0:9,6:324,201:-42.9308,-16.6126,-13.9033,-26.6624,0,-24.8563	1/2:34:0,22,12:0:0:22,12:788,430:-99.644,-35.4277,-28.8051,-64.5742,0,-60.9619	1/2:61:0,38,23:0:0:38,23:1356,819:-177.513,-67.1088,-55.6697,-110.761,0,-103.837	1/1:18:0,18,0:0:0:18,0:640,0:-57.3642,-5.41854,0,-57.3642,-5.41854,-57.3642	1/1:167:0,165,1:0:0:165,1:5901,36:-529.753,-49.67,0,-526.922,-46.8033,-526.621	1/2:64:0,33,31:0:0:33,31:1188,1081:-184.994,-88.2632,-78.3292,-97.0849,0,-87.753	1/2:50:0,22,28:0:0:22,28:788,989:-145.043,-80.8898,-74.2672,-64.5088,0,-56.0799	1/2:72:0,29,43:0:0:29,43:1029,1508:-206.798,-123.063,-114.333,-84.0881,0,-71.1438	1/2:43:0,25,18:0:0:25,18:888,643:-124.849,-52.7783,-45.2525,-72.4259,0,-67.0074	1/1:64:0,64,0:0:0:64,0:2296,0:-206.757,-19.2659,0,-206.757,-19.2659,-206.757	1/1:1:0,1,0:0:0:1,0:36,0:-3.59656,-0.30103,0,-3.59656,-0.30103,-3.59656	1/1:4:0,4,0:0:0:4,0:144,0:-13.3073,-1.20412,0,-13.3073,-1.20412,-13.3073	1/2:5:0,4,1:0:0:4,1:129,36:-13.6693,-3.29724,-2.09312,-10.7244,0,-10.4234	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	.:.:.:.:.:.:.:.	1/1:204:0,204,0:0:0:204,0:7301,0:-656.07,-61.4101,0,-656.07,-61.4101,-656.07	1/1:71:0,68,3:0:0:68,3:2428,105:-217.994,-20.47,0,-209.452,-11.5772,-208.549	1/1:79:0,79,0:0:0:79,0:2816,0:-253.677,-23.7814,0,-253.677,-23.7814,-253.677	1/1:1:0,1,0:0:0:1,0:36,0:-3.59656,-0.30103,0,-3.59656,-0.30103,-3.59656	1/2:45:0,23,22:0:0:23,22:828,774:-130.863,-63.3541,-56.4305,-67.8639,0,-61.2413	1/2:49:0,17,32:0:0:17,32:593,1121:-139.649,-91.5636,-86.4461,-48.4336,0,-38.8007	1/2:52:0,37,15:0:0:37,15:1309,540:-150.902,-44.4211,-33.283,-106.839,0,-102.324	1/2:131:0,53,78:0:0:53,78:1895,2752:-378.669,-224.432,-208.478,-154.592,0,-131.111	1/1:91:0,91,0:0:0:91,0:3237,0:-291.19,-27.3937,0,-291.19,-27.3937,-291.19	1/1:36:0,36,0:0:0:36,0:1280,0:-115.316,-10.8371,0,-115.316,-10.8371,-115.316	1/1:81:0,81,0:0:0:81,0:2904,0:-261.589,-24.3834,0,-261.589,-24.3834,-261.589	1/2:64:0,33,31:0:0:33,31:1180,1085:-184.579,-88.6243,-78.6903,-96.3079,0,-86.9759	1/1:58:0,57,1:0:0:57,1:2010,36:-180.689,-17.1587,0,-177.752,-13.8615,-177.451	1/1:89:0,89,0:0:0:89,0:3185,0:-286.258,-26.7917,0,-286.258,-26.7917,-286.258	1/1:65:0,65,0:0:0:65,0:2313,0:-207.928,-19.567,0,-207.928,-19.567,-207.928	1/2:6:0,3,3:0:0:3,3:108,106:-17.7944,-8.98601,-8.08292,-9.16481,0,-8.26172	1/1:59:0,59,0:0:0:59,0:2112,0:-190.349,-17.7608,0,-190.349,-17.7608,-190.349	1/1:25:0,25,0:0:0:25,0:891,0:-80.3975,-7.52575,0,-80.3975,-7.52575,-80.3975	1/2:8:0,3,5:0:0:3,5:104,176:-23.1313,-14.6801,-13.777,-8.79971,0,-7.29456	1/2:54:0,35,19:0:0:35,19:1233,670:-155.245,-54.9046,-44.3685,-100.693,0,-94.9735	1/1:21:0,21,0:0:0:21,0:748,0:-67.5121,-6.32163,0,-67.5121,-6.32163,-67.5121	1/1:5:0,5,0:0:0:5,0:180,0:-16.4302,-1.50515,0,-16.4302,-1.50515,-16.4302	1/2:5:0,2,3:0:0:2,3:72,90:-13.3862,-7.49424,-6.89218,-6.22762,0,-5.32453	1/1:32:0,32,0:0:0:32,0:1144,0:-103.224,-9.63296,0,-103.224,-9.63296,-103.224	1/2:127:0,56,71:0:0:56,71:2000,2517:-368.339,-205.398,-188.541,-163.296,0,-141.923	1/1:2:0,2,0:0:0:2,0:72,0:-6.83179,-0.60206,0,-6.83179,-0.60206,-6.83179	1/2:65:0,42,23:0:0:42,23:1508,798:-188.064,-65.2094,-52.5661,-123.205,0,-116.281	1/2:82:0,45,37:0:0:45,37:1608,1306:-237.671,-106.698,-93.1512,-131.328,0,-120.19	1/2:27:0,16,11:0:0:16,11:576,389:-78.9314,-32.037,-27.2205,-47.2502,0,-43.9389	1/2:34:0,21,13:0:0:21,13:752,461:-99.0119,-37.8258,-31.5041,-61.5412,0,-57.6278	1/1:89:0,89,0:0:0:89,0:3180,0:-285.582,-26.7917,0,-285.582,-26.7917,-285.582	1/2:40:0,19,21:0:0:19,21:684,732:-115.383,-59.6879,-53.9684,-56.0483,0,-49.7266	1/2:31:0,14,15:0:0:14,15:495,522:-82.695,-42.396,-38.1816,-40.2992,0,-35.7837	1/2:33:0,17,16:0:0:17,16:608,570:-96.3942,-46.8165,-41.699,-49.9345,0,-45.118	1/2:123:0,58,65:0:0:58,65:2055,2293:-353.972,-187.056,-169.596,-167.269,0,-147.702	1/2:7:0,1,6:0:0:1,6:36,216:-20.832,-17.8967,-17.5957,-3.29465,0,-1.48847	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/1:28:0,28,0:0:0:28,0:996,0:-89.9549,-8.42884,0,-89.9549,-8.42884,-89.9549	1/1:87:0,87,0:0:0:87,0:3077,0:-276.918,-26.1896,0,-276.918,-26.1896,-276.918	1/1:82:0,82,0:0:0:82,0:2933,0:-263.939,-24.6845,0,-263.939,-24.6845,-263.939	1/2:80:0,39,41:0:0:39,41:1400,1426:-230.467,-116.262,-104.522,-114.559,0,-102.217	1/1:98:0,97,0:0:0:97,0:3450,0:-310.351,-29.1999,0,-310.351,-29.1999,-310.351	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:63:0,62,0:0:0:62,0:2205,0:-198.001,-18.6639,0,-198.001,-18.6639,-198.001	1/2:23:0,16,7:0:0:16,7:576,242:-67.018,-20.0094,-15.1929,-47.3585,0,-45.2513	1/1:82:0,82,0:0:0:82,0:2936,0:-264.088,-24.6845,0,-264.088,-24.6845,-264.088	1/1:113:0,113,0:0:0:113,0:4052,0:-364.032,-34.0164,0,-364.032,-34.0164,-364.032	1/2:67:0,38,29:0:0:38,29:1357,1034:-195.104,-84.6439,-73.2048,-110.817,0,-102.087	1/1:114:0,114,0:0:0:114,0:4069,0:-365.337,-34.3174,0,-365.337,-34.3174,-365.337	1/2:141:0,80,61:0:0:80,61:2857,2175:-410.104,-177.654,-153.571,-232.807,0,-214.444	1/2:48:0,22,26:0:0:22,26:788,911:-138.745,-74.4775,-67.8549,-64.6221,0,-56.7954	1/1:62:0,62,0:0:0:62,0:2216,0:-199.704,-18.6639,0,-199.704,-18.6639,-199.704	1/1:70:0,70,0:0:0:70,0:2508,0:-225.972,-21.0721,0,-225.972,-21.0721,-225.972	1/1:58:0,58,0:0:0:58,0:2062,0:-185.249,-17.4597,0,-185.249,-17.4597,-185.249	1/2:89:0,49,40:0:0:49,40:1752,1420:-258.483,-116.052,-101.302,-142.786,0,-130.745	1/2:80:0,28,50:0:0:28,50:993,1756:-223.733,-142.893,-134.464,-80.8343,0,-65.7828	1/1:54:0,54,0:0:0:54,0:1944,0:-174.944,-16.2556,0,-174.944,-16.2556,-174.944	1/1:139:0,139,0:0:0:139,0:4969,0:-446.719,-41.8432,0,-446.719,-41.8432,-446.719
chr05	14309556	.	A	C	155992	PASS	AB=0.452713;ABP=103.228;AC=140;AF=0.744681;AN=188;AO=7441;CIGAR=1X;DP=10282;DPB=10282;DPRA=0;EPP=16160.9;EPPR=6159.13;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9801;MQMR=60;NS=94;NUMALT=1;ODDS=5.2284;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266232;QR=98052;RO=2835;RPL=0;RPP=16160.9;RPPR=6159.13;RPR=7441;RUN=1;SAF=7441;SAP=16160.9;SAR=0;SRF=2835;SRP=6159.13;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:32,16:32:1117:16:572:-37.364,0,-86.386	1/1:174:0,174:0:0:174:6223:-560.166,-52.3792,0	0/1:152:64,88:64:2246:88:3152:-238.149,0,-156.644	1/1:264:2,262:2:72:262:9385:-837.775,-72.6352,0	1/1:118:1,117:1:36:117:4172:-372.066,-31.9233,0	1/1:100:0,100:0:0:100:3580:-322.407,-30.103,0	0/1:173:80,93:80:2803:93:3340:-248.738,0,-200.43	1/1:128:0,128:0:0:128:4580:-412.365,-38.5318,0	0/1:73:32,41:32:1106:41:1476:-111.161,0,-77.8673	1/1:110:0,110:0:0:110:3940:-354.79,-33.1133,0	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	0/1:78:39,39:39:1366:39:1404:-103.179,0,-99.7541	0/1:62:32,30:32:1114:30:1072:-78.1286,0,-81.8993	0/1:82:41,40:41:1411:40:1405:-102.002,0,-102.537	1/1:43:0,43:0:0:43:1533:-138.262,-12.9443,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	1/1:70:0,70:0:0:70:2499:-225.162,-21.0721,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:298:141,157:141:4927:157:5624:-416.574,0,-353.874	1/1:163:1,162:1:32:162:5796:-518.555,-45.8686,0	0/1:118:89,29:89:3082:29:1021:-56.6787,0,-242.083	0/1:44:24,20:24:833:20:716:-51.5224,0,-62.0396	0/1:126:51,75:51:1801:75:2692:-204.508,0,-124.44	1/1:78:0,78:0:0:78:2784:-250.801,-23.4803,0	1/1:291:1,290:1:36:290:10382:-930.7,-84.0015,0	0/1:242:110,132:110:3746:132:4710:-351.19,0,-264.49	0/1:33:20,13:20:656:13:468:-32.5257,0,-49.4098	0/1:412:239,173:239:8384:173:6208:-434.79,0,-630.551	0/1:117:55,62:55:1911:62:2217:-164.573,0,-137.042	1/1:73:0,73:0:0:73:2593:-233.618,-21.9752,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:4:3,1:3:93:1:36:-2.39415,0,-7.47261	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:22:12,10:12:398:10:356:-25.7586,0,-29.5142	1/1:151:0,151:0:0:151:5412:-487.209,-45.4555,0	1/1:107:0,107:0:0:107:3833:-345.158,-32.2102,0	1/1:71:0,71:0:0:71:2510:-226.152,-21.3731,0	0/1:5:2,3:2:42:3:108:-8.57002,0,-2.48475	0/1:251:153,98:153:5108:98:3507:-240.282,0,-384.303	0/1:45:27,18:27:911:18:648:-45.1055,0,-68.7472	0/1:157:83,74:83:2893:74:2652:-191.664,0,-213.34	0/1:52:23,29:23:801:29:1040:-78.2608,0,-56.7531	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:112:0,112:0:0:112:3988:-359.112,-33.7154,0	1/1:148:0,148:0:0:148:5296:-476.775,-44.5524,0	0/1:205:114,91:114:3823:91:3244:-230.469,0,-282.553	1/1:110:0,110:0:0:110:3930:-353.893,-33.1133,0	1/1:187:0,185:0:0:185:6637:-597.045,-55.6906,0	1/1:235:2,233:2:72:233:8328:-742.693,-63.9053,0	0/1:19:15,4:15:517:4:144:-7.59405,0,-41.135	1/1:146:0,146:0:0:146:5209:-468.95,-43.9504,0	1/1:48:0,48:0:0:48:1711:-154.275,-14.4494,0	0/1:27:11,16:11:392:16:572:-43.6856,0,-27.4922	0/1:220:118,102:118:4057:102:3652:-261.721,0,-299.09	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:21:13,8:13:449:8:288:-19.9458,0,-34.4159	0/1:30:11,19:11:388:19:684:-52.8594,0,-26.2265	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:142:93,48:93:3271:48:1724:-112.64,0,-251.804	0/1:8:6,2:6:208:2:72:-4.42848,0,-16.6508	0/1:177:107,70:107:3733:70:2516:-173.409,0,-282.888	0/1:235:132,103:132:4622:103:3661:-258.952,0,-345.401	0/1:96:51,45:51:1734:45:1610:-116.291,0,-127.434	0/1:152:106,46:106:3701:46:1652:-103.212,0,-287.535	1/1:141:0,141:0:0:141:5049:-454.554,-42.4452,0	0/1:143:103,40:103:3575:40:1432:-86.1303,0,-278.907	0/1:36:23,13:23:779:13:468:-31.6226,0,-59.5812	0/1:112:56,56:56:1996:56:1989:-145.568,0,-146.199	0/1:82:48,34:48:1667:34:1220:-85.4223,0,-125.626	0/1:35:22,13:22:784:13:466:-31.7426,0,-60.3479	1/1:80:0,80:0:0:80:2864:-257.989,-24.0824,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	1/1:159:0,159:0:0:159:5668:-510.243,-47.8638,0	1/1:211:0,211:0:0:211:7564:-680.798,-63.5173,0	0/1:209:102,107:102:3459:107:3817:-280.81,0,-248.603	1/1:118:3,115:3:108:115:4113:-360.279,-25.4464,0	0/1:27:19,8:19:578:8:284:-17.7755,0,-44.1796	1/1:140:0,140:0:0:140:5009:-450.955,-42.1442,0	0/1:201:104,97:104:3591:97:3460:-251.106,0,-262.888	1/1:316:0,316:0:0:316:11305:-1016.96,-95.1255,0	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	0/1:66:31,35:31:1059:35:1252:-93.1171,0,-75.7427	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	0/1:98:53,45:53:1846:45:1604:-115.149,0,-136.915	0/1:33:17,16:17:597:16:576:-42.241,0,-44.1221	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:67:1,64:1:32:64:2284:-202.596,-16.7009,0	0/1:132:73,59:73:2536:59:2116:-150.973,0,-188.751	0/1:53:39,14:39:1373:14:504:-29.7435,0,-107.912	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:87:2,85:2:72:85:3044:-267.353,-19.3529,0
chr05	14652604	.	GATGC	GATGA,AATGA	131965	PASS	AB=0.470183,0.523613;ABP=25.4129,17.0594;AC=138,50;AF=0.734043,0.265957;AN=188;AO=4564,1541;CIGAR=4M1X,1X3M1X;DP=6138;DPB=6138;DPRA=15.5325,1.0353;EPP=9732.05,3305.96;EPPR=5.18177;GTI=1;LEN=1,5;MEANALT=1.87912,2.24074;MQM=59.729,59.4971;MQMR=60;NS=94;NUMALT=2;ODDS=2.42354;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=163224,53794;QR=36;RO=1;RPL=21,5;RPP=9732.05,3305.96;RPPR=5.18177;RPR=4543,1536;RUN=1,1;SAF=0,0;SAP=9913.61,3349.25;SAR=4564,1541;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,26,27:0:0:26,27:936,948:-153.879,-77.5018,-69.6751,-76.7327,0,-68.6049	1/1:46:0,44,2:0:0:44,2:1567,67:-140.898,-13.2453,0,-135.473,-7.48454,-134.871	1/2:99:0,52,46:0:0:52,46:1860,1592:-281.126,-129.452,-113.798,-151.764,0,-137.917	1/1:158:0,157,0:0:0:157,0:5616,0:-504.592,-47.2617,0,-504.592,-47.2617,-504.592	1/1:57:0,56,1:0:0:56,1:1999,36:-179.303,-16.8577,0,-176.367,-13.5621,-176.066	1/1:59:0,59,0:0:0:59,0:2108,0:-189.988,-17.7608,0,-189.988,-17.7608,-189.988	1/2:61:0,28,30:0:0:28,30:1008,1051:-167.755,-85.5058,-77.077,-82.2453,0,-73.2144	1/1:170:0,167,0:0:0:167,0:5974,0:-537.44,-50.272,0,-537.44,-50.272,-537.44	1/2:78:0,42,36:0:0:42,36:1512,1258:-226.02,-102.648,-90.0044,-123.727,0,-112.89	1/1:57:0,57,0:0:0:57,0:2052,0:-184.865,-17.1587,0,-184.865,-17.1587,-184.865	1/1:29:0,29,0:0:0:29,0:1027,0:-92.7339,-8.72987,0,-92.7339,-8.72987,-92.7339	1/2:71:0,38,33:0:0:38,33:1360,1156:-205.319,-94.4117,-82.9725,-111.261,0,-101.327	1/2:40:0,18,22:0:0:18,22:648,754:-114.398,-61.5524,-56.1339,-53.1974,0,-46.5748	1/2:25:0,12,13:0:0:12,13:432,446:-71.7912,-36.534,-32.9217,-35.6088,0,-31.6954	1/1:40:0,40,0:0:0:40,0:1428,0:-128.818,-12.0412,0,-128.818,-12.0412,-128.818	1/1:33:0,33,0:0:0:33,0:1171,0:-105.695,-9.93399,0,-105.695,-9.93399,-105.695	1/1:18:0,18,0:0:0:18,0:648,0:-58.651,-5.41854,0,-58.651,-5.41854,-58.651	1/1:17:0,17,0:0:0:17,0:595,0:-53.8758,-5.11751,0,-53.8758,-5.11751,-53.8758	1/1:14:0,14,0:0:0:14,0:496,0:-44.9733,-4.21442,0,-44.9733,-4.21442,-44.9733	1/2:135:0,50,85:0:0:50,85:1792,2971:-388.184,-242.033,-226.981,-146.506,0,-120.919	1/1:124:0,123,0:0:0:123,0:4416,0:-397.387,-37.0267,0,-397.387,-37.0267,-397.387	1/2:112:0,25,87:0:0:25,87:883,2998:-315.698,-243.795,-236.27,-72.2537,0,-46.0641	1/2:133:0,61,71:0:0:61,71:2192,2504:-382.036,-203.241,-184.878,-178.791,0,-157.418	1/2:31:0,15,15:0:0:15,15:540,526:-86.9365,-42.8686,-38.3531,-44.1362,0,-39.6207	1/1:66:0,64,1:0:0:64,1:2287,27:-205.742,-19.2659,0,-203.614,-17.1269,-203.313	1/1:176:0,175,0:0:0:175,0:6259,0:-562.979,-52.6803,0,-562.979,-52.6803,-562.979	1/2:109:0,46,62:0:0:46,62:1635,2176:-310.235,-177.001,-163.154,-133.276,0,-114.612	1/2:19:0,12,7:0:0:12,7:432,232:-54.3637,-19.0966,-15.4843,-35.6088,0,-33.5016	1/2:197:0,91,106:0:0:91,106:3268,3720:-569.463,-302.991,-275.597,-266.827,0,-234.918	1/2:109:0,51,58:0:0:51,58:1823,2012:-312.461,-163.817,-148.465,-148.995,0,-131.536	1/1:81:0,81,0:0:0:81,0:2908,0:-261.915,-24.3834,0,-261.915,-24.3834,-261.915	2/2:6:0,0,6:0:0:0,6:0,215:-19.6992,-19.6992,-19.6992,-1.80618,-1.80618,0	1/1:15:0,15,0:0:0:15,0:540,0:-48.935,-4.51545,0,-48.935,-4.51545,-48.935	2/2:5:0,0,5:0:0:0,5:0,162:-14.8993,-14.8993,-14.8993,-1.50515,-1.50515,0	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:12:0,5,6:0:0:5,6:171,215:-31.4049,-17.5334,-16.0282,-13.8635,0,-12.0573	1/1:114:0,114,0:0:0:114,0:4087,0:-368.013,-34.3174,0,-368.013,-34.3174,-368.013	1/1:143:0,141,1:0:0:141,1:5038,36:-452.584,-42.4452,0,-449.648,-39.4695,-449.347	1/1:17:0,17,0:0:0:17,0:597,0:-54.0543,-5.11751,0,-54.0543,-5.11751,-54.0543	2/2:2:0,0,2:0:0:0,2:0,71:-6.74206,-6.74206,-6.74206,-0.60206,-0.60206,0	1/2:104:0,57,47:0:0:57,47:2044,1646:-300.862,-134.144,-116.985,-167.072,0,-152.924	1/2:9:0,6,3:0:0:6,3:216,105:-26.5232,-8.89199,-7.08581,-17.9843,0,-17.0812	1/2:185:0,112,72:0:0:112,72:4001,2500:-529.407,-203.258,-169.543,-326.24,0,-304.566	1/2:24:0,15,9:0:0:15,9:536,317:-69.8636,-26.1582,-21.6427,-44.0594,0,-41.3501	1/1:25:0,25,0:0:0:25,0:887,0:-80.1472,-7.52575,0,-80.1472,-7.52575,-80.1472	1/1:127:0,126,0:0:0:126,0:4515,0:-406.324,-37.9298,0,-406.324,-37.9298,-406.324	1/1:94:0,93,0:0:0:93,0:3316,0:-298.28,-27.9958,0,-298.28,-27.9958,-298.28	1/2:147:0,78,68:0:0:78,68:2787,2376:-420.622,-193.391,-169.911,-227.352,0,-206.882	1/1:81:0,79,0:0:0:79,0:2823,0:-253.996,-23.7814,0,-253.996,-23.7814,-253.996	1/1:47:0,46,0:0:0:46,0:1656,0:-149.023,-13.8474,0,-149.023,-13.8474,-149.023	1/1:66:0,66,0:0:0:66,0:2348,0:-211.549,-19.868,0,-211.549,-19.868,-211.549	1/2:5:0,1,4:0:0:1,4:36,143:-14.9552,-12.0173,-11.7163,-3.29724,0,-2.09312	1/1:78:0,78,0:0:0:78,0:2793,0:-251.539,-23.4803,0,-251.539,-23.4803,-251.539	1/1:44:0,44,0:0:0:44,0:1576,0:-142.117,-13.2453,0,-142.117,-13.2453,-142.117	1/2:4:0,3,1:0:0:3,1:108,31:-11.6481,-2.79842,-1.89533,-9.17208,0,-8.87105	1/2:110:0,56,54:0:0:56,54:2003,1897:-318.075,-154.747,-137.889,-163.683,0,-147.427	1/1:42:0,42,0:0:0:42,0:1496,0:-134.93,-12.6433,0,-134.93,-12.6433,-134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chr05	14652628	.	C	T	95922.2	PASS	AB=0.479342;ABP=13.597;AC=138;AF=0.734043;AN=188;AO=4566;CIGAR=1X;DP=6079;DPB=6079;DPRA=15.3829;EPP=9917.95;EPPR=3253.76;GTI=1;LEN=1;MEANALT=1.03297;MQM=59.7628;MQMR=59.6156;NS=94;NUMALT=1;ODDS=2.65227;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162963;QR=53789;RO=1509;RPL=4566;RPP=9917.95;RPPR=3253.76;RPR=0;RUN=1;SAF=0;SAP=9917.95;SAR=4566;SRF=0;SRP=3279.76;SRR=1509;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:25,26:25:896:26:928:-68.4857,0,-65.6056	1/1:45:2,43:2:72:43:1540:-131.969,-6.70963,0	0/1:99:46,53:46:1624:53:1876:-139.314,0,-116.575	1/1:160:0,160:0:0:160:5670:-509.659,-48.1648,0	1/1:56:1,55:1:36:55:1954:-172.509,-13.2611,0	1/1:59:0,59:0:0:59:2116:-190.708,-17.7608,0	0/1:59:32,27:32:1148:27:968:-69.6742,0,-85.8642	1/1:169:0,169:0:0:169:6003:-540.369,-50.8741,0	0/1:78:36,42:36:1280:42:1489:-110.821,0,-91.8652	1/1:58:0,58:0:0:58:2078:-187.234,-17.4597,0	1/1:29:0,29:0:0:29:1040:-93.8671,-8.72987,0	0/1:70:33,37:33:1188:37:1332:-99.1094,0,-86.1561	0/1:40:22,18:22:788:18:636:-45.5203,0,-59.2018	0/1:24:12,12:12:428:12:432:-31.9965,0,-31.6148	1/1:42:0,42:0:0:42:1496:-134.865,-12.6433,0	1/1:32:0,32:0:0:32:1152:-103.989,-9.63296,0	1/1:18:0,18:0:0:18:644:-58.2897,-5.41854,0	1/1:17:0,17:0:0:17:604:-54.6897,-5.11751,0	1/1:14:0,14:0:0:14:490:-44.4296,-4.21442,0	0/1:136:84,52:84:2993:52:1872:-127.814,0,-228.656	1/1:123:0,123:0:0:123:4384:-394.707,-37.0267,0	0/1:108:83,25:83:2942:25:888:-47.72,0,-232.457	0/1:129:68,59:68:2410:59:2090:-149.77,0,-178.556	0/1:31:15,16:15:540:16:572:-42.4799,0,-39.6015	1/1:63:1,62:1:36:62:2209:-195.431,-15.3666,0	1/1:173:0,173:0:0:173:6135:-552.203,-52.0782,0	0/1:110:61,49:61:2154:49:1746:-124.305,0,-160.901	0/1:17:6,11:6:216:11:392:-30.5025,0,-14.673	0/1:195:104,91:104:3704:91:3230:-232.209,0,-274.72	0/1:109:57,51:57:2052:51:1797:-129.137,0,-152.009	1/1:79:0,79:0:0:79:2830:-254.928,-23.7814,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:15:0,15:0:0:15:536:-48.5733,-4.51545,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:113:0,113:0:0:113:4048:-364.505,-34.0164,0	1/1:141:1,140:1:36:140:4999:-446.077,-38.8487,0	1/1:15:0,15:0:0:15:540:-48.9347,-4.51545,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:102:45,57:45:1608:57:2021:-151.454,0,-114.3	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3643	0/1:179:69,110:69:2456:110:3923:-299.286,0,-167.335	0/1:25:9,16:9:324:16:564:-43.5646,0,-21.9777	1/1:25:0,25:0:0:25:892:-80.5988,-7.52575,0	1/1:129:1,128:1:36:128:4580:-408.78,-35.2541,0	1/1:95:0,95:0:0:95:3405:-306.584,-28.5979,0	0/1:145:68,77:68:2436:77:2756:-204.628,0,-175.767	1/1:84:0,83:0:0:83:2961:-266.499,-24.9855,0	1/1:48:0,48:0:0:48:1724:-155.439,-14.4494,0	1/1:65:0,65:0:0:65:2289:-206.175,-19.567,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:81:0,81:0:0:81:2866:-258.157,-24.3834,0	1/1:41:0,41:0:0:41:1468:-132.413,-12.3422,0	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/1:104:52,52:52:1860:52:1856:-136.01,0,-136.366	1/1:42:0,42:0:0:42:1500:-135.291,-12.6433,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:86:0,86:0:0:86:3081:-277.448,-25.8886,0	0/1:61:27,34:27:968:34:1224:-92.1019,0,-69.0698	1/1:5:0,5:0:0:5:180:-16.5292,-1.50515,0	0/1:120:63,57:63:2244:57:2048:-148.241,0,-166.098	0/1:155:88,67:88:3130:67:2388:-168.509,0,-235.257	0/1:48:21,27:21:744:27:964:-72.6088,0,-52.8349	0/1:45:25,20:25:888:20:708:-50.493,0,-66.6903	1/1:145:1,144:1:32:144:5173:-462.491,-40.45,0	0/1:96:74,22:74:2625:22:790:-42.5121,0,-207.587	0/1:11:3,8:3:108:8:280:-22.2237,0,-6.76384	0/1:28:6,22:6:216:22:792:-63.1768,0,-11.3608	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7322	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1734	1/1:115:0,115:0:0:115:4120:-370.981,-34.6185,0	1/1:43:0,43:0:0:43:1528:-137.812,-12.9443,0	1/1:132:0,132:0:0:132:4713:-424.322,-39.736,0	1/1:119:1,118:1:36:118:4212:-375.675,-32.2558,0	0/1:115:62,53:62:2200:53:1896:-136.298,0,-163.634	1/1:49:0,49:0:0:49:1752:-157.963,-14.7505,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:60:0,60:0:0:60:2136:-192.507,-18.0618,0	0/1:94:51,43:51:1824:43:1536:-110.235,0,-136.139	1/1:156:2,154:2:72:154:5501:-488.349,-40.1264,0	1/1:44:0,44:0:0:44:1580:-142.463,-13.2453,0	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:80:33,47:33:1188:47:1688:-128.12,0,-83.1392	0/1:17:9,8:9:320:8:280:-20.4216,0,-24.0245	1/1:57:0,57:0:0:57:2048:-184.591,-17.1587,0	1/1:29:1,28:1:36:28:1008:-87.4355,-5.1316,0	1/1:2:0,2:0:0:2:64:-6.07784,-0.60206,0	0/1:40:15,25:15:531:25:896:-68.917,0,-36.0807	0/1:38:29,9:29:1036:9:324:-18.038,0,-82.1115	1/1:59:0,59:0:0:59:2120:-191.066,-17.7608,0	1/1:48:1,47:1:36:47:1684:-148.208,-10.8512,0
chr05	14678151	.	T	G	138080	PASS	AB=0.489346;ABP=7.08194;AC=140;AF=0.744681;AN=188;AO=7128;CIGAR=1X;DP=9251;DPB=9251;DPRA=0;EPP=15481.3;EPPR=4606.53;GTI=0;LEN=1;MEANALT=1.03191;MQM=38.9132;MQMR=41.2542;NS=94;NUMALT=1;ODDS=3.89674;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=254025;QR=75777;RO=2120;RPL=7126;RPP=15463.9;RPPR=4597.85;RPR=2;RUN=1;SAF=7126;SAP=15463.9;SAR=2;SRF=2119;SRP=4597.85;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:23,26:23:820:26:932:-60.8013,0,-54.7569	1/1:148:1,147:1:36:147:5254:-422.607,-41.1648,0	0/1:127:52,75:52:1863:75:2657:-175.895,0,-119.178	1/1:154:3,151:3:104:151:5407:-452.123,-36.8304,0	1/1:148:0,148:0:0:148:5289:-445.039,-44.5524,0	1/1:102:0,102:0:0:102:3597:-291.657,-30.7051,0	0/1:106:62,44:62:2211:44:1565:-104.138,0,-162.812	1/1:117:0,116:0:0:116:4140:-335.832,-34.9195,0	0/1:62:41,21:41:1468:21:756:-42.4409,0,-105.215	1/1:123:0,123:0:0:123:4399:-379.813,-37.0267,0	1/1:66:0,66:0:0:66:2350:-203.003,-19.868,0	0/1:74:35,39:35:1241:39:1375:-89.9804,0,-83.0891	0/1:66:41,25:41:1476:25:881:-51.6045,0,-105.218	0/1:79:38,41:38:1353:41:1472:-100.769,0,-93.3594	1/1:56:0,56:0:0:56:2003:-171.795,-16.8577,0	1/1:51:0,51:0:0:51:1824:-154.842,-15.3525,0	1/1:67:0,67:0:0:67:2408:-194.664,-20.169,0	1/1:37:0,37:0:0:37:1328:-108.221,-11.1381,0	1/1:43:0,43:0:0:43:1527:-124.927,-12.9443,0	0/1:147:79,68:79:2828:68:2417:-165.023,0,-204.005	1/1:105:0,105:0:0:105:3732:-314.978,-31.6082,0	0/1:84:55,29:55:1980:29:1036:-65.6367,0,-150.275	0/1:81:45,36:45:1605:36:1296:-86.9959,0,-114.777	0/1:33:9,24:9:320:24:846:-61.0401,0,-18.0418	1/1:73:0,73:0:0:73:2597:-220.081,-21.9752,0	1/1:400:0,400:0:0:400:14271:-1255.47,-120.412,0	0/1:195:106,89:106:3803:89:3196:-210.566,0,-268.565	0/1:46:26,20:26:936:20:720:-47.5787,0,-66.9106	0/1:363:168,195:168:6019:195:6905:-497.694,0,-423.35	0/1:111:51,60:51:1814:60:2145:-148.128,0,-122.447	1/1:104:0,104:0:0:104:3722:-321.077,-31.3071,0	0/1:8:4,4:4:144:4:144:-10.0439,0,-10.3115	1/1:20:1,19:1:36:19:680:-54.4742,-2.56611,0	0/1:10:8,2:8:275:2:72:-3.1574,0,-20.5141	1/1:4:0,4:0:0:4:144:-12.0108,-1.20412,0	0/1:13:6,7:6:216:7:248:-16.6586,0,-13.6143	1/1:232:0,232:0:0:232:8258:-721.792,-69.839,0	1/1:174:1,173:1:36:173:6167:-517.717,-48.9247,0	1/1:61:0,61:0:0:61:2176:-176.386,-18.3628,0	0/1:5:3,2:3:108:2:72:-4.93129,0,-8.16742	0/1:225:108,117:108:3847:117:4172:-284.741,0,-264.589	0/1:59:28,31:28:1004:31:1088:-74.812,0,-68.0026	0/1:72:42,30:42:1508:30:1068:-69.4203,0,-106.895	0/1:85:45,40:45:1612:40:1419:-96.9942,0,-114.749	1/1:68:0,68:0:0:68:2418:-208.392,-20.47,0	1/1:67:0,66:0:0:66:2359:-207.523,-19.868,0	1/1:140:0,140:0:0:140:4975:-404.434,-42.1442,0	0/1:186:90,96:90:3213:96:3432:-239.519,0,-226.915	1/1:141:1,140:1:36:140:4941:-424.44,-38.9242,0	1/1:138:0,138:0:0:138:4944:-426.322,-41.5421,0	1/1:110:0,110:0:0:110:3912:-342.904,-33.1133,0	0/1:16:6,10:6:212:10:360:-26.4298,0,-14.2244	1/1:252:0,252:0:0:252:8969:-727.123,-75.8596,0	1/1:75:0,75:0:0:75:2696:-237.125,-22.5773,0	0/1:20:6,14:6:216:14:500:-34.5412,0,-12.3519	0/1:165:81,84:81:2874:84:2957:-200.982,0,-198.251	1/1:53:1,52:1:36:52:1837:-156.367,-12.4336,0	0/1:9:6,3:6:216:3:108:-7.14955,0,-16.6601	0/1:23:9,14:9:324:14:500:-36.9504,0,-21.9465	1/1:85:0,85:0:0:85:3052:-256.654,-25.5876,0	0/1:93:47,46:47:1683:46:1626:-111.974,0,-120.036	0/1:13:5,8:5:180:8:288:-21.1143,0,-12.2832	0/1:263:142,121:142:5104:121:4302:-296.993,0,-373.288	0/1:224:114,110:114:4084:110:3931:-271.492,0,-289.413	0/1:46:20,26:20:707:26:932:-65.168,0,-45.8119	0/1:62:35,27:35:1260:27:957:-64.403,0,-91.9881	1/1:195:0,195:0:0:195:6949:-600.662,-58.7009,0	0/1:87:54,33:54:1931:33:1173:-74.3544,0,-143.965	0/1:42:20,22:20:720:22:792:-54.6517,0,-49.2184	0/1:48:33,15:33:1175:15:540:-29.5872,0,-84.5165	0/1:75:32,43:32:1135:43:1527:-111.144,0,-78.1258	0/1:21:12,9:12:432:9:324:-21.8753,0,-32.0574	1/1:89:0,89:0:0:89:3179:-257.495,-26.7917,0	1/1:50:0,50:0:0:50:1792:-146.151,-15.0515,0	1/1:119:0,119:0:0:119:4259:-360.616,-35.8226,0	1/1:212:1,211:1:36:211:7551:-648.534,-60.2974,0	0/1:118:59,58:59:2071:58:2032:-129.086,0,-139.316	1/1:75:0,75:0:0:75:2681:-217.741,-22.5773,0	0/1:9:8,1:8:284:1:36:-0.536889,0,-21.7603	1/1:136:2,134:2:63:134:4794:-398.499,-35.0935,0	0/1:82:33,49:33:1175:49:1739:-115.604,0,-74.9035	1/1:299:0,299:0:0:299:10661:-919.968,-90.008,0	1/1:110:0,110:0:0:110:3910:-337.779,-33.1133,0	0/1:44:20,24:20:720:24:852:-60.6313,0,-50.3043	1/1:50:0,50:0:0:50:1778:-154.03,-15.0515,0	0/1:133:68,65:68:2428:65:2336:-159.954,0,-174.057	0/1:56:34,22:34:1215:22:788:-46.4172,0,-86.4909	1/1:79:0,79:0:0:79:2836:-230.548,-23.7814,0	1/1:57:0,57:0:0:57:2031:-165.48,-17.1587,0	1/1:57:1,56:1:36:56:2008:-168.215,-15.2672,0	0/1:127:63,64:63:2256:64:2255:-151.962,0,-156.65	0/1:68:36,32:36:1292:32:1133:-77.4949,0,-92.9637	1/1:96:0,96:0:0:96:3412:-294.223,-28.8989,0	1/1:83:0,83:0:0:83:2906:-250.716,-24.9855,0
chr05	14683657	.	C	T	45490.4	PASS	AB=0.547663;ABP=78.5638;AC=49;AF=0.260638;AN=188;AO=2112;CIGAR=1X;DP=8213;DPB=8213;DPRA=1.07953;EPP=1740.6;EPPR=5723.36;GTI=1;LEN=1;MEANALT=1.05455;MQM=59.938;MQMR=59.9957;NS=94;NUMALT=1;ODDS=5.04728;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75566;QR=217231;RO=6098;RPL=1706;RPP=1740.6;RPPR=5717.65;RPR=406;RUN=1;SAF=2112;SAP=4589.16;SAR=0;SRF=6095;SRP=13218.6;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:15,8:15:527:8:288:-19.3437,0,-40.8365	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.604	0/1:103:51,52:51:1828:52:1868:-137.393,0,-133.795	0/0:309:309,0:309:11010:0:0:0,-93.0183,-990.799	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/1:70:40,30:40:1424:30:1072:-75.7204,0,-107.385	0/0:125:125,0:125:4445:0:0:0,-37.6287,-400.222	0/1:117:58,59:58:2065:59:2120:-155.846,0,-150.899	0/0:96:96,0:96:3408:0:0:0,-28.8989,-306.934	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/1:57:30,27:30:1062:27:957:-69.2852,0,-78.7313	0/1:42:26,16:26:904:16:576:-39.5317,0,-69.0286	0/1:41:15,26:15:532:26:927:-71.4051,0,-35.8709	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:41:41,0:41:1437:0:0:0,-12.3422,-129.621	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:29:29,0:29:1016:0:0:0,-8.72987,-91.749	0/1:173:72,101:72:2559:101:3621:-274.013,0,-178.482	0/0:137:137,0:137:4891:0:0:0,-41.2411,-440.343	0/1:189:66,123:66:2343:123:4383:-337.745,0,-154.228	0/1:133:51,82:51:1809:82:2926:-223.538,0,-123.053	0/1:91:51,40:51:1814:40:1423:-100.973,0,-136.146	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/0:313:312,1:312:11108:1:36:0,-90.6241,-996.019	0/1:165:92,73:92:3275:73:2621:-186.462,0,-245.301	0/1:28:16,12:16:572:12:423:-29.9762,0,-43.3846	0/1:223:112,111:112:3991:111:3980:-291.26,0,-292.251	0/1:117:45,72:45:1612:72:2588:-197.948,0,-110.15	0/0:167:167,0:167:5928:0:0:0,-50.272,-533.632	0/1:16:6,10:6:212:10:360:-27.9278,0,-14.6083	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:206:206,0:206:7323:0:0:0,-62.0122,-659.121	0/0:164:164,0:164:5833:0:0:0,-49.3689,-525.085	0/0:49:49,0:49:1736:0:0:0,-14.7505,-156.522	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:139:65,74:65:2328:74:2638:-195.823,0,-167.937	0/1:31:15,16:15:531:16:557:-41.1236,0,-38.79	0/1:145:70,75:70:2508:75:2688:-198.429,0,-182.318	0/1:56:26,30:26:936:30:1076:-80.2952,0,-67.7018	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/0:99:99,0:99:3510:0:0:0,-29.802,-316.112	0/0:98:98,0:98:3491:0:0:0,-29.5009,-314.402	0/1:182:82,100:82:2927:100:3567:-266.446,0,-208.877	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.593	0/0:129:128,1:128:4582:1:36:0,-35.2346,-408.945	0/0:128:128,0:128:4583:0:0:0,-38.5318,-412.634	0/1:16:3,13:3:108:13:458:-36.7349,0,-5.25869	0/0:111:111,0:111:3979:0:0:0,-33.4143,-358.299	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:92:42,50:42:1499:50:1792:-133.868,0,-107.509	0/0:150:148,1:148:5259:1:36:0,-41.5401,-469.924	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.225	0/1:105:55,50:55:1968:50:1800:-130.674,0,-145.787	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:213:75,138:75:2679:138:4947:-381.258,0,-177.235	0/1:223:89,134:89:3180:134:4799:-364.935,0,-219.295	0/1:65:28,37:28:1008:37:1332:-100.607,0,-71.4694	0/1:86:44,42:44:1576:42:1504:-109.766,0,-116.243	0/0:196:193,3:193:6886:3:100:0,-49.6748,-610.483	0/1:119:27,92:27:968:92:3291:-259.564,0,-51.6148	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:50:20,30:20:711:30:1080:-82.4618,0,-49.2641	0/1:82:43,38:43:1540:38:1357:-97.6862,0,-114.15	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:92:92,0:92:3281:0:0:0,-27.6948,-295.509	0/0:158:158,0:158:5620:0:0:0,-47.5627,-505.923	0/0:112:112,0:112:4001:0:0:0,-33.7154,-360.278	0/1:111:57,54:57:2017:54:1944:-141.822,0,-148.387	0/0:64:62,2:62:2188:2:72:0,-12.4292,-190.347	0/1:10:3,7:3:104:7:252:-20.0187,0,-6.69251	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/1:118:53,65:53:1900:65:2312:-172.817,0,-135.756	0/0:211:209,1:209:7443:1:36:0,-59.9778,-666.319	0/0:89:89,0:89:3164:0:0:0,-26.7917,-284.983	0/1:41:27,14:27:946:14:500:-32.9939,0,-73.1106	0/0:58:58,0:58:2051:0:0:0,-17.4597,-184.861	0/1:125:55,70:55:1972:70:2497:-187.352,0,-140.126	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5751	0/0:64:64,0:64:2242:0:0:0,-19.2659,-202.041	0/0:55:55,0:55:1958:0:0:0,-16.5566,-176.494	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:59:25,34:25:896:34:1211:-91.5301,0,-63.1996	0/1:53:20,33:20:712:33:1179:-90.4626,0,-48.4521	0/0:63:63,0:63:2226:0:0:0,-18.9649,-200.604	0/0:60:59,1:59:2116:1:36:0,-14.4635,-187.11
chr05	14683681	.	C	T	36047.1	PASS	AB=0.547625;ABP=78.0911;AC=49;AF=0.260638;AN=188;AO=2105;CIGAR=1X;DP=8154;DPB=8154;DPRA=1.14449;EPP=4573.96;EPPR=13103.5;GTI=1;LEN=1;MEANALT=1.05263;MQM=59.9767;MQMR=59.9887;NS=94;NUMALT=1;ODDS=4.84487;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74922;QR=211636;RO=6041;RPL=2105;RPP=4573.96;RPPR=13120.9;RPR=0;RUN=1;SAF=2105;SAP=4573.96;SAR=0;SRF=6039;SRP=13103.5;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:15,8:15:508:8:275:-18.1598,0,-39.1163	0/0:125:125,0:125:4388:0:0:0,-37.6287,-395.097	0/1:104:52,52:52:1847:52:1842:-134.751,0,-135.202	0/0:300:297,2:297:10477:2:72:0,-83.5311,-936.022	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.897	0/0:42:41,1:41:1413:1:36:0,-9.04498,-123.862	0/1:70:38,32:38:1343:32:1129:-80.8442,0,-100.097	0/0:122:122,0:122:4313:0:0:0,-36.7257,-388.348	0/1:114:56,58:56:1977:58:2057:-151.082,0,-143.886	0/0:94:94,0:94:3291:0:0:0,-28.2968,-296.409	0/0:31:31,0:31:1085:0:0:0,-9.33193,-97.957	0/1:57:30,27:30:1035:27:955:-69.1061,0,-76.2966	0/1:40:24,16:24:839:16:576:-40.1338,0,-63.7861	0/1:41:14,27:14:483:27:963:-74.6437,0,-31.4551	0/0:49:49,0:49:1702:0:0:0,-14.7505,-153.461	0/0:28:28,0:28:973:0:0:0,-8.42884,-87.8798	0/0:39:39,0:39:1362:0:0:0,-11.7402,-122.877	0/0:34:34,0:34:1177:0:0:0,-10.235,-106.232	0/0:29:29,0:29:1010:0:0:0,-8.72987,-91.2096	0/1:174:74,100:74:2611:100:3563:-268.497,0,-182.857	0/0:137:136,0:136:4719:0:0:0,-40.9401,-424.516	0/1:189:66,123:66:2338:123:4387:-338.106,0,-153.784	0/1:133:51,82:51:1779:82:2922:-223.178,0,-120.352	0/1:91:50,40:50:1715:40:1428:-101.365,0,-127.174	0/0:79:79,0:79:2782:0:0:0,-23.7814,-250.617	0/0:311:310,1:310:10820:1:36:0,-90.022,-970.129	0/1:166:92,74:92:3253:74:2611:-185.266,0,-243.019	0/1:28:16,12:16:568:12:422:-29.8854,0,-43.023	0/1:219:113,106:113:3978:106:3769:-273.484,0,-292.285	0/1:115:44,71:44:1555:71:2556:-195.671,0,-105.623	0/0:164:164,0:164:5672:0:0:0,-49.3689,-510.606	0/1:15:5,10:5:165:10:360:-28.2289,0,-10.6582	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:6:2,4:2:63:4:140:-11.1384,0,-4.17697	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:200:200,0:200:6940:0:0:0,-60.206,-624.678	0/0:170:170,0:170:5953:0:0:0,-51.1751,-535.884	0/0:49:49,0:49:1685:0:0:0,-14.7505,-151.931	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:138:67,71:67:2379:71:2539:-187.218,0,-172.826	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	0/1:145:70,75:70:2448:75:2664:-196.355,0,-176.925	0/1:55:26,29:26:916:29:1040:-77.3577,0,-66.1998	0/0:48:48,0:48:1673:0:0:0,-14.4494,-150.854	0/0:100:99,0:99:3493:0:0:0,-29.802,-314.218	0/0:96:96,0:96:3339:0:0:0,-28.8989,-300.729	0/1:183:83,100:83:2910:100:3551:-264.707,0,-207.047	0/0:76:76,0:76:2671:0:0:0,-22.8783,-240.635	0/0:127:127,0:127:4465:0:0:0,-38.2308,-402.022	0/0:130:130,0:130:4541:0:0:0,-39.1339,-408.847	0/1:16:3,13:3:108:13:464:-37.2767,0,-5.25869	0/0:112:109,0:109:3809:0:0:0,-32.8123,-342.696	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:22:7,15:7:243:15:532:-41.5904,0,-15.5848	0/1:90:42,48:42:1491:48:1705:-126.642,0,-107.391	0/0:146:145,1:145:5062:1:36:0,-40.3521,-452.13	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/0:55:55,0:55:1924:0:0:0,-16.5566,-173.435	0/1:107:56,51:56:1907:51:1819:-131.78,0,-139.692	0/1:7:2,5:2:53:5:180:-14.4449,0,-2.92709	0/1:206:72,134:72:2553:134:4785:-368.795,0,-168.007	0/1:227:90,137:90:3179:137:4848:-368.139,0,-218	0/1:65:27,38:27:949:38:1351:-102.319,0,-66.1558	0/1:86:44,42:44:1537:42:1478:-107.424,0,-112.731	0/0:195:192,3:192:6740:3:108:0,-48.6341,-596.618	0/1:118:27,91:27:939:91:3194:-252.158,0,-49.2984	0/1:7:3,4:3:99:4:144:-11.2064,0,-7.12937	0/1:48:19,29:19:676:29:1040:-79.4649,0,-46.7186	0/1:81:45,36:45:1572:36:1296:-92.5605,0,-117.384	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:74:74,0:74:2570:0:0:0,-22.2762,-231.547	0/0:91:91,0:91:3212:0:0:0,-27.3937,-289.303	0/0:157:157,0:157:5515:0:0:0,-47.2617,-496.48	0/0:111:111,0:111:3888:0:0:0,-33.4143,-350.117	0/1:105:52,53:52:1810:53:1888:-138.59,0,-131.569	0/0:65:63,2:63:2201:2:72:0,-12.7302,-191.516	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:60:60,0:60:2136:0:0:0,-18.0618,-192.506	0/1:119:54,65:54:1899:65:2317:-172.966,0,-135.362	0/0:213:212,1:212:7465:1:36:0,-60.5211,-668.303	0/0:87:87,0:87:3028:0:0:0,-26.1896,-272.748	0/1:41:26,14:26:884:14:493:-32.3384,0,-67.5068	0/0:55:54,1:54:1854:1:36:0,-12.9584,-163.538	0/1:125:54,71:54:1891:71:2539:-191.131,0,-132.836	0/1:35:19,16:19:676:16:576:-41.6389,0,-50.6143	0/0:65:65,0:65:2273:0:0:0,-19.5669,-204.829	0/0:56:56,0:56:1964:0:0:0,-16.8577,-177.033	0/0:15:15,0:15:509:0:0:0,-4.51545,-46.1312	0/1:61:27,34:27:955:34:1220:-91.744,0,-67.902	0/1:52:19,33:19:667:33:1184:-91.2148,0,-44.7011	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/0:60:59,1:59:2076:1:36:0,-14.4635,-183.513
chr05	14683756	.	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chr05	16266504	.	G	A	7711.03	PASS	AB=0.285797;ABP=693.273;AC=44;AF=0.234043;AN=188;AO=514;CIGAR=1X;DP=5158;DPB=5158;DPRA=0.65386;EPP=1119.15;EPPR=10076.5;GTI=35;LEN=1;MEANALT=1.02174;MQM=56.0992;MQMR=11.3042;NS=94;NUMALT=1;ODDS=194.225;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=18202;QR=163956;RO=4639;RPL=0;RPP=1119.15;RPPR=10076.5;RPR=514;RUN=1;SAF=0;SAP=1119.15;SAR=514;SRF=0;SRP=10076.5;SRR=4639;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:15,6:15:540:6:207:-12.6453,0,-8.6212	0/0:77:77,0:77:2725:0:0:0,-23.1793,-77.8751	0/1:99:58,41:58:2031:41:1448:-100.373,0,-33.5562	0/0:155:155,0:155:5465:0:0:0,-46.6596,-147.133	0/0:46:46,0:46:1640:0:0:0,-13.8474,-47.2184	0/0:28:28,0:28:995:0:0:0,-8.42884,-27.7885	0/1:40:26,14:26:932:14:504:-33.5697,0,-14.2344	0/0:78:78,0:78:2770:0:0:0,-23.4803,-80.6518	0/1:36:24,12:24:847:12:408:-25.7965,0,-13.7138	0/0:77:77,0:77:2727:0:0:0,-23.1793,-72.9787	0/0:62:62,0:62:2152:0:0:0,-18.6639,-58.7388	0/1:36:24,12:24:847:12:430:-27.8241,0,-12.9041	0/1:40:32,8:32:1143:8:284:-13.7876,0,-19.4343	0/1:42:28,14:28:984:14:500:-32.6597,0,-16.8202	0/0:30:30,0:30:1072:0:0:0,-9.0309,-34.115	0/0:29:29,0:29:1036:0:0:0,-8.72987,-28.6033	0/0:52:52,0:52:1828:0:0:0,-15.6536,-60.5881	0/0:34:34,0:34:1215:0:0:0,-10.235,-33.6334	0/0:15:15,0:15:518:0:0:0,-4.51545,-14.8367	0/1:82:73,9:73:2594:9:324:-4.62083,0,-48.0955	0/0:139:139,0:139:4909:0:0:0,-41.8432,-143.696	0/1:30:21,9:21:756:9:310:-19.0211,0,-14.3351	0/1:38:34,4:34:1175:4:140:-1.46508,0,-20.6771	0/1:51:38,13:38:1347:13:468:-26.9494,0,-22.0516	0/0:37:36,0:36:1277:0:0:0,-10.8371,-37.7392	0/0:249:249,0:249:8761:0:0:0,-74.9565,-236.511	0/1:123:74,49:74:2632:49:1729:-118.731,0,-39.5678	0/1:12:10,2:10:356:2:68:-2.84535,0,-6.38442	0/1:83:71,12:71:2514:12:428:-13.7094,0,-43.2281	0/1:60:37,23:37:1293:23:828:-56.353,0,-18.2323	0/0:244:244,0:244:8659:0:0:0,-73.4513,-232.622	0/1:4:3,1:3:108:1:36:-2.39415,0,-1.87235	0/0:10:10,0:10:360:0:0:0,-3.0103,-9.90777	0/1:9:6,3:6:192:3:104:-6.99354,0,-3.10913	0/0:4:4,0:4:144:0:0:0,-1.20412,-4.06533	0/1:7:4,3:4:144:3:108:-7.96796,0,-1.95812	0/0:106:106,0:106:3747:0:0:0,-31.9092,-96.2294	0/0:136:134,2:134:4693:2:72:0,-34.1038,-132.326	0/0:45:45,0:45:1591:0:0:0,-13.5463,-48.073	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.09874	0/1:64:40,24:40:1423:24:848:-56.9024,0,-20.119	0/1:13:9,4:9:324:4:144:-8.75688,0,-5.09626	0/1:70:46,23:46:1625:23:824:-53.2431,0,-26.1988	0/1:34:27,7:27:963:7:252:-12.7787,0,-16.3086	0/0:42:42,0:42:1485:0:0:0,-12.6433,-42.3606	0/0:62:62,0:62:2188:0:0:0,-18.6639,-58.3748	0/0:77:77,0:77:2728:0:0:0,-23.1793,-88.2094	0/1:76:58,18:58:2058:18:644:-35.3145,0,-34.3696	0/0:71:71,0:71:2531:0:0:0,-21.3731,-68.0647	0/0:109:109,0:109:3818:0:0:0,-32.8123,-101.919	0/0:107:107,0:107:3799:0:0:0,-32.2102,-96.978	0/1:15:13,2:13:464:2:72:-2.2836,0,-7.54279	0/0:78:78,0:78:2792:0:0:0,-23.4803,-81.5606	0/0:16:16,0:16:572:0:0:0,-4.81648,-14.4844	0/0:13:12,1:12:428:1:36:0,-0.315115,-10.4659	0/1:70:39,31:39:1377:31:1085:-76.8171,0,-18.7098	0/0:14:14,0:14:466:0:0:0,-4.21442,-12.9865	0/0:1:1,0:1:36:0:0:0,-0.30103,-0.999019	0/1:4:3,1:3:108:1:36:-2.37893,0,-1.59313	0/0:59:58,0:58:2055:0:0:0,-17.4597,-64.3581	0/1:45:38,7:38:1351:7:248:-9.06168,0,-21.7005	0/0:2:2,0:2:72:0:0:0,-0.60206,-1.89814	0/0:97:90,7:90:3197:7:252:0,-6.2726,-59.4016	0/1:71:54,17:54:1920:17:590:-29.5724,0,-32.6785	0/1:44:34,10:34:1189:10:360:-19.4851,0,-20.0838	0/1:43:39,4:39:1377:4:144:-0.291835,0,-25.4362	0/0:102:102,0:102:3607:0:0:0,-30.7051,-96.0534	0/1:31:26,5:26:924:5:173:-6.52622,0,-14.8621	0/1:9:5,4:5:180:4:135:-9.72247,0,-2.34492	0/1:23:13,10:13:464:10:341:-23.975,0,-5.94917	0/1:36:30,6:30:1054:6:208:-8.0413,0,-16.3116	0/1:9:5,4:5:180:4:144:-10.5899,0,-1.88622	0/0:47:47,0:47:1652:0:0:0,-14.1484,-46.8075	0/0:53:53,0:53:1875:0:0:0,-15.9546,-52.5904	0/0:95:94,0:94:3303:0:0:0,-28.2968,-100.35	0/0:99:99,0:99:3524:0:0:0,-29.802,-92.7227	0/1:41:29,12:29:1040:12:432:-26.8344,0,-16.3529	0/0:119:119,0:119:4235:0:0:0,-35.8226,-118.251	1/1:9:0,9:0:0:9:314:-28.5837,-2.70927,0	0/0:89:88,0:88:3114:0:0:0,-26.4906,-91.9301	0/1:73:45,28:45:1600:28:995:-67.7569,0,-25.816	0/0:102:102,0:102:3565:0:0:0,-30.7051,-99.2007	0/0:50:50,0:50:1761:0:0:0,-15.0515,-47.974	0/1:19:17,2:17:612:2:72:-1.05737,0,-11.3293	0/0:51:51,0:51:1771:0:0:0,-15.3525,-49.6357	0/1:54:44,10:44:1567:10:349:-15.2099,0,-24.4755	0/1:14:6,8:6:216:8:284:-21.5612,0,-3.62145	0/0:51:51,0:51:1817:0:0:0,-15.3525,-56.0806	0/0:30:30,0:30:1035:0:0:0,-9.0309,-32.6058	0/0:31:31,0:31:1055:0:0:0,-9.33193,-31.6875	0/1:38:25,13:25:896:13:464:-30.6061,0,-13.2103	0/1:23:13,10:13:445:10:360:-25.7043,0,-5.59302	0/0:55:55,0:55:1922:0:0:0,-16.5566,-50.7597	0/0:41:41,0:41:1441:0:0:0,-12.3422,-39.3797
chr05	16266543	.	A	C	6678.85	PASS	AB=0.282659;ABP=712.823;AC=44;AF=0.234043;AN=188;AO=509;CIGAR=1X;DP=5201;DPB=5201;DPRA=0.646164;EPP=1108.29;EPPR=10182.9;GTI=35;LEN=1;MEANALT=1.04348;MQM=56.3222;MQMR=11.8889;NS=94;NUMALT=1;ODDS=0.16329;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=18193;QR=167975;RO=4688;RPL=509;RPP=1108.29;RPPR=10182.9;RPR=0;RUN=1;SAF=0;SAP=1108.29;SAR=509;SRF=0;SRP=10182.9;SRR=4688;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:17,6:17:612:6:216:-12.8668,0,-9.99687	0/0:77:77,0:77:2760:0:0:0,-23.1793,-77.8274	0/1:96:56,40:56:2008:40:1436:-100.192,0,-32.7658	0/0:153:153,0:153:5465:0:0:0,-46.0576,-148.687	0/0:46:46,0:46:1636:0:0:0,-13.8474,-47.5749	0/0:29:29,0:29:1017:0:0:0,-8.72987,-28.7484	0/1:41:26,15:26:924:15:536:-36.1454,0,-13.9303	0/0:83:83,0:83:2980:0:0:0,-24.9855,-94.627	0/1:35:23,12:23:809:12:428:-27.9092,0,-12.5933	0/0:82:82,0:82:2940:0:0:0,-24.6845,-84.631	0/0:63:63,0:63:2241:0:0:0,-18.9649,-64.6924	0/1:36:24,12:24:864:12:432:-27.8944,0,-12.9154	0/1:38:32,6:32:1152:6:216:-8.33349,0,-20.0442	0/1:43:29,14:29:1044:14:500:-32.3587,0,-17.879	0/0:30:30,0:30:1080:0:0:0,-9.0309,-34.2568	0/0:28:28,0:28:1004:0:0:0,-8.42884,-27.6161	0/0:53:53,0:53:1908:0:0:0,-15.9546,-68.3888	0/0:35:35,0:35:1252:0:0:0,-10.536,-34.627	0/0:15:15,0:15:540:0:0:0,-4.51545,-14.8524	0/1:82:72,10:72:2568:10:356:-7.26703,0,-47.1383	0/0:139:139,0:139:4954:0:0:0,-41.8432,-150.81	0/1:29:22,7:22:788:7:252:-14.186,0,-17.5245	0/1:37:33,4:33:1184:4:144:-2.1244,0,-20.1578	0/1:49:36,13:36:1296:13:456:-26.5383,0,-20.6884	0/0:39:39,0:39:1400:0:0:0,-11.7402,-40.659	0/0:250:250,0:250:8984:0:0:0,-75.2575,-240.31	0/1:123:74,48:74:2660:48:1724:-118.453,0,-39.5765	0/1:12:10,2:10:360:2:72:-3.22436,0,-6.38615	0/1:83:71,12:71:2533:12:428:-13.7044,0,-44.8254	0/1:63:39,24:39:1392:24:860:-58.3254,0,-19.7051	0/0:250:250,0:250:8938:0:0:0,-75.2575,-246.066	0/1:4:3,1:3:108:1:36:-2.39415,0,-1.87235	0/0:10:10,0:10:356:0:0:0,-3.0103,-9.90604	0/1:9:6,3:6:216:3:108:-7.3659,0,-3.15097	0/0:4:4,0:4:144:0:0:0,-1.20412,-4.06533	0/1:7:4,3:4:144:3:108:-7.96796,0,-1.95812	0/0:109:109,0:109:3916:0:0:0,-32.8123,-101.34	0/0:140:138,2:138:4941:2:72:0,-35.3079,-143.484	0/0:46:46,0:46:1656:0:0:0,-13.8474,-51.3323	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.09874	0/1:63:39,24:39:1404:24:849:-56.5059,0,-19.4407	0/1:13:9,4:9:324:4:144:-8.75688,0,-5.09626	0/1:70:47,23:47:1672:23:824:-53.0527,0,-29.1648	0/1:33:26,7:26:932:7:252:-13.0797,0,-16.4294	0/0:42:42,0:42:1504:0:0:0,-12.6433,-43.4091	0/0:60:60,0:60:2144:0:0:0,-18.0618,-56.6135	0/0:78:78,0:78:2800:0:0:0,-23.4803,-93.3107	0/1:76:58,18:58:2080:18:648:-35.6758,0,-34.3831	0/0:73:73,0:73:2620:0:0:0,-21.9752,-74.5581	0/0:110:110,0:110:3944:0:0:0,-33.1133,-105.256	0/0:107:107,0:107:3844:0:0:0,-32.2102,-97.0207	0/1:14:12,2:12:432:2:72:-2.58463,0,-6.94662	0/0:79:79,0:79:2829:0:0:0,-23.7814,-82.4327	0/0:16:16,0:16:572:0:0:0,-4.81648,-14.4844	0/0:13:12,1:12:432:1:36:0,-0.315115,-10.4672	0/1:71:41,30:41:1472:30:1068:-75.0084,0,-22.3205	0/0:17:17,0:17:608:0:0:0,-5.11751,-20.4541	0/0:1:1,0:1:36:0:0:0,-0.30103,-0.999019	0/1:4:3,1:3:108:1:36:-2.37893,0,-1.59313	0/0:60:60,0:60:2147:0:0:0,-18.0618,-71.2069	0/1:46:39,7:39:1404:7:248:-8.76065,0,-22.3073	0/0:2:2,0:2:72:0:0:0,-0.60206,-1.89814	0/0:97:89,8:89:3196:8:288:0,-3.03396,-55.2985	0/1:70:55,15:55:1976:15:525:-26.3861,0,-35.8711	0/1:45:35,10:35:1248:10:360:-19.1841,0,-20.7188	0/1:43:38,5:38:1368:5:180:-3.5307,0,-24.5675	0/0:102:102,0:102:3664:0:0:0,-30.7051,-98.3773	0/1:33:28,5:28:1000:5:180:-6.55572,0,-16.059	0/1:10:6,4:6:216:4:140:-9.87328,0,-3.03276	0/1:22:13,9:13:468:9:324:-22.6607,0,-6.25193	0/1:39:31,8:31:1116:8:288:-14.3222,0,-18.6702	0/1:10:6,4:6:216:4:140:-9.91978,0,-2.48431	0/0:49:49,0:49:1752:0:0:0,-14.7505,-50.9932	0/0:52:52,0:52:1845:0:0:0,-15.6536,-53.5653	0/0:96:96,0:96:3448:0:0:0,-28.8989,-102.838	0/0:101:101,0:101:3624:0:0:0,-30.404,-96.5378	0/1:40:28,12:28:1008:12:432:-27.1354,0,-15.6668	0/0:121:121,0:121:4336:0:0:0,-36.4246,-124.413	1/1:9:0,9:0:0:9:324:-29.4611,-2.70927,0	0/0:90:90,0:90:3208:0:0:0,-27.0927,-95.8607	0/1:75:47,28:47:1688:28:1000:-67.6062,0,-32.0508	0/0:103:103,0:103:3692:0:0:0,-31.0061,-104.546	0/0:52:51,0:51:1832:0:0:0,-15.3525,-53.4843	0/1:19:17,2:17:612:2:72:-1.05737,0,-11.3293	0/0:51:51,0:51:1828:0:0:0,-15.3525,-49.6906	0/1:52:43,9:43:1544:9:320:-13.4527,0,-24.1859	0/1:13:6,7:6:216:7:252:-18.9948,0,-3.92248	0/0:52:52,0:52:1868:0:0:0,-15.6536,-57.0126	0/0:29:29,0:29:1040:0:0:0,-8.72987,-32.9897	0/0:30:30,0:30:1076:0:0:0,-9.0309,-30.7609	0/1:39:25,14:25:900:14:500:-33.3964,0,-12.911	0/1:20:9,9:9:324:9:311:-22.571,0,-2.83914	0/0:55:55,0:55:1968:0:0:0,-16.5566,-53.146	0/0:42:42,0:42:1508:0:0:0,-12.6433,-43.0025
chr05	16335769	.	T	A	40612.6	PASS	AB=0.502969;ABP=3.28104;AC=48;AF=0.255319;AN=188;AO=1786;CIGAR=1X;DP=7684;DPB=7684;DPRA=0.905019;EPP=14.2154;EPPR=50.2767;GTI=2;LEN=1;MEANALT=1.07843;MQM=59.9434;MQMR=59.9817;NS=94;NUMALT=1;ODDS=0.194843;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63643;QR=209232;RO=5888;RPL=5;RPP=3837.95;RPPR=11976.8;RPR=1781;RUN=1;SAF=946;SAP=16.6714;SAR=840;SRF=2860;SRP=13.4192;SRR=3028;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:31,14:31:1095:14:500:-31.7898,0,-85.3127	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/1:130:53,77:53:1879:77:2756:-209.148,0,-130.254	0/0:167:166,1:166:5863:1:36:0,-46.6737,-524.187	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.443	0/0:52:52,0:52:1843:0:0:0,-15.6536,-166.15	0/1:46:22,24:22:788:24:856:-63.5114,0,-57.3974	0/0:145:145,0:145:5149:0:0:0,-43.6493,-463.554	0/1:122:57,65:57:2007:65:2306:-171.061,0,-144.178	0/0:55:54,1:54:1921:1:36:0,-12.9584,-169.567	0/0:78:78,0:78:2762:0:0:0,-23.4803,-248.822	0/1:162:76,85:76:2664:85:3039:-224.914,0,-191.181	0/1:132:62,70:62:2202:70:2506:-186.057,0,-158.708	0/1:108:31,77:31:1116:77:2730:-213.429,0,-68.2405	0/0:97:97,0:97:3455:0:0:0,-29.1999,-311.163	0/0:121:121,0:121:4318:0:0:0,-36.4246,-388.796	0/0:69:69,0:69:2451:0:0:0,-20.7711,-220.842	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.341	0/0:64:64,0:64:2275:0:0:0,-19.2659,-205.012	0/1:83:44,38:44:1553:38:1345:-96.304,0,-115.016	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/1:38:11,27:11:392:27:964:-75.6377,0,-24.1809	0/1:75:39,36:39:1388:36:1288:-93.6463,0,-102.642	0/1:46:29,17:29:1031:17:612:-41.5661,0,-79.2552	0/0:51:51,0:51:1806:0:0:0,-15.3525,-162.812	0/0:169:168,1:168:5939:1:36:0,-47.2758,-530.397	0/1:183:105,78:105:3744:78:2761:-193.631,0,-282.073	0/1:67:32,35:32:1110:35:1252:-92.8161,0,-80.0364	0/1:142:93,49:93:3316:49:1755:-115.487,0,-255.913	0/1:87:48,39:48:1708:39:1400:-100.11,0,-127.816	0/0:81:81,0:81:2866:0:0:0,-24.3834,-258.178	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3584	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:277:276,0:276:9822:0:0:0,-83.0843,-883.573	0/0:42:42,0:42:1488:0:0:0,-12.6433,-134.215	0/0:79:79,0:79:2806:0:0:0,-23.7814,-252.78	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:113:63,50:63:2227:50:1780:-126.466,0,-166.678	0/1:45:24,21:24:864:21:752:-54.4599,0,-64.5362	0/1:139:85,54:85:3032:54:1921:-131.322,0,-231.078	0/1:88:43,45:43:1544:45:1602:-117.979,0,-112.762	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.636	0/0:73:73,0:73:2583:0:0:0,-21.9752,-232.717	0/0:80:80,0:80:2822:0:0:0,-24.0824,-254.22	0/1:85:61,23:61:2171:23:816:-48.1156,0,-170.01	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/0:84:84,0:84:2990:0:0:0,-25.2865,-269.332	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:47:46,1:46:1636:1:36:0,-10.5501,-143.93	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:83:53,30:53:1887:30:1071:-71.7161,0,-145.122	0/0:32:32,0:32:1125:0:0:0,-9.63296,-101.556	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:13:7,6:7:240:6:216:-15.8771,0,-18.0213	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/1:114:58,56:58:2067:56:2012:-147.036,0,-151.983	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:125:59,66:59:2091:66:2368:-175.749,0,-150.831	0/1:86:39,47:39:1379:47:1669:-124.607,0,-98.5194	0/1:37:20,17:20:711:17:608:-43.9139,0,-53.1775	0/1:41:31,10:31:1095:10:360:-20.4021,0,-86.5169	0/0:81:81,0:81:2878:0:0:0,-24.3834,-259.257	0/1:87:13,74:13:468:74:2626:-210.394,0,-16.27	0/1:65:34,31:34:1220:31:1104:-80.1037,0,-90.5399	0/1:33:21,12:21:748:12:432:-29.2872,0,-57.7113	0/1:67:23,44:23:802:44:1572:-121.603,0,-52.3284	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/0:64:64,0:64:2259:0:0:0,-19.2659,-203.561	0/0:107:107,0:107:3766:0:0:0,-32.2102,-339.142	0/0:153:150,0:150:5306:0:0:0,-45.1545,-477.319	0/0:148:147,0:147:5276:0:0:0,-44.2514,-474.614	0/1:188:82,106:82:2931:106:3774:-283.267,0,-207.43	0/0:109:109,0:109:3883:0:0:0,-32.8123,-349.666	0/1:12:5,7:5:180:7:252:-19.2851,0,-12.9397	0/0:98:98,0:98:3479:0:0:0,-29.5009,-313.323	0/1:88:46,42:46:1629:42:1491:-107.993,0,-120.406	0/0:189:188,0:188:6689:0:0:0,-56.5936,-601.77	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/1:93:58,35:58:2066:35:1252:-84.9869,0,-158.214	0/0:79:79,0:79:2787:0:0:0,-23.7814,-251.071	0/1:165:74,91:74:2648:91:3229:-241.162,0,-188.897	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/0:101:101,0:101:3561:0:0:0,-30.404,-320.701	0/0:101:101,0:101:3607:0:0:0,-30.404,-324.828	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/1:96:43,52:43:1531:52:1857:-138.415,0,-109.125	0/1:105:26,79:26:920:79:2757:-216.756,0,-51.5089	0/0:144:144,0:144:5119:0:0:0,-43.3483,-460.854	0/0:184:184,0:184:6579:0:0:0,-55.3895,-592.19
chr05	16337430	.	G	A	60670.1	PASS	AB=0.454684;ABP=38.0413;AC=137;AF=0.736559;AN=186;AO=3147;CIGAR=1X;DP=4264;DPB=4264;DPRA=11.6923;EPP=6827.95;EPPR=2417.69;GTI=2;LEN=1;MEANALT=1.05495;MQM=45.5234;MQMR=50.1448;NS=93;NUMALT=1;ODDS=0.272529;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108360;QR=39066;RO=1112;RPL=0;RPP=6836.63;RPPR=2417.69;RPR=3147;RUN=1;SAF=1;SAP=6827.95;SAR=3146;SRF=0;SRP=2417.69;SRR=1112;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:7,6:7:252:6:197:-13.93,0,-18.9436	1/1:48:1,47:1:36:47:1658:-143.796,-10.8602,0	0/1:76:43,33:43:1524:33:1142:-78.9207,0,-113.628	1/1:88:1,86:1:32:86:2988:-261.862,-23.2793,0	1/1:22:0,22:0:0:22:761:-67.8827,-6.62266,0	1/1:5:0,5:0:0:5:163:-14.916,-1.50515,0	0/1:51:29,22:29:1010:22:771:-53.3466,0,-75.3575	1/1:95:0,95:0:0:95:3252:-289.726,-28.5979,0	0/1:56:36,20:36:1253:20:691:-44.7172,0,-95.5173	1/1:33:0,32:0:0:32:1081:-96.3021,-9.63296,0	1/1:36:0,36:0:0:36:1236:-109.896,-10.8371,0	0/1:32:15,17:15:523:17:574:-41.8506,0,-37.5157	0/1:29:13,16:13:456:16:547:-40.2551,0,-32.3298	0/1:39:18,21:18:644:21:698:-50.5462,0,-46.0836	1/1:34:0,34:0:0:34:1190:-106.227,-10.235,0	1/1:27:0,27:0:0:27:904:-80.913,-8.12781,0	1/1:28:1,26:1:27:26:897:-77.2955,-5.72136,0	1/1:10:0,10:0:0:10:341:-30.5226,-3.0103,0	1/1:19:1,18:1:32:18:578:-48.8701,-2.5223,0	0/1:100:58,42:58:2029:42:1483:-101.881,0,-149.11	1/1:80:1,79:1:36:79:2720:-237.387,-20.4841,0	0/1:47:37,10:37:1298:10:338:-16.2268,0,-101.297	0/1:39:22,17:22:770:17:538:-36.6163,0,-57.4871	0/1:46:25,21:25:883:21:731:-50.5712,0,-65.5514	1/1:15:0,15:0:0:15:532:-47.6432,-4.51545,0	1/1:143:5,138:5:146:138:4810:-412.997,-31.1212,0	0/1:85:52,32:52:1830:32:1122:-74.4108,0,-138.235	0/1:10:6,4:6:203:4:140:-9.75722,0,-15.4632	0/1:162:94,68:94:3272:68:2361:-159.041,0,-243.367	0/1:43:19,24:19:632:24:791:-57.6342,0,-43.9219	1/1:82:3,79:3:108:79:2737:-233.495,-15.2766,0	0/1:8:3,5:3:100:5:176:-13.7017,0,-6.88519	1/1:8:0,8:0:0:8:280:-25.2759,-2.40824,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.67075	1/1:4:0,4:0:0:4:132:-12.1666,-1.20412,0	0/1:3:1,2:1:36:2:72:-5.8417,0,-2.68614	1/1:69:1,68:1:36:68:2300:-203.588,-19.7721,0	1/1:65:1,64:1:36:64:2198:-192.477,-15.9687,0	1/1:46:0,46:0:0:46:1535:-136.795,-13.8474,0	.:.:.:.:.:.:.:.	0/1:68:36,32:36:1265:32:1048:-72.3448,0,-90.9545	0/1:15:8,7:8:288:7:235:-16.8216,0,-21.7075	0/1:38:20,18:20:708:18:625:-44.3647,0,-52.2646	0/1:40:18,22:18:639:22:768:-54.7052,0,-45.0756	1/1:17:0,17:0:0:17:555:-49.6872,-5.11751,0	1/1:38:0,38:0:0:38:1302:-115.742,-11.4391,0	1/1:57:0,57:0:0:57:2020:-179.782,-17.1587,0	0/1:79:51,28:51:1786:28:979:-63.5415,0,-136.165	1/1:37:0,37:0:0:37:1306:-115.969,-11.1381,0	1/1:120:1,119:1:36:119:4096:-360.448,-32.5253,0	1/1:51:1,50:1:36:50:1730:-150.581,-11.804,0	0/1:5:3,2:3:108:2:62:-4.34355,0,-8.43069	1/1:47:1,46:1:36:46:1540:-133.691,-10.5592,0	1/1:14:0,14:0:0:14:482:-43.226,-4.21442,0	0/1:6:5,1:5:180:1:36:-1.77259,0,-14.6668	0/1:65:35,30:35:1228:30:1016:-71.3786,0,-90.4375	0/1:17:2,15:2:72:15:528:-42.1567,0,-0.897778	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.0205	1/1:36:0,36:0:0:36:1242:-110.449,-10.8371,0	0/1:50:35,15:35:1252:15:519:-31.1699,0,-97.0006	0/1:2:1,1:1:36:1:36:-2.97137,0,-2.95656	0/1:132:71,61:71:2517:61:2108:-147.376,0,-184.569	0/1:94:48,46:48:1687:46:1598:-113.747,0,-122.582	0/1:25:18,7:18:605:7:244:-14.4932,0,-45.9869	0/1:60:31,29:31:1095:29:1007:-71.9109,0,-80.2073	1/1:77:6,71:6:212:71:2472:-201.225,-4.78889,0	0/1:45:24,20:24:849:20:675:-46.7129,0,-62.6072	0/1:7:3,4:3:104:4:136:-10.1646,0,-7.47129	0/1:23:13,10:13:468:10:352:-24.6458,0,-35.2243	0/1:18:8,10:8:284:10:343:-25.4396,0,-20.2522	0/1:10:3,7:3:108:7:248:-19.2003,0,-6.92554	1/1:57:3,54:3:99:54:1870:-159.197,-9.56127,0	1/1:52:1,51:1:36:51:1780:-155.258,-12.0553,0	1/1:92:1,91:1:36:91:3168:-280.561,-26.596,0	1/1:115:0,115:0:0:115:4007:-354.934,-34.6185,0	0/1:67:33,34:33:1179:34:1176:-84.5932,0,-85.6244	1/1:61:1,60:1:36:60:2107:-183.946,-14.7646,0	0/1:5:3,2:3:108:2:63:-4.45709,0,-8.51612	1/1:78:0,78:0:0:78:2717:-241.906,-23.4803,0	0/1:83:39,44:39:1396:44:1479:-106.146,0,-100.118	1/1:80:3,77:3:104:77:2610:-222.025,-14.3988,0	1/1:46:0,46:0:0:46:1573:-140.198,-13.8474,0	0/1:29:14,15:14:504:15:510:-37.0662,0,-35.5932	1/1:26:0,26:0:0:26:885:-79.0404,-7.82678,0	0/1:58:24,34:24:836:34:1145:-84.5207,0,-57.4712	0/1:17:8,9:8:288:9:289:-20.876,0,-21.0158	1/1:29:0,29:0:0:29:1003:-89.3174,-8.72987,0	1/1:31:1,30:1:36:30:1064:-92.0875,-6.77322,0	1/1:18:0,18:0:0:18:610:-54.7093,-5.41854,0	0/1:43:19,24:19:662:24:801:-58.5683,0,-46.6866	0/1:24:18,6:18:627:6:207:-11.4264,0,-49.1086	1/1:112:0,112:0:0:112:3872:-343.694,-33.7154,0	1/1:43:1,42:1:36:42:1415:-122.631,-9.35112,0
chr05	16386101	.	T	G	112309	PASS	AB=0.505453;ABP=4.09964;AC=138;AF=0.758242;AN=182;AO=5471;CIGAR=1X;DP=7571;DPB=7571;DPRA=0;EPP=11883.1;EPPR=4539.22;GTI=1;LEN=1;MEANALT=1.08791;MQM=59.7384;MQMR=59.7382;NS=91;NUMALT=1;ODDS=2.52732;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194694;QR=74758;RO=2089;RPL=5471;RPP=11883.1;RPPR=4539.22;RPR=0;RUN=1;SAF=5471;SAP=11883.1;SAR=0;SRF=2089;SRP=4539.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:30,39:30:1059:39:1377:-103.448,0,-74.8237	1/1:70:1,69:1:36:69:2452:-217.335,-17.4738,0	0/1:119:65,54:65:2323:54:1932:-138.329,0,-173.501	1/1:165:0,165:0:0:165:5887:-529.602,-49.67,0	1/1:72:0,72:0:0:72:2543:-229.114,-21.6742,0	1/1:50:1,49:1:36:49:1751:-154.27,-11.4532,0	0/1:54:23,31:23:819:31:1077:-80.9785,0,-57.7713	1/1:100:1,99:1:36:99:3533:-314.578,-26.5047,0	0/1:109:56,53:56:2004:53:1893:-137.827,0,-147.812	1/1:67:0,67:0:0:67:2370:-213.511,-20.169,0	1/1:48:0,48:0:0:48:1682:-151.656,-14.4494,0	0/1:109:61,48:61:2179:48:1700:-120.471,0,-163.558	0/1:79:36,43:36:1288:43:1519:-113.204,0,-92.3314	0/1:42:21,21:21:734:21:735:-53.8281,0,-53.7301	1/1:59:0,59:0:0:59:2087:-188.085,-17.7608,0	1/1:41:0,41:0:0:41:1446:-130.434,-12.3422,0	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:24:0,24:0:0:24:860:-77.7195,-7.22472,0	0/1:86:47,38:47:1688:38:1359:-96.7014,0,-126.299	1/1:84:0,84:0:0:84:2959:-266.532,-25.2865,0	0/1:55:38,17:38:1360:17:612:-38.8568,0,-106.126	0/1:89:37,52:37:1328:52:1872:-141.944,0,-93.0306	0/1:43:13,30:13:468:30:1065:-83.1,0,-29.5154	1/1:80:0,80:0:0:80:2855:-257.183,-24.0824,0	1/1:158:1,157:1:36:157:5602:-500.645,-43.9645,0	0/1:186:81,105:81:2895:105:3745:-281.203,0,-204.054	0/1:35:20,15:20:720:15:532:-37.677,0,-54.5904	0/1:148:80,68:80:2872:68:2433:-174.67,0,-214.163	0/1:117:49,68:49:1752:68:2404:-181.385,0,-122.737	1/1:46:0,46:0:0:46:1616:-145.702,-13.8474,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:8:0,8:0:0:8:288:-26.265,-2.40824,0	0/1:8:1,6:1:36:6:216:-17.3237,0,-1.13137	1/1:172:1,171:1:36:171:6112:-546.523,-48.1789,0	1/1:53:0,53:0:0:53:1904:-171.634,-15.9546,0	1/1:40:0,40:0:0:40:1424:-128.452,-12.0412,0	.:.:.:.:.:.:.:.	0/1:1140:559,581:559:20019:581:20714:-1520.32,0,-1457.41	0/1:18:7,11:7:252:11:392:-30.1992,0,-17.608	0/1:74:32,41:32:1152:41:1459:-109.333,0,-81.7229	0/1:51:26,25:26:932:25:900:-65.9685,0,-68.844	1/1:48:0,48:0:0:48:1686:-151.465,-14.4494,0	1/1:109:0,108:0:0:108:3837:-345.168,-32.5112,0	1/1:89:0,89:0:0:89:3187:-287.007,-26.7917,0	0/1:130:65,64:65:2332:64:2277:-166.134,0,-171.06	1/1:76:0,76:0:0:76:2720:-245.032,-22.8783,0	1/1:49:0,49:0:0:49:1730:-155.978,-14.7505,0	1/1:60:0,60:0:0:60:2105:-189.717,-18.0618,0	.:.:.:.:.:.:.:.	1/1:204:0,204:0:0:204:7311:-657.998,-61.4101,0	1/1:41:0,39:0:0:39:1380:-124.138,-11.7402,0	.:.:.:.:.:.:.:.	0/1:121:55,66:55:1965:66:2356:-175.866,0,-140.687	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:4:1,3:1:36:3:108:-8.87063,0,-2.39415	0/1:12:8,4:8:279:4:144:-9.70126,0,-21.8352	1/1:71:0,71:0:0:71:2503:-225.511,-21.3731,0	0/1:69:41,28:41:1463:28:992:-68.8224,0,-111.192	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/1:96:35,58:35:1256:58:2060:-156.656,0,-84.9898	0/1:176:87,89:87:3128:89:3187:-234.069,0,-228.764	0/1:83:50,33:50:1792:33:1161:-79.7977,0,-136.568	0/1:74:26,48:26:928:48:1724:-133.169,0,-61.5588	1/1:94:0,94:0:0:94:3335:-300.319,-28.2968,0	0/1:109:74,35:74:2651:35:1213:-76.6518,0,-206.023	0/1:46:18,28:18:639:28:999:-76.3771,0,-43.9757	0/1:46:28,18:28:1004:18:640:-44.0773,0,-76.716	0/1:50:26,24:26:927:24:841:-60.9549,0,-68.6959	0/1:11:8,3:8:280:3:108:-6.76384,0,-22.228	1/1:150:0,150:0:0:150:5288:-475.906,-45.1545,0	1/1:68:0,68:0:0:68:2444:-220.213,-20.47,0	1/1:76:0,76:0:0:76:2687:-242.069,-22.8783,0	1/1:89:0,89:0:0:89:3188:-287.013,-26.7917,0	0/1:76:30,46:30:1076:46:1633:-124.365,0,-74.2746	1/1:51:1,50:1:36:50:1777:-156.561,-11.7569,0	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	1/1:106:1,105:1:36:105:3756:-334.619,-28.3109,0	0/1:57:28,29:28:999:29:1031:-75.9369,0,-73.0634	1/1:126:1,125:1:36:125:4459:-397.876,-34.3315,0	1/1:52:0,52:0:0:52:1856:-167.31,-15.6536,0	0/1:53:22,31:22:783:31:1086:-82.0462,0,-54.836	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	0/1:139:67,72:67:2408:72:2558:-188.618,0,-175.128	0/1:15:9,6:9:324:6:207:-14.4514,0,-24.988	1/1:75:0,74:0:0:74:2636:-237.125,-22.2762,0	1/1:54:0,54:0:0:54:1911:-172.257,-16.2556,0	1/1:32:0,32:0:0:32:1146:-103.44,-9.63296,0	0/1:106:50,56:50:1785:56:2008:-148.973,0,-129.019	0/1:88:59,29:59:2116:29:1023:-65.8841,0,-164.209	1/1:80:1,79:1:36:79:2832:-251.412,-20.4841,0	1/1:96:1,95:1:27:95:3395:-303.056,-26.1991,0
chr05	16386104	.	A	G	34666.1	PASS	AB=0.489187;ABP=7.33078;AC=44;AF=0.241758;AN=182;AO=2090;CIGAR=1X;DP=7725;DPB=7725;DPRA=1.4446;EPP=4541.39;EPPR=12234.9;GTI=1;LEN=1;MEANALT=1;MQM=59.7507;MQMR=59.7044;NS=91;NUMALT=1;ODDS=1.81541;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74634;QR=202012;RO=5633;RPL=2090;RPP=4541.39;RPPR=12234.9;RPR=0;RUN=1;SAF=2090;SAP=4541.39;SAR=0;SRF=5633;SRP=12234.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:38,31:38:1353:31:1116:-79.9701,0,-101.288	0/0:70:69,1:69:2464:1:36:0,-17.4738,-218.414	0/1:116:54,62:54:1940:62:2220:-165.14,0,-139.952	0/0:170:170,0:170:6116:0:0:0,-51.1751,-549.503	0/0:73:73,0:73:2609:0:0:0,-21.9752,-235.049	0/0:53:52,1:52:1872:1:36:0,-12.3563,-165.156	0/1:53:31,22:31:1108:22:792:-55.6464,0,-84.0682	0/0:106:105,1:105:3771:1:36:0,-28.3109,-335.984	0/1:111:53,58:53:1895:58:2080:-154.047,0,-137.401	0/0:71:71,0:71:2521:0:0:0,-21.3731,-227.049	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.713	0/1:105:50,55:50:1796:55:1968:-145.784,0,-129.814	0/1:80:46,34:46:1656:34:1207:-84.7434,0,-125.225	0/1:42:21,21:21:752:21:752:-55.356,0,-55.363	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.052	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.489	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5571	0/1:86:40,46:40:1440:46:1648:-122.72,0,-104.009	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.895	0/1:55:17,38:17:612:38:1343:-104.61,0,-38.8568	0/1:90:53,37:53:1878:37:1323:-92.2786,0,-142.184	0/1:44:31,13:31:1112:13:468:-29.2143,0,-87.0259	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.146	0/0:164:163,1:163:5809:1:36:0,-45.7706,-519.268	0/1:188:109,79:109:3916:79:2831:-198.321,0,-295.92	0/1:32:14,18:14:491:18:640:-48.294,0,-34.8882	0/1:150:69,81:69:2467:81:2891:-215.272,0,-177.128	0/1:119:72,47:72:2584:47:1672:-114.938,0,-196.976	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.52	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.265	0/1:9:7,2:7:252:2:72:-4.12499,0,-20.3197	0/0:178:177,1:177:6343:1:36:0,-49.9851,-567.302	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.993	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.771	.:.:.:.:.:.:.:.	0/1:1138:579,559:579:20812:559:19980:-1454.8,0,-1529.61	0/1:21:14,7:14:504:7:252:-16.705,0,-39.3741	0/1:76:40,36:40:1421:36:1284:-92.978,0,-105.304	0/1:53:26,27:26:936:27:968:-71.4804,0,-68.6049	0/0:51:51,0:51:1824:0:0:0,-15.3525,-163.249	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.864	0/0:95:94,0:94:3376:0:0:0,-28.2968,-303.584	0/1:133:67,66:67:2382:66:2334:-170.248,0,-174.588	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.472	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.569	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	.:.:.:.:.:.:.:.	0/0:207:207,0:207:7417:0:0:0,-62.3132,-667.533	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.17	.:.:.:.:.:.:.:.	0/1:121:67,54:67:2412:54:1936:-138.08,0,-180.902	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87063	0/1:13:4,9:4:144:9:311:-24.4103,0,-9.40023	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.398	0/1:70:29,41:29:1044:41:1433:-108.187,0,-73.2004	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:97:58,39:58:2075:39:1388:-96.019,0,-157.162	0/1:180:94,86:94:3380:86:3084:-223.6,0,-250.222	0/1:86:34,52:34:1220:52:1840:-139.98,0,-84.1898	0/1:74:47,27:47:1692:27:956:-64.0748,0,-130.291	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.146	0/1:109:35,74:35:1256:74:2644:-205.395,0,-80.5283	0/1:47:29,18:29:1044:18:640:-43.7349,0,-80.1264	0/1:47:18,29:18:648:29:1035:-79.2722,0,-44.4989	0/1:50:25,25:25:900:25:887:-65.0966,0,-66.2695	0/1:11:3,8:3:104:8:284:-22.592,0,-6.39148	0/0:157:156,0:156:5590:0:0:0,-46.9607,-502.831	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.971	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.954	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.136	0/1:78:48,30:48:1715:30:1072:-73.3115,0,-131.139	0/0:52:51,1:51:1836:1:36:0,-12.0579,-160.997	0/1:13:11,2:11:392:2:72:-2.92333,0,-31.7067	0/0:109:108,1:108:3872:1:36:0,-29.214,-345.008	0/1:62:33,29:33:1184:29:1044:-75.6086,0,-88.1974	0/0:130:130,0:130:4657:0:0:0,-39.1339,-419.279	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.81	0/1:54:32,22:32:1148:22:792:-55.3477,0,-87.2575	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.18	0/1:143:74,69:74:2664:69:2476:-180.041,0,-196.949	0/1:16:7,9:7:252:9:324:-24.687,0,-18.2125	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.352	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.745	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.226	0/1:106:56,50:56:2016:50:1784:-128.931,0,-149.693	0/1:88:29,59:29:1040:59:2107:-163.403,0,-67.419	0/0:81:81,0:81:2912:0:0:0,-24.3834,-261.936	0/0:99:97,2:97:3472:2:72:0,-22.9677,-305.848
chr05	16401768	.	A	G	91870.6	PASS	AB=0.464394;ABP=32.0817;AC=140;AF=0.752688;AN=186;AO=4358;CIGAR=1X;DP=5776;DPB=5776;DPRA=62.7717;EPP=9466.29;EPPR=3082.16;GTI=1;LEN=1;MEANALT=1;MQM=59.1306;MQMR=59.8173;NS=93;NUMALT=1;ODDS=3.28257;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155342;QR=50739;RO=1418;RPL=0;RPP=9466.29;RPPR=3082.16;RPR=4358;RUN=1;SAF=0;SAP=9466.29;SAR=4358;SRF=0;SRP=3082.16;SRR=1418;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:10,5:10:360:5:176:-11.6696,0,-28.2289	1/1:150:0,150:0:0:150:5338:-479.828,-45.1545,0	0/1:81:34,47:34:1211:47:1678:-126.761,0,-84.9039	1/1:136:0,136:0:0:136:4877:-436.37,-40.9401,0	1/1:46:0,46:0:0:46:1641:-147.806,-13.8474,0	1/1:34:0,34:0:0:34:1206:-108.75,-10.235,0	0/1:79:34,45:34:1205:45:1612:-121.561,0,-84.6537	1/1:105:0,105:0:0:105:3742:-336.406,-31.6082,0	0/1:57:21,36:21:756:36:1288:-98.9213,0,-51.2076	1/1:75:0,75:0:0:75:2665:-239.828,-22.5773,0	1/1:19:0,19:0:0:19:676:-60.9398,-5.71957,0	0/1:24:13,11:13:451:11:388:-28.0326,0,-33.695	0/1:26:16,10:16:576:10:351:-24.0952,0,-44.3473	0/1:28:15,13:15:536:13:468:-34.0288,0,-40.146	1/1:33:0,33:0:0:33:1180:-106.48,-9.93399,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:30:0,30:0:0:30:1062:-95.8878,-9.0309,0	1/1:15:0,15:0:0:15:525:-47.5758,-4.51545,0	1/1:8:0,8:0:0:8:284:-25.9029,-2.40824,0	0/1:126:60,66:60:2147:66:2345:-173.303,0,-155.544	1/1:111:0,111:0:0:111:3945:-355.172,-33.4143,0	0/1:109:71,38:71:2552:38:1348:-88.7683,0,-197.117	0/1:105:55,50:55:1964:50:1764:-127.425,0,-145.102	0/1:114:48,66:48:1697:66:2367:-178.822,0,-118.697	1/1:41:0,41:0:0:41:1476:-133.064,-12.3422,0	1/1:287:1,286:1:36:286:10225:-915.978,-82.7973,0	0/1:118:73,45:73:2620:45:1611:-109.545,0,-200.526	0/1:18:8,10:8:288:10:352:-26.595,0,-20.8489	0/1:135:84,51:84:3024:51:1827:-124.061,0,-231.737	0/1:144:87,57:87:3119:57:2012:-137.914,0,-237.106	1/1:94:0,94:0:0:94:3340:-300.216,-28.2968,0	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:3:0,3:0:0:3:108:-9.94097,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:101:0,101:0:0:101:3612:-325.092,-30.404,0	1/1:143:0,143:0:0:143:5063:-455.473,-43.0473,0	1/1:22:0,22:0:0:22:755:-68.1432,-6.62266,0	.:.:.:.:.:.:.:.	0/1:84:43,41:43:1544:41:1463:-106.453,0,-113.967	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:148:85,63:85:3047:63:2255:-158.495,0,-229.87	0/1:28:13,15:13:464:15:540:-40.4939,0,-33.6687	1/1:22:0,22:0:0:22:775:-70.0688,-6.62266,0	1/1:91:0,91:0:0:91:3249:-292.496,-27.3937,0	1/1:71:0,71:0:0:71:2506:-225.568,-21.3731,0	0/1:117:69,48:69:2480:48:1701:-118.081,0,-188.231	1/1:90:0,90:0:0:90:3213:-289.276,-27.0927,0	1/1:60:0,60:0:0:60:2137:-192.298,-18.0618,0	1/1:134:0,134:0:0:134:4784:-430.494,-40.338,0	0/1:9:3,6:3:108:6:201:-15.7078,0,-7.3659	1/1:94:0,94:0:0:94:3357:-302.197,-28.2968,0	1/1:31:0,31:0:0:31:1116:-100.739,-9.33193,0	0/1:11:3,8:3:108:8:288:-22.683,0,-6.76384	0/1:83:48,35:48:1728:35:1252:-87.9547,0,-130.82	1/1:47:0,47:0:0:47:1665:-150.122,-14.1484,0	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:31:0,31:0:0:31:1112:-99.8107,-9.33193,0	0/1:60:31,29:31:1112:29:1036:-75.4481,0,-82.3295	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:152:85,67:85:3041:67:2368:-167.6,0,-228.162	0/1:161:90,71:90:3203:71:2539:-179.92,0,-240.021	0/1:53:24,29:24:864:29:1040:-77.7246,0,-62.128	0/1:49:23,26:23:809:26:932:-69.3709,0,-58.3778	1/1:136:0,136:0:0:136:4848:-436.178,-40.9401,0	0/1:75:46,29:46:1652:29:1025:-69.983,0,-126.368	0/1:10:7,3:7:243:3:104:-6.69251,0,-19.1972	0/1:49:22,27:22:776:27:963:-72.199,0,-55.4108	0/1:48:23,25:23:819:25:900:-66.8634,0,-59.5821	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:61:0,61:0:0:61:2173:-195.676,-18.3628,0	1/1:28:0,28:0:0:28:1000:-90.2426,-8.42884,0	1/1:72:0,72:0:0:72:2584:-232.61,-21.6742,0	1/1:100:0,100:0:0:100:3576:-321.615,-30.103,0	0/1:52:23,29:23:828:29:1029:-77.2447,0,-59.1887	1/1:60:0,60:0:0:60:2152:-193.685,-18.0618,0	0/1:10:4,6:4:144:6:216:-16.7798,0,-10.3024	1/1:78:2,76:2:72:76:2708:-237.241,-16.7904,0	0/1:75:49,26:49:1756:26:932:-61.619,0,-135.746	1/1:145:0,145:0:0:145:5165:-464.413,-43.6494,0	1/1:73:0,73:0:0:73:2596:-233.856,-21.9752,0	0/1:17:9,8:9:324:8:280:-20.4218,0,-24.3883	1/1:42:0,42:0:0:42:1500:-135.24,-12.6433,0	0/1:61:27,34:27:959:34:1220:-91.7027,0,-68.2401	0/1:28:15,13:15:536:13:468:-34.0304,0,-40.146	1/1:40:0,40:0:0:40:1421:-128.075,-12.0412,0	1/1:31:0,31:0:0:31:1103:-99.5389,-9.33193,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	1/1:67:0,67:0:0:67:2404:-216.551,-20.169,0	1/1:44:0,44:0:0:44:1559:-140.541,-13.2453,0
chr05	16420394	.	A	T	34498.2	PASS	AB=0.372482;ABP=914.57;AC=46;AF=0.244681;AN=188;AO=2418;CIGAR=1X;DP=15708;DPB=15708;DPRA=0.90054;EPP=5253.63;EPPR=28846.7;GTI=8;LEN=1;MEANALT=1;MQM=54.0269;MQMR=54.3923;NS=94;NUMALT=1;ODDS=4.56728;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86434;QR=474344;RO=13287;RPL=0;RPP=5253.63;RPPR=580.017;RPR=2418;RUN=1;SAF=0;SAP=5253.63;SAR=2418;SRF=5705;SRP=578.789;SRR=7582;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:135:99,36:99:3536:36:1283:-74.4259,0,-275.212	0/0:205:205,0:205:7313:0:0:0,-61.7111,-656.163	0/1:169:123,46:123:4384:46:1637:-95.9552,0,-342.511	0/0:279:278,1:278:9918:1:36:0,-80.3891,-883.528	0/0:203:203,0:203:7230:0:0:0,-61.1091,-647.513	0/0:134:134,0:134:4779:0:0:0,-40.338,-428.115	0/1:202:120,82:120:4260:82:2934:-202.666,0,-320.507	0/0:265:265,0:265:9439:0:0:0,-79.7729,-845.847	0/1:183:136,47:136:4880:47:1654:-93.3975,0,-382.199	0/0:193:192,1:192:6844:1:36:0,-54.5031,-610.291	0/0:157:156,0:156:5569:0:0:0,-46.9607,-498.858	0/1:150:104,46:104:3727:46:1641:-101.827,0,-288.708	0/1:126:84,42:84:2985:42:1508:-97.1967,0,-229.704	0/1:150:79,71:79:2798:71:2516:-180.862,0,-206.223	0/0:132:132,0:132:4715:0:0:0,-39.736,-422.701	0/0:114:114,0:114:4056:0:0:0,-34.3174,-362.821	0/0:135:135,0:135:4839:0:0:0,-40.639,-434.899	0/0:75:75,0:75:2688:0:0:0,-22.5772,-241.946	0/0:94:93,1:93:3310:1:36:0,-24.6985,-294.056	0/1:272:196,76:196:6968:76:2728:-163.366,0,-542.215	0/0:310:310,0:310:11038:0:0:0,-93.3193,-986.538	0/1:76:38,38:38:1340:38:1360:-99.5131,0,-97.3365	0/1:192:118,74:118:4220:74:2630:-178.7,0,-319.427	0/1:204:130,74:130:4664:74:2660:-177.641,0,-356.603	0/0:189:189,0:189:6755:0:0:0,-56.8947,-602.874	0/0:458:455,3:455:16192:3:108:0,-127.798,-1439.41	0/1:273:193,80:193:6882:80:2845:-173.368,0,-534.301	0/1:64:37,27:37:1320:27:972:-68.2786,0,-99.2554	0/1:356:239,117:239:8531:117:4179:-268.198,0,-654.303	0/1:182:104,78:104:3723:78:2796:-196.58,0,-279.106	0/0:221:221,0:221:7895:0:0:0,-66.5276,-708.003	0/1:5:3,2:3:108:2:72:-5.32188,0,-8.51129	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.3495	0/1:4:2,2:2:72:2:72:-5.58825,0,-5.6326	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1561	0/1:7:4,3:4:144:3:108:-7.94263,0,-11.1703	0/0:425:425,0:425:15184:0:0:0,-127.938,-1360.33	0/0:181:181,0:181:6463:0:0:0,-54.4864,-579.294	0/0:160:160,0:160:5694:0:0:0,-48.1648,-511.108	0/1:10:9,1:9:320:1:36:-0.470395,0,-25.903	0/1:226:159,67:159:5699:67:2397:-147.64,0,-442.164	0/1:72:54,18:54:1928:18:648:-36.769,0,-151.413	0/1:272:148,124:148:5320:124:4441:-317.088,0,-393.05	0/1:204:104,100:104:3719:100:3579:-260.341,0,-272.305	0/0:135:135,0:135:4844:0:0:0,-40.639,-434.337	0/0:246:246,0:246:8788:0:0:0,-74.0534,-783.911	0/0:210:210,0:210:7519:0:0:0,-63.2163,-674.968	0/1:235:154,81:154:5513:81:2893:-189.02,0,-423.082	0/0:175:175,0:175:6239:0:0:0,-52.6802,-557.914	0/0:189:189,0:189:6717:0:0:0,-56.8947,-602.599	0/0:219:219,0:219:7836:0:0:0,-65.9256,-701.865	0/1:13:7,6:7:252:6:216:-15.6072,0,-19.1156	0/0:278:277,0:277:9927:0:0:0,-83.3853,-889.966	0/0:96:96,0:96:3418:0:0:0,-28.8989,-305.931	0/1:11:3,8:3:108:8:288:-22.8763,0,-6.74563	0/1:150:93,57:93:3329:57:2048:-139.043,0,-250.361	0/0:116:115,0:115:4109:0:0:0,-34.6184,-367.175	0/1:5:2,3:2:72:3:108:-8.56572,0,-5.30168	0/1:18:13,5:13:453:5:180:-11.1274,0,-35.623	0/0:191:190,1:190:6781:1:36:0,-53.9036,-602.155	0/1:184:115,69:115:4093:69:2461:-165.934,0,-311.536	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.98707	0/1:200:122,78:122:4348:78:2788:-190.734,0,-329.496	0/1:232:153,79:153:5444:79:2840:-185.634,0,-418.056	0/1:124:66,58:66:2345:58:2084:-148.829,0,-173.157	0/1:93:63,30:63:2245:30:1080:-69.4426,0,-173.315	0/0:303:303,0:303:10821:0:0:0,-91.2121,-969.474	0/1:150:69,81:69:2461:81:2912:-216.8,0,-175.545	0/1:84:58,26:58:2063:26:932:-58.4317,0,-160.177	0/1:114:55,59:55:1957:59:2109:-154.917,0,-141.47	0/1:141:70,71:70:2512:71:2552:-187.087,0,-182.935	0/1:42:32,10:32:1137:10:341:-18.3117,0,-89.2041	0/0:201:201,0:201:7153:0:0:0,-60.507,-640.231	0/0:176:176,0:176:6303:0:0:0,-52.9813,-564.46	0/0:467:466,1:466:16608:1:21:0,-138.481,-1486.23	0/0:286:286,0:286:10232:0:0:0,-86.0946,-915.813	0/1:182:105,77:105:3761:77:2753:-191.677,0,-282.752	0/0:158:158,0:158:5629:0:0:0,-47.5627,-505.267	0/0:9:8,1:8:288:1:21:0,-0.609612,-24.1499	0/0:154:153,1:153:5476:1:36:0,-42.7654,-487.686	0/1:203:134,69:134:4783:69:2476:-160.273,0,-367.977	0/0:408:406,2:406:14540:2:72:0,-115.988,-1293.91	0/0:175:175,0:175:6238:0:0:0,-52.6802,-559.69	0/1:122:85,37:85:3048:37:1320:-82.1741,0,-236.848	0/0:172:172,0:172:6125:0:0:0,-51.7772,-549.763	0/1:265:175,90:175:6267:90:3217:-209.425,0,-481.861	0/1:58:35,23:35:1256:23:820:-56.4732,0,-95.6252	0/0:167:167,0:167:5966:0:0:0,-50.272,-535.607	0/0:170:170,0:170:6086:0:0:0,-51.1751,-545.731	0/0:94:94,0:94:3338:0:0:0,-28.2968,-299.631	0/1:162:94,68:94:3348:68:2440:-170.144,0,-251.785	0/1:132:64,68:64:2292:68:2421:-177.945,0,-165.754	0/0:248:248,0:248:8865:0:0:0,-74.6554,-793.764	0/0:251:249,2:249:8886:2:57:0,-70.432,-788.807
chr05	16420409	.	A	G	354011	PASS	AB=0.623076;ABP=849.141;AC=142;AF=0.755319;AN=188;AO=13196;CIGAR=1X;DP=15636;DPB=15636;DPRA=0;EPP=28597;EPPR=5290.55;GTI=8;LEN=1;MEANALT=1.05319;MQM=54.5442;MQMR=54.0903;NS=94;NUMALT=1;ODDS=3.53548;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=464435;QR=87341;RO=2435;RPL=5526;RPP=759.428;RPPR=5273.19;RPR=7670;RUN=1;SAF=5519;SAP=769.339;SAR=7677;SRF=2;SRP=5273.19;SRR=2433;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:129:36,93:36:1292:93:3214:-249.259,0,-76.8004	1/1:205:0,205:0:0:205:7268:-652.528,-61.7112,0	0/1:166:47,119:47:1692:119:4170:-324.368,0,-101.444	1/1:274:0,273:0:0:273:9634:-862.402,-82.1812,0	1/1:201:0,201:0:0:201:7017:-628.839,-60.507,0	1/1:131:0,131:0:0:131:4619:-414.298,-39.4349,0	0/1:201:83,118:83:2976:118:4160:-312.357,0,-206.772	1/1:265:0,265:0:0:265:9297:-834.076,-79.773,0	0/1:177:44,133:44:1576:133:4660:-364.496,0,-88.3124	1/1:195:1,194:1:36:194:6890:-614.891,-55.1052,0	1/1:158:1,157:1:36:157:5545:-494.009,-43.9645,0	0/1:147:46,101:46:1647:101:3509:-270.467,0,-103.271	0/1:122:42,80:42:1508:80:2817:-216.416,0,-98.4008	0/1:153:72,80:72:2575:80:2798:-205.777,0,-185.316	1/1:135:0,135:0:0:135:4725:-423.896,-40.6391,0	1/1:111:0,111:0:0:111:3868:-345.994,-33.4143,0	1/1:134:0,134:0:0:134:4719:-424.156,-40.338,0	1/1:76:0,76:0:0:76:2692:-242.326,-22.8783,0	1/1:95:1,94:1:36:94:3251:-288.829,-24.9996,0	0/1:270:77,193:77:2768:193:6824:-530.237,0,-167.599	1/1:301:0,301:0:0:301:10577:-946.088,-90.61,0	0/1:75:37,38:37:1324:38:1352:-98.7604,0,-96.6163	0/1:194:74,120:74:2656:120:4242:-320.814,0,-180.519	0/1:203:74,129:74:2660:129:4549:-347.082,0,-177.942	1/1:186:0,186:0:0:186:6546:-584.614,-55.9916,0	1/1:456:1,455:1:36:455:16061:-1434.26,-133.672,0	0/1:271:78,193:78:2804:193:6807:-528.389,0,-170.224	0/1:64:27,37:27:972:37:1294:-96.9634,0,-68.2786	0/1:353:118,235:118:4240:235:8297:-634.382,0,-274.484	0/1:182:78,104:78:2792:104:3678:-275.199,0,-196.209	1/1:227:0,227:0:0:227:7997:-717.465,-68.3338,0	0/1:5:2,3:2:72:3:108:-8.51129,0,-5.32188	1/1:22:0,22:0:0:22:779:-70.1928,-6.62266,0	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.22694	1/1:4:0,4:0:0:4:144:-13.2845,-1.20412,0	0/1:7:3,4:3:108:4:144:-11.1703,0,-7.94263	1/1:426:0,426:0:0:426:14932:-1338.86,-128.239,0	1/1:183:0,182:0:0:182:6435:-576.814,-54.7875,0	1/1:159:0,159:0:0:159:5573:-500.975,-47.8638,0	1/1:9:0,9:0:0:9:311:-28.1196,-2.70927,0	0/1:223:69,154:69:2484:154:5433:-419.81,0,-156.237	0/1:73:18,55:18:648:55:1935:-151.671,0,-36.4679	0/1:271:128,143:128:4589:143:5087:-374.325,0,-330.565	0/1:202:101,101:101:3624:101:3566:-259.597,0,-264.983	1/1:131:0,131:0:0:131:4640:-416.597,-39.4349,0	1/1:238:0,238:0:0:238:8371:-747.266,-71.6451,0	1/1:211:0,211:0:0:211:7485:-672.36,-63.5173,0	0/1:235:83,152:83:2979:152:5391:-412.512,0,-196.209	1/1:171:0,171:0:0:171:6072:-543.031,-51.4761,0	1/1:189:2,187:2:72:187:6614:-586.67,-50.0579,0	1/1:217:0,217:0:0:217:7626:-683.392,-65.3235,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.6072	1/1:268:0,268:0:0:268:9460:-848.886,-80.676,0	1/1:97:0,97:0:0:97:3396:-304.77,-29.1999,0	0/1:11:8,3:8:284:3:104:-6.37327,0,-22.5186	0/1:146:58,88:58:2076:88:3123:-234.294,0,-142.884	1/1:114:0,114:0:0:114:4002:-358.517,-34.3174,0	0/1:6:3,3:3:108:3:104:-7.85529,0,-8.26469	0/1:18:5,13:5:176:13:464:-36.5933,0,-10.7618	1/1:193:1,192:1:36:192:6744:-599.122,-54.5056,0	0/1:188:71,117:71:2534:117:4120:-312.92,0,-171.291	1/1:3:0,3:0:0:3:104:-9.6321,-0.90309,0	0/1:198:77,121:77:2764:121:4310:-326.76,0,-189.143	0/1:232:82,150:82:2952:150:5317:-406.861,0,-195.703	0/1:124:58,66:58:2084:66:2355:-174.1,0,-148.798	0/1:93:31,62:31:1097:62:2187:-168.417,0,-70.9709	1/1:306:1,305:1:36:305:10739:-958.861,-88.5169,0	0/1:149:80,69:80:2876:69:2371:-167.992,0,-213.865	0/1:84:27,57:27:959:57:2003:-154.777,0,-60.914	0/1:113:59,54:59:2120:54:1879:-134.824,0,-156.207	0/1:142:71,71:71:2544:71:2529:-184.42,0,-186.068	0/1:41:9,32:9:324:32:1120:-88.1338,0,-17.0994	1/1:189:0,189:0:0:189:6631:-593.39,-56.8947,0	1/1:173:0,173:0:0:173:6066:-543.312,-52.0782,0	1/1:469:0,469:0:0:469:16608:-1489.35,-141.183,0	1/1:287:0,286:0:0:286:10109:-905.459,-86.0946,0	0/1:182:76,105:76:2724:105:3695:-276.831,0,-189.503	1/1:155:0,155:0:0:155:5522:-495.736,-46.6597,0	0/1:9:1,8:1:36:8:288:-23.5403,0,-0.879958	1/1:155:1,154:1:36:154:5404:-481.26,-43.0665,0	0/1:197:69,128:69:2461:128:4489:-343.733,0,-160.756	1/1:404:2,402:2:72:402:14091:-1255.23,-114.784,0	1/1:178:0,178:0:0:178:6159:-552.9,-53.5833,0	0/1:125:38,87:38:1364:87:3050:-236.26,0,-85.1765	1/1:179:0,179:0:0:179:6317:-567.302,-53.8844,0	0/1:281:97,184:97:3480:184:6398:-489.328,0,-228.278	0/1:57:24,33:24:864:33:1171:-88.3162,0,-60.454	1/1:161:0,161:0:0:161:5614:-504.503,-48.4658,0	1/1:174:0,174:0:0:174:6101:-547.321,-52.3792,0	1/1:91:0,91:0:0:91:3191:-286.53,-27.3937,0	0/1:165:66,99:66:2372:99:3441:-259.395,0,-163.148	0/1:130:67,63:67:2404:63:2203:-158.499,0,-177.035	1/1:249:0,249:0:0:249:8759:-785.02,-74.9565,0	1/1:250:2,248:2:72:248:8650:-766.25,-68.4232,0
chr05	16839818	.	TGC	TGT,AGT	193158	PASS	AB=0.437768,0.558798;ABP=159.766,142.946;AC=139,49;AF=0.739362,0.260638;AN=188;AO=6313,2630;CIGAR=2M1X,1X1M1X;DP=8964;DPB=8964;DPRA=0,1.13118;EPP=13297.8,5422.48;EPPR=16.0391;GTI=2;LEN=1,3;MEANALT=1.74468,2.2;MQM=59.9465,59.4798;MQMR=60;NS=94;NUMALT=2;ODDS=2.62352;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=224655,92218;QR=214;RO=6;RPL=6265,2596;RPP=13297.8,5422.48;RPPR=16.0391;RPR=48,34;RUN=1,1;SAF=0,0;SAP=13711.5,5713.98;SAR=6313,2630;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,18,21:0:0:18,21:648,725:-112.122,-59.2417,-53.8232,-53.2333,0,-46.9117	1/1:82:0,81,0:0:0:81,0:2824,0:-254.185,-24.3834,0,-254.185,-24.3834,-254.185	1/2:236:1,76,159:1:36:76,159:2694,5656:-677.058,-457.893,-437.952,-216.524,0,-171.597	1/1:213:0,213,0:0:0:213,0:7576,0:-681.872,-64.1194,0,-681.872,-64.1194,-681.872	1/1:59:0,58,1:0:0:58,1:2037,36:-183.238,-17.4597,0,-180.3,-14.1625,-179.999	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/2:170:0,98,72:0:0:98,72:3516,2521:-492.233,-205.438,-175.937,-287.148,0,-265.474	1/1:117:1,116,0:1:36:116,0:4140,0:-369.187,-31.6222,0,-369.488,-34.9195,-372.425	1/2:92:0,34,58:0:0:34,58:1220,2036:-265.562,-166.046,-155.811,-99.8718,0,-82.412	1/1:72:0,71,0:0:0:71,0:2494,0:-224.301,-21.3731,0,-224.301,-21.3731,-224.301	1/1:24:0,24,0:0:0:24,0:847,0:-76.5487,-7.22472,0,-76.5487,-7.22472,-76.5487	1/2:63:0,31,32:0:0:31,32:1112,1126:-182.715,-92.0106,-82.6786,-91.0594,0,-81.4265	1/2:58:1,23,33:1:36:23,33:828,1162:-158.915,-91.652,-87.6659,-64.6232,0,-57.6266	1/2:47:0,22,25:0:0:22,25:788,881:-136.342,-72.0753,-65.4526,-64.6221,0,-57.0964	1/1:53:0,53,0:0:0:53,0:1904,0:-171.638,-15.9546,0,-171.638,-15.9546,-171.638	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/1:47:0,47,0:0:0:47,0:1684,0:-151.847,-14.1484,0,-151.847,-14.1484,-151.847	1/1:49:0,49,0:0:0:49,0:1729,0:-155.893,-14.7505,0,-155.893,-14.7505,-155.893	1/1:23:0,23,0:0:0:23,0:813,0:-73.4891,-6.92369,0,-73.4891,-6.92369,-73.4891	1/2:219:0,120,99:0:0:120,99:4288,3494:-634.475,-284.855,-248.731,-349.975,0,-320.173	1/1:120:0,120,0:0:0:120,0:4255,0:-383.117,-36.1236,0,-383.117,-36.1236,-383.117	1/2:219:1,72,146:1:36:72,146:2561,5099:-620.074,-411.663,-392.927,-205.768,0,-164.755	1/2:98:0,48,50:0:0:48,50:1684,1756:-280.243,-143.199,-128.75,-137.394,0,-122.343	1/2:134:1,68,65:1:34:68,65:2432,2301:-382.648,-184.639,-166.927,-195.568,0,-178.759	1/1:91:0,91,0:0:0:91,0:3244,0:-292.183,-27.3937,0,-292.183,-27.3937,-292.183	1/1:273:0,269,4:0:0:269,4:9537,128:-857.961,-80.9771,0,-847.652,-70.3478,-846.448	1/2:204:0,95,108:0:0:95,108:3404,3770:-583.722,-306.099,-277.501,-277.72,0,-245.209	1/2:31:0,13,17:0:0:13,17:464,606:-87.1809,-49.3533,-45.4399,-37.8245,0,-32.707	1/2:328:0,159,168:0:0:159,168:5635,5896:-938.811,-479.763,-431.899,-459.041,0,-408.468	1/2:132:0,56,76:0:0:56,76:1992,2670:-379.959,-217.629,-200.771,-162.684,0,-139.806	1/1:101:0,101,0:0:0:101,0:3598,0:-324.028,-30.404,0,-324.028,-30.404,-324.028	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/2:14:0,6,8:0:0:6,8:208,278:-39.8541,-22.9481,-21.1419,-17.2529,0,-14.8447	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:17:0,4,13:0:0:4,13:140,455:-48.76,-37.3694,-36.1653,-11.7405,0,-7.82707	1/1:151:0,150,0:0:0:150,0:5356,0:-481.915,-45.1545,0,-481.915,-45.1545,-481.915	1/1:214:0,213,1:0:0:213,1:7595,36:-683.231,-64.1194,0,-680.304,-60.8339,-680.003	1/1:38:0,38,0:0:0:38,0:1356,0:-122.338,-11.4391,0,-122.338,-11.4391,-122.338	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:177:0,85,92:0:0:85,92:3033,3272:-514.155,-266.9,-241.312,-247.611,0,-219.917	1/2:37:0,15,22:0:0:15,22:540,746:-104.898,-60.8287,-56.3132,-44.4211,0,-37.7984	1/2:191:0,75,114:0:0:75,114:2677,4006:-544.094,-325.852,-303.274,-218.277,0,-183.959	1/2:57:0,21,36:0:0:21,36:742,1285:-165.529,-105.102,-98.7804,-60.7813,0,-49.9442	1/1:51:0,51,0:0:0:51,0:1828,0:-164.798,-15.3525,0,-164.798,-15.3525,-164.798	1/1:141:0,141,0:0:0:141,0:5018,0:-451.749,-42.4452,0,-451.749,-42.4452,-451.749	1/1:135:0,135,0:0:0:135,0:4754,0:-428.005,-40.6391,0,-428.005,-40.6391,-428.005	1/2:198:0,77,121:0:0:77,121:2719,4239:-566.537,-345.125,-321.945,-221.764,0,-185.339	1/1:126:0,125,0:0:0:125,0:4424,0:-398.099,-37.6288,0,-398.099,-37.6288,-398.099	1/1:92:0,92,0:0:0:92,0:3285,0:-295.865,-27.6948,0,-295.865,-27.6948,-295.865	1/1:227:0,227,0:0:0:227,0:8098,0:-728.837,-68.3338,0,-728.837,-68.3338,-728.837	1/2:14:0,5,9:0:0:5,9:180,313:-40.4873,-25.7958,-24.2907,-15.0469,0,-12.3376	1/1:133:0,133,0:0:0:133,0:4764,0:-428.861,-40.037,0,-428.861,-40.037,-428.861	1/1:49:0,49,0:0:0:49,0:1729,0:-155.882,-14.7505,0,-155.882,-14.7505,-155.882	1/2:33:0,12,21:0:0:12,21:432,711:-93.2362,-57.9818,-54.3694,-35.6065,0,-29.2848	1/2:137:0,62,73:0:0:62,73:2183,2567:-386.472,-208.756,-190.092,-177.746,0,-155.771	1/1:46:0,45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chr05	17001739	.	ACGCC	ATGCT,ACGCT	156825	PASS	AB=0.518519,0.474946;ABP=13.9481,23.0314;AC=135,51;AF=0.725806,0.274194;AN=186;AO=5638,1783;CIGAR=1M1X2M1X,4M1X;DP=7473;DPB=7473.8;DPRA=13.0772,0.944084;EPP=11926.5,3796.97;EPPR=3.0103;GTI=3;LEN=5,1;MEANALT=2.03333,2.31481;MQM=53.936,59.7128;MQMR=60;NS=93;NUMALT=2;ODDS=0.908213;PAIRED=0,0;PAIREDR=0;PAO=0.75,0.75;PQA=27,27;PQR=27;PRO=0.75;QA=197662,62294;QR=70;RO=2;RPL=5601,1774;RPP=11926.5,3796.97;RPPR=3.0103;RPR=37,9;RUN=1,1;SAF=0,0;SAP=12245.8,3874.75;SAR=5638,1783;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:100:0,53,47:0:0:53,47:1873,1635:-285.409,-133.256,-117.301,-152.503,0,-138.355	1/1:88:0,87,0:0:0:87,0:3036,0:-271.882,-26.1896,0,-271.882,-26.1896,-271.882	1/2:238:1,117,117:1:34:117,117:4124,4099:-665.371,-330.807,-298.344,-332.175,0,-299.712	1/1:170:0,167,0:0:0:167,0:5877,0:-527.953,-50.272,0,-527.953,-50.272,-527.953	1/1:46:0,44,2:0:0:44,2:1507,42:-135.363,-13.2453,0,-132.191,-9.85748,-131.589	1/1:44:0,43,0:0:0:43,0:1531,0:-136.869,-12.9443,0,-136.869,-12.9443,-136.869	1/2:38:0,18,20:0:0:18,20:621,701:-107.664,-57.3861,-51.9676,-50.6251,0,-44.6045	1/1:88:0,88,0:0:0:88,0:3082,0:-276.28,-26.4906,0,-276.28,-26.4906,-276.28	1/2:103:0,44,57:0:0:44,57:1537,2021:-288.429,-164.43,-151.185,-124.108,0,-106.949	1/1:75:0,74,0:0:0:74,0:2600,0:-233.699,-22.2762,0,-233.699,-22.2762,-233.699	1/1:39:0,39,0:0:0:39,0:1356,0:-121.874,-11.7402,0,-121.874,-11.7402,-121.874	1/2:108:0,70,38:0:0:70,38:2469,1334:-308.981,-108.901,-87.8293,-200.43,0,-188.991	1/2:64:0,40,22:0:0:40,22:1395,765:-175.297,-62.2201,-50.1789,-113.109,0,-106.487	1/2:30:0,17,12:0:0:17,12:600,432:-83.7597,-35.2623,-30.1448,-48.5068,0,-44.8945	1/1:73:0,73,0:0:0:73,0:2564,0:-230.369,-21.9752,0,-230.369,-21.9752,-230.369	1/1:45:0,45,0:0:0:45,0:1595,0:-143.38,-13.5464,0,-143.38,-13.5464,-143.38	1/1:31:0,31,0:0:0:31,0:1053,0:-94.6316,-9.33193,0,-94.6316,-9.33193,-94.6316	1/1:29:0,29,0:0:0:29,0:1029,0:-92.6477,-8.72987,0,-92.6477,-8.72987,-92.6477	1/1:34:0,33,0:0:0:33,0:1151,0:-103.117,-9.93399,0,-103.117,-9.93399,-103.117	1/2:179:0,94,85:0:0:94,85:3295,3022:-514.441,-246.604,-218.308,-268.189,0,-242.601	1/1:162:0,162,0:0:0:162,0:5730,0:-514.657,-48.7669,0,-514.657,-48.7669,-514.657	1/2:108:0,39,68:0:0:39,68:1371,2429:-309.737,-198.182,-186.442,-111.695,0,-91.2246	1/2:80:0,39,40:0:0:39,40:1380,1372:-223.695,-111.367,-99.6266,-112.318,0,-100.277	1/2:74:0,39,35:0:0:39,35:1367,1252:-213.186,-102.444,-90.7042,-111.095,0,-100.559	1/1:122:0,119,1:0:0:119,1:4121,36:-369.284,-35.8226,0,-366.346,-32.8477,-366.045	1/1:160:0,160,0:0:0:160,0:5627,0:-505.941,-48.1648,0,-505.941,-48.1648,-505.941	1/2:451:0,214,236:0:0:214,236:7489,8085:-1263.45,-656.163,-591.743,-607.277,0,-536.234	1/2:31:0,19,12:0:0:19,12:666,432:-89.7225,-35.6088,-29.8893,-54.4697,0,-50.8573	1/2:261:0,134,126:0:0:134,126:4674,4343:-732.112,-352.831,-312.493,-379.356,0,-341.427	1/2:80:0,44,36:0:0:44,36:1561,1281:-231.332,-104.754,-91.5089,-126.932,0,-116.095	1/1:75:0,74,0:0:0:74,0:2608,0:-234.088,-22.2762,0,-234.088,-22.2762,-234.088	2/2:11:0,0,11:0:0:0,11:0,392:-35.6108,-35.6108,-35.6108,-3.31133,-3.31133,0	1/1:14:0,14,0:0:0:14,0:495,0:-44.8181,-4.21442,0,-44.8181,-4.21442,-44.8181	1/2:2:0,1,1:0:0:1,1:36,36:-6.03452,-3.29724,-2.99621,-3.08657,0,-2.78554	1/1:3:0,3,0:0:0:3,0:104,0:-9.67075,-0.90309,0,-9.67075,-0.90309,-9.67075	1/2:13:0,11,2:0:0:11,2:395,57:-37.0071,-4.81125,-1.49992,-32.492,0,-31.89	1/1:209:0,206,0:0:0:206,0:7235,0:-650.336,-62.0122,0,-650.336,-62.0122,-650.336	1/1:46:0,46,0:0:0:46,0:1606,0:-144.065,-13.8474,0,-144.065,-13.8474,-144.065	1/1:61:0,61,0:0:0:61,0:2133,0:-191.37,-18.3628,0,-191.37,-18.3628,-191.37	.:.:.:.:.:.:.:.	1/2:86:0,38,48:0:0:38,48:1301,1679:-242.361,-136.909,-125.47,-105.797,0,-91.348	1/2:22:0,12,10:0:0:12,10:419,360:-63.7398,-29.734,-26.1216,-34.3605,0,-31.3502	1/2:157:0,75,82:0:0:75,82:2627,2869:-447.177,-233.743,-211.166,-213.783,0,-189.099	1/2:54:0,31,23:0:0:31,23:1080,809:-153.833,-66.2046,-56.8727,-87.978,0,-81.0543	1/1:61:0,60,0:0:0:60,0:2119,0:-190.475,-18.0618,0,-190.475,-18.0618,-190.475	1/1:56:0,55,0:0:0:55,0:1946,0:-174.924,-16.5567,0,-174.924,-16.5567,-174.924	1/1:108:0,107,0:0:0:107,0:3742,0:-335.13,-32.2102,0,-335.13,-32.2102,-335.13	1/2:132:0,49,83:0:0:49,83:1701,2814:-366.349,-228.502,-213.751,-138.19,0,-113.205	1/1:97:0,97,0:0:0:97,0:3424,0:-308.074,-29.1999,0,-308.074,-29.1999,-308.074	1/1:90:0,89,1:0:0:89,1:3120,36:-280.243,-26.7917,0,-277.305,-23.4944,-277.004	1/1:71:0,71,0:0:0:71,0:2475,0:-222.752,-21.3731,0,-222.752,-21.3731,-222.752	1/2:7:0,4,3:0:0:4,3:144,108:-20.9123,-9.17208,-7.96796,-12.0999,0,-11.1968	1/1:111:0,110,0:0:0:110,0:3928,0:-351.899,-33.1133,0,-351.899,-33.1133,-351.899	1/1:24:0,23,1:0:0:23,1:798,36:-71.7372,-6.92369,0,-68.7993,-3.62645,-68.4982	1/2:9:0,2,7:0:0:2,7:60,238:-24.4216,-19.6429,-19.0409,-5.08706,0,-2.97985	1/2:131:0,85,46:0:0:85,46:2955,1633:-372.705,-133.392,-107.804,-239.665,0,-225.818	1/1:53:0,50,3:0:0:50,3:1744,104:-156.472,-15.0515,0,-148.024,-6.2576,-147.121	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:5:0,2,3:0:0:2,3:72,108:-15.0436,-9.17208,-8.57002,-6.23124,0,-5.32815	1/1:89:0,89,0:0:0:89,0:3124,0:-280.299,-26.7917,0,-280.299,-26.7917,-280.299	1/2:63:0,39,23:0:0:39,23:1387,824:-180.039,-67.1952,-55.455,-112.842,0,-105.918	2/2:6:0,0,5:0:0:0,5:0,180:-16.1927,-16.1927,-16.1927,-1.50515,-1.50515,0	1/2:90:0,47,42:0:0:47,42:1629,1463:-249.669,-119.045,-104.897,-130.699,0,-118.056	1/2:107:0,61,46:0:0:61,46:2132,1629:-306.01,-133.008,-114.645,-173.354,0,-159.506	1/2:56:0,37,19:0:0:37,19:1299,676:-160.662,-55.4484,-44.3103,-105.567,0,-99.8471	1/2:70:0,47,23:0:0:47,23:1662,824:-202.45,-67.5228,-53.3744,-135.283,0,-128.36	1/1:130:0,129,0:0:0:129,0:4483,0:-402.575,-38.8329,0,-402.575,-38.8329,-402.575	1/2:111:0,32,79:0:0:32,79:1126,2772:-317.021,-225.882,-216.249,-91.4416,0,-67.6603	1/2:25:0,10,15:0:0:10,15:351,517:-70.8692,-42.3392,-39.3289,-28.8781,0,-24.3627	1/2:47:0,21,23:0:0:21,23:706,828:-124.544,-67.5707,-61.249,-56.9796,0,-50.056	1/2:47:1,30,16:1:36:30,16:1043,561:-127.107,-42.6988,-36.6058,-81.761,0,-79.8824	2/2:12:0,1,11:0:0:1,11:36,396:-35.6243,-32.7007,-32.3997,-3.31133,-0.0293101,0	1/1:94:0,94,0:0:0:94,0:3265,0:-293.001,-28.2968,0,-293.001,-28.2968,-293.001	1/1:99:0,99,0:0:0:99,0:3430,0:-307.929,-29.802,0,-307.929,-29.802,-307.929	1/1:89:0,87,0:0:0:87,0:3033,0:-272.502,-26.1896,0,-272.502,-26.1896,-272.502	1/1:109:0,108,1:0:0:108,1:3777,36:-338.925,-32.5112,0,-335.987,-29.5738,-335.686	1/2:103:0,55,48:0:0:55,48:1910,1683:-291.871,-137.293,-120.736,-154.927,0,-140.477	1/1:65:0,64,0:0:0:64,0:2219,0:-199.103,-19.2659,0,-199.103,-19.2659,-199.103	1/2:13:0,6,7:0:0:6,7:211,237:-36.5079,-19.5518,-17.7457,-17.2993,0,-15.1921	1/1:87:0,85,1:0:0:85,1:2951,36:-264.921,-25.5876,0,-261.984,-22.6501,-261.683	1/2:76:0,51,21:0:0:51,21:1763,756:-203.906,-61.7048,-46.3523,-142.216,0,-135.894	1/1:229:0,229,0:0:0:229,0:8079,0:-726.006,-68.9359,0,-726.006,-68.9359,-726.006	1/1:75:0,75,0:0:0:75,0:2661,0:-239.441,-22.5773,0,-239.441,-22.5773,-239.441	1/2:51:0,29,22:0:0:29,22:1025,777:-146.331,-63.6139,-54.8841,-83.0694,0,-76.4467	1/1:49:0,49,0:0:0:49,0:1756,0:-157.845,-14.7505,0,-157.845,-14.7505,-157.845	1/2:101:0,71,30:0:0:71,30:2473,1080:-289.341,-88.4819,-67.1088,-201.215,0,-192.184	1/2:16:0,7,9:0:0:7,9:241,294:-43.6022,-24.066,-21.9588,-19.8722,0,-17.1629	1/1:71:0,71,0:0:0:71,0:2520,0:-226.08,-21.3731,0,-226.08,-21.3731,-226.08	1/1:72:0,71,0:0:0:71,0:2508,0:-224.288,-21.3731,0,-224.288,-21.3731,-224.288	1/1:13:0,12,0:0:0:12,0:431,0:-38.7134,-3.61236,0,-38.7134,-3.61236,-38.7134	1/2:44:0,27,16:0:0:27,16:946,561:-122.119,-45.7016,-37.5738,-76.4668,0,-71.6503	1/2:89:0,43,46:0:0:43,46:1495,1532:-245.68,-124.305,-111.36,-121.715,0,-107.868	1/1:56:0,56,0:0:0:56,0:1967,0:-176.888,-16.8577,0,-176.888,-16.8577,-176.888	1/1:158:0,155,0:0:0:155,0:5475,0:-491.771,-46.6597,0,-491.771,-46.6597,-491.771
chr05	17892057	.	G	A	119340	PASS	AB=0.497452;ABP=3.18734;AC=138;AF=0.734043;AN=188;AO=5653;CIGAR=1X;DP=7239;DPB=7239;DPRA=79.5165;EPP=12269.7;EPPR=3444.79;GTI=5;LEN=1;MEANALT=1.01099;MQM=59.9315;MQMR=59.9634;NS=94;NUMALT=1;ODDS=0.088143;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200463;QR=56591;RO=1585;RPL=0;RPP=12278.3;RPPR=3444.79;RPR=5653;RUN=1;SAF=5652;SAP=12269.7;SAR=1;SRF=1585;SRP=3444.79;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:6,16:6:216:16:564:-44.4676,0,-13.1679	1/1:98:0,98:0:0:98:3438:-309.608,-29.5009,0	0/1:77:32,45:32:1135:45:1581:-119.399,0,-79.2788	1/1:148:0,148:0:0:148:5241:-471.832,-44.5524,0	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:91:53,38:53:1887:38:1350:-94.4063,0,-142.714	1/1:145:0,145:0:0:145:5122:-461.095,-43.6494,0	0/1:76:36,40:36:1292:40:1420:-105.219,0,-92.5143	1/1:76:0,76:0:0:76:2688:-242.167,-22.8783,0	1/1:61:1,60:1:36:60:2128:-188.191,-14.7646,0	0/1:61:27,34:27:951:34:1224:-92.1042,0,-67.5397	0/1:53:24,29:24:864:29:1034:-77.4189,0,-62.128	0/1:51:21,30:21:739:30:1068:-81.0795,0,-51.4798	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:71:0,71:0:0:71:2524:-227.413,-21.3731,0	1/1:88:0,88:0:0:88:3137:-282.553,-26.4906,0	1/1:39:0,39:0:0:39:1392:-125.565,-11.7402,0	1/1:48:0,48:0:0:48:1711:-154.26,-14.4494,0	0/1:98:47,51:47:1663:51:1820:-134.58,0,-120.456	1/1:112:0,112:0:0:112:3930:-353.894,-33.7154,0	0/1:21:14,7:14:504:7:248:-16.3426,0,-39.3765	0/1:62:37,25:37:1328:25:883:-61.1236,0,-101.158	0/1:94:50,44:50:1784:44:1543:-110.863,0,-132.546	1/1:22:0,22:0:0:22:757:-68.4456,-6.62266,0	1/1:153:0,153:0:0:153:5437:-489.462,-46.0576,0	0/1:146:72,74:72:2573:74:2603:-190.565,0,-187.867	0/1:35:15,20:15:540:20:704:-53.1485,0,-38.4005	0/1:145:79,66:79:2828:66:2328:-166.132,0,-211.11	0/1:142:81,61:81:2892:61:2142:-150.299,0,-217.77	1/1:96:0,96:0:0:96:3420:-308.015,-28.8989,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:14:0,14:0:0:14:494:-44.7934,-4.21442,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:268:0,268:0:0:268:9565:-860.808,-80.676,0	1/1:166:0,166:0:0:166:5893:-530.456,-49.971,0	1/1:102:0,102:0:0:102:3628:-326.713,-30.7051,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:102:53,49:53:1884:49:1732:-125.46,0,-139.134	0/1:41:21,20:21:752:20:705:-51.4306,0,-55.664	0/1:91:53,38:53:1900:38:1340:-93.5063,0,-143.884	0/1:102:53,49:53:1892:49:1748:-126.899,0,-139.853	1/1:87:0,87:0:0:87:3092:-278.396,-26.1896,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:74:0,74:0:0:74:2633:-237.189,-22.2762,0	0/1:186:71,115:71:2517:115:4082:-311.578,0,-170.79	1/1:56:0,56:0:0:56:1969:-177.483,-16.8577,0	1/1:96:0,96:0:0:96:3395:-305.767,-28.8989,0	1/1:86:0,86:0:0:86:3026:-272.572,-25.8886,0	0/1:9:7,2:7:252:2:68:-3.74844,0,-20.3197	1/1:121:1,119:1:36:119:4235:-377.72,-32.8852,0	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	0/1:18:9,9:9:324:9:319:-23.6296,0,-24.0873	0/1:96:41,55:41:1464:55:1960:-147.777,0,-103.157	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:6,5:6:216:5:172:-12.5066,0,-16.4792	1/1:48:0,48:0:0:48:1687:-152.114,-14.4494,0	0/1:113:57,56:57:2036:56:1992:-145.538,0,-149.496	0/1:9:2,7:2:68:7:237:-18.9498,0,-3.74844	0/1:138:63,75:63:2264:75:2623:-194.776,0,-162.48	0/1:162:77,85:77:2737:85:3014:-222.656,0,-197.798	0/1:61:27,34:27:972:34:1166:-86.8767,0,-69.4351	0/1:66:37,29:37:1328:29:1009:-71.2496,0,-99.9543	1/1:191:0,191:0:0:191:6775:-609.825,-57.4967,0	0/1:71:51,20:51:1832:20:701:-42.0209,0,-143.788	0/1:37:20,17:20:712:17:596:-42.8297,0,-53.2685	0/1:51:27,24:27:968:24:856:-62.0086,0,-72.0848	0/1:55:29,26:29:1040:26:936:-68.0028,0,-77.3577	0/1:12:7,5:7:248:5:176:-12.5727,0,-19.0518	1/1:61:0,61:0:0:61:2139:-192.346,-18.3628,0	1/1:60:1,59:1:36:59:2069:-182.859,-14.4635,0	1/1:140:0,140:0:0:140:4973:-447.721,-42.1442,0	1/1:96:1,95:1:36:95:3348:-297.939,-25.3006,0	0/1:63:29,34:29:1036:34:1192:-88.3777,0,-74.589	1/1:70:0,70:0:0:70:2488:-224.174,-21.0721,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:75:0,75:0:0:75:2644:-238.202,-22.5773,0	0/1:37:11,26:11:396:26:924:-72.3395,0,-24.8446	1/1:180:0,180:0:0:180:6406:-576.629,-54.1854,0	1/1:115:0,115:0:0:115:4101:-369.275,-34.6185,0	0/1:44:21,23:21:752:23:824:-61.238,0,-54.7609	1/1:74:0,74:0:0:74:2632:-237.128,-22.2762,0	0/1:162:75,87:75:2680:87:3108:-231.181,0,-192.679	0/1:36:19,17:19:680:17:612:-44.5764,0,-50.6921	1/1:136:0,136:0:0:136:4844:-436.078,-40.9401,0	1/1:79:0,79:0:0:79:2812:-253.32,-23.7814,0	1/1:46:0,46:0:0:46:1648:-148.607,-13.8474,0	0/1:76:48,28:48:1711:28:996:-67.0766,0,-131.397	0/1:98:59,39:59:2090:39:1388:-95.718,0,-158.868	1/1:61:0,61:0:0:61:2165:-195.115,-18.3628,0	1/1:108:0,108:0:0:108:3825:-344.448,-32.5112,0
chr05	17896948	.	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chr05	17960334	.	A	G	34131.6	PASS	AB=0.499043;ABP=3.04355;AC=47;AF=0.25;AN=188;AO=2106;CIGAR=1X;DP=9140;DPB=9140;DPRA=1.17663;EPP=4576.13;EPPR=15259.8;GTI=0;LEN=1;MEANALT=1.03333;MQM=59.982;MQMR=59.9933;NS=94;NUMALT=1;ODDS=9.66184;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73967;QR=250308;RO=7030;RPL=4;RPP=4541.45;RPPR=15216.4;RPR=2102;RUN=1;SAF=4;SAP=4541.45;SAR=2102;SRF=7;SRP=15207.7;SRR=7023;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:16,18:16:576:18:629:-46.6988,0,-41.94	0/0:176:174,2:174:6211:2:72:0,-46.1446,-552.249	0/1:132:71,61:71:2532:61:2166:-155.47,0,-188.396	0/0:215:215,0:215:7693:0:0:0,-64.7214,-692.403	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:92:92,0:92:3272:0:0:0,-27.6948,-294.699	0/1:83:41,42:41:1442:42:1468:-107.426,0,-105.089	0/0:202:201,1:201:7169:1:36:0,-57.2098,-641.67	0/1:62:28,34:28:978:34:1220:-91.4429,0,-69.6673	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:57:30,27:30:1056:27:915:-65.4979,0,-78.1922	0/1:56:26,30:26:927:30:1044:-77.4093,0,-66.8897	0/1:82:53,29:53:1867:29:1010:-66.5251,0,-143.621	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.323	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/0:81:81,0:81:2854:0:0:0,-24.3834,-257.097	0/0:70:70,0:70:2479:0:0:0,-21.0721,-223.364	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/1:115:59,56:59:2097:56:1943:-140.522,0,-154.38	0/0:95:95,0:95:3384:0:0:0,-28.5978,-304.774	0/1:43:10,33:10:360:33:1175:-93.1127,0,-19.8	0/1:122:68,54:68:2414:54:1913:-135.72,0,-180.79	0/1:128:81,47:81:2904:47:1655:-110.702,0,-223.064	0/0:46:46,0:46:1620:0:0:0,-13.8474,-146.086	0/0:399:398,0:398:14194:0:0:0,-119.81,-1277.01	0/1:174:82,92:82:2944:92:3223:-237.913,0,-212.814	0/1:49:25,24:25:896:24:847:-61.7983,0,-66.2099	0/1:147:79,68:79:2836:68:2378:-170.025,0,-211.227	0/1:176:71,105:71:2543:105:3708:-280.853,0,-176.139	0/0:127:127,0:127:4509:0:0:0,-38.2308,-405.933	0/1:8:3,5:3:108:5:165:-12.7654,0,-7.66693	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:10:4,6:4:144:6:203:-15.5909,0,-10.3033	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/0:190:190,0:190:6737:0:0:0,-57.1957,-606.406	0/0:217:214,3:214:7635:3:108:0,-55.2483,-677.112	0/0:39:39,0:39:1340:0:0:0,-11.7402,-120.892	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:169:72,96:72:2576:96:3394:-254.742,0,-181.157	0/1:27:13,14:13:460:14:495:-36.7552,0,-33.6076	0/1:181:90,91:90:3214:91:3175:-231.486,0,-234.995	0/1:76:44,32:44:1556:32:1111:-77.4152,0,-117.453	0/0:61:61,0:61:2146:0:0:0,-18.3628,-193.407	0/0:52:51,0:51:1809:0:0:0,-15.3525,-162.858	0/0:128:127,1:127:4530:1:36:0,-34.9336,-404.269	0/1:215:117,98:117:4175:98:3443:-245.362,0,-311.211	0/0:99:98,1:98:3493:1:36:0,-26.2037,-310.982	0/0:156:156,0:156:5574:0:0:0,-46.9607,-501.781	0/0:110:110,0:110:3921:0:0:0,-33.1133,-353.083	0/1:15:2,13:2:72:13:451:-36.4044,0,-2.32127	0/0:113:113,0:113:4021:0:0:0,-34.0164,-362.076	0/0:49:49,0:49:1747:0:0:0,-14.7505,-156.736	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/1:139:57,82:57:2016:82:2906:-219.93,0,-139.868	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:24:14,10:14:492:10:352:-24.7928,0,-37.3876	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/1:126:70,56:70:2493:56:1966:-139.282,0,-186.692	0/1:7:1,6:1:27:6:203:-16.494,0,-0.592573	0/1:278:133,145:133:4760:145:5124:-377.616,0,-344.871	0/1:268:136,131:136:4854:131:4645:-337.477,0,-356.279	0/1:135:78,57:78:2762:57:1954:-135.489,0,-208.183	0/1:101:60,41:60:2110:41:1448:-100.209,0,-159.762	0/0:175:174,1:174:6177:1:36:0,-49.082,-552.432	0/1:77:28,49:28:1004:49:1725:-132.353,0,-67.4966	0/1:26:14,12:14:504:12:408:-29.2173,0,-37.8713	0/1:50:23,27:23:828:27:946:-70.4014,0,-59.7926	0/1:75:32,43:32:1139:43:1485:-111.361,0,-80.2411	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/0:81:79,2:79:2814:2:68:0,-17.9257,-247.041	0/0:51:51,0:51:1796:0:0:0,-15.3525,-161.919	0/0:127:127,0:127:4486:0:0:0,-38.2308,-403.909	0/0:178:177,1:177:6332:1:21:0,-51.4834,-567.869	0/1:164:87,77:87:3103:77:2723:-195.943,0,-230.129	0/0:153:152,1:152:5431:1:36:0,-42.4593,-485.319	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:143:142,1:142:5056:1:36:0,-39.449,-451.587	0/1:94:56,38:56:1974:38:1327:-91.4293,0,-149.637	0/0:218:216,2:216:7703:2:72:0,-58.7878,-686.465	0/0:96:96,0:96:3419:0:0:0,-28.8989,-307.925	0/1:53:27,26:27:963:26:896:-64.9961,0,-71.0313	0/0:96:96,0:96:3381:0:0:0,-28.8989,-304.506	0/1:144:73,71:73:2612:71:2508:-182.623,0,-191.98	0/1:55:27,28:27:960:28:992:-73.0377,0,-70.1596	0/0:66:65,1:65:2323:1:36:0,-16.2697,-205.731	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:28:28,0:28:974:0:0:0,-8.42884,-87.9707	0/1:73:45,28:45:1595:28:987:-67.1678,0,-121.864	0/1:72:22,50:22:792:50:1724:-133.765,0,-49.9315	0/0:153:150,3:150:5352:3:108:0,-35.9824,-471.737	0/0:100:100,0:100:3544:0:0:0,-30.103,-319.169
chr05	17960359	.	C	T	35777.4	PASS	AB=0.501076;ABP=3.05237;AC=47;AF=0.25;AN=188;AO=2113;CIGAR=1X;DP=9143;DPB=9143;DPRA=1.04589;EPP=4479.11;EPPR=14961.6;GTI=0;LEN=1;MEANALT=1.01695;MQM=59.964;MQMR=59.991;NS=94;NUMALT=1;ODDS=9.88984;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75343;QR=251193;RO=7028;RPL=2100;RPP=4479.11;RPPR=14970.2;RPR=13;RUN=1;SAF=0;SAP=4591.33;SAR=2113;SRF=1;SRP=15255.4;SRR=7027;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:15,17:15:525:17:597:-44.4232,0,-37.9451	0/0:185:183,2:183:6520:2:72:0,-48.8538,-580.048	0/1:131:71,60:71:2548:60:2134:-152.89,0,-190.135	0/0:219:219,0:219:7832:0:0:0,-65.9256,-704.91	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/1:82:41,41:41:1449:41:1472:-108.092,0,-106.019	0/0:205:205,0:205:7304:0:0:0,-61.7111,-657.413	0/1:59:26,33:26:932:33:1188:-89.4678,0,-66.4381	0/0:107:106,0:106:3796:0:0:0,-31.9092,-341.478	0/0:68:67,1:67:2395:1:36:0,-16.8718,-212.208	0/1:59:31,28:31:1116:28:1008:-73.2756,0,-82.9909	0/1:57:27,30:27:953:30:1068:-79.2734,0,-68.9246	0/1:79:51,28:51:1832:28:1004:-66.8945,0,-141.379	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:81:81,0:81:2883:0:0:0,-24.3834,-259.707	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:120:60,60:60:2144:60:2144:-157.104,0,-157.104	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/1:39:9,30:9:324:30:1076:-85.4127,0,-17.7657	0/1:116:65,51:65:2317:51:1813:-128.53,0,-173.869	0/1:131:84,47:84:3008:47:1684:-112.412,0,-231.516	0/0:46:45,1:45:1616:1:36:0,-10.2491,-142.132	0/0:405:405,0:405:14442:0:0:0,-121.917,-1299.53	0/1:181:85,96:85:3025:96:3427:-254.157,0,-217.993	0/1:49:25,24:25:900:24:864:-63.3321,0,-66.5705	0/1:148:78,70:78:2804:70:2508:-181.42,0,-208.047	0/1:181:73,108:73:2600:108:3847:-291.45,0,-179.76	0/0:124:124,0:124:4409:0:0:0,-37.3277,-396.965	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7375	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:193:193,0:193:6890:0:0:0,-58.0988,-620.166	0/0:214:211,3:211:7548:3:108:0,-54.3452,-669.283	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:163:68,95:68:2428:95:3382:-255.525,0,-169.708	0/1:28:13,15:13:456:15:525:-39.1492,0,-32.9444	0/1:180:90,90:90:3224:90:3197:-233.768,0,-236.197	0/1:77:42,35:42:1504:35:1260:-90.5262,0,-112.475	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.104	0/0:131:131,0:131:4653:0:0:0,-39.4349,-418.931	0/1:217:119,98:119:4256:98:3467:-246.917,0,-317.896	0/0:99:98,1:98:3503:1:36:0,-26.2037,-311.882	0/0:158:158,0:158:5660:0:0:0,-47.5627,-509.519	0/0:108:108,0:108:3856:0:0:0,-32.5112,-347.237	0/1:15:2,13:2:72:13:464:-37.5821,0,-2.32127	0/0:113:112,1:112:4019:1:36:0,-30.4181,-358.299	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.065	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:142:56,85:56:1984:85:3011:-228.464,0,-136.138	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:13:5,8:5:180:8:273:-20.9868,0,-12.6387	0/1:23:13,10:13:459:10:349:-24.821,0,-34.7204	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:124:68,56:68:2448:56:1985:-141.594,0,-183.247	0/1:7:1,6:1:32:6:216:-17.6833,0,-1.0921	0/1:275:134,141:134:4808:141:5010:-368.264,0,-350.091	0/1:273:138,135:138:4940:135:4776:-347.816,0,-362.569	0/1:128:72,56:72:2584:56:2012:-142.821,0,-194.277	0/1:103:61,42:61:2180:42:1500:-104.288,0,-165.46	0/0:177:175,2:175:6259:2:58:0,-47.778,-557.9	0/1:78:28,50:28:1004:50:1767:-135.829,0,-67.1955	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	0/1:50:24,26:24:852:26:936:-69.508,0,-61.9489	0/1:78:33,45:33:1188:45:1612:-121.89,0,-83.7483	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/0:79:79,0:79:2831:0:0:0,-23.7814,-255.028	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:125:125,0:125:4475:0:0:0,-37.6287,-402.919	0/0:177:176,1:176:6280:1:36:0,-49.684,-561.695	0/1:158:85,73:85:3052:73:2624:-188.844,0,-227.346	0/0:154:154,0:154:5499:0:0:0,-46.3586,-495.038	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:144:143,1:143:5102:1:36:0,-39.75,-455.726	0/1:96:58,38:58:2059:38:1364:-94.1618,0,-156.682	0/0:211:210,1:210:7492:1:36:0,-59.9191,-670.725	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/1:52:27,25:27:972:25:900:-65.6675,0,-72.1443	0/0:94:94,0:94:3355:0:0:0,-28.2968,-302.167	0/1:143:71,72:71:2537:72:2573:-188.771,0,-185.532	0/1:57:29,28:29:1021:28:1004:-73.5172,0,-75.0415	0/0:65:64,1:64:2284:1:36:0,-15.9687,-202.224	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:73:43,30:43:1533:30:1076:-75.1777,0,-116.286	0/1:75:23,52:23:824:52:1864:-145.462,0,-51.9061	0/0:154:151,3:151:5412:3:108:0,-36.2834,-477.134	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813
chr05	18386978	.	T	C	172964	PASS	AB=0.492158;ABP=5.70082;AC=138;AF=0.734043;AN=188;AO=8046;CIGAR=1X;DP=10631;DPB=10631;DPRA=16.486;EPP=16948.9;EPPR=5392.54;GTI=0;LEN=1;MEANALT=1.04348;MQM=59.9416;MQMR=59.9744;NS=94;NUMALT=1;ODDS=2.681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287456;QR=92532;RO=2581;RPL=7985;RPP=16948.9;RPPR=5392.54;RPR=61;RUN=1;SAF=0;SAP=17474.7;SAR=8046;SRF=0;SRP=5607.58;SRR=2581;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:14,19:14:504:19:684:-51.9563,0,-35.7641	1/1:192:0,192:0:0:192:6867:-618.096,-57.7978,0	0/1:167:78,89:78:2796:89:3176:-235.793,0,-201.608	1/1:228:0,227:0:0:227:8132:-731.535,-68.3338,0	1/1:57:1,56:1:36:56:2008:-177.435,-13.6001,0	1/1:35:0,35:0:0:35:1254:-113.165,-10.5361,0	0/1:127:57,70:57:2040:70:2462:-183.601,0,-145.641	1/1:117:0,117:0:0:117:4188:-377.094,-35.2205,0	0/1:72:44,28:44:1569:28:991:-67.8222,0,-119.825	1/1:114:0,114:0:0:114:4071:-366.576,-34.3174,0	1/1:120:0,120:0:0:120:4304:-387.536,-36.1236,0	0/1:86:46,40:46:1648:40:1436:-103.649,0,-122.72	0/1:108:50,58:50:1800:58:2075:-154.509,0,-129.771	0/1:158:85,73:85:3056:73:2607:-187.315,0,-227.706	1/1:99:1,98:1:36:98:3503:-311.392,-26.2037,0	1/1:91:0,91:0:0:91:3239:-291.732,-27.3937,0	1/1:115:0,115:0:0:115:4113:-370.353,-34.6185,0	1/1:101:0,100:0:0:100:3575:-321.584,-30.103,0	1/1:76:0,76:0:0:76:2711:-244.234,-22.8783,0	0/1:174:95,79:95:3386:79:2836:-203.099,0,-252.573	1/1:98:0,98:0:0:98:3501:-315.299,-29.5009,0	0/1:92:52,40:52:1868:40:1436:-101.843,0,-140.705	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:84:41,43:41:1464:43:1536:-113.247,0,-106.77	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0	1/1:323:0,323:0:0:323:11567:-1040.89,-97.2327,0	0/1:170:65,105:65:2317:105:3732:-284.906,0,-157.614	0/1:41:17,24:17:608:24:862:-65.5601,0,-42.7098	0/1:206:84,122:84:3020:122:4358:-330.38,0,-210.018	0/1:161:81,80:81:2900:80:2868:-209.891,0,-212.453	1/1:127:0,127:0:0:127:4548:-409.486,-38.2308,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	1/1:263:0,263:0:0:263:9427:-848.018,-79.1709,0	1/1:288:2,286:2:72:286:10207:-911.091,-79.8599,0	1/1:95:0,95:0:0:95:3391:-305.175,-28.5979,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:112:72,40:72:2569:40:1432:-95.4622,0,-197.743	0/1:77:45,32:45:1620:32:1148:-80.4505,0,-122.911	0/1:105:49,56:49:1748:56:1996:-148.306,0,-125.996	0/1:60:29,31:29:1040:31:1108:-81.9692,0,-75.8526	1/1:74:1,73:1:36:73:2603:-230.914,-18.6779,0	1/1:48:0,48:0:0:48:1697:-153.014,-14.4494,0	1/1:117:0,117:0:0:117:4202:-378.354,-35.2205,0	0/1:166:79,87:79:2832:87:3082:-227.609,0,-205.147	1/1:144:0,144:0:0:144:5156:-463.811,-43.3483,0	1/1:288:1,287:1:36:287:10267:-920.353,-83.0984,0	1/1:175:0,174:0:0:174:6187:-556.702,-52.3792,0	0/1:10:5,5:5:180:5:172:-12.8077,0,-13.5418	1/1:182:2,180:2:72:180:6444:-573.21,-47.9507,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:162:80,82:80:2872:82:2935:-215.617,0,-209.95	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	1/1:109:0,109:0:0:109:3906:-351.724,-32.8123,0	0/1:229:125,104:125:4496:104:3709:-265.067,0,-335.871	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:304:123,181:123:4401:181:6486:-492.176,0,-304.748	0/1:177:94,82:94:3376:82:2932:-210.922,0,-250.671	0/1:112:67,45:67:2408:45:1608:-111.295,0,-183.261	0/1:152:69,83:69:2476:83:2949:-219.887,0,-177.337	1/1:96:0,96:0:0:96:3400:-306.216,-28.8989,0	0/1:184:124,60:124:4433:60:2148:-138.198,0,-343.751	0/1:63:30,33:30:1080:33:1175:-87.0921,0,-78.5484	0/1:109:56,53:56:2004:53:1896:-138.105,0,-147.821	0/1:177:89,88:89:3200:88:3132:-228.792,0,-234.94	0/1:45:31,14:31:1116:14:493:-31.1561,0,-87.2053	1/1:124:0,124:0:0:124:4436:-399.365,-37.3277,0	1/1:98:1,97:1:36:97:3435:-305.763,-25.9027,0	1/1:123:0,123:0:0:123:4411:-397.143,-37.0267,0	1/1:144:0,144:0:0:144:5156:-464.173,-43.3483,0	0/1:150:71,79:71:2552:79:2832:-209.929,0,-184.775	1/1:118:0,118:0:0:118:4218:-379.763,-35.5215,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:102:0,102:0:0:102:3643:-328.074,-30.7051,0	0/1:174:101,73:101:3597:73:2597:-181.469,0,-271.557	1/1:181:0,181:0:0:181:6470:-582.385,-54.4864,0	1/1:160:0,160:0:0:160:5696:-512.75,-48.1648,0	0/1:110:55,55:55:1968:55:1968:-144.282,0,-144.282	1/1:78:0,78:0:0:78:2770:-249.539,-23.4803,0	0/1:189:90,99:90:3236:99:3517:-259.846,0,-234.566	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	1/1:89:0,89:0:0:89:3170:-285.523,-26.7917,0	1/1:93:1,92:1:36:92:3308:-294.339,-24.3975,0	1/1:118:0,118:0:0:118:4203:-378.453,-35.5215,0	0/1:268:132,136:132:4748:136:4868:-357.597,0,-346.799	0/1:84:57,27:57:2044:27:968:-62.1508,0,-158.945	1/1:137:0,137:0:0:137:4873:-438.718,-41.2411,0	1/1:106:0,106:0:0:106:3802:-342.372,-31.9092,0
chr05	18407177	.	C	T	14734.1	PASS	AB=0.495017;ABP=3.39987;AC=47;AF=0.25;AN=188;AO=897;CIGAR=1X;DP=3965;DPB=3965;DPRA=0.901574;EPP=1933.49;EPPR=6456.09;GTI=2;LEN=1;MEANALT=1;MQM=59.9933;MQMR=60;NS=94;NUMALT=1;ODDS=0.28396;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31954;QR=109743;RO=3067;RPL=895;RPP=1933.49;RPPR=6456.09;RPR=2;RUN=1;SAF=0;SAP=1950.82;SAR=897;SRF=0;SRP=6662.92;SRR=3067;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:83:49,34:49:1756:34:1200:-83.3174,0,-133.339	0/0:108:107,0:107:3827:0:0:0,-32.2102,-344.267	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/1:78:52,26:52:1852:26:916:-59.2761,0,-143.48	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/1:20:14,6:14:500:6:205:-12.763,0,-39.3156	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:24:8,16:8:288:16:572:-44.5887,0,-19.0427	0/1:31:18,13:18:648:13:460:-32.4034,0,-49.32	0/1:33:13,20:13:464:20:716:-54.8337,0,-32.1635	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:116:48,68:48:1712:68:2440:-184.935,0,-119.446	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:83:30,53:30:1076:53:1897:-146.022,0,-72.1674	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:28:19,9:19:675:9:316:-20.35,0,-52.6481	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:126:126,0:126:4501:0:0:0,-37.9298,-405.258	0/1:68:38,30:38:1364:30:1074:-76.4981,0,-102.591	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/1:128:64,64:64:2296:64:2286:-167.47,0,-168.369	0/1:33:22,11:22:788:11:388:-25.3234,0,-61.3108	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:65:35,30:35:1248:30:1072:-77.2255,0,-93.0579	0/1:21:10,11:10:360:11:388:-28.9357,0,-26.4227	0/1:36:8,28:8:288:28:1008:-80.1993,0,-15.4303	0/1:28:8,20:8:284:20:720:-56.6999,0,-17.4745	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:79:55,24:55:1968:24:837:-51.8643,0,-153.614	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:87:50,37:50:1784:37:1300:-91.1116,0,-134.653	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/1:71:43,28:43:1540:28:1008:-69.6632,0,-117.52	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:78:40,38:40:1432:38:1360:-99.2203,0,-105.697	0/1:78:33,45:33:1188:45:1581:-119.098,0,-83.7483	0/1:20:10,10:10:356:10:360:-26.7237,0,-26.3606	0/1:38:11,27:11:396:27:949:-74.2836,0,-24.5436	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:26:8,18:8:288:18:629:-49.107,0,-18.4406	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/1:37:17,20:17:603:20:712:-53.2685,0,-43.4614	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/1:66:30,36:30:1080:36:1284:-95.9949,0,-77.6453	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:69:68,1:68:2436:1:36:0,-17.1728,-215.897	0/1:87:48,39:48:1720:39:1404:-100.47,0,-128.896	0/0:103:103,0:103:3699:0:0:0,-31.0061,-333.11	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/1:23:9,14:9:320:14:500:-38.4125,0,-22.2187	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:55:30,25:30:1072:25:896:-64.4037,0,-80.2358	0/1:15:6,9:6:212:9:320:-24.6269,0,-14.9093	0/0:40:40,0:40:1414:0:0:0,-12.0412,-127.556	0/0:27:27,0:27:954:0:0:0,-8.12781,-86.174	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:39:22,17:22:788:17:612:-43.6733,0,-59.5046	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/0:46:45,1:45:1589:1:36:0,-10.2491,-139.7
chr05	18573176	.	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chr05	18573290	.	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chr05	18573310	.	G	A	45931.6	PASS	AB=0.283371;ABP=5792.74;AC=86;AF=0.457447;AN=188;AO=4082;CIGAR=1X;DP=15044;DPB=15044;DPRA=26.07;EPP=8866.96;EPPR=23782.8;GTI=17;LEN=1;MEANALT=1.12088;MQM=47.0811;MQMR=59.9706;NS=94;NUMALT=1;ODDS=0.212468;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145788;QR=388107;RO=10951;RPL=0;RPP=8866.96;RPPR=23774.1;RPR=4082;RUN=1;SAF=0;SAP=8866.96;SAR=4082;SRF=1;SRP=23774.1;SRR=10950;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:44,9:44:1576:9:320:-13.0384,0,-126.171	0/1:261:218,43:218:7723:43:1548:-59.9911,0,-616.532	0/1:193:155,38:155:5475:38:1355:-62.8856,0,-434.754	0/1:265:192,73:192:6848:73:2609:-150.729,0,-536.618	0/0:92:88,4:88:3132:4:144:0,-14.4731,-268.883	0/1:83:65,18:65:2288:18:640:-32.2843,0,-181.195	0/1:190:137,53:137:4906:53:1895:-111.832,0,-384.494	0/1:175:145,29:145:5179:29:1021:-38.9923,0,-413.512	0/1:139:117,22:117:4123:22:775:-27.7966,0,-329.353	0/1:229:133,96:133:4743:96:3443:-237.468,0,-358.094	0/1:109:70,39:70:2460:39:1400:-92.0375,0,-188.842	0/1:100:65,35:65:2300:35:1248:-81.344,0,-177.156	0/1:121:72,48:72:2538:48:1686:-114.112,0,-192.186	0/1:198:108,90:108:3800:90:3171:-223.834,0,-282.595	0/1:81:43,38:43:1522:38:1368:-97.6086,0,-112.888	0/1:90:54,36:54:1940:36:1284:-87.9948,0,-147.783	0/1:153:107,46:107:3765:46:1620:-98.9828,0,-292.994	0/1:71:38,33:38:1335:33:1184:-84.4435,0,-99.076	0/1:51:34,17:34:1211:17:612:-39.7644,0,-93.9348	0/1:606:469,137:469:16619:137:4904:-252.931,0,-1312.85	0/1:224:157,67:157:5563:67:2384:-145.63,0,-433.36	0/1:159:144,15:144:5104:15:536:-0.306057,0,-411.643	0/1:58:42,16:42:1473:16:576:-34.265,0,-115.402	0/1:138:104,34:104:3684:34:1207:-66.386,0,-290.219	0/1:73:54,19:54:1923:19:684:-38.9002,0,-151.371	0/1:561:434,127:434:15465:127:4539:-233.682,0,-1222.68	0/1:281:212,69:212:7563:69:2472:-136.296,0,-596.118	0/1:58:29,29:29:1036:29:1029:-74.8323,0,-76.0942	0/1:314:261,52:261:9296:52:1854:-71.13,0,-742.019	0/1:282:207,75:207:7355:75:2700:-155.796,0,-577.103	0/1:269:198,70:198:7010:70:2499:-140.007,0,-549.823	0/0:10:10,0:10:332:0:0:0,-3.0103,-30.2001	0/1:13:10,3:10:356:3:108:-6.0972,0,-28.4679	0/1:4:3,1:3:104:1:32:-1.98731,0,-8.49869	0/1:7:6,1:6:216:1:36:-1.47156,0,-17.6833	0/1:7:5,2:5:180:2:72:-4.68109,0,-14.4449	0/1:278:153,125:153:5433:125:4484:-313.534,0,-405.414	0/1:440:391,48:391:13828:48:1720:-20.3486,0,-1111.8	0/1:93:65,28:65:2306:28:989:-60.8584,0,-179.804	0/1:9:6,3:6:216:3:108:-7.29635,0,-17.0812	0/1:266:194,72:194:6873:72:2584:-149.95,0,-538.567	0/1:39:27,12:27:955:12:432:-27.1626,0,-74.5247	0/1:204:181,23:181:6432:23:815:-11.7837,0,-517.555	0/1:103:65,38:65:2305:38:1364:-90.198,0,-176.7	0/1:103:65,38:65:2313:38:1356:-89.8124,0,-177.423	0/0:110:100,10:100:3526:10:356:0,-1.0014,-285.438	0/0:90:82,8:82:2906:8:284:0,-1.31724,-236.001	0/1:226:193,33:193:6826:33:1188:-36.7528,0,-546.38	0/1:140:105,35:105:3735:35:1260:-70.2307,0,-294.205	0/1:277:198,78:198:7039:78:2783:-161.933,0,-550.126	0/1:272:215,57:215:7677:57:2039:-99.7712,0,-609.086	0/1:15:10,5:10:360:5:180:-11.8919,0,-28.2289	0/0:261:238,23:238:8367:23:828:0,-4.68425,-679.16	0/1:258:220,37:220:7806:37:1332:-40.7225,0,-624.792	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/1:211:146,65:146:5214:65:2332:-143.891,0,-405.873	0/1:19:14,5:14:504:5:180:-10.6878,0,-39.9785	0/1:8:4,4:4:144:4:140:-10.4372,0,-10.9054	0/1:49:33,16:33:1152:16:576:-36.9517,0,-89.2329	0/1:179:148,31:148:5235:31:1112:-45.5149,0,-417.404	0/1:244:134,110:134:4755:110:3936:-276.772,0,-354.658	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:406:199,206:199:7029:206:7381:-533.377,0,-510.397	0/1:378:314,64:314:11175:64:2289:-89.9809,0,-891.847	0/1:165:107,57:107:3789:57:2040:-132.21,0,-291.482	0/1:116:98,18:98:3520:18:648:-23.2481,0,-282.087	0/1:280:218,62:218:7652:62:2191:-110.397,0,-604.436	0/1:256:207,49:207:7341:49:1756:-79.2252,0,-583.678	0/1:49:32,17:32:1129:17:604:-39.5368,0,-87.1659	0/1:110:75,35:75:2673:35:1245:-78.3612,0,-207.701	0/1:206:124,82:124:4365:82:2931:-198.957,0,-331.015	0/1:49:26,23:26:928:23:805:-56.9544,0,-69.0878	0/1:171:122,49:122:4331:49:1760:-106.06,0,-338.488	0/1:76:37,39:37:1320:39:1380:-100.49,0,-96.2204	0/1:345:261,84:261:9228:84:3001:-163.748,0,-726.605	0/1:238:188,49:188:6638:49:1751:-84.1423,0,-525.797	0/0:268:256,12:256:9099:12:432:0,-41.9696,-780.18	0/1:157:87,70:87:3059:70:2504:-177.022,0,-228.278	0/1:14:7,7:7:252:7:252:-18.6897,0,-18.8063	0/1:121:92,29:92:3275:29:1040:-56.8815,0,-258.545	0/1:144:110,34:110:3917:34:1215:-65.4274,0,-309.375	0/1:203:142,61:142:5014:61:2188:-134.392,0,-390.299	0/1:181:94,87:94:3278:87:3111:-222.212,0,-240.754	0/1:116:72,44:72:2569:44:1557:-104.277,0,-196.534	0/1:124:68,56:68:2387:56:1990:-139.878,0,-177.758	0/1:222:141,80:141:4969:80:2832:-184.676,0,-380.479	0/1:51:28,23:28:969:23:824:-58.691,0,-72.167	0/1:133:84,49:84:2954:49:1743:-116.005,0,-226.055	0/1:113:67,46:67:2370:46:1644:-112.938,0,-179.539	0/1:94:66,28:66:2327:28:990:-60.2394,0,-181.391	0/1:211:139,72:139:4936:72:2565:-164.336,0,-380.875	0/1:113:72,41:72:2518:41:1468:-97.1223,0,-192.855	0/1:198:123,75:123:4331:75:2670:-176.591,0,-330.358	0/1:115:69,46:69:2408:46:1648:-111.917,0,-182.355
chr05	18573316	.	G	T	46910	PASS	AB=0.284932;ABP=5724.87;AC=86;AF=0.457447;AN=188;AO=4119;CIGAR=1X;DP=15147;DPB=15147;DPRA=24.9346;EPP=8947.31;EPPR=23887;GTI=17;LEN=1;MEANALT=1.10989;MQM=47.075;MQMR=59.9649;NS=94;NUMALT=1;ODDS=4.14679;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147637;QR=392142;RO=11015;RPL=0;RPP=8947.31;RPPR=23887;RPR=4119;RUN=1;SAF=0;SAP=8947.31;SAR=4119;SRF=0;SRP=23921.8;SRR=11015;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:45,9:45:1584:9:320:-12.7374,0,-126.578	0/1:261:216,45:216:7655:45:1620:-65.5937,0,-610.406	0/1:189:150,39:150:5324:39:1396:-66.9059,0,-422.399	0/1:262:189,73:189:6750:73:2618:-152.655,0,-528.705	0/0:95:91,4:91:3241:4:144:0,-15.3761,-278.689	0/1:88:69,19:69:2441:19:676:-34.0004,0,-193.451	0/1:192:138,54:138:4919:54:1940:-115.221,0,-385.062	0/1:179:148,31:148:5268:31:1116:-46.325,0,-420.373	0/1:141:119,22:119:4241:22:788:-28.3486,0,-339.366	0/1:230:133,96:133:4759:96:3452:-237.899,0,-359.085	0/1:108:69,39:69:2422:39:1396:-92.0012,0,-185.72	0/1:102:66,36:66:2355:36:1296:-85.0121,0,-181.503	0/1:119:70,49:70:2488:49:1733:-119.443,0,-188.349	0/1:200:108,92:108:3813:92:3303:-234.94,0,-283.162	0/1:82:44,38:44:1544:38:1360:-96.8699,0,-114.564	0/1:92:53,39:53:1886:39:1400:-97.7572,0,-142.322	0/1:155:108,47:108:3848:47:1688:-104.431,0,-299.855	0/1:72:38,34:38:1364:34:1216:-86.7376,0,-101.387	0/1:51:35,16:35:1243:16:572:-36.1886,0,-96.8099	0/1:615:474,140:474:16856:140:5032:-261.525,0,-1331.47	0/1:224:154,68:154:5495:68:2448:-151.26,0,-427.488	0/0:162:147,15:147:5225:15:540:0,-0.252205,-421.873	0/1:60:42,18:42:1500:18:640:-39.4004,0,-117.233	0/1:139:105,34:105:3722:34:1220:-67.2237,0,-293.337	0/1:73:54,19:54:1927:19:669:-37.5609,0,-151.731	0/1:562:432,130:432:15408:130:4669:-244.083,0,-1217.24	0/1:275:207,68:207:7394:68:2444:-135.52,0,-582.724	0/1:60:29,31:29:1029:31:1108:-81.3003,0,-74.8593	0/1:310:260,50:260:9272:50:1788:-66.5148,0,-741.128	0/1:288:211,77:211:7563:77:2748:-158.836,0,-594.006	0/1:270:201,69:201:7154:69:2480:-137.887,0,-562.53	0/0:11:11,0:11:372:0:0:0,-3.31133,-33.8038	0/1:13:10,3:10:356:3:108:-6.0972,0,-28.4679	0/1:4:3,1:3:108:1:36:-2.37465,0,-8.87105	0/1:7:6,1:6:216:1:36:-1.47156,0,-17.6833	0/1:6:5,1:5:171:1:36:-1.77259,0,-13.9193	0/1:282:157,125:157:5596:125:4492:-314.005,0,-418.87	0/1:441:391,50:391:13881:50:1796:-26.9075,0,-1116.32	0/1:94:66,28:66:2329:28:1008:-62.1938,0,-181.57	0/1:9:6,3:6:216:3:108:-7.29635,0,-17.0812	0/1:269:196,73:196:6935:73:2624:-152.609,0,-543.242	0/1:40:27,13:27:959:13:468:-29.7807,0,-74.5842	0/1:206:183,23:183:6540:23:824:-11.9951,0,-526.665	0/1:103:64,39:64:2274:39:1395:-92.966,0,-173.912	0/1:103:65,38:65:2298:38:1359:-89.8931,0,-176.075	0/1:112:98,11:98:3500:11:396:-2.4967,0,-282.039	0/0:89:82,7:82:2905:7:252:0,-3.88365,-238.775	0/1:225:193,32:193:6936:32:1152:-33.8435,0,-556.571	0/1:141:105,36:105:3763:36:1277:-71.4713,0,-296.423	0/1:278:198,80:198:7078:80:2876:-170.277,0,-553.394	0/1:276:219,57:219:7820:57:2048:-99.3092,0,-620.745	0/1:15:10,5:10:360:5:180:-11.8919,0,-28.2289	0/0:266:243,23:243:8641:23:813:0,-7.52734,-705.133	0/1:257:219,37:219:7798:37:1328:-40.6803,0,-624.42	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:211:145,65:145:5152:65:2327:-144.558,0,-400.241	0/1:20:15,5:15:540:5:180:-10.3867,0,-42.9159	0/1:9:4,5:4:144:5:180:-13.6812,0,-10.6043	0/1:50:35,15:35:1247:15:536:-33.0957,0,-97.4826	0/1:181:150,31:150:5300:31:1101:-43.9088,0,-422.455	0/1:245:134,110:134:4787:110:3939:-276.818,0,-357.176	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:412:204,208:204:7257:208:7454:-538.108,0,-529.152	0/1:380:315,65:315:11242:65:2336:-93.2604,0,-897.268	0/1:167:111,56:111:3918:56:2008:-128.8,0,-302.54	0/1:120:100,19:100:3569:19:684:-25.1669,0,-285.234	0/1:280:217,62:217:7726:62:2213:-112.2,0,-611.028	0/1:257:208,49:208:7428:49:1764:-79.6387,0,-591.201	0/1:50:33,17:33:1156:17:604:-39.2358,0,-89.2921	0/1:110:75,35:75:2687:35:1256:-79.3472,0,-208.961	0/1:207:124,83:124:4444:83:2988:-203.405,0,-337.817	0/1:48:26,22:26:932:22:769:-54.0448,0,-69.7494	0/1:175:125,50:125:4464:50:1796:-108.077,0,-349.248	0/1:75:36,39:36:1288:39:1389:-101.587,0,-93.6463	0/1:340:259,81:259:9206:81:2896:-155.894,0,-726.021	0/1:235:185,50:185:6596:50:1800:-89.4431,0,-522.979	0/0:273:261,12:261:9299:12:432:0,-43.4747,-798.171	0/1:155:85,70:85:3052:70:2504:-177.624,0,-228.249	0/1:14:6,8:6:216:8:288:-21.9145,0,-15.5761	0/1:127:97,30:97:3468:30:1072:-57.9444,0,-274.101	0/1:145:112,33:112:3957:33:1188:-62.7014,0,-312.672	0/1:208:145,63:145:5112:63:2244:-137.866,0,-397.612	0/1:186:95,91:95:3379:91:3259:-233.86,0,-248.332	0/1:118:74,44:74:2631:44:1584:-106.029,0,-201.509	0/1:122:67,55:67:2389:55:1967:-138.049,0,-178.54	0/1:221:141,80:141:4984:80:2860:-187.484,0,-382.073	0/1:53:30,23:30:1067:23:828:-58.4393,0,-80.3866	0/1:136:86,50:86:3038:50:1787:-119.022,0,-232.707	0/1:114:68,46:68:2440:46:1650:-113.355,0,-185.538	0/1:94:67,27:67:2386:27:972:-58.6079,0,-186.7	0/1:215:143,71:143:5090:71:2556:-161.417,0,-393.148	0/1:115:74,41:74:2652:41:1476:-97.0642,0,-204.305	0/1:199:124,75:124:4432:75:2666:-175.771,0,-339.144	0/1:114:68,46:68:2405:46:1652:-112.561,0,-182.386
chr05	18573325	.	AACA	AACG,GACG	302706	PASS	AB=0.708586,0.287825;ABP=5373.04,5559.43;AC=103,85;AF=0.547872,0.452128;AN=188;AO=11016,4164;CIGAR=3M1X,1X2M1X;DP=15231;DPB=15231;DPRA=0,25.0731;EPP=23345.5,9045.02;EPPR=11.6962;GTI=10;LEN=1,4;MEANALT=2.40426,2.45055;MQM=59.9734,47.0744;MQMR=60;NS=94;NUMALT=2;ODDS=10505.4;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=392513,147156;QR=136;RO=4;RPL=10950,4164;RPP=23354.1,9045.02;RPPR=11.6962;RPR=66,0;RUN=1,1;SAF=1,0;SAP=23915.3,9045.02;SAR=11015,4164;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:0,43,10:0:0:43,10:1534,344:-152.987,-27.914,-14.9697,-125.195,0,-122.185	1/2:262:0,216,45:0:0:216,45:7699,1591:-756.063,-128.488,-63.4658,-627.693,0,-614.147	1/2:189:0,149,39:0:0:149,39:5308,1368:-542.653,-109.998,-65.1446,-432.751,0,-421.01	1/2:264:0,191,73:0:0:191,73:6803,2589:-761.853,-207.355,-149.858,-554.849,0,-532.874	1/1:97:0,93,4:0:0:93,4:3306,144:-297.401,-27.9958,0,-285.74,-15.9782,-284.536	1/2:88:0,69,19:0:0:69,19:2447,675:-254.057,-54.6959,-33.9249,-199.713,0,-193.993	1/2:193:0,138,55:0:0:138,55:4940,1960:-561.161,-158.307,-116.765,-403.208,0,-386.651	1/2:177:0,146,31:0:0:146,31:5243,1070:-514.534,-86.8255,-42.8752,-428.055,0,-418.723	1/2:141:0,119,22:0:0:119,22:4256,782:-410.619,-63.6345,-27.8119,-347.338,0,-340.715	1/2:232:0,135,97:0:0:135,97:4823,3428:-669.263,-276.054,-235.415,-393.561,0,-364.361	1/2:111:0,69,41:0:0:69,41:2468,1449:-317.854,-116.603,-95.8321,-201.243,0,-188.901	1/2:102:0,64,36:0:0:64,36:2274,1272:-287.744,-102.441,-83.1749,-185.296,0,-174.459	1/2:121:0,72,49:0:0:72,49:2575,1735:-350.418,-140.447,-118.773,-210.325,0,-195.574	1/2:201:0,109,91:0:0:109,91:3849,3213:-572.976,-259.533,-226.72,-313.495,0,-286.101	1/2:82:0,44,38:0:0:44,38:1580,1344:-237.363,-108.471,-95.2255,-129.246,0,-117.807	1/2:91:0,53,38:0:0:53,38:1900,1326:-262.423,-107.451,-91.4962,-155.323,0,-143.884	1/2:155:0,108,47:0:0:108,47:3856,1673:-450.012,-135.641,-103.13,-314.725,0,-300.577	1/2:72:0,38,34:0:0:38,34:1349,1187:-205.674,-95.7544,-84.3153,-110.269,0,-100.034	1/2:54:0,37,17:0:0:37,17:1319,595:-155.995,-48.482,-37.3439,-107.864,0,-102.746	1/2:618:0,476,140:0:0:476,140:17034,4975:-1788.48,-399.533,-256.242,-1388.96,0,-1346.82	1/2:231:0,160,71:0:0:160,71:5674,2473:-662.024,-199.755,-151.59,-462.617,0,-441.244	1/1:162:0,147,15:0:0:147,15:5214,534:-469.048,-44.2514,0,-425.923,-0.773889,-421.408	1/2:59:0,41,18:0:0:41,18:1468,629:-170.799,-51.0757,-38.7334,-120.074,0,-114.655	1/2:138:0,104,34:0:0:104,34:3699,1203:-398.81,-97.3553,-66.0482,-301.807,0,-291.572	1/2:73:0,53,19:0:0:53,19:1867,681:-206.54,-54.5383,-38.5837,-151.994,0,-146.275	1/2:564:0,430,132:0:0:430,132:15330,4686:-1624.98,-375.365,-245.922,-1249.61,0,-1209.87	1/2:281:0,211,70:0:0:211,70:7523,2458:-811.936,-198.689,-135.172,-613.598,0,-592.526	1/2:59:0,28,31:0:0:28,31:1008,1096:-171.243,-88.991,-80.5621,-82.6075,0,-73.2756	1/2:313:1,258,53:1:35:258,53:9195,1876:-897.82,-148.636,-73.8177,-746.687,0,-733.581	1/2:289:0,211,77:0:0:211,77:7515,2716:-831.444,-218.919,-155.402,-612.516,0,-589.337	1/2:271:0,201,70:0:0:201,70:7107,2449:-775.141,-196.316,-135.809,-579.172,0,-558.099	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/2:13:0,10,3:0:0:10,3:360,108:-38.4835,-9.1075,-6.0972,-29.734,0,-28.8309	1/2:4:0,3,1:0:0:3,1:108,35:-12.0029,-3.18202,-2.27893,-9.17208,0,-8.87105	1/2:7:0,6,1:0:0:6,1:214,36:-20.7216,-3.27774,-1.47156,-17.8016,0,-17.5006	1/2:7:0,5,2:0:0:5,2:180,70:-20.6993,-6.00357,-4.49842,-15.0469,0,-14.4449	1/2:285:1,157,126:1:36:157,126:5624,4485:-814.792,-356.427,-312.103,-455.722,0,-420.73	1/2:447:0,393,52:0:0:393,52:13946,1820:-1282.16,-145.894,-27.5892,-1136.25,0,-1120.6	1/2:95:0,67,28:0:0:67,28:2356,992:-272.472,-80.6952,-60.5261,-192.129,0,-183.7	1/2:9:0,6,3:0:0:6,3:216,108:-26.7287,-9.10253,-7.29635,-17.9843,0,-17.0812	1/2:269:0,195,74:0:0:195,74:6937,2607:-775.441,-210.092,-151.391,-565.699,0,-543.423	1/2:39:0,27,12:0:0:27,12:964,432:-113.883,-35.2905,-27.1626,-78.949,0,-75.3367	1/2:211:0,187,24:0:0:187,24:6691,848:-614.573,-68.9519,-12.6592,-545.972,0,-538.748	1/2:107:0,67,40:0:0:67,40:2404,1426:-310.822,-114.731,-94.5622,-196.445,0,-184.403	1/2:100:0,62,38:0:0:62,38:2205,1356:-288.997,-109.301,-90.637,-180.05,0,-168.611	1/1:113:0,102,11:0:0:102,11:3626,370:-326.21,-30.7051,0,-296.472,-0.631328,-293.161	1/1:90:0,82,8:0:0:82,8:2920,269:-262.7,-24.6845,0,-241.015,-2.66349,-238.607	1/2:225:0,190,33:0:0:190,33:6799,1172:-647.828,-93.3861,-36.1904,-554.54,0,-544.606	1/2:142:0,106,36:0:0:106,36:3764,1247:-407.201,-100.495,-68.5861,-307.052,0,-296.215	1/2:281:0,198,82:0:0:198,82:7079,2893:-808.111,-230.894,-171.29,-577.251,0,-552.567	1/2:275:1,216,57:1:29:216,57:7695,2031:-788.199,-161.285,-98.5697,-625.007,0,-610.157	1/2:15:0,10,5:0:0:10,5:359,179:-44.1035,-14.8163,-11.806,-29.6433,0,-28.1382	1/1:267:0,244,23:0:0:244,23:8660,822:-779.043,-73.4513,0,-712.883,-6.93819,-705.96	1/2:258:0,221,37:0:0:221,37:7848,1324:-746.142,-106.727,-40.1995,-639.768,0,-628.63	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:212:1,143,66:1:36:143,66:5070,2323:-597.351,-184.602,-144.492,-410.174,0,-393.243	1/2:20:0,15,5:0:0:15,5:536,180:-58.6047,-14.9022,-10.3867,-44.0594,0,-42.5542	1/2:9:0,4,5:0:0:4,5:144,177:-26.386,-14.6323,-13.4282,-12.1095,0,-10.6043	1/2:51:0,35,16:0:0:35,16:1229,565:-145.973,-45.9471,-35.411,-100.376,0,-95.5594	1/2:184:0,151,31:0:0:151,31:5391,1098:-528.034,-88.5228,-43.0673,-439.546,0,-430.214	1/2:245:0,135,109:0:0:135,109:4809,3879:-704.641,-312.669,-272.03,-392.011,0,-359.199	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/2:417:0,204,213:0:0:204,213:7234,7523:-1193.91,-604.552,-543.142,-589.709,0,-525.59	1/2:382:0,312,66:0:0:312,66:11144,2358:-1098.08,-189.5,-95.5786,-908.643,0,-888.775	1/2:170:0,112,57:0:0:112,57:3985,1984:-484.506,-159.728,-126.012,-324.827,0,-307.668	1/2:118:0,98,19:0:0:98,19:3493,663:-338.196,-53.4654,-23.9645,-284.72,0,-279	1/2:286:0,220,63:0:0:220,63:7779,2217:-811.426,-177.85,-111.623,-633.6,0,-614.635	1/2:258:0,209,49:0:0:209,49:7471,1751:-750.269,-141.104,-78.1882,-609.519,0,-594.769	1/2:49:0,32,17:0:0:32,17:1139,599:-141.569,-48.7349,-39.102,-93.1854,0,-88.0679	1/2:110:0,76,34:0:0:76,34:2707,1209:-318.663,-98.0214,-75.1431,-220.996,0,-210.761	1/2:206:0,123,83:0:0:123,83:4412,2954:-597.67,-237.8,-200.773,-360.225,0,-335.239	1/2:49:0,26,23:0:0:26,23:932,800:-140.565,-64.5438,-56.717,-76.3721,0,-69.4484	1/2:175:0,123,51:0:0:123,51:4391,1803:-503.972,-145.986,-108.959,-358.106,0,-342.754	1/2:75:0,36,39:0:0:36,39:1288,1373:-216.175,-111.151,-100.314,-105.378,0,-93.6382	1/2:342:0,257,84:0:0:257,84:9107,2970:-981.271,-239.391,-162.027,-741.981,0,-716.695	1/2:236:0,186,50:0:0:186,50:6598,1759:-679.157,-141.592,-85.6009,-537.914,0,-522.862	1/1:272:0,259,13:0:0:259,13:9228,462:-830.142,-77.9668,0,-792.814,-40.2865,-788.901	1/2:156:0,86,70:0:0:86,70:3071,2458:-449.404,-199.027,-173.138,-250.73,0,-229.658	1/2:15:0,6,8:0:0:6,8:216,279:-40.2862,-22.6522,-20.846,-17.7187,0,-15.3105	1/2:125:0,96,29:0:0:96,29:3436,1028:-363.695,-83.4949,-54.5961,-280.554,0,-271.824	1/2:147:0,113,34:0:0:113,34:4028,1200:-425.566,-97.2235,-63.2071,-328.694,0,-318.459	1/2:209:0,144,64:0:0:144,64:5105,2253:-597.689,-181.79,-138.442,-415.948,0,-396.682	1/2:188:0,97,90:0:0:97,90:3480,3202:-541.332,-257.478,-228.278,-283.922,0,-256.83	1/2:118:0,74,44:0:0:74,44:2646,1578:-343.545,-127.792,-105.516,-216.109,0,-202.863	1/2:124:0,66,57:0:0:66,57:2348,1996:-351.488,-160.127,-140.259,-191.352,0,-174.193	1/2:223:0,141,81:0:0:141,81:5046,2885:-643.129,-231.643,-189.198,-411.48,0,-387.097	1/2:52:0,28,23:0:0:28,23:995,825:-148.017,-66.9361,-58.5073,-81.1623,0,-74.2386	1/2:135:0,84,51:0:0:84,51:2988,1803:-389.338,-145.825,-120.538,-243.865,0,-228.513	1/2:114:0,68,46:0:0:68,46:2440,1628:-330.981,-131.951,-111.481,-199.385,0,-185.538	1/2:96:0,68,28:0:0:68,28:2444,992:-279.681,-80.2898,-59.8197,-199.745,0,-191.316	1/2:211:0,140,71:0:0:140,71:5007,2519:-610.568,-202.288,-160.143,-408.633,0,-387.26	1/2:113:0,70,41:0:0:70,41:2503,1462:-322.017,-117.923,-96.8506,-204.09,0,-191.748	1/2:201:0,123,77:0:0:123,77:4380,2666:-569.952,-212.949,-175.922,-357.138,0,-333.959	1/2:115:0,69,45:0:0:69,45:2463,1584:-328.203,-127.402,-106.631,-200.833,0,-187.287
chr05	18573346	.	G	A	46473.1	PASS	AB=0.284045;ABP=5791.62;AC=86;AF=0.457447;AN=188;AO=4121;CIGAR=1X;DP=15192;DPB=15192;DPRA=25.0088;EPP=8951.65;EPPR=24039;GTI=17;LEN=1;MEANALT=1.02198;MQM=47.0682;MQMR=59.9604;NS=94;NUMALT=1;ODDS=6.11143;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147370;QR=396143;RO=11069;RPL=4121;RPP=8951.65;RPPR=24039;RPR=0;RUN=1;SAF=0;SAP=8951.65;SAR=4121;SRF=0;SRP=24039;SRR=11069;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:43,9:43:1540:9:324:-13.6923,0,-123.24	0/1:265:220,45:220:7908:45:1585:-61.3074,0,-631.953	0/1:195:157,38:157:5604:38:1355:-61.1196,0,-445.755	0/1:268:194,73:194:6960:73:2605:-149.587,0,-545.728	0/0:95:91,4:91:3238:4:144:0,-15.3761,-278.418	0/1:87:68,19:68:2424:19:680:-34.5029,0,-192.227	0/1:192:138,54:138:4960:54:1936:-114.889,0,-388.749	0/1:177:147,30:147:5264:30:1080:-43.7061,0,-420.614	0/1:141:120,21:120:4281:21:756:-25.4717,0,-342.964	0/1:233:136,97:136:4880:97:3480:-239.58,0,-369.125	0/1:110:70,40:70:2507:40:1432:-94.6059,0,-192.768	0/1:101:65,36:65:2331:36:1284:-84.4128,0,-179.645	0/1:121:72,49:72:2592:49:1756:-120.562,0,-197.103	0/1:200:110,90:110:3918:90:3199:-225.697,0,-292.608	0/1:81:44,37:44:1576:37:1328:-94.0625,0,-117.748	0/1:90:53,37:53:1908:37:1328:-91.9046,0,-144.905	0/1:151:106,45:106:3804:45:1612:-98.8434,0,-297.101	0/1:72:39,33:39:1404:33:1188:-84.977,0,-104.985	0/1:54:37,17:37:1319:17:608:-38.5104,0,-102.746	0/1:612:472,140:472:16889:140:5016:-261.519,0,-1335.42	0/1:229:158,71:158:5652:71:2548:-158.614,0,-439.842	0/0:164:149,15:149:5317:15:540:0,-0.854265,-430.15	0/1:60:42,18:42:1504:18:644:-39.7448,0,-117.593	0/1:139:105,34:105:3749:34:1216:-66.8767,0,-295.766	0/1:73:54,19:54:1936:19:680:-38.5524,0,-152.541	0/1:559:429,130:429:15350:130:4656:-244.476,0,-1212.93	0/1:275:208,67:208:7444:67:2388:-130.572,0,-587.222	0/1:60:29,31:29:1044:31:1098:-80.4103,0,-76.213	0/1:316:263,52:263:9398:52:1868:-71.7563,0,-750.541	0/1:286:209,77:209:7488:77:2752:-159.296,0,-587.866	0/1:273:203,70:203:7242:70:2499:-138.858,0,-569.541	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:13:10,3:10:360:3:108:-6.0972,0,-28.8309	0/1:4:3,1:3:108:1:32:-1.98731,0,-8.87105	0/1:7:6,1:6:216:1:36:-1.47156,0,-17.6833	0/1:7:5,2:5:180:2:72:-4.68109,0,-14.4449	0/1:280:157,123:157:5640:123:4412:-306.512,0,-423.43	0/1:447:395,52:395:14065:52:1841:-29.293,0,-1130.91	0/1:95:67,28:67:2400:28:1004:-61.5428,0,-187.659	0/1:9:6,3:6:216:3:108:-7.29635,0,-17.0812	0/1:270:198,72:198:7089:72:2576:-148.053,0,-556.789	0/1:40:27,13:27:972:13:468:-29.7807,0,-75.7567	0/1:207:184,23:184:6593:23:816:-10.9815,0,-531.135	0/1:108:68,40:68:2440:40:1424:-94.086,0,-187.341	0/1:103:66,37:66:2360:37:1319:-86.3112,0,-181.653	0/1:112:101,11:101:3632:11:392:-1.60702,0,-293.368	0/0:90:82,8:82:2921:8:269:0,-2.66724,-238.699	0/1:228:195,33:195:6992:33:1169:-35.4551,0,-560.707	0/1:140:104,36:104:3740:36:1269:-71.0856,0,-294.655	0/1:283:201,82:201:7208:82:2928:-173.142,0,-563.581	0/1:272:217,55:217:7749:55:1972:-93.9116,0,-615.563	0/1:15:10,5:10:360:5:180:-11.8919,0,-28.2289	0/0:264:241,23:241:8644:23:828:0,-5.58734,-704.059	0/1:261:224,37:224:8020:37:1332:-39.8781,0,-643.251	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:209:143,66:143:5104:66:2356:-147.837,0,-396.586	0/1:20:15,5:15:540:5:180:-10.3867,0,-42.9159	0/1:9:4,5:4:144:5:180:-13.6812,0,-10.6043	0/1:50:34,16:34:1212:16:576:-36.6507,0,-94.3348	0/1:185:154,31:154:5505:31:1108:-43.3423,0,-439.785	0/1:245:135,110:135:4824:110:3922:-275.406,0,-360.561	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:421:208,213:208:7448:213:7625:-550.077,0,-543.623	0/1:378:314,64:314:11248:64:2292:-89.9579,0,-898.409	0/1:168:110,58:110:3924:58:2076:-134.584,0,-302.781	0/1:120:101,19:101:3601:19:680:-24.8813,0,-288.172	0/1:281:218,63:218:7785:63:2254:-115.726,0,-616.084	0/1:256:207,49:207:7396:49:1756:-79.2252,0,-588.625	0/1:49:32,17:32:1152:17:608:-39.8849,0,-89.2397	0/1:109:76,33:76:2705:33:1188:-73.5561,0,-210.881	0/1:204:123,81:123:4411:81:2908:-197.536,0,-335.751	0/1:48:26,22:26:936:22:784:-55.3786,0,-70.11	0/1:175:124,51:124:4440:51:1824:-110.599,0,-347.091	0/1:75:37,38:37:1328:38:1364:-99.3413,0,-97.2368	0/1:337:255,82:255:9121:82:2917:-158.685,0,-719.336	0/1:236:186,50:186:6645:50:1784:-87.7699,0,-527.085	0/0:269:257,12:257:9204:12:432:0,-42.2706,-789.624	0/1:158:88,70:88:3137:70:2504:-176.573,0,-234.992	0/1:15:7,8:7:248:8:284:-21.2577,0,-18.1454	0/1:127:97,30:97:3480:30:1076:-58.2943,0,-275.179	0/1:147:113,34:113:4029:34:1216:-64.6208,0,-318.547	0/1:212:148,64:148:5262:64:2292:-140.857,0,-409.898	0/1:186:97,89:97:3480:89:3191:-227.471,0,-257.417	0/1:116:74,42:74:2656:42:1504:-99.5244,0,-204.362	0/1:124:67,57:67:2400:57:2031:-143.215,0,-178.929	0/1:224:143,81:143:5120:81:2899:-190.034,0,-393.022	0/1:53:30,23:30:1068:23:820:-57.7387,0,-80.4775	0/1:137:86,51:86:3080:51:1824:-121.738,0,-236.186	0/1:113:68,45:68:2448:45:1599:-109.034,0,-186.558	0/1:95:67,28:67:2408:28:1008:-61.523,0,-188.378	0/1:212:142,70:142:5096:70:2508:-158.589,0,-394.805	0/1:114:73,41:73:2619:41:1476:-97.3653,0,-201.639	0/1:195:122,73:122:4367:73:2604:-171.618,0,-334.5	0/1:114:70,44:70:2520:44:1580:-106.264,0,-192.734
chr05	18573846	.	A	T	49529.3	PASS	AB=0.307228;ABP=4606.75;AC=94;AF=0.5;AN=188;AO=4382;CIGAR=1X;DP=14263;DPB=14263;DPRA=0;EPP=9518.4;EPPR=21428.9;GTI=0;LEN=1;MEANALT=1.11702;MQM=42.5317;MQMR=59.8903;NS=94;NUMALT=1;ODDS=18.0506;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156812;QR=352889;RO=9867;RPL=0;RPP=9518.4;RPPR=21428.9;RPR=4382;RUN=1;SAF=4382;SAP=9518.4;SAR=0;SRF=9867;SRP=21428.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:39,11:39:1385:11:392:-19.7583,0,-109.895	0/1:133:106,27:106:3789:27:972:-45.8756,0,-300.848	0/1:368:309,57:309:10928:57:2043:-68.013,0,-872.866	0/1:290:165,125:165:5924:125:4476:-305.113,0,-445.939	0/1:65:53,12:53:1908:12:432:-18.7754,0,-152.375	0/1:64:36,28:36:1284:28:1004:-69.5478,0,-96.5975	0/1:207:180,27:180:6391:27:972:-23.5994,0,-512.54	0/1:178:91,87:91:3264:87:3128:-220.567,0,-240.397	0/1:84:53,31:53:1904:31:1112:-72.9454,0,-146.351	0/1:122:80,42:80:2880:42:1477:-92.4487,0,-222.71	0/1:212:129,83:129:4621:83:2970:-195.595,0,-352.233	0/1:139:81,58:81:2881:58:2070:-137.719,0,-217.683	0/1:121:81,40:81:2912:40:1427:-87.9334,0,-225.872	0/1:235:184,51:184:6596:51:1814:-89.1037,0,-522.971	0/1:143:75,68:75:2692:68:2436:-170.585,0,-199.477	0/1:154:84,68:84:3012:68:2440:-167.789,0,-225.194	0/1:154:107,46:107:3832:46:1648:-97.4603,0,-298.664	0/1:118:81,37:81:2912:37:1328:-81.5822,0,-226.772	0/1:128:81,46:81:2904:46:1628:-104.335,0,-223.005	0/1:261:233,28:233:8258:28:987:-8.48368,0,-664.471	0/1:133:59,74:59:2116:74:2648:-192.25,0,-150.649	0/1:118:103,15:103:3692:15:536:-11.8845,0,-296.959	0/1:91:61,30:61:2173:30:1076:-67.7708,0,-168.413	0/1:84:69,15:69:2476:15:540:-22.5992,0,-197.798	0/1:136:84,52:84:2985:52:1841:-121.59,0,-227.942	0/1:506:316,190:316:11288:190:6805:-443.659,0,-863.388	0/1:397:322,75:322:11462:75:2680:-115.446,0,-911.563	0/1:59:41,18:41:1472:18:648:-39.6317,0,-115.012	0/1:380:340,39:340:12128:39:1395:-8.55217,0,-976.888	0/1:135:108,27:108:3864:27:957:-42.8257,0,-307.316	0/1:174:111,63:111:3954:63:2264:-146.737,0,-303.67	0/1:5:4,1:4:144:1:36:-1.39761,0,-11.8085	0/1:20:14,6:14:500:6:216:-13.3449,0,-39.3156	0/1:3:2,1:2:72:1:36:-1.99967,0,-5.93363	0/1:10:7,3:7:248:3:108:-6.83143,0,-19.6539	0/1:10:4,6:4:144:6:216:-16.3552,0,-10.3033	0/1:479:278,201:278:9946:201:7202:-488.065,0,-750.579	0/1:212:151,61:151:5412:61:2192:-129.265,0,-423.257	0/1:175:118,57:118:4244:57:2035:-124.834,0,-329.439	0/1:5:4,1:4:144:1:36:-2.01586,0,-11.8085	0/1:179:143,34:143:5128:34:1220:-52.9079,0,-408.023	0/1:75:41,34:41:1476:34:1224:-85.5177,0,-110.559	0/1:87:47,40:47:1673:40:1424:-99.1282,0,-124.626	0/1:112:85,27:85:3060:27:972:-52.1608,0,-241.912	0/1:128:72,56:72:2573:56:2004:-137.73,0,-193.286	0/1:91:50,41:50:1796:41:1468:-101.128,0,-134.528	0/1:193:99,94:99:3556:94:3376:-237.277,0,-262.148	0/1:208:162,46:162:5801:46:1652:-81.1975,0,-459.474	0/1:132:82,50:82:2936:50:1788:-117.538,0,-224.737	0/1:253:168,85:168:5998:85:3052:-191.242,0,-463.761	0/1:108:83,24:83:2988:24:864:-43.8362,0,-236.553	0/1:18:10,8:10:356:8:288:-20.2241,0,-26.9627	0/1:309:220,89:220:7851:89:3204:-186.47,0,-613.59	0/1:64:33,31:33:1180:31:1108:-77.5293,0,-87.2421	0/1:25:22,3:22:777:3:108:-2.33307,0,-62.7154	0/1:145:123,22:123:4416:22:788:-25.5391,0,-353.534	0/1:37:26,11:26:932:11:396:-23.5099,0,-73.0608	0/1:5:2,3:2:72:3:108:-7.77665,0,-5.33157	0/1:17:14,3:14:504:3:108:-4.74131,0,-40.552	0/1:127:65,62:65:2336:62:2204:-155.777,0,-172.268	0/1:234:173,61:173:6220:61:2192:-122.39,0,-489.423	0/1:7:6,1:6:216:1:36:-1.4138,0,-17.6833	0/1:182:145,37:145:5178:37:1323:-62.0634,0,-411.151	0/1:231:181,50:181:6466:50:1777:-87.2764,0,-512.486	0/1:87:66,21:66:2372:21:752:-40.3289,0,-187.526	0/1:113:95,18:95:3397:18:648:-22.8162,0,-271.927	0/1:138:92,46:92:3288:46:1652:-103.211,0,-254.595	0/1:54:29,25:29:1032:25:891:-61.5867,0,-76.9345	0/1:100:63,37:63:2260:37:1323:-84.2154,0,-173.242	0/1:86:60,26:60:2133:26:928:-55.0081,0,-166.348	0/1:189:148,41:148:5320:41:1476:-69.915,0,-422.037	0/1:26:13,13:13:468:13:464:-32.9181,0,-34.6329	0/1:366:231,135:231:8224:135:4792:-310.469,0,-629.689	0/1:156:90,66:90:3209:66:2376:-159.733,0,-242.071	0/1:335:240,95:240:8605:95:3400:-198.988,0,-673.28	0/1:184:130,54:130:4649:54:1940:-115.664,0,-363.181	0/1:257:191,66:191:6783:66:2359:-129.481,0,-533.029	0/1:187:121,66:121:4329:66:2372:-152.264,0,-332.696	0/1:6:3,3:3:108:3:108:-8.05264,0,-8.26899	0/1:199:128,71:128:4577:71:2537:-162.92,0,-352.166	0/1:213:191,22:191:6829:22:788:-5.24893,0,-550.479	0/1:343:260,83:260:9271:83:2965:-157.685,0,-731.019	0/1:129:77,50:77:2768:50:1796:-118.962,0,-210.773	0/1:139:93,45:93:3325:45:1612:-99.8179,0,-257.564	0/1:112:79,33:79:2836:33:1177:-69.6434,0,-221.763	0/1:216:162,54:162:5828:54:1931:-102.999,0,-459.234	0/1:74:66,8:66:2368:8:279:-2.65863,0,-191.08	0/1:189:113,76:113:4056:76:2728:-182.789,0,-308.254	0/1:187:81,105:81:2900:105:3748:-272.623,0,-204.887	0/1:198:99,99:99:3564:99:3548:-251.315,0,-261.362	0/1:269:187,82:187:6720:82:2924:-176.337,0,-523.895	0/1:109:91,18:91:3268:18:640:-23.8785,0,-261.515	0/1:81:51,30:51:1824:30:1065:-69.4479,0,-140.058	0/1:196:121,75:121:4348:75:2686:-176.345,0,-332.491
chr05	18573854	.	T	G	184281	PASS	AB=0.691601;ABP=4551.34;AC=94;AF=0.5;AN=188;AO=9865;CIGAR=1X;DP=14264;DPB=14264;DPRA=0;EPP=20701.2;EPPR=9468.62;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.8823;MQMR=42.5559;NS=94;NUMALT=1;ODDS=29.8274;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=352820;QR=157517;RO=4395;RPL=84;RPP=20701.2;RPPR=9468.62;RPR=9781;RUN=1;SAF=9865;SAP=21424.6;SAR=0;SRF=4395;SRP=9546.63;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:10,38:10:360:38:1368:-108.971,0,-17.5031	0/1:132:27,105:27:968:105:3734:-296.482,0,-45.8566	0/1:372:56,314:56:2012:314:11219:-897.822,0,-64.0705	0/1:289:124,165:124:4448:165:5892:-443.391,0,-302.919	0/1:65:12,53:12:432:53:1908:-152.375,0,-18.7754	0/1:64:28,36:28:1004:36:1296:-97.678,0,-69.5478	0/1:201:26,175:26:936:175:6267:-503.209,0,-22.2367	0/1:179:88,90:88:3144:90:3224:-236.587,0,-221.961	0/1:84:32,52:32:1148:52:1860:-142.393,0,-75.4056	0/1:123:43,80:43:1527:80:2867:-221.239,0,-96.2821	0/1:210:81,129:81:2908:129:4633:-353.915,0,-190.935	0/1:137:56,81:56:1996:81:2892:-219.275,0,-131.693	0/1:117:36,81:36:1292:81:2898:-225.816,0,-77.2285	0/1:229:48,181:48:1724:181:6471:-513.53,0,-82.3799	0/1:142:68,74:68:2448:74:2656:-196.539,0,-171.544	0/1:156:67,89:67:2404:89:3190:-240.362,0,-163.993	0/1:158:48,110:48:1728:110:3950:-308.125,0,-102.777	0/1:118:36,82:36:1292:82:2923:-227.78,0,-78.575	0/1:128:46,82:46:1652:82:2948:-227.021,0,-106.022	0/1:264:27,237:27:964:237:8458:-681.587,0,-5.24182	0/1:135:75,60:75:2696:60:2137:-151.935,0,-195.818	0/1:118:15,103:15:540:103:3673:-295.251,0,-12.2056	0/1:89:30,59:30:1080:59:2101:-162.554,0,-68.6277	0/1:84:15,69:15:540:69:2465:-196.807,0,-22.5992	0/1:135:50,85:50:1781:85:3057:-234.719,0,-115.997	0/1:509:191,318:191:6836:318:11332:-866.439,0,-445.012	0/1:407:77,330:77:2763:330:11772:-936.749,0,-119.634	0/1:59:18,41:18:648:41:1468:-114.652,0,-39.6317	0/1:387:45,342:45:1605:342:12243:-985.189,0,-25.1175	0/1:132:26,106:26:932:106:3782:-300.84,0,-41.8275	0/1:175:64,111:64:2304:111:3988:-306.428,0,-149.925	0/1:5:1,4:1:36:4:140:-11.4394,0,-1.39761	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.3449	0/1:3:1,2:1:36:2:72:-5.93363,0,-1.99967	0/1:10:3,7:3:108:7:252:-20.0187,0,-6.83143	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.3552	0/1:477:198,279:198:7100:279:10013:-757.206,0,-478.854	0/1:215:60,154:60:2136:154:5504:-430.735,0,-123.494	0/1:171:55,116:55:1976:116:4160:-323.088,0,-120.42	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.01586	0/1:180:35,145:35:1232:145:5189:-412.962,0,-53.5081	0/1:77:35,42:35:1247:42:1493:-111.483,0,-87.0138	0/1:89:41,48:41:1472:48:1704:-126.827,0,-102.68	0/1:114:28,86:28:1004:86:3092:-244.189,0,-54.4076	0/1:125:56,69:56:1999:69:2480:-185.824,0,-138.203	0/1:91:43,48:43:1544:48:1724:-128.051,0,-107.855	0/1:195:96,99:96:3433:99:3545:-260.557,0,-241.591	0/1:211:47,164:47:1692:164:5855:-462.948,0,-83.7829	0/1:132:49,83:49:1760:83:2980:-228.695,0,-114.75	0/1:252:87,165:87:3128:165:5876:-453.09,0,-198.207	0/1:107:24,83:24:864:83:2922:-230.973,0,-44.1957	0/1:19:9,10:9:320:10:360:-27.0247,0,-22.7694	0/1:304:90,214:90:3232:214:7685:-600.166,0,-190.018	0/1:64:31,33:31:1112:33:1165:-85.8891,0,-77.8492	0/1:24:3,21:3:108:21:729:-58.6981,0,-2.6341	0/1:147:26,121:26:932:121:4321:-344.757,0,-37.6656	0/1:39:12,27:12:432:27:972:-76.0577,0,-25.5157	0/1:5:3,2:3:108:2:57:-3.90816,0,-7.77665	0/1:18:4,14:4:144:14:500:-39.8891,0,-7.60919	0/1:126:62,64:62:2205:64:2285:-167.98,0,-156.079	0/1:238:62,176:62:2228:176:6291:-494.614,0,-124.335	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.4138	0/1:183:37,146:37:1332:146:5217:-414.181,0,-62.5132	0/1:232:51,181:51:1827:181:6469:-512.445,0,-91.3172	0/1:89:21,68:21:752:68:2444:-193.401,0,-39.7269	0/1:108:18,90:18:648:90:3224:-257.871,0,-24.3213	0/1:139:47,92:47:1646:92:3275:-253.125,0,-101.994	0/1:54:25,29:25:896:29:1044:-78.0158,0,-62.0184	0/1:100:36,64:36:1296:64:2269:-174.337,0,-82.5421	0/1:85:25,60:25:896:60:2115:-165.026,0,-52.4891	0/1:190:42,148:42:1496:148:5294:-419.398,0,-71.5047	0/1:26:13,13:13:468:13:468:-34.6329,0,-32.9921	0/1:368:132,236:132:4732:236:8432:-647.915,0,-303.93	0/1:157:67,90:67:2412:90:3228:-243.48,0,-162.044	0/1:333:95,238:95:3404:238:8485:-663.336,0,-199.909	0/1:178:52,126:52:1864:126:4520:-353.383,0,-110.877	0/1:256:64,192:64:2264:192:6900:-543.85,0,-121.634	0/1:187:66,121:66:2376:121:4340:-333.361,0,-152.627	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.05264	0/1:200:70,130:70:2512:130:4629:-356.544,0,-160.1	0/1:211:23,188:23:828:188:6735:-542.647,0,-9.12408	0/1:339:82,257:82:2944:257:9168:-723.015,0,-157.003	0/1:128:53,75:53:1904:75:2688:-203.633,0,-128.52	0/1:140:46,94:46:1656:94:3364:-260.832,0,-103.384	0/1:111:33,78:33:1180:78:2801:-218.915,0,-69.8561	0/1:215:53,162:53:1904:162:5800:-457.302,0,-101.179	0/1:74:8,66:8:288:66:2352:-189.643,0,-3.36644	0/1:188:76,112:76:2712:112:4005:-303.967,0,-181.765	0/1:184:106,78:106:3804:78:2808:-197.565,0,-278.738	0/1:203:102,101:102:3664:101:3632:-265.974,0,-259.753	0/1:271:85,186:85:3056:186:6688:-520.407,0,-187.007	0/1:108:18,90:18:644:90:3224:-257.842,0,-24.5693	0/1:83:31,52:31:1108:52:1872:-143.774,0,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chr05	18573861	.	A	G	214980	PASS	AB=0.693078;ABP=4592.28;AC=94;AF=0.5;AN=188;AO=9823;CIGAR=1X;DP=14173;DPB=14173;DPRA=0;EPP=10457.6;EPPR=9336.24;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.8956;MQMR=42.6343;NS=94;NUMALT=1;ODDS=29.3625;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=350877;QR=154980;RO=4342;RPL=8350;RPP=10457.6;RPPR=9336.24;RPR=1473;RUN=1;SAF=9823;SAP=21333.4;SAR=0;SRF=4342;SRP=9431.54;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:10,38:10:356:38:1360:-108.251,0,-17.2278	0/1:129:24,105:24:864:105:3755:-298.995,0,-37.573	0/1:369:55,314:55:1980:314:11225:-899.024,0,-61.8814	0/1:290:125,165:125:4456:165:5903:-444.053,0,-303.753	0/1:64:12,52:12:417:52:1851:-147.547,0,-17.7832	0/1:64:28,36:28:1000:36:1287:-96.8669,0,-69.1978	0/1:205:27,178:27:964:178:6344:-508.952,0,-23.5613	0/1:177:88,88:88:3148:88:3140:-229.483,0,-222.702	0/1:85:32,53:32:1140:53:1904:-146.05,0,-74.711	0/1:118:42,76:42:1487:76:2723:-209.792,0,-95.0119	0/1:212:84,128:84:2989:128:4592:-349.625,0,-196.753	0/1:140:59,81:59:2111:81:2886:-217.832,0,-140.609	0/1:116:39,77:39:1400:77:2745:-212.353,0,-87.7874	0/1:230:49,181:49:1749:181:6440:-510.444,0,-84.0411	0/1:141:66,75:66:2360:75:2671:-198.19,0,-164.53	0/1:157:67,90:67:2382:90:3210:-241.859,0,-161.643	0/1:159:49,110:49:1739:110:3885:-301.976,0,-103.885	0/1:119:38,81:38:1364:81:2894:-224.869,0,-84.3109	0/1:127:44,83:44:1576:83:2963:-228.672,0,-99.5778	0/1:262:27,235:27:968:235:8409:-677.785,0,-6.23378	0/1:130:70,60:70:2512:60:2140:-153.712,0,-180.638	0/1:117:14,103:14:500:103:3668:-295.102,0,-9.01638	0/1:89:28,61:28:984:61:2169:-168.669,0,-60.3972	0/1:85:15,70:15:536:70:2497:-199.39,0,-21.977	0/1:136:51,84:51:1820:84:3009:-230.042,0,-119.132	0/1:508:191,317:191:6798:317:11323:-865.944,0,-442.96	0/1:401:76,325:76:2728:325:11571:-920.331,0,-118.385	0/1:59:19,40:19:684:40:1432:-111.414,0,-42.8705	0/1:382:39,342:39:1396:342:12220:-984.555,0,-8.12367	0/1:133:27,106:27:968:106:3800:-302.16,0,-44.3943	0/1:175:63,112:63:2239:112:3994:-306.97,0,-144.409	0/1:5:1,4:1:36:4:144:-11.8085,0,-1.39761	0/1:19:6,13:6:201:13:468:-36.7401,0,-12.3409	0/1:3:1,2:1:36:2:72:-5.93363,0,-1.99967	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.5304	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.3552	0/1:472:193,278:193:6880:278:9948:-753.108,0,-461.726	0/1:207:55,151:55:1960:151:5412:-424.703,0,-110.42	0/1:172:55,117:55:1960:117:4192:-325.684,0,-118.771	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.01586	0/1:177:34,143:34:1204:143:5110:-406.76,0,-52.7384	0/1:76:35,41:35:1252:41:1472:-109.898,0,-87.746	0/1:85:38,47:38:1360:47:1671:-125.078,0,-94.0573	0/1:113:27,86:27:972:86:3060:-241.611,0,-51.8598	0/1:124:53,71:53:1888:71:2531:-190.713,0,-128.805	0/1:94:44,50:44:1572:50:1792:-133.265,0,-109.727	0/1:189:92,97:92:3283:97:3459:-254.626,0,-230.738	0/1:207:48,159:48:1683:159:5675:-448.085,0,-84.4126	0/1:131:48,83:48:1720:83:2971:-228.186,0,-112.419	0/1:247:84,162:84:2993:162:5770:-445,0,-187.89	0/1:107:23,84:23:828:84:3008:-238.713,0,-41.0268	0/1:19:10,9:10:356:9:320:-23.4228,0,-26.0091	0/1:304:90,214:90:3203:214:7663:-598.191,0,-188.667	0/1:64:31,33:31:1108:33:1180:-87.2421,0,-77.5293	0/1:25:3,22:3:108:22:771:-62.1821,0,-2.33307	0/1:147:25,122:25:877:122:4351:-347.515,0,-32.8893	0/1:36:10,26:10:356:26:932:-73.3618,0,-20.3192	0/1:5:3,2:3:104:2:63:-4.478,0,-7.44607	0/1:18:4,14:4:144:14:500:-39.8891,0,-7.60919	0/1:124:60,64:60:2125:64:2284:-168.493,0,-149.783	0/1:238:61,177:61:2188:177:6300:-495.429,0,-121.062	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.71483	0/1:178:36,142:36:1288:142:5092:-404.81,0,-60.2099	0/1:226:50,176:50:1796:176:6311:-500.019,0,-90.3852	0/1:88:20,68:20:716:68:2444:-193.702,0,-36.8589	0/1:109:18,91:18:644:91:3256:-260.449,0,-23.6996	0/1:136:46,90:46:1637:90:3225:-249.532,0,-102.624	0/1:52:24,28:24:860:28:1008:-75.3794,0,-59.4513	0/1:103:38,65:38:1364:65:2285:-174.874,0,-86.9126	0/1:85:26,59:26:928:59:2120:-165.481,0,-55.3781	0/1:192:41,151:41:1456:151:5383:-426.803,0,-67.6296	0/1:26:13,13:13:468:13:464:-34.2707,0,-32.9921	0/1:365:133,232:133:4744:232:8316:-638.422,0,-306.088	0/1:154:65,89:65:2315:89:3181:-240.155,0,-155.278	0/1:334:98,236:98:3500:236:8408:-656.026,0,-208.119	0/1:181:52,129:52:1864:129:4613:-360.846,0,-109.877	0/1:253:63,190:63:2237:190:6767:-532.792,0,-119.597	0/1:189:67,121:67:2396:121:4314:-330.82,0,-153.822	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.72207	0/1:198:69,129:69:2464:129:4607:-355.167,0,-156.396	0/1:212:24,188:24:856:188:6716:-540.647,0,-11.4215	0/1:337:79,258:79:2836:258:9253:-731.25,0,-147.541	0/1:126:51,75:51:1828:75:2668:-202.434,0,-122.465	0/1:139:46,93:46:1644:93:3325:-257.623,0,-102.726	0/1:111:34,77:34:1216:77:2724:-211.988,0,-73.0949	0/1:215:54,160:54:1940:160:5743:-452.352,0,-104.141	0/1:74:8,66:8:288:66:2327:-187.392,0,-3.36644	0/1:187:76,111:76:2712:111:3964:-300.582,0,-182.284	0/1:184:103,81:103:3696:81:2912:-206.92,0,-269.165	0/1:196:97,99:97:3451:99:3560:-261.605,0,-243.36	0/1:274:86,188:86:3072:188:6683:-519.059,0,-187.677	0/1:106:17,89:17:612:89:3184:-254.847,0,-22.3232	0/1:79:30,49:30:1072:49:1755:-134.452,0,-70.9797	0/1:191:72,119:72:2568:119:4280:-327.879,0,-167.807
chr05	18573882	.	A	G	173688	PASS	AB=0.687619;ABP=4327.26;AC=94;AF=0.5;AN=188;AO=9725;CIGAR=1X;DP=14143;DPB=14143;DPRA=0;EPP=21120.6;EPPR=9590.06;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9056;MQMR=42.5454;NS=94;NUMALT=1;ODDS=25.4658;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=343519;QR=157676;RO=4415;RPL=9724;RPP=21111.9;RPPR=9590.06;RPR=1;RUN=1;SAF=9724;SAP=21111.9;SAR=1;SRF=4415;SRP=9590.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:11,37:11:392:37:1305:-103.3,0,-20.3135	0/1:129:27,102:27:972:102:3566:-282.279,0,-47.0797	0/1:364:56,308:56:2012:308:10949:-875.715,0,-66.1841	0/1:289:128,161:128:4548:161:5637:-420.455,0,-311.914	0/1:64:11,53:11:392:53:1865:-148.806,0,-15.5855	0/1:64:28,36:28:1008:36:1283:-96.5067,0,-69.8678	0/1:197:27,170:27:972:170:6007:-481.066,0,-26.6097	0/1:177:87,90:87:3108:90:3154:-230.804,0,-220.14	0/1:83:32,51:32:1148:51:1815:-138.645,0,-75.7066	0/1:121:41,80:41:1463:80:2860:-221.213,0,-91.5861	0/1:209:81,128:81:2887:128:4496:-341.9,0,-189.722	0/1:136:56,80:56:2004:80:2834:-213.106,0,-134.336	0/1:120:39,81:39:1400:81:2819:-217.824,0,-85.8326	0/1:229:49,180:49:1760:180:6280:-496.363,0,-85.3069	0/1:144:69,75:69:2467:75:2662:-196.477,0,-172.861	0/1:155:67,88:67:2345:88:3072:-230.05,0,-159.772	0/1:154:46,108:46:1648:108:3818:-297.459,0,-97.5816	0/1:119:37,82:37:1328:82:2917:-226.941,0,-81.4429	0/1:127:46,81:46:1652:81:2793:-213.378,0,-106.235	0/1:260:28,232:28:996:232:8204:-659.738,0,-9.29499	0/1:131:73,58:73:2591:58:2043:-144.682,0,-187.697	0/1:111:15,96:15:540:96:3407:-273.429,0,-14.3128	0/1:91:30,61:30:1068:61:2153:-166.639,0,-67.0658	0/1:82:15,67:15:540:67:2361:-188.062,0,-23.2013	0/1:137:52,85:52:1843:85:3030:-231.688,0,-121.205	0/1:503:193,310:193:6902:310:10965:-835.297,0,-452.741	0/1:401:78,323:78:2775:323:11423:-907.214,0,-122.66	0/1:59:18,41:18:644:41:1453:-113.3,0,-39.3109	0/1:387:41,346:41:1464:346:12268:-987.461,0,-12.6256	0/1:135:28,107:28:985:107:3806:-302.1,0,-45.3549	0/1:173:63,110:63:2260:110:3897:-298.846,0,-146.719	0/1:5:1,4:1:36:4:144:-11.8085,0,-1.39761	0/1:20:6,14:6:216:14:500:-39.3156,0,-13.3449	0/1:3:1,2:1:36:2:72:-5.93363,0,-1.99967	0/1:11:3,8:3:108:8:284:-22.592,0,-6.5304	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.4874	0/1:473:197,276:197:7047:276:9699:-730.216,0,-475.748	0/1:214:61,153:61:2180:153:5393:-421.081,0,-127.705	0/1:174:56,118:56:1999:118:4118:-318.43,0,-121.587	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.01586	0/1:179:35,144:35:1256:144:5102:-405.438,0,-55.8105	0/1:75:34,41:34:1203:41:1441:-107.407,0,-83.8073	0/1:84:38,46:38:1360:46:1641:-122.682,0,-94.3223	0/1:110:28,82:28:1008:82:2878:-226.142,0,-55.9318	0/1:125:55,70:55:1937:70:2483:-186.095,0,-132.895	0/1:92:44,48:44:1558:48:1720:-127.391,0,-108.972	0/1:192:96,96:96:3444:96:3359:-244.729,0,-243.777	0/1:211:50,161:50:1796:161:5704:-449.614,0,-92.9705	0/1:129:50,79:50:1779:79:2788:-212.328,0,-117.433	0/1:250:86,164:86:3075:164:5821:-448.745,0,-194.175	0/1:103:24,79:24:864:79:2812:-222.286,0,-45.3998	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.0921	0/1:305:91,213:91:3247:213:7542:-587.022,0,-191.712	0/1:63:31,32:31:1112:32:1140:-83.9443,0,-78.1502	0/1:23:3,20:3:108:20:705:-56.8407,0,-2.93513	0/1:144:27,117:27:959:117:4131:-328.626,0,-40.986	0/1:38:12,26:12:423:26:932:-72.7597,0,-25.0612	0/1:5:3,2:3:108:2:72:-5.33157,0,-7.77665	0/1:18:4,14:4:144:14:504:-40.251,0,-7.60919	0/1:126:62,64:62:2203:64:2231:-163.121,0,-155.976	0/1:235:62,173:62:2216:173:6041:-473.058,0,-124.3	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.4138	0/1:183:37,146:37:1320:146:5179:-411.136,0,-61.554	0/1:226:52,174:52:1853:174:6173:-487.61,0,-95.5087	0/1:88:21,66:21:748:66:2372:-187.166,0,-39.6492	0/1:111:18,93:18:648:93:3255:-259.757,0,-23.4183	0/1:137:47,90:47:1662:90:3213:-248.15,0,-103.984	0/1:53:25,28:25:877:28:991:-73.5456,0,-60.7122	0/1:101:38,63:38:1351:63:2205:-168.253,0,-86.5397	0/1:86:26,60:26:932:60:2144:-167.339,0,-55.3972	0/1:188:42,146:42:1480:146:5130:-405.254,0,-70.7107	0/1:26:14,12:14:500:12:432:-31.3944,0,-35.8402	0/1:363:136,227:136:4863:227:8007:-611.093,0,-317.52	0/1:158:67,91:67:2403:91:3230:-243.357,0,-161.401	0/1:328:96,232:96:3440:232:8201:-639.375,0,-204.517	0/1:180:54,126:54:1936:126:4494:-350.444,0,-116.516	0/1:249:62,187:62:2215:187:6645:-523.028,0,-118.768	0/1:186:68,118:68:2444:118:4188:-321.098,0,-158.98	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.05264	0/1:195:71,123:71:2548:123:4377:-335.34,0,-164.696	0/1:213:23,190:23:819:190:6677:-536.846,0,-7.76982	0/1:340:83,257:83:2968:257:9098:-716.418,0,-158.29	0/1:128:53,75:53:1904:75:2647:-199.944,0,-128.552	0/1:137:46,91:46:1648:91:3215:-248.334,0,-103.648	0/1:112:33,79:33:1180:79:2764:-215.285,0,-69.771	0/1:213:54,159:54:1940:159:5603:-440.276,0,-104.653	0/1:74:8,66:8:288:66:2313:-186.137,0,-3.36644	0/1:186:77,109:77:2756:109:3836:-289.372,0,-186.226	0/1:184:107,77:107:3823:77:2719:-189.564,0,-279.409	0/1:198:99,99:99:3517:99:3489:-254.617,0,-248.759	0/1:268:85,183:85:3030:183:6462:-500.99,0,-185.773	0/1:106:18,88:18:640:88:3086:-246.061,0,-24.8506	0/1:81:30,51:30:1072:51:1823:-139.967,0,-69.8011	0/1:193:74,119:74:2651:119:4196:-319.723,0,-173.832
chr05	18573933	.	C	T	136014	PASS	AB=0.48595;ABP=31.5063;AC=93;AF=0.5;AN=186;AO=8076;CIGAR=1X;DP=16619;DPB=16619;DPRA=0;EPP=17539.8;EPPR=18530;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.961;MQMR=59.9275;NS=93;NUMALT=1;ODDS=117.796;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288532;QR=304005;RO=8540;RPL=0;RPP=17539.8;RPPR=18530;RPR=8076;RUN=1;SAF=0;SAP=17539.8;SAR=8076;SRF=0;SRP=18547.4;SRR=8540;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:112:57,55:57:2036:55:1967:-143.585,0,-149.797	0/1:259:136,122:136:4837:122:4368:-315.265,0,-357.46	0/1:139:81,58:81:2900:58:2067:-144.457,0,-219.393	0/1:353:193,160:193:6845:160:5714:-407.095,0,-509.861	0/1:234:117,117:117:4193:117:4181:-306.021,0,-307.108	0/1:151:63,88:63:2264:88:3146:-237.91,0,-158.567	0/1:198:100,98:100:3544:98:3508:-256.197,0,-259.408	0/1:245:129,116:129:4606:116:4160:-300.829,0,-340.317	0/1:231:124,107:124:4431:107:3820:-274.457,0,-329.424	0/1:173:105,68:105:3728:68:2440:-167.777,0,-283.643	0/1:62:30,32:30:1072:32:1139:-84.1545,0,-78.1286	0/1:157:81,76:81:2883:76:2713:-197.144,0,-212.445	0/1:148:72,76:72:2584:76:2712:-199.767,0,-188.256	0/1:75:33,42:33:1163:42:1504:-113.077,0,-82.3989	0/1:137:73,64:73:2607:64:2280:-164.22,0,-193.322	0/1:98:57,41:57:2006:41:1468:-102.915,0,-151.084	0/1:110:54,56:54:1895:56:1995:-146.71,0,-137.712	0/1:104:45,59:45:1607:59:2086:-156.692,0,-113.295	0/1:49:25,24:25:900:24:856:-62.6106,0,-66.5705	0/1:331:158,173:158:5627:173:6169:-455.668,0,-406.913	0/1:288:162,126:162:5768:126:4510:-319.372,0,-432.54	0/1:276:91,185:91:3256:185:6640:-514.592,0,-210.177	0/1:232:134,98:134:4798:98:3509:-246.179,0,-362.135	0/1:285:133,152:133:4696:152:5445:-404.384,0,-336.782	0/1:187:97,90:97:3449:90:3224:-234.075,0,-253.876	0/1:682:367,315:367:13053:315:11283:-810.027,0,-969.177	0/1:347:184,163:184:6558:163:5804:-418.016,0,-485.844	0/1:74:34,40:34:1193:40:1432:-106.901,0,-85.1693	0/1:396:165,231:165:5889:231:8248:-623.123,0,-410.913	0/1:185:87,98:87:3099:98:3509:-260.327,0,-223.447	0/1:257:148,109:148:5262:109:3865:-270.681,0,-396.355	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	.:.:.:.:.:.:.:.	0/1:7:2,5:2:72:5:174:-13.894,0,-4.72951	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:393:209,184:209:7462:184:6545:-470.774,0,-552.897	0/1:399:203,196:203:7216:196:7003:-510.22,0,-529.388	0/1:104:53,51:53:1868:51:1827:-133.403,0,-137.089	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:263:146,117:146:5219:117:4184:-297.57,0,-390.667	0/1:69:44,25:44:1571:25:900:-60.5499,0,-120.91	0/1:308:148,160:148:5312:160:5700:-420.4,0,-385.495	0/1:154:85,69:85:3017:69:2472:-176.374,0,-225.402	0/1:139:90,49:90:3187:49:1751:-116.03,0,-244.895	0/1:227:135,92:135:4793:92:3304:-229.244,0,-363.164	0/1:210:105,105:105:3755:105:3767:-276.012,0,-274.616	0/1:325:149,176:149:5308:176:6283:-467.73,0,-380.02	0/1:186:97,89:97:3461:89:3189:-230.971,0,-255.71	0/1:215:95,120:95:3395:120:4279:-320.565,0,-241.043	0/1:333:193,140:193:6824:140:4985:-348.556,0,-513.992	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:155:80,75:80:2850:75:2686:-195.325,0,-209.76	0/1:87:61,26:61:2192:26:936:-58.3699,0,-171.356	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/1:199:114,85:114:4052:85:3036:-213.564,0,-304.962	0/1:117:83,34:83:2976:34:1216:-74.5261,0,-232.852	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:25:14,11:14:496:11:396:-28.457,0,-37.4485	0/1:116:54,62:54:1935:62:2228:-165.864,0,-139.506	0/1:208:93,115:93:3327:115:4118:-308.19,0,-237.033	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/1:377:164,212:164:5841:212:7564:-567.256,0,-412.254	0/1:408:200,208:200:7166:208:7423:-545.278,0,-522.174	0/1:157:76,81:76:2706:81:2892:-213.255,0,-196.522	0/1:158:75,83:75:2664:83:2965:-219.519,0,-192.442	0/1:364:183,181:183:6509:181:6451:-471.1,0,-476.323	0/1:204:123,81:123:4384:81:2900:-199.826,0,-333.323	0/1:18:11,7:11:377:7:252:-17.6104,0,-28.8394	0/1:142:67,75:67:2381:75:2677:-198.427,0,-171.8	0/1:166:85,81:85:3005:81:2887:-210.096,0,-220.287	0/1:24:16,8:16:559:8:288:-19.0427,0,-43.4129	0/1:160:115,45:115:4054:45:1568:-93.2411,0,-316.882	0/1:112:68,44:68:2444:44:1568:-107.696,0,-186.499	0/1:220:130,90:130:4626:90:3224:-224.155,0,-350.278	0/1:235:96,139:96:3414:139:4984:-377.961,0,-236.733	0/1:183:67,116:67:2358:116:4151:-318.685,0,-157.388	0/1:212:94,118:94:3340:118:4232:-317.241,0,-236.998	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:157:81,76:81:2916:76:2719:-197.689,0,-215.412	0/1:139:52,87:52:1840:87:3077:-235.305,0,-124.035	0/1:386:207,178:207:7384:178:6363:-456.505,0,-548.194	0/1:177:88,89:88:3135:89:3187:-233.77,0,-229.094	0/1:118:64,54:64:2278:54:1930:-138.453,0,-169.759	0/1:202:92,110:92:3243:110:3931:-293.173,0,-231.26	0/1:317:166,151:166:5904:151:5385:-389.357,0,-435.888	0/1:117:80,37:80:2814:37:1307:-82.7097,0,-218.192	0/1:146:73,73:73:2563:73:2608:-191.018,0,-186.966	0/1:126:66,60:66:2339:60:2148:-155.658,0,-172.84	0/1:26:14,12:14:500:12:424:-30.6696,0,-37.5094	0/1:90:47,43:47:1666:43:1544:-112.16,0,-123.133	0/1:148:84,64:84:3012:64:2287:-161.539,0,-226.758	0/1:191:87,104:87:3095:104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chr05	18573949	.	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chr05	18573969	.	G	A	23774.9	PASS	AB=0.277763;ABP=3263.33;AC=45;AF=0.241935;AN=186;AO=2124;CIGAR=1X;DP=16704;DPB=16704;DPRA=1.17076;EPP=4615.22;EPPR=31545.9;GTI=10;LEN=1;MEANALT=1.09259;MQM=59.9788;MQMR=59.9335;NS=93;NUMALT=1;ODDS=0.53585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75979;QR=521077;RO=14574;RPL=2124;RPP=4615.22;RPPR=31545.9;RPR=0;RUN=1;SAF=0;SAP=4615.22;SAR=2124;SRF=0;SRP=31650;SRR=14574;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:108:78,30:78:2787:30:1076:-64.6416,0,-218.558	0/0:257:257,0:257:9170:0:0:0,-77.3647,-825.265	0/1:137:106,31:106:3758:31:1112:-59.1502,0,-297.178	0/0:357:357,0:357:12780:0:0:0,-107.468,-1149	0/0:232:232,0:232:8273:0:0:0,-69.839,-744.574	0/0:146:146,0:146:5204:0:0:0,-43.9504,-468.499	0/1:200:156,44:156:5577:44:1576:-81.9256,0,-441.632	0/0:249:249,0:249:8886:0:0:0,-74.9565,-798.72	0/1:226:165,61:165:5877:61:2184:-128.793,0,-461.01	0/0:170:170,0:170:6084:0:0:0,-51.1751,-547.662	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:158:123,35:123:4412:35:1260:-66.0565,0,-349.689	0/1:156:121,35:121:4340:35:1260:-66.7448,0,-343.809	0/1:77:56,21:56:2012:21:752:-44.8269,0,-158.174	0/0:138:138,0:138:4964:0:0:0,-41.5421,-446.676	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:103:103,0:103:3673:0:0:0,-31.0061,-330.298	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:330:250,80:250:8933:80:2857:-158.026,0,-704.612	0/0:289:288,1:288:10267:1:36:0,-83.3994,-920.358	0/1:276:147,129:147:5243:129:4632:-333.957,0,-388.925	0/1:231:180,51:180:6432:51:1832:-95.6229,0,-509.431	0/1:290:201,89:201:7180:89:3180:-199.123,0,-558.73	0/0:186:186,0:186:6636:0:0:0,-55.9916,-596.828	0/0:685:684,1:684:24440:1:36:0,-202.607,-2195.22	0/1:350:250,100:250:8932:100:3564:-215.609,0,-698.502	0/1:71:56,15:56:2008:15:540:-27.5634,0,-159.393	0/1:405:271,134:271:9724:134:4789:-309.248,0,-753.188	0/1:186:125,60:125:4464:60:2145:-137.265,0,-345.879	0/0:258:258,0:258:9204:0:0:0,-77.6657,-828.333	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/0:394:394,0:394:14128:0:0:0,-118.606,-1270.8	0/0:403:400,3:400:14255:3:108:0,-111.24,-1272.6	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:271:207,64:207:7394:64:2274:-123.34,0,-583.918	0/1:68:53,15:53:1900:15:536:-28.1048,0,-150.808	0/1:306:216,89:216:7723:89:3184:-194.61,0,-602.93	0/1:151:119,32:119:4260:32:1152:-58.5346,0,-338.122	0/0:136:136,0:136:4827:0:0:0,-40.9401,-434.271	0/0:232:231,0:231:8261:0:0:0,-69.5379,-743.112	0/0:211:210,1:210:7509:1:36:0,-59.9191,-671.566	0/1:323:215,108:215:7693:108:3860:-250.363,0,-595.17	0/0:190:190,0:190:6820:0:0:0,-57.1957,-613.598	0/0:218:218,0:218:7788:0:0:0,-65.6245,-700.931	0/0:332:332,0:332:11901:0:0:0,-99.942,-1070.94	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/0:157:157,0:157:5632:0:0:0,-47.2617,-506.682	0/0:89:89,0:89:3173:0:0:0,-26.7917,-285.793	0/1:25:18,7:18:635:7:248:-15.1384,0,-49.9512	0/1:203:139,63:139:4943:63:2256:-142.135,0,-383.854	0/0:118:118,0:118:4225:0:0:0,-35.5215,-380.428	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:26:20,6:20:716:6:197:-10.2245,0,-56.9409	0/0:122:122,0:122:4376:0:0:0,-36.7257,-393.585	0/1:206:159,47:159:5697:47:1688:-90.1948,0,-450.833	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:378:264,114:264:9459:114:4061:-251.887,0,-737.479	0/1:410:290,120:290:10377:120:4304:-263.744,0,-810.428	0/1:156:116,40:116:4156:40:1428:-81.8569,0,-327.262	0/1:160:122,37:122:4380:37:1323:-71.1484,0,-346.148	0/0:361:359,1:359:12837:1:36:0,-105.132,-1151.51	0/1:202:137,65:137:4904:65:2321:-148.34,0,-380.704	0/0:18:17,1:17:612:1:36:0,-1.82026,-51.8152	0/1:141:98,43:98:3516:43:1544:-96.8078,0,-274.204	0/1:168:118,50:118:4227:50:1785:-110.358,0,-329.612	0/1:23:19,4:19:680:4:140:-6.02089,0,-54.6055	0/0:158:157,1:157:5585:1:36:0,-43.9645,-499.177	0/0:111:111,0:111:3955:0:0:0,-33.4143,-356.143	0/0:226:226,0:226:8096:0:0:0,-68.0328,-728.656	0/0:237:237,0:237:8460:0:0:0,-71.3441,-761.399	0/1:187:131,56:131:4633:56:1997:-123.709,0,-360.842	0/0:214:213,1:213:7609:1:36:0,-60.8221,-681.25	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:160:160,0:160:5752:0:0:0,-48.1648,-517.747	0/1:141:102,39:102:3664:39:1385:-82.5016,0,-287.509	0/0:392:389,3:389:13888:3:108:0,-107.929,-1239.46	0/0:178:178,0:178:6363:0:0:0,-53.5833,-572.761	0/1:119:93,26:93:3336:26:936:-48.7365,0,-264.634	0/0:201:201,0:201:7193:0:0:0,-60.507,-647.353	0/1:319:256,63:256:9162:63:2249:-106.643,0,-728.366	0/1:116:95,21:95:3400:21:756:-33.4477,0,-271.209	0/0:157:157,0:157:5628:0:0:0,-47.2617,-506.64	0/0:129:129,0:129:4608:0:0:0,-38.8329,-414.885	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:88:67,21:67:2400:21:752:-41.5156,0,-189.766	0/1:147:106,41:106:3787:41:1476:-88.8848,0,-296.777	0/0:195:195,0:195:6951:0:0:0,-58.7008,-625.656	0/0:219:219,0:219:7847:0:0:0,-65.9256,-706.256
chr05	18573972	.	T	C	17940.6	PASS	AB=0.24798;ABP=4236.57;AC=47;AF=0.252688;AN=186;AO=1911;CIGAR=1X;DP=16854;DPB=16854;DPRA=0.909128;EPP=4152.69;EPPR=32399.2;GTI=12;LEN=1;MEANALT=1.03846;MQM=60;MQMR=59.925;NS=93;NUMALT=1;ODDS=4.64414;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68240;QR=534626;RO=14939;RPL=1911;RPP=4152.69;RPPR=32399.2;RPR=0;RUN=1;SAF=0;SAP=4152.69;SAR=1911;SRF=0;SRP=32442.6;SRR=14939;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:108:90,18:90:3228:18:648:-26.1406,0,-258.226	0/0:260:260,0:260:9282:0:0:0,-78.2678,-835.34	0/1:141:109,32:109:3897:32:1125:-59.1108,0,-308.477	0/0:361:361,0:361:12934:0:0:0,-108.672,-1162.85	0/0:237:237,0:237:8482:0:0:0,-71.3441,-763.355	0/0:152:152,0:152:5426:0:0:0,-45.7566,-488.468	0/1:202:149,51:149:5311:51:1802:-101.892,0,-417.269	0/0:253:252,0:252:9044:0:0:0,-75.8596,-812.484	0/1:229:170,59:170:6059:59:2093:-119.702,0,-476.474	0/0:172:172,0:172:6161:0:0:0,-51.7772,-554.586	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.431	0/1:155:122,33:122:4380:33:1175:-59.3973,0,-347.626	0/1:155:122,33:122:4388:33:1184:-60.2087,0,-348.427	0/1:78:60,18:60:2148:18:648:-35.1715,0,-170.09	0/0:139:139,0:139:4996:0:0:0,-41.8432,-449.468	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.549	0/0:109:109,0:109:3893:0:0:0,-32.8123,-350.563	0/0:106:106,0:106:3812:0:0:0,-31.9092,-342.801	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/1:336:251,85:251:8990:85:3048:-173.403,0,-707.928	0/0:290:290,0:290:10363:0:0:0,-87.2987,-932.589	0/1:280:218,62:218:7817:62:2228:-116.495,0,-619.267	0/1:232:164,68:164:5857:68:2429:-149.025,0,-457.402	0/1:295:246,49:246:8772:49:1756:-69.5201,0,-700.435	0/0:187:187,0:187:6674:0:0:0,-56.2926,-600.243	0/0:694:694,0:694:24768:0:0:0,-208.915,-2228.29	0/1:353:255,98:255:9106:98:3489:-207.958,0,-713.251	0/1:74:59,15:59:2105:15:540:-26.6603,0,-167.214	0/1:404:340,64:340:12152:64:2285:-84.2938,0,-971.906	0/1:188:144,44:144:5180:44:1571:-85.0872,0,-409.742	0/0:263:263,0:263:9425:0:0:0,-79.1709,-848.207	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:13:9,4:9:315:4:144:-9.40023,0,-24.7738	0/0:394:394,0:394:14141:0:0:0,-118.606,-1271.97	0/0:410:408,2:408:14558:2:72:0,-116.586,-1303.09	0/0:106:106,0:106:3816:0:0:0,-31.9092,-343.635	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:268:177,91:177:6307:91:3242:-211.324,0,-487.044	0/1:68:49,19:49:1760:19:680:-41.0591,0,-138.214	0/1:313:222,91:222:7946:91:3241:-197.688,0,-620.937	0/1:154:112,42:112:4032:42:1499:-88.8452,0,-316.706	0/0:138:138,0:138:4925:0:0:0,-41.5421,-443.086	0/0:234:234,0:234:8320:0:0:0,-70.441,-748.777	0/0:216:216,0:216:7718:0:0:0,-65.0225,-694.123	0/1:327:243,84:243:8709:84:3016:-173.234,0,-685.361	0/0:191:191,0:191:6833:0:0:0,-57.4967,-614.769	0/0:220:220,0:220:7847:0:0:0,-66.2266,-706.248	0/0:335:335,0:335:12009:0:0:0,-100.845,-1080.65	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:154:154,0:154:5521:0:0:0,-46.3586,-496.695	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/1:25:19,6:19:684:6:212:-11.899,0,-54.3646	0/1:196:156,40:156:5570:40:1386:-66.031,0,-442.417	0/0:118:118,0:118:4202:0:0:0,-35.5215,-378.359	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:25:17,8:17:612:8:288:-18.7417,0,-47.8877	0/0:123:123,0:123:4378:0:0:0,-37.0267,-393.964	0/1:205:158,47:158:5688:47:1684:-90.1359,0,-450.323	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:384:295,89:295:10573:89:3174:-170.286,0,-835.884	0/1:422:323,99:323:11559:99:3537:-191.503,0,-912.772	0/1:156:126,30:126:4532:30:1076:-50.1922,0,-361.084	0/1:159:119,40:119:4257:40:1431:-81.2231,0,-335.443	0/0:369:367,2:367:13118:2:72:0,-104.243,-1173.55	0/1:202:131,71:131:4708:71:2540:-168.043,0,-363.07	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/1:142:116,26:116:4119:26:932:-41.4526,0,-328.146	0/1:167:126,41:126:4536:41:1472:-82.5041,0,-357.709	0/1:25:11,14:11:396:14:496:-37.4485,0,-28.457	0/0:161:161,0:161:5769:0:0:0,-48.4658,-519.322	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:228:228,0:228:8177:0:0:0,-68.6348,-735.94	0/0:238:238,0:238:8495:0:0:0,-71.6451,-764.531	0/1:187:152,35:152:5419:35:1231:-54.7995,0,-431.544	0/0:214:213,1:213:7621:1:36:0,-60.8221,-682.328	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:162:160,2:160:5699:2:72:0,-41.9301,-506.142	0/1:140:110,30:110:3945:30:1076:-55.0087,0,-313.006	0/0:392:392,0:392:14026:0:0:0,-118.004,-1261.95	0/0:180:180,0:180:6460:0:0:0,-54.1854,-581.483	0/1:118:82,36:82:2948:36:1292:-81.0622,0,-230.031	0/0:207:207,0:207:7444:0:0:0,-62.3132,-669.842	0/1:319:224,94:224:8025:94:3376:-207.968,0,-626.023	0/1:119:84,35:84:3016:35:1256:-77.5227,0,-235.762	0/0:155:155,0:155:5568:0:0:0,-46.6596,-501.241	0/0:130:130,0:130:4649:0:0:0,-39.1339,-418.571	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:89:63,26:63:2249:26:918:-56.1433,0,-175.88	0/1:148:95,53:95:3412:53:1908:-127.445,0,-262.741	0/0:197:196,1:196:6994:1:36:0,-55.7046,-625.925	0/0:221:221,0:221:7929:0:0:0,-66.5276,-713.63
chr05	18573987	.	T	A	491596	PASS	AB=0.61165;ABP=3666.83;AC=94;AF=0.5;AN=188;AO=20697;CIGAR=1X;DP=33838;DPB=33838;DPRA=0;EPP=44946;EPPR=28538.3;GTI=0;LEN=1;MEANALT=1;MQM=56.2045;MQMR=59.9779;NS=94;NUMALT=1;ODDS=40.2423;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=740187;QR=470333;RO=13141;RPL=8128;RPP=2072.24;RPPR=2712.09;RPR=12569;RUN=1;SAF=12569;SAP=2072.24;SAR=8128;SRF=4546;SRP=2712.09;SRR=8595;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:225:68,157:68:2424:157:5620:-436.061,0,-150.685	0/1:403:177,226:177:6310:226:8066:-601.712,0,-446.677	0/1:489:156,333:156:5612:333:11880:-920.056,0,-357.995	0/1:658:294,364:294:10544:364:13060:-973.07,0,-750.789	0/1:316:119,197:119:4224:197:7056:-539.56,0,-285.219	0/1:264:74,190:74:2602:190:6784:-528.889,0,-154.953	0/1:335:141,194:141:5032:194:6916:-521.002,0,-352.183	0/1:436:163,273:163:5836:273:9772:-745.224,0,-394.103	0/1:403:166,237:166:5928:237:8488:-641.973,0,-412.315	0/1:402:188,214:188:6733:214:7680:-568.421,0,-485.026	0/1:177:70,107:70:2500:107:3832:-291.161,0,-171.971	0/1:352:146,206:146:5232:206:7384:-557.452,0,-365.055	0/1:332:145,187:145:5193:187:6704:-501.844,0,-367.565	0/1:228:96,132:96:3417:132:4731:-356.776,0,-239.109	0/1:291:123,168:123:4416:168:6028:-454.075,0,-310.011	0/1:275:98,177:98:3478:177:6325:-484.65,0,-230.445	0/1:256:106,150:106:3770:150:5388:-406.342,0,-262.434	0/1:193:80,113:80:2868:113:4003:-301.018,0,-200.258	0/1:102:42,60:42:1508:60:2156:-163.389,0,-105.31	0/1:740:270,470:270:9668:470:16858:-1292.18,0,-647.253	0/1:630:298,332:298:10672:332:11865:-875.833,0,-770.669	0/1:568:120,448:120:4293:448:15934:-1260.4,0,-215.561	0/1:401:187,214:187:6689:214:7622:-563.871,0,-481.372	0/1:417:169,248:169:6048:248:8852:-670.054,0,-418.894	0/1:390:109,281:109:3916:281:10072:-784.993,0,-235.23	0/1:1206:483,723:483:17317:723:25816:-1946.95,0,-1195.11	0/1:737:239,498:239:8553:498:17783:-1375.64,0,-547.907	0/1:146:62,84:62:2228:84:3016:-227.347,0,-156.833	0/1:943:314,629:314:11245:629:22513:-1735.38,0,-728.061	0/1:419:181,238:181:6480:238:8486:-636.657,0,-457.154	0/1:424:189,235:189:6769:235:8379:-624.982,0,-481.644	0/1:24:10,14:10:360:14:500:-38.0753,0,-25.5196	0/1:65:17,48:17:608:48:1720:-134.711,0,-35.4851	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:26:4,22:4:144:22:768:-61.4145,0,-5.48684	0/1:27:11,16:11:388:16:572:-43.638,0,-27.1296	0/1:775:299,476:299:10725:476:17053:-1295.5,0,-731.835	0/1:666:234,432:234:8373:432:15430:-1184.77,0,-553.088	0/1:251:109,142:109:3900:142:5092:-381.544,0,-275.635	0/1:10:1,9:1:36:9:320:-25.8201,0,-0.587975	0/1:547:246,301:246:8828:301:10796:-805.458,0,-629.836	0/1:143:63,80:63:2268:80:2864:-214.492,0,-161.335	0/1:556:184,372:184:6561:372:13253:-1023.7,0,-423.201	0/1:242:110,132:110:3956:132:4732:-352.509,0,-283.379	0/1:267:126,141:126:4501:141:5048:-372.738,0,-324.883	0/1:453:172,281:172:6152:281:10068:-765.009,0,-417.385	0/1:454:135,319:135:4806:319:11421:-888.086,0,-296.004	0/1:594:198,396:198:7069:396:14150:-1092.79,0,-457.459	0/1:396:150,246:150:5357:246:8729:-664.24,0,-363.053	0/1:484:175,309:175:6280:309:11077:-848.709,0,-419.591	0/1:599:249,350:249:8913:350:12526:-942.088,0,-621.822	0/1:26:6,20:6:216:20:720:-57.0354,0,-11.9637	0/1:336:101,235:101:3601:235:8408:-653.333,0,-223.15	0/1:242:111,131:111:3960:131:4659:-344.598,0,-283.585	0/1:55:19,36:19:684:36:1292:-99.661,0,-45.3337	0/1:502:201,301:201:7212:301:10742:-813.521,0,-498.015	0/1:130:84,46:84:3020:46:1640:-108.673,0,-232.896	0/1:24:9,15:9:309:15:536:-41.2747,0,-20.916	0/1:67:28,39:28:996:39:1368:-102.617,0,-69.7859	0/1:321:87,234:87:3116:234:8342:-652.501,0,-184.035	0/1:444:194,250:194:6948:250:8957:-671.87,0,-491.69	0/1:14:5,9:5:180:9:320:-24.9081,0,-12.3376	0/1:676:271,405:271:9705:405:14448:-1094.19,0,-669.901	0/1:660:285,375:285:10232:375:13422:-1007.34,0,-722.123	0/1:292:127,165:127:4544:165:5904:-442.598,0,-321.226	0/1:270:95,175:95:3396:175:6250:-479.169,0,-224.577	0/1:614:267,347:267:9553:347:12400:-929.303,0,-674.892	0/1:507:224,283:224:8036:283:10152:-759.678,0,-570.635	0/1:98:33,65:33:1180:65:2332:-180.463,0,-76.0683	0/1:265:94,171:94:3372:171:6112:-469.633,0,-223.922	0/1:265:119,146:119:4269:146:5237:-389.85,0,-304.455	0/1:71:26,45:26:932:45:1616:-124.237,0,-62.8257	0/1:535:164,371:164:5864:371:13253:-1028.6,0,-366.82	0/1:307:126,181:126:4520:181:6500:-490.948,0,-314.55	0/1:484:198,286:198:7073:286:10244:-773.701,0,-490.931	0/1:543:179,364:179:6420:364:13052:-1007.94,0,-414.426	0/1:338:77,261:77:2726:261:9280:-731.987,0,-143.833	0/1:430:171,259:171:6132:259:9220:-698.424,0,-422.536	0/1:54:26,28:26:924:28:1004:-74.3478,0,-67.222	0/1:402:162,240:162:5793:240:8569:-646.395,0,-400.469	0/1:370:137,233:137:4892:233:8328:-636.909,0,-329.048	0/1:800:293,507:293:10508:507:18146:-1386.3,0,-704.808	0/1:312:133,179:133:4765:179:6394:-480.905,0,-335.083	0/1:295:131,164:131:4704:164:5880:-439.637,0,-334.714	0/1:301:116,185:116:4168:185:6644:-506.656,0,-284.691	0/1:550:243,307:243:8639:307:11012:-823.735,0,-611.939	0/1:180:99,81:99:3537:81:2916:-208.086,0,-264.351	0/1:335:124,211:124:4436:211:7557:-577.743,0,-298.565	0/1:284:114,170:114:4088:170:6096:-462.302,0,-282.61	0/1:147:47,100:47:1684:100:3596:-278.584,0,-107.596	0/1:344:118,226:118:4228:226:8093:-623.286,0,-277.144	0/1:266:131,135:131:4708:135:4852:-355.981,0,-343.804	0/1:473:207,266:207:7397:266:9516:-712.709,0,-523.389	0/1:469:192,277:192:6900:277:9918:-748.949,0,-479.88
chr05	18574041	.	A	T	130132	PASS	AB=0.641197;ABP=1976.93;AC=95;AF=0.505319;AN=188;AO=7316;CIGAR=1X;DP=11406;DPB=11406;DPRA=0;EPP=15889.5;EPPR=8862.62;GTI=1;LEN=1;MEANALT=1.06383;MQM=53.216;MQMR=59.9799;NS=94;NUMALT=1;ODDS=58.4899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=260295;QR=143886;RO=4084;RPL=7316;RPP=15889.5;RPPR=8862.62;RPR=0;RUN=1;SAF=7316;SAP=15889.5;SAR=0;SRF=4084;SRP=8871.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:10,75:10:360:75:2628:-210.356,0,-7.15675	0/1:84:38,46:38:1344:46:1648:-122.307,0,-95.9736	0/1:255:61,194:61:2156:194:6890:-541.572,0,-117.545	0/1:160:83,77:83:2917:77:2716:-194.956,0,-214.602	0/1:45:5,40:5:172:40:1421:-114.348,0,-2.27162	0/1:70:9,61:9:324:61:2170:-172.837,0,-8.43375	0/1:104:41,63:41:1443:63:2233:-169.585,0,-98.858	0/1:115:34,81:34:1193:81:2855:-221.607,0,-73.0547	0/1:105:44,61:44:1560:61:2188:-165.383,0,-109.084	0/1:162:71,91:71:2505:91:3232:-240.975,0,-176.935	0/1:73:37,36:37:1273:36:1276:-92.9019,0,-92.8931	0/1:148:61,87:61:2164:87:3098:-233.701,0,-150.475	0/1:138:63,75:63:2248:75:2655:-196.539,0,-161.041	0/1:118:61,57:61:2168:57:2032:-147.208,0,-159.866	0/1:117:50,67:50:1753:67:2400:-180.463,0,-122.831	0/1:96:34,62:34:1200:62:2212:-169.544,0,-79.4067	0/1:100:50,50:50:1738:50:1781:-129.186,0,-126.6	0/1:57:34,23:34:1195:23:828:-57.2588,0,-90.6958	0/1:32:15,17:15:511:17:582:-42.9518,0,-36.6803	0/1:287:87,200:87:3058:200:7147:-555.551,0,-189.054	0/1:237:124,113:124:4339:113:4040:-290.875,0,-319.346	0/1:214:23,191:23:781:191:6793:-545.046,0,-6.18228	0/1:118:44,74:44:1549:74:2644:-202.063,0,-104.178	0/1:71:30,41:30:1064:41:1460:-110.166,0,-74.6985	0/1:117:13,104:13:464:104:3701:-294.859,0,-6.877	0/1:307:113,194:113:3988:194:6912:-520.046,0,-266.697	0/1:270:47,223:47:1653:223:7932:-630.942,0,-67.7776	0/1:53:24,29:24:860:29:1040:-77.8666,0,-61.7672	0/1:394:126,268:126:4423:268:9567:-737.459,0,-279.642	0/1:175:77,97:77:2705:97:3437:-256.105,0,-190.956	0/1:108:38,70:38:1352:70:2496:-191.518,0,-89.4691	0/1:13:4,9:4:136:9:324:-25.5595,0,-8.66215	0/1:30:7,23:7:252:23:824:-65.2691,0,-13.9981	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:12:2,10:2:68:10:360:-28.8115,0,-2.84535	0/1:10:3,7:3:108:7:252:-19.9773,0,-7.06487	0/1:238:91,147:91:3221:147:5196:-391.987,0,-218.468	0/1:139:24,115:24:856:115:4062:-322.404,0,-35.5179	0/1:91:47,44:47:1664:44:1576:-114.222,0,-122.654	1/1:7:0,7:0:0:7:239:-21.5732,-2.10721,0	0/1:201:88,113:88:3085:113:4021:-301.176,0,-217.374	0/1:57:20,37:20:701:37:1320:-101.765,0,-46.253	0/1:170:24,146:24:840:146:5186:-414.714,0,-24.7425	0/1:63:23,40:23:808:40:1416:-108.378,0,-54.0752	0/1:80:36,44:36:1288:44:1563:-116.505,0,-92.1412	0/1:134:40,94:40:1409:94:3338:-256.399,0,-86.7672	0/1:138:26,112:26:928:112:4008:-317.511,0,-42.2961	0/1:205:48,157:48:1662:157:5572:-438.672,0,-88.1518	0/1:117:45,72:45:1604:72:2557:-193.954,0,-109.43	0/1:173:73,100:73:2592:100:3560:-266.884,0,-181.452	0/1:152:49,103:49:1752:103:3664:-280.69,0,-112.208	0/1:5:3,2:3:104:2:72:-5.32298,0,-8.19766	0/1:75:16,59:16:572:59:2083:-164.456,0,-29.2362	0/1:101:44,57:44:1537:57:2023:-150.114,0,-107.898	0/1:20:5,15:5:176:15:531:-41.9962,0,-10.1644	0/1:233:76,157:76:2676:157:5632:-436.177,0,-170.945	0/1:10:1,9:1:36:9:324:-26.4214,0,-0.587975	0/1:12:3,9:3:100:9:320:-25.444,0,-5.71808	0/1:27:12,15:12:417:15:540:-40.2082,0,-29.7324	0/1:99:26,73:26:902:73:2605:-203.981,0,-51.6884	0/1:189:90,99:90:3172:99:3501:-257.991,0,-228.799	0/1:5:2,3:2:72:3:108:-8.55313,0,-5.33157	0/1:211:92,119:92:3257:119:4248:-317.445,0,-229.835	0/1:179:74,105:74:2595:105:3722:-280.119,0,-179.917	0/1:104:45,59:45:1596:59:2112:-158.153,0,-112.623	0/1:87:20,67:20:693:67:2392:-186.515,0,-36.5	0/1:157:69,88:69:2464:88:3160:-236.182,0,-174.753	0/1:230:82,148:82:2898:148:5273:-404.416,0,-191.818	0/1:55:18,37:18:628:37:1307:-101.272,0,-39.6582	0/1:98:28,70:28:979:70:2500:-195.042,0,-58.9211	0/1:72:28,43:28:980:43:1529:-114.625,0,-66.7803	0/1:29:8,21:8:284:21:743:-58.3898,0,-17.1735	0/1:229:41,187:41:1437:187:6668:-529.318,0,-60.6295	0/1:118:52,65:52:1856:65:2315:-171.674,0,-131.74	0/1:176:59,117:59:2068:117:4163:-319.888,0,-133.408	0/1:151:75,76:75:2659:76:2723:-198.721,0,-194.101	0/1:79:10,69:10:343:69:2439:-195.479,0,-7.41919	0/1:176:72,104:72:2507:104:3688:-277.312,0,-172.899	0/1:30:13,17:13:456:17:604:-45.6105,0,-32.3423	0/1:149:60,89:60:2124:89:3121:-233.015,0,-146.573	0/1:164:69,95:69:2441:95:3362:-252.419,0,-170.576	0/1:249:77,172:77:2723:172:6155:-475.665,0,-170.358	0/1:89:41,48:41:1452:48:1716:-127.331,0,-104.184	0/1:138:64,74:64:2275:74:2628:-194.819,0,-163.47	0/1:57:24,33:24:848:33:1176:-88.7377,0,-59.4809	0/1:172:69,103:69:2446:103:3651:-276.669,0,-168.615	0/1:47:16,31:16:563:31:1108:-85.5169,0,-36.8508	0/1:102:43,58:43:1528:58:2066:-154.935,0,-107.049	0/1:105:45,60:45:1589:60:2139:-160.704,0,-111.69	0/1:80:28,52:28:1004:52:1860:-142.942,0,-66.5935	0/1:204:69,135:69:2422:135:4772:-367.02,0,-156.824	0/1:105:44,61:44:1513:61:2171:-163.313,0,-104.849	0/1:191:113,78:113:3923:78:2785:-192.566,0,-295.775	0/1:149:60,88:60:2101:88:3136:-236.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chr05	18575336	.	GTCC	ATCC	23451.8	PASS	AB=0.575874;ABP=120.318;AC=47;AF=0.252688;AN=186;AO=1366;CIGAR=1X3M;DP=4686;DPB=4686;DPRA=1.21302;EPP=2969.24;EPPR=7164.53;GTI=1;LEN=1;MEANALT=1.17308;MQM=59.7709;MQMR=59.5525;NS=93;NUMALT=1;ODDS=0.598616;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48713;QR=116361;RO=3298;RPL=0;RPP=2969.24;RPPR=7164.53;RPR=1366;RUN=1;SAF=1366;SAP=2969.24;SAR=0;SRF=3298;SRP=7164.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:8,9:8:287:9:324:-24.3801,0,-21.0582	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2042	0/1:94:48,44:48:1683:44:1566:-112.853,0,-123.641	0/0:127:126,0:126:4491:0:0:0,-37.9298,-403.986	0/0:21:21,0:21:746:0:0:0,-6.32163,-67.4648	0/0:24:22,2:22:774:2:72:0,-0.405186,-63.1606	0/1:53:15,38:15:539:38:1330:-104.041,0,-32.8916	0/0:90:86,3:86:3056:3:108:0,-17.0756,-265.153	0/1:39:15,24:15:522:24:841:-64.2662,0,-35.5678	0/0:43:43,0:43:1499:0:0:0,-12.9443,-135.198	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9317	0/1:53:22,30:22:773:30:1080:-81.5003,0,-53.8677	0/1:56:25,30:25:892:30:1076:-80.2373,0,-63.6841	0/1:36:19,17:19:679:17:608:-44.2149,0,-50.6019	0/0:30:30,0:30:1056:0:0:0,-9.0309,-95.3466	0/0:19:19,0:19:682:0:0:0,-5.71957,-61.7099	0/0:16:16,0:16:573:0:0:0,-4.81648,-51.8811	0/0:20:20,0:20:709:0:0:0,-6.0206,-64.1244	0/0:26:26,0:26:896:0:0:0,-7.82678,-80.9501	0/1:97:41,56:41:1438:56:2001:-151.159,0,-100.384	0/0:94:94,0:94:3267:0:0:0,-28.2968,-293.388	0/1:58:25,33:25:869:33:1188:-89.7656,0,-61.0659	0/1:54:23,31:23:824:31:1101:-83.1427,0,-58.2262	0/1:42:20,22:20:700:22:769:-56.8807,0,-50.5807	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5092	0/0:145:144,0:144:5042:0:0:0,-43.3483,-453.544	0/1:105:41,64:41:1434:64:2288:-174.574,0,-97.7049	0/1:19:9,10:9:322:10:360:-27.0247,0,-23.6046	0/1:173:70,103:70:2455:103:3700:-281.104,0,-169.123	0/1:63:24,39:24:843:39:1396:-106.97,0,-57.2177	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.767	0/1:4:2,2:2:70:2:68:-5.25359,0,-5.44321	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:9:9,0:9:310:0:0:0,-2.70927,-28.2324	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:82:82,0:82:2882:0:0:0,-24.6845,-259.618	0/0:115:113,0:113:4001:0:0:0,-34.0164,-359.823	0/0:31:30,1:30:1058:1:36:0,-5.7427,-91.9372	.:.:.:.:.:.:.:.	0/1:79:38,41:38:1337:41:1457:-107.636,0,-96.5596	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6908	0/1:91:41,44:41:1451:44:1557:-114.464,0,-104.941	0/1:30:11,19:11:388:19:684:-52.8594,0,-26.2238	0/0:19:19,0:19:668:0:0:0,-5.71957,-60.4436	0/0:29:29,0:29:1039:0:0:0,-8.72987,-93.8181	0/0:52:51,0:51:1801:0:0:0,-15.3525,-162.012	0/1:109:49,60:49:1749:60:2137:-159.733,0,-124.875	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.588	0/0:93:93,0:93:3253:0:0:0,-27.9958,-292.752	0/0:43:43,0:43:1511:0:0:0,-12.9443,-136.267	0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1504	0/0:84:83,0:83:2937:0:0:0,-24.9855,-264.126	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.911	0/1:14:9,5:9:309:5:176:-11.9706,0,-23.9255	0/1:96:43,53:43:1513:53:1896:-142.019,0,-107.313	0/0:15:15,0:15:523:0:0:0,-4.51545,-47.3964	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:3,4:3:105:4:144:-11.2064,0,-7.68661	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.892	0/1:72:34,38:34:1216:38:1356:-100.638,0,-88.0704	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:96:27,69:27:953:69:2433:-190.323,0,-57.1838	0/1:104:41,63:41:1454:63:2256:-171.993,0,-99.8058	0/1:31:10,21:10:354:21:741:-57.6051,0,-22.7287	0/1:74:38,36:38:1333:36:1284:-93.5848,0,-97.9709	0/0:72:70,1:70:2457:1:36:0,-18.0598,-217.831	0/1:108:34,74:34:1211:74:2660:-207.129,0,-76.7674	0/1:16:11,5:11:395:5:180:-11.7356,0,-31.0757	0/1:50:12,38:12:423:38:1364:-108.006,0,-23.3408	0/1:32:9,23:9:324:23:816:-64.1269,0,-19.8729	0/1:8:1,7:1:32:7:233:-18.8861,0,-0.791073	0/0:84:82,1:82:2916:1:36:0,-21.7552,-259.037	0/0:40:40,0:40:1393:0:0:0,-12.0412,-125.627	0/0:48:48,0:48:1674:0:0:0,-14.4494,-150.939	0/0:56:56,0:56:1975:0:0:0,-16.8577,-178.016	0/1:60:20,40:20:716:40:1421:-110.106,0,-46.7063	0/0:83:82,1:82:2879:1:36:0,-21.3872,-255.718	0/1:16:10,6:10:350:6:186:-12.2271,0,-27.011	0/0:64:64,0:64:2255:0:0:0,-19.2659,-203.208	0/1:51:25,26:25:864:26:936:-69.1906,0,-62.7131	0/0:108:104,4:104:3676:4:144:0,-19.1976,-317.702	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.258	0/1:34:19,15:19:683:15:540:-38.6877,0,-51.5651	0/0:17:17,0:17:610:0:0:0,-5.11751,-55.2282	0/1:63:30,33:30:1058:33:1184:-87.8987,0,-76.5547	0/1:21:6,15:6:210:15:536:-42.2532,0,-12.9118	0/0:30:29,0:29:1004:0:0:0,-8.72987,-90.3452	0/0:41:40,0:40:1425:0:0:0,-12.0412,-128.189	0/0:34:34,0:34:1214:0:0:0,-10.235,-109.517	0/1:64:36,27:36:1279:27:968:-68.1132,0,-96.0677	0/1:26:6,20:6:212:20:720:-57.2996,0,-11.5982	0/0:79:79,0:79:2767:0:0:0,-23.7814,-249.267	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.65
chr05	18575351	.	TTC	GTT,TTT	99584.7	PASS	AB=0.417834,0.579618;ABP=141.108,132.676;AC=139,47;AF=0.747312,0.252688;AN=186;AO=3313,1376;CIGAR=1X1M1X,2M1X;DP=4699;DPB=4699;DPRA=51.6154,1.22346;EPP=7127.78,2982.28;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.61538,2.08163;MQM=59.5225,59.7464;MQMR=60;NS=93;NUMALT=2;ODDS=0.419038;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=116727,49225;QR=36;RO=1;RPL=8,1;RPP=7127.78,2982.28;RPPR=5.18177;RPR=3305,1375;RUN=1,1;SAF=3313,1376;SAP=7197.1,2990.96;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:17:0,8,9:0:0:8,9:288,320:-49.9254,-26.4248,-24.0166,-23.8582,0,-21.149	1/1:18:0,18,0:0:0:18,0:646,0:-58.4662,-5.41854,0,-58.4662,-5.41854,-58.4662	1/2:96:0,48,48:0:0:48,48:1692,1710:-277.173,-139.506,-125.057,-138.02,0,-123.571	1/1:128:0,128,0:0:0:128,0:4563,0:-410.809,-38.5318,0,-410.809,-38.5318,-410.809	1/1:21:0,21,0:0:0:21,0:744,0:-67.2835,-6.32163,0,-67.2835,-6.32163,-67.2835	1/1:24:0,23,0:0:0:23,0:826,0:-74.4026,-6.92369,0,-74.4026,-6.92369,-74.4026	1/2:55:0,15,40:0:0:15,40:538,1436:-161.378,-117.496,-112.981,-44.2403,0,-32.1991	1/1:90:0,87,3:0:0:87,3:3047,108:-274.062,-26.1896,0,-265.249,-17.0175,-264.346	1/2:39:0,15,24:0:0:15,24:536,860:-114.199,-70.4971,-65.9817,-44.0596,0,-36.8349	1/1:43:0,43,0:0:0:43,0:1519,0:-136.999,-12.9443,0,-136.999,-12.9443,-136.999	1/1:18:0,18,0:0:0:18,0:629,0:-56.9322,-5.41854,0,-56.9322,-5.41854,-56.9322	1/2:53:0,22,31:0:0:22,31:755,1116:-152.692,-91.4112,-84.7885,-61.6311,0,-52.2992	1/2:56:0,26,30:0:0:26,30:932,1080:-164.487,-88.4823,-80.6556,-76.3641,0,-67.3332	1/2:36:1,19,16:1:36:19,16:680,563:-98.0398,-42.8854,-40.1038,-52.5126,0,-50.6336	1/1:30:0,30,0:0:0:30,0:1047,0:-94.5236,-9.0309,0,-94.5236,-9.0309,-94.5236	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:16:0,16,0:0:0:16,0:576,0:-52.1504,-4.81648,0,-52.1504,-4.81648,-52.1504	1/1:20:0,19,0:0:0:19,0:672,0:-60.4445,-5.71957,0,-60.4445,-5.71957,-60.4445	1/1:27:0,27,0:0:0:27,0:949,0:-85.7074,-8.12781,0,-85.7074,-8.12781,-85.7074	1/2:98:0,41,57:0:0:41,57:1450,2044:-285.08,-167.07,-154.728,-118.365,0,-101.206	1/1:95:0,95,0:0:0:95,0:3313,0:-297.948,-28.5979,0,-297.948,-28.5979,-297.948	1/2:59:0,25,34:0:0:25,34:845,1224:-168.713,-100.23,-92.7039,-68.8308,0,-58.5958	1/2:54:0,23,31:0:0:23,31:813,1112:-157.269,-91.0594,-84.1357,-66.5648,0,-57.2329	1/2:42:0,20,22:0:0:20,22:689,792:-120.883,-64.9784,-58.9578,-56.2566,0,-49.6339	1/1:24:0,24,0:0:0:24,0:839,0:-75.8268,-7.22472,0,-75.8268,-7.22472,-75.8268	1/1:146:0,146,0:0:0:146,0:5099,0:-459.038,-43.9504,0,-459.038,-43.9504,-459.038	1/2:105:0,41,64:0:0:41,64:1446,2283:-304.162,-186.465,-174.123,-118.05,0,-98.7845	1/2:21:0,10,11:0:0:10,11:352,396:-61.3231,-32.6714,-29.6611,-29.0073,0,-25.696	1/2:175:0,69,105:0:0:69,105:2435,3768:-505.606,-307.331,-286.56,-198.27,0,-166.662	1/2:63:0,24,39:0:0:24,39:824,1400:-181.447,-114.554,-107.33,-67.2421,0,-55.5019	1/1:60:0,60,0:0:0:60,0:2117,0:-190.778,-18.0618,0,-190.778,-18.0618,-190.778	1/2:4:0,2,2:0:0:2,2:64,72:-11.3708,-6.23466,-5.6326,-5.47604,0,-4.87398	1/1:11:0,11,0:0:0:11,0:391,0:-35.5296,-3.31133,0,-35.5296,-3.31133,-35.5296	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:9:0,9,0:0:0:9,0:320,0:-29.1426,-2.70927,0,-29.1426,-2.70927,-29.1426	1/2:6:0,2,4:0:0:2,4:72,144:-17.9843,-12.1095,-11.5074,-6.23466,0,-5.03054	1/1:83:0,83,0:0:0:83,0:2896,0:-260.873,-24.9855,0,-260.873,-24.9855,-260.873	1/1:115:0,115,0:0:0:115,0:4061,0:-365.579,-34.6185,0,-365.579,-34.6185,-365.579	1/1:30:0,30,0:0:0:30,0:1064,0:-96.059,-9.0309,0,-96.059,-9.0309,-96.059	.:.:.:.:.:.:.:.	1/2:77:0,38,39:0:0:38,39:1341,1390:-222.551,-113.657,-102.218,-109.247,0,-97.5072	1/2:25:0,12,13:0:0:12,13:432,453:-72.4362,-37.1862,-33.5739,-35.6042,0,-31.6908	1/2:91:0,41,49:0:0:41,49:1454,1756:-261.643,-143.185,-130.843,-118.455,0,-103.704	1/2:30:0,11,19:0:0:11,19:381,676:-86.4072,-55.4484,-52.1371,-31.3084,0,-25.5888	1/1:19:0,19,0:0:0:19,0:670,0:-60.6245,-5.71957,0,-60.6245,-5.71957,-60.6245	1/1:30:0,30,0:0:0:30,0:1064,0:-96.0654,-9.0309,0,-96.0654,-9.0309,-96.0654	1/1:52:0,52,0:0:0:52,0:1821,0:-164.165,-15.6536,0,-164.165,-15.6536,-164.165	1/2:110:0,50,60:0:0:50,60:1757,2152:-318.833,-175.834,-160.783,-143.353,0,-125.291	1/1:41:0,40,0:0:0:40,0:1425,0:-128.177,-12.0412,0,-128.177,-12.0412,-128.177	1/1:93:0,93,0:0:0:93,0:3259,0:-293.471,-27.9958,0,-293.471,-27.9958,-293.471	1/1:43:0,43,0:0:0:43,0:1522,0:-137.252,-12.9443,0,-137.252,-12.9443,-137.252	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:85:0,85,0:0:0:85,0:2948,0:-265.376,-25.5876,0,-265.376,-25.5876,-265.376	1/1:51:0,51,0:0:0:51,0:1826,0:-164.62,-15.3525,0,-164.62,-15.3525,-164.62	1/2:14:0,9,5:0:0:9,5:320,180:-41.1185,-15.0469,-12.3376,-26.4298,0,-24.9246	1/2:98:0,44,54:0:0:44,54:1528,1924:-281.131,-157.181,-143.936,-124.301,0,-108.045	1/1:15:0,15,0:0:0:15,0:512,0:-46.4001,-4.51545,0,-46.4001,-4.51545,-46.4001	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:7:0,3,4:0:0:3,4:99,144:-20.0991,-12.1095,-11.2064,-8.33224,0,-7.12812	1/1:51:0,51,0:0:0:51,0:1825,0:-164.51,-15.3525,0,-164.51,-15.3525,-164.51	1/2:74:0,34,40:0:0:34,40:1191,1428:-213.651,-116.748,-106.513,-97.2564,0,-85.2152	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:95:0,27,68:0:0:27,68:954,2444:-277.433,-199.743,-191.615,-78.0447,0,-57.5747	1/2:104:0,41,63:0:0:41,63:1439,2251:-300.958,-183.885,-171.543,-117.426,0,-98.461	1/2:30:0,9,20:0:0:9,20:317,714:-84.0798,-58.2788,-55.5695,-25.9285,0,-19.9079	1/2:74:0,38,36:0:0:38,36:1331,1288:-213.656,-105.384,-93.945,-108.625,0,-97.7882	1/1:72:0,70,1:0:0:70,1:2435,36:-219.046,-21.0721,0,-216.108,-18.1097,-215.807	1/2:106:0,33,72:0:0:33,72:1180,2592:-307.687,-211.489,-201.555,-96.1961,0,-74.522	1/2:16:0,11,5:0:0:11,5:396,180:-47.3585,-15.0469,-11.7356,-32.6714,0,-31.1663	1/2:51:0,12,39:0:0:12,39:430,1376:-147.448,-112.394,-108.781,-35.4113,0,-23.6711	1/2:32:0,9,23:0:0:9,23:322,828:-94.1753,-67.9186,-65.2093,-26.6149,0,-19.6913	1/2:8:0,1,7:0:0:1,7:36,248:-23.4951,-20.557,-20.256,-3.29724,0,-1.19003	1/1:84:0,84,0:0:0:84,0:2988,0:-269.069,-25.2865,0,-269.069,-25.2865,-269.069	1/1:40:0,40,0:0:0:40,0:1382,0:-124.642,-12.0412,0,-124.642,-12.0412,-124.642	1/1:48:0,48,0:0:0:48,0:1693,0:-152.644,-14.4494,0,-152.644,-14.4494,-152.644	1/1:56:0,56,0:0:0:56,0:2001,0:-180.357,-16.8577,0,-180.357,-16.8577,-180.357	1/2:60:0,20,40:0:0:20,40:708,1436:-175.145,-117.476,-111.455,-58.0246,0,-45.9834	1/1:83:0,82,1:0:0:82,1:2905,36:-261.284,-24.6845,0,-258.347,-21.3872,-258.046	1/2:16:0,10,6:0:0:10,6:351,197:-44.8209,-16.2451,-13.2348,-28.9125,0,-27.1063	1/1:64:0,64,0:0:0:64,0:2285,0:-205.909,-19.2659,0,-205.909,-19.2659,-205.909	1/2:51:0,25,25:0:0:25,25:860,896:-142.943,-73.1149,-65.5891,-69.8668,0,-62.3411	1/1:108:0,104,4:0:0:104,4:3705,144:-333.259,-31.3071,0,-321.509,-19.1976,-320.305	1/1:35:0,35,0:0:0:35,0:1228,0:-110.814,-10.5361,0,-110.814,-10.5361,-110.814	1/2:34:0,19,15:0:0:19,15:670,532:-98.2477,-43.6948,-37.9753,-54.9064,0,-50.391	1/1:17:0,17,0:0:0:17,0:599,0:-54.2336,-5.11751,0,-54.2336,-5.11751,-54.2336	1/2:62:0,29,33:0:0:29,33:1038,1180:-181.199,-96.5694,-87.8395,-84.987,0,-75.053	1/2:21:0,6,15:0:0:6,15:208,531:-60.502,-43.6065,-41.8003,-17.244,0,-12.7286	1/1:30:0,30,0:0:0:30,0:1052,0:-94.9836,-9.0309,0,-94.9836,-9.0309,-94.9836	1/1:41:0,41,0:0:0:41,0:1436,0:-129.524,-12.3422,0,-129.524,-12.3422,-129.524	1/1:34:0,34,0:0:0:34,0:1182,0:-106.631,-10.235,0,-106.631,-10.235,-106.631	1/2:64:0,36,28:0:0:36,28:1286,1008:-187.431,-82.6042,-71.7671,-105.186,0,-96.7568	1/2:26:0,6,20:0:0:6,20:216,705:-75.3783,-57.7521,-55.9459,-17.9843,0,-11.9637	1/1:79:0,79,0:0:0:79,0:2760,0:-248.632,-23.7814,0,-248.632,-23.7814,-248.632	1/1:36:0,36,0:0:0:36,0:1258,0:-113.516,-10.8371,0,-113.516,-10.8371,-113.516
chr05	18575457	.	T	C	42481	PASS	AB=0.597651;ABP=651.874;AC=95;AF=0.505319;AN=188;AO=4724;CIGAR=1X;DP=7886;DPB=7886;DPRA=24.4689;EPP=10261;EPPR=6862.69;GTI=7;LEN=1;MEANALT=1.03261;MQM=26.6732;MQMR=59.9607;NS=94;NUMALT=1;ODDS=0.541426;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167891;QR=113167;RO=3159;RPL=0;RPP=10261;RPPR=6862.69;RPR=4724;RUN=1;SAF=0;SAP=10261;SAR=4724;SRF=0;SRP=6862.69;SRR=3159;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:19,13:19:684:13:464:-20.3691,0,-51.9963	0/1:140:74,66:74:2664:66:2343:-109.353,0,-197.861	0/1:159:48,111:48:1724:111:3937:-206.692,0,-107.582	0/1:147:51,96:51:1828:96:3440:-183.56,0,-120.55	1/1:42:3,39:3:108:39:1392:-84.9239,-2.56809,0	0/1:23:9,14:9:324:14:491:-25.3288,0,-22.5822	0/1:108:39,69:39:1396:69:2457:-134.594,0,-93.4279	0/1:86:34,52:34:1220:52:1837:-93.5448,0,-84.2182	0/1:117:56,61:56:2008:61:2188:-104.389,0,-145.773	0/1:130:45,85:45:1616:85:3026:-163.623,0,-106.596	0/1:61:17,44:17:612:44:1550:-82.2406,0,-37.0506	0/1:68:39,29:39:1388:29:1040:-47.5166,0,-104.749	0/1:68:41,27:41:1468:27:968:-41.912,0,-111.946	0/1:81:30,51:30:1063:51:1815:-85.2262,0,-71.5634	0/1:79:37,42:37:1323:42:1482:-72.6173,0,-95.5899	0/1:62:24,38:24:860:38:1347:-64.983,0,-59.058	0/1:71:25,46:25:896:46:1644:-85.5551,0,-59.5872	0/1:45:32,13:32:1152:13:464:-17.4942,0,-90.4438	0/1:33:15,18:15:540:18:644:-31.7224,0,-39.0025	0/1:167:71,95:71:2535:95:3395:-175.396,0,-178.173	0/1:121:45,76:45:1595:76:2691:-137.878,0,-107.415	0/1:110:42,68:42:1486:68:2423:-132.334,0,-100.92	0/1:86:51,35:51:1811:35:1237:-58.3368,0,-137.381	0/1:130:60,70:60:2139:70:2500:-121.902,0,-153.643	0/1:53:10,43:10:360:43:1509:-82.5903,0,-16.7897	0/1:276:110,166:110:3944:166:5913:-323.503,0,-272.067	0/1:156:46,110:46:1656:110:3905:-203.194,0,-102.368	0/1:41:18,23:18:648:23:803:-39.3762,0,-46.305	0/1:221:72,149:72:2584:149:5332:-293.593,0,-166.281	0/1:154:70,84:70:2497:84:2988:-151.147,0,-178.623	0/1:100:36,64:36:1287:64:2296:-126.315,0,-86.0298	0/1:3:1,2:1:36:2:72:-3.78403,0,-2.69518	0/1:12:2,10:2:72:10:347:-20.0699,0,-3.22436	0/1:7:1,6:1:36:6:216:-11.9657,0,-1.49106	0/1:5:2,3:2:72:3:104:-5.20036,0,-5.33157	0/1:6:3,3:3:108:3:108:-5.3582,0,-8.26899	0/1:199:77,122:77:2751:122:4336:-220.168,0,-187.927	0/1:211:96,115:96:3436:115:4086:-206.202,0,-245.761	0/1:59:33,26:33:1184:26:915:-42.7043,0,-89.1075	1/1:2:0,2:0:0:2:72:-4.68712,-0.60206,0	0/1:124:44,80:44:1576:80:2859:-146.325,0,-104.804	0/1:34:18,16:18:648:16:572:-27.5271,0,-48.4169	0/1:152:82,70:82:2944:70:2508:-117.972,0,-219.392	0/1:84:45,39:45:1620:39:1366:-63.2424,0,-120.803	0/1:63:21,42:21:752:42:1474:-76.6018,0,-49.0414	0/1:52:20,32:20:720:32:1131:-59.6515,0,-49.4752	0/1:54:10,44:10:360:44:1572:-88.7261,0,-16.4887	0/1:62:24,38:24:864:38:1347:-75.0988,0,-59.4187	0/1:81:15,66:15:536:66:2336:-137.287,0,-24.1914	0/1:106:44,62:44:1580:62:2216:-114.179,0,-110.581	0/1:148:45,103:45:1608:103:3671:-209,0,-100.458	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:106:29,77:29:1044:77:2757:-145.07,0,-62.3656	0/1:22:8,14:8:284:14:504:-30.8948,0,-19.2807	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:103:37,66:37:1328:66:2359:-120.983,0,-88.8161	0/1:35:15,20:15:540:20:712:-38.3412,0,-38.4005	1/1:1:0,1:0:0:1:36:-2.55871,-0.30103,0	0/1:10:4,6:4:144:6:212:-11.9205,0,-10.3033	0/1:48:15,33:15:540:33:1176:-60.0601,0,-34.4871	0/1:172:68,104:68:2435:104:3723:-181.605,0,-167.627	0/1:2:1,1:1:36:1:32:-1.90084,0,-2.99621	0/1:151:57,94:57:2048:94:3331:-185.143,0,-139.136	0/1:164:92,72:92:3304:72:2576:-125.822,0,-248.181	0/1:47:31,16:31:1112:16:546:-22.5769,0,-86.2429	0/1:59:25,34:25:900:34:1209:-64.2194,0,-63.5602	0/1:126:51,75:51:1828:75:2661:-141.372,0,-126.871	0/1:90:38,52:38:1360:52:1864:-98.2117,0,-95.6079	0/1:19:6,13:6:216:13:455:-21.9177,0,-14.0709	0/1:92:44,48:44:1584:48:1694:-82.3461,0,-115.157	0/1:110:40,70:40:1436:70:2475:-129.867,0,-96.2342	0/1:19:11,8:11:396:8:288:-14.7589,0,-30.2632	0/1:86:22,64:22:788:64:2270:-120.998,0,-45.3562	0/1:36:14,22:14:504:22:761:-39.3571,0,-34.861	0/1:147:48,99:48:1720:99:3495:-180.351,0,-110.834	0/1:91:44,46:44:1584:46:1636:-84.7188,0,-115.467	0/1:72:13,59:13:468:59:2093:-114.49,0,-20.7855	0/1:56:30,26:30:1080:26:928:-43.0037,0,-80.6556	0/1:6:4,2:4:144:2:72:-3.05536,0,-11.5074	0/1:80:34,46:34:1212:46:1640:-81.1689,0,-85.3039	0/1:91:35,56:35:1248:56:1985:-100.765,0,-85.2311	0/1:140:28,112:28:1004:112:3987:-225.822,0,-48.5317	0/1:144:60,84:60:2156:84:2973:-149.044,0,-150.959	0/1:76:29,47:29:1036:47:1667:-82.8507,0,-70.6756	0/1:83:28,55:28:1008:55:1910:-98.3551,0,-66.0509	0/1:154:73,81:73:2624:81:2860:-133.691,0,-190.048	0/1:54:32,22:32:1152:22:780:-36.3018,0,-87.7345	0/1:65:40,25:40:1422:25:887:-38.0176,0,-108.709	0/1:58:32,26:32:1148:26:923:-43.3591,0,-86.1701	0/1:46:12,34:12:432:34:1203:-59.3341,0,-25.3738	0/1:116:55,61:55:1972:61:2188:-93.6163,0,-142.835	0/1:84:41,43:41:1467:43:1519:-70.4913,0,-107.039	0/1:96:20,76:20:690:76:2667:-153.045,0,-33.5179	0/1:90:34,56:34:1206:56:2008:-98.1806,0,-81.7518
chr05	18575464	.	A	G	42450.6	PASS	AB=0.600176;ABP=696.06;AC=94;AF=0.5;AN=188;AO=4775;CIGAR=1X;DP=7961;DPB=7961;DPRA=24.7019;EPP=10371.8;EPPR=6912.64;GTI=8;LEN=1;MEANALT=1.04348;MQM=26.4366;MQMR=59.8096;NS=94;NUMALT=1;ODDS=0.327085;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169836;QR=113630;RO=3182;RPL=0;RPP=10371.8;RPPR=6912.64;RPR=4775;RUN=1;SAF=0;SAP=10371.8;SAR=4775;SRF=0;SRP=6912.64;SRR=3182;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:18,16:18:648:16:564:-27.1987,0,-48.4169	0/1:138:71,67:71:2508:67:2376:-111.889,0,-184.432	0/1:164:49,115:49:1760:115:4094:-214.56,0,-109.315	0/1:154:52,102:52:1857:102:3643:-195.444,0,-121.049	0/1:41:9,32:9:324:32:1152:-61.2231,0,-17.095	0/1:24:10,14:10:360:14:504:-25.2709,0,-25.5196	0/1:108:40,68:40:1436:68:2436:-132.841,0,-97.0264	0/1:87:35,52:35:1260:52:1840:-92.2413,0,-87.5077	0/1:119:57,62:57:2024:62:2195:-105.353,0,-146.61	0/1:132:45,87:45:1590:87:3091:-166.311,0,-103.623	0/1:58:16,42:16:567:42:1480:-77.4641,0,-33.8872	0/1:68:40,28:40:1432:28:996:-44.1819,0,-108.699	0/1:70:40,30:40:1428:30:1071:-48.849,0,-107.745	0/1:81:29,52:29:1035:52:1851:-87.4659,0,-69.075	0/1:77:38,39:38:1343:39:1385:-65.4081,0,-97.9763	0/1:62:26,36:26:936:36:1279:-58.7745,0,-65.8864	0/1:71:26,45:26:904:45:1597:-81.8376,0,-60.2538	0/1:45:33,12:33:1184:12:428:-14.2929,0,-93.277	0/1:34:16,18:16:576:18:640:-31.3708,0,-41.94	0/1:166:71,94:71:2535:94:3368:-174.043,0,-178.501	0/1:121:44,77:44:1572:77:2718:-139.532,0,-105.347	0/1:110:41,69:41:1476:69:2455:-135.26,0,-100.023	0/1:89:52,37:52:1852:37:1304:-62.6685,0,-140.167	0/1:129:58,71:58:2075:71:2548:-125.014,0,-148.187	0/1:53:11,42:11:396:42:1490:-80.1461,0,-20.0235	0/1:281:105,176:105:3744:176:6261:-348.246,0,-252.57	0/1:157:46,111:46:1633:111:3960:-205.71,0,-99.9951	0/1:43:20,22:20:720:22:784:-33.6985,0,-52.2069	0/1:219:70,149:70:2508:149:5296:-292.902,0,-160.047	0/1:158:74,84:74:2632:84:2995:-147.91,0,-189.545	0/1:102:37,65:37:1328:65:2293:-125.473,0,-89.1034	0/1:3:1,2:1:36:2:68:-3.74063,0,-2.69518	0/1:12:2,10:2:57:10:356:-20.2653,0,-1.80095	0/1:7:1,6:1:36:6:216:-11.9657,0,-1.49106	0/1:4:1,3:1:36:3:104:-5.46752,0,-2.39415	0/1:6:3,3:3:108:3:108:-5.3582,0,-8.26899	0/1:202:74,128:74:2634:128:4570:-234.006,0,-176.498	0/1:212:97,115:97:3467:115:4044:-202.745,0,-248.28	0/1:61:34,27:34:1220:27:955:-44.4868,0,-91.7358	1/1:2:0,2:0:0:2:72:-4.68712,-0.60206,0	0/1:128:46,82:46:1633:82:2915:-149.817,0,-108.725	0/1:35:21,14:21:752:14:500:-19.4652,0,-57.4564	0/1:150:79,71:79:2832:71:2522:-119.978,0,-209.964	0/1:85:45,40:45:1607:40:1424:-64.6901,0,-119.318	0/1:64:20,44:20:711:44:1552:-79.8147,0,-45.0359	0/1:51:20,31:20:716:31:1112:-58.4801,0,-49.4152	0/1:54:14,40:14:504:40:1414:-75.5196,0,-29.4096	0/1:62:22,40:22:792:40:1419:-79.6509,0,-52.9418	0/1:81:18,63:18:648:63:2232:-126.962,0,-34.2271	0/1:107:45,62:45:1616:62:2198:-112.348,0,-113.517	0/1:147:43,104:43:1548:104:3715:-211.611,0,-95.3617	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:106:30,76:30:1072:76:2716:-142.626,0,-64.8833	0/1:22:11,11:11:388:11:396:-21.2182,0,-28.5954	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:102:37,65:37:1332:65:2315:-118.122,0,-89.4727	0/1:34:14,20:14:504:20:716:-38.7463,0,-35.4631	1/1:1:0,1:0:0:1:36:-2.55871,-0.30103,0	0/1:10:4,6:4:125:6:216:-11.9716,0,-8.54832	0/1:48:16,32:16:572:32:1148:-57.9225,0,-37.364	0/1:175:68,107:68:2439:107:3801:-185.641,0,-167.07	0/1:2:1,1:1:36:1:36:-1.95665,0,-2.99621	0/1:148:55,93:55:1968:93:3302:-183.92,0,-132.843	0/1:166:92,74:92:3268:74:2635:-128.876,0,-244.279	0/1:47:30,17:30:1056:17:612:-26.4838,0,-81.2025	0/1:59:25,33:25:896:33:1166:-61.9552,0,-63.2077	0/1:130:52,78:52:1868:78:2781:-148.532,0,-129.265	0/1:90:36,54:36:1283:54:1921:-102.66,0,-88.6799	0/1:19:6,13:6:207:13:455:-22.0827,0,-13.2473	0/1:96:45,51:45:1616:51:1827:-88.3328,0,-116.831	0/1:114:44,70:44:1543:70:2507:-127.733,0,-104.805	0/1:19:11,8:11:392:8:288:-14.7589,0,-29.9005	0/1:88:24,64:24:856:64:2261:-119.813,0,-50.8705	0/1:37:14,23:14:504:23:828:-41.9155,0,-34.56	0/1:146:46,100:46:1652:100:3562:-183.602,0,-105.018	0/1:92:44,48:44:1576:48:1704:-89.5279,0,-114.437	0/1:72:14,58:14:495:58:2056:-111.167,0,-23.2007	0/1:58:29,29:29:1036:29:1021:-48.7058,0,-76.0942	0/1:6:4,2:4:144:2:72:-3.05536,0,-11.5074	0/1:79:32,47:32:1148:47:1679:-83.6615,0,-79.8485	0/1:90:35,55:35:1256:55:1951:-99.0709,0,-86.2526	0/1:143:26,117:26:927:117:4165:-235.43,0,-40.7001	0/1:145:62,82:62:2211:82:2936:-142.043,0,-155.607	0/1:75:29,46:29:1040:46:1626:-80.085,0,-71.3234	0/1:86:30,56:30:1049:56:1972:-99.353,0,-68.6391	0/1:159:72,87:72:2588:87:3079:-145.273,0,-185.305	0/1:54:34,20:34:1220:20:720:-30.057,0,-93.7613	0/1:67:41,26:41:1472:26:928:-39.8597,0,-112.604	0/1:60:32,28:32:1152:28:1000:-46.5726,0,-85.9202	0/1:46:12,34:12:432:34:1209:-59.1189,0,-25.3738	0/1:119:54,65:54:1923:65:2305:-100.867,0,-137.524	0/1:84:41,43:41:1468:43:1531:-70.6821,0,-107.13	0/1:103:26,77:26:932:77:2739:-153.167,0,-53.1928	0/1:89:32,57:32:1136:57:2028:-101.738,0,-75.7572
chr05	18575512	.	T	G	44016.5	PASS	AB=0.603199;ABP=737.587;AC=95;AF=0.505319;AN=188;AO=4832;CIGAR=1X;DP=7991;DPB=7991;DPRA=28.9312;EPP=10495.6;EPPR=6860.52;GTI=8;LEN=1;MEANALT=1.01087;MQM=26.7241;MQMR=59.9471;NS=94;NUMALT=1;ODDS=0.461172;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173037;QR=112839;RO=3158;RPL=4832;RPP=10495.6;RPPR=6860.52;RPR=0;RUN=1;SAF=0;SAP=10495.6;SAR=4832;SRF=0;SRP=6860.52;SRR=3158;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:19,16:19:672:16:564:-26.8743,0,-50.2708	0/1:141:73,68:73:2586:68:2436:-114,0,-190.541	0/1:163:49,114:49:1740:114:4092:-213.394,0,-107.817	0/1:154:52,102:52:1868:102:3664:-195.99,0,-122.041	1/1:41:2,39:2:72:39:1400:-88.254,-5.50551,0	0/1:24:10,14:10:356:14:504:-25.2709,0,-25.1565	0/1:107:38,69:38:1364:69:2453:-134.528,0,-90.8505	0/1:84:34,50:34:1224:50:1800:-90.4478,0,-85.1805	0/1:118:56,62:56:1996:62:2216:-106.323,0,-144.392	0/1:132:45,87:45:1593:87:3128:-168.213,0,-103.922	0/1:60:17,43:17:608:43:1536:-80.9281,0,-36.9902	0/1:66:39,27:39:1396:27:972:-43.2429,0,-106.071	0/1:68:40,28:40:1432:28:1008:-44.0979,0,-108.708	0/1:82:30,52:30:1072:52:1868:-87.3892,0,-72.0364	0/1:75:36,39:36:1284:39:1392:-66.7584,0,-93.2862	0/1:64:24,40:24:864:40:1419:-68.8124,0,-58.8166	0/1:72:25,47:25:896:47:1692:-87.5409,0,-59.2862	0/1:45:32,13:32:1136:13:455:-16.7178,0,-89.0025	0/1:34:16,18:16:576:18:648:-31.4719,0,-41.94	0/1:169:73,96:73:2567:96:3422:-176.622,0,-180.402	0/1:123:45,78:45:1593:78:2796:-142.138,0,-106.632	0/1:109:42,67:42:1504:67:2408:-131.217,0,-102.842	0/1:90:51,39:51:1828:39:1384:-67.2969,0,-137.706	0/1:130:58,72:58:2057:72:2572:-126.916,0,-146.266	0/1:53:9,44:9:324:44:1580:-85.8683,0,-13.5513	0/1:284:109,175:109:3912:175:6284:-345.482,0,-266.78	0/1:157:46,111:46:1644:111:3976:-206.174,0,-100.987	0/1:41:18,23:18:644:23:828:-39.1546,0,-45.9437	0/1:224:72,152:72:2564:152:5436:-300.805,0,-163.58	0/1:154:71,83:71:2540:83:2976:-150.818,0,-182.492	0/1:103:35,67:35:1256:67:2396:-133.711,0,-82.3386	0/1:3:1,2:1:36:2:68:-3.74063,0,-2.69518	0/1:12:2,10:2:68:10:360:-20.3068,0,-2.84535	0/1:7:1,6:1:36:6:212:-11.9145,0,-1.49106	0/1:5:2,3:2:72:3:104:-5.16649,0,-5.33157	0/1:6:3,3:3:108:3:108:-5.3582,0,-8.26899	0/1:204:77,127:77:2749:127:4564:-230.697,0,-186.241	0/1:211:97,114:97:3472:114:4084:-204.292,0,-248.87	0/1:59:33,26:33:1188:26:920:-42.8582,0,-89.4678	1/1:2:0,2:0:0:2:72:-4.68712,-0.60206,0	0/1:128:46,82:46:1599:82:2936:-150.083,0,-105.662	0/1:35:18,17:18:640:17:604:-29.1665,0,-47.3933	0/1:156:83,73:83:2953:73:2612:-123.402,0,-218.997	0/1:86:45,41:45:1612:41:1476:-67.7843,0,-119.481	0/1:62:20,42:20:716:42:1504:-77.2306,0,-46.1039	0/1:53:20,33:20:716:33:1184:-62.4832,0,-48.8131	0/1:54:10,44:10:360:44:1576:-88.7765,0,-16.4887	0/1:63:23,40:23:824:40:1432:-80.5429,0,-55.5184	0/1:78:13,65:13:460:65:2332:-136.199,0,-18.255	0/1:107:43,64:43:1544:64:2300:-118.605,0,-107.042	0/1:147:43,104:43:1544:104:3736:-212.136,0,-95.0017	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:105:29,76:29:1013:76:2724:-142.92,0,-59.8712	0/1:22:8,14:8:288:14:504:-30.8948,0,-19.6447	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:105:37,68:37:1328:68:2440:-125.115,0,-88.2141	0/1:36:15,21:15:540:21:752:-40.4464,0,-38.0995	1/1:1:0,1:0:0:1:36:-2.55871,-0.30103,0	0/1:10:4,6:4:144:6:216:-11.9716,0,-10.3033	0/1:50:16,34:16:572:34:1216:-61.7137,0,-36.7619	0/1:175:68,107:68:2444:107:3839:-187.378,0,-167.534	0/1:2:1,1:1:36:1:36:-1.95665,0,-2.99621	0/1:152:56,96:56:2012:96:3440:-190.706,0,-135.597	0/1:167:91,76:91:3257:76:2701:-134.221,0,-243.049	0/1:46:30,16:30:1080:16:568:-23.4444,0,-83.6659	0/1:58:25,33:25:900:33:1180:-62.8115,0,-63.8613	0/1:130:53,77:53:1908:77:2756:-147.005,0,-132.864	0/1:89:38,51:38:1356:51:1832:-96.1439,0,-95.5488	0/1:19:5,14:5:180:14:496:-24.4244,0,-10.8325	0/1:97:45,52:45:1612:52:1845:-89.8146,0,-116.17	0/1:111:39,72:39:1400:72:2580:-136.018,0,-92.8849	0/1:19:11,8:11:392:8:288:-14.7589,0,-29.9005	0/1:88:23,65:23:828:65:2340:-124.22,0,-48.3535	0/1:37:14,23:14:504:23:828:-41.9155,0,-34.56	0/1:148:48,100:48:1720:100:3587:-182.752,0,-110.306	0/1:92:44,48:44:1560:48:1720:-89.8476,0,-112.997	0/1:74:13,61:13:464:61:2173:-118.594,0,-19.8213	0/1:60:30,30:30:1076:30:1064:-51.7709,0,-79.0911	0/1:6:4,2:4:144:2:72:-3.05536,0,-11.5074	0/1:81:34,47:34:1216:47:1688:-83.2531,0,-85.3631	0/1:90:36,54:36:1296:54:1924:-96.6372,0,-89.661	0/1:148:28,120:28:993:120:4275:-241.917,0,-45.1301	0/1:143:60,83:60:2144:83:2961:-147.218,0,-150.18	0/1:76:29,47:29:1040:47:1688:-83.4945,0,-71.0361	0/1:85:29,56:29:1044:56:2004:-101.159,0,-68.6873	0/1:158:73,85:73:2624:85:3047:-141.394,0,-188.844	0/1:54:32,22:32:1152:22:788:-36.4028,0,-87.7345	0/1:66:40,26:40:1417:26:932:-40.2112,0,-107.957	0/1:62:32,30:32:1152:30:1064:-51.4063,0,-85.3263	0/1:46:12,34:12:432:34:1224:-59.5807,0,-25.3738	0/1:120:55,65:55:1942:65:2328:-101.335,0,-138.929	0/1:83:40,43:40:1432:43:1544:-71.1683,0,-104.192	0/1:103:25,78:25:896:78:2800:-158.251,0,-49.9543	0/1:91:34,57:34:1220:57:2048:-100.25,0,-82.7131
chr05	18575515	.	T	G	24720.5	PASS	AB=0.277698;ABP=3276.84;AC=83;AF=0.441489;AN=188;AO=2135;CIGAR=1X;DP=7921;DPB=7921;DPRA=15.0939;EPP=4639.1;EPPR=12558.5;GTI=18;LEN=1;MEANALT=1.04598;MQM=59.9789;MQMR=32.391;NS=94;NUMALT=1;ODDS=1.13343;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76511;QR=206458;RO=5782;RPL=2135;RPP=4639.1;RPPR=12558.5;RPR=0;RUN=1;SAF=0;SAP=4639.1;SAR=2135;SRF=0;SRP=12558.5;SRR=5782;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:28,8:28:981:8:288:-15.4303,0,-63.7306	0/1:138:66,72:66:2349:72:2584:-191.267,0,-109.777	0/1:161:137,24:137:4886:24:864:-29.6167,0,-289.297	0/1:152:100,52:100:3573:52:1864:-122.283,0,-191.165	0/0:42:39,3:39:1400:3:108:0,-2.56809,-85.0155	0/1:24:14,10:14:504:10:356:-25.1565,0,-25.2709	0/0:105:97,8:97:3454:8:288:0,-5.34074,-233.39	0/1:87:54,33:54:1924:33:1184:-80.6787,0,-99.2749	0/1:115:96,19:96:3418:19:684:-27.2719,0,-218.272	0/1:132:87,45:87:3097:45:1600:-104.554,0,-167.243	0/1:59:43,16:43:1540:16:576:-34.4142,0,-81.413	0/1:66:55,11:55:1980:11:396:-16.1148,0,-133.971	0/1:69:57,12:57:2048:12:428:-18.0877,0,-137.405	0/1:80:68,12:68:2448:12:432:-15.1388,0,-139.871	0/1:76:39,36:39:1404:36:1288:-93.2866,0,-66.5524	0/1:63:39,24:39:1400:24:864:-59.1177,0,-67.0641	0/1:71:46,25:46:1621:25:884:-58.5052,0,-84.7666	0/1:44:13,31:13:453:31:1108:-86.7857,0,-16.5295	0/1:32:18,14:18:629:14:500:-35.7032,0,-31.5007	0/1:164:131,33:131:4666:33:1188:-57.8597,0,-290.228	0/1:118:75,43:75:2673:43:1540:-103.372,0,-136.553	0/1:111:91,20:91:3241:20:716:-31.3534,0,-206.26	0/1:88:72,16:72:2576:16:576:-25.682,0,-175.658	0/1:132:98,34:98:3509:34:1212:-69.6504,0,-210.139	0/1:54:44,10:44:1584:10:360:-16.4887,0,-85.6085	0/1:277:171,106:171:6121:106:3812:-259.891,0,-336.847	0/1:156:141,15:141:5041:15:540:-1.97586,0,-303.077	0/1:41:35,6:35:1256:6:216:-7.44361,0,-78.0325	0/1:220:189,31:189:6746:31:1108:-33.8044,0,-422.939	0/1:160:128,32:128:4568:32:1148:-55.465,0,-288.941	0/1:106:69,37:69:2465:37:1322:-87.3726,0,-137.144	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.96328	0/1:12:10,2:10:345:2:72:-3.22436,0,-19.6565	0/0:6:6,0:6:216:0:0:0,-1.80618,-15.0258	0/1:5:3,2:3:104:2:72:-5.33157,0,-5.20036	0/1:6:5,1:5:180:1:36:-1.79209,0,-11.8767	0/1:202:128,74:128:4562:74:2652:-178.118,0,-233.398	0/1:211:117,94:117:4127:94:3372:-240.049,0,-210.685	0/1:59:26,33:26:932:33:1180:-88.7473,0,-43.2498	0/0:2:2,0:2:72:0:0:0,-0.60206,-4.68712	0/1:127:108,19:108:3861:19:672:-22.576,0,-235.413	0/1:35:29,6:29:1040:6:216:-9.25446,0,-67.7728	0/1:153:120,32:120:4293:32:1137:-56.5207,0,-275.251	0/1:84:64,20:64:2292:20:720:-39.8423,0,-143.386	0/1:63:43,20:43:1525:20:716:-45.8028,0,-78.6764	0/1:53:33,20:33:1176:20:712:-48.4521,0,-62.3824	0/1:52:42,10:42:1496:10:360:-17.0907,0,-83.7426	0/1:62:56,6:56:2000:6:216:-1.12665,0,-133.103	0/1:81:66,15:66:2372:15:536:-24.1914,0,-137.513	0/1:107:63,44:63:2245:44:1580:-110.28,0,-115.678	0/1:149:105,44:105:3768:44:1576:-97.2781,0,-213.795	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:105:75,30:75:2665:30:1080:-65.9051,0,-140.259	0/1:22:14,8:14:504:8:288:-19.6447,0,-30.8948	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:104:92,12:92:3285:12:432:-7.91408,0,-203.45	0/1:35:21,14:21:756:14:504:-35.162,0,-40.7979	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.55871	0/1:10:6,4:6:216:4:144:-10.3033,0,-11.9716	0/1:50:34,16:34:1208:16:572:-36.7619,0,-61.6326	0/1:174:137,37:137:4904:37:1332:-67.8032,0,-285.663	0/1:2:1,1:1:36:1:36:-2.99621,0,-1.95665	0/1:150:124,25:124:4441:25:896:-35.7471,0,-283.084	0/1:166:127,39:127:4556:39:1392:-75.5796,0,-300.322	0/1:44:30,14:30:1065:14:496:-31.7289,0,-69.6614	0/1:59:52,7:52:1853:7:252:-5.26819,0,-122.689	0/1:128:78,50:78:2732:50:1800:-123.75,0,-147.627	0/0:88:83,5:83:2976:5:180:0,-9.93857,-209.64	0/0:17:16,1:16:568:1:36:0,-1.51923,-34.5843	0/1:93:73,20:73:2624:20:720:-37.133,0,-160.598	0/1:109:95,13:95:3412:13:464:-9.22666,0,-210.811	0/0:19:19,0:19:684:0:0:0,-5.71957,-56.1473	0/1:86:64,22:64:2292:22:784:-44.9953,0,-121.431	0/1:36:22,14:22:788:14:504:-34.861,0,-39.8632	0/1:148:100,48:100:3584:48:1720:-110.533,0,-183.235	0/1:92:48,44:48:1724:44:1576:-114.437,0,-89.9211	0/1:74:65,9:65:2259:9:324:-7.22964,0,-130.161	0/1:58:29,29:29:1017:29:1044:-76.8151,0,-49.59	0/0:6:6,0:6:216:0:0:0,-1.80618,-17.8846	0/1:81:48,33:48:1720:33:1180:-82.1246,0,-86.4525	0/1:87:65,22:65:2241:22:792:-45.4161,0,-131.338	0/1:146:118,28:118:4240:28:992:-45.644,0,-238.331	0/1:143:84,59:84:3016:59:2116:-147.661,0,-150.308	0/1:75:62,13:62:2213:13:468:-19.8824,0,-132.489	0/1:83:55,28:55:1972:28:1004:-65.6904,0,-99.3464	0/1:155:127,28:127:4545:28:1008:-44.3767,0,-279.105	0/1:53:41,12:41:1472:12:428:-22.9042,0,-97.9952	0/1:66:27,39:27:968:39:1388:-105.351,0,-43.4453	0/1:61:30,31:30:1076:31:1108:-81.6682,0,-51.8586	0/1:46:34,12:34:1216:12:432:-25.3738,0,-59.4982	0/1:118:100,18:100:3596:18:648:-23.1303,0,-216.008	0/1:82:69,13:69:2484:13:464:-17.4131,0,-155.745	0/1:102:78,24:78:2788:24:864:-47.3775,0,-158.889	0/1:89:57,32:57:2029:32:1148:-76.8382,0,-100.38
chr05	18815736	.	C	T	63576.6	PASS	AB=0.485795;ABP=16.7061;AC=48;AF=0.255319;AN=188;AO=3798;CIGAR=1X;DP=12582;DPB=12582;DPRA=1.52073;EPP=8250.26;EPPR=19066.4;GTI=1;LEN=1;MEANALT=1.06;MQM=59.9882;MQMR=59.9733;NS=94;NUMALT=1;ODDS=4.42475;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135926;QR=314404;RO=8779;RPL=0;RPP=8250.26;RPPR=19066.4;RPR=3798;RUN=1;SAF=3798;SAP=8250.26;SAR=0;SRF=8779;SRP=19066.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:21,17:21:752:17:608:-43.6129,0,-56.5533	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:88:49,39:49:1756:39:1400:-99.8085,0,-131.833	0/0:146:146,0:146:5228:0:0:0,-43.9504,-470.658	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:60:42,18:42:1512:18:648:-40.5901,0,-118.313	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/1:90:50,40:50:1796:40:1417:-100.733,0,-134.826	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:239:239,0:239:8576:0:0:0,-71.9462,-771.834	0/1:114:52,62:52:1864:62:2232:-166.826,0,-133.722	0/1:71:37,34:37:1328:34:1220:-88.7337,0,-98.4491	0/1:47:21,26:21:756:26:928:-69.6885,0,-54.2188	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.386	0/1:65:40,25:40:1440:25:896:-61.3934,0,-110.331	0/0:95:95,0:95:3385:0:0:0,-28.5978,-304.865	0/1:40:25,15:25:896:15:525:-35.5369,0,-68.9192	0/1:50:28,22:28:1000:22:792:-56.5542,0,-75.2639	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:131:131,0:131:4692:0:0:0,-39.4349,-422.44	0/1:175:91,84:91:3260:84:3005:-217.999,0,-240.94	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/1:111:61,50:61:2192:50:1780:-127.069,0,-164.131	0/1:47:30,17:30:1080:17:612:-41.265,0,-83.3648	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:484:288,196:288:10313:196:7017:-485.89,0,-782.393	0/0:378:377,0:377:13477:0:0:0,-113.488,-1212.36	0/1:327:159,168:159:5684:168:6024:-443.826,0,-413.243	0/0:769:769,0:769:27529:0:0:0,-231.492,-2476.79	0/1:637:345,291:345:12361:291:10421:-746.138,0,-920.659	0/0:143:143,0:143:5136:0:0:0,-43.0473,-462.38	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:249:249,0:249:8927:0:0:0,-74.9565,-803.408	0/1:161:75,86:75:2692:86:3076:-228.603,0,-194.058	0/1:72:38,34:38:1360:34:1224:-88.7929,0,-101.026	0/1:154:78,76:78:2792:76:2720:-198.685,0,-205.162	0/1:87:40,47:40:1428:47:1680:-125.29,0,-102.628	0/1:59:29,30:29:1040:30:1072:-79.0317,0,-75.3678	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.691	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.517	0/0:86:85,0:85:3044:0:0:0,-25.5875,-273.83	0/1:72:49,23:49:1760:23:820:-52.4484,0,-137.01	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:415:165,250:165:5904:250:8962:-681.632,0,-406.542	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:248:119,129:119:4260:129:4574:-337.165,0,-308.923	0/1:72:37,35:37:1324:35:1252:-91.3109,0,-97.7879	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:422:185,237:185:6644:237:8491:-637.153,0,-471.001	0/1:440:218,222:218:7782:222:7941:-582.26,0,-567.957	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:69:40,29:40:1432:29:1044:-73.5037,0,-108.379	0/1:273:158,115:158:5676:115:4116:-288.444,0,-428.775	0/1:69:54,15:54:1936:15:540:-28.1655,0,-153.745	0/1:98:46,52:46:1652:52:1864:-138.538,0,-119.468	0/1:30:8,22:8:284:22:792:-62.5748,0,-16.8725	0/1:56:26,30:26:928:30:1076:-80.2952,0,-66.9806	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/1:104:31,73:31:1116:73:2618:-204.56,0,-69.4446	0/1:329:158,171:158:5663:171:6136:-453.299,0,-410.749	0/1:39:15,24:15:540:24:848:-64.8995,0,-37.1964	0/1:45:21,24:21:744:24:860:-64.1755,0,-53.738	0/1:395:243,151:243:8688:151:5374:-364.826,0,-662.631	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/0:81:81,0:81:2888:0:0:0,-24.3834,-259.939	0/0:89:88,1:88:3137:1:36:0,-23.1934,-278.957	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:120:52,68:52:1872:68:2424:-182.293,0,-132.635	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:611:374,237:374:13370:237:8489:-580.079,0,-1019.17	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:72:41,31:41:1468:31:1108:-78.3568,0,-110.742	0/0:142:142,0:142:5092:0:0:0,-42.7463,-458.423	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.026	0/1:50:25,25:25:896:25:896:-65.9089,0,-65.9089	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:101:40,61:40:1440:61:2192:-167.141,0,-99.4937	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:67:66,1:66:2360:1:36:0,-16.5707,-209.06	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:252:252,0:252:9040:0:0:0,-75.8596,-813.575	0/1:569:257,312:257:9216:312:11156:-832.623,0,-658.109	0/1:76:23,52:23:824:52:1868:-145.462,0,-51.5463	0/0:170:170,0:170:6087:0:0:0,-51.1751,-547.797	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699
chr05	18815748	.	G	A	187363	PASS	AB=0.512451;ABP=13.5543;AC=140;AF=0.744681;AN=188;AO=8797;CIGAR=1X;DP=12620;DPB=12620;DPRA=0;EPP=17275.4;EPPR=8151.03;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9654;MQMR=59.9908;NS=94;NUMALT=1;ODDS=4.29034;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313972;QR=136147;RO=3820;RPL=216;RPP=17275.4;RPPR=8151.03;RPR=8581;RUN=1;SAF=8797;SAP=19105.5;SAR=0;SRF=3820;SRP=8298.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:17,21:17:603:21:752:-56.5533,0,-43.1604	1/1:63:1,62:1:36:62:2198:-194.484,-15.3666,0	0/1:87:37,50:37:1309:50:1792:-135.373,0,-91.9199	1/1:144:0,144:0:0:144:5165:-464.987,-43.3483,0	1/1:42:0,42:0:0:42:1478:-133.31,-12.6433,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:58:18,40:18:644:40:1428:-111.358,0,-40.8309	1/1:92:0,92:0:0:92:3293:-296.587,-27.6948,0	0/1:90:40,50:40:1421:50:1784:-133.747,0,-101.093	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:239:1,238:1:36:238:8544:-765.357,-68.3479,0	0/1:114:62,52:62:2228:52:1872:-134.442,0,-166.466	0/1:68:31,37:31:1112:37:1332:-99.7123,0,-79.9213	0/1:46:26,20:26:936:20:720:-51.2814,0,-70.7087	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:68:0,68:0:0:68:2433:-219.224,-20.47,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:115:0,115:0:0:115:4089:-368.194,-34.6185,0	0/1:67:25,42:25:881:42:1512:-116.206,0,-59.4369	1/1:94:0,94:0:0:94:3384:-304.774,-28.2968,0	0/1:41:16,25:16:576:25:900:-68.9788,0,-39.8328	0/1:50:22,28:22:777:28:989:-74.2705,0,-55.1989	0/1:12:9,3:9:324:3:104:-6.09045,0,-25.8935	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	1/1:131:0,131:0:0:131:4667:-420.188,-39.4349,0	0/1:174:82,91:82:2952:91:3264:-241.542,0,-213.474	0/1:35:18,17:18:640:17:612:-44.8774,0,-47.3933	0/1:110:49,61:49:1734:61:2151:-160.739,0,-123.227	0/1:47:18,29:18:644:29:1032:-79.0451,0,-44.1422	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	0/1:482:195,287:195:6955:287:10235:-775.351,0,-480.916	1/1:381:1,380:1:36:380:13562:-1216.76,-111.094,0	0/1:328:168,160:168:6013:160:5722:-416.356,0,-442.535	1/1:775:0,775:0:0:775:27574:-2480.84,-233.298,0	0/1:633:290,343:290:10351:343:12299:-916.192,0,-740.956	1/1:143:0,143:0:0:143:5113:-460.312,-43.0473,0	1/1:44:0,44:0:0:44:1569:-141.5,-13.2453,0	1/1:247:0,247:0:0:247:8850:-796.476,-74.3544,0	0/1:160:85,75:85:3044:75:2681:-193.368,0,-226.025	0/1:72:36,36:36:1273:36:1292:-94.9096,0,-93.1968	0/1:158:78,79:78:2789:79:2836:-207.857,0,-203.627	0/1:87:47,40:47:1669:40:1401:-100.193,0,-124.288	0/1:59:29,30:29:1029:30:1069:-78.4352,0,-75.1604	1/1:63:0,63:0:0:63:2256:-203.289,-18.9649,0	1/1:113:0,113:0:0:113:4025:-362.437,-34.0164,0	1/1:83:0,83:0:0:83:2984:-268.791,-24.9855,0	0/1:74:25,49:25:885:49:1737:-134.336,0,-57.6903	1/1:40:0,40:0:0:40:1402:-126.473,-12.0412,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:414:250,164:250:8915:164:5851:-402.072,0,-677.706	1/1:57:0,57:0:0:57:2021:-182.159,-17.1587,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:248:131,117:131:4659:117:4127:-296.958,0,-344.808	0/1:74:35,39:35:1218:39:1404:-104.383,0,-87.6431	1/1:27:0,27:0:0:27:957:-86.4439,-8.12781,0	0/1:426:239,187:239:8530:187:6648:-470.157,0,-639.46	0/1:444:226,218:226:8052:218:7688:-558.298,0,-591.04	1/1:46:0,46:0:0:46:1646:-148.428,-13.8474,0	0/1:70:30,40:30:1068:40:1440:-108.798,0,-75.36	0/1:279:120,159:120:4270:159:5693:-428.499,0,-300.49	0/1:69:15,54:15:532:54:1928:-153.026,0,-27.442	0/1:99:52,47:52:1834:47:1639:-117.99,0,-135.535	0/1:32:24,8:24:864:8:288:-16.6344,0,-68.4496	0/1:57:31,26:31:1104:26:936:-67.4008,0,-82.5119	1/1:93:0,93:0:0:93:3278:-295.239,-27.9958,0	0/1:103:73,30:73:2605:30:1068:-65.426,0,-203.691	0/1:332:174,158:174:6181:158:5648:-408.497,0,-456.445	0/1:39:24,15:24:864:15:540:-37.1964,0,-66.3424	0/1:44:23,21:23:828:21:752:-54.7609,0,-61.5988	0/1:391:146,244:146:5198:244:8639:-659.187,0,-350.197	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:83:0,83:0:0:83:2923:-262.428,-24.9855,0	1/1:92:1,91:1:36:91:3226:-286.962,-24.0965,0	1/1:62:0,62:0:0:62:2213:-199.433,-18.6639,0	0/1:123:68,55:68:2425:55:1961:-139.737,0,-181.478	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:610:239,371:239:8516:371:13222:-1006.15,0,-582.809	1/1:58:0,58:0:0:58:2063:-185.939,-17.4597,0	0/1:72:32,40:32:1137:40:1427:-107.052,0,-80.9628	1/1:144:0,144:0:0:144:5123:-461.21,-43.3483,0	1/1:53:0,53:0:0:53:1908:-171.984,-15.9546,0	0/1:50:26,24:26:921:24:845:-61.3156,0,-68.1537	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:102:61,41:61:2162:41:1476:-102.431,0,-164.138	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	1/1:67:1,66:1:36:66:2372:-210.139,-16.5707,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:254:0,254:0:0:254:9091:-818.162,-76.4616,0	0/1:571:314,257:314:11179:257:9220:-657.854,0,-834.113	0/1:77:54,23:54:1936:23:828:-51.6648,0,-151.337	1/1:170:0,170:0:0:170:6100:-548.965,-51.1751,0	1/1:90:0,90:0:0:90:3231:-291.01,-27.0927,0
chr05	18815762	.	G	T	359605	PASS	AB=0.489632;ABP=13.1412;AC=140;AF=0.744681;AN=188;AO=13398;CIGAR=1X;DP=18950;DPB=18950;DPRA=0;EPP=1811.05;EPPR=1395.99;GTI=1;LEN=1;MEANALT=1.12766;MQM=59.9798;MQMR=59.9823;NS=94;NUMALT=1;ODDS=6.30859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=478792;QR=197138;RO=5539;RPL=378;RPP=25905.8;RPPR=11236.6;RPR=13020;RUN=1;SAF=8747;SAP=2722.17;SAR=4651;SRF=3805;SRP=1684.46;SRR=1734;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:35,20:35:1241:20:714:-48.0306,0,-95.4359	1/1:66:1,65:1:36:65:2336:-206.901,-16.2697,0	0/1:120:73,47:73:2590:47:1688:-116.083,0,-197.195	1/1:295:0,295:0:0:295:10577:-951.838,-88.8039,0	1/1:107:0,107:0:0:107:3807:-342.83,-32.2102,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:183:78,105:78:2774:105:3745:-282.161,0,-194.812	1/1:92:0,92:0:0:92:3291:-296.408,-27.6948,0	0/1:147:97,49:97:3423:49:1743:-112.988,0,-264.115	1/1:183:0,183:0:0:183:6507:-585.717,-55.0885,0	1/1:307:0,306:0:0:306:10953:-985.306,-92.1152,0	0/1:141:92,49:92:3300:49:1764:-116.599,0,-254.773	0/1:106:67,38:67:2361:38:1364:-91.0928,0,-180.778	0/1:155:87,68:87:3097:68:2428:-172.116,0,-232.294	1/1:149:0,149:0:0:149:5311:-478.127,-44.8535,0	1/1:120:0,120:0:0:120:4293:-386.546,-36.1236,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:116:0,116:0:0:116:4159:-374.492,-34.9195,0	0/1:172:74,98:74:2633:98:3496:-263.072,0,-185.439	1/1:181:0,181:0:0:181:6459:-581.398,-54.4864,0	0/1:97:58,39:58:2031:39:1393:-96.468,0,-153.857	0/1:146:72,74:72:2563:74:2620:-192.096,0,-186.956	0/1:112:59,53:59:2116:53:1896:-137.203,0,-156.993	1/1:103:0,103:0:0:103:3674:-330.863,-31.0061,0	1/1:434:0,434:0:0:434:15453:-1390.48,-130.647,0	0/1:353:168,185:168:5949:185:6623:-489.885,0,-429.258	0/1:76:38,38:38:1368:38:1368:-100.543,0,-100.543	0/1:310:134,176:134:4708:176:6276:-471.616,0,-330.565	0/1:126:63,63:63:2229:63:2246:-164.474,0,-162.934	1/1:151:0,151:0:0:151:5359:-482.447,-45.4555,0	0/1:481:193,287:193:6891:287:10276:-779.802,0,-475.4	1/1:389:0,389:0:0:389:13913:-1251.94,-117.101,0	0/1:326:167,159:167:5988:159:5708:-415.7,0,-440.889	1/1:770:0,768:0:0:768:27465:-2470.7,-231.191,0	0/1:628:289,339:289:10343:339:12130:-902.497,0,-741.743	1/1:342:0,341:0:0:341:12196:-1097.13,-102.651,0	1/1:106:0,106:0:0:106:3808:-342.916,-31.9092,0	1/1:251:0,251:0:0:251:9009:-810.779,-75.5585,0	0/1:162:86,76:86:3050:76:2705:-194.927,0,-225.961	0/1:165:81,84:81:2887:84:3016:-222,0,-210.397	0/1:191:100,91:100:3571:91:3259:-236.033,0,-264.101	0/1:179:92,87:92:3273:87:3108:-226.063,0,-240.898	0/1:162:88,74:88:3073:74:2637:-188.645,0,-228.033	1/1:138:0,138:0:0:138:4928:-443.658,-41.5421,0	1/1:184:0,184:0:0:184:6572:-591.563,-55.3895,0	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	0/1:159:59,99:59:2088:99:3544:-271.355,0,-140.373	1/1:170:0,170:0:0:170:6067:-546.134,-51.1751,0	1/1:176:0,176:0:0:176:6293:-566.463,-52.9813,0	1/1:129:0,129:0:0:129:4615:-415.514,-38.8329,0	0/1:424:256,168:256:9161:168:5999:-412.375,0,-696.824	1/1:57:0,57:0:0:57:2039:-183.781,-17.1587,0	1/1:86:0,86:0:0:86:3051:-274.818,-25.8886,0	0/1:254:136,118:136:4857:118:4233:-304.685,0,-360.815	0/1:168:75,93:75:2642:93:3332:-249.524,0,-187.452	1/1:69:0,69:0:0:69:2463:-221.924,-20.7711,0	0/1:426:242,184:242:8654:184:6596:-465.48,0,-650.612	0/1:449:226,223:226:8093:223:7959:-581.169,0,-593.223	1/1:129:0,128:0:0:128:4562:-410.388,-38.5318,0	0/1:177:85,92:85:2987:92:3296:-243.549,0,-215.781	0/1:284:121,160:121:4321:160:5723:-430.238,0,-304.116	0/1:181:66,115:66:2345:115:4124:-316.857,0,-156.821	0/1:229:119,110:119:4231:110:3936:-285.497,0,-312.034	0/1:88:58,30:58:2065:30:1068:-69.9414,0,-159.629	0/1:97:52,45:52:1808:45:1620:-116.89,0,-133.794	1/1:204:2,202:2:72:202:7186:-639.961,-54.5734,0	0/1:135:101,34:101:3591:34:1224:-69.828,0,-282.757	0/1:364:194,170:194:6912:170:6116:-440.962,0,-512.569	0/1:57:42,15:42:1504:15:532:-31.0544,0,-118.496	0/1:150:74,76:74:2618:76:2715:-199.439,0,-190.713	0/1:422:162,260:162:5769:260:9270:-707.16,0,-392.29	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:82:0,82:0:0:82:2888:-259.697,-24.6845,0	1/1:287:1,286:1:36:286:10216:-915.769,-82.7973,0	1/1:190:0,190:0:0:190:6761:-608.567,-57.1957,0	0/1:174:119,55:119:4228:55:1968:-125.016,0,-328.321	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	0/1:609:241,368:241:8614:368:13163:-1001.14,0,-591.926	1/1:176:0,176:0:0:176:6296:-566.734,-52.9813,0	0/1:129:88,41:88:3111:41:1476:-94.3033,0,-241.384	1/1:309:0,309:0:0:309:10994:-989.359,-93.0183,0	1/1:175:2,173:2:72:173:6180:-549.446,-45.8435,0	0/1:141:75,66:75:2673:66:2352:-169.494,0,-198.369	1/1:151:2,149:2:68:149:5306:-471.249,-39.0277,0	0/1:265:137,128:137:4815:128:4591:-333.58,0,-353.734	0/1:45:35,10:35:1251:10:360:-19.198,0,-99.3479	1/1:65:0,65:0:0:65:2319:-208.969,-19.567,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:300:0,300:0:0:300:10735:-966.054,-90.309,0	0/1:664:359,305:359:12846:305:10882:-779.393,0,-956.057	0/1:167:118,49:118:4211:49:1752:-107.692,0,-328.899	1/1:326:0,326:0:0:326:11604:-1044.23,-98.1358,0	1/1:219:0,218:0:0:218:7801:-701.758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chr05	18815784	.	C	T	122282	PASS	AB=0.495269;ABP=5.16768;AC=48;AF=0.255319;AN=188;AO=5503;CIGAR=1X;DP=20154;DPB=20154;DPRA=1.21433;EPP=11943.9;EPPR=31784.7;GTI=0;LEN=1;MEANALT=1.07407;MQM=59.992;MQMR=59.9867;NS=94;NUMALT=1;ODDS=28.8766;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196344;QR=516703;RO=14640;RPL=3796;RPP=1725;RPPR=713.091;RPR=1707;RUN=1;SAF=3797;SAP=1728.3;SAR=1706;SRF=8413;SRP=711.794;SRR=6227;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:44,37:44:1558:37:1324:-95.0787,0,-116.127	0/0:189:188,1:188:6687:1:36:0,-53.2964,-598.311	0/1:147:77,70:77:2741:70:2490:-180.1,0,-202.68	0/0:294:293,1:293:10332:1:36:0,-84.9045,-926.216	0/0:111:111,0:111:3896:0:0:0,-33.4143,-350.831	0/0:50:50,0:50:1772:0:0:0,-15.0515,-159.76	0/1:183:105,78:105:3731:78:2775:-194.904,0,-280.904	0/0:205:205,0:205:7259:0:0:0,-61.7111,-653.364	0/1:183:89,94:89:3158:94:3353:-246.898,0,-229.354	0/0:183:183,0:183:6457:0:0:0,-55.0885,-581.216	0/0:302:302,0:302:10527:0:0:0,-90.9111,-947.37	0/1:178:83,95:83:2899:95:3375:-250.384,0,-207.561	0/1:140:73,67:73:2574:67:2396:-173.753,0,-189.766	0/1:158:70,88:70:2480:88:3141:-235.352,0,-175.889	0/0:138:138,0:138:4891:0:0:0,-41.5421,-440.344	0/0:116:116,0:116:4061:0:0:0,-34.9195,-365.681	0/0:123:123,0:123:4329:0:0:0,-37.0267,-389.786	0/0:85:85,0:85:3001:0:0:0,-25.5875,-270.322	0/0:166:166,0:166:5788:0:0:0,-49.971,-521.043	0/1:175:99,76:99:3535:76:2698:-190.381,0,-265.679	0/0:189:188,0:188:6665:0:0:0,-56.5936,-599.569	0/1:95:38,57:38:1351:57:2044:-155.634,0,-93.2917	0/1:143:71,72:71:2509:72:2575:-188.95,0,-183.014	0/1:116:58,58:58:2040:58:2076:-152.191,0,-148.951	0/0:105:105,0:105:3713:0:0:0,-31.6081,-334.374	0/0:432:432,0:432:15352:0:0:0,-130.045,-1381.4	0/1:357:191,165:191:6720:165:5886:-422.326,0,-497.354	0/1:80:41,39:41:1444:39:1400:-102.217,0,-106.173	0/1:315:180,135:180:6398:135:4809:-338.142,0,-481.086	0/1:125:61,64:61:2165:64:2292:-168.913,0,-157.487	0/0:152:152,0:152:5419:0:0:0,-45.7566,-487.839	0/1:474:282,191:282:9944:191:6830:-472.023,0,-751.536	0/0:381:380,0:380:13356:0:0:0,-114.391,-1201.5	0/1:326:156,170:156:5502:170:6075:-448.715,0,-397.171	0/0:775:774,0:774:27145:0:0:0,-232.997,-2441.94	0/1:638:343,295:343:12029:295:10553:-757.615,0,-890.423	0/0:337:337,0:337:11953:0:0:0,-101.447,-1075.64	0/0:109:109,0:109:3883:0:0:0,-32.8123,-349.666	0/0:321:321,0:321:11289:0:0:0,-96.6306,-1015.92	0/1:165:76,89:76:2619:89:3160:-234.954,0,-186.285	0/1:166:88,78:88:3126:78:2783:-200.74,0,-230.234	0/1:183:84,98:84:2943:98:3508:-260.783,0,-209.958	0/1:175:83,92:83:2902:92:3281:-242.829,0,-208.734	0/1:152:68,84:68:2387:84:2991:-223.665,0,-169.329	0/0:134:134,0:134:4713:0:0:0,-40.338,-424.332	0/0:180:180,0:180:6351:0:0:0,-54.1854,-571.684	0/0:178:176,0:176:6265:0:0:0,-52.9813,-563.584	0/1:156:98,58:98:3461:58:2066:-139.25,0,-264.741	0/0:169:169,0:169:6023:0:0:0,-50.8741,-542.174	0/0:170:170,0:170:6031:0:0:0,-51.1751,-542.895	0/0:132:132,0:132:4685:0:0:0,-39.736,-421.813	0/1:423:169,254:169:5952:254:9097:-691.367,0,-408.459	0/0:143:143,0:143:5015:0:0:0,-43.0473,-451.501	0/0:85:85,0:85:3016:0:0:0,-25.5875,-271.67	0/1:245:117,128:117:4075:128:4577:-338.336,0,-293.187	0/1:169:95,74:95:3374:74:2643:-187.242,0,-253.003	0/0:68:68,0:68:2418:0:0:0,-20.47,-217.875	0/1:422:182,240:182:6400:240:8571:-644.353,0,-449.059	0/1:451:219,231:219:7753:231:8244:-606.149,0,-561.986	0/0:137:137,0:137:4881:0:0:0,-41.2411,-439.443	0/1:163:80,83:80:2847:83:2945:-216.218,0,-207.401	0/1:279:157,122:157:5618:122:4369:-309.395,0,-421.753	0/1:177:113,64:113:4031:64:2272:-151.461,0,-309.697	0/1:229:112,117:112:3971:117:4180:-307.447,0,-288.648	0/1:88:31,57:31:1112:57:2028:-156.302,0,-73.9007	0/1:102:49,53:49:1737:53:1888:-139.493,0,-125.907	0/0:201:199,2:199:7018:2:72:0,-53.6703,-624.849	0/1:134:32,102:32:1126:102:3636:-287.106,0,-61.3086	0/1:363:169,194:169:5951:194:6924:-513.953,0,-426.433	0/1:72:30,42:30:1053:42:1496:-113.26,0,-73.4044	0/1:152:75,77:75:2672:77:2740:-201.086,0,-194.97	0/1:415:256,159:256:8999:159:5677:-386.122,0,-684.839	0/0:128:128,0:128:4535:0:0:0,-38.5318,-408.319	0/0:145:145,0:145:5122:0:0:0,-43.6493,-460.251	0/0:294:293,1:293:10378:1:36:0,-84.9045,-930.351	0/0:184:184,0:184:6540:0:0:0,-55.3895,-588.686	0/1:256:138,118:138:4913:118:4192:-300.396,0,-365.256	0/0:181:181,0:181:6424:0:0:0,-54.4864,-578.247	0/1:599:359,240:359:12561:240:8578:-591.699,0,-950.02	0/0:185:185,0:185:6615:0:0:0,-55.6905,-595.43	0/1:170:84,86:84:2945:86:3076:-225.894,0,-214.109	0/0:304:303,0:303:10750:0:0:0,-91.2121,-967.191	0/0:168:168,0:168:5955:0:0:0,-50.573,-536.061	0/1:136:67,69:67:2363:69:2460:-180.715,0,-171.989	0/0:148:147,0:147:5177:0:0:0,-44.2514,-465.719	0/1:252:122,130:122:4322:130:4652:-342.983,0,-313.3	0/1:57:25,32:25:869:32:1131:-84.939,0,-61.3652	0/0:147:146,1:146:5095:1:36:0,-40.6531,-455.105	0/0:133:133,0:133:4715:0:0:0,-40.037,-424.511	0/0:296:295,1:295:10343:1:36:0,-85.5066,-927.217	0/1:670:309,361:309:10722:361:12807:-950.766,0,-763.199	0/1:162:49,113:49:1720:113:4028:-313.943,0,-106.315	0/0:177:177,0:177:6275:0:0:0,-53.2823,-564.846	0/0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chr05	19055306	.	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chr05	19216253	.	GTAT	CTAT,CTAC	148379	PASS	AB=0.491505,0.505812;ABP=5.11317,3.99474;AC=139,49;AF=0.739362,0.260638;AN=188;AO=5191,1716;CIGAR=1X3M,1X2M1X;DP=6926;DPB=6926;DPRA=30.0913,1.08855;EPP=11231.7,3720.58;EPPR=9.52472;GTI=1;LEN=1,4;MEANALT=1.75,2.12727;MQM=59.9952,59.8613;MQMR=58.6667;NS=94;NUMALT=2;ODDS=1.97564;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=185531,60576;QR=87;RO=3;RPL=5,1;RPP=11231.7,3720.58;RPPR=9.52472;RPR=5186,1715;RUN=1,1;SAF=0,0;SAP=11275.1,3729.26;SAR=5191,1716;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:56:0,21,35:0:0:21,35:756,1233:-162.426,-100.737,-94.4155,-62.0456,0,-51.5095	1/1:55:0,54,0:0:0:54,0:1925,0:-173.165,-16.2556,0,-173.165,-16.2556,-173.165	1/2:99:0,52,47:0:0:52,47:1864,1660:-287.476,-135.446,-119.792,-152.386,0,-138.237	1/1:162:0,160,0:0:0:160,0:5756,0:-517.873,-48.1648,0,-517.873,-48.1648,-517.873	1/1:32:0,30,1:0:0:30,1:1076,36:-96.8446,-9.0309,0,-93.907,-6.03854,-93.606	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/2:59:0,34,25:0:0:34,25:1224,867:-170.698,-70.818,-60.583,-100.232,0,-92.7063	1/1:78:0,74,4:0:0:74,4:2633,144:-236.856,-22.2762,0,-225.106,-10.1667,-223.902	1/2:177:0,88,88:0:0:88,88:3130,3122:-509.438,-254.357,-227.867,-255.161,0,-228.67	1/1:104:0,104,0:0:0:104,0:3717,0:-334.73,-31.3071,0,-334.73,-31.3071,-334.73	1/1:27:0,27,0:0:0:27,0:960,0:-86.7163,-8.12781,0,-86.7163,-8.12781,-86.7163	1/2:65:0,31,34:0:0:31,34:1116,1200:-189.133,-98.0698,-88.7378,-91.4198,0,-81.1847	1/2:51:0,23,28:0:0:23,28:809,1002:-147.917,-82.0671,-75.1434,-66.2046,0,-57.7758	1/2:43:0,21,22:0:0:21,22:752,769:-124.238,-62.907,-56.5854,-61.6846,0,-55.062	1/1:48:0,48,0:0:0:48,0:1712,0:-154.366,-14.4494,0,-154.366,-14.4494,-154.366	1/1:41:0,41,0:0:0:41,0:1463,0:-131.964,-12.3422,0,-131.964,-12.3422,-131.964	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3154,-8.42884,0,-90.3154,-8.42884,-90.3154	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:188:0,100,87:0:0:100,87:3592,3057:-541.837,-248.809,-218.706,-293.023,0,-266.833	1/1:155:0,155,0:0:0:155,0:5537,0:-498.454,-46.6597,0,-498.454,-46.6597,-498.454	1/2:90:0,30,60:0:0:30,60:1072,2115:-259.962,-172.556,-163.525,-87.7616,0,-69.6998	1/2:129:0,79,50:0:0:79,50:2820,1725:-370.386,-140.478,-116.696,-230.258,0,-215.207	1/2:54:0,28,26:0:0:28,26:1008,913:-156.887,-74.6345,-66.2056,-82.6075,0,-74.7807	1/1:94:0,93,1:0:0:93,1:3310,36:-297.757,-27.9958,0,-294.82,-24.6985,-294.519	1/1:267:0,263,4:0:0:263,4:9441,144:-849.285,-79.1709,0,-837.535,-67.0614,-836.331	1/2:200:0,109,91:0:0:109,91:3887,3226:-580.023,-263.168,-230.356,-317.21,0,-289.816	1/2:21:0,6,15:0:0:6,15:216,523:-60.5109,-42.8831,-41.0769,-17.9843,0,-13.4689	1/2:221:0,119,102:0:0:119,102:4261,3607:-641.583,-294.095,-258.272,-347.844,0,-317.139	1/2:129:0,72,57:0:0:72,57:2584,2022:-375.867,-165.093,-143.419,-211.13,0,-193.971	1/1:122:0,122,0:0:0:122,0:4372,0:-393.653,-36.7257,0,-393.653,-36.7257,-393.653	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	2/2:1:0,0,1:0:0:0,1:0,34:-3.39891,-3.39891,-3.39891,-0.30103,-0.30103,0	1/1:148:0,147,0:0:0:147,0:5252,0:-472.456,-44.2514,0,-472.456,-44.2514,-472.456	1/1:95:0,95,0:0:0:95,0:3395,0:-305.76,-28.5979,0,-305.76,-28.5979,-305.76	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:5:0,2,3:0:0:2,3:72,92:-13.5765,-7.68032,-7.07826,-6.23466,0,-5.33157	1/2:110:0,52,58:0:0:52,58:1872,2067:-321.571,-168.824,-153.17,-153.106,0,-135.646	1/2:11:0,5,6:0:0:5,6:180,215:-32.5808,-17.893,-16.3878,-15.0469,0,-13.2407	1/2:132:0,65,66:0:0:65,66:2327,2325:-379.208,-189.44,-169.873,-189.92,0,-170.052	1/2:29:0,18,11:0:0:18,11:633,378:-82.5677,-31.0378,-25.6192,-51.8765,0,-48.5652	1/1:43:0,43,0:0:0:43,0:1520,0:-137.091,-12.9443,0,-137.091,-12.9443,-137.091	1/1:122:0,122,0:0:0:122,0:4373,0:-393.742,-36.7257,0,-393.742,-36.7257,-393.742	1/1:74:0,74,0:0:0:74,0:2637,0:-237.576,-22.2762,0,-237.576,-22.2762,-237.576	1/2:95:0,53,42:0:0:53,42:1896,1466:-274.199,-119.589,-103.634,-154.963,0,-142.32	1/1:98:0,98,0:0:0:98,0:3505,0:-315.659,-29.5009,0,-315.659,-29.5009,-315.659	1/1:105:0,104,0:0:0:104,0:3715,0:-334.192,-31.3071,0,-334.192,-31.3071,-334.192	1/1:92:0,92,0:0:0:92,0:3277,0:-295.149,-27.6948,0,-295.149,-27.6948,-295.149	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:82:0,82,0:0:0:82,0:2879,0:-259.343,-24.6845,0,-259.343,-24.6845,-259.343	1/1:35:0,35,0:0:0:35,0:1241,0:-111.993,-10.5361,0,-111.993,-10.5361,-111.993	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/2:115:0,61,54:0:0:61,54:2192,1877:-331.779,-152.949,-134.586,-179.183,0,-162.927	1/1:37:0,36,1:0:0:36,1:1273,36:-114.511,-10.8371,0,-111.574,-7.5398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chr05	19596747	.	C	T	76775	PASS	AB=0.391439;ABP=1323.14;AC=93;AF=0.494681;AN=188;AO=5048;CIGAR=1X;DP=12903;DPB=12903;DPRA=19.8095;EPP=10912.5;EPPR=17031.7;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.983;MQMR=53.5731;NS=94;NUMALT=1;ODDS=84.4161;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180853;QR=280667;RO=7850;RPL=5042;RPP=10912.5;RPPR=17040.4;RPR=6;RUN=1;SAF=0;SAP=10964.6;SAR=5048;SRF=1;SRP=17040.4;SRR=7849;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:17,6:17:612:6:216:-12.8668,0,-47.4709	0/1:168:48,120:48:1728:120:4289:-335.613,0,-103.9	0/1:181:132,49:132:4685:49:1756:-103.838,0,-365.176	0/1:179:66,113:66:2368:113:4041:-309.993,0,-157.46	0/1:93:47,46:47:1679:46:1656:-121.333,0,-122.841	0/1:54:45,9:45:1616:9:324:-13.2502,0,-127.914	0/1:196:142,54:142:5085:54:1936:-115.515,0,-397.421	0/1:267:174,92:174:6212:92:3304:-217.148,0,-474.039	0/1:50:36,14:36:1273:14:498:-30.1035,0,-98.5485	0/1:202:121,81:121:4333:81:2908:-201.147,0,-328.259	0/1:110:65,45:65:2336:45:1620:-112.977,0,-176.813	0/1:95:62,33:62:2212:33:1173:-77.2777,0,-169.942	0/1:92:58,34:58:2075:34:1224:-82.7723,0,-158.366	0/1:122:96,26:96:3444:26:926:-46.9321,0,-272.53	0/1:77:31,46:31:1116:46:1637:-124.437,0,-77.2877	0/1:127:63,63:63:2237:63:2268:-166.095,0,-162.372	0/1:146:79,67:79:2840:67:2403:-172.573,0,-209.226	0/1:65:26,39:26:917:39:1404:-107.092,0,-62.4038	0/1:52:10,42:10:356:42:1512:-120.721,0,-16.5607	0/1:185:136,49:136:4880:49:1760:-102.993,0,-382.892	0/1:203:126,77:126:4511:77:2760:-187.532,0,-343.032	0/1:108:79,29:79:2813:29:1025:-60.0495,0,-220.705	0/1:97:82,15:82:2910:15:529:-18.736,0,-232.436	0/1:132:92,40:92:3273:40:1432:-89.4416,0,-254.331	0/1:81:57,24:57:2032:24:864:-53.6767,0,-157.999	0/1:414:164,250:164:5822:250:8919:-678.067,0,-397.969	0/1:305:247,58:247:8788:58:2088:-96.3756,0,-696.705	0/1:78:55,23:55:1972:23:828:-51.3638,0,-153.786	0/1:333:264,69:264:9447:69:2470:-122.309,0,-748.461	0/1:222:163,59:163:5840:59:2120:-124.24,0,-457.421	0/1:212:136,76:136:4853:76:2728:-181.944,0,-372.154	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6112	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6335	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.0979	0/1:16:14,2:14:496:2:72:-2.02024,0,-39.9327	0/1:8:7,1:7:237:1:36:-1.19004,0,-19.1611	0/1:302:112,190:112:4028:190:6818:-522.778,0,-271.274	0/1:323:116,207:116:4148:207:7408:-569.531,0,-274.678	0/1:114:70,44:70:2508:44:1584:-108.534,0,-188.715	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.92504	0/1:210:157,53:157:5600:53:1908:-108.781,0,-439.213	0/1:63:39,24:39:1400:24:864:-59.1177,0,-107.147	0/1:205:152,53:152:5432:53:1904:-109.927,0,-425.379	0/1:127:90,37:90:3232:37:1328:-81.5914,0,-252.147	0/1:115:58,57:58:2072:57:2044:-149.613,0,-151.525	0/1:138:81,57:81:2896:57:2030:-141.43,0,-218.776	0/1:203:61,142:61:2179:142:5090:-397.134,0,-132.123	0/1:400:300,100:300:10719:100:3561:-200.286,0,-838.418	0/1:214:128,86:128:4571:86:3081:-213.096,0,-343.378	0/1:170:63,107:63:2222:107:3844:-294.98,0,-148.709	0/1:247:144,103:144:5172:103:3704:-259.206,0,-389.919	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3729	0/1:216:110,106:110:3948:106:3812:-278.253,0,-286.697	0/1:73:37,36:37:1328:36:1296:-94.9687,0,-97.7603	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.1778	0/1:136:94,42:94:3359:42:1504:-94.7145,0,-260.103	0/1:37:18,19:18:648:19:676:-50.0299,0,-47.427	0/1:27:11,16:11:396:16:576:-44.0472,0,-27.8455	0/1:18:16,2:16:572:2:72:-1.41818,0,-46.2917	0/1:119:74,45:74:2648:45:1620:-110.267,0,-201.766	0/1:140:90,50:90:3236:50:1796:-119.778,0,-248.989	0/1:5:1,4:1:36:4:144:-11.8085,0,-1.99755	0/1:303:195,108:195:6961:108:3861:-256.471,0,-534.948	0/1:321:278,43:278:9916:43:1522:-40.6401,0,-794.416	0/1:68:46,22:46:1656:22:792:-51.1356,0,-128.214	0/1:142:113,29:113:4052:29:1044:-51.5285,0,-321.098	0/1:216:78,138:78:2800:138:4945:-380.176,0,-185.699	0/1:191:166,25:166:5919:25:900:-23.8243,0,-474.602	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.2786	0/1:122:92,29:92:3300:29:1044:-57.4964,0,-257.879	0/1:154:134,20:134:4791:20:716:-18.4091,0,-384.258	0/1:24:18,6:18:644:6:216:-12.5658,0,-51.0409	0/1:152:98,54:98:3505:54:1925:-127.768,0,-265.931	0/1:94:55,39:55:1968:39:1392:-97.2816,0,-147.905	0/1:239:167,72:167:5933:72:2583:-160.773,0,-457.755	0/1:189:61,128:61:2188:128:4587:-356.099,0,-139.287	0/1:162:126,36:126:4528:36:1296:-68.1771,0,-356.106	0/1:123:40,83:40:1436:83:2964:-229.965,0,-91.168	0/1:21:13,8:13:468:8:278:-19.0339,0,-36.0318	0/1:119:42,77:42:1504:77:2760:-212.819,0,-99.298	0/1:135:95,40:95:3393:40:1425:-87.9062,0,-261.974	0/1:340:215,123:215:7701:123:4394:-293.584,0,-588.345	0/1:134:51,83:51:1824:83:2959:-226.204,0,-123.794	0/1:125:89,36:89:3196:36:1288:-78.5948,0,-249.62	0/1:149:66,83:66:2376:83:2980:-223.578,0,-168.46	0/1:199:125,74:125:4465:74:2660:-179.74,0,-341.538	0/1:68:51,17:51:1832:17:608:-34.582,0,-144.085	0/1:107:28,79:28:1008:79:2832:-222.908,0,-58.3149	0/1:114:48,66:48:1716:66:2368:-179.061,0,-119.584	0/1:46:24,22:24:860:22:788:-57.3974,0,-63.6792	0/1:93:65,28:65:2324:28:1008:-63.0406,0,-180.913	0/1:86:70,16:70:2503:16:572:-25.9248,0,-199.357	0/1:145:104,41:104:3720:41:1463:-88.3151,0,-289.814	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chr05	19596769	.	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chr05	19794406	.	A	T	100850	PASS	AB=0.542516;ABP=43.8171;AC=135;AF=0.758427;AN=178;AO=4697;CIGAR=1X;DP=5893;DPB=5893;DPRA=0;EPP=10115.7;EPPR=2505.28;GTI=2;LEN=1;MEANALT=1.04494;MQM=59.9019;MQMR=59.9279;NS=89;NUMALT=1;ODDS=0.708745;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167926;QR=42738;RO=1192;RPL=4687;RPP=10115.7;RPPR=2505.28;RPR=10;RUN=1;SAF=0;SAP=10202.4;SAR=4697;SRF=0;SRP=2591.41;SRR=1192;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:10,22:10:351:22:792:-61.9645,0,-22.2919	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:104:44,60:44:1572:60:2142:-161.716,0,-110.464	1/1:149:0,149:0:0:149:5322:-479.1,-44.8535,0	1/1:53:0,53:0:0:53:1885:-169.927,-15.9546,0	1/1:18:0,18:0:0:18:648:-58.6355,-5.41854,0	0/1:38:18,20:18:639:20:720:-53.6873,0,-46.3991	1/1:64:0,63:0:0:63:2249:-202.312,-18.9649,0	0/1:49:18,31:18:648:31:1101:-84.603,0,-43.9014	1/1:81:0,81:0:0:81:2882:-259.505,-24.3834,0	1/1:35:0,34:0:0:34:1220:-109.747,-10.235,0	0/1:93:41,52:41:1472:52:1872:-140.747,0,-104.78	0/1:57:28,29:28:1008:29:1044:-77.1157,0,-73.8776	0/1:38:18,20:18:644:20:720:-53.6896,0,-46.8515	1/1:72:0,72:0:0:72:2580:-232.363,-21.6742,0	1/1:52:1,51:1:36:51:1832:-161.563,-12.0553,0	1/1:32:0,32:0:0:32:1136:-102.549,-9.63296,0	1/1:16:0,16:0:0:16:559:-50.637,-4.81648,0	1/1:26:0,25:0:0:25:896:-80.6006,-7.52575,0	0/1:92:44,48:44:1576:48:1713:-126.759,0,-114.437	1/1:107:0,107:0:0:107:3805:-342.598,-32.2102,0	0/1:66:37,29:37:1332:29:1044:-74.4068,0,-99.9437	0/1:75:32,43:32:1139:43:1542:-116.409,0,-80.2411	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:172:0,172:0:0:172:6131:-551.397,-51.7772,0	0/1:124:44,80:44:1580:80:2875:-221.468,0,-105.164	0/1:33:17,16:17:597:16:576:-42.241,0,-44.1221	0/1:229:94,135:94:3376:135:4808:-363.937,0,-235.119	0/1:83:42,41:42:1500:41:1472:-107.791,0,-110.309	1/1:94:0,94:0:0:94:3354:-301.967,-28.2968,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:161:1,160:1:36:160:5748:-513.832,-44.8676,0	1/1:85:0,85:0:0:85:3045:-274.278,-25.5876,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	.:.:.:.:.:.:.:.	0/1:28:12,16:12:428:16:572:-43.3846,0,-30.43	0/1:41:26,15:26:936:15:540:-36.5897,0,-72.2172	0/1:88:27,61:27:964:61:2184:-170.335,0,-60.5715	0/1:43:17,26:17:604:26:932:-71.2546,0,-41.7463	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:82:0,82:0:0:82:2937:-264.494,-24.6845,0	1/1:86:0,86:0:0:86:3054:-275.087,-25.8886,0	0/1:84:31,53:31:1108:53:1900:-145.989,0,-74.5167	1/1:66:0,66:0:0:66:2338:-210.676,-19.868,0	1/1:103:0,103:0:0:103:3693:-332.568,-31.0061,0	1/1:43:0,43:0:0:43:1532:-138.172,-12.9443,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:100:0,100:0:0:100:3590:-323.301,-30.103,0	1/1:28:0,28:0:0:28:989:-89.322,-8.42884,0	.:.:.:.:.:.:.:.	0/1:92:40,52:40:1436:52:1860:-139.985,0,-101.843	1/1:16:1,15:1:36:15:540:-45.3359,-1.21821,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:56:0,56:0:0:56:2012:-181.349,-16.8577,0	0/1:107:47,60:47:1680:60:2160:-162.456,0,-119.277	.:.:.:.:.:.:.:.	0/1:159:81,78:81:2904:78:2789:-203.385,0,-213.732	0/1:79:35,44:35:1260:44:1565:-117.358,0,-89.9241	0/1:40:13,26:13:468:26:921:-71.1443,0,-30.3971	0/1:63:25,38:25:900:38:1356:-103.375,0,-62.3561	1/1:133:1,132:1:36:132:4725:-421.809,-36.4387,0	0/1:83:52,31:52:1872:31:1112:-75.4059,0,-143.774	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:23:8,15:8:288:15:540:-42.0046,0,-19.315	0/1:32:13,19:13:468:19:684:-52.2574,0,-32.8267	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:76:0,76:0:0:76:2717:-244.772,-22.8783,0	1/1:88:0,88:0:0:88:3151:-283.811,-26.4906,0	1/1:121:0,121:0:0:121:4280:-385.375,-36.4246,0	0/1:65:24,41:24:864:41:1461:-112.217,0,-58.5156	1/1:89:0,89:0:0:89:3126:-281.559,-26.7917,0	0/1:10:6,4:6:216:4:144:-10.3017,0,-16.7802	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	0/1:58:24,34:24:864:34:1220:-92.6389,0,-60.6228	1/1:113:0,113:0:0:113:4025:-362.434,-34.0164,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:44:23,21:23:828:21:756:-55.1219,0,-61.5988	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:90:47,43:47:1688:43:1544:-112.16,0,-125.114	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	1/1:75:0,75:0:0:75:2677:-241.174,-22.5773,0	1/1:82:0,82:0:0:82:2952:-265.913,-24.6845,0	1/1:30:0,30:0:0:30:1065:-95.381,-9.0309,0	0/1:78:40,38:40:1432:38:1360:-99.2203,0,-105.697	0/1:82:59,23:59:2120:23:816:-49.0773,0,-166.384	1/1:135:0,135:0:0:135:4844:-436.11,-40.6391,0	1/1:92:0,92:0:0:92:3282:-295.511,-27.6948,0
chr05	19904372	.	AGTA	AGTT,TGTT	126980	PASS	AB=0.452544,0.545076;ABP=68.756,62.3262;AC=145,43;AF=0.771277,0.228723;AN=188;AO=4924,1849;CIGAR=3M1X,1X2M1X;DP=6790;DPB=6790;DPRA=0,1.13184;EPP=10695.3,4018.06;EPPR=3.0103;GTI=2;LEN=1,4;MEANALT=1.75532,2.19643;MQM=37.9194,33.6539;MQMR=59.5;NS=94;NUMALT=2;ODDS=0.131655;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=175860,65162;QR=57;RO=2;RPL=0,0;RPP=10695.3,4018.06;RPPR=7.35324;RPR=4924,1849;RUN=1,1;SAF=0,0;SAP=10695.3,4018.06;SAR=4924,1849;SRF=1;SRP=3.0103;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:45:0,26,19:0:0:26,19:923,647:-108.127,-42.477,-34.6502,-65.9446,0,-60.225	1/1:121:0,121,0:0:0:121,0:4296,0:-337.996,-36.4246,0,-337.996,-36.4246,-337.996	1/1:108:0,107,1:0:0:107,1:3812,35:-306.401,-32.2102,0,-304.109,-29.6305,-303.808	1/1:188:0,187,0:0:0:187,0:6695,0:-572.541,-56.2926,0,-572.541,-56.2926,-572.541	1/2:40:0,28,12:0:0:28,12:1004,431:-106.254,-30.143,-21.7142,-76.4288,0,-72.8164	1/2:48:0,19,29:0:0:19,29:680,1003:-117.283,-67.6811,-61.9615,-49.9129,0,-41.1831	1/2:125:0,54,71:0:0:54,71:1924,2471:-324.665,-177.516,-161.26,-147.474,0,-126.101	1/2:107:0,56,51:0:0:56,51:1989,1819:-264.981,-120.326,-103.468,-144.962,0,-129.61	1/1:39:0,39,0:0:0:39,0:1378,0:-111.138,-11.7402,0,-111.138,-11.7402,-111.138	1/1:73:0,73,0:0:0:73,0:2608,0:-223.298,-21.9752,0,-223.298,-21.9752,-223.298	1/2:18:0,11,7:0:0:11,7:392,250:-49.1954,-18.582,-15.2707,-30.9442,0,-28.837	1/2:24:0,13,11:0:0:13,11:455,395:-58.6569,-25.5449,-21.6315,-33.4133,0,-30.1019	1/1:36:0,36,0:0:0:36,0:1261,0:-102.052,-10.8371,0,-102.052,-10.8371,-102.052	1/1:31:0,31,0:0:0:31,0:1108,0:-91.0835,-9.33193,0,-91.0835,-9.33193,-91.0835	1/1:47:0,47,0:0:0:47,0:1676,0:-143.498,-14.1484,0,-143.498,-14.1484,-143.498	1/2:28:0,15,13:0:0:15,13:540,465:-71.4293,-31.9789,-27.4634,-39.7645,0,-35.8511	1/2:24:0,7,17:0:0:7,17:248,600:-58.1971,-40.0455,-37.9383,-18.4648,0,-13.3473	1/1:36:0,36,0:0:0:36,0:1279,0:-102.79,-10.8371,0,-102.79,-10.8371,-102.79	1/2:20:0,10,10:0:0:10,10:360,354:-49.2067,-23.2946,-20.2843,-26.2173,0,-23.207	1/2:209:0,104,104:0:0:104,104:3732,3673:-553.352,-265.303,-233.996,-288.121,0,-256.814	1/2:108:0,43,64:0:0:43,64:1535,2249:-268.819,-152.77,-139.826,-116.135,0,-96.8689	1/2:153:0,64,89:0:0:64,89:2279,3152:-417.508,-238.519,-219.253,-179.328,0,-152.536	1/1:54:0,52,1:0:0:52,1:1847,36:-157.74,-15.6536,0,-155.12,-13.033,-154.819	1/1:83:0,81,1:0:0:81,1:2912,36:-244.146,-24.3834,0,-241.636,-21.8768,-241.335	1/1:51:0,50,0:0:0:50,0:1796,0:-148.688,-15.0515,0,-148.688,-15.0515,-148.688	1/1:118:0,115,2:0:0:115,2:4100,72:-355.57,-34.6185,0,-350.074,-29.0498,-349.472	1/2:181:0,65,116:0:0:65,116:2318,4074:-453.862,-280.658,-261.091,-173.523,0,-138.604	1/2:18:0,8,10:0:0:8,10:288,358:-47.3438,-25.3493,-22.9411,-22.3212,0,-19.3109	1/1:175:0,175,0:0:0:175,0:6264,0:-540.744,-52.6803,0,-540.744,-52.6803,-540.744	1/2:69:0,35,34:0:0:35,34:1256,1189:-174.107,-83.8811,-73.3451,-90.5393,0,-80.3043	1/2:77:0,27,50:0:0:27,50:964,1724:-200.059,-125.835,-117.708,-74.5534,0,-59.5019	1/1:16:0,15,1:0:0:15,1:540,36:-45.5489,-4.51545,0,-43.0402,-1.69284,-42.7392	1/2:28:0,23,5:0:0:23,5:828,179:-75.4304,-12.8305,-5.90678,-62.9159,0,-61.4108	1/1:68:0,68,0:0:0:68,0:2440,0:-196.594,-20.47,0,-196.594,-20.47,-196.594	1/1:13:0,12,1:0:0:12,1:432,36:-34.8606,-3.61236,0,-32.4808,-0.932638,-32.1798	1/1:69:0,69,0:0:0:69,0:2476,0:-200.673,-20.7711,0,-200.673,-20.7711,-200.673	1/1:64:0,64,0:0:0:64,0:2304,0:-202.666,-19.2659,0,-202.666,-19.2659,-202.666	1/2:184:0,80,103:0:0:80,103:2864,3647:-468.251,-251.539,-227.457,-216.845,0,-185.839	1/1:23:0,22,0:0:0:22,0:784,0:-61.3973,-6.62266,0,-61.3973,-6.62266,-61.3973	1/1:23:0,23,0:0:0:23,0:828,0:-69.3413,-6.92369,0,-69.3413,-6.92369,-69.3413	1/1:122:0,120,2:0:0:120,2:4292,70:-357.158,-36.1236,0,-352.323,-30.9856,-351.721	1/2:19:0,8,11:0:0:8,11:288,384:-48.1526,-26.1892,-23.781,-22.2834,0,-18.9721	1/2:174:0,76,98:0:0:76,98:2713,3423:-443.948,-239.9,-217.022,-204.368,0,-174.867	1/2:40:0,20,20:0:0:20,20:716,720:-108.156,-52.5131,-46.4925,-55.9754,0,-49.9548	1/1:30:0,30,0:0:0:30,0:1051,0:-90.586,-9.0309,0,-90.586,-9.0309,-90.586	1/1:67:0,67,0:0:0:67,0:2400,0:-209.617,-20.169,0,-209.617,-20.169,-209.617	1/1:120:0,119,0:0:0:119,0:4255,0:-340.737,-35.8226,0,-340.737,-35.8226,-340.737	1/2:138:0,65,73:0:0:65,73:2320,2564:-365.068,-184.505,-164.939,-180.892,0,-158.917	1/2:96:0,27,69:0:0:27,69:960,2440:-248.508,-174.554,-166.426,-74.2854,0,-53.5143	1/2:110:0,59,51:0:0:59,51:2111,1812:-297.287,-132.676,-114.915,-164.943,0,-149.59	1/2:127:0,72,55:0:0:72,55:2588,1951:-352.797,-146.78,-125.106,-206.356,0,-189.799	1/2:35:0,31,4:0:0:31,4:1112,143:-95.657,-10.812,-1.48005,-85.1712,0,-83.9671	1/1:50:0,50,0:0:0:50,0:1784,0:-145.599,-15.0515,0,-145.599,-15.0515,-145.599	1/2:58:0,29,29:0:0:29,29:1032,1026:-159.209,-78.7565,-70.0267,-80.7904,0,-72.0605	1/1:41:0,41,0:0:0:41,0:1456,0:-117.476,-12.3422,0,-117.476,-12.3422,-117.476	1/1:129:0,129,0:0:0:129,0:4589,0:-384.078,-38.8329,0,-384.078,-38.8329,-384.078	1/2:37:0,11,26:0:0:11,26:391,9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chr05	19925821	.	C	G,T	175730	PASS	AB=0.530717,0.468742;ABP=33.2928,34.3694;AC=141,45;AF=0.758065,0.241935;AN=186;AO=6387,1743;CIGAR=1X,1X;DP=8138;DPB=8138;DPRA=0,1.04018;EPP=13828.8,3779.21;EPPR=7.35324;GTI=2;LEN=1,1;MEANALT=1.5914,2.01961;MQM=58.56,52.1893;MQMR=60;NS=93;NUMALT=2;ODDS=0.0627706;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=228132,62254;QR=72;RO=2;RPL=5,1;RPP=13828.8,3779.21;RPPR=7.35324;RPR=6382,1742;RUN=1,1;SAF=6387,1743;SAP=13872.2,3787.89;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:20:0,6,14:0:0:6,14:216,504:-58.6859,-41.0631,-39.2569,-17.9816,0,-13.7671	1/1:174:0,171,0:0:0:171,0:6094,0:-548.01,-51.4761,0,-548.01,-51.4761,-548.01	1/2:124:0,72,52:0:0:72,52:2588,1868:-362.945,-151.844,-130.17,-211.46,0,-195.806	1/1:160:0,159,0:0:0:159,0:5651,0:-508.217,-47.8638,0,-508.217,-47.8638,-508.217	1/1:37:0,37,0:0:0:37,0:1332,0:-120.139,-11.1381,0,-120.139,-11.1381,-120.139	1/1:57:0,57,0:0:0:57,0:2028,0:-182.759,-17.1587,0,-182.759,-17.1587,-182.759	1/2:126:0,66,60:0:0:66,60:2368,2134:-365.884,-172.8,-152.932,-193.44,0,-175.378	1/1:156:0,152,3:0:0:152,3:5415,104:-486.646,-45.7566,0,-478.193,-37.2834,-477.29	1/2:61:0,34,27:0:0:34,27:1202,964:-175.896,-78.0119,-67.7769,-98.2373,0,-90.1095	1/1:115:0,114,1:0:0:114,1:4062,36:-365.344,-34.3174,0,-362.406,-31.0202,-362.105	1/1:42:0,42,0:0:0:42,0:1499,0:-135.15,-12.6433,0,-135.15,-12.6433,-135.15	1/2:39:0,23,16:0:0:23,16:815,572:-113.174,-46.7869,-39.8632,-66.7428,0,-61.9263	1/2:46:0,25,21:0:0:25,21:900,747:-134.173,-60.7433,-53.2176,-73.7862,0,-67.4645	1/2:54:0,28,26:0:0:28,26:991,936:-156.943,-76.2438,-67.815,-81.0546,0,-73.2278	1/1:52:0,52,0:0:0:52,0:1872,0:-168.684,-15.6536,0,-168.684,-15.6536,-168.684	1/1:39:0,39,0:0:0:39,0:1391,0:-125.463,-11.7402,0,-125.463,-11.7402,-125.463	1/1:67:0,67,0:0:0:67,0:2383,0:-214.704,-20.169,0,-214.704,-20.169,-214.704	1/1:51:0,51,0:0:0:51,0:1828,0:-164.776,-15.3525,0,-164.776,-15.3525,-164.776	1/1:19:0,19,0:0:0:19,0:684,0:-61.8867,-5.71957,0,-61.8867,-5.71957,-61.8867	1/2:162:0,72,90:0:0:72,90:2576,3224:-468.322,-258.503,-236.829,-210.174,0,-183.081	1/1:125:0,125,0:0:0:125,0:4438,0:-399.249,-37.6288,0,-399.249,-37.6288,-399.249	1/2:167:0,82,85:0:0:82,85:2933,3044:-484.652,-245.646,-220.962,-239.361,0,-213.774	1/2:26:0,13,13:0:0:13,13:468,464:-75.8691,-37.6932,-33.7798,-38.5321,0,-34.6187	1/2:69:0,42,27:0:0:42,27:1504,957:-199.637,-77.0105,-64.3673,-122.979,0,-114.851	1/1:49:0,49,0:0:0:49,0:1756,0:-158.291,-14.7505,0,-158.291,-14.7505,-158.291	1/1:289:0,289,0:0:0:289,0:10341,0:-930.048,-86.9977,0,-930.048,-86.9977,-930.048	1/2:186:0,100,86:0:0:100,86:3542,3068:-535.784,-247.45,-217.347,-288.687,0,-262.798	1/2:15:0,8,7:0:0:8,7:288,252:-44.2763,-20.7805,-18.3722,-23.8545,0,-21.7473	1/2:167:0,81,86:0:0:81,86:2912,3046:-482.341,-244.869,-220.486,-237.826,0,-211.937	1/2:223:0,118,105:0:0:118,105:4231,3749:-645.653,-300.635,-265.114,-345.373,0,-313.765	1/1:87:0,87,0:0:0:87,0:3098,0:-278.976,-26.1896,0,-278.976,-26.1896,-278.976	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:4:0,4,0:0:0:4,0:144,0:-13.312,-1.20412,0,-13.312,-1.20412,-13.312	1/2:10:0,3,7:0:0:3,7:108,248:-28.9898,-20.1741,-19.271,-9.17208,0,-7.06487	1/1:11:0,11,0:0:0:11,0:392,0:-35.6164,-3.31133,0,-35.6164,-3.31133,-35.6164	1/1:4:0,4,0:0:0:4,0:140,0:-12.9427,-1.20412,0,-12.9427,-1.20412,-12.9427	1/1:159:0,158,0:0:0:158,0:5619,0:-505.27,-47.5627,0,-505.27,-47.5627,-505.27	1/1:150:0,150,0:0:0:150,0:5350,0:-481.521,-45.1545,0,-481.521,-45.1545,-481.521	1/1:45:0,45,0:0:0:45,0:1616,0:-145.718,-13.5464,0,-145.718,-13.5464,-145.718	.:.:.:.:.:.:.:.	1/2:123:0,76,47:0:0:76,47:2728,1680:-359.038,-136.543,-113.664,-222.852,0,-208.704	1/2:29:0,20,9:0:0:20,9:720,324:-85.2947,-26.5854,-20.5648,-59.0673,0,-56.3581	1/2:125:1,64,60:1:36:64,60:2285,2139:-354.782,-168.842,-152.513,-183.298,0,-168.174	1/2:46:0,25,21:0:0:25,21:884,756:-133.543,-61.566,-54.0402,-72.3328,0,-66.0111	1/1:47:0,47,0:0:0:47,0:1663,0:-149.932,-14.1484,0,-149.932,-14.1484,-149.932	1/1:105:0,105,0:0:0:105,0:3772,0:-339.502,-31.6082,0,-339.502,-31.6082,-339.502	1/1:80:0,80,0:0:0:80,0:2859,0:-257.505,-24.0824,0,-257.505,-24.0824,-257.505	1/2:143:0,73,70:0:0:73,70:2616,2508:-415.733,-202.481,-180.506,-213.607,0,-192.535	1/1:112:0,112,0:0:0:112,0:3980,0:-358.307,-33.7154,0,-358.307,-33.7154,-358.307	1/1:143:0,143,0:0:0:143,0:5097,0:-458.785,-43.0473,0,-458.785,-43.0473,-458.785	1/1:140:0,138,2:0:0:138,2:4952,72:-445.297,-41.5421,0,-439.444,-35.3299,-438.842	1/2:14:0,10,4:0:0:10,4:360,144:-41.3388,-11.9666,-8.95625,-29.7293,0,-28.5252	1/1:130:0,130,0:0:0:130,0:4646,0:-418.243,-39.1339,0,-418.243,-39.1339,-418.243	1/1:65:0,65,0:0:0:65,0:2328,0:-209.708,-19.567,0,-209.708,-19.567,-209.708	1/2:20:0,11,9:0:0:11,9:396,320:-58.3954,-26.0852,-22.7738,-32.6653,0,-29.956	1/2:124:0,72,52:0:0:72,52:2580,1852:-359.815,-149.46,-127.785,-210.71,0,-195.056	1/2:22:0,20,2:0:0:20,2:720,72:-64.9666,-6.23466,-0.214062,-59.0917,0,-58.4897	1/1:3:0,3,0:0:0:3,0:108,0:-10.0683,-0.90309,0,-10.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chr05	19994034	.	TACAAT	TACCAC,TACTAT	86121.5	PASS	AB=0.458816,0.527717;ABP=97.0902,45.6223;AC=94,94;AF=0.5,0.5;AN=188;AO=2947,3373;CIGAR=3M1X1M1X,3M1X2M;DP=6406;DPB=6405.83;DPRA=34.4301,0;EPP=6402.34,7327.39;EPPR=5.18177;GTI=2;LEN=6,1;MEANALT=2.76344,2.74468;MQM=23.3088,38.9701;MQMR=30;NS=94;NUMALT=2;ODDS=102.19;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=101585,119863;QR=32;RO=1;RPL=2947,3373;RPP=6402.34,7327.39;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=2947,3373;SAP=6402.34,7327.39;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,11,13:0:0:11,13:392,463:-54.8472,-34.7286,-31.4172,-20.3971,0,-16.4837	1/2:77:0,55,22:0:0:55,22:1899,777:-156.261,-57.9525,-41.3959,-98.6061,0,-91.9834	1/2:84:0,63,20:0:0:63,20:2143,716:-162.024,-53.0758,-34.1109,-108.997,0,-102.977	1/2:189:0,108,80:0:0:108,80:3773,2837:-407.534,-220.542,-188.031,-187.101,0,-163.018	1/2:29:0,13,16:0:0:13,16:449,559:-66.4244,-42.7881,-38.8747,-23.9136,0,-19.0971	1/2:33:0,11,22:0:0:11,22:368,792:-76.7226,-59.0279,-55.7166,-17.9464,0,-11.3237	1/2:124:1,72,49:1:32:72,49:2515,1755:-257.948,-134.305,-114.837,-121.794,0,-109.252	1/2:146:0,76,65:0:0:76,65:2582,2291:-306.985,-170.222,-147.344,-136.82,0,-117.254	1/2:55:0,11,40:0:0:11,40:356,1438:-126.513,-106.821,-103.509,-19.7007,0,-7.65949	1/2:63:0,42,20:0:0:42,20:1436,716:-127.549,-55.7427,-43.0995,-71.8516,0,-65.831	1/2:35:0,10,25:0:0:10,25:344,894:-86.9723,-69.9366,-66.9263,-17.293,0,-9.76723	1/2:46:0,14,32:0:0:14,32:487,1146:-109.855,-85.42,-81.2055,-24.6931,0,-15.0601	1/2:30:0,12,16:0:0:12,16:422,566:-63.1677,-41.9446,-38.3322,-21.249,0,-16.4325	1/2:62:0,30,32:0:0:30,32:1040,1121:-140.031,-85.5927,-76.5618,-54.7191,0,-45.0862	1/2:34:0,8,26:0:0:8,26:266,919:-85.5376,-72.0963,-69.6881,-13.6899,0,-5.86314	1/2:23:0,5,17:0:0:5,17:178,604:-55.2063,-46.0633,-44.5581,-9.19332,0,-4.07581	1/2:58:0,26,31:0:0:26,31:887,1101:-126.354,-81.9843,-74.1575,-44.4011,0,-35.0692	1/2:32:0,12,19:0:0:12,19:408,671:-70.7862,-49.2007,-45.5884,-21.6395,0,-15.9199	1/2:24:0,14,9:0:0:14,9:491,320:-49.2872,-23.8083,-19.5939,-25.4621,0,-22.7529	1/2:116:0,44,70:0:0:44,70:1519,2500:-269.647,-194.455,-181.21,-75.2758,0,-54.2037	1/2:90:0,31,57:0:0:31,57:1071,1994:-208.367,-151.999,-142.667,-56.3749,0,-39.2162	1/2:66:0,14,52:0:0:14,52:482,1859:-170.8,-148.315,-144.101,-22.7261,0,-7.07256	1/2:18:0,5,13:0:0:5,13:178,468:-45.5009,-36.7085,-35.2033,-9.05377,0,-5.14038	1/2:106:0,30,76:0:0:30,76:1042,2713:-261.744,-207.183,-198.152,-54.8253,0,-31.947	1/2:73:0,42,31:0:0:42,31:1420,1088:-157.809,-83.09,-70.4468,-75.0067,0,-65.6748	1/2:120:0,65,55:0:0:65,55:2247,1967:-267.585,-156.657,-137.09,-111.22,0,-94.6633	1/2:154:0,54,99:0:0:54,99:1879,3555:-369.773,-271.264,-255.008,-98.4725,0,-68.6705	1/2:16:0,6,10:0:0:6,10:211,354:-38.0681,-27.2144,-25.4083,-11.1252,0,-8.11486	1/2:288:0,145,137:0:0:145,137:4976,4907:-638.277,-389.74,-346.09,-248.589,0,-207.348	1/2:135:0,63,70:0:0:63,70:2180,2474:-301.313,-188.046,-169.081,-113.29,0,-92.2182	1/2:105:0,60,44:0:0:60,44:2086,1549:-225.385,-120.766,-102.704,-104.786,0,-91.541	1/2:4:0,2,1:0:0:2,1:64,36:-6.36178,-2.81719,-2.21513,-3.58452,0,-3.28349	1/2:36:0,26,10:0:0:26,10:874,356:-74.3915,-27.5576,-19.7308,-47.1414,0,-44.1311	1/2:5:0,3,2:0:0:3,2:106,72:-10.9321,-5.66609,-4.763,-5.55618,0,-4.95412	1/2:11:0,6,5:0:0:6,5:214,176:-24.2938,-13.3429,-11.5368,-11.2347,0,-9.72955	1/2:16:0,12,4:0:0:12,4:418,135:-32.2303,-10.3752,-6.76286,-22.1489,0,-20.9447	1/2:112:0,25,85:0:0:25,85:853,3017:-283.027,-239.802,-232.276,-43.2982,0,-17.7106	1/2:212:0,93,117:0:0:93,117:3225,4157:-486.691,-316.577,-288.581,-170.192,0,-134.972	1/2:30:0,15,14:0:0:15,14:507,498:-63.6361,-36.6923,-32.1769,-26.9999,0,-22.7855	1/2:3:0,1,2:0:0:1,2:36,72:-7.63572,-5.83438,-5.53335,-2.0725,0,-1.47044	1/2:62:0,33,26:0:0:33,26:1156,915:-131.622,-70.066,-60.132,-61.6489,0,-53.8222	1/2:17:0,8,9:0:0:8,9:275,311:-38.5931,-24.1732,-21.765,-14.6982,0,-11.989	1/2:81:0,30,50:0:0:30,50:1021,1763:-187.881,-133.793,-124.762,-54.1109,0,-39.0594	1/2:18:0,3,15:0:0:3,15:95,533:-46.7339,-41.686,-40.7829,-5.28886,0,-0.773408	1/2:51:0,23,28:0:0:23,28:779,962:-114.034,-75.2709,-68.3472,-39.0336,0,-30.6047	1/2:51:0,22,29:0:0:22,29:746,1025:-119.838,-81.7728,-75.1501,-38.3423,0,-29.6124	1/2:130:0,60,70:0:0:60,70:2046,2460:-289.783,-182.845,-164.783,-107.212,0,-86.1397	1/2:194:0,92,102:0:0:92,102:3156,3627:-439.621,-282.506,-254.812,-157.394,0,-126.689	1/2:73:0,33,38:0:0:33,38:1145,1342:-161.477,-104.368,-94.4344,-57.1016,0,-45.6625	1/2:50:0,28,22:0:0:28,22:930,785:-109.045,-61.2071,-52.7783,-48.127,0,-41.5044	1/2:219:0,101,118:0:0:101,118:3522,4199:-507.555,-333.114,-302.71,-174.722,0,-139.2	1/2:10:0,8,2:0:0:8,2:267,72:-19.6128,-5.96147,-3.55323,-13.9725,0,-13.3705	1/2:97:0,68,28:0:0:68,28:2371,980:-196.858,-72.5121,-52.0421,-124.44,0,-116.011	1/2:14:0,9,4:0:0:9,4:320,139:-26.6101,-10.9326,-8.22337,-15.757,0,-14.5529	1/2:7:0,4,3:0:0:4,3:131,108:-15.3234,-8.33418,-7.13006,-7.27596,0,-6.37287	1/2:60:0,33,25:0:0:33,25:1140,877:-125.499,-66.7186,-56.7846,-58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chr05	20060341	.	A	T	7314.45	PASS	AB=0.275676;ABP=3411.82;AC=72;AF=0.387097;AN=186;AO=2367;CIGAR=1X;DP=10149;DPB=10149;DPRA=22.2835;EPP=5065.01;EPPR=16897.1;GTI=39;LEN=1;MEANALT=1.01099;MQM=26.2011;MQMR=17.3869;NS=93;NUMALT=1;ODDS=0.473233;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84439;QR=279098;RO=7780;RPL=9;RPP=5065.01;RPPR=16897.1;RPR=2358;RUN=1;SAF=2367;SAP=5142.89;SAR=0;SRF=7780;SRP=16897.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:17,19:17:612:19:684:-25.9395,0,-17.4858	0/0:121:113,8:113:4068:8:282:0,-18.8132,-155.177	0/1:137:85,52:85:3032:52:1859:-77.8707,0,-82.2453	0/1:333:194,139:194:6949:139:4948:-214.232,0,-218.121	0/1:84:72,12:72:2588:12:432:-0.347502,0,-97.6254	0/0:94:89,5:89:3192:5:180:0,-16.1133,-133.226	0/1:106:81,25:81:2908:25:900:-21.7026,0,-100.634	0/1:140:108,32:108:3888:32:1148:-32.5411,0,-122.446	0/1:79:64,15:64:2300:15:540:-10.744,0,-80.8888	0/1:165:132,33:132:4740:33:1169:-26.711,0,-155.929	0/1:51:45,6:45:1620:6:216:-0.338621,0,-52.3582	0/1:84:66,18:66:2359:18:648:-7.42915,0,-83.7313	0/0:72:65,7:65:2325:7:248:0,-4.78504,-74.1706	0/0:89:82,7:82:2944:7:252:0,-8.89445,-105.832	0/0:95:88,7:88:3164:7:252:0,-9.66702,-111.98	0/1:64:51,13:51:1832:13:468:-9.77656,0,-58.472	0/0:109:98,11:98:3524:11:387:0,-6.71799,-118.485	0/0:61:56,5:56:1993:5:176:0,-6.38846,-73.2403	0/0:20:17,3:17:612:3:104:0,-0.145508,-21.5088	0/1:156:104,52:104:3729:52:1830:-61.4636,0,-120.071	0/1:163:128,35:128:4592:35:1252:-20.1973,0,-161.575	0/1:174:150,22:150:5373:22:783:-8.74854,0,-164.396	0/1:109:56,53:56:2016:53:1879:-80.6088,0,-54.1857	0/1:121:97,24:97:3488:24:851:-19.0875,0,-119.332	0/1:71:55,16:55:1976:16:568:-16.1374,0,-73.3463	0/0:279:251,28:251:9012:28:996:0,-8.17747,-276.447	0/1:250:173,77:173:6186:77:2735:-91.3355,0,-216.616	0/1:69:54,15:54:1944:15:538:-9.49781,0,-66.088	0/1:269:218,51:218:7820:51:1828:-60.7953,0,-236.149	0/1:145:92,53:92:3308:53:1908:-77.2053,0,-106.792	0/1:184:145,39:145:5185:39:1385:-42.7622,0,-185.955	0/1:4:2,2:2:72:2:72:-4.15593,0,-1.92034	0/1:16:11,5:11:396:5:176:-5.04432,0,-14.8557	0/1:4:3,1:3:108:1:36:-1.44448,0,-4.09216	0/0:6:6,0:6:216:0:0:0,-1.80618,-11.8803	1/1:7:1,6:1:36:6:212:-11.1016,-0.215683,0	0/0:353:322,31:322:11564:31:1107:0,-23.6948,-366.943	0/1:181:132,49:132:4744:49:1742:-47.8211,0,-161.988	0/1:30:24,6:24:860:6:216:-1.00005,0,-28.8841	.:.:.:.:.:.:.:.	0/1:106:80,26:80:2864:26:928:-34.0811,0,-81.5351	0/0:24:23,1:23:828:1:36:0,-6.12598,-32.866	0/1:147:100,47:100:3577:47:1661:-58.4562,0,-114.246	0/0:107:95,12:95:3404:12:432:0,-3.9676,-126.104	0/0:110:101,9:101:3624:9:324:0,-9.80902,-125.417	0/1:59:24,35:24:864:35:1230:-66.8996,0,-21.4212	0/1:132:104,28:104:3713:28:980:-21.1816,0,-131.947	0/0:207:185,22:185:6613:22:784:0,-4.395,-241.627	0/1:123:90,33:90:3232:33:1165:-37.0724,0,-111.813	0/1:110:64,46:64:2300:46:1637:-67.8896,0,-71.9393	0/1:137:98,39:98:3500:39:1394:-55.2597,0,-101.375	0/1:4:1,3:1:36:3:108:-6.84393,0,-0.687407	0/1:107:56,51:56:2012:51:1828:-60.2362,0,-60.8415	0/1:34:18,16:18:644:16:576:-31.0242,0,-16.8326	0/1:22:17,5:17:612:5:180:-5.5609,0,-21.1639	0/1:90:63,27:63:2249:27:964:-38.502,0,-69.5837	0/1:61:41,20:41:1476:20:720:-30.2814,0,-44.9007	0/1:6:4,2:4:144:2:72:-3.70556,0,-3.45438	0/1:20:12,8:12:417:8:284:-10.9422,0,-14.4943	0/1:56:42,14:42:1504:14:500:-15.6867,0,-50.8479	0/1:167:140,27:140:5028:27:955:-20.7855,0,-150.647	0/0:4:4,0:4:144:0:0:0,-1.20412,-7.86675	0/1:433:244,189:244:8756:189:6771:-338.329,0,-246.334	0/1:199:164,35:164:5892:35:1256:-30.5278,0,-189.473	0/1:67:47,20:47:1673:20:720:-25.3905,0,-57.2552	0/1:103:80,23:80:2872:23:809:-29.7293,0,-100.333	0/1:155:110,45:110:3944:45:1616:-56.5914,0,-138.047	0/1:80:71,9:71:2552:9:320:-0.0917432,0,-79.1877	0/1:28:21,7:21:756:7:248:-7.31101,0,-29.3125	0/1:55:38,17:38:1364:17:600:-12.2132,0,-45.2423	0/1:135:119,16:119:4272:16:576:-3.88813,0,-124.787	0/1:15:11,4:11:396:4:144:-6.51333,0,-14.0088	0/1:95:75,20:75:2685:20:707:-18.7261,0,-86.9751	0/0:104:94,10:94:3365:10:360:0,-8.61523,-115.261	0/1:109:80,29:80:2872:29:1031:-40.7111,0,-90.2362	0/1:303:217,86:217:7796:86:3076:-126.108,0,-248.05	0/1:82:61,21:61:2192:21:744:-12.5628,0,-82.5518	0/1:128:80,48:80:2876:48:1720:-44.6617,0,-83.5367	0/1:15:7,8:7:252:8:288:-13.3141,0,-8.81338	0/1:111:69,42:69:2480:42:1508:-51.9964,0,-80.1772	0/1:151:109,42:109:3905:42:1493:-16.3964,0,-140.792	0/1:238:200,38:200:7147:38:1368:-28.7787,0,-250.014	0/0:188:175,13:175:6284:13:468:0,-21.7106,-231.257	0/0:48:43,5:43:1540:5:180:0,-5.85047,-54.4667	0/0:71:65,6:65:2340:6:216:0,-7.63388,-77.4803	0/0:134:117,17:117:4200:17:612:0,-0.326782,-133.606	0/0:47:43,4:43:1548:4:144:0,-5.87445,-60.653	0/1:131:100,31:100:3600:31:1112:-17.3387,0,-123.373	0/1:79:63,16:63:2264:16:576:-1.34961,0,-84.3312	0/1:24:18,6:18:644:6:216:-4.86895,0,-19.2202	0/1:80:62,18:62:2228:18:648:-8.64091,0,-71.8871	0/1:59:41,18:41:1476:18:635:-17.0403,0,-39.1923	0/1:149:100,49:100:3600:49:1720:-79.8046,0,-90.3206	0/1:169:147,22:147:5267:22:792:-7.9781,0,-170.29
chr05	20060379	.	C	T	20776	PASS	AB=0.7255;ABP=3491.4;AC=111;AF=0.596774;AN=186;AO=7512;CIGAR=1X;DP=9855;DPB=9855;DPRA=0;EPP=16315.1;EPPR=5090.77;GTI=39;LEN=1;MEANALT=1;MQM=16.9714;MQMR=26.4417;NS=93;NUMALT=1;ODDS=0.0684754;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=267060;QR=82961;RO=2343;RPL=7512;RPP=16315.1;RPPR=5090.77;RPR=0;RUN=1;SAF=7512;SAP=16315.1;SAR=0;SRF=2343;SRP=5090.77;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:19,17:19:672:17:604:-17.4631,0,-25.8155	1/1:113:7,106:7:248:106:3758:-143.935,-18.4532,0	0/1:134:52,82:52:1831:82:2932:-77.044,0,-79.3839	0/1:324:135,189:135:4792:189:6678:-206.81,0,-210.085	0/1:82:12,70:12:428:70:2482:-90.6467,0,-0.86115	1/1:92:5,87:5:180:87:3103:-129.751,-15.5112,0	0/1:104:25,79:25:896:79:2832:-96.472,0,-22.2933	0/1:135:30,105:30:1059:105:3743:-117.35,0,-30.5652	0/1:81:16,65:16:563:65:2306:-80.5739,0,-12.0745	0/1:163:34,129:34:1205:129:4576:-146.734,0,-29.5689	0/1:46:6,40:6:207:40:1406:-41.7756,0,-1.70683	0/1:82:19,63:19:684:63:2214:-79.4616,0,-10.4183	1/1:71:7,64:7:252:64:2274:-72.5118,-4.42209,0	1/1:89:7,82:7:252:82:2906:-105.7,-8.89445,0	1/1:96:7,89:7:243:89:3182:-114.055,-10.3576,0	0/1:64:13,51:13:455:51:1820:-58.4459,0,-9.46693	1/1:107:10,97:10:356:97:3462:-118.28,-8.33492,0	1/1:59:4,55:4:144:55:1972:-73.3704,-8.12902,0	0/1:19:3,16:3:104:16:576:-18.5728,0,-0.155521	0/1:154:50,104:50:1773:104:3687:-118.038,0,-59.2526	0/1:158:35,123:35:1209:123:4362:-152.605,0,-21.8089	0/1:168:24,144:24:837:144:5129:-153.517,0,-13.5545	0/1:104:49,55:49:1737:55:1968:-53.9544,0,-76.3442	0/1:121:24,97:24:839:97:3472:-119.748,0,-19.0045	0/1:71:16,55:16:572:55:1940:-70.3876,0,-16.0573	1/1:274:28,246:28:996:246:8788:-256.479,-5.00127,0	0/1:236:72,164:72:2553:164:5870:-196.629,0,-87.5521	0/1:64:13,51:13:456:51:1799:-60.0322,0,-9.26183	0/1:261:50,211:50:1767:211:7576:-224.645,0,-59.321	0/1:144:55,89:55:1951:89:3181:-99.5225,0,-82.5695	0/1:174:38,136:38:1333:136:4845:-165.07,0,-44.994	0/1:4:2,2:2:72:2:72:-1.92034,0,-4.15593	0/1:13:4,9:4:140:9:324:-9.79623,0,-3.3088	0/1:4:1,3:1:36:3:108:-4.09216,0,-1.44448	1/1:5:0,5:0:0:5:180:-8.70102,-1.50515,0	0/0:7:6,1:6:186:1:27:0,-0.270353,-10.0354	1/1:338:30,308:30:1063:308:10922:-342.84,-22.1217,0	0/1:180:54,126:54:1918:126:4481:-148.607,0,-58.417	0/1:30:6,24:6:216:24:856:-28.8651,0,-1.00005	.:.:.:.:.:.:.:.	0/1:102:25,77:25:870:77:2729:-74.1941,0,-31.4771	1/1:23:1,22:1:36:22:770:-29.2946,-4.45678,0	0/1:146:49,97:49:1744:97:3458:-107.637,0,-64.335	0/1:102:14,88:14:504:88:3116:-108.095,0,-2.76363	1/1:109:10,99:10:360:99:3504:-117.062,-6.82392,0	0/1:57:34,23:34:1199:23:816:-19.0246,0,-65.5388	0/1:127:27,100:27:940:100:3556:-125.76,0,-21.2627	0/1:202:24,178:24:851:178:6344:-220.704,0,-2.34617	0/1:121:33,88:33:1166:88:3095:-105.922,0,-38.6062	0/1:107:45,62:45:1608:62:2232:-68.2273,0,-66.8736	0/1:135:38,97:38:1364:97:3469:-98.3437,0,-54.8036	0/1:4:3,1:3:108:1:36:-0.687407,0,-6.84393	0/1:106:54,52:54:1910:52:1857:-51.4307,0,-67.0846	0/1:34:17,17:17:603:17:603:-15.1773,0,-32.7704	0/1:22:5,17:5:180:17:612:-21.1639,0,-5.5609	0/1:88:26,62:26:916:62:2215:-68.4888,0,-37.5066	0/1:58:19,39:19:680:39:1391:-41.1233,0,-29.3096	0/1:6:2,4:2:63:4:144:-3.45438,0,-3.38903	0/1:19:8,11:8:279:11:396:-11.8522,0,-10.9299	0/1:55:14,41:14:496:41:1459:-48.0399,0,-15.8726	0/1:164:27,137:27:959:137:4846:-142.652,0,-21.7262	1/1:3:0,3:0:0:3:108:-4.74226,-0.90309,0	0/1:424:189,235:189:6689:235:8346:-230.706,0,-338.991	0/1:199:36,163:36:1280:163:5764:-186.578,0,-34.525	0/1:62:20,42:20:716:42:1500:-49.0768,0,-25.8691	0/1:100:22,78:22:788:78:2772:-93.7351,0,-28.659	0/1:148:44,104:44:1551:104:3695:-125.261,0,-55.5088	0/1:74:9,65:9:316:65:2315:-68.0144,0,-1.77538	0/1:26:5,21:5:180:21:705:-29.1981,0,-4.99151	0/1:55:18,37:18:629:37:1306:-42.0545,0,-14.6376	0/1:125:18,107:18:648:107:3794:-98.712,0,-12.5216	0/1:16:5,11:5:176:11:396:-13.7078,0,-8.46566	0/1:91:20,71:20:692:71:2521:-78.0428,0,-19.3463	1/1:101:10,91:10:356:91:3250:-105.89,-6.3634,0	0/1:108:29,79:29:1023:79:2811:-87.5823,0,-40.8363	0/1:297:84,213:84:2990:213:7614:-237.725,0,-125.239	0/1:79:22,57:22:779:57:2037:-75.2625,0,-15.21	0/1:123:46,77:46:1624:77:2751:-78.9725,0,-43.7363	0/1:15:8,7:8:276:7:248:-8.80195,0,-13.1287	0/1:104:39,65:39:1380:65:2289:-70.6339,0,-49.1198	0/1:146:41,105:41:1464:105:3730:-132.056,0,-17.3074	0/1:232:39,193:39:1380:193:6867:-236.552,0,-32.5728	1/1:181:13,168:13:464:168:5948:-213.043,-19.7255,0	1/1:46:4,42:4:144:42:1482:-53.5453,-7.04181,0	1/1:69:6,63:6:201:63:2236:-71.2967,-7.21685,0	1/1:130:16,114:16:572:114:4054:-129.715,-1.29354,0	1/1:44:4,40:4:144:40:1409:-54.49,-4.97136,0	0/1:125:29,96:29:1021:96:3411:-115.756,0,-14.6824	0/1:79:16,63:16:572:63:2230:-82.5245,0,-1.34827	0/1:23:6,17:6:216:17:612:-18.2685,0,-5.16998	0/1:75:17,58:17:608:58:2029:-64.3805,0,-8.61551	0/1:55:16,39:16:557:39:1364:-37.2163,0,-15.1913	0/1:147:48,99:48:1712:99:3503:-86.1915,0,-79.0944	0/1:159:21,138:21:752:138:4902:-151.604,0,-8.18392
chr05	20074708	.	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chr05	20108360	.	C	T	111556	PASS	AB=0.461213;ABP=49.334;AC=138;AF=0.734043;AN=188;AO=5378;CIGAR=1X;DP=7301;DPB=7301;DPRA=80.1978;EPP=11681.2;EPPR=4161.38;GTI=2;LEN=1;MEANALT=1.04396;MQM=59.9968;MQMR=59.9984;NS=94;NUMALT=1;ODDS=1.49184;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190728;QR=67238;RO=1919;RPL=5378;RPP=11681.2;RPPR=4161.38;RPR=0;RUN=1;SAF=5378;SAP=11681.2;SAR=0;SRF=1919;SRP=4170.07;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:17,16:17:599:16:572:-41.8794,0,-44.3041	1/1:91:0,91:0:0:91:3205:-288.673,-27.3937,0	0/1:66:37,29:37:1315:29:1032:-73.3255,0,-98.783	1/1:114:0,114:0:0:114:4032:-363.071,-34.3174,0	1/1:61:0,61:0:0:61:2163:-194.934,-18.3628,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:95:57,38:57:2008:38:1339:-92.2106,0,-152.393	1/1:89:0,89:0:0:89:3127:-281.657,-26.7917,0	0/1:69:41,28:41:1459:28:995:-69.0929,0,-110.834	1/1:89:0,89:0:0:89:3156:-284.265,-26.7917,0	1/1:88:0,88:0:0:88:3103:-279.5,-26.4906,0	0/1:79:28,51:28:969:51:1804:-138.86,0,-63.7354	0/1:66:40,26:40:1402:26:923:-63.5188,0,-106.608	0/1:86:48,38:48:1690:38:1327:-93.8367,0,-126.496	1/1:59:0,59:0:0:59:2106:-189.809,-17.7608,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:53:0,53:0:0:53:1883:-169.748,-15.9546,0	1/1:47:1,46:1:36:46:1622:-142.669,-10.5501,0	1/1:53:0,53:0:0:53:1898:-171.098,-15.9546,0	0/1:311:195,116:195:6860:116:4126:-277.905,0,-523.857	1/1:117:0,117:0:0:117:4150:-373.683,-35.2205,0	0/1:105:76,29:76:2660:29:1020:-60.504,0,-208.038	0/1:54:26,27:26:906:27:964:-70.7625,0,-65.5395	1/1:71:0,71:0:0:71:2493:-224.619,-21.3731,0	1/1:44:0,44:0:0:44:1565:-141.141,-13.2453,0	1/1:169:0,169:0:0:169:5966:-537.054,-50.8741,0	0/1:183:104,78:104:3600:78:2770:-194.393,0,-269.06	0/1:49:29,20:29:1004:20:716:-50.0172,0,-75.9172	0/1:255:114,141:114:3963:141:4996:-373.023,0,-280.101	0/1:80:32,47:32:1126:47:1658:-125.365,0,-77.5057	1/1:80:0,80:0:0:80:2831:-255.027,-24.0824,0	0/1:5:4,1:4:125:1:36:-2.09312,0,-10.0535	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	1/1:198:0,198:0:0:198:6971:-627.463,-59.6039,0	1/1:119:0,119:0:0:119:4229:-380.791,-35.8226,0	1/1:76:0,76:0:0:76:2694:-242.705,-22.8783,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:89:44,45:44:1494:45:1603:-117.769,0,-107.951	0/1:42:25,17:25:872:17:583:-40.1478,0,-66.1531	0/1:123:53,70:53:1870:70:2481:-186.516,0,-131.551	0/1:74:42,32:42:1466:32:1123:-79.1001,0,-109.954	1/1:47:0,47:0:0:47:1672:-150.767,-14.1484,0	1/1:78:0,78:0:0:78:2770:-249.54,-23.4803,0	1/1:98:0,97:0:0:97:3445:-310.062,-29.1999,0	0/1:66:32,34:32:1117:34:1212:-89.5183,0,-80.9672	1/1:75:0,75:0:0:75:2650:-238.747,-22.5773,0	1/1:113:0,113:0:0:113:4024:-362.347,-34.0164,0	1/1:101:0,101:0:0:101:3567:-321.241,-30.404,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:97:0,97:0:0:97:3454:-311.073,-29.1999,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/1:103:55,48:55:1936:48:1693:-121.649,0,-143.508	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:8:6,2:6:212:2:68:-4.04947,0,-17.0166	0/1:16:6,10:6:212:10:356:-27.5648,0,-14.6083	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0	0/1:102:50,52:50:1763:52:1819:-133.283,0,-128.248	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/1:154:96,58:96:3344:58:2065:-139.761,0,-254.821	0/1:158:76,82:76:2711:82:2927:-216.102,0,-196.671	0/1:59:30,29:30:1068:29:1025:-74.7999,0,-78.6697	0/1:77:35,42:35:1217:42:1512:-113.195,0,-86.6517	1/1:85:1,84:1:36:84:3002:-266.813,-21.9893,0	0/1:81:48,33:48:1693:33:1175:-81.6735,0,-128.271	0/1:51:18,33:18:621:33:1184:-91.5158,0,-40.8587	0/1:91:53,38:53:1887:38:1333:-92.8749,0,-142.714	0/1:66:34,32:34:1181:32:1136:-82.6809,0,-86.7242	0/1:16:14,2:14:500:2:63:-1.16668,0,-40.5197	1/1:91:0,91:0:0:91:3199:-288.131,-27.3937,0	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	1/1:117:0,117:0:0:117:4157:-374.314,-35.2205,0	1/1:140:1,139:1:36:139:4972:-444.029,-38.5459,0	0/1:34:13,21:13:468:21:747:-57.3193,0,-32.2246	1/1:101:0,101:0:0:101:3597:-323.936,-30.404,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:108:0,108:0:0:108:3831:-344.986,-32.5112,0	0/1:89:56,33:56:1991:33:1179:-79.6256,0,-152.672	1/1:144:2,142:2:68:142:5048:-448.01,-36.8906,0	1/1:86:2,84:2:72:84:2932:-257.279,-19.0519,0	0/1:57:29,28:29:1019:28:983:-71.6238,0,-74.8626	1/1:69:0,69:0:0:69:2434:-219.313,-20.7711,0	0/1:163:80,83:80:2779:83:2905:-212.614,0,-201.282	0/1:42:25,17:25:867:17:612:-42.7702,0,-65.7015	1/1:57:0,57:0:0:57:2024:-182.433,-17.1587,0	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	1/1:59:1,58:1:36:58:2071:-183.062,-14.1625,0	0/1:144:73,71:73:2521:71:2526:-184.243,0,-183.793	0/1:69:53,16:53:1855:16:576:-31.4039,0,-146.453	1/1:70:0,70:0:0:70:2478:-223.273,-21.0721,0	1/1:101:1,100:1:36:100:3579:-318.718,-26.8058,0
chr05	20108387	.	C	T	44789	PASS	AB=0.532248;ABP=47.4069;AC=44;AF=0.234043;AN=188;AO=2629;CIGAR=1X;DP=11099;DPB=11099;DPRA=1.17063;EPP=5711.81;EPPR=18378;GTI=0;LEN=1;MEANALT=1.11765;MQM=59.9525;MQMR=59.956;NS=94;NUMALT=1;ODDS=3.47412;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93538;QR=299213;RO=8462;RPL=0;RPP=5711.81;RPPR=18369.3;RPR=2629;RUN=1;SAF=0;SAP=5711.81;SAR=2629;SRF=1;SRP=18369.3;SRR=8461;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:31,10:31:1095:10:352:-19.676,0,-86.5169	0/0:123:123,0:123:4366:0:0:0,-37.0267,-393.102	0/1:132:60,72:60:2104:72:2560:-190.915,0,-149.702	0/0:205:205,0:205:7211:0:0:0,-61.7111,-649.052	0/0:75:75,0:75:2660:0:0:0,-22.5772,-239.645	0/0:115:112,2:112:4012:2:72:0,-27.8405,-354.424	0/1:182:69,113:69:2419:113:4019:-307.113,0,-163.177	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/1:84:56,28:56:1996:28:1004:-65.3195,0,-154.627	0/0:107:106,0:106:3771:0:0:0,-31.9092,-339.231	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:91:45,46:45:1595:46:1648:-121.215,0,-116.446	0/1:112:55,57:55:1960:57:1988:-145.318,0,-142.96	0/1:76:27,49:27:955:49:1742:-134.185,0,-63.3866	0/0:81:81,0:81:2890:0:0:0,-24.3834,-260.335	0/0:63:63,0:63:2220:0:0:0,-18.9649,-200.063	0/0:79:79,0:79:2798:0:0:0,-23.7814,-252.055	0/0:150:150,0:150:5323:0:0:0,-45.1545,-479.198	0/0:62:62,0:62:2185:0:0:0,-18.6639,-196.915	0/1:166:87,79:87:3086:79:2810:-203.169,0,-227.995	0/0:218:218,0:218:7697:0:0:0,-65.6245,-692.759	0/1:229:66,163:66:2315:163:5815:-454.529,0,-139.673	0/1:80:37,43:37:1328:43:1535:-114.36,0,-95.7398	0/0:188:188,0:188:6639:0:0:0,-56.5936,-597.593	0/0:94:94,0:94:3332:0:0:0,-28.2968,-300.098	0/0:344:343,0:343:12087:0:0:0,-103.253,-1087.34	0/1:202:91,111:91:3220:111:3942:-294.166,0,-229.205	0/1:44:20,24:20:699:24:848:-63.3943,0,-49.9871	0/1:267:131,136:131:4601:136:4880:-358.92,0,-333.866	0/1:115:50,64:50:1780:64:2291:-171.774,0,-125.806	0/0:164:164,0:164:5797:0:0:0,-49.3689,-521.848	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:6:1,5:1:36:5:171:-13.9193,0,-1.79209	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/0:243:242,1:242:8438:1:36:0,-69.552,-755.838	0/0:189:189,0:189:6662:0:0:0,-56.8947,-599.662	0/0:86:86,0:86:3066:0:0:0,-25.8886,-276.168	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:144:69,75:69:2459:75:2671:-197.286,0,-178.216	0/1:60:33,27:33:1154:27:954:-68.1122,0,-86.103	0/1:196:102,94:102:3601:94:3363:-243.884,0,-265.29	0/1:244:115,129:115:4052:129:4597:-340.443,0,-291.417	0/0:78:78,0:78:2740:0:0:0,-23.4803,-246.843	0/0:131:131,0:131:4644:0:0:0,-39.4349,-418.123	0/0:114:114,0:114:4019:0:0:0,-34.3174,-361.899	0/1:115:72,43:72:2535:43:1525:-102.921,0,-193.782	0/0:156:156,0:156:5518:0:0:0,-46.9607,-496.748	0/0:182:182,0:182:6419:0:0:0,-54.7875,-577.804	0/0:204:204,0:204:7237:0:0:0,-61.4101,-651.388	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.919	0/0:32:32,0:32:1130:0:0:0,-9.63296,-102.007	0/1:17:6,11:6:207:11:396:-30.8652,0,-13.8494	0/1:121:68,52:68:2415:52:1850:-130.326,0,-181.033	0/0:80:80,0:80:2821:0:0:0,-24.0824,-254.13	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:19:8,11:8:284:11:396:-30.2632,0,-20.1838	0/0:50:50,0:50:1775:0:0:0,-15.0515,-160.032	0/1:152:79,73:79:2828:73:2590:-187.592,0,-208.989	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:191:104,87:104:3683:87:3107:-222.36,0,-274.176	0/1:229:120,109:120:4256:109:3855:-278.205,0,-314.284	0/1:51:14,37:14:500:37:1300:-101.946,0,-29.9836	0/1:96:41,55:41:1448:55:1960:-147.774,0,-101.717	0/0:306:304,2:304:10835:2:72:0,-85.2785,-967.592	0/1:153:54,99:54:1897:99:3529:-271.761,0,-124.912	0/1:18:7,11:7:230:11:396:-30.5642,0,-15.6027	0/1:88:36,52:36:1280:52:1843:-139.655,0,-89.0031	0/1:100:42,58:42:1494:58:2075:-156.917,0,-104.65	0/1:24:11,13:11:374:13:464:-34.8728,0,-26.7617	0/0:121:121,0:121:4264:0:0:0,-36.4246,-383.94	0/0:83:83,0:83:2919:0:0:0,-24.9855,-262.944	0/0:157:157,0:157:5541:0:0:0,-47.2617,-498.808	0/0:166:164,2:164:5780:2:72:0,-43.1343,-513.484	0/1:192:119,73:119:4216:73:2599:-176.361,0,-321.825	0/0:333:331,2:331:11738:2:72:0,-93.4063,-1049.46	0/1:11:4,7:4:131:7:252:-19.7176,0,-8.80214	0/0:97:94,2:94:3322:2:63:0,-23.2606,-293.199	0/1:166:66,100:66:2336:100:3546:-269.379,0,-160.519	0/0:277:274,2:274:9652:2:72:0,-76.6074,-861.702	0/0:129:129,0:129:4559:0:0:0,-38.8329,-410.474	0/1:61:36,25:36:1292:25:900:-62.9582,0,-98.2209	0/0:142:142,0:142:5001:0:0:0,-42.7463,-450.24	0/1:235:111,124:111:3937:124:4422:-327.408,0,-283.779	0/1:52:23,29:23:820:29:1036:-77.9004,0,-58.469	0/0:93:93,0:93:3288:0:0:0,-27.9958,-296.14	0/0:82:82,0:82:2865:0:0:0,-24.6845,-258.09	0/0:26:26,0:26:906:0:0:0,-7.82678,-81.8535	0/1:112:34,77:34:1204:77:2748:-213.877,0,-74.9791	0/1:211:81,130:81:2858:130:4564:-347.412,0,-193.942	0/0:154:154,0:154:5473:0:0:0,-46.3586,-492.7	0/0:143:143,0:143:5046:0:0:0,-43.0473,-454.244
chr05	20108399	.	C	A	176812	PASS	AB=0.465948;ABP=52.5516;AC=144;AF=0.765957;AN=188;AO=8445;CIGAR=1X;DP=11093;DPB=11093;DPRA=0;EPP=18341.1;EPPR=5731.35;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.9369;MQMR=59.9689;NS=94;NUMALT=1;ODDS=3.1534;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=298580;QR=93640;RO=2638;RPL=0;RPP=18341.1;RPPR=5731.35;RPR=8445;RUN=1;SAF=0;SAP=18341.1;SAR=8445;SRF=0;SRP=5731.35;SRR=2638;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:9,28:9:320:28:1004:-79.5378,0,-18.0042	1/1:125:0,123:0:0:123:4365:-392.666,-37.0267,0	0/1:132:75,57:75:2672:57:2031:-143.136,0,-200.99	1/1:209:0,209:0:0:209:7369:-663.266,-62.9153,0	1/1:75:0,75:0:0:75:2653:-239.013,-22.5773,0	1/1:114:2,112:2:72:112:3956:-349.388,-27.4807,0	0/1:181:110,71:110:3907:71:2482:-169.146,0,-297.339	1/1:70:0,70:0:0:70:2503:-225.522,-21.0721,0	0/1:87:29,58:29:1028:58:2058:-159.299,0,-66.5727	1/1:108:0,108:0:0:108:3848:-346.518,-32.5112,0	1/1:60:0,59:0:0:59:2079:-187.019,-17.7608,0	0/1:91:44,47:44:1546:47:1668:-123.014,0,-112.037	0/1:115:56,59:56:1959:59:2089:-153.652,0,-141.94	0/1:74:47,27:47:1649:27:964:-64.8006,0,-126.419	1/1:82:1,81:1:36:81:2898:-257.456,-21.0862,0	1/1:66:0,66:0:0:66:2324:-209.42,-19.868,0	1/1:81:1,80:1:36:80:2820:-250.435,-20.7852,0	1/1:155:0,154:0:0:154:5415:-487.125,-46.3586,0	1/1:61:1,60:1:27:60:2106:-187.109,-15.663,0	0/1:166:82,84:82:2944:84:2980:-218.461,0,-215.222	1/1:218:0,218:0:0:218:7726:-695.331,-65.6245,0	0/1:219:158,61:158:5614:61:2172:-129.821,0,-439.457	0/1:83:46,37:46:1633:37:1319:-94.0257,0,-122.271	1/1:191:0,191:0:0:191:6778:-610.093,-57.4967,0	1/1:97:0,97:0:0:97:3437:-309.543,-29.1999,0	1/1:340:0,340:0:0:340:12026:-1082.2,-102.35,0	0/1:202:113,89:113:4013:89:3151:-223.006,0,-300.551	0/1:42:23,19:23:802:19:672:-48.1636,0,-59.8542	0/1:266:135,131:135:4791:131:4605:-334.481,0,-351.277	0/1:116:64,52:64:2304:52:1856:-132.4,0,-172.701	1/1:158:0,158:0:0:158:5624:-505.656,-47.5627,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:242:1,241:1:36:241:8456:-757.456,-69.251,0	1/1:186:0,186:0:0:186:6614:-595.342,-55.9916,0	1/1:87:0,87:0:0:87:3039:-273.739,-26.1896,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:146:76,70:76:2719:70:2471:-178.692,0,-201.002	0/1:61:30,31:30:1052:31:1096:-80.5864,0,-76.6249	0/1:199:96,103:96:3435:103:3660:-269.699,0,-249.458	0/1:249:135,114:135:4787:114:4028:-287.754,0,-356.032	1/1:76:0,76:0:0:76:2659:-239.556,-22.8783,0	1/1:131:0,131:0:0:131:4648:-418.48,-39.4349,0	1/1:111:0,111:0:0:111:3924:-353.355,-33.4143,0	0/1:119:44,75:44:1572:75:2662:-203.635,0,-105.947	1/1:152:0,151:0:0:151:5377:-483.117,-45.4555,0	1/1:183:0,183:0:0:183:6439:-579.603,-55.0885,0	1/1:209:0,209:0:0:209:7380:-664.252,-62.9153,0	0/1:16:8,8:8:284:8:284:-21.0869,0,-21.0869	1/1:102:0,102:0:0:102:3598:-324,-30.7051,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:18:11,7:11:392:7:237:-16.2405,0,-30.2015	0/1:116:48,68:48:1707:68:2419:-183.047,0,-118.996	1/1:78:0,78:0:0:78:2741:-246.928,-23.4803,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	0/1:151:72,79:72:2546:79:2780:-204.972,0,-183.933	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:190:87,103:87:3089:103:3647:-271.238,0,-221.042	0/1:225:107,117:107:3804:117:4148:-305.751,0,-274.802	0/1:52:37,14:37:1297:14:492:-28.9006,0,-101.317	0/1:97:55,42:55:1945:42:1491:-105.284,0,-146.122	1/1:298:2,296:2:72:296:10498:-937.91,-82.8702,0	0/1:157:98,59:98:3502:59:2068:-139.114,0,-268.128	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	0/1:90:51,39:51:1807:39:1390:-98.3006,0,-135.782	0/1:104:60,44:60:2141:44:1549:-108.392,0,-161.649	0/1:21:11,10:11:387:10:360:-26.4227,0,-28.8443	1/1:128:0,128:0:0:128:4529:-407.769,-38.5318,0	1/1:84:0,84:0:0:84:2948:-265.54,-25.2865,0	1/1:155:0,155:0:0:155:5420:-487.936,-46.6597,0	1/1:162:1,161:1:36:161:5739:-513.027,-45.1686,0	0/1:198:80,118:80:2836:118:4163:-315.251,0,-195.874	1/1:336:2,334:2:72:334:11834:-1058.07,-94.3094,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:99:0,99:0:0:99:3486:-313.951,-29.802,0	0/1:165:102,63:102:3620:63:2213:-149.752,0,-276.335	1/1:275:2,273:2:72:273:9675:-863.765,-75.9465,0	1/1:129:0,129:0:0:129:4512:-406.246,-38.8329,0	0/1:59:25,34:25:879:34:1212:-91.6256,0,-61.666	1/1:141:0,141:0:0:141:4952:-445.831,-42.4452,0	0/1:232:122,110:122:4279:110:3883:-279.821,0,-315.452	0/1:51:29,22:29:1031:22:788:-55.8923,0,-77.7501	1/1:93:0,93:0:0:93:3299:-297.131,-27.9958,0	1/1:84:0,83:0:0:83:2928:-263.396,-24.9855,0	1/1:26:0,26:0:0:26:912:-82.3931,-7.82678,0	0/1:109:73,36:73:2562:36:1265:-81.3383,0,-198.016	0/1:218:137,81:137:4894:81:2832:-189.496,0,-374.987	1/1:150:0,148:0:0:148:5214:-469.058,-44.5524,0	1/1:137:0,137:0:0:137:4824:-434.317,-41.2411,0
chr05	20108477	.	T	A	43781.5	PASS	AB=0.52435;ABP=27.9674;AC=46;AF=0.244681;AN=188;AO=2567;CIGAR=1X;DP=10464;DPB=10464;DPRA=1.20936;EPP=5577.18;EPPR=17151.1;GTI=0;LEN=1;MEANALT=1;MQM=59.9813;MQMR=59.9846;NS=94;NUMALT=1;ODDS=5.83782;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91623;QR=282533;RO=7897;RPL=4;RPP=5542.49;RPPR=17090.4;RPR=2563;RUN=1;SAF=2563;SAP=5542.49;SAR=4;SRF=7890;SRP=17090.4;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:19,31:19:680:31:1108:-84.9795,0,-46.4777	0/0:169:167,2:167:5988:2:72:0,-44.0373,-532.188	0/1:88:39,49:39:1396:49:1748:-131.114,0,-99.4485	0/0:240:239,1:239:8549:1:36:0,-68.6489,-765.694	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/1:215:101,114:101:3600:114:4076:-302.305,0,-259.486	0/0:190:190,0:190:6812:0:0:0,-57.1957,-613.15	0/1:114:67,47:67:2376:47:1687:-117.744,0,-179.781	0/0:83:82,1:82:2928:1:36:0,-21.3872,-260.157	0/0:74:74,0:74:2637:0:0:0,-22.2762,-237.576	0/1:105:48,57:48:1720:57:2029:-151.216,0,-123.477	0/1:90:46,44:46:1652:44:1584:-115.759,0,-121.876	0/1:139:79,60:79:2816:60:2156:-152.464,0,-211.837	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:113:113,0:113:4048:0:0:0,-34.0164,-364.507	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:237:128,109:128:4596:109:3881:-278.141,0,-342.457	0/0:145:145,0:145:5184:0:0:0,-43.6493,-466.701	0/1:99:35,64:35:1252:64:2295:-177.008,0,-83.1831	0/1:47:29,18:29:1044:18:648:-44.5035,0,-80.1264	0/0:116:116,0:116:4132:0:0:0,-34.9195,-372.066	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:289:287,2:287:10253:2:57:0,-81.5844,-917.285	0/1:234:109,125:109:3892:125:4476:-332.568,0,-280.034	0/1:51:26,25:26:928:25:892:-65.247,0,-68.4857	0/1:305:151,154:151:5382:154:5444:-398.257,0,-392.696	0/1:174:73,101:73:2596:101:3575:-269.576,0,-181.51	0/0:156:156,0:156:5588:0:0:0,-46.9607,-503.042	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:261:257,4:257:9216:4:144:0,-65.2552,-816.094	0/0:135:135,0:135:4824:0:0:0,-40.639,-434.316	0/0:78:77,1:77:2752:1:36:0,-19.8821,-244.323	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:175:58,117:58:2076:117:4093:-315.876,0,-134.43	0/1:48:19,29:19:676:29:1040:-79.4649,0,-46.7186	0/1:148:82,66:82:2928:66:2364:-168.466,0,-219.198	0/1:94:45,49:45:1616:49:1760:-130.387,0,-117.433	0/0:105:102,3:102:3668:3:93:0,-22.9314,-321.645	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:131:131,0:131:4700:0:0:0,-39.4349,-423.159	0/1:197:87,110:87:3108:110:3936:-295.13,0,-220.645	0/0:129:129,0:129:4624:0:0:0,-38.8329,-416.323	0/0:178:177,1:177:6328:1:36:0,-49.9851,-566.015	0/0:216:214,2:214:7621:2:72:0,-58.1858,-679.087	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:149:149,0:149:5340:0:0:0,-44.8535,-480.715	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:169:73,96:73:2628:96:3432:-258.22,0,-185.892	0/0:54:53,1:53:1896:1:36:0,-12.6573,-167.32	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	0/1:21:7,14:7:252:14:504:-39.3765,0,-16.7073	0/0:90:90,0:90:3209:0:0:0,-27.0927,-289.032	0/1:166:84,82:84:3020:82:2940:-214.863,0,-222.059	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:207:119,88:119:4260:88:3129:-219.523,0,-321.265	0/1:214:112,102:112:4012:102:3664:-265.542,0,-296.762	0/1:77:38,39:38:1356:39:1404:-103.48,0,-99.1612	0/1:100:60,40:60:2136:40:1432:-99.0746,0,-162.405	0/0:144:143,1:143:5093:1:36:0,-39.75,-454.917	0/1:88:30,58:30:1076:58:2084:-161.339,0,-70.6622	0/1:43:22,21:22:784:21:748:-54.701,0,-57.9396	0/1:106:29,77:29:1040:77:2764:-217.092,0,-62.0052	0/1:121:60,61:60:2152:61:2192:-161.121,0,-157.436	0/1:25:10,15:10:360:15:532:-40.6873,0,-25.2186	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.722	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:202:202,0:202:7216:0:0:0,-60.8081,-649.496	0/0:129:129,0:129:4620:0:0:0,-38.8329,-415.963	0/1:144:64,80:64:2300:80:2872:-215.368,0,-163.912	0/0:129:128,1:128:4596:1:36:0,-35.2346,-410.204	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:135:135,0:135:4829:0:0:0,-40.639,-434.763	0/1:142:65,77:65:2320:77:2725:-202.747,0,-166.314	0/0:258:257,1:257:9212:1:36:0,-74.0675,-825.45	0/0:138:138,0:138:4939:0:0:0,-41.5421,-444.657	0/1:74:50,24:50:1792:24:864:-55.8063,0,-139.286	0/0:105:105,0:105:3752:0:0:0,-31.6081,-337.881	0/1:169:76,93:76:2716:93:3302:-246.523,0,-193.81	0/1:47:23,24:23:812:24:860:-63.5734,0,-59.2525	0/0:97:95,2:95:3408:2:72:0,-22.3632,-300.097	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.709	0/0:58:57,1:57:2036:1:36:0,-13.8615,-179.914	0/1:145:74,71:74:2656:71:2544:-185.561,0,-195.636	0/1:90:34,56:34:1212:56:2001:-153.269,0,-82.2936	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:129:127,2:127:4544:2:72:0,-31.9961,-402.286
chr05	20108842	.	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chr05	20253177	.	G	A	27033.5	PASS	AB=0.539095;ABP=41.7215;AC=43;AF=0.231183;AN=186;AO=1579;CIGAR=1X;DP=5660;DPB=5660;DPRA=1.28269;EPP=3431.77;EPPR=8849.59;GTI=3;LEN=1;MEANALT=1;MQM=59.5364;MQMR=59.9912;NS=93;NUMALT=1;ODDS=0.100462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56535;QR=145802;RO=4078;RPL=1579;RPP=3431.77;RPPR=8849.59;RPR=0;RUN=1;SAF=0;SAP=3431.77;SAR=1579;SRF=0;SRP=8858.27;SRR=4078;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:5,15:5:180:15:540:-41.9734,0,-10.5315	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/1:94:48,46:48:1707:46:1644:-119.941,0,-125.618	0/0:116:116,0:116:4151:0:0:0,-34.9195,-373.773	0/0:41:38,3:38:1352:3:108:0,-2.26706,-111.905	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:129:65,64:65:2324:64:2285:-167.008,0,-170.587	0/0:71:70,1:70:2508:1:36:0,-17.7749,-222.374	0/1:40:21,19:21:752:19:684:-49.8327,0,-55.9651	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:53:28,25:28:987:25:891:-64.546,0,-73.1884	0/1:71:33,38:33:1184:38:1359:-101.224,0,-85.4952	0/1:51:29,22:29:1044:22:792:-56.2531,0,-78.7924	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:179:77,102:77:2764:102:3626:-272.584,0,-195.117	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.488	0/1:129:50,79:50:1792:79:2836:-216.604,0,-122.73	0/1:17:11,6:11:396:6:216:-14.6667,0,-30.8652	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:141:140,0:140:5000:0:0:0,-42.1442,-449.789	0/1:96:28,68:28:1004:68:2430:-190.035,0,-61.777	0/1:36:23,13:23:812:13:457:-30.6252,0,-62.5592	0/1:237:118,119:118:4232:119:4265:-312.649,0,-309.715	0/1:78:25,53:25:900:53:1895:-147.337,0,-57.8407	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:17:16,1:16:576:1:36:0,-1.51923,-48.5767	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:127:126,1:126:4507:1:36:0,-34.6325,-402.2	0/0:118:118,0:118:4212:0:0:0,-35.5215,-379.262	0/0:60:60,0:60:2134:0:0:0,-18.0618,-192.327	.:.:.:.:.:.:.:.	0/1:109:64,45:64:2300:45:1612:-112.549,0,-174.449	0/1:45:17,28:17:599:28:1004:-77.1249,0,-40.6917	0/1:100:42,58:42:1500:58:2080:-157.365,0,-105.192	0/1:39:19,20:19:684:20:716:-52.9651,0,-50.1502	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.08	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:125:75,50:75:2684:50:1777:-122.575,0,-204.176	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.04	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:116:116,0:116:4140:0:0:0,-34.9195,-372.785	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:95:94,0:94:3351:0:0:0,-28.2968,-301.448	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6397	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/1:100:40,60:40:1436:60:2156:-164.186,0,-99.4347	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.195	0/1:104:51,53:51:1801:53:1908:-140.69,0,-131.063	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:136:64,72:64:2296:72:2592:-192.533,0,-165.961	0/1:88:33,55:33:1165:55:1976:-151.437,0,-78.6644	0/1:38:23,15:23:828:15:536:-37.1357,0,-63.405	0/1:74:26,48:26:936:48:1722:-132.94,0,-62.2832	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:40:11,29:11:388:29:1032:-81.1455,0,-23.2162	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:49:19,30:19:684:30:1076:-82.3942,0,-47.1399	0/1:53:23,30:23:819:30:1072:-80.8297,0,-58.077	0/1:22:10,12:10:356:12:428:-32.2361,0,-25.7586	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.858	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/1:79:37,42:37:1312:42:1500:-111.494,0,-94.6003	0/0:43:42,0:42:1503:0:0:0,-12.6433,-135.204	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/1:117:58,59:58:2065:59:2120:-155.755,0,-150.899	0/0:98:97,1:97:3476:1:36:0,-25.9027,-309.453	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:40:18,22:18:648:22:777:-58.1805,0,-46.6107	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:111:52,59:52:1864:59:2114:-156.944,0,-134.625	0/1:28:13,15:13:464:15:540:-40.5077,0,-33.6687	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:75:30,45:30:1076:45:1616:-123.012,0,-74.5756	0/1:44:19,25:19:680:25:893:-67.4321,0,-48.2838	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616
chr05	20690680	.	A	C	17800	PASS	AB=0.546654;ABP=41.7096;AC=49;AF=0.260638;AN=188;AO=1130;CIGAR=1X;DP=3985;DPB=3985;DPRA=1.14694;EPP=2456.77;EPPR=6200.39;GTI=0;LEN=1;MEANALT=1;MQM=42.6903;MQMR=59.5858;NS=94;NUMALT=1;ODDS=1.41521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39765;QR=101121;RO=2854;RPL=1130;RPP=2456.77;RPPR=6200.39;RPR=0;RUN=1;SAF=1130;SAP=2456.77;SAR=0;SRF=2854;SRP=6200.39;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:18,12:18:632:12:424:-28.854,0,-48.1503	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8835	0/1:93:49,44:49:1752:44:1572:-110.503,0,-128.576	0/0:104:104,0:104:3660:0:0:0,-31.3071,-329.604	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.013	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:27:11,16:11:387:16:564:-41.9273,0,-26.9679	0/0:74:74,0:74:2615:0:0:0,-22.2762,-235.54	0/1:28:17,11:17:589:11:388:-26.2391,0,-44.7979	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.3911	0/1:43:19,24:19:680:24:824:-60.275,0,-48.5849	0/1:42:17,25:17:600:25:892:-66.1153,0,-41.6859	0/1:28:18,10:18:644:10:360:-23.2959,0,-49.8618	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2606	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8032	0/1:98:48,50:48:1704:50:1755:-125.117,0,-124.142	0/0:31:31,0:31:1090:0:0:0,-9.33193,-98.4079	0/1:118:42,76:42:1496:76:2652:-198.849,0,-99.4055	0/1:95:54,41:54:1936:41:1447:-98.6991,0,-145.909	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6288	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.863	0/0:116:116,0:116:4128:0:0:0,-34.9195,-371.698	0/1:87:39,48:39:1392:48:1675:-120.369,0,-99.272	0/1:10:3,7:3:108:7:248:-18.9625,0,-7.06487	0/1:119:53,66:53:1852:66:2314:-169.504,0,-130.944	0/1:64:28,36:28:1000:36:1283:-91.7458,0,-71.0019	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.961	1/1:3:0,3:0:0:3:108:-9.79768,-0.90309,0	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8035	1/1:2:0,2:0:0:2:72:-6.71863,-0.60206,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:4,4:4:144:4:144:-10.6754,0,-10.9054	0/0:61:61,0:61:2149:0:0:0,-18.3628,-193.671	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.928	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	1/1:3:0,3:0:0:3:108:-9.74595,-0.90309,0	0/1:82:34,48:34:1212:48:1671:-120.846,0,-84.6929	0/1:13:6,7:6:216:7:239:-17.0055,0,-15.8737	0/1:80:33,47:33:1152:47:1649:-120.247,0,-79.8967	0/1:20:16,4:16:572:4:140:-6.67951,0,-45.7928	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4035	0/0:67:67,0:67:2370:0:0:0,-20.169,-213.546	0/0:50:50,0:50:1767:0:0:0,-15.0515,-159.252	0/1:87:37,50:37:1305:50:1762:-128.912,0,-91.5567	0/0:56:56,0:56:1988:0:0:0,-16.8577,-179.191	0/0:65:65,0:65:2303:0:0:0,-19.5669,-207.526	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.06	0/1:10:5,5:5:180:5:172:-12.5346,0,-13.5402	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.861	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/1:6:3,3:3:104:3:99:-7.30659,0,-7.89663	0/1:65:25,40:25:896:40:1362:-99.6261,0,-61.3934	0/0:37:37,0:37:1303:0:0:0,-11.1381,-117.569	0/1:9:6,3:6:216:3:108:-7.22657,0,-17.0812	0/1:9:4,5:4:144:5:171:-12.827,0,-10.6043	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4084	0/1:66:34,32:34:1207:32:1144:-80.4841,0,-89.0627	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:76:39,37:39:1392:37:1291:-91.595,0,-102.7	0/1:93:51,42:51:1784:42:1485:-103.239,0,-132.826	0/1:26:6,20:6:207:20:720:-54.5769,0,-11.1401	0/1:54:19,35:19:680:35:1248:-93.0142,0,-45.2704	0/0:89:87,2:87:3079:2:72:0,-20.1018,-270.598	0/1:88:17,71:17:604:71:2500:-193.636,0,-28.1969	0/1:13:4,9:4:144:9:311:-23.599,0,-9.40023	0/1:23:11,12:11:380:12:423:-30.8224,0,-27.5201	0/1:30:13,17:13:468:17:600:-44.1716,0,-33.411	0/1:10:5,5:5:180:5:180:-13.1863,0,-13.5355	0/0:66:66,0:66:2329:0:0:0,-19.868,-209.843	0/0:17:17,0:17:585:0:0:0,-5.11751,-52.8683	0/0:50:50,0:50:1780:0:0:0,-15.0515,-159.669	0/0:67:66,0:66:2348:0:0:0,-19.868,-211.318	0/1:109:52,57:52:1828:57:2035:-146.844,0,-131.884	0/0:27:26,1:26:920:1:36:0,-4.59169,-79.5223	0/1:7:2,5:2:68:5:176:-13.8253,0,-4.3505	0/0:42:42,0:42:1469:0:0:0,-12.6433,-132.496	0/1:52:29,23:29:1036:23:789:-54.3263,0,-77.8897	0/0:101:101,0:101:3579:0:0:0,-30.404,-321.678	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.287	0/1:24:13,11:13:456:11:385:-26.8895,0,-34.018	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0888	0/1:38:17,21:17:603:21:748:-54.7225,0,-43.157	0/1:11:7,4:7:239:4:144:-9.77232,0,-18.53	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.2815	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.793	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:37:16,21:16:564:21:739:-53.4072,0,-39.9393	0/1:19:4,15:4:144:15:536:-41.845,0,-7.59405	0/0:55:55,0:55:1937:0:0:0,-16.5566,-174.601	0/0:38:38,0:38:1334:0:0:0,-11.4391,-120.354
chr05	21119134	.	CCATAT	TCACAC,TCATAT	103123	PASS	AB=0.526633,0.467346;ABP=16.3117,23.0062;AC=141,47;AF=0.75,0.25;AN=188;AO=4038,1052;CIGAR=1X2M1X1M1X,1X5M;DP=5111;DPB=5110.83;DPRA=7.84025,0.976576;EPP=8771.42,2287.4;EPPR=0;GTI=4;LEN=6,1;MEANALT=1.70968,2.2449;MQM=41.0632,59.7842;MQMR=0;NS=94;NUMALT=2;ODDS=1.24808;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.333333;PQA=12,12;PQR=0;PRO=0;QA=140785,37549;QR=0;RO=0;RPL=4038,1052;RPP=8771.42,2287.4;RPPR=0;RPR=0,0;RUN=1,1;SAF=4038,1052;SAP=8771.42,2287.4;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,26,12:0:0:26,12:909,432:-104.116,-35.2498,-27.4231,-68.8576,0,-65.2453	1/1:18:0,18,0:0:0:18,0:613,0:-53.8541,-5.41854,0,-53.8541,-5.41854,-53.8541	1/2:59:0,22,37:0:0:22,37:782,1309:-167.914,-106.971,-100.349,-61.2888,0,-50.1507	1/1:100:0,100,0:0:0:100,0:3485,0:-303.332,-30.103,0,-303.332,-30.103,-303.332	1/1:123:0,122,0:0:0:122,0:4283,0:-370.926,-36.7257,0,-370.926,-36.7257,-370.926	1/1:59:0,59,0:0:0:59,0:2047,0:-177.599,-17.7608,0,-177.599,-17.7608,-177.599	1/2:75:0,39,35:0:0:39,35:1356,1252:-209.502,-102.196,-90.4557,-107.402,0,-96.8657	1/1:69:0,68,0:0:0:68,0:2389,0:-208.432,-20.47,0,-208.432,-20.47,-208.432	1/2:69:0,22,43:0:0:22,43:766,1535:-184.702,-125.104,-118.481,-59.5925,0,-46.6482	1/1:52:0,52,0:0:0:52,0:1808,0:-158.052,-15.6536,0,-158.052,-15.6536,-158.052	1/1:59:0,58,0:0:0:58,0:2018,0:-176.213,-17.4597,0,-176.213,-17.4597,-176.213	1/2:39:0,17,22:0:0:17,22:591,788:-111.129,-64.6221,-59.5046,-46.8534,0,-40.2308	1/2:36:0,21,15:0:0:21,15:742,536:-101.757,-44.043,-37.7213,-58.0635,0,-53.5481	1/2:52:0,35,17:0:0:35,17:1197,597:-142.108,-48.9386,-38.4026,-93.5136,0,-88.3961	1/1:34:0,34,0:0:0:34,0:1194,0:-103.298,-10.235,0,-103.298,-10.235,-103.298	1/1:30:0,30,0:0:0:30,0:1051,0:-91.0114,-9.0309,0,-91.0114,-9.0309,-91.0114	1/1:39:0,39,0:0:0:39,0:1356,0:-118.033,-11.7402,0,-118.033,-11.7402,-118.033	1/1:30:0,30,0:0:0:30,0:1034,0:-90.6089,-9.0309,0,-90.6089,-9.0309,-90.6089	1/1:31:0,31,0:0:0:31,0:1070,0:-93.6299,-9.33193,0,-93.6299,-9.33193,-93.6299	1/2:77:0,44,33:0:0:44,33:1513,1175:-215.917,-96.1206,-82.8753,-120.144,0,-110.21	1/1:40:0,40,0:0:0:40,0:1404,0:-122.006,-12.0412,0,-122.006,-12.0412,-122.006	1/2:79:0,22,57:0:0:22,57:782,2048:-229.974,-167.428,-160.806,-62.8981,0,-45.7394	1/2:47:0,25,22:0:0:25,22:865,769:-131.364,-62.9054,-55.3796,-68.8028,0,-62.1801	1/1:57:0,57,0:0:0:57,0:1966,0:-167.799,-17.1587,0,-167.799,-17.1587,-167.799	1/1:55:0,53,2:0:0:53,2:1837,72:-159.149,-15.9546,0,-153.273,-9.71993,-152.671	1/1:200:0,197,1:0:0:197,1:6849,36:-605.467,-59.3029,0,-602.529,-56.3459,-602.228	1/2:71:0,27,44:0:0:27,44:958,1580:-203.399,-129.242,-121.114,-74.5037,0,-61.2584	1/2:11:0,8,3:0:0:8,3:286,108:-31.1089,-9.17208,-6.76384,-22.2908,0,-21.3877	1/2:137:0,72,65:0:0:72,65:2520,2291:-386.791,-186.87,-165.196,-200.268,0,-180.701	1/2:64:0,27,36:0:0:27,36:963,1296:-180.174,-105.743,-97.6151,-74.4203,0,-63.5832	1/1:72:0,72,0:0:0:72,0:2508,0:-218.685,-21.6742,0,-218.685,-21.6742,-218.685	2/2:7:0,0,7:0:0:0,7:0,243:-22.2075,-22.2075,-22.2075,-2.10721,-2.10721,0	1/1:32:0,31,0:0:0:31,0:1104,0:-95.6376,-9.33193,0,-95.6376,-9.33193,-95.6376	1/2:10:0,7,3:0:0:7,3:249,104:-28.321,-8.79971,-6.6925,-19.8668,0,-18.9637	1/1:39:0,39,0:0:0:39,0:1373,0:-119.511,-11.7402,0,-119.511,-11.7402,-119.511	1/2:49:0,42,7:0:0:42,7:1479,248:-135.691,-20.5487,-7.90545,-115.494,0,-113.387	1/1:117:0,117,0:0:0:117,0:4077,0:-359.464,-35.2205,0,-359.464,-35.2205,-359.464	1/1:98:0,98,0:0:0:98,0:3393,0:-292.148,-29.5009,0,-292.148,-29.5009,-292.148	1/1:29:0,29,0:0:0:29,0:1011,0:-88.0328,-8.72987,0,-88.0328,-8.72987,-88.0328	1/2:7:0,6,1:0:0:6,1:194,36:-18.4635,-3.29724,-1.49106,-15.5197,0,-15.2186	1/2:75:0,24,51:0:0:24,51:840,1817:-213.46,-148.443,-141.218,-65.3587,0,-50.0061	1/1:16:0,16,0:0:0:16,0:568,0:-49.1527,-4.81648,0,-49.1527,-4.81648,-49.1527	1/2:90:0,37,52:0:0:37,52:1237,1844:-246.936,-150.186,-139.048,-96.6906,0,-81.0371	1/2:27:0,20,6:0:0:20,6:688,216:-71.5789,-17.6879,-11.6673,-53.9479,0,-52.1417	1/1:22:0,22,0:0:0:22,0:766,0:-67.311,-6.62266,0,-67.311,-6.62266,-67.311	1/1:64:0,64,0:0:0:64,0:2227,0:-195.324,-19.2659,0,-195.324,-19.2659,-195.324	1/1:67:0,67,0:0:0:67,0:2317,0:-199.985,-20.169,0,-199.985,-20.169,-199.985	1/2:87:0,40,47:0:0:40,47:1423,1688:-250.24,-138.049,-126.008,-112.542,0,-98.3934	1/1:59:0,59,0:0:0:59,0:2048,0:-180.099,-17.7608,0,-180.099,-17.7608,-180.099	1/1:98:0,98,0:0:0:98,0:3414,0:-299.411,-29.5009,0,-299.411,-29.5009,-299.411	1/1:90:0,90,0:0:0:90,0:3142,0:-277.566,-27.0927,0,-277.566,-27.0927,-277.566	1/1:10:0,10,0:0:0:10,0:349,0:-31.007,-3.0103,0,-31.007,-3.0103,-31.007	1/1:92:0,92,0:0:0:92,0:3215,0:-280.118,-27.6948,0,-280.118,-27.6948,-280.118	1/1:18:0,18,0:0:0:18,0:628,0:-55.9573,-5.41854,0,-55.9573,-5.41854,-55.9573	1/2:12:0,7,5:0:0:7,5:240,176:-33.5887,-14.6799,-12.5727,-19.2531,0,-17.748	1/2:56:0,21,35:0:0:21,35:744,1260:-161.056,-103.165,-96.8432,-58.2387,0,-47.7027	1/1:39:0,39,0:0:0:39,0:1364,0:-120.174,-11.7402,0,-120.174,-11.7402,-120.174	1/2:2:0,1,1:0:0:1,1:34,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chr05	21123402	.	A	T	26824.8	PASS	AB=0.539121;ABP=41.7481;AC=46;AF=0.244681;AN=188;AO=1576;CIGAR=1X;DP=6239;DPB=6239;DPRA=0.894253;EPP=3425.25;EPPR=10102.5;GTI=2;LEN=1;MEANALT=1.04082;MQM=59.9975;MQMR=59.9974;NS=94;NUMALT=1;ODDS=0.117776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56108;QR=165920;RO=4659;RPL=0;RPP=3425.25;RPPR=10119.9;RPR=1576;RUN=1;SAF=0;SAP=3425.25;SAR=1576;SRF=2;SRP=10102.5;SRR=4657;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:20,27:20:712:27:968:-73.289,0,-50.2582	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/1:62:35,27:35:1228:27:968:-68.7735,0,-92.1572	0/0:132:132,0:132:4727:0:0:0,-39.736,-425.588	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:35:35,0:35:1224:0:0:0,-10.536,-110.461	0/1:67:18,49:18:644:49:1744:-137.075,0,-38.1216	0/0:152:152,0:152:5415:0:0:0,-45.7566,-487.48	0/1:51:27,24:27:968:24:856:-62.0086,0,-72.0848	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.363	0/1:56:19,37:19:661:37:1296:-100.082,0,-42.9539	0/1:58:31,27:31:1091:27:964:-69.6171,0,-81.039	0/1:77:38,39:38:1346:39:1396:-102.76,0,-98.2594	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:42:42,0:42:1478:0:0:0,-12.6433,-133.313	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:100:49,51:49:1751:51:1823:-134.247,0,-127.77	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.682	0/1:50:14,36:14:504:36:1286:-100.992,0,-30.6466	0/1:66:32,34:32:1148:34:1216:-89.8786,0,-83.7619	0/0:129:129,0:129:4623:0:0:0,-38.8329,-416.232	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:241:241,0:241:8599:0:0:0,-72.5482,-773.907	0/1:159:91,68:91:3264:68:2444:-172.351,0,-246.116	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	0/1:120:51,69:51:1828:69:2472:-186.61,0,-128.677	0/1:106:59,46:59:2093:46:1636:-115.561,0,-156.67	0/0:86:86,0:86:3039:0:0:0,-25.8886,-273.74	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:11:11,0:11:374:0:0:0,-3.31133,-33.9864	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:8:6,2:6:212:2:68:-4.04947,0,-17.0166	0/0:116:116,0:116:4116:0:0:0,-34.9195,-370.626	0/0:144:144,0:144:5107:0:0:0,-43.3483,-459.775	0/0:77:77,0:77:2735:0:0:0,-23.1793,-246.393	0/1:8:7,1:7:248:1:32:-0.791073,0,-20.256	0/1:88:46,42:46:1644:42:1504:-109.164,0,-121.758	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/1:117:57,60:57:2022:60:2129:-156.656,0,-147.031	0/1:40:18,22:18:625:22:760:-56.6747,0,-44.5313	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:160:75,85:75:2692:85:3023:-224.137,0,-194.359	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.144	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:49:49,0:49:1739:0:0:0,-14.7505,-156.794	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:64:63,0:63:2203:0:0:0,-18.9649,-198.174	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:74:39,35:39:1388:35:1256:-91.0691,0,-102.943	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/1:14:10,4:10:351:4:131:-7.89821,0,-27.7123	0/0:86:86,0:86:3048:0:0:0,-25.8886,-274.549	0/1:116:50,66:50:1771:66:2351:-176.929,0,-124.753	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:75:8,66:8:284:66:2364:-190.422,0,-3.30332	0/1:157:75,82:75:2677:82:2896:-213.613,0,-193.912	0/1:81:44,37:44:1576:37:1307:-93.5473,0,-117.748	0/1:39:17,22:17:604:22:775:-58.331,0,-42.9504	0/0:50:48,2:48:1686:2:72:0,-8.21478,-145.186	0/1:75:28,47:28:969:47:1671:-128.099,0,-64.9423	0/1:33:12,21:12:432:21:748:-57.7113,0,-29.2872	0/1:108:52,56:52:1868:56:1975:-145.513,0,-135.888	0/1:80:38,42:38:1360:42:1508:-111.932,0,-98.6182	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/0:149:149,0:149:5311:0:0:0,-44.8535,-478.127	0/0:94:94,0:94:3331:0:0:0,-28.2968,-300.007	0/1:102:54,48:54:1897:48:1716:-124.021,0,-140.298	0/0:88:88,0:88:3151:0:0:0,-26.4906,-283.814	0/1:9:2,7:2:72:7:243:-19.4982,0,-4.12745	0/0:53:53,0:53:1886:0:0:0,-15.9546,-170.017	0/1:52:12,40:12:424:40:1413:-111.812,0,-22.8429	0/0:198:198,0:198:7076:0:0:0,-59.6039,-636.899	0/0:78:77,1:77:2739:1:36:0,-19.8847,-243.155	0/1:48:21,27:21:743:27:960:-72.2668,0,-52.7439	0/0:36:35,0:35:1243:0:0:0,-10.536,-111.814	0/1:95:38,57:38:1347:57:2035:-154.824,0,-92.9316	0/1:30:14,16:14:496:16:567:-42.3298,0,-35.9434	0/0:45:45,0:45:1588:0:0:0,-13.5463,-143.208	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:162:71,91:71:2516:91:3256:-244.494,0,-177.926	0/1:34:11,23:11:381:23:807:-62.7141,0,-24.3856	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:36:34,2:34:1211:2:72:0,-4.00036,-102.459
chr05	21123429	.	A	G	98805.6	PASS	AB=0.452133;ABP=62.2571;AC=142;AF=0.755319;AN=188;AO=4684;CIGAR=1X;DP=6324;DPB=6324;DPRA=0;EPP=10139.5;EPPR=3518.76;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9951;MQMR=59.9976;NS=94;NUMALT=1;ODDS=0.416263;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167024;QR=58754;RO=1639;RPL=6;RPP=10122.1;RPPR=3518.76;RPR=4678;RUN=1;SAF=2;SAP=10156.8;SAR=4682;SRF=0;SRP=3562.05;SRR=1639;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:28,20:28:1000:20:701:-48.9623,0,-75.8659	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:62:27,35:27:972:35:1247:-93.8702,0,-69.134	1/1:134:0,134:0:0:134:4771:-429.546,-40.338,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:37:0,37:0:0:37:1310:-118.199,-11.1381,0	0/1:68:50,18:50:1784:18:648:-38.1818,0,-140.373	1/1:154:0,154:0:0:154:5495:-494.676,-46.3586,0	0/1:53:25,28:25:896:28:1004:-74.7213,0,-65.0058	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:47:0,47:0:0:47:1679:-151.394,-14.1484,0	0/1:54:37,17:37:1332:17:603:-38.3439,0,-103.927	0/1:59:29,30:29:1044:30:1063:-78.2201,0,-76.514	0/1:80:44,36:44:1580:36:1296:-92.8615,0,-118.409	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:61:0,61:0:0:61:2187:-197.095,-18.3628,0	1/1:42:0,42:0:0:42:1497:-135.023,-12.6433,0	1/1:40:0,40:0:0:40:1406:-126.833,-12.0412,0	0/1:98:50,48:50:1777:48:1709:-124.593,0,-130.71	1/1:71:0,71:0:0:71:2535:-228.401,-21.3731,0	0/1:50:36,14:36:1296:14:500:-30.2847,0,-101.892	0/1:68:35,33:35:1251:33:1184:-86.3983,0,-92.4242	1/1:128:0,128:0:0:128:4592:-413.444,-38.5318,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:242:0,241:0:0:241:8594:-773.245,-72.5482,0	0/1:163:70,93:70:2497:93:3315:-249.501,0,-175.913	0/1:30:16,14:16:576:14:500:-36.3053,0,-43.1441	0/1:114:64,50:64:2304:50:1769:-125.174,0,-173.303	0/1:108:49,59:49:1752:59:2104:-157.116,0,-125.453	1/1:86:0,86:0:0:86:3061:-275.718,-25.8886,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:12:0,12:0:0:12:408:-37.0441,-3.61236,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:115:0,115:0:0:115:4072:-366.668,-34.6185,0	1/1:147:0,147:0:0:147:5268:-474.256,-44.2514,0	1/1:77:0,77:0:0:77:2749:-247.651,-23.1793,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:89:44,45:44:1576:45:1599:-117.408,0,-115.34	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:118:62,56:62:2228:56:2004:-145.112,0,-165.262	0/1:40:22,18:22:788:18:615:-43.6266,0,-59.2036	1/1:34:0,34:0:0:34:1187:-107.134,-10.235,0	1/1:70:0,70:0:0:70:2493:-224.621,-21.0721,0	1/1:50:0,50:0:0:50:1774:-159.942,-15.0515,0	0/1:166:90,76:90:3224:76:2707:-193.903,0,-240.411	1/1:70:0,70:0:0:70:2495:-224.802,-21.0721,0	1/1:65:0,65:0:0:65:2313:-208.43,-19.567,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:7:4,3:4:144:3:93:-6.56952,0,-11.2064	1/1:72:0,72:0:0:72:2550:-229.749,-21.6742,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:77:37,40:37:1324:40:1424:-105.278,0,-96.2828	1/1:70:0,70:0:0:70:2503:-225.522,-21.0721,0	0/1:10:1,9:1:36:9:315:-25.6769,0,-0.587975	0/1:14:4,10:4:140:10:360:-28.5299,0,-8.73016	1/1:84:1,83:1:36:83:2961:-263.124,-21.6882,0	0/1:116:67,49:67:2408:49:1752:-123.045,0,-182.057	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:76:68,8:68:2436:8:288:-3.38913,0,-196.617	0/1:166:90,76:90:3221:76:2701:-193.362,0,-240.139	0/1:83:39,44:39:1404:44:1584:-117.866,0,-101.674	0/1:40:22,18:22:792:18:639:-45.797,0,-59.5645	1/1:51:2,49:2:72:49:1755:-151.397,-8.51581,0	0/1:79:50,29:50:1781:29:1040:-70.133,0,-136.789	0/1:35:23,12:23:828:12:432:-28.6851,0,-64.3081	0/1:111:57,54:57:2052:54:1924:-140.023,0,-151.537	0/1:84:45,39:45:1620:39:1382:-99.3908,0,-120.803	0/1:20:8,12:8:288:12:428:-32.8382,0,-20.2468	1/1:62:0,62:0:0:62:2193:-197.635,-18.6639,0	1/1:43:0,43:0:0:43:1539:-138.802,-12.9443,0	1/1:152:2,150:2:72:150:5328:-472.817,-38.9198,0	1/1:93:0,93:0:0:93:3344:-301.176,-27.9958,0	0/1:109:54,55:54:1944:55:1959:-143.765,0,-142.424	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:54:0,54:0:0:54:1899:-171.184,-16.2556,0	0/1:54:42,12:42:1508:12:432:-22.9656,0,-119.759	1/1:198:0,198:0:0:198:7104:-639.417,-59.6039,0	1/1:80:1,79:1:36:79:2809:-249.45,-20.4867,0	0/1:48:28,20:28:1008:20:716:-50.3183,0,-76.5869	1/1:36:0,36:0:0:36:1275:-115.052,-10.8371,0	0/1:99:61,38:61:2164:38:1364:-93.2587,0,-165.223	0/1:31:17,14:17:612:14:491:-35.1884,0,-46.0815	1/1:44:0,44:0:0:44:1567:-141.321,-13.2453,0	1/1:51:0,51:0:0:51:1823:-164.35,-15.3525,0	1/1:49:0,49:0:0:49:1745:-157.332,-14.7505,0	0/1:162:91,71:91:3267:71:2500:-176.482,0,-245.482	0/1:35:23,12:23:820:12:432:-28.6851,0,-63.5865	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:37:2,35:2:72:35:1256:-106.509,-4.30139,0
chr05	21177267	.	ATGT	TTGG,TTGT	205329	PASS	AB=0.48417,0.512021;ABP=12.1536,8.28314;AC=142,46;AF=0.755319,0.244681;AN=188;AO=7669,2168;CIGAR=1X2M1X,1X3M;DP=9862;DPB=9862;DPRA=106.032,1.22599;EPP=16224.6,4667.43;EPPR=0;GTI=4;LEN=4,1;MEANALT=1.86022,2.29825;MQM=41.0142,47.8685;MQMR=0;NS=94;NUMALT=2;ODDS=0.736851;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=271134,77729;QR=0;RO=0;RPL=7619,2163;RPP=16224.6,4667.43;RPPR=0;RPR=50,5;RUN=1,1;SAF=0,0;SAP=16656,4710.76;SAR=7669,2168;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,17,23:0:0:17,23:598,824:-113.382,-66.5511,-61.4335,-47.1768,0,-40.2531	1/1:178:0,177,1:0:0:177,1:6237,26:-536.553,-53.2823,0,-534.53,-51.0003,-534.229	1/2:80:0,36,44:0:0:36,44:1281,1576:-226.522,-126.662,-115.824,-100.207,0,-86.9618	1/1:280:0,280,0:0:0:280,0:9896,0:-864.214,-84.2884,0,-864.214,-84.2884,-864.214	1/1:35:0,34,1:0:0:34,1:1204,36:-103.463,-10.235,0,-100.554,-6.96924,-100.253	1/1:24:0,24,0:0:0:24,0:857,0:-74.4474,-7.22472,0,-74.4474,-7.22472,-74.4474	1/2:138:0,64,74:0:0:64,74:2274,2645:-393.662,-214.654,-195.388,-179.357,0,-157.081	1/1:245:0,245,0:0:0:245,0:8652,0:-746.748,-73.7524,0,-746.748,-73.7524,-746.748	1/2:61:0,38,23:0:0:38,23:1363,803:-168.364,-63.949,-52.5098,-104.755,0,-97.8315	1/1:156:0,153,2:0:0:153,2:5425,72:-470.844,-46.0576,0,-464.985,-40.153,-464.383	1/1:67:0,67,0:0:0:67,0:2391,0:-209.474,-20.169,0,-209.474,-20.169,-209.474	1/2:74:0,41,33:0:0:41,33:1454,1188:-209.406,-95.8118,-83.4695,-113.943,0,-104.009	1/2:108:0,41,66:0:0:41,66:1443,2364:-301.28,-189.23,-176.887,-112.101,0,-92.2333	1/2:107:0,64,42:0:0:64,42:2253,1504:-296.623,-121.374,-102.108,-175.339,0,-162.696	1/1:101:0,101,0:0:0:101,0:3574,0:-312.127,-30.404,0,-312.127,-30.404,-312.127	1/1:58:0,58,0:0:0:58,0:2066,0:-176.628,-17.4597,0,-176.628,-17.4597,-176.628	1/1:83:0,83,0:0:0:83,0:2920,0:-252.32,-24.9855,0,-252.32,-24.9855,-252.32	1/1:70:0,70,0:0:0:70,0:2487,0:-215.454,-21.0721,0,-215.454,-21.0721,-215.454	1/1:55:0,55,0:0:0:55,0:1951,0:-168.58,-16.5567,0,-168.58,-16.5567,-168.58	1/2:284:0,143,141:0:0:143,141:5044,5068:-807.848,-410.382,-367.335,-397.815,0,-355.37	1/1:126:0,126,0:0:0:126,0:4473,0:-382.576,-37.9298,0,-382.576,-37.9298,-382.576	1/2:69:0,13,55:0:0:13,55:450,1980:-196.309,-160.638,-156.725,-35.7157,0,-19.1591	1/2:66:0,31,35:0:0:31,35:1086,1256:-187.145,-101.677,-92.3446,-85.8159,0,-75.2799	1/1:189:0,187,0:0:0:187,0:6619,0:-567.527,-56.2926,0,-567.527,-56.2926,-567.527	1/1:59:0,59,0:0:0:59,0:2088,0:-180.426,-17.7608,0,-180.426,-17.7608,-180.426	1/1:367:0,366,1:0:0:366,1:12916,36:-1136.72,-110.177,0,-1133.79,-106.889,-1133.49	1/2:197:0,102,95:0:0:102,95:3621,3398:-549.706,-274.545,-243.84,-275.505,0,-246.907	1/2:38:0,17,21:0:0:17,21:596,748:-106.763,-60.2573,-55.1398,-46.8493,0,-40.5277	1/2:325:0,154,171:0:0:154,171:5460,6133:-932.883,-498.297,-451.939,-434.937,0,-383.461	1/2:129:0,72,56:0:0:72,56:2558,1998:-355.811,-159.945,-138.271,-195.913,0,-179.055	1/1:110:0,110,0:0:0:110,0:3890,0:-339.446,-33.1133,0,-339.446,-33.1133,-339.446	1/2:4:0,2,2:0:0:2,2:72,72:-11.7684,-6.1575,-5.55544,-5.96147,0,-5.35941	1/1:4:0,4,0:0:0:4,0:143,0:-12.4964,-1.20412,0,-12.4964,-1.20412,-12.4964	1/2:9:0,5,4:0:0:5,4:180,144:-25.9602,-11.9254,-10.4202,-14.3855,0,-13.1814	1/1:4:0,4,0:0:0:4,0:137,0:-12.2547,-1.20412,0,-12.2547,-1.20412,-12.2547	1/1:1:0,1,0:0:0:1,0:25,0:-2.48652,-0.30103,0,-2.48652,-0.30103,-2.48652	1/1:252:0,251,1:0:0:251,1:8908,36:-782.369,-75.5585,0,-779.439,-72.2703,-779.138	1/1:163:0,163,0:0:0:163,0:5755,0:-497.74,-49.0679,0,-497.74,-49.0679,-497.74	1/1:59:0,59,0:0:0:59,0:2094,0:-181.118,-17.7608,0,-181.118,-17.7608,-181.118	2/2:1:0,0,1:0:0:0,1:0,36:-3.56681,-3.56681,-3.56681,-0.30103,-0.30103,0	1/2:138:0,64,74:0:0:64,74:2285,2660:-391.749,-214.754,-195.488,-177.343,0,-155.066	1/1:33:0,32,0:0:0:32,0:1122,0:-95.2176,-9.63296,0,-95.2176,-9.63296,-95.2176	1/2:117:0,58,58:0:0:58,58:2073,2076:-328.891,-167.343,-149.883,-161.621,0,-144.162	1/2:105:0,42,62:0:0:42,62:1508,2220:-297.215,-179.231,-166.587,-118.004,0,-99.3397	1/1:89:0,89,0:0:0:89,0:3154,0:-275.296,-26.7917,0,-275.296,-26.7917,-275.296	1/1:102:0,101,1:0:0:101,1:3563,36:-314.355,-30.404,0,-311.419,-27.1078,-311.118	1/1:98:0,98,0:0:0:98,0:3436,0:-296.492,-29.5009,0,-296.492,-29.5009,-296.492	1/2:201:0,103,98:0:0:103,98:3620,3524:-569.997,-285.088,-254.082,-285.258,0,-255.757	1/1:125:0,123,0:0:0:123,0:4351,0:-380.555,-37.0267,0,-380.555,-37.0267,-380.555	1/1:156:0,155,1:0:0:155,1:5465,36:-477.989,-46.6597,0,-475.054,-43.365,-474.753	1/1:150:0,149,0:0:0:149,0:5262,0:-463.562,-44.8535,0,-463.562,-44.8535,-463.562	1/2:10:0,9,1:0:0:9,1:321,36:-28.7022,-3.27774,-0.568467,-25.7813,0,-25.4803	1/1:75:0,75,0:0:0:75,0:2676,0:-231.233,-22.5773,0,-231.233,-22.5773,-231.233	1/1:32:0,32,0:0:0:32,0:1140,0:-100.071,-9.63296,0,-100.071,-9.63296,-100.071	1/2:21:0,10,11:0:0:10,11:356,396:-59.9614,-32.1738,-29.1635,-28.1359,0,-24.8245	1/2:109:0,48,61:0:0:48,61:1698,2190:-308.655,-176.848,-162.399,-132.152,0,-113.789	1/1:34:0,34,0:0:0:34,0:1202,0:-105.633,-10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chr05	21177280	.	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chr05	21271582	.	C	T	7101.55	PASS	AB=0.47119;ABP=65.6948;AC=96;AF=0.510638;AN=188;AO=4123;CIGAR=1X;DP=8733;DPB=8733;DPRA=93.8925;EPP=8955.99;EPPR=10009.2;GTI=36;LEN=1;MEANALT=1.02151;MQM=19.0209;MQMR=59.9766;NS=94;NUMALT=1;ODDS=0.201044;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147437;QR=164868;RO=4608;RPL=0;RPP=8955.99;RPPR=10009.2;RPR=4123;RUN=1;SAF=4123;SAP=8955.99;SAR=0;SRF=4608;SRP=10009.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:22,19:22:780:19:676:-17.8598,0,-58.1808	0/1:55:27,28:27:968:28:1004:-22.9128,0,-70.8807	0/1:131:87,44:87:3116:44:1580:-23.0152,0,-241.232	0/1:204:108,96:108:3848:96:3403:-108.976,0,-285.108	0/1:55:27,28:27:952:28:1000:-28.7953,0,-69.4385	0/1:7:5,2:5:168:2:72:-0.924785,0,-13.3437	0/1:67:38,29:38:1364:29:1040:-32.5455,0,-102.892	0/1:179:73,106:73:2620:106:3796:-98.0371,0,-182.163	0/1:68:41,27:41:1452:27:964:-17.5574,0,-110.506	0/1:131:56,75:56:2004:75:2688:-96.1168,0,-141.199	0/1:47:19,28:19:680:28:1008:-35.9162,0,-47.3808	0/1:90:64,26:64:2300:26:936:-8.88135,0,-180.168	0/1:85:62,23:62:2232:23:824:-7.50949,0,-175.556	0/1:70:46,24:46:1644:24:864:-17.4849,0,-127.177	0/1:79:40,39:40:1432:39:1404:-45.6244,0,-105.396	0/1:66:29,37:29:1036:37:1332:-39.582,0,-73.6859	0/1:40:19,21:19:680:21:752:-17.8273,0,-49.488	0/1:43:21,22:21:752:22:788:-18.8062,0,-55.062	0/1:38:25,13:25:900:13:468:-7.39114,0,-69.8819	0/1:176:96,80:96:3424:80:2872:-90.6733,0,-255.394	0/1:185:66,119:66:2352:119:4261:-135.224,0,-156.249	0/1:97:72,25:72:2580:25:900:-20.1393,0,-203.249	0/1:119:85,34:85:3048:34:1224:-24.7189,0,-238.724	0/1:51:23,28:23:828:28:1008:-29.839,0,-59.3011	0/1:93:52,41:52:1852:41:1468:-39.61,0,-138.964	0/1:331:147,184:147:5260:184:6588:-260.958,0,-373.896	0/1:147:90,57:90:3224:57:2044:-46.3036,0,-246.131	0/1:37:20,17:20:716:17:604:-16.1058,0,-53.6296	0/1:178:104,74:104:3728:74:2656:-91.8143,0,-282.137	0/1:106:64,42:64:2296:42:1477:-37.1581,0,-174.992	0/1:146:82,63:82:2936:63:2241:-69.106,0,-220.55	0/1:10:3,7:3:108:7:252:-7.83167,0,-7.06487	0/1:21:10,11:10:360:11:392:-11.6021,0,-26.4227	1/1:3:0,3:0:0:3:108:-4.4682,-0.90309,0	1/1:17:1,16:1:36:16:572:-19.5349,-1.51924,0	0/1:9:6,3:6:216:3:108:-1.75893,0,-17.0812	0/1:281:125,156:125:4484:156:5586:-221.677,0,-319.139	0/1:165:85,80:85:3048:80:2834:-78.2231,0,-224.879	0/1:40:15,25:15:536:25:891:-23.9981,0,-36.5336	1/1:3:0,3:0:0:3:108:-5.02118,-0.90309,0	0/1:108:71,37:71:2540:37:1309:-26.6803,0,-196.338	0/1:23:7,16:7:252:16:576:-18.6315,0,-16.1053	0/1:176:98,78:98:3488:78:2792:-71.8903,0,-261.152	0/1:47:35,12:35:1240:12:432:-7.17915,0,-97.756	0/1:59:40,19:40:1432:19:680:-16.4416,0,-111.417	0/1:109:51,58:51:1824:58:2069:-80.5427,0,-131.629	0/1:124:61,63:61:2184:63:2245:-53.1721,0,-159.498	0/1:164:108,56:108:3876:56:1999:-50.5973,0,-299.665	0/1:137:63,74:63:2260:74:2648:-90.6828,0,-162.422	0/1:131:74,57:74:2656:57:2033:-62.585,0,-199.851	0/1:133:74,59:74:2640:59:2116:-75.5385,0,-197.81	0/1:8:2,6:2:72:6:216:-8.35337,0,-4.42848	0/1:140:66,74:66:2368:74:2660:-62.9451,0,-171.234	0/1:109:54,55:54:1932:55:1975:-74.484,0,-141.344	0/1:3:2,1:2:72:1:36:-0.692697,0,-5.93363	0/1:94:59,35:59:2116:35:1237:-28.0233,0,-162.412	0/1:45:22,23:22:788:23:824:-27.8176,0,-57.6984	1/1:2:0,2:0:0:2:72:-4.14799,-0.60206,0	0/1:9:3,6:3:108:6:212:-10.1966,0,-7.3659	0/1:40:18,22:18:648:22:788:-23.636,0,-46.6107	0/1:128:83,45:83:2964:45:1620:-42.6172,0,-228.332	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:206:143,63:143:5140:63:2256:-60.3538,0,-400.727	0/1:163:101,62:101:3632:62:2224:-61.5773,0,-278.016	0/1:55:30,25:30:1080:25:900:-23.7929,0,-80.9566	0/1:80:56,24:56:2000:24:864:-18.7303,0,-156.191	0/1:268:89,179:89:3156:179:6367:-237.034,0,-203.274	0/1:126:89,37:89:3196:37:1332:-28.16,0,-249.933	0/1:16:11,5:11:392:5:180:-3.4326,0,-30.8036	0/0:12:10,2:10:356:2:72:0,-0.580365,-29.3493	0/1:52:31,21:31:1108:21:756:-25.8263,0,-84.3774	0/1:26:16,10:16:576:10:356:-9.99449,0,-44.3482	0/1:129:65,63:65:2320:63:2252:-51.4019,0,-170.29	0/1:97:42,55:42:1504:55:1961:-49.844,0,-106.455	0/1:138:53,85:53:1900:85:3014:-95.1789,0,-129.736	0/1:198:75,123:75:2684:123:4412:-159.609,0,-182.201	0/1:89:53,36:53:1900:36:1292:-26.8735,0,-144.478	0/1:127:63,64:63:2260:64:2284:-55.6231,0,-165.432	0/1:14:11,3:11:384:3:108:-0.253783,0,-30.6803	0/1:99:45,54:45:1608:54:1921:-56.8307,0,-115.208	0/1:92:56,36:56:2004:36:1277:-22.7149,0,-152.939	0/1:253:108,145:108:3872:145:5181:-183.431,0,-272.514	0/1:116:60,56:60:2152:56:2008:-64.5469,0,-159.028	0/1:50:34,16:34:1216:16:572:-14.5174,0,-94.6951	0/1:38:16,22:16:568:22:788:-28.1344,0,-40.0127	0/1:120:72,48:72:2576:48:1714:-49.5842,0,-195.966	0/1:25:16,9:16:568:9:324:-5.4694,0,-43.9261	0/1:103:45,58:45:1612:58:2076:-53.2154,0,-114.364	0/1:60:28,32:28:1004:32:1152:-28.0564,0,-72.6141	0/1:43:15,28:15:540:28:996:-32.9004,0,-35.9922	0/1:78:50,28:50:1792:28:1004:-21.8806,0,-137.995	0/1:51:31,20:31:1116:20:716:-20.4628,0,-85.3992	0/1:211:98,113:98:3444:113:4018:-136.185,0,-246.661	0/1:97:49,48:49:1752:48:1728:-56.1348,0,-128.764
chr05	21271602	.	C	G	80904.1	PASS	AB=0.532247;ABP=80.5958;AC=92;AF=0.489362;AN=188;AO=4584;CIGAR=1X;DP=8626;DPB=8626;DPRA=40.5918;EPP=9931;EPPR=8771.42;GTI=37;LEN=1;MEANALT=1.04396;MQM=59.9959;MQMR=19.0349;NS=94;NUMALT=1;ODDS=0.0544973;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163754;QR=142761;RO=4038;RPL=3;RPP=9931;RPPR=8771.42;RPR=4581;RUN=1;SAF=4584;SAP=9957.04;SAR=0;SRF=4038;SRP=8771.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:16,23:16:572:23:828:-63.1039,0,-12.3471	0/1:52:27,25:27:960:25:897:-65.397,0,-22.3682	0/1:131:44,87:44:1551:87:3124:-241.951,0,-22.9653	0/1:203:94,109:94:3319:109:3893:-289.456,0,-105.863	0/1:57:29,28:29:1019:28:1004:-73.5172,0,-29.7494	0/1:7:2,5:2:72:5:180:-14.4449,0,-0.924785	0/1:65:27,37:27:964:37:1309:-98.5617,0,-28.6193	0/1:178:105,73:105:3696:73:2595:-180.216,0,-96.7607	0/1:69:28,41:28:990:41:1453:-110.294,0,-18.2941	0/1:127:72,55:72:2555:55:1943:-136.913,0,-92.2695	0/1:44:27,17:27:948:17:608:-41.8067,0,-34.9491	0/1:90:26,64:26:907:64:2280:-178.369,0,-8.82862	0/1:84:23,61:23:820:61:2175:-170.729,0,-7.80483	0/1:68:23,45:23:824:45:1604:-124.18,0,-16.6425	0/1:80:39,41:39:1392:41:1464:-107.974,0,-45.2838	0/1:64:35,29:35:1178:29:1023:-73.1158,0,-36.599	0/1:39:21,18:21:741:18:636:-45.8279,0,-18.0283	0/1:42:21,21:21:739:21:746:-54.8213,0,-17.6398	0/1:37:13,24:13:444:24:852:-65.8623,0,-7.56449	0/1:177:80,97:80:2856:97:3476:-259.769,0,-90.321	0/1:181:116,65:116:4130:65:2328:-155.293,0,-131.894	0/1:96:25,71:25:880:71:2540:-199.952,0,-20.3305	0/1:119:32,87:32:1152:87:3105:-243.853,0,-21.313	0/1:51:29,22:29:1024:22:792:-56.2531,0,-32.8483	0/1:96:42,54:42:1473:54:1923:-144.447,0,-38.5638	0/1:324:180,144:180:6377:144:5176:-368.444,0,-254.72	0/1:145:54,91:54:1924:91:3228:-247.092,0,-43.1107	0/1:37:17,20:17:557:20:720:-53.9907,0,-15.7944	0/1:174:72,102:72:2541:102:3656:-276.864,0,-88.7258	0/1:105:42,63:42:1491:63:2260:-172.054,0,-38.0665	0/1:144:62,82:62:2195:82:2923:-219.956,0,-68.6678	0/1:10:7,3:7:243:3:108:-7.06487,0,-7.82375	0/1:19:10,9:10:356:9:324:-23.7863,0,-10.5902	0/0:3:3,0:3:108:0:0:0,-0.90309,-4.4682	0/0:17:16,1:16:572:1:36:0,-1.51923,-19.5349	0/1:9:3,6:3:104:6:212:-16.7155,0,-1.75306	0/1:277:154,122:154:5425:122:4368:-309.85,0,-218.324	0/1:165:81,84:81:2878:84:3011:-221.551,0,-80.2252	0/1:40:25,15:25:888:15:536:-36.5336,0,-24.0065	0/0:3:3,0:3:108:0:0:0,-0.90309,-5.02118	0/1:108:37,71:37:1307:71:2523:-194.808,0,-26.788	0/1:23:16,7:16:564:7:252:-16.1053,0,-18.6096	0/1:172:75,97:75:2651:97:3471:-260.825,0,-70.4151	0/1:46:11,35:11:392:35:1251:-99.0469,0,-5.85349	0/1:60:20,40:20:712:40:1420:-110.036,0,-17.9168	0/1:109:59,50:59:2091:50:1792:-128.75,0,-82.6166	0/1:117:60,57:60:2131:57:2037:-148.381,0,-51.4778	0/1:164:56,108:56:1977:108:3860:-298.227,0,-50.4253	0/1:136:74,62:74:2604:62:2215:-158.674,0,-90.9947	0/1:128:58,70:58:2059:70:2512:-187.8,0,-66.8295	0/1:131:59,72:59:2108:72:2579:-192.924,0,-76.0968	0/1:8:6,2:6:216:2:72:-4.42848,0,-8.35337	0/1:139:73,66:73:2594:66:2357:-170.544,0,-63.2773	0/1:108:54,54:54:1903:54:1925:-141.015,0,-72.578	0/1:2:1,1:1:36:1:36:-2.99621,0,-0.993727	0/1:92:34,58:34:1212:58:2084:-160.135,0,-27.3319	0/1:46:24,22:24:839:22:792:-57.7583,0,-29.2034	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.18315	0/1:8:5,3:5:176:3:108:-7.66693,0,-8.53602	0/1:40:22,18:22:775:18:648:-46.6107,0,-23.5872	0/1:124:44,80:44:1572:80:2872:-221.389,0,-43.3105	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:203:62,141:62:2190:141:5040:-392.638,0,-59.0377	0/1:165:62,103:62:2196:103:3696:-283.172,0,-60.8816	0/1:56:24,31:24:847:31:1108:-83.1146,0,-21.7829	0/1:79:24,55:24:856:55:1968:-153.614,0,-19.003	0/1:262:170,92:170:6005:92:3284:-216.911,0,-223.412	0/1:125:38,87:38:1347:87:3116:-243.038,0,-29.971	0/1:16:5,11:5:180:11:392:-30.8036,0,-3.4326	1/1:11:1,10:1:36:10:360:-31.1485,-1.71554,0	0/1:48:19,29:19:680:29:1044:-79.8254,0,-23.0788	0/1:25:10,15:10:352:15:536:-41.0491,0,-10.2893	0/1:125:61,64:61:2160:64:2288:-168.553,0,-50.3455	0/1:95:54,41:54:1895:41:1476:-104.538,0,-49.0348	0/1:138:84,54:84:2975:54:1930:-132.434,0,-93.7269	0/1:200:123,77:123:4328:77:2723:-185.106,0,-158.643	0/1:85:33,52:33:1155:52:1828:-139.21,0,-21.9073	0/1:126:62,64:62:2198:64:2266:-166.27,0,-51.2012	0/1:14:3,11:3:108:11:392:-31.4056,0,-0.253783	0/1:101:54,47:54:1897:47:1692:-122.163,0,-56.2336	0/1:89:34,55:34:1208:55:1976:-151.323,0,-21.2786	0/1:250:140,110:140:4936:110:3927:-278.365,0,-175.263	0/1:113:53,60:53:1863:60:2151:-159.84,0,-59.9351	0/1:49:15,34:15:527:34:1216:-94.9961,0,-12.967	0/1:36:20,16:20:720:16:563:-40.1621,0,-25.1698	0/1:116:45,71:45:1599:71:2528:-192.852,0,-45.3907	0/1:26:9,16:9:320:16:570:-43.7474,0,-5.12398	0/1:102:58,44:58:2011:44:1561:-110.075,0,-53.1367	0/1:59:31,28:31:1103:28:1004:-72.9151,0,-26.8901	0/1:42:27,15:27:942:15:540:-36.2933,0,-31.5047	0/1:79:29,50:29:1027:50:1787:-137.331,0,-24.3368	0/1:51:20,31:20:703:31:1087:-82.7859,0,-20.3926	0/1:214:107,107:107:3790:107:3813:-278.947,0,-125.135	0/1:95:47,48:47:1679:48:1714:-125.948,0,-54.8713
chr05	21271615	.	A	C	6476.82	PASS	AB=0.466238;ABP=87.6149;AC=96;AF=0.510638;AN=188;AO=4009;CIGAR=1X;DP=8581;DPB=8581;DPRA=92.2581;EPP=8699.76;EPPR=2913.85;GTI=37;LEN=1;MEANALT=1.04301;MQM=18.9743;MQMR=59.9792;NS=94;NUMALT=1;ODDS=0.215489;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140317;QR=163431;RO=4566;RPL=4008;RPP=8699.76;RPPR=2913.85;RPR=1;RUN=1;SAF=4009;SAP=8708.44;SAR=0;SRF=4566;SRP=9917.95;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:24,19:24:860:19:668:-15.4335,0,-64.7775	0/1:53:26,27:26:936:27:955:-22.0474,0,-68.6049	0/1:128:84,44:84:3016:44:1528:-23.6764,0,-233.138	0/1:200:106,94:106:3788:94:3250:-106.118,0,-280.913	0/1:57:29,28:29:1028:28:971:-28.1084,0,-75.6045	0/1:7:5,2:5:180:2:72:-0.924785,0,-14.4449	0/1:63:37,26:37:1320:26:910:-27.3008,0,-100.137	0/1:181:75,106:75:2688:106:3676:-96.9117,0,-187.678	0/1:70:41,29:41:1472:29:1032:-19.4633,0,-111.704	0/1:130:56,72:56:2012:72:2521:-91.3288,0,-142.617	0/1:45:19,26:19:676:26:890:-32.5246,0,-47.6216	0/1:89:64,25:64:2292:25:857:-7.6491,0,-179.75	0/1:82:59,23:59:2120:23:812:-8.3955,0,-166.384	0/1:67:43,24:43:1521:24:813:-18.0184,0,-117.012	0/1:80:40,40:40:1432:40:1381:-46.8397,0,-105.095	0/1:62:28,34:28:1004:34:1170:-35.6374,0,-72.012	0/1:38:19,19:19:675:19:640:-15.4066,0,-49.6378	0/1:42:21,21:21:756:21:722:-17.6029,0,-55.724	0/1:39:25,14:25:900:14:472:-8.3873,0,-69.5808	0/1:172:93,79:93:3344:79:2801:-89.2707,0,-249.399	0/1:187:66,121:66:2353:121:4271:-137.853,0,-155.735	0/1:92:68,24:68:2436:24:856:-19.6357,0,-191.801	0/1:118:84,34:84:3012:34:1203:-25.1128,0,-235.787	0/1:50:23,27:23:815:27:918:-29.8477,0,-58.6193	0/1:93:53,40:53:1895:40:1389:-36.212,0,-142.832	0/1:316:144,172:144:5126:172:6031:-240.401,0,-366.356	0/1:145:90,55:90:3236:55:1919:-44.0281,0,-247.811	0/1:36:19,17:19:684:17:574:-16.3144,0,-51.0532	0/1:175:106,69:106:3808:69:2439:-82.6481,0,-290.236	0/1:106:65,41:65:2324:41:1416:-34.9611,0,-176.81	0/1:142:80,62:80:2864:62:2162:-68.1578,0,-215.251	0/1:9:3,6:3:108:6:212:-6.51535,0,-7.3659	0/1:20:10,10:10:356:10:351:-10.2582,0,-26.3606	1/1:3:0,3:0:0:3:108:-4.4682,-0.90309,0	1/1:17:1,16:1:36:16:567:-19.5151,-1.51924,0	0/1:9:6,3:6:208:3:108:-1.75893,0,-16.3498	0/1:274:121,153:121:4335:153:5346:-216.61,0,-307.842	0/1:168:86,82:86:3080:82:2916:-80.5397,0,-226.855	0/1:41:15,26:15:536:26:887:-24.9834,0,-36.2326	1/1:2:0,2:0:0:2:72:-3.40723,-0.60206,0	0/1:105:71,34:71:2536:34:1190:-22.8093,0,-196.878	0/1:23:7,16:7:252:16:564:-18.6078,0,-16.1053	0/1:170:97,73:97:3453:73:2518:-65.2846,0,-259.807	0/1:48:36,12:36:1276:12:405:-6.62145,0,-100.694	0/1:59:40,19:40:1436:19:667:-16.3662,0,-111.777	0/1:106:49,57:49:1760:57:2027:-79.6422,0,-126.775	0/1:119:58,61:58:2076:61:2149:-52.2392,0,-151.288	0/1:163:106,55:106:3812:55:1950:-49.2448,0,-294.45	0/1:133:61,72:61:2184:72:2529:-88.0934,0,-156.789	0/1:128:73,55:73:2616:55:1908:-59.4972,0,-197.156	0/1:131:74,57:74:2633:57:2007:-71.7028,0,-197.781	0/1:8:2,6:2:72:6:203:-8.27704,0,-4.42848	0/1:135:66,69:66:2360:69:2430:-57.1728,0,-172.02	0/1:107:54,52:54:1917:52:1852:-68.876,0,-140.536	0/1:2:1,1:1:36:1:36:-0.993727,0,-2.99621	0/1:95:60,35:60:2152:35:1231:-27.81,0,-165.349	0/1:46:23,23:23:820:23:820:-27.5024,0,-60.2751	1/1:2:0,2:0:0:2:72:-4.14799,-0.60206,0	0/1:8:3,5:3:108:5:180:-7.63425,0,-7.66693	0/1:40:18,22:18:648:22:770:-23.5564,0,-46.6107	0/1:126:80,46:80:2872:46:1570:-44.7573,0,-220.787	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:203:141,62:141:5048:62:2170:-58.6575,0,-393.356	0/1:165:103,62:103:3689:62:2170:-60.5375,0,-282.541	0/1:57:32,25:32:1133:25:887:-23.1454,0,-85.1179	0/1:79:55,24:55:1968:24:856:-19.003,0,-153.614	0/1:256:90,166:90:3220:166:5824:-217.988,0,-212.469	0/1:124:87,37:87:3108:37:1307:-28.4675,0,-242.62	0/1:16:11,5:11:392:5:176:-3.42343,0,-30.8036	0/0:11:9,2:9:324:2:72:0,-0.279335,-26.4739	0/1:49:29,20:29:1044:20:712:-24.7206,0,-79.5243	0/1:24:15,9:15:536:9:312:-8.78247,0,-41.3501	0/1:127:65,62:65:2319:62:2190:-51.59,0,-170.739	0/1:98:42,56:42:1504:56:1952:-50.5075,0,-106.154	0/1:138:54,84:54:1944:84:2991:-93.7595,0,-133.694	0/1:198:76,122:76:2736:122:4327:-157.258,0,-186.878	0/1:86:52,34:52:1845:34:1205:-22.9948,0,-140.431	0/1:120:60,60:60:2156:60:2115:-50.0392,0,-158.183	0/1:14:11,3:11:392:3:108:-0.253783,0,-31.4056	0/1:99:46,53:46:1633:53:1853:-55.2418,0,-117.455	0/1:90:56,34:56:2003:34:1166:-20.8076,0,-153.45	0/1:243:105,138:105:3761:138:4825:-173.222,0,-265.537	0/1:109:57,52:57:2048:52:1824:-59.3392,0,-151.779	0/1:49:33,16:33:1184:16:553:-14.6756,0,-92.1178	0/1:37:16,21:16:576:21:737:-26.4267,0,-41.0369	0/1:119:72,47:72:2580:47:1629:-47.5935,0,-196.627	0/1:26:17,9:17:608:9:312:-5.15236,0,-47.2252	0/1:102:45,57:45:1608:57:1974:-51.7792,0,-114.305	0/1:60:28,32:28:1004:32:1111:-27.8926,0,-72.6141	0/1:41:14,27:14:500:27:879:-31.4618,0,-32.9939	0/1:77:48,29:48:1724:29:1009:-25.0487,0,-132.266	0/1:49:29,20:29:1040:20:702:-20.9566,0,-79.1639	0/1:214:105,108:105:3753:108:3790:-126.357,0,-273.489	0/1:95:49,46:49:1764:46:1615:-52.982,0,-130.446
chr05	21271622	.	T	G	7086.7	PASS	AB=0.471544;ABP=64.0607;AC=96;AF=0.510638;AN=188;AO=4118;CIGAR=1X;DP=8717;DPB=8717;DPRA=93.7204;EPP=8936.45;EPPR=9950.56;GTI=34;LEN=1;MEANALT=1.02151;MQM=18.9942;MQMR=59.9558;NS=94;NUMALT=1;ODDS=0.183444;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147220;QR=164531;RO=4597;RPL=4117;RPP=8936.45;RPPR=9950.56;RPR=1;RUN=1;SAF=4118;SAP=8945.13;SAR=0;SRF=4597;SRP=9985.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:25,18:25:896:18:640:-13.0556,0,-67.1576	0/1:55:27,28:27:964:28:1004:-22.9168,0,-69.1541	0/1:130:86,44:86:3084:44:1580:-23.3162,0,-238.654	0/1:202:108,94:108:3859:94:3363:-106.271,0,-286.697	0/1:57:27,29:27:972:29:1044:-29.9175,0,-70.7251	0/1:7:5,2:5:180:2:72:-0.924785,0,-14.4449	0/1:67:38,29:38:1346:29:1040:-32.5455,0,-101.27	0/1:186:77,109:77:2760:109:3907:-100.23,0,-192.65	0/1:69:40,29:40:1432:29:1036:-19.77,0,-108.407	0/1:130:54,76:54:1944:76:2732:-98.7329,0,-136.102	0/1:47:19,28:19:684:28:1004:-35.902,0,-47.7419	0/1:89:64,25:64:2288:25:892:-8.18387,0,-179.39	0/1:83:59,24:59:2108:24:855:-9.52799,0,-165.004	0/1:69:45,24:45:1616:24:846:-17.7064,0,-124.959	0/1:80:40,40:40:1432:40:1427:-47.0387,0,-105.095	0/1:65:28,37:28:1000:37:1310:-39.7945,0,-70.7484	0/1:40:19,21:19:672:21:748:-17.8176,0,-48.7656	0/1:43:21,22:21:756:22:792:-18.8119,0,-55.4229	0/1:39:25,14:25:900:14:504:-8.52632,0,-69.5808	0/1:177:97,80:97:3472:80:2863:-89.7111,0,-258.92	0/1:188:65,123:65:2306:123:4391:-140.857,0,-151.204	0/1:96:71,25:71:2533:25:896:-20.4184,0,-199.321	0/1:118:85,33:85:3048:33:1184:-23.5674,0,-239.027	0/1:50:23,27:23:824:27:964:-30.1273,0,-59.4318	0/1:94:53,41:53:1904:41:1472:-37.689,0,-143.341	0/1:330:146,184:146:5221:184:6569:-260.76,0,-370.687	0/1:147:90,57:90:3194:57:2040:-46.2946,0,-243.43	0/1:36:19,17:19:684:17:612:-16.4216,0,-51.0532	0/1:181:106,75:106:3803:75:2677:-92.5736,0,-287.98	0/1:106:65,41:65:2332:41:1464:-35.3427,0,-178.23	0/1:146:84,62:84:2971:62:2211:-67.2341,0,-223.042	0/1:10:3,7:3:108:7:252:-7.83167,0,-7.06487	0/1:20:9,11:9:324:11:384:-11.885,0,-23.4853	1/1:3:0,3:0:0:3:108:-4.4682,-0.90309,0	1/1:16:1,15:1:36:15:540:-18.1044,-1.21821,0	0/1:9:6,3:6:212:3:108:-1.75893,0,-16.7155	0/1:277:124,153:124:4448:153:5462:-216.854,0,-317.104	0/1:166:84,82:84:3012:82:2912:-81.4997,0,-221.34	0/1:39:14,25:14:504:25:888:-24.3075,0,-33.9579	1/1:3:0,3:0:0:3:104:-5.01187,-0.90309,0	0/1:105:69,35:69:2480:35:1260:-24.6463,0,-191.959	0/1:23:7,16:7:252:16:568:-18.6135,0,-16.1053	0/1:175:95,80:95:3420:80:2876:-75.4462,0,-255.332	0/1:47:35,12:35:1260:12:432:-7.17915,0,-99.5571	0/1:58:39,19:39:1385:19:676:-16.7284,0,-107.487	0/1:110:50,60:50:1792:60:2141:-83.2657,0,-128.079	0/1:120:57,63:57:2040:63:2264:-54.4833,0,-147.748	0/1:162:107,55:107:3825:55:1967:-49.3871,0,-295.679	0/1:135:63,72:63:2252:72:2559:-87.7916,0,-162.304	0/1:131:73,58:73:2620:58:2069:-64.3754,0,-196.612	0/1:133:74,59:74:2649:59:2112:-75.5244,0,-198.617	0/1:8:2,6:2:72:6:216:-8.35337,0,-4.42848	0/1:140:66,74:66:2372:74:2647:-64.4492,0,-171.593	0/1:111:54,57:54:1923:57:2052:-77.6619,0,-139.932	0/1:3:2,1:2:72:1:36:-0.692697,0,-5.93363	0/1:94:59,35:59:2120:35:1247:-28.1471,0,-162.772	0/1:48:23,25:23:805:25:878:-30.3731,0,-58.3181	1/1:2:0,2:0:0:2:68:-4.12491,-0.60206,0	0/1:9:3,6:3:108:6:216:-10.2188,0,-7.3659	0/1:39:17,22:17:612:22:788:-23.9371,0,-43.6733	0/1:125:78,47:78:2791:47:1680:-48.3804,0,-213.801	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:205:141,64:141:5060:64:2288:-62.5772,0,-393.832	0/1:164:102,62:102:3656:62:2228:-61.2904,0,-279.875	0/1:58:33,25:33:1169:25:900:-22.8898,0,-88.0555	0/1:81:57,24:57:2040:24:860:-18.4151,0,-159.489	0/1:271:94,177:94:3343:177:6303:-233.282,0,-219.316	0/1:127:89,38:89:3165:38:1368:-29.4724,0,-246.844	0/1:16:11,5:11:396:5:180:-3.4326,0,-31.1663	0/0:12:10,2:10:360:2:68:0,-0.586344,-29.7183	0/1:51:31,20:31:1101:20:720:-24.1625,0,-84.0458	0/1:24:14,10:14:504:10:360:-10.6108,0,-38.4734	0/1:126:64,62:64:2285:62:2207:-51.4797,0,-167.98	0/1:93:41,52:41:1472:52:1860:-46.8296,0,-104.78	0/1:138:54,84:54:1905:84:3024:-93.8531,0,-130.181	0/1:204:78,126:78:2781:126:4516:-162.983,0,-189.119	0/1:83:49,34:49:1756:34:1224:-24.0052,0,-133.339	0/1:124:63,61:63:2268:61:2153:-50.3416,0,-167.054	0/1:14:11,3:11:387:3:108:-0.253783,0,-30.9515	0/1:100:47,53:47:1688:53:1900:-55.0634,0,-122.104	0/1:92:56,36:56:2016:36:1261:-22.7345,0,-154.018	0/1:252:109,143:109:3908:143:5100:-179.126,0,-276.053	0/1:116:59,57:59:2124:57:2044:-66.3322,0,-156.509	0/1:50:34,16:34:1224:16:572:-14.5174,0,-95.4155	0/1:39:16,23:16:576:23:820:-29.6096,0,-40.4348	0/1:115:70,45:70:2508:45:1603:-45.711,0,-191.354	0/1:25:16,9:16:576:9:324:-5.4694,0,-44.6492	0/1:102:43,59:43:1536:59:2112:-54.8633,0,-107.828	0/1:59:27,32:27:972:32:1148:-28.3518,0,-70.0371	0/1:42:15,27:15:540:27:964:-31.7684,0,-36.2933	0/1:77:49,28:49:1760:28:1008:-23.6312,0,-135.505	0/1:51:31,20:31:1112:20:720:-20.477,0,-85.0388	0/1:218:108,110:108:3864:110:3952:-129.184,0,-282.331	0/1:96:49,47:49:1764:47:1676:-54.5889,0,-130.145
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chr05	22279997	.	A	G	41400.9	PASS	AB=0.513697;ABP=10.684;AC=45;AF=0.239362;AN=188;AO=2440;CIGAR=1X;DP=10707;DPB=10707;DPRA=1.14651;EPP=5301.4;EPPR=17952.4;GTI=1;LEN=1;MEANALT=1.02041;MQM=59.925;MQMR=59.9908;NS=94;NUMALT=1;ODDS=4.14147;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87213;QR=296143;RO=8266;RPL=2440;RPP=5301.4;RPPR=17952.4;RPR=0;RUN=1;SAF=0;SAP=5301.4;SAR=2440;SRF=0;SRP=17952.4;SRR=8266;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:12,22:12:409:22:778:-60.1006,0,-26.9004	0/0:192:192,0:192:6873:0:0:0,-57.7978,-618.637	0/1:158:85,73:85:3056:73:2613:-187.853,0,-227.706	0/0:182:182,0:182:6524:0:0:0,-54.7875,-587.242	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.589	0/1:209:99,110:99:3556:110:3915:-289.629,0,-257.332	0/0:206:204,2:204:7296:2:67:0,-55.6493,-650.191	0/1:120:59,61:59:2108:61:2180:-160.153,0,-153.866	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.088	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/1:74:38,36:38:1368:36:1288:-93.9422,0,-101.145	0/1:74:39,35:39:1404:35:1256:-91.0682,0,-104.383	0/1:93:47,46:47:1679:46:1644:-120.253,0,-123.401	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:275:151,124:151:5377:124:4424:-315.548,0,-401.28	0/0:159:159,0:159:5703:0:0:0,-47.8638,-513.386	0/1:142:47,95:47:1669:95:3392:-262.75,0,-107.749	0/1:138:68,70:68:2421:70:2498:-183.529,0,-176.602	0/0:122:122,0:122:4377:0:0:0,-36.7257,-394.101	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:340:336,4:336:12056:4:144:0,-89.0366,-1071.57	0/1:167:72,95:72:2584:95:3391:-255.132,0,-182.537	0/1:45:18,27:18:644:27:972:-74.2516,0,-44.7442	0/1:273:121,151:121:4336:151:5401:-404.073,0,-308.324	0/1:165:89,76:89:3196:76:2732:-196.451,0,-238.193	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.273	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:231:231,0:231:8267:0:0:0,-69.5379,-744.023	0/0:194:194,0:194:6956:0:0:0,-58.3998,-626.104	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:192:114,78:114:4092:78:2788:-193.363,0,-310.667	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:162:81,81:81:2900:81:2871:-209.859,0,-212.469	0/1:97:47,50:47:1684:50:1792:-132.363,0,-122.647	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.553	0/0:134:134,0:134:4824:0:0:0,-40.338,-434.312	0/0:155:155,0:155:5544:0:0:0,-46.6596,-499.085	0/1:176:95,81:95:3404:81:2905:-208.703,0,-253.593	0/0:116:116,0:116:4137:0:0:0,-34.9195,-372.513	0/0:144:144,0:144:5160:0:0:0,-43.3483,-464.54	0/0:213:212,1:212:7564:1:36:0,-60.5211,-677.202	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:159:159,0:159:5692:0:0:0,-47.8638,-512.398	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/1:21:9,12:9:320:12:428:-32.5372,0,-22.8207	0/1:124:65,59:65:2336:59:2120:-153.741,0,-173.172	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.291	0/1:96:48,48:48:1724:48:1715:-125.725,0,-126.533	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:180:95,85:95:3396:85:3052:-220.723,0,-251.67	0/1:211:116,95:116:4148:95:3402:-242.876,0,-309.987	0/1:81:35,46:35:1256:46:1648:-124.225,0,-88.9619	0/1:97:50,47:50:1784:47:1683:-122.557,0,-131.643	0/0:209:205,4:205:7352:4:144:0,-49.6016,-648.413	0/1:198:58,140:58:2069:140:4985:-389.194,0,-126.875	0/1:51:19,32:19:684:32:1148:-88.2773,0,-46.5378	0/1:108:51,57:51:1832:57:2040:-149.994,0,-132.65	0/1:105:46,59:46:1648:59:2094:-157.091,0,-117	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/0:161:161,0:161:5761:0:0:0,-48.4658,-518.604	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/0:192:192,0:192:6876:0:0:0,-57.7978,-618.908	0/0:228:228,0:228:8184:0:0:0,-68.6348,-736.57	0/1:111:60,51:60:2152:51:1826:-131.206,0,-160.533	0/0:136:136,0:136:4869:0:0:0,-40.9401,-438.361	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.052	0/1:135:72,63:72:2580:63:2250:-162.124,0,-191.81	0/0:259:258,1:258:9260:1:36:0,-74.3685,-829.766	0/0:127:127,0:127:4529:0:0:0,-38.2308,-407.777	0/1:80:31,49:31:1108:49:1747:-133.394,0,-75.9486	0/0:111:111,0:111:3992:0:0:0,-33.4143,-359.468	0/1:181:105,76:105:3764:76:2719:-190.466,0,-284.473	0/1:39:14,25:14:500:25:900:-69.5808,0,-33.596	0/0:89:89,0:89:3174:0:0:0,-26.7917,-285.884	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/1:155:78,77:78:2808:77:2733:-199.553,0,-206.299	0/1:68:20,48:20:720:48:1728:-135.335,0,-44.6587	0/0:131:131,0:131:4688:0:0:0,-39.4349,-422.081	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226
chr05	22345284	.	G	A	27912.4	PASS	AB=0.5481;ABP=61.7099;AC=46;AF=0.244681;AN=188;AO=1612;CIGAR=1X;DP=6155;DPB=6155;DPRA=1.02318;EPP=3494.74;EPPR=9630.44;GTI=1;LEN=1;MEANALT=1.0566;MQM=59.9764;MQMR=59.9888;NS=94;NUMALT=1;ODDS=3.38547;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57801;QR=161935;RO=4537;RPL=1;RPP=3494.74;RPPR=9630.44;RPR=1611;RUN=1;SAF=1612;SAP=3503.42;SAR=0;SRF=4537;SRP=9854.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:11,14:11:388:14:489:-36.8131,0,-27.7316	0/0:51:50,1:50:1788:1:36:0,-11.7543,-157.604	0/1:82:34,48:34:1224:48:1724:-130.761,0,-85.7826	0/0:55:54,1:54:1928:1:36:0,-12.9584,-170.198	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:59:28,31:28:1008:31:1108:-82.2702,0,-73.2756	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.835	0/1:73:31,42:31:1112:42:1497:-113.047,0,-78.4162	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:86:85,1:85:3027:1:36:0,-22.2903,-269.063	0/1:70:34,36:34:1203:36:1290:-95.3309,0,-87.5029	0/1:89:37,52:37:1312:52:1868:-141.608,0,-91.59	0/1:166:84,82:84:2966:82:2936:-214.503,0,-217.201	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.913	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/1:47:18,29:18:635:29:1044:-80.1264,0,-43.3286	0/0:80:80,0:80:2847:0:0:0,-24.0824,-256.468	0/1:54:9,45:9:316:45:1608:-128.754,0,-12.5232	0/1:37:10,27:10:351:27:972:-76.6598,0,-20.7886	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:35:34,0:34:1215:0:0:0,-10.235,-109.296	0/0:229:225,3:225:8034:3:108:0,-58.9195,-713.006	0/1:109:33,76:33:1180:76:2736:-213.67,0,-73.6958	0/1:24:12,12:12:428:12:432:-31.9965,0,-31.6341	0/1:88:37,51:37:1324:51:1832:-138.67,0,-92.9715	0/1:83:24,59:24:864:59:2120:-166.083,0,-53.0971	0/0:51:50,0:50:1796:0:0:0,-15.0515,-161.563	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:202:202,0:202:7214:0:0:0,-60.8081,-649.313	0/0:149:149,0:149:5332:0:0:0,-44.8535,-480.006	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:65:35,30:35:1252:30:1080:-77.9463,0,-93.4181	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:127:54,73:54:1936:73:2624:-198.176,0,-136.286	0/1:46:29,17:29:1040:17:608:-41.2046,0,-80.067	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.372	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:136:79,57:79:2819:57:2048:-143.651,0,-213.009	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:55:53,1:53:1892:1:36:0,-13.0172,-166.96	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:54:54,0:54:1912:0:0:0,-16.2556,-172.355	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:22:9,13:9:320:13:468:-35.837,0,-22.3277	0/1:27:19,8:19:676:8:288:-18.1396,0,-53.0402	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:22:11,11:11:392:11:392:-28.9974,0,-28.9974	0/0:66:66,0:66:2347:0:0:0,-19.868,-211.483	0/1:135:83,52:83:2964:52:1860:-127.041,0,-226.355	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:93:39,54:39:1388:54:1940:-146.88,0,-97.2231	0/1:160:62,98:62:2208:98:3513:-268.023,0,-150.821	0/1:36:13,23:13:464:23:828:-64.007,0,-31.2604	0/1:36:11,25:11:387:25:888:-69.4019,0,-24.3289	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/1:68:13,55:13:468:55:1972:-157.285,0,-21.9896	0/1:32:17,15:17:608:15:524:-37.8553,0,-45.4191	0/1:46:23,23:23:820:23:828:-60.9934,0,-60.2751	0/1:120:68,52:68:2431:52:1872:-132.635,0,-182.921	0/1:15:9,6:9:315:6:216:-15.2751,0,-24.1718	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:69:69,0:69:2420:0:0:0,-20.7711,-218.055	0/0:134:134,0:134:4744:0:0:0,-40.338,-427.122	0/0:37:36,1:36:1296:1:36:0,-7.53983,-113.346	0/1:101:38,63:38:1364:63:2264:-173.618,0,-92.6567	0/0:39:38,1:38:1360:1:36:0,-8.14189,-119.102	0/1:22:8,14:8:284:14:500:-38.7135,0,-19.2807	0/0:31:30,1:30:1072:1:36:0,-5.73365,-93.1942	0/1:68:21,47:21:752:47:1676:-130.654,0,-47.5362	0/0:92:92,0:92:3272:0:0:0,-27.6948,-294.702	0/0:132:132,0:132:4695:0:0:0,-39.736,-422.713	0/1:68:43,25:43:1548:25:892:-60.1296,0,-119.143	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:124:79,45:79:2819:45:1616:-108.402,0,-216.621	0/1:44:18,26:18:648:26:932:-70.9535,0,-45.4066	0/0:90:89,0:89:3150:0:0:0,-26.7917,-283.367	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.35	0/1:213:107,105:107:3815:105:3776:-275.859,0,-279.37	0/1:50:11,39:11:396:39:1400:-111.248,0,-20.9312	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:96:96,0:96:3424:0:0:0,-28.8989,-308.372
chr05	22345469	.	GGCA	GGCG,AGCG	105368	PASS	AB=0.431403,0.563545;ABP=108.174,93.2526;AC=143,45;AF=0.760638,0.239362;AN=188;AO=3498,1469;CIGAR=3M1X,1X2M1X;DP=4995;DPB=4995;DPRA=5.36022,1.28797;EPP=7590.14,3184.22;EPPR=11.6962;GTI=3;LEN=1,4;MEANALT=1.75269,2.25;MQM=59.9771,59.7883;MQMR=60;NS=94;NUMALT=2;ODDS=0.0769979;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=124472,51968;QR=144;RO=4;RPL=3497,1468;RPP=7590.14,3184.22;RPPR=11.6962;RPR=1,1;RUN=1,1;SAF=0,0;SAP=7598.82,3192.9;SAR=3498,1469;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:55:0,26,29:0:0:26,29:936,1021:-159.848,-83.4716,-75.6448,-76.7327,0,-68.0028	1/1:36:0,36,0:0:0:36,0:1283,0:-115.773,-10.8371,0,-115.773,-10.8371,-115.773	1/2:86:0,31,55:0:0:31,55:1108,1911:-246.054,-155.709,-146.377,-90.6991,0,-74.1424	1/1:117:0,116,0:0:0:116,0:4125,0:-371.073,-34.9195,0,-371.073,-34.9195,-371.073	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:32:0,32,0:0:0:32,0:1152,0:-103.99,-9.63296,0,-103.99,-9.63296,-103.99	1/2:78:0,31,47:0:0:31,47:1108,1640:-224.075,-133.73,-124.398,-90.6991,0,-76.5507	1/1:39:0,39,0:0:0:39,0:1391,0:-125.488,-11.7402,0,-125.488,-11.7402,-125.488	1/2:85:0,37,47:0:0:37,47:1302,1680:-242.997,-137.009,-125.871,-106.04,0,-91.892	1/1:39:0,39,0:0:0:39,0:1379,0:-124.408,-11.7402,0,-124.408,-11.7402,-124.408	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/2:56:0,28,28:0:0:28,28:996,952:-158.733,-77.5549,-69.1261,-81.526,0,-73.0972	1/2:48:0,29,19:0:0:29,19:1035,677:-139.917,-55.5391,-46.8092,-84.7338,0,-79.0143	1/2:15:0,5,10:0:0:5,10:180,360:-44.4211,-29.734,-28.2289,-15.0469,0,-12.0366	1/1:46:0,45,0:0:0:45,0:1595,0:-143.479,-13.5464,0,-143.479,-13.5464,-143.479	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7925,-9.0309,0,-96.7925,-9.0309,-96.7925	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:20:0,20,0:0:0:20,0:707,0:-63.9546,-6.0206,0,-63.9546,-6.0206,-63.9546	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:147:0,74,73:0:0:74,73:2656,2597:-428.608,-211.956,-189.68,-217.01,0,-195.034	1/1:81:0,80,0:0:0:80,0:2858,0:-257.097,-24.0824,0,-257.097,-24.0824,-257.097	1/2:112:0,29,81:0:0:29,81:1024,2887:-318.748,-235.358,-226.629,-83.416,0,-59.0326	1/2:78:0,17,60:0:0:17,60:608,2125:-222.668,-173.09,-167.973,-49.5748,0,-31.513	1/1:67:0,67,0:0:0:67,0:2400,0:-216.255,-20.169,0,-216.255,-20.169,-216.255	1/1:42:0,42,0:0:0:42,0:1473,0:-132.863,-12.6433,0,-132.863,-12.6433,-132.863	1/1:102:0,102,0:0:0:102,0:3627,0:-326.506,-30.7051,0,-326.506,-30.7051,-326.506	1/2:171:0,80,91:0:0:80,91:2835,3204:-492.118,-261.166,-237.084,-231.305,0,-203.911	1/2:7:0,5,2:0:0:5,2:176,71:-20.4659,-6.14,-4.63485,-14.6799,0,-14.0778	1/2:112:1,55,55:1:36:55,55:1961,1956:-316.015,-156.465,-142.846,-156.914,0,-143.295	1/2:63:0,15,48:0:0:15,48:523,1682:-179.745,-137.211,-132.696,-42.883,0,-28.4336	1/1:48:0,48,0:0:0:48,0:1720,0:-155.086,-14.4494,0,-155.086,-14.4494,-155.086	1/2:25:0,7,18:0:0:7,18:252,630:-72.1714,-51.6067,-49.4995,-20.9217,0,-15.5032	1/1:12:0,12,0:0:0:12,0:423,0:-38.4051,-3.61236,0,-38.4051,-3.61236,-38.4051	1/2:10:0,9,1:0:0:9,1:320,36:-29.3709,-3.29724,-0.587975,-26.4331,0,-26.1321	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:94:2,91,0:2:72:91,0:3247,0:-285.634,-21.479,0,-286.236,-27.3937,-292.111	1/1:90:0,89,0:0:0:89,0:3159,0:-284.174,-26.7917,0,-284.174,-26.7917,-284.174	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:107:0,50,56:0:0:50,56:1786,1992:-308.025,-162.41,-147.359,-145.709,0,-128.851	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:91:0,37,54:0:0:37,54:1312,1924:-264.065,-157.179,-146.041,-107.242,0,-90.986	1/2:28:0,18,10:0:0:18,10:636,349:-80.5341,-28.735,-23.3165,-52.1495,0,-49.1392	1/1:27:1,25,0:1:36:25,0:879,0:-75.8633,-4.54841,0,-76.1644,-7.52575,-79.1022	1/1:76:0,76,0:0:0:76,0:2676,0:-241.085,-22.8783,0,-241.085,-22.8783,-241.085	1/1:52:0,52,0:0:0:52,0:1836,0:-165.518,-15.6536,0,-165.518,-15.6536,-165.518	1/2:108:0,43,64:0:0:43,64:1515,2254:-306.948,-183.602,-170.657,-123.446,0,-104.18	1/1:71:0,70,1:0:0:70,1:2478,36:-222.914,-21.0721,0,-219.976,-17.7749,-219.675	1/1:24:0,24,0:0:0:24,0:832,0:-75.194,-7.22472,0,-75.194,-7.22472,-75.194	1/1:76:0,76,0:0:0:76,0:2717,0:-244.774,-22.8783,0,-244.774,-22.8783,-244.774	1/2:9:0,1,8:0:0:1,8:36,285:-26.5218,-23.584,-23.2829,-3.29724,0,-0.889005	1/1:89:0,88,0:0:0:88,0:3147,0:-283.095,-26.4906,0,-283.095,-26.4906,-283.095	1/1:51:0,51,0:0:0:51,0:1824,0:-164.441,-15.3525,0,-164.441,-15.3525,-164.441	1/2:4:0,3,1:0:0:3,1:108,35:-12.0173,-3.1976,-2.29451,-9.17208,0,-8.87105	1/2:100:0,40,59:0:0:40,59:1428,2073:-285.248,-168.826,-156.784,-116.524,0,-98.763	1/1:31:0,30,0:0:0:30,0:1072,0:-96.51,-9.0309,0,-96.51,-9.0309,-96.51	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.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chr05	22576799	.	A	C	47368	PASS	AB=0.518574;ABP=5.0269;AC=163;AF=0.895604;AN=182;AO=3190;CIGAR=1X;DP=3528;DPB=3528;DPRA=0;EPP=6748.8;EPPR=711.142;GTI=1;LEN=1;MEANALT=1;MQM=28.7633;MQMR=28.1302;NS=91;NUMALT=1;ODDS=4.97128;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113771;QR=12095;RO=338;RPL=12;RPP=6826.17;RPPR=736.968;RPR=3178;RUN=1;SAF=3181;SAP=6852.05;SAR=9;SRF=335;SRP=711.142;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:839:-61.9696,-7.22472,0	1/1:19:0,19:0:0:19:680:-48.3363,-5.71957,0	1/1:75:0,75:0:0:75:2692:-191.377,-22.5773,0	1/1:48:0,48:0:0:48:1711:-107.257,-14.4494,0	1/1:8:0,8:0:0:8:280:-19.7883,-2.40824,0	1/1:9:0,9:0:0:9:324:-22.7864,-2.70927,0	1/1:41:0,41:0:0:41:1460:-95.7043,-12.3422,0	1/1:46:0,46:0:0:46:1652:-117.374,-13.8474,0	1/1:40:0,40:0:0:40:1414:-102.386,-12.0412,0	1/1:34:0,34:0:0:34:1216:-77.003,-10.235,0	1/1:37:0,37:0:0:37:1332:-83.5747,-11.1381,0	1/1:67:0,67:0:0:67:2386:-170.338,-20.169,0	1/1:53:0,53:0:0:53:1882:-133.916,-15.9546,0	1/1:48:0,48:0:0:48:1700:-120.072,-14.4494,0	1/1:41:0,41:0:0:41:1468:-93.7871,-12.3422,0	1/1:37:0,37:0:0:37:1319:-90.9312,-11.1381,0	1/1:21:0,21:0:0:21:752:-54.2896,-6.32163,0	1/1:19:0,19:0:0:19:676:-49.0499,-5.71957,0	1/1:28:0,28:0:0:28:1000:-71.3208,-8.42884,0	1/1:47:0,47:0:0:47:1675:-105.827,-14.1484,0	1/1:86:0,86:0:0:86:3040:-215.405,-25.8886,0	1/1:31:0,31:0:0:31:1099:-78.8842,-9.33193,0	1/1:36:0,36:0:0:36:1258:-79.1161,-10.8371,0	0/1:23:7,16:7:252:16:576:-33.6094,0,-10.588	1/1:25:0,25:0:0:25:887:-60.7701,-7.52575,0	0/1:60:29,31:29:1029:31:1116:-60.9285,0,-54.7886	1/1:87:0,87:0:0:87:3108:-216.361,-26.1896,0	0/1:20:11,9:11:396:9:324:-16.6458,0,-21.4928	1/1:80:0,80:0:0:80:2838:-203.708,-24.0824,0	1/1:31:3,28:3:108:28:1008:-62.9533,-1.1946,0	0/1:32:15,17:15:536:17:612:-29.3823,0,-23.8755	0/1:6:1,5:1:36:5:180:-10.7803,0,-0.930022	1/1:15:0,15:0:0:15:536:-37.1314,-4.51545,0	1/1:3:0,3:0:0:3:108:-7.89903,-0.90309,0	1/1:8:0,8:0:0:8:288:-22.0123,-2.40824,0	0/1:8:6,2:6:212:2:72:-2.95181,0,-13.0185	1/1:102:0,102:0:0:102:3644:-259.919,-30.7051,0	1/1:39:0,39:0:0:39:1400:-97.7133,-11.7402,0	1/1:49:0,49:0:0:49:1756:-125.93,-14.7505,0	.:.:.:.:.:.:.:.	0/1:33:12,21:12:428:21:748:-42.8256,0,-19.8165	0/1:31:13,18:13:468:18:648:-36.508,0,-23.1093	1/1:34:0,34:0:0:34:1220:-83.9154,-10.235,0	1/1:33:0,33:0:0:33:1178:-77.6361,-9.93399,0	1/1:16:0,16:0:0:16:576:-36.2358,-4.81648,0	1/1:41:0,41:0:0:41:1459:-104.143,-12.3422,0	1/1:31:0,31:0:0:31:1116:-79.6923,-9.33193,0	0/1:37:15,22:15:525:22:765:-38.0148,0,-21.9901	1/1:51:0,51:0:0:51:1827:-114.296,-15.3525,0	1/1:46:0,46:0:0:46:1639:-105.957,-13.8474,0	1/1:50:0,50:0:0:50:1792:-126.067,-15.0515,0	.:.:.:.:.:.:.:.	0/1:30:16,14:16:561:14:504:-26.8709,0,-30.9306	1/1:42:0,42:0:0:42:1500:-107.275,-12.6433,0	.:.:.:.:.:.:.:.	0/1:27:14,13:14:504:13:464:-24.6568,0,-27.1855	1/1:22:0,22:0:0:22:788:-51.0968,-6.62266,0	1/1:4:0,4:0:0:4:144:-11.1569,-1.20412,0	1/1:14:0,14:0:0:14:500:-35.465,-4.21442,0	1/1:38:0,38:0:0:38:1351:-95.1133,-11.4391,0	1/1:108:2,106:2:72:106:3796:-233.38,-27.8241,0	1/1:3:0,3:0:0:3:108:-7.95982,-0.90309,0	1/1:49:0,49:0:0:49:1752:-125.764,-14.7505,0	1/1:50:0,50:0:0:50:1771:-111.8,-15.0515,0	0/1:35:12,23:12:432:23:820:-48.9003,0,-19.2886	1/1:13:0,13:0:0:13:459:-29.1839,-3.91339,0	1/1:68:3,65:3:108:65:2299:-141.804,-13.5627,0	1/1:62:1,61:1:36:61:2177:-139.436,-16.197,0	1/1:27:0,27:0:0:27:952:-67.1939,-8.12781,0	1/1:25:0,25:0:0:25:896:-64.4449,-7.52575,0	1/1:36:0,36:0:0:36:1283:-91.6896,-10.8371,0	1/1:20:2,18:2:68:18:644:-33.9847,-1.37688,0	1/1:87:0,87:0:0:87:3097:-223.532,-26.1896,0	0/1:29:10,19:10:360:19:672:-40.0758,0,-17.2755	1/1:75:0,75:0:0:75:2696:-187.532,-22.5773,0	1/1:49:0,49:0:0:49:1756:-112.646,-14.7505,0	0/1:34:18,16:18:648:16:576:-29.5468,0,-35.2004	1/1:20:0,20:0:0:20:712:-50.3856,-6.0206,0	1/1:7:0,7:0:0:7:248:-17.9659,-2.10721,0	1/1:19:0,19:0:0:19:671:-48.0699,-5.71957,0	0/1:19:12,7:12:432:7:244:-12.1574,0,-25.0302	1/1:81:0,81:0:0:81:2907:-181.413,-24.3834,0	1/1:50:0,50:0:0:50:1788:-113.938,-15.0515,0	1/1:33:0,33:0:0:33:1171:-74.2156,-9.93399,0	1/1:21:0,21:0:0:21:737:-48.8656,-6.32163,0	1/1:62:1,61:1:36:61:2184:-134.487,-15.0724,0	1/1:13:0,13:0:0:13:468:-33.2888,-3.91339,0	0/1:43:27,16:27:972:16:563:-27.6069,0,-55.8901	0/1:40:21,19:21:748:19:676:-36.7357,0,-41.4941	1/1:29:0,29:0:0:29:1020:-71.877,-8.72987,0	0/1:119:55,64:55:1980:64:2282:-124.261,0,-101.438	0/1:47:30,17:30:1076:17:600:-23.6332,0,-52.5791	1/1:51:1,50:1:36:50:1792:-115.317,-12.3718,0	1/1:41:1,40:1:36:40:1427:-87.7188,-9.36148,0
chr05	22683219	.	G	A	69274.3	PASS	AB=0.522845;ABP=11.7413;AC=137;AF=0.736559;AN=186;AO=3306;CIGAR=1X;DP=4240;DPB=4240;DPRA=10.3321;EPP=7181.9;EPPR=2031.17;GTI=4;LEN=1;MEANALT=1;MQM=59.993;MQMR=60;NS=93;NUMALT=1;ODDS=0.939628;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117396;QR=33141;RO=934;RPL=3306;RPP=7181.9;RPPR=2031.17;RPR=0;RUN=1;SAF=3306;SAP=7181.9;SAR=0;SRF=934;SRP=2031.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:7,15:7:226:15:532:-41.5904,0,-14.0338	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	0/1:29:12,17:12:424:17:604:-45.9607,0,-29.7665	1/1:62:0,62:0:0:62:2201:-198.354,-18.6639,0	1/1:30:0,30:0:0:30:1063:-95.9808,-9.0309,0	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:88:39,49:39:1395:49:1756:-131.833,0,-99.3577	1/1:71:0,71:0:0:71:2510:-226.152,-21.3731,0	0/1:48:20,28:20:712:28:992:-75.1436,0,-49.9572	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	1/1:28:1,27:1:36:27:964:-83.4785,-4.83057,0	0/1:50:25,25:25:888:25:896:-65.9089,0,-65.1875	0/1:36:14,22:14:504:22:784:-60.0468,0,-34.861	0/1:47:27,20:27:960:20:716:-50.6193,0,-72.5679	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:35:1,34:1:36:34:1199:-104.616,-6.93778,0	1/1:49:0,49:0:0:49:1746:-157.424,-14.7505,0	1/1:44:0,44:0:0:44:1556:-140.329,-13.2453,0	1/1:34:0,34:0:0:34:1183:-106.772,-10.235,0	0/1:59:30,29:30:1068:29:1018:-74.1697,0,-78.6713	0/1:100:46,54:46:1635:54:1879:-139.284,0,-117.335	0/1:45:30,15:30:1072:15:536:-35.0285,0,-83.2461	0/1:23:13,10:13:464:10:360:-25.8206,0,-35.1738	1/1:63:1,62:1:32:62:2215:-196.416,-15.7656,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:135:0,135:0:0:135:4803:-432.427,-40.6391,0	0/1:113:39,74:39:1400:74:2613:-201.401,0,-92.2828	0/1:27:14,13:14:480:13:468:-34.3318,0,-35.396	0/1:63:20,43:20:716:43:1540:-119.928,0,-45.8028	0/1:65:35,30:35:1227:30:1042:-74.5216,0,-91.1661	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:135:0,135:0:0:135:4768:-429.281,-40.6391,0	1/1:56:1,55:1:36:55:1956:-172.717,-13.2594,0	1/1:53:0,53:0:0:53:1847:-166.508,-15.9546,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:35:20,15:20:716:15:532:-37.677,0,-54.2317	1/1:22:0,22:0:0:22:783:-70.7929,-6.62266,0	0/1:53:25,28:25:879:28:993:-73.7281,0,-63.4722	0/1:38:20,18:20:716:18:648:-47.2127,0,-53.3286	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	1/1:56:0,56:0:0:56:1993:-179.643,-16.8577,0	0/1:39:21,18:21:739:18:644:-46.5504,0,-55.0922	0/1:66:33,33:33:1157:33:1176:-86.2798,0,-84.5665	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:40:0,40:0:0:40:1409:-127.106,-12.0412,0	1/1:111:0,111:0:0:111:3930:-353.893,-33.4143,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:39:19,20:19:684:20:708:-52.3054,0,-50.1502	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:29:14,15:14:504:15:526:-38.9404,0,-36.9682	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:48:0,48:0:0:48:1712:-154.364,-14.4494,0	0/1:78:41,37:41:1450:37:1332:-96.702,0,-107.314	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:87:37,50:37:1304:50:1778:-134.112,0,-91.469	0/1:89:36,53:36:1283:53:1886:-143.226,0,-88.981	0/1:21:16,5:16:561:5:180:-10.2304,0,-44.4955	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	1/1:83:1,82:1:36:82:2911:-258.629,-21.3872,0	0/1:31:26,5:26:923:5:176:-6.85309,0,-74.0548	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:53:30,23:30:1072:23:823:-58.4384,0,-80.8379	0/1:37:16,21:16:568:21:756:-57.2291,0,-40.3138	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:70:0,70:0:0:70:2418:-217.874,-21.0721,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:82:0,82:0:0:82:2912:-262.313,-24.6845,0	1/1:91:0,91:0:0:91:3240:-291.821,-27.3937,0	0/1:63:26,37:26:936:37:1294:-97.7938,0,-65.5946	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:41:0,41:0:0:41:1452:-130.976,-12.3422,0	0/1:60:22,38:22:776:38:1346:-103.377,0,-52.1004	1/1:105:0,105:0:0:105:3748:-337.521,-31.6082,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:83:45,38:45:1572:38:1341:-96.0034,0,-116.782	0/1:36:17,19:17:608:19:680:-50.6921,0,-44.2149	1/1:50:0,50:0:0:50:1751:-157.872,-15.0515,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:27:1,26:1:32:26:923:-80.1874,-4.9285,0	0/1:57:24,33:24:855:33:1156:-87.1877,0,-60.1115	0/1:29:20,9:20:711:9:315:-19.9574,0,-55.5858	1/1:37:0,37:0:0:37:1311:-118.291,-11.1381,0	1/1:51:0,51:0:0:51:1812:-163.36,-15.3525,0
chr05	22686741	.	A	C	33749.2	PASS	AB=0.476515;ABP=23.4093;AC=47;AF=0.25;AN=188;AO=2038;CIGAR=1X;DP=9668;DPB=9668;DPRA=0.874869;EPP=4411.12;EPPR=16504.1;GTI=2;LEN=1;MEANALT=1.03846;MQM=59.9769;MQMR=59.9734;NS=94;NUMALT=1;ODDS=4.05967;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72876;QR=273212;RO=7627;RPL=0;RPP=4428.47;RPPR=16504.1;RPR=2038;RUN=1;SAF=2036;SAP=4411.12;SAR=2;SRF=7627;SRP=16564.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:15,9:15:540:9:320:-21.913,0,-41.7118	0/0:109:109,0:109:3867:0:0:0,-32.8123,-348.223	0/1:125:67,58:67:2408:58:2084:-150.201,0,-179.347	0/0:294:293,1:293:10452:1:36:0,-84.9045,-936.998	0/0:28:27,1:27:953:1:36:0,-4.83056,-82.485	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/1:83:53,30:53:1885:30:1063:-70.9945,0,-144.941	0/0:140:138,2:138:4907:2:72:0,-35.3075,-434.943	0/1:94:49,45:49:1760:45:1612:-117.073,0,-130.387	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:84:39,45:39:1385:45:1616:-120.443,0,-99.6603	0/1:79:42,37:42:1512:37:1323:-95.5818,0,-112.593	0/1:107:71,36:71:2556:36:1279:-83.2022,0,-198.079	0/0:78:78,0:78:2774:0:0:0,-23.4803,-249.898	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/0:58:57,0:57:2052:0:0:0,-17.1587,-184.592	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/1:118:57,61:57:2052:61:2169:-159.953,0,-149.43	0/1:112:66,46:66:2353:46:1631:-113.363,0,-178.312	0/1:60:19,41:19:684:41:1457:-113.362,0,-43.8285	0/1:51:35,16:35:1245:16:576:-36.8225,0,-97.0002	0/1:120:108,12:108:3884:12:424:-2.37282,0,-313.629	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:319:319,0:319:11438:0:0:0,-96.0286,-1029.29	0/1:212:119,93:119:4264:93:3332:-236.274,0,-320.115	0/1:24:9,15:9:324:15:536:-41.3501,0,-22.2811	0/1:240:121,119:121:4348:119:4264:-311.69,0,-319.246	0/1:128:70,57:70:2516:57:2052:-146.361,0,-188.101	0/0:239:239,0:239:8554:0:0:0,-71.9462,-769.854	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:234:234,0:234:8416:0:0:0,-70.441,-757.438	0/0:227:227,0:227:8152:0:0:0,-68.3338,-733.691	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:142:49,93:49:1745:93:3320:-256.273,0,-114.586	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:125:30,95:30:1080:95:3392:-267.867,0,-59.8845	0/1:86:40,46:40:1440:46:1652:-123.08,0,-104.009	0/0:77:77,0:77:2733:0:0:0,-23.1793,-246.126	0/0:125:124,1:124:4448:1:36:0,-34.0305,-396.891	0/1:95:58,37:58:2061:37:1312:-89.7829,0,-157.162	0/1:156:88,68:88:3134:68:2433:-172.263,0,-235.323	0/0:150:150,0:150:5346:0:0:0,-45.1545,-481.271	0/0:191:191,0:191:6827:0:0:0,-57.4967,-614.496	0/0:188:188,0:188:6732:0:0:0,-56.5936,-605.867	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:110:58,52:58:2088:52:1872:-135.646,0,-155.076	0/0:31:31,0:31:1086:0:0:0,-9.33193,-97.1863	0/0:12:11,1:11:392:1:36:0,-0.0140849,-32.0218	0/1:108:48,60:48:1724:60:2139:-160.267,0,-122.934	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:19:12,7:12:428:7:248:-16.9446,0,-33.1392	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.747	0/1:152:85,67:85:3041:67:2404:-170.86,0,-228.162	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:268:171,97:171:6136:97:3468:-231.656,0,-471.662	0/1:269:110,159:110:3948:159:5683:-430.611,0,-274.534	0/1:67:40,27:40:1436:27:968:-67.2684,0,-109.369	0/1:87:41,46:41:1468:46:1652:-122.779,0,-106.226	0/0:181:181,0:181:6496:0:0:0,-54.4864,-584.722	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	0/1:32:14,18:14:504:18:648:-49.0189,0,-36.0651	0/1:50:28,22:28:1008:22:788:-56.1933,0,-75.9849	0/1:108:57,51:57:2044:51:1820:-131.57,0,-151.721	0/1:31:11,20:11:396:20:712:-55.0724,0,-26.6508	0/0:126:126,0:126:4490:0:0:0,-37.9298,-404.267	0/0:127:127,0:127:4568:0:0:0,-38.2308,-411.283	0/0:350:350,0:350:12528:0:0:0,-105.36,-1127.3	0/0:184:184,0:184:6544:0:0:0,-55.3895,-589.04	0/1:54:33,21:33:1184:21:744:-51.0241,0,-90.6127	0/0:169:167,2:167:6000:2:68:0,-44.4164,-533.645	0/1:19:12,6:12:432:6:216:-14.0121,0,-33.4428	0/0:131:131,0:131:4692:0:0:0,-39.4349,-422.44	0/1:113:64,49:64:2304:49:1760:-124.667,0,-172.667	0/0:239:239,0:239:8568:0:0:0,-71.9462,-771.071	0/0:134:134,0:134:4805:0:0:0,-40.338,-432.603	0/1:80:44,36:44:1584:36:1292:-92.499,0,-118.639	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/1:147:76,71:76:2732:71:2527:-183.43,0,-201.871	0/1:49:25,24:25:900:24:864:-63.3321,0,-66.5705	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:100:48,52:48:1724:52:1856:-137.217,0,-125.342	0/1:75:22,53:22:788:53:1904:-149.058,0,-48.6675	0/0:189:189,0:189:6784:0:0:0,-56.8947,-610.63	0/0:97:97,0:97:3473:0:0:0,-29.1999,-312.78
chr05	22761106	.	A	T	26434.8	PASS	AB=0.467578;ABP=34.4105;AC=42;AF=0.225806;AN=186;AO=1617;CIGAR=1X;DP=7837;DPB=7837;DPRA=0.989498;EPP=3514.28;EPPR=13496.5;GTI=1;LEN=1;MEANALT=1.04651;MQM=59.4292;MQMR=59.6286;NS=93;NUMALT=1;ODDS=1.07092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57987;QR=222775;RO=6214;RPL=0;RPP=3514.28;RPPR=13496.5;RPR=1617;RUN=1;SAF=1617;SAP=3514.28;SAR=0;SRF=6214;SRP=13496.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:20,20:20:716:20:716:-52.1894,0,-52.6815	0/0:147:147,0:147:5254:0:0:0,-44.2514,-472.73	0/1:75:41,34:41:1446:34:1220:-87.5286,0,-107.759	0/0:179:179,0:179:6390:0:0:0,-53.8844,-575.086	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.073	0/0:29:28,0:28:1008:0:0:0,-8.42884,-90.6355	0/1:81:46,35:46:1656:35:1256:-88.9481,0,-124.838	0/0:130:130,0:130:4650:0:0:0,-39.1339,-418.555	0/1:79:37,42:37:1309:42:1497:-111.231,0,-94.2099	0/0:191:191,0:191:6864:0:0:0,-57.4967,-617.549	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.976	0/1:86:50,36:50:1796:36:1288:-90.0169,0,-135.944	0/1:80:45,35:45:1616:35:1256:-89.0386,0,-121.641	0/1:59:31,28:31:1112:28:1008:-73.2756,0,-82.6031	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.393	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:56:55,0:55:1980:0:0:0,-16.5566,-178.012	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.397	0/1:156:64,92:64:2300:92:3296:-249.735,0,-160.286	0/1:184:115,69:115:4125:69:2457:-165.851,0,-315.967	0/1:62:18,44:18:644:44:1580:-123.828,0,-39.6267	0/1:93:40,53:40:1440:53:1900:-143.282,0,-101.832	0/0:164:155,9:155:5557:9:324:0,-19.8713,-470.684	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:200:200,0:200:7180:0:0:0,-60.206,-646.136	0/1:143:109,34:109:3893:34:1224:-67.4174,0,-307.331	0/1:41:24,17:24:864:17:608:-42.696,0,-65.7266	0/1:110:91,19:91:3264:19:684:-28.777,0,-260.849	0/1:84:41,43:41:1442:43:1543:-113.852,0,-104.743	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.223	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3112	0/0:232:232,0:232:8298:0:0:0,-69.839,-746.756	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.027	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.446	.:.:.:.:.:.:.:.	0/1:159:57,102:57:2048:102:3660:-281.725,0,-136.694	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6755	0/1:97:37,60:37:1324:60:2156:-164.905,0,-90.2429	0/1:126:71,55:71:2548:55:1972:-139.798,0,-190.532	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.898	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.151	0/1:92:57,35:57:2048:35:1260:-85.8732,0,-156.859	0/1:126:68,58:68:2444:58:2076:-149.075,0,-182.278	0/0:140:140,0:140:5025:0:0:0,-42.1442,-452.354	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/0:224:224,0:224:8033:0:0:0,-67.4307,-722.931	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:87:22,65:22:792:65:2332:-183.79,0,-45.4161	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:9:5,4:5:180:4:144:-10.6025,0,-13.8419	0/1:72:39,32:39:1404:32:1152:-82.2312,0,-104.928	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.792	0/0:1:0,0:0:0:0:0:0,0,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.1976	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.135	0/1:95:60,35:60:2156:35:1255:-84.6387,0,-165.6	0/1:7:1,6:1:36:6:216:-17.6693,0,-1.49106	0/1:132:104,27:104:3721:27:972:-48.0046,0,-295.254	0/1:157:80,77:80:2846:77:2760:-200.538,0,-209.079	0/1:101:66,35:66:2357:35:1248:-82.2071,0,-180.934	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:197:197,0:197:7039:0:0:0,-59.3029,-633.485	0/1:88:36,52:36:1296:52:1864:-141.535,0,-90.4396	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8006	0/1:67:45,22:45:1612:22:784:-50.6699,0,-125.029	0/1:99:56,43:56:2016:43:1540:-109.05,0,-151.897	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5517	0/0:87:87,0:87:3094:0:0:0,-26.1896,-278.573	0/0:121:121,0:121:4333:0:0:0,-36.4246,-389.275	0/0:100:100,0:100:3539:0:0:0,-30.103,-318.664	0/0:134:134,0:134:4816:0:0:0,-40.338,-433.592	0/1:61:25,36:25:885:36:1296:-98.5307,0,-61.6022	0/0:137:137,0:137:4928:0:0:0,-41.2411,-443.432	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:119:119,0:119:4276:0:0:0,-35.8226,-384.976	0/1:54:23,31:23:828:31:1112:-84.1348,0,-58.5876	0/0:187:187,0:187:6697:0:0:0,-56.2926,-602.784	0/0:95:95,0:95:3420:0:0:0,-28.5978,-308.006	0/1:64:36,28:36:1296:28:1004:-71.4082,0,-97.6643	0/0:108:107,0:107:3844:0:0:0,-32.2102,-345.75	0/1:175:91,84:91:3272:84:3024:-219.474,0,-242.001	0/1:37:15,22:15:540:22:792:-60.4676,0,-37.7984	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.752	0/0:80:80,0:80:2876:0:0:0,-24.0824,-258.935	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:46:19,27:19:684:27:961:-72.9558,0,-48.0429	0/1:78:27,51:27:972:51:1830:-141.456,0,-64.309	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.233	0/0:136:136,0:136:4892:0:0:0,-40.9401,-440.205
chr05	22761151	.	T	C	354880	PASS	AB=0.506216;ABP=5.79089;AC=144;AF=0.765957;AN=188;AO=13303;CIGAR=1X;DP=17424;DPB=17424;DPRA=0;EPP=28890.1;EPPR=8945.13;GTI=0;LEN=1;MEANALT=1.03191;MQM=51.8797;MQMR=58.5481;NS=94;NUMALT=1;ODDS=2.53881;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=472914;QR=147463;RO=4118;RPL=6146;RPP=169.853;RPPR=393.011;RPR=7157;RUN=1;SAF=6146;SAP=169.853;SAR=7157;SRF=1629;SRP=393.011;SRR=2489;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:101:55,46:55:1960:46:1648:-116.388,0,-145.616	1/1:226:0,225:0:0:225:8011:-712.56,-67.7318,0	0/1:359:187,172:187:6684:172:6107:-428.597,0,-491.762	1/1:595:0,595:0:0:595:21168:-1887.9,-179.113,0	1/1:98:0,98:0:0:98:3509:-314.051,-29.5009,0	1/1:51:0,51:0:0:51:1772:-157.476,-15.3525,0	0/1:150:73,77:73:2593:77:2748:-200.549,0,-188.433	1/1:265:1,264:1:32:264:9371:-826.689,-76.5743,0	0/1:198:117,81:117:4192:81:2840:-192.747,0,-317.596	1/1:291:0,291:0:0:291:10369:-928.336,-87.5997,0	1/1:84:0,84:0:0:84:2983:-266.717,-25.2865,0	0/1:180:78,101:78:2796:101:3563:-262.847,0,-196.854	0/1:165:74,91:74:2664:91:3207:-234.193,0,-189.948	0/1:126:63,63:63:2259:63:2237:-161.285,0,-165.444	1/1:131:0,131:0:0:131:4678:-418.88,-39.4349,0	1/1:102:0,102:0:0:102:3590:-320.454,-30.7051,0	1/1:82:0,82:0:0:82:2875:-255.887,-24.6845,0	1/1:94:0,94:0:0:94:3334:-297.38,-28.2968,0	1/1:58:0,58:0:0:58:2068:-183.272,-17.4597,0	0/1:298:168,130:168:6028:130:4597:-320.724,0,-451.665	0/1:340:146,194:146:5227:194:6873:-510.951,0,-367.955	0/1:121:87,34:87:3128:34:1207:-72.0067,0,-245.221	0/1:246:135,111:135:4840:111:3966:-279.667,0,-361.582	1/1:236:13,223:13:464:223:7944:-668.649,-28.9552,0	1/1:132:1,131:1:36:131:4623:-409.49,-36.1381,0	1/1:505:1,504:1:36:504:17847:-1591.31,-148.422,0	0/1:384:120,264:120:4273:264:9400:-721.153,0,-268.729	0/1:84:45,39:45:1616:39:1395:-99.8632,0,-120.128	0/1:289:60,229:60:2151:229:8170:-644.795,0,-106.824	0/1:196:104,92:104:3715:92:3245:-229.299,0,-275.507	1/1:146:0,146:0:0:146:5232:-468.467,-43.9504,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7396	1/1:14:0,14:0:0:14:489:-43.9311,-4.21442,0	0/1:7:1,6:1:36:6:216:-17.4,0,-1.49106	1/1:33:1,32:1:36:32:1152:-97.7764,-6.33743,0	1/1:27:0,27:0:0:27:951:-84.3207,-8.12781,0	1/1:360:0,360:0:0:360:12748:-1144.04,-108.371,0	1/1:140:0,140:0:0:140:4993:-445.185,-42.1442,0	1/1:90:0,90:0:0:90:3212:-283.324,-27.0927,0	1/1:7:0,7:0:0:7:252:-22.6992,-2.10721,0	0/1:368:211,157:211:7572:157:5580:-384.899,0,-570.17	1/1:51:0,51:0:0:51:1806:-161.411,-15.3525,0	0/1:361:195,166:195:6999:166:5932:-417.599,0,-520.747	0/1:176:77,99:77:2764:99:3517:-262.329,0,-195.992	1/1:115:0,115:0:0:115:4069:-363.887,-34.6185,0	1/1:194:4,190:4:144:190:6773:-594.252,-45.0862,0	0/1:185:86,99:86:3096:99:3489:-253.794,0,-222.892	0/1:364:206,158:206:7347:158:5632:-393.812,0,-550.383	1/1:238:0,238:0:0:238:8476:-757.698,-71.6451,0	1/1:267:0,267:0:0:267:9491:-848.046,-80.375,0	1/1:337:0,337:0:0:337:11963:-1073.92,-101.447,0	0/1:25:14,11:14:504:11:392:-27.8086,0,-38.1723	0/1:406:227,179:227:8107:179:6370:-436.754,0,-605.212	1/1:68:0,68:0:0:68:2414:-216.064,-20.47,0	0/1:12:5,7:5:165:7:248:-18.9506,0,-11.5587	0/1:294:135,159:135:4856:159:5674:-416.689,0,-347.839	1/1:92:0,92:0:0:92:3280:-292.277,-27.6948,0	0/1:10:7,3:7:252:3:108:-6.99909,0,-20.0187	0/1:27:18,9:18:648:9:324:-21.2833,0,-50.5241	1/1:212:0,212:0:0:212:7559:-672.363,-63.8184,0	0/1:162:78,84:78:2804:84:2978:-217.834,0,-203.613	0/1:11:9,2:9:324:2:72:-3.4955,0,-26.1807	0/1:305:71,234:71:2556:234:8313:-652.5,0,-138.402	0/1:362:194,168:194:6957:168:5974:-424.867,0,-516.868	0/1:180:73,107:73:2624:107:3791:-283.92,0,-182.013	1/1:75:1,74:1:36:74:2641:-232.373,-18.979,0	1/1:357:4,353:4:144:353:12614:-1114.01,-94.1541,0	0/1:298:182,116:182:6532:116:4130:-278.914,0,-497.545	0/1:64:34,30:34:1220:30:1048:-74.0626,0,-90.7855	0/1:139:64,75:64:2283:75:2667:-194.703,0,-163.708	0/1:146:68,78:68:2436:78:2783:-206.125,0,-175.469	1/1:24:0,24:0:0:24:860:-76.8808,-7.22472,0	1/1:189:0,189:0:0:189:6695:-592.931,-56.8947,0	1/1:203:0,202:0:0:202:7227:-642.716,-60.8081,0	1/1:283:0,283:0:0:283:10113:-898.14,-85.1915,0	1/1:393:0,393:0:0:393:14039:-1252.63,-118.305,0	0/1:165:98,67:98:3528:67:2364:-159.262,0,-267.737	1/1:313:0,313:0:0:313:11125:-985.328,-94.2224,0	1/1:10:0,10:0:0:10:360:-32.1956,-3.0103,0	1/1:303:0,303:0:0:303:10833:-963.239,-91.2121,0	0/1:211:104,107:104:3699:107:3807:-273.602,0,-269.462	1/1:431:0,431:0:0:431:15357:-1371.89,-129.744,0	1/1:151:1,150:1:36:150:5337:-474.755,-41.8573,0	0/1:128:65,63:65:2324:63:2227:-161.478,0,-170.854	1/1:158:1,157:1:36:157:5521:-492.048,-43.9645,0	0/1:298:147,151:147:5237:151:5373:-391.473,0,-380.275	0/1:56:32,24:32:1139:24:852:-59.5784,0,-85.8779	1/1:135:0,135:0:0:135:4802:-427.845,-40.6391,0	1/1:128:0,128:0:0:128:4545:-404.382,-38.5318,0	1/1:65:0,65:0:0:65:2290:-202.556,-19.567,0	0/1:147:81,66:81:2884:66:2328:-162.01,0,-215.346	0/1:135:91,44:91:3264:44:1554:-98.4854,0,-253.284	1/1:359:0,359:0:0:359:12692:-1132.74,-108.07,0	1/1:221:0,221:0:0:221:7879:-705.72,-66.5276,0
chr05	22767221	.	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chr05	23094912	.	C	A	25312.4	PASS	AB=0.479758;ABP=14.79;AC=47;AF=0.252688;AN=186;AO=1605;CIGAR=1X;DP=6675;DPB=6675;DPRA=1.1008;EPP=3488.22;EPPR=10865.2;GTI=3;LEN=1;MEANALT=1.0566;MQM=59.6567;MQMR=59.8871;NS=93;NUMALT=1;ODDS=1.32577;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56169;QR=180414;RO=5066;RPL=0;RPP=3488.22;RPPR=10865.2;RPR=1605;RUN=1;SAF=1605;SAP=3488.22;SAR=0;SRF=5066;SRP=11003.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:15,13:15:532:13:451:-32.491,0,-39.7841	0/0:45:45,0:45:1586:0:0:0,-13.5463,-143.029	0/1:97:61,36:61:2184:36:1265:-84.9409,0,-167.626	0/0:166:165,1:165:5869:1:36:0,-46.3731,-524.725	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/1:54:24,30:24:843:30:1034:-77.1085,0,-59.9318	0/0:83:80,3:80:2848:3:104:0,-15.2827,-246.854	0/1:55:18,37:18:648:37:1320:-102.537,0,-42.0952	0/0:41:40,1:40:1423:1:36:0,-8.74395,-124.768	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:86:46,40:46:1627:40:1400:-100.404,0,-120.83	0/1:80:44,36:44:1554:36:1268:-90.3336,0,-116.068	0/1:31:16,15:16:563:15:528:-38.5179,0,-41.6672	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.251	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:31:31,0:31:1091:0:0:0,-9.33193,-98.4987	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:179:76,103:76:2716:103:3605:-270.77,0,-190.8	0/1:73:50,23:50:1796:23:816:-51.7834,0,-139.947	0/1:99:26,73:26:928:73:2585:-203.089,0,-54.0363	0/1:79:37,42:37:1315:42:1480:-109.713,0,-94.8697	0/1:45:40,5:40:1423:5:180:-3.00572,0,-114.82	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.105	0/0:152:152,0:152:5427:0:0:0,-45.7566,-488.559	0/0:195:195,0:195:6932:0:0:0,-58.7008,-623.87	0/1:37:18,19:18:630:19:672:-49.254,0,-45.8865	0/1:196:106,90:106:3787:90:3200:-229.22,0,-282.027	0/1:71:32,39:32:1140:39:1377:-102.854,0,-81.5361	0/0:79:79,0:79:2807:0:0:0,-23.7814,-252.87	0/1:5:3,2:3:108:2:72:-5.33062,0,-8.57002	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:201:201,0:201:7115:0:0:0,-60.507,-640.415	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.578	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.48	.:.:.:.:.:.:.:.	0/1:287:161,126:161:5754:126:4368:-306.815,0,-431.481	0/0:33:33,0:33:1163:0:0:0,-9.93399,-104.976	0/1:125:70,55:70:2500:55:1891:-132.76,0,-186.245	0/1:52:25,27:25:892:27:951:-70.2493,0,-64.9461	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.667	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.089	0/1:108:62,46:62:2203:46:1586:-110.514,0,-166.024	0/1:128:70,58:70:2486:58:2029:-144.348,0,-184.833	0/0:44:44,0:44:1559:0:0:0,-13.2453,-140.578	0/0:187:187,0:187:6660:0:0:0,-56.2926,-598.945	0/0:109:108,0:108:3856:0:0:0,-32.5112,-347.025	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:164:103,61:103:3695:61:2115:-141.213,0,-283.375	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.135	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:125:73,52:73:2612:52:1791:-123.835,0,-196.922	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	1/1:7:0,7:0:0:7:248:-22.6638,-2.10721,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:35:34,1:34:1220:1:32:0,-7.33674,-106.838	0/1:84:49,35:49:1736:35:1214:-84.2735,0,-131.238	0/1:6:4,2:4:144:2:72:-5.02702,0,-11.5074	0/1:175:96,79:96:3440:79:2746:-194.703,0,-257.077	0/1:46:21,25:21:748:25:854:-63.2646,0,-53.7978	0/1:32:15,17:15:536:17:578:-42.631,0,-38.9419	0/1:69:38,31:38:1351:31:1108:-78.768,0,-101.119	0/0:132:130,2:130:4629:2:72:0,-32.8992,-409.867	0/1:100:37,62:37:1307:62:2190:-167.197,0,-87.7635	0/1:17:8,9:8:270:9:312:-23.2961,0,-19.5101	0/1:22:12,10:12:428:10:356:-25.7586,0,-32.2361	0/1:34:21,12:21:756:12:420:-27.8396,0,-58.0734	0/1:9:5,4:5:172:4:140:-10.1638,0,-13.1087	0/0:92:92,0:92:3271:0:0:0,-27.6948,-294.611	0/0:63:62,1:62:2202:1:36:0,-15.3666,-194.572	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.695	0/0:140:140,0:140:4954:0:0:0,-42.1442,-445.745	0/1:71:34,37:34:1216:37:1265:-92.6633,0,-88.3734	0/0:71:71,0:71:2530:0:0:0,-21.3731,-227.951	0/1:5:3,2:3:99:2:72:-5.33157,0,-7.73143	0/0:97:97,0:97:3459:0:0:0,-29.1999,-311.523	0/1:95:48,46:48:1720:46:1591:-114.808,0,-126.429	0/0:128:128,0:128:4560:0:0:0,-38.5318,-410.563	0/0:56:56,0:56:1983:0:0:0,-16.8577,-178.744	0/1:68:32,36:32:1139:36:1275:-94.5818,0,-82.3483	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.001	0/1:120:59,61:59:2099:61:2159:-158.453,0,-153.055	0/1:25:10,15:10:360:15:524:-39.8457,0,-25.2152	0/0:70:70,0:70:2482:0:0:0,-21.0721,-223.633	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.564	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/1:59:26,33:26:928:33:1149:-85.9516,0,-66.0729	0/1:56:16,40:16:572:40:1424:-111.599,0,-34.9557	0/0:123:122,1:122:4329:1:32:0,-33.8274,-386.587	0/0:89:89,0:89:3175:0:0:0,-26.7917,-285.974
chr05	23502839	.	T	A	87526.7	PASS	AB=0.641088;ABP=359.01;AC=133;AF=0.707447;AN=188;AO=4136;CIGAR=1X;DP=4958;DPB=4958;DPRA=9.77668;EPP=8906.22;EPPR=1781.45;GTI=13;LEN=1;MEANALT=1.03261;MQM=59.9678;MQMR=59.9963;NS=94;NUMALT=1;ODDS=1.97971;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148064;QR=28957;RO=819;RPL=9;RPP=8906.22;RPPR=1781.45;RPR=4127;RUN=1;SAF=0;SAP=8984.22;SAR=4136;SRF=0;SRP=1781.45;SRR=819;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:144:0,143:0:0:143:5131:-461.562,-43.0473,0	0/1:75:32,43:32:1114:43:1544:-116.676,0,-77.9859	1/1:126:3,123:3:108:123:4390:-385.197,-27.8546,0	0/1:28:3,25:3:108:25:896:-72.5315,0,-1.64633	1/1:34:2,32:2:72:32:1152:-97.1534,-3.3983,0	0/1:82:14,68:14:489:68:2431:-194.36,0,-19.6544	1/1:114:5,109:5:161:109:3901:-336.477,-19.5124,0	0/1:28:12,16:12:417:16:567:-42.9319,0,-29.4314	1/1:107:0,107:0:0:107:3844:-345.997,-32.2102,0	1/1:33:0,33:0:0:33:1165:-105.155,-9.93399,0	0/1:23:12,11:12:416:11:385:-27.629,0,-30.8479	0/1:26:11,15:11:384:15:540:-41.1098,0,-27.0679	0/1:50:16,34:16:568:34:1200:-93.2514,0,-36.4004	1/1:21:0,21:0:0:21:747:-67.5543,-6.32163,0	1/1:26:1,25:1:36:25:896:-77.3621,-4.22851,0	1/1:40:0,40:0:0:40:1426:-128.636,-12.0412,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:65:17,48:17:600:48:1720:-135.501,0,-34.7622	0/1:40:14,26:14:496:26:927:-71.7068,0,-32.9331	0/1:26:18,8:18:644:8:288:-18.4406,0,-50.4638	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	1/1:78:2,76:2:72:76:2724:-238.566,-16.6436,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:212:7,205:7:252:205:7353:-638.785,-40.7894,0	1/1:117:3,114:3:108:114:4079:-357.221,-25.1453,0	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:129:46,83:46:1640:83:2974:-229.059,0,-109.056	0/1:104:23,81:23:805:81:2894:-229.388,0,-41.4604	1/1:94:0,94:0:0:94:3334:-300.276,-28.2968,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:17:4,13:4:144:13:468:-37.3136,0,-8.19611	0/1:24:21,3:21:752:3:108:-2.85045,0,-60.7815	0/1:20:16,4:16:576:4:144:-7.29302,0,-46.1544	0/1:28:13,15:13:460:15:532:-39.7839,0,-33.3065	1/1:79:0,79:0:0:79:2819:-253.949,-23.7814,0	1/1:125:1,124:1:36:124:4437:-395.901,-34.0305,0	0/1:27:3,24:3:104:24:853:-68.9616,0,-1.575	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:83:26,57:26:890:57:2044:-159.246,0,-55.4231	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:72:32,40:32:1137:40:1432:-107.503,0,-80.9628	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	1/1:33:1,31:1:36:31:1101:-95.8002,-6.39451,0	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	0/1:41:11,30:11:366:30:1080:-85.171,0,-20.9163	0/1:84:30,54:30:1068:54:1935:-149.139,0,-71.1455	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:115:8,107:8:288:107:3840:-319.528,-8.35104,0	1/1:88:2,86:2:72:86:3084:-270.951,-19.6539,0	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:42:15,27:15:536:27:972:-75.1546,0,-35.9316	1/1:57:5,52:5:180:52:1864:-151.487,-0.606645,0	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/1:61:28,33:28:984:33:1177:-87.8739,0,-70.5106	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:65:0,65:0:0:65:2309:-208.069,-19.567,0	0/1:55:22,33:22:792:33:1180:-89.9514,0,-55.049	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:117:41,75:41:1464:75:2677:-205.895,0,-96.7768	0/1:103:30,73:30:1072:73:2615:-204.591,0,-65.7864	0/1:37:13,24:13:453:24:856:-66.223,0,-29.9615	0/1:33:11,22:11:392:22:788:-61.3108,0,-25.6861	1/1:111:1,110:1:36:110:3956:-352.631,-29.8161,0	0/1:65:34,31:34:1208:31:1109:-80.5537,0,-89.4591	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/1:53:7,46:7:248:46:1652:-133.014,0,-6.7096	0/1:37:11,26:11:377:26:936:-73.4214,0,-23.1198	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:76:0,76:0:0:76:2715:-244.564,-22.8783,0	1/1:55:5,50:5:180:50:1796:-145.37,-0.00458536,0	1/1:83:5,78:5:180:78:2808:-236.406,-8.43343,0	1/1:118:10,108:10:341:108:3880:-318.376,-4.50377,0	0/1:30:10,20:10:330:20:712:-55.3758,0,-20.9864	1/1:64:1,63:1:36:63:2253:-199.434,-15.6676,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:76:3,73:3:108:73:2624:-226.332,-12.8031,0	0/1:52:25,27:25:877:27:972:-72.1443,0,-63.5916	1/1:116:3,113:3:104:113:4043:-354.354,-25.2167,0	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	0/1:29:8,21:8:284:21:756:-59.6374,0,-17.1735	1/1:29:0,29:0:0:29:1036:-93.5534,-8.72987,0	0/1:51:20,31:20:712:31:1088:-82.8748,0,-49.0541	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:34:0,34:0:0:34:1209:-109.112,-10.235,0	1/1:38:1,37:1:36:37:1324:-115.864,-7.84087,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:36:12,24:12:424:24:864:-67.2455,0,-27.6593	0/1:22:9,13:9:312:13:468:-35.837,0,-21.7927	1/1:74:1,73:1:36:73:2609:-231.458,-18.6779,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0
chr05	23524090	.	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chr05	23529434	.	A	G	45754.8	PASS	AB=0.510219;ABP=6.64963;AC=49;AF=0.260638;AN=188;AO=2076;CIGAR=1X;DP=8375;DPB=8375;DPRA=1.18198;EPP=24.6999;EPPR=37.0158;GTI=2;LEN=1;MEANALT=1.03333;MQM=50.5164;MQMR=58.3693;NS=94;NUMALT=1;ODDS=1.6706;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73141;QR=221393;RO=6296;RPL=3;RPP=4484.97;RPPR=13613.9;RPR=2073;RUN=1;SAF=969;SAP=22.9301;SAR=1107;SRF=2994;SRP=35.7286;SRR=3302;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:12,13:12:413:13:443:-32.5289,0,-29.9606	0/0:89:89,0:89:3164:0:0:0,-26.7917,-284.783	0/1:155:78,77:78:2769:77:2705:-195.204,0,-202.595	0/0:125:123,1:123:4310:1:36:0,-34.1269,-384.348	0/0:23:23,0:23:790:0:0:0,-6.92369,-70.5318	0/0:30:29,1:29:1022:1:36:0,-5.45747,-87.9756	0/1:84:34,50:34:1197:50:1788:-135.28,0,-82.7469	0/0:117:117,0:117:4132:0:0:0,-35.2205,-371.843	0/1:96:43,53:43:1484:53:1877:-138.962,0,-103.188	0/0:81:81,0:81:2864:0:0:0,-24.3834,-257.844	0/0:98:98,0:98:3440:0:0:0,-29.5009,-309.01	0/1:153:87,66:87:3052:66:2326:-162.916,0,-228.06	0/1:156:68,88:68:2423:88:3098:-230.842,0,-170.947	0/1:141:84,57:84:2937:57:2009:-135.605,0,-221.377	0/0:131:130,1:130:4543:1:36:0,-35.8763,-403.533	0/0:98:98,0:98:3464:0:0:0,-29.5009,-310.989	0/0:165:165,0:165:5797:0:0:0,-49.6699,-521.355	0/0:86:86,0:86:3023:0:0:0,-25.8886,-270.688	0/0:73:73,0:73:2585:0:0:0,-21.9752,-231.934	0/1:70:28,42:28:1000:42:1489:-112.313,0,-68.6148	0/1:96:53,43:53:1887:43:1544:-109.666,0,-141.169	0/1:39:15,24:15:540:24:852:-64.8873,0,-37.1513	0/1:64:34,30:34:1165:30:1061:-75.9385,0,-83.8373	0/0:47:45,2:45:1582:2:72:0,-7.34642,-135.711	0/0:77:77,0:77:2709:0:0:0,-23.1793,-243.294	0/0:107:106,1:106:3716:1:27:0,-29.5156,-331.946	0/0:188:188,0:188:6376:0:0:0,-56.5936,-572.713	0/1:68:39,29:39:1392:29:987:-68.1959,0,-103.746	0/1:139:72,67:72:2531:67:2395:-172.633,0,-184.26	0/1:66:39,27:39:1380:27:927:-63.6018,0,-104.595	0/0:66:66,0:66:2368:0:0:0,-19.868,-212.816	1/1:4:0,4:0:0:4:144:-13.1972,-1.20412,0	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.172	1/1:4:0,4:0:0:4:144:-13.2595,-1.20412,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7837	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:262:258,4:258:9051:4:144:0,-65.5614,-800.886	0/0:40:40,0:40:1378:0:0:0,-12.0412,-124.282	0/0:126:126,0:126:4464:0:0:0,-37.9298,-401.087	0/1:4:2,2:2:72:2:72:-5.59787,0,-5.63098	0/1:117:66,51:66:2256:51:1815:-127.28,0,-167.957	0/0:72:72,0:72:2504:0:0:0,-21.6742,-225.525	0/1:95:54,41:54:1847:41:1460:-102.491,0,-137.57	0/1:127:74,53:74:2620:53:1841:-126.505,0,-196.74	0/0:98:98,0:98:3413:0:0:0,-29.5009,-307.383	0/0:50:50,0:50:1756:0:0:0,-15.0515,-158.318	0/1:55:22,33:22:769:33:1157:-87.4415,0,-52.8341	0/1:125:66,59:66:2330:59:2078:-147.903,0,-172.319	0/0:61:61,0:61:2169:0:0:0,-18.3628,-194.818	0/0:112:112,0:112:3957:0:0:0,-33.7154,-356.063	0/0:59:59,0:59:2074:0:0:0,-17.7608,-186.881	0/1:5:3,2:3:108:2:68:-4.93465,0,-8.5676	0/1:99:51,48:51:1807:48:1711:-123.95,0,-133.018	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.916	0/1:5:3,2:3:108:2:68:-4.92445,0,-8.55964	0/1:118:66,52:66:2322:52:1800:-125.916,0,-173.564	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.1565	0/1:6:5,1:5:180:1:36:-1.74234,0,-14.7425	0/1:7:6,1:6:212:1:36:-1.44131,0,-17.3172	0/0:74:74,0:74:2633:0:0:0,-22.2762,-237.027	0/1:164:72,92:72:2555:92:3234:-239.663,0,-180.745	0/1:3:2,1:2:72:1:36:-2.69259,0,-5.93363	0/1:107:47,60:47:1646:60:2147:-158.01,0,-115.723	0/1:132:58,74:58:2053:74:2565:-190.069,0,-144.677	0/1:90:53,37:53:1892:37:1308:-90.0593,0,-143.389	0/1:36:18,18:18:644:18:644:-47.1512,0,-47.4535	0/0:92:92,0:92:3244:0:0:0,-27.6948,-291.376	0/1:124:36,88:36:1239:88:3084:-239.702,0,-74.4744	0/1:106:56,50:56:2000:50:1770:-125.773,0,-148.322	0/1:62:32,30:32:1144:30:1049:-75.2622,0,-84.3222	0/1:157:69,88:69:2431:88:3109:-228.853,0,-167.958	0/1:17:5,12:5:176:12:421:-32.3047,0,-11.0675	0/0:55:55,0:55:1938:0:0:0,-16.5566,-174.276	0/0:94:94,0:94:3282:0:0:0,-28.2968,-295.334	0/0:159:157,1:157:5464:1:21:0,-45.7484,-489.048	0/0:120:120,0:120:4191:0:0:0,-36.1236,-377.373	0/1:78:49,29:49:1709:29:1010:-67.2777,0,-127.199	0/0:132:131,1:131:4619:1:36:0,-36.1625,-410.946	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.6326	0/0:92:90,2:90:3209:2:72:0,-20.8677,-281.94	0/1:112:43,69:43:1495:69:2460:-186.655,0,-100.759	0/0:132:131,1:131:4683:1:36:0,-36.1403,-418.018	0/0:104:103,0:103:3618:0:0:0,-31.0061,-325.47	0/1:152:66,86:66:2322:86:3015:-222.95,0,-162.455	0/0:115:114,1:114:3981:1:27:0,-31.9239,-355.538	0/1:220:120,100:120:4241:100:3496:-245.821,0,-315.629	0/1:51:27,24:27:959:24:838:-59.8964,0,-69.4063	0/0:108:108,0:108:3842:0:0:0,-32.5112,-345.592	0/0:108:108,0:108:3828:0:0:0,-32.5112,-344.563	0/0:110:110,0:110:3871:0:0:0,-33.1133,-348.341	0/1:153:67,86:67:2345:86:3052:-226.801,0,-165.132	0/1:129:39,90:39:1367:90:3185:-246.09,0,-84.4859	0/0:134:133,1:133:4674:1:36:0,-36.7423,-417.22	0/0:175:171,4:171:6033:4:136:0,-40.1663,-530.212
chr05	23623994	.	GGTTC	AGTTC,AGTTT	150470	PASS	AB=0.4793,0.51431;ABP=16.4054,9.41129;AC=141,47;AF=0.75,0.25;AN=188;AO=5179,1857;CIGAR=1X4M,1X3M1X;DP=7081;DPB=7081.4;DPRA=38.0591,1.11146;EPP=11231.7,4035.43;EPPR=11.6962;GTI=1;LEN=1,5;MEANALT=1.93548,2.4;MQM=59.9896,59.9208;MQMR=60;NS=94;NUMALT=2;ODDS=2.89728;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=1;QA=185376,65103;QR=142;RO=4;RPL=5177,1857;RPP=11231.7,4035.43;RPPR=11.6962;RPR=2,0;RUN=1,1;SAF=0,0;SAP=11249.1,4035.43;SAR=5179,1857;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,12,13:0:0:12,13:432,457:-72.803,-37.5499,-33.9375,-35.6088,0,-31.6954	1/1:103:0,102,0:0:0:102,0:3656,0:-328.993,-30.7051,0,-328.993,-30.7051,-328.993	1/2:150:0,67,83:0:0:67,83:2412,2941:-436.75,-239.94,-219.771,-197.167,0,-172.181	1/1:164:0,162,0:0:0:162,0:5785,0:-520.464,-48.7669,0,-520.464,-48.7669,-520.464	1/1:55:0,55,0:0:0:55,0:1968,0:-177.394,-16.5567,0,-177.394,-16.5567,-177.394	1/1:44:0,44,0:0:0:44,0:1567,0:-141.321,-13.2453,0,-141.321,-13.2453,-141.321	1/2:138:0,59,78:0:0:59,78:2107,2762:-396.816,-225.033,-207.272,-171.827,0,-148.347	1/1:142:0,141,0:0:0:141,0:5051,0:-454.513,-42.4452,0,-454.513,-42.4452,-454.513	1/2:46:0,15,31:0:0:15,31:521,1083:-130.8,-88.4467,-83.9313,-42.7009,0,-33.3689	1/1:86:0,84,1:0:0:84,1:3012,36:-270.944,-25.2865,0,-268.006,-22.3491,-267.705	1/1:50:0,50,0:0:0:50,0:1800,0:-162.282,-15.0515,0,-162.282,-15.0515,-162.282	1/2:49:0,27,22:0:0:27,22:964,778:-142.314,-63.7197,-55.5919,-78.949,0,-72.3264	1/2:34:0,20,14:0:0:20,14:711,503:-99.3308,-41.3933,-35.3727,-58.295,0,-54.0806	1/2:83:0,37,45:0:0:37,45:1324,1591:-237.54,-129.572,-118.433,-107.964,0,-94.4179	1/1:26:0,26,0:0:0:26,0:924,0:-83.4777,-7.82678,0,-83.4777,-7.82678,-83.4777	1/1:44:0,44,0:0:0:44,0:1580,0:-142.492,-13.2453,0,-142.492,-13.2453,-142.492	1/1:78:0,77,0:0:0:77,0:2764,0:-248.641,-23.1793,0,-248.641,-23.1793,-248.641	1/1:41:0,41,0:0:0:41,0:1476,0:-133.136,-12.3422,0,-133.136,-12.3422,-133.136	1/1:33:0,33,0:0:0:33,0:1176,0:-106.148,-9.93399,0,-106.148,-9.93399,-106.148	1/2:223:2,116,103:2:70:116,103:4140,3598:-623.961,-287.051,-257.827,-331.887,0,-306.576	1/2:110:0,50,60:0:0:50,60:1796,2103:-317.993,-171.478,-156.426,-146.871,0,-128.809	1/2:149:0,47,101:0:0:47,101:1692,3562:-428.219,-290.158,-276.009,-138.187,0,-107.783	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.0469,0,-14.4449	1/1:84:0,82,1:0:0:82,1:2936,36:-264.108,-24.6845,0,-261.171,-21.7171,-260.87	1/1:61:0,60,0:0:0:60,0:2129,0:-191.517,-18.0618,0,-191.517,-18.0618,-191.517	1/1:199:0,198,0:0:0:198,0:7085,0:-637.428,-59.6039,0,-637.428,-59.6039,-637.428	1/1:128:0,128,0:0:0:128,0:4579,0:-412.27,-38.5318,0,-412.27,-38.5318,-412.27	1/2:9:0,6,3:0:0:6,3:216,103:-26.3421,-8.70651,-6.90033,-17.9843,0,-17.0812	1/2:257:0,119,136:0:0:119,136:4255,4778:-735.911,-388.959,-353.136,-347.02,0,-306.08	1/2:106:0,57,49:0:0:57,49:2048,1725:-307.861,-140.783,-123.625,-167.433,0,-152.682	1/1:39:0,39,0:0:0:39,0:1404,0:-126.659,-11.7402,0,-126.659,-11.7402,-126.659	1/2:6:0,1,5:0:0:1,5:36,173:-17.3442,-14.4044,-14.1034,-3.29724,0,-1.79209	1/1:17:0,17,0:0:0:17,0:592,0:-53.6064,-5.11751,0,-53.6064,-5.11751,-53.6064	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:86:0,85,0:0:0:85,0:3056,0:-274.909,-25.5876,0,-274.909,-25.5876,-274.909	1/1:183:0,182,0:0:0:182,0:6476,0:-582.566,-54.7875,0,-582.566,-54.7875,-582.566	1/1:44:0,43,0:0:0:43,0:1548,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	2/2:2:0,0,2:0:0:0,2:0,69:-6.55254,-6.55254,-6.55254,-0.60206,-0.60206,0	1/2:139:0,77,62:0:0:77,62:2764,2156:-401.111,-175.642,-152.463,-225.822,0,-207.158	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/2:134:0,76,57:0:0:76,57:2732,2015:-387.062,-164.173,-141.295,-222.953,0,-205.794	1/2:21:0,8,12:0:0:8,12:288,411:-56.8524,-33.347,-30.9387,-23.4993,0,-19.887	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/1:51:0,49,0:0:0:49,0:1760,0:-158.401,-14.7505,0,-158.401,-14.7505,-158.401	1/2:75:0,43,32:0:0:43,32:1548,1117:-217.519,-91.2036,-78.2593,-126.669,0,-117.036	1/2:134:1,66,66:1:36:66,66:2368,2297:-376.679,-183.824,-166.893,-190.213,0,-173.282	1/1:102:0,102,0:0:0:102,0:3652,0:-328.884,-30.7051,0,-328.884,-30.7051,-328.884	1/1:95:0,95,0:0:0:95,0:3379,0:-304.325,-28.5979,0,-304.325,-28.5979,-304.325	1/1:167:0,165,1:0:0:165,1:5928,36:-533.266,-49.67,0,-530.328,-46.7325,-530.027	1/2:10:0,3,7:0:0:3,7:108,242:-28.8257,-20.0092,-19.1061,-9.17208,0,-7.06487	1/2:146:0,84,62:0:0:84,62:2990,2186:-421.902,-178.211,-152.925,-244.044,0,-225.381	1/1:37:0,36,0:0:0:36,0:1287,0:-115.822,-10.8371,0,-115.822,-10.8371,-115.822	1/2:41:0,21,19:0:0:21,19:752,663:-115.303,-53.9706,-47.649,-61.382,0,-55.6625	1/2:88:0,50,36:0:0:50,36:1796,1265:-249.365,-102.848,-87.7969,-146.511,0,-135.674	1/1:14:0,13,1:0:0:13,1:464,36:-41.7379,-3.91339,0,-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chr05	23853839	.	T	C	120010	PASS	AB=0.517143;ABP=14.6995;AC=59;AF=0.31383;AN=188;AO=5929;CIGAR=1X;DP=12820;DPB=12820;DPRA=1.65242;EPP=12877.7;EPPR=14962.3;GTI=11;LEN=1;MEANALT=1.01923;MQM=59.9766;MQMR=59.9817;NS=94;NUMALT=1;ODDS=2.71505;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211769;QR=246491;RO=6889;RPL=5929;RPP=12877.7;RPPR=14962.3;RPR=0;RUN=1;SAF=0;SAP=12877.7;SAR=5929;SRF=0;SRP=14962.3;SRR=6889;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:34,20:34:1216:20:716:-48.5121,0,-93.4909	0/0:118:118,0:118:4232:0:0:0,-35.5215,-380.972	0/1:217:119,98:119:4264:98:3497:-249.562,0,-318.615	0/0:244:244,0:244:8744:0:0:0,-73.4513,-786.949	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:42:42,0:42:1473:0:0:0,-12.6433,-132.86	0/1:87:44,43:44:1561:43:1521:-110.991,0,-114.59	0/0:149:149,0:149:5333:0:0:0,-44.8535,-480.102	0/1:150:76,74:76:2720:74:2630:-191.788,0,-199.889	0/0:44:44,0:44:1549:0:0:0,-13.2453,-139.629	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:99:55,44:55:1968:44:1576:-112.33,0,-147.593	0/1:78:45,33:45:1612:33:1180:-83.0277,0,-121.89	0/1:48:23,25:23:820:25:900:-66.8716,0,-59.6731	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:174:88,86:88:3152:86:3073:-224.418,0,-231.526	0/1:220:97,123:97:3472:123:4393:-329.316,0,-246.465	0/1:111:45,66:45:1608:66:2349:-178.253,0,-111.596	0/1:171:84,87:84:3012:87:3113:-228.919,0,-219.835	0/1:92:83,9:83:2969:9:324:-1.8111,0,-239.746	0/0:118:118,0:118:4221:0:0:0,-35.5215,-380.069	0/0:244:244,0:244:8704:0:0:0,-73.4513,-783.356	0/0:400:400,0:400:14336:0:0:0,-120.412,-1289.99	0/1:26:14,12:14:500:12:432:-31.3944,0,-37.5094	0/1:217:110,107:110:3925:107:3817:-278.403,0,-288.119	0/1:119:59,60:59:2120:60:2160:-158.844,0,-155.246	0/0:133:133,0:133:4764:0:0:0,-40.037,-428.917	1/1:429:4,425:4:144:425:15188:-1353.32,-115.828,0	0/1:21:16,5:16:576:5:180:-10.2304,0,-45.8534	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:176:176,0:176:6316:0:0:0,-52.9813,-568.53	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	1/1:318:0,318:0:0:318:11356:-1021.91,-95.7275,0	0/1:118:64,54:64:2304:54:1910:-136.652,0,-172.099	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:207:110,97:110:3917:97:3450:-248.398,0,-290.41	0/1:49:28,21:28:1008:21:756:-53.6168,0,-76.2859	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:141:141,0:141:5008:0:0:0,-42.4452,-450.872	0/1:149:92,57:92:3297:57:2036:-138.659,0,-252.093	0/1:191:86,105:86:3072:105:3749:-280.112,0,-219.212	0/0:96:96,0:96:3429:0:0:0,-28.8989,-308.822	0/0:105:105,0:105:3748:0:0:0,-31.6081,-337.521	0/0:129:128,1:128:4550:1:36:0,-35.2346,-406.068	1/1:342:1,340:1:36:340:12126:-1087.61,-99.3928,0	0/1:106:65,41:65:2320:41:1476:-101.227,0,-177.151	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	1/1:278:2,276:2:72:276:9861:-880.578,-76.8496,0	0/1:136:70,66:70:2505:66:2341:-170.008,0,-184.76	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	1/1:341:0,341:0:0:341:12209:-1097.94,-102.651,0	1/1:363:3,360:3:108:360:12890:-1149.84,-99.1987,0	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/1:81:39,42:39:1400:42:1508:-111.631,0,-101.916	1/1:285:1,284:1:36:284:10155:-910.278,-82.1953,0	0/1:138:87,51:87:3096:51:1811:-121.727,0,-237.327	0/1:146:77,69:77:2768:69:2472:-178.783,0,-205.41	0/1:63:32,31:32:1148:31:1116:-81.7868,0,-84.6649	0/1:136:56,80:56:2016:80:2853:-216.066,0,-140.773	0/0:199:198,1:198:7065:1:36:0,-56.3067,-631.687	0/1:250:53,197:53:1896:197:7052:-559.484,0,-95.6606	1/1:194:13,181:13:468:181:6468:-539.748,-15.9402,0	0/1:43:19,24:19:680:24:864:-65.1383,0,-48.5849	0/1:29:12,17:12:424:17:608:-46.3222,0,-29.7665	1/1:425:6,419:6:216:419:14928:-1323.46,-108.147,0	0/0:121:121,0:121:4336:0:0:0,-36.4246,-390.415	0/0:107:106,1:106:3796:1:36:0,-28.6119,-338.24	0/0:145:145,0:145:5188:0:0:0,-43.6493,-466.115	0/0:177:177,0:177:6332:0:0:0,-53.2823,-569.972	0/1:125:79,46:79:2813:46:1626:-108.996,0,-215.78	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	1/1:622:8,614:8:273:614:21946:-1949.37,-162.34,0	0/0:149:149,0:149:5356:0:0:0,-44.8535,-482.17	0/1:84:34,50:34:1212:50:1773:-134.565,0,-84.0998	0/0:223:223,0:223:7976:0:0:0,-67.1297,-717.863	0/1:58:33,25:33:1184:25:896:-63.5006,0,-89.4086	0/1:88:46,42:46:1652:42:1500:-108.804,0,-122.478	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/1:113:64,49:64:2300:49:1714:-120.525,0,-173.244	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:80:79,0:79:2805:0:0:0,-23.7814,-252.33	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:311:40,271:40:1432:271:9686:-778.069,0,-35.5573	0/1:54:19,35:19:680:35:1260:-97.4499,0,-45.2735	0/0:150:150,0:150:5388:0:0:0,-45.1545,-485.049	0/0:112:112,0:112:3997:0:0:0,-33.7154,-359.919
chr05	23962805	.	C	G	150073	PASS	AB=0.468744;ABP=46.5839;AC=141;AF=0.75;AN=188;AO=7176;CIGAR=1X;DP=9924;DPB=9924;DPRA=30.7981;EPP=15524.8;EPPR=5907.36;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.9136;MQMR=51.51;NS=94;NUMALT=1;ODDS=0.473438;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256443;QR=98036;RO=2743;RPL=6;RPP=15533.4;RPPR=5907.36;RPR=7170;RUN=1;SAF=7175;SAP=15576.8;SAR=1;SRF=2743;SRP=5959.36;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:23,14:23:820:14:496:-33.8362,0,-62.6035	1/1:135:1,134:1:36:134:4798:-428.38,-37.0603,0	0/1:166:101,65:101:3616:65:2301:-157.346,0,-273.06	1/1:181:0,181:0:0:181:6452:-580.757,-54.4864,0	1/1:92:0,92:0:0:92:3300:-297.206,-27.6948,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:199:91,108:91:3235:108:3850:-286.791,0,-230.777	1/1:95:0,95:0:0:95:3408:-306.932,-28.5979,0	0/1:113:60,53:60:2123:53:1904:-137.609,0,-155.974	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:50:30,20:30:1072:20:720:-50.0773,0,-80.2887	0/1:79:39,40:39:1391:40:1432:-105.324,0,-100.471	0/1:46:20,26:20:720:26:932:-70.3515,0,-51.068	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:56:0,56:0:0:56:2012:-181.35,-16.8577,0	1/1:57:0,57:0:0:57:2040:-183.869,-17.1587,0	1/1:30:1,29:1:36:29:1040:-90.3152,-5.43263,0	0/1:295:133,162:133:4747:162:5811:-434.268,0,-337.397	0/1:195:110,85:110:3939:85:3029:-214.138,0,-292.405	0/1:218:143,75:143:5100:75:2685:-176.269,0,-392.694	0/1:130:77,53:77:2751:53:1904:-132.504,0,-207.722	1/1:134:9,125:9:324:125:4452:-371.654,-11.1478,0	1/1:72:0,72:0:0:72:2561:-230.736,-21.6742,0	1/1:296:0,296:0:0:296:10560:-950.314,-89.1049,0	1/1:199:0,198:0:0:198:7064:-635.549,-59.6039,0	0/1:34:15,19:15:536:19:684:-51.6553,0,-37.9085	0/1:313:171,142:171:6102:142:5069:-362.095,0,-453.758	0/1:90:43,47:43:1532:47:1688:-125.114,0,-110.068	1/1:146:0,146:0:0:146:5207:-468.766,-43.9504,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.38236	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7896,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:166:0,166:0:0:166:5960:-536.505,-49.971,0	1/1:259:0,259:0:0:259:9284:-835.436,-77.9668,0	1/1:38:0,38:0:0:38:1364:-123.058,-11.4391,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0422	0/1:95:51,44:51:1824:44:1551:-111.282,0,-134.832	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:236:112,123:112:4003:123:4397:-324.794,0,-287.257	0/1:45:26,19:26:928:19:676:-47.6216,0,-69.7377	1/1:67:0,67:0:0:67:2397:-215.986,-20.169,0	1/1:118:0,118:0:0:118:4193:-377.524,-35.5215,0	0/1:148:75,73:75:2676:73:2612:-190.775,0,-194.792	0/1:188:84,104:84:3004:104:3711:-277.595,0,-213.129	1/1:149:0,149:0:0:149:5340:-480.732,-44.8535,0	1/1:127:1,126:1:36:126:4497:-401.307,-34.6394,0	1/1:205:0,205:0:0:205:7337:-660.377,-61.7112,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.3873	0/1:255:131,124:131:4676:124:4399:-319.085,0,-340.24	1/1:47:0,47:0:0:47:1684:-151.846,-14.1484,0	0/1:7:3,4:3:108:4:144:-11.1773,0,-7.91334	0/1:187:92,94:92:3295:94:3367:-247.018,0,-238.031	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9339	0/1:11:4,7:4:144:7:252:-19.7176,0,-9.98857	1/1:87:0,87:0:0:87:3113:-280.396,-26.1896,0	0/1:91:46,45:46:1652:45:1616:-118.336,0,-121.118	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:288:145,143:145:5183:143:5104:-372.806,0,-377.808	0/1:360:204,156:204:7311:156:5581:-394.037,0,-547.897	0/1:58:23,35:23:819:35:1256:-95.8855,0,-56.3289	0/1:107:58,47:58:2076:47:1676:-119.187,0,-153.565	1/1:238:0,238:0:0:238:8537:-768.314,-71.6451,0	0/1:173:123,50:123:4404:50:1788:-109.124,0,-343.057	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.1865	0/1:79:44,35:44:1572:35:1252:-89.2019,0,-116.556	0/1:74:25,49:25:888:49:1745:-134.899,0,-57.6825	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4009	1/1:48:0,48:0:0:48:1700:-153.279,-14.4494,0	1/1:57:0,57:0:0:57:2036:-183.509,-17.1587,0	1/1:168:0,168:0:0:168:5979:-538.213,-50.573,0	1/1:191:0,191:0:0:191:6848:-616.385,-57.4967,0	0/1:99:69,30:69:2460:30:1076:-67.3509,0,-189.132	1/1:98:0,98:0:0:98:3524:-317.365,-29.5009,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:116:0,116:0:0:116:4141:-372.87,-34.9195,0	0/1:189:96,93:96:3448:93:3303:-240.559,0,-251.396	1/1:311:0,311:0:0:311:11070:-996.119,-93.6203,0	0/1:121:57,64:57:2035:64:2271:-168.198,0,-146.286	0/1:51:30,21:30:1067:21:751:-52.5634,0,-80.7731	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	0/1:111:50,61:50:1800:61:2181:-163.141,0,-128.111	0/1:30:17,13:17:608:13:468:-33.4287,0,-45.7204	1/1:70:0,70:0:0:70:2491:-224.441,-21.0721,0	1/1:45:0,45:0:0:45:1620:-146.086,-13.5464,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:69:47,22:47:1688:22:792:-50.8346,0,-129.372	0/1:63:41,22:41:1463:22:788:-52.2799,0,-112.5	1/1:176:0,176:0:0:176:6244:-561.957,-52.9813,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0
chr05	23962813	.	CAGAAAATAAG	GAGAAAATAAG,GAGAAAAAAAAG	209928	PASS	AB=0.466602,0.513398;ABP=52.9061,11.0401;AC=141,47;AF=0.75,0.25;AN=188;AO=7149,2662;CIGAR=1X10M,1X2M1I4M1X3M;DP=9948;DPB=10193.8;DPRA=30.8727,1.21182;EPP=15483.5,5783.47;EPPR=9.52472;GTI=1;LEN=1,12;MEANALT=2.57609,3.4375;MQM=59.9285,51.4132;MQMR=60;NS=94;NUMALT=2;ODDS=1.03718;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=72,72;PQR=0;PRO=0;QA=256006,93836;QR=107;RO=3;RPL=7143,2662;RPP=15474.8,5783.47;RPPR=9.52472;RPR=6,0;RUN=1,1;SAF=7148,2662;SAP=15518.2,5783.47;SAR=1,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:37:0,14,22:0:0:14,22:504,779:-104.21,-63.0834,-58.8689,-41.1257,0,-34.503	1/1:139:0,138,1:0:0:138,1:4914,36:-442.039,-41.5421,0,-439.119,-38.2644,-438.818	1/2:166:1,64,100:1:35:64,100:2283,3533:-468.382,-282.576,-266.158,-183.259,0,-156.004	1/1:179:0,179,0:0:0:179,0:6427,0:-578.515,-53.8844,0,-578.515,-53.8844,-578.515	1/1:92:1,90,0:1:36:90,0:3224,0:-286.778,-24.1549,0,-287.079,-27.0927,-290.016	1/1:27:0,27,0:0:0:27,0:964,0:-87.0652,-8.12781,0,-87.0652,-8.12781,-87.0652	1/2:199:0,107,91:0:0:107,91:3826,3214:-572.791,-260.819,-228.609,-311.967,0,-284.573	1/1:95:0,95,0:0:0:95,0:3385,0:-304.863,-28.5979,0,-304.863,-28.5979,-304.863	1/2:110:0,52,57:0:0:52,57:1868,1988:-313.171,-160.79,-145.137,-152.354,0,-135.195	1/1:98:0,97,0:0:0:97,0:3480,0:-313.051,-29.1999,0,-313.051,-29.1999,-313.051	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/2:48:0,19,28:0:0:19,28:684,976:-134.349,-78.5326,-72.813,-55.8109,0,-47.3821	1/2:81:0,42,35:0:0:42,35:1502,1238:-222.701,-100.295,-87.6518,-122.434,0,-111.898	1/2:45:0,25,19:0:0:25,19:900,659:-126.826,-53.3833,-45.8575,-73.4366,0,-67.717	1/1:49:0,46,0:0:0:46,0:1656,0:-148.972,-13.8474,0,-148.972,-13.8474,-148.972	1/1:54:0,54,0:0:0:54,0:1944,0:-175.236,-16.2556,0,-175.236,-16.2556,-175.236	1/1:58:0,58,0:0:0:58,0:2076,0:-187.089,-17.4597,0,-187.089,-17.4597,-187.089	1/1:56:0,56,0:0:0:56,0:1992,0:-179.549,-16.8577,0,-179.549,-16.8577,-179.549	1/1:30:0,29,0:0:0:29,0:1040,0:-93.5537,-8.72987,0,-93.5537,-8.72987,-93.5537	1/2:294:0,162,126:0:0:162,126:5792,4429:-831.786,-359.543,-310.776,-472.247,0,-434.317	1/2:196:0,86,99:0:0:86,99:3084,3492:-533.914,-282.369,-256.481,-251.55,0,-221.748	1/2:221:0,76,140:0:0:76,140:2713,4950:-623.438,-402.259,-379.381,-221.164,0,-179.019	1/2:133:0,56,75:0:0:56,75:2008,2641:-377.936,-214.156,-197.298,-163.776,0,-141.199	1/1:133:0,124,9:0:0:124,9:4439,312:-399.33,-37.3277,0,-374.268,-11.9219,-371.559	1/1:71:0,70,0:0:0:70,0:2504,0:-225.234,-21.0721,0,-225.234,-21.0721,-225.234	1/1:297:0,295,0:0:0:295,0:10579,0:-951.658,-88.8039,0,-951.658,-88.8039,-951.658	1/1:196:0,193,0:0:0:193,0:6920,0:-622.457,-58.0988,0,-622.457,-58.0988,-622.457	1/2:35:0,20,14:0:0:20,14:720,504:-99.5137,-40.7635,-34.7429,-58.7557,0,-54.5413	1/2:314:0,143,162:0:0:143,162:5119,5690:-879.672,-462.223,-419.176,-417.448,0,-368.681	1/2:90:0,45,41:0:0:45,41:1620,1444:-248.752,-116.564,-103.017,-132.184,0,-119.842	1/1:145:0,144,0:0:0:144,0:5131,0:-461.589,-43.3483,0,-461.589,-43.3483,-461.589	1/2:4:0,3,1:0:0:3,1:108,36:-12.0986,-3.28545,-2.38236,-9.17208,0,-8.87105	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:6:0,6,0:0:0:6,0:216,0:-19.7896,-1.80618,0,-19.7896,-1.80618,-19.7896	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:168:0,168,0:0:0:168,0:6028,0:-542.612,-50.573,0,-542.612,-50.573,-542.612	1/1:262:0,258,0:0:0:258,0:9256,0:-832.595,-77.6657,0,-832.595,-77.6657,-832.595	1/1:38:0,38,0:0:0:38,0:1368,0:-123.42,-11.4391,0,-123.42,-11.4391,-123.42	2/2:3:0,0,3:0:0:0,3:0,108:-10.0422,-10.0422,-10.0422,-0.90309,-0.90309,0	1/2:95:0,42,51:0:0:42,51:1508,1803:-269.166,-146.15,-133.507,-123.043,0,-107.69	1/1:31:0,29,0:0:0:29,0:1044,0:-93.9243,-8.72987,0,-93.9243,-8.72987,-93.9243	1/2:239:1,124,110:1:36:124,110:4429,3884:-672.523,-311.725,-277.335,-358.164,0,-327.988	1/2:45:0,19,26:0:0:19,26:684,910:-129.863,-74.0475,-68.3279,-56.1708,0,-48.344	1/1:64:0,64,0:0:0:64,0:2284,0:-205.822,-19.2659,0,-205.822,-19.2659,-205.822	1/1:116:0,116,0:0:0:116,0:4153,0:-373.722,-34.9195,0,-373.722,-34.9195,-373.722	1/2:150:0,74,74:0:0:74,74:2652,2601:-426.529,-210.234,-187.957,-216.294,0,-194.018	1/2:189:0,100,82:0:0:100,82:3584,2881:-526.113,-233.804,-203.701,-292.304,0,-267.62	1/1:149:0,149,0:0:0:149,0:5348,0:-481.451,-44.8535,0,-481.451,-44.8535,-481.451	1/1:126:0,125,1:0:0:125,1:4483,36:-403.25,-37.6288,0,-400.319,-34.3384,-400.018	1/1:209:0,206,0:0:0:206,0:7366,0:-662.626,-62.0122,0,-662.626,-62.0122,-662.626	1/2:4:0,3,1:0:0:3,1:108,36:-12.1032,-3.29039,-2.3873,-9.17208,0,-8.87105	1/2:256:0,124,130:0:0:124,130:4443,4519:-726.047,-363.924,-326.597,-362.154,0,-323.02	1/1:48:0,47,0:0:0:47,0:1688,0:-151.845,-14.1484,0,-151.845,-14.1484,-151.845	1/2:7:0,4,3:0:0:4,3:144,107:-20.752,-9.02812,-7.824,-12.0804,0,-11.1773	1/2:182:0,89,89:0:0:89,89:3191,3142:-513.758,-253.555,-226.764,-260.183,0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chr05	24084635	.	G	C	163853	PASS	AB=0.455022;ABP=86.8098;AC=141;AF=0.75;AN=188;AO=7869;CIGAR=1X;DP=10489;DPB=10489;DPRA=0;EPP=17090.3;EPPR=5674.9;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.9717;MQMR=59.9855;NS=94;NUMALT=1;ODDS=0.525645;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277954;QR=91237;RO=2612;RPL=0;RPP=17090.3;RPPR=5674.9;RPR=7869;RUN=1;SAF=0;SAP=17090.3;SAR=7869;SRF=0;SRP=5674.9;SRR=2612;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:19,29:19:649:29:1004:-76.2188,0,-44.2787	1/1:163:0,163:0:0:163:5777:-520.047,-49.0679,0	0/1:157:64,93:64:2238:93:3288:-248.879,0,-154.42	1/1:236:2,234:2:72:234:8250:-735.679,-64.2064,0	1/1:91:0,91:0:0:91:3209:-289.032,-27.3937,0	1/1:50:0,50:0:0:50:1766:-159.222,-15.0515,0	0/1:142:69,73:69:2376:73:2607:-192.132,0,-171.348	1/1:193:0,193:0:0:193:6728:-605.603,-58.0988,0	0/1:143:73,69:73:2561:69:2445:-177.346,0,-187.783	1/1:110:0,110:0:0:110:3886:-349.934,-33.1133,0	1/1:54:0,54:0:0:54:1868:-168.303,-16.2556,0	0/1:61:33,28:33:1123:28:980:-70.1482,0,-82.6886	0/1:62:32,30:32:1095:30:1064:-77.4078,0,-80.1883	0/1:50:24,26:24:835:26:923:-68.3353,0,-60.415	1/1:62:0,62:0:0:62:2203:-198.535,-18.6639,0	1/1:39:0,39:0:0:39:1380:-124.499,-11.7402,0	1/1:59:0,58:0:0:58:2052:-184.59,-17.4597,0	1/1:62:0,62:0:0:62:2190:-197.365,-18.6639,0	1/1:33:0,33:0:0:33:1154:-104.165,-9.93399,0	0/1:221:130,91:130:4505:91:3247:-225.924,0,-339.092	0/1:172:89,83:89:3088:83:2931:-212.25,0,-226.368	0/1:197:156,40:156:5420:40:1420:-68.7346,0,-428.576	0/1:138:66,72:66:2324:72:2567:-189.738,0,-167.874	1/1:156:11,145:11:378:145:5063:-421.47,-12.6116,0	1/1:123:0,122:0:0:122:4297:-386.548,-36.7257,0	1/1:390:1,389:1:36:389:13805:-1238.35,-113.803,0	1/1:227:0,227:0:0:227:8072:-726.503,-68.3338,0	0/1:49:24,25:24:838:25:875:-64.3148,0,-60.9859	0/1:239:144,95:144:5022:95:3356:-230.311,0,-380.184	0/1:130:76,54:76:2690:54:1909:-132.952,0,-203.211	1/1:179:0,179:0:0:179:6351:-571.685,-53.8844,0	0/1:10:5,5:5:165:5:180:-13.5418,0,-12.1633	1/1:42:0,42:0:0:42:1474:-132.95,-12.6433,0	1/1:10:0,10:0:0:10:344:-31.2921,-3.0103,0	1/1:20:0,20:0:0:20:709:-64.1347,-6.0206,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:188:0,188:0:0:188:6620:-595.887,-56.5936,0	1/1:283:0,283:0:0:283:10030:-902.585,-85.1915,0	1/1:65:0,65:0:0:65:2264:-204.019,-19.567,0	0/1:16:10,6:10:345:6:212:-14.6083,0,-26.5643	0/1:149:67,82:67:2368:82:2910:-217.174,0,-168.523	1/1:47:0,47:0:0:47:1649:-148.696,-14.1484,0	0/1:157:104,52:104:3633:52:1864:-120.719,0,-279.855	0/1:82:50,32:50:1718:32:1127:-77.053,0,-130.214	1/1:37:0,37:0:0:37:1299:-117.21,-11.1381,0	1/1:125:0,125:0:0:125:4426:-398.513,-37.6288,0	0/1:134:76,58:76:2676:58:2060:-145.333,0,-200.747	0/1:190:110,80:110:3858:80:2872:-201.521,0,-290.223	1/1:128:0,128:0:0:128:4504:-405.532,-38.5318,0	1/1:134:0,134:0:0:134:4779:-430.268,-40.338,0	1/1:213:0,213:0:0:213:7539:-678.557,-64.1194,0	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:162:91,71:91:3202:71:2491:-175.675,0,-239.637	1/1:31:0,31:0:0:31:1089:-98.3168,-9.33193,0	0/1:29:9,20:9:324:20:712:-55.6768,0,-20.776	0/1:140:76,64:76:2677:64:2279:-163.227,0,-199.029	1/1:66:1,65:1:36:65:2281:-201.95,-16.2697,0	0/1:20:7,13:7:243:13:459:-35.6235,0,-16.1869	0/1:15:4,11:4:144:11:392:-31.1046,0,-8.79817	1/1:83:0,82:0:0:82:2915:-262.226,-24.6845,0	0/1:115:71,44:71:2425:44:1560:-106.073,0,-183.886	0/1:10:4,6:4:144:6:192:-14.5831,0,-10.3033	0/1:279:125,154:125:4386:154:5442:-405.924,0,-310.926	0/1:255:150,105:150:5282:105:3707:-257.071,0,-398.754	0/1:71:45,26:45:1567:26:922:-61.9243,0,-119.944	0/1:77:24,53:24:852:53:1865:-144.948,0,-53.8211	1/1:244:1,243:1:36:243:8540:-765.011,-69.853,0	0/1:168:112,56:112:3964:56:1972:-127.179,0,-306.38	0/1:14:10,4:10:351:4:144:-9.0992,0,-27.7123	0/1:65:34,31:34:1207:31:1108:-80.464,0,-89.3683	0/1:61:30,31:30:1054:31:1094:-80.4054,0,-76.8064	0/1:14:2,12:2:72:12:411:-33.102,0,-2.6223	1/1:155:0,155:0:0:155:5460:-491.534,-46.6597,0	1/1:83:0,83:0:0:83:2918:-262.855,-24.9855,0	1/1:167:0,167:0:0:167:5887:-529.927,-50.272,0	1/1:223:0,223:0:0:223:7878:-708.779,-67.1297,0	0/1:122:66,56:66:2285:56:1978:-141.565,0,-169.184	1/1:159:0,159:0:0:159:5575:-501.877,-47.8638,0	0/1:21:16,5:16:548:5:180:-10.2304,0,-43.3197	1/1:182:0,180:0:0:180:6382:-574.113,-54.1854,0	0/1:103:51,52:51:1792:52:1851:-135.863,0,-130.553	1/1:275:0,275:0:0:275:9713:-874.13,-82.7833,0	0/1:90:42,48:42:1478:48:1675:-123.94,0,-106.22	0/1:61:34,27:34:1172:27:956:-67.9929,0,-87.4183	1/1:77:0,77:0:0:77:2700:-243.241,-23.1793,0	0/1:101:49,52:49:1663:52:1823:-133.944,0,-119.544	0/1:46:18,28:18:640:28:984:-75.026,0,-44.0819	1/1:84:0,84:0:0:84:2951:-265.824,-25.2865,0	1/1:64:0,64:0:0:64:2250:-202.763,-19.2659,0	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	0/1:87:44,43:44:1548:43:1515:-110.453,0,-113.419	0/1:80:57,23:57:1988:23:815:-49.5884,0,-155.11	1/1:143:0,143:0:0:143:5063:-455.818,-43.0473,0	1/1:110:0,110:0:0:110:3908:-351.915,-33.1133,0
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chr05	24125778	.	G	T	50202	PASS	AB=0.540233;ABP=59.7971;AC=51;AF=0.271277;AN=188;AO=2213;CIGAR=1X;DP=7868;DPB=7868;DPRA=1.00426;EPP=471.531;EPPR=12269.7;GTI=0;LEN=1;MEANALT=1.03509;MQM=59.9566;MQMR=54.7929;NS=94;NUMALT=1;ODDS=0.728697;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78986;QR=201822;RO=5653;RPL=2212;RPP=4799.8;RPPR=24.5864;RPR=1;RUN=1;SAF=1451;SAP=468.823;SAR=762;SRF=2707;SRP=24.952;SRR=2946;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:24,19:24:845:19:676:-48.2237,0,-63.2703	0/0:83:81,1:81:2892:1:36:0,-21.431,-254.488	0/1:76:49,27:49:1756:27:972:-64.9196,0,-134.839	0/0:68:67,1:67:2408:1:36:0,-16.8718,-212.882	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.052	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.3792	0/1:104:41,63:41:1467:63:2256:-171.996,0,-100.681	0/0:98:98,0:98:3467:0:0:0,-29.5009,-310.682	0/1:97:43,54:43:1540:54:1906:-142.613,0,-109.24	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.18	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.258	0/1:105:71,34:71:2552:34:1224:-78.8589,0,-197.088	0/1:102:63,39:63:2260:39:1392:-94.8736,0,-171.728	0/1:94:62,32:62:2201:32:1143:-74.8819,0,-168.499	0/1:170:71,99:71:2532:99:3543:-267.902,0,-175.657	0/0:126:126,0:126:4486:0:0:0,-37.9298,-402.77	0/0:84:84,0:84:2996:0:0:0,-25.2865,-267.623	0/0:98:98,0:98:3495:0:0:0,-29.5009,-312.664	0/0:67:67,0:67:2408:0:0:0,-20.169,-215.814	0/1:153:39,114:39:1387:114:4085:-321.776,0,-78.9107	0/1:100:53,47:53:1881:47:1683:-121.653,0,-138.94	0/1:46:12,34:12:419:34:1209:-95.2658,0,-24.1676	0/1:83:35,48:35:1260:48:1698:-128.111,0,-88.5128	0/0:65:64,1:64:2277:1:36:0,-15.9687,-200.902	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.208	0/0:148:148,0:148:5292:0:0:0,-44.5524,-474.878	0/0:154:154,0:154:5502:0:0:0,-46.3586,-493.163	0/1:57:39,18:39:1378:18:634:-40.2278,0,-107.014	0/1:181:67,114:67:2384:114:4087:-313.528,0,-160.003	0/1:61:29,32:29:1044:32:1143:-84.8159,0,-75.7202	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.166	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9966	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.57877	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.21837	0/0:360:360,0:360:12837:0:0:0,-108.371,-1152.26	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.745	0/0:90:90,0:90:3171:0:0:0,-27.0927,-284.273	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:76:46,30:46:1644:30:1076:-74.27,0,-124.873	0/0:70:69,1:69:2463:1:36:0,-17.6845,-217.437	0/1:106:58,48:58:2059:48:1707:-122.006,0,-153.244	0/1:157:80,76:80:2868:76:2707:-196.554,0,-209.44	0/0:110:109,1:109:3886:1:36:0,-29.515,-344.75	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.168	0/1:58:24,34:24:844:34:1198:-90.6643,0,-58.2223	0/1:118:46,72:46:1648:72:2549:-194.138,0,-112.875	0/0:54:53,1:53:1892:1:36:0,-12.6573,-166.111	0/0:92:92,0:92:3289:0:0:0,-27.6948,-294.953	0/0:56:56,0:56:2008:0:0:0,-16.8577,-179.233	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:52:32,20:32:1152:20:716:-49.1142,0,-87.8373	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.0537	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:76:37,39:37:1328:39:1377:-101.348,0,-96.7963	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.9347	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.62706	0/0:40:40,0:40:1432:0:0:0,-12.0412,-128.81	0/1:137:56,81:56:2007:81:2916:-221.433,0,-139.058	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:98:34,64:34:1207:64:2269:-174.97,0,-79.0475	0/1:135:46,89:46:1647:89:3177:-245.515,0,-107.552	0/1:56:33,23:33:1188:23:828:-57.9864,0,-89.8525	0/1:74:21,53:21:743:53:1873:-146.571,0,-44.8547	0/0:82:78,4:78:2781:4:144:0,-11.6476,-237.085	0/1:110:18,92:18:644:92:3296:-263.746,0,-25.1222	0/1:37:30,7:30:1080:7:248:-11.5261,0,-86.1667	0/1:45:29,16:29:1032:16:568:-37.9055,0,-79.3149	0/1:165:76,89:76:2728:89:3200:-238.552,0,-194.862	1/1:18:1,17:1:36:17:599:-50.655,-1.83549,0	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.278	0/0:41:41,0:41:1468:0:0:0,-12.3422,-131.85	0/0:104:104,0:104:3720:0:0:0,-31.3071,-334.44	0/0:115:115,0:115:4115:0:0:0,-34.6184,-369.534	0/1:68:29,39:29:1031:39:1380:-104.029,0,-72.474	0/0:82:82,0:82:2932:0:0:0,-24.6845,-263.146	0/1:14:4,10:4:144:10:356:-28.1668,0,-8.7863	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.083	0/1:64:31,33:31:1108:33:1168:-86.1613,0,-80.3788	0/0:128:127,1:127:4539:1:36:0,-34.9336,-404.234	0/1:151:81,70:81:2891:70:2512:-180.876,0,-214.109	0/1:134:55,79:55:1972:79:2831:-214.69,0,-137.068	0/0:164:164,0:164:5837:0:0:0,-49.3689,-523.799	0/1:263:127,136:127:4544:136:4856:-358.021,0,-328.167	0/1:60:25,35:25:896:35:1256:-95.2835,0,-62.2739	0/0:120:120,0:120:4267:0:0:0,-36.1236,-382.717	0/0:158:158,0:158:5631:0:0:0,-47.5627,-503.489	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.444	0/1:122:75,47:75:2672:47:1680:-114.761,0,-203.671	0/1:157:50,107:50:1796:107:3804:-295.294,0,-114.38	0/0:60:59,1:59:2104:1:36:0,-14.4635,-185.101	0/0:266:266,0:266:9496:0:0:0,-80.074,-851.145
chr05	24172663	.	G	A	61412.8	PASS	AB=0.485895;ABP=12.8731;AC=48;AF=0.255319;AN=188;AO=2781;CIGAR=1X;DP=11952;DPB=11952;DPRA=1.01202;EPP=6041.88;EPPR=19848.1;GTI=1;LEN=1;MEANALT=1.03774;MQM=59.9845;MQMR=59.9674;NS=94;NUMALT=1;ODDS=5.4448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97649;QR=321979;RO=9167;RPL=1311;RPP=22.7503;RPPR=37.3959;RPR=1470;RUN=1;SAF=1311;SAP=22.7503;SAR=1470;SRF=4767;SRP=34.9153;SRR=4400;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:29,27:29:1010:27:929:-67.0596,0,-74.3519	0/0:150:150,0:150:5231:0:0:0,-45.1545,-470.936	0/1:151:70,81:70:2483:81:2885:-214.43,0,-178.268	0/0:226:226,0:226:7970:0:0:0,-68.0328,-717.331	0/0:35:35,0:35:1203:0:0:0,-10.536,-108.569	0/0:52:52,0:52:1814:0:0:0,-15.6536,-163.537	0/1:130:68,62:68:2376:62:2185:-157.781,0,-174.964	0/0:201:201,0:201:7095:0:0:0,-60.507,-638.599	0/1:132:63,69:63:2248:69:2445:-180.568,0,-162.848	0/0:210:210,0:210:7387:0:0:0,-63.2163,-663.668	0/0:117:117,0:117:4101:0:0:0,-35.2205,-369.277	0/1:140:81,59:81:2784:59:2078:-145.145,0,-208.547	0/1:152:77,75:77:2666:75:2656:-193.531,0,-194.425	0/1:116:51,65:51:1755:65:2229:-165.953,0,-123.308	0/1:170:88,82:88:3066:82:2886:-208.801,0,-224.993	0/0:107:107,0:107:3775:0:0:0,-32.2102,-339.948	0/0:116:116,0:116:4101:0:0:0,-34.9195,-369.276	0/0:133:133,0:133:4694:0:0:0,-40.037,-422.627	0/0:76:76,0:76:2659:0:0:0,-22.8783,-239.556	0/1:166:92,74:92:3190:74:2614:-185.538,0,-237.352	0/1:262:153,109:153:5384:109:3831:-266.12,0,-405.828	0/1:50:13,37:13:455:37:1307:-102.879,0,-26.2305	0/1:141:79,62:79:2781:62:2129:-149.427,0,-208.086	0/1:105:95,10:95:3315:10:356:-0.773098,0,-266.961	0/0:53:53,0:53:1854:0:0:0,-15.9546,-166.361	0/0:329:328,1:328:11536:1:36:0,-95.4406,-1034.54	0/0:375:375,0:375:13188:0:0:0,-112.886,-1186.72	0/1:65:35,30:35:1217:30:1051:-75.3327,0,-90.2643	0/1:266:128,137:128:4545:137:4856:-357.064,0,-329.086	0/1:149:74,75:74:2624:75:2637:-192.724,0,-191.554	0/0:172:172,0:172:6061:0:0:0,-51.7772,-545.596	0/1:5:2,3:2:72:3:89:-6.79921,0,-5.33157	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4406	0/0:336:336,0:336:11805:0:0:0,-101.146,-1062.33	0/0:99:99,0:99:3482:0:0:0,-29.802,-313.596	0/0:99:99,0:99:3448:0:0:0,-29.802,-310.533	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:144:81,63:81:2874:63:2209:-155.726,0,-215.549	0/0:71:71,0:71:2462:0:0:0,-21.3731,-221.829	0/1:132:58,74:58:2046:74:2596:-194.153,0,-144.675	0/1:196:106,90:106:3670:90:3162:-225.804,0,-271.504	0/0:125:124,0:124:4327:0:0:0,-37.3277,-389.252	0/0:147:147,0:147:5182:0:0:0,-44.2514,-466.502	0/1:101:51,50:51:1788:50:1746:-127.016,0,-130.795	0/1:200:105,95:105:3683:95:3358:-242.233,0,-271.471	0/0:114:114,0:114:4054:0:0:0,-34.3174,-365.026	0/0:198:198,0:198:6942:0:0:0,-59.6039,-624.856	0/0:55:54,1:54:1928:1:36:0,-12.9584,-170.198	0/1:7:1,6:1:32:6:199:-16.1283,0,-1.0921	0/1:109:41,68:41:1427:68:2401:-183.489,0,-95.9099	0/0:60:60,0:60:2124:0:0:0,-18.0618,-191.429	0/1:11:7,4:7:248:4:136:-9.26421,0,-19.3529	0/1:136:63,73:63:2231:73:2578:-191.33,0,-160.114	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:24:16,8:16:564:8:268:-17.2211,0,-43.8656	0/0:116:115,0:115:4008:0:0:0,-34.6184,-360.555	0/1:193:100,92:100:3514:92:3229:-232.675,0,-258.317	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:220:106,114:106:3721:114:4016:-295.406,0,-268.867	0/1:209:106,103:106:3750:103:3603:-261.565,0,-274.788	0/1:74:37,37:37:1285:37:1287:-93.851,0,-93.6722	0/1:91:42,49:42:1479:49:1738:-129.311,0,-106.01	0/0:191:188,3:188:6657:3:108:0,-47.4216,-589.138	0/1:154:56,98:56:1974:98:3428:-262.375,0,-131.575	0/1:86:44,42:44:1548:42:1480:-107.583,0,-113.72	0/1:70:37,33:37:1308:33:1172:-84.7154,0,-96.9494	0/1:129:72,57:72:2526:57:1960:-137.838,0,-188.757	0/1:32:24,8:24:856:8:280:-15.9063,0,-67.7281	0/0:103:103,0:103:3639:0:0:0,-31.0061,-327.719	0/0:149:149,0:149:5253:0:0:0,-44.8535,-472.904	0/0:267:267,0:267:9316:0:0:0,-80.375,-838.427	0/0:176:176,0:176:6163:0:0:0,-52.9813,-554.755	0/1:99:60,39:60:2126:39:1388:-95.417,0,-161.805	0/0:212:212,0:212:7377:0:0:0,-63.8184,-663.99	0/1:14:9,5:9:311:5:172:-11.6036,0,-24.1093	0/0:113:113,0:113:4024:0:0:0,-34.0164,-362.351	0/1:136:68,68:68:2388:68:2370:-172.614,0,-174.237	0/0:232:231,1:231:8086:1:36:0,-66.2407,-724.174	0/1:165:84,81:84:2929:81:2821:-204.46,0,-214.175	0/1:127:68,59:68:2403:59:2103:-151.308,0,-178.266	0/0:152:152,0:152:5294:0:0:0,-45.7566,-476.604	0/1:252:142,110:142:4983:110:3881:-273.626,0,-372.759	0/1:62:23,39:23:828:39:1356:-103.672,0,-56.1803	0/0:116:116,0:116:4034:0:0:0,-34.9195,-363.234	0/0:125:125,0:125:4407:0:0:0,-37.6287,-396.806	0/0:118:118,0:118:4190:0:0:0,-35.5215,-377.284	0/1:140:77,63:77:2656:63:2192:-155.398,0,-197.14	0/1:123:42,81:42:1468:81:2821:-217.101,0,-95.385	0/0:164:164,0:164:5780:0:0:0,-49.3689,-520.321	0/0:260:258,2:258:9075:2:72:0,-71.4311,-809.907
chr05	24198082	.	GGT	AGA,GGA	191950	PASS	AB=0.421711,0.574879;ABP=190.354,174.389;AC=138,50;AF=0.734043,0.265957;AN=188;AO=5164,2031;CIGAR=1X1M1X,2M1X;DP=7223;DPB=7223.67;DPRA=77.6559,0.878069;EPP=1979.46,37.2674;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.84946,2.23636;MQM=59.9777,60;MQMR=60;NS=94;NUMALT=2;ODDS=1.07243;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=182037,72424;QR=21;RO=1;RPL=5,2;RPP=11173.1,4395.92;RPPR=5.18177;RPR=5159,2029;RUN=1,1;SAF=3671,1107;SAP=1997.74,38.8155;SAR=1493,924;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:29:0,12,17:0:0:12,17:425,599:-83.742,-49.1206,-45.5082,-34.9747,0,-29.8571	1/1:39:0,39,0:0:0:39,0:1379,0:-124.408,-11.7402,0,-124.408,-11.7402,-124.408	1/2:70:0,18,51:0:0:18,51:624,1828:-199.802,-149.089,-143.67,-50.7043,0,-35.3517	1/1:128:0,128,0:0:0:128,0:4473,0:-402.744,-38.5318,0,-402.744,-38.5318,-402.744	1/1:32:0,31,0:0:0:31,0:1101,0:-99.1183,-9.33193,0,-99.1183,-9.33193,-99.1183	1/1:12:0,12,0:0:0:12,0:428,0:-38.859,-3.61236,0,-38.859,-3.61236,-38.859	1/2:90:0,48,42:0:0:48,42:1682,1484:-258.072,-121.208,-106.759,-137.215,0,-124.572	1/1:43:0,43,0:0:0:43,0:1529,0:-137.903,-12.9443,0,-137.903,-12.9443,-137.903	1/2:51:0,8,43:0:0:8,43:286,1540:-149.269,-125.949,-123.541,-23.6772,0,-10.733	1/1:94:0,93,0:0:0:93,0:3265,0:-293.734,-27.9958,0,-293.734,-27.9958,-293.734	1/1:162:0,162,0:0:0:162,0:5693,0:-512.484,-48.7669,0,-512.484,-48.7669,-512.484	1/2:126:0,49,77:0:0:49,77:1730,2756:-365.981,-225.103,-210.352,-141.233,0,-118.054	1/2:134:0,51,82:0:0:51,82:1815,2952:-388.79,-240.868,-225.516,-147.919,0,-123.235	1/2:114:0,40,74:0:0:40,74:1433,2648:-333.159,-216.29,-204.249,-117.227,0,-94.9505	1/2:113:0,45,66:0:0:45,66:1589,2347:-320.753,-191.353,-177.806,-129.485,0,-109.617	1/1:104:0,103,0:0:0:103,0:3666,0:-329.784,-31.0061,0,-329.784,-31.0061,-329.784	1/1:88:0,87,0:0:0:87,0:3075,0:-276.619,-26.1896,0,-276.619,-26.1896,-276.619	1/1:76:0,76,0:0:0:76,0:2695,0:-242.795,-22.8783,0,-242.795,-22.8783,-242.795	1/1:99:0,97,1:0:0:97,1:3381,36:-304.148,-29.1999,0,-301.211,-26.2625,-300.91	1/2:92:0,45,47:0:0:45,47:1561,1670:-263.319,-136.439,-122.892,-127.232,0,-113.083	1/2:46:0,13,33:0:0:13,33:468,1155:-132.51,-94.321,-90.4076,-38.5463,0,-28.6123	1/2:33:0,4,29:0:0:4,29:136,1014:-93.8688,-82.839,-81.6349,-11.3708,0,-2.64097	1/2:81:0,37,43:0:0:37,43:1309,1510:-229.655,-123.033,-111.895,-106.759,0,-93.8148	1/2:68:0,56,12:0:0:56,12:1957,428:-194.436,-35.2464,-18.3888,-159.545,0,-155.933	1/1:26:0,26,0:0:0:26,0:932,0:-84.1991,-7.82678,0,-84.1991,-7.82678,-84.1991	1/1:160:0,158,0:0:0:158,0:5543,0:-498.693,-47.5627,0,-498.693,-47.5627,-498.693	1/1:62:0,62,0:0:0:62,0:2197,0:-197.996,-18.6639,0,-197.996,-18.6639,-197.996	1/2:65:1,19,45:1:21:19,45:673,1611:-184.455,-129.934,-125.8,-53.3783,0,-41.4136	1/2:111:0,59,51:0:0:59,51:2037,1824:-314.216,-148.729,-130.968,-165.479,0,-150.127	1/2:59:0,25,34:0:0:25,34:886,1204:-170.609,-98.4308,-90.9051,-72.5327,0,-62.2977	1/1:83:0,83,0:0:0:83,0:2920,0:-263.038,-24.9855,0,-263.038,-24.9855,-263.038	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/1:9:0,9,0:0:0:9,0:318,0:-28.9604,-2.70927,0,-28.9604,-2.70927,-28.9604	1/1:3:0,3,0:0:0:3,0:106,0:-9.8891,-0.90309,0,-9.8891,-0.90309,-9.8891	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:10:0,10,0:0:0:10,0:355,0:-32.2904,-3.0103,0,-32.2904,-3.0103,-32.2904	1/1:342:0,342,0:0:0:342,0:12067,0:-1085.9,-102.952,0,-1085.9,-102.952,-1085.9	1/1:24:0,24,0:0:0:24,0:853,0:-77.0899,-7.22472,0,-77.0899,-7.22472,-77.0899	1/1:119:0,117,2:0:0:117,2:4150,68:-373.344,-35.2205,0,-367.828,-29.3649,-367.226	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:72:0,31,41:0:0:31,41:1100,1467:-209.604,-119.983,-110.651,-89.9772,0,-77.635	1/1:62:0,62,0:0:0:62,0:2215,0:-199.613,-18.6639,0,-199.613,-18.6639,-199.613	1/2:42:0,9,33:0:0:9,33:322,1188:-123.551,-97.2946,-94.5853,-26.6149,0,-16.681	1/2:161:0,70,91:0:0:70,91:2451,3241:-463.938,-264.518,-243.446,-199.773,0,-172.379	1/1:141:0,141,0:0:0:141,0:4946,0:-445.296,-42.4452,0,-445.296,-42.4452,-445.296	1/1:71:0,70,0:0:0:70,0:2454,0:-220.755,-21.0721,0,-220.755,-21.0721,-220.755	1/2:53:0,21,32:0:0:21,32:741,1140:-153.614,-93.2762,-86.9546,-60.6917,0,-51.0587	1/2:85:0,42,43:0:0:42,43:1473,1536:-245.454,-125.588,-112.945,-120.219,0,-107.275	1/1:73:0,73,0:0:0:73,0:2541,0:-228.94,-21.9752,0,-228.94,-21.9752,-228.94	1/1:82:0,81,0:0:0:81,0:2820,0:-253.698,-24.3834,0,-253.698,-24.3834,-253.698	1/1:153:0,153,0:0:0:153,0:5331,0:-479.932,-46.0576,0,-479.932,-46.0576,-479.932	1/2:11:0,4,7:0:0:4,7:142,252:-32.4902,-20.9217,-19.7176,-11.9251,0,-9.81788	1/2:73:0,28,45:0:0:28,45:1006,1608:-213.533,-131.464,-123.035,-82.4274,0,-68.881	1/1:48:0,48,0:0:0:48,0:1702,0:-153.406,-14.4494,0,-153.406,-14.4494,-153.406	1/2:6:0,4,2:0:0:4,2:144,72:-17.9843,-6.23466,-5.03054,-12.1095,0,-11.5074	1/2:43:0,18,24:0:0:18,24:648,827:-120.038,-67.1584,-61.7399,-52.8735,0,-45.6488	1/1:52:0,52,0:0:0:52,0:1814,0:-163.541,-15.6536,0,-163.541,-15.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chr05	24225668	.	T	A	18183.6	PASS	AB=0.475599;ABP=15.091;AC=49;AF=0.260638;AN=188;AO=1123;CIGAR=1X;DP=4913;DPB=4913;DPRA=0.957095;EPP=2441.57;EPPR=8228.55;GTI=3;LEN=1;MEANALT=1;MQM=59.9599;MQMR=59.9786;NS=94;NUMALT=1;ODDS=1.99696;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40237;QR=135692;RO=3788;RPL=0;RPP=2441.57;RPPR=8228.55;RPR=1123;RUN=1;SAF=1123;SAP=2441.57;SAR=0;SRF=3788;SRP=8228.55;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/0:27:27,0:27:945:0:0:0,-8.12781,-85.3622	0/1:57:25,32:25:892:32:1152:-86.8314,0,-63.441	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.497	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:37:21,16:21:752:16:572:-40.6753,0,-56.8639	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:66:31,35:31:1116:35:1260:-93.8375,0,-80.8837	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:91:41,50:41:1468:50:1792:-134.169,0,-105.022	0/1:70:32,38:32:1133:38:1360:-101.628,0,-81.2046	0/1:37:20,17:20:716:17:612:-44.2753,0,-53.6296	0/1:69:30,39:30:1076:39:1404:-105.888,0,-76.3818	0/0:48:48,0:48:1700:0:0:0,-14.4494,-153.283	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:50:28,22:28:1004:22:788:-56.1933,0,-75.6244	0/1:85:43,42:43:1532:42:1508:-109.87,0,-112.586	0/1:41:15,26:15:540:26:936:-72.2172,0,-36.5943	0/1:47:32,15:32:1152:15:536:-34.4264,0,-89.8417	0/0:49:46,3:46:1648:3:108:0,-4.6753,-138.533	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:143:143,0:143:5110:0:0:0,-43.0473,-460.038	0/0:110:110,0:110:3925:0:0:0,-33.1133,-353.442	0/1:30:10,20:10:360:20:705:-54.7419,0,-23.7134	0/1:120:85,35:85:3056:35:1247:-76.4085,0,-239.145	0/1:60:35,25:35:1260:25:900:-63.2592,0,-95.6437	0/0:38:37,0:37:1320:0:0:0,-11.1381,-118.742	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:210:209,0:209:7504:0:0:0,-62.9153,-675.039	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:62:38,24:38:1368:24:860:-59.058,0,-104.721	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:40:32,8:32:1152:8:288:-14.2262,0,-91.9489	0/1:47:20,27:20:720:27:972:-73.6495,0,-50.9804	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:57:31,26:31:1112:26:932:-67.0402,0,-83.2326	0/1:83:53,30:53:1900:30:1080:-72.5278,0,-146.292	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:36:11,25:11:396:25:900:-70.4839,0,-25.1457	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:62:34,28:34:1216:28:985:-70.2977,0,-91.0827	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:72:36,36:36:1288:36:1296:-95.2698,0,-94.5494	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:107:59,48:59:2124:48:1724:-123.235,0,-159.218	0/1:58:35,23:35:1252:23:822:-56.8429,0,-95.5253	0/1:47:33,14:33:1180:14:500:-31.1878,0,-92.3596	0/1:38:28,10:28:1004:10:356:-20.9421,0,-79.2367	0/0:85:83,2:83:2961:2:72:0,-18.7508,-259.885	0/1:71:26,45:26:928:45:1620:-124.717,0,-62.4651	0/1:33:16,17:16:568:17:612:-45.4794,0,-41.5179	0/1:23:16,7:16:572:7:252:-16.1053,0,-44.8897	0/1:45:19,26:19:684:26:928:-70.2919,0,-48.1157	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.211	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:96:95,1:95:3400:1:36:0,-25.3006,-302.617	0/1:35:22,13:22:792:13:453:-30.5636,0,-61.0696	0/0:41:40,1:40:1432:1:36:0,-8.74395,-125.579	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:52:27,25:27:972:25:885:-64.313,0,-72.1443	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.77	0/1:44:20,24:20:720:24:864:-64.8372,0,-51.8835	0/1:65:31,34:31:1104:34:1220:-90.5399,0,-80.1037	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:144:80,64:80:2860:64:2288:-162.833,0,-214.289	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.839	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:72:27,45:27:972:45:1608:-123.335,0,-66.1237	0/1:72:23,49:23:828:49:1760:-137.01,0,-53.17	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.425
chr05	24225700	.	A	C	80090.1	PASS	AB=0.52921;ABP=20.2627;AC=139;AF=0.739362;AN=188;AO=3807;CIGAR=1X;DP=4914;DPB=4914;DPRA=21.3435;EPP=8252.44;EPPR=2387.32;GTI=3;LEN=1;MEANALT=1.01087;MQM=59.9748;MQMR=59.9665;NS=94;NUMALT=1;ODDS=2.02537;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135629;QR=39358;RO=1106;RPL=3805;RPP=8252.44;RPPR=2387.32;RPR=2;RUN=1;SAF=3807;SAP=8269.81;SAR=0;SRF=1106;SRP=2404.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:468:14:500:-37.2084,0,-34.3318	1/1:28:0,28:0:0:28:993:-89.6834,-8.42884,0	0/1:57:32,25:32:1144:25:900:-64.1623,0,-86.1108	1/1:110:0,110:0:0:110:3919:-352.774,-33.1133,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:37:16,21:16:546:21:733:-55.1506,0,-38.3212	1/1:67:0,67:0:0:67:2386:-214.996,-20.169,0	0/1:64:35,29:35:1241:29:1036:-74.288,0,-92.7266	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:90:48,42:48:1720:42:1471:-105.589,0,-127.993	0/1:70:38,32:38:1352:32:1139:-81.7463,0,-100.908	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2127	0/1:69:39,30:39:1388:30:1080:-76.7422,0,-104.448	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:23:0,23:0:0:23:824:-74.4815,-6.92369,0	1/1:20:0,20:0:0:20:711:-64.3156,-6.0206,0	1/1:21:0,21:0:0:21:729:-65.9285,-6.32163,0	0/1:51:22,29:22:792:29:1036:-78.2014,0,-56.2531	0/1:84:41,43:41:1472:43:1542:-113.786,0,-106.932	0/1:38:23,15:23:824:15:528:-36.4122,0,-63.0442	0/1:48:15,33:15:540:33:1188:-92.7792,0,-34.4871	1/1:48:3,45:3:104:45:1607:-135.217,-4.74663,0	1/1:51:0,51:0:0:51:1787:-161.108,-15.3525,0	1/1:145:0,145:0:0:145:5142:-462.92,-43.6494,0	1/1:111:0,111:0:0:111:3939:-354.701,-33.4143,0	0/1:29:19,10:19:680:10:360:-24.0144,0,-52.7993	0/1:122:35,86:35:1252:86:3065:-239.293,0,-76.2007	0/1:59:23,36:23:828:36:1277:-97.4703,0,-57.0833	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:209:0,209:0:0:209:7436:-669.284,-62.9153,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:62:24,38:24:834:38:1364:-104.361,0,-56.7092	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:41:9,32:9:324:32:1152:-91.6479,0,-17.1636	0/1:48:27,21:27:957:21:748:-53.1959,0,-71.9944	1/1:46:0,46:0:0:46:1616:-145.725,-13.8474,0	1/1:70:0,70:0:0:70:2497:-224.981,-21.0721,0	0/1:56:25,31:25:881:31:1108:-83.1733,0,-62.7482	0/1:82:30,52:30:1072:52:1872:-144.075,0,-72.108	1/1:69:0,69:0:0:69:2449:-220.663,-20.7711,0	1/1:51:0,51:0:0:51:1825:-164.522,-15.3525,0	1/1:73:0,73:0:0:73:2596:-233.888,-21.9752,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:36:25,11:25:885:11:396:-25.1457,0,-69.1294	1/1:22:0,22:0:0:22:769:-69.5261,-6.62266,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:62:28,34:28:978:34:1220:-91.4429,0,-69.6648	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:11:2,9:2:72:9:318:-25.649,0,-3.52539	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:44:0,44:0:0:44:1565:-141.14,-13.2453,0	0/1:69:35,34:35:1230:34:1209:-88.3431,0,-90.2289	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/1:106:46,60:46:1656:60:2151:-161.947,0,-117.419	0/1:58:23,35:23:820:35:1237:-94.172,0,-56.6628	0/1:46:14,32:14:500:32:1148:-89.7825,0,-31.4888	0/1:38:10,28:10:352:28:995:-78.4249,0,-20.5791	1/1:85:2,83:2:72:83:2931:-257.186,-18.7508,0	0/1:69:44,25:44:1557:25:889:-59.557,0,-119.649	0/1:32:17,15:17:589:15:514:-36.9492,0,-43.7003	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/1:43:24,19:24:860:19:680:-48.5849,0,-64.7775	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:99:0,99:0:0:99:3524:-317.37,-29.802,0	1/1:64:0,64:0:0:64:2279:-205.372,-19.2659,0	1/1:53:0,53:0:0:53:1888:-170.198,-15.9546,0	1/1:96:0,96:0:0:96:3427:-308.644,-28.8989,0	0/1:37:13,24:13:464:24:856:-66.223,0,-30.9594	1/1:41:1,40:1:36:40:1436:-125.939,-8.74396,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:52:26,26:26:917:26:928:-68.1847,0,-67.191	1/1:121:0,121:0:0:121:4340:-390.77,-36.4246,0	0/1:45:24,21:24:860:21:737:-53.1043,0,-64.1731	0/1:66:34,32:34:1216:32:1137:-82.769,0,-89.8786	1/1:50:0,50:0:0:50:1761:-158.77,-15.0515,0	0/1:144:63,81:63:2233:81:2883:-216.356,0,-157.884	0/1:23:10,13:10:360:13:445:-33.4517,0,-25.8206	1/1:75:0,75:0:0:75:2655:-239.196,-22.5773,0	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:22:0,22:0:0:22:792:-71.595,-6.62266,0	0/1:73:45,28:45:1616:28:995:-67.8888,0,-123.752	0/1:73:49,24:49:1737:24:864:-56.1074,0,-134.637	1/1:69:0,69:0:0:69:2453:-221.023,-20.7711,0	1/1:89:0,89:0:0:89:3185:-286.872,-26.7917,0
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chr05	24225725	.	G	A	17060.5	PASS	AB=0.46787;ABP=23.3831;AC=49;AF=0.260638;AN=188;AO=1076;CIGAR=1X;DP=4796;DPB=4796;DPRA=1.1203;EPP=2339.51;EPPR=8076.54;GTI=3;LEN=1;MEANALT=1.03774;MQM=59.9963;MQMR=59.9903;NS=94;NUMALT=1;ODDS=1.82206;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38359;QR=132446;RO=3718;RPL=1076;RPP=2339.51;RPPR=8076.54;RPR=0;RUN=1;SAF=1076;SAP=2339.51;SAR=0;SRF=3718;SRP=8076.54;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:13,12:13:460:12:428:-31.3331,0,-34.2096	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/1:54:23,31:23:824:31:1112:-84.1357,0,-58.2277	0/0:108:108,0:108:3840:0:0:0,-32.5112,-345.799	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:34:19,15:19:668:15:540:-38.7015,0,-50.2106	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.689	0/1:66:31,35:31:1099:35:1252:-93.1171,0,-79.3515	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.496	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/1:86:39,47:39:1392:47:1684:-125.958,0,-99.6904	0/1:65:31,34:31:1093:34:1216:-90.1796,0,-79.1107	0/1:37:20,17:20:716:17:612:-44.2753,0,-53.6296	0/1:69:30,39:30:1076:39:1392:-104.808,0,-76.3818	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/1:50:28,22:28:976:22:792:-56.5542,0,-73.0982	0/1:80:43,37:43:1527:37:1324:-95.3797,0,-113.64	0/1:36:14,22:14:500:22:792:-60.7686,0,-34.4991	0/1:46:32,14:32:1148:14:501:-31.5793,0,-89.7825	0/0:48:45,3:45:1612:3:108:0,-4.37427,-135.295	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:143:143,0:143:5088:0:0:0,-43.0473,-458.06	0/0:104:104,0:104:3713:0:0:0,-31.3071,-334.371	0/1:27:10,17:10:360:17:603:-46.4717,0,-24.6165	0/1:122:85,37:85:3028:37:1309:-81.3842,0,-236.026	0/1:59:35,24:35:1252:24:856:-59.6003,0,-95.2243	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/0:202:200,1:200:7152:1:36:0,-57.1887,-640.219	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:57:37,20:37:1313:20:716:-47.609,0,-101.311	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/1:39:31,8:31:1112:8:284:-14.1632,0,-88.6512	0/1:46:20,26:20:720:26:932:-70.3515,0,-51.2814	0/0:44:44,0:44:1528:0:0:0,-13.2453,-137.806	0/0:67:66,1:66:2331:1:32:0,-16.9697,-206.848	0/1:52:29,23:29:1036:23:824:-58.8298,0,-77.9004	0/1:83:53,30:53:1908:30:1072:-71.807,0,-147.012	0/0:67:67,0:67:2379:0:0:0,-20.169,-214.368	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.526	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:35:11,24:11:396:24:847:-66.0127,0,-25.4467	0/0:20:20,0:20:697:0:0:0,-6.0206,-63.0506	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:62:33,29:33:1184:29:1044:-75.6109,0,-88.2045	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.9615	0/1:10:8,2:8:273:2:72:-3.82642,0,-21.8899	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:68:34,34:34:1216:34:1204:-88.1958,0,-89.2765	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:108:61,47:61:2184:47:1676:-118.616,0,-164.315	0/1:57:35,22:35:1256:22:784:-53.7252,0,-96.1866	0/1:46:32,14:32:1121:14:496:-31.1269,0,-87.3483	0/1:36:26,9:26:914:9:324:-18.61,0,-71.6791	0/0:83:81,2:81:2887:2:72:0,-18.1488,-253.23	0/1:67:25,42:25:891:42:1476:-112.963,0,-60.3398	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	0/1:22:15,7:15:531:7:244:-15.6768,0,-41.4992	0/1:44:19,25:19:671:25:877:-66.0007,0,-47.4705	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:98:98,0:98:3472:0:0:0,-29.5009,-312.692	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:94:94,0:94:3349:0:0:0,-28.2968,-301.626	0/1:36:23,13:23:807:13:468:-31.6226,0,-62.1121	0/0:41:40,1:40:1432:1:36:0,-8.74395,-125.579	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:52:27,25:27:945:25:877:-63.5916,0,-69.7087	0/0:120:119,1:119:4264:1:36:0,-32.5253,-380.34	0/1:44:21,23:21:756:23:815:-60.4252,0,-55.1219	0/1:64:31,33:31:1108:33:1176:-86.8818,0,-80.7651	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/1:138:78,60:78:2760:60:2130:-150.425,0,-207.099	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/0:76:76,0:76:2696:0:0:0,-22.8783,-242.883	0/0:57:57,0:57:2027:0:0:0,-17.1587,-182.702	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3566	0/1:70:27,43:27:952:43:1524:-116.381,0,-64.9231	0/1:73:24,49:24:860:49:1752:-135.989,0,-55.7466	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.772	0/0:88:88,0:88:3128:0:0:0,-26.4906,-281.745
chr05	24226083	.	C	T	30371.1	PASS	AB=0.492408;ABP=4.85676;AC=47;AF=0.25;AN=188;AO=1824;CIGAR=1X;DP=7872;DPB=7872;DPRA=1.03846;EPP=3929.11;EPPR=13123;GTI=2;LEN=1;MEANALT=1.03846;MQM=58.9918;MQMR=59.9803;NS=94;NUMALT=1;ODDS=1.06756;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65043;QR=216329;RO=6042;RPL=4;RPP=3929.11;RPPR=13123;RPR=1820;RUN=1;SAF=0;SAP=3963.78;SAR=1824;SRF=0;SRP=13123;SRR=6042;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:131:131,0:131:4682:0:0:0,-39.4349,-421.538	0/1:121:53,68:53:1904:68:2440:-183.32,0,-135.213	0/0:207:207,0:207:7386:0:0:0,-62.3132,-664.785	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.985	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:107:72,35:72:2577:35:1252:-80.6403,0,-199.967	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.967	0/1:57:33,24:33:1173:24:856:-60.1561,0,-88.7168	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.048	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:45:20,25:20:712:25:896:-66.2604,0,-50.8603	0/1:37:21,16:21:747:16:576:-40.8441,0,-56.4162	0/1:59:29,30:29:1029:30:1076:-79.3174,0,-75.1604	0/1:33:21,12:21:756:12:432:-29.2857,0,-58.4332	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:201:109,92:109:3897:92:3292:-235.45,0,-290.415	0/1:109:56,53:56:2008:53:1877:-136.089,0,-147.161	0/1:129:34,95:34:1220:95:3393:-266.532,0,-71.2739	0/1:29:21,7:21:747:7:252:-14.3715,0,-58.91	0/0:93:89,4:89:3188:4:144:0,-14.6822,-273.83	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.935	0/0:299:298,1:298:10677:1:36:0,-86.4097,-957.237	0/0:152:152,0:152:5444:0:0:0,-45.7566,-490.089	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:296:151,145:151:5408:145:5166:-375.901,0,-397.744	0/1:132:73,59:73:2599:59:2108:-150.208,0,-194.423	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.388	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:4,0:4:144:0:0:0,-1.20412,-12.9538	0/0:4:4,0:4:131:0:0:0,-1.20412,-12.1135	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:209:209,0:209:7496:0:0:0,-62.9153,-674.681	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/1:8:5,3:5:180:3:108:-7.62049,0,-14.1438	0/1:153:62,91:62:2224:91:3272:-248.335,0,-154.367	0/0:48:47,0:47:1688:0:0:0,-14.1484,-152.004	0/1:111:48,63:48:1724:63:2241:-168.196,0,-122.03	0/1:22:15,7:15:536:7:248:-16.0415,0,-41.9522	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.369	0/0:58:58,0:58:2055:0:0:0,-17.4597,-185.221	0/1:115:50,65:50:1796:65:2297:-172.163,0,-127.302	0/1:216:112,104:112:4008:104:3668:-264.447,0,-295.851	0/0:157:156,0:156:5582:0:0:0,-46.9607,-502.141	0/0:168:168,0:168:5997:0:0:0,-50.573,-539.797	0/0:159:159,0:159:5695:0:0:0,-47.8638,-512.667	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:132:53,79:53:1900:79:2820:-214.159,0,-131.54	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:17:11,6:11:396:6:201:-13.2995,0,-30.8652	0/1:90:48,41:48:1724:41:1425:-101.282,0,-128.319	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:4:2,2:2:72:2:72:-5.61407,0,-5.6326	0/1:21:14,7:14:504:7:252:-16.6618,0,-39.3765	0/0:99:99,0:99:3535:0:0:0,-29.802,-318.359	0/1:111:56,55:56:2012:55:1971:-144.178,0,-147.939	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:149:85,64:85:3038:64:2281:-160.583,0,-228.795	0/1:131:77,54:77:2755:54:1940:-135.29,0,-208.756	0/1:59:38,21:38:1360:21:737:-48.7825,0,-104.939	0/1:64:30,34:30:1080:34:1220:-90.3776,0,-78.2473	0/0:123:122,1:122:4364:1:36:0,-33.4284,-389.336	0/1:148:52,96:52:1864:96:3428:-264.005,0,-123.487	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:49:24,25:24:856:25:884:-64.6979,0,-62.6106	0/1:81:39,42:39:1400:42:1501:-110.987,0,-101.916	0/1:27:21,6:21:756:6:212:-11.297,0,-60.2394	0/0:104:103,0:103:3696:0:0:0,-31.0061,-332.484	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.24	0/0:159:159,0:159:5689:0:0:0,-47.8638,-512.125	0/0:137:137,0:137:4916:0:0:0,-41.2411,-442.59	0/1:101:40,61:40:1432:61:2180:-165.581,0,-98.7736	0/0:83:82,1:82:2936:1:36:0,-21.3872,-260.876	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:142:141,1:141:5056:1:36:0,-39.148,-451.586	0/1:119:66,53:66:2368:53:1889:-134.181,0,-177.555	0/0:213:213,0:213:7638:0:0:0,-64.1194,-687.449	0/1:76:45,31:45:1605:31:1116:-77.825,0,-121.86	0/1:38:24,14:24:864:14:504:-34.2364,0,-66.6434	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:72:40,32:40:1427:32:1148:-81.9309,0,-107.053	0/1:32:11,21:11:396:21:747:-57.9112,0,-26.3498	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.658	0/1:90:51,39:51:1804:39:1392:-98.4374,0,-135.546	0/1:33:18,15:18:644:15:521:-37.2814,0,-48.3566	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01
chr05	24249426	.	C	T	215397	PASS	AB=0.465697;ABP=72.582;AC=140;AF=0.744681;AN=188;AO=9998;CIGAR=1X;DP=13663;DPB=13663;DPRA=0;EPP=20709;EPPR=7782.17;GTI=0;LEN=1;MEANALT=1.02128;MQM=58.8944;MQMR=59.9866;NS=94;NUMALT=1;ODDS=1.41564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=357939;QR=130311;RO=3662;RPL=9883;RPP=20726;RPPR=7790.77;RPR=115;RUN=1;SAF=2;SAP=21696;SAR=9996;SRF=1;SRP=7946.26;SRR=3661;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:25,17:25:896:17:608:-42.2868,0,-68.3171	1/1:202:0,202:0:0:202:7224:-649.352,-60.8081,0	0/1:217:97,120:97:3455:120:4312:-322.613,0,-245.835	1/1:358:0,358:0:0:358:12817:-1152.72,-107.769,0	1/1:101:0,101:0:0:101:3605:-324.309,-30.404,0	1/1:85:1,84:1:36:84:3010:-267.31,-21.9893,0	0/1:268:150,118:150:5344:118:4236:-300.196,0,-400.42	1/1:176:0,176:0:0:176:6308:-566.413,-52.9813,0	0/1:131:70,61:70:2474:61:2171:-155.835,0,-183.476	1/1:99:0,99:0:0:99:3556:-320.178,-29.802,0	1/1:116:1,115:1:36:115:4132:-368.173,-31.3212,0	0/1:87:41,46:41:1456:46:1648:-122.312,0,-105.146	0/1:100:50,50:50:1776:50:1796:-131.77,0,-130.02	0/1:102:60,42:60:2148:42:1512:-105.577,0,-162.882	0/1:75:35,40:35:1244:40:1432:-106.567,0,-89.6874	1/1:74:0,74:0:0:74:2652:-238.741,-22.2762,0	1/1:95:0,95:0:0:95:3412:-306.714,-28.5979,0	1/1:65:1,64:1:36:64:2304:-203.657,-15.9687,0	1/1:47:0,47:0:0:47:1688:-152.028,-14.1484,0	0/1:355:153,202:153:5409:202:7232:-543.775,0,-380.081	0/1:235:117,118:117:4157:118:4223:-309.276,0,-303.572	0/1:172:135,37:135:4796:37:1328:-68.0451,0,-380.021	0/1:126:56,70:56:1999:70:2504:-187.68,0,-142.253	1/1:154:9,145:9:316:145:5169:-436.375,-17.5798,0	1/1:86:0,86:0:0:86:3066:-275.716,-25.8886,0	1/1:451:5,446:5:180:446:16008:-1423.02,-119.212,0	1/1:243:1,242:1:36:242:8668:-776.1,-69.552,0	0/1:45:22,23:22:783:23:824:-60.9314,0,-57.2466	0/1:444:235,207:235:8365:207:7371:-529.835,0,-619.446	0/1:213:122,91:122:4348:91:3268:-229.438,0,-327.378	1/1:225:0,225:0:0:225:8000:-718.75,-67.7318,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	1/1:19:0,19:0:0:19:684:-61.8142,-5.71957,0	1/1:4:0,4:0:0:4:140:-12.9409,-1.20412,0	1/1:14:0,14:0:0:14:500:-45.2548,-4.21442,0	1/1:3:0,3:0:0:3:108:-10.0724,-0.90309,0	1/1:200:2,198:2:72:198:7111:-631.777,-53.3929,0	1/1:165:0,165:0:0:165:5920:-532.523,-49.67,0	1/1:95:0,95:0:0:95:3395:-305.411,-28.5979,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:234:122,112:122:4319:112:4012:-290.393,0,-318.445	1/1:54:0,54:0:0:54:1936:-174.299,-16.2556,0	0/1:181:122,59:122:4351:59:2104:-135.023,0,-337.279	0/1:92:46,46:46:1644:46:1648:-120.874,0,-120.554	1/1:71:0,71:0:0:71:2550:-229.554,-21.3731,0	1/1:117:0,117:0:0:117:4157:-373.94,-35.2205,0	0/1:160:91,69:91:3243:69:2476:-174.797,0,-243.927	0/1:339:173,166:173:6179:166:5960:-434.202,0,-454.16	1/1:141:0,141:0:0:141:5021:-452.017,-42.4452,0	1/1:240:0,240:0:0:240:8614:-775.036,-72.2472,0	1/1:219:0,219:0:0:219:7856:-706.736,-65.9256,0	0/1:22:9,13:9:320:13:468:-35.837,0,-22.5197	0/1:187:79,108:79:2795:108:3868:-291.71,0,-195.499	1/1:161:0,161:0:0:161:5776:-519.639,-48.4658,0	0/1:12:8,4:8:284:4:144:-9.69754,0,-22.291	0/1:256:160,96:160:5698:96:3452:-233.648,0,-435.877	1/1:58:0,58:0:0:58:2076:-187.051,-17.4597,0	0/1:17:6,11:6:212:11:392:-30.5016,0,-14.3073	0/1:13:6,7:6:212:7:248:-18.7499,0,-15.5114	1/1:150:0,150:0:0:150:5372:-483.43,-45.1545,0	0/1:168:84,84:84:3000:84:3016:-220.839,0,-219.659	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:360:190,170:190:6783:170:6073:-438.157,0,-502.124	0/1:318:174,143:174:6193:143:5106:-363.619,0,-461.684	0/1:158:85,73:85:3032:73:2624:-188.797,0,-225.548	0/1:119:57,62:57:2040:62:2215:-163.69,0,-148.049	1/1:325:4,321:4:144:321:11520:-1022.44,-84.5211,0	0/1:205:139,66:139:4929:66:2362:-151.11,0,-382.053	0/1:40:20,20:20:716:20:712:-52.3645,0,-52.7265	0/1:124:59,65:59:2103:65:2320:-171.576,0,-152.211	0/1:93:51,42:51:1824:42:1504:-107.643,0,-136.445	0/1:34:11,23:11:396:23:828:-64.3787,0,-25.7477	1/1:172:0,172:0:0:172:6164:-553.664,-51.7772,0	1/1:94:0,94:0:0:94:3353:-301.615,-28.2968,0	1/1:242:0,242:0:0:242:8630:-775.462,-72.8493,0	1/1:274:0,274:0:0:274:9804:-881.981,-82.4822,0	0/1:109:65,44:65:2307:44:1576:-109.245,0,-175.079	1/1:174:3,171:3:108:171:6124:-540.927,-42.3041,0	0/1:11:3,8:3:108:8:288:-22.9502,0,-6.76384	1/1:186:1,185:1:36:185:6589:-589.259,-52.3933,0	0/1:218:113,105:113:4023:105:3768:-273.234,0,-296.635	1/1:388:0,388:0:0:388:13882:-1248.73,-116.8,0	0/1:109:58,51:58:2056:51:1832:-132.32,0,-152.499	0/1:103:54,49:54:1919:49:1760:-127.614,0,-141.98	1/1:103:0,103:0:0:103:3700:-332.884,-31.0061,0	0/1:162:71,91:71:2514:91:3252:-243.754,0,-177.745	0/1:54:29,25:29:1019:25:896:-64.5411,0,-75.7657	1/1:85:0,85:0:0:85:3046:-273.911,-25.5876,0	1/1:73:0,73:0:0:73:2619:-235.578,-21.9752,0	1/1:88:0,88:0:0:88:3152:-283.718,-26.4906,0	0/1:200:111,89:111:3951:89:3176:-225.534,0,-295.577	0/1:78:61,17:61:2171:17:608:-31.5422,0,-172.176	1/1:246:0,246:0:0:246:8780:-789.558,-74.0534,0	1/1:118:0,118:0:0:118:4228:-380.553,-35.5215,0
chr05	24344194	.	T	C	179237	PASS	AB=0.50107;ABP=3.05211;AC=138;AF=0.741935;AN=186;AO=6702;CIGAR=1X;DP=8825;DPB=8825;DPRA=31.9638;EPP=60.7102;EPPR=11.8651;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9976;MQMR=60;NS=93;NUMALT=1;ODDS=1.21332;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236080;QR=75196;RO=2121;RPL=6669;RPP=14271;RPPR=4548.1;RPR=33;RUN=1;SAF=3109;SAP=78.9101;SAR=3593;SRF=1100;SRP=9.39981;SRR=1021;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:19,23:19:684:23:828:-62.2009,0,-49.2471	1/1:135:0,135:0:0:135:4764:-428.92,-40.6391,0	0/1:162:75,87:75:2675:87:3055:-226.414,0,-192.228	1/1:128:0,128:0:0:128:4516:-406.612,-38.5318,0	1/1:56:0,56:0:0:56:1965:-177.122,-16.8577,0	1/1:39:0,39:0:0:39:1373:-123.866,-11.7402,0	0/1:117:70,47:70:2495:47:1640:-112.665,0,-189.582	1/1:140:2,138:2:72:138:4812:-426.401,-35.3075,0	0/1:95:50,45:50:1765:45:1580:-113.89,0,-130.534	1/1:112:0,111:0:0:111:3907:-351.465,-33.4143,0	1/1:98:0,98:0:0:98:3432:-309.094,-29.5009,0	0/1:155:80,75:80:2855:75:2620:-189.385,0,-210.528	0/1:132:64,68:64:2258:68:2404:-176.879,0,-163.744	0/1:137:54,83:54:1905:83:2922:-221.973,0,-130.485	0/1:99:55,44:55:1934:44:1564:-111.25,0,-144.531	1/1:114:0,114:0:0:114:4026:-362.53,-34.3174,0	1/1:138:0,138:0:0:138:4858:-437.374,-41.5421,0	1/1:117:0,117:0:0:117:4096:-368.828,-35.2205,0	1/1:78:0,78:0:0:78:2761:-248.731,-23.4803,0	0/1:169:89,80:89:3133:80:2807:-201.993,0,-231.321	0/1:157:82,75:82:2871:75:2675:-193.733,0,-211.366	0/1:34:17,17:17:612:17:600:-44.0942,0,-45.1784	0/1:64:32,32:32:1136:32:1136:-83.283,0,-83.283	1/1:102:9,93:9:324:93:3310:-268.613,-1.19921,0	1/1:65:0,65:0:0:65:2301:-207.35,-19.567,0	1/1:161:1,160:1:36:160:5616:-501.969,-44.8676,0	1/1:135:0,135:0:0:135:4776:-430.001,-40.6391,0	0/1:76:40,36:40:1416:36:1292:-93.7055,0,-104.859	0/1:148:78,70:78:2770:70:2479:-178.809,0,-204.989	0/1:59:28,31:28:992:31:1085:-80.1962,0,-71.8336	1/1:99:0,99:0:0:99:3472:-312.693,-29.802,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:317:1,316:1:36:316:11074:-992.977,-91.8282,0	1/1:63:0,63:0:0:63:2185:-196.91,-18.9649,0	1/1:110:0,110:0:0:110:3826:-344.538,-33.1133,0	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:111:49,62:49:1733:62:2189:-163.86,0,-122.838	1/1:96:0,96:0:0:96:3378:-304.239,-28.8989,0	0/1:82:40,42:40:1419:42:1504:-110.97,0,-103.322	0/1:166:85,81:85:3020:81:2865:-208.116,0,-222.062	1/1:114:0,114:0:0:114:4028:-362.711,-34.3174,0	1/1:52:0,52:0:0:52:1826:-164.62,-15.6536,0	0/1:70:36,34:36:1277:34:1197:-86.9613,0,-94.159	0/1:92:44,48:44:1563:48:1711:-126.58,0,-113.266	1/1:69:0,69:0:0:69:2435:-219.404,-20.7711,0	1/1:103:0,103:0:0:103:3642:-327.985,-31.0061,0	1/1:128:1,127:1:36:127:4505:-402.019,-34.9336,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:121:57,64:57:2032:64:2245:-165.886,0,-146.728	1/1:25:0,25:0:0:25:872:-78.7941,-7.52575,0	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:96:46,50:46:1632:50:1776:-131.224,0,-118.27	1/1:37:1,36:1:36:36:1281:-111.993,-7.53984,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	1/1:55:0,55:0:0:55:1912:-172.354,-16.5567,0	0/1:183:85,97:85:3044:97:3407:-251.699,0,-219.042	.:.:.:.:.:.:.:.	0/1:74:35,39:35:1241:39:1336:-98.2555,0,-89.7163	0/1:100:45,55:45:1600:55:1935:-144.32,0,-114.187	0/1:50:21,29:21:752:29:1025:-77.5102,0,-52.9548	0/1:40:22,18:22:762:18:631:-45.0745,0,-56.8564	1/1:103:1,102:1:36:102:3577:-318.538,-27.4078,0	0/1:80:58,22:58:2008:22:792:-47.5233,0,-156.907	0/1:65:40,25:40:1424:25:881:-60.0405,0,-108.891	0/1:77:41,36:41:1445:36:1271:-91.5128,0,-107.164	0/1:121:59,62:59:2084:62:2173:-159.409,0,-151.403	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	1/1:89:1,88:1:32:88:3131:-278.818,-23.5924,0	1/1:135:0,135:0:0:135:4777:-430.089,-40.6391,0	1/1:139:0,139:0:0:139:4908:-441.874,-41.8432,0	0/1:49:29,20:29:1036:20:708:-49.2951,0,-78.8034	1/1:135:0,135:0:0:135:4763:-428.828,-40.6391,0	0/1:17:12,5:12:424:5:171:-10.6079,0,-33.3789	1/1:100:0,100:0:0:100:3538:-318.629,-30.103,0	0/1:93:35,58:35:1229:58:2013:-153.441,0,-82.9161	1/1:146:0,146:0:0:146:5150:-463.646,-43.9504,0	0/1:168:67,101:67:2370:101:3591:-272.825,0,-162.985	0/1:92:46,46:46:1640:46:1604:-116.952,0,-120.194	1/1:160:0,160:0:0:160:5607:-504.764,-48.1648,0	0/1:244:111,133:111:3968:133:4673:-347.283,0,-283.86	0/1:67:27,40:27:937:40:1424:-108.288,0,-64.4721	1/1:119:0,119:0:0:119:4130:-371.886,-35.8226,0	1/1:127:2,125:2:72:125:4438:-392.754,-31.3941,0	1/1:62:0,62:0:0:62:2180:-196.465,-18.6639,0	0/1:132:68,64:68:2423:64:2262:-164.104,0,-178.59	0/1:119:75,44:75:2668:44:1551:-104.058,0,-204.544	1/1:93:0,93:0:0:93:3232:-291.103,-27.9958,0	1/1:216:1,215:1:36:215:7606:-680.988,-61.4242,0
chr05	24347284	.	G	A	40816.5	PASS	AB=0.488181;ABP=9.06711;AC=44;AF=0.236559;AN=186;AO=2455;CIGAR=1X;DP=10794;DPB=10794;DPRA=1.14104;EPP=5333.98;EPPR=18028.5;GTI=1;LEN=1;MEANALT=1.08;MQM=59.9768;MQMR=59.9908;NS=93;NUMALT=1;ODDS=0.176113;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87764;QR=297221;RO=8329;RPL=2455;RPP=5333.98;RPPR=18045.8;RPR=0;RUN=1;SAF=0;SAP=5333.98;SAR=2455;SRF=2;SRP=18071.8;SRR=8327;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:19,31:19:684:31:1112:-85.3398,0,-46.8388	0/0:196:196,0:196:6977:0:0:0,-59.0019,-627.928	0/1:129:65,64:65:2319:64:2296:-168.068,0,-170.137	0/0:188:187,1:187:6683:1:32:0,-53.3943,-598.348	0/0:73:73,0:73:2615:0:0:0,-21.9752,-235.597	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:72:28,44:28:1008:44:1576:-120.457,0,-69.3622	0/0:184:181,3:181:6448:3:108:0,-45.3143,-570.333	0/1:96:58,38:58:2088:38:1349:-92.8094,0,-159.291	0/0:139:139,0:139:4958:0:0:0,-41.8432,-446.342	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/1:85:46,39:46:1639:39:1396:-100.352,0,-122.21	0/1:93:53,40:53:1882:40:1436:-101.542,0,-141.661	0/1:159:72,87:72:2572:87:3124:-232.887,0,-183.866	0/1:87:44,43:44:1545:43:1540:-112.7,0,-113.15	0/0:82:81,1:81:2886:1:36:0,-21.0862,-256.378	0/0:139:137,0:137:4898:0:0:0,-41.2411,-440.685	0/0:81:81,0:81:2886:0:0:0,-24.3834,-259.976	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:195:104,91:104:3709:91:3256:-234.56,0,-275.31	0/1:134:81,53:81:2892:53:1896:-130.58,0,-220.179	0/1:114:56,58:56:2004:58:2080:-153.153,0,-146.316	0/1:221:127,94:127:4548:94:3359:-235.999,0,-342.959	0/0:190:181,9:181:6443:9:324:0,-27.6898,-550.455	0/0:77:77,0:77:2727:0:0:0,-23.1793,-245.674	0/0:314:313,1:313:11188:1:36:0,-90.9251,-1003.21	0/0:242:242,0:242:8622:0:0:0,-72.8493,-775.978	0/1:43:29,14:29:1035:14:500:-32.3919,0,-80.5188	0/1:227:138,89:138:4934:89:3169:-217.101,0,-375.876	0/1:196:96,100:96:3431:100:3565:-262.055,0,-250.001	0/0:110:110,0:110:3918:0:0:0,-33.1133,-352.813	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:280:279,0:279:9970:0:0:0,-83.9874,-896.919	0/0:244:244,0:244:8727:0:0:0,-73.4513,-785.421	0/0:79:79,0:79:2773:0:0:0,-23.7814,-249.813	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:130:73,57:73:2612:57:2040:-144.738,0,-196.194	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:170:89,81:89:3175:81:2889:-209.071,0,-234.799	0/1:111:62,49:62:2211:49:1756:-124.91,0,-165.84	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/0:116:116,0:116:4131:0:0:0,-34.9195,-371.976	0/1:154:83,71:83:2976:71:2539:-182.402,0,-221.713	0/1:191:97,94:97:3462:94:3361:-245.21,0,-254.295	0/0:140:139,0:139:4988:0:0:0,-41.8432,-448.707	0/0:155:155,0:155:5556:0:0:0,-46.6596,-500.163	0/0:165:165,0:165:5850:0:0:0,-49.6699,-526.618	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:134:70,64:70:2504:64:2289:-165.932,0,-185.275	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:80:43,37:43:1524:37:1320:-95.0195,0,-113.371	0/0:169:169,0:169:6040:0:0:0,-50.8741,-543.703	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:85:85,0:85:3039:0:0:0,-25.5875,-273.695	0/1:153:68,85:68:2424:85:3052:-228.851,0,-172.359	.:.:.:.:.:.:.:.	0/1:238:124,114:124:4408:114:4061:-294.031,0,-325.251	0/1:238:131,107:131:4687:107:3792:-269.834,0,-350.345	0/1:83:36,46:36:1288:46:1614:-120.648,0,-91.2967	0/1:86:44,42:44:1580:42:1500:-109.406,0,-116.603	0/0:205:201,3:201:7200:3:104:0,-52.0339,-638.358	0/1:116:46,70:46:1636:70:2485:-188.983,0,-112.609	0/1:39:22,17:22:792:17:608:-43.3119,0,-59.8655	0/1:90:43,47:43:1532:47:1692:-125.474,0,-111.08	0/1:106:48,57:48:1716:57:2052:-152.983,0,-122.758	0/1:18:9,9:9:315:9:316:-23.3603,0,-23.2687	0/0:132:132,0:132:4723:0:0:0,-39.736,-425.229	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/0:283:283,0:283:10096:0:0:0,-85.1915,-908.576	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.273	0/1:187:72,115:72:2565:115:4113:-314.061,0,-174.806	0/0:119:119,0:119:4238:0:0:0,-35.8226,-381.6	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.765	0/1:100:48,52:48:1716:52:1860:-137.577,0,-124.623	0/0:217:215,0:215:7696:0:0:0,-64.7214,-692.314	0/1:148:83,64:83:2954:64:2300:-162.65,0,-221.482	0/1:68:38,30:38:1356:30:1080:-77.0432,0,-101.87	0/0:115:115,0:115:4086:0:0:0,-34.6184,-367.928	0/1:191:96,95:96:3426:95:3412:-249.797,0,-251.056	0/1:50:29,21:29:1036:21:743:-52.1418,0,-78.5024	0/0:129:129,0:129:4587:0:0:0,-38.8329,-412.998	0/0:102:102,0:102:3626:0:0:0,-30.7051,-326.546	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:89:43,46:43:1526:46:1652:-122.177,0,-110.84	0/1:97:28,69:28:982:69:2476:-193.894,0,-59.4918	0/0:119:119,0:119:4234:0:0:0,-35.8226,-381.241	0/0:133:133,0:133:4696:0:0:0,-40.037,-422.805
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chr05	24348983	.	G	T	48281.8	PASS	AB=0.458774;ABP=97.9024;AC=47;AF=0.25;AN=188;AO=2960;CIGAR=1X;DP=13441;DPB=13441;DPRA=0.949919;EPP=6430.57;EPPR=21564.4;GTI=3;LEN=1;MEANALT=1.03704;MQM=59.925;MQMR=59.9701;NS=94;NUMALT=1;ODDS=2.75922;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105849;QR=374272;RO=10478;RPL=2960;RPP=6430.57;RPPR=21564.4;RPR=0;RUN=1;SAF=2960;SAP=6430.57;SAR=0;SRF=10478;SRP=22755.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:21,19:21:752:19:675:-49.0358,0,-55.9651	0/0:148:147,1:147:5233:1:36:0,-40.9542,-467.438	0/1:176:86,90:86:3071:90:3209:-235.979,0,-223.637	0/0:310:310,0:310:11047:0:0:0,-93.3193,-994.121	0/0:135:134,1:134:4795:1:36:0,-37.0408,-428.107	0/0:80:80,0:80:2861:0:0:0,-24.0824,-256.95	0/1:194:120,74:120:4252:74:2648:-180.155,0,-324.456	0/0:185:185,0:185:6586:0:0:0,-55.6905,-592.796	0/1:137:78,59:78:2792:59:2116:-149.333,0,-210.279	0/0:103:103,0:103:3693:0:0:0,-31.0061,-332.57	0/0:116:116,0:116:4129:0:0:0,-34.9195,-371.794	0/1:110:64,46:64:2275:46:1644:-115.135,0,-171.899	0/1:100:52,48:52:1855:48:1728:-125.702,0,-137.126	0/1:104:57,47:57:2021:47:1688:-120.9,0,-150.854	0/1:86:40,46:40:1409:46:1652:-123.078,0,-101.217	0/0:92:92,0:92:3289:0:0:0,-27.6948,-296.228	0/0:104:104,0:104:3715:0:0:0,-31.3071,-334.552	0/0:106:106,0:106:3780:0:0:0,-31.9092,-340.34	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/1:377:248,129:248:8887:129:4607:-301.302,0,-686.324	0/1:218:138,80:138:4902:80:2872:-193.07,0,-375.549	0/1:180:66,114:66:2372:114:4056:-311.041,0,-159.552	0/1:48:30,18:30:1076:18:644:-43.4693,0,-82.7034	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:213:213,0:213:7623:0:0:0,-64.1194,-686.107	0/0:485:485,0:485:17301:0:0:0,-146,-1556.72	0/0:339:339,0:339:12118:0:0:0,-102.049,-1090.46	0/1:45:22,23:22:775:23:811:-59.7636,0,-56.5248	0/1:489:266,223:266:9521:223:7975:-570.567,0,-709.642	0/1:188:91,97:91:3252:97:3454:-254.441,0,-236.308	0/0:164:163,1:163:5835:1:36:0,-45.7706,-521.283	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:310:310,0:310:11065:0:0:0,-93.3193,-995.695	0/0:264:264,0:264:9457:0:0:0,-79.4719,-851.078	0/0:124:124,0:124:4384:0:0:0,-37.3277,-394.737	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:224:149,75:149:5308:75:2673:-173.383,0,-410.424	0/0:63:63,0:63:2231:0:0:0,-18.9649,-201.051	0/1:151:70,81:70:2520:81:2887:-214.61,0,-181.596	0/1:108:47,61:47:1692:61:2192:-165.028,0,-120.056	0/0:119:119,0:119:4247:0:0:0,-35.8226,-382.41	0/0:178:178,0:178:6360:0:0:0,-53.5833,-572.486	0/1:168:95,73:95:3366:73:2615:-185.022,0,-252.581	0/1:219:101,118:101:3598:118:4237:-315.583,0,-258.099	0/0:154:154,0:154:5489:0:0:0,-46.3586,-494.135	0/0:215:215,0:215:7684:0:0:0,-64.7214,-691.594	0/0:157:156,1:156:5559:1:36:0,-43.6634,-496.836	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/1:267:164,103:164:5879:103:3682:-251.206,0,-448.844	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/1:23:19,4:19:684:4:144:-6.38993,0,-54.9666	0/1:186:101,85:101:3609:85:3039:-217.703,0,-269.023	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:23:14,9:14:504:9:320:-22.2187,0,-38.7744	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.684	0/1:176:99,75:99:3552:75:2692:-189.757,0,-267.148	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:300:163,137:163:5819:137:4884:-349.403,0,-433.513	0/1:244:128,116:128:4584:116:4151:-300.321,0,-339.273	0/1:76:33,43:33:1176:43:1544:-116.375,0,-83.2695	0/1:118:46,72:46:1652:72:2571:-196.118,0,-113.447	0/0:203:198,5:198:7096:5:172:0,-45.2917,-622.88	0/1:117:44,73:44:1580:73:2595:-198.577,0,-107.271	0/1:38:19,19:19:665:19:680:-50.09,0,-48.7336	0/1:110:70,40:70:2475:40:1432:-96.061,0,-189.888	0/1:138:70,68:70:2485:68:2436:-177.953,0,-182.36	0/1:37:16,21:16:576:21:752:-56.8681,0,-41.0369	0/0:226:226,0:226:8031:0:0:0,-68.0328,-722.585	0/0:76:76,0:76:2723:0:0:0,-22.8783,-245.312	0/0:256:256,0:256:9168:0:0:0,-77.0637,-825.09	0/0:318:318,0:318:11372:0:0:0,-95.7275,-1023.36	0/1:171:84,87:84:3005:87:3123:-229.818,0,-219.203	0/0:154:153,1:153:5484:1:36:0,-42.7603,-490.087	0/1:16:10,6:10:356:6:212:-14.6083,0,-27.5648	0/0:216:216,0:216:7729:0:0:0,-65.0225,-695.641	0/1:208:120,88:120:4265:88:3146:-220.749,0,-321.415	0/0:258:258,0:258:9230:0:0:0,-77.6657,-830.663	0/1:158:93,65:93:3327:65:2336:-162.866,0,-252.085	0/1:106:52,54:52:1868:54:1944:-143.327,0,-136.49	0/0:119:119,0:119:4260:0:0:0,-35.8226,-383.579	0/1:194:109,85:109:3896:85:3050:-216.301,0,-292.435	0/1:40:23,17:23:807:17:608:-43.0099,0,-60.908	0/0:129:129,0:129:4601:0:0:0,-38.8329,-414.244	0/0:104:104,0:104:3712:0:0:0,-31.3071,-334.283	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/1:181:105,76:105:3756:76:2706:-189.297,0,-283.754	0/1:95:27,67:27:968:67:2383:-186.159,0,-58.8674	0/0:163:162,1:162:5824:1:36:0,-45.4696,-520.669	0/0:104:104,0:104:3723:0:0:0,-31.3071,-335.271
chr05	24348995	.	A	G	47371.9	PASS	AB=0.451828;ABP=133.139;AC=48;AF=0.255319;AN=188;AO=2926;CIGAR=1X;DP=13512;DPB=13512;DPRA=0.904183;EPP=6278.81;EPPR=22983.7;GTI=4;LEN=1;MEANALT=1.01818;MQM=59.9282;MQMR=59.9751;NS=94;NUMALT=1;ODDS=4.83168;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103932;QR=378766;RO=10583;RPL=2916;RPP=6270.18;RPPR=22983.7;RPR=10;RUN=1;SAF=2925;SAP=6348.06;SAR=1;SRF=10583;SRP=22983.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:21,19:21:744:19:680:-49.488,0,-55.2431	0/0:147:146,1:146:5220:1:36:0,-40.6531,-466.27	0/1:175:84,91:84:3016:91:3255:-240.419,0,-218.99	0/0:315:315,0:315:11304:0:0:0,-94.8244,-1017.24	0/0:137:137,0:137:4911:0:0:0,-41.2411,-442.14	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/1:195:122,73:122:4363:73:2585:-174.186,0,-334.143	0/0:187:187,0:187:6641:0:0:0,-56.2926,-597.754	0/1:136:79,57:79:2836:57:2048:-143.647,0,-214.538	0/0:106:106,0:106:3764:0:0:0,-31.9092,-338.96	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.823	0/1:114:68,46:68:2411:46:1599:-109.878,0,-182.923	0/1:104:56,48:56:2003:48:1724:-124.138,0,-149.218	0/1:106:59,47:59:2120:47:1675:-119.127,0,-159.159	0/1:84:39,45:39:1404:45:1600:-119.002,0,-101.373	0/0:94:94,0:94:3384:0:0:0,-28.2968,-304.774	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.481	0/0:105:105,0:105:3767:0:0:0,-31.6081,-339.228	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.932	0/1:378:250,127:250:8943:127:4486:-290.064,0,-691.001	0/1:216:137,79:137:4916:79:2802:-187.398,0,-377.205	0/1:181:69,112:69:2453:112:3949:-301.117,0,-166.536	0/1:44:27,17:27:960:17:593:-40.4304,0,-73.471	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:209:209,0:209:7489:0:0:0,-62.9153,-674.05	0/0:485:484,0:484:17317:0:0:0,-145.699,-1557.95	0/0:339:339,0:339:12138:0:0:0,-102.049,-1092.27	0/1:43:23,20:23:824:20:716:-51.8234,0,-61.539	0/1:503:274,229:274:9805:229:8099:-577.515,0,-730.976	0/1:192:93,99:93:3308:99:3535:-260.48,0,-240.033	0/0:165:164,1:164:5875:1:36:0,-46.0717,-524.891	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:317:317,0:317:11304:0:0:0,-95.4265,-1017.14	0/0:261:261,0:261:9356:0:0:0,-78.5688,-841.997	0/0:127:127,0:127:4508:0:0:0,-38.2308,-405.89	0/1:3:2,1:2:72:1:21:-1.18622,0,-5.93363	0/1:227:152,75:152:5468:75:2654:-170.773,0,-423.911	0/0:65:64,0:64:2304:0:0:0,-19.2659,-207.261	0/1:150:70,80:70:2512:80:2846:-211.223,0,-181.177	0/1:108:47,61:47:1692:61:2184:-164.309,0,-120.056	0/0:120:120,0:120:4270:0:0:0,-36.1236,-384.479	0/0:181:181,0:181:6484:0:0:0,-54.4864,-583.645	0/1:169:96,73:96:3438:73:2587:-182.204,0,-258.757	0/1:224:104,120:104:3721:120:4288:-318.668,0,-267.659	0/0:157:157,0:157:5585:0:0:0,-47.2617,-502.773	0/0:217:217,0:217:7756:0:0:0,-65.3235,-698.071	0/0:158:157,1:157:5607:1:36:0,-43.9645,-501.155	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/1:270:169,101:169:6030:101:3549:-238.342,0,-461.525	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:24:20,4:20:712:4:144:-6.0889,0,-57.1819	0/1:192:105,87:105:3741:87:3084:-219.945,0,-279.092	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/0:109:109,0:109:3892:0:0:0,-32.8123,-350.472	0/1:178:100,78:100:3575:78:2788:-197.539,0,-268.369	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:298:166,132:166:5945:132:4686:-332.194,0,-445.44	0/1:247:133,114:133:4768:114:4070:-292.132,0,-354.922	0/1:78:34,44:34:1220:44:1576:-118.651,0,-86.6265	0/1:120:48,72:48:1720:72:2567:-195.156,0,-118.962	0/0:202:199,3:199:7119:3:108:0,-50.7329,-630.693	0/1:112:43,69:43:1536:69:2452:-187.216,0,-104.818	0/1:38:19,19:19:684:19:671:-49.276,0,-50.4512	0/1:108:70,38:70:2512:38:1356:-89.8259,0,-193.821	0/1:135:72,63:72:2588:63:2246:-161.763,0,-192.529	0/1:35:15,20:15:536:20:720:-54.5927,0,-38.0388	0/0:231:231,0:231:8279:0:0:0,-69.5379,-745.116	0/0:75:75,0:75:2687:0:0:0,-22.5772,-242.074	0/0:259:259,0:259:9284:0:0:0,-77.9668,-835.523	0/0:322:322,0:322:11568:0:0:0,-96.9317,-1040.98	0/1:170:84,86:84:3012:86:3038:-222.476,0,-220.136	0/0:154:153,1:153:5484:1:36:0,-42.7603,-490.087	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	0/0:220:220,0:220:7869:0:0:0,-66.2266,-708.236	0/1:207:120,87:120:4296:87:3083:-215.386,0,-324.504	0/0:259:259,0:259:9292:0:0:0,-77.9668,-836.015	0/1:155:93,62:93:3319:62:2232:-154.484,0,-252.269	0/1:107:54,53:54:1940:53:1892:-138.348,0,-142.666	0/0:121:121,0:121:4327:0:0:0,-36.4246,-389.606	0/1:196:112,84:112:4016:84:2965:-208.073,0,-302.626	0/1:41:23,18:23:824:18:636:-45.2249,0,-62.1411	0/0:128:127,1:127:4546:1:36:0,-34.9336,-405.706	0/0:102:102,0:102:3655:0:0:0,-30.7051,-329.153	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:180:108,72:108:3867:72:2539:-174.577,0,-294.039	0/1:91:28,63:28:985:63:2240:-174.468,0,-61.5678	0/0:163:162,1:162:5824:1:36:0,-45.4696,-520.669	0/0:106:106,0:106:3791:0:0:0,-31.9092,-341.388
chr05	24368044	.	A	G	349255	PASS	AB=0.500919;ABP=3.25383;AC=94;AF=0.5;AN=188;AO=16620;CIGAR=1X;DP=33179;DPB=33179;DPRA=0;EPP=36075.5;EPPR=35906.1;GTI=0;LEN=1;MEANALT=1.14894;MQM=49.1916;MQMR=37.7595;NS=94;NUMALT=1;ODDS=120.693;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=584650;QR=589654;RO=16542;RPL=6935;RPP=991.083;RPPR=35025.9;RPR=9685;RUN=1;SAF=6937;SAP=988.21;SAR=9683;SRF=104;SRP=35025.9;SRR=16438;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:133:68,65:68:2427:65:2283:-152.918,0,-160.993	0/1:566:244,322:244:8628:322:11318:-821.753,0,-530.376	0/1:457:293,164:293:10431:164:5807:-353.893,0,-731.043	0/1:957:349,608:349:12402:608:21393:-1541.14,0,-758.449	0/1:255:116,138:116:4160:138:4881:-347.287,0,-268.324	0/1:219:86,133:86:3050:133:4687:-340.575,0,-179.991	0/1:445:305,140:305:10891:140:4920:-289.028,0,-800.637	0/1:344:121,223:121:4299:223:7763:-557.845,0,-245.361	0/1:322:191,131:191:6840:131:4595:-297.796,0,-470.991	0/1:463:166,297:166:5879:297:10479:-762.856,0,-355.295	0/1:160:47,113:47:1654:113:3949:-280.688,0,-92.3392	0/1:238:129,109:129:4619:109:3842:-249.041,0,-312.251	0/1:232:127,105:127:4542:105:3681:-244.977,0,-304.019	0/1:238:138,100:138:4901:100:3534:-230.46,0,-339.036	0/1:220:134,86:134:4783:86:3064:-190.06,0,-342.759	0/1:214:60,154:60:2117:154:5402:-391.215,0,-108.471	0/1:246:102,144:102:3593:144:5070:-367.371,0,-216.615	0/1:224:97,126:97:3452:126:4466:-319.634,0,-210.841	0/1:102:39,63:39:1385:63:2224:-155.874,0,-81.3987	0/1:706:466,240:466:16622:240:8483:-513.383,0,-1206.86	0/1:511:320,191:320:11418:191:6701:-424.121,0,-805.255	0/1:341:258,83:258:9206:83:2918:-151.558,0,-678.685	0/1:354:240,114:240:8590:114:3998:-231.223,0,-626.566	0/1:533:254,279:254:9040:279:9807:-707.33,0,-595.891	0/1:282:76,205:76:2696:205:7213:-534.005,0,-136.74	0/1:1126:497,626:497:17714:626:22009:-1572.87,0,-1116.52	0/1:844:277,566:277:9871:566:19835:-1436.24,0,-565.447	0/1:136:88,48:88:3142:48:1670:-100.727,0,-222.067	0/1:991:633,357:633:22677:357:12650:-791.538,0,-1583.54	0/1:533:369,164:369:13129:164:5797:-338.529,0,-951.053	0/1:436:130,306:130:4651:306:10799:-780.633,0,-259.326	0/1:11:8,3:8:288:3:108:-6.4352,0,-21.5964	0/1:28:5,23:5:180:23:811:-60.901,0,-7.41164	0/1:17:6,11:6:216:11:396:-29.5848,0,-12.5464	0/1:21:8,13:8:288:13:449:-32.3387,0,-17.9159	0/1:24:4,20:4:144:20:712:-52.7214,0,-4.16829	0/1:687:225,462:225:8022:462:16282:-1186.24,0,-446.973	0/1:588:233,353:233:8342:353:12294:-892.025,0,-515.874	0/1:179:60,119:60:2143:119:4172:-305.539,0,-119.707	0/1:4:2,2:2:72:2:68:-4.91908,0,-5.35941	0/1:620:409,211:409:14597:211:7403:-456.375,0,-1033.55	0/1:108:40,68:40:1423:68:2388:-166.153,0,-83.8451	0/1:623:411,212:411:14626:212:7411:-446.176,0,-1051.83	0/1:225:145,80:145:5132:80:2839:-174.297,0,-371.961	0/1:245:84,161:84:2982:161:5564:-406.592,0,-178.488	0/1:409:158,251:158:5601:251:8864:-639.384,0,-337.055	0/1:440:271,168:271:9687:168:5844:-372.319,0,-682.114	0/1:660:405,255:405:14480:255:8965:-578.926,0,-1034.92	0/1:503:195,307:195:6972:307:10803:-776.163,0,-435.644	0/1:498:215,283:215:7677:283:10002:-709.959,0,-497.428	0/1:584:222,362:222:7895:362:12799:-933.255,0,-472.567	0/1:20:9,11:9:320:11:392:-26.5334,0,-20.8641	0/1:416:257,159:257:9149:159:5652:-362.929,0,-637.915	0/1:175:40,135:40:1436:135:4808:-346.285,0,-66.7882	0/1:27:15,12:15:540:12:432:-27.895,0,-36.5892	0/1:447:260,187:260:9271:187:6525:-419.324,0,-646.795	0/1:241:93,148:93:3313:148:5178:-364.365,0,-206.932	0/1:16:13,3:13:464:3:104:-4.39374,0,-35.4804	0/1:52:34,18:34:1220:18:635:-41.3455,0,-86.5008	0/1:326:114,212:114:4070:212:7435:-534.206,0,-239.408	0/1:294:165,129:165:5894:129:4572:-296.024,0,-415.224	0/1:22:16,6:16:576:6:216:-12.0386,0,-43.0431	0/1:733:501,232:501:17931:232:8133:-486.286,0,-1274.64	0/1:711:485,226:485:17258:226:7984:-475.001,0,-1256.89	0/1:321:213,108:213:7589:108:3801:-233.152,0,-545.071	0/1:350:226,124:226:8083:124:4342:-267.664,0,-585.366	0/1:623:225,398:225:8008:398:14003:-1012.52,0,-488.074	0/1:304:230,74:230:8242:74:2596:-121.338,0,-614.386	0/1:88:34,54:34:1211:54:1910:-132.747,0,-75.7929	0/1:285:185,100:185:6580:100:3545:-219.426,0,-459.417	0/1:260:181,78:181:6462:78:2753:-156.518,0,-460.535	0/1:68:36,32:36:1277:32:1144:-73.3193,0,-89.5252	0/1:324:107,217:107:3811:217:7623:-549.971,0,-209.433	0/1:210:73,137:73:2607:137:4812:-351.36,0,-151.254	0/1:620:188,431:188:6679:431:15193:-1106.68,0,-364.996	0/1:818:365,453:365:13020:453:15957:-1130.58,0,-852.277	0/1:308:174,134:174:6198:134:4705:-316.324,0,-425.299	0/1:510:231,278:231:8244:278:9785:-699.273,0,-513.249	0/1:22:17,5:17:612:5:172:-8.38582,0,-44.5671	0/1:711:382,329:382:13652:329:11507:-794.656,0,-913.142	0/1:335:222,113:222:7896:113:3956:-238.942,0,-552.959	0/1:850:326,524:326:11541:524:18339:-1332.49,0,-713.811	0/1:270:160,110:160:5728:110:3875:-255.154,0,-408.643	0/1:223:124,99:124:4393:99:3503:-228.972,0,-307.588	0/1:307:131,175:131:4672:175:6102:-436.819,0,-302.405	0/1:423:273,150:273:9701:150:5316:-328.13,0,-699.603	0/1:104:77,27:77:2752:27:955:-53.0485,0,-195.854	0/1:287:95,192:95:3357:192: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chr05	24368084	.	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chr05	24368465	.	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chr05	24381124	.	C	T	137608	PASS	AB=0.494461;ABP=4.26119;AC=136;AF=0.731183;AN=186;AO=6713;CIGAR=1X;DP=9111;DPB=9111;DPRA=20.0022;EPP=14580.1;EPPR=5208.03;GTI=3;LEN=1;MEANALT=1.01099;MQM=59.85;MQMR=59.9662;NS=93;NUMALT=1;ODDS=0.803953;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237079;QR=85720;RO=2397;RPL=6713;RPP=14580.1;RPPR=5208.03;RPR=0;RUN=1;SAF=0;SAP=14580.1;SAR=6713;SRF=0;SRP=5208.03;SRR=2397;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:12,18:12:432:18:625:-47.5416,0,-30.1903	1/1:122:0,122:0:0:122:4263:-382.904,-36.7257,0	0/1:264:114,150:114:4074:150:5349:-402.071,0,-287.371	1/1:260:0,260:0:0:260:9140:-821.7,-78.2678,0	1/1:65:0,65:0:0:65:2304:-207.617,-19.567,0	1/1:44:0,44:0:0:44:1545:-139.332,-13.2453,0	0/1:190:79,111:79:2832:111:3921:-295.804,0,-197.923	1/1:94:0,94:0:0:94:3281:-295.502,-28.2968,0	0/1:78:38,40:38:1368:40:1386:-101.549,0,-99.9405	1/1:96:1,95:1:36:95:3366:-299.557,-25.3006,0	1/1:51:0,51:0:0:51:1792:-161.558,-15.3525,0	0/1:103:51,52:51:1836:52:1864:-137.033,0,-134.515	0/1:90:48,42:48:1724:42:1508:-108.922,0,-128.353	0/1:56:32,24:32:1148:24:829:-58.0617,0,-86.7722	0/1:79:49,30:49:1756:30:1068:-72.6507,0,-134.543	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:68:0,68:0:0:68:2387:-214.978,-20.47,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:193:89,104:89:3192:104:3682:-273.484,0,-229.404	0/1:159:87,72:87:3093:72:2537:-180.713,0,-230.715	0/1:194:135,59:135:4833:59:2089:-129.879,0,-376.723	0/1:78:31,47:31:1116:47:1657:-125.935,0,-77.2714	1/1:109:7,102:7:248:102:3608:-302.259,-10.1481,0	1/1:70:0,70:0:0:70:2472:-222.729,-21.0721,0	1/1:283:1,282:1:36:282:10025:-898.564,-81.5932,0	1/1:251:0,251:0:0:251:8856:-797.032,-75.5585,0	0/1:50:24,26:24:864:26:920:-68.0656,0,-63.0311	0/1:325:165,160:165:5920:160:5645:-410.311,0,-435.072	0/1:142:73,69:73:2597:69:2410:-174.277,0,-191.231	1/1:90:1,89:1:36:89:3144:-278.285,-23.4944,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.6223	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:6:0,6:0:0:6:212:-19.2317,-1.80618,0	1/1:204:0,204:0:0:204:7256:-653.093,-61.4101,0	1/1:184:0,184:0:0:184:6471:-582.322,-55.3895,0	1/1:60:0,60:0:0:60:2156:-194.299,-18.0618,0	.:.:.:.:.:.:.:.	0/1:154:67,86:67:2396:86:3053:-228.582,0,-169.48	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:149:80,69:80:2823:69:2464:-177.156,0,-209.452	0/1:75:43,32:43:1544:32:1148:-81.0526,0,-116.676	1/1:60:0,60:0:0:60:2133:-192.236,-18.0618,0	1/1:91:0,91:0:0:91:3177:-286.116,-27.3937,0	0/1:112:54,58:54:1917:58:2049:-150.957,0,-139.09	0/1:162:68,94:68:2425:94:3305:-248.895,0,-169.737	1/1:122:0,122:0:0:122:4329:-389.788,-36.7257,0	1/1:111:0,111:0:0:111:3929:-353.805,-33.4143,0	1/1:131:0,131:0:0:131:4611:-415.156,-39.4349,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:137:73,64:73:2609:64:2264:-162.782,0,-193.815	1/1:54:0,54:0:0:54:1901:-171.366,-16.2556,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:137:66,71:66:2376:71:2532:-186.891,0,-172.856	1/1:61:0,61:0:0:61:2157:-194.386,-18.3628,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:2,5:2:68:5:172:-13.7108,0,-4.3505	1/1:44:0,44:0:0:44:1526:-137.437,-13.2453,0	0/1:129:72,57:72:2565:57:2001:-141.443,0,-192.179	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:208:108,100:108:3869:100:3554:-257.423,0,-285.789	0/1:203:93,110:93:3336:110:3812:-282.134,0,-239.348	0/1:37:12,25:12:428:25:885:-68.8284,0,-27.7207	0/1:104:47,57:47:1665:57:2044:-152.925,0,-118.828	1/1:153:1,152:1:21:152:5349:-479.445,-43.9576,0	0/1:80:51,29:51:1813:29:1025:-68.4783,0,-139.367	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/1:79:31,48:31:1112:48:1685:-128.153,0,-76.61	0/1:97:45,52:45:1612:52:1852:-137.76,0,-116.17	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:130:0,130:0:0:130:4575:-411.904,-39.1339,0	1/1:73:0,73:0:0:73:2566:-231.188,-21.9752,0	1/1:111:0,111:0:0:111:3852:-346.578,-33.4143,0	1/1:175:0,175:0:0:175:6185:-556.756,-52.6803,0	0/1:85:38,47:38:1356:47:1656:-123.74,0,-96.7529	1/1:102:1,101:1:21:101:3612:-323.178,-28.6051,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:87:0,87:0:0:87:3042:-274.011,-26.1896,0	0/1:150:87,63:87:3128:63:2240:-156.71,0,-236.591	1/1:232:1,231:1:36:231:8103:-725.069,-66.2407,0	0/1:93:57,36:57:2032:36:1266:-86.2,0,-155.157	0/1:67:46,21:46:1648:21:752:-47.8372,0,-128.427	1/1:83:0,83:0:0:83:2906:-261.643,-24.9855,0	0/1:138:74,64:74:2652:64:2256:-161.585,0,-197.356	0/1:51:27,24:27:972:24:856:-61.9727,0,-72.4454	1/1:75:0,75:0:0:75:2665:-240.095,-22.5773,0	1/1:63:0,63:0:0:63:2241:-201.934,-18.9649,0	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	0/1:78:27,51:27:968:51:1786:-137.409,0,-63.957	0/1:66:45,21:45:1611:21:752:-48.1383,0,-125.411	1/1:100:0,100:0:0:100:3502:-315.37,-30.103,0	1/1:99:2,97:2:72:97:3453:-304.146,-22.9652,0
chr05	24381130	.	CACA	CACG,AACG	192752	PASS	AB=0.49188,0.504915;ABP=5.69031,3.9921;AC=136,50;AF=0.731183,0.268817;AN=186;AO=6627,2385;CIGAR=3M1X,1X2M1X;DP=9049;DPB=9050.5;DPRA=19.8659,1.19167;EPP=14393.4,5181.97;EPPR=13.8677;GTI=2;LEN=1,4;MEANALT=1.91209,2.32727;MQM=59.8568,59.9585;MQMR=60;NS=93;NUMALT=2;ODDS=0.697479;PAIRED=0,0;PAIREDR=0;PAO=0,6;PQA=0,144;PQR=0;PRO=0;QA=237445,84084;QR=180;RO=5;RPL=6627,2385;RPP=14393.4,5181.97;RPPR=13.8677;RPR=0,0;RUN=1,1;SAF=0,0;SAP=14393.4,5181.97;SAR=6627,2385;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:29:0,19,10:0:0:19,10:680,358:-85.0044,-29.5526,-23.8331,-55.8096,0,-52.7993	1/1:126:0,126,0:0:0:126,0:4524,0:-406.373,-37.9298,0,-406.373,-37.9298,-406.373	1/2:267:1,151,115:1:36:151,115:5400,4046:-766.436,-326.416,-283.898,-437.378,0,-405.697	1/1:260:1,258,0:1:36:258,0:9244,0:-828.07,-74.6707,0,-828.371,-77.6657,-831.308	1/1:65:0,65,0:0:0:65,0:2328,0:-209.775,-19.567,0,-209.775,-19.567,-209.775	1/1:43:0,43,0:0:0:43,0:1525,0:-137.533,-12.9443,0,-137.533,-12.9443,-137.533	1/2:186:0,107,77:0:0:107,77:3848,2732:-536.501,-222.639,-190.428,-313.912,0,-290.733	1/1:89:0,89,0:0:0:89,0:3184,0:-286.782,-26.7917,0,-286.782,-26.7917,-286.782	1/2:81:0,42,39:0:0:42,39:1492,1340:-230.724,-109.153,-96.5098,-121.92,0,-110.18	1/1:94:0,93,1:0:0:93,1:3340,36:-300.457,-27.9958,0,-297.519,-24.6985,-297.218	1/1:51:0,50,0:0:0:50,0:1788,0:-160.989,-15.0515,0,-160.989,-15.0515,-160.989	1/2:102:0,51,51:0:0:51,51:1828,1781:-294.312,-145.217,-129.864,-149.448,0,-134.096	1/2:86:0,39,47:0:0:39,47:1392,1684:-251.181,-137.699,-125.959,-113.839,0,-99.6904	1/2:57:0,25,32:0:0:25,32:900,1136:-166.223,-92.9153,-85.3896,-73.6653,0,-64.0323	1/2:80:0,30,50:0:0:30,50:1072,1773:-232.205,-144.8,-135.769,-87.7616,0,-72.7101	1/1:45:0,45,0:0:0:45,0:1616,0:-145.73,-13.5464,0,-145.73,-13.5464,-145.73	1/1:69:0,68,0:0:0:68,0:2440,0:-219.389,-20.47,0,-219.389,-20.47,-219.389	1/1:63:0,63,0:0:0:63,0:2256,0:-203.303,-18.9649,0,-203.303,-18.9649,-203.303	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:195:0,105,90:0:0:105,90:3772,3194:-568.303,-260.592,-228.984,-308.067,0,-280.975	1/2:165:0,75,89:0:0:75,89:2687,3127:-473.632,-254.498,-231.921,-219.139,0,-192.347	1/2:193:0,59,134:0:0:59,134:2116,4733:-558.384,-385.793,-368.032,-172.948,0,-132.61	1/2:82:0,51,31:0:0:51,31:1828,1094:-238.347,-89.2474,-73.8948,-149.261,0,-139.929	1/1:114:0,106,6:0:0:106,6:3800,204:-341.857,-31.9092,0,-325.312,-15.3295,-323.506	1/1:71:0,70,1:0:0:70,1:2501,36:-224.976,-21.0721,0,-222.039,-17.7749,-221.738	1/1:277:0,275,1:0:0:275,1:9840,36:-885.181,-82.7833,0,-882.244,-79.8458,-881.943	1/1:247:0,247,0:0:0:247,0:8848,0:-796.303,-74.3544,0,-796.303,-74.3544,-796.303	1/2:48:0,25,23:0:0:25,23:880,820:-138.837,-67.1991,-59.6734,-71.992,0,-65.0683	1/2:321:0,159,161:0:0:159,161:5708,5708:-930.342,-465.097,-417.233,-465.322,0,-416.856	1/2:137:0,65,72:0:0:65,72:2336,2525:-395.631,-205.83,-186.263,-190.155,0,-168.481	1/1:96:0,96,0:0:0:96,0:3437,0:-308.063,-28.8989,0,-308.063,-28.8989,-308.063	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/2:14:0,12,2:0:0:12,2:432,72:-41.4837,-6.23466,-2.6223,-35.6088,0,-35.0068	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:191:0,189,0:0:0:189,0:6765,0:-608.6,-56.8947,0,-608.6,-56.8947,-608.6	1/1:182:0,182,0:0:0:182,0:6520,0:-586.386,-54.7875,0,-586.386,-54.7875,-586.386	1/1:60:0,60,0:0:0:60,0:2152,0:-193.939,-18.0618,0,-193.939,-18.0618,-193.939	.:.:.:.:.:.:.:.	1/2:152:0,85,67:0:0:85,67:3048,2369:-441.904,-193.298,-167.711,-248.962,0,-228.793	1/1:23:0,23,0:0:0:23,0:820,0:-74.1225,-6.92369,0,-74.1225,-6.92369,-74.1225	1/2:147:0,70,76:0:0:70,76:2516,2677:-423.21,-217.951,-196.879,-205.268,0,-182.389	1/2:69:0,31,38:0:0:31,38:1116,1357:-201.868,-110.803,-101.471,-91.2289,0,-79.7898	1/1:59:0,58,0:0:0:58,0:2080,0:-187.11,-17.4597,0,-187.11,-17.4597,-187.11	1/1:93:0,92,0:0:0:92,0:3300,0:-296.729,-27.6948,0,-296.729,-27.6948,-296.729	1/2:113:0,57,56:0:0:57,56:2040,1964:-326.527,-160.176,-143.017,-166.705,0,-149.847	1/2:161:0,90,71:0:0:90,71:3217,2486:-464.92,-202.618,-175.525,-262.656,0,-241.283	1/1:120:0,120,0:0:0:120,0:4277,0:-385.108,-36.1236,0,-385.108,-36.1236,-385.108	1/1:111:0,110,0:0:0:110,0:3960,0:-356.229,-33.1133,0,-356.229,-33.1133,-356.229	1/1:135:0,134,0:0:0:134,0:4816,0:-433.252,-40.338,0,-433.252,-40.338,-433.252	1/2:6:0,1,5:0:0:1,5:36,180:-17.9843,-15.0469,-14.7459,-3.29724,0,-1.79209	1/2:135:0,61,73:0:0:61,73:2180,2571:-387.144,-209.395,-191.032,-177.832,0,-155.857	1/1:53:0,53,0:0:0:53,0:1904,0:-171.637,-15.9546,0,-171.637,-15.9546,-171.637	2/2:9:0,0,9:0:0:0,9:0,313:-28.5051,-28.5051,-28.5051,-2.70927,-2.70927,0	1/2:137:0,69,68:0:0:69,68:2472,2403:-397.663,-196.056,-175.285,-201.963,0,-181.493	1/1:61:0,61,0:0:0:61,0:2188,0:-197.181,-18.3628,0,-197.181,-18.3628,-197.181	2/2:1:0,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chr05	24384783	.	AGTC	GGTT,GGTC	75759.9	PASS	AB=0.452381,0.543779;ABP=28.6544,24.685;AC=126,60;AF=0.677419,0.322581;AN=186;AO=1788,1786;CIGAR=1X2M1X,1X3M;DP=3586;DPB=3588.25;DPRA=0.324709,1.69829;EPP=3885.6,3881.26;EPPR=11.6962;GTI=10;LEN=4,1;MEANALT=1.61798,2.01818;MQM=59.9094,59.9989;MQMR=60;NS=93;NUMALT=2;ODDS=7999.45;PAIRED=0,0;PAIREDR=0;PAO=9,0;PQA=216,0;PQR=0;PRO=0;QA=62693,63624;QR=144;RO=4;RPL=0,0;RPP=3885.6,3881.26;RPPR=11.6962;RPR=1788,1786;RUN=1,1;SAF=1788,1786;SAP=3885.6,3881.26;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:76:0,76,0:0:0:76,0:2668,0:-240.361,-22.8783,0,-240.361,-22.8783,-240.361	1/2:35:0,12,23:0:0:12,23:410,820:-100.467,-67.1988,-63.5865,-33.6148,0,-26.6911	1/1:38:0,38,0:0:0:38,0:1332,0:-119.991,-11.4391,0,-119.991,-11.4391,-119.991	1/2:9:0,8,1:0:0:8,1:274,36:-25.5215,-3.29724,-0.889005,-22.5822,0,-22.2811	1/1:12:0,12,0:0:0:12,0:418,0:-37.9518,-3.61236,0,-37.9518,-3.61236,-37.9518	1/2:16:0,9,7:0:0:9,7:323,252:-47.2682,-20.9217,-18.2125,-26.7058,0,-24.5986	1/1:48:0,48,0:0:0:48,0:1690,0:-152.385,-14.4494,0,-152.385,-14.4494,-152.385	1/2:41:0,17,24:0:0:17,24:599,860:-119.227,-70.4971,-65.3796,-49.0845,0,-41.8598	1/1:19:0,19,0:0:0:19,0:673,0:-60.8972,-5.71957,0,-60.8972,-5.71957,-60.8972	1/1:23:0,23,0:0:0:23,0:814,0:-73.581,-6.92369,0,-73.581,-6.92369,-73.581	1/2:19:0,12,7:0:0:12,7:413,252:-54.4536,-20.9217,-17.3094,-33.8858,0,-31.7786	1/2:18:0,11,7:0:0:11,7:387,248:-52.0547,-20.557,-17.2457,-31.8509,0,-29.7436	1/2:21:0,11,10:0:0:11,10:383,356:-60.5112,-29.3709,-26.0596,-31.4924,0,-28.4821	1/2:13:0,3,10:0:0:3,10:108,356:-38.1841,-29.3709,-28.4679,-9.17208,0,-6.16178	1/1:20:0,20,0:0:0:20,0:703,0:-63.5923,-6.0206,0,-63.5923,-6.0206,-63.5923	1/1:23:0,23,0:0:0:23,0:793,0:-71.6834,-6.92369,0,-71.6834,-6.92369,-71.6834	1/1:12:0,12,0:0:0:12,0:429,0:-38.59,-3.61236,0,-38.59,-3.61236,-38.59	1/1:5:0,5,0:0:0:5,0:168,0:-15.4499,-1.50515,0,-15.4499,-1.50515,-15.4499	1/2:29:0,20,9:0:0:20,9:692,324:-83.0202,-26.7966,-20.776,-56.5791,0,-53.8699	1/2:82:0,31,51:0:0:31,51:1081,1813:-236.01,-148.097,-138.765,-88.2646,0,-72.9121	1/2:19:0,5,14:0:0:5,14:179,489:-54.7242,-40.1245,-38.6193,-14.9552,0,-10.7408	1/2:16:2,10,4:2:72:10,4:343,129:-31.7482,-4.48888,-7.3659,-21.955,0,-26.6285	1/1:30:0,29,1:0:0:29,1:1033,36:-92.9235,-8.72987,0,-89.9859,-5.43263,-89.6849	1/1:9:0,9,0:0:0:9,0:315,0:-28.6879,-2.70927,0,-28.6879,-2.70927,-28.6879	1/1:73:0,73,0:0:0:73,0:2581,0:-232.54,-21.9752,0,-232.54,-21.9752,-232.54	1/1:45:0,45,0:0:0:45,0:1596,0:-143.929,-13.5464,0,-143.929,-13.5464,-143.929	1/2:7:0,4,3:0:0:4,3:138,108:-20.3744,-9.17208,-7.96796,-11.5557,0,-10.6526	1/2:63:0,32,31:0:0:32,31:1123,1093:-180.737,-89.3454,-79.7124,-91.7435,0,-82.4116	1/2:87:0,50,37:0:0:50,37:1753,1309:-249.62,-106.971,-91.9199,-143.001,0,-131.862	1/1:45:0,45,0:0:0:45,0:1568,0:-141.406,-13.5464,0,-141.406,-13.5464,-141.406	2/2:85:0,0,84:0:0:0,84:0,2982:-268.25,-268.25,-268.25,-25.2865,-25.2865,0	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:1:0,1,0:0:0:1,0:25,0:-2.27323,-0.30103,0,-2.27323,-0.30103,-2.27323	.:.:.:.:.:.:.:.	1/1:60:0,60,0:0:0:60,0:2071,0:-186.657,-18.0618,0,-186.657,-18.0618,-186.657	1/1:48:0,46,2:0:0:46,2:1590,72:-143.025,-13.8474,0,-137.15,-7.61272,-136.548	1/1:20:0,19,1:0:0:19,1:684,36:-61.5287,-5.71957,0,-58.5913,-2.42233,-58.2902	2/2:62:0,0,62:0:0:0,62:0,2228:-200.784,-200.784,-200.784,-18.6639,-18.6639,0	1/2:27:0,17,10:0:0:17,10:582,360:-76.9643,-29.734,-24.6165,-47.5836,0,-44.5733	1/1:14:0,14,0:0:0:14,0:490,0:-44.4303,-4.21442,0,-44.4303,-4.21442,-44.4303	1/2:22:0,14,8:0:0:14,8:485,284:-62.9071,-23.4951,-19.2807,-39.7637,0,-37.3555	1/2:23:0,15,8:0:0:15,8:524,284:-66.1158,-23.4951,-18.9797,-42.9736,0,-40.5653	1/1:23:0,22,1:0:0:22,1:775,36:-69.7115,-6.62266,0,-66.7738,-3.32542,-66.4727	1/1:21:0,21,0:0:0:21,0:721,0:-65.2062,-6.32163,0,-65.2062,-6.32163,-65.2062	1/2:16:0,7,9:0:0:7,9:249,324:-47.0875,-26.7966,-24.6894,-20.6484,0,-17.9391	1/2:52:0,23,29:0:0:23,29:820,991:-147.612,-80.7631,-73.8394,-67.1987,0,-58.4688	1/1:26:0,26,0:0:0:26,0:910,0:-82.2145,-7.82678,0,-82.2145,-7.82678,-82.2145	1/1:40:0,40,0:0:0:40,0:1393,0:-125.663,-12.0412,0,-125.663,-12.0412,-125.663	1/1:33:0,33,0:0:0:33,0:1161,0:-104.796,-9.93399,0,-104.796,-9.93399,-104.796	2/2:151:0,0,150:0:0:0,150:0,5335:-479.922,-479.922,-479.922,-45.1545,-45.1545,0	1/2:38:0,26,12:0:0:26,12:932,432:-111.622,-35.6088,-27.7821,-76.3724,0,-72.76	1/1:24:0,24,0:0:0:24,0:813,0:-73.4778,-7.22472,0,-73.4778,-7.22472,-73.4778	2/2:146:0,1,144:0:0:1,144:36,5137:-462.152,-459.214,-458.913,-43.3483,-40.371,0	1/2:16:0,10,6:0:0:10,6:357,212:-46.726,-17.6186,-14.6083,-29.4619,0,-27.6557	1/1:4:0,4,0:0:0:4,0:139,0:-12.8524,-1.20412,0,-12.8524,-1.20412,-12.8524	2/2:124:0,2,122:0:0:2,122:72,4353:-391.585,-385.71,-385.108,-36.7257,-30.491,0	2/2:132:0,6,126:0:0:6,126:216,4460:-401.208,-383.584,-381.777,-37.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chr05	24384823	.	G	A	36419.4	PASS	AB=0.45798;ABP=22.9018;AC=126;AF=0.677419;AN=186;AO=1809;CIGAR=1X;DP=3582;DPB=3582;DPRA=0.326855;EPP=3931.2;EPPR=3844.35;GTI=11;LEN=1;MEANALT=1;MQM=59.8856;MQMR=59.9989;NS=93;NUMALT=1;ODDS=0.188978;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64715;QR=63028;RO=1773;RPL=1809;RPP=3931.2;RPPR=3844.35;RPR=0;RUN=1;SAF=1809;SAP=3931.2;SAR=0;SRF=1773;SRP=3853.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:77:0,77:0:0:77:2764:-248.994,-23.1793,0	0/1:35:23,12:23:815:12:432:-28.6851,0,-63.1347	1/1:39:0,39:0:0:39:1402:-126.479,-11.7402,0	0/1:10:1,9:1:36:9:315:-25.677,0,-0.587975	1/1:13:0,13:0:0:13:468:-42.4302,-3.91339,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:49:0,49:0:0:49:1740:-156.879,-14.7505,0	0/1:42:24,18:24:846:18:648:-45.9627,0,-63.8145	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:19:7,12:7:252:12:432:-33.5007,0,-17.3094	0/1:17:6,11:6:216:11:396:-30.861,0,-14.673	0/1:21:10,11:10:348:11:392:-29.2984,0,-25.3335	0/1:12:9,3:9:315:3:108:-6.46281,0,-25.0749	1/1:20:0,20:0:0:20:708:-64.041,-6.0206,0	1/1:22:0,22:0:0:22:776:-70.1609,-6.62266,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:29:9,20:9:324:20:712:-55.6768,0,-20.776	0/1:84:52,32:52:1868:32:1152:-78.7036,0,-143.113	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/1:15:6,9:6:212:9:324:-24.9904,0,-14.9093	1/1:30:1,29:1:36:29:1030:-89.414,-5.43263,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:76:0,76:0:0:76:2713:-244.412,-22.8783,0	1/1:45:0,45:0:0:45:1601:-144.378,-13.5464,0	0/1:7:3,4:3:95:4:144:-11.2064,0,-6.757	0/1:61:30,31:30:1067:31:1112:-82.0285,0,-77.9775	0/1:87:38,49:38:1352:49:1760:-132.494,0,-95.7908	1/1:44:0,44:0:0:44:1580:-142.485,-13.2453,0	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.665	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:20:1,19:1:36:19:684:-58.2902,-2.42233,0	0/0:63:63,0:63:2232:0:0:0,-18.9649,-201.142	0/1:28:11,17:11:392:17:603:-46.1707,0,-27.1912	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:22:8,14:8:288:14:500:-38.7126,0,-19.6447	0/1:23:8,15:8:271:15:540:-42.0128,0,-17.7957	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:17:9,8:9:324:8:288:-21.1045,0,-24.3883	0/1:50:28,22:28:1004:22:783:-55.7421,0,-75.6244	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/0:148:148,0:148:5291:0:0:0,-44.5524,-476.325	0/1:38:12,26:12:424:26:936:-73.1203,0,-27.0573	1/1:24:0,24:0:0:24:856:-77.354,-7.22472,0	0/0:141:140,1:140:4975:1:36:0,-38.847,-444.304	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/0:121:119,2:119:4251:2:72:0,-29.5879,-375.933	0/0:135:129,6:129:4580:6:216:0,-20.8485,-392.576	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:35:15,20:15:540:20:720:-54.5927,0,-38.4005	0/0:114:113,1:113:4021:1:36:0,-30.7191,-358.481	0/1:18:4,14:4:140:14:504:-40.2344,0,-7.52604	0/1:52:32,20:32:1140:20:716:-49.1142,0,-87.2556	0/1:44:32,12:32:1135:12:432:-25.9759,0,-89.2127	0/1:16:9,7:9:316:7:252:-18.2125,0,-23.9624	1/1:37:1,36:1:36:36:1292:-112.985,-7.53984,0	0/1:42:33,9:33:1148:9:324:-16.8626,0,-90.9798	0/0:34:33,1:33:1141:1:36:0,-6.63674,-99.3948	0/1:30:17,13:17:612:13:456:-32.3414,0,-46.3825	0/1:39:19,20:19:676:20:716:-53.0275,0,-49.4278	0/0:103:100,3:100:3542:3:108:0,-20.9309,-308.913	1/1:38:0,38:0:0:38:1360:-122.698,-11.4391,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:69:0,69:0:0:69:2476:-223.087,-20.7711,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:42:19,23:19:684:23:820:-61.4793,0,-49.2471	1/1:19:0,19:0:0:19:676:-61.0962,-5.71957,0	0/0:140:140,0:140:4943:0:0:0,-42.1442,-445.022	1/1:20:0,20:0:0:20:705:-63.7728,-6.0206,0	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	0/1:52:20,32:20:716:32:1140:-87.2556,0,-49.1142	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:46:17,29:17:604:29:1035:-79.4846,0,-40.8432	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:149:132,17:132:4697:17:604:-9.83714,0,-378.038	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0
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chr05	24474836	.	G	A	44777.9	PASS	AB=0.501567;ABP=3.11921;AC=47;AF=0.252688;AN=186;AO=2574;CIGAR=1X;DP=11169;DPB=11169;DPRA=1.04491;EPP=5351.82;EPPR=17937.3;GTI=2;LEN=1;MEANALT=1.09434;MQM=59.9646;MQMR=59.9911;NS=93;NUMALT=1;ODDS=0.134419;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91709;QR=301378;RO=8580;RPL=37;RPP=5275.62;RPPR=17826.7;RPR=2537;RUN=1;SAF=9;SAP=5514.48;SAR=2565;SRF=13;SRP=18521.5;SRR=8567;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:18,27:18:644:27:938:-71.1839,0,-44.7361	0/0:198:197,0:197:6951:0:0:0,-59.3029,-625.306	0/1:158:80,78:80:2790:78:2750:-200.177,0,-203.778	0/0:230:230,0:230:8148:0:0:0,-69.2369,-733.345	0/0:61:60,0:60:2118:0:0:0,-18.0618,-190.528	0/0:39:39,0:39:1374:0:0:0,-11.7402,-123.957	0/1:158:87,71:87:3032:71:2525:-179.938,0,-225.551	0/0:223:219,3:219:7732:3:108:0,-57.1133,-685.848	0/1:136:41,95:41:1408:95:3390:-264.375,0,-86.0699	0/0:134:134,0:134:4732:0:0:0,-40.338,-426.043	0/0:68:68,0:68:2395:0:0:0,-20.47,-215.808	0/0:110:110,0:110:3771:0:0:0,-33.1133,-339.592	0/1:65:31,34:31:1112:34:1224:-90.9001,0,-80.8244	0/1:81:35,46:35:1237:46:1627:-122.334,0,-87.2489	0/1:95:43,52:43:1528:52:1862:-139.262,0,-109.215	0/0:71:71,0:71:2405:0:0:0,-21.3731,-216.7	0/0:86:86,0:86:2946:0:0:0,-25.8886,-264.741	0/0:77:77,0:77:2672:0:0:0,-23.1793,-240.722	0/0:63:63,0:63:2220:0:0:0,-18.9649,-200.063	0/1:227:116,111:116:4078:111:3984:-290.413,0,-298.876	0/1:187:103,84:103:3655:84:2994:-213.4,0,-272.864	0/1:78:30,48:30:1050:48:1709:-130.613,0,-71.3284	0/1:100:44,56:44:1560:56:2005:-150.619,0,-110.589	0/0:114:111,3:111:3890:3:108:0,-24.2422,-340.223	0/0:70:70,0:70:2481:0:0:0,-21.0721,-223.542	0/0:396:395,0:395:13921:0:0:0,-118.907,-1252.33	0/0:301:300,0:300:10532:0:0:0,-90.309,-947.462	0/1:57:22,35:22:784:35:1251:-95.7356,0,-53.7252	0/1:328:167,161:167:5849:161:5749:-418.788,0,-427.796	0/1:176:94,81:94:3339:81:2885:-206.846,0,-247.686	0/0:191:191,0:191:6680:0:0:0,-57.4967,-601.288	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:17:17,0:17:590:0:0:0,-5.11751,-53.4242	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:236:236,0:236:8300:0:0:0,-71.0431,-747.022	0/0:228:224,0:224:7913:0:0:0,-67.4307,-711.846	0/0:66:66,0:66:2296:0:0:0,-19.868,-206.898	.:.:.:.:.:.:.:.	0/1:133:72,61:72:2529:61:2146:-153.369,0,-187.825	0/0:24:24,0:24:818:0:0:0,-7.22472,-73.9302	0/1:125:71,54:71:2506:54:1927:-136.077,0,-188.164	0/1:102:48,54:48:1654:54:1918:-142.19,0,-118.441	0/0:87:87,0:87:2977:0:0:0,-26.1896,-268.16	0/0:94:93,0:93:3286:0:0:0,-27.9958,-295.112	0/1:129:60,69:60:2122:69:2442:-181.197,0,-152.415	0/1:181:101,80:101:3551:80:2859:-203.042,0,-265.314	0/0:150:150,0:150:5287:0:0:0,-45.1545,-475.972	0/0:264:264,0:264:9338:0:0:0,-79.4719,-840.398	0/0:214:212,1:212:7475:1:36:0,-60.8834,-669.207	0/1:14:6,8:6:207:8:284:-21.6889,0,-14.7525	0/1:144:64,80:64:2252:80:2865:-214.738,0,-159.593	0/0:60:60,0:60:2118:0:0:0,-18.0618,-190.888	0/1:22:15,7:15:527:7:248:-16.0415,0,-41.1375	0/1:183:101,82:101:3535:82:2904:-206.495,0,-263.272	0/0:40:40,0:40:1398:0:0:0,-12.0412,-126.116	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:22:12,10:12:424:10:352:-25.395,0,-31.8738	0/0:74:74,0:74:2627:0:0:0,-22.2762,-236.678	0/1:121:62,59:62:2190:59:2116:-154.282,0,-160.94	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:329:176,153:176:6204:153:5443:-390.96,0,-459.425	0/1:280:123,157:123:4333:157:5558:-416.054,0,-305.858	0/1:102:59,43:59:2094:43:1531:-107.376,0,-158.024	0/1:103:64,39:64:2235:39:1361:-91.7783,0,-170.406	0/0:235:233,1:233:8189:1:36:0,-67.2026,-733.437	0/1:119:32,87:32:1132:87:3107:-244.034,0,-66.366	0/1:25:16,9:16:564:9:313:-20.9793,0,-43.5646	0/1:75:49,26:49:1726:26:936:-61.9822,0,-133.046	0/1:88:47,41:47:1655:41:1476:-106.646,0,-122.744	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:59:59,0:59:2060:0:0:0,-17.7608,-185.67	0/0:83:83,0:83:2933:0:0:0,-24.9855,-264.205	0/0:199:199,0:199:7032:0:0:0,-59.905,-632.949	0/0:221:220,0:220:7738:0:0:0,-66.2266,-696.228	0/1:152:74,78:74:2613:78:2777:-204.414,0,-189.661	0/0:186:186,0:186:6591:0:0:0,-55.9916,-593.279	0/1:32:22,10:22:780:10:360:-23.1113,0,-60.8901	0/0:176:173,2:173:6105:2:72:0,-46.2034,-542.724	0/1:126:68,58:68:2412:58:2065:-148.161,0,-179.408	0/0:328:326,2:326:11481:2:72:0,-91.9011,-1026.35	0/1:90:43,47:43:1484:47:1676:-124.033,0,-106.755	0/1:90:44,46:44:1499:46:1652:-121.876,0,-108.103	0/0:122:122,0:122:4188:0:0:0,-36.7257,-377.105	0/1:172:83,89:83:2935:89:3196:-236.085,0,-212.609	0/1:69:31,38:31:1064:38:1360:-101.93,0,-75.2933	0/0:73:73,0:73:2512:0:0:0,-21.9752,-226.329	0/0:90:89,1:89:3093:1:36:0,-23.4944,-274.999	0/0:54:54,0:54:1860:0:0:0,-16.2556,-167.675	0/1:74:40,34:40:1399:34:1220:-87.8306,0,-103.927	0/1:85:35,50:35:1234:50:1788:-135.615,0,-85.7751	0/0:125:125,0:125:4371:0:0:0,-37.6287,-393.569	0/0:115:115,0:115:3976:0:0:0,-34.6184,-358.034
chr05	24474991	.	C	T	33985.9	PASS	AB=0.542035;ABP=58.5078;AC=47;AF=0.252688;AN=186;AO=1974;CIGAR=1X;DP=7934;DPB=7934;DPRA=0.911644;EPP=4289.5;EPPR=12923.3;GTI=1;LEN=1;MEANALT=1;MQM=59.9645;MQMR=59.98;NS=93;NUMALT=1;ODDS=2.12629;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70622;QR=211648;RO=5958;RPL=1;RPP=4280.82;RPPR=12914.6;RPR=1973;RUN=1;SAF=1;SAP=4280.82;SAR=1973;SRF=1;SRP=12932;SRR=5957;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:16,21:16:576:21:748:-56.5066,0,-41.0369	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.809	0/1:58:33,25:33:1163:25:896:-63.5006,0,-87.5164	0/0:123:123,0:123:4399:0:0:0,-37.0267,-396.083	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/1:143:63,80:63:2215:80:2856:-214.23,0,-156.565	0/0:132:132,0:132:4728:0:0:0,-39.736,-425.679	0/1:99:52,47:52:1864:47:1684:-122.043,0,-138.237	0/0:141:141,0:141:5011:0:0:0,-42.4452,-451.135	0/0:72:72,0:72:2551:0:0:0,-21.6742,-229.841	0/0:88:88,0:88:3103:0:0:0,-26.4906,-279.5	0/1:80:41,39:41:1468:39:1394:-101.672,0,-108.334	0/1:157:82,75:82:2855:75:2675:-193.733,0,-209.925	0/1:78:34,44:34:1208:44:1580:-119.009,0,-85.5457	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.747	0/0:89:89,0:89:3167:0:0:0,-26.7917,-285.255	0/0:85:85,0:85:3016:0:0:0,-25.5875,-271.67	0/0:36:36,0:36:1276:0:0:0,-10.8371,-114.514	0/1:70:30,40:30:1061:40:1423:-107.294,0,-74.7273	0/1:87:43,44:43:1540:44:1572:-115.581,0,-112.703	0/1:111:27,84:27:953:84:3016:-238.256,0,-52.669	0/1:64:22,42:22:788:42:1489:-115.037,0,-51.9789	0/0:113:104,9:104:3698:9:324:0,-4.51053,-303.515	0/0:33:32,0:32:1115:0:0:0,-9.63296,-100.294	0/0:262:262,0:262:9352:0:0:0,-78.8699,-841.419	0/0:134:134,0:134:4788:0:0:0,-40.338,-431.078	0/1:24:13,11:13:460:11:384:-27.67,0,-34.5107	0/1:132:65,67:65:2324:67:2408:-177.24,0,-169.684	0/1:157:68,89:68:2414:89:3192:-240.233,0,-170.254	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.101	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:233:232,0:232:8215:0:0:0,-69.839,-739.012	0/0:170:170,0:170:6060:0:0:0,-51.1751,-545.503	0/0:72:72,0:72:2561:0:0:0,-21.6742,-230.739	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:68:38,30:38:1360:30:1076:-76.6828,0,-102.231	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:56:31,25:31:1108:25:881:-62.7482,0,-83.1733	0/1:62:35,27:35:1248:27:968:-68.7735,0,-93.961	0/0:68:68,0:68:2411:0:0:0,-20.47,-217.247	0/0:96:96,0:96:3427:0:0:0,-28.8989,-308.644	0/1:80:41,39:41:1449:39:1396:-101.857,0,-106.622	0/1:127:41,86:41:1468:86:3092:-240.254,0,-94.1853	0/0:147:145,2:145:5153:2:72:0,-37.4147,-457.074	0/0:118:118,0:118:4206:0:0:0,-35.5215,-378.719	0/0:192:192,0:192:6844:0:0:0,-57.7978,-616.031	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:78:36,42:36:1281:42:1466:-108.751,0,-92.1109	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:9:7,2:7:244:2:72:-4.12745,0,-19.5902	0/1:81:37,44:37:1320:44:1572:-117.388,0,-94.7185	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	.:.:.:.:.:.:.:.	0/1:25:8,17:8:284:17:612:-47.8877,0,-18.3776	0/0:120:118,2:118:4198:2:72:0,-29.2869,-371.163	0/1:163:76,87:76:2682:87:3107:-230.789,0,-192.558	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/1:78:29,49:29:1044:49:1760:-135.204,0,-70.7945	0/1:219:102,117:102:3660:117:4199:-312.165,0,-263.678	0/1:74:36,38:36:1283:38:1350:-99.5231,0,-93.4964	0/1:29:7,22:7:252:22:780:-61.7932,0,-14.2991	0/0:94:94,0:94:3340:0:0:0,-28.2968,-300.817	0/1:122:36,86:36:1292:86:3073:-240.071,0,-79.8581	0/1:48:21,27:21:737:27:972:-73.3485,0,-52.2012	0/1:71:41,30:41:1464:30:1080:-76.1401,0,-110.683	0/1:128:63,65:63:2226:65:2317:-170.256,0,-161.843	0/1:37:26,11:26:905:11:396:-24.8446,0,-70.6245	0/0:118:118,0:118:4152:0:0:0,-35.5215,-373.863	0/0:88:88,0:88:3119:0:0:0,-26.4906,-280.936	0/0:222:222,0:222:7920:0:0:0,-66.8287,-712.826	0/0:87:87,0:87:3100:0:0:0,-26.1896,-279.226	0/1:110:49,61:49:1747:61:2175:-162.903,0,-124.4	0/0:86:86,0:86:3052:0:0:0,-25.8886,-274.909	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/1:46:18,28:18:640:28:1008:-77.1026,0,-44.0819	0/0:110:110,0:110:3924:0:0:0,-33.1133,-353.354	0/1:118:59,59:59:2063:59:2124:-155.907,0,-150.417	0/1:86:44,42:44:1552:42:1508:-110.126,0,-114.08	0/0:106:106,0:106:3720:0:0:0,-31.9092,-335.006	0/1:132:63,69:63:2251:69:2472:-182.998,0,-163.03	0/1:48:28,20:28:1000:20:720:-50.6711,0,-75.8659	0/0:75:75,0:75:2644:0:0:0,-22.5772,-238.209	0/0:73:73,0:73:2582:0:0:0,-21.9752,-232.629	0/0:71:71,0:71:2481:0:0:0,-21.3731,-223.544	0/1:118:54,64:54:1920:64:2289:-170.749,0,-137.556	0/1:72:26,46:26:890:46:1656:-127.654,0,-58.7341	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:103:103,0:103:3616:0:0:0,-31.0061,-325.647
chr05	24513492	.	G	A	122844	PASS	AB=0.495597;ABP=3.62218;AC=137;AF=0.744565;AN=184;AO=5882;CIGAR=1X;DP=7735;DPB=7735;DPRA=21.239;EPP=12775.6;EPPR=4026.75;GTI=1;LEN=1;MEANALT=1;MQM=59.9981;MQMR=60;NS=92;NUMALT=1;ODDS=6.56004;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208659;QR=64993;RO=1853;RPL=0;RPP=12775.6;RPPR=4026.75;RPR=5882;RUN=1;SAF=0;SAP=12775.6;SAR=5882;SRF=0;SRP=4026.75;SRR=1853;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:8,7:8:273:7:252:-18.5135,0,-20.3847	1/1:117:1,116:1:36:116:4126:-367.927,-31.6222,0	0/1:69:33,36:33:1160:36:1279:-94.6414,0,-83.9328	1/1:174:3,171:3:108:171:6075:-536.78,-42.3041,0	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:148:63,85:63:2172:85:3016:-227.118,0,-151.189	1/1:94:0,94:0:0:94:3323:-299.288,-28.2968,0	0/1:111:59,52:59:2087:52:1820:-130.663,0,-154.686	1/1:107:0,107:0:0:107:3795:-341.749,-32.2102,0	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	1/1:73:1,72:1:36:72:2565:-227.5,-18.3769,0	0/1:85:48,37:48:1661:37:1332:-94.5948,0,-124.185	0/1:84:41,43:41:1438:43:1528:-112.526,0,-104.428	0/1:85:44,41:44:1529:41:1468:-106.829,0,-112.312	1/1:61:0,61:0:0:61:2125:-191.518,-18.3628,0	1/1:75:0,75:0:0:75:2663:-239.916,-22.5773,0	1/1:57:1,56:1:36:56:1988:-175.596,-13.5604,0	1/1:58:0,58:0:0:58:2067:-186.3,-17.4597,0	0/1:180:92,88:92:3208:88:3134:-228.1,0,-234.759	0/1:133:58,75:58:2036:75:2637:-197.541,0,-143.473	0/1:93:53,40:53:1870:40:1431:-101.091,0,-140.582	0/1:53:18,35:18:623:35:1226:-94.6851,0,-40.4385	1/1:16:1,15:1:36:15:532:-44.6148,-1.21821,0	1/1:65:0,65:0:0:65:2305:-207.709,-19.567,0	1/1:239:0,239:0:0:239:8454:-760.868,-71.9462,0	1/1:131:1,130:1:36:130:4609:-411.377,-35.8367,0	0/1:54:31,23:31:1095:23:820:-57.8669,0,-82.6035	0/1:208:106,102:106:3748:102:3609:-262.404,0,-274.908	0/1:103:40,63:40:1419:63:2223:-169.327,0,-97.0006	1/1:114:0,114:0:0:114:4034:-363.249,-34.3174,0	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:223:0,223:0:0:223:7880:-709.233,-67.1297,0	1/1:154:0,154:0:0:154:5467:-492.16,-46.3586,0	1/1:76:1,75:1:36:75:2632:-233.527,-19.28,0	.:.:.:.:.:.:.:.	0/1:106:47,59:47:1650:59:2107:-157.988,0,-116.877	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	0/1:92:37,55:37:1310:55:1943:-147.448,0,-90.5053	0/1:94:47,47:47:1642:47:1640:-119.588,0,-119.77	1/1:61:1,60:1:32:60:2074:-183.729,-15.1635,0	1/1:80:0,80:0:0:80:2850:-256.737,-24.0824,0	0/1:104:48,56:48:1683:56:1985:-147.615,0,-120.449	0/1:99:54,45:54:1870:45:1573:-112.057,0,-138.771	1/1:106:0,106:0:0:106:3758:-338.42,-31.9092,0	1/1:100:1,99:1:36:99:3512:-312.692,-26.5047,0	1/1:60:0,60:0:0:60:2125:-191.517,-18.0618,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:60:38,22:38:1313:22:784:-52.8221,0,-100.405	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0812	0/1:118:72,46:72:2554:46:1601:-108.856,0,-194.589	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:10:5,5:5:180:5:167:-12.3481,0,-13.5418	0/1:19:15,4:15:536:4:144:-7.59405,0,-42.8552	1/1:45:0,45:0:0:45:1589:-143.298,-13.5464,0	0/1:120:73,47:73:2532:47:1672:-114.644,0,-192.004	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:169:82,87:82:2882:87:3088:-227.273,0,-208.742	0/1:144:80,64:80:2780:64:2304:-164.272,0,-207.093	0/1:54:26,28:26:910:28:1004:-74.4202,0,-65.9584	0/1:44:17,27:17:608:27:964:-73.8315,0,-41.8067	1/1:114:0,114:0:0:114:4033:-363.161,-34.3174,0	0/1:86:61,25:61:2180:25:896:-55.0718,0,-170.578	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:41:13,28:13:460:28:999:-77.8823,0,-29.3931	0/1:85:36,49:36:1283:49:1721:-129.584,0,-90.1851	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	1/1:124:0,124:0:0:124:4389:-395.185,-37.3277,0	1/1:92:0,92:0:0:92:3280:-295.419,-27.6948,0	1/1:150:1,149:1:36:149:5276:-471.38,-41.5562,0	1/1:149:1,148:1:32:148:5294:-473.396,-41.6542,0	0/1:53:20,33:20:703:33:1180:-90.5535,0,-47.6389	1/1:98:2,96:2:72:96:3409:-300.188,-22.6642,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:83:0,83:0:0:83:2958:-266.453,-24.9855,0	0/1:84:32,52:32:1140:52:1852:-141.673,0,-77.6227	1/1:196:0,196:0:0:196:6964:-626.83,-59.0019,0	0/1:131:64,67:64:2236:67:2392:-176.103,0,-162.068	0/1:55:30,25:30:1059:25:862:-61.3341,0,-79.0638	1/1:124:0,124:0:0:124:4413:-397.343,-37.3277,0	0/1:159:80,79:80:2797:79:2810:-205.276,0,-204.106	0/1:53:19,34:19:650:34:1195:-91.9,0,-42.8643	1/1:86:0,86:0:0:86:3064:-275.99,-25.8886,0	1/1:84:0,84:0:0:84:2995:-269.782,-25.2865,0	1/1:30:0,30:0:0:30:1063:-95.9808,-9.0309,0	0/1:90:52,38:52:1795:38:1348:-94.5276,0,-134.733	0/1:85:56,29:56:1953:29:1027:-67.1546,0,-150.457	1/1:97:1,96:1:36:96:3406:-303.157,-25.6016,0	1/1:126:0,126:0:0:126:4484:-403.729,-37.9298,0
chr05	24607698	.	G	T	104305	PASS	AB=0.501219;ABP=3.05793;AC=141;AF=0.75;AN=188;AO=5931;CIGAR=1X;DP=7791;DPB=7791;DPRA=0;EPP=12882;EPPR=4031.1;GTI=1;LEN=1;MEANALT=1.01064;MQM=34.3443;MQMR=47.503;NS=94;NUMALT=1;ODDS=2.88951;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212071;QR=66549;RO=1859;RPL=5931;RPP=12882;RPPR=4039.78;RPR=0;RUN=1;SAF=5931;SAP=12882;SAR=0;SRF=1858;SRP=4031.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:14,11:14:500:11:396:-24.9358,0,-37.5827	1/1:120:2,118:2:68:118:4210:-334.989,-29.6919,0	0/1:117:64,53:64:2270:53:1900:-114.873,0,-165.768	1/1:219:0,219:0:0:219:7820:-620.931,-65.9256,0	1/1:80:0,80:0:0:80:2872:-233.238,-24.0824,0	1/1:93:0,93:0:0:93:3316:-268.473,-27.9958,0	0/1:71:44,27:44:1576:27:952:-54.7918,0,-119.543	1/1:138:0,138:0:0:138:4952:-400.73,-41.5421,0	0/1:54:26,28:26:932:28:999:-65.3814,0,-67.1998	1/1:89:0,89:0:0:89:3189:-251.416,-26.7917,0	1/1:35:0,35:0:0:35:1248:-100.15,-10.5361,0	1/1:45:0,45:0:0:45:1616:-131.184,-13.5464,0	0/1:56:33,23:33:1173:23:824:-50.6147,0,-88.3587	0/1:69:34,35:34:1216:35:1236:-80.0565,0,-88.2511	0/1:55:33,22:33:1188:22:777:-45.056,0,-89.7463	1/1:43:1,42:1:36:42:1500:-119.138,-9.42328,0	0/1:88:36,52:36:1288:52:1852:-123.006,0,-88.5366	1/1:47:0,47:0:0:47:1692:-137.006,-14.1484,0	1/1:43:0,43:0:0:43:1524:-124.612,-12.9443,0	0/1:159:75,84:75:2687:84:3000:-190.894,0,-191.902	0/1:114:61,53:61:2177:53:1884:-119.298,0,-160.538	0/1:143:82,61:82:2948:61:2173:-130.944,0,-218.777	0/1:96:46,50:46:1648:50:1781:-113.735,0,-118.5	1/1:73:3,70:3:108:70:2516:-193.997,-11.9696,0	1/1:34:0,34:0:0:34:1208:-98.9753,-10.235,0	1/1:370:0,369:0:0:369:13229:-1047.8,-111.08,0	1/1:180:1,179:1:36:179:6403:-510.918,-50.612,0	0/1:28:10,18:10:360:18:648:-44.6959,0,-24.0597	0/1:153:70,83:70:2512:83:2976:-188.66,0,-177.641	0/1:164:81,83:81:2887:83:2910:-185.019,0,-208.372	1/1:128:0,128:0:0:128:4558:-360.479,-38.5318,0	0/1:5:3,2:3:108:2:72:-3.74362,0,-8.50047	1/1:9:0,9:0:0:9:324:-26.6185,-2.70927,0	1/1:7:0,7:0:0:7:252:-20.6634,-2.10721,0	1/1:5:0,5:0:0:5:180:-14.9323,-1.50515,0	1/1:3:0,3:0:0:3:99:-8.51997,-0.90309,0	1/1:175:0,175:0:0:175:6257:-494.067,-52.6803,0	1/1:237:0,237:0:0:237:8444:-685.241,-71.3441,0	1/1:55:0,55:0:0:55:1965:-159.397,-16.5567,0	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	0/1:140:69,71:69:2476:71:2544:-164.699,0,-179.145	1/1:20:0,20:0:0:20:720:-57.5693,-6.0206,0	0/1:101:49,52:49:1760:52:1863:-120.544,0,-127.01	0/1:68:33,35:33:1180:35:1256:-80.1312,0,-85.174	1/1:53:0,53:0:0:53:1892:-152.037,-15.9546,0	1/1:60:0,60:0:0:60:2156:-171.471,-18.0618,0	0/1:99:50,49:50:1800:49:1760:-114.172,0,-131.624	0/1:205:95,110:95:3416:110:3960:-252.506,0,-242.334	1/1:88:0,88:0:0:88:3156:-251.699,-26.4906,0	1/1:150:0,150:0:0:150:5373:-427.026,-45.1545,0	1/1:60:0,60:0:0:60:2126:-169.639,-18.0618,0	0/1:10:6,4:6:216:4:144:-6.83921,0,-16.6356	0/1:127:57,70:57:2048:70:2501:-163.332,0,-144.706	1/1:14:0,14:0:0:14:503:-39.5678,-4.21442,0	0/1:7:5,2:5:180:2:72:-3.14156,0,-14.3551	0/1:87:40,47:40:1436:47:1688:-107.814,0,-101.901	1/1:27:0,27:0:0:27:968:-77.6502,-8.12781,0	0/1:7:4,3:4:144:3:108:-6.81814,0,-10.7392	0/1:13:5,8:5:180:8:284:-20.3238,0,-12.4939	1/1:70:0,70:0:0:70:2501:-202.945,-21.0721,0	0/1:105:52,53:52:1849:53:1869:-117.346,0,-133.282	0/1:5:4,1:4:144:1:36:-1.68247,0,-11.3413	0/1:143:51,92:51:1817:92:3300:-220.534,0,-117.58	0/1:155:64,91:64:2281:91:3256:-213.149,0,-156.816	0/1:79:45,34:45:1616:34:1220:-74.2451,0,-120.328	0/1:76:49,27:49:1756:27:972:-54.3632,0,-133.723	1/1:145:3,142:3:104:142:5053:-393.298,-34.3686,0	0/1:76:58,18:58:2084:18:648:-29.08,0,-163.069	0/1:17:10,7:10:356:7:248:-15.4545,0,-26.7533	0/1:55:26,29:26:921:29:1025:-66.1916,0,-64.5541	0/1:82:39,43:39:1400:43:1532:-96.7165,0,-98.6194	0/1:6:1,5:1:36:5:180:-12.9107,0,-1.76063	1/1:48:0,48:0:0:48:1720:-140.278,-14.4494,0	1/1:54:0,54:0:0:54:1940:-155.964,-16.2556,0	1/1:137:0,137:0:0:137:4904:-400.077,-41.2411,0	1/1:139:0,139:0:0:139:5004:-397.279,-41.8432,0	0/1:81:40,41:40:1432:41:1472:-96.3391,0,-103.966	1/1:93:0,93:0:0:93:3329:-269.687,-27.9958,0	0/1:11:8,3:8:284:3:104:-5.57025,0,-22.4557	1/1:114:4,110:4:144:110:3933:-301.075,-21.0957,0	0/1:99:44,55:44:1576:55:1953:-128.24,0,-110.691	1/1:136:1,135:1:36:135:4837:-379.906,-37.3733,0	0/1:75:38,37:38:1347:37:1324:-83.4405,0,-97.6225	0/1:56:23,33:23:816:33:1188:-78.3398,0,-56.2337	1/1:105:0,105:0:0:105:3759:-301.362,-31.6082,0	0/1:137:69,68:69:2480:68:2444:-152.07,0,-179.642	0/1:49:27,22:27:964:22:767:-47.5976,0,-71.2913	1/1:85:0,85:0:0:85:3052:-246.465,-25.5876,0	1/1:56:0,56:0:0:56:1992:-163.712,-16.8577,0	1/1:25:0,25:0:0:25:900:-73.827,-7.52575,0	0/1:61:25,36:25:900:36:1288:-85.7839,0,-62.4237	0/1:64:44,20:44:1580:20:720:-37.6443,0,-121.646	1/1:100:2,98:2:72:98:3501:-273.026,-23.3261,0	1/1:90:0,90:0:0:90:3236:-258.425,-27.0927,0
chr05	24608727	.	C	T	152779	PASS	AB=0.506497;ABP=4.56208;AC=136;AF=0.747253;AN=182;AO=7036;CIGAR=1X;DP=9139;DPB=9139;DPRA=101.533;EPP=14671;EPPR=4371.84;GTI=2;LEN=1;MEANALT=1.04444;MQM=59.9869;MQMR=59.9971;NS=91;NUMALT=1;ODDS=0.0142255;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251583;QR=74731;RO=2099;RPL=68;RPP=14696.6;RPPR=4371.84;RPR=6968;RUN=1;SAF=7033;SAP=15255.4;SAR=3;SRF=2099;SRP=4560.93;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:26,27:26:898:27:968:-71.4828,0,-65.1777	1/1:168:0,168:0:0:168:5991:-539.295,-50.573,0	0/1:86:46,40:46:1648:40:1436:-103.649,0,-122.72	1/1:131:2,129:2:68:129:4598:-407.527,-32.9772,0	1/1:60:0,60:0:0:60:2139:-192.777,-18.0618,0	1/1:60:0,60:0:0:60:2142:-193.047,-18.0618,0	0/1:131:65,66:65:2311:66:2352:-172.504,0,-168.816	1/1:179:0,179:0:0:179:6401:-576.177,-53.8844,0	0/1:106:46,59:46:1636:59:2095:-156.851,0,-115.561	1/1:150:1,149:1:36:149:5318:-475.157,-41.5562,0	1/1:36:0,36:0:0:36:1268:-114.42,-10.8371,0	1/1:80:0,80:0:0:80:2861:-257.727,-24.0824,0	0/1:85:51,34:51:1808:34:1224:-84.8795,0,-137.411	0/1:72:34,38:34:1208:38:1364:-101.387,0,-87.3519	0/1:73:30,43:30:1080:43:1539:-116.827,0,-75.5381	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:73:35,37:35:1239:37:1332:-98.1484,0,-89.7798	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:142:56,86:56:1991:86:3076:-234.322,0,-136.717	0/1:180:97,83:97:3459:83:2984:-214.606,0,-257.337	0/1:106:77,29:77:2707:29:1044:-62.3656,0,-211.964	0/1:112:56,56:56:1964:56:2001:-146.576,0,-143.317	1/1:79:3,76:3:104:76:2719:-235.25,-14.0786,0	1/1:80:0,80:0:0:80:2866:-258.177,-24.0824,0	1/1:411:1,410:1:36:410:14664:-1315.9,-120.125,0	1/1:210:0,210:0:0:210:7528:-677.56,-63.2163,0	0/1:56:32,24:32:1144:24:851:-60.0518,0,-86.4118	0/1:215:99,116:99:3548:116:4155:-309.41,0,-254.807	0/1:173:86,87:86:3075:87:3093:-226.519,0,-224.9	1/1:121:0,121:0:0:121:4305:-387.626,-36.4246,0	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:280:0,280:0:0:280:10016:-901.375,-84.2884,0	1/1:317:0,317:0:0:317:11264:-1013.65,-95.4265,0	1/1:61:0,61:0:0:61:2147:-193.495,-18.3628,0	.:.:.:.:.:.:.:.	0/1:123:57,66:57:2040:66:2363:-175.901,0,-146.845	1/1:32:0,32:0:0:32:1138:-102.728,-9.63296,0	0/1:105:47,58:47:1667:58:2073:-155.232,0,-118.708	0/1:100:47,53:47:1664:53:1885:-139.824,0,-119.942	1/1:89:0,89:0:0:89:3193:-287.593,-26.7917,0	1/1:105:0,105:0:0:105:3747:-337.431,-31.6082,0	0/1:121:46,75:46:1647:75:2696:-206.459,0,-112.093	0/1:180:72,107:72:2568:107:3840:-291.551,0,-177.126	1/1:121:0,121:0:0:121:4304:-387.538,-36.4246,0	1/1:132:0,132:0:0:132:4714:-424.419,-39.736,0	1/1:93:0,93:0:0:93:3325:-299.466,-27.9958,0	.:.:.:.:.:.:.:.	0/1:139:65,74:65:2324:74:2660:-197.802,0,-167.577	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:65:29,36:29:1040:36:1292:-97.0168,0,-74.3474	1/1:72:0,72:0:0:72:2550:-229.749,-21.6742,0	.:.:.:.:.:.:.:.	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	0/1:127:63,64:63:2260:64:2300:-169.03,0,-165.432	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:161:79,82:79:2797:82:2944:-216.728,0,-203.504	0/1:249:134,115:134:4793:115:4119:-295.937,0,-356.568	0/1:87:39,48:39:1388:48:1724:-129.256,0,-99.0293	0/1:57:35,22:35:1260:22:792:-54.447,0,-96.5468	1/1:210:3,207:3:108:207:7393:-655.342,-53.1411,0	0/1:91:67,24:67:2387:24:864:-50.6888,0,-187.693	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:72:40,32:40:1411:32:1143:-81.5045,0,-105.612	0/1:91:48,43:48:1694:43:1539:-111.409,0,-125.348	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	1/1:145:0,145:0:0:145:5206:-468.677,-43.6494,0	1/1:49:0,49:0:0:49:1747:-157.514,-14.7505,0	1/1:163:1,162:1:36:162:5792:-517.794,-45.4696,0	1/1:123:0,123:0:0:123:4412:-397.251,-37.0267,0	0/1:118:52,66:52:1859:66:2354:-176.597,0,-132.067	1/1:87:0,87:0:0:87:3105:-279.676,-26.1896,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:85:0,85:0:0:85:3060:-275.628,-25.5876,0	0/1:64:32,32:32:1144:32:1139:-83.5525,0,-84.0036	1/1:154:0,154:0:0:154:5519:-496.834,-46.3586,0	0/1:115:51,64:51:1819:64:2279:-169.896,0,-129.372	0/1:61:28,33:28:987:33:1184:-88.5055,0,-70.7802	1/1:115:0,115:0:0:115:4115:-370.534,-34.6185,0	0/1:183:79,104:79:2803:104:3727:-280.541,0,-197.422	0/1:57:31,25:31:1112:25:896:-63.7429,0,-83.1739	1/1:88:1,87:1:36:87:3090:-274.728,-22.8924,0	1/1:88:1,87:1:36:87:3128:-278.147,-22.8924,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:59:28,31:28:991:31:1096:-81.1869,0,-71.7428	0/1:77:52,25:52:1860:25:896:-57.781,0,-144.496	1/1:81:0,81:0:0:81:2904:-261.589,-24.3834,0	1/1:130:0,130:0:0:130:4663:-419.83,-39.1339,0
chr05	24608824	.	T	C	34453.4	PASS	AB=0.487131;ABP=9.04654;AC=47;AF=0.25;AN=188;AO=2059;CIGAR=1X;DP=8566;DPB=8566;DPRA=1.15871;EPP=4353.3;EPPR=13561;GTI=1;LEN=1;MEANALT=1.01818;MQM=59.8781;MQMR=59.9416;NS=94;NUMALT=1;ODDS=1.13931;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73224;QR=233174;RO=6505;RPL=2045;RPP=4353.3;RPPR=13561;RPR=14;RUN=1;SAF=0;SAP=4474.07;SAR=2059;SRF=0;SRP=14128.4;SRR=6505;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:25,18:25:896:18:636:-44.6237,0,-68.0137	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.941	0/1:139:86,53:86:3076:53:1874:-127.065,0,-235.208	0/0:231:231,0:231:8263:0:0:0,-69.5379,-743.677	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:59:40,19:40:1428:19:684:-44.1296,0,-111.053	0/0:123:123,0:123:4400:0:0:0,-37.0267,-396.163	0/1:107:51,56:51:1832:56:1979:-146.015,0,-132.951	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.688	0/1:68:37,31:37:1311:31:1116:-80.271,0,-97.8208	0/1:36:22,14:22:792:14:496:-34.1372,0,-60.7686	0/1:73:37,36:37:1324:36:1280:-93.421,0,-97.4869	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.947	0/1:32:14,18:14:504:18:643:-48.5674,0,-36.0651	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:31:30,0:30:1076:0:0:0,-9.0309,-96.7931	0/1:214:119,95:119:4276:95:3399:-241.704,0,-320.596	0/1:154:80,74:80:2868:74:2640:-191.489,0,-211.991	0/1:154:51,103:51:1836:103:3635:-280.975,0,-119.162	0/1:144:82,62:82:2948:62:2182:-153.273,0,-222.205	0/0:55:53,2:53:1896:2:72:0,-9.71993,-164.081	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.174	0/0:209:209,0:209:7483:0:0:0,-62.9153,-673.5	0/0:231:231,0:231:8283:0:0:0,-69.5379,-745.477	0/1:43:26,17:26:936:17:603:-41.6552,0,-71.6152	0/1:302:153,149:153:5477:149:5304:-386.585,0,-402.144	0/1:60:35,25:35:1238:25:877:-61.1824,0,-93.5034	0/0:102:99,3:99:3548:3:108:0,-20.6299,-309.453	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:228:228,0:228:8184:0:0:0,-68.6348,-736.476	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:112:56,56:56:2008:56:1981:-144.74,0,-147.276	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:155:73,82:73:2608:82:2940:-218.174,0,-188.272	0/1:62:35,27:35:1256:27:972:-69.134,0,-94.6814	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.608	0/0:129:129,0:129:4615:0:0:0,-38.8329,-415.513	0/1:118:48,70:48:1720:70:2482:-188.111,0,-119.564	0/1:214:116,98:116:4155:98:3503:-251.015,0,-309.712	0/0:99:99,0:99:3527:0:0:0,-29.802,-317.64	0/0:130:129,1:129:4619:1:36:0,-35.5356,-412.274	0/0:144:142,2:142:5104:2:68:0,-36.8906,-453.041	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:123:67,56:67:2412:56:2008:-143.966,0,-180.309	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:186:95,91:95:3408:91:3215:-233.582,0,-250.942	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.169	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:110:60,50:60:2156:50:1779:-127.276,0,-161.194	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:151:72,79:72:2592:79:2832:-209.663,0,-188.073	0/1:97:49,48:49:1756:48:1728:-126.604,0,-129.124	0/1:48:29,19:29:1044:19:684:-47.4409,0,-79.8254	0/1:86:55,31:55:1972:31:1104:-73.7821,0,-151.864	0/0:186:185,1:185:6644:1:36:0,-52.3933,-594.424	0/1:174:69,105:69:2476:105:3732:-283.701,0,-170.714	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/1:61:31,30:31:1108:30:1068:-78.0649,0,-81.6682	0/1:60:33,27:33:1184:27:955:-68.2031,0,-88.8065	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.085	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/0:164:164,0:164:5888:0:0:0,-49.3689,-530.026	0/1:118:56,62:56:2008:62:2204:-163.104,0,-145.472	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.406	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.0704	0/0:136:136,0:136:4876:0:0:0,-40.9401,-438.992	0/1:130:66,63:66:2360:63:2244:-163.027,0,-172.529	0/0:209:207,2:207:7422:2:72:0,-56.0785,-660.387	0/1:80:33,47:33:1184:47:1658:-125.417,0,-82.7859	0/1:75:40,35:40:1440:35:1223:-87.7074,0,-107.32	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:153:84,69:84:3016:69:2443:-174.068,0,-225.606	0/1:37:13,24:13:460:24:851:-65.7713,0,-30.5973	0/0:73:73,0:73:2620:0:0:0,-21.9752,-235.82	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.862	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:72:36,36:36:1288:36:1269:-92.8366,0,-94.5494	0/1:61:27,34:27:968:34:1205:-90.3924,0,-69.0745	0/0:179:178,1:178:6368:1:36:0,-50.2861,-569.609	0/0:113:110,3:110:3952:3:108:0,-23.9412,-345.795
chr05	24752860	.	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chr05	24761082	.	C	G	168221	PASS	AB=0.485844;ABP=11.4328;AC=140;AF=0.752688;AN=186;AO=7965;CIGAR=1X;DP=10478;DPB=10478;DPRA=0;EPP=17298.8;EPPR=5427.36;GTI=0;LEN=1;MEANALT=1.07527;MQM=59.9188;MQMR=59.9952;NS=93;NUMALT=1;ODDS=5.49028;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284062;QR=88826;RO=2506;RPL=7964;RPP=17290.1;RPPR=5427.36;RPR=1;RUN=1;SAF=7964;SAP=17290.1;SAR=1;SRF=2506;SRP=5444.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:31,30:31:1108:30:1072:-78.4051,0,-81.6682	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	0/1:127:63,64:63:2240:64:2273:-166.599,0,-163.633	1/1:226:2,224:2:72:224:8016:-714.623,-61.1961,0	1/1:104:0,104:0:0:104:3700:-333.196,-31.3071,0	1/1:98:0,98:0:0:98:3484:-313.771,-29.5009,0	0/1:186:97,89:97:3472:89:3164:-228.991,0,-256.7	1/1:197:0,196:0:0:196:6970:-626.899,-59.0019,0	0/1:148:62,86:62:2195:86:3069:-231.885,0,-153.263	1/1:130:0,130:0:0:130:4668:-420.28,-39.1339,0	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	1/1:80:0,80:0:0:80:2834:-255.299,-24.0824,0	0/1:63:32,31:32:1135:31:1082:-78.7222,0,-83.4932	0/1:68:39,29:39:1388:29:1040:-73.4443,0,-104.749	0/1:80:40,40:40:1440:40:1418:-103.833,0,-105.815	1/1:52:0,52:0:0:52:1812:-163.35,-15.6536,0	0/1:56:31,25:31:1108:25:892:-63.7338,0,-83.1733	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	1/1:26:0,26:0:0:26:915:-82.6656,-7.82678,0	0/1:259:145,114:145:5158:114:4065:-288.061,0,-386.397	0/1:164:94,70:94:3342:70:2508:-176.603,0,-251.629	0/1:191:121,69:121:4269:69:2454:-163.643,0,-326.948	0/1:98:48,50:48:1716:50:1784:-131.335,0,-125.225	1/1:190:8,181:8:266:181:6413:-552.993,-32.9878,0	1/1:115:0,114:0:0:114:4033:-362.747,-34.3174,0	1/1:445:1,444:1:36:444:15855:-1422.79,-130.36,0	1/1:307:0,307:0:0:307:10984:-988.443,-92.4162,0	0/1:28:12,16:12:432:16:572:-43.3846,0,-30.7924	0/1:355:180,175:180:6377:175:6272:-457.689,0,-467.158	0/1:149:70,79:70:2473:79:2818:-208.989,0,-177.97	1/1:152:0,152:0:0:152:5440:-489.729,-45.7566,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:8:0,8:0:0:8:277:-25.2651,-2.40824,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:183:0,183:0:0:183:6538:-588.503,-55.0885,0	1/1:292:1,291:1:36:291:10395:-931.871,-84.3025,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:233:111,122:111:3945:122:4380:-324.232,0,-285.103	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:236:119,117:119:4172:117:4180:-305.332,0,-304.623	0/1:37:19,18:19:667:18:621:-45.0731,0,-49.2165	1/1:60:0,60:0:0:60:2119:-190.976,-18.0618,0	1/1:192:0,192:0:0:192:6868:-617.748,-57.7978,0	0/1:126:50,76:50:1757:76:2705:-205.765,0,-120.482	0/1:267:143,124:143:5050:124:4406:-316.334,0,-374.275	1/1:130:0,130:0:0:130:4634:-417.221,-39.1339,0	1/1:116:0,116:0:0:116:4164:-374.941,-34.9195,0	1/1:255:0,255:0:0:255:9076:-816.793,-76.7627,0	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:102:55,47:55:1964:47:1672:-120.062,0,-146.33	1/1:80:0,80:0:0:80:2864:-257.995,-24.0824,0	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:136:72,64:72:2564:64:2279:-164.432,0,-190.071	1/1:97:1,96:1:36:96:3436:-305.853,-25.6016,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	1/1:98:0,98:0:0:98:3507:-315.827,-29.5009,0	0/1:97:50,47:50:1783:47:1675:-121.837,0,-131.552	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:114:56,58:56:1973:58:2075:-152.701,0,-143.526	0/1:240:141,99:141:5006:99:3518:-244.572,0,-378.444	0/1:81:34,47:34:1200:47:1680:-127.104,0,-83.9222	0/1:99:60,39:60:2131:39:1389:-95.5046,0,-162.256	1/1:206:4,202:4:144:202:7203:-635.009,-48.6986,0	0/1:91:66,25:66:2338:25:896:-53.5666,0,-183.285	0/1:14:6,8:6:212:8:280:-21.3249,0,-15.2104	0/1:101:45,55:45:1608:55:1963:-146.482,0,-114.547	0/1:50:22,28:22:773:28:967:-72.2863,0,-54.838	0/1:22:9,13:9:312:13:453:-34.4721,0,-21.7927	1/1:191:1,189:1:36:189:6736:-602.712,-53.9573,0	1/1:78:0,78:0:0:78:2792:-251.507,-23.4803,0	1/1:153:0,153:0:0:153:5429:-488.729,-46.0576,0	1/1:186:0,186:0:0:186:6650:-598.546,-55.9916,0	0/1:174:94,80:94:3339:80:2868:-205.978,0,-248.332	1/1:106:1,105:1:36:105:3764:-335.361,-28.3109,0	.:.:.:.:.:.:.:.	1/1:136:0,136:0:0:136:4858:-437.373,-40.9401,0	0/1:98:46,52:46:1611:52:1848:-137.099,0,-115.775	1/1:360:1,359:1:36:359:12839:-1151.72,-104.773,0	0/1:97:37,60:37:1291:60:2148:-164.388,0,-87.2875	0/1:41:19,22:19:671:22:784:-58.4116,0,-48.3736	1/1:60:1,59:1:36:59:2108:-186.391,-14.4635,0	0/1:139:62,77:62:2203:77:2727:-203.806,0,-156.692	0/1:37:13,23:13:468:23:807:-61.8095,0,-31.3183	1/1:71:0,71:0:0:71:2495:-224.803,-21.3731,0	1/1:62:0,62:0:0:62:2211:-199.251,-18.6639,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:56:24,32:24:845:32:1144:-86.4118,0,-59.5094	0/1:57:35,22:35:1208:22:776:-53.0034,0,-91.8586	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:86:0,86:0:0:86:3080:-277.428,-25.8886,0
chr05	24781245	.	A	C	41029.8	PASS	AB=0.527249;ABP=32.477;AC=47;AF=0.255435;AN=184;AO=2427;CIGAR=1X;DP=9131;DPB=9131;DPRA=1.21665;EPP=5264.49;EPPR=14402.4;GTI=1;LEN=1;MEANALT=1.03704;MQM=59.9815;MQMR=59.9895;NS=92;NUMALT=1;ODDS=2.92232;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86243;QR=239076;RO=6695;RPL=1;RPP=5264.49;RPPR=14411;RPR=2426;RUN=1;SAF=2427;SAP=5273.17;SAR=0;SRF=6694;SRP=14532.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:17,13:17:612:13:464:-33.0666,0,-46.3825	0/0:145:145,0:145:5148:0:0:0,-43.6493,-463.459	0/1:129:48,81:48:1705:81:2880:-220.286,0,-114.901	0/0:192:191,1:191:6758:1:36:0,-54.1995,-604.694	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:23:23,0:23:798:0:0:0,-6.92369,-72.1341	0/1:64:28,36:28:1004:36:1288:-96.9577,0,-71.4099	0/0:201:198,3:198:7063:3:108:0,-50.4319,-625.653	0/1:67:35,32:35:1252:32:1140:-82.7402,0,-92.8161	0/0:144:144,0:144:5118:0:0:0,-43.3483,-460.674	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:70:34,36:34:1224:36:1276:-94.071,0,-89.3949	0/1:111:49,62:49:1760:62:2203:-165.119,0,-125.241	0/1:69:39,30:39:1392:30:1067:-75.5701,0,-104.808	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:92:51,41:51:1813:41:1456:-103.641,0,-135.755	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:224:122,102:122:4369:102:3647:-261.003,0,-325.951	0/1:173:73,100:73:2570:100:3542:-266.91,0,-179.47	0/1:72:19,53:19:669:53:1877:-147.533,0,-38.8598	0/1:37:18,19:18:648:19:672:-49.6687,0,-47.5138	0/0:69:64,5:64:2304:5:180:0,-4.219,-191.068	0/0:73:72,0:72:2580:0:0:0,-21.6742,-232.089	0/0:338:338,0:338:12057:0:0:0,-101.748,-1084.98	0/0:274:273,0:273:9746:0:0:0,-82.1812,-876.728	0/1:32:13,19:13:464:19:676:-51.535,0,-32.4645	0/1:322:168,153:168:5972:153:5420:-390.942,0,-440.586	0/1:175:72,103:72:2569:103:3646:-275.667,0,-178.778	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	.:.:.:.:.:.:.:.	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	.:.:.:.:.:.:.:.	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:158:158,0:158:5650:0:0:0,-47.5627,-508.617	0/0:209:209,0:209:7465:0:0:0,-62.9153,-671.892	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:148:64,84:64:2300:84:2976:-223.522,0,-162.708	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/1:121:59,62:59:2071:62:2188:-160.759,0,-150.231	0/1:83:38,45:38:1368:45:1601:-119.393,0,-98.4353	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:99:99,0:99:3526:0:0:0,-29.802,-317.547	0/1:114:56,58:56:2008:58:2068:-152.074,0,-146.676	0/1:211:103,108:103:3685:108:3823:-280.75,0,-268.334	0/0:117:117,0:117:4185:0:0:0,-35.2205,-376.83	0/0:166:166,0:166:5916:0:0:0,-49.971,-532.545	0/0:69:69,0:69:2465:0:0:0,-20.7711,-221.833	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	0/1:167:83,84:83:2934:84:3004:-220.32,0,-214.021	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/1:16:9,7:9:320:7:244:-17.4829,0,-24.3259	0/1:157:83,74:83:2972:74:2605:-187.438,0,-220.451	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:23:11,12:11:381:12:432:-32.2975,0,-27.6969	0/0:50:50,0:50:1766:0:0:0,-15.0515,-159.219	0/1:100:52,48:52:1849:48:1701:-123.271,0,-136.585	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:257:121,135:121:4321:135:4804:-355.096,0,-311.642	0/1:172:97,75:97:3446:75:2677:-189.398,0,-258.574	0/1:76:42,34:42:1496:34:1224:-87.5888,0,-112.056	0/1:90:44,46:44:1580:46:1629:-119.804,0,-115.399	0/0:204:201,3:201:7194:3:108:0,-51.3349,-637.436	0/1:100:31,69:31:1112:69:2464:-191.911,0,-70.2883	0/1:36:14,22:14:504:22:792:-60.7686,0,-34.861	0/1:120:61,59:61:2180:59:2120:-154.945,0,-160.343	0/1:92:40,52:40:1428:52:1860:-139.985,0,-101.123	0/1:18:6,12:6:216:12:424:-33.0779,0,-14.372	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:188:187,0:187:6709:0:0:0,-56.2926,-603.562	0/0:163:162,0:162:5813:0:0:0,-48.7669,-522.92	0/1:111:56,55:56:1985:55:1955:-142.811,0,-145.508	0/0:148:146,2:146:5195:2:68:0,-38.0947,-461.23	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/0:136:135,1:135:4833:1:36:0,-37.3418,-431.524	0/1:137:56,81:56:1997:81:2857:-216.126,0,-138.761	0/0:179:178,1:178:6339:1:36:0,-50.2861,-566.995	0/1:86:38,48:38:1364:48:1713:-128.566,0,-97.1721	0/1:70:30,40:30:1080:40:1428:-107.745,0,-76.4412	0/0:78:77,0:77:2768:0:0:0,-23.1793,-249.001	0/1:157:72,85:72:2577:85:3011:-223.958,0,-184.916	0/1:43:18,25:18:648:25:900:-68.3767,0,-45.7076	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:39:37,0:37:1328:0:0:0,-11.1381,-119.462	0/1:95:43,52:43:1533:52:1825:-135.928,0,-109.663	0/1:65:21,44:21:752:44:1556:-120.763,0,-48.4393	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.151	0/0:86:85,1:85:3041:1:36:0,-22.2903,-270.32
chr05	24852089	.	G	C	139971	PASS	AB=0.48493;ABP=11.1261;AC=137;AF=0.728723;AN=188;AO=6631;CIGAR=1X;DP=8766;DPB=8766;DPRA=94.2473;EPP=14384.7;EPPR=4600.05;GTI=2;LEN=1;MEANALT=1.05376;MQM=59.4909;MQMR=59.9972;NS=94;NUMALT=1;ODDS=0.889925;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236699;QR=76006;RO=2129;RPL=0;RPP=14402;RPPR=4608.72;RPR=6631;RUN=1;SAF=6629;SAP=14384.7;SAR=2;SRF=2128;SRP=4617.39;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:25,9:25:879:9:316:-18.5438,0,-69.1918	1/1:214:0,213:0:0:213:7590:-682.499,-64.1194,0	0/1:109:74,35:74:2656:35:1260:-80.8817,0,-206.469	1/1:197:0,197:0:0:197:7028:-632.385,-59.3029,0	1/1:83:1,82:1:36:82:2928:-260.055,-21.3872,0	1/1:71:0,71:0:0:71:2539:-228.708,-21.3731,0	0/1:105:54,51:54:1913:51:1820:-132.473,0,-140.837	1/1:227:1,226:1:36:226:8062:-720.951,-64.7355,0	0/1:81:45,36:45:1612:36:1292:-92.1857,0,-120.987	1/1:104:0,104:0:0:104:3723:-335.236,-31.3071,0	1/1:49:0,49:0:0:49:1756:-158.315,-14.7505,0	1/1:67:0,67:0:0:67:2391:-215.249,-20.169,0	0/1:75:33,42:33:1184:42:1508:-113.421,0,-84.2911	0/1:91:51,40:51:1828:40:1432:-101.77,0,-137.407	0/1:82:41,41:41:1449:41:1476:-108.447,0,-106.019	1/1:78:0,78:0:0:78:2796:-251.864,-23.4803,0	0/1:86:40,46:40:1436:46:1652:-122.966,0,-103.649	1/1:84:0,84:0:0:84:3018:-271.809,-25.2865,0	1/1:48:0,48:0:0:48:1724:-155.432,-14.4494,0	0/1:139:60,79:60:2139:79:2819:-212.091,0,-150.934	0/1:142:73,69:73:2608:69:2467:-179.185,0,-192.222	0/1:40:28,12:28:992:12:428:-26.8176,0,-77.5532	0/1:29:21,8:21:752:8:288:-17.5375,0,-59.2764	1/1:125:5,120:5:176:120:4264:-367.298,-21.4437,0	1/1:90:0,90:0:0:90:3207:-288.828,-27.0927,0	1/1:308:2,306:2:72:306:10921:-975.168,-85.8805,0	1/1:264:0,263:0:0:263:9375:-842.416,-79.1709,0	0/1:45:26,19:26:932:19:675:-47.5283,0,-70.6525	0/1:201:100,101:100:3588:101:3611:-264.63,0,-262.619	0/1:194:81,113:81:2880:113:4045:-305.797,0,-201.035	1/1:84:0,84:0:0:84:3002:-270.406,-25.2865,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:11:0,11:0:0:11:392:-35.6154,-3.31133,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:212:-19.4192,-1.80618,0	1/1:212:0,212:0:0:212:7572:-681.083,-63.8184,0	1/1:134:0,132:0:0:132:4699:-422.67,-39.736,0	1/1:70:0,70:0:0:70:2502:-225.12,-21.0721,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:136:76,60:76:2708:60:2143:-152.191,0,-203.025	1/1:30:0,30:0:0:30:1076:-97.1519,-9.0309,0	0/1:108:59,49:59:2097:49:1743:-124.637,0,-156.487	0/1:77:39,38:39:1396:38:1364:-99.8791,0,-102.76	1/1:84:0,84:0:0:84:2997:-269.849,-25.2865,0	1/1:93:0,93:0:0:93:3326:-299.532,-27.9958,0	0/1:112:53,58:53:1908:58:2048:-150.79,0,-138.223	0/1:117:64,53:64:2264:53:1891:-135.244,0,-168.8	0/1:71:46,25:46:1628:25:895:-58.8665,0,-125.436	1/1:169:0,169:0:0:169:6038:-543.4,-50.8741,0	1/1:85:0,85:0:0:85:3034:-273.29,-25.5876,0	0/1:13:4,9:4:144:9:324:-25.5901,0,-9.40023	0/1:119:58,61:58:2068:61:2180:-160.485,0,-150.568	1/1:34:0,34:0:0:34:1204:-108.016,-10.235,0	0/1:10:5,5:5:180:5:180:-13.5334,0,-13.5418	0/1:121:61,60:61:2184:60:2132:-155.624,0,-160.401	0/1:29:15,14:15:536:14:500:-36.6063,0,-39.8449	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	1/1:86:0,86:0:0:86:3086:-277.659,-25.8886,0	0/1:108:51,57:51:1819:57:2039:-151.235,0,-131.479	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:89:49,40:49:1748:40:1428:-101.989,0,-130.813	0/1:204:82,122:82:2897:122:4329:-328.347,0,-199.554	0/1:105:43,62:43:1532:62:2224:-168.799,0,-106.565	0/1:48:21,27:21:748:27:956:-71.9039,0,-53.1959	1/1:111:0,111:0:0:111:3955:-356.128,-33.4143,0	0/1:85:50,35:50:1787:35:1260:-88.1156,0,-135.524	0/1:20:7,13:7:252:13:464:-36.0769,0,-17.0084	0/1:56:31,25:31:1112:25:900:-64.4375,0,-83.5337	0/1:119:61,58:61:2180:58:2074:-151.096,0,-160.644	0/1:10:7,3:7:248:3:104:-6.69251,0,-19.6539	1/1:49:0,49:0:0:49:1752:-157.956,-14.7505,0	1/1:75:0,75:0:0:75:2668:-240.246,-22.5773,0	1/1:182:0,181:0:0:181:6465:-581.544,-54.4864,0	1/1:122:1,121:1:36:121:4304:-383.319,-33.1274,0	0/1:211:116,95:116:4143:95:3383:-241.107,0,-309.537	1/1:166:0,166:0:0:166:5951:-535.684,-49.971,0	0/1:16:9,7:9:324:7:248:-17.8312,0,-24.6894	1/1:142:0,142:0:0:142:5058:-454.71,-42.7463,0	0/1:99:56,43:56:2012:43:1536:-108.711,0,-151.551	1/1:146:0,146:0:0:146:5190:-466.446,-43.9504,0	0/1:140:68,72:68:2444:72:2575:-189.792,0,-178.07	0/1:55:27,28:27:968:28:1008:-74.4797,0,-70.8807	1/1:99:0,99:0:0:99:3542:-318.915,-29.802,0	0/1:156:81,75:81:2912:75:2683:-194.708,0,-215.354	0/1:52:30,22:30:1076:22:780:-54.7303,0,-81.4993	1/1:90:0,90:0:0:90:3203:-288.466,-27.0927,0	1/1:67:0,67:0:0:67:2400:-216.042,-20.169,0	1/1:39:0,39:0:0:39:1382:-124.677,-11.7402,0	0/1:74:36,38:36:1296:38:1347:-99.2351,0,-94.6677	0/1:66:39,27:39:1367:27:972:-67.7326,0,-103.457	1/1:94:0,94:0:0:94:3369:-303.232,-28.2968,0	1/1:148:0,148:0:0:148:5239:-470.45,-44.5524,0
chr05	24853213	.	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chr05	24860904	.	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chr05	24860916	.	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chr05	24860925	.	G	C	32827.5	PASS	AB=0.571253;ABP=146.904;AC=52;AF=0.27957;AN=186;AO=1873;CIGAR=1X;DP=6126;DPB=6126;DPRA=1.06605;EPP=4035.51;EPPR=9091.15;GTI=1;LEN=1;MEANALT=1.03636;MQM=58.8996;MQMR=59.8699;NS=93;NUMALT=1;ODDS=1.78338;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66945;QR=151547;RO=4249;RPL=1869;RPP=4035.51;RPPR=9091.15;RPR=4;RUN=1;SAF=0;SAP=4070.18;SAR=1873;SRF=0;SRP=9229.6;SRR=4249;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:7,19:7:252:19:667:-52.4919,0,-15.2022	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.585	0/1:122:37,85:37:1332:85:3035:-236.587,0,-83.4205	0/0:173:173,0:173:6180:0:0:0,-52.0782,-556.244	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.3	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:73:38,35:38:1360:35:1243:-90.1862,0,-100.725	0/0:82:82,0:82:2912:0:0:0,-24.6845,-262.312	0/1:69:31,38:31:1097:38:1360:-101.886,0,-78.2667	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.467	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.289	0/0:70:70,0:70:2488:0:0:0,-21.0721,-224.136	0/1:67:39,28:39:1391:28:996:-69.2751,0,-104.949	0/1:63:30,33:30:1068:33:1188:-88.2188,0,-77.4672	0/1:53:30,23:30:1076:23:828:-58.8807,0,-81.1979	0/0:42:42,0:42:1485:0:0:0,-12.6433,-133.943	0/1:31:14,17:14:504:17:604:-45.2868,0,-36.3662	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:210:91,119:91:3260:119:4254:-319.086,0,-230.372	0/1:182:90,92:90:3202:92:3300:-242.386,0,-232.254	0/1:73:18,55:18:648:55:1976:-154.485,0,-36.6767	0/1:71:27,44:27:968:44:1571:-120.203,0,-66.0638	0/1:34:20,14:20:712:14:500:-35.1012,0,-54.1716	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:227:227,0:227:8072:0:0:0,-68.3338,-726.47	0/0:123:123,0:123:4383:0:0:0,-37.0267,-394.599	0/1:18:9,9:9:315:9:324:-24.0873,0,-23.2687	0/1:261:108,153:108:3851:153:5488:-414.646,0,-268.218	0/1:68:37,31:37:1332:31:1104:-79.182,0,-99.7123	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.484	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:186:186,0:186:6656:0:0:0,-55.9916,-598.801	0/0:99:99,0:99:3515:0:0:0,-29.802,-316.545	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	.:.:.:.:.:.:.:.	0/1:85:40,44:40:1424:44:1559:-114.887,0,-102.816	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:77:13,64:13:460:64:2272:-181.528,0,-18.5561	0/1:33:10,23:10:360:23:816:-63.7562,0,-22.8099	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.439	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/1:64:30,34:30:1063:34:1220:-90.7335,0,-76.7149	0/1:141:47,94:47:1676:94:3367:-260.753,0,-108.682	0/1:122:50,72:50:1780:72:2575:-195.055,0,-123.757	0/0:63:62,1:62:2205:1:36:0,-15.3671,-195.115	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:5:1,4:1:36:4:144:-11.8068,0,-2.09312	0/1:69:37,32:37:1311:32:1133:-81.5056,0,-97.0914	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:8:4,4:4:144:4:144:-10.8687,0,-10.9054	0/1:103:31,72:31:1108:72:2571:-200.573,0,-69.0249	0/1:22:9,13:9:324:13:464:-35.3803,0,-22.8824	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:86:45,41:45:1567:41:1468:-106.467,0,-115.428	1/1:1:0,1:0:0:1:36:-3.59783,-0.30103,0	0/1:126:37,89:37:1328:89:3178:-248.182,0,-81.8901	0/1:134:65,68:65:2301:68:2432:-178.476,0,-166.95	0/1:40:21,19:21:726:19:684:-49.8491,0,-53.6173	0/1:52:18,34:18:640:34:1224:-94.7557,0,-42.2754	0/0:145:144,1:144:5127:1:36:0,-40.0515,-457.929	0/1:88:23,65:23:828:65:2305:-181.089,0,-48.3527	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/1:47:22,25:22:783:25:900:-67.1009,0,-56.6445	0/1:24:10,14:10:360:14:496:-37.7305,0,-25.5149	0/1:10:3,7:3:108:7:252:-19.9711,0,-7.06487	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.213	0/0:71:70,1:70:2516:1:32:0,-18.1901,-223.48	0/0:85:85,0:85:3022:0:0:0,-25.5875,-272.093	0/0:167:165,0:165:5874:0:0:0,-49.6699,-528.412	0/1:59:31,28:31:1116:28:997:-72.2085,0,-82.9909	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.876	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:88:87,1:87:3100:1:36:0,-22.8924,-275.628	0/1:75:41,34:41:1472:34:1216:-87.1693,0,-110.199	0/0:178:178,0:178:6349:0:0:0,-53.5833,-571.009	0/1:47:28,19:28:1004:19:671:-46.5157,0,-76.5275	0/1:63:30,33:30:1076:33:1188:-88.2067,0,-78.1872	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:94:57,37:57:2027:37:1328:-91.512,0,-154.391	0/1:10:4,6:4:144:6:207:-15.9566,0,-10.3033	0/0:58:58,0:58:2050:0:0:0,-17.4597,-184.771	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/1:59:23,36:23:812:36:1292:-98.7781,0,-55.6401	0/1:48:21,27:21:756:27:968:-72.8436,0,-53.9178	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.83	0/0:83:82,1:82:2944:1:36:0,-21.3877,-261.431
chr05	24879549	.	CGAA	CGAG,TGAG	295401	PASS	AB=0.512479,0.4827;ABP=12.5485,21.3428;AC=138,50;AF=0.734043,0.265957;AN=188;AO=9605,3425;CIGAR=3M1X,1X2M1X;DP=13097;DPB=13102;DPRA=0,1.60917;EPP=17514.4,6362.03;EPPR=0;GTI=0;LEN=1,4;MEANALT=2.34043,2.72308;MQM=59.9747,59.2117;MQMR=0;NS=94;NUMALT=2;ODDS=2.85492;PAIRED=0,0;PAIREDR=0;PAO=8,8;PQA=282,282;PQR=0;PRO=4;QA=341811,120842;QR=0;RO=0;RPL=9203,3296;RPP=17514.4,6362.03;RPPR=0;RPR=402,129;RUN=1,1;SAF=0,0;SAP=20860,7440.3;SAR=9605,3425;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:48:0,23,25:0:0:23,25:801,874:-136.435,-71.3002,-64.3765,-65.483,0,-57.9573	1/1:61:0,60,1:0:0:60,1:2131,36:-191.698,-18.0618,0,-188.761,-14.7646,-188.46	1/2:102:0,57,45:0:0:57,45:2013,1569:-291.736,-127.803,-110.644,-164.283,0,-150.737	1/1:119:0,117,1:0:0:117,1:4161,36:-374.378,-35.2205,0,-371.44,-32.2182,-371.139	1/1:32:0,31,1:0:0:31,1:1082,35:-97.3374,-9.33193,0,-94.4896,-6.13433,-94.1886	1/1:25:0,25,0:0:0:25,0:872,0:-78.7945,-7.52575,0,-78.7945,-7.52575,-78.7945	1/2:78:0,40,38:0:0:40,38:1403,1337:-223.253,-109.075,-97.0338,-114.458,0,-103.019	1/1:68:0,66,1:0:0:66,1:2372,30:-213.407,-19.868,0,-211.009,-17.4993,-210.708	1/2:48:0,22,25:0:0:22,25:783,877:-135.179,-71.3617,-64.7391,-63.8583,0,-56.3326	1/1:37:0,37,0:0:0:37,0:1319,0:-119.011,-11.1381,0,-119.011,-11.1381,-119.011	1/1:269:0,268,1:0:0:268,1:9553,36:-859.308,-80.676,0,-856.37,-77.3788,-856.069	1/1:83:0,83,0:0:0:83,0:2961,0:-266.722,-24.9855,0,-266.722,-24.9855,-266.722	1/2:69:0,36,32:0:0:36,32:1262,1129:-194.155,-92.0194,-81.1824,-102.242,0,-92.6087	1/2:39:0,16,23:0:0:16,23:576,823:-114.465,-67.4652,-62.6487,-47.3585,0,-40.4348	1/2:45:0,17,28:0:0:17,28:612,1007:-132.454,-82.5175,-77.4,-50.2959,0,-41.8671	1/1:38:0,38,0:0:0:38,0:1336,0:-120.471,-11.4391,0,-120.471,-11.4391,-120.471	1/2:18:0,9,8:0:0:9,8:320,272:-47.4985,-21.4103,-18.701,-26.0745,0,-23.6663	1/1:18:0,18,0:0:0:18,0:629,0:-56.9292,-5.41854,0,-56.9292,-5.41854,-56.9292	1/1:107:0,107,0:0:0:107,0:3802,0:-342.377,-32.2102,0,-342.377,-32.2102,-342.377	1/2:73:0,47,25:0:0:47,25:1688,890:-210.323,-72.6196,-58.4712,-137.787,0,-130.261	1/2:84:0,34,50:0:0:34,50:1216,1767:-243.089,-143.933,-133.697,-99.5115,0,-84.46	1/2:80:0,38,42:0:0:38,42:1356,1474:-230.71,-120.162,-108.723,-110.901,0,-98.2581	1/2:104:0,48,55:0:0:48,55:1707,1961:-298.998,-159.887,-145.438,-139.165,0,-122.608	1/1:15:0,14,1:0:0:14,1:490,35:-44.0813,-4.21442,0,-41.2335,-1.01682,-40.9325	1/1:52:0,51,0:0:0:51,0:1813,0:-163.198,-15.3525,0,-163.198,-15.3525,-163.198	1/1:44:0,44,0:0:0:44,0:1550,0:-139.79,-13.2453,0,-139.79,-13.2453,-139.79	1/1:156:0,155,1:0:0:155,1:5499,36:-494.68,-46.6597,0,-491.742,-43.3624,-491.441	1/2:12:0,5,7:0:0:5,7:180,250:-35.3173,-20.6283,-19.1232,-15.0469,0,-12.9397	1/2:135:0,91,44:0:0:91,44:3215,1558:-389.093,-127.267,-99.8731,-262.18,0,-248.935	1/2:103:0,56,47:0:0:56,47:1993,1676:-299.267,-136.969,-120.111,-162.655,0,-148.506	1/1:73:0,72,0:0:0:72,0:2547,0:-229.208,-21.6742,0,-229.208,-21.6742,-229.208	1/2:411:0,202,207:0:0:202,207:7219,7307:-1183.55,-594.95,-534.142,-588.701,0,-526.388	1/1:901:0,888,7:0:0:888,7:31581,252:-2840.86,-267.315,0,-2820.29,-246.744,-2818.19	1/1:250:0,250,0:0:0:250,0:8860,0:-797.392,-75.2575,0,-797.392,-75.2575,-797.392	1/1:756:0,752,1:0:0:752,1:26756,30:-2407.04,-226.375,0,-2404.64,-223.962,-2404.34	1/1:663:0,658,0:0:0:658,0:23465,0:-2110.92,-198.078,0,-2110.92,-198.078,-2110.92	1/1:128:0,128,0:0:0:128,0:4538,0:-408.589,-38.5318,0,-408.589,-38.5318,-408.589	1/1:105:0,104,0:0:0:104,0:3696,0:-332.503,-31.3071,0,-332.503,-31.3071,-332.503	1/1:238:0,237,0:0:0:237,0:8454,0:-760.51,-71.3441,0,-760.51,-71.3441,-760.51	1/2:205:0,107,97:0:0:107,97:3831,3437:-592.375,-279.956,-247.745,-312.416,0,-283.216	1/2:85:0,46,39:0:0:46,39:1628,1364:-243.918,-111.311,-97.4633,-132.959,0,-121.219	1/1:132:0,132,0:0:0:132,0:4739,0:-426.667,-39.736,0,-426.667,-39.736,-426.667	1/2:75:0,46,29:0:0:46,29:1644,1023:-217.687,-83.6404,-69.793,-134.401,0,-125.671	1/2:40:0,24,16:0:0:24,16:849,542:-113.439,-44.2802,-37.0555,-69.5031,0,-64.6866	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/1:78:0,76,1:0:0:76,1:2703,36:-243.184,-22.8783,0,-240.246,-19.9109,-239.945	1/2:83:0,42,41:0:0:42,41:1500,1449:-240.628,-118.332,-105.689,-122.651,0,-110.309	1/2:74:0,46,28:0:0:46,28:1652,974:-214.281,-79.5177,-65.6703,-135.115,0,-126.686	1/2:55:0,26,29:0:0:26,29:932,1024:-159.745,-83.7289,-75.9021,-76.3721,0,-67.6422	1/1:44:0,44,0:0:0:44,0:1576,0:-142.132,-13.2453,0,-142.132,-13.2453,-142.132	1/1:40:0,40,0:0:0:40,0:1440,0:-129.898,-12.0412,0,-129.898,-12.0412,-129.898	1/2:541:0,333,205:0:0:333,205:11872,7240:-1557.19,-589.457,-489.214,-967.771,0,-906.06	1/2:84:0,44,40:0:0:44,40:1568,1387:-240.813,-112.998,-99.7522,-128.166,0,-116.125	1/1:67:0,67,0:0:0:67,0:2388,0:-215.178,-20.169,0,-215.178,-20.169,-215.178	1/2:249:0,121,125:0:0:121,125:4287,4411:-707.049,-358.782,-322.357,-348.261,0,-310.633	1/2:89:0,50,39:0:0:50,39:1792,1367:-257.732,-111.575,-96.5232,-146.511,0,-134.771	1/2:35: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chr05	24879558	.	C	T	50989.1	PASS	AB=0.461869;ABP=88.1282;AC=50;AF=0.265957;AN=188;AO=3131;CIGAR=1X;DP=12816;DPB=12816;DPRA=1.20332;EPP=6603.58;EPPR=19173.8;GTI=0;LEN=1;MEANALT=1.06452;MQM=59.2718;MQMR=59.9844;NS=94;NUMALT=1;ODDS=15.2884;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110628;QR=344587;RO=9677;RPL=3108;RPP=6603.58;RPPR=19173.8;RPR=23;RUN=1;SAF=0;SAP=6801.89;SAR=3131;SRF=0;SRP=21016.3;SRR=9677;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:24,23:24:864:23:817:-59.3855,0,-63.9342	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/1:96:54,42:54:1932:42:1489:-105.249,0,-145.258	0/0:119:118,1:118:4183:1:36:0,-32.2243,-373.055	0/0:31:30,1:30:1072:1:36:0,-5.73365,-93.1942	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:72:39,33:39:1400:33:1180:-84.8315,0,-104.625	0/0:67:66,1:66:2363:1:36:0,-16.5707,-209.329	0/1:47:23,24:23:815:24:856:-63.1057,0,-59.5224	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:274:273,1:273:9693:1:32:0,-79.2829,-869.095	0/0:82:82,0:82:2907:0:0:0,-24.6845,-261.867	0/1:66:35,31:35:1235:31:1092:-78.1446,0,-91.5855	0/1:40:19,21:19:671:21:748:-55.5995,0,-48.6746	0/1:43:17,26:17:608:26:928:-70.894,0,-42.1077	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/1:16:9,7:9:320:7:252:-18.2042,0,-24.3259	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6381	0/0:107:107,0:107:3797:0:0:0,-32.2102,-341.929	0/1:71:48,23:48:1724:23:816:-52.3862,0,-134.07	0/1:77:35,42:35:1235:42:1465:-108.307,0,-88.2741	0/1:74:36,38:36:1283:38:1344:-98.4909,0,-93.4964	0/1:101:48,53:48:1720:53:1888:-139.77,0,-124.681	0/0:15:14,1:14:500:1:36:0,-0.917175,-41.7379	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.108	0/0:46:46,0:46:1618:0:0:0,-13.8474,-145.905	0/0:157:157,0:157:5587:0:0:0,-47.2617,-502.956	0/1:12:5,7:5:176:7:244:-18.5749,0,-12.5727	0/1:126:87,39:87:3107:39:1384:-86.9281,0,-241.927	0/1:97:54,43:54:1936:43:1505:-106.096,0,-145.316	0/0:73:72,0:72:2564:0:0:0,-21.6742,-230.651	0/1:391:206,185:206:7333:185:6490:-466.279,0,-542.32	0/0:900:892,7:892:31829:7:252:0,-247.957,-2840.47	0/0:252:252,0:252:8967:0:0:0,-75.8596,-807.012	0/0:759:759,0:759:26982:0:0:0,-228.482,-2427.62	0/0:660:659,0:659:23440:0:0:0,-198.379,-2108.66	0/0:128:128,0:128:4541:0:0:0,-38.5318,-408.86	0/0:102:101,0:101:3598:0:0:0,-30.404,-323.667	0/0:232:232,0:232:8283:0:0:0,-69.839,-745.477	0/1:189:105,84:105:3735:84:3004:-213.669,0,-279.458	0/1:80:47,33:47:1668:33:1164:-80.9784,0,-126.325	0/0:132:132,0:132:4727:0:0:0,-39.736,-425.588	0/1:74:47,27:47:1675:27:960:-64.4308,0,-128.76	0/1:37:25,12:25:872:12:411:-26.1798,0,-67.6555	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/0:78:77,1:77:2739:1:36:0,-19.8821,-243.155	0/1:86:46,40:46:1635:40:1415:-101.674,0,-121.549	0/1:68:43,25:43:1522:25:858:-57.0294,0,-116.802	0/1:53:25,27:25:883:27:960:-70.6891,0,-63.7743	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:520:328,191:328:11703:191:6780:-453.451,0,-896.458	0/1:81:43,38:43:1523:38:1341:-96.5161,0,-112.979	0/0:68:68,0:68:2411:0:0:0,-20.47,-217.247	0/1:231:120,111:120:4274:111:3936:-284.444,0,-315.301	0/1:83:47,36:47:1672:36:1292:-91.5835,0,-125.782	0/1:30:18,12:18:648:12:428:-29.8255,0,-49.621	0/1:391:231,160:231:8212:160:5653:-391.144,0,-621.395	0/1:425:207,218:207:7395:218:7701:-565.15,0,-537.658	0/0:59:58,1:58:2071:1:36:0,-14.1625,-183.062	0/1:87:44,43:44:1563:43:1536:-112.338,0,-114.771	0/1:324:185,139:185:6613:139:4868:-340.469,0,-497.715	0/1:54:25,29:25:896:29:1013:-75.2234,0,-64.7047	0/1:74:42,32:42:1483:32:1132:-79.8769,0,-111.487	0/1:25:15,10:15:536:10:360:-25.2139,0,-41.0491	0/1:52:41,11:41:1464:11:396:-20.3292,0,-116.402	0/0:95:94,1:94:3355:1:36:0,-24.9996,-298.569	0/1:120:41,79:41:1460:79:2764:-212.856,0,-95.5724	0/1:390:191,199:191:6782:199:7012:-513.187,0,-493	0/1:48:24,24:24:847:24:848:-62.1902,0,-62.0993	0/1:42:23,19:23:824:19:680:-48.8625,0,-61.8401	0/1:295:153,142:153:5480:142:5003:-361.583,0,-404.523	0/0:108:107,0:107:3816:0:0:0,-32.2102,-343.279	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/0:133:133,0:133:4733:0:0:0,-40.037,-426.13	0/0:104:103,1:103:3675:1:36:0,-27.7114,-327.358	0/1:50:24,26:24:855:26:916:-67.7007,0,-62.2187	0/0:55:53,1:53:1891:1:36:0,-13.0258,-166.878	0/1:449:266,183:266:9532:183:6444:-444.624,0,-722.673	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/1:53:36,17:36:1262:17:608:-39.0892,0,-97.9264	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/1:44:20,24:20:711:24:844:-62.9143,0,-51.0703	0/1:52:29,23:29:1040:23:820:-58.4595,0,-78.2608	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/1:100:46,54:46:1635:54:1924:-143.275,0,-117.335	0/1:24:13,11:13:464:11:392:-28.3789,0,-34.8728	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.581	0/0:432:431,1:431:15330:1:36:0,-126.447,-1375.83	0/1:677:309,368:309:10953:368:12999:-965.06,0,-781.879	0/1:56:27,29:27:963:29:1024:-75.5418,0,-70.1283	0/0:41:41,0:41:1409:0:0:0,-12.3422,-127.103	0/0:78:78,0:78:2763:0:0:0,-23.4803,-248.913
chr05	24882271	.	T	A	47524.9	PASS	AB=0.505612;ABP=4.52137;AC=50;AF=0.265957;AN=188;AO=2806;CIGAR=1X;DP=11325;DPB=11325;DPRA=0.967001;EPP=6096.16;EPPR=18493.1;GTI=3;LEN=1;MEANALT=1.07143;MQM=59.7327;MQMR=59.9237;NS=94;NUMALT=1;ODDS=0.994802;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100470;QR=302975;RO=8515;RPL=2806;RPP=6096.16;RPPR=18493.1;RPR=0;RUN=1;SAF=0;SAP=6096.16;SAR=2806;SRF=0;SRP=18493.1;SRR=8515;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:39,17:39:1389:17:612:-38.5394,0,-108.449	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.684	0/1:104:55,49:55:1920:49:1752:-126.654,0,-141.762	0/0:210:210,0:210:7503:0:0:0,-63.2163,-675.291	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.66	0/1:184:81,103:81:2870:103:3662:-274.393,0,-203.106	0/0:139:137,2:137:4830:2:72:0,-35.0064,-426.802	0/1:138:66,72:66:2357:72:2592:-191.942,0,-170.845	0/0:151:151,0:151:5307:0:0:0,-45.4555,-477.759	0/0:163:163,0:163:5792:0:0:0,-49.0679,-521.392	0/0:92:92,0:92:3282:0:0:0,-27.6948,-295.597	0/1:107:50,57:50:1770:57:2037:-151.377,0,-127.369	0/1:156:72,84:72:2584:84:3005:-223.716,0,-185.848	0/1:113:67,46:67:2381:46:1656:-115.31,0,-180.373	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.157	0/1:101:52,49:52:1868:49:1750:-126.67,0,-137.981	0/0:94:94,0:94:3357:0:0:0,-28.2968,-302.345	0/0:96:96,0:96:3418:0:0:0,-28.8989,-307.832	0/1:276:118,158:118:4161:158:5665:-426.87,0,-291.585	0/1:159:79,80:79:2844:80:2861:-209.822,0,-208.329	0/1:103:29,74:29:1044:74:2660:-208.637,0,-63.2669	0/1:134:65,69:65:2324:69:2430:-178.586,0,-169.082	0/0:150:144,6:144:5134:6:216:0,-25.3687,-442.41	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:337:337,0:337:11917:0:0:0,-101.447,-1072.38	0/0:210:209,1:209:7482:1:36:0,-59.618,-669.798	0/1:54:18,36:18:644:36:1296:-100.678,0,-42.035	0/1:266:119,147:119:4190:147:5280:-395.252,0,-297.201	0/1:139:68,71:68:2436:71:2547:-187.61,0,-177.648	0/0:166:166,0:166:5915:0:0:0,-49.971,-532.454	0/1:8:3,5:3:93:5:180:-14.1438,0,-6.26849	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4514	0/0:284:284,0:284:10160:0:0:0,-85.4925,-914.323	0/0:155:155,0:155:5549:0:0:0,-46.6596,-499.488	0/0:148:148,0:148:5304:0:0:0,-44.5524,-477.494	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:177:109,68:109:3841:68:2448:-167.269,0,-292.6	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.721	0/1:101:59,42:59:2097:42:1504:-105.244,0,-158.594	0/1:108:49,58:49:1741:58:2084:-155.255,0,-124.4	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.769	0/0:122:122,0:122:4323:0:0:0,-36.7257,-389.244	0/1:127:75,52:75:2658:52:1864:-129.792,0,-201.04	0/1:155:87,68:87:3064:68:2440:-173.176,0,-229.325	0/1:66:29,37:29:1010:37:1309:-98.224,0,-71.3389	0/0:180:180,0:180:6355:0:0:0,-54.1854,-571.953	0/0:174:174,0:174:6211:0:0:0,-52.3792,-559.083	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:179:108,71:108:3865:71:2556:-176.397,0,-294.045	0/0:73:73,0:73:2579:0:0:0,-21.9752,-232.353	0/1:23:9,14:9:320:14:504:-38.7662,0,-22.2187	0/1:136:58,78:58:2061:78:2808:-211.997,0,-144.818	0/1:84:43,41:43:1544:41:1451:-105.589,0,-113.967	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.751	0/1:16:4,12:4:144:12:432:-34.4038,0,-8.49714	0/0:125:125,0:125:4436:0:0:0,-37.6287,-399.332	0/1:186:89,97:89:3185:97:3473:-256.779,0,-230.88	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:174:92,82:92:3284:82:2940:-212.453,0,-243.399	0/1:205:102,103:102:3600:103:3708:-272.12,0,-262.492	0/1:66:33,33:33:1124:33:1171:-85.8277,0,-81.588	0/1:88:51,37:51:1813:37:1324:-92.9691,0,-136.957	0/0:172:171,1:171:6050:1:36:0,-48.1789,-540.984	0/1:170:62,108:62:2228:108:3876:-297.854,0,-149.523	0/1:71:47,24:47:1643:24:864:-56.6966,0,-125.841	0/1:123:60,63:60:2141:63:2252:-165.917,0,-155.926	0/1:141:64,76:64:2287:76:2736:-203.957,0,-163.587	0/1:32:21,11:21:752:11:392:-25.9871,0,-58.3733	0/0:145:145,0:145:5122:0:0:0,-43.6493,-461.119	0/0:73:73,0:73:2598:0:0:0,-21.9752,-234.065	0/0:315:315,0:315:11253:0:0:0,-94.8244,-1012.63	0/0:156:156,0:156:5554:0:0:0,-46.9607,-499.973	0/1:104:58,46:58:2061:46:1652:-117.612,0,-154.452	0/0:101:101,0:101:3530:0:0:0,-30.404,-317.902	0/1:12:4,8:4:144:8:279:-21.8352,0,-9.70126	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.633	0/1:72:43,29:43:1514:29:1017:-70.1389,0,-114.875	0/0:307:305,2:305:10786:2:72:0,-85.5819,-963.809	0/1:132:61,71:61:2188:71:2548:-189.828,0,-157.45	0/1:97:40,57:40:1436:57:2035:-154.218,0,-100.338	0/0:112:112,0:112:4017:0:0:0,-33.7154,-361.699	0/1:215:111,104:111:3950:104:3701:-268.353,0,-290.598	0/1:47:24,22:24:864:22:788:-57.0375,0,-63.8754	0/0:116:116,0:116:4157:0:0:0,-34.9195,-373.684	0/0:107:107,0:107:3829:0:0:0,-32.2102,-344.615	0/0:142:142,0:142:5055:0:0:0,-42.7463,-455.093	0/1:197:110,87:110:3933:87:3108:-220.357,0,-294.858	0/1:98:29,69:29:1029:69:2465:-192.601,0,-63.4179	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.702	0/0:153:151,1:151:5417:1:36:0,-42.5181,-484.057
chr05	24940615	.	T	A	96292.9	PASS	AB=0.489919;ABP=5.63708;AC=140;AF=0.744681;AN=188;AO=4591;CIGAR=1X;DP=6126;DPB=6126;DPRA=13.1634;EPP=9972.24;EPPR=3329.71;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9394;MQMR=59.9804;NS=94;NUMALT=1;ODDS=3.69461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163594;QR=54179;RO=1532;RPL=4588;RPP=9946.2;RPPR=3329.71;RPR=3;RUN=1;SAF=4588;SAP=9946.2;SAR=3;SRF=1532;SRP=3329.71;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	1/1:95:0,94:0:0:94:3343:-300.729,-28.2968,0	0/1:76:43,33:43:1497:33:1164:-82.151,0,-112.143	1/1:148:2,146:2:72:146:5174:-458.961,-37.7157,0	1/1:48:1,47:1:36:47:1688:-148.609,-10.8512,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:71:34,37:34:1202:37:1324:-98.089,0,-87.1111	1/1:113:0,113:0:0:113:4025:-362.428,-34.0164,0	0/1:44:24,20:24:860:20:716:-51.5224,0,-64.4765	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:45:0,45:0:0:45:1579:-142.399,-13.5464,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	0/1:84:39,45:39:1400:45:1595:-118.553,0,-101.013	0/1:59:28,31:28:1004:31:1104:-81.9093,0,-72.9151	0/1:59:30,29:30:1063:29:1036:-75.7931,0,-78.2201	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	0/1:47:26,21:26:932:21:743:-53.0449,0,-70.0505	1/1:45:0,45:0:0:45:1616:-145.722,-13.5464,0	1/1:33:0,33:0:0:33:1167:-105.336,-9.93399,0	0/1:152:71,80:71:2526:80:2861:-211.997,0,-181.864	0/1:93:48,45:48:1695:45:1616:-117.734,0,-124.84	0/1:97:67,30:67:2338:30:1072:-67.5925,0,-181.207	0/1:35:22,13:22:765:13:444:-29.7342,0,-58.6317	1/1:73:2,71:2:72:71:2552:-223.092,-15.1385,0	1/1:34:0,34:0:0:34:1198:-108.122,-10.235,0	1/1:151:0,151:0:0:151:5392:-485.412,-45.4555,0	1/1:160:0,160:0:0:160:5701:-512.84,-48.1648,0	0/1:32:16,16:16:572:16:572:-42.1805,0,-42.1805	0/1:230:127,103:127:4512:103:3671:-261.301,0,-337.012	0/1:57:31,26:31:1084:26:910:-65.0256,0,-80.7074	1/1:79:0,79:0:0:79:2806:-252.777,-23.7814,0	0/1:7:3,4:3:104:4:140:-10.8374,0,-7.5956	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:162:0,162:0:0:162:5793:-521.483,-48.7669,0	1/1:127:0,127:0:0:127:4499:-405.078,-38.2308,0	1/1:58:0,58:0:0:58:2031:-183.059,-17.4597,0	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:71:28,43:28:974:43:1540:-117.52,0,-66.5976	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:37:19,18:19:658:18:648:-47.5138,0,-48.4031	0/1:49:24,25:24:852:25:896:-66.2099,0,-62.2499	1/1:58:0,58:0:0:58:2056:-185.309,-17.4597,0	1/1:32:1,31:1:36:31:1108:-96.4318,-6.03469,0	0/1:60:26,34:26:932:34:1207:-90.8735,0,-66.1371	0/1:120:65,55:65:2267:55:1972:-141.631,0,-168.167	0/1:75:37,38:37:1311:38:1364:-100.483,0,-95.7136	1/1:93:0,93:0:0:93:3324:-299.377,-27.9958,0	1/1:103:0,103:0:0:103:3680:-331.403,-31.0061,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:117:62,55:62:2191:55:1964:-141.545,0,-162.235	1/1:44:0,44:0:0:44:1573:-141.861,-13.2453,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:93:49,44:49:1721:44:1564:-113.051,0,-127.177	0/1:24:16,8:16:567:8:288:-19.0427,0,-44.136	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:12:3,9:3:108:9:313:-24.8927,0,-6.46281	1/1:38:0,38:0:0:38:1353:-122.069,-11.4391,0	0/1:73:34,39:34:1195:39:1368:-101.428,0,-85.8794	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:153:80,73:80:2822:73:2604:-188.551,0,-208.16	0/1:125:69,56:69:2440:56:1977:-140.575,0,-182.225	0/1:26:16,10:16:572:10:360:-24.9175,0,-43.9866	0/1:65:33,32:33:1180:32:1120:-81.538,0,-86.9411	1/1:123:1,122:1:36:122:4339:-387.087,-33.4284,0	0/1:53:32,21:32:1144:21:756:-52.4126,0,-87.3149	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:67:18,49:18:619:49:1745:-137.135,0,-35.8628	0/1:59:21,38:21:744:38:1364:-105.3,0,-49.5236	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:109:0,109:0:0:109:3893:-350.556,-32.8123,0	1/1:114:0,114:0:0:114:4060:-365.584,-34.3174,0	0/1:24:15,9:15:531:9:316:-21.5541,0,-40.8972	1/1:90:0,90:0:0:90:3220:-290.023,-27.0927,0	0/1:8:2,6:2:72:6:208:-16.6503,0,-4.42848	1/1:103:0,103:0:0:103:3694:-332.662,-31.0061,0	0/1:95:48,47:48:1711:47:1667:-121.718,0,-125.677	1/1:149:0,149:0:0:149:5281:-475.398,-44.8535,0	0/1:81:43,38:43:1523:38:1344:-96.8717,0,-112.979	0/1:43:15,28:15:536:28:991:-76.5592,0,-35.6305	1/1:62:0,62:0:0:62:2192:-197.544,-18.6639,0	0/1:92:34,58:34:1220:58:2069:-158.785,0,-82.412	0/1:51:30,21:30:1076:21:752:-52.6537,0,-81.8003	1/1:64:0,64:0:0:64:2272:-204.737,-19.2659,0	1/1:61:0,60:0:0:60:2152:-193.587,-18.0618,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:66:36,30:36:1244:30:1072:-76.9239,0,-92.3909	0/1:54:38,16:38:1344:16:576:-35.9194,0,-105.005	1/1:89:1,88:1:27:88:3141:-280.201,-24.0919,0	1/1:68:2,66:2:72:66:2364:-206.182,-13.6333,0
chr05	24959848	.	T	C	42762	PASS	AB=0.53548;ABP=44.7686;AC=50;AF=0.274725;AN=182;AO=2068;CIGAR=1X;DP=7362;DPB=7362;DPRA=1.08007;EPP=1939.45;EPPR=4962.74;GTI=1;LEN=1;MEANALT=1.05455;MQM=59.9531;MQMR=59.9945;NS=91;NUMALT=1;ODDS=0.991437;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73141;QR=189333;RO=5290;RPL=1713;RPP=1939.45;RPPR=4957.04;RPR=355;RUN=1;SAF=2068;SAP=4493.62;SAR=0;SRF=5289;SRP=11481.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:16,17:16:576:17:604:-44.7566,0,-42.241	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:147:76,71:76:2728:71:2519:-182.71,0,-201.511	0/0:194:194,0:194:6946:0:0:0,-58.3998,-625.204	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:81:44,37:44:1571:37:1301:-93.0064,0,-117.297	0/0:117:117,0:117:4179:0:0:0,-35.2205,-376.292	0/1:93:42,51:42:1500:51:1812:-135.365,0,-107.296	0/0:90:90,0:90:3210:0:0:0,-27.0927,-289.122	0/0:41:41,0:41:1467:0:0:0,-12.3422,-132.325	0/0:75:75,0:75:2658:0:0:0,-22.5772,-239.464	0/1:80:37,43:37:1328:43:1488:-109.968,0,-95.7398	0/1:66:27,39:27:960:39:1366:-103.366,0,-66.8483	0/1:65:32,33:32:1152:33:1167:-85.7695,0,-84.4232	0/0:55:55,0:55:1922:0:0:0,-16.5566,-173.251	0/1:79:42,37:42:1512:37:1297:-93.2465,0,-112.593	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:113:56,57:56:2004:57:2019:-147.966,0,-146.617	0/1:80:50,30:50:1779:30:1071:-72.6192,0,-136.31	0/1:101:25,76:25:896:76:2677:-210.772,0,-50.5563	0/1:76:38,38:38:1364:38:1343:-98.2911,0,-100.182	0/0:87:80,7:80:2868:7:248:0,-3.52541,-235.693	0/0:69:69,0:69:2475:0:0:0,-20.7711,-223.003	0/0:211:209,2:209:7464:2:72:0,-56.6806,-664.967	0/0:142:142,0:142:5088:0:0:0,-42.7463,-458.063	0/1:31:18,13:18:648:13:460:-32.4034,0,-49.32	0/1:167:106,61:106:3799:61:2167:-145.024,0,-291.833	0/1:139:65,72:65:2327:72:2466:-180.593,0,-168.088	0/0:89:89,0:89:3187:0:0:0,-26.7917,-287.053	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:220:220,0:220:7907:0:0:0,-66.2266,-711.65	0/0:124:123,1:123:4394:1:23:0,-35.0283,-393.333	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	.:.:.:.:.:.:.:.	0/1:109:56,53:56:2008:53:1873:-136.034,0,-148.181	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:123:57,66:57:2048:66:2319:-171.945,0,-147.565	0/1:90:40,50:40:1440:50:1788:-134.11,0,-102.805	0/0:75:74,1:74:2643:1:36:0,-18.979,-234.518	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:158:74,84:74:2660:84:2980:-220.87,0,-192.083	0/1:164:76,88:76:2723:88:3110:-230.132,0,-195.943	0/1:105:52,53:52:1872:53:1875:-137.403,0,-137.151	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:106:35,71:35:1256:71:2514:-194.603,0,-81.4361	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	0/1:106:43,63:43:1518:63:2225:-168.604,0,-105.002	0/1:45:20,25:20:720:25:892:-67.0533,0,-51.5824	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/1:89:45,44:45:1616:44:1568:-114.62,0,-118.938	.:.:.:.:.:.:.:.	0/1:225:89,136:89:3183:136:4840:-368.026,0,-218.962	0/1:120:54,65:54:1944:65:2309:-171.888,0,-139.054	0/1:49:21,28:21:748:28:983:-74.0278,0,-52.8948	0/1:80:37,43:37:1320:43:1522:-113.189,0,-95.0195	0/0:132:131,1:131:4696:1:36:0,-36.1377,-419.201	0/1:78:29,49:29:1044:49:1748:-134.123,0,-70.7945	0/1:23:16,7:16:558:7:252:-16.1053,0,-43.6228	0/1:48:21,26:21:741:26:912:-67.888,0,-52.5037	0/1:95:37,58:37:1314:58:2076:-158.513,0,-89.9624	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:106:106,0:106:3790:0:0:0,-31.9092,-341.297	0/0:126:126,0:126:4532:0:0:0,-37.9298,-408.045	0/1:94:42,52:42:1500:52:1830:-136.683,0,-106.998	0/0:61:59,2:59:2104:2:72:0,-11.5261,-182.793	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/1:96:40,56:40:1428:56:1979:-149.485,0,-99.7285	0/0:67:66,1:66:2359:1:36:0,-16.5707,-208.97	0/1:82:42,40:42:1503:40:1431:-104.403,0,-110.879	0/1:67:31,36:31:1108:36:1288:-96.0546,0,-79.862	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.486	0/1:127:62,65:62:2210:65:2293:-168.4,0,-160.933	0/1:45:23,22:23:824:22:777:-56.7056,0,-60.937	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/0:56:56,0:56:1986:0:0:0,-16.8577,-179.011	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:50:23,27:23:804:27:960:-71.6648,0,-57.6251	0/1:64:22,42:22:792:42:1493:-115.398,0,-52.3398	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946	0/0:126:126,0:126:4528:0:0:0,-37.9298,-407.685
chr05	24960209	.	A	G	149631	PASS	AB=0.487846;ABP=9.08042;AC=140;AF=0.744681;AN=188;AO=7029;CIGAR=1X;DP=9472;DPB=9472;DPRA=0;EPP=14903.7;EPPR=5165.4;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9898;MQMR=59.9836;NS=94;NUMALT=1;ODDS=5.85735;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251184;QR=87168;RO=2437;RPL=6987;RPP=14903.7;RPPR=5165.4;RPR=42;RUN=1;SAF=0;SAP=15266.3;SAR=7029;SRF=0;SRP=5294.89;SRR=2437;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:30,25:30:1076:25:896:-64.4037,0,-80.5962	1/1:148:0,148:0:0:148:5299:-477.044,-44.5524,0	0/1:187:97,90:97:3469:90:3228:-234.448,0,-256.128	1/1:366:1,365:1:36:365:13057:-1171.3,-106.579,0	1/1:46:0,46:0:0:46:1630:-146.987,-13.8474,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	0/1:115:54,61:54:1932:61:2158:-159.865,0,-139.538	1/1:152:0,151:0:0:151:5398:-485.67,-45.4555,0	0/1:145:76,69:76:2728:69:2478:-179.624,0,-202.113	1/1:96:0,96:0:0:96:3425:-308.463,-28.8989,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	0/1:65:39,26:39:1392:26:927:-64.1804,0,-106.012	0/1:48:25,22:25:885:22:779:-56.0674,0,-65.6026	0/1:49:18,31:18:648:31:1093:-83.9272,0,-43.9014	1/1:47:1,46:1:36:46:1652:-145.37,-10.5501,0	0/1:44:21,23:21:752:23:824:-61.238,0,-54.7609	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:42:0,42:0:0:42:1505:-135.744,-12.6433,0	0/1:223:117,106:117:4164:106:3745:-270.119,0,-307.813	0/1:145:61,84:61:2188:84:2987:-225.411,0,-153.536	0/1:200:144,55:144:5164:55:1964:-116.898,0,-404.764	0/1:98:38,60:38:1364:60:2148:-164.087,0,-93.5598	1/1:120:7,113:7:244:113:4031:-340.68,-13.8242,0	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	1/1:295:0,295:0:0:295:10554:-949.772,-88.8039,0	1/1:228:1,227:1:36:227:8110:-726.317,-65.0366,0	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	0/1:409:179,230:179:6364:230:8242:-618.668,0,-448.278	0/1:89:43,46:43:1540:46:1630:-120.196,0,-112.101	1/1:137:0,137:0:0:137:4903:-441.421,-41.2411,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:198:0,197:0:0:197:7039:-633.21,-59.3029,0	1/1:169:0,169:0:0:169:6026:-542.445,-50.8741,0	1/1:47:0,47:0:0:47:1691:-152.477,-14.1484,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:194:100,94:100:3554:94:3372:-245.296,0,-261.667	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	0/1:134:74,60:74:2652:60:2148:-153.249,0,-198.588	0/1:44:20,24:20:712:24:856:-64.1158,0,-51.1613	1/1:61:1,60:1:36:60:2151:-190.258,-14.7646,0	1/1:96:1,95:1:36:95:3386:-301.357,-25.3006,0	0/1:114:59,55:59:2112:55:1972:-143.437,0,-156.032	0/1:188:100,88:100:3580:88:3131:-225.421,0,-265.814	0/1:113:57,56:57:2033:56:2001:-146.346,0,-149.224	1/1:156:1,155:1:36:155:5548:-495.844,-43.3624,0	1/1:194:0,194:0:0:194:6958:-626.282,-58.3998,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:127:58,69:58:2080:69:2463:-183.693,0,-149.239	1/1:40:0,40:0:0:40:1412:-127.375,-12.0412,0	0/1:38:17,21:17:600:21:756:-56.9281,0,-42.8901	0/1:108:55,53:55:1976:53:1900:-138.767,0,-145.603	0/1:58:27,31:27:968:31:1112:-82.9316,0,-69.9776	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:31:21,10:21:756:10:356:-23.0493,0,-59.0353	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	0/1:83:37,46:37:1332:46:1652:-123.983,0,-95.1969	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:249:143,106:143:5109:106:3764:-264.004,0,-384.996	0/1:170:80,90:80:2861:90:3203:-237.317,0,-206.551	0/1:61:26,35:26:936:35:1260:-95.3427,0,-66.1966	0/1:84:33,51:33:1188:51:1824:-139.155,0,-81.9421	1/1:150:0,150:0:0:150:5384:-484.463,-45.1545,0	0/1:150:94,55:94:3361:55:1961:-131.698,0,-257.64	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:89:38,51:38:1368:51:1820:-137.29,0,-96.6292	0/1:81:48,33:48:1728:33:1180:-82.1246,0,-131.422	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	1/1:144:0,144:0:0:144:5129:-461.751,-43.3483,0	1/1:97:0,97:0:0:97:3467:-312.242,-29.1999,0	1/1:225:0,225:0:0:225:8023:-722.09,-67.7318,0	1/1:179:0,179:0:0:179:6394:-575.548,-53.8844,0	0/1:140:68,72:68:2409:72:2580:-190.305,0,-174.921	1/1:102:0,102:0:0:102:3611:-325.194,-30.7051,0	0/1:15:11,4:11:396:4:140:-8.42913,0,-31.4673	1/1:112:0,111:0:0:111:3931:-353.731,-33.4143,0	0/1:100:55,45:55:1964:45:1616:-115.627,0,-146.932	1/1:233:3,230:3:108:230:8222:-729.916,-60.0648,0	0/1:80:36,44:36:1296:44:1580:-118.409,0,-92.8615	0/1:56:26,30:26:936:30:1080:-80.6556,0,-67.7018	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	0/1:123:66,57:66:2376:57:2029:-145.854,0,-177.071	0/1:34:20,14:20:703:14:504:-35.4631,0,-53.3585	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:56:0,56:0:0:56:1992:-179.551,-16.8577,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:48:22,26:22:788:26:936:-70.11,0,-56.7954	0/1:62:42,20:42:1508:20:716:-46.1039,0,-117.351	1/1:112:1,111:1:36:111:3965:-353.442,-30.1171,0	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0
chr05	25029373	.	T	C	215053	PASS	AB=0.485929;ABP=15.8436;AC=137;AF=0.728723;AN=188;AO=10340;CIGAR=1X;DP=14192;DPB=14192;DPRA=0;EPP=22403.9;EPPR=8272.16;GTI=1;LEN=1;MEANALT=1.08511;MQM=59.975;MQMR=59.9969;NS=94;NUMALT=1;ODDS=2.84534;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=368211;QR=137369;RO=3844;RPL=6;RPP=22403.9;RPPR=8272.16;RPR=10334;RUN=1;SAF=10340;SAP=22456;SAR=0;SRF=3844;SRP=8350.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:120:68,52:68:2436:52:1864:-131.911,0,-183.372	1/1:108:1,107:1:36:107:3824:-340.759,-28.913,0	0/1:280:156,124:156:5588:124:4433:-314.662,0,-418.754	1/1:319:0,319:0:0:319:11309:-1017.7,-96.0286,0	1/1:113:1,112:1:36:112:3966:-353.536,-30.4181,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:142:78,64:78:2764:64:2280:-162.716,0,-206.254	1/1:270:0,270:0:0:270:9658:-869.17,-81.2781,0	0/1:190:109,81:109:3883:81:2873:-201.612,0,-292.467	1/1:107:0,107:0:0:107:3791:-341.389,-32.2102,0	1/1:98:0,98:0:0:98:3495:-314.761,-29.5009,0	1/1:134:0,134:0:0:134:4792:-431.437,-40.338,0	0/1:126:62,64:62:2204:64:2295:-168.881,0,-160.696	0/1:92:49,42:49:1760:42:1487:-106.37,0,-130.93	0/1:92:45,47:45:1608:47:1688:-124.512,0,-117.315	1/1:87:0,87:0:0:87:3102:-279.407,-26.1896,0	0/1:49:26,23:26:919:23:824:-59.7328,0,-68.2757	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:51:0,51:0:0:51:1810:-163.18,-15.3525,0	0/1:232:123,108:123:4377:108:3872:-278.777,0,-324.207	0/1:246:117,129:117:4173:129:4559:-336.426,0,-301.698	0/1:183:145,38:145:5183:38:1348:-66.5318,0,-411.522	0/1:143:66,77:66:2347:77:2743:-204.065,0,-168.442	0/1:125:16,108:16:572:108:3847:-308.739,0,-14.126	1/1:157:0,157:0:0:157:5623:-506.19,-47.2617,0	1/1:368:2,366:2:72:366:13027:-1165.4,-103.942,0	1/1:437:0,437:0:0:437:15519:-1396.42,-131.55,0	0/1:50:19,31:19:684:31:1087:-83.0869,0,-46.8388	0/1:427:202,225:202:7203:225:8013:-592.655,0,-519.788	0/1:133:59,74:59:2120:74:2642:-197.989,0,-151.027	1/1:134:0,133:0:0:133:4720:-424.759,-40.037,0	0/1:17:6,11:6:212:11:392:-30.5025,0,-14.3073	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:28:0,28:0:0:28:992:-89.5944,-8.42884,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:231:0,231:0:0:231:8193:-737.391,-69.5379,0	1/1:169:0,169:0:0:169:6007:-540.738,-50.8741,0	1/1:61:0,61:0:0:61:2165:-195.116,-18.3628,0	0/1:15:10,5:10:360:5:167:-10.843,0,-28.2289	0/1:149:80,69:80:2868:69:2444:-175.36,0,-213.503	1/1:57:0,57:0:0:57:2019:-181.983,-17.1587,0	0/1:228:117,111:117:4171:111:3945:-286.608,0,-306.939	0/1:80:44,36:44:1576:36:1292:-92.5014,0,-118.049	1/1:69:0,69:0:0:69:2467:-222.278,-20.7711,0	1/1:156:1,155:1:36:155:5503:-491.8,-43.3624,0	0/1:232:115,117:115:4110:117:4168:-305.466,0,-300.245	0/1:358:181,177:181:6486:177:6309:-460.135,0,-476.054	0/1:168:79,89:79:2832:89:3170:-234.947,0,-204.545	1/1:281:0,281:0:0:281:10034:-902.998,-84.5894,0	1/1:305:0,304:0:0:304:10835:-974.697,-91.5131,0	0/1:47:19,28:19:680:28:996:-75.8065,0,-47.3808	0/1:257:120,137:120:4300:137:4872:-361.269,0,-309.812	1/1:78:0,78:0:0:78:2757:-248.362,-23.4803,0	0/1:18:16,2:16:568:2:68:-1.03917,0,-46.0333	0/1:251:126,124:126:4498:124:4373:-318.13,0,-329.371	0/1:103:64,39:64:2280:39:1374:-92.951,0,-174.456	0/1:37:11,26:11:392:26:936:-73.4214,0,-24.4819	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:129:1,128:1:36:128:4524:-403.105,-35.2346,0	0/1:147:65,82:65:2319:82:2923:-219.054,0,-164.718	0/1:31:11,20:11:388:20:720:-55.7968,0,-25.9254	0/1:325:158,167:158:5655:167:5973:-439.842,0,-411.235	0/1:303:157,146:157:5615:146:5202:-377.108,0,-414.26	0/1:76:44,32:44:1571:32:1144:-80.3912,0,-118.803	0/1:172:79,93:79:2824:93:3327:-247.87,0,-202.622	1/1:205:3,202:3:108:202:7194:-637.434,-51.636,0	0/1:231:170,61:170:6108:61:2170:-126.028,0,-480.28	0/1:57:22,35:22:788:35:1256:-96.1866,0,-54.0861	0/1:152:79,73:79:2828:73:2616:-189.93,0,-209.002	0/1:79:40,39:40:1436:39:1400:-102.518,0,-105.756	0/1:45:23,22:23:816:22:775:-56.5248,0,-60.2154	1/1:201:1,200:1:36:200:7111:-636.455,-56.9088,0	1/1:127:0,127:0:0:127:4536:-408.408,-38.2308,0	1/1:206:0,206:0:0:206:7309:-657.865,-62.0122,0	1/1:389:0,389:0:0:389:13892:-1250.05,-117.101,0	0/1:234:118,116:118:4205:116:4142:-302.522,0,-308.19	1/1:170:0,170:0:0:170:6083:-547.572,-51.1751,0	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.0815	1/1:208:0,208:0:0:208:7421:-667.936,-62.6142,0	0/1:275:125,149:125:4471:149:5305:-394.744,0,-319.717	1/1:378:0,378:0:0:378:13444:-1209.73,-113.789,0	0/1:79:40,39:40:1436:39:1392:-101.798,0,-105.756	0/1:152:88,64:88:3148:64:2286:-160.22,0,-237.789	1/1:92:0,91:0:0:91:3247:-292.092,-27.3937,0	0/1:176:84,92:84:2995:92:3278:-242.258,0,-216.801	0/1:40:26,14:26:924:14:500:-33.295,0,-71.4365	1/1:88:0,88:0:0:88:3133:-282.195,-26.4906,0	1/1:101:0,101:0:0:101:3597:-323.936,-30.404,0	1/1:105:1,104:1:36:104:3695:-329.156,-28.0099,0	0/1:170:91,79:91:3252:79:2787:-199.895,0,-241.726	0/1:89:60,29:60:2140:29:1008:-64.2386,0,-166.076	1/1:145:0,145:0:0:145:5187:-466.969,-43.6494,0	1/1:148:2,146:2:72:146:5201:-461.393,-37.7157,0
chr05	25029436	.	GGA	AGA,AGT	256846	PASS	AB=0.455159,0.54243;ABP=111.676,100.306;AC=137,51;AF=0.728723,0.271277;AN=188;AO=8831,3414;CIGAR=1X2M,1X1M1X;DP=12278;DPB=12278;DPRA=0,1.19191;EPP=19179.3,7416.42;EPPR=29.068;GTI=1;LEN=1,3;MEANALT=1.84043,2.2459;MQM=59.96,59.6008;MQMR=60;NS=94;NUMALT=2;ODDS=5.26075;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=313245,117471;QR=418;RO=12;RPL=0,0;RPP=19179.3,7416.42;RPPR=29.068;RPR=8831,3414;RUN=1,1;SAF=0,0;SAP=19179.3,7416.42;SAR=8831,3414;SRF=0;SRP=29.068;SRR=12;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:88:0,36,52:0:0:36,52:1258,1783:-247.26,-144.925,-134.088,-102.681,0,-87.0276	1/1:222:0,222,0:0:0:222,0:7859,0:-707.344,-66.8287,0,-707.344,-66.8287,-707.344	1/2:136:0,68,67:0:0:68,67:2423,2302:-384.403,-186.897,-166.427,-197.496,0,-177.327	1/1:287:0,287,0:0:0:287,0:10191,0:-917.038,-86.3956,0,-917.038,-86.3956,-917.038	1/1:81:0,81,0:0:0:81,0:2900,0:-261.228,-24.3834,0,-261.228,-24.3834,-261.228	1/1:68:1,66,1:1:28:66,1:2353,36:-209.188,-17.6892,0,-206.551,-16.8906,-208.468	1/2:106:0,43,63:0:0:43,63:1513,2159:-298.767,-175.603,-162.658,-123.512,0,-104.548	1/1:236:0,233,2:0:0:233,2:8266,72:-743.596,-70.14,0,-737.721,-64.2652,-737.119	1/2:166:0,74,90:0:0:74,90:2616,3102:-465.074,-252.012,-229.736,-213.134,0,-186.041	1/1:148:0,148,0:0:0:148,0:5243,0:-472.008,-44.5524,0,-472.008,-44.5524,-472.008	1/1:71:0,71,0:0:0:71,0:2516,0:-226.691,-21.3731,0,-226.691,-21.3731,-226.691	1/1:89:0,89,0:0:0:89,0:3149,0:-283.628,-26.7917,0,-283.628,-26.7917,-283.628	1/2:106:0,41,65:0:0:41,65:1460,2213:-298.58,-179.85,-167.508,-119.08,0,-99.513	1/2:107:0,50,57:0:0:50,57:1792,1994:-308.698,-162.541,-147.49,-146.511,0,-129.352	1/2:113:0,51,62:0:0:51,62:1815,2177:-325.451,-177.527,-162.174,-148.278,0,-129.614	1/1:79:0,79,0:0:0:79,0:2812,0:-253.318,-23.7814,0,-253.318,-23.7814,-253.318	1/2:89:0,49,40:0:0:49,40:1740,1343:-250.777,-108.988,-94.237,-142.134,0,-130.093	1/1:105:0,104,0:0:0:104,0:3696,0:-332.592,-31.3071,0,-332.592,-31.3071,-332.592	1/1:65:0,65,0:0:0:65,0:2324,0:-209.42,-19.567,0,-209.42,-19.567,-209.42	1/2:241:0,136,105:0:0:136,105:4871,3629:-692.451,-295.2,-254.26,-397.602,0,-365.994	1/2:240:0,109,131:0:0:109,131:3866,4576:-687.466,-372.494,-339.682,-315.324,0,-275.889	1/2:186:0,53,133:0:0:53,133:1891,4598:-528.092,-373.933,-357.978,-154.513,0,-114.476	1/2:190:0,87,102:0:0:87,102:3101,3513:-538.002,-285.226,-259.036,-252.767,0,-222.062	1/1:158:0,147,11:0:0:147,11:5195,376:-467.346,-44.2514,0,-436.832,-13.3948,-433.521	1/1:94:0,94,0:0:0:94,0:3339,0:-300.725,-28.2968,0,-300.725,-28.2968,-300.725	1/1:404:1,400,3:1:36:400,3:14229,106:-1276.78,-117.473,0,-1268.45,-111.785,-1270.49	1/1:246:0,244,2:0:0:244,2:8677,41:-780.716,-73.4513,0,-777.629,-70.1585,-777.027	1/2:52:0,18,34:0:0:18,34:648,1163:-147.61,-94.7299,-89.3113,-53.2333,0,-42.9983	1/2:343:0,156,186:0:0:156,186:5577,6466:-980.493,-525.756,-478.795,-454.81,0,-398.818	1/2:226:0,87,139:0:0:87,139:3060,4751:-634.894,-385.804,-359.614,-249.438,0,-207.595	1/1:212:3,208,1:3:108:208,1:7419,25:-657.71,-53.7196,0,-656.665,-60.6929,-665.176	1/2:20:0,12,8:0:0:12,8:432,283:-58.657,-23.4043,-19.7919,-35.6088,0,-33.2006	1/1:28:0,28,0:0:0:28,0:985,0:-88.9615,-8.42884,0,-88.9615,-8.42884,-88.9615	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:17:0,17,0:0:0:17,0:593,0:-53.6947,-5.11751,0,-53.6947,-5.11751,-53.6947	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:270:1,267,0:1:36:267,0:9442,0:-846.15,-77.4376,0,-846.451,-80.375,-849.388	1/1:286:0,286,0:0:0:286,0:10148,0:-913.252,-86.0946,0,-913.252,-86.0946,-913.252	1/1:84:0,84,0:0:0:84,0:2948,0:-265.553,-25.2865,0,-265.553,-25.2865,-265.553	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:193:0,88,105:0:0:88,105:3137,3531:-542.107,-286.389,-259.898,-256.065,0,-224.457	1/1:86:0,85,0:0:0:85,0:3054,0:-274.725,-25.5876,0,-274.725,-25.5876,-274.725	1/2:215:0,106,109:0:0:106,109:3754,3737:-609.4,-303.598,-271.689,-306.15,0,-273.338	1/2:119:0,63,56:0:0:63,56:2247,1928:-340.106,-156.928,-137.963,-183.528,0,-166.67	1/1:99:0,99,0:0:0:99,0:3490,0:-314.309,-29.802,0,-314.309,-29.802,-314.309	1/1:88:0,88,0:0:0:88,0:3140,0:-282.825,-26.4906,0,-282.825,-26.4906,-282.825	1/2:118:0,68,50:0:0:68,50:2410,1729:-337.154,-140.817,-120.347,-196.686,0,-181.635	1/2:100:0,54,46:0:0:54,46:1904,1585:-284.079,-129.049,-112.793,-155.378,0,-141.531	1/2:155:0,70,84:0:0:70,84:2481,2896:-437.372,-235.256,-214.184,-202.155,0,-176.869	1/1:194:0,194,0:0:0:194,0:6884,0:-619.63,-58.3998,0,-619.63,-58.3998,-619.63	1/1:118:0,116,1:0:0:116,1:4139,34:-372.37,-34.9195,0,-369.623,-32.1583,-369.322	1/2:13:0,2,11:0:0:2,11:72,394:-38.3638,-32.4887,-31.8866,-6.23466,0,-2.92333	1/2:142:0,51,91:0:0:51,91:1818,3102:-400.169,-251.981,-236.628,-148.539,0,-121.145	1/1:55:0,55,0:0:0:55,0:1936,0:-174.514,-16.5567,0,-174.514,-16.5567,-174.514	1/2:61:0,25,36:0:0:25,36:892,1203:-170.445,-97.7185,-90.1927,-73.0739,0,-62.2369	1/2:82:0,33,49:0:0:33,49:1171,1691:-233.114,-137.702,-12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chr05	25111045	.	C	T	19758.9	PASS	AB=0.509644;ABP=4.8951;AC=50;AF=0.265957;AN=188;AO=1190;CIGAR=1X;DP=4316;DPB=4316;DPRA=1.03263;EPP=2587.06;EPPR=6780.18;GTI=0;LEN=1;MEANALT=1.01961;MQM=59.9529;MQMR=59.992;NS=94;NUMALT=1;ODDS=0.850976;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42374;QR=109591;RO=3125;RPL=1190;RPP=2587.06;RPPR=6780.18;RPR=0;RUN=1;SAF=1190;SAP=2587.06;SAR=0;SRF=3125;SRP=6788.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:61:61,0:61:2154:0:0:0,-18.3628,-194.127	0/1:56:33,23:33:1158:23:813:-56.6314,0,-87.6674	0/0:98:98,0:98:3415:0:0:0,-29.5009,-307.566	0/0:30:30,0:30:1052:0:0:0,-9.0309,-94.9877	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.9615	0/1:56:28,28:28:990:28:1000:-73.4577,0,-72.555	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:37:16,21:16:563:21:748:-56.5072,0,-39.8611	0/0:21:21,0:21:716:0:0:0,-6.32163,-64.7548	0/0:39:39,0:39:1358:0:0:0,-11.7402,-122.517	0/0:37:37,0:37:1270:0:0:0,-11.1381,-114.596	0/1:28:12,16:12:415:16:576:-43.7461,0,-29.2514	0/1:48:26,22:26:920:22:780:-56.0736,0,-68.6676	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.666	0/1:40:18,22:18:625:22:784:-58.8427,0,-44.5313	0/0:30:30,0:30:1060:0:0:0,-9.0309,-95.7113	0/0:17:17,0:17:581:0:0:0,-5.11751,-52.6105	0/1:129:70,59:70:2446:59:2116:-151.876,0,-181.558	0/1:46:25,21:25:896:21:752:-54.1589,0,-67.113	0/1:66:24,42:24:847:42:1486:-114.166,0,-56.6807	0/1:71:31,40:31:1100:40:1418:-106.543,0,-77.9372	0/0:43:42,1:42:1474:1:36:0,-9.34601,-129.355	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.078	0/0:139:139,0:139:4908:0:0:0,-41.8432,-441.874	0/0:74:74,0:74:2616:0:0:0,-22.2762,-235.687	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	0/1:120:61,59:61:2176:59:2107:-153.775,0,-159.983	0/1:66:32,34:32:1110:34:1207:-89.0673,0,-80.3374	0/0:70:70,0:70:2446:0:0:0,-21.0721,-220.365	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:24:24,0:24:819:0:0:0,-7.22472,-74.0209	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:92:92,0:92:3176:0:0:0,-27.6948,-286.066	0/0:80:80,0:80:2801:0:0:0,-24.0824,-252.329	0/0:30:30,0:30:1043:0:0:0,-9.0309,-94.1788	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:66:32,34:32:1116:34:1224:-90.5991,0,-80.8766	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/1:83:43,40:43:1502:40:1432:-104.192,0,-110.483	0/1:17:6,11:6:203:11:392:-30.5025,0,-13.4837	0/0:23:23,0:23:807:0:0:0,-6.92369,-72.9492	0/0:53:53,0:53:1808:0:0:0,-15.9546,-162.996	0/1:55:29,25:29:1016:25:896:-64.3404,0,-75.1338	0/1:73:32,41:32:1128:41:1463:-109.99,0,-79.8531	0/1:51:32,19:32:1144:19:684:-46.5378,0,-87.917	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/0:102:102,0:102:3557:0:0:0,-30.7051,-320.34	0/1:20:10,10:10:343:10:337:-24.6341,0,-25.18	0/1:91:46,45:46:1623:45:1584:-115.439,0,-118.964	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:55:32,23:32:1125:23:828:-58.2875,0,-84.9994	0/1:21:11,10:11:387:10:360:-26.4227,0,-28.8443	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.87	0/1:74:43,31:43:1441:31:1097:-76.7627,0,-107.7	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:89:48,41:48:1692:41:1438:-102.92,0,-125.772	0/1:94:45,49:45:1581:49:1744:-128.948,0,-114.282	0/1:36:22,14:22:763:14:500:-34.4991,0,-58.1515	0/1:45:25,20:25:885:20:720:-51.5824,0,-66.4156	0/0:49:49,0:49:1714:0:0:0,-14.7505,-154.541	0/1:109:34,75:34:1204:75:2692:-209.684,0,-75.8536	0/1:23:10,13:10:351:13:459:-34.7204,0,-25.003	0/1:50:25,25:25:892:25:891:-65.4573,0,-65.5482	0/1:47:24,23:24:799:23:809:-58.9808,0,-58.0661	0/1:15:7,8:7:244:8:288:-21.752,0,-17.784	0/0:43:43,0:43:1502:0:0:0,-12.9443,-135.472	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:102:102,0:102:3611:0:0:0,-30.7051,-325.196	0/0:74:74,0:74:2606:0:0:0,-22.2762,-234.789	0/1:86:25,61:25:865:61:2164:-169.136,0,-52.2744	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:41:41,0:41:1448:0:0:0,-12.3422,-130.616	0/1:47:22,25:22:776:25:892:-66.4513,0,-56.0137	0/0:83:83,0:83:2970:0:0:0,-24.9855,-267.532	0/1:53:33,20:33:1158:20:720:-49.1742,0,-88.5704	0/1:26:13,13:13:442:13:468:-34.6329,0,-32.2775	0/0:25:25,0:25:847:0:0:0,-7.52575,-76.5387	0/1:42:19,23:19:654:23:808:-60.3969,0,-46.5368	0/1:29:15,14:15:527:14:504:-36.9505,0,-39.0303	0/0:33:33,0:33:1110:0:0:0,-9.93399,-100.196	0/0:32:32,0:32:1121:0:0:0,-9.63296,-101.196	0/0:29:29,0:29:993:0:0:0,-8.72987,-89.6769	0/1:81:42,39:42:1464:39:1357:-98.04,0,-107.668	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:38:38,0:38:1344:0:0:0,-11.4391,-121.26	0/0:30:30,0:30:1059:0:0:0,-9.0309,-95.6204
chr05	25111064	.	T	C	18443.6	PASS	AB=0.504437;ABP=3.39565;AC=50;AF=0.265957;AN=188;AO=1140;CIGAR=1X;DP=4172;DPB=4172;DPRA=1.06644;EPP=2478.49;EPPR=6584.74;GTI=0;LEN=1;MEANALT=1.01923;MQM=59.9465;MQMR=59.9941;NS=94;NUMALT=1;ODDS=2.82223;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40193;QR=107956;RO=3031;RPL=1140;RPP=2478.49;RPPR=6584.74;RPR=0;RUN=1;SAF=1140;SAP=2478.49;SAR=0;SRF=3031;SRP=6584.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:53:32,21:32:1136:21:740:-50.9688,0,-86.5943	0/0:94:94,0:94:3355:0:0:0,-28.2968,-302.167	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:56:30,26:30:1076:26:917:-65.9869,0,-80.2952	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:35:16,19:16:576:19:656:-48.8261,0,-41.6389	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/0:39:39,0:39:1370:0:0:0,-11.7402,-123.597	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:27:11,16:11:396:16:572:-43.6856,0,-27.8549	0/1:47:27,20:27:941:20:716:-50.6193,0,-70.8533	0/1:16:3,13:3:108:13:450:-36.0116,0,-5.25869	0/0:33:33,0:33:1166:0:0:0,-9.93399,-105.246	0/1:37:17,20:17:612:20:700:-52.1854,0,-44.2753	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:127:71,55:71:2529:55:1959:-138.295,0,-189.571	0/1:46:25,21:25:891:21:739:-52.985,0,-66.6614	0/1:62:23,39:23:820:39:1376:-105.473,0,-55.4587	0/1:67:30,37:30:1072:37:1324:-99.2931,0,-76.6234	0/0:42:41,1:41:1464:1:32:0,-9.44395,-128.857	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7172	0/0:138:138,0:138:4936:0:0:0,-41.5421,-444.391	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:12:9,3:9:311:3:108:-6.46281,0,-24.7114	0/1:123:63,60:63:2232:60:2080:-150.44,0,-164.118	0/1:64:31,33:31:1089:33:1168:-86.1613,0,-79.0514	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/1:7:3,4:3:108:4:135:-10.3753,0,-7.96796	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:90:90,0:90:3227:0:0:0,-27.0927,-290.651	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.11	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:65:31,34:31:1107:34:1207:-89.3683,0,-80.3732	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/1:80:43,37:43:1528:37:1312:-94.2993,0,-113.731	0/1:16:5,11:5:176:11:375:-29.2614,0,-11.3685	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:51:51,0:51:1800:0:0:0,-15.3525,-162.279	0/1:52:28,24:28:992:24:864:-62.4244,0,-73.9408	0/1:69:29,40:29:1018:40:1397:-105.254,0,-71.1594	0/1:50:31,19:31:1112:19:676:-46.1165,0,-85.3398	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:98:98,0:98:3478:0:0:0,-29.5009,-313.233	0/1:20:10,10:10:356:10:356:-26.3606,0,-26.3606	0/1:84:42,42:42:1508:42:1488:-108.61,0,-110.728	0/0:38:38,0:38:1342:0:0:0,-11.4391,-121.079	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:51:29,22:29:1026:22:771:-54.3578,0,-77.2988	0/1:20:10,10:10:351:10:343:-25.18,0,-25.9061	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:69:39,30:39:1384:30:1059:-74.8494,0,-104.088	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:84:47,37:47:1684:37:1283:-90.4806,0,-126.561	0/1:92:43,49:43:1540:49:1720:-127.388,0,-111.198	0/1:32:20,12:20:707:12:406:-27.2312,0,-54.3216	0/1:44:25,19:25:885:19:680:-48.2838,0,-66.7166	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.29	0/1:104:33,71:33:1166:71:2494:-193.395,0,-73.9385	0/1:21:10,11:10:356:11:392:-29.2984,0,-26.0596	0/1:52:26,26:26:936:26:916:-67.1029,0,-68.9059	0/1:47:24,23:24:820:23:802:-58.349,0,-59.9632	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:97:97,0:97:3435:0:0:0,-29.1999,-309.363	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:83:25,58:25:896:58:2040:-158.887,0,-55.9749	0/0:42:42,0:42:1488:0:0:0,-12.6433,-134.215	0/1:11:5,6:5:176:6:204:-15.382,0,-12.8737	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:47:24,23:24:848:23:812:-59.2525,0,-62.4912	0/0:78:76,2:76:2719:2:68:0,-17.0226,-238.495	0/1:52:33,19:33:1171:19:680:-45.8756,0,-90.0431	0/1:25:12,13:12:424:13:468:-34.9339,0,-30.9707	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:40:19,21:19:667:21:744:-55.2431,0,-48.3134	0/1:27:14,13:14:504:13:464:-33.952,0,-37.5703	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:28:28,0:28:980:0:0:0,-8.42884,-88.5102	0/1:78:42,36:42:1491:36:1288:-92.7432,0,-111.003	0/1:15:6,9:6:207:9:324:-24.9904,0,-14.4514	0/0:37:37,0:37:1304:0:0:0,-11.1381,-117.661	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374
chr05	25140213	.	T	C	17123	PASS	AB=0.610929;ABP=263.159;AC=57;AF=0.306452;AN=186;AO=1591;CIGAR=1X;DP=4311;DPB=4311;DPRA=1.35605;EPP=3457.82;EPPR=5900.73;GTI=4;LEN=1;MEANALT=1.03846;MQM=28.6644;MQMR=40.1856;NS=93;NUMALT=1;ODDS=0.0308248;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56860;QR=97292;RO=2716;RPL=1591;RPP=3457.82;RPPR=5900.73;RPR=0;RUN=1;SAF=0;SAP=3457.82;SAR=1591;SRF=0;SRP=5900.73;SRR=2716;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:11,11:11:392:11:392:-18.9137,0,-26.1603	0/0:41:41,0:41:1438:0:0:0,-12.3422,-121.844	0/1:47:18,29:18:648:29:1028:-52.688,0,-38.2496	0/0:45:45,0:45:1597:0:0:0,-13.5463,-139.129	0/0:13:13,0:13:468:0:0:0,-3.91339,-40.111	0/0:14:14,0:14:500:0:0:0,-4.21442,-42.7641	0/1:86:26,60:26:932:60:2148:-130.84,0,-54.303	0/0:73:73,0:73:2613:0:0:0,-21.9752,-217.337	0/1:53:24,29:24:864:29:1044:-51.1647,0,-56.0574	0/0:50:50,0:50:1777:0:0:0,-15.0515,-153.074	0/0:31:31,0:31:1112:0:0:0,-9.33193,-96.934	0/0:40:40,0:40:1421:0:0:0,-12.0412,-119.124	0/1:29:14,15:14:504:15:531:-25.8762,0,-33.5407	0/1:77:40,37:40:1432:37:1328:-67.976,0,-98.8093	0/1:28:11,17:11:396:17:604:-35.9144,0,-25.9481	0/0:26:26,0:26:936:0:0:0,-7.82678,-80.3908	0/1:46:27,19:27:972:19:684:-29.735,0,-67.6933	0/0:34:34,0:34:1220:0:0:0,-10.235,-101.016	0/0:21:21,0:21:756:0:0:0,-6.32163,-62.937	0/1:42:11,31:11:392:31:1097:-66.9192,0,-21.6128	0/1:42:21,21:21:756:21:748:-39.0364,0,-51.6923	1/1:58:3,55:3:108:55:1976:-140.629,-7.5586,0	0/1:19:8,11:8:288:11:392:-23.0825,0,-19.7451	0/1:47:41,6:41:1476:6:212:-1.48438,0,-112.01	0/0:23:23,0:23:828:0:0:0,-6.92369,-70.2448	0/0:155:152,3:152:5460:3:108:0,-38.1069,-468.348	0/0:70:70,0:70:2504:0:0:0,-21.0721,-214.555	0/1:13:8,5:8:284:5:180:-8.25239,0,-21.0139	0/1:78:21,57:21:756:57:2048:-129.993,0,-43.6758	0/1:124:21,103:21:756:103:3684:-215.906,0,-26.9748	0/0:56:56,0:56:2004:0:0:0,-16.8577,-175.328	1/1:4:0,4:0:0:4:144:-10.1239,-1.20412,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.56353	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.6931	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.5341	0/0:109:109,0:109:3912:0:0:0,-32.8123,-342.157	0/0:107:107,0:107:3844:0:0:0,-32.2102,-329.562	0/0:32:32,0:32:1152:0:0:0,-9.63296,-97.153	1/1:3:0,3:0:0:3:104:-7.58526,-0.90309,0	0/1:50:16,34:16:576:34:1220:-68.3885,0,-34.3877	0/0:14:14,0:14:500:0:0:0,-4.21442,-43.5226	0/1:62:17,45:17:612:45:1600:-91.4407,0,-34.5353	0/1:19:11,8:11:396:8:288:-15.4706,0,-29.2198	0/0:26:26,0:26:932:0:0:0,-7.82678,-81.4166	0/0:52:52,0:52:1868:0:0:0,-15.6536,-164.656	0/1:50:7,42:7:252:42:1504:-81.8679,0,-6.66394	0/1:106:53,53:53:1896:53:1896:-105.974,0,-134.334	0/1:67:31,36:31:1097:36:1292:-73.072,0,-73.2145	0/0:88:88,0:88:3129:0:0:0,-26.4906,-272.121	0/0:52:52,0:52:1868:0:0:0,-15.6536,-165.145	0/1:6:3,3:3:108:3:108:-6.32156,0,-7.44144	0/1:63:14,49:14:500:49:1751:-94.556,0,-23.3203	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.227	1/1:4:0,4:0:0:4:144:-9.46721,-1.20412,0	0/1:52:18,34:18:644:34:1216:-67.3164,0,-39.2799	0/1:4:3,1:3:108:1:36:-1.69864,0,-8.60344	1/1:4:0,4:0:0:4:144:-11.3018,-1.20412,0	0/1:15:5,10:5:180:10:360:-22.2056,0,-11.7507	0/0:35:35,0:35:1260:0:0:0,-10.536,-107.744	0/1:95:36,59:36:1296:59:2099:-124.542,0,-83.2216	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.80756	0/1:83:26,57:26:932:57:2023:-124.498,0,-57.7856	0/1:168:69,99:69:2480:99:3548:-205.41,0,-164.594	0/1:76:25,51:25:900:51:1816:-102.261,0,-54.5439	1/1:28:2,26:2:72:26:928:-60.7497,-1.77371,0	0/0:44:44,0:44:1572:0:0:0,-13.2453,-136.067	0/1:137:22,115:22:788:115:4116:-257.371,0,-28.0874	0/1:11:4,7:4:144:7:252:-14.2004,0,-9.47029	0/1:51:11,39:11:396:39:1392:-74.3554,0,-17.8088	0/1:89:46,43:46:1656:43:1519:-88.0345,0,-119.372	0/1:15:7,8:7:252:8:284:-16.5698,0,-17.6138	0/0:39:39,0:39:1404:0:0:0,-11.7402,-117.58	0/0:27:27,0:27:968:0:0:0,-8.12781,-81.2243	0/0:85:85,0:85:3033:0:0:0,-25.5875,-257.258	0/0:50:50,0:50:1796:0:0:0,-15.0515,-156.614	0/1:97:31,66:31:1112:66:2368:-122.942,0,-65.3581	0/0:20:20,0:20:712:0:0:0,-6.0206,-60.0498	1/1:4:0,4:0:0:4:144:-9.12464,-1.20412,0	0/0:15:15,0:15:536:0:0:0,-4.51545,-46.0412	0/1:73:18,55:18:633:55:1953:-104.885,0,-31.9295	0/0:66:64,0:64:2265:0:0:0,-19.2659,-197.062	0/1:103:44,59:44:1584:59:2120:-122.314,0,-107.423	0/1:39:30,9:30:1080:9:324:-12.0625,0,-82.5539	0/0:31:31,0:31:1116:0:0:0,-9.33193,-97.0447	0/1:41:30,11:30:1080:11:396:-16.3826,0,-81.4535	0/1:30:15,15:15:536:15:536:-25.2889,0,-36.7822	0/0:32:31,1:31:1112:1:36:0,-7.07425,-91.2881	0/0:37:37,0:37:1332:0:0:0,-11.1381,-112.845	0/0:32:32,0:32:1152:0:0:0,-9.63296,-99.2509	0/1:64:42,22:42:1500:22:779:-34.7583,0,-110.242	0/1:15:9,6:9:324:6:216:-11.4498,0,-24.2067	0/0:28:28,0:28:989:0:0:0,-8.42884,-86.4671	0/0:35:35,0:35:1256:0:0:0,-10.536,-109.904
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chr05	25155632	.	T	C	261138	PASS	AB=0.484121;ABP=19.6993;AC=136;AF=0.731183;AN=186;AO=10804;CIGAR=1X;DP=14769;DPB=14769;DPRA=0;EPP=23359.5;EPPR=8539.12;GTI=0;LEN=1;MEANALT=1.13978;MQM=45.9788;MQMR=46.6768;NS=93;NUMALT=1;ODDS=6.23564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=381805;QR=141348;RO=3951;RPL=5487;RPP=8.81885;RPPR=6.26888;RPR=5317;RUN=1;SAF=5499;SAP=10.5747;SAR=5305;SRF=2019;SRP=7.17023;SRR=1932;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:79:49,30:49:1755:30:1058:-60.5344,0,-116.313	1/1:192:1,191:1:32:191:6780:-542.025,-54.5984,0	0/1:224:109,115:109:3895:115:4055:-257.152,0,-244.686	1/1:278:0,278:0:0:278:9821:-825.972,-83.6863,0	1/1:110:0,109:0:0:109:3855:-317.635,-32.8123,0	1/1:103:0,103:0:0:103:3626:-295.015,-31.0061,0	0/1:309:147,162:147:5252:162:5700:-389.323,0,-358.73	1/1:212:4,208:4:144:208:7344:-596.962,-51.076,0	0/1:181:100,81:100:3577:81:2867:-175.677,0,-235.694	1/1:165:0,165:0:0:165:5873:-501.967,-49.67,0	1/1:116:0,116:0:0:116:4054:-342.134,-34.9195,0	1/1:176:0,176:0:0:176:6226:-499.526,-52.9813,0	0/1:170:74,96:74:2643:96:3400:-216.196,0,-161.504	0/1:147:72,75:72:2575:75:2626:-169.161,0,-174.896	0/1:158:83,75:83:2976:75:2641:-176.76,0,-208.449	1/1:141:0,141:0:0:141:4982:-414.742,-42.4452,0	0/1:145:82,63:82:2907:63:2226:-137.104,0,-193.083	1/1:163:0,163:0:0:163:5702:-468.142,-49.0679,0	1/1:112:0,112:0:0:112:3969:-311.906,-33.7154,0	0/1:420:235,184:235:8428:184:6516:-434.712,0,-600.037	0/1:279:132,146:132:4743:146:5198:-345.36,0,-313.607	0/1:99:66,33:66:2367:33:1162:-71.791,0,-176.57	0/1:112:51,61:51:1832:61:2165:-155.277,0,-126.587	1/1:200:9,191:9:324:191:6732:-523.94,-32.8624,0	1/1:139:0,139:0:0:139:4927:-402.973,-41.8432,0	1/1:302:0,301:0:0:301:10576:-912.558,-90.61,0	1/1:131:1,130:1:36:130:4611:-377.599,-36.3113,0	0/1:93:49,44:49:1756:44:1547:-101.883,0,-118.156	0/1:265:114,151:114:4068:151:5353:-381.241,0,-275.37	0/1:131:65,66:65:2332:66:2359:-154.362,0,-157.158	1/1:185:0,185:0:0:185:6511:-556.867,-55.6906,0	0/1:9:8,1:8:284:1:36:-0.889005,0,-22.3279	1/1:19:0,19:0:0:19:680:-56.9864,-5.71957,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:136:-11.4167,-1.20412,0	1/1:4:0,4:0:0:4:144:-12.5947,-1.20412,0	1/1:342:2,340:2:72:340:11996:-1027.25,-96.3157,0	1/1:171:0,171:0:0:171:5992:-497.493,-51.4761,0	1/1:142:0,142:0:0:142:5052:-390.827,-42.7463,0	0/1:6:3,3:3:108:3:108:-6.53993,0,-7.826	0/1:253:119,134:119:4234:134:4766:-310.778,0,-279.77	1/1:109:1,108:1:36:108:3790:-311.189,-29.214,0	0/1:218:109,108:109:3916:108:3815:-240.254,0,-250.936	0/1:196:90,106:90:3204:106:3758:-262.744,0,-217.608	1/1:147:0,147:0:0:147:5193:-435.192,-44.2514,0	1/1:127:0,126:0:0:126:4483:-383.347,-37.9298,0	0/1:177:91,86:91:3264:86:3035:-188.5,0,-210.838	0/1:280:147,133:147:5272:133:4687:-308.097,0,-367.673	0/1:155:68,86:68:2440:86:3036:-209.889,0,-163.146	1/1:189:1,188:1:36:188:6625:-552.291,-53.5956,0	1/1:218:0,218:0:0:218:7771:-666.354,-65.6245,0	0/1:8:3,5:3:108:5:171:-12.1838,0,-6.82903	0/1:220:107,113:107:3828:113:4026:-259.5,0,-246.384	1/1:49:0,49:0:0:49:1756:-154.183,-14.7505,0	0/1:11:3,8:3:108:8:284:-19.7553,0,-4.73672	0/1:212:101,111:101:3620:111:3916:-256.704,0,-238.085	0/1:86:55,31:55:1963:31:1099:-64.8754,0,-146.422	0/1:6:2,4:2:72:4:144:-10.9538,0,-5.03054	0/1:21:14,7:14:504:7:252:-16.1601,0,-37.6805	1/1:132:0,132:0:0:132:4629:-388.515,-39.736,0	0/1:226:116,110:116:4163:110:3891:-256.781,0,-287.801	0/1:11:7,4:7:252:4:144:-10.0023,0,-18.076	0/1:145:91,54:91:3264:54:1907:-121.292,0,-239.956	0/1:244:143,100:143:5123:100:3502:-224.036,0,-368.005	0/1:143:65,78:65:2307:78:2773:-182.723,0,-151.126	0/1:104:56,48:56:1993:48:1698:-109.641,0,-139.856	1/1:229:1,228:1:36:228:8072:-683.941,-65.3376,0	0/1:188:123,65:123:4396:65:2323:-143.844,0,-323.758	0/1:62:29,33:29:1040:33:1179:-78.1613,0,-68.8184	0/1:200:110,90:110:3940:90:3191:-194.274,0,-260.629	0/1:184:84,100:84:3016:100:3530:-246.846,0,-204.99	0/1:20:12,8:12:428:8:275:-18.3134,0,-31.1061	1/1:126:0,126:0:0:126:4474:-360.253,-37.9298,0	1/1:121:0,121:0:0:121:4284:-340.89,-36.4246,0	1/1:278:0,278:0:0:278:9834:-819.002,-83.6863,0	1/1:227:0,226:0:0:226:8001:-676.362,-68.0328,0	0/1:142:86,56:86:3075:56:1981:-116.994,0,-215.421	1/1:141:0,140:0:0:140:4955:-395.809,-42.1442,0	0/1:8:4,4:4:144:4:126:-8.52426,0,-10.9054	1/1:194:1,193:1:36:193:6843:-557.951,-55.2762,0	0/1:266:144,122:144:5143:122:4344:-261.611,0,-347.329	1/1:399:0,397:0:0:397:14083:-1198.87,-119.509,0	0/1:192:87,105:87:3115:105:3694:-255.742,0,-213.517	0/1:161:76,85:76:2710:85:2964:-202.083,0,-181.222	1/1:227:1,226:1:36:226:7977:-677.943,-65.0348,0	0/1:269:128,141:128:4565:141:4944:-338.503,0,-308.433	0/1:81:35,46:35:1239:46:1624:-107.634,0,-77.2971	1/1:171:0,170:0:0:170:5968:-478.833,-51.1751,0	1/1:154:0,154:0:0:154:5413:-434.023,-46.3586,0	1/1:91:0,91:0:0:91:3184:-257.428,-27.3937,0	0/1:152:79,73:79:2840:73:2603:-160.503,0,-195.907	0/1:152:103,49:103:3668:49:1740:-99.3497,0,-268.628	1/1:151:0,151:0:0:151:5319:-449.76,-45.4555,0	1/1:262:3,258:3:108:258:9123:-758.321,-68.8227,0
chr05	25159034	.	A	G	33811.7	PASS	AB=0.55255;ABP=88.137;AC=51;AF=0.271277;AN=188;AO=1967;CIGAR=1X;DP=6760;DPB=6760;DPRA=1.09617;EPP=4274.3;EPPR=10410.9;GTI=2;LEN=1;MEANALT=1;MQM=59.9725;MQMR=59.855;NS=94;NUMALT=1;ODDS=0.579801;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70015;QR=170804;RO=4793;RPL=1967;RPP=4274.3;RPPR=10410.9;RPR=0;RUN=1;SAF=1967;SAP=4274.3;SAR=0;SRF=4793;SRP=10410.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:12,7:12:432:7:244:-16.5799,0,-33.5016	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.803	0/1:102:43,59:43:1532:59:2094:-158.023,0,-107.468	0/0:191:191,0:191:6812:0:0:0,-57.4967,-612.57	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:76:40,36:40:1428:36:1257:-90.552,0,-105.939	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.335	0/1:42:13,29:13:460:29:1032:-80.5497,0,-29.0921	0/0:110:110,0:110:3944:0:0:0,-33.1133,-354.695	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.802	0/1:84:42,42:42:1491:42:1500:-110.008,0,-109.197	0/1:60:28,32:28:975:32:1131:-83.6073,0,-69.997	0/1:74:34,40:34:1215:40:1408:-104.739,0,-87.3795	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.448	0/1:33:21,12:21:752:12:424:-28.5624,0,-58.0364	0/0:33:32,1:32:1144:1:36:0,-6.33571,-99.6712	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.7639	0/1:126:62,64:62:2208:64:2275:-167.082,0,-161.053	0/1:140:65,75:65:2312:75:2652:-196.773,0,-166.195	0/1:68:18,50:18:644:50:1774:-139.472,0,-37.8206	0/1:119:60,59:60:2156:59:2099:-153.357,0,-158.484	0/1:42:36,6:36:1280:6:216:-7.14725,0,-102.86	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:135:135,0:135:4844:0:0:0,-40.639,-436.112	0/0:139:139,0:139:4931:0:0:0,-41.8432,-443.411	0/1:38:21,17:21:752:17:600:-42.8901,0,-56.5671	0/1:275:121,154:121:4301:154:5528:-414.86,0,-304.485	0/1:143:62,81:62:2211:81:2888:-217.11,0,-156.206	0/0:88:88,0:88:3136:0:0:0,-26.4906,-282.467	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3132	0/0:181:181,0:181:6475:0:0:0,-54.4864,-582.71	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.8525	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:87:32,55:32:1148:55:1949:-149.494,0,-77.4402	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0316	0/1:57:17,40:17:612:40:1417:-110.667,0,-38.1245	0/1:60:25,35:25:888:35:1260:-95.6437,0,-62.1772	0/0:55:55,0:55:1947:0:0:0,-16.5566,-175.441	0/0:72:72,0:72:2522:0:0:0,-21.6742,-227.231	0/1:62:30,32:30:1076:32:1148:-84.966,0,-78.489	0/1:102:39,63:39:1372:63:2248:-171.878,0,-93.0735	0/1:64:30,34:30:1055:34:1216:-90.4806,0,-75.9941	0/0:113:113,0:113:3991:0:0:0,-34.0164,-359.382	0/0:62:62,0:62:2192:0:0:0,-18.6639,-197.542	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:79:32,47:32:1139:47:1680:-127.706,0,-79.037	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:10:9,1:9:315:1:36:-0.587975,0,-25.6769	0/1:43:20,23:20:704:23:817:-60.907,0,-50.7402	0/1:35:14,21:14:504:21:739:-56.2963,0,-35.162	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:15:2,13:2:72:13:468:-37.9442,0,-2.32127	0/0:44:44,0:44:1580:0:0:0,-13.2453,-141.47	0/1:98:49,49:49:1756:49:1723:-125.853,0,-128.823	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:302:142,160:142:5032:160:5702:-422.386,0,-362.112	0/1:103:46,57:46:1640:57:2031:-152.056,0,-116.88	0/1:67:30,37:30:1080:37:1328:-99.6532,0,-77.3442	0/1:58:34,24:34:1208:24:860:-60.2621,0,-91.5663	0/0:165:163,2:163:5831:2:72:0,-42.8332,-517.999	0/1:149:41,108:41:1468:108:3830:-300.043,0,-87.5602	0/1:38:20,18:20:716:18:639:-46.3991,0,-53.2835	0/1:56:37,19:37:1312:19:674:-44.1298,0,-101.281	0/1:37:13,24:13:453:24:851:-65.7713,0,-29.9609	0/1:23:6,17:6:212:17:604:-47.7669,0,-12.5011	0/0:96:96,0:96:3423:0:0:0,-28.8989,-308.249	0/0:39:39,0:39:1379:0:0:0,-11.7402,-124.408	0/0:94:94,0:94:3344:0:0:0,-28.2968,-301.064	0/0:190:189,1:189:6751:1:36:0,-53.5974,-604.064	0/1:28:12,16:12:424:16:572:-43.3846,0,-30.0676	0/0:134:134,0:134:4755:0:0:0,-40.338,-428.112	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.218	0/1:81:40,41:40:1436:41:1476:-108.753,0,-105.154	0/0:127:127,0:127:4491:0:0:0,-38.2308,-404.364	0/1:59:25,34:25:892:34:1201:-90.6329,0,-62.5675	0/1:71:39,32:39:1396:32:1144:-81.8964,0,-104.566	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:132:57,75:57:2039:75:2680:-201.709,0,-144.028	0/1:27:14,13:14:496:13:460:-33.6076,0,-36.8465	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:66:66,0:66:2343:0:0:0,-19.868,-211.094	0/0:33:33,0:33:1164:0:0:0,-9.93399,-105.053	0/1:71:31,40:31:1107:40:1432:-107.804,0,-78.567	0/1:69:16,53:16:555:53:1888:-149.427,0,-29.505	0/0:211:211,0:211:7532:0:0:0,-63.5173,-677.677	0/0:96:95,1:95:3404:1:36:0,-25.3006,-302.948
chr05	25159039	.	A	T	98685.4	PASS	AB=0.445424;ABP=94.027;AC=138;AF=0.734043;AN=188;AO=4762;CIGAR=1X;DP=6720;DPB=6720;DPRA=72.2473;EPP=10343.6;EPPR=4250.41;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.903;MQMR=59.9939;NS=94;NUMALT=1;ODDS=0.0148127;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169964;QR=69705;RO=1956;RPL=4762;RPP=10343.6;RPPR=4250.41;RPR=0;RUN=1;SAF=4762;SAP=10343.6;SAR=0;SRF=1956;SRP=4250.41;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:7,12:7:248:12:428:-33.1392,0,-16.9446	1/1:72:0,72:0:0:72:2575:-231.999,-21.6742,0	0/1:104:59,45:59:2109:45:1595:-112.532,0,-158.77	1/1:191:0,191:0:0:191:6829:-614.652,-57.4967,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:75:36,39:36:1273:39:1404:-104.082,0,-92.2937	1/1:77:0,77:0:0:77:2751:-247.823,-23.1793,0	0/1:42:28,14:28:1000:14:500:-32.6929,0,-77.6721	1/1:107:0,107:0:0:107:3840:-345.709,-32.2102,0	1/1:46:0,46:0:0:46:1638:-147.708,-13.8474,0	1/1:86:0,86:0:0:86:3023:-272.272,-25.8886,0	0/1:83:42,41:42:1493:41:1476:-108.151,0,-109.677	0/1:58:31,27:31:1108:27:955:-68.8051,0,-82.5713	0/1:73:39,34:39:1396:34:1216:-87.7714,0,-103.964	1/1:62:0,62:0:0:62:2220:-200.029,-18.6639,0	0/1:32:11,21:11:377:21:756:-58.6984,0,-24.625	1/1:33:1,32:1:36:32:1152:-100.392,-6.33572,0	1/1:19:0,19:0:0:19:680:-61.3384,-5.71957,0	0/1:124:63,61:63:2252:61:2192:-160.215,0,-165.615	0/1:139:73,66:73:2609:66:2345:-169.463,0,-193.213	0/1:71:51,20:51:1832:20:711:-42.9425,0,-143.788	0/1:118:58,60:58:2049:60:2123:-155.817,0,-149.159	0/1:43:6,37:6:216:37:1315:-105.707,0,-6.84622	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:135:0,135:0:0:135:4794:-431.614,-40.6391,0	1/1:138:0,138:0:0:138:4908:-441.827,-41.5421,0	0/1:37:16,21:16:572:21:756:-57.2291,0,-40.6753	0/1:279:157,122:157:5577:122:4339:-306.697,0,-418.064	0/1:137:75,62:75:2700:62:2187:-155.852,0,-202.002	1/1:86:0,86:0:0:86:3068:-276.348,-25.8886,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3132,-1.20412,0	1/1:179:0,179:0:0:179:6400:-575.961,-53.8844,0	1/1:41:0,41:0:0:41:1449:-130.704,-12.3422,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:85:53,31:53:1896:31:1103:-73.9336,0,-145.272	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:57:40,17:40:1440:17:612:-38.1245,0,-112.739	0/1:60:35,25:35:1256:25:896:-62.8986,0,-95.2835	1/1:53:0,53:0:0:53:1865:-168.124,-15.9546,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:62:32,30:32:1152:30:1076:-78.489,0,-85.3263	0/1:101:61,40:61:2188:40:1427:-98.3227,0,-166.782	0/1:65:35,30:35:1245:30:1071:-77.1347,0,-92.7858	1/1:116:0,116:0:0:116:4160:-374.582,-34.9195,0	1/1:63:0,63:0:0:63:2260:-203.661,-18.9649,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:79:48,31:48:1716:31:1112:-76.61,0,-130.944	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:41:23,18:23:824:18:640:-45.5871,0,-62.1411	0/1:35:21,14:21:744:14:504:-35.162,0,-56.7483	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	1/1:45:0,45:0:0:45:1620:-144.726,-13.5464,0	0/1:96:47,49:47:1684:49:1756:-129.425,0,-122.948	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:302:162,140:162:5789:140:5003:-359.489,0,-430.213	0/1:103:57,46:57:1999:46:1628:-115.798,0,-149.172	0/1:64:35,29:35:1244:29:1040:-74.6484,0,-92.9987	0/1:53:22,31:22:792:31:1099:-83.2649,0,-55.6511	1/1:167:2,165:2:72:165:5880:-522.444,-43.4353,0	0/1:147:106,41:106:3702:41:1472:-88.5232,0,-289.128	0/1:40:18,22:18:648:22:784:-58.7977,0,-46.6107	0/1:53:19,34:19:680:34:1199:-91.817,0,-45.5746	0/1:38:26,12:26:932:12:432:-27.7821,0,-72.7574	0/1:25:19,6:19:665:6:208:-11.5333,0,-52.647	1/1:95:0,95:0:0:95:3390:-305.279,-28.5979,0	1/1:40:0,40:0:0:40:1418:-127.916,-12.0412,0	1/1:91:0,91:0:0:91:3263:-293.775,-27.3937,0	1/1:193:1,192:1:36:192:6864:-614.227,-54.5005,0	0/1:29:17,12:17:612:12:432:-30.4913,0,-46.6836	1/1:135:0,135:0:0:135:4817:-433.685,-40.6391,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	1/1:62:0,62:0:0:62:2212:-199.327,-18.6639,0	0/1:82:42,40:42:1508:40:1436:-104.853,0,-111.33	1/1:129:0,129:0:0:129:4585:-412.814,-38.8329,0	0/1:57:34,23:34:1190:23:828:-57.6854,0,-90.2423	0/1:72:33,39:33:1180:39:1396:-104.265,0,-84.8339	1/1:53:0,53:0:0:53:1874:-168.937,-15.9546,0	0/1:131:76,55:76:2720:55:1976:-138.68,0,-205.609	0/1:27:13,14:13:453:14:504:-37.5703,0,-32.9718	1/1:58:0,58:0:0:58:2054:-185.13,-17.4597,0	1/1:62:0,62:0:0:62:2190:-197.327,-18.6639,0	1/1:34:0,34:0:0:34:1220:-110.101,-10.235,0	0/1:73:42,31:42:1504:31:1103:-77.6046,0,-113.679	0/1:67:52,15:52:1843:15:540:-28.7675,0,-145.981	1/1:208:0,208:0:0:208:7436:-669.24,-62.6142,0	1/1:96:1,94:1:32:94:3370:-300.268,-25.7384,0
chr05	25199141	.	G	A	138621	PASS	AB=0.466407;ABP=48.3823;AC=139;AF=0.739362;AN=188;AO=6716;CIGAR=1X;DP=9204;DPB=9204;DPRA=32.9785;EPP=14586.6;EPPR=5403.46;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.9193;MQMR=59.9811;NS=94;NUMALT=1;ODDS=1.1345;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237889;QR=88636;RO=2487;RPL=0;RPP=14586.6;RPPR=5403.46;RPR=6716;RUN=1;SAF=0;SAP=14586.6;SAR=6716;SRF=0;SRP=5403.46;SRR=2487;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:37,28:37:1316:28:996:-70.3879,0,-99.1602	1/1:102:0,102:0:0:102:3648:-328.525,-30.7051,0	0/1:112:55,57:55:1976:57:2023:-148.627,0,-144.399	1/1:147:4,143:4:144:143:5013:-438.008,-30.9378,0	1/1:94:0,94:0:0:94:3355:-302.167,-28.2968,0	1/1:57:0,57:0:0:57:2016:-181.7,-17.1587,0	0/1:112:44,68:44:1548:68:2403:-182.805,0,-105.894	1/1:155:0,155:0:0:155:5493:-494.497,-46.6597,0	0/1:136:65,71:65:2283:71:2517:-185.841,0,-164.79	1/1:81:0,81:0:0:81:2876:-259.053,-24.3834,0	1/1:68:0,68:0:0:68:2406:-216.794,-20.47,0	1/1:103:0,103:0:0:103:3515:-316.552,-31.0061,0	0/1:99:55,44:55:1967:44:1576:-112.33,0,-147.502	0/1:93:51,42:51:1798:42:1474:-104.957,0,-134.102	0/1:107:58,49:58:2071:49:1737:-124.4,0,-154.45	1/1:71:1,70:1:36:70:2473:-219.225,-17.7749,0	0/1:44:25,19:25:887:19:676:-47.9227,0,-66.9028	1/1:46:0,46:0:0:46:1587:-143.105,-13.8474,0	1/1:36:0,36:0:0:36:1292:-116.581,-10.8371,0	0/1:151:67,84:67:2408:84:2966:-221.715,0,-171.521	0/1:171:93,78:93:3300:78:2752:-196.444,0,-245.743	0/1:124:88,36:88:3143:36:1296:-79.5986,0,-245.767	0/1:157:75,82:75:2688:82:2927:-216.403,0,-194.903	1/1:105:5,100:5:180:100:3519:-300.364,-15.0561,0	1/1:132:1,131:1:36:131:4650:-415.067,-36.1377,0	1/1:247:1,246:1:36:246:8756:-784.428,-70.7561,0	1/1:244:1,243:1:36:243:8600:-770.391,-69.853,0	0/1:28:12,16:12:419:16:548:-41.2125,0,-29.6092	0/1:288:163,125:163:5828:125:4414:-310.245,0,-437.936	0/1:139:74,65:74:2648:65:2332:-167.806,0,-196.723	1/1:118:0,118:0:0:118:4190:-377.283,-35.5215,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:203:0,203:0:0:203:7167:-645.09,-61.1091,0	1/1:119:0,119:0:0:119:4250:-382.122,-35.8226,0	1/1:55:0,55:0:0:55:1936:-174.513,-16.5567,0	0/1:4:2,2:2:72:2:57:-4.20919,0,-5.6326	0/1:110:39,71:39:1396:71:2531:-194.916,0,-92.8258	1/1:33:0,33:0:0:33:1167:-105.336,-9.93399,0	0/1:173:132,41:132:4706:41:1445:-78.2654,0,-371.622	0/1:75:40,35:40:1440:35:1238:-89.1445,0,-107.32	1/1:58:0,58:0:0:58:2014:-181.483,-17.4597,0	1/1:149:0,149:0:0:149:5271:-474.358,-44.8535,0	0/1:168:69,99:69:2452:99:3513:-265.808,0,-170.36	0/1:167:100,67:100:3565:67:2381:-164.274,0,-270.785	0/1:66:36,30:36:1268:30:1080:-77.6441,0,-94.552	1/1:111:0,110:0:0:110:3901:-350.924,-33.1133,0	1/1:131:0,131:0:0:131:4625:-416.328,-39.4349,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:116:52,64:52:1860:64:2246:-167.251,0,-132.76	1/1:51:0,51:0:0:51:1806:-162.817,-15.3525,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:141:79,62:79:2795:62:2206:-156.358,0,-209.344	0/1:77:45,32:45:1583:32:1126:-78.4665,0,-119.578	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/1:6:5,1:5:172:1:36:-1.79209,0,-14.0118	1/1:97:0,97:0:0:97:3451:-310.802,-29.1999,0	0/1:83:43,40:43:1531:40:1411:-102.296,0,-113.095	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:178:104,74:104:3709:74:2623:-182.735,0,-280.427	0/1:180:66,114:66:2328:114:4041:-309.694,0,-155.587	0/1:53:22,31:22:768:31:1108:-84.0764,0,-53.483	0/1:51:33,18:33:1180:18:644:-42.9381,0,-91.1555	1/1:146:0,146:0:0:146:5189:-467.15,-43.9504,0	0/1:140:107,33:107:3844:33:1172:-63.6433,0,-304.011	0/1:39:13,26:13:468:26:932:-72.4587,0,-30.7195	0/1:38:20,18:20:712:18:640:-46.4902,0,-52.9675	0/1:35:18,17:18:644:17:612:-44.8765,0,-47.7545	0/1:35:13,22:13:464:22:792:-61.0696,0,-31.5615	1/1:168:0,168:0:0:168:5966:-537.05,-50.573,0	1/1:128:0,128:0:0:128:4548:-409.489,-38.5318,0	1/1:167:1,166:1:36:166:5853:-523.277,-46.6737,0	1/1:166:0,166:0:0:166:5922:-533.088,-49.971,0	0/1:203:92,111:92:3287:111:3912:-291.165,0,-234.94	1/1:158:0,158:0:0:158:5616:-505.562,-47.5627,0	0/1:13:8,5:8:275:5:180:-12.6387,0,-21.1701	1/1:103:0,103:0:0:103:3651:-328.78,-31.0061,0	0/1:92:53,39:53:1904:39:1392:-97.8843,0,-143.943	1/1:216:0,216:0:0:216:7662:-689.614,-65.0225,0	0/1:74:40,34:40:1421:34:1199:-85.9382,0,-105.909	0/1:98:45,53:45:1616:53:1875:-139.527,0,-116.229	1/1:50:0,50:0:0:50:1737:-156.612,-15.0515,0	0/1:157:78,79:78:2792:79:2776:-202.774,0,-204.258	0/1:25:15,10:15:540:10:352:-24.4924,0,-41.4108	1/1:80:0,80:0:0:80:2800:-252.241,-24.0824,0	1/1:69:0,69:0:0:69:2456:-221.295,-20.7711,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:96:63,33:63:2248:33:1188:-78.3297,0,-173.685	0/1:88:66,22:66:2352:22:776:-43.6715,0,-185.446	1/1:134:0,134:0:0:134:4758:-428.336,-40.338,0	1/1:102:0,102:0:0:102:3613:-325.376,-30.7051,0
chr05	25222758	.	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chr05	25536484	.	G	A	22657.6	PASS	AB=0.50262;ABP=3.16958;AC=46;AF=0.247312;AN=186;AO=1361;CIGAR=1X;DP=5729;DPB=5729;DPRA=1.03221;EPP=2958.38;EPPR=9481.49;GTI=1;LEN=1;MEANALT=1.03846;MQM=59.7149;MQMR=59.9409;NS=93;NUMALT=1;ODDS=1.73367;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48660;QR=156128;RO=4365;RPL=1361;RPP=2958.38;RPPR=9481.49;RPR=0;RUN=1;SAF=0;SAP=2958.38;SAR=1361;SRF=0;SRP=9481.49;SRR=4365;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:16,11:16:576:11:388:-27.1296,0,-44.0472	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/1:61:41,20:41:1464:20:716:-46.3942,0,-113.693	0/0:220:220,0:220:7860:0:0:0,-66.2266,-707.422	0/0:18:17,1:17:612:1:36:0,-1.82537,-51.8203	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:84:41,43:41:1452:43:1540:-113.593,0,-105.653	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/1:67:33,34:33:1176:34:1224:-90.298,0,-85.9788	0/0:81:81,0:81:2858:0:0:0,-24.3834,-257.455	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:74:74,0:74:2655:0:0:0,-22.2762,-239.195	0/1:73:33,40:33:1176:40:1440:-107.869,0,-84.1726	0/1:41:22,19:22:792:19:672:-48.4646,0,-59.2634	0/1:73:38,35:38:1360:35:1237:-89.6299,0,-100.725	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.4	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1447	0/1:69:33,36:33:1184:36:1275:-94.2779,0,-86.0972	0/1:136:68,68:68:2432:68:2436:-178.541,0,-178.196	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:45:22,23:22:788:23:828:-61.2954,0,-57.6984	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:139:138,1:138:4916:1:36:0,-38.2449,-438.937	0/0:146:146,0:146:5205:0:0:0,-43.9504,-468.589	0/1:40:23,17:23:819:17:604:-42.6209,0,-61.9904	0/1:119:53,66:53:1904:66:2372:-177.909,0,-135.814	0/0:56:53,3:53:1908:3:108:0,-6.78727,-161.927	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	.:.:.:.:.:.:.:.	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:194:194,0:194:6928:0:0:0,-58.3998,-623.586	0/0:49:49,0:49:1731:0:0:0,-14.7505,-156.074	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:55:19,36:19:671:36:1288:-99.6669,0,-44.1591	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:62:31,30:31:1112:30:1068:-77.7095,0,-81.6687	0/1:57:32,25:32:1148:25:896:-63.7984,0,-86.4711	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:31:14,17:14:504:17:599:-44.8777,0,-36.3662	0/1:87:46,40:46:1644:40:1423:-102.23,0,-122.147	0/1:67:35,32:35:1252:32:1148:-83.4608,0,-92.8161	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:43:15,28:15:536:28:996:-77.0106,0,-35.6305	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:102:58,44:58:2080:44:1564:-110.34,0,-156.765	0/1:22:16,6:16:572:6:216:-13.1632,0,-45.1908	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:23:15,8:15:540:8:284:-18.9797,0,-41.9565	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.619	0/1:103:56,47:56:2003:47:1692:-121.558,0,-149.537	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:255:112,143:112:4008:143:5106:-382.917,0,-284.14	0/1:62:29,33:29:1035:33:1184:-88.2045,0,-74.7992	0/1:62:29,33:29:1036:33:1184:-88.2045,0,-74.8901	0/1:32:13,19:13:464:19:672:-51.1687,0,-32.4645	0/0:113:111,2:111:3972:2:72:0,-27.1797,-350.834	0/1:60:18,42:18:648:42:1504:-117.588,0,-40.5901	0/1:35:14,21:14:500:21:748:-57.1013,0,-34.8001	0/1:45:24,21:24:860:21:748:-54.0826,0,-64.1755	0/1:53:38,15:38:1364:15:540:-32.9737,0,-107.105	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.76	0/0:53:52,0:52:1856:0:0:0,-15.6536,-166.96	0/0:145:145,0:145:5212:0:0:0,-43.6493,-469.206	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:112:111,1:111:3979:1:36:0,-30.1171,-354.699	0/1:6:4,2:4:144:2:72:-5.02195,0,-11.5074	0/0:78:77,1:77:2759:1:36:0,-19.8821,-244.949	0/1:17:12,5:12:432:5:176:-11.0675,0,-34.1037	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:36:25,11:25:891:11:396:-25.1457,0,-69.6717	0/0:142:142,0:142:5079:0:0:0,-42.7463,-457.248	0/1:72:33,39:33:1188:39:1400:-104.58,0,-85.5544	0/1:65:41,24:41:1472:24:864:-58.4956,0,-113.203	0/0:52:51,1:51:1836:1:36:0,-12.0553,-161.922	0/1:129:65,64:65:2316:64:2284:-166.979,0,-169.868	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.847	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.482	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.169	0/1:109:56,53:56:1986:53:1888:-137.368,0,-146.102	0/1:64:19,45:19:684:45:1620:-126.822,0,-42.6244	0/0:126:126,0:126:4497:0:0:0,-37.9298,-404.898	0/0:124:124,0:124:4408:0:0:0,-37.3277,-396.893
chr05	25551883	.	GAGGT	AAGGT,AAGGA	104374	PASS	AB=0.513078,0.485179;ABP=6.41802,7.38732;AC=141,47;AF=0.75,0.25;AN=188;AO=3764,1123;CIGAR=1X4M,1X3M1X;DP=4901;DPB=4901;DPRA=0,1.00555;EPP=8176.43,2441.57;EPPR=7.35324;GTI=1;LEN=1,5;MEANALT=1.68085,2.11321;MQM=56.53,44.8415;MQMR=60;NS=94;NUMALT=2;ODDS=2.73247;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=134504,39928;QR=70;RO=2;RPL=0,0;RPP=8176.43,2441.57;RPPR=7.35324;RPR=3764,1123;RUN=1,1;SAF=3764,1123;SAP=8176.43,2441.57;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:52:0,29,22:0:0:29,22:1036,781:-147.211,-62.8288,-54.0989,-84.3766,0,-77.754	1/1:56:0,56,0:0:0:56,0:2016,0:-181.322,-16.8577,0,-181.322,-16.8577,-181.322	1/2:87:0,47,40:0:0:47,40:1684,1419:-251.518,-114.427,-100.279,-137.445,0,-125.403	1/1:95:1,93,1:1:34:93,1:3332,36:-296.315,-25.2453,0,-293.724,-25.0957,-296.181	1/1:38:0,38,0:0:0:38,0:1360,0:-122.124,-11.4391,0,-122.124,-11.4391,-122.124	1/1:29:0,29,0:0:0:29,0:1044,0:-94.1811,-8.72987,0,-94.1811,-8.72987,-94.1811	1/2:67:0,35,32:0:0:35,32:1244,1144:-193.579,-92.2733,-81.7372,-101.66,0,-92.0269	1/1:93:0,93,0:0:0:93,0:3324,0:-298.516,-27.9958,0,-298.516,-27.9958,-298.516	1/2:63:0,38,25:0:0:38,25:1356,898:-182.699,-72.3675,-60.9283,-110.686,0,-103.16	1/1:42:0,42,0:0:0:42,0:1496,0:-134.916,-12.6433,0,-134.916,-12.6433,-134.916	1/1:43:0,43,0:0:0:43,0:1544,0:-139.179,-12.9443,0,-139.179,-12.9443,-139.179	1/1:87:0,87,0:0:0:87,0:3101,0:-278.658,-26.1896,0,-278.658,-26.1896,-278.658	1/2:63:0,30,33:0:0:30,33:1080,1175:-182.501,-94.6795,-85.6486,-88.1762,0,-78.2422	1/2:33:0,17,16:0:0:17,16:608,575:-96.106,-46.5647,-41.4472,-49.8971,0,-45.0806	1/2:62:0,29,33:0:0:29,33:1040,1187:-179.568,-94.7971,-86.0672,-85.1262,0,-75.1922	1/1:74:0,73,0:0:0:73,0:2624,0:-235.867,-21.9752,0,-235.867,-21.9752,-235.867	1/2:23:0,9,14:0:0:9,14:320,504:-67.0318,-40.98,-38.2707,-26.4072,0,-22.1928	1/1:22:0,22,0:0:0:22,0:792,0:-71.5353,-6.62266,0,-71.5353,-6.62266,-71.5353	1/1:36:0,36,0:0:0:36,0:1292,0:-116,-10.8371,0,-116,-10.8371,-116	1/2:54:0,27,27:0:0:27,27:937,956:-152.689,-76.8731,-68.7453,-76.1626,0,-68.0348	1/2:89:0,54,35:0:0:54,35:1939,1249:-258.496,-100.696,-84.4403,-158.155,0,-147.619	1/2:21:0,6,15:0:0:6,15:216,534:-60.7153,-43.093,-41.2868,-17.9793,0,-13.4639	1/2:55:0,35,20:0:0:35,20:1244,712:-156.877,-55.6009,-45.0649,-101.622,0,-95.6013	1/2:42:0,35,7:0:0:35,7:1260,251:-123.28,-20.5211,-9.98505,-103.114,0,-101.006	1/1:44:0,44,0:0:0:44,0:1574,0:-141.39,-13.2453,0,-141.39,-13.2453,-141.39	1/1:110:0,110,0:0:0:110,0:3944,0:-354.816,-33.1133,0,-354.816,-33.1133,-354.816	1/1:133:0,133,0:0:0:133,0:4756,0:-427.76,-40.037,0,-427.76,-40.037,-427.76	1/2:34:0,21,13:0:0:21,13:756,468:-99.5275,-37.8737,-31.5521,-62.01,0,-58.0966	1/2:101:0,65,36:0:0:65,36:2325,1265:-290.828,-101.466,-81.8994,-189.712,0,-178.875	1/1:58:0,55,3:0:0:55,3:1953,107:-175.531,-16.5567,0,-166.934,-7.6078,-166.031	1/1:46:0,46,0:0:0:46,0:1621,0:-145.968,-13.8474,0,-145.968,-13.8474,-145.968	1/2:5:0,4,1:0:0:4,1:144,33:-14.6827,-2.98202,-1.7779,-12.0349,0,-11.7338	1/1:10:0,10,0:0:0:10,0:356,0:-32.1596,-3.0103,0,-32.1596,-3.0103,-32.1596	1/1:8:0,8,0:0:0:8,0:284,0:-25.8783,-2.40824,0,-25.8783,-2.40824,-25.8783	1/1:12:0,11,1:0:0:11,1:396,36:-35.5905,-3.31133,0,-32.6891,-0.0537428,-32.3881	1/1:16:0,16,0:0:0:16,0:568,0:-51.4021,-4.81648,0,-51.4021,-4.81648,-51.4021	1/1:153:0,153,0:0:0:153,0:5474,0:-491.847,-46.0576,0,-491.847,-46.0576,-491.847	1/1:37:0,37,0:0:0:37,0:1316,0:-118.521,-11.1381,0,-118.521,-11.1381,-118.521	1/1:42:0,42,0:0:0:42,0:1508,0:-135.672,-12.6433,0,-135.672,-12.6433,-135.672	1/2:3:0,1,2:0:0:1,2:36,72:-9.0776,-6.14012,-5.83909,-3.29553,0,-2.69347	1/2:57:0,35,22:0:0:35,22:1241,789:-164.797,-63.7488,-53.2128,-101.402,0,-94.7789	1/1:20:0,20,0:0:0:20,0:708,0:-63.4648,-6.0206,0,-63.4648,-6.0206,-63.4648	1/2:78:0,41,37:0:0:41,37:1468,1319:-225.807,-106.352,-94.0094,-119.81,0,-108.672	1/2:43:0,22,20:0:0:22,20:792,717:-122.223,-57.6038,-50.9811,-64.6203,0,-58.5997	1/1:42:0,42,0:0:0:42,0:1493,0:-134.176,-12.6433,0,-134.176,-12.6433,-134.176	1/1:47:0,47,0:0:0:47,0:1680,0:-151.442,-14.1484,0,-151.442,-14.1484,-151.442	1/2:71:0,40,31:0:0:40,31:1410,1105:-203.767,-89.2608,-77.2196,-114.858,0,-105.526	1/2:67:0,31,36:0:0:31,36:1116,1268:-193.145,-102.102,-92.7703,-91.3967,0,-80.5596	1/2:16:0,4,12:0:0:4,12:144,426:-45.8588,-34.1073,-32.9031,-12.1078,0,-8.49549	1/1:75:0,75,0:0:0:75,0:2684,0:-241.392,-22.5773,0,-241.392,-22.5773,-241.392	1/1:60:0,60,0:0:0:60,0:2133,0:-191.921,-18.0618,0,-191.921,-18.0618,-191.921	1/1:125:0,122,3:0:0:122,3:4364,108:-392.266,-36.7257,0,-383.588,-27.6929,-382.685	1/2:33:0,16,17:0:0:16,17:576,597:-95.3776,-48.4223,-43.6058,-47.309,0,-42.1915	1/1:29:0,29,0:0:0:29,0:1032,0:-92.8409,-8.72987,0,-92.8409,-8.72987,-92.8409	1/2:9:0,1,8:0:0:1,8:36,286:-26.3354,-23.4007,-23.0997,-3.29354,0,-0.885298	1/2:66:0,36,30:0:0:36,30:1258,1068:-188.225,-86.0812,-75.2441,-102.494,0,-93.4632	1/2:38:0,20,17:0:0:20,17:720,609:-107.558,-48.8157,-42.7951,-58.7414,0,-53.6239	1/2:6:0,3,3:0:0:3,3:108,108:-17.8112,-8.99805,-8.09496,-9.16979,0,-8.2667	1/2:5:0,1,4:0:0:1,4:36,144:-14.8173,-11.8795,-11.5785,-3.29624,0,-2.09212	1/1:49:0,49,0:0:0:49,0:1750,0:-157.282,-14.7505,0,-157.282,-14.7505,-157.282	1/2:70:0,24,45:0:0:24,45:860,1592:-196.716,-126.767,-119.542,-70.0199,0,-56.4735	1/2:6:0,4,2:0:0:4,2:144,72:-17.8043,-6.14012,-4.936,-12.0199,0,-11.4178	1/2:51:0,23,28:0:0:23,28:824,994:-146.189,-78.9998,-72.0761,-67.5413,0,-59.1124	1/2:63:0,24,39:0:0:24,39:856,1386:-180.179,-110.496,-103.271,-70.0354,0,-58.2952	1/2:28:0,12,16:0:0:12,16:432,571:-81.4637,-46.2318,-42.6194,-35.5884,0,-30.7719	1/2:39:0,23,16:0:0:23,16:816,569:-111.89,-46.0462,-39.1225,-66.1946,0,-61.3781	1/1:84:0,82,1:0:0:82,1:2925,36:-262.643,-24.6845,0,-259.751,-21.7862,-259.45	1/2:90:0,45,45:0:0:45,45:1608,1581:-258.149,-127.299,-113.753,-131.201,0,-117.655	1/2:20:0,6,14:0:0:6,14:212,498:-57.5997,-40.3419,-38.5357,-17.6102,0,-13.3957	1/2:51:0,28,23:0:0:28,23:1008,817:-147.821,-65.83,-57.4012,-82.3444,0,-75.4207	1/2:48:0,21,27:0:0:21,27:756,963:-139.12,-77.4482,-71.1266,-62.0274,0,-53.8996	1/1:7:0,7,0:0:0:7,0:252,0:-23.0261,-2.10721,0,-23.0261,-2.10721,-23.0261	1/1:52:0,51,0:0:0:51,0:1797,0:-161.376,-15.3525,0,-161.376,-15.3525,-161.376	1/1:56:0,55,0:0:0:55,0:1964,0:-175.949,-16.5567,0,-175.949,-16.5567,-175.949	1/1:86:0,84,0:0:0:84,0:2992,0:-268.874,-25.2865,0,-268.874,-25.2865,-268.874	1/1:75:0,75,0:0:0:75,0:2673,0:-240.48,-22.5773,0,-240.48,-22.5773,-240.48	1/2:47:0,20,27:0:0:20,27:712,953:-134.886,-77.1498,-71.1292,-58.0882,0,-49.9604	1/1:41:0,41,0:0:0:41,0:1442,0:-129.902,-12.3422,0,-129.902,-12.3422,-129.902	1/1:5:0,5,0:0:0:5,0:180,0:-16.535,-1.50515,0,-16.535,-1.50515,-16.535	1/1:49:0,49,0:0:0:49,0:1748,0:-157.525,-14.7505,0,-157.525,-14.7505,-157.525	1/2:56:0,27,29:0:0:27,29:968,1034:-162.134,-83.2677,-75.1399,-79.2211,0,-70.4912	1/1:102:0,100,1:0:0:100,1:3592,33:-323.035,-30.103,0,-320.39,-27.4717,-320.089	1/2:46:0,23,23:0:0:23,23:828,811:-132.113,-64.6473,-57.7236,-67.8176,0,-60.8939	1/2:47:0,31,16:0:0:31,16:1116,555:-135.104,-44.2216,-34.8896,-91.2275,0,-86.4111	1/1:28:0,28,0:0:0:28,0:1000,0:-90.169,-8.42884,0,-90.169,-8.42884,-90.169	1/2:104:0,56,48:0:0:56,48:2012,1693:-299.417,-135.488,-118.631,-164.281,0,-149.832	1/2:17:0,8,9:0:0:8,9:288,322:-49.7794,-26.3041,-23.8959,-23.8321,0,-21.1228	1/1:49:0,49,0:0:0:49,0:1764,0:-158.684,-14.7505,0,-158.684,-14.7505,-158.684	1/1:62:0,61,0:0:0:61,0:2184,0:-195.593,-18.3628,0,-195.593,-18.3628,-195.593	1/1:24:0,24,0:0:0:24,0:864,0:-77.8188,-7.22472,0,-77.8188,-7.22472,-77.8188	1/2:97:0,52,45:0:0:52,45:1872,1604:-279.607,-127.005,-111.351,-152.955,0,-139.408	1/2:71:0,18,53:0:0:18,53:629,1898:-203.469,-152.394,-146.975,-51.425,0,-35.4704	1/1:33:1,32,0:1:36:32,0:1144,0:-99.636,-6.33572,0,-99.9371,-9.63296,-102.875	1/1:123:0,123,0:0:0:123,0:4393,0:-395.27,-37.0267,0,-395.27,-37.0267,-395.27
chr05	25551901	.	G	T	210066	PASS	AB=0.477703;ABP=23.5393;AC=141;AF=0.75;AN=188;AO=7738;CIGAR=1X;DP=10250;DPB=10250;DPRA=0;EPP=17.5983;EPPR=52.5259;GTI=0;LEN=1;MEANALT=1.07447;MQM=57.821;MQMR=51.818;NS=94;NUMALT=1;ODDS=10.201;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=276483;QR=88065;RO=2505;RPL=17;RPP=16658.5;RPPR=5373.28;RPR=7721;RUN=1;SAF=3772;SAP=13.5719;SAR=3966;SRF=1141;SRP=46.1181;SRR=1364;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:82:38,44:38:1332:44:1580:-117.646,0,-94.554	1/1:136:0,136:0:0:136:4876:-438.519,-40.9401,0	0/1:140:68,72:68:2398:72:2590:-190.974,0,-171.855	1/1:180:1,179:1:36:179:6391:-571.306,-50.6369,0	1/1:87:0,87:0:0:87:3099:-278.385,-26.1896,0	1/1:65:0,65:0:0:65:2324:-209.038,-19.567,0	0/1:151:75,76:75:2619:76:2712:-198.637,0,-189.107	1/1:177:1,176:1:32:176:6303:-562.844,-50.0845,0	0/1:117:40,77:40:1423:77:2744:-211.844,0,-91.8451	1/1:96:0,96:0:0:96:3412:-307.201,-28.8989,0	1/1:100:0,100:0:0:100:3584:-322.552,-30.103,0	1/1:157:0,157:0:0:157:5620:-505.266,-47.2617,0	0/1:115:53,62:53:1870:62:2220:-165.069,0,-132.182	0/1:122:53,69:53:1877:69:2437:-182.761,0,-131.708	0/1:140:79,61:79:2797:61:2184:-154.567,0,-207.352	1/1:127:1,126:1:36:126:4516:-402.43,-34.6342,0	0/1:84:43,41:43:1539:41:1468:-106.998,0,-112.828	1/1:80:0,80:0:0:80:2872:-258.611,-24.0824,0	1/1:68:0,68:0:0:68:2427:-218.183,-20.47,0	0/1:111:61,50:61:2168:50:1777:-126.217,0,-160.276	0/1:165:82,83:82:2905:83:2963:-216.581,0,-210.242	0/1:42:29,13:29:1031:13:464:-29.4493,0,-79.5999	0/1:109:59,50:59:2011:50:1791:-128.568,0,-146.182	1/1:110:9,101:9:315:101:3604:-295.955,-4.74518,0	1/1:90:0,90:0:0:90:3197:-287.402,-27.0927,0	1/1:274:1,273:1:36:273:9744:-872.804,-78.8839,0	1/1:250:0,250:0:0:250:8949:-804.678,-75.2575,0	0/1:74:25,49:25:883:49:1760:-136.247,0,-56.8261	0/1:218:109,109:109:3821:109:3885:-283.889,0,-276.206	1/1:117:3,114:3:108:114:4059:-354.843,-25.2398,0	1/1:102:0,102:0:0:102:3624:-326.117,-30.7051,0	0/1:7:3,4:3:104:4:139:-10.7178,0,-7.58043	1/1:16:0,16:0:0:16:567:-51.132,-4.81648,0	1/1:13:0,13:0:0:13:468:-42.3247,-3.91339,0	1/1:18:1,17:1:36:17:612:-51.7078,-1.85992,0	1/1:23:0,23:0:0:23:828:-74.7905,-6.92369,0	1/1:350:0,348:0:0:348:12406:-1114.52,-104.758,0	1/1:69:0,69:0:0:69:2465:-221.706,-20.7711,0	1/1:92:1,91:1:32:91:3260:-290.041,-24.4954,0	0/1:4:3,1:3:108:1:36:-2.39244,0,-8.77657	0/1:115:45,70:45:1600:70:2478:-188.595,0,-108.604	1/1:56:0,56:0:0:56:2004:-179.608,-16.8577,0	0/1:158:91,66:91:3180:66:2368:-165.364,0,-237.142	0/1:136:67,69:67:2350:69:2472:-181.573,0,-169.905	1/1:110:0,110:0:0:110:3940:-353.805,-33.1133,0	1/1:95:0,95:0:0:95:3393:-305.392,-28.5979,0	0/1:101:47,54:47:1650:54:1936:-143.814,0,-117.03	0/1:165:74,91:74:2570:91:3256:-243.407,0,-180.383	0/1:69:50,19:50:1760:19:676:-40.3005,0,-136.898	1/1:140:0,140:0:0:140:4974:-447.36,-42.1442,0	1/1:106:0,106:0:0:106:3784:-340.225,-31.9092,0	1/1:137:5,132:5:171:132:4736:-410.495,-25.6535,0	0/1:92:52,40:52:1829:40:1412:-99.5883,0,-136.54	1/1:45:0,45:0:0:45:1601:-143.165,-13.5464,0	0/1:21:14,7:14:496:7:252:-16.7039,0,-38.3565	0/1:109:57,52:57:2011:52:1856:-134.281,0,-146.86	0/1:52:27,25:27:945:25:900:-65.6271,0,-68.8546	0/1:7:4,3:4:144:3:108:-7.96661,0,-11.0048	0/1:9:7,2:7:248:2:72:-4.1265,0,-19.7276	1/1:101:0,101:0:0:101:3591:-322.849,-30.404,0	0/1:145:85,60:85:2991:60:2141:-149.054,0,-222.755	0/1:8:3,5:3:108:5:180:-14.0543,0,-7.57363	0/1:133:75,57:75:2626:57:2032:-143.185,0,-194.126	0/1:137:89,47:89:3145:47:1684:-110.429,0,-239.023	0/1:64:32,32:32:1137:32:1136:-83.1839,0,-82.6026	0/1:70:36,33:36:1284:33:1184:-84.5628,0,-94.0357	1/1:123:1,122:1:36:122:4350:-387.733,-33.4782,0	0/1:100:48,52:48:1707:52:1861:-137.379,0,-121.938	0/1:50:29,21:29:1028:21:752:-52.9096,0,-77.1327	0/1:66:34,32:34:1197:32:1152:-83.8592,0,-87.303	0/1:131:75,56:75:2587:56:2004:-141.152,0,-192.094	1/1:20:0,20:0:0:20:716:-64.7576,-6.0206,0	1/1:83:0,83:0:0:83:2957:-265.895,-24.9855,0	1/1:104:0,104:0:0:104:3715:-333.206,-31.3071,0	1/1:205:0,205:0:0:205:7342:-660.444,-61.7112,0	1/1:154:0,154:0:0:154:5478:-492.794,-46.3586,0	0/1:134:78,56:78:2728:56:2006:-139.897,0,-204.175	1/1:125:0,125:0:0:125:4464:-401.607,-37.6288,0	0/1:14:5,9:5:176:9:324:-25.2745,0,-11.8508	1/1:119:0,119:0:0:119:4264:-383.837,-35.8226,0	0/1:142:80,62:80:2812:62:2224:-157.593,0,-208.742	1/1:200:1,199:1:36:199:7108:-635.824,-56.6575,0	0/1:152:78,74:78:2774:74:2652:-192.915,0,-202.209	0/1:105:41,64:41:1378:64:2296:-175.089,0,-91.9286	1/1:144:0,144:0:0:144:5147:-463.036,-43.3483,0	0/1:235:122,113:122:4287:113:4056:-294.187,0,-312.44	0/1:54:32,22:32:1117:22:788:-54.9542,0,-84.1017	1/1:137:0,136:0:0:136:4855:-436.358,-40.9401,0	1/1:128:0,128:0:0:128:4558:-409.027,-38.5318,0	1/1:53:1,52:1:36:52:1863:-164.033,-12.3563,0	0/1:168:90,78:90:3148:78:2800:-201.074,0,-228.734	0/1:131:92,39:92:3256:39:1404:-87.0856,0,-250.949	1/1:73:0,73:0:0:73:2620:-235.928,-21.9752,0	1/1:241:0,241:0:0:241:8604:-773.928,-72.5482,0
chr05	25551933	.	TTGCT	TTGAT,GTGAT	276606	PASS	AB=0.469859,0.52615;ABP=40.5785,31.2887;AC=141,47;AF=0.75,0.25;AN=188;AO=7590,2530;CIGAR=3M1X1M,1X2M1X1M;DP=10169;DPB=10170.2;DPRA=0,1.004;EPP=58.3986,70.3002;EPPR=5.18177;GTI=1;LEN=1,5;MEANALT=2.03191,2.38596;MQM=57.944,51.8115;MQMR=60;NS=94;NUMALT=2;ODDS=6.62547;PAIRED=0,0;PAIREDR=0;PAO=0,3;PQA=0,99;PQR=0;PRO=0;QA=270711,88707;QR=30;RO=1;RPL=7580,2529;RPP=16397.7,5488.15;RPPR=5.18177;RPR=10,1;RUN=1,1;SAF=3565,1124;SAP=63.5483,71.2649;SAR=4025,1406;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:80:0,42,38:0:0:42,38:1500,1314:-228.683,-106.536,-93.893,-122.497,0,-111.058	1/1:134:0,134,0:0:0:134,0:4808,0:-432.392,-40.338,0,-432.392,-40.338,-432.392	1/2:140:0,70,69:0:0:70,69:2510,2407:-398.617,-194.337,-173.265,-204.294,0,-183.523	1/1:181:0,180,1:0:0:180,1:6404,36:-575.644,-54.1854,0,-572.752,-50.9379,-572.451	1/1:84:0,84,0:0:0:84,0:2987,0:-268.669,-25.2865,0,-268.669,-25.2865,-268.669	1/1:63:0,63,0:0:0:63,0:2260,0:-203.283,-18.9649,0,-203.283,-18.9649,-203.283	1/2:151:0,74,77:0:0:74,77:2620,2694:-431.604,-218.438,-196.162,-213.517,0,-190.337	1/1:175:0,174,1:0:0:174,1:6214,35:-557.906,-52.3792,0,-555.061,-49.1846,-554.76	1/2:116:0,75,41:0:0:75,41:2675,1456:-335.831,-117.89,-95.3124,-218.295,0,-205.952	1/1:92:0,91,0:0:0:91,0:3236,0:-291.038,-27.3937,0,-291.038,-27.3937,-291.038	1/1:101:0,98,0:0:0:98,0:3497,0:-314.175,-29.5009,0,-314.175,-29.5009,-314.175	1/1:156:0,155,0:0:0:155,0:5538,0:-497.771,-46.6597,0,-497.771,-46.6597,-497.771	1/2:112:0,60,52:0:0:60,52:2131,1821:-320.368,-146.976,-128.914,-173.743,0,-158.089	1/2:117:0,64,53:0:0:64,53:2288,1885:-339.756,-153.259,-133.993,-186.852,0,-170.898	1/2:141:0,60,80:0:0:60,80:2160,2842:-405.83,-229.652,-211.59,-176.179,0,-152.097	1/1:124:0,123,0:0:0:123,0:4399,0:-395.127,-37.0267,0,-395.127,-37.0267,-395.127	1/2:87:0,42,45:0:0:42,45:1501,1580:-250.473,-128.195,-115.552,-122.631,0,-109.085	1/1:77:0,77,0:0:0:77,0:2768,0:-249.257,-23.1793,0,-249.257,-23.1793,-249.257	1/1:67:0,66,0:0:0:66,0:2368,0:-212.384,-19.868,0,-212.384,-19.868,-212.384	1/2:112:0,49,63:0:0:49,63:1735,2194:-318.508,-177.535,-162.784,-141.323,0,-122.358	1/2:164:0,79,83:0:0:79,83:2789,2924:-463.702,-236.652,-212.87,-227.154,0,-202.168	1/2:40:0,11,29:0:0:11,29:396,1035:-116.246,-83.9376,-80.6262,-32.6668,0,-23.937	1/2:109:0,47,60:0:0:47,60:1680,2092:-305.418,-168.497,-154.348,-137.023,0,-118.961	1/1:112:0,103,9:0:0:103,9:3687,319:-331.441,-31.0061,0,-305.735,-4.94876,-303.025	1/1:90:0,89,0:0:0:89,0:3166,0:-284.428,-26.7917,0,-284.428,-26.7917,-284.428	1/1:269:0,268,1:0:0:268,1:9584,36:-861.636,-80.676,0,-858.698,-77.3788,-858.397	1/1:242:0,239,0:0:0:239,0:8509,0:-765.001,-71.9462,0,-765.001,-71.9462,-765.001	1/2:76:0,49,26:0:0:49,26:1741,925:-216.529,-74.7718,-60.0214,-141.756,0,-133.93	1/2:223:0,109,114:0:0:109,114:3870,3995:-638.061,-323.217,-290.405,-315.195,0,-280.878	1/1:115:0,110,4:0:0:110,4:3921,141:-352.277,-33.1133,0,-340.911,-21.6357,-339.707	1/1:104:0,103,0:0:0:103,0:3668,0:-329.546,-31.0061,0,-329.546,-31.0061,-329.546	1/2:6:0,3,3:0:0:3,3:104,101:-16.8961,-8.5108,-7.60771,-8.72537,0,-7.82228	1/1:15:0,15,0:0:0:15,0:536,0:-48.3789,-4.51545,0,-48.3789,-4.51545,-48.3789	1/1:13:0,13,0:0:0:13,0:468,0:-42.3247,-3.91339,0,-42.3247,-3.91339,-42.3247	1/1:17:0,13,1:0:0:13,1:451,36:-40.5371,-3.91339,0,-37.635,-1.01166,-37.3339	1/1:23:0,23,0:0:0:23,0:816,0:-73.7141,-6.92369,0,-73.7141,-6.92369,-73.7141	1/1:336:0,332,0:0:0:332,0:11851,0:-1065.33,-99.942,0,-1065.33,-99.942,-1065.33	1/1:65:0,65,0:0:0:65,0:2285,0:-205.651,-19.567,0,-205.651,-19.567,-205.651	1/1:91:0,91,0:0:0:91,0:3251,0:-292.441,-27.3937,0,-292.441,-27.3937,-292.441	1/2:4:0,1,3:0:0:1,3:36,108:-12.0143,-9.0776,-8.77657,-3.29553,0,-2.39244	1/2:117:0,73,44:0:0:73,44:2599,1566:-338.681,-126.904,-104.928,-212.131,0,-198.886	1/1:54:0,53,0:0:0:53,0:1908,0:-171.523,-15.9546,0,-171.523,-15.9546,-171.523	1/2:163:0,69,94:0:0:69,94:2463,3285:-466.549,-266.092,-245.321,-200.81,0,-172.513	1/2:138:0,69,69:0:0:69,69:2459,2432:-397.59,-197.397,-176.626,-200.547,0,-179.776	1/1:108:0,108,0:0:0:108,0:3848,0:-346.116,-32.5112,0,-346.116,-32.5112,-346.116	1/1:93:0,93,0:0:0:93,0:3328,0:-299.519,-27.9958,0,-299.519,-27.9958,-299.519	1/2:102:0,54,48:0:0:54,48:1927,1684:-293.052,-136.091,-119.836,-157.312,0,-142.863	1/2:165:0,93,72:0:0:93,72:3301,2521:-472.799,-204.163,-176.167,-268.987,0,-247.313	1/2:70:0,20,50:0:0:20,50:711,1755:-200.353,-142.478,-136.457,-58.2288,0,-43.1773	1/1:137:0,137,0:0:0:137,0:4888,0:-439.882,-41.2411,0,-439.882,-41.2411,-439.882	1/1:104:0,104,0:0:0:104,0:3719,0:-334.806,-31.3071,0,-334.806,-31.3071,-334.806	1/1:127:1,121,5:1:30:121,5:4299,179:-383.789,-34.0352,0,-369.619,-21.9077,-370.512	1/2:94:0,41,53:0:0:41,53:1451,1869:-269.999,-151.897,-139.555,-118.454,0,-102.499	1/1:43:0,43,0:0:0:43,0:1532,0:-137.795,-12.9443,0,-137.795,-12.9443,-137.795	1/2:22:0,7,15:0:0:7,15:252,523:-63.1201,-42.5572,-40.45,-20.9184,0,-16.4029	1/2:109:0,49,58:0:0:49,58:1725,2034:-304.34,-164.064,-149.314,-140.27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chr05	25686174	.	G	A	110999	PASS	AB=0.50949;ABP=5.64801;AC=139;AF=0.747312;AN=186;AO=5356;CIGAR=1X;DP=7025;DPB=7025;DPRA=0;EPP=11633.4;EPPR=3622.85;GTI=0;LEN=1;MEANALT=1.02151;MQM=53.9229;MQMR=59.5921;NS=93;NUMALT=1;ODDS=0.474514;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189964;QR=59321;RO=1667;RPL=0;RPP=11633.4;RPPR=3622.85;RPR=5356;RUN=1;SAF=5356;SAP=11633.4;SAR=0;SRF=1667;SRP=3622.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:12,13:12:432:13:468:-34.7652,0,-31.6872	1/1:79:0,79:0:0:79:2768:-247.82,-23.7814,0	0/1:198:93,105:93:3325:105:3636:-266.435,0,-239.445	1/1:213:0,213:0:0:213:7570:-680.066,-64.1194,0	1/1:7:0,7:0:0:7:248:-22.6343,-2.10721,0	1/1:20:0,20:0:0:20:720:-64.7826,-6.0206,0	0/1:78:48,30:48:1705:30:1061:-72.2202,0,-130.25	1/1:92:0,92:0:0:92:3288:-294.271,-27.6948,0	0/1:89:33,56:33:1172:56:2001:-152.928,0,-78.9834	1/1:82:0,82:0:0:82:2908:-261.591,-24.6845,0	1/1:46:0,46:0:0:46:1637:-147.198,-13.8474,0	1/1:75:0,75:0:0:75:2675:-239.081,-22.5773,0	0/1:76:38,38:38:1360:38:1349:-97.9782,0,-99.8142	0/1:41:19,22:19:665:22:792:-58.7262,0,-47.3383	0/1:85:44,41:44:1561:41:1456:-105.581,0,-115.148	1/1:56:0,56:0:0:56:1974:-177.445,-16.8577,0	0/1:39:22,17:22:792:17:593:-41.5612,0,-59.8573	1/1:15:0,15:0:0:15:536:-48.4511,-4.51545,0	1/1:23:0,23:0:0:23:820:-73.9386,-6.92369,0	0/1:85:45,40:45:1597:40:1395:-100.06,0,-118.431	0/1:159:64,95:64:2273:95:3352:-252.735,0,-156.961	0/1:51:40,11:40:1421:11:396:-20.6202,0,-112.826	0/1:81:33,48:33:1184:48:1705:-129.236,0,-82.4825	0/1:24:4,20:4:144:20:720:-57.8081,0,-6.0889	1/1:28:0,28:0:0:28:993:-89.5452,-8.42884,0	1/1:209:0,209:0:0:209:7446:-668.686,-62.9153,0	1/1:216:1,215:1:36:215:7675:-683.379,-61.4242,0	0/1:21:12,9:12:432:9:324:-23.1424,0,-32.8996	0/1:169:75,94:75:2670:94:3366:-251.646,0,-189.658	1/1:112:5,107:5:180:107:3799:-322.419,-17.1633,0	1/1:94:0,94:0:0:94:3301:-295.637,-28.2968,0	0/1:8:3,5:3:108:5:180:-14.1204,0,-7.66693	1/1:8:0,8:0:0:8:288:-26.2302,-2.40824,0	1/1:5:0,5:0:0:5:176:-16.1484,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	1/1:15:0,15:0:0:15:540:-48.8135,-4.51545,0	1/1:170:1,169:1:21:169:6008:-538.178,-49.0752,0	1/1:78:0,78:0:0:78:2770:-248.351,-23.4803,0	1/1:41:1,40:1:36:40:1436:-124.484,-8.74396,0	0/1:5:4,1:4:144:1:36:-2.08802,0,-11.8085	0/1:96:46,50:46:1652:50:1777:-130.838,0,-120.056	1/1:30:0,30:0:0:30:1065:-95.7991,-9.0309,0	0/1:116:73,43:73:2582:43:1525:-102.383,0,-197.508	0/1:45:26,19:26:936:19:680:-47.7137,0,-71.0131	1/1:53:0,53:0:0:53:1889:-169.93,-15.9546,0	1/1:114:0,114:0:0:114:4002:-358.468,-34.3174,0	0/1:78:38,40:38:1349:40:1417:-103.577,0,-98.2034	0/1:136:66,70:66:2361:70:2470:-181.323,0,-171.737	0/1:118:43,75:43:1510:75:2677:-205.232,0,-100.665	1/1:117:1,116:1:36:116:4100:-364.118,-31.6248,0	1/1:18:0,18:0:0:18:614:-55.5609,-5.41854,0	1/1:6:0,6:0:0:6:216:-19.691,-1.80618,0	0/1:122:67,55:67:2393:55:1912:-133.673,0,-178.777	1/1:33:0,33:0:0:33:1180:-106.455,-9.93399,0	0/1:7:6,1:6:212:1:36:-1.48202,0,-17.3176	0/1:109:39,70:39:1389:70:2471:-189.264,0,-92.4901	0/1:30:16,14:16:576:14:466:-32.845,0,-43.1394	0/1:5:3,2:3:108:2:72:-5.32966,0,-8.57002	0/1:10:7,3:7:248:3:108:-7.06205,0,-19.653	1/1:58:0,58:0:0:58:2035:-183.023,-17.4597,0	0/1:75:38,37:38:1353:37:1313:-95.6784,0,-99.4865	.:.:.:.:.:.:.:.	0/1:143:47,96:47:1658:96:3368:-259.162,0,-106.454	0/1:107:60,47:60:2141:47:1646:-115.947,0,-160.656	0/1:49:19,30:19:684:30:1061:-80.4206,0,-47.1306	0/1:78:35,43:35:1260:43:1518:-112.844,0,-90.2205	1/1:136:0,135:0:0:135:4796:-430.741,-40.6391,0	0/1:113:71,42:71:2465:42:1489:-99.8078,0,-188.066	0/1:32:20,12:20:712:12:432:-29.5326,0,-54.7737	0/1:55:24,31:24:830:31:1101:-82.5963,0,-58.447	0/1:26:14,12:14:504:12:428:-30.9661,0,-37.8704	1/1:16:0,16:0:0:16:576:-52.1328,-4.81648,0	1/1:128:0,128:0:0:128:4578:-410.658,-38.5318,0	1/1:103:0,103:0:0:103:3651:-325.11,-31.0061,0	1/1:165:0,165:0:0:165:5860:-525.932,-49.67,0	1/1:178:2,175:2:72:175:6224:-552.564,-46.7055,0	0/1:36:15,21:15:540:21:737:-55.284,0,-38.0995	1/1:101:2,99:2:72:99:3488:-305.801,-23.5673,0	0/1:14:4,10:4:144:10:326:-25.3726,0,-9.0992	1/1:128:0,128:0:0:128:4550:-408.004,-38.5318,0	0/1:91:39,52:39:1370:52:1845:-137.805,0,-96.1926	1/1:141:0,141:0:0:141:5022:-450.275,-42.4452,0	0/1:53:23,30:23:828:30:1054:-78.974,0,-58.7984	0/1:60:39,21:39:1396:21:756:-49.9723,0,-107.872	1/1:49:0,49:0:0:49:1756:-157.898,-14.7505,0	0/1:145:92,53:92:3281:53:1904:-127.863,0,-251.847	0/1:25:16,9:16:576:9:320:-21.5451,0,-44.6492	1/1:54:0,54:0:0:54:1940:-173.156,-16.2556,0	1/1:60:0,60:0:0:60:2145:-191.713,-18.0618,0	1/1:27:0,27:0:0:27:938:-84.0177,-8.12781,0	0/1:83:31,52:31:1112:52:1872:-142.499,0,-75.3988	0/1:81:48,33:48:1713:33:1158:-79.9809,0,-130.066	1/1:138:0,138:0:0:138:4859:-436.705,-41.5421,0	1/1:112:0,112:0:0:112:3991:-358.348,-33.7154,0
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chr05	25687802	.	C	T	24397.5	PASS	AB=0.494748;ABP=3.71744;AC=49;AF=0.263441;AN=186;AO=1474;CIGAR=1X;DP=6200;DPB=6200;DPRA=0.909034;EPP=3203.76;EPPR=10261;GTI=3;LEN=1;MEANALT=1.04082;MQM=59.8901;MQMR=59.9141;NS=93;NUMALT=1;ODDS=0.0492813;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52724;QR=169001;RO=4724;RPL=0;RPP=3203.76;RPPR=10261;RPR=1474;RUN=1;SAF=1474;SAP=3203.76;SAR=0;SRF=4724;SRP=10261;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.254	0/1:66:38,28:38:1368:28:1004:-70.8079,0,-103.553	0/0:148:148,0:148:5298:0:0:0,-44.5524,-476.943	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.509	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:96:52,43:52:1853:43:1544:-110.354,0,-138.149	0/0:79:79,0:79:2800:0:0:0,-23.7814,-252.236	0/1:56:25,31:25:896:31:1116:-83.894,0,-64.1027	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.803	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:59:37,22:37:1328:22:788:-53.4631,0,-102.061	0/1:31:17,14:17:608:14:500:-36.0042,0,-45.7201	0/1:71:33,38:33:1188:38:1364:-101.688,0,-85.8555	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:41:19,22:19:684:22:792:-59.2634,0,-49.5481	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:127:68,59:68:2440:59:2104:-151.399,0,-181.624	0/1:83:43,40:43:1527:40:1424:-103.472,0,-112.696	0/1:117:37,80:37:1328:80:2869:-223.137,0,-84.6017	0/1:64:31,33:31:1112:33:1184:-87.6024,0,-81.1254	0/0:74:68,6:68:2436:6:212:0,-2.85142,-200.07	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:214:214,0:214:7688:0:0:0,-64.4204,-691.944	0/0:123:123,0:123:4400:0:0:0,-37.0267,-396.173	0/1:33:16,17:16:572:17:608:-45.118,0,-41.8794	0/1:196:110,86:110:3914:86:3084:-218.73,0,-293.452	0/0:45:45,0:45:1576:0:0:0,-13.5463,-142.128	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.655	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	.:.:.:.:.:.:.:.	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:179:179,0:179:6408:0:0:0,-53.8844,-576.778	0/0:102:102,0:102:3648:0:0:0,-30.7051,-328.391	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:97:48,49:48:1719:49:1735:-127.229,0,-125.79	0/0:24:24,0:24:836:0:0:0,-7.22472,-75.5476	0/1:69:36,33:36:1292:33:1180:-85.737,0,-95.8127	0/1:46:25,21:25:900:21:752:-54.1589,0,-67.4736	0/0:56:56,0:56:1984:0:0:0,-16.8577,-178.832	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:51:29,22:29:1035:22:792:-56.2531,0,-77.6193	0/1:135:79,56:79:2840:56:2016:-141.074,0,-214.42	0/1:98:54,44:54:1936:44:1580:-112.991,0,-144.998	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.686	0/0:170:170,0:170:6087:0:0:0,-51.1751,-547.931	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:109:67,42:67:2395:42:1489:-101.49,0,-182.994	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:7:1,6:1:21:6:216:-17.6906,-0.00726422,0	0/1:78:38,40:38:1355:40:1436:-105.787,0,-98.7694	0/1:36:12,24:12:428:24:860:-66.8824,0,-28.0217	0/1:8:3,5:3:108:5:165:-12.7654,0,-7.66693	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8395	0/1:93:48,45:48:1724:45:1620:-118.094,0,-127.448	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:128:67,61:67:2400:61:2184:-158.29,0,-177.725	0/1:102:48,53:48:1720:53:1900:-140.661,0,-124.468	0/1:41:24,17:24:852:17:608:-42.7098,0,-64.6582	0/1:52:24,28:24:864:28:1000:-74.6618,0,-62.4275	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.948	0/1:60:16,44:16:572:44:1580:-124.43,0,-33.7516	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:70:21,49:21:756:49:1748:-136.532,0,-47.2951	0/1:54:20,34:20:712:34:1216:-93.49,0,-48.151	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.484	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.685	0/0:180:180,0:180:6464:0:0:0,-54.1854,-581.735	0/1:87:39,48:39:1400:48:1712:-128.176,0,-100.11	0/0:86:85,1:85:3044:1:36:0,-22.2903,-270.547	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:150:150,0:150:5376:0:0:0,-45.1545,-483.914	0/1:80:57,23:57:2011:23:813:-49.4067,0,-157.177	0/0:190:190,0:190:6785:0:0:0,-57.1957,-610.707	0/1:65:37,28:37:1332:28:1004:-71.1089,0,-100.613	0/1:48:19,29:19:680:29:1036:-79.1045,0,-47.0797	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:110:47,63:47:1684:63:2240:-167.972,0,-118.734	0/1:41:18,23:18:644:23:828:-62.5019,0,-45.9484	0/0:68:68,0:68:2422:0:0:0,-20.47,-218.235	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.289	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:64:41,23:41:1463:23:813:-54.2232,0,-112.698	0/1:60:25,35:25:865:35:1248:-94.5347,0,-60.1012	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.477
chr05	25687805	.	T	C	96754.2	PASS	AB=0.503575;ABP=3.33635;AC=138;AF=0.741935;AN=186;AO=4669;CIGAR=1X;DP=6146;DPB=6146;DPRA=66.7935;EPP=10124.3;EPPR=3188.56;GTI=2;LEN=1;MEANALT=1.09783;MQM=59.9126;MQMR=59.8937;NS=93;NUMALT=1;ODDS=0.263687;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164776;QR=52216;RO=1467;RPL=1;RPP=10132.9;RPPR=3188.56;RPR=4668;RUN=1;SAF=4668;SAP=10132.9;SAR=1;SRF=1467;SRP=3188.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:75:0,75:0:0:75:2637:-237.551,-22.5773,0	0/1:65:28,37:28:1000:37:1312:-98.8147,0,-70.7484	1/1:145:0,145:0:0:145:5101:-459.234,-43.6494,0	1/1:49:0,49:0:0:49:1728:-155.803,-14.7505,0	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	0/1:95:43,52:43:1536:52:1811:-134.67,0,-109.935	1/1:78:0,78:0:0:78:2750:-247.735,-23.4803,0	0/1:56:32,24:32:1140:24:828:-57.9783,0,-86.0515	1/1:77:0,76:0:0:76:2666:-239.826,-22.8783,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:50:0,50:0:0:50:1752:-157.964,-15.0515,0	0/1:60:22,38:22:784:38:1360:-104.639,0,-52.7963	0/1:30:13,17:13:464:17:596:-44.9369,0,-33.0666	0/1:71:39,32:39:1373:32:1140:-81.5361,0,-102.493	1/1:48:0,48:0:0:48:1704:-153.646,-14.4494,0	0/1:39:21,18:21:756:18:631:-45.3755,0,-56.6271	1/1:35:0,34:0:0:34:1203:-108.254,-10.235,0	1/1:30:0,30:0:0:30:1068:-96.3448,-9.0309,0	0/1:128:60,68:60:2135:68:2400:-177.727,0,-153.886	0/1:82:39,43:39:1380:43:1514:-111.83,0,-99.8143	0/1:118:81,37:81:2899:37:1307:-82.4092,0,-225.249	0/1:62:32,30:32:1140:30:1076:-78.489,0,-84.2453	1/1:73:6,66:6:212:66:2326:-190.175,-2.60824,0	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	1/1:209:0,209:0:0:209:7411:-667.042,-62.9153,0	1/1:121:0,121:0:0:121:4287:-386.012,-36.4246,0	0/1:32:17,15:17:595:15:528:-38.2184,0,-44.2437	0/1:196:86,110:86:3063:110:3871:-289.564,0,-216.842	1/1:43:0,43:0:0:43:1520:-137.093,-12.9443,0	1/1:86:0,86:0:0:86:3047:-274.453,-25.8886,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:239:-21.8427,-2.10721,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:175:0,175:0:0:175:6152:-553.763,-52.6803,0	1/1:100:0,98:0:0:98:3439:-309.358,-29.5009,0	1/1:47:0,47:0:0:47:1663:-149.958,-14.1484,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:96:48,48:48:1715:48:1668:-121.503,0,-125.731	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:68:32,36:32:1136:36:1279:-94.9424,0,-82.0789	0/1:47:22,25:22:780:25:879:-65.2784,0,-56.3746	1/1:56:0,56:0:0:56:1982:-178.653,-16.8577,0	1/1:68:0,68:0:0:68:2408:-216.978,-20.47,0	0/1:51:23,28:23:808:28:991:-73.8797,0,-57.6876	0/1:134:55,79:55:1964:79:2795:-211.224,0,-136.697	0/1:97:42,55:42:1500:55:1890:-141.085,0,-106.095	1/1:72:0,72:0:0:72:2532:-228.132,-21.6742,0	1/1:166:1,165:1:36:165:5802:-518.706,-46.3727,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:108:41,67:41:1460:67:2351:-179.339,0,-99.1848	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:78:39,39:39:1396:39:1395:-102.368,0,-102.459	0/1:36:24,12:24:852:12:419:-27.2056,0,-66.161	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	1/1:23:0,23:0:0:23:811:-73.31,-6.92369,0	0/1:93:45,48:45:1599:48:1699:-125.198,0,-116.204	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:128:59,69:59:2108:69:2432:-180.605,0,-151.456	0/1:101:53,48:53:1888:48:1708:-123.602,0,-139.794	0/1:39:16,23:16:572:23:824:-62.7431,0,-40.0733	0/1:52:28,24:28:1000:24:848:-60.9845,0,-74.6618	1/1:86:0,85:0:0:85:2969:-267.086,-25.5876,0	0/1:60:44,15:44:1561:15:536:-30.4544,0,-122.659	0/1:6:2,4:2:72:4:135:-10.6763,0,-5.03054	0/1:70:49,21:49:1733:21:729:-44.8566,0,-135.18	0/1:54:34,20:34:1208:20:707:-47.699,0,-92.7701	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:55:0,55:0:0:55:1934:-174.335,-16.5567,0	1/1:25:0,25:0:0:25:884:-79.8784,-7.52575,0	1/1:67:0,66:0:0:66:2319:-208.605,-19.868,0	1/1:179:0,179:0:0:179:6367:-573.077,-53.8844,0	0/1:86:47,39:47:1672:39:1356:-96.4469,0,-124.879	1/1:83:1,81:1:32:81:2832:-251.858,-21.825,0	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:150:0,149:0:0:149:5290:-475.868,-44.8535,0	0/1:77:23,54:23:824:54:1912:-149.178,0,-51.304	1/1:195:0,195:0:0:195:6889:-620.083,-58.7009,0	0/1:63:27,36:27:964:36:1276:-96.1782,0,-68.1119	0/1:48:29,19:29:1040:19:676:-46.7186,0,-79.4649	1/1:62:0,62:0:0:62:2192:-197.546,-18.6639,0	0/1:110:64,46:64:2264:46:1601:-111.264,0,-170.13	0/1:41:23,18:23:824:18:640:-45.5871,0,-62.1411	1/1:68:0,68:0:0:68:2419:-217.966,-20.47,0	1/1:59:0,59:0:0:59:2088:-188.173,-17.7608,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:62:23,39:23:815:39:1383:-106.104,0,-55.0069	0/1:61:36,25:36:1272:25:841:-57.6362,0,-96.4085	1/1:85:0,85:0:0:85:3014:-271.492,-25.5876,0	1/1:79:1,78:1:32:78:2779:-247.151,-20.5821,0
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chr05	25700752	.	C	T	267858	PASS	AB=0.48605;ABP=13.7941;AC=141;AF=0.758065;AN=186;AO=10146;CIGAR=1X;DP=13454;DPB=13454;DPRA=0;EPP=4105.15;EPPR=1410.14;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9562;MQMR=59.9982;NS=93;NUMALT=1;ODDS=1.46061;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=363213;QR=118181;RO=3303;RPL=21;RPP=21852.7;RPPR=7054.3;RPR=10125;RUN=1;SAF=7283;SAP=4184.24;SAR=2863;SRF=2397;SRP=1464.52;SRR=906;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	1/1:227:0,227:0:0:227:8122:-730.952,-68.3338,0	0/1:146:63,83:63:2239:83:2965:-223.117,0,-157.823	1/1:252:2,250:2:72:250:8956:-799.183,-69.0228,0	1/1:37:0,36:0:0:36:1296:-116.683,-10.8371,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:303:130,173:130:4644:173:6200:-466.692,0,-326.912	1/1:124:1,123:1:36:123:4393:-391.927,-33.7294,0	0/1:91:36,55:36:1269:55:1980:-151.081,0,-87.117	1/1:116:0,116:0:0:116:4137:-372.513,-34.9195,0	1/1:192:2,190:2:72:190:6792:-604.514,-50.961,0	1/1:128:0,128:0:0:128:4592:-413.444,-38.5318,0	0/1:135:70,65:70:2504:65:2340:-170.22,0,-184.974	0/1:113:56,57:56:2012:57:2012:-147.32,0,-147.337	0/1:194:106,88:106:3804:88:3152:-225.503,0,-284.157	1/1:79:0,79:0:0:79:2827:-254.664,-23.7814,0	0/1:101:45,56:45:1620:56:2001:-149.958,0,-115.686	1/1:97:0,97:0:0:97:3464:-311.973,-29.1999,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	0/1:401:186,213:186:6654:213:7644:-567.523,0,-478.464	0/1:154:87,67:87:3124:67:2400:-169.898,0,-235.027	0/1:120:90,30:90:3198:30:1063:-59.8572,0,-251.918	0/1:181:85,96:85:3040:96:3440:-255.169,0,-219.344	1/1:121:4,117:4:144:117:4208:-365.585,-23.111,0	1/1:68:0,68:0:0:68:2433:-219.224,-20.47,0	1/1:421:0,421:0:0:421:15013:-1350.84,-126.734,0	1/1:220:0,220:0:0:220:7912:-712.1,-66.2266,0	0/1:40:16,24:16:572:24:860:-65.6806,0,-39.7722	0/1:379:175,204:175:6268:204:7307:-543.589,0,-450.123	1/1:86:3,83:3:108:83:2957:-256.287,-15.8134,0	1/1:293:2,291:2:72:291:10424:-931.236,-81.3651,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:14:0,14:0:0:14:504:-45.6935,-4.21442,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:646:0,646:0:0:646:23154:-2083.23,-194.465,0	1/1:59:0,59:0:0:59:2120:-191.06,-17.7608,0	1/1:97:0,97:0:0:97:3464:-311.97,-29.1999,0	.:.:.:.:.:.:.:.	0/1:170:93,77:93:3323:77:2764:-197.826,0,-248.113	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:118:46,72:46:1647:72:2588:-197.647,0,-112.996	0/1:211:111,100:111:3984:100:3575:-258.44,0,-295.232	1/1:157:1,156:1:36:156:5588:-499.438,-43.6634,0	1/1:106:0,106:0:0:106:3800:-342.197,-31.9092,0	0/1:126:63,63:63:2256:63:2264:-166.093,0,-165.373	1/1:193:2,191:2:72:191:6826:-607.572,-51.2621,0	0/1:189:94,95:94:3351:95:3412:-250.399,0,-244.913	1/1:257:3,254:3:108:254:9093:-808.263,-67.2895,0	1/1:192:0,192:0:0:192:6854:-616.429,-57.7978,0	0/1:16:4,12:4:140:12:432:-34.4047,0,-8.1281	0/1:106:62,44:62:2223:44:1580:-110.581,0,-168.424	1/1:87:0,87:0:0:87:3108:-279.948,-26.1896,0	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:99:58,41:58:2080:41:1456:-101.534,0,-157.668	0/1:109:61,48:61:2180:48:1701:-120.562,0,-163.654	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:26:11,15:11:392:15:536:-40.748,0,-27.7933	1/1:88:0,88:0:0:88:3141:-282.91,-26.4906,0	0/1:234:116,118:116:4164:118:4232:-310.618,0,-304.5	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:181:89,92:89:3162:92:3304:-243.092,0,-230.319	0/1:342:200,142:200:7147:142:5084:-354.752,0,-540.336	0/1:45:20,25:20:720:25:900:-67.7747,0,-51.5824	0/1:121:60,61:60:2148:61:2188:-160.761,0,-157.163	1/1:204:3,201:3:108:201:7176:-635.821,-51.335,0	0/1:148:100,48:100:3555:48:1724:-110.893,0,-275.607	0/1:56:31,25:31:1116:25:896:-64.1027,0,-83.894	0/1:79:43,36:43:1539:36:1292:-92.8024,0,-115.021	0/1:217:122,95:122:4376:95:3376:-238.645,0,-328.689	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:94:0,94:0:0:94:3353:-301.977,-28.2968,0	1/1:78:0,78:0:0:78:2808:-252.959,-23.4803,0	1/1:202:0,201:0:0:201:7177:-645.774,-60.507,0	1/1:250:0,250:0:0:250:8957:-805.881,-75.2575,0	0/1:89:46,43:46:1648:43:1540:-112.101,0,-121.817	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	1/1:84:0,84:0:0:84:2997:-269.961,-25.2865,0	0/1:120:66,54:66:2363:54:1929:-137.753,0,-176.804	1/1:426:2,424:2:72:424:15200:-1360.88,-121.402,0	0/1:266:127,139:127:4552:139:4977:-367.996,0,-329.767	0/1:195:104,91:104:3720:91:3268:-235.639,0,-276.301	1/1:232:0,232:0:0:232:8293:-746.345,-69.839,0	0/1:332:169,163:169:6048:163:5833:-425.139,0,-444.482	0/1:49:20,29:20:716:29:1040:-79.1639,0,-50.0172	1/1:161:0,161:0:0:161:5780:-520.313,-48.4658,0	1/1:106:0,106:0:0:106:3789:-341.207,-31.9092,0	1/1:59:0,59:0:0:59:2109:-190.077,-17.7608,0	0/1:108:53,55:53:1899:55:1963:-144.388,0,-138.676	0/1:188:125,63:125:4480:63:2256:-146.709,0,-346.775	1/1:216:1,215:1:36:215:7681:-687.727,-61.4242,0	1/1:295:0,294:0:0:294:10529:-947.156,-88.5028,0
chr05	25700776	.	T	C	346064	PASS	AB=0.48908;ABP=11.2151;AC=141;AF=0.75;AN=188;AO=12832;CIGAR=1X;DP=16918;DPB=16918;DPRA=181.903;EPP=27858.7;EPPR=8853.93;GTI=1;LEN=1;MEANALT=1.06452;MQM=59.9613;MQMR=60;NS=94;NUMALT=1;ODDS=3.47059;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=457159;QR=145955;RO=4080;RPL=7345;RPP=587.197;RPPR=212.911;RPR=5487;RUN=1;SAF=7346;SAP=588.455;SAR=5486;SRF=2355;SRP=214.25;SRR=1725;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:27,24:27:968:24:864:-62.73,0,-72.0848	1/1:341:1,340:1:36:340:12132:-1088.11,-99.053,0	0/1:240:105,135:105:3768:135:4791:-359.087,0,-267.071	1/1:257:2,255:2:72:255:9122:-814.116,-70.528,0	1/1:71:0,71:0:0:71:2529:-227.845,-21.3731,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:302:127,175:127:4501:175:6243:-471.023,0,-314.348	1/1:188:1,187:1:36:187:6631:-593.272,-52.9954,0	0/1:192:101,91:101:3619:91:3260:-235.823,0,-268.117	1/1:115:0,115:0:0:115:4124:-371.344,-34.6185,0	1/1:199:1,198:1:36:198:6989:-625.481,-56.3067,0	1/1:212:0,212:0:0:212:7543:-678.911,-63.8184,0	0/1:234:124,110:124:4436:110:3910:-281.654,0,-328.968	0/1:225:105,120:105:3756:120:4268:-316.562,0,-270.508	0/1:195:107,88:107:3843:88:3142:-224.305,0,-287.363	1/1:157:0,157:0:0:157:5591:-503.311,-47.2617,0	0/1:171:81,90:81:2904:90:3214:-238.006,0,-210.119	1/1:171:0,171:0:0:171:6079:-547.184,-51.4761,0	1/1:106:0,106:0:0:106:3791:-341.388,-31.9092,0	0/1:403:187,216:187:6690:216:7727:-574.148,0,-480.858	0/1:284:152,132:152:5426:132:4706:-338.206,0,-402.978	0/1:120:91,28:91:3238:28:1008:-54.854,0,-255.459	0/1:183:87,96:87:3115:96:3392:-250.35,0,-225.488	1/1:208:11,197:11:392:197:7050:-598.941,-26.9942,0	1/1:121:0,121:0:0:121:4307:-387.807,-36.4246,0	1/1:429:0,429:0:0:429:15295:-1376.25,-129.142,0	1/1:349:0,349:0:0:349:12494:-1124.29,-105.059,0	0/1:81:39,42:39:1400:42:1512:-111.991,0,-101.916	0/1:381:176,205:176:6307:205:7314:-543.616,0,-453.029	1/1:139:4,135:4:144:135:4831:-421.63,-28.5296,0	1/1:299:2,297:2:72:297:10581:-945.37,-83.1712,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	1/1:645:0,645:0:0:645:22955:-2065.34,-194.164,0	1/1:158:0,157:0:0:157:5552:-499.216,-47.2617,0	1/1:182:1,181:1:36:181:6424:-574.652,-51.1892,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:271:128,143:128:4577:143:5086:-376.173,0,-330.515	1/1:117:0,117:0:0:117:4160:-374.583,-35.2205,0	0/1:193:97,96:97:3460:96:3418:-249.735,0,-253.512	0/1:215:115,100:115:4094:100:3556:-255.529,0,-303.925	1/1:156:0,156:0:0:156:5448:-490.45,-46.9607,0	1/1:109:0,109:0:0:109:3878:-349.216,-32.8123,0	0/1:199:94,105:94:3363:105:3759:-278.603,0,-242.981	1/1:199:2,197:2:72:197:7022:-625.206,-53.0682,0	0/1:192:95,97:95:3399:97:3480:-255.613,0,-248.327	1/1:261:3,257:3:108:257:9147:-813.126,-68.5525,0	1/1:197:0,197:0:0:197:6949:-624.202,-59.3029,0	0/1:18:4,14:4:135:14:504:-40.2796,0,-7.06397	0/1:191:112,79:112:4020:79:2832:-197.621,0,-304.491	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	0/1:26:15,11:15:540:11:381:-26.7939,0,-41.1098	0/1:220:115,105:115:4107:105:3701:-267.066,0,-303.589	0/1:112:59,53:59:2116:53:1891:-136.752,0,-156.993	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:26:11,15:11:388:15:540:-41.1098,0,-27.4306	1/1:162:0,162:0:0:162:5770:-519.411,-48.7669,0	0/1:242:122,120:122:4368:120:4296:-313.968,0,-320.445	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:180:87,93:87:3119:93:3303:-243.302,0,-226.75	0/1:347:199,148:199:7094:148:5246:-367.819,0,-534.062	0/1:105:54,51:54:1923:51:1832:-133.553,0,-141.738	0/1:125:60,65:60:2151:65:2324:-171.791,0,-156.228	1/1:211:4,207:4:140:207:7384:-651.661,-50.5728,0	0/1:152:102,50:102:3656:50:1792:-115.806,0,-283.487	0/1:93:47,46:47:1672:46:1640:-119.893,0,-122.771	0/1:128:64,64:64:2304:64:2288:-167.65,0,-169.089	0/1:217:122,95:122:4371:95:3351:-236.484,0,-328.239	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:141:0,141:0:0:141:5023:-452.213,-42.4452,0	1/1:129:0,129:0:0:129:4611:-415.154,-38.8329,0	1/1:345:0,345:0:0:345:12274:-1104.45,-103.855,0	1/1:250:0,250:0:0:250:8952:-805.658,-75.2575,0	0/1:127:73,54:73:2624:54:1940:-136.645,0,-198.176	1/1:160:1,159:1:36:159:5689:-508.529,-44.5665,0	0/1:16:5,11:5:176:11:396:-31.1663,0,-11.3685	1/1:196:0,196:0:0:196:6998:-629.883,-59.0019,0	0/1:197:89,107:89:3175:107:3797:-282.697,0,-226.761	1/1:437:2,435:2:72:435:15533:-1390.84,-124.713,0	0/1:263:125,137:125:4475:137:4885:-360.568,0,-323.69	0/1:198:107,91:107:3848:91:3272:-235.095,0,-286.91	1/1:234:0,234:0:0:234:8300:-747,-70.441,0	0/1:331:167,164:167:5992:164:5848:-426.793,0,-439.743	0/1:86:38,48:38:1355:48:1711:-128.387,0,-96.3611	1/1:242:0,242:0:0:242:8630:-776.698,-72.8493,0	1/1:173:0,173:0:0:173:6159:-554.41,-52.0782,0	1/1:138:0,138:0:0:138:4890:-440.251,-41.5421,0	0/1:172:90,81:90:3219:81:2877:-207.201,0,-238.096	0/1:187:123,64:123:4399:64:2261:-147.457,0,-339.79	1/1:215:1,214:1:36:214:7614:-681.703,-61.1232,0	1/1:303:0,303:0:0:303:10797:-971.635,-91.2121,0
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chr05	25777532	.	T	C	112047	PASS	AB=0.472388;ABP=27.4738;AC=139;AF=0.747312;AN=186;AO=5515;CIGAR=1X;DP=7479;DPB=7479;DPRA=40.6359;EPP=11970;EPPR=4261.27;GTI=1;LEN=1;MEANALT=1.03261;MQM=49.169;MQMR=59.9434;NS=93;NUMALT=1;ODDS=0.907448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194453;QR=69733;RO=1961;RPL=1;RPP=11970;RPPR=4261.27;RPR=5514;RUN=1;SAF=0;SAP=11978.7;SAR=5515;SRF=0;SRP=4261.27;SRR=1961;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:29,39:29:1022:39:1378:-101.976,0,-71.8208	1/1:74:0,74:0:0:74:2618:-233.466,-22.2762,0	0/1:226:97,129:97:3445:129:4600:-341.606,0,-242.222	1/1:199:0,199:0:0:199:7026:-627.773,-59.905,0	1/1:123:0,123:0:0:123:4329:-387.08,-37.0267,0	1/1:44:0,44:0:0:44:1520:-135.812,-13.2453,0	0/1:55:30,25:30:1046:25:856:-60.5147,0,-77.8917	1/1:187:0,187:0:0:187:6562:-583.923,-56.2926,0	0/1:68:31,37:31:1104:37:1285:-94.1504,0,-79.2006	1/1:53:0,53:0:0:53:1896:-169.056,-15.9546,0	1/1:19:0,19:0:0:19:662:-59.6749,-5.71957,0	1/1:92:0,92:0:0:92:3198:-284.582,-27.6948,0	0/1:56:23,33:23:824:33:1171:-87.6622,0,-57.6256	0/1:18:10,8:10:360:8:279:-19.8912,0,-27.3258	0/1:65:35,30:35:1244:30:1055:-74.5364,0,-92.6977	1/1:39:0,39:0:0:39:1370:-122.469,-11.7402,0	0/1:20:6,14:6:212:14:504:-39.2779,0,-13.4042	1/1:23:0,23:0:0:23:811:-72.6786,-6.92369,0	1/1:12:0,12:0:0:12:416:-37.4964,-3.61236,0	0/1:132:68,64:68:2436:64:2274:-163.275,0,-179.759	0/1:178:99,79:99:3505:79:2802:-196.79,0,-262.077	0/1:171:119,52:119:4252:52:1793:-109.742,0,-331.383	0/1:96:63,33:63:2222:33:1168:-76.1806,0,-171.345	1/1:57:1,56:1:36:56:1967:-172.407,-13.5604,0	1/1:85:0,85:0:0:85:3003:-268.432,-25.5876,0	1/1:217:1,216:1:36:216:7637:-682.085,-61.7252,0	1/1:236:0,235:0:0:235:8273:-737.622,-70.7421,0	0/1:19:8,11:8:288:11:388:-29.3638,0,-20.5432	0/1:292:141,150:141:5008:150:5346:-391.988,0,-362.481	1/1:100:3,97:3:108:97:3463:-299.787,-20.0278,0	1/1:41:0,41:0:0:41:1439:-128.884,-12.3422,0	0/1:8:5,3:5:180:3:108:-7.61231,0,-14.1438	0/1:8:3,5:3:104:5:169:-12.7663,0,-7.29457	1/1:9:0,9:0:0:9:324:-28.9024,-2.70927,0	1/1:5:0,5:0:0:5:172:-15.7075,-1.50515,0	1/1:13:0,13:0:0:13:455:-40.9525,-3.91339,0	1/1:140:1,139:1:32:139:4944:-438.963,-38.9453,0	1/1:191:1,190:1:36:190:6730:-597.703,-53.8985,0	1/1:20:0,20:0:0:20:712:-63.8129,-6.0206,0	.:.:.:.:.:.:.:.	0/1:134:77,57:77:2731:57:2023:-140.431,0,-205.696	1/1:32:0,32:0:0:32:1131:-100.5,-9.63296,0	0/1:232:124,108:124:4405:108:3819:-269.76,0,-326.736	0/1:37:17,20:17:603:20:707:-52.426,0,-43.4614	1/1:40:0,40:0:0:40:1427:-128.208,-12.0412,0	1/1:110:0,110:0:0:110:3826:-343.121,-33.1133,0	0/1:190:101,88:101:3571:88:3116:-219.404,0,-264.331	1/1:175:2,173:2:72:173:6133:-542.777,-45.8435,0	0/1:64:36,28:36:1288:28:996:-70.2953,0,-96.9577	1/1:109:1,108:1:36:108:3797:-336.468,-29.214,0	1/1:107:0,107:0:0:107:3780:-339.726,-32.2102,0	1/1:1:0,1:0:0:1:32:-3.19457,-0.30103,0	0/1:116:62,54:62:2220:54:1920:-135.664,0,-165.145	1/1:18:0,18:0:0:18:607:-54.8839,-5.41854,0	0/1:5:3,2:3:104:2:72:-5.27179,0,-8.19766	0/1:135:70,65:70:2478:65:2293:-163.798,0,-182.634	0/1:65:25,40:25:896:40:1408:-106.588,0,-61.3934	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:50:0,50:0:0:50:1715:-153.898,-15.0515,0	0/1:69:39,30:39:1395:30:1063:-74.9113,0,-105.077	0/1:5:3,2:3:108:2:72:-5.30917,0,-8.57002	0/1:158:82,76:82:2928:76:2679:-193.053,0,-216.192	0/1:104:50,54:50:1775:54:1892:-138.718,0,-128.725	0/1:30:11,19:11:396:19:659:-50.1827,0,-26.9518	0/1:115:54,61:54:1923:61:2168:-159.73,0,-138.728	1/1:152:0,152:0:0:152:5336:-478.111,-45.7566,0	0/1:90:64,26:64:2283:26:915:-54.9386,0,-178.552	0/1:10:9,1:9:320:1:36:-0.568467,0,-26.1321	0/1:66:38,28:38:1344:28:985:-67.4209,0,-101.389	0/1:27:15,12:15:536:12:424:-30.2731,0,-40.447	1/1:6:0,6:0:0:6:192:-17.5475,-1.80618,0	1/1:143:0,143:0:0:143:5042:-448.933,-43.0473,0	1/1:42:0,42:0:0:42:1479:-131.97,-12.6433,0	1/1:52:0,52:0:0:52:1836:-163.217,-15.6536,0	1/1:151:0,151:0:0:151:5343:-478.713,-45.4555,0	0/1:90:47,43:47:1650:43:1511:-107.574,0,-121.694	1/1:60:2,58:2:72:58:2018:-173.445,-11.2251,0	0/1:13:6,7:6:216:7:252:-17.8232,0,-15.8771	1/1:81:0,81:0:0:81:2871:-257.077,-24.3834,0	0/1:145:78,67:78:2789:67:2342:-164.411,0,-207.599	1/1:235:0,235:0:0:235:8251:-739.112,-70.7421,0	0/1:59:28,31:28:991:31:1096:-80.5995,0,-71.7428	0/1:42:17,25:17:608:25:892:-66.9516,0,-42.4088	1/1:42:0,42:0:0:42:1463:-131.374,-12.6433,0	0/1:102:57,45:57:2044:45:1584:-111.62,0,-153.527	0/1:17:8,9:8:284:9:316:-23.4303,0,-20.7858	1/1:55:0,55:0:0:55:1934:-171.672,-16.5567,0	1/1:43:0,43:0:0:43:1519:-134.894,-12.9443,0	1/1:10:0,10:0:0:10:360:-32.5668,-3.0103,0	0/1:33:16,17:16:572:17:608:-44.5993,0,-41.8794	0/1:58:41,17:41:1451:17:583:-35.1914,0,-113.425	1/1:24:0,24:0:0:24:860:-77.085,-7.22472,0	1/1:66:0,66:0:0:66:2331:-209.208,-19.868,0
chr05	25777558	.	C	T	119052	PASS	AB=0.475506;ABP=22.5836;AC=139;AF=0.747312;AN=186;AO=5652;CIGAR=1X;DP=7638;DPB=7638;DPRA=41.5;EPP=12008.4;EPPR=4194.69;GTI=1;LEN=1;MEANALT=1.04348;MQM=49.1888;MQMR=59.9596;NS=93;NUMALT=1;ODDS=1.41639;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202224;QR=70901;RO=1982;RPL=31;RPP=12008.4;RPPR=4194.69;RPR=5621;RUN=1;SAF=0;SAP=12276.2;SAR=5652;SRF=0;SRP=4306.87;SRR=1982;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:28,41:28:1000:41:1472:-110.005,0,-69.5443	1/1:78:0,78:0:0:78:2793:-248.921,-23.4803,0	0/1:231:97,134:97:3484:134:4798:-357.511,0,-244.224	1/1:204:0,204:0:0:204:7319:-653.579,-61.4101,0	1/1:124:0,124:0:0:124:4444:-397.195,-37.3277,0	1/1:44:0,44:0:0:44:1582:-141.208,-13.2453,0	0/1:55:30,25:30:1072:25:892:-63.5463,0,-80.2358	1/1:193:0,192:0:0:192:6841:-607.873,-57.7978,0	0/1:68:31,37:31:1116:37:1332:-98.2119,0,-80.2817	1/1:54:0,54:0:0:54:1921:-171.37,-16.2556,0	1/1:19:0,19:0:0:19:665:-59.897,-5.71957,0	1/1:96:0,96:0:0:96:3442:-306.137,-28.8989,0	0/1:53:23,30:23:813:30:1080:-80.2477,0,-57.5345	0/1:17:9,8:9:309:8:288:-20.9966,0,-23.0232	0/1:66:36,30:36:1283:30:1072:-76.0159,0,-95.9046	1/1:40:0,40:0:0:40:1440:-128.602,-12.0412,0	0/1:20:6,14:6:216:14:504:-39.2779,0,-13.7699	1/1:23:0,23:0:0:23:824:-73.7961,-6.92369,0	1/1:12:0,12:0:0:12:432:-38.8783,-3.61236,0	0/1:131:67,64:67:2408:64:2296:-165.567,0,-177.541	0/1:175:98,77:98:3520:77:2744:-192.71,0,-264.328	0/1:175:122,53:122:4352:53:1900:-117.66,0,-339.173	0/1:97:62,35:62:2212:35:1252:-83.3796,0,-170.145	1/1:60:1,59:1:36:59:2116:-185.859,-14.4635,0	1/1:87:0,87:0:0:87:3123:-279.104,-26.1896,0	1/1:227:1,226:1:32:226:8054:-719.796,-65.1345,0	1/1:243:1,242:1:36:242:8688:-770.53,-69.552,0	0/1:19:8,11:8:288:11:396:-30.0681,0,-20.5478	0/1:287:137,150:137:4893:150:5365:-395.319,0,-354.124	1/1:103:3,100:3:108:100:3564:-308.632,-20.9309,0	1/1:40:0,40:0:0:40:1422:-127.521,-12.0412,0	0/1:8:5,3:5:180:3:108:-7.61231,0,-14.1438	0/1:9:4,5:4:144:5:180:-13.1897,0,-10.6043	1/1:9:0,9:0:0:9:316:-28.2093,-2.70927,0	1/1:5:0,5:0:0:5:180:-16.4073,-1.50515,0	1/1:13:0,13:0:0:13:468:-42.0884,-3.91339,0	1/1:146:2,144:2:72:144:5176:-455.723,-37.1146,0	1/1:192:0,191:0:0:191:6842:-610.688,-57.4967,0	1/1:21:0,21:0:0:21:756:-67.7114,-6.32163,0	.:.:.:.:.:.:.:.	0/1:136:76,60:76:2724:60:2136:-149.855,0,-204.458	1/1:32:0,32:0:0:32:1148:-101.956,-9.63296,0	0/1:224:120,104:120:4312:104:3716:-262.992,0,-320.824	0/1:37:17,20:17:597:20:720:-53.5846,0,-42.918	1/1:44:0,44:0:0:44:1580:-141.781,-13.2453,0	1/1:114:0,114:0:0:114:4088:-365.777,-34.3174,0	0/1:199:105,94:105:3763:94:3319:-235.612,0,-278.947	1/1:178:1,177:1:36:177:6344:-564.756,-49.9851,0	0/1:68:39,29:39:1396:29:1040:-73.0204,0,-105.469	1/1:110:0,110:0:0:110:3956:-354.28,-33.1133,0	1/1:108:0,108:0:0:108:3872:-347.74,-32.5112,0	1/1:1:0,1:0:0:1:36:-3.58648,-0.30103,0	0/1:119:65,54:65:2328:54:1928:-135.447,0,-173.957	1/1:18:0,18:0:0:18:648:-58.5687,-5.41854,0	0/1:5:2,3:2:72:3:108:-8.0038,0,-5.33157	0/1:141:72,69:72:2588:69:2440:-174.601,0,-190.723	0/1:70:28,42:28:989:42:1508:-113.515,0,-68.2499	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:50:0,50:0:0:50:1796:-161.015,-15.0515,0	0/1:71:39,32:39:1391:32:1152:-82.2445,0,-104.115	0/1:5:3,2:3:108:2:72:-5.30917,0,-8.57002	0/1:161:82,79:82:2929:79:2828:-205.404,0,-215.377	0/1:108:52,56:52:1860:56:1995:-146.316,0,-135.168	0/1:32:11,21:11:392:21:744:-57.1526,0,-25.9871	0/1:124:57,67:57:2052:67:2408:-178.475,0,-147.624	1/1:158:0,157:0:0:157:5620:-502.899,-47.2617,0	0/1:92:65,27:65:2324:27:958:-58.1753,0,-181.725	0/1:10:9,1:9:316:1:36:-0.568467,0,-25.7686	0/1:69:40,29:40:1423:29:1040:-71.3981,0,-107.596	0/1:30:16,14:16:567:14:500:-36.1291,0,-42.3297	1/1:6:0,6:0:0:6:212:-19.3593,-1.80618,0	1/1:147:0,147:0:0:147:5260:-468.158,-44.2514,0	1/1:46:0,46:0:0:46:1640:-146.271,-13.8474,0	1/1:56:0,56:0:0:56:2000:-177.651,-16.8577,0	1/1:153:0,153:0:0:153:5484:-490.265,-46.0576,0	0/1:92:48,44:48:1715:44:1569:-112.062,0,-126.937	1/1:61:2,59:2:72:59:2102:-180.895,-11.5261,0	0/1:13:6,7:6:216:7:252:-17.8232,0,-15.8771	1/1:83:0,83:0:0:83:2949:-263.967,-24.9855,0	0/1:144:77,66:77:2764:66:2339:-164.597,0,-205.735	1/1:240:0,240:0:0:240:8579:-767.033,-72.2472,0	0/1:59:29,30:29:1025:30:1076:-78.7875,0,-74.7999	0/1:45:19,26:19:684:26:936:-69.9957,0,-48.344	1/1:40:0,40:0:0:40:1432:-128.609,-12.0412,0	0/1:106:58,48:58:2073:48:1724:-122.894,0,-154.93	0/1:17:8,9:8:288:9:324:-24.1137,0,-21.1499	1/1:56:0,56:0:0:56:2004:-177.771,-16.8577,0	1/1:43:0,43:0:0:43:1544:-137.139,-12.9443,0	1/1:10:0,10:0:0:10:360:-32.5668,-3.0103,0	0/1:34:16,18:16:567:18:644:-46.8959,0,-41.1257	0/1:62:45,17:45:1612:17:612:-36.561,0,-126.434	1/1:25:0,25:0:0:25:896:-80.3327,-7.52575,0	1/1:68:0,68:0:0:68:2427:-217.709,-20.47,0
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chr05	25994245	.	G	A	123638	PASS	AB=0.47367;ABP=25.0799;AC=141;AF=0.75;AN=188;AO=5835;CIGAR=1X;DP=7788;DPB=7788;DPRA=0;EPP=12457.3;EPPR=4198.37;GTI=0;LEN=1;MEANALT=1.05319;MQM=49.9362;MQMR=52.7521;NS=94;NUMALT=1;ODDS=0.25493;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208878;QR=69610;RO=1948;RPL=5810;RPP=12457.3;RPPR=4198.37;RPR=25;RUN=1;SAF=5835;SAP=12673.6;SAR=0;SRF=1948;SRP=4233.04;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:15,16:15:536:16:567:-41.9003,0,-39.1809	1/1:139:0,139:0:0:139:4996:-448.326,-41.8432,0	0/1:162:81,80:81:2891:80:2864:-208.365,0,-211.249	1/1:202:1,201:1:36:201:7220:-642.505,-57.2188,0	1/1:71:0,71:0:0:71:2537:-227.686,-21.3731,0	1/1:59:0,59:0:0:59:2112:-189.756,-17.7608,0	0/1:99:41,58:41:1472:58:2083:-156.948,0,-102.636	1/1:139:0,139:0:0:139:4958:-444.778,-41.8432,0	0/1:40:20,20:20:720:20:720:-52.4178,0,-52.9877	1/1:93:0,93:0:0:93:3332:-298.201,-27.9958,0	1/1:22:0,22:0:0:22:781:-69.8274,-6.62266,0	1/1:27:0,27:0:0:27:972:-87.5496,-8.12781,0	0/1:31:16,15:16:568:15:529:-38.4454,0,-42.0533	0/1:46:27,19:27:959:19:684:-47.7833,0,-72.627	0/1:36:18,18:18:648:18:648:-47.5126,0,-47.6668	1/1:32:0,32:0:0:32:1152:-103.56,-9.63296,0	0/1:42:23,19:23:824:19:680:-48.7044,0,-61.7144	1/1:24:0,24:0:0:24:860:-77.4818,-7.22472,0	1/1:7:0,7:0:0:7:248:-22.6059,-2.10721,0	0/1:188:111,76:111:3984:76:2716:-186.177,0,-301.214	0/1:76:39,37:39:1381:37:1332:-96.8115,0,-101.499	0/1:120:69,51:69:2463:51:1809:-126.091,0,-185.148	0/1:28:10,18:10:360:18:648:-49.9145,0,-23.3772	1/1:78:5,73:5:180:73:2608:-217.146,-6.9598,0	1/1:81:0,81:0:0:81:2877:-258.104,-24.3834,0	1/1:315:0,315:0:0:315:11273:-1009.23,-94.8245,0	1/1:180:0,180:0:0:180:6412:-574.586,-54.1854,0	0/1:24:13,11:13:451:11:381:-27.2571,0,-33.6293	0/1:271:164,107:164:5880:107:3844:-262.712,0,-446.095	1/1:142:6,136:6:216:136:4866:-416.565,-22.9872,0	1/1:121:0,121:0:0:121:4339:-388.219,-36.4246,0	0/1:9:7,1:7:248:1:36:-0.816505,0,-19.8429	1/1:7:0,7:0:0:7:252:-22.9276,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.4092,-2.70927,0	1/1:9:0,9:0:0:9:320:-29.0653,-2.70927,0	1/1:16:0,16:0:0:16:576:-50.9075,-4.81648,0	1/1:87:0,87:0:0:87:3117:-278.941,-26.1896,0	1/1:254:0,254:0:0:254:9107:-816.174,-76.4616,0	1/1:30:0,30:0:0:30:1072:-96.4881,-9.0309,0	0/1:3:2,1:2:68:1:36:-2.67996,0,-5.5436	0/1:101:51,50:51:1832:50:1779:-129.092,0,-134.452	1/1:27:0,27:0:0:27:968:-87.0616,-8.12781,0	0/1:119:60,59:60:2152:59:2107:-152.485,0,-157.781	0/1:28:6,22:6:216:22:792:-62.7569,0,-11.3222	1/1:20:0,20:0:0:20:716:-64.4428,-6.0206,0	1/1:71:0,71:0:0:71:2548:-228.027,-21.3731,0	0/1:115:51,64:51:1808:64:2296:-171.623,0,-128.166	1/1:207:3,204:3:108:204:7303:-643.736,-52.2634,0	0/1:118:69,49:69:2476:49:1756:-121.927,0,-187.031	1/1:117:1,116:1:36:116:4158:-368.834,-31.6313,0	1/1:193:1,192:1:36:192:6890:-613.274,-54.5123,0	0/1:11:6,5:6:216:5:180:-13.129,0,-16.4294	0/1:204:116,88:116:4151:88:3160:-222.072,0,-311.862	1/1:65:0,65:0:0:65:2326:-207.518,-19.567,0	0/1:21:7,14:7:252:14:500:-38.8737,0,-16.6747	0/1:118:60,58:60:2143:58:2062:-149.648,0,-157.274	0/1:32:10,22:10:356:22:773:-59.9312,0,-22.6575	0/1:4:1,3:1:36:3:104:-8.45491,0,-2.38236	0/1:24:11,13:11:396:13:468:-35.0142,0,-28.635	1/1:98:0,98:0:0:98:3524:-316.019,-29.5009,0	0/1:108:50,58:50:1781:58:2084:-154.311,0,-127.637	0/1:5:1,4:1:36:4:144:-11.7543,0,-2.08408	0/1:218:116,101:116:4148:101:3632:-259.682,0,-306.711	0/1:201:110,91:110:3940:91:3258:-231.393,0,-293.409	0/1:60:32,28:32:1152:28:1008:-72.5894,0,-85.7319	0/1:74:32,41:32:1144:41:1464:-109.046,0,-80.6844	1/1:118:2,116:2:72:116:4146:-364.538,-28.6934,0	0/1:163:107,56:107:3801:56:2008:-130.943,0,-292.348	0/1:13:9,4:9:300:4:144:-9.34389,0,-23.3704	0/1:96:56,40:56:2008:40:1425:-99.2726,0,-151.838	0/1:81:35,46:35:1239:46:1641:-122.459,0,-87.0913	1/1:46:0,46:0:0:46:1652:-148.204,-13.8474,0	1/1:122:0,122:0:0:122:4373:-392.483,-36.7257,0	1/1:36:0,36:0:0:36:1296:-116.54,-10.8371,0	1/1:121:3,118:3:108:118:4219:-367.936,-26.3686,0	1/1:123:0,123:0:0:123:4420:-395.597,-37.0267,0	0/1:151:77,74:77:2739:74:2643:-191.945,0,-200.977	1/1:83:1,82:1:36:82:2925:-258.696,-21.3923,0	0/1:5:2,3:2:68:3:93:-7.14922,0,-4.94577	1/1:117:0,117:0:0:117:4189:-375.195,-35.2205,0	0/1:133:51,82:51:1828:82:2940:-223.944,0,-124.53	1/1:189:0,189:0:0:189:6740:-603.526,-56.8947,0	0/1:69:45,24:45:1605:24:864:-56.9204,0,-123.623	0/1:27:13,14:13:459:14:504:-36.7082,0,-33.4	1/1:21:0,21:0:0:21:752:-67.6661,-6.32163,0	0/1:68:32,36:32:1148:36:1288:-95.1319,0,-82.8938	0/1:26:17,9:17:612:9:324:-21.5812,0,-47.5066	1/1:41:0,41:0:0:41:1448:-129.89,-12.3422,0	1/1:18:0,18:0:0:18:644:-58.1013,-5.41854,0	1/1:26:0,26:0:0:26:932:-83.872,-7.82678,0	0/1:40:15,25:15:540:25:888:-67.8825,0,-36.8021	0/1:26:20,6:20:711:6:216:-11.8564,0,-56.3427	1/1:83:0,83:0:0:83:2980:-267.062,-24.9855,0	1/1:37:1,36:1:36:36:1296:-112.712,-7.54888,0
chr05	26141774	.	T	C	122250	PASS	AB=0.502046;ABP=3.13467;AC=143;AF=0.760638;AN=188;AO=5760;CIGAR=1X;DP=7479;DPB=7479;DPRA=0;EPP=12510.7;EPPR=3733.6;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.922;MQMR=59.9971;NS=94;NUMALT=1;ODDS=0.43807;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205990;QR=61585;RO=1718;RPL=0;RPP=12510.7;RPPR=3733.6;RPR=5760;RUN=1;SAF=5760;SAP=12510.7;SAR=0;SRF=1718;SRP=3733.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	1/1:68:1,67:1:36:67:2384:-211.131,-16.8718,0	0/1:112:60,52:60:2133:52:1857:-133.655,0,-158.521	1/1:204:0,204:0:0:204:7280:-655.228,-61.4101,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:69:38,31:38:1368:31:1100:-78.5392,0,-102.65	1/1:96:0,96:0:0:96:3416:-307.653,-28.8989,0	0/1:89:45,44:45:1620:44:1576:-115.34,0,-119.298	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:111:0,111:0:0:111:3974:-357.845,-33.4143,0	0/1:103:54,49:54:1932:49:1755:-127.227,0,-143.15	0/1:39:18,21:18:644:21:752:-56.2661,0,-46.5504	0/1:87:50,37:50:1796:37:1328:-93.6326,0,-135.733	1/1:60:0,60:0:0:60:2156:-194.302,-18.0618,0	0/1:28:12,16:12:428:16:568:-43.023,0,-30.43	1/1:41:0,41:0:0:41:1464:-132.045,-12.3422,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:162:83,79:83:2964:79:2835:-205.844,0,-218.223	0/1:179:66,113:66:2368:113:4027:-308.666,0,-159.494	0/1:76:53,23:53:1892:23:824:-51.605,0,-147.68	0/1:140:64,76:64:2289:76:2716:-202.537,0,-164.125	1/1:45:4,41:4:144:41:1464:-118.742,-0.232733,0	1/1:50:1,49:1:36:49:1752:-154.363,-11.4532,0	1/1:196:0,196:0:0:196:6986:-628.575,-59.0019,0	1/1:217:0,217:0:0:217:7744:-696.993,-65.3235,0	0/1:39:15,24:15:540:24:856:-65.6209,0,-37.1964	0/1:197:91,106:91:3260:106:3812:-283.971,0,-234.318	1/1:71:1,70:1:36:70:2508:-222.374,-17.7749,0	1/1:100:0,100:0:0:100:3586:-322.946,-30.103,0	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:260:131,129:131:4712:129:4624:-338.055,0,-345.969	1/1:116:0,116:0:0:116:4152:-373.844,-34.9195,0	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:93:35,58:35:1260:58:2080:-159.474,0,-85.7097	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:87:44,43:44:1572:43:1548:-113.423,0,-115.582	0/1:62:32,30:32:1148:30:1080:-78.8494,0,-84.966	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:73:0,73:0:0:73:2595:-233.796,-21.9752,0	0/1:47:24,23:24:864:23:819:-59.8785,0,-63.9342	1/1:141:0,141:0:0:141:5033:-453.102,-42.4452,0	0/1:66:38,28:38:1360:28:1004:-70.8079,0,-102.833	1/1:103:0,103:0:0:103:3688:-332.123,-31.0061,0	1/1:200:0,200:0:0:200:7153:-643.826,-60.206,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:109:45,64:45:1612:64:2300:-174.449,0,-112.558	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:147:1,146:1:36:146:5184:-463.099,-40.6531,0	0/1:57:21,36:21:756:36:1280:-98.3445,0,-51.2085	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:90:36,54:36:1292:54:1944:-148.13,0,-89.4911	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:245:118,127:118:4248:127:4548:-335.462,0,-308.744	0/1:147:89,58:89:3192:58:2078:-143.039,0,-243.252	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:63:29,34:29:1044:34:1208:-90.0566,0,-75.3099	1/1:155:2,153:2:72:153:5479:-486.386,-39.8229,0	1/1:128:0,128:0:0:128:4565:-411.016,-38.5318,0	0/1:22:6,16:6:216:16:551:-43.2903,0,-13.1679	0/1:40:22,18:22:788:18:644:-46.2494,0,-59.2036	0/1:57:29,28:29:1035:28:1008:-73.8776,0,-76.3044	1/1:16:0,16:0:0:16:564:-51.0756,-4.81648,0	1/1:87:0,87:0:0:87:3112:-280.307,-26.1896,0	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	1/1:162:0,161:0:0:161:5780:-520.073,-48.4658,0	1/1:148:0,148:0:0:148:5304:-477.493,-44.5524,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:73:1,72:1:36:72:2592:-229.929,-18.3769,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:83:0,83:0:0:83:2963:-266.903,-24.9855,0	0/1:63:43,20:43:1532:20:708:-45.0761,0,-119.208	1/1:205:3,202:3:108:202:7203:-638.092,-51.636,0	0/1:57:29,28:29:1040:28:1004:-73.5172,0,-76.7557	0/1:55:31,24:31:1108:24:855:-60.7135,0,-83.4743	1/1:69:0,69:0:0:69:2451:-220.526,-20.7711,0	0/1:129:71,58:71:2532:58:2073:-148.003,0,-189.296	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	0/1:79:45,34:45:1620:34:1216:-85.9652,0,-122.309	1/1:29:0,29:0:0:29:1040:-93.9128,-8.72987,0	0/1:67:28,39:28:1004:39:1396:-105.77,0,-70.5069	0/1:69:37,32:37:1328:32:1136:-81.7778,0,-99.0512	1/1:179:0,179:0:0:179:6401:-576.173,-53.8844,0	1/1:113:0,113:0:0:113:4052:-364.866,-34.0164,0
chr05	26421340	.	T	C	35592.8	PASS	AB=0.320291;ABP=2390.45;AC=95;AF=0.505319;AN=188;AO=2750;CIGAR=1X;DP=8643;DPB=8643;DPRA=92.9247;EPP=5974.56;EPPR=12665.2;GTI=20;LEN=1;MEANALT=1.02151;MQM=53.9927;MQMR=59.925;NS=94;NUMALT=1;ODDS=0.156556;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98310;QR=210076;RO=5891;RPL=0;RPP=5974.56;RPPR=12777.8;RPR=2750;RUN=1;SAF=2750;SAP=5974.56;SAR=0;SRF=17;SRP=12647.9;SRR=5874;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:37,12:37:1328:12:432:-24.4151,0,-105.072	0/1:152:128,24:128:4563:24:860:-31.8573,0,-365.078	0/1:57:38,19:38:1345:19:676:-43.9271,0,-104.189	0/1:234:192,42:192:6867:42:1492:-63.9539,0,-547.658	0/1:34:17,17:17:608:17:612:-45.0998,0,-44.817	0/1:32:18,14:18:648:14:504:-36.0003,0,-49.0189	0/1:117:80,37:80:2842:37:1324:-84.0767,0,-220.798	0/1:171:127,44:127:4526:44:1547:-87.8674,0,-355.332	0/1:104:88,16:88:3148:16:572:-20.4351,0,-252.238	0/1:75:49,26:49:1752:26:936:-61.8607,0,-135.387	0/1:60:50,10:50:1787:10:360:-14.6361,0,-143.05	0/1:97:68,29:68:2420:29:1032:-63.8694,0,-188.857	0/1:87:70,17:70:2478:17:612:-29.1452,0,-196.383	0/1:85:66,19:66:2355:19:680:-35.8566,0,-186.62	0/1:100:74,26:74:2643:26:924:-53.2599,0,-208.013	0/1:48:39,9:39:1369:9:324:-15.0146,0,-109.057	0/1:85:69,16:69:2447:16:568:-25.7959,0,-194.197	0/1:67:58,9:58:2062:9:315:-8.48044,0,-165.681	0/1:53:47,6:47:1642:6:216:-3.80786,0,-132.112	0/1:237:130,107:130:4664:107:3836:-273.608,0,-348.205	0/1:154:126,28:126:4490:28:1008:-44.5486,0,-357.911	0/1:63:15,48:15:536:48:1712:-135.191,0,-29.6099	0/1:67:53,14:53:1896:14:504:-25.4643,0,-150.749	0/1:75:42,33:42:1495:33:1180:-83.7827,0,-112.267	0/1:103:68,35:68:2436:35:1248:-81.4658,0,-188.489	0/1:240:107,133:107:3804:133:4768:-356.43,0,-270.309	0/1:165:93,72:93:3317:72:2572:-181.734,0,-249.077	0/1:43:31,12:31:1095:12:432:-26.2213,0,-85.9144	0/1:424:339,85:339:12159:85:3033:-145.184,0,-966.511	0/1:96:61,35:61:2164:35:1260:-84.6422,0,-166.128	0/1:54:29,25:29:1036:25:888:-63.8764,0,-77.2983	0/1:5:3,2:3:108:2:72:-5.32188,0,-8.57002	0/1:7:5,2:5:176:2:72:-4.71982,0,-14.0778	0/1:2:1,1:1:36:1:36:-2.99111,0,-2.99621	0/1:9:6,3:6:212:3:108:-7.35161,0,-16.7155	0/1:9:6,3:6:212:3:108:-7.35161,0,-16.7155	0/1:221:147,74:147:5260:74:2642:-171.167,0,-407.009	0/1:150:51,99:51:1793:99:3528:-272.151,0,-116.496	0/1:49:29,20:29:1027:20:716:-49.9277,0,-77.9917	0/1:5:2,3:2:72:3:108:-8.55573,0,-5.33157	0/1:156:123,33:123:4375:33:1184:-59.7584,0,-346.966	0/1:37:23,14:23:815:14:504:-34.4952,0,-62.5327	0/1:116:65,51:65:2320:51:1820:-128.938,0,-172.778	0/1:49:38,11:38:1360:11:392:-20.8198,0,-107.95	0/1:73:59,14:59:2090:14:504:-23.6581,0,-166.389	0/1:81:43,38:43:1536:38:1360:-98.1477,0,-114.15	0/1:74:41,33:41:1464:33:1184:-84.4428,0,-109.78	0/1:128:78,50:78:2788:50:1788:-122.449,0,-212.629	0/1:131:89,41:89:3188:41:1468:-92.7381,0,-247.65	0/1:137:111,26:111:3968:26:932:-42.839,0,-316.07	0/1:191:114,77:114:4059:77:2756:-190.441,0,-308.002	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:88:61,27:61:2169:27:964:-60.4666,0,-168.98	0/1:14:5,9:5:180:9:320:-24.8889,0,-12.3376	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	0/1:66:44,22:44:1567:22:792:-51.6362,0,-121.453	0/1:24:14,10:14:500:10:360:-25.4732,0,-38.1115	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:12:1,11:1:36:11:388:-31.6136,-0.0140851,0	0/1:67:46,21:46:1635:21:752:-47.7431,0,-127.269	0/1:128:79,49:79:2820:49:1747:-118.766,0,-215.508	0/1:9:5,4:5:180:4:144:-10.5855,0,-13.8428	0/1:115:60,55:60:2152:55:1956:-141.461,0,-159.324	0/1:162:102,60:102:3642:60:2136:-143.48,0,-279.217	0/1:63:53,10:53:1868:10:360:-13.733,0,-149.431	0/1:79:61,18:61:2184:18:644:-34.4282,0,-173.045	0/1:171:131,40:131:4644:40:1431:-77.4305,0,-365.912	0/1:38:22,16:22:792:16:564:-39.5855,0,-60.1665	0/1:35:29,6:29:1031:6:216:-9.2264,0,-82.5666	0/1:69:57,12:57:2044:12:424:-17.6753,0,-162.76	0/1:137:89,48:89:3145:48:1703:-112.108,0,-242.035	0/1:30:23,7:23:820:7:248:-13.6034,0,-65.0916	0/1:123:64,59:64:2288:59:2112:-153.059,0,-169.155	0/1:41:18,23:18:640:23:820:-61.6797,0,-45.5871	0/1:174:118,56:118:4232:56:2004:-128.005,0,-328.679	0/1:172:142,30:142:5069:30:1076:-45.237,0,-403.792	0/1:131:94,37:94:3332:37:1320:-79.5043,0,-260.659	0/0:115:106,9:106:3792:9:320:0,-5.51514,-312.375	0/1:6:4,2:4:144:2:72:-5.02085,0,-11.5074	0/1:139:101,38:101:3594:38:1364:-81.0453,0,-281.819	0/1:87:64,23:64:2292:23:828:-48.5468,0,-180.352	0/1:295:158,137:158:5635:137:4916:-353.166,0,-418.469	0/1:136:86,50:86:3076:50:1784:-119.682,0,-236.129	0/1:69:54,15:54:1935:15:532:-27.3782,0,-153.655	0/1:63:49,14:49:1764:14:504:-26.6684,0,-140.079	0/1:154:127,27:127:4517:27:968:-40.957,0,-359.152	0/1:58:39,19:39:1383:19:684:-44.3428,0,-106.991	0/1:69:39,30:39:1388:30:1076:-76.2463,0,-104.448	0/1:78:57,21:57:2015:21:756:-44.7899,0,-158.142	0/1:26:17,9:17:608:9:320:-21.2765,0,-47.2252	0/1:52:27,25:27:955:25:896:-65.1942,0,-69.9085	0/1:43:24,19:24:839:19:672:-47.7831,0,-62.883	0/1:127:96,31:96:3440:31:1096:-60.5879,0,-271.582	0/1:115:81,33:81:2912:33:1188:-72.5448,0,-227.785
chr05	26421361	.	C	G	35396.4	PASS	AB=0.317374;ABP=2495.84;AC=95;AF=0.505319;AN=188;AO=2755;CIGAR=1X;DP=8741;DPB=8741;DPRA=93.9785;EPP=5985.42;EPPR=12906.1;GTI=19;LEN=1;MEANALT=1;MQM=54.0029;MQMR=59.9414;NS=94;NUMALT=1;ODDS=0.865453;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98485;QR=213877;RO=5986;RPL=2755;RPP=5985.42;RPPR=13001.4;RPR=0;RUN=1;SAF=2755;SAP=5985.42;SAR=0;SRF=11;SRP=12906.1;SRR=5975;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:40,12:40:1431:12:432:-23.512,0,-113.433	0/1:152:128,24:128:4584:24:834:-29.5147,0,-366.968	0/1:60:41,19:41:1457:19:680:-43.3824,0,-113.362	0/1:233:190,43:190:6761:43:1548:-69.2843,0,-538.424	0/1:32:15,17:15:540:17:612:-45.7019,0,-39.3036	0/1:33:19,14:19:676:14:489:-34.3446,0,-51.234	0/1:118:81,37:81:2908:37:1332:-84.4904,0,-226.433	0/1:173:129,44:129:4620:44:1572:-89.5016,0,-363.185	0/1:104:89,15:89:3165:15:536:-17.2011,0,-253.767	0/1:77:50,27:50:1792:27:972:-64.4925,0,-138.383	0/1:60:50,10:50:1785:10:360:-14.6361,0,-142.869	0/1:96:67,29:67:2386:29:1025:-63.5366,0,-186.098	0/1:94:76,18:76:2709:18:633:-28.9195,0,-215.055	0/1:86:66,20:66:2356:20:720:-39.1478,0,-186.41	0/1:101:75,26:75:2696:26:932:-53.6745,0,-212.48	0/1:47:38,9:38:1364:9:324:-15.3156,0,-108.912	0/1:92:76,16:76:2713:16:572:-24.0475,0,-216.017	0/1:69:60,9:60:2144:9:324:-8.69295,0,-172.457	0/1:57:51,6:51:1828:6:216:-2.60374,0,-147.642	0/1:238:131,107:131:4700:107:3821:-271.963,0,-351.142	0/1:157:130,27:130:4655:27:972:-40.4117,0,-371.849	0/1:64:15,49:15:540:49:1751:-138.393,0,-29.6706	0/1:69:55,14:55:1957:14:504:-24.8622,0,-155.633	0/1:74:41,33:41:1457:33:1184:-84.4412,0,-109.148	0/1:104:70,34:70:2504:34:1224:-79.0033,0,-194.305	0/1:238:106,132:106:3778:132:4702:-351.108,0,-268.567	0/1:173:100,73:100:3573:73:2601:-181.932,0,-269.698	0/1:44:32,12:32:1136:12:432:-25.9203,0,-89.3032	0/1:424:341,83:341:12121:83:2969:-139.43,0,-963.102	0/1:99:63,36:63:2237:36:1266:-84.2781,0,-171.79	0/1:56:30,26:30:1076:26:932:-67.224,0,-80.2952	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.6326	0/1:7:5,2:5:176:2:72:-4.71982,0,-14.0778	0/1:2:1,1:1:36:1:36:-2.99111,0,-2.99621	0/1:9:6,3:6:216:3:108:-7.35161,0,-17.0812	0/1:9:6,3:6:216:3:104:-6.9821,0,-17.0812	0/1:220:146,74:146:5216:74:2660:-173.081,0,-403.35	0/1:152:53,99:53:1881:99:3556:-274.046,0,-123.81	0/1:52:32,20:32:1148:20:716:-49.0246,0,-87.9763	0/1:5:2,3:2:72:3:108:-8.55573,0,-5.33157	0/1:161:129,32:129:4632:32:1152:-55.3769,0,-368.576	0/1:37:23,14:23:815:14:504:-34.4952,0,-62.5327	0/1:113:62,51:62:2223:51:1809:-128.851,0,-166.317	0/1:50:39,11:39:1381:11:381:-19.5225,0,-109.535	0/1:76:62,14:62:2224:14:500:-22.3959,0,-177.541	0/1:80:42,38:42:1508:38:1360:-98.4487,0,-111.932	0/1:76:42,34:42:1499:34:1220:-87.0746,0,-112.326	0/1:128:78,50:78:2789:50:1784:-122.092,0,-212.717	0/1:129:88,41:88:3156:41:1476:-94.1129,0,-245.431	0/1:139:111,28:111:3988:28:1004:-48.7048,0,-317.265	0/1:196:120,76:120:4274:76:2713:-185.069,0,-325.835	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:87:61,26:61:2188:26:921:-56.9002,0,-170.991	0/1:14:5,9:5:176:9:312:-24.1675,0,-11.9706	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	0/1:65:43,22:43:1533:22:792:-51.9372,0,-118.694	0/1:27:16,11:16:576:11:392:-27.444,0,-44.0472	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:12:1,11:1:36:11:381:-30.9758,-0.0140851,0	0/1:70:50,20:50:1783:20:716:-43.606,0,-139.68	0/1:128:78,50:78:2800:50:1747:-118.765,0,-213.708	0/1:9:5,4:5:180:4:144:-10.5855,0,-13.8428	0/1:114:58,56:58:2075:56:1993:-145.082,0,-152.698	0/1:162:102,60:102:3630:60:2156:-145.265,0,-278.136	0/1:63:53,10:53:1893:10:360:-13.733,0,-151.681	0/1:78:60,18:60:2141:18:648:-35.0868,0,-169.476	0/1:184:144,40:144:5110:40:1421:-72.6189,0,-403.915	0/1:40:23,17:23:824:17:612:-43.2937,0,-62.4421	0/1:34:28,6:28:1000:6:216:-9.52743,0,-80.0804	0/1:69:57,12:57:2028:12:432:-18.3945,0,-161.321	0/1:140:90,50:90:3220:50:1788:-118.837,0,-247.878	0/1:30:23,7:23:824:7:248:-13.6034,0,-65.4524	0/1:123:65,58:65:2332:58:2072:-149.468,0,-173.112	0/1:41:19,22:19:671:22:788:-58.8038,0,-48.3736	0/1:172:115,57:115:4109:57:2044:-132.198,0,-318.216	0/1:168:141,27:141:5023:27:968:-36.741,0,-400.865	0/1:136:99,37:99:3490:37:1328:-78.7129,0,-273.365	0/0:119:110,9:110:3940:9:320:0,-6.71926,-325.689	0/1:6:4,2:4:144:2:72:-5.02085,0,-11.5074	0/1:137:98,39:98:3508:39:1404:-85.2386,0,-274.685	0/1:89:66,23:66:2364:23:828:-47.9447,0,-186.227	0/1:295:158,137:158:5656:137:4890:-350.819,0,-420.356	0/1:137:89,48:89:3196:48:1728:-114.342,0,-246.622	0/1:71:57,14:57:2044:14:504:-24.2602,0,-162.859	0/1:66:52,14:52:1852:14:504:-25.7653,0,-147.092	0/1:157:129,28:129:4628:28:1004:-43.2878,0,-369.42	0/1:61:42,19:42:1512:19:680:-43.0813,0,-117.694	0/1:68:38,30:38:1364:30:1080:-76.9049,0,-102.591	0/1:78:57,21:57:2044:21:756:-44.7899,0,-160.751	0/1:26:17,9:17:612:9:324:-21.6372,0,-47.5867	0/1:52:26,26:26:932:26:936:-68.7906,0,-67.8424	0/1:45:24,21:24:855:21:756:-54.7239,0,-63.7238	0/1:128:98,30:98:3501:30:1050:-56.1419,0,-276.767	0/1:114:80,34:80:2876:34:1220:-75.6355,0,-224.759
chr05	26461676	.	C	T	131857	PASS	AB=0.44425;ABP=449.964;AC=94;AF=0.5;AN=188;AO=7355;CIGAR=1X;DP=16556;DPB=16556;DPRA=0;EPP=15974.2;EPPR=19971.9;GTI=93;LEN=1;MEANALT=1.05319;MQM=32.8582;MQMR=11.0245;NS=94;NUMALT=1;ODDS=28.2357;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263145;QR=329537;RO=9196;RPL=0;RPP=15974.2;RPPR=19971.9;RPR=7355;RUN=1;SAF=7355;SAP=15974.2;SAR=0;SRF=9196;SRP=19971.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:94:50,44:50:1788:44:1580:-97.9439,0,-22.9218	0/1:204:106,98:106:3781:98:3520:-212.294,0,-42.4894	0/1:357:214,143:214:7656:143:5121:-296.163,0,-113.186	0/1:375:223,152:223:7972:152:5449:-307.336,0,-97.3903	0/1:170:108,61:108:3876:61:2192:-119.109,0,-64.2999	0/1:75:49,26:49:1764:26:936:-51.2488,0,-25.8071	0/1:290:135,154:135:4821:154:5513:-342.128,0,-36.7091	0/1:259:117,142:117:4188:142:5080:-319.028,0,-37.2909	0/1:216:119,96:119:4280:96:3433:-206.203,0,-54.7264	0/1:218:115,103:115:4120:103:3670:-221.131,0,-38.316	0/1:92:60,32:60:2156:32:1152:-62.6939,0,-26.4408	0/1:131:73,58:73:2616:58:2069:-124.659,0,-32.1382	0/1:116:71,45:71:2544:45:1586:-90.2807,0,-38.0698	0/1:127:74,53:74:2651:53:1904:-108.907,0,-37.0127	0/1:133:81,52:81:2904:52:1872:-103.937,0,-35.6793	0/1:129:83,46:83:2972:46:1652:-90.3462,0,-46.7412	0/1:141:93,48:93:3348:48:1728:-95.0516,0,-50.9666	0/1:93:51,42:51:1832:42:1512:-92.8152,0,-24.2369	0/1:65:38,27:38:1351:27:972:-58.1533,0,-19.8089	0/1:539:326,213:326:11692:213:7634:-429.081,0,-146.16	0/1:290:156,133:156:5572:133:4749:-281.26,0,-75.472	0/1:193:118,75:118:4224:75:2692:-152.54,0,-52.71	0/1:96:45,51:45:1612:51:1802:-112.734,0,-20.4142	0/1:231:138,93:138:4940:93:3317:-189.274,0,-68.3296	0/1:202:109,93:109:3912:93:3328:-198.791,0,-52.1456	0/1:454:299,155:299:10721:155:5519:-288.345,0,-139.551	0/1:480:262,218:262:9385:218:7808:-465.538,0,-115.976	0/1:77:41,36:41:1476:36:1292:-76.8013,0,-17.024	0/1:710:398,312:398:14237:312:11169:-652.226,0,-155.739	0/1:82:50,32:50:1796:32:1152:-62.9556,0,-29.1692	0/1:148:64,84:64:2296:84:3004:-191.223,0,-17.6057	0/1:12:9,3:9:324:3:108:-5.13383,0,-5.30643	0/1:26:17,9:17:612:9:324:-17.9036,0,-10.0761	0/1:5:2,3:2:72:3:108:-7.4202,0,-0.582451	0/1:22:13,9:13:468:9:324:-18.4241,0,-8.6097	0/1:20:14,6:14:504:6:216:-11.5113,0,-10.1783	0/1:362:214,148:214:7670:148:5308:-301.039,0,-88.2295	0/1:150:73,77:73:2624:77:2741:-169.901,0,-26.871	0/1:107:60,47:60:2148:47:1677:-101.887,0,-26.8667	0/1:3:2,1:2:72:1:36:-2.22055,0,-0.995047	0/1:199:100,99:100:3584:99:3507:-212.584,0,-40.9605	0/1:66:45,21:45:1616:21:756:-38.5128,0,-24.4691	0/1:252:141,111:141:5045:111:3971:-232.658,0,-68.2725	0/1:143:67,76:67:2404:76:2732:-166.235,0,-19.9539	0/1:108:47,61:47:1680:61:2179:-135.945,0,-14.4104	0/1:221:122,99:122:4368:99:3537:-209.711,0,-49.2623	0/1:204:122,82:122:4376:82:2936:-170.461,0,-67.3819	0/1:334:172,162:172:6156:162:5789:-352.37,0,-66.3598	0/1:218:120,98:120:4304:98:3524:-206.289,0,-44.5472	0/1:148:95,53:95:3408:53:1889:-98.5941,0,-44.4692	0/1:315:166,149:166:5948:149:5325:-319.905,0,-61.4752	0/1:11:5,6:5:180:6:216:-13.8687,0,-1.28416	0/1:263:152,111:152:5452:111:3931:-230.339,0,-79.2794	0/1:42:28,14:28:1008:14:504:-27.0269,0,-19.204	0/1:27:17,10:17:612:10:360:-20.8796,0,-9.68477	0/1:149:74,75:74:2656:75:2661:-163.797,0,-35.1992	0/1:53:36,17:36:1284:17:612:-30.2699,0,-18.9963	0/1:17:7,10:7:252:10:360:-23.3076,0,-1.27621	0/1:29:12,17:12:432:17:612:-39.3742,0,-2.15944	0/1:119:51,68:51:1817:68:2429:-150.541,0,-18.8849	0/1:223:117,106:117:4196:106:3797:-229.284,0,-42.8901	0/1:17:10,7:10:360:7:252:-14.8738,0,-3.97357	0/1:311:163,148:163:5817:148:5320:-319.003,0,-55.0648	0/1:281:139,142:139:4984:142:5079:-304.789,0,-44.773	0/1:132:79,53:79:2828:53:1908:-108.536,0,-41.6242	0/1:102:53,49:53:1900:49:1756:-105.189,0,-21.6765	0/1:406:246,160:246:8809:160:5710:-319.302,0,-114.143	0/1:63:29,34:29:1040:34:1212:-76.4502,0,-7.20808	0/1:60:39,21:39:1395:21:756:-41.4031,0,-20.4259	0/1:173:106,67:106:3800:67:2377:-138.554,0,-52.3952	0/1:134:65,69:65:2332:69:2476:-150.626,0,-24.9502	0/1:29:20,9:20:716:9:320:-16.7223,0,-11.6809	0/1:232:113,119:113:4032:119:4234:-263.172,0,-46.0384	0/1:163:80,83:80:2868:83:2965:-183.667,0,-29.8763	0/1:200:100,100:100:3592:100:3592:-215.494,0,-47.0545	0/1:389:186,203:186:6668:203:7243:-448.123,0,-60.3074	0/1:266:135,131:135:4844:131:4659:-289.721,0,-57.5351	0/1:145:75,70:75:2696:70:2508:-155.404,0,-30.6236	0/1:15:10,5:10:360:5:180:-10.1476,0,-7.73504	0/1:259:133,126:133:4780:126:4536:-273.25,0,-57.9579	0/1:235:158,76:158:5644:76:2720:-144.69,0,-87.5334	0/1:573:297,276:297:10664:276:9845:-591.766,0,-97.9495	0/1:194:128,66:128:4587:66:2353:-120.056,0,-63.2925	0/1:131:68,63:68:2440:63:2256:-136.518,0,-30.9818	0/1:151:82,69:82:2944:69:2484:-148.485,0,-28.7287	0/1:228:122,106:122:4380:106:3800:-228.174,0,-43.7246	0/1:78:37,41:37:1328:41:1472:-92.1185,0,-13.1258	0/1:130:66,64:66:2360:64:2292:-142.125,0,-30.9608	0/1:124:70,54:70:2512:54:1944:-116.829,0,-31.6396	0/1:63:45,18:45:1616:18:648:-32.0084,0,-30.1076	0/1:123:74,49:74:2656:49:1756:-97.7649,0,-43.6101	0/1:137:86,5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chr05	26461686	.	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chr05	26548178	.	A	C	25612	PASS	AB=0.49886;ABP=3.04495;AC=45;AF=0.239362;AN=188;AO=1557;CIGAR=1X;DP=6488;DPB=6488;DPRA=1.17562;EPP=3383.99;EPPR=10682.3;GTI=0;LEN=1;MEANALT=1.07018;MQM=59.991;MQMR=59.9919;NS=94;NUMALT=1;ODDS=2.30837;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55434;QR=175617;RO=4926;RPL=2;RPP=3366.64;RPPR=10578.4;RPR=1555;RUN=1;SAF=2;SAP=3366.64;SAR=1555;SRF=14;SRP=10578.4;SRR=4912;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:19,14:19:680:14:495:-34.949,0,-51.5952	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/1:92:50,42:50:1779:42:1490:-106.699,0,-132.697	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:33:33,0:33:1169:0:0:0,-9.93399,-104.577	0/0:30:29,1:29:1036:1:21:0,-6.93095,-91.454	0/1:43:22,21:22:788:21:737:-53.7063,0,-58.3005	0/0:104:103,1:103:3674:1:36:0,-27.7088,-327.265	0/1:62:33,29:33:1156:29:1031:-74.4396,0,-85.6798	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/1:58:26,32:26:932:32:1132:-84.7288,0,-66.7391	0/1:104:55,49:55:1967:49:1742:-125.756,0,-145.997	0/1:44:20,24:20:720:24:856:-64.1158,0,-51.8835	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/1:91:48,43:48:1686:43:1540:-111.499,0,-124.631	0/0:41:41,0:41:1448:0:0:0,-12.3422,-130.616	0/0:37:37,0:37:1296:0:0:0,-11.1381,-116.938	0/1:99:58,41:58:2076:41:1459:-101.799,0,-157.309	0/1:107:58,49:58:2076:49:1733:-124.042,0,-154.896	0/1:75:18,57:18:644:57:2039:-161.204,0,-35.7133	0/1:25:10,15:10:356:15:540:-41.4108,0,-24.8555	0/0:99:90,9:90:3196:9:315:0,-1.11474,-259.176	0/0:72:71,1:71:2548:1:20:0,-19.6742,-227.57	0/0:209:208,1:208:7429:1:36:0,-59.317,-665.055	0/0:142:142,0:142:5085:0:0:0,-42.7463,-457.792	0/1:25:17,8:17:608:8:275:-17.5577,0,-47.5263	0/1:174:77,97:77:2756:97:3453:-258.603,0,-195.903	0/0:92:90,2:90:3236:2:72:0,-20.858,-284.624	0/0:65:65,0:65:2318:0:0:0,-19.5669,-208.879	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:164:77,87:77:2746:87:3124:-232.017,0,-198.013	0/0:166:166,0:166:5916:0:0:0,-49.971,-532.55	0/0:77:77,0:77:2722:0:0:0,-23.1793,-245.221	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:72:33,39:33:1184:39:1386:-103.363,0,-85.1942	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:88:51,37:51:1819:37:1317:-92.3392,0,-137.5	0/1:32:12,20:12:432:20:720:-55.4958,0,-29.5882	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:81:47,34:47:1642:34:1220:-85.7234,0,-123.68	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/1:96:52,44:52:1849:44:1572:-112.873,0,-137.789	0/0:71:71,0:71:2515:0:0:0,-21.3731,-226.6	0/0:118:117,1:117:4176:1:36:0,-31.9233,-372.425	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:121:68,53:68:2444:53:1900:-134.853,0,-183.79	0/0:28:27,1:27:968:1:36:0,-4.83056,-83.8391	0/1:22:11,11:11:392:11:392:-28.9974,0,-28.9974	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:13:5,8:5:180:8:279:-21.5341,0,-12.6387	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/1:135:75,59:75:2680:59:2108:-149.331,0,-200.787	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:87:51,36:51:1817:36:1292:-90.3942,0,-137.62	0/1:94:53,41:53:1860:41:1468:-104.119,0,-139.38	0/1:70:39,30:39:1373:30:1054:-74.0386,0,-102.736	0/1:43:21,22:21:756:22:792:-58.6614,0,-55.4229	0/0:72:70,2:70:2508:2:72:0,-14.8374,-219.136	0/0:141:137,4:137:4904:4:144:0,-29.1316,-428.198	0/1:35:18,17:18:644:17:608:-44.516,0,-47.7545	0/1:25:7,18:7:248:18:633:-49.7697,0,-15.1384	0/1:99:44,55:44:1572:55:1950:-145.973,0,-111.97	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:118:117,0:117:4173:0:0:0,-35.2205,-375.392	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:99:99,0:99:3518:0:0:0,-29.802,-316.831	0/0:98:98,0:98:3519:0:0:0,-29.5009,-316.918	0/1:106:56,50:56:1953:50:1779:-128.483,0,-144.132	0/0:66:66,0:66:2336:0:0:0,-19.868,-210.498	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:69:68,1:68:2427:1:36:0,-17.1728,-215.087	0/1:90:38,52:38:1360:52:1864:-140.946,0,-95.6079	0/0:145:145,0:145:5203:0:0:0,-43.6493,-468.407	0/1:100:45,55:45:1616:55:1974:-147.832,0,-115.627	0/1:45:20,24:20:716:24:845:-62.7633,0,-51.1627	0/0:49:49,0:49:1734:0:0:0,-14.7505,-156.343	0/1:105:51,54:51:1815:54:1927:-142.098,0,-132.023	0/1:45:21,24:21:725:24:851:-63.3631,0,-52.0211	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:53:29,24:29:1040:24:841:-60.0518,0,-77.9598	0/0:57:57,0:57:2018:0:0:0,-17.1587,-181.892	0/1:137:69,68:69:2464:68:2413:-176.186,0,-180.773	0/1:52:18,34:18:627:34:1211:-93.642,0,-41.1008	0/0:102:102,0:102:3578:0:0:0,-30.7051,-322.227	0/0:75:73,1:73:2611:1:32:0,-19.4168,-232.018
chr05	26552751	.	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chr05	26592732	.	T	G	67713.4	PASS	AB=0.462378;ABP=87.4828;AC=122;AF=0.648936;AN=188;AO=4081;CIGAR=1X;DP=7942;DPB=7942;DPRA=0;EPP=8864.79;EPPR=8384.89;GTI=14;LEN=1;MEANALT=1.01064;MQM=51.2867;MQMR=22.8181;NS=94;NUMALT=1;ODDS=0.911985;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141774;QR=137076;RO=3860;RPL=4;RPP=8830.08;RPPR=8350.19;RPR=4077;RUN=1;SAF=4;SAP=8830.08;SAR=4077;SRF=3856;SRP=8350.19;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:136:-12.5578,-1.20412,0	1/1:77:0,77:0:0:77:2724:-244.452,-23.1793,0	1/1:21:0,21:0:0:21:740:-66.808,-6.32163,0	0/1:330:183,147:183:6517:147:5029:-351.45,0,-272.954	0/1:32:20,12:20:716:12:419:-28.3252,0,-31.5872	1/1:35:0,35:0:0:35:1244:-111.457,-10.5361,0	0/1:84:33,51:33:1165:51:1738:-130.222,0,-41.7786	1/1:64:0,64:0:0:64:2280:-204.484,-19.2659,0	1/1:26:0,26:0:0:26:908:-81.9002,-7.82678,0	0/1:245:106,139:106:3751:139:4826:-357.739,0,-142.391	0/1:73:41,32:41:1467:32:1122:-78.2599,0,-62.0576	1/1:37:0,37:0:0:37:1288:-115.488,-11.1381,0	1/1:38:0,38:0:0:38:1336:-119.963,-11.4391,0	0/1:41:20,21:20:712:21:727:-52.7127,0,-28.8507	0/1:54:28,26:28:991:26:892:-63.9792,0,-40.8859	0/1:104:62,42:62:2208:42:1435:-97.4062,0,-95.5693	1/1:8:0,8:0:0:8:284:-25.7039,-2.40824,0	1/1:65:0,65:0:0:65:2304:-206.923,-19.567,0	1/1:14:0,14:0:0:14:496:-44.7487,-4.21442,0	0/1:167:83,84:83:2937:84:2944:-212.771,0,-118.388	0/1:143:68,75:68:2428:75:2616:-191.083,0,-96.5114	0/1:28:20,8:20:720:8:275:-16.5497,0,-30.9066	0/1:46:30,16:30:1072:16:542:-35.1556,0,-47.4168	0/1:121:57,64:57:2016:64:2205:-161.826,0,-80.0267	0/1:61:36,25:36:1284:25:846:-56.5864,0,-54.5639	0/1:497:196,301:196:6978:301:10360:-774.691,0,-236.406	0/1:292:174,118:174:6188:118:3990:-270.618,0,-267.839	0/1:26:14,12:14:504:12:428:-30.9383,0,-21.2854	0/1:111:62,49:62:2211:49:1732:-122.28,0,-86.5234	0/1:148:67,81:67:2404:81:2802:-207.14,0,-93.0367	0/1:111:47,64:47:1665:64:2184:-162.748,0,-62.6123	0/1:8:3,5:3:108:5:167:-12.9208,0,-3.97258	0/1:35:22,13:22:784:13:464:-31.4596,0,-34.7589	1/1:4:0,4:0:0:4:136:-12.5578,-1.20412,0	1/1:11:0,11:0:0:11:388:-35.0437,-3.31133,0	1/1:2:0,2:0:0:2:68:-6.44859,-0.60206,0	0/1:121:46,75:46:1635:75:2625:-197.142,0,-53.7479	0/1:179:117,62:117:4168:62:2140:-138.351,0,-185.483	1/1:26:0,26:0:0:26:928:-83.3813,-7.82678,0	1/1:4:0,4:0:0:4:140:-12.9161,-1.20412,0	0/1:77:39,38:39:1380:38:1312:-94.6448,0,-56.8736	0/1:34:21,13:21:752:13:451:-30.595,0,-33.0362	0/1:54:33,21:33:1180:21:729:-49.154,0,-51.6002	0/1:37:12,25:12:432:25:875:-67.568,0,-13.7015	0/1:83:37,46:37:1307:46:1596:-117.919,0,-50.9081	0/1:79:41,38:41:1464:38:1308:-93.6998,0,-57.1833	1/1:20:0,20:0:0:20:720:-64.8529,-6.0206,0	0/1:179:111,68:111:3904:68:2345:-155.972,0,-173.925	0/1:46:20,26:20:711:26:915:-67.4213,0,-26.5854	0/1:251:152,99:152:5351:99:3456:-234.181,0,-233.505	0/1:107:82,25:82:2893:25:861:-43.9285,0,-129.248	0/1:10:2,8:2:72:8:284:-22.6808,0,-1.31954	1/1:20:0,20:0:0:20:716:-64.079,-6.0206,0	0/1:112:85,27:85:3021:27:939:-50.6874,0,-132.63	1/1:13:0,13:0:0:13:464:-41.868,-3.91339,0	0/1:254:167,87:167:5936:87:2994:-192.381,0,-267.785	0/1:18:12,6:12:432:6:189:-11.8745,0,-19.4211	0/1:7:4,3:4:144:3:100:-7.01775,0,-5.97045	0/1:22:8,14:8:288:14:487:-37.34,0,-9.31434	0/1:51:28,23:28:1000:23:784:-55.3039,0,-42.2483	0/1:90:43,47:43:1527:47:1640:-120.06,0,-60.5224	0/1:7:2,5:2:72:5:163:-12.8598,0,-2.22263	0/1:58:27,31:27:949:31:1055:-76.5867,0,-35.462	0/1:101:65,36:65:2291:36:1261:-82.6291,0,-102.754	0/1:47:27,20:27:968:20:695:-48.483,0,-41.4287	0/1:43:28,15:28:996:15:521:-33.9781,0,-44.6294	0/1:200:131,69:131:4647:69:2358:-151.826,0,-205.869	0/0:179:165,14:165:5873:14:496:0,-9.19808,-292.425	0/1:19:15,4:15:540:4:140:-7.19857,0,-25.273	1/1:28:0,28:0:0:28:976:-88.0051,-8.42884,0	0/1:44:14,30:14:504:30:1010:-77.6814,0,-14.4799	0/1:65:49,16:49:1748:16:531:-28.2021,0,-80.6122	1/1:57:0,57:0:0:57:2016:-181.351,-17.1587,0	1/1:39:0,39:0:0:39:1392:-125.197,-11.7402,0	0/1:119:51,68:51:1808:68:2377:-177.264,0,-68.8151	0/1:379:224,155:224:7904:155:5420:-370.351,0,-342.335	1/1:5:0,5:0:0:5:176:-16.1573,-1.50515,0	1/1:144:1,142:1:36:142:5016:-447.624,-41.0422,0	1/1:4:0,4:0:0:4:144:-13.2883,-1.20412,0	0/1:210:109,101:109:3864:101:3444:-246.278,0,-160.161	1/1:29:0,29:0:0:29:1032:-93.0251,-8.72987,0	0/1:244:132,112:132:4649:112:3853:-272.212,0,-195.118	0/1:92:38,54:38:1364:54:1846:-137.852,0,-50.0935	0/1:64:37,27:37:1328:27:927:-64.051,0,-56.6474	0/1:110:28,82:28:979:82:2840:-221.707,0,-24.2941	0/1:103:41,62:41:1455:62:2172:-164.155,0,-52.5237	1/1:24:0,24:0:0:24:848:-76.4153,-7.22472,0	1/1:50:0,50:0:0:50:1776:-159.459,-15.0515,0	1/1:23:0,23:0:0:23:816:-73.3268,-6.92369,0	0/1:55:37,18:37:1324:18:636:-40.8803,0,-58.5574	0/1:67:44,23:44:1576:23:788:-50.765,0,-70.2476	0/1:38:25,13:25:887:13:459:-30.0268,0,-39.5572	0/1:118:72,46:72:2551:46:1618:-109.457,0,-112.307	0/1:120:66,54:66:2340:54:1899:-133.692,0,-98.4865
chr05	26691067	.	CTAT	TTAG,TTAT	147953	PASS	AB=0.47277,0.521968;ABP=27.4895,18.943;AC=137,49;AF=0.736559,0.263441;AN=186;AO=5450,2008;CIGAR=1X2M1X,1X3M;DP=7497;DPB=7497;DPRA=16.287,0.993167;EPP=11750.8,4363.33;EPPR=7.35324;GTI=1;LEN=4,1;MEANALT=1.96739,2.32143;MQM=44.5215,57.5085;MQMR=60;NS=93;NUMALT=2;ODDS=2.60789;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=186682,68527;QR=72;RO=2;RPL=10,0;RPP=11750.8,4363.33;RPPR=7.35324;RPR=5440,2008;RUN=1,1;SAF=0,0;SAP=11837.5,4363.33;SAR=5450,2008;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:52:0,24,28:0:0:24,28:816,985:-145.539,-80.4238,-73.199,-65.4579,0,-57.0291	1/1:67:0,66,0:0:0:66,0:2219,0:-196.91,-19.868,0,-196.91,-19.868,-196.91	1/2:122:0,58,64:0:0:58,64:1950,2206:-335.481,-179.478,-162.019,-156.34,0,-137.074	1/1:243:0,241,0:0:0:241,0:8147,0:-723.349,-72.5482,0,-723.349,-72.5482,-723.349	1/1:59:0,59,0:0:0:59,0:2067,0:-183.183,-17.7608,0,-183.183,-17.7608,-183.183	1/1:36:0,36,0:0:0:36,0:1242,0:-110.628,-10.8371,0,-110.628,-10.8371,-110.628	1/2:93:0,40,53:0:0:40,53:1377,1823:-258.753,-148.35,-136.309,-110.745,0,-94.7904	1/1:68:0,66,1:0:0:66,1:2225,36:-197.512,-19.868,0,-194.575,-16.929,-194.274	1/2:101:0,51,48:0:0:51,48:1767,1652:-275.898,-134.196,-118.843,-141.768,0,-127.318	1/1:56:0,56,0:0:0:56,0:1926,0:-170.931,-16.8577,0,-170.931,-16.8577,-170.931	1/1:40:0,40,0:0:0:40,0:1373,0:-122.444,-12.0412,0,-122.444,-12.0412,-122.444	1/1:106:0,105,1:0:0:105,1:3661,36:-324.424,-31.6082,0,-321.572,-28.4065,-321.271	1/2:72:0,37,35:0:0:37,35:1282,1125:-192.756,-90.5304,-79.3923,-102.556,0,-92.0195	1/2:69:0,38,31:0:0:38,31:1288,1089:-191.221,-88.9597,-77.5206,-102.604,0,-93.2716	1/2:69:0,35,34:0:0:35,34:1199,1185:-191.78,-96.5614,-86.0253,-95.5603,0,-85.3253	1/1:56:0,56,0:0:0:56,0:1926,0:-170.88,-16.8577,0,-170.88,-16.8577,-170.88	1/2:25:0,9,16:0:0:9,16:307,564:-70.8387,-46.2609,-43.5516,-24.9202,0,-20.1038	1/1:48:0,48,0:0:0:48,0:1654,0:-146.534,-14.4494,0,-146.534,-14.4494,-146.534	1/1:19:0,19,0:0:0:19,0:648,0:-58.0021,-5.71957,0,-58.0021,-5.71957,-58.0021	1/2:140:0,60,80:0:0:60,80:2055,2713:-384.021,-220.176,-202.114,-164.183,0,-140.1	1/2:122:0,50,72:0:0:50,72:1705,2576:-345.87,-210.221,-195.17,-135.993,0,-114.318	1/2:139:0,53,86:0:0:53,86:1805,2926:-381.795,-237.43,-221.475,-144.702,0,-118.814	1/2:115:0,53,62:0:0:53,62:1766,2094:-310.978,-169.74,-153.786,-141.571,0,-122.907	1/1:22:0,20,2:0:0:20,2:690,68:-61.3311,-6.0206,0,-55.8167,-0.166289,-55.2147	1/1:39:0,39,0:0:0:39,0:1351,0:-120.194,-11.7402,0,-120.194,-11.7402,-120.194	1/1:213:0,213,0:0:0:213,0:7287,0:-646.717,-64.1194,0,-646.717,-64.1194,-646.717	1/1:195:0,194,0:0:0:194,0:6659,0:-589.329,-58.3998,0,-589.329,-58.3998,-589.329	1/2:29:0,14,15:0:0:14,15:490,510:-80.9328,-41.6916,-37.4771,-39.5837,0,-35.0682	1/2:262:1,111,144:1:36:111,144:3770,4932:-698.671,-397.327,-366.85,-298.734,0,-258.324	1/1:171:0,159,11:0:0:159,11:5394,347:-476.813,-47.8638,0,-448.983,-19.9726,-445.671	1/1:118:0,118,0:0:0:118,0:4073,0:-361.58,-35.5215,0,-361.58,-35.5215,-361.58	1/2:6:0,2,4:0:0:2,4:72,144:-17.8894,-12.1058,-11.5037,-6.14012,0,-4.936	1/2:5:0,4,1:0:0:4,1:137,36:-14.264,-3.29724,-2.09312,-11.3224,0,-11.0213	1/1:2:0,2,0:0:0:2,0:68,0:-6.39093,-0.60206,0,-6.39093,-0.60206,-6.39093	1/1:6:0,6,0:0:0:6,0:207,0:-18.7477,-1.80618,0,-18.7477,-1.80618,-18.7477	1/1:9:0,9,0:0:0:9,0:305,0:-27.3915,-2.70927,0,-27.3915,-2.70927,-27.3915	1/2:175:0,100,74:0:0:100,74:3419,2533:-478.688,-205.58,-175.477,-273.141,0,-250.865	1/1:115:0,115,0:0:0:115,0:3969,0:-350.922,-34.6185,0,-350.922,-34.6185,-350.922	1/1:34:0,33,0:0:0:33,0:1131,0:-99.3532,-9.93399,0,-99.3532,-9.93399,-99.3532	1/2:2:0,1,1:0:0:1,1:36,36:-6.18644,-3.29624,-2.99521,-3.24749,0,-2.94646	1/2:136:0,67,68:0:0:67,68:2290,2312:-370.078,-187.465,-167.296,-182.651,0,-162.181	1/1:26:0,26,0:0:0:26,0:890,0:-79.0857,-7.82678,0,-79.0857,-7.82678,-79.0857	1/2:141:0,52,89:0:0:52,89:1750,2964:-378.975,-239.948,-224.294,-139.359,0,-112.567	1/2:51:0,31,19:0:0:31,19:1075,630:-136.869,-51.0367,-41.7048,-85.9238,0,-80.2043	1/1:43:0,43,0:0:0:43,0:1483,0:-131.223,-12.9443,0,-131.223,-12.9443,-131.223	1/1:69:0,66,0:0:0:66,0:2279,0:-201.825,-19.868,0,-201.825,-19.868,-201.825	1/2:68:0,27,41:0:0:27,41:919,1378:-185.029,-111.845,-103.717,-73.5196,0,-61.1773	1/1:155:0,155,0:0:0:155,0:5231,0:-464.635,-46.6597,0,-464.635,-46.6597,-464.635	1/2:107:0,47,60:0:0:47,60:1623,2000:-291.738,-162.044,-147.896,-130.03,0,-111.968	1/1:79:0,78,0:0:0:78,0:2688,0:-238.128,-23.4803,0,-238.128,-23.4803,-238.128	1/1:49:0,48,1:0:0:48,1:1646,36:-146.282,-14.4494,0,-143.345,-11.1522,-143.044	2/2:5:0,0,5:0:0:0,5:0,180:-16.4773,-16.4773,-16.4773,-1.50515,-1.50515,0	1/2:89:0,45,44:0:0:45,44:1546,1523:-246.422,-124.006,-110.46,-122.756,0,-109.511	1/1:49:0,48,0:0:0:48,0:1621,0:-143.394,-14.4494,0,-143.394,-14.4494,-143.394	1/2:5:0,2,3:0:0:2,3:72,108:-14.9519,-9.16861,-8.56655,-6.14012,0,-5.23703	1/1:107:0,106,0:0:0:106,0:3660,0:-322.764,-31.9092,0,-322.764,-31.9092,-322.764	1/2:41:0,24,17:0:0:24,17:796,589:-111.73,-48.2023,-40.9776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chr05	26691082	.	G	A	38420.7	PASS	AB=0.549015;ABP=86.6675;AC=49;AF=0.263441;AN=186;AO=2221;CIGAR=1X;DP=7645;DPB=7645;DPRA=1.08143;EPP=4825.85;EPPR=11763.7;GTI=3;LEN=1;MEANALT=1.09804;MQM=57.4723;MQMR=44.5631;NS=93;NUMALT=1;ODDS=0.00690641;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79589;QR=193074;RO=5416;RPL=2221;RPP=4825.85;RPPR=11763.7;RPR=0;RUN=1;SAF=0;SAP=4825.85;SAR=2221;SRF=0;SRP=11763.7;SRR=5416;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:24,30:24:847:30:1080:-81.1449,0,-58.8477	0/0:65:65,0:65:2310:0:0:0,-19.5669,-204.753	0/1:124:57,67:57:2027:67:2400:-178.841,0,-142.466	0/0:241:241,0:241:8602:0:0:0,-72.5482,-761.062	0/0:58:58,0:58:2080:0:0:0,-17.4597,-184.03	0/0:35:35,0:35:1238:0:0:0,-10.536,-109.805	0/1:98:39,59:39:1391:59:2116:-161.155,0,-94.3011	0/0:68:67,1:67:2392:1:36:0,-16.8728,-208.572	0/1:108:53,55:53:1892:55:1968:-144.691,0,-135.359	0/0:55:55,0:55:1955:0:0:0,-16.5566,-172.758	0/0:39:39,0:39:1404:0:0:0,-11.7402,-124.908	0/0:104:104,0:104:3699:0:0:0,-31.3071,-327.642	0/1:75:37,38:37:1320:38:1368:-100.094,0,-93.9652	0/1:68:35,33:35:1247:33:1179:-85.918,0,-90.111	0/1:70:34,35:34:1220:35:1239:-90.6313,0,-87.0817	0/0:54:54,0:54:1920:0:0:0,-16.2556,-169.881	0/1:27:9,18:9:320:18:644:-50.1455,0,-20.6331	0/0:48:48,0:48:1707:0:0:0,-14.4494,-150.914	0/0:19:19,0:19:676:0:0:0,-5.71957,-60.365	0/1:148:60,88:60:2138:88:3134:-237.545,0,-144.631	0/1:124:48,75:48:1716:75:2696:-205.371,0,-114.426	0/1:147:51,96:51:1823:96:3440:-265.295,0,-117.826	0/1:132:55,77:55:1960:77:2743:-206.677,0,-134.469	0/1:22:20,2:20:716:2:72:-0.212152,0,-57.2709	0/0:39:39,0:39:1396:0:0:0,-11.7402,-123.759	0/0:211:211,0:211:7514:0:0:0,-63.5173,-665.497	0/0:191:191,0:191:6805:0:0:0,-57.4967,-601.142	0/1:32:14,18:14:504:18:644:-48.6415,0,-35.3479	0/1:281:117,164:117:4180:164:5892:-445.583,0,-285.318	0/0:171:157,13:157:5626:13:468:0,-9.10583,-453.789	0/0:117:116,0:116:4128:0:0:0,-34.9195,-365.577	0/1:6:2,4:2:68:4:144:-11.5037,0,-4.58475	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.3689	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.74218	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.1779	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.8184	0/1:183:99,84:99:3527:84:3020:-216.859,0,-257.001	0/0:115:115,0:115:4077:0:0:0,-34.6184,-358.9	0/0:34:34,0:34:1208:0:0:0,-10.235,-105.374	0/1:2:1,1:1:36:1:36:-2.99521,0,-2.94646	0/1:140:68,72:68:2432:72:2573:-189.523,0,-172.655	0/0:26:26,0:26:906:0:0:0,-7.82678,-79.934	0/1:147:50,97:50:1780:97:3480:-268.262,0,-113.08	0/1:52:32,20:32:1152:20:712:-48.736,0,-85.3664	0/0:43:43,0:43:1536:0:0:0,-12.9443,-135.534	0/0:66:66,0:66:2364:0:0:0,-19.868,-208.355	0/1:69:27,42:27:960:42:1512:-115.453,0,-64.3639	0/0:154:154,0:154:5499:0:0:0,-46.3586,-486.176	0/1:118:47,71:47:1676:71:2514:-190.814,0,-113.156	0/0:80:80,0:80:2855:0:0:0,-24.0824,-252.804	0/0:48:48,0:48:1712:0:0:0,-14.4494,-152.309	1/1:5:0,5:0:0:5:180:-16.4773,-1.50515,0	0/1:95:45,50:45:1590:50:1796:-133.209,0,-111.321	0/0:48:48,0:48:1724:0:0:0,-14.4494,-152.446	0/1:6:2,4:2:72:4:144:-11.5031,0,-4.936	0/0:105:105,0:105:3738:0:0:0,-31.6081,-328.907	0/1:40:22,18:22:775:18:648:-46.5943,0,-57.2217	0/1:3:1,2:1:36:2:72:-5.93172,0,-2.69148	0/1:11:5,6:5:180:6:212:-16.1085,0,-13.0118	0/0:70:70,0:70:2508:0:0:0,-21.0721,-222.466	0/1:101:44,57:44:1571:57:2044:-153.597,0,-109.282	.:.:.:.:.:.:.:.	0/1:236:103,132:103:3653:132:4709:-352.431,0,-251.265	0/1:194:73,121:73:2564:121:4348:-332.763,0,-169.21	0/1:39:13,26:13:468:26:936:-72.7942,0,-30.1323	0/1:72:37,35:37:1324:35:1260:-91.9307,0,-95.4803	0/0:174:173,0:173:6177:0:0:0,-52.0782,-545.63	0/0:110:110,0:110:3922:0:0:0,-33.1133,-347.502	0/1:34:24,10:24:860:10:360:-22.5001,0,-65.9018	0/1:61:30,31:30:1056:31:1112:-81.908,0,-75.5453	0/1:53:29,24:29:1044:24:860:-61.746,0,-77.0165	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.343	0/1:125:48,77:48:1702:77:2760:-210.855,0,-113.71	0/0:74:74,0:74:2648:0:0:0,-22.2762,-234.908	0/0:101:101,0:101:3575:0:0:0,-30.404,-317.778	0/0:154:154,0:154:5468:0:0:0,-46.3586,-482.829	0/1:141:86,54:86:3062:54:1932:-131.588,0,-228.77	0/0:96:96,0:96:3432:0:0:0,-28.8989,-303.993	0/1:7:4,3:4:140:3:108:-7.96514,0,-10.6803	0/0:87:86,1:86:3067:1:36:0,-22.5923,-267.391	0/1:84:43,41:43:1523:41:1464:-106.527,0,-110.29	0/0:131:130,0:130:4664:0:0:0,-39.1339,-410.712	0/1:57:23,34:23:815:34:1224:-92.7883,0,-55.5425	0/1:68:40,28:40:1420:28:1008:-70.4881,0,-104.625	0/0:49:49,0:49:1738:0:0:0,-14.7505,-153.743	0/1:126:54,72:54:1928:72:2586:-194.531,0,-132.868	0/1:25:17,8:17:608:8:288:-18.7343,0,-46.2538	0/0:77:77,0:77:2738:0:0:0,-23.1793,-241.248	0/1:59:24,35:24:856:35:1260:-95.9129,0,-58.1268	0/0:38:38,0:38:1364:0:0:0,-11.4391,-121.183	0/1:83:32,51:32:1144:51:1836:-140.489,0,-76.8739	0/1:62:26,36:26:928:36:1296:-98.1771,0,-64.1028	0/0:112:112,0:112:4003:0:0:0,-33.7154,-354.066	0/0:91:91,0:91:3268:0:0:0,-27.3937,-288.937
chr05	26691089	.	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chr05	26879312	.	G	T	27466	PASS	AB=0.506321;ABP=4.13588;AC=52;AF=0.276596;AN=188;AO=1654;CIGAR=1X;DP=6935;DPB=6935;DPRA=0.82541;EPP=3594.63;EPPR=11440.2;GTI=3;LEN=1;MEANALT=1.01667;MQM=59.9196;MQMR=59.9417;NS=94;NUMALT=1;ODDS=0.183166;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58971;QR=188910;RO=5279;RPL=0;RPP=3594.63;RPPR=11440.2;RPR=1654;RUN=1;SAF=1654;SAP=3594.63;SAR=0;SRF=5279;SRP=11466.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:9,8:9:320:8:284:-20.7858,0,-24.0248	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:62:41,21:41:1457:21:756:-49.7034,0,-112.76	0/0:198:197,0:197:7048:0:0:0,-59.3029,-633.956	0/1:22:18,4:18:640:4:144:-6.69096,0,-51.3067	0/1:26:12,14:12:432:14:489:-36.5121,0,-31.3944	0/1:89:54,35:54:1932:35:1256:-86.5536,0,-147.365	0/0:170:169,1:169:6072:1:36:0,-47.5768,-542.968	0/1:71:15,56:15:532:56:2003:-159.156,0,-26.84	0/0:146:146,0:146:5224:0:0:0,-43.9504,-469.868	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:55:27,28:27:972:28:981:-72.0444,0,-71.2389	0/1:44:24,20:24:856:20:711:-51.071,0,-64.1158	0/1:51:22,29:22:792:29:1024:-77.1191,0,-56.2516	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:32:13,19:13:468:19:684:-52.255,0,-32.8267	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/1:93:36,57:36:1288:57:2029:-154.885,0,-88.2272	0/1:135:72,63:72:2588:63:2264:-163.383,0,-192.529	0/1:66:31,35:31:1116:35:1243:-92.2908,0,-80.8837	0/1:52:27,25:27:968:25:900:-65.6498,0,-71.7838	0/1:52:47,5:47:1692:5:180:-0.898505,0,-136.913	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:364:364,0:364:13064:0:0:0,-109.575,-1175.5	0/0:98:98,0:98:3501:0:0:0,-29.5009,-315.298	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:227:111,116:111:3967:116:4132:-303.724,0,-288.887	0/0:133:129,4:129:4636:4:144:0,-26.7234,-404.078	0/0:126:126,0:126:4532:0:0:0,-37.9298,-408.045	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:134:62,72:62:2216:72:2568:-190.986,0,-159.367	0/0:233:233,0:233:8348:0:0:0,-70.14,-751.323	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:114:64,50:64:2292:50:1754:-123.777,0,-172.094	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:54:28,26:28:1008:26:917:-66.589,0,-74.7726	0/1:40:16,24:16:572:24:864:-66.0414,0,-39.7722	0/0:48:47,1:47:1675:1:36:0,-10.8538,-147.436	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.487	0/1:72:32,40:32:1152:40:1424:-106.783,0,-82.316	0/0:162:160,2:160:5721:2:72:0,-41.9301,-507.799	0/1:107:44,63:44:1545:63:2237:-169.382,0,-107.127	0/0:143:143,0:143:5121:0:0:0,-43.0473,-460.934	0/0:120:120,0:120:4293:0:0:0,-36.1236,-386.546	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	0/1:82:35,47:35:1245:47:1688:-127.522,0,-87.6683	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.787	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/0:73:73,0:73:2571:0:0:0,-21.9752,-231.635	0/1:20:11,9:11:377:9:324:-23.4853,0,-28.2373	0/1:8:3,5:3:108:5:165:-12.7654,0,-7.66693	0/1:12:5,7:5:180:7:243:-18.5951,0,-12.9397	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:97:46,51:46:1656:51:1836:-136.321,0,-120.128	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:230:92,138:92:3278:138:4952:-376.591,0,-225.999	0/1:160:83,77:83:2976:77:2745:-199.126,0,-219.908	0/1:70:31,39:31:1112:39:1396:-104.867,0,-79.3192	0/1:51:30,21:30:1057:21:747:-52.2018,0,-80.0864	0/0:132:131,1:131:4708:1:36:0,-36.1377,-420.277	0/0:112:111,1:111:3958:1:36:0,-30.1171,-352.797	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/1:39:22,17:22:788:17:608:-43.3119,0,-59.5046	0/1:77:30,47:30:1076:47:1692:-129.388,0,-73.9735	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:110:54,56:54:1925:56:1969:-144.368,0,-140.412	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.737	0/0:116:116,0:116:4096:0:0:0,-34.9195,-368.824	0/0:110:110,0:110:3921:0:0:0,-33.1133,-353.082	0/1:45:28,17:28:1000:17:608:-41.5057,0,-76.769	0/0:75:74,1:74:2656:1:36:0,-18.979,-235.687	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.616	0/1:65:42,22:42:1504:22:788:-51.6561,0,-116.175	0/0:188:188,0:188:6729:0:0:0,-56.5936,-605.683	0/1:93:59,34:59:2116:34:1211:-81.2997,0,-162.711	0/1:58:30,28:30:1080:28:1004:-73.2161,0,-80.0535	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:104:51,53:51:1828:53:1873:-137.538,0,-133.494	0/1:44:19,25:19:684:25:900:-68.0757,0,-48.645	0/0:37:36,1:36:1284:1:32:0,-7.9388,-112.664	0/1:46:22,24:22:792:24:841:-62.159,0,-57.7583	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:64:28,36:28:1000:36:1277:-95.9652,0,-71.0495	0/1:33:7,26:7:252:26:932:-74.2649,0,-13.095	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.357
chr05	26879317	.	G	C	109215	PASS	AB=0.485267;ABP=9.15281;AC=136;AF=0.723404;AN=188;AO=5191;CIGAR=1X;DP=6887;DPB=6887;DPRA=0;EPP=11197.1;EPPR=3651.1;GTI=2;LEN=1;MEANALT=1.05319;MQM=59.9278;MQMR=59.9242;NS=94;NUMALT=1;ODDS=1.22674;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184647;QR=60301;RO=1688;RPL=9;RPP=11197.1;RPPR=3651.1;RPR=5182;RUN=1;SAF=5191;SAP=11275.1;SAR=0;SRF=1688;SRP=3668.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:7,9:7:252:9:316:-23.9624,0,-18.2125	1/1:88:0,88:0:0:88:3136:-282.465,-26.4906,0	0/1:59:20,39:20:720:39:1395:-108.088,0,-47.368	1/1:194:0,194:0:0:194:6911:-622.017,-58.3998,0	0/1:25:6,19:6:201:19:676:-53.6422,0,-10.8913	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:89:34,55:34:1220:55:1972:-150.963,0,-83.3151	1/1:169:0,166:0:0:166:5941:-534.481,-49.971,0	0/1:74:60,14:60:2144:14:500:-23.06,0,-170.935	1/1:144:0,143:0:0:143:5090:-457.459,-43.0473,0	1/1:18:0,18:0:0:18:630:-57.0243,-5.41854,0	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	0/1:54:28,26:28:993:26:920:-66.8614,0,-73.4269	0/1:45:21,24:21:748:24:860:-64.1755,0,-54.0989	0/1:53:30,23:30:1080:23:801:-56.4503,0,-81.5587	1/1:40:0,40:0:0:40:1416:-127.737,-12.0412,0	0/1:34:21,13:21:747:13:464:-31.8625,0,-57.3169	1/1:41:0,41:0:0:41:1451:-130.885,-12.3422,0	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/1:91:56,35:56:2008:35:1239:-84.4199,0,-153.6	0/1:136:63,73:63:2256:73:2612:-194.388,0,-162.363	0/1:64:35,29:35:1241:29:1036:-74.288,0,-92.7228	0/1:52:26,26:26:936:26:928:-68.1847,0,-68.9059	0/1:52:6,46:6:216:46:1625:-130.883,0,-4.13695	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:357:0,357:0:0:357:12697:-1142.51,-107.468,0	1/1:96:1,95:1:36:95:3373:-300.187,-25.3006,0	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/1:225:116,109:116:4125:109:3854:-279.327,0,-303.699	1/1:133:4,129:4:144:129:4602:-401.026,-26.7234,0	1/1:127:0,127:0:0:127:4564:-410.924,-38.2308,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:134:72,62:72:2576:62:2216:-159.367,0,-191.706	1/1:225:0,225:0:0:225:7949:-715.357,-67.7318,0	1/1:43:0,43:0:0:43:1526:-137.632,-12.9443,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:112:50,62:50:1742:62:2178:-162.56,0,-123.336	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:55:27,28:27:964:28:1004:-74.1064,0,-70.5202	0/1:45:28,17:28:1008:17:608:-41.5057,0,-77.3601	1/1:47:0,47:0:0:47:1665:-150.128,-14.1484,0	1/1:48:0,48:0:0:48:1707:-153.904,-14.4494,0	0/1:72:39,33:39:1396:33:1171:-84.0225,0,-104.265	1/1:153:2,151:2:72:151:5379:-477.407,-39.2209,0	0/1:107:66,41:66:2356:41:1463:-99.7527,0,-180.089	1/1:145:0,145:0:0:145:5142:-462.914,-43.6494,0	1/1:119:0,117:0:0:117:4142:-372.678,-35.2205,0	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:84:48,36:48:1715:36:1284:-90.3056,0,-129.348	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	0/1:18:8,10:8:288:10:360:-27.0053,0,-20.8489	1/1:72:0,71:0:0:71:2501:-225.127,-21.3731,0	0/1:20:9,11:9:324:11:382:-28.6918,0,-23.4853	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/1:12:7,5:7:252:5:171:-12.1131,0,-19.4166	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:99:53,46:53:1896:46:1636:-117.725,0,-141.116	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:231:143,88:143:5121:88:3139:-213.197,0,-391.492	0/1:158:77,81:77:2764:81:2873:-211.188,0,-201.438	0/1:75:44,31:44:1572:31:1107:-77.3629,0,-119.194	0/1:49:22,27:22:777:27:935:-69.7117,0,-55.4999	1/1:136:1,135:1:36:135:4811:-429.546,-37.3418,0	1/1:109:1,107:1:36:107:3794:-338.061,-29.2728,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:39:18,21:18:648:21:736:-54.8222,0,-46.9117	0/1:76:46,30:46:1637:30:1076:-74.2746,0,-124.738	1/1:44:0,44:0:0:44:1573:-141.86,-13.2453,0	0/1:109:55,54:55:1957:54:1918:-140.085,0,-143.591	1/1:63:0,63:0:0:63:2239:-201.773,-18.9649,0	1/1:110:0,110:0:0:110:3908:-351.914,-33.1133,0	1/1:106:0,106:0:0:106:3788:-341.119,-31.9092,0	0/1:45:18,27:18:620:27:955:-72.7185,0,-42.5738	1/1:77:1,76:1:36:76:2692:-238.925,-19.581,0	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	1/1:86:0,86:0:0:86:3044:-274.185,-25.8886,0	0/1:64:22,42:22:788:42:1500:-116.027,0,-51.8725	1/1:190:0,190:0:0:190:6788:-610.994,-57.1957,0	0/1:92:34,58:34:1220:58:2058:-157.796,0,-82.412	0/1:58:27,31:27:972:31:1104:-82.2109,0,-70.3382	1/1:61:0,61:0:0:61:2168:-195.387,-18.3628,0	0/1:105:55,50:55:1976:50:1784:-129.235,0,-146.504	0/1:45:27,18:27:968:18:644:-44.7442,0,-73.891	1/1:36:1,35:1:36:35:1252:-109.387,-7.23881,0	0/1:46:25,21:25:892:21:752:-54.1589,0,-66.7523	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:68:38,30:38:1353:30:1068:-75.962,0,-101.598	0/1:33:24,9:24:864:9:316:-18.8449,0,-68.1486	1/1:70:0,70:0:0:70:2473:-222.823,-21.0721,0	1/1:58:0,58:0:0:58:2072:-186.747,-17.4597,0
chr05	26879329	.	TAACG	CAACA,CAACG	144095	PASS	AB=0.494358,0.499238;ABP=3.9169,3.02686;AC=136,52;AF=0.723404,0.276596;AN=188;AO=5340,1650;CIGAR=1X3M1X,1X4M;DP=7037;DPB=7037.4;DPRA=0,0.90805;EPP=11564,3551.28;EPPR=0;GTI=3;LEN=5,1;MEANALT=2.08511,2.41667;MQM=59.923,59.9285;MQMR=0;NS=94;NUMALT=2;ODDS=0.574583;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=183586,58165;QR=0;RO=0;RPL=5336,1646;RPP=11564,3551.28;RPPR=0;RPR=4,4;RUN=1,1;SAF=5340,1650;SAP=11598.7,3585.94;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:17:0,9,7:0:0:9,7:310,239:-44.6991,-19.5091,-16.7998,-25.3006,0,-23.1934	1/1:92:0,92,0:0:0:92,0:3120,0:-281.034,-27.6948,0,-281.034,-27.6948,-281.034	1/2:63:0,41,21:0:0:41,21:1403,732:-173.395,-59.5205,-47.1783,-113.861,0,-107.54	1/1:201:0,200,0:0:0:200,0:6916,0:-622.062,-60.206,0,-622.062,-60.206,-622.062	1/2:24:0,19,5:0:0:19,5:661,180:-68.7835,-15.0469,-9.32734,-54.0939,0,-52.5887	1/2:26:0,12,14:0:0:12,14:427,496:-75.5606,-40.7598,-37.1475,-35.1557,0,-30.9413	1/2:90:0,54,33:0:0:54,33:1875,1172:-247.966,-95.5429,-79.2873,-152.464,0,-142.53	1/1:173:0,173,0:0:0:173,0:5963,0:-536.754,-52.0782,0,-536.754,-52.0782,-536.754	1/2:72:0,15,57:0:0:15,57:508,1993:-203.658,-162.472,-157.957,-41.5269,0,-24.3682	1/1:150:0,149,1:0:0:149,1:5111,36:-459.364,-44.8535,0,-456.427,-41.5562,-456.126	1/1:20:0,20,0:0:0:20,0:673,0:-60.883,-6.0206,0,-60.883,-6.0206,-60.883	1/1:42:0,42,0:0:0:42,0:1444,0:-130.253,-12.6433,0,-130.253,-12.6433,-130.253	1/2:55:0,27,28:0:0:27,28:908,982:-153.818,-80.2628,-72.135,-73.8979,0,-65.4691	1/2:43:0,23,19:0:0:23,19:800,676:-120.141,-55.0983,-48.1746,-65.0446,0,-59.325	1/2:52:0,23,29:0:0:23,29:757,1003:-143.021,-81.8466,-74.9229,-61.5106,0,-52.7807	1/1:40:0,40,0:0:0:40,0:1332,0:-120.172,-12.0412,0,-120.172,-12.0412,-120.172	1/2:33:0,13,20:0:0:13,20:439,683:-91.3435,-55.7625,-51.8491,-35.9201,0,-29.8995	1/1:43:0,43,0:0:0:43,0:1476,0:-133.131,-12.9443,0,-133.131,-12.9443,-133.131	1/2:25:0,16,9:0:0:16,9:568,309:-71.7199,-25.4314,-20.615,-46.6358,0,-43.9266	1/2:93:0,37,56:0:0:37,56:1269,1963:-263.109,-160.085,-148.947,-103.37,0,-86.5123	1/2:138:0,75,63:0:0:75,63:2621,2226:-394.85,-181.639,-159.062,-213.562,0,-194.598	1/2:67:0,31,36:0:0:31,36:1073,1275:-191.411,-104.215,-94.8833,-87.5453,0,-76.7082	1/2:55:0,28,27:0:0:28,27:968,946:-155.961,-77.3074,-68.8786,-79.0017,0,-70.8739	1/2:54:0,45,6:0:0:45,6:1564,199:-143.258,-16.0922,-2.54584,-127.162,0,-125.356	1/1:38:0,38,0:0:0:38,0:1314,0:-118.558,-11.4391,0,-118.558,-11.4391,-118.558	1/1:369:0,366,0:0:0:366,0:12552,0:-1129.25,-110.177,0,-1129.25,-110.177,-1129.25	1/1:99:0,97,0:0:0:97,0:3348,0:-301.257,-29.1999,0,-301.257,-29.1999,-301.257	1/2:16:0,7,9:0:0:7,9:238,315:-45.2785,-25.978,-23.8707,-19.6447,0,-16.9355	1/2:225:0,110,113:0:0:110,113:3813,3986:-634.544,-324.631,-291.518,-309.976,0,-275.959	1/1:139:0,133,4:0:0:133,4:4481,129:-403.146,-40.037,0,-392.745,-29.6606,-391.541	1/1:129:0,128,0:0:0:128,0:4454,0:-400.742,-38.5318,0,-400.742,-38.5318,-400.742	1/2:10:0,5,5:0:0:5,5:176,180:-29.3712,-15.0469,-13.5418,-14.6802,0,-13.175	1/1:6:0,6,0:0:0:6,0:215,0:-19.6992,-1.80618,0,-19.6992,-1.80618,-19.6992	1/1:3:0,3,0:0:0:3,0:101,0:-9.42353,-0.90309,0,-9.42353,-0.90309,-9.42353	1/1:4:0,4,0:0:0:4,0:133,0:-12.2986,-1.20412,0,-12.2986,-1.20412,-12.2986	1/1:1:0,1,0:0:0:1,0:29,0:-2.89966,-0.30103,0,-2.89966,-0.30103,-2.89966	1/2:136:0,64,71:0:0:64,71:2179,2465:-377.176,-200.409,-181.143,-176.839,0,-155.466	1/1:236:0,235,1:0:0:235,1:8060,36:-724.908,-70.7421,0,-721.971,-67.4448,-721.67	1/1:42:0,42,0:0:0:42,0:1461,0:-131.784,-12.6433,0,-131.784,-12.6433,-131.784	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:110:0,64,45:0:0:64,45:2185,1596:-307.347,-130.063,-110.797,-177.312,0,-163.765	1/1:17:0,17,0:0:0:17,0:597,0:-54.0583,-5.11751,0,-54.0583,-5.11751,-54.0583	1/2:55:0,29,26:0:0:29,26:1020,911:-157.503,-74.4782,-65.7483,-83.3759,0,-75.5491	1/2:45:0,17,28:0:0:17,28:578,982:-127.011,-80.1329,-75.0154,-47.2222,0,-38.7933	1/1:48:0,48,0:0:0:48,0:1665,0:-150.128,-14.4494,0,-150.128,-14.4494,-150.128	1/1:51:0,47,0:0:0:47,0:1630,0:-146.686,-14.1484,0,-146.686,-14.1484,-146.686	1/2:71:0,33,38:0:0:33,38:1122,1339:-200.362,-109.359,-99.4245,-91.3492,0,-79.9101	1/1:162:0,157,2:0:0:157,2:5371,72:-483.193,-47.2617,0,-477.318,-41.3802,-476.716	1/2:109:0,45,64:0:0:45,64:1549,2288:-312.717,-186.916,-173.369,-126.151,0,-106.885	1/1:146:0,146,0:0:0:146,0:5063,0:-455.815,-43.9504,0,-455.815,-43.9504,-455.815	1/1:121:0,121,0:0:0:121,0:4237,0:-381.517,-36.4246,0,-381.517,-36.4246,-381.517	1/2:22:0,13,9:0:0:13,9:448,316:-62.4566,-26.0696,-22.1562,-36.7353,0,-34.026	1/2:83:0,36,46:0:0:36,46:1204,1644:-231.456,-134.041,-123.204,-97.3995,0,-83.5521	1/1:67:0,66,0:0:0:66,0:2233,0:-200.933,-19.868,0,-200.933,-19.868,-200.933	1/2:18:0,10,8:0:0:10,8:344,288:-51.5594,-23.8592,-20.8489,-28.0518,0,-25.6436	1/1:75:0,74,0:0:0:74,0:2546,0:-229.08,-22.2762,0,-229.08,-22.2762,-229.08	1/2:20:0,11,9:0:0:11,9:379,315:-56.7602,-25.978,-22.6666,-31.1296,0,-28.4203	1/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chr05	26879334	.	G	A	27076.6	PASS	AB=0.512287;ABP=7.17263;AC=51;AF=0.271277;AN=188;AO=1641;CIGAR=1X;DP=6881;DPB=6881;DPRA=0.825108;EPP=3540.39;EPPR=11309.9;GTI=2;LEN=1;MEANALT=1.05085;MQM=59.9281;MQMR=59.9352;NS=94;NUMALT=1;ODDS=0.815832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58097;QR=187202;RO=5235;RPL=1638;RPP=3540.39;RPPR=11309.9;RPR=3;RUN=1;SAF=1641;SAP=3566.4;SAR=0;SRF=5235;SRP=11370.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/1:63:41,22:41:1467:22:792:-52.6408,0,-113.36	0/0:194:194,0:194:6951:0:0:0,-58.3998,-625.595	0/1:23:18,5:18:640:5:167:-8.43472,0,-51.0056	0/1:27:12,15:12:432:15:536:-40.447,0,-31.0934	0/1:90:55,35:55:1972:35:1244:-85.172,0,-150.662	0/0:171:171,0:171:6136:0:0:0,-51.4761,-552.332	0/1:70:15,55:15:540:55:1959:-155.496,0,-27.8644	0/0:147:147,0:147:5237:0:0:0,-44.2514,-471.236	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9546	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:53:26,27:26:932:27:956:-70.4011,0,-68.2443	0/1:45:24,21:24:856:21:731:-52.5641,0,-63.8148	0/1:53:22,31:22:775:31:1091:-82.5432,0,-54.115	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/1:32:13,19:13:464:19:671:-51.0805,0,-32.4645	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:24:15,9:15:540:9:316:-21.5541,0,-41.7118	0/1:93:36,57:36:1279:57:1998:-152.095,0,-87.4167	0/1:132:72,60:72:2583:60:2129:-152.141,0,-192.982	0/1:66:31,35:31:1107:35:1240:-92.0365,0,-80.0722	0/1:52:27,25:27:968:25:892:-64.9285,0,-71.7838	0/0:51:47,4:47:1684:4:144:0,-2.03891,-138.533	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:357:357,0:357:12810:0:0:0,-107.468,-1152.63	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.292	0/1:18:7,11:7:248:11:392:-30.2015,0,-17.2457	0/1:225:110,114:110:3944:114:4045:-296.449,0,-287.361	0/0:136:132,4:132:4725:4:140:0,-27.9955,-412.458	0/0:127:127,0:127:4572:0:0:0,-38.2308,-411.643	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:129:59,70:59:2094:70:2483:-184.845,0,-149.896	0/0:229:229,0:229:8159:0:0:0,-68.9359,-734.327	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:107:63,44:63:2255:44:1519:-104.784,0,-170.945	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/1:55:28,27:28:993:27:968:-70.8807,0,-73.1177	0/1:41:15,26:15:532:26:908:-69.5625,0,-35.8709	0/0:47:46,1:46:1639:1:36:0,-10.5501,-144.193	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.195	0/1:71:33,38:33:1175:38:1330:-98.5942,0,-84.6838	0/0:160:158,2:158:5641:2:72:0,-41.3281,-500.345	0/1:107:42,64:42:1493:64:2276:-172.883,0,-102.44	0/0:143:143,0:143:5131:0:0:0,-43.0473,-461.919	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.219	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:78:35,43:35:1252:43:1521:-113.701,0,-88.8768	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.0053	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:10:5,5:5:180:5:172:-12.8077,0,-13.5418	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:98:46,52:46:1656:52:1848:-137.099,0,-119.827	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:229:92,137:92:3296:137:4881:-370.508,0,-227.922	0/1:161:86,75:86:3041:75:2657:-190.91,0,-225.318	0/1:73:32,41:32:1148:41:1451:-108.911,0,-81.6546	0/1:49:28,21:28:995:21:732:-51.451,0,-75.1135	0/0:138:135,1:135:4826:1:32:0,-38.074,-431.264	0/0:110:109,1:109:3920:1:36:0,-29.515,-349.379	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/1:37:21,16:21:752:16:564:-39.9522,0,-56.8681	0/1:75:30,45:30:1072:45:1604:-122.073,0,-74.2152	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:107:53,54:53:1904:54:1870:-136.365,0,-139.428	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.498	0/0:108:108,0:108:3867:0:0:0,-32.5112,-348.224	0/0:109:108,1:108:3876:1:36:0,-29.214,-345.435	0/1:46:27,19:27:959:19:672:-46.9595,0,-72.778	0/0:78:77,1:77:2742:1:36:0,-19.8821,-243.423	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:90:89,0:89:3195:0:0:0,-26.7917,-287.413	0/1:63:43,20:43:1540:20:712:-45.4418,0,-119.925	0/0:187:187,0:187:6708:0:0:0,-56.2926,-603.794	0/1:94:59,35:59:2099:35:1244:-83.9678,0,-160.88	0/1:58:30,28:30:1055:28:996:-72.4951,0,-77.8003	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.031	0/1:106:51,55:51:1815:55:1964:-145.125,0,-131.722	0/1:46:19,27:19:675:27:947:-71.6964,0,-47.2296	0/0:35:35,0:35:1219:0:0:0,-10.536,-110.013	0/1:47:22,25:22:788:25:892:-66.4513,0,-57.0964	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:67:29,38:29:1036:38:1343:-101,0,-73.3849	0/1:34:8,26:8:284:26:920:-72.882,0,-15.6683	0/0:72:72,0:72:2562:0:0:0,-21.6742,-230.829	0/0:59:59,0:59:2099:0:0:0,-17.7608,-189.179
chr05	26891295	.	TCA	CCA	117776	PASS	AB=0.36637;ABP=926.344;AC=133;AF=0.707447;AN=188;AO=5939;CIGAR=1X2M;DP=9732;DPB=9731.67;DPRA=34.871;EPP=12899.4;EPPR=8204.66;GTI=9;LEN=1;MEANALT=1.15054;MQM=59.6767;MQMR=59.8351;NS=94;NUMALT=1;ODDS=1.38217;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211591;QR=132368;RO=3777;RPL=6;RPP=12847.3;RPPR=141.613;RPR=5933;RUN=1;SAF=6;SAP=12847.3;SAR=5933;SRF=1643;SRP=141.613;SRR=2134;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:112:62,50:62:2166:50:1787:-127.352,0,-161.482	1/1:56:3,53:3:100:53:1899:-161.841,-7.52782,0	0/1:162:110,52:110:3879:52:1859:-118.797,0,-300.517	1/1:172:0,172:0:0:172:6115:-550.4,-51.7772,0	0/1:121:79,42:79:2781:42:1508:-99.59,0,-214.087	0/1:91:46,45:46:1589:45:1593:-116.261,0,-115.901	0/1:197:123,74:123:4270:74:2656:-179.98,0,-325.015	1/1:223:3,220:3:97:220:7865:-698.41,-58.0792,0	0/1:219:140,79:140:4856:79:2814:-187.551,0,-371.18	1/1:102:0,102:0:0:102:3623:-326.248,-30.7051,0	1/1:64:0,64:0:0:64:2274:-204.912,-19.2659,0	1/1:132:0,132:0:0:132:4667:-420.162,-39.736,0	0/1:134:86,48:86:2999:48:1689:-111.94,0,-229.784	0/1:104:61,43:61:2151:43:1523:-106.05,0,-162.55	0/1:107:86,21:86:3010:21:737:-34.4404,0,-238.919	1/1:89:0,89:0:0:89:3176:-286.014,-26.7917,0	0/1:60:41,19:41:1445:19:676:-43.098,0,-112.284	1/1:33:0,33:0:0:33:1166:-105.221,-9.93399,0	0/1:49:33,16:33:1140:16:576:-37.4245,0,-88.1066	0/1:172:113,59:113:3987:59:2115:-138.838,0,-307.233	0/1:216:133,82:133:4613:82:2903:-196.41,0,-350.327	0/1:117:96,21:96:3371:21:734:-31.1586,0,-268.386	0/1:177:109,68:109:3840:68:2444:-166.918,0,-292.512	0/1:127:22,104:22:770:104:3690:-293.975,0,-31.3299	1/1:84:0,84:0:0:84:3012:-271.297,-25.2865,0	1/1:175:0,175:0:0:175:6231:-560.877,-52.6803,0	1/1:154:0,154:0:0:154:5506:-495.633,-46.3586,0	0/1:52:33,19:33:1152:19:680:-45.8756,0,-88.3312	0/1:292:209,83:209:7351:83:2944:-177.286,0,-573.726	0/1:129:17,112:17:610:112:4003:-321.599,0,-16.4	1/1:72:1,70:1:34:70:2508:-222.554,-18.3241,0	0/1:14:6,8:6:203:8:288:-22.053,0,-14.3868	1/1:20:0,20:0:0:20:707:-63.9527,-6.0206,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:223:148,75:148:5153:75:2659:-172.423,0,-396.667	1/1:62:0,62:0:0:62:2209:-199.048,-18.6639,0	1/1:47:0,47:0:0:47:1656:-149.309,-14.1484,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:189:118,70:118:4128:70:2516:-169.5,0,-314.746	1/1:35:0,35:0:0:35:1243:-111.936,-10.5361,0	0/1:234:131,103:131:4630:103:3683:-261,0,-346.428	0/1:90:60,30:60:2125:30:1065:-69.065,0,-164.408	1/1:51:0,51:0:0:51:1836:-165.516,-15.3525,0	1/1:88:0,88:0:0:88:3110:-280.124,-26.4906,0	0/1:120:76,44:76:2655:44:1559:-104.371,0,-203.071	1/1:160:0,160:0:0:160:5668:-510.231,-48.1648,0	0/1:78:46,32:46:1621:32:1133:-78.794,0,-122.697	1/1:101:0,101:0:0:101:3599:-324.11,-30.404,0	1/1:95:1,94:1:36:94:3326:-295.956,-24.9996,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:161:120,41:120:4238:41:1464:-83.5812,0,-333.133	1/1:63:0,63:0:0:63:2268:-204.321,-18.9649,0	0/1:6:4,2:4:142:2:72:-5.03054,0,-11.323	1/1:95:0,95:0:0:95:3412:-307.28,-28.5979,0	0/1:97:51,46:51:1799:46:1648:-119.375,0,-132.99	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:14:12,2:12:426:2:72:-2.6223,0,-34.4635	1/1:73:0,72:0:0:72:2579:-232.035,-21.6742,0	0/1:104:67,37:67:2337:37:1309:-86.8008,0,-179.281	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:170:109,61:109:3879:61:2183:-145.558,0,-298.103	0/1:211:139,72:139:4867:72:2588:-169.644,0,-374.663	0/1:53:43,10:43:1533:10:360:-16.7897,0,-122.308	0/1:102:70,32:70:2473:32:1131:-71.388,0,-192.109	1/1:158:0,158:0:0:158:5661:-509.605,-47.5627,0	1/1:79:1,78:1:36:78:2781:-246.9,-20.1831,0	0/1:40:25,15:25:876:15:532:-36.1654,0,-67.1154	0/1:63:37,26:37:1297:26:923:-64.4219,0,-98.0656	0/1:53:38,15:38:1342:15:532:-32.2585,0,-105.108	0/1:29:4,25:4:133:25:896:-72.2234,0,-3.56839	0/1:120:61,59:61:2138:59:2098:-152.956,0,-156.553	1/1:105:0,105:0:0:105:3724:-335.326,-31.6082,0	1/1:201:0,201:0:0:201:7131:-641.638,-60.507,0	1/1:149:0,149:0:0:149:5327:-479.442,-44.8535,0	0/1:239:164,73:164:5704:73:2592:-161.76,0,-441.676	1/1:116:1,115:1:36:115:4132:-368.25,-31.3212,0	0/1:45:20,25:20:682:25:896:-67.4058,0,-48.1496	1/1:109:0,109:0:0:109:3916:-352.618,-32.8123,0	0/1:166:101,64:101:3578:64:2283:-155.764,0,-272.251	1/1:229:2,225:2:72:225:8031:-715.98,-61.8321,0	0/1:76:55,21:55:1892:21:752:-45.128,0,-147.672	0/1:102:68,34:68:2414:34:1194:-77.054,0,-186.798	1/1:45:0,45:0:0:45:1592:-143.474,-13.5464,0	0/1:178:125,53:125:4339:53:1878:-115.707,0,-336.965	0/1:35:25,7:25:858:7:243:-12.2364,0,-67.5587	1/1:63:0,62:0:0:62:2190:-197.075,-18.6639,0	0/1:89:68,21:68:2395:21:756:-41.5674,0,-189.001	1/1:41:0,40:0:0:40:1401:-126.146,-12.0412,0	0/1:93:72,20:72:2465:20:695:-34.8128,0,-194.045	0/1:105:91,14:91:3223:14:504:-14.0899,0,-258.685	1/1:121:0,121:0:0:121:4314:-388.409,-36.4246,0	1/1:92:0,92:0:0:92:3257:-293.344,-27.6948,0
chr05	26899004	.	C	A	66083.3	PASS	AB=0.504539;ABP=3.38483;AC=132;AF=0.725275;AN=182;AO=3154;CIGAR=1X;DP=4197;DPB=4197;DPRA=46.6222;EPP=6851.83;EPPR=2259.17;GTI=2;LEN=1;MEANALT=1.03333;MQM=59.9708;MQMR=59.9663;NS=91;NUMALT=1;ODDS=0.50415;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112617;QR=37187;RO=1039;RPL=0;RPP=6851.83;RPPR=2259.17;RPR=3154;RUN=1;SAF=3154;SAP=6851.83;SAR=0;SRF=1039;SRP=2259.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:12,10:12:428:10:348:-25.0325,0,-32.2361	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:66:31,35:31:1108:35:1252:-93.1171,0,-80.163	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	0/1:36:14,22:14:504:22:792:-60.7686,0,-34.861	0/1:37:19,18:19:680:18:648:-47.5138,0,-50.3911	0/1:47:25,22:25:888:22:792:-57.4573,0,-66.0335	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	0/1:47:32,15:32:1152:15:536:-34.0541,0,-89.8417	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:14:0,14:0:0:14:498:-45.155,-4.21442,0	1/1:58:0,57:0:0:57:2044:-183.872,-17.1587,0	0/1:41:17,24:17:603:24:849:-64.3832,0,-42.2573	0/1:31:12,19:12:423:19:684:-52.5584,0,-29.0731	0/1:31:9,22:9:320:22:792:-62.2737,0,-19.8104	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:66:25,41:25:900:41:1468:-112.548,0,-61.453	0/1:61:33,28:33:1184:28:1000:-71.9525,0,-88.5055	0/1:38:26,12:26:936:12:432:-27.7821,0,-73.1203	0/1:47:27,20:27:972:20:720:-50.9804,0,-73.6495	0/1:20:2,18:2:72:18:644:-52.27,0,-0.816122	1/1:45:0,45:0:0:45:1620:-145.772,-13.5464,0	1/1:157:0,157:0:0:157:5597:-503.853,-47.2617,0	1/1:125:0,125:0:0:125:4469:-402.379,-37.6288,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:130:63,67:63:2268:67:2404:-177.483,0,-165.248	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	1/1:66:0,66:0:0:66:2359:-212.568,-19.868,0	0/1:9:3,6:3:104:6:212:-16.7155,0,-6.99354	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:99:49,50:49:1743:50:1796:-132.12,0,-127.352	1/1:81:0,81:0:0:81:2855:-257.185,-24.3834,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:58:24,34:24:860:34:1209:-91.6544,0,-60.2621	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:91:43,48:43:1548:48:1724:-128.052,0,-112.219	0/1:19:14,5:14:500:5:171:-10.0056,0,-39.6166	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:62:0,62:0:0:62:2205:-198.714,-18.6639,0	0/1:72:34,38:34:1216:38:1352:-100.306,0,-88.0724	1/1:150:0,148:0:0:148:5253:-472.539,-44.5524,0	0/1:59:27,32:27:968:32:1148:-85.8691,0,-69.6766	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:63:1,62:1:36:62:2201:-194.756,-15.3666,0	.:.:.:.:.:.:.:.	0/1:44:20,24:20:716:24:856:-64.1158,0,-51.5224	1/1:31:0,31:0:0:31:1097:-99.0389,-9.33193,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:17:14,3:14:504:3:108:-4.95766,0,-40.5806	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:66:29,37:29:1031:37:1328:-99.9543,0,-73.2323	.:.:.:.:.:.:.:.	0/1:111:58,53:58:2076:53:1870:-135.161,0,-153.696	0/1:100:63,37:63:2245:37:1328:-89.7192,0,-172.209	0/1:23:11,12:11:388:12:432:-32.2975,0,-28.3337	0/1:32:13,19:13:468:19:682:-52.0769,0,-32.8267	1/1:80:0,80:0:0:80:2827:-254.665,-24.0824,0	1/1:124:0,124:0:0:124:4428:-398.691,-37.3277,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:32:17,15:17:608:15:529:-38.3077,0,-45.4191	0/1:33:18,15:18:626:15:536:-38.6408,0,-46.7293	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:75:37,38:37:1324:38:1352:-99.4031,0,-96.8672	1/1:16:0,16:0:0:16:565:-51.1796,-4.81648,0	1/1:68:0,68:0:0:68:2429:-218.864,-20.47,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	0/1:67:42,25:42:1508:25:885:-59.7984,0,-115.846	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:33:0,32:0:0:32:1136:-102.189,-9.63296,0	0/1:51:27,24:27:968:24:853:-61.7381,0,-72.0848	1/1:92:0,92:0:0:92:3273:-294.791,-27.6948,0	0/1:49:21,28:21:752:28:1000:-75.5649,0,-53.2558	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:47:19,28:19:684:28:996:-75.8065,0,-47.7419	0/1:20:10,10:10:360:10:356:-26.3606,0,-26.7237	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:33:15,18:15:540:18:644:-48.3566,0,-39.0025	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:51:24,27:24:864:27:966:-71.9043,0,-62.73	0/1:26:17,9:17:612:9:324:-21.6791,0,-47.5867	1/1:76:0,76:0:0:76:2721:-245.131,-22.8783,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0
chr05	26899049	.	A	G	66176.7	PASS	AB=0.504993;ABP=3.46566;AC=132;AF=0.725275;AN=182;AO=3157;CIGAR=1X;DP=4205;DPB=4205;DPRA=46.7111;EPP=6797.68;EPPR=2259.2;GTI=2;LEN=1;MEANALT=1.01111;MQM=59.9582;MQMR=59.9666;NS=91;NUMALT=1;ODDS=0.569391;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112419;QR=37407;RO=1047;RPL=3151;RPP=6806.33;RPPR=2259.2;RPR=6;RUN=1;SAF=3156;SAP=6849.67;SAR=1;SRF=1047;SRP=2276.54;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:11,9:11:392:9:320:-23.1218,0,-29.5995	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:67:31,36:31:1097:36:1296:-96.7749,0,-78.869	1/1:84:0,84:0:0:84:2989:-269.241,-25.2865,0	0/1:37:14,23:14:500:23:813:-62.351,0,-34.1981	0/1:39:21,18:21:744:18:640:-46.1891,0,-55.5442	0/1:46:26,20:26:913:20:716:-50.9203,0,-68.6318	1/1:77:0,77:0:0:77:2759:-248.551,-23.1793,0	0/1:47:32,15:32:1144:15:536:-34.4241,0,-89.1211	1/1:35:0,35:0:0:35:1237:-111.632,-10.5361,0	1/1:16:0,16:0:0:16:553:-50.094,-4.81648,0	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	0/1:43:18,25:18:633:25:890:-67.456,0,-44.3508	0/1:31:13,18:13:468:18:636:-48.2355,0,-33.1277	0/1:31:9,22:9:324:22:780:-61.1911,0,-20.1739	1/1:29:0,29:0:0:29:1016:-91.6607,-8.72987,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:67:25,42:25:896:42:1504:-115.486,0,-60.7913	0/1:63:33,30:33:1172:30:1053:-76.1137,0,-86.8226	0/1:39:26,13:26:936:13:468:-30.7195,0,-72.8193	0/1:49:27,22:27:972:22:784:-56.1334,0,-73.0474	0/1:20:2,18:2:72:18:640:-51.9087,0,-0.816122	1/1:45:1,44:1:36:44:1571:-137.765,-9.94808,0	1/1:160:0,159:0:0:159:5637:-507.091,-47.8638,0	1/1:126:0,126:0:0:126:4519:-406.876,-37.9298,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:128:62,66:62:2224:66:2360:-174.127,0,-161.892	1/1:50:0,50:0:0:50:1766:-159.219,-15.0515,0	1/1:65:0,65:0:0:65:2311:-208.249,-19.567,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:98:50,48:50:1796:48:1698:-123.604,0,-132.421	1/1:85:0,85:0:0:85:3024:-272.392,-25.5876,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:58:24,34:24:864:34:1224:-93.0064,0,-60.6228	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:89:41,48:41:1457:48:1720:-128.294,0,-104.632	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2796	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:66:0,66:0:0:66:2343:-211.091,-19.868,0	0/1:69:32,37:32:1148:37:1320:-98.3309,0,-82.8588	1/1:148:0,148:0:0:148:5267:-474.081,-44.5524,0	0/1:60:28,32:28:1008:32:1133:-84.2149,0,-72.9746	1/1:50:0,50:0:0:50:1749:-157.689,-15.0515,0	1/1:63:1,62:1:36:62:2216:-196.106,-15.3666,0	.:.:.:.:.:.:.:.	0/1:47:21,26:21:725:26:924:-69.3292,0,-51.4193	1/1:30:0,30:0:0:30:1060:-95.7094,-9.0309,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	1/1:65:0,65:0:0:65:2323:-209.33,-19.567,0	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	1/1:41:1,40:1:36:40:1419:-124.408,-8.74396,0	0/1:65:29,36:29:1032:36:1280:-95.9363,0,-73.6256	.:.:.:.:.:.:.:.	0/1:109:57,52:57:2039:52:1872:-135.947,0,-150.969	0/1:102:62,40:62:2201:40:1421:-97.4812,0,-167.649	0/1:23:11,12:11:388:12:428:-31.9351,0,-28.3337	0/1:33:13,20:13:464:20:711:-54.3817,0,-32.1635	1/1:81:0,81:0:0:81:2863:-257.906,-24.3834,0	1/1:121:0,121:0:0:121:4316:-388.615,-36.4246,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:32:17,15:17:612:15:526:-38.0373,0,-45.7805	0/1:33:18,15:18:644:15:540:-39.0025,0,-48.3566	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:75:36,39:36:1296:39:1380:-101.919,0,-94.3491	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:66:0,66:0:0:66:2342:-211.038,-19.868,0	1/1:56:0,56:0:0:56:2008:-180.992,-16.8577,0	0/1:67:42,25:42:1504:25:878:-59.1619,0,-115.486	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:51:27,24:27:968:24:856:-62.0086,0,-72.0848	1/1:92:0,92:0:0:92:3291:-296.409,-27.6948,0	0/1:50:21,29:21:747:29:1040:-78.8629,0,-52.5028	0/1:26:14,12:14:495:12:428:-31.032,0,-37.0563	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	0/1:47:20,27:20:712:27:964:-72.9284,0,-50.2582	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:35:17,18:17:612:18:640:-47.3933,0,-44.8774	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:49:24,25:24:860:25:896:-66.2099,0,-62.9714	0/1:27:17,10:17:612:10:352:-23.8904,0,-47.2856	1/1:74:0,74:0:0:74:2632:-237.125,-22.2762,0	1/1:54:2,52:2:72:52:1856:-160.483,-9.4189,0
chr05	26899724	.	T	G	24536.8	PASS	AB=0.503739;ABP=3.36754;AC=50;AF=0.268817;AN=186;AO=1491;CIGAR=1X;DP=6012;DPB=6012;DPRA=0.913823;EPP=3240.68;EPPR=9818.07;GTI=0;LEN=1;MEANALT=1.01754;MQM=59.9725;MQMR=59.9876;NS=93;NUMALT=1;ODDS=1.78187;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52975;QR=160922;RO=4520;RPL=1491;RPP=3240.68;RPPR=9818.07;RPR=0;RUN=1;SAF=1491;SAP=3240.68;SAR=0;SRF=4520;SRP=9818.07;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:4,9:4:144:9:316:-24.8655,0,-9.40023	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.185	0/1:93:44,49:44:1580:49:1743:-129.158,0,-114.496	0/0:111:109,1:109:3900:1:36:0,-29.8749,-347.596	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:37:16,21:16:576:21:741:-55.8743,0,-41.0369	0/0:132:132,0:132:4679:0:0:0,-39.736,-421.27	0/1:24:9,15:9:311:15:536:-41.3501,0,-21.099	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.871	0/0:119:119,0:119:4239:0:0:0,-35.8226,-381.691	0/1:72:36,36:36:1276:36:1264:-92.3856,0,-93.4689	0/1:45:17,28:17:584:28:964:-73.5194,0,-39.3344	0/1:71:42,29:42:1496:29:1027:-71.369,0,-113.561	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.414	0/1:27:10,17:10:360:17:608:-46.9242,0,-24.6165	0/0:31:31,0:31:1088:0:0:0,-9.33193,-98.2292	0/1:33:10,23:10:360:23:800:-62.3818,0,-22.8103	0/1:129:65,64:65:2301:64:2285:-167.077,0,-168.517	0/1:52:34,18:34:1220:18:636:-41.9145,0,-94.4532	0/1:69:26,43:26:919:43:1511:-115.511,0,-62.2551	0/1:43:21,22:21:738:22:792:-58.6614,0,-53.7971	0/0:29:27,2:27:953:2:72:0,-1.89315,-79.2466	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:134:134,0:134:4779:0:0:0,-40.338,-430.268	0/0:163:163,0:163:5807:0:0:0,-49.0679,-522.74	0/1:34:18,16:18:648:16:559:-40.4026,0,-48.4169	0/1:215:124,91:124:4419:91:3247:-227.73,0,-333.162	0/0:66:65,1:65:2320:1:36:0,-16.2697,-205.462	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	.:.:.:.:.:.:.:.	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:191:97,94:97:3459:94:3348:-244.037,0,-254.026	0/0:89:89,0:89:3160:0:0:0,-26.7917,-284.627	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:70:41,29:41:1460:29:1040:-72.8423,0,-110.624	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/1:70:28,42:28:1000:42:1485:-112.869,0,-69.2433	0/1:38:14,24:14:500:24:852:-65.5612,0,-33.897	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:85:41,44:41:1476:44:1580:-116.904,0,-107.549	0/0:156:155,1:155:5489:1:36:0,-43.3624,-490.539	0/1:79:50,29:50:1767:29:1040:-70.133,0,-135.528	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:107:107,0:107:3791:0:0:0,-32.2102,-341.389	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:81:42,39:42:1489:39:1376:-99.7525,0,-109.919	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:122:122,0:122:4346:0:0:0,-36.7257,-391.316	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/1:98:37,61:37:1316:61:2177:-166.695,0,-89.2409	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:154:88,66:88:3146:66:2368:-167.019,0,-237.006	0/1:132:60,72:60:2124:72:2568:-191.633,0,-151.5	0/1:30:20,10:20:701:10:360:-23.7134,0,-54.3808	0/1:78:44,34:44:1564:34:1202:-85.0051,0,-117.571	0/0:75:73,2:73:2604:2:72:0,-15.7405,-227.772	0/0:94:94,0:94:3322:0:0:0,-28.2968,-299.198	0/1:24:11,13:11:358:13:456:-34.1485,0,-25.3084	0/1:38:22,16:22:788:16:568:-40.0127,0,-59.8057	0/1:47:21,26:21:734:26:915:-68.5172,0,-52.232	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:65:38,27:38:1356:27:972:-68.231,0,-102.774	0/0:84:84,0:84:2994:0:0:0,-25.2865,-269.691	0/0:123:123,0:123:4391:0:0:0,-37.0267,-395.364	0/0:116:115,1:115:4128:1:36:0,-31.3212,-368.105	0/1:74:46,28:46:1652:28:1008:-68.7601,0,-126.692	0/0:60:59,1:59:2097:1:36:0,-14.4635,-185.4	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/1:70:42,28:42:1512:28:992:-68.5223,0,-115.303	0/0:160:160,0:160:5705:0:0:0,-48.1648,-513.566	0/1:57:36,21:36:1251:21:756:-51.2085,0,-95.7325	0/1:55:22,33:22:788:33:1172:-89.2308,0,-54.6881	0/0:58:58,0:58:2055:0:0:0,-17.4597,-185.221	0/1:120:68,52:68:2406:52:1834:-129.216,0,-180.673	0/1:22:7,15:7:248:15:540:-42.3139,0,-16.0415	0/0:67:67,0:67:2375:0:0:0,-20.169,-214.008	0/1:57:20,37:20:712:37:1294:-99.6008,0,-47.2479	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:65:21,44:21:752:44:1564:-121.484,0,-48.4393	0/1:88:22,66:22:792:66:2331:-183.56,0,-45.115	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/0:120:120,0:120:4263:0:0:0,-36.1236,-383.851
chr05	26930471	.	CGATT	GGATG,CGATG	422075	PASS	AB=0.508534,0.486322;ABP=8.42147,16.9104;AC=137,51;AF=0.728723,0.271277;AN=188;AO=13003,4193;CIGAR=1X3M1X,4M1X;DP=17288;DPB=17288.6;DPRA=0,1.04874;EPP=28238.7,9107.99;EPPR=20.3821;GTI=0;LEN=5,1;MEANALT=2.52128,2.79104;MQM=43.1177,50.891;MQMR=59.5;NS=94;NUMALT=2;ODDS=3.07096;PAIRED=0,0;PAIREDR=0;PAO=3.5,0.5;PQA=90,18;PQR=0;PRO=0;QA=447289,148789;QR=252;RO=8;RPL=7043,2136;RPP=198.88,6.24239;RPPR=4.09604;RPR=5960,2057;RUN=1,1;SAF=7043,2136;SAP=198.88,6.24239;SAR=5960,2057;SRF=3;SRP=4.09604;SRR=5;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:87:0,48,39:0:0:48,39:1651,1400:-232.45,-113.122,-98.6726,-119.662,0,-107.922	1/1:241:0,239,0:0:0:239,0:8144,0:-692.913,-71.9462,0,-692.913,-71.9462,-692.913	1/2:261:0,146,114:0:0:146,114:5094,4075:-703.192,-328.513,-284.562,-374.796,0,-340.479	1/1:356:0,356,0:0:0:356,0:12358,0:-992.761,-107.167,0,-992.761,-107.167,-992.761	1/2:42:0,24,18:0:0:24,18:827,636:-116.442,-51.2861,-44.0614,-65.498,0,-60.0794	1/2:71:0,23,47:0:0:23,47:791,1684:-197.598,-135.455,-128.531,-62.2289,0,-48.0805	1/2:224:0,120,102:0:0:120,102:4196,3634:-591.205,-293.337,-257.213,-297.945,0,-267.24	1/1:247:0,246,1:0:0:246,1:8474,36:-721.099,-74.0534,0,-718.162,-70.7561,-717.861	1/2:177:0,102,74:0:0:102,74:3574,2637:-472.257,-212.463,-181.758,-259.871,0,-237.594	1/1:168:0,167,0:0:0:167,0:5769,0:-486.442,-50.272,0,-486.442,-50.272,-486.442	1/1:150:0,149,1:0:0:149,1:5159,32:-420.61,-44.8535,0,-418.05,-41.9757,-417.749	1/1:202:0,197,1:0:0:197,1:6718,27:-550.01,-59.3029,0,-547.886,-57.1828,-547.585	1/2:159:0,76,82:0:0:76,82:2636,2898:-428.735,-234.121,-211.243,-194.706,0,-170.021	1/2:217:0,92,125:0:0:92,125:3011,4389:-581.361,-355.138,-327.443,-226.548,0,-188.919	1/2:196:0,99,97:0:0:99,97:3418,3429:-526.433,-276.704,-246.902,-250.061,0,-220.861	1/1:152:0,150,0:0:0:150,0:5095,0:-422.195,-45.1545,0,-422.195,-45.1545,-422.195	1/2:378:0,195,180:0:0:195,180:6333,6330:-1013.68,-513.368,-454.667,-500.34,0,-446.154	1/1:125:0,125,0:0:0:125,0:4196,0:-357.135,-37.6288,0,-357.135,-37.6288,-357.135	1/2:87:0,47,39:0:0:47,39:1552,1404:-225.859,-113.779,-99.6306,-112.11,0,-100.37	1/2:218:0,96,122:0:0:96,122:3336,4316:-596.808,-348.276,-319.377,-248.866,0,-212.14	1/2:355:0,199,155:0:0:199,155:6707,5484:-937.001,-442.131,-382.226,-494.913,0,-448.254	1/2:132:0,35,97:0:0:35,97:1201,3464:-372.667,-280.987,-270.451,-92.0129,0,-62.813	1/2:158:0,89,69:0:0:89,69:3093,2453:-414.022,-197.557,-170.766,-216.795,0,-196.024	1/1:230:0,224,5:0:0:224,5:7708,156:-639.482,-67.4307,0,-627.049,-54.923,-625.544	1/1:129:0,128,0:0:0:128,0:4413,0:-356.434,-38.5318,0,-356.434,-38.5318,-356.434	1/1:477:0,471,2:0:0:471,2:16283,72:-1323.05,-141.785,0,-1317.18,-135.882,-1316.58	1/1:440:0,439,0:0:0:439,0:15256,0:-1231.1,-132.152,0,-1231.1,-132.152,-1231.1	1/2:74:0,43,31:0:0:43,31:1474,1108:-198.978,-89.9103,-76.966,-109.405,0,-100.074	1/2:396:2,170,224:2:65:170,224:5987,7983:-1067.39,-640.48,-594.55,-422.272,0,-360.087	1/1:243:0,236,5:0:0:236,5:8000,180:-663.36,-71.0431,0,-648.809,-56.424,-647.304	1/1:199:0,197,1:0:0:197,1:6825,36:-568.259,-59.3029,0,-565.323,-56.3678,-565.022	1/2:32:0,19,13:0:0:19,13:683,455:-83.5059,-36.9401,-31.2206,-46.8956,0,-42.9822	1/1:33:0,33,0:0:0:33,0:1132,0:-93.8576,-9.93399,0,-93.8576,-9.93399,-93.8576	1/1:14:0,14,0:0:0:14,0:490,0:-42.2696,-4.21442,0,-42.2696,-4.21442,-42.2696	1/1:40:0,40,0:0:0:40,0:1371,0:-112.177,-12.0412,0,-112.177,-12.0412,-112.177	1/1:38:0,38,0:0:0:38,0:1331,0:-106.219,-11.4391,0,-106.219,-11.4391,-106.219	1/2:408:0,197,209:0:0:197,209:6694,7393:-1085.04,-598.244,-538.941,-486.907,0,-423.992	1/1:217:0,217,0:0:0:217,0:7464,0:-622.687,-65.3235,0,-622.687,-65.3235,-622.687	1/1:115:0,114,1:0:0:114,1:3901,36:-325.123,-34.3174,0,-322.185,-31.0202,-321.884	1/2:5:0,2,3:0:0:2,3:72,108:-14.4267,-9.12245,-8.52039,-5.64471,0,-4.74162	1/2:230:0,123,107:0:0:123,107:4168,3826:-626.3,-309.433,-272.407,-317.205,0,-284.995	1/1:67:0,66,0:0:0:66,0:2286,0:-185.597,-19.868,0,-185.597,-19.868,-185.597	1/2:310:0,157,151:0:0:157,151:5352,5372:-821.118,-430.339,-383.077,-390.845,0,-345.389	1/2:151:0,68,83:0:0:68,83:2357,2914:-408.337,-234.308,-213.838,-174.36,0,-149.375	1/1:120:0,120,0:0:0:120,0:4092,0:-335.872,-36.1236,0,-335.872,-36.1236,-335.872	1/1:202:0,199,0:0:0:199,0:6886,0:-559.237,-59.905,0,-559.237,-59.905,-559.237	1/2:178:0,85,93:0:0:85,93:2945,3322:-486.345,-269.048,-243.46,-217.633,0,-189.637	1/1:243:0,241,1:0:0:241,1:8368,36:-680.656,-72.5482,0,-677.721,-69.5941,-677.42	1/2:172:0,100,69:0:0:100,69:3463,2472:-454.967,-199.443,-169.34,-255.562,0,-234.791	1/1:330:0,327,0:0:0:327,0:11192,0:-943.412,-98.4368,0,-943.412,-98.4368,-943.412	1/1:299:0,295,2:0:0:295,2:10178,72:-833.214,-88.8039,0,-827.367,-82.9414,-826.765	1/2:25:0,15,10:0:0:15,10:533,360:-69.2937,-29.6269,-25.1115,-40.013,0,-37.0027	1/2:183:2,82,97:2:58:82,97:2825,3445:-480.428,-273.213,-253.143,-203.236,0,-178.652	1/1:198:0,198,0:0:0:198,0:6779,0:-584.637,-59.6039,0,-584.637,-59.6039,-584.637	1/2:26:0,10,16:0:0:10,16:346,576:-74.848,-4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chr05	26930482	.	ACTAC	GCTAC,GCTAT	202387	PASS	AB=0.52053,0.471523;ABP=19.594,34.918;AC=137,51;AF=0.728723,0.271277;AN=188;AO=6879,2154;CIGAR=1X4M,1X3M1X;DP=9093;DPB=10661.4;DPRA=0,1.03618;EPP=14888.5,4680.36;EPPR=9.52472;GTI=1;LEN=1,5;MEANALT=2.21277,2.65574;MQM=53.1862,56.7781;MQMR=54.3333;NS=94;NUMALT=2;ODDS=0.377365;PAIRED=0,0;PAIREDR=0;PAO=3921,3921;PQA=136308,136308;PQR=0;PRO=0;QA=239517,73074;QR=108;RO=3;RPL=954,0;RPP=7803.4,4680.36;RPPR=9.52472;RPR=5925,2154;RUN=1,1;SAF=948,0;SAP=7841.11,4680.36;SAR=5931,2154;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,10,11:0:0:10,11:356,380:-56.1401,-27.308,-24.2977,-25.4795,0,-22.1681	1/1:143:0,142,0:0:0:142,0:5074,0:-450.503,-42.7463,0,-450.503,-42.7463,-450.503	1/2:100:0,52,48:0:0:52,48:1844,1631:-272.837,-123.08,-107.426,-140.828,0,-126.379	1/1:101:0,100,0:0:0:100,0:3572,0:-305.913,-30.103,0,-305.913,-30.103,-305.913	1/2:30:0,19,11:0:0:19,11:684,349:-83.2232,-27.6001,-21.8806,-55.2059,0,-51.8945	1/2:40:0,18,22:0:0:18,22:636,762:-111.647,-59.9029,-54.4844,-50.3167,0,-43.694	1/2:87:0,38,48:0:0:38,48:1355,1660:-236.707,-126.586,-115.147,-102.045,0,-87.5952	1/1:147:0,145,1:0:0:145,1:5140,36:-458.325,-43.6494,0,-455.387,-43.7484,-455.086	1/2:74:0,32,42:0:0:32,42:1128,1431:-201.784,-110.23,-100.597,-86.0299,0,-73.3866	1/1:105:0,105,0:0:0:105,0:3694,0:-328.687,-31.6082,0,-328.687,-31.6082,-328.687	1/1:59:0,59,0:0:0:59,0:2060,0:-180.011,-17.7608,0,-180.011,-17.7608,-180.011	1/1:72:0,71,0:0:0:71,0:2491,0:-216.296,-21.3731,0,-216.296,-21.3731,-216.296	1/2:51:0,26,25:0:0:26,25:917,840:-136.371,-61.9571,-54.1303,-68.5373,0,-61.0116	1/2:134:0,56,77:0:0:56,77:1960,2560:-361.235,-201.944,-185.086,-154.524,0,-131.345	1/2:84:0,44,39:0:0:44,39:1563,1326:-227.478,-100.428,-87.183,-120.275,0,-108.535	1/1:75:0,74,0:0:0:74,0:2557,0:-225.277,-22.2762,0,-225.277,-22.2762,-225.277	1/2:336:0,170,165:0:0:170,165:5977,5357:-915.335,-429.495,-378.32,-483.379,0,-433.709	1/1:86:0,85,0:0:0:85,0:3001,0:-266.891,-25.5876,0,-266.891,-25.5876,-266.891	1/2:40:0,20,20:0:0:20,20:706,657:-107.727,-50.7539,-44.7333,-54.7577,0,-48.7371	1/2:136:0,50,84:0:0:50,84:1761,2889:-374.378,-231.541,-216.489,-140.177,0,-114.891	1/2:201:1,94,103:1:36:94,103:3337,3426:-542.836,-271.88,-246.45,-266.263,0,-238.124	1/2:83:0,34,49:0:0:34,49:1172,1689:-229.264,-137.489,-127.254,-92.1123,0,-77.3618	1/2:37:0,17,20:0:0:17,20:612,671:-97.3834,-47.6376,-42.5201,-43.3139,0,-37.2933	1/1:115:0,113,2:0:0:113,2:4019,67:-357.824,-34.0164,0,-352.402,-31.6514,-351.8	1/1:50:0,50,0:0:0:50,0:1752,0:-153.26,-15.0515,0,-153.26,-15.0515,-153.26	1/1:459:0,454,2:0:0:454,2:14900,71:-1270.3,-136.668,0,-1264.52,-130.941,-1263.92	1/1:138:0,136,0:0:0:136,0:4834,0:-425.784,-40.9401,0,-425.784,-40.9401,-425.784	1/2:35:0,21,14:0:0:21,14:712,486:-95.1282,-37.6047,-31.2831,-55.6859,0,-51.4715	1/2:259:0,165,94:0:0:165,94:5362,3192:-660.84,-258.14,-208.47,-402.493,0,-374.196	1/1:123:0,121,2:0:0:121,2:4291,70:-381.184,-36.4246,0,-375.492,-34.0163,-374.89	1/1:104:0,103,1:0:0:103,1:3649,30:-321.955,-31.0061,0,-319.558,-28.3082,-319.257	1/2:5:0,2,3:0:0:2,3:68,88:-11.5401,-6.22424,-5.62218,-5.04176,0,-4.13867	1/1:16:0,16,0:0:0:16,0:552,0:-48.993,-4.81648,0,-48.993,-4.81648,-48.993	1/1:9:0,9,0:0:0:9,0:309,0:-27.8664,-2.70927,0,-27.8664,-2.70927,-27.8664	1/1:12:0,11,0:0:0:11,0:382,0:-32.808,-3.31133,0,-32.808,-3.31133,-32.808	1/1:6:0,6,0:0:0:6,0:216,0:-18.2832,-1.80618,0,-18.2832,-1.80618,-18.2832	1/2:292:0,196,96:0:0:196,96:6462,3259:-756.486,-264.185,-205.183,-492.572,0,-463.673	1/1:111:0,111,0:0:0:111,0:3944,0:-348.575,-33.4143,0,-348.575,-33.4143,-348.575	1/1:53:0,53,0:0:0:53,0:1874,0:-165.062,-15.9546,0,-165.062,-15.9546,-165.062	1/2:3:0,1,2:0:0:1,2:36,72:-9.01656,-6.17126,-5.87023,-3.21998,0,-2.61792	1/2:140:0,71,64:0:0:71,64:2511,2172:-379.023,-174.862,-153.489,-203.165,0,-183.899	1/1:23:0,23,0:0:0:23,0:819,0:-71.3621,-6.92369,0,-71.3621,-6.92369,-71.3621	1/2:123:0,67,54:0:0:67,54:2345,1792:-329.076,-138.56,-118.391,-185.205,0,-168.949	1/2:74:0,35,39:0:0:35,39:1243,1342:-205.6,-104.571,-94.0348,-96.7666,0,-85.0264	1/1:55:0,53,1:0:0:53,1:1863,36:-165.729,-15.9546,0,-162.863,-14.9667,-162.562	1/1:197:0,196,0:0:0:196,0:6393,0:-542.118,-59.0019,0,-542.118,-59.0019,-542.118	1/2:83:0,31,51:0:0:31,51:1112,1777:-229.232,-138.652,-129.32,-85.0497,0,-69.6972	1/1:92:0,91,1:0:0:91,1:3268,36:-284.405,-27.3937,0,-281.471,-24.0991,-281.17	1/2:88:0,45,41:0:0:45,41:1594,1427:-242.639,-113.387,-99.8408,-126.792,0,-114.45	1/1:199:0,197,0:0:0:197,0:6949,0:-620.258,-59.3029,0,-620.258,-59.3029,-620.258	1/1:287:0,287,0:0:0:287,0:9531,0:-813.997,-86.3956,0,-813.997,-86.3956,-813.997	1/2:15:0,7,8:0:0:7,8:252,282:-43.2848,-22.77,-20.6628,-20.3905,0,-17.9822	1/2:87:0,32,53:0:0:32,53:1112,1770:-230.319,-140.079,-130.446,-87.5215,0,-71.5669	1/1:191:0,191,0:0:0:191,0:6589,0:-579.198,-57.4967,0,-579.198,-57.4967,-579.198	1/2:19:0,8,11:0:0:8,11:280,377:-53.3198,-30.5574,-28.1491,-22.7568,0,-19.4455	1/1:84:0,84,0:0:0:84,0:2949,0:-259.158,-25.2865,0,-259.158,-25.2865,-259.158	1/2:9:0,4,5:0:0:4,5:144,175:-22.6426,-11.2662,-10.0621,-8.9922,0,-7.48705	1/2:23:0,17,5:0:0:17,5:596,178:-61.9591,-14.5675,-9.44995,-47.4516,0,-45.9464	1/2:35:0,24,11:0:0:24,11:782,378:-91.1589,-30.9196,-23.6949,-60.5186,0,-57.2073	1/1:101:0,100,0:0:0:100,0:3543,0:-312.445,-30.103,0,-312.445,-30.103,-312.445	1/2:137:0,80,56:0:0:80,56:2839,1892:-376.399,-145.739,-121.657,-223.396,0,-206.538	1/2:10:0,5,4:0:0:5,4:176,141:-25.4332,-11.1536,-9.64843,-13.987,0,-12.7829	1/2:187:0,115,71:0:0:115,71:3875,2470:-500.188,-200.516,-165.897,-299.513,0,-278.14	1/2:190:0,108,80:0:0:108,80:3855,2749:-529.753,-216.827,-184.316,-306.944,0,-282.862	1/2:110:0,73,37:0:0:73,37:2592,1261:-309.278,-98.4549,-76.4797,-207.151,0,-196.013	1/2:64:0,31,33:0:0:31,33:1112,1152:-179.714,-89.4687,-80.1368,-86.3056,0,-76.3716	1/1:113:0,112,0:0:0:112,0:3981,0:-347.412,-33.7154,0,-347.412,-33.7154,-347.412	1/1:101:0,97,3:0:0:97,3:3453,108:-307.502,-29.1999,0,-298.7,-29.3129,-297.797	1/2:47:0,27,20:0:0:27,20:964,672:-129.255,-50.914,-42.7862,-74.9279,0,-68.9073	1/2:62:0,30,32:0:0:30,32:1068,1112:-172.263,-85.5004,-76.4695,-81.9721,0,-72.3391	1/2:130:0,75,55:0:0:75,55:2509,1819:-341.79,-147.225,-124.647,-194.775,0,-178.218	1/1:18:0,18,0:0:0:18,0:644,0:-56.8654,-5.41854,0,-56.8654,-5.41854,-56.8654	1/2:42:0,23,19:0:0:23,19:820,653:-112.131,-45.6082,-38.6845,-59.4043,0,-53.6847	1/1:93:0,93,0:0:0:93,0:3272,0:-288.055,-27.9958,0,-288.055,-27.9958,-288.055	1/1:170:0,170,0:0:0:170,0:6036,0:-532.139,-51.1751,0,-532.139,-51.1751,-532.139	1/1:104:0,104,0:0:0:104,0:3689,0:-322.201,-31.3071,0,-322.201,-31.3071,-322.201	1/2:133:0,80,53:0:0:80,53:2837,1806:-373.221,-142.285,-118.202,-227.005,0,-211.051	1/1:157:0,152,4:0:0:152,4:5401,144:-484.743,-45.7566,0,-472.998,-37.3817,-471.794	1/2:27:0,16,10:0:0:16,10:553,344:-72.3773,-27.5967,-22.7802,-44.4533,0,-41.443	1/1:101:0,101,0:0:0:101,0:3588,0:-316.211,-30.404,0,-316.211,-30.404,-316.211	1/2:128:0,51,76:0:0:51,76:1802,2623:-354.464,-208.201,-192.849,-141.622,0,-118.744	1/1:138:0,138,0:0:0:138,0:4944,0:-429.434,-41.5421,0,-429.434,-41.5421,-429.434	1/2:88:0,36,52:0:0:36,52:1254,1758:-240.328,-138.473,-127.636,-98.034,0,-82.3805	1/2:72:0,39,31:0:0:39,31:1365,1073:-194.889,-84.0175,-72.2774,-108.007,0,-98.6755	1/1:93:0,93,0:0:0:93,0:3269,0:-289.873,-27.9958,0,-289.873,-27.9958,-289.873	1/2:115:0,57,57:0:0:57,57:2020,1935:-311.687,-147.464,-130.306,-155.243,0,-138.084	1/2:34:0,16,17:0:0:16,17:568,564:-90.3591,-44.2222,-39.4057,-44.8468,0,-39.7293	1/1:71:0,71,0:0:0:71,0:2491,0:-219.568,-21.3731,0,-219.568,-21.3731,-219.568	1/2:70:0,28,41:0:0:28,41:982,1428:-189.974,-110.165,-101.736,-74.1807,0,-61.8385	1/1:65:0,65,0:0:0:65,0:2296,0:-200.456,-19.567,0,-200.456,-19.567,-200.456	1/2:78:0,44,34:0:0:44,34:1542,1153:-210.072,-85.0639,-71.8186,-116.824,0,-106.589	1/2:61:0,18,43:0:0:18,43:640,1441:-162.364,-110.387,-104.968,-46.1787,0,-33.2344	1/1:35:0,34,0:0:0:34,0:1205,0:-102.808,-10.235,0,-102.808,-10.235,-102.808	1/1:91:2,87,1:2:72:87,1:3041,35:-264.744,-21.932,0,-262.499,-23.8846,-268.071
chr05	26930559	.	C	T	104610	PASS	AB=0.500143;ABP=3.01092;AC=136;AF=0.723404;AN=188;AO=5011;CIGAR=1X;DP=6772;DPB=6772;DPRA=14.5527;EPP=10884.3;EPPR=3820.46;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.8619;MQMR=58.7474;NS=94;NUMALT=1;ODDS=0.432968;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178980;QR=62528;RO=1758;RPL=5011;RPP=10884.3;RPPR=3820.46;RPR=0;RUN=1;SAF=5011;SAP=10884.3;SAR=0;SRF=1758;SRP=3820.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:10,16:10:360:16:576:-44.3467,0,-24.9175	1/1:143:0,143:0:0:143:5116:-460.524,-43.0473,0	0/1:110:47,63:47:1676:63:2252:-169.794,0,-117.924	1/1:108:0,108:0:0:108:3884:-349.75,-32.5112,0	0/1:36:15,21:15:536:21:743:-56.3563,0,-37.7377	0/1:32:25,7:25:896:7:252:-13.396,0,-71.327	0/1:139:59,80:59:2120:80:2867:-216.423,0,-149.217	1/1:137:2,135:2:72:135:4843:-429.129,-34.4044,0	0/1:45:22,23:22:769:23:801:-58.824,0,-55.9799	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:48:0,48:0:0:48:1710:-154.184,-14.4494,0	1/1:55:0,55:0:0:55:1933:-174.243,-16.5567,0	0/1:53:32,21:32:1139:21:748:-51.6907,0,-86.807	0/1:61:26,35:26:918:35:1256:-94.9825,0,-64.5112	0/1:36:15,21:15:540:21:743:-56.3563,0,-38.0995	1/1:45:0,45:0:0:45:1619:-146,-13.5464,0	0/1:54:27,27:27:964:27:968:-71.1817,0,-70.8212	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:40:23,17:23:824:17:612:-43.3722,0,-62.4421	0/1:96:39,57:39:1372:57:2035:-154.494,0,-94.8769	0/1:117:66,51:66:2339:51:1823:-129,0,-175.099	0/1:108:70,38:70:2495:38:1364:-90.5128,0,-191.883	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:73:7,66:7:248:66:2365:-190.633,0,-0.666292	1/1:58:0,58:0:0:58:2057:-185.401,-17.4597,0	1/1:237:0,237:0:0:237:8503:-765.253,-71.3441,0	1/1:147:0,147:0:0:147:5240:-471.632,-44.2514,0	0/1:37:19,18:19:675:18:636:-46.4286,0,-49.8938	0/1:170:74,95:74:2635:95:3406:-255.61,0,-186.062	1/1:89:0,88:0:0:88:3160:-284.412,-26.4906,0	1/1:88:0,88:0:0:88:3139:-281.632,-26.4906,0	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4493	1/1:12:0,12:0:0:12:423:-38.4035,-3.61236,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:171:88,83:88:3084:83:2980:-216.92,0,-226.122	1/1:168:0,168:0:0:168:6014:-541.359,-50.573,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:100:40,60:40:1424:60:2148:-162.103,0,-98.3483	1/1:36:0,36:0:0:36:1240:-111.895,-10.8371,0	0/1:72:43,29:43:1535:29:1044:-72.6006,0,-116.727	0/1:57:40,17:40:1417:17:603:-37.4408,0,-110.65	1/1:42:0,42:0:0:42:1494:-134.753,-12.6433,0	1/1:46:0,46:0:0:46:1648:-148.606,-13.8474,0	0/1:90:39,51:39:1400:51:1816:-136.628,0,-99.2065	1/1:143:0,143:0:0:143:5123:-460.984,-43.0473,0	0/1:101:50,51:50:1782:51:1800:-131.875,0,-130.24	1/1:117:0,117:0:0:117:4200:-378.172,-35.2205,0	1/1:146:0,146:0:0:146:5229:-470.61,-43.9504,0	0/1:11:2,9:2:72:9:324:-24.8172,0,-3.52539	0/1:117:54,63:54:1913:63:2264:-168.802,0,-137.121	1/1:41:0,41:0:0:41:1472:-132.774,-12.3422,0	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	1/1:74:1,73:1:36:73:2608:-231.393,-18.7028,0	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.8958	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7236	1/1:62:1,61:1:36:61:2180:-192.809,-15.0656,0	0/1:99:59,40:59:2112:40:1418:-98.1139,0,-160.519	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:121:71,50:71:2544:50:1787:-124.683,0,-192.547	0/1:165:81,84:81:2896:84:2996:-220.201,0,-210.851	0/1:37:14,23:14:474:23:828:-63.706,0,-31.8416	0/1:33:18,15:18:633:15:540:-39.0025,0,-47.3611	1/1:91:0,91:0:0:91:3240:-291.82,-27.3937,0	1/1:94:1,93:1:36:93:3329:-296.229,-24.6985,0	0/1:27:15,12:15:527:12:413:-29.37,0,-39.5378	0/1:74:40,34:40:1436:34:1200:-86.0256,0,-107.034	0/1:85:51,34:51:1793:34:1215:-84.0659,0,-135.875	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:139:78,61:78:2791:61:2171:-153.811,0,-209.533	1/1:68:0,68:0:0:68:2400:-216.255,-20.47,0	1/1:86:1,85:1:36:85:3049:-271.039,-22.2903,0	1/1:98:0,98:0:0:98:3516:-316.648,-29.5009,0	0/1:78:32,46:32:1139:46:1639:-124.318,0,-79.3204	1/1:94:0,94:0:0:94:3384:-304.774,-28.2968,0	0/1:10:8,2:8:275:2:72:-3.82642,0,-22.037	1/1:88:1,87:1:36:87:3107:-276.243,-22.8924,0	0/1:89:33,55:33:1167:55:1972:-151.054,0,-78.6341	1/1:120:0,120:0:0:120:4261:-383.299,-36.1236,0	0/1:105:63,42:63:2243:42:1484:-102.244,0,-170.525	0/1:41:17,24:17:603:24:842:-63.7548,0,-42.2573	1/1:53:0,53:0:0:53:1868:-168.397,-15.9546,0	0/1:116:62,54:62:2193:54:1906:-136.808,0,-162.707	0/1:45:21,24:21:752:24:849:-63.1781,0,-54.4064	1/1:60:0,60:0:0:60:2124:-191.426,-18.0618,0	0/1:65:35,30:35:1252:30:1076:-77.5859,0,-93.3708	1/1:52:0,52:0:0:52:1852:-166.959,-15.6536,0	0/1:84:40,44:40:1413:44:1557:-115.133,0,-102.067	0/1:53:37,16:37:1320:16:568:-35.4973,0,-103.139	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0
chr05	26930698	.	C	T	22140.8	PASS	AB=0.4663;ABP=31.6964;AC=49;AF=0.263441;AN=186;AO=1365;CIGAR=1X;DP=5764;DPB=5764;DPRA=0.962912;EPP=2958.39;EPPR=9546.63;GTI=1;LEN=1;MEANALT=1.03636;MQM=59.6886;MQMR=59.9752;NS=93;NUMALT=1;ODDS=0.379947;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48847;QR=156118;RO=4395;RPL=1;RPP=2958.39;RPPR=9546.63;RPR=1364;RUN=1;SAF=0;SAP=2967.07;SAR=1365;SRF=0;SRP=9546.63;SRR=4395;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:16,12:16:572:12:432:-30.7677,0,-43.3846	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.384	0/1:90:59,31:59:2099:31:1112:-73.2823,0,-162.086	0/0:140:140,0:140:5010:0:0:0,-42.1442,-451.046	0/1:48:33,15:33:1175:15:536:-34.1254,0,-91.6075	0/1:19:14,5:14:500:5:176:-10.4654,0,-39.6166	0/1:93:48,45:48:1699:45:1616:-117.732,0,-124.929	0/0:79:79,0:79:2804:0:0:0,-23.7814,-252.468	0/1:70:40,30:40:1432:30:1067:-75.2446,0,-108.105	0/0:92:92,0:92:3283:0:0:0,-27.6948,-295.69	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:49:49,0:49:1713:0:0:0,-14.7505,-154.453	0/1:61:34,27:34:1196:27:968:-69.0745,0,-89.5798	0/1:50:25,25:25:876:25:900:-66.2649,0,-64.1028	0/1:41:27,14:27:946:14:504:-33.3555,0,-73.1106	0/0:30:30,0:30:1055:0:0:0,-9.0309,-95.26	0/1:46:17,29:17:612:29:1020:-78.2541,0,-41.5661	0/0:33:33,0:33:1152:0:0:0,-9.93399,-103.983	0/1:68:40,28:40:1414:28:1000:-69.8453,0,-107.086	0/1:61:33,28:33:1184:28:1004:-72.313,0,-88.5055	0/1:110:75,35:75:2679:35:1256:-80.2012,0,-208.241	0/1:90:40,50:40:1436:50:1779:-133.242,0,-102.445	0/1:72:42,30:42:1489:30:1076:-75.474,0,-112.628	0/0:64:60,3:60:2133:3:108:0,-9.24955,-182.157	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.264	0/0:232:232,0:232:8279:0:0:0,-69.839,-745.12	0/0:130:130,0:130:4602:0:0:0,-39.1339,-414.327	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	0/1:167:77,90:77:2760:90:3216:-239.383,0,-198.37	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/0:78:77,1:77:2726:1:25:0,-21.0068,-243.108	.:.:.:.:.:.:.:.	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:141:76,65:76:2687:65:2340:-168.411,0,-199.628	0/0:104:103,0:103:3654:0:0:0,-31.0061,-328.706	0/0:38:38,0:38:1325:0:0:0,-11.4391,-119.545	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:62:32,30:32:1152:30:1076:-78.4844,0,-85.3263	0/0:33:33,0:33:1147:0:0:0,-9.93399,-103.532	0/1:70:29,41:29:1044:41:1472:-111.704,0,-73.2027	0/1:32:15,17:15:536:17:604:-45.0529,0,-38.9419	0/0:50:50,0:50:1766:0:0:0,-15.0515,-159.222	0/0:74:74,0:74:2624:0:0:0,-22.2762,-236.406	0/1:57:28,29:28:1000:29:1044:-76.912,0,-73.1567	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:89:50,39:50:1784:39:1404:-99.8629,0,-134.051	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.225	0/0:126:125,0:125:4451:0:0:0,-37.6287,-400.399	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:112:59,53:59:2120:53:1891:-136.736,0,-157.353	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/1:16:9,7:9:316:7:252:-18.1986,0,-23.9624	0/0:88:88,0:88:3131:0:0:0,-26.4906,-282.016	0/1:37:19,18:19:654:18:644:-47.1501,0,-48.042	0/1:15:9,6:9:320:6:216:-15.2732,0,-24.6269	0/1:19:13,6:13:460:6:216:-14.0709,0,-36.0158	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/1:75:37,38:37:1308:38:1360:-100.114,0,-95.4443	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:129:80,49:80:2868:49:1741:-118.138,0,-219.524	0/1:101:55,46:55:1949:46:1648:-118.2,0,-145.28	0/1:47:27,20:27:956:20:720:-50.9757,0,-72.2073	0/1:44:29,15:29:1024:15:540:-35.6912,0,-79.2273	0/0:113:111,2:111:3971:2:72:0,-27.1797,-350.744	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:8:6,2:6:203:2:72:-4.42848,0,-16.1929	0/1:57:27,30:27:955:30:1061:-78.4742,0,-69.1061	0/1:48:26,22:26:927:22:784:-56.4345,0,-69.2979	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5535	0/1:78:43,35:43:1531:35:1256:-89.8568,0,-114.602	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/0:116:116,0:116:4139:0:0:0,-34.9195,-372.694	0/0:104:104,0:104:3674:0:0:0,-31.3071,-330.864	0/1:61:37,24:37:1294:24:852:-58.6357,0,-98.3958	0/0:70:69,1:69:2442:1:36:0,-17.4738,-216.437	0/1:17:3,14:3:108:14:504:-40.5806,0,-4.95766	0/0:73:72,1:72:2553:1:36:0,-18.3769,-226.421	0/1:39:23,16:23:807:16:572:-40.0733,0,-61.209	0/0:120:120,0:120:4283:0:0:0,-36.1236,-385.648	0/1:69:34,35:34:1220:35:1256:-92.5719,0,-89.3357	0/1:42:21,21:21:748:21:756:-55.724,0,-55.002	0/0:45:45,0:45:1595:0:0:0,-13.5463,-143.84	0/1:104:43,61:43:1512:61:2175:-164.702,0,-105.066	0/1:33:16,17:16:563:17:612:-45.4353,0,-41.0652	0/0:62:62,0:62:2167:0:0:0,-18.6639,-195.295	0/1:35:19,15:19:684:15:540:-38.4259,0,-51.3808	0/0:50:49,1:49:1739:1:36:0,-11.4532,-153.195	0/1:67:36,31:36:1245:31:1108:-79.8528,0,-92.1807	0/1:51:12,39:12:432:39:1400:-110.942,0,-23.8687	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:64:64,0:64:2228:0:0:0,-19.2659,-200.781
chr05	26932172	.	CGCC	TGCT,CGCT	164247	PASS	AB=0.508036,0.486941;ABP=5.24394,8.9085;AC=132,54;AF=0.709677,0.290323;AN=186;AO=6045,1950;CIGAR=1X2M1X,3M1X;DP=8034;DPB=8034;DPRA=89.2333,0.889155;EPP=13068.8,4211.36;EPPR=5.18177;GTI=4;LEN=4,1;MEANALT=1.94444,2.29091;MQM=47.2286,59.5005;MQMR=60;NS=93;NUMALT=2;ODDS=0.136047;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=208748,69399;QR=30;RO=1;RPL=6045,1949;RPP=13129.6,4228.7;RPPR=5.18177;RPR=0,1;RUN=1,1;SAF=6038,1948;SAP=13068.8,4220.03;SAR=7,2;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,25,7:0:0:25,7:834,252:-87.9865,-20.9217,-13.396,-67.4184,0,-65.3112	1/1:120:0,120,0:0:0:120,0:4123,0:-368.604,-36.1236,0,-368.604,-36.1236,-368.604	1/2:94:0,47,47:0:0:47,47:1620,1656:-266.07,-135.159,-121.01,-131.258,0,-117.11	1/1:172:0,171,0:0:0:171,0:5902,0:-524.948,-51.4761,0,-524.948,-51.4761,-524.948	1/2:42:0,26,16:0:0:26,16:923,576:-120.963,-47.3539,-39.5271,-73.9643,0,-69.1478	1/2:49:0,21,28:0:0:21,28:729,996:-140.343,-81.5013,-75.1797,-59.1907,0,-50.7619	1/2:74:0,34,40:0:0:34,40:1172,1428:-211.061,-116.77,-106.535,-94.6398,0,-82.5986	1/1:143:0,143,0:0:0:143,0:4927,0:-440.728,-43.0473,0,-440.728,-43.0473,-440.728	1/2:65:0,37,28:0:0:37,28:1291,1000:-185.71,-81.8618,-70.7237,-104.2,0,-95.7711	1/1:48:0,48,0:0:0:48,0:1680,0:-150.101,-14.4494,0,-150.101,-14.4494,-150.101	1/1:58:0,57,0:0:0:57,0:2005,0:-178.729,-17.1587,0,-178.729,-17.1587,-178.729	1/1:60:0,60,0:0:0:60,0:2059,0:-183.289,-18.0618,0,-183.289,-18.0618,-183.289	1/2:78:0,40,38:0:0:40,38:1341,1356:-218.682,-110.901,-98.8601,-108.126,0,-96.6869	1/2:54:0,32,22:0:0:32,22:1120,777:-154.045,-63.6277,-53.9947,-90.7676,0,-84.1449	1/2:59:0,29,28:0:0:29,28:1007,985:-160.914,-80.1483,-71.4185,-80.7742,0,-72.3454	1/1:63:0,62,0:0:0:62,0:2135,0:-189.658,-18.6639,0,-189.658,-18.6639,-189.658	1/2:63:0,31,32:0:0:31,32:1058,1131:-177.846,-92.4648,-83.1329,-85.7272,0,-76.0943	1/1:65:0,65,0:0:0:65,0:2225,0:-199.669,-19.567,0,-199.669,-19.567,-199.669	1/2:26:0,13,11:0:0:13,11:446,392:-68.0041,-31.9793,-28.0659,-36.0444,0,-32.733	1/2:271:0,128,142:0:0:128,142:4508,5092:-778.232,-415.158,-376.626,-363.108,0,-320.361	1/2:192:0,92,99:0:0:92,99:3181,3532:-544.393,-288.023,-260.328,-256.483,0,-226.681	1/2:96:0,31,65:0:0:31,65:1070,2304:-274.089,-187.971,-178.639,-86.4648,0,-66.8979	1/2:57:0,31,26:0:0:31,26:1068,913:-160.558,-74.6572,-65.3253,-86.2475,0,-78.4207	1/1:115:0,113,2:0:0:113,2:3882,72:-346.068,-34.0164,0,-340.193,-27.7817,-339.591	1/1:53:0,53,0:0:0:53,0:1845,0:-165.35,-15.9546,0,-165.35,-15.9546,-165.35	1/1:271:0,271,0:0:0:271,0:9434,0:-839.869,-81.5791,0,-839.869,-81.5791,-839.869	1/1:134:0,134,0:0:0:134,0:4586,0:-408.254,-40.338,0,-408.254,-40.338,-408.254	1/2:24:0,9,15:0:0:9,15:310,540:-69.4153,-44.3986,-41.6893,-25.3656,0,-20.8501	1/2:134:0,71,63:0:0:71,63:2434,2240:-377.42,-182.746,-161.373,-195.021,0,-176.057	1/1:184:0,180,3:0:0:180,3:6297,108:-560.31,-54.1854,0,-551.519,-45.3423,-550.616	1/1:110:0,108,0:0:0:108,0:3692,0:-329.495,-32.5112,0,-329.495,-32.5112,-329.495	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:8:0,8,0:0:0:8,0:276,0:-25.0182,-2.40824,0,-25.0182,-2.40824,-25.0182	1/1:4:0,4,0:0:0:4,0:144,0:-13.2414,-1.20412,0,-13.2414,-1.20412,-13.2414	.:.:.:.:.:.:.:.	1/1:2:0,2,0:0:0:2,0:72,0:-6.79966,-0.60206,0,-6.79966,-0.60206,-6.79966	1/2:197:0,97,99:0:0:97,99:3352,3501:-554.509,-285.068,-255.868,-269.537,0,-239.735	1/1:253:0,251,0:0:0:251,0:8692,0:-774.677,-75.5585,0,-774.677,-75.5585,-774.677	1/1:58:0,58,0:0:0:58,0:1981,0:-177.768,-17.4597,0,-177.768,-17.4597,-177.768	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:163:0,88,75:0:0:88,75:3061,2683:-465.295,-219.065,-192.575,-246.581,0,-224.004	1/1:34:0,34,0:0:0:34,0:1168,0:-104.86,-10.235,0,-104.86,-10.235,-104.86	1/2:113:0,56,57:0:0:56,57:1902,2015:-317.664,-164.461,-147.603,-153.549,0,-136.391	1/2:83:0,43,39:0:0:43,39:1503,1384:-232.852,-112.799,-99.855,-120.111,0,-108.37	1/1:63:0,63,0:0:0:63,0:2145,0:-191.968,-18.9649,0,-191.968,-18.9649,-191.968	1/1:61:0,61,0:0:0:61,0:2108,0:-187.752,-18.3628,0,-187.752,-18.3628,-187.752	1/2:140:0,79,60:0:0:79,60:2709,2152:-392.841,-175.399,-151.618,-217.471,0,-199.409	1/1:116:0,113,1:0:0:113,1:3917,36:-347.678,-34.0164,0,-344.741,-31.0721,-344.439	1/2:45:0,26,19:0:0:26,19:900,680:-127.827,-55.7778,-47.951,-72.3996,0,-66.68	1/1:155:0,155,0:0:0:155,0:5371,0:-478.95,-46.6597,0,-478.95,-46.6597,-478.95	1/1:117:0,117,0:0:0:117,0:3970,0:-353.098,-35.2205,0,-353.098,-35.2205,-353.098	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:94:0,49,45:0:0:49,45:1677,1601:-265.536,-130.779,-116.028,-135.105,0,-121.559	1/1:37:0,37,0:0:0:37,0:1270,0:-113.403,-11.1381,0,-113.403,-11.1381,-113.403	1/2:10:0,4,6:0:0:4,6:144,216:-29.663,-17.9843,-16.7802,-12.0373,0,-10.2311	1/1:107:0,107,0:0:0:107,0:3699,0:-330.721,-32.2102,0,-330.721,-32.2102,-330.721	1/2:35:0,10,24:0:0:10,24:355,840:-96.651,-68.3281,-65.3178,-28.3157,0,-21.0909	1/2:4:0,2,2:0:0:2,2:70,72:-1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chr05	26937669	.	T	C	38809.3	PASS	AB=0.477439;ABP=24.7621;AC=50;AF=0.265957;AN=188;AO=2373;CIGAR=1X;DP=9490;DPB=9490;DPRA=1.01144;EPP=5155.91;EPPR=15450.9;GTI=1;LEN=1;MEANALT=1.03448;MQM=59.9933;MQMR=59.999;NS=94;NUMALT=1;ODDS=2.33136;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84682;QR=253529;RO=7114;RPL=2373;RPP=5155.91;RPPR=15450.9;RPR=0;RUN=1;SAF=0;SAP=5155.91;SAR=2373;SRF=0;SRP=15450.9;SRR=7114;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:42,18:42:1504:18:648:-40.5901,0,-117.593	0/0:160:160,0:160:5725:0:0:0,-48.1648,-515.365	0/1:181:79,102:79:2806:102:3641:-273.407,0,-198.291	0/0:161:159,2:159:5697:2:72:0,-41.6291,-506.009	0/1:78:40,38:40:1432:38:1368:-99.9405,0,-105.697	0/1:67:38,29:38:1364:29:1044:-74.1058,0,-102.892	0/1:159:78,81:78:2804:81:2900:-213.372,0,-204.735	0/0:173:171,2:171:6108:2:68:0,-45.6205,-543.361	0/1:76:47,29:47:1669:29:1036:-70.6756,0,-127.617	0/0:122:122,0:122:4304:0:0:0,-36.7257,-387.536	0/0:72:72,0:72:2534:0:0:0,-21.6742,-228.31	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.383	0/1:72:48,24:48:1709:24:849:-55.0537,0,-132.419	0/1:86:38,48:38:1341:48:1720:-129.197,0,-95.0995	0/1:74:43,31:43:1544:31:1101:-77.1221,0,-116.977	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.149	0/1:85:37,48:37:1309:48:1724:-129.858,0,-92.522	0/0:85:85,0:85:3033:0:0:0,-25.5875,-273.199	0/1:63:26,37:26:928:37:1320:-100.137,0,-64.8734	0/1:207:117,90:117:4192:90:3213:-227.078,0,-315.148	0/1:195:97,98:97:3453:98:3500:-256.511,0,-252.281	0/1:49:12,37:12:432:37:1328:-105.072,0,-24.4707	0/1:40:29,11:29:1025:11:396:-23.9415,0,-80.5195	0/0:113:109,4:109:3897:4:144:0,-20.7028,-337.609	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/0:268:268,0:268:9565:0:0:0,-80.676,-860.808	0/0:271:271,0:271:9638:0:0:0,-81.5791,-867.37	0/1:47:29,18:29:1044:18:629:-42.7854,0,-80.1264	0/1:283:129,154:129:4598:154:5463:-406.605,0,-328.791	0/0:104:95,8:95:3378:8:284:0,-5.42654,-278.334	0/0:90:90,0:90:3194:0:0:0,-27.0927,-287.682	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:204:109,95:109:3845:95:3386:-243.543,0,-284.832	0/0:73:73,0:73:2582:0:0:0,-21.9752,-232.627	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:180:107,73:107:3795:73:2620:-181.862,0,-287.56	0/0:48:48,0:48:1694:0:0:0,-14.4494,-152.742	0/1:159:71,88:71:2521:88:3107:-231.991,0,-179.277	0/1:71:38,33:38:1353:33:1165:-83.7819,0,-100.695	0/0:72:71,1:71:2503:1:36:0,-18.0759,-221.92	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/1:105:66,39:66:2360:39:1400:-94.691,0,-181.051	0/0:160:160,0:160:5663:0:0:0,-48.1648,-509.792	0/1:106:68,38:68:2440:38:1356:-90.4313,0,-187.946	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/0:248:248,0:248:8892:0:0:0,-74.6554,-800.262	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:256:142,114:142:5026:114:4081:-290.411,0,-375.423	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:20:5,15:5:165:15:536:-42.5542,0,-9.153	0/0:99:99,0:99:3533:0:0:0,-29.802,-318.178	0/1:32:12,20:12:428:20:720:-55.4958,0,-29.2258	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/1:20:11,9:11:392:9:324:-23.4853,0,-29.5995	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/1:124:71,53:71:2533:53:1896:-133.59,0,-190.892	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:111:51,60:51:1816:60:2160:-161.252,0,-130.307	0/1:208:113,95:113:4041:95:3389:-242.61,0,-301.262	0/1:65:31,34:31:1093:34:1209:-89.5472,0,-79.1107	0/1:108:45,63:45:1608:63:2256:-170.792,0,-112.499	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:112:108,4:108:3811:4:144:0,-20.4017,-329.873	0/1:55:24,31:24:849:31:1116:-84.195,0,-60.1712	0/1:92:44,48:44:1569:48:1692:-124.868,0,-113.805	0/1:94:53,41:53:1900:41:1468:-104.119,0,-142.981	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:112:49,63:49:1737:63:2264:-170.307,0,-122.897	0/0:85:85,0:85:3029:0:0:0,-25.5875,-272.839	0/0:151:150,0:150:5346:0:0:0,-45.1545,-480.912	0/0:189:189,0:189:6739:0:0:0,-56.8947,-606.582	0/1:138:79,59:79:2828:59:2089:-146.736,0,-213.217	0/0:136:136,0:136:4839:0:0:0,-40.9401,-435.662	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:136:136,0:136:4869:0:0:0,-40.9401,-438.361	0/1:148:75,73:75:2666:73:2590:-188.794,0,-195.63	0/0:236:236,0:236:8464:0:0:0,-71.0431,-761.757	0/1:104:54,50:54:1921:50:1800:-130.975,0,-141.858	0/1:85:53,31:53:1908:31:1112:-74.745,0,-146.351	0/0:96:96,0:96:3406:0:0:0,-28.8989,-306.753	0/1:171:104,67:104:3713:67:2381:-163.07,0,-282.894	0/1:44:28,16:28:1004:16:576:-38.9297,0,-77.4305	0/0:78:77,1:77:2729:1:36:0,-19.8821,-242.254	0/1:71:34,37:34:1216:37:1296:-95.5657,0,-88.3734	0/0:74:74,0:74:2615:0:0:0,-22.2762,-235.594	0/1:117:65,52:65:2279:52:1856:-132.099,0,-170.147	0/1:57:21,36:21:748:36:1292:-99.4251,0,-50.4866	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.66	0/0:148:146,2:146:5228:2:57:0,-39.1391,-465.244
chr05	26937718	.	C	T	191145	PASS	AB=0.494843;ABP=4.0853;AC=138;AF=0.734043;AN=188;AO=7112;CIGAR=1X;DP=9479;DPB=9479;DPRA=0;EPP=15446.5;EPPR=5114.69;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.6444;MQMR=59.8204;NS=94;NUMALT=1;ODDS=9.84827;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=254083;QR=84277;RO=2366;RPL=4178;RPP=475.512;RPPR=264.721;RPR=2934;RUN=1;SAF=4178;SAP=475.512;SAR=2934;SRF=1453;SRP=270.636;SRR=913;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:11,16:11:396:16:563:-42.8714,0,-27.8549	1/1:124:0,124:0:0:124:4444:-399.557,-37.3277,0	0/1:229:110,119:110:3911:119:4264:-314.585,0,-283.145	1/1:253:0,253:0:0:253:9017:-811.481,-76.1606,0	0/1:49:27,22:27:960:22:788:-56.4943,0,-71.9484	0/1:48:28,20:28:1000:20:720:-50.6793,0,-75.8659	0/1:143:70,73:70:2472:73:2603:-191.153,0,-179.685	1/1:166:0,166:0:0:166:5928:-532.94,-49.971,0	0/1:118:62,56:62:2194:56:2012:-145.733,0,-162.141	1/1:125:0,125:0:0:125:4458:-401.191,-37.6288,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:78:0,78:0:0:78:2788:-250.95,-23.4803,0	0/1:75:42,33:42:1496:33:1167:-82.7415,0,-112.349	0/1:95:57,38:57:2031:38:1360:-94.1027,0,-154.464	0/1:55:34,21:34:1215:21:747:-50.9977,0,-93.0968	1/1:58:0,58:0:0:58:2076:-187.087,-17.4597,0	0/1:104:54,50:54:1940:50:1784:-129.532,0,-143.463	1/1:63:0,63:0:0:63:2264:-203.815,-18.9649,0	0/1:40:16,24:16:568:24:864:-66.0352,0,-39.4107	0/1:211:112,99:112:4024:99:3521:-253.514,0,-298.825	0/1:150:79,71:79:2803:71:2531:-182.831,0,-207.341	0/1:63:17,46:17:608:46:1652:-130.004,0,-36.0871	0/1:59:25,34:25:892:34:1220:-92.2727,0,-62.8389	1/1:67:1,66:1:36:66:2364:-209.42,-16.5707,0	1/1:70:0,70:0:0:70:2489:-223.185,-21.0721,0	1/1:282:1,281:1:36:281:10042:-899.801,-81.2922,0	1/1:289:0,288:0:0:288:10283:-924.768,-86.6966,0	0/1:28:16,12:16:572:12:432:-30.7924,0,-43.38	0/1:286:128,158:128:4568:158:5655:-422.89,0,-325.188	1/1:135:3,132:3:108:132:4709:-413.743,-30.5639,0	1/1:94:0,94:0:0:94:3335:-300.31,-28.2968,0	0/1:10:4,6:4:136:6:212:-16.4145,0,-9.56524	1/1:26:0,26:0:0:26:932:-84.1764,-7.82678,0	1/1:11:0,11:0:0:11:392:-35.6023,-3.31133,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:134:82,52:82:2944:52:1849:-126.321,0,-224.854	1/1:138:0,138:0:0:138:4929:-443.71,-41.5421,0	1/1:65:1,64:1:36:64:2279:-201.31,-15.9687,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:188:106,82:106:3756:82:2940:-207.913,0,-281.633	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	0/1:155:48,107:48:1712:107:3823:-297.244,0,-107.701	0/1:57:36,21:36:1292:21:756:-51.18,0,-99.4251	1/1:71:0,71:0:0:71:2525:-227.5,-21.3731,0	1/1:105:0,105:0:0:105:3751:-337.509,-31.6082,0	0/1:123:48,75:48:1699:75:2684:-204.761,0,-116.152	1/1:189:0,189:0:0:189:6780:-610.075,-56.8947,0	0/1:114:64,50:64:2254:50:1788:-126.827,0,-168.171	1/1:196:0,196:0:0:196:7014:-631.323,-59.0019,0	1/1:168:1,167:1:36:167:6000:-536.474,-46.9748,0	0/1:12:5,7:5:176:7:248:-19.0518,0,-12.5727	0/1:143:64,79:64:2296:79:2817:-210.695,0,-163.851	1/1:83:0,83:0:0:83:2964:-266.991,-24.9855,0	0/1:14:6,8:6:212:8:284:-21.6889,0,-15.2104	1/1:122:0,122:0:0:122:4372:-393.586,-36.7257,0	0/1:33:18,15:18:640:15:540:-39.0021,0,-47.9953	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:33:10,23:10:351:23:826:-64.7298,0,-21.9927	1/1:128:0,128:0:0:128:4580:-412.332,-38.5318,0	0/1:85:52,33:52:1837:33:1184:-81.2808,0,-139.848	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:175:139,36:139:4938:36:1273:-62.1623,0,-391.893	0/1:209:90,119:90:3224:119:4232:-318.087,0,-227.453	0/1:151:67,84:67:2391:84:3005:-225.184,0,-169.991	0/1:103:45,58:45:1584:58:2061:-154.668,0,-111.842	1/1:150:1,149:1:36:149:5307:-474.034,-41.5562,0	1/1:144:1,143:1:36:143:5088:-454.437,-39.75,0	0/1:42:26,16:26:923:16:563:-38.3559,0,-70.7435	0/1:78:38,40:38:1364:40:1440:-106.399,0,-99.5689	0/1:101:59,42:59:2093:42:1497:-104.591,0,-158.148	1/1:28:0,28:0:0:28:1004:-90.647,-8.42884,0	0/1:95:52,43:52:1856:43:1528:-109.191,0,-138.71	1/1:110:0,110:0:0:110:3921:-352.991,-33.1133,0	1/1:162:0,162:0:0:162:5794:-521.544,-48.7669,0	1/1:221:0,221:0:0:221:7915:-710.315,-66.5276,0	0/1:90:34,56:34:1199:56:2000:-153.163,0,-81.1139	1/1:155:3,152:3:108:152:5428:-478.564,-36.5845,0	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	1/1:136:1,135:1:36:135:4829:-431.148,-37.3418,0	0/1:148:51,97:51:1828:97:3436:-264.875,0,-120.237	1/1:212:1,211:1:36:211:7552:-675.504,-60.2201,0	0/1:81:45,36:45:1608:36:1288:-91.8402,0,-120.627	0/1:66:34,32:34:1203:32:1139:-82.9422,0,-88.7071	1/1:68:1,67:1:36:67:2394:-212.046,-16.8718,0	0/1:143:78,65:78:2785:65:2313:-165.382,0,-207.826	0/1:16:11,5:11:392:5:180:-11.7176,0,-30.8036	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	0/1:73:30,43:30:1076:43:1540:-116.918,0,-75.1777	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:118:63,55:63:2251:55:1960:-141.132,0,-167.318	0/1:55:44,11:44:1567:11:392:-19.0634,0,-124.762	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:87:0,87:0:0:87:3111:-280.16,-26.1896,0
chr05	26949515	.	C	A	44951.9	PASS	AB=0.503082;ABP=3.46538;AC=51;AF=0.271277;AN=188;AO=2794;CIGAR=1X;DP=10831;DPB=10831;DPRA=1.00276;EPP=5983.56;EPPR=17191.2;GTI=1;LEN=1;MEANALT=1.01724;MQM=44.262;MQMR=58.3864;NS=94;NUMALT=1;ODDS=5.51361;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98999;QR=287165;RO=8035;RPL=10;RPP=5983.56;RPPR=17191.2;RPR=2784;RUN=1;SAF=2794;SAP=6070.1;SAR=0;SRF=8035;SRP=17450.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:101:50,51:50:1783:51:1777:-127.165,0,-130.248	0/0:100:100,0:100:3570:0:0:0,-30.103,-320.764	0/1:265:110,155:110:3944:155:5489:-404.5,0,-275.264	0/0:202:202,0:202:7204:0:0:0,-60.8081,-647.919	0/1:72:40,32:40:1440:32:1108:-76.7955,0,-108.044	0/1:36:17,19:17:608:19:664:-48.4365,0,-44.2149	0/1:90:49,41:49:1752:41:1448:-99.6537,0,-130.525	0/0:162:162,0:162:5808:0:0:0,-48.7669,-522.065	0/1:152:89,63:89:3149:63:2217:-151.582,0,-237.511	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.25	0/0:89:89,0:89:3187:0:0:0,-26.7917,-286.805	0/0:152:152,0:152:5433:0:0:0,-45.7566,-488.265	0/1:92:39,53:39:1396:53:1904:-140.176,0,-98.2049	0/1:76:37,39:37:1332:39:1365:-97.62,0,-96.7188	0/1:104:48,56:48:1711:56:1988:-143.165,0,-122.775	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.074	0/1:34:17,17:17:612:17:593:-41.7751,0,-45.1425	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.532	0/1:40:18,22:18:648:22:780:-57.3627,0,-46.6099	0/1:165:90,75:90:3207:75:2684:-187.767,0,-238.68	0/1:191:95,96:95:3400:96:3406:-244.367,0,-248.618	0/1:158:55,103:55:1972:103:3632:-272.754,0,-130.045	0/1:156:93,63:93:3331:63:2232:-150.535,0,-252.191	0/0:104:96,8:96:3440:8:269:0,-7.59643,-285.9	0/0:129:128,1:128:4576:1:36:0,-35.2844,-407.323	0/0:282:282,0:282:10078:0:0:0,-84.8905,-905.487	0/0:269:267,1:267:9550:1:36:0,-77.4824,-854.074	0/1:33:14,19:14:500:19:676:-49.9969,0,-35.4022	0/1:303:135,168:135:4832:168:5909:-426.419,0,-343.14	0/0:131:130,1:130:4646:1:36:0,-35.8864,-414.048	0/0:83:83,0:83:2947:0:0:0,-24.9855,-265.352	1/1:2:0,2:0:0:2:72:-6.74218,-0.60206,0	0/0:41:41,0:41:1467:0:0:0,-12.3422,-132.171	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7036	0/0:26:25,1:25:900:1:36:0,-4.26816,-77.7261	0/1:310:162,148:162:5796:148:5296:-372.771,0,-427.081	0/0:138:138,0:138:4929:0:0:0,-41.5421,-443.168	0/0:55:55,0:55:1955:0:0:0,-16.5566,-174.978	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:106:50,56:50:1780:56:2000:-142.478,0,-127.118	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:187:88,99:88:3152:99:3540:-255.434,0,-227.318	0/1:67:36,31:36:1280:31:1108:-77.1061,0,-94.9084	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.247	0/0:158:158,0:158:5647:0:0:0,-47.5627,-507.531	0/1:214:106,108:106:3792:108:3818:-273.034,0,-276.546	0/0:257:254,3:254:9082:3:108:0,-67.4289,-806.716	0/1:118:58,60:58:2075:60:2112:-150.599,0,-151.158	0/0:133:132,1:132:4732:1:36:0,-36.4885,-420.453	0/0:167:167,0:167:5960:0:0:0,-50.272,-535.479	0/1:11:7,4:7:252:4:144:-9.36125,0,-19.6701	0/1:203:107,96:107:3836:96:3381:-239.421,0,-284.168	0/0:59:59,0:59:2096:0:0:0,-17.7608,-187.858	0/1:6:2,4:2:72:4:144:-11.3607,0,-5.03054	0/0:194:194,0:194:6925:0:0:0,-58.3998,-622.454	0/1:55:32,23:32:1144:23:808:-54.8075,0,-85.7922	0/1:13:5,8:5:180:8:284:-21.478,0,-12.6346	0/1:14:10,4:10:360:4:140:-8.53869,0,-28.4094	0/0:115:115,0:115:4095:0:0:0,-34.6184,-368.2	0/1:135:69,66:69:2480:66:2356:-166.066,0,-182.662	0/1:8:1,7:1:36:7:252:-20.3023,0,-1.19003	0/1:246:116,130:116:4155:130:4581:-328.023,0,-299.438	0/1:195:93,102:93:3324:102:3593:-256.711,0,-239.48	0/1:62:45,17:45:1603:17:593:-34.3346,0,-125.578	0/1:103:49,54:49:1734:54:1920:-137.974,0,-124.964	0/0:149:149,0:149:5302:0:0:0,-44.8535,-474.971	0/0:190:190,0:190:6780:0:0:0,-57.1957,-608.389	0/1:45:19,26:19:684:26:928:-69.1845,0,-48.3416	0/1:103:59,44:59:2088:44:1556:-106.482,0,-157.169	0/1:50:35,15:35:1260:15:527:-31.9451,0,-98.4862	0/0:27:27,0:27:968:0:0:0,-8.12781,-86.8932	0/1:229:112,117:112:3995:117:4119:-297.626,0,-290.497	0/0:85:85,0:85:3025:0:0:0,-25.5875,-271.245	0/0:219:219,0:219:7790:0:0:0,-65.9256,-700.089	0/0:242:242,0:242:8646:0:0:0,-72.8493,-776.727	0/1:106:58,48:58:2059:48:1716:-119.952,0,-153.627	0/0:123:122,1:122:4364:1:32:0,-34.0805,-389.506	0/1:15:8,7:8:284:7:252:-18.2597,0,-21.3879	0/0:148:147,0:147:5238:0:0:0,-44.2514,-470.834	0/1:94:65,29:65:2327:29:1005:-60.8665,0,-181.169	0/0:249:249,0:249:8899:0:0:0,-74.9565,-798.933	0/1:73:33,40:33:1184:40:1432:-105.048,0,-84.723	0/1:103:53,50:53:1904:50:1792:-126.498,0,-140.502	0/0:58:58,0:58:2076:0:0:0,-17.4597,-186.471	0/1:185:94,91:94:3355:91:3245:-230.697,0,-244.918	0/1:24:13,11:13:468:11:396:-28.3485,0,-35.2345	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.224	0/1:125:58,67:58:2088:67:2388:-172.507,0,-150.49	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.404	0/1:157:76,81:76:2706:81:2892:-206.634,0,-196.37	0/1:86:26,60:26:932:60:2148:-162.615,0,-56.5243	0/0:149:149,0:149:5318:0:0:0,-44.8535,-478.462	0/0:128:128,0:128:4596:0:0:0,-38.5318,-413.077
chr05	26950490	.	CTT	ATT,ATG	276138	PASS	AB=0.631973,0.365676;ABP=710.85,736.294;AC=137,49;AF=0.736559,0.263441;AN=186;AO=8770,1725;CIGAR=1X2M,1X1M1X;DP=10526;DPB=10526;DPRA=33.0267,0.851785;EPP=19012.1,3748.8;EPPR=5.18177;GTI=6;LEN=1,3;MEANALT=1.84615,2.18868;MQM=59.1842,39.3907;MQMR=60;NS=93;NUMALT=2;ODDS=5.58787;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=312900,60313;QR=28;RO=1;RPL=4423,1;RPP=4.44045,3740.12;RPPR=5.18177;RPR=4347,1724;RUN=1,1;SAF=4427,1;SAP=4.75738,3740.12;SAR=4343,1724;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:45:0,24,21:0:0:24,21:855,744:-128.287,-58.8034,-51.5786,-69.8321,0,-63.5105	1/1:146:0,146,0:0:0:146,0:5223,0:-469.955,-43.9504,0,-469.955,-43.9504,-469.955	1/2:184:0,120,63:0:0:120,63:4262,2180:-517.806,-170.706,-134.583,-347.189,0,-328.225	1/1:225:0,224,0:0:0:224,0:7979,0:-717.711,-67.4307,0,-717.711,-67.4307,-717.711	1/2:33:0,20,13:0:0:20,13:712,454:-93.5133,-35.4749,-29.4543,-58.3809,0,-54.4675	1/2:54:0,41,13:0:0:41,13:1460,440:-153.329,-34.3345,-21.9922,-119.327,0,-115.413	1/2:111:0,51,59:0:0:51,59:1802,2075:-305.985,-159.588,-144.236,-146.488,0,-128.727	1/1:229:0,228,0:0:0:228,0:8101,0:-728.246,-68.6348,0,-728.246,-68.6348,-728.246	1/2:197:0,104,93:0:0:104,93:3732,3282:-562.046,-257.79,-226.483,-304.605,0,-276.609	1/1:146:0,146,0:0:0:146,0:5176,0:-465.882,-43.9504,0,-465.882,-43.9504,-465.882	1/1:88:0,87,0:0:0:87,0:3112,0:-279.95,-26.1896,0,-279.95,-26.1896,-279.95	1/1:162:0,162,0:0:0:162,0:5738,0:-515.989,-48.7669,0,-515.989,-48.7669,-515.989	1/2:116:0,61,55:0:0:61,55:2184,1959:-331.118,-153.066,-134.703,-178.402,0,-161.845	1/2:53:0,45,8:0:0:45,8:1616,272:-153.368,-21.5428,-7.99646,-132.158,0,-129.75	1/2:118:0,77,41:0:0:77,41:2749,1443:-335.926,-111.816,-88.6364,-224.453,0,-212.111	1/1:130:0,130,0:0:0:130,0:4660,0:-419.506,-39.1339,0,-419.506,-39.1339,-419.506	1/2:77:0,65,12:0:0:65,12:2332,430:-224.389,-34.1822,-14.6152,-190.556,0,-186.943	1/1:114:0,114,0:0:0:114,0:4081,0:-367.138,-34.3174,0,-367.138,-34.3174,-367.138	1/2:47:0,35,12:0:0:35,12:1256,428:-136.46,-34.0371,-23.5011,-102.771,0,-99.1588	1/2:171:0,110,61:0:0:110,61:3906,2133:-481.564,-163.315,-130.201,-318.589,0,-300.226	1/2:209:0,126,83:0:0:126,83:4479,2889:-587.999,-223.319,-185.39,-365.021,0,-340.036	1/2:61:0,27,33:0:0:27,33:968,1123:-165.748,-86.7833,-78.6555,-78.9657,0,-69.0317	1/2:129:0,86,42:0:0:86,42:3060,1460:-361.718,-112.352,-86.4637,-249.35,0,-236.706	1/1:137:0,135,2:0:0:135,2:4833,72:-434.72,-40.6391,0,-429.104,-34.6776,-428.502	1/1:102:0,102,0:0:0:102,0:3656,0:-329.171,-30.7051,0,-329.171,-30.7051,-329.171	1/1:353:0,350,0:0:0:350,0:12439,0:-1118.93,-105.361,0,-1118.93,-105.361,-1118.93	1/1:290:0,290,0:0:0:290,0:10361,0:-932.189,-87.2987,0,-932.189,-87.2987,-932.189	1/2:51:0,34,17:0:0:34,17:1220,592:-145.476,-45.9598,-35.7248,-99.8572,0,-94.7397	1/2:222:0,137,85:0:0:137,85:4884,2978:-627.146,-229.311,-188.07,-398.177,0,-372.589	1/1:133:0,131,1:0:0:131,1:4688,36:-421.668,-39.4349,0,-418.86,-36.6329,-418.559	1/1:148:0,146,0:0:0:146,0:5218,0:-469.419,-43.9504,0,-469.419,-43.9504,-469.419	1/2:7:0,5,2:0:0:5,2:180,64:-20.0307,-5.3145,-3.80935,-15.0414,0,-14.4393	1/1:8:0,8,0:0:0:8,0:288,0:-26.2666,-2.40824,0,-26.2666,-2.40824,-26.2666	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:15:0,15,0:0:0:15,0:536,0:-48.5664,-4.51545,0,-48.5664,-4.51545,-48.5664	1/1:5:0,5,0:0:0:5,0:171,0:-15.719,-1.50515,0,-15.719,-1.50515,-15.719	1/2:262:0,192,68:0:0:192,68:6803,2424:-740.726,-186.552,-128.755,-554.174,0,-533.704	1/1:136:0,135,0:0:0:135,0:4836,0:-435.109,-40.6391,0,-435.109,-40.6391,-435.109	1/1:104:0,104,0:0:0:104,0:3708,0:-333.826,-31.3071,0,-333.826,-31.3071,-333.826	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:129:0,88,41:0:0:88,41:3160,1411:-368.444,-110.684,-84.1933,-258.101,0,-245.758	1/1:34:0,33,0:0:0:33,0:1184,0:-106.557,-9.93399,0,-106.557,-9.93399,-106.557	1/2:145:0,102,43:0:0:102,43:3612,1502:-411.338,-117.176,-86.471,-294.503,0,-281.559	1/2:91:0,61,30:0:0:61,30:2166,1050:-258.096,-81.6339,-63.271,-176.804,0,-167.773	1/1:108:0,108,0:0:0:108,0:3876,0:-349.023,-32.5112,0,-349.023,-32.5112,-349.023	1/1:84:0,84,0:0:0:84,0:3003,0:-270.338,-25.2865,0,-270.338,-25.2865,-270.338	1/2:102:0,60,42:0:0:60,42:2142,1448:-286.611,-112.07,-94.0082,-174.881,0,-162.238	1/1:188:0,188,0:0:0:188,0:6679,0:-600.816,-56.5936,0,-600.816,-56.5936,-600.816	1/2:80:0,59,21:0:0:59,21:2115,738:-229.374,-56.8988,-39.138,-172.815,0,-166.493	1/1:157:0,155,1:0:0:155,1:5526,34:-497.089,-46.6597,0,-494.401,-43.9856,-494.1	1/1:156:0,155,0:0:0:155,0:5541,0:-498.513,-46.6597,0,-498.513,-46.6597,-498.513	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:158:1,91,66:1:28:91,66:3257,2313:-444.711,-179.471,-154.295,-263.389,0,-245.739	1/1:87:0,87,0:0:0:87,0:3116,0:-280.621,-26.1896,0,-280.621,-26.1896,-280.621	.:.:.:.:.:.:.:.	1/1:124:0,124,0:0:0:124,0:4409,0:-396.9,-37.3277,0,-396.9,-37.3277,-396.9	1/2:42:0,23,19:0:0:23,19:824,676:-119.861,-52.64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chr05	26950500	.	A	C	20786.5	PASS	AB=0.360277;ABP=787.617;AC=49;AF=0.263441;AN=186;AO=1680;CIGAR=1X;DP=10464;DPB=10464;DPRA=0.831181;EPP=3651.08;EPPR=19077.2;GTI=6;LEN=1;MEANALT=1;MQM=39.503;MQMR=59.1634;NS=93;NUMALT=1;ODDS=5.08338;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59750;QR=313162;RO=8784;RPL=0;RPP=3651.08;RPPR=6.81137;RPR=1680;RUN=1;SAF=0;SAP=3651.08;SAR=1680;SRF=4454;SRP=6.81137;SRR=4330;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:25,21:25:872:21:740:-51.0423,0,-64.7345	0/0:145:145,0:145:5170:0:0:0,-43.6493,-465.21	0/1:180:117,63:117:4163:63:2240:-139.197,0,-320.488	0/0:224:224,0:224:8012:0:0:0,-67.4307,-721.003	0/1:32:20,12:20:697:12:420:-26.7902,0,-53.4127	0/1:53:41,12:41:1460:12:428:-20.8791,0,-115.718	0/1:111:55,56:55:1960:56:2007:-137.677,0,-141.927	0/0:230:230,0:230:8223:0:0:0,-69.2369,-739.322	0/1:192:102,90:102:3638:90:3198:-220.26,0,-269.664	0/0:145:145,0:145:5167:0:0:0,-43.6493,-465.05	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.278	0/0:161:161,0:161:5725:0:0:0,-48.4658,-514.131	0/1:117:61,56:61:2162:56:1967:-135.331,0,-159.564	0/1:52:44,8:44:1563:8:273:-8.33681,0,-125.282	0/1:112:73,39:73:2603:39:1404:-86.6418,0,-200.785	0/0:131:131,0:131:4655:0:0:0,-39.4349,-419.069	0/1:78:66,12:66:2347:12:428:-14.1575,0,-187.991	0/0:114:114,0:114:4006:0:0:0,-34.3174,-360.136	0/1:46:34,12:34:1220:12:432:-24.0922,0,-96.2229	0/1:166:109,57:109:3869:57:2035:-122.731,0,-298.41	0/1:204:123,81:123:4400:81:2868:-184.858,0,-334.673	0/1:59:28,31:28:1008:31:1082:-75.6519,0,-73.2747	0/1:125:86,39:86:3068:39:1392:-81.3633,0,-238.654	0/0:135:133,2:133:4761:2:72:0,-34.0755,-422.027	0/0:105:105,0:105:3763:0:0:0,-31.6081,-338.796	0/0:356:356,0:356:12683:0:0:0,-107.167,-1140.66	0/0:293:293,0:293:10473:0:0:0,-88.2018,-942.196	0/1:51:33,18:33:1180:18:640:-39.8304,0,-91.1402	0/1:221:135,86:135:4843:86:3067:-195.285,0,-368.851	0/0:132:131,1:131:4685:1:36:0,-36.2815,-418.274	0/0:151:151,0:151:5382:0:0:0,-45.4555,-484.219	0/1:7:5,2:5:176:2:72:-4.45632,0,-14.0751	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2666	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1126	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1781	0/1:262:192,70:192:6802:70:2499:-134.883,0,-533.375	0/0:137:137,0:137:4897:0:0:0,-41.2411,-440.659	0/0:105:105,0:105:3751:0:0:0,-31.6081,-337.583	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:130:89,41:89:3165:41:1431:-85.3959,0,-245.902	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.025	0/1:148:107,41:107:3812:41:1463:-81.411,0,-298.686	0/1:93:62,31:62:2199:31:1104:-67.1746,0,-170.121	0/0:108:108,0:108:3838:0:0:0,-32.5112,-345.586	0/0:83:83,0:83:2976:0:0:0,-24.9855,-267.768	0/1:101:60,41:60:2139:41:1453:-93.6506,0,-162.167	0/0:188:188,0:188:6718:0:0:0,-56.5936,-604.1	0/1:80:60,20:60:2138:20:720:-37.341,0,-168.48	0/0:153:153,0:153:5479:0:0:0,-46.0576,-493.177	0/0:155:155,0:155:5524:0:0:0,-46.6596,-497.236	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:158:92,66:92:3270:66:2355:-157.615,0,-246.892	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.179	.:.:.:.:.:.:.:.	0/0:125:125,0:125:4429:0:0:0,-37.6287,-398.717	0/1:42:22,20:22:784:20:689:-47.1543,0,-58.2407	1/1:6:0,6:0:0:6:216:-18.8298,-1.80618,0	0/1:13:11,2:11:396:2:72:-2.59145,0,-32.0694	0/0:133:133,0:133:4751:0:0:0,-40.037,-427.637	0/1:106:74,32:74:2635:32:1136:-64.5075,0,-205.482	1/1:1:0,1:0:0:1:36:-3.4236,-0.30103,0	0/1:128:69,59:69:2467:59:2101:-141.841,0,-183.75	0/1:222:165,57:165:5866:57:2020:-106.646,0,-461.067	0/1:87:22,65:22:792:65:2323:-174.493,0,-45.4081	0/1:87:44,43:44:1569:43:1518:-103.659,0,-115.271	0/0:208:208,0:208:7439:0:0:0,-62.6142,-668.011	0/0:169:168,1:168:6004:1:36:0,-47.4505,-535.243	0/1:35:22,13:22:788:13:464:-29.938,0,-60.6877	0/1:54:33,21:33:1164:21:756:-48.8809,0,-88.7588	0/1:71:50,21:50:1769:21:756:-43.6753,0,-138.095	0/0:23:23,0:23:819:0:0:0,-6.92369,-73.9957	0/1:120:63,57:63:2226:57:2027:-140.062,0,-164.305	0/0:84:83,1:83:2959:1:36:0,-21.8058,-263.014	0/0:272:272,0:272:9723:0:0:0,-81.8802,-874.701	0/0:215:215,0:215:7648:0:0:0,-64.7214,-687.372	0/1:95:67,28:67:2395:28:1008:-59.2518,0,-187.085	0/0:169:169,0:169:6040:0:0:0,-50.8741,-543.285	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.975	0/0:132:132,0:132:4695:0:0:0,-39.736,-422.599	0/1:100:52,48:52:1845:48:1720:-117.391,0,-136.185	0/0:228:228,0:228:8133:0:0:0,-68.6348,-731.692	0/1:99:72,27:72:2564:27:972:-53.3337,0,-201.159	0/1:82:53,29:53:1888:29:1031:-63.1151,0,-145.513	0/0:154:154,0:154:5474:0:0:0,-46.3586,-492.503	0/1:202:148,54:148:5275:54:1920:-102.741,0,-413.92	0/1:40:24,16:24:860:16:563:-35.9018,0,-65.6636	0/0:108:108,0:108:3831:0:0:0,-32.5112,-344.918	0/1:92:67,25:67:2408:25:892:-50.2769,0,-189.219	0/0:48:48,0:48:1708:0:0:0,-14.4494,-153.98	0/1:63:49,14:49:1748:14:484:-23.1568,0,-138.628	0/1:65:34,31:34:1204:31:1112:-74.6206,0,-89.0946	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.894	0/0:216:215,1:215:7670:1:36:0,-61.5989,-686.866
chr05	26950507	.	C	T	20649.9	PASS	AB=0.361915;ABP=764.023;AC=49;AF=0.263441;AN=186;AO=1676;CIGAR=1X;DP=10327;DPB=10327;DPRA=0.854276;EPP=3642.4;EPPR=18755.9;GTI=6;LEN=1;MEANALT=1.01887;MQM=39.5292;MQMR=59.1846;NS=93;NUMALT=1;ODDS=0.688293;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59467;QR=306259;RO=8648;RPL=0;RPP=3642.4;RPPR=4.8674;RPR=1676;RUN=1;SAF=0;SAP=3642.4;SAR=1676;SRF=4364;SRP=4.61731;SRR=4284;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:22,21:22:784:21:756:-53.1047,0,-57.7304	0/0:142:142,0:142:5025:0:0:0,-42.7463,-452.155	0/1:179:117,62:117:4131:62:2186:-135.241,0,-317.848	0/0:228:227,0:227:8059:0:0:0,-68.3338,-725.071	0/1:32:20,12:20:716:12:432:-27.6577,0,-55.1291	0/1:52:40,12:40:1428:12:432:-21.4819,0,-113.141	0/1:108:52,56:52:1859:56:2001:-138.084,0,-133.74	0/0:224:224,0:224:7875:0:0:0,-67.4307,-708.066	0/1:190:101,89:101:3559:89:3173:-217.723,0,-263.165	0/0:143:143,0:143:5062:0:0:0,-43.0473,-455.612	0/0:86:86,0:86:3037:0:0:0,-25.8886,-273.549	0/0:158:158,0:158:5557:0:0:0,-47.5627,-499.005	0/1:115:62,53:62:2196:53:1888:-128.813,0,-163.228	0/1:52:44,8:44:1539:8:288:-9.39803,0,-123.119	0/1:114:73,41:73:2591:41:1453:-90.3856,0,-199.104	0/0:133:133,0:133:4688:0:0:0,-40.037,-422.032	0/1:77:65,12:65:2305:12:428:-14.4586,0,-184.514	0/0:112:112,0:112:3991:0:0:0,-33.7154,-358.687	0/1:46:35,11:35:1229:11:381:-19.7005,0,-97.0264	0/1:165:107,58:107:3828:58:2057:-125.07,0,-294.971	0/1:206:125,81:125:4444:81:2881:-184.508,0,-338.015	0/1:60:27,33:27:968:33:1188:-83.8013,0,-69.3747	0/1:128:85,43:85:3044:43:1521:-91.7185,0,-235.588	0/0:135:133,2:133:4712:2:72:0,-34.0755,-417.626	0/0:101:101,0:101:3606:0:0:0,-30.404,-324.674	0/0:348:348,0:348:12368:0:0:0,-104.758,-1112.83	0/0:278:277,0:277:9846:0:0:0,-83.3853,-885.624	0/1:48:32,16:32:1127:16:557:-33.5706,0,-87.2716	0/1:216:133,82:133:4706:82:2902:-182.869,0,-358.757	0/0:132:131,1:131:4672:1:36:0,-36.2815,-417.126	0/0:149:149,0:149:5327:0:0:0,-44.8535,-479.39	0/1:7:5,2:5:180:2:72:-4.45632,0,-14.4393	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2666	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.7934	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5442	0/1:258:191,67:191:6704:67:2400:-127.732,0,-525.776	0/0:131:131,0:131:4625:0:0:0,-39.4349,-416.387	0/0:104:104,0:104:3679:0:0:0,-31.3071,-331.126	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:128:87,41:87:3100:41:1468:-89.0659,0,-240.665	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.856	0/1:149:108,41:108:3764:41:1449:-80.0194,0,-294.056	0/1:91:60,31:60:2111:31:1103:-67.6457,0,-162.817	0/0:102:102,0:102:3569:0:0:0,-30.7051,-321.415	0/0:82:82,0:82:2911:0:0:0,-24.6845,-261.918	0/1:99:59,40:59:2092:40:1425:-91.5324,0,-158.535	0/0:183:183,0:183:6485:0:0:0,-55.0885,-583.231	0/1:80:60,20:60:2114:20:690:-34.8034,0,-166.321	0/0:153:152,1:152:5350:1:36:0,-42.5769,-478.133	0/0:155:155,0:155:5478:0:0:0,-46.6596,-493.082	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:157:93,64:93:3299:64:2296:-153.053,0,-249.801	0/0:86:86,0:86:3025:0:0:0,-25.8886,-272.424	.:.:.:.:.:.:.:.	0/0:116:116,0:116:4121:0:0:0,-34.9195,-371.036	0/1:43:22,21:22:784:21:729:-50.3106,0,-57.9396	1/1:5:0,5:0:0:5:161:-14.2463,-1.50515,0	0/1:13:11,2:11:396:2:72:-2.59145,0,-32.0694	0/0:131:131,0:131:4658:0:0:0,-39.4349,-419.306	0/1:105:75,30:75:2638:30:1030:-55.9686,0,-206.049	1/1:1:0,1:0:0:1:36:-3.4236,-0.30103,0	0/1:129:66,63:66:2332:63:2252:-153.861,0,-171.305	0/1:220:159,61:159:5657:61:2130:-115.926,0,-442.726	0/1:93:27,66:27:972:66:2330:-172.318,0,-59.791	0/1:85:41,44:41:1445:44:1568:-108.603,0,-104.718	0/0:207:207,0:207:7354:0:0:0,-62.3132,-660.353	0/0:166:165,1:165:5865:1:36:0,-46.5474,-524.492	0/1:36:23,13:23:811:13:460:-29.348,0,-62.4651	0/1:53:32,21:32:1139:21:756:-49.182,0,-86.8071	0/1:72:51,21:51:1815:21:752:-43.0304,0,-141.932	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4475	0/1:119:62,57:62:2202:57:2029:-140.432,0,-162.431	0/0:84:83,1:83:2934:1:36:0,-21.8058,-260.753	0/0:269:269,0:269:9526:0:0:0,-80.9771,-857.022	0/0:211:211,0:211:7524:0:0:0,-63.5173,-676.565	0/1:91:63,28:63:2243:28:1004:-60.1558,0,-174.618	0/0:163:163,0:163:5731:0:0:0,-49.0679,-515.483	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6123	0/0:127:127,0:127:4516:0:0:0,-38.2308,-406.22	0/1:100:52,48:52:1849:48:1694:-114.276,0,-136.537	0/0:223:223,0:223:7879:0:0:0,-67.1297,-708.901	0/1:101:74,27:74:2587:27:960:-52.0924,0,-202.39	0/1:85:53,32:53:1869:32:1139:-71.4564,0,-142.899	0/0:155:155,0:155:5448:0:0:0,-46.6596,-490.158	0/1:197:143,54:143:5093:54:1909:-103.156,0,-399.108	0/1:37:24,13:24:842:13:428:-26.1446,0,-64.9419	0/0:106:106,0:106:3747:0:0:0,-31.9092,-337.362	0/1:95:69,26:69:2430:26:932:-52.9685,0,-189.874	0/0:49:49,0:49:1699:0:0:0,-14.7505,-153.15	0/1:62:48,14:48:1708:14:504:-24.8905,0,-135.329	0/1:59:33,26:33:1184:26:913:-59.5435,0,-89.102	0/0:33:33,0:33:1160:0:0:0,-9.93399,-104.665	0/0:212:211,1:211:7432:1:36:0,-60.3948,-665.483
chr05	26950561	.	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chr05	26950594	.	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chr05	26950627	.	A	G	54963.3	PASS	AB=0.481374;ABP=18.5418;AC=51;AF=0.271277;AN=188;AO=2510;CIGAR=1X;DP=10311;DPB=10311;DPRA=0.941178;EPP=10.0178;EPPR=51.451;GTI=1;LEN=1;MEANALT=1.06667;MQM=59.9502;MQMR=59.9968;NS=94;NUMALT=1;ODDS=1.93242;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88446;QR=278950;RO=7795;RPL=1300;RPP=10.0178;RPPR=51.451;RPR=1210;RUN=1;SAF=0;SAP=5453.41;SAR=2510;SRF=0;SRP=16929.6;SRR=7795;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:48,37:48:1724:37:1296:-91.3535,0,-129.858	0/0:90:89,1:89:3196:1:36:0,-23.4944,-284.264	0/1:205:129,76:129:4632:76:2699:-181.415,0,-355.33	0/0:368:368,0:368:13177:0:0:0,-110.779,-1185.73	0/1:62:45,17:45:1612:17:608:-36.3882,0,-126.706	0/1:71:52,18:52:1840:18:640:-36.4976,0,-144.446	0/1:206:95,111:95:3408:111:3904:-289.544,0,-244.922	0/0:107:107,0:107:3807:0:0:0,-32.2102,-342.827	0/1:200:102,98:102:3651:98:3427:-248.44,0,-268.588	0/0:108:108,0:108:3875:0:0:0,-32.5112,-348.943	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:105:104,0:104:3740:0:0:0,-31.3071,-336.439	0/1:114:53,61:53:1904:61:2120:-156.745,0,-137.32	0/1:50:21,29:21:756:29:986:-73.991,0,-53.3157	0/1:92:42,50:42:1504:50:1760:-130.986,0,-107.96	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:35:14,21:14:495:21:717:-54.3095,0,-34.347	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:30:15,15:15:540:15:540:-39.9056,0,-39.9056	0/1:164:92,72:92:3292:72:2537:-179.212,0,-247.131	0/1:220:84,136:84:3020:136:4813:-367.103,0,-205.803	0/1:126:41,84:41:1472:84:3000:-232.283,0,-94.8265	0/1:130:69,61:69:2476:61:2176:-156.973,0,-183.96	0/0:133:124,9:124:4447:9:320:0,-10.8946,-371.257	0/0:171:171,0:171:6136:0:0:0,-51.4761,-552.338	0/0:326:326,0:326:11649:0:0:0,-98.1358,-1048.28	0/0:278:278,0:278:9944:0:0:0,-83.6863,-894.898	0/1:36:22,14:22:788:14:491:-33.684,0,-60.4077	0/1:374:202,172:202:7225:172:6040:-430.758,0,-537.717	0/0:126:118,8:118:4182:8:280:0,-12.3905,-351.026	0/0:132:132,0:132:4705:0:0:0,-39.736,-423.61	0/1:15:5,10:5:176:10:360:-28.2289,0,-11.6696	0/0:26:25,1:25:887:1:36:0,-4.2285,-76.5498	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:229:119,110:119:4268:110:3855:-278.212,0,-315.362	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:241:131,110:131:4686:110:3882:-277.03,0,-349.351	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:169:116,53:116:4131:53:1853:-116.173,0,-321.099	0/1:81:32,49:32:1122:49:1743:-132.77,0,-76.9004	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:255:255,0:255:9142:0:0:0,-76.7626,-822.749	0/1:111:59,52:59:2107:52:1823:-130.933,0,-156.484	0/0:246:245,1:245:8753:1:36:0,-70.4551,-784.162	0/1:106:47,59:47:1680:59:2046:-152.5,0,-119.578	0/0:96:96,0:96:3443:0:0:0,-28.8989,-310.082	0/0:194:194,0:194:6921:0:0:0,-58.3998,-622.958	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:94:55,39:55:1976:39:1382:-96.3805,0,-149.818	0/0:126:126,0:126:4503:0:0:0,-37.9298,-405.439	0/1:28:15,13:15:540:13:440:-31.4931,0,-40.5077	0/0:190:190,0:190:6785:0:0:0,-57.1957,-610.723	0/1:98:64,34:64:2291:34:1186:-77.5423,0,-176.95	0/1:22:17,5:17:612:5:176:-9.56236,0,-48.7908	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/0:137:135,2:135:4806:2:68:0,-34.7834,-426.24	0/1:102:46,56:46:1628:56:1969:-146.777,0,-116.101	0/1:15:12,3:12:428:3:108:-5.55972,0,-34.3434	0/1:167:78,89:78:2796:89:3161:-234.443,0,-201.608	0/1:133:45,88:45:1616:88:3119:-240.901,0,-105.693	0/1:98:53,45:53:1895:45:1599:-114.699,0,-141.326	0/1:139:73,66:73:2620:66:2339:-168.926,0,-194.204	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/0:116:112,4:112:3999:4:144:0,-21.6059,-346.786	0/1:36:12,23:12:423:23:812:-62.5436,0,-27.5466	0/1:38:21,17:21:752:17:590:-41.985,0,-56.5671	0/1:44:30,14:30:1076:14:494:-31.5481,0,-83.9075	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:185:97,88:97:3471:88:3107:-224.079,0,-256.911	0/0:91:90,0:90:3232:0:0:0,-27.0927,-290.901	0/0:165:165,0:165:5924:0:0:0,-49.6699,-533.266	0/0:129:129,0:129:4615:0:0:0,-38.8329,-415.507	0/1:97:67,30:67:2393:30:1076:-67.9529,0,-186.426	0/0:84:84,0:84:2989:0:0:0,-25.2865,-269.241	0/1:18:8,10:8:279:10:356:-26.9627,0,-20.029	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.48	0/1:128:71,57:71:2544:57:2005:-142.188,0,-190.679	0/0:324:322,2:322:11538:2:72:0,-90.697,-1031.45	0/1:65:29,36:29:1044:36:1283:-96.1919,0,-74.7079	0/1:66:37,29:37:1332:29:1014:-71.702,0,-100.314	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:133:65,68:65:2325:68:2391:-175.409,0,-169.471	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	0/0:84:82,1:82:2928:1:36:0,-21.747,-260.154	0/1:69:36,33:36:1278:33:1188:-86.4575,0,-94.5506	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:79:49,30:49:1742:30:1032:-69.3787,0,-133.282	0/1:92:24,68:24:851:68:2383:-187.031,0,-49.2147	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/0:119:119,0:119:4263:0:0:0,-35.8226,-383.845
chr05	26963091	.	C	G	182705	PASS	AB=0.499181;ABP=3.04589;AC=137;AF=0.728723;AN=188;AO=8826;CIGAR=1X;DP=11909;DPB=11909;DPRA=0;EPP=19090.3;EPPR=6634.76;GTI=0;LEN=1;MEANALT=1.09574;MQM=59.8962;MQMR=59.9733;NS=94;NUMALT=1;ODDS=4.27922;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312747;QR=109723;RO=3074;RPL=8817;RPP=19090.3;RPPR=6634.76;RPR=9;RUN=1;SAF=0;SAP=19168.4;SAR=8826;SRF=0;SRP=6678.12;SRR=3074;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:21,25:21:747:25:892:-66.7523,0,-53.7069	1/1:235:1,234:1:36:234:8300:-743.401,-67.1438,0	0/1:196:110,85:110:3940:85:3023:-213.24,0,-295.73	1/1:233:2,231:2:72:231:8176:-728.918,-63.3033,0	0/1:74:50,24:50:1783:24:844:-54.0027,0,-138.476	0/1:76:49,27:49:1760:27:955:-63.3866,0,-135.806	0/1:191:114,76:114:4042:76:2712:-186.822,0,-306.514	1/1:188:0,188:0:0:188:6696:-602.671,-56.5936,0	0/1:94:55,39:55:1963:39:1369:-95.2094,0,-148.648	1/1:118:0,117:0:0:117:4145:-372.859,-35.2205,0	1/1:170:0,170:0:0:170:6028:-542.628,-51.1751,0	1/1:122:0,122:0:0:122:4285:-385.827,-36.7257,0	0/1:106:60,46:60:2122:46:1626:-114.718,0,-159.339	0/1:169:80,89:80:2843:89:3139:-231.862,0,-205.235	0/1:87:53,34:53:1895:34:1191:-81.3047,0,-144.638	1/1:92:0,92:0:0:92:3271:-294.611,-27.6948,0	0/1:141:71,70:71:2544:70:2453:-178.58,0,-186.765	1/1:97:0,97:0:0:97:3455:-311.159,-29.1999,0	0/1:120:70,50:70:2508:50:1762:-122.738,0,-189.849	0/1:134:52,82:52:1864:82:2898:-220.719,0,-127.701	0/1:149:73,75:73:2620:75:2652:-194.01,0,-191.134	0/1:81:49,32:49:1756:32:1144:-78.8861,0,-133.941	0/1:55:28,27:28:1004:27:964:-70.5202,0,-74.1192	1/1:156:7,149:7:252:149:5271:-451.505,-23.9317,0	1/1:120:1,119:1:32:119:4242:-378.761,-32.9243,0	1/1:282:0,281:0:0:281:9954:-895.555,-84.5894,0	1/1:267:0,267:0:0:267:9476:-852.807,-80.375,0	0/1:44:22,22:22:788:22:779:-57.1867,0,-57.9995	0/1:313:138,175:138:4895:175:6189:-462.893,0,-346.484	1/1:187:5,182:5:180:182:6461:-565.027,-39.7405,0	1/1:140:0,140:0:0:140:4971:-447.505,-42.1442,0	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	1/1:41:0,41:0:0:41:1446:-130.435,-12.3422,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:8:0,8:0:0:8:276:-25.1752,-2.40824,0	1/1:23:0,23:0:0:23:812:-73.4009,-6.92369,0	0/1:229:113,116:113:4048:116:4108:-300.971,0,-295.571	1/1:209:0,209:0:0:209:7385:-664.706,-62.9153,0	1/1:139:0,139:0:0:139:4933:-444.078,-41.8432,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:195:90,104:90:3203:104:3676:-272.285,0,-229.734	1/1:70:0,70:0:0:70:2469:-222.464,-21.0721,0	0/1:158:72,86:72:2566:86:3043:-226.539,0,-183.626	0/1:70:36,34:36:1279:34:1196:-86.8714,0,-94.3403	1/1:75:0,75:0:0:75:2673:-240.815,-22.5773,0	1/1:82:0,82:0:0:82:2899:-261.145,-24.6845,0	0/1:159:76,83:76:2715:83:2927:-215.8,0,-196.729	1/1:185:1,184:1:36:184:6522:-583.471,-52.0923,0	0/1:96:41,55:41:1468:55:1957:-147.506,0,-103.517	1/1:180:0,179:0:0:179:6340:-570.143,-53.8844,0	1/1:205:0,205:0:0:205:7295:-656.605,-61.7112,0	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/1:536:255,281:255:9103:281:9976:-736.43,0,-657.849	1/1:56:0,56:0:0:56:1984:-178.824,-16.8577,0	0/1:26:16,10:16:567:10:350:-24.0096,0,-43.4889	1/1:177:0,177:0:0:177:6236:-560.056,-53.2823,0	0/1:41:14,27:14:504:27:953:-73.7387,0,-33.3559	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:28:15,13:15:531:13:462:-33.4877,0,-39.6931	1/1:124:0,124:0:0:124:4369:-393.377,-37.3277,0	0/1:206:95,111:95:3399:111:3952:-293.859,0,-244.112	0/1:6:5,1:5:180:1:36:-1.78699,0,-14.7459	0/1:131:73,58:73:2605:58:2062:-146.417,0,-195.26	0/1:219:98,121:98:3520:121:4278:-318.771,0,-251.083	0/1:157:79,78:79:2815:78:2767:-202,0,-206.328	0/1:117:52,65:52:1852:65:2319:-173.7,0,-131.739	1/1:84:0,84:0:0:84:2992:-269.466,-25.2865,0	1/1:186:2,184:2:72:184:6549:-582.659,-49.1549,0	0/1:95:34,61:34:1215:61:2159:-165.979,0,-81.0579	0/1:123:54,69:54:1928:69:2455:-184.042,0,-136.767	0/1:150:78,71:78:2795:71:2500:-180.078,0,-206.61	1/1:20:0,20:0:0:20:712:-63.9146,-6.0206,0	0/1:110:57,53:57:2036:53:1865:-134.457,0,-150.394	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	1/1:315:0,315:0:0:315:11250:-1012.39,-94.8245,0	1/1:112:1,111:1:36:111:3955:-352.475,-30.1171,0	0/1:199:124,75:124:4432:75:2675:-181.085,0,-339.147	1/1:120:1,119:1:36:119:4217:-376.109,-32.5253,0	0/1:18:5,13:5:180:13:456:-35.9547,0,-11.1335	1/1:130:1,129:1:36:129:4597:-410.242,-35.5356,0	0/1:108:40,68:40:1428:68:2428:-186.26,0,-96.3059	1/1:216:0,216:0:0:216:7583:-682.472,-65.0225,0	0/1:123:50,73:50:1779:73:2589:-196.231,0,-123.365	0/1:115:63,52:63:2240:52:1835:-130.793,0,-167.246	1/1:116:0,116:0:0:116:4126:-371.526,-34.9195,0	0/1:131:71,60:71:2540:60:2098:-149.651,0,-189.416	0/1:41:14,27:14:500:27:947:-73.1972,0,-32.9935	1/1:104:0,104:0:0:104:3690:-332.304,-31.3071,0	0/1:98:51,47:51:1820:47:1640:-118.355,0,-134.58	1/1:161:0,161:0:0:161:5606:-504.437,-48.4658,0	0/1:245:121,123:121:4319:123:4371:-319.795,0,-315.115	0/1:65:48,17:48:1690:17:600:-34.7622,0,-132.818	1/1:52:1,51:1:36:51:1807:-159.313,-12.0553,0	1/1:130:1,129:1:36:129:4573:-407.605,-35.5356,0
chr05	26963157	.	GGAG	AGAA,GGAA	509635	PASS	AB=0.523481,0.471122;ABP=47.3692,70.1084;AC=138,50;AF=0.734043,0.265957;AN=188;AO=14868,4425;CIGAR=1X2M1X,3M1X;DP=19384;DPB=19387.5;DPRA=0,1.10648;EPP=32279.8,9611.78;EPPR=24.725;GTI=1;LEN=4,1;MEANALT=2.41489,2.70149;MQM=53.9762,59.8409;MQMR=60;NS=94;NUMALT=2;ODDS=2.31024;PAIRED=0,0;PAIREDR=0;PAO=7,4.5;PQA=225,54;PQR=0;PRO=2.5;QA=513162,155048;QR=343;RO=10;RPL=7968,2270;RPP=169.599,9.50018;RPPR=3.0103;RPR=6900,2155;RUN=1,1;SAF=7967,2270;SAP=168.975,9.50018;SAR=6901,2155;SRF=5;SRP=3.0103;SRR=5;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:101:0,38,63:0:0:38,63:1306,2213:-285.942,-180.461,-169.022,-105.826,0,-86.861	1/1:328:0,326,1:0:0:326,1:11100,32:-996.953,-98.1358,0,-994.375,-95.5458,-994.074	1/2:259:1,159,99:1:25:159,99:5504,3500:-727.925,-283.21,-237.294,-443.167,0,-415.313	1/1:483:0,478,3:0:0:478,3:16556,93:-1477.72,-143.892,0,-1470.25,-136.458,-1469.35	1/2:110:0,59,51:0:0:59,51:2031,1828:-312.986,-149.389,-131.629,-163.888,0,-148.536	1/2:77:0,43,33:0:0:43,33:1511,1149:-215.561,-93.4592,-80.5149,-122.13,0,-112.196	1/2:255:0,137,117:0:0:137,117:4714,4139:-717.227,-337.112,-295.871,-380.103,0,-344.883	1/1:302:0,298,3:0:0:298,3:10235,100:-919.025,-89.7069,0,-911.018,-81.6772,-910.115	1/2:133:1,56,75:1:36:56,75:1969,2671:-373.68,-214.759,-200.838,-156.315,0,-136.676	1/1:238:0,237,1:0:0:237,1:8147,36:-729.893,-71.3441,0,-726.956,-68.0469,-726.655	1/1:157:0,157,0:0:0:157,0:5411,0:-485.792,-47.2617,0,-485.792,-47.2617,-485.792	1/1:232:0,231,0:0:0:231,0:7879,0:-705.157,-69.5379,0,-705.157,-69.5379,-705.157	1/2:169:0,87,82:0:0:87,82:3056,2907:-484.413,-237.163,-210.973,-247.603,0,-222.918	1/2:207:0,117,88:0:0:117,88:4035,3113:-580.623,-253.539,-218.319,-327.074,0,-300.583	1/2:142:0,76,65:0:0:76,65:2630,2267:-394.909,-184.363,-161.484,-210.533,0,-190.966	1/1:191:0,190,0:0:0:190,0:6466,0:-580.269,-57.1957,0,-580.269,-57.1957,-580.269	1/2:141:0,83,57:0:0:83,57:2842,1979:-391.315,-160.964,-135.978,-230.445,0,-213.286	1/1:154:0,154,0:0:0:154,0:5274,0:-473.635,-46.3586,0,-473.635,-46.3586,-473.635	1/2:102:0,54,48:0:0:54,48:1879,1695:-290.867,-138.378,-122.122,-152.84,0,-138.39	1/2:392:0,224,168:0:0:224,168:7794,5915:-1112.03,-481.891,-414.46,-630.486,0,-579.913	1/2:280:0,131,149:0:0:131,149:4578,5215:-795.273,-424.623,-385.188,-370.999,0,-326.145	1/2:241:0,73,167:0:0:73,167:2527,5910:-685.718,-481.379,-459.404,-204.327,0,-154.055	1/2:126:0,70,53:0:0:70,53:2451,1872:-350.546,-152.439,-131.367,-198.111,0,-182.156	1/1:232:0,210,20:0:0:210,20:7224,712:-648.216,-63.2163,0,-590.189,-5.15074,-584.169	1/1:215:0,209,0:0:0:209,0:7188,0:-644.004,-62.9153,0,-644.004,-62.9153,-644.004	1/1:576:0,575,0:0:0:575,0:19927,0:-1785.58,-173.092,0,-1785.58,-173.092,-1785.58	1/1:556:0,555,1:0:0:555,1:19212,32:-1719.06,-167.072,0,-1716.48,-164.173,-1716.18	1/2:95:1,46,47:1:36:46,47:1610,1671:-263.547,-133.214,-122.304,-127.699,0,-116.488	1/2:536:0,284,251:0:0:284,251:9876,8835:-1515.68,-719.244,-633.752,-796.448,0,-720.89	1/1:325:0,311,12:0:0:311,12:10586,428:-949.358,-93.6203,0,-914.468,-58.7161,-910.855	1/1:174:0,174,0:0:0:174,0:5962,0:-532.041,-52.3792,0,-532.041,-52.3792,-532.041	1/2:14:0,8,6:0:0:8,6:281,208:-39.6988,-17.2529,-14.8447,-22.7918,0,-20.9856	1/1:43:0,43,0:0:0:43,0:1507,0:-134.775,-12.9443,0,-134.775,-12.9443,-134.775	1/1:10:0,10,0:0:0:10,0:360,0:-32.6546,-3.0103,0,-32.6546,-3.0103,-32.6546	1/1:12:0,12,0:0:0:12,0:399,0:-36.1767,-3.61236,0,-36.1767,-3.61236,-36.1767	1/1:45:0,45,0:0:0:45,0:1582,0:-141.897,-13.5464,0,-141.897,-13.5464,-141.897	1/2:398:1,211,184:1:36:211,184:7188,6396:-1095.75,-517.078,-456.498,-576.057,0,-523.605	1/1:246:0,243,0:0:0:243,0:8404,0:-754.099,-73.1503,0,-754.099,-73.1503,-754.099	1/1:168:0,168,0:0:0:168,0:5832,0:-522.972,-50.573,0,-522.972,-50.573,-522.972	1/1:3:0,3,0:0:0:3,0:106,0:-9.85111,-0.90309,0,-9.85111,-0.90309,-9.85111	1/2:331:0,164,167:0:0:164,167:5689,5814:-932.394,-473.102,-423.733,-459.638,0,-409.366	1/1:92:0,92,0:0:0:92,0:3227,0:-289.223,-27.6948,0,-289.223,-27.6948,-289.223	1/2:334:0,190,143:0:0:190,143:6559,5014:-937.131,-407.961,-350.765,-529.266,0,-486.219	1/2:157:1,89,67:1:36:89,67:3097,2362:-439.543,-189.37,-165.516,-247.526,0,-230.295	1/1:147:0,146,0:0:0:146,0:4961,0:-445.167,-43.9504,0,-445.167,-43.9504,-445.167	1/1:250:0,247,2:0:0:247,2:8595,68:-766.373,-74.3544,0,-760.857,-68.8453,-760.255	1/2:237:0,128,104:0:0:128,104:4421,3600:-650.553,-292.561,-254.029,-358,0,-326.693	1/1:396:0,393,3:0:0:393,3:13524,108:-1207.7,-118.305,0,-1198.89,-109.133,-1197.98	1/2:220:0,132,87:0:0:132,87:4600,3005:-615.624,-244.226,-204.49,-371.492,0,-345.302	1/1:298:0,296,0:0:0:296,0:10328,0:-923.692,-89.1049,0,-923.692,-89.1049,-923.692	1/1:385:0,383,0:0:0:383,0:13242,0:-1185.65,-115.294,0,-1185.65,-115.294,-1185.65	1/2:12:0,3,9:0:0:3,9:100,316:-34.1543,-26.0696,-25.1665,-8.42229,0,-5.71302	1/2:228:0,120,106:0:0:120,106:4149,3719:-638.339,-302.636,-266.512,-335.691,0,-303.782	1/1:140:0,139,0:0:0:139,0:4813,0:-430.714,-41.8432,0,-430.714,-41.8432,-430.714	1/2:27:0,10,17:0:0:1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chr05	26963169	.	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chr05	26973963	.	G	T	61177.8	PASS	AB=0.489522;ABP=8.33455;AC=50;AF=0.265957;AN=188;AO=2754;CIGAR=1X;DP=11876;DPB=11876;DPRA=0.94333;EPP=5974.56;EPPR=19783;GTI=2;LEN=1;MEANALT=1;MQM=53.8123;MQMR=56.1028;NS=94;NUMALT=1;ODDS=1.31767;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97871;QR=323352;RO=9121;RPL=1487;RPP=41.1727;RPPR=337.32;RPR=1267;RUN=1;SAF=1488;SAP=41.8697;SAR=1266;SRF=5154;SRP=338.449;SRR=3967;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:34,23:34:1180:23:824:-57.087,0,-89.3055	0/0:150:150,0:150:5316:0:0:0,-45.1545,-477.82	0/1:111:57,54:57:2013:54:1931:-140.255,0,-147.629	0/0:294:294,0:294:10489:0:0:0,-88.5028,-942.278	0/1:29:14,15:14:492:15:540:-40.0867,0,-35.8584	0/1:38:31,7:31:1097:7:248:-11.1098,0,-87.4358	0/1:170:90,80:90:3207:80:2855:-204.678,0,-237.016	0/0:182:181,1:181:6432:1:36:0,-51.2044,-574.577	0/1:132:74,58:74:2660:58:2042:-142.753,0,-199.019	0/0:279:279,0:279:9920:0:0:0,-83.9874,-890.917	0/0:85:85,0:85:3022:0:0:0,-25.5875,-271.772	0/0:150:150,0:150:5257:0:0:0,-45.1545,-472.846	0/1:160:85,75:85:3020:75:2678:-191.668,0,-223.17	0/1:120:48,72:48:1711:72:2513:-189.312,0,-117.88	0/1:152:75,77:75:2688:77:2743:-200.745,0,-196.042	0/0:115:115,0:115:4049:0:0:0,-34.6184,-363.475	0/1:100:59,41:59:2067:41:1464:-101.65,0,-155.876	0/0:106:106,0:106:3791:0:0:0,-31.9092,-340.955	0/1:58:35,23:35:1228:23:828:-57.2605,0,-93.3072	0/1:173:87,86:87:3062:86:3078:-223.381,0,-223.394	0/1:302:123,179:123:4357:179:6364:-480.267,0,-301.129	0/1:34:10,24:10:360:24:834:-64.9235,0,-22.4928	0/1:113:52,61:52:1844:61:2156:-159.799,0,-131.902	0/0:63:58,5:58:2059:5:165:0,-3.85401,-170.098	0/0:74:74,0:74:2613:0:0:0,-22.2762,-235.151	0/0:297:296,1:296:10440:1:36:0,-85.8325,-933.825	0/0:367:367,0:367:13018:0:0:0,-110.478,-1169.7	0/1:71:36,35:36:1283:35:1226:-88.8222,0,-94.316	0/1:348:172,176:172:6102:176:6294:-459.989,0,-442.954	0/0:85:79,6:79:2828:6:216:0,-5.85068,-234.287	0/0:142:142,0:142:5056:0:0:0,-42.7463,-454.604	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.41802	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0683	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0154	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.3768	0/1:353:193,160:193:6864:160:5682:-401.354,0,-510.537	0/0:78:78,0:78:2734:0:0:0,-23.4803,-246.017	0/0:79:79,0:79:2783:0:0:0,-23.7814,-250.317	0/1:5:2,3:2:72:3:108:-6.96082,0,-5.33157	0/1:165:81,84:81:2846:84:3007:-219.719,0,-206.094	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.326	0/1:90:56,34:56:1998:34:1220:-82.778,0,-152.807	0/1:153:67,86:67:2377:86:3063:-228.79,0,-167.38	0/0:104:104,0:104:3674:0:0:0,-31.3071,-330.382	0/0:82:82,0:82:2922:0:0:0,-24.6845,-263.122	0/1:102:61,41:61:2180:41:1472:-101.777,0,-165.309	0/0:123:123,0:123:4368:0:0:0,-37.0267,-392.366	0/1:149:79,70:79:2814:70:2486:-177.869,0,-208.074	0/0:218:218,0:218:7742:0:0:0,-65.6245,-695.315	0/0:103:102,1:102:3644:1:25:0,-28.5062,-324.956	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:110:65,45:65:2281:45:1595:-110.436,0,-172.226	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.26	0/1:5:1,4:1:36:4:144:-11.7803,0,-2.09312	0/0:216:216,0:216:7618:0:0:0,-65.0225,-684.394	0/1:44:20,24:20:707:24:856:-63.561,0,-50.6448	0/1:4:2,2:2:72:2:72:-5.5854,0,-5.62401	0/1:17:7,10:7:252:10:356:-27.0877,0,-17.8701	0/0:124:124,0:124:4403:0:0:0,-37.3277,-395.752	0/1:127:58,69:58:2064:69:2461:-182.758,0,-146.667	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:305:157,148:157:5575:148:5290:-380.582,0,-408.705	0/1:197:95,102:95:3400:102:3611:-264.641,0,-246.058	0/1:92:34,58:34:1215:58:2042:-155.85,0,-81.887	0/1:96:52,44:52:1856:44:1559:-110.1,0,-138.008	0/0:225:221,4:221:7857:4:144:0,-54.4542,-693.195	0/0:158:158,0:158:5645:0:0:0,-47.5627,-507.365	0/1:46:23,23:23:808:23:815:-59.3713,0,-59.0424	0/1:90:58,32:58:2063:32:1135:-75.1769,0,-158.42	0/1:121:66,55:66:2298:55:1972:-140.454,0,-169.788	0/0:29:29,0:29:1025:0:0:0,-8.72987,-91.5411	0/1:79:48,31:48:1707:31:1078:-73.3997,0,-130.026	0/0:157:157,0:157:5581:0:0:0,-47.2617,-501.08	0/0:191:191,0:191:6768:0:0:0,-57.4967,-608.029	0/0:323:322,1:322:11395:1:36:0,-93.6344,-1020.93	0/1:70:40,30:40:1415:30:1033:-71.9711,0,-106.53	0/0:261:260,1:260:9265:1:36:0,-75.0881,-828.945	0/1:11:6,5:6:216:5:176:-12.812,0,-16.4656	0/0:169:168,1:168:5989:1:36:0,-47.2758,-534.842	0/1:92:37,55:37:1324:55:1955:-148.046,0,-91.6708	0/0:276:276,0:276:9778:0:0:0,-83.0843,-878.589	0/1:154:81,73:81:2845:73:2593:-185.087,0,-209.449	0/1:114:65,49:65:2297:49:1717:-119.372,0,-172.494	0/0:161:161,0:161:5656:0:0:0,-48.4658,-507.383	0/1:236:103,133:103:3600:133:4726:-352.417,0,-252.67	0/1:61:36,25:36:1259:25:885:-61.3606,0,-95.0707	0/0:121:121,0:121:4231:0:0:0,-36.4246,-380.59	0/1:112:72,40:72:2540:40:1431:-94.8798,0,-195.04	0/0:67:67,0:67:2343:0:0:0,-20.169,-210.861	0/1:85:56,29:56:1956:29:1020:-65.8144,0,-149.608	0/1:123:42,81:42:1492:81:2891:-222.484,0,-97.2839	0/0:271:270,0:270:9537:0:0:0,-81.2781,-856.276	0/0:220:220,0:220:7831:0:0:0,-66.2266,-703.531
chr05	27037791	.	T	G	164134	PASS	AB=0.496149;ABP=3.64581;AC=137;AF=0.728723;AN=188;AO=7640;CIGAR=1X;DP=10149;DPB=10149;DPRA=0;EPP=16050.4;EPPR=5119.66;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9507;MQMR=60;NS=94;NUMALT=1;ODDS=1.10168;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273313;QR=89877;RO=2506;RPL=63;RPP=16050.4;RPPR=5119.66;RPR=7577;RUN=1;SAF=7640;SAP=16593.1;SAR=0;SRF=2506;SRP=5444.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:22,27:22:792:27:972:-73.0474,0,-56.8552	1/1:147:0,147:0:0:147:5268:-474.247,-44.2514,0	0/1:154:78,76:78:2796:76:2713:-198.054,0,-205.521	1/1:217:0,217:0:0:217:7733:-695.988,-65.3235,0	0/1:83:39,44:39:1404:44:1558:-115.524,0,-101.674	0/1:67:39,28:39:1404:28:1008:-70.8592,0,-106.49	0/1:146:53,93:53:1904:93:3336:-256.507,0,-127.687	1/1:152:1,151:1:36:151:5401:-482.593,-42.1583,0	0/1:109:52,57:52:1868:57:2021:-149.349,0,-135.587	1/1:92:0,92:0:0:92:3280:-295.42,-27.6948,0	1/1:53:0,53:0:0:53:1905:-171.728,-15.9546,0	1/1:65:1,64:1:36:64:2292:-202.926,-15.9687,0	0/1:45:22,23:22:783:23:828:-61.2978,0,-57.2466	0/1:78:40,38:40:1436:38:1364:-99.5804,0,-106.057	0/1:54:29,25:29:1044:25:896:-64.7047,0,-78.0192	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	0/1:62:33,29:33:1164:29:1027:-73.8873,0,-86.4003	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:175:98,77:98:3524:77:2751:-195.151,0,-264.688	0/1:151:95,56:95:3390:56:2004:-135.178,0,-259.859	0/1:171:119,52:119:4272:52:1853:-115.572,0,-333.181	0/1:119:54,65:54:1944:65:2336:-174.677,0,-139.413	0/1:146:15,131:15:540:131:4663:-375.871,0,-4.98616	1/1:114:2,112:2:72:112:4012:-354.43,-27.4807,0	1/1:412:1,411:1:36:411:14703:-1319.41,-120.426,0	1/1:245:0,245:0:0:245:8753:-787.753,-73.7524,0	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/1:264:121,143:121:4336:143:5125:-380.025,0,-310.943	1/1:178:4,174:4:144:174:6207:-545.402,-40.2697,0	1/1:149:0,149:0:0:149:5325:-479.379,-44.8535,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:19:1,18:1:36:18:644:-54.6841,-2.1213,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:8:0,8:0:0:8:282:-25.7211,-2.40824,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:132:75,57:75:2692:57:2052:-145.215,0,-202.788	1/1:284:1,283:1:36:283:10172:-911.802,-81.8942,0	1/1:66:0,66:0:0:66:2372:-213.72,-19.868,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:133:68,64:68:2440:64:2304:-167.525,0,-179.759	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:149:73,76:73:2628:76:2719:-200.099,0,-191.913	0/1:49:20,29:20:716:29:1044:-79.5243,0,-50.0172	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:160:0,160:0:0:160:5702:-513.293,-48.1648,0	0/1:144:73,71:73:2608:71:2529:-184.494,0,-191.62	1/1:208:1,207:1:36:207:7432:-665.304,-59.016,0	0/1:159:76,83:76:2728:83:2938:-216.79,0,-197.899	1/1:174:0,174:0:0:174:6190:-557.192,-52.3792,0	1/1:201:0,201:0:0:201:7201:-648.142,-60.507,0	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:150:83,67:83:2970:67:2412:-172.181,0,-222.377	1/1:65:0,65:0:0:65:2339:-210.394,-19.567,0	0/1:21:11,10:11:396:10:353:-25.7869,0,-29.6611	1/1:146:0,146:0:0:146:5162:-464.72,-43.9504,0	0/1:59:25,34:25:896:34:1220:-92.346,0,-63.1996	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:21:10,10:10:360:10:360:-26.5001,0,-26.5001	1/1:157:0,157:0:0:157:5629:-506.728,-47.2617,0	0/1:105:53,51:53:1895:51:1806:-131.146,0,-139.16	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:240:141,99:141:5072:99:3556:-248,0,-384.374	0/1:243:134,109:134:4816:109:3904:-278.403,0,-360.443	0/1:90:50,40:50:1792:40:1421:-101.093,0,-134.47	0/1:106:55,51:55:1968:51:1820:-132.172,0,-145.486	1/1:179:1,178:1:36:178:6370:-569.783,-50.2861,0	1/1:178:5,173:5:180:173:6196:-541.183,-37.0313,0	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/1:112:50,62:50:1796:62:2220:-166.349,0,-128.207	0/1:85:39,46:39:1395:46:1647:-122.93,0,-100.261	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	0/1:141:91,50:91:3259:50:1777:-117.65,0,-251.085	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0	1/1:252:0,252:0:0:252:9034:-813.025,-75.8596,0	1/1:149:0,149:0:0:149:5344:-481.092,-44.8535,0	0/1:89:39,50:39:1404:50:1788:-134.41,0,-99.8676	1/1:87:0,87:0:0:87:3116:-280.666,-26.1896,0	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	1/1:99:3,96:3:108:96:3436:-299.378,-19.7268,0	0/1:159:74,85:74:2656:85:3024:-224.526,0,-191.422	1/1:300:1,299:1:36:299:10665:-956.154,-86.7107,0	0/1:86:45,41:45:1592:41:1472:-106.888,0,-117.679	0/1:56:33,23:33:1184:23:824:-57.6256,0,-90.0106	1/1:57:0,57:0:0:57:2039:-183.781,-17.1587,0	0/1:111:46,65:46:1648:65:2336:-177.085,0,-115.194	0/1:22:10,12:10:345:12:432:-32.5985,0,-24.7582	1/1:68:0,68:0:0:68:2424:-218.414,-20.47,0	0/1:66:25,41:25:900:41:1476:-113.268,0,-61.453	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	0/1:128:70,58:70:2516:58:2088:-149.658,0,-188.16	0/1:77:44,33:44:1580:33:1188:-84.0493,0,-119.312	1/1:140:1,139:1:36:139:4973:-444.09,-38.5459,0	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0
chr05	27037896	.	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chr05	27042266	.	T	A	73159.1	PASS	AB=0.496665;ABP=3.70556;AC=51;AF=0.271277;AN=188;AO=3612;CIGAR=1X;DP=15105;DPB=15105;DPRA=1.28608;EPP=7794.34;EPPR=24704.1;GTI=2;LEN=1;MEANALT=1.07937;MQM=59.9956;MQMR=59.9899;NS=94;NUMALT=1;ODDS=5.40404;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129358;QR=411266;RO=11487;RPL=495;RPP=4136.07;RPPR=14993.5;RPR=3117;RUN=1;SAF=489;SAP=4173.99;SAR=3123;SRF=1263;SRP=15182.6;SRR=10224;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:19,29:19:665:29:1027:-78.2928,0,-45.7233	0/0:336:334,1:334:11981:1:36:0,-97.5308,-1074.62	0/1:286:162,123:162:5805:123:4396:-309.658,0,-436.408	0/0:415:413,2:413:14789:2:72:0,-118.091,-1323.91	0/1:146:89,57:89:3185:57:2044:-140.281,0,-242.922	0/1:30:14,16:14:504:16:561:-41.7862,0,-36.6672	0/1:161:96,65:96:3440:65:2324:-160.954,0,-261.347	0/0:271:271,0:271:9702:0:0:0,-81.5791,-873.126	0/1:103:43,60:43:1544:60:2141:-161.95,0,-108.247	0/0:190:190,0:190:6786:0:0:0,-57.1957,-610.811	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:54:27,27:27:953:27:963:-70.7303,0,-69.8277	0/1:97:49,47:49:1752:47:1684:-122.588,0,-128.705	0/1:61:27,34:27:968:34:1224:-92.1042,0,-69.0745	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.354	0/1:84:46,38:46:1652:38:1368:-98.1343,0,-123.682	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/1:38:15,23:15:536:23:828:-63.405,0,-37.1357	0/1:434:233,201:233:8349:201:7196:-517.044,0,-620.766	0/1:198:106,92:106:3804:92:3297:-237.343,0,-282.525	0/1:231:77,154:77:2749:154:5504:-425.948,0,-178.113	0/1:101:56,45:56:2012:45:1612:-114.966,0,-150.949	0/0:152:144,8:144:5164:8:288:0,-19.4892,-438.632	0/0:69:68,1:68:2444:1:36:0,-17.1728,-216.616	0/0:911:908,2:908:32484:2:72:0,-267.46,-2915.71	0/0:317:317,0:317:11347:0:0:0,-95.4265,-1021.1	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/1:747:360,387:360:12886:387:13802:-1017.09,0,-934.683	0/0:173:169,4:169:6072:4:144:0,-38.7646,-533.266	0/0:216:216,0:216:7725:0:0:0,-65.0225,-695.282	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:387:177,210:177:6324:210:7520:-560.342,0,-452.755	0/0:215:213,2:213:7652:2:72:0,-57.8847,-681.875	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:289:167,122:167:5981:122:4377:-307.103,0,-451.396	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:208:103,105:103:3674:105:3764:-276.344,0,-268.246	0/1:87:43,44:43:1536:44:1580:-116.302,0,-112.343	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:271:271,0:271:9648:0:0:0,-81.5791,-868.272	0/1:190:97,93:97:3484:93:3325:-242.271,0,-256.575	0/0:325:323,2:323:11573:2:72:0,-90.998,-1034.6	0/1:166:79,87:79:2828:87:3101:-229.345,0,-204.788	0/0:252:252,0:252:9056:0:0:0,-75.8596,-815.012	0/0:452:452,0:452:16196:0:0:0,-136.066,-1457.31	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.4606	0/1:232:131,101:131:4716:101:3628:-256.885,0,-354.757	0/0:87:86,1:86:3076:1:36:0,-22.5913,-273.47	0/1:18:15,3:15:532:3:108:-4.65663,0,-42.7945	0/0:243:243,0:243:8705:0:0:0,-73.1503,-783.431	0/1:39:15,24:15:532:24:855:-65.5302,0,-36.4729	0/1:20:9,11:9:320:11:388:-29.2334,0,-23.1218	0/1:33:11,22:11:396:22:784:-60.9499,0,-26.0488	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.383	0/1:97:50,47:50:1769:47:1692:-123.367,0,-130.291	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:508:257,251:257:9204:251:8993:-656.423,0,-675.407	0/1:272:130,142:130:4668:142:5079:-375.372,0,-338.4	0/1:123:58,65:58:2046:65:2340:-173.832,0,-147.382	0/1:189:96,93:96:3456:93:3325:-242.572,0,-254.356	0/0:336:326,10:326:11627:10:360:0,-68.4018,-1013.56	0/0:133:132,1:132:4721:1:36:0,-36.4387,-421.45	0/1:43:16,27:16:546:27:972:-74.8536,0,-36.515	0/1:133:66,67:66:2364:67:2412:-177.299,0,-172.981	0/1:195:104,91:104:3720:91:3268:-235.639,0,-275.744	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:92:43,49:43:1525:49:1752:-130.269,0,-109.846	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:232:231,0:231:8224:0:0:0,-69.5379,-739.811	0/0:307:307,0:307:11010:0:0:0,-92.4162,-990.417	0/1:233:106,127:106:3789:127:4556:-340.065,0,-271.067	0/0:206:206,0:206:7362:0:0:0,-62.0122,-662.626	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:194:193,1:193:6925:1:36:0,-54.8015,-619.714	0/1:256:144,112:144:5168:112:4028:-285.643,0,-388.195	0/0:382:379,2:379:13582:2:72:0,-108.216,-1215.32	0/1:88:41,47:41:1461:47:1692:-126.076,0,-105.293	0/1:70:36,34:36:1296:34:1224:-89.3949,0,-95.8718	0/0:109:109,0:109:3901:0:0:0,-32.8123,-351.282	0/1:130:61,69:61:2192:69:2472:-183.597,0,-158.412	0/1:41:28,13:28:1000:13:468:-30.1174,0,-77.9731	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:44:27,17:27:964:17:608:-41.8067,0,-73.8315	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:84:45,39:45:1620:39:1404:-101.373,0,-120.803	0/1:48:18,30:18:629:30:1080:-83.0638,0,-42.4843	0/0:232:232,0:232:8328:0:0:0,-69.839,-749.524	0/0:117:117,0:117:4212:0:0:0,-35.2205,-379.258
chr05	27144909	.	TAC	CAC,CAA	180699	PASS	AB=0.50263,0.493373;ABP=3.29584,4.82359;AC=138,50;AF=0.734043,0.265957;AN=188;AO=6193,2365;CIGAR=1X2M,1X1M1X;DP=8590;DPB=8590;DPRA=0,1.22379;EPP=13424.9,5121.19;EPPR=13.8677;GTI=1;LEN=1,3;MEANALT=1.95745,2.32812;MQM=59.7358,59.3932;MQMR=60;NS=94;NUMALT=2;ODDS=1.58649;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=220619,82790;QR=172;RO=5;RPL=3,2;RPP=13424.9,5121.19;RPPR=13.8677;RPR=6190,2363;RUN=1,1;SAF=0,0;SAP=13450.9,5138.54;SAR=6193,2365;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,7,15:0:0:7,15:252,540:-64.9748,-44.4129,-42.3057,-20.9217,0,-16.4063	1/1:40:0,40,0:0:0:40,0:1432,0:-129.169,-12.0412,0,-129.169,-12.0412,-129.169	1/2:64:0,29,35:0:0:29,35:1044,1218:-184.186,-98.9959,-90.266,-85.544,0,-75.008	1/1:158:0,157,1:0:0:157,1:5593,36:-503.127,-47.2617,0,-500.189,-43.9645,-499.888	1/2:52:0,27,25:0:0:27,25:964,884:-150.915,-72.3415,-64.2137,-78.928,0,-71.4023	1/2:44:0,14,30:0:0:14,30:504,1028:-124.899,-83.778,-79.5636,-41.4755,0,-32.4446	1/2:167:0,81,84:0:0:81,84:2898,2946:-476.047,-239.736,-215.353,-236.354,0,-211.067	1/1:89:0,89,0:0:0:89,0:3170,0:-285.46,-26.7917,0,-285.46,-26.7917,-285.46	1/2:69:0,42,25:0:0:42,25:1478,861:-190.201,-70.006,-57.3628,-120.288,0,-112.762	1/1:102:0,102,0:0:0:102,0:3645,0:-328.223,-30.7051,0,-328.223,-30.7051,-328.223	1/1:128:0,127,1:0:0:127,1:4516,34:-406.252,-38.2308,0,-403.494,-35.1329,-403.193	1/1:112:0,112,0:0:0:112,0:3992,0:-359.449,-33.7154,0,-359.449,-33.7154,-359.449	1/2:65:0,38,27:0:0:38,27:1332,946:-185.701,-77.3136,-65.8744,-108.738,0,-100.61	1/2:149:0,65,83:0:0:65,83:2304,2920:-425.377,-237.687,-218.12,-187.762,0,-162.776	1/2:77:0,50,26:0:0:50,26:1796,924:-221.801,-75.2891,-60.2376,-146.509,0,-138.682	1/1:57:0,57,0:0:0:57,0:2040,0:-183.863,-17.1587,0,-183.863,-17.1587,-183.863	1/2:94:0,46,48:0:0:46,48:1629,1660:-267.595,-134.907,-121.06,-133.038,0,-118.588	1/1:55:0,55,0:0:0:55,0:1964,0:-176.756,-16.5567,0,-176.756,-16.5567,-176.756	1/2:62:0,31,31:0:0:31,31:1089,1084:-177.142,-88.5181,-79.1862,-88.9741,0,-79.6422	1/2:265:0,134,130:0:0:134,130:4804,4567:-763.307,-371.564,-331.226,-391.738,0,-352.604	1/2:86:1,36,49:1:36:36,49:1288,1738:-243.229,-138.517,-130.617,-102.072,0,-90.2591	1/2:87:0,27,60:0:0:27,60:944,2046:-243.045,-166.248,-158.12,-77.1435,0,-59.0817	1/2:83:0,53,30:0:0:53,30:1904,1040:-239.555,-84.2285,-68.274,-155.676,0,-146.645	1/2:130:0,115,13:0:0:115,13:4107,457:-372.072,-37.2568,-2.63838,-334.874,0,-330.96	1/1:62:0,61,1:0:0:61,1:2188,36:-196.807,-18.3628,0,-193.87,-15.0656,-193.569	1/1:230:0,229,0:0:0:229,0:8150,0:-733.201,-68.9359,0,-733.201,-68.9359,-733.201	1/1:135:0,135,0:0:0:135,0:4827,0:-434.566,-40.6391,0,-434.566,-40.6391,-434.566	1/2:49:0,24,25:0:0:24,25:864,896:-143.924,-73.4348,-66.2101,-70.8486,0,-63.3229	1/2:229:0,105,124:0:0:105,124:3742,4351:-659.433,-354.434,-322.826,-305.352,0,-268.025	1/1:61:0,57,4:0:0:57,4:2040,126:-183.542,-17.1587,0,-173.641,-6.94573,-172.437	1/1:140:1,137,1:1:36:137,1:4889,36:-436.597,-38.2854,0,-433.961,-38.2854,-436.597	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:39:0,39,0:0:0:39,0:1381,0:-124.587,-11.7402,0,-124.587,-11.7402,-124.587	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:266:0,139,126:0:0:139,126:4983,4404:-764.625,-358.209,-316.366,-406.45,0,-368.52	1/1:61:0,61,0:0:0:61,0:2192,0:-197.538,-18.3628,0,-197.538,-18.3628,-197.538	1/1:134:0,134,0:0:0:134,0:4749,0:-427.536,-40.338,0,-427.536,-40.338,-427.536	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:92:0,52,40:0:0:52,40:1856,1416:-266.991,-115.686,-100.033,-151.66,0,-139.619	1/1:56:0,56,0:0:0:56,0:1983,0:-178.739,-16.8577,0,-178.739,-16.8577,-178.739	1/2:91:0,29,61:0:0:29,61:1032,2145:-258.547,-174.451,-165.721,-84.1673,0,-65.8045	1/2:102:0,50,52:0:0:50,52:1780,1846:-295.829,-150.758,-135.706,-145.427,0,-129.773	1/1:75:0,75,0:0:0:75,0:2643,0:-238.111,-22.5773,0,-238.111,-22.5773,-238.111	1/1:99:0,98,0:0:0:98,0:3504,0:-315.178,-29.5009,0,-315.178,-29.5009,-315.178	1/2:73:0,41,31:0:0:41,31:1461,1102:-208.98,-89.9177,-77.5755,-119.193,0,-109.861	1/1:140:0,139,1:0:0:139,1:4936,36:-443.969,-41.8432,0,-441.032,-38.5459,-440.731	1/2:83:0,42,41:0:0:42,41:1496,1421:-237.77,-115.832,-103.189,-122.289,0,-109.947	1/1:142:2,140,0:2:72:140,0:5018,0:-444.918,-35.9095,0,-445.52,-42.1442,-451.395	1/1:151:0,151,0:0:0:151,0:5403,0:-486.396,-45.4555,0,-486.396,-45.4555,-486.396	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:93:0,32,61:0:0:32,61:1148,2148:-268.846,-175.205,-165.572,-93.9969,0,-75.634	1/1:34:0,34,0:0:0:34,0:1209,0:-109.114,-10.235,0,-109.114,-10.235,-109.114	1/2:8:0,3,5:0:0:3,5:99,157:-20.9434,-12.9338,-12.0307,-8.33349,0,-6.82834	1/1:116:0,116,0:0:0:116,0:4119,0:-370.76,-34.9195,0,-370.76,-34.9195,-370.76	1/2:60:0,37,23:0:0:37,23:1313,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chr05	27144931	.	CCTT	TCTC,TCTT	184673	PASS	AB=0.514943,0.480669;ABP=12.2902,18.5419;AC=138,50;AF=0.734043,0.265957;AN=188;AO=6394,2319;CIGAR=1X2M1X,1X3M;DP=8750;DPB=8751;DPRA=0,1.14441;EPP=13887.4,5038.65;EPPR=11.6962;GTI=1;LEN=4,1;MEANALT=2,2.31746;MQM=59.7093,59.436;MQMR=60;NS=94;NUMALT=2;ODDS=3.94688;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=2;QA=227174,82669;QR=144;RO=4;RPL=6394,2319;RPP=13887.4,5038.65;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13887.4,5038.65;SAR=6394,2319;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,8,14:0:0:8,14:282,504:-64.4335,-41.4755,-39.0672,-23.3131,0,-19.0986	1/1:42:0,42,0:0:0:42,0:1499,0:-135.198,-12.6433,0,-135.198,-12.6433,-135.198	1/2:65:0,30,35:0:0:30,35:1066,1246:-188.234,-101.368,-92.337,-87.2204,0,-76.6844	1/1:164:0,162,1:0:0:162,1:5711,36:-513.748,-48.7669,0,-510.81,-45.8293,-510.509	1/2:52:0,27,25:0:0:27,25:956,900:-151.639,-73.7846,-65.6568,-78.2115,0,-70.6858	1/2:44:0,14,30:0:0:14,30:504,1076:-129.224,-88.1082,-83.8938,-41.4755,0,-32.4446	1/2:170:0,84,86:0:0:84,86:2992,3062:-493.483,-249.627,-224.34,-244.212,0,-218.324	1/1:89:0,89,0:0:0:89,0:3169,0:-285.239,-26.7917,0,-285.239,-26.7917,-285.239	1/2:69:0,44,25:0:0:44,25:1555,881:-198.587,-72.0638,-58.8184,-126.875,0,-119.35	1/1:109:0,109,0:0:0:109,0:3873,0:-348.723,-32.8123,0,-348.723,-32.8123,-348.723	1/1:130:0,129,1:0:0:129,1:4591,36:-412.978,-38.8329,0,-410.04,-35.5356,-409.739	1/1:115:0,113,0:0:0:113,0:4053,0:-364.669,-34.0164,0,-364.669,-34.0164,-364.669	1/2:65:0,38,27:0:0:38,27:1360,972:-190.556,-79.6533,-68.2142,-111.261,0,-103.133	1/2:154:0,70,84:0:0:70,84:2493,3008:-448.585,-245.4,-224.328,-203.541,0,-178.255	1/2:78:0,50,27:0:0:50,27:1783,968:-224.29,-78.9477,-63.8962,-145.34,0,-137.213	1/1:60:0,59,0:0:0:59,0:2100,0:-188.905,-17.7608,0,-188.905,-17.7608,-188.905	1/2:94:0,48,45:0:0:48,45:1678,1593:-266.282,-129.782,-115.333,-136.55,0,-123.004	1/1:60:0,59,0:0:0:59,0:2099,0:-188.898,-17.7608,0,-188.898,-17.7608,-188.898	1/2:63:0,33,30:0:0:33,30:1148,1080:-181.777,-88.466,-78.532,-93.6645,0,-84.6336	1/2:264:1,136,126:1:36:136,126:4842,4474:-755.835,-361.542,-323.54,-391.651,0,-356.659	1/2:88:1,39,47:1:36:39,47:1383,1670:-245.445,-133.089,-124.286,-109.742,0,-98.5315	1/2:84:0,28,56:0:0:28,56:1005,1978:-243.406,-161.426,-152.997,-82.3374,0,-65.4797	1/2:84:0,55,29:0:0:55,29:1948,1033:-242.691,-84.0115,-67.4548,-159.033,0,-150.304	1/2:130:0,115,13:0:0:115,13:4075,453:-368.759,-36.8279,-2.20949,-331.922,0,-328.008	1/1:66:0,65,1:0:0:65,1:2290,36:-205.972,-19.567,0,-203.035,-16.2697,-202.734	1/1:236:0,234,0:0:0:234,0:8331,0:-749.412,-70.441,0,-749.412,-70.441,-749.412	1/1:137:0,137,0:0:0:137,0:4868,0:-438.26,-41.2411,0,-438.26,-41.2411,-438.26	1/2:51:0,26,25:0:0:26,25:917,900:-148.454,-73.7953,-65.9685,-75.0151,0,-67.4894	1/2:228:0,105,119:0:0:105,119:3740,4233:-649.772,-344.963,-313.355,-304.805,0,-268.982	1/1:65:0,60,4:0:0:60,4:2120,136:-190.723,-18.0618,0,-179.963,-7.32277,-178.759	1/1:145:0,144,1:0:0:144,1:5096,36:-458.423,-43.3483,0,-455.485,-40.0511,-455.184	1/2:5:0,1,4:0:0:1,4:35,144:-14.9552,-12.1095,-11.8085,-3.1976,0,-1.99348	1/1:42:0,42,0:0:0:42,0:1481,0:-133.574,-12.6433,0,-133.574,-12.6433,-133.574	1/1:6:0,6,0:0:0:6,0:215,0:-19.6992,-1.80618,0,-19.6992,-1.80618,-19.6992	1/1:5:0,5,0:0:0:5,0:166,0:-15.2656,-1.50515,0,-15.2656,-1.50515,-15.2656	1/1:8:0,8,0:0:0:8,0:268,0:-24.4452,-2.40824,0,-24.4452,-2.40824,-24.4452	1/2:266:0,145,118:0:0:145,118:5183,4176:-762.378,-339.797,-296.147,-422.583,0,-387.062	1/1:61:0,61,0:0:0:61,0:2182,0:-196.641,-18.3628,0,-196.641,-18.3628,-196.641	1/1:141:0,140,0:0:0:140,0:4990,0:-448.849,-42.1442,0,-448.849,-42.1442,-448.849	1/2:3:0,1,2:0:0:1,2:36,68:-8.79971,-5.85565,-5.55462,-3.29724,0,-2.69518	1/2:89:0,52,36:0:0:52,36:1851,1288:-255.876,-105.023,-89.3691,-150.851,0,-140.014	1/1:58:0,58,0:0:0:58,0:2060,0:-185.666,-17.4597,0,-185.666,-17.4597,-185.666	1/2:91:0,29,62:0:0:29,62:1019,2217:-263.771,-180.847,-172.117,-83.2769,0,-64.6131	1/2:104:0,52,52:0:0:52,52:1859,1863:-303.796,-152.22,-136.566,-151.866,0,-136.212	1/1:78:0,77,0:0:0:77,0:2723,0:-245.011,-23.1793,0,-245.011,-23.1793,-245.011	1/1:103:0,103,0:0:0:103,0:3656,0:-329.231,-31.0061,0,-329.231,-31.0061,-329.231	1/2:73:0,40,33:0:0:40,33:1429,1158:-211.063,-94.5718,-82.5306,-116.845,0,-106.911	1/1:146:0,145,1:0:0:145,1:5120,36:-460.563,-43.6494,0,-457.626,-40.3521,-457.325	1/2:82:0,44,38:0:0:44,38:1572,1356:-239.061,-110.894,-97.649,-128.524,0,-117.084	1/1:144:2,142,0:2:72:142,0:5060,0:-448.698,-36.5116,0,-449.3,-42.7463,-455.175	1/1:158:0,158,0:0:0:158,0:5626,0:-506.432,-47.5627,0,-506.432,-47.5627,-506.432	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:97:0,36,61:0:0:36,61:1286,2165:-281.582,-176.732,-165.895,-105.206,0,-86.8436	1/1:36:0,36,0:0:0:36,0:1261,0:-113.791,-10.8371,0,-113.791,-10.8371,-113.791	1/2:9:0,4,5:0:0:4,5:144,180:-26.7966,-15.0469,-13.8428,-12.1095,0,-10.6043	1/1:120:0,120,0:0:0:120,0:4229,0:-380.653,-36.1236,0,-380.653,-36.1236,-380.653	1/2:60:0,37,23:0: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chr05	27218424	.	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chr05	27218538	.	T	G	41014.3	PASS	AB=0.46089;ABP=75.5368;AC=52;AF=0.276596;AN=188;AO=2532;CIGAR=1X;DP=11341;DPB=11341;DPRA=0.845862;EPP=5501.18;EPPR=19118.5;GTI=4;LEN=1;MEANALT=1.05085;MQM=59.9609;MQMR=59.9842;NS=94;NUMALT=1;ODDS=2.81747;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90470;QR=313425;RO=8803;RPL=2532;RPP=5501.18;RPPR=19118.5;RPR=0;RUN=1;SAF=0;SAP=5501.18;SAR=2532;SRF=0;SRP=19118.5;SRR=8803;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:198:197,0:197:6975:0:0:0,-59.3029,-627.452	0/1:224:143,78:143:5061:78:2789:-184.375,0,-388.758	0/0:312:312,0:312:11144:0:0:0,-93.9214,-1002.85	0/1:66:45,21:45:1608:21:756:-48.4992,0,-125.142	0/1:59:34,25:34:1201:25:900:-63.5602,0,-90.6329	0/1:132:84,48:84:3008:48:1728:-116.069,0,-231.215	0/0:222:222,0:222:7965:0:0:0,-66.8287,-716.868	0/1:51:45,6:45:1589:6:216:-4.43798,0,-127.946	0/0:118:118,0:118:4195:0:0:0,-35.5215,-377.729	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/1:94:46,48:46:1629:48:1720:-126.785,0,-118.6	0/1:75:43,32:43:1548:32:1130:-79.4297,0,-117.036	0/1:87:39,48:39:1400:48:1724:-129.256,0,-100.11	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/1:75:40,35:40:1432:35:1244:-89.6874,0,-106.6	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/1:40:16,24:16:561:24:853:-65.0482,0,-38.7759	0/1:234:105,129:105:3700:129:4603:-343.992,0,-262.673	0/1:159:88,71:88:3164:71:2535:-180.533,0,-237.12	0/1:115:41,74:41:1472:74:2648:-203.948,0,-98.1577	0/1:31:21,10:21:752:10:360:-23.4124,0,-58.6743	0/0:118:116,2:116:4138:2:72:0,-28.6848,-365.765	0/0:113:113,0:113:4034:0:0:0,-34.0164,-363.245	0/0:401:401,0:401:14177:0:0:0,-120.713,-1275.69	0/0:252:252,0:252:8984:0:0:0,-75.8596,-808.538	0/1:43:28,15:28:1004:15:540:-35.9922,0,-77.7316	0/1:330:168,162:168:6002:162:5800:-422.774,0,-440.943	0/0:252:248,4:248:8724:4:144:0,-62.5459,-771.836	0/0:158:158,0:158:5615:0:0:0,-47.5627,-505.471	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:205:110,95:110:3952:95:3416:-245.942,0,-294.159	0/0:277:277,0:277:9854:0:0:0,-83.3853,-886.801	0/0:91:91,0:91:3242:0:0:0,-27.3937,-291.999	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:166:82,83:82:2940:83:2953:-215.974,0,-214.804	0/0:52:52,0:52:1842:0:0:0,-15.6536,-166.056	0/1:142:78,64:78:2747:64:2292:-163.795,0,-204.723	0/1:76:45,31:45:1616:31:1103:-76.7015,0,-122.852	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.915	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/1:228:115,113:115:4136:113:4048:-295.871,0,-303.787	0/0:237:237,0:237:8417:0:0:0,-71.3441,-757.528	0/1:104:59,45:59:2101:45:1605:-113.432,0,-158.051	0/0:181:179,2:179:6341:2:72:0,-47.6497,-563.944	0/1:187:146,41:146:5211:41:1466:-75.6732,0,-412.832	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:170:94,76:94:3293:76:2723:-194.13,0,-245.41	0/0:72:72,0:72:2513:0:0:0,-21.6742,-226.416	0/1:20:9,11:9:309:11:392:-29.5995,0,-22.1201	0/0:181:181,0:181:6473:0:0:0,-54.4864,-582.654	0/1:22:18,4:18:640:4:144:-6.69096,0,-51.3067	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:107:107,0:107:3795:0:0:0,-32.2102,-341.746	0/1:129:61,68:61:2166:68:2427:-179.852,0,-156.37	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	0/1:248:134,113:134:4767:113:4042:-289.253,0,-354.466	0/1:216:118,98:118:4191:98:3501:-250.277,0,-312.347	0/1:88:51,37:51:1813:37:1313:-91.9791,0,-136.959	0/1:131:49,82:49:1749:82:2915:-223.149,0,-118.257	0/0:169:166,3:166:5878:3:108:0,-40.7989,-518.476	0/0:188:187,1:187:6671:1:36:0,-52.9954,-596.866	0/1:31:16,15:16:572:15:539:-39.5143,0,-42.4815	0/1:176:88,88:88:3149:88:3140:-229.845,0,-230.652	0/1:109:46,63:46:1652:63:2248:-169.771,0,-116.156	0/0:30:30,0:30:1057:0:0:0,-9.0309,-95.439	0/1:134:83,51:83:2980:51:1813:-123.111,0,-228.094	0/0:90:90,0:90:3164:0:0:0,-27.0927,-284.981	0/0:177:177,0:177:6321:0:0:0,-53.2823,-568.908	0/0:262:262,0:262:9367:0:0:0,-78.8699,-842.99	0/1:121:71,50:71:2522:50:1785:-124.507,0,-190.804	0/0:116:115,1:115:4113:1:36:0,-31.3212,-366.755	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	0/0:166:166,0:166:5911:0:0:0,-49.971,-532.097	0/1:146:79,67:79:2727:67:2370:-169.587,0,-201.715	0/0:246:246,0:246:8764:0:0:0,-74.0534,-788.734	0/1:144:81,63:81:2889:63:2264:-160.674,0,-216.897	0/1:88:43,45:43:1533:45:1609:-118.608,0,-111.77	0/0:83:82,1:82:2948:1:36:0,-21.3872,-261.955	0/1:171:83,88:83:2942:88:3150:-232.248,0,-213.535	0/1:63:38,25:38:1353:25:883:-60.8226,0,-103.104	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/1:84:45,39:45:1620:39:1400:-101.013,0,-120.803	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.944	0/1:104:48,56:48:1724:56:1999:-148.876,0,-124.138	0/1:70:26,44:26:936:44:1548:-118.539,0,-63.4874	0/0:157:157,0:157:5594:0:0:0,-47.2617,-503.582	0/0:99:98,1:98:3498:1:36:0,-26.2037,-311.429
chr05	27258544	.	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chr05	27272355	.	G	A	314571	PASS	AB=0.497528;ABP=3.39676;AC=137;AF=0.736559;AN=186;AO=11716;CIGAR=1X;DP=15412;DPB=15412;DPRA=83.75;EPP=25435.3;EPPR=8017.92;GTI=3;LEN=1;MEANALT=1.01087;MQM=59.9806;MQMR=59.9556;NS=93;NUMALT=1;ODDS=2.38384;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=415309;QR=131329;RO=3695;RPL=6373;RPP=199.64;RPPR=11.9013;RPR=5343;RUN=1;SAF=6374;SAP=200.404;SAR=5342;SRF=1908;SRP=11.6145;SRR=1787;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:160:0,160:0:0:160:5686:-511.861,-48.1648,0	1/1:140:0,140:0:0:140:4983:-448.618,-42.1442,0	1/1:283:0,283:0:0:283:10050:-904.433,-85.1915,0	1/1:422:0,422:0:0:422:14948:-1345.07,-127.035,0	0/1:101:48,53:48:1724:53:1866:-137.814,0,-125.041	0/1:63:37,26:37:1309:26:932:-65.234,0,-99.1447	0/1:124:61,63:61:2157:63:2247:-165.165,0,-157.064	1/1:349:1,348:1:36:348:12374:-1109.91,-101.461,0	0/1:221:112,109:112:3967:109:3875:-282.416,0,-290.694	1/1:230:0,230:0:0:230:8178:-736.038,-69.2369,0	1/1:94:1,93:1:36:93:3275:-291.372,-24.6985,0	1/1:247:1,246:1:32:246:8692:-779.084,-71.1551,0	0/1:192:92,100:92:3258:100:3527:-259.84,0,-235.644	0/1:136:63,73:63:2252:73:2590:-192.408,0,-162.003	0/1:154:97,57:97:3440:57:2003:-134.182,0,-263.454	1/1:126:0,126:0:0:126:4442:-399.953,-37.9298,0	0/1:75:28,47:28:1000:47:1659:-127.02,0,-67.7381	1/1:85:0,85:0:0:85:2972:-267.712,-25.5876,0	0/1:47:21,26:21:743:26:907:-67.7956,0,-53.0449	0/1:460:227,233:227:8057:233:8313:-609.706,0,-586.673	0/1:354:169,185:169:6021:185:6525:-480.776,0,-435.432	0/1:139:96,43:96:3418:43:1527:-95.8792,0,-265.991	0/1:258:124,134:124:4377:134:4740:-349.096,0,-316.417	1/1:192:8,184:8:284:184:6557:-564.312,-31.8944,0	1/1:163:0,163:0:0:163:5799:-522.026,-49.0679,0	1/1:351:1,350:1:36:350:12382:-1110.47,-102.063,0	1/1:201:0,201:0:0:201:7131:-641.853,-60.507,0	0/1:88:47,41:47:1688:41:1437:-103.134,0,-125.716	0/1:429:213,216:213:7593:216:7714:-565.153,0,-554.268	1/1:219:10,209:10:360:209:7397:-633.036,-33.1813,0	1/1:193:0,193:0:0:193:6859:-617.383,-58.0988,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:229:-20.9298,-2.10721,0	0/1:325:175,150:175:6211:150:5316:-380.74,0,-461.255	1/1:199:0,199:0:0:199:7085:-637.712,-59.905,0	1/1:99:0,99:0:0:99:3504:-315.573,-29.802,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:232:92,140:92:3285:140:4996:-379.948,0,-226.029	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:318:141,177:141:4982:177:6255:-467.32,0,-352.779	0/1:132:72,60:72:2567:60:2102:-149.71,0,-191.544	1/1:123:0,123:0:0:123:4384:-394.734,-37.0267,0	1/1:214:0,214:0:0:214:7540:-678.648,-64.4204,0	0/1:196:112,84:112:3993:84:2999:-211.14,0,-300.557	1/1:268:3,265:3:108:265:9418:-837.509,-70.6009,0	0/1:151:88,63:88:3139:63:2236:-156.049,0,-237.28	1/1:224:0,224:0:0:224:7944:-714.989,-67.4307,0	0/1:148:72,76:72:2559:76:2698:-198.51,0,-186.008	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:291:136,155:136:4857:155:5470:-404.832,0,-349.683	1/1:90:0,90:0:0:90:3230:-290.921,-27.0927,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:276:0,276:0:0:276:9784:-880.509,-83.0843,0	0/1:78:47,31:47:1671:31:1099:-75.7391,0,-127.196	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:137:0,137:0:0:137:4907:-441.78,-41.2411,0	0/1:159:80,79:80:2839:79:2783:-202.846,0,-207.027	0/1:3:2,1:2:63:1:36:-2.69518,0,-5.08006	1/1:181:0,181:0:0:181:6441:-579.648,-54.4864,0	0/1:267:153,114:153:5435:114:4064:-285.574,0,-408.906	0/1:95:39,56:39:1383:56:1994:-151.135,0,-96.1702	0/1:162:79,83:79:2816:83:2901:-212.552,0,-204.909	1/1:341:3,338:3:104:338:11968:-1067.12,-92.9484,0	1/1:278:2,276:2:72:276:9802:-875.297,-76.8496,0	0/1:57:28,29:28:995:29:1003:-73.4181,0,-72.7053	0/1:126:59,67:59:2103:67:2362:-174.906,0,-151.609	0/1:88:50,38:50:1779:38:1329:-93.417,0,-133.902	1/1:22:0,22:0:0:22:769:-69.5286,-6.62266,0	0/1:130:47,83:47:1671:83:2972:-228.571,0,-111.543	1/1:161:0,161:0:0:161:5643:-507.985,-48.4658,0	1/1:367:0,366:0:0:366:13010:-1170.44,-110.177,0	1/1:338:1,337:1:36:337:11987:-1075.09,-98.1499,0	0/1:166:77,89:77:2726:89:3141:-232.945,0,-195.602	1/1:213:1,212:1:36:212:7494:-670.91,-60.5211,0	0/1:11:7,4:7:252:4:135:-9.17118,0,-19.7176	1/1:188:0,188:0:0:188:6660:-599.482,-56.5936,0	0/1:289:130,159:130:4636:159:5630:-419.82,0,-330.407	1/1:345:1,344:1:36:344:12197:-1093.99,-100.257,0	0/1:112:47,65:47:1662:65:2285:-172.197,0,-116.151	0/1:141:65,76:65:2328:76:2683:-199.269,0,-167.335	1/1:110:0,110:0:0:110:3931:-353.981,-33.1133,0	0/1:245:129,116:129:4540:116:4064:-292.201,0,-334.379	0/1:52:26,26:26:932:26:923:-67.7332,0,-68.5453	1/1:129:1,128:1:32:128:4532:-404.851,-35.6336,0	0/1:159:84,75:84:2983:75:2659:-191.693,0,-220.84	1/1:64:0,64:0:0:64:2258:-203.483,-19.2659,0	0/1:136:69,67:69:2420:67:2362:-171.897,0,-177.113	0/1:147:106,41:106:3786:41:1445:-86.0922,0,-296.557	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:232:0,232:0:0:232:8204:-738.38,-69.839,0
chr05	27272360	.	T	C	81593.1	PASS	AB=0.494806;ABP=4.72468;AC=49;AF=0.263441;AN=186;AO=3658;CIGAR=1X;DP=15604;DPB=15604;DPRA=1.18328;EPP=7946.26;EPPR=25919.5;GTI=4;LEN=1;MEANALT=1.08065;MQM=59.9511;MQMR=59.9781;NS=93;NUMALT=1;ODDS=1.05839;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129308;QR=425912;RO=11939;RPL=1907;RPP=17.4567;RPPR=183.801;RPR=1751;RUN=1;SAF=1907;SAP=17.4567;SAR=1751;SRF=6467;SRP=183.077;SRR=5472;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:161:161,0:161:5748:0:0:0,-48.4658,-517.435	0/0:145:145,0:145:5199:0:0:0,-43.6493,-468.047	0/0:288:288,0:288:10281:0:0:0,-86.6966,-925.207	0/0:419:418,0:418:14947:0:0:0,-125.831,-1344.67	0/1:101:56,45:56:2000:45:1596:-113.526,0,-149.87	0/1:63:26,37:26:932:37:1332:-101.217,0,-65.234	0/1:123:64,59:64:2252:59:2089:-151.248,0,-165.912	0/0:363:362,1:362:12957:1:36:0,-105.676,-1162.34	0/1:222:111,111:111:3948:111:3894:-283.827,0,-288.683	0/0:233:233,0:233:8363:0:0:0,-70.14,-752.672	0/0:96:95,1:95:3397:1:32:0,-25.6996,-302.744	0/0:249:248,1:248:8809:1:36:0,-71.3582,-789.202	0/1:191:103,88:103:3682:88:3103:-222.001,0,-274.085	0/1:139:75,64:75:2675:64:2225:-158.669,0,-199.152	0/1:153:57,96:57:2040:96:3405:-260.608,0,-137.814	0/0:122:122,0:122:4346:0:0:0,-36.7257,-391.305	0/1:76:46,30:46:1656:30:1043:-71.2987,0,-126.45	0/0:88:88,0:88:3143:0:0:0,-26.4906,-283.094	0/1:43:23,20:23:828:20:707:-51.0103,0,-61.8998	0/1:462:236,225:236:8447:225:8013:-582.055,0,-621.097	0/1:360:188,172:188:6651:172:5999:-431.636,0,-490.299	0/1:138:41,97:41:1461:97:3441:-268.362,0,-90.2419	0/1:262:136,126:136:4852:126:4474:-323.942,0,-357.963	0/0:194:186,8:186:6628:8:280:0,-32.8605,-571.061	0/0:168:168,0:168:6008:0:0:0,-50.573,-540.823	0/0:370:369,1:369:13172:1:36:0,-107.783,-1181.62	0/0:201:200,0:200:7157:0:0:0,-60.206,-643.865	0/1:89:44,45:44:1567:45:1576:-115.337,0,-114.529	0/1:437:223,213:223:7934:213:7556:-548.471,0,-582.475	0/0:229:219,10:219:7822:10:360:0,-36.1916,-671.263	0/0:198:198,0:198:7019:0:0:0,-59.6039,-631.773	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8427	0/1:323:153,170:153:5455:170:6019:-444.587,0,-393.577	0/0:207:207,0:207:7370:0:0:0,-62.3132,-663.347	0/0:99:99,0:99:3467:0:0:0,-29.802,-312.243	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:234:143,91:143:5110:91:3230:-220.481,0,-389.602	0/0:40:40,0:40:1411:0:0:0,-12.0412,-127.287	0/1:321:179,142:179:6381:142:5023:-355.534,0,-477.75	0/1:134:62,72:62:2206:72:2576:-191.752,0,-158.466	0/0:133:133,0:133:4746:0:0:0,-40.037,-427.296	0/0:216:216,0:216:7689:0:0:0,-65.0225,-692.046	0/1:198:85,113:85:3032:113:4010:-301.484,0,-213.504	0/0:274:271,3:271:9687:3:108:0,-72.407,-861.704	0/1:153:67,86:67:2395:86:3050:-228.671,0,-169.749	0/0:227:227,0:227:8077:0:0:0,-68.3338,-726.948	0/1:146:79,67:79:2811:67:2396:-171.947,0,-209.192	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:303:166,137:166:5951:137:4858:-346.162,0,-444.484	0/0:93:92,1:92:3272:1:32:0,-24.7965,-291.5	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:284:284,0:284:10178:0:0:0,-85.4925,-915.816	0/1:81:33,48:33:1154:48:1693:-128.271,0,-79.7788	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:139:139,0:139:4988:0:0:0,-41.8432,-449.067	0/1:151:77,73:77:2724:73:2597:-188.622,0,-200.046	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:183:183,0:183:6530:0:0:0,-55.0885,-587.782	0/1:261:114,147:114:4066:147:5204:-389.929,0,-287.558	0/1:95:55,38:55:1959:38:1328:-91.5322,0,-148.302	0/1:162:83,79:83:2960:79:2772:-200.952,0,-217.856	0/0:353:350,3:350:12505:3:108:0,-96.1884,-1115.2	0/0:284:282,2:282:10090:2:72:0,-78.6558,-901.194	0/1:58:30,28:30:1080:28:999:-72.7648,0,-80.0535	0/1:127:69,58:69:2416:58:2080:-149.239,0,-178.972	0/1:86:39,47:39:1383:47:1655:-123.348,0,-98.8795	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:132:82,50:82:2948:50:1767:-119.577,0,-225.809	0/0:161:161,0:161:5747:0:0:0,-48.4658,-517.315	0/0:368:368,0:368:13119:0:0:0,-110.779,-1180.38	0/0:341:340,1:340:12164:1:36:0,-99.0529,-1091	0/1:171:94,77:94:3365:77:2678:-189.784,0,-251.588	0/0:219:218,1:218:7743:1:36:0,-62.3273,-693.309	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:193:193,0:193:6879:0:0:0,-58.0988,-619.179	0/1:291:161,130:161:5750:130:4561:-323.061,0,-430.01	0/0:350:348,2:348:12390:2:72:0,-98.5238,-1108.1	0/1:112:65,47:65:2319:47:1676:-117.412,0,-175.254	0/1:142:78,64:78:2779:64:2255:-160.466,0,-207.605	0/0:112:112,0:112:3999:0:0:0,-33.7154,-360.094	0/1:247:122,125:122:4333:125:4411:-322.176,0,-315.79	0/1:50:25,25:25:896:25:871:-63.654,0,-65.9089	0/0:126:126,0:126:4507:0:0:0,-37.9298,-405.798	0/1:157:73,84:73:2600:84:2931:-216.762,0,-186.985	0/0:64:64,0:64:2266:0:0:0,-19.2659,-204.202	0/1:135:67,68:67:2396:68:2394:-175.076,0,-175.258	0/1:149:43,106:43:1536:106:3753:-293.104,0,-93.6796	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:236:235,1:235:8375:1:32:0,-67.8438,-750.558
chr05	27297161	.	G	T	56030.7	PASS	AB=0.489116;ABP=8.25735;AC=48;AF=0.255319;AN=188;AO=2513;CIGAR=1X;DP=10302;DPB=10302;DPRA=1.17095;EPP=5425.23;EPPR=16801.7;GTI=0;LEN=1;MEANALT=1.01724;MQM=59.8667;MQMR=59.968;NS=94;NUMALT=1;ODDS=7.69297;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89422;QR=275041;RO=7788;RPL=1501;RPP=209.634;RPPR=801.242;RPR=1012;RUN=1;SAF=1503;SAP=213.028;SAR=1010;SRF=4753;SRP=825.963;SRR=3035;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.07	0/0:131:131,0:131:4639:0:0:0,-39.4349,-417.674	0/0:133:132,1:132:4682:1:36:0,-36.4387,-417.943	0/0:173:172,1:172:6106:1:36:0,-48.4799,-546.042	0/1:61:40,21:40:1409:21:756:-50.0044,0,-108.742	0/1:60:22,38:22:784:38:1368:-105.356,0,-52.7996	0/1:98:38,60:38:1285:60:2147:-163.994,0,-86.44	0/0:163:163,0:163:5718:0:0:0,-49.0679,-514.743	0/1:182:92,90:92:3265:90:3194:-232.697,0,-239.281	0/0:125:125,0:125:4411:0:0:0,-37.6287,-397.166	0/0:100:100,0:100:3502:0:0:0,-30.103,-315.393	0/0:189:189,0:189:6669:0:0:0,-56.8947,-600.291	0/1:146:74,72:74:2639:72:2564:-187.054,0,-193.806	0/1:114:73,41:73:2556:41:1467:-98.0033,0,-195.971	0/1:145:73,72:73:2538:72:2551:-186.185,0,-185.019	0/0:103:103,0:103:3607:0:0:0,-31.0061,-324.837	0/1:117:55,62:55:1946:62:2207:-163.671,0,-140.194	0/0:119:119,0:119:4192:0:0:0,-35.8226,-377.463	0/1:83:51,32:51:1791:32:1152:-79.0013,0,-136.483	0/1:146:74,72:74:2619:72:2580:-188.499,0,-191.983	0/1:180:86,94:86:3017:94:3364:-248.742,0,-217.575	0/1:50:26,24:26:908:24:849:-61.6748,0,-66.981	0/1:85:48,37:48:1707:37:1313:-92.8807,0,-128.328	0/1:98:86,12:86:2992:12:432:-9.71562,0,-240.009	0/0:101:101,0:101:3584:0:0:0,-30.404,-322.767	0/0:247:246,1:246:8750:1:36:0,-70.7561,-783.893	0/0:226:226,0:226:8061:0:0:0,-68.0328,-725.511	0/1:72:32,40:32:1109:40:1419:-106.32,0,-78.4394	0/1:236:110,126:110:3859:126:4465:-330.975,0,-276.462	0/0:132:124,8:124:4373:8:288:0,-13.4686,-367.478	0/0:113:112,1:112:3930:1:36:0,-30.4181,-349.669	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9347	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:307:147,160:147:5212:160:5709:-421.507,0,-376.803	0/0:101:101,0:101:3525:0:0:0,-30.404,-317.453	0/0:106:106,0:106:3755:0:0:0,-31.9092,-338.15	0/1:7:3,4:3:108:4:129:-9.82045,0,-7.96796	0/1:119:58,61:58:2041:61:2172:-159.815,0,-148.135	0/0:56:56,0:56:1974:0:0:0,-16.8577,-177.931	0/1:165:102,63:102:3598:63:2241:-152.272,0,-274.357	0/1:107:62,45:62:2209:45:1608:-112.8,0,-166.863	0/0:125:125,0:125:4370:0:0:0,-37.6287,-393.476	0/0:107:107,0:107:3827:0:0:0,-32.2102,-344.626	0/1:98:54,44:54:1921:44:1566:-111.73,0,-143.664	0/0:182:182,0:182:6438:0:0:0,-54.7875,-579.513	0/1:98:53,45:53:1871:45:1612:-115.869,0,-139.168	0/0:121:121,0:121:4268:0:0:0,-36.4246,-383.668	0/1:137:64,73:64:2232:73:2578:-191.024,0,-159.899	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:120:64,56:64:2288:56:2000:-144.143,0,-170.058	0/0:39:39,0:39:1375:0:0:0,-11.7402,-123.978	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:106:106,0:106:3731:0:0:0,-31.9092,-335.991	0/1:47:25,22:25:885:22:792:-57.4573,0,-65.8181	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:15:4,11:4:135:11:396:-31.4655,0,-7.96706	0/0:106:106,0:106:3751:0:0:0,-31.9092,-337.79	0/1:163:97,66:97:3428:66:2347:-162.416,0,-259.667	0/1:5:2,3:2:68:3:108:-8.5676,0,-4.95256	0/0:141:141,0:141:5001:0:0:0,-42.4452,-450.241	0/1:149:73,76:73:2607:76:2717:-199.915,0,-190.024	0/1:65:23,42:23:805:42:1504:-116.088,0,-53.2006	0/1:61:38,23:38:1348:23:824:-56.1205,0,-103.257	0/0:79:79,0:79:2787:0:0:0,-23.7814,-251.07	0/0:122:120,2:120:4283:2:72:0,-29.8889,-378.812	0/1:62:26,36:26:919:36:1249:-94.0433,0,-64.3623	0/1:57:24,33:24:821:33:1184:-89.7096,0,-57.0413	0/1:121:65,56:65:2268:56:1986:-142.588,0,-167.918	0/0:33:33,0:33:1115:0:0:0,-9.93399,-100.648	0/1:117:47,70:47:1642:70:2476:-187.873,0,-112.843	0/0:109:107,2:107:3790:2:72:0,-25.9755,-334.453	0/0:216:216,0:216:7668:0:0:0,-65.0225,-690.152	0/0:125:125,0:125:4381:0:0:0,-37.6287,-394.464	0/1:127:71,56:71:2507:56:1963:-138.709,0,-187.65	0/0:144:143,1:143:5022:1:36:0,-39.75,-448.522	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/0:117:117,0:117:4144:0:0:0,-35.2205,-373.143	0/1:141:69,72:69:2456:72:2568:-188.925,0,-178.842	0/0:271:270,1:270:9571:1:36:0,-77.9809,-857.732	0/1:136:60,76:60:2106:76:2724:-204.458,0,-148.866	0/1:136:59,77:59:2089:77:2725:-204.546,0,-147.336	0/0:113:113,0:113:3960:0:0:0,-34.0164,-356.589	0/1:204:108,96:108:3801:96:3416:-246.239,0,-280.879	0/1:57:25,32:25:879:32:1125:-84.324,0,-62.2681	0/0:112:112,0:112:3960:0:0:0,-33.7154,-356.594	0/1:120:64,55:64:2263:55:1976:-141.932,0,-167.748	0/0:102:102,0:102:3597:0:0:0,-30.7051,-323.937	0/1:140:81,59:81:2903:59:2094:-146.584,0,-219.361	0/1:119:46,73:46:1624:73:2545:-193.473,0,-110.553	0/0:140:140,0:140:4999:0:0:0,-42.1442,-450.058	0/0:190:189,1:189:6707:1:36:0,-53.5974,-600.112
chr05	27428758	.	C	G	90685.6	PASS	AB=0.501168;ABP=3.0458;AC=138;AF=0.741935;AN=186;AO=4359;CIGAR=1X;DP=5875;DPB=5875;DPRA=31.9185;EPP=9459.77;EPPR=3268.9;GTI=2;LEN=1;MEANALT=1.13043;MQM=59.992;MQMR=60;NS=93;NUMALT=1;ODDS=0.474623;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155338;QR=53633;RO=1504;RPL=4359;RPP=9468.46;RPPR=3268.9;RPR=0;RUN=1;SAF=1;SAP=9459.77;SAR=4358;SRF=0;SRP=3268.9;SRR=1504;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	0/1:116:57,58:57:2014:58:2062:-150.872,0,-146.551	1/1:70:0,70:0:0:70:2487:-224.084,-21.0721,0	1/1:129:0,128:0:0:128:4588:-412.724,-38.5318,0	0/1:46:21,25:21:756:25:900:-67.4736,0,-54.5198	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:68:38,30:38:1360:30:1076:-76.6828,0,-102.231	1/1:87:3,83:3:108:83:2953:-255.929,-16.1732,0	0/1:53:22,31:22:769:31:1116:-84.7971,0,-53.574	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:64:0,64:0:0:64:2256:-203.3,-19.2659,0	0/1:72:33,39:33:1176:39:1374:-102.283,0,-84.4736	0/1:106:49,57:49:1749:57:2031:-151.153,0,-125.783	0/1:72:37,35:37:1324:35:1260:-92.0313,0,-97.7879	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:89:43,45:43:1520:45:1611:-118.429,0,-110.24	1/1:63:0,62:0:0:62:2219:-199.614,-18.6639,0	0/1:66:47,19:47:1684:19:680:-41.6612,0,-131.979	0/1:113:52,61:52:1857:61:2188:-163.169,0,-133.391	0/1:56:28,28:28:978:28:1004:-73.8182,0,-71.471	0/1:42:21,21:21:756:21:756:-55.724,0,-55.724	0/1:36:21,14:21:752:14:489:-33.4437,0,-57.1105	1/1:71:3,68:3:108:68:2436:-209.42,-11.298,0	1/1:38:0,38:0:0:38:1344:-121.26,-11.4391,0	1/1:155:2,153:2:72:153:5445:-483.344,-39.8229,0	1/1:124:0,123:0:0:123:4400:-395.962,-37.0267,0	0/1:37:20,17:20:716:17:599:-43.1,0,-53.6296	0/1:129:51,77:51:1828:77:2750:-208.851,0,-125.909	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:177:94,83:94:3360:83:2964:-213.711,0,-249.335	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	1/1:62:0,62:0:0:62:2207:-198.895,-18.6639,0	.:.:.:.:.:.:.:.	0/1:88:39,49:39:1369:49:1744:-130.754,0,-97.0159	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	0/1:75:35,40:35:1252:40:1428:-106.24,0,-90.4078	0/1:80:42,38:42:1504:38:1348:-97.5379,0,-111.572	1/1:69:0,69:0:0:69:2456:-221.295,-20.7711,0	1/1:23:0,23:0:0:23:804:-72.6793,-6.92369,0	0/1:68:35,33:35:1245:33:1176:-85.6777,0,-91.8827	1/1:83:0,82:0:0:82:2915:-262.227,-24.6845,0	0/1:56:29,27:29:1040:27:964:-70.2191,0,-77.0567	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	0/1:92:54,38:54:1928:38:1352:-94.2856,0,-146.102	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:54:23,31:23:824:31:1108:-83.7754,0,-58.2277	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	1/1:70:0,70:0:0:70:2478:-223.273,-21.0721,0	0/1:21:9,12:9:324:12:428:-32.5372,0,-23.1842	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:102:50,52:50:1796:52:1835:-134.725,0,-131.217	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:92:0,92:0:0:92:3254:-293.083,-27.6948,0	0/1:102:45,57:45:1616:57:2024:-151.728,0,-115.025	0/1:37:18,19:18:644:19:680:-50.3911,0,-47.1525	0/1:46:23,22:23:820:22:792:-57.6995,0,-60.2165	1/1:90:1,89:1:36:89:3168:-281.748,-23.4944,0	1/1:33:1,32:1:36:32:1140:-99.3109,-6.33572,0	0/1:37:20,17:20:716:17:612:-44.2753,0,-53.6296	0/1:29:12,17:12:428:17:608:-46.3222,0,-30.1289	0/1:89:51,38:51:1832:38:1349:-94.9182,0,-138.369	1/1:12:0,12:0:0:12:426:-38.6777,-3.61236,0	0/1:67:37,30:37:1313:30:1072:-76.6234,0,-98.3007	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:263:0,263:0:0:263:9413:-847.131,-79.1709,0	1/1:98:0,98:0:0:98:3485:-313.861,-29.5009,0	0/1:62:22,39:22:788:39:1398:-107.397,0,-52.5222	1/1:60:2,58:2:72:58:2076:-180.274,-11.2251,0	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	1/1:55:0,55:0:0:55:1948:-175.596,-16.5567,0	0/1:75:37,38:37:1309:38:1344:-98.6713,0,-95.5323	1/1:98:2,96:2:68:96:3417:-301.286,-23.0432,0	0/1:80:32,48:32:1144:48:1685:-127.85,0,-79.1871	0/1:69:35,34:35:1215:34:1212:-88.6153,0,-88.8761	1/1:97:0,97:0:0:97:3467:-312.234,-29.1999,0	0/1:140:77,63:77:2719:63:2236:-159.36,0,-202.806	0/1:38:14,24:14:500:24:860:-66.2827,0,-33.897	1/1:76:0,76:0:0:76:2692:-242.523,-22.8783,0	0/1:53:32,20:32:1152:20:712:-48.3935,0,-87.9768	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	0/1:55:21,34:21:756:34:1204:-92.1088,0,-51.8106	0/1:66:45,21:45:1616:21:737:-46.7826,0,-125.862	1/1:30:0,30:0:0:30:1053:-95.0786,-9.0309,0	1/1:120:0,120:0:0:120:4281:-385.468,-36.1236,0
chr05	27435326	.	G	A	203641	PASS	AB=0.629763;ABP=736.191;AC=136;AF=0.73913;AN=184;AO=9793;CIGAR=1X;DP=11670;DPB=11670;DPRA=128.231;EPP=21259.6;EPPR=1328.23;GTI=6;LEN=1;MEANALT=1.01099;MQM=59.5838;MQMR=39.8715;NS=92;NUMALT=1;ODDS=8.38411;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=343477;QR=67090;RO=1876;RPL=0;RPP=21268.2;RPPR=1328.23;RPR=9793;RUN=1;SAF=9792;SAP=21259.6;SAR=1;SRF=1876;SRP=4076.69;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1762:-158.788,-15.6536,0	0/1:83:12,71:12:428:71:2524:-202.351,0,-12.8814	1/1:98:0,98:0:0:98:3466:-312.087,-29.5009,0	1/1:412:0,412:0:0:412:14424:-1296.76,-124.024,0	0/1:76:15,61:15:540:61:2155:-171.308,0,-24.7584	0/1:61:16,45:16:561:45:1584:-124.488,0,-30.9226	0/1:193:64,129:64:2296:129:4564:-352.769,0,-141.249	1/1:250:0,250:0:0:250:8787:-789.113,-75.2575,0	0/1:103:45,58:45:1604:58:2002:-149.423,0,-107.911	1/1:141:0,141:0:0:141:4911:-442.116,-42.4452,0	1/1:48:0,48:0:0:48:1696:-152.896,-14.4494,0	1/1:82:0,82:0:0:82:2922:-263.071,-24.6845,0	0/1:96:52,44:52:1872:44:1568:-112.509,0,-133.29	0/1:41:19,22:19:676:22:761:-56.4646,0,-47.2813	0/1:87:48,39:48:1728:39:1364:-96.8307,0,-123.936	1/1:62:0,62:0:0:62:2204:-198.57,-18.6639,0	0/1:40:15,25:15:536:25:884:-67.8013,0,-34.1655	1/1:73:0,73:0:0:73:2573:-231.62,-21.9752,0	0/1:33:16,17:16:561:17:608:-45.0821,0,-39.2404	0/1:367:84,283:84:3024:283:9810:-772.32,0,-154.779	0/1:186:67,119:67:2392:119:4153:-317.908,0,-153.353	0/1:100:35,65:35:1256:65:2257:-173.248,0,-66.6847	0/1:139:56,83:56:2004:83:2948:-223.676,0,-134.149	1/1:177:0,177:0:0:177:6161:-554.412,-53.2823,0	1/1:117:0,117:0:0:117:4137:-372.442,-35.2205,0	1/1:481:2,479:2:72:479:16838:-1508.72,-138.475,0	1/1:318:0,318:0:0:318:11202:-1007.94,-95.7275,0	0/1:48:23,25:23:819:25:880:-65.0683,0,-56.8962	0/1:409:165,244:165:5913:244:8546:-645.996,0,-330.142	1/1:138:0,138:0:0:138:4888:-439.39,-41.5421,0	1/1:133:0,133:0:0:133:4597:-413.779,-40.037,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:12:0,12:0:0:12:416:-37.7716,-3.61236,0	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:356:-32.3247,-3.0103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:263:145,118:145:5204:118:4165:-295.795,0,-320.741	1/1:288:0,288:0:0:288:10121:-910.52,-86.6966,0	1/1:69:0,69:0:0:69:2415:-217.39,-20.7711,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.5027	0/1:185:54,131:54:1932:131:4536:-352.716,0,-113.292	1/1:23:0,23:0:0:23:816:-73.7511,-6.92369,0	0/1:170:57,113:57:2036:113:3984:-307.535,0,-124.24	0/1:61:18,43:18:648:43:1528:-119.367,0,-38.8177	1/1:77:0,77:0:0:77:2728:-245.735,-23.1793,0	1/1:172:0,172:0:0:172:6009:-540.848,-51.7772,0	0/1:139:34,105:34:1216:105:3664:-287.614,0,-64.4525	1/1:266:1,265:1:36:265:9361:-838.846,-76.5713,0	0/1:124:43,81:43:1529:81:2819:-216.585,0,-96.9978	1/1:224:0,224:0:0:224:7816:-703.419,-67.4307,0	0/1:202:42,160:42:1497:160:5619:-444.779,0,-54.303	0/1:6:1,5:1:36:5:168:-13.6447,0,-1.69652	0/1:80:16,64:16:576:64:2211:-175.167,0,-26.7233	1/1:199:2,197:2:72:197:6905:-615.501,-54.1013,0	0/1:21:8,13:8:288:13:445:-33.9969,0,-19.2481	1/1:223:0,223:0:0:223:7793:-701.393,-67.1297,0	0/1:77:18,59:18:644:59:2049:-161.477,0,-32.8297	0/1:8:2,6:2:72:6:208:-16.6508,0,-3.39538	1/1:11:0,11:0:0:11:384:-34.8947,-3.31133,0	1/1:111:0,111:0:0:111:3939:-354.42,-33.4143,0	0/1:100:51,49:51:1824:49:1732:-126.05,0,-130.127	.:.:.:.:.:.:.:.	1/1:337:0,337:0:0:337:11792:-1060.26,-101.447,0	0/1:156:68,88:68:2435:88:3073:-229.785,0,-166.118	0/1:56:26,30:26:921:30:1057:-78.5813,0,-64.1821	0/1:125:51,74:51:1798:74:2604:-196.96,0,-118.88	1/1:254:3,251:3:108:251:8786:-780.884,-66.6541,0	1/1:98:2,96:2:72:96:3404:-299.922,-22.8458,0	0/1:22:11,11:11:396:11:396:-29.3601,0,-28.4912	0/1:98:20,78:20:720:78:2736:-216.614,0,-32.4968	0/1:73:27,46:27:972:46:1644:-126.265,0,-51.5929	1/1:17:0,17:0:0:17:608:-55.0157,-5.11751,0	0/1:123:48,75:48:1709:75:2637:-200.448,0,-113.141	1/1:47:0,47:0:0:47:1652:-148.887,-14.1484,0	1/1:159:1,158:1:36:158:5496:-491.025,-44.2655,0	1/1:309:0,309:0:0:309:10688:-961.561,-93.0183,0	0/1:100:14,85:14:504:85:2977:-237.882,0,-14.0375	1/1:116:5,111:5:180:111:3889:-334.003,-18.8071,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.39932	1/1:131:0,131:0:0:131:4582:-412.509,-39.4349,0	0/1:147:62,85:62:2198:85:2954:-221.727,0,-148.79	1/1:320:0,320:0:0:320:11180:-1005.8,-96.3296,0	0/1:89:28,61:28:989:61:2172:-168.941,0,-59.9788	0/1:72:38,34:38:1349:34:1191:-85.8064,0,-97.1985	1/1:106:0,106:0:0:106:3756:-338.219,-31.9092,0	0/1:147:70,77:70:2504:77:2736:-202.178,0,-174.861	0/1:50:19,31:19:680:31:1096:-83.8479,0,-43.3371	1/1:96:0,96:0:0:96:3392:-305.463,-28.8989,0	0/1:87:50,37:50:1792:37:1305:-90.7584,0,-130.775	1/1:31:0,31:0:0:31:1104:-99.5814,-9.33193,0	0/1:62:31,31:31:1112:31:1104:-80.9843,0,-78.4845	0/1:100:68,32:68:2435:32:1136:-72.4165,0,-182.797	1/1:238:3,235:3:108:235:8211:-729.843,-62.8119,0	1/1:122:1,121:1:36:121:4288:-382.586,-33.223,0
chr05	27435359	.	A	G	30654.1	PASS	AB=0.316642;ABP=1770.03;AC=40;AF=0.212766;AN=188;AO=1975;CIGAR=1X;DP=17517;DPB=17517;DPRA=0.919058;EPP=4291.67;EPPR=33736.8;GTI=12;LEN=1;MEANALT=1.05455;MQM=54.3119;MQMR=59.7363;NS=94;NUMALT=1;ODDS=1.15362;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70061;QR=549746;RO=15539;RPL=398;RPP=1531.33;RPPR=2655.82;RPR=1577;RUN=1;SAF=398;SAP=1531.33;SAR=1577;SRF=9947;SRP=2653.39;SRR=5592;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.032	0/1:170:124,46:124:4400:46:1644:-97.0735,0,-344.946	0/0:200:200,0:200:7079:0:0:0,-60.206,-637.122	0/0:544:544,0:544:19224:0:0:0,-163.76,-1727.82	0/0:93:91,2:91:3224:2:72:0,-21.1591,-283.515	0/1:92:79,13:79:2803:13:464:-14.0831,0,-224.816	0/0:188:181,7:181:6406:7:252:0,-33.5647,-553.558	0/0:391:390,1:390:13719:1:36:0,-114.104,-1229.04	0/1:179:122,56:122:4292:56:1983:-124.8,0,-332.519	0/0:226:226,0:226:7984:0:0:0,-68.0328,-718.552	0/0:124:124,0:124:4399:0:0:0,-37.3277,-396.001	0/0:162:161,1:161:5723:1:27:0,-46.0671,-512.334	0/1:122:71,51:71:2528:51:1811:-126.545,0,-191.043	0/1:171:85,85:85:3031:85:3018:-220.356,0,-221.525	0/1:126:74,52:74:2622:52:1851:-128.939,0,-198.266	0/0:134:133,1:133:4699:1:36:0,-36.7397,-419.452	0/1:176:82,94:82:2932:94:3299:-244.148,0,-211.119	0/0:147:147,0:147:5234:0:0:0,-44.2514,-471.022	0/1:59:42,17:42:1486:17:599:-36.4773,0,-116.236	0/0:333:316,17:316:11214:17:604:0,-45.5524,-954.352	0/1:267:202,64:202:7139:64:2256:-122.865,0,-562.081	0/1:111:73,38:73:2569:38:1345:-72.1476,0,-198.009	0/1:138:104,34:104:3677:34:1216:-68.2044,0,-289.579	0/0:272:271,1:271:9584:1:36:0,-78.2819,-858.701	0/0:155:155,0:155:5480:0:0:0,-46.6596,-493.271	0/0:695:694,1:694:24603:1:36:0,-206.161,-2210.48	0/0:451:451,0:451:15952:0:0:0,-135.765,-1435.24	0/1:59:43,16:43:1527:16:553:-32.3332,0,-119.962	0/1:466:277,189:277:9822:189:6746:-389.842,0,-743.44	0/0:273:268,5:268:9498:5:180:0,-65.6291,-837.57	0/0:376:376,0:376:13377:0:0:0,-113.187,-1203.57	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.2798	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:439:197,242:197:6998:242:8644:-578.778,0,-497.666	0/0:437:437,0:437:15520:0:0:0,-131.55,-1396.24	0/0:160:160,0:160:5671:0:0:0,-48.1648,-510.329	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:191:164,27:164:5797:27:955:-28.7681,0,-464.323	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.26	0/1:161:144,17:144:5130:17:608:-6.58619,0,-413.297	0/1:129:82,47:82:2923:47:1660:-110.855,0,-224.429	0/0:147:147,0:147:5227:0:0:0,-44.2514,-470.555	0/0:218:218,0:218:7687:0:0:0,-65.6245,-691.781	0/1:197:162,35:162:5743:35:1235:-52.1505,0,-457.106	0/0:359:359,0:359:12689:0:0:0,-108.07,-1141.71	0/1:136:111,25:111:3918:25:873:-37.9445,0,-311.835	0/0:351:351,0:351:12468:0:0:0,-105.662,-1121.88	0/1:252:205,47:205:7209:47:1675:-56.5061,0,-572.76	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:125:113,12:113:3988:12:432:-1.59245,0,-321.482	0/0:232:230,2:230:8116:2:72:0,-64.0353,-723.392	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.2159	0/0:323:323,0:323:11376:0:0:0,-97.2327,-1023.65	0/0:86:79,7:79:2786:7:235:0,-4.4125,-229.477	0/1:8:6,2:6:204:2:68:-3.24772,0,-16.2851	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/0:186:186,0:186:6608:0:0:0,-55.9916,-594.511	0/1:169:111,58:111:3955:58:2050:-133.897,0,-305.249	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:417:417,0:417:14763:0:0:0,-125.53,-1327.45	0/1:213:161,52:161:5705:52:1844:-102.118,0,-449.349	0/1:104:79,25:79:2813:25:877:-47.9381,0,-222.101	0/1:125:109,16:109:3871:16:576:-13.765,0,-310.936	0/0:387:387,0:387:13666:0:0:0,-116.499,-1229.69	0/0:223:223,0:223:7901:0:0:0,-67.1297,-711.122	0/1:45:34,11:34:1211:11:388:-21.711,0,-95.7492	0/1:127:109,18:109:3804:18:633:-19.0643,0,-303.735	0/1:201:102,99:102:3631:99:3520:-242.044,0,-266.481	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.399	0/1:129:113,16:113:3958:16:563:-12.1663,0,-317.48	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.352	0/0:384:384,0:384:13558:0:0:0,-115.596,-1219.88	0/0:395:395,0:395:13924:0:0:0,-118.907,-1251.89	0/0:132:122,10:122:4335:10:360:0,-6.99166,-357.462	0/0:217:216,1:216:7596:1:36:0,-61.7252,-679.966	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:214:214,0:214:7500:0:0:0,-64.4204,-675.026	0/1:123:107,16:107:3752:16:572:-14.7867,0,-300.643	0/0:426:425,1:425:14960:1:21:0,-126.139,-1343.81	0/1:190:114,76:114:4049:76:2691:-185.24,0,-307.389	0/1:120:75,45:75:2663:45:1597:-107.895,0,-203.779	0/0:203:201,2:201:7100:2:72:0,-54.2724,-632.208	0/1:261:158,103:158:5572:103:3654:-250.497,0,-422.993	0/1:74:47,27:47:1658:27:960:-64.4401,0,-127.158	0/0:181:181,0:181:6408:0:0:0,-54.4864,-576.776	0/1:110:69,41:69:2456:41:1441:-96.8705,0,-187.365	0/0:110:110,0:110:3906:0:0:0,-33.1133,-351.646	0/1:165:113,52:113:3978:52:1837:-115.939,0,-308.518	0/1:112:62,50:62:2201:50:1776:-126.408,0,-164.609	0/0:308:308,0:308:10808:0:0:0,-92.7172,-972.325	0/0:214:214,0:214:7556:0:0:0,-64.4204,-680.073
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chr05	27570350	.	G	A	42609.7	PASS	AB=0.489242;ABP=8.19633;AC=50;AF=0.268817;AN=186;AO=2555;CIGAR=1X;DP=10670;DPB=10670;DPRA=1.09414;EPP=5525.1;EPPR=17446.9;GTI=5;LEN=1;MEANALT=1.03509;MQM=59.5785;MQMR=59.9431;NS=93;NUMALT=1;ODDS=1.28677;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91451;QR=289600;RO=8113;RPL=3;RPP=5525.1;RPPR=17446.9;RPR=2552;RUN=1;SAF=2555;SAP=5551.12;SAR=0;SRF=8113;SRP=17620.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/1:169:96,73:96:3431:73:2624:-185.508,0,-258.091	0/0:130:130,0:130:4660:0:0:0,-39.1339,-419.553	0/0:194:191,3:191:6805:3:93:0,-49.7231,-603.399	0/1:83:39,44:39:1388:44:1567:-116.309,0,-100.233	0/1:61:33,28:33:1184:28:1004:-72.2911,0,-88.5055	0/1:125:71,54:71:2516:54:1935:-136.42,0,-189.028	0/0:230:230,0:230:8178:0:0:0,-69.2369,-735.851	0/1:117:71,46:71:2536:46:1648:-113.334,0,-193.271	0/0:139:139,0:139:4924:0:0:0,-41.8432,-443.314	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.123	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/1:88:43,45:43:1532:45:1620:-119.575,0,-111.682	0/1:82:39,43:39:1378:43:1548:-114.924,0,-99.6327	0/1:110:62,48:62:2220:48:1716:-121.592,0,-166.951	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.717	0/1:90:40,50:40:1428:50:1792:-134.453,0,-101.725	0/0:87:87,0:87:3100:0:0:0,-26.1896,-279.218	0/1:47:25,22:25:892:22:792:-57.4564,0,-66.4513	0/1:228:102,126:102:3648:126:4499:-336.411,0,-259.889	0/1:153:69,83:69:2459:83:2972:-221.574,0,-175.448	0/1:108:35,73:35:1243:73:2616:-202.927,0,-79.6626	0/1:117:52,65:52:1864:65:2332:-174.908,0,-132.782	0/0:209:195,14:195:6984:14:504:0,-17.5366,-583.243	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/0:324:324,0:324:11578:0:0:0,-97.5337,-1041.85	0/0:325:325,0:325:11584:0:0:0,-97.8347,-1042.43	0/1:65:32,33:32:1148:33:1184:-87.2886,0,-84.0583	0/1:302:165,137:165:5882:137:4908:-350.463,0,-438.581	0/0:139:135,4:135:4843:4:144:0,-28.5343,-422.713	0/0:161:161,0:161:5762:0:0:0,-48.4658,-518.692	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:266:131,135:131:4688:135:4848:-356.353,0,-342.007	0/0:266:265,1:265:9467:1:36:0,-76.4757,-848.382	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.485	.:.:.:.:.:.:.:.	0/1:95:36,59:36:1292:59:2108:-161.257,0,-87.9859	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:128:77,51:77:2747:51:1828:-126.269,0,-208.94	0/1:114:67,47:67:2378:47:1688:-117.887,0,-179.958	0/0:91:91,0:91:3250:0:0:0,-27.3937,-292.712	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.804	0/1:130:65,65:65:2298:65:2332:-170.97,0,-167.902	0/0:193:193,0:193:6867:0:0:0,-58.0988,-618.101	0/1:149:81,68:81:2867:68:2424:-173.551,0,-213.413	0/0:178:178,0:178:6341:0:0:0,-53.5833,-570.783	0/1:196:120,76:120:4280:76:2728:-186.731,0,-326.35	0/1:10:7,3:7:252:3:100:-6.32014,0,-20.0187	0/1:184:95,89:95:3400:89:3183:-231.288,0,-250.825	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/0:130:130,0:130:4640:0:0:0,-39.1339,-417.758	0/1:23:19,4:19:680:4:144:-6.38993,0,-54.6055	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:23:15,8:15:531:8:284:-18.9797,0,-41.1982	0/0:100:100,0:100:3559:0:0:0,-30.103,-320.519	0/1:144:57,87:57:2027:87:3120:-237.652,0,-139.347	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:214:214,0:214:7626:0:0:0,-64.4204,-686.379	0/1:293:153,140:153:5475:140:5006:-362.477,0,-404.675	0/1:93:59,34:59:2107:34:1224:-82.3321,0,-161.903	0/1:96:47,48:47:1688:48:1712:-125.396,0,-123.249	0/0:188:188,0:188:6699:0:0:0,-56.5936,-602.971	0/0:106:106,0:106:3774:0:0:0,-31.9092,-339.858	0/1:24:14,10:14:500:10:360:-25.5196,0,-37.981	0/1:101:64,37:64:2285:37:1297:-86.09,0,-175.506	0/1:80:43,37:43:1540:37:1324:-95.3797,0,-114.806	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:63:29,34:29:1036:34:1212:-90.4129,0,-74.589	0/0:112:112,0:112:4007:0:0:0,-33.7154,-360.819	0/0:126:126,0:126:4506:0:0:0,-37.9298,-405.685	0/0:232:231,1:231:8242:1:36:0,-66.2407,-738.195	0/1:120:53,67:53:1896:67:2389:-179.118,0,-134.794	0/0:143:141,2:141:5043:2:72:0,-36.2106,-447.168	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:156:155,1:155:5560:1:36:0,-43.3624,-496.924	0/1:122:53,69:53:1904:69:2462:-185.069,0,-134.912	0/0:235:235,0:235:8390:0:0:0,-70.742,-755.1	0/1:129:66,63:66:2346:63:2254:-163.088,0,-172.51	0/1:83:43,40:43:1540:40:1432:-104.186,0,-113.908	0/0:119:119,0:119:4251:0:0:0,-35.8226,-382.769	0/1:190:105,85:105:3751:85:3035:-216.169,0,-280.578	0/1:53:25,28:25:892:28:1008:-74.8751,0,-64.6451	0/0:104:104,0:104:3715:0:0:0,-31.3071,-334.552	0/1:80:31,49:31:1108:49:1747:-133.411,0,-75.9486	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:96:57,39:57:2048:39:1400:-97.3819,0,-155.693	0/1:111:32,79:32:1143:79:2836:-222.045,0,-69.7644	0/0:122:121,1:121:4344:1:36:0,-33.1274,-387.536	0/0:142:141,1:141:5029:1:36:0,-39.148,-449.156
chr05	27570485	.	C	T	43995.5	PASS	AB=0.510228;ABP=6.83052;AC=51;AF=0.277174;AN=184;AO=2166;CIGAR=1X;DP=8409;DPB=8409;DPRA=1.02805;EPP=2518.41;EPPR=8047.5;GTI=1;LEN=1;MEANALT=1.01887;MQM=59.9898;MQMR=60;NS=92;NUMALT=1;ODDS=4.84152;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77442;QR=221998;RO=6240;RPL=1875;RPP=2518.41;RPPR=8047.5;RPR=291;RUN=1;SAF=2166;SAP=4706.42;SAR=0;SRF=6240;SRP=13553;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/1:99:42,57:42:1508:57:2044:-154.43,0,-106.213	0/0:123:123,0:123:4394:0:0:0,-37.0267,-395.633	0/0:206:205,1:205:7267:1:36:0,-58.4139,-650.49	0/1:76:33,43:33:1154:43:1548:-116.735,0,-81.2865	0/1:27:15,12:15:532:12:432:-31.0934,0,-40.0853	0/1:118:71,47:71:2527:47:1680:-115.966,0,-192.16	0/0:135:135,0:135:4800:0:0:0,-40.639,-432.157	0/1:128:42,86:42:1479:86:3058:-236.893,0,-94.8719	0/0:94:94,0:94:3339:0:0:0,-28.2968,-300.729	0/0:99:99,0:99:3515:0:0:0,-29.802,-316.559	0/0:97:97,0:97:3440:0:0:0,-29.1999,-309.813	0/1:90:43,47:43:1544:47:1679:-124.304,0,-112.16	0/1:81:39,42:39:1400:42:1490:-110.01,0,-101.916	0/1:78:37,41:37:1323:41:1464:-108.576,0,-95.891	0/0:68:68,0:68:2404:0:0:0,-20.47,-216.615	0/1:41:14,27:14:489:27:957:-74.1016,0,-31.9967	0/0:46:46,0:46:1601:0:0:0,-13.8474,-144.375	0/1:41:17,24:17:599:24:864:-65.7403,0,-41.8959	0/1:192:103,89:103:3653:89:3192:-229.705,0,-271.177	0/1:165:66,99:66:2344:99:3552:-270.218,0,-161.55	0/1:106:37,69:37:1320:69:2484:-191.904,0,-87.1928	0/1:118:57,61:57:2036:61:2181:-161.033,0,-147.991	0/1:74:66,8:66:2355:8:273:-2.62396,0,-189.932	0/0:90:90,0:90:3195:0:0:0,-27.0927,-287.775	0/0:189:189,0:189:6758:0:0:0,-56.8947,-608.293	0/0:119:119,0:119:4218:0:0:0,-35.8226,-379.801	0/1:39:19,20:19:684:20:707:-52.2144,0,-50.1502	0/1:202:109,93:109:3904:93:3331:-239.199,0,-290.745	0/0:102:97,5:97:3464:5:176:0,-14.52,-295.788	0/0:67:67,0:67:2382:0:0:0,-20.169,-214.637	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:176:83,93:83:2988:93:3310:-245.135,0,-216.17	0/0:116:116,0:116:4142:0:0:0,-34.9195,-372.963	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	.:.:.:.:.:.:.:.	0/1:230:128,102:128:4584:102:3647:-259.197,0,-343.488	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:201:103,98:103:3638:98:3518:-256.322,0,-267.118	0/1:71:35,36:35:1239:36:1292:-95.2106,0,-90.4405	0/0:80:80,0:80:2858:0:0:0,-24.0824,-257.457	0/0:91:90,0:90:3220:0:0:0,-27.0927,-289.663	0/1:110:58,52:58:2076:52:1863:-134.835,0,-153.997	0/0:127:126,0:126:4491:0:0:0,-37.9298,-404.001	0/1:86:42,44:42:1495:44:1561:-114.891,0,-108.955	0/0:80:80,0:80:2847:0:0:0,-24.0824,-256.468	0/1:109:54,55:54:1928:55:1976:-145.302,0,-140.984	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:146:71,75:71:2535:75:2696:-198.933,0,-184.45	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:111:111,0:111:3930:0:0:0,-33.4143,-353.895	0/1:53:24,29:24:844:29:1044:-78.3202,0,-60.3243	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.662	0/1:76:32,44:32:1136:44:1584:-119.973,0,-79.6706	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:171:171,0:171:6089:0:0:0,-51.4761,-548.114	0/1:141:81,60:81:2887:60:2152:-151.502,0,-217.621	0/1:42:17,25:17:608:25:883:-67.1442,0,-42.4088	0/1:59:31,28:31:1112:28:968:-69.6666,0,-82.6306	0/0:145:144,1:144:5121:1:36:0,-40.0511,-457.436	0/0:122:121,1:121:4310:1:36:0,-33.1274,-384.479	0/1:40:18,22:18:648:22:788:-59.2036,0,-46.6107	0/1:48:18,30:18:632:30:1072:-82.343,0,-42.7573	0/1:29:18,11:18:630:11:396:-27.2529,0,-48.2947	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:101:60,41:60:2139:41:1459:-101.2,0,-162.373	0/0:110:108,1:108:3833:1:36:0,-29.5738,-341.569	0/0:175:175,0:175:6209:0:0:0,-52.6802,-558.912	0/0:184:184,0:184:6562:0:0:0,-55.3895,-590.664	0/1:146:69,77:69:2459:77:2749:-203.701,0,-177.614	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.757	.:.:.:.:.:.:.:.	0/0:74:74,0:74:2638:0:0:0,-22.2762,-237.666	0/1:125:54,71:54:1918:71:2543:-191.491,0,-135.267	0/0:237:237,0:237:8430:0:0:0,-71.3441,-758.707	0/1:60:24,36:24:860:36:1274:-96.8997,0,-59.66	0/1:60:33,27:33:1164:27:963:-68.9241,0,-87.0024	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/1:141:68,73:68:2417:73:2608:-192.523,0,-175.34	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/0:87:87,0:87:3060:0:0:0,-26.1896,-275.628	0/1:85:38,47:38:1312:47:1673:-125.269,0,-92.7862	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/1:82:50,32:50:1765:32:1152:-79.3057,0,-134.447	0/1:77:22,55:22:792:55:1971:-154.485,0,-48.4264	0/0:197:197,0:197:6991:0:0:0,-59.3029,-629.259	0/0:133:133,0:133:4714:0:0:0,-40.037,-424.421
chr05	27595169	.	GTAT	ATAC,ATAT	234975	PASS	AB=0.493323,0.504047;ABP=4.92429,3.71333;AC=138,50;AF=0.734043,0.265957;AN=188;AO=8547,2531;CIGAR=1X2M1X,1X3M;DP=11101;DPB=11101.2;DPRA=0,1.28803;EPP=18545.2,5472.98;EPPR=0;GTI=2;LEN=4,1;MEANALT=1.91489,2.26562;MQM=59.995,60;MQMR=0;NS=94;NUMALT=2;ODDS=3.67455;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=299757,90193;QR=0;RO=0;RPL=0,0;RPP=18562.6,5499.01;RPPR=0;RPR=8547,2531;RUN=1,1;SAF=2,3;SAP=18545.2,5472.98;SAR=8545,2528;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35,0:0:0:35,0:1215,0:-109.652,-10.5361,0,-109.652,-10.5361,-109.652	1/1:181:0,181,0:0:0:181,0:6321,0:-568.994,-54.4864,0,-568.994,-54.4864,-568.994	1/1:195:0,195,0:0:0:195,0:6836,0:-615.325,-58.7009,0,-615.325,-58.7009,-615.325	1/1:354:0,353,0:0:0:353,0:12340,0:-1110.22,-106.264,0,-1110.22,-106.264,-1110.22	1/2:120:0,54,66:0:0:54,66:1916,2363:-349.165,-193.06,-176.804,-156.461,0,-136.593	1/2:71:0,32,39:0:0:32,39:1115,1391:-204.419,-113.748,-104.115,-91.0226,0,-79.2824	1/2:100:0,66,33:0:0:66,33:2311,1176:-283.992,-95.9607,-76.0927,-188.131,0,-178.197	1/1:211:0,210,1:0:0:210,1:7340,36:-660.309,-63.2163,0,-657.371,-59.9191,-657.07	1/2:117:0,50,67:0:0:50,67:1747,2385:-336.846,-194.737,-179.686,-142.461,0,-122.292	1/1:148:0,148,0:0:0:148,0:5236,0:-471.384,-44.5524,0,-471.384,-44.5524,-471.384	1/1:51:0,51,0:0:0:51,0:1805,0:-162.731,-15.3525,0,-162.731,-15.3525,-162.731	1/1:59:0,59,0:0:0:59,0:2076,0:-187.11,-17.7608,0,-187.11,-17.7608,-187.11	1/2:53:0,26,26:0:0:26,26:929,936:-152.116,-76.3729,-68.5461,-75.7423,0,-67.9155	1/2:52:0,24,28:0:0:24,28:853,1003:-151.666,-82.1568,-74.9321,-69.8658,0,-61.437	1/2:52:0,29,23:0:0:29,23:1035,828:-152.296,-67.9204,-59.1906,-84.7343,0,-77.8107	1/1:33:0,33,0:0:0:33,0:1134,0:-102.362,-9.93399,0,-102.362,-9.93399,-102.362	1/2:46:0,22,24:0:0:22,24:748,860:-131.159,-70.4971,-63.8745,-61.011,0,-53.7862	1/1:38:0,38,0:0:0:38,0:1350,0:-121.8,-11.4391,0,-121.8,-11.4391,-121.8	1/2:46:0,27,19:0:0:27,19:965,680:-134.491,-55.8096,-47.6818,-79.039,0,-73.3194	1/2:253:0,128,125:0:0:128,125:4464,4456:-726.636,-363.584,-325.052,-363.405,0,-325.776	1/2:230:0,131,98:0:0:131,98:4535,3503:-654.24,-285.699,-246.264,-368.613,0,-339.112	1/2:91:0,31,60:0:0:31,60:1085,2131:-262.27,-173.996,-164.664,-88.6256,0,-70.5638	1/2:99:0,48,51:0:0:48,51:1642,1828:-282.714,-149.448,-134.999,-133.615,0,-118.262	1/1:151:0,146,5:0:0:146,5:5155,180:-463.737,-43.9504,0,-449.05,-28.9035,-447.545	1/1:107:0,107,0:0:0:107,0:3752,0:-337.884,-32.2102,0,-337.884,-32.2102,-337.884	1/1:444:0,442,2:0:0:442,2:15556,68:-1399.44,-133.055,0,-1393.92,-127.2,-1393.32	1/1:310:0,309,1:0:0:309,1:10880,36:-978.763,-93.0183,0,-975.826,-89.721,-975.524	1/2:27:0,14,13:0:0:14,13:497,468:-79.0396,-38.5463,-34.3318,-40.8507,0,-36.9373	1/2:357:0,165,190:0:0:165,190:5806,6742:-1022.01,-549.373,-499.703,-472.702,0,-415.506	1/1:165:0,160,5:0:0:160,5:5613,180:-504.942,-48.1648,0,-490.254,-33.1179,-488.749	1/1:142:0,142,0:0:0:142,0:4936,0:-444.401,-42.7463,0,-444.401,-42.7463,-444.401	2/2:13:0,1,12:0:0:1,12:35,424:-38.1463,-35.2988,-34.9978,-3.61236,-0.414761,0	1/1:37:0,37,0:0:0:37,0:1304,0:-117.66,-11.1381,0,-117.66,-11.1381,-117.66	1/1:9:0,9,0:0:0:9,0:318,0:-28.9604,-2.70927,0,-28.9604,-2.70927,-28.9604	1/1:17:0,17,0:0:0:17,0:567,0:-51.3448,-5.11751,0,-51.3448,-5.11751,-51.3448	1/1:26:0,26,0:0:0:26,0:917,0:-82.8467,-7.82678,0,-82.8467,-7.82678,-82.8467	1/2:145:0,67,78:0:0:67,78:2371,2782:-420.264,-227.14,-206.971,-193.48,0,-169.999	1/1:299:0,297,1:0:0:297,1:10312,36:-927.678,-89.4059,0,-924.74,-86.4685,-924.439	1/1:69:0,69,0:0:0:69,0:2367,0:-213.29,-20.7711,0,-213.29,-20.7711,-213.29	1/2:6:0,5,1:0:0:5,1:179,36:-17.893,-3.29724,-1.79209,-14.9552,0,-14.6542	1/2:228:0,117,111:0:0:117,111:4129,3957:-659.133,-322.907,-287.687,-336.58,0,-303.166	1/1:34:0,34,0:0:0:34,0:1216,0:-109.746,-10.235,0,-109.746,-10.235,-109.746	1/2:147:0,79,68:0:0:79,68:2784,2431:-425.241,-198.575,-174.794,-227.021,0,-206.551	1/2:76:0,42,34:0:0:42,34:1476,1194:-217.666,-97.5284,-84.8852,-120.489,0,-110.254	1/1:50:0,49,1:0:0:49,1:1687,36:-151.752,-14.7505,0,-148.815,-11.4532,-148.514	1/1:157:0,156,0:0:0:156,0:5495,0:-494.333,-46.9607,0,-494.333,-46.9607,-494.333	1/2:243:0,127,116:0:0:127,116:4480,4121:-700.946,-336.156,-297.925,-365.143,0,-330.224	1/1:259:0,258,1:0:0:258,1:9046,36:-813.775,-77.6657,0,-810.838,-74.3685,-810.537	1/2:119:0,62,55:0:0:62,55:2185,1958:-337.584,-159.684,-141.02,-177.999,0,-161.442	1/1:192:0,191,0:0:0:191,0:6693,0:-602.221,-57.4967,0,-602.221,-57.4967,-602.221	1/2:203:0,97,104:0:0:97,104:3403,3701:-578.712,-301.775,-272.575,-277.076,0,-245.769	1/2:19:0,5,14:0:0:5,14:179,491:-54.906,-40.3067,-38.8015,-14.9552,0,-10.7408	1/2:219:0,99,120:0:0:99,120:3521,4284:-636.559,-349.615,-319.813,-287.3,0,-251.177	1/1:14:0,14,0:0:0:14,0:499,0:-45.2458,-4.21442,0,-45.2458,-4.21442,-45.2458	1/2:21:0,7,14:0:0:7,14:252,504:-62.0456,-41.4837,-39.3765,-20.9217,0,-16.7073	1/1:186:0,186,0:0:0:186,0:6492,0:-584.38,-55.9916,0,-584.38,-55.9916,-584.38	1/2:78:0,44,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chr05	27670668	.	G	C	45676.7	PASS	AB=0.511866;ABP=7.90601;AC=45;AF=0.244565;AN=184;AO=2070;CIGAR=1X;DP=8549;DPB=8549;DPRA=1.08646;EPP=4489.28;EPPR=14045.9;GTI=0;LEN=1;MEANALT=1.03571;MQM=59.999;MQMR=59.9862;NS=92;NUMALT=1;ODDS=5.3174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72739;QR=228768;RO=6471;RPL=1235;RPP=170.854;RPPR=400.97;RPR=835;RUN=1;SAF=1236;SAP=172.536;SAR=834;SRF=3779;SRP=399.509;SRR=2692;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:151:151,0:151:5375:0:0:0,-45.4555,-483.882	0/0:108:108,0:108:3829:0:0:0,-32.5112,-344.808	0/0:217:217,0:217:7666:0:0:0,-65.3235,-689.983	0/1:31:18,13:18:644:13:464:-32.7656,0,-48.9587	0/1:29:18,11:18:614:11:392:-26.8902,0,-46.8496	0/1:153:64,89:64:2270:89:3105:-233.616,0,-157.314	0/0:122:119,3:119:4171:3:108:0,-26.6505,-365.501	0/1:38:17,21:17:612:21:752:-56.5671,0,-43.9743	0/0:160:157,0:157:5510:0:0:0,-47.2617,-495.433	0/0:109:109,0:109:3865:0:0:0,-32.8123,-348.047	0/0:138:138,0:138:4877:0:0:0,-41.5421,-439.085	0/1:112:49,63:49:1729:63:2202:-164.727,0,-122.177	0/1:86:42,44:42:1495:44:1548:-113.72,0,-108.955	0/1:106:60,46:60:2138:46:1621:-114.267,0,-160.777	0/0:83:83,0:83:2912:0:0:0,-24.9855,-262.314	0/1:77:35,42:35:1252:42:1452:-107.789,0,-89.8058	0/0:67:67,0:67:2364:0:0:0,-20.169,-213.02	0/1:64:40,24:40:1427:24:823:-55.1157,0,-109.461	0/1:129:76,53:76:2687:53:1879:-130.555,0,-203.24	0/1:177:85,92:85:3004:92:3190:-234.04,0,-217.309	0/1:63:11,52:11:392:52:1847:-147.544,0,-16.6552	0/1:49:27,22:27:949:22:788:-56.4943,0,-70.9723	0/0:63:60,3:60:2098:3:108:0,-8.88972,-179.011	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:207:205,1:205:7300:1:36:0,-58.7737,-653.455	0/0:182:182,0:182:6449:0:0:0,-54.7875,-580.501	0/1:49:22,27:22:773:27:952:-71.2442,0,-55.139	0/1:240:134,106:134:4753:106:3774:-267.612,0,-355.681	0/0:138:134,4:134:4764:4:135:0,-29.0596,-416.436	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:280:145,135:145:5114:135:4731:-341.661,0,-376.117	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/0:91:91,0:91:3221:0:0:0,-27.3937,-290.111	.:.:.:.:.:.:.:.	0/1:145:71,74:71:2472:74:2563:-187.266,0,-179.083	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/1:85:36,49:36:1292:49:1721:-129.583,0,-90.9962	0/1:120:56,64:56:1978:64:2235:-165.289,0,-142.167	0/0:106:106,0:106:3736:0:0:0,-31.9092,-336.441	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.613	0/1:73:40,33:40:1399:33:1171:-83.7215,0,-104.228	0/0:122:121,1:121:4235:1:32:0,-33.5263,-378.132	0/1:71:39,32:39:1365:32:1112:-79.0111,0,-101.773	0/0:142:141,1:141:5003:1:32:0,-39.5469,-447.217	0/1:104:62,42:62:2216:42:1500:-103.987,0,-168.398	0/0:12:11,1:11:374:1:36:0,-0.0140849,-30.3882	0/1:55:32,23:32:1136:23:824:-57.9267,0,-85.9922	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:16:3,13:3:108:13:468:-37.6432,0,-5.25869	0/0:127:127,0:127:4454:0:0:0,-38.2308,-401.034	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:118:58,60:58:2040:60:2122:-155.726,0,-148.348	.:.:.:.:.:.:.:.	0/0:182:182,0:182:6461:0:0:0,-54.7875,-581.579	0/1:173:82,91:82:2868:91:3203:-236.415,0,-206.278	0/1:84:37,47:37:1303:47:1657:-124.129,0,-92.2841	0/1:53:18,35:18:648:35:1243:-96.2193,0,-42.6973	0/0:162:161,0:161:5653:0:0:0,-48.4658,-508.537	0/0:91:91,0:91:3238:0:0:0,-27.3937,-291.642	0/1:58:41,17:41:1456:17:599:-36.7784,0,-113.876	0/1:67:35,32:35:1222:32:1128:-81.6573,0,-90.113	0/1:96:55,41:55:1926:41:1428:-99.9141,0,-144.717	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/1:58:28,30:28:992:30:1061:-78.3396,0,-72.1347	0/0:138:136,2:136:4814:2:72:0,-34.7054,-426.578	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.367	0/0:158:157,0:157:5591:0:0:0,-47.2617,-502.956	0/1:32:16,16:16:572:16:576:-42.542,0,-42.1805	0/0:168:167,1:167:5927:1:36:0,-46.9748,-529.941	0/1:9:1,8:1:36:8:270:-21.9184,0,-0.889005	0/0:113:110,3:110:3882:3:108:0,-23.9412,-339.501	0/1:80:34,46:34:1206:46:1580:-118.399,0,-84.7621	0/0:143:143,0:143:5070:0:0:0,-43.0473,-456.446	0/1:110:55,55:55:1893:55:1913:-139.331,0,-137.531	0/1:72:38,34:38:1355:34:1207:-87.2611,0,-100.576	0/0:85:84,0:84:2930:0:0:0,-25.2865,-263.574	0/1:192:89,103:89:3169:103:3627:-268.839,0,-227.625	0/1:48:18,29:18:626:29:1032:-78.6854,0,-42.1557	0/0:92:92,0:92:3264:0:0:0,-27.6948,-293.98	0/1:91:48,43:48:1670:43:1514:-109.158,0,-123.189	0/0:69:69,0:69:2418:0:0:0,-20.7711,-217.874	0/1:135:57,78:57:1979:78:2737:-205.932,0,-137.74	0/1:135:43,92:43:1507:92:3201:-247.674,0,-95.2806	0/0:143:142,1:142:5013:1:36:0,-39.449,-447.722	0/0:158:158,0:158:5591:0:0:0,-47.5627,-503.315
chr05	27692292	.	AAA	CAA,CAG	303216	PASS	AB=0.465211,0.532605;ABP=70.3957,62.2004;AC=138,50;AF=0.734043,0.265957;AN=188;AO=8443,3434;CIGAR=1X2M,1X1M1X;DP=11899;DPB=11899;DPRA=0,2.06517;EPP=168.025,7364.61;EPPR=3.44459;GTI=1;LEN=1,3;MEANALT=1.80851,2.25;MQM=56.5209,59.8995;MQMR=60;NS=94;NUMALT=2;ODDS=0.135588;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=301134,121411;QR=152;RO=5;RPL=3821,11;RPP=168.025,7364.61;RPPR=3.44459;RPR=4622,3423;RUN=1,1;SAF=8443,3434;SAP=18336.8,7459.85;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37,0:0:0:37,0:1317,0:-118.702,-11.1381,0,-118.702,-11.1381,-118.702	1/1:16:0,16,0:0:0:16,0:572,0:-51.5741,-4.81648,0,-51.5741,-4.81648,-51.5741	1/1:74:0,74,0:0:0:74,0:2616,0:-234.836,-22.2762,0,-234.836,-22.2762,-234.836	1/1:65:0,65,0:0:0:65,0:2320,0:-208.929,-19.567,0,-208.929,-19.567,-208.929	1/2:44:0,24,20:0:0:24,20:864,718:-129.42,-58.9278,-51.703,-70.8511,0,-64.8305	1/2:14:0,6,8:0:0:6,8:216,286:-41.2826,-23.6772,-21.8711,-17.9639,0,-15.5557	1/2:27:0,12,15:0:0:12,15:432,530:-78.7683,-43.5163,-39.904,-35.6088,0,-31.0934	1/1:35:0,35,0:0:0:35,0:1233,0:-110.808,-10.5361,0,-110.808,-10.5361,-110.808	1/2:45:0,21,24:0:0:21,24:747,850:-130.393,-69.5759,-63.2542,-61.1719,0,-53.9472	1/1:14:0,14,0:0:0:14,0:491,0:-44.5197,-4.21442,0,-44.5197,-4.21442,-44.5197	1/1:120:0,120,0:0:0:120,0:4299,0:-387.075,-36.1236,0,-387.075,-36.1236,-387.075	1/1:22:0,22,0:0:0:22,0:792,0:-71.5319,-6.62266,0,-71.5319,-6.62266,-71.5319	1/2:17:0,10,7:0:0:10,7:356,240:-48.8176,-19.8264,-16.8161,-29.3392,0,-27.232	1/2:26:0,12,14:0:0:12,14:423,495:-74.4654,-40.0372,-36.4248,-34.7786,0,-30.5642	1/2:16:0,12,4:0:0:12,4:428,142:-46.8163,-11.9251,-8.31273,-35.2464,0,-34.0423	1/1:29:0,29,0:0:0:29,0:1036,0:-93.5506,-8.72987,0,-93.5506,-8.72987,-93.5506	1/2:13:0,8,5:0:0:8,5:288,180:-38.5165,-15.0469,-12.6387,-23.8292,0,-22.3241	1/1:12:0,12,0:0:0:12,0:428,0:-38.7491,-3.61236,0,-38.7491,-3.61236,-38.7491	1/2:42:0,13,29:0:0:13,29:464,1029:-121.975,-84.1913,-80.2779,-38.1395,0,-29.4097	1/2:80:0,35,45:0:0:35,45:1260,1567:-230.578,-127.763,-117.227,-103.169,0,-89.6231	1/2:44:0,26,18:0:0:26,18:928,633:-127.258,-51.8783,-44.0515,-75.7327,0,-70.3141	1/2:85:0,20,65:0:0:20,65:720,2323:-248.359,-189.763,-183.743,-58.9546,0,-39.3877	1/2:54:0,20,34:0:0:20,34:716,1203:-156.73,-98.3395,-92.3189,-58.7471,0,-48.5121	1/2:22:0,18,4:0:0:18,4:648,127:-63.4367,-10.5391,-5.12059,-53.2227,0,-52.0185	1/1:77:0,77,0:0:0:77,0:2752,0:-247.839,-23.1793,0,-247.839,-23.1793,-247.839	1/1:95:0,95,0:0:0:95,0:3384,0:-303.6,-28.5979,0,-303.6,-28.5979,-303.6	1/1:88:0,87,1:0:0:87,1:3097,36:-278.555,-26.1896,0,-275.618,-22.8934,-275.317	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/2:135:0,67,66:0:0:67,66:2381,2334:-383.666,-190.129,-169.96,-193.57,0,-173.702	1/1:59:0,54,5:0:0:54,5:1944,180:-174.824,-16.2556,0,-160.137,-1.20871,-158.631	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:563:0,246,315:0:0:246,315:8756,11222:-1627.87,-914.689,-840.635,-713.173,0,-618.349	1/1:460:0,460,0:0:0:460,0:16410,0:-1476.13,-138.474,0,-1476.13,-138.474,-1476.13	1/1:759:0,757,1:0:0:757,1:26977,36:-2422.45,-227.88,0,-2419.52,-224.897,-2419.22	1/1:1214:4,1205,4:4:116:1205,4:42890,144:-3839.35,-353.537,0,-3828.81,-350.966,-3836.84	1/1:656:0,656,0:0:0:656,0:23420,0:-2103.52,-197.476,0,-2103.52,-197.476,-2103.52	1/2:23:0,9,14:0:0:9,14:324,504:-67.8713,-41.4837,-38.7744,-26.7471,0,-22.5327	1/1:66:0,66,0:0:0:66,0:2368,0:-213.377,-19.868,0,-213.377,-19.868,-213.377	1/1:104:0,104,0:0:0:104,0:3697,0:-331.982,-31.3071,0,-331.982,-31.3071,-331.982	1/2:455:0,212,243:0:0:212,243:7558,8538:-1311.3,-695.275,-631.457,-616.376,0,-543.226	1/2:55:0,24,31:0:0:24,31:856,1106:-160.28,-90.5179,-83.2932,-70.1188,0,-60.7868	1/1:66:0,66,0:0:0:66,0:2360,0:-212.621,-19.868,0,-212.621,-19.868,-212.621	1/2:115:0,44,69:0:0:44,69:1580,2444:-327.991,-199.155,-185.91,-128.904,0,-108.133	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/1:10:0,10,0:0:0:10,0:360,0:-32.7336,-3.0103,0,-32.7336,-3.0103,-32.7336	1/1:60:0,60,0:0:0:60,0:2160,0:-194.21,-18.0618,0,-194.21,-18.0618,-194.21	1/2:42:0,15,27:0:0:15,27:540,932:-119.975,-76.0616,-71.5462,-44.2674,0,-36.1396	1/1:92:0,89,3:0:0:89,3:3184,100:-286.397,-26.7917,0,-278.304,-18.3649,-277.401	1/2:48:0,34,14:0:0:34,14:1205,499:-139.128,-41.0312,-30.7961,-98.4521,0,-94.2377	1/1:34:0,34,0:0:0:34,0:1199,0:-108.204,-10.235,0,-108.204,-10.235,-108.204	1/2:50:0,24,26:0:0:24,26:860,901:-143.415,-73.5752,-66.3505,-70.1921,0,-62.3653	1/2:550:0,255,293:0:0:255,293:9088,10311:-1580.06,-839.379,-762.616,-740.718,0,-652.517	1/2:66:0,22,44:0:0:22,44:788,1554:-191.071,-126.906,-120.283,-64.5212,0,-51.2759	1/1:32:0,32,0:0:0:32,0:1128,0:-101.564,-9.63296,0,-101.564,-9.63296,-101.564	1/2:441:1,198,242:1:36:198,242:7057,8547:-1267.03,-693.092,-636.425,-571.292,0,-501.38	1/1:47:0,47,0:0:0:47,0:1674,0:-150.904,-14.1484,0,-150.904,-14.1484,-150.904	1/2:13:0,7,6:0:0:7,6:248,214:-38.0032,-17.8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chr05	27791557	.	G	A	97725.8	PASS	AB=0.506267;ABP=3.6363;AC=151;AF=0.820652;AN=184;AO=4463;CIGAR=1X;DP=5386;DPB=5386;DPRA=5.90769;EPP=9676.93;EPPR=1992.09;GTI=1;LEN=1;MEANALT=1.03297;MQM=56.1905;MQMR=59.5446;NS=92;NUMALT=1;ODDS=5.40655;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159951;QR=32741;RO=920;RPL=4459;RPP=9659.58;RPPR=1992.09;RPR=4;RUN=1;SAF=4461;SAP=9676.93;SAR=2;SRF=918;SRP=1983.43;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:10,11:10:360:11:392:-29.2823,0,-26.4211	0/1:35:16,19:16:558:19:680:-50.9622,0,-40.0057	0/1:130:52,78:52:1847:78:2804:-213.34,0,-127.374	1/1:235:1,234:1:36:234:8357:-747.739,-67.1438,0	1/1:8:0,8:0:0:8:281:-25.6189,-2.40824,0	1/1:11:0,11:0:0:11:396:-35.9595,-3.31133,0	1/1:86:0,86:0:0:86:3096:-278.365,-25.8886,0	0/1:72:34,38:34:1202:38:1368:-101.677,0,-86.8101	1/1:35:0,35:0:0:35:1260:-113.644,-10.5361,0	1/1:119:0,119:0:0:119:4256:-382.882,-35.8226,0	1/1:40:0,40:0:0:40:1431:-128.99,-12.0412,0	0/1:75:39,36:39:1367:36:1287:-93.5029,0,-100.605	0/1:43:25,18:25:896:18:640:-44.9566,0,-68.0161	1/1:33:0,33:0:0:33:1171:-105.621,-9.93399,0	1/1:53:0,53:0:0:53:1904:-171.332,-15.9546,0	1/1:42:0,42:0:0:42:1512:-136.276,-12.6433,0	1/1:41:0,41:0:0:41:1476:-133.065,-12.3422,0	1/1:21:0,21:0:0:21:752:-67.9686,-6.32163,0	1/1:26:0,26:0:0:26:928:-83.7961,-7.82678,0	1/1:27:0,26:0:0:26:932:-83.7699,-7.82678,0	1/1:132:0,132:0:0:132:4732:-425.726,-39.736,0	0/1:18:12,6:12:432:6:216:-14.3578,0,-33.8003	1/1:13:0,13:0:0:13:468:-42.4298,-3.91339,0	1/1:16:0,16:0:0:16:576:-52.1502,-4.81648,0	1/1:26:0,26:0:0:26:932:-84.101,-7.82678,0	0/1:124:66,58:66:2338:58:2084:-149.096,0,-173.331	1/1:110:0,110:0:0:110:3939:-354.381,-33.1133,0	1/1:32:0,32:0:0:32:1152:-103.833,-9.63296,0	0/1:195:85,110:85:3051:110:3940:-295.804,0,-216.088	1/1:60:2,58:2:72:58:2080:-180.541,-11.2251,0	1/1:35:0,35:0:0:35:1260:-113.495,-10.5361,0	0/1:6:4,2:4:144:2:72:-5.02729,0,-11.5074	1/1:8:0,8:0:0:8:288:-26.2549,-2.40824,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-9.96224,-0.90309,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	1/1:143:0,143:0:0:143:5127:-461.072,-43.0473,0	1/1:21:0,21:0:0:21:756:-68.3385,-6.32163,0	0/1:23:10,13:10:360:13:464:-35.1515,0,-25.8191	.:.:.:.:.:.:.:.	0/1:121:64,57:64:2288:57:2044:-147.711,0,-169.751	0/1:22:7,15:7:248:15:540:-42.2906,0,-16.0415	1/1:84:1,83:1:36:83:2969:-264.331,-22.4654,0	1/1:67:0,67:0:0:67:2408:-216.78,-20.169,0	1/1:60:0,60:0:0:60:2160:-194.523,-18.0618,0	0/1:22:9,13:9:320:13:464:-35.4028,0,-22.5197	1/1:34:0,34:0:0:34:1209:-109.056,-10.235,0	1/1:97:0,97:0:0:97:3488:-313.897,-29.1999,0	1/1:54:0,54:0:0:54:1940:-174.754,-16.2556,0	0/1:111:47,64:47:1684:64:2276:-171.503,0,-118.348	1/1:44:0,44:0:0:44:1580:-142.388,-13.2453,0	1/1:6:0,6:0:0:6:216:-19.7762,-1.80618,0	0/1:67:20,47:20:716:47:1688:-131.966,0,-44.5956	1/1:26:0,26:0:0:26:932:-84.1334,-7.82678,0	1/1:5:0,5:0:0:5:180:-16.5442,-1.50515,0	0/1:114:55,59:55:1946:59:2120:-156.652,0,-141.016	0/1:33:14,19:14:504:19:684:-51.9161,0,-35.7641	0/1:7:4,3:4:140:3:108:-7.96069,0,-10.8374	1/1:8:0,8:0:0:8:288:-26.2485,-2.40824,0	1/1:26:0,26:0:0:26:928:-83.8037,-7.82678,0	0/1:60:33,27:33:1184:27:964:-68.9586,0,-88.7358	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:194:0,194:0:0:194:6961:-624.205,-58.3998,0	1/1:90:0,90:0:0:90:3232:-290.883,-27.0927,0	1/1:27:0,27:0:0:27:957:-86.405,-8.12781,0	1/1:50:0,50:0:0:50:1792:-161.444,-15.0515,0	1/1:74:0,74:0:0:74:2656:-238.958,-22.2762,0	0/1:50:34,16:34:1211:16:572:-36.725,0,-94.1742	1/1:30:0,30:0:0:30:1063:-95.8573,-9.0309,0	1/1:39:0,39:0:0:39:1400:-126.242,-11.7402,0	0/1:40:23,16:23:809:16:576:-40.0356,0,-60.8164	1/1:9:0,9:0:0:9:324:-29.4846,-2.70927,0	1/1:55:1,54:1:36:54:1919:-169.311,-12.9584,0	1/1:77:0,77:0:0:77:2764:-248.87,-23.1793,0	1/1:53:0,53:0:0:53:1904:-171.528,-15.9546,0	1/1:187:0,187:0:0:187:6681:-598.538,-56.2926,0	0/1:19:12,7:12:408:7:252:-17.2996,0,-31.3245	0/1:85:47,38:47:1662:38:1360:-97.0111,0,-124.275	0/1:10:6,4:6:216:4:144:-10.297,0,-16.7786	1/1:96:0,95:0:0:95:3404:-305.873,-28.5979,0	1/1:84:0,84:0:0:84:3020:-271.824,-25.2865,0	1/1:173:0,173:0:0:173:6192:-556.84,-52.0782,0	1/1:62:0,62:0:0:62:2228:-200.511,-18.6639,0	0/1:39:17,22:17:608:22:792:-59.8116,0,-43.3095	0/1:40:25,15:25:887:15:540:-36.8648,0,-68.1046	0/1:112:49,63:49:1752:63:2251:-168.837,0,-124.244	1/1:14:0,14:0:0:14:493:-44.6808,-4.21442,0	1/1:47:0,47:0:0:47:1683:-151.568,-14.1484,0	1/1:50:0,50:0:0:50:1792:-161.483,-15.0515,0	0/1:28:17,11:17:604:11:396:-27.5368,0,-46.2602	0/1:62:36,26:36:1292:26:932:-65.3892,0,-97.9184	0/1:51:33,18:33:1171:18:644:-42.8965,0,-90.272	1/1:146:0,146:0:0:146:5240:-471.225,-43.9504,0	1/1:95:0,95:0:0:95:3412:-307.018,-28.5979,0
chr05	27852876	.	A	G	96145.5	PASS	AB=0.461494;ABP=47.9945;AC=133;AF=0.715054;AN=186;AO=4730;CIGAR=1X;DP=6644;DPB=6644;DPRA=13.2527;EPP=10274.1;EPPR=4150.52;GTI=2;LEN=1;MEANALT=1.04396;MQM=60;MQMR=60;NS=93;NUMALT=1;ODDS=0.707387;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167199;QR=68181;RO=1910;RPL=0;RPP=10274.1;RPPR=4150.52;RPR=4730;RUN=1;SAF=0;SAP=10274.1;SAR=4730;SRF=0;SRP=4150.52;SRR=1910;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:139:80,59:80:2864:59:2096:-147.067,0,-216.154	1/1:56:0,56:0:0:56:1972:-177.755,-16.8577,0	1/1:157:0,156:0:0:156:5543:-498.637,-46.9607,0	0/1:42:29,13:29:1040:13:464:-29.4542,0,-81.2711	0/1:26:20,6:20:716:6:212:-11.598,0,-56.9409	0/1:89:39,50:39:1356:50:1765:-132.339,0,-95.541	1/1:63:3,60:3:108:60:2144:-183.153,-8.88972,0	0/1:65:31,34:31:1108:34:1220:-90.5399,0,-80.464	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:61:0,61:0:0:61:2139:-192.776,-18.3628,0	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	0/1:50:21,29:21:756:29:1036:-78.5024,0,-53.3157	0/1:70:28,42:28:1008:42:1480:-112.422,0,-69.9643	0/1:67:40,27:40:1419:27:951:-65.7353,0,-107.838	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	0/1:48:27,21:27:968:21:748:-53.1959,0,-72.9879	1/1:50:0,50:0:0:50:1780:-160.483,-15.0515,0	0/1:26:12,14:12:432:14:496:-37.1475,0,-31.3944	0/1:137:82,54:82:2918:54:1918:-131.596,0,-221.555	0/1:91:55,36:55:1963:36:1275:-87.6585,0,-149.551	0/1:102:78,24:78:2780:24:847:-45.8437,0,-219.737	0/1:55:43,12:43:1548:12:423:-21.8484,0,-123.056	0/1:102:17,85:17:599:85:2972:-237.007,0,-23.533	1/1:61:0,61:0:0:61:2158:-194.486,-18.3628,0	1/1:244:0,244:0:0:244:8624:-776.166,-73.4513,0	1/1:113:0,113:0:0:113:3949:-355.604,-34.0164,0	0/1:30:13,17:13:468:17:608:-46.0211,0,-33.4287	0/1:163:92,71:92:3283:71:2503:-176.456,0,-246.622	1/1:111:10,101:10:360:101:3540:-286.066,-0.670028,0	1/1:84:0,84:0:0:84:2963:-266.906,-25.2865,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	0/1:151:78,73:78:2778:73:2586:-187.534,0,-204.805	1/1:145:0,145:0:0:145:5135:-462.295,-43.6494,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:100:60,40:60:2147:40:1423:-98.2637,0,-163.394	1/1:18:0,18:0:0:18:632:-57.2068,-5.41854,0	0/1:101:49,52:49:1751:52:1812:-132.952,0,-127.469	0/1:58:35,23:35:1260:23:811:-55.8502,0,-96.2457	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:126:0,126:0:0:126:4470:-402.47,-37.9298,0	0/1:71:43,28:43:1532:28:992:-68.2213,0,-116.8	1/1:116:0,116:0:0:116:4062:-365.77,-34.9195,0	0/1:84:38,46:38:1346:46:1620:-120.8,0,-96.1522	1/1:100:1,99:1:36:99:3491:-310.807,-26.5047,0	0/1:134:71,63:71:2544:63:2223:-159.994,0,-188.873	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:87:49,38:49:1760:38:1352:-95.7908,0,-132.494	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:122:0,122:0:0:122:4305:-387.629,-36.7257,0	0/1:37:21,16:21:743:16:564:-39.9522,0,-56.0552	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:51:2,48:2:72:48:1685:-145.095,-8.57461,0	0/1:69:37,32:37:1328:32:1139:-82.0473,0,-99.0512	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:175:0,175:0:0:175:6189:-557.112,-52.6803,0	0/1:137:70,67:70:2504:67:2380:-173.217,0,-184.371	0/1:50:30,20:30:1068:20:695:-47.8199,0,-81.3806	0/1:54:31,23:31:1095:23:771:-53.4436,0,-82.6035	1/1:160:0,160:0:0:160:5632:-507.008,-48.1648,0	1/1:62:1,61:1:36:61:2139:-189.178,-15.0656,0	0/1:14:3,11:3:108:11:387:-30.9515,0,-5.86075	0/1:66:47,19:47:1672:19:676:-41.3,0,-130.899	0/1:78:37,41:37:1315:41:1468:-108.936,0,-95.1707	1/1:18:1,17:1:36:17:596:-50.3695,-1.82027,0	0/1:89:41,48:41:1468:48:1696:-126.134,0,-105.624	1/1:27:0,27:0:0:27:948:-85.6346,-8.12781,0	1/1:123:0,123:0:0:123:4371:-393.567,-37.0267,0	1/1:105:0,105:0:0:105:3703:-333.474,-31.6082,0	0/1:96:62,34:62:2208:34:1200:-79.4067,0,-170.086	1/1:74:0,74:0:0:74:2624:-236.409,-22.2762,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:80:0,80:0:0:80:2849:-256.647,-24.0824,0	0/1:78:53,25:53:1892:25:876:-55.6767,0,-147.078	0/1:149:62,87:62:2212:87:3073:-231.943,0,-154.492	0/1:68:27,41:27:968:41:1437:-109.154,0,-66.9673	0/1:67:37,30:37:1324:30:1059:-75.4514,0,-99.2931	1/1:103:0,102:0:0:102:3586:-322.589,-30.7051,0	0/1:133:70,63:70:2508:63:2247:-162.456,0,-185.935	0/1:32:16,16:16:572:16:572:-42.1805,0,-42.1805	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:55:23,32:23:824:32:1144:-86.7129,0,-57.9267	1/1:29:0,29:0:0:29:1028:-92.833,-8.72987,0	0/1:45:23,22:23:812:22:776:-56.6158,0,-59.8546	0/1:57:41,16:41:1452:16:576:-35.0163,0,-113.817	1/1:34:0,34:0:0:34:1179:-106.411,-10.235,0	1/1:82:1,81:1:36:81:2836:-251.881,-21.0862,0
chr05	27852889	.	A	T	32699.3	PASS	AB=0.534806;ABP=40.649;AC=53;AF=0.284946;AN=186;AO=1941;CIGAR=1X;DP=6789;DPB=6789;DPRA=0.905263;EPP=4217.84;EPPR=10523.8;GTI=1;LEN=1;MEANALT=1.03509;MQM=60;MQMR=60;NS=93;NUMALT=1;ODDS=0.0240146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69051;QR=172762;RO=4845;RPL=0;RPP=4217.84;RPPR=10523.8;RPR=1941;RUN=1;SAF=0;SAP=4217.84;SAR=1941;SRF=0;SRP=10523.8;SRR=4845;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:145:64,81:64:2288:81:2898:-217.406,0,-162.532	0/0:63:63,0:63:2232:0:0:0,-18.9649,-201.142	0/0:162:162,0:162:5788:0:0:0,-48.7669,-521.036	0/1:40:12,28:12:432:28:996:-77.9137,0,-27.18	0/1:24:6,18:6:212:18:642:-50.885,0,-12.2001	0/1:91:52,39:52:1860:39:1396:-98.5454,0,-140.286	0/0:65:62,3:62:2224:3:108:0,-9.49178,-190.349	0/1:66:36,30:36:1279:30:1067:-76.4732,0,-95.5445	0/0:59:59,0:59:2088:0:0:0,-17.7608,-188.188	0/0:61:61,0:61:2154:0:0:0,-18.3628,-194.127	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/1:59:34,24:34:1211:24:857:-59.6314,0,-91.4761	0/1:70:42,28:42:1482:28:984:-67.7986,0,-112.601	0/1:69:28,41:28:1000:41:1472:-112.005,0,-69.5443	0/0:44:44,0:44:1543:0:0:0,-13.2453,-139.158	0/1:48:23,25:23:824:25:892:-66.1502,0,-60.0339	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.225	0/1:25:14,11:14:496:11:381:-27.0949,0,-37.4485	0/1:140:55,85:55:1976:85:3022:-230.064,0,-135.97	0/1:89:36,53:36:1292:53:1889:-143.495,0,-89.7921	0/1:103:25,78:25:900:78:2785:-219.883,0,-50.3149	0/1:57:12,45:12:432:45:1612:-128.211,0,-22.0625	0/1:104:86,18:86:3092:18:629:-25.6267,0,-247.2	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/0:248:247,0:247:8833:0:0:0,-74.3544,-794.593	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.553	0/1:29:17,12:17:591:12:424:-29.7665,0,-44.7854	0/1:170:77,93:77:2739:93:3302:-246.222,0,-195.578	0/0:115:105,10:105:3748:10:360:0,-1.87415,-304.777	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.882	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	.:.:.:.:.:.:.:.	0/1:156:74,82:74:2627:82:2929:-216.884,0,-189.717	0/0:150:150,0:150:5366:0:0:0,-45.1545,-483.071	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:106:46,60:46:1652:60:2102:-157.535,0,-117.059	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/1:99:50,49:50:1788:49:1734:-126.539,0,-131.401	0/1:60:23,37:23:815:37:1316:-100.68,0,-55.609	0/0:52:52,0:52:1835:0:0:0,-15.6536,-165.43	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.444	0/1:71:27,44:27:959:44:1565:-119.767,0,-65.2523	0/0:114:114,0:114:4065:0:0:0,-34.3174,-366.037	0/1:86:48,38:48:1728:38:1349:-95.8197,0,-129.917	0/0:102:101,1:101:3609:1:36:0,-27.1068,-321.416	0/1:134:63,71:63:2256:71:2552:-189.592,0,-162.965	1/1:8:0,8:0:0:8:269:-24.5361,-2.40824,0	0/1:91:40,51:40:1440:51:1828:-137.407,0,-102.504	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.484	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:125:125,0:125:4432:0:0:0,-37.6287,-399.051	0/1:38:16,22:16:572:22:773:-58.4503,0,-40.3743	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:52:50,2:50:1767:2:68:0,-9.19585,-152.855	0/1:71:32,39:32:1148:39:1392:-104.206,0,-82.2567	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:178:178,0:178:6365:0:0:0,-53.5833,-572.939	0/1:141:71,70:71:2532:70:2484:-181.366,0,-185.687	0/1:52:22,30:22:784:30:1072:-81.1389,0,-55.2304	0/1:59:24,35:24:847:35:1230:-93.24,0,-58.788	0/0:162:162,0:162:5773:0:0:0,-48.7669,-519.686	0/0:60:59,1:59:2085:1:36:0,-14.4635,-184.32	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/1:67:17,49:17:608:49:1747:-137.286,0,-34.8243	0/1:76:40,36:40:1409:36:1296:-94.0657,0,-104.227	0/0:18:17,1:17:608:1:36:0,-1.82026,-51.4537	0/1:94:52,42:52:1851:42:1508:-107.718,0,-138.572	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:124:124,0:124:4427:0:0:0,-37.3277,-398.602	0/0:107:107,0:107:3816:0:0:0,-32.2102,-343.636	0/1:97:34,63:34:1209:63:2207:-169.691,0,-79.9142	0/0:82:82,0:82:2916:0:0:0,-24.6845,-262.677	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.722	0/1:80:27,53:27:964:53:1869:-144.405,0,-62.9944	0/1:152:88,64:88:3148:64:2284:-160.065,0,-237.789	0/1:74:44,30:44:1568:30:1061:-73.5231,0,-119.135	0/1:68:29,39:29:1036:39:1392:-105.109,0,-73.0839	0/0:102:102,0:102:3644:0:0:0,-30.7051,-328.165	0/1:135:63,72:63:2238:72:2565:-190.46,0,-161.044	0/1:33:18,15:18:629:15:531:-38.1879,0,-46.9998	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/1:57:32,25:32:1139:25:900:-64.1623,0,-85.6597	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/1:49:23,26:23:812:26:919:-68.2757,0,-58.6504	0/1:58:19,39:19:671:39:1385:-107.487,0,-43.2561	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.899
chr05	27886707	.	T	A	68569.2	PASS	AB=0.507445;ABP=4.23899;AC=136;AF=0.73913;AN=184;AO=3585;CIGAR=1X;DP=4853;DPB=4853;DPRA=17.7656;EPP=7317.34;EPPR=2659.55;GTI=1;LEN=1;MEANALT=1.01099;MQM=36.7127;MQMR=59.1018;NS=92;NUMALT=1;ODDS=1.12689;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128560;QR=45285;RO=1267;RPL=3530;RPP=7317.34;RPPR=2659.55;RPR=55;RUN=1;SAF=0;SAP=7787.74;SAR=3585;SRF=0;SRP=2754.27;SRR=1267;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1512:-126.548,-12.6433,0	0/1:43:15,28:15:521:28:1008:-72.7245,0,-34.272	1/1:51:0,51:0:0:51:1836:-153.871,-15.3525,0	1/1:72:0,72:0:0:72:2584:-211.426,-21.6742,0	0/1:47:17,29:17:612:29:1044:-73.487,0,-41.2238	0/1:35:18,17:18:644:17:612:-40.8316,0,-47.7507	0/1:57:30,27:30:1072:27:968:-64.4394,0,-79.476	1/1:61:1,60:1:36:60:2156:-177.819,-14.7646,0	0/1:69:25,44:25:881:44:1568:-112.351,0,-58.8348	1/1:52:0,52:0:0:52:1872:-155.18,-15.6536,0	1/1:42:1,41:1:36:41:1468:-118.836,-9.04499,0	1/1:70:0,70:0:0:70:2486:-207.042,-21.0721,0	0/1:68:31,37:31:1100:37:1332:-91.407,0,-78.8379	0/1:52:34,18:34:1216:18:648:-38.8886,0,-93.5197	0/1:46:16,30:16:576:30:1080:-75.8591,0,-38.3276	1/1:41:0,41:0:0:41:1472:-123.38,-12.3422,0	0/1:18:10,8:10:360:8:288:-19.0476,0,-27.308	1/1:20:0,20:0:0:20:720:-60.0022,-6.0206,0	0/1:41:18,23:18:636:23:828:-58.1524,0,-45.2249	0/1:63:37,26:37:1328:26:928:-59.1898,0,-100.829	0/1:130:74,56:74:2648:56:2004:-128.251,0,-199.364	0/1:28:17,11:17:612:11:396:-24.6042,0,-46.9846	0/1:45:25,20:25:877:20:720:-46.9284,0,-65.6988	1/1:13:0,13:0:0:13:468:-39.3406,-3.91339,0	1/1:88:0,88:0:0:88:3168:-263.434,-26.4906,0	1/1:186:0,186:0:0:186:6681:-549.834,-55.9916,0	1/1:104:0,104:0:0:104:3721:-310.036,-31.3071,0	0/1:24:10,14:10:356:14:500:-33.5056,0,-25.1565	0/1:36:20,16:20:720:16:576:-37.0415,0,-54.1602	1/1:40:3,37:3:108:37:1328:-101.516,-1.96603,0	1/1:44:0,44:0:0:44:1584:-131.087,-13.2453,0	1/1:1:0,1:0:0:1:36:-3.34615,-0.30103,0	1/1:12:0,12:0:0:12:419:-35.6075,-3.61236,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-12.5341,-1.20412,0	1/1:4:0,4:0:0:4:144:-12.5674,-1.20412,0	0/1:160:77,83:77:2764:83:2984:-196.077,0,-200.701	1/1:93:0,93:0:0:93:3336:-278.567,-27.9958,0	1/1:52:0,52:0:0:52:1872:-157.029,-15.6536,0	.:.:.:.:.:.:.:.	0/1:21:9,12:9:320:12:432:-29.3527,0,-22.7347	1/1:24:0,24:0:0:24:864:-72.6114,-7.22472,0	0/1:73:39,34:39:1392:34:1224:-80.7515,0,-103.474	0/1:49:25,24:25:900:24:864:-57.8609,0,-66.4893	1/1:36:0,36:0:0:36:1292:-104.524,-10.8371,0	1/1:98:0,98:0:0:98:3508:-288.204,-29.5009,0	0/1:39:14,25:14:500:25:900:-63.9498,0,-33.5675	1/1:85:0,85:0:0:85:3048:-255.814,-25.5876,0	0/1:56:24,32:24:864:32:1152:-79.2546,0,-61.1091	1/1:36:0,36:0:0:36:1278:-105.36,-10.8371,0	0/1:117:41,76:41:1476:76:2724:-189.522,0,-97.857	0/1:5:3,2:3:108:2:72:-4.85253,0,-8.57002	0/1:46:17,29:17:612:29:1044:-74.3216,0,-41.5661	1/1:24:0,24:0:0:24:864:-71.4653,-7.22472,0	0/1:5:1,4:1:36:4:144:-11.029,0,-2.09312	1/1:34:0,34:0:0:34:1224:-98.1273,-10.235,0	0/1:7:3,4:3:108:4:144:-10.2735,0,-7.96796	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:13:0,13:0:0:13:468:-37.9948,-3.91339,0	1/1:42:0,42:0:0:42:1508:-124.993,-12.6433,0	0/1:69:34,35:34:1224:35:1256:-83.8494,0,-89.6602	1/1:1:0,1:0:0:1:36:-3.34615,-0.30103,0	1/1:57:0,57:0:0:57:2036:-168.232,-17.1587,0	0/1:137:77,60:77:2757:60:2143:-136.428,0,-206.642	0/1:31:21,10:21:756:10:356:-20.0764,0,-59.0353	0/1:14:8,6:8:288:6:216:-14.1894,0,-22.053	1/1:110:1,109:1:36:109:3904:-321.972,-29.515,0	1/1:98:0,98:0:0:98:3520:-292.563,-29.5009,0	0/1:15:5,10:5:180:10:360:-25.9345,0,-12.0366	0/1:24:14,10:14:488:10:356:-23.4292,0,-36.0819	0/1:50:30,20:30:1068:20:720:-44.7035,0,-81.1835	1/1:5:0,5:0:0:5:180:-15.3923,-1.50515,0	0/1:102:42,60:42:1488:60:2132:-150.012,0,-103.509	1/1:46:0,46:0:0:46:1656:-138.957,-13.8474,0	1/1:85:0,85:0:0:85:3040:-252.33,-25.5876,0	1/1:53:0,53:0:0:53:1908:-159.026,-15.9546,0	0/1:49:29,20:29:1036:20:720:-46.5977,0,-78.5838	1/1:29:1,28:1:36:28:1008:-81.7696,-5.1316,0	0/1:6:3,3:3:104:3:108:-7.6791,0,-7.89663	1/1:61:0,61:0:0:61:2188:-180.408,-18.3628,0	0/1:31:9,22:9:320:22:784:-57.5626,0,-19.8104	0/1:110:63,47:63:2252:47:1688:-106.769,0,-169.494	0/1:59:24,35:24:860:35:1248:-85.7108,0,-59.9565	0/1:43:25,18:25:881:18:648:-40.7171,0,-66.6607	1/1:68:0,68:0:0:68:2419:-199.212,-20.47,0	0/1:187:86,101:86:3084:101:3616:-244.97,0,-221.151	0/1:17:10,7:10:360:7:252:-16.596,0,-27.5982	1/1:51:1,50:1:36:50:1787:-148.398,-11.7857,0	0/1:72:38,34:38:1364:34:1220:-82.0955,0,-100.767	1/1:27:0,27:0:0:27:968:-79.817,-8.12781,0	0/1:62:25,37:25:896:37:1332:-91.51,0,-62.2396	0/1:94:63,31:63:2248:31:1116:-65.3953,0,-173.752	1/1:45:0,45:0:0:45:1620:-133.469,-13.5464,0	1/1:78:0,78:0:0:78:2774:-232.544,-23.4803,0
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chr05	27898024	.	A	T	35426.7	PASS	AB=0.524365;ABP=23.3273;AC=51;AF=0.274194;AN=186;AO=2087;CIGAR=1X;DP=7593;DPB=7593;DPRA=1.02;EPP=4526.19;EPPR=11909.2;GTI=0;LEN=1;MEANALT=1.11321;MQM=54.2017;MQMR=50.3308;NS=93;NUMALT=1;ODDS=1.31814;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74640;QR=196809;RO=5499;RPL=1;RPP=4526.19;RPPR=11909.2;RPR=2086;RUN=1;SAF=2087;SAP=4534.87;SAR=0;SRF=5499;SRP=11943.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.012	0/1:125:73,52:73:2609:52:1864:-129.996,0,-196.97	0/0:105:104,1:104:3690:1:36:0,-28.0189,-327.916	0/0:182:182,0:182:6494:0:0:0,-54.7875,-580.941	0/1:101:34,67:34:1216:67:2408:-185.742,0,-78.7845	0/1:54:23,31:23:828:31:1116:-84.0551,0,-58.5345	0/1:137:72,65:72:2569:65:2332:-168.66,0,-188.661	0/0:139:139,0:139:4972:0:0:0,-41.8432,-446.347	0/1:128:82,46:82:2948:46:1644:-109.139,0,-226.463	0/0:74:74,0:74:2625:0:0:0,-22.2762,-235.244	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.282	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.176	0/1:49:19,30:19:684:30:1080:-82.37,0,-47.093	0/1:40:14,26:14:504:26:932:-72.0249,0,-33.4727	0/1:48:26,22:26:932:22:784:-56.0922,0,-68.9855	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.004	0/1:66:33,33:33:1188:33:1180:-86.3803,0,-87.1818	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.09	0/1:17:13,4:13:464:4:144:-8.16264,0,-36.9393	0/1:218:97,120:97:3454:120:4280:-318.168,0,-242.039	0/1:143:73,70:73:2609:70:2512:-182.468,0,-190.825	0/1:180:59,121:59:2120:121:4329:-335.108,0,-135.058	0/1:68:29,39:29:1025:39:1400:-105.73,0,-71.2796	0/0:31:29,2:29:1044:2:72:0,-2.5049,-87.1471	0/0:44:44,0:44:1580:0:0:0,-13.2453,-141.272	0/0:400:400,0:400:14284:0:0:0,-120.412,-1268.48	0/0:206:206,0:206:7392:0:0:0,-62.0122,-661.57	0/1:28:9,19:9:324:19:671:-52.1968,0,-20.7613	0/1:223:104,119:104:3736:119:4249:-314.28,0,-266.439	0/0:118:117,1:117:4208:1:36:0,-31.9284,-373.251	0/0:99:99,0:99:3540:0:0:0,-29.802,-316.455	1/1:9:0,9:0:0:9:315:-28.4885,-2.70927,0	0/0:21:21,0:21:741:0:0:0,-6.32163,-66.4874	.:.:.:.:.:.:.:.	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0683	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2485	0/1:183:84,99:84:3016:99:3522:-261.331,0,-213.481	0/0:150:150,0:150:5400:0:0:0,-45.1545,-482.978	0/0:48:48,0:48:1720:0:0:0,-14.4494,-154.547	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58648	0/1:106:57,49:57:2018:49:1764:-126.771,0,-148.583	0/0:28:28,0:28:1004:0:0:0,-8.42884,-89.7324	0/1:68:38,30:38:1368:30:1071:-75.924,0,-102.358	0/1:66:37,28:37:1332:28:999:-70.2345,0,-99.728	0/0:55:55,0:55:1972:0:0:0,-16.5566,-174.958	0/0:147:147,0:147:5268:0:0:0,-44.2514,-469.341	0/1:116:56,60:56:2012:60:2134:-156.714,0,-146.177	0/0:104:104,0:104:3728:0:0:0,-31.3071,-333.671	0/1:92:41,51:41:1468:51:1836:-137.452,0,-103.901	0/0:100:100,0:100:3596:0:0:0,-30.103,-321.132	0/1:80:56,24:56:1997:24:840:-51.739,0,-154.281	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	0/1:81:45,36:45:1616:36:1292:-91.7256,0,-120.874	0/0:29:29,0:29:1044:0:0:0,-8.72987,-93.3358	0/1:12:6,6:6:216:6:216:-16.1284,0,-16.1639	0/0:117:117,0:117:4208:0:0:0,-35.2205,-376.797	0/1:36:21,15:21:756:15:536:-37.4486,0,-56.9155	0/1:3:2,1:2:72:1:36:-2.69418,0,-5.87385	0/0:14:14,0:14:489:0:0:0,-4.21442,-43.9817	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.6089	0/1:84:42,42:42:1508:42:1504:-110.029,0,-110.033	0/1:8:4,4:4:144:4:144:-10.8958,0,-10.849	0/0:230:230,0:230:8203:0:0:0,-69.2369,-728.4	0/1:197:108,89:108:3839:89:3172:-225.836,0,-284.28	0/1:53:32,21:32:1144:21:752:-51.8333,0,-86.9218	0/1:64:34,30:34:1220:30:1080:-78.1702,0,-90.3778	0/0:157:153,4:153:5473:4:144:0,-33.9577,-475.154	0/0:71:71,0:71:2529:0:0:0,-21.3731,-226.3	0/1:10:3,7:3:108:7:252:-19.986,0,-7.03185	0/1:54:30,24:30:1080:24:856:-60.9253,0,-81.0598	0/1:66:26,40:26:936:40:1424:-107.465,0,-63.9699	0/0:32:32,0:32:1152:0:0:0,-9.63296,-102.398	0/1:127:49,78:49:1749:78:2766:-209.649,0,-119.349	0/0:53:53,0:53:1862:0:0:0,-15.9546,-166.191	0/0:180:180,0:180:6429:0:0:0,-54.1854,-575.027	0/0:80:80,0:80:2861:0:0:0,-24.0824,-256.197	0/1:89:44,45:44:1584:45:1616:-117.741,0,-115.646	0/0:66:66,0:66:2353:0:0:0,-19.868,-211.755	0/1:14:3,11:3:108:11:396:-31.6863,0,-5.85348	0/0:86:86,0:86:3096:0:0:0,-25.8886,-276.869	0/1:118:57,61:57:2018:61:2168:-158.58,0,-146.077	0/1:176:54,122:54:1940:122:4388:-340.904,0,-120.204	0/1:87:44,40:44:1576:40:1436:-103.546,0,-115.537	0/1:34:16,17:16:576:17:612:-45.0796,0,-41.698	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.209	0/1:101:39,62:39:1400:62:2228:-170.134,0,-94.5251	0/1:30:16,14:16:572:14:504:-36.0003,0,-42.6421	0/0:41:41,0:41:1476:0:0:0,-12.3422,-132.434	0/1:54:18,35:18:644:35:1260:-97.0859,0,-41.9363	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.8648	0/1:42:21,21:21:737:21:743:-54.3309,0,-53.512	0/1:64:24,40:24:864:40:1421:-108.741,0,-58.3814	0/0:83:83,0:83:2988:0:0:0,-24.9855,-266.01	0/0:67:67,0:67:2400:0:0:0,-20.169,-215.338
chr05	27898030	.	T	C	111870	PASS	AB=0.468806;ABP=36.2017;AC=135;AF=0.725806;AN=186;AO=5431;CIGAR=1X;DP=7544;DPB=7544;DPRA=15.0509;EPP=11744.2;EPPR=4560.95;GTI=0;LEN=1;MEANALT=1.06593;MQM=50.3379;MQMR=54.3237;NS=93;NUMALT=1;ODDS=2.10377;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193802;QR=75433;RO=2107;RPL=6;RPP=11744.2;RPPR=4560.95;RPR=5425;RUN=1;SAF=5431;SAP=11796.3;SAR=0;SRF=2107;SRP=4578.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1207:-108.829,-10.235,0	0/1:125:52,73:52:1856:73:2606:-196.69,0,-128.517	1/1:101:1,100:1:36:100:3584:-318.299,-26.8148,0	1/1:182:0,182:0:0:182:6491:-580.761,-54.7875,0	0/1:101:67,34:67:2400:34:1224:-79.4923,0,-185.293	0/1:51:29,22:29:1040:22:792:-56.2015,0,-78.142	0/1:137:65,72:65:2340:72:2558:-187.624,0,-169.373	1/1:140:0,140:0:0:140:4979:-447.341,-42.1442,0	0/1:124:43,80:43:1532:80:2847:-218.643,0,-100.456	1/1:72:0,72:0:0:72:2577:-230.986,-21.6742,0	1/1:23:0,23:0:0:23:824:-73.9294,-6.92369,0	1/1:49:0,49:0:0:49:1747:-157.19,-14.7505,0	0/1:51:32,19:32:1152:19:680:-46.1311,0,-88.2416	0/1:40:26,14:26:917:14:504:-33.4727,0,-70.6752	0/1:47:22,25:22:788:25:882:-65.1273,0,-56.7527	1/1:31:0,31:0:0:31:1107:-99.552,-9.33193,0	0/1:67:34,33:34:1224:33:1171:-85.3517,0,-90.0147	1/1:31:0,31:0:0:31:1108:-99.9573,-9.33193,0	0/1:16:4,12:4:144:12:401:-31.5692,0,-8.46367	0/1:215:120,95:120:4291:95:3399:-238.238,0,-320.12	0/1:141:70,71:70:2512:71:2530:-184.346,0,-182.298	0/1:187:126,61:126:4509:61:2166:-137.115,0,-349.188	0/1:66:38,28:38:1368:28:986:-68.5348,0,-103.457	1/1:31:2,29:2:72:29:1040:-86.793,-2.5049,0	1/1:44:0,44:0:0:44:1576:-141.465,-13.2453,0	1/1:394:0,394:0:0:394:14069:-1249.89,-118.606,0	1/1:201:3,198:3:93:198:7062:-623.975,-51.8413,0	0/1:27:18,9:18:625:9:324:-21.0624,0,-48.3624	0/1:221:119,102:119:4261:102:3639:-258.453,0,-315.294	1/1:122:2,120:2:72:120:4271:-375.676,-29.8938,0	1/1:99:0,99:0:0:99:3531:-315.638,-29.802,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9986	1/1:20:0,20:0:0:20:716:-64.5555,-6.0206,0	.:.:.:.:.:.:.:.	1/1:13:0,13:0:0:13:464:-42.0683,-3.91339,0	1/1:8:0,8:0:0:8:284:-25.8858,-2.40824,0	0/1:180:100,80:100:3576:80:2845:-199.596,0,-267.038	1/1:150:0,150:0:0:150:5366:-480.709,-45.1545,0	1/1:48:0,48:0:0:48:1689:-151.859,-14.4494,0	1/1:1:0,1:0:0:1:36:-3.58648,-0.30103,0	0/1:106:49,57:49:1764:57:2036:-149.746,0,-126.771	1/1:29:0,29:0:0:29:1025:-91.8179,-8.72987,0	0/1:66:33,33:33:1184:33:1184:-86.4284,0,-86.7346	0/1:66:29,37:29:1040:37:1328:-99.4327,0,-73.9798	1/1:54:0,54:0:0:54:1926:-171.306,-16.2556,0	1/1:147:0,147:0:0:147:5273:-470.05,-44.2514,0	0/1:117:61,56:61:2184:56:2012:-145.876,0,-160.797	1/1:101:0,101:0:0:101:3607:-322.224,-30.404,0	0/1:93:52,41:52:1856:41:1444:-101.621,0,-138.951	1/1:96:0,96:0:0:96:3450:-308.58,-28.8989,0	0/1:80:24,56:24:864:56:2004:-154.919,0,-53.851	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.304	0/1:83:38,45:38:1347:45:1605:-119.603,0,-96.0699	1/1:29:0,29:0:0:29:1040:-92.9922,-8.72987,0	0/1:12:6,6:6:216:6:216:-16.1639,0,-16.1284	1/1:118:0,117:0:0:117:4178:-373.87,-35.2205,0	0/1:36:15,21:15:536:21:748:-56.21,0,-37.3949	0/1:3:1,2:1:36:2:72:-5.87385,0,-2.69418	1/1:14:0,14:0:0:14:504:-45.3132,-4.21442,0	1/1:29:0,29:0:0:29:1035:-93.1625,-8.72987,0	0/1:85:42,43:42:1512:43:1544:-112.844,0,-110.446	0/1:8:4,4:4:144:4:144:-10.849,0,-10.8958	1/1:225:0,224:0:0:224:7972:-708.424,-67.4307,0	0/1:195:90,104:90:3216:104:3699:-272.245,0,-230.514	0/1:52:22,30:22:776:30:1063:-79.954,0,-54.2986	0/1:63:30,33:30:1080:33:1188:-87.81,0,-78.4712	1/1:153:3,150:3:104:150:5308:-464.294,-36.3606,0	1/1:71:0,71:0:0:71:2544:-227.577,-21.3731,0	0/1:10:7,3:7:252:3:108:-7.03185,0,-19.986	0/1:55:24,31:24:856:31:1116:-83.9949,0,-60.6277	0/1:66:39,27:39:1400:27:968:-66.8258,0,-106.325	1/1:33:0,33:0:0:33:1184:-105.273,-9.93399,0	0/1:128:79,49:79:2831:49:1751:-119.23,0,-215.32	1/1:51:0,51:0:0:51:1827:-163.862,-15.3525,0	1/1:181:1,180:1:36:180:6443:-572.659,-50.8882,0	1/1:78:0,78:0:0:78:2786:-249.861,-23.4803,0	0/1:88:44,44:44:1580:44:1569:-114.669,0,-114.817	1/1:66:1,65:1:36:65:2314:-204.76,-16.2697,0	0/1:14:11,3:11:396:3:108:-5.85348,0,-31.6863	1/1:86:0,85:0:0:85:3042:-271.723,-25.5876,0	0/1:114:61,53:61:2180:53:1872:-134.213,0,-160.69	0/1:175:122,53:122:4359:53:1875:-114.741,0,-338.531	0/1:86:41,45:41:1472:45:1604:-117.243,0,-106.518	0/1:34:18,16:18:644:16:576:-41.5045,0,-47.9932	1/1:51:0,51:0:0:51:1798:-161.433,-15.3525,0	0/1:107:66,41:66:2376:41:1467:-98.5502,0,-181.634	0/1:28:13,15:13:468:15:540:-40.4724,0,-33.9241	1/1:40:0,40:0:0:40:1440:-129.687,-12.0412,0	0/1:55:36,19:36:1292:19:684:-45.185,0,-99.7297	1/1:11:0,11:0:0:11:396:-35.8648,-3.31133,0	0/1:42:21,20:21:752:20:715:-51.7385,0,-55.2316	0/1:64:40,24:40:1440:24:864:-58.3814,0,-110.45	1/1:82:0,82:0:0:82:2920:-260.385,-24.6845,0	1/1:67:0,67:0:0:67:2404:-215.695,-20.169,0
chr05	27909541	.	AGCC	CGCC,CGCT	174800	PASS	AB=0.494305,0.497627;ABP=4.19755,3.21642;AC=137,51;AF=0.728723,0.271277;AN=188;AO=6155,2126;CIGAR=1X3M,1X2M1X;DP=8347;DPB=8347.5;DPRA=25.9006,1.19145;EPP=13351.1,4515.92;EPPR=37.7539;GTI=0;LEN=1,4;MEANALT=2.11957,2.53448;MQM=59.9547,59.6453;MQMR=58.5625;NS=94;NUMALT=2;ODDS=2.44081;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=0;PRO=0;QA=218117,74194;QR=515;RO=16;RPL=6154,2126;RPP=13359.7,4619.56;RPPR=3.0103;RPR=1,0;RUN=1,1;SAF=6152,2114;SAP=13342.4,4515.92;SAR=3,12;SRF=8;SRP=3.0103;SRR=8;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:70:0,70,0:0:0:70,0:2503,0:-225.522,-21.0721,0,-225.522,-21.0721,-225.522	1/2:102:0,48,54:0:0:48,54:1716,1872:-292.425,-152.501,-138.052,-140.276,0,-124.021	1/1:174:0,173,0:0:0:173,0:6157,0:-553.954,-52.0782,0,-553.954,-52.0782,-553.954	1/1:226:0,225,1:0:0:225,1:7929,36:-713.282,-67.7318,0,-710.344,-64.4345,-710.043	1/2:55:0,24,31:0:0:24,31:852,1084:-157.878,-88.455,-81.2303,-69.7757,0,-60.4437	1/2:50:0,24,26:0:0:24,26:836,909:-142.276,-74.2948,-67.0701,-68.33,0,-60.5032	1/2:119:1,51,66:1:35:51,66:1805,2337:-334.23,-187.508,-175.003,-144.175,0,-127.155	1/1:149:1,145,2:1:36:145,2:5172,65:-462.061,-40.6986,0,-457.116,-38.3986,-459.452	1/2:126:0,66,60:0:0:66,60:2332,2069:-358.334,-168.415,-148.547,-190.268,0,-172.206	1/1:104:1,103,0:1:25:103,0:3653,0:-326.475,-28.8073,0,-326.776,-31.0061,-328.724	1/1:66:0,66,0:0:0:66,0:2334,0:-210.319,-19.868,0,-210.319,-19.868,-210.319	1/1:94:0,94,0:0:0:94,0:3312,0:-298.3,-28.2968,0,-298.3,-28.2968,-298.3	1/2:88:0,40,48:0:0:40,48:1414,1635:-248.145,-132.977,-120.936,-115.515,0,-101.065	1/2:74:0,46,27:0:0:46,27:1609,927:-206.209,-75.3039,-61.4566,-130.949,0,-122.821	1/2:88:0,53,35:0:0:53,35:1895,1220:-254.048,-99.5335,-83.579,-154.867,0,-144.331	1/1:83:0,83,0:0:0:83,0:2910,0:-262.136,-24.9855,0,-262.136,-24.9855,-262.136	1/2:51:0,19,32:0:0:19,32:665,1056:-139.812,-85.7017,-79.9821,-54.4532,0,-44.8203	1/1:29:0,28,0:0:0:28,0:989,0:-88.9624,-8.42884,0,-88.9624,-8.42884,-88.9624	1/2:29:0,17,12:0:0:17,12:600,418:-83.2026,-34.341,-29.2235,-49.2117,0,-45.5993	1/2:180:0,68,110:0:0:68,110:2428,3858:-511.887,-313.935,-293.465,-197.98,0,-164.867	1/2:180:0,88,91:0:0:88,91:3139,3199:-516.344,-260.452,-233.961,-255.955,0,-228.561	1/2:57:0,25,30:0:0:25,30:884,1067:-158.989,-86.9893,-79.4636,-72.0302,0,-62.9993	1/2:145:0,75,69:0:0:75,69:2651,2399:-411.002,-195.095,-172.517,-215.967,0,-195.196	1/2:80:0,61,19:0:0:61,19:2173,668:-231.845,-54.726,-36.3632,-177.472,0,-171.752	1/1:81:0,80,0:0:0:80,0:2837,0:-255.21,-24.0824,0,-255.21,-24.0824,-255.21	1/1:253:0,252,0:0:0:252,0:8941,0:-804.474,-75.8596,0,-804.474,-75.8596,-804.474	1/1:171:0,170,0:0:0:170,0:6038,0:-543.166,-51.1751,0,-543.166,-51.1751,-543.166	1/2:28:0,19,9:0:0:19,9:661,304:-78.7295,-24.9784,-19.2588,-54.092,0,-51.3828	1/2:246:0,133,113:0:0:133,113:4733,3940:-706.467,-320.726,-280.689,-386.093,0,-352.076	1/1:115:0,106,8:0:0:106,8:3759,285:-338.154,-31.9092,0,-314.924,-8.68239,-312.516	1/1:94:0,93,0:0:0:93,0:3295,0:-296.259,-27.9958,0,-296.259,-27.9958,-296.259	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:9:0,9,0:0:0:9,0:301,0:-27.4137,-2.70927,0,-27.4137,-2.70927,-27.4137	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:143:0,74,69:0:0:74,69:2586,2402:-406.003,-195.641,-173.365,-210.71,0,-189.939	1/1:51:1,50,0:1:24:50,0:1747,0:-155.129,-12.9737,0,-155.43,-15.0515,-157.268	1/1:44:0,44,0:0:0:44,0:1566,0:-141.231,-13.2453,0,-141.231,-13.2453,-141.231	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:137:0,51,85:0:0:51,85:1787,2970:-386.976,-241.571,-226.218,-145.396,0,-119.808	1/1:22:0,22,0:0:0:22,0:779,0:-70.4321,-6.62266,0,-70.4321,-6.62266,-70.4321	1/2:134:0,64,68:0:0:64,68:2278,2340:-375.664,-190,-170.734,-185.655,0,-165.185	1/2:49:0,28,21:0:0:28,21:1004,735:-142.045,-60.1514,-51.7225,-82.247,0,-75.9254	1/1:65:0,64,0:0:0:64,0:2229,0:-200.379,-19.2659,0,-200.379,-19.2659,-200.379	1/1:88:1,87,0:1:25:87,0:3078,0:-274.748,-23.9908,0,-275.049,-26.1896,-276.997	1/2:96:0,57,38:0:0:57,38:2023,1345:-274.376,-109.546,-92.3875,-164.824,0,-153.385	1/1:163:0,161,1:0:0:161,1:5690,36:-511.92,-48.4658,0,-508.983,-45.4585,-508.682	1/2:68:0,39,28:0:0:39,28:1387,993:-193.997,-80.9616,-69.2214,-113.165,0,-104.736	1/1:136:0,134,0:0:0:134,0:4747,0:-427.017,-40.338,0,-427.017,-40.338,-427.017	1/2:106:0,55,51:0:0:55,51:1940,1790:-303.978,-146.012,-129.456,-158.317,0,-142.965	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:120:1,65,53:1:36:65,53:2321,1848:-336.273,-147.345,-130.716,-186.284,0,-173.267	1/1:59:0,59,0:0:0:59,0:2106,0:-189.789,-17.7608,0,-189.789,-17.7608,-189.789	1/2:8:0,3,5:0:0:3,5:108,179:-23.7636,-14.9552,-14.0522,-9.16732,0,-7.66217	1/1:131:0,130,0:0:0:130,0:4580,0:-412.057,-39.1339,0,-412.057,-39.1339,-412.057	1/2:67:0,34,30:0:0:34,30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chr05	27918975	.	G	A	100497	PASS	AB=0.500831;ABP=3.03197;AC=139;AF=0.739362;AN=188;AO=5825;CIGAR=1X;DP=7650;DPB=7650;DPRA=0;EPP=12547.8;EPPR=3931.25;GTI=0;LEN=1;MEANALT=1.04255;MQM=33.99;MQMR=35.9462;NS=94;NUMALT=1;ODDS=9.04474;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208203;QR=64872;RO=1821;RPL=5813;RPP=12547.8;RPPR=3939.91;RPR=12;RUN=1;SAF=0;SAP=12651.8;SAR=5825;SRF=1;SRP=3948.58;SRR=1820;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:716:-53.8299,-6.0206,0	0/1:78:27,51:27:960:51:1808:-110.708,0,-50.7851	1/1:131:0,131:0:0:131:4687:-349.671,-39.4349,0	1/1:177:0,177:0:0:177:6355:-513.403,-53.2823,0	0/1:10:3,7:3:104:7:248:-16.8188,0,-6.36386	0/1:22:9,13:9:320:13:468:-25.1246,0,-18.8295	0/1:65:31,34:31:1091:34:1203:-78.4221,0,-72.4342	1/1:115:0,115:0:0:115:4106:-301.854,-34.6185,0	0/1:53:29,24:29:1028:24:847:-47.7338,0,-64.0652	1/1:69:0,69:0:0:69:2459:-199.548,-20.7711,0	1/1:102:1,101:1:36:101:3616:-287.805,-27.3175,0	1/1:81:0,81:0:0:81:2888:-214.813,-24.3834,0	0/1:65:32,33:32:1139:33:1188:-69.9936,0,-69.1936	0/1:106:51,55:51:1819:55:1978:-120.033,0,-115.977	0/1:62:33,29:33:1162:29:1044:-65.9089,0,-79.2366	1/1:68:0,68:0:0:68:2448:-189.817,-20.47,0	0/1:79:34,45:34:1212:45:1608:-96.9981,0,-70.8264	1/1:42:0,42:0:0:42:1504:-112.143,-12.6433,0	0/1:41:16,25:16:576:25:896:-54.5358,0,-32.821	0/1:145:76,69:76:2703:69:2464:-157.405,0,-186.092	0/1:165:85,79:85:3031:79:2825:-170.552,0,-195.273	0/1:69:41,28:41:1460:28:1004:-64.3133,0,-104.42	0/1:29:8,21:8:288:21:748:-52.4337,0,-15.4993	1/1:60:4,56:4:140:56:2008:-145.256,-6.25683,0	1/1:48:0,48:0:0:48:1720:-132.5,-14.4494,0	1/1:191:1,190:1:36:190:6800:-566.94,-54.0422,0	1/1:110:0,110:0:0:110:3907:-304.905,-33.1133,0	0/1:26:13,13:13:460:13:468:-29.0321,0,-29.739	0/1:178:97,80:97:3442:80:2868:-188.284,0,-243.615	1/1:175:6,169:6:216:169:6001:-447.981,-34.9387,0	1/1:38:0,38:0:0:38:1356:-110.52,-11.4391,0	0/1:13:6,7:6:216:7:252:-13.6189,0,-13.9405	1/1:19:0,19:0:0:19:680:-52.9252,-5.71957,0	1/1:9:0,9:0:0:9:324:-23.9284,-2.70927,0	1/1:6:0,6:0:0:6:207:-16.0036,-1.80618,0	1/1:11:0,11:0:0:11:396:-29.8075,-3.31133,0	0/1:137:72,65:72:2564:65:2313:-152.125,0,-178.577	1/1:83:0,83:0:0:83:2963:-233.158,-24.9855,0	1/1:59:0,59:0:0:59:2124:-157.893,-17.7608,0	1/1:1:0,1:0:0:1:36:-3.12364,-0.30103,0	0/1:122:63,59:63:2247:59:2089:-126.93,0,-144.336	1/1:76:0,76:0:0:76:2686:-211.637,-22.8783,0	0/1:103:44,59:44:1568:59:2115:-132.124,0,-94.7271	0/1:48:23,25:23:824:25:900:-58.0083,0,-55.5896	1/1:46:0,46:0:0:46:1648:-133.831,-13.8474,0	1/1:55:0,55:0:0:55:1969:-166.398,-16.5567,0	0/1:65:40,25:40:1432:25:900:-47.798,0,-91.9035	1/1:119:2,117:2:72:117:4198:-333.416,-29.3861,0	0/1:87:46,41:46:1639:41:1459:-92.4594,0,-112.146	1/1:158:0,158:0:0:158:5676:-459.621,-47.5627,0	0/1:68:38,30:38:1360:30:1080:-70.3045,0,-97.5075	0/1:24:12,12:12:432:12:432:-27.9358,0,-29.5716	0/1:137:63,74:63:2251:74:2643:-153.428,0,-133.837	1/1:105:0,105:0:0:105:3751:-315.377,-31.6082,0	0/1:15:6,9:6:216:9:324:-19.7812,0,-12.4621	1/1:135:0,135:0:0:135:4801:-374.498,-40.6391,0	0/1:7:5,2:5:171:2:72:-4.06049,0,-12.6444	0/1:19:11,8:11:396:8:288:-18.9721,0,-26.3429	1/1:17:0,17:0:0:17:612:-51.4182,-5.11751,0	1/1:112:0,112:0:0:112:4011:-313.492,-33.7154,0	0/1:155:89,66:89:3177:66:2357:-144.688,0,-221.283	0/1:6:5,1:5:180:1:36:-1.43998,0,-13.6467	1/1:190:1,189:1:36:189:6724:-563.752,-53.7412,0	0/1:148:64,83:64:2274:83:2943:-193.049,0,-148.778	0/1:80:39,40:39:1378:40:1424:-85.3173,0,-88.0198	0/1:52:32,20:32:1127:20:720:-42.258,0,-79.1397	1/1:177:1,176:1:36:176:6312:-506.238,-49.8947,0	1/1:191:4,187:4:140:187:6694:-530.017,-45.2261,0	0/1:62:31,31:31:1112:31:1116:-68.0712,0,-69.2257	0/1:41:16,25:16:576:25:896:-54.6801,0,-32.821	0/1:45:20,25:20:720:25:900:-62.9481,0,-48.6526	1/1:40:0,40:0:0:40:1405:-115.07,-12.0412,0	0/1:104:54,50:54:1919:50:1796:-100.034,0,-116.462	1/1:90:0,90:0:0:90:3228:-241.19,-27.0927,0	1/1:92:0,92:0:0:92:3296:-257.176,-27.6948,0	1/1:193:0,193:0:0:193:6901:-557.167,-58.0988,0	0/1:49:24,25:24:851:25:883:-52.1986,0,-52.0018	1/1:186:1,185:1:36:185:6607:-485.262,-53.0108,0	0/1:37:22,15:22:788:15:540:-29.4001,0,-50.6033	1/1:114:2,112:2:72:112:4024:-307.783,-28.1497,0	0/1:79:37,42:37:1320:42:1504:-87.4373,0,-79.5889	0/1:149:76,73:76:2712:73:2616:-166.22,0,-184.909	0/1:44:19,25:19:676:25:879:-57.6881,0,-41.5102	0/1:85:42,43:42:1492:43:1511:-98.0265,0,-99.9013	1/1:27:0,27:0:0:27:968:-79.102,-8.12781,0	0/1:89:42,47:42:1512:47:1692:-110.813,0,-101.647	0/1:19:11,8:11:392:8:288:-15.8942,0,-25.3555	1/1:66:1,65:1:36:65:2310:-167.815,-16.7443,0	0/1:80:46,34:46:1629:34:1216:-65.7871,0,-103.767	1/1:76:0,76:0:0:76:2724:-212.316,-22.8783,0	0/1:190:80,110:80:2864:110:3933:-248.661,0,-173.864	0/1:56:34,22:34:1206:22:777:-46.815,0,-84.7022	1/1:81:0,81:0:0:81:2890:-231.642,-24.3834,0	1/1:81:0,81:0:0:81:2908:-234.835,-24.3834,0
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chr05	27921059	.	A	G	89316.1	PASS	AB=0.511119;ABP=6.05251;AC=137;AF=0.728723;AN=188;AO=4253;CIGAR=1X;DP=5663;DPB=5663;DPRA=0;EPP=9151.63;EPPR=3012.83;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.9861;MQMR=59.9815;NS=94;NUMALT=1;ODDS=2.49265;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151586;QR=50427;RO=1406;RPL=10;RPP=9151.63;RPPR=3012.83;RPR=4243;RUN=1;SAF=4253;SAP=9238.28;SAR=0;SRF=1406;SRP=3056.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	0/1:68:29,39:29:1040:39:1404:-106.189,0,-73.4443	1/1:71:0,71:0:0:71:2514:-226.509,-21.3731,0	1/1:157:0,157:0:0:157:5589:-503.132,-47.2617,0	0/1:53:30,23:30:1076:23:813:-57.5345,0,-81.1983	0/1:31:11,20:11:396:20:712:-55.0747,0,-26.6508	0/1:103:53,50:53:1895:50:1769:-128.485,0,-139.821	1/1:84:0,84:0:0:84:3011:-271.221,-25.2865,0	0/1:57:33,24:33:1184:24:864:-60.9239,0,-89.7096	1/1:68:0,68:0:0:68:2397:-215.984,-20.47,0	1/1:42:0,42:0:0:42:1480:-133.492,-12.6433,0	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	0/1:34:15,19:15:540:19:684:-51.6553,0,-38.7015	0/1:47:31,16:31:1116:16:560:-36.567,0,-86.6033	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	1/1:24:0,24:0:0:24:853:-77.0902,-7.22472,0	0/1:42:23,19:23:824:19:684:-49.2471,0,-61.8401	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	0/1:30:15,15:15:536:15:540:-39.9056,0,-39.5439	0/1:86:57,29:57:2048:29:1029:-67.0326,0,-158.617	0/1:89:42,47:42:1481:47:1661:-122.984,0,-106.791	0/1:101:66,35:66:2372:35:1260:-83.3015,0,-183.334	0/1:55:24,31:24:856:31:1078:-80.7677,0,-60.8045	1/1:103:3,100:3:108:100:3577:-312.061,-20.9309,0	1/1:64:0,63:0:0:63:2241:-201.593,-18.9649,0	1/1:146:0,146:0:0:146:5213:-469.309,-43.9504,0	1/1:155:0,155:0:0:155:5553:-499.892,-46.6597,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:150:63,87:63:2253:87:3102:-234.252,0,-157.877	1/1:82:3,78:3:108:78:2796:-241.804,-14.6681,0	1/1:91:0,91:0:0:91:3218:-289.843,-27.3937,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:89:59,30:59:2124:30:1076:-70.3612,0,-164.637	1/1:132:0,132:0:0:132:4688:-422.08,-39.736,0	1/1:40:0,40:0:0:40:1418:-127.916,-12.0412,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:49:23,26:23:816:26:907:-67.1917,0,-59.0112	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:117:67,50:67:2408:50:1786:-125.8,0,-181.756	0/1:27:9,18:9:324:18:648:-50.5241,0,-21.378	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:99:0,99:0:0:99:3548:-319.528,-29.802,0	0/1:57:25,32:25:892:32:1131:-84.9375,0,-63.441	1/1:90:2,88:2:72:88:3125:-274.639,-20.256,0	0/1:76:35,41:35:1241:41:1406:-103.95,0,-89.1142	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:143:66,77:66:2368:77:2747:-204.424,0,-170.331	0/1:13:3,10:3:108:10:340:-27.0135,0,-6.16178	0/1:73:47,26:47:1692:26:932:-62.2237,0,-130.592	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:24:10,14:10:360:14:489:-37.1142,0,-25.5196	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	0/1:51:15,36:15:536:36:1277:-99.8794,0,-33.2223	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:15:0,15:0:0:15:529:-47.9406,-4.51545,0	1/1:91:0,91:0:0:91:3230:-290.92,-27.3937,0	0/1:93:42,51:42:1512:51:1832:-137.165,0,-108.379	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:112:0,112:0:0:112:4001:-360.278,-33.7154,0	0/1:134:73,61:73:2628:61:2196:-157.567,0,-196.428	0/1:57:34,23:34:1220:23:828:-57.6854,0,-92.9481	0/1:37:13,24:13:464:24:856:-66.2224,0,-30.9594	1/1:79:0,79:0:0:79:2815:-253.588,-23.7814,0	1/1:87:2,85:2:72:85:3043:-267.262,-19.3529,0	0/0:14:13,1:13:468:1:36:0,-0.616145,-38.8614	0/1:59:22,37:22:792:37:1326:-101.881,0,-53.8449	0/1:57:26,31:26:936:31:1108:-82.8723,0,-67.4008	1/1:12:0,12:0:0:12:424:-38.4958,-3.61236,0	0/1:80:36,43:36:1273:43:1535:-114.301,0,-90.7299	1/1:54:0,54:0:0:54:1939:-174.786,-16.2556,0	1/1:123:0,123:0:0:123:4385:-394.821,-37.0267,0	1/1:71:0,71:0:0:71:2556:-230.29,-21.3731,0	0/1:76:36,40:36:1292:40:1440:-107.019,0,-93.6973	1/1:53:0,53:0:0:53:1876:-169.116,-15.9546,0	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	1/1:64:0,64:0:0:64:2266:-204.201,-19.2659,0	0/1:61:32,29:32:1148:29:1026:-74.2882,0,-85.267	0/1:126:39,87:39:1404:87:3071:-238.371,0,-88.7295	0/1:36:12,24:12:432:24:847:-65.7116,0,-28.3841	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2693	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:67:31,36:31:1116:36:1292:-96.4148,0,-80.5827	0/1:19:10,9:10:360:9:316:-23.0593,0,-27.0247	1/1:47:0,47:0:0:47:1670:-150.586,-14.1484,0	0/1:47:23,23:23:828:23:824:-60.2762,0,-60.6369	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:79:38,41:38:1368:41:1468:-108.635,0,-99.6395	0/1:30:17,13:17:612:13:460:-32.7039,0,-46.3825	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:36:0,36:0:0:36:1269:-114.511,-10.8371,0
chr05	27926495	.	C	A	32591.4	PASS	AB=0.497154;ABP=3.2328;AC=50;AF=0.265957;AN=188;AO=1588;CIGAR=1X;DP=6405;DPB=6405;DPRA=0.963477;EPP=1453.71;EPPR=4317.39;GTI=1;LEN=1;MEANALT=1.01667;MQM=59.9565;MQMR=59.972;NS=94;NUMALT=1;ODDS=2.41653;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56739;QR=171518;RO=4815;RPL=1309;RPP=1453.71;RPPR=4317.39;RPR=279;RUN=1;SAF=1588;SAP=3451.31;SAR=0;SRF=4815;SRP=10458.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.904	0/1:74:31,43:31:1108:43:1544:-116.977,0,-77.7548	0/0:158:157,0:157:5623:0:0:0,-47.2617,-505.83	0/0:172:172,0:172:6131:0:0:0,-51.7772,-551.882	0/1:66:30,36:30:1057:36:1276:-95.2751,0,-75.5664	0/1:34:23,11:23:815:11:396:-25.7477,0,-63.4357	0/1:75:28,47:28:1008:47:1671:-128.099,0,-68.4591	0/0:95:93,2:93:3311:2:72:0,-21.7611,-291.373	0/1:63:29,34:29:1024:34:1220:-91.1419,0,-73.5077	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:31:31,0:31:1084:0:0:0,-9.33193,-97.8661	0/0:75:75,0:75:2655:0:0:0,-22.5772,-239.194	0/1:49:28,21:28:972:21:756:-53.6168,0,-73.0387	0/1:45:33,12:33:1160:12:432:-25.6748,0,-91.1516	0/1:36:22,14:22:764:14:504:-34.861,0,-58.2397	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/1:56:34,22:34:1206:22:792:-54.748,0,-91.9868	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:21:6,15:6:216:15:536:-42.2532,0,-13.4689	0/1:84:32,52:32:1130:52:1853:-141.761,0,-76.7204	0/1:77:36,41:36:1288:41:1438:-106.462,0,-93.0443	0/1:65:21,44:21:740:44:1565:-121.573,0,-47.3564	0/1:61:28,33:28:1000:33:1184:-88.5055,0,-71.9525	0/0:98:93,4:93:3300:4:144:0,-16.2461,-283.905	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/0:255:255,0:255:9083:0:0:0,-76.7626,-817.424	0/0:147:147,0:147:5272:0:0:0,-44.2514,-474.615	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/1:180:107,73:107:3822:73:2609:-180.87,0,-289.991	0/0:109:106,3:106:3804:3:108:0,-22.7371,-332.482	0/0:68:67,1:67:2404:1:21:0,-18.3701,-214.517	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7449	0/1:138:62,76:62:2208:76:2728:-204.221,0,-157.44	0/0:169:169,0:169:6056:0:0:0,-50.8741,-545.142	0/0:49:48,1:48:1704:1:36:0,-11.1522,-150.045	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:70:36,34:36:1279:34:1196:-86.871,0,-94.3403	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.859	0/1:95:43,52:43:1544:52:1853:-138.451,0,-110.655	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/0:42:42,0:42:1484:0:0:0,-12.6433,-133.855	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.707	0/1:102:53,49:53:1896:49:1760:-127.979,0,-140.213	0/0:152:151,1:151:5364:1:36:0,-42.1583,-479.295	0/1:78:39,39:39:1400:39:1381:-101.106,0,-102.819	0/0:100:100,0:100:3557:0:0:0,-30.103,-320.338	0/1:141:93,48:93:3320:48:1716:-112.174,0,-256.574	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:111:65,46:65:2327:46:1652:-115.554,0,-176.275	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:84:84,0:84:2979:0:0:0,-25.2865,-268.344	0/1:45:25,20:25:892:20:720:-51.5824,0,-67.0533	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:46:46,0:46:1621:0:0:0,-13.8474,-146.14	0/1:103:51,52:51:1823:52:1849:-135.682,0,-133.299	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:136:136,0:136:4808:0:0:0,-40.9401,-432.877	0/1:124:69,55:69:2468:55:1972:-140.427,0,-185.046	0/1:50:27,23:27:963:23:828:-59.7926,0,-71.9344	0/1:61:29,32:29:1032:32:1152:-85.6273,0,-74.8306	0/0:107:106,1:106:3749:1:36:0,-28.6119,-334.011	0/0:77:76,1:76:2712:1:36:0,-19.581,-240.726	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:67:31,36:31:1100:36:1261:-93.6214,0,-79.1413	0/1:59:27,32:27:959:32:1148:-85.8691,0,-68.8646	0/0:16:16,0:16:560:0:0:0,-4.81648,-50.7287	0/1:84:44,40:44:1568:40:1421:-102.899,0,-116.125	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.088	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.927	0/0:98:98,0:98:3491:0:0:0,-29.5009,-314.402	0/1:94:41,53:41:1464:53:1896:-142.621,0,-103.759	0/0:58:57,1:57:2031:1:36:0,-13.8615,-179.464	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:72:72,0:72:2547:0:0:0,-21.6742,-229.482	0/1:68:25,43:25:900:43:1540:-118.423,0,-60.851	0/1:212:97,115:97:3468:115:4109:-306.175,0,-248.514	0/1:91:43,48:43:1544:48:1724:-128.052,0,-111.859	0/1:37:23,14:23:828:14:504:-34.56,0,-63.706	0/0:51:51,0:51:1810:0:0:0,-15.3525,-163.18	0/1:86:55,31:55:1958:31:1108:-74.1424,0,-150.606	0/1:29:13,16:13:459:16:576:-43.4451,0,-32.9142	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:59:34,25:34:1174:25:888:-62.4764,0,-88.199	0/1:37:10,27:10:360:27:972:-76.6598,0,-21.6062	0/0:58:57,1:57:2031:1:36:0,-13.8615,-179.464	0/0:83:83,0:83:2954:0:0:0,-24.9855,-266.093
chr05	27926507	.	A	G	100640	PASS	AB=0.499203;ABP=3.02761;AC=137;AF=0.728723;AN=188;AO=4775;CIGAR=1X;DP=6369;DPB=6369;DPRA=22.8172;EPP=10216;EPPR=3451.31;GTI=2;LEN=1;MEANALT=1.06452;MQM=59.9742;MQMR=59.9868;NS=94;NUMALT=1;ODDS=2.52477;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170144;QR=56958;RO=1588;RPL=4757;RPP=10216;RPPR=3451.31;RPR=18;RUN=1;SAF=4775;SAP=10371.8;SAR=0;SRF=1588;SRP=3451.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:73:41,32:41:1472:32:1148:-81.6546,0,-110.801	1/1:159:0,158:0:0:158:5646:-507.899,-47.5627,0	1/1:167:0,167:0:0:167:5937:-534.44,-50.272,0	0/1:63:34,29:34:1220:29:1040:-74.9449,0,-91.1419	0/1:37:11,25:11:396:25:860:-66.5139,0,-24.7858	0/1:74:47,27:47:1688:27:966:-64.981,0,-129.931	1/1:93:2,91:2:72:91:3240:-284.984,-21.1591,0	0/1:62:35,27:35:1256:27:963:-68.3221,0,-94.6814	1/1:72:0,72:0:0:72:2580:-232.413,-21.6742,0	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	1/1:75:0,75:0:0:75:2666:-240.185,-22.5773,0	0/1:49:22,27:22:788:27:968:-72.6869,0,-56.4943	0/1:45:12,33:12:423:33:1158:-90.9787,0,-24.8587	0/1:35:14,21:14:504:21:735:-55.9354,0,-35.162	1/1:41:1,40:1:36:40:1419:-124.408,-8.74396,0	0/1:55:22,33:22:779:33:1172:-89.2308,0,-53.8754	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:21:15,6:15:540:6:212:-13.1032,0,-42.6149	0/1:83:53,30:53:1904:30:1071:-71.7161,0,-146.639	0/1:76:40,36:40:1436:36:1274:-92.0837,0,-106.659	0/1:65:44,21:44:1584:21:752:-48.4393,0,-123.285	0/1:61:33,28:33:1180:28:1004:-72.313,0,-88.1452	1/1:99:4,95:4:144:95:3396:-292.542,-16.4884,0	1/1:49:0,49:0:0:49:1744:-157.243,-14.7505,0	1/1:257:0,256:0:0:256:9171:-825.082,-77.0637,0	1/1:148:0,148:0:0:148:5309:-477.941,-44.5524,0	0/1:16:8,8:8:288:8:279:-20.6311,0,-21.4509	0/1:181:75,105:75:2696:105:3753:-283.423,0,-188.338	1/1:109:3,106:3:108:106:3806:-332.662,-22.7371,0	1/1:65:0,65:0:0:65:2319:-208.969,-19.567,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7449,-1.80618,0	0/1:139:76,63:76:2724:63:2260:-161.819,0,-203.56	1/1:165:0,165:0:0:165:5854:-526.973,-49.67,0	1/1:48:1,47:1:36:47:1661:-146.177,-10.8512,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:68:33,35:33:1167:35:1251:-92.4242,0,-84.8664	1/1:39:0,39:0:0:39:1377:-124.228,-11.7402,0	0/1:94:51,43:51:1832:43:1544:-110.956,0,-136.864	0/1:34:17,17:17:612:17:608:-44.817,0,-45.1784	1/1:41:0,41:0:0:41:1423:-128.362,-12.3422,0	1/1:83:0,83:0:0:83:2925:-263.482,-24.9855,0	0/1:106:54,52:54:1925:52:1815:-131.719,0,-141.616	1/1:150:1,148:1:36:148:5301:-473.623,-41.615,0	0/1:78:40,38:40:1432:38:1360:-99.2203,0,-105.697	1/1:101:0,101:0:0:101:3596:-323.845,-30.404,0	0/1:140:47,93:47:1692:93:3325:-257.323,0,-110.423	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:113:48,65:48:1728:65:2328:-175.763,0,-121.789	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:85:0,85:0:0:85:3013:-271.403,-25.5876,0	0/1:43:20,23:20:720:23:824:-61.539,0,-52.1845	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:18:0,18:0:0:18:631:-57.1157,-5.41854,0	1/1:45:0,45:0:0:45:1587:-142.891,-13.5464,0	0/1:101:51,50:51:1824:50:1792:-131.158,0,-134.037	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:137:0,136:0:0:136:4827:-434.224,-40.9401,0	0/1:126:56,70:56:2016:70:2492:-186.601,0,-143.783	0/1:50:23,27:23:824:27:968:-72.3859,0,-59.4318	0/1:59:32,27:32:1140:27:968:-69.6766,0,-85.1484	1/1:107:1,106:1:36:106:3783:-337.071,-28.6119,0	1/1:77:1,76:1:36:76:2688:-238.566,-19.581,0	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/1:66:36,30:36:1288:30:1068:-76.5641,0,-96.3556	0/1:58:31,27:31:1116:27:964:-69.6171,0,-83.292	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:85:39,46:39:1392:46:1652:-123.381,0,-99.9915	1/1:50:0,50:0:0:50:1787:-160.684,-15.0515,0	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	1/1:98:0,98:0:0:98:3508:-315.929,-29.5009,0	0/1:93:52,41:52:1872:41:1451:-102.887,0,-140.763	1/1:58:1,57:1:36:57:2028:-179.194,-13.8615,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:73:0,73:0:0:73:2605:-234.698,-21.9752,0	0/1:70:45,25:45:1600:25:876:-58.0822,0,-123.218	0/1:210:114,96:114:4100:96:3440:-246.597,0,-305.967	0/1:89:48,41:48:1720:41:1463:-105.174,0,-128.294	0/1:35:14,21:14:504:21:752:-57.4702,0,-35.162	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	0/1:86:31,55:31:1116:55:1960:-150.787,0,-74.8631	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	1/1:50:0,50:0:0:50:1762:-158.862,-15.0515,0	0/1:36:17,19:17:612:19:676:-50.3309,0,-44.5764	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:54:24,30:24:864:30:1050:-78.5523,0,-61.8188	0/1:36:26,10:26:932:10:351:-21.0896,0,-73.3618	1/1:56:1,55:1:36:55:1968:-173.797,-13.2594,0	1/1:84:0,84:0:0:84:2968:-267.353,-25.2865,0
chr05	27953479	.	A	G	239740	PASS	AB=0.467444;ABP=61.4032;AC=138;AF=0.734043;AN=188;AO=9202;CIGAR=1X;DP=12630;DPB=12630;DPRA=33.9409;EPP=19984.9;EPPR=7433.79;GTI=1;LEN=1;MEANALT=1.02151;MQM=50.2332;MQMR=57.1106;NS=94;NUMALT=1;ODDS=2.81272;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=327045;QR=122553;RO=3426;RPL=4579;RPP=3.46715;RPPR=3.26383;RPR=4623;RUN=1;SAF=4579;SAP=3.46715;SAR=4623;SRF=1702;SRP=3.31707;SRR=1724;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1950:-174.445,-16.5567,0	0/1:182:104,78:104:3701:78:2779:-185.144,0,-276.366	1/1:266:0,266:0:0:266:9459:-840.702,-80.074,0	1/1:247:0,247:0:0:247:8781:-778.792,-74.3544,0	0/1:36:14,21:14:504:21:756:-56.4496,0,-34.7837	0/1:45:31,14:31:1112:14:504:-31.0051,0,-86.5966	0/1:153:72,81:72:2580:81:2904:-210.804,0,-186.232	1/1:216:0,216:0:0:216:7704:-667.125,-65.0225,0	0/1:141:69,72:69:2468:72:2566:-183.789,0,-179.798	1/1:154:0,154:0:0:154:5507:-486.521,-46.3586,0	1/1:70:0,70:0:0:70:2490:-219.907,-21.0721,0	1/1:137:0,137:0:0:137:4813:-422.215,-41.2411,0	0/1:106:49,57:49:1747:57:2027:-145.422,0,-125.387	0/1:157:78,79:78:2792:79:2820:-199.596,0,-203.923	0/1:95:47,48:47:1684:48:1706:-123.26,0,-123.116	1/1:76:0,76:0:0:76:2682:-237.141,-22.8783,0	0/1:112:58,54:58:2075:54:1930:-130.66,0,-152.503	1/1:94:2,92:2:72:92:3238:-272.465,-21.4773,0	0/1:34:12,22:12:428:22:771:-56.7687,0,-28.5745	0/1:325:168,157:168:6020:157:5598:-395.436,0,-443.476	0/1:256:166,90:166:5908:90:3166:-204.026,0,-454.522	0/1:109:84,25:84:3012:25:891:-47.3854,0,-238.383	0/1:89:49,40:49:1756:40:1428:-101.595,0,-131.418	1/1:103:7,96:7:252:96:3421:-279.752,-8.38084,0	1/1:82:1,81:1:36:81:2883:-252.672,-21.0862,0	1/1:373:1,372:1:36:372:13242:-1169.97,-108.687,0	1/1:337:0,337:0:0:337:11955:-1056.67,-101.447,0	0/1:59:28,31:28:1008:31:1108:-80.134,0,-73.2064	0/1:339:196,143:196:7032:143:5090:-351.913,0,-530.694	1/1:185:14,171:14:504:171:6072:-485.181,-10.047,0	1/1:142:0,141:0:0:141:5018:-443.076,-42.4452,0	0/1:18:8,10:8:284:10:360:-26.9332,0,-20.4766	1/1:23:0,23:0:0:23:804:-72.1516,-6.92369,0	1/1:10:0,10:0:0:10:345:-30.2305,-3.0103,0	1/1:14:0,14:0:0:14:500:-44.4841,-4.21442,0	1/1:16:0,16:0:0:16:572:-50.6679,-4.81648,0	0/1:256:127,129:127:4526:129:4576:-330.687,0,-329.641	1/1:180:1,179:1:36:179:6355:-551.311,-50.5871,0	1/1:73:0,73:0:0:73:2591:-223.086,-21.9752,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:173:77,96:77:2764:96:3397:-248.72,0,-196.584	1/1:30:0,30:0:0:30:1064:-93.5837,-9.0309,0	0/1:167:95,72:95:3393:72:2552:-177.583,0,-255.184	0/1:75:34,41:34:1220:41:1454:-106.49,0,-87.4063	1/1:79:1,78:1:27:78:2770:-241.688,-21.0816,0	1/1:99:0,99:0:0:99:3527:-314.835,-29.802,0	0/1:145:73,72:73:2608:72:2548:-178.419,0,-190.749	1/1:213:6,207:6:212:207:7380:-637.92,-44.7074,0	0/1:148:78,70:78:2788:70:2481:-175.75,0,-206.424	1/1:185:0,185:0:0:185:6612:-584.306,-55.6906,0	0/1:191:131,60:131:4704:60:2139:-133.47,0,-365.941	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4425	0/1:202:107,95:107:3836:95:3392:-238.088,0,-284.296	1/1:68:0,68:0:0:68:2418:-216.244,-20.47,0	0/1:25:12,13:12:428:13:440:-31.2763,0,-31.1006	1/1:193:0,193:0:0:193:6823:-603.944,-58.0988,0	0/1:49:33,16:33:1184:16:576:-37.0344,0,-92.0105	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:27:0,27:0:0:27:957:-85.4035,-8.12781,0	1/1:111:0,111:0:0:111:3960:-348.765,-33.4143,0	0/1:178:102,76:102:3656:76:2690:-184.259,0,-274.831	0/1:5:2,3:2:68:3:108:-8.48082,0,-4.95157	1/1:265:0,265:0:0:265:9456:-840.393,-79.773,0	0/1:250:147,103:147:5255:103:3660:-249.883,0,-397.117	0/1:163:65,98:65:2332:98:3476:-250.802,0,-160.369	0/1:94:52,42:52:1856:42:1499:-105.306,0,-138.943	1/1:208:5,203:5:180:203:7224:-626.12,-46.0693,0	1/1:162:0,162:0:0:162:5752:-510.166,-48.7669,0	0/1:55:31,24:31:1112:24:847:-57.6666,0,-83.7426	0/1:121:62,59:62:2199:59:2116:-148.903,0,-161.295	0/1:156:81,75:81:2881:75:2675:-189.784,0,-212.354	1/1:31:0,31:0:0:31:1086:-96.3398,-9.33193,0	0/1:175:83,92:83:2967:92:3207:-229.624,0,-214.109	1/1:128:0,128:0:0:128:4543:-396.934,-38.5318,0	1/1:202:1,201:1:36:201:7139:-623.668,-57.2188,0	1/1:292:0,292:0:0:292:10418:-928.119,-87.9008,0	0/1:89:51,38:51:1832:38:1360:-91.6382,0,-138.022	1/1:288:5,283:5:180:283:10050:-857.561,-70.1529,0	0/1:19:11,8:11:392:8:284:-19.9915,0,-29.8923	1/1:174:1,173:1:36:173:6135:-537.04,-48.7809,0	0/1:198:87,111:87:3108:111:3946:-287.85,0,-219.982	0/1:319:173,146:173:6203:146:5182:-362.125,0,-461.529	0/1:108:58,50:58:2076:50:1770:-124.971,0,-154.167	0/1:114:48,66:48:1724:66:2338:-173.404,0,-120.949	1/1:115:0,115:0:0:115:4065:-357.656,-34.6185,0	0/1:213:98,115:98:3498:115:4081:-298.534,0,-250.539	0/1:36:20,16:20:716:16:576:-39.2377,0,-53.8127	1/1:110:0,110:0:0:110:3916:-339.753,-33.1133,0	0/1:96:55,41:55:1967:41:1456:-97.8469,0,-148.071	1/1:88:0,88:0:0:88:3108:-270.371,-26.4906,0	0/1:163:83,80:83:2976:80:2809:-197.81,0,-218.614	0/1:97:63,34:63:2242:34:1220:-79.3676,0,-172.728	1/1:209:0,209:0:0:209:7491:-667.654,-62.9153,0	1/1:150:0,150:0:0:150:5330:-473.042,-45.1545,0
chr05	27965390	.	A	G	49793.2	PASS	AB=0.5034;ABP=3.60098;AC=50;AF=0.265957;AN=188;AO=2982;CIGAR=1X;DP=13119;DPB=13119;DPRA=1.04623;EPP=6434.98;EPPR=21777;GTI=0;LEN=1;MEANALT=1.0339;MQM=50.9916;MQMR=59.4849;NS=94;NUMALT=1;ODDS=15.8042;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106681;QR=363415;RO=10135;RPL=5;RPP=6434.98;RPPR=21777;RPR=2977;RUN=1;SAF=2982;SAP=6478.34;SAR=0;SRF=10135;SRP=22010.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.602	0/1:81:43,38:43:1532:38:1351:-96.4937,0,-113.737	0/0:226:226,0:226:8112:0:0:0,-68.0328,-729.958	0/0:268:268,0:268:9613:0:0:0,-80.676,-864.945	0/1:77:46,31:46:1656:31:1112:-76.5439,0,-126.138	0/1:34:23,11:23:813:11:392:-25.2005,0,-63.2535	0/1:85:54,31:54:1917:31:1108:-73.7702,0,-146.972	0/0:314:313,1:313:11236:1:36:0,-90.9446,-1007.27	0/1:157:61,96:61:2188:96:3422:-258.617,0,-149.825	0/0:84:84,0:84:2993:0:0:0,-25.2865,-269.502	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.672	0/0:142:142,0:142:5112:0:0:0,-42.7463,-460.019	0/1:146:86,60:86:3096:60:2160:-148.461,0,-234.87	0/1:103:53,49:53:1904:49:1764:-126.222,0,-140.291	0/1:116:49,67:49:1764:67:2408:-180.824,0,-124.112	0/0:74:74,0:74:2664:0:0:0,-22.2762,-239.955	0/1:39:18,21:18:648:21:755:-55.7769,0,-46.9117	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.66	0/1:60:33,27:33:1184:27:956:-67.6975,0,-88.7713	0/1:142:70,71:70:2516:71:2521:-183.239,0,-183.875	0/1:294:131,163:131:4699:163:5839:-433.92,0,-333.745	0/1:85:32,53:32:1137:53:1904:-145.854,0,-77.0285	0/1:207:111,96:111:3969:96:3448:-247.11,0,-294.676	0/0:86:80,6:80:2868:6:216:0,-6.17,-238.549	0/0:104:104,0:104:3709:0:0:0,-31.3071,-333.914	0/0:328:328,0:328:11741:0:0:0,-98.7378,-1056.49	0/0:380:378,2:378:13569:2:72:0,-107.577,-1213.67	0/1:43:20,23:20:720:23:828:-61.4201,0,-52.1845	0/1:331:177,154:177:6333:154:5518:-394.634,0,-470.394	0/0:182:179,3:179:6417:3:108:0,-44.7525,-567.452	0/0:194:194,0:194:6956:0:0:0,-58.3998,-625.826	0/1:48:28,20:28:1008:20:720:-50.2509,0,-76.5549	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.752	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.902	0/0:65:65,0:65:2304:0:0:0,-19.5669,-206.378	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.056	0/1:204:118,86:118:4240:86:3079:-215.184,0,-319.485	0/0:238:238,0:238:8533:0:0:0,-71.6451,-767.653	0/0:99:99,0:99:3564:0:0:0,-29.802,-320.912	0/1:16:8,8:8:288:8:288:-21.3302,0,-21.4509	0/1:116:66,50:66:2368:50:1787:-124.613,0,-178.426	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.753	0/1:216:95,121:95:3378:121:4312:-320.667,0,-239.201	0/1:76:28,48:28:1004:48:1709:-130.468,0,-66.9393	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.692	0/0:218:217,1:217:7785:1:36:0,-62.03,-697.04	0/1:149:76,73:76:2732:73:2580:-185.636,0,-201.269	0/0:392:391,1:391:14021:1:36:0,-114.412,-1257.5	0/1:114:51,63:51:1832:63:2256:-168.21,0,-130.69	0/0:484:481,3:481:17251:3:108:0,-135.643,-1541.96	0/1:27:18,9:18:644:9:324:-21.3476,0,-50.1561	0/1:29:12,17:12:432:17:608:-46.0683,0,-30.4913	0/1:121:53,68:53:1904:68:2432:-181.237,0,-135.187	0/0:87:87,0:87:3101:0:0:0,-26.1896,-279.306	0/1:21:6,15:6:216:15:540:-42.2607,0,-13.4689	0/0:170:170,0:170:6112:0:0:0,-51.1751,-549.757	0/1:69:33,36:33:1184:36:1273:-93.7332,0,-86.0454	0/1:30:17,13:17:612:13:464:-32.8153,0,-46.3825	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5561	0/0:233:233,0:233:8338:0:0:0,-70.14,-750.178	0/1:104:57,47:57:2052:47:1680:-119.291,0,-153.589	0/1:49:29,20:29:1040:20:716:-49.8581,0,-79.1577	0/0:202:202,0:202:7244:0:0:0,-60.8081,-651.978	0/1:414:203,211:203:7280:211:7553:-553.187,0,-530.088	0/1:112:47,65:47:1669:65:2324:-174.875,0,-116.767	0/1:76:41,35:41:1476:35:1247:-89.4445,0,-110.24	0/0:261:260,1:260:9306:1:36:0,-74.9774,-833.686	0/0:198:198,0:198:7104:0:0:0,-59.6039,-639.343	0/1:75:41,34:41:1476:34:1216:-86.5901,0,-110.35	0/1:74:45,29:45:1620:29:1028:-70.0355,0,-123.8	0/1:66:37,29:37:1317:29:1044:-74.2068,0,-98.9552	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.956	0/1:183:88,95:88:3164:95:3401:-248.421,0,-229.877	0/0:180:180,0:180:6456:0:0:0,-54.1854,-580.19	0/0:366:366,0:366:13121:0:0:0,-110.177,-1178.85	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.316	0/1:213:102,111:102:3656:111:3955:-289.861,0,-265.085	0/0:173:170,3:170:6092:3:108:0,-42.0576,-538.203	0/1:71:24,47:24:856:47:1684:-128.806,0,-55.9834	0/0:120:120,0:120:4301:0:0:0,-36.1236,-387.085	0/1:135:62,73:62:2198:73:2616:-192.019,0,-157.16	0/1:340:195,145:195:6981:145:5192:-363.929,0,-524.638	0/1:65:31,34:31:1108:34:1216:-89.798,0,-79.8931	0/1:102:44,58:44:1584:58:2084:-156.467,0,-112.146	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.012	0/1:177:84,93:84:3005:93:3336:-245.952,0,-217.366	0/1:28:12,16:12:432:16:572:-42.3357,0,-30.7569	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.061	0/1:81:36,45:36:1296:45:1620:-120.496,0,-91.2856	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.343	0/1:178:90,88:90:3240:88:3143:-227.715,0,-238.194	0/1:103:35,68:35:1256:68:2440:-188.23,0,-82.3243	0/0:163:163,0:163:5860:0:0:0,-49.0679,-527.367	0/0:151:151,0:151:5424:0:0:0,-45.4555,-488.088
chr05	27977510	.	TAGG	GAGG,GAGA	146577	PASS	AB=0.506869,0.485562;ABP=4.47195,9.46871;AC=136,50;AF=0.731183,0.268817;AN=186;AO=5077,1750;CIGAR=1X3M,1X2M1X;DP=6871;DPB=6871;DPRA=14.9261,1.24832;EPP=10871.8,3785.74;EPPR=3.32051;GTI=2;LEN=1,4;MEANALT=1.97826,2.43636;MQM=59.7607,53.5451;MQMR=60;NS=93;NUMALT=2;ODDS=0.279013;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=181446,62071;QR=249;RO=7;RPL=5059,2;RPP=10871.8,3785.74;RPPR=3.32051;RPR=18,1748;RUN=1,1;SAF=0,0;SAP=11027.6,3803.09;SAR=5077,1750;SRF=0;SRP=18.2106;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:67:1,41,25:1:36:41,25:1456,887:-187.018,-68.6811,-59.2766,-115.694,0,-111.106	1/1:140:0,140,0:0:0:140,0:5017,0:-451.591,-42.1442,0,-451.591,-42.1442,-451.591	1/1:180:1,174,2:1:36:174,2:6221,72:-556.233,-49.4404,0,-550.663,-46.5057,-552.999	1/2:42:0,21,21:0:0:21,21:756,737:-121.82,-60.1359,-53.8142,-62.0394,0,-55.7178	1/2:48:0,19,28:0:0:19,28:672,986:-134.731,-80.002,-74.2824,-54.7844,0,-46.3556	1/2:77:0,28,49:0:0:28,49:1004,1746:-224.134,-142.263,-133.834,-82.2284,0,-67.478	1/1:125:0,123,0:0:0:123,0:4380,0:-393.962,-37.0267,0,-393.962,-37.0267,-393.962	1/2:87:0,38,49:0:0:38,49:1343,1740:-250.482,-141.129,-129.69,-109.706,0,-94.9554	1/1:69:0,68,0:0:0:68,0:2426,0:-217.59,-20.47,0,-217.59,-20.47,-217.59	1/1:42:0,42,0:0:0:42,0:1504,0:-135.64,-12.6433,0,-135.64,-12.6433,-135.64	1/1:93:0,92,0:0:0:92,0:3287,0:-295.676,-27.6948,0,-295.676,-27.6948,-295.676	1/2:69:1,34,33:1:36:34,33:1224,1162:-190.947,-91.3773,-84.0799,-96.9286,0,-89.932	1/2:50:0,25,25:0:0:25,25:896,871:-143.536,-70.4525,-62.9268,-73.4346,0,-65.9089	1/2:67:0,24,41:0:0:24,41:852,1445:-186.88,-117.458,-110.233,-69.4349,0,-57.0927	1/1:44:0,44,0:0:0:44,0:1561,0:-140.752,-13.2453,0,-140.752,-13.2453,-140.752	1/2:30:0,21,9:0:0:21,9:747,323:-87.5026,-26.6333,-20.3117,-61.2265,0,-58.5172	1/1:39:0,38,0:0:0:38,0:1359,0:-122.316,-11.4391,0,-122.316,-11.4391,-122.316	1/2:32:0,18,14:0:0:18,14:648,502:-92.9257,-40.0458,-34.6273,-53.2333,0,-49.0189	1/2:150:0,78,71:0:0:78,71:2792,2531:-433.227,-205.549,-182.069,-227.675,0,-206.302	1/2:167:0,80,87:0:0:80,87:2852,3088:-482.542,-250.075,-225.993,-232.821,0,-206.632	1/2:76:0,9,66:0:0:9,66:320,2349:-216.611,-190.533,-187.824,-26.0843,0,-6.2163	1/2:115:0,47,67:0:0:47,67:1672,2362:-327.127,-191.058,-176.909,-136.072,0,-115.903	1/2:22:0,18,4:0:0:18,4:648,144:-64.9584,-12.0906,-6.67208,-53.2271,0,-52.023	1/1:44:0,44,0:0:0:44,0:1580,0:-142.492,-13.2453,0,-142.492,-13.2453,-142.492	1/1:160:0,158,1:0:0:158,1:5642,36:-507.309,-47.5627,0,-504.375,-44.5738,-504.074	1/1:172:0,170,0:0:0:170,0:6088,0:-547.637,-51.1751,0,-547.637,-51.1751,-547.637	1/2:45:0,22,23:0:0:22,23:792,811:-130.891,-66.2696,-59.647,-64.9768,0,-58.0531	1/2:186:0,88,97:0:0:88,97:3160,3430:-536.644,-278.868,-252.377,-257.773,0,-228.573	1/1:75:0,73,2:0:0:73,2:2603,72:-234.151,-21.9752,0,-228.303,-15.769,-227.701	1/1:62:0,62,0:0:0:62,0:2224,0:-200.405,-18.6639,0,-200.405,-18.6639,-200.405	1/2:7:0,5,2:0:0:5,2:180,71:-20.8223,-6.13129,-4.62614,-15.0469,0,-14.4449	1/1:15:0,14,0:0:0:14,0:504,0:-45.3943,-4.21442,0,-45.3943,-4.21442,-45.3943	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:12:0,12,0:0:0:12,0:423,0:-38.4051,-3.61236,0,-38.4051,-3.61236,-38.4051	1/2:177:0,85,90:0:0:85,90:3047,3194:-508.437,-259.928,-234.34,-248.588,0,-221.495	1/1:58:1,57,0:1:36:57,0:2024,0:-178.829,-13.8615,0,-179.13,-17.1587,-182.067	1/1:42:0,42,0:0:0:42,0:1512,0:-136.375,-12.6433,0,-136.375,-12.6433,-136.375	.:.:.:.:.:.:.:.	1/2:91:1,52,37:1:36:52,37:1850,1321:-254.726,-104.278,-91.5619,-147.814,0,-139.613	1/1:38:0,38,0:0:0:38,0:1368,0:-123.415,-11.4391,0,-123.415,-11.4391,-123.415	1/2:179:0,118,57:0:0:118,57:4224,2024:-508.809,-164.349,-128.828,-344.516,0,-327.357	1/2:55:0,31,23:0:0:31,23:1116,824:-158.048,-66.9924,-57.6604,-91.0544,0,-84.1307	1/1:50:0,50,0:0:0:50,0:1784,0:-160.83,-15.0515,0,-160.83,-15.0515,-160.83	1/1:91:0,91,0:0:0:91,0:3264,0:-293.776,-27.3937,0,-293.776,-27.3937,-293.776	1/2:117:0,43,74:0:0:43,74:1535,2624:-338.013,-212.924,-199.98,-125.444,0,-103.168	1/1:156:0,155,0:0:0:155,0:5547,0:-498.976,-46.6597,0,-498.976,-46.6597,-498.976	1/2:59:0,19,40:0:0:19,40:684,1410:-170.556,-114.742,-109.023,-56.1708,0,-44.1296	1/1:108:0,108,0:0:0:108,0:3884,0:-349.753,-32.5112,0,-349.753,-32.5112,-349.753	1/2:89:0,51,38:0:0:51,38:1804,1361:-257.953,-111.028,-95.675,-147.281,0,-135.842	1/1:9:0,9,0:0:0:9,0:316,0:-28.7789,-2.70927,0,-28.7789,-2.70927,-28.7789	1/2:85:2,52,31:2:69:52,31:1872,1093:-234.758,-82.6084,-72.5602,-147.155,0,-143.428	1/1:75:0,75,0:0:0:75,0:2683,0:-241.706,-22.5773,0,-241.706,-22.5773,-241.706	1/2:4:0,3,1:0:0:3,1:108,36:-12.1011,-3.2882,-2.38511,-9.17208,0,-8.87105	1/1:105:0,104,0:0:0:104,0:3708,0:-333.345,-31.3071,0,-333.345,-31.3071,-333.345	1/2:31:0,9,21:0:0:9,21:324,746:-86.8581,-60.4195,-57.7102,-26.4374,0,-20.1157	1/2:7:0,3,4:0:0:3,4:108,144:-20.9063,-12.0939,-11.1908,-9.17208,0,-7.96796	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:39:0,39,0:0:0:39,0:1400,0:-126.293,-11.7402,0,-126.293,-11.7402,-126.293	1/2:64:0,29,34:0:0:29,34:1035,1213:-182.968,-98.5971,-89.8672,-84.3765,0,-74.1415	2/2:5:0,0,5:0:0:0,5:0,166:-15.2559,-15.2559,-15.2559,-1.50515,-1.50515,0	1/1:144:0,144,0:0:0:144,0:5143,0:-463.012,-43.3483,0,-463.012,-43.3483,-463.012	1/2:116:0,73,43:0:0:73,43:2603,1522:-335.995,-123.812,-101.837,-212.537,0,-199.593	1/2:35:0,18,17:0:0:18,17:644,608:-102.375,-49.8598,-44.4413,-52.8721,0,-47.7545	1/2:50:0,35,15:0:0:35,15:1248,538:-145.86,-44.1376,-33.6015,-102.08,0,-97.5647	1/1:105:0,105,0:0:0:105,0:3736,0:-336.435,-31.6082,0,-336.435,-31.6082,-336.435	1/1:213:0,209,4:0:0:209,4:7452,136:-670.373,-62.9153,0,-659.346,-51.5485,-658.142	1/2:26:0,13,12:0:0:13,12:468,428:-73.0822,-34.8931,-30.9797,-38.2443,0,-34.6319	1/2:43:0,16,27:0:0:16,27:572,964:-125.185,-78.5446,-73.7281,-46.9969,0,-38.8691	1/2:48:0,27,21:0:0:27,21:951,753:-138.842,-61.6925,-53.5646,-77.504,0,-71.1824	1/1:23:0,22,0:0:0:22,0:788,0:-70.8857,-6.62266,0,-70.8857,-6.62266,-70.8857	1/2:68:0,44,24:0:0:44,24:1564,857:-197.26,-69.809,-56.5636,-127.806,0,-120.582	1/1:55:0,55,0:0:0:55,0:1964,0:-177.029,-16.5567,0,-177.029,-16.5567,-177.029	1/1:112:0,112,0:0:0:112,0:3998,0:-359.807,-33.7154,0,-359.807,-33.7154,-359.807	1/1:134:0,131,3:0:0:131,3:4700,108:-422.787,-39.4349,0,-413.986,-30.2741,-413.083	1/2:127:0,72,55:0:0:72,55:2555,1951:-367.009,-158.845,-137.171,-208.518,0,-191.961	1/1:59:0,59,0:0:0:59,0:2102,0:-189.436,-17.7608,0,-189.436,-17.7608,-189.436	1/2:7:0,4,3:0:0:4,3:144,108:-20.8969,-9.14675,-7.94263,-12.1095,0,-11.2064	1/1:62:0,62,0:0:0:62,0:2204,0:-198.619,-18.6639,0,-198.619,-18.6639,-198.619	1/2:115:0,65,50:0:0:65,50:2323,1756:-331.932,-142.542,-122.975,-189.743,0,-174.691	1/2:146:0,104,41:0:0:104,41:3724,1438:-419.923,-116.226,-84.9191,-303.729,0,-291.387	1/2:53:0,29,24:0:0:29,24:1040,860:-155.252,-70.4255,-61.6956,-85.1845,0,-77.9598	1/2:73:0,28,45:0:0:28,45:1008,1604:-213.076,-130.826,-122.398,-82.6075,0,-69.0612	1/1:52:0,52,0:0:0:52,0:1846,0:-166.418,-15.6536,0,-166.418,-15.6536,-166.418	1/2:127:0,68,59:0:0:68,59:2427,2078:-366.962,-169.107,-148.636,-198.209,0,-180.448	1/2:27:0,14,12:0:0:14,12:504,423:-75.538,-34.4075,-30.1931,-41.1856,0,-37.5733	1/1:47:0,47,0:0:0:47,0:1680,0:-151.481,-14.1484,0,-151.481,-14.1484,-151.481	1/2:62:0,31,31:0:0:31,31:1116,1114:-181.688,-90.6267,-81.2948,-91.4198,0,-82.0878	1/1:42:0,42,0:0:0:42,0:1499,0:-135.078,-12.6433,0,-135.078,-12.6433,-135.078	1/2:69:0,33,36:0:0:33,36:1188,1292:-202.321,-105.391,-95.4571,-97.2884,0,-86.4513	1/2:80:0,23,56:0:0:23,56:819,1976:-227.51,-160.757,-153.834,-66.7482,0,-49.8905	1/1:92:0,92,0:0:0:92,0:3286,0:-295.951,-27.6948,0,-295.951,-27.6948,-295.951	1/1:89:0,88,1:0:0:88,1:3160,36:-284.246,-26.4906,0,-281.311,-23.196,-281.01
chr05	27977523	.	ATG	CTG,CTA	145067	PASS	AB=0.503966,0.494618;ABP=3.49258,3.89857;AC=136,50;AF=0.731183,0.268817;AN=186;AO=4985,1763;CIGAR=1X2M,1X1M1X;DP=6754;DPB=6774.67;DPRA=14.6717,1.26647;EPP=10680.6,3805.3;EPPR=9.52472;GTI=1;LEN=1,3;MEANALT=1.61957,2.03636;MQM=59.7525,53.4861;MQMR=60;NS=93;NUMALT=2;ODDS=0.661488;PAIRED=0,0;PAIREDR=0;PAO=31,31;PQA=1106,1106;PQR=0;PRO=0;QA=178155,62400;QR=91;RO=3;RPL=4966,3;RPP=10663.4,3805.3;RPPR=9.52472;RPR=19,1760;RUN=1,1;SAF=2,0;SAP=10810.4,3831.32;SAR=4983,1763;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9,0:0:0:9,0:324,0:-29.4996,-2.70927,0,-29.4996,-2.70927,-29.4996	1/2:64:0,39,25:0:0:39,25:1388,888:-185.144,-72.0183,-60.2782,-113.479,0,-105.953	1/1:135:0,135,0:0:0:135,0:4829,0:-434.43,-40.6391,0,-434.43,-40.6391,-434.43	1/1:173:1,170,2:1:21:170,2:6081,72:-545.065,-49.6762,0,-539.495,-45.3657,-540.481	1/2:42:0,21,21:0:0:21,21:752,738:-121.528,-60.204,-53.8824,-61.6784,0,-55.3568	1/2:48:0,19,29:0:0:19,29:684,1026:-139.225,-83.4172,-77.6976,-56.1646,0,-47.4347	1/2:78:0,29,49:0:0:29,49:1036,1752:-227.17,-142.713,-133.984,-84.8129,0,-70.0624	1/1:119:0,119,0:0:0:119,0:4233,0:-380.67,-35.8226,0,-380.67,-35.8226,-380.67	1/2:87:0,38,49:0:0:38,49:1349,1739:-251.041,-141.16,-129.721,-110.235,0,-95.485	1/1:67:0,67,0:0:0:67,0:2354,0:-211.82,-20.169,0,-211.82,-20.169,-211.82	1/1:42:0,42,0:0:0:42,0:1478,0:-133.233,-12.6433,0,-133.233,-12.6433,-133.233	1/1:90:0,90,0:0:0:90,0:3220,0:-289.883,-27.0927,0,-289.883,-27.0927,-289.883	1/2:69:0,34,35:0:0:34,35:1220,1223:-199.081,-99.5692,-89.3342,-99.8656,0,-89.3295	1/2:49:0,24,25:0:0:24,25:856,883:-141.116,-71.334,-64.1093,-70.0787,0,-62.553	1/2:68:0,26,42:0:0:26,42:932,1470:-195.76,-119.749,-111.922,-76.3659,0,-63.7226	1/1:42:0,42,0:0:0:42,0:1500,0:-135.228,-12.6433,0,-135.228,-12.6433,-135.228	1/2:30:0,21,9:0:0:21,9:752,314:-87.1476,-25.8201,-19.4985,-61.6784,0,-58.9692	1/1:38:0,38,0:0:0:38,0:1345,0:-121.33,-11.4391,0,-121.33,-11.4391,-121.33	1/2:32:0,18,14:0:0:18,14:648,504:-93.1024,-40.2233,-34.8047,-53.2333,0,-49.0189	1/2:148:0,77,71:0:0:77,71:2756,2529:-430.406,-205.672,-182.493,-225.09,0,-203.717	1/2:163:0,77,86:0:0:77,86:2764,3056:-473.836,-248.383,-225.203,-225.809,0,-199.921	1/2:78:0,11,67:0:0:11,67:396,2373:-224.954,-192.642,-189.33,-32.6714,0,-12.5024	1/2:113:0,45,68:0:0:45,68:1612,2375:-323.352,-192.086,-178.54,-131.561,0,-111.091	1/2:22:0,18,4:0:0:18,4:644,144:-64.5975,-12.0906,-6.67208,-52.8659,0,-51.6617	1/1:45:0,45,0:0:0:45,0:1601,0:-144.319,-13.5464,0,-144.319,-13.5464,-144.319	1/1:154:0,153,1:0:0:153,1:5436,36:-488.704,-46.0576,0,-485.77,-42.7641,-485.469	1/1:168:0,168,0:0:0:168,0:6005,0:-540.478,-50.573,0,-540.478,-50.573,-540.478	1/2:42:0,19,23:0:0:19,23:680,824:-122.876,-67.4301,-61.7105,-55.8034,0,-48.8797	1/2:185:0,86,99:0:0:86,99:3073,3484:-533.178,-282.632,-256.744,-250.782,0,-220.98	1/1:77:0,75,2:0:0:75,2:2670,72:-240.172,-22.5773,0,-234.324,-16.371,-233.722	1/1:58:0,58,0:0:0:58,0:2076,0:-187.028,-17.4597,0,-187.028,-17.4597,-187.028	1/2:7:0,5,2:0:0:5,2:180,72:-20.9124,-6.22497,-4.71982,-15.0469,0,-14.4449	1/1:15:0,15,0:0:0:15,0:540,0:-48.9303,-4.51545,0,-48.9303,-4.51545,-48.9303	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:11:0,11,0:0:0:11,0:396,0:-35.928,-3.31133,0,-35.928,-3.31133,-35.928	1/2:178:0,86,92:0:0:86,92:3058,3290:-517.412,-268.222,-242.333,-249.546,0,-221.851	1/1:55:0,55,0:0:0:55,0:1965,0:-176.881,-16.5567,0,-176.881,-16.5567,-176.881	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	.:.:.:.:.:.:.:.	1/2:88:0,50,38:0:0:50,38:1788,1346:-255.184,-109.393,-94.3417,-146.145,0,-134.706	1/1:37:0,37,0:0:0:37,0:1332,0:-120.176,-11.1381,0,-120.176,-11.1381,-120.176	1/2:179:0,118,61:0:0:118,61:4224,2156:-519.61,-175.152,-139.63,-344.753,0,-326.39	1/2:54:0,31,23:0:0:31,23:1116,828:-158.742,-67.6937,-58.3618,-91.4074,0,-84.4837	1/1:52:0,52,0:0:0:52,0:1864,0:-168.027,-15.6536,0,-168.027,-15.6536,-168.027	1/1:90:0,90,0:0:0:90,0:3220,0:-289.669,-27.0927,0,-289.669,-27.0927,-289.669	1/2:114:0,40,74:0:0:40,74:1428,2620:-329.026,-212.618,-200.576,-116.705,0,-94.4291	1/1:156:0,156,0:0:0:156,0:5578,0:-502.115,-46.9607,0,-502.115,-46.9607,-502.115	1/2:59:0,19,40:0:0:19,40:684,1418:-170.937,-115.124,-109.404,-56.1708,0,-44.1296	1/1:106:0,106,0:0:0:106,0:3804,0:-342.497,-31.9092,0,-342.497,-31.9092,-342.497	1/2:86:0,48,37:0:0:48,37:1716,1306:-245.82,-105.908,-91.4584,-139.791,0,-128.653	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:84:2,51,31:2:70:51,31:1821,1076:-228.926,-81.0621,-71.4052,-142.743,0,-139.106	1/1:74:0,74,0:0:0:74,0:2656,0:-239.284,-22.2762,0,-239.284,-22.2762,-239.284	1/2:4:0,3,1:0:0:3,1:108,36:-12.1011,-3.2882,-2.38511,-9.17208,0,-8.87105	1/1:103:0,103,0:0:0:103,0:3688,0:-331.91,-31.0061,0,-331.91,-31.0061,-331.91	1/2:31:0,10,21:0:0:10,21:352,739:-89.0276,-60.3774,-57.3671,-29.0017,0,-22.68	1/2:7:0,4,3:0:0:4,3:140,100:-19.8135,-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chr05	27977934	.	C	T	107523	PASS	AB=0.462478;ABP=44.0756;AC=138;AF=0.741935;AN=186;AO=5109;CIGAR=1X;DP=6927;DPB=6927;DPRA=0;EPP=11097.1;EPPR=3946.4;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.9589;MQMR=59.3618;NS=93;NUMALT=1;ODDS=3.57821;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182819;QR=64867;RO=1816;RPL=5109;RPP=11097.1;RPPR=3946.4;RPR=0;RUN=1;SAF=0;SAP=11097.1;SAR=5109;SRF=0;SRP=3946.4;SRR=1816;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:64:36,28:36:1284:28:989:-70.0557,0,-96.2435	1/1:99:0,99:0:0:99:3541:-318.897,-29.802,0	1/1:132:0,132:0:0:132:4713:-424.324,-39.736,0	0/1:22:15,7:15:536:7:252:-16.4063,0,-41.8963	0/1:22:13,9:13:468:9:316:-22.1562,0,-35.837	0/1:39:20,19:20:697:19:684:-50.1502,0,-51.2891	1/1:110:0,110:0:0:110:3884:-349.752,-33.1133,0	0/1:92:47,45:47:1688:45:1620:-118.395,0,-124.512	1/1:107:0,107:0:0:107:3852:-346.874,-32.2102,0	1/1:75:0,75:0:0:75:2673:-240.814,-22.5773,0	1/1:94:0,94:0:0:94:3361:-302.336,-28.2968,0	0/1:80:40,40:40:1440:40:1440:-105.815,0,-105.711	0/1:90:45,45:45:1616:45:1616:-118.637,0,-118.627	0/1:98:53,44:53:1900:44:1584:-113.292,0,-141.696	1/1:70:0,70:0:0:70:2509:-226.059,-21.0721,0	0/1:56:25,31:25:892:31:1109:-83.2631,0,-63.657	1/1:41:1,40:1:36:40:1436:-125.939,-8.74396,0	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/1:103:50,53:50:1776:53:1900:-140.264,0,-129.087	0/1:120:67,53:67:2396:53:1881:-133.443,0,-179.335	0/1:82:64,18:64:2270:18:648:-33.9674,0,-179.191	0/1:75:45,30:45:1608:30:1076:-74.5756,0,-122.236	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:188:0,188:0:0:188:6729:-605.683,-56.5936,0	1/1:144:0,144:0:0:144:5168:-465.259,-43.3483,0	0/1:26:11,15:11:392:15:540:-41.1098,0,-27.7933	0/1:179:95,84:95:3392:84:2986:-215.085,0,-251.491	1/1:113:3,110:3:108:110:3930:-343.814,-23.9412,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	0/1:23:10,13:10:360:13:449:-33.8031,0,-25.8206	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:145:59,86:59:2120:86:3088:-234.497,0,-147.4	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	.:.:.:.:.:.:.:.	0/1:83:48,35:48:1724:35:1256:-88.3598,0,-130.445	1/1:93:0,93:0:0:93:3325:-299.466,-27.9958,0	0/1:125:88,37:88:3139:37:1328:-82.0637,0,-244.998	0/1:39:13,26:13:464:26:932:-72.3287,0,-30.3449	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:71:47,24:47:1692:24:860:-56.3487,0,-131.131	1/1:103:0,103:0:0:103:3674:-330.861,-31.0061,0	0/1:146:76,70:76:2713:70:2497:-181.023,0,-200.447	1/1:115:0,115:0:0:115:4106:-369.721,-34.6185,0	0/1:74:41,33:41:1457:33:1188:-84.9524,0,-109.132	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0637	0/1:86:39,47:39:1400:47:1679:-125.508,0,-100.409	1/1:71:0,71:0:0:71:2537:-228.58,-21.3731,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:93:0,93:0:0:93:3326:-299.548,-27.9958,0	0/1:17:3,14:3:108:14:500:-40.2187,0,-4.95766	0/1:20:10,10:10:356:10:360:-26.7237,0,-26.3606	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:102:0,102:0:0:102:3655:-329.154,-30.7051,0	0/1:94:47,47:47:1684:47:1684:-123.55,0,-123.487	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:125:1,124:1:36:124:4441:-396.26,-34.0305,0	0/1:62:34,28:34:1224:28:1004:-72.0116,0,-91.797	0/1:75:39,36:39:1400:36:1258:-90.941,0,-103.71	0/1:34:22,12:22:792:12:432:-28.9862,0,-61.3707	1/1:96:4,92:4:144:92:3288:-282.826,-15.5853,0	1/1:135:0,135:0:0:135:4818:-433.773,-40.6391,0	0/1:48:20,28:20:720:28:1004:-76.2264,0,-50.6458	0/1:47:14,33:14:485:33:1188:-93.0802,0,-29.8286	0/1:51:28,23:28:1000:23:824:-59.1308,0,-74.9595	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:45:21,24:21:756:24:860:-64.1755,0,-54.6991	1/1:125:0,125:0:0:125:4481:-403.412,-37.6288,0	1/1:96:0,96:0:0:96:3425:-308.463,-28.8989,0	1/1:114:0,114:0:0:114:4079:-367.296,-34.3174,0	0/1:73:49,24:49:1726:24:860:-55.7466,0,-133.639	1/1:170:3,167:3:108:167:5977:-527.955,-41.0999,0	0/1:25:19,6:19:680:6:216:-12.2648,0,-54.0034	1/1:98:0,98:0:0:98:3478:-313.19,-29.5009,0	0/1:86:56,30:56:1989:30:1080:-71.6247,0,-153.087	0/1:168:84,84:84:3000:84:3016:-221.097,0,-219.443	0/1:75:33,42:33:1188:42:1512:-113.797,0,-84.1804	0/1:71:38,33:38:1368:33:1184:-85.4952,0,-102.031	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:104:56,48:56:1980:48:1720:-123.778,0,-147.001	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0071	1/1:71:0,71:0:0:71:2552:-229.922,-21.3731,0	0/1:57:36,21:36:1292:21:752:-50.8475,0,-99.4059	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:147:69,78:69:2446:78:2777:-205.919,0,-175.954	0/1:52:38,14:38:1349:14:500:-29.6826,0,-105.968	1/1:65:0,64:0:0:64:2300:-206.896,-19.2659,0	1/1:79:0,79:0:0:79:2832:-255.099,-23.7814,0
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chr05	28043379	.	G	A	72243.6	PASS	AB=0.462927;ABP=33.4407;AC=138;AF=0.734043;AN=188;AO=3480;CIGAR=1X;DP=4862;DPB=4862;DPRA=52.2688;EPP=7559.73;EPPR=2999.64;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.7922;MQMR=59.6507;NS=94;NUMALT=1;ODDS=1.47336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124633;QR=49411;RO=1380;RPL=3480;RPP=7559.73;RPPR=2999.64;RPR=0;RUN=1;SAF=0;SAP=7559.73;SAR=3480;SRF=0;SRP=2999.64;SRR=1380;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1612:-143.211,-13.5464,0	0/1:54:25,29:25:896:29:1040:-77.6349,0,-64.7004	1/1:102:0,102:0:0:102:3668:-330.321,-30.7051,0	1/1:99:0,99:0:0:99:3532:-318.09,-29.802,0	0/1:54:30,24:30:1068:24:864:-61.8269,0,-80.1022	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4119	0/1:40:23,17:23:813:17:612:-43.3676,0,-60.9562	1/1:101:1,100:1:36:100:3588:-319.514,-26.8058,0	0/1:52:30,22:30:1080:22:784:-55.1003,0,-81.8535	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:23:0,23:0:0:23:819:-74.0316,-6.92369,0	0/1:38:22,16:22:788:16:567:-39.9216,0,-59.788	0/1:35:19,16:19:684:16:576:-41.6389,0,-51.3543	0/1:35:12,23:12:432:23:828:-64.3081,0,-28.6851	1/1:17:0,17:0:0:17:612:-55.4119,-5.11751,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:148:76,72:76:2716:72:2588:-188.616,0,-200.129	0/1:93:46,47:46:1640:47:1688:-124.211,0,-119.893	0/1:120:71,49:71:2524:49:1745:-121.202,0,-191.172	0/1:114:62,52:62:2220:52:1872:-134.437,0,-165.708	1/1:44:3,41:3:108:41:1468:-122.333,-3.17015,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:130:0,130:0:0:130:4656:-419.146,-39.1339,0	1/1:117:0,117:0:0:117:4177:-376.11,-35.2205,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:151:78,73:78:2800:73:2620:-190.589,0,-206.557	1/1:63:4,59:4:140:59:2107:-176.953,-6.02031,0	1/1:62:0,62:0:0:62:2227:-200.692,-18.6639,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:75:41,34:41:1468:34:1216:-87.167,0,-109.825	1/1:104:0,104:0:0:104:3728:-335.703,-31.3071,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:34:13,21:13:464:21:756:-58.1322,0,-31.8583	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:113:63,50:63:2249:50:1773:-125.835,0,-167.509	0/1:11:9,2:9:320:2:57:-2.10198,0,-25.831	1/1:21:0,21:0:0:21:752:-68.004,-6.32163,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:78:36,42:36:1296:42:1508:-112.428,0,-93.2734	1/1:96:1,95:1:36:95:3385:-301.03,-25.3006,0	0/1:68:40,28:40:1436:28:1008:-70.5663,0,-109.068	1/1:43:0,43:0:0:43:1531:-138.078,-12.9443,0	0/1:54:16,38:16:576:38:1364:-106.803,0,-35.9194	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:86:46,40:46:1656:40:1440:-104.009,0,-123.44	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	1/1:113:0,113:0:0:113:4064:-365.444,-34.0164,0	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	1/1:7:0,7:0:0:7:233:-21.2765,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:55:0,55:0:0:55:1976:-178.104,-16.5567,0	0/1:63:34,29:34:1224:29:1044:-75.3099,0,-91.5022	0/1:10:7,3:7:252:3:104:-6.69154,0,-20.0187	1/1:56:0,56:0:0:56:2006:-180.775,-16.8577,0	0/1:131:71,60:71:2548:60:2156:-154.861,0,-189.343	0/1:42:25,17:25:900:17:608:-41.7754,0,-68.6778	0/1:52:32,20:32:1144:20:716:-49.1142,0,-87.616	1/1:99:0,99:0:0:99:3552:-319.884,-29.802,0	1/1:132:2,130:2:72:130:4649:-411.605,-32.8992,0	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:43:22,21:22:784:21:748:-54.701,0,-57.9396	0/1:34:12,22:12:432:22:784:-60.6489,0,-28.9862	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:66:35,31:35:1256:31:1116:-80.8837,0,-93.4773	1/1:44:0,44:0:0:44:1576:-142.075,-13.2453,0	1/1:73:1,72:1:36:72:2579:-228.63,-18.3769,0	1/1:87:0,87:0:0:87:3128:-281.744,-26.1896,0	0/1:102:62,40:62:2224:40:1421:-97.4804,0,-169.449	1/1:51:0,51:0:0:51:1805:-162.73,-15.3525,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:66:0,66:0:0:66:2364:-213.016,-19.868,0	0/1:70:43,25:43:1529:25:896:-60.1491,0,-117.09	0/1:120:64,56:64:2296:56:1996:-143.79,0,-170.648	0/1:53:30,23:30:1068:23:828:-58.8895,0,-80.3096	0/1:44:35,9:35:1244:9:324:-16.1295,0,-99.0193	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:41:17,24:17:612:24:860:-64.831,0,-43.0666	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8767	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:30:15,15:15:540:15:540:-39.9056,0,-39.8493	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:48:25,23:25:896:23:820:-59.543,0,-66.4919	0/1:27:23,4:23:828:4:144:-5.18581,0,-66.7163	1/1:58:0,58:0:0:58:2072:-186.64,-17.4597,0	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0
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chr05	28074669	.	G	C	25128.3	PASS	AB=0.500159;ABP=3.01099;AC=49;AF=0.260638;AN=188;AO=1582;CIGAR=1X;DP=6139;DPB=6139;DPRA=1.0462;EPP=3438.28;EPPR=9878.87;GTI=1;LEN=1;MEANALT=1.12727;MQM=59.9735;MQMR=59.9936;NS=94;NUMALT=1;ODDS=1.41244;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54598;QR=161315;RO=4548;RPL=1570;RPP=3334.84;RPPR=9637.16;RPR=12;RUN=1;SAF=1570;SAP=3334.84;SAR=12;SRF=4520;SRP=9637.16;SRR=28;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:61:24,37:24:842:37:1285:-97.5855,0,-57.7342	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/0:138:138,0:138:4922:0:0:0,-41.5421,-443.131	0/1:6:4,2:4:129:2:72:-5.03054,0,-10.1215	0/1:16:4,12:4:129:12:428:-34.0137,0,-7.11118	0/1:92:50,41:50:1784:41:1441:-102.22,0,-133.089	0/0:106:106,0:106:3774:0:0:0,-31.9092,-339.86	0/1:46:22,24:22:780:24:827:-60.8971,0,-56.6757	0/0:69:69,0:69:2445:0:0:0,-20.7711,-220.304	0/0:98:98,0:98:3487:0:0:0,-29.5009,-314.041	0/0:52:52,0:52:1834:0:0:0,-15.6536,-165.339	0/1:51:29,22:29:1032:22:762:-53.545,0,-77.8409	0/1:106:56,50:56:1967:50:1643:-116.237,0,-145.393	0/1:37:17,20:17:608:20:693:-51.5515,0,-43.9139	0/0:49:49,0:49:1736:0:0:0,-14.7505,-156.525	0/1:103:56,47:56:1977:47:1605:-113.727,0,-147.197	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.966	0/1:41:27,14:27:968:14:486:-31.7257,0,-75.0951	0/1:158:62,96:62:2196:96:3358:-254.875,0,-150.341	0/1:54:18,36:18:633:36:1234:-95.1015,0,-41.0394	0/1:54:15,39:15:536:39:1342:-104.818,0,-32.3192	0/1:38:12,25:12:432:25:876:-67.6595,0,-27.7233	0/1:38:33,5:33:1161:5:180:-5.11293,0,-93.3556	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:169:169,0:169:6036:0:0:0,-50.8741,-543.343	0/0:154:154,0:154:5504:0:0:0,-46.3586,-495.485	0/1:28:15,13:15:531:13:438:-31.3133,0,-39.6931	0/1:161:67,94:67:2380:94:3269:-245.967,0,-165.993	0/0:90:86,4:86:3038:4:140:0,-14.1481,-260.704	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:137:80,57:80:2820:57:1971:-136.419,0,-212.798	0/0:78:77,1:77:2752:1:36:0,-19.8821,-244.324	0/0:72:72,0:72:2542:0:0:0,-21.6742,-229.031	0/1:7:5,2:5:171:2:72:-4.72951,0,-13.6182	0/1:131:59,72:59:2077:72:2568:-191.935,0,-147.764	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:61:28,33:28:969:33:1134:-83.9972,0,-69.154	0/1:72:35,37:35:1244:37:1264:-92.3828,0,-90.5905	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/1:67:36,31:36:1262:31:1057:-75.2627,0,-93.712	0/0:129:126,3:126:4455:3:104:0,-29.1301,-391.42	0/1:60:36,24:36:1259:24:833:-57.2229,0,-95.547	0/0:125:125,0:125:4430:0:0:0,-37.6287,-398.87	0/1:71:43,28:43:1523:28:985:-67.5884,0,-115.989	0/1:10:3,6:3:108:6:201:-15.3515,0,-7.00607	0/1:62:36,26:36:1292:26:920:-64.4532,0,-97.919	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/1:6:1,5:1:36:5:171:-13.9193,0,-1.79209	0/0:53:53,0:53:1859:0:0:0,-15.9546,-167.586	0/1:30:21,9:21:752:9:320:-20.1115,0,-58.9754	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6803	0/0:30:30,0:30:1036:0:0:0,-9.0309,-93.5461	0/1:108:46,61:46:1636:61:2095:-156.247,0,-114.959	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:212:211,0:211:7511:0:0:0,-63.5173,-675.67	0/1:97:53,44:53:1874:44:1518:-107.69,0,-139.738	0/1:62:42,20:42:1489:20:712:-45.7428,0,-115.634	0/1:32:17,15:17:603:15:536:-38.9419,0,-44.9665	0/0:94:91,2:91:3238:2:72:0,-21.5189,-284.805	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:45:31,14:31:1112:14:459:-28.0767,0,-86.845	0/1:33:16,17:16:572:17:601:-44.4852,0,-41.8794	0/1:98:55,43:55:1950:43:1440:-100.384,0,-146.274	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:36:20,15:20:716:15:508:-35.1454,0,-53.8719	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:90:89,0:89:3184:0:0:0,-26.7917,-286.424	0/0:120:120,0:120:4284:0:0:0,-36.1236,-385.736	0/1:66:38,28:38:1355:28:957:-66.5682,0,-102.38	0/0:83:83,0:83:2927:0:0:0,-24.9855,-263.664	0/1:15:8,7:8:288:7:237:-17.1436,0,-21.752	0/0:79:79,0:79:2797:0:0:0,-23.7814,-251.97	0/1:110:49,61:49:1747:61:2129:-158.762,0,-124.4	0/1:82:38,43:38:1355:43:1528:-113.07,0,-97.5065	0/1:71:40,31:40:1416:31:1027:-71.3545,0,-106.364	0/1:58:28,30:28:985:30:1030:-75.5445,0,-71.5018	0/0:76:76,0:76:2691:0:0:0,-22.8783,-242.433	0/1:97:52,45:52:1801:45:1548:-110.408,0,-133.167	0/1:33:16,17:16:564:17:574:-42.0442,0,-41.1563	0/0:72:72,0:72:2553:0:0:0,-21.6742,-230.02	0/1:70:26,44:26:915:44:1536:-117.457,0,-61.5935	0/0:99:99,0:99:3493:0:0:0,-29.802,-314.583	0/1:137:59,78:59:2084:78:2594:-192.465,0,-146.587	0/1:72:29,43:29:1027:43:1466:-110.555,0,-71.068	0/0:47:46,1:46:1631:1:36:0,-10.5501,-143.48	0/0:84:82,2:82:2859:2:68:0,-18.8288,-251.089
chr05	28105335	.	G	A	29359.8	PASS	AB=0.513377;ABP=8.23888;AC=48;AF=0.26087;AN=184;AO=1740;CIGAR=1X;DP=6653;DPB=6653;DPRA=1.16023;EPP=3781.37;EPPR=10654.1;GTI=0;LEN=1;MEANALT=1.03571;MQM=59.9983;MQMR=60;NS=92;NUMALT=1;ODDS=1.0283;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62299;QR=175058;RO=4909;RPL=1740;RPP=3781.37;RPPR=10654.1;RPR=0;RUN=1;SAF=1740;SAP=3781.37;SAR=0;SRF=4909;SRP=10662.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:53:20,33:20:720:33:1188:-91.274,0,-49.1742	0/0:159:159,0:159:5686:0:0:0,-47.8638,-511.858	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.123	0/1:53:14,39:14:481:39:1400:-110.345,0,-27.6605	0/1:37:12,25:12:428:25:896:-69.8222,0,-27.7207	0/1:95:45,50:45:1620:50:1792:-132.965,0,-117.492	0/0:75:74,0:74:2640:0:0:0,-22.2762,-237.488	0/1:102:53,49:53:1896:49:1760:-127.979,0,-140.213	0/0:95:93,1:93:3339:1:36:0,-25.0584,-297.128	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:79:79,0:79:2799:0:0:0,-23.7814,-252.151	0/1:75:41,34:41:1468:34:1216:-87.1693,0,-109.839	0/1:31:14,17:14:504:17:612:-46.0815,0,-36.3662	0/1:62:34,28:34:1212:28:1000:-71.6515,0,-90.7225	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/1:25:14,11:14:500:11:396:-28.457,0,-37.8104	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/1:127:66,61:66:2356:61:2181:-158.325,0,-174.068	0/1:165:91,74:91:3256:74:2660:-189.975,0,-243.591	0/1:123:36,87:36:1292:87:3109:-243.009,0,-79.5571	0/1:89:53,36:53:1887:36:1292:-89.7921,0,-143.316	0/0:62:61,1:61:2180:1:36:0,-15.0656,-192.868	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:160:159,1:159:5680:1:36:0,-44.5665,-507.719	0/0:161:159,2:159:5656:2:72:0,-41.6291,-502.325	0/1:21:17,4:17:593:4:144:-6.99199,0,-47.3731	0/1:146:89,56:89:3175:56:2006:-136.802,0,-241.965	0/0:94:91,3:91:3241:3:108:0,-18.2216,-281.836	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.064	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:161:83,78:83:2967:78:2800:-203.774,0,-218.797	0/0:162:162,0:162:5773:0:0:0,-48.7669,-519.686	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	.:.:.:.:.:.:.:.	0/1:107:49,58:49:1752:58:2080:-155.26,0,-125.754	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:107:54,53:54:1917:53:1904:-139.428,0,-140.595	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:130:130,0:130:4631:0:0:0,-39.1339,-416.952	0/1:84:38,46:38:1351:46:1648:-123.322,0,-96.6031	0/0:119:116,3:116:4128:3:108:0,-25.7474,-361.629	0/1:36:19,17:19:684:17:606:-44.034,0,-51.0532	0/0:78:78,0:78:2787:0:0:0,-23.4803,-251.07	0/1:114:54,60:54:1931:60:2148:-159.27,0,-139.748	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:83:40,43:40:1405:43:1529:-112.916,0,-101.76	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:115:115,0:115:4109:0:0:0,-34.6184,-369.994	0/1:34:17,17:17:603:17:608:-44.817,0,-44.3645	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:77:37,40:37:1305:40:1432:-105.998,0,-94.5701	0/1:10:4,6:4:144:6:207:-15.9566,0,-10.3033	0/0:118:117,0:117:4168:0:0:0,-35.2205,-374.942	0/1:122:49,73:49:1739:73:2624:-199.681,0,-120.068	0/1:35:15,20:15:540:20:720:-54.5927,0,-38.4005	0/1:54:30,24:30:1061:24:864:-61.8269,0,-79.5437	0/0:178:178,0:178:6365:0:0:0,-53.5833,-572.939	0/0:148:147,1:147:5257:1:36:0,-40.9542,-469.667	0/1:17:10,7:10:352:7:252:-17.9114,0,-26.9007	0/1:52:20,32:20:720:32:1132:-86.535,0,-49.4752	0/1:37:20,17:20:716:17:608:-43.9139,0,-53.6296	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:211:90,121:90:3189:121:4328:-326.179,0,-223.714	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.425	0/0:91:91,0:91:3251:0:0:0,-27.3937,-292.811	0/0:118:118,0:118:4206:0:0:0,-35.5215,-378.721	0/1:96:36,60:36:1278:60:2148:-164.689,0,-86.4228	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	.:.:.:.:.:.:.:.	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:90:51,39:51:1814:39:1390:-98.306,0,-136.447	0/1:142:80,62:80:2850:62:2213:-156.688,0,-213.991	0/1:55:32,23:32:1129:23:810:-56.663,0,-85.3597	0/1:60:29,31:29:1027:31:1112:-82.3295,0,-74.6804	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.859	0/1:118:64,54:64:2275:54:1931:-138.544,0,-169.49	0/1:20:9,11:9:311:11:381:-28.6,0,-22.3031	0/0:58:58,0:58:2037:0:0:0,-17.4597,-183.601	0/1:50:22,28:22:773:28:1008:-75.9849,0,-54.838	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:61:36,25:36:1296:25:900:-62.9582,0,-98.5811	0/1:60:12,48:12:432:48:1716:-136.664,0,-21.1594	0/0:93:93,0:93:3313:0:0:0,-27.9958,-298.388	0/0:78:77,1:77:2739:1:36:0,-19.8821,-243.155
chr05	28126372	.	GT	CG,GG	110272	PASS	AB=0.47167,0.525018;ABP=21.9576,17.7872;AC=138,50;AF=0.734043,0.265957;AN=188;AO=3765,1437;CIGAR=2X,1M1X;DP=5219;DPB=5219;DPRA=14.0188,1.174;EPP=8005.81,3028.6;EPPR=0;GTI=1;LEN=2,1;MEANALT=1.73118,2.15094;MQM=59.8975,59.9346;MQMR=0;NS=94;NUMALT=2;ODDS=1.90743;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=132017,50764;QR=0;RO=0;RPL=0,0;RPP=8178.6,3123.42;RPPR=0;RPR=3765,1437;RUN=1,1;SAF=20,11;SAP=8005.81,3028.6;SAR=3745,1426;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41,0:0:0:41,0:1428,0:-128.814,-12.3422,0,-128.814,-12.3422,-128.814	1/2:44:0,20,24:0:0:20,24:692,860:-126.696,-70.4687,-64.4481,-56.5788,0,-49.3541	1/1:64:0,64,0:0:0:64,0:2266,0:-204.202,-19.2659,0,-204.202,-19.2659,-204.202	1/1:103:0,102,1:0:0:102,1:3542,36:-318.582,-30.7051,0,-315.644,-27.4078,-315.343	1/2:45:0,23,22:0:0:23,22:807,764:-128.131,-62.4546,-55.5309,-66.0256,0,-59.4029	1/2:17:0,10,7:0:0:10,7:356,252:-49.9347,-20.9217,-17.9114,-29.3712,0,-27.2639	1/2:32:0,15,17:0:0:15,17:536,608:-93.6364,-49.9345,-45.4191,-44.0592,0,-38.9417	1/1:85:0,85,0:0:0:85,0:2978,0:-268.19,-25.5876,0,-268.19,-25.5876,-268.19	1/2:34:0,10,24:0:0:10,24:353,851:-98.4301,-69.6847,-66.6744,-29.0987,0,-21.8739	1/1:62:0,62,0:0:0:62,0:2175,0:-196.014,-18.6639,0,-196.014,-18.6639,-196.014	1/1:29:0,29,0:0:0:29,0:1025,0:-92.5619,-8.72987,0,-92.5619,-8.72987,-92.5619	1/1:33:0,33,0:0:0:33,0:1151,0:-103.894,-9.93399,0,-103.894,-9.93399,-103.894	1/2:40:0,24,16:0:0:24,16:857,564:-116.145,-46.2725,-39.0478,-70.2266,0,-65.4101	1/2:47:0,27,19:0:0:27,19:955,672:-132.511,-54.7277,-46.5999,-77.7774,0,-72.0578	1/2:51:0,20,31:0:0:20,31:696,1091:-145.757,-89.1668,-83.1462,-56.9398,0,-47.6079	1/1:35:0,34,0:0:0:34,0:1204,0:-108.304,-10.235,0,-108.304,-10.235,-108.304	1/2:45:0,25,20:0:0:25,20:875,707:-129.122,-57.934,-50.4082,-71.5396,0,-65.519	1/1:30:0,30,0:0:0:30,0:1058,0:-95.5315,-9.0309,0,-95.5315,-9.0309,-95.5315	1/2:24:0,14,10:0:0:14,10:493,351:-69.0528,-28.9164,-24.702,-40.4878,0,-37.4775	1/2:111:0,40,70:0:0:40,70:1409,2479:-316.642,-201.932,-189.891,-114.703,0,-93.6307	1/2:73:0,42,31:0:0:42,31:1457,1095:-207.953,-89.5272,-76.8839,-118.776,0,-109.444	1/2:74:0,15,58:0:0:15,58:524,2057:-210.312,-167.689,-163.174,-42.7167,0,-25.257	1/2:35:0,15,20:0:0:15,20:524,714:-101.188,-58.5663,-54.0509,-42.974,0,-36.9534	1/1:72:0,71,1:0:0:71,1:2481,36:-223.177,-21.3731,0,-220.239,-18.0759,-219.938	1/1:59:0,59,0:0:0:59,0:2033,0:-183.234,-17.7608,0,-183.234,-17.7608,-183.234	1/1:194:0,191,3:0:0:191,3:6616,104:-595.168,-57.4967,0,-586.715,-48.697,-585.811	1/1:77:0,76,0:0:0:76,0:2687,0:-241.714,-22.8783,0,-241.714,-22.8783,-241.714	1/2:19:0,8,11:0:0:8,11:281,392:-55.1772,-32.3087,-29.9005,-23.2217,0,-19.9103	1/2:102:0,55,47:0:0:55,47:1957,1657:-294.756,-135.267,-118.711,-159.843,0,-145.694	1/1:55:0,53,1:0:0:53,1:1885,36:-169.568,-15.9546,0,-166.631,-13.0172,-166.33	1/1:39:0,39,0:0:0:39,0:1381,0:-124.588,-11.7402,0,-124.588,-11.7402,-124.588	1/2:6:0,2,4:0:0:2,4:72,140:-17.6186,-11.7405,-11.1384,-6.23466,0,-5.03054	1/1:12:0,11,0:0:0:11,0:394,0:-35.4418,-3.31133,0,-35.4418,-3.31133,-35.4418	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:6:0,6,0:0:0:6,0:190,0:-17.4111,-1.80618,0,-17.4111,-1.80618,-17.4111	1/2:96:0,39,55:0:0:39,55:1373,1936:-269.426,-157.65,-145.91,-111.82,0,-95.2637	1/1:115:0,115,0:0:0:115,0:4079,0:-367.296,-34.6185,0,-367.296,-34.6185,-367.296	1/1:31:0,31,0:0:0:31,0:1067,0:-96.3338,-9.33193,0,-96.3338,-9.33193,-96.3338	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/2:79:0,36,43:0:0:36,43:1251,1527:-226.48,-124.778,-113.941,-102.052,0,-89.1081	1/1:22:0,22,0:0:0:22,0:783,0:-70.7934,-6.62266,0,-70.7934,-6.62266,-70.7934	1/2:99:0,39,60:0:0:39,60:1363,2100:-282.082,-171.206,-159.466,-111.225,0,-93.1635	1/2:35:0,17,18:0:0:17,18:606,635:-101.458,-52.0584,-46.9409,-49.7541,0,-44.3356	1/1:35:0,35,0:0:0:35,0:1220,0:-110.099,-10.5361,0,-110.099,-10.5361,-110.099	1/1:59:0,59,0:0:0:59,0:2055,0:-185.216,-17.7608,0,-185.216,-17.7608,-185.216	1/2:108:0,51,56:0:0:51,56:1799,1970:-306.839,-160.353,-145,-146.478,0,-129.621	1/1:155:0,154,0:0:0:154,0:5411,0:-486.824,-46.3586,0,-486.824,-46.3586,-486.824	1/2:66:0,34,32:0:0:34,32:1174,1144:-189.011,-93.6366,-83.4015,-95.7257,0,-86.0927	1/1:80:0,79,0:0:0:79,0:2774,0:-249.582,-23.7814,0,-249.582,-23.7814,-249.582	1/2:128:0,66,62:0:0:66,62:2309,2199:-367.357,-179.511,-159.643,-188.198,0,-169.534	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/2:73:0,29,44:0:0:29,44:1016,1545:-208.762,-126.093,-117.363,-83.02,0,-69.7747	1/1:7:0,7,0:0:0:7,0:252,0:-23.0243,-2.10721,0,-23.0243,-2.10721,-23.0243	1/2:12:0,4,8:0:0:4,8:142,275:-34.2492,-22.6752,-21.4711,-11.9251,0,-9.51685	1/1:111:0,110,0:0:0:110,0:3827,0:-344.417,-33.1133,0,-344.417,-33.1133,-344.417	1/2:19:0,10,8:0:0:10,8:343,266:-49.3487,-21.4986,-18.4883,-27.8307,0,-25.4225	1/1:8:0,8,0:0:0:8,0:283,0:-25.8122,-2.40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chr05	28141944	.	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chr05	28213653	.	C	A	23844.8	PASS	AB=0.562897;ABP=84.1384;AC=53;AF=0.281915;AN=188;AO=1377;CIGAR=1X;DP=4703;DPB=4703;DPRA=1.15869;EPP=2993.13;EPPR=7214.47;GTI=2;LEN=1;MEANALT=1.05357;MQM=59.9971;MQMR=59.9937;NS=94;NUMALT=1;ODDS=0.28681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49178;QR=118627;RO=3321;RPL=0;RPP=2993.13;RPPR=7214.47;RPR=1377;RUN=1;SAF=0;SAP=2993.13;SAR=1377;SRF=0;SRP=7214.47;SRR=3321;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:76:22,54:22:792:54:1932:-151.278,0,-48.7274	0/0:91:90,1:90:3217:1:36:0,-23.7955,-286.153	0/0:107:106,1:106:3796:1:36:0,-28.6119,-338.24	0/1:50:13,37:13:460:37:1309:-103.058,0,-26.6839	0/1:40:30,10:30:1072:10:360:-20.7031,0,-84.6805	0/1:51:21,30:21:756:30:1065:-80.8072,0,-53.0147	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/1:54:35,19:35:1247:19:680:-45.2735,0,-96.2785	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:19:7,12:7:248:12:428:-33.1392,0,-16.9446	0/1:18:4,14:4:144:14:487:-38.7407,0,-7.89508	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:83:28,55:28:1004:55:1964:-152.05,0,-65.6904	0/1:89:47,42:47:1677:42:1508:-109.223,0,-124.424	0/1:93:32,61:32:1152:61:2188:-169.19,0,-75.9944	0/1:93:63,29:63:2245:29:1040:-65.8598,0,-174.257	0/0:27:26,1:26:936:1:36:0,-4.52953,-80.9612	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:188:185,2:185:6601:2:72:0,-49.8157,-587.332	0/0:154:154,0:154:5455:0:0:0,-46.3586,-491.077	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:164:76,88:76:2736:88:3160:-235.255,0,-197.113	0/0:126:125,0:125:4450:0:0:0,-37.6287,-400.31	0/0:84:84,0:84:2994:0:0:0,-25.2865,-269.691	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:19:18,1:18:648:1:36:0,-2.12129,-55.0536	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:33:10,23:10:360:23:815:-63.7368,0,-22.8103	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:101:54,47:54:1932:47:1683:-121.352,0,-143.753	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:95:48,47:48:1728:47:1673:-122.257,0,-127.207	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:74:74,0:74:2629:0:0:0,-22.2762,-236.856	0/1:94:30,64:30:1076:64:2300:-178.964,0,-68.856	0/0:119:119,0:119:4247:0:0:0,-35.8226,-382.407	0/1:66:32,34:32:1139:34:1199:-88.3468,0,-82.9504	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:68:22,46:22:777:46:1637:-127.148,0,-49.7803	0/1:7:1,6:1:36:6:201:-16.3098,0,-1.49106	0/1:111:38,73:38:1349:73:2585:-199.482,0,-88.2939	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:32:27,5:27:942:5:180:-6.91911,0,-75.4569	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/1:33:9,24:9:320:24:860:-67.7878,0,-19.2084	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:94:93,0:93:3314:0:0:0,-27.9958,-298.116	0/1:93:30,63:30:1076:63:2259:-175.576,0,-69.1571	0/1:31:9,22:9:320:22:792:-62.2737,0,-19.8104	0/1:65:29,36:29:1044:36:1259:-94.0426,0,-74.7079	0/0:124:124,0:124:4383:0:0:0,-37.3277,-394.646	0/0:122:120,2:120:4297:2:72:0,-29.8889,-380.068	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:22:8,14:8:288:14:500:-38.7135,0,-19.6447	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:106:59,47:59:2097:47:1683:-119.847,0,-157.089	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:135:135,0:135:4828:0:0:0,-40.639,-434.675	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:165:70,95:70:2516:95:3389:-255.555,0,-177.022	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7228	0/1:16:12,4:12:432:4:140:-8.1281,0,-34.4047	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:99:41,58:41:1468:58:2088:-158.388,0,-102.614	0/1:111:55,56:55:1976:56:2008:-147.579,0,-144.7	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:27:9,18:9:307:18:648:-50.5241,0,-19.8324	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	1/1:16:0,16:0:0:16:559:-50.6376,-4.81648,0	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/1:30:8,21:8:288:21:747:-58.5864,0,-17.291	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:58:58,0:58:2046:0:0:0,-17.4597,-184.408	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201
chr05	28285583	.	GTT	GTC,ATC	185940	PASS	AB=0.575493,0.421819;ABP=223.989,240.006;AC=140,48;AF=0.744681,0.255319;AN=188;AO=8311,1899;CIGAR=2M1X,1X1M1X;DP=10242;DPB=10241.7;DPRA=0,0.993692;EPP=17937.4,4109.28;EPPR=0;GTI=10;LEN=1,3;MEANALT=1.91489,2.25;MQM=37.2552,25.8931;MQMR=0;NS=94;NUMALT=2;ODDS=2743.17;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=297584,67567;QR=0;RO=0;RPL=13,2;RPP=17937.4,4109.28;RPPR=0;RPR=8298,1897;RUN=1,1;SAF=8311,1899;SAP=18050.1,4126.64;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31,0:0:0:31,0:1112,0:-87.9136,-9.33193,0,-87.9136,-9.33193,-87.9136	1/2:174:0,104,70:0:0:104,70:3716,2510:-389.772,-122.324,-91.0169,-267.712,0,-246.64	1/1:168:0,167,1:0:0:167,1:5969,34:-477.425,-50.272,0,-475.686,-48.3061,-475.385	1/1:183:0,183,0:0:0:183,0:6568,0:-555.112,-55.0885,0,-555.112,-55.0885,-555.112	1/2:33:0,22,11:0:0:22,11:788,394:-79.577,-21.3411,-14.7185,-58.5093,0,-55.198	1/2:20:0,13,7:0:0:13,7:468,250:-46.5963,-12.4666,-8.55326,-34.3913,0,-32.2841	1/1:194:0,191,0:0:0:191,0:6868,0:-576.603,-57.4967,0,-576.603,-57.4967,-576.603	1/1:188:0,188,0:0:0:188,0:6744,0:-538.275,-56.5936,0,-538.275,-56.5936,-538.275	1/2:69:0,35,34:0:0:35,34:1241,1212:-148.448,-59.1407,-48.6047,-89.5779,0,-79.3429	1/1:178:0,177,0:0:0:177,0:6360,0:-539.204,-53.2823,0,-539.204,-53.2823,-539.204	1/1:80:0,79,0:0:0:79,0:2821,0:-236.777,-23.7814,0,-236.777,-23.7814,-236.777	1/1:78:0,77,0:0:0:77,0:2750,0:-220.726,-23.1793,0,-220.726,-23.1793,-220.726	1/2:58:0,32,26:0:0:32,26:1144,920:-127.833,-45.3762,-35.7432,-82.725,0,-74.8982	1/2:66:0,38,28:0:0:38,28:1350,995:-153.467,-53.4708,-42.0317,-100.275,0,-91.8465	1/2:92:0,51,41:0:0:51,41:1818,1459:-221.358,-84.2643,-68.9118,-137.386,0,-125.044	1/1:67:0,67,0:0:0:67,0:2404,0:-199.917,-20.169,0,-199.917,-20.169,-199.917	1/2:69:0,43,25:0:0:43,25:1548,900:-152.92,-43.6675,-30.7232,-109.203,0,-101.677	1/1:82:0,82,0:0:0:82,0:2927,0:-233.496,-24.6845,0,-233.496,-24.6845,-233.496	1/2:19:0,11,8:0:0:11,8:396,286:-42.2227,-14.2166,-10.9053,-28.2709,0,-25.8627	1/2:186:0,116,70:0:0:116,70:4130,2486:-456.785,-143.891,-108.971,-313.183,0,-292.111	1/2:110:0,52,57:0:0:52,57:1864,2008:-250.491,-111.218,-95.5641,-139.367,0,-122.209	1/2:91:0,46,45:0:0:46,45:1648,1602:-227.518,-100.252,-86.405,-127.576,0,-114.029	1/2:76:0,38,38:0:0:38,38:1360,1352:-182.16,-78.8546,-67.4155,-103.605,0,-92.1659	1/1:146:0,144,2:0:0:144,2:5153,72:-430.36,-43.3483,0,-426.523,-39.2633,-425.921	1/1:75:0,73,0:0:0:73,0:2620,0:-218.012,-21.9752,0,-218.012,-21.9752,-218.012	1/1:413:0,411,1:0:0:411,1:14708,36:-1271.45,-123.723,0,-1269.21,-121.485,-1268.91	1/1:255:0,252,0:0:0:252,0:9019,0:-747.956,-75.8596,0,-747.956,-75.8596,-747.956	1/2:27:0,16,11:0:0:16,11:576,391:-63.9391,-21.3133,-16.4968,-42.9058,0,-39.5945	1/2:250:0,154,95:0:0:154,95:5504,3383:-635.166,-207.639,-161.28,-427.546,0,-398.948	1/1:262:0,258,4:0:0:258,4:9243,144:-763.343,-77.6657,0,-755.667,-69.7423,-754.463	1/1:157:0,157,0:0:0:157,0:5599,0:-470.949,-47.2617,0,-470.949,-47.2617,-470.949	1/2:6:0,2,4:0:0:2,4:68,144:-13.1304,-7.92343,-7.32137,-5.50348,0,-4.29936	1/1:16:0,16,0:0:0:16,0:576,0:-48.5191,-4.81648,0,-48.5191,-4.81648,-48.5191	1/1:5:0,5,0:0:0:5,0:176,0:-14.7276,-1.50515,0,-14.7276,-1.50515,-14.7276	1/1:6:0,6,0:0:0:6,0:216,0:-17.6106,-1.80618,0,-17.6106,-1.80618,-17.6106	1/1:4:0,4,0:0:0:4,0:144,0:-12.0108,-1.20412,0,-12.0108,-1.20412,-12.0108	1/2:210:0,108,101:0:0:108,101:3880,3595:-522.712,-222.602,-190.09,-300.137,0,-269.733	1/1:248:0,246,0:0:0:246,0:8788,0:-729.27,-74.0534,0,-729.27,-74.0534,-729.27	1/1:62:0,62,0:0:0:62,0:2212,0:-177.83,-18.6639,0,-177.83,-18.6639,-177.83	1/1:1:0,1,0:0:0:1,0:36,0:-3.34615,-0.30103,0,-3.34615,-0.30103,-3.34615	1/2:138:0,98,39:0:0:98,39:3507,1389:-334.167,-74.4893,-44.9884,-259.713,0,-247.973	1/1:37:0,37,0:0:0:37,0:1324,0:-109.525,-11.1381,0,-109.525,-11.1381,-109.525	1/2:113:0,84,28:0:0:84,28:2996,1004:-277.026,-53.6475,-28.3609,-223.342,0,-214.913	1/2:93:0,48,45:0:0:48,45:1715,1613:-222.889,-93.0846,-78.6352,-130.102,0,-116.555	1/1:83:0,83,0:0:0:83,0:2984,0:-252.81,-24.9855,0,-252.81,-24.9855,-252.81	1/1:84:0,83,0:0:0:83,0:2980,0:-255.066,-24.9855,0,-255.066,-24.9855,-255.066	1/2:122:0,71,50:0:0:71,50:2548,1758:-269.626,-86.5921,-65.219,-183.07,0,-168.018	1/1:227:0,227,0:0:0:227,0:8134,0:-685.114,-68.3338,0,-685.114,-68.3338,-685.114	1/2:160:0,93,67:0:0:93,67:3329,2403:-393.079,-138.853,-110.857,-254.52,0,-234.351	1/1:193:0,191,0:0:0:191,0:6822,0:-578.432,-57.4967,0,-578.432,-57.4967,-578.432	1/2:106:0,68,37:0:0:68,37:2428,1328:-271.066,-81.8568,-61.3868,-189.304,0,-178.166	1/2:8:0,5,3:0:0:5,3:180,99:-20.1644,-6.28041,-4.77526,-14.1722,0,-13.2691	1/2:116:0,80,36:0:0:80,36:2864,1279:-265.221,-62.4642,-38.3818,-203.01,0,-192.173	1/1:41:0,41,0:0:0:41,0:1460,0:-125.621,-12.3422,0,-125.621,-12.3422,-125.621	1/2:14:0,8,6:0:0:8,6:288,214:-31.5617,-10.5404,-8.13217,-21.2887,0,-19.4825	1/1:165:0,165,0:0:0:165,0:5916,0:-489.05,-49.67,0,-489.05,-49.67,-489.05	1/2:30:0,26,4:0:0:26,4:936,144:-80.7385,-8.5957,-0.768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chr05	28336410	.	TGA	AGA	141126	PASS	AB=0.452282;ABP=103.105;AC=138;AF=0.734043;AN=188;AO=7196;CIGAR=1X2M;DP=9991;DPB=9991;DPRA=0;EPP=15628.9;EPPR=6018;GTI=0;LEN=1;MEANALT=1.12766;MQM=43.8948;MQMR=59.2207;NS=94;NUMALT=1;ODDS=2.35991;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251509;QR=97405;RO=2778;RPL=7196;RPP=15628.9;RPPR=6018;RPR=0;RUN=1;SAF=7196;SAP=15628.9;SAR=0;SRF=2778;SRP=6035.36;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:78:0,78:0:0:78:2686:-237.749,-23.4803,0	0/1:106:39,67:39:1363:67:2378:-178.257,0,-90.4476	1/1:227:0,226:0:0:226:7869:-692.568,-68.0328,0	1/1:198:2,196:2:70:196:6859:-600.168,-52.9566,0	0/1:96:56,40:56:1996:40:1384:-93.1931,0,-150.894	0/1:33:15,14:15:521:14:479:-33.2288,0,-38.1763	1/1:50:0,50:0:0:50:1741:-153.944,-15.0515,0	1/1:156:0,156:0:0:156:5450:-480.887,-46.9607,0	0/1:109:63,46:63:2210:46:1632:-111.776,0,-166.293	1/1:81:0,81:0:0:81:2815:-249.655,-24.3834,0	1/1:28:0,28:0:0:28:992:-88.3997,-8.42884,0	1/1:47:0,47:0:0:47:1648:-145.92,-14.1484,0	0/1:80:40,40:40:1403:40:1409:-100.103,0,-102.457	0/1:66:38,28:38:1292:28:989:-66.5599,0,-96.6054	0/1:51:25,26:25:877:26:896:-64.2133,0,-63.8948	1/1:49:0,49:0:0:49:1744:-153.562,-14.7505,0	0/1:20:11,9:11:391:9:311:-21.5788,0,-29.4938	1/1:12:0,12:0:0:12:428:-38.0079,-3.61236,0	0/1:10:8,2:8:268:2:72:-3.70833,0,-21.4337	0/1:226:123,100:123:4356:100:3480:-240.651,0,-324.662	0/1:166:93,73:93:3241:73:2540:-173.325,0,-241.003	0/1:194:136,58:136:4815:58:2006:-120.023,0,-375.092	0/1:216:100,116:100:3510:116:4080:-296.698,0,-250.912	0/1:105:16,88:16:547:88:3101:-242.07,0,-17.8825	1/1:90:0,90:0:0:90:3161:-277.792,-27.0927,0	1/1:370:4,366:4:142:366:12894:-1134.33,-98.2519,0	1/1:274:0,274:0:0:274:9548:-840.304,-82.4822,0	0/1:24:12,12:12:423:12:406:-28.4071,0,-31.1808	0/1:363:196,167:196:6913:167:5873:-413.284,0,-512.781	1/1:171:6,165:6:210:165:5809:-492.366,-32.2339,0	1/1:187:0,187:0:0:187:6489:-574.009,-56.2926,0	0/1:14:4,10:4:122:10:356:-27.5182,0,-7.06711	1/1:32:1,31:1:36:31:1075:-91.2417,-6.03469,0	1/1:16:0,16:0:0:16:557:-49.606,-4.81648,0	1/1:48:0,48:0:0:48:1679:-148.324,-14.4494,0	1/1:33:0,33:0:0:33:1169:-103.581,-9.93399,0	0/1:135:78,57:78:2753:57:1972:-134.731,0,-207.326	1/1:179:0,179:0:0:179:6294:-553.461,-53.8844,0	1/1:19:0,19:0:0:19:680:-60.4627,-5.71957,0	0/1:5:2,3:2:72:3:89:-6.6943,0,-5.33062	0/1:121:62,58:62:2145:58:1997:-140.041,0,-156.893	1/1:18:0,18:0:0:18:621:-55.141,-5.41854,0	0/1:165:96,69:96:3327:69:2388:-161.271,0,-249.801	0/1:31:17,14:17:597:14:488:-34.3427,0,-44.7259	1/1:36:0,36:0:0:36:1237:-109.841,-10.8371,0	1/1:162:0,161:0:0:161:5599:-497.948,-48.4658,0	0/1:186:90,96:90:3156:96:3378:-242.415,0,-228.229	1/1:227:0,227:0:0:227:7946:-704.593,-68.3338,0	0/1:99:68,31:68:2409:31:1089:-66.7852,0,-187.122	1/1:162:0,161:0:0:161:5654:-501.003,-48.4658,0	0/1:176:98,78:98:3397:78:2699:-186.543,0,-252.694	0/1:16:10,6:10:358:6:212:-14.3362,0,-27.7464	0/1:162:81,81:81:2859:81:2790:-197.931,0,-208.768	1/1:84:0,84:0:0:84:2981:-265.721,-25.2865,0	1/1:3:0,3:0:0:3:108:-9.92214,-0.90309,0	1/1:211:0,211:0:0:211:7357:-645.975,-63.5173,0	0/1:53:36,17:36:1286:17:570:-34.8998,0,-99.9596	0/1:21:16,5:16:564:5:178:-9.65537,0,-44.7683	1/1:23:0,23:0:0:23:793:-71.1425,-6.92369,0	1/1:121:0,121:0:0:121:4201:-370.064,-36.4246,0	0/1:95:53,42:53:1851:42:1498:-104.073,0,-138.217	0/1:15:5,10:5:176:10:356:-27.4037,0,-11.6698	1/1:211:0,211:0:0:211:7381:-656.515,-63.5173,0	0/1:210:120,89:120:4166:89:3127:-213.857,0,-311.498	0/1:71:32,39:32:1127:39:1375:-99.8702,0,-80.3079	0/1:77:34,43:34:1190:43:1508:-110.936,0,-83.8689	1/1:229:5,223:5:165:223:7823:-678.155,-53.6687,0	1/1:284:0,284:0:0:284:9980:-882.961,-85.4925,0	0/1:24:14,10:14:500:10:352:-24.1352,0,-38.0553	0/1:64:34,29:34:1179:29:1027:-71.6455,0,-87.065	0/1:51:33,18:33:1165:18:644:-42.1996,0,-89.7965	1/1:19:0,19:0:0:19:654:-57.4853,-5.71957,0	0/1:221:116,105:116:4074:105:3645:-255.711,0,-299.64	1/1:33:0,33:0:0:33:1166:-102.817,-9.93399,0	1/1:236:0,236:0:0:236:8185:-720.222,-71.0431,0	0/1:238:131,107:131:4602:107:3701:-256.825,0,-342.653	0/1:172:105,67:105:3665:67:2349:-156.018,0,-278.129	1/1:62:0,62:0:0:62:2154:-190.624,-18.6639,0	0/1:22:6,16:6:216:16:563:-43.3596,0,-13.1679	1/1:148:0,148:0:0:148:5198:-458.449,-44.5524,0	0/1:163:97,66:97:3424:66:2236:-148.438,0,-258.893	0/1:193:109,84:109:3775:84:2929:-201.602,0,-281.623	0/1:59:42,16:42:1484:16:553:-31.3341,0,-115.621	0/1:60:33,27:33:1154:27:960:-67.1788,0,-86.0132	1/1:31:0,31:0:0:31:1070:-94.0254,-9.33193,0	0/1:76:39,37:39:1389:37:1302:-92.5707,0,-102.378	0/1:33:22,11:22:763:11:389:-24.5755,0,-59.0308	1/1:40:0,40:0:0:40:1399:-123.051,-12.0412,0	0/1:45:23,22:23:785:22:775:-55.2053,0,-57.4173	1/1:29:0,29:0:0:29:1018:-89.9217,-8.72987,0	0/1:82:50,32:50:1758:32:1124:-74.703,0,-133.732	0/1:41:33,8:33:1168:8:288:-13.5368,0,-93.0277	1/1:160:0,159:0:0:159:5485:-484.83,-47.8638,0	1/1:56:0,56:0:0:56:1969:-174.494,-16.8577,0
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chr05	28368287	.	T	G	26693.2	PASS	AB=0.484375;ABP=10.0676;AC=51;AF=0.274194;AN=186;AO=1628;CIGAR=1X;DP=7198;DPB=7198;DPRA=1.02874;EPP=3538.17;EPPR=11972.4;GTI=4;LEN=1;MEANALT=1.08929;MQM=59.7205;MQMR=59.5032;NS=93;NUMALT=1;ODDS=0.477656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58145;QR=199100;RO=5564;RPL=1628;RPP=3538.17;RPPR=11972.4;RPR=0;RUN=1;SAF=1628;SAP=3538.17;SAR=0;SRF=5564;SRP=12085.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:58,2:58:2075:2:72:0,-11.2251,-180.133	0/1:41:22,19:22:792:19:683:-49.435,0,-59.2634	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.192	0/0:252:252,0:252:9029:0:0:0,-75.8596,-811.036	0/1:59:23,36:23:815:36:1264:-96.2944,0,-55.8562	0/1:33:18,15:18:648:15:536:-38.6362,0,-48.7179	0/0:70:70,0:70:2511:0:0:0,-21.0721,-226.208	0/0:170:170,0:170:6082:0:0:0,-51.1751,-545.741	0/1:101:52,49:52:1851:49:1764:-128.632,0,-136.456	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.841	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.245	0/0:94:94,0:94:3332:0:0:0,-28.2968,-299.457	0/1:63:41,22:41:1467:22:792:-52.6326,0,-113.283	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/1:78:39,39:39:1404:39:1361:-99.3009,0,-103.177	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.396	0/1:28:10,18:10:360:18:644:-49.848,0,-24.3072	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3047	0/1:18:8,9:8:288:9:324:-24.0285,0,-20.7901	0/1:92:38,54:38:1359:54:1932:-146.41,0,-94.9151	0/1:69:34,35:34:1224:35:1252:-92.2094,0,-89.6914	0/1:49:18,31:18:648:31:1099:-84.4657,0,-43.9014	0/1:108:55,53:55:1968:53:1870:-136.061,0,-144.868	0/1:41:37,4:37:1332:4:140:-0.602348,0,-107.836	0/0:92:92,0:92:3299:0:0:0,-27.6948,-296.887	0/0:215:213,1:213:7631:1:36:0,-61.1829,-683.196	0/0:245:245,0:245:8775:0:0:0,-73.7523,-789.51	0/1:27:17,10:17:612:10:360:-24.6165,0,-47.2856	0/1:201:93,108:93:3336:108:3857:-286.538,0,-239.439	0/0:140:138,1:138:4935:1:32:0,-38.9835,-440.22	0/0:65:65,0:65:2302:0:0:0,-19.5669,-206.978	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1566	0/1:140:76,64:76:2723:64:2278:-163.128,0,-203.155	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.094	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.174	.:.:.:.:.:.:.:.	0/1:181:96,85:96:3448:85:3048:-220.058,0,-256.037	0/0:45:44,0:44:1565:0:0:0,-13.2453,-140.719	0/1:100:49,51:49:1760:51:1824:-134.272,0,-128.528	0/1:44:19,25:19:675:25:885:-66.7189,0,-47.8293	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.494	0/0:135:135,0:135:4830:0:0:0,-40.639,-433.631	0/1:128:68,60:68:2429:60:2148:-155.046,0,-180.27	0/0:188:186,1:186:6653:1:36:0,-53.054,-595.207	0/1:57:26,31:26:936:31:1104:-82.5096,0,-67.3831	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.033	0/1:57:19,38:19:680:38:1359:-105.437,0,-44.3672	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:84:46,38:46:1656:38:1364:-97.7497,0,-124.034	0/0:79:79,0:79:2835:0:0:0,-23.7814,-255.368	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.961	0/1:39:24,15:24:864:15:540:-37.1964,0,-66.3378	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9804	0/0:76:76,0:76:2711:0:0:0,-22.8783,-244.117	0/1:75:44,31:44:1580:31:1112:-77.7978,0,-119.91	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:175:175,0:175:6249:0:0:0,-52.6802,-561.388	0/1:156:78,78:78:2787:78:2767:-202.302,0,-204.102	0/1:77:41,36:41:1472:36:1292:-93.3952,0,-109.583	0/1:64:35,29:35:1260:29:1040:-74.6484,0,-94.4258	0/0:130:129,1:129:4591:1:36:0,-35.5356,-409.691	0/0:151:145,5:145:5176:5:180:0,-28.8536,-449.399	0/1:27:17,10:17:597:10:360:-24.6165,0,-45.9106	0/1:40:17,23:17:608:23:817:-61.8089,0,-42.9823	0/1:41:23,18:23:828:18:644:-45.9462,0,-62.4995	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:128:71,57:71:2548:57:2036:-144.972,0,-190.956	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.546	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.269	0/1:95:59,36:59:2097:36:1284:-87.2585,0,-160.4	0/1:113:55,58:55:1972:58:2076:-153.086,0,-143.7	0/0:86:86,0:86:3069:0:0:0,-25.8886,-276.418	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:167:166,1:166:5945:1:36:0,-46.6737,-531.058	0/1:90:46,44:46:1648:44:1584:-115.759,0,-121.486	0/1:139:69,70:69:2476:70:2504:-183.767,0,-181.139	0/1:40:26,14:26:936:14:504:-33.6522,0,-72.4709	0/1:58:30,28:30:1071:28:1008:-73.5672,0,-79.2419	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.188	0/1:104:55,49:55:1976:49:1738:-125.393,0,-146.784	0/1:19:12,7:12:428:7:252:-17.1168,0,-33.1392	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.114	0/1:68:43,25:43:1517:25:900:-60.851,0,-116.343	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9557	0/1:48:23,25:23:824:25:900:-66.867,0,-60.0192	0/1:66:25,41:25:900:41:1463:-112.085,0,-61.4483	0/0:142:142,0:142:5100:0:0:0,-42.7463,-459.034	0/0:112:112,0:112:4002:0:0:0,-33.7154,-360.364
chr05	28368292	.	TGC	CGT,TGT	154101	PASS	AB=0.513213,0.484084;ABP=8.06011,10.3372;AC=136,50;AF=0.731183,0.268817;AN=186;AO=5659,1632;CIGAR=1X1M1X,2M1X;DP=7318;DPB=7318;DPRA=40.1868,1.02341;EPP=12248,3546.85;EPPR=7.35324;GTI=3;LEN=3,1;MEANALT=1.83516,2.125;MQM=59.4702,59.685;MQMR=60;NS=93;NUMALT=2;ODDS=0.00241776;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=198111,58330;QR=72;RO=2;RPL=5654,1632;RPP=12248,3546.85;RPPR=7.35324;RPR=5,0;RUN=1,1;SAF=5659,1632;SAP=12291.4,3546.85;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:60:0,57,2:0:0:57,2:2016,72:-181.311,-17.1587,0,-175.435,-11.2839,-174.833	1/2:41:0,22,19:0:0:22,19:771,666:-117.263,-54.5268,-47.9042,-63.0863,0,-57.3667	1/1:54:0,54,0:0:0:54,0:1893,0:-170.573,-16.2556,0,-170.573,-16.2556,-170.573	1/1:253:0,253,0:0:0:253,0:8851,0:-795.959,-76.1606,0,-795.959,-76.1606,-795.959	1/2:60:0,24,36:0:0:24,36:837,1296:-174.158,-106.102,-98.8775,-68.4085,0,-57.5714	1/2:32:0,18,14:0:0:18,14:619,504:-91.7421,-41.4837,-36.0651,-50.6112,0,-46.3968	1/1:71:0,71,0:0:0:71,0:2458,0:-221.469,-21.3731,0,-221.469,-21.3731,-221.469	1/1:177:0,176,0:0:0:176,0:6136,0:-551.04,-52.9813,0,-551.04,-52.9813,-551.04	1/2:100:0,51,48:0:0:51,48:1809,1709:-286.809,-139.433,-124.08,-147.526,0,-133.077	1/1:88:0,88,0:0:0:88,0:3023,0:-271.989,-26.4906,0,-271.989,-26.4906,-271.989	1/1:38:0,38,0:0:0:38,0:1332,0:-120.174,-11.4391,0,-120.174,-11.4391,-120.174	1/1:94:0,94,0:0:0:94,0:3251,0:-292.684,-28.2968,0,-292.684,-28.2968,-292.684	1/2:64:0,42,22:0:0:42,22:1478,788:-184.851,-64.6139,-51.9707,-120.592,0,-113.97	1/2:28:0,11,17:0:0:11,17:379,612:-81.0741,-50.2959,-46.9846,-31.1287,0,-26.0111	1/2:82:0,42,40:0:0:42,40:1462,1435:-236.189,-117.317,-104.673,-119.226,0,-107.185	1/1:65:0,65,0:0:0:65,0:2289,0:-206.092,-19.567,0,-206.092,-19.567,-206.092	1/2:29:0,10,19:0:0:10,19:350,676:-83.9011,-55.4346,-52.4243,-28.8182,0,-23.0986	1/1:25:0,25,0:0:0:25,0:881,0:-79.5967,-7.52575,0,-79.5967,-7.52575,-79.5967	1/2:20:1,9,10:1:36:9,10:319,341:-50.4037,-24.7102,-24.9401,-23.0451,0,-22.9728	1/2:91:0,38,53:0:0:38,53:1331,1904:-263.926,-155.631,-144.192,-108.648,0,-92.6937	1/2:71:0,35,36:0:0:35,36:1227,1287:-205.128,-105.291,-94.7551,-100.191,0,-89.3536	1/2:48:0,18,30:0:0:18,30:624,1076:-138.832,-88.1187,-82.7001,-51.0648,0,-42.0339	1/2:107:0,55,52:0:0:55,52:1897,1868:-306.83,-152.743,-136.187,-154.439,0,-138.786	1/1:40:0,37,3:0:0:37,3:1293,108:-116.304,-11.1381,0,-107.491,-1.96603,-106.588	1/1:92:0,91,0:0:0:91,0:3142,0:-282.704,-27.3937,0,-282.704,-27.3937,-282.704	1/1:219:0,217,2:0:0:217,2:7636,72:-686.909,-65.3235,0,-681.035,-59.0898,-680.433	1/1:249:0,248,0:0:0:248,0:8727,0:-785.069,-74.6554,0,-785.069,-74.6554,-785.069	1/2:27:0,17,10:0:0:17,10:598,360:-78.4088,-29.734,-24.6165,-49.0316,0,-46.0213	1/2:206:0,97,109:0:0:97,109:3429,3877:-594.571,-315.781,-286.581,-279.144,0,-246.332	1/1:142:0,141,1:0:0:141,1:4939,36:-444.152,-42.4452,0,-441.215,-39.148,-440.913	1/1:66:0,66,0:0:0:66,0:2292,0:-206.35,-19.868,0,-206.35,-19.868,-206.35	1/1:2:0,2,0:0:0:2,0:70,0:-6.64733,-0.60206,0,-6.64733,-0.60206,-6.64733	1/1:19:0,19,0:0:0:19,0:676,0:-61.1684,-5.71957,0,-61.1684,-5.71957,-61.1684	1/1:6:0,6,0:0:0:6,0:211,0:-19.3335,-1.80618,0,-19.3335,-1.80618,-19.3335	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:5:0,5,0:0:0:5,0:172,0:-15.7718,-1.50515,0,-15.7718,-1.50515,-15.7718	1/2:140:0,76,63:0:0:76,63:2628,2231:-395.342,-181.808,-158.93,-213.613,0,-194.648	1/1:77:0,77,0:0:0:77,0:2705,0:-243.683,-23.1793,0,-243.683,-23.1793,-243.683	1/1:37:0,37,0:0:0:37,0:1320,0:-119.093,-11.1381,0,-119.093,-11.1381,-119.093	.:.:.:.:.:.:.:.	1/2:185:0,99,85:0:0:99,85:3457,3051:-530.049,-248.863,-219.061,-281.181,0,-255.593	1/1:45:0,45,0:0:0:45,0:1576,0:-141.989,-13.5464,0,-141.989,-13.5464,-141.989	1/2:105:0,51,54:0:0:51,54:1805,1905:-302.347,-155.333,-139.98,-147.367,0,-131.111	1/2:45:0,21,24:0:0:21,24:714,860:-128.208,-70.4971,-64.1755,-58.0591,0,-50.8343	1/1:57:0,57,0:0:0:57,0:1980,0:-178.456,-17.1587,0,-178.456,-17.1587,-178.456	1/1:137:0,135,0:0:0:135,0:4744,0:-426.268,-40.6391,0,-426.268,-40.6391,-426.268	1/2:126:0,67,59:0:0:67,59:2322,2105:-360.644,-171.944,-151.775,-189.051,0,-171.291	1/1:194:0,193,1:0:0:193,1:6764,36:-608.441,-58.0988,0,-605.504,-54.8015,-605.203	1/2:58:0,27,31:0:0:27,31:956,1112:-168.911,-91.0571,-82.9293,-78.2098,0,-68.8779	1/1:80:0,78,0:0:0:78,0:2715,0:-244.255,-23.4803,0,-244.255,-23.4803,-244.255	1/2:58:0,19,39:0:0:19,39:682,1385:-168.822,-113.193,-107.473,-55.987,0,-44.2469	1/2:5:0,3,2:0:0:3,2:103,72:-14.5883,-6.23466,-5.33157,-8.70681,0,-8.10475	1/2:84:0,46,38:0:0:46,38:1649,1368:-246.441,-111.957,-98.1098,-134.843,0,-123.404	1/1:84:0,84,0:0:0:84,0:2921,0:-262.891,-25.2865,0,-262.891,-25.2865,-262.891	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/1:90:0,89,0:0:0:89,0:3141,0:-282.694,-26.7917,0,-282.694,-26.7917,-282.694	1/2:40:0,25,15:0:0:25,15:894,540:-117.312,-44.4211,-36.8953,-73.2498,0,-68.7344	2/2:2:0,0,2:0:0:0,2:0,63:-5.98315,-5.98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chr05	28368323	.	A	T	43598.9	PASS	AB=0.488847;ABP=8.77417;AC=51;AF=0.271277;AN=188;AO=2638;CIGAR=1X;DP=10823;DPB=10823;DPRA=1.01054;EPP=5731.35;EPPR=17743.9;GTI=2;LEN=1;MEANALT=1.08065;MQM=53.6217;MQMR=59.5592;NS=94;NUMALT=1;ODDS=0.0172266;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94533;QR=291795;RO=8178;RPL=0;RPP=5731.35;RPPR=17700.6;RPR=2638;RUN=1;SAF=0;SAP=5731.35;SAR=2638;SRF=5;SRP=17717.9;SRR=8173;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.213	0/1:163:86,74:86:3060:74:2660:-190.132,0,-227.096	0/0:173:173,0:173:6166:0:0:0,-52.0782,-554.92	0/0:243:242,1:242:8672:1:36:0,-69.6476,-776.899	0/1:96:47,49:47:1683:49:1760:-129.426,0,-122.853	0/1:44:34,10:34:1207:10:360:-19.2332,0,-95.5844	0/0:133:133,0:133:4755:0:0:0,-40.037,-427.044	0/0:154:153,1:153:5445:1:36:0,-42.7694,-486.526	0/1:73:37,36:37:1320:36:1292:-94.3139,0,-97.1186	0/0:175:174,1:174:6198:1:36:0,-49.0846,-554.299	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.62	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.246	0/1:60:35,25:35:1247:25:885:-61.5259,0,-94.4641	0/1:76:34,42:34:1203:42:1508:-112.688,0,-85.6903	0/1:69:29,40:29:1044:40:1436:-108.418,0,-73.5014	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.173	0/1:67:32,35:32:1120:35:1256:-92.4361,0,-80.9359	0/0:72:72,0:72:2570:0:0:0,-21.6742,-231.529	0/1:38:23,15:23:824:15:540:-37.186,0,-62.9414	0/1:191:104,87:104:3715:87:3101:-221.104,0,-276.92	0/1:202:90,112:90:3219:112:3997:-298.208,0,-229.112	0/1:124:36,88:36:1283:88:3160:-245.26,0,-77.954	0/1:102:46,56:46:1656:56:1988:-147.988,0,-118.619	0/0:223:210,13:210:7451:13:468:0,-24.7303,-628.046	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.459	0/0:448:448,0:448:16003:0:0:0,-134.861,-1439.24	0/0:276:275,0:275:9812:0:0:0,-82.7832,-882.471	0/1:47:27,20:27:953:20:720:-50.888,0,-71.9349	0/1:313:147,166:147:5248:166:5951:-440.26,0,-378.208	0/0:157:153,4:153:5471:4:144:0,-33.9706,-479.043	0/0:106:106,0:106:3783:0:0:0,-31.9092,-340.562	0/1:10:4,6:4:144:6:216:-16.7521,0,-10.3033	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.399	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82813	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0583	0/1:187:100,87:100:3557:87:3114:-223.778,0,-264.007	0/0:227:227,0:227:8089:0:0:0,-68.3338,-727.969	0/0:75:75,0:75:2651:0:0:0,-22.5772,-238.769	0/1:4:2,2:2:63:2:72:-5.49116,0,-4.77903	0/1:173:73,100:73:2588:100:3582:-269.869,0,-181.055	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3533	0/1:170:95,75:95:3407:75:2676:-188.957,0,-255.575	0/1:75:38,37:38:1347:37:1328:-97.1471,0,-98.9406	0/0:77:77,0:77:2713:0:0:0,-23.1793,-244.362	0/0:134:134,0:134:4789:0:0:0,-40.338,-431.032	0/1:182:81,101:81:2866:101:3632:-270.643,0,-203.264	0/0:166:166,0:166:5924:0:0:0,-49.971,-533.165	0/1:104:78,26:78:2791:26:936:-53.1777,0,-220.113	0/0:185:185,0:185:6610:0:0:0,-55.6905,-594.952	0/1:230:135,95:135:4836:95:3407:-236.18,0,-366.147	0/1:5:4,1:4:144:1:36:-2.08802,0,-11.8061	0/1:136:68,68:68:2420:68:2444:-177.851,0,-177.045	0/0:24:23,1:23:824:1:36:0,-3.63015,-70.8887	0/1:17:11,6:11:396:6:211:-14.0133,0,-30.8652	0/0:168:168,0:168:6017:0:0:0,-50.573,-540.752	0/1:66:27,39:27:972:39:1396:-105.67,0,-67.9299	0/1:12:8,4:8:288:4:144:-9.68566,0,-22.655	0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3333	0/0:80:79,1:79:2831:1:36:0,-20.4932,-250.924	0/1:95:55,40:55:1959:40:1434:-100.328,0,-147.96	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	0/0:355:353,2:353:12604:2:72:0,-100.036,-1126.29	0/1:298:141,157:141:5037:157:5602:-413.73,0,-363.743	0/1:116:63,53:63:2252:53:1900:-135.817,0,-167.866	0/1:113:58,55:58:2072:55:1971:-143.329,0,-152.575	0/0:222:221,1:221:7900:1:36:0,-63.233,-706.916	0/0:148:148,0:148:5297:0:0:0,-44.5524,-476.751	0/1:36:18,18:18:635:18:648:-47.6071,0,-46.4491	0/1:132:66,66:66:2359:66:2372:-173.463,0,-171.613	0/1:84:47,37:47:1688:37:1328:-94.2701,0,-126.893	0/0:32:31,1:31:1108:1:36:0,-6.03728,-96.433	0/1:62:38,24:38:1368:24:860:-58.6708,0,-104.749	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.13	0/0:191:191,0:191:6809:0:0:0,-57.4967,-612.622	0/1:226:103,122:103:3696:122:4388:-326.449,0,-264.638	0/1:183:86,97:86:3080:97:3488:-257.4,0,-222.262	0/0:184:184,0:184:6550:0:0:0,-55.3895,-589.531	0/1:10:7,3:7:252:3:104:-5.87018,0,-20.0047	0/0:168:168,0:168:5987:0:0:0,-50.573,-538.886	0/1:141:77,64:77:2755:64:2292:-161.858,0,-204.757	0/1:257:149,108:149:5339:108:3870:-269.93,0,-402.56	0/1:107:62,45:62:2216:45:1609:-112.472,0,-167.475	0/1:58:34,23:34:1224:23:824:-56.8262,0,-92.9488	0/0:117:117,0:117:4114:0:0:0,-35.2205,-370.413	0/1:135:70,65:70:2512:65:2331:-168.942,0,-185.203	0/1:39:20,19:20:716:19:684:-49.5731,0,-53.0275	0/0:67:67,0:67:2351:0:0:0,-20.169,-211.666	0/1:75:48,27:48:1716:27:968:-64.6253,0,-132.006	0/0:33:32,1:32:1148:1:36:0,-6.34082,-100.008	0/1:64:24,39:24:860:39:1404:-106.885,0,-58.3517	0/1:68:24,44:24:864:44:1568:-120.673,0,-57.6079	0/0:93:93,0:93:3327:0:0:0,-27.9958,-299.593	0/0:129:128,1:128:4567:1:36:0,-35.2372,-407.581
chr05	28421519	.	G	A	39087.5	PASS	AB=0.493026;ABP=5.00923;AC=50;AF=0.265957;AN=188;AO=2348;CIGAR=1X;DP=8938;DPB=8938;DPRA=1.27792;EPP=4349.86;EPPR=13726.1;GTI=0;LEN=1;MEANALT=1.03448;MQM=39.9983;MQMR=59.9309;NS=94;NUMALT=1;ODDS=1.85586;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84195;QR=235075;RO=6585;RPL=90;RPP=4349.86;RPPR=13726.1;RPR=2258;RUN=1;SAF=2348;SAP=5101.63;SAR=0;SRF=6585;SRP=14302.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:134:63,71:63:2233:71:2548:-180.87,0,-160.893	0/0:138:137,0:137:4894:0:0:0,-41.2411,-440.252	0/0:210:209,1:209:7453:1:36:0,-59.7927,-667.354	0/1:62:31,31:31:1108:31:1116:-78.1917,0,-81.3671	0/1:49:35,14:35:1235:14:489:-27.5226,0,-96.703	0/0:192:192,0:192:6859:0:0:0,-57.7978,-617.295	0/0:126:126,0:126:4482:0:0:0,-37.9298,-403.456	0/1:89:43,46:43:1544:46:1652:-117.411,0,-112.453	0/0:97:97,0:97:3451:0:0:0,-29.1999,-310.717	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.997	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.101	0/1:72:36,36:36:1284:36:1292:-90.0923,0,-94.1893	0/1:74:34,40:34:1200:40:1436:-102.133,0,-86.0266	0/1:65:35,30:35:1256:30:1080:-70.3939,0,-93.7783	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.534	0/1:83:35,48:35:1245:48:1728:-124.068,0,-87.3591	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:61:29,32:29:1035:32:1144:-81.8417,0,-75.1002	0/1:202:106,96:106:3793:96:3456:-234.134,0,-280.758	0/1:164:99,65:99:3527:65:2340:-152.855,0,-268.269	0/1:94:38,56:38:1325:56:2008:-144.389,0,-91.232	0/1:57:23,34:23:816:34:1224:-88.1482,0,-56.603	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.153	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.486	0/0:256:253,3:253:9040:3:108:0,-66.9885,-803.504	0/0:122:122,0:122:4358:0:0:0,-36.7257,-392.394	0/1:44:19,25:19:669:25:896:-63.9698,0,-47.284	0/1:240:123,115:123:4370:115:4099:-278.444,0,-321.471	0/0:166:162,4:162:5771:4:144:0,-37.1651,-506.565	0/0:148:147,0:147:5235:0:0:0,-44.2514,-470.557	0/1:11:1,10:1:36:10:356:-27.8348,0,-0.286945	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3779	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1101	0/1:169:73,96:73:2608:96:3448:-243.513,0,-184.093	0/0:126:126,0:126:4482:0:0:0,-37.9298,-403.551	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/1:9:7,2:7:252:2:72:-3.85426,0,-20.3197	0/1:165:80,85:80:2859:85:3042:-211.365,0,-207.877	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.944	0/1:105:54,51:54:1924:51:1828:-126.193,0,-141.829	0/1:142:77,65:77:2768:65:2336:-155.532,0,-206.604	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:152:81,71:81:2908:71:2544:-172.194,0,-216.19	0/0:175:175,0:175:6246:0:0:0,-52.6802,-562.227	0/1:121:70,51:70:2508:51:1832:-121.155,0,-189.548	0/0:141:140,1:140:4994:1:36:0,-39.0216,-446.14	0/1:168:94,74:94:3380:74:2656:-176.695,0,-253.833	0/1:7:4,3:4:135:3:108:-7.25863,0,-10.3753	0/1:138:86,52:86:3080:52:1849:-118.551,0,-235.886	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:19:5,14:5:176:14:504:-37.8099,0,-10.4654	0/0:147:147,0:147:5280:0:0:0,-44.2514,-475.329	0/1:23:11,12:11:392:12:428:-30.3055,0,-28.6964	0/1:9:5,4:5:180:4:144:-9.95806,0,-13.8428	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.551	0/1:143:82,61:82:2939:61:2183:-144.246,0,-221.696	0/1:6:4,2:4:144:2:72:-4.69866,0,-11.5074	0/0:162:162,0:162:5787:0:0:0,-48.7669,-520.945	0/1:147:80,67:80:2855:67:2408:-160.483,0,-212.934	0/1:59:25,34:25:892:34:1224:-87.1721,0,-62.8389	0/1:79:34,45:34:1209:45:1616:-113.388,0,-85.3297	0/0:176:174,2:174:6195:2:72:0,-46.4764,-551.118	0/0:113:112,1:112:3987:1:36:0,-30.5928,-355.597	0/1:38:18,20:18:644:20:720:-51.0871,0,-46.8515	0/1:119:62,57:62:2216:57:2052:-141.208,0,-163.874	0/1:79:31,48:31:1103:48:1724:-123.975,0,-75.7984	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:113:62,50:62:2199:50:1792:-121.264,0,-164.092	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:154:154,0:154:5511:0:0:0,-46.3586,-496.116	0/1:190:107,83:107:3828:83:2984:-197.666,0,-287.517	0/1:74:22,52:22:784:52:1864:-139.583,0,-48.6077	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.546	0/1:24:10,14:10:352:14:504:-36.9801,0,-24.7935	0/0:124:123,1:123:4396:1:36:0,-33.8732,-392.359	0/1:128:70,58:70:2504:58:2076:-142.762,0,-187.08	0/1:178:93,85:93:3316:85:3028:-201.76,0,-245.076	0/1:92:45,47:45:1600:47:1684:-116.722,0,-116.595	0/1:69:36,33:36:1292:33:1188:-79.8526,0,-95.8042	0/0:86:86,0:86:3050:0:0:0,-25.8886,-274.723	0/1:125:69,56:69:2468:56:2012:-133.75,0,-184.745	0/1:57:28,29:28:1008:29:1044:-73.8242,0,-73.8776	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/1:73:37,36:37:1332:36:1279:-89.8276,0,-98.2072	0/0:49:49,0:49:1728:0:0:0,-14.7505,-155.802	0/1:97:49,48:49:1742:48:1714:-116.071,0,-127.863	0/1:114:35,79:35:1256:79:2832:-208.699,0,-79.0217	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.342	0/0:98:96,2:96:3440:2:72:0,-22.9961,-303.308
chr05	28421582	.	CCCT	TCCT	94211.7	PASS	AB=0.496782;ABP=3.31779;AC=138;AF=0.734043;AN=188;AO=4553;CIGAR=1X3M;DP=6305;DPB=6305;DPRA=27.3913;EPP=9881.04;EPPR=3748.8;GTI=1;LEN=1;MEANALT=1.25;MQM=59.9888;MQMR=59.9855;NS=94;NUMALT=1;ODDS=0.28576;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162705;QR=60558;RO=1725;RPL=0;RPP=9889.72;RPPR=3748.8;RPR=4553;RUN=1;SAF=1;SAP=9881.04;SAR=4552;SRF=0;SRP=3748.8;SRR=1725;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:83:37,46:37:1290:46:1648:-123.623,0,-91.412	1/1:147:0,146:0:0:146:5244:-471.735,-43.9504,0	1/1:119:0,119:0:0:119:4241:-381.87,-35.8226,0	0/1:41:13,28:13:439:28:1008:-78.6941,0,-27.4905	0/1:24:9,15:9:315:15:540:-41.7118,0,-21.4628	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:82:0,81:0:0:81:2874:-258.495,-24.3834,0	0/1:93:35,58:35:1245:58:2067:-158.305,0,-84.3589	1/1:58:2,56:2:72:56:2008:-174.157,-10.623,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:72:1,71:1:30:71:2529:-224.861,-18.6746,0	0/1:62:38,24:38:1331:24:858:-58.8774,0,-101.423	0/1:64:24,40:24:838:40:1423:-109.101,0,-56.4717	0/1:66:29,36:29:1035:36:1292:-96.657,0,-73.5372	1/1:42:0,41:0:0:41:1458:-131.214,-12.3422,0	0/1:71:38,33:38:1318:33:1180:-85.1349,0,-97.544	1/1:60:0,60:0:0:60:2116:-190.707,-18.0618,0	0/1:38:22,16:22:751:16:572:-40.3743,0,-56.4657	0/1:93:50,42:50:1782:42:1493:-106.609,0,-132.608	0/1:96:45,51:45:1589:51:1824:-135.542,0,-114.401	0/1:49:33,16:33:1159:16:576:-37.4245,0,-89.8647	0/1:46:20,26:20:716:26:921:-69.3578,0,-50.9205	1/1:65:1,64:1:36:64:2296:-203.303,-15.9687,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:152:2,149:2:66:149:5309:-471.665,-39.5374,0	1/1:149:0,147:0:0:147:5224:-469.964,-44.2514,0	0/1:40:24,16:24:851:16:572:-39.7722,0,-64.8685	0/1:170:70,99:70:2473:99:3544:-267.934,0,-171.588	1/1:60:1,59:1:30:59:2116:-187.709,-15.0622,0	1/1:51:1,50:1:36:50:1788:-157.604,-11.7543,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:1,11:1:36:11:392:-32.0218,-0.0140851,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:165:91,74:91:3175:74:2644:-188.535,0,-236.307	1/1:118:0,118:0:0:118:4213:-379.349,-35.5215,0	1/1:68:0,66:0:0:66:2372:-213.417,-19.868,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:106:54,52:54:1906:52:1868:-136.49,0,-139.908	1/1:51:0,51:0:0:51:1830:-164.981,-15.3525,0	0/1:86:50,35:50:1762:35:1252:-87.0378,0,-132.915	0/1:73:44,28:44:1526:28:1004:-68.6419,0,-115.595	1/1:54:1,52:1:36:52:1840:-162.28,-12.7161,0	1/1:66:0,65:0:0:65:2313:-208.177,-19.567,0	0/1:128:69,59:69:2432:59:2101:-150.826,0,-180.604	1/1:110:0,110:0:0:110:3925:-353.442,-33.1133,0	0/1:75:29,46:29:1009:46:1656:-126.751,0,-68.5417	1/1:72:0,68:0:0:68:2435:-219.057,-20.47,0	0/1:112:54,58:54:1898:58:2075:-153.304,0,-137.381	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:84:43,41:43:1497:41:1468:-107.13,0,-109.733	1/1:4:0,4:0:0:4:136:-12.575,-1.20412,0	0/1:23:11,12:11:394:12:419:-31.1196,0,-28.8779	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	0/1:33:14,18:14:503:18:644:-48.4493,0,-35.7641	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:97:57,40:57:1981:40:1440:-100.698,0,-149.361	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:139:0,139:0:0:139:4959:-446.459,-41.8432,0	0/1:93:37,56:37:1319:56:2016:-153.717,0,-91.0161	0/1:71:26,44:26:896:44:1580:-121.06,0,-59.5206	0/1:42:24,18:24:848:18:644:-45.6473,0,-63.9963	1/1:83:0,83:0:0:83:2965:-267.082,-24.9855,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:19:13,6:13:455:6:216:-14.0709,0,-35.5632	0/1:64:34,30:34:1194:30:1080:-78.2473,0,-88.497	0/1:73:44,29:44:1527:29:1044:-72.2996,0,-115.742	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	0/1:92:43,49:43:1496:49:1760:-130.989,0,-107.235	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	1/1:95:0,95:0:0:95:3400:-306.193,-28.5979,0	0/1:110:55,55:55:1943:55:1964:-143.922,0,-142.033	0/1:122:64,57:64:2252:57:2040:-147.088,0,-166.159	1/1:91:0,90:0:0:90:3213:-289.032,-27.0927,0	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.575	1/1:69:0,69:0:0:69:2466:-222.193,-20.7711,0	0/1:65:31,32:31:1094:32:1123:-82.0514,0,-79.4444	0/1:150:69,80:69:2392:80:2857:-212.145,0,-170.322	0/1:67:28,39:28:993:39:1396:-105.77,0,-69.5156	0/1:59:36,23:36:1260:23:824:-56.7225,0,-95.9407	1/1:77:1,75:1:36:75:2683:-238.17,-19.5849,0	0/1:110:60,50:60:2129:50:1788:-128.089,0,-158.765	0/1:37:16,21:16:564:21:740:-55.7853,0,-39.952	1/1:92:0,92:0:0:92:3278:-295.237,-27.6948,0	0/1:72:35,37:35:1247:37:1319:-97.337,0,-90.8608	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:83:49,34:49:1698:34:1205:-83.7684,0,-128.116	0/1:59:40,19:40:1414:19:680:-43.7684,0,-109.795	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0
chr05	28430302	.	G	A	41141.1	PASS	AB=0.50541;ABP=4.23204;AC=48;AF=0.258065;AN=186;AO=2441;CIGAR=1X;DP=9314;DPB=9314;DPRA=1.26962;EPP=5303.57;EPPR=14877.6;GTI=1;LEN=1;MEANALT=1.03571;MQM=59.9943;MQMR=59.9964;NS=93;NUMALT=1;ODDS=1.7742;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87219;QR=244444;RO=6870;RPL=0;RPP=5303.57;RPPR=14903.7;RPR=2441;RUN=1;SAF=0;SAP=5303.57;SAR=2441;SRF=3;SRP=14895;SRR=6867;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/1:140:80,60:80:2816:60:2131:-149.912,0,-211.533	0/0:123:123,0:123:4400:0:0:0,-37.0267,-396.17	0/0:226:225,1:225:8029:1:36:0,-64.4345,-719.033	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:47:17,30:17:612:30:1072:-82.644,0,-41.265	0/0:116:116,0:116:4092:0:0:0,-34.9195,-368.466	0/0:183:183,0:183:6484:0:0:0,-55.0885,-583.646	0/1:106:64,42:64:2256:42:1500:-103.385,0,-171.39	0/0:146:146,0:146:5183:0:0:0,-43.9504,-466.609	0/0:49:49,0:49:1721:0:0:0,-14.7505,-155.17	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/1:94:37,57:37:1313:57:2048:-156.295,0,-90.1729	0/1:84:42,42:42:1491:42:1504:-110.368,0,-109.197	0/1:94:39,55:39:1387:55:1963:-148.648,0,-96.8313	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:68:34,34:34:1199:34:1224:-89.997,0,-87.7448	0/0:88:88,0:88:3132:0:0:0,-26.4906,-282.105	0/1:42:25,17:25:870:17:604:-42.0473,0,-65.9713	0/1:284:138,146:138:4922:146:5213:-383.816,0,-357.639	0/1:173:84,89:84:2992:89:3189:-235.153,0,-217.432	0/1:79:19,60:19:684:60:2135:-168.636,0,-38.109	0/1:77:44,32:44:1572:32:1144:-80.1768,0,-118.68	0/0:37:36,1:36:1273:1:36:0,-7.53983,-111.273	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.82	0/0:292:291,1:291:10370:1:36:0,-84.3025,-929.624	0/0:213:212,1:212:7572:1:36:0,-60.5211,-677.921	0/1:39:21,18:21:748:18:639:-46.0981,0,-55.9051	0/1:226:113,113:113:4013:113:4060:-297.553,0,-293.325	0/0:115:111,4:111:3980:4:144:0,-21.3048,-345.076	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.08	.:.:.:.:.:.:.:.	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:238:94,144:94:3341:144:5146:-391.636,0,-229.262	0/0:198:198,0:198:7021:0:0:0,-59.6039,-631.955	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:177:84,93:84:2974:93:3314:-245.194,0,-214.609	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/1:110:50,60:50:1774:60:2145:-160.203,0,-126.828	0/1:116:59,57:59:2094:57:2037:-148.682,0,-153.809	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:126:126,0:126:4493:0:0:0,-37.9298,-404.539	0/1:100:53,47:53:1865:47:1646:-118.321,0,-138.022	0/0:159:158,1:158:5646:1:36:0,-44.2655,-504.662	0/1:133:75,58:75:2660:58:2075:-146.983,0,-199.608	0/0:126:125,1:125:4471:1:36:0,-34.3315,-398.961	0/1:192:90,102:90:3167:102:3633:-269.375,0,-227.455	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:124:74,50:74:2624:50:1796:-124.595,0,-199.078	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:26:10,16:10:360:16:572:-43.9866,0,-24.9175	0/0:152:150,2:150:5333:2:72:0,-38.9198,-473.269	0/1:62:41,21:41:1461:21:746:-48.8007,0,-113.12	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/1:104:59,45:59:2103:45:1620:-114.783,0,-158.232	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:270:269,0:269:9535:0:0:0,-80.9771,-857.854	0/1:154:83,71:83:2976:71:2538:-182.311,0,-221.714	0/1:90:58,32:58:2066:32:1144:-76.1768,0,-159.117	0/1:109:66,42:66:2353:42:1512:-103.65,0,-179.304	0/0:159:159,0:159:5677:0:0:0,-47.8638,-511.049	0/0:120:120,0:120:4295:0:0:0,-36.1236,-386.727	0/1:26:17,9:17:584:9:324:-21.6791,0,-45.054	0/1:96:57,39:57:2018:39:1396:-97.0402,0,-152.993	0/1:91:43,48:43:1511:48:1702:-126.071,0,-108.886	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:64:43,21:43:1527:21:752:-48.7403,0,-118.456	0/0:90:90,0:90:3173:0:0:0,-27.0927,-285.794	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/1:179:87,92:87:3101:92:3284:-241.893,0,-225.432	0/1:55:17,38:17:597:38:1360:-106.136,0,-37.4995	0/0:144:144,0:144:5136:0:0:0,-43.3483,-462.381	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/0:135:135,0:135:4797:0:0:0,-40.639,-431.888	0/1:120:62,58:62:2223:58:2071:-150.536,0,-164.21	0/1:196:89,107:89:3169:107:3804:-283.554,0,-226.432	0/1:115:54,61:54:1931:61:2184:-162.208,0,-139.447	0/1:77:35,42:35:1241:42:1495:-111.665,0,-88.8132	0/0:125:125,0:125:4447:0:0:0,-37.6287,-400.4	0/1:154:80,74:80:2842:74:2638:-191.307,0,-209.66	0/1:47:20,27:20:711:27:972:-73.6495,0,-50.1672	0/0:108:108,0:108:3842:0:0:0,-32.5112,-345.974	0/1:75:32,43:32:1144:43:1544:-116.676,0,-80.6923	0/0:33:33,0:33:1129:0:0:0,-9.93399,-101.91	0/1:68:32,36:32:1139:36:1296:-96.4739,0,-82.3483	0/1:91:27,64:27:972:64:2283:-178.338,0,-60.4042	0/0:111:111,0:111:3979:0:0:0,-33.4143,-358.299	0/0:99:99,0:99:3522:0:0:0,-29.802,-317.19
chr05	28434025	.	G	A	129794	PASS	AB=0.539264;ABP=56.8956;AC=137;AF=0.728723;AN=188;AO=6138;CIGAR=1X;DP=8010;DPB=8010;DPRA=21.5215;EPP=13236.1;EPPR=4050.64;GTI=5;LEN=1;MEANALT=1.04301;MQM=59.9635;MQMR=59.9925;NS=94;NUMALT=1;ODDS=1.54778;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219389;QR=66805;RO=1868;RPL=11;RPP=13236.1;RPPR=4050.64;RPR=6127;RUN=1;SAF=6138;SAP=13331.5;SAR=0;SRF=1868;SRP=4059.32;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1005:-90.7557,-8.72987,0	0/1:129:50,79:50:1769:79:2817:-214.935,0,-120.658	1/1:83:0,83:0:0:83:2965:-267.082,-24.9855,0	1/1:180:1,179:1:36:179:6383:-570.959,-50.5871,0	0/1:67:31,36:31:1112:36:1277:-95.0621,0,-80.2223	0/1:70:27,42:27:960:42:1493:-113.533,0,-65.5855	1/1:142:0,142:0:0:142:5049:-454.537,-42.7463,0	1/1:168:0,167:0:0:167:5970:-537.076,-50.272,0	0/1:89:27,62:27:957:62:2224:-173.632,0,-59.6522	1/1:64:0,64:0:0:64:2270:-204.559,-19.2659,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	0/1:40:16,24:16:576:24:860:-65.6806,0,-40.1338	0/1:43:17,26:17:612:26:932:-71.2546,0,-42.4691	0/1:35:16,19:16:576:19:684:-51.3543,0,-41.6389	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:50:25,25:25:896:25:896:-65.9089,0,-65.9089	1/1:38:0,38:0:0:38:1353:-122.068,-11.4391,0	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	0/1:171:84,87:84:2999:87:3113:-228.692,0,-218.665	0/1:145:47,98:47:1692:98:3524:-273.719,0,-108.918	0/1:113:73,40:73:2607:40:1428:-94.8011,0,-200.861	0/1:23:13,10:13:468:10:345:-24.4571,0,-35.536	0/1:87:8,79:8:288:79:2844:-230.008,0,-0.0777969	1/1:51:0,51:0:0:51:1813:-163.176,-15.3525,0	1/1:327:1,326:1:36:326:11682:-1047.64,-94.8385,0	1/1:231:0,231:0:0:231:8264:-743.762,-69.5379,0	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/1:243:138,105:138:4940:105:3749:-264.459,0,-371.6	1/1:124:3,121:3:108:121:4314:-378.36,-27.2526,0	1/1:109:0,109:0:0:109:3901:-351.277,-32.8123,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:123:63,60:63:2264:60:2156:-157.28,0,-166.996	1/1:171:0,171:0:0:171:6036:-543.313,-51.4761,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:128:59,69:59:2100:69:2461:-183.211,0,-150.735	1/1:39:1,38:1:36:38:1360:-119.102,-8.1419,0	0/1:120:42,78:42:1508:78:2748:-211.433,0,-99.891	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	1/1:41:0,41:0:0:41:1464:-132.055,-12.3422,0	1/1:101:0,101:0:0:101:3616:-325.645,-30.404,0	0/1:96:48,48:48:1686:48:1716:-125.827,0,-123.123	1/1:215:0,215:0:0:215:7711:-694.019,-64.7215,0	0/1:153:73,79:73:2594:79:2825:-208.519,0,-187.737	1/1:113:0,113:0:0:113:4025:-362.438,-34.0164,0	0/1:182:82,100:82:2940:100:3577:-267.348,0,-210.046	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:128:50,78:50:1788:78:2784:-212.267,0,-122.671	1/1:45:0,45:0:0:45:1620:-146.079,-13.5464,0	0/1:14:2,12:2:68:12:428:-34.6444,0,-2.24329	1/1:138:0,138:0:0:138:4914:-442.397,-41.5421,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:33:0,33:0:0:33:1165:-105.155,-9.93399,0	1/1:95:1,94:1:36:94:3347:-297.847,-24.9996,0	0/1:109:55,54:55:1949:54:1944:-142.424,0,-142.872	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:202:0,202:0:0:202:7220:-649.853,-60.8081,0	0/1:204:103,101:103:3708:101:3624:-264.955,0,-272.51	0/1:86:43,43:43:1540:43:1533:-112.373,0,-113.004	0/1:63:39,24:39:1392:24:864:-59.1177,0,-106.614	1/1:139:4,135:4:144:135:4851:-423.428,-28.5296,0	1/1:172:1,171:1:36:171:6136:-548.74,-48.1789,0	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	0/1:77:35,42:35:1252:42:1491:-111.304,0,-89.8058	0/1:63:29,34:29:1032:34:1214:-90.6,0,-74.2286	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:143:67,76:67:2412:76:2713:-201.366,0,-174.289	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:157:0,157:0:0:157:5606:-504.661,-47.2617,0	0/1:118:58,60:58:2075:60:2145:-157.795,0,-151.498	0/1:132:43,89:43:1521:89:3180:-246.688,0,-97.4451	1/1:114:1,113:1:36:113:4049:-360.997,-30.7191,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:103:0,103:0:0:103:3704:-333.56,-31.0061,0	0/1:93:45,48:45:1616:48:1705:-125.738,0,-117.698	0/1:202:87,115:87:3116:115:4121:-310.264,0,-219.859	0/1:69:38,31:38:1368:31:1116:-79.9806,0,-102.65	0/1:40:22,18:22:792:18:648:-46.6107,0,-59.5645	1/1:50:0,50:0:0:50:1785:-160.931,-15.0515,0	0/1:89:42,47:42:1500:47:1684:-125.051,0,-108.503	0/1:32:26,6:26:928:6:216:-10.1576,0,-74.2053	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:38:20,18:20:716:18:648:-47.2127,0,-53.3286	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:58:27,30:27:968:30:1069:-78.8438,0,-69.9189	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	1/1:108:0,108:0:0:108:3861:-347.684,-32.5112,0	1/1:47:0,47:0:0:47:1686:-152.027,-14.1484,0
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chr05	28566788	.	T	G	39807.9	PASS	AB=0.533034;ABP=43.181;AC=49;AF=0.260638;AN=188;AO=2274;CIGAR=1X;DP=7739;DPB=7739;DPRA=1.21453;EPP=4760.22;EPPR=11540;GTI=2;LEN=1;MEANALT=1.05357;MQM=59.931;MQMR=59.9875;NS=94;NUMALT=1;ODDS=1.51256;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81154;QR=195349;RO=5460;RPL=22;RPP=4751.7;RPPR=11531.5;RPR=2252;RUN=1;SAF=1;SAP=4932.26;SAR=2273;SRF=1;SRP=11850.6;SRR=5459;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:71:36,35:36:1277:35:1248:-91.2517,0,-93.858	0/0:100:99,1:99:3556:1:36:0,-26.5047,-316.649	0/0:206:206,0:206:7358:0:0:0,-62.0122,-662.266	0/1:24:15,9:15:536:9:318:-21.7356,0,-41.3501	0/1:36:12,24:12:432:24:846:-65.6022,0,-28.3841	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/0:141:141,0:141:5034:0:0:0,-42.4452,-453.204	0/1:47:23,24:23:824:24:860:-63.5734,0,-60.3267	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.985	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:68:34,34:34:1224:34:1220:-89.6368,0,-89.997	0/1:136:60,76:60:2152:76:2724:-204.463,0,-153.007	0/1:62:30,32:30:1080:32:1140:-84.2453,0,-78.8494	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:97:42,55:42:1489:55:1961:-147.555,0,-105.103	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/1:94:49,45:49:1749:45:1612:-117.073,0,-129.395	0/1:124:53,71:53:1904:71:2531:-190.713,0,-134.31	0/1:88:29,59:29:1040:59:2108:-163.497,0,-67.4237	0/1:41:21,20:21:741:20:712:-52.0644,0,-54.6694	0/0:77:73,4:73:2620:4:140:0,-10.2347,-223.103	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:178:178,0:178:6381:0:0:0,-53.5833,-574.376	0/0:165:165,0:165:5887:0:0:0,-49.6699,-529.937	0/1:48:30,18:30:1072:18:644:-43.8412,0,-82.343	0/1:164:88,76:88:3137:76:2723:-195.939,0,-233.186	0/0:132:131,1:131:4701:1:36:0,-36.1377,-419.649	0/0:97:97,0:97:3465:0:0:0,-29.1999,-312.061	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:261:131,130:131:4697:130:4659:-340.902,0,-344.319	0/0:177:175,0:175:6245:0:0:0,-52.6802,-561.806	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:114:62,52:62:2228:52:1868:-134.082,0,-166.466	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:73:23,50:23:824:50:1800:-140.307,0,-52.5081	0/1:90:32,58:32:1152:58:2088:-161.097,0,-76.8974	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/1:80:34,46:34:1209:46:1630:-122.906,0,-85.0317	0/0:115:110,5:110:3930:5:180:0,-18.0664,-337.337	0/1:86:33,53:33:1172:53:1904:-145.749,0,-79.8989	0/0:134:134,0:134:4792:0:0:0,-40.338,-431.33	0/1:208:107,101:107:3822:101:3610:-262.255,0,-281.56	0/1:14:3,11:3:104:11:392:-31.4056,0,-5.48839	0/1:106:51,54:51:1828:54:1944:-143.415,0,-132.98	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/1:31:10,21:10:356:21:756:-59.0353,0,-23.0493	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.772	0/1:31:16,15:16:557:15:520:-37.796,0,-41.1236	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:151:71,80:71:2552:80:2871:-213.17,0,-184.474	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/1:145:65,80:65:2317:80:2868:-214.707,0,-165.139	0/1:59:24,35:24:848:35:1256:-95.5845,0,-58.8789	0/1:64:24,40:24:860:40:1399:-106.939,0,-58.4559	0/0:111:110,1:110:3918:1:36:0,-29.8161,-349.213	0/0:54:54,0:54:1929:0:0:0,-16.2556,-173.885	0/1:35:22,13:22:788:13:464:-31.5615,0,-60.7087	0/1:92:38,53:38:1353:53:1883:-141.804,0,-94.3149	0/1:120:59,61:59:2105:61:2155:-158.089,0,-153.594	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:153:64,88:64:2304:88:3134:-236.159,0,-161.504	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:211:211,0:211:7546:0:0:0,-63.5173,-679.178	0/1:104:60,44:60:2148:44:1571:-110.374,0,-162.28	0/1:80:46,34:46:1648:34:1193:-83.5815,0,-124.526	0/0:88:86,2:86:3058:2:68:0,-20.0329,-268.989	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:89:39,50:39:1404:50:1766:-132.429,0,-99.8676	0/1:143:52,91:52:1842:91:3237:-248.502,0,-123.009	0/1:121:68,53:68:2440:53:1900:-134.852,0,-183.43	0/1:66:36,30:36:1284:30:1080:-77.6453,0,-95.9954	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.607	0/1:196:102,94:102:3668:94:3354:-242.988,0,-271.32	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2753	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/1:91:49,42:49:1760:42:1488:-106.818,0,-130.352	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:152:72,80:72:2554:80:2822:-208.461,0,-184.351	0/1:77:14,63:14:500:63:2243:-178.953,0,-22.1569	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:104:103,1:103:3689:1:36:0,-27.7088,-328.612
chr05	28599875	.	G	A	5989.3	PASS	AB=0.248281;ABP=1364.04;AC=39;AF=0.207447;AN=188;AO=643;CIGAR=1X;DP=6518;DPB=6518;DPRA=1.01028;EPP=1399.27;EPPR=12745.2;GTI=14;LEN=1;MEANALT=1.0625;MQM=60;MQMR=59.9595;NS=94;NUMALT=1;ODDS=0.158482;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22988;QR=210082;RO=5872;RPL=0;RPP=1399.27;RPPR=12745.2;RPR=643;RUN=1;SAF=643;SAP=1399.27;SAR=0;SRF=5872;SRP=12753.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:49:49,0:49:1739:0:0:0,-14.7505,-156.794	0/0:70:65,5:65:2332:5:176:0,-4.88708,-193.955	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.479	0/0:178:178,0:178:6361:0:0:0,-53.5833,-572.568	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:27:26,1:26:932:1:36:0,-4.52953,-80.6006	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/0:166:166,0:166:5938:0:0:0,-49.971,-534.527	0/1:53:45,8:45:1616:8:284:-9.94876,0,-129.775	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:64:44,20:44:1554:20:712:-45.1407,0,-120.884	0/1:49:28,21:28:999:21:752:-53.2558,0,-75.474	0/1:71:56,15:56:2008:15:540:-27.5634,0,-159.62	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:38:22,16:22:792:16:576:-40.7358,0,-60.1665	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:26:20,6:20:720:6:216:-11.9637,0,-57.302	0/0:85:79,5:79:2836:5:165:0,-10.4677,-240.299	0/1:100:80,20:80:2863:20:720:-35.0258,0,-227.804	0/1:56:49,7:49:1749:7:252:-6.17128,0,-140.835	0/1:49:44,5:44:1563:5:180:-1.8016,0,-126.21	0/0:100:91,9:91:3256:9:324:0,-0.597144,-263.755	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:294:293,1:293:10466:1:36:0,-84.9045,-938.259	0/0:212:212,0:212:7600:0:0:0,-63.8184,-683.72	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/1:151:117,34:117:4156:34:1216:-64.291,0,-328.768	0/0:93:91,2:91:3231:2:72:0,-21.1591,-284.177	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.627	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:131:79,52:79:2832:52:1864:-128.604,0,-215.684	0/0:220:220,0:220:7877:0:0:0,-66.2266,-708.684	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:81:68,13:68:2432:13:464:-17.7141,0,-194.752	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:68:65,3:65:2336:3:104:0,-10.7672,-200.796	0/1:44:28,16:28:1008:16:576:-38.9297,0,-77.791	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.084	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:52:45,7:45:1597:7:248:-7.01063,0,-128.365	0/0:140:140,0:140:5005:0:0:0,-42.1442,-450.596	0/1:82:66,16:66:2360:16:572:-27.129,0,-187.974	0/0:126:126,0:126:4489:0:0:0,-37.9298,-404.179	0/1:122:104,18:104:3728:18:644:-21.5649,0,-298.995	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:43:35,8:35:1256:8:288:-13.3231,0,-100.401	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:89:89,0:89:3175:0:0:0,-26.7917,-284.612	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:91:67,24:67:2392:24:860:-50.3281,0,-188.144	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.213	0/1:78:67,11:67:2400:11:396:-12.5024,0,-192.776	0/1:26:20,6:20:712:6:216:-11.9637,0,-56.5799	0/0:32:29,2:29:1040:2:72:0,-2.85503,-87.0777	0/0:137:137,0:137:4896:0:0:0,-41.2411,-440.793	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:41:36,5:36:1284:5:165:-2.83137,0,-103.521	0/1:62:38,24:38:1360:24:864:-59.4187,0,-104.037	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:49:44,5:44:1576:5:161:-0.0560872,0,-127.381	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:135:135,0:135:4806:0:0:0,-40.639,-432.696	0/1:114:75,39:75:2696:39:1392:-91.2616,0,-208.566	0/1:91:82,9:82:2940:9:320:-1.74863,0,-237.439	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.33	0/1:88:68,20:68:2436:20:697:-36.5595,0,-193.005	0/1:127:110,17:110:3948:17:612:-17.1826,0,-317.28	0/1:100:64,35:64:2291:35:1260:-83.5437,0,-176.289	0/1:40:33,7:33:1175:7:252:-10.9878,0,-94.0158	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:100:59,41:59:2120:41:1472:-102.673,0,-160.965	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.43	0/1:52:42,10:42:1504:10:356:-16.7277,0,-118.637	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:48:35,13:35:1230:13:468:-28.0102,0,-96.553	0/1:52:27,25:27:955:25:896:-65.3068,0,-70.6113	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.883	0/0:103:102,1:102:3648:1:36:0,-27.4078,-324.926
chr05	28708792	.	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chr05	28727307	.	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chr05	28820764	.	A	C	145128	PASS	AB=0.496011;ABP=3.61665;AC=132;AF=0.702128;AN=188;AO=5470;CIGAR=1X;DP=8069;DPB=8069;DPRA=0;EPP=11.9423;EPPR=647.831;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.6667;MQMR=59.7982;NS=94;NUMALT=1;ODDS=0.025554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194178;QR=92891;RO=2596;RPL=5408;RPP=11348.5;RPPR=5536.4;RPR=62;RUN=1;SAF=2750;SAP=3.36758;SAR=2720;SRF=1727;SRP=618.788;SRR=869;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,59:0:0:59:2083:-187.73,-17.7608,0	0/1:58:30,28:30:1080:28:960:-69.2466,0,-80.0453	1/1:36:0,36:0:0:36:1281:-115.583,-10.8371,0	1/1:101:1,100:1:36:100:3557:-316.687,-26.8058,0	0/1:47:28,19:28:1000:19:676:-47.0114,0,-76.167	0/1:36:21,15:21:756:15:525:-36.7412,0,-57.5301	1/1:77:0,77:0:0:77:2742:-247.014,-23.1793,0	1/1:63:0,63:0:0:63:2249:-202.663,-18.9649,0	0/1:82:46,36:46:1656:36:1288:-90.9041,0,-124.644	1/1:93:0,93:0:0:93:3306:-297.75,-27.9958,0	1/1:126:0,126:0:0:126:4477:-403.086,-37.9298,0	1/1:180:0,180:0:0:180:6372:-573.127,-54.1854,0	0/1:156:61,95:61:2180:95:3391:-258.443,0,-149.492	0/1:105:47,58:47:1664:58:2064:-154.414,0,-118.428	0/1:88:45,43:45:1616:43:1536:-112.04,0,-119.219	1/1:179:0,179:0:0:179:6315:-568.258,-53.8844,0	0/1:91:37,54:37:1309:54:1928:-146.392,0,-90.7021	1/1:137:0,137:0:0:137:4893:-440.472,-41.2411,0	0/1:180:84,96:84:2985:96:3356:-248.052,0,-214.503	0/1:73:40,33:40:1428:33:1184:-84.8908,0,-106.842	0/1:74:44,30:44:1572:30:1025:-70.1901,0,-119.49	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:50:29,21:29:1036:21:747:-52.5005,0,-78.5001	1/1:46:0,46:0:0:46:1629:-146.892,-13.8474,0	1/1:47:0,47:0:0:47:1660:-149.597,-14.1484,0	0/1:171:74,97:74:2644:97:3469:-260.942,0,-186.731	1/1:105:0,105:0:0:105:3688:-332.097,-31.6082,0	0/1:48:13,35:13:468:35:1223:-95.8846,0,-28.0102	0/1:109:60,49:60:2141:49:1745:-124.52,0,-160.037	0/1:48:6,42:6:216:42:1504:-121.201,0,-5.34107	1/1:72:1,71:1:36:71:2548:-225.972,-18.0759,0	0/0:107:103,3:103:3696:3:104:0,-22.5625,-323.116	0/1:10:1,9:1:36:9:324:-26.4909,0,-0.587975	1/1:10:0,10:0:0:10:349:-31.7351,-3.0103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:19:0,19:0:0:19:658:-59.5413,-5.71957,0	0/1:286:125,161:125:4475:161:5679:-424.641,0,-316.822	1/1:26:0,26:0:0:26:919:-82.8962,-7.82678,0	1/1:153:0,153:0:0:153:5411:-486.866,-46.0576,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:74:29,45:29:1044:45:1583:-120.457,0,-71.9986	1/1:57:0,57:0:0:57:2033:-183.236,-17.1587,0	0/1:100:52,48:52:1844:48:1716:-124.613,0,-136.135	0/1:139:61,78:61:2184:78:2769:-207.608,0,-154.978	1/1:137:0,137:0:0:137:4846:-436.268,-41.2411,0	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	0/1:28:15,13:15:540:13:453:-32.6626,0,-40.5077	1/1:42:0,42:0:0:42:1486:-134.02,-12.6433,0	0/1:39:16,23:16:564:23:800:-60.5756,0,-39.2427	1/1:105:0,105:0:0:105:3768:-339.153,-31.6082,0	0/1:80:35,45:35:1260:45:1603:-120.449,0,-89.6231	0/0:112:106,6:106:3808:6:216:0,-13.9272,-323.011	0/1:41:23,18:23:828:18:648:-46.3015,0,-62.5019	1/1:27:0,27:0:0:27:968:-87.4361,-8.12781,0	0/0:55:52,3:52:1841:3:108:0,-6.48148,-155.882	1/1:49:0,49:0:0:49:1741:-156.963,-14.7505,0	0/1:28:14,14:14:500:14:485:-35.5481,0,-36.9073	0/1:185:75,110:75:2677:110:3900:-295.472,0,-185.472	1/1:9:0,9:0:0:9:324:-29.5049,-2.70927,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:165:71,94:71:2530:94:3332:-250.421,0,-178.275	0/1:30:26,4:26:936:4:144:-4.28272,0,-75.5262	1/1:81:0,81:0:0:81:2882:-259.615,-24.3834,0	0/1:64:25,39:25:900:39:1383:-105.478,0,-62.0551	0/1:30:18,12:18:644:12:428:-29.7531,0,-49.2597	0/1:35:15,20:15:540:20:711:-53.7802,0,-38.3981	1/1:60:1,59:1:36:59:2120:-187.467,-14.4635,0	1/1:49:0,49:0:0:49:1764:-158.954,-14.7505,0	0/1:116:90,26:90:3216:26:932:-49.2702,0,-254.543	0/1:29:20,9:20:720:9:324:-20.776,0,-56.3989	0/1:105:47,58:47:1688:58:2080:-155.861,0,-120.598	1/1:9:0,9:0:0:9:324:-29.5012,-2.70927,0	0/1:47:26,21:26:936:21:735:-51.8936,0,-70.3983	1/1:39:0,39:0:0:39:1360:-122.673,-11.7402,0	1/1:75:0,75:0:0:75:2668:-240.341,-22.5773,0	0/1:72:34,38:34:1212:38:1333:-98.588,0,-87.7098	0/1:67:24,43:24:864:43:1531:-117.91,0,-57.9136	1/1:102:0,102:0:0:102:3626:-326.508,-30.7051,0	0/0:129:123,6:123:4397:6:216:0,-19.0424,-376.086	1/1:70:0,70:0:0:70:2470:-222.057,-21.0721,0	0/1:63:33,30:33:1184:30:1057:-76.2036,0,-87.9034	0/1:118:59,58:59:2124:58:2070:-150.981,0,-155.843	0/1:126:55,71:55:1972:71:2548:-191.631,0,-139.823	0/1:106:61,45:61:2192:45:1603:-112.647,0,-165.53	1/1:178:0,178:0:0:178:6349:-570.694,-53.5833,0	0/1:196:93,102:93:3319:102:3595:-264.325,0,-239.858	0/1:53:28,25:28:1008:25:887:-64.1853,0,-75.0784	1/1:160:0,160:0:0:160:5710:-513.936,-48.1648,0	0/1:100:40,60:40:1417:60:2121:-160.998,0,-97.7223	1/1:82:0,82:0:0:82:2921:-263.1,-24.6845,0	0/1:321:258,63:258:9255:63:2244:-105.587,0,-736.195	0/1:104:67,37:67:2393:37:1300:-85.9842,0,-184.318	1/1:59:0,59:0:0:59:2064:-186.013,-17.7608,0	1/1:263:0,263:0:0:263:9351:-841.494,-79.1709,0
chr05	28849034	.	A	G	45018.4	PASS	AB=0.491422;ABP=5.6182;AC=51;AF=0.271277;AN=188;AO=2013;CIGAR=1X;DP=6885;DPB=6885;DPRA=1.38138;EPP=4.33174;EPPR=4.6155;GTI=0;LEN=1;MEANALT=1.03571;MQM=59.93;MQMR=59.9411;NS=94;NUMALT=1;ODDS=0.0429439;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71301;QR=173018;RO=4870;RPL=3;RPP=4348.17;RPPR=10071.8;RPR=2010;RUN=1;SAF=1027;SAP=4.82364;SAR=986;SRF=2524;SRP=17.1378;SRR=2346;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:70:36,34:36:1277:34:1208:-87.9246,0,-94.159	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.408	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.645	0/1:32:14,18:14:504:18:644:-48.6576,0,-36.0651	0/1:28:12,16:12:424:16:576:-43.7461,0,-30.0676	0/0:83:83,0:83:2943:0:0:0,-24.9855,-265.103	0/0:57:57,0:57:2027:0:0:0,-17.1587,-182.512	0/1:47:29,18:29:1032:18:623:-42.2447,0,-79.0451	0/0:46:45,1:45:1616:1:36:0,-10.2491,-142.129	0/0:185:185,0:185:6527:0:0:0,-55.6905,-587.52	0/0:148:148,0:148:5245:0:0:0,-44.5524,-472.122	0/1:127:62,65:62:2212:65:2309:-169.835,0,-161.078	0/1:220:116,104:116:4159:104:3697:-266.706,0,-308.265	0/1:104:49,55:49:1743:55:1961:-145.458,0,-125.847	0/0:126:124,2:124:4429:2:72:0,-31.0931,-391.944	0/1:190:112,78:112:3958:78:2775:-192.796,0,-299.219	0/0:109:109,0:109:3883:0:0:0,-32.8123,-349.666	0/1:103:50,53:50:1761:53:1860:-136.671,0,-126.402	0/1:104:52,51:52:1841:51:1796:-130.553,0,-134.598	0/1:66:32,34:32:1148:34:1181:-86.7242,0,-83.7619	0/1:19:5,14:5:180:14:491:-38.8015,0,-10.8325	0/1:17:7,10:7:248:10:350:-26.7189,0,-17.5467	0/1:35:31,4:31:1104:4:127:-1.20838,0,-89.1346	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:125:76,49:76:2681:49:1756:-120.695,0,-203.907	0/0:115:115,0:115:4108:0:0:0,-34.6184,-369.415	0/1:57:33,24:33:1149:24:860:-60.5631,0,-86.5552	0/1:110:66,44:66:2349:44:1559:-107.487,0,-178.554	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.347	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:254:127,127:127:4508:127:4464:-325.467,0,-329.428	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:158:158,0:158:5592:0:0:0,-47.5627,-503.405	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:65:39,26:39:1353:26:932:-64.6319,0,-102.496	0/0:71:71,0:71:2508:0:0:0,-21.3731,-225.971	0/1:53:26,27:26:936:27:960:-70.7598,0,-68.6049	0/1:105:49,56:49:1740:56:1979:-146.775,0,-125.275	0/0:100:100,0:100:3557:0:0:0,-30.103,-320.338	0/0:21:21,0:21:733:0:0:0,-6.32163,-66.2897	0/1:58:30,28:30:1057:28:982:-71.2319,0,-77.9792	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/1:55:24,31:24:864:31:1085:-81.4012,0,-61.5259	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/1:59:25,34:25:896:34:1199:-90.4533,0,-63.1996	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:51:18,33:18:629:33:1184:-91.5158,0,-41.5812	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.11	0/1:10:2,8:2:72:8:280:-22.529,0,-3.82642	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:192:90,102:90:3232:102:3640:-270.008,0,-233.301	0/1:7:3,4:3:108:4:136:-10.4683,0,-7.96796	0/0:39:39,0:39:1368:0:0:0,-11.7402,-123.416	0/1:66:30,36:30:1057:36:1288:-96.3556,0,-75.571	0/1:37:16,21:16:576:21:730:-54.8813,0,-41.0369	0/1:23:10,13:10:356:13:464:-35.1738,0,-25.4576	0/0:54:53,1:53:1872:1:27:0,-13.5558,-166.059	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:82:38,44:38:1340:44:1567:-116.636,0,-96.2128	0/1:42:11,31:11:396:31:1093:-86.0344,0,-22.3944	0/1:179:88,91:88:3144:91:3229:-236.946,0,-229.302	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/1:33:23,10:23:828:10:360:-22.8103,0,-64.9101	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.613	0/1:59:28,31:28:981:31:1112:-82.6306,0,-70.8403	0/1:55:27,28:27:944:28:1004:-74.1192,0,-68.7147	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/1:52:22,30:22:773:30:1054:-79.5156,0,-54.2297	0/1:106:52,54:52:1864:54:1917:-140.896,0,-136.13	0/1:137:64,73:64:2261:73:2577:-190.938,0,-162.44	0/1:120:64,56:64:2288:56:1983:-142.62,0,-170.058	0/0:124:124,0:124:4420:0:0:0,-37.3277,-397.974	0/1:208:122,86:122:4325:86:3051:-211.834,0,-326.814	0/1:51:33,18:33:1184:18:648:-43.2809,0,-91.5158	0/0:103:103,0:103:3650:0:0:0,-31.0061,-328.703	0/1:116:56,60:56:1971:60:2112:-155.428,0,-142.745	0/0:142:141,1:141:4995:1:36:0,-39.148,-446.097	0/1:222:124,97:124:4413:97:3421:-240.9,0,-329.517	0/1:97:29,68:29:1027:68:2406:-187.596,0,-63.5423	0/0:79:79,0:79:2784:0:0:0,-23.7814,-250.756	0/0:169:166,3:166:5909:3:108:0,-40.8013,-521.849
chr05	28854019	.	G	T	106854	PASS	AB=0.468376;ABP=38.5816;AC=136;AF=0.723404;AN=188;AO=5198;CIGAR=1X;DP=7406;DPB=7406;DPRA=26.5341;EPP=11290.3;EPPR=4780.25;GTI=0;LEN=1;MEANALT=1.04301;MQM=59.9917;MQMR=60;NS=94;NUMALT=1;ODDS=2.11013;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185725;QR=78716;RO=2204;RPL=5198;RPP=11290.3;RPPR=4780.25;RPR=0;RUN=1;SAF=0;SAP=11290.3;SAR=5198;SRF=0;SRP=4788.94;SRR=2204;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	0/1:65:38,27:38:1360:27:953:-66.5164,0,-103.134	1/1:258:0,258:0:0:258:9249:-832.375,-77.6657,0	1/1:178:0,177:0:0:177:6329:-569.341,-53.2823,0	0/1:61:38,23:38:1352:23:828:-56.4813,0,-103.618	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.937	1/1:60:0,60:0:0:60:2140:-192.868,-18.0618,0	1/1:139:0,139:0:0:139:4965:-446.998,-41.8432,0	0/1:89:40,49:40:1436:49:1752:-131.172,0,-102.746	1/1:42:0,42:0:0:42:1489:-134.303,-12.6433,0	1/1:36:0,35:0:0:35:1256:-112.985,-10.5361,0	1/1:86:0,86:0:0:86:3088:-277.21,-25.8886,0	0/1:68:36,32:36:1292:32:1144:-82.7995,0,-96.1137	0/1:43:20,23:20:716:23:828:-61.8998,0,-51.8234	0/1:64:24,40:24:852:40:1432:-109.911,0,-57.7345	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:40:20,20:20:711:20:716:-52.7265,0,-52.2744	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:21:12,9:12:423:9:320:-22.8207,0,-32.0834	0/1:78:47,31:47:1676:31:1116:-77.2714,0,-127.647	0/1:108:58,50:58:2076:50:1796:-129.411,0,-154.599	0/1:152:94,58:94:3364:58:2080:-141.714,0,-257.22	0/1:120:71,49:71:2536:49:1745:-121.209,0,-192.368	1/1:51:1,50:1:36:50:1758:-154.901,-11.7543,0	1/1:100:0,100:0:0:100:3569:-321.417,-30.103,0	0/1:190:115,75:115:4124:75:2692:-185.328,0,-314.148	1/1:222:1,221:1:36:221:7902:-707.605,-63.2304,0	0/0:13:12,1:12:432:1:36:0,-0.315115,-35.6229	0/1:240:127,113:127:4544:113:4052:-292.62,0,-336.88	1/1:86:5,81:5:180:81:2885:-243.333,-9.33652,0	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:169:84,85:84:3012:85:3056:-224.394,0,-220.437	1/1:119:0,119:0:0:119:4241:-381.87,-35.8226,0	1/1:25:0,25:0:0:25:888:-80.2385,-7.52575,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:138:68,69:68:2432:69:2476:-181.492,0,-177.535	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:118:83,35:83:2976:35:1227:-75.21,0,-232.551	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	0/1:63:35,28:35:1256:28:1008:-72.0715,0,-94.3804	1/1:195:0,195:0:0:195:6974:-627.721,-58.7009,0	0/1:106:58,48:58:2076:48:1682:-119.753,0,-155.201	1/1:113:0,113:0:0:113:4064:-365.945,-34.0164,0	0/1:129:64,65:64:2280:65:2320:-170.228,0,-166.629	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/1:141:61,80:61:2175:80:2857:-214.921,0,-153.571	1/1:79:0,79:0:0:79:2821:-254.128,-23.7814,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:137:0,137:0:0:137:4870:-438.453,-41.2411,0	0/1:34:20,14:20:716:14:485:-33.742,0,-54.5327	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:77:0,77:0:0:77:2748:-247.561,-23.1793,0	0/1:98:55,43:55:1958:43:1544:-109.752,0,-146.993	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:101:1,100:1:36:100:3539:-315.118,-26.8058,0	0/1:128:63,65:63:2241:65:2321:-170.617,0,-163.42	0/1:72:31,41:31:1108:41:1468:-110.742,0,-78.3568	0/1:93:54,39:54:1902:39:1377:-96.2304,0,-143.461	1/1:107:0,107:0:0:107:3806:-342.736,-32.2102,0	1/1:105:4,101:4:144:101:3575:-308.642,-18.2945,0	0/1:30:15,15:15:536:15:536:-39.5439,0,-39.5439	0/1:63:33,30:33:1179:30:1072:-77.8276,0,-87.4523	0/1:36:18,18:18:640:18:640:-47.0922,0,-47.0922	1/1:11:0,10:0:0:10:360:-32.3845,-3.0103,0	0/1:176:79,97:79:2812:97:3472:-259.71,0,-200.339	1/1:50:0,50:0:0:50:1780:-160.482,-15.0515,0	1/1:145:0,145:0:0:145:5170:-465.44,-43.6494,0	0/1:169:111,58:111:3964:58:2065:-135.245,0,-306.078	0/1:181:75,106:75:2661:106:3796:-287.35,0,-185.249	1/1:111:0,111:0:0:111:3973:-357.759,-33.4143,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:90:0,90:0:0:90:3205:-288.672,-27.0927,0	0/1:100:50,50:50:1792:50:1747:-127.397,0,-131.459	0/1:196:98,98:98:3504:98:3519:-257.917,0,-256.569	0/1:38:19,19:19:680:19:684:-50.4512,0,-50.09	0/1:45:28,17:28:1004:17:612:-41.8671,0,-77.1295	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:84:36,48:36:1292:48:1704:-128.357,0,-91.2972	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	1/1:57:0,57:0:0:57:2042:-184.052,-17.1587,0	0/1:61:38,23:38:1360:23:824:-56.1205,0,-104.338	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:109:62,47:62:2199:47:1688:-119.395,0,-165.363	0/1:50:31,19:31:1087:19:680:-46.4777,0,-83.0869	1/1:16:1,15:1:36:15:532:-44.6148,-1.21821,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0
chr05	28879228	.	A	G	60689.9	PASS	AB=0.469221;ABP=23.1945;AC=138;AF=0.741935;AN=186;AO=2962;CIGAR=1X;DP=4271;DPB=4271;DPRA=0;EPP=6434.91;EPPR=2841.12;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.6519;MQMR=59.9878;NS=93;NUMALT=1;ODDS=0.787867;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106143;QR=46877;RO=1307;RPL=2962;RPP=6434.91;RPPR=2841.12;RPR=0;RUN=1;SAF=0;SAP=6434.91;SAR=2962;SRF=0;SRP=2841.12;SRR=1307;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1044:-94.2585,-8.72987,0	0/1:26:10,16:10:356:16:572:-43.9866,0,-24.5545	1/1:76:0,76:0:0:76:2720:-244.97,-22.8783,0	1/1:97:1,96:1:36:96:3448:-306.928,-25.6016,0	0/1:22:6,16:6:212:16:572:-45.1908,0,-12.8021	0/1:26:16,10:16:572:10:356:-24.5545,0,-43.9866	1/1:48:0,48:0:0:48:1724:-155.44,-14.4494,0	1/1:52:0,52:0:0:52:1868:-168.366,-15.6536,0	0/1:52:27,25:27:968:25:885:-64.2048,0,-71.7838	1/1:34:0,34:0:0:34:1220:-110.102,-10.235,0	1/1:58:0,58:0:0:58:2080:-187.468,-17.4597,0	1/1:65:0,65:0:0:65:2324:-208.421,-19.567,0	0/1:75:41,34:41:1472:34:1216:-87.1693,0,-110.199	0/1:70:36,34:36:1296:34:1224:-89.3541,0,-95.8718	0/1:39:15,24:15:536:24:860:-65.9793,0,-36.8346	1/1:46:0,46:0:0:46:1644:-148.188,-13.8474,0	0/1:26:12,14:12:428:14:496:-37.1475,0,-31.032	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:22:8,14:8:288:14:500:-38.7135,0,-19.6447	0/1:94:58,36:58:2080:36:1288:-87.9268,0,-159.173	0/1:59:35,24:35:1256:24:843:-58.0548,0,-95.5845	0/1:72:37,35:37:1332:35:1256:-91.6711,0,-98.5082	0/1:49:31,18:31:1116:18:648:-43.8944,0,-86.0012	1/1:39:2,37:2:72:37:1328:-112.981,-4.90345,0	1/1:43:0,43:0:0:43:1544:-139.234,-12.9443,0	0/1:75:43,32:43:1544:32:1152:-81.4029,0,-116.676	1/1:131:0,131:0:0:131:4716:-424.569,-39.4349,0	0/1:17:7,10:7:252:10:360:-27.6221,0,-17.9114	0/1:98:43,55:43:1544:55:1976:-148.609,0,-109.752	1/1:51:0,51:0:0:51:1828:-164.792,-15.3525,0	1/1:35:0,35:0:0:35:1260:-113.701,-10.5361,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:16:0,16:0:0:16:572:-51.8101,-4.81648,0	1/1:19:0,19:0:0:19:680:-61.5177,-5.71957,0	0/1:180:98,81:98:3520:81:2900:-206.99,0,-262.765	1/1:48:0,48:0:0:48:1724:-155.242,-14.4494,0	1/1:42:0,42:0:0:42:1508:-136.005,-12.6433,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:80:40,40:40:1432:40:1417:-103.737,0,-105.095	1/1:31:0,31:0:0:31:1112:-100.387,-9.33193,0	0/1:65:41,24:41:1476:24:852:-57.427,0,-113.569	0/1:29:11,18:11:396:18:648:-49.9173,0,-27.2529	1/1:22:0,22:0:0:22:792:-71.6033,-6.62266,0	1/1:44:0,44:0:0:44:1576:-142.122,-13.2453,0	0/1:40:14,26:14:500:26:928:-71.5918,0,-33.295	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:58:36,22:36:1292:22:788:-53.7846,0,-99.124	1/1:30:0,30:0:0:30:1080:-97.5109,-9.0309,0	0/1:83:44,39:44:1576:39:1400:-101.31,0,-117.145	.:.:.:.:.:.:.:.	0/1:48:22,26:22:788:26:928:-69.3806,0,-56.7872	1/1:25:0,25:0:0:25:900:-81.3174,-7.52575,0	0/1:14:2,12:2:72:12:417:-33.6376,0,-2.6223	1/1:22:0,22:0:0:22:784:-70.8793,-6.62266,0	0/1:36:20,16:20:720:16:576:-41.3309,0,-54.2917	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:40:0,40:0:0:40:1428:-128.813,-12.0412,0	0/1:76:51,25:51:1832:25:900:-58.4404,0,-142.283	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:56:0,56:0:0:56:2001:-180.343,-16.8577,0	0/1:68:47,21:47:1688:21:756:-47.8518,0,-131.737	0/1:44:17,27:17:608:27:964:-73.8267,0,-41.8067	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:55:0,55:0:0:55:1975:-178.017,-16.5567,0	0/1:35:22,13:22:788:13:468:-31.919,0,-60.7087	0/1:18:15,3:15:536:3:108:-4.65663,0,-43.1563	0/1:42:20,22:20:720:22:788:-58.6015,0,-52.4855	1/1:12:0,12:0:0:12:428:-38.7977,-3.61236,0	0/1:79:39,40:39:1400:40:1428:-104.965,0,-102.518	1/1:46:0,46:0:0:46:1648:-148.554,-13.8474,0	1/1:53:0,53:0:0:53:1896:-170.913,-15.9546,0	0/1:65:28,37:28:1004:37:1325:-99.9766,0,-71.1089	0/1:45:26,19:26:928:19:684:-48.3406,0,-70.2919	1/1:61:3,58:3:108:58:2069:-176.396,-8.28766,0	0/1:13:5,8:5:180:8:288:-22.339,0,-12.6387	1/1:32:0,32:0:0:32:1148:-103.629,-9.63296,0	0/1:31:15,16:15:540:16:564:-41.7547,0,-39.6046	0/1:103:63,40:63:2252:40:1435:-98.4393,0,-171.937	0/1:37:18,19:18:644:19:680:-50.1995,0,-47.1525	0/1:47:19,28:19:684:28:1008:-76.8856,0,-47.7419	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:83:37,46:37:1328:46:1640:-122.901,0,-94.8367	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	1/1:62:0,62:0:0:62:2232:-201.121,-18.6639,0	0/1:55:34,21:34:1224:21:756:-51.8106,0,-93.9104	1/1:43:0,43:0:0:43:1540:-138.249,-12.9443,0	0/1:92:51,41:51:1809:41:1468:-104.721,0,-135.393	0/1:29:20,9:20:720:9:324:-20.776,0,-56.3989	1/1:19:0,19:0:0:19:684:-61.881,-5.71957,0	1/1:64:0,63:0:0:63:2268:-204.02,-18.9649,0
chr05	28880323	.	T	A	15480.1	PASS	AB=0.397928;ABP=238.843;AC=50;AF=0.265957;AN=188;AO=1039;CIGAR=1X;DP=4974;DPB=4974;DPRA=0.95599;EPP=2259.17;EPPR=8545.58;GTI=4;LEN=1;MEANALT=1.01961;MQM=57.3888;MQMR=59.9743;NS=94;NUMALT=1;ODDS=0.164403;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37246;QR=140626;RO=3934;RPL=0;RPP=2259.17;RPPR=8545.58;RPR=1039;RUN=1;SAF=1039;SAP=2259.17;SAR=0;SRF=3934;SRP=8545.58;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:35:21,14:21:748:14:504:-35.1291,0,-57.1092	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/1:19:12,7:12:432:7:252:-17.2584,0,-33.5016	0/1:20:10,10:10:360:10:360:-26.4278,0,-26.7237	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.941	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.035	0/1:46:27,19:27:960:19:672:-46.8293,0,-72.8689	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:53:53,0:53:1899:0:0:0,-15.9546,-171.187	0/1:36:19,16:19:684:16:576:-41.2301,0,-50.9945	0/1:47:38,9:38:1364:9:324:-15.3467,0,-108.912	0/1:42:21,21:21:752:21:756:-55.6476,0,-55.363	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:24:19,5:19:680:5:180:-9.22986,0,-54.3044	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:20:13,7:13:468:7:252:-16.9067,0,-36.439	0/1:95:59,36:59:2077:36:1296:-87.566,0,-158.601	0/1:86:46,40:46:1656:40:1432:-102.052,0,-123.439	0/1:47:22,25:22:788:25:896:-66.7895,0,-57.0964	0/1:35:17,18:17:600:18:648:-48.0799,0,-43.7931	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.772	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:159:116,43:116:4144:43:1548:-91.7269,0,-325.281	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.518	0/1:21:9,12:9:324:12:428:-32.5268,0,-23.1842	0/1:103:64,39:64:2277:39:1381:-93.5807,0,-174.184	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.239	0/1:4:3,1:3:108:1:36:-2.39315,0,-8.87105	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:125:83,42:83:2976:42:1504:-97.9283,0,-230.444	0/0:139:139,0:139:4969:0:0:0,-41.8432,-447.358	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:77:32,45:32:1133:45:1601:-120.923,0,-79.0973	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:92:49,43:49:1741:43:1544:-111.268,0,-129.278	0/1:27:12,15:12:428:15:521:-39.0748,0,-30.731	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/1:79:46,33:46:1644:33:1188:-82.7734,0,-124.467	0/0:123:123,0:123:4370:0:0:0,-37.0267,-393.473	0/1:55:37,18:37:1324:18:648:-42.0593,0,-102.905	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.969	0/1:63:47,16:47:1676:16:572:-32.6787,0,-132.162	0/1:5:2,3:2:72:3:108:-8.56908,0,-5.33157	0/1:78:35,43:35:1256:43:1540:-115.056,0,-89.8649	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/1:8:6,2:6:208:2:68:-4.04602,0,-16.6508	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/1:48:34,14:34:1201:14:500:-30.8812,0,-93.9433	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.295	0/1:97:54,43:54:1921:43:1548:-110.172,0,-143.965	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/1:97:69,28:69:2484:28:995:-60.6226,0,-194.605	0/1:33:7,26:7:252:26:936:-74.1113,0,-13.095	0/1:38:20,18:20:720:18:648:-47.2127,0,-53.6896	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.777	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:17:11,6:11:396:6:216:-14.6675,0,-30.8652	0/1:42:28,14:28:1004:14:504:-33.0196,0,-78.0326	0/1:44:32,12:32:1137:12:432:-25.9759,0,-89.3916	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:111:69,42:69:2452:42:1508:-101.755,0,-187.519	0/0:38:38,0:38:1337:0:0:0,-11.4391,-120.628	0/0:138:138,0:138:4944:0:0:0,-41.5421,-445.109	0/1:57:32,25:32:1136:25:900:-63.7332,0,-85.3902	0/1:40:26,14:26:932:14:500:-33.2634,0,-72.1577	0/0:37:35,2:35:1252:2:72:0,-4.30632,-106.153	0/1:10:8,2:8:288:2:72:-3.82149,0,-23.2571	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:43:16,27:16:572:27:968:-74.3415,0,-38.8691	0/1:148:94,54:94:3355:54:1944:-130.431,0,-257.614	0/1:62:40,22:40:1440:22:792:-52.9372,0,-111.234	0/1:33:25,8:25:900:8:284:-15.9694,0,-71.387	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:74:42,32:42:1512:32:1152:-81.6772,0,-114.098	0/1:16:10,6:10:360:6:216:-14.5606,0,-27.9278	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:38:24,14:24:864:14:504:-34.2145,0,-66.6434	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:65:37,28:37:1324:28:1004:-70.6671,0,-99.8951	0/1:34:17,17:17:608:17:608:-44.8124,0,-44.817	0/0:55:55,0:55:1968:0:0:0,-16.5566,-176.119	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692
chr05	28882030	.	G	A	86820.1	PASS	AB=0.5;ABP=3.0103;AC=50;AF=0.265957;AN=188;AO=3878;CIGAR=1X;DP=14528;DPB=14528;DPRA=1.12127;EPP=8423.98;EPPR=23083.6;GTI=0;LEN=1;MEANALT=1.14286;MQM=52.0505;MQMR=51.2913;NS=94;NUMALT=1;ODDS=7.27663;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138321;QR=376946;RO=10633;RPL=1572;RPP=304.685;RPPR=6.62275;RPR=2306;RUN=1;SAF=1572;SAP=304.685;SAR=2306;SRF=5384;SRP=6.73221;SRR=5249;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:81:80,0:80:2839:0:0:0,-24.0824,-254.366	0/1:162:105,56:105:3722:56:2016:-130.402,0,-282.925	0/0:328:328,0:328:11567:0:0:0,-98.7378,-1033.62	0/0:354:353,0:353:12536:0:0:0,-106.264,-1122.61	0/1:89:34,55:34:1211:55:1957:-148.742,0,-80.6851	0/1:89:46,43:46:1637:43:1520:-109.58,0,-119.2	0/0:223:222,1:222:7909:1:36:0,-63.5563,-703.397	0/0:278:277,1:277:9772:1:36:0,-80.1076,-863.602	0/1:200:74,126:74:2621:126:4511:-343.229,0,-173.905	0/0:187:187,0:187:6678:0:0:0,-56.2926,-597.217	0/0:142:142,0:142:5052:0:0:0,-42.7463,-451.588	0/0:162:162,0:162:5675:0:0:0,-48.7669,-504.938	0/1:153:70,83:70:2479:83:2959:-218.187,0,-174.874	0/1:190:106,84:106:3745:84:2997:-210.976,0,-277.092	0/1:100:46,53:46:1648:53:1875:-138.323,0,-117.519	0/0:126:126,0:126:4441:0:0:0,-37.9298,-397.182	0/1:177:97,80:97:3406:80:2852:-201.071,0,-249.693	0/0:114:114,0:114:4057:0:0:0,-34.3174,-359.168	0/1:79:37,42:37:1332:42:1500:-110.8,0,-94.6239	0/1:228:123,105:123:4369:105:3759:-267.966,0,-322.17	0/1:184:99,85:99:3530:85:3048:-217.762,0,-259.576	0/1:93:27,66:27:953:66:2360:-183.861,0,-57.7597	0/1:98:52,46:52:1848:46:1648:-118.508,0,-136.622	0/0:115:108,7:108:3809:7:248:0,-12.0072,-316.427	0/0:86:86,0:86:3049:0:0:0,-25.8886,-272.316	0/1:379:166,213:166:5915:213:7612:-569.021,0,-416.941	0/0:406:406,0:406:14383:0:0:0,-122.218,-1282.74	0/1:54:32,22:32:1127:22:779:-54.0085,0,-84.4049	0/1:368:195,173:195:6890:173:6135:-439.539,0,-507.759	0/0:217:208,9:208:7426:9:320:0,-36.3541,-632.943	0/0:150:150,0:150:5331:0:0:0,-45.1545,-477.267	0/1:13:6,7:6:216:7:252:-19.0577,0,-15.6873	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.1071	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.4812	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.2914	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.1222	0/1:306:142,164:142:5035:164:5850:-433.493,0,-358.094	0/0:106:103,2:103:3649:2:72:0,-25.1418,-318.787	0/0:114:114,0:114:4012:0:0:0,-34.3174,-357.579	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.3749	0/1:262:149,112:149:5286:112:4020:-281.56,0,-390.724	0/0:64:64,0:64:2296:0:0:0,-19.2659,-204.925	0/1:259:119,140:119:4227:140:4984:-368.036,0,-299.712	0/1:179:51,127:51:1794:127:4501:-350.724,0,-106.478	0/0:134:133,0:133:4654:0:0:0,-40.037,-415.681	0/0:127:126,1:126:4437:1:36:0,-34.6478,-394.696	0/1:179:96,83:96:3404:83:2969:-210.83,0,-248.313	0/0:289:288,1:288:10215:1:36:0,-83.4084,-910.206	0/1:151:86,65:86:3037:65:2278:-159.094,0,-225.792	0/0:216:216,0:216:7701:0:0:0,-65.0225,-688.364	0/1:180:90,89:90:3204:89:3187:-232.258,0,-233.798	0/1:17:10,7:10:351:7:252:-17.8752,0,-26.2916	0/1:166:100,66:100:3579:66:2361:-160.75,0,-268.746	0/0:84:81,3:81:2896:3:108:0,-15.2422,-249.819	0/1:24:14,10:14:504:10:360:-25.3421,0,-37.3839	0/0:187:187,0:187:6615:0:0:0,-56.2926,-591.912	0/1:33:16,17:16:568:17:612:-44.155,0,-40.589	0/1:17:5,12:5:176:12:432:-34.0556,0,-11.0193	0/0:47:47,0:47:1671:0:0:0,-14.1484,-149.1	0/0:137:137,0:137:4818:0:0:0,-41.2411,-430.286	0/1:184:97,87:97:3440:87:3122:-224.891,0,-252.835	0/1:6:4,2:4:144:2:72:-5.0257,0,-11.4524	0/0:234:234,0:234:8345:0:0:0,-70.441,-748.177	0/1:271:143,128:143:5059:128:4567:-326.336,0,-371.124	0/1:172:91,81:91:3217:81:2895:-207.702,0,-235.008	0/1:116:61,55:61:2147:55:1967:-141.88,0,-157.832	0/0:172:170,0:170:6025:0:0:0,-51.1751,-539.77	0/0:214:211,2:211:7428:2:72:0,-57.5691,-657.366	0/1:109:54,55:54:1928:55:1972:-144.363,0,-139.404	0/1:72:41,31:41:1468:31:1112:-77.8359,0,-108.465	0/1:120:79,41:79:2816:41:1456:-95.0295,0,-216.041	0/0:50:50,0:50:1791:0:0:0,-15.0515,-160.572	0/1:187:100,87:100:3540:87:3108:-221.213,0,-259.86	0/0:149:149,0:149:5306:0:0:0,-44.8535,-472.703	0/0:333:332,0:332:11762:0:0:0,-99.942,-1046.72	0/1:212:99,113:99:3524:113:4045:-299.534,0,-251.359	0/1:161:78,83:78:2788:83:2928:-213.78,0,-201.388	0/0:210:209,1:209:7464:1:21:0,-61.117,-661.382	0/1:17:9,8:9:324:8:269:-19.3045,0,-24.0617	0/0:180:179,1:179:6306:1:36:0,-50.5962,-559.739	0/1:214:131,83:131:4640:83:2975:-201.48,0,-348.551	0/1:355:181,173:181:6406:173:6179:-447.05,0,-466.864	0/1:128:70,58:70:2468:58:2064:-146.796,0,-181.727	0/1:154:79,75:79:2811:75:2663:-192.918,0,-204.004	0/0:137:136,1:136:4814:1:36:0,-37.7866,-425.916	0/1:235:115,120:115:4074:120:4264:-311.753,0,-293.669	0/1:57:32,25:32:1148:25:900:-63.4542,0,-85.4585	0/0:128:128,0:128:4528:0:0:0,-38.5318,-403.49	0/1:102:47,55:47:1648:55:1950:-144.14,0,-116.214	0/0:124:124,0:124:4366:0:0:0,-37.3277,-388.75	0/1:194:95,99:95:3363:99:3560:-260.097,0,-240.047	0/1:193:38,154:38:1338:154:5470:-433.128,0,-62.0876	0/0:163:161,0:161:5680:0:0:0,-48.4658,-508.98	0/0:229:225,4:225:8007:4:140:0,-56.0026,-704.095
chr05	28924425	.	T	G	107253	PASS	AB=0.51158;ABP=13.6717;AC=50;AF=0.265957;AN=188;AO=4714;CIGAR=1X;DP=16966;DPB=16966;DPRA=1.38045;EPP=10230.6;EPPR=26558;GTI=0;LEN=1;MEANALT=1.03077;MQM=59.9752;MQMR=59.9903;NS=94;NUMALT=1;ODDS=5.88074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167472;QR=434207;RO=12249;RPL=2160;RPP=74.5187;RPPR=15.8383;RPR=2554;RUN=1;SAF=2161;SAP=73.7946;SAR=2553;SRF=5987;SRP=16.4169;SRR=6262;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.78	0/1:295:142,153:142:4997:153:5492:-405.601,0,-361.074	0/0:333:333,0:333:11696:0:0:0,-100.243,-1052.52	0/0:331:330,1:330:11756:1:36:0,-96.0426,-1053.75	0/1:122:49,73:49:1756:73:2567:-194.553,0,-121.598	0/1:107:41,66:41:1467:66:2347:-179.278,0,-100.115	0/0:197:197,0:197:6984:0:0:0,-59.3029,-628.399	0/0:348:347,1:347:12309:1:36:0,-101.16,-1104.04	0/1:223:110,113:110:3898:113:4023:-295.021,0,-283.884	0/0:148:148,0:148:5252:0:0:0,-44.5524,-472.815	0/0:173:173,0:173:6130:0:0:0,-52.0782,-551.716	0/0:189:189,0:189:6723:0:0:0,-56.8947,-605.148	0/1:152:67,85:67:2384:85:3023:-226.545,0,-169.062	0/1:191:92,99:92:3277:99:3497:-257.44,0,-237.653	0/1:141:82,59:82:2922:59:2098:-146.643,0,-220.769	0/0:145:145,0:145:5143:0:0:0,-43.6493,-463.011	0/1:148:79,69:79:2792:69:2446:-175.842,0,-206.968	0/0:129:129,0:129:4573:0:0:0,-38.8329,-411.736	0/1:114:51,63:51:1823:63:2247:-168.175,0,-130.033	0/1:343:183,160:183:6471:160:5720:-411.664,0,-479.225	0/1:292:146,146:146:5229:146:5167:-377.271,0,-382.845	0/1:83:20,63:20:716:63:2260:-177.226,0,-39.7822	0/1:193:102,91:102:3595:91:3268:-236.241,0,-265.657	0/0:162:155,7:155:5479:7:252:0,-25.7379,-470.209	0/0:123:123,0:123:4351:0:0:0,-37.0267,-391.765	0/1:464:229,235:229:8135:235:8295:-606.888,0,-592.488	0/0:379:379,0:379:13429:0:0:0,-114.09,-1208.41	0/1:80:39,41:39:1392:41:1455:-107.163,0,-101.497	0/1:382:187,195:187:6587:195:6978:-513.09,0,-477.918	0/0:159:156,3:156:5482:3:108:0,-37.7886,-483.436	0/0:241:240,1:240:8481:1:36:0,-68.95,-759.697	0/1:10:7,3:7:233:3:108:-7.06487,0,-18.284	0/0:36:36,0:36:1254:0:0:0,-10.8371,-113.158	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:412:196,216:196:6948:216:7721:-570.897,0,-501.363	0/0:155:154,1:154:5501:1:36:0,-43.0614,-491.615	0/0:199:199,0:199:7074:0:0:0,-59.905,-636.721	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:323:158,165:158:5622:165:5860:-430.278,0,-408.869	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:300:145,154:145:5134:154:5448:-400.081,0,-371.834	0/1:186:90,96:90:3180:96:3407:-250.852,0,-230.43	0/0:148:148,0:148:5280:0:0:0,-44.5524,-475.338	0/0:136:135,1:135:4804:1:36:0,-37.3418,-428.918	0/1:189:98,91:98:3493:91:3267:-237.354,0,-257.686	0/0:259:258,1:258:9187:1:36:0,-74.3685,-823.205	0/1:146:79,67:79:2787:67:2345:-167.357,0,-207.117	0/0:249:248,1:248:8735:1:36:0,-71.3582,-782.544	0/1:194:93,101:93:3279:101:3612:-266.886,0,-236.928	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:303:147,156:147:5237:156:5519:-405.626,0,-380.254	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.868	0/1:31:11,20:11:381:20:709:-54.8028,0,-25.2887	0/0:271:269,2:269:9562:2:72:0,-74.7424,-853.7	0/1:95:42,53:42:1485:53:1866:-139.618,0,-105.345	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/0:177:177,0:177:6299:0:0:0,-53.2823,-567.002	0/1:223:107,116:107:3775:116:4109:-302.865,0,-272.819	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:232:232,0:232:8174:0:0:0,-69.839,-735.679	0/1:235:123,112:123:4365:112:3973:-287.019,0,-322.282	0/1:159:90,69:90:3186:69:2457:-173.52,0,-239.099	0/1:141:71,70:71:2532:70:2488:-181.727,0,-185.687	0/0:269:266,3:266:9405:3:108:0,-70.9019,-836.342	0/0:273:272,1:272:9552:1:36:0,-78.5829,-856.034	0/1:100:46,54:46:1617:54:1928:-143.694,0,-115.714	0/1:121:53,68:53:1904:68:2429:-182.439,0,-135.213	0/1:216:125,91:125:4426:91:3229:-225.81,0,-333.491	0/0:32:32,0:32:1106:0:0:0,-9.63296,-99.8425	0/1:133:69,64:69:2434:64:2282:-165.603,0,-179.276	0/0:126:126,0:126:4470:0:0:0,-37.9298,-402.47	0/0:323:323,0:323:11453:0:0:0,-97.2327,-1030.65	0/1:295:142,153:142:5046:153:5448:-401.646,0,-365.482	0/1:164:69,95:69:2448:95:3376:-254.687,0,-171.204	0/0:261:255,6:255:8980:6:212:0,-59.144,-788.759	0/1:25:7,18:7:244:18:631:-49.5888,0,-14.7737	0/0:296:295,1:295:10503:1:36:0,-85.5066,-941.588	0/1:174:80,94:80:2857:94:3294:-244.3,0,-204.987	0/1:402:192,210:192:6828:210:7455:-549.98,0,-493.577	0/1:188:85,103:85:2995:103:3652:-272.29,0,-213.188	0/1:131:72,59:72:2523:59:2097:-149.562,0,-187.884	0/0:201:200,0:200:7102:0:0:0,-60.206,-638.883	0/1:291:146,145:146:5138:145:5093:-370.915,0,-374.966	0/1:84:44,40:44:1564:40:1411:-101.998,0,-115.765	0/0:162:162,0:162:5767:0:0:0,-48.7669,-519.149	0/1:154:82,72:82:2948:72:2554:-183.752,0,-219.194	0/0:142:142,0:142:5024:0:0:0,-42.7463,-452.298	0/1:233:124,109:124:4394:109:3862:-277.638,0,-325.491	0/1:147:48,99:48:1679:99:3523:-273.029,0,-107.139	0/0:191:191,0:191:6812:0:0:0,-57.4967,-613.142	0/0:258:256,1:256:9075:1:36:0,-74.1263,-813.133
chr05	28929856	.	ATG	TTT,TTG	366441	PASS	AB=0.528829,0.467623;ABP=51.8395,64.5987;AC=136,50;AF=0.731183,0.268817;AN=186;AO=10509,3194;CIGAR=1X1M1X,1X2M;DP=13752;DPB=13757.7;DPRA=0,1.02509;EPP=22823,6938.69;EPPR=13.8677;GTI=2;LEN=3,1;MEANALT=2.07527,2.41667;MQM=59.9506,59.964;MQMR=58.8;NS=93;NUMALT=2;ODDS=1.40873;PAIRED=0,0;PAIREDR=0;PAO=8.5,8.5;PQA=203.5,203.5;PQR=0;PRO=0;QA=366555,113385;QR=131;RO=5;RPL=6227,1876;RPP=784.696,214.694;RPPR=13.8677;RPR=4282,1318;RUN=1,1;SAF=6227,1876;SAP=784.696,214.694;SAR=4282,1318;SRF=5;SRP=13.8677;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40,0:0:0:40,0:1384,0:-124.855,-12.0412,0,-124.855,-12.0412,-124.855	1/2:102:0,61,41:0:0:61,41:2137,1468:-293.953,-120.074,-101.711,-174.234,0,-161.892	1/1:208:0,208,0:0:0:208,0:7188,0:-646.989,-62.6142,0,-646.989,-62.6142,-646.989	1/1:389:0,386,1:0:0:386,1:13459,36:-1210.18,-116.198,0,-1207.24,-113.247,-1206.94	1/2:20:0,10,10:0:0:10,10:350,348:-57.1219,-28.6448,-25.6345,-28.8259,0,-25.8156	1/2:17:0,8,9:0:0:8,9:284,324:-49.9347,-26.7966,-24.3883,-23.4953,0,-20.7861	1/1:109:0,109,0:0:0:109,0:3824,0:-344.362,-32.8123,0,-344.362,-32.8123,-344.362	1/1:145:0,143,2:0:0:143,2:4974,72:-447.443,-43.0473,0,-441.568,-36.8126,-440.966	1/2:90:0,49,41:0:0:49,41:1691,1436:-254.564,-117.191,-102.44,-137.721,0,-125.379	1/1:227:0,226,0:0:0:226,0:7912,0:-711.757,-68.0328,0,-711.757,-68.0328,-711.757	1/1:87:0,87,0:0:0:87,0:3038,0:-273.641,-26.1896,0,-273.641,-26.1896,-273.641	1/1:170:0,169,0:0:0:169,0:5860,0:-527.167,-50.8741,0,-527.167,-50.8741,-527.167	1/2:167:0,85,82:0:0:85,82:2930,2919:-476.257,-238.261,-212.673,-238.347,0,-213.662	1/2:103:0,41,60:0:0:41,60:1432,2120:-289.127,-172.645,-160.303,-116.474,0,-98.4118	1/2:148:0,79,69:0:0:79,69:2745,2434:-421.69,-198.527,-174.746,-223.513,0,-202.742	1/1:105:0,105,0:0:0:105,0:3593,0:-323.581,-31.6082,0,-323.581,-31.6082,-323.581	1/2:67:0,40,26:0:0:40,26:1349,918:-184.208,-74.8932,-62.852,-109.446,0,-101.619	1/1:72:1,71,0:1:27:71,0:2503,0:-222.824,-18.9744,0,-223.125,-21.3731,-225.253	1/2:41:0,25,16:0:0:25,16:872,563:-117.103,-46.1827,-38.6569,-71.2703,0,-66.4539	1/2:299:0,138,161:0:0:138,161:4782,5720:-855.102,-466.453,-424.91,-389,0,-340.534	1/2:357:0,185,171:0:0:185,171:6468,6094:-1022.83,-496.719,-441.029,-526.101,0,-474.624	1/2:43:0,16,27:0:0:16,27:574,963:-125.678,-78.8581,-74.0416,-47.1778,0,-39.05	1/2:149:0,78,70:0:0:78,70:2733,2482:-424.597,-202.218,-178.738,-222.391,0,-201.319	1/2:69:0,61,8:0:0:61,8:2108,288:-195.126,-23.8592,-5.49634,-171.625,0,-169.216	1/1:40:0,40,0:0:0:40,0:1377,0:-124.223,-12.0412,0,-124.223,-12.0412,-124.223	1/2:347:0,175,167:0:0:175,167:6097,5924:-978.389,-482.579,-429.899,-495.835,0,-445.563	1/1:253:0,253,0:0:0:253,0:8764,0:-788.78,-76.1606,0,-788.78,-76.1606,-788.78	1/2:73:0,45,28:0:0:45,28:1612,1000:-213.353,-81.8865,-68.3402,-131.824,0,-123.395	1/2:371:0,192,179:0:0:192,179:6672,6393:-1064,-521.573,-463.775,-542.776,0,-488.891	1/1:176:0,168,8:0:0:168,8:5772,288:-519.245,-50.573,0,-495.745,-26.7139,-493.337	1/1:156:0,156,0:0:0:156,0:5415,0:-487.488,-46.9607,0,-487.488,-46.9607,-487.488	1/2:6:0,3,3:0:0:3,3:106,108:-17.8016,-9.17208,-8.26899,-8.98601,0,-8.08292	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/1:10:0,10,0:0:0:10,0:343,0:-31.2005,-3.0103,0,-31.2005,-3.0103,-31.2005	1/1:13:0,13,0:0:0:13,0:451,0:-40.8642,-3.91339,0,-40.8642,-3.91339,-40.8642	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/2:361:0,197,164:0:0:197,164:6791,5789:-1023.32,-471.691,-412.388,-551.918,0,-502.549	1/1:100:0,98,2:0:0:98,2:3426,68:-308.188,-29.5009,0,-302.673,-23.6754,-302.071	1/1:77:0,74,0:0:0:74,0:2566,0:-230.881,-22.2762,0,-230.881,-22.2762,-230.881	.:.:.:.:.:.:.:.	1/2:280:2,161,115:2:48:161,115:5628,4068:-784.881,-327.66,-282.909,-454.144,0,-423.242	1/1:52:0,52,0:0:0:52,0:1831,0:-165.069,-15.6536,0,-165.069,-15.6536,-165.069	1/2:127:0,63,64:0:0:63,64:2244,2256:-366.927,-184.031,-165.066,-183.25,0,-163.984	1/2:141:0,83,56:0:0:83,56:2890,1992:-397.381,-162.38,-137.395,-235.037,0,-218.179	1/1:134:0,134,0:0:0:134,0:4693,0:-422.477,-40.338,0,-422.477,-40.338,-422.477	1/1:99:0,98,0:0:0:98,0:3407,0:-306.566,-29.5009,0,-306.566,-29.5009,-306.566	1/2:82:0,53,29:0:0:53,29:1872,1023:-236.066,-83.651,-67.6964,-152.768,0,-144.038	1/1:221:0,216,3:0:0:216,3:7497,108:-674.444,-65.0225,0,-665.632,-56.1833,-664.729	1/2:104:0,66,38:0:0:66,38:2317,1355:-299.376,-110.811,-90.9426,-188.92,0,-177.481	1/1:280:0,279,0:0:0:279,0:9826,0:-883.934,-83.9874,0,-883.934,-83.9874,-883.934	1/2:110:1,61,47:1:36:61,47:2140,1660:-306.163,-132.311,-116.886,-171.279,0,-160.068	1/2:18:0,9,9:0:0:9,9:318,315:-51.8781,-25.978,-23.2687,-26.2517,0,-23.5424	1/2:172:0,89,83:0:0:89,83:3108,2968:-495.17,-242.368,-215.576,-253.155,0,-228.17	1/1:108:0,108,0:0:0:108,0:3739,0:-336.655,-32.5112,0,-336.655,-32.5112,-336.655	1/2:9:0,2,7:0:0:2,7:63,248:-25.6145,-20.557,-19.9549,-5.38109,0,-3.27388	1/1:281:0,281,0:0:0:281,0:9796,0:-881.607,-84.5894,0,-881.607,-84.5894,-881.607	1/2:25:0,11,14:0:0:1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chr05	28929861	.	C	T	72294.2	PASS	AB=0.480703;ABP=24.7156;AC=50;AF=0.268817;AN=186;AO=3260;CIGAR=1X;DP=13526;DPB=13526;DPRA=1.32439;EPP=7082.01;EPPR=22247.6;GTI=1;LEN=1;MEANALT=1.12903;MQM=59.954;MQMR=59.9564;NS=93;NUMALT=1;ODDS=1.71764;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116140;QR=359973;RO=10252;RPL=1927;RPP=238.033;RPPR=693.856;RPR=1333;RUN=1;SAF=1927;SAP=238.033;SAR=1333;SRF=6031;SRP=696.92;SRR=4221;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:40,0:40:1399:0:0:0,-12.0412,-125.844	0/1:100:61,39:61:2106:39:1391:-95.3852,0,-159.702	0/0:203:202,0:202:7093:0:0:0,-60.8081,-638.22	0/0:388:387,1:387:13605:1:36:0,-113.201,-1220.66	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	0/0:107:107,0:107:3714:0:0:0,-32.2102,-334.463	0/0:141:138,2:138:4899:2:72:0,-35.6607,-434.211	0/1:92:49,43:49:1710:43:1525:-109.759,0,-126.487	0/0:222:222,0:222:7856:0:0:0,-66.8287,-707.072	0/0:85:85,0:85:2932:0:0:0,-25.5875,-264.108	0/0:160:160,0:160:5525:0:0:0,-48.1648,-497.385	0/1:170:84,86:84:2929:86:3072:-225.531,0,-212.665	0/1:102:42,60:42:1457:60:2128:-161.081,0,-100.717	0/1:146:77,68:77:2730:68:2440:-175.917,0,-202.023	0/0:101:101,0:101:3532:0:0:0,-30.404,-318.089	0/1:68:41,27:41:1455:27:968:-66.9673,0,-110.775	0/0:70:70,0:70:2487:0:0:0,-21.0721,-224.083	0/1:43:25,18:25:865:18:635:-44.5327,0,-65.2189	0/1:297:132,165:132:4662:165:5826:-435.048,0,-330.339	0/1:360:186,174:186:6538:174:6192:-449.005,0,-480.065	0/1:45:17,28:17:599:28:991:-75.9572,0,-40.6917	0/1:149:78,71:78:2755:71:2543:-184.267,0,-203.338	0/1:66:59,7:59:2066:7:252:-3.16098,0,-165.486	0/0:36:36,0:36:1221:0:0:0,-10.8371,-110.185	0/1:340:168,171:168:5923:171:6112:-447.711,0,-430.775	0/0:246:245,0:245:8619:0:0:0,-73.7523,-775.404	0/1:73:45,28:45:1612:28:1004:-68.7007,0,-123.395	0/1:367:182,185:182:6377:185:6607:-484.231,0,-463.553	0/0:170:161,9:161:5673:9:324:0,-21.6692,-481.185	0/0:151:151,0:151:5276:0:0:0,-45.4555,-474.978	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:360:190,169:190:6635:169:6000:-431.797,0,-488.937	0/0:96:94,2:94:3259:2:68:0,-22.4412,-287.075	0/0:76:76,0:76:2689:0:0:0,-22.8783,-242.254	.:.:.:.:.:.:.:.	0/1:274:155,118:155:5393:118:4201:-295.731,0,-402.956	0/0:49:49,0:49:1707:0:0:0,-14.7505,-153.912	0/1:122:61,61:61:2145:61:2170:-158.84,0,-156.583	0/1:139:81,58:81:2845:58:2087:-146.257,0,-214.444	0/0:132:132,0:132:4562:0:0:0,-39.736,-410.755	0/0:96:95,0:95:3332:0:0:0,-28.5978,-299.817	0/1:80:49,31:49:1717:31:1093:-74.5944,0,-130.684	0/0:212:209,3:209:7325:3:108:0,-53.7432,-649.229	0/1:99:61,38:61:2140:38:1368:-93.6189,0,-163.06	0/0:274:273,1:273:9740:1:36:0,-78.8839,-872.938	0/1:111:64,47:64:2245:47:1684:-118.432,0,-168.893	0/1:17:8,9:8:288:9:316:-23.6613,0,-21.1499	0/1:168:84,84:84:2944:84:2989:-218.668,0,-214.62	0/0:101:101,0:101:3549:0:0:0,-30.404,-319.62	0/1:11:2,9:2:72:9:315:-25.3759,0,-3.52539	0/0:272:272,0:272:9471:0:0:0,-81.8802,-852.367	0/1:25:11,14:11:388:14:504:-38.1723,0,-27.7316	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7956	0/0:77:75,1:75:2659:1:36:0,-19.5749,-236.021	0/1:168:91,77:91:3250:77:2756:-197.709,0,-242.147	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:696:694,1:694:24412:1:31:0,-206.446,-2193.3	0/1:198:100,98:100:3538:98:3516:-257.041,0,-259.027	0/1:123:64,59:64:2244:59:2103:-152.513,0,-165.195	0/1:113:60,53:60:2079:53:1889:-136.27,0,-153.359	0/0:200:196,4:196:6928:4:140:0,-47.2614,-610.646	0/0:214:213,1:213:7484:1:36:0,-60.8221,-670.003	0/1:60:36,24:36:1272:24:835:-57.4047,0,-96.7211	0/1:79:36,43:36:1265:43:1531:-114.301,0,-90.3692	0/1:73:36,37:36:1264:37:1319:-97.036,0,-92.0846	0/0:56:56,0:56:1969:0:0:0,-16.8577,-177.483	0/1:115:57,57:57:1968:57:2031:-148.434,0,-142.755	0/0:203:203,0:203:7131:0:0:0,-61.1091,-641.847	0/0:203:203,0:203:7149:0:0:0,-61.1091,-643.477	0/1:485:239,246:239:8428:246:8766:-642.917,0,-612.262	0/1:31:23,8:23:786:8:288:-16.9355,0,-61.7198	0/0:406:398,8:398:13987:8:288:0,-95.9508,-1232.35	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:218:218,0:218:7559:0:0:0,-65.6245,-680.365	0/1:134:74,60:74:2606:60:2160:-154.329,0,-194.448	0/1:285:155,130:155:5499:130:4611:-329.36,0,-409.246	0/1:125:64,61:64:2248:61:2179:-158.746,0,-164.953	0/1:130:63,67:63:2232:67:2378:-175.143,0,-162.011	0/0:119:119,0:119:4171:0:0:0,-35.8226,-375.578	0/1:231:121,110:121:4259:110:3894:-281.116,0,-313.944	0/1:45:30,15:30:1052:15:540:-35.3902,0,-81.4441	0/0:131:129,0:129:4506:0:0:0,-38.8329,-405.377	0/1:130:66,64:66:2292:64:2296:-167.767,0,-167.406	0/0:52:52,0:52:1808:0:0:0,-15.6536,-162.999	0/1:140:76,64:76:2690:64:2278:-163.123,0,-200.201	0/1:162:49,113:49:1731:113:4002:-311.602,0,-107.307	0/0:510:510,0:510:17897:0:0:0,-153.525,-1610.33	0/0:234:233,1:233:8157:1:36:0,-66.8427,-730.003
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chr05	29014872	.	G	A	16806.5	PASS	AB=0.369991;ABP=805.339;AC=82;AF=0.44086;AN=186;AO=2063;CIGAR=1X;DP=5959;DPB=5959;DPRA=8.15034;EPP=4482.76;EPPR=4879.77;GTI=21;LEN=1;MEANALT=1;MQM=29.7397;MQMR=40.2723;NS=93;NUMALT=1;ODDS=0.894979;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73719;QR=138833;RO=3896;RPL=0;RPP=4482.76;RPPR=8463.07;RPR=2063;RUN=1;SAF=2063;SAP=4482.76;SAR=0;SRF=3427;SRP=4879.77;SRR=469;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:6,6:6:207:6:216:-12.1199,0,-13.6563	0/1:73:16,57:16:576:57:2048:-126.436,0,-22.3425	0/1:45:24,21:24:856:21:756:-40.6863,0,-54.0037	0/1:108:67,41:67:2382:41:1464:-71.8448,0,-139.402	0/1:73:39,34:39:1404:34:1216:-66.7844,0,-94.8014	0/1:36:26,10:26:936:10:356:-15.2421,0,-72.2654	0/1:57:48,9:48:1724:9:305:-5.17071,0,-113.282	0/1:76:24,52:24:860:52:1860:-111.352,0,-45.0325	0/1:47:27,20:27:968:20:701:-37.7146,0,-57.49	0/1:39:15,24:15:540:24:856:-48.9001,0,-27.8795	0/0:47:44,3:44:1558:3:108:0,-6.24938,-123.477	0/1:86:64,22:64:2234:22:784:-31.2513,0,-170.979	0/1:58:47,11:47:1688:11:396:-11.2863,0,-121.929	0/1:78:65,13:65:2306:13:464:-10.1016,0,-179.093	0/0:75:66,9:66:2355:9:320:0,-0.11429,-160.511	0/1:62:48,14:48:1711:14:504:-18.2012,0,-132.682	0/1:71:55,16:55:1963:16:576:-21.0884,0,-149.446	0/1:59:48,11:48:1720:11:396:-11.2669,0,-132.524	0/1:24:16,8:16:576:8:288:-14.5714,0,-43.7603	0/0:120:108,12:108:3863:12:417:0,-7.65086,-239.213	0/1:91:75,16:75:2692:16:576:-15.3263,0,-196.464	0/1:32:10,22:10:360:22:788:-46.1065,0,-16.8205	0/1:40:24,16:24:864:16:576:-28.9385,0,-54.8718	0/1:106:67,39:67:2400:39:1385:-69.3936,0,-175.092	0/1:21:18,3:18:644:3:108:-1.80611,0,-43.1514	0/1:179:111,68:111:3984:68:2444:-118.074,0,-220.902	0/1:98:70,28:70:2495:28:1004:-43.5084,0,-153.423	0/1:53:41,12:41:1464:12:432:-14.4984,0,-110.965	0/1:140:99,41:99:3518:41:1453:-60.7765,0,-207.301	0/1:85:38,47:38:1368:47:1684:-97.0528,0,-77.1162	0/1:79:54,25:54:1911:25:896:-39.8871,0,-111.833	0/1:3:2,1:2:72:1:36:-1.99967,0,-4.61216	0/0:6:6,0:6:212:0:0:0,-1.80618,-16.4973	0/1:4:1,3:1:36:3:108:-6.92362,0,-2.39415	0/0:6:6,0:6:201:0:0:0,-1.80618,-17.6781	0/0:3:3,0:3:104:0:0:0,-0.90309,-8.09316	0/1:190:140,50:140:4965:50:1792:-70.6443,0,-359.275	0/1:126:32,94:32:1152:94:3342:-205.633,0,-48.5431	0/1:72:53,19:53:1892:19:680:-27.9192,0,-141.223	.:.:.:.:.:.:.:.	0/1:64:46,18:46:1648:18:644:-27.945,0,-106.303	0/1:23:19,4:19:665:4:144:-3.81654,0,-44.6914	0/1:65:26,39:26:913:39:1404:-82.2998,0,-52.583	0/1:74:60,14:60:2120:14:500:-13.4632,0,-158.563	0/1:84:62,22:62:2209:22:792:-30.9269,0,-146.227	0/1:31:27,4:27:972:4:144:-1.10607,0,-60.9072	0/1:71:28,43:28:1008:43:1540:-92.3608,0,-64.6904	0/1:113:83,30:83:2956:30:1057:-41.2006,0,-182.305	0/1:57:47,10:47:1663:10:360:-8.34788,0,-101.74	0/1:72:41,31:41:1456:31:1108:-57.2141,0,-86.666	0/1:56:19,37:19:672:37:1324:-77.1141,0,-34.2148	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.6533	0/1:59:36,23:36:1288:23:828:-42.9874,0,-79.4851	0/1:10:8,2:8:279:2:68:-2.25729,0,-18.8913	1/1:4:0,4:0:0:4:144:-10.7402,-1.20412,0	0/1:71:42,29:42:1496:29:1040:-54.9565,0,-105.565	0/1:19:13,6:13:460:6:216:-9.87125,0,-27.9683	0/1:14:7,7:7:252:7:252:-13.8405,0,-13.052	0/1:16:13,3:13:464:3:108:-3.08255,0,-26.6393	0/1:44:21,23:21:752:23:809:-46.2559,0,-45.3924	0/1:157:132,25:132:4709:25:896:-16.2508,0,-311.02	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.82108	0/1:139:52,87:52:1845:87:3098:-179.418,0,-90.0984	0/1:150:112,38:112:3981:38:1349:-52.5046,0,-237.423	0/1:42:27,15:27:948:15:536:-27.3429,0,-62.4868	0/1:58:14,44:14:504:44:1572:-94.801,0,-16.896	0/1:109:69,40:69:2480:40:1432:-67.2362,0,-139.617	0/0:37:34,3:34:1220:3:108:0,-3.23908,-80.3712	0/0:31:31,0:31:1084:0:0:0,-9.33193,-95.8629	0/1:31:24,7:24:852:7:252:-9.24576,0,-55.6319	0/1:139:99,40:99:3497:40:1440:-59.1069,0,-241.944	0/1:8:6,2:6:212:2:72:-2.95181,0,-13.0185	0/1:31:15,16:15:540:16:572:-32.0018,0,-31.2063	0/1:39:29,10:29:1036:10:356:-14.7713,0,-76.2444	0/1:82:72,10:72:2564:10:345:-0.953671,0,-175.277	0/1:58:15,43:15:532:43:1536:-93.1947,0,-20.7426	0/1:61:16,45:16:572:45:1612:-99.465,0,-25.7848	0/1:59:42,17:42:1512:17:604:-27.0946,0,-95.0071	0/1:6:2,4:2:72:4:144:-8.93405,0,-3.85725	0/1:88:28,60:28:1008:60:2137:-129.86,0,-47.3651	0/1:52:32,20:32:1148:20:705:-36.1137,0,-84.1356	0/1:113:40,73:40:1436:73:2620:-152.804,0,-72.7158	0/1:147:113,34:113:4020:34:1224:-42.3012,0,-279.028	0/1:39:25,14:25:892:14:504:-24.7844,0,-66.123	0/1:72:60,12:60:2137:12:428:-8.98721,0,-134.551	0/1:103:59,44:59:2097:44:1556:-79.581,0,-143.304	0/1:76:66,10:66:2342:10:360:-3.53688,0,-175.162	0/1:71:51,20:51:1806:20:716:-31.3558,0,-129.964	0/1:58:43,15:43:1528:15:532:-21.3206,0,-112.215	0/1:12:10,2:10:360:2:68:-1.79361,0,-27.8661	0/0:90:82,8:82:2932:8:288:0,-5.90252,-228.467	0/0:71:69,2:69:2480:2:72:0,-15.6649,-181.551	0/1:65:29,36:29:1044:36:1296:-72.1182,0,-57.0306	0/1:134:93,41:93:3265:41:1472:-64.6474,0,-233.594
chr05	29014874	.	A	G	2335.94	PASS	AB=0.227322;ABP=1775.79;AC=35;AF=0.188172;AN=186;AO=644;CIGAR=1X;DP=6666;DPB=6666;DPRA=1.14068;EPP=1375.5;EPPR=9238.48;GTI=19;LEN=1;MEANALT=1.04651;MQM=29.5854;MQMR=39.8872;NS=93;NUMALT=1;ODDS=1.90722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22982;QR=215100;RO=6020;RPL=1;RPP=1392.77;RPPR=13075.3;RPR=643;RUN=1;SAF=642;SAP=1384.12;SAR=2;SRF=5540;SRP=9238.48;SRR=480;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:464:0:0:0,-3.91339,-37.2864	0/0:87:87,0:87:3112:0:0:0,-26.1896,-237.532	0/0:61:61,0:61:2165:0:0:0,-18.3628,-171.086	0/1:138:114,24:114:4088:24:845:-18.4516,0,-271.995	0/0:73:73,0:73:2604:0:0:0,-21.9752,-205.871	0/0:39:39,0:39:1396:0:0:0,-11.7402,-117.709	0/1:57:37,20:37:1332:20:716:-35.1311,0,-84.8519	0/0:100:100,0:100:3550:0:0:0,-30.103,-277.916	0/1:49:41,8:41:1468:8:288:-6.43971,0,-93.4833	0/0:50:50,0:50:1784:0:0:0,-15.0515,-134.909	0/1:49:41,8:41:1476:8:288:-5.84342,0,-112.757	0/0:88:87,1:87:3111:1:36:0,-22.8924,-258.546	0/1:69:60,9:60:2160:9:324:-3.0316,0,-158.914	0/0:89:89,0:89:3200:0:0:0,-26.7917,-274.644	0/1:80:70,10:70:2507:10:360:-1.66377,0,-174.325	0/0:66:66,0:66:2351:0:0:0,-19.868,-200.359	0/0:70:70,0:70:2512:0:0:0,-21.0721,-210.803	0/0:60:60,0:60:2160:0:0:0,-18.0618,-182.97	0/0:26:24,2:24:860:2:68:0,-2.61732,-67.5404	0/1:153:113,40:113:4048:40:1427:-55.8372,0,-254.731	0/1:93:82,11:82:2914:11:396:-0.447374,0,-214.221	0/0:51:51,0:51:1805:0:0:0,-15.3525,-141.976	0/0:40:40,0:40:1436:0:0:0,-12.0412,-107.496	0/0:133:126,7:126:4456:7:252:0,-21.4593,-355.275	0/1:24:14,10:14:504:10:360:-19.1904,0,-33.4967	0/1:223:171,52:171:6144:52:1864:-64.4281,0,-388.937	0/1:99:57,42:57:2032:42:1508:-80.109,0,-118.767	0/0:54:54,0:54:1936:0:0:0,-16.2556,-160.678	0/1:155:99,56:99:3532:56:2008:-95.0541,0,-214.813	0/0:90:88,2:88:3111:2:72:0,-21.5774,-225.308	0/0:79:79,0:79:2817:0:0:0,-23.7814,-198.965	0/1:4:3,1:3:108:1:36:-1.69864,0,-7.57276	0/1:6:2,4:2:72:4:144:-8.93405,0,-5.03054	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.3836	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.9966	0/1:3:1,2:1:36:2:57:-3.80098,0,-2.07766	0/0:208:208,0:208:7449:0:0:0,-62.6142,-607.429	0/0:153:153,0:153:5439:0:0:0,-46.0576,-416.708	0/0:79:79,0:79:2832:0:0:0,-23.7814,-234.317	.:.:.:.:.:.:.:.	0/1:84:66,18:66:2364:18:625:-21.1435,0,-162.967	0/0:27:25,2:25:884:2:72:0,-2.61256,-65.0732	0/0:71:71,0:71:2537:0:0:0,-21.3731,-195.136	0/0:81:81,0:81:2904:0:0:0,-24.3834,-242.279	0/0:98:98,0:98:3482:0:0:0,-29.5009,-271.824	0/1:33:22,11:22:792:11:396:-18.2768,0,-46.1437	0/0:72:72,0:72:2565:0:0:0,-21.6742,-201.707	0/1:142:100,42:100:3588:42:1504:-64.4056,0,-236.549	0/1:57:43,14:43:1525:14:504:-18.669,0,-91.1165	0/1:89:67,22:67:2389:22:792:-29.5394,0,-157.506	0/0:81:81,0:81:2874:0:0:0,-24.3834,-224.494	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.1648	0/1:70:49,20:49:1748:20:712:-31.1219,0,-117.539	0/0:9:9,0:9:324:0:0:0,-2.70927,-25.2572	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.9926	0/0:81:81,0:81:2848:0:0:0,-24.3834,-232.564	0/1:30:25,5:25:900:5:165:-3.19378,0,-62.6893	0/0:16:16,0:16:576:0:0:0,-4.81648,-41.5328	0/0:16:16,0:16:576:0:0:0,-4.81648,-39.1638	0/0:46:46,0:46:1633:0:0:0,-13.8474,-123.676	0/1:163:135,27:135:4824:27:957:-19.9178,0,-316.85	0/1:2:1,1:1:36:1:36:-2.21902,0,-2.99621	0/0:137:137,0:137:4871:0:0:0,-41.2411,-346.57	0/1:152:116,36:116:4125:36:1288:-46.4463,0,-245.668	0/1:47:38,9:38:1360:9:315:-9.07746,0,-94.1529	0/0:58:58,0:58:2068:0:0:0,-17.4597,-146.369	0/0:123:123,0:123:4408:0:0:0,-37.0267,-315.959	0/1:64:55,9:55:1976:9:320:-3.35867,0,-139.284	0/0:31:31,0:31:1107:0:0:0,-9.33193,-97.424	0/1:30:16,14:16:568:14:500:-27.7299,0,-35.1418	0/0:155:155,0:155:5541:0:0:0,-46.6596,-435.602	0/0:10:10,0:10:356:0:0:0,-3.0103,-26.9978	0/0:31:31,0:31:1093:0:0:0,-9.33193,-80.6874	0/0:42:38,4:38:1360:4:144:0,-1.90303,-102.831	0/1:84:60,24:60:2152:24:847:-36.5022,0,-144.475	0/0:59:59,0:59:2116:0:0:0,-17.7608,-149.914	0/0:69:68,1:68:2425:1:36:0,-17.8683,-181.409	0/1:59:49,10:49:1733:10:360:-8.65439,0,-112.69	0/0:7:7,0:7:252:0:0:0,-2.10721,-18.7916	0/0:90:90,0:90:3213:0:0:0,-27.0927,-235.138	0/0:66:66,0:66:2357:0:0:0,-19.868,-195.634	0/0:128:128,0:128:4581:0:0:0,-38.5318,-339.654	0/1:165:141,24:141:5064:24:856:-11.4454,0,-358.217	0/0:42:42,0:42:1504:0:0:0,-12.6433,-124.326	0/0:81:80,1:80:2876:1:36:0,-20.7852,-209.991	0/0:126:126,0:126:4501:0:0:0,-37.9298,-360.518	0/1:78:66,12:66:2364:12:432:-7.79371,0,-176.589	0/0:77:77,0:77:2772:0:0:0,-23.1793,-224.654	0/0:58:58,0:58:2080:0:0:0,-17.4597,-170.186	0/1:14:12,2:12:428:2:72:-1.30083,0,-33.3809	0/1:95:84,11:84:3016:11:396:-0.429795,0,-230.627	0/1:85:69,16:69:2476:16:568:-15.1417,0,-169.818	0/0:66:66,0:66:2345:0:0:0,-19.868,-169.476	0/0:138:138,0:138:4952:0:0:0,-41.5421,-398.319
chr05	29014877	.	A	G	15115.3	PASS	AB=0.33465;ABP=1445.68;AC=80;AF=0.430108;AN=186;AO=2071;CIGAR=1X;DP=6672;DPB=6672;DPRA=8.61288;EPP=4500.13;EPPR=6296.83;GTI=20;LEN=1;MEANALT=1.02299;MQM=29.7451;MQMR=42.9222;NS=93;NUMALT=1;ODDS=1.0028;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74005;QR=164135;RO=4599;RPL=0;RPP=4500.13;RPPR=9989.61;RPR=2071;RUN=1;SAF=2071;SAP=4500.13;SAR=0;SRF=4125;SRP=6296.83;SRR=474;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:288:6:216:-11.5178,0,-20.3625	0/1:88:31,57:31:1086:57:2033:-121.15,0,-64.2394	0/1:60:40,20:40:1402:20:712:-33.6228,0,-97.9034	0/1:141:100,41:100:3576:41:1457:-61.3319,0,-235.631	0/1:74:39,35:39:1400:35:1256:-69.1998,0,-94.1571	0/1:39:29,10:29:1025:10:360:-14.4437,0,-78.8391	0/1:55:46,9:46:1652:9:324:-6.57622,0,-108.551	0/1:101:50,51:50:1755:51:1832:-101.503,0,-118.308	0/1:50:29,21:29:1040:21:748:-40.0363,0,-61.8645	0/1:50:26,24:26:928:24:856:-45.6708,0,-59.4988	0/0:47:44,3:44:1561:3:108:0,-6.24938,-124.448	0/1:89:68,21:68:2425:21:741:-27.5471,0,-187.259	0/1:68:57,11:57:2037:11:396:-8.27603,0,-150.262	0/1:89:76,13:76:2717:13:464:-6.79022,0,-212.486	0/0:80:71,9:71:2540:9:324:0,-1.53076,-177.769	0/1:63:49,14:49:1756:14:504:-17.9002,0,-136.368	0/1:68:52,16:52:1868:16:576:-21.9915,0,-142.36	0/1:58:47,11:47:1688:11:396:-11.7059,0,-130.436	0/1:26:18,8:18:648:8:284:-13.8644,0,-48.7761	0/0:152:140,12:140:4944:12:428:0,-16.6596,-337.171	0/1:94:79,15:79:2820:15:540:-11.811,0,-207.691	0/1:51:29,22:29:1025:22:784:-40.3257,0,-71.2351	0/1:40:24,16:24:845:16:576:-28.9385,0,-54.0745	0/1:133:94,39:94:3338:39:1400:-62.0365,0,-251.736	0/0:24:22,2:22:788:2:72:0,-1.70947,-56.5991	0/1:220:154,66:154:5468:66:2363:-100.354,0,-342.931	0/1:100:72,28:72:2580:28:1008:-43.0102,0,-158.76	0/1:54:42,12:42:1508:12:432:-14.1973,0,-114.11	0/1:159:117,42:117:4177:42:1504:-58.3039,0,-259.801	0/1:89:40,49:40:1421:49:1764:-100.632,0,-81.5142	0/1:79:54,25:54:1936:25:892:-39.7991,0,-113.201	0/1:3:2,1:2:72:1:36:-1.99967,0,-4.61216	0/0:7:7,0:7:252:0:0:0,-2.10721,-19.8495	0/1:4:1,3:1:36:3:108:-6.92362,0,-2.39415	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.9966	0/0:3:3,0:3:93:0:0:0,-0.90309,-7.40358	0/1:206:156,50:156:5588:50:1788:-66.331,0,-409.529	0/1:153:60,93:60:2160:93:3328:-196.168,0,-131.747	0/1:78:59,19:59:2120:19:680:-26.1558,0,-158.513	.:.:.:.:.:.:.:.	0/1:88:69,19:69:2472:19:680:-23.3328,0,-170.518	0/1:28:24,4:24:856:4:144:-2.31139,0,-59.7561	0/1:72:33,39:33:1188:39:1400:-80.3993,0,-76.2005	0/1:81:67,14:67:2396:14:504:-11.4443,0,-181.272	0/1:99:76,23:76:2717:23:819:-28.6491,0,-187.71	0/1:34:30,4:30:1044:4:144:-0.202981,0,-64.1998	0/1:74:29,45:29:1040:45:1600:-96.3712,0,-66.6098	0/1:141:110,31:110:3910:31:1097:-35.3988,0,-259.442	0/1:56:46,10:46:1637:10:351:-8.34571,0,-99.36	0/1:89:58,31:58:2050:31:1101:-51.5638,0,-133.797	0/1:83:46,37:46:1656:37:1305:-68.1902,0,-113.121	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.1648	0/1:70:47,23:47:1661:23:824:-39.6148,0,-109.927	0/1:10:8,2:8:288:2:72:-2.34975,0,-19.7112	0/1:5:1,4:1:36:4:144:-9.23508,0,-2.09312	0/1:85:54,31:54:1936:31:1096:-54.9408,0,-140.665	0/1:30:23,6:23:815:6:216:-6.64874,0,-56.7359	0/1:15:9,6:9:320:6:216:-11.0005,0,-19.1862	0/1:16:13,3:13:468:3:104:-2.9917,0,-26.7276	0/1:47:22,25:22:792:25:896:-51.3501,0,-48.091	0/1:159:133,26:133:4742:26:932:-18.1878,0,-313.561	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.09839	0/1:138:52,86:52:1853:86:3080:-178.513,0,-89.9096	0/1:154:116,38:116:4136:38:1351:-51.62,0,-245.305	0/1:51:36,15:36:1273:15:540:-24.738,0,-86.7853	0/1:56:14,41:14:504:41:1472:-88.6599,0,-17.5177	0/1:127:85,42:85:3028:42:1477:-66.449,0,-182.351	0/0:62:59,3:59:2124:3:108:0,-10.7648,-160.966	0/0:30:30,0:30:1056:0:0:0,-9.0309,-92.8317	0/1:31:24,7:24:864:7:252:-9.24576,0,-55.9615	0/1:154:115,39:115:4110:39:1389:-50.7034,0,-288.547	0/1:10:8,2:8:288:2:68:-2.25729,0,-19.002	0/1:31:15,16:15:532:16:557:-31.6977,0,-30.9624	0/1:42:32,10:32:1136:10:360:-13.9729,0,-84.7473	0/1:85:74,11:74:2637:11:392:-2.68132,0,-179.55	0/1:60:16,44:16:572:44:1584:-95.395,0,-21.3832	0/1:69:24,45:24:856:45:1601:-96.3475,0,-48.9418	0/1:60:43,17:43:1527:17:612:-27.2423,0,-96.6124	0/1:7:3,4:3:104:4:144:-8.63302,0,-6.11336	0/1:87:29,58:29:1044:58:2080:-125.569,0,-50.4156	0/1:67:47,20:47:1647:20:716:-32.2669,0,-123.396	0/1:129:54,75:54:1917:75:2657:-151.403,0,-111.729	0/1:164:131,33:131:4704:33:1184:-34.5568,0,-332.56	0/1:43:29,14:29:1044:14:504:-23.5803,0,-78.5957	0/1:81:68,13:68:2428:13:468:-8.90533,0,-158.925	0/1:126:82,44:82:2940:44:1580:-73.1843,0,-212.224	0/1:73:63,10:63:2260:10:356:-4.33528,0,-167.904	0/1:77:54,23:54:1940:23:824:-37.4744,0,-140.706	0/1:58:42,16:42:1504:16:576:-24.0649,0,-110.402	0/1:13:11,2:11:392:2:72:-1.60186,0,-30.7002	0/0:94:86,8:86:3092:8:288:0,-7.10664,-241.766	0/0:85:84,1:84:3004:1:36:0,-22.7665,-229.998	0/1:68:32,36:32:1148:36:1283:-70.8264,0,-64.3574	0/1:136:95,41:95:3416:41:1459:-63.6568,0,-246.22
chr05	29014878	.	C	T	15936.4	PASS	AB=0.32106;ABP=1808.28;AC=84;AF=0.451613;AN=186;AO=2102;CIGAR=1X;DP=6729;DPB=6729;DPRA=11.891;EPP=4567.45;EPPR=6396.57;GTI=22;LEN=1;MEANALT=1;MQM=32.1984;MQMR=41.9544;NS=93;NUMALT=1;ODDS=0.237852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75289;QR=165434;RO=4627;RPL=0;RPP=4567.45;RPPR=10041.7;RPR=2102;RUN=1;SAF=2102;SAP=4567.45;SAR=0;SRF=4160;SRP=6403.5;SRR=467;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:11,3:11:396:3:108:-4.13169,0,-27.7436	0/1:89:75,14:75:2688:14:504:-11.0639,0,-179.382	0/1:61:42,19:42:1512:19:684:-32.9061,0,-103.757	0/1:140:103,37:103:3673:37:1332:-51.3871,0,-243.081	0/1:74:40,34:40:1436:34:1220:-77.9606,0,-85.4008	0/1:38:19,19:19:676:19:684:-48.4329,0,-43.8322	0/1:58:39,19:39:1404:19:680:-31.7316,0,-90.1698	0/1:100:82,18:82:2943:18:644:-18.3615,0,-202.144	0/1:49:32,17:32:1140:17:608:-31.0313,0,-68.7442	0/1:50:38,12:38:1351:12:428:-15.6099,0,-89.7512	0/0:49:44,5:44:1572:5:180:0,-1.7735,-121.608	0/0:87:79,8:79:2828:8:288:0,-4.43012,-219.007	0/1:69:55,14:55:1968:14:500:-16.9625,0,-144.346	0/1:89:52,37:52:1868:37:1328:-88.0556,0,-133.244	0/1:81:55,26:55:1964:26:936:-38.9499,0,-138.085	0/1:66:45,21:45:1620:21:747:-44.6823,0,-117.437	0/1:70:59,11:59:2104:11:396:-8.73542,0,-160.091	0/1:58:31,27:31:1112:27:948:-66.7795,0,-75.7502	0/0:27:26,1:26:936:1:36:0,-5.14706,-75.6628	0/1:150:85,65:85:3039:65:2325:-111.881,0,-191.359	0/1:97:33,64:33:1167:64:2273:-163.605,0,-59.5766	0/1:50:41,9:41:1468:9:324:-8.15579,0,-102.325	0/1:41:25,16:25:887:16:576:-28.6375,0,-56.8951	0/1:132:79,53:79:2809:53:1899:-126.351,0,-186.449	0/1:24:19,5:19:684:5:180:-6.19975,0,-46.4772	0/1:222:163,59:163:5827:59:2124:-75.4877,0,-375.986	0/1:100:73,27:73:2612:27:957:-39.2124,0,-162.449	0/1:53:44,9:44:1575:9:320:-7.74327,0,-117.377	0/1:158:115,43:115:4100:43:1533:-61.3314,0,-253.45	0/1:91:60,31:60:2143:31:1108:-53.6759,0,-132.976	0/1:80:31,49:31:1100:49:1764:-96.8218,0,-58.7681	0/1:4:3,1:3:104:1:36:-1.69864,0,-7.46539	0/0:7:7,0:7:237:0:0:0,-2.10721,-19.0688	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.3836	0/1:6:1,5:1:36:5:180:-13.949,0,-1.79209	0/1:3:2,1:2:72:1:36:-2.07766,0,-4.61216	0/1:209:164,45:164:5857:45:1599:-51.0566,0,-431.765	0/1:156:128,28:128:4562:28:1004:-26.4458,0,-306.039	0/1:81:46,35:46:1635:35:1252:-80.271,0,-111.369	.:.:.:.:.:.:.:.	0/1:89:67,22:67:2385:22:788:-30.043,0,-165.348	0/1:28:15,13:15:540:13:468:-25.8238,0,-36.7241	0/1:75:58,17:58:2072:17:589:-20.2791,0,-139.854	0/1:82:69,13:69:2480:13:468:-7.20553,0,-188.96	0/1:99:67,32:67:2388:32:1129:-47.5932,0,-167.756	0/1:34:18,16:18:629:16:568:-29.0237,0,-35.1335	0/1:74:46,28:46:1652:28:1008:-63.7311,0,-100.654	0/1:145:112,33:112:4012:33:1188:-40.4926,0,-267.345	0/1:60:28,32:28:995:32:1148:-61.914,0,-54.8652	0/1:89:74,15:74:2641:15:540:-11.575,0,-174.684	0/1:82:67,15:67:2408:15:540:-13.6822,0,-166.56	0/1:5:2,3:2:72:3:108:-6.14815,0,-5.33157	0/1:71:62,9:62:2220:9:324:-2.00149,0,-151.118	0/1:9:4,5:4:144:5:180:-10.2677,0,-9.16654	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.9926	0/1:85:45,40:45:1587:40:1421:-94.3391,0,-99.0802	0/1:30:23,7:23:815:7:252:-9.02402,0,-56.2851	0/1:15:8,7:8:288:7:252:-12.751,0,-17.4968	0/1:16:3,13:3:99:13:460:-26.639,0,-2.77157	0/1:47:32,15:32:1130:15:540:-25.3999,0,-73.9782	0/1:160:98,62:98:3515:62:2232:-101.71,0,-233.072	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.09839	0/1:141:90,51:90:3217:51:1832:-85.7731,0,-189.18	0/1:154:82,72:82:2935:72:2584:-127.86,0,-168.928	0/1:53:36,17:36:1296:17:612:-32.9588,0,-85.0416	0/1:59:45,14:45:1608:14:500:-16.5066,0,-97.8354	0/1:124:56,68:56:2000:68:2440:-128.566,0,-115.163	0/1:64:40,24:40:1423:24:864:-41.9515,0,-100.054	0/1:31:26,5:26:932:5:180:-4.65725,0,-74.8669	0/1:31:24,7:24:847:7:252:-10.3032,0,-54.3651	0/1:157:113,44:113:4043:44:1584:-60.3734,0,-287.903	0/1:10:4,6:4:144:6:216:-12.5056,0,-8.86551	0/1:31:16,15:16:568:15:540:-31.2063,0,-31.8975	0/1:42:20,22:20:720:22:788:-55.2793,0,-43.8508	0/1:85:56,29:56:2008:29:1020:-50.0905,0,-131.867	0/1:60:46,14:46:1629:14:504:-14.896,0,-101.322	0/1:68:55,13:55:1980:13:468:-14.7028,0,-130.149	0/1:59:27,32:27:968:32:1148:-68.7631,0,-53.5628	0/1:7:4,3:4:144:3:108:-6.2389,0,-8.63302	0/1:90:65,25:65:2336:25:884:-38.1467,0,-146.329	0/1:68:39,29:39:1400:29:1044:-68.9449,0,-92.6734	0/1:129:94,35:94:3380:35:1260:-51.0841,0,-215.303	0/1:165:129,36:129:4624:36:1296:-42.0889,0,-327.366	0/0:43:39,4:39:1404:4:129:0,-3.22057,-107.808	0/1:81:38,43:38:1352:43:1548:-79.1604,0,-88.9384	0/1:126:105,21:105:3755:21:756:-15.7447,0,-269.624	0/1:77:43,34:43:1531:34:1220:-80.539,0,-101.401	0/1:76:60,16:60:2142:16:576:-20.896,0,-154.475	0/1:59:46,13:46:1639:13:468:-16.5122,0,-120.134	0/0:14:14,0:14:500:0:0:0,-4.21442,-43.07	0/1:96:52,44:52:1872:44:1580:-105.714,0,-127.314	0/1:86:50,36:50:1796:36:1296:-64.4025,0,-123.041	0/1:68:45,23:45:1604:23:820:-35.1833,0,-99.7533	0/1:136:113,23:113:4064:23:828:-13.336,0,-296.99
chr05	29014884	.	G	A	2109.88	PASS	AB=0.223389;ABP=1838.61;AC=35;AF=0.188172;AN=186;AO=636;CIGAR=1X;DP=6760;DPB=6760;DPRA=1.11527;EPP=1375.39;EPPR=9434.59;GTI=19;LEN=1;MEANALT=1;MQM=29.706;MQMR=39.9143;NS=93;NUMALT=1;ODDS=2.83249;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22652;QR=219189;RO=6123;RPL=1;RPP=1375.39;RPPR=13281.6;RPR=635;RUN=1;SAF=636;SAP=1384.07;SAR=0;SRF=5642;SRP=9449.22;SRR=481;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:536:0:0:0,-4.51545,-42.8634	0/0:89:89,0:89:3184:0:0:0,-26.7917,-243.621	0/0:59:59,0:59:2101:0:0:0,-17.7608,-166.16	0/1:139:118,21:118:4232:21:752:-12.3691,0,-282.788	0/0:77:77,0:77:2772:0:0:0,-23.1793,-218.235	0/0:45:45,0:45:1612:0:0:0,-13.5463,-135.381	0/1:58:39,19:39:1391:19:684:-31.676,0,-90.1308	0/0:103:103,0:103:3685:0:0:0,-31.0061,-289.978	0/1:50:42,8:42:1470:8:284:-6.03371,0,-94.6372	0/0:48:48,0:48:1728:0:0:0,-14.4494,-131.303	0/1:49:41,8:41:1468:8:284:-5.75461,0,-112.037	0/0:85:85,0:85:3044:0:0:0,-25.5875,-256.045	0/1:69:60,9:60:2141:9:324:-3.0316,0,-158.228	0/0:91:91,0:91:3263:0:0:0,-27.3937,-280.017	0/1:80:70,10:70:2516:10:360:-1.66377,0,-174.131	0/0:66:66,0:66:2368:0:0:0,-19.868,-201.631	0/0:70:69,0:69:2467:0:0:0,-20.7711,-206.543	0/0:60:60,0:60:2160:0:0:0,-18.0618,-183.008	0/0:25:23,2:23:828:2:72:0,-2.25195,-64.609	0/1:150:114,36:114:4073:36:1288:-46.6339,0,-258.151	0/1:94:82,12:82:2944:12:432:-3.38771,0,-215.73	0/0:56:56,0:56:2008:0:0:0,-16.8577,-155.031	0/0:40:40,0:40:1436:0:0:0,-12.0412,-107.496	0/0:133:126,7:126:4516:7:252:0,-21.4593,-358.688	0/1:28:18,10:18:648:10:360:-17.9863,0,-43.4283	0/1:224:171,53:171:6109:53:1904:-67.5173,0,-386.503	0/1:97:58,39:58:2080:39:1396:-73.3941,0,-122.479	0/0:54:54,0:54:1944:0:0:0,-16.2556,-160.885	0/1:159:102,57:102:3655:57:2037:-96.5546,0,-221.411	0/0:91:88,3:88:3141:3:108:0,-18.6203,-224.609	0/0:80:80,0:80:2861:0:0:0,-24.0824,-202.3	0/1:4:3,1:3:108:1:36:-1.69864,0,-7.57276	0/1:7:2,5:2:72:5:180:-11.2455,0,-4.72951	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.3836	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.9966	0/1:3:1,2:1:36:2:72:-4.61216,0,-2.07766	0/0:210:210,0:210:7543:0:0:0,-63.2163,-614.299	0/0:158:158,0:158:5649:0:0:0,-47.5627,-432.632	0/0:80:80,0:80:2864:0:0:0,-24.0824,-237.568	.:.:.:.:.:.:.:.	0/1:90:71,19:71:2536:19:680:-23.0238,0,-175.383	0/0:28:26,2:26:936:2:72:0,-2.91359,-68.3574	0/0:76:76,0:76:2705:0:0:0,-22.8783,-208.151	0/0:80:80,0:80:2868:0:0:0,-24.0824,-238.056	0/0:100:100,0:100:3575:0:0:0,-30.103,-279.52	0/1:33:22,11:22:792:11:381:-17.5636,0,-46.1437	0/0:74:74,0:74:2652:0:0:0,-22.2762,-208.151	0/1:143:99,44:99:3524:44:1553:-67.6938,0,-232.627	0/1:58:44,14:44:1553:14:489:-17.6563,0,-94.2218	0/1:87:66,21:66:2348:21:737:-26.5309,0,-154.577	0/0:84:84,0:84:2997:0:0:0,-25.2865,-232.676	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.1648	0/1:68:49,19:49:1756:19:680:-29.1233,0,-117.719	0/0:12:12,0:12:428:0:0:0,-3.61236,-34.1911	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.9926	0/0:87:87,0:87:3096:0:0:0,-26.1896,-252.214	0/1:30:26,4:26:936:4:129:-0.681437,0,-65.2269	0/0:16:16,0:16:576:0:0:0,-4.81648,-41.5328	0/0:16:16,0:16:572:0:0:0,-4.81648,-39.1024	0/0:46:46,0:46:1629:0:0:0,-13.8474,-123.892	0/1:158:133,25:133:4763:25:885:-15.7694,0,-312.658	0/1:2:1,1:1:36:1:36:-2.21902,0,-2.99621	0/0:140:140,0:140:5006:0:0:0,-42.1442,-357.197	0/1:157:122,35:122:4372:35:1256:-42.4901,0,-262.465	0/1:54:43,11:43:1548:11:381:-12.6247,0,-108.063	0/0:58:58,0:58:2084:0:0:0,-17.4597,-147.645	0/0:126:126,0:126:4493:0:0:0,-37.9298,-321.796	0/1:63:54,9:54:1936:9:310:-3.4463,0,-136.415	0/0:32:32,0:32:1152:0:0:0,-9.63296,-101.474	0/1:30:16,14:16:576:14:504:-27.8342,0,-35.3679	0/0:153:153,0:153:5458:0:0:0,-46.0576,-430.812	0/0:10:10,0:10:352:0:0:0,-3.0103,-26.6347	0/0:31:31,0:31:1112:0:0:0,-9.33193,-81.5801	0/0:43:39,4:39:1400:4:140:0,-2.31047,-106.25	0/1:87:63,24:63:2260:24:849:-35.3777,0,-151.113	0/0:61:61,0:61:2192:0:0:0,-18.3628,-156.575	0/0:81:80,1:80:2838:1:36:0,-21.4807,-214.438	0/1:60:49,11:49:1756:11:392:-10.8613,0,-113.127	0/0:7:7,0:7:252:0:0:0,-2.10721,-18.7916	0/0:93:93,0:93:3333:0:0:0,-27.9958,-244.995	0/0:68:68,0:68:2436:0:0:0,-20.47,-201.994	0/0:132:132,0:132:4736:0:0:0,-39.736,-352.246	0/1:165:142,23:142:5104:23:828:-9.08241,0,-360.95	0/0:42:42,0:42:1512:0:0:0,-12.6433,-125.145	0/0:81:81,0:81:2908:0:0:0,-24.3834,-216.741	0/0:126:126,0:126:4505:0:0:0,-37.9298,-360.47	0/1:73:62,11:62:2213:11:396:-6.68607,0,-164.513	0/0:76:76,0:76:2719:0:0:0,-22.8783,-220.998	0/0:59:59,0:59:2109:0:0:0,-17.7608,-171.929	0/1:13:11,2:11:396:2:72:-1.60186,0,-30.8048	0/1:96:84,12:84:3016:12:428:-2.63676,0,-229.444	0/1:84:67,17:67:2408:17:593:-17.3593,0,-165.218	0/0:68:68,0:68:2444:0:0:0,-20.47,-176.925	0/0:137:137,0:137:4912:0:0:0,-41.2411,-394.092
chr05	29014885	.	C	A	54561.4	PASS	AB=0.485659;ABP=15.0307;AC=93;AF=0.5;AN=186;AO=3303;CIGAR=1X;DP=6772;DPB=6772;DPRA=21.2402;EPP=3636.73;EPPR=7490.29;GTI=6;LEN=1;MEANALT=1.05495;MQM=42.4299;MQMR=35.6042;NS=93;NUMALT=1;ODDS=0.60364;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118106;QR=123634;RO=3464;RPL=0;RPP=7175.38;RPPR=7490.29;RPR=3303;RUN=1;SAF=2827;SAP=3636.73;SAR=476;SRF=3464;SRP=7524.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:9,6:9:320:6:216:-13.5769,0,-20.8341	0/1:88:73,15:73:2579:15:540:-15.1448,0,-170.98	0/1:59:36,23:36:1279:23:811:-46.5338,0,-83.6895	0/1:144:99,45:99:3509:45:1592:-74.5167,0,-228.019	0/1:78:39,39:39:1380:39:1400:-92.953,0,-78.2532	0/1:44:16,28:16:572:28:992:-74.5735,0,-30.8126	0/1:59:29,30:29:1044:30:1072:-67.0086,0,-57.4648	0/1:102:79,23:79:2797:23:813:-33.8117,0,-189.255	0/1:49:30,19:30:1071:19:665:-35.8589,0,-64.3823	0/1:49:35,14:35:1232:14:496:-22.0371,0,-79.1308	0/1:49:11,38:11:396:38:1364:-104.785,0,-13.4603	0/1:89:22,67:22:768:67:2379:-183.123,0,-29.7045	0/1:69:30,39:30:1057:39:1396:-97.3651,0,-62.4123	0/1:90:24,66:24:847:66:2372:-181.437,0,-42.1317	0/1:81:25,55:25:888:55:1965:-131.752,0,-41.818	0/1:66:14,52:14:504:52:1868:-145.529,0,-16.9971	0/1:71:16,55:16:572:55:1957:-148.905,0,-21.2272	0/1:60:13,47:13:468:47:1675:-128.664,0,-16.9422	0/1:27:12,15:12:428:15:540:-40.2488,0,-25.0437	0/1:152:83,69:83:2980:69:2468:-123.102,0,-184.667	0/1:95:27,68:27:968:68:2428:-178.327,0,-42.1698	0/1:56:46,10:46:1611:10:352:-9.14411,0,-110.062	0/1:41:17,24:17:603:24:856:-54.3948,0,-31.0665	0/1:133:72,61:72:2576:61:2172:-151.747,0,-163.025	0/1:29:19,10:19:680:10:351:-20.1032,0,-42.7847	0/1:222:165,57:165:5924:57:2052:-70.4093,0,-381.521	0/1:100:70,30:70:2499:30:1076:-48.6172,0,-152.453	0/1:54:12,42:12:432:42:1508:-114.11,0,-14.1973	0/1:161:118,43:118:4228:43:1498:-59.2813,0,-261.718	0/1:92:56,36:56:1999:36:1288:-69.3205,0,-119.973	0/1:78:24,54:24:860:54:1925:-112.954,0,-38.3518	0/1:4:3,1:3:108:1:36:-1.69864,0,-7.57276	0/1:7:6,1:6:216:1:36:-1.49107,0,-14.4955	0/1:4:3,1:3:108:1:36:-2.39415,0,-6.92362	1/1:6:0,6:0:0:6:216:-18.9966,-1.80618,0	0/1:3:2,1:2:72:1:36:-2.07766,0,-4.61216	0/1:206:68,138:68:2420:138:4948:-353.198,0,-122.678	0/1:158:126,32:126:4498:32:1144:-38.4459,0,-301.746	0/1:78:26,52:26:923:52:1864:-136.143,0,-47.6005	.:.:.:.:.:.:.:.	0/1:89:59,30:59:2100:30:1068:-55.5061,0,-139.81	0/1:28:9,19:9:324:19:680:-45.1723,0,-17.2749	0/1:76:49,27:49:1738:27:968:-53.0294,0,-109.551	0/1:83:20,63:20:720:63:2256:-168.091,0,-30.2962	0/1:98:37,60:37:1315:60:2152:-140.043,0,-74.0266	0/1:32:15,17:15:540:17:608:-33.6616,0,-28.7337	0/1:75:46,29:46:1652:29:1036:-66.2201,0,-99.7252	0/1:141:101,40:101:3569:40:1436:-64.993,0,-230.012	0/1:58:25,33:25:900:33:1180:-66.371,0,-46.991	0/1:88:67,21:67:2404:21:752:-31.2409,0,-154.485	0/1:84:64,20:64:2292:20:697:-27.4294,0,-155.166	0/1:5:2,3:2:72:3:104:-6.08494,0,-5.33157	0/1:69:54,15:54:1923:15:540:-24.24,0,-126.21	0/1:12:4,8:4:144:8:288:-19.1091,0,-8.26345	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.9926	0/1:86:47,39:47:1680:39:1400:-92.42,0,-106.669	0/1:31:23,8:23:824:8:288:-11.9712,0,-56.3666	0/1:16:9,7:9:324:7:252:-12.45,0,-19.7326	0/1:15:3,12:3:108:12:428:-24.4,0,-3.38358	0/1:47:26,21:26:924:21:752:-45.3755,0,-54.1266	0/1:160:51,109:51:1823:109:3903:-252.665,0,-82.0381	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.09839	0/1:139:87,52:87:3107:52:1860:-90.1406,0,-181.227	0/1:159:80,79:80:2872:79:2832:-150.009,0,-158.032	0/1:53:34,18:34:1202:18:648:-36.8384,0,-78.1393	0/1:60:46,14:46:1652:14:500:-16.2056,0,-100.58	0/1:124:51,73:51:1820:73:2615:-144.973,0,-99.0404	0/1:64:37,27:37:1324:27:968:-51.5876,0,-90.7799	1/1:30:1,29:1:36:29:1036:-88.0672,-5.43263,0	0/1:31:22,9:22:788:9:320:-16.6693,0,-48.329	0/1:154:56,98:56:2003:98:3490:-233.081,0,-104.82	0/1:10:4,6:4:144:6:216:-12.5056,0,-8.86551	0/1:30:16,14:16:572:14:488:-28.3366,0,-32.3028	0/1:42:17,25:17:608:25:896:-64.9969,0,-33.7656	0/1:89:40,49:40:1428:49:1760:-115.246,0,-76.1748	0/1:63:47,16:47:1676:16:576:-20.4823,0,-103.594	0/1:79:64,15:64:2288:15:525:-17.0408,0,-149.632	0/1:58:27,31:27:968:31:1116:-66.5029,0,-53.2638	0/1:7:4,3:4:144:3:108:-6.2389,0,-8.63302	0/1:92:63,28:63:2264:28:1004:-46.0923,0,-139.504	0/1:67:34,33:34:1212:33:1180:-81.753,0,-76.3133	0/1:129:88,41:88:3152:41:1476:-71.2239,0,-196.204	0/1:167:74,92:74:2644:92:3308:-222.818,0,-148.854	0/1:42:18,24:18:648:24:852:-61.8768,0,-36.8511	0/1:81:21,60:21:756:60:2160:-133.613,0,-34.8425	0/1:125:66,59:66:2320:59:2101:-137.297,0,-142.63	0/1:76:21,55:21:756:55:1960:-146.86,0,-31.7098	0/1:74:21,53:21:756:53:1900:-140.323,0,-33.2139	0/1:58:16,42:16:576:42:1504:-110.295,0,-24.0649	0/1:14:6,8:6:216:8:288:-22.053,0,-13.0259	0/1:96:24,72:24:855:72:2588:-195.983,0,-36.2639	0/1:86:29,57:29:1040:57:2048:-132.413,0,-55.2852	0/1:68:37,31:37:1332:31:1112:-63.2845,0,-74.4556	0/1:137:40,97:40:1431:97:3480:-252.034,0,-60.9925
chr05	29014891	.	C	T	15971.5	PASS	AB=0.313941;ABP=1998.07;AC=84;AF=0.451613;AN=186;AO=2101;CIGAR=1X;DP=6872;DPB=6872;DPRA=12.5385;EPP=4487.44;EPPR=4862.89;GTI=24;LEN=1;MEANALT=1.02273;MQM=32.2094;MQMR=42.1982;NS=93;NUMALT=1;ODDS=0.947004;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75260;QR=170330;RO=4769;RPL=9;RPP=4487.44;RPPR=2451.67;RPR=2092;RUN=1;SAF=2101;SAP=4565.27;SAR=0;SRF=4291;SRP=6623.05;SRR=478;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:12,3:12:432:3:108:-3.83066,0,-30.6666	0/1:89:74,15:74:2648:15:540:-14.2839,0,-176.118	0/1:59:41,18:41:1457:18:648:-30.8255,0,-100.563	0/1:144:106,38:106:3812:38:1368:-52.722,0,-253.054	0/1:79:45,34:45:1616:34:1224:-76.7989,0,-97.7732	0/1:45:26,19:26:913:19:684:-46.3257,0,-61.4594	0/1:57:38,19:38:1364:19:680:-32.0326,0,-88.5452	0/1:104:86,18:86:3088:18:648:-17.2791,0,-212.88	0/1:50:33,17:33:1188:17:608:-30.7302,0,-71.9778	0/1:50:38,12:38:1334:12:428:-15.6099,0,-88.548	0/0:48:43,5:43:1548:5:180:0,-1.47247,-118.904	0/0:89:81,8:81:2890:8:288:0,-5.03218,-224.913	0/1:69:55,14:55:1963:14:504:-17.0845,0,-143.682	0/1:88:51,37:51:1836:37:1320:-87.67,0,-130.039	0/1:82:55,27:55:1961:27:972:-41.1884,0,-137.24	0/1:66:45,21:45:1616:21:756:-45.4705,0,-117.077	0/1:71:60,11:60:2147:11:396:-8.43439,0,-162.33	0/1:61:34,27:34:1200:27:972:-67.2856,0,-82.1362	0/0:27:26,1:26:906:1:36:0,-5.14706,-73.7506	0/1:148:83,65:83:2984:65:2336:-112.432,0,-190.287	0/1:96:33,63:33:1184:63:2231:-160.976,0,-60.4275	0/1:55:46,9:46:1644:9:324:-6.65064,0,-112.359	0/1:40:25,15:25:900:15:536:-26.3113,0,-58.1123	0/1:133:80,53:80:2828:53:1908:-127.434,0,-186.849	0/1:28:22,5:22:788:5:180:-5.07644,0,-53.4618	0/1:299:240,59:240:8550:59:2120:-52.3067,0,-596.518	0/1:99:73,26:73:2624:26:921:-37.7117,0,-163.275	0/1:54:45,9:45:1596:9:324:-7.54705,0,-118.963	0/1:161:118,43:118:4206:43:1539:-60.8356,0,-260.48	0/1:92:61,31:61:2177:31:1116:-53.5826,0,-135.846	0/1:80:31,49:31:1116:49:1764:-96.0712,0,-59.1198	0/1:4:3,1:3:108:1:36:-1.69864,0,-7.57276	0/0:7:7,0:7:252:0:0:0,-2.10721,-19.8495	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.3836	0/1:5:1,4:1:36:4:144:-11.0648,0,-2.09312	0/1:3:2,1:2:72:1:36:-2.07766,0,-4.61216	0/1:208:164,44:164:5862:44:1576:-49.207,0,-431.371	0/1:158:130,28:130:4638:28:1008:-25.9477,0,-312.054	0/1:81:46,35:46:1644:35:1230:-78.5348,0,-111.412	.:.:.:.:.:.:.:.	0/1:90:68,22:68:2419:22:792:-29.8461,0,-168.064	0/1:28:15,13:15:536:13:468:-25.8238,0,-36.3624	0/1:76:59,17:59:2109:17:612:-20.9777,0,-142.384	0/1:82:69,13:69:2476:13:468:-7.20553,0,-188.872	0/1:99:67,32:67:2404:32:1144:-48.2366,0,-168.927	0/1:33:17,16:17:597:16:572:-29.4129,0,-32.9262	0/1:74:46,28:46:1656:28:1004:-63.4034,0,-100.758	0/1:147:114,33:114:4076:33:1188:-39.8906,0,-270.856	0/1:56:26,30:26:932:30:1072:-58.0377,0,-51.4489	0/1:89:74,15:74:2656:15:536:-11.4868,0,-175.83	0/1:83:67,16:67:2408:16:572:-15.832,0,-165.632	0/1:5:2,3:2:72:3:108:-6.14815,0,-5.33157	0/1:70:61,9:61:2184:9:324:-2.30252,0,-149.063	0/1:12:7,5:7:248:5:180:-9.36461,0,-17.6307	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.9926	0/1:90:49,41:49:1703:41:1457:-96.0447,0,-108.167	0/1:30:23,7:23:820:7:252:-9.02402,0,-56.6063	0/1:15:9,6:9:320:6:216:-10.21,0,-19.945	0/1:16:3,13:3:108:13:468:-26.7276,0,-3.08255	0/1:47:32,15:32:1129:15:540:-25.3999,0,-73.5312	0/1:160:98,62:98:3512:62:2224:-101.621,0,-233.603	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.09839	0/1:140:89,51:89:3182:51:1832:-86.0741,0,-187.109	0/1:161:88,73:88:3156:73:2574:-126.782,0,-184.078	0/1:53:36,17:36:1275:17:608:-32.8546,0,-85.3711	0/1:59:46,13:46:1652:13:464:-13.9667,0,-100.613	0/1:126:57,69:57:2017:69:2475:-130.618,0,-115.962	0/1:63:39,24:39:1392:24:851:-41.8633,0,-97.4121	0/1:31:26,5:26:917:5:180:-4.65725,0,-73.5127	0/1:31:24,7:24:864:7:252:-10.3032,0,-54.9158	0/1:152:110,42:110:3935:42:1508:-57.1046,0,-279.525	0/1:10:4,6:4:144:6:212:-12.4164,0,-8.86551	0/1:31:16,15:16:572:15:536:-31.0843,0,-32.0018	0/1:43:21,22:21:748:22:788:-55.2326,0,-46.3254	0/1:89:60,29:60:2129:29:1044:-50.5549,0,-140.319	0/1:62:48,14:48:1712:14:504:-14.2939,0,-107.815	0/1:79:66,13:66:2364:13:464:-11.2694,0,-156.83	0/1:59:27,32:27:936:32:1152:-68.8845,0,-52.0011	0/1:7:4,3:4:144:3:93:-5.37852,0,-8.63302	0/1:93:67,26:67:2412:26:932:-38.6452,0,-151.373	0/1:68:39,29:39:1404:29:1044:-68.9449,0,-92.4066	0/1:131:95,35:95:3392:35:1252:-50.342,0,-217.456	0/1:166:130,36:130:4657:36:1296:-41.7879,0,-329.644	0/0:42:38,4:38:1355:4:144:0,-2.1297,-103.118	0/1:80:36,44:36:1288:44:1580:-81.9866,0,-83.5646	0/1:127:105,22:105:3714:22:792:-18.6406,0,-265.422	0/1:77:43,34:43:1511:34:1220:-80.745,0,-99.655	0/1:78:61,17:61:2171:17:604:-22.4969,0,-156.271	0/1:58:45,13:45:1616:13:468:-16.8132,0,-117.923	0/0:13:13,0:13:468:0:0:0,-3.91339,-39.9344	0/1:97:52,45:52:1863:45:1620:-108.567,0,-126.203	0/1:84:48,36:48:1720:36:1292:-64.9774,0,-117.507	0/1:68:46,22:46:1652:22:769:-31.8482,0,-103.529	0/1:137:114,23:114:4079:23:824:-12.9469,0,-299.521
chr05	29014910	.	A	G	7190.78	PASS	AB=0.226232;ABP=1680.63;AC=44;AF=0.236559;AN=186;AO=711;CIGAR=1X;DP=6313;DPB=6313;DPRA=1.58739;EPP=168.815;EPPR=11643.5;GTI=15;LEN=1;MEANALT=1;MQM=59.8326;MQMR=34.8317;NS=93;NUMALT=1;ODDS=2.11832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25229;QR=196945;RO=5602;RPL=711;RPP=1546.93;RPPR=9539.19;RPR=0;RUN=1;SAF=239;SAP=168.815;SAR=472;SRF=5342;SRP=10014.1;SRR=260;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:12,3:12:423:3:108:-5.55972,0,-26.2787	0/0:85:84,1:84:2961:1:36:0,-21.9893,-224.157	0/1:57:51,6:51:1790:6:212:-2.26609,0,-123.562	0/0:134:128,6:128:4507:6:216:0,-20.5475,-322.918	0/0:74:69,5:69:2443:5:176:0,-6.0912,-176.261	0/1:44:34,10:34:1194:10:348:-18.4098,0,-86.3055	0/1:58:47,11:47:1642:11:388:-17.7976,0,-102.943	0/0:94:88,6:88:3123:6:216:0,-8.50631,-224.057	0/0:48:46,2:46:1627:2:72:0,-9.89261,-117.07	0/0:42:41,1:41:1455:1:36:0,-9.04498,-105.701	0/1:26:15,11:15:522:11:396:-28.1382,0,-29.9357	0/1:67:29,38:29:1018:38:1360:-102.532,0,-55.2125	0/1:56:43,13:43:1509:13:464:-25.2398,0,-100.522	0/1:72:59,13:59:2070:13:464:-20.4233,0,-153.521	0/1:88:73,15:73:2568:15:540:-22.4459,0,-167.264	0/1:55:34,21:34:1196:21:756:-51.8106,0,-80.3526	0/1:33:25,8:25:887:8:276:-15.2413,0,-56.7372	0/1:46:40,6:40:1380:6:216:-5.94313,0,-101.865	0/1:18:11,7:11:392:7:248:-17.2457,0,-25.4437	0/0:165:163,2:163:5741:2:72:0,-42.8332,-426.86	0/0:93:90,3:90:3178:3:108:0,-17.9206,-248.125	0/0:53:52,1:52:1827:1:36:0,-12.3563,-138.691	0/1:38:30,8:30:1059:8:275:-13.6443,0,-64.6388	0/0:130:122,8:122:4241:8:280:0,-13.5946,-326.113	0/1:27:22,5:22:768:5:176:-8.05721,0,-50.1299	0/0:273:273,0:273:9586:0:0:0,-82.1812,-745.02	0/0:95:92,3:92:3240:3:108:0,-18.5227,-227.209	0/1:43:21,22:21:740:22:788:-58.3005,0,-40.6094	0/0:151:151,0:151:5346:0:0:0,-45.4555,-390.982	0/0:84:80,4:80:2816:4:144:0,-11.9729,-194.884	0/0:117:112,5:112:3967:5:180:0,-18.6684,-282.988	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.3836	0/1:6:5,1:5:164:1:36:-1.79209,0,-11.5019	0/1:4:3,1:3:99:1:36:-2.39415,0,-6.56997	0/1:4:3,1:3:104:1:36:-2.39415,0,-7.84018	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.58934	0/1:163:112,51:112:3913:51:1819:-114.923,0,-245.262	0/0:153:149,4:149:5230:4:140:0,-33.113,-389.909	0/1:70:59,11:59:2083:11:392:-14.548,0,-146.899	.:.:.:.:.:.:.:.	0/0:81:74,7:74:2603:7:252:0,-1.35447,-179.508	0/1:25:21,4:21:748:4:144:-5.78787,0,-49.3064	0/1:67:59,8:59:2103:8:288:-6.0984,0,-138.096	0/1:60:32,28:32:1136:28:1000:-72.2536,0,-65.9195	0/1:102:84,18:84:2955:18:637:-26.9283,0,-194.969	0/0:30:28,2:28:988:2:72:0,-2.19418,-64.0969	0/0:64:63,1:63:2208:1:36:0,-15.6676,-172.79	0/0:144:135,9:135:4722:9:315:0,-14.6611,-327.913	0/0:55:53,2:53:1875:2:68:0,-10.0989,-126.804	0/0:83:77,6:77:2700:6:208:0,-5.92641,-184.724	0/0:81:77,4:77:2731:4:140:0,-11.4389,-197.711	0/0:5:5,0:5:172:0:0:0,-1.50515,-13.9967	0/1:67:60,7:60:2109:7:248:-2.49518,0,-142.192	0/1:12:9,3:9:316:3:104:-6.09045,0,-20.7594	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.9926	0/0:79:77,2:77:2708:2:72:0,-16.9446,-215.135	0/0:30:29,1:29:1023:1:36:0,-5.43262,-76.5617	0/0:17:17,0:17:591:0:0:0,-5.11751,-44.5299	0/0:19:19,0:19:672:0:0:0,-5.71957,-48.3633	0/1:45:39,6:39:1392:6:208:-5.51273,0,-88.3899	0/1:156:137,19:137:4816:19:672:-12.9864,0,-305.939	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.82108	0/0:129:127,2:127:4420:2:72:0,-31.9961,-312.895	0/0:179:172,7:172:6037:7:252:0,-30.8554,-416.454	0/0:49:46,3:46:1613:3:104:0,-5.04766,-118.47	0/0:55:55,0:55:1929:0:0:0,-16.5566,-138.335	0/0:147:142,5:142:4997:5:172:0,-28.4334,-354.765	0/0:60:58,2:58:2047:2:68:0,-11.6041,-154.84	0/1:16:6,10:6:212:10:360:-27.9278,0,-12.315	0/0:31:29,2:29:1001:2:68:0,-2.87422,-69.1543	0/1:120:105,15:105:3654:15:536:-12.4512,0,-238.963	0/0:9:9,0:9:316:0:0:0,-2.70927,-24.0969	0/0:29:29,0:29:1024:0:0:0,-8.72987,-75.8163	0/1:38:34,4:34:1190:4:144:-1.87448,0,-86.917	0/1:83:63,20:63:2211:20:705:-38.7894,0,-137.703	0/0:59:57,2:57:1997:2:63:0,-11.7776,-137.095	0/0:77:75,2:75:2600:2:72:0,-16.3426,-193.085	0/0:57:57,0:57:2002:0:0:0,-17.1587,-150.282	0/0:7:7,0:7:248:0:0:0,-2.10721,-18.6864	0/0:87:84,3:84:2966:3:108:0,-16.1144,-207.804	0/0:66:62,4:62:2153:4:144:0,-6.55436,-165.134	0/0:119:113,6:113:3978:6:202:0,-17.3139,-277.089	0/1:131:108,23:108:3802:23:787:-31.7075,0,-242.826	0/1:28:21,7:21:747:7:244:-13.8706,0,-47.7487	0/0:85:80,5:80:2813:5:180:0,-9.03548,-193.821	0/1:98:82,16:82:2878:16:568:-21.9509,0,-188.297	0/1:63:55,8:55:1954:8:280:-6.57441,0,-137.607	0/1:60:41,19:41:1455:19:676:-43.1062,0,-91.3025	0/1:48:29,19:29:1015:19:676:-46.7186,0,-60.2141	0/1:8:6,2:6:212:2:72:-4.42848,0,-14.7266	0/1:80:68,12:68:2395:12:432:-15.1388,0,-173.464	0/1:105:91,14:91:3210:14:500:-13.728,0,-214.864	0/1:67:58,9:58:2026:9:315:-8.51822,0,-125.045	0/1:108:58,50:58:2034:50:1775:-127.521,0,-111.492
chr05	29054955	.	T	C	26666.8	PASS	AB=0.499673;ABP=3.01314;AC=50;AF=0.265957;AN=188;AO=1537;CIGAR=1X;DP=5412;DPB=5412;DPRA=1.32339;EPP=3118.55;EPPR=8156.74;GTI=0;LEN=1;MEANALT=1;MQM=58.9857;MQMR=59.8727;NS=94;NUMALT=1;ODDS=1.21034;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54944;QR=137824;RO=3874;RPL=1512;RPP=3126.95;RPPR=8165.29;RPR=25;RUN=1;SAF=1;SAP=3331.88;SAR=1536;SRF=1;SRP=8406.61;SRR=3873;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8552	0/1:80:30,50:30:1080:50:1784:-136.702,0,-73.3611	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.051	0/0:88:86,2:86:3068:2:72:0,-19.6539,-269.511	0/1:32:24,8:24:864:8:288:-16.6335,0,-68.4487	0/1:34:15,19:15:536:19:680:-51.2095,0,-38.3398	0/0:117:117,0:117:4121:0:0:0,-35.2205,-371.043	0/0:46:45,1:45:1596:1:36:0,-10.2501,-140.333	0/1:33:19,14:19:680:14:504:-35.7517,0,-51.5948	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.482	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.742	0/0:52:52,0:52:1836:0:0:0,-15.6536,-165.521	0/1:39:21,18:21:739:18:644:-46.4986,0,-55.0922	0/1:99:61,38:61:2188:38:1349:-91.8583,0,-167.384	0/1:40:21,19:21:756:19:684:-49.8385,0,-56.326	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/1:61:28,33:28:1000:33:1184:-88.4773,0,-71.9525	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.095	0/1:47:22,25:22:784:25:891:-66.3345,0,-55.9554	0/1:129:53,76:53:1862:76:2712:-205.337,0,-129.022	0/1:61:26,35:26:936:35:1256:-94.9357,0,-66.1966	0/1:52:18,34:18:648:34:1211:-93.5891,0,-42.9983	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:78:76,2:76:2668:2:72:0,-16.6436,-233.524	0/0:51:51,0:51:1794:0:0:0,-15.3525,-161.738	0/1:134:72,62:72:2564:62:2216:-159.314,0,-190.654	0/0:140:139,1:139:4919:1:36:0,-38.5459,-439.256	0/1:30:16,14:16:561:14:500:-36.3022,0,-41.7862	0/1:175:97,78:97:3439:78:2785:-197.928,0,-257.022	0/0:79:79,0:79:2806:0:0:0,-23.7814,-252.773	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.74	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9818	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:122:68,54:68:2448:54:1906:-135.019,0,-183.849	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.537	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.668	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:92:52,40:52:1856:40:1436:-101.825,0,-139.62	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:60:30,30:30:1072:30:1067:-78.2794,0,-78.7082	0/1:37:23,14:23:820:14:504:-34.5438,0,-62.9844	0/0:29:29,0:29:1014:0:0:0,-8.72987,-91.5675	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:42:28,14:28:1000:14:500:-32.6821,0,-77.6518	0/0:89:88,1:88:3125:1:36:0,-23.1934,-277.878	0/1:51:27,24:27:972:24:864:-62.6977,0,-72.4454	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.08	0/1:118:46,72:46:1648:72:2536:-192.925,0,-113.079	0/1:11:8,3:8:269:3:108:-6.76384,0,-21.2248	0/1:127:66,61:66:2334:61:2196:-159.552,0,-172.081	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:10:1,9:1:36:9:320:-26.1244,0,-0.587975	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/0:66:66,0:66:2326:0:0:0,-19.868,-209.597	0/1:148:71,77:71:2552:77:2768:-204.695,0,-185.348	0/1:4:2,2:2:72:2:72:-5.63014,0,-5.6326	0/0:69:69,0:69:2430:0:0:0,-20.7711,-218.953	0/1:88:36,52:36:1284:52:1868:-141.899,0,-89.3728	0/1:27:11,16:11:396:16:576:-44.0464,0,-27.8549	0/1:30:10,20:10:341:20:720:-56.0979,0,-21.9869	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.975	0/0:89:89,0:89:3153:0:0:0,-26.7917,-283.905	0/1:29:18,11:18:644:11:396:-27.2494,0,-49.5545	0/1:62:37,25:37:1294:25:900:-62.6367,0,-98.0922	0/1:72:45,27:45:1612:27:968:-65.7632,0,-123.696	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.626	0/1:114:57,57:57:2025:57:2048:-150.202,0,-147.923	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:106:106,0:106:3781:0:0:0,-31.9092,-340.483	0/1:72:42,30:42:1504:30:1072:-75.0026,0,-113.98	0/1:85:42,43:42:1493:43:1540:-113.203,0,-109.039	0/0:57:56,1:56:1989:1:36:0,-13.5614,-175.254	0/1:9:7,2:7:252:2:72:-4.12554,0,-20.3197	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:55:23,32:23:790:32:1129:-85.3372,0,-54.8549	0/1:64:33,31:33:1184:31:1116:-81.3568,0,-87.6024	0/1:69:37,32:37:1328:32:1144:-82.4648,0,-99.0512	0/1:25:11,14:11:388:14:504:-38.17,0,-27.7316	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.29	0/1:75:36,39:36:1292:39:1384:-102.149,0,-94.0065	0/1:26:16,10:16:557:10:360:-24.9094,0,-42.6288	0/0:75:74,1:74:2644:1:36:0,-18.9827,-234.611	0/1:49:25,24:25:900:24:841:-61.2376,0,-66.2522	0/0:33:32,0:32:1137:0:0:0,-9.63296,-102.277	0/1:163:66,97:66:2357:97:3480:-264.28,0,-163.297	0/1:43:15,28:15:517:28:997:-77.091,0,-33.9103	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.235
chr06	16858	.	C	G	178299	PASS	AB=0.503871;ABP=3.78358;AC=139;AF=0.739362;AN=188;AO=8674;CIGAR=1X;DP=11640;DPB=11640;DPRA=0;EPP=18838.4;EPPR=6428.4;GTI=0;LEN=1;MEANALT=1.06383;MQM=47.7524;MQMR=59.3342;NS=94;NUMALT=1;ODDS=9.19317;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309909;QR=105297;RO=2959;RPL=0;RPP=18838.4;RPPR=6428.4;RPR=8674;RUN=1;SAF=8674;SAP=18838.4;SAR=0;SRF=2959;SRP=6428.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:72:0,72:0:0:72:2568:-228.275,-21.6742,0	1/1:106:0,106:0:0:106:3766:-332.173,-31.9092,0	0/1:102:55,47:55:1955:47:1664:-115.816,0,-145.464	1/1:309:0,309:0:0:309:11062:-986.414,-93.0183,0	0/1:124:52,72:52:1868:72:2558:-190.435,0,-130.93	0/1:78:41,37:41:1464:37:1324:-94.0742,0,-108.496	0/1:134:65,69:65:2327:69:2471:-180.637,0,-169.252	0/1:50:28,22:28:982:22:783:-54.5533,0,-73.6402	0/1:123:78,44:78:2784:44:1580:-102.17,0,-213.464	0/1:69:27,42:27:955:42:1504:-112.391,0,-65.4754	0/1:156:86,70:86:3036:70:2504:-175.921,0,-226.455	1/1:107:0,107:0:0:107:3815:-335.528,-32.2102,0	0/1:92:53,39:53:1879:39:1400:-95.8957,0,-141.484	0/1:94:45,49:45:1616:49:1756:-128.588,0,-117.376	1/1:82:0,82:0:0:82:2919:-261.307,-24.6845,0	0/1:66:39,27:39:1370:27:968:-66.7797,0,-103.673	1/1:68:0,68:0:0:68:2423:-214.764,-20.47,0	0/1:71:43,28:43:1544:28:1004:-67.1198,0,-117.813	1/1:60:0,59:0:0:59:2112:-185.917,-17.7608,0	1/1:320:0,319:0:0:319:11372:-1011.89,-96.0286,0	1/1:145:0,145:0:0:145:5182:-459.112,-43.6494,0	1/1:121:0,121:0:0:121:4294:-384.001,-36.4246,0	0/1:110:48,62:48:1716:62:2224:-164.162,0,-121.557	0/1:138:64,74:64:2274:74:2633:-192.262,0,-163.106	1/1:108:0,108:0:0:108:3862:-342.9,-32.5112,0	0/1:401:225,176:225:8021:176:6299:-443.34,0,-600.454	0/1:216:81,135:81:2870:135:4793:-360.08,0,-193.445	1/1:41:0,41:0:0:41:1472:-131.264,-12.3422,0	0/1:350:135,215:135:4802:215:7677:-578.936,0,-326.294	1/1:154:2,152:2:72:152:5451:-476.901,-39.5219,0	1/1:209:0,207:0:0:207:7405:-659.21,-62.3132,0	0/1:22:10,12:10:356:12:432:-32.2849,0,-25.7586	1/1:34:0,34:0:0:34:1224:-108.819,-10.235,0	0/1:18:7,11:7:248:11:390:-27.4604,0,-17.2457	0/1:13:4,9:4:144:9:320:-24.8326,0,-9.34274	1/1:16:0,16:0:0:16:572:-50.2202,-4.81648,0	0/1:287:132,155:132:4687:155:5525:-407.74,0,-335.567	0/1:162:90,72:90:3207:72:2584:-179.133,0,-239.993	1/1:117:0,117:0:0:117:4177:-367.807,-35.2205,0	0/1:13:6,7:6:216:7:252:-18.9149,0,-15.8771	1/1:198:4,194:4:144:194:6952:-604.368,-46.2903,0	0/1:70:35,35:35:1260:35:1256:-91.2972,0,-92.6334	0/1:206:111,95:111:3958:95:3381:-238.798,0,-294.182	0/1:101:43,58:43:1527:58:2079:-154.881,0,-107.318	0/1:98:51,47:51:1832:47:1680:-120.711,0,-135.635	0/1:123:68,55:68:2410:55:1955:-137.323,0,-179.794	1/1:128:0,128:0:0:128:4566:-399.088,-38.5318,0	1/1:240:0,240:0:0:240:8573:-765.945,-72.2472,0	1/1:150:1,149:1:36:149:5317:-470.637,-41.5562,0	1/1:149:1,147:1:36:147:5237:-462.753,-41.2903,0	0/1:257:110,147:110:3939:147:5259:-393.483,0,-277.061	1/1:16:0,16:0:0:16:572:-51.5543,-4.81648,0	1/1:150:1,149:1:32:149:5297:-464.283,-41.9552,0	0/1:49:23,26:23:819:26:936:-69.5964,0,-59.1674	0/1:33:13,20:13:460:20:705:-52.4418,0,-31.6779	0/1:250:127,123:127:4533:123:4404:-317.433,0,-332.865	1/1:58:0,58:0:0:58:2066:-184.378,-17.4597,0	0/1:17:7,9:7:252:9:324:-24.2563,0,-17.8369	0/1:35:10,25:10:352:25:882:-68.8826,0,-21.482	1/1:112:0,112:0:0:112:4020:-357.26,-33.7154,0	0/1:161:75,86:75:2662:86:3076:-225.959,0,-191.239	0/1:5:4,1:4:135:1:36:-2.07362,0,-10.975	1/1:288:0,288:0:0:288:10275:-917.479,-86.6966,0	1/1:179:1,178:1:36:178:6351:-563.053,-50.2861,0	1/1:94:0,94:0:0:94:3351:-297.325,-28.2968,0	1/1:121:0,121:0:0:121:4348:-386.72,-36.4246,0	0/1:173:72,101:72:2538:101:3590:-266.494,0,-176.453	1/1:58:0,58:0:0:58:2076:-185.72,-17.4597,0	0/1:60:33,27:33:1172:27:972:-67.8305,0,-87.658	1/1:60:0,60:0:0:60:2143:-189.366,-18.0618,0	1/1:92:1,91:1:36:91:3256:-286.251,-24.0965,0	0/1:29:14,15:14:500:15:540:-39.9305,0,-36.6063	1/1:139:0,139:0:0:139:4988:-439.802,-41.8432,0	0/1:87:51,36:51:1828:36:1296:-87.8098,0,-138.465	0/1:213:103,110:103:3662:110:3910:-283.459,0,-265.636	0/1:207:103,104:103:3662:104:3716:-269.75,0,-267.185	1/1:169:0,169:0:0:169:6029:-534.239,-50.8741,0	1/1:115:0,115:0:0:115:4115:-362.621,-34.6185,0	0/1:21:14,7:14:483:7:252:-15.9909,0,-37.4757	1/1:159:0,159:0:0:159:5701:-507.532,-47.8638,0	1/1:111:0,111:0:0:111:3966:-350.678,-33.4143,0	0/1:292:138,154:138:4918:154:5484:-401.691,0,-354.495	1/1:124:1,123:1:36:123:4404:-388.208,-33.7294,0	1/1:99:0,99:0:0:99:3548:-316.33,-29.802,0	0/1:112:60,52:60:2114:52:1847:-131.901,0,-156.76	1/1:168:0,168:0:0:168:6016:-536.922,-50.573,0	0/1:58:27,31:27:959:31:1112:-80.9179,0,-69.1657	1/1:100:0,100:0:0:100:3579:-317.259,-30.103,0	0/1:95:54,41:54:1924:41:1463:-100.929,0,-144.532	1/1:87:0,87:0:0:87:3116:-276.634,-26.1896,0	0/1:204:119,85:119:4218:85:3048:-209.677,0,-317.822	0/1:97:67,30:67:2395:30:1080:-67.8159,0,-186.108	1/1:136:1,135:1:36:135:4828:-425.762,-37.3418,0	1/1:129:0,129:0:0:129:4615:-411.963,-38.8329,0
chr06	28243	.	C	T	105013	PASS	AB=0.466194;ABP=39.4209;AC=140;AF=0.744681;AN=188;AO=5055;CIGAR=1X;DP=7036;DPB=7036;DPRA=18.9032;EPP=10979.8;EPPR=4293.84;GTI=3;LEN=1;MEANALT=1.05376;MQM=59.9707;MQMR=59.999;NS=94;NUMALT=1;ODDS=0.887814;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180705;QR=70773;RO=1976;RPL=0;RPP=10979.8;RPPR=4293.84;RPR=5055;RUN=1;SAF=5055;SAP=10979.8;SAR=0;SRF=1976;SRP=4293.84;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:152:0,151:0:0:151:5375:-483.652,-45.4555,0	0/1:94:54,40:54:1932:40:1440:-101.601,0,-145.86	1/1:155:0,155:0:0:155:5548:-499.44,-46.6597,0	0/1:56:29,27:29:1044:27:972:-70.9402,0,-77.4171	0/1:56:33,23:33:1172:23:824:-57.6256,0,-88.9298	0/1:97:46,51:46:1648:51:1832:-135.961,0,-119.409	0/1:145:76,69:76:2724:69:2468:-178.725,0,-201.754	0/1:40:15,25:15:532:25:892:-68.5585,0,-36.1719	0/1:87:51,36:51:1828:36:1296:-90.7543,0,-138.611	0/1:24:11,13:11:392:13:468:-35.2349,0,-28.3953	1/1:76:0,76:0:0:76:2728:-245.759,-22.8783,0	0/1:52:24,28:24:864:28:1004:-75.0223,0,-62.429	0/1:43:18,25:18:644:25:896:-68.0161,0,-45.3463	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:29:14,15:14:504:15:525:-38.8482,0,-36.9682	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:41:24,17:24:864:17:604:-42.3484,0,-65.7403	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:99:0,99:0:0:99:3529:-317.818,-29.802,0	1/1:104:0,104:0:0:104:3698:-333.021,-31.3071,0	1/1:109:4,105:4:144:105:3756:-324.927,-19.4987,0	0/1:85:47,38:47:1676:38:1349:-96.1207,0,-125.54	0/1:121:56,65:56:2008:65:2306:-171.373,0,-144.569	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:304:150,154:150:5353:154:5497:-403.344,0,-390.39	0/1:196:120,76:120:4296:76:2720:-186.041,0,-327.815	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:162:94,68:94:3360:68:2436:-170.728,0,-253.85	1/1:98:1,97:1:36:97:3457:-307.744,-25.9027,0	1/1:136:0,136:0:0:136:4823:-434.2,-40.9401,0	0/1:18:4,14:4:144:14:504:-40.2796,0,-7.89508	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:173:84,89:84:3008:89:3200:-236.144,0,-218.873	0/1:152:78,74:78:2804:74:2622:-190.469,0,-206.843	1/1:40:0,40:0:0:40:1436:-129.537,-12.0412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:120:0,120:0:0:120:4300:-387.177,-36.1236,0	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/1:140:74,66:74:2644:66:2353:-169.883,0,-196.063	0/1:68:31,37:31:1116:37:1305:-97.2794,0,-80.2817	0/1:40:15,25:15:532:25:885:-67.9253,0,-36.1719	0/1:95:64,31:64:2292:31:1112:-71.7935,0,-177.943	1/1:101:0,101:0:0:101:3598:-324.028,-30.404,0	1/1:111:0,111:0:0:111:3984:-358.749,-33.4143,0	1/1:85:0,85:0:0:85:3013:-271.401,-25.5876,0	1/1:99:0,99:0:0:99:3552:-319.884,-29.802,0	0/1:184:110,74:110:3948:74:2643:-182.726,0,-300.121	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	0/1:31:19,12:19:684:12:432:-29.8893,0,-52.5584	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/1:88:55,33:55:1956:33:1180:-80.0174,0,-149.825	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:23:15,8:15:540:8:288:-19.3437,0,-42.0128	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:104:35,68:35:1252:68:2444:-188.849,0,-81.6192	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:140:1,139:1:36:139:4983:-445.019,-38.5459,0	1/1:192:3,189:3:108:189:6766:-598.935,-47.7226,0	1/1:48:0,48:0:0:48:1696:-152.922,-14.4494,0	1/1:64:0,64:0:0:64:2285:-205.892,-19.2659,0	0/1:180:114,66:114:4104:66:2364:-158.833,0,-315.357	1/1:111:2,108:2:72:108:3842:-339.151,-26.6098,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:57:0,57:0:0:57:2044:-184.231,-17.1587,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:94:0,93:0:0:93:3321:-298.711,-27.9958,0	0/1:36:14,22:14:504:22:784:-60.0468,0,-34.861	0/1:86:51,35:51:1828:35:1260:-87.8123,0,-138.912	0/1:113:75,38:75:2692:38:1368:-89.4044,0,-208.508	1/1:68:0,68:0:0:68:2425:-218.496,-20.47,0	1/1:72:1,71:1:36:71:2544:-225.612,-18.0759,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:60:3,57:3:108:57:2052:-174.876,-7.98663,0	1/1:53:0,53:0:0:53:1862:-167.855,-15.9546,0	0/1:186:99,86:99:3544:86:3061:-219.666,0,-263.118	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	0/1:54:24,30:24:860:30:1076:-80.8972,0,-61.4662	1/1:118:0,118:0:0:118:4228:-380.7,-35.5215,0	0/1:47:21,26:21:752:26:924:-69.3292,0,-53.8578	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:63:26,37:26:928:37:1316:-99.7769,0,-64.8734	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:29:16,13:16:572:13:464:-33.3676,0,-43.0836	0/1:53:35,18:35:1252:18:644:-42.336,0,-97.0305	1/1:59:0,59:0:0:59:2114:-190.528,-17.7608,0	1/1:75:1,74:1:36:74:2664:-236.407,-18.979,0
chr06	28281	.	A	G	33551.5	PASS	AB=0.527322;ABP=27.0976;AC=48;AF=0.255319;AN=188;AO=1980;CIGAR=1X;DP=7110;DPB=7110;DPRA=1.29989;EPP=4285.17;EPPR=10808.5;GTI=3;LEN=1;MEANALT=1.05263;MQM=59.999;MQMR=59.9575;NS=94;NUMALT=1;ODDS=0.43354;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70560;QR=183629;RO=5127;RPL=1978;RPP=4285.17;RPPR=10808.5;RPR=2;RUN=1;SAF=1980;SAP=4302.53;SAR=0;SRF=5127;SRP=11136.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:153:153,0:153:5481:0:0:0,-46.0576,-493.307	0/1:96:45,51:45:1620:51:1832:-136.262,0,-117.191	0/0:158:158,0:158:5657:0:0:0,-47.5627,-509.243	0/1:58:29,29:29:1044:29:1044:-76.8151,0,-76.8151	0/1:58:24,34:24:856:34:1201:-90.9339,0,-59.9014	0/1:98:53,45:53:1908:45:1590:-113.885,0,-142.497	0/1:145:70,75:70:2512:75:2679:-197.705,0,-182.683	0/1:37:23,14:23:828:14:492:-33.4737,0,-63.706	0/1:87:36,51:36:1292:51:1817:-137.62,0,-90.3942	0/1:24:13,11:13:464:11:396:-28.758,0,-34.8728	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:52:28,24:28:1008:24:844:-60.6232,0,-75.3828	0/1:41:24,17:24:864:17:608:-42.7098,0,-65.7403	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:28:14,14:14:500:14:504:-37.2693,0,-36.9073	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:43:18,25:18:648:25:896:-68.0161,0,-45.7076	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:100:100,0:100:3558:0:0:0,-30.103,-320.426	0/0:104:104,0:104:3725:0:0:0,-31.3071,-335.449	0/0:116:112,4:112:3969:4:144:0,-21.6059,-344.084	0/1:86:40,46:40:1432:46:1623:-120.468,0,-103.289	0/1:123:66,57:66:2349:57:2040:-146.845,0,-174.641	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:308:158,150:158:5650:150:5333:-387.383,0,-415.902	0/1:197:78,118:78:2792:118:4208:-319.538,0,-192.146	0/0:36:35,1:35:1260:1:36:0,-7.2388,-110.107	0/1:168:74,93:74:2656:93:3282:-244.965,0,-188.654	0/0:96:95,1:95:3397:1:36:0,-25.3006,-302.345	0/0:133:133,0:133:4733:0:0:0,-40.037,-426.103	0/1:18:14,4:14:500:4:144:-7.89508,0,-39.9176	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:173:91,82:91:3253:82:2939:-212.665,0,-240.911	0/1:154:76,77:76:2736:77:2762:-202.404,0,-200.064	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.897	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.657	0/1:25:12,13:12:428:13:453:-33.5739,0,-31.3331	0/1:141:68,73:68:2429:73:2612:-192.883,0,-176.419	0/1:69:37,32:37:1328:32:1148:-82.8588,0,-99.0512	0/1:41:25,16:25:900:16:567:-39.0185,0,-68.9788	0/1:100:32,68:32:1148:68:2435:-189.301,0,-73.5268	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:110:110,0:110:3933:0:0:0,-33.1133,-354.161	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082	0/0:101:101,0:101:3613:0:0:0,-30.404,-325.372	0/1:185:73,112:73:2620:112:4012:-305.578,0,-180.356	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/1:34:14,20:14:504:20:705:-53.5378,0,-35.4631	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:91:35,56:35:1247:56:2008:-153.6,0,-85.1403	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:23:8,15:8:288:15:540:-42.0128,0,-19.3437	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:106:70,36:70:2504:36:1275:-83.1431,0,-193.703	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:141:140,1:140:5036:1:21:0,-40.3453,-450.507	0/0:198:195,3:195:6986:3:108:0,-49.5288,-618.724	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.087	0/1:184:68,116:68:2425:116:4122:-315.774,0,-163.092	0/0:119:118,1:118:4240:1:36:0,-32.2243,-378.18	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.39	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/0:93:92,1:92:3312:1:36:0,-24.3975,-294.621	0/1:35:21,14:21:741:14:504:-35.162,0,-56.4755	0/1:85:35,50:35:1237:50:1755:-132.641,0,-86.0401	0/1:110:36,74:36:1292:74:2655:-206.082,0,-83.4705	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.45	0/0:70:69,1:69:2476:1:36:0,-17.4738,-219.495	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:61:58,3:58:2065:3:108:0,-8.28766,-176.044	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.275	0/1:190:92,98:92:3270:98:3466:-254.956,0,-237.32	0/0:93:92,1:92:3308:1:36:0,-24.3975,-294.339	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:57:33,24:33:1188:24:860:-60.5631,0,-90.0699	0/0:120:120,0:120:4289:0:0:0,-36.1236,-386.186	0/1:46:24,22:24:856:22:784:-57.0365,0,-63.5137	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:65:38,27:38:1360:27:968:-67.8704,0,-103.134	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:29:13,16:13:460:16:572:-43.0836,0,-32.9973	0/1:56:18,38:18:648:38:1356:-105.483,0,-41.7942	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959
chr06	28288	.	A	G	107323	PASS	AB=0.475446;ABP=22.0984;AC=140;AF=0.744681;AN=188;AO=5107;CIGAR=1X;DP=7042;DPB=7042;DPRA=18.9194;EPP=10773.7;EPPR=4165.76;GTI=2;LEN=1;MEANALT=1.06452;MQM=59.9559;MQMR=59.9943;NS=94;NUMALT=1;ODDS=0.412816;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181562;QR=68847;RO=1929;RPL=5070;RPP=10773.7;RPPR=4165.76;RPR=37;RUN=1;SAF=5107;SAP=11092.7;SAR=0;SRF=1929;SRP=4191.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:150:0,150:0:0:150:5353:-481.695,-45.1545,0	0/1:98:52,45:52:1838:45:1599:-114.64,0,-136.137	1/1:158:0,158:0:0:158:5641:-507.808,-47.5627,0	0/1:58:28,30:28:1004:30:1080:-80.0535,0,-73.2161	0/1:55:34,21:34:1203:21:756:-51.8106,0,-92.0184	0/1:97:45,52:45:1616:52:1864:-138.84,0,-116.53	0/1:143:72,71:72:2576:71:2516:-183.643,0,-189.042	0/1:39:15,24:15:540:24:860:-65.9817,0,-37.1964	0/1:86:49,37:49:1752:37:1299:-91.1604,0,-132.076	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	1/1:77:0,77:0:0:77:2742:-247.014,-23.1793,0	0/1:52:24,28:24:856:28:985:-73.308,0,-61.7075	0/1:42:17,25:17:608:25:859:-64.9775,0,-42.4088	1/1:51:0,51:0:0:51:1784:-160.837,-15.3525,0	0/1:27:13,14:13:464:14:500:-37.2084,0,-33.9697	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	0/1:39:24,15:24:856:15:524:-35.7495,0,-65.6209	1/1:34:0,34:0:0:34:1207:-108.935,-10.235,0	1/1:101:0,101:0:0:101:3592:-323.487,-30.404,0	1/1:105:0,105:0:0:105:3712:-334.283,-31.6082,0	1/1:113:4,109:4:140:109:3878:-336.268,-21.0718,0	0/1:82:43,39:43:1509:39:1400:-101.615,0,-111.417	0/1:117:51,66:51:1828:66:2346:-176.178,0,-129.58	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	0/1:297:145,152:145:5196:152:5406:-397.265,0,-378.373	0/1:197:117,80:117:4177:80:2855:-197.88,0,-316.808	1/1:36:0,36:0:0:36:1275:-115.052,-10.8371,0	0/1:161:92,69:92:3292:69:2476:-174.628,0,-248.034	1/1:97:1,95:1:36:95:3392:-301.898,-25.6604,0	1/1:138:0,137:0:0:137:4877:-438.699,-41.2411,0	0/1:18:4,14:4:144:14:500:-39.9176,0,-7.89508	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:171:80,91:80:2849:91:3229:-239.355,0,-205.171	0/1:155:76,79:76:2711:79:2796:-205.221,0,-197.574	1/1:41:0,41:0:0:41:1446:-130.433,-12.3422,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:120:0,120:0:0:120:4258:-383.399,-36.1236,0	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/1:135:70,65:70:2504:65:2317:-168.151,0,-184.974	0/1:68:32,36:32:1132:36:1287:-95.6628,0,-81.7185	0/1:39:15,24:15:528:24:860:-65.9817,0,-36.1112	0/1:97:65,32:65:2308:32:1152:-74.7902,0,-178.778	1/1:105:0,105:0:0:105:3744:-337.161,-31.6082,0	1/1:111:0,110:0:0:110:3935:-353.982,-33.1133,0	1/1:84:0,84:0:0:84:2987:-269.063,-25.2865,0	1/1:102:0,102:0:0:102:3626:-326.544,-30.7051,0	0/1:181:110,71:110:3928:71:2496:-170.406,0,-299.227	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:101:0,101:0:0:101:3607:-324.836,-30.404,0	0/1:33:19,14:19:676:14:491:-34.5871,0,-51.234	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:91:56,35:56:2012:35:1252:-85.5913,0,-153.959	1/1:33:0,33:0:0:33:1160:-104.707,-9.93399,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:23:15,8:15:540:8:288:-19.3437,0,-42.0128	1/1:31:0,31:0:0:31:1091:-98.4987,-9.33193,0	0/1:104:34,70:34:1211:70:2454:-189.807,0,-77.9884	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:139:1,138:1:36:138:4927:-439.493,-38.2449,0	1/1:194:3,191:3:104:191:6784:-600.931,-48.697,0	1/1:49:0,49:0:0:49:1738:-156.698,-14.7505,0	1/1:63:0,62:0:0:62:2216:-199.326,-18.6639,0	0/1:181:115,66:115:4120:66:2345:-156.818,0,-316.498	1/1:119:1,118:1:36:118:4229:-377.191,-32.2243,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:64:0,63:0:0:63:2215:-199.253,-18.9649,0	1/1:58:0,58:0:0:58:2067:-186.299,-17.4597,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	1/1:90:0,90:0:0:90:3215:-289.535,-27.0927,0	0/1:34:14,20:14:492:20:709:-53.8997,0,-34.3773	0/1:80:45,35:45:1604:35:1243:-88.0869,0,-120.568	0/1:113:75,38:75:2688:38:1359:-88.5934,0,-208.138	1/1:72:0,72:0:0:72:2561:-230.731,-21.6742,0	1/1:73:1,72:1:36:72:2576:-228.491,-18.3769,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:59:3,56:3:108:56:1980:-168.399,-7.6856,0	1/1:50:0,50:0:0:50:1781:-160.571,-15.0515,0	0/1:193:101,92:101:3609:92:3266:-236.06,0,-266.916	1/1:95:0,95:0:0:95:3386:-304.956,-28.5979,0	1/1:23:0,23:0:0:23:791:-71.5032,-6.92369,0	0/1:54:24,30:24:864:30:1072:-80.5368,0,-61.8269	1/1:116:0,116:0:0:116:4075:-366.938,-34.9195,0	0/1:48:21,27:21:731:27:955:-71.8154,0,-51.661	1/1:51:0,51:0:0:51:1808:-163.002,-15.3525,0	0/1:62:25,37:25:896:37:1305:-99.0855,0,-62.2965	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:28:15,13:15:536:13:451:-32.491,0,-40.146	0/1:51:35,16:35:1225:16:561:-35.4655,0,-95.1992	1/1:59:0,59:0:0:59:2111:-190.258,-17.7608,0	1/1:77:0,77:0:0:77:2715:-244.593,-23.1793,0
chr06	93499	.	A	G	30909.8	PASS	AB=0.51815;ABP=12.7845;AC=48;AF=0.255319;AN=188;AO=1782;CIGAR=1X;DP=6816;DPB=6816;DPRA=1.01845;EPP=3709.3;EPPR=10294.4;GTI=1;LEN=1;MEANALT=1.05556;MQM=59.9916;MQMR=59.9887;NS=94;NUMALT=1;ODDS=2.50426;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63624;QR=179682;RO=5031;RPL=19;RPP=3709.3;RPPR=10302.8;RPR=1763;RUN=1;SAF=1782;SAP=3872.57;SAR=0;SRF=5030;SRP=10919;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:77:43,34:43:1525:34:1220:-86.9275,0,-114.362	0/0:145:145,0:145:5181:0:0:0,-43.6493,-466.429	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:28:9,19:9:320:19:675:-52.6481,0,-20.7135	0/1:71:21,50:21:748:50:1776:-138.75,0,-46.2722	0/1:104:41,63:41:1453:63:2248:-171.273,0,-99.7568	0/1:129:66,63:66:2372:63:2241:-163.119,0,-174.587	0/1:90:50,40:50:1791:40:1424:-101.365,0,-134.379	0/1:40:17,23:17:608:23:815:-61.6296,0,-43.0108	0/0:102:102,0:102:3640:0:0:0,-30.7051,-327.806	0/1:79:45,34:45:1612:34:1216:-85.9652,0,-121.589	0/1:26:10,16:10:360:16:572:-43.9866,0,-24.9175	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:48:25,23:25:892:23:816:-59.3104,0,-66.1502	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.319	0/0:182:182,0:182:6516:0:0:0,-54.7875,-586.524	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.714	0/1:59:25,34:25:873:34:1224:-92.7063,0,-61.1238	0/1:69:33,36:33:1188:36:1292:-95.8127,0,-86.4575	0/0:109:109,0:109:3903:0:0:0,-32.8123,-351.458	0/1:138:74,64:74:2614:64:2289:-164.729,0,-193.964	0/1:238:125,112:125:4468:112:4003:-288.756,0,-330.587	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/1:239:112,127:112:3993:127:4543:-337.09,0,-287.613	0/0:50:48,2:48:1728:2:72:0,-8.2152,-148.969	0/0:111:111,0:111:3956:0:0:0,-33.4143,-356.233	0/1:10:3,7:3:108:7:243:-19.1972,0,-7.06487	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:179:94,85:94:3364:85:3040:-219.946,0,-249.092	0/1:112:52,60:52:1860:60:2144:-159.512,0,-133.964	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.889	0/1:15:5,10:5:172:10:360:-28.2289,0,-11.3025	0/1:72:27,45:27:972:45:1607:-123.245,0,-66.1237	0/1:45:21,24:21:747:24:864:-64.5362,0,-54.008	0/1:43:28,15:28:1000:15:527:-34.8159,0,-77.3711	0/1:105:48,56:48:1712:56:2016:-150.046,0,-122.699	0/0:86:86,0:86:3065:0:0:0,-25.8886,-276.078	0/0:134:134,0:134:4781:0:0:0,-40.338,-430.447	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.882	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:162:72,90:72:2576:90:3212:-240.537,0,-183.323	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:96:96,0:96:3441:0:0:0,-28.8989,-309.901	0/1:42:21,21:21:752:21:756:-55.724,0,-55.363	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:116:54,62:54:1931:62:2198:-163.165,0,-139.146	0/0:100:99,1:99:3528:1:36:0,-26.5047,-314.133	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	0/0:43:43,0:43:1520:0:0:0,-12.9443,-137.09	0/1:97:46,51:46:1633:51:1806:-133.62,0,-118.057	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:151:151,0:151:5354:0:0:0,-45.4555,-481.995	0/0:157:157,0:157:5593:0:0:0,-47.2617,-503.494	0/0:39:37,2:37:1316:2:63:0,-5.75701,-112.759	0/0:55:55,0:55:1952:0:0:0,-16.5566,-175.956	0/1:139:74,65:74:2648:65:2316:-166.858,0,-196.723	0/0:114:111,3:111:3992:3:108:0,-24.2422,-349.393	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/0:93:92,1:92:3293:1:36:0,-24.3975,-292.989	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.976	0/1:16:11,5:11:392:5:176:-11.3685,0,-30.8036	0/0:122:122,0:122:4371:0:0:0,-36.7257,-393.563	0/1:73:39,34:39:1384:34:1216:-87.7714,0,-102.884	0/1:118:53,65:53:1904:65:2332:-174.618,0,-136.116	0/1:73:37,36:37:1324:36:1290:-94.4282,0,-97.4869	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/0:69:68,1:68:2409:1:36:0,-17.1728,-213.467	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:64:63,1:63:2260:1:36:0,-15.6676,-200.064	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/1:220:120,99:120:4273:99:3525:-251.213,0,-318.503	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.316	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:30:11,19:11:396:19:680:-52.4983,0,-26.9518	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/1:35:17,18:17:608:18:640:-47.3933,0,-44.516	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:51:16,35:16:568:35:1247:-97.1815,0,-36.0993	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:64:25,39:25:896:39:1384:-105.593,0,-61.6944	0/1:62:18,44:18:636:44:1576:-123.468,0,-38.9042	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:91:91,0:91:3241:0:0:0,-27.3937,-291.911
chr06	183227	.	C	T	183873	PASS	AB=0.480855;ABP=22.2167;AC=136;AF=0.731183;AN=186;AO=8815;CIGAR=1X;DP=11977;DPB=11977;DPRA=65.7857;EPP=19144.5;EPPR=6864.86;GTI=0;LEN=1;MEANALT=1.02198;MQM=51.0523;MQMR=59.8924;NS=93;NUMALT=1;ODDS=0.749764;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=315812;QR=112825;RO=3160;RPL=8815;RPP=19144.5;RPPR=6864.86;RPR=0;RUN=1;SAF=8815;SAP=19144.5;SAR=0;SRF=3160;SRP=6864.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1144:-103.022,-9.63296,0	1/1:204:0,204:0:0:204:7324:-657.017,-61.4101,0	0/1:224:101,123:101:3613:123:4415:-328.675,0,-257.941	1/1:231:0,231:0:0:231:8258:-739.24,-69.5379,0	0/1:109:58,51:58:2076:51:1836:-131.745,0,-154.297	0/1:101:53,48:53:1904:48:1716:-123.853,0,-141.233	0/1:220:133,87:133:4739:87:3115:-212.946,0,-360.439	0/1:213:103,110:103:3649:110:3956:-290.957,0,-264.493	0/1:89:51,38:51:1828:38:1364:-95.7883,0,-138.009	0/1:136:75,61:75:2696:61:2188:-155.463,0,-201.943	0/1:84:37,47:37:1328:47:1684:-125.424,0,-94.5345	1/1:86:0,86:0:0:86:3088:-276.868,-25.8886,0	0/1:70:40,30:40:1436:30:1080:-76.0366,0,-108.465	0/1:116:58,58:58:2064:58:2073:-151.101,0,-150.408	1/1:73:0,73:0:0:73:2604:-233.502,-21.9752,0	0/1:75:31,44:31:1116:44:1584:-119.594,0,-78.1736	1/1:92:0,92:0:0:92:3300:-296.342,-27.6948,0	0/1:60:32,28:32:1140:28:995:-71.577,0,-84.8474	1/1:45:0,45:0:0:45:1620:-145.554,-13.5464,0	1/1:279:0,279:0:0:279:10015:-895.568,-83.9874,0	1/1:101:0,101:0:0:101:3632:-325.427,-30.404,0	1/1:258:0,258:0:0:258:9268:-830.298,-77.6657,0	0/1:38:18,20:18:648:20:720:-53.4482,0,-47.2127	0/1:117:51,66:51:1817:66:2349:-175.721,0,-128.588	1/1:82:0,82:0:0:82:2936:-263.252,-24.6845,0	0/1:503:267,236:267:9528:236:8463:-607.562,0,-706.02	0/1:318:173,145:173:6202:145:5208:-371.659,0,-462.544	1/1:36:0,36:0:0:36:1288:-115.657,-10.8371,0	0/1:520:277,243:277:9930:243:8724:-625.848,0,-737.005	1/1:229:8,221:8:288:221:7911:-681.614,-42.6792,0	1/1:144:1,143:1:36:143:5120:-455.517,-39.75,0	.:.:.:.:.:.:.:.	1/1:17:0,17:0:0:17:608:-54.7762,-5.11751,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:6,1:6:216:1:36:-1.48202,0,-17.6833	1/1:18:0,18:0:0:18:648:-58.5122,-5.41854,0	0/1:203:112,91:112:3987:91:3259:-230.741,0,-297.895	0/1:351:190,161:190:6762:161:5744:-409.033,0,-502.972	1/1:94:0,94:0:0:94:3384:-302.644,-28.2968,0	0/1:4:3,1:3:104:1:36:-2.38236,0,-8.49869	1/1:317:8,309:8:288:309:11082:-966.545,-69.1591,0	0/1:43:22,21:22:788:21:756:-55.2116,0,-58.3005	0/1:165:81,84:81:2884:84:3004:-218.93,0,-210.123	0/1:43:16,27:16:572:27:972:-74.2826,0,-38.8691	0/1:66:32,33:32:1143:33:1188:-86.8843,0,-83.2506	0/1:105:55,50:55:1968:50:1796:-129.893,0,-145.787	1/1:158:0,158:0:0:158:5649:-505.876,-47.5627,0	1/1:171:0,171:0:0:171:6131:-548.901,-51.4761,0	1/1:128:0,128:0:0:128:4596:-411.277,-38.5318,0	1/1:106:1,105:1:36:105:3776:-334.136,-28.3109,0	0/1:237:108,129:108:3830:129:4644:-345.098,0,-273.528	1/1:17:0,17:0:0:17:612:-55.1821,-5.11751,0	1/1:355:0,355:0:0:355:12717:-1138.81,-106.866,0	0/1:79:43,36:43:1531:36:1296:-92.8535,0,-114.092	0/1:15:6,9:6:212:9:320:-24.569,0,-14.9089	0/1:134:71,63:71:2541:63:2268:-162.96,0,-188.601	1/1:21:0,21:0:0:21:756:-67.9593,-6.32163,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:38:19,19:19:671:19:684:-50.0803,0,-49.2767	1/1:105:1,104:1:36:104:3706:-328.919,-28.0099,0	0/1:178:88,90:88:3141:90:3182:-231.688,0,-229.331	0/1:4:3,1:3:108:1:36:-2.37893,0,-8.87105	1/1:285:0,285:0:0:285:10209:-915.851,-85.7936,0	1/1:162:0,162:0:0:162:5795:-519.548,-48.7669,0	1/1:97:0,97:0:0:97:3465:-310.539,-29.1999,0	1/1:87:0,87:0:0:87:3109:-278.912,-26.1896,0	0/1:180:103,77:103:3663:77:2764:-193.593,0,-275.63	1/1:214:1,213:1:36:213:7641:-679.462,-60.8226,0	0/1:27:10,17:10:352:17:608:-46.749,0,-23.89	1/1:73:1,72:1:36:72:2588:-229.011,-18.3769,0	1/1:118:0,118:0:0:118:4235:-379.929,-35.5215,0	0/1:39:25,14:25:900:14:500:-33.2004,0,-69.5808	1/1:168:0,168:0:0:168:5997:-538.281,-50.573,0	0/1:93:51,42:51:1819:42:1480:-105.2,0,-135.994	0/1:162:85,76:85:3022:76:2732:-196.252,0,-223.511	0/1:223:97,126:97:3488:126:4503:-335.903,0,-246.999	1/1:217:0,217:0:0:217:7756:-695.275,-65.3235,0	1/1:128:0,128:0:0:128:4563:-409.207,-38.5318,0	0/1:7:6,1:6:216:1:36:-1.48202,0,-17.6833	1/1:183:2,181:2:72:181:6474:-573.949,-48.2518,0	1/1:117:0,117:0:0:117:4192:-376.567,-35.2205,0	0/1:227:116,111:116:4137:111:3992:-289.719,0,-304.178	1/1:114:0,114:0:0:114:4096:-366.979,-34.3174,0	1/1:66:0,66:0:0:66:2353:-210.908,-19.868,0	0/1:54:26,28:26:913:28:1004:-73.0347,0,-66.2284	1/1:130:2,128:2:72:128:4571:-402.667,-32.2972,0	0/1:46:26,20:26:928:20:716:-50.579,0,-69.9905	1/1:73:0,73:0:0:73:2612:-234.397,-21.9752,0	0/1:83:52,31:52:1855:31:1116:-75.3374,0,-142.243	1/1:57:0,57:0:0:57:2052:-184.365,-17.1587,0	0/1:142:61,81:61:2180:81:2896:-216.475,0,-153.719	0/1:85:59,26:59:2100:26:917:-56.9374,0,-163.681	1/1:164:0,164:0:0:164:5855:-524.71,-49.3689,0	1/1:88:1,87:1:36:87:3121:-275.794,-22.8924,0
chr06	183287	.	TAAAAATTAC	TAAAAGTTAC,TAAAAAATTAC	229964	PASS	AB=0.528287,0.463303;ABP=39.3742,64.21;AC=141,47;AF=0.75,0.25;AN=188;AO=8251,2444;CIGAR=5M1X4M,1M1I9M;DP=10778;DPB=11023.6;DPRA=0,1.12748;EPP=17772.5,5275.4;EPPR=13.8677;GTI=3;LEN=1,1;MEANALT=2.35106,2.77193;MQM=59.9995,59.9971;MQMR=60;NS=94;NUMALT=2;ODDS=0.258375;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=294860,85308;QR=166;RO=5;RPL=18,4;RPP=17763.8,5275.4;RPPR=13.8677;RPR=8233,2440;RUN=1,1;SAF=1,0;SAP=17911.1,5310.09;SAR=8250,2444;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,ins	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52,0:0:0:52,0:1868,0:-168.399,-15.6536,0,-168.399,-15.6536,-168.399	1/1:187:0,186,0:0:0:186,0:6660,0:-599.118,-55.9916,0,-599.118,-55.9916,-599.118	1/2:177:1,104,71:1:31:104,71:3705,2483:-501.221,-199.529,-170.71,-299.521,0,-280.636	1/1:259:0,258,0:0:0:258,0:9221,0:-829.52,-77.6657,0,-829.52,-77.6657,-829.52	1/2:143:0,74,68:0:0:74,68:2648,2392:-410.685,-194.749,-172.472,-215.97,0,-195.5	1/2:148:0,90,58:0:0:90,58:3211,2021:-426.47,-164.702,-137.609,-262.12,0,-244.66	1/2:117:0,66,48:0:0:66,48:2329,1675:-325.962,-136.309,-116.441,-189.724,0,-175.275	1/2:143:0,86,57:0:0:86,57:3060,1935:-406.654,-157.261,-131.372,-249.739,0,-232.58	1/2:120:0,62,58:0:0:62,58:2205,2022:-344.488,-164.79,-146.126,-180.05,0,-162.59	1/2:78:0,39,38:0:0:39,38:1400,1336:-222.945,-108.741,-97.001,-114.199,0,-102.76	1/2:52:0,29,23:0:0:29,23:1044,816:-152.026,-66.838,-58.1082,-85.5449,0,-78.6212	1/1:94:0,94,0:0:0:94,0:3368,0:-303.336,-28.2968,0,-303.336,-28.2968,-303.336	1/2:58:0,26,32:0:0:26,32:932,1135:-168.841,-92.8251,-84.9983,-76.3721,0,-66.7391	1/2:95:0,48,46:0:0:48,46:1715,1585:-268.624,-128.789,-114.34,-139.884,0,-126.037	1/1:73:0,73,0:0:0:73,0:2609,0:-235.056,-21.9752,0,-235.056,-21.9752,-235.056	1/2:43:0,18,25:0:0:18,25:644,883:-124.779,-72.2623,-66.8438,-52.8721,0,-45.3463	1/1:75:0,75,0:0:0:75,0:2688,0:-242.165,-22.5773,0,-242.165,-22.5773,-242.165	1/2:45:0,28,17:0:0:28,17:985,594:-128.851,-48.6681,-40.2392,-80.5327,0,-75.4152	1/1:32:0,32,0:0:0:32,0:1140,0:-102.909,-9.63296,0,-102.909,-9.63296,-102.909	1/1:276:2,269,0:2:69:269,0:9614,0:-858.657,-75.3722,0,-859.259,-80.9771,-864.865	1/1:194:0,193,1:0:0:193,1:6895,32:-620.299,-58.0988,0,-617.721,-55.2005,-617.42	1/1:234:0,233,0:0:0:233,0:8330,0:-749.497,-70.14,0,-749.497,-70.14,-749.497	1/2:81:0,46,35:0:0:46,35:1643,1240:-235.324,-101.368,-87.521,-134.31,0,-123.774	1/2:124:1,58,63:1:32:58,63:2080,2161:-342.273,-172.914,-158.032,-167.133,0,-150.746	1/1:82:0,80,0:0:0:80,0:2868,0:-258.051,-24.0824,0,-258.051,-24.0824,-258.051	1/2:330:0,175,149:0:0:175,149:6268,5206:-934.69,-423.509,-370.829,-511.203,0,-466.349	1/2:264:0,132,131:0:0:132,131:4748,4532:-755.722,-368.335,-328.599,-387.449,0,-348.014	1/1:22:0,21,0:0:0:21,0:748,0:-67.2856,-6.32163,0,-67.2856,-6.32163,-67.2856	1/2:395:0,207,188:0:0:207,188:7404,6558:-1137.47,-533.728,-471.415,-604.091,0,-547.498	1/1:168:0,164,3:0:0:164,3:5830,108:-524.452,-49.3689,0,-515.639,-40.5567,-514.736	1/1:112:0,108,2:0:0:108,2:3871,68:-348.265,-32.5112,0,-342.749,-26.973,-342.147	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:9:0,7,2:0:0:7,2:248,72:-26.4331,-6.23466,-4.12745,-20.557,0,-19.9549	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/2:183:0,87,95:0:0:87,95:3091,3352:-524.816,-272.943,-246.754,-251.867,0,-223.269	1/2:283:0,155,126:0:0:155,126:5541,4437:-813.152,-361.351,-314.691,-451.927,0,-413.998	1/1:65:0,65,0:0:0:65,0:2328,0:-209.78,-19.567,0,-209.78,-19.567,-209.78	1/2:2:0,1,1:0:0:1,1:36,32:-5.85565,-2.89828,-2.59725,-3.29724,0,-2.99621	1/1:183:0,180,2:0:0:180,2:6435,72:-578.901,-54.1854,0,-573.026,-48.2573,-572.424	1/2:35:0,25,10:0:0:25,10:887,343:-100.466,-28.1903,-20.6645,-72.6224,0,-69.6121	1/2:182:0,90,86:0:0:90,86:3190,3024:-506.027,-246.153,-219.06,-259.874,0,-233.985	1/2:65:0,35,30:0:0:35,30:1256,1068:-189.853,-87.4012,-76.8651,-102.809,0,-93.7783	1/2:63:1,30,32:1:34:30,32:1071,1124:-175.753,-88.7371,-82.4639,-84.5728,0,-77.6973	1/2:166:0,73,93:0:0:73,93:2616,3241:-477.28,-263.921,-241.946,-213.712,0,-185.717	1/1:163:0,163,0:0:0:163,0:5813,0:-523.281,-49.0679,0,-523.281,-49.0679,-523.281	1/1:235:0,234,0:0:0:234,0:8363,0:-752.464,-70.441,0,-752.464,-70.441,-752.464	1/1:161:0,159,0:0:0:159,0:5685,0:-511.506,-47.8638,0,-511.506,-47.8638,-511.506	1/1:155:0,155,0:0:0:155,0:5556,0:-500.163,-46.6597,0,-500.163,-46.6597,-500.163	1/2:207:0,102,105:0:0:102,105:3652,3632:-593.314,-295.486,-264.781,-298.179,0,-266.571	1/1:24:0,24,0:0:0:24,0:836,0:-75.5547,-7.22472,0,-75.5547,-7.22472,-75.5547	1/1:166:0,166,0:0:0:166,0:5948,0:-535.427,-49.971,0,-535.427,-49.971,-535.427	1/2:27:0,17,9:0:0:17,9:608,304:-74.2096,-24.6215,-19.504,-49.5748,0,-46.8655	1/2:20:0,12,8:0:0:12,8:432,272:-57.6639,-22.403,-18.7906,-35.6088,0,-33.2006	1/2:144:0,69,74:0:0:69,74:2472,2572:-410.705,-209.095,-188.324,-201.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chr06	245329	.	A	G	2.38768e-12	PASS	AB=0.550252;ABP=50.8056;AC=145;AF=0.771277;AN=188;AO=4740;CIGAR=1X;DP=5868;DPB=5868;DPRA=0;EPP=10295.8;EPPR=2443.75;GTI=35;LEN=1;MEANALT=1.04255;MQM=10.2996;MQMR=23.1379;NS=94;NUMALT=1;ODDS=425.429;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167197;QR=40213;RO=1124;RPL=4740;RPP=10295.8;RPPR=2443.75;RPR=0;RUN=1;SAF=4740;SAP=10295.8;SAR=0;SRF=1124;SRP=2443.75;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49:0:0:49:1748:-46.631,-14.7505,0	1/1:19:0,19:0:0:19:656:-18.1353,-5.71957,0	0/1:86:45,41:45:1611:41:1453:-12.2867,0,-67.2314	1/1:141:0,141:0:0:141:5005:-127.666,-42.4452,0	0/0:40:29,11:29:1040:11:387:0,-2.05714,-50.1665	0/0:23:19,4:19:676:4:144:0,-3.22732,-34.9167	0/1:98:50,48:50:1758:48:1667:-16.2368,0,-72.475	0/0:84:56,27:56:1999:27:951:0,-0.851968,-91.5799	0/1:82:27,55:27:963:55:1909:-27.3705,0,-29.8295	0/1:23:12,11:12:432:11:366:-3.01376,0,-17.5641	0/1:54:21,33:21:744:33:1159:-14.4154,0,-26.8745	1/1:96:0,96:0:0:96:3327:-87.4237,-28.8989,0	0/1:53:18,35:18:644:35:1227:-16.8413,0,-21.1636	0/1:47:18,29:18:648:29:999:-13.2173,0,-22.9104	1/1:56:0,56:0:0:56:1957:-52.3501,-16.8577,0	0/1:51:28,23:28:1008:23:809:-5.3995,0,-42.5504	1/1:33:0,33:0:0:33:1139:-29.7271,-9.93399,0	0/1:25:5,20:5:180:20:688:-10.5215,0,-2.95703	1/1:35:0,35:0:0:35:1243:-31.5602,-10.5361,0	1/1:190:0,190:0:0:190:6737:-174.662,-57.1957,0	1/1:65:0,65:0:0:65:2262:-58.4861,-19.567,0	1/1:133:0,133:0:0:133:4716:-120.848,-40.037,0	0/1:88:35,53:35:1260:53:1872:-22.4659,0,-45.5396	0/1:49:21,28:21:756:28:991:-10.5159,0,-28.4614	1/1:111:0,111:0:0:111:3903:-104.013,-33.4143,0	1/1:103:9,94:9:324:94:3339:-67.2375,-13.6447,0	0/1:191:106,85:106:3796:85:3024:-21.9383,0,-159.741	1/1:20:0,20:0:0:20:693:-19.2959,-6.0206,0	1/1:88:6,82:6:216:82:2923:-65.5855,-14.5773,0	1/1:80:4,76:4:144:76:2719:-61.2311,-15.6506,0	1/1:78:0,78:0:0:78:2772:-71.4337,-23.4803,0	0/0:10:7,3:7:243:3:108:0,-0.213046,-12.3199	1/1:32:0,32:0:0:32:1148:-28.8703,-9.63296,0	0/1:19:8,11:8:288:11:392:-4.26928,0,-10.9161	0/1:12:6,6:6:216:6:192:-1.84947,0,-8.9214	1/1:22:0,22:0:0:22:792:-22.3671,-6.62266,0	1/1:84:0,84:0:0:84:2948:-78.0655,-25.2865,0	0/1:35:21,14:21:748:14:500:-3.39703,0,-32.6213	1/1:63:0,63:0:0:63:2232:-57.6197,-18.9649,0	1/1:3:0,3:0:0:3:108:-2.79725,-0.90309,0	1/1:71:1,70:1:36:70:2508:-62.3534,-19.0943,0	0/1:22:5,17:5:180:17:587:-8.75077,0,-3.86012	0/1:82:46,36:46:1647:36:1279:-9.10008,0,-69.8776	1/1:30:4,26:4:144:26:899:-15.0297,-0.599098,0	0/1:43:18,25:18:648:25:868:-10.8411,0,-24.2012	1/1:57:3,54:3:108:54:1916:-47.4966,-11.1394,0	1/1:72:0,72:0:0:72:2551:-67.4155,-21.6742,0	1/1:98:0,98:0:0:98:3483:-89.4338,-29.5009,0	1/1:78:0,78:0:0:78:2759:-71.4262,-23.4803,0	1/1:67:0,67:0:0:67:2381:-66.3358,-20.169,0	1/1:65:2,63:2:72:63:2240:-52.0539,-14.8859,0	1/1:7:0,7:0:0:7:243:-6.38755,-2.10721,0	1/1:85:0,85:0:0:85:3015:-76.752,-25.5876,0	1/1:14:0,14:0:0:14:484:-12.6808,-4.21442,0	0/1:30:10,20:10:360:20:716:-10.0343,0,-11.7068	0/1:89:37,52:37:1320:52:1844:-20.2984,0,-49.2409	1/1:32:0,32:0:0:32:1116:-28.8354,-9.63296,0	1/1:9:0,9:0:0:9:324:-8.19196,-2.70927,0	1/1:7:0,7:0:0:7:252:-6.39372,-2.10721,0	1/1:76:1,75:1:36:75:2642:-66.3154,-20.5994,0	0/1:85:27,58:27:968:58:2063:-26.6497,0,-31.1819	0/1:7:4,3:4:144:3:108:-1.97292,0,-6.32459	1/1:101:1,100:1:36:100:3533:-89.3681,-27.7554,0	1/1:59:0,59:0:0:59:2112:-53.1438,-17.7608,0	1/1:37:0,37:0:0:37:1303:-34.5953,-11.1381,0	1/1:30:0,30:0:0:30:1076:-28.2282,-9.0309,0	0/1:67:44,23:44:1584:23:810:-0.598385,0,-71.3021	1/1:30:2,28:2:72:28:1004:-22.5539,-5.06903,0	0/1:45:12,33:12:432:33:1164:-16.2164,0,-11.2933	1/1:11:0,11:0:0:11:392:-9.98885,-3.31133,0	1/1:35:0,35:0:0:35:1220:-31.5433,-10.5361,0	0/1:28:6,22:6:212:22:784:-11.449,0,-4.07731	1/1:201:0,201:0:0:201:7096:-184.428,-60.507,0	0/1:69:27,42:27:964:42:1492:-18.1536,0,-33.7211	0/1:113:64,48:64:2292:48:1693:-9.26565,0,-97.6556	0/1:118:62,56:62:2224:56:1978:-14.9101,0,-90.6116	1/1:95:0,94:0:0:94:3312:-88.5365,-28.2968,0	1/1:79:0,79:0:0:79:2806:-73.5036,-23.7814,0	0/1:20:11,9:11:396:9:320:-2.17001,0,-16.7681	1/1:42:0,42:0:0:42:1474:-38.2569,-12.6433,0	1/1:68:0,68:0:0:68:2421:-68.1476,-20.47,0	0/1:121:60,61:60:2147:61:2152:-22.2005,0,-87.7227	1/1:59:0,59:0:0:59:2073:-53.1097,-17.7608,0	1/1:57:0,57:0:0:57:1989:-52.4878,-17.1587,0	0/1:27:10,17:10:360:17:595:-7.24829,0,-12.6099	1/1:103:1,102:1:32:102:3471:-90.6084,-28.7573,0	0/1:28:12,16:12:424:16:567:-6.05082,0,-16.3561	1/1:70:0,70:0:0:70:2428:-65.4489,-21.0721,0	0/1:72:22,50:22:792:50:1767:-24.4356,0,-24.8237	1/1:63:0,63:0:0:63:2173:-59.1576,-18.9649,0	0/1:147:51,95:51:1817:95:3370:-46.3415,0,-59.3611	0/1:53:29,24:29:1036:24:852:-5.72012,0,-44.525	1/1:39:0,39:0:0:39:1396:-37.644,-11.7402,0	1/1:84:1,83:1:36:83:2891:-76.8016,-23.0077,0
chr06	250963	.	TCA	TCG	92170.8	PASS	AB=0.432121;ABP=159.252;AC=135;AF=0.733696;AN=184;AO=4595;CIGAR=2M1X;DP=6843;DPB=6843;DPRA=10.7316;EPP=9980.93;EPPR=4849.74;GTI=3;LEN=1;MEANALT=1.15385;MQM=59.8631;MQMR=59.9776;NS=92;NUMALT=1;ODDS=2.11384;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162313;QR=78663;RO=2232;RPL=4588;RPP=9920.22;RPPR=4849.74;RPR=7;RUN=1;SAF=4588;SAP=9920.22;SAR=7;SRF=2232;SRP=4849.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:73:0,73:0:0:73:2573:-231.78,-21.9752,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:112:78,34:78:2778:34:1199:-74.4985,0,-216.547	1/1:153:0,152:0:0:152:5385:-484.411,-45.7566,0	0/1:62:30,32:30:1053:32:1136:-83.8835,0,-76.4161	0/1:68:29,39:29:998:39:1388:-104.747,0,-69.6582	0/1:79:52,27:52:1838:27:972:-64.0165,0,-141.919	0/1:111:54,57:54:1890:57:2006:-147.398,0,-136.964	0/1:151:82,68:82:2868:68:2385:-169.392,0,-212.845	0/1:81:37,44:37:1274:44:1538:-114.327,0,-90.5731	0/1:39:24,15:24:844:15:540:-37.1917,0,-64.538	1/1:80:0,80:0:0:80:2826:-254.577,-24.0824,0	0/1:64:31,33:31:1109:33:1180:-87.2421,0,-80.8554	0/1:56:36,20:36:1258:20:694:-45.9212,0,-96.664	1/1:52:0,51:0:0:51:1795:-161.472,-15.3525,0	0/1:65:36,29:36:1269:29:1044:-74.7079,0,-94.9457	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	0/1:26:9,16:9:324:16:568:-43.5666,0,-21.6203	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:97:0,97:0:0:97:3417:-307.741,-29.1999,0	1/1:124:0,124:0:0:124:4367:-393.2,-37.3277,0	1/1:31:0,31:0:0:31:1087:-98.1375,-9.33193,0	0/1:126:71,55:71:2514:55:1923:-135.414,0,-188.582	0/1:44:21,23:21:741:23:811:-60.0631,0,-53.7673	1/1:59:0,56:0:0:56:1983:-178.369,-16.8577,0	0/1:309:168,140:168:5921:140:4977:-354.841,0,-439.929	0/1:223:144,79:144:5047:79:2775:-182.86,0,-387.256	1/1:31:0,31:0:0:31:1108:-100.025,-9.33193,0	0/1:185:99,86:99:3480:86:3042:-218.318,0,-257.723	1/1:48:2,46:2:72:46:1635:-140.601,-7.61272,0	1/1:87:5,82:5:170:82:2898:-245.406,-10.5556,0	0/1:7:6,1:6:214:1:36:-1.49107,0,-17.5006	.:.:.:.:.:.:.:.	0/1:9:6,3:6:201:3:108:-7.3659,0,-15.7078	0/1:5:2,3:2:70:3:108:-8.57002,0,-5.14218	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:199:97,101:97:3472:101:3555:-260.189,0,-252.729	0/1:107:51,56:51:1808:56:1991:-147.252,0,-130.792	1/1:30:0,30:0:0:30:1072:-96.7906,-9.0309,0	.:.:.:.:.:.:.:.	1/1:75:5,70:5:174:70:2478:-207.269,-6.57543,0	0/1:22:16,6:16:564:6:212:-12.8021,0,-44.4675	0/1:170:99,70:99:3492:70:2448:-169.333,0,-263.26	0/1:58:30,28:30:1060:28:1000:-72.7693,0,-78.2516	0/1:63:40,23:40:1412:23:811:-54.3427,0,-108.411	0/1:117:71,46:71:2509:46:1632:-111.948,0,-190.843	1/1:62:0,62:0:0:62:2207:-198.888,-18.6639,0	1/1:133:0,133:0:0:133:4645:-418.205,-40.037,0	1/1:80:0,80:0:0:80:2840:-255.825,-24.0824,0	1/1:68:0,68:0:0:68:2394:-215.712,-20.47,0	0/1:192:92,100:92:3240:100:3510:-258.312,0,-234.026	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:65:0,65:0:0:65:2272:-204.74,-19.567,0	0/1:27:17,9:17:603:9:324:-21.3183,0,-46.414	0/1:7:2,5:2:69:5:162:-12.7916,0,-4.44533	0/1:113:68,45:68:2383:45:1599:-110.18,0,-180.712	1/1:105:0,103:0:0:103:3631:-326.669,-31.0061,0	0/1:7:1,6:1:34:6:212:-17.3176,0,-1.2917	0/1:11:6,5:6:213:5:180:-13.2407,0,-16.205	1/1:97:0,96:0:0:96:3376:-303.691,-28.8989,0	0/1:90:55,35:55:1939:35:1243:-85.0788,0,-147.694	0/1:7:3,4:3:106:4:135:-10.3753,0,-7.78189	1/1:116:0,116:0:0:116:4139:-372.693,-34.9195,0	1/1:115:0,114:0:0:114:4028:-362.348,-34.3174,0	1/1:61:0,61:0:0:61:2111:-190.254,-18.3628,0	1/1:40:0,40:0:0:40:1428:-128.814,-12.0412,0	0/1:73:45,28:45:1598:28:1004:-68.696,0,-122.135	1/1:69:0,69:0:0:69:2440:-219.844,-20.7711,0	0/1:19:14,5:14:497:5:172:-10.0984,0,-39.3437	1/1:46:0,46:0:0:46:1626:-146.627,-13.8474,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:17:10,7:10:351:7:248:-17.5467,0,-26.8103	1/1:121:0,121:0:0:121:4220:-379.981,-36.4246,0	0/1:103:60,43:60:2109:43:1532:-107.059,0,-159.073	0/1:165:115,50:115:4032:50:1766:-109.537,0,-313.393	0/1:112:69,43:69:2451:43:1527:-104.005,0,-187.13	1/1:82:0,82:0:0:82:2907:-261.863,-24.6845,0	1/1:59:0,59:0:0:59:2104:-189.629,-17.7608,0	0/0:7:7,0:7:235:0:0:0,-2.10721,-21.4768	1/1:52:0,52:0:0:52:1839:-165.789,-15.6536,0	1/1:63:0,63:0:0:63:2221:-200.141,-18.9649,0	0/1:132:76,56:76:2693:56:1955:-136.486,0,-202.789	1/1:47:0,47:0:0:47:1654:-149.144,-14.1484,0	1/1:54:0,54:0:0:54:1912:-172.358,-16.2556,0	0/1:42:23,19:23:813:19:680:-48.8826,0,-60.8476	1/1:108:1,106:1:36:106:3754:-334.45,-28.9718,0	0/1:23:12,11:12:410:11:388:-28.3328,0,-30.302	1/1:51:0,51:0:0:51:1815:-163.627,-15.3525,0	0/1:79:40,39:40:1428:39:1373:-100.081,0,-105.036	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	0/1:62:42,20:42:1483:20:700:-44.6596,0,-115.1	0/1:65:42,23:42:1480:23:824:-54.913,0,-113.927	1/1:78:0,78:0:0:78:2743:-246.484,-23.4803,0	1/1:116:1,115:1:36:115:4062:-362.168,-31.3212,0
chr06	251047	.	C	G	458303	PASS	AB=0.475598;ABP=117.358;AC=139;AF=0.739362;AN=188;AO=22245;CIGAR=1X;DP=33908;DPB=33908;DPRA=0;EPP=45922.9;EPPR=24956.2;GTI=6;LEN=1;MEANALT=1.32979;MQM=59.9532;MQMR=59.9893;NS=94;NUMALT=1;ODDS=0.190491;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=796074;QR=414834;RO=11623;RPL=21967;RPP=45922.9;RPPR=24956.2;RPR=278;RUN=1;SAF=0;SAP=48307.4;SAR=22245;SRF=0;SRP=25242;SRR=11623;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:0,76:0:0:76:2713:-244.412,-22.8783,0	1/1:234:0,233:0:0:233:8338:-750.068,-70.14,0	0/1:235:143,91:143:5070:91:3239:-220.932,0,-385.646	1/1:377:0,377:0:0:377:13510:-1215.68,-113.488,0	0/1:93:52,41:52:1868:41:1465:-103.044,0,-140.403	0/1:36:16,20:16:572:20:720:-54.2917,0,-40.9763	0/1:89:48,41:48:1720:41:1457:-104.633,0,-128.294	0/1:219:103,116:103:3688:116:4152:-307.934,0,-266.197	0/1:132:69,62:69:2457:62:2220:-160.262,0,-181.588	0/1:139:90,49:90:3198:49:1760:-116.841,0,-246.198	0/1:411:227,182:227:8164:182:6521:-463.536,0,-611.362	1/1:85:0,84:0:0:84:2996:-269.501,-25.2865,0	0/1:65:35,30:35:1256:30:1076:-77.5859,0,-93.7783	0/1:51:17,34:17:600:34:1216:-94.394,0,-38.9767	1/1:47:0,47:0:0:47:1683:-151.757,-14.1484,0	0/1:66:26,40:26:936:40:1436:-109.67,0,-64.6915	1/1:32:0,31:0:0:31:1080:-97.1463,-9.33193,0	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	1/1:146:0,146:0:0:146:5218:-469.758,-43.9504,0	1/1:206:0,206:0:0:206:7347:-660.909,-62.0122,0	1/1:211:0,211:0:0:211:7561:-680.528,-63.5173,0	1/1:246:0,246:0:0:246:8805:-792.435,-74.0534,0	0/1:199:112,86:112:4012:86:3080:-217.377,0,-301.305	0/1:98:55,43:55:1980:43:1528:-108.31,0,-148.973	1/1:108:0,108:0:0:108:3872:-348.673,-32.5112,0	0/1:403:223,179:223:7974:179:6409:-455.493,0,-596.306	0/1:312:172,140:172:6126:140:5024:-358.384,0,-457.519	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:417:215,199:215:7682:199:7136:-517.31,0,-566.427	1/1:499:17,482:17:612:482:17269:-1498.42,-94.8005,0	1/1:138:3,135:3:108:135:4844:-426.038,-31.467,0	0/1:1822:923,897:923:32881:897:32108:-2339.61,0,-2410.03	1/1:1517:6,1509:6:216:1509:54000:-4838.12,-436.63,0	0/1:1488:710,776:710:25319:776:27808:-2054.08,0,-1830.32	0/1:2414:1198,1214:1198:42817:1214:43395:-3177.58,0,-3125.01	1/1:1992:3,1986:3:108:1986:71172:-6392.72,-589.033,0	0/1:167:74,93:74:2609:93:3324:-249.106,0,-184.784	0/1:282:143,138:143:5128:138:4956:-361.199,0,-376.712	1/1:407:0,407:0:0:407:14580:-1311.81,-122.519,0	0/1:825:396,429:396:14103:429:15342:-1132.13,0,-1020.68	1/1:172:8,164:8:269:164:5892:-505.823,-27.241,0	0/1:194:106,88:106:3795:88:3142:-224.605,0,-283.348	0/1:269:138,131:138:4937:131:4692:-341.46,0,-363.502	0/1:83:44,39:44:1567:39:1400:-101.314,0,-116.335	0/1:67:36,31:36:1292:31:1100:-79.1413,0,-96.4148	0/1:202:125,77:125:4446:77:2752:-187.114,0,-339.502	1/1:145:0,145:0:0:145:5165:-464.984,-43.6494,0	1/1:280:0,280:0:0:280:10008:-900.601,-84.2884,0	1/1:101:0,101:0:0:101:3591:-323.397,-30.404,0	1/1:168:1,167:1:36:167:5992:-535.785,-46.9748,0	0/1:155:100,55:100:3531:55:1966:-130.555,0,-271.338	1/1:1698:3,1694:3:108:1694:60659:-5446.99,-501.133,0	1/1:217:0,217:0:0:217:7729:-695.641,-65.3235,0	0/1:83:46,37:46:1640:37:1332:-95.1969,0,-122.903	0/1:1010:569,441:569:20313:441:15777:-1115.57,0,-1523.63	0/1:282:153,129:153:5454:129:4601:-329.365,0,-405.606	1/1:58:1,57:1:36:57:2040:-180.268,-13.8615,0	0/1:1855:999,854:999:35702:854:30593:-2194.26,0,-2653.86	0/1:1213:667,543:667:23765:543:19401:-1381,0,-1773.6	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	0/1:97:64,33:64:2272:33:1180:-77.3081,0,-175.54	0/1:1088:489,598:489:17454:598:21404:-1598.1,0,-1242.9	1/1:213:0,213:0:0:213:7587:-682.871,-64.1194,0	1/1:216:2,214:2:72:214:7641:-680.89,-58.1858,0	1/1:100:0,99:0:0:99:3540:-318.441,-29.802,0	1/1:106:0,106:0:0:106:3796:-341.837,-31.9092,0	0/1:296:154,142:154:5499:142:5078:-368.057,0,-405.927	1/1:306:5,300:5:176:300:10750:-951.213,-75.9984,0	0/1:480:249,231:249:8917:231:8296:-602.151,0,-658.016	1/1:48:1,47:1:36:47:1679:-147.799,-10.8512,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:1146:667,476:667:23723:476:17053:-1190.01,0,-1790	1/1:152:0,152:0:0:152:5444:-490.089,-45.7566,0	0/1:118:58,60:58:2060:60:2152:-158.426,0,-150.15	0/1:158:90,68:90:3224:68:2428:-170.193,0,-242.819	0/1:218:118,100:118:4198:100:3577:-256.511,0,-312.376	1/1:120:1,119:1:36:119:4264:-380.338,-32.5253,0	1/1:156:2,154:2:72:154:5503:-488.559,-40.124,0	0/1:1575:825,749:825:29526:749:26820:-1938.51,0,-2182.26	1/1:141:1,138:1:32:138:4956:-442.962,-38.9771,0	1/1:139:0,139:0:0:139:4968:-447.261,-41.8432,0	0/1:267:139,127:139:4958:127:4568:-330.847,0,-365.934	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:55:0,55:0:0:55:1951:-175.865,-16.5567,0	0/1:44:23,21:23:806:21:752:-54.7609,0,-59.6129	1/1:127:0,127:0:0:127:4530:-407.867,-38.2308,0	0/1:9:6,3:6:201:3:108:-7.3659,0,-15.7078	1/1:79:1,78:1:36:78:2760:-245.043,-20.1831,0	0/1:92:44,48:44:1576:48:1712:-126.669,0,-114.437	1/1:332:0,332:0:0:332:11886:-1069.58,-99.942,0	0/1:1057:554,503:554:19811:503:18003:-1301.54,0,-1464.28	0/1:65:41,24:41:1442:24:860:-58.154,0,-110.505	1/1:93:0,93:0:0:93:3277:-29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chr06	256772	.	T	C	182652	PASS	AB=0.504969;ABP=4.36991;AC=140;AF=0.744681;AN=188;AO=9239;CIGAR=1X;DP=12409;DPB=12409;DPRA=0;EPP=20065.2;EPPR=6871.38;GTI=0;LEN=1;MEANALT=1.03191;MQM=41.1293;MQMR=50.1895;NS=94;NUMALT=1;ODDS=7.60883;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329685;QR=113457;RO=3167;RPL=1;RPP=20056.6;RPPR=6854.03;RPR=9238;RUN=1;SAF=1;SAP=20056.6;SAR=9238;SRF=2;SRP=6862.7;SRR=3165;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57:0:0:57:2009:-173.981,-17.1587,0	1/1:181:1,180:1:36:180:6414:-554.11,-50.9034,0	0/1:185:101,84:101:3628:84:3001:-202.394,0,-267.437	1/1:310:1,309:1:36:309:11011:-957.662,-89.7328,0	0/1:41:19,22:19:680:22:792:-56.3416,0,-48.1156	0/1:93:37,56:37:1332:56:1984:-145.044,0,-91.4219	0/1:147:79,68:79:2836:68:2433:-167.52,0,-209.999	0/1:220:114,106:114:4096:106:3797:-259.412,0,-300.254	0/1:165:84,81:84:2993:81:2869:-197.857,0,-218.183	0/1:207:113,94:113:4049:94:3344:-226.52,0,-300.867	0/1:100:60,40:60:2160:40:1428:-94.1331,0,-163.077	1/1:74:1,73:1:36:73:2566:-218.384,-18.6932,0	0/1:49:25,24:25:896:24:864:-60.1075,0,-65.4587	0/1:120:65,55:65:2340:55:1953:-133.285,0,-172.875	1/1:62:0,62:0:0:62:2229:-194.172,-18.6639,0	0/1:62:22,40:22:792:40:1436:-104.971,0,-52.5536	1/1:83:0,83:0:0:83:2972:-258.076,-24.9855,0	0/1:60:25,35:25:900:35:1256:-90.9561,0,-62.9151	1/1:29:0,29:0:0:29:1044:-90.1084,-8.72987,0	1/1:236:0,236:0:0:236:8468:-737.569,-71.0431,0	1/1:257:0,257:0:0:257:9190:-792.115,-77.3647,0	1/1:134:0,134:0:0:134:4800:-420.55,-40.338,0	0/1:158:75,83:75:2665:83:2976:-213.462,0,-188.296	0/1:207:89,117:89:3162:117:4156:-295.746,0,-217.733	1/1:78:0,78:0:0:78:2789:-240.757,-23.4803,0	0/1:429:223,206:223:8000:206:7370:-519.15,0,-588.739	0/1:320:135,185:135:4840:185:6596:-472.215,0,-335.458	1/1:41:0,41:0:0:41:1457:-125.802,-12.3422,0	0/1:355:178,177:178:6373:177:6360:-454.1,0,-463.892	1/1:227:7,220:7:252:220:7878:-657.084,-45.4297,0	1/1:255:11,243:11:392:243:8667:-719.786,-41.3108,0	1/1:5:0,5:0:0:5:180:-15.8907,-1.50515,0	1/1:30:1,29:1:36:29:1044:-86.0222,-5.84328,0	0/1:11:8,3:8:288:3:108:-6.43462,0,-22.5858	0/1:11:4,7:4:144:7:252:-18.2844,0,-9.94595	1/1:26:0,26:0:0:26:936:-81.7963,-7.82678,0	0/1:221:90,131:90:3228:131:4674:-345.998,0,-222.749	0/1:320:145,175:145:5185:175:6244:-433.558,0,-365.328	1/1:92:0,92:0:0:92:3273:-279.927,-27.6948,0	0/1:9:8,1:8:288:1:36:-0.745221,0,-23.4157	1/1:193:0,193:0:0:193:6894:-593.617,-58.0988,0	0/1:36:18,18:18:648:18:648:-44.8207,0,-47.2582	0/1:185:97,88:97:3488:88:3149:-215.552,0,-255.927	0/1:68:27,41:27:968:41:1468:-107.967,0,-66.6496	0/1:66:42,24:42:1500:24:864:-56.0534,0,-114.691	0/1:149:87,62:87:3124:62:2213:-150.322,0,-235.543	1/1:156:0,155:0:0:155:5563:-479.595,-46.6597,0	1/1:219:0,219:0:0:219:7800:-678.944,-65.9256,0	1/1:172:0,172:0:0:172:6099:-532.122,-51.7772,0	1/1:220:1,219:1:36:219:7816:-677.024,-62.6401,0	0/1:161:98,63:98:3500:63:2253:-150.268,0,-266.044	1/1:23:0,23:0:0:23:828:-72.8362,-6.92369,0	1/1:188:0,188:0:0:188:6725:-581.91,-56.5936,0	0/1:36:15,21:15:540:21:756:-56.2475,0,-37.9043	0/1:34:26,8:26:936:8:288:-14.4947,0,-72.8709	0/1:177:106,71:106:3789:71:2544:-166.968,0,-285.391	1/1:42:0,42:0:0:42:1508:-132.311,-12.6433,0	0/1:15:8,7:8:288:7:252:-17.6449,0,-21.7025	0/1:29:16,13:16:576:13:468:-32.9461,0,-43.3711	1/1:146:0,146:0:0:146:5216:-448.833,-43.9504,0	0/1:120:63,57:63:2264:57:2048:-142.382,0,-166.362	0/1:23:9,14:9:316:14:504:-37.154,0,-21.5828	1/1:339:0,339:0:0:339:12092:-1067.33,-102.049,0	1/1:284:1,283:1:36:283:10039:-873.589,-81.906,0	1/1:148:3,145:3:108:145:5195:-435.934,-34.5319,0	1/1:110:0,110:0:0:110:3856:-338.248,-33.1133,0	0/1:265:120,145:120:4316:145:5174:-372.501,0,-304.481	1/1:143:1,142:1:36:142:5051:-436.628,-39.4608,0	0/1:43:21,22:21:756:22:788:-55.0893,0,-54.7922	1/1:110:0,110:0:0:110:3922:-338.763,-33.1133,0	1/1:87:0,87:0:0:87:3091:-271.889,-26.1896,0	0/1:40:23,17:23:820:17:612:-41.8567,0,-61.8488	1/1:103:0,103:0:0:103:3678:-318.859,-31.0061,0	0/1:86:37,49:37:1328:49:1756:-126.706,0,-93.3398	0/1:349:168,181:168:6013:181:6387:-445.638,0,-432.101	0/1:229:106,123:106:3781:123:4405:-316.049,0,-268.855	1/1:85:0,85:0:0:85:3032:-263.013,-25.5876,0	1/1:208:2,206:2:68:206:7343:-630.824,-56.1768,0	0/1:25:11,14:11:396:14:500:-36.3362,0,-27.0319	1/1:160:0,160:0:0:160:5699:-490.28,-48.1648,0	1/1:165:0,165:0:0:165:5871:-509.232,-49.67,0	0/1:303:128,175:128:4551:175:6201:-448.921,0,-315.779	1/1:90:0,90:0:0:90:3216:-279.215,-27.0927,0	1/1:72:0,72:0:0:72:2584:-224.739,-21.6742,0	0/1:88:38,50:38:1360:50:1762:-127.519,0,-94.7928	1/1:128:0,128:0:0:128:4562:-398.422,-38.5318,0	0/1:60:28,32:28:1008:32:1140:-81.6303,0,-72.4348	1/1:75:0,75:0:0:75:2688:-234.552,-22.5773,0	0/1:79:39,40:39:1400:40:1436:-101.572,0,-101.575	1/1:44:0,44:0:0:44:1582:-135.719,-13.2453,0	0/1:119:63,56:63:2264:56:2001:-137.199,0,-167.097	0/1:64:44,20:44:1580:20:720:-44.1329,0,-122.362	1/1:100:0,100:0:0:100:3573:-311.229,-30.103,0	1/1:83:0,83:0:0:83:2969:-260.377,-24.9855,0
chr06	275547	.	CG	CC	94623.9	PASS	AB=0.493429;ABP=4.26597;AC=137;AF=0.736559;AN=186;AO=4683;CIGAR=1M1X;DP=6402;DPB=6402;DPRA=70.3297;EPP=10172;EPPR=3701.03;GTI=1;LEN=1;MEANALT=1.10989;MQM=59.9893;MQMR=59.9841;NS=93;NUMALT=1;ODDS=1.5339;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164176;QR=59428;RO=1703;RPL=4682;RPP=10163.3;RPPR=3692.35;RPR=1;RUN=1;SAF=4682;SAP=10163.3;SAR=1;SRF=1702;SRP=3692.35;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1291:-116.487,-11.1381,0	1/1:15:1,14:1:36:14:500:-41.7379,-0.917175,0	0/1:79:30,49:30:1046:49:1715:-130.85,0,-70.6662	1/1:187:3,184:3:108:184:6487:-573.841,-46.2174,0	0/1:21:15,6:15:527:6:212:-13.1032,0,-41.4394	0/1:36:18,18:18:619:18:644:-47.4535,0,-45.194	0/1:87:35,52:35:1232:52:1806:-136.627,0,-84.9934	0/1:73:39,33:39:1366:33:1176:-84.1139,0,-101.202	0/1:51:38,13:38:1311:13:459:-26.2916,0,-102.931	0/1:58:15,43:15:536:43:1531:-120.623,0,-31.1153	0/1:45:21,24:21:746:24:821:-60.6536,0,-53.918	1/1:122:0,122:0:0:122:4177:-376.117,-36.7257,0	0/1:80:44,36:44:1542:36:1253:-88.9874,0,-114.988	0/1:58:33,25:33:1138:25:871:-61.2457,0,-85.2626	1/1:89:0,89:0:0:89:3112:-280.307,-26.7917,0	0/1:70:33,37:33:1140:37:1272:-93.7035,0,-81.8303	1/1:31:0,31:0:0:31:1071:-96.697,-9.33193,0	0/1:41:22,19:22:775:19:669:-48.1926,0,-57.7289	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:103:0,103:0:0:103:3632:-327.086,-31.0061,0	1/1:141:1,140:1:36:140:4869:-434.771,-38.847,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:89:46,43:46:1566:43:1510:-109.397,0,-114.43	0/1:41:14,27:14:488:27:963:-74.6437,0,-31.9079	1/1:70:0,70:0:0:70:2406:-216.792,-21.0721,0	0/1:134:64,70:64:2277:70:2487:-183.745,0,-164.854	0/1:242:145,96:145:5095:96:3363:-229.979,0,-385.789	1/1:40:0,40:0:0:40:1402:-126.476,-12.0412,0	0/1:162:82,80:82:2866:80:2830:-206.174,0,-209.41	1/1:38:3,35:3:108:35:1237:-101.557,-1.36397,0	1/1:106:0,106:0:0:106:3771:-339.588,-31.9092,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:5:0,5:0:0:5:161:-14.8066,-1.50515,0	0/1:236:115,121:115:4001:121:4256:-312.178,0,-289.24	0/1:80:37,43:37:1289:43:1536:-114.451,0,-92.226	1/1:53:0,53:0:0:53:1788:-161.193,-15.9546,0	.:.:.:.:.:.:.:.	1/1:130:1,129:1:36:129:4562:-407.15,-35.5356,0	0/1:55:25,30:25:852:30:1024:-75.9061,0,-60.4329	0/1:96:40,54:40:1378:54:1904:-142.978,0,-95.6561	0/1:53:36,17:36:1273:17:571:-35.7508,0,-98.9184	0/1:70:29,41:29:989:41:1448:-109.541,0,-68.2418	0/1:79:49,30:49:1741:30:1029:-69.1321,0,-133.192	1/1:66:0,66:0:0:66:2349:-211.668,-19.868,0	1/1:48:0,43:0:0:43:1528:-137.473,-12.9443,0	1/1:75:0,75:0:0:75:2650:-238.745,-22.5773,0	1/1:65:0,65:0:0:65:2295:-206.789,-19.567,0	0/1:102:44,58:44:1538:58:2028:-152.083,0,-108.004	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	1/1:69:0,69:0:0:69:2442:-220.034,-20.7711,0	0/1:59:25,34:25:860:34:1201:-90.6329,0,-59.9512	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:209:109,100:109:3772:100:3501:-252.385,0,-276.767	1/1:42:0,42:0:0:42:1460:-131.691,-12.6433,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:5:0,4:0:0:4:139:-12.4951,-1.20412,0	1/1:72:0,72:0:0:72:2519:-226.961,-21.6742,0	0/1:108:49,59:49:1734:59:2047:-151.987,0,-123.833	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:121:0,121:0:0:121:4263:-383.85,-36.4246,0	1/1:80:0,80:0:0:80:2821:-254.129,-24.0824,0	1/1:58:0,58:0:0:58:2065:-186.121,-17.4597,0	1/1:113:0,113:0:0:113:3955:-356.143,-34.0164,0	0/1:43:24,19:24:848:19:684:-48.946,0,-63.6947	1/1:79:0,79:0:0:79:2773:-249.809,-23.7814,0	0/1:40:20,20:20:684:20:683:-49.7448,0,-49.8365	1/1:29:0,29:0:0:29:1004:-90.6676,-8.72987,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:13:7,6:7:240:6:212:-15.5114,0,-18.0204	1/1:100:0,97:0:0:97:3359:-302.17,-29.1999,0	0/1:48:31,17:31:1096:17:603:-40.1501,0,-84.4618	0/1:91:49,42:49:1698:42:1472:-105.378,0,-125.708	0/1:132:67,64:67:2345:64:2276:-165.308,0,-171.512	1/1:18:0,18:0:0:18:631:-57.1157,-5.41854,0	1/1:40:0,40:0:0:40:1386:-125.033,-12.0412,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:82:0,82:0:0:82:2902:-261.417,-24.6845,0	1/1:63:0,62:0:0:62:2117:-190.542,-18.6639,0	0/1:119:48,71:48:1673:71:2492:-188.707,0,-115.031	1/1:44:0,44:0:0:44:1525:-137.537,-13.2453,0	1/1:70:0,70:0:0:70:2428:-218.774,-21.0721,0	0/1:45:21,24:21:738:24:836:-62.01,0,-53.1971	1/1:124:1,122:1:34:122:4267:-380.803,-33.9776,0	0/1:24:16,8:16:572:8:279:-18.2228,0,-44.5889	1/1:76:0,76:0:0:76:2611:-235.236,-22.8783,0	0/1:74:37,37:37:1256:37:1300:-95.0244,0,-91.058	1/1:41:0,41:0:0:41:1413:-127.461,-12.3422,0	0/1:93:51,42:51:1750:42:1474:-104.957,0,-129.783	0/1:83:57,26:57:2005:26:928:-58.8528,0,-155.736	1/1:71:0,71:0:0:71:2500:-225.25,-21.3731,0	1/1:100:0,100:0:0:100:3499:-315.123,-30.103,0
chr06	288660	.	A	G	63884.6	PASS	AB=0.468006;ABP=22.0464;AC=137;AF=0.736559;AN=186;AO=3079;CIGAR=1X;DP=4234;DPB=4234;DPRA=18.589;EPP=6671.61;EPPR=2502.38;GTI=2;LEN=1;MEANALT=1.03297;MQM=59.9857;MQMR=60;NS=93;NUMALT=1;ODDS=0.0292604;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109724;QR=41243;RO=1151;RPL=0;RPP=6688.97;RPPR=2502.38;RPR=3079;RUN=1;SAF=3077;SAP=6671.61;SAR=2;SRF=1151;SRP=2502.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:82:0,82:0:0:82:2917:-262.764,-24.6845,0	0/1:94:45,49:45:1612:49:1722:-126.964,0,-117.073	1/1:82:0,82:0:0:82:2935:-264.384,-24.6845,0	0/1:32:13,19:13:468:19:680:-51.8962,0,-32.8267	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/1:76:47,29:47:1692:29:1036:-70.6756,0,-129.689	0/1:96:48,48:48:1720:48:1700:-124.384,0,-126.187	0/1:39:23,16:23:809:16:568:-39.7117,0,-61.3881	0/1:53:28,25:28:1000:25:892:-64.6451,0,-74.3608	0/1:28:14,14:14:500:14:496:-36.5454,0,-36.9073	1/1:28:0,28:0:0:28:993:-89.6123,-8.42884,0	0/1:22:13,9:13:468:9:320:-22.5197,0,-35.837	0/1:45:21,24:21:748:24:843:-62.6416,0,-54.0989	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:23:11,12:11:392:12:428:-31.9351,0,-28.6964	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/1:29:10,19:10:356:19:680:-52.7993,0,-23.6514	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	0/1:32:20,12:20:720:12:413:-27.8649,0,-55.4958	0/1:40:26,14:26:936:14:504:-33.6569,0,-72.5183	1/1:28:0,28:0:0:28:989:-89.322,-8.42884,0	0/1:188:92,96:92:3292:96:3432:-252.5,0,-239.906	0/1:76:45,31:45:1620:31:1112:-77.5131,0,-123.212	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:97:53,44:53:1881:44:1552:-110.769,0,-140.367	1/1:73:1,72:1:36:72:2588:-229.57,-18.3769,0	1/1:55:0,55:0:0:55:1953:-176.045,-16.5567,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:78:52,26:52:1868:26:924:-59.9973,0,-144.919	0/1:109:63,46:63:2264:46:1644:-115.436,0,-171.21	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	.:.:.:.:.:.:.:.	1/1:79:0,78:0:0:78:2781:-250.17,-23.4803,0	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:72:39,33:39:1396:33:1180:-84.8339,0,-104.265	0/1:29:15,14:15:540:14:500:-36.6063,0,-40.2067	0/1:34:14,20:14:504:20:712:-54.1716,0,-35.4631	0/1:40:30,10:30:1068:10:356:-20.34,0,-84.3909	1/1:78:2,76:2:72:76:2689:-235.418,-16.6436,0	1/1:64:0,64:0:0:64:2288:-206.182,-19.2659,0	1/1:66:0,66:0:0:66:2330:-209.957,-19.868,0	1/1:78:0,77:0:0:77:2722:-244.862,-23.1793,0	0/1:85:63,22:63:2256:22:784:-45.2964,0,-177.715	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:56:0,55:0:0:55:1964:-176.675,-16.5567,0	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/1:33:22,11:22:792:11:392:-25.6861,0,-61.6717	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:67:38,29:38:1368:29:1028:-72.6635,0,-103.252	0/0:1:0,0:0:0:0:0:0,0,0	1/1:59:0,59:0:0:59:2101:-189.358,-17.7608,0	1/1:112:0,112:0:0:112:3991:-359.382,-33.7154,0	1/1:35:1,34:1:36:34:1216:-106.148,-6.93778,0	1/1:33:0,33:0:0:33:1160:-104.704,-9.93399,0	0/1:51:21,30:21:752:30:1064:-80.7191,0,-52.6537	1/1:70:2,68:2:72:68:2428:-211.939,-14.2354,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:61:0,61:0:0:61:2177:-196.195,-18.3628,0	0/1:20:7,13:7:252:13:453:-35.079,0,-17.0084	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	0/1:29:9,20:9:324:20:704:-54.9547,0,-20.776	0/1:75:38,37:38:1349:37:1316:-96.1646,0,-99.131	0/1:95:55,40:55:1972:40:1432:-100.58,0,-149.157	1/1:59:0,59:0:0:59:2108:-189.987,-17.7608,0	1/1:67:1,66:1:36:66:2364:-209.42,-16.5707,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:70:1,69:1:36:69:2472:-219.135,-17.4738,0	0/1:82:42,40:42:1504:40:1440:-105.213,0,-110.97	1/1:66:0,66:0:0:66:2361:-212.748,-19.868,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:25:12,13:12:428:13:442:-32.5785,0,-31.3331	1/1:53:0,53:0:0:53:1888:-170.198,-15.9546,0	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	1/1:35:0,35:0:0:35:1239:-111.812,-10.5361,0	0/1:36:19,17:19:684:17:599:-43.401,0,-51.0532	1/1:15:0,15:0:0:15:531:-48.1227,-4.51545,0	0/1:71:30,41:30:1080:41:1459:-110.232,0,-76.1401	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:48:0,48:0:0:48:1695:-152.834,-14.4494,0
chr06	288693	.	G	A	64176.3	PASS	AB=0.476462;ABP=13.1304;AC=139;AF=0.747312;AN=186;AO=3072;CIGAR=1X;DP=4189;DPB=4189;DPRA=11.3723;EPP=6665.09;EPPR=2426.37;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.9857;MQMR=60;NS=93;NUMALT=1;ODDS=0.2718;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109670;QR=39596;RO=1116;RPL=3068;RPP=6639.08;RPPR=2426.37;RPR=4;RUN=1;SAF=3069;SAP=6647.74;SAR=3;SRF=1116;SRP=2426.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	0/1:90:43,47:43:1540:47:1675:-123.944,0,-111.8	1/1:83:0,83:0:0:83:2949:-265.644,-24.9855,0	0/1:30:11,19:11:396:19:684:-52.8594,0,-26.9518	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:75:46,29:46:1639:29:1030:-70.4342,0,-125.221	0/1:97:47,50:47:1672:50:1788:-132.003,0,-121.567	0/1:37:22,15:22:784:15:536:-37.4367,0,-59.7458	0/1:54:28,26:28:1004:26:917:-66.589,0,-74.4202	0/1:27:13,14:13:464:14:504:-37.5703,0,-33.9697	1/1:29:0,29:0:0:29:1036:-93.0627,-8.72987,0	0/1:24:14,10:14:478:10:356:-25.1565,0,-36.1194	0/1:45:21,24:21:717:24:855:-63.7238,0,-51.2994	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:22:10,12:10:345:12:428:-32.2361,0,-24.7582	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/1:29:10,19:10:336:19:684:-53.1605,0,-21.8333	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:66:0,66:0:0:66:2345:-211.309,-19.868,0	1/1:43:0,43:0:0:43:1539:-138.802,-12.9443,0	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	0/1:31:19,12:19:676:12:432:-29.8893,0,-51.8361	0/1:38:25,13:25:885:13:464:-30.6584,0,-68.5274	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	0/1:183:90,93:90:3223:93:3340:-245.728,0,-235.203	0/1:74:43,31:43:1519:31:1088:-75.9511,0,-114.726	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:96:52,44:52:1864:44:1571:-112.782,0,-139.141	1/1:73:1,72:1:36:72:2571:-228.041,-18.3769,0	1/1:53:0,53:0:0:53:1889:-170.286,-15.9546,0	0/1:4:3,1:3:99:1:36:-2.39415,0,-8.03246	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:75:47,28:47:1635:28:1004:-68.0986,0,-124.857	0/1:104:60,44:60:2140:44:1576:-110.824,0,-161.561	1/1:21:0,21:0:0:21:739:-66.8324,-6.32163,0	.:.:.:.:.:.:.:.	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:70:38,32:38:1352:32:1144:-82.1974,0,-100.908	0/1:29:15,14:15:531:14:500:-36.6063,0,-39.392	0/1:33:12,21:12:432:21:752:-58.0723,0,-29.2872	0/1:38:27,11:27:956:11:386:-23.6366,0,-74.9166	1/1:75:2,73:2:72:73:2620:-229.211,-15.7405,0	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	1/1:64:0,63:0:0:63:2247:-202.241,-18.9649,0	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:86:61,25:61:2188:25:896:-55.0718,0,-171.297	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:54:0,54:0:0:54:1926:-173.617,-16.2556,0	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:33:22,11:22:769:11:387:-25.2328,0,-59.5946	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:65:36,29:36:1288:29:1025:-72.9941,0,-96.6566	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:112:0,112:0:0:112:4028:-362.707,-33.7154,0	1/1:34:1,33:1:36:33:1188:-103.63,-6.63675,0	1/1:30:0,30:0:0:30:1056:-95.349,-9.0309,0	0/1:48:19,29:19:653:29:1031:-78.6532,0,-44.6398	1/1:70:3,67:3:108:67:2382:-204.563,-10.9969,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:65:2,63:2:68:63:2201:-191.896,-13.1092,0	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:27:8,19:8:288:19:665:-52.045,0,-18.1396	0/1:76:37,39:37:1295:39:1381:-101.709,0,-93.9693	0/1:95:53,42:53:1896:42:1504:-107.057,0,-142.32	1/1:56:0,56:0:0:56:1990:-179.372,-16.8577,0	1/1:68:0,68:0:0:68:2431:-219.045,-20.47,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:70:1,69:1:36:69:2455:-217.606,-17.4738,0	0/1:84:44,40:44:1560:40:1436:-104.251,0,-115.405	1/1:65:0,65:0:0:65:2323:-209.33,-19.567,0	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	0/1:24:11,13:11:381:13:456:-34.1472,0,-27.3959	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:24:15,9:15:528:9:324:-22.2811,0,-40.6266	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	0/1:35:18,17:18:636:17:612:-44.8774,0,-47.032	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:72:31,41:31:1095:41:1472:-111.102,0,-77.1849	0/1:18:8,10:8:284:10:351:-26.5081,0,-20.4848	1/1:24:0,24:0:0:24:849:-76.7278,-7.22472,0	1/1:50:1,49:1:36:49:1751:-154.275,-11.4532,0
chr06	332457	.	GAC	AAT,GAT	414585	PASS	AB=0.544211,0.454131;ABP=125.894,135.284;AC=139,49;AF=0.739362,0.260638;AN=188;AO=12158,3326;CIGAR=1X1M1X,2M1X;DP=15505;DPB=15508.3;DPRA=168.511,1.16438;EPP=26395.1,7199.29;EPPR=0;GTI=3;LEN=3,1;MEANALT=1.86957,2.19355;MQM=50.9177,52.0316;MQMR=0;NS=94;NUMALT=2;ODDS=0.277208;PAIRED=0,0;PAIREDR=0;PAO=10,0;PQA=212,0;PQR=0;PRO=0;QA=427087,118826;QR=0;RO=0;RPL=5727,1747;RPP=91.5295,21.4371;RPPR=0;RPR=6431,1579;RUN=1,1;SAF=5726,1744;SAP=92.0332,20.1444;SAR=6432,1582;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:92:0,90,1:0:0:90,1:3123,36:-275.865,-27.0927,0,-273.033,-24.2094,-272.732	1/1:321:0,321,0:0:0:321,0:11356,0:-998.971,-96.6306,0,-998.971,-96.6306,-998.971	1/2:98:0,48,50:0:0:48,50:1674,1788:-274.575,-142.392,-127.942,-132.528,0,-117.476	1/1:336:0,335,1:0:0:335,1:11728,36:-1045.95,-100.845,0,-1043.06,-97.5976,-1042.76	1/2:123:0,60,63:0:0:60,63:2128,2252:-352.401,-181.117,-163.055,-171.635,0,-152.671	1/2:89:0,56,33:0:0:56,33:1981,1169:-252.845,-93.3982,-76.5405,-159.795,0,-149.861	1/2:288:0,181,107:0:0:181,107:6360,3828:-819.507,-308.146,-253.66,-511.712,0,-479.502	1/2:199:0,125,74:0:0:125,74:4342,2651:-557.384,-212.167,-174.538,-345.38,0,-323.103	1/2:213:0,107,106:0:0:107,106:3744,3787:-604.966,-307.362,-275.152,-297.953,0,-266.044	1/2:174:0,95,77:0:0:95,77:3328,2736:-490.095,-221.297,-192.699,-268.862,0,-245.683	1/2:207:0,103,104:0:0:103,104:3643,3728:-590.628,-297.784,-266.778,-293.194,0,-261.887	1/1:181:0,179,1:0:0:179,1:6269,36:-555.207,-53.8844,0,-552.269,-50.892,-551.968	1/2:169:0,79,89:0:0:79,89:2776,3194:-477.758,-255.087,-231.305,-222.741,0,-195.949	1/2:211:0,120,90:0:0:120,90:4214,3220:-592.76,-257.173,-221.05,-335.675,0,-308.582	1/1:131:0,131,0:0:0:131,0:4632,0:-413.953,-39.4349,0,-413.953,-39.4349,-413.953	1/2:151:0,76,75:0:0:76,75:2670,2670:-429.089,-214.932,-192.054,-214.506,0,-191.928	1/1:177:0,177,0:0:0:177,0:6288,0:-554.989,-53.2823,0,-554.989,-53.2823,-554.989	1/2:168:0,95,73:0:0:95,73:3348,2624:-477.453,-210.25,-181.652,-267.553,0,-245.578	1/1:154:0,153,0:0:0:153,0:5444,0:-480.35,-46.0576,0,-480.35,-46.0576,-480.35	1/1:344:0,343,1:0:0:343,1:12137,36:-1081.11,-103.253,0,-1078.17,-100.256,-1077.87	1/1:360:0,359,1:0:0:359,1:12653,36:-1123.45,-108.07,0,-1120.62,-105.244,-1120.32	1/1:123:0,123,0:0:0:123,0:4326,0:-387.874,-37.0267,0,-387.874,-37.0267,-387.874	1/2:153:0,86,66:0:0:86,66:3005,2359:-432.489,-191.02,-165.132,-241.539,0,-221.671	1/2:196:0,116,80:0:0:116,80:4092,2837:-559.058,-229.633,-194.713,-329.592,0,-305.509	1/1:132:0,131,0:0:0:131,0:4619,0:-408.885,-39.4349,0,-408.885,-39.4349,-408.885	1/2:266:0,148,117:0:0:148,117:5187,4164:-757.118,-337.942,-293.389,-419.248,0,-384.028	1/2:273:0,151,121:0:0:151,121:5326,4314:-778.043,-348.622,-303.167,-429.413,0,-392.988	1/1:71:0,71,0:0:0:71,0:2486,0:-218.769,-21.3731,0,-218.769,-21.3731,-218.769	1/2:201:0,108,93:0:0:108,93:3760,3312:-572.139,-268.336,-235.825,-304.153,0,-276.157	1/1:374:0,360,14:0:0:360,14:12605,504:-1107,-108.371,0,-1066.36,-67.7017,-1062.15	1/1:229:0,228,1:0:0:228,1:8020,36:-712.969,-68.6348,0,-710.031,-65.3376,-709.73	1/2:12:0,4,8:0:0:4,8:142,284:-34.9952,-23.4246,-22.2205,-11.9251,0,-9.51685	1/1:23:0,23,0:0:0:23,0:799,0:-71.0905,-6.92369,0,-71.0905,-6.92369,-71.0905	1/2:4:0,2,2:0:0:2,2:72,72:-11.7832,-6.12296,-5.5209,-6.01126,0,-5.4092	1/2:11:0,10,1:0:0:10,1:345,36:-30.1691,-3.17967,-0.169365,-27.3362,0,-27.0352	1/1:13:0,13,0:0:0:13,0:453,0:-40.4725,-3.91339,0,-40.4725,-3.91339,-40.4725	1/2:321:0,155,164:0:0:155,164:5476,5846:-917.035,-473.178,-426.518,-443.89,0,-394.521	1/2:130:0,58,72:0:0:58,72:2039,2572:-371.716,-207.444,-189.984,-164.623,0,-142.949	1/1:210:0,209,1:0:0:209,1:7329,36:-644.999,-62.9153,0,-642.065,-59.6217,-641.764	2/2:1:0,0,1:0:0:0,1:0,36:-3.52101,-3.52101,-3.52101,-0.30103,-0.30103,0	1/1:232:0,227,5:0:0:227,5:7952,176:-706.781,-68.3338,0,-692.482,-53.6838,-690.977	1/2:114:0,58,55:0:0:58,55:2054,1980:-322.405,-158.564,-141.104,-163.852,0,-147.295	1/2:118:0,72,46:0:0:72,46:2538,1652:-335.13,-131.987,-110.312,-203.493,0,-189.646	1/2:184:0,98,86:0:0:98,86:3424,3077:-524.48,-248.122,-218.621,-276.709,0,-250.821	1/2:127:0,60,66:0:0:60,66:2125,2363:-362.534,-191.019,-172.957,-171.513,0,-151.645	1/2:158:0,92,66:0:0:92,66:3219,2334:-450.046,-189.821,-162.126,-260.576,0,-240.708	1/1:158:0,158,0:0:0:158,0:5557,0:-491.838,-47.5627,0,-491.838,-47.5627,-491.838	1/1:240:0,240,0:0:0:240,0:8472,0:-756.469,-72.2472,0,-756.469,-72.2472,-756.469	1/1:232:0,232,0:0:0:232,0:8164,0:-730.038,-69.839,0,-730.038,-69.839,-730.038	1/1:247:0,246,0:0:0:246,0:8645,0:-771.936,-74.0534,0,-771.936,-74.0534,-771.936	1/2:242:0,169,73:0:0:169,73:5910,2616:-691.2,-213.032,-162.158,-478.522,0,-456.547	1/1:11:0,11,0:0:0:11,0:390,0:-35.0303,-3.31133,0,-35.0303,-3.31133,-35.0303	1/1:219:0,219,0:0:0:219,0:7674,0:-670.518,-65.9256,0,-670.518,-65.9256,-670.518	1/2:68:0,36,32:0:0:36,32:1254,1133:-192.943,-91.9043,-81.0672,-101.387,0,-91.7542	1/1:15:0,15,0:0:0:15,0:532,0:-46.4406,-4.51545,0,-46.4406,-4.51545,-4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chr06	332480	.	CGAT	AGAT,TGAC	165002	PASS	AB=0.564485,0.431373;ABP=133.796,151.139;AC=138,48;AF=0.741935,0.258065;AN=186;AO=6370,1583;CIGAR=1X3M,1X2M1X;DP=7984;DPB=7984.5;DPRA=87.7143,1.05584;EPP=13835.3,3440.45;EPPR=0;GTI=4;LEN=1,4;MEANALT=1.89011,2.25455;MQM=42.8991,43.1642;MQMR=0;NS=93;NUMALT=2;ODDS=2.09085;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,72;PQR=0;PRO=0;QA=227424,55769;QR=0;RO=0;RPL=6370,1583;RPP=13835.3,3440.45;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13835.3,3440.45;SAR=6370,1583;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:58:0,57,1:0:0:57,1:2032,36:-176.356,-17.1587,0,-173.525,-13.979,-173.224	1/1:204:0,203,0:0:0:203,0:7277,0:-631.05,-61.1091,0,-631.05,-61.1091,-631.05	1/2:63:0,26,36:0:0:26,36:931,1271:-172.814,-100.008,-92.1813,-72.9064,0,-62.0694	1/1:152:0,151,1:0:0:151,1:5371,36:-474.18,-45.4555,0,-471.287,-42.208,-470.986	1/2:60:0,32,28:0:0:32,28:1152,980:-169.182,-77.4259,-67.7929,-92.1011,0,-83.6722	1/2:36:0,18,18:0:0:18,18:640,628:-99.8106,-49.5251,-44.1065,-50.6259,0,-45.2074	1/2:148:0,92,54:0:0:92,54:3273,1901:-412.306,-150.898,-123.203,-261.428,0,-245.172	1/2:100:0,68,31:0:0:68,31:2426,1104:-276.517,-86.738,-66.2679,-189.846,0,-180.514	1/2:59:0,46,13:0:0:46,13:1614,454:-161.763,-35.8069,-21.9595,-126.293,0,-122.38	1/2:71:0,42,29:0:0:42,29:1488,1023:-201.512,-82.3181,-69.6749,-119.542,0,-110.812	1/2:149:0,71,78:0:0:71,78:2530,2774:-423.255,-220.634,-199.261,-202.969,0,-179.489	1/1:78:0,77,0:0:0:77,0:2740,0:-237.759,-23.1793,0,-237.759,-23.1793,-237.759	1/2:79:0,36,43:0:0:36,43:1296,1525:-220.485,-118.712,-107.875,-101.759,0,-88.8145	1/2:159:0,91,68:0:0:91,68:3237,2395:-446.347,-189.738,-162.344,-256.953,0,-236.483	1/1:50:0,50,0:0:0:50,0:1785,0:-158.07,-15.0515,0,-158.07,-15.0515,-158.07	1/2:80:0,40,40:0:0:40,40:1430,1420:-226.827,-113.267,-101.226,-113.907,0,-101.866	1/1:101:0,101,0:0:0:101,0:3628,0:-315.596,-30.404,0,-315.596,-30.404,-315.596	1/2:75:0,45,29:0:0:45,29:1606,1038:-207.371,-81.4332,-67.8869,-126.006,0,-117.276	1/1:64:0,63,0:0:0:63,0:2236,0:-193.458,-18.9649,0,-193.458,-18.9649,-193.458	1/1:191:0,189,0:0:0:189,0:6763,0:-598.536,-56.8947,0,-598.536,-56.8947,-598.536	1/1:186:0,185,1:0:0:185,1:6594,36:-579.387,-55.6906,0,-576.556,-52.5109,-576.254	1/1:51:0,50,0:0:0:50,0:1800,0:-160.519,-15.0515,0,-160.519,-15.0515,-160.519	1/2:92:0,60,31:0:0:60,31:2140,1092:-258.87,-87.6033,-69.5415,-171.256,0,-161.924	1/2:68:0,50,18:0:0:50,18:1782,642:-192.559,-51.0496,-35.9981,-141.857,0,-136.438	1/1:63:0,63,0:0:0:63,0:2231,0:-195.74,-18.9649,0,-195.74,-18.9649,-195.74	1/2:100:0,62,37:0:0:62,37:2208,1296:-281.382,-104.499,-85.8353,-176.911,0,-165.773	1/2:100:0,61,39:0:0:61,39:2185,1356:-281.376,-107.676,-89.3129,-174.044,0,-162.304	1/1:38:0,38,0:0:0:38,0:1338,0:-116.613,-11.4391,0,-116.613,-11.4391,-116.613	1/2:106:0,54,52:0:0:54,52:1912,1839:-301.976,-148.21,-131.954,-154.116,0,-138.463	1/1:305:0,298,7:0:0:298,7:10594,252:-928.535,-89.7069,0,-908.459,-69.2797,-906.352	1/1:137:0,137,0:0:0:137,0:4888,0:-432.562,-41.2411,0,-432.562,-41.2411,-432.562	2/2:1:0,0,1:0:0:0,1:0,36:-3.52101,-3.52101,-3.52101,-0.30103,-0.30103,0	1/1:18:0,16,0:0:0:16,0:576,0:-50.6295,-4.81648,0,-50.6295,-4.81648,-50.6295	1/2:3:0,2,1:0:0:2,1:72,36:-8.84286,-3.17967,-2.57761,-6.01126,0,-5.71023	1/1:10:0,9,1:0:0:9,1:324,30:-28.2399,-2.70927,0,-25.8759,-0.0434637,-25.5749	1/1:6:0,6,0:0:0:6,0:216,0:-19.0585,-1.80618,0,-19.0585,-1.80618,-19.0585	1/2:136:0,70,66:0:0:70,66:2510,2346:-390.466,-188.196,-167.124,-202.622,0,-182.754	1/2:48:0,22,26:0:0:22,26:786,921:-134.388,-72.0302,-65.4075,-62.702,0,-54.8753	1/1:121:0,120,0:0:0:120,0:4295,0:-372.268,-36.1236,0,-372.268,-36.1236,-372.268	2/2:1:0,0,1:0:0:0,1:0,36:-3.52101,-3.52101,-3.52101,-0.30103,-0.30103,0	1/1:110:0,109,1:0:0:109,1:3892,36:-341.365,-32.8123,0,-338.497,-29.5923,-338.196	1/2:64:0,31,33:0:0:31,33:1104,1146:-177.759,-90.8746,-81.5426,-87.2261,0,-77.2921	1/2:84:0,53,31:0:0:53,31:1908,1083:-237.304,-85.4109,-69.4564,-152.236,0,-142.904	1/2:79:0,43,36:0:0:43,36:1540,1281:-226.241,-103.075,-90.1309,-123.516,0,-112.679	1/2:59:0,26,33:0:0:26,33:932,1155:-167.382,-92.8892,-85.0625,-74.8417,0,-64.9077	1/2:63:0,37,24:0:0:37,24:1326,858:-176.197,-69.3541,-58.2159,-106.883,0,-99.6579	1/1:82:0,82,0:0:0:82,0:2944,0:-256.255,-24.6845,0,-256.255,-24.6845,-256.255	1/1:121:0,121,0:0:0:121,0:4332,0:-383.81,-36.4246,0,-383.81,-36.4246,-383.81	1/1:91:0,91,0:0:0:91,0:3222,0:-285.562,-27.3937,0,-285.562,-27.3937,-285.562	1/1:95:0,95,0:0:0:95,0:3391,0:-299.999,-28.5979,0,-299.999,-28.5979,-299.999	1/2:93:0,69,24:0:0:69,24:2467,837:-266.081,-67.8233,-47.0522,-198.606,0,-191.381	1/1:10:0,10,0:0:0:10,0:356,0:-31.955,-3.0103,0,-31.955,-3.0103,-31.955	1/1:151:0,150,0:0:0:150,0:5341,0:-462.682,-45.1545,0,-462.682,-45.1545,-462.682	1/2:61:0,34,27:0:0:34,27:1220,954:-175.756,-77.33,-67.0949,-98.7789,0,-90.6511	1/1:8:0,8,0:0:0:8,0:277,0:-24.1552,-2.40824,0,-24.1552,-2.40824,-24.1552	1/2:118:0,67,51:0:0:67,51:2389,1798:-332.652,-142.736,-122.567,-190.262,0,-174.909	1/1:51:0,51,0:0:0:51,0:1824,0:-161.79,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chr06	350125	.	TTCG	TTCA	156255	PASS	AB=0.479267;ABP=22.3693;AC=138;AF=0.734043;AN=188;AO=7468;CIGAR=3M1X;DP=10219;DPB=10219.2;DPRA=74.029;EPP=16210.9;EPPR=5872.51;GTI=0;LEN=1;MEANALT=1.34783;MQM=59.9969;MQMR=59.9978;NS=94;NUMALT=1;ODDS=1.04476;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=0;PRO=0;QA=267206;QR=95474;RO=2711;RPL=0;RPP=16219.6;RPPR=5881.19;RPR=7468;RUN=1;SAF=7467;SAP=16210.9;SAR=1;SRF=2710;SRP=5881.19;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:79:0,79:0:0:79:2802:-252.418,-23.7814,0	0/1:215:121,94:121:4276:94:3333:-235.464,0,-320.301	1/1:305:2,301:2:72:301:10791:-964.252,-84.7352,0	0/1:71:34,37:34:1213:37:1317:-97.4567,0,-88.1031	0/1:15:7,8:7:251:8:284:-21.3879,0,-18.4224	0/1:107:60,47:60:2111:47:1688:-119.997,0,-158.048	0/1:182:92,90:92:3238:90:3205:-233.885,0,-236.856	0/1:118:73,44:73:2574:44:1557:-104.839,0,-196.33	0/1:99:48,51:48:1705:51:1828:-134.999,0,-123.934	0/1:59:22,37:22:774:37:1332:-102.422,0,-52.2203	1/1:118:0,117:0:0:117:4186:-376.56,-35.2205,0	0/1:66:38,27:38:1362:27:947:-65.6165,0,-102.954	0/1:98:45,53:45:1570:53:1885:-140.426,0,-112.088	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:69:33,35:33:1176:35:1218:-89.1286,0,-85.3568	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:25:12,13:12:429:13:468:-34.9339,0,-31.4239	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:203:0,202:0:0:202:7221:-649.663,-60.8081,0	1/1:159:0,156:0:0:156:5600:-503.767,-46.9607,0	1/1:186:1,185:1:35:185:6594:-590.042,-52.493,0	0/1:153:74,79:74:2617:79:2821:-208.07,0,-189.72	0/1:65:25,40:25:890:40:1424:-108.891,0,-60.8522	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	0/1:373:194,177:194:6824:177:6345:-459.101,0,-502.203	0/1:276:145,131:145:5120:131:4700:-340.075,0,-377.861	1/1:24:0,23:0:0:23:819:-73.7293,-6.92369,0	0/1:412:221,190:221:7756:190:6832:-490.863,0,-574.006	1/1:168:12,154:12:422:154:5513:-457.994,-11.9121,0	1/1:217:1,216:1:36:216:7728:-691.94,-61.7252,0	0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64733	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:29:20,9:20:698:9:324:-20.776,0,-54.4121	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:188:99,86:99:3506:86:3092:-222.456,0,-259.701	0/1:176:70,106:70:2479:106:3796:-288.857,0,-170.383	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:147:2,144:2:65:144:5134:-456.016,-38.1253,0	0/1:27:15,12:15:525:12:432:-31.0934,0,-39.4519	0/1:109:57,52:57:1982:52:1841:-133.154,0,-145.84	0/1:46:27,19:27:968:19:665:-46.3254,0,-73.59	0/1:57:22,35:22:760:35:1250:-95.646,0,-51.5582	0/1:156:75,80:75:2646:80:2880:-212.517,0,-191.468	1/1:105:0,105:0:0:105:3754:-338.06,-31.6082,0	1/1:279:0,279:0:0:279:9987:-898.767,-83.9874,0	1/1:108:0,108:0:0:108:3872:-348.674,-32.5112,0	1/1:141:0,141:0:0:141:5038:-453.563,-42.4452,0	0/1:145:76,68:76:2664:68:2444:-176.506,0,-196.299	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:145:0,145:0:0:145:5185:-466.788,-43.6494,0	0/1:108:51,57:51:1807:57:2036:-151.001,0,-130.399	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:180:96,83:96:3375:83:2968:-213.109,0,-249.724	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:4:3,1:3:107:1:36:-2.39415,0,-8.77805	0/1:37:12,25:12:428:25:892:-69.4616,0,-27.7209	1/1:86:0,81:0:0:81:2859:-257.185,-24.3834,0	0/1:117:71,46:71:2518:46:1652:-113.748,0,-191.652	0/1:8:4,4:4:134:4:144:-10.9054,0,-9.98181	1/1:263:2,261:2:72:261:9356:-835.166,-72.3342,0	1/1:213:0,211:0:0:211:7572:-681.256,-63.5173,0	1/1:53:0,52:0:0:52:1845:-166.017,-15.6536,0	1/1:105:0,105:0:0:105:3753:-337.969,-31.6082,0	0/1:254:124,127:124:4339:127:4537:-332.597,0,-314.792	1/1:151:2,147:2:72:147:5268:-467.463,-38.3316,0	0/1:41:22,19:22:783:19:680:-49.1869,0,-58.452	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:31:0,31:0:0:31:1110:-100.211,-9.33193,0	0/1:19:5,13:5:165:13:468:-36.6813,0,-9.4011	1/1:197:0,197:0:0:197:7064:-635.819,-59.3029,0	0/1:80:34,46:34:1174:46:1644:-124.166,0,-81.8801	0/1:237:125,112:125:4343:112:4012:-289.925,0,-319.707	0/1:157:89,68:89:3147:68:2444:-172.953,0,-236.194	1/1:74:0,73:0:0:73:2606:-234.476,-21.9752,0	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	1/1:117:0,117:0:0:117:4182:-376.56,-35.2205,0	1/1:158:1,157:1:36:157:5600:-500.527,-43.9645,0	0/1:219:119,99:119:4216:99:3540:-252.825,0,-313.639	1/1:60:0,59:0:0:59:2116:-190.349,-17.7608,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	0/1:50:30,20:30:1030:20:716:-49.7162,0,-77.9531	1/1:128:1,127:1:36:127:4538:-404.987,-34.9336,0	0/1:19:11,8:11:393:8:288:-20.5478,0,-29.9912	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:92:45,47:45:1592:47:1684:-124.152,0,-115.875	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:123:71,52:71:2503:52:1868:-131.373,0,-188.495	0/1:68:50,18:50:1742:18:644:-37.8206,0,-136.592	1/1:113:0,113:0:0:113:4056:-365.226,-34.0164,0	1/1:116:1,115:1:36:115:4128:-368.105,-31.3212,0
chr06	361588	.	G	A	109200	PASS	AB=0.530748;ABP=75.6552;AC=50;AF=0.265957;AN=188;AO=4745;CIGAR=1X;DP=16917;DPB=16917;DPRA=1.17918;EPP=10306.6;EPPR=26410.3;GTI=1;LEN=1;MEANALT=1.10606;MQM=59.9867;MQMR=59.9955;NS=94;NUMALT=1;ODDS=5.82762;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169075;QR=424369;RO=12161;RPL=2442;RPP=11.8522;RPPR=37.7369;RPR=2303;RUN=1;SAF=2442;SAP=11.8522;SAR=2303;SRF=6301;SRP=37.7369;SRR=5860;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:84:84,0:84:2893:0:0:0,-25.2865,-260.609	0/0:229:227,1:227:8020:1:36:0,-65.3964,-718.232	0/1:248:124,124:124:4274:124:4452:-326.194,0,-310.191	0/0:294:292,2:292:10185:2:72:0,-81.6661,-909.771	0/1:153:80,73:80:2836:73:2606:-188.731,0,-209.423	0/1:87:36,51:36:1264:51:1815:-137.441,0,-87.8702	0/1:248:102,145:102:3522:145:5146:-388.62,0,-242.569	0/1:280:159,121:159:5555:121:4304:-303.249,0,-415.8	0/1:182:84,98:84:2896:98:3469:-257.633,0,-206.091	0/1:141:59,82:59:2085:82:2929:-221.399,0,-145.474	0/1:167:76,91:76:2685:91:3210:-238.851,0,-191.623	0/0:212:211,1:211:7277:1:36:0,-60.2201,-651.409	0/1:153:91,62:91:3204:62:2196:-151.846,0,-242.527	0/1:222:102,120:102:3579:120:4258:-316.57,0,-255.492	0/0:114:111,2:111:3820:2:72:0,-27.5129,-337.178	0/1:216:117,99:117:4083:99:3516:-251.627,0,-302.639	0/0:181:181,0:181:6352:0:0:0,-54.4864,-571.782	0/1:70:40,30:40:1398:30:1072:-75.7204,0,-105.043	0/0:86:86,0:86:3048:0:0:0,-25.8886,-274.552	0/0:262:262,0:262:9148:0:0:0,-78.8699,-823.314	0/0:283:283,0:283:9867:0:0:0,-85.1915,-888	0/0:195:195,0:195:6751:0:0:0,-58.7008,-607.679	0/1:129:45,84:45:1540:84:2972:-228.88,0,-100.052	0/1:130:48,82:48:1703:82:2944:-226.06,0,-114.421	0/0:131:129,2:129:4444:2:72:0,-32.5982,-393.303	0/1:511:235,276:235:8176:276:9820:-729.863,0,-582.049	0/1:429:187,242:187:6573:242:8616:-646.294,0,-462.521	0/0:75:75,0:75:2630:0:0:0,-22.5772,-236.946	0/1:495:251,244:251:8733:244:8697:-633.715,0,-636.967	0/0:250:240,10:240:8465:10:360:0,-42.5132,-729.119	0/0:164:161,2:161:5637:2:72:0,-42.591,-500.625	0/1:18:9,9:9:311:9:324:-24.0873,0,-22.9052	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/1:21:14,7:14:476:7:248:-16.3426,0,-36.8403	0/0:26:26,0:26:903:0:0:0,-7.82678,-81.5838	0/1:448:212,236:212:7341:236:8434:-624.156,0,-525.9	0/1:300:127,173:127:4477:173:6158:-464.009,0,-312.793	0/0:158:158,0:158:5514:0:0:0,-47.5627,-496.397	1/1:6:0,6:0:0:6:199:-18.2355,-1.80618,0	0/0:195:190,5:190:6589:5:180:0,-42.1488,-576.552	0/1:81:33,48:33:1102:48:1720:-130.702,0,-75.0923	0/1:315:174,140:174:6092:140:4981:-353.557,0,-453.511	0/1:146:64,81:64:2254:81:2889:-216.236,0,-159.114	0/1:150:75,75:75:2591:75:2669:-195.3,0,-188.284	0/1:198:84,114:84:2946:114:4064:-306.344,0,-205.773	0/0:208:208,0:208:7208:0:0:0,-62.6142,-648.795	0/0:280:280,0:280:9781:0:0:0,-84.2884,-880.261	0/0:138:138,0:138:4835:0:0:0,-41.5421,-435.313	0/0:243:242,1:242:8472:1:36:0,-69.552,-758.898	0/1:217:97,120:97:3439:120:4295:-321.403,0,-244.402	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/0:246:246,0:246:8597:0:0:0,-74.0534,-773.745	0/1:126:70,56:70:2454:56:1990:-141.443,0,-183.183	0/1:22:8,14:8:284:14:504:-39.0754,0,-19.2807	0/1:229:104,125:104:3583:125:4426:-329.573,0,-253.748	0/0:63:61,2:61:2148:2:68:0,-12.5072,-187.128	0/1:13:5,8:5:172:8:288:-22.354,0,-11.9046	0/1:28:15,13:15:527:13:464:-33.6687,0,-39.3313	0/0:166:164,0:164:5769:0:0:0,-49.3689,-518.994	0/1:296:137,159:137:4777:159:5674:-421.674,0,-340.906	0/1:14:6,8:6:212:8:282:-21.5067,0,-15.2104	0/0:300:297,2:297:10506:2:72:0,-83.5311,-938.632	0/0:330:329,1:329:11416:1:36:0,-95.7416,-1023.75	0/0:126:125,0:125:4388:0:0:0,-37.6287,-394.74	0/0:160:159,1:159:5491:1:36:0,-44.5665,-490.733	0/1:290:119,171:119:4129:171:6110:-462.702,0,-284.502	0/0:193:192,1:192:6719:1:36:0,-54.5005,-601.199	0/1:114:46,68:46:1624:68:2412:-183.017,0,-112.129	0/0:123:123,0:123:4273:0:0:0,-37.0267,-384.755	0/0:155:155,0:155:5416:0:0:0,-46.6596,-487.578	0/1:42:27,15:27:952:15:536:-35.9316,0,-73.3519	0/0:196:196,0:196:6809:0:0:0,-59.0019,-612.903	0/1:164:80,84:80:2767:84:2984:-219.422,0,-199.903	0/1:282:117,165:117:4129:165:5877:-444.15,0,-286.851	0/1:294:144,150:144:4983:150:5371:-395.018,0,-360.122	0/0:354:350,4:350:12201:4:140:0,-93.62,-1085.02	0/0:183:178,5:178:6198:5:180:0,-38.5364,-541.376	0/1:33:15,18:15:532:18:644:-48.3566,0,-38.2791	0/0:174:172,2:172:6046:2:72:0,-45.5425,-537.414	0/0:187:186,0:186:6501:0:0:0,-55.9916,-584.823	0/1:290:145,145:145:5027:145:5208:-381.558,0,-365.286	0/0:161:161,0:161:5640:0:0:0,-48.4658,-507.731	0/0:127:127,0:127:4465:0:0:0,-38.2308,-402.027	0/1:146:61,85:61:2145:85:3030:-228.979,0,-149.366	0/0:292:292,0:292:10098:0:0:0,-87.9008,-908.788	0/1:54:27,27:27:935:27:972:-71.5423,0,-68.2038	0/0:159:159,0:159:5493:0:0:0,-47.8638,-494.509	0/1:188:106,82:106:3714:82:2931:-207.43,0,-277.871	0/0:131:131,0:131:4614:0:0:0,-39.4349,-415.426	0/1:314:147,167:147:5144:167:5933:-439.559,0,-368.587	0/1:140:39,101:39:1362:101:3612:-283.14,0,-80.7326	0/0:145:145,0:145:5020:0:0:0,-43.6493,-451.954	0/0:242:242,0:242:8388:0:0:0,-72.8493,-754.952
chr06	371266	.	A	T	32084.9	PASS	AB=0.497262;ABP=3.26001;AC=48;AF=0.255319;AN=188;AO=1918;CIGAR=1X;DP=7443;DPB=7443;DPRA=1.15583;EPP=4159.21;EPPR=11863.9;GTI=0;LEN=1;MEANALT=1.03704;MQM=59.9823;MQMR=59.9933;NS=94;NUMALT=1;ODDS=0.272246;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68572;QR=197832;RO=5522;RPL=1917;RPP=4159.21;RPPR=11863.9;RPR=1;RUN=1;SAF=0;SAP=4167.89;SAR=1918;SRF=0;SRP=11993.9;SRR=5522;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.97	0/1:98:51,47:51:1798:47:1680:-121.986,0,-132.597	0/0:127:126,1:126:4528:1:36:0,-34.6325,-404.087	0/1:69:28,41:28:1008:41:1443:-109.391,0,-70.2653	0/1:37:19,18:19:684:18:644:-47.1525,0,-50.7522	0/1:85:49,36:49:1745:36:1288:-90.636,0,-131.745	0/1:134:75,59:75:2662:59:2075:-146.677,0,-199.485	0/1:77:24,53:24:860:53:1884:-146.658,0,-54.5425	0/1:96:56,40:56:2004:40:1426:-99.7382,0,-151.735	0/1:99:42,57:42:1512:57:2040:-154.07,0,-106.573	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:71:42,29:42:1512:29:1008:-69.6541,0,-115.001	0/1:80:42,38:42:1508:38:1364:-98.9783,0,-111.705	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:50:27,23:27:972:23:824:-59.4318,0,-72.7464	0/0:95:94,0:94:3376:0:0:0,-28.2968,-303.695	0/1:65:36,29:36:1288:29:1044:-74.7079,0,-96.6566	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:105:105,0:105:3752:0:0:0,-31.6081,-337.881	0/0:103:103,0:103:3679:0:0:0,-31.0061,-331.313	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:49:16,33:16:576:33:1176:-91.3973,0,-37.4245	0/1:106:57,49:57:2044:49:1764:-127.135,0,-152.323	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:250:135,115:135:4852:115:4097:-293.656,0,-361.574	0/1:156:81,75:81:2904:75:2688:-195.204,0,-214.635	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:138:75,63:75:2673:63:2260:-162.12,0,-199.272	0/0:94:90,4:90:3223:4:144:0,-14.9832,-276.978	0/0:83:83,0:83:2952:0:0:0,-24.9855,-265.912	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:6:4,2:4:144:2:68:-4.64404,0,-11.5074	0/1:17:11,6:11:388:6:216:-14.673,0,-30.1399	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:188:93,95:93:3344:95:3420:-251.419,0,-244.582	0/1:83:38,45:38:1360:45:1605:-119.753,0,-97.7151	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:132:130,2:130:4651:2:72:0,-32.8992,-411.915	0/1:41:26,15:26:932:15:540:-36.5943,0,-71.8566	0/1:110:54,56:54:1940:56:1997:-146.889,0,-141.763	0/1:95:48,47:48:1724:47:1692:-123.969,0,-126.848	0/1:71:42,29:42:1512:29:1044:-72.9017,0,-115.001	0/1:63:37,26:37:1328:26:932:-65.234,0,-100.857	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:138:138,0:138:4929:0:0:0,-41.5421,-443.76	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/1:96:46,50:46:1644:50:1791:-132.574,0,-119.35	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:97:96,1:96:3452:1:32:0,-26.0006,-307.692	0/1:48:21,27:21:756:27:972:-73.3485,0,-53.9178	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:88:49,38:49:1743:38:1349:-95.159,0,-130.604	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:21:9,12:9:324:12:428:-32.5372,0,-23.1842	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.622	0/1:117:53,64:53:1904:64:2300:-172.04,0,-136.417	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:105:105,0:105:3763:0:0:0,-31.6081,-338.868	0/0:165:165,0:165:5920:0:0:0,-49.6699,-532.907	0/0:65:65,0:65:2314:0:0:0,-19.5669,-208.519	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:110:50,60:50:1800:60:2160:-161.553,0,-129.169	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.322	0/1:57:26,31:26:936:31:1116:-83.593,0,-67.4008	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.134	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:66:29,37:29:1040:37:1332:-100.314,0,-74.0464	0/1:170:82,88:82:2936:88:3126:-230.389,0,-213.299	0/1:114:49,64:49:1760:64:2287:-171.699,0,-124.308	0/0:90:90,0:90:3223:0:0:0,-27.0927,-290.291	0/0:133:133,0:133:4775:0:0:0,-40.037,-429.905	0/1:16:9,7:9:306:7:244:-17.4829,0,-23.0521	0/0:127:127,0:127:4551:0:0:0,-38.2308,-409.755	0/0:105:105,0:105:3755:0:0:0,-31.6081,-338.138	0/1:183:84,99:84:2995:99:3541:-263.809,0,-214.694	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/1:93:46,47:46:1656:47:1692:-124.571,0,-121.333	0/0:141:139,2:139:4971:2:72:0,-35.6085,-440.702	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/1:80:48,32:48:1728:32:1152:-79.9077,0,-131.723	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:95:48,47:48:1720:47:1686:-123.429,0,-126.488	0/1:73:24,49:24:855:49:1741:-134.997,0,-55.295	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:110:109,1:109:3901:1:36:0,-29.515,-347.684
chr06	392547	.	TTCAT	ATCAA,TTCAA	177473	PASS	AB=0.496163,0.498561;ABP=3.54353,3.08529;AC=137,51;AF=0.728723,0.271277;AN=188;AO=6295,2103;CIGAR=1X3M1X,4M1X;DP=8438;DPB=8437.6;DPRA=45.837,1.01505;EPP=13663.7,4569.62;EPPR=0;GTI=1;LEN=5,1;MEANALT=2.04348,2.41667;MQM=59.919,59.942;MQMR=0;NS=94;NUMALT=2;ODDS=0.785263;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=221836,74817;QR=0;RO=0;RPL=6294,2103;RPP=13663.7,4569.62;RPPR=0;RPR=1,0;RUN=1,1;SAF=6295,2103;SAP=13672.4,4569.62;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41,0:0:0:41,0:1446,0:-130.436,-12.3422,0,-130.436,-12.3422,-130.436	1/1:63:0,63,0:0:0:63,0:2219,0:-199.975,-18.9649,0,-199.975,-18.9649,-199.975	1/2:172:0,80,91:0:0:80,91:2806,3240:-492.532,-264.186,-240.104,-228.457,0,-201.064	1/1:248:0,246,1:0:0:246,1:8682,36:-781.028,-74.0534,0,-778.091,-71.116,-777.79	1/2:31:0,17,14:0:0:17,14:591,504:-89.5269,-41.4837,-36.3662,-48.3975,0,-44.1831	1/2:25:0,15,10:0:0:15,10:533,352:-72.4428,-29.0079,-24.4924,-43.7881,0,-40.7778	1/2:120:0,65,55:0:0:65,55:2310,1952:-347.636,-159.397,-139.83,-188.594,0,-172.037	1/2:65:0,29,36:0:0:29,36:1042,1296:-191.112,-106.107,-97.377,-85.3649,0,-74.5278	1/2:65:0,29,36:0:0:29,36:1029,1270:-187.043,-103.203,-94.4729,-84.193,0,-73.3559	1/2:96:0,40,55:0:0:40,55:1412,1953:-274.169,-159.186,-147.144,-115.035,0,-98.4786	1/2:41:0,19,22:0:0:19,22:670,779:-118.362,-63.8094,-58.0898,-54.9058,0,-48.2832	1/1:82:0,82,0:0:0:82,0:2902,0:-261.418,-24.6845,0,-261.418,-24.6845,-261.418	1/2:109:0,55,54:0:0:55,54:1963,1927:-317.482,-157.45,-140.894,-160.388,0,-144.132	1/2:67:0,28,36:0:0:28,36:998,1287:-186.321,-104.97,-96.541,-81.38,0,-70.5429	1/1:46:0,45,0:0:0:45,0:1610,0:-144.879,-13.5464,0,-144.879,-13.5464,-144.879	1/2:52:0,25,27:0:0:25,27:894,972:-152.566,-79.6701,-72.1443,-73.2542,0,-65.1264	1/1:34:0,32,1:0:0:32,1:1140,36:-102.616,-9.63296,0,-99.678,-6.62563,-99.3769	1/2:32:0,18,14:0:0:18,14:630,504:-92.7351,-41.4837,-36.0651,-51.6069,0,-47.3925	1/1:29:0,29,0:0:0:29,0:1014,0:-91.5712,-8.72987,0,-91.5712,-8.72987,-91.5712	1/1:161:0,160,0:0:0:160,0:5678,0:-510.781,-48.1648,0,-510.781,-48.1648,-510.781	1/1:145:0,145,0:0:0:145,0:5146,0:-463.284,-43.6494,0,-463.284,-43.6494,-463.284	1/1:80:0,78,0:0:0:78,0:2765,0:-248.801,-23.4803,0,-248.801,-23.4803,-248.801	1/2:94:0,50,44:0:0:50,44:1771,1575:-273.06,-128.795,-113.744,-144.62,0,-131.375	1/2:60:0,35,25:0:0:35,25:1235,892:-173.635,-73.0739,-62.5379,-100.916,0,-93.3903	1/1:41:0,40,0:0:0:40,0:1417,0:-127.554,-12.0412,0,-127.554,-12.0412,-127.554	1/2:191:0,80,110:0:0:80,110:2814,3925:-549.113,-320.048,-295.966,-229.137,0,-196.024	1/2:134:0,82,52:0:0:82,52:2911,1837:-387.144,-149.955,-125.271,-237.543,0,-221.889	1/1:65:0,63,1:0:0:63,1:2225,36:-200.154,-18.9649,0,-197.216,-16.0275,-196.915	1/2:286:0,159,126:0:0:159,126:5577,4493:-820.037,-366.244,-318.38,-453.787,0,-415.857	1/1:86:0,80,6:0:0:80,6:2810,212:-252.782,-24.0824,0,-235.517,-6.46378,-233.71	1/1:77:0,77,0:0:0:77,0:2697,0:-242.971,-23.1793,0,-242.971,-23.1793,-242.971	1/2:6:0,4,2:0:0:4,2:144,72:-17.9843,-6.23466,-5.03054,-12.1095,0,-11.5074	1/1:13:0,13,0:0:0:13,0:461,0:-41.826,-3.91339,0,-41.826,-3.91339,-41.826	1/2:7:0,5,1:0:0:5,1:172,36:-16.9374,-2.9625,-1.45735,-13.9969,0,-13.6959	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:5:0,5,0:0:0:5,0:179,0:-16.4604,-1.50515,0,-16.4604,-1.50515,-16.4604	1/2:201:0,102,99:0:0:102,99:3603,3508:-579.548,-286.129,-255.424,-293.773,0,-263.971	1/2:105:0,42,63:0:0:42,63:1493,2233:-303.929,-182.262,-169.619,-122.021,0,-103.056	1/1:28:0,28,0:0:0:28,0:998,0:-90.1354,-8.42884,0,-90.1354,-8.42884,-90.1354	2/2:2:0,0,2:0:0:0,2:0,68:-6.45771,-6.45771,-6.45771,-0.60206,-0.60206,0	1/1:113:0,112,1:0:0:112,1:3975,36:-357.581,-33.7154,0,-354.643,-30.4181,-354.342	1/2:26:0,14,12:0:0:14,12:502,432:-76.5526,-35.6088,-31.3944,-41.3029,0,-37.6905	1/2:96:0,45,51:0:0:45,51:1594,1828:-279.296,-149.448,-135.902,-130.204,0,-114.851	1/2:41:0,21,20:0:0:21,20:748,720:-120.074,-59.1082,-52.7865,-61.3236,0,-55.303	1/2:93:0,51,40:0:0:51,40:1817,1440:-265.651,-117.549,-102.197,-148.152,0,-136.111	1/2:66:0,31,35:0:0:31,35:1096,1232:-189.91,-100.645,-91.3133,-89.6177,0,-79.0816	1/1:118:0,118,0:0:0:118,0:4062,0:-365.741,-35.5215,0,-365.741,-35.5215,-365.741	1/1:223:0,221,0:0:0:221,0:7786,0:-700.425,-66.5276,0,-700.425,-66.5276,-700.425	1/1:141:0,139,2:0:0:139,2:4883,72:-439.263,-41.8432,0,-433.388,-35.6085,-432.786	1/1:135:0,135,0:0:0:135,0:4757,0:-428.291,-40.6391,0,-428.291,-40.6391,-428.291	1/2:137:0,63,74:0:0:63,74:2233,2644:-397.844,-215.93,-196.965,-182.269,0,-159.993	1/1:8:0,8,0:0:0:8,0:287,0:-26.1765,-2.40824,0,-26.1765,-2.40824,-26.1765	1/1:78:0,77,0:0:0:77,0:2690,0:-242.04,-23.1793,0,-242.04,-23.1793,-242.04	1/2:69:0,31,38:0:0:31,38:1089,1364:-200.253,-111.622,-102.29,-88.9859,0,-77.5467	1/2:14:0,8,5:0:0:8,5:286,180:-38.0519,-14.7287,-12.3204,-23.362,0,-21.8569	1/2:246:0,123,122:0:0:123,122:4265,4334:-699.774,-353.141,-316.114,-346.624,0,-309.899	1/1:26:0,24,2:0:0:24,2:841,72:-75.6489,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chr06	392556	.	A	G	35566	PASS	AB=0.512166;ABP=8.34665;AC=51;AF=0.271277;AN=188;AO=2149;CIGAR=1X;DP=8292;DPB=8292;DPRA=0.958999;EPP=4669.5;EPPR=13333.7;GTI=1;LEN=1;MEANALT=1.05085;MQM=59.9339;MQMR=59.9207;NS=94;NUMALT=1;ODDS=1.91758;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76263;QR=219352;RO=6139;RPL=2149;RPP=4669.5;RPPR=13333.7;RPR=0;RUN=1;SAF=2149;SAP=4669.5;SAR=0;SRF=6139;SRP=13333.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.4	0/1:172:77,95:77:2755:95:3360:-250.832,0,-196.414	0/0:240:240,0:240:8581:0:0:0,-72.2472,-772.283	0/1:31:17,14:17:596:14:491:-35.1892,0,-44.6359	0/1:25:15,10:15:540:10:345:-23.8551,0,-41.4108	0/1:116:60,56:60:2156:56:1986:-144.094,0,-159.387	0/1:64:29,35:29:1021:35:1241:-92.7266,0,-72.9343	0/1:67:29,38:29:1029:38:1342:-100.819,0,-72.7521	0/1:95:39,56:39:1400:56:1996:-151.316,0,-97.7013	0/1:39:18,21:18:648:21:739:-55.0922,0,-46.9117	0/0:79:79,0:79:2803:0:0:0,-23.7814,-252.511	0/1:110:54,56:54:1910:56:2004:-147.52,0,-139.063	0/1:66:29,37:29:1035:37:1283:-95.8991,0,-73.5951	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:51:22,29:22:788:29:1016:-76.3964,0,-55.8923	0/0:34:33,1:33:1180:1:36:0,-6.63674,-102.91	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.7422	0/0:158:158,0:158:5659:0:0:0,-47.5627,-509.424	0/0:144:144,0:144:5172:0:0:0,-43.3483,-465.61	0/0:74:74,0:74:2638:0:0:0,-22.2762,-237.658	0/1:92:49,43:49:1751:43:1539:-111.107,0,-130.179	0/1:62:34,28:34:1224:28:980:-69.8463,0,-91.8032	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.772	0/1:192:78,114:78:2762:114:4030:-305.092,0,-191.023	0/1:134:79,55:79:2823:55:1967:-136.966,0,-213.97	0/0:63:62,1:62:2224:1:36:0,-15.3666,-196.825	0/1:288:157,131:157:5602:131:4665:-333.31,0,-417.555	0/0:87:80,7:80:2864:7:252:0,-3.16065,-234.964	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.675	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:196:99,97:99:3526:97:3442:-250.99,0,-258.548	0/1:101:41,60:41:1472:60:2111:-159.848,0,-102.372	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:109:108,1:108:3864:1:36:0,-29.214,-344.352	0/1:27:14,13:14:500:13:464:-33.9697,0,-37.2084	0/1:96:43,53:43:1544:53:1878:-140.399,0,-110.354	0/1:42:21,21:21:756:21:748:-55.002,0,-55.724	0/1:92:51,41:51:1828:41:1472:-105.081,0,-137.069	0/1:66:32,34:32:1144:34:1224:-90.5991,0,-83.4015	0/0:109:109,0:109:3884:0:0:0,-32.8123,-349.329	0/0:212:212,0:212:7586:0:0:0,-63.8184,-682.778	0/0:139:136,1:136:4880:1:36:0,-37.996,-435.708	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.315	0/1:137:62,75:62:2194:75:2682:-200.382,0,-156.484	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.394	0/1:69:31,38:31:1112:38:1351:-101.119,0,-79.6203	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:238:118,120:118:4228:120:4277:-313.463,0,-309.037	0/0:25:23,2:23:807:2:72:0,-0.689027,-66.1124	0/1:7:4,3:4:144:3:100:-7.22323,0,-11.2064	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/0:51:50,1:50:1788:1:36:0,-11.7543,-157.604	0/1:76:31,44:31:1116:44:1544:-116.312,0,-77.8146	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:463:463,0:463:16486:0:0:0,-139.377,-1483.38	0/0:151:148,3:148:5290:3:108:0,-35.3804,-466.149	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.139	0/0:93:93,0:93:3303:0:0:0,-27.9958,-297.462	0/1:151:60,91:60:2156:91:3242:-246.539,0,-148.795	0/0:110:110,0:110:3931:0:0:0,-33.1133,-353.938	0/1:29:16,13:16:568:13:464:-33.3676,0,-42.722	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.82	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:33:11,22:11:396:22:784:-60.949,0,-26.0488	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.561	0/1:137:72,65:72:2588:65:2315:-167.369,0,-191.821	0/1:134:72,62:72:2575:62:2190:-157.018,0,-191.661	0/1:228:117,111:117:4195:111:3936:-285.789,0,-309.091	0/0:51:51,0:51:1827:0:0:0,-15.3525,-164.71	0/0:79:79,0:79:2813:0:0:0,-23.7814,-253.408	0/1:18:10,8:10:347:8:284:-20.4848,0,-26.1451	0/0:157:156,1:156:5552:1:36:0,-43.6634,-496.177	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.623	0/1:348:177,170:177:6344:170:6027:-437.632,0,-466.208	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.229	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.108	0/1:52:28,24:28:1008:24:848:-60.9861,0,-75.3828	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:14:9,5:9:316:5:180:-12.3376,0,-24.5644	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/1:41:17,24:17:612:24:830:-62.6701,0,-43.0712	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4328	0/1:63:31,32:31:1088:32:1144:-84.3046,0,-79.2616	0/1:63:18,45:18:636:45:1586:-124.064,0,-38.6031	0/0:201:201,0:201:7187:0:0:0,-60.507,-646.798	0/0:152:151,1:151:5374:1:36:0,-42.1583,-480.182
chr06	473325	.	G	A	67807.9	PASS	AB=0.502319;ABP=3.29235;AC=47;AF=0.25;AN=188;AO=3068;CIGAR=1X;DP=11885;DPB=11885;DPRA=1.29092;EPP=6665.09;EPPR=19138;GTI=0;LEN=1;MEANALT=1.06897;MQM=50.9566;MQMR=59.8549;NS=94;NUMALT=1;ODDS=2.84254;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109437;QR=313224;RO=8812;RPL=1533;RPP=3.01313;RPPR=41.6532;RPR=1535;RUN=1;SAF=1533;SAP=3.01313;SAR=1535;SRF=4604;SRP=41.6532;SRR=4208;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.029	0/0:93:93,0:93:3288:0:0:0,-27.9958,-296.132	0/1:104:57,47:57:2035:47:1688:-116.96,0,-152.114	0/0:197:197,0:197:6970:0:0:0,-59.3029,-626.632	0/1:78:44,34:44:1567:34:1224:-85.288,0,-117.836	0/1:66:31,35:31:1112:35:1241:-89.7589,0,-80.5234	0/1:150:54,96:54:1908:96:3410:-259.111,0,-126.839	0/1:202:109,93:109:3849:93:3316:-233.829,0,-285.64	0/1:153:70,83:70:2495:83:2935:-211.351,0,-178.737	0/1:92:42,50:42:1512:50:1787:-132.579,0,-108.662	0/1:224:119,105:119:4245:105:3756:-266.244,0,-314.589	0/0:192:192,0:192:6824:0:0:0,-57.7978,-613.849	0/1:145:69,76:69:2484:76:2719:-194.316,0,-180.069	0/1:314:156,158:156:5515:158:5627:-400.472,0,-401.924	0/0:176:176,0:176:6248:0:0:0,-52.9813,-562.411	0/1:155:75,80:75:2624:80:2846:-204.915,0,-189.734	0/0:207:206,1:206:7298:1:36:0,-58.7149,-653.204	0/1:127:54,73:54:1935:73:2603:-193.225,0,-135.877	0/0:104:104,0:104:3709:0:0:0,-31.3071,-333.992	0/0:177:175,2:175:6237:2:72:0,-46.4456,-554.582	0/0:248:248,0:248:8816:0:0:0,-74.6554,-793.392	0/0:68:68,0:68:2406:0:0:0,-20.47,-216.793	0/1:81:46,35:46:1648:35:1252:-86.0236,0,-124.167	0/1:110:52,58:52:1836:58:2080:-153.403,0,-132.405	0/0:87:87,0:87:3104:0:0:0,-26.1896,-279.581	0/1:194:96,98:96:3413:98:3463:-248.576,0,-248.984	0/1:226:126,100:126:4475:100:3579:-247.805,0,-334.877	0/0:68:68,0:68:2418:0:0:0,-20.47,-217.871	0/1:247:99,147:99:3527:147:5251:-391.611,0,-243.164	0/0:144:141,3:141:5025:3:104:0,-33.8559,-442.889	0/0:95:91,4:91:3240:4:144:0,-15.2842,-278.377	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5474	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3626	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:7:4,3:4:144:3:108:-7.47887,0,-11.2064	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3198	0/1:337:184,153:184:6547:153:5457:-387.269,0,-487.863	0/1:65:31,34:31:1097:34:1171:-84.5721,0,-79.4665	0/0:135:135,0:135:4798:0:0:0,-40.639,-431.946	0/1:5:3,2:3:108:2:72:-5.21987,0,-8.57002	0/0:129:123,6:123:4364:6:216:0,-19.2579,-373.35	0/1:142:65,77:65:2308:77:2760:-200.895,0,-165.223	0/1:127:61,66:61:2164:66:2355:-169.868,0,-156.794	0/1:159:62,96:62:2213:96:3440:-254.717,0,-151.509	0/1:90:43,47:43:1521:47:1660:-122.335,0,-110.08	0/1:68:30,38:30:1056:38:1360:-101.495,0,-74.8777	0/0:88:88,0:88:3129:0:0:0,-26.4906,-281.831	0/0:156:156,0:156:5536:0:0:0,-46.9607,-498.34	0/0:95:95,0:95:3382:0:0:0,-28.5978,-304.591	0/0:142:142,0:142:5066:0:0:0,-42.7463,-456.071	0/1:115:64,51:64:2273:51:1828:-129.421,0,-170.212	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:90:90,0:90:3180:0:0:0,-27.0927,-286.389	0/1:43:17,26:17:612:26:936:-70.0857,0,-42.4687	0/1:16:6,10:6:216:10:360:-27.7606,0,-14.974	0/1:111:45,66:45:1608:66:2342:-173.165,0,-111.591	0/0:46:45,0:45:1593:0:0:0,-13.5463,-143.323	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:17:14,3:14:495:3:108:-4.91122,0,-39.7295	0/0:120:120,0:120:4292:0:0:0,-36.1236,-386.453	0/1:274:131,143:131:4672:143:5080:-369.276,0,-338.155	0/1:7:6,1:6:216:1:36:-1.4138,0,-17.6833	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.057	0/0:172:169,2:169:5980:2:72:0,-44.9981,-531.551	0/0:99:99,0:99:3525:0:0:0,-29.802,-317.459	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.28	0/0:127:124,3:124:4400:3:108:0,-28.2278,-386.164	0/0:89:89,0:89:3187:0:0:0,-26.7917,-287.044	0/1:156:101,55:101:3583:55:1972:-127.076,0,-275.715	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.728	0/0:162:162,0:162:5746:0:0:0,-48.7669,-517.258	0/1:29:16,13:16:568:13:464:-32.8767,0,-42.7146	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.199	0/1:121:60,61:60:2141:61:2173:-155.466,0,-156.531	0/1:262:157,105:157:5557:105:3714:-250.266,0,-421.273	0/1:145:61,84:61:2179:84:3011:-223.66,0,-152.726	0/0:141:141,0:141:5024:0:0:0,-42.4452,-452.307	0/0:170:163,7:163:5816:7:252:0,-28.1461,-500.506	0/1:16:5,11:5:180:11:396:-30.8487,0,-11.7273	0/0:117:117,0:117:4169:0:0:0,-35.2205,-375.302	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.668	0/1:182:92,89:92:3256:89:3191:-228.914,0,-238.414	0/0:146:146,0:146:5186:0:0:0,-43.9504,-466.873	0/0:203:202,1:202:7172:1:36:0,-57.5125,-641.939	0/1:166:86,80:86:3035:80:2859:-204.556,0,-223.407	0/0:302:298,4:298:10523:4:144:0,-77.7404,-933.814	0/1:69:34,35:34:1212:35:1251:-90.3885,0,-88.6093	0/0:184:184,0:184:6583:0:0:0,-55.3895,-592.543	0/1:158:84,74:84:2974:74:2660:-185.559,0,-220.323	0/0:190:190,0:190:6739:0:0:0,-57.1957,-606.571	0/1:253:140,113:140:4938:113:4021:-276.326,0,-368.41	0/1:216:91,125:91:3250:125:4475:-330.544,0,-227.694	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:264:261,3:261:9238:3:108:0,-69.4689,-821.382
chr06	501700	.	TATAG	TATAA,CATAA	175836	PASS	AB=0.4654,0.527094;ABP=47.3388,30.1911;AC=140,48;AF=0.744681,0.255319;AN=188;AO=5927,2265;CIGAR=4M1X,1X3M1X;DP=8246;DPB=8246;DPRA=0,1.19557;EPP=12734.7,4878.06;EPPR=26.8965;GTI=0;LEN=1,5;MEANALT=2.03191,2.5;MQM=59.9867,59.9815;MQMR=60;NS=94;NUMALT=2;ODDS=6.59757;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=211986,79921;QR=392;RO=11;RPL=5911,2260;RPP=12734.7,4878.06;RPPR=26.8965;RPR=16,5;RUN=1,1;SAF=0,0;SAP=12873.3,4921.4;SAR=5927,2265;SRF=0;SRP=26.8965;SRR=11;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:73:0,73,0:0:0:73,0:2601,0:-234.338,-21.9752,0,-234.338,-21.9752,-234.338	1/1:62:0,62,0:0:0:62,0:2210,0:-199.164,-18.6639,0,-199.164,-18.6639,-199.164	1/2:116:0,61,55:0:0:61,55:2180,1943:-336.336,-158.588,-140.225,-178.103,0,-161.547	1/1:167:0,166,0:0:0:166,0:5949,0:-535.116,-49.971,0,-535.116,-49.971,-535.116	1/2:56:0,29,27:0:0:29,27:1023,959:-161.796,-78.4982,-69.7683,-83.6516,0,-75.5238	1/2:45:0,29,16:0:0:29,16:1032,563:-130.294,-46.1833,-37.4534,-84.4636,0,-79.6471	1/2:81:0,34,47:0:0:34,47:1212,1643:-232.806,-134.009,-123.774,-99.1507,0,-85.0023	1/2:111:1,60,48:1:35:60,48:2143,1673:-307.683,-133.259,-118.045,-171.931,0,-160.33	1/2:140:0,54,85:0:0:54,85:1936,3005:-402.749,-244.844,-228.589,-158.009,0,-132.421	1/2:59:0,26,33:0:0:26,33:927,1157:-170.067,-94.5006,-86.6738,-75.9206,0,-65.9866	1/2:89:0,44,45:0:0:44,45:1569,1605:-259.092,-131.194,-117.948,-128.254,0,-114.708	1/1:151:1,149,1:1:35:149,1:5336,36:-476.869,-42.0107,0,-474.232,-41.9111,-476.779	1/2:100:0,48,51:0:0:48,51:1724,1796:-286.849,-146.209,-131.76,-140.636,0,-125.284	1/2:64:0,37,27:0:0:37,27:1332,957:-187.006,-78.3182,-67.1801,-109.044,0,-100.916	1/1:73:0,73,0:0:0:73,0:2597,0:-233.976,-21.9752,0,-233.976,-21.9752,-233.976	1/2:76:0,31,45:0:0:31,45:1104,1590:-219.828,-129.844,-120.512,-90.3387,0,-76.7924	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/2:34:0,18,15:0:0:18,15:644,521:-94.9102,-42.389,-36.9705,-52.5596,0,-48.0442	1/1:45:0,45,0:0:0:45,0:1612,0:-145.37,-13.5464,0,-145.37,-13.5464,-145.37	1/1:115:0,114,0:0:0:114,0:4096,0:-368.524,-34.3174,0,-368.524,-34.3174,-368.524	1/1:99:0,99,0:0:0:99,0:3535,0:-318.29,-29.802,0,-318.29,-29.802,-318.29	1/1:83:2,81,0:2:72:81,0:2885,0:-253.048,-18.1488,0,-253.65,-24.3834,-259.525	1/2:118:0,50,65:0:0:50,65:1792,2273:-331.077,-184.921,-169.869,-146.167,0,-126.6	1/2:74:3,43,28:3:107:43,28:1548,999:-198.125,-72.7174,-68.4956,-117.59,0,-117.883	1/1:126:0,126,0:0:0:126,0:4524,0:-407.326,-37.9298,0,-407.326,-37.9298,-407.326	1/2:234:0,94,140:0:0:94,140:3368,4982:-681.068,-406.386,-378.089,-275.039,0,-232.895	1/2:280:0,112,168:0:0:112,168:4015,5922:-809.989,-482.523,-448.807,-327.822,0,-277.249	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/2:178:0,85,91:0:0:85,91:3023,3209:-507.71,-261.351,-235.763,-246.422,0,-219.028	1/1:164:0,159,4:0:0:159,4:5661,142:-509.253,-47.8638,0,-497.683,-36.2975,-496.479	1/1:123:0,122,1:0:0:122,1:4362,36:-392.394,-36.7257,0,-389.457,-33.4284,-389.156	1/2:10:0,6,4:0:0:6,4:216,144:-29.734,-12.1095,-10.3033,-17.9843,0,-16.7802	1/1:20:0,20,0:0:0:20,0:703,0:-63.5935,-6.0206,0,-63.5935,-6.0206,-63.5935	1/2:9:0,7,2:0:0:7,2:252,67:-26.3421,-5.76078,-3.65357,-20.9217,0,-20.3197	1/2:14:0,6,8:0:0:6,8:208,284:-40.3979,-23.4951,-21.6889,-17.2529,0,-14.8447	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/2:201:0,99,101:0:0:99,101:3537,3550:-577.38,-288.997,-259.195,-288.426,0,-258.022	1/2:103:0,66,36:0:0:66,36:2349,1278:-295.571,-104.126,-84.2581,-191.44,0,-180.603	1/1:66:0,64,0:0:0:64,0:2300,0:-207.017,-19.2659,0,-207.017,-19.2659,-207.017	1/2:13:0,6,7:0:0:6,7:212,250:-38.0032,-20.7395,-18.9333,-17.6186,0,-15.5114	1/1:104:0,103,1:0:0:103,1:3683,36:-331.313,-31.0061,0,-328.375,-27.7088,-328.074	1/2:55:0,31,24:0:0:31,24:1116,853:-160.928,-69.8657,-60.5338,-91.4198,0,-84.195	1/2:161:0,73,87:0:0:73,87:2597,3077:-462.336,-250.687,-228.712,-211.722,0,-185.533	1/2:67:0,33,34:0:0:33,34:1180,1206:-194.829,-98.6112,-88.6772,-96.5741,0,-86.339	1/2:62:0,33,29:0:0:33,29:1184,1017:-179.69,-83.1102,-73.1762,-96.9343,0,-88.2045	1/2:142:0,45,96:0:0:45,96:1612,3380:-406.626,-275.159,-261.613,-131.464,0,-102.565	1/1:125:0,125,0:0:0:125,0:4471,0:-402.555,-37.6288,0,-402.555,-37.6288,-402.555	1/1:131:0,131,0:0:0:131,0:4675,0:-420.91,-39.4349,0,-420.91,-39.4349,-420.91	1/1:84:0,83,0:0:0:83,0:2960,0:-266.274,-24.9855,0,-266.274,-24.9855,-266.274	1/1:43:0,43,0:0:0:43,0:1527,0:-137.722,-12.9443,0,-137.722,-12.9443,-137.722	1/2:82:0,44,38:0:0:44,38:1564,1358:-238.53,-111.082,-97.8363,-127.805,0,-116.366	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:130:2,127,0:2:71:127,0:4548,0:-402.741,-32.449,0,-403.343,-38.2308,-409.128	1/2:64:0,25,39:0:0:25,39:896,1382:-186.016,-112.938,-105.413,-73.4346,0,-61.6944	1/2:24:0,12,12:0:0:12,12:432,416:-69.4142,-34.1586,-30.5462,-35.6088,0,-31.9965	1/2:120:0,48,69:0:0:48,69:1724,2399:-335.697,-195.056,-180.606,-140.655,0,-119.8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chr06	504839	.	A	G	22880.6	PASS	AB=0.511479;ABP=6.05134;AC=51;AF=0.271277;AN=188;AO=1381;CIGAR=1X;DP=5149;DPB=5149;DPRA=1.08365;EPP=3001.81;EPPR=8182.95;GTI=1;LEN=1;MEANALT=1.01667;MQM=59.9949;MQMR=60;NS=94;NUMALT=1;ODDS=0.084662;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49308;QR=134914;RO=3767;RPL=1381;RPP=3001.81;RPPR=8182.95;RPR=0;RUN=1;SAF=0;SAP=3001.81;SAR=1381;SRF=0;SRP=8182.95;SRR=3767;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:133:50,83:50:1784:83:2972:-227.676,0,-120.806	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/1:40:24,16:24:860:16:572:-39.7722,0,-65.6806	0/1:42:25,17:25:900:17:608:-42.4088,0,-68.6778	0/1:71:39,32:39:1400:32:1139:-81.4453,0,-104.926	0/1:89:52,37:52:1848:37:1320:-92.3103,0,-139.808	0/1:78:35,43:35:1252:43:1544:-115.773,0,-89.5047	0/1:78:42,36:42:1512:36:1284:-92.3831,0,-112.894	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/1:50:24,26:24:860:26:923:-68.3344,0,-62.6703	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:32:10,22:10:360:22:792:-61.9727,0,-23.1113	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.941	0/0:23:22,1:22:792:1:36:0,-3.32541,-68.0074	0/1:51:20,31:20:716:31:1108:-84.6785,0,-49.4152	0/1:55:34,21:34:1216:21:748:-51.0886,0,-93.1899	0/0:32:31,1:31:1108:1:36:0,-6.03468,-96.4327	0/1:205:116,89:116:4164:89:3192:-225.792,0,-313.23	0/1:138:71,67:71:2510:67:2396:-174.355,0,-184.608	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:89:39,50:39:1404:50:1784:-134.051,0,-99.8676	0/0:78:75,3:75:2672:3:108:0,-13.4052,-230.651	0/0:67:66,1:66:2360:1:36:0,-16.5707,-209.06	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:148:85,63:85:3052:63:2240:-157.311,0,-230.356	0/1:78:30,48:30:1080:48:1720:-131.605,0,-74.0329	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:63:62,1:62:2209:1:36:0,-15.3666,-195.475	0/1:32:8,24:8:288:24:856:-67.7281,0,-16.6344	0/1:57:28,29:28:1000:29:1035:-76.3052,0,-73.1567	0/1:32:18,14:18:644:14:504:-36.0651,0,-48.6576	0/1:34:14,20:14:504:20:720:-54.8938,0,-35.4631	0/1:61:31,30:31:1104:30:1063:-77.6172,0,-81.3078	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/1:95:52,43:52:1872:43:1524:-108.855,0,-140.161	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:110:109,1:109:3912:1:36:0,-29.515,-348.674	0/1:30:13,17:13:464:17:612:-46.3825,0,-33.0666	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/1:60:38,22:38:1360:22:780:-52.4612,0,-104.639	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:20:9,11:9:324:11:392:-29.5995,0,-23.4853	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.145	0/1:89:35,54:35:1256:54:1922:-146.464,0,-86.5536	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:104:104,0:104:3717:0:0:0,-31.3071,-334.73	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:76:75,1:75:2674:1:36:0,-19.28,-237.306	0/1:9:5,4:5:161:4:144:-10.6043,0,-12.0973	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:55:29,26:29:1036:26:922:-66.7408,0,-76.9973	0/1:120:60,60:60:2148:60:2130:-155.843,0,-157.464	0/1:66:30,36:30:1072:36:1276:-95.2751,0,-76.9245	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.6223	0/0:51:49,2:49:1760:2:68:0,-8.89482,-152.226	0/0:40:39,1:39:1400:1:36:0,-8.44292,-122.701	0/1:124:64,59:64:2292:59:2108:-152.603,0,-169.155	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:45:20,25:20:720:25:891:-66.9624,0,-51.5824	0/0:96:95,1:95:3408:1:36:0,-25.3006,-303.336	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/0:53:52,1:52:1860:1:36:0,-12.3563,-164.081	0/1:40:16,24:16:576:24:860:-65.6806,0,-40.1338	0/0:28:27,1:27:972:1:36:0,-4.83056,-84.1996	0/1:77:41,36:41:1467:36:1281:-92.4128,0,-109.146	0/1:45:10,35:10:360:35:1242:-98.5367,0,-19.198	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876
chr06	513157	.	A	T	159046	PASS	AB=0.449342;ABP=138.533;AC=139;AF=0.739362;AN=188;AO=7761;CIGAR=1X;DP=11174;DPB=11174;DPRA=0;EPP=16838.4;EPPR=7414.25;GTI=1;LEN=1;MEANALT=1;MQM=59.4306;MQMR=59.92;NS=94;NUMALT=1;ODDS=0.0884237;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277428;QR=121730;RO=3413;RPL=3;RPP=16829.8;RPPR=7414.25;RPR=7758;RUN=1;SAF=1;SAP=16847.1;SAR=7760;SRF=0;SRP=7414.25;SRR=3413;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1544:-139.063,-12.9443,0	1/1:96:4,92:4:144:92:3266:-280.791,-15.6117,0	0/1:127:89,38:89:3185:38:1346:-83.198,0,-248.636	1/1:359:2,357:2:72:357:12765:-1141.77,-101.233,0	0/1:132:61,71:61:2187:71:2552:-190.178,0,-157.359	0/1:121:65,56:65:2318:56:2000:-143.78,0,-172.437	0/1:185:80,105:80:2833:105:3756:-282.529,0,-199.518	0/1:181:107,74:107:3823:74:2656:-184.527,0,-289.777	0/1:106:44,62:44:1576:62:2228:-168.854,0,-110.222	0/1:149:78,71:78:2800:71:2537:-183.508,0,-207.386	0/1:50:21,29:21:756:29:1024:-77.4104,0,-53.3157	1/1:71:0,71:0:0:71:2533:-228.195,-21.3731,0	0/1:66:35,31:35:1256:31:1112:-80.5152,0,-93.4773	0/1:53:30,23:30:1064:23:824:-58.515,0,-80.1171	1/1:61:2,59:2:72:59:2108:-182.901,-11.5261,0	0/1:44:30,14:30:1061:14:485:-30.7319,0,-82.5519	1/1:48:1,47:1:36:47:1688:-148.597,-10.8512,0	0/1:53:34,19:34:1193:19:684:-45.7368,0,-91.7186	1/1:23:0,23:0:0:23:820:-74.1143,-6.92369,0	1/1:232:1,231:1:36:231:8279:-741.239,-66.2407,0	1/1:106:0,106:0:0:106:3780:-339.747,-31.9092,0	1/1:110:0,110:0:0:110:3940:-354.771,-33.1133,0	0/1:110:76,34:76:2681:34:1207:-75.822,0,-208.418	0/1:150:88,62:88:3160:62:2220:-154.793,0,-239.465	1/1:91:0,91:0:0:91:3246:-291.641,-27.3937,0	0/1:425:229,196:229:8175:196:6998:-501.408,0,-607.817	0/1:285:142,143:142:5087:143:5136:-376.463,0,-372.151	1/1:30:1,29:1:32:29:1027:-89.5396,-5.83159,0	0/1:636:334,302:334:11927:302:10755:-776.309,0,-881.832	1/1:129:9,120:9:324:120:4304:-357.529,-9.32702,0	1/1:116:2,114:2:72:114:4069:-359.504,-28.0828,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:27:2,25:2:72:25:900:-74.4788,-1.29109,0	0/1:11:7,4:7:252:4:144:-9.9448,0,-19.7176	0/1:11:7,4:7:243:4:144:-10.0023,0,-18.8962	0/1:23:6,17:6:216:17:604:-47.7302,0,-12.8668	0/1:187:106,81:106:3744:81:2904:-205.294,0,-280.87	0/1:295:168,127:168:6000:127:4534:-319.274,0,-451.132	1/1:62:1,61:1:36:61:2187:-193.092,-15.0656,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:279:4,275:4:144:275:9846:-872.494,-70.6738,0	0/1:50:29,21:29:1032:21:744:-52.2246,0,-78.142	0/1:244:155,89:155:5515:89:3186:-211.889,0,-422.938	0/1:61:33,28:33:1171:28:1000:-71.9525,0,-87.3338	0/1:60:25,35:25:875:35:1241:-93.8993,0,-61.0039	0/1:178:83,95:83:2963:95:3398:-252.432,0,-213.32	1/1:105:2,103:2:68:103:3684:-325.185,-25.1504,0	1/1:240:1,239:1:36:239:8572:-767.457,-68.6489,0	1/1:162:1,161:1:36:161:5731:-512.157,-45.1686,0	1/1:177:1,176:1:36:176:6308:-563.835,-49.684,0	0/1:311:151,160:151:5387:160:5733:-422.164,0,-391.343	1/1:12:0,12:0:0:12:432:-39.2203,-3.61236,0	1/1:190:2,188:2:72:188:6718:-597.78,-50.359,0	0/1:111:69,42:69:2472:42:1500:-101.87,0,-189.306	0/1:31:20,11:20:716:11:396:-26.6508,0,-55.4358	0/1:210:120,90:120:4292:90:3215:-225.362,0,-323.241	1/1:92:2,90:2:72:90:3207:-281.844,-20.858,0	0/1:18:2,16:2:63:16:576:-46.7456,0,-0.564615	0/1:32:16,16:16:572:16:558:-40.6836,0,-42.1805	1/1:104:0,104:0:0:104:3711:-333.591,-31.3071,0	0/1:108:51,57:51:1815:57:2040:-151.149,0,-131.119	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	1/1:136:2,134:2:72:134:4800:-424.983,-34.1034,0	1/1:216:1,215:1:36:215:7687:-687.558,-61.4242,0	1/1:60:2,58:2:72:58:2080:-180.618,-11.2251,0	1/1:159:2,157:2:72:157:5605:-497.583,-41.027,0	1/1:168:6,162:6:212:162:5783:-500.742,-31.1482,0	1/1:56:0,56:0:0:56:1974:-177.696,-16.8577,0	0/1:33:21,12:21:756:12:432:-29.2872,0,-58.4332	1/1:98:0,98:0:0:98:3516:-316.56,-29.5009,0	1/1:62:0,62:0:0:62:2220:-200.04,-18.6639,0	0/1:16:8,8:8:288:8:273:-20.0835,0,-21.4486	1/1:171:1,170:1:36:170:6084:-543.921,-47.8779,0	0/1:61:38,23:38:1364:23:820:-55.7597,0,-104.698	0/1:154:89,65:89:3177:65:2336:-163.889,0,-239.496	0/1:271:198,73:198:7053:73:2612:-153.539,0,-553.244	1/1:142:1,141:1:36:141:5028:-448.88,-39.2253,0	1/1:119:3,116:3:108:116:4160:-364.257,-25.7474,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:172:3,169:3:108:169:6052:-534.459,-41.702,0	1/1:165:2,163:2:72:163:5794:-513.99,-42.8332,0	0/1:319:176,143:176:6300:143:5105:-363.403,0,-471.062	1/1:84:0,84:0:0:84:2983:-268.647,-25.2865,0	1/1:48:1,47:1:36:47:1680:-147.754,-10.8512,0	0/1:83:45,38:45:1593:38:1364:-98.0748,0,-118.673	1/1:108:1,107:1:32:107:3852:-343.656,-29.313,0	0/1:41:24,17:24:852:17:612:-43.0712,0,-64.6582	1/1:77:1,76:1:36:76:2714:-240.748,-19.581,0	0/1:83:42,41:42:1483:41:1464:-107.046,0,-108.778	0/1:28:3,25:3:108:25:896:-72.5315,0,-1.64633	0/1:80:46,34:46:1635:34:1220:-86.0198,0,-123.354	0/1:69:53,16:53:1883:16:567:-30.5842,0,-148.977	1/1:12:0,12:0:0:12:417:-37.848,-3.61236,0	1/1:66:1,65:1:36:65:2336:-206.826,-16.2697,0
chr06	513195	.	A	C,T	235978	PASS	AB=0.441403,0.558269;ABP=184.966,182.936;AC=139,49;AF=0.739362,0.260638;AN=188;AO=7663,3472;CIGAR=1X,1X;DP=11137;DPB=11137;DPRA=0,1.74079;EPP=16643,7542.36;EPPR=5.18177;GTI=2;LEN=1,1;MEANALT=1.84043,2.01282;MQM=59.4528,59.9113;MQMR=60;NS=94;NUMALT=2;ODDS=0.645344;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=273324,123925;QR=36;RO=1;RPL=7663,3472;RPP=16643,7542.36;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=16643,7542.36;SAR=7663,3472;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42,0:0:0:42,0:1480,0:-133.405,-12.6433,0,-133.405,-12.6433,-133.405	1/1:93:0,89,4:0:0:89,4:3168,144:-284.613,-26.7917,0,-272.889,-14.7086,-271.685	1/2:124:0,39,85:0:0:39,85:1384,3033:-360.353,-247.607,-235.867,-113.101,0,-87.5138	1/1:354:0,352,2:0:0:352,2:12519,72:-1125.88,-105.963,0,-1120,-99.7279,-1119.4	1/2:130:0,71,59:0:0:71,59:2533,2116:-379.425,-172.948,-151.575,-206.834,0,-189.074	1/2:122:0,55,67:0:0:55,67:1956,2400:-355.289,-196.07,-179.514,-159.576,0,-139.407	1/2:187:0,105,82:0:0:105,82:3748,2895:-541.641,-236.099,-204.491,-305.897,0,-281.212	1/2:177:0,72,105:0:0:72,105:2569,3733:-513.948,-304.56,-282.886,-209.744,0,-178.136	1/2:104:0,58,46:0:0:58,46:2083,1643:-304.233,-134.311,-116.852,-170.279,0,-156.432	1/2:151:0,71,80:0:0:71,80:2544,2876:-442.256,-234.994,-213.621,-207.621,0,-183.538	1/2:51:0,29,22:0:0:29,22:1024,788:-147.997,-64.6221,-55.8923,-83.7304,0,-77.1077	1/1:70:0,70,0:0:0:70,0:2504,0:-225.585,-21.0721,0,-225.585,-21.0721,-225.585	1/2:63:0,31,32:0:0:31,32:1104,1148:-183.97,-93.9969,-84.6649,-90.3305,0,-80.6976	1/2:55:0,22,33:0:0:22,33:783,1180:-160.387,-96.5727,-89.9501,-64.1703,0,-54.2363	1/1:60:0,58,2:0:0:58,2:2076,72:-186.497,-17.4597,0,-180.623,-11.2251,-180.02	1/2:44:0,14,30:0:0:14,30:500,1072:-128.499,-87.7424,-83.528,-41.1135,0,-32.0826	1/1:50:0,49,1:0:0:49,1:1733,36:-155.887,-14.7505,0,-152.95,-11.4532,-152.649	1/2:55:0,19,36:0:0:19,36:680,1273:-159.289,-104.034,-98.3143,-55.6107,0,-44.7736	1/1:23:0,23,0:0:0:23,0:824,0:-74.4751,-6.92369,0,-74.4751,-6.92369,-74.4751	1/1:231:0,230,1:0:0:230,1:8197,36:-737.079,-69.2369,0,-734.142,-65.9397,-733.841	1/1:106:0,106,0:0:0:106,0:3762,0:-338.763,-31.9092,0,-338.763,-31.9092,-338.763	1/1:113:0,113,0:0:0:113,0:4044,0:-364.128,-34.0164,0,-364.128,-34.0164,-364.128	1/2:116:0,36,80:0:0:36,80:1296,2857:-339.027,-233.279,-222.442,-106.107,0,-82.0245	1/2:149:0,59,90:0:0:59,90:2097,3228:-434.418,-263.647,-245.886,-171.128,0,-144.035	1/1:89:0,89,0:0:0:89,0:3184,0:-285.653,-26.7917,0,-285.653,-26.7917,-285.653	1/2:418:0,191,227:0:0:191,227:6829,8094:-1216.31,-660.127,-602.631,-556.542,0,-488.208	1/2:282:0,137,145:0:0:137,145:4895,5196:-823.087,-424.101,-382.86,-399.344,0,-355.694	1/1:31:0,30,1:0:0:30,1:1067,36:-95.9687,-9.0309,0,-93.0312,-5.73366,-92.7302	1/2:652:0,302,350:0:0:302,350:10773,12496:-1897.22,-1019.11,-928.197,-878.471,0,-773.111	1/1:129:0,120,9:0:0:120,9:4300,320:-386.32,-36.1236,0,-360.243,-9.69051,-357.534	1/1:108:0,106,2:0:0:106,2:3781,72:-340.103,-31.9092,0,-334.228,-25.6745,-333.626	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:28:0,26,2:0:0:26,2:932,72:-83.8336,-7.82678,0,-77.9587,-1.59212,-77.3566	1/2:12:0,4,8:0:0:4,8:144,288:-35.5524,-23.8592,-22.655,-12.052,0,-9.64377	1/2:11:0,4,7:0:0:4,7:144,248:-32.3087,-20.557,-19.3529,-12.1095,0,-10.0023	1/2:21:0,17,4:0:0:17,4:589,144:-59.9482,-12.1095,-6.99199,-48.196,0,-46.9919	1/2:189:0,80,109:0:0:80,109:2830,3924:-551.029,-320.538,-296.456,-230.847,0,-198.034	1/2:301:0,125,176:0:0:125,176:4461,6270:-874.703,-511.229,-473.601,-363.83,0,-310.849	1/1:62:0,60,2:0:0:60,2:2152,72:-193.189,-18.0618,0,-187.314,-11.8271,-186.712	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/1:278:0,274,4:0:0:274,4:9808,144:-882.035,-82.4822,0,-870.285,-70.3727,-869.081	1/2:49:0,21,28:0:0:21,28:752,981:-141.494,-80.1722,-73.8506,-61.6764,0,-53.2476	1/2:243:0,90,153:0:0:90,153:3187,5421:-700.48,-441.954,-414.861,-258.879,0,-212.822	1/2:60:0,27,33:0:0:27,33:972,1172:-175.166,-95.8535,-87.7257,-79.6701,0,-69.7361	1/2:61:0,34,27:0:0:34,27:1211,949:-176.27,-77.5946,-67.3595,-99.029,0,-90.9012	1/2:174:0,92,82:0:0:92,82:3250,2940:-504.799,-240.149,-212.455,-265.006,0,-240.322	1/1:99:0,97,2:0:0:97,2:3467,72:-311.847,-29.1999,0,-305.972,-22.9652,-305.37	1/1:239:0,237,2:0:0:237,2:8466,72:-761.099,-71.3441,0,-755.224,-65.1094,-754.622	1/1:165:0,164,1:0:0:164,1:5849,36:-526.01,-49.3689,0,-523.073,-46.0717,-522.772	1/1:175:0,174,1:0:0:174,1:6229,36:-560.142,-52.3792,0,-557.205,-49.082,-556.904	1/2:317:0,157,160:0:0:157,160:5591,5698:-920.308,-464.769,-417.508,-455.894,0,-407.729	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:188:0,186,2:0:0:186,2:6644,72:-597.623,-55.9916,0,-591.748,-49.7569,-591.146	1/2:111:0,41,70:0:0:41,70:1476,2508:-325.312,-204.886,-192.544,-120.785,0,-99.7125	1/2:31:0,10,21:0:0:10,21:356,747:-90.2439,-61.2287,-58.2184,-29.3709,0,-23.0493	1/2:214:0,88,126:0:0:88,126:3136,4493:-621.521,-366.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chr06	542619	.	A	T	269601	PASS	AB=0.549992;ABP=140.877;AC=140;AF=0.744681;AN=188;AO=10826;CIGAR=1X;DP=13717;DPB=13717;DPRA=0;EPP=11631.2;EPPR=1506.82;GTI=1;LEN=1;MEANALT=1.08511;MQM=59.9822;MQMR=59.9931;NS=94;NUMALT=1;ODDS=4.67747;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=387527;QR=102980;RO=2883;RPL=9220;RPP=11631.2;RPPR=1506.82;RPR=1606;RUN=1;SAF=10826;SAP=23511.4;SAR=0;SRF=2883;SRP=6263.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:283:0,283:0:0:283:10113:-910.093,-85.1915,0	0/1:204:85,119:85:3044:119:4261:-322.256,0,-212.78	1/1:379:0,379:0:0:379:13585:-1222.42,-114.09,0	0/1:84:36,48:36:1265:48:1719:-129.708,0,-88.8641	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/1:100:33,67:33:1157:67:2403:-186.423,0,-74.3315	0/1:270:128,142:128:4596:142:5089:-376.873,0,-332.525	0/1:180:66,114:66:2364:114:4089:-314.009,0,-158.833	0/1:186:82,104:82:2933:104:3695:-276.761,0,-208.211	0/1:104:57,47:57:2036:47:1679:-120.089,0,-152.075	1/1:100:0,100:0:0:100:3565:-321.057,-30.103,0	0/1:70:24,46:24:860:46:1648:-127.536,0,-56.6497	0/1:129:70,59:70:2512:59:2120:-152.236,0,-187.499	1/1:96:0,95:0:0:95:3420:-307.653,-28.5979,0	0/1:60:31,29:31:1108:29:1044:-76.213,0,-81.9692	1/1:129:0,129:0:0:129:4618:-415.736,-38.8329,0	0/1:71:21,49:21:756:49:1756:-136.892,0,-46.9353	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:316:0,316:0:0:316:11321:-1017.99,-95.1255,0	1/1:252:0,252:0:0:252:8969:-807.186,-75.8596,0	1/1:165:0,165:0:0:165:5907:-531.739,-49.67,0	0/1:124:59,65:59:2112:65:2313:-171.101,0,-153.021	0/1:183:41,142:41:1438:142:5091:-403.244,0,-74.6233	1/1:89:0,89:0:0:89:3167:-285.255,-26.7917,0	0/1:474:213,261:213:7628:261:9349:-698.684,0,-543.868	0/1:343:174,169:174:6210:169:6036:-440.09,0,-455.742	1/1:55:0,55:0:0:55:1967:-177.304,-16.5567,0	0/1:332:168,163:168:5991:163:5856:-427.148,0,-439.292	1/1:299:6,293:6:216:293:10441:-919.82,-70.2175,0	1/1:216:0,216:0:0:216:7735:-696.181,-65.0225,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:24:0,24:0:0:24:851:-76.9095,-7.22472,0	0/1:9:2,7:2:68:7:239:-19.1334,0,-3.74844	0/1:13:5,8:5:180:8:279:-21.5341,0,-12.6387	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:256:111,144:111:3980:144:5158:-387.237,0,-281.267	0/1:167:94,73:94:3357:73:2624:-186.135,0,-252.073	1/1:90:0,90:0:0:90:3184:-286.782,-27.0927,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:222:7,215:7:252:215:7684:-668.561,-43.7997,0	0/1:29:10,19:10:356:19:684:-53.1605,0,-23.6514	0/1:224:97,127:97:3452:127:4547:-341.965,0,-243.464	0/1:130:62,68:62:2223:68:2448:-180.813,0,-161.2	0/1:76:37,39:37:1324:39:1404:-103.781,0,-96.5838	0/1:204:62,142:62:2209:142:5092:-397.013,0,-137.663	1/1:166:0,166:0:0:166:5929:-533.717,-49.971,0	1/1:248:0,248:0:0:248:8899:-800.887,-74.6554,0	1/1:133:1,132:1:36:132:4728:-422.08,-36.4387,0	1/1:303:0,303:0:0:303:10862:-977.476,-91.2121,0	0/1:214:111,103:111:3969:103:3696:-268.421,0,-292.979	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:182:1,181:1:36:181:6466:-578.425,-51.1892,0	0/1:55:19,36:19:680:36:1288:-99.6669,0,-44.9725	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:186:94,92:94:3361:92:3304:-241.586,0,-246.713	1/1:128:0,128:0:0:128:4596:-413.803,-38.5318,0	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	0/1:48:19,29:19:680:29:1040:-79.4649,0,-47.0797	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	0/1:159:78,80:78:2783:80:2861:-209.803,0,-202.788	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:353:0,353:0:0:353:12663:-1139.43,-106.264,0	1/1:232:2,230:2:72:230:8251:-735.761,-63.0022,0	1/1:116:0,116:0:0:116:4153:-373.951,-34.9195,0	1/1:128:0,128:0:0:128:4591:-413.352,-38.5318,0	1/1:284:3,281:3:108:281:10022:-891.84,-75.4174,0	1/1:128:1,127:1:36:127:4547:-405.798,-34.9336,0	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	1/1:166:0,166:0:0:166:5918:-532.728,-49.971,0	1/1:93:0,93:0:0:93:3333:-300.185,-27.9958,0	0/1:40:19,21:19:669:21:756:-56.326,0,-48.4927	1/1:124:0,124:0:0:124:4452:-400.849,-37.3277,0	0/1:94:46,48:46:1614:48:1709:-125.798,0,-117.248	0/1:433:186,247:186:6644:247:8839:-665.148,0,-467.694	0/1:266:101,165:101:3597:165:5932:-453.911,0,-243.862	1/1:177:0,177:0:0:177:6305:-567.54,-53.2823,0	1/1:222:4,218:4:140:218:7819:-690.79,-53.8841,0	0/1:22:8,14:8:288:14:496:-38.3516,0,-19.6447	1/1:223:1,222:1:36:222:7971:-713.81,-63.5314,0	1/1:161:0,161:0:0:161:5784:-520.672,-48.4658,0	0/1:248:119,128:119:4240:128:4592:-338.729,0,-307.067	1/1:121:1,120:1:36:120:4292:-382.857,-32.8264,0	1/1:83:0,82:0:0:82:2952:-265.553,-24.6845,0	0/1:117:57,59:57:2048:59:2120:-155.878,0,-149.401	1/1:190:1,189:1:36:189:6747:-603.705,-53.5974,0	0/1:54:28,26:28:1008:26:936:-68.3038,0,-74.7807	1/1:70:0,70:0:0:70:2478:-223.271,-21.0721,0	0/1:103:41,62:41:1452:62:2232:-170.137,0,-99.9698	1/1:59:0,59:0:0:59:2101:-189.358,-17.7608,0	0/1:119:48,71:48:1724:71:2541:-193.116,0,-119.623	0/1:70:49,21:49:1760:21:752:-46.9342,0,-137.612	1/1:204:0,204:0:0:204:7291:-656.239,-61.4101,0	1/1:141:3,138:3:108:138:4949:-435.483,-32.3701,0
chr06	542648	.	T	C	343202	PASS	AB=0.483991;ABP=22.6857;AC=140;AF=0.744681;AN=188;AO=13723;CIGAR=1X;DP=18342;DPB=18342;DPRA=0;EPP=29802.1;EPPR=10000.5;GTI=0;LEN=1;MEANALT=1.1383;MQM=59.9319;MQMR=59.9088;NS=94;NUMALT=1;ODDS=4.57746;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=480566;QR=163351;RO=4604;RPL=10654;RPP=9106.68;RPPR=637.661;RPR=3069;RUN=1;SAF=10654;SAP=9106.68;SAR=3069;SRF=2882;SRP=637.661;SRR=1722;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:61:0,61:0:0:61:2089:-188.275,-18.3628,0	1/1:279:0,278:0:0:278:9730:-875.302,-83.6863,0	0/1:267:149,118:149:5276:118:4138:-292.234,0,-394.603	1/1:593:1,591:1:36:591:20678:-1856.4,-174.891,0	0/1:112:60,52:60:2143:52:1829:-131.175,0,-159.422	0/1:48:34,14:34:1220:14:496:-30.5248,0,-95.6574	0/1:177:65,112:65:2297:112:3926:-300.246,0,-153.708	0/1:328:194,134:194:6882:134:4688:-323.35,0,-519.898	0/1:211:98,112:98:3469:112:3941:-291.31,0,-248.819	0/1:231:111,119:111:3956:119:4172:-306.063,0,-286.637	0/1:142:81,61:81:2860:61:2111:-147.511,0,-214.762	1/1:97:1,96:1:36:96:3348:-297.942,-25.6016,0	0/1:101:56,45:56:1978:45:1578:-111.905,0,-147.887	0/1:161:99,62:99:3499:62:2152:-145.482,0,-265.878	1/1:144:1,143:1:36:143:5009:-447.362,-39.75,0	0/1:93:65,28:65:2310:28:995:-61.8682,0,-180.164	1/1:125:0,125:0:0:125:4403:-396.177,-37.6288,0	0/1:85:37,48:37:1324:48:1707:-128.328,0,-93.8745	1/1:46:0,46:0:0:46:1624:-146.449,-13.8474,0	1/1:699:3,695:3:89:695:24453:-2190.99,-202.159,0	1/1:246:0,246:0:0:246:8546:-769.16,-74.0534,0	1/1:257:0,257:0:0:257:9030:-812.682,-77.3647,0	0/1:209:101,108:101:3586:108:3803:-279.539,0,-260.033	0/1:194:55,139:55:1964:139:4846:-377.906,0,-118.633	1/1:90:0,90:0:0:90:3096:-278.869,-27.0927,0	0/1:679:308,371:308:10949:371:13013:-966.491,0,-780.915	0/1:442:273,169:273:9701:169:5956:-403.102,0,-739.499	1/1:53:0,53:0:0:53:1844:-166.239,-15.9546,0	0/1:570:283,285:283:10017:285:9971:-726.026,0,-730.214	1/1:293:8,285:8:288:285:9982:-872.067,-61.9344,0	1/1:283:0,283:0:0:283:9905:-891.417,-85.1915,0	0/1:8:6,2:6:216:2:63:-3.57491,0,-17.3823	1/1:23:0,23:0:0:23:778:-70.3299,-6.92369,0	0/1:8:2,6:2:72:6:208:-16.6508,0,-4.42848	0/1:21:13,8:13:464:8:269:-18.2145,0,-35.7677	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	0/1:469:215,254:215:7611:254:8860:-656.214,0,-542.835	0/1:221:150,71:150:5297:71:2454:-154.584,0,-409.393	1/1:86:0,86:0:0:86:2953:-266.005,-25.8886,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:213:7,206:7:248:206:7229:-628.01,-41.4552,0	0/1:49:30,19:30:1071:19:645:-43.6165,0,-81.9511	0/1:274:147,127:147:5218:127:4451:-318.285,0,-387.174	0/1:185:91,94:91:3226:94:3330:-243.798,0,-234.873	0/1:117:62,55:62:2161:55:1888:-134.973,0,-159.533	0/1:308:110,197:110:3904:197:6924:-530.617,0,-258.913	1/1:160:0,160:0:0:160:5625:-506.379,-48.1648,0	1/1:367:0,366:0:0:366:12931:-1163.25,-110.177,0	1/1:204:2,202:2:72:202:7052:-627.906,-54.5734,0	1/1:372:0,372:0:0:372:12949:-1165.26,-111.983,0	0/1:281:134,146:134:4765:146:5091:-373.692,0,-344.361	1/1:20:0,20:0:0:20:700:-63.3235,-6.0206,0	1/1:179:1,178:1:32:178:6248:-559.227,-50.6851,0	0/1:109:52,57:52:1845:57:1975:-145.209,0,-133.516	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:257:166,91:166:5901:91:3218:-212.48,0,-453.769	1/1:159:0,159:0:0:159:5561:-500.616,-47.8638,0	0/1:16:9,7:9:316:7:248:-17.8477,0,-23.9624	0/1:48:17,31:17:590:31:1070:-82.1516,0,-38.9747	1/1:84:0,84:0:0:84:2949:-265.646,-25.2865,0	0/1:227:111,116:111:3951:116:4051:-296.45,0,-287.449	0/1:15:7,8:7:244:8:288:-21.7425,0,-17.784	1/1:543:1,541:1:36:541:19028:-1708.54,-159.89,0	1/1:371:4,365:4:144:365:12849:-1142.95,-98.0963,0	1/1:118:0,118:0:0:118:4133:-372.159,-35.5215,0	1/1:231:0,231:0:0:231:8146:-733.162,-69.5379,0	1/1:378:3,374:3:108:374:13085:-1167.43,-103.661,0	1/1:232:4,228:4:140:228:8035:-710.084,-56.8944,0	0/1:46:37,9:37:1316:9:320:-15.295,0,-104.89	1/1:161:0,161:0:0:161:5610:-505.033,-48.4658,0	1/1:137:0,137:0:0:137:4793:-431.532,-41.2411,0	0/1:50:24,26:24:864:26:911:-67.2511,0,-63.0311	1/1:125:0,125:0:0:125:4361:-392.672,-37.6288,0	0/1:132:84,48:84:2953:48:1666:-110.488,0,-226.27	0/1:460:221,239:221:7849:239:8406:-618.084,0,-567.968	0/1:465:247,218:247:8813:218:7658:-549.28,0,-652.243	1/1:173:0,173:0:0:173:6075:-546.862,-52.0782,0	1/1:222:4,218:4:144:218:7613:-671.911,-53.515,0	0/1:23:9,14:9:320:14:496:-38.0506,0,-22.2187	1/1:218:3,215:3:108:215:7555:-669.928,-55.5494,0	1/1:160:0,160:0:0:160:5564:-500.899,-48.1648,0	0/1:356:171,185:171:6101:185:6373:-466.494,0,-442.025	1/1:165:1,164:1:32:164:5708:-510.648,-46.4706,0	1/1:145:1,144:1:36:144:5068:-452.641,-40.0511,0	0/1:140:71,69:71:2517:69:2442:-177.891,0,-184.637	1/1:309:2,306:2:72:306:10721:-958.027,-86.1471,0	0/1:61:34,27:34:1220:27:960:-68.3534,0,-91.744	1/1:65:0,65:0:0:65:2280:-205.461,-19.567,0	0/1:140:78,62:78:2771:62:2180:-154.323,0,-207.488	1/1:59:0,59:0:0:59:2045:-184.32,-17.7608,0	0/1:158:86,72:86:3028:72:2560:-183.087,0,-225.059	0/1:122:88,34:88:3083:34:1181:-69.8645,0,-240.702	1/1:340:0,340:0:0:340:11800:-1061.79,-102.35,0	1/1:214:2,212:2:72:212:7417:-660.742,-57.5837,0
chr06	547923	.	T	G	150314	PASS	AB=0.544125;ABP=68.9321;AC=142;AF=0.755319;AN=188;AO=7108;CIGAR=1X;DP=8912;DPB=8912;DPRA=0;EPP=15238.7;EPPR=3844.65;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.99;MQMR=60;NS=94;NUMALT=1;ODDS=0.348009;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251200;QR=64569;RO=1801;RPL=24;RPP=15230.1;RPPR=3844.65;RPR=7084;RUN=1;SAF=1;SAP=15429.2;SAR=7107;SRF=0;SRP=3913.83;SRR=1801;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1015:-91.6609,-8.72987,0	1/1:153:0,153:0:0:153:5439:-489.64,-46.0576,0	0/1:82:36,46:36:1288:46:1648:-123.924,0,-91.5391	1/1:134:0,134:0:0:134:4723:-425.232,-40.338,0	0/1:65:22,43:22:777:43:1520:-117.526,0,-50.6834	0/1:55:20,35:20:720:35:1252:-96.4284,0,-48.5721	0/1:106:44,62:44:1580:62:2202:-166.535,0,-110.582	0/1:147:77,70:77:2757:70:2439:-175.514,0,-204.118	0/1:88:48,40:48:1720:40:1410:-100.705,0,-128.595	0/1:113:50,63:50:1781:63:2247:-168.476,0,-126.554	0/1:82:44,38:44:1576:38:1343:-96.4834,0,-117.447	1/1:68:1,67:1:36:67:2309:-204.469,-16.8718,0	0/1:69:29,40:29:1044:40:1400:-105.523,0,-73.5037	0/1:59:20,39:20:720:39:1358:-104.753,0,-47.368	1/1:59:0,59:0:0:59:2073:-186.839,-17.7608,0	0/1:50:23,27:23:828:27:959:-71.5739,0,-59.7926	1/1:75:0,75:0:0:75:2641:-237.934,-22.5773,0	0/1:55:31,24:31:1112:24:856:-60.8045,0,-83.8347	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	1/1:151:1,150:1:36:150:5300:-473.544,-41.8573,0	1/1:163:0,163:0:0:163:5768:-519.235,-49.0679,0	1/1:106:0,106:0:0:106:3775:-339.95,-31.9092,0	0/1:72:33,39:33:1184:39:1354:-100.48,0,-85.1942	0/1:139:53,86:53:1904:86:3047:-232.618,0,-129.795	1/1:74:0,74:0:0:74:2615:-235.596,-22.2762,0	0/1:224:99,125:99:3540:125:4410:-329.646,0,-251.379	0/1:156:72,84:72:2588:84:2973:-220.843,0,-186.208	1/1:42:0,42:0:0:42:1491:-134.484,-12.6433,0	0/1:164:66,98:66:2368:98:3466:-262.783,0,-164.009	1/1:184:9,175:9:320:175:6182:-527.342,-26.2472,0	1/1:111:5,106:5:180:106:3766:-322.588,-16.8623,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:235:124,111:124:4436:111:3942:-284.232,0,-328.67	0/1:172:70,102:70:2520:102:3624:-274.588,0,-175.274	1/1:87:0,87:0:0:87:3068:-276.349,-26.1896,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:110:1,109:1:36:109:3854:-343.458,-29.515,0	0/1:31:12,19:12:432:19:667:-51.0227,0,-29.8893	0/1:109:47,62:47:1684:62:2179:-163.563,0,-119.035	0/1:88:43,45:43:1548:45:1570:-115.096,0,-113.122	0/1:60:29,31:29:1036:31:1095:-80.7967,0,-75.4921	0/1:99:49,50:49:1764:50:1780:-130.681,0,-129.242	1/1:160:0,160:0:0:160:5616:-505.569,-48.1648,0	1/1:153:0,153:0:0:153:5429:-488.741,-46.0576,0	1/1:210:0,210:0:0:210:7469:-672.258,-63.2163,0	1/1:179:0,179:0:0:179:6393:-575.457,-53.8844,0	0/1:133:78,55:78:2800:55:1968:-137.358,0,-212.203	1/1:10:0,10:0:0:10:358:-32.5629,-3.0103,0	1/1:148:0,147:0:0:147:5197:-467.513,-44.2514,0	0/1:38:22,16:22:780:16:563:-39.56,0,-59.0839	0/1:21:3,18:3:108:18:648:-52.3303,0,-3.75354	0/1:70:30,40:30:1076:40:1424:-107.385,0,-76.0808	1/1:29:0,29:0:0:29:1020:-92.1027,-8.72987,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:16:5,11:5:180:11:379:-29.6241,0,-11.7356	1/1:88:0,88:0:0:88:3095:-278.778,-26.4906,0	0/1:115:58,57:58:2071:57:2003:-145.922,0,-152.042	1/1:2:0,2:0:0:2:64:-6.07869,-0.60206,0	1/1:206:0,204:0:0:204:7252:-652.377,-61.4101,0	1/1:284:6,278:6:216:278:9870:-868.46,-65.702,0	1/1:136:0,136:0:0:136:4839:-435.667,-40.9401,0	1/1:103:0,103:0:0:103:3630:-326.906,-31.0061,0	1/1:191:0,191:0:0:191:6782:-610.458,-57.4967,0	1/1:102:0,102:0:0:102:3618:-325.826,-30.7051,0	0/1:33:16,17:16:572:17:587:-43.2193,0,-41.8794	1/1:103:0,103:0:0:103:3667:-330.232,-31.0061,0	1/1:89:0,89:0:0:89:3149:-283.635,-26.7917,0	0/1:29:13,16:13:468:16:564:-42.3604,0,-33.7298	1/1:105:0,105:0:0:105:3706:-333.744,-31.6082,0	0/1:96:58,38:58:2084:38:1331:-91.1879,0,-158.931	0/1:162:79,83:79:2828:83:2891:-211.656,0,-205.992	0/1:89:31,58:31:1116:58:2072:-159.959,0,-73.96	1/1:120:0,120:0:0:120:4274:-384.839,-36.1236,0	1/1:137:0,137:0:0:137:4813:-433.32,-41.2411,0	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	1/1:132:0,132:0:0:132:4683:-421.632,-39.736,0	1/1:58:0,58:0:0:58:2058:-185.49,-17.4597,0	0/1:175:45,130:45:1620:130:4639:-364.993,0,-93.4097	1/1:105:1,104:1:36:104:3618:-322.228,-28.0099,0	1/1:57:0,57:0:0:57:2031:-183.062,-17.1587,0	0/1:98:47,51:47:1688:51:1790:-131.877,0,-122.706	1/1:151:0,151:0:0:151:5243:-472.013,-45.4555,0	0/1:33:13,20:13:468:20:712:-54.4727,0,-32.5257	1/1:62:0,62:0:0:62:2176:-196.104,-18.6639,0	0/1:75:34,41:34:1215:41:1421:-105.604,0,-87.0785	1/1:47:0,47:0:0:47:1639:-147.793,-14.1484,0	0/1:85:39,46:39:1396:46:1601:-118.787,0,-100.352	0/1:74:48,26:48:1724:26:916:-60.4802,0,-133.169	1/1:96:0,96:0:0:96:3402:-306.394,-28.8989,0	1/1:134:0,134:0:0:134:4627:-416.596,-40.338,0
chr06	558939	.	A	G	111357	PASS	AB=0.494353;ABP=4.06495;AC=139;AF=0.747312;AN=186;AO=5427;CIGAR=1X;DP=7377;DPB=7377;DPRA=11.4441;EPP=11787.6;EPPR=4224.35;GTI=1;LEN=1;MEANALT=1.06522;MQM=51.5213;MQMR=59.6862;NS=93;NUMALT=1;ODDS=2.74317;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192684;QR=69433;RO=1944;RPL=5426;RPP=11778.9;RPPR=4224.35;RPR=1;RUN=1;SAF=5426;SAP=11778.9;SAR=1;SRF=1944;SRP=4224.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1644:-147.123,-13.8474,0	1/1:63:0,63:0:0:63:2251:-201.424,-18.9649,0	0/1:158:82,76:82:2944:76:2719:-194.853,0,-217.346	1/1:185:1,184:1:32:184:6495:-579.205,-52.4912,0	0/1:20:10,10:10:360:10:360:-26.6379,0,-26.7237	0/1:29:11,18:11:396:18:644:-49.2957,0,-27.2243	0/1:48:22,26:22:780:26:928:-68.493,0,-56.0736	0/1:144:70,74:70:2480:74:2647:-193.574,0,-179.986	0/1:103:53,50:53:1896:50:1761:-126.945,0,-139.807	0/1:127:54,73:54:1936:73:2601:-195.409,0,-136.26	0/1:35:15,20:15:531:20:708:-53.3984,0,-37.5835	1/1:83:0,83:0:0:83:2915:-260.707,-24.9855,0	0/1:65:29,36:29:1036:36:1271:-94.2834,0,-73.9745	0/1:50:23,27:23:828:27:949:-70.1551,0,-59.7926	1/1:83:0,83:0:0:83:2943:-264.328,-24.9855,0	0/1:44:35,9:35:1252:9:324:-16.1638,0,-99.7351	1/1:18:0,18:0:0:18:648:-58.3516,-5.41854,0	0/1:41:16,25:16:568:25:872:-66.0711,0,-39.1096	1/1:21:0,21:0:0:21:748:-67.0016,-6.32163,0	1/1:154:0,154:0:0:154:5489:-492.165,-46.3586,0	1/1:170:0,170:0:0:170:6015:-539.651,-51.1751,0	1/1:49:0,49:0:0:49:1730:-155.535,-14.7505,0	0/1:117:50,67:50:1788:67:2356:-176.654,0,-125.977	0/1:76:35,41:35:1244:41:1468:-108.644,0,-89.368	1/1:69:0,69:0:0:69:2461:-220.771,-20.7711,0	0/1:255:108,147:108:3884:147:5247:-394.239,0,-272.985	0/1:273:136,137:136:4872:137:4860:-352.346,0,-356.395	1/1:22:0,22:0:0:22:779:-70.2168,-6.62266,0	0/1:240:154,86:154:5496:86:3030:-199.843,0,-422.518	1/1:89:1,88:1:36:88:3130:-277.081,-23.1934,0	1/1:84:0,82:0:0:82:2914:-261.356,-24.6845,0	0/1:8:2,6:2:72:6:216:-17.3174,0,-4.42848	1/1:5:0,5:0:0:5:180:-16.4858,-1.50515,0	.:.:.:.:.:.:.:.	0/1:9:8,1:8:288:1:36:-0.869497,0,-23.5581	1/1:18:0,18:0:0:18:648:-58.3339,-5.41854,0	0/1:197:97,100:97:3445:100:3523:-257.057,0,-250.956	0/1:90:43,47:43:1544:47:1659:-121.699,0,-112.156	1/1:44:0,44:0:0:44:1545:-138.045,-13.2453,0	0/1:2:1,1:1:36:1:36:-2.98442,0,-2.99621	1/1:72:4,68:4:144:68:2418:-203.623,-8.36054,0	0/1:29:10,19:10:356:19:672:-51.7665,0,-23.6514	0/1:103:53,50:53:1888:50:1782:-128.835,0,-139.192	0/1:46:23,23:23:824:23:824:-60.3426,0,-60.5472	0/1:56:29,27:29:1040:27:968:-70.3257,0,-77.0543	0/1:45:21,24:21:740:24:852:-62.7428,0,-53.3632	1/1:77:0,77:0:0:77:2743:-244.888,-23.1793,0	1/1:161:0,161:0:0:161:5741:-515.232,-48.4658,0	1/1:50:0,50:0:0:50:1774:-159.091,-15.0515,0	1/1:102:0,102:0:0:102:3635:-325.917,-30.7051,0	0/1:139:67,72:67:2366:72:2567:-188.932,0,-171.348	1/1:4:0,4:0:0:4:144:-13.2883,-1.20412,0	1/1:63:0,63:0:0:63:2240:-200.664,-18.9649,0	0/1:71:42,29:42:1504:29:1044:-72.3391,0,-114.28	1/1:7:0,7:0:0:7:248:-22.4248,-2.10721,0	0/1:119:65,54:65:2324:54:1936:-137.481,0,-173.593	1/1:21:0,21:0:0:21:738:-66.6139,-6.32163,0	0/1:8:6,2:6:216:2:72:-4.40643,0,-17.3814	0/1:24:12,12:12:432:12:432:-31.9561,0,-31.9965	1/1:51:0,51:0:0:51:1820:-163.069,-15.3525,0	0/1:94:50,44:50:1788:44:1564:-112.334,0,-132.887	0/1:9:5,4:5:180:4:140:-10.2092,0,-13.8428	1/1:159:1,158:1:36:158:5637:-502.335,-44.2655,0	1/1:177:1,175:1:36:175:6232:-555.364,-49.7425,0	1/1:93:0,93:0:0:93:3311:-296.743,-27.9958,0	1/1:44:0,44:0:0:44:1539:-138.542,-13.2453,0	1/1:127:0,127:0:0:127:4556:-408.81,-38.2308,0	1/1:193:0,193:0:0:193:6883:-617.092,-58.0988,0	0/1:33:14,19:14:504:19:660:-49.3752,0,-35.7548	1/1:56:0,56:0:0:56:1952:-173.685,-16.8577,0	1/1:32:0,32:0:0:32:1136:-101.956,-9.63296,0	0/1:17:10,7:10:356:7:252:-17.8676,0,-27.072	1/1:53:0,53:0:0:53:1859:-166.743,-15.9546,0	0/1:149:66,83:66:2368:83:2963:-220.334,0,-168.049	0/1:104:44,60:44:1562:60:2127:-158.857,0,-109.549	0/1:143:98,45:98:3516:45:1573:-97.7614,0,-273.566	1/1:36:0,36:0:0:36:1277:-113.248,-10.8371,0	1/1:90:1,88:1:36:88:3138:-277.183,-23.5522,0	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6609	1/1:78:0,78:0:0:78:2779:-248.072,-23.4803,0	1/1:70:0,70:0:0:70:2464:-220.578,-21.0721,0	0/1:195:100,94:100:3564:94:3355:-242.516,0,-262.21	1/1:67:0,67:0:0:67:2369:-212.72,-20.169,0	1/1:53:0,53:0:0:53:1880:-169.032,-15.9546,0	0/1:29:13,16:13:464:16:567:-42.3891,0,-33.3653	1/1:135:2,133:2:72:133:4688:-413.324,-33.8023,0	0/1:23:11,12:11:396:12:420:-31.0294,0,-29.0567	1/1:59:1,58:1:36:58:2031:-178.008,-14.1625,0	0/1:67:28,39:28:1000:39:1380:-103.365,0,-70.1382	1/1:23:0,23:0:0:23:812:-72.7473,-6.92369,0	0/1:85:44,41:44:1553:41:1424:-102.255,0,-114.46	0/1:88:59,29:59:2108:29:1044:-67.5957,0,-163.499	1/1:107:0,106:0:0:106:3773:-338.621,-31.9092,0	1/1:100:1,99:1:32:99:3499:-311.094,-26.9037,0
chr06	591541	.	G	A	16175.7	PASS	AB=0.439498;ABP=81.5744;AC=43;AF=0.231183;AN=186;AO=1098;CIGAR=1X;DP=5732;DPB=5732;DPRA=1.10514;EPP=2233.5;EPPR=9472.79;GTI=3;LEN=1;MEANALT=1.07547;MQM=59.684;MQMR=59.938;NS=93;NUMALT=1;ODDS=0.152369;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37396;QR=164558;RO=4629;RPL=18;RPP=2233.5;RPPR=9481.22;RPR=1080;RUN=1;SAF=1098;SAP=2387.29;SAR=0;SRF=4628;SRP=10046.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.201	0/1:50:27,23:27:960:23:759:-53.5681,0,-71.6648	0/0:96:96,0:96:3419:0:0:0,-28.8989,-307.925	0/1:42:21,21:21:740:21:740:-54.2801,0,-54.2801	0/1:27:10,17:10:351:17:572:-43.6696,0,-23.7989	0/1:82:43,38:43:1510:38:1311:-93.7005,0,-111.605	0/1:75:45,30:45:1592:30:1044:-71.6924,0,-120.993	0/1:65:33,32:33:1188:32:1111:-80.7292,0,-87.6616	0/1:83:45,38:45:1596:38:1274:-89.9242,0,-118.945	0/1:55:35,20:35:1219:20:680:-44.9477,0,-93.4528	0/0:61:61,0:61:2161:0:0:0,-18.3628,-194.72	0/1:47:29,18:29:1036:18:609:-40.98,0,-79.4055	0/1:64:36,28:36:1284:28:954:-66.9014,0,-96.5975	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/1:42:23,19:23:820:19:643:-45.5444,0,-61.4793	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/1:32:18,14:18:636:14:467:-32.7167,0,-47.9351	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/0:117:116,1:116:4138:1:32:0,-32.0212,-369.405	0/0:108:108,0:108:3825:0:0:0,-32.5112,-344.449	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:38:27,11:27:960:11:383:-23.3641,0,-75.2771	0/1:61:25,36:25:875:36:1260:-95.3171,0,-60.7033	0/0:84:84,0:84:2976:0:0:0,-25.2865,-268.072	0/0:147:146,1:146:5173:1:32:0,-41.0521,-462.515	0/1:98:58,40:58:2072:40:1340:-91.3924,0,-157.25	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.39	0/1:164:104,60:104:3716:60:2032:-133.777,0,-285.273	0/0:97:95,2:95:3378:2:72:0,-22.3632,-297.4	0/0:67:66,1:66:2328:1:32:0,-16.9697,-206.582	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	.:.:.:.:.:.:.:.	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:97:55,42:55:1960:42:1411:-98.0803,0,-147.476	0/1:100:55,45:55:1964:45:1510:-105.991,0,-146.932	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:82:82,0:82:2902:0:0:0,-24.6845,-261.417	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/1:81:42,39:42:1471:39:1309:-93.6754,0,-108.3	0/1:52:24,28:24:855:28:944:-69.6122,0,-61.6166	0/1:34:20,14:20:712:14:461:-31.567,0,-54.1716	0/1:54:19,35:19:657:35:1204:-92.4066,0,-43.1946	0/0:50:50,0:50:1758:0:0:0,-15.0515,-158.502	0/0:150:150,0:150:5342:0:0:0,-45.1545,-480.84	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.606	0/0:81:79,2:79:2787:2:72:0,-17.5467,-244.233	0/1:84:53,31:53:1859:31:1058:-70.2375,0,-142.302	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:85:85,0:85:3027:0:0:0,-25.5875,-272.661	0/1:44:28,16:28:991:16:552:-36.7603,0,-76.2573	0/1:13:6,7:6:212:7:235:-17.4939,0,-15.5114	0/1:56:27,28:27:964:28:959:-69.6339,0,-70.1604	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1221	0/1:3:1,2:1:36:2:64:-5.1756,0,-2.69518	0/1:7:5,2:5:176:2:68:-4.3505,0,-14.0778	0/0:69:69,0:69:2447:0:0:0,-20.7711,-220.485	0/1:83:52,31:52:1839:31:1050:-69.8032,0,-140.804	0/1:10:4,6:4:144:6:212:-16.4141,0,-10.3033	0/0:105:104,0:104:3708:0:0:0,-31.3071,-333.411	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.534	0/0:52:52,0:52:1841:0:0:0,-15.6536,-165.968	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/0:78:77,1:77:2729:1:36:0,-19.8821,-242.254	0/0:135:133,1:133:4746:1:36:0,-37.0996,-423.21	0/1:36:24,12:24:851:12:397:-25.2112,0,-66.0724	0/0:52:52,0:52:1864:0:0:0,-15.6536,-167.989	0/0:48:47,1:47:1684:1:36:0,-10.8512,-148.249	0/1:8:3,5:3:108:5:172:-13.4093,0,-7.66693	0/0:88:88,0:88:3132:0:0:0,-26.4906,-282.108	0/1:83:52,31:52:1855:31:1084:-72.8811,0,-142.244	0/1:118:58,59:58:2034:59:1994:-143.277,0,-147.751	0/1:103:65,38:65:2324:38:1290:-85.3873,0,-178.414	0/0:94:94,0:94:3355:0:0:0,-28.2968,-301.61	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:7:5,2:5:176:2:68:-4.3505,0,-14.0778	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.549	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.017	0/1:95:49,46:49:1752:46:1600:-115.688,0,-129.366	0/0:60:60,0:60:2118:0:0:0,-18.0618,-190.888	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.942	0/1:45:19,26:19:684:26:871:-65.1499,0,-48.344	0/0:84:83,1:83:2943:1:32:0,-22.0872,-261.85	0/1:21:16,5:16:572:5:172:-9.49634,0,-45.4918	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.864	0/1:56:34,22:34:1212:22:759:-51.77,0,-92.5286	0/0:66:66,0:66:2350:0:0:0,-19.868,-211.758	0/1:105:65,40:65:2310:40:1357:-90.8133,0,-176.539	0/1:46:19,27:19:684:27:932:-70.3447,0,-48.0429	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/0:81:80,1:80:2838:1:36:0,-20.7856,-252.061
chr06	626572	.	T	C	34020.3	PASS	AB=0.438827;ABP=119.375;AC=42;AF=0.225806;AN=186;AO=1587;CIGAR=1X;DP=8749;DPB=8749;DPRA=0.993572;EPP=58.2905;EPPR=963.917;GTI=1;LEN=1;MEANALT=1.01923;MQM=59.9572;MQMR=59.9816;NS=93;NUMALT=1;ODDS=0.143791;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56488;QR=253807;RO=7160;RPL=4;RPP=3414.48;RPPR=15438;RPR=1583;RUN=1;SAF=898;SAP=62.7785;SAR=689;SRF=4483;SRP=992.194;SRR=2677;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:66:66,0:66:2336:0:0:0,-19.868,-210.501	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:153:91,62:91:3224:62:2215:-153.556,0,-244.327	0/0:225:225,0:225:8005:0:0:0,-67.7317,-720.474	0/1:50:40,10:40:1428:10:347:-16.5121,0,-113.766	0/1:52:33,19:33:1168:19:676:-45.5144,0,-89.7737	0/1:78:41,37:41:1455:37:1316:-95.2615,0,-107.765	0/1:146:82,64:82:2924:64:2284:-161.872,0,-218.256	0/1:106:65,41:65:2303:41:1468:-100.507,0,-175.622	0/1:79:46,33:46:1627:33:1172:-82.0061,0,-122.937	0/1:79:48,31:48:1663:31:1108:-76.2365,0,-126.172	0/0:115:115,0:115:4036:0:0:0,-34.6184,-363.437	0/1:99:47,51:47:1672:51:1806:-132.959,0,-120.907	0/1:77:42,35:42:1471:35:1244:-89.0854,0,-109.504	0/0:87:87,0:87:3055:0:0:0,-26.1896,-275.18	0/1:81:46,35:46:1621:35:1226:-86.2588,0,-121.794	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/1:52:31,21:31:1100:21:728:-50.1841,0,-83.6567	0/0:28:28,0:28:987:0:0:0,-8.42884,-89.143	0/0:162:162,0:162:5755:0:0:0,-48.7669,-518.068	0/0:142:142,0:142:4995:0:0:0,-42.7463,-449.702	0/0:114:114,0:114:4040:0:0:0,-34.3174,-363.781	0/1:74:52,22:52:1845:22:784:-48.6077,0,-144.052	0/1:48:37,11:37:1296:11:392:-21.1706,0,-102.489	0/0:86:85,1:85:3002:1:36:0,-22.2903,-266.815	0/0:261:261,0:261:9211:0:0:0,-78.5688,-828.977	0/1:204:113,91:113:3989:91:3245:-230.862,0,-297.794	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/1:198:111,87:111:3951:87:3115:-220.972,0,-296.179	0/0:148:147,1:147:5207:1:36:0,-40.9542,-465.177	0/0:113:111,2:111:3960:2:72:0,-27.1797,-349.756	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:203:104,99:104:3691:99:3534:-257.16,0,-271.286	0/1:44:30,14:30:1031:14:496:-31.7289,0,-79.8496	0/0:45:45,0:45:1596:0:0:0,-13.5463,-143.93	.:.:.:.:.:.:.:.	0/0:136:135,1:135:4763:1:36:0,-37.3418,-425.234	0/0:34:34,0:34:1188:0:0:0,-10.235,-107.225	0/1:144:90,54:90:3177:54:1917:-129.451,0,-242.808	0/1:58:35,23:35:1260:23:820:-56.6628,0,-96.2457	0/1:72:37,35:37:1320:35:1247:-90.8599,0,-97.4278	0/1:93:57,36:57:2008:36:1266:-86.2453,0,-152.998	0/0:122:122,0:122:4364:0:0:0,-36.7257,-392.829	0/0:158:158,0:158:5591:0:0:0,-47.5627,-503.311	0/0:92:92,0:92:3263:0:0:0,-27.6948,-293.892	0/0:102:102,0:102:3640:0:0:0,-30.7051,-327.806	0/1:96:36,60:36:1268:60:2110:-161.269,0,-85.5238	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:104:104,0:104:3704:0:0:0,-31.3071,-333.557	0/1:76:41,35:41:1441:35:1233:-88.3851,0,-107.106	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:113:71,42:71:2496:42:1484:-99.8381,0,-190.876	0/0:40:40,0:40:1414:0:0:0,-12.0412,-127.556	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:13:8,5:8:269:5:176:-12.2716,0,-20.6227	0/0:90:90,0:90:3185:0:0:0,-27.0927,-286.875	0/1:90:50,40:50:1776:40:1439:-102.715,0,-133.03	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:174:174,0:174:6200:0:0:0,-52.3792,-558.101	0/0:153:152,1:152:5338:1:36:0,-42.4593,-476.964	0/0:59:59,0:59:2096:0:0:0,-17.7608,-188.91	0/0:74:74,0:74:2616:0:0:0,-22.2762,-235.687	0/0:176:173,3:173:6148:3:108:0,-42.9061,-543.327	0/0:163:162,1:162:5750:1:36:0,-45.4696,-514.023	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.864	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.341	0/1:13:9,4:9:312:4:144:-9.40023,0,-24.502	0/0:107:107,0:107:3792:0:0:0,-32.2102,-341.482	0/1:120:58,62:58:2048:62:2220:-163.935,0,-148.469	0/1:146:86,60:86:3064:60:2144:-149.277,0,-232.04	0/1:145:79,66:79:2795:66:2347:-167.817,0,-208.14	0/0:138:138,0:138:4944:0:0:0,-41.5421,-445.109	0/0:123:121,2:121:4316:2:72:0,-30.19,-381.781	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:129:129,0:129:4553:0:0:0,-38.8329,-409.939	0/0:187:187,0:187:6661:0:0:0,-56.2926,-599.57	0/1:178:97,81:97:3435:81:2890:-206.752,0,-255.625	0/0:198:197,0:197:7008:0:0:0,-59.3029,-630.427	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.489	0/1:58:33,25:33:1160:25:888:-62.7793,0,-87.2469	0/0:133:130,3:130:4619:3:108:0,-29.9618,-405.802	0/1:26:8,18:8:288:18:631:-49.2889,0,-18.4406	0/0:67:66,1:66:2360:1:36:0,-16.5707,-209.06	0/1:84:50,34:50:1772:34:1212:-84.0983,0,-134.477	0/0:55:55,0:55:1943:0:0:0,-16.5566,-175.141	0/1:109:53,56:53:1820:56:2004:-147.821,0,-131.264	0/1:74:29,45:29:1044:45:1616:-123.454,0,-71.9986	0/0:148:148,0:148:5264:0:0:0,-44.5524,-473.898	0/0:110:110,0:110:3903:0:0:0,-33.1133,-351.466
chr06	626634	.	A	G	19087.2	PASS	AB=0.502422;ABP=3.126;AC=42;AF=0.225806;AN=186;AO=1156;CIGAR=1X;DP=5216;DPB=5216;DPRA=1.09033;EPP=2513.23;EPPR=8817.02;GTI=0;LEN=1;MEANALT=1.02;MQM=59.9429;MQMR=59.9855;NS=93;NUMALT=1;ODDS=6.05027;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41365;QR=145438;RO=4059;RPL=1156;RPP=2513.23;RPPR=8817.02;RPR=0;RUN=1;SAF=0;SAP=2513.23;SAR=1156;SRF=0;SRP=8817.02;SRR=4059;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1812:0:0:0,-15.3525,-163.362	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:98:41,57:41:1472:57:2044:-154.731,0,-103.275	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.143	0/1:33:15,18:15:528:18:644:-48.3566,0,-37.9174	0/1:14:4,10:4:140:10:360:-28.5299,0,-8.73016	0/1:59:23,36:23:824:36:1292:-98.823,0,-56.7225	0/1:91:47,44:47:1688:44:1564:-113.658,0,-124.813	0/1:50:32,18:32:1140:18:648:-43.6004,0,-87.8577	0/1:66:37,29:37:1332:29:1040:-74.0464,0,-100.314	0/1:50:29,21:29:1036:21:752:-52.9548,0,-78.5024	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/1:68:35,33:35:1260:33:1156:-83.8736,0,-93.2354	0/1:69:32,37:32:1144:37:1314:-97.7908,0,-82.4984	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/1:61:27,34:27:972:34:1220:-91.744,0,-69.4351	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:34:19,15:19:684:15:540:-38.7015,0,-51.6553	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.082	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.913	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.961	0/1:37:22,15:22:788:15:532:-37.075,0,-60.1067	0/1:22:11,11:11:392:11:392:-28.9974,0,-28.9974	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.732	0/1:124:65,59:65:2324:59:2112:-152.952,0,-172.09	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:106:52,54:52:1872:54:1940:-142.967,0,-136.85	0/0:111:106,5:106:3788:5:180:0,-16.8623,-324.567	0/0:42:41,1:41:1472:1:36:0,-9.04498,-129.178	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:102:50,52:50:1800:52:1868:-137.694,0,-131.577	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0491	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	.:.:.:.:.:.:.:.	0/0:82:81,1:81:2904:1:36:0,-21.0862,-257.997	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:105:48,57:48:1716:57:2040:-152.258,0,-123.117	0/1:40:23,17:23:828:17:612:-43.3722,0,-62.8029	0/1:49:23,26:23:828:26:928:-69.0878,0,-60.0936	0/1:48:30,18:30:1072:18:640:-43.4799,0,-82.343	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.27	0/1:63:27,36:27:964:36:1292:-97.6189,0,-68.1119	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:41:29,12:29:1036:12:428:-26.5166,0,-81.2117	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:61:36,25:36:1284:25:896:-62.5975,0,-97.5006	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:66:35,31:35:1260:31:1104:-79.8027,0,-93.8375	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:103:102,1:102:3652:1:36:0,-27.4078,-325.286	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:84:81,3:81:2904:3:108:0,-15.2113,-251.52	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.974	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:84:37,46:37:1332:46:1644:-122.89,0,-94.8371	0/1:95:48,47:48:1720:47:1667:-121.718,0,-126.488	0/1:74:34,40:34:1224:40:1432:-106.879,0,-88.1908	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:71:69,2:69:2472:2:72:0,-14.5364,-215.897	0/1:18:9,9:9:324:9:316:-23.3603,0,-24.0873	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.712	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/1:114:49,65:49:1764:65:2340:-176.472,0,-124.726	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:41:24,17:24:860:17:612:-43.0712,0,-65.3796	0/0:83:82,1:82:2936:1:36:0,-21.3872,-260.876	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:66:34,32:34:1216:32:1148:-83.7603,0,-89.8786	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.224	0/1:84:48,36:48:1728:36:1288:-90.9371,0,-130.519	0/1:47:13,34:13:464:34:1220:-95.9584,0,-27.9491	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.366	0/0:69:68,1:68:2440:1:36:0,-17.1728,-216.257
chr06	690154	.	G	A	108346	PASS	AB=0.425731;ABP=162.026;AC=143;AF=0.760638;AN=188;AO=5162;CIGAR=1X;DP=7095;DPB=7095;DPRA=0;EPP=11212.2;EPPR=4163.62;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9523;MQMR=59.9389;NS=94;NUMALT=1;ODDS=2.35389;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184578;QR=69216;RO=1932;RPL=0;RPP=11212.2;RPPR=4163.62;RPR=5162;RUN=1;SAF=0;SAP=11212.2;SAR=5162;SRF=0;SRP=4198.29;SRR=1932;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:105:0,105:0:0:105:3755:-338.132,-31.6082,0	0/1:130:75,55:75:2696:55:1958:-137.331,0,-203.749	1/1:90:0,90:0:0:90:3212:-289.302,-27.0927,0	0/1:49:31,18:31:1112:18:648:-43.9014,0,-85.6409	0/1:62:31,31:31:1112:31:1105:-81.0967,0,-81.6917	0/1:101:49,52:49:1752:52:1860:-137.206,0,-127.554	0/1:136:99,37:99:3531:37:1328:-78.8822,0,-277.059	0/1:82:41,41:41:1476:41:1472:-108.092,0,-108.452	0/1:89:51,38:51:1804:38:1364:-96.269,0,-135.847	0/1:34:23,11:23:828:11:392:-25.385,0,-64.6091	1/1:29:0,29:0:0:29:1035:-93.4631,-8.72987,0	0/1:28:13,15:13:455:15:536:-40.146,0,-32.8531	0/1:65:46,19:46:1648:19:680:-41.9622,0,-129.037	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:25:17,8:17:608:8:284:-18.3776,0,-47.5263	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:46:25,21:25:900:21:756:-54.5198,0,-67.4736	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:221:1,220:1:36:220:7880:-705.62,-62.9294,0	0/1:111:55,56:55:1976:56:2008:-147.579,0,-144.7	1/1:101:0,101:0:0:101:3599:-324.117,-30.404,0	0/1:51:31,20:31:1112:20:712:-49.0541,0,-85.0388	0/1:101:47,54:47:1688:54:1936:-144.112,0,-121.775	1/1:73:0,73:0:0:73:2607:-234.82,-21.9752,0	1/1:189:1,188:1:36:188:6730:-602.173,-53.2964,0	0/1:171:92,79:92:3296:79:2811:-201.754,0,-245.193	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	0/1:185:116,68:116:4163:68:2430:-163.206,0,-319.102	1/1:104:6,98:6:216:98:3487:-294.252,-11.5166,0	1/1:125:3,122:3:108:122:4342:-380.85,-27.5536,0	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:8:4,4:4:135:4:144:-10.9054,0,-10.0743	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:79:43,36:43:1548:36:1276:-91.2031,0,-115.832	0/1:231:148,83:148:5295:83:2971:-198.084,0,-407.133	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:79:2,77:2:72:77:2760:-241.805,-16.9446,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:136:77,59:77:2755:59:2116:-149.769,0,-207.248	0/1:26:19,7:19:680:7:252:-15.2022,0,-53.7024	0/1:30:19,11:19:680:11:383:-25.7476,0,-52.4983	0/1:83:40,43:40:1440:43:1539:-113.817,0,-104.912	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:149:0,149:0:0:149:5337:-480.454,-44.8535,0	1/1:136:0,136:0:0:136:4874:-438.802,-40.9401,0	1/1:113:0,113:0:0:113:4048:-364.507,-34.0164,0	0/1:182:111,71:111:3992:71:2544:-174.423,0,-304.681	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:223:0,223:0:0:223:7995:-719.547,-67.1297,0	0/1:55:38,17:38:1368:17:608:-38.4954,0,-106.864	0/1:38:16,22:16:576:22:788:-59.8057,0,-40.7358	0/1:100:44,56:44:1576:56:2008:-150.89,0,-112.029	1/1:21:0,21:0:0:21:739:-66.8324,-6.32163,0	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:26:18,8:18:648:8:284:-18.0766,0,-50.8251	1/1:96:0,96:0:0:96:3432:-309.094,-28.8989,0	0/1:85:49,36:49:1760:36:1292:-90.9962,0,-133.096	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:162:1,161:1:36:161:5761:-515.006,-45.1686,0	1/1:136:0,136:0:0:136:4888:-439.94,-40.9401,0	1/1:75:0,75:0:0:75:2666:-240.185,-22.5773,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:128:6,122:6:212:122:4375:-374.497,-19.107,0	1/1:139:3,136:3:108:136:4864:-427.836,-31.768,0	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	1/1:70:0,70:0:0:70:2488:-224.171,-21.0721,0	1/1:58:0,58:0:0:58:2051:-184.854,-17.4597,0	0/1:33:10,23:10:360:23:824:-64.5493,0,-22.8103	1/1:104:0,104:0:0:104:3722:-335.175,-31.3071,0	0/1:58:40,18:40:1436:18:644:-40.8309,0,-112.078	0/1:131:72,59:72:2569:59:2101:-149.923,0,-191.986	0/1:169:85,84:85:3060:84:3012:-220.437,0,-224.754	1/1:117:0,117:0:0:117:4172:-375.645,-35.2205,0	1/1:69:1,68:1:36:68:2436:-215.897,-17.1728,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1321	1/1:73:1,72:1:36:72:2580:-228.851,-18.3769,0	1/1:78:0,78:0:0:78:2773:-249.81,-23.4803,0	0/1:152:89,63:89:3200:63:2262:-158.083,0,-242.466	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:24:13,11:13:464:11:390:-28.2137,0,-34.8728	1/1:53:2,51:2:72:51:1828:-157.964,-9.11787,0	0/1:14:8,6:8:279:6:216:-15.5761,0,-21.2316	1/1:27:0,27:0:0:27:945:-85.3622,-8.12781,0	0/1:47:31,16:31:1093:16:576:-38.0266,0,-84.5293	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:45:25,20:25:900:20:716:-51.2214,0,-67.7747	0/1:42:33,9:33:1165:9:320:-16.4991,0,-92.5117	1/1:136:0,136:0:0:136:4859:-437.462,-40.9401,0	1/1:28:0,28:0:0:28:974:-87.9707,-8.42884,0
chr06	690190	.	A	G	23453.1	PASS	AB=0.496288;ABP=3.3488;AC=45;AF=0.239362;AN=188;AO=1421;CIGAR=1X;DP=6656;DPB=6656;DPRA=1.10479;EPP=3088.67;EPPR=11370.7;GTI=1;LEN=1;MEANALT=1;MQM=59.9275;MQMR=59.9563;NS=94;NUMALT=1;ODDS=0.595632;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50892;QR=187627;RO=5235;RPL=1421;RPP=3088.67;RPPR=11370.7;RPR=0;RUN=1;SAF=0;SAP=3088.67;SAR=1421;SRF=0;SRP=11370.7;SRR=5235;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:110:110,0:110:3917:0:0:0,-33.1133,-352.716	0/1:110:54,56:54:1944:56:2008:-147.88,0,-141.895	0/0:93:93,0:93:3306:0:0:0,-27.9958,-297.757	0/1:44:18,26:18:648:26:932:-70.9535,0,-45.4066	0/1:50:30,20:30:1068:20:712:-49.3193,0,-81.3806	0/1:87:50,37:50:1796:37:1308:-91.8257,0,-135.663	0/1:113:39,74:39:1396:74:2644:-204.191,0,-91.9227	0/1:72:41,31:41:1476:31:1108:-78.3568,0,-111.462	0/1:64:38,26:38:1368:26:932:-64.9329,0,-104.155	0/1:34:11,23:11:396:23:828:-64.6091,0,-25.7477	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:26:14,12:14:504:12:428:-31.032,0,-37.8713	0/1:63:20,43:20:712:43:1536:-119.566,0,-45.4418	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:25:9,16:9:324:16:572:-44.2877,0,-21.9801	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.649	0/1:46:21,25:21:738:25:900:-67.4736,0,-52.894	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:229:228,1:228:8169:1:36:0,-65.3376,-731.617	0/1:83:56,27:56:2012:27:956:-61.3702,0,-156.368	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.538	0/1:41:20,21:20:720:21:752:-55.664,0,-52.7865	0/1:90:55,35:55:1968:35:1256:-86.2242,0,-150.302	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.529	0/0:191:190,1:190:6813:1:36:0,-53.8985,-609.639	0/1:146:80,66:80:2876:66:2356:-168.159,0,-215.126	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:151:69,82:69:2472:82:2944:-219.738,0,-177.278	0/0:103:97,6:97:3469:6:216:0,-11.2156,-292.63	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.642	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:81:35,46:35:1256:46:1640:-123.505,0,-88.9619	0/1:195:89,106:89:3173:106:3808:-284.216,0,-227.093	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:105:58,47:58:2088:47:1688:-120.576,0,-156.582	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.5032	0/1:31:12,19:12:428:19:684:-52.5584,0,-29.3673	0/1:74:44,30:44:1580:30:1064:-73.7954,0,-120.215	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:151:151,0:151:5404:0:0:0,-45.4555,-486.483	0/0:134:134,0:134:4820:0:0:0,-40.338,-433.948	0/0:114:114,0:114:4077:0:0:0,-34.3174,-367.115	0/1:136:71,65:71:2548:65:2336:-169.559,0,-188.63	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:227:227,0:227:8156:0:0:0,-68.3338,-734.027	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	0/1:34:21,13:21:756:13:464:-31.8625,0,-58.1322	0/1:79:55,24:55:1964:24:864:-54.3012,0,-153.251	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:23:8,15:8:284:15:536:-41.6511,0,-18.9797	0/0:96:96,0:96:3429:0:0:0,-28.8989,-308.822	0/1:85:37,48:37:1332:48:1724:-129.858,0,-94.5948	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:167:166,1:166:5941:1:36:0,-46.6737,-531.198	0/0:143:143,0:143:5136:0:0:0,-43.0473,-462.323	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/0:130:125,5:125:4480:5:176:0,-22.9489,-387.184	0/0:140:139,1:139:4972:1:36:0,-38.5459,-444.031	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.649	0/1:29:24,5:24:856:5:180:-7.82219,0,-68.6312	0/0:109:109,0:109:3884:0:0:0,-32.8123,-349.749	0/1:45:19,26:19:684:26:932:-70.6525,0,-48.344	0/1:120:61,59:61:2192:59:2116:-154.549,0,-161.422	0/1:134:82,52:82:2948:52:1872:-128.421,0,-225.215	0/0:119:119,0:119:4261:0:0:0,-35.8226,-383.649	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:17:9,8:9:324:8:284:-20.768,0,-24.3883	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/1:119:63,56:63:2260:56:2012:-145.531,0,-167.838	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/0:56:54,2:54:1944:2:72:0,-10.021,-168.399	0/1:14:6,8:6:216:8:288:-22.0514,0,-15.5761	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:49:17,32:17:612:32:1140:-88.1587,0,-40.663	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:47:22,25:22:792:25:896:-66.8119,0,-57.4573	0/1:40:8,32:8:288:32:1136:-90.5077,0,-14.2262	0/0:140:140,0:140:4998:0:0:0,-42.1442,-449.963	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979
chr06	768692	.	TGAGT	CGAGT	126617	PASS	AB=0.498105;ABP=3.12552;AC=139;AF=0.747312;AN=186;AO=5891;CIGAR=1X4M;DP=7804;DPB=7804.2;DPRA=84.8152;EPP=12613.4;EPPR=3979.21;GTI=3;LEN=1;MEANALT=1.52174;MQM=59.9966;MQMR=59.9989;NS=93;NUMALT=1;ODDS=0.319051;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=16;PQR=0;PRO=0;QA=209135;QR=65379;RO=1859;RPL=5811;RPP=12109.7;RPPR=3825.55;RPR=80;RUN=1;SAF=5832;SAP=12287.8;SAR=59;SRF=1841;SRP=3884.95;SRR=18;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,49:0:0:49:1734:-156.056,-14.7505,0	1/1:96:0,93:0:0:93:3291:-296.101,-27.9958,0	0/1:132:59,73:59:2083:73:2616:-195.952,0,-148.004	1/1:164:0,163:0:0:163:5784:-520.318,-49.0679,0	0/1:73:29,44:29:1023:44:1548:-117.634,0,-70.4072	0/1:24:8,16:8:287:16:556:-43.1425,0,-18.9518	0/1:49:23,26:23:796:26:932:-69.362,0,-57.205	0/1:98:47,50:47:1642:50:1770:-130.091,0,-118.573	0/1:91:49,41:49:1737:41:1455:-103.929,0,-129.298	0/1:83:47,36:47:1653:36:1262:-88.8955,0,-124.071	0/1:86:51,34:51:1788:34:1186:-81.0956,0,-135.253	1/1:114:0,114:0:0:114:4028:-362.708,-34.3174,0	0/1:96:48,48:48:1708:48:1706:-124.925,0,-125.107	0/1:53:25,28:25:887:28:1000:-74.3608,0,-64.1941	1/1:103:0,103:0:0:103:3664:-329.963,-31.0061,0	0/1:63:29,34:29:1028:34:1224:-91.5022,0,-73.8677	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:29:18,11:18:643:11:390:-26.7089,0,-49.4703	1/1:38:0,38:0:0:38:1332:-120.177,-11.4391,0	1/1:164:1,162:1:36:162:5738:-513.006,-45.7645,0	0/1:139:65,73:65:2278:73:2594:-191.806,0,-163.379	1/1:66:0,66:0:0:66:2329:-209.869,-19.868,0	0/1:107:49,56:49:1699:56:1974:-145.966,0,-121.225	0/1:63:28,35:28:978:35:1256:-94.3804,0,-69.3663	1/1:100:3,97:3:108:97:3430:-298.839,-20.0278,0	1/1:177:2,174:2:72:174:6194:-550.76,-46.4312,0	0/1:212:98,112:98:3443:112:3960:-293.017,0,-246.508	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:174:102,72:102:3601:72:2558:-178.091,0,-271.918	0/1:60:28,28:28:967:28:1004:-73.4869,0,-70.1518	1/1:139:0,137:0:0:137:4875:-438.663,-41.2411,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	.:.:.:.:.:.:.:.	0/1:7:2,5:2:67:5:162:-12.7916,0,-4.25563	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	0/1:181:100,81:100:3452:81:2892:-206.03,0,-256.41	0/1:84:39,44:39:1370:44:1533:-112.914,0,-98.2517	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	0/1:6:2,4:2:71:4:144:-11.5074,0,-4.93588	1/1:61:1,59:1:36:59:2066:-182.678,-14.7534,0	1/1:41:0,41:0:0:41:1442:-130.073,-12.3422,0	0/1:145:79,66:79:2765:66:2321:-165.498,0,-205.443	0/1:65:34,31:34:1202:31:1092:-79.0199,0,-88.918	0/1:64:34,29:34:1176:29:1040:-74.7055,0,-86.9336	0/1:117:53,64:53:1896:64:2296:-171.621,0,-135.639	1/1:137:2,134:2:72:134:4754:-421.204,-34.4233,0	1/1:145:2,143:2:72:143:5095:-451.856,-36.8126,0	1/1:106:0,105:0:0:105:3737:-336.279,-31.6082,0	1/1:138:0,137:0:0:137:4870:-438.175,-41.2411,0	0/1:55:26,29:26:920:29:1036:-76.9973,0,-66.5597	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:146:1,144:1:36:144:5107:-456.177,-40.4109,0	0/1:62:23,39:23:812:39:1368:-104.752,0,-54.7354	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:129:66,61:66:2301:61:2146:-154.816,0,-168.758	1/1:20:1,19:1:36:19:671:-57.1175,-2.42233,0	0/1:9:4,5:4:136:5:172:-13.1087,0,-9.86613	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	1/1:76:0,75:0:0:75:2649:-238.298,-22.5773,0	0/1:97:48,49:48:1685:49:1760:-129.484,0,-122.735	0/1:6:1,5:1:35:5:172:-14.0118,0,-1.69245	1/1:130:0,130:0:0:130:4601:-414.258,-39.1339,0	1/1:149:3,145:3:103:145:5176:-456.366,-35.2985,0	1/1:65:0,61:0:0:61:2174:-195.608,-18.3628,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	1/1:166:3,161:3:108:161:5710:-503.954,-39.6416,0	1/1:149:1,147:1:36:147:5210:-465.443,-41.314,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:39:0,38:0:0:38:1348:-121.338,-11.4391,0	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	0/1:23:16,7:16:569:7:235:-14.5543,0,-44.6182	1/1:79:0,79:0:0:79:2796:-251.88,-23.7814,0	0/1:85:48,37:48:1699:37:1311:-92.7033,0,-127.608	0/1:182:81,99:81:2854:99:3527:-263.095,0,-202.552	0/1:153:68,85:68:2424:85:3041:-227.862,0,-172.359	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:103:3,100:3:108:100:3560:-310.535,-20.9309,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:83:0,83:0:0:83:2954:-266.093,-24.9855,0	1/1:103:0,102:0:0:102:3619:-325.617,-30.7051,0	0/1:213:86,124:86:3033:124:4434:-335.69,0,-209.662	1/1:63:2,59:2:52:59:2095:-183.83,-13.7332,0	1/1:90:0,90:0:0:90:3223:-290.291,-27.0927,0	0/1:62:34,28:34:1190:28:981:-69.9372,0,-88.7402	1/1:129:2,127:2:72:127:4503:-398.603,-31.9961,0	0/1:35:18,17:18:643:17:593:-43.1587,0,-47.6641	1/1:76:0,76:0:0:76:2696:-242.883,-22.8783,0	0/1:85:44,41:44:1567:41:1448:-105.026,0,-115.734	1/1:42:0,41:0:0:41:1467:-132.034,-12.3422,0	0/1:96:60,35:60:2091:35:1237:-82.801,0,-159.628	0/1:87:57,29:57:2017:29:1018:-65.6823,0,-155.554	1/1:128:0,127:0:0:127:4523:-406.878,-38.2308,0	1/1:114:0,113:0:0:113:4038:-363.327,-34.0164,0
chr06	773651	.	T	A	63865.5	PASS	AB=0.557916;ABP=145.626;AC=50;AF=0.265957;AN=188;AO=2763;CIGAR=1X;DP=9591;DPB=9591;DPRA=1.17139;EPP=5994.11;EPPR=7332.61;GTI=1;LEN=1;MEANALT=1.07143;MQM=59.937;MQMR=59.9946;NS=94;NUMALT=1;ODDS=2.38595;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97940;QR=242339;RO=6823;RPL=1277;RPP=37.3397;RPPR=300.61;RPR=1486;RUN=1;SAF=1276;SAP=37.9998;SAR=1487;SRF=2883;SRP=358.583;SRR=3940;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/1:146:70,76:70:2477:76:2691:-198.485,0,-179.23	0/0:192:191,1:191:6767:1:36:0,-54.1995,-605.511	0/1:54:31,23:31:1099:23:820:-57.8669,0,-82.9638	0/1:51:30,21:30:1050:21:730:-50.6661,0,-79.4537	0/1:100:48,52:48:1724:52:1826:-134.515,0,-125.342	0/1:139:65,73:65:2316:73:2607:-191.982,0,-166.799	0/1:173:87,86:87:3111:86:3037:-221.48,0,-228.138	0/1:120:48,72:48:1716:72:2527:-191.557,0,-118.602	0/1:86:40,46:40:1427:46:1636:-121.64,0,-102.838	0/0:161:160,0:160:5706:0:0:0,-48.1648,-513.339	0/1:172:78,93:78:2760:93:3267:-242.416,0,-196.805	0/1:105:48,57:48:1711:57:2032:-151.544,0,-122.667	0/0:132:132,0:132:4654:0:0:0,-39.736,-419.023	0/1:102:49,53:49:1756:53:1891:-139.763,0,-127.619	0/0:59:59,0:59:2066:0:0:0,-17.7608,-186.21	0/1:85:50,35:50:1788:35:1248:-87.0292,0,-135.615	0/0:51:51,0:51:1792:0:0:0,-15.3525,-161.559	0/0:123:123,0:123:4331:0:0:0,-37.0267,-389.967	0/1:202:78,124:78:2796:124:4407:-335.966,0,-191.072	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:129:60,69:60:2136:69:2455:-182.372,0,-153.675	0/1:67:38,29:38:1332:29:1022:-72.1165,0,-100.008	0/0:85:85,0:85:3008:0:0:0,-25.5875,-270.951	0/0:213:213,0:213:7577:0:0:0,-64.1194,-681.974	0/1:155:60,95:60:2125:95:3395:-259.105,0,-144.857	0/0:62:62,0:62:2194:0:0:0,-18.6639,-197.725	0/1:229:62,167:62:2208:167:5911:-463.166,0,-130.049	0/1:128:53,75:53:1892:75:2651:-200.305,0,-132.026	0/0:113:113,0:113:4024:0:0:0,-34.0164,-362.348	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:274:117,157:117:4140:157:5570:-418.943,0,-290.304	0/1:82:29,53:29:1040:53:1878:-144.613,0,-69.2299	0/0:81:81,0:81:2808:0:0:0,-24.3834,-252.958	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:133:131,2:131:4646:2:72:0,-33.2003,-411.466	0/0:43:43,0:43:1516:0:0:0,-12.9443,-136.73	0/1:221:107,114:107:3792:114:4023:-295.733,0,-274.952	0/1:104:43,61:43:1509:61:2151:-162.547,0,-104.794	0/1:105:50,55:50:1775:55:1938:-143.084,0,-128.424	0/1:114:43,71:43:1548:71:2540:-194.532,0,-105.296	0/0:118:117,1:117:4150:1:36:0,-31.9233,-370.088	0/0:173:173,0:173:6150:0:0:0,-52.0782,-553.601	0/0:64:64,0:64:2269:0:0:0,-19.2659,-204.471	0/0:89:87,2:87:3120:2:72:0,-19.9549,-274.189	0/1:40:12,28:12:424:28:996:-77.9137,0,-26.4552	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:58:57,1:57:2017:1:36:0,-13.8615,-178.203	0/1:61:17,44:17:599:44:1562:-122.507,0,-35.8753	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:107:53,54:53:1892:54:1940:-142.666,0,-138.348	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/1:142:67,75:67:2391:75:2661:-196.829,0,-172.701	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:172:170,1:170:6035:1:36:0,-48.2377,-539.659	0/0:139:134,5:134:4795:5:180:0,-25.2911,-415.154	0/0:66:66,0:66:2345:0:0:0,-19.868,-211.238	0/0:68:68,0:68:2400:0:0:0,-20.47,-216.256	0/0:182:181,1:181:6454:1:36:0,-51.1892,-577.35	0/0:137:137,0:137:4874:0:0:0,-41.2411,-438.815	0/0:73:73,0:73:2570:0:0:0,-21.9752,-231.543	0/0:38:38,0:38:1344:0:0:0,-11.4391,-121.26	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/1:34:16,18:16:576:18:644:-48.0556,0,-41.94	0/0:78:77,1:77:2742:1:22:0,-21.2804,-244.822	0/1:122:68,54:68:2413:54:1932:-137.431,0,-180.7	0/1:204:88,116:88:3143:116:4085:-306.298,0,-221.685	0/1:139:72,67:72:2562:67:2369:-171.623,0,-188.986	0/0:131:131,0:131:4661:0:0:0,-39.4349,-419.653	0/0:110:110,0:110:3921:0:0:0,-33.1133,-353.083	0/1:24:13,11:13:468:11:388:-28.0326,0,-35.2349	0/0:96:96,0:96:3427:0:0:0,-28.8989,-308.644	0/0:97:97,0:97:3456:0:0:0,-29.1999,-311.246	0/1:296:112,184:112:3995:184:6522:-497.965,0,-270.636	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:126:126,0:126:4461:0:0:0,-37.9298,-401.664	0/1:109:53,56:53:1875:56:1980:-145.651,0,-136.216	0/0:214:214,0:214:7604:0:0:0,-64.4204,-684.399	0/1:44:19,25:19:676:25:896:-67.715,0,-47.9227	0/0:118:118,0:118:4145:0:0:0,-35.5215,-373.232	0/1:124:64,60:64:2259:60:2092:-151.219,0,-166.243	0/0:71:71,0:71:2523:0:0:0,-21.3731,-227.322	0/1:134:68,66:68:2394:66:2331:-169.71,0,-175.379	0/1:130:45,84:45:1571:84:3008:-231.759,0,-102.485	0/0:154:154,0:154:5483:0:0:0,-46.3586,-493.598	0/0:193:193,0:193:6826:0:0:0,-58.0988,-614.415
chr06	773663	.	G	C	25435.8	PASS	AB=0.551672;ABP=64.0491;AC=50;AF=0.265957;AN=188;AO=1476;CIGAR=1X;DP=5361;DPB=5361;DPRA=1.20492;EPP=3173.45;EPPR=8309.27;GTI=1;LEN=1;MEANALT=1.13725;MQM=59.8882;MQMR=59.9928;NS=94;NUMALT=1;ODDS=3.2913;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52527;QR=136982;RO=3877;RPL=1472;RPP=3173.45;RPPR=8309.27;RPR=4;RUN=1;SAF=0;SAP=3208.1;SAR=1476;SRF=0;SRP=8421.81;SRR=3877;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1365:0:0:0,-11.7402,-123.146	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.976	0/1:68:37,31:37:1294:31:1090:-77.9377,0,-96.2895	0/0:119:118,1:118:4181:1:36:0,-32.2243,-372.876	0/1:35:16,18:16:568:18:644:-47.6959,0,-40.8573	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	0/1:64:29,34:29:1015:34:1216:-90.4219,0,-72.3365	0/1:72:37,35:37:1316:35:1231:-89.1602,0,-97.0676	0/1:89:53,35:53:1892:35:1247:-85.8391,0,-143.865	0/1:74:38,36:38:1313:36:1258:-91.2446,0,-96.1908	0/1:41:15,26:15:540:26:916:-70.4142,0,-36.5943	0/0:85:85,0:85:3006:0:0:0,-25.5875,-270.773	0/1:95:46,49:46:1618:49:1739:-128.196,0,-117.31	0/1:54:25,28:25:879:28:1008:-74.8666,0,-63.2568	0/0:69:69,0:69:2417:0:0:0,-20.7711,-217.786	0/1:56:27,29:27:968:29:1036:-76.6962,0,-70.5797	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/1:47:27,20:27:960:20:700:-49.1732,0,-72.5679	0/0:26:26,0:26:897:0:0:0,-7.82678,-81.0414	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.414	0/1:114:42,72:42:1460:72:2554:-195.764,0,-97.374	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/1:81:43,38:43:1532:38:1364:-98.6773,0,-113.79	0/1:29:15,14:15:532:14:496:-36.2425,0,-39.4832	0/0:45:45,0:45:1579:0:0:0,-13.5463,-142.4	0/0:133:133,0:133:4714:0:0:0,-40.037,-424.424	0/1:94:31,63:31:1100:63:2260:-175.365,0,-71.0135	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/1:127:33,94:33:1176:94:3346:-263.126,0,-67.917	0/1:78:34,44:34:1182:44:1580:-119.011,0,-83.2027	0/0:74:74,0:74:2595:0:0:0,-22.2762,-233.798	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:146:54,92:54:1907:92:3275:-251.02,0,-127.957	0/1:46:18,28:18:635:28:992:-75.747,0,-43.6296	0/0:38:38,0:38:1326:0:0:0,-11.4391,-119.638	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:78:76,1:76:2699:1:36:0,-19.8659,-239.63	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9546	0/1:64:42,22:42:1479:22:788:-51.9789,0,-114.138	0/1:55:23,32:23:807:32:1135:-85.8992,0,-56.3925	0/1:52:22,30:22:788:30:1067:-80.6877,0,-55.5912	0/1:62:23,39:23:815:39:1400:-107.635,0,-55.0069	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.367	0/0:97:97,0:97:3455:0:0:0,-29.1999,-311.163	0/0:35:35,0:35:1231:0:0:0,-10.536,-111.093	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:48:48,0:48:1700:0:0:0,-14.4494,-153.286	0/1:33:8,25:8:288:25:885:-70.0325,0,-16.3334	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:78:38,40:38:1328:40:1427:-105.246,0,-96.3363	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:48:48,0:48:1693:0:0:0,-14.4494,-152.654	0/1:75:36,38:36:1267:38:1351:-99.099,0,-91.8127	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:103:102,1:102:3622:1:36:0,-27.4078,-322.588	0/0:89:86,3:86:3046:3:108:0,-16.7165,-264.296	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.149	0/0:42:42,0:42:1488:0:0:0,-12.6433,-134.215	0/0:116:114,1:114:4067:1:36:0,-31.38,-362.619	0/0:93:93,0:93:3268:0:0:0,-27.9958,-294.343	0/0:35:35,0:35:1236:0:0:0,-10.536,-111.544	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:29:29,0:29:1005:0:0:0,-8.72987,-90.7583	0/1:25:14,11:14:495:11:377:-26.7327,0,-37.3573	0/0:39:39,0:39:1369:0:0:0,-11.7402,-123.506	0/1:67:36,31:36:1270:31:1112:-80.2223,0,-94.4323	0/1:126:53,73:53:1876:73:2595:-195.74,0,-131.189	0/1:71:42,29:42:1492:29:1032:-71.8114,0,-113.201	0/0:72:72,0:72:2551:0:0:0,-21.6742,-229.841	0/0:70:70,0:70:2479:0:0:0,-21.0721,-223.364	0/1:12:7,5:7:244:5:172:-12.2056,0,-18.6871	0/0:65:65,0:65:2308:0:0:0,-19.5669,-207.981	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.986	0/1:191:74,117:74:2610:117:4176:-318.527,0,-177.652	0/0:49:49,0:49:1723:0:0:0,-14.7505,-155.354	0/0:50:49,0:49:1748:0:0:0,-14.7505,-157.391	0/1:55:27,28:27:959:28:1008:-74.4797,0,-70.0687	0/0:112:112,0:112:3916:0:0:0,-33.7154,-352.64	0/1:22:9,13:9:324:13:459:-35.0214,0,-22.8832	0/0:60:60,0:60:2094:0:0:0,-18.0618,-188.723	0/1:63:34,29:34:1212:29:1036:-74.589,0,-90.4214	0/0:41:41,0:41:1415:0:0:0,-12.3422,-127.642	0/1:57:31,26:31:1086:26:910:-65.0554,0,-80.8888	0/1:61:17,44:17:587:44:1569:-123.138,0,-34.791	0/0:86:86,0:86:3038:0:0:0,-25.8886,-273.652	0/0:114:114,0:114:4047:0:0:0,-34.3174,-364.42
chr06	773683	.	C	T	25895.5	PASS	AB=0.553471;ABP=69.1934;AC=49;AF=0.260638;AN=188;AO=1494;CIGAR=1X;DP=5434;DPB=5434;DPRA=1.19949;EPP=3229.84;EPPR=8556.44;GTI=2;LEN=1;MEANALT=1.01961;MQM=59.8896;MQMR=59.9914;NS=94;NUMALT=1;ODDS=3.22391;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53416;QR=140534;RO=3939;RPL=1492;RPP=3229.84;RPPR=8547.76;RPR=2;RUN=1;SAF=0;SAP=3247.19;SAR=1494;SRF=1;SRP=8547.76;SRR=3938;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/1:68:38,30:38:1364:30:1072:-76.322,0,-102.591	0/0:124:123,1:123:4392:1:36:0,-33.7294,-391.856	0/1:35:16,19:16:576:19:680:-50.9931,0,-41.6389	0/1:20:11,9:11:392:9:309:-22.1201,0,-29.5995	0/1:64:30,34:30:1080:34:1220:-90.8409,0,-78.2473	0/1:69:35,34:35:1252:34:1220:-88.6501,0,-92.214	0/1:85:50,35:50:1781:35:1245:-86.7652,0,-134.983	0/1:75:38,37:38:1364:37:1318:-96.3444,0,-100.483	0/1:40:14,26:14:504:26:925:-71.5255,0,-33.6569	0/0:85:85,0:85:3018:0:0:0,-25.5875,-271.849	0/1:98:47,51:47:1680:51:1828:-135.3,0,-121.986	0/1:54:25,29:25:888:29:1040:-77.6587,0,-63.9834	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/1:56:27,29:27:972:29:1040:-77.0567,0,-70.9402	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:46:26,20:26:936:20:715:-50.8218,0,-70.7121	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/1:116:45,71:45:1616:71:2544:-194.263,0,-110.811	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.904	0/1:83:44,39:44:1561:39:1400:-101.314,0,-115.794	0/1:29:15,14:15:540:14:504:-36.9636,0,-40.2067	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:137:137,0:137:4881:0:0:0,-41.2411,-439.443	0/1:94:30,64:30:1076:64:2266:-175.903,0,-68.856	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:132:34,98:34:1220:98:3471:-272.863,0,-70.3708	0/1:80:34,46:34:1190:46:1652:-124.886,0,-83.3186	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:145:54,91:54:1917:91:3261:-250.059,0,-129.156	0/1:48:19,29:19:676:29:1040:-79.4649,0,-46.7186	0/0:39:39,0:39:1389:0:0:0,-11.7402,-125.307	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:76:75,1:75:2677:1:32:0,-19.679,-237.974	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:64:42,22:42:1489:22:792:-52.3398,0,-115.037	0/1:58:24,34:24:841:34:1216:-92.2692,0,-58.5466	0/1:55:24,31:24:864:31:1108:-83.4743,0,-61.5259	0/1:63:22,41:22:788:41:1476:-114.171,0,-52.2799	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:49:49,0:49:1726:0:0:0,-14.7505,-155.621	0/1:35:8,27:8:284:27:964:-76.5408,0,-15.3673	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:79:38,41:38:1364:41:1472:-108.995,0,-99.2793	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:5:1,4:1:21:4:144:-11.8085,0,-0.594796	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:71:34,37:34:1194:37:1328:-98.4491,0,-86.3881	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:107:105,1:105:3760:1:36:0,-28.5958,-335.075	0/0:88:86,2:86:3084:2:72:0,-19.6539,-270.951	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.346	0/0:41:41,0:41:1441:0:0:0,-12.3422,-129.984	0/0:118:117,1:117:4200:1:36:0,-31.9233,-374.582	0/0:94:94,0:94:3349:0:0:0,-28.2968,-301.626	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.108	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	0/0:44:44,0:44:1519:0:0:0,-13.2453,-136.996	0/1:70:39,31:39:1392:31:1112:-79.3192,0,-104.507	0/1:130:57,73:57:1983:73:2622:-196.959,0,-139.605	0/1:72:42,30:42:1504:30:1072:-75.0809,0,-113.98	0/0:74:74,0:74:2645:0:0:0,-22.2762,-238.295	0/0:67:67,0:67:2381:0:0:0,-20.169,-214.546	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:196:78,118:78:2776:118:4210:-320.078,0,-191.08	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/1:56:28,28:28:1004:28:1008:-74.0923,0,-73.8182	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.269	0/1:22:9,13:9:324:13:464:-35.4748,0,-22.8832	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.972	0/1:62:33,29:33:1184:29:1044:-75.6109,0,-88.2045	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/1:59:32,27:32:1148:27:958:-68.7743,0,-85.8691	0/1:62:17,45:17:600:45:1596:-125.265,0,-35.6653	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:116:116,0:116:4137:0:0:0,-34.9195,-372.513
chr06	860268	.	T	G	25045.1	PASS	AB=0.439487;ABP=117.068;AC=45;AF=0.239362;AN=188;AO=1585;CIGAR=1X;DP=8050;DPB=8050;DPRA=1.00821;EPP=3444.79;EPPR=14035.1;GTI=3;LEN=1;MEANALT=1.03774;MQM=59.8946;MQMR=59.9675;NS=94;NUMALT=1;ODDS=3.70703;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56680;QR=231659;RO=6462;RPL=0;RPP=3444.79;RPPR=14035.1;RPR=1585;RUN=1;SAF=1585;SAP=3444.79;SAR=0;SRF=6462;SRP=14035.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.714	0/0:54:53,0:53:1889:0:0:0,-15.9546,-169.927	0/1:127:66,61:66:2356:61:2191:-158.797,0,-174.068	0/0:169:167,1:167:5992:1:36:0,-47.3346,-535.772	0/1:62:39,23:39:1396:23:824:-55.8195,0,-107.275	0/1:52:35,17:35:1260:17:608:-39.3985,0,-98.0519	0/1:85:45,40:45:1616:40:1440:-104.31,0,-120.142	0/1:122:85,37:85:3031:37:1332:-83.3704,0,-236.295	0/1:93:55,38:55:1946:38:1368:-95.425,0,-147.416	0/1:73:48,25:48:1709:25:896:-58.9852,0,-132.119	0/1:59:28,31:28:1008:31:1112:-82.6302,0,-73.2756	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/1:70:39,31:39:1404:31:1112:-79.2631,0,-105.587	0/1:51:23,28:23:828:28:1008:-75.5539,0,-59.4916	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.161	0/1:45:25,20:25:900:20:719:-51.4922,0,-67.7747	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:142:142,0:142:5100:0:0:0,-42.7463,-459.139	0/1:76:36,40:36:1281:40:1426:-105.758,0,-92.713	0/0:116:116,0:116:4145:0:0:0,-34.9195,-373.231	0/1:92:50,42:50:1792:42:1504:-107.955,0,-133.781	0/1:45:31,14:31:1112:14:504:-32.1517,0,-86.845	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/0:272:272,0:272:9756:0:0:0,-81.8802,-877.984	0/1:263:154,109:154:5517:109:3911:-272.954,0,-417.482	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:163:90,73:90:3236:73:2575:-182.872,0,-242.393	0/1:114:71,43:71:2556:43:1544:-104.936,0,-195.972	0/0:108:107,1:107:3829:1:36:0,-28.913,-341.207	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:150:86,64:86:3077:64:2270:-159.405,0,-232.002	0/1:158:93,65:93:3329:65:2340:-163.251,0,-252.263	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:82:80,2:80:2842:2:72:0,-17.8477,-249.179	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:98:46,52:46:1641:52:1851:-137.367,0,-118.476	0/1:42:25,17:25:900:17:612:-42.7702,0,-68.6778	0/1:52:25,27:25:896:27:972:-72.1443,0,-65.3068	0/1:152:88,64:88:3145:64:2262:-158.083,0,-237.517	0/0:107:106,1:106:3792:1:36:0,-28.6119,-337.878	0/0:164:164,0:164:5843:0:0:0,-49.3689,-525.351	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/1:84:50,34:50:1800:34:1201:-83.1071,0,-136.996	0/1:126:57,69:57:2044:69:2480:-185.522,0,-146.302	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8899	0/0:113:113,0:113:4064:0:0:0,-34.0164,-365.945	0/1:81:40,41:40:1436:41:1464:-107.673,0,-105.154	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/1:80:64,16:64:2304:16:576:-28.0926,0,-183.538	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/0:111:111,0:111:3965:0:0:0,-33.4143,-357.04	0/0:106:105,1:105:3761:1:36:0,-28.3109,-335.089	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:151:151,0:151:5424:0:0:0,-45.4555,-488.287	0/0:179:179,0:179:6428:0:0:0,-53.8844,-578.453	0/0:86:86,0:86:3081:0:0:0,-25.8886,-277.516	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:141:141,0:141:5041:0:0:0,-42.4452,-453.834	0/0:165:164,1:164:5866:1:36:0,-46.0717,-524.449	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:13:11,2:11:388:2:72:-2.92333,0,-31.344	0/0:212:212,0:212:7612:0:0:0,-63.8184,-685.114	0/1:71:32,39:32:1129:39:1400:-104.926,0,-80.5432	0/1:127:70,57:70:2497:57:2018:-143.659,0,-186.75	0/1:159:92,66:92:3304:66:2376:-166.175,0,-249.653	0/0:125:125,0:125:4473:0:0:0,-37.6287,-402.73	0/0:87:86,1:86:3096:1:36:0,-22.5913,-275.268	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/0:94:94,0:94:3361:0:0:0,-28.2968,-302.649	0/0:145:144,1:144:5180:1:36:0,-40.0511,-462.739	0/1:175:100,75:100:3592:75:2644:-185.521,0,-269.786	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.607	0/1:31:16,15:16:576:15:536:-39.2429,0,-42.8431	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/1:22:7,15:7:252:15:540:-42.3139,0,-16.4063	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:55:32,23:32:1148:23:824:-57.9267,0,-87.0732	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.928	0/1:133:71,62:71:2556:62:2224:-160.384,0,-190.253	0/1:61:21,40:21:756:40:1436:-111.175,0,-50.0044	0/0:151:151,0:151:5428:0:0:0,-45.4555,-488.61	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315
chr06	891974	.	C	T	186846	PASS	AB=0.511666;ABP=8.12723;AC=144;AF=0.765957;AN=188;AO=7121;CIGAR=1X;DP=9267;DPB=9267;DPRA=0;EPP=15466.1;EPPR=4647.79;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9093;MQMR=59.9687;NS=94;NUMALT=1;ODDS=1.47215;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=252393;QR=75300;RO=2139;RPL=2217;RPP=2204.66;RPPR=841.835;RPR=4904;RUN=1;SAF=2217;SAP=2204.66;SAR=4904;SRF=615;SRP=841.835;SRR=1524;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:60:1,59:1:36:59:2104:-186.031,-14.4635,0	1/1:66:0,66:0:0:66:2321:-209.149,-19.868,0	0/1:136:68,68:68:2398:68:2431:-178.106,0,-175.137	1/1:188:0,188:0:0:188:6652:-598.757,-56.5936,0	0/1:49:23,26:23:790:26:912:-67.6426,0,-56.6632	0/1:40:18,22:18:636:22:788:-59.2036,0,-45.5268	1/1:116:0,116:0:0:116:4115:-370.531,-34.9195,0	0/1:120:49,71:49:1752:71:2519:-190.833,0,-121.841	0/1:87:36,51:36:1266:51:1799:-136.002,0,-88.0515	0/1:99:35,64:35:1224:64:2266:-174.392,0,-80.6589	0/1:90:39,51:39:1374:51:1801:-135.277,0,-96.8644	1/1:121:0,121:0:0:121:4321:-389.066,-36.4246,0	0/1:110:57,53:57:2040:53:1872:-135.621,0,-150.759	0/1:164:76,88:76:2666:88:3108:-230.575,0,-190.816	1/1:99:1,98:1:36:98:3495:-311.159,-26.2037,0	0/1:82:38,44:38:1335:44:1563:-116.276,0,-95.7647	1/1:104:0,104:0:0:104:3656:-329.247,-31.3071,0	0/1:83:43,40:43:1521:40:1392:-100.589,0,-112.196	1/1:82:1,81:1:36:81:2847:-252.866,-21.0862,0	1/1:122:0,122:0:0:122:4318:-388.78,-36.7257,0	0/1:159:73,86:73:2584:86:3061:-227.855,0,-184.944	1/1:95:0,95:0:0:95:3360:-302.618,-28.5979,0	0/1:122:54,68:54:1904:68:2401:-179.615,0,-134.909	0/1:71:27,44:27:959:44:1552:-118.597,0,-65.2523	1/1:66:0,66:0:0:66:2350:-211.758,-19.868,0	1/1:234:0,234:0:0:234:8294:-746.47,-70.441,0	0/1:173:78,95:78:2749:95:3379:-252.249,0,-195.572	1/1:49:0,49:0:0:49:1729:-155.893,-14.7505,0	0/1:177:83,94:83:2902:94:3306:-244.476,0,-208.078	0/1:107:48,59:48:1699:59:2086:-155.798,0,-120.985	1/1:132:4,128:4:144:128:4564:-397.611,-26.4223,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	0/1:286:137,149:137:4786:149:5272:-386.797,0,-344.809	0/1:100:40,58:40:1423:58:2059:-155.719,0,-98.5061	1/1:85:0,85:0:0:85:3032:-273.111,-25.5876,0	0/1:3:2,1:2:72:1:27:-1.79669,0,-5.93363	1/1:127:4,122:4:140:122:4313:-375.398,-25.343,0	1/1:61:0,61:0:0:61:2151:-193.855,-18.3628,0	0/1:154:71,83:71:2530:83:2945:-218.853,0,-181.592	0/1:111:53,58:53:1822:58:2040:-150.457,0,-130.84	0/1:102:51,51:51:1768:51:1828:-134.096,0,-128.202	0/1:90:41,49:41:1441:49:1720:-127.99,0,-102.891	1/1:64:1,63:1:36:63:2244:-198.626,-15.6676,0	1/1:147:0,146:0:0:146:5177:-465.713,-43.9504,0	1/1:95:1,94:1:32:94:3271:-291.407,-25.3985,0	0/1:117:62,55:62:2195:55:1959:-141.364,0,-162.592	0/1:140:86,54:86:3051:54:1876:-126.966,0,-232.588	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:105:0,105:0:0:105:3741:-336.89,-31.6082,0	0/1:48:21,27:21:743:27:972:-73.3485,0,-52.7439	1/1:10:0,10:0:0:10:356:-32.3803,-3.0103,0	0/1:104:63,41:63:2212:41:1461:-100.479,0,-168.036	1/1:69:0,69:0:0:69:2470:-222.549,-20.7711,0	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:18:11,7:11:381:7:243:-16.7889,0,-29.2021	1/1:95:1,94:1:36:94:3343:-297.454,-24.9996,0	1/1:148:6,142:6:212:142:5059:-436.019,-25.1276,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:173:0,173:0:0:173:6123:-551.169,-52.0782,0	1/1:152:2,150:2:72:150:5318:-471.797,-38.9198,0	1/1:75:0,75:0:0:75:2676:-241.083,-22.5773,0	1/1:87:0,87:0:0:87:3075:-276.978,-26.1896,0	1/1:90:1,89:1:36:89:3147:-279.801,-23.4944,0	1/1:76:0,76:0:0:76:2710:-244.143,-22.8783,0	1/1:73:0,73:0:0:73:2593:-233.618,-21.9752,0	1/1:61:0,60:0:0:60:2127:-191.338,-18.0618,0	1/1:109:0,109:0:0:109:3879:-349.303,-32.8123,0	0/1:20:9,11:9:305:11:387:-29.1453,0,-21.7566	1/1:142:0,142:0:0:142:5053:-454.758,-42.7463,0	0/1:85:43,42:43:1493:42:1478:-107.724,0,-109.071	0/1:201:115,86:115:4071:86:3074:-216.379,0,-306.071	0/1:174:98,76:98:3455:76:2682:-189.214,0,-258.785	1/1:161:0,160:0:0:160:5700:-512.701,-48.1648,0	1/1:70:1,69:1:36:69:2476:-219.495,-17.4738,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:101:0,101:0:0:101:3609:-325.005,-30.404,0	0/1:154:65,89:65:2280:89:3160:-238.266,0,-159.102	1/1:136:0,136:0:0:136:4803:-432.43,-40.9401,0	1/1:113:0,113:0:0:113:3998:-360.011,-34.0164,0	0/1:115:55,60:55:1951:60:2135:-157.798,0,-141.247	1/1:210:1,208:1:36:208:7314:-654.724,-59.6019,0	0/1:53:23,30:23:812:30:1048:-78.6426,0,-57.4463	1/1:113:1,112:1:27:112:3955:-353.444,-31.3166,0	0/1:100:51,49:51:1798:49:1744:-127.14,0,-131.998	1/1:114:1,113:1:32:113:3987:-355.823,-31.1181,0	0/1:137:69,68:69:2464:68:2414:-176.275,0,-180.773	0/1:126:92,34:92:3181:34:1207:-70.9948,0,-248.586	1/1:99:0,99:0:0:99:3494:-314.669,-29.802,0	1/1:151:0,151:0:0:151:5361:-482.458,-45.4555,0
chr06	926994	.	CAAAAAAAGTC	CAAAAATAGTC	14938.7	PASS	AB=0.55364;ABP=42.1467;AC=45;AF=0.247253;AN=182;AO=881;CIGAR=6M1X4M;DP=3388;DPB=3387.09;DPRA=1.05717;EPP=1916.08;EPPR=5349.18;GTI=1;LEN=1;MEANALT=1.43137;MQM=60;MQMR=59.9992;NS=91;NUMALT=1;ODDS=2.96303;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31491;QR=86273;RO=2462;RPL=0;RPP=1916.08;RPPR=5349.18;RPR=881;RUN=1;SAF=0;SAP=1916.08;SAR=881;SRF=0;SRP=5349.18;SRR=2462;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7712	0/0:25:23,0:23:779:0:0:0,-6.92369,-70.0654	0/1:81:30,51:30:1042:51:1824:-140.058,0,-69.7043	0/0:64:62,2:62:2146:2:72:0,-12.4292,-186.571	0/1:16:2,14:2:71:14:504:-40.8816,0,-1.92558	0/1:34:10,24:10:351:24:856:-67.1261,0,-21.6927	0/0:54:53,0:53:1853:0:0:0,-15.9546,-166.691	0/1:52:20,31:20:685:31:1108:-84.3574,0,-46.295	0/1:41:25,16:25:878:16:568:-39.1096,0,-66.9959	0/1:76:30,46:30:1048:46:1648:-125.73,0,-71.7513	0/1:10:6,4:6:209:4:144:-10.3033,0,-16.1404	0/0:28:27,0:27:951:0:0:0,-8.12781,-85.5456	0/1:29:13,16:13:445:16:576:-43.4451,0,-31.6463	0/1:18:12,6:12:431:6:212:-14.0063,0,-33.7121	0/0:20:20,0:20:709:0:0:0,-6.0206,-64.1362	0/1:18:12,6:12:414:6:212:-14.0063,0,-32.1705	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7611	0/1:11:6,5:6:211:5:180:-13.2407,0,-16.0221	0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6078	0/0:91:91,0:91:3204:0:0:0,-27.3937,-288.589	0/1:80:38,41:38:1341:41:1472:-108.762,0,-96.9768	0/0:46:45,0:45:1571:0:0:0,-13.5463,-141.32	0/1:19:6,13:6:212:13:468:-36.7401,0,-13.7055	0/1:20:11,9:11:391:9:320:-23.1218,0,-29.5089	0/0:21:21,0:21:722:0:0:0,-6.32163,-65.2983	0/0:96:95,0:95:3333:0:0:0,-28.5978,-299.833	0/1:27:17,10:17:598:10:360:-24.6165,0,-46.0208	0/0:7:7,0:7:250:0:0:0,-2.10721,-22.8467	0/1:95:38,54:38:1335:54:1932:-146.115,0,-92.4085	0/1:78:30,47:30:1048:47:1688:-128.815,0,-71.2366	0/0:40:39,1:39:1372:1:36:0,-8.44292,-120.181	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:6:6,0:6:210:0:0:0,-1.80618,-19.242	0/1:5:1,4:1:34:4:144:-11.8085,0,-1.89376	.:.:.:.:.:.:.:.	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70297	0/1:46:24,21:24:844:21:756:-54.461,0,-62.3733	0/1:45:17,27:17:583:27:956:-72.7508,0,-39.1888	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	.:.:.:.:.:.:.:.	0/0:88:86,1:86:3026:1:36:0,-22.9512,-268.975	0/0:19:17,0:17:598:0:0:0,-5.11751,-53.8035	0/1:56:21,35:21:728:35:1244:-95.407,0,-48.9819	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:16:8,8:8:281:8:275:-20.267,0,-20.8138	0/1:50:22,28:22:764:28:992:-74.5429,0,-54.0273	0/0:34:33,1:33:1141:1:36:0,-6.63674,-99.3971	0/0:56:56,0:56:1973:0:0:0,-16.8577,-177.845	0/0:39:38,0:38:1338:0:0:0,-11.4391,-120.361	0/1:59:28,28:28:981:28:1004:-73.4585,0,-71.3853	0/1:79:21,58:21:735:58:2071:-162.879,0,-42.6905	0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1292	0/0:41:41,0:41:1440:0:0:0,-12.3422,-129.896	0/1:23:6,15:6:209:15:540:-42.2551,0,-12.4723	0/1:4:1,3:1:34:3:108:-8.87105,0,-2.19479	0/1:67:37,30:37:1308:30:1068:-76.2631,0,-97.8531	.:.:.:.:.:.:.:.	1/1:7:0,6:0:0:6:212:-19.0659,-1.80618,0	0/1:5:3,2:3:107:2:72:-5.33157,0,-8.47702	0/0:18:17,0:17:594:0:0:0,-5.11751,-53.4284	0/0:36:35,0:35:1233:0:0:0,-10.536,-110.914	0/1:4:3,1:3:103:1:36:-2.39415,0,-8.40578	0/0:157:156,0:156:5499:0:0:0,-46.9607,-494.69	0/0:63:61,0:61:2126:0:0:0,-18.3628,-191.25	0/0:13:13,0:13:462:0:0:0,-3.91339,-41.9167	0/0:22:22,0:22:782:0:0:0,-6.62266,-70.7042	0/0:53:52,1:52:1813:1:36:0,-12.3563,-159.852	0/0:69:69,0:69:2397:0:0:0,-20.7711,-215.989	0/0:10:10,0:10:350:0:0:0,-3.0103,-31.8368	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2186	0/0:14:13,0:13:466:0:0:0,-3.91339,-41.919	0/1:15:8,7:8:281:7:252:-18.5135,0,-21.1151	0/0:37:37,0:37:1314:0:0:0,-11.1381,-118.563	0/1:43:25,16:25:884:16:572:-39.1471,0,-67.2143	0/1:53:22,30:22:775:30:1076:-81.1781,0,-54.0974	0/1:76:36,39:36:1281:39:1400:-103.362,0,-92.657	0/0:43:43,0:43:1499:0:0:0,-12.9443,-135.203	0/0:70:69,0:69:2416:0:0:0,-20.7711,-217.379	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/0:66:65,0:65:2296:0:0:0,-19.5669,-206.542	0/0:66:63,1:63:2192:1:36:0,-16.0275,-193.95	0/1:91:37,53:37:1280:53:1908:-144.545,0,-88.0469	0/0:42:41,0:41:1435:0:0:0,-12.3422,-129.086	0/0:13:12,0:12:418:0:0:0,-3.61236,-37.5939	0/1:13:9,3:9:321:3:108:-6.22286,0,-25.4055	0/0:27:26,1:26:903:1:36:0,-4.52953,-77.9864	0/1:17:4,13:4:139:13:468:-37.3421,0,-7.73489	0/0:17:17,0:17:594:0:0:0,-5.11751,-53.7871	0/1:26:11,15:11:375:15:536:-40.748,0,-26.2512	0/0:7:7,0:7:251:0:0:0,-2.10721,-22.9379	0/1:23:13,9:13:457:9:308:-21.161,0,-34.5748	0/1:15:4,10:4:142:10:345:-26.8079,0,-8.55602	0/0:107:106,0:106:3712:0:0:0,-31.9092,-333.929	0/0:25:25,0:25:869:0:0:0,-7.52575,-78.5252
chr06	927039	.	G	A	78138.6	PASS	AB=0.431477;ABP=87.2287;AC=131;AF=0.696809;AN=188;AO=3118;CIGAR=1X;DP=5916;DPB=5916;DPRA=0.49991;EPP=6773.66;EPPR=6057.08;GTI=12;LEN=1;MEANALT=1.08791;MQM=59.9718;MQMR=59.9932;NS=94;NUMALT=1;ODDS=1.14345;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111621;QR=99577;RO=2788;RPL=708;RPP=2020.43;RPPR=6057.08;RPR=2410;RUN=1;SAF=2410;SAP=2020.43;SAR=708;SRF=2788;SRP=6057.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:40:0,40:0:0:40:1416:-127.737,-12.0412,0	0/1:93:60,33:60:2141:33:1173:-77.8798,0,-164.96	1/1:104:0,104:0:0:104:3735:-336.35,-31.3071,0	0/1:20:10,10:10:356:10:356:-26.3606,0,-26.3606	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	1/1:56:0,56:0:0:56:2008:-180.991,-16.8577,0	0/1:62:43,19:43:1544:19:680:-42.8653,0,-120.589	0/1:58:28,30:28:996:30:1066:-78.7919,0,-72.4951	0/1:51:10,41:10:360:41:1451:-115.487,0,-17.3918	0/0:48:44,4:44:1576:4:144:0,-1.13582,-128.818	1/1:27:0,27:0:0:27:957:-86.4439,-8.12781,0	0/1:27:10,17:10:352:17:612:-47.2856,0,-23.8904	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	0/1:17:10,6:10:360:6:216:-14.6142,0,-27.568	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:91:0,91:0:0:91:3256:-293.256,-27.3937,0	0/1:74:29,45:29:1040:45:1608:-122.734,0,-71.6381	1/1:50:0,50:0:0:50:1781:-160.571,-15.0515,0	0/1:63:50,13:50:1777:13:464:-23.1326,0,-141.246	0/1:32:11,21:11:377:21:756:-58.7343,0,-24.625	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:131:0,131:0:0:131:4704:-423.518,-39.4349,0	0/1:155:88,67:88:3145:67:2404:-169.957,0,-236.614	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:124:64,60:64:2277:60:2140:-155.54,0,-167.863	0/1:62:35,27:35:1241:27:968:-68.7735,0,-93.3286	1/1:54:4,50:4:140:50:1788:-148.258,-3.31104,0	0/0:216:216,0:216:7729:0:0:0,-65.0225,-695.641	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:290:289,1:289:10342:1:36:0,-83.7004,-927.101	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:43:15,25:15:540:25:900:-68.92,0,-36.5355	0/1:67:28,39:28:1004:39:1400:-106.13,0,-70.5069	1/1:6:0,5:0:0:5:180:-16.1922,-1.50515,0	0/0:72:69,2:69:2468:2:72:0,-14.8962,-215.537	1/1:80:2,78:2:72:78:2796:-245.043,-17.2457,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:80:46,34:46:1648:34:1220:-86.0244,0,-124.526	0/1:16:6,10:6:212:10:351:-27.1102,0,-14.6083	0/1:15:5,10:5:165:10:356:-27.8658,0,-10.6582	0/1:64:30,34:30:1072:34:1220:-90.8409,0,-77.5265	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:81:0,81:0:0:81:2893:-260.605,-24.3834,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:50:22,28:22:788:28:1008:-75.9849,0,-56.1933	0/1:84:45,39:45:1597:39:1400:-101.013,0,-118.732	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/1:32:20,12:20:716:12:428:-29.2258,0,-55.1348	0/0:123:119,4:119:4189:4:144:0,-23.7131,-363.876	0/1:66:37,29:37:1312:29:1044:-74.4068,0,-98.5137	1/1:25:0,25:0:0:25:900:-81.3187,-7.52575,0	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:265:260,4:260:9286:4:144:0,-66.5181,-822.393	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	0/0:152:150,2:150:5373:2:68:0,-39.2988,-477.242	1/1:161:0,161:0:0:161:5776:-519.953,-48.4658,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:68:1,67:1:36:67:2400:-212.659,-16.8718,0	1/1:65:0,64:0:0:64:2304:-207.261,-19.2659,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	0/1:136:120,16:120:4277:16:576:-11.2349,0,-344.168	1/1:71:0,71:0:0:71:2544:-229.203,-21.3731,0	0/1:30:19,11:19:669:11:392:-26.5892,0,-51.4992	0/1:65:41,24:41:1472:24:864:-58.5156,0,-113.209	0/1:89:54,35:54:1925:35:1252:-86.1934,0,-146.733	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	1/1:58:1,57:1:36:57:2044:-180.634,-13.8615,0	0/0:313:311,2:311:11119:2:72:0,-87.3857,-993.76	1/1:61:0,61:0:0:61:2173:-195.835,-18.3628,0	1/1:47:1,46:1:36:46:1633:-143.659,-10.5501,0	0/1:146:62,84:62:2220:84:3024:-228.439,0,-156.114	1/1:51:0,50:0:0:50:1800:-161.922,-15.0515,0	1/1:20:0,20:0:0:20:720:-65.1242,-6.0206,0	0/1:18:7,11:7:252:11:381:-29.2021,0,-17.6104	1/1:31:1,29:1:36:29:1040:-90.3161,-5.79245,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	0/1:28:15,13:15:536:13:453:-32.6109,0,-40.146	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:130:112,18:112:4012:18:648:-19.518,0,-322.135	0/1:20:15,5:15:536:5:180:-10.5315,0,-42.5542	1/1:133:0,133:0:0:133:4780:-430.355,-40.037,0	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0
chr06	935239	.	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chr06	945685	.	T	G	141234	PASS	AB=0.421022;ABP=285.981;AC=141;AF=0.75;AN=188;AO=7527;CIGAR=1X;DP=10573;DPB=10573;DPRA=0;EPP=16347.7;EPPR=6591.27;GTI=2;LEN=1;MEANALT=1.04255;MQM=37.8966;MQMR=50.9464;NS=94;NUMALT=1;ODDS=0.0510172;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268432;QR=109181;RO=3042;RPL=7527;RPP=16347.7;RPPR=6591.27;RPR=0;RUN=1;SAF=0;SAP=16347.7;SAR=7527;SRF=0;SRP=6608.63;SRR=3042;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1620:-140.402,-13.5464,0	1/1:194:0,194:0:0:194:6886:-598.083,-58.3998,0	0/1:126:72,54:72:2584:54:1936:-130.878,0,-194.335	1/1:263:0,263:0:0:263:9407:-786.72,-79.1709,0	0/1:79:45,34:45:1616:34:1216:-78.5272,0,-121.266	0/1:65:35,30:35:1252:30:1076:-74.5145,0,-93.1304	1/1:120:0,119:0:0:119:4235:-353.764,-35.8226,0	0/1:259:143,116:143:5128:116:4140:-282.221,0,-383.092	0/1:160:106,54:106:3812:54:1923:-119.424,0,-294.556	0/1:221:97,124:97:3480:124:4444:-306.312,0,-245.169	0/1:20:11,9:11:396:9:324:-21.4178,0,-29.5977	1/1:76:2,74:2:72:74:2635:-223.206,-16.0465,0	0/1:76:40,36:40:1440:36:1279:-89.243,0,-106.822	0/1:52:28,24:28:1008:24:856:-56.8024,0,-75.0928	1/1:63:0,63:0:0:63:2260:-189.256,-18.9649,0	0/1:57:32,25:32:1152:25:888:-57.7444,0,-85.8432	1/1:49:0,49:0:0:49:1760:-153.55,-14.7505,0	0/1:66:39,27:39:1404:27:972:-65.061,0,-106.387	1/1:33:0,33:0:0:33:1180:-102.559,-9.93399,0	1/1:200:0,200:0:0:200:7173:-598.322,-60.206,0	0/1:185:112,73:112:4024:73:2600:-162.393,0,-304.48	1/1:144:0,144:0:0:144:5109:-422.797,-43.3483,0	0/1:82:49,33:49:1745:33:1168:-73.8323,0,-130.725	0/1:209:126,83:126:4517:83:2959:-187.31,0,-341.831	1/1:91:0,91:0:0:91:3248:-272.058,-27.3937,0	1/1:532:3,528:3:108:528:18866:-1542.71,-151.024,0	0/1:237:142,95:142:5092:95:3378:-211.741,0,-384.713	1/1:43:0,43:0:0:43:1536:-129.582,-12.9443,0	0/1:353:181,172:181:6481:172:6122:-399.354,0,-472.349	0/1:104:64,40:64:2300:40:1424:-87.5144,0,-174.929	1/1:114:4,110:4:144:110:3931:-314.003,-21.0485,0	0/1:5:1,4:1:36:4:144:-10.8756,0,-1.841	0/1:14:4,10:4:144:10:348:-25.7404,0,-9.05557	0/1:8:6,2:6:216:2:72:-4.15084,0,-17.2626	0/1:3:1,2:1:36:2:72:-5.71023,0,-2.57761	1/1:6:0,6:0:0:6:216:-19.1438,-1.80618,0	0/1:215:121,94:121:4356:94:3359:-212.603,0,-325.017	0/1:325:217,107:217:7788:107:3811:-222.24,0,-599.391	1/1:25:0,25:0:0:25:879:-77.0569,-7.52575,0	0/1:2:1,1:1:36:1:36:-2.74409,0,-2.98442	1/1:176:4,172:4:144:172:6142:-501.603,-39.7113,0	1/1:24:0,24:0:0:24:856:-72.1314,-7.22472,0	0/1:182:126,56:126:4524:56:2000:-113.386,0,-350.543	0/1:85:49,36:49:1764:36:1292:-83.0084,0,-132.489	0/1:65:37,28:37:1328:28:1000:-64.6109,0,-99.7726	0/1:146:88,58:88:3160:58:2061:-126.129,0,-237.639	1/1:132:0,132:0:0:132:4710:-408.336,-39.736,0	1/1:209:0,209:0:0:209:7459:-622.612,-62.9153,0	1/1:170:0,170:0:0:170:6057:-507.19,-51.1751,0	0/1:193:124,69:124:4452:69:2476:-148.01,0,-340.419	0/1:248:138,110:138:4956:110:3936:-249.794,0,-367.283	1/1:5:0,5:0:0:5:176:-15.1481,-1.50515,0	1/1:150:0,150:0:0:150:5359:-466.746,-45.1545,0	0/1:35:25,10:25:900:10:356:-19.2626,0,-70.1706	0/1:20:12,8:12:428:8:288:-19.3885,0,-32.7662	0/1:135:71,64:71:2537:64:2292:-151.378,0,-187.205	1/1:45:0,45:0:0:45:1591:-133.562,-13.5464,0	0/1:3:2,1:2:72:1:32:-2.15145,0,-5.89657	0/1:30:11,19:11:396:19:676:-46.837,0,-26.5025	1/1:53:1,52:1:36:52:1864:-152.939,-12.3681,0	1/1:74:0,74:0:0:74:2633:-219.47,-22.2762,0	0/1:11:8,3:8:288:3:108:-6.05788,0,-22.8588	1/1:309:0,309:0:0:309:11027:-909.669,-93.0183,0	1/1:131:1,130:1:36:130:4626:-383.52,-35.8519,0	1/1:90:0,90:0:0:90:3212:-270.868,-27.0927,0	1/1:67:0,67:0:0:67:2392:-199.144,-20.169,0	1/1:248:0,248:0:0:248:8846:-740.783,-74.6554,0	1/1:124:0,124:0:0:124:4418:-370.507,-37.3277,0	1/1:4:0,4:0:0:4:131:-11.4786,-1.20412,0	1/1:107:0,107:0:0:107:3820:-331.067,-32.2102,0	1/1:68:0,68:0:0:68:2402:-198.397,-20.47,0	0/1:13:9,4:9:324:4:140:-7.95211,0,-25.0573	1/1:80:0,80:0:0:80:2806:-244.522,-24.0824,0	0/1:97:38,59:38:1368:59:2104:-153.7,0,-93.9267	0/1:141:63,78:63:2256:78:2758:-190.621,0,-159.091	0/1:253:151,102:151:5413:102:3636:-229.268,0,-408.411	1/1:100:3,97:3:108:97:3458:-291.777,-20.0351,0	1/1:139:1,138:1:36:138:4948:-427.409,-38.2475,0	0/1:15:7,8:7:252:8:288:-20.8936,0,-18.4969	1/1:119:0,119:0:0:119:4252:-356.962,-35.8226,0	1/1:114:0,114:0:0:114:4055:-352.959,-34.3174,0	0/1:286:187,99:187:6704:99:3527:-208.417,0,-513.749	1/1:101:0,101:0:0:101:3593:-300.047,-30.404,0	1/1:51:0,51:0:0:51:1832:-154.032,-15.3525,0	0/1:110:65,45:65:2340:45:1599:-101.77,0,-176.622	1/1:134:0,134:0:0:134:4760:-396.388,-40.338,0	0/1:42:25,17:25:892:17:601:-39.2372,0,-67.9029	1/1:70:0,70:0:0:70:2455:-213.702,-21.0721,0	0/1:66:29,36:29:1044:36:1287:-92.7149,0,-74.1899	1/1:13:0,13:0:0:13:459:-38.551,-3.91339,0	0/1:46:25,21:25:900:21:752:-49.8391,0,-66.7893	0/1:78:59,19:59:2120:19:680:-33.9862,0,-166.429	1/1:168:1,167:1:36:167:5970:-494.594,-46.9996,0	1/1:77:0,77:0:0:77:2746:-230.153,-23.1793,0
chr06	967236	.	CGGG	TGGG,CGGC	249206	PASS	AB=0.50739,0.483275;ABP=5.44951,15.5037;AC=143,43;AF=0.768817,0.231183;AN=186;AO=8819,2504;CIGAR=1X3M,3M1X;DP=11416;DPB=11416;DPRA=0,1.19459;EPP=18661.3,5310.87;EPPR=11.6962;GTI=1;LEN=1,1;MEANALT=2.34409,2.92308;MQM=59.9391,59.9461;MQMR=60;NS=93;NUMALT=2;ODDS=1.35134;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=315553,89181;QR=141;RO=4;RPL=56,15;RPP=18669.9,5310.87;RPPR=11.6962;RPR=8763,2489;RUN=1,1;SAF=8818,2504;SAP=19144.5,5440.38;SAR=1,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,46,0:0:0:46,0:1636,0:-147.313,-13.8474,0,-147.313,-13.8474,-147.313	1/1:189:0,189,0:0:0:189,0:6751,0:-607.663,-56.8947,0,-607.663,-56.8947,-607.663	1/2:136:0,67,68:0:0:67,68:2408,2436:-395.114,-198.665,-178.496,-196.447,0,-175.977	1/1:307:0,304,2:0:0:304,2:10864,72:-977.3,-91.5131,0,-971.425,-85.6383,-970.823	1/2:128:0,61,61:0:0:61,61:2188,2179:-356.048,-177.67,-159.307,-178.392,0,-160.029	1/2:49:0,17,32:0:0:17,32:612,1143:-143.438,-93.5008,-88.3833,-50.2959,0,-40.663	1/1:137:0,136,0:0:0:136,0:4851,0:-436.509,-40.9401,0,-436.509,-40.9401,-436.509	1/2:229:0,115,113:0:0:115,113:4106,4028:-663.061,-328.33,-293.711,-334.728,0,-300.712	1/2:162:0,79,83:0:0:79,83:2819,2967:-472.088,-242.277,-218.496,-230.168,0,-205.182	1/2:200:0,112,88:0:0:112,88:4011,3100:-579.827,-252.72,-219.005,-327.462,0,-300.971	1/2:45:0,20,24:0:0:20,24:720,856:-128.526,-69.7767,-63.7561,-58.7483,0,-51.5236	1/1:113:0,113,0:0:0:113,0:4009,0:-360.982,-34.0164,0,-360.982,-34.0164,-360.982	1/2:99:0,50,49:0:0:50,49:1792,1751:-289.268,-143.123,-128.071,-146.503,0,-131.752	1/2:78:0,39,38:0:0:39,38:1395,1364:-225.012,-111.262,-99.5216,-113.748,0,-102.309	1/1:81:0,79,0:0:0:79,0:2844,0:-255.893,-23.7814,0,-255.893,-23.7814,-255.893	1/2:60:0,33,26:0:0:33,26:1188,932:-173.027,-76.0893,-66.1553,-97.0124,0,-89.1856	1/1:59:0,59,0:0:0:59,0:2120,0:-191.05,-17.7608,0,-191.05,-17.7608,-191.05	1/2:82:0,43,39:0:0:43,39:1544,1389:-239.518,-113.567,-100.622,-126.309,0,-114.569	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/1:289:0,287,0:0:0:287,0:10265,0:-923.416,-86.3956,0,-923.416,-86.3956,-923.416	1/2:136:0,86,50:0:0:86,50:3088,1781:-397.421,-145.519,-119.631,-252.259,0,-237.207	1/1:135:0,135,0:0:0:135,0:4856,0:-437.191,-40.6391,0,-437.191,-40.6391,-437.191	1/2:132:0,77,54:0:0:77,54:2760,1897:-379.539,-154.444,-131.265,-225.158,0,-208.903	1/2:170:0,86,82:0:0:86,82:3076,2928:-489.661,-238.838,-212.949,-250.946,0,-226.262	1/1:116:0,114,0:0:0:114,0:4074,0:-366.52,-34.3174,0,-366.52,-34.3174,-366.52	1/1:503:0,499,0:0:0:499,0:17863,0:-1606.65,-150.214,0,-1606.65,-150.214,-1606.65	1/2:176:0,91,80:0:0:91,80:3250,2855:-497.742,-232.772,-205.378,-264.993,0,-240.911	1/1:35:0,34,0:0:0:34,0:1215,0:-109.403,-10.235,0,-109.403,-10.235,-109.403	1/2:290:0,154,130:0:0:154,130:5524,4641:-828.963,-378.399,-332.04,-450.604,0,-411.47	1/2:139:0,68,70:0:0:68,70:2435,2495:-401.947,-203.371,-182.901,-198.573,0,-177.501	1/1:173:0,173,0:0:0:173,0:6199,0:-557.992,-52.0782,0,-557.992,-52.0782,-557.992	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:3:0,3,0:0:0:3,0:108,0:-10.0717,-0.90309,0,-10.0717,-0.90309,-10.0717	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:257:0,111,145:0:0:111,145:3970,5150:-743.134,-419.694,-386.279,-323.496,0,-279.847	1/2:233:0,123,108:0:0:123,108:4390,3828:-669.539,-311.842,-274.815,-357.692,0,-325.181	1/1:59:0,58,0:0:0:58,0:2070,0:-186.245,-17.4597,0,-186.245,-17.4597,-186.245	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:188:0,182,6:0:0:182,6:6528,216:-587.237,-54.7875,0,-569.612,-36.8031,-567.806	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9144,-8.72987,0,-93.9144,-8.72987,-93.9144	1/2:95:0,47,46:0:0:47,46:1675,1627:-269.044,-132.511,-118.363,-136.528,0,-122.681	1/2:120:0,58,61:0:0:58,61:2084,2187:-348.376,-178.364,-160.904,-170.01,0,-151.648	1/2:90:0,44,45:0:0:44,45:1567,1603:-258.372,-130.653,-117.408,-127.715,0,-114.169	1/2:121:0,61,60:0:0:61,60:2172,2132:-351.059,-174.087,-155.724,-177.328,0,-159.266	1/1:181:0,179,0:0:0:179,0:6398,0:-575.623,-53.8844,0,-575.623,-53.8844,-575.623	1/1:168:0,166,0:0:0:166,0:5947,0:-534.974,-49.971,0,-534.974,-49.971,-534.974	1/1:186:0,185,0:0:0:185,0:6640,0:-597.376,-55.6906,0,-597.376,-55.6906,-597.376	1/2:210:0,100,109:0:0:100,109:3584,3860:-606.732,-314.425,-284.322,-292.303,0,-259.491	1/2:250:0,139,109:0:0:139,109:4974,3874:-721.332,-315.723,-273.88,-405.644,0,-372.832	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:148:0,147,0:0:0:147,0:5274,0:-474.434,-44.2514,0,-474.434,-44.2514,-474.434	1/2:37:0,26,11:0:0:26,11:932,396:-108.68,-32.6714,-24.8446,-76.3675,0,-73.0561	1/2:4:0,1,2:0:0:1,2:36,63:-8.04163,-5.09008,-4.78905,-2.97734,0,-2.37528	1/2:191:0,93,96:0:0:93,96:3294,3422:-547.175,-278.933,-250.938,-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chr06	999507	.	C	T	172003	PASS	AB=0.513077;ABP=9.99567;AC=143;AF=0.760638;AN=188;AO=8198;CIGAR=1X;DP=10505;DPB=10505;DPRA=0;EPP=17770;EPPR=5003.91;GTI=1;LEN=1;MEANALT=1.04255;MQM=47.0544;MQMR=59.254;NS=94;NUMALT=1;ODDS=1.36404;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293288;QR=82195;RO=2303;RPL=8194;RPP=17770;RPPR=5003.91;RPR=4;RUN=1;SAF=8198;SAP=17804.7;SAR=0;SRF=2303;SRP=5003.91;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:86:0,86:0:0:86:3064:-273.938,-25.8886,0	1/1:146:0,146:0:0:146:5208:-461.889,-43.9504,0	0/1:100:45,55:45:1601:55:1963:-145.473,0,-114.26	1/1:290:0,290:0:0:290:10380:-921.609,-87.2987,0	0/1:99:53,46:53:1892:46:1648:-117.757,0,-140.739	0/1:69:32,37:32:1148:37:1320:-96.8521,0,-82.8588	1/1:144:0,144:0:0:144:5126:-456.186,-43.3483,0	0/1:164:78,86:78:2788:86:3080:-226.054,0,-201.566	0/1:120:67,53:67:2412:53:1900:-133.467,0,-180.831	0/1:115:44,71:44:1548:71:2526:-190.208,0,-104.707	0/1:75:40,35:40:1427:35:1245:-88.321,0,-106.107	1/1:69:1,68:1:21:68:2411:-213.792,-18.6711,0	0/1:71:32,39:32:1127:39:1391:-102.376,0,-80.346	0/1:49:24,25:24:856:25:880:-64.2136,0,-62.6083	1/1:76:0,76:0:0:76:2717:-241.997,-22.8783,0	0/1:53:35,18:35:1247:18:648:-41.4033,0,-96.5649	1/1:66:0,66:0:0:66:2321:-207.607,-19.868,0	0/1:60:26,34:26:923:34:1202:-89.5122,0,-65.2856	1/1:47:0,47:0:0:47:1669:-149.406,-14.1484,0	1/1:195:0,195:0:0:195:6996:-621.87,-58.7009,0	0/1:175:96,78:96:3374:78:2808:-197.273,0,-250.798	1/1:181:0,181:0:0:181:6483:-576.602,-54.4864,0	0/1:101:50,51:50:1788:51:1832:-132.944,0,-130.467	0/1:185:51,134:51:1836:134:4796:-371.159,0,-109.73	1/1:95:0,95:0:0:95:3408:-304.234,-28.5979,0	1/1:395:1,394:1:36:394:14128:-1251,-115.324,0	0/1:182:87,95:87:3103:95:3412:-249.063,0,-224.406	1/1:29:0,29:0:0:29:1040:-92.8554,-8.72987,0	0/1:340:179,161:179:6411:161:5758:-408.1,0,-474.59	0/1:107:48,59:48:1707:59:2103:-155.459,0,-121.664	1/1:149:0,149:0:0:149:5335:-475.014,-44.8535,0	0/1:14:11,3:11:388:3:108:-5.7912,0,-31.0291	1/1:23:0,23:0:0:23:824:-73.6888,-6.92369,0	0/1:14:2,12:2:72:12:432:-34.7941,0,-2.6223	0/1:20:16,4:16:576:4:144:-7.22084,0,-46.1406	1/1:14:0,14:0:0:14:500:-45.0984,-4.21442,0	0/1:240:120,119:120:4304:119:4261:-306.325,0,-314.775	1/1:280:1,279:1:36:279:9997:-886.947,-80.6901,0	1/1:64:0,64:0:0:64:2287:-204.65,-19.2659,0	0/1:12:7,5:7:252:5:180:-12.5243,0,-19.4166	1/1:134:2,132:2:72:132:4733:-415.98,-33.5013,0	1/1:47:0,47:0:0:47:1683:-150.223,-14.1484,0	0/1:139:79,60:79:2840:60:2152:-149.857,0,-213.967	0/1:81:41,40:41:1468:40:1417:-101.256,0,-108.013	0/1:84:36,48:36:1296:48:1719:-126.316,0,-91.6425	0/1:116:45,71:45:1616:71:2543:-191.528,0,-110.765	1/1:152:0,152:0:0:152:5407:-482.982,-45.7566,0	1/1:183:0,183:0:0:183:6563:-582.742,-55.0885,0	1/1:135:1,134:1:36:134:4812:-425.092,-37.9028,0	0/1:153:87,66:87:3091:66:2363:-164.638,0,-232.323	0/1:254:79,175:79:2817:175:6288:-479.652,0,-177.204	1/1:20:0,20:0:0:20:720:-64.5593,-6.0206,0	1/1:142:0,142:0:0:142:5088:-453.684,-42.7463,0	0/1:58:25,33:25:900:33:1188:-88.8459,0,-63.7925	0/1:5:2,3:2:72:3:108:-8.5154,0,-5.32298	0/1:204:100,104:100:3560:104:3708:-269.446,0,-258.844	1/1:87:0,87:0:0:87:3120:-276.42,-26.1896,0	0/1:19:9,10:9:324:10:360:-26.4042,0,-23.7863	0/1:31:28,3:28:991:3:108:-0.655145,0,-80.1253	1/1:75:0,75:0:0:75:2695:-239.874,-22.5773,0	1/1:113:3,110:3:108:110:3959:-342.02,-23.9412,0	0/1:9:8,1:8:288:1:36:-0.857543,0,-23.5581	1/1:247:0,247:0:0:247:8873:-787.568,-74.3544,0	1/1:268:1,267:1:32:267:9543:-843.686,-77.4771,0	1/1:65:0,65:0:0:65:2309:-206.056,-19.567,0	1/1:94:0,94:0:0:94:3368:-299.175,-28.2968,0	1/1:182:2,180:2:72:180:6460:-566.95,-47.9507,0	1/1:136:1,135:1:36:135:4844:-426.62,-37.3418,0	1/1:16:0,16:0:0:16:576:-51.5269,-4.81648,0	1/1:106:0,106:0:0:106:3786:-338.405,-31.9092,0	1/1:87:0,87:0:0:87:3083:-274.719,-26.1896,0	0/1:31:18,13:18:648:13:468:-32.7565,0,-48.5393	1/1:40:0,40:0:0:40:1435:-125.86,-12.0412,0	0/1:61:47,14:47:1684:14:504:-26.7897,0,-133.404	0/1:182:49,132:49:1756:132:4731:-366.633,0,-102.989	0/1:171:100,71:100:3561:71:2556:-176.064,0,-269.121	1/1:103:0,103:0:0:103:3675:-328.43,-31.0061,0	1/1:106:0,106:0:0:106:3812:-339.573,-31.9092,0	0/1:26:12,13:12:432:13:468:-33.4337,0,-31.3236	1/1:139:2,137:2:72:137:4919:-431.797,-35.0064,0	1/1:121:0,121:0:0:121:4310:-383.598,-36.4246,0	0/1:254:110,144:110:3921:144:5137:-379.571,0,-276.552	1/1:95:0,95:0:0:95:3384:-301.137,-28.5979,0	1/1:54:0,54:0:0:54:1935:-172.175,-16.2556,0	0/1:105:56,49:56:1986:49:1745:-123.997,0,-147.369	1/1:152:2,150:2:72:150:5316:-465.506,-38.9198,0	0/1:47:24,23:24:864:23:809:-57.4499,0,-63.8989	1/1:76:0,76:0:0:76:2714:-242.341,-22.8783,0	0/1:96:51,45:51:1828:45:1620:-116.355,0,-135.848	1/1:52:0,52:0:0:52:1859:-164.514,-15.6536,0	0/1:123:70,53:70:2489:53:1904:-133.439,0,-187.165	0/1:89:67,22:67:2390:22:783:-43.0547,0,-188.295	1/1:131:0,131:0:0:131:4703:-416.563,-39.4349,0	1/1:95:0,95:0:0:95:3358:-299.618,-28.5979,0
chr06	999512	.	A	G	171063	PASS	AB=0.512761;ABP=9.66049;AC=143;AF=0.760638;AN=188;AO=8195;CIGAR=1X;DP=10509;DPB=10509;DPRA=0;EPP=17780.9;EPPR=5012.6;GTI=1;LEN=1;MEANALT=1.05319;MQM=47.0415;MQMR=59.2484;NS=94;NUMALT=1;ODDS=0.735687;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=292433;QR=82720;RO=2307;RPL=8193;RPP=17780.9;RPPR=5012.6;RPR=2;RUN=1;SAF=8195;SAP=17798.2;SAR=0;SRF=2307;SRP=5012.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:87:0,87:0:0:87:3085:-275.83,-26.1896,0	1/1:144:0,144:0:0:144:5156:-457.365,-43.3483,0	0/1:97:45,52:45:1608:52:1853:-136.653,0,-115.795	1/1:288:0,288:0:0:288:10270:-912.561,-86.6966,0	0/1:97:52,45:52:1864:45:1616:-115.49,0,-138.822	0/1:68:32,36:32:1152:36:1292:-94.3389,0,-83.5201	1/1:144:0,143:0:0:143:5113:-454.345,-43.0473,0	0/1:165:79,86:79:2821:86:3064:-224.324,0,-204.375	0/1:121:68,51:68:2448:51:1832:-127.316,0,-184.013	0/1:112:44,68:44:1576:68:2427:-182.758,0,-108.402	0/1:75:40,35:40:1440:35:1247:-88.2185,0,-107.278	1/1:68:1,67:1:36:67:2380:-209.235,-16.8718,0	0/1:72:31,41:31:1104:41:1457:-107.688,0,-77.9776	0/1:51:24,27:24:860:27:944:-69.0767,0,-62.367	1/1:75:0,75:0:0:75:2678:-238.558,-22.5773,0	0/1:52:35,17:35:1260:17:612:-38.4879,0,-98.0378	1/1:67:0,67:0:0:67:2383:-213.155,-20.169,0	0/1:60:26,34:26:932:34:1216:-90.7843,0,-66.0823	1/1:47:0,47:0:0:47:1646:-147.37,-14.1484,0	1/1:198:1,197:1:36:197:7046:-622.341,-56.0057,0	0/1:174:96,78:96:3432:78:2789:-195.979,0,-256.246	1/1:182:0,182:0:0:182:6504:-578.329,-54.7875,0	0/1:101:49,52:49:1756:52:1872:-136.492,0,-127.588	0/1:188:51,137:51:1836:137:4896:-379.223,0,-108.827	1/1:96:0,96:0:0:96:3439:-307.004,-28.8989,0	1/1:405:1,404:1:36:404:14450:-1276.92,-118.334,0	0/1:182:88,94:88:3147:94:3358:-244.285,0,-228.087	1/1:29:0,29:0:0:29:1036:-92.5083,-8.72987,0	0/1:338:176,161:176:6312:161:5764:-408.932,0,-466.256	0/1:106:48,58:48:1728:58:2071:-153.187,0,-123.855	1/1:148:0,148:0:0:148:5286:-470.67,-44.5524,0	0/1:12:10,2:10:360:2:72:-3.17716,0,-29.1181	1/1:22:0,22:0:0:22:792:-71.1162,-6.62266,0	0/1:14:2,12:2:72:12:432:-34.7941,0,-2.6223	0/1:20:16,4:16:576:4:144:-7.22084,0,-46.1406	1/1:13:0,13:0:0:13:464:-41.8817,-3.91339,0	0/1:239:120,119:120:4312:119:4207:-302.407,0,-315.798	1/1:284:1,283:1:36:283:10119:-897.765,-81.8942,0	1/1:63:0,63:0:0:63:2244:-200.354,-18.9649,0	0/1:12:7,5:7:244:5:180:-12.5243,0,-18.6871	1/1:132:2,130:2:68:130:4672:-410.631,-33.2783,0	1/1:47:0,47:0:0:47:1667:-148.781,-14.1484,0	0/1:140:80,60:80:2872:60:2144:-148.452,0,-216.553	0/1:82:41,41:41:1467:41:1447:-103.886,0,-107.627	0/1:85:37,48:37:1328:48:1703:-124.977,0,-94.089	0/1:117:47,70:47:1688:70:2512:-188.46,0,-116.941	1/1:151:0,151:0:0:151:5391:-481.534,-45.4555,0	1/1:188:0,188:0:0:188:6730:-597.703,-56.5936,0	1/1:137:1,136:1:36:136:4856:-429.069,-38.5049,0	0/1:154:87,67:87:3128:67:2408:-167.692,0,-235.329	0/1:253:80,173:80:2860:173:6182:-470.765,0,-181.369	1/1:21:0,21:0:0:21:752:-67.4253,-6.32163,0	1/1:139:0,137:0:0:137:4882:-434.935,-41.2411,0	0/1:58:25,33:25:896:33:1188:-88.8459,0,-63.4318	0/1:6:2,4:2:72:4:140:-11.077,0,-5.02195	0/1:209:101,108:101:3612:108:3850:-280.541,0,-262.007	1/1:89:0,89:0:0:89:3151:-279.371,-26.7917,0	0/1:19:9,10:9:309:10:360:-26.4042,0,-22.4211	0/1:31:28,3:28:995:3:108:-0.655145,0,-80.2617	1/1:72:0,72:0:0:72:2588:-230.417,-21.6742,0	1/1:116:3,113:3:108:113:4032:-348.61,-24.8443,0	0/1:9:8,1:8:288:1:36:-0.857543,0,-23.5581	1/1:245:0,245:0:0:245:8703:-773.142,-73.7524,0	1/1:269:1,268:1:36:268:9556:-844.837,-77.3798,0	1/1:64:0,64:0:0:64:2260:-201.708,-19.2659,0	1/1:90:0,90:0:0:90:3212:-285.765,-27.0927,0	1/1:182:2,180:2:72:180:6417:-563.562,-47.9507,0	1/1:133:1,132:1:36:132:4720:-416.415,-36.4387,0	1/1:16:0,16:0:0:16:576:-51.5269,-4.81648,0	1/1:102:0,102:0:0:102:3647:-326.195,-30.7051,0	1/1:87:0,87:0:0:87:3094:-275.747,-26.1896,0	0/1:28:15,13:15:536:13:464:-33.3143,0,-39.6522	1/1:40:0,40:0:0:40:1427:-125.16,-12.0412,0	0/1:60:47,13:47:1688:13:468:-23.8696,0,-134.067	0/1:179:52,127:52:1872:127:4529:-349.44,0,-114.371	0/1:172:101,71:101:3617:71:2544:-174.735,0,-273.562	1/1:101:0,101:0:0:101:3610:-322.975,-30.404,0	1/1:105:0,105:0:0:105:3768:-336.265,-31.6082,0	0/1:26:13,13:13:468:13:468:-33.7958,0,-34.6013	1/1:139:2,137:2:72:137:4915:-431.44,-35.0064,0	1/1:121:0,121:0:0:121:4301:-382.561,-36.4246,0	0/1:259:109,150:109:3912:150:5338:-395.818,0,-274.259	1/1:96:0,96:0:0:96:3416:-303.675,-28.8989,0	1/1:53:0,53:0:0:53:1881:-167.455,-15.9546,0	0/1:107:55,52:55:1972:52:1821:-130.135,0,-145.503	1/1:153:3,149:3:108:149:5268:-458.273,-36.0389,0	0/1:45:24,21:24:860:21:748:-51.7203,0,-64.1755	1/1:77:0,77:0:0:77:2746:-245.174,-23.1793,0	0/1:98:53,45:53:1904:45:1616:-115.403,0,-142.083	1/1:49:0,49:0:0:49:1756:-155.619,-14.7505,0	0/1:123:70,53:70:2520:53:1883:-131.653,0,-189.941	0/1:86:65,21:65:2336:21:752:-41.3569,0,-184.611	1/1:136:0,136:0:0:136:4841:-428.458,-40.9401,0	1/1:97:0,97:0:0:97:3453:-307.387,-29.1999,0
chr06	999652	.	T	C	160165	PASS	AB=0.47277;ABP=33.0478;AC=141;AF=0.75;AN=188;AO=7574;CIGAR=1X;DP=10054;DPB=10054;DPRA=54.6196;EPP=16441.1;EPPR=5370.89;GTI=1;LEN=1;MEANALT=1.05435;MQM=59.7197;MQMR=59.9547;NS=94;NUMALT=1;ODDS=3.27547;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=270563;QR=88682;RO=2472;RPL=7574;RPP=16449.7;RPPR=5370.89;RPR=0;RUN=1;SAF=1;SAP=16441.1;SAR=7573;SRF=0;SRP=5370.89;SRR=2472;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:125:0,125:0:0:125:4468:-402.273,-37.6288,0	0/1:123:73,50:73:2624:50:1788:-124.09,0,-199.38	1/1:255:0,255:0:0:255:9081:-817.124,-76.7627,0	0/1:91:47,44:47:1692:44:1561:-113.335,0,-125.173	0/1:84:53,31:53:1893:31:1108:-74.7445,0,-145.36	1/1:113:0,113:0:0:113:4037:-363.507,-34.0164,0	0/1:138:81,57:81:2904:57:2040:-142.33,0,-220.053	0/1:106:65,41:65:2336:41:1472:-100.867,0,-178.59	0/1:99:51,48:51:1836:48:1728:-124.28,0,-135.719	0/1:53:19,34:19:684:34:1216:-93.792,0,-45.9357	1/1:56:0,56:0:0:56:1998:-180.082,-16.8577,0	0/1:88:45,42:45:1616:42:1493:-108.113,0,-119.181	0/1:60:35,25:35:1256:25:892:-62.5189,0,-95.2835	1/1:87:0,87:0:0:87:3112:-280.302,-26.1896,0	0/1:59:29,30:29:1040:30:1080:-79.7505,0,-76.1536	1/1:78:0,78:0:0:78:2800:-252.17,-23.4803,0	0/1:65:27,38:27:972:38:1353:-102.501,0,-68.231	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:254:0,254:0:0:254:9098:-818.554,-76.4616,0	0/1:158:83,75:83:2976:75:2686:-194.421,0,-220.51	1/1:181:0,181:0:0:181:6472:-582.531,-54.4864,0	0/1:146:91,55:91:3268:55:1972:-133.765,0,-250.072	0/1:169:106,63:106:3793:63:2235:-150.534,0,-290.692	1/1:92:0,92:0:0:92:3285:-295.859,-27.6948,0	1/1:352:0,350:0:0:350:12523:-1126.45,-105.361,0	0/1:243:161,82:161:5772:82:2914:-189.341,0,-446.37	1/1:49:0,49:0:0:49:1764:-158.996,-14.7505,0	0/1:249:89,160:89:3188:160:5740:-441.726,0,-212.186	0/1:183:131,52:131:4708:52:1862:-112.654,0,-368.789	1/1:124:1,123:1:36:123:4375:-390.05,-33.7294,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:10:0,10:0:0:10:360:-32.7427,-3.0103,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:274:117,157:117:4200:157:5620:-423.414,0,-295.698	1/1:186:0,186:0:0:186:6610:-594.879,-55.9916,0	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:137:1,136:1:36:136:4864:-434.174,-37.6428,0	1/1:40:0,40:0:0:40:1421:-128.185,-12.0412,0	0/1:157:95,62:95:3408:62:2218:-152.53,0,-259.182	0/1:93:41,52:41:1476:52:1856:-139.198,0,-105.14	0/1:71:33,38:33:1188:38:1343:-99.7727,0,-85.8555	0/1:154:84,70:84:3016:70:2507:-178.882,0,-225.311	1/1:108:0,108:0:0:108:3873:-348.707,-32.5112,0	1/1:172:0,172:0:0:172:6136:-552.285,-51.7772,0	1/1:143:0,142:0:0:142:5076:-456.615,-42.7463,0	0/1:132:75,57:75:2696:57:2029:-143.121,0,-203.148	0/1:201:127,74:127:4552:74:2648:-178.043,0,-349.338	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:128:0,128:0:0:128:4588:-413.075,-38.5318,0	0/1:60:35,25:35:1241:25:900:-63.2592,0,-93.9307	0/1:18:9,9:9:320:9:290:-20.9935,0,-23.7238	0/1:156:68,88:68:2444:88:3153:-236.986,0,-173.253	1/1:50:0,50:0:0:50:1789:-160.691,-15.0515,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	1/1:78:0,78:0:0:78:2778:-250.254,-23.4803,0	1/1:101:0,101:0:0:101:3592:-323.405,-30.404,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:237:0,237:0:0:237:8473:-762.545,-71.3441,0	1/1:234:2,232:2:72:232:8301:-740.249,-63.6043,0	1/1:57:0,57:0:0:57:2028:-182.791,-17.1587,0	1/1:107:0,107:0:0:107:3828:-344.695,-32.2102,0	1/1:212:6,206:6:212:206:7350:-641.915,-44.3936,0	1/1:151:0,151:0:0:151:5359:-482.413,-45.4555,0	1/1:29:0,29:0:0:29:1021:-92.201,-8.72987,0	1/1:81:0,81:0:0:81:2858:-257.431,-24.3834,0	1/1:77:0,77:0:0:77:2745:-247.281,-23.1793,0	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	1/1:86:0,86:0:0:86:3046:-274.361,-25.8886,0	0/1:70:32,38:32:1152:38:1360:-101.627,0,-82.918	0/1:162:65,94:65:2332:94:3368:-255.111,0,-161.916	0/1:165:71,94:71:2537:94:3324:-249.693,0,-178.909	1/1:80:0,80:0:0:80:2868:-258.356,-24.0824,0	1/1:68:2,66:2:72:66:2364:-206.178,-13.6333,0	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	1/1:140:0,140:0:0:140:5011:-450.336,-42.1442,0	1/1:95:0,95:0:0:95:3400:-306.159,-28.5979,0	0/1:325:139,186:139:4973:186:6665:-502.081,0,-349.865	1/1:121:0,120:0:0:120:4300:-386.8,-36.1236,0	1/1:61:0,61:0:0:61:2185:-196.902,-18.3628,0	0/1:98:46,52:46:1652:52:1868:-138.887,0,-119.468	1/1:142:1,141:1:36:141:5036:-449.526,-39.148,0	0/1:47:27,20:27:972:20:712:-50.2582,0,-73.6495	1/1:86:0,86:0:0:86:3075:-276.97,-25.8886,0	0/1:70:37,33:37:1328:33:1180:-85.4359,0,-98.7501	1/1:25:0,25:0:0:25:882:-79.4683,-7.52575,0	0/1:119:61,58:61:2196:58:2082:-151.827,0,-162.082	0/1:97:64,33:64:2285:33:1188:-77.991,0,-176.71	1/1:95:0,95:0:0:95:3370:-303.506,-28.5979,0	1/1:93:0,93:0:0:93:3336:-300.387,-27.9958,0
chr06	1002174	.	GA	GG,TG	123958	PASS	AB=0.519186,0.48043;ABP=11.3429,11.6795;AC=144,44;AF=0.765957,0.234043;AN=188;AO=4396,1267;CIGAR=1M1X,2X;DP=5666;DPB=5666;DPRA=10.1434,1.16319;EPP=9298.57,2617.05;EPPR=5.18177;GTI=3;LEN=1,2;MEANALT=1.56989,2;MQM=53.6968,59.2715;MQMR=60;NS=94;NUMALT=2;ODDS=0.280301;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=157269,44979;QR=34;RO=1;RPL=4396,1263;RPP=9548.8,2719.63;RPPR=5.18177;RPR=0,4;RUN=1,1;SAF=29,12;SAP=9298.57,2651.02;SAR=4367,1255;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12,0:0:0:12,0:432,0:-39.08,-3.61236,0,-39.08,-3.61236,-39.08	1/1:41:0,41,0:0:0:41,0:1464,0:-131.73,-12.3422,0,-131.73,-12.3422,-131.73	1/2:151:0,81,70:0:0:81,70:2900,2486:-436.669,-202.577,-178.193,-234.446,0,-213.374	1/1:100:0,100,0:0:0:100,0:3592,0:-322.91,-30.103,0,-322.91,-30.103,-322.91	1/2:20:0,7,13:0:0:7,13:252,449:-57.3591,-36.8244,-34.7172,-20.8891,0,-16.9757	1/2:21:0,12,9:0:0:12,9:428,309:-59.5316,-25.4325,-21.8202,-34.4448,0,-31.7355	1/1:39:0,39,0:0:0:39,0:1392,0:-124.967,-11.7402,0,-124.967,-11.7402,-124.967	1/2:62:0,31,31:0:0:31,31:1112,1112:-181.261,-91.0544,-81.7225,-90.5645,0,-81.2326	1/2:73:0,43,30:0:0:43,30:1536,1056:-210.152,-85.5384,-72.5941,-124.966,0,-115.935	1/2:69:0,27,42:0:0:27,42:968,1498:-200.869,-122.466,-114.339,-78.7586,0,-66.1153	1/2:59:0,25,34:0:0:25,34:900,1208:-172.119,-98.7859,-91.2601,-73.6904,0,-63.4554	1/1:70:0,70,0:0:0:70,0:2516,0:-225.579,-21.0721,0,-225.579,-21.0721,-225.579	1/2:67:0,34,33:0:0:34,33:1224,1165:-194.286,-94.9414,-84.7064,-99.6995,0,-89.7655	1/2:43:0,22,21:0:0:22,21:792,710:-122.014,-57.7258,-51.1031,-64.6352,0,-58.3136	1/1:82:0,82,0:0:0:82,0:2935,0:-263.594,-24.6845,0,-263.594,-24.6845,-263.594	1/2:63:0,31,32:0:0:31,32:1114,1148:-184.367,-93.9833,-84.6513,-90.7413,0,-81.1083	1/1:37:0,36,0:0:0:36,0:1292,0:-115.11,-10.8371,0,-115.11,-10.8371,-115.11	1/2:23:0,10,13:0:0:10,13:360,462:-67.2896,-37.9952,-34.9849,-29.6517,0,-25.7383	1/1:49:0,49,0:0:0:49,0:1760,0:-156.331,-14.7505,0,-156.331,-14.7505,-156.331	1/1:97:0,97,0:0:0:97,0:3476,0:-312.122,-29.1999,0,-312.122,-29.1999,-312.122	1/2:137:0,97,40:0:0:97,40:3463,1427:-396.44,-116.665,-87.4654,-280.131,0,-268.089	1/1:41:0,41,0:0:0:41,0:1456,0:-131.154,-12.3422,0,-131.154,-12.3422,-131.154	1/2:73:0,45,28:0:0:45,28:1594,1008:-211.753,-82.2847,-68.7383,-129.825,0,-121.396	1/2:34:0,17,17:0:0:17,17:612,610:-99.6593,-50.1153,-44.9978,-49.9019,0,-44.7844	1/1:49:0,49,0:0:0:49,0:1760,0:-158.331,-14.7505,0,-158.331,-14.7505,-158.331	1/1:168:0,167,1:0:0:167,1:5964,36:-534.422,-50.272,0,-531.754,-47.274,-531.453	1/2:134:0,96,38:0:0:96,38:3435,1349:-389.829,-110.223,-81.3245,-279.961,0,-268.521	1/1:31:0,31,0:0:0:31,0:1112,0:-100.149,-9.33193,0,-100.149,-9.33193,-100.149	1/2:152:0,67,85:0:0:67,85:2408,3020:-442.651,-246.438,-226.269,-196.57,0,-170.982	1/2:28:0,10,18:0:0:10,18:360,648:-82.5568,-53.2287,-50.2184,-29.6876,0,-24.269	1/1:83:0,83,0:0:0:83,0:2980,0:-267.898,-24.9855,0,-267.898,-24.9855,-267.898	1/2:6:0,5,1:0:0:5,1:180,36:-17.9609,-3.29724,-1.79209,-15.0234,0,-14.7224	1/1:4:0,4,0:0:0:4,0:144,0:-13.2947,-1.20412,0,-13.2947,-1.20412,-13.2947	2/2:6:0,0,6:0:0:0,6:0,216:-19.7822,-19.7822,-19.7822,-1.80618,-1.80618,0	1/1:4:0,4,0:0:0:4,0:144,0:-13.2776,-1.20412,0,-13.2776,-1.20412,-13.2776	1/1:10:0,10,0:0:0:10,0:355,0:-32.1083,-3.0103,0,-32.1083,-3.0103,-32.1083	1/2:164:0,77,86:0:0:77,86:2755,3059:-473.391,-249.228,-226.049,-224.162,0,-198.274	1/1:34:0,34,0:0:0:34,0:1211,0:-108.846,-10.235,0,-108.846,-10.235,-108.846	1/1:48:0,47,1:0:0:47,1:1671,36:-149.092,-14.1484,0,-146.26,-10.9687,-145.959	1/2:4:0,1,3:0:0:1,3:36,108:-11.9765,-9.17208,-8.87105,-3.15346,0,-2.25037	1/1:37:0,36,1:0:0:36,1:1277,25:-114.393,-10.8371,0,-112.447,-8.63825,-112.146	1/1:28:0,28,0:0:0:28,0:1008,0:-90.6799,-8.42884,0,-90.6799,-8.42884,-90.6799	1/2:65:0,38,27:0:0:38,27:1358,948:-186.704,-77.4942,-66.0551,-109.562,0,-101.434	1/2:60:0,30,30:0:0:30,30:1080,1065:-175.052,-87.1252,-78.0943,-88.2836,0,-79.2527	1/2:59:0,30,29:0:0:30,29:1072,1042:-172.701,-85.3648,-76.3339,-87.694,0,-78.9642	1/2:53:0,21,32:0:0:21,32:743,1141:-153.667,-93.3561,-87.0345,-60.6651,0,-51.0322	1/1:61:0,61,0:0:0:61,0:2184,0:-193.851,-18.3628,0,-193.851,-18.3628,-193.851	1/1:77:0,77,0:0:0:77,0:2755,0:-247.785,-23.1793,0,-247.785,-23.1793,-247.785	1/1:60:0,59,1:0:0:59,1:2093,36:-187.25,-17.7608,0,-184.357,-14.5133,-184.056	1/2:80:0,47,33:0:0:47,33:1685,1160:-231.851,-94.7678,-80.6194,-137.437,0,-127.504	1/2:40:0,16,24:0:0:16,24:561,845:-114.779,-69.1437,-64.3272,-45.9868,0,-38.7621	1/1:2:0,2,0:0:0:2,0:72,0:-6.83179,-0.60206,0,-6.83179,-0.60206,-6.83179	1/1:121:0,121,0:0:0:121,0:4320,0:-387.324,-36.4246,0,-387.324,-36.4246,-387.324	1/2:45:0,26,19:0:0:26,19:927,682:-131.512,-55.9903,-48.1635,-75.8794,0,-70.1598	1/1:2:0,2,0:0:0:2,0:62,0:-5.87164,-0.60206,0,-5.87164,-0.60206,-5.87164	1/2:97:0,53,44:0:0:53,44:1900,1537:-278.747,-125.347,-109.392,-153.752,0,-140.507	1/1:22:0,22,0:0:0:22,0:780,0:-70.3641,-6.62266,0,-70.3641,-6.62266,-70.3641	1/2:3:0,2,1:0:0:2,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chr06	1002180	.	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chr06	1002194	.	CA	CC	90848	PASS	AB=0.518735;ABP=10.8215;AC=144;AF=0.765957;AN=188;AO=4317;CIGAR=1M1X;DP=5564;DPB=5564;DPRA=9.96057;EPP=9377.26;EPPR=2693.46;GTI=3;LEN=1;MEANALT=1.06452;MQM=53.6845;MQMR=59.3826;NS=94;NUMALT=1;ODDS=0.508893;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154025;QR=43815;RO=1239;RPL=4317;RPP=9377.26;RPPR=2693.46;RPR=0;RUN=1;SAF=0;SAP=9377.26;SAR=4317;SRF=0;SRP=2693.46;SRR=1239;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:360:-32.6249,-3.0103,0	1/1:41:0,41:0:0:41:1464:-131.723,-12.3422,0	0/1:147:69,77:69:2422:77:2758:-202.49,0,-173.786	1/1:102:0,102:0:0:102:3640:-327.296,-30.7051,0	0/1:13:6,7:6:216:7:248:-18.7209,0,-15.8771	0/1:21:9,12:9:322:12:421:-31.5203,0,-23.0026	1/1:37:0,37:0:0:37:1332:-119.568,-11.1381,0	0/1:61:31,30:31:1104:30:1076:-78.3033,0,-81.2993	0/1:73:31,42:31:1099:42:1485:-111.504,0,-77.075	0/1:68:42,26:42:1485:26:928:-63.0396,0,-113.469	0/1:56:32,24:32:1053:24:860:-60.5726,0,-78.2031	1/1:71:1,70:1:36:70:2500:-220.473,-17.7749,0	0/1:67:32,34:32:1136:34:1216:-89.0199,0,-82.2496	0/1:43:22,21:22:779:21:752:-54.7168,0,-56.7026	1/1:85:0,85:0:0:85:3048:-273.621,-25.5876,0	0/1:63:32,31:32:1148:31:1112:-80.9148,0,-84.653	1/1:35:0,35:0:0:35:1256:-112.715,-10.5361,0	0/1:23:13,10:13:466:10:360:-25.7383,0,-35.3468	1/1:45:0,45:0:0:45:1620:-145.058,-13.5464,0	1/1:96:0,96:0:0:96:3430:-308.039,-28.8989,0	0/1:130:38,92:38:1345:92:3276:-253.675,0,-82.2002	1/1:35:0,35:0:0:35:1252:-112.803,-10.5361,0	0/1:72:28,44:28:1002:44:1580:-120.397,0,-68.4998	0/1:35:17,18:17:608:18:644:-47.361,0,-44.516	1/1:47:0,47:0:0:47:1679:-151.108,-14.1484,0	1/1:162:0,162:0:0:162:5788:-518.94,-48.7669,0	0/1:134:38,96:38:1322:96:3428:-267.671,0,-78.8878	1/1:31:0,31:0:0:31:1093:-98.4456,-9.33193,0	0/1:153:85,68:85:3045:68:2416:-171.404,0,-228.216	0/1:28:17,11:17:606:11:396:-27.5029,0,-46.438	1/1:81:0,81:0:0:81:2884:-259.216,-24.3834,0	0/1:6:1,5:1:36:5:176:-14.3582,0,-1.79209	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7822	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	1/1:9:0,9:0:0:9:324:-29.4317,-2.70927,0	0/1:164:86,78:86:2998:78:2769:-199.749,0,-220.614	1/1:34:0,34:0:0:34:1220:-109.548,-10.235,0	1/1:50:0,50:0:0:50:1776:-158.755,-15.0515,0	0/1:4:3,1:3:108:1:36:-2.25037,0,-8.87105	1/1:38:1,37:1:36:37:1312:-114.162,-7.84087,0	1/1:28:0,28:0:0:28:990:-89.0848,-8.42884,0	0/1:62:25,37:25:871:37:1324:-99.3183,0,-60.0167	0/1:59:29,29:29:1042:29:1044:-76.288,0,-76.2758	0/1:58:29,29:29:1044:29:1040:-76.388,0,-76.8151	0/1:53:32,21:32:1144:21:752:-51.8434,0,-87.3061	1/1:61:0,60:0:0:60:2129:-189.472,-18.0618,0	1/1:68:0,68:0:0:68:2428:-218.442,-20.47,0	1/1:58:0,58:0:0:58:2060:-184.668,-17.4597,0	0/1:78:33,45:33:1165:45:1620:-122.306,0,-81.6467	0/1:39:23,16:23:816:16:572:-40.0539,0,-62.0218	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:117:0,117:0:0:117:4196:-376.235,-35.2205,0	0/1:45:19,26:19:682:26:928:-70.2053,0,-48.1635	1/1:2:0,2:0:0:2:72:-6.75472,-0.60206,0	0/1:95:43,52:43:1488:52:1857:-138.054,0,-105.591	1/1:21:0,21:0:0:21:744:-67.1422,-6.32163,0	0/1:3:1,2:1:36:2:72:-5.93172,0,-1.28006	0/1:7:6,1:6:214:1:36:-1.49006,0,-17.5	1/1:50:0,50:0:0:50:1783:-160.177,-15.0515,0	1/1:65:0,65:0:0:65:2325:-207.734,-19.567,0	0/1:5:2,3:2:68:3:108:-8.56275,0,-4.95256	1/1:125:0,125:0:0:125:4472:-401.914,-37.6288,0	1/1:112:0,112:0:0:112:3991:-357.713,-33.7154,0	1/1:19:0,19:0:0:19:676:-61.0304,-5.71957,0	1/1:44:0,44:0:0:44:1576:-142.013,-13.2453,0	1/1:151:0,151:0:0:151:5398:-484.708,-45.4555,0	1/1:105:1,104:1:36:104:3716:-330.339,-28.0099,0	1/1:45:0,45:0:0:45:1608:-144.631,-13.5464,0	1/1:23:0,23:0:0:23:816:-73.3918,-6.92369,0	1/1:28:0,28:0:0:28:992:-89.1982,-8.42884,0	0/1:16:9,7:9:276:7:248:-17.8325,0,-20.3215	1/1:42:0,39:0:0:39:1369:-122.85,-11.7402,0	0/1:80:39,41:39:1389:41:1472:-108.042,0,-101.225	0/1:77:48,29:48:1714:29:1024:-68.6743,0,-131.357	0/1:113:53,60:53:1884:60:2152:-159.706,0,-135.707	1/1:52:0,52:0:0:52:1858:-166.91,-15.6536,0	1/1:60:1,59:1:36:59:2082:-182.529,-14.4635,0	0/1:12:6,6:6:216:6:216:-16.1284,0,-16.1782	1/1:78:0,78:0:0:78:2773:-248.134,-23.4803,0	1/1:74:0,74:0:0:74:2629:-234.538,-22.2762,0	0/1:134:67,67:67:2393:67:2388:-173.739,0,-175.266	1/1:53:0,53:0:0:53:1892:-170.181,-15.9546,0	1/1:67:0,67:0:0:67:2388:-214.649,-20.169,0	0/1:52:33,19:33:1173:19:684:-46.0681,0,-90.2032	1/1:117:0,117:0:0:117:4175:-375.172,-35.2205,0	0/1:25:14,11:14:504:11:388:-27.1649,0,-38.1559	1/1:69:0,69:0:0:69:2463:-221.112,-20.7711,0	0/1:66:23,42:23:828:42:1483:-112.858,0,-54.8578	1/1:36:0,36:0:0:36:1292:-115.77,-10.8371,0	0/1:100:60,40:60:2100:40:1406:-96.0571,0,-159.021	0/1:22:3,19:3:108:19:684:-55.0286,0,-3.45009	1/1:106:0,106:0:0:106:3751:-336.839,-31.9092,0	1/1:102:0,102:0:0:102:3644:-326.787,-30.7051,0
chr06	1002540	.	AAATC	GAATA,AAATA	142651	PASS	AB=0.488273,0.50924;ABP=6.37168,5.09689;AC=142,46;AF=0.755319,0.244681;AN=188;AO=5086,1436;CIGAR=1X3M1X,4M1X;DP=6547;DPB=6547;DPRA=70.3871,0.818106;EPP=10745.2,3026.43;EPPR=5.18177;GTI=4;LEN=5,1;MEANALT=1.73118,2.10638;MQM=59.9797,59.9896;MQMR=60;NS=94;NUMALT=2;ODDS=0.117976;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=179977,51423;QR=31;RO=1;RPL=35,11;RPP=10745.2,3026.43;RPPR=5.18177;RPR=5051,1425;RUN=1,1;SAF=5086,1436;SAP=11047.1,3121.24;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37,0:0:0:37,0:1320,0:-119.101,-11.1381,0,-119.101,-11.1381,-119.101	1/1:53:0,53,0:0:0:53,0:1864,0:-168.039,-15.9546,0,-168.039,-15.9546,-168.039	1/2:116:0,55,61:0:0:55,61:1953,2188:-337.91,-178.778,-162.221,-159.488,0,-141.126	1/1:171:0,170,0:0:0:170,0:6022,0:-541.732,-51.1751,0,-541.732,-51.1751,-541.732	1/2:36:0,20,16:0:0:20,16:703,576:-104.576,-47.3585,-41.3379,-57.5738,0,-52.7573	1/2:12:0,10,2:0:0:10,2:359,68:-35.1559,-5.85565,-2.84535,-29.6433,0,-29.0413	1/1:60:0,60,0:0:0:60,0:2139,0:-192.777,-18.0618,0,-192.777,-18.0618,-192.777	1/2:101:0,53,48:0:0:53,48:1864,1724:-292.724,-140.996,-125.041,-152.084,0,-137.634	1/2:49:0,28,21:0:0:28,21:990,752:-142.315,-61.6846,-53.2558,-80.9859,0,-74.6643	1/2:56:0,27,29:0:0:27,29:957,1040:-163.146,-85.1845,-77.0567,-78.3181,0,-69.5882	1/2:42:0,17,25:0:0:17,25:589,896:-121.299,-73.4346,-68.3171,-48.2158,0,-40.6901	1/1:85:0,85,0:0:0:85,0:3004,0:-270.593,-25.5876,0,-270.593,-25.5876,-270.593	1/2:67:0,30,37:0:0:30,37:1070,1321:-195.278,-108.054,-99.0226,-87.5815,0,-76.4434	1/2:47:0,19,28:0:0:19,28:668,1000:-136.259,-81.8865,-76.167,-54.726,0,-46.2972	1/1:56:0,56,0:0:0:56,0:1985,0:-178.924,-16.8577,0,-178.924,-16.8577,-178.924	1/2:48:0,25,22:0:0:25,22:894,773:-135.808,-62.9074,-55.3816,-72.8949,0,-66.2722	1/1:24:0,23,1:0:0:23,1:820,36:-73.7626,-6.92369,0,-70.8251,-3.62645,-70.524	1/2:30:0,9,21:0:0:9,21:317,756:-87.8517,-62.0456,-59.3363,-26.1605,0,-19.8389	1/1:20:0,19,0:0:0:19,0:682,0:-61.3691,-5.71957,0,-61.3691,-5.71957,-61.3691	1/1:120:0,118,0:0:0:118,0:4186,0:-376.565,-35.5215,0,-376.565,-35.5215,-376.565	1/2:101:0,44,56:0:0:44,56:1566,2016:-292.203,-164.574,-151.329,-127.705,0,-110.847	1/1:89:0,88,0:0:0:88,0:3119,0:-280.666,-26.4906,0,-280.666,-26.4906,-280.666	1/2:49:0,22,26:0:0:22,26:788,932:-140.277,-76.0123,-69.3896,-64.2627,0,-56.4359	1/2:25:0,14,11:0:0:14,11:481,396:-71.7198,-32.6714,-28.457,-39.401,0,-36.0897	1/1:66:0,65,0:0:0:65,0:2305,0:-207.458,-19.567,0,-207.458,-19.567,-207.458	1/1:176:0,174,0:0:0:174,0:6137,0:-552.152,-52.3792,0,-552.152,-52.3792,-552.152	1/2:169:0,97,72:0:0:97,72:3447,2592:-492.741,-211.854,-182.654,-281.245,0,-259.571	1/1:32:0,32,0:0:0:32,0:1147,0:-103.54,-9.63296,0,-103.54,-9.63296,-103.54	1/2:227:0,128,99:0:0:128,99:4495,3541:-654.92,-289.095,-250.563,-366.18,0,-336.378	1/2:115:0,67,48:0:0:67,48:2367,1724:-333.755,-140.996,-120.827,-193.115,0,-178.666	1/1:101:0,101,0:0:0:101,0:3562,0:-320.793,-30.404,0,-320.793,-30.404,-320.793	1/2:10:0,8,2:0:0:8,2:278,72:-28.8251,-6.23466,-3.82642,-22.9477,0,-22.3457	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:7:0,4,3:0:0:4,3:139,108:-20.4657,-9.17208,-7.96796,-11.6481,0,-10.745	1/2:14:0,3,11:0:0:3,11:107,377:-39.6722,-30.9466,-30.0435,-9.07908,0,-5.76775	1/1:24:0,24,0:0:0:24,0:846,0:-76.459,-7.22472,0,-76.459,-7.22472,-76.459	1/2:158:0,73,85:0:0:73,85:2609,3052:-462.046,-249.321,-227.346,-213.082,0,-187.495	1/1:102:0,100,0:0:0:100,0:3521,0:-316.812,-30.103,0,-316.812,-30.103,-316.812	1/1:53:0,53,0:0:0:53,0:1871,0:-168.667,-15.9546,0,-168.667,-15.9546,-168.667	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:107:0,106,1:0:0:106,1:3777,36:-339.771,-31.9092,0,-336.833,-28.6119,-336.532	1/1:43:0,43,0:0:0:43,0:1533,0:-138.261,-12.9443,0,-138.261,-12.9443,-138.261	1/2:79:0,46,33:0:0:46,33:1616,1188:-228.818,-97.2946,-83.4472,-131.88,0,-121.946	1/2:39:0,15,24:0:0:15,24:533,849:-112.937,-69.5031,-64.9877,-43.7881,0,-36.5633	1/2:41:1,24,16:1:31:24,16:857,576:-114.127,-44.5601,-39.8209,-67.4281,0,-65.0983	1/2:68:0,31,35:0:0:31,35:1094,1260:-191.924,-102.843,-93.5107,-89.1102,0,-78.5742	1/1:70:0,70,0:0:0:70,0:2452,0:-220.936,-21.0721,0,-220.936,-21.0721,-220.936	1/1:147:0,145,0:0:0:145,0:5138,0:-462.258,-43.6494,0,-462.258,-43.6494,-462.258	1/1:113:0,113,0:0:0:113,0:3972,0:-357.676,-34.0164,0,-357.676,-34.0164,-357.676	1/2:98:0,33,64:0:0:33,64:1182,2292:-283.312,-186.916,-176.982,-96.3946,0,-77.1287	1/2:36:0,15,21:0:0:15,21:531,744:-104.216,-60.9627,-56.4472,-43.6074,0,-37.2857	1/1:10:0,10,0:0:0:10,0:359,0:-32.6536,-3.0103,0,-32.6536,-3.0103,-32.6536	1/1:99:0,97,0:0:0:97,0:3435,0:-309.103,-29.1999,0,-309.103,-29.1999,-309.103	1/2:68:0,41,27:0:0:41,27:1461,972:-198.755,-79.6701,-67.3279,-119.443,0,-111.315	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/2:130:0,60,70:0:0:60,70:2126,2512:-378.45,-205.26,-187.198,-173.546,0,-152.474	1/1:26:0,26,0:0:0:26,0:905,0:-81.7625,-7.8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chr06	1030788	.	A	G	237747	PASS	AB=0.571151;ABP=206.955;AC=143;AF=0.768817;AN=186;AO=9199;CIGAR=1X;DP=11215;DPB=11215;DPRA=17.4037;EPP=19692.8;EPPR=4356.82;GTI=4;LEN=1;MEANALT=1.07609;MQM=46.8294;MQMR=59.0796;NS=93;NUMALT=1;ODDS=0.622147;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=327608;QR=71000;RO=2009;RPL=4766;RPP=29.1862;RPPR=40.0032;RPR=4433;RUN=1;SAF=4799;SAP=40.5905;SAR=4400;SRF=1098;SRP=40.8073;SRR=911;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:95:0,95:0:0:95:3378:-288.002,-28.5979,0	1/1:140:0,140:0:0:140:4969:-412.168,-42.1442,0	0/1:230:99,131:99:3492:131:4634:-313.44,0,-244.422	1/1:251:0,251:0:0:251:8910:-767.593,-75.5585,0	0/1:34:7,27:7:240:27:960:-73.5114,0,-11.6996	0/1:23:5,18:5:180:18:639:-48.3601,0,-9.62652	1/1:110:0,110:0:0:110:3930:-344.132,-33.1133,0	0/1:155:52,103:52:1827:103:3662:-251.437,0,-117.649	0/1:139:48,91:48:1673:91:3255:-234,0,-108.816	0/1:118:50,68:50:1773:68:2412:-171.547,0,-124.273	0/1:96:41,55:41:1460:55:1976:-138.583,0,-102.752	1/1:187:0,187:0:0:187:6626:-554.996,-56.2926,0	0/1:142:61,81:61:2161:81:2903:-202.693,0,-151.214	0/1:120:49,71:49:1736:71:2530:-172.817,0,-120.282	1/1:161:0,161:0:0:161:5749:-498.13,-48.4658,0	0/1:128:60,68:60:2144:68:2405:-165.673,0,-154.679	1/1:94:0,94:0:0:94:3364:-277.941,-28.2968,0	0/1:64:39,24:39:1387:24:864:-52.5622,0,-105.921	1/1:55:0,55:0:0:55:1960:-164.711,-16.5567,0	1/1:551:2,549:2:72:549:19598:-1718.26,-159.167,0	0/1:180:87,92:87:3016:92:3275:-227.451,0,-217.405	1/1:90:0,89:0:0:89:3190:-278.542,-26.7917,0	0/1:119:48,71:48:1691:71:2523:-181.311,0,-116.625	0/1:69:28,41:28:988:41:1463:-106.63,0,-68.4179	1/1:85:1,84:1:36:84:2965:-250.39,-21.9893,0	1/1:263:0,262:0:0:262:9373:-817.13,-78.8699,0	0/1:184:71,113:71:2510:113:4038:-286.362,0,-170.651	1/1:65:0,65:0:0:65:2332:-197.843,-19.567,0	0/1:204:83,121:83:2959:121:4329:-314.753,0,-205.07	0/1:101:41,60:41:1432:60:2141:-147.735,0,-98.6732	1/1:122:3,119:3:100:119:4244:-349.453,-27.3952,0	0/1:5:3,2:3:93:2:72:-4.99706,0,-7.16057	1/1:6:0,6:0:0:6:203:-17.309,-1.80618,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0225	0/1:6:1,5:1:36:5:176:-12.2679,0,-1.79109	1/1:7:0,7:0:0:7:252:-19.73,-2.10721,0	0/1:239:106,133:106:3796:133:4755:-343.149,0,-269.859	1/1:92:1,91:1:36:91:3267:-273.788,-24.0965,0	1/1:79:0,78:0:0:78:2771:-227.919,-23.4803,0	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	1/1:189:3,186:3:108:186:6640:-555.789,-46.9588,0	1/1:56:0,56:0:0:56:1981:-173.939,-16.8577,0	0/1:163:62,101:62:2216:101:3608:-256.601,0,-150.586	0/1:121:59,62:59:2065:62:2219:-152.414,0,-149.68	0/1:113:55,58:55:1956:58:2047:-143.105,0,-142.24	0/1:71:27,44:27:933:44:1571:-117.549,0,-62.9072	1/1:140:0,140:0:0:140:4981:-416.776,-42.1442,0	1/1:214:0,214:0:0:214:7619:-651.359,-64.4204,0	1/1:128:0,128:0:0:128:4573:-395.834,-38.5318,0	0/1:149:62,87:62:2197:87:3085:-223.654,0,-153.082	0/1:74:26,48:26:916:48:1713:-128.71,0,-60.477	1/1:5:0,5:0:0:5:165:-14.9319,-1.50515,0	1/1:181:0,181:0:0:181:6450:-530.801,-54.4864,0	0/1:55:18,37:18:648:37:1306:-96.318,0,-42.0952	0/1:4:3,1:3:108:1:36:-1.91952,0,-8.86665	0/1:129:52,77:52:1844:77:2733:-191.734,0,-127.298	1/1:72:0,71:0:0:71:2539:-220.811,-21.3731,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:7:0,7:0:0:7:252:-22.5499,-2.10721,0	1/1:112:0,112:0:0:112:3998:-338.943,-33.7154,0	1/1:116:1,115:1:32:115:4086:-350.59,-31.7202,0	.:.:.:.:.:.:.:.	1/1:153:0,153:0:0:153:5447:-476.155,-46.0576,0	1/1:152:1,151:1:36:151:5416:-462.997,-42.1583,0	1/1:96:0,96:0:0:96:3443:-294.133,-28.8989,0	1/1:108:0,108:0:0:108:3842:-331.929,-32.5112,0	1/1:175:0,175:0:0:175:6246:-532.155,-52.6803,0	1/1:156:0,156:0:0:156:5553:-476.959,-46.9607,0	1/1:66:0,66:0:0:66:2358:-195.828,-19.868,0	1/1:88:0,88:0:0:88:3123:-268.24,-26.4906,0	1/1:77:0,77:0:0:77:2740:-238.575,-23.1793,0	0/1:27:14,13:14:500:13:451:-31.3057,0,-37.2006	1/1:111:0,111:0:0:111:3946:-330.742,-33.4143,0	0/1:126:53,73:53:1850:73:2583:-183.355,0,-128.605	0/1:236:88,148:88:3070:148:5259:-365.045,0,-205.343	0/1:216:98,118:98:3457:118:4226:-299.259,0,-246.288	1/1:130:0,130:0:0:130:4629:-380.377,-39.1339,0	1/1:185:1,184:1:36:184:6530:-548.146,-52.0933,0	0/1:6:3,3:3:108:3:108:-7.383,0,-8.26711	1/1:210:1,209:1:36:209:7418:-632.263,-59.618,0	1/1:164:0,164:0:0:164:5822:-484.293,-49.3689,0	0/1:212:70,142:70:2452:142:5017:-365.421,0,-157.042	1/1:88:1,87:1:36:87:3124:-263.134,-22.8924,0	1/1:131:0,131:0:0:131:4658:-398.812,-39.4349,0	0/1:129:73,56:73:2584:56:1968:-132.061,0,-193.716	1/1:226:0,226:0:0:226:8030:-694.624,-68.0328,0	0/1:46:21,25:21:743:25:888:-61.8944,0,-53.3392	1/1:117:0,117:0:0:117:4156:-350.377,-35.2205,0	0/1:120:57,63:57:2019:63:2230:-150.271,0,-145.483	1/1:61:0,61:0:0:61:2184:-183.393,-18.3628,0	0/1:128:74,54:74:2632:54:1910:-124.715,0,-198.388	0/1:153:92,61:92:3292:61:2188:-145.132,0,-250.4	1/1:189:0,189:0:0:189:6768:-580.816,-56.8947,0	1/1:213:0,212:0:0:212:7508:-651.37,-63.8184,0
chr06	1045709	.	G	A	173185	PASS	AB=0.501523;ABP=3.1029;AC=143;AF=0.760638;AN=188;AO=8226;CIGAR=1X;DP=10529;DPB=10529;DPRA=0;EPP=17865.5;EPPR=5003.91;GTI=1;LEN=1;MEANALT=1;MQM=59.9988;MQMR=60;NS=94;NUMALT=1;ODDS=0.871835;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=291271;QR=80223;RO=2303;RPL=0;RPP=17865.5;RPPR=5003.91;RPR=8226;RUN=1;SAF=0;SAP=17865.5;SAR=8226;SRF=0;SRP=5003.91;SRR=2303;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1321:-119.187,-11.4391,0	1/1:160:0,160:0:0:160:5683:-511.591,-48.1648,0	0/1:126:48,78:48:1685:78:2768:-211.43,0,-114.004	1/1:194:0,194:0:0:194:6896:-620.71,-58.3998,0	0/1:94:33,61:33:1157:61:2148:-165.289,0,-76.1376	0/1:56:23,33:23:815:33:1176:-89.2901,0,-56.8131	1/1:166:1,165:1:36:165:5826:-520.862,-46.3727,0	0/1:169:82,87:82:2759:87:3086:-227.094,0,-197.673	0/1:85:46,39:46:1599:39:1367:-97.7374,0,-118.608	0/1:139:53,86:53:1831:86:3022:-230.368,0,-123.222	0/1:65:34,31:34:1178:31:1103:-80.0129,0,-86.7558	1/1:79:0,79:0:0:79:2791:-251.429,-23.7814,0	0/1:46:25,21:25:870:21:751:-54.0687,0,-64.7672	0/1:98:50,48:50:1749:48:1690:-122.884,0,-128.191	1/1:66:0,66:0:0:66:2313:-208.43,-19.868,0	0/1:43:16,27:16:546:27:964:-74.1325,0,-36.5175	1/1:85:0,85:0:0:85:3027:-272.661,-25.5876,0	0/1:51:24,27:24:832:27:968:-72.0848,0,-59.8442	1/1:36:0,36:0:0:36:1283:-115.773,-10.8371,0	1/1:241:0,241:0:0:241:8589:-773.008,-72.5482,0	0/1:199:123,76:123:4300:76:2680:-181.54,0,-327.275	1/1:153:0,153:0:0:153:5438:-489.551,-46.0576,0	0/1:34:16,18:16:572:18:639:-47.6032,0,-41.5784	0/1:147:59,88:59:2053:88:3103:-235.232,0,-140.787	1/1:80:0,80:0:0:80:2823:-254.308,-24.0824,0	1/1:358:0,358:0:0:358:12702:-1143.01,-107.769,0	0/1:315:156,159:156:5437:159:5672:-415.775,0,-394.641	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:336:169,167:169:5927:167:5928:-432.484,0,-432.397	0/1:223:112,111:112:3885:111:3964:-289.822,0,-282.714	1/1:124:0,124:0:0:124:4397:-395.903,-37.3277,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:11:0,11:0:0:11:372:-33.8038,-3.31133,0	0/1:206:106,100:106:3629:100:3519:-254.91,0,-264.806	1/1:268:0,268:0:0:268:9491:-854.156,-80.676,0	1/1:81:0,81:0:0:81:2821:-254.127,-24.3834,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:180:1,179:1:36:179:6361:-568.984,-50.5871,0	1/1:41:0,41:0:0:41:1429:-128.901,-12.3422,0	0/1:228:144,84:144:4973:84:2962:-198.177,0,-379.093	0/1:82:42,40:42:1456:40:1416:-103.053,0,-106.647	0/1:40:15,25:15:517:25:880:-67.4765,0,-34.8134	0/1:188:103,85:103:3631:85:3008:-214.358,0,-270.401	1/1:155:1,154:1:36:154:5442:-486.31,-43.0614,0	1/1:167:0,167:0:0:167:5934:-534.171,-50.272,0	1/1:152:0,152:0:0:152:5376:-483.976,-45.7566,0	0/1:185:97,88:97:3436:88:3143:-227.405,0,-253.763	0/1:164:82,82:82:2887:82:2920:-213.666,0,-210.697	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:130:0,130:0:0:130:4606:-414.705,-39.1339,0	0/1:90:53,37:53:1851:37:1324:-92.3694,0,-139.774	0/1:20:14,6:14:480:6:216:-13.7699,0,-37.5032	0/1:135:67,68:67:2333:68:2368:-172.734,0,-169.589	1/1:23:0,23:0:0:23:804:-72.6766,-6.92369,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:21:17,4:17:603:4:144:-6.99199,0,-48.2779	1/1:80:0,80:0:0:80:2852:-256.919,-24.0824,0	1/1:99:0,99:0:0:99:3490:-314.312,-29.802,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:216:0,216:0:0:216:7645:-688.092,-65.0225,0	1/1:324:2,322:2:72:322:11425:-1021.3,-90.697,0	1/1:74:0,74:0:0:74:2627:-236.677,-22.2762,0	1/1:78:0,78:0:0:78:2744:-247.203,-23.4803,0	1/1:186:2,184:2:72:184:6475:-576.004,-49.1549,0	1/1:140:3,137:3:108:137:4857:-427.209,-32.069,0	1/1:37:0,37:0:0:37:1307:-117.93,-11.1381,0	1/1:108:0,108:0:0:108:3833:-345.168,-32.5112,0	1/1:94:0,94:0:0:94:3297:-296.951,-28.2968,0	0/1:15:9,6:9:316:6:216:-15.2751,0,-24.2634	1/1:238:0,238:0:0:238:8352:-751.698,-71.6451,0	0/1:54:25,29:25:845:29:1044:-78.0192,0,-60.1013	0/1:169:90,79:90:3167:79:2780:-199.564,0,-234.381	0/1:161:77,84:77:2702:84:2967:-218.796,0,-194.957	1/1:160:0,160:0:0:160:5667:-510.151,-48.1648,0	1/1:97:1,96:1:36:96:3421:-304.506,-25.6016,0	0/1:6:5,1:5:165:1:36:-1.79209,0,-13.3674	1/1:121:0,121:0:0:121:4256:-383.22,-36.4246,0	1/1:121:0,121:0:0:121:4254:-383.04,-36.4246,0	0/1:205:89,116:89:3111:116:4139:-310.984,0,-218.505	1/1:116:0,116:0:0:116:4089:-368.202,-34.9195,0	1/1:59:0,59:0:0:59:2068:-186.389,-17.7608,0	0/1:93:40,53:40:1407:53:1861:-139.769,0,-98.9307	1/1:179:0,179:0:0:179:6335:-570.251,-53.8844,0	0/1:38:25,13:25:863:13:468:-31.0205,0,-66.545	1/1:59:0,59:0:0:59:2105:-189.72,-17.7608,0	0/1:63:26,37:26:907:37:1311:-99.326,0,-62.9795	1/1:55:0,55:0:0:55:1950:-175.775,-16.5567,0	0/1:98:38,60:38:1320:60:2099:-159.678,0,-89.5957	0/1:74:40,34:40:1353:34:1211:-87.0193,0,-99.7851	1/1:146:0,146:0:0:146:5204:-468.499,-43.9504,0	1/1:87:1,86:1:36:86:3084:-274.189,-22.5913,0
chr06	1046887	.	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chr06	1061462	.	G	A	126642	PASS	AB=0.464837;ABP=40.5771;AC=144;AF=0.765957;AN=188;AO=6031;CIGAR=1X;DP=7920;DPB=7920;DPRA=0;EPP=13090.5;EPPR=3831.4;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.7856;MQMR=59.922;NS=94;NUMALT=1;ODDS=7.43445;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213752;QR=67464;RO=1885;RPL=1;RPP=13090.5;RPPR=3831.4;RPR=6030;RUN=1;SAF=6031;SAP=13099.2;SAR=0;SRF=1885;SRP=4096.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1108:-100.029,-9.33193,0	1/1:109:0,109:0:0:109:3856:-347.234,-32.8123,0	0/1:155:112,43:112:4004:43:1498:-88.4494,0,-313.887	1/1:172:0,171:0:0:171:6092:-547.947,-51.4761,0	0/1:107:53,54:53:1895:54:1928:-141.586,0,-138.616	0/1:46:18,28:18:648:28:1004:-76.8285,0,-44.8045	1/1:145:1,144:1:36:144:5119:-457.253,-40.0511,0	0/1:143:73,70:73:2615:70:2508:-182.92,0,-192.55	0/1:107:46,61:46:1656:61:2168:-163.175,0,-117.118	0/1:76:37,39:37:1332:39:1392:-102.624,0,-97.3041	0/1:25:10,15:10:360:15:528:-40.3256,0,-25.2186	1/1:24:0,24:0:0:24:854:-77.1785,-7.22472,0	0/1:43:29,14:29:1036:14:500:-32.3919,0,-80.6096	0/1:35:20,15:20:716:15:532:-37.6752,0,-54.2317	1/1:24:0,24:0:0:24:854:-77.1803,-7.22472,0	0/1:32:15,17:15:536:17:592:-43.973,0,-38.9335	1/1:28:0,28:0:0:28:996:-89.954,-8.42884,0	0/1:24:14,10:14:500:10:360:-25.5187,0,-38.1115	1/1:15:0,15:0:0:15:540:-48.9342,-4.51545,0	1/1:216:1,215:1:36:215:7534:-674.369,-61.4242,0	0/1:102:56,46:56:2008:46:1640:-117.183,0,-150.288	1/1:128:0,127:0:0:127:4513:-405.578,-38.2308,0	0/1:100:51,49:51:1827:49:1736:-126.417,0,-134.584	0/1:107:68,39:68:2422:39:1385:-92.7357,0,-186.025	1/1:106:0,106:0:0:106:3769:-339.389,-31.9092,0	1/1:238:1,237:1:36:237:8388:-751.192,-68.0469,0	0/1:153:87,66:87:3116:66:2336:-164.44,0,-234.609	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:290:153,137:153:5496:137:4853:-349.576,0,-407.196	0/1:150:79,71:79:2823:71:2508:-180.747,0,-209.153	1/1:128:1,127:1:36:127:4522:-403.544,-34.9336,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:27:0,27:0:0:27:957:-86.443,-8.12781,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:15:0,15:0:0:15:536:-48.5739,-4.51545,0	1/1:13:0,13:0:0:13:456:-41.3723,-3.91339,0	0/1:122:66,56:66:2368:56:2000:-143.537,0,-176.65	1/1:199:0,199:0:0:199:7009:-630.844,-59.905,0	1/1:20:0,20:0:0:20:720:-65.1279,-6.0206,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	1/1:137:0,136:0:0:136:4834:-434.747,-40.9401,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:126:61,65:61:2180:65:2309:-170.138,0,-158.536	0/1:30:13,17:13:464:17:608:-46.0188,0,-33.0666	0/1:27:10,17:10:352:17:612:-47.2856,0,-23.8904	0/1:120:62,58:62:2220:58:2057:-149.254,0,-163.941	1/1:125:0,125:0:0:125:4432:-399.051,-37.6288,0	1/1:195:0,195:0:0:195:6882:-619.37,-58.7009,0	1/1:141:1,140:1:36:140:4917:-439.088,-38.847,0	0/1:111:58,53:58:2084:53:1869:-135.072,0,-154.416	0/1:187:114,73:114:4087:73:2583:-176.426,0,-311.674	1/1:14:0,14:0:0:14:488:-44.2494,-4.21442,0	1/1:162:0,162:0:0:162:5766:-519.046,-48.7669,0	0/1:72:41,31:41:1468:31:1108:-78.3462,0,-110.735	0/1:24:7,17:7:252:17:580:-45.297,0,-15.8042	0/1:94:52,42:52:1868:42:1479:-105.105,0,-140.102	1/1:79:0,79:0:0:79:2772:-249.717,-23.7814,0	0/1:19:5,14:5:180:14:500:-39.5144,0,-10.8325	0/1:24:10,14:10:360:14:496:-37.7495,0,-25.5196	1/1:78:0,78:0:0:78:2753:-247.941,-23.4803,0	1/1:80:2,78:2:72:78:2792:-244.682,-17.2457,0	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	1/1:172:0,172:0:0:172:6104:-549.321,-51.7772,0	1/1:152:0,152:0:0:152:5378:-484.151,-45.7566,0	1/1:72:0,72:0:0:72:2560:-230.649,-21.6742,0	1/1:73:0,73:0:0:73:2556:-230.289,-21.9752,0	1/1:163:0,163:0:0:163:5749:-517.523,-49.0679,0	1/1:146:6,140:6:212:140:4920:-423.517,-24.5256,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:64:0,64:0:0:64:2280:-205.46,-19.2659,0	1/1:60:0,60:0:0:60:2140:-192.825,-18.0618,0	0/1:24:17,7:17:608:7:248:-15.4395,0,-47.8273	1/1:144:0,144:0:0:144:5097:-458.867,-43.3483,0	0/1:64:33,31:33:1184:31:1100:-80.0425,0,-87.6024	0/1:155:60,95:60:2125:95:3374:-257.211,0,-144.7	0/1:141:84,57:84:3004:57:2025:-140.075,0,-228.146	1/1:112:0,112:0:0:112:3984:-358.679,-33.7154,0	1/1:54:0,54:0:0:54:1896:-170.776,-16.2556,0	0/1:20:14,6:14:504:6:212:-13.4042,0,-39.6775	1/1:83:0,83:0:0:83:2937:-264.559,-24.9855,0	1/1:100:0,100:0:0:100:3559:-320.509,-30.103,0	0/1:223:121,102:121:4313:102:3625:-259.318,0,-321.211	1/1:56:1,55:1:36:55:1944:-171.638,-13.2594,0	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	0/1:35:19,16:19:680:16:559:-40.1012,0,-50.9931	1/1:80:0,80:0:0:80:2864:-257.988,-24.0824,0	0/1:24:15,9:15:540:9:316:-21.5541,0,-41.7118	1/1:31:0,31:0:0:31:1100:-99.3081,-9.33193,0	0/1:47:20,26:20:702:26:924:-69.2703,0,-49.2957	1/1:11:0,11:0:0:11:396:-35.9818,-3.31133,0	0/1:50:30,20:30:1072:20:700:-48.272,0,-81.741	0/1:30:21,9:21:747:9:320:-20.1105,0,-58.5234	1/1:96:0,96:0:0:96:3436:-309.448,-28.8989,0	1/1:43:0,43:0:0:43:1538:-138.684,-12.9443,0
chr06	1065245	.	G	T	15701.9	PASS	AB=0.466802;ABP=54.9142;AC=47;AF=0.252688;AN=186;AO=2552;CIGAR=1X;DP=12450;DPB=12450;DPRA=0.970311;EPP=5544.61;EPPR=21448.5;GTI=6;LEN=1;MEANALT=1.01887;MQM=24.6203;MQMR=35.0179;NS=93;NUMALT=1;ODDS=0.835842;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91518;QR=353570;RO=9892;RPL=2551;RPP=5535.93;RPPR=21448.5;RPR=1;RUN=1;SAF=2551;SAP=5535.93;SAR=1;SRF=9892;SRP=21483.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1780:0:0:0,-15.0515,-138.959	0/0:292:292,0:292:10460:0:0:0,-87.9008,-804.373	0/1:225:123,102:123:4394:102:3641:-131.295,0,-272.756	0/0:208:207,1:207:7403:1:36:0,-60.0555,-613.029	0/1:131:66,65:66:2360:65:2332:-99.072,0,-146.834	0/1:115:61,54:61:2174:54:1936:-71.1328,0,-132.81	0/0:164:164,0:164:5868:0:0:0,-49.3689,-483.508	0/1:174:99,75:99:3560:75:2688:-94.4373,0,-218.444	0/1:107:56,51:56:1984:51:1824:-67.6323,0,-120.122	0/1:121:59,62:59:2097:62:2232:-105.76,0,-136.499	0/1:82:39,43:39:1396:43:1527:-73.6746,0,-89.1354	0/0:101:101,0:101:3612:0:0:0,-30.404,-277.005	0/1:80:42,38:42:1492:38:1360:-50.5809,0,-90.8849	0/1:106:55,51:55:1953:51:1820:-76.6239,0,-125.107	0/0:94:94,0:94:3368:0:0:0,-28.2968,-277.343	0/1:79:45,34:45:1611:34:1224:-47.3546,0,-104.308	0/0:64:63,1:63:2264:1:36:0,-17.0828,-174.727	0/1:63:32,31:32:1148:31:1108:-42.1194,0,-68.5413	0/0:43:42,0:42:1493:0:0:0,-12.6433,-114.717	0/0:395:394,1:394:14025:1:36:0,-116.348,-1154.54	0/1:187:94,93:94:3350:93:3336:-140.272,0,-210.78	0/0:142:142,0:142:5081:0:0:0,-42.7463,-423.656	0/1:137:78,56:78:2804:56:2016:-87.7922,0,-192.818	0/1:191:111,80:111:3967:80:2868:-112.159,0,-258.454	0/0:134:134,0:134:4778:0:0:0,-40.338,-385.092	0/0:418:418,0:418:14922:0:0:0,-125.831,-1261.11	0/1:296:141,155:141:5051:155:5563:-238.248,0,-316.693	0/0:37:37,0:37:1308:0:0:0,-11.1381,-104.905	0/1:420:224,196:224:7987:196:7040:-339.063,0,-546.007	0/1:185:104,81:104:3724:81:2889:-115.19,0,-241.236	0/0:168:162,6:162:5812:6:208:0,-36.7722,-463.535	0/1:9:1,8:1:36:8:284:-14.2479,0,-0.536889	0/0:20:19,1:19:669:1:36:0,-3.64707,-52.4076	.:.:.:.:.:.:.:.	0/1:4:2,2:2:72:2:72:-2.94387,0,-4.73079	0/0:8:8,0:8:284:0:0:0,-2.40824,-22.3646	0/1:254:137,117:137:4901:117:4196:-200.367,0,-338.262	0/0:246:246,0:246:8809:0:0:0,-74.0534,-704.545	0/0:64:64,0:64:2296:0:0:0,-19.2659,-173.607	1/1:1:0,1:0:0:1:36:-2.37353,-0.30103,0	0/0:245:243,2:243:8720:2:72:0,-69.2426,-694.205	0/0:41:41,0:41:1472:0:0:0,-12.3422,-115.761	0/1:190:107,83:107:3821:83:2976:-119.04,0,-249.431	0/1:83:46,37:46:1637:37:1332:-60.4753,0,-109.147	0/1:65:31,34:31:1100:34:1224:-57.9655,0,-71.6102	0/1:112:56,56:56:1982:56:2012:-99.4771,0,-132.627	0/0:223:223,0:223:7975:0:0:0,-67.1297,-615.284	0/0:107:107,0:107:3816:0:0:0,-32.2102,-314.281	0/0:158:158,0:158:5619:0:0:0,-47.5627,-461.045	0/1:214:111,103:111:3980:103:3691:-171.801,0,-263.958	0/1:232:121,111:121:4321:111:3980:-193.769,0,-292.678	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.10554	0/0:217:217,0:217:7788:0:0:0,-65.3235,-602.097	0/1:40:34,6:34:1224:6:216:-2.5261,0,-91.3637	0/1:6:5,1:5:180:1:36:-0.376971,0,-12.5626	0/1:177:89,88:89:3188:88:3160:-132.801,0,-198.281	0/0:77:77,0:77:2764:0:0:0,-23.1793,-228.536	0/1:5:3,2:3:108:2:72:-3.52719,0,-8.08093	1/1:1:0,1:0:0:1:36:-2.6486,-0.30103,0	0/0:148:148,0:148:5264:0:0:0,-44.5524,-421.68	0/0:146:146,0:146:5236:0:0:0,-43.9504,-430.603	1/1:1:0,1:0:0:1:36:-2.55871,-0.30103,0	0/0:216:216,0:216:7740:0:0:0,-65.0225,-655.644	0/0:315:315,0:315:11276:0:0:0,-94.8244,-926.898	0/0:114:114,0:114:4069:0:0:0,-34.3174,-325.404	0/0:108:108,0:108:3852:0:0:0,-32.5112,-318.841	0/0:266:265,1:265:9448:1:36:0,-77.5153,-776.045	0/0:176:175,0:175:6277:0:0:0,-52.6802,-516.973	0/0:41:41,0:41:1468:0:0:0,-12.3422,-113.353	0/0:161:161,0:161:5767:0:0:0,-48.4658,-443.785	0/0:73:71,2:71:2522:2:72:0,-16.9428,-207.728	0/1:29:12,17:12:432:17:612:-30.5065,0,-27.6523	0/0:155:154,0:154:5490:0:0:0,-46.3586,-421.87	0/1:65:33,32:33:1176:32:1148:-43.3291,0,-71.5844	0/1:203:117,86:117:4184:86:3084:-121.71,0,-272.83	0/1:213:104,109:104:3728:109:3916:-186.878,0,-240.463	0/0:76:76,0:76:2720:0:0:0,-22.8783,-204.495	0/0:139:136,3:136:4865:3:108:0,-35.7303,-372.052	0/1:6:3,3:3:108:3:108:-4.30664,0,-6.94001	0/0:174:174,0:174:6230:0:0:0,-52.3792,-492.646	0/0:193:193,0:193:6890:0:0:0,-58.0988,-530.019	0/1:364:222,142:222:7926:142:5099:-217.306,0,-539.336	0/0:113:113,0:113:4039:0:0:0,-34.0164,-333.321	0/0:77:77,0:77:2760:0:0:0,-23.1793,-223.867	0/1:119:71,48:71:2536:48:1716:-73.5448,0,-173.505	0/0:163:163,0:163:5832:0:0:0,-49.0679,-479.383	0/1:50:28,22:28:1004:22:792:-28.0426,0,-62.1963	0/0:96:96,0:96:3423:0:0:0,-28.8989,-265.233	0/1:105:52,53:52:1855:53:1908:-72.5716,0,-109.621	0/0:59:59,0:59:2108:0:0:0,-17.7608,-167.85	0/1:87:39,48:39:1387:48:1716:-75.7936,0,-85.2596	0/1:91:35,56:35:1256:56:2016:-101.307,0,-76.2113	0/0:169:169,0:169:6039:0:0:0,-50.8741,-493.232	0/0:129:129,0:129:4607:0:0:0,-38.8329,-382.661
chr06	1065279	.	C	A	139205	PASS	AB=0.526123;ABP=25.7007;AC=143;AF=0.760638;AN=188;AO=6756;CIGAR=1X;DP=8582;DPB=8582;DPRA=46.6196;EPP=13201.1;EPPR=3950.75;GTI=5;LEN=1;MEANALT=1.06522;MQM=39.3422;MQMR=59.8553;NS=94;NUMALT=1;ODDS=0.241956;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241454;QR=64671;RO=1818;RPL=175;RPP=13192.8;RPPR=3950.75;RPR=6581;RUN=1;SAF=1;SAP=14664.8;SAR=6755;SRF=0;SRP=3950.75;SRR=1818;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:383:-32.2195,-3.31133,0	1/1:113:0,113:0:0:113:4023:-332.518,-34.0164,0	0/1:84:32,52:32:1129:52:1868:-128.895,0,-76.6279	1/1:139:0,139:0:0:139:4959:-426.656,-41.8432,0	0/1:100:50,50:50:1788:50:1796:-122.303,0,-131.099	0/1:40:15,25:15:536:25:896:-62.2957,0,-36.5336	1/1:82:0,82:0:0:82:2873:-246.539,-24.6845,0	0/1:87:51,36:51:1816:36:1296:-78.8441,0,-137.53	0/1:101:44,57:44:1546:57:2048:-137.275,0,-109.019	0/1:66:25,41:25:883:41:1468:-106.667,0,-59.9194	0/1:36:14,22:14:500:22:792:-57.8468,0,-34.4945	1/1:81:0,81:0:0:81:2887:-238.989,-24.3834,0	0/1:65:25,40:25:896:40:1419:-98.8616,0,-61.3903	0/1:43:19,24:19:684:24:830:-58.4529,0,-48.8707	1/1:80:0,80:0:0:80:2850:-245.361,-24.0824,0	0/1:53:20,33:20:716:33:1184:-84.0713,0,-48.8131	1/1:57:0,57:0:0:57:2027:-168.084,-17.1587,0	0/1:62:22,40:22:775:40:1432:-98.5566,0,-51.4073	1/1:41:0,41:0:0:41:1476:-121.451,-12.3422,0	1/1:216:0,216:0:0:216:7742:-665.23,-65.0225,0	0/1:191:87,104:87:3037:104:3691:-256.259,0,-216.053	1/1:103:0,103:0:0:103:3660:-319.852,-31.0061,0	0/1:60:32,28:32:1144:28:1000:-66.9378,0,-85.2077	0/1:56:26,30:26:932:30:1063:-73.0694,0,-67.3408	1/1:117:0,117:0:0:117:4187:-353.849,-35.2205,0	1/1:277:0,277:0:0:277:9930:-865.577,-83.3853,0	0/1:241:120,121:120:4285:121:4314:-293.517,0,-313.262	1/1:58:0,58:0:0:58:2068:-174.268,-17.4597,0	0/1:501:247,254:247:8818:254:9079:-642.554,0,-642.791	0/1:71:29,42:29:1006:42:1504:-105.963,0,-69.4719	1/1:91:0,91:0:0:91:3268:-280.196,-27.3937,0	0/1:2:1,1:1:36:1:36:-2.78554,0,-2.99621	1/1:12:0,12:0:0:12:432:-36.9248,-3.61236,0	1/1:4:0,4:0:0:4:135:-11.6141,-1.20412,0	0/1:19:4,14:4:144:14:482:-34.3228,0,-7.53539	1/1:7:0,7:0:0:7:252:-21.3874,-2.10721,0	0/1:198:88,109:88:3118:109:3884:-279.121,0,-221.143	1/1:185:0,185:0:0:185:6610:-556.414,-55.6906,0	1/1:59:0,59:0:0:59:2107:-174.029,-17.7608,0	0/1:3:1,2:1:36:2:72:-5.53335,0,-2.69474	1/1:102:0,102:0:0:102:3654:-309.022,-30.7051,0	1/1:29:0,29:0:0:29:1032:-87.593,-8.72987,0	0/1:101:60,41:60:2140:41:1476:-94.9696,0,-162.453	0/1:69:37,32:37:1328:32:1131:-77.3937,0,-99.0506	0/1:84:30,54:30:1059:54:1931:-141.322,0,-70.3293	0/1:58:22,36:22:792:36:1288:-94.8234,0,-54.1459	1/1:115:0,115:0:0:115:4127:-340.244,-34.6185,0	1/1:166:3,163:3:108:163:5822:-493.507,-39.8958,0	1/1:125:0,125:0:0:125:4491:-384.962,-37.6288,0	0/1:109:46,63:46:1643:63:2260:-161.471,0,-115.345	0/1:172:84,88:84:2977:88:3149:-223.053,0,-216.378	1/1:5:0,5:0:0:5:180:-15.8907,-1.50515,0	1/1:103:0,103:0:0:103:3700:-306.28,-31.0061,0	0/1:19:10,9:10:360:9:315:-22.3227,0,-27.0247	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:116:55,61:55:1968:61:2183:-149.44,0,-142.473	1/1:64:0,63:0:0:63:2238:-189.291,-18.9649,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:3,1:3:108:1:36:-2.29858,0,-8.87105	1/1:62:0,62:0:0:62:2232:-188.672,-18.6639,0	1/1:134:0,134:0:0:134:4750:-410.264,-40.338,0	1/1:6:0,6:0:0:6:216:-18.9997,-1.80618,0	1/1:284:0,284:0:0:284:10189:-884.543,-85.4925,0	1/1:88:0,88:0:0:88:3149:-270.052,-26.4906,0	1/1:44:0,44:0:0:44:1584:-134.201,-13.2453,0	1/1:70:0,70:0:0:70:2516:-216.05,-21.0721,0	1/1:220:0,220:0:0:220:7888:-675.158,-66.2266,0	1/1:78:0,78:0:0:78:2795:-241.595,-23.4803,0	1/1:21:0,21:0:0:21:756:-64.3644,-6.32163,0	1/1:77:0,76:0:0:76:2723:-224.266,-22.8783,0	1/1:71:0,71:0:0:71:2513:-220.889,-21.3731,0	0/1:13:9,4:9:324:4:144:-9.26723,0,-25.5925	1/1:82:0,82:0:0:82:2917:-237.253,-24.6845,0	0/1:68:42,26:42:1489:26:924:-56.1829,0,-113.831	0/1:128:50,77:50:1754:77:2768:-196.643,0,-119.696	0/1:166:92,74:92:3280:74:2650:-176.801,0,-245.443	1/1:102:0,102:0:0:102:3603:-297.187,-30.7051,0	1/1:111:1,110:1:36:110:3952:-321.831,-29.8161,0	0/1:9:6,3:6:216:3:108:-6.528,0,-17.0812	1/1:147:0,147:0:0:147:5252:-444.95,-44.2514,0	1/1:108:0,108:0:0:108:3860:-314.497,-32.5112,0	0/1:321:172,149:172:6120:149:5328:-361.189,0,-453.516	1/1:91:0,91:0:0:91:3263:-279.335,-27.3937,0	1/1:67:0,67:0:0:67:2395:-207.875,-20.169,0	0/1:96:42,54:42:1496:54:1936:-136.196,0,-106.036	1/1:146:1,145:1:36:145:5174:-442.432,-40.3521,0	0/1:43:14,29:14:504:29:1031:-72.952,0,-32.7538	1/1:91:0,91:0:0:91:3263:-267.742,-27.3937,0	0/1:59:33,26:33:1184:26:936:-57.4862,0,-89.106	1/1:24:1,23:1:32:23:820:-65.1236,-4.02541,0	0/1:53:20,33:20:712:33:1176:-83.3602,0,-48.4513	0/1:61:29,29:29:1036:29:1027:-70.5917,0,-75.7476	1/1:80:0,80:0:0:80:2861:-245.142,-24.0824,0	1/1:104:0,104:0:0:104:3719:-322.339,-31.3071,0
chr06	1067090	.	A	G	25032.3	PASS	AB=0.509347;ABP=5.32421;AC=41;AF=0.22043;AN=186;AO=1567;CIGAR=1X;DP=6965;DPB=6965;DPRA=1.14599;EPP=3405.71;EPPR=11713.8;GTI=1;LEN=1;MEANALT=1.02;MQM=59.9872;MQMR=59.998;NS=93;NUMALT=1;ODDS=0.276588;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54663;QR=191069;RO=5397;RPL=0;RPP=3405.71;RPPR=11713.8;RPR=1567;RUN=1;SAF=0;SAP=3405.71;SAR=1567;SRF=0;SRP=11722.4;SRR=5397;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:738:0:0:0,-6.32163,-66.7414	0/0:138:138,0:138:4909:0:0:0,-41.5421,-441.963	0/1:104:50,54:50:1766:54:1895:-139.518,0,-127.915	0/0:197:196,1:196:6995:1:36:0,-55.7046,-626.015	0/1:15:10,5:10:356:5:180:-12.0366,0,-27.8658	0/1:49:20,29:20:707:29:1024:-77.7221,0,-49.2041	0/0:125:125,0:125:4426:0:0:0,-37.6287,-398.513	0/1:78:35,43:35:1235:43:1501:-111.902,0,-87.9731	0/1:52:24,28:24:847:28:992:-73.9408,0,-60.8952	0/1:97:43,54:43:1539:54:1891:-141.22,0,-109.602	0/1:25:14,11:14:487:11:388:-27.7316,0,-36.6334	0/0:44:44,0:44:1524:0:0:0,-13.2453,-137.449	0/1:53:27,26:27:963:26:916:-66.8019,0,-71.0313	0/1:33:13,20:13:456:20:686:-52.1243,0,-31.4392	0/0:45:45,0:45:1576:0:0:0,-13.5463,-142.128	0/1:25:15,10:15:519:10:360:-25.2186,0,-39.511	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:43:18,25:18:640:25:875:-66.1218,0,-44.985	0/0:21:21,0:21:729:0:0:0,-6.32163,-65.9287	0/0:183:182,1:182:6452:1:36:0,-51.4902,-577.174	0/1:104:36,68:36:1248:68:2367:-181.981,0,-81.312	0/0:65:65,0:65:2287:0:0:0,-19.5669,-206.09	0/1:78:31,46:31:1107:46:1602:-120.928,0,-76.4011	0/1:88:49,39:49:1733:39:1400:-99.8085,0,-129.762	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/0:227:227,0:227:8058:0:0:0,-68.3338,-725.245	0/1:192:107,85:107:3778:85:2985:-211.086,0,-282.422	0/0:40:40,0:40:1390:0:0:0,-12.0412,-125.393	0/1:254:122,132:122:4338:132:4632:-340.586,0,-314.135	0/1:115:57,58:57:2018:58:2036:-148.892,0,-147.273	0/0:113:111,2:111:3942:2:68:0,-27.5587,-348.516	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:133:70,63:70:2499:63:2167:-155.259,0,-185.125	0/0:113:113,0:113:4015:0:0:0,-34.0164,-361.541	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	.:.:.:.:.:.:.:.	0/0:71:69,2:69:2449:2:68:0,-14.9154,-214.206	0/0:27:27,0:27:940:0:0:0,-8.12781,-84.9108	0/1:65:27,38:27:959:38:1305:-98.1787,0,-67.0584	0/1:71:27,44:27:955:44:1538:-117.337,0,-64.8917	0/1:33:16,17:16:549:17:542:-39.1502,0,-39.7985	0/1:69:27,42:27:951:42:1473:-112.091,0,-65.1332	0/0:68:67,1:67:2360:1:36:0,-16.8718,-209.059	0/0:126:126,0:126:4490:0:0:0,-37.9298,-404.27	0/0:98:98,0:98:3486:0:0:0,-29.5009,-313.952	0/1:111:57,54:57:2040:54:1873:-135.43,0,-150.458	0/1:144:83,61:83:2937:61:2108:-146.639,0,-221.216	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:104:104,0:104:3663:0:0:0,-31.3071,-329.876	0/1:62:30,32:30:1040:32:1122:-82.6224,0,-75.2427	0/1:6:5,1:5:180:1:32:-1.39313,0,-14.7459	0/1:90:45,45:45:1581:45:1568:-114.315,0,-115.485	0/0:35:34,1:34:1209:1:36:0,-6.93777,-105.511	0/1:11:3,8:3:104:8:284:-22.592,0,-6.39148	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/0:63:63,0:63:2226:0:0:0,-18.9649,-200.604	0/0:80:80,0:80:2828:0:0:0,-24.0824,-254.759	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:304:304,0:304:10769:0:0:0,-91.5131,-969.117	0/0:83:82,1:82:2936:1:36:0,-21.3872,-260.876	0/0:41:41,0:41:1430:0:0:0,-12.3422,-128.992	0/0:64:64,0:64:2255:0:0:0,-19.2659,-203.211	0/0:146:146,0:146:5196:0:0:0,-43.9504,-467.78	0/0:123:123,0:123:4354:0:0:0,-37.0267,-392.033	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/0:82:82,0:82:2888:0:0:0,-24.6845,-260.157	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/0:62:62,0:62:2184:0:0:0,-18.6639,-196.824	0/1:45:23,22:23:809:22:772:-56.2549,0,-59.582	0/1:97:44,53:44:1538:53:1827:-135.504,0,-109.51	0/1:245:141,104:141:4989:104:3617:-251.986,0,-375.408	0/0:40:40,0:40:1391:0:0:0,-12.0412,-125.483	0/0:106:102,4:102:3614:4:144:0,-18.5956,-312.154	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:79:79,0:79:2794:0:0:0,-23.7814,-251.699	0/0:101:101,0:101:3595:0:0:0,-30.404,-323.758	0/1:204:108,96:108:3853:96:3348:-240.128,0,-285.555	0/0:74:73,1:73:2596:1:36:0,-18.6779,-230.291	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:49:24,25:24:847:25:847:-61.7883,0,-61.7983	0/0:102:102,0:102:3590:0:0:0,-30.7051,-323.306	0/1:25:14,11:14:500:11:384:-27.3689,0,-37.8104	0/0:50:50,0:50:1753:0:0:0,-15.0515,-158.049	0/1:56:22,34:22:776:34:1182:-89.8228,0,-53.3045	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/1:54:26,28:26:924:28:975:-71.8059,0,-67.222	0/1:45:16,29:16:576:29:1017:-78.2935,0,-38.6286	0/0:148:148,0:148:5181:0:0:0,-44.5524,-466.437	0/0:55:55,0:55:1956:0:0:0,-16.5566,-176.316
chr06	1121711	.	G	A	27800.7	PASS	AB=0.561035;ABP=83.0616;AC=44;AF=0.234043;AN=188;AO=1401;CIGAR=1X;DP=4809;DPB=4809;DPRA=1.29201;EPP=3045.24;EPPR=7403.39;GTI=2;LEN=1;MEANALT=1;MQM=55.8922;MQMR=53.6995;NS=94;NUMALT=1;ODDS=0.989399;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50138;QR=122004;RO=3408;RPL=1261;RPP=1950.73;RPPR=7403.39;RPR=140;RUN=1;SAF=140;SAP=1950.73;SAR=1261;SRF=0;SRP=7403.39;SRR=3408;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.7651	0/0:63:63,0:63:2236:0:0:0,-18.9649,-200.096	0/1:123:81,42:81:2892:42:1512:-99.0945,0,-221.757	0/0:148:148,0:148:5292:0:0:0,-44.5524,-474.496	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99111	0/1:7:1,6:1:36:6:216:-17.6418,0,-1.48202	0/0:68:68,0:68:2432:0:0:0,-20.47,-217.692	0/1:61:22,39:22:792:39:1400:-106.763,0,-53.0628	0/1:59:21,38:21:752:38:1368:-105.44,0,-50.0168	0/1:101:59,42:59:2116:42:1504:-105.036,0,-157.423	0/1:65:25,40:25:888:40:1434:-109.105,0,-60.6167	0/0:61:61,0:61:2180:0:0:0,-18.3628,-195.625	0/1:58:27,31:27:960:31:1112:-82.7169,0,-68.6861	0/1:44:16,28:16:568:28:1000:-76.976,0,-38.1345	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.4315	0/1:31:12,19:12:428:19:668:-50.9208,0,-28.6265	0/0:42:42,0:42:1503:0:0:0,-12.6433,-133.631	0/1:25:11,14:11:384:14:504:-37.9979,0,-27.009	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.3393	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4214	0/1:95:31,64:31:1116:64:2292:-177.514,0,-71.8695	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1282	0/1:51:19,32:19:680:32:1144:-87.8648,0,-46.047	0/1:90:30,60:30:1076:60:2152:-166.44,0,-69.4813	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.0227	0/0:138:138,0:138:4944:0:0:0,-41.5421,-442.952	0/1:112:61,51:61:2188:51:1812:-128.449,0,-161.859	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.5267	0/1:120:44,76:44:1576:76:2720:-208.541,0,-105.709	0/1:73:41,32:41:1472:32:1148:-81.303,0,-108.518	0/0:38:38,0:38:1360:0:0:0,-11.4391,-121.479	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.85676	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6353	0/1:3:1,2:1:36:2:72:-5.91644,0,-2.48451	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.411	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2801	0/1:141:66,75:66:2368:75:2684:-199.216,0,-170.592	0/0:39:39,0:39:1400:0:0:0,-11.7402,-124.051	0/0:43:43,0:43:1536:0:0:0,-12.9443,-137.469	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/0:82:78,4:78:2800:4:140:0,-11.7465,-238.144	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.2067	0/1:69:30,39:30:1076:39:1400:-105.394,0,-74.9067	0/1:50:25,25:25:900:25:896:-65.7802,0,-66.0291	0/1:44:14,30:14:496:30:1080:-84.1512,0,-31.6145	0/1:58:25,33:25:900:33:1184:-89.2714,0,-63.7833	0/0:26:26,0:26:932:0:0:0,-7.82678,-83.9912	0/0:61:61,0:61:2188:0:0:0,-18.3628,-195.624	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.667	0/1:98:50,48:50:1796:48:1716:-125.071,0,-132.22	0/1:32:14,18:14:500:18:648:-48.5038,0,-35.6895	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.3842	0/0:51:51,0:51:1824:0:0:0,-15.3525,-161.729	0/1:45:13,32:13:464:32:1152:-90.4233,0,-28.454	0/1:16:9,7:9:324:7:252:-18.1711,0,-24.6152	0/1:69:31,38:31:1112:38:1364:-100.996,0,-79.4802	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2485	0/1:12:9,3:9:324:3:108:-6.44993,0,-25.8852	0/1:13:8,5:8:288:5:180:-12.635,0,-22.332	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.628	0/0:52:51,1:51:1828:1:36:0,-12.0579,-160.92	0/1:5:2,3:2:72:3:108:-8.56275,0,-5.32664	0/0:154:154,0:154:5512:0:0:0,-46.3586,-494.232	0/0:64:61,3:61:2192:3:104:0,-9.60108,-187.462	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.056	0/0:32:31,1:31:1116:1:36:0,-6.13026,-97.0061	0/0:64:63,1:63:2256:1:36:0,-15.6676,-197.636	0/0:68:66,2:66:2356:2:72:0,-13.6622,-205.065	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.7139	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.5248	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.3716	0/1:32:18,14:18:644:14:504:-36.0346,0,-48.5211	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.104	0/1:98:40,58:40:1428:58:2080:-157.01,0,-98.7804	0/1:91:22,69:22:780:69:2468:-193.779,0,-43.0361	0/1:98:59,39:59:2112:39:1388:-95.6637,0,-160.546	0/0:28:28,0:28:996:0:0:0,-8.42884,-87.7346	0/0:74:73,1:73:2616:1:36:0,-18.6779,-231.033	0/1:20:11,9:11:396:9:320:-22.8853,0,-29.8717	0/0:52:52,0:52:1872:0:0:0,-15.6536,-167.805	0/0:52:52,0:52:1860:0:0:0,-15.6536,-166.639	0/1:127:53,74:53:1900:74:2632:-198.712,0,-132.672	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.702	0/0:28:28,0:28:1004:0:0:0,-8.42884,-89.9054	0/1:31:12,19:12:424:19:676:-51.8058,0,-29.0661	0/0:70:70,0:70:2508:0:0:0,-21.0721,-224.681	0/1:16:3,13:3:108:13:468:-37.568,0,-5.23336	0/0:43:43,0:43:1536:0:0:0,-12.9443,-137.403	0/1:52:26,26:26:932:26:928:-67.6911,0,-68.1277	0/0:27:27,0:27:964:0:0:0,-8.12781,-86.4863	0/1:74:24,50:24:860:50:1788:-138.646,0,-55.1504	0/1:54:12,42:12:428:42:1488:-116.872,0,-22.3714	0/0:110:110,0:110:3928:0:0:0,-33.1133,-352.924	0/0:83:83,0:83:2976:0:0:0,-24.9855,-267.767
chr06	1124167	.	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chr06	1134442	.	T	G	25168.2	PASS	AB=0.567194;ABP=102.229;AC=48;AF=0.258065;AN=186;AO=1463;CIGAR=1X;DP=5108;DPB=5108;DPRA=1.29887;EPP=3179.87;EPPR=7911.51;GTI=0;LEN=1;MEANALT=1.01961;MQM=59.8722;MQMR=59.8858;NS=93;NUMALT=1;ODDS=0.16852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52142;QR=128537;RO=3642;RPL=1463;RPP=3179.87;RPPR=7911.51;RPR=0;RUN=1;SAF=0;SAP=3179.87;SAR=1463;SRF=0;SRP=7911.51;SRR=3642;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:844:0:0:0,-7.22472,-76.2789	0/0:76:76,0:76:2700:0:0:0,-22.8783,-243.237	0/1:82:22,60:22:776:60:2139:-167.72,0,-45.4777	0/0:122:122,0:122:4300:0:0:0,-36.7257,-386.878	0/1:31:8,23:8:288:23:824:-65.1514,0,-16.9355	0/1:26:8,18:8:288:18:648:-50.8251,0,-18.4406	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:88:31,57:31:1104:57:2036:-157.012,0,-72.7807	0/1:56:20,36:20:689:36:1284:-99.0057,0,-45.4617	0/1:66:20,46:20:720:46:1644:-128.378,0,-45.2584	0/1:38:23,15:23:824:15:532:-36.7739,0,-63.0442	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.595	0/1:68:35,33:35:1240:33:1150:-83.3344,0,-91.4344	0/1:41:16,25:16:568:25:892:-68.2575,0,-39.1096	0/0:53:53,0:53:1873:0:0:0,-15.9546,-168.847	0/1:41:16,25:16:568:25:888:-67.8518,0,-39.1096	0/0:33:33,0:33:1157:0:0:0,-9.93399,-104.434	0/1:34:21,13:21:748:13:464:-31.8625,0,-57.4103	0/0:13:13,0:13:447:0:0:0,-3.91339,-40.5577	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.461	0/1:119:47,72:47:1650:72:2564:-195.178,0,-112.961	0/0:47:47,0:47:1642:0:0:0,-14.1484,-148.064	0/1:71:25,46:25:896:46:1648:-127.235,0,-59.5872	0/1:38:19,19:19:680:19:668:-49.0065,0,-50.09	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:132:131,1:131:4536:1:36:0,-36.1377,-404.76	0/1:123:54,69:54:1924:69:2456:-184.269,0,-136.005	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/1:165:67,98:67:2343:98:3501:-265.501,0,-161.456	0/1:73:22,51:22:780:51:1816:-141.746,0,-48.056	0/0:62:60,2:60:2125:2:72:0,-11.8271,-184.679	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:148:81,67:81:2858:67:2384:-170.265,0,-212.848	0/0:38:38,0:38:1322:0:0:0,-11.4391,-119.275	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	.:.:.:.:.:.:.:.	0/0:44:43,1:43:1513:1:32:0,-10.046,-133.262	0/0:23:22,0:22:743:0:0:0,-6.62266,-66.82	0/1:72:31,41:31:1085:41:1468:-110.742,0,-76.2828	0/1:42:25,17:25:881:17:608:-42.4088,0,-66.9626	0/1:48:23,25:23:828:25:896:-66.5109,0,-60.3947	0/1:78:33,45:33:1172:45:1604:-121.114,0,-82.3072	0/0:43:43,0:43:1501:0:0:0,-12.9443,-135.381	0/0:63:63,0:63:2203:0:0:0,-18.9649,-198.531	0/0:42:42,0:42:1481:0:0:0,-12.6433,-133.582	0/1:92:40,52:40:1402:52:1844:-138.543,0,-98.7784	0/1:88:39,49:39:1404:49:1756:-131.829,0,-100.158	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:42:42,0:42:1477:0:0:0,-12.6433,-133.222	0/1:44:20,24:20:705:24:854:-63.9355,0,-50.5193	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:87:37,50:37:1324:50:1788:-134.943,0,-93.2725	0/0:29:29,0:29:998:0:0:0,-8.72987,-90.1257	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/0:31:31,0:31:1074:0:0:0,-9.33193,-96.964	0/0:75:75,0:75:2681:0:0:0,-22.5772,-241.533	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:139:139,0:139:4858:0:0:0,-41.8432,-437.319	0/0:80:77,3:77:2722:3:108:0,-14.0072,-235.144	0/0:30:30,0:30:1026:0:0:0,-9.0309,-92.6393	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.538	0/0:83:80,2:80:2827:2:72:0,-18.2076,-247.829	0/0:59:58,1:58:2012:1:36:0,-14.1625,-177.675	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.499	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.96	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:45:45,0:45:1577:0:0:0,-13.5463,-142.218	0/1:59:28,31:28:1008:31:1104:-81.9099,0,-73.2756	0/1:94:56,38:56:1977:38:1356:-94.0437,0,-149.878	0/1:119:57,62:57:2018:62:2204:-162.797,0,-146.067	0/0:46:46,0:46:1599:0:0:0,-13.8474,-144.193	0/0:73:73,0:73:2560:0:0:0,-21.9752,-230.65	0/1:15:4,11:4:144:11:388:-30.7419,0,-8.79817	0/0:36:36,0:36:1234:0:0:0,-10.8371,-111.357	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:155:61,94:61:2161:94:3356:-254.818,0,-148.096	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.846	0/1:37:18,19:18:644:19:684:-50.7522,0,-47.1525	0/0:119:118,1:118:4200:1:36:0,-32.2243,-374.585	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.581	0/1:57:26,31:26:936:31:1103:-82.4211,0,-67.4008	0/0:21:21,0:21:733:0:0:0,-6.32163,-66.2897	0/1:57:30,27:30:1061:27:959:-69.4667,0,-78.6407	0/1:42:13,29:13:468:29:1028:-80.1898,0,-29.8164	0/0:130:130,0:130:4602:0:0:0,-39.1339,-414.341	0/0:117:116,0:116:4125:0:0:0,-34.9195,-371.062
chr06	1135458	.	T	C	540453	PASS	AB=0.510096;ABP=23.2233;AC=143;AF=0.760638;AN=188;AO=26430;CIGAR=1X;DP=37658;DPB=37658;DPRA=0;EPP=56685;EPPR=23893.2;GTI=4;LEN=1;MEANALT=1.24468;MQM=59.6589;MQMR=59.4206;NS=94;NUMALT=1;ODDS=7.65656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=939716;QR=400399;RO=11197;RPL=83;RPP=56676.4;RPPR=23893.2;RPR=26347;RUN=1;SAF=26429;SAP=57386.3;SAR=1;SRF=11197;SRP=24317;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:180:0,180:0:0:180:6400:-576.047,-54.1854,0	1/1:358:0,357:0:0:357:12723:-1144.32,-107.468,0	0/1:248:120,127:120:4292:127:4532:-333.195,0,-311.541	1/1:426:0,426:0:0:426:15151:-1363.06,-128.239,0	0/1:198:105,93:105:3754:93:3313:-238.587,0,-278.412	0/1:129:67,62:67:2404:62:2215:-160.765,0,-177.694	1/1:180:1,179:1:36:179:6372:-569.959,-50.5871,0	0/1:293:155,138:155:5520:138:4924:-354.987,0,-408.513	0/1:307:149,158:149:5276:158:5623:-413.685,0,-382.342	0/1:129:52,77:52:1859:77:2726:-206.655,0,-128.462	0/1:486:237,249:237:8496:249:8873:-652.145,0,-617.809	1/1:130:0,130:0:0:130:4620:-415.929,-39.1339,0	0/1:84:44,40:44:1576:40:1408:-101.721,0,-116.793	0/1:85:26,59:26:936:59:2086:-162.419,0,-58.8958	1/1:84:0,84:0:0:84:2999:-270.132,-25.2865,0	0/1:80:38,42:38:1364:42:1483:-109.679,0,-98.9531	1/1:40:0,40:0:0:40:1412:-127.374,-12.0412,0	0/1:32:13,19:13:468:19:684:-52.254,0,-32.8267	1/1:209:0,209:0:0:209:7437:-669.286,-62.9153,0	1/1:244:1,243:1:36:243:8659:-775.21,-69.853,0	0/1:337:174,163:174:6238:163:5777:-418.498,0,-459.941	1/1:291:0,291:0:0:291:10375:-933.53,-87.5997,0	0/1:321:171,150:171:6144:150:5386:-388.226,0,-454.471	0/1:130:62,68:62:2224:68:2423:-179.187,0,-161.264	1/1:169:0,169:0:0:169:5978:-537.961,-50.8741,0	1/1:457:0,457:0:0:457:16292:-1465.88,-137.571,0	0/1:364:160,204:160:5732:204:7213:-539.524,0,-406.315	1/1:35:0,35:0:0:35:1244:-112.257,-10.5361,0	0/1:517:229,286:229:8204:286:10163:-759.108,0,-582.888	0/1:554:279,275:279:9988:275:9770:-712.402,0,-731.956	1/1:201:6,195:6:212:195:6957:-606.718,-41.0822,0	0/1:1379:694,684:694:24779:684:24288:-1769.74,0,-1812.99	1/1:1569:3,1565:3:108:1565:55665:-4997.39,-462.298,0	0/1:1458:671,786:671:24023:786:27925:-2073.19,0,-1721.71	0/1:1987:822,1163:822:29369:1163:41322:-3118.74,0,-2042.73	1/1:1857:4,1850:4:144:1850:65778:-5901.67,-545.156,0	0/1:162:79,83:79:2828:83:2966:-218.305,0,-205.563	1/1:268:0,267:0:0:267:9472:-851.139,-80.375,0	1/1:363:0,363:0:0:363:12885:-1159.17,-109.274,0	0/1:764:357,407:357:12726:407:14434:-1068.61,0,-914.337	1/1:203:2,201:2:72:201:7153:-636.957,-54.2724,0	1/1:257:1,256:1:36:256:9060:-811.753,-73.7913,0	0/1:352:185,166:185:6613:166:5881:-423.362,0,-489.211	0/1:84:39,45:39:1400:45:1572:-116.48,0,-100.995	0/1:47:28,19:28:991:19:657:-45.3032,0,-75.3476	0/1:245:120,125:120:4279:125:4444:-326.37,0,-311.414	1/1:205:1,204:1:36:204:7220:-646.111,-58.1129,0	1/1:261:0,261:0:0:261:9298:-836.625,-78.5688,0	1/1:140:0,140:0:0:140:4940:-444.568,-42.1442,0	0/1:258:125,133:125:4483:133:4749:-349.898,0,-325.873	0/1:190:110,80:110:3934:80:2839:-198.547,0,-297.02	1/1:1704:2,1701:2:72:1701:60656:-5449.11,-506.177,0	1/1:198:1,197:1:36:197:7036:-629.628,-56.0057,0	0/1:138:69,69:69:2457:69:2451:-179.028,0,-179.72	0/1:901:450,451:450:16049:451:16033:-1170.87,0,-1172.38	0/1:221:121,100:121:4331:100:3531:-249.862,0,-322.419	1/1:118:0,118:0:0:118:4167:-375.202,-35.5215,0	0/1:1930:978,948:978:35028:948:33751:-2455.32,0,-2569.41	0/1:1677:846,828:846:30232:828:29461:-2145.65,0,-2211.77	1/1:209:0,208:0:0:208:7438:-669.095,-62.6142,0	1/1:98:0,98:0:0:98:3524:-317.349,-29.5009,0	0/1:1390:666,724:666:23827:724:25802:-1902.43,0,-1724.76	1/1:200:0,200:0:0:200:7115:-640.283,-60.206,0	1/1:263:3,260:3:108:260:9238:-820.861,-69.1139,0	1/1:141:1,140:1:36:140:4968:-443.73,-38.9091,0	1/1:187:0,187:0:0:187:6650:-598.302,-56.2926,0	1/1:302:2,300:2:72:300:10657:-952.064,-84.0743,0	1/1:278:0,278:0:0:278:9893:-890.004,-83.6863,0	1/1:650:0,650:0:0:650:23106:-2078.79,-195.67,0	1/1:127:0,127:0:0:127:4505:-405.499,-38.2308,0	1/1:44:0,44:0:0:44:1564:-141.051,-13.2453,0	0/1:1454:739,714:739:26400:714:25388:-1845.36,0,-1937.03	1/1:193:0,193:0:0:193:6823:-614.066,-58.0988,0	0/1:108:46,62:46:1652:62:2196:-165.245,0,-116.457	0/1:296:146,150:146:5224:150:5346:-392.16,0,-381.072	0/1:265:148,117:148:5305:117:4177:-295.909,0,-397.733	1/1:290:1,289:1:36:289:10285:-921.93,-83.7004,0	1/1:179:3,176:3:108:176:6231:-550.789,-43.8092,0	0/1:1631:880,750:880:31470:750:26615:-1903.25,0,-2338.31	1/1:176:0,175:0:0:175:6189:-556.607,-52.6803,0	1/1:175:0,175:0:0:175:6170:-554.778,-52.6803,0	0/1:354:188,164:188:6710:164:5832:-417.777,0,-497.321	1/1:68:0,68:0:0:68:2416:-217.692,-20.47,0	1/1:86:0,86:0:0:86:3056:-275.262,-25.8886,0	0/1:75:40,35:40:1428:35:1247:-89.9091,0,-106.174	1/1:186:0,186:0:0:186:6616:-595.355,-55.9916,0	0/1:26:16,10:16:576:10:360:-24.9141,0,-44.3257	1/1:78:0,78:0:0:78:2784:-250.776,-23.4803,0	0/1:68:34,34:34:1224:34:1216:-89.2698,0,-89.8849	1/1:621:0,619:0:0:619:21993:-1978.2,-186.338,0	0/1:984:435,548:435:15566:548:19420:-1450.87,0,-1103.87	0/1:93:52,41:52:1872:41:1458:-103.519,0,-140.675	1/1:11:0,11:0:0:11:372:-33.8038,-3.31133,0	1/1:118:0,118:0:0:118:4214:-379.366,-35.5215,0
chr06	1135461	.	GTTTTTTAAC	GTTTTTAAAC,GTTTTTAAC	802463	PASS	AB=0.521267,0.469517;ABP=91.678,185.173;AC=143,45;AF=0.760638,0.239362;AN=188;AO=26706,10620;CIGAR=6M1X3M,1M1D8M;DP=37680;DPB=36605.5;DPRA=0,1.65987;EPP=56767.5,22571.6;EPPR=35.5824;GTI=3;LEN=1,1;MEANALT=4.44681,5.41071;MQM=59.7074,59.5345;MQMR=59.2667;NS=94;NUMALT=2;ODDS=2.70242;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=956061,376218;QR=472;RO=15;RPL=26565,10563;RPP=56776.1,22571.6;RPPR=35.5824;RPR=141,57;RUN=1,1;SAF=26705,10620;SAP=57985.7,23064;SAR=1,0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/1:185:0,184,0:0:0:184,0:6602,0:-593.89,-55.3895,0,-593.89,-55.3895,-593.89	1/1:368:0,364,0:0:0:364,0:13019,0:-1170.89,-109.575,0,-1170.89,-109.575,-1170.89	1/2:243:0,123,113:0:0:123,113:4404,4044:-688.848,-329.723,-292.696,-359.141,0,-325.125	1/1:435:0,431,0:0:0:431,0:15452,0:-1389.66,-129.744,0,-1389.66,-129.744,-1389.66	1/2:198:0,96,102:0:0:96,102:3456,3639:-578.764,-296.968,-268.069,-282.154,0,-251.449	1/2:128:1,63,63:1:30:63,63:2264,2237:-364.211,-179.832,-163.265,-182.309,0,-165.742	1/1:182:0,181,1:0:0:181,1:6466,36:-581.652,-54.4864,0,-578.714,-51.1892,-578.413	1/2:283:0,142,140:0:0:142,140:5084,4913:-814.267,-399.68,-356.934,-414.593,0,-372.449	1/2:304:0,160,143:0:0:160,143:5748,5000:-875.404,-406.691,-358.527,-468.862,0,-425.815	1/2:134:0,80,51:0:0:80,51:2837,1824:-379.653,-148.529,-124.446,-231.195,0,-215.843	1/2:485:1,255,223:1:29:255,223:9145,7896:-1386.01,-640.501,-566.046,-743.526,0,-678.705	1/1:130:0,128,0:0:0:128,0:4596,0:-413.442,-38.5318,0,-413.442,-38.5318,-413.442	1/2:79:0,40,38:0:0:40,38:1440,1356:-228.014,-110.521,-98.48,-117.539,0,-106.1	1/2:86:0,60,26:0:0:60,26:2160,920:-251.52,-75.274,-57.2122,-176.602,0,-168.775	1/1:84:0,84,0:0:0:84,0:3012,0:-271.301,-25.2865,0,-271.301,-25.2865,-271.301	1/2:80:0,41,38:0:0:41,38:1472,1349:-229.983,-109.909,-97.5669,-120.073,0,-108.634	1/1:40:0,40,0:0:0:40,0:1432,0:-129.173,-12.0412,0,-129.173,-12.0412,-129.173	1/2:34:0,21,13:0:0:21,13:756,464:-99.8684,-38.1841,-31.8625,-62.0422,0,-58.1288	1/1:210:0,209,0:0:0:209,0:7500,0:-674.442,-62.9153,0,-674.442,-62.9153,-674.442	1/1:247:0,243,1:0:0:243,1:8744,36:-786.61,-73.1503,0,-783.672,-70.2015,-783.371	1/2:330:0,167,161:0:0:167,161:5976,5716:-952.929,-465.762,-415.49,-487.256,0,-438.791	1/1:292:0,288,0:0:0:288,0:10301,0:-926.5,-86.6966,0,-926.5,-86.6966,-926.5	1/2:315:0,150,161:0:0:150,161:5361,5728:-903.945,-466.846,-421.691,-437.148,0,-388.682	1/2:127:0,69,58:0:0:69,58:2480,2068:-371.241,-168.923,-148.152,-202.676,0,-185.216	1/1:170:0,168,0:0:0:168,0:6016,0:-541.04,-50.573,0,-541.04,-50.573,-541.04	1/1:469:0,465,0:0:0:465,0:16613,0:-1494.48,-139.979,0,-1494.48,-139.979,-1494.48	1/2:357:0,206,151:0:0:206,151:7384,5371:-1040.03,-437.981,-375.968,-602.409,0,-556.953	1/1:36:0,34,0:0:0:34,0:1224,0:-110.123,-10.235,0,-110.123,-10.235,-110.123	1/2:509:0,285,217:0:0:285,217:10224,7725:-1462.87,-629.222,-543.428,-833.67,0,-768.347	1/2:548:0,264,272:0:0:264,272:9465,9611:-1554.28,-782.583,-703.111,-771.7,0,-689.82	1/1:210:0,203,6:0:0:203,6:7263,212:-653.054,-61.1091,0,-635.789,-43.7809,-633.983	1/2:1354:0,688,659:0:0:688,659:24549,23371:-3903.94,-1903.62,-1696.51,-2000.36,0,-1801.98	1/1:1596:1,1585,0:1:28:1585,0:56654,0:-5093.43,-474.917,0,-5093.73,-477.133,-5095.95	1/2:1457:1,810,634:1:36:810,634:29021,22415:-4188.36,-1822.14,-1581.25,-2363.61,0,-2175.69	1/2:1973:1,1173,777:1:34:1173,777:41978,27515:-5659.5,-2238.01,-1887.66,-3419.06,0,-3187.91	1/1:1897:1,1877,2:1:33:1877,2:67171,72:-6037.81,-562.365,0,-6032.23,-559.154,-6034.3	1/2:161:0,83,76:0:0:83,76:2980,2665:-459.622,-216.613,-191.627,-243.049,0,-220.171	1/1:276:0,274,0:0:0:274,0:9780,0:-878.6,-82.4822,0,-878.6,-82.4822,-878.6	1/1:368:1,363,0:1:33:363,0:13036,0:-1169.32,-106.606,0,-1169.62,-109.274,-1172.29	1/2:744:0,410,327:0:0:410,327:14717,11562:-2141.31,-941.374,-817.951,-1199.97,0,-1101.53	1/1:208:0,206,2:0:0:206,2:7344,72:-660.644,-62.0122,0,-654.769,-55.7775,-654.167	1/1:262:0,255,1:0:0:255,1:9164,36:-824.278,-76.7627,0,-821.363,-73.8467,-821.062	1/2:347:0,168,176:0:0:168,176:6013,6242:-998.568,-508.513,-457.94,-490.129,0,-437.148	1/2:86:0,46,39:0:0:46,39:1656,1400:-249.38,-114.26,-100.412,-135.197,0,-123.457	1/2:47:0,20,27:0:0:20,27:716,952:-136.258,-77.8672,-71.8466,-58.7467,0,-50.6189	1/2:248:1,125,121:1:27:125,121:4488,4256:-710.112,-344.312,-308.809,-364.069,0,-329.77	1/1:213:0,207,1:0:0:207,1:7362,32:-662.087,-62.3132,0,-659.509,-59.7321,-659.208	1/1:270:0,267,0:0:0:267,0:9540,0:-858.15,-80.375,0,-858.15,-80.375,-858.15	1/1:143:0,142,0:0:0:142,0:5072,0:-456.169,-42.7463,0,-456.169,-42.7463,-456.169	1/2:259:0,134,122:0:0:134,122:4789,4360:-746.015,-355.546,-315.208,-390.588,0,-353.862	1/2:189:0,79,109:0:0:79,109:2828,3885:-547.363,-316.746,-292.964,-230.723,0,-197.911	1/1:1728:1,1715,0:1:36:1715,0:61524,0:-5530.41,-513.327,0,-5530.71,-516.266,-5533.65	1/1:202:1,199,1:1:29:199,1:7156,36:-641.087,-57.6079,0,-638.45,-56.9443,-640.458	1/2:136:0,70,65:0:0:70,65:2485,2288:-388.559,-186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chr06	1135490	.	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chr06	1190652	.	C	A	30237.8	PASS	AB=0.647813;ABP=506.294;AC=48;AF=0.258065;AN=186;AO=1816;CIGAR=1X;DP=4723;DPB=4723;DPRA=1.47302;EPP=3937.72;EPPR=6308.97;GTI=10;LEN=1;MEANALT=1.06;MQM=44.4411;MQMR=58.5933;NS=93;NUMALT=1;ODDS=0.224175;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63571;QR=101057;RO=2904;RPL=1815;RPP=3937.72;RPPR=6308.97;RPR=1;RUN=1;SAF=1816;SAP=3946.4;SAR=0;SRF=2904;SRP=6308.97;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:2,31:2:72:31:1100:-90.9383,-3.09727,0	0/0:25:23,1:23:808:1:36:0,-4.02196,-69.4388	0/1:115:32,83:32:1106:83:2907:-222.49,0,-64.7195	0/0:95:95,0:95:3330:0:0:0,-28.5978,-299.476	1/1:43:1,42:1:36:42:1478:-126.742,-9.34602,0	0/1:48:9,39:9:324:39:1373:-108.094,0,-14.5878	0/0:51:51,0:51:1757:0:0:0,-15.3525,-158.284	0/1:80:14,66:14:469:66:2311:-180.639,0,-18.4467	0/1:86:29,56:29:1027:56:1993:-151.366,0,-66.7262	0/1:66:32,34:32:1098:34:1178:-83.3297,0,-79.2423	0/1:37:19,18:19:653:18:614:-43.5581,0,-47.7166	0/0:77:77,0:77:2677:0:0:0,-23.1793,-241.091	0/1:61:31,30:31:1073:30:1072:-76.9921,0,-78.5119	0/1:49:27,22:27:956:22:758:-52.9069,0,-71.6053	0/0:58:58,0:58:2004:0:0:0,-17.4597,-180.495	0/1:44:23,21:23:808:21:725:-51.5393,0,-59.7762	0/0:35:35,0:35:1225:0:0:0,-10.536,-110.49	0/1:24:11,13:11:374:13:460:-33.809,0,-26.7257	0/0:28:28,0:28:980:0:0:0,-8.42884,-88.5087	0/0:49:49,0:49:1717:0:0:0,-14.7505,-154.707	0/1:72:15,57:15:528:57:2006:-156.018,0,-26.1491	0/0:24:22,2:22:764:2:63:0,-1.41357,-63.2655	0/1:81:15,66:15:513:66:2287:-178.051,0,-22.0598	0/1:48:15,33:15:523:33:1168:-89.636,0,-32.949	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.4764	0/0:81:81,0:81:2822:0:0:0,-24.3834,-254.125	0/1:135:33,102:33:1146:102:3630:-279.572,0,-62.6723	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3752	0/1:247:87,160:87:3041:160:5579:-417.029,0,-198.951	0/1:84:28,56:28:964:56:1970:-148.664,0,-61.7813	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.354	0/1:8:3,5:3:108:5:180:-13.9149,0,-7.66693	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:2,2:2:68:2:72:-5.55725,0,-4.73704	0/1:7:2,5:2:72:5:180:-13.2532,0,-4.72951	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:154:79,75:79:2715:75:2633:-185.704,0,-197.871	0/0:20:20,0:20:689:0:0:0,-6.0206,-61.7278	0/0:39:39,0:39:1325:0:0:0,-11.7402,-119.476	.:.:.:.:.:.:.:.	0/0:45:41,4:41:1435:4:144:0,-0.873772,-116.681	0/0:26:26,0:26:885:0:0:0,-7.82678,-79.9255	0/1:114:15,99:15:536:99:3443:-270.24,0,-14.2574	0/1:48:21,26:21:701:26:911:-66.7957,0,-48.5334	0/1:43:14,29:14:492:29:998:-76.0708,0,-31.6633	0/1:61:20,41:20:684:41:1452:-110.665,0,-43.5128	0/0:22:22,0:22:771:0:0:0,-6.62266,-69.7103	0/0:41:41,0:41:1448:0:0:0,-12.3422,-130.557	0/0:57:57,0:57:1982:0:0:0,-17.1587,-178.525	0/1:82:43,39:43:1492:39:1347:-94.7536,0,-109.826	0/1:72:15,57:15:532:57:2006:-154.193,0,-26.1546	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2664	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4134	0/1:39:12,27:12:423:27:949:-71.8455,0,-26.6644	0/1:9:1,8:1:32:8:269:-21.6012,0,-0.490043	0/1:68:13,55:13:435:55:1914:-148.41,0,-18.9985	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.7629	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:3:0,3:0:0:3:93:-8.55875,-0.90309,0	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.576	0/0:62:62,0:62:2182:0:0:0,-18.6639,-196.492	0/1:5:2,3:2:72:3:104:-8.0856,0,-5.33073	0/0:95:95,0:95:3242:0:0:0,-28.5978,-291.123	0/0:67:61,6:61:2134:6:216:0,-0.652175,-172.709	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7255	0/0:35:35,0:35:1230:0:0:0,-10.536,-110.202	0/0:45:43,2:43:1485:2:68:0,-7.13785,-127.367	0/0:34:34,0:34:1166:0:0:0,-10.235,-105.205	0/0:21:21,0:21:726:0:0:0,-6.32163,-65.464	0/0:47:47,0:47:1633:0:0:0,-14.1484,-147.221	0/1:12:5,7:5:167:7:252:-18.3555,0,-11.7446	0/0:38:38,0:38:1319:0:0:0,-11.4391,-118.946	0/1:71:37,34:37:1297:34:1182:-83.5641,0,-95.5504	0/1:110:37,73:37:1309:73:2586:-194.883,0,-84.9064	0/1:96:31,65:31:1086:65:2259:-171.981,0,-69.0653	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.2596	0/0:39:38,1:38:1329:1:36:0,-8.18155,-116.228	1/1:6:0,6:0:0:6:216:-19.5874,-1.80618,0	0/0:29:29,0:29:1003:0:0:0,-8.72987,-90.5346	0/0:18:18,0:18:616:0:0:0,-5.41854,-55.7579	0/1:120:43,77:43:1498:77:2690:-201.063,0,-98.8837	0/0:45:45,0:45:1573:0:0:0,-13.5463,-141.765	0/0:42:42,0:42:1471:0:0:0,-12.6433,-132.334	0/1:24:14,10:14:474:10:352:-24.3938,0,-35.7533	0/0:106:106,0:106:3722:0:0:0,-31.9092,-334.63	0/1:19:12,7:12:420:7:233:-15.3805,0,-32.3741	0/0:55:55,0:55:1887:0:0:0,-16.5566,-170.031	0/1:58:20,38:20:691:38:1317:-97.855,0,-44.9971	0/0:32:32,0:32:1128:0:0:0,-9.63296,-101.27	0/1:100:53,47:53:1802:47:1624:-113.754,0,-132.352	0/1:51:18,33:18:597:33:1137:-85.2672,0,-38.6728	0/0:64:64,0:64:2232:0:0:0,-19.2659,-200.925	0/0:90:90,0:90:3141:0:0:0,-27.0927,-281.904
chr06	1190810	.	GAA	TAA	36397.7	PASS	AB=0.579049;ABP=199.382;AC=49;AF=0.260638;AN=188;AO=2113;CIGAR=1X2M;DP=7419;DPB=7419;DPRA=1.09946;EPP=4591.33;EPPR=11477.1;GTI=2;LEN=1;MEANALT=1.21154;MQM=48.0767;MQMR=35.4712;NS=94;NUMALT=1;ODDS=0.325578;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75552;QR=187362;RO=5284;RPL=2113;RPP=4591.33;RPPR=11477.1;RPR=0;RUN=1;SAF=0;SAP=4591.33;SAR=2113;SRF=0;SRP=11477.1;SRR=5284;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:3,8:3:108:8:280:-21.9812,0,-5.43486	0/0:111:111,0:111:3911:0:0:0,-33.4143,-306.13	0/1:71:32,39:32:1143:39:1397:-103.019,0,-67.9064	0/0:151:148,2:148:5251:2:72:0,-38.6306,-428.511	0/1:61:22,39:22:763:39:1401:-106.395,0,-44.3381	0/1:53:10,43:10:356:43:1537:-120.858,0,-12.4205	0/0:31:31,0:31:1105:0:0:0,-9.33193,-91.4145	0/1:140:39,100:39:1393:100:3571:-275.23,0,-65.321	0/1:69:25,43:25:898:43:1528:-114.702,0,-49.3544	0/1:128:42,85:42:1483:85:3040:-233.447,0,-84.427	0/1:48:22,26:22:770:26:918:-67.464,0,-50.2354	0/0:98:98,0:98:3472:0:0:0,-29.5009,-271.678	0/1:71:34,37:34:1199:37:1332:-97.4605,0,-73.179	0/1:66:23,43:23:824:43:1543:-117.987,0,-47.2497	0/0:81:81,0:81:2896:0:0:0,-24.3834,-240.582	0/1:52:23,29:23:826:29:1042:-77.2805,0,-49.6758	0/0:59:59,0:59:2071:0:0:0,-17.7608,-160.959	0/1:85:45,40:45:1610:40:1436:-102.417,0,-100.293	0/0:34:34,0:34:1199:0:0:0,-10.235,-93.6805	0/0:136:136,0:136:4796:0:0:0,-40.9401,-400.544	0/1:110:41,68:41:1439:68:2420:-182.773,0,-82.881	0/0:87:87,0:87:3096:0:0:0,-26.1896,-262.782	0/1:41:17,24:17:603:24:860:-64.7195,0,-38.5657	0/1:119:48,71:48:1672:71:2538:-190.368,0,-100.107	0/0:34:34,0:34:1224:0:0:0,-10.235,-98.544	0/0:226:226,0:226:7964:0:0:0,-68.0328,-677.554	0/1:209:85,124:85:3022:124:4435:-333.326,0,-180.325	0/0:65:65,0:65:2326:0:0:0,-19.5669,-188.189	0/1:209:66,142:66:2353:142:5081:-391.387,0,-137.583	0/1:112:48,64:48:1682:64:2286:-170.228,0,-102.556	0/0:70:70,0:70:2482:0:0:0,-21.0721,-205.761	0/1:9:2,7:2:72:7:252:-20.1656,0,-3.45843	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.08924	1/1:1:0,1:0:0:1:36:-3.55862,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.74,-0.60206,0	0/0:5:5,0:5:175:0:0:0,-1.50515,-14.1829	0/1:276:144,130:144:5135:130:4676:-336.329,0,-353.602	0/0:107:106,0:106:3754:0:0:0,-31.9092,-304.786	0/0:82:81,0:81:2893:0:0:0,-24.3834,-224.818	1/1:2:0,2:0:0:2:69:-6.24389,-0.60206,0	0/0:101:97,4:97:3436:4:143:0,-17.5423,-266.366	0/0:25:25,0:25:890:0:0:0,-7.52575,-67.5578	0/1:84:39,45:39:1369:45:1596:-117.327,0,-86.7297	0/1:101:49,52:49:1741:52:1863:-135.559,0,-115.198	0/1:103:52,51:52:1861:51:1828:-132.789,0,-124.374	0/1:61:22,39:22:784:39:1400:-107.255,0,-48.3288	0/0:89:89,0:89:3163:0:0:0,-26.7917,-246.235	0/0:148:147,0:147:5209:0:0:0,-44.2514,-434.764	0/0:80:80,0:80:2844:0:0:0,-24.0824,-238.402	0/1:132:56,76:56:1988:76:2717:-202.617,0,-126.148	0/1:115:55,60:55:1937:60:2140:-157.595,0,-130.992	0/0:7:7,0:7:237:0:0:0,-2.10721,-20.2459	0/0:64:64,0:64:2287:0:0:0,-19.2659,-177.006	0/1:17:7,10:7:252:10:360:-27.3733,0,-16.7935	0/1:7:6,1:6:212:1:33:-0.891869,0,-14.7998	0/1:119:49,70:49:1718:70:2510:-187.943,0,-102.87	0/0:27:26,0:26:920:0:0:0,-7.82678,-75.9056	0/1:3:2,1:2:64:1:36:-2.68614,0,-4.96048	0/1:5:3,2:3:108:2:72:-5.31438,0,-7.73647	0/0:43:43,0:43:1523:0:0:0,-12.9443,-123.467	0/0:102:101,1:101:3584:1:36:0,-27.122,-296.864	0/1:14:2,12:2:72:12:432:-34.6256,0,-2.14326	0/0:120:120,0:120:4270:0:0:0,-36.1236,-365.827	0/0:109:107,2:107:3789:2:72:0,-26.0045,-308.172	0/0:37:37,0:37:1322:0:0:0,-11.1381,-106.24	0/0:60:60,0:60:2128:0:0:0,-18.0618,-176.235	0/0:100:97,2:97:3438:2:72:0,-23.3253,-277.17	0/0:91:89,2:89:3127:2:72:0,-20.5859,-255.093	0/0:23:23,0:23:817:0:0:0,-6.92369,-66.1123	0/0:34:34,0:34:1219:0:0:0,-10.235,-92.5596	0/0:88:88,0:88:3147:0:0:0,-26.4906,-268.435	0/1:12:6,6:6:214:6:206:-15.1629,0,-13.1628	0/0:56:56,0:56:1974:0:0:0,-16.8577,-153.317	0/1:52:21,31:21:742:31:1097:-82.3004,0,-42.7831	0/1:101:41,60:41:1469:60:2135:-159.765,0,-88.2267	0/1:139:63,76:63:2247:76:2712:-199.714,0,-142.974	0/0:60:60,0:60:2109:0:0:0,-18.0618,-164.708	0/0:86:83,0:83:2942:0:0:0,-24.9855,-229.353	0/1:13:6,7:6:213:7:237:-17.5269,0,-13.0503	0/0:106:106,0:106:3780:0:0:0,-31.9092,-305.655	0/0:90:90,0:90:3201:0:0:0,-27.0927,-248.33	0/1:129:47,82:47:1657:82:2930:-223.033,0,-99.7418	0/0:124:123,0:123:4368:0:0:0,-37.0267,-363.61	0/0:51:51,0:51:1801:0:0:0,-15.3525,-150.689	0/1:112:53,59:53:1882:59:2120:-156.546,0,-123.433	0/0:186:186,0:186:6577:0:0:0,-55.9916,-544.8	0/1:68:30,38:30:1075:38:1364:-100.709,0,-63.8396	0/0:90:90,0:90:3170:0:0:0,-27.0927,-247.634	0/1:111:64,46:64:2278:46:1642:-112.362,0,-143.642	0/0:22:22,0:22:780:0:0:0,-6.62266,-63.6307	0/1:80:37,39:37:1314:39:1389:-100.073,0,-83.9038	0/1:100:30,70:30:1064:70:2516:-195.114,0,-59.1062	0/0:68:68,0:68:2429:0:0:0,-20.47,-200.611	0/0:129:129,0:129:4546:0:0:0,-38.8329,-379.626
chr06	1231562	.	T	C	105978	PASS	AB=0.492095;ABP=4.65822;AC=142;AF=0.771739;AN=184;AO=4991;CIGAR=1X;DP=6565;DPB=6565;DPRA=9.00687;EPP=10840.8;EPPR=3410.05;GTI=1;LEN=1;MEANALT=1.05495;MQM=59.9888;MQMR=59.9994;NS=92;NUMALT=1;ODDS=0.977793;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179012;QR=56186;RO=1569;RPL=0;RPP=10840.8;RPPR=3410.05;RPR=4991;RUN=1;SAF=4991;SAP=10840.8;SAR=0;SRF=1569;SRP=3410.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:22,20:22:792:20:716:-52.1245,0,-58.9624	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:117:51,66:51:1836:66:2376:-178.877,0,-130.3	1/1:152:1,151:1:36:151:5420:-484.33,-42.1583,0	0/1:39:21,18:21:756:18:644:-46.5504,0,-56.6271	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	0/1:74:46,28:46:1640:28:1000:-68.0392,0,-125.612	0/1:87:65,22:65:2328:22:792:-45.4127,0,-183.59	0/1:65:30,35:30:1080:35:1256:-93.7783,0,-77.9463	0/1:73:41,32:41:1476:32:1152:-82.015,0,-111.161	1/1:126:0,125:0:0:125:4488:-403.728,-37.6288,0	0/1:77:41,36:41:1476:36:1296:-93.7646,0,-109.957	0/1:71:37,34:37:1324:34:1220:-88.7337,0,-98.089	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:68:27,41:27:957:41:1468:-111.946,0,-65.9738	1/1:54:0,54:0:0:54:1936:-174.508,-16.2556,0	0/1:37:22,15:22:788:15:540:-37.7984,0,-60.1067	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:104:2,102:2:72:102:3668:-323.485,-24.4704,0	0/1:110:59,51:59:2101:51:1824:-131.328,0,-156.244	1/1:75:2,73:2:72:73:2612:-228.491,-15.7405,0	0/1:63:28,35:28:1004:35:1248:-93.66,0,-71.711	0/1:48:31,17:31:1108:17:612:-40.964,0,-85.5816	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:185:0,185:0:0:185:6644:-598.035,-55.6906,0	0/1:172:69,103:69:2468:103:3700:-281.424,0,-170.597	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:158:71,87:71:2544:87:3120:-233.463,0,-181.648	0/1:112:45,67:45:1589:67:2408:-183.261,0,-109.583	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	.:.:.:.:.:.:.:.	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2796	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:196:109,87:109:3916:87:3120:-222.024,0,-293.63	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:60:3,57:3:108:57:2036:-173.437,-7.98663,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:90:44,46:44:1572:46:1648:-121.516,0,-114.679	0/1:65:26,39:26:936:39:1403:-107.002,0,-64.9925	0/1:51:28,23:28:992:23:820:-58.77,0,-74.2419	0/1:61:26,35:26:932:35:1256:-94.9825,0,-65.836	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:115:0,115:0:0:115:4128:-371.703,-34.6185,0	1/1:100:0,99:0:0:99:3533:-317.818,-29.802,0	0/1:64:37,27:37:1328:27:972:-68.532,0,-100.556	0/1:85:43,42:43:1544:42:1512:-110.517,0,-113.666	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:84:0,84:0:0:84:3004:-270.592,-25.2865,0	0/1:60:41,19:41:1476:19:680:-43.4674,0,-115.074	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:90:34,56:34:1204:56:2000:-153.181,0,-81.5731	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	1/1:63:2,61:2:72:61:2188:-190.349,-12.1282,0	1/1:97:1,96:1:36:96:3452:-307.293,-25.6016,0	.:.:.:.:.:.:.:.	1/1:150:0,150:0:0:150:5396:-485.768,-45.1545,0	1/1:122:2,120:2:72:120:4312:-381.418,-29.8889,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:59:0,58:0:0:58:2064:-185.671,-17.4597,0	1/1:93:4,89:4:144:89:3192:-274.189,-14.6822,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	1/1:130:0,130:0:0:130:4656:-419.202,-39.1339,0	0/1:78:34,44:34:1212:44:1580:-119.011,0,-85.906	0/1:104:54,50:54:1932:50:1800:-130.869,0,-142.849	0/1:107:40,67:40:1424:67:2400:-184.047,0,-96.2473	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:74:0,73:0:0:73:2612:-235.116,-21.9752,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	0/1:125:62,63:62:2224:63:2252:-165.314,0,-162.795	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:70:1,69:1:36:69:2464:-218.416,-17.4738,0	0/1:53:25,28:25:900:28:1004:-74.7213,0,-65.3664	1/1:127:1,126:1:36:126:4516:-403.009,-34.6325,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:69:0,68:0:0:68:2440:-219.495,-20.47,0	0/1:92:60,32:60:2151:32:1152:-76.2954,0,-166.162	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	0/1:125:70,55:70:2508:55:1968:-139.766,0,-188.343	0/1:75:48,27:48:1720:27:972:-65.2207,0,-132.508	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0
chr06	1284624	.	A	T	174463	PASS	AB=0.625528;ABP=488.75;AC=145;AF=0.77957;AN=186;AO=7027;CIGAR=1X;DP=8408;DPB=8408;DPRA=0;EPP=15261.9;EPPR=2999.64;GTI=4;LEN=1;MEANALT=1.01075;MQM=59.9619;MQMR=59.9906;NS=93;NUMALT=1;ODDS=0.0925742;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250799;QR=49389;RO=1380;RPL=6031;RPP=7837.01;RPPR=2913.41;RPR=996;RUN=1;SAF=996;SAP=7837.01;SAR=6031;SRF=10;SRP=2913.41;SRR=1370;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:17,23:17:608:23:828:-62.8029,0,-43.0108	1/1:62:1,61:1:36:61:2172:-192.14,-15.0656,0	0/1:138:25,113:25:896:113:4040:-322.246,0,-39.4182	1/1:201:4,197:4:144:197:7072:-623.224,-47.1934,0	0/1:22:5,17:5:180:17:612:-48.7908,0,-9.9294	1/1:19:1,18:1:32:18:648:-55.4526,-2.52026,0	1/1:105:1,104:1:36:104:3720:-331.403,-28.0099,0	0/1:107:27,80:27:968:80:2856:-225.068,0,-55.2272	0/1:94:26,68:26:932:68:2424:-190.12,0,-55.902	0/1:122:58,64:58:2068:64:2279:-168.647,0,-149.665	0/1:46:17,29:17:608:29:1040:-80.067,0,-41.2046	1/1:128:4,124:4:144:124:4444:-386.817,-25.2182,0	0/1:89:33,56:33:1179:56:2008:-154.202,0,-79.6256	0/1:78:30,48:30:1064:48:1701:-129.894,0,-72.5913	1/1:103:5,98:5:180:98:3516:-300.096,-14.454,0	0/1:61:24,37:24:856:37:1328:-101.459,0,-58.9983	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:34:16,18:16:561:18:629:-46.6988,0,-40.5821	1/1:55:2,53:2:72:53:1885:-163.09,-9.71993,0	1/1:209:0,209:0:0:209:7458:-671.264,-62.9153,0	0/1:181:72,109:72:2580:109:3914:-297.966,0,-177.963	1/1:92:0,92:0:0:92:3273:-294.734,-27.6948,0	0/1:92:27,65:27:968:65:2290:-178.664,0,-59.7426	0/1:60:26,34:26:932:34:1224:-92.4052,0,-66.1371	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:252:4,248:4:144:248:8828:-781.184,-62.5459,0	0/1:231:63,168:63:2252:168:5970:-467.871,0,-133.388	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:213:74,139:74:2656:139:4980:-384.228,0,-175.166	0/1:105:37,68:37:1332:68:2410:-185.545,0,-88.5742	1/1:112:0,112:0:0:112:3989:-359.197,-33.7154,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:214:95,119:95:3389:119:4256:-318.799,0,-240.804	1/1:119:0,119:0:0:119:4226:-380.513,-35.8226,0	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:98:1,97:1:36:97:3446:-306.751,-25.9027,0	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	0/1:87:30,57:30:1080:57:2032:-156.963,0,-71.3236	0/1:63:24,39:24:864:39:1404:-107.694,0,-59.1177	0/1:70:29,41:29:1040:41:1438:-108.64,0,-72.8423	0/1:74:30,44:30:1060:44:1576:-119.847,0,-73.4351	1/1:105:0,105:0:0:105:3745:-337.25,-31.6082,0	1/1:114:0,114:0:0:114:4023:-362.259,-34.3174,0	1/1:99:0,99:0:0:99:3533:-318.176,-29.802,0	0/1:103:34,69:34:1216:69:2468:-191.368,0,-78.7405	0/1:106:32,74:32:1140:74:2633:-205.307,0,-71	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:101:0,101:0:0:101:3571:-321.596,-30.404,0	0/1:42:16,26:16:572:26:932:-71.5556,0,-39.1702	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:108:56,52:56:1996:52:1864:-135.528,0,-147.403	1/1:42:1,41:1:36:41:1472:-129.176,-9.04499,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	1/1:72:0,72:0:0:72:2584:-232.801,-21.6742,0	1/1:145:6,139:6:212:139:4935:-424.874,-24.2246,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:176:2,174:2:72:174:6202:-551.44,-46.1446,0	1/1:234:2,232:2:72:232:8312:-741.251,-63.6043,0	1/1:80:0,79:0:0:79:2809:-252.837,-23.7814,0	1/1:65:0,65:0:0:65:2328:-209.29,-19.567,0	1/1:136:2,134:2:72:134:4775:-423.061,-34.1034,0	1/1:189:4,185:4:144:185:6613:-581.878,-43.5811,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	1/1:79:0,79:0:0:79:2821:-253.9,-23.7814,0	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	1/1:136:0,136:0:0:136:4864:-437.596,-40.9401,0	0/1:119:42,77:42:1496:77:2714:-208.68,0,-99.112	0/1:94:18,76:18:648:76:2732:-217.736,0,-30.3551	0/1:152:73,79:73:2616:79:2813:-207.652,0,-189.931	1/1:49:0,49:0:0:49:1733:-156.253,-14.7505,0	1/1:118:1,117:1:36:117:4150:-370.085,-31.9233,0	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:123:0,123:0:0:123:4358:-392.396,-37.0267,0	0/1:160:67,93:67:2408:93:3336:-252.292,0,-168.811	1/1:100:1,99:1:36:99:3556:-316.649,-26.5047,0	1/1:83:2,81:2:72:81:2881:-252.688,-18.1488,0	0/1:67:31,36:31:1112:36:1288:-96.0546,0,-80.2223	1/1:164:3,161:3:104:161:5761:-508.901,-39.6661,0	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2753	1/1:112:3,109:3:108:109:3900:-341.119,-23.6402,0	0/1:88:42,46:42:1508:46:1644:-121.758,0,-109.524	1/1:40:1,39:1:36:39:1396:-122.341,-8.44293,0	0/1:111:49,62:49:1760:62:2201:-164.939,0,-125.27	0/1:80:50,30:50:1796:30:1061:-71.717,0,-137.84	1/1:165:0,165:0:0:165:5914:-532.366,-49.67,0	1/1:118:0,118:0:0:118:4236:-381.418,-35.5215,0
chr06	1309993	.	A	G	178676	PASS	AB=0.475539;ABP=27.3372;AC=139;AF=0.739362;AN=188;AO=8305;CIGAR=1X;DP=10781;DPB=10781;DPRA=46.8522;EPP=18028.4;EPPR=5366.55;GTI=4;LEN=1;MEANALT=1.02174;MQM=59.9943;MQMR=59.9879;NS=94;NUMALT=1;ODDS=3.38091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293754;QR=88171;RO=2474;RPL=90;RPP=17263.8;RPPR=4991.48;RPR=8215;RUN=1;SAF=91;SAP=17255.3;SAR=8214;SRF=46;SRP=4983.11;SRR=2428;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:12,9:12:432:9:311:-22.0021,0,-32.8996	1/1:192:0,192:0:0:192:6799:-611.983,-57.7978,0	0/1:143:76,67:76:2724:67:2376:-171.049,0,-202.356	1/1:196:1,195:1:36:195:6912:-618.553,-55.4036,0	0/1:65:38,27:38:1356:27:937:-65.074,0,-102.774	0/1:69:37,32:37:1316:32:1131:-81.3185,0,-97.9707	1/1:141:0,141:0:0:141:5030:-452.847,-42.4452,0	0/1:214:111,103:111:3933:103:3615:-261.138,0,-289.741	0/1:123:61,62:61:2154:62:2175:-158.988,0,-157.1	0/1:116:71,45:71:2548:45:1587:-108.199,0,-194.651	0/1:47:21,26:21:748:26:919:-68.8778,0,-53.4969	1/1:114:0,114:0:0:114:3995:-359.74,-34.3174,0	0/1:97:51,46:51:1819:46:1636:-118.329,0,-134.791	0/1:70:39,31:39:1379:31:1108:-78.9589,0,-103.336	1/1:111:0,111:0:0:111:3950:-355.693,-33.4143,0	0/1:69:34,35:34:1224:35:1252:-92.214,0,-89.696	1/1:63:0,63:0:0:63:2212:-199.343,-18.9649,0	0/1:63:37,26:37:1320:26:928:-64.8734,0,-100.137	1/1:53:0,53:0:0:53:1866:-168.218,-15.9546,0	1/1:304:4,300:4:144:300:10629:-943.214,-78.1995,0	0/1:182:91,91:91:3232:91:3251:-238.023,0,-236.314	1/1:93:0,92:0:0:92:3264:-293.62,-27.6948,0	0/1:61:45,16:45:1600:16:564:-32.7275,0,-125.927	0/1:73:35,38:35:1240:38:1364:-101.086,0,-89.9293	1/1:107:0,107:0:0:107:3778:-340.221,-32.2102,0	1/1:394:0,394:0:0:394:13939:-1254.29,-118.606,0	0/1:236:119,117:119:4242:117:4128:-300.533,0,-310.917	1/1:42:0,42:0:0:42:1482:-133.673,-12.6433,0	0/1:189:118,71:118:4221:71:2521:-170.248,0,-323.174	0/1:158:66,92:66:2352:92:3269:-246.868,0,-164.377	1/1:142:0,142:0:0:142:4998:-449.972,-42.7463,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:23:3,20:3:99:20:720:-58.2051,0,-2.31289	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:15:0,15:0:0:15:512:-46.4017,-4.51545,0	0/1:296:149,147:149:5310:147:5155:-374.993,0,-388.931	1/1:180:1,179:1:36:179:6339:-567.006,-50.5871,0	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:192:2,190:2:72:190:6685:-594.895,-50.961,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/1:156:88,68:88:3145:68:2399:-169.204,0,-236.313	0/1:114:62,52:62:2216:52:1833:-130.931,0,-165.387	0/1:117:67,50:67:2390:50:1752:-122.741,0,-180.136	0/1:135:68,67:68:2429:67:2378:-173.638,0,-178.225	1/1:188:0,188:0:0:188:6622:-596.062,-56.5936,0	1/1:231:0,231:0:0:231:8180:-736.218,-69.5379,0	1/1:143:0,143:0:0:143:5061:-455.637,-43.0473,0	0/1:178:86,92:86:3084:92:3251:-239.226,0,-224.204	0/1:169:82,87:82:2931:87:3048:-223.675,0,-213.15	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:162:0,162:0:0:162:5766:-519.055,-48.7669,0	0/1:57:32,25:32:1109:25:865:-61.0023,0,-82.9533	0/1:26:11,15:11:392:15:532:-40.3863,0,-27.7933	0/1:148:80,68:80:2846:68:2407:-172.333,0,-211.825	1/1:30:0,30:0:0:30:1055:-95.26,-9.0309,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:10:4,6:4:140:6:212:-16.4145,0,-9.93428	1/1:81:0,81:0:0:81:2852:-256.918,-24.3834,0	1/1:161:0,161:0:0:161:5705:-513.571,-48.4658,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:269:0,269:0:0:269:9499:-854.877,-80.9771,0	1/1:222:3,219:3:108:219:7737:-686.293,-56.7535,0	1/1:73:0,73:0:0:73:2611:-235.237,-21.9752,0	1/1:97:0,97:0:0:97:3448:-310.532,-29.1999,0	1/1:214:1,213:1:36:213:7476:-669.296,-60.8221,0	1/1:149:0,149:0:0:149:5310:-478.036,-44.8535,0	1/1:10:0,10:0:0:10:334:-30.3829,-3.0103,0	1/1:87:2,85:2:72:85:2984:-261.954,-19.3529,0	1/1:72:0,72:0:0:72:2567:-231.28,-21.6742,0	0/1:17:11,6:11:383:6:197:-12.9338,0,-29.6857	1/1:116:0,116:0:0:116:4096:-368.826,-34.9195,0	0/1:84:34,50:34:1216:50:1784:-135.556,0,-84.46	0/1:122:54,68:54:1927:68:2404:-179.891,0,-136.98	0/1:227:113,114:113:4030:114:4053:-296.624,0,-294.555	1/1:107:0,107:0:0:107:3795:-341.751,-32.2102,0	1/1:126:0,126:0:0:126:4473:-402.739,-37.9298,0	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	1/1:157:0,157:0:0:157:5562:-500.706,-47.2617,0	1/1:137:0,137:0:0:137:4833:-435.127,-41.2411,0	0/1:301:174,126:174:6222:126:4421:-307.393,0,-469.407	1/1:126:1,125:1:36:125:4444:-397.229,-35.027,0	1/1:81:0,81:0:0:81:2874:-258.897,-24.3834,0	0/1:112:45,67:45:1603:67:2358:-178.761,0,-110.844	1/1:199:0,199:0:0:199:7062:-635.645,-59.905,0	0/1:40:15,25:15:536:25:887:-68.1069,0,-36.5336	1/1:83:0,83:0:0:83:2944:-265.195,-24.9855,0	0/1:79:40,39:40:1427:39:1374:-100.176,0,-104.945	1/1:22:0,22:0:0:22:767:-69.3479,-6.62266,0	0/1:75:44,31:44:1559:31:1116:-78.1744,0,-118.024	0/1:160:111,49:111:3933:49:1728:-107.639,0,-306	1/1:103:0,103:0:0:103:3619:-325.916,-31.0061,0	1/1:166:0,166:0:0:166:5874:-528.773,-49.971,0
chr06	1332776	.	G	A	21032.8	PASS	AB=0.490875;ABP=4.95209;AC=45;AF=0.244565;AN=184;AO=1330;CIGAR=1X;DP=5581;DPB=5581;DPRA=1.05478;EPP=2891.07;EPPR=9223.08;GTI=0;LEN=1;MEANALT=1.02083;MQM=45.2812;MQMR=59.089;NS=92;NUMALT=1;ODDS=2.93184;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47489;QR=150074;RO=4246;RPL=1330;RPP=2891.07;RPPR=9223.08;RPR=0;RUN=1;SAF=1330;SAP=2891.07;SAR=0;SRF=4246;SRP=9223.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:28,43:28:982:43:1537:-112.509,0,-67.3138	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.861	0/1:136:66,70:66:2338:70:2508:-181.845,0,-169.591	0/0:92:92,0:92:3292:0:0:0,-27.6948,-295.024	0/1:30:16,14:16:555:14:504:-35.4721,0,-41.2451	0/1:15:7,8:7:248:8:288:-21.4699,0,-18.12	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.096	0/1:69:43,26:43:1532:26:932:-62.6042,0,-117.366	0/1:98:46,52:46:1635:52:1868:-135.795,0,-117.901	0/1:60:23,37:23:785:37:1316:-98.4963,0,-52.8561	0/1:42:19,23:19:671:23:824:-60.1381,0,-48.0018	0/0:79:79,0:79:2741:0:0:0,-23.7814,-246.771	0/1:77:44,33:44:1572:33:1175:-80.5879,0,-117.92	0/1:53:28,25:28:991:25:895:-62.744,0,-73.5131	0/0:68:68,0:68:2410:0:0:0,-20.47,-217.014	0/1:56:28,28:28:979:28:1004:-72.6173,0,-71.5644	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5821	0/1:31:17,14:17:599:14:504:-35.0868,0,-44.8343	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.748	0/0:83:83,0:83:2936:0:0:0,-24.9855,-264.217	0/1:100:47,53:47:1684:53:1892:-137.825,0,-121.583	0/0:62:62,0:62:2146:0:0:0,-18.6639,-191.973	0/1:62:33,29:33:1162:29:1036:-73.2986,0,-86.1893	0/1:60:30,30:30:1055:30:1071:-75.6016,0,-76.7725	0/0:75:75,0:75:2666:0:0:0,-22.5772,-239.614	0/0:99:99,0:99:3512:0:0:0,-29.802,-316.205	0/1:167:81,85:81:2888:85:2992:-210.458,0,-209.288	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:105:46,59:46:1648:59:2101:-153.904,0,-116.838	0/1:61:36,25:36:1292:25:881:-59.7784,0,-98.1925	0/0:54:54,0:54:1898:0:0:0,-16.2556,-170.672	0/1:17:7,10:7:252:10:360:-27.1967,0,-17.9007	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.5977	0/1:3:1,2:1:36:2:72:-5.85828,0,-2.69518	1/1:6:0,6:0:0:6:216:-19.1737,-1.80618,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9541	0/1:150:74,76:74:2613:76:2723:-197.122,0,-188.87	0/0:86:86,0:86:3053:0:0:0,-25.8886,-274.905	0/0:41:41,0:41:1456:0:0:0,-12.3422,-131.197	1/1:1:0,1:0:0:1:36:-3.54852,-0.30103,0	0/0:63:62,1:62:2219:1:36:0,-15.4164,-195.427	0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.8	0/1:82:49,33:49:1739:33:1175:-77.2877,0,-131.999	0/1:38:24,14:24:852:14:491:-32.7389,0,-65.538	0/1:50:23,27:23:807:27:963:-71.1975,0,-57.8692	0/1:104:51,53:51:1817:53:1904:-137.256,0,-132.36	0/0:67:66,0:66:2322:0:0:0,-19.868,-208.806	0/0:96:95,0:95:3395:0:0:0,-28.5978,-305.192	0/0:68:68,0:68:2408:0:0:0,-20.47,-216.52	0/1:56:31,25:31:1079:25:896:-62.6651,0,-80.5573	0/1:70:36,34:36:1264:34:1201:-85.5349,0,-92.9309	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.167	0/1:15:6,9:6:216:9:324:-24.7324,0,-15.2751	.:.:.:.:.:.:.:.	0/1:71:39,32:39:1392:32:1152:-80.836,0,-103.625	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.413	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:11:5,6:5:180:6:216:-16.3061,0,-13.2407	0/0:61:60,1:60:2131:1:36:0,-14.8143,-188.267	0/0:68:68,0:68:2391:0:0:0,-20.47,-215.361	.:.:.:.:.:.:.:.	0/0:102:100,0:100:3568:0:0:0,-30.103,-320.917	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.948	0/0:55:55,0:55:1940:0:0:0,-16.5566,-174.829	0/0:43:43,0:43:1512:0:0:0,-12.9443,-136.367	0/0:83:83,0:83:2892:0:0:0,-24.9855,-260.343	0/0:90:89,1:89:3141:1:36:0,-23.5259,-277.269	0/0:36:36,0:36:1276:0:0:0,-10.8371,-115.098	0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.733	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5237	0/1:7:2,5:2:72:5:180:-14.3001,0,-4.72951	0/0:135:135,0:135:4750:0:0:0,-40.639,-427.544	0/1:55:30,25:30:1068:25:896:-63.5286,0,-79.8754	0/1:96:56,40:56:1977:40:1410:-94.6867,0,-148.995	0/1:136:55,81:55:1956:81:2888:-212.985,0,-135.314	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.853	0/0:46:45,1:45:1580:1:36:0,-10.2888,-138.901	0/1:14:5,9:5:180:9:324:-24.5699,0,-12.3376	0/0:34:33,1:33:1180:1:36:0,-6.6865,-102.89	0/0:48:48,0:48:1683:0:0:0,-14.4494,-151.661	0/1:122:71,51:71:2543:51:1832:-125.16,0,-191.669	0/0:55:55,0:55:1947:0:0:0,-16.5566,-175.353	0/0:75:75,0:75:2605:0:0:0,-22.5772,-234.552	0/1:39:21,18:21:724:18:644:-45.6679,0,-52.8777	0/0:141:141,0:141:4933:0:0:0,-42.4452,-443.68	0/1:28:17,11:17:600:11:396:-27.1573,0,-45.9004	0/0:61:61,0:61:2151:0:0:0,-18.3628,-193.585	0/1:76:40,36:40:1394:36:1292:-92.0433,0,-102.77	0/0:41:41,0:41:1442:0:0:0,-12.3422,-129.845	0/1:102:65,37:65:2265:37:1318:-85.1865,0,-172.42	0/1:50:20,30:20:716:30:1072:-80.1213,0,-49.7162	0/0:71:71,0:71:2476:0:0:0,-21.3731,-222.981	0/0:97:97,0:97:3386:0:0:0,-29.1999,-304.592
chr06	1332838	.	T	A	25967.9	PASS	AB=0.489475;ABP=6.07274;AC=47;AF=0.25;AN=188;AO=1576;CIGAR=1X;DP=7373;DPB=7373;DPRA=0.994703;EPP=3425.25;EPPR=12558.5;GTI=5;LEN=1;MEANALT=1.01923;MQM=59.4873;MQMR=59.9783;NS=94;NUMALT=1;ODDS=1.49592;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56337;QR=207162;RO=5794;RPL=0;RPP=3425.25;RPPR=12558.5;RPR=1576;RUN=1;SAF=0;SAP=3425.25;SAR=1576;SRF=0;SRP=12584.5;SRR=5794;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:20,6:20:712:6:216:-11.9637,0,-56.5799	0/0:177:176,0:176:6301:0:0:0,-52.9813,-566.821	0/1:271:122,149:122:4353:149:5307:-395.996,0,-310.365	0/0:137:135,2:135:4821:2:72:0,-34.4044,-427.208	0/1:37:22,15:22:788:15:536:-37.4367,0,-59.2477	0/1:48:25,23:25:892:23:828:-60.3947,0,-66.0804	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:125:55,70:55:1968:70:2496:-187.225,0,-139.766	0/1:42:17,25:17:612:25:881:-66.9603,0,-42.7702	0/1:104:51,53:51:1824:53:1885:-138.618,0,-133.134	0/1:43:25,18:25:900:18:629:-43.9332,0,-68.3767	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:64:33,31:33:1188:31:1112:-81.0896,0,-87.9627	0/1:67:37,30:37:1324:30:1068:-76.2515,0,-99.2931	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/1:35:14,21:14:500:21:756:-57.8312,0,-34.8001	0/0:87:87,0:87:3104:0:0:0,-26.1896,-279.588	0/1:54:31,23:31:1107:23:828:-58.5885,0,-83.6845	0/0:26:26,0:26:912:0:0:0,-7.82678,-82.3931	0/0:145:144,1:144:5124:1:36:0,-40.0511,-457.705	0/1:98:50,48:50:1788:48:1712:-124.298,0,-131.702	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/1:31:14,17:14:500:17:608:-45.5284,0,-36.0042	0/1:90:45,45:45:1601:45:1611:-118.185,0,-117.285	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:203:203,0:203:7262:0:0:0,-61.1091,-653.629	0/1:169:97,72:97:3480:72:2584:-181.89,0,-262.537	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:174:87,87:87:3120:87:3124:-228.942,0,-228.647	0/1:187:90,97:90:3232:97:3459:-254.478,0,-234.808	0/0:70:69,1:69:2480:1:36:0,-17.4738,-219.855	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:118:59,59:59:2116:59:2112:-154.798,0,-155.187	0/0:180:180,0:180:6445:0:0:0,-54.1854,-580.135	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:206:205,1:205:7316:1:36:0,-58.4139,-654.89	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5457	0/1:113:64,49:64:2277:49:1749:-123.653,0,-171.174	0/1:53:28,25:28:1000:25:900:-65.3558,0,-74.3608	0/1:38:18,20:18:648:20:716:-53.3286,0,-47.2127	0/1:32:13,19:13:468:19:684:-52.2574,0,-32.8258	0/0:133:133,0:133:4715:0:0:0,-40.037,-424.505	0/0:140:139,0:139:4984:0:0:0,-41.8432,-448.347	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.121	0/1:168:94,74:94:3380:74:2652:-188.303,0,-253.841	0/1:96:44,52:44:1567:52:1868:-139.415,0,-112.422	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:182:182,0:182:6500:0:0:0,-54.7875,-585.084	0/1:37:23,14:23:824:14:500:-34.1981,0,-63.3452	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	0/1:113:62,51:62:2208:51:1828:-130.695,0,-164.969	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:189:189,0:189:6764:0:0:0,-56.8947,-608.831	0/0:164:160,4:160:5699:4:142:0,-36.277,-499.934	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:84:82,2:82:2948:2:72:0,-18.4498,-258.716	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/0:74:73,1:73:2616:1:36:0,-18.6779,-232.089	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/1:29:14,15:14:496:15:540:-40.2063,0,-36.2444	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.486	0/1:57:32,25:32:1140:25:892:-63.441,0,-85.7505	0/1:121:62,59:62:2220:59:2108:-153.456,0,-163.64	0/1:155:82,73:82:2917:73:2624:-189.73,0,-216.105	0/0:106:106,0:106:3778:0:0:0,-31.9092,-340.217	0/0:112:112,0:112:4001:0:0:0,-33.7154,-360.278	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/0:119:119,0:119:4253:0:0:0,-35.8226,-382.947	0/0:109:109,0:109:3876:0:0:0,-32.8123,-349.034	0/1:107:51,56:51:1828:56:2002:-148.092,0,-132.591	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:58:36,22:36:1292:22:777:-52.7324,0,-99.124	0/0:100:100,0:100:3546:0:0:0,-30.103,-319.348	0/1:36:21,15:21:752:15:532:-37.1047,0,-57.1692	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/1:44:19,25:19:684:25:871:-65.426,0,-48.645	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:57:31,26:31:1112:26:936:-67.4008,0,-83.2326	0/1:42:14,27:14:504:27:972:-74.9756,0,-32.996	0/0:75:75,0:75:2673:0:0:0,-22.5772,-239.625	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989
chr06	1332865	.	C	T	26081.1	PASS	AB=0.492173;ABP=4.70995;AC=47;AF=0.25;AN=188;AO=1591;CIGAR=1X;DP=7388;DPB=7388;DPRA=0.969399;EPP=3457.82;EPPR=12591;GTI=2;LEN=1;MEANALT=1;MQM=59.4745;MQMR=59.98;NS=94;NUMALT=1;ODDS=0.155979;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56816;QR=206872;RO=5797;RPL=1591;RPP=3457.82;RPPR=12591;RPR=0;RUN=1;SAF=0;SAP=3457.82;SAR=1591;SRF=0;SRP=12591;SRR=5797;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:19,8:19:669:8:280:-17.4115,0,-52.4061	0/0:177:177,0:177:6322:0:0:0,-53.2823,-569.07	0/1:275:121,154:121:4336:154:5494:-411.563,0,-307.632	0/0:139:137,2:137:4886:2:68:0,-35.3855,-433.433	0/1:36:21,15:21:748:15:540:-38.0995,0,-56.2487	0/1:51:26,25:26:936:25:877:-63.8927,0,-69.1371	0/0:84:84,0:84:2986:0:0:0,-25.2865,-268.97	0/1:121:55,66:55:1957:66:2360:-176.198,0,-139.979	0/1:44:19,25:19:684:25:896:-67.7127,0,-48.645	0/1:103:51,52:51:1820:52:1833:-134.241,0,-133.075	0/1:44:26,18:26:909:18:648:-45.3503,0,-68.8781	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:64:33,31:33:1180:31:1116:-81.45,0,-87.2421	0/1:65:35,30:35:1256:30:1072:-77.2125,0,-93.7783	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:38:14,24:14:496:24:860:-66.272,0,-33.5351	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.899	0/1:53:30,23:30:1072:23:824:-58.5287,0,-80.8379	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:146:145,1:145:5170:1:36:0,-40.3521,-461.841	0/1:98:52,46:52:1868:46:1648:-118.97,0,-138.898	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/1:32:14,18:14:504:18:634:-47.6959,0,-36.0651	0/1:90:45,45:45:1570:45:1604:-117.556,0,-114.494	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:205:205,0:205:7295:0:0:0,-61.7111,-656.601	0/1:173:99,74:99:3533:74:2621:-184,0,-266.1	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/1:176:88,88:88:3160:88:3152:-230.876,0,-231.643	0/1:190:90,100:90:3185:100:3568:-263.323,0,-229.676	0/0:68:67,1:67:2400:1:36:0,-16.8718,-212.659	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:118:58,60:58:2079:60:2141:-157.404,0,-151.858	0/0:179:179,0:179:6399:0:0:0,-53.8844,-575.999	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	1/1:2:0,2:0:0:2:66:-6.26795,-0.60206,0	0/0:204:203,1:203:7261:1:36:0,-57.8118,-649.929	0/0:27:26,1:26:928:1:36:0,-4.54476,-80.2552	0/1:112:63,49:63:2260:49:1760:-124.946,0,-169.947	0/1:53:28,25:28:996:25:900:-65.3558,0,-74.0003	0/1:39:18,21:18:648:21:756:-56.6271,0,-46.9117	0/1:33:14,19:14:504:19:669:-50.599,0,-35.7632	0/0:132:132,0:132:4721:0:0:0,-39.736,-425.037	0/0:139:139,0:139:4977:0:0:0,-41.8432,-448.075	0/0:75:75,0:75:2654:0:0:0,-22.5772,-239.104	0/1:166:94,72:94:3369:72:2583:-182.705,0,-253.453	0/1:91:42,49:42:1469:49:1721:-127.694,0,-105.106	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:186:186,0:186:6673:0:0:0,-55.9916,-600.643	0/1:37:22,15:22:788:15:517:-35.6867,0,-60.1067	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:111:60,51:60:2148:51:1832:-131.657,0,-160.173	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:70:70,0:70:2447:0:0:0,-21.0721,-220.482	0/0:75:75,0:75:2681:0:0:0,-22.5772,-241.533	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:193:193,0:193:6887:0:0:0,-58.0988,-619.895	0/0:166:162,4:162:5732:4:140:0,-37.0839,-503.11	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.692	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:84:82,2:82:2906:2:72:0,-18.4498,-254.937	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:75:74,1:74:2652:1:36:0,-18.979,-235.328	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:29:14,15:14:500:15:540:-40.2063,0,-36.6063	0/0:100:100,0:100:3561:0:0:0,-30.103,-320.698	0/1:61:33,28:33:1184:28:1004:-72.313,0,-88.5055	0/1:121:64,57:64:2277:57:2040:-147.358,0,-168.766	0/1:158:82,76:82:2952:76:2724:-197.838,0,-218.35	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.684	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:120:120,0:120:4266:0:0:0,-36.1236,-384.117	0/0:114:114,0:114:4045:0:0:0,-34.3174,-364.236	0/1:106:50,56:50:1792:56:2008:-148.913,0,-129.653	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:57:36,21:36:1288:21:756:-51.1346,0,-99.0649	0/0:98:98,0:98:3482:0:0:0,-29.5009,-313.59	0/1:35:20,15:20:720:15:540:-38.1292,0,-54.5927	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/1:44:19,25:19:684:25:896:-67.6333,0,-48.645	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:57:30,27:30:1076:27:968:-70.268,0,-79.9941	0/1:42:14,28:14:495:28:1008:-78.2728,0,-32.2398	0/0:75:75,0:75:2658:0:0:0,-22.5772,-238.607	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.007
chr06	1353572	.	A	G	25452.3	PASS	AB=0.494241;ABP=3.86065;AC=43;AF=0.231183;AN=186;AO=1467;CIGAR=1X;DP=6515;DPB=6515;DPRA=1.04316;EPP=3171.21;EPPR=10893.1;GTI=1;LEN=1;MEANALT=1.02;MQM=59.8787;MQMR=59.9661;NS=93;NUMALT=1;ODDS=1.27074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52078;QR=180976;RO=5047;RPL=1432;RPP=2891.81;RPPR=10177.9;RPR=35;RUN=1;SAF=1434;SAP=2908.37;SAR=33;SRF=4961;SRP=10228.2;SRR=86;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:19,9:19:684:9:323:-20.9855,0,-53.4615	0/0:134:134,0:134:4795:0:0:0,-40.338,-431.701	0/1:93:48,45:48:1724:45:1616:-117.715,0,-127.445	0/0:89:88,1:88:3156:1:36:0,-23.1934,-280.666	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:22:10,12:10:351:12:428:-32.2361,0,-25.304	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:119:68,51:68:2448:51:1821:-128.347,0,-184.262	0/1:63:40,22:40:1436:22:777:-51.2286,0,-110.514	0/1:87:55,32:55:1968:32:1131:-75.9079,0,-151.205	0/1:51:33,18:33:1188:18:648:-43.2994,0,-91.8761	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.822	0/1:81:32,49:32:1152:49:1747:-132.64,0,-79.6067	0/1:69:36,33:36:1284:33:1157:-83.6627,0,-95.0923	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:45:18,27:18:648:27:960:-73.1699,0,-45.1055	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.575	0/1:46:22,24:22:788:24:849:-62.8804,0,-57.3974	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:126:126,0:126:4528:0:0:0,-37.9298,-407.014	0/1:95:49,46:49:1749:46:1634:-118.751,0,-129.094	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:50:29,21:29:1040:21:748:-52.5938,0,-78.8629	0/1:63:20,43:20:720:43:1540:-119.9,0,-46.1639	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871	0/1:161:93,68:93:3340:68:2409:-168.031,0,-252.351	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:99:37,62:37:1332:62:2186:-167.2,0,-90.3804	0/1:103:42,61:42:1495:61:2164:-164.021,0,-103.838	0/0:85:83,2:83:2976:2:72:0,-18.7508,-261.236	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:200:109,91:109:3912:91:3190:-227.118,0,-292.066	0/0:65:64,1:64:2296:1:36:0,-15.9687,-203.303	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.546	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:115:114,1:114:4083:1:36:0,-31.0202,-364.057	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:79:40,39:40:1440:39:1378:-100.535,0,-106.116	0/1:77:41,36:41:1476:36:1282:-92.5038,0,-109.957	0/1:60:23,37:23:828:37:1309:-100.048,0,-56.7819	0/1:57:35,22:35:1260:22:792:-54.447,0,-96.5468	0/0:101:101,0:101:3596:0:0:0,-30.404,-323.845	0/0:114:114,0:114:4088:0:0:0,-34.3174,-368.105	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/1:93:36,57:36:1296:57:2027:-154.706,0,-88.9481	0/1:71:30,41:30:1076:41:1472:-111.403,0,-75.7797	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.812	0/1:41:18,23:18:644:23:824:-62.1411,0,-45.9484	0/1:18:9,9:9:324:9:324:-24.0849,0,-24.0873	0/1:89:40,49:40:1436:49:1719:-128.196,0,-102.746	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5571	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:4:2,2:2:72:2:63:-4.77903,0,-5.6326	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:129:129,0:129:4619:0:0:0,-38.8329,-415.873	.:.:.:.:.:.:.:.	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:88:87,1:87:3103:1:36:0,-22.8924,-275.899	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:92:92,0:92:3299:0:0:0,-27.6948,-297.126	0/0:111:111,0:111:3973:0:0:0,-33.4143,-357.758	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.335	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:148:148,0:148:5304:0:0:0,-44.5524,-477.494	0/1:67:37,30:37:1332:30:1072:-76.595,0,-100.013	0/1:130:79,51:79:2812:51:1828:-125.667,0,-214.185	0/1:146:75,71:75:2673:71:2523:-183.372,0,-196.864	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:88:87,1:87:3124:1:36:0,-22.8924,-277.787	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:89:88,1:88:3137:1:36:0,-23.1934,-278.952	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:110:47,63:47:1688:63:2222:-167.127,0,-119.094	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.727	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.705	0/1:66:37,29:37:1328:29:1036:-73.6859,0,-99.9543	0/0:138:138,0:138:4968:0:0:0,-41.5421,-447.266	0/1:48:30,18:30:1072:18:635:-43.0275,0,-82.343	0/0:74:74,0:74:2655:0:0:0,-22.2762,-239.195	0/1:65:37,28:37:1328:28:994:-70.2074,0,-100.255	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:133:64,69:64:2296:69:2445:-180.267,0,-166.864	0/1:57:13,44:13:468:44:1545:-122.18,0,-25.3009	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.832	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.728
chr06	1353689	.	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chr06	1387428	.	A	G	13681.9	PASS	AB=0.491879;ABP=3.99779;AC=44;AF=0.236559;AN=186;AO=855;CIGAR=1X;DP=3501;DPB=3501;DPRA=1.10147;EPP=1825.04;EPPR=5748.73;GTI=0;LEN=1;MEANALT=1;MQM=59.9661;MQMR=59.9977;NS=93;NUMALT=1;ODDS=0.331328;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30062;QR=94023;RO=2646;RPL=3;RPP=1833.65;RPPR=5731.37;RPR=852;RUN=1;SAF=1;SAP=1850.94;SAR=854;SRF=2;SRP=5731.37;SRR=2644;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:65:31,34:31:1112:34:1183:-87.2041,0,-80.8244	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/1:24:11,13:11:392:13:464:-34.8728,0,-28.3953	0/1:11:1,10:1:36:10:351:-28.6153,0,-0.286945	0/0:36:36,0:36:1271:0:0:0,-10.8371,-114.692	0/1:32:23,9:23:815:9:315:-19.0543,0,-64.0378	0/1:20:16,4:16:564:4:135:-6.46191,0,-45.0697	0/1:42:24,18:24:852:18:618:-43.295,0,-64.3571	0/1:32:11,21:11:396:21:752:-58.3733,0,-26.3498	0/0:42:42,0:42:1482:0:0:0,-12.6433,-133.673	0/1:31:21,10:21:748:10:360:-23.4124,0,-58.3134	0/1:29:19,10:19:665:10:348:-22.9247,0,-51.4429	0/0:43:42,1:42:1500:1:36:0,-9.34601,-131.696	0/1:40:22,18:22:780:18:640:-45.8881,0,-58.4818	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:10:8,2:8:288:2:68:-3.44741,0,-23.2571	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.575	0/1:44:23,21:23:820:21:743:-53.948,0,-60.8772	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.821	0/1:38:16,22:16:572:22:780:-59.0839,0,-40.3743	0/1:43:27,16:27:959:16:576:-39.2307,0,-73.6811	0/0:44:43,1:43:1524:1:36:0,-9.64704,-133.855	0/0:109:109,0:109:3832:0:0:0,-32.8123,-345.078	0/1:100:46,54:46:1644:54:1899:-141.084,0,-118.146	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:112:50,62:50:1762:62:2134:-158.609,0,-125.144	0/1:42:23,19:23:812:19:680:-48.8859,0,-60.7577	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:103:49,54:49:1760:54:1902:-140.45,0,-127.678	0/0:41:41,0:41:1450:0:0:0,-12.3422,-130.794	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	.:.:.:.:.:.:.:.	0/0:41:39,2:39:1383:2:72:0,-5.50551,-117.931	0/0:32:31,1:31:1088:1:32:0,-6.43365,-95.0299	0/1:118:63,55:63:2251:55:1968:-141.865,0,-167.331	0/1:28:17,11:17:608:11:374:-25.5576,0,-46.6232	0/1:38:20,18:20:697:18:632:-45.7676,0,-51.6115	0/1:81:31,50:31:1116:50:1784:-136.459,0,-76.3683	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:92:92,0:92:3283:0:0:0,-27.6948,-295.69	0/0:40:40,0:40:1400:0:0:0,-12.0412,-126.294	0/1:24:8,16:8:284:16:576:-44.9503,0,-18.6786	0/1:67:38,29:38:1344:29:1019:-71.8523,0,-101.091	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/1:22:16,6:16:572:6:203:-11.9785,0,-45.1908	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:44:27,17:27:955:17:595:-40.6281,0,-73.0195	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/1:3:1,2:1:36:2:72:-5.93321,0,-2.69518	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:94:94,0:94:3327:0:0:0,-28.2968,-299.65	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:34:33,1:33:1176:1:27:0,-7.53524,-103.448	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:48:47,1:47:1680:1:36:0,-10.8512,-147.889	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:42:42,0:42:1488:0:0:0,-12.6433,-134.215	0/1:20:10,10:10:360:10:352:-25.9976,0,-26.7237	0/0:14:14,0:14:482:0:0:0,-4.21442,-43.7061	0/1:21:9,12:9:320:12:428:-32.5372,0,-22.8207	0/1:53:24,29:24:864:29:1004:-74.713,0,-62.128	0/1:53:26,27:26:932:27:952:-70.0406,0,-68.2443	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/1:86:39,47:39:1381:47:1654:-123.253,0,-98.6982	0/0:55:55,0:55:1924:0:0:0,-16.5566,-173.434	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:24:13,11:13:460:11:379:-27.2158,0,-34.5107	0/0:72:72,0:72:2559:0:0:0,-21.6742,-230.56	0/1:10:7,3:7:252:3:104:-6.69251,0,-20.0187	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/1:34:20,14:20:712:14:487:-33.9217,0,-54.1716	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:78:37,41:37:1328:41:1429:-105.423,0,-96.3419	0/1:46:19,27:19:662:27:939:-70.9753,0,-46.055	0/0:26:26,0:26:916:0:0:0,-7.82678,-82.7565	0/0:55:55,0:55:1930:0:0:0,-16.5566,-173.976
chr06	1387453	.	CTTC	TTTC,TTTT	84353.6	PASS	AB=0.497433,0.501027;ABP=3.12177,3.02814;AC=141,45;AF=0.758065,0.241935;AN=186;AO=2962,983;CIGAR=1X3M,1X2M1X;DP=3948;DPB=3948;DPRA=0,1.01688;EPP=6408.88,2128.89;EPPR=0;GTI=0;LEN=1,4;MEANALT=1.56989,2.06;MQM=60,59.9217;MQMR=0;NS=93;NUMALT=2;ODDS=0.40359;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=105624,34555;QR=0;RO=0;RPL=3,1;RPP=6408.88,2128.89;RPPR=0;RPR=2959,982;RUN=1,1;SAF=0,0;SAP=6434.91,2137.57;SAR=2962,983;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,14,13:0:0:14,13:500,461:-78.6784,-37.9124,-33.6979,-41.1218,0,-37.2084	1/1:36:0,36,0:0:0:36,0:1281,0:-115.591,-10.8371,0,-115.591,-10.8371,-115.591	1/2:94:0,44,50:0:0:44,50:1565,1782:-273.15,-145.611,-132.366,-127.894,0,-112.843	1/1:58:0,58,0:0:0:58,0:2084,0:-187.83,-17.4597,0,-187.83,-17.4597,-187.83	1/2:25:0,10,15:0:0:10,15:341,526:-70.8172,-43.1544,-40.1441,-28.0075,0,-23.492	1/2:22:0,5,17:0:0:5,17:176,606:-64.0806,-49.7536,-48.2484,-14.6799,0,-9.56236	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/2:50:0,32,18:0:0:32,18:1137,639:-145.07,-52.4205,-42.7875,-93.004,0,-87.5855	1/2:38:0,23,15:0:0:23,15:828,525:-110.631,-43.0644,-36.1407,-67.9204,0,-63.405	1/2:42:0,24,18:0:0:24,18:830,638:-119.767,-52.3302,-45.1055,-67.7876,0,-62.3691	1/2:32:0,11,21:0:0:11,21:396,739:-92.8249,-60.5105,-57.1992,-32.6714,0,-26.3498	1/1:68:0,68,0:0:0:68,0:2425,0:-218.504,-20.47,0,-218.504,-20.47,-218.504	1/2:54:0,30,24:0:0:30,24:1080,860:-158.621,-70.4973,-61.4664,-88.4823,0,-81.2576	1/2:28:0,19,8:0:0:19,8:680,278:-78.0487,-22.5908,-16.8712,-55.4499,0,-53.0416	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/2:43:0,22,21:0:0:22,21:792,746:-125.769,-61.1433,-54.5206,-64.983,0,-58.6614	1/1:25:0,25,0:0:0:25,0:892,0:-80.5997,-7.52575,0,-80.5997,-7.52575,-80.5997	1/2:19:0,12,7:0:0:12,7:432,250:-55.9903,-20.7395,-17.1272,-35.6088,0,-33.5016	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:35:0,35,0:0:0:35,0:1245,0:-112.353,-10.5361,0,-112.353,-10.5361,-112.353	1/2:43:0,20,23:0:0:20,23:716,802:-123.968,-65.5744,-59.5538,-58.7471,0,-51.8234	1/1:61:0,61,0:0:0:61,0:2151,0:-193.852,-18.3628,0,-193.852,-18.3628,-193.852	1/2:39:0,16,23:0:0:16,23:572,808:-112.758,-66.1159,-61.2995,-46.9969,0,-40.0733	1/2:44:0,28,16:0:0:28,16:959,549:-122.76,-44.917,-36.4882,-78.1855,0,-73.369	1/1:44:0,43,1:0:0:43,1:1540,32:-138.572,-12.9443,0,-135.995,-10.046,-135.694	1/1:105:0,105,0:0:0:105,0:3745,0:-337.25,-31.6082,0,-337.25,-31.6082,-337.25	1/2:103:0,48,54:0:0:48,54:1724,1906:-295.841,-155.201,-140.752,-140.636,0,-124.381	1/1:19:0,19,0:0:0:19,0:667,0:-60.3546,-5.71957,0,-60.3546,-5.71957,-60.3546	1/2:113:0,50,63:0:0:50,63:1766,2206:-323.633,-179.817,-164.766,-144.168,0,-125.203	1/2:40:0,22,18:0:0:22,18:784,631:-115.606,-51.6975,-45.0748,-64.2613,0,-58.8427	1/1:49:0,49,0:0:0:49,0:1733,0:-156.253,-14.7505,0,-156.253,-14.7505,-156.253	1/2:11:0,4,7:0:0:4,7:140,246:-31.7649,-20.3748,-19.1707,-11.7405,0,-9.63325	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:13:0,9,4:0:0:9,4:324,142:-38.3653,-11.9251,-9.21582,-26.7966,0,-25.5925	1/1:23:0,23,0:0:0:23,0:807,0:-72.9492,-6.92369,0,-72.9492,-6.92369,-72.9492	1/2:106:0,51,55:0:0:51,55:1809,1953:-306.871,-159.489,-144.136,-147.737,0,-131.18	1/1:43:0,43,0:0:0:43,0:1506,0:-135.829,-12.9443,0,-135.829,-12.9443,-135.829	1/1:29:0,29,0:0:0:29,0:1029,0:-92.9211,-8.72987,0,-92.9211,-8.72987,-92.9211	.:.:.:.:.:.:.:.	1/1:40:0,38,2:0:0:38,2:1364,71:-122.706,-11.4391,0,-116.921,-5.29914,-116.319	1/1:32:0,31,1:0:0:31,1:1116,31:-100.44,-9.33193,0,-97.9533,-6.53351,-97.6522	1/2:122:0,66,56:0:0:66,56:2355,1917:-347.938,-155.946,-136.078,-192.341,0,-175.483	1/2:28:0,17,11:0:0:17,11:612,389:-81.9765,-32.0366,-26.919,-50.2959,0,-46.9846	1/2:40:0,20,20:0:0:20,20:705,716:-116.143,-58.7459,-52.7253,-57.7522,0,-51.7316	1/2:84:0,32,52:0:0:32,52:1148,1829:-242.878,-149.237,-139.604,-93.9969,0,-78.3433	1/1:33:0,33,0:0:0:33,0:1173,0:-105.876,-9.93399,0,-105.876,-9.93399,-105.876	1/1:97:0,97,0:0:0:97,0:3465,0:-312.061,-29.1999,0,-312.061,-29.1999,-312.061	1/1:42:0,42,0:0:0:42,0:1468,0:-132.412,-12.6433,0,-132.412,-12.6433,-132.412	1/2:24:0,7,17:0:0:7,17:252,594:-69.2337,-48.6687,-46.5615,-20.9217,0,-15.8042	1/2:69:0,38,30:0:0:38,30:1356,1044:-195.485,-84.9351,-73.4959,-110.6,0,-101.569	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:55:0,55,0:0:0:55,0:1964,0:-177.035,-16.5567,0,-177.035,-16.5567,-177.035	1/2:22:0,16,6:0:0:16,6:572,215:-64.532,-17.893,-13.0765,-46.9969,0,-45.1908	1/2:15:0,8,7:0:0:8,7:288,240:-43.3354,-19.827,-17.4187,-23.8592,0,-21.752	1/2:46:0,27,19:0:0:27,19:964,661:-132.552,-53.9545,-45.8267,-78.9484,0,-73.2289	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/2:8:0,3,5:0:0:3,5:108,180:-23.8592,-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chr06	1412803	.	G	A	23589.2	PASS	AB=0.502331;ABP=3.14188;AC=44;AF=0.234043;AN=188;AO=1406;CIGAR=1X;DP=6185;DPB=6185;DPRA=1.04775;EPP=3047.42;EPPR=10369.6;GTI=0;LEN=1;MEANALT=1.06122;MQM=59.9993;MQMR=59.9943;NS=94;NUMALT=1;ODDS=1.39395;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50310;QR=170406;RO=4774;RPL=0;RPP=3056.1;RPPR=10369.6;RPR=1406;RUN=1;SAF=1405;SAP=3047.42;SAR=1;SRF=4774;SRP=10369.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:22,14:22:788:14:504:-34.861,0,-60.4077	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/1:93:53,40:53:1908:40:1432:-101.182,0,-144.002	0/0:123:123,0:123:4392:0:0:0,-37.0267,-395.454	0/1:70:47,22:47:1688:22:792:-50.4748,0,-131.076	0/1:59:37,22:37:1332:22:788:-53.484,0,-102.422	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.55	0/1:95:43,51:43:1527:51:1828:-136.144,0,-109.066	0/1:68:39,29:39:1392:29:1032:-72.7229,0,-105.109	0/1:50:25,25:25:892:25:900:-66.2695,0,-65.5482	0/1:52:27,25:27:964:25:892:-64.9461,0,-71.4233	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:49:29,20:29:1040:20:712:-49.6562,0,-79.1639	0/1:57:15,42:15:540:42:1497:-117.864,0,-31.7778	0/0:76:76,0:76:2706:0:0:0,-22.8783,-243.783	0/1:42:21,21:21:756:21:756:-55.724,0,-55.724	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:41:14,27:14:496:27:968:-75.0951,0,-32.632	0/0:106:106,0:106:3816:0:0:0,-31.9092,-343.635	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:130:59,70:59:2116:70:2520:-187.858,0,-151.516	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:55:22,33:22:788:33:1170:-89.0488,0,-54.6881	0/1:71:31,40:31:1112:40:1436:-108.164,0,-79.0182	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:193:193,0:193:6882:0:0:0,-58.0988,-619.448	0/1:99:46,53:46:1621:53:1904:-141.836,0,-116.375	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:134:54,80:54:1932:80:2853:-216.669,0,-133.819	0/1:55:22,33:22:792:33:1184:-90.3117,0,-55.049	0/0:90:90,0:90:3189:0:0:0,-27.0927,-287.234	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:137:74,63:74:2648:63:2264:-162.781,0,-197.325	0/0:130:129,1:129:4609:1:36:0,-35.5356,-411.375	0/0:77:77,0:77:2746:0:0:0,-23.1793,-247.381	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:111:111,0:111:3922:0:0:0,-33.4143,-353.174	0/0:37:37,0:37:1310:0:0:0,-11.1381,-118.2	0/1:102:59,43:59:2101:43:1513:-105.756,0,-158.653	0/1:55:31,24:31:1099:24:864:-61.5259,0,-82.6628	0/1:46:25,21:25:896:21:756:-54.5198,0,-67.113	0/1:52:21,31:21:733:31:1108:-84.3774,0,-50.6361	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:113:113,0:113:4014:0:0:0,-34.0164,-361.448	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/1:130:63,67:63:2252:67:2408:-177.842,0,-163.809	0/1:104:45,59:45:1589:59:2124:-160.121,0,-111.991	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:87:86,1:86:3092:1:36:0,-22.5913,-274.909	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:115:55,60:55:1968:60:2144:-158.609,0,-142.777	0/0:13:12,0:12:428:0:0:0,-3.61236,-38.4992	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.658	0/0:86:85,1:85:3039:1:36:0,-22.2903,-270.141	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:138:137,0:137:4880:0:0:0,-41.2411,-438.993	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.186	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/0:59:58,1:58:2076:1:36:0,-14.1625,-183.512	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.717	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/1:55:29,26:29:1040:26:932:-67.6422,0,-77.3577	0/1:83:48,35:48:1670:35:1252:-87.999,0,-125.597	0/1:124:69,55:69:2460:55:1961:-139.436,0,-183.899	0/0:109:109,0:109:3893:0:0:0,-32.8123,-350.563	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/1:16:11,5:11:396:5:165:-10.3571,0,-31.1663	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/1:139:70,69:70:2500:69:2459:-179.72,0,-183.41	0/0:92:92,0:92:3283:0:0:0,-27.6948,-295.69	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:69:36,33:36:1278:33:1184:-86.0972,0,-94.5506	0/0:145:144,1:144:5156:1:36:0,-40.0511,-460.583	0/1:39:20,19:20:716:19:668:-48.7055,0,-53.0275	0/0:71:71,0:71:2519:0:0:0,-21.3731,-226.962	0/1:55:23,32:23:820:32:1144:-86.7129,0,-57.5659	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:96:50,46:50:1779:46:1640:-118.989,0,-131.493	0/1:52:21,31:21:747:31:1116:-85.0981,0,-51.9007	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064
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chr06	1457390	.	T	G	26466.6	PASS	AB=0.300493;ABP=2596.29;AC=39;AF=0.207447;AN=188;AO=2273;CIGAR=1X;DP=20005;DPB=20005;DPRA=0.90852;EPP=4930.09;EPPR=38498.9;GTI=3;LEN=1;MEANALT=1.06;MQM=60;MQMR=42.9024;NS=94;NUMALT=1;ODDS=9.19095;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80572;QR=632192;RO=17728;RPL=2273;RPP=4938.77;RPPR=301.863;RPR=0;RUN=1;SAF=2272;SAP=4930.09;SAR=1;SRF=8083;SRP=301.863;SRR=9645;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:89:61,28:61:2167:28:1000:-63.5237,0,-134.478	0/0:365:365,0:365:13033:0:0:0,-109.876,-991.445	0/1:251:186,65:186:6631:65:2293:-131.072,0,-424.57	0/0:594:594,0:594:21115:0:0:0,-178.812,-1668.28	0/1:144:110,34:110:3939:34:1212:-66.038,0,-259.522	0/1:88:50,38:50:1771:38:1324:-92.9662,0,-101.27	0/0:330:330,0:330:11783:0:0:0,-99.3399,-942.13	0/1:236:170,66:170:6045:66:2338:-139.636,0,-371.584	0/1:168:118,50:118:4199:50:1752:-107.388,0,-255.586	0/1:180:148,32:148:5312:32:1148:-49.4444,0,-372.606	0/1:92:54,38:54:1927:38:1347:-93.8347,0,-127.627	0/0:174:174,0:174:6143:0:0:0,-52.3792,-478.416	0/1:115:66,49:66:2312:49:1756:-123.706,0,-148.51	0/1:117:80,37:80:2852:37:1296:-81.7178,0,-196.823	0/0:159:159,0:159:5681:0:0:0,-47.8638,-461.081	0/1:88:51,37:51:1796:37:1292:-90.0875,0,-116.618	0/0:161:160,1:160:5719:1:36:0,-44.8676,-450.402	0/1:85:55,30:55:1964:30:1072:-71.2049,0,-128.001	0/0:99:99,0:99:3542:0:0:0,-29.802,-271.797	0/0:641:641,0:641:22936:0:0:0,-192.96,-1790.61	0/1:337:223,114:223:7984:114:4061:-264.23,0,-506.692	0/0:197:197,0:197:7034:0:0:0,-59.3029,-565.48	0/1:102:76,26:76:2728:26:936:-53.8544,0,-189.951	0/1:302:211,90:211:7527:90:3187:-196.086,0,-491.95	0/0:178:178,0:178:6322:0:0:0,-53.5833,-507.202	0/0:697:697,0:697:24916:0:0:0,-209.818,-2049.42	0/1:480:338,142:338:12063:142:5065:-311.498,0,-841.391	0/0:78:78,0:78:2780:0:0:0,-23.4803,-218.538	0/1:626:462,163:462:16500:163:5778:-331.634,0,-1148.57	0/1:212:156,56:156:5588:56:1995:-116.005,0,-370.214	0/0:244:242,2:242:8610:2:72:0,-66.6146,-696.068	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.01775	0/0:32:32,0:32:1144:0:0:0,-9.63296,-81.0624	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:21:16,5:16:576:5:180:-10.2304,0,-37.468	0/0:22:22,0:22:788:0:0:0,-6.62266,-55.2583	0/1:293:195,98:195:6957:98:3491:-226.2,0,-482.021	0/0:348:348,0:348:12349:0:0:0,-104.758,-973.364	0/0:142:142,0:142:5067:0:0:0,-42.7463,-389.162	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.7362	0/0:432:431,1:431:15376:1:36:0,-126.447,-1209.01	0/0:82:82,0:82:2904:0:0:0,-24.6845,-213.82	0/1:309:223,86:223:7924:86:3018:-178.833,0,-518.821	0/1:129:88,41:88:3127:41:1451:-92.0523,0,-219.865	0/1:108:67,41:67:2377:41:1467:-99.8141,0,-158.345	0/1:178:135,43:135:4829:43:1531:-84.499,0,-345.853	0/0:346:346,0:346:12344:0:0:0,-104.156,-932.712	0/0:365:365,0:365:13002:0:0:0,-109.876,-1033.13	0/0:287:286,1:286:10185:1:36:0,-82.7973,-822.777	0/1:275:205,70:205:7313:70:2491:-141.66,0,-508.86	0/1:275:209,66:209:7457:66:2345:-128.525,0,-518.748	0/0:12:12,0:12:432:0:0:0,-3.61236,-31.6401	0/0:630:630,0:630:22467:0:0:0,-189.649,-1801.24	0/1:44:23,21:23:812:21:748:-54.4,0,-55.6881	0/0:22:20,2:20:716:2:68:0,-0.164951,-39.3771	0/1:272:184,88:184:6551:88:3081:-195.639,0,-423.559	0/0:123:123,0:123:4416:0:0:0,-37.0267,-347.467	0/0:8:8,0:8:288:0:0:0,-2.40824,-22.7943	0/0:38:35,3:35:1252:3:108:0,-1.36397,-87.6864	0/0:195:195,0:195:6934:0:0:0,-58.7008,-555.485	0/0:209:209,0:209:7389:0:0:0,-62.9153,-591.738	0/0:12:11,1:11:396:1:36:0,-0.0140849,-26.6939	0/0:396:396,0:396:14192:0:0:0,-119.208,-1150.83	0/0:485:482,3:482:17180:3:108:0,-135.924,-1407.83	0/0:180:180,0:180:6420:0:0:0,-54.1854,-493.675	0/0:248:248,0:248:8804:0:0:0,-74.6554,-702.664	0/0:398:397,0:397:14178:0:0:0,-119.509,-1100.23	0/0:235:235,0:235:8371:0:0:0,-70.742,-673.596	0/0:62:62,0:62:2220:0:0:0,-18.6639,-179.982	0/0:234:234,0:234:8362:0:0:0,-70.441,-637.517	0/0:174:174,0:174:6188:0:0:0,-52.3792,-514.497	0/1:24:21,3:21:752:3:108:-2.85045,0,-53.2303	0/0:281:281,0:281:10018:0:0:0,-84.5894,-760.061	0/1:131:87,44:87:3096:44:1568:-101.977,0,-197.324	0/1:309:205,104:205:7329:104:3669:-237.397,0,-475.043	0/1:355:245,110:245:8783:110:3886:-243.072,0,-606.925	0/0:248:248,0:248:8851:0:0:0,-74.6554,-661.509	0/0:297:295,2:295:10575:2:72:0,-82.5692,-775.905	0/0:23:23,0:23:824:0:0:0,-6.92369,-55.991	0/0:272:272,0:272:9706:0:0:0,-81.8802,-751.857	0/0:385:383,2:383:13652:2:72:0,-109.06,-971.739	0/1:537:386,151:386:13756:151:5306:-316.027,0,-963.343	0/0:202:202,0:202:7196:0:0:0,-60.8081,-587.775	0/0:129:129,0:129:4563:0:0:0,-38.8329,-378.983	0/1:140:82,58:82:2932:58:2040:-141.726,0,-197.99	0/0:298:296,1:296:10495:1:36:0,-86.1675,-846.974	0/1:58:40,18:40:1432:18:648:-41.1921,0,-89.9427	0/0:155:155,0:155:5497:0:0:0,-46.6596,-427.397	0/1:110:76,34:76:2707:34:1220:-76.9935,0,-182.166	0/0:68:68,0:68:2428:0:0:0,-20.47,-192.918	0/1:96:70,26:70:2512:26:924:-54.5788,0,-173.425	0/1:122:72,50:72:2580:50:1796:-125.197,0,-164.336	0/0:287:287,0:287:10274:0:0:0,-86.3956,-815.989	0/0:222:222,0:222:7884:0:0:0,-66.8287,-632.087
chr06	1459305	.	C	G	185504	PASS	AB=0.515289;ABP=14.1657;AC=139;AF=0.739362;AN=188;AO=8734;CIGAR=1X;DP=11429;DPB=11429;DPRA=30.7124;EPP=18786.7;EPPR=5809.54;GTI=1;LEN=1;MEANALT=1.13978;MQM=59.993;MQMR=59.9765;NS=94;NUMALT=1;ODDS=5.64133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=311996;QR=95735;RO=2682;RPL=8714;RPP=18795.3;RPPR=5818.22;RPR=20;RUN=1;SAF=1;SAP=18960;SAR=8733;SRF=1;SRP=5818.22;SRR=2681;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:22,20:22:792:20:707:-51.312,0,-58.9624	1/1:240:0,240:0:0:240:8586:-772.735,-72.2472,0	0/1:137:54,83:54:1940:83:2972:-226.472,0,-133.635	1/1:277:0,277:0:0:277:9896:-890.584,-83.3853,0	0/1:159:72,87:72:2577:87:3112:-232.443,0,-184.314	0/1:73:40,33:40:1402:33:1172:-83.8117,0,-104.006	1/1:148:0,147:0:0:147:5272:-474.255,-44.2514,0	0/1:208:111,96:111:3949:96:3424:-245.701,0,-292.928	0/1:124:58,66:58:2050:66:2368:-176.05,0,-147.44	0/1:166:67,99:67:2408:99:3504:-265.589,0,-167.005	0/1:53:24,29:24:860:29:1026:-76.6967,0,-61.7672	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	0/1:121:47,73:47:1692:73:2611:-198.754,0,-116.083	0/1:68:37,31:37:1324:31:1116:-80.2817,0,-98.9921	1/1:88:0,88:0:0:88:3155:-284.174,-26.4906,0	0/1:59:38,21:38:1368:21:756:-50.6065,0,-105.66	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0	0/1:78:31,46:31:1116:46:1648:-125.069,0,-77.2126	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	1/1:220:0,220:0:0:220:7860:-707.428,-66.2266,0	0/1:183:86,97:86:3080:97:3451:-255.715,0,-222.34	1/1:214:0,214:0:0:214:7667:-690.064,-64.4204,0	0/1:140:70,70:70:2512:70:2503:-183.379,0,-184.188	0/1:149:75,74:75:2662:74:2633:-192.362,0,-194.97	1/1:127:0,127:0:0:127:4536:-408.408,-38.2308,0	1/1:302:0,301:0:0:301:10736:-965.79,-90.61,0	0/1:246:124,122:124:4441:122:4356:-318.161,0,-325.805	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:394:171,223:171:6094:223:7976:-599.258,0,-429.955	0/1:173:114,59:114:4084:59:2104:-137.551,0,-315.665	1/1:149:0,149:0:0:149:5332:-480.014,-44.8535,0	0/1:21:8,12:8:284:12:432:-32.8408,0,-19.5235	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:263:155,107:155:5556:107:3818:-264.587,0,-420.934	1/1:206:0,206:0:0:206:7360:-662.45,-62.0122,0	1/1:56:0,56:0:0:56:1971:-177.66,-16.8577,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:177:2,175:2:72:175:6264:-557.016,-46.4456,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:189:93,96:93:3274:96:3440:-252.918,0,-237.983	0/1:122:68,54:68:2436:54:1936:-137.791,0,-182.77	0/1:89:47,42:47:1688:42:1504:-108.863,0,-125.415	0/1:210:83,127:83:2949:127:4549:-346.359,0,-202.427	0/1:192:68,124:68:2398:124:4404:-338.735,0,-158.277	1/1:288:1,285:1:36:285:10187:-913.162,-82.8561,0	1/1:193:0,192:0:0:192:6862:-617.29,-57.7978,0	0/1:147:67,80:67:2396:80:2854:-212.846,0,-171.646	0/1:140:63,76:63:2222:76:2715:-202.391,0,-158.039	0/1:15:8,7:8:288:7:244:-17.784,0,-21.752	1/1:121:0,121:0:0:121:4336:-390.415,-36.4246,0	0/1:61:44,17:44:1584:17:612:-37.0506,0,-124.489	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:121:68,53:68:2432:53:1877:-132.782,0,-182.711	1/1:54:0,54:0:0:54:1901:-171.366,-16.2556,0	0/1:17:13,4:13:464:4:144:-8.19611,0,-36.98	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	1/1:46:0,46:0:0:46:1647:-148.516,-13.8474,0	1/1:111:2,109:2:72:109:3888:-343.279,-26.5776,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:249:0,249:0:0:249:8891:-800.174,-74.9565,0	1/1:203:4,199:4:144:199:7093:-625.118,-47.7955,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:127:0,127:0:0:127:4524:-407.33,-38.2308,0	1/1:180:2,177:2:72:177:6336:-563.494,-47.4075,0	1/1:150:5,145:5:180:145:5173:-449.159,-28.6024,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:114:0,114:0:0:114:4056:-365.23,-34.3174,0	1/1:92:0,92:0:0:92:3276:-295.06,-27.6948,0	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:144:51,93:51:1820:93:3336:-257.109,0,-120.543	0/1:188:86,102:86:3031:102:3627:-270.043,0,-216.424	0/1:196:82,114:82:2932:114:4083:-308.654,0,-205.113	1/1:118:0,118:0:0:118:4210:-379.081,-35.5215,0	1/1:190:2,188:2:68:188:6703:-596.888,-50.738,0	0/1:30:18,12:18:644:12:428:-29.8279,0,-49.2597	1/1:174:3,171:3:108:171:6120:-540.825,-42.3041,0	1/1:173:0,173:0:0:173:6187:-556.928,-52.0782,0	0/1:287:136,151:136:4841:151:5391:-398.927,0,-349.45	1/1:104:0,104:0:0:104:3714:-334.458,-31.3071,0	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	0/1:111:50,61:50:1785:61:2184:-163.412,0,-127.516	1/1:158:1,157:1:36:157:5610:-501.424,-43.9645,0	0/1:59:23,36:23:820:36:1284:-98.0668,0,-56.3617	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	0/1:86:46,40:46:1656:40:1419:-102.118,0,-123.44	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:72:37,34:37:1328:34:1224:-88.7341,0,-98.0893	0/1:79:48,31:48:1724:31:1104:-75.8886,0,-131.664	1/1:152:0,152:0:0:152:5434:-489.189,-45.7566,0	1/1:118:0,118:0:0:118:4223:-380.25,-35.5215,0
chr06	1459314	.	G	C	44654.5	PASS	AB=0.483246;ABP=16.4714;AC=49;AF=0.260638;AN=188;AO=2699;CIGAR=1X;DP=11454;DPB=11454;DPRA=1.0945;EPP=5846.46;EPPR=18817;GTI=1;LEN=1;MEANALT=1.08475;MQM=59.9767;MQMR=59.9926;NS=94;NUMALT=1;ODDS=5.84248;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96442;QR=313242;RO=8740;RPL=2698;RPP=5855.13;RPPR=18825.7;RPR=1;RUN=1;SAF=1;SAP=5855.13;SAR=2698;SRF=1;SRP=18973;SRR=8739;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6107	0/0:239:238,0:238:8524:0:0:0,-71.6451,-766.799	0/1:139:82,57:82:2928:57:2044:-142.389,0,-221.912	0/0:278:277,0:277:9924:0:0:0,-83.3853,-892.739	0/1:159:89,70:89:3188:70:2512:-178.468,0,-239.28	0/1:76:35,41:35:1260:41:1464:-108.4,0,-90.8272	0/0:147:147,0:147:5280:0:0:0,-44.2514,-475.334	0/1:202:96,106:96:3444:106:3769:-278.602,0,-249.364	0/1:126:67,59:67:2396:59:2101:-151.428,0,-177.967	0/1:166:98,68:98:3512:68:2421:-168.174,0,-266.282	0/1:51:28,23:28:1008:23:828:-59.4916,0,-75.6838	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:123:73,50:73:2612:50:1790:-124.356,0,-198.301	0/1:68:32,36:32:1144:36:1292:-96.1137,0,-82.7995	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/1:60:22,38:22:788:38:1357:-104.368,0,-53.183	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:79:46,33:46:1648:33:1172:-82.0061,0,-124.827	0/0:40:39,0:39:1400:0:0:0,-11.7402,-125.939	0/0:219:217,0:217:7787:0:0:0,-65.3235,-700.497	0/1:182:97,84:97:3484:84:3012:-216.465,0,-258.924	0/0:214:214,0:214:7672:0:0:0,-64.4204,-690.514	0/1:142:69,73:69:2480:73:2593:-190.872,0,-180.707	0/1:151:75,76:75:2684:76:2683:-196.256,0,-196.348	0/0:128:128,0:128:4588:0:0:0,-38.5318,-413.084	0/0:301:300,0:300:10728:0:0:0,-90.309,-965.069	0/1:248:123,125:123:4396:125:4473:-328.082,0,-321.158	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:395:224,170:224:8036:170:6089:-429.144,0,-604.292	0/1:172:58,114:58:2072:114:4073:-314.976,0,-134.974	0/0:152:151,0:151:5412:0:0:0,-45.4555,-486.85	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:11:3,8:3:104:8:288:-22.9561,0,-6.39148	0/1:8:1,7:1:32:7:252:-20.6207,0,-0.791073	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:258:108,150:108:3880:150:5384:-407.023,0,-271.728	0/0:206:206,0:206:7404:0:0:0,-62.0122,-666.402	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.985	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:177:173,2:173:6184:2:72:0,-46.2034,-549.822	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:195:99,96:99:3544:96:3436:-250.753,0,-260.468	0/1:125:56,69:56:2008:69:2484:-186.184,0,-143.365	0/1:90:43,47:43:1544:47:1688:-125.114,0,-112.16	0/1:211:128,83:128:4600:83:2972:-204.195,0,-350.645	0/1:197:126,71:126:4508:71:2536:-169.189,0,-346.586	0/0:289:287,2:287:10312:2:72:0,-80.1609,-921.159	0/0:193:193,0:193:6924:0:0:0,-58.0988,-623.225	0/1:151:84,67:84:3012:67:2404:-171.161,0,-225.855	0/1:142:77,65:77:2748:65:2303:-164.784,0,-204.817	0/1:15:7,8:7:237:8:288:-21.752,0,-17.1436	0/0:121:120,0:120:4304:0:0:0,-36.1236,-387.176	0/1:62:17,45:17:608:45:1612:-126.706,0,-36.3882	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:122:52,70:52:1864:70:2490:-187.624,0,-131.314	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/1:17:4,13:4:144:13:464:-36.98,0,-8.19611	0/1:32:14,18:14:500:18:648:-49.0189,0,-35.7032	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.13	0/0:112:109,3:109:3920:3:108:0,-23.6402,-342.916	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:248:248,0:248:8896:0:0:0,-74.6554,-800.62	0/0:204:199,4:199:7128:4:144:0,-48.1553,-628.264	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/0:128:128,0:128:4580:0:0:0,-38.5318,-412.365	0/0:180:178,2:178:6392:2:68:0,-47.7277,-568.909	0/0:153:148,5:148:5292:5:180:0,-29.5055,-459.864	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:17:9,8:9:320:8:284:-20.7858,0,-24.0248	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/1:142:93,49:93:3324:49:1760:-115.748,0,-256.632	0/1:189:101,86:101:3616:86:3039:-217.104,0,-269.013	0/1:196:114,82:114:4080:82:2914:-203.491,0,-308.384	0/0:117:116,1:116:4156:1:36:0,-31.6222,-370.624	0/0:187:185,2:185:6648:2:72:0,-49.4559,-591.558	0/1:30:12,18:12:432:18:648:-49.621,0,-30.1903	0/0:175:172,3:172:6176:3:108:0,-42.6051,-545.86	0/0:173:173,0:173:6188:0:0:0,-52.0782,-557.018	0/1:289:152,137:152:5444:137:4886:-352.893,0,-403.091	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.078	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/1:110:59,51:59:2108:51:1828:-131.688,0,-156.876	0/0:157:155,2:155:5560:2:72:0,-40.425,-493.686	0/1:58:35,23:35:1252:23:828:-57.3844,0,-95.5253	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/1:87:40,47:40:1432:47:1680:-125.298,0,-102.988	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:74:36,38:36:1292:38:1360:-100.424,0,-94.3075	0/1:81:32,49:32:1152:49:1756:-133.941,0,-79.6067	0/0:152:151,1:151:5428:1:21:0,-43.6566,-486.547	0/0:120:120,0:120:4292:0:0:0,-36.1236,-386.372
chr06	1470789	.	TT	CT,CC	247201	PASS	AB=0.459171,0.539622;ABP=75.0008,70.8081;AC=138,48;AF=0.741935,0.258065;AN=186;AO=8689,2714;CIGAR=1X1M,2X;DP=11421;DPB=11421;DPRA=24.8174,1.13082;EPP=18870.9,5896.39;EPPR=0;GTI=2;LEN=1,2;MEANALT=1.80435,2.18966;MQM=59.9741,59.9772;MQMR=0;NS=93;NUMALT=2;ODDS=0.0787344;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=311206,95897;QR=0;RO=0;RPL=0,0;RPP=18870.9,5896.39;RPPR=0;RPR=8689,2714;RUN=1,1;SAF=8689,2714;SAP=18870.9,5896.39;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,20,21:0:0:20,21:720,752:-120.276,-61.6848,-55.6642,-58.9501,0,-52.6285	1/1:188:0,187,0:0:0:187,0:6692,0:-601.989,-56.2926,0,-601.989,-56.2926,-601.989	1/2:211:0,109,102:0:0:109,102:3896,3567:-608.202,-290.533,-257.721,-318.022,0,-287.317	1/1:323:0,322,1:0:0:322,1:11522,36:-1036.43,-96.9317,0,-1033.5,-93.6344,-1033.19	1/2:133:0,61,72:0:0:61,72:2180,2577:-388.25,-210.504,-192.142,-178.103,0,-156.429	1/2:73:0,32,40:0:0:32,40:1137,1423:-208.614,-115.966,-106.333,-92.6443,0,-80.6031	1/1:183:0,181,0:0:0:181,0:6492,0:-583.999,-54.4864,0,-583.999,-54.4864,-583.999	1/2:230:0,113,117:0:0:113,117:4056,4099:-664.732,-333.876,-299.86,-331.21,0,-295.989	1/2:105:0,54,51:0:0:54,51:1936,1826:-307.172,-149.269,-133.013,-158.261,0,-142.908	1/2:111:0,54,57:0:0:54,57:1932,2009:-320.447,-162.9,-146.645,-157.901,0,-140.742	1/2:28:0,13,15:0:0:13,15:464,527:-81.0744,-43.2444,-39.331,-38.1841,0,-33.6687	1/1:67:0,67,0:0:0:67,0:2400,0:-216.257,-20.169,0,-216.257,-20.169,-216.257	1/2:57:0,28,29:0:0:28,29:1008,1031:-166.622,-84.3725,-75.9436,-82.6075,0,-73.8776	1/2:46:0,22,24:0:0:22,24:783,837:-132.238,-68.4205,-61.7979,-64.1703,0,-56.9456	1/1:86:0,86,0:0:0:86,0:3080,0:-277.428,-25.8886,0,-277.428,-25.8886,-277.428	1/2:48:0,23,25:0:0:23,25:815,896:-139.826,-73.4348,-66.5111,-66.7471,0,-59.2213	1/1:79:0,79,0:0:0:79,0:2840,0:-255.838,-23.7814,0,-255.838,-23.7814,-255.838	1/2:62:0,34,28:0:0:34,28:1224,991:-180.947,-81.0711,-70.8361,-100.232,0,-91.8032	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/1:431:0,429,1:0:0:429,1:15376,36:-1383.24,-129.142,0,-1380.3,-126.15,-1380	1/2:172:0,75,97:0:0:75,97:2688,3418:-497.866,-278.634,-256.057,-219.587,0,-190.387	1/1:222:0,222,0:0:0:222,0:7934,0:-714.085,-66.8287,0,-714.085,-66.8287,-714.085	1/2:94:0,46,48:0:0:46,48:1652,1698:-273.419,-138.654,-124.807,-135.121,0,-120.672	1/2:136:0,46,90:0:0:46,90:1629,3202:-394.004,-261.31,-247.463,-133.049,0,-105.956	1/1:114:0,114,0:0:0:114,0:4066,0:-366.126,-34.3174,0,-366.126,-34.3174,-366.126	1/1:298:0,298,0:0:0:298,0:10676,0:-960.745,-89.7069,0,-960.745,-89.7069,-960.745	1/2:197:0,98,98:0:0:98,98:3524,3447:-568.195,-280.691,-251.19,-287.608,0,-258.107	1/1:49:0,49,0:0:0:49,0:1756,0:-158.324,-14.7505,0,-158.324,-14.7505,-158.324	1/2:432:0,196,235:0:0:196,235:7028,8288:-1248.17,-674.945,-615.943,-573.328,0,-502.586	1/2:181:0,77,103:0:0:77,103:2768,3642:-522.445,-296.621,-273.442,-225.822,0,-194.815	1/1:262:0,257,4:0:0:257,4:9206,144:-828.173,-77.3647,0,-816.423,-65.5177,-815.219	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	.:.:.:.:.:.:.:.	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:230:0,131,99:0:0:131,99:4704,3525:-671.384,-287.657,-248.222,-384.083,0,-354.281	1/1:186:0,186,0:0:0:186,0:6664,0:-599.832,-55.9916,0,-599.832,-55.9916,-599.832	1/1:40:0,40,0:0:0:40,0:1440,0:-129.898,-12.0412,0,-129.898,-12.0412,-129.898	1/2:3:0,1,2:0:0:1,2:36,70:-8.98601,-6.04527,-5.74424,-3.29724,0,-2.69518	1/1:212:0,208,4:0:0:208,4:7457,144:-670.811,-62.6142,0,-659.061,-50.5047,-657.857	1/1:43:0,41,2:0:0:41,2:1460,72:-131.336,-12.3422,0,-125.461,-6.10757,-124.859	1/2:158:0,72,86:0:0:72,86:2588,3034:-458.539,-247.401,-225.727,-211.494,0,-185.606	1/2:89:0,25,64:0:0:25,64:900,2277:-259.361,-185.924,-178.399,-73.7953,0,-54.5293	1/2:74:0,41,33:0:0:41,33:1468,1160:-214.49,-94.7707,-82.4285,-120.074,0,-110.14	1/2:114:0,60,54:0:0:60,54:2130,1877:-326.499,-152.947,-134.885,-173.903,0,-157.647	1/2:233:0,98,135:0:0:98,135:3520,4773:-676.24,-389.089,-359.588,-287.508,0,-246.869	1/1:255:0,252,2:0:0:252,2:9040,72:-813.251,-75.8596,0,-807.376,-69.9115,-806.774	1/1:127:0,126,0:0:0:126,0:4485,0:-403.46,-37.9298,0,-403.46,-37.9298,-403.46	1/2:214:0,91,123:0:0:91,123:3258,4360:-621.154,-355.549,-328.155,-265.961,0,-228.934	1/2:169:0,73,96:0:0:73,96:2620,3382:-489.413,-275.697,-253.722,-214.072,0,-185.173	1/2:6:0,2,4:0:0:2,4:72,144:-17.9843,-12.1095,-11.5074,-6.23466,0,-5.03054	1/1:192:0,192,0:0:0:192,0:6891,0:-620.256,-57.7978,0,-620.256,-57.7978,-620.256	1/2:52:0,20,32:0:0:20,32:716,1135:-151.215,-92.8248,-86.8042,-58.7471,0,-49.1142	1/2:18:0,3,15:0:0:3,15:108,501:-49.7072,-40.8906,-39.9875,-9.17208,0,-4.65663	1/2:195:0,86,109:0:0:86,109:3088,3847:-565.516,-313.613,-287.725,-252.259,0,-219.446	1/1:41:0,41,0:0:0:41,0:1461,0:-131.779,-12.3422,0,-13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chr06	1470799	.	T	C	184626	PASS	AB=0.459964;ABP=71.6914;AC=138;AF=0.741935;AN=186;AO=8655;CIGAR=1X;DP=11349;DPB=11349;DPRA=24.6609;EPP=18788.4;EPPR=5842.1;GTI=3;LEN=1;MEANALT=1.05435;MQM=59.9709;MQMR=59.9799;NS=93;NUMALT=1;ODDS=0.116137;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309583;QR=96055;RO=2689;RPL=0;RPP=18797.1;RPPR=5842.1;RPR=8655;RUN=1;SAF=8654;SAP=18788.4;SAR=1;SRF=2689;SRP=5842.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:22,19:22:788:19:680:-49.1869,0,-58.9026	1/1:189:0,189:0:0:189:6744:-607.027,-56.8947,0	0/1:206:101,105:101:3605:105:3755:-276.137,0,-262.643	1/1:319:0,319:0:0:319:11454:-1030.6,-96.0286,0	0/1:135:74,61:74:2645:61:2173:-155.196,0,-197.656	0/1:73:40,33:40:1436:33:1188:-85.2534,0,-107.562	1/1:182:0,182:0:0:182:6513:-586.248,-54.7875,0	0/1:226:114,112:114:4065:112:3992:-291.437,0,-298.004	0/1:103:50,53:50:1796:53:1908:-140.991,0,-130.916	0/1:111:57,53:57:2044:53:1880:-136.045,0,-149.608	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	1/1:67:0,67:0:0:67:2391:-215.447,-20.169,0	0/1:58:30,28:30:1076:28:1000:-72.8556,0,-79.6931	0/1:46:23,23:23:824:23:828:-60.9967,0,-60.6359	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	0/1:47:25,22:25:896:22:792:-57.4573,0,-66.8119	1/1:77:0,77:0:0:77:2763:-248.91,-23.1793,0	0/1:62:28,34:28:1008:34:1220:-91.4429,0,-72.3725	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	1/1:432:0,432:0:0:432:15470:-1392.01,-130.045,0	0/1:169:97,72:97:3454:72:2584:-181.935,0,-260.189	1/1:221:0,221:0:0:221:7900:-711.019,-66.5276,0	0/1:93:48,45:48:1712:45:1585:-114.943,0,-126.37	0/1:137:91,46:91:3219:46:1644:-107.008,0,-248.688	1/1:114:0,114:0:0:114:4064:-365.946,-34.3174,0	1/1:297:0,297:0:0:297:10636:-957.15,-89.4059,0	0/1:188:91,97:91:3252:97:3476:-256.449,0,-236.308	1/1:49:0,49:0:0:49:1728:-155.802,-14.7505,0	0/1:430:236,194:236:8437:194:6936:-494.864,0,-629.89	0/1:179:103,76:103:3673:76:2724:-191.519,0,-276.888	1/1:260:4,256:4:144:256:9161:-810.878,-64.9542,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:230:101,129:101:3628:129:4615:-346.277,0,-257.487	1/1:191:0,190:0:0:190:6820:-613.643,-57.1957,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:212:3,209:3:108:209:7460:-661.369,-53.7432,0	1/1:43:0,43:0:0:43:1532:-138.173,-12.9443,0	0/1:155:84,71:84:2975:71:2540:-182.191,0,-221.319	0/1:92:67,25:67:2404:25:896:-53.2656,0,-188.922	0/1:72:32,40:32:1144:40:1436:-107.864,0,-81.5954	0/1:115:54,61:54:1925:61:2172:-161.128,0,-138.906	0/1:229:131,98:131:4673:98:3512:-247.354,0,-351.795	1/1:254:2,252:2:72:252:8965:-799.993,-69.6249,0	1/1:123:0,123:0:0:123:4409:-396.981,-37.0267,0	0/1:212:122,90:122:4380:90:3200:-224.401,0,-330.554	0/1:170:97,73:97:3453:73:2599:-182.983,0,-259.807	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:194:0,194:0:0:194:6943:-624.89,-58.3998,0	0/1:53:33,20:33:1188:20:712:-48.4521,0,-91.274	0/1:18:13,5:13:445:5:180:-11.1335,0,-34.9568	0/1:195:108,87:108:3801:87:3128:-223.044,0,-283.584	1/1:40:0,40:0:0:40:1417:-127.737,-12.0412,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:14:6,8:6:208:8:288:-22.053,0,-14.8447	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:246:0,246:0:0:246:8788:-790.91,-74.0534,0	1/1:157:0,157:0:0:157:5636:-507.359,-47.2617,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	1/1:164:0,164:0:0:164:5880:-529.039,-49.3689,0	1/1:216:3,213:3:104:213:7568:-671.46,-55.3197,0	1/1:115:0,115:0:0:115:4112:-370.265,-34.6185,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:99:0,99:0:0:99:3548:-319.528,-29.802,0	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:152:0,151:0:0:151:5382:-484.193,-45.4555,0	0/1:63:28,35:28:1008:35:1260:-94.7406,0,-72.0715	0/1:103:59,44:59:2108:44:1560:-109.626,0,-158.979	0/1:314:164,150:164:5861:150:5364:-388.37,0,-433.077	1/1:149:2,147:2:72:147:5280:-468.497,-38.0167,0	1/1:167:1,165:1:36:165:5901:-527.675,-46.6576,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:250:1,249:1:36:249:8891:-796.576,-71.6592,0	1/1:209:0,209:0:0:209:7478:-673.004,-62.9153,0	0/1:215:115,100:115:4132:100:3552:-255.167,0,-307.341	1/1:121:0,121:0:0:121:4332:-390.055,-36.4246,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:82:48,34:48:1724:34:1224:-85.7826,0,-130.761	1/1:151:5,146:5:180:146:5240:-455.184,-28.9035,0	0/1:50:30,20:30:1076:20:720:-50.0773,0,-82.1014	1/1:84:0,84:0:0:84:3007:-270.861,-25.2865,0	0/1:61:27,34:27:972:34:1208:-90.6633,0,-69.4351	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:53:33,20:33:1184:20:720:-49.1742,0,-90.9137	0/1:70:47,23:47:1680:23:824:-53.4112,0,-130.415	1/1:180:0,179:0:0:179:6420:-577.526,-53.8844,0	1/1:98:0,98:0:0:98:3503:-315.48,-29.5009,0
chr06	1478344	.	TCG	ACA,ACG	172404	PASS	AB=0.4899,0.506686;ABP=6.12449,4.37496;AC=141,47;AF=0.75,0.25;AN=188;AO=6188,1799;CIGAR=1X1M1X,1X2M;DP=8006;DPB=8006.33;DPRA=0,1.03535;EPP=13431.4,3909.49;EPPR=0;GTI=1;LEN=3,1;MEANALT=1.76596,2.27778;MQM=59.9729,59.9994;MQMR=0;NS=94;NUMALT=2;ODDS=4.72351;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=220133,64338;QR=0;RO=0;RPL=0,0;RPP=13440.1,3909.49;RPPR=0;RPR=6188,1799;RUN=1,1;SAF=6187,1799;SAP=13431.4,3909.49;SAR=1,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,21,11:0:0:21,11:750,396:-93.8119,-32.6714,-26.3498,-61.4993,0,-58.1879	1/1:102:0,101,0:0:0:101,0:3583,0:-322.446,-30.404,0,-322.446,-30.404,-322.446	1/2:138:0,66,72:0:0:66,72:2351,2584:-402.758,-211.135,-191.267,-191.981,0,-170.307	1/1:193:0,193,0:0:0:193,0:6864,0:-617.833,-58.0988,0,-617.833,-58.0988,-617.833	1/2:61:0,29,32:0:0:29,32:1040,1152:-179.183,-94.3572,-85.6273,-85.1847,0,-75.5517	1/2:44:0,26,17:0:0:26,17:933,597:-124.765,-48.6549,-40.8281,-76.1797,0,-71.0621	1/1:191:0,191,0:0:0:191,0:6792,0:-611.357,-57.4967,0,-611.357,-57.4967,-611.357	1/2:110:0,47,62:0:0:47,62:1657,2213:-315.4,-180.488,-166.339,-134.985,0,-116.321	1/2:76:0,37,39:0:0:37,39:1319,1400:-222.076,-114.559,-103.421,-107.874,0,-96.1339	1/2:111:0,56,54:0:0:56,54:1991,1925:-319.158,-156.91,-140.052,-162.244,0,-145.989	1/2:24:0,9,15:0:0:9,15:303,540:-68.1032,-44.4211,-41.7118,-24.0208,0,-19.5054	1/1:38:0,38,0:0:0:38,0:1362,0:-122.881,-11.4391,0,-122.881,-11.4391,-122.881	1/2:44:0,22,22:0:0:22,22:784,792:-128.887,-64.983,-58.3604,-64.2617,0,-57.639	1/2:51:0,32,19:0:0:32,19:1146,676:-148.909,-55.4484,-45.8155,-93.817,0,-88.0975	1/1:30:0,30,0:0:0:30,0:1073,0:-96.8826,-9.0309,0,-96.8826,-9.0309,-96.8826	1/2:21:0,6,15:0:0:6,15:216,540:-62.0456,-44.4211,-42.6149,-17.9843,0,-13.4689	1/1:22:0,22,0:0:0:22,0:790,0:-71.4253,-6.62266,0,-71.4253,-6.62266,-71.4253	1/2:29:0,17,12:0:0:17,12:602,432:-84.6437,-35.6088,-30.4913,-49.3923,0,-45.78	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:229:0,229,0:0:0:229,0:8158,0:-734.241,-68.9359,0,-734.241,-68.9359,-734.241	1/2:12:0,5,7:0:0:5,7:180,252:-35.6088,-20.9217,-19.4166,-15.0469,0,-12.9397	1/1:146:0,146,0:0:0:146,0:5216,0:-469.58,-43.9504,0,-469.58,-43.9504,-469.58	1/2:132:0,60,72:0:0:60,72:2121,2584:-383.876,-211.135,-193.073,-173.097,0,-151.423	1/2:123:0,54,69:0:0:54,69:1929,2465:-358.606,-201.331,-185.076,-157.632,0,-136.86	1/1:55:0,55,0:0:0:55,0:1964,0:-177.036,-16.5567,0,-177.036,-16.5567,-177.036	1/1:294:0,294,0:0:0:294,0:10409,0:-936.74,-88.5028,0,-936.74,-88.5028,-936.74	1/2:144:0,76,66:0:0:76,66:2722,2361:-414.501,-192.519,-169.641,-221.98,0,-202.112	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:272:0,148,122:0:0:148,122:5243,4358:-782.473,-355.37,-310.818,-427.162,0,-390.437	1/2:141:0,67,74:0:0:67,74:2371,2634:-408.152,-215.029,-194.86,-193.477,0,-171.201	1/1:148:0,146,2:0:0:146,2:5170,72:-465.083,-43.9504,0,-459.208,-37.7157,-458.606	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	1/1:19:0,19,0:0:0:19,0:674,0:-60.987,-5.71957,0,-60.987,-5.71957,-60.987	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/2:11:0,5,6:0:0:5,6:178,208:-31.7648,-17.2529,-15.7478,-14.8635,0,-13.0573	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:122:0,51,71:0:0:51,71:1832,2556:-358.366,-208.916,-193.564,-149.808,0,-128.435	1/1:148:0,148,0:0:0:148,0:5281,0:-475.336,-44.5524,0,-475.336,-44.5524,-475.336	1/1:42:0,42,0:0:0:42,0:1504,0:-135.568,-12.6433,0,-135.568,-12.6433,-135.568	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:178:0,171,7:0:0:171,7:6093,252:-548.114,-51.4761,0,-527.552,-30.5544,-525.445	1/1:11:0,10,0:0:0:10,0:352,0:-31.6585,-3.0103,0,-31.6585,-3.0103,-31.6585	1/2:128:0,65,62:0:0:65,62:2316,2224:-370.175,-181.4,-161.834,-188.772,0,-170.108	1/2:28:0,11,17:0:0:11,17:389,612:-81.9767,-50.2959,-46.9846,-32.0367,0,-26.9192	1/2:24:0,10,14:0:0:10,14:351,504:-70.0455,-41.4837,-38.4734,-28.9164,0,-24.702	1/2:113:0,45,67:0:0:45,67:1586,2404:-325.264,-196.137,-182.59,-129.171,0,-109.002	1/2:100:0,46,54:0:0:46,54:1644,1908:-289.785,-155.739,-141.892,-134.401,0,-118.145	1/1:210:0,206,2:0:0:206,2:7308,72:-657.454,-62.0122,0,-651.579,-56.0974,-650.977	1/1:120:0,120,0:0:0:120,0:4278,0:-385.199,-36.1236,0,-385.199,-36.1236,-385.199	1/2:92:0,40,52:0:0:40,52:1413,1853:-266.464,-151.394,-139.353,-115.424,0,-99.7707	1/2:172:0,94,77:0:0:94,77:3332,2741:-494.837,-223.392,-195.096,-271.44,0,-248.26	1/2:13:0,5,8:0:0:5,8:178,273:-37.0053,-22.4919,-20.9868,-14.8635,0,-12.4553	1/1:131:0,131,0:0:0:131,0:4659,0:-419.473,-39.4349,0,-419.473,-39.4349,-419.473	1/2:64:0,36,28:0:0:36,28:1286,1008:-187.456,-82.6075,-71.7704,-105.207,0,-96.7781	1/2:30:0,12,18:0:0:12,18:427,648:-88.032,-53.2333,-49.621,-35.156,0,-29.7375	1/2:103:0,52,50:0:0:52,50:1853,1796:-297.55,-146.511,-130.857,-151.036,0,-135.985	1/1:68:0,68,0:0:0:68,0:2433,0:-219.225,-20.47,0,-219.225,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chr06	1478550	.	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chr06	1479380	.	TAA	CAT,CAA	85482.3	PASS	AB=0.574912,0.423516;ABP=126.964,132.224;AC=141,47;AF=0.75,0.25;AN=188;AO=5202,1089;CIGAR=1X1M1X,1X2M;DP=6300;DPB=6300;DPRA=67.7312,0.773094;EPP=11299,2359.07;EPPR=0;GTI=7;LEN=3,1;MEANALT=1.65591,2.07547;MQM=25.5396,50.3838;MQMR=0;NS=94;NUMALT=2;ODDS=0.492837;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=179361,38413;QR=0;RO=0;RPL=0,0;RPP=11299,2367.74;RPPR=0;RPR=5202,1089;RUN=1,1;SAF=0,1;SAP=11299,2359.07;SAR=5202,1088;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:34:0,28,6:0:0:28,6:954,212:-70.3309,-17.4407,-9.01183,-53.2214,0,-51.4152	1/1:50:0,50,0:0:0:50,0:1749,0:-111.784,-15.0515,0,-111.784,-15.0515,-111.784	1/2:121:0,84,37:0:0:84,37:2933,1328:-268.223,-108.005,-82.718,-160.541,0,-149.403	1/1:218:0,218,0:0:0:218,0:7500,0:-477.877,-65.6245,0,-477.877,-65.6245,-477.877	1/1:31:0,29,2:0:0:29,2:1014,72:-66.3096,-8.72987,0,-60.4632,-2.53227,-59.8611	1/2:10:0,9,1:0:0:9,1:309,36:-19.9849,-3.27774,-0.568467,-17.0534,0,-16.7523	1/1:33:0,32,0:0:0:32,0:1087,0:-71.463,-9.63296,0,-71.463,-9.63296,-71.463	1/2:87:0,61,26:0:0:61,26:2109,920:-190.112,-74.621,-56.2582,-115.81,0,-107.984	1/2:50:0,31,18:0:0:31,18:1076,635:-110.287,-51.3993,-42.0674,-58.8459,0,-53.4274	1/2:39:0,13,26:0:0:13,26:457,932:-101.148,-76.1731,-72.2597,-25.2586,0,-17.4318	1/2:31:0,17,14:0:0:17,14:585,492:-72.3352,-40.1169,-34.9993,-32.5201,0,-28.3057	1/1:65:0,65,0:0:0:65,0:2201,0:-142.823,-19.567,0,-142.823,-19.567,-142.823	1/2:52:0,24,27:0:0:24,27:813,956:-122.832,-77.5405,-70.3157,-45.3342,0,-37.2064	1/2:43:0,24,19:0:0:24,19:832,672:-101.508,-54.2768,-47.0521,-47.5375,0,-41.8179	1/1:60:0,60,0:0:0:60,0:2117,0:-132.871,-18.0618,0,-132.871,-18.0618,-132.871	1/2:34:0,15,19:0:0:15,19:527,676:-84.4966,-54.8807,-50.3652,-29.9129,0,-24.1933	1/1:27:0,27,0:0:0:27,0:923,0:-59.3985,-8.12781,0,-59.3985,-8.12781,-59.3985	1/2:29:0,13,16:0:0:13,16:427,563:-69.6717,-45.9149,-42.0015,-24.0443,0,-19.2278	1/1:12:0,12,0:0:0:12,0:426,0:-26.8395,-3.61236,0,-26.8395,-3.61236,-26.8395	1/1:117:0,116,1:0:0:116,1:4021,36:-254.981,-34.9195,0,-252.05,-31.6313,-251.749	1/2:65:0,36,29:0:0:36,29:1182,1028:-153.696,-83.634,-72.797,-70.369,0,-61.6391	1/1:119:0,119,0:0:0:119,0:4141,0:-279.947,-35.8226,0,-279.947,-35.8226,-279.947	1/2:50:0,29,21:0:0:29,21:987,739:-114.573,-60.3558,-51.6259,-54.5225,0,-48.2009	1/2:32:0,21,11:0:0:21,11:734,384:-73.8434,-31.42,-25.0983,-42.7401,0,-39.4288	1/1:45:0,45,0:0:0:45,0:1529,0:-102.298,-13.5464,0,-102.298,-13.5464,-102.298	1/1:200:0,199,0:0:0:199,0:6900,0:-465.539,-59.905,0,-465.539,-59.905,-465.539	1/2:118:0,63,55:0:0:63,55:2210,1943:-281.755,-156.657,-137.692,-125.404,0,-108.847	1/1:25:0,25,0:0:0:25,0:863,0:-56.8501,-7.52575,0,-56.8501,-7.52575,-56.8501	1/2:182:0,102,80:0:0:102,80:3529,2839:-439.301,-231.061,-200.356,-208.552,0,-184.47	1/2:106:0,65,41:0:0:65,41:2232,1448:-245.012,-117.1,-97.5327,-128.225,0,-115.882	1/1:87:0,87,0:0:0:87,0:3033,0:-192.174,-26.1896,0,-192.174,-26.1896,-192.174	1/2:6:0,1,5:0:0:1,5:34,172:-16.061,-14.0937,-13.7927,-2.23523,0,-0.730077	1/1:5:0,5,0:0:0:5,0:178,0:-11.7494,-1.50515,0,-11.7494,-1.50515,-11.7494	1/1:3:0,3,0:0:0:3,0:102,0:-6.85624,-0.90309,0,-6.85624,-0.90309,-6.85624	1/2:4:0,2,2:0:0:2,2:69,72:-9.95206,-6.1976,-5.59554,-4.05598,0,-3.45392	1/1:3:0,3,0:0:0:3,0:106,0:-6.8903,-0.90309,0,-6.8903,-0.90309,-6.8903	1/2:151:0,86,65:0:0:86,65:2949,2278:-359.246,-185.325,-159.436,-174.232,0,-154.665	1/1:82:0,82,0:0:0:82,0:2823,0:-188.487,-24.6845,0,-188.487,-24.6845,-188.487	1/1:29:0,29,0:0:0:29,0:982,0:-63.6203,-8.72987,0,-63.6203,-8.72987,-63.6203	1/2:5:0,4,1:0:0:4,1:142,36:-11.1827,-3.27774,-2.07362,-8.24233,0,-7.9413	1/1:119:0,116,3:0:0:116,3:4000,104:-263.574,-34.9195,0,-255.16,-26.1635,-254.257	1/1:15:0,15,0:0:0:15,0:512,0:-34.0876,-4.51545,0,-34.0876,-4.51545,-34.0876	1/2:133:0,106,27:0:0:106,27:3652,951:-285.942,-77.3474,-45.4382,-208.925,0,-200.797	1/2:33:0,15,18:0:0:15,18:528,635:-80.4324,-51.7137,-47.1982,-29.0126,0,-23.594	1/2:33:0,17,16:0:0:17,16:604,547:-76.9042,-44.455,-39.3375,-32.7434,0,-27.9269	1/2:38:0,31,7:0:0:31,7:1087,240:-83.6658,-19.8017,-10.4698,-64.1917,0,-62.0845	1/2:42:0,31,10:0:0:31,10:1064,352:-87.7276,-28.5975,-19.2656,-59.212,0,-56.2017	1/1:146:0,144,0:0:0:144,0:4886,0:-314.578,-43.3483,0,-314.578,-43.3483,-314.578	1/1:71:0,71,0:0:0:71,0:2435,0:-156.231,-21.3731,0,-156.231,-21.3731,-156.231	1/2:119:0,51,68:0:0:51,68:1765,2407:-291.83,-195.498,-180.145,-96.623,0,-76.1529	1/2:84:0,61,23:0:0:61,23:2112,811:-190.432,-66.1643,-47.8015,-124.594,0,-117.67	1/2:9:0,2,7:0:0:2,7:63,252:-24.3307,-20.6795,-20.0774,-3.91518,0,-1.80797	1/1:93:0,93,0:0:0:93,0:3246,0:-205.358,-27.9958,0,-205.358,-27.9958,-205.358	1/2:43:0,27,16:0:0:27,16:934,557:-100.427,-45.5724,-37.4445,-55.1689,0,-50.3525	1/2:3:0,2,1:0:0:2,1:70,36:-7.02495,-3.27774,-2.67568,-4.06772,0,-3.76669	1/2:91:0,54,36:0:0:54,36:1879,1234:-205.993,-99.4671,-83.2115,-106.574,0,-95.7367	1/1:25:0,25,0:0:0:25,0:864,0:-55.2537,-7.52575,0,-55.2537,-7.52575,-55.2537	1/2:6:0,4,2:0:0:4,2:142,72:-14.464,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chr06	1506178	.	T	A	54377.5	PASS	AB=0.461263;ABP=24.8803;AC=135;AF=0.718085;AN=188;AO=2580;CIGAR=1X;DP=3507;DPB=3507;DPRA=10.8895;EPP=5536.14;EPPR=1985.65;GTI=3;LEN=1;MEANALT=1.02247;MQM=59.9329;MQMR=60;NS=94;NUMALT=1;ODDS=0.837086;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92114;QR=33156;RO=925;RPL=8;RPP=5536.14;RPPR=1985.65;RPR=2572;RUN=1;SAF=2580;SAP=5605.41;SAR=0;SRF=925;SRP=2011.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	1/1:62:0,62:0:0:62:2194:-197.722,-18.6639,0	0/1:81:39,42:39:1400:42:1504:-111.271,0,-101.916	1/1:63:0,63:0:0:63:2248:-202.584,-18.9649,0	0/1:42:20,22:20:705:22:777:-57.608,0,-51.1295	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:26:9,17:9:320:17:596:-46.141,0,-21.3156	0/1:31:15,16:15:540:16:572:-42.4815,0,-39.6046	0/1:47:30,17:30:1080:17:582:-38.5366,0,-83.3648	0/1:20:13,7:13:468:7:252:-17.0068,0,-36.439	1/1:19:0,19:0:0:19:680:-61.4933,-5.71957,0	0/1:30:11,19:11:396:19:684:-52.8594,0,-26.9518	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:26:12,14:12:428:14:504:-37.8713,0,-31.032	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:28:8,20:8:288:20:720:-56.6999,0,-17.8386	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:92:0,92:0:0:92:3297:-296.934,-27.6948,0	0/1:57:20,37:20:716:37:1311:-101.127,0,-47.609	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:41:23,18:23:828:18:648:-46.3097,0,-62.5019	0/1:65:30,35:30:1080:35:1260:-94.1385,0,-77.9463	1/1:28:0,28:0:0:28:996:-89.9543,-8.42884,0	1/1:106:0,106:0:0:106:3808:-342.908,-31.9092,0	0/1:75:47,28:47:1688:28:993:-67.1053,0,-129.63	0/1:7:1,6:1:36:6:193:-15.5784,0,-1.49106	0/1:142:98,44:98:3520:44:1576:-99.3853,0,-274.262	0/1:46:26,20:26:932:20:716:-50.9203,0,-70.3515	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:67:26,41:26:936:41:1472:-112.607,0,-64.3905	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:20:0,20:0:0:20:720:-65.1272,-6.0206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:62:2,60:2:72:60:2132:-185.31,-11.8271,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:63:40,23:40:1436:23:790:-52.4476,0,-110.573	0/1:35:15,20:15:536:20:720:-54.5927,0,-38.0388	0/1:27:10,17:10:351:17:608:-46.9242,0,-23.7989	0/1:36:21,15:21:756:15:528:-37.0143,0,-57.5301	0/1:42:25,17:25:892:17:608:-42.4088,0,-67.9564	1/1:40:0,39:0:0:39:1404:-126.299,-11.7402,0	1/1:42:0,42:0:0:42:1477:-133.222,-12.6433,0	0/1:46:32,13:32:1148:13:468:-28.5535,0,-89.7237	0/1:69:37,32:37:1324:32:1122:-80.5136,0,-98.691	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:19:12,7:12:432:7:252:-17.3078,0,-33.5016	0/1:9:4,5:4:144:5:165:-12.4643,0,-10.6043	0/1:50:27,23:27:972:23:820:-59.071,0,-72.7464	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:36:0,36:0:0:36:1277:-115.231,-10.8371,0	1/1:54:0,54:0:0:54:1935:-174.426,-16.2556,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:78:1,77:1:36:77:2759:-244.933,-19.8821,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:48:0,48:0:0:48:1717:-154.816,-14.4494,0	1/1:57:0,57:0:0:57:2038:-183.691,-17.1587,0	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:24:0,24:0:0:24:839:-75.8273,-7.22472,0	1/1:45:0,45:0:0:45:1598:-144.108,-13.5464,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:23:11,12:11:383:12:416:-30.8442,0,-27.8796	0/1:46:30,16:30:1076:16:572:-37.966,0,-83.3055	0/1:86:57,29:57:2029:29:1040:-67.0036,0,-156.992	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:42:1,41:1:36:41:1457:-127.826,-9.04499,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:41:0,41:0:0:41:1461:-131.785,-12.3422,0	0/1:78:45,33:45:1612:33:1188:-83.7483,0,-121.89	1/1:41:0,41:0:0:41:1469:-132.266,-12.3422,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	1/1:65:0,65:0:0:65:2320:-209.059,-19.567,0	0/1:29:9,20:9:324:20:720:-56.3989,0,-20.776	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:36:18,18:18:644:18:644:-47.4535,0,-47.4535	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:28:9,19:9:324:19:676:-52.7392,0,-21.077	0/1:20:18,2:18:644:2:72:-0.816123,0,-52.27	1/1:47:0,47:0:0:47:1672:-150.767,-14.1484,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0
chr06	1523062	.	A	G	33745.2	PASS	AB=0.486317;ABP=9.48764;AC=49;AF=0.260638;AN=188;AO=1959;CIGAR=1X;DP=8323;DPB=8323;DPRA=1.49531;EPP=3933.26;EPPR=12599.8;GTI=4;LEN=1;MEANALT=1;MQM=59.441;MQMR=59.9188;NS=94;NUMALT=1;ODDS=0.936197;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69856;QR=227855;RO=6364;RPL=1921;RPP=3933.26;RPPR=12608.1;RPR=38;RUN=1;SAF=0;SAP=4256.92;SAR=1959;SRF=1;SRP=13813.6;SRR=6363;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:46,29:46:1644:29:1018:-69.1629,0,-125.671	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.178	0/1:134:83,51:83:2956:51:1816:-122.953,0,-225.608	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:81:42,39:42:1503:39:1392:-101.06,0,-111.18	0/1:27:10,17:10:356:17:608:-46.916,0,-24.2534	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/1:224:110,114:110:3918:114:4031:-295.215,0,-285.365	0/1:107:50,57:50:1792:57:2019:-149.212,0,-129.341	0/1:108:71,37:71:2544:37:1313:-85.9538,0,-196.613	0/1:33:17,16:17:612:16:576:-42.2386,0,-45.4771	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:56:27,29:27:968:29:1031:-76.2368,0,-70.5797	0/1:42:20,22:20:716:22:792:-58.9174,0,-52.1245	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.764	0/1:45:22,23:22:777:23:814:-59.9695,0,-56.704	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:34:17,17:17:612:17:612:-45.1538,0,-45.1784	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:152:152,0:152:5439:0:0:0,-45.7566,-489.585	0/1:253:145,108:145:5176:108:3860:-271.194,0,-389.792	0/0:132:132,0:132:4719:0:0:0,-39.736,-424.863	0/1:74:34,40:34:1224:40:1436:-107.257,0,-88.1908	0/1:91:30,61:30:1072:61:2183:-169.319,0,-69.3987	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/0:479:477,2:477:17058:2:72:0,-137.357,-1527.32	0/1:236:115,121:115:4124:121:4321:-317.971,0,-300.296	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.821	0/1:343:190,153:190:6820:153:5475:-389.564,0,-510.615	0/1:75:24,51:24:855:51:1819:-140.781,0,-54.6929	0/0:70:64,6:64:2273:6:208:0,-2.01302,-185.77	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:149:74,75:74:2633:75:2674:-196.046,0,-192.363	0/0:130:130,0:130:4672:0:0:0,-39.1339,-420.634	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:51:50,1:50:1800:1:36:0,-11.7543,-158.684	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/1:174:91,83:91:3247:83:2984:-216.381,0,-240.072	0/1:51:25,26:25:900:26:936:-69.1113,0,-65.9685	0/1:46:24,22:24:845:22:779:-56.5818,0,-62.5197	0/1:124:64,60:64:2288:60:2144:-155.885,0,-168.768	0/1:117:56,61:56:2012:61:2179:-161.125,0,-146.133	0/0:212:210,2:210:7486:2:72:0,-56.9816,-666.933	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/1:170:91,79:91:3272:79:2810:-201.801,0,-243.506	0/1:73:43,30:43:1540:30:1072:-74.8082,0,-116.918	0/1:16:9,7:9:316:7:252:-18.2125,0,-23.9624	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/1:47:27,20:27:972:20:702:-49.3537,0,-73.6461	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:133:60,73:60:2151:73:2587:-193.038,0,-153.819	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:133:133,0:133:4759:0:0:0,-40.037,-428.467	0/0:206:205,1:205:7348:1:36:0,-58.4139,-657.746	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.543	0/0:81:81,0:81:2903:0:0:0,-24.3834,-261.396	0/0:163:162,1:162:5816:1:36:0,-45.4696,-519.823	0/0:222:219,3:219:7867:3:108:0,-56.7535,-697.966	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.747	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.89	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:25:11,14:11:396:14:504:-38.17,0,-28.457	0/0:61:61,0:61:2162:0:0:0,-18.3628,-194.846	0/1:89:51,38:51:1832:38:1347:-94.53,0,-138.369	0/1:132:54,78:54:1918:78:2788:-211.416,0,-133.155	0/1:176:88,88:88:3138:88:3133:-229.114,0,-229.664	0/0:99:99,0:99:3527:0:0:0,-29.802,-317.64	0/0:191:189,2:189:6785:2:72:0,-50.6686,-603.7	0/1:16:9,7:9:324:7:248:-17.8394,0,-24.6894	0/0:145:144,1:144:5180:1:36:0,-40.0511,-462.734	0/0:152:152,0:152:5455:0:0:0,-45.7566,-490.886	0/1:107:59,48:59:2120:48:1715:-122.405,0,-158.858	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.608	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.517	0/1:53:26,27:26:936:27:949:-69.7635,0,-68.6049	0/0:123:123,0:123:4405:0:0:0,-37.0267,-396.576	0/1:26:17,9:17:612:9:324:-21.6708,0,-47.5867	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:58:29,29:29:1035:29:1044:-76.8069,0,-76.0033	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:47:33,14:33:1170:14:504:-31.5404,0,-91.4575	0/1:66:23,43:23:824:43:1529:-118.024,0,-54.6153	0/0:199:199,0:199:7132:0:0:0,-59.905,-641.89	0/0:90:90,0:90:3231:0:0:0,-27.0927,-291.01
chr06	1530596	.	G	C	131083	PASS	AB=0.503866;ABP=3.53083;AC=139;AF=0.747312;AN=186;AO=6310;CIGAR=1X;DP=8318;DPB=8318;DPRA=0;EPP=13687.6;EPPR=4341.61;GTI=0;LEN=1;MEANALT=1.10753;MQM=59.993;MQMR=59.9935;NS=93;NUMALT=1;ODDS=2.17202;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223029;QR=69765;RO=1998;RPL=3;RPP=13679;RPPR=4341.61;RPR=6307;RUN=1;SAF=1;SAP=13696.3;SAR=6309;SRF=0;SRP=4341.61;SRR=1998;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:20,24:20:707:24:852:-63.7551,0,-50.7093	1/1:118:0,117:0:0:117:4125:-371.075,-35.2205,0	0/1:147:72,75:72:2512:75:2629:-192.604,0,-182.079	1/1:230:1,229:1:36:229:8149:-729.829,-65.6386,0	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/1:13:9,4:9:316:4:144:-9.40023,0,-24.8655	1/1:88:0,88:0:0:88:3126:-281.568,-26.4906,0	0/1:143:66,76:66:2296:76:2703:-200.408,0,-163.793	0/1:113:76,37:76:2670:37:1328:-85.8058,0,-206.528	0/1:108:45,63:45:1579:63:2236:-168.99,0,-109.886	0/1:45:24,21:24:843:21:735:-52.9251,0,-62.6416	1/1:74:0,73:0:0:73:2562:-230.472,-21.9752,0	0/1:49:30,19:30:1042:19:667:-45.6042,0,-79.3375	0/1:72:32,40:32:1112:40:1389:-103.631,0,-78.7101	1/1:75:0,75:0:0:75:2619:-235.91,-22.5773,0	0/1:70:26,44:26:898:44:1559:-119.529,0,-60.0602	1/1:27:0,27:0:0:27:955:-86.2648,-8.12781,0	0/1:15:6,9:6:203:9:316:-24.2634,0,-14.0857	1/1:22:0,22:0:0:22:767:-69.3494,-6.62266,0	1/1:92:0,92:0:0:92:3165:-285.075,-27.6948,0	0/1:219:92,127:92:3197:127:4540:-342.841,0,-222.026	1/1:63:0,63:0:0:63:2214:-199.522,-18.9649,0	0/1:115:56,59:56:1954:59:2116:-156.09,0,-141.514	0/1:95:42,53:42:1484:53:1882:-141.059,0,-105.257	1/1:50:0,50:0:0:50:1757:-158.411,-15.0515,0	1/1:310:0,309:0:0:309:10969:-986.756,-93.0183,0	0/1:248:103,145:103:3599:145:5127:-386.921,0,-249.463	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	0/1:251:110,140:110:3892:140:4965:-371.385,0,-274.859	0/1:168:80,88:80:2783:88:3143:-232.522,0,-200.137	1/1:92:1,91:1:36:91:3251:-289.213,-24.0965,0	0/1:9:3,6:3:104:6:203:-15.8919,0,-6.99354	1/1:38:0,38:0:0:38:1346:-121.439,-11.4391,0	0/1:8:6,2:6:212:2:59:-3.1959,0,-17.0166	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:15:0,15:0:0:15:512:-46.4017,-4.51545,0	0/1:179:88,91:88:3085:91:3198:-234.159,0,-223.982	1/1:131:1,130:1:32:130:4629:-413.574,-36.2356,0	1/1:35:0,35:0:0:35:1217:-109.831,-10.5361,0	.:.:.:.:.:.:.:.	1/1:170:3,167:3:93:167:5911:-523.425,-42.4984,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:160:76,84:76:2677:84:2983:-220.539,0,-193.011	0/1:37:19,17:19:667:17:600:-43.1327,0,-49.1582	0/1:45:23,22:23:780:22:784:-57.3376,0,-56.9626	0/1:160:88,72:88:3042:72:2548:-181.405,0,-225.846	0/1:73:35,38:35:1231:38:1368:-101.446,0,-89.1181	1/1:119:0,119:0:0:119:4234:-381.241,-35.8226,0	1/1:141:0,141:0:0:141:4973:-447.723,-42.4452,0	0/1:145:77,68:77:2681:68:2440:-176.206,0,-197.883	0/1:99:63,36:63:2166:36:1248:-82.8171,0,-165.401	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:93:0,93:0:0:93:3297:-296.951,-27.9958,0	0/1:37:19,18:19:652:18:636:-46.4299,0,-47.8601	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/1:140:72,68:72:2543:68:2382:-172.492,0,-186.975	1/1:67:2,65:2:59:65:2233:-195.626,-14.5649,0	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:14:10,4:10:351:4:126:-7.43699,0,-27.7123	1/1:89:0,89:0:0:89:3151:-283.817,-26.7917,0	1/1:84:1,83:1:36:83:2911:-258.631,-21.6882,0	0/1:5:4,1:4:135:1:36:-2.09312,0,-10.9774	1/1:228:0,228:0:0:228:8059:-725.332,-68.6348,0	1/1:155:0,155:0:0:155:5453:-490.906,-46.6597,0	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	1/1:61:0,61:0:0:61:2153:-194.036,-18.3628,0	1/1:208:1,207:1:36:207:7359:-658.761,-59.016,0	1/1:137:2,134:2:72:134:4790:-424.42,-34.4632,0	1/1:25:0,25:0:0:25:875:-79.0661,-7.52575,0	1/1:75:0,75:0:0:75:2618:-235.867,-22.5773,0	1/1:41:0,40:0:0:40:1394:-125.396,-12.0412,0	0/1:16:7,9:7:239:9:320:-24.3259,0,-17.0262	1/1:188:0,188:0:0:188:6627:-596.5,-56.5936,0	0/1:102:62,40:62:2124:40:1396:-95.2292,0,-160.716	0/1:185:96,89:96:3353:89:3142:-227.317,0,-246.299	0/1:176:98,78:98:3441:78:2800:-199.258,0,-256.923	1/1:47:0,47:0:0:47:1650:-148.784,-14.1484,0	1/1:104:1,103:1:36:103:3630:-323.308,-27.7088,0	0/1:25:12,13:12:409:13:464:-34.5718,0,-29.6097	1/1:107:0,106:0:0:106:3768:-338.959,-31.9092,0	1/1:96:0,96:0:0:96:3403:-306.487,-28.8989,0	0/1:166:76,89:76:2679:89:3152:-233.876,0,-191.324	1/1:56:0,56:0:0:56:1962:-176.854,-16.8577,0	1/1:60:0,60:0:0:60:2109:-190.078,-18.0618,0	0/1:30:16,14:16:534:14:500:-36.3053,0,-39.3462	1/1:116:0,116:0:0:116:4043:-364.062,-34.9195,0	0/1:12:4,8:4:144:8:279:-21.8352,0,-9.70126	1/1:58:0,58:0:0:58:2017:-181.799,-17.4597,0	0/1:60:31,29:31:1066:29:1032:-75.1317,0,-78.1815	1/1:28:0,28:0:0:28:983:-88.7825,-8.42884,0	0/1:93:38,55:38:1333:55:1925:-145.527,0,-92.2718	0/1:55:37,18:37:1310:18:644:-41.7339,0,-101.643	1/1:124:0,124:0:0:124:4411:-397.162,-37.3277,0	1/1:75:0,75:0:0:75:2646:-238.387,-22.5773,0
chr06	1539116	.	G	A	42562	PASS	AB=0.503216;ABP=3.37347;AC=48;AF=0.255319;AN=188;AO=2056;CIGAR=1X;DP=8948;DPB=8948;DPRA=1.02261;EPP=1927.87;EPPR=6998.52;GTI=1;LEN=1;MEANALT=1;MQM=59.9489;MQMR=59.9801;NS=94;NUMALT=1;ODDS=0.217066;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73532;QR=245936;RO=6892;RPL=1703;RPP=1927.87;RPPR=6992.59;RPR=353;RUN=1;SAF=2056;SAP=4467.56;SAR=0;SRF=6891;SRP=14960.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:6,10:6:212:10:356:-27.5648,0,-14.6083	0/0:197:197,0:197:7076:0:0:0,-59.3029,-636.627	0/1:116:53,63:53:1881:63:2260:-168.743,0,-134.647	0/0:158:157,1:157:5636:1:36:0,-43.9645,-503.761	0/1:55:29,26:29:1021:26:932:-67.6422,0,-75.6436	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:105:105,0:105:3742:0:0:0,-31.6081,-336.978	0/1:132:65,67:65:2313:67:2398:-176.341,0,-168.692	0/1:74:35,39:35:1256:39:1404:-104.383,0,-91.0691	0/1:125:69,56:69:2468:56:2012:-143.724,0,-184.745	0/1:132:78,54:78:2785:54:1940:-135.14,0,-211.153	0/0:94:94,0:94:3353:0:0:0,-28.2968,-301.986	0/1:87:39,48:39:1404:48:1724:-129.256,0,-100.47	0/1:147:74,73:74:2603:73:2624:-192.155,0,-190.262	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/1:76:38,38:38:1351:38:1356:-99.4622,0,-99.0113	0/0:130:130,0:130:4638:0:0:0,-39.1339,-417.572	0/1:84:40,44:40:1440:44:1584:-117.459,0,-104.611	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:217:217,0:217:7738:0:0:0,-65.3235,-696.45	0/1:123:63,60:63:2211:60:2137:-155.567,0,-162.224	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:31:9,22:9:309:22:777:-60.9184,0,-18.8088	0/1:73:37,36:37:1332:36:1296:-94.955,0,-98.2072	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:299:299,0:299:10701:0:0:0,-90.008,-962.724	0/1:160:78,82:78:2770:82:2948:-217.388,0,-201.374	0/0:36:36,0:36:1266:0:0:0,-10.8371,-114.239	0/1:229:120,109:120:4278:109:3916:-283.695,0,-316.26	0/1:96:40,56:40:1421:56:2007:-152.004,0,-99.2865	0/0:97:96,1:96:3429:1:36:0,-25.6016,-305.223	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:5:2,3:2:72:3:93:-7.17158,0,-5.33157	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:239:125,114:125:4485:114:4077:-295.169,0,-331.87	0/0:143:143,0:143:5061:0:0:0,-43.0473,-455.632	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.565	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/1:35:23,12:23:828:12:432:-28.6851,0,-64.3081	0/1:119:63,56:63:2268:56:2016:-145.89,0,-168.559	0/1:88:56,32:56:1997:32:1148:-77.1392,0,-153.511	0/1:67:29,38:29:1020:38:1339:-100.639,0,-71.9404	0/1:94:49,45:49:1760:45:1605:-116.441,0,-130.387	0/0:146:142,4:142:5068:4:144:0,-30.6368,-442.95	0/0:104:104,0:104:3713:0:0:0,-31.3071,-334.371	0/1:167:76,91:76:2713:91:3272:-244.427,0,-194.14	0/1:114:46,68:46:1626:68:2444:-185.896,0,-112.307	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/1:29:16,13:16:568:13:445:-31.6431,0,-42.722	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:130:55,75:55:1968:75:2673:-201.606,0,-138.261	0/0:27:27,0:27:938:0:0:0,-8.12781,-84.7293	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/0:190:187,3:187:6667:3:108:0,-47.1205,-590.03	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:242:241,1:241:8558:1:36:0,-69.251,-766.248	0/0:116:113,3:113:4011:3:108:0,-24.8443,-351.101	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.016	0/0:164:164,0:164:5896:0:0:0,-49.3689,-530.747	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:62:62,0:62:2197:0:0:0,-18.6639,-197.994	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:86:46,40:46:1629:40:1409:-101.217,0,-121.008	0/1:150:65,85:65:2313:85:3045:-228.342,0,-163.275	0/1:181:95,86:95:3380:86:3072:-222.22,0,-249.928	0/0:110:110,0:110:3892:0:0:0,-33.1133,-350.471	0/0:115:114,1:114:4077:1:36:0,-31.0202,-363.516	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/0:113:113,0:113:4043:0:0:0,-34.0164,-364.057	0/0:145:145,0:145:5129:0:0:0,-43.6493,-461.75	0/1:189:88,101:88:3141:101:3594:-266.77,0,-226.02	0/0:120:120,0:120:4295:0:0:0,-36.1236,-386.727	0/0:123:123,0:123:4389:0:0:0,-37.0267,-395.183	0/1:122:58,64:58:2084:64:2292:-169.816,0,-151.104	0/0:171:170,1:170:6085:1:36:0,-47.8779,-544.151	0/1:42:24,18:24:834:18:644:-45.6473,0,-62.7298	0/0:112:112,0:112:4001:0:0:0,-33.7154,-360.278	0/1:71:41,30:41:1476:30:1080:-76.1401,0,-111.763	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.512	0/1:156:78,78:78:2740:78:2785:-203.928,0,-199.877	0/1:96:41,55:41:1472:55:1916:-143.811,0,-103.877	0/0:78:78,0:78:2759:0:0:0,-23.4803,-248.548	0/0:149:149,0:149:5360:0:0:0,-44.8535,-482.529
chr06	1539176	.	C	T	169680	PASS	AB=0.481885;ABP=18.4298;AC=138;AF=0.734043;AN=188;AO=8029;CIGAR=1X;DP=10862;DPB=10862;DPRA=78.6884;EPP=17178.2;EPPR=6091.93;GTI=0;LEN=1;MEANALT=1.05435;MQM=59.9623;MQMR=59.9961;NS=94;NUMALT=1;ODDS=0.660177;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286759;QR=100905;RO=2828;RPL=7999;RPP=17178.2;RPPR=6091.93;RPR=30;RUN=1;SAF=0;SAP=17437.8;SAR=8029;SRF=0;SRP=6143.93;SRR=2828;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:95:59,36:59:2099:36:1288:-86.6872,0,-160.581	1/1:97:0,97:0:0:97:3459:-311.522,-29.1999,0	0/1:180:89,91:89:3175:91:3256:-239.075,0,-231.789	1/1:259:0,259:0:0:259:9258:-833.145,-77.9668,0	0/1:48:20,28:20:711:28:1004:-76.2264,0,-49.8662	0/1:32:12,20:12:432:20:705:-54.1407,0,-29.5882	1/1:114:0,114:0:0:114:4075:-366.937,-34.3174,0	0/1:125:55,70:55:1959:70:2504:-187.984,0,-138.956	0/1:142:69,73:69:2476:73:2553:-187.274,0,-180.347	0/1:95:53,42:53:1880:42:1493:-106.065,0,-140.881	0/1:42:23,18:23:828:18:644:-45.5883,0,-62.1421	1/1:130:0,130:0:0:130:4660:-419.561,-39.1339,0	0/1:105:68,37:68:2416:37:1328:-88.2141,0,-186.089	0/1:132:68,64:68:2423:64:2292:-166.805,0,-178.59	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	0/1:61:31,30:31:1103:30:1080:-79.1504,0,-81.217	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:36:14,22:14:504:22:784:-60.0468,0,-34.861	1/1:45:0,45:0:0:45:1601:-144.378,-13.5464,0	1/1:207:0,207:0:0:207:7337:-660.384,-62.3132,0	0/1:239:113,126:113:4027:126:4517:-334.75,0,-290.673	1/1:81:0,81:0:0:81:2892:-259.885,-24.3834,0	0/1:199:119,79:119:4231:79:2798:-192.092,0,-321.006	0/1:88:46,42:46:1640:42:1505:-109.254,0,-121.398	1/1:117:0,117:0:0:117:4176:-376.02,-35.2205,0	1/1:264:0,264:0:0:264:9430:-848.658,-79.4719,0	0/1:346:169,177:169:6043:177:6341:-466.553,0,-439.817	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:348:194,154:194:6956:154:5459:-386.647,0,-521.345	0/1:101:63,38:63:2256:38:1368:-93.0168,0,-172.899	1/1:216:0,216:0:0:216:7718:-694.65,-65.0225,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	1/1:29:0,29:0:0:29:1024:-92.4726,-8.72987,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:252:127,125:127:4559:125:4472:-326.79,0,-334.614	1/1:137:0,137:0:0:137:4896:-440.79,-41.2411,0	1/1:54:0,54:0:0:54:1925:-173.526,-16.2556,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	1/1:157:4,153:4:144:153:5472:-479.295,-33.9481,0	1/1:53:0,53:0:0:53:1904:-171.508,-15.9546,0	0/1:297:150,146:150:5352:146:5220:-380.472,0,-392.348	0/1:74:40,34:40:1432:34:1208:-86.7499,0,-106.901	0/1:62:26,36:26:932:36:1279:-96.7486,0,-65.535	0/1:152:68,84:68:2408:84:3004:-224.827,0,-171.218	0/1:135:81,54:81:2887:54:1936:-133.877,0,-219.427	1/1:181:1,180:1:36:180:6462:-578.064,-50.8882,0	1/1:142:0,142:0:0:142:5067:-456.174,-42.7463,0	0/1:130:68,62:68:2415:62:2201:-159.221,0,-178.472	0/1:127:64,63:64:2272:63:2249:-164.441,0,-166.512	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:188:0,188:0:0:188:6738:-606.492,-56.5936,0	0/1:71:49,22:49:1736:22:792:-50.2325,0,-135.149	0/1:19:14,5:14:504:5:176:-10.4654,0,-39.9785	0/1:163:71,92:71:2524:92:3284:-246.71,0,-178.345	1/1:87:0,87:0:0:87:3092:-278.506,-26.1896,0	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:19:8,11:8:284:11:396:-30.2632,0,-20.1838	1/1:105:0,105:0:0:105:3728:-335.721,-31.6082,0	1/1:95:2,93:2:72:93:3327:-292.807,-21.7611,0	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:170:0,170:0:0:170:6043:-543.969,-51.1751,0	1/1:187:0,187:0:0:187:6707:-603.702,-56.2926,0	1/1:91:0,91:0:0:91:3248:-292.54,-27.3937,0	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	1/1:236:6,230:6:212:230:8201:-718.649,-51.6183,0	1/1:201:2,199:2:72:199:7116:-633.658,-53.6703,0	1/1:40:0,40:0:0:40:1421:-128.187,-12.0412,0	1/1:80:0,80:0:0:80:2857:-257.367,-24.0824,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:18:12,6:12:432:6:212:-14.0063,0,-33.8027	1/1:114:0,114:0:0:114:4072:-366.666,-34.3174,0	0/1:189:107,82:107:3827:82:2936:-207.58,0,-287.732	0/1:345:184,160:184:6557:160:5700:-409.206,0,-486.295	0/1:240:124,116:124:4420:116:4145:-300.987,0,-325.727	1/1:120:0,120:0:0:120:4297:-386.905,-36.1236,0	1/1:139:6,133:6:212:133:4715:-405.086,-22.4184,0	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	1/1:148:1,146:1:36:146:5222:-466.519,-41.013,0	1/1:111:0,111:0:0:111:3945:-355.243,-33.4143,0	0/1:289:128,161:128:4588:161:5732:-428.999,0,-326.087	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:91:0,91:0:0:91:3256:-293.261,-27.3937,0	0/1:47:21,26:21:752:26:936:-70.4111,0,-53.8578	1/1:146:2,144:2:72:144:5168:-458.422,-37.1137,0	0/1:30:12,18:12:419:18:644:-49.2597,0,-29.0118	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	0/1:80:41,39:41:1468:39:1400:-102.217,0,-108.334	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	0/1:69:30,39:30:1068:39:1387:-104.356,0,-75.661	0/1:117:74,43:74:2626:43:1536:-103.313,0,-201.363	1/1:140:0,140:0:0:140:4981:-448.369,-42.1442,0	1/1:146:2,144:2:72:144:5168:-458.42,-37.1137,0
chr06	1545635	.	A	G	39267.1	PASS	AB=0.523094;ABP=23.3708;AC=47;AF=0.25;AN=188;AO=2314;CIGAR=1X;DP=9275;DPB=9275;DPRA=1.08044;EPP=5027.8;EPPR=15112.1;GTI=0;LEN=1;MEANALT=1.05263;MQM=59.9823;MQMR=59.9908;NS=94;NUMALT=1;ODDS=1.0916;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82584;QR=246846;RO=6958;RPL=0;RPP=5027.8;RPPR=15112.1;RPR=2314;RUN=1;SAF=2314;SAP=5027.8;SAR=0;SRF=6958;SRP=15112.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:79:43,36:43:1540:36:1277:-91.4506,0,-115.112	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/1:231:104,127:104:3671:127:4495:-335.181,0,-261.054	0/0:283:283,0:283:10068:0:0:0,-85.1915,-906.052	0/1:89:46,43:46:1629:43:1543:-112.371,0,-120.105	0/1:44:17,27:17:597:27:964:-73.8315,0,-40.8108	0/0:108:107,1:107:3753:1:36:0,-28.913,-334.369	0/1:151:72,79:72:2554:79:2832:-208.643,0,-184.652	0/1:97:36,60:36:1265:60:2118:-161.715,0,-84.9797	0/1:83:39,44:39:1385:44:1580:-117.506,0,-99.9614	0/1:66:33,33:33:1184:33:1188:-87.3606,0,-87.0003	0/0:124:124,0:124:4405:0:0:0,-37.3277,-396.624	0/1:82:32,50:32:1148:50:1766:-134.535,0,-78.9454	0/1:50:16,34:16:576:34:1220:-95.0553,0,-37.1235	0/0:92:92,0:92:3289:0:0:0,-27.6948,-296.228	0/1:104:78,26:78:2754:26:923:-52.0796,0,-216.793	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:32:19,13:19:676:13:468:-32.8267,0,-51.535	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:186:186,0:186:6550:0:0:0,-55.9916,-589.585	0/1:220:107,113:107:3802:113:4056:-298.997,0,-276.15	0/0:179:179,0:179:6299:0:0:0,-53.8844,-567.004	0/1:140:64,76:64:2284:76:2697:-200.83,0,-163.678	0/1:48:26,22:26:920:22:764:-54.628,0,-68.6676	0/0:113:113,0:113:4018:0:0:0,-34.0164,-361.808	0/0:232:231,1:231:8139:1:36:0,-66.2407,-728.933	0/1:308:151,157:151:5298:157:5621:-413.292,0,-384.239	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:244:107,136:107:3802:136:4845:-362.695,0,-268.867	0/1:135:77,58:77:2737:58:2068:-145.752,0,-205.933	0/0:157:156,1:156:5551:1:36:0,-43.6634,-496.114	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:21:21,0:21:733:0:0:0,-6.32163,-66.2897	0/1:203:90,113:90:3216:113:4033:-302.049,0,-228.554	0/0:143:143,0:143:5101:0:0:0,-43.0473,-459.234	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.759	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:151:149,2:149:5310:2:72:0,-38.6188,-471.197	0/0:36:36,0:36:1269:0:0:0,-10.8371,-114.511	0/1:185:65,120:65:2328:120:4300:-331.486,0,-154.089	0/1:88:40,48:40:1436:48:1712:-127.875,0,-103.047	0/1:66:31,35:31:1112:35:1252:-93.1169,0,-80.5234	0/1:189:81,108:81:2881:108:3853:-290.071,0,-202.63	0/1:122:46,76:46:1636:76:2717:-208.046,0,-110.803	0/0:199:199,0:199:7041:0:0:0,-59.905,-633.753	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/1:108:68,40:68:2429:40:1424:-95.9462,0,-186.353	0/1:103:77,25:77:2684:25:896:-50.0396,0,-210.885	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:152:152,0:152:5380:0:0:0,-45.7566,-484.331	0/1:63:32,31:32:1125:31:1116:-81.7868,0,-82.5911	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:144:89,55:89:3184:55:1945:-131.976,0,-243.436	0/0:71:71,0:71:2507:0:0:0,-21.3731,-225.878	0/1:15:5,10:5:176:10:360:-28.2289,0,-11.6696	0/1:5:3,2:3:108:2:57:-3.90816,0,-8.57002	0/0:87:87,0:87:3086:0:0:0,-26.1896,-277.966	0/0:82:81,1:81:2896:1:36:0,-21.0862,-257.278	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:192:192,0:192:6774:0:0:0,-57.7978,-609.735	0/0:152:149,3:149:5313:3:108:0,-35.6814,-468.23	0/0:49:49,0:49:1726:0:0:0,-14.7505,-155.621	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.626	0/0:143:141,2:141:4969:2:72:0,-36.2106,-440.522	0/0:156:155,1:155:5526:1:36:0,-43.3624,-493.866	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.988	0/0:108:108,0:108:3781:0:0:0,-32.5112,-340.487	0/0:49:49,0:49:1726:0:0:0,-14.7505,-155.621	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:159:159,0:159:5632:0:0:0,-47.8638,-507.001	0/1:116:52,64:52:1841:64:2296:-171.982,0,-131.049	0/1:140:65,75:65:2298:75:2664:-197.86,0,-164.934	0/1:134:68,66:68:2391:66:2346:-171.059,0,-175.105	0/0:131:131,0:131:4628:0:0:0,-39.4349,-416.682	0/0:89:87,2:87:3108:2:67:0,-20.4288,-273.58	0/1:14:6,8:6:212:8:284:-21.6889,0,-15.2104	0/0:89:89,0:89:3139:0:0:0,-26.7917,-282.734	0/0:131:131,0:131:4670:0:0:0,-39.4349,-420.46	0/1:89:41,48:41:1445:48:1713:-127.662,0,-103.552	0/0:63:63,0:63:2237:0:0:0,-18.9649,-201.592	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.492	0/1:55:25,30:25:892:30:1076:-80.5962,0,-64.043	0/0:129:128,1:128:4562:1:36:0,-35.2346,-407.109	0/1:26:9,17:9:320:17:612:-47.5867,0,-21.3156	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:81:37,44:37:1320:44:1580:-118.108,0,-94.7185	0/0:41:41,0:41:1445:0:0:0,-12.3422,-130.344	0/1:85:44,41:44:1572:41:1476:-107.549,0,-116.184	0/1:98:19,79:19:680:79:2832:-225.618,0,-32.0282	0/0:75:75,0:75:2620:0:0:0,-22.5772,-236.043	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.286
chr06	1587859	.	A	G	40581	PASS	AB=0.519923;ABP=19.1906;AC=44;AF=0.234043;AN=188;AO=2468;CIGAR=1X;DP=11166;DPB=11166;DPRA=1.37546;EPP=5362.2;EPPR=18884;GTI=2;LEN=1;MEANALT=1.05172;MQM=59.9992;MQMR=60;NS=94;NUMALT=1;ODDS=1.16077;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86900;QR=308409;RO=8695;RPL=2468;RPP=5362.2;RPPR=18884;RPR=0;RUN=1;SAF=2468;SAP=5362.2;SAR=0;SRF=8695;SRP=18884;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:9,28:9:316:28:984:-77.7334,0,-17.6407	0/0:181:181,0:181:6395:0:0:0,-54.4864,-575.647	0/1:158:72,86:72:2567:86:3067:-228.696,0,-183.717	0/0:239:239,0:239:8483:0:0:0,-71.9462,-763.478	0/1:101:40,61:40:1406:61:2161:-164.352,0,-96.4317	0/1:26:13,13:13:460:13:455:-33.4552,0,-33.9086	0/0:117:117,0:117:4154:0:0:0,-35.2205,-374.045	0/1:208:111,97:111:3947:97:3442:-247.38,0,-292.81	0/1:43:19,24:19:676:24:856:-64.4168,0,-48.2237	0/1:160:72,88:72:2576:88:3046:-226.203,0,-183.925	0/1:51:24,27:24:852:27:959:-71.2729,0,-61.6479	0/0:68:68,0:68:2373:0:0:0,-20.47,-213.829	0/1:77:44,33:44:1576:33:1155:-81.0763,0,-118.952	0/1:92:39,53:39:1396:53:1836:-137.822,0,-98.2443	0/0:64:64,0:64:2234:0:0:0,-19.2659,-201.324	0/1:49:27,22:27:951:22:776:-55.4117,0,-71.1538	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.773	0/1:73:41,32:41:1468:32:1136:-80.5737,0,-110.441	0/0:37:37,0:37:1294:0:0:0,-11.1381,-116.76	0/0:277:277,0:277:9874:0:0:0,-83.3853,-888.608	0/1:136:72,64:72:2535:64:2250:-161.823,0,-187.463	0/0:177:177,0:177:6311:0:0:0,-53.2823,-568.085	0/1:136:76,60:76:2680:60:2121:-150.217,0,-200.507	0/1:209:102,107:102:3586:107:3796:-278.924,0,-260.034	0/0:68:68,0:68:2399:0:0:0,-20.47,-216.168	0/0:500:499,1:499:17724:1:36:0,-146.917,-1591.19	0/1:236:106,130:106:3760:130:4590:-342.225,0,-267.56	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.169	0/1:257:118,139:118:4191:139:4960:-369.185,0,-300.01	0/1:262:124,137:124:4418:137:4818:-354.998,0,-319.013	0/0:173:171,1:171:6034:1:36:0,-48.5387,-539.573	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/1:10:8,2:8:288:2:68:-3.44741,0,-23.2571	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:169:79,90:79:2786:90:3125:-230.605,0,-200.108	0/0:333:331,2:331:11827:2:72:0,-93.4063,-1057.46	0/0:41:41,0:41:1444:0:0:0,-12.3422,-130.256	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:186:181,5:181:6437:5:180:0,-39.4395,-562.869	0/0:23:22,1:22:771:1:36:0,-3.32541,-66.112	0/1:130:58,71:58:2055:71:2475:-183.808,0,-146.028	0/1:98:54,44:54:1906:44:1541:-109.479,0,-142.315	0/1:53:16,37:16:572:37:1275:-99.0922,0,-35.8588	0/1:136:58,78:58:2063:78:2728:-204.822,0,-145	0/1:175:67,108:67:2396:108:3784:-288.081,0,-163.217	0/0:228:225,3:225:8001:3:108:0,-58.5597,-710.042	0/0:130:128,2:128:4567:2:72:0,-32.2972,-404.36	0/1:261:117,144:117:4149:144:5085:-379.229,0,-295.026	0/1:187:93,94:93:3328:94:3343:-244.793,0,-243.445	0/1:15:10,5:10:356:5:180:-12.0366,0,-27.8658	0/0:187:187,0:187:6582:0:0:0,-56.2926,-592.472	0/1:26:10,16:10:343:16:572:-43.9866,0,-23.3738	0/1:22:11,11:11:388:11:396:-29.3601,0,-28.6347	0/1:168:75,93:75:2668:93:3260:-243.045,0,-189.794	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:30:19,11:19:680:11:388:-26.2265,0,-52.4983	0/0:104:104,0:104:3689:0:0:0,-31.3071,-332.214	0/0:118:118,0:118:4207:0:0:0,-35.5215,-378.812	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/0:363:362,1:362:12835:1:36:0,-105.676,-1151.38	0/0:301:296,5:296:10494:5:180:0,-74.058,-927.836	0/0:102:102,0:102:3592:0:0:0,-30.7051,-323.489	0/0:92:92,0:92:3274:0:0:0,-27.6948,-294.88	0/0:224:221,3:221:7832:3:108:0,-57.3555,-694.842	0/0:147:147,0:147:5227:0:0:0,-44.2514,-470.572	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:92:92,0:92:3255:0:0:0,-27.6948,-293.173	0/0:69:69,0:69:2443:0:0:0,-20.7711,-220.126	0/1:43:22,21:22:780:21:733:-53.3458,0,-57.5787	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/1:71:41,30:41:1468:30:1068:-75.0589,0,-111.043	0/1:176:102,74:102:3615:74:2606:-181.807,0,-272.577	0/1:208:111,97:111:3946:97:3464:-249.359,0,-292.719	0/0:176:175,1:175:6254:1:36:0,-49.383,-559.356	0/0:157:156,1:156:5514:1:36:0,-43.6634,-492.793	0/1:7:4,3:4:135:3:99:-7.12937,0,-10.3753	0/0:151:151,0:151:5344:0:0:0,-45.4555,-481.098	0/0:154:154,0:154:5449:0:0:0,-46.3586,-490.545	0/0:219:219,0:219:7781:0:0:0,-65.9256,-700.327	0/0:119:119,0:119:4187:0:0:0,-35.8226,-377.019	0/0:71:71,0:71:2519:0:0:0,-21.3731,-226.962	0/1:121:56,65:56:1981:65:2258:-167.056,0,-142.138	0/0:110:109,1:109:3832:1:36:0,-29.515,-341.482	0/1:37:19,18:19:672:18:623:-45.255,0,-49.6687	0/0:76:76,0:76:2690:0:0:0,-22.8783,-242.345	0/1:67:32,35:32:1122:35:1212:-89.211,0,-81.1173	0/0:42:42,0:42:1467:0:0:0,-12.6433,-132.324	0/1:94:52,42:52:1812:42:1431:-100.782,0,-135.065	0/1:64:19,45:19:663:45:1590:-124.123,0,-40.7275	0/0:195:195,0:195:6939:0:0:0,-58.7008,-624.581	0/0:97:96,1:96:3386:1:36:0,-25.6016,-301.36
chr06	1616612	.	T	A	68194	PASS	AB=0.488889;ABP=5.18177;AC=140;AF=0.744681;AN=188;AO=3245;CIGAR=1X;DP=4294;DPB=4294;DPRA=20.19;EPP=7049.44;EPPR=2272.2;GTI=2;LEN=1;MEANALT=1.03297;MQM=59.89;MQMR=59.9895;NS=94;NUMALT=1;ODDS=0.0783161;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115894;QR=37388;RO=1045;RPL=0;RPP=7049.44;RPPR=2272.2;RPR=3245;RUN=1;SAF=3245;SAP=7049.44;SAR=0;SRF=1045;SRP=2272.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:54:33,21:33:1160:21:737:-50.395,0,-88.4483	1/1:89:0,89:0:0:89:3177:-286.139,-26.7917,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:57:27,30:27:972:30:1076:-79.9941,0,-70.6392	0/1:15:7,8:7:248:8:280:-21.0192,0,-18.1487	0/1:62:25,37:25:892:37:1332:-101.516,0,-61.9358	0/1:72:35,37:35:1260:37:1328:-98.1481,0,-92.0313	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	0/1:69:30,39:30:1072:39:1400:-105.513,0,-76.0214	0/1:88:41,47:41:1457:47:1688:-125.716,0,-104.933	1/1:67:0,66:0:0:66:2338:-210.317,-19.868,0	0/1:64:32,32:32:1140:32:1148:-84.0937,0,-83.6433	1/1:37:0,37:0:0:37:1317:-118.83,-11.1381,0	0/1:47:20,27:20:720:27:953:-71.9349,0,-50.9804	1/1:34:0,34:0:0:34:1224:-110.466,-10.235,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	0/1:84:33,49:33:1184:49:1745:-132.158,0,-81.8241	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:25:17,8:17:593:8:288:-18.7417,0,-46.169	0/1:37:15,22:15:536:22:788:-60.1067,0,-37.4367	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:101:0,101:0:0:101:3590:-323.305,-30.404,0	0/1:71:34,37:34:1220:37:1332:-98.0311,0,-88.7337	1/1:31:0,31:0:0:31:1116:-100.747,-9.33193,0	0/1:118:52,66:52:1872:66:2364:-177.496,0,-133.238	0/1:66:50,16:50:1773:16:557:-30.5876,0,-139.983	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:123:56,67:56:2008:67:2367:-176.26,0,-143.967	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:59:2,57:2:72:57:2037:-176.735,-10.924,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:45:29,16:29:1032:16:557:-36.9092,0,-79.6471	0/1:53:24,29:24:860:29:1040:-77.934,0,-61.7672	0/1:52:21,31:21:756:31:1104:-84.0171,0,-52.7137	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	0/1:30:22,8:22:792:8:288:-17.2365,0,-62.5748	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:87:43,44:43:1529:44:1572:-114.954,0,-111.711	0/1:28:7,21:7:252:21:756:-59.9384,0,-14.5823	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:37:24,13:24:864:13:453:-29.9615,0,-66.9445	0/1:9:4,5:4:144:5:150:-10.9769,0,-10.6043	0/1:58:34,24:34:1208:24:856:-59.901,0,-91.5663	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	1/1:39:0,39:0:0:39:1389:-125.309,-11.7402,0	1/1:69:0,69:0:0:69:2446:-220.392,-20.7711,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:93:1,92:1:36:92:3258:-289.84,-24.3975,0	1/1:69:0,69:0:0:69:2456:-221.292,-20.7711,0	1/1:47:0,47:0:0:47:1688:-152.202,-14.1484,0	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	1/1:54:0,54:0:0:54:1925:-173.525,-16.2556,0	1/1:56:0,56:0:0:56:1997:-180.002,-16.8577,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:28:0,28:0:0:28:989:-89.322,-8.42884,0	1/1:53:0,53:0:0:53:1900:-171.277,-15.9546,0	0/1:14:10,4:10:356:4:144:-9.0992,0,-28.1668	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:58:39,19:39:1400:19:672:-43.3471,0,-108.839	0/1:47:32,15:32:1148:15:540:-34.7881,0,-89.4814	0/1:70:34,36:34:1220:36:1277:-94.159,0,-89.0347	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:91:1,90:1:36:90:3217:-286.153,-23.7955,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:52:0,52:0:0:52:1868:-167.772,-15.6536,0	1/1:51:2,49:2:72:49:1749:-150.855,-8.51581,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:52:0,52:0:0:52:1854:-167.139,-15.6536,0	1/1:81:0,81:0:0:81:2897:-260.964,-24.3834,0	0/1:41:16,25:16:572:25:892:-68.2551,0,-39.4712	1/1:96:0,96:0:0:96:3437:-308.327,-28.8989,0	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	1/1:52:0,52:0:0:52:1838:-165.697,-15.6536,0	0/1:69:36,33:36:1296:33:1184:-86.0972,0,-96.1729	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	0/1:108:58,50:58:2080:50:1796:-129.411,0,-154.959	0/1:53:33,19:33:1188:19:680:-45.5159,0,-91.2152	1/1:116:0,116:0:0:116:4141:-372.855,-34.9195,0	1/1:86:0,86:0:0:86:3069:-276.437,-25.8886,0
chr06	1630779	.	AGCGT	AGCGG	341094	PASS	AB=0.492499;ABP=5.68154;AC=147;AF=0.781915;AN=188;AO=15647;CIGAR=4M1X;DP=18604;DPB=18624.8;DPRA=0;EPP=33980;EPPR=6080.96;GTI=2;LEN=1;MEANALT=1.74468;MQM=59.506;MQMR=59.9943;NS=94;NUMALT=1;ODDS=2.93841;PAIRED=0;PAIREDR=0;PAO=52;PQA=1394;PQR=0;PRO=0;QA=558319;QR=98702;RO=2799;RPL=0;RPP=33980;RPPR=6080.96;RPR=15647;RUN=1;SAF=15647;SAP=33980;SAR=0;SRF=2799;SRP=6080.96;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:43,19:43:1522:19:665:-41.5007,0,-118.61	1/1:211:2,209:2:72:209:7469:-665.037,-56.6806,0	0/1:159:77,79:77:2715:79:2832:-207.735,0,-197.275	1/1:248:0,239:0:0:239:8557:-769.73,-71.9462,0	0/1:123:62,61:62:2188:61:2169:-158.434,0,-160.16	0/1:36:26,9:26:912:9:324:-18.61,0,-71.4992	1/1:172:0,171:0:0:171:6108:-549.337,-51.4761,0	0/1:228:112,113:112:3923:113:4026:-294.325,0,-285.178	0/1:150:82,68:82:2906:68:2440:-174.211,0,-216.444	0/1:170:98,72:98:3440:72:2569:-180.182,0,-258.642	0/1:89:52,36:52:1851:36:1288:-89.3708,0,-140.02	1/1:83:0,78:0:0:78:2776:-249.534,-23.4803,0	0/1:93:47,43:47:1644:43:1536:-111.021,0,-120.794	0/1:71:39,32:39:1377:32:1133:-80.9012,0,-102.855	1/1:58:0,55:0:0:55:1976:-177.679,-16.5567,0	0/1:65:34,31:34:1202:31:1108:-80.4548,0,-88.9192	1/1:60:0,59:0:0:59:2124:-191.052,-17.7608,0	0/1:82:41,41:41:1443:41:1461:-107.091,0,-105.48	1/1:173:0,168:0:0:168:6004:-539.863,-50.573,0	1/1:277:3,273:3:107:273:9785:-870.395,-73.5062,0	0/1:195:103,92:103:3635:92:3296:-238.138,0,-268.658	1/1:110:0,109:0:0:109:3885:-348.633,-32.8123,0	0/1:94:50,44:50:1763:44:1561:-112.333,0,-130.597	0/1:186:96,87:96:3383:87:3105:-224.242,0,-249.272	1/1:105:1,104:1:36:104:3732:-332.45,-28.0099,0	1/1:421:2,419:2:61:419:14982:-1340.68,-121.031,0	0/1:337:152,185:152:5383:185:6587:-491.04,0,-383.04	1/1:33:0,33:0:0:33:1188:-107.008,-9.93399,0	0/1:453:273,179:273:9660:179:6387:-438.421,0,-732.941	0/1:196:106,86:106:3751:86:3069:-218.224,0,-279.64	1/1:127:1,126:1:36:126:4497:-401.258,-34.6325,0	1/1:610:3,606:3:108:606:21610:-1933.61,-173.792,0	1/1:341:1,337:1:36:337:12026:-1078.3,-98.5097,0	1/1:889:6,880:6:215:880:31413:-2805.44,-247.413,0	1/1:945:9,930:9:311:930:33144:-2951.01,-254.74,0	1/1:1443:1,1439:1:36:1439:51267:-4605.38,-430.275,0	0/1:174:93,76:93:3298:76:2720:-193.771,0,-245.83	1/1:176:0,173:0:0:173:6182:-555.971,-52.0782,0	1/1:467:0,464:0:0:464:16554:-1486.87,-139.678,0	0/1:15:9,6:9:315:6:210:-14.7251,0,-24.1718	1/1:154:0,154:0:0:154:5505:-495.42,-46.3586,0	1/1:159:0,156:0:0:156:5581:-502.044,-46.9607,0	0/1:183:91,92:91:3210:92:3273:-239.573,0,-233.917	0/1:77:41,32:41:1456:32:1140:-80.557,0,-108.988	0/1:62:26,36:26:904:36:1280:-96.8361,0,-63.0092	0/1:158:80,78:80:2787:78:2784:-203.11,0,-203.39	0/1:176:79,96:79:2780:96:3455:-258.088,0,-197.401	1/1:248:0,243:0:0:243:8662:-778.992,-73.1503,0	1/1:170:0,168:0:0:168:5990:-538.426,-50.573,0	0/1:205:99,104:99:3524:104:3717:-273.25,0,-255.903	0/1:191:77,114:77:2723:114:4088:-310.53,0,-187.758	1/1:682:8,664:8:282:664:23699:-2104.93,-176.934,0	1/1:175:0,175:0:0:175:6268:-564.032,-52.6803,0	0/1:45:24,20:24:829:20:716:-51.0753,0,-61.3195	0/1:32:12,20:12:423:20:720:-55.482,0,-28.7729	0/1:142:77,65:77:2711:65:2332:-167.358,0,-201.487	1/1:62:0,62:0:0:62:2205:-198.64,-18.6639,0	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/1:21:6,10:6:208:10:360:-27.5707,0,-13.891	1/1:59:0,59:0:0:59:2093:-188.624,-17.7608,0	1/1:78:2,76:2:72:76:2711:-237.339,-16.6436,0	0/1:30:14,16:14:499:16:576:-43.1394,0,-36.2151	1/1:79:0,79:0:0:79:2825:-254.477,-23.7814,0	1/1:254:2,252:2:72:252:8962:-798.926,-69.6249,0	1/1:126:0,124:0:0:124:4380:-393.983,-37.3277,0	1/1:149:0,149:0:0:149:5322:-478.846,-44.8535,0	1/1:215:5,205:5:170:205:7273:-638.938,-47.9321,0	1/1:121:3,118:3:105:118:4191:-367.483,-26.6688,0	1/1:181:0,179:0:0:179:6400:-575.551,-53.8844,0	1/1:116:0,115:0:0:115:4094:-368.014,-34.6185,0	1/1:79:0,77:0:0:77:2756:-247.933,-23.1793,0	1/1:415:15,393:15:530:393:13956:-1206.9,-75.147,0	1/1:75:0,73:0:0:73:2605:-234.148,-21.9752,0	0/1:90:34,54:34:1207:54:1944:-148.317,0,-82.0572	0/1:217:130,87:130:4562:87:3074:-211.555,0,-345.429	0/1:241:115,126:115:4069:126:4520:-334.411,0,-293.853	1/1:159:0,159:0:0:159:5636:-507.12,-47.8638,0	1/1:153:2,150:2:71:150:5353:-475.089,-39.3727,0	1/1:594:9,583:9:316:583:20844:-1845.36,-149.961,0	1/1:165:0,164:0:0:164:5846:-525.769,-49.3689,0	1/1:181:0,179:0:0:179:6387:-573.951,-53.8844,0	1/1:351:0,349:0:0:349:12436:-1118.25,-105.059,0	1/1:74:0,74:0:0:74:2654:-239.093,-22.2762,0	1/1:79:0,77:0:0:77:2772:-249.363,-23.1793,0	0/1:75:44,29:44:1565:29:1040:-71.5466,0,-118.778	1/1:127:0,127:0:0:127:4545:-409.117,-38.2308,0	0/1:44:26,18:26:910:18:640:-44.6807,0,-68.9689	1/1:76:0,76:0:0:76:2720:-245.019,-22.8783,0	0/1:58:34,24:34:1201:24:852:-59.5221,0,-90.9355	1/1:435:0,427:0:0:427:15247:-1371.25,-128.54,0	0/1:354:61,285:61:2128:285:10124:-806.359,0,-87.2702	0/1:71:54,16:54:1879:16:576:-30.7431,0,-147.954	1/1:109:0,109:0:0:109:3893:-349.671,-32.8123,0	1/1:89:0,88:0:0:88:3140:-282.377,-26.4906,0
chr06	1630804	.	T	C	351261	PASS	AB=0.50448;ABP=3.96362;AC=147;AF=0.781915;AN=188;AO=16019;CIGAR=1X;DP=18824;DPB=18824;DPRA=0;EPP=34701;EPPR=5985.73;GTI=2;LEN=1;MEANALT=1.09574;MQM=59.4832;MQMR=59.9875;NS=94;NUMALT=1;ODDS=2.88267;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=573152;QR=100008;RO=2795;RPL=10;RPP=34701;RPPR=5985.73;RPR=16009;RUN=1;SAF=16019;SAP=34787.8;SAR=0;SRF=2795;SRP=6072.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:43,19:43:1525:19:680:-42.6397,0,-118.664	1/1:211:3,208:3:108:208:7429:-658.201,-53.4422,0	0/1:159:76,83:76:2705:83:2961:-217.993,0,-195.829	1/1:253:0,253:0:0:253:9021:-811.826,-76.1606,0	0/1:120:58,62:58:2065:62:2213:-163.277,0,-149.996	0/1:38:27,11:27:972:11:396:-24.5436,0,-76.3588	1/1:178:0,178:0:0:178:6349:-571.377,-53.5833,0	0/1:226:112,114:112:4008:114:4092:-300.314,0,-292.877	0/1:152:81,71:81:2916:71:2556:-184.207,0,-216.918	0/1:171:97,74:97:3461:74:2632:-185.47,0,-260.225	0/1:90:52,38:52:1872:38:1356:-95.2454,0,-141.666	1/1:85:0,85:0:0:85:3049:-274.604,-25.5876,0	0/1:92:48,44:48:1720:44:1584:-115.097,0,-127.391	0/1:70:37,33:37:1320:33:1184:-85.7861,0,-98.0298	1/1:59:0,59:0:0:59:2124:-191.328,-17.7608,0	0/1:64:31,33:31:1116:33:1180:-87.2329,0,-81.4858	1/1:60:1,59:1:36:59:2120:-187.422,-14.4635,0	0/1:84:40,44:40:1440:44:1576:-116.837,0,-104.611	1/1:176:1,175:1:36:175:6268:-560.363,-49.383,0	1/1:280:3,277:3:108:277:9924:-882.965,-74.2132,0	0/1:195:102,93:102:3660:93:3340:-242.096,0,-270.902	1/1:112:0,112:0:0:112:3998:-359.235,-33.7154,0	0/1:97:51,46:51:1828:46:1647:-119.227,0,-135.601	0/1:185:97,88:97:3473:88:3160:-228.915,0,-257.061	1/1:111:1,109:1:36:109:3890:-346.733,-29.7949,0	1/1:425:1,423:1:36:423:15137:-1357.51,-124.398,0	0/1:334:149,184:149:5329:184:6578:-491.021,0,-379.14	1/1:34:1,33:1:36:33:1184:-103.099,-6.63719,0	0/1:451:271,180:271:9643:180:6439:-443.793,0,-732.058	0/1:194:106,88:106:3774:88:3155:-225.714,0,-281.457	1/1:131:1,130:1:36:130:4644:-414.475,-35.8367,0	1/1:618:3,613:3:108:613:21950:-1964.13,-175.719,0	1/1:346:1,345:1:36:345:12345:-1106.89,-100.558,0	1/1:897:6,890:6:216:890:31847:-2844.18,-250.164,0	1/1:970:8,962:8:288:962:34419:-3067.17,-265.732,0	1/1:1458:2,1455:2:72:1455:52092:-4677.52,-432.024,0	0/1:175:95,80:95:3416:80:2858:-204.749,0,-254.966	1/1:178:1,177:1:36:177:6344:-567.229,-49.9851,0	1/1:474:0,474:0:0:474:16959:-1523.25,-142.688,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:153:0,153:0:0:153:5479:-492.344,-46.0576,0	1/1:162:0,162:0:0:162:5816:-523.524,-48.7669,0	0/1:181:89,92:89:3188:92:3308:-243.436,0,-232.657	0/1:78:44,34:44:1580:34:1212:-85.8928,0,-119.011	0/1:61:25,36:25:896:36:1296:-98.5779,0,-62.5975	0/1:160:79,81:79:2832:81:2892:-212.342,0,-206.954	0/1:179:78,101:78:2788:101:3614:-271.501,0,-197.276	1/1:250:0,250:0:0:250:8901:-800.776,-75.2575,0	1/1:171:0,171:0:0:171:6119:-550.515,-51.4761,0	0/1:205:97,108:97:3473:108:3867:-286.502,0,-251.066	0/1:195:78,117:78:2770:117:4194:-318.864,0,-190.838	1/1:702:8,694:8:284:694:24806:-2205.12,-185.42,0	1/1:180:0,180:0:0:180:6443:-579.905,-54.1854,0	0/1:45:25,20:25:900:20:716:-51.134,0,-67.7747	0/1:34:13,21:13:453:21:743:-56.9445,0,-30.8646	0/1:141:77,64:77:2764:64:2295:-164.33,0,-206.551	1/1:64:0,64:0:0:64:2292:-206.464,-19.2659,0	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/1:21:6,15:6:212:15:539:-42.5219,0,-13.1032	1/1:60:0,60:0:0:60:2143:-193.123,-18.0618,0	1/1:78:2,76:2:72:76:2736:-239.141,-16.6436,0	0/1:30:14,16:14:500:16:576:-43.1394,0,-36.3053	1/1:81:0,81:0:0:81:2908:-261.945,-24.3834,0	1/1:254:2,251:2:72:251:8962:-799.155,-69.6837,0	1/1:125:0,125:0:0:125:4473:-402.706,-37.6288,0	1/1:150:2,148:2:72:148:5296:-469.803,-38.3178,0	1/1:220:5,215:5:180:215:7688:-675.356,-49.6745,0	1/1:121:3,118:3:104:118:4205:-368.796,-26.7218,0	1/1:187:1,186:1:36:186:6667:-596.427,-52.6943,0	1/1:116:0,116:0:0:116:4150:-373.601,-34.9195,0	1/1:81:0,81:0:0:81:2895:-260.783,-24.3834,0	1/1:427:15,412:15:536:412:14701:-1272.71,-79.965,0	1/1:76:0,76:0:0:76:2709:-244.028,-22.8783,0	0/1:90:32,58:32:1148:58:2042:-156.916,0,-76.5371	0/1:215:128,86:128:4600:86:3075:-212.284,0,-349.531	0/1:241:117,124:117:4189:124:4443:-327.448,0,-304.641	1/1:165:0,165:0:0:165:5883:-529.481,-49.67,0	1/1:153:2,151:2:72:151:5402:-479.194,-39.2209,0	1/1:612:10,602:10:360:602:21542:-1904.34,-151.486,0	1/1:167:0,167:0:0:167:5987:-538.868,-50.272,0	1/1:185:1,184:1:36:184:6583:-588.353,-52.0923,0	1/1:352:0,352:0:0:352:12588:-1132.32,-105.963,0	1/1:75:2,73:2:72:73:2624:-229.556,-15.7405,0	1/1:79:0,79:0:0:79:2836:-255.476,-23.7814,0	0/1:75:46,29:46:1648:29:1044:-71.6929,0,-126.031	1/1:129:0,129:0:0:129:4614:-415.322,-38.8329,0	0/1:45:26,19:26:936:19:680:-47.9746,0,-71.0131	1/1:76:2,74:2:72:74:2651:-231.974,-16.0416,0	0/1:58:34,24:34:1220:24:856:-59.8564,0,-92.6471	1/1:443:0,443:0:0:443:15870:-1427.54,-133.356,0	0/1:356:60,296:60:2145:296:10586:-845.262,0,-86.149	0/1:69:52,17:52:1863:17:612:-34.6424,0,-147.175	1/1:112:0,112:0:0:112:4016:-361.563,-33.7154,0	1/1:93:0,93:0:0:93:3325:-299.438,-27.9958,0
chr06	1630810	.	G	A	331950	PASS	AB=0.496748;ABP=3.50464;AC=147;AF=0.781915;AN=188;AO=15329;CIGAR=1X;DP=18129;DPB=18129;DPRA=0;EPP=31591.9;EPPR=5738.25;GTI=2;LEN=1;MEANALT=1.05319;MQM=59.4964;MQMR=59.9864;NS=94;NUMALT=1;ODDS=6.67871;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=534809;QR=99879;RO=2795;RPL=198;RPP=31591.9;RPPR=5738.25;RPR=15131;RUN=1;SAF=15329;SAP=33289.5;SAR=0;SRF=2795;SRP=6072.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:43,19:43:1529:19:676:-42.4959,0,-119.237	1/1:198:2,196:2:72:196:6721:-597.789,-52.7672,0	0/1:160:79,81:79:2804:81:2861:-208.685,0,-204.434	1/1:244:0,244:0:0:244:8579:-772.091,-73.4513,0	0/1:117:60,57:60:2143:57:1987:-143.777,0,-157.917	0/1:38:27,11:27:972:11:373:-22.4561,0,-76.3588	1/1:172:0,172:0:0:172:6024:-542.212,-51.7772,0	0/1:223:112,111:112:3992:111:3862:-280.531,0,-292.339	0/1:149:79,70:79:2840:70:2487:-178.923,0,-210.984	0/1:166:97,69:97:3461:69:2434:-169.241,0,-261.73	0/1:89:54,35:54:1936:35:1252:-86.1911,0,-147.725	1/1:81:0,81:0:0:81:2858:-257.456,-24.3834,0	0/1:92:49,43:49:1747:43:1499:-107.443,0,-129.819	0/1:68:38,30:38:1364:30:1065:-75.6895,0,-102.591	1/1:58:0,58:0:0:58:2053:-184.95,-17.4597,0	0/1:65:33,32:33:1180:32:1122:-81.7076,0,-86.9411	1/1:57:0,57:0:0:57:1931:-174.038,-17.1587,0	0/1:83:41,42:41:1457:42:1395:-100.836,0,-106.438	1/1:159:3,156:3:108:156:5347:-471.043,-37.7886,0	1/1:274:3,271:3:108:271:9627:-856.113,-72.4071,0	0/1:196:104,92:104:3693:92:3192:-228.473,0,-273.571	1/1:100:0,99:0:0:99:3520:-316.03,-29.802,0	0/1:95:50,45:50:1792:45:1529:-109.202,0,-132.965	0/1:180:93,87:93:3344:87:3004:-216.385,0,-246.962	1/1:101:1,100:1:36:100:3493:-310.938,-26.8058,0	1/1:400:1,399:1:36:399:13909:-1246.95,-116.814,0	0/1:331:148,183:148:5290:183:6368:-473.096,0,-376.591	1/1:33:1,32:1:21:32:1129:-99.5956,-7.83406,0	0/1:444:269,175:269:9612:175:6140:-419.011,0,-731.375	0/1:189:106,83:106:3793:83:2869:-201.547,0,-284.672	1/1:127:1,126:1:36:126:4468:-398.641,-34.6325,0	1/1:582:5,577:5:180:577:19598:-1746.24,-158.647,0	1/1:333:0,333:0:0:333:11574:-1041.39,-100.243,0	1/1:870:7,862:7:252:862:30316:-2703.59,-238.926,0	1/1:924:8,915:8:288:915:31742:-2828.1,-251.943,0	1/1:1409:1,1408:1:36:1408:48985:-4401,-420.553,0	0/1:174:96,78:96:3409:78:2771:-197.19,0,-254.637	1/1:170:0,170:0:0:170:5946:-535.021,-51.1751,0	1/1:442:0,441:0:0:441:15244:-1368.66,-132.754,0	0/1:15:9,6:9:324:6:201:-13.8969,0,-24.9904	1/1:152:0,152:0:0:152:5391:-484.975,-45.7566,0	1/1:152:0,152:0:0:152:5385:-484.752,-45.7566,0	0/1:175:89,86:89:3196:86:2915:-209.889,0,-235.182	0/1:79:45,34:45:1612:34:1209:-85.3196,0,-121.589	0/1:58:23,35:23:828:35:1237:-94.1693,0,-57.3844	0/1:154:77,77:77:2760:77:2673:-194.444,0,-202.283	0/1:175:77,98:77:2748:98:3456:-258.498,0,-194.88	1/1:236:1,235:1:36:235:8210:-735.268,-67.4448,0	1/1:166:0,166:0:0:166:5907:-531.713,-49.971,0	0/1:205:99,106:99:3535:106:3762:-277.056,0,-256.646	0/1:191:78,113:78:2781:113:4011:-303.606,0,-193.033	1/1:675:9,665:9:324:665:23312:-2066.98,-173.748,0	1/1:172:1,171:1:36:171:5977:-534.406,-48.1789,0	0/1:46:26,20:26:936:20:697:-49.1159,0,-70.7121	0/1:33:13,20:13:464:20:682:-51.7551,0,-32.1635	0/1:140:77,63:77:2729:63:2211:-157.075,0,-203.706	1/1:58:0,58:0:0:58:2050:-184.749,-17.4597,0	0/1:16:5,11:5:180:11:377:-29.4415,0,-11.7356	0/1:20:6,14:6:216:14:481:-37.5945,0,-13.7699	1/1:58:0,58:0:0:58:2027:-182.684,-17.4597,0	1/1:77:2,75:2:72:75:2669:-233.115,-16.3426,0	0/1:29:14,15:14:504:15:536:-39.8402,0,-36.9682	1/1:73:0,73:0:0:73:2541:-228.933,-21.9752,0	1/1:250:2,248:2:72:248:8691:-774.422,-68.4208,0	1/1:122:0,122:0:0:122:4198:-377.975,-36.7257,0	1/1:147:2,145:2:72:145:5113:-453.329,-37.4147,0	1/1:204:4,200:4:144:200:6926:-610.061,-48.0965,0	1/1:117:3,114:3:108:114:3895:-340.609,-25.1453,0	1/1:174:0,174:0:0:174:6068:-546.175,-52.3792,0	1/1:112:0,112:0:0:112:3997:-359.65,-33.7154,0	1/1:78:0,78:0:0:78:2767:-249.268,-23.4803,0	1/1:415:15,400:15:540:400:13893:-1200.22,-75.9909,0	1/1:75:0,75:0:0:75:2621:-235.976,-22.5773,0	0/1:86:33,53:33:1184:53:1806:-136.893,0,-80.9797	0/1:215:128,87:128:4569:87:3048:-209.687,0,-346.654	0/1:238:115,123:115:4120:123:4287:-314.353,0,-299.339	1/1:157:0,157:0:0:157:5314:-478.3,-47.2617,0	1/1:141:2,139:2:68:139:4908:-435.332,-35.9875,0	1/1:572:9,563:9:324:563:19148:-1692.59,-142.683,0	1/1:160:0,160:0:0:160:5616:-505.508,-48.1648,0	1/1:173:1,172:1:36:172:5930:-530.097,-48.4799,0	1/1:338:1,337:1:36:337:11928:-1069.63,-98.1499,0	1/1:69:1,68:1:36:68:2421:-214.535,-17.1728,0	1/1:76:0,76:0:0:76:2708:-243.964,-22.8783,0	0/1:74:46,28:46:1656:28:993:-67.4016,0,-127.052	1/1:121:0,121:0:0:121:4204:-378.523,-36.4246,0	0/1:42:26,16:26:936:16:557:-37.8123,0,-71.9162	1/1:70:0,70:0:0:70:2391:-215.423,-21.0721,0	0/1:55:34,21:34:1216:21:737:-50.094,0,-93.1899	1/1:428:0,428:0:0:428:15183:-1365.75,-128.841,0	0/1:349:60,289:60:2147:289:10213:-813.824,0,-88.434	0/1:65:50,15:50:1767:15:525:-28.0111,0,-139.743	1/1:105:0,105:0:0:105:3685:-331.195,-31.6082,0	1/1:91:1,90:1:36:90:3171:-281.996,-23.7955,0
chr06	1630813	.	C	T	43662.8	PASS	AB=0.490429;ABP=7.2915;AC=41;AF=0.218085;AN=188;AO=2711;CIGAR=1X;DP=18611;DPB=18611;DPRA=1.28894;EPP=5777.5;EPPR=33971.2;GTI=3;LEN=1;MEANALT=1.11475;MQM=59.9845;MQMR=59.4935;NS=94;NUMALT=1;ODDS=1.20932;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96742;QR=566861;RO=15882;RPL=2698;RPP=5777.5;RPPR=33971.2;RPR=13;RUN=1;SAF=2711;SAP=5889.87;SAR=0;SRF=15882;SRP=34490.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:18,43:18:635:43:1535:-120.08,0,-39.1059	0/0:208:206,2:206:7356:2:72:0,-55.7775,-654.726	0/1:160:84,76:84:3004:76:2715:-196.428,0,-221.4	0/0:255:255,0:255:9113:0:0:0,-76.7626,-820.096	0/1:122:61,61:61:2184:61:2172:-159.021,0,-159.996	0/1:37:10,27:10:360:27:968:-76.2993,0,-21.6062	0/0:173:173,0:173:6163:0:0:0,-52.0782,-554.694	0/1:220:112,108:112:3995:108:3818:-277.594,0,-293.413	0/1:153:71,82:71:2536:82:2908:-215.897,0,-182.108	0/1:162:73,89:73:2612:89:3169:-236.667,0,-186.374	0/1:88:37,51:37:1320:51:1813:-136.959,0,-92.609	0/0:84:84,0:84:2994:0:0:0,-25.2865,-269.661	0/1:89:44,45:44:1568:45:1597:-117.227,0,-114.565	0/1:72:33,39:33:1180:39:1382:-103.003,0,-84.8237	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.095	0/1:66:32,34:32:1143:34:1207:-89.0673,0,-83.3015	0/0:59:59,0:59:2109:0:0:0,-17.7608,-190.029	0/1:80:43,37:43:1544:37:1315:-94.5686,0,-115.163	0/0:176:175,1:175:6252:1:36:0,-49.383,-558.914	0/0:281:277,3:277:9906:3:108:0,-74.5654,-881.213	0/1:191:90,101:90:3228:101:3598:-266.53,0,-233.229	0/0:111:111,0:111:3951:0:0:0,-33.4143,-355.381	0/1:95:45,50:45:1587:50:1796:-133.324,0,-114.48	0/1:184:88,96:88:3138:96:3435:-253.945,0,-227.241	0/0:104:100,1:100:3535:1:36:0,-27.1646,-314.751	0/0:422:421,0:421:15027:0:0:0,-126.734,-1350.57	0/1:329:184,145:184:6581:145:5181:-367.39,0,-492.827	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.648	0/1:447:181,266:181:6455:266:9498:-720.217,0,-446.393	0/1:194:85,109:85:3048:109:3881:-291.085,0,-216.089	0/0:127:126,1:126:4513:1:36:0,-34.6325,-402.677	0/0:614:611,3:611:21795:3:108:0,-174.757,-1950.18	0/0:342:341,0:341:12215:0:0:0,-102.651,-1098.59	0/0:894:888,6:888:31728:6:216:0,-249.33,-2833.43	0/0:948:939,6:939:33444:6:216:0,-264.956,-2985.92	0/0:1440:1436,1:1436:51231:1:36:0,-429.331,-4602.31	0/1:169:80,89:80:2833:89:3179:-235.46,0,-204.272	0/0:176:176,0:176:6296:0:0:0,-52.9813,-566.501	0/0:471:471,0:471:16754:0:0:0,-141.785,-1505.15	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.7473	0/0:152:152,0:152:5436:0:0:0,-45.7566,-488.499	0/0:162:162,0:162:5778:0:0:0,-48.7669,-520.106	0/1:177:91,86:91:3247:86:3056:-221.986,0,-239.159	0/1:78:34,44:34:1224:44:1580:-119.011,0,-86.9736	0/1:60:36,24:36:1280:24:864:-60.0208,0,-97.4405	0/1:151:80,71:80:2855:71:2548:-184.115,0,-211.722	0/1:176:102,74:102:3640:74:2664:-187.024,0,-274.743	0/0:248:248,0:248:8859:0:0:0,-74.6554,-797.05	0/0:171:171,0:171:6136:0:0:0,-51.4761,-552.127	0/1:200:106,94:106:3785:94:3346:-241.151,0,-280.63	0/1:191:116,75:116:4145:75:2678:-183.767,0,-315.668	0/0:698:690,8:690:24654:8:284:0,-184.216,-2190.58	0/0:182:182,0:182:6518:0:0:0,-54.7875,-586.629	0/1:45:20,25:20:716:25:883:-66.2411,0,-51.0307	0/1:32:21,11:21:739:11:392:-25.9871,0,-57.1856	0/1:137:62,75:62:2228:75:2669:-199.209,0,-159.508	0/0:64:63,1:63:2256:1:29:0,-16.3829,-200.412	0/1:15:10,5:10:352:5:176:-11.6696,0,-27.5027	0/1:21:15,6:15:536:6:216:-13.4689,0,-42.2498	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.404	0/0:79:77,2:77:2736:2:72:0,-16.9446,-239.146	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.1413	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.887	0/0:253:251,2:251:8951:2:68:0,-69.7029,-799.095	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.696	0/0:149:147,2:147:5253:2:72:0,-38.0167,-465.852	0/0:216:211,5:211:7493:5:180:0,-48.4704,-657.822	0/0:121:118,3:118:4205:3:108:0,-26.3495,-368.412	0/0:187:186,0:186:6653:0:0:0,-55.9916,-598.535	0/0:116:116,0:116:4133:0:0:0,-34.9195,-372.073	0/0:80:79,0:79:2828:0:0:0,-23.7814,-254.396	0/0:420:404,14:404:14414:14:496:0,-81.1367,-1251.35	0/0:79:79,0:79:2820:0:0:0,-23.7814,-253.88	0/1:87:56,31:56:1996:31:1116:-74.5621,0,-153.696	0/1:215:88,127:88:3144:127:4540:-344.046,0,-218.326	0/1:236:123,113:123:4416:113:4054:-294.004,0,-326.524	0/0:161:161,0:161:5731:0:0:0,-48.4658,-515.788	0/0:152:151,1:151:5395:1:36:0,-42.1583,-481.815	0/0:599:590,9:590:21067:9:315:0,-151.63,-1865.5	0/0:167:167,0:167:5946:0:0:0,-50.272,-535.185	0/0:185:183,1:183:6505:1:36:0,-52.1506,-581.426	0/0:348:348,0:348:12431:0:0:0,-104.758,-1117.86	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.923	0/0:79:79,0:79:2835:0:0:0,-23.7814,-255.385	0/1:74:30,44:30:1065:44:1576:-119.855,0,-73.8789	0/0:128:128,0:128:4527:0:0:0,-38.5318,-407.497	0/1:44:18,26:18:625:26:932:-70.9535,0,-43.3269	0/0:73:73,0:73:2582:0:0:0,-21.9752,-232.602	0/1:58:26,32:26:928:32:1141:-85.5384,0,-66.36	0/0:443:442,0:442:15828:0:0:0,-133.055,-1423.4	0/1:355:297,58:297:10613:58:2076:-80.2449,0,-847.988	0/1:67:17,50:17:600:50:1792:-141.391,0,-34.1602	0/0:112:112,0:112:3982:0:0:0,-33.7154,-357.88	0/0:93:93,0:93:3301:0:0:0,-27.9958,-297.249
chr06	1630862	.	TATAG	AATAA,TATAA	143834	PASS	AB=0.446077,0.549583;ABP=78.6522,66.9647;AC=140,48;AF=0.744681,0.255319;AN=188;AO=5027,1666;CIGAR=1X3M1X,4M1X;DP=6717;DPB=6717.6;DPRA=24.5714,1.14174;EPP=10875.6,3594.67;EPPR=7.35324;GTI=1;LEN=5,1;MEANALT=1.74725,2.15385;MQM=59.9582,59.9982;MQMR=60;NS=94;NUMALT=2;ODDS=0.966153;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=72,0;PQR=0;PRO=0;QA=177754,59648;QR=72;RO=2;RPL=5024,1663;RPP=10893,3594.67;RPPR=7.35324;RPR=3,3;RUN=1,1;SAF=2,0;SAP=10901.6,3620.68;SAR=5025,1666;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,8,38:0:0:8,38:286,1368:-135.301,-111.982,-109.573,-23.6773,0,-12.2382	1/1:80:0,79,1:0:0:79,1:2784,36:-250.44,-23.7814,0,-247.502,-20.4841,-247.201	1/2:22:0,14,8:0:0:14,8:480,288:-62.8162,-23.8592,-19.6447,-39.3106,0,-36.9024	1/1:293:0,291,0:0:0:291,0:10258,0:-922.879,-87.5997,0,-922.879,-87.5997,-922.879	1/2:70:0,40,30:0:0:40,30:1428,1068:-203.822,-87.4012,-75.36,-116.777,0,-107.746	1/2:77:0,40,37:0:0:40,37:1408,1320:-222.583,-107.964,-95.9226,-114.974,0,-103.836	1/1:118:0,118,0:0:0:118,0:4178,0:-376.205,-35.5215,0,-376.205,-35.5215,-376.205	1/2:121:0,57,64:0:0:57,64:1989,2300:-349.766,-187.995,-170.836,-162.124,0,-142.858	1/2:112:0,61,51:0:0:61,51:2137,1825:-323.054,-149.177,-130.815,-174.231,0,-158.879	1/2:109:0,40,68:0:0:40,68:1432,2429:-314.933,-198.153,-186.112,-116.895,0,-96.425	1/2:44:0,5,39:0:0:5,39:162,1396:-127.265,-114.199,-112.694,-13.3943,0,-1.65411	1/1:40:0,39,0:0:0:39,0:1351,0:-121.643,-11.7402,0,-121.643,-11.7402,-121.643	1/2:57:0,19,37:0:0:19,37:676,1319:-162.724,-107.631,-101.911,-55.2034,0,-44.0653	1/2:49:0,26,23:0:0:26,23:923,828:-143.123,-67.9204,-60.0936,-75.5606,0,-68.6369	1/1:37:0,37,0:0:0:37,0:1320,0:-119.102,-11.1381,0,-119.102,-11.1381,-119.102	1/2:43:0,14,29:0:0:14,29:504,1044:-126.669,-85.5449,-81.3305,-41.4837,0,-32.7538	1/1:31:0,31,0:0:0:31,0:1086,0:-98.0482,-9.33193,0,-98.0482,-9.33193,-98.0482	1/2:45:0,19,24:0:0:19,24:673,864:-125.412,-70.5882,-64.8686,-54.9061,0,-47.6813	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:374:0,371,2:0:0:371,2:13159,72:-1183.78,-111.682,0,-1177.91,-105.787,-1177.3	1/2:99:0,48,51:0:0:48,51:1699,1821:-287.209,-148.818,-134.368,-138.747,0,-123.394	1/1:51:0,51,0:0:0:51,0:1812,0:-163.362,-15.3525,0,-163.362,-15.3525,-163.362	1/2:72:0,42,30:0:0:42,30:1509,1080:-211.584,-88.4823,-75.8391,-123.462,0,-114.431	1/2:116:0,58,58:0:0:58,58:2049,2067:-335.708,-168.841,-151.381,-167.222,0,-149.762	1/1:72:0,72,0:0:0:72,0:2564,0:-231.011,-21.6742,0,-231.011,-21.6742,-231.011	1/1:319:0,317,0:0:0:317,0:11225,0:-1009.81,-95.4265,0,-1009.81,-95.4265,-1009.81	1/2:159:0,71,88:0:0:71,88:2502,3141:-459.771,-256.064,-234.691,-203.702,0,-177.211	1/1:21:0,21,0:0:0:21,0:745,0:-67.3746,-6.32163,0,-67.3746,-6.32163,-67.3746	1/2:178:0,106,71:0:0:106,71:3764,2548:-514.65,-207.955,-176.046,-306.81,0,-285.437	1/2:77:0,46,31:0:0:46,31:1620,1116:-223.304,-91.4198,-77.5724,-132.241,0,-122.909	1/1:100:0,98,2:0:0:98,2:3415,72:-307.208,-29.5009,0,-301.333,-23.2663,-300.731	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:8:0,8,0:0:0:8,0:285,0:-25.9946,-2.40824,0,-25.9946,-2.40824,-25.9946	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:141:0,24,114:0:0:24,114:851,4088:-402.776,-333.446,-326.222,-69.3434,0,-35.026	1/1:144:0,144,0:0:0:144,0:5093,0:-457.861,-43.3483,0,-457.861,-43.3483,-457.861	1/1:21:0,21,0:0:0:21,0:747,0:-67.5552,-6.32163,0,-67.5552,-6.32163,-67.5552	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:150:0,149,1:0:0:149,1:5254,36:-472.647,-44.8535,0,-469.709,-41.5562,-469.408	1/1:22:0,22,0:0:0:22,0:783,0:-70.7939,-6.62266,0,-70.7939,-6.62266,-70.7939	1/2:67:0,34,32:0:0:34,32:1207,1144:-191.73,-93.3837,-83.1487,-98.4484,0,-88.8154	1/2:66:0,17,49:0:0:17,49:607,1764:-193.78,-144.293,-139.176,-49.8441,0,-35.0936	1/2:46:0,17,29:0:0:17,29:605,1044:-134.851,-85.5449,-80.4274,-49.6635,0,-40.9336	1/2:63:0,36,27:0:0:36,27:1285,964:-183.709,-78.949,-68.1119,-105.117,0,-96.9891	1/2:80:0,52,28:0:0:52,28:1835,1008:-232.027,-82.6075,-66.954,-149.776,0,-141.348	1/1:79:0,79,0:0:0:79,0:2791,0:-251.424,-23.7814,0,-251.424,-23.7814,-251.424	1/1:53:0,53,0:0:0:53,0:1880,0:-169.478,-15.9546,0,-169.478,-15.9546,-169.478	1/2:122:0,45,76:0:0:45,76:1592,2723:-351.851,-222.183,-208.636,-129.771,0,-106.893	1/2:123:0,51,72:0:0:51,72:1813,2561:-356.809,-209.065,-193.712,-148.099,0,-126.425	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	1/1:35:0,34,0:0:0:34,0:1200,0:-107.975,-10.235,0,-107.975,-10.235,-107.975	1/2:54:0,29,25:0:0:29,25:1025,892:-156.551,-73.0739,-64.3441,-83.8326,0,-76.3069	1/2:6:0,3,3:0:0:3,3:104,99:-16.7952,-8.33349,-7.4304,-8.79988,0,-7.89679	1/2:100:2,59,39:2:72:59,39:2095,1396:-278.065,-107.964,-96.0784,-164.825,0,-158.96	1/1:53:0,53,0:0:0:53,0:1884,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chr06	1676960	.	C	T	44282.2	PASS	AB=0.326098;ABP=2665.26;AC=89;AF=0.478495;AN=186;AO=3305;CIGAR=1X;DP=10150;DPB=10150;DPRA=30.367;EPP=7171.04;EPPR=14858.1;GTI=15;LEN=1;MEANALT=1.03371;MQM=59.9673;MQMR=59.9934;NS=93;NUMALT=1;ODDS=0.21663;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118203;QR=243580;RO=6841;RPL=1;RPP=7171.04;RPPR=14858.1;RPR=3304;RUN=1;SAF=0;SAP=7179.73;SAR=3305;SRF=0;SRP=14858.1;SRR=6841;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:48,24:48:1698:24:860:-56.0477,0,-131.428	0/1:148:83,65:83:2953:65:2332:-165.587,0,-221.45	0/1:139:105,34:105:3721:34:1217:-67.9931,0,-293.247	0/1:190:116,74:116:4111:74:2641:-180.74,0,-312.978	0/1:69:54,15:54:1940:15:525:-26.807,0,-154.105	0/1:49:40,9:40:1407:9:324:-14.7554,0,-112.173	0/1:131:83,48:83:2980:48:1716:-115.291,0,-228.997	0/1:167:133,34:133:4761:34:1216:-59.4746,0,-378.374	0/1:97:78,19:78:2787:19:676:-31.9681,0,-221.87	0/1:148:122,26:122:4341:26:936:-40.007,0,-346.311	0/1:59:50,9:50:1761:9:324:-11.7451,0,-141.011	0/1:60:33,27:33:1157:27:972:-69.7361,0,-86.3727	0/1:93:80,13:80:2868:13:468:-14.4639,0,-230.361	0/1:123:98,25:98:3475:25:900:-44.2943,0,-275.937	0/1:78:49,29:49:1740:29:1044:-70.7945,0,-133.404	0/1:73:60,13:60:2131:13:468:-20.4845,0,-170.083	0/1:76:40,36:40:1420:36:1288:-93.3453,0,-105.219	0/1:96:75,21:75:2684:21:752:-39.1074,0,-212.906	0/1:28:11,17:11:379:17:612:-46.9846,0,-26.0117	0/1:181:93,88:93:3305:88:3156:-229.778,0,-243.18	0/1:136:110,26:110:3929:26:936:-43.6194,0,-312.861	0/1:125:75,49:75:2656:49:1760:-120.996,0,-201.598	0/1:97:78,19:78:2769:19:684:-32.6904,0,-220.248	0/1:155:124,31:124:4445:31:1112:-53.7317,0,-353.559	0/1:50:33,17:33:1176:17:604:-39.6391,0,-91.0963	0/1:312:192,120:192:6837:120:4282:-291.633,0,-521.477	0/1:212:176,36:176:6249:36:1291:-52.6753,0,-498.687	0/1:44:24,20:24:852:20:716:-51.5224,0,-63.7551	0/1:287:240,47:240:8581:47:1668:-64.0118,0,-685.891	0/1:233:185,48:185:6610:48:1724:-85.3054,0,-524.838	0/1:123:72,51:72:2580:51:1817:-126.783,0,-195.422	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:255:206,49:206:7327:49:1757:-81.6509,0,-582.717	0/1:186:97,89:97:3448:89:3186:-230.971,0,-254.541	0/1:66:33,33:33:1180:33:1175:-86.189,0,-86.6401	.:.:.:.:.:.:.:.	0/1:140:77,63:77:2711:63:2249:-160.528,0,-202.086	0/1:33:14,19:14:495:19:684:-51.953,0,-34.949	0/1:161:138,23:138:4924:23:813:-25.0233,0,-394.844	0/1:102:83,18:83:2934:18:648:-27.888,0,-233.529	0/1:95:80,15:80:2833:15:540:-20.3387,0,-226.611	0/1:104:92,12:92:3266:12:432:-7.91408,0,-262.852	0/1:152:124,28:124:4431:28:1000:-44.5588,0,-353.205	0/1:138:88,50:88:3156:50:1784:-119.301,0,-242.564	0/1:156:77,79:77:2741:79:2829:-207.886,0,-199.971	0/1:189:157,32:157:5601:32:1132:-45.2917,0,-447.318	0/1:178:160,18:160:5702:18:629:-3.35044,0,-459.714	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:112:62,50:62:2215:50:1747:-123.755,0,-165.899	0/1:50:26,24:26:936:24:852:-61.9489,0,-69.508	0/1:22:18,4:18:635:4:144:-6.69096,0,-50.8543	0/1:176:137,39:137:4857:39:1389:-72.3257,0,-384.3	0/1:42:24,18:24:849:18:648:-46.0086,0,-64.0846	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:18:13,5:13:468:5:176:-10.7665,0,-37.0411	0/1:109:54,55:54:1912:55:1972:-144.943,0,-139.543	0/1:155:79,76:79:2790:76:2732:-199.463,0,-204.679	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:291:149,142:149:5329:142:5081:-369.833,0,-392.143	0/1:196:123,73:123:4381:73:2612:-176.326,0,-335.459	0/1:111:61,50:61:2162:50:1796:-128.508,0,-161.429	0/1:84:42,42:42:1465:42:1497:-109.737,0,-106.856	0/1:130:84,46:84:3003:46:1637:-108.483,0,-231.367	0/1:129:82,47:82:2925:47:1692:-113.734,0,-224.651	0/1:29:5,24:5:180:24:842:-67.3677,0,-7.82219	0/1:92:57,35:57:2036:35:1256:-85.6505,0,-155.818	0/1:119:58,61:58:2065:61:2180:-160.644,0,-150.297	0/1:42:27,15:27:968:15:540:-36.2933,0,-74.7941	0/1:89:41,48:41:1468:48:1712:-127.485,0,-105.624	0/1:94:77,15:77:2722:15:540:-20.8996,0,-217.186	0/1:163:132,31:132:4697:31:1116:-51.6838,0,-373.779	0/1:225:180,45:180:6430:45:1616:-77.9983,0,-511.054	0/1:95:50,45:50:1781:45:1612:-116.772,0,-131.973	0/1:128:66,62:66:2340:62:2228:-162.252,0,-172.326	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:127:79,48:79:2828:48:1724:-117.215,0,-216.528	0/1:110:52,58:52:1857:58:2072:-153.637,0,-134.294	0/1:183:99,84:99:3517:84:3020:-216.94,0,-261.652	0/1:153:84,69:84:2989:69:2454:-175.055,0,-223.184	0/1:81:43,38:43:1544:38:1338:-96.3295,0,-114.87	0/1:109:74,35:74:2621:35:1256:-80.533,0,-203.325	0/1:133:68,65:68:2427:65:2332:-170.103,0,-178.648	0/1:56:49,7:49:1748:7:237:-4.80138,0,-140.747	0/1:97:47,50:47:1684:50:1796:-132.722,0,-122.647	0/1:73:54,19:54:1920:19:684:-39.9151,0,-151.102	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/1:120:100,20:100:3546:20:716:-28.6441,0,-283.227	0/1:93:77,16:77:2737:16:566:-23.2741,0,-218.576	0/1:141:90,51:90:3200:51:1824:-121.959,0,-245.777	0/1:83:40,43:40:1428:43:1540:-113.908,0,-103.832
chr06	1714440	.	T	A	98496.1	PASS	AB=0.521609;ABP=36.7946;AC=47;AF=0.25;AN=188;AO=4381;CIGAR=1X;DP=18815;DPB=18815;DPRA=1.18001;EPP=9507.55;EPPR=31322.2;GTI=2;LEN=1;MEANALT=1.02857;MQM=52.8012;MQMR=51.8831;NS=94;NUMALT=1;ODDS=1.01163;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156633;QR=515445;RO=14427;RPL=2725;RPP=569.428;RPPR=1157.06;RPR=1656;RUN=1;SAF=2726;SAP=571.549;SAR=1655;SRF=8597;SRP=1155.39;SRR=5830;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:118:48,67:48:1690:67:2400:-179.17,0,-113.701	0/0:358:354,4:354:12655:4:144:0,-94.5266,-1117.97	0/1:262:128,134:128:4566:134:4785:-348.203,0,-326.22	0/0:482:482,0:482:17223:0:0:0,-145.096,-1520.51	0/1:203:107,96:107:3824:96:3429:-246.432,0,-281.668	0/1:90:42,48:42:1512:48:1728:-126.841,0,-106.948	0/0:233:232,1:232:8304:1:36:0,-66.5422,-724.41	0/1:411:194,217:194:6945:217:7733:-565.199,0,-494.446	0/1:226:113,113:113:4006:113:4052:-291.339,0,-286.837	0/1:244:116,128:116:4122:128:4596:-335.851,0,-291.948	0/1:106:38,68:38:1355:68:2410:-182.175,0,-88.2187	0/0:179:179,0:179:6400:0:0:0,-53.8844,-561.085	0/1:172:87,85:87:3120:85:3043:-218.714,0,-223.53	0/1:102:48,54:48:1720:54:1936:-142.669,0,-120.709	0/0:151:151,0:151:5436:0:0:0,-45.4555,-478.809	0/1:130:67,63:67:2404:63:2264:-161.947,0,-171.924	0/0:110:110,0:110:3933:0:0:0,-33.1133,-350.601	0/1:106:51,55:51:1832:55:1972:-144.624,0,-130.987	0/0:75:74,1:74:2660:1:36:0,-19.3896,-229.975	0/0:500:498,2:498:17827:2:72:0,-143.679,-1579.84	0/1:342:141,201:141:5008:201:7173:-536.969,0,-341.95	0/0:161:161,0:161:5784:0:0:0,-48.4658,-513.953	0/1:248:139,109:139:4936:109:3904:-271.273,0,-359.977	0/1:170:74,96:74:2648:96:3432:-256.7,0,-185.334	0/0:160:159,1:159:5680:1:36:0,-44.6438,-498.418	0/0:619:617,2:617:22014:2:72:0,-179.619,-1954.27	0/1:573:296,277:296:10536:277:9907:-710.741,0,-758.363	0/0:67:66,0:66:2334:0:0:0,-19.868,-205.16	0/1:537:247,290:247:8798:290:10381:-766.901,0,-619.755	0/1:201:90,111:90:3232:111:3988:-295.253,0,-224.638	0/0:240:239,1:239:8536:1:36:0,-68.6494,-750.223	0/1:13:7,6:7:252:6:216:-15.7355,0,-18.5897	0/0:31:31,0:31:1103:0:0:0,-9.33193,-96.3527	0/1:12:10,2:10:360:2:72:-3.15096,0,-29.0167	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.1498	0/0:27:27,0:27:963:0:0:0,-8.12781,-85.3011	0/1:383:195,188:195:6995:188:6760:-485.984,0,-504.526	0/0:256:256,0:256:9146:0:0:0,-77.0637,-808.171	0/0:101:101,0:101:3620:0:0:0,-30.404,-321.594	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.79704	0/0:304:301,3:301:10713:3:108:0,-81.4379,-940.927	0/0:56:55,0:55:1980:0:0:0,-16.5566,-173.935	0/1:290:150,140:150:5376:140:4986:-359.297,0,-390.732	0/1:153:73,80:73:2611:80:2829:-205.287,0,-185.691	0/1:135:70,65:70:2504:65:2318:-164.749,0,-180.209	0/1:231:105,126:105:3760:126:4504:-329.952,0,-264.663	0/1:254:143,111:143:5073:111:3954:-276.666,0,-375.052	0/0:337:335,2:335:12000:2:68:0,-94.99,-1048.67	0/0:233:232,1:232:8294:1:36:0,-66.6373,-731.805	0/1:298:148,150:148:5294:150:5365:-389.316,0,-381.323	0/1:252:113,139:113:4056:139:4965:-368.703,0,-287.777	0/1:20:13,7:13:468:7:252:-16.9193,0,-35.9146	0/0:267:266,1:266:9484:1:36:0,-76.7767,-834.398	0/1:93:43,50:43:1548:50:1776:-130.623,0,-107.207	0/1:33:20,13:20:712:13:468:-32.3854,0,-54.2983	0/1:240:114,126:114:4092:126:4524:-331.455,0,-288.57	0/0:119:118,1:118:4209:1:36:0,-32.3199,-367.374	0/1:15:5,10:5:180:10:352:-27.3927,0,-11.5364	0/1:31:12,19:12:432:19:684:-51.9739,0,-29.2956	0/0:232:231,1:231:8261:1:32:0,-66.6396,-717.819	0/0:175:173,1:173:6170:1:36:0,-49.2315,-541.358	0/1:25:9,16:9:324:16:572:-43.6369,0,-21.1941	0/0:397:397,0:397:14196:0:0:0,-119.509,-1263.84	0/0:425:422,3:422:15050:3:108:0,-118.46,-1319.99	0/0:133:133,0:133:4784:0:0:0,-40.037,-422.158	0/0:169:169,0:169:5960:0:0:0,-50.8741,-528.606	0/0:343:342,1:342:12206:1:36:0,-99.6555,-1072.16	0/0:277:276,1:276:9852:1:36:0,-79.8826,-859.211	0/0:53:53,0:53:1893:0:0:0,-15.9546,-165.883	0/0:167:167,0:167:5969:0:0:0,-50.272,-529.954	0/0:121:120,1:120:4278:1:36:0,-32.8274,-377.364	0/1:54:19,35:19:669:35:1245:-94.8223,0,-43.6227	0/0:222:222,0:222:7944:0:0:0,-66.8287,-697.924	0/1:179:98,81:98:3482:81:2887:-201.606,0,-255.069	0/1:292:138,154:138:4944:154:5480:-401.935,0,-349.89	0/1:411:191,220:191:6798:220:7868:-577.814,0,-481.755	0/0:223:223,0:223:7955:0:0:0,-67.1297,-704.117	0/0:243:242,0:242:8619:0:0:0,-72.8493,-766.547	0/1:22:12,10:12:409:10:356:-25.5476,0,-29.872	0/0:255:253,2:253:9059:2:72:0,-69.9993,-795.079	0/0:215:215,0:215:7663:0:0:0,-64.7214,-678.856	0/0:480:480,0:480:17172:0:0:0,-144.494,-1518.37	0/0:129:129,0:129:4615:0:0:0,-38.8329,-407.232	0/0:156:155,1:155:5552:1:36:0,-43.458,-481.692	0/1:145:59,86:59:2116:86:3071:-229.814,0,-143.772	0/0:283:282,1:282:10127:1:36:0,-81.6705,-888.015	0/1:70:30,40:30:1080:40:1428:-105.757,0,-75.0824	0/0:121:121,0:121:4320:0:0:0,-36.4246,-382.038	0/1:123:53,70:53:1904:70:2501:-186.491,0,-130.404	0/0:63:63,0:63:2268:0:0:0,-18.9649,-198.984	0/1:121:62,59:62:2219:59:2115:-151.477,0,-157.657	0/1:181:54,127:54:1928:127:4560:-350.946,0,-115.045	0/0:291:288,3:288:10268:3:108:0,-77.5258,-898.025	0/0:246:245,1:245:8766:1:36:0,-70.5507,-763.48
chr06	1714452	.	CAA	TAT,CAT	151810	PASS	AB=0.487413,0.510069;ABP=7.38331,5.80903;AC=143,45;AF=0.760638,0.239362;AN=188;AO=5877,1638;CIGAR=1X1M1X,2M1X;DP=7532;DPB=7532;DPRA=0,0.944962;EPP=12626.2,3482.14;EPPR=5.18177;GTI=2;LEN=3,1;MEANALT=1.7766,2.13793;MQM=40.4744,43.2155;MQMR=58;NS=94;NUMALT=2;ODDS=1.32405;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=205328,58087;QR=36;RO=1;RPL=5861,1630;RPP=12626.2,3490.73;RPPR=5.18177;RPR=16,8;RUN=1,1;SAF=0,1;SAP=12764.8,3551.2;SAR=5877,1637;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,17,29:0:0:17,29:594,1040:-127.895,-83.2704,-78.1529,-44.9598,0,-36.2299	1/1:74:0,73,1:0:0:73,1:2560,36:-223.63,-21.9752,0,-220.762,-18.7552,-220.461	1/2:106:0,59,47:0:0:59,47:2052,1665:-294.683,-133.105,-115.344,-161.921,0,-147.772	1/1:198:0,198,0:0:0:198,0:6873,0:-592.219,-59.6039,0,-592.219,-59.6039,-592.219	1/2:28:0,13,15:0:0:13,15:447,520:-76.6533,-41.7575,-37.8441,-35.2315,0,-30.716	1/2:47:0,22,25:0:0:22,25:780,892:-132.652,-71.279,-64.6563,-61.7194,0,-54.1937	1/1:134:0,134,0:0:0:134,0:4650,0:-402.034,-40.338,0,-402.034,-40.338,-402.034	1/2:144:0,67,77:0:0:67,77:2359,2732:-401.358,-215.642,-195.473,-186.059,0,-162.88	1/2:127:0,62,63:0:0:62,63:2142,2207:-343.989,-175.181,-156.517,-168.905,0,-149.94	1/2:76:0,39,37:0:0:39,37:1386,1305:-211.072,-102.855,-91.115,-108.558,0,-97.4202	1/2:52:0,15,37:0:0:15,37:527,1320:-146.285,-105.187,-100.672,-41.4382,0,-30.3001	1/1:114:0,114,0:0:0:114,0:3977,0:-344.568,-34.3174,0,-344.568,-34.3174,-344.568	1/2:87:1,41,45:1:36:41,45:1447,1593:-235.035,-122.541,-113.136,-109.84,0,-99.2308	1/2:36:0,21,15:0:0:21,15:725,540:-98.8708,-43.3703,-37.0486,-55.8423,0,-51.3268	1/1:79:0,79,0:0:0:79,0:2807,0:-242.892,-23.7814,0,-242.892,-23.7814,-242.892	1/2:69:0,34,35:0:0:34,35:1198,1252:-192.514,-99.5998,-89.3648,-93.2568,0,-82.7208	1/1:31:0,31,0:0:0:31,0:1092,0:-95.7332,-9.33193,0,-95.7332,-9.33193,-95.7332	1/2:38:0,20,18:0:0:20,18:704,644:-107.152,-51.7505,-45.7299,-55.7481,0,-50.3296	1/1:41:0,40,1:0:0:40,1:1407,36:-120.762,-12.0412,0,-118.195,-9.15461,-117.894	1/1:127:0,127,0:0:0:127,0:4426,0:-383.41,-38.2308,0,-383.41,-38.2308,-383.41	1/2:119:0,43,76:0:0:43,76:1496,2686:-330.359,-213.916,-200.972,-116.782,0,-93.9032	1/1:75:0,75,0:0:0:75,0:2623,0:-230.664,-22.5773,0,-230.664,-22.5773,-230.664	1/2:124:0,69,54:0:0:69,54:2413,1907:-338.227,-150.826,-130.054,-187.529,0,-171.274	1/2:23:0,12,11:0:0:12,11:414,381:-62.4359,-30.6045,-26.9921,-32.1654,0,-28.8541	1/1:77:0,76,1:0:0:76,1:2608,36:-226.854,-22.8783,0,-223.986,-19.6583,-223.685	1/1:200:0,197,2:0:0:197,2:6892,72:-602.715,-59.3029,0,-596.952,-53.544,-596.35	1/2:263:0,134,128:0:0:134,128:4629,4522:-721.348,-359.986,-319.648,-361.431,0,-322.899	1/1:27:0,27,0:0:0:27,0:954,0:-82.234,-8.12781,0,-82.234,-8.12781,-82.234	1/2:193:0,106,86:0:0:106,86:3675,3053:-534.053,-243.868,-211.959,-290.294,0,-264.406	1/2:82:0,38,43:0:0:38,43:1328,1516:-223.027,-120.732,-109.292,-102.326,0,-89.3812	1/1:103:0,103,0:0:0:103,0:3584,0:-310.155,-31.0061,0,-310.155,-31.0061,-310.155	1/2:7:0,5,2:0:0:5,2:180,72:-20.1232,-6.08786,-4.58271,-14.3855,0,-13.7834	1/1:20:0,20,0:0:0:20,0:710,0:-61.1839,-6.0206,0,-61.1839,-6.0206,-61.1839	1/2:2:0,1,1:0:0:1,1:36,36:-6.04956,-3.21998,-2.91895,-3.17967,0,-2.87864	1/1:1:0,1,0:0:0:1,0:28,0:-2.77879,-0.30103,0,-2.77879,-0.30103,-2.77879	1/1:17:0,17,0:0:0:17,0:589,0:-51.8706,-5.11751,0,-51.8706,-5.11751,-51.8706	1/2:197:0,103,93:0:0:103,93:3661,3310:-552.904,-263.568,-232.562,-289.337,0,-261.342	1/1:95:0,95,0:0:0:95,0:3311,0:-285.729,-28.5979,0,-285.729,-28.5979,-285.729	1/1:43:0,43,0:0:0:43,0:1516,0:-132.725,-12.9443,0,-132.725,-12.9443,-132.725	1/1:1:0,1,0:0:0:1,0:36,0:-3.45449,-0.30103,0,-3.45449,-0.30103,-3.45449	1/1:93:0,93,0:0:0:93,0:3235,0:-278.799,-27.9958,0,-278.799,-27.9958,-278.799	1/1:34:0,33,0:0:0:33,0:1180,0:-102.36,-9.93399,0,-102.36,-9.93399,-102.36	1/2:70:0,43,27:0:0:43,27:1508,972:-195.338,-77.8542,-64.9099,-117.83,0,-109.702	1/2:66:0,28,38:0:0:28,38:996,1356:-185.169,-107.432,-99.0036,-78.0801,0,-66.641	1/2:66:0,30,36:0:0:30,36:1050,1284:-183.38,-101.889,-92.858,-81.832,0,-70.9949	1/2:114:0,45,69:0:0:45,69:1566,2430:-316.931,-193.835,-180.289,-123.436,0,-102.665	1/2:65:0,38,27:0:0:38,27:1330,956:-178.759,-75.5149,-64.0757,-103.583,0,-95.4557	1/1:167:0,166,0:0:0:166,0:5802,0:-500.025,-49.971,0,-500.025,-49.971,-500.025	1/1:70:0,69,1:0:0:69,1:2413,36:-207.388,-20.7711,0,-204.536,-17.5694,-204.235	1/2:66:0,38,28:0:0:38,28:1322,1008:-182.905,-80.1459,-68.7067,-103.102,0,-94.6732	1/2:46:0,21,25:0:0:21,25:730,888:-128.055,-70.5623,-64.2407,-57.8341,0,-50.3084	1/2:5:0,4,1:0:0:4,1:127,36:-13.0897,-3.20167,-1.99755,-10.23,0,-9.92901	1/1:86:0,86,0:0:0:86,0:3006,0:-256.497,-25.8886,0,-256.497,-25.8886,-256.497	1/2:56:0,36,20:0:0:36,20:1260,693:-154.672,-55.695,-44.8579,-99.3173,0,-93.2967	1/2:6:0,3,3:0:0:3,3:108,104:-17.3024,-8.69728,-7.79419,-8.9526,0,-8.04951	1/2:100:0,48,52:0:0:48,52:1655,1841:-275.077,-147.019,-132.569,-128.396,0,-112.743	1/1:55:0,54,1:0:0:54,1:1883,36:-161.919,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chr06	1725155	.	T	C	37030.8	PASS	AB=0.515023;ABP=11.3618;AC=46;AF=0.244681;AN=188;AO=2208;CIGAR=1X;DP=9218;DPB=9218;DPRA=0.954851;EPP=4797.62;EPPR=15225;GTI=0;LEN=1;MEANALT=1;MQM=59.5326;MQMR=59.9385;NS=94;NUMALT=1;ODDS=10.6319;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78555;QR=249386;RO=7010;RPL=2208;RPP=4797.62;RPPR=15225;RPR=0;RUN=1;SAF=0;SAP=4797.62;SAR=2208;SRF=0;SRP=15225;SRR=7010;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:14,16:14:500:16:555:-41.2451,0,-36.3053	0/0:120:120,0:120:4260:0:0:0,-36.1236,-383.574	0/1:118:51,67:51:1832:67:2392:-179.962,0,-129.639	0/0:117:117,0:117:4103:0:0:0,-35.2205,-369.456	0/1:59:35,24:35:1260:24:860:-59.9185,0,-95.9447	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/0:107:107,0:107:3790:0:0:0,-32.2102,-341.298	0/1:195:101,94:101:3585:94:3321:-240.321,0,-264.154	0/1:39:11,28:11:392:28:992:-77.8542,0,-23.8799	0/1:103:45,58:45:1586:58:2076:-156.104,0,-112.02	0/1:214:112,102:112:3992:102:3628:-262.275,0,-295.051	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.724	0/1:62:35,27:35:1256:27:972:-69.0772,0,-94.653	0/1:179:73,106:73:2616:106:3782:-286.661,0,-181.803	0/0:64:64,0:64:2269:0:0:0,-19.2659,-204.457	0/1:127:64,63:64:2269:63:2230:-162.714,0,-166.24	0/0:111:111,0:111:3956:0:0:0,-33.4143,-356.233	0/1:85:40,45:40:1432:45:1600:-118.703,0,-103.59	0/0:102:102,0:102:3597:0:0:0,-30.7051,-323.94	0/0:120:120,0:120:4232:0:0:0,-36.1236,-381.059	0/1:124:61,63:61:2160:63:2248:-165.227,0,-157.34	0/0:76:76,0:76:2675:0:0:0,-22.8783,-240.933	0/1:30:8,22:8:280:22:788:-62.1962,0,-16.5084	0/1:92:47,45:47:1668:45:1604:-116.942,0,-122.696	0/0:64:63,1:63:2252:1:36:0,-15.6676,-199.345	0/0:133:133,0:133:4760:0:0:0,-40.037,-428.558	0/1:237:112,125:112:3996:125:4478:-331.761,0,-288.487	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/1:282:155,127:155:5501:127:4544:-324.149,0,-409.898	0/1:107:55,52:55:1945:52:1844:-133.976,0,-142.173	0/0:88:87,1:87:3081:1:36:0,-22.8924,-273.777	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9224	0/1:18:9,9:9:305:9:316:-23.303,0,-22.3587	0/1:12:5,7:5:180:7:233:-17.6528,0,-12.9397	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:210:101,109:101:3616:109:3880:-286.156,0,-262.429	0/0:184:184,0:184:6569:0:0:0,-55.3895,-591.278	0/0:155:155,0:155:5535:0:0:0,-46.6596,-497.903	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:135:134,1:134:4766:1:21:0,-38.5391,-426.997	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/1:105:44,61:44:1557:61:2139:-161.108,0,-108.812	0/1:64:43,21:43:1536:21:756:-49.1013,0,-119.267	0/1:52:25,27:25:896:27:958:-70.7499,0,-65.3068	0/1:55:25,30:25:888:30:1072:-80.2358,0,-63.6824	0/1:113:57,56:57:2048:56:1991:-145.177,0,-150.575	0/0:99:99,0:99:3510:0:0:0,-29.802,-316.109	0/0:72:72,0:72:2561:0:0:0,-21.6742,-230.739	0/1:143:81,62:81:2888:62:2209:-155.992,0,-217.095	0/1:133:62,71:62:2182:71:2513:-186.355,0,-156.606	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:133:133,0:133:4740:0:0:0,-40.037,-426.691	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.776	0/1:19:12,7:12:413:7:248:-16.9446,0,-31.7783	0/1:125:57,68:57:1972:68:2428:-180.949,0,-140.119	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:29:12,17:12:424:17:612:-46.6789,0,-29.7665	0/1:35:15,20:15:540:20:716:-54.2317,0,-38.4005	0/0:61:61,0:61:2153:0:0:0,-18.3628,-194.022	0/0:206:202,4:202:7205:4:144:0,-48.6986,-635.179	0/1:16:7,9:7:252:9:312:-23.5989,0,-18.2125	0/0:90:90,0:90:3166:0:0:0,-27.0927,-285.161	0/0:211:210,1:210:7485:1:36:0,-59.9191,-669.667	0/0:105:105,0:105:3729:0:0:0,-31.6081,-335.811	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:81:80,1:80:2826:1:36:0,-20.7852,-250.979	0/0:63:59,4:59:2093:4:144:0,-5.65127,-175.321	0/0:121:121,0:121:4304:0:0:0,-36.4246,-387.522	0/0:75:75,0:75:2657:0:0:0,-22.5772,-239.376	0/0:126:126,0:126:4496:0:0:0,-37.9298,-404.798	0/1:45:16,29:16:576:29:1021:-78.6457,0,-38.624	0/0:117:117,0:117:4153:0:0:0,-35.2205,-373.955	0/1:85:37,48:37:1328:48:1705:-128.047,0,-94.2313	0/1:119:55,64:55:1960:64:2292:-170.699,0,-140.853	0/1:161:86,75:86:3061:75:2664:-191.261,0,-227.253	0/0:107:107,0:107:3790:0:0:0,-32.2102,-341.27	0/0:142:142,0:142:5043:0:0:0,-42.7463,-453.986	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:130:130,0:130:4652:0:0:0,-39.1339,-418.842	0/0:86:86,0:86:3053:0:0:0,-25.8886,-274.999	0/0:197:197,0:197:7006:0:0:0,-59.3029,-630.603	0/0:105:105,0:105:3739:0:0:0,-31.6081,-336.711	0/0:83:82,1:82:2924:1:36:0,-21.3872,-259.797	0/1:72:36,36:36:1284:36:1275:-93.3699,0,-94.1893	0/0:119:119,0:119:4244:0:0:0,-35.8226,-382.141	0/1:31:12,19:12:417:19:684:-52.5299,0,-28.5283	0/0:104:104,0:104:3708:0:0:0,-31.3071,-333.923	0/1:95:48,47:48:1720:47:1680:-122.861,0,-126.488	0/0:201:201,0:201:7197:0:0:0,-60.507,-647.78	0/1:287:143,144:143:5120:144:5102:-372.847,0,-374.546	0/1:71:21,50:21:752:50:1766:-137.841,0,-46.6331	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226
chr06	1746589	.	G	A	348592	PASS	AB=0.515588;ABP=38.4835;AC=125;AF=0.664894;AN=188;AO=17376;CIGAR=1X;DP=25566;DPB=25566;DPRA=0;EPP=37734.5;EPPR=17774.3;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.8425;MQMR=53.9249;NS=94;NUMALT=1;ODDS=5.42401;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=617853;QR=288632;RO=8184;RPL=32;RPP=37457.1;RPPR=2542.98;RPR=17344;RUN=1;SAF=32;SAP=37457.1;SAR=17344;SRF=2545;SRP=2542.98;SRR=5639;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:159:87,72:87:3035:72:2535:-180.536,0,-215.121	1/1:598:1,597:1:36:597:21191:-1903.01,-176.592,0	0/1:380:294,86:294:10318:86:3088:-163.598,0,-789.08	0/1:585:126,458:126:4414:458:16255:-1286.59,0,-221.21	0/1:422:201,221:201:7102:221:7873:-581.528,0,-499.776	0/1:207:100,107:100:3530:107:3823:-281.947,0,-251.715	1/1:398:0,398:0:0:398:14123:-1270.78,-119.81,0	0/1:460:320,140:320:11287:140:5015:-313.021,0,-860.856	0/1:312:245,67:245:8646:67:2389:-121.344,0,-668.641	0/1:273:148,125:148:5167:125:4441:-317.677,0,-379.482	0/1:80:62,18:62:2184:18:636:-33.2925,0,-170.088	0/1:157:21,136:21:744:136:4827:-387.317,0,-19.9867	0/1:121:96,25:96:3428:25:891:-44.0841,0,-265.687	0/1:159:76,83:76:2643:83:2953:-218.031,0,-187.624	1/1:81:0,81:0:0:81:2876:-259.055,-24.3834,0	0/1:138:100,38:100:3505:38:1364:-81.517,0,-270.824	1/1:133:2,131:2:72:131:4644:-411.452,-33.3662,0	0/1:110:80,30:80:2838:30:1080:-64.4,0,-220.526	1/1:56:0,56:0:0:56:1987:-179.032,-16.8577,0	1/1:513:3,510:3:108:510:18194:-1626.89,-144.353,0	0/1:564:320,244:320:11280:244:8638:-607.26,0,-831.82	1/1:232:0,232:0:0:232:8204:-738.373,-69.839,0	0/1:357:189,168:189:6659:168:5962:-429.165,0,-482.53	0/1:393:252,141:252:8889:141:4994:-331.301,0,-676.14	1/1:239:1,238:1:36:238:8410:-753.306,-68.3479,0	0/1:1137:192,945:192:6737:945:33490:-2670.53,0,-263.976	0/1:657:464,192:464:16466:192:6835:-417.378,0,-1253.92	1/1:60:0,60:0:0:60:2137:-192.592,-18.0618,0	0/1:1048:597,450:597:21111:450:16051:-1128.7,0,-1569.85	0/1:349:249,100:249:8804:100:3555:-214.168,0,-680.227	0/1:485:72,413:72:2556:413:14687:-1175.55,0,-84.1168	0/1:10:4,6:4:129:6:216:-16.7802,0,-8.91736	1/1:22:0,22:0:0:22:775:-70.0712,-6.62266,0	0/1:24:8,16:8:284:16:572:-44.5878,0,-18.3599	0/1:15:7,8:7:239:8:282:-21.2038,0,-17.3273	0/1:11:5,6:5:180:6:216:-16.4764,0,-13.2407	0/1:464:271,193:271:9558:193:6857:-477.52,0,-715.706	1/1:307:1,306:1:36:306:10852:-972.925,-88.8179,0	1/1:89:0,89:0:0:89:3166:-285.156,-26.7917,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.5909	1/1:481:1,480:1:36:480:17102:-1535.02,-141.197,0	1/1:36:0,36:0:0:36:1259:-113.607,-10.8371,0	0/1:418:188,230:188:6659:230:8174:-609.571,0,-462.35	0/1:150:59,91:59:2059:91:3251:-247.647,0,-138.117	0/1:97:69,28:69:2452:28:996:-60.755,0,-188.823	0/1:323:190,133:190:6723:133:4739:-329.431,0,-500.703	0/1:220:155,65:155:5444:65:2301:-141.123,0,-408.771	0/1:526:117,409:117:4159:409:14524:-1148.47,0,-215.898	1/1:365:0,365:0:0:365:12989:-1168.74,-109.876,0	0/1:482:369,113:369:13034:113:4043:-218.954,0,-1018.27	0/1:408:210,198:210:7391:198:7004:-507.601,0,-534.766	0/1:13:7,6:7:252:6:212:-15.5114,0,-18.9036	0/1:454:94,360:94:3264:360:12878:-1022,0,-156.752	0/1:81:14,67:14:481:67:2388:-190.782,0,-17.9104	0/1:12:9,3:9:311:3:108:-6.46281,0,-24.7114	0/1:393:304,89:304:10715:89:3180:-168.118,0,-834.901	1/1:155:1,154:1:36:154:5465:-488.45,-43.1386,0	0/0:12:11,1:11:387:1:36:0,-0.0140849,-30.7769	0/1:23:15,8:15:540:8:271:-17.7954,0,-41.5617	1/1:225:0,225:0:0:225:8007:-720.649,-67.7318,0	0/1:186:57,129:57:2039:129:4618:-359.288,0,-126.754	0/1:5:3,2:3:95:2:68:-4.95256,0,-7.35906	1/1:653:1,652:1:36:652:23297:-2092.45,-192.974,0	1/1:632:4,627:4:144:627:22279:-1991.12,-177.138,0	1/1:276:3,273:3:108:273:9724:-865.025,-73.0091,0	0/1:279:53,226:53:1896:226:8061:-641.476,0,-86.9307	0/1:415:107,308:107:3783:308:10952:-859.838,0,-215.53	1/1:278:7,271:7:252:271:9630:-843.863,-61.0106,0	1/1:23:0,23:0:0:23:820:-74.121,-6.92369,0	1/1:232:0,232:0:0:232:8278:-744.847,-69.839,0	0/1:172:47,125:47:1662:125:4435:-347.486,0,-98.0568	0/1:63:36,27:36:1271:27:953:-67.0416,0,-94.2264	1/1:209:0,209:0:0:209:7458:-671.243,-62.9153,0	0/1:176:108,68:108:3833:68:2417:-164.745,0,-282.264	0/1:495:339,156:339:11922:156:5483:-344.425,0,-908.893	0/1:379:255,124:255:9036:124:4388:-280.994,0,-688.641	1/1:643:1,641:1:36:641:22794:-2047.27,-190.189,0	0/1:517:112,405:112:3960:405:14421:-1141.98,0,-200.782	0/1:26:23,3:23:815:3:108:-2.24839,0,-64.4212	1/1:337:1,336:1:32:336:11983:-1074.59,-98.2478,0	0/1:466:56,410:56:1987:410:14574:-1171.13,0,-36.9946	1/1:623:2,621:2:72:621:22081:-1979.79,-180.705,0	1/1:203:3,200:3:99:200:7151:-634.242,-51.8725,0	0/1:131:38,93:38:1341:93:3318:-259.396,0,-81.3275	0/1:181:79,102:79:2745:102:3643:-273.584,0,-190.115	1/1:189:2,186:2:68:186:6613:-588.814,-50.5346,0	0/1:74:52,22:52:1827:22:792:-49.3295,0,-140.153	1/1:139:0,139:0:0:139:4866:-437.798,-41.8432,0	0/1:155:114,41:114:3986:41:1468:-85.7564,0,-301.109	0/1:47:8,39:8:284:39:1379:-110.257,0,-11.7545	0/1:136:92,44:92:3216:44:1564:-100.043,0,-243.344	0/1:223:170,53:170:5979:53:1872:-101.624,0,-464.929	1/1:210:0,210:0:0:210:7430:-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chr06	1746642	.	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chr06	1754660	.	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chr06	1870403	.	G	A	21866.9	PASS	AB=0.488783;ABP=6.22544;AC=44;AF=0.236559;AN=186;AO=1453;CIGAR=1X;DP=7025;DPB=7025;DPRA=1.03536;EPP=3158.16;EPPR=12087.3;GTI=1;LEN=1;MEANALT=1.03846;MQM=40.3586;MQMR=59.926;NS=93;NUMALT=1;ODDS=2.89789;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51745;QR=196855;RO=5569;RPL=1453;RPP=3158.16;RPPR=12087.3;RPR=0;RUN=1;SAF=1453;SAP=3158.16;SAR=0;SRF=5569;SRP=12095.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:23,11:23:811:11:396:-24.5719,0,-63.0749	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/1:74:30,44:30:1080:44:1580:-115.608,0,-75.237	0/0:217:217,0:217:7732:0:0:0,-65.3235,-695.907	0/1:15:4,11:4:144:11:383:-29.0349,0,-8.79817	0/1:15:4,11:4:144:11:392:-29.9895,0,-8.79817	0/0:102:102,0:102:3593:0:0:0,-30.7051,-323.577	0/1:77:39,38:39:1371:38:1360:-95.715,0,-100.508	0/1:59:26,33:26:888:33:1188:-86.0697,0,-62.4685	0/1:106:53,53:53:1887:53:1904:-130.479,0,-138.199	0/1:67:28,39:28:996:39:1384:-99.0042,0,-69.7859	0/0:102:102,0:102:3552:0:0:0,-30.7051,-319.887	0/1:84:43,41:43:1521:41:1460:-101.628,0,-111.895	0/1:63:36,27:36:1276:27:972:-65.2968,0,-96.1782	0/0:93:93,0:93:3286:0:0:0,-27.9958,-295.962	0/1:61:36,25:36:1260:25:892:-59.2597,0,-95.3368	0/0:51:51,0:51:1774:0:0:0,-15.3525,-159.939	0/1:47:27,20:27:959:20:720:-49.065,0,-72.477	0/0:59:59,0:59:2089:0:0:0,-17.7608,-188.278	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.894	0/1:157:87,69:87:3071:69:2472:-163.255,0,-229.341	0/0:54:54,0:54:1892:0:0:0,-16.2556,-170.555	0/1:62:39,23:39:1387:23:824:-52.3251,0,-106.464	0/1:51:18,33:18:631:33:1184:-87.3038,0,-41.7632	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.134	0/0:190:190,0:190:6722:0:0:0,-57.1957,-605.056	0/0:163:163,0:163:5813:0:0:0,-49.0679,-523.272	0/0:38:38,0:38:1317:0:0:0,-11.4391,-118.806	0/1:185:108,77:108:3774:77:2768:-186.081,0,-283.149	0/1:102:43,59:43:1527:59:2088:-149.388,0,-106.972	0/0:76:74,2:74:2621:2:72:0,-16.3734,-229.632	0/1:25:3,22:3:95:22:764:-58.9989,0,-1.27914	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:6:3,3:3:99:3:108:-7.93977,0,-7.4304	0/1:9:4,5:4:144:5:180:-13.3019,0,-10.6043	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:190:101,89:101:3576:89:3125:-215.97,0,-264.848	0/0:66:66,0:66:2302:0:0:0,-19.868,-207.436	0/0:69:68,1:68:2411:1:27:0,-18.088,-214.564	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	0/0:98:98,0:98:3454:0:0:0,-29.5009,-311.07	0/0:64:64,0:64:2249:0:0:0,-19.2659,-202.672	0/1:73:30,43:30:1062:43:1533:-110.045,0,-73.9148	0/1:59:23,36:23:807:36:1288:-92.96,0,-54.4088	0/1:75:37,38:37:1306:38:1368:-94.3822,0,-95.2627	0/1:67:31,36:31:1083:36:1279:-91.7399,0,-77.609	0/1:62:21,41:21:756:41:1460:-108.448,0,-49.7034	0/0:111:111,0:111:3954:0:0:0,-33.4143,-356.052	0/0:85:85,0:85:3011:0:0:0,-25.5875,-271.178	0/1:112:54,58:54:1923:58:2067:-143.844,0,-139.631	0/1:43:19,24:19:680:24:841:-60.7339,0,-48.5849	0/1:4:1,3:1:36:3:108:-8.38196,0,-2.39415	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:74:74,0:74:2633:0:0:0,-22.2762,-237.208	0/1:29:13,16:13:464:16:561:-40.8047,0,-33.3676	0/1:107:50,57:50:1759:57:2014:-141.692,0,-126.38	0/0:13:12,0:12:428:0:0:0,-3.61236,-38.4992	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/1:14:8,6:8:288:6:216:-14.9294,0,-22.053	0/0:78:78,0:78:2714:0:0:0,-23.4803,-244.502	0/0:99:99,0:99:3514:0:0:0,-29.802,-316.471	.:.:.:.:.:.:.:.	0/0:205:204,1:204:7292:1:36:0,-58.1129,-652.734	0/0:106:103,3:103:3647:3:108:0,-21.997,-318.516	0/0:63:63,0:63:2199:0:0:0,-18.9649,-198.173	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/0:115:115,0:115:4049:0:0:0,-34.6184,-364.597	0/0:79:78,1:78:2778:1:36:0,-20.3578,-246.837	0/0:68:68,0:68:2382:0:0:0,-20.47,-214.638	0/0:50:50,0:50:1757:0:0:0,-15.0515,-158.411	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/1:16:11,5:11:392:5:171:-10.1327,0,-30.7929	0/0:73:72,1:72:2571:1:32:0,-18.7759,-228.44	0/1:86:53,33:53:1887:33:1176:-77.125,0,-144.211	0/1:176:96,79:96:3384:79:2828:-191.093,0,-251.725	0/1:146:96,50:96:3432:50:1780:-108.992,0,-264.986	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:87:87,0:87:3092:0:0:0,-26.1896,-278.509	0/1:36:14,22:14:504:22:792:-58.5351,0,-34.861	0/0:88:88,0:88:3113:0:0:0,-26.4906,-280.389	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:145:144,1:144:5080:1:36:0,-40.0511,-453.75	0/0:61:61,0:61:2153:0:0:0,-18.3628,-193.991	0/0:74:74,0:74:2618:0:0:0,-22.2762,-235.868	0/1:51:27,24:27:954:24:845:-57.1743,0,-70.8214	0/0:150:147,3:147:5168:3:100:0,-36.1332,-456.242	0/1:16:10,6:10:347:6:216:-14.3273,0,-26.7471	0/0:80:80,0:80:2792:0:0:0,-24.0824,-251.484	0/1:69:43,26:43:1522:26:911:-59.2097,0,-116.501	0/0:56:56,0:56:1964:0:0:0,-16.8577,-176.988	0/1:135:87,48:87:3036:48:1701:-107.005,0,-232.807	0/1:77:23,54:23:820:54:1927:-141.567,0,-50.9432	0/0:142:141,1:141:4949:1:36:0,-39.148,-441.961	0/0:114:114,0:114:3975:0:0:0,-34.3174,-357.898
chr06	1870520	.	C	T	141045	PASS	AB=0.482106;ABP=12.4136;AC=141;AF=0.758065;AN=186;AO=6555;CIGAR=1X;DP=8327;DPB=8327;DPRA=22.6168;EPP=14219.6;EPPR=3826.99;GTI=3;LEN=1;MEANALT=1.03261;MQM=59.9396;MQMR=59.9621;NS=93;NUMALT=1;ODDS=0.685434;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=234608;QR=63125;RO=1769;RPL=6553;RPP=14219.6;RPPR=3844.34;RPR=2;RUN=1;SAF=6555;SAP=14237;SAR=0;SRF=1767;SRP=3826.99;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	1/1:115:0,115:0:0:115:4132:-372.062,-34.6185,0	0/1:78:38,40:38:1340:40:1440:-106.417,0,-97.4169	1/1:191:0,191:0:0:191:6823:-614.136,-57.4967,0	0/1:64:32,32:32:1148:32:1144:-84.0036,0,-84.0937	0/1:49:35,14:35:1252:14:504:-30.9476,0,-98.2346	1/1:91:0,91:0:0:91:3257:-293.349,-27.3937,0	0/1:199:114,85:114:4088:85:3056:-215.363,0,-308.2	0/1:36:23,12:23:824:12:432:-28.3253,0,-63.5875	0/1:131:67,64:67:2392:64:2292:-167.106,0,-176.103	0/1:53:20,33:20:720:33:1173:-89.921,0,-49.1742	1/1:71:0,71:0:0:71:2536:-228.456,-21.3731,0	0/1:84:37,47:37:1319:47:1683:-126.47,0,-93.7246	0/1:95:42,53:42:1470:53:1904:-143.04,0,-103.992	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	0/1:58:30,28:30:1067:28:1000:-72.8524,0,-78.8815	1/1:77:0,77:0:0:77:2764:-248.962,-23.1793,0	0/1:67:33,34:33:1184:34:1203:-88.406,0,-86.6993	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	0/1:135:54,81:54:1932:81:2904:-220.956,0,-133.518	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	0/1:96:51,45:51:1810:45:1612:-116.471,0,-134.281	0/1:115:55,60:55:1964:60:2156:-159.688,0,-142.416	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:287:0,287:0:0:287:10298:-926.721,-86.3956,0	1/1:176:0,176:0:0:176:6311:-568.072,-52.9813,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:195:133,62:133:4746:62:2232:-142.443,0,-368.598	0/1:109:53,56:53:1904:56:1995:-147.011,0,-138.824	1/1:78:2,76:2:72:76:2688:-235.326,-16.6436,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	.:.:.:.:.:.:.:.	0/1:4:2,2:2:63:2:72:-5.6326,0,-4.77903	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:203:99,104:99:3536:104:3718:-273.711,0,-257.338	1/1:308:1,307:1:36:307:10975:-983.993,-89.119,0	1/1:76:0,76:0:0:76:2719:-244.95,-22.8783,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:189:0,189:0:0:189:6737:-606.398,-56.8947,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	0/1:111:72,39:72:2537:39:1391:-92.0739,0,-195.167	0/1:82:36,46:36:1292:46:1652:-124.284,0,-91.8993	0/1:55:24,31:24:849:31:1116:-84.1904,0,-60.1711	0/1:100:51,49:51:1819:49:1756:-128.157,0,-133.888	0/1:121:66,55:66:2376:55:1980:-142.05,0,-177.673	1/1:134:0,134:0:0:134:4796:-431.793,-40.338,0	1/1:88:0,88:0:0:88:3140:-282.824,-26.4906,0	0/1:170:70,100:70:2512:100:3578:-271.051,0,-175.157	0/1:139:73,66:73:2589:66:2367:-171.444,0,-191.415	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:121:0,121:0:0:121:4331:-389.965,-36.4246,0	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:96:60,35:60:2137:35:1248:-83.6678,0,-163.639	1/1:36:1,35:1:36:35:1256:-109.739,-7.23881,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:5,5:5:176:5:170:-12.6232,0,-13.1747	1/1:37:0,37:0:0:37:1328:-119.821,-11.1381,0	1/1:127:1,125:1:36:125:4492:-400.834,-34.6114,0	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:253:1,252:1:36:252:9029:-808.987,-72.5623,0	1/1:179:1,178:1:36:178:6387:-571.317,-50.2861,0	1/1:56:0,56:0:0:56:1986:-179.013,-16.8577,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:128:1,127:1:36:127:4545:-405.617,-34.9336,0	1/1:139:0,139:0:0:139:4979:-448.255,-41.8432,0	1/1:44:1,43:1:36:43:1548:-136.015,-9.64705,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	1/1:109:0,109:0:0:109:3911:-352.18,-32.8123,0	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	1/1:44:0,44:0:0:44:1576:-142.106,-13.2453,0	0/1:50:29,21:29:1040:21:756:-53.3157,0,-78.8629	0/1:145:83,62:83:2976:62:2220:-156.415,0,-223.646	0/1:122:50,72:50:1800:72:2573:-194.315,0,-125.557	1/1:89:1,88:1:36:88:3155:-280.576,-23.1934,0	1/1:155:3,152:3:104:152:5421:-478.295,-36.9568,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:127:0,127:0:0:127:4537:-408.495,-38.2308,0	1/1:34:0,34:0:0:34:1205:-108.755,-10.235,0	1/1:143:0,143:0:0:143:5123:-461.209,-43.0473,0	1/1:112:1,111:1:36:111:3975:-354.339,-30.1171,0	1/1:53:0,53:0:0:53:1891:-170.467,-15.9546,0	0/1:88:41,47:41:1464:47:1673:-124.366,0,-105.565	1/1:143:0,143:0:0:143:5086:-457.885,-43.0473,0	0/1:31:17,14:17:612:14:504:-36.3662,0,-46.0815	1/1:76:0,76:0:0:76:2716:-244.684,-22.8783,0	0/1:78:48,30:48:1700:30:1080:-74.0329,0,-129.803	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	0/1:83:43,40:43:1519:40:1427:-103.737,0,-112.017	0/1:64:34,30:34:1212:30:1061:-76.5343,0,-90.1204	1/1:166:0,166:0:0:166:5922:-533.012,-49.971,0	1/1:115:2,113:2:72:113:4041:-357.041,-27.7817,0
chr06	1870535	.	GACA	AACA,AACC	180238	PASS	AB=0.484476,0.511716;ABP=10.157,7.08102;AC=141,45;AF=0.758065,0.241935;AN=186;AO=6570,1768;CIGAR=1X3M,1X2M1X;DP=8362;DPB=8365.75;DPRA=22.712,1.02399;EPP=14269.6,3824.82;EPPR=5.18177;GTI=3;LEN=1,4;MEANALT=1.82609,2.19298;MQM=59.9519,59.9627;MQMR=60;NS=93;NUMALT=2;ODDS=0.536142;PAIRED=0,0;PAIREDR=0;PAO=7.5,7.5;PQA=270,270;PQR=0;PRO=0;QA=235319,60945;QR=35;RO=1;RPL=6570,1768;RPP=14269.6,3842.17;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=6570,1766;SAP=14269.6,3824.82;SAR=0,2;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:19:0,6,13:0:0:6,13:216,445:-54.0936,-36.4635,-34.6573,-17.9843,0,-14.0709	1/1:115:0,115,0:0:0:115,0:4109,0:-369.994,-34.6185,0,-369.994,-34.6185,-369.994	1/2:84:0,44,40:0:0:44,40:1579,1396:-242.699,-113.896,-100.651,-129.156,0,-117.115	1/1:190:0,190,0:0:0:190,0:6808,0:-612.79,-57.1957,0,-612.79,-57.1957,-612.79	1/2:64:0,33,31:0:0:33,31:1184,1092:-185.837,-89.2574,-79.3234,-96.9343,0,-87.6024	1/2:48:0,14,34:0:0:14,34:504,1197:-138.926,-97.8002,-93.5858,-41.4837,0,-31.2487	1/1:91:0,91,0:0:0:91,0:3264,0:-293.977,-27.3937,0,-293.977,-27.3937,-293.977	1/2:202:0,86,114:0:0:86,114:3092,3867:-565.879,-313.619,-287.731,-252.309,0,-217.991	1/2:35:0,12,23:0:0:12,23:428,797:-100.017,-65.1233,-61.5109,-35.2464,0,-28.3228	1/2:134:0,67,67:0:0:67,67:2400,2302:-383.011,-187.274,-167.105,-196.088,0,-175.919	1/2:55:0,34,21:0:0:34,21:1224,741:-160.51,-60.6353,-50.4002,-100.174,0,-93.852	1/1:72:0,72,0:0:0:72,0:2588,0:-233.129,-21.6742,0,-233.129,-21.6742,-233.129	1/2:83:0,46,37:0:0:46,37:1652,1254:-236.792,-102.019,-88.1716,-135.121,0,-123.983	1/2:95:0,54,41:0:0:54,41:1920,1404:-270.725,-114.254,-97.9986,-156.761,0,-144.418	1/1:80:0,80,0:0:0:80,0:2850,0:-256.737,-24.0824,0,-256.737,-24.0824,-256.737	1/2:58:0,28,30:0:0:28,30:1008,1047:-167.755,-85.5098,-77.081,-82.5993,0,-73.5684	1/1:78:0,78,0:0:0:78,0:2799,0:-252.11,-23.4803,0,-252.11,-23.4803,-252.11	1/2:68:0,35,33:0:0:35,33:1256,1152:-196.508,-94.0525,-83.5164,-102.809,0,-92.8752	1/1:59:0,58,0:0:0:58,0:2080,0:-187.11,-17.4597,0,-187.11,-17.4597,-187.11	1/1:84:0,84,0:0:0:84,0:3016,0:-271.67,-25.2865,0,-271.67,-25.2865,-271.67	1/2:136:0,82,53:0:0:82,53:2927,1834:-387.714,-149.083,-124.399,-238.679,0,-222.725	1/1:35:0,35,0:0:0:35,0:1256,0:-113.287,-10.5361,0,-113.287,-10.5361,-113.287	1/2:95:0,45,50:0:0:45,50:1620,1736:-273.659,-141.47,-127.923,-132.544,0,-117.492	1/2:119:0,64,55:0:0:64,55:2304,1908:-343.441,-155.439,-136.173,-188.355,0,-171.798	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:288:0,285,0:0:0:285,0:10194,0:-917.036,-85.7936,0,-917.036,-85.7936,-917.036	1/1:175:0,174,0:0:0:174,0:6200,0:-557.668,-52.3792,0,-557.668,-52.3792,-557.668	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/2:195:0,63,132:0:0:63,132:2233,4573:-553.926,-372.01,-353.046,-182.268,0,-142.532	1/2:110:0,57,53:0:0:57,53:2035,1821:-314.127,-148.214,-131.055,-166.263,0,-150.308	1/1:80:0,78,2:0:0:78,2:2795,65:-251.459,-23.4803,0,-246.214,-17.9094,-245.612	1/2:5:0,1,4:0:0:1,4:36,130:-13.7617,-10.8173,-10.5163,-3.29724,0,-2.09312	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	.:.:.:.:.:.:.:.	1/2:4:0,2,2:0:0:2,2:72,71:-12.0173,-6.14,-5.53794,-6.23466,0,-5.6326	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:207:0,105,98:0:0:105,98:3743,3362:-578.114,-273.002,-241.394,-305.158,0,-275.657	1/1:306:0,305,1:0:0:305,1:10924,36:-982.473,-91.8142,0,-979.535,-88.5169,-979.234	1/1:79:0,79,0:0:0:79,0:2828,0:-254.758,-23.7814,0,-254.758,-23.7814,-254.758	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:191:1,190,0:1:35:190,0:6816,0:-610.001,-53.9981,0,-610.302,-57.1957,-613.15	1/1:50:0,50,0:0:0:50,0:1792,0:-161.503,-15.0515,0,-161.503,-15.0515,-161.503	1/2:110:0,38,71:0:0:38,71:1356,2414:-306.404,-195.853,-184.414,-110.61,0,-89.2365	1/2:83:0,46,36:0:0:46,36:1639,1273:-237.391,-103.794,-89.9463,-133.708,0,-122.871	1/2:55:0,31,24:0:0:31,24:1108,832:-158.313,-67.9693,-58.6374,-90.6945,0,-83.4697	1/2:99:0,48,51:0:0:48,51:1720,1769:-284.357,-144.138,-129.688,-140.572,0,-125.219	1/2:122:0,54,66:0:0:54,66:1940,2265:-342.193,-183.924,-167.669,-158.299,0,-138.431	1/1:129:0,128,1:0:0:128,1:4589,36:-412.755,-38.5318,0,-409.817,-35.2346,-409.516	1/1:87:0,87,0:0:0:87,0:3116,0:-280.667,-26.1896,0,-280.667,-26.1896,-280.667	1/2:172:0,102,70:0:0:102,70:3660,2399:-493.643,-195.094,-164.389,-298.898,0,-277.826	1/2:140:0,67,73:0:0:67,73:2408,2524:-401.893,-205.439,-185.27,-196.807,0,-174.832	1/2:7:0,6,1:0:0:6,1:216,36:-20.9217,-3.29724,-1.49106,-17.9843,0,-17.6833	1/1:120:0,120,0:0:0:120,0:4274,0:-384.84,-36.1236,0,-384.84,-36.1236,-384.84	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/2:12:0,7,4:0:0:7,4:252,119:-30.1278,-9.5263,-7.41909,-20.6405,0,-19.4364	1/2:95:0,33,61:0:0:33,61:1188,2109:-268.291,-171.351,-161.417,-96.9348,0,-78.5719	1/1:36:0,35,1:0:0:35,1:1252,36:-112.617,-10.5361,0,-109.68,-7.23881,-1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chr06	1875744	.	C	T	179336	PASS	AB=0.49329;ABP=4.70045;AC=141;AF=0.75;AN=188;AO=8334;CIGAR=1X;DP=10562;DPB=10562;DPRA=22.7032;EPP=18022;EPPR=4828.03;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9827;MQMR=59.9766;NS=94;NUMALT=1;ODDS=1.89504;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=297963;QR=79593;RO=2226;RPL=8;RPP=18030.6;RPPR=4828.03;RPR=8326;RUN=1;SAF=8333;SAP=18091.4;SAR=1;SRF=2226;SRP=4836.71;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:31,6:31:1112:6:216:-8.6524,0,-89.2532	1/1:122:0,122:0:0:122:4350:-391.674,-36.7257,0	0/1:150:65,85:65:2307:85:3044:-229.035,0,-162.736	1/1:182:1,181:1:36:181:6496:-580.634,-51.1892,0	0/1:51:23,28:23:824:28:1004:-75.3233,0,-58.3512	0/1:39:21,18:21:756:18:636:-45.8279,0,-56.6271	1/1:153:0,153:0:0:153:5461:-491.618,-46.0576,0	0/1:106:54,52:54:1927:52:1842:-134.15,0,-141.797	0/1:80:49,31:49:1751:31:1103:-75.4974,0,-133.791	0/1:95:54,41:54:1936:41:1472:-104.178,0,-145.919	0/1:139:48,91:48:1710:91:3264:-252.136,0,-112.341	1/1:111:0,111:0:0:111:3971:-357.58,-33.4143,0	0/1:113:53,60:53:1908:60:2156:-160.291,0,-137.981	0/1:162:79,83:79:2828:83:2960:-217.865,0,-205.992	1/1:97:0,97:0:0:97:3472:-312.692,-29.1999,0	0/1:87:47,40:47:1688:40:1440:-103.708,0,-126.017	1/1:112:0,112:0:0:112:3995:-359.741,-33.7154,0	0/1:79:27,52:27:972:52:1864:-144.258,0,-64.0165	1/1:78:1,77:1:36:77:2752:-244.324,-19.8821,0	1/1:209:0,209:0:0:209:7440:-669.451,-62.9153,0	0/1:123:80,43:80:2856:43:1544:-102.226,0,-220.252	1/1:138:0,138:0:0:138:4929:-443.761,-41.5421,0	0/1:121:55,66:55:1936:66:2360:-176.234,0,-138.089	0/1:104:52,52:52:1856:52:1853:-135.742,0,-136.013	1/1:64:0,64:0:0:64:2285:-205.911,-19.2659,0	1/1:188:1,187:1:36:187:6703:-599.746,-52.9954,0	1/1:181:0,181:0:0:181:6476:-582.926,-54.4864,0	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	0/1:340:166,174:166:5935:174:6205:-456.198,0,-431.908	0/1:177:94,83:94:3360:83:2961:-213.439,0,-249.335	1/1:136:1,135:1:36:135:4807:-429.19,-37.3418,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:36:1,35:1:36:35:1260:-110.107,-7.23881,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:3,2:3:104:2:68:-4.95256,0,-8.19766	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	0/1:249:136,113:136:4879:113:4045:-289.267,0,-364.304	1/1:209:0,209:0:0:209:7471:-672.432,-62.9153,0	1/1:100:0,100:0:0:100:3572:-321.685,-30.103,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:252:1,251:1:36:251:8991:-805.57,-72.2613,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:103:46,57:46:1647:57:2044:-153.226,0,-117.507	0/1:114:53,61:53:1904:61:2180:-162.149,0,-137.32	0/1:90:42,48:42:1494:48:1695:-125.742,0,-107.66	0/1:90:37,53:37:1316:53:1898:-144.005,0,-91.6491	0/1:100:54,46:54:1932:46:1644:-118.146,0,-144.049	1/1:144:0,144:0:0:144:5144:-463.103,-43.3483,0	1/1:126:0,126:0:0:126:4491:-404.357,-37.9298,0	0/1:111:60,51:60:2152:51:1832:-131.746,0,-160.533	0/1:182:101,81:101:3593:81:2859:-202.759,0,-268.789	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	1/1:248:0,248:0:0:248:8860:-797.384,-74.6554,0	1/1:79:2,77:2:72:77:2751:-240.993,-16.9446,0	0/1:28:17,11:17:608:11:396:-27.5539,0,-46.6232	0/1:138:67,71:67:2391:71:2536:-186.949,0,-173.905	1/1:39:1,38:1:32:38:1368:-120.222,-8.54086,0	0/0:13:12,1:12:420:1:36:0,-0.315115,-34.5357	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	1/1:90:0,89:0:0:89:3180:-286.212,-26.7917,0	1/1:193:0,193:0:0:193:6903:-621.337,-58.0988,0	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	1/1:221:0,221:0:0:221:7923:-713.091,-66.5276,0	1/1:156:2,154:2:72:154:5497:-488.013,-40.124,0	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:98:0,97:0:0:97:3480:-313.051,-29.1999,0	1/1:209:1,208:1:36:208:7424:-664.608,-59.317,0	1/1:137:1,136:1:36:136:4880:-435.753,-37.6428,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:55:0,55:0:0:55:1961:-176.764,-16.5567,0	1/1:125:0,125:0:0:125:4471:-402.559,-37.6288,0	0/1:22:12,10:12:428:10:356:-25.7586,0,-32.2361	1/1:131:0,131:0:0:131:4684:-421.72,-39.4349,0	0/1:63:43,20:43:1532:20:705:-44.8079,0,-119.2	0/1:212:104,108:104:3736:108:3856:-283.418,0,-272.621	0/1:176:88,88:88:3156:88:3147:-230.474,0,-231.283	1/1:127:0,127:0:0:127:4537:-408.496,-38.2308,0	1/1:93:2,91:2:72:91:3276:-288.222,-21.1591,0	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	1/1:71:1,70:1:36:70:2503:-221.878,-17.7749,0	1/1:130:0,130:0:0:130:4646:-418.303,-39.1339,0	1/1:205:1,204:1:36:204:7320:-655.249,-58.1129,0	1/1:123:0,123:0:0:123:4402:-396.351,-37.0267,0	1/1:128:1,127:1:36:127:4540:-405.169,-34.9336,0	0/1:107:61,46:61:2183:46:1644:-116.038,0,-164.525	1/1:173:0,173:0:0:173:6204:-558.455,-52.0782,0	0/1:68:35,33:35:1256:33:1180:-86.038,0,-92.8752	1/1:121:0,121:0:0:121:4316:-388.615,-36.4246,0	0/1:85:41,44:41:1464:44:1584:-117.264,0,-106.469	1/1:135:1,134:1:36:134:4804:-428.916,-37.0408,0	0/1:221:98,123:98:3520:123:4384:-328.203,0,-250.481	0/1:78:52,26:52:1856:26:915:-59.1852,0,-143.839	1/1:112:0,112:0:0:112:4002:-360.369,-33.7154,0	1/1:115:0,115:0:0:115:4119:-370.894,-34.6185,0
chr06	1875773	.	C	T	35724	PASS	AB=0.507082;ABP=4.85574;AC=47;AF=0.25;AN=188;AO=2184;CIGAR=1X;DP=10372;DPB=10372;DPRA=0.840376;EPP=4745.51;EPPR=17743.9;GTI=2;LEN=1;MEANALT=1.06557;MQM=59.9899;MQMR=59.9841;NS=94;NUMALT=1;ODDS=3.53881;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77103;QR=281889;RO=8182;RPL=2184;RPP=4745.51;RPPR=17752.6;RPR=0;RUN=1;SAF=2184;SAP=4745.51;SAR=0;SRF=8181;SRP=17761.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:7,30:7:218:30:1041:-82.8575,0,-8.78628	0/0:123:123,0:123:4260:0:0:0,-37.0267,-383.583	0/1:147:83,64:83:2801:64:2300:-163.009,0,-208.072	0/0:181:180,1:180:6209:1:36:0,-50.8882,-554.832	0/1:49:27,22:27:944:22:779:-55.6816,0,-70.5236	0/1:39:18,21:18:631:21:743:-55.4532,0,-45.3755	0/0:145:145,0:145:5052:0:0:0,-43.6493,-454.831	0/1:103:49,54:49:1718:54:1895:-139.819,0,-123.898	0/1:77:30,47:30:1044:47:1649:-125.515,0,-71.0876	0/1:93:40,53:40:1371:53:1870:-140.58,0,-95.6871	0/1:137:90,47:90:3155:47:1675:-109.795,0,-242.936	0/0:110:110,0:110:3672:0:0:0,-33.1133,-330.693	0/1:111:60,51:60:2026:51:1814:-130.126,0,-149.192	0/1:155:79,76:79:2687:76:2656:-192.625,0,-195.415	0/0:95:95,0:95:3257:0:0:0,-28.5978,-293.35	0/1:88:41,47:41:1432:47:1676:-124.637,0,-102.682	0/0:106:106,0:106:3583:0:0:0,-31.9092,-322.68	0/1:78:51,27:51:1753:27:950:-62.3323,0,-134.568	0/0:76:74,1:74:2565:1:36:0,-19.2639,-227.572	0/0:205:205,0:205:6980:0:0:0,-61.7111,-628.229	0/1:123:44,79:44:1516:79:2792:-214.493,0,-99.6998	0/0:140:139,0:139:4810:0:0:0,-41.8432,-432.782	0/1:118:66,52:66:2320:52:1814:-128.013,0,-173.538	0/1:101:51,50:51:1763:50:1768:-128.998,0,-128.543	0/0:63:63,0:63:2211:0:0:0,-18.9649,-199.253	0/0:179:179,0:179:6225:0:0:0,-53.8844,-560.36	0/0:174:174,0:174:5994:0:0:0,-52.3792,-539.582	0/0:41:41,0:41:1368:0:0:0,-12.3422,-123.409	0/1:334:167,166:167:5756:166:5875:-428.258,0,-417.563	0/1:178:83,95:83:2896:95:3368:-249.753,0,-207.292	0/0:137:136,1:136:4658:1:36:0,-37.6428,-415.788	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:35:34,1:34:1195:1:36:0,-6.93777,-104.256	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:241:107,134:107:3677:134:4711:-351.601,0,-258.59	0/0:204:204,0:204:7156:0:0:0,-61.4101,-644.107	0/0:98:98,0:98:3367:0:0:0,-29.5009,-303.246	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/0:252:251,1:251:8726:1:36:0,-72.2613,-781.751	0/0:83:83,0:83:2866:0:0:0,-24.9855,-258.178	0/1:99:55,44:55:1930:44:1537:-108.814,0,-144.174	0/1:117:61,55:61:2062:55:1960:-141.396,0,-150.566	0/1:86:46,40:46:1580:40:1396:-100.045,0,-116.596	0/1:89:52,37:52:1822:37:1320:-92.3103,0,-137.468	0/1:96:46,49:46:1605:49:1750:-128.971,0,-115.926	0/0:143:143,0:143:4970:0:0:0,-43.0473,-447.454	0/0:126:126,0:126:4402:0:0:0,-37.9298,-396.355	0/1:109:50,59:50:1749:59:2106:-156.996,0,-124.879	0/1:176:77,99:77:2615:99:3459:-258.54,0,-182.614	0/1:11:5,6:5:180:6:207:-15.6556,0,-13.2407	0/0:240:240,0:240:8430:0:0:0,-72.2472,-758.715	0/0:77:75,2:75:2583:2:72:0,-16.3426,-225.879	0/1:27:11,16:11:396:16:561:-42.6893,0,-27.8549	0/1:132:68,64:68:2348:64:2265:-164.373,0,-171.841	0/0:36:35,1:35:1219:1:36:0,-7.2388,-106.412	1/1:13:1,12:1:36:12:411:-33.7191,-0.315115,0	0/1:27:14,13:14:496:13:459:-33.5163,0,-36.8465	0/0:90:90,0:90:3150:0:0:0,-27.0927,-283.595	0/0:193:193,0:193:6525:0:0:0,-58.0988,-587.355	0/1:11:6,5:6:216:5:171:-12.4141,0,-16.4792	0/0:218:217,1:217:7587:1:36:0,-62.0263,-679.282	0/0:153:151,2:151:5153:2:72:0,-39.2209,-457.084	0/0:54:52,2:52:1800:2:72:0,-9.4189,-155.442	0/0:102:102,0:102:3505:0:0:0,-30.7051,-315.664	0/0:209:208,1:208:7242:1:36:0,-59.317,-648.247	0/0:135:134,1:134:4678:1:36:0,-37.0408,-417.584	0/0:68:68,0:68:2350:0:0:0,-20.47,-211.756	0/0:58:58,0:58:1952:0:0:0,-17.4597,-175.945	0/0:123:123,0:123:4208:0:0:0,-37.0267,-378.905	0/1:23:11,12:11:362:12:432:-32.2975,0,-25.9721	0/0:127:127,0:127:4344:0:0:0,-38.2308,-391.144	0/1:64:20,44:20:693:44:1548:-120.342,0,-43.4235	0/1:207:106,101:106:3637:101:3532:-255.776,0,-265.221	0/1:174:86,88:86:2931:88:3125:-229.097,0,-211.645	0/0:124:124,0:124:4314:0:0:0,-37.3277,-388.438	0/0:91:89,2:89:3048:2:72:0,-20.557,-267.71	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:70:69,1:69:2378:1:36:0,-17.4738,-210.677	0/0:129:128,1:128:4386:1:36:0,-35.2346,-391.322	0/0:204:203,1:203:7027:1:36:0,-57.8118,-628.863	0/0:119:119,0:119:4070:0:0:0,-35.8226,-366.494	0/0:126:126,0:126:4328:0:0:0,-37.9298,-389.708	0/1:109:48,61:48:1607:61:2144:-160.414,0,-112.097	0/0:168:168,0:168:5691:0:0:0,-50.573,-512.326	0/1:65:32,33:32:1090:33:1172:-86.2205,0,-78.8341	0/0:117:116,0:116:3923:0:0:0,-34.9195,-353.051	0/1:85:43,42:43:1433:42:1454:-105.562,0,-103.668	0/0:133:133,0:133:4495:0:0:0,-40.037,-404.73	0/1:209:117,92:117:3947:92:3254:-230.165,0,-292.511	0/1:79:26,53:26:921:53:1880:-145.697,0,-59.4238	0/0:112:112,0:112:3851:0:0:0,-33.7154,-346.788	0/0:111:111,0:111:3766:0:0:0,-33.4143,-339.145
chr06	1897982	.	TCT	ACA,TCA	70180.8	PASS	AB=0.490995,0.50509;ABP=3.90984,3.29768;AC=145,43;AF=0.771277,0.228723;AN=188;AO=2660,650;CIGAR=1X1M1X,2M1X;DP=3322;DPB=3322;DPRA=0,0.957572;EPP=5779.13,1414.47;EPPR=5.18177;GTI=0;LEN=3,1;MEANALT=1.61702,2.12766;MQM=46.5756,58.5692;MQMR=37;NS=94;NUMALT=2;ODDS=0.58993;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=94002,23289;QR=24;RO=1;RPL=2660,650;RPP=5779.13,1414.47;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=5779.13,1414.47;SAR=2660,650;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:15:0,3,12:0:0:3,12:108,424:-43.4121,-34.6837,-33.7806,-9.08398,0,-5.47162	1/1:32:0,32,0:0:0:32,0:1133,0:-100.384,-9.63296,0,-100.384,-9.63296,-100.384	1/2:71:0,40,31:0:0:40,31:1418,1116:-204.956,-91.3358,-79.2946,-113.975,0,-104.643	1/1:88:0,87,0:0:0:87,0:3079,0:-272.737,-26.1896,0,-272.737,-26.1896,-272.737	1/2:40:0,10,30:0:0:10,30:360,1068:-116.311,-87.3474,-84.3371,-29.3193,0,-20.2884	1/2:4:0,2,2:0:0:2,2:61,72:-10.9729,-6.23275,-5.63069,-5.06922,0,-4.46716	1/1:16:0,16,0:0:0:16,0:576,0:-51.7248,-4.81648,0,-51.7248,-4.81648,-51.7248	1/2:65:0,30,35:0:0:30,35:1055,1252:-187.163,-102.059,-93.0281,-85.4562,0,-74.9201	1/2:35:0,10,25:0:0:10,25:352,896:-101.362,-72.9685,-69.9582,-28.745,0,-21.2192	1/2:29:0,9,20:0:0:9,20:322,720:-85.0995,-59.0884,-56.3791,-26.3673,0,-20.3467	1/2:10:0,6,4:0:0:6,4:206,144:-28.6974,-12.1086,-10.3024,-16.941,0,-15.7369	1/1:31:0,31,0:0:0:31,0:1096,0:-98.1837,-9.33193,0,-98.1837,-9.33193,-98.1837	1/2:27:0,18,9:0:0:18,9:628,324:-77.4191,-26.7883,-21.3698,-50.986,0,-48.2767	1/2:23:0,10,13:0:0:10,13:358,468:-65.8558,-38.5453,-35.535,-27.6574,0,-23.744	1/1:22:0,22,0:0:0:22,0:775,0:-69.4931,-6.62266,0,-69.4931,-6.62266,-69.4931	1/2:23:0,15,8:0:0:15,8:524,288:-65.4208,-23.8576,-19.3422,-41.9166,0,-39.5083	1/1:11:0,11,0:0:0:11,0:392,0:-35.3262,-3.31133,0,-35.3262,-3.31133,-35.3262	1/1:25:0,25,0:0:0:25,0:900,0:-80.6576,-7.52575,0,-80.6576,-7.52575,-80.6576	1/1:10:0,10,0:0:0:10,0:360,0:-32.458,-3.0103,0,-32.458,-3.0103,-32.458	1/1:61:0,61,0:0:0:61,0:2154,0:-192.447,-18.3628,0,-192.447,-18.3628,-192.447	1/2:53:0,23,29:0:0:23,29:814,1036:-150.038,-84.3442,-77.4205,-65.7251,0,-56.9952	1/1:44:1,42,0:1:24:42,0:1493,0:-130.077,-10.8241,0,-130.378,-12.6433,-132.215	1/2:46:0,29,16:0:0:29,16:1001,576:-127.683,-47.0742,-38.3443,-80.6774,0,-75.8609	1/2:21:0,12,9:0:0:12,9:420,324:-60.2533,-26.7966,-23.1842,-33.8095,0,-31.1002	1/1:30:0,30,0:0:0:30,0:1063,0:-95.175,-9.0309,0,-95.175,-9.0309,-95.175	1/1:114:0,112,1:0:0:112,1:3920,36:-348.865,-33.7154,0,-345.927,-30.7764,-345.626	1/1:71:0,71,0:0:0:71,0:2514,0:-222.694,-21.3731,0,-222.694,-21.3731,-222.694	1/1:10:0,10,0:0:0:10,0:356,0:-32.1158,-3.0103,0,-32.1158,-3.0103,-32.1158	1/2:85:0,52,33:0:0:52,33:1865,1184:-247.607,-96.9343,-81.2808,-151.03,0,-141.096	1/2:39:0,16,23:0:0:16,23:572,817:-112.821,-66.9038,-62.0873,-46.2709,0,-39.3472	1/1:64:0,63,1:0:0:63,1:2244,36:-199.126,-18.9649,0,-196.189,-15.6687,-195.888	1/2:20:0,13,7:0:0:13,7:442,252:-56.308,-20.903,-16.9896,-35.7563,0,-33.6491	1/1:16:0,16,0:0:0:16,0:576,0:-51.1877,-4.81648,0,-51.1877,-4.81648,-51.1877	1/1:1:0,1,0:0:0:1,0:36,0:-3.56681,-0.30103,0,-3.56681,-0.30103,-3.56681	1/2:8:0,6,2:0:0:6,2:201,72:-21.6435,-6.23275,-4.42657,-15.7604,0,-15.1583	1/1:20:0,20,0:0:0:20,0:699,0:-62.7714,-6.0206,0,-62.7714,-6.0206,-62.7714	1/2:58:0,40,18:0:0:40,18:1415,648:-167.366,-53.2238,-41.1826,-114.499,0,-109.08	1/1:61:0,60,0:0:0:60,0:2104,0:-187.662,-18.0618,0,-187.662,-18.0618,-187.662	1/1:9:0,9,0:0:0:9,0:308,0:-27.349,-2.70927,0,-27.349,-2.70927,-27.349	1/2:6:0,4,2:0:0:4,2:141,72:-17.6089,-6.23466,-5.03054,-11.7306,0,-11.1285	1/1:42:0,42,0:0:0:42,0:1493,0:-133.539,-12.6433,0,-133.539,-12.6433,-133.539	1/1:24:0,24,0:0:0:24,0:864,0:-77.4237,-7.22472,0,-77.4237,-7.22472,-77.4237	1/2:43:0,19,24:0:0:19,24:674,860:-124.154,-70.4762,-64.7566,-54.03,0,-46.8053	1/2:15:0,9,6:0:0:9,6:310,216:-42.7203,-17.9843,-15.2751,-25.0874,0,-23.2812	1/2:20:0,11,9:0:0:11,9:379,324:-57.3087,-26.7966,-23.4853,-30.8638,0,-28.1546	1/2:58:0,23,33:0:0:23,33:806,1188:-161.497,-96.9639,-90.0402,-64.5534,0,-54.6194	1/2:31:0,10,21:0:0:10,21:351,752:-89.9699,-61.6661,-58.6558,-28.655,0,-22.3333	1/1:57:0,57,0:0:0:57,0:2010,0:-178.521,-17.1587,0,-178.521,-17.1587,-178.521	1/1:31:0,30,0:0:0:30,0:1075,0:-95.4052,-9.0309,0,-95.4052,-9.0309,-95.4052	1/2:52:0,29,23:0:0:29,23:1032,828:-151.251,-67.8755,-59.1456,-83.7326,0,-76.8089	1/2:53:0,23,29:0:0:23,29:793,1032:-147.664,-84.1104,-77.1867,-63.5616,0,-54.8317	1/2:7:0,4,3:0:0:4,3:144,108:-20.784,-9.14889,-7.94477,-11.9931,0,-11.09	1/1:67:0,67,0:0:0:67,0:2397,0:-212.565,-20.169,0,-212.565,-20.169,-212.565	1/1:32:0,32,0:0:0:32,0:1129,0:-100.546,-9.63296,0,-100.546,-9.63296,-100.546	1/2:5:0,1,4:0:0:1,4:36,144:-15.0143,-12.1058,-11.8047,-3.26578,0,-2.06166	1/2:44:0,24,20:0:0:24,20:800,707:-121.951,-57.9092,-50.6845,-64.3846,0,-58.364	1/1:8:0,8,0:0:0:8,0:266,0:-24.0909,-2.40824,0,-24.0909,-2.40824,-24.0909	1/2:17:0,6,11:0:0:6,11:214,396:-49.8983,-32.6149,-30.8087,-17.6389,0,-14.3276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chr06	1915422	.	C	A	243599	PASS	AB=0.585885;ABP=222.704;AC=147;AF=0.798913;AN=184;AO=8470;CIGAR=1X;DP=9907;DPB=9907;DPRA=108.857;EPP=13308.1;EPPR=1934.52;GTI=4;LEN=1;MEANALT=1.04396;MQM=59.9713;MQMR=59.9867;NS=92;NUMALT=1;ODDS=3.20059;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302346;QR=50985;RO=1433;RPL=4659;RPP=187.369;RPPR=4.11498;RPR=3811;RUN=1;SAF=5292;SAP=1148.74;SAR=3178;SRF=855;SRP=119.28;SRR=578;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:13,24:13:447:24:856:-66.223,0,-29.4196	1/1:76:0,76:0:0:76:2709:-244.052,-22.8783,0	0/1:132:42,90:42:1472:90:3206:-249.024,0,-93.0358	1/1:244:0,244:0:0:244:8704:-783.352,-73.4513,0	1/1:41:3,38:3:108:38:1368:-113.344,-2.26706,0	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.6223	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	0/1:63:22,41:22:788:41:1472:-113.811,0,-52.2799	0/1:109:41,68:41:1450:68:2428:-185.963,0,-97.9822	0/1:81:29,52:29:1040:52:1856:-142.936,0,-69.5309	0/1:128:55,73:55:1968:73:2601:-195.805,0,-138.863	1/1:130:0,130:0:0:130:4666:-420.08,-39.1339,0	0/1:55:28,27:28:989:27:968:-70.8807,0,-72.7654	0/1:153:79,74:79:2827:74:2648:-192.508,0,-208.611	1/1:170:0,170:0:0:170:6079:-547.21,-51.1751,0	0/1:110:58,52:58:2043:52:1860:-134.566,0,-151.026	1/1:51:0,51:0:0:51:1805:-162.459,-15.3525,0	1/1:34:0,34:0:0:34:1209:-109.114,-10.235,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:190:0,190:0:0:190:6753:-607.826,-57.1957,0	0/1:147:43,104:43:1520:104:3720:-290.75,0,-92.8417	1/1:98:0,98:0:0:98:3488:-314.13,-29.5009,0	0/1:87:43,44:43:1544:44:1569:-115.31,0,-113.063	0/1:48:15,33:15:536:33:1180:-92.0586,0,-34.1254	1/1:85:0,85:0:0:85:3018:-271.849,-25.5876,0	1/1:265:0,265:0:0:265:9465:-851.811,-79.773,0	1/1:193:0,193:0:0:193:6924:-623.225,-58.0988,0	1/1:63:0,63:0:0:63:2233:-201.232,-18.9649,0	0/1:212:73,139:73:2616:139:4937:-380.662,0,-171.869	0/1:76:21,55:21:756:55:1964:-154.157,0,-45.4889	1/1:121:2,119:2:72:119:4255:-376.292,-29.5879,0	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:355:164,190:164:5854:190:6782:-503.526,0,-420.048	1/1:119:0,118:0:0:118:4214:-379.079,-35.5215,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	.:.:.:.:.:.:.:.	1/1:149:0,149:0:0:149:5328:-479.654,-44.8535,0	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	0/1:176:55,121:55:1968:121:4321:-336.083,0,-124.414	0/1:117:57,60:57:2036:60:2152:-158.724,0,-148.292	0/1:153:78,75:78:2769:75:2696:-196.826,0,-203.393	0/1:74:42,32:42:1477:32:1124:-79.189,0,-110.946	0/1:66:21,45:21:756:45:1612:-125.502,0,-48.4992	1/1:224:0,224:0:0:224:7986:-718.755,-67.4307,0	1/1:113:0,113:0:0:113:4014:-361.448,-34.0164,0	0/1:116:43,73:43:1536:73:2619:-201.037,0,-103.614	0/1:93:35,58:35:1247:58:2063:-157.945,0,-84.5383	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:135:42,93:42:1496:93:3321:-258.468,0,-94.2953	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:16:5,11:5:176:11:384:-30.0782,0,-11.3685	1/1:100:0,100:0:0:100:3580:-322.407,-30.103,0	1/1:196:1,195:1:36:195:6957:-621.969,-55.4036,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:200:0,199:0:0:199:7136:-641.936,-59.905,0	1/1:199:0,199:0:0:199:7095:-638.61,-59.905,0	1/1:107:0,107:0:0:107:3821:-344.086,-32.2102,0	1/1:95:0,95:0:0:95:3349:-301.624,-28.5979,0	1/1:192:0,192:0:0:192:6834:-615.13,-57.7978,0	1/1:166:1,165:1:36:165:5887:-526.344,-46.3727,0	1/1:119:0,119:0:0:119:4264:-383.938,-35.8226,0	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	1/1:99:0,99:0:0:99:3522:-317.189,-29.802,0	0/1:21:14,7:14:504:7:243:-15.8859,0,-39.3765	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:63:17,46:17:599:46:1628:-127.831,0,-35.2732	0/1:136:48,88:48:1715:88:3140:-241.886,0,-113.695	1/1:241:0,241:0:0:241:8597:-773.726,-72.5482,0	1/1:65:0,65:0:0:65:2327:-209.689,-19.567,0	1/1:122:0,122:0:0:122:4367:-393.18,-36.7257,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:154:0,154:0:0:154:5494:-494.585,-46.3586,0	1/1:123:0,123:0:0:123:4371:-393.561,-37.0267,0	1/1:251:0,251:0:0:251:8953:-805.751,-75.5585,0	1/1:102:1,101:1:36:101:3600:-320.609,-27.1068,0	1/1:167:0,167:0:0:167:5952:-535.785,-50.272,0	0/1:115:39,76:39:1362:76:2717:-209.994,0,-88.2584	1/1:262:3,259:3:108:259:9212:-819.067,-68.8839,0	0/1:35:16,19:16:576:19:684:-51.3543,0,-41.6389	1/1:72:0,72:0:0:72:2588:-233.167,-21.6742,0	1/1:78:0,78:0:0:78:2775:-249.991,-23.4803,0	1/1:117:0,117:0:0:117:4180:-376.383,-35.2205,0	0/1:163:78,85:78:2769:85:3055:-226.111,0,-200.383	0/1:125:91,34:91:3221:34:1209:-71.4854,0,-252.482	1/1:152:0,152:0:0:152:5431:-488.914,-45.7566,0	1/1:235:2,232:2:72:232:8281:-738.458,-63.9641,0
chr06	1915452	.	G	A	265496	PASS	AB=0.592146;ABP=290.342;AC=146;AF=0.793478;AN=184;AO=9578;CIGAR=1X;DP=11184;DPB=11184;DPRA=122.89;EPP=20740.6;EPPR=3486.05;GTI=4;LEN=1;MEANALT=1.02198;MQM=59.974;MQMR=60;NS=92;NUMALT=1;ODDS=2.28955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341708;QR=56931;RO=1604;RPL=5236;RPP=184.209;RPPR=6.39476;RPR=4342;RUN=1;SAF=5229;SAP=178.578;SAR=4349;SRF=827;SRP=6.39476;SRR=777;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:14,35:14:491:35:1240:-97.154,0,-29.7706	1/1:131:0,131:0:0:131:4678:-421.18,-39.4349,0	0/1:175:61,114:61:2179:114:4080:-314.706,0,-143.695	1/1:241:0,241:0:0:241:8619:-775.705,-72.5482,0	0/1:44:6,38:6:207:38:1364:-109.814,0,-5.72157	0/1:25:8,17:8:288:17:599:-46.7123,0,-18.7417	1/1:89:0,89:0:0:89:3178:-286.243,-26.7917,0	0/1:140:45,95:45:1616:95:3397:-263.799,0,-103.586	0/1:178:67,111:67:2353:111:3972:-304.087,0,-158.445	0/1:85:30,55:30:1076:55:1955:-150.636,0,-71.5653	0/1:132:55,77:55:1951:77:2740:-207.096,0,-136.129	1/1:244:0,244:0:0:244:8666:-779.937,-73.4513,0	0/1:145:78,67:78:2792:67:2351:-168.195,0,-207.871	0/1:155:78,76:78:2787:76:2706:-197.063,0,-204.352	1/1:168:0,168:0:0:168:6015:-541.454,-50.573,0	0/1:109:59,50:59:2099:50:1796:-129.11,0,-156.367	1/1:104:0,104:0:0:104:3728:-335.721,-31.3071,0	1/1:89:0,89:0:0:89:3179:-286.334,-26.7917,0	1/1:60:2,58:2:72:58:2073:-180.002,-11.2251,0	1/1:192:0,192:0:0:192:6839:-615.575,-57.7978,0	0/1:145:42,103:42:1476:103:3651:-285.145,0,-89.4824	1/1:94:0,94:0:0:94:3366:-303.156,-28.2968,0	0/1:86:42,44:42:1485:44:1564:-115.163,0,-108.054	0/1:49:16,33:16:559:33:1171:-90.9462,0,-35.8871	1/1:86:0,86:0:0:86:3080:-277.428,-25.8886,0	1/1:264:0,264:0:0:264:9425:-848.211,-79.4719,0	1/1:196:0,196:0:0:196:7016:-631.503,-59.0019,0	1/1:63:0,63:0:0:63:2243:-202.133,-18.9649,0	0/1:207:72,135:72:2556:135:4797:-369.574,0,-167.978	0/1:77:20,57:20:716:57:2042:-160.872,0,-41.5884	1/1:120:2,118:2:72:118:4227:-373.772,-29.2869,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:354:165,189:165:5833:189:6736:-499.749,0,-418.523	1/1:117:0,117:0:0:117:4185:-376.831,-35.2205,0	1/1:110:0,110:0:0:110:3939:-354.701,-33.1133,0	.:.:.:.:.:.:.:.	1/1:153:0,153:0:0:153:5469:-492.337,-46.0576,0	1/1:73:0,73:0:0:73:2611:-235.237,-21.9752,0	0/1:176:52,123:52:1847:123:4376:-340.975,0,-113.469	0/1:119:59,60:59:2085:60:2137:-156.771,0,-152.096	0/1:149:74,75:74:2611:75:2663:-195.061,0,-190.383	0/1:77:45,32:45:1598:32:1144:-80.0902,0,-120.929	0/1:88:30,58:30:1072:58:2080:-160.98,0,-70.3018	1/1:228:0,228:0:0:228:8160:-734.41,-68.6348,0	1/1:112:0,112:0:0:112:3996:-359.831,-33.7154,0	0/1:116:43,73:43:1527:73:2583:-197.798,0,-102.803	0/1:93:34,59:34:1211:59:2097:-161.002,0,-81.2997	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:122:0,122:0:0:122:4353:-391.944,-36.7257,0	1/1:63:0,63:0:0:63:2245:-202.313,-18.9649,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:139:44,95:44:1555:95:3392:-263.653,0,-98.3978	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	1/1:103:0,103:0:0:103:3688:-332.123,-31.0061,0	1/1:197:1,196:1:36:196:7000:-626.147,-55.7046,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:200:0,200:0:0:200:7121:-640.931,-60.206,0	1/1:200:0,200:0:0:200:7117:-640.589,-60.206,0	1/1:110:1,109:1:36:109:3873:-345.167,-29.515,0	1/1:96:0,96:0:0:96:3432:-309.094,-28.8989,0	1/1:190:0,190:0:0:190:6744:-607.035,-57.1957,0	1/1:165:1,164:1:36:164:5880:-525.711,-46.0717,0	1/1:124:0,124:0:0:124:4434:-399.23,-37.3277,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:97:0,97:0:0:97:3456:-311.25,-29.1999,0	0/1:20:14,6:14:496:6:212:-13.4042,0,-38.9537	1/1:90:0,90:0:0:90:3199:-288.134,-27.0927,0	0/1:132:38,94:38:1360:94:3349:-261.821,0,-82.9646	0/1:141:48,93:48:1720:93:3310:-255.674,0,-112.64	1/1:240:0,240:0:0:240:8564:-770.756,-72.2472,0	1/1:108:0,108:0:0:108:3859:-347.505,-32.5112,0	1/1:169:1,168:1:36:168:6028:-539.024,-47.2758,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:154:0,154:0:0:154:5509:-495.934,-46.3586,0	1/1:199:1,198:1:36:198:7100:-635.458,-56.3067,0	1/1:255:0,255:0:0:255:9083:-817.45,-76.7627,0	1/1:102:1,101:1:36:101:3585:-319.26,-27.1068,0	1/1:167:0,167:0:0:167:5929:-533.722,-50.272,0	0/1:113:38,75:38:1350:75:2685:-207.718,0,-87.7824	1/1:262:2,260:2:72:260:9241:-824.738,-72.0331,0	0/1:51:21,30:21:731:30:1080:-82.1607,0,-50.7579	1/1:137:0,137:0:0:137:4897:-440.88,-41.2411,0	1/1:158:0,158:0:0:158:5591:-503.314,-47.5627,0	1/1:115:1,114:1:36:114:4047:-360.821,-31.0202,0	0/1:166:82,84:82:2894:84:3012:-221.34,0,-210.724	0/1:124:91,33:91:3222:33:1184:-69.5406,0,-252.876	1/1:156:0,156:0:0:156:5569:-501.32,-46.9607,0	1/1:234:3,231:3:108:231:8235:-731.017,-60.3659,0
chr06	1915673	.	GATGT	AATGT,AATGC	167000	PASS	AB=0.475261,0.51969;ABP=18.8041,13.0154;AC=145,43;AF=0.771277,0.228723;AN=188;AO=6155,1565;CIGAR=1X4M,1X3M1X;DP=7751;DPB=7750.2;DPRA=84.2283,0.900824;EPP=13368.4,3401.36;EPPR=5.18177;GTI=2;LEN=1,5;MEANALT=1.83696,2.26415;MQM=59.463,59.0997;MQMR=60;NS=94;NUMALT=2;ODDS=0.580377;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=219101,55034;QR=36;RO=1;RPL=0,0;RPP=13368.4,3401.36;RPPR=5.18177;RPR=6155,1565;RUN=1,1;SAF=0,0;SAP=13368.4,3401.36;SAR=6155,1565;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,5,20:0:0:5,20:176,699:-71.4111,-57.1184,-55.6132,-14.6434,0,-8.62278	1/1:75:0,75,0:0:0:75,0:2657,0:-239.336,-22.5773,0,-239.336,-22.5773,-239.336	1/2:112:0,54,57:0:0:54,57:1916,2014:-319.881,-163.95,-147.694,-156.062,0,-138.903	1/1:152:0,152,0:0:0:152,0:5420,0:-487.717,-45.7566,0,-487.717,-45.7566,-487.717	1/2:54:0,35,19:0:0:35,19:1251,669:-156.754,-54.7517,-44.2157,-102.356,0,-96.6363	1/2:39:0,20,19:0:0:20,19:720,665:-113.162,-54.4081,-48.3875,-59.1082,0,-53.3886	1/1:79:0,79,0:0:0:79,0:2803,0:-252.368,-23.7814,0,-252.368,-23.7814,-252.368	1/2:120:0,58,61:0:0:58,61:2076,2119:-341.337,-172.093,-154.633,-169.307,0,-150.944	1/2:82:0,31,49:0:0:31,49:1080,1731:-228.581,-140.808,-131.476,-87.7895,0,-73.039	1/2:66:0,32,34:0:0:32,34:1148,1170:-188.982,-95.3508,-85.7178,-93.9827,0,-83.7477	1/2:50:0,23,27:0:0:23,27:828,943:-144.551,-76.9858,-70.0621,-67.9204,0,-59.7926	1/1:62:0,62,0:0:0:62,0:2192,0:-197.437,-18.6639,0,-197.437,-18.6639,-197.437	1/2:63:0,33,30:0:0:33,30:1180,1049:-181.816,-85.5987,-75.6647,-96.5705,0,-87.5396	1/2:87:0,42,45:0:0:42,45:1500,1579:-250.88,-128.854,-116.211,-122.379,0,-108.833	1/1:48:0,48,0:0:0:48,0:1702,0:-153.398,-14.4494,0,-153.398,-14.4494,-153.398	1/2:53:0,23,29:0:0:23,29:813,1037:-150.718,-84.5295,-77.6058,-66.1949,0,-57.465	1/1:61:0,61,0:0:0:61,0:2149,0:-193.64,-18.3628,0,-193.64,-18.3628,-193.64	1/1:51:0,51,0:0:0:51,0:1817,0:-163.751,-15.3525,0,-163.751,-15.3525,-163.751	1/1:18:0,16,1:0:0:16,1:564,31:-50.7018,-4.81648,0,-48.2274,-2.35402,-47.9263	1/1:134:0,133,1:0:0:133,1:4734,36:-425.814,-40.037,0,-422.877,-36.7397,-422.576	1/2:77:0,21,56:0:0:21,56:748,1982:-222.69,-161.722,-155.4,-61.3237,0,-44.466	1/1:84:0,84,0:0:0:84,0:2993,0:-269.593,-25.2865,0,-269.593,-25.2865,-269.593	1/2:43:0,20,23:0:0:20,23:720,814:-125.356,-66.6048,-60.5842,-59.1082,0,-52.1845	1/2:123:0,65,55:0:0:65,55:2311,1927:-344.644,-156.775,-137.208,-187.897,0,-171.341	1/1:47:0,47,0:0:0:47,0:1669,0:-150.407,-14.1484,0,-150.407,-14.1484,-150.407	1/1:241:0,240,1:0:0:240,1:8579,31:-771.497,-72.2472,0,-769.011,-69.4517,-768.71	1/1:173:0,173,0:0:0:173,0:6145,0:-553.05,-52.0782,0,-553.05,-52.0782,-553.05	1/1:29:0,29,0:0:0:29,0:1019,0:-91.7286,-8.72987,0,-91.7286,-8.72987,-91.7286	1/2:205:0,108,95:0:0:108,95:3843,3323:-583.532,-270.346,-237.835,-313.227,0,-284.629	1/2:218:0,86,131:0:0:86,131:3048,4583:-620.694,-372.715,-346.827,-247.973,0,-208.538	1/1:99:0,94,4:0:0:94,4:3372,144:-303.198,-28.2968,0,-291.675,-16.7312,-290.471	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:5:0,1,4:0:0:1,4:36,143:-14.9552,-12.0173,-11.7163,-3.29724,0,-2.09312	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:178:0,86,92:0:0:86,92:3051,3244:-512.966,-264.462,-238.574,-248.857,0,-221.162	1/1:170:0,170,0:0:0:170,0:6033,0:-542.69,-51.1751,0,-542.69,-51.1751,-542.69	1/1:38:0,37,1:0:0:37,1:1305,36:-117.357,-11.1381,0,-114.456,-7.88052,-114.155	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:157:0,157,0:0:0:157,0:5593,0:-503.444,-47.2617,0,-503.444,-47.2617,-503.444	1/1:30:0,30,0:0:0:30,0:1061,0:-95.7769,-9.0309,0,-95.7769,-9.0309,-95.7769	1/2:143:0,66,77:0:0:66,77:2342,2674:-408.492,-217.704,-197.836,-191.139,0,-167.959	1/2:62:0,29,33:0:0:29,33:1032,1158:-178.622,-94.5114,-85.7815,-84.4636,0,-74.5296	1/2:58:0,25,33:0:0:25,33:891,1158:-167.153,-94.5573,-87.0315,-72.9493,0,-63.0153	1/2:79:0,31,48:0:0:31,48:1088,1707:-227.861,-139.319,-129.987,-88.8945,0,-74.4451	1/2:126:0,70,55:0:0:70,55:2486,1920:-358.662,-156.166,-135.094,-202.622,0,-186.065	1/1:149:0,148,1:0:0:148,1:5276,36:-474.544,-44.5524,0,-471.62,-41.2704,-471.319	1/1:102:0,100,0:0:0:100,0:3584,0:-322.351,-30.103,0,-322.351,-30.103,-322.351	1/2:136:0,75,61:0:0:75,61:2692,2176:-397.295,-177.726,-155.149,-219.926,0,-201.563	1/2:113:0,60,53:0:0:60,53:2152,1883:-329.293,-153.775,-135.714,-175.874,0,-159.919	1/2:13:0,5,8:0:0:5,8:180,281:-37.9126,-23.2221,-21.717,-15.0469,0,-12.6387	1/1:143:0,143,0:0:0:143,0:5092,0:-458.298,-43.0473,0,-458.298,-43.0473,-458.298	1/1:62:0,59,0:0:0:59,0:2101,0:-188.997,-17.7608,0,-188.997,-17.7608,-188.997	1/2:6:0,3,3:0:0:3,3:108,108:-17.9274,-9.17208,-8.26899,-9.11407,0,-8.21098	1/2:123:0,60,61:0:0:60,61:2147,2163:-351.115,-176.148,-158.087,-174.989,0,-156.626	1/1:49:0,48,1:0:0:48,1:1705,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chr06	1915711	.	G	T	135243	PASS	AB=0.482851;ABP=10.6068;AC=144;AF=0.765957;AN=188;AO=6268;CIGAR=1X;DP=7824;DPB=7824;DPRA=64.4505;EPP=13613.8;EPPR=3370.96;GTI=3;LEN=1;MEANALT=1.03297;MQM=59.3499;MQMR=59.1148;NS=94;NUMALT=1;ODDS=0.38917;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224144;QR=55380;RO=1551;RPL=6268;RPP=13613.8;RPPR=3370.96;RPR=0;RUN=1;SAF=0;SAP=13613.8;SAR=6268;SRF=0;SRP=3370.96;SRR=1551;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:20,6:20:716:6:216:-11.925,0,-56.8168	1/1:77:0,77:0:0:77:2760:-248.602,-23.1793,0	0/1:111:57,54:57:2036:54:1936:-140.788,0,-149.835	1/1:155:0,155:0:0:155:5549:-499.151,-46.6597,0	0/1:56:18,38:18:648:38:1352:-105.12,0,-41.7267	0/1:39:18,21:18:636:21:752:-56.2661,0,-45.7763	1/1:79:0,79:0:0:79:2802:-252.306,-23.7814,0	0/1:120:62,58:62:2216:58:2080:-151.293,0,-162.983	0/1:83:51,32:51:1828:32:1148:-78.5727,0,-139.568	0/1:69:34,35:34:1216:35:1260:-92.8841,0,-88.9476	0/1:52:28,24:28:1000:24:864:-62.429,0,-73.4117	1/1:63:0,63:0:0:63:2260:-203.549,-18.9649,0	0/1:65:30,35:30:1067:35:1260:-94.1324,0,-76.6879	0/1:85:44,41:44:1580:41:1458:-105.664,0,-116.904	1/1:48:0,48:0:0:48:1720:-155.019,-14.4494,0	0/1:53:29,24:29:1040:24:864:-62.0831,0,-77.9149	1/1:62:0,62:0:0:62:2212:-199.308,-18.6639,0	1/1:52:0,52:0:0:52:1860:-167.621,-15.6536,0	1/1:18:0,18:0:0:18:648:-58.5096,-5.41854,0	1/1:134:1,133:1:36:133:4772:-425.915,-36.7397,0	0/1:77:55,22:55:1955:22:784:-47.7046,0,-152.93	1/1:87:0,87:0:0:87:3120:-280.861,-26.1896,0	0/1:43:23,20:23:828:20:720:-52.1845,0,-61.8444	0/1:123:55,68:55:1960:68:2407:-179.499,0,-139.593	1/1:47:0,47:0:0:47:1680:-151.375,-14.1484,0	1/1:245:0,245:0:0:245:8735:-785.681,-73.7524,0	1/1:174:0,174:0:0:174:6237:-561.301,-52.3792,0	1/1:28:0,28:0:0:28:1008:-90.6957,-8.42884,0	0/1:203:96,107:96:3433:107:3832:-283.951,0,-248	0/1:216:129,87:129:4604:87:3085:-212.459,0,-349.328	1/1:101:5,96:5:180:96:3426:-292.16,-14.0839,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:177:91,83:91:3243:83:2972:-214.845,0,-239.33	1/1:170:0,170:0:0:170:6104:-549.08,-51.1751,0	1/1:41:0,41:0:0:41:1476:-133.037,-12.3422,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:159:0,159:0:0:159:5669:-510.256,-47.8638,0	1/1:29:0,29:0:0:29:1044:-94.2524,-8.72987,0	0/1:145:75,69:75:2660:69:2449:-176.907,0,-195.922	0/1:64:32,32:32:1140:32:1152:-84.7105,0,-83.5647	0/1:58:33,25:33:1180:25:900:-63.8276,0,-89.0066	0/1:79:47,32:47:1672:32:1152:-80.2006,0,-126.974	0/1:126:56,70:56:2008:70:2520:-189.047,0,-141.721	1/1:150:1,149:1:36:149:5314:-474.723,-41.5715,0	1/1:105:0,105:0:0:105:3756:-338.124,-31.6082,0	0/1:135:60,75:60:2160:75:2657:-198.708,0,-154	0/1:113:52,61:52:1856:61:2174:-161.587,0,-133.279	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:146:0,146:0:0:146:5177:-465.943,-43.9504,0	1/1:64:0,64:0:0:64:2292:-206.509,-19.2659,0	0/1:6:3,3:3:108:3:108:-8.21098,0,-8.26899	0/1:121:61,59:61:2172:59:2105:-153.159,0,-159.142	1/1:51:0,51:0:0:51:1804:-162.594,-15.3525,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:18:8,10:8:284:10:356:-26.9627,0,-20.4766	1/1:70:0,70:0:0:70:2500:-225.224,-21.0721,0	1/1:125:0,125:0:0:125:4492:-404.283,-37.6288,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:329:0,329:0:0:329:11774:-1059.3,-99.0389,0	1/1:199:5,194:5:176:194:6955:-609.7,-43.72,0	1/1:82:0,82:0:0:82:2929:-263.806,-24.6845,0	1/1:95:0,95:0:0:95:3397:-305.412,-28.5979,0	1/1:128:0,128:0:0:128:4575:-411.381,-38.5318,0	1/1:80:0,80:0:0:80:2845:-255.011,-24.0824,0	1/1:19:0,19:0:0:19:680:-61.5067,-5.71957,0	1/1:45:0,45:0:0:45:1608:-144.937,-13.5464,0	1/1:112:0,112:0:0:112:4005:-360.61,-33.7154,0	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	1/1:82:0,82:0:0:82:2932:-262.641,-24.6845,0	0/1:60:27,33:27:968:33:1188:-88.6986,0,-69.3756	0/1:156:79,77:79:2812:77:2725:-198.431,0,-206.333	1/1:109:0,109:0:0:109:3897:-350.862,-32.8123,0	1/1:112:0,112:0:0:112:3994:-359.076,-33.7154,0	1/1:86:1,85:1:36:85:3029:-269.183,-22.2903,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.5957	1/1:98:1,97:1:36:97:3484:-310.025,-25.9027,0	1/1:76:0,76:0:0:76:2728:-245.709,-22.8783,0	1/1:87:0,87:0:0:87:3111:-280.143,-26.1896,0	1/1:103:0,103:0:0:103:3704:-333.197,-31.0061,0	1/1:63:0,63:0:0:63:2264:-203.538,-18.9649,0	0/1:62:25,37:25:900:37:1328:-101.144,0,-62.643	1/1:114:0,114:0:0:114:4066:-366.061,-34.3174,0	0/1:41:23,18:23:820:18:644:-45.948,0,-61.6206	1/1:57:0,57:0:0:57:2048:-184.502,-17.1587,0	1/1:56:0,56:0:0:56:2004:-180.376,-16.8577,0	1/1:32:0,32:0:0:32:1149:-103.58,-9.63296,0	0/1:87:49,38:49:1748:38:1353:-95.819,0,-131.346	0/1:53:32,21:32:1126:21:756:-52.4126,0,-85.6783	1/1:107:0,107:0:0:107:3836:-345.322,-32.2102,0	1/1:81:0,81:0:0:81:2900:-261.028,-24.3834,0
chr06	1915921	.	C	T	12435.1	PASS	AB=0.48906;ABP=4.62563;AC=40;AF=0.21978;AN=182;AO=771;CIGAR=1X;DP=4139;DPB=4139;DPRA=0.945425;EPP=1668.54;EPPR=7314.36;GTI=3;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=91;NUMALT=1;ODDS=1.98871;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27443;QR=119687;RO=3367;RPL=0;RPP=1677.22;RPPR=7314.36;RPR=771;RUN=1;SAF=1;SAP=1668.54;SAR=770;SRF=0;SRP=7314.36;SRR=3367;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:5,5:5:172:5:180:-13.5418,0,-12.8077	0/0:82:82,0:82:2924:0:0:0,-24.6845,-263.393	0/1:38:24,14:24:860:14:504:-34.259,0,-66.2827	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:20:9,11:9:320:11:392:-29.5995,0,-23.1218	0/1:25:11,14:11:392:14:504:-38.1723,0,-28.0943	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/1:43:26,17:26:932:17:604:-41.7463,0,-71.2546	0/1:42:20,22:20:716:22:769:-56.887,0,-52.1245	0/1:54:29,25:29:1044:25:885:-63.7118,0,-78.0192	0/1:25:15,10:15:527:10:360:-25.2186,0,-40.2344	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:30:13,17:13:468:17:608:-46.0211,0,-33.4287	0/1:40:21,19:21:748:19:676:-49.1268,0,-55.6041	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/1:25:14,11:14:472:11:377:-26.7322,0,-35.2743	0/0:34:34,0:34:1194:0:0:0,-10.235,-107.764	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:64:63,1:63:2237:1:36:0,-15.6676,-197.994	0/1:53:25,28:25:892:28:1000:-74.3608,0,-64.6451	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/1:47:17,30:17:599:30:1068:-82.2837,0,-40.0897	0/1:53:20,33:20:701:33:1165:-89.2004,0,-47.4571	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:134:133,1:133:4690:1:36:0,-36.7397,-418.664	0/0:89:89,0:89:3179:0:0:0,-26.7917,-286.334	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/1:105:43,62:43:1517:62:2200:-166.658,0,-105.213	0/1:94:58,36:58:2060:36:1280:-87.2059,0,-157.375	0/0:78:78,0:78:2744:0:0:0,-23.4803,-247.2	0/1:10:2,8:2:68:8:288:-23.2571,0,-3.44741	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	.:.:.:.:.:.:.:.	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:83:41,42:41:1464:42:1508:-111.029,0,-107.071	0/0:94:94,0:94:3360:0:0:0,-28.2968,-302.617	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	.:.:.:.:.:.:.:.	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:43:24,19:24:864:19:680:-48.5849,0,-65.1383	0/1:36:17,19:17:603:19:684:-51.0532,0,-43.7624	0/1:27:14,13:14:500:13:468:-34.3318,0,-37.2084	0/1:73:38,35:38:1352:35:1230:-89.0273,0,-100.005	0/1:53:34,19:34:1211:19:675:-45.1224,0,-93.3409	0/0:103:103,0:103:3661:0:0:0,-31.0061,-329.694	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/1:65:38,27:38:1351:27:951:-66.3359,0,-102.323	0/1:109:48,61:48:1715:61:2175:-163.204,0,-121.823	0/1:4:3,1:3:93:1:36:-2.39415,0,-7.47261	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:60:28,32:28:996:32:1136:-84.4871,0,-71.8931	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:6:4,2:4:131:2:72:-5.03054,0,-10.3073	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:45:45,0:45:1583:0:0:0,-13.5463,-142.757	.:.:.:.:.:.:.:.	0/0:126:126,0:126:4490:0:0:0,-37.9298,-404.27	0/0:91:91,0:91:3210:0:0:0,-27.3937,-289.123	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.904	0/0:50:49,0:49:1756:0:0:0,-14.7505,-157.964	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.573	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.573	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:42:42,0:42:1478:0:0:0,-12.6433,-133.313	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/1:30:13,17:13:456:17:608:-46.0211,0,-32.3423	0/1:80:52,28:52:1847:28:1000:-66.233,0,-142.427	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:14:11,3:11:384:3:108:-5.86075,0,-30.6803	0/0:81:81,0:81:2864:0:0:0,-24.3834,-257.997	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:96:95,1:95:3380:1:36:0,-25.3006,-300.816	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.597	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/1:51:24,27:24:851:27:960:-71.3637,0,-61.5569	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/1:16:6,10:6:212:10:356:-27.5648,0,-14.6083	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/1:36:18,18:18:648:18:644:-47.4535,0,-47.8148	0/1:32:15,17:15:531:17:612:-45.7805,0,-38.4889	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:43:42,1:42:1504:1:36:0,-9.34601,-132.056
chr06	1939384	.	T	C	9075.44	PASS	AB=0.463183;ABP=17.8805;AC=43;AF=0.228723;AN=188;AO=596;CIGAR=1X;DP=3491;DPB=3491;DPRA=0.797241;EPP=1297.21;EPPR=6289.42;GTI=4;LEN=1;MEANALT=1;MQM=59.3003;MQMR=59.9668;NS=94;NUMALT=1;ODDS=0.381472;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21168;QR=103009;RO=2895;RPL=596;RPP=1297.21;RPPR=6289.42;RPR=0;RUN=1;SAF=596;SAP=1297.21;SAR=0;SRF=2895;SRP=6289.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:8,10:8:276:10:360:-27.3093,0,-19.7567	0/0:52:52,0:52:1807:0:0:0,-15.6536,-162.906	0/1:41:23,18:23:820:18:631:-44.7653,0,-61.7803	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:25:12,13:12:424:13:453:-33.5574,0,-30.9707	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:56:44,12:44:1563:12:428:-21.9929,0,-124.103	0/1:33:17,16:17:604:16:561:-40.8751,0,-44.7566	0/1:13:5,8:5:180:8:269:-20.6227,0,-12.6387	0/1:36:16,20:16:568:20:720:-54.2779,0,-40.6066	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/1:34:20,14:20:708:14:489:-34.1039,0,-53.8106	0/1:38:19,19:19:672:19:684:-50.4384,0,-49.3677	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.427	0/1:27:15,12:15:521:12:432:-31.0888,0,-39.0885	0/0:54:54,0:54:1910:0:0:0,-16.2556,-172.106	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:35:35,0:35:1216:0:0:0,-10.536,-109.743	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/1:31:17,14:17:608:14:500:-35.4386,0,-45.7201	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/1:40:22,18:22:792:18:644:-46.2494,0,-59.5645	0/1:41:23,18:23:828:18:645:-46.0364,0,-62.5019	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:93:93,0:93:3327:0:0:0,-27.9958,-299.639	0/0:84:84,0:84:2995:0:0:0,-25.2865,-269.782	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:91:54,37:54:1908:37:1322:-91.809,0,-144.601	0/1:34:24,10:24:852:10:360:-22.5046,0,-66.7654	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	1/1:2:0,2:0:0:2:72:-6.83188,-0.60206,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:102:56,46:56:1991:46:1637:-116.695,0,-148.758	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:48:48,0:48:1700:0:0:0,-14.4494,-153.283	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.269	0/1:48:21,27:21:748:27:959:-72.176,0,-53.1959	0/1:38:16,22:16:576:22:779:-58.9654,0,-40.7358	0/1:23:16,7:16:563:7:252:-16.0735,0,-44.0755	0/1:34:17,17:17:608:17:608:-44.817,0,-44.817	0/1:33:24,9:24:860:9:324:-19.5685,0,-67.7872	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.491	0/0:55:55,0:55:1952:0:0:0,-16.5566,-175.928	0/1:47:21,26:21:752:26:917:-68.6902,0,-53.8578	0/1:56:36,20:36:1296:20:720:-48.2711,0,-100.086	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.403	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:23:8,15:8:288:15:536:-41.6419,0,-19.3437	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:14:9,5:9:316:5:180:-12.3376,0,-24.5644	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/1:4:1,3:1:32:3:108:-8.85684,0,-1.99519	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.976	0/0:62:61,1:61:2184:1:36:0,-15.0656,-193.228	0/0:28:28,0:28:973:0:0:0,-8.42884,-87.8801	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:53:50,3:50:1796:3:104:0,-6.25178,-152.22	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6187	0/0:62:62,0:62:2199:0:0:0,-18.6639,-198.175	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.942	0/1:14:8,6:8:280:6:216:-15.5761,0,-21.3249	0/0:77:77,0:77:2746:0:0:0,-23.1793,-247.381	0/0:13:12,1:12:417:1:32:0,-0.717708,-34.6645	0/1:57:27,30:27:972:30:1044:-77.1056,0,-70.6392	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:39:39,0:39:1371:0:0:0,-11.7402,-123.688	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:13:8,5:8:288:5:167:-11.4418,0,-22.354	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:81:81,0:81:2887:0:0:0,-24.3834,-260.067	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/1:36:18,18:18:648:18:632:-46.3412,0,-47.8148	0/0:71:69,2:69:2442:2:72:0,-14.5509,-213.213	0/1:17:7,10:7:248:10:347:-26.4461,0,-17.5467	0/0:47:46,1:46:1648:1:36:0,-10.5511,-144.994	0/0:44:44,0:44:1549:0:0:0,-13.2453,-139.7	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.976	0/1:62:29,33:29:1027:33:1188:-88.557,0,-74.0783	0/1:36:14,22:14:500:22:776:-59.3251,0,-34.4991	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6473	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.646
chr06	1992210	.	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chr06	2060043	.	G	T	10877.3	PASS	AB=0.330015;ABP=658.562;AC=42;AF=0.225806;AN=186;AO=871;CIGAR=1X;DP=8242;DPB=8242;DPRA=0.765792;EPP=1894.36;EPPR=7025.36;GTI=11;LEN=1;MEANALT=1;MQM=58.5132;MQMR=57.7163;NS=93;NUMALT=1;ODDS=1.80523;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31047;QR=263833;RO=7370;RPL=0;RPP=1894.36;RPPR=7025.36;RPR=871;RUN=1;SAF=871;SAP=1894.36;SAR=0;SRF=7370;SRP=16006.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:17,16:17:612:16:576:-42.2345,0,-45.4794	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.098	0/1:112:93,19:93:3317:19:684:-28.0812,0,-262.57	0/0:220:220,0:220:7893:0:0:0,-66.2266,-707.982	0/1:66:59,7:59:2116:7:252:-3.16098,0,-170.803	0/1:23:20,3:20:716:3:108:-3.01645,0,-57.8182	0/0:110:109,1:109:3881:1:36:0,-29.5167,-345.876	0/1:63:42,21:42:1508:21:752:-49.0335,0,-116.443	0/1:91:67,24:67:2412:24:829:-47.5228,0,-187.308	0/1:86:53,33:53:1908:33:1184:-80.7906,0,-145.582	0/1:56:28,28:28:1004:28:995:-72.9636,0,-73.461	0/0:129:129,0:129:4632:0:0:0,-38.8329,-414.326	0/1:49:34,15:34:1216:15:540:-34.1771,0,-94.5988	0/1:36:30,6:30:1061:6:210:-8.39181,0,-84.9577	0/0:77:77,0:77:2768:0:0:0,-23.1793,-248.702	0/1:42:29,13:29:1044:13:468:-29.8156,0,-81.3398	0/0:44:44,0:44:1565:0:0:0,-13.2453,-140.871	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.42	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.4981	0/0:151:151,0:151:5424:0:0:0,-45.4555,-487.419	0/1:86:68,18:68:2393:18:644:-32.3546,0,-189.735	0/0:135:135,0:135:4837:0:0:0,-40.639,-435.285	0/1:112:63,49:63:2256:49:1748:-123.85,0,-169.58	0/1:39:24,15:24:864:15:538:-36.8543,0,-66.0504	0/1:62:41,21:41:1468:21:748:-48.8582,0,-113.183	0/0:309:308,1:308:10966:1:36:0,-89.4204,-982.983	0/0:320:320,0:320:11455:0:0:0,-96.3296,-1028.68	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.7975	0/1:249:140,109:140:5010:109:3890:-275.215,0,-376.039	0/1:115:102,13:102:3660:13:463:-7.35173,0,-292.788	0/0:158:158,0:158:5653:0:0:0,-47.5627,-508.68	.:.:.:.:.:.:.:.	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.448	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5437	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:177:87,90:87:3128:90:3190:-233.842,0,-228.435	0/0:127:127,0:127:4545:0:0:0,-38.2308,-408.627	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.099	1/1:2:0,2:0:0:2:72:-6.8363,-0.60206,0	0/0:118:118,0:118:4229:0:0:0,-35.5215,-380.742	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.675	0/1:123:96,27:96:3428:27:949:-48.6922,0,-271.699	0/1:41:22,19:22:792:19:684:-49.5295,0,-59.2588	0/1:27:13,14:13:464:14:500:-37.1969,0,-33.8674	0/1:123:72,51:72:2584:51:1806:-125.47,0,-195.758	0/1:73:59,14:59:2092:14:504:-23.7119,0,-164.299	0/0:112:112,0:112:4009:0:0:0,-33.7154,-359.234	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.547	0/1:51:29,22:29:1044:22:788:-55.7161,0,-78.427	0/1:132:79,53:79:2840:53:1874:-129.031,0,-216.101	0/1:9:5,4:5:176:4:144:-10.6028,0,-13.4757	0/0:141:140,0:140:5021:0:0:0,-42.1442,-450.768	0/0:84:84,0:84:2984:0:0:0,-25.2865,-268.607	0/1:8:6,2:6:216:2:72:-4.42764,0,-16.6335	0/1:59:51,8:51:1832:8:288:-8.50664,0,-146.084	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.909	0/1:9:4,5:4:144:5:180:-13.8424,0,-10.6043	0/1:10:1,9:1:36:9:324:-26.4923,0,-0.578928	0/1:56:42,14:42:1508:14:504:-28.8389,0,-118.96	0/0:138:138,0:138:4960:0:0:0,-41.5421,-445.689	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.67996	0/0:183:183,0:183:6564:0:0:0,-55.0885,-590.516	0/0:156:155,1:155:5556:1:36:0,-43.5062,-495.761	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.9	0/0:86:86,0:86:3066:0:0:0,-25.8886,-275.931	0/0:125:123,2:123:4390:2:63:0,-31.6474,-388.549	0/0:124:124,0:124:4447:0:0:0,-37.3277,-400.396	0/0:45:45,0:45:1612:0:0:0,-13.5463,-144.676	0/0:61:61,0:61:2181:0:0:0,-18.3628,-195.91	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.364	0/1:11:5,6:5:180:6:216:-16.3916,0,-13.2407	0/0:232:232,0:232:8295:0:0:0,-69.839,-743.515	0/1:77:62,15:62:2209:15:532:-24.8557,0,-174.185	0/1:88:70,18:70:2486:18:648:-32.1593,0,-196.009	0/0:189:189,0:189:6758:0:0:0,-56.8947,-607.427	0/0:176:175,1:175:6272:1:36:0,-49.3834,-560.92	0/0:137:137,0:137:4905:0:0:0,-41.2411,-441.591	0/1:12:9,3:9:309:3:104:-6.08945,0,-24.5284	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.492	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.157	0/0:221:221,0:221:7910:0:0:0,-66.5276,-711.885	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.904	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.411	0/1:40:29,11:29:1044:11:396:-23.9307,0,-82.2229	0/0:128:127,1:127:4564:1:36:0,-34.9353,-406.99	0/1:24:20,4:20:720:4:140:-5.71846,0,-56.9721	0/0:77:77,0:77:2753:0:0:0,-23.1793,-247.974	0/0:103:103,0:103:3687:0:0:0,-31.0061,-331.023	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.887	0/1:63:47,16:47:1673:16:572:-32.7604,0,-131.881	0/1:76:31,45:31:1116:45:1616:-122.806,0,-77.8734	0/0:148:148,0:148:5293:0:0:0,-44.5524,-475.388	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.159
chr06	2060113	.	C	T	221178	PASS	AB=0.542035;ABP=77.6755;AC=144;AF=0.765957;AN=188;AO=10382;CIGAR=1X;DP=12621;DPB=12621;DPRA=0;EPP=22425.8;EPPR=4828.08;GTI=2;LEN=1;MEANALT=1.01064;MQM=59.9502;MQMR=59.9937;NS=94;NUMALT=1;ODDS=6.70881;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=366566;QR=80012;RO=2238;RPL=14;RPP=22425.8;RPPR=4828.08;RPR=10368;RUN=1;SAF=0;SAP=22547.2;SAR=10382;SRF=0;SRP=4862.77;SRR=2238;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:18,43:18:648:43:1502:-117.106,0,-40.2891	1/1:218:1,217:1:36:217:7677:-687.373,-62.0263,0	0/1:133:39,94:39:1404:94:3322:-258.971,0,-86.6223	1/1:368:0,368:0:0:368:13030:-1172.51,-110.779,0	0/1:112:35,77:35:1260:77:2694:-208.989,0,-79.9901	0/1:66:26,40:26:913:40:1418:-108.049,0,-62.616	1/1:157:0,157:0:0:157:5556:-500.169,-47.2617,0	0/1:174:83,91:83:2976:91:3206:-236.386,0,-215.685	0/1:121:69,52:69:2433:52:1860:-131.255,0,-182.798	0/1:142:73,69:73:2605:69:2452:-178.154,0,-191.95	0/1:65:33,32:33:1173:32:1144:-83.697,0,-86.3086	1/1:49:0,49:0:0:49:1732:-155.957,-14.7505,0	0/1:53:34,19:34:1186:19:684:-45.9357,0,-91.0862	0/1:77:43,34:43:1540:34:1224:-87.2877,0,-115.714	1/1:60:0,60:0:0:60:2130:-191.968,-18.0618,0	0/1:57:31,26:31:1116:26:936:-67.4008,0,-83.593	1/1:70:0,70:0:0:70:2503:-225.523,-21.0721,0	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	1/1:30:0,30:0:0:30:1065:-96.1606,-9.0309,0	1/1:308:1,307:1:36:307:10833:-971.291,-89.119,0	0/1:190:104,86:104:3702:86:3025:-215.279,0,-276.184	1/1:273:0,273:0:0:273:9599:-863.882,-82.1812,0	0/1:188:97,91:97:3465:91:3221:-233.52,0,-255.467	0/1:229:93,136:93:3328:136:4823:-365.294,0,-230.802	0/1:92:41,51:41:1468:51:1790:-133.684,0,-104.721	1/1:338:1,337:1:36:337:11961:-1072.76,-98.1499,0	1/1:223:0,223:0:0:223:7794:-701.413,-67.1297,0	1/1:44:0,44:0:0:44:1560:-140.679,-13.2453,0	0/1:455:188,267:188:6729:267:9402:-709.152,0,-468.714	0/1:229:135,93:135:4848:93:3292:-227.503,0,-367.477	1/1:127:0,127:0:0:127:4467:-402.203,-38.2308,0	0/1:19:5,14:5:176:14:496:-39.2547,0,-10.4654	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:25:8,17:8:288:17:593:-46.169,0,-18.7417	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:163:84,79:84:3020:79:2814:-204.431,0,-222.962	1/1:285:0,285:0:0:285:10098:-908.765,-85.7936,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:196:0,196:0:0:196:6937:-624.404,-59.0019,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:218:83,135:83:2957:135:4774:-364.195,0,-200.738	0/1:74:29,45:29:1021:45:1608:-122.734,0,-69.924	0/1:76:40,36:40:1440:36:1265:-91.2723,0,-107.019	0/1:146:66,80:66:2357:80:2848:-212.607,0,-168.437	0/1:169:78,91:78:2773:91:3220:-239.149,0,-198.936	1/1:278:0,278:0:0:278:9843:-885.811,-83.6863,0	1/1:215:0,215:0:0:215:7514:-676.314,-64.7215,0	0/1:218:87,131:87:3112:131:4566:-345.478,0,-214.683	0/1:256:91,165:91:3255:165:5784:-443.603,0,-216.107	0/1:27:16,11:16:572:11:388:-27.1296,0,-43.6856	1/1:184:0,184:0:0:184:6479:-583.204,-55.3895,0	1/1:51:0,51:0:0:51:1780:-160.483,-15.3525,0	0/1:45:17,28:17:608:28:981:-75.0547,0,-41.5057	0/1:192:81,111:81:2901:111:3901:-293.493,0,-203.526	1/1:104:0,104:0:0:104:3666:-330.145,-31.3071,0	0/1:20:11,9:11:392:9:320:-23.1218,0,-29.5995	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/1:118:52,66:52:1853:66:2306:-172.277,0,-131.522	1/1:74:0,74:0:0:74:2636:-237.485,-22.2762,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:417:0,417:0:0:417:14690:-1321.87,-125.53,0	1/1:344:5,339:5:180:339:11972:-1060.8,-87.0023,0	1/1:113:0,113:0:0:113:4002:-360.368,-34.0164,0	1/1:118:0,118:0:0:118:4120:-370.989,-35.5215,0	1/1:341:0,341:0:0:341:12140:-1092.46,-102.651,0	1/1:88:0,88:0:0:88:3117:-280.757,-26.4906,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:102:0,102:0:0:102:3565:-320.794,-30.7051,0	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	0/1:33:18,15:18:648:15:536:-38.6408,0,-48.7179	1/1:150:0,150:0:0:150:5236:-471.355,-45.1545,0	0/1:88:48,40:48:1720:40:1392:-99.0863,0,-128.595	0/1:207:104,103:104:3740:103:3656:-266.933,0,-274.486	1/1:286:0,286:0:0:286:10043:-903.83,-86.0946,0	1/1:110:0,110:0:0:110:3904:-351.557,-33.1133,0	1/1:179:2,177:2:72:177:6209:-552.06,-47.0476,0	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	1/1:225:0,225:0:0:225:7850:-706.548,-67.7318,0	1/1:309:0,309:0:0:309:10928:-983.074,-93.0183,0	1/1:370:0,370:0:0:370:12879:-1158.76,-111.381,0	1/1:86:0,86:0:0:86:3088:-278.145,-25.8886,0	1/1:74:0,74:0:0:74:2644:-238.207,-22.2762,0	0/1:98:38,60:38:1349:60:2117:-161.296,0,-92.2073	1/1:129:0,129:0:0:129:4620:-415.834,-38.8329,0	0/1:30:12,18:12:432:18:648:-49.621,0,-30.1903	1/1:74:0,74:0:0:74:2632:-237.128,-22.2762,0	1/1:63:1,62:1:36:62:2207:-195.287,-15.3666,0	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	0/1:68:32,36:32:1148:36:1276:-94.673,0,-83.1598	0/1:57:41,16:41:1476:16:576:-35.0163,0,-115.977	1/1:164:0,164:0:0:164:5800:-522.112,-49.3689,0	1/1:78:0,78:0:0:78:2772:-249.705,-23.4803,0
chr06	2177650	.	C	A	141218	PASS	AB=0.429405;ABP=396.367;AC=144;AF=0.765957;AN=188;AO=9964;CIGAR=1X;DP=15167;DPB=15167;DPRA=0;EPP=21639.6;EPPR=11286;GTI=6;LEN=1;MEANALT=1.07447;MQM=30.2207;MQMR=24.8179;NS=94;NUMALT=1;ODDS=3.62132;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=355642;QR=185664;RO=5196;RPL=0;RPP=21639.6;RPPR=11286;RPR=9964;RUN=1;SAF=0;SAP=21639.6;SAR=9964;SRF=0;SRP=11286;SRR=5196;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:2,6:2:72:6:197:-12.6575,0,-1.73975	1/1:125:0,124:0:0:124:4428:-323.75,-37.3277,0	0/1:73:38,35:38:1364:35:1252:-69.6148,0,-52.8849	1/1:101:0,101:0:0:101:3594:-262.222,-30.404,0	0/1:29:11,17:11:396:17:593:-35.106,0,-15.0206	0/1:45:17,28:17:608:28:1008:-60.1755,0,-20.0522	1/1:123:0,123:0:0:123:4398:-320.041,-37.0267,0	0/1:103:51,52:51:1832:52:1868:-105.17,0,-69.3098	0/1:41:17,24:17:604:24:864:-50.7183,0,-21.2343	0/1:65:34,31:34:1216:31:1112:-61.5488,0,-61.3744	0/1:348:182,166:182:6508:166:5916:-327.226,0,-326.808	1/1:67:0,67:0:0:67:2395:-174.848,-20.169,0	0/1:65:24,41:24:860:41:1460:-88.0019,0,-27.7855	0/1:75:40,35:40:1432:35:1256:-68.9725,0,-62.6964	1/1:75:0,75:0:0:75:2679:-194.979,-22.5773,0	0/1:83:40,43:40:1424:43:1540:-87.3605,0,-60.2327	1/1:52:0,52:0:0:52:1860:-136.446,-15.6536,0	1/1:64:0,64:0:0:64:2287:-166.389,-19.2659,0	1/1:191:0,191:0:0:191:6851:-500.309,-57.4967,0	1/1:85:0,85:0:0:85:3018:-220.433,-25.5876,0	0/1:87:51,36:51:1771:36:1288:-67.9954,0,-81.381	1/1:78:0,78:0:0:78:2792:-214.198,-23.4803,0	0/1:38:20,18:20:720:18:640:-34.9285,0,-36.5005	0/1:44:9,35:9:324:35:1243:-77.9322,0,-6.21763	0/1:49:25,24:25:900:24:860:-48.1355,0,-38.7192	1/1:175:0,175:0:0:175:6229:-474.745,-52.6803,0	1/1:148:0,148:0:0:148:5274:-384.217,-44.5524,0	1/1:37:0,37:0:0:37:1320:-96.5207,-11.1381,0	0/1:143:67,76:67:2389:76:2708:-163.635,0,-125.656	0/1:72:40,32:40:1428:32:1140:-62.1727,0,-63.566	1/1:65:0,65:0:0:65:2302:-168.355,-19.567,0	0/1:584:353,231:353:12641:231:8272:-426.956,0,-576.911	1/1:447:0,447:0:0:447:15955:-1162.67,-134.56,0	0/1:446:352,94:352:12562:94:3345:-110.385,0,-556.725	0/1:760:494,266:494:17602:266:9481:-463.548,0,-741.174	1/1:327:0,327:0:0:327:11664:-852.212,-98.4368,0	0/1:174:92,82:92:3292:82:2940:-169.091,0,-180.894	1/1:140:0,140:0:0:140:5001:-363.244,-42.1442,0	1/1:431:0,430:0:0:430:15391:-1120.86,-129.443,0	0/1:308:205,103:205:7314:103:3673:-175.584,0,-343.133	1/1:73:0,73:0:0:73:2628:-190.928,-21.9752,0	1/1:230:0,230:0:0:230:8247:-599.886,-69.2369,0	0/1:46:15,31:15:536:31:1112:-67.3261,0,-18.3989	0/1:53:27,26:27:968:26:915:-51.606,0,-48.61	0/1:66:35,31:35:1256:31:1092:-60.8564,0,-63.5183	0/1:101:39,62:39:1404:62:2224:-138.139,0,-68.7424	0/1:69:26,43:26:936:43:1502:-90.0993,0,-30.533	1/1:104:0,104:0:0:104:3700:-269.764,-31.3071,0	1/1:80:0,80:0:0:80:2872:-209.079,-24.0824,0	0/1:62:34,28:34:1207:28:981:-53.6927,0,-61.8041	0/1:101:54,47:54:1944:47:1688:-98.8312,0,-106.827	0/1:462:314,148:314:11210:148:5294:-246.976,0,-603.681	1/1:71:0,71:0:0:71:2544:-185.796,-21.3731,0	1/1:31:0,31:0:0:31:1104:-84.9688,-9.33193,0	0/1:583:289,294:289:10331:294:10460:-589.607,0,-391.581	0/1:74:40,34:40:1436:34:1203:-66.2553,0,-63.031	1/1:17:0,17:0:0:17:593:-43.8248,-5.11751,0	0/1:451:291,160:291:10397:160:5686:-293.18,0,-600.255	0/1:656:327,329:327:11688:329:11729:-697.702,0,-630.468	0/1:59:39,20:39:1392:20:698:-33.3733,0,-65.6868	1/1:97:2,95:2:72:95:3397:-242.849,-24.1676,0	0/1:318:207,110:207:7374:110:3923:-191.491,0,-394.168	1/1:122:0,122:0:0:122:4315:-331.243,-36.7257,0	1/1:199:1,198:1:36:198:7065:-513.219,-57.2564,0	1/1:45:0,45:0:0:45:1612:-117.497,-13.5464,0	1/1:34:0,34:0:0:34:1201:-88.1361,-10.235,0	1/1:92:2,90:2:72:90:3209:-229.697,-22.6624,0	1/1:120:1,119:1:36:119:4257:-307.298,-33.475,0	1/1:288:0,287:0:0:287:10213:-746.629,-86.3956,0	1/1:79:0,79:0:0:79:2840:-206.696,-23.7814,0	1/1:77:0,77:0:0:77:2754:-210.256,-23.1793,0	0/1:492:251,241:251:8967:241:8635:-480.227,0,-447.102	1/1:148:1,147:1:36:147:5267:-379.401,-41.1648,0	0/1:43:20,23:20:720:23:820:-47.4329,0,-26.5707	0/1:128:59,69:59:2104:69:2467:-141.608,0,-87.0573	1/1:83:0,83:0:0:83:2972:-216.076,-24.9855,0	1/1:63:0,63:0:0:63:2260:-164.863,-18.9649,0	1/1:49:0,49:0:0:49:1756:-128.358,-14.7505,0	0/1:697:394,303:394:14100:303:10788:-575.543,0,-563.737	1/1:64:1,63:1:36:63:2245:-161.453,-16.8924,0	1/1:38:0,38:0:0:38:1368:-99.5648,-11.4391,0	1/1:217:5,211:5:180:211:7532:-537.819,-53.5516,0	1/1:114:0,114:0:0:114:4084:-298.447,-34.3174,0	1/1:61:0,61:0:0:61:2180:-159.237,-18.3628,0	0/1:72:41,31:41:1445:31:1116:-59.5999,0,-74.5595	1/1:137:0,137:0:0:137:4887:-356.998,-41.2411,0	0/1:52:22,30:22:788:30:1076:-62.9779,0,-27.7692	1/1:78:0,78:0:0:78:2786:-203.174,-23.4803,0	1/1:62:0,62:0:0:62:2198:-160.897,-18.6639,0	1/1:375:0,374:0:0:374:13378:-975.056,-112.585,0	0/1:814:463,351:463:16582:351:12496:-666.642,0,-743.232	0/1:48:32,16:32:1152:16:568:-27.4321,0,-62.0951	1/1:12:0,12:0:0:12:432:-31.6401,-3.61236,0	1/1:89:0,89:0:0:89:3179:-231.878,-26.7917,0
chr06	2177682	.	GTCC	ATCC,ATCT	191702	PASS	AB=0.427183,0.571943;ABP=424.872,414.813;AC=144,44;AF=0.765957,0.234043;AN=188;AO=9972,5252;CIGAR=1X3M,1X2M1X;DP=15235;DPB=15235;DPRA=0,1.74297;EPP=21656.9,11407.6;EPPR=11.6962;GTI=6;LEN=1,4;MEANALT=1.60638,2.11765;MQM=30.2215,24.7987;MQMR=39;NS=94;NUMALT=2;ODDS=2.57055;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=300786,186844;QR=144;RO=4;RPL=9972,5252;RPP=21656.9,11407.6;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=21656.9,11407.6;SAR=9972,5252;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:7:0,5,2:0:0:5,2:150,72:-14.224,-3.54593,-2.04078,-10.9111,0,-10.3091	1/1:126:0,126,0:0:0:126,0:3791,0:-307.348,-37.9298,0,-307.348,-37.9298,-307.348	1/2:72:0,34,38:0:0:34,38:1021,1354:-135.826,-63.351,-53.116,-72.7203,0,-61.2811	1/1:99:1,98,0:1:36:98,0:2939,0:-235.345,-26.8992,0,-235.646,-29.5009,-237.958	1/2:29:0,18,11:0:0:18,11:540,395:-58.7465,-20.418,-14.9994,-38.5782,0,-35.2669	1/2:45:0,28,17:0:0:28,17:844,611:-88.4827,-28.4992,-20.0703,-60.2219,0,-55.1044	1/1:121:0,121,0:0:0:121,0:3607,0:-292.478,-36.4246,0,-292.478,-36.4246,-292.478	1/2:105:0,54,51:0:0:54,51:1615,1818:-199.438,-84.7963,-68.5406,-114.885,0,-99.5321	1/2:42:0,24,18:0:0:24,18:721,636:-81.2172,-30.0193,-22.7946,-51.438,0,-46.0195	1/2:65:0,31,34:0:0:31,34:929,1209:-136.471,-70.5825,-61.2506,-66.155,0,-55.92	1/2:351:0,166,185:0:0:166,185:4981,6567:-735.333,-381.952,-331.981,-353.648,0,-297.957	1/1:68:0,68,0:0:0:68,0:2039,0:-165.37,-20.47,0,-165.37,-20.47,-165.37	1/2:66:0,41,25:0:0:41,25:1239,899:-129.91,-41.8096,-29.4674,-88.3396,0,-80.8138	1/2:73:0,34,39:0:0:34,39:1019,1363:-142.957,-70.6698,-60.4348,-72.5398,0,-60.7996	1/1:80:0,80,0:0:0:80,0:2387,0:-193.441,-24.0824,0,-193.441,-24.0824,-193.441	1/2:86:0,44,42:0:0:44,42:1319,1498:-170.253,-76.6826,-63.4373,-93.8222,0,-81.179	1/1:54:0,54,0:0:0:54,0:1620,0:-131.692,-16.2556,0,-131.692,-16.2556,-131.692	1/1:63:0,63,0:0:0:63,0:1882,0:-152.594,-18.9649,0,-152.594,-18.9649,-152.594	1/1:191:2,189,0:2:72:189,0:5676,0:-453.253,-50.8068,0,-453.855,-56.8947,-459.591	1/1:87:0,87,0:0:0:87,0:2604,0:-211.189,-26.1896,0,-211.189,-26.1896,-211.189	1/2:89:0,36,53:0:0:36,53:1078,1887:-173.54,-96.9779,-86.1408,-76.8185,0,-60.8639	1/1:75:0,75,0:0:0:75,0:2399,0:-195.932,-22.5773,0,-195.932,-22.5773,-195.932	1/2:38:0,18,20:0:0:18,20:531,709:-79.2338,-41.7337,-36.3151,-37.7646,0,-31.744	1/2:45:0,36,9:0:0:36,9:1071,324:-92.8096,-16.7537,-5.9166,-76.2994,0,-73.5902	1/2:50:0,25,25:0:0:25,25:750,897:-99.1487,-45.926,-38.4003,-53.4759,0,-45.9501	1/1:174:0,174,0:0:0:174,0:5502,0:-448.593,-52.3792,0,-448.593,-52.3792,-448.593	1/1:142:0,142,0:0:0:142,0:4253,0:-344.596,-42.7463,0,-344.596,-42.7463,-344.596	1/1:37:0,37,0:0:0:37,0:1108,0:-89.9724,-11.1381,0,-89.9724,-11.1381,-89.9724	1/2:143:0,75,68:0:0:75,68:2375,2408:-321.499,-150.389,-127.812,-171.392,0,-150.922	1/2:73:0,33,40:0:0:33,40:995,1430:-144.118,-73.2206,-63.2866,-71.1537,0,-59.1125	1/1:66:0,66,0:0:0:66,0:1943,0:-158.155,-19.868,0,-158.155,-19.868,-158.155	1/2:583:0,228,355:0:0:228,355:6827,12636:-1133.76,-649.229,-580.594,-484.787,0,-377.922	1/1:449:0,449,0:0:0:449,0:13466,0:-1090.88,-135.162,0,-1090.88,-135.162,-1090.88	1/2:448:0,92,356:0:0:92,356:2755,12640:-786.845,-591.262,-563.567,-195.842,0,-88.6755	1/2:773:0,268,504:0:0:268,504:8028,17945:-1407.39,-837.325,-756.649,-570.143,0,-418.424	1/1:324:0,323,1:0:0:323,1:9671,36:-783.678,-97.2327,0,-782.014,-95.3506,-781.713	1/2:175:0,83,92:0:0:83,92:2594,3283:-391.591,-205.344,-180.358,-186.529,0,-158.834	1/1:144:0,144,0:0:0:144,0:4300,0:-348.286,-43.3483,0,-348.286,-43.3483,-348.286	1/1:435:0,435,0:0:0:435,0:13027,0:-1055.93,-130.948,0,-1055.93,-130.948,-1055.93	1/2:320:0,112,208:0:0:112,208:3345,7370:-616.97,-379.332,-345.617,-237.895,0,-175.281	1/1:70:0,70,0:0:0:70,0:2090,0:-169.642,-21.0721,0,-169.642,-21.0721,-169.642	1/1:231:0,231,0:0:0:231,0:6929,0:-561.342,-69.5379,0,-561.342,-69.5379,-561.342	1/2:45:0,30,15:0:0:30,15:900,526:-91.4327,-27.5628,-18.5319,-64.1171,0,-59.6016	1/2:54:0,27,27:0:0:27,27:801,967:-113.318,-56.4397,-48.3119,-57.1447,0,-49.0169	1/2:67:0,32,35:0:0:32,35:958,1254:-140.837,-72.7987,-63.1658,-68.3055,0,-57.7694	1/2:101:0,62,39:0:0:62,39:1938,1392:-226.592,-87.1544,-68.4905,-139.719,0,-127.979	1/2:68:0,42,26:0:0:42,26:1265,932:-133.33,-43.4619,-30.8186,-90.107,0,-82.2802	1/1:99:0,99,0:0:0:99,0:2951,0:-239.282,-29.802,0,-239.282,-29.802,-239.282	1/1:82:0,82,0:0:0:82,0:2444,0:-198.254,-24.6845,0,-198.254,-24.6845,-198.254	1/2:62:0,27,35:0:0:27,35:810,1246:-129.91,-72.4446,-64.3167,-57.7324,0,-47.1963	1/2:103:0,49,54:0:0:49,54:1564,1929:-233.413,-120.669,-105.919,-113.029,0,-96.7738	1/2:463:0,147,315:0:0:147,315:4399,11197:-962.256,-650.056,-605.804,-312.207,0,-217.383	1/1:73:0,73,0:0:0:73,0:2195,0:-178.057,-21.9752,0,-178.057,-21.9752,-178.057	1/1:28:0,28,0:0:0:28,0:894,0:-73.1668,-8.42884,0,-73.1668,-8.42884,-73.1668	1/2:589:0,297,289:0:0:297,289:8906,10230:-1111.46,-479.37,-389.964,-632.117,0,-545.119	1/2:75:0,35,40:0:0:35,40:1051,1407:-147.594,-72.9999,-62.4639,-74.8485,0,-62.8073	1/1:17:0,17,0:0:0:17,0:501,0:-40.9784,-5.11751,0,-40.9784,-5.11751,-40.9784	1/2:460:0,164,296:0:0:164,296:5136,10541:-1027.79,-659.316,-609.947,-368.758,0,-279.653	1/2:660:0,328,332:0:0:328,332:10419,11835:-1489.01,-738.163,-639.425,-751.133,0,-651.191	1/2:58:0,19,39:0:0:19,39:563,1389:-111.466,-71.6491,-65.9295,-40.0736,0,-28.3334	1/1:94:0,92,2:0:0:92,2:2764,72:-224.042,-27.6948,0,-219.876,-23.2645,-219.274	1/2:320:0,111,209:0:0:111,209:3337,7441:-669.436,-432.386,-398.972,-237.318,0,-174.403	1/1:120:0,120,0:0:0:120,0:3825,0:-312.043,-36.1236,0,-312.043,-36.1236,-312.043	1/1:200:0,199,1:0:0:199,1:5961,36:-483.027,-59.905,0,-480.945,-57.5574,-480.644	1/1:45:0,45,0:0:0:45,0:1347,0:-109.316,-13.5464,0,-109.316,-13.5464,-109.316	1/1:31:0,31,0:0:0:31,0:930,0:-75.5772,-9.33193,0,-75.5772,-9.33193,-75.5772	1/1:91:0,89,2:0:0:89,2:2678,72:-217.114,-26.7917,0,-212.949,-22.3614,-212.347	1/1:120:0,119,1:0:0:119,1:3561,36:-288.502,-35.8226,0,-286.42,-33.475,-286.118	1/1:285:0,285,0:0:0:285,0:8557,0:-693.241,-85.7936,0,-693.241,-85.7936,-693.241	1/1:79:0,79,0:0:0:79,0:2373,0:-192.452,-23.7814,0,-192.452,-23.7814,-192.452	1/1:76:0,76,0:0:0:76,0:2417,0:-197.239,-22.8783,0,-197.239,-22.8783,-197.239	1/2:497:0,242,255:0:0:242,255:7237,9061:-1040.27,-526.85,-454.001,-513.683,0,-436.92	1/1:149:0,149,0:0:0:149,0:4467,0:-362.042,-44.8535,0,-362.042,-44.8535,-362.042	1/2:45:0,23,22:0:0:23,22:693,784:-86.0177,-36.7712,-29.8475,-49.4906,0,-42.8679	1/2:131:0,70,60:0:0:70,60:2103,2137:-258.736,-109.47,-88.3982,-149.325,0,-131.264	1/1:86:0,86,0:0:0:86,0:2554,0:-207.295,-25.8886,0,-207.295,-25.8886,-207.295	1/1:64:0,64,0:0:0:64,0:1915,0:-155.517,-19.2659,0,-155.517,-19.2659,-155.517	1/1:49:0,49,0:0:0:49,0:1475,0:-119.755,-14.7505,0,-119.755,-14.7505,-119.755	1/2:694:0,296,398:0:0:296,398:8834,14178:-1287.74,-661.22,-572.115,-626.766,0,-506.956	1/1:64:0,63,1:0:0:63,1:1889,36:-152.986,-18.9649,0,-151.151,-16.8924,-150.85	1/1:39:0,39,0:0:0:39,0:1165,0:-94.5605,-11.7402,0,-94.5605,-11.7402,-94.5605	1/1:215:0,210,5:0:0:210,5:6287,179:-509.439,-63.2163,0,-499.449,-52.97,-497.944	1/1:116:0,116,0:0:0:116,0:3489,0:-283.089,-34.9195,0,-283.089,-34.9195,-283.089	1/1:60:0,60,0:0:0:60,0:1791,0:-145.44,-18.0618,0,-145.44,-18.0618,-145.44	1/2:72:0,31,41:0:0:31,41:930,1466:-150.49,-84.511,-75.1791,-66.2453,0,-53.9031	1/1:141:0,141,0:0:0:141,0:4231,0:-342.887,-42.4452,0,-342.887,-42.4452,-342.887	1/2:55:0,32,23:0:0:32,23:961,827:-106.706,-38.482,-28.849,-68.4638,0,-61.5401	1/1:79:0,79,0:0:0:79,0:2369,0:-192.093,-23.7814,0,-192.093,-23.7814,-192.093	1/1:61:0,61,0:0:0:61,0:1832,0:-148.636,-18.3628,0,-148.636,-18.3628,-148.636	1/1:374:0,374,0:0:0:374,0:11226,0:-909.72,-112.585,0,-909.72,-112.585,-909.72	1/2:814:1,347,465:1:36:347,465:10363,16537:-1581.44,-846.727,-745.078,-732.172,0,-595.001	1/2:49:0,17,32:0:0:17,32:512,1150:-103.251,-66.8892,-61.7717,-36.6311,0,-26.9981	1/1:12:0,12,0:0:0:12,0:360,0:-29.4211,-3.61236,0,-29.4211,-3.61236,-29.4211	1/1:90:0,90,0:0:0:90,0:2698,0:-218.724,-27.0927,0,-218.724,-27.0927,-218.724
chr06	2177781	.	C	T	98708	PASS	AB=0.481047;ABP=10.9944;AC=141;AF=0.766304;AN=184;AO=4617;CIGAR=1X;DP=5958;DPB=5958;DPRA=33.0778;EPP=10028.7;EPPR=2897.61;GTI=0;LEN=1;MEANALT=1;MQM=59.8339;MQMR=59.915;NS=92;NUMALT=1;ODDS=2.90574;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165426;QR=47834;RO=1341;RPL=4617;RPP=10028.7;RPPR=2897.61;RPR=0;RUN=1;SAF=0;SAP=10028.7;SAR=4617;SRF=0;SRP=2914.95;SRR=1341;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:16,13:16:576:13:464:-33.1379,0,-43.4451	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:145:71,74:71:2540:74:2656:-195.63,0,-185.165	1/1:117:0,117:0:0:117:4204:-378.141,-35.2205,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:28:11,17:11:392:17:612:-46.5546,0,-27.1912	1/1:48:0,48:0:0:48:1716:-154.408,-14.4494,0	0/1:87:34,53:34:1184:53:1904:-145.448,0,-80.6723	0/1:108:54,54:54:1932:54:1932:-141.641,0,-140.541	0/1:66:35,31:35:1244:31:1116:-80.8837,0,-92.3967	0/1:29:14,15:14:492:15:536:-39.8449,0,-35.8825	1/1:97:2,95:2:72:95:3396:-299.018,-22.3632,0	0/1:121:71,50:71:2540:50:1800:-125.429,0,-191.999	0/1:36:21,15:21:752:15:540:-38.0995,0,-57.1692	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	0/1:50:29,21:29:1044:21:756:-53.3157,0,-79.2233	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:21:1,20:1:36:20:716:-61.1694,-2.72336,0	1/1:124:1,123:1:36:123:4404:-392.921,-33.7294,0	0/1:139:89,50:89:3188:50:1788:-119.272,0,-245.3	1/1:65:0,65:0:0:65:2324:-209.414,-19.567,0	0/1:85:45,40:45:1604:40:1427:-103.139,0,-119.063	0/1:38:27,11:27:968:11:396:-24.5436,0,-75.9982	0/1:33:17,16:17:608:16:572:-41.8794,0,-45.118	1/1:162:0,162:0:0:162:5793:-521.404,-48.7669,0	1/1:137:0,137:0:0:137:4924:-443.286,-41.2411,0	1/1:37:0,37:0:0:37:1324:-119.125,-11.1381,0	0/1:197:86,111:86:3069:111:3988:-298.786,0,-217.135	0/1:23:8,15:8:288:15:540:-42.0128,0,-19.3437	1/1:69:0,69:0:0:69:2484:-223.812,-20.7711,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:175:89,86:89:3166:86:3084:-225.107,0,-232.485	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:29:0,29:0:0:29:1034:-93.3712,-8.72987,0	.:.:.:.:.:.:.:.	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:22:0,22:0:0:22:783:-70.7929,-6.62266,0	0/1:124:71,53:71:2519:53:1882:-132.329,0,-189.635	0/1:51:23,28:23:820:28:1004:-75.2383,0,-58.77	0/1:72:41,31:41:1449:31:1104:-77.9959,0,-108.659	0/1:73:27,46:27:968:46:1644:-126.273,0,-65.4622	0/1:88:58,30:58:2084:30:1076:-70.6622,0,-161.339	1/1:121:0,121:0:0:121:4327:-389.606,-36.4246,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:79:37,42:37:1328:42:1508:-112.233,0,-96.0409	0/1:56:32,24:32:1148:24:860:-60.8642,0,-86.7722	0/1:12:3,9:3:108:9:324:-25.8911,0,-6.46281	1/1:67:0,67:0:0:67:2412:-217.331,-20.169,0	1/1:39:0,39:0:0:39:1400:-126.254,-11.7402,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:87:53,34:53:1891:34:1220:-83.9172,0,-144.278	1/1:28:0,28:0:0:28:1008:-90.9064,-8.42884,0	0/1:9:7,2:7:252:2:68:-3.74844,0,-20.3197	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:55:29,26:29:1027:26:929:-67.2838,0,-76.1855	1/1:85:1,84:1:36:84:3016:-268.072,-21.9893,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:139:0,139:0:0:139:4971:-447.405,-41.8432,0	1/1:84:0,84:0:0:84:3001:-270.32,-25.2865,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:104:2,102:2:68:102:3636:-320.551,-24.8494,0	1/1:85:0,85:0:0:85:3048:-274.526,-25.5876,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:28:0,28:0:0:28:1000:-90.2977,-8.42884,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:15:6,9:6:212:9:324:-24.9904,0,-14.908	1/1:36:0,36:0:0:36:1284:-115.818,-10.8371,0	0/1:88:42,46:42:1500:46:1652:-122.478,0,-108.803	0/1:101:52,49:52:1851:49:1733:-125.849,0,-136.465	1/1:100:0,100:0:0:100:3596:-323.845,-30.103,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:94:0,94:0:0:94:3372:-303.624,-28.2968,0	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	1/1:83:1,82:1:36:82:2944:-261.572,-21.3872,0	1/1:90:0,90:0:0:90:3211:-289.168,-27.0927,0	1/1:192:0,192:0:0:192:6876:-618.769,-57.7978,0	1/1:50:0,50:0:0:50:1784:-160.841,-15.0515,0	1/1:85:0,85:0:0:85:3048:-274.534,-25.5876,0	0/1:65:33,32:33:1184:32:1152:-84.4232,0,-87.3014	1/1:115:1,114:1:36:114:4044:-360.547,-31.0202,0	0/1:31:15,16:15:532:16:572:-42.4815,0,-38.8812	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:54:21,33:21:748:33:1184:-90.6127,0,-51.3897	0/1:62:39,23:39:1374:23:828:-56.1803,0,-105.293	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:106:0,106:0:0:106:3811:-342.959,-31.9092,0
chr06	2178147	.	G	A	171651	PASS	AB=0.777758;ABP=7426.5;AC=104;AF=0.553191;AN=188;AO=9868;CIGAR=1X;DP=12430;DPB=12430;DPRA=66.8172;EPP=20665;EPPR=1099.15;GTI=26;LEN=1;MEANALT=1.01075;MQM=52.5814;MQMR=59.9348;NS=94;NUMALT=1;ODDS=0.443564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=352693;QR=91465;RO=2561;RPL=89;RPP=20665;RPPR=1099.15;RPR=9779;RUN=1;SAF=0;SAP=21431.1;SAR=9868;SRF=0;SRP=5564.15;SRR=2561;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:12,35:12:423:35:1260:-99.5562,0,-24.2567	1/1:214:11,203:11:396:203:7262:-616.443,-28.4377,0	0/1:199:49,150:49:1728:150:5343:-354.852,0,-95.469	0/1:242:52,190:52:1864:190:6816:-460.577,0,-95.1902	0/1:33:10,23:10:360:23:824:-50.6466,0,-22.8103	0/1:73:37,36:37:1320:36:1292:-74.3593,0,-97.1196	1/1:140:11,129:11:392:129:4600:-378.531,-6.52414,0	0/1:213:50,163:50:1787:163:5824:-460.149,0,-96.9632	0/1:105:26,79:26:932:79:2832:-184.934,0,-52.5907	0/1:153:44,109:44:1566:109:3884:-303.696,0,-95.1726	0/1:75:16,59:16:576:59:2107:-143.781,0,-29.5977	0/1:98:20,78:20:716:78:2792:-222.011,0,-35.2668	0/1:96:29,67:29:1027:67:2384:-156.181,0,-63.8433	0/1:95:29,66:29:1044:66:2328:-181.181,0,-65.677	0/1:113:35,78:35:1252:78:2799:-218.132,0,-78.9687	0/1:80:16,64:16:561:64:2292:-182.459,0,-26.7347	0/1:83:9,74:9:320:74:2623:-173.115,0,-4.15687	0/1:90:14,76:14:495:76:2700:-179.793,0,-17.7903	0/1:44:8,36:8:284:36:1296:-103.699,0,-12.658	1/1:292:19,273:19:684:273:9747:-815.286,-26.0104,0	0/1:259:77,182:77:2756:182:6518:-400.54,0,-170.315	1/1:82:5,77:5:180:77:2759:-231.993,-8.1324,0	0/1:153:36,117:36:1283:117:4172:-279.177,0,-69.715	0/1:60:26,34:26:932:34:1200:-89.4646,0,-66.1371	0/1:79:24,55:24:851:55:1963:-153.163,0,-53.1281	0/1:292:49,243:49:1738:243:8708:-611.359,0,-68.8019	0/1:278:56,222:56:2008:222:7941:-513.218,0,-97.307	0/1:47:13,34:13:468:34:1211:-80.7708,0,-28.3112	0/1:294:97,197:97:3479:197:7060:-467.865,0,-224.814	0/1:337:54,283:54:1916:283:10152:-663.615,0,-71.2661	1/1:179:16,163:16:563:163:5840:-474.704,-2.8852,0	0/1:4:1,3:1:36:3:108:-6.58486,0,-2.39415	0/1:17:5,12:5:180:12:428:-32.6288,0,-11.4346	0/1:9:4,5:4:144:5:176:-8.95966,0,-10.6043	0/1:22:8,14:8:288:14:489:-32.7299,0,-19.6447	0/1:9:3,6:3:108:6:201:-15.7078,0,-7.3659	0/1:369:103,266:103:3687:266:9479:-741.977,0,-220.952	0/1:243:23,220:23:815:220:7836:-631.961,0,-0.520478	0/1:81:11,70:11:379:70:2484:-173.573,0,-10.0571	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:176:22,154:22:792:154:5499:-373.122,0,-18.3059	0/1:62:16,46:16:561:46:1656:-130.665,0,-32.1533	0/1:142:30,112:30:1080:112:3999:-317.354,0,-54.1387	0/1:112:14,98:14:500:98:3520:-283.287,0,-11.6208	0/1:87:27,60:27:957:60:2131:-165.868,0,-60.2543	0/1:95:43,52:43:1548:52:1853:-138.45,0,-111.015	0/1:152:31,121:31:1104:121:4327:-279.968,0,-53.9141	1/1:160:15,145:15:531:145:5191:-419.207,-0.0428939,0	0/1:168:16,152:16:572:152:5432:-438.434,0,-0.61008	0/1:216:53,163:53:1899:163:5829:-404.904,0,-106.162	0/1:201:39,162:39:1404:162:5802:-461.785,0,-66.1499	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	0/1:176:19,157:19:680:157:5622:-453.11,0,-8.54788	0/1:81:13,68:13:468:68:2436:-195.112,0,-18.0762	1/1:22:1,21:1:36:21:756:-54.0252,-3.02439,0	0/1:250:42,208:42:1503:208:7421:-591.577,0,-60.3063	0/1:45:11,34:11:377:34:1216:-96.2002,0,-20.7116	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:36:5,31:5:180:31:1108:-89.1939,0,-5.71498	0/1:97:30,67:30:1072:67:2404:-160.06,0,-67.5925	0/1:159:43,116:43:1516:116:4116:-322.763,0,-88.8666	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:293:82,211:82:2952:211:7576:-523.668,0,-177.711	0/1:309:37,272:37:1306:272:9757:-783.164,0,-24.8217	0/1:79:14,65:14:504:65:2315:-160.537,0,-21.9167	1/1:78:6,72:6:201:72:2568:-188.872,-5.0633,0	0/1:231:24,207:24:836:207:7409:-597.31,0,-6.01678	0/1:189:37,152:37:1324:152:5432:-432.112,0,-62.5674	0/1:41:14,27:14:500:27:955:-60.4255,0,-32.9939	0/1:106:13,93:13:468:93:3331:-201.025,0,-10.5505	0/1:107:30,77:30:1071:77:2764:-187.392,0,-64.4914	0/1:33:15,18:15:540:18:648:-37.4212,0,-39.0025	0/1:158:20,138:20:720:138:4936:-396.825,0,-17.566	0/1:161:57,104:57:2044:104:3732:-225.959,0,-135.766	0/1:187:31,156:31:1116:156:5555:-442.675,0,-44.4591	0/1:334:102,232:102:3634:232:8332:-565.793,0,-226.721	0/1:49:7,42:7:248:42:1503:-100.081,0,-7.91372	0/1:110:22,88:22:788:88:3157:-222.357,0,-38.1315	0/1:11:4,7:4:144:7:247:-14.4363,0,-10.0023	0/1:190:22,168:22:784:168:6028:-404.459,0,-13.6882	1/1:164:14,150:14:504:150:5341:-435.126,-3.67083,0	0/1:319:64,255:64:2291:255:9130:-620.067,0,-110.422	0/1:155:25,130:25:888:130:4647:-307.547,0,-33.5794	0/1:104:32,72:32:1152:72:2568:-172.854,0,-72.683	0/1:118:17,100:17:612:100:3538:-283.048,0,-19.8331	0/1:217:41,176:41:1472:176:6279:-496.132,0,-67.4526	0/1:72:12,60:12:432:60:2147:-171.823,0,-17.547	0/1:89:28,61:28:995:61:2165:-127.018,0,-63.0723	0/1:110:23,87:23:828:87:3111:-223.656,0,-41.7308	0/1:56:15,41:15:536:41:1472:-96.2591,0,-31.7171	0/1:121:38,83:38:1356:83:2956:-192.561,0,-85.9159	0/1:116:31,85:31:1097:85:3043:-192.313,0,-64.1185	0/1:171:42,129:42:1504:129:4606:-363.226,0,-84.1739	0/1:179:55,124:55:1976:124:4398:-342.109,0,-124.23
chr06	2178154	.	GAAGGTATTAAA	GA,CAAGGTATTAAA	9203.53	PASS	AB=0.282035,0.171656;ABP=2614.71,4350.82;AC=33,31;AF=0.175532,0.164894;AN=188;AO=1792,820;CIGAR=1M10D1M,1X11M;DP=12290;DPB=10795.5;DPRA=1.07031,0.912562;EPP=3894.29,1774.94;EPPR=10651.9;GTI=27;LEN=10,1;MEANALT=2.18868,2.5;MQM=24.9174,59.9976;MQMR=59.9726;NS=94;NUMALT=2;ODDS=1.06275;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=61534,29375;QR=336345;RO=9599;RPL=1792,819;RPP=3894.29,1774.94;RPPR=10651.9;RPR=0,1;RUN=1,1;SAF=0,0;SAP=3894.29,1783.62;SAR=1792,820;SRF=0;SRP=20847;SRR=9599;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	0/2:49:40,0,8:40:1401:0,8:0,288:-11.4582,-23.4994,-137.488,0,-113.987,-111.579	0/0:217:215,1,0:215:7567:1,0:36,0:0,-63.0375,-678.735,-64.7214,-679.036,-680.786	0/2:191:105,52,33:105:3690:52,33:1749,1184:-65.0176,-6.69621,-291.389,0,-210.465,-290.5	0/1:234:158,76,0:158:5486:76,0:2627,0:-102.165,0,-423.447,-149.727,-446.325,-595.77	0/2:27:7,10,10:7:242:10,10:334,360:-27.3296,-11.4075,-28.0559,0,-1.68361,-16.7	0/2:66:27,14,25:27:943:14,25:487,900:-65.393,-49.235,-121.722,0,-52.4961,-69.2622	0/0:149:149,0,0:149:5205:0,0:0,0:0,-44.8535,-468.606,-44.8535,-468.606,-468.606	0/2:216:175,0,39:175:6134:0,39:0,1388:-60.4993,-113.18,-612.325,0,-499.202,-487.462	0/2:99:49,27,22:49:1708:27,22:917,784:-49.2106,-17.7056,-148.48,0,-92.7004,-132.361	0/2:154:130,0,22:130:4548:0,22:0,784:-24.7953,-63.9292,-433.94,0,-370.034,-363.411	0/1:74:46,21,6:46:1600:21,6:721,216:-27.242,0,-123.76,-23.4427,-112.455,-151.79	0/0:101:100,0,0:100:3484:0,0:0,0:0,-30.103,-313.415,-30.103,-313.415,-313.415	0/2:88:51,19,17:51:1793:19,17:668,608:-34.284,-16.5595,-156.79,0,-112.931,-140.921	0/2:98:75,0,22:75:2618:0,22:0,792:-42.1893,-64.7665,-277.709,0,-213.083,-206.46	0/0:115:115,0,0:115:4040:0,0:0,0:0,-34.6184,-363.797,-34.6184,-363.797,-363.797	0/2:80:72,0,8:72:2514:0,8:0,288:-2.18501,-23.8592,-228.339,0,-204.839,-202.43	0/1:80:50,30,0:50:1754:30,0:1014,0:-36.7254,0,-134.062,-51.7769,-143.093,-194.598	0/1:85:58,27,0:58:2057:27,0:960,0:-29.9351,0,-159.815,-47.3949,-167.942,-215.069	0/0:46:46,0,0:46:1614:0,0:0,0:0,-13.8474,-145.55,-13.8474,-145.55,-145.55	0/0:301:298,0,0:298:10449:0,0:0,0:0,-89.7069,-940.006,-89.7069,-940.006,-940.006	0/1:250:119,86,45:119:4140:86,45:2966,1616:-119.57,0,-310.729,-23.5253,-204.79,-346.671	0/0:80:80,0,0:80:2814:0,0:0,0:0,-24.0824,-253.504,-24.0824,-253.504,-253.504	0/1:138:77,44,17:77:2709:44,17:1484,612:-62.7476,0,-207.275,-35.9604,-170.583,-251.434	0/2:62:42,1,19:42:1476:1,19:21,684:-43.3267,-54.5471,-174.381,0,-118.868,-114.576	0/2:82:61,0,19:61:2128:0,19:0,676:-36.7578,-55.1206,-228.198,0,-173.103,-167.383	0/1:268:183,84,0:183:6417:84,0:2868,0:-120.136,0,-497.08,-175.225,-522.367,-697.48	0/1:271:169,98,0:169:5904:98,0:3259,0:-123.657,0,-450.755,-174.531,-480.256,-654.867	0/1:47:35,12,0:35:1233:12,0:416,0:-11.588,0,-97.1259,-22.124,-100.738,-122.597	0/2:284:121,88,71:121:4236:88,71:2988,2537:-170.464,-23.6027,-341.767,0,-161.405,-323.331	0/1:326:171,123,32:171:5999:123,32:4172,1152:-169.979,0,-451.17,-127.432,-394.198,-606.072	0/0:182:180,0,0:180:6301:0,0:0,0:0,-54.1854,-566.838,-54.1854,-566.838,-566.838	0/2:3:1,1,1:1:36:1,1:36,36:-2.69762,-1.22474,-3.86113,0,-1.22474,-2.69762	0/0:18:17,1,0:17:594:1,0:36,0:0,-3.04501,-51.414,-5.11751,-51.715,-53.5439	0/2:6:1,1,3:1:36:1,3:36,108:-8.57176,-7.14574,-9.78562,0,-1.25344,-2.06796	0/2:23:13,4,4:13:453:4,4:135,144:-7.88116,-4.9513,-40.595,0,-30.0455,-35.7053	0/0:9:9,0,0:9:315:0,0:0,0:0,-2.70927,-28.6882,-2.70927,-28.6882,-28.6882	0/2:374:317,0,52:317:11058:0,52:0,1856:-55.8911,-151.318,-1050.69,0,-899.375,-883.722	0/0:246:246,0,0:246:8602:0,0:0,0:0,-74.0534,-774.161,-74.0534,-774.161,-774.161	0/1:78:57,20,0:57:2008:20,0:711,0:-17.4654,0,-157.455,-34.6241,-163.476,-198.195	0/0:3:3,0,0:3:104:0,0:0,0:0,-0.90309,-9.70309,-0.90309,-9.70309,-9.70309	0/1:171:112,58,0:112:3908:58,0:1994,0:-71.7957,0,-300.331,-105.511,-317.791,-423.386	0/0:64:64,0,0:64:2238:0,0:0,0:0,-19.2659,-201.685,-19.2659,-201.685,-201.685	0/2:143:112,0,29:112:3940:0,29:0,1029:-50.1164,-83.8318,-404.563,0,-320.726,-311.996	0/0:112:104,0,5:104:3627:0,5:0,180:0,-31.3071,-326.301,-16.5888,-311.613,-310.108	0/2:89:74,0,15:74:2575:0,15:0,540:-22.1449,-44.4211,-253.79,0,-209.727,-205.211	0/2:98:69,0,28:69:2412:0,28:0,1004:-61.1162,-81.8872,-278.099,0,-196.208,-187.779	0/1:146:74,46,26:74:2601:46,26:1592,936:-56.7043,0,-197.852,-2.55874,-135.324,-206.516	0/0:164:161,0,3:161:5612:0,3:0,108:0,-48.4658,-504.862,-39.2937,-496.049,-495.146	0/0:172:171,0,0:171:6008:0,0:0,0:0,-51.4761,-540.481,-51.4761,-540.481,-540.481	0/1:211:121,52,35:121:4252:52,35:1813,1237:-65.9798,0,-330.435,-1.62446,-245.345,-337.243	0/2:202:179,0,21:179:6269:0,21:0,752:-7.509,-61.3934,-571.482,0,-510.155,-503.833	0/0:16:16,0,0:16:558:0,0:0,0:0,-4.81648,-50.5485,-4.81648,-50.5485,-50.5485	0/0:181:179,0,0:179:6307:0,0:0,0:0,-53.8844,-567.369,-53.8844,-567.369,-567.369	0/0:84:83,0,0:83:2897:0,0:0,0:0,-24.9855,-260.611,-24.9855,-260.611,-260.611	0/1:21:12,7,2:12:425:7,2:240,68:-8.46785,0,-32.526,-6.53927,-29.1195,-40.6388	0/2:256:231,1,24:231:8072:1,24:36,864:-1.07767,-68.7853,-725.117,0,-654.919,-649.529	0/0:47:45,0,1:45:1575:0,1:0,36:0,-13.5463,-141.682,-10.6089,-138.744,-138.443	0/2:17:11,0,5:11:386:0,5:0,180:-11.3758,-14.6871,-46.0952,0,-31.4057,-29.9005	0/0:36:35,0,1:35:1231:0,1:0,36:0,-10.536,-110.736,-7.2388,-107.798,-107.497	0/2:87:46,19,22:46:1637:19,22:671,792:-50.842,-30.0468,-157.741,0,-98.836,-126.878	0/0:161:160,0,0:160:5559:0,0:0,0:0,-48.1648,-500.094,-48.1648,-500.094,-500.094	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	0/1:277:208,69,0:208:7335:69,0:2389,0:-82.9578,0,-576.833,-145.572,-597.604,-742.887	0/0:318:314,1,1:314:10978:1,1:36,36:0,-92.5476,-985.317,-91.5773,-982.681,-984.381	0/1:76:59,17,0:59:2030:17,0:579,0:-13.3366,0,-160.094,-31.0974,-165.211,-196.049	0/1:73:52,21,0:52:1815:21,0:687,0:-24.5685,0,-141.657,-40.2221,-147.979,-187.926	0/0:238:236,0,1:236:8242:0,1:0,36:0,-71.0431,-741.46,-68.1057,-738.522,-738.221	0/0:199:198,0,0:198:6944:0,0:0,0:0,-59.6039,-624.687,-59.6039,-624.687,-624.687	0/1:40:30,9,0:30:1052:9,0:282,0:-6.51441,0,-82.9531,-15.5453,-85.6624,-101.243	0/1:100:48,51,0:48:1689:51,0:1780,0:-74.1148,0,-122.134,-88.5643,-137.487,-226.118	0/1:108:71,37,0:71:2487:37,0:1299,0:-58.0377,0,-191.576,-79.4108,-202.714,-281.827	0/2:30:12,8,10:12:414:8,10:276,360:-25.8207,-13.6165,-44.8334,0,-17.8607,-30.6777	0/0:161:161,0,0:161:5653:0,0:0,0:0,-48.4658,-508.906,-48.4658,-508.906,-508.906	0/2:153:77,46,30:77:2710:46,30:1594,1080:-64.9962,-8.67784,-215.441,0,-141.164,-211.665	0/2:190:165,1,24:165:5747:1,24:36,860:-20.585,-68.4246,-535.46,0,-465.621,-460.231	0/1:320:237,81,0:237:8319:81,0:2803,0:-88.9661,0,-652.732,-160.31,-677.115,-837.432	0/1:49:32,17,0:32:1109:17,0:570,0:-19.5557,0,-85.3659,-29.1886,-90.4834,-119.406	0/1:108:86,22,0:86:3040:22,0:756,0:-11.9439,0,-241.322,-37.8325,-247.945,-285.527	0/2:11:4,4,3:4:141:4,3:140,104:-7.30024,-1.59989,-11.8797,0,-4.63309,-10.6401	0/1:180:117,62,0:117:4106:62,0:2116,0:-76.2712,0,-315.49,-111.492,-334.154,-445.73	0/0:165:165,0,0:165:5806:0,0:0,0:0,-49.6699,-522.669,-49.6699,-522.669,-522.669	0/1:306:208,97,0:208:7307:97,0:3342,0:-127.388,0,-565.528,-190.002,-594.728,-784.806	0/1:150:85,64,0:85:2996:64,0:2229,0:-100.782,0,-224.664,-126.37,-243.93,-370.363	0/1:94:71,22,0:71:2509:22,0:768,0:-21.9462,0,-197.708,-43.3194,-204.331,-247.729	0/0:121:112,0,9:112:3919:0,9:0,324:0,-33.7154,-352.555,-6.91877,-326.117,-323.408	0/0:225:219,4,0:219:7702:4,0:135,0:0,-58.1521,-683.943,-65.9256,-685.148,-692.962	0/2:73:63,0,7:63:2243:0,7:0,252:-1.59703,-20.5619,-203.373,0,-182.81,-180.703	0/1:84:53,30,0:53:1836:30,0:1012,0:-35.3521,0,-140.171,-51.3067,-149.202,-200.596	0/1:111:90,20,0:90:3186:20,0:716,0:-7.89607,0,-253.643,-34.9888,-259.663,-294.613	0/1:51:38,13,0:38:1337:13,0:460,0:-12.1501,0,-105.278,-23.5892,-109.192,-132.518	0/1:117:68,30,17:68:2379:30,17:1053,612:-34.0039,0,-184.512,-4.49742,-143.605,-193.004	0/1:109:42,43,24:42:1474:43,24:1489,864:-72.2939,0,-107.01,-14.4009,-49.4531,-127.185	0/0:172:171,0,0:171:5972:0,0:0,0:0,-51.4761,-537.398,-51.4761,-537.398,-537.398	0/0:181:180,0,0:180:6369:0,0:0,0:0,-54.1854,-572.953,-54.1854,-572.953,-572.953
chr06	2178357	.	ACATA	GCATA,GCATG	175154	PASS	AB=0.458048,0.534428;ABP=70.0576,48.1646;AC=139,49;AF=0.739362,0.260638;AN=188;AO=5975,2365;CIGAR=1X4M,1X3M1X;DP=8393;DPB=8393;DPRA=30.0717,1.23104;EPP=12925.5,5138.54;EPPR=9.52472;GTI=1;LEN=1,5;MEANALT=2,2.53704;MQM=57.7913,44.1577;MQMR=60;NS=94;NUMALT=2;ODDS=0.500121;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=212803,82801;QR=108;RO=3;RPL=5969,2365;RPP=12925.5,5138.54;RPPR=9.52472;RPR=6,0;RUN=1,1;SAF=5975,2365;SAP=12977.6,5138.54;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:67:0,67,0:0:0:67,0:2400,0:-216.081,-20.169,0,-216.081,-20.169,-216.081	1/1:85:0,85,0:0:0:85,0:3036,0:-272.865,-25.5876,0,-272.865,-25.5876,-272.865	1/2:222:0,84,134:0:0:84,134:3012,4670:-613.241,-367.691,-342.405,-245.635,0,-205.297	1/2:264:0,100,162:0:0:100,162:3556,5662:-745.853,-456.129,-426.026,-289.805,0,-241.038	1/2:33:0,19,14:0:0:19,14:680,499:-95.2153,-39.8836,-34.1641,-55.683,0,-51.4686	1/2:16:0,11,5:0:0:11,5:392,177:-46.3122,-14.365,-11.0536,-32.2957,0,-30.7905	1/1:51:0,50,0:0:0:50,0:1775,0:-159.779,-15.0515,0,-159.779,-15.0515,-159.779	1/1:163:0,163,0:0:0:163,0:5811,0:-522.066,-49.0679,0,-522.066,-49.0679,-522.066	1/2:68:0,24,44:0:0:24,44:856,1520:-190.043,-120.376,-113.151,-70.0163,0,-56.7709	1/1:71:0,71,0:0:0:71,0:2527,0:-227.679,-21.3731,0,-227.679,-21.3731,-227.679	1/2:50:0,22,28:0:0:22,28:773,973:-141.373,-78.4988,-71.8761,-63.2218,0,-54.793	1/1:103:0,102,0:0:0:102,0:3631,0:-325.992,-30.7051,0,-325.992,-30.7051,-325.992	1/2:57:0,17,40:0:0:17,40:608,1408:-160.761,-111.203,-106.086,-49.9107,0,-37.8695	1/1:75:0,75,0:0:0:75,0:2671,0:-240.203,-22.5773,0,-240.203,-22.5773,-240.203	1/1:64:1,63,0:1:36:63,0:2231,0:-197.319,-15.6676,0,-197.62,-18.9649,-200.558	1/1:71:0,71,0:0:0:71,0:2536,0:-228.122,-21.3731,0,-228.122,-21.3731,-228.122	1/2:43:0,24,18:0:0:24,18:863,615:-118.751,-48.4284,-41.2036,-70.3799,0,-64.9614	1/2:29:0,16,13:0:0:16,13:557,460:-81.8983,-36.7975,-31.981,-45.4466,0,-41.5332	1/1:24:0,24,0:0:0:24,0:822,0:-74.2437,-7.22472,0,-74.2437,-7.22472,-74.2437	1/1:184:0,184,0:0:0:184,0:6573,0:-591.351,-55.3895,0,-591.351,-55.3895,-591.351	1/2:80:0,44,36:0:0:44,36:1557,1227:-224.127,-97.3912,-84.1459,-127.078,0,-116.241	1/1:86:0,86,0:0:0:86,0:3061,0:-275.611,-25.8886,0,-275.611,-25.8886,-275.611	1/2:132:0,55,75:0:0:55,75:1945,2623:-367.917,-209.512,-192.955,-158.474,0,-135.897	1/1:100:0,95,5:0:0:95,5:3399,178:-305.318,-28.5979,0,-291.208,-14.1409,-289.703	1/1:77:0,77,0:0:0:77,0:2714,0:-243.809,-23.1793,0,-243.809,-23.1793,-243.809	1/2:220:0,104,113:0:0:104,113:3714,3991:-623.517,-321.088,-289.781,-302.484,0,-268.468	1/2:264:0,123,140:0:0:123,140:4420,4931:-749.428,-389.277,-352.25,-360.253,0,-318.108	1/2:28:0,12,15:0:0:12,15:432,514:-75.8727,-40.7227,-37.1103,-35.1674,0,-30.6519	1/2:356:0,159,196:0:0:159,196:5645,6828:-1008.23,-548.331,-500.467,-459.96,0,-400.958	1/2:127:0,46,80:0:0:46,80:1644,2815:-354.618,-220.834,-206.987,-133.775,0,-109.693	1/1:82:0,78,3:0:0:78,3:2788,108:-250.794,-23.4803,0,-242.99,-15.6205,-242.087	1/2:5:0,4,1:0:0:4,1:144,36:-14.9494,-3.20167,-1.99755,-12.0999,0,-11.7989	1/1:11:0,10,0:0:0:10,0:356,0:-32.0337,-3.0103,0,-32.0337,-3.0103,-32.0337	1/2:10:0,7,3:0:0:7,3:252,102:-28.8952,-8.4105,-6.30329,-20.825,0,-19.9219	2/2:3:0,0,3:0:0:0,3:0,108:-9.80756,-9.80756,-9.80756,-0.90309,-0.90309,0	1/1:12:0,12,0:0:0:12,0:432,0:-39.032,-3.61236,0,-39.032,-3.61236,-39.032	1/1:166:0,165,0:0:0:165,0:5911,0:-531.482,-49.67,0,-531.482,-49.67,-531.482	1/1:110:0,110,0:0:0:110,0:3894,0:-350.073,-33.1133,0,-350.073,-33.1133,-350.073	1/2:30:0,17,13:0:0:17,13:569,460:-82.8424,-36.7975,-31.68,-46.3853,0,-42.4719	1/1:5:0,5,0:0:0:5,0:176,0:-16.1745,-1.50515,0,-16.1745,-1.50515,-16.1745	1/2:114:0,65,48:0:0:65,48:2315,1706:-322.479,-134.36,-114.793,-188.117,0,-173.668	1/1:24:0,24,0:0:0:24,0:860,0:-77.577,-7.22472,0,-77.577,-7.22472,-77.577	1/1:245:0,244,0:0:0:244,0:8684,0:-780.087,-73.4513,0,-780.087,-73.4513,-780.087	1/1:52:0,51,0:0:0:51,0:1794,0:-161.358,-15.3525,0,-161.358,-15.3525,-161.358	1/1:50:0,50,0:0:0:50,0:1765,0:-158.91,-15.0515,0,-158.91,-15.0515,-158.91	1/1:103:0,103,0:0:0:103,0:3660,0:-329.574,-31.0061,0,-329.574,-31.0061,-329.574	1/2:116:0,54,61:0:0:54,61:1907,2144:-325.221,-170.022,-153.767,-155.248,0,-136.885	1/1:184:0,180,1:0:0:180,1:6464,36:-581.217,-54.1854,0,-578.308,-51.2763,-578.007	1/1:114:0,114,0:0:0:114,0:4065,0:-365.651,-34.3174,0,-365.651,-34.3174,-365.651	1/2:150:0,77,72:0:0:77,72:2715,2531:-424.402,-203.747,-180.568,-220.699,0,-199.025	1/1:87:1,86,0:1:36:86,0:3075,0:-273.267,-22.5913,0,-273.568,-25.8886,-276.506	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:111:0,110,0:0:0:110,0:3952,0:-355.098,-33.1133,0,-355.098,-33.1133,-355.098	1/1:29:0,29,0:0:0:29,0:1035,0:-93.4341,-8.72987,0,-93.4341,-8.72987,-93.4341	1/2:10:0,3,7:0:0:3,7:108,251:-29.1045,-20.294,-19.3909,-9.16729,0,-7.06008	1/1:128:0,124,0:0:0:124,0:4374,0:-392.884,-37.3277,0,-392.884,-37.3277,-392.884	1/1:54:0,54,0:0:0:54,0:1927,0:-173.676,-16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chr06	2178366	.	C	A	10516.6	PASS	AB=0.247025;ABP=3085.84;AC=59;AF=0.31383;AN=188;AO=1627;CIGAR=1X;DP=10025;DPB=10025;DPRA=4.19894;EPP=3536;EPPR=18236.9;GTI=26;LEN=1;MEANALT=1.01111;MQM=44.5857;MQMR=53.9359;NS=94;NUMALT=1;ODDS=0.487601;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57666;QR=299183;RO=8397;RPL=1;RPP=3527.32;RPPR=18219.5;RPR=1626;RUN=1;SAF=1;SAP=3527.32;SAR=1626;SRF=8395;SRP=18219.5;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:72:72,0:72:2545:0:0:0,-21.6742,-229.122	0/1:93:84,9:84:3003:9:324:-1.44937,0,-241.473	0/0:230:215,15:215:7678:15:536:0,-28.8665,-635.007	0/1:290:259,31:259:9245:31:1104:-11.8837,0,-739.195	0/0:35:33,2:33:1179:2:72:0,-5.67451,-100.222	0/0:18:17,1:17:604:1:36:0,-1.82712,-50.6327	0/1:69:50,19:50:1796:19:676:-40.1926,0,-141.121	0/0:177:169,8:169:6023:8:284:0,-31.4509,-519.346	0/1:90:70,20:70:2504:20:720:-25.065,0,-194.004	0/1:110:72,38:72:2580:38:1343:-67.8695,0,-199.33	0/1:65:48,17:48:1699:17:600:-23.4096,0,-132.817	0/1:122:100,22:100:3549:22:792:-34.5918,0,-282.296	0/1:89:60,29:60:2128:29:1032:-52.9298,0,-160.807	0/1:97:77,20:77:2723:20:708:-21.6243,0,-215.322	0/1:96:66,30:66:2355:30:1072:-66.982,0,-183.201	0/1:87:70,17:70:2495:17:612:-17.8821,0,-198.297	0/1:59:43,16:43:1510:16:559:-32.7903,0,-116.174	0/1:42:28,14:28:1000:14:495:-31.9741,0,-76.4433	0/1:33:23,10:23:811:10:356:-22.3886,0,-63.2587	0/0:191:185,6:185:6603:6:216:0,-38.0321,-574.624	0/1:133:78,55:78:2784:55:1951:-104.796,0,-207.977	0/0:85:84,1:84:2993:1:36:0,-21.9944,-265.89	0/0:140:126,14:126:4499:14:500:0,-6.27479,-365.631	0/0:102:97,5:97:3457:5:180:0,-17.0388,-296.783	0/0:80:78,2:78:2796:2:63:0,-19.0879,-246.073	0/1:266:215,51:215:7649:51:1823:-83.9166,0,-602.601	0/0:279:264,15:264:9421:15:527:0,-36.5828,-786.134	0/1:39:28,11:28:989:11:387:-23.3445,0,-76.0357	0/0:385:354,31:354:12599:31:1112:0,-32.854,-1041.04	0/1:150:125,25:125:4466:25:896:-16.3482,0,-347.649	0/1:98:83,15:83:2964:15:540:-18.3181,0,-236.364	0/1:10:5,5:5:180:5:167:-11.3709,0,-13.4443	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.7299	0/1:12:10,2:10:360:2:72:-3.21539,0,-28.7747	0/1:6:3,3:3:108:3:104:-7.88127,0,-8.00138	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.032	0/1:242:171,71:171:6122:71:2524:-119.407,0,-477.906	0/0:122:114,8:114:4075:8:284:0,-10.8807,-339.779	0/1:40:30,10:30:1072:10:343:-18.8533,0,-83.6519	0/1:6:5,1:5:180:1:36:-1.78305,0,-14.7339	0/1:126:111,15:111:3956:15:540:-10.6806,0,-313.317	0/1:32:25,7:25:892:7:248:-12.9783,0,-70.8234	0/0:245:241,4:241:8591:4:144:0,-63.3319,-761.426	0/1:81:53,28:53:1885:28:977:-48.5527,0,-144.961	0/1:77:54,23:54:1900:23:820:-40.8682,0,-147.851	0/0:112:105,7:105:3759:7:252:0,-17.1821,-321.945	0/0:122:116,6:116:4150:6:207:0,-22.8472,-354.758	0/0:202:191,11:191:6812:11:396:0,-25.8726,-577.709	0/0:126:115,11:115:4115:11:387:0,-3.37294,-335.057	0/1:182:150,32:150:5354:32:1123:-29.6021,0,-423.553	0/0:96:89,7:89:3179:7:252:0,-9.81549,-267.138	0/1:12:9,3:9:324:3:108:-6.42979,0,-25.8935	0/0:116:112,4:112:3996:4:144:0,-21.7865,-346.302	0/1:40:29,11:29:1040:11:392:-23.5306,0,-81.8429	0/1:12:10,2:10:360:2:72:-1.24918,0,-28.5768	0/0:150:134,16:134:4787:16:545:0,-2.00685,-386.755	0/0:58:55,3:55:1932:3:108:0,-7.41759,-164.082	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6584	0/1:29:26,3:26:923:3:108:-1.33101,0,-74.6569	0/1:70:58,12:58:2071:12:432:-8.68992,0,-162.946	0/1:94:81,13:81:2876:13:464:-13.5919,0,-230.737	0/1:11:9,2:9:315:2:68:-1.49719,0,-25.2303	0/1:277:150,127:150:5375:127:4489:-317.189,0,-396.957	0/0:177:162,15:162:5774:15:515:0,-6.73139,-472.691	0/1:71:58,13:58:2065:13:464:-20.6312,0,-162.436	0/0:95:93,2:93:3303:2:72:0,-21.7809,-288.853	0/1:128:114,14:114:4058:14:496:-5.37311,0,-326.695	0/1:203:178,25:178:6364:25:896:-17.7354,0,-511.65	0/1:52:47,5:47:1649:5:180:-0.856892,0,-130.672	0/0:57:56,1:56:1983:1:36:0,-13.5673,-172.889	0/1:61:34,27:34:1207:27:950:-65.3896,0,-89.3111	0/1:31:24,7:24:845:7:239:-11.1133,0,-66.7205	0/0:84:82,2:82:2918:2:72:0,-18.4628,-255.584	0/0:125:111,14:111:3943:14:496:0,-0.772117,-313.139	0/1:133:87,46:87:3099:46:1622:-78.8341,0,-238.455	0/1:190:153,37:153:5469:37:1320:-61.1749,0,-430.244	0/0:151:148,3:148:5265:3:108:0,-35.3956,-453.724	0/1:152:135,17:135:4780:17:599:-8.38067,0,-376.253	0/1:14:12,2:12:428:2:72:-1.6282,0,-34.2426	0/0:121:112,9:112:3972:9:320:0,-7.35715,-322.728	0/0:150:143,7:143:5086:7:248:0,-22.6838,-434.685	0/0:292:266,26:266:9494:26:909:0,-6.2093,-767.151	0/1:98:57,40:57:2008:40:1428:-98.6686,0,-150.141	0/1:83:63,20:63:2236:20:708:-38.8658,0,-174.975	0/1:76:53,23:53:1900:23:811:-36.9899,0,-148.369	0/1:146:113,33:113:4004:33:1165:-57.1638,0,-316.562	0/1:37:22,15:22:768:15:531:-33.9349,0,-58.2597	0/1:101:69,32:69:2451:32:1119:-70.2436,0,-186.527	0/1:83:66,17:66:2349:17:599:-29.1562,0,-182.489	0/0:51:50,1:50:1777:1:36:0,-11.7633,-152.759	0/1:133:107,26:107:3786:26:920:-25.8609,0,-295.383	0/1:75:55,20:55:1968:20:716:-26.3994,0,-153.614	0/1:161:75,86:75:2683:86:3044:-223.577,0,-192.902	0/1:131:85,46:85:3027:46:1617:-105.417,0,-233.165
chr06	2178378	.	T	A	148681	PASS	AB=0.751017;ABP=3232.04;AC=126;AF=0.670213;AN=188;AO=7717;CIGAR=1X;DP=9381;DPB=9381;DPRA=0;EPP=16760.3;EPPR=3603.31;GTI=25;LEN=1;MEANALT=1.05319;MQM=53.8906;MQMR=44.468;NS=94;NUMALT=1;ODDS=0.204181;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268984;QR=58919;RO=1658;RPL=7716;RPP=16751.6;RPPR=3594.63;RPR=1;RUN=1;SAF=7716;SAP=16751.6;SAR=1;SRF=1;SRP=3594.63;SRR=1657;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:68:0,68:0:0:68:2391:-215.276,-20.47,0	0/1:84:9,75:9:320:75:2611:-209.642,0,-3.80494	1/1:215:15,200:15:525:200:6975:-577.185,-25.6574,0	0/1:270:32,238:32:1140:238:8229:-654.048,0,-20.9527	1/1:34:2,32:2:72:32:1131:-96.2452,-5.37348,0	1/1:15:1,14:1:36:14:487:-40.2826,-0.924028,0	0/1:63:19,44:19:672:44:1547:-120.543,0,-41.6335	1/1:158:8,150:8:284:150:5186:-444.183,-25.7314,0	0/1:87:20,67:20:720:67:2311:-178.236,0,-25.9681	0/1:108:41,67:41:1444:67:2330:-177.442,0,-75.3672	0/1:60:18,42:18:629:42:1444:-111.142,0,-26.7947	0/1:122:22,100:22:788:100:3493:-277.404,0,-34.3182	0/1:87:29,58:29:1032:58:1995:-150.666,0,-52.595	0/1:91:23,68:23:812:68:2364:-184.589,0,-30.2909	0/1:92:31,61:31:1104:61:2096:-161.089,0,-71.0601	0/1:84:16,68:16:576:68:2378:-188.716,0,-15.5504	0/1:55:17,38:17:608:38:1322:-100.813,0,-38.3974	0/1:39:13,26:13:443:26:916:-69.8055,0,-28.2258	0/1:32:10,22:10:360:22:748:-57.8899,0,-23.049	1/1:170:6,163:6:203:163:5695:-494.012,-32.7214,0	0/1:134:56,78:56:2004:78:2729:-202.893,0,-108.294	1/1:80:1,79:1:36:79:2808:-249.254,-20.4892,0	1/1:132:14,118:14:504:118:4070:-327.546,-3.51103,0	1/1:96:5,90:5:180:90:3171:-271.174,-15.2808,0	1/1:74:1,73:1:36:73:2555:-227.073,-19.7175,0	0/1:254:53,201:53:1896:201:7055:-554.275,0,-94.015	1/1:257:16,241:16:572:241:8419:-695.197,-25.9221,0	0/1:36:11,25:11:384:25:854:-65.3175,0,-23.9868	1/1:366:31,335:31:1108:335:11751:-965.439,-27.2313,0	0/1:138:26,112:26:928:112:3887:-301.304,0,-22.2123	0/1:89:16,73:16:561:73:2543:-201.231,0,-22.9081	0/1:9:5,4:5:180:4:144:-10.5087,0,-12.8551	1/1:10:0,10:0:0:10:356:-32.132,-3.0103,0	0/1:12:2,10:2:72:10:356:-28.4126,0,-3.21539	0/1:6:3,3:3:108:3:104:-7.68025,0,-8.2498	1/1:11:0,11:0:0:11:390:-35.2847,-3.31133,0	0/1:228:72,156:72:2556:156:5427:-419.603,0,-126.317	1/1:106:8,98:8:284:98:3426:-281.504,-6.06023,0	0/1:40:10,30:10:356:30:1047:-81.5264,0,-19.9792	0/1:5:1,4:1:36:4:140:-11.4313,0,-2.08408	0/1:115:14,101:14:496:101:3482:-274.743,0,-10.0678	0/1:32:8,24:8:288:24:843:-66.4151,0,-16.5767	1/1:226:4,222:4:144:222:7747:-685.896,-57.6123,0	0/1:77:28,49:28:992:49:1704:-129.91,0,-50.8117	0/1:72:24,48:24:856:48:1641:-126.08,0,-46.1497	1/1:109:8,101:8:273:101:3520:-298.858,-14.7162,0	1/1:115:6,109:6:216:109:3785:-322.57,-20.5456,0	1/1:172:11,161:11:388:161:5646:-473.791,-17.5572,0	1/1:118:11,107:11:381:107:3740:-302.519,-2.1236,0	0/1:170:32,138:32:1129:138:4820:-379.841,0,-32.9938	1/1:88:7,81:7:252:81:2872:-239.551,-7.40725,0	0/1:12:3,9:3:108:9:316:-25.1665,0,-6.42979	1/1:105:4,101:4:144:101:3560:-307.057,-18.4751,0	0/1:38:12,26:12:432:26:928:-72.3945,0,-27.7287	0/1:9:2,7:2:72:7:240:-18.9819,0,-2.15227	0/1:131:17,114:17:608:114:3985:-318.566,0,-7.65336	1/1:52:3,49:3:108:49:1718:-144.828,-5.61141,0	1/1:9:0,9:0:0:9:320:-29.0564,-2.70927,0	0/1:29:3,26:3:108:26:886:-71.3178,0,-1.33101	0/1:66:12,54:12:428:54:1871:-146.611,0,-9.84334	0/1:91:15,76:15:523:76:2628:-209.332,0,-19.7787	0/1:9:2,7:2:68:7:252:-20.2046,0,-2.09925	0/1:261:126,135:126:4512:135:4776:-348.157,0,-323.706	0/1:165:16,148:16:568:148:5219:-419.596,0,-1.65122	0/1:68:13,55:13:460:55:1939:-152.405,0,-21.1759	1/1:85:2,83:2:68:83:2888:-252.17,-19.1445,0	0/1:117:14,103:14:504:103:3598:-288.676,0,-9.39548	0/1:189:25,164:25:888:164:5771:-462.492,0,-21.2398	1/1:50:4,46:4:144:46:1570:-126.28,-1.77135,0	1/1:52:1,49:1:36:49:1731:-150.646,-11.8178,0	0/1:60:27,33:27:960:33:1107:-80.6344,0,-66.8272	0/1:29:7,22:7:248:22:767:-60.3118,0,-11.9093	1/1:73:2,71:2:72:71:2438:-212.644,-15.1515,0	0/1:114:14,100:14:500:100:3487:-275.132,0,-2.58984	0/1:132:49,83:49:1764:83:2947:-225.144,0,-87.7738	0/1:183:37,146:37:1305:146:5111:-401.012,0,-61.9481	1/1:138:3,135:3:108:135:4663:-402.594,-31.4822,0	0/1:142:17,125:17:600:125:4331:-340.819,0,-11.4841	0/1:12:2,10:2:72:10:334:-26.4915,0,-2.23026	1/1:112:9,103:9:324:103:3571:-287.486,-4.28932,0	1/1:135:7,128:7:248:128:4426:-375.425,-18.084,0	0/1:273:26,247:26:932:247:8611:-688.315,0,-1.56267	0/1:94:40,54:40:1417:54:1857:-137.227,0,-98.8916	0/1:80:19,61:19:680:61:2085:-162.505,0,-37.2503	0/1:75:25,50:25:896:50:1750:-135.176,0,-43.8908	0/1:141:33,108:33:1163:108:3769:-296.933,0,-58.8053	0/1:34:15,19:15:524:19:646:-48.1935,0,-34.6062	0/1:95:34,61:34:1196:61:2087:-156.923,0,-78.9847	0/1:77:17,60:17:604:60:2062:-159.376,0,-31.4132	1/1:50:1,49:1:36:49:1743:-149.138,-11.4623,0	0/1:126:26,100:26:920:100:3495:-270.919,0,-27.6628	0/1:71:21,50:21:752:50:1692:-130.413,0,-29.6449	0/1:153:90,63:90:3209:63:2176:-149.511,0,-240.663	0/1:133:47,85:47:1626:85:2952:-225.784,0,-105.647
chr06	2192266	.	G	C	9617.32	PASS	AB=0.341711;ABP=453.284;AC=38;AF=0.208791;AN=182;AO=712;CIGAR=1X;DP=3791;DPB=3791;DPRA=1.77262;EPP=1549.1;EPPR=6688.97;GTI=2;LEN=1;MEANALT=1;MQM=59.986;MQMR=59.9471;NS=91;NUMALT=1;ODDS=1.74949;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25360;QR=108987;RO=3079;RPL=0;RPP=1549.1;RPPR=6688.97;RPR=712;RUN=1;SAF=0;SAP=1549.1;SAR=712;SRF=0;SRP=6688.97;SRR=3079;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/1:80:50,30:50:1766:30:1072:-72.7101,0,-135.139	0/1:48:18,30:18:648:30:1076:-82.7034,0,-44.2024	0/0:72:72,0:72:2530:0:0:0,-21.6742,-227.948	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:57:33,24:33:1175:24:856:-60.1968,0,-88.8982	0/0:17:17,0:17:588:0:0:0,-5.11751,-53.2422	0/0:17:17,0:17:588:0:0:0,-5.11751,-53.2422	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.871	0/0:40:40,0:40:1407:0:0:0,-12.0412,-126.926	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2163	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4125	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:24:24,0:24:843:0:0:0,-7.22472,-76.1798	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:67:54,13:54:1899:13:455:-21.1129,0,-151.016	0/1:51:30,21:30:1076:21:732:-50.8461,0,-81.8003	0/1:48:33,15:33:1171:15:540:-34.4871,0,-91.2472	0/0:16:15,1:15:521:1:36:0,-1.2182,-43.6181	0/1:20:18,2:18:627:2:72:-0.816123,0,-50.7338	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:152:110,42:110:3914:42:1478:-87.5548,0,-306.695	0/0:71:71,0:71:2482:0:0:0,-21.3731,-223.603	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:96:52,44:52:1856:44:1564:-112.153,0,-138.421	0/1:62:38,24:38:1333:24:856:-58.6972,0,-101.604	0/0:73:72,1:72:2545:1:36:0,-18.3769,-225.701	.:.:.:.:.:.:.:.	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:87:54,33:54:1894:33:1179:-80.2276,0,-144.545	0/1:109:89,20:89:3136:20:707:-31.1423,0,-249.652	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8767	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:45:45,0:45:1574:0:0:0,-13.5463,-141.949	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:30:18,12:18:644:12:432:-30.1903,0,-49.2597	0/1:27:19,8:19:645:8:288:-18.1396,0,-50.2364	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:58:58,0:58:2041:0:0:0,-17.4597,-183.958	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:20:20,0:20:697:0:0:0,-6.0206,-63.0483	0/1:45:16,29:16:564:29:1044:-80.7285,0,-37.544	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:58:58,0:58:2052:0:0:0,-17.4597,-184.952	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:20:20,0:20:704:0:0:0,-6.0206,-63.6845	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:120:89,31:89:3166:31:1108:-63.9074,0,-248.911	.:.:.:.:.:.:.:.	0/0:98:98,0:98:3480:0:0:0,-29.5009,-313.411	0/1:117:75,42:75:2638:42:1499:-99.9833,0,-202.445	0/0:46:44,2:44:1559:2:72:0,-7.01066,-133.764	0/1:39:30,9:30:1067:9:320:-17.4022,0,-84.601	0/1:77:50,27:50:1788:27:963:-63.8066,0,-138.023	0/1:113:74,39:74:2606:39:1392:-91.5626,0,-200.773	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:45:31,14:31:1090:14:496:-31.4279,0,-84.8616	0/1:74:50,24:50:1796:24:856:-55.0849,0,-139.645	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:82:50,32:50:1764:32:1133:-77.5922,0,-134.356	0/1:34:20,14:20:705:14:495:-34.648,0,-53.5378	0/1:108:72,36:72:2543:36:1284:-83.3522,0,-196.601	0/0:83:83,0:83:2944:0:0:0,-24.9855,-265.193	0/1:62:43,19:43:1531:19:680:-42.8653,0,-119.418	0/1:69:45,24:45:1585:24:847:-55.7783,0,-122.167	0/1:8:5,3:5:176:3:104:-7.29457,0,-13.7768	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:46:46,0:46:1614:0:0:0,-13.8474,-145.545	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.405	0/0:46:46,0:46:1621:0:0:0,-13.8474,-146.175	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:81:81,0:81:2873:0:0:0,-24.3834,-258.616	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:17:17,0:17:588:0:0:0,-5.11751,-53.2422	0/1:56:40,16:40:1417:16:576:-35.3173,0,-110.968	0/1:28:23,5:23:798:5:176:-7.75618,0,-63.7053	0/0:72:72,0:72:2519:0:0:0,-21.6742,-226.956	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.169
chr06	2192295	.	AC	AG	65360.3	PASS	AB=0.651862;ABP=422.472;AC=146;AF=0.793478;AN=184;AO=3097;CIGAR=1M1X;DP=3835;DPB=3835.5;DPRA=42.1319;EPP=6641.48;EPPR=1583.84;GTI=2;LEN=1;MEANALT=1.10989;MQM=59.9558;MQMR=59.9863;NS=92;NUMALT=1;ODDS=2.33244;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=18;PRO=0.5;QA=110535;QR=25707;RO=728;RPL=3087;RPP=6641.48;RPPR=1583.84;RPR=10;RUN=1;SAF=0;SAP=6728.06;SAR=3097;SRF=0;SRP=1583.84;SRR=728;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:84:31,52:31:1091:52:1856:-141.975,0,-73.153	0/1:49:31,18:31:1108:18:640:-43.1788,0,-85.2807	1/1:74:0,74:0:0:74:2634:-237.305,-22.2762,0	0/1:11:6,5:6:205:5:180:-13.2407,0,-15.4723	0/1:15:7,8:7:250:8:288:-21.752,0,-18.3312	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:56:24,32:24:864:32:1140:-86.0515,0,-61.2111	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	1/1:14:0,14:0:0:14:492:-44.6049,-4.21442,0	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	1/1:18:0,18:0:0:18:626:-56.6625,-5.41854,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:24:0,24:0:0:24:846:-76.449,-7.22472,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:69:14,55:14:498:55:1980:-157.703,0,-24.3843	0/1:50:21,29:21:729:29:1040:-78.8629,0,-50.8779	0/1:52:16,36:16:576:36:1288:-100.57,0,-36.5214	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	0/1:20:2,18:2:72:18:639:-51.8176,0,-0.816122	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:158:41,117:41:1472:117:4173:-328.189,0,-85.2136	1/1:69:0,68:0:0:68:2424:-218.166,-20.47,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:95:44,51:44:1567:51:1828:-136.203,0,-112.723	0/1:65:26,39:26:901:39:1400:-106.732,0,-61.8339	1/1:74:1,73:1:36:73:2597:-230.375,-18.6779,0	.:.:.:.:.:.:.:.	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:88:33,55:33:1170:55:1972:-151.264,0,-79.1156	0/1:107:20,87:20:699:87:3120:-248.816,0,-31.0214	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:45:0,44:0:0:44:1564:-140.849,-13.2453,0	1/1:25:0,25:0:0:25:885:-79.9665,-7.52575,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:30:12,18:12:419:18:639:-48.8073,0,-29.0115	0/1:27:8,18:8:284:18:648:-50.4653,0,-17.7175	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:58:0,58:0:0:58:2065:-186.119,-17.4597,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:19:0,19:0:0:19:679:-61.4371,-5.71957,0	0/1:45:29,16:29:1042:16:576:-38.6286,0,-80.5483	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:58:0,58:0:0:58:2074:-186.93,-17.4597,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:25:0,25:0:0:25:892:-80.5915,-7.52575,0	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:117:31,84:31:1079:84:2998:-235.127,0,-62.4899	.:.:.:.:.:.:.:.	1/1:101:0,101:0:0:101:3590:-323.306,-30.404,0	0/1:119:44,75:44:1545:75:2696:-207.061,0,-103.515	1/1:48:2,46:2:72:46:1633:-140.42,-7.61272,0	0/1:38:8,30:8:282:30:1080:-86.0741,0,-14.2823	0/1:78:27,51:27:957:51:1824:-140.961,0,-62.9646	0/1:118:40,78:40:1414:78:2785:-215.368,0,-92.0337	1/1:18:0,17:0:0:17:608:-54.6923,-5.11751,0	0/1:46:15,30:15:525:30:1063:-82.0748,0,-33.6725	0/1:76:25,51:25:862:51:1814:-140.663,0,-55.0129	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:84:33,51:33:1153:51:1824:-139.155,0,-78.7863	0/1:36:15,21:15:536:21:752:-57.1692,0,-37.7379	0/1:110:38,71:38:1342:71:2497:-191.763,0,-87.9056	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	0/1:59:19,40:19:651:40:1420:-110.336,0,-41.1465	0/1:69:25,44:25:885:44:1572:-120.942,0,-59.1388	0/1:8:3,5:3:106:5:165:-12.7654,0,-7.48086	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:45:0,45:0:0:45:1599:-144.199,-13.5464,0	1/1:61:0,61:0:0:61:2166:-195.175,-18.3628,0	1/1:48:0,47:0:0:47:1666:-149.866,-14.1484,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:13:0,13:0:0:13:459:-41.6441,-3.91339,0	1/1:82:0,82:0:0:82:2939:-264.373,-24.6845,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:32:0,32:0:0:32:1144:-103.269,-9.63296,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:56:16,40:16:561:40:1421:-111.328,0,-33.9605	0/1:28:5,23:5:178:23:809:-64.6995,0,-7.93981	1/1:76:0,76:0:0:76:2695:-242.791,-22.8783,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0
chr06	2209941	.	TGGT	AGGG,AGGT	200144	PASS	AB=0.569649,0.426932;ABP=520.557,572.622;AC=95,93;AF=0.505319,0.494681;AN=188;AO=7000,5244;CIGAR=1X2M1X,1X3M;DP=12286;DPB=12286;DPRA=0,44.0251;EPP=15203.3,11390.2;EPPR=18.2106;GTI=1;LEN=4,1;MEANALT=2.3617,2.37634;MQM=29.9313,58.9756;MQMR=60;NS=94;NUMALT=2;ODDS=98.2798;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=246070,187196;QR=211;RO=7;RPL=7000,5244;RPP=15203.3,11390.2;RPPR=18.2106;RPR=0,0;RUN=1,1;SAF=0,0;SAP=15203.3,11390.2;SAR=7000,5244;SRF=0;SRP=18.2106;SRR=7;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:61:0,36,25:0:0:36,25:1269,896:-155.37,-73.3988,-62.5617,-82.3004,0,-74.7747	1/2:160:0,103,57:0:0:103,57:3623,2028:-400.599,-165.619,-134.613,-235.31,0,-218.152	1/2:166:0,79,87:0:0:79,87:2725,3104:-431.556,-253.32,-229.539,-178.554,0,-152.365	1/2:200:0,104,94:0:0:104,94:3634,3368:-510.967,-274.313,-243.005,-236.655,0,-208.358	1/2:64:0,25,39:0:0:25,39:894,1400:-172.196,-114.559,-107.033,-57.9536,0,-46.2135	1/2:25:0,15,10:0:0:15,10:535,360:-64.2609,-29.734,-25.2186,-34.8586,0,-31.8483	1/2:184:0,117,66:0:0:117,66:4101,2350:-458.042,-191.247,-156.026,-266.875,0,-247.007	1/2:136:0,61,75:0:0:61,75:2143,2683:-357.38,-219.007,-200.644,-138.691,0,-116.114	1/2:88:0,47,41:0:0:47,41:1667,1460:-227.254,-119.318,-105.17,-108.26,0,-95.9179	1/2:113:0,55,57:0:0:55,57:1925,2032:-290.975,-165.647,-149.091,-125.358,0,-108.199	1/2:139:0,65,74:0:0:65,74:2240,2626:-361.315,-214.287,-194.72,-147.345,0,-125.069	1/2:173:0,93,79:0:0:93,79:3285,2819:-442.424,-229.82,-201.824,-212.638,0,-188.857	1/2:136:0,75,61:0:0:75,61:2661,2163:-347.095,-176.535,-153.958,-170.884,0,-152.522	1/2:153:0,66,87:0:0:66,87:2325,3094:-403.135,-252.432,-232.564,-151.02,0,-124.83	1/2:169:0,105,64:0:0:105,64:3687,2279:-423.545,-185.518,-153.91,-238.355,0,-219.089	1/2:89:0,43,46:0:0:43,46:1500,1652:-232.938,-135.107,-122.163,-98.1521,0,-84.3047	1/2:196:0,99,95:0:0:99,95:3460,3400:-502.298,-277.253,-247.451,-225.107,0,-196.509	1/2:161:0,97,64:0:0:97,64:3428,2269:-406.978,-185.13,-155.93,-222.176,0,-202.91	1/2:127:0,79,48:0:0:79,48:2788,1715:-319.889,-140.14,-116.358,-180.079,0,-165.63	1/2:222:0,108,112:0:0:108,112:3797,4019:-574.305,-327.593,-295.082,-246.681,0,-212.965	1/2:138:1,67,70:1:25:67,70:2379,2472:-352.961,-199.415,-181.194,-151.968,0,-132.844	1/2:98:0,71,27:0:0:71,27:2436,968:-239.683,-79.2859,-57.9128,-160.735,0,-152.607	1/2:65:0,44,21:0:0:44,21:1524,756:-161.908,-62.0408,-48.7954,-100.203,0,-93.8814	1/2:103:0,42,61:0:0:42,61:1460,2175:-272.406,-177.607,-164.964,-95.1123,0,-76.7494	1/2:49:0,22,27:0:0:22,27:772,972:-129.89,-79.6621,-73.0395,-50.5473,0,-42.4195	1/2:390:0,252,138:0:0:252,138:8836,4914:-974.934,-400.417,-324.558,-574.848,0,-533.306	1/2:218:0,134,83:0:0:134,83:4747,2941:-546.257,-239.391,-199.053,-306.84,0,-281.855	1/2:84:0,55,29:0:0:55,29:1946,1032:-209.872,-84.4498,-67.8931,-125.754,0,-117.024	1/2:234:0,127,105:0:0:127,105:4496,3760:-596.739,-306.461,-268.23,-290.25,0,-258.642	1/2:98:0,75,23:0:0:75,23:2626,801:-235.619,-65.2124,-42.6351,-170.739,0,-163.815	1/2:149:1,97,49:1:28:97,49:3415,1752:-361.824,-140.612,-113.629,-219.319,0,-206.787	1/2:8:0,3,5:0:0:3,5:108,180:-21.9098,-15.0011,-14.098,-7.22465,0,-5.7195	1/2:9:0,2,7:0:0:2,7:72,252:-25.5292,-20.9217,-20.3197,-4.91319,0,-2.80598	1/2:17:0,10,7:0:0:10,7:360,237:-42.6389,-19.5526,-16.5423,-23.4049,0,-21.2976	1/2:13:0,6,7:0:0:6,7:207,244:-33.7895,-20.1922,-18.386,-13.9119,0,-11.8047	1/2:17:0,5,12:0:0:5,12:173,428:-46.5235,-35.2179,-33.7127,-11.6117,0,-7.9993	1/2:337:1,175,160:1:27:175,160:6142,5748:-865.37,-466.68,-416.128,-396.906,0,-350.87	1/2:195:0,139,56:0:0:139,56:4870,2012:-481.512,-164.45,-122.606,-317.401,0,-300.543	1/2:229:0,158,71:0:0:158,71:5578,2532:-566.977,-206.452,-158.89,-360.859,0,-339.486	1/1:3:0,3,0:0:0:3,0:106,0:-8.08277,-0.90309,0,-8.08277,-0.90309,-8.08277	1/2:138:0,79,58:0:0:79,58:2781,2084:-350.386,-169.993,-146.212,-180.367,0,-162.907	1/2:111:0,76,34:0:0:76,34:2688,1220:-273.241,-99.5703,-76.6921,-173.716,0,-163.481	1/2:118:0,49,69:0:0:49,69:1714,2462:-311.148,-200.698,-185.948,-110.764,0,-89.993	1/2:125:0,53,72:0:0:53,72:1868,2580:-330.904,-210.67,-194.715,-120.551,0,-98.8766	1/2:122:0,71,50:0:0:71,50:2491,1767:-304.667,-143.867,-122.494,-160.771,0,-145.719	1/2:74:0,37,37:0:0:37,37:1321,1316:-192.761,-107.556,-96.4183,-85.5274,0,-74.3893	1/2:89:0,45,44:0:0:45,44:1580,1561:-230.437,-127.533,-113.986,-103.226,0,-89.9808	1/2:158:0,91,66:0:0:91,66:3184,2364:-399.26,-192.75,-165.356,-206.551,0,-186.683	1/2:154:0,87,67:0:0:87,67:3084,2404:-396.81,-195.708,-169.519,-201.43,0,-181.261	1/2:129:0,60,69:0:0:60,69:2114,2460:-338.2,-200.712,-182.65,-137.808,0,-117.037	1/2:141:0,88,53:0:0:88,53:3108,1888:-355.782,-154.22,-127.729,-201.893,0,-185.938	1/2:10:1,3,6:1:29:3,6:106,193:-19.5851,-13.0044,-14.4062,-4.58106,0,-5.08386	1/2:140:0,81,59:0:0:81,59:2854,2102:-355.122,-171.299,-146.916,-184.148,0,-166.388	1/2:56:0,44,12:0:0:44,12:1536,432:-135.484,-35.4868,-22.2415,-100.34,0,-96.728	1/2:13:0,7,6:0:0:7,6:243,212:-33.2949,-17.6152,-15.508,-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chr06	2230332	.	CAA	TAG,AAA	102749	PASS	AB=0.581948,0.416152;ABP=125.794,131.554;AC=143,45;AF=0.760638,0.239362;AN=188;AO=5101,896;CIGAR=1X1M1X,1X2M;DP=6008;DPB=6008;DPRA=15.2029,0.878415;EPP=11079.7,1948.65;EPPR=5.18177;GTI=10;LEN=3,1;MEANALT=1.57143,2.04348;MQM=31.079,45;MQMR=60;NS=94;NUMALT=2;ODDS=2964.24;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=181170,32013;QR=36;RO=1;RPL=0,0;RPP=11079.7,1948.65;RPPR=5.18177;RPR=5101,896;RUN=1,1;SAF=5101,896;SAP=11079.7,1948.65;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:45:0,38,7:0:0:38,7:1345,252:-112.621,-20.7204,-9.28125,-92.2486,0,-90.1414	1/1:39:0,39,0:0:0:39,0:1361,0:-105.428,-11.7402,0,-105.428,-11.7402,-105.428	1/2:142:0,85,54:0:0:85,54:3006,1941:-359.422,-156.628,-131.04,-202.82,0,-186.564	1/1:155:0,153,1:0:0:153,1:5443,36:-416.068,-46.0576,0,-413.159,-43.0888,-412.858	1/2:47:0,34,13:0:0:34,13:1194,460:-119.357,-37.5049,-27.2699,-82.189,0,-78.2756	1/2:36:0,18,18:0:0:18,18:648,648:-96.5606,-52.5207,-47.1021,-44.3704,0,-38.9519	1/1:10:0,10,0:0:0:10,0:353,0:-27.5459,-3.0103,0,-27.5459,-3.0103,-27.5459	1/2:130:0,89,41:0:0:89,41:3148,1471:-331.848,-118.496,-91.7046,-213.689,0,-201.346	1/2:84:0,49,35:0:0:49,35:1731,1252:-219.128,-101.449,-86.6985,-118.011,0,-107.474	1/2:59:0,28,31:0:0:28,31:996,1112:-158.236,-90.1953,-81.7665,-68.3688,0,-59.0369	1/2:12:0,7,5:0:0:7,5:247,176:-30.8812,-14.2879,-12.1807,-16.9174,0,-15.4122	1/1:54:0,54,0:0:0:54,0:1901,0:-144.887,-16.2556,0,-144.887,-16.2556,-144.887	1/2:51:0,22,28:0:0:22,28:781,978:-132.216,-78.7951,-72.1724,-53.3881,0,-44.9592	1/2:9:0,6,3:0:0:6,3:214,108:-23.6772,-9.08398,-7.2778,-14.9325,0,-14.0294	1/1:53:0,53,0:0:0:53,0:1904,0:-145.017,-15.9546,0,-145.017,-15.9546,-145.017	1/2:31:0,20,11:0:0:20,11:718,396:-81.0596,-32.3289,-26.3083,-49.0687,0,-45.7573	1/1:15:0,15,0:0:0:15,0:536,0:-40.8938,-4.51545,0,-40.8938,-4.51545,-40.8938	1/1:13:0,13,0:0:0:13,0:461,0:-35.3826,-3.91339,0,-35.3826,-3.91339,-35.3826	1/1:8:0,8,0:0:0:8,0:280,0:-21.9963,-2.40824,0,-21.9963,-2.40824,-21.9963	1/1:107:0,107,0:0:0:107,0:3812,0:-291.901,-32.2102,0,-291.901,-32.2102,-291.901	1/2:94:0,38,56:0:0:38,56:1343,2008:-253.278,-162.416,-150.977,-91.1839,0,-74.3262	1/1:156:0,156,0:0:0:156,0:5539,0:-369.793,-46.9607,0,-369.793,-46.9607,-369.793	1/2:88:0,47,41:0:0:47,41:1659,1476:-233.59,-119.602,-105.454,-114.319,0,-101.977	1/2:61:0,42,19:0:0:42,19:1495,669:-156.196,-54.273,-41.6297,-102.258,0,-96.5381	1/2:103:0,64,39:0:0:64,39:2247,1404:-268.036,-113.812,-94.5457,-154.56,0,-142.82	1/1:198:0,197,0:0:0:197,0:6978,0:-467.755,-59.3029,0,-467.755,-59.3029,-467.755	1/1:217:0,216,1:0:0:216,1:7652,36:-587.587,-65.0225,0,-584.678,-61.7567,-584.377	1/1:11:0,11,0:0:0:11,0:386,0:-30.1211,-3.31133,0,-30.1211,-3.31133,-30.1211	1/2:147:0,82,65:0:0:82,65:2916,2314:-347.856,-177.697,-153.012,-170.464,0,-150.897	1/2:68:0,36,32:0:0:36,32:1296,1144:-180.379,-92.2744,-81.4373,-88.4354,0,-78.8024	1/1:66:0,66,0:0:0:66,0:2368,0:-181.504,-19.868,0,-181.504,-19.868,-181.504	1/2:3:0,2,1:0:0:2,1:72,36:-8.09909,-3.23509,-2.63303,-5.20156,0,-4.90053	1/1:16:0,16,0:0:0:16,0:576,0:-44.2908,-4.81648,0,-44.2908,-4.81648,-44.2908	2/2:5:0,0,5:0:0:0,5:0,165:-15.0569,-15.0569,-15.0569,-1.50515,-1.50515,0	2/2:3:0,0,3:0:0:0,3:0,108:-9.89905,-9.89905,-9.89905,-0.90309,-0.90309,0	1/1:4:0,4,0:0:0:4,0:144,0:-11.3018,-1.20412,0,-11.3018,-1.20412,-11.3018	1/2:86:0,49,37:0:0:49,37:1737,1313:-202.037,-101.106,-86.3559,-101.235,0,-90.0973	1/1:212:0,212,0:0:0:212,0:7510,0:-575.228,-63.8184,0,-575.228,-63.8184,-575.228	1/1:10:0,10,0:0:0:10,0:358,0:-27.7354,-3.0103,0,-27.7354,-3.0103,-27.7354	1/1:5:0,5,0:0:0:5,0:175,0:-13.8592,-1.50515,0,-13.8592,-1.50515,-13.8592	1/1:83:0,83,0:0:0:83,0:2966,0:-227.163,-24.9855,0,-227.163,-24.9855,-227.163	1/1:14:0,14,0:0:0:14,0:502,0:-38.7851,-4.21442,0,-38.7851,-4.21442,-38.7851	1/2:78:0,46,32:0:0:46,32:1635,1122:-200.569,-90.7312,-76.8839,-110.165,0,-100.532	1/2:23:0,11,12:0:0:11,12:394,428:-61.6452,-34.9204,-31.6091,-27.0523,0,-23.4399	1/2:23:0,17,6:0:0:17,6:610,216:-59.3299,-17.8113,-12.6938,-41.8618,0,-40.0556	1/2:73:0,37,36:0:0:37,36:1305,1283:-175.36,-98.4544,-87.3163,-77.206,0,-66.3689	1/2:87:0,57,30:0:0:57,30:2023,1080:-225.988,-87.602,-70.4433,-138.724,0,-129.693	1/1:165:0,165,0:0:0:165,0:5851,0:-447.527,-49.67,0,-447.527,-49.67,-447.527	1/1:92:0,92,0:0:0:92,0:3265,0:-249.991,-27.6948,0,-249.991,-27.6948,-249.991	1/2:34:0,14,20:0:0:14,20:500,720:-92.6696,-58.5387,-54.3243,-34.4569,0,-28.4363	1/2:104:0,59,45:0:0:59,45:2084,1612:-246.935,-123.292,-105.532,-123.949,0,-110.403	1/2:2:0,1,1:0:0:1,1:34,36:-4.57873,-3.26578,-2.96475,-1.58562,0,-1.28459	1/1:106:0,106,0:0:0:106,0:3785,0:-288.799,-31.9092,0,-288.799,-31.9092,-288.799	1/1:29:0,29,0:0:0:29,0:1030,0:-69.6107,-8.72987,0,-69.6107,-8.72987,-69.6107	1/2:3:0,2,1:0:0:2,1:72,36:-8.12774,-3.26578,-2.66372,-5.20156,0,-4.90053	1/2:76:0,39,37:0:0:39,37:1390,1324:-201.976,-107.068,-95.3274,-95.2376,0,-84.0994	1/1:69:0,69,0:0:0:69,0:2452,0:-187.884,-20.7711,0,-187.884,-20.7711,-187.884	1/2:5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chr06	2235821	.	G	T	130876	PASS	AB=0.446089;ABP=81.444;AC=142;AF=0.771739;AN=184;AO=6041;CIGAR=1X;DP=7780;DPB=7780;DPRA=85.4835;EPP=13120.9;EPPR=3774.86;GTI=2;LEN=1;MEANALT=1.02198;MQM=44.0566;MQMR=59.909;NS=92;NUMALT=1;ODDS=0.850734;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214997;QR=58900;RO=1737;RPL=172;RPP=11669.4;RPPR=3774.86;RPR=5869;RUN=1;SAF=172;SAP=11669.4;SAR=5869;SRF=0;SRP=3774.86;SRR=1737;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:21,10:21:720:10:356:-22.2295,0,-55.7838	1/1:102:0,102:0:0:102:3642:-319.277,-30.7051,0	0/1:87:67,20:67:2326:20:708:-36.0974,0,-183.412	1/1:213:1,212:1:36:212:7548:-659.325,-60.5211,0	0/1:91:44,47:44:1491:47:1667:-120.202,0,-107.081	0/1:41:32,9:32:1100:9:316:-16.2281,0,-86.9577	1/1:128:0,128:0:0:128:4579:-399.833,-38.5318,0	0/1:74:53,21:53:1818:21:756:-43.7448,0,-141.617	0/1:78:55,23:55:1874:23:828:-49.1217,0,-145.451	0/1:141:69,72:69:2357:72:2575:-186.532,0,-169.938	0/1:22:10,12:10:327:12:397:-27.5999,0,-23.1257	1/1:34:0,34:0:0:34:1212:-106.043,-10.235,0	0/1:35:29,6:29:982:6:212:-8.42091,0,-78.1328	0/1:44:20,24:20:649:24:860:-61.8577,0,-45.4696	1/1:44:0,44:0:0:44:1550:-133.492,-13.2453,0	0/1:45:22,23:22:724:23:820:-57.7919,0,-51.9186	1/1:23:0,23:0:0:23:828:-72.9426,-6.92369,0	1/1:15:0,15:0:0:15:536:-47.1828,-4.51545,0	1/1:14:0,14:0:0:14:491:-43.323,-4.21442,0	1/1:171:0,171:0:0:171:6080:-531.545,-51.4761,0	0/1:141:74,67:74:2483:67:2378:-168.714,0,-181.275	1/1:146:1,145:1:36:145:5155:-449.964,-40.3521,0	0/1:112:72,40:72:2475:40:1424:-92.074,0,-189.279	0/1:149:67,82:67:2288:82:2898:-211.158,0,-161.323	0/1:75:48,27:48:1622:27:960:-60.8733,0,-123.687	1/1:357:1,356:1:32:356:12654:-1117.37,-104.268,0	1/1:156:0,156:0:0:156:5571:-490.728,-46.9607,0	1/1:20:0,20:0:0:20:720:-62.5112,-6.0206,0	0/1:274:137,137:137:4645:137:4891:-349.767,0,-335.742	0/1:131:60,71:60:2000:71:2527:-185.17,0,-140.831	1/1:120:1,119:1:36:119:4220:-366.691,-32.5253,0	1/1:5:0,5:0:0:5:180:-16.482,-1.50515,0	1/1:11:0,11:0:0:11:392:-33.0795,-3.31133,0	.:.:.:.:.:.:.:.	0/1:10:5,5:5:172:5:176:-11.5314,0,-12.8077	1/1:2:0,2:0:0:2:72:-6.65513,-0.60206,0	0/1:107:59,48:59:1927:48:1712:-118.061,0,-141.488	1/1:211:0,211:0:0:211:7556:-667.185,-63.5173,0	1/1:19:0,19:0:0:19:672:-59.1875,-5.71957,0	0/1:2:1,1:1:36:1:32:-2.55657,0,-2.99621	1/1:127:0,127:0:0:127:4529:-398.624,-38.2308,0	1/1:14:0,14:0:0:14:504:-43.2703,-4.21442,0	0/1:128:61,67:61:2069:67:2388:-171.944,0,-147.941	0/1:44:21,23:21:705:23:816:-58.1384,0,-50.5173	0/1:30:19,11:19:569:11:396:-25.2692,0,-42.4656	0/1:101:55,46:55:1849:46:1630:-114.517,0,-136.27	0/1:85:60,25:60:2072:25:896:-53.2624,0,-161.16	1/1:183:0,183:0:0:183:6526:-569.697,-55.0885,0	1/1:128:0,128:0:0:128:4553:-400.523,-38.5318,0	0/1:185:105,80:105:3559:80:2851:-195.709,0,-264.826	0/1:179:103,76:103:3559:76:2678:-181.118,0,-266.639	0/1:4:1,3:1:27:3:108:-8.48854,0,-1.49566	1/1:89:0,89:0:0:89:3196:-280.218,-26.7917,0	1/1:48:0,48:0:0:48:1683:-150.23,-14.4494,0	0/1:7:6,1:6:208:1:36:-1.39549,0,-16.9519	0/1:126:71,55:71:2459:55:1950:-133.492,0,-183.6	1/1:57:0,57:0:0:57:2040:-180.148,-17.1587,0	.:.:.:.:.:.:.:.	0/1:14:3,11:3:108:11:396:-30.97,0,-5.86075	0/1:69:36,33:36:1249:33:1184:-82.6855,0,-91.9388	1/1:73:1,72:1:36:72:2579:-221.816,-18.3769,0	0/1:4:3,1:3:104:1:36:-2.37465,0,-8.49869	1/1:233:0,233:0:0:233:8308:-733.039,-70.14,0	1/1:213:6,207:6:212:207:7361:-628.441,-44.6946,0	1/1:62:0,62:0:0:62:2216:-196.334,-18.6639,0	1/1:63:0,63:0:0:63:2233:-193.926,-18.9649,0	1/1:185:2,183:2:57:183:6505:-566.518,-50.2772,0	1/1:129:0,129:0:0:129:4584:-403.814,-38.8329,0	1/1:14:0,14:0:0:14:504:-43.8992,-4.21442,0	1/1:55:0,55:0:0:55:1951:-171.071,-16.5567,0	1/1:51:0,50:0:0:50:1781:-155.246,-15.0515,0	0/1:28:11,17:11:374:17:595:-44.5491,0,-25.5552	1/1:112:0,112:0:0:112:3983:-349.39,-33.7154,0	0/1:49:25,24:25:867:24:860:-61.0739,0,-63.5943	0/1:171:89,82:89:3020:82:2897:-204.28,0,-220.546	1/1:118:0,118:0:0:118:4154:-365.809,-35.5215,0	1/1:79:0,79:0:0:79:2814:-247.676,-23.7814,0	1/1:63:0,63:0:0:63:2243:-196.162,-18.9649,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:97:0,97:0:0:97:3456:-305.872,-29.1999,0	1/1:67:0,67:0:0:67:2404:-210.419,-20.169,0	1/1:184:0,183:0:0:183:6521:-572.252,-55.0885,0	1/1:85:0,85:0:0:85:3009:-261.492,-25.5876,0	1/1:34:0,34:0:0:34:1216:-106.061,-10.235,0	0/1:60:33,27:33:1078:27:964:-66.651,0,-79.2495	1/1:77:1,76:1:32:76:2697:-231.087,-19.98,0	0/1:21:11,10:11:380:10:356:-25.2473,0,-28.2103	1/1:20:0,20:0:0:20:712:-62.7927,-6.0206,0	1/1:22:0,22:0:0:22:780:-67.5609,-6.62266,0	1/1:15:0,15:0:0:15:536:-46.1215,-4.51545,0	0/1:60:28,32:28:942:32:1140:-82.2559,0,-67.0069	0/1:52:35,17:35:1137:17:599:-37.2035,0,-86.9676	1/1:131:1,130:1:36:130:4609:-399.842,-35.8367,0	1/1:53:0,53:0:0:53:1883:-164.174,-15.9546,0
chr06	2239418	.	CTT	TTC,TTT	177141	PASS	AB=0.506472,0.491205;ABP=4.10649,5.03475;AC=141,47;AF=0.75,0.25;AN=188;AO=6660,1521;CIGAR=1X1M1X,1X2M;DP=8205;DPB=8205;DPRA=44.1022,1.08397;EPP=14395.6,3279.81;EPPR=0;GTI=8;LEN=3,1;MEANALT=1.8172,2.24528;MQM=59.9647,59.9895;MQMR=0;NS=94;NUMALT=2;ODDS=0.0931498;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=235061,54289;QR=0;RO=0;RPL=8,3;RPP=14395.6,3279.81;RPPR=0;RPR=6652,1518;RUN=1,1;SAF=6660,1521;SAP=14465,3305.82;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:31:0,13,18:0:0:13,18:459,644:-90.2483,-52.8721,-48.9587,-37.7312,0,-32.3126	1/1:101:0,100,0:0:0:100,0:3536,0:-318.239,-30.103,0,-318.239,-30.103,-318.239	1/2:119:0,65,53:0:0:65,53:2270,1879:-337.792,-153.15,-133.583,-184.712,0,-168.757	1/1:130:0,128,1:0:0:128,1:4502,36:-405.038,-38.5318,0,-402.1,-35.5495,-401.799	1/2:47:0,27,20:0:0:27,20:952,716:-136.258,-58.7471,-50.6193,-77.8665,0,-71.8459	1/2:113:0,59,53:0:0:59,53:2094,1885:-324.226,-153.612,-135.851,-170.609,0,-154.654	1/1:121:0,121,0:0:0:121,0:4286,0:-385.92,-36.4246,0,-385.92,-36.4246,-385.92	1/2:175:0,89,86:0:0:89,86:3124,3065:-504.429,-250.189,-223.398,-254.594,0,-228.705	1/2:70:0,42,28:0:0:42,28:1488,985:-201.751,-80.5327,-67.8894,-121.571,0,-113.142	1/2:125:0,69,56:0:0:69,56:2432,2005:-361.871,-163.864,-143.093,-198.363,0,-181.505	1/2:38:0,13,25:0:0:13,25:467,899:-111.802,-73.7052,-69.7918,-38.4558,0,-30.9301	1/1:29:0,29,0:0:0:29,0:1040,0:-93.7841,-8.72987,0,-93.7841,-8.72987,-93.7841	1/2:39:0,26,13:0:0:26,13:925,464:-113.568,-38.1841,-30.3573,-75.7407,0,-71.8273	1/2:34:0,17,17:0:0:17,17:596,612:-98.7899,-50.2959,-45.1784,-48.8491,0,-43.7316	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/2:30:0,14,16:0:0:14,16:486,560:-85.4174,-45.9117,-41.6973,-39.854,0,-35.0375	1/1:39:0,39,0:0:0:39,0:1393,0:-125.668,-11.7402,0,-125.668,-11.7402,-125.668	1/1:38:0,38,0:0:0:38,0:1329,0:-119.908,-11.4391,0,-119.908,-11.4391,-119.908	1/1:31:0,31,0:0:0:31,0:1105,0:-99.7601,-9.33193,0,-99.7601,-9.33193,-99.7601	1/1:325:0,323,1:0:0:323,1:11410,36:-1026.43,-97.2327,0,-1023.49,-94.2953,-1023.19	1/2:108:0,56,51:0:0:56,51:1966,1828:-309.169,-149.167,-132.309,-160.075,0,-144.722	1/1:162:0,162,0:0:0:162,0:5681,0:-511.415,-48.7669,0,-511.415,-48.7669,-511.415	1/2:31:0,12,19:0:0:12,19:421,680:-90.068,-55.8096,-52.1972,-34.6118,0,-28.8922	1/2:130:0,60,70:0:0:60,70:2114,2489:-375.302,-203.19,-185.128,-172.466,0,-151.394	1/2:60:0,32,28:0:0:32,28:1141,1004:-175.256,-82.247,-72.6141,-93.3668,0,-84.938	1/1:400:0,398,1:0:0:398,1:13980,36:-1257.67,-119.81,0,-1254.73,-116.833,-1254.43	1/1:152:0,152,0:0:0:152,0:5388,0:-485.054,-45.7566,0,-485.054,-45.7566,-485.054	1/1:22:0,22,0:0:0:22,0:792,0:-71.4151,-6.62266,0,-71.4151,-6.62266,-71.4151	1/2:268:0,128,139:0:0:128,139:4503,4974:-772.161,-405.606,-367.074,-366.55,0,-324.707	1/2:112:0,49,63:0:0:49,63:1724,2253:-324.405,-184.068,-169.317,-140.692,0,-121.727	1/1:90:0,87,3:0:0:87,3:3077,108:-276.796,-26.1896,0,-267.984,-17.0175,-267.081	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:22:0,20,2:0:0:20,2:693,72:-62.5455,-6.23466,-0.214062,-56.6694,0,-56.0673	1/1:3:0,3,0:0:0:3,0:106,0:-9.8891,-0.90309,0,-9.8891,-0.90309,-9.8891	2/2:2:0,0,2:0:0:0,2:0,68:-6.45771,-6.45771,-6.45771,-0.60206,-0.60206,0	1/1:5:0,5,0:0:0:5,0:178,0:-16.3686,-1.50515,0,-16.3686,-1.50515,-16.3686	1/2:123:0,54,69:0:0:54,69:1920,2444:-355.908,-199.442,-183.187,-156.82,0,-136.049	1/1:198:0,196,0:0:0:196,0:6869,0:-618.042,-59.0019,0,-618.042,-59.0019,-618.042	1/1:28:0,28,0:0:0:28,0:998,0:-90.1347,-8.42884,0,-90.1347,-8.42884,-90.1347	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:155:0,155,0:0:0:155,0:5496,0:-494.769,-46.6597,0,-494.769,-46.6597,-494.769	1/1:15:0,15,0:0:0:15,0:524,0:-47.4885,-4.51545,0,-47.4885,-4.51545,-47.4885	1/2:164:0,83,81:0:0:83,81:2945,2900:-476.796,-236.852,-211.867,-240.3,0,-215.916	1/2:33:0,16,17:0:0:16,17:574,608:-96.7543,-49.9345,-45.118,-47.1778,0,-42.0603	1/2:21:0,13,8:0:0:13,8:459,288:-61.2335,-23.8592,-19.9458,-37.7316,0,-35.3233	1/2:101:0,55,44:0:0:55,44:1950,1565:-286.526,-127.659,-111.102,-158.985,0,-145.739	1/2:127:0,62,65:0:0:62,65:2217,2301:-368.558,-187.783,-169.119,-181.13,0,-161.563	1/1:205:0,202,2:0:0:202,2:7169,72:-644.96,-60.8081,0,-639.086,-54.8333,-638.484	1/1:175:0,175,0:0:0:175,0:6116,0:-550.473,-52.6803,0,-550.473,-52.6803,-550.473	1/2:123:0,70,53:0:0:70,53:2482,1896:-357.16,-154.963,-133.891,-202.553,0,-186.598	1/2:145:0,67,78:0:0:67,78:2374,2796:-421.793,-228.4,-208.231,-193.75,0,-170.269	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/1:156:0,155,0:0:0:155,0:5474,0:-492.483,-46.6597,0,-492.483,-46.6597,-492.483	1/1:55:0,55,0:0:0:55,0:1955,0:-176.226,-16.5567,0,-176.226,-16.5567,-176.226	2/2:13:0,1,12:0:0:1,12:36,428:-38.4992,-35.5616,-35.2605,-3.61236,-0.315115,0	1/2:115:0,74,41:0:0:74,41:2623,1468:-333.758,-120.074,-97.7976,-214.041,0,-201.699	1/1:42:0,42,0:0:0:42,0:1474,0:-132.895,-12.6433,0,-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chr06	2258145	.	GCCA	ACCG,ACCA	86244.8	PASS	AB=0.491304,0.506832;ABP=4.06771,3.66309;AC=143,43;AF=0.768817,0.231183;AN=186;AO=3237,819;CIGAR=1X2M1X,1X3M;DP=4069;DPB=4069;DPRA=44.2174,0.810519;EPP=7032.07,1781.45;EPPR=0;GTI=3;LEN=4,1;MEANALT=1.59783,2.04545;MQM=45.126,59.0366;MQMR=0;NS=93;NUMALT=2;ODDS=0.670576;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=114947,29344;QR=0;RO=0;RPL=3237,819;RPP=7032.07,1781.45;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=7032.07,1781.45;SAR=3237,819;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:49:0,14,35:0:0:14,35:501,1256:-142.929,-102.547,-98.333,-40.7362,0,-30.2001	1/1:70:0,69,0:0:0:69,0:2464,0:-215.345,-20.7711,0,-215.345,-20.7711,-215.345	1/2:45:0,23,22:0:0:23,22:818,792:-130.88,-64.983,-58.0593,-66.2531,0,-59.6304	1/1:55:0,55,0:0:0:55,0:1947,0:-171.084,-16.5567,0,-171.084,-16.5567,-171.084	1/2:32:0,5,27:0:0:5,27:174,972:-93.586,-79.6251,-78.12,-14.3071,0,-6.17929	1/2:26:0,8,18:0:0:8,18:287,644:-76.0083,-52.8721,-50.4638,-23.4919,0,-18.0734	1/1:53:0,53,0:0:0:53,0:1887,0:-167.528,-15.9546,0,-167.528,-15.9546,-167.528	1/2:55:0,23,32:0:0:23,32:822,1148:-159.537,-93.6948,-86.7711,-66.1965,0,-56.5635	1/2:65:0,29,36:0:0:29,36:1038,1292:-189.378,-105.735,-97.0052,-83.9993,0,-73.1622	1/2:51:0,36,15:0:0:36,15:1262,531:-144.001,-43.5564,-32.7194,-100.795,0,-96.2798	1/2:22:0,10,12:0:0:10,12:355,432:-64.0344,-35.604,-32.5937,-28.7845,0,-25.1722	1/1:37:0,36,0:0:0:36,0:1276,0:-112.938,-10.8371,0,-112.938,-10.8371,-112.938	1/2:55:0,24,31:0:0:24,31:864,1108:-159.966,-90.6632,-83.4385,-69.6586,0,-60.3267	1/2:42:0,20,22:0:0:20,22:711,792:-121.913,-64.7924,-58.7718,-57.4757,0,-50.853	1/1:40:0,40,0:0:0:40,0:1413,0:-125.391,-12.0412,0,-125.391,-12.0412,-125.391	1/2:17:0,9,8:0:0:9,8:313,288:-48.4982,-23.8592,-21.1499,-24.9885,0,-22.5802	1/1:39:0,39,0:0:0:39,0:1382,0:-122.668,-11.7402,0,-122.668,-11.7402,-122.668	1/1:45:0,45,0:0:0:45,0:1607,0:-142.992,-13.5464,0,-142.992,-13.5464,-142.992	1/1:20:0,20,0:0:0:20,0:719,0:-64.3339,-6.0206,0,-64.3339,-6.0206,-64.3339	1/1:41:0,40,1:0:0:40,1:1430,32:-126.541,-12.0412,0,-123.964,-9.14292,-123.663	1/2:52:0,26,25:0:0:26,25:908,891:-145.162,-72.6291,-64.8024,-72.6084,0,-65.0826	1/1:48:0,48,0:0:0:48,0:1697,0:-151.443,-14.4494,0,-151.443,-14.4494,-151.443	1/2:36:0,14,22:0:0:14,22:503,788:-104.561,-64.5924,-60.378,-40.3221,0,-33.6994	1/2:56:0,49,7:0:0:49,7:1738,252:-158.448,-20.9217,-6.17128,-137.884,0,-135.777	1/2:55:0,14,41:0:0:14,41:496,1459:-158.618,-119.173,-114.959,-39.7934,0,-27.4511	1/1:124:0,123,0:0:0:123,0:4346,0:-385.458,-37.0267,0,-385.458,-37.0267,-385.458	1/1:93:0,93,0:0:0:93,0:3309,0:-293.565,-27.9958,0,-293.565,-27.9958,-293.565	1/1:21:0,21,0:0:0:21,0:746,0:-66.6212,-6.32163,0,-66.6212,-6.32163,-66.6212	1/2:57:0,22,34:0:0:22,34:778,1224:-162.689,-99.9161,-93.2935,-62.8099,0,-52.5748	1/2:31:0,11,20:0:0:11,20:390,720:-90.4177,-59.1082,-55.7968,-31.6629,0,-25.6423	1/1:53:0,53,0:0:0:53,0:1852,0:-163.576,-15.9546,0,-163.576,-15.9546,-163.576	1/2:7:0,4,3:0:0:4,3:144,108:-20.7398,-9.17208,-7.96796,-11.9254,0,-11.0223	1/1:10:0,10,0:0:0:10,0:353,0:-31.242,-3.0103,0,-31.242,-3.0103,-31.242	.:.:.:.:.:.:.:.	1/1:2:0,2,0:0:0:2,0:72,0:-6.76137,-0.60206,0,-6.76137,-0.60206,-6.76137	1/1:10:0,10,0:0:0:10,0:354,0:-31.8746,-3.0103,0,-31.8746,-3.0103,-31.8746	1/2:120:0,49,71:0:0:49,71:1752,2547:-349.126,-207.604,-192.853,-141.877,0,-120.504	1/1:70:0,70,0:0:0:70,0:2485,0:-220.579,-21.0721,0,-220.579,-21.0721,-220.579	1/1:34:0,34,0:0:0:34,0:1181,0:-105.543,-10.235,0,-105.543,-10.235,-105.543	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:51:0,51,0:0:0:51,0:1815,0:-161.02,-15.3525,0,-161.02,-15.3525,-161.02	1/1:27:0,27,0:0:0:27,0:963,0:-85.8255,-8.12781,0,-85.8255,-8.12781,-85.8255	1/2:57:0,19,38:0:0:19,38:672,1360:-164.836,-110.936,-105.217,-54.2514,0,-42.8123	1/2:63:0,49,14:0:0:49,14:1752,504:-182.241,-41.4784,-26.7279,-141.121,0,-136.907	1/2:29:0,17,12:0:0:17,12:607,432:-83.9194,-35.6048,-30.4873,-48.6701,0,-45.0577	1/2:65:0,32,33:0:0:32,33:1132,1188:-187.577,-97.2662,-87.6332,-90.6645,0,-80.7305	1/2:42:0,20,22:0:0:20,22:711,783:-121.366,-64.0985,-58.0779,-57.6206,0,-50.9979	1/1:53:0,53,0:0:0:53,0:1888,0:-166.538,-15.9546,0,-166.538,-15.9546,-166.538	1/1:74:0,73,0:0:0:73,0:2611,0:-231.19,-21.9752,0,-231.19,-21.9752,-231.19	1/2:31:0,20,11:0:0:20,11:715,392:-89.2007,-32.2149,-26.1943,-57.3392,0,-54.0279	1/2:32:0,17,15:0:0:17,15:612,540:-93.818,-44.3926,-39.2751,-49.7836,0,-45.2681	1/2:3:0,1,2:0:0:1,2:36,72:-9.12481,-6.23382,-5.93279,-3.24749,0,-2.64543	1/1:59:0,59,0:0:0:59,0:2087,0:-185.849,-17.7608,0,-185.849,-17.7608,-185.849	1/1:46:0,46,0:0:0:46,0:1598,0:-142.872,-13.8474,0,-142.872,-13.8474,-142.872	1/2:6:0,2,4:0:0:2,4:72,144:-17.9116,-12.1095,-11.5074,-6.15931,0,-4.95519	1/2:32:0,15,17:0:0:15,17:522,608:-91.8158,-49.9345,-45.4191,-42.2315,0,-37.1139	1/1:22:0,22,0:0:0:22,0:782,0:-69.7983,-6.62266,0,-69.7983,-6.62266,-69.7983	1/2:4:0,1,3:0:0:1,3:36,108:-12.0804,-9.17208,-8.87105,-3.26578,0,-2.36269	1/2:23:0,8,15:0:0:8,15:283,540:-67.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chr06	2276454	.	T	C	158996	PASS	AB=0.472923;ABP=23.7068;AC=141;AF=0.758065;AN=186;AO=5903;CIGAR=1X;DP=7629;DPB=7629;DPRA=55.8681;EPP=21.6332;EPPR=6.41219;GTI=2;LEN=1;MEANALT=1;MQM=59.8101;MQMR=59.9525;NS=93;NUMALT=1;ODDS=0.463783;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208276;QR=61514;RO=1726;RPL=2;RPP=12803.8;RPPR=3699.04;RPR=5901;RUN=1;SAF=3066;SAP=22.3012;SAR=2837;SRF=895;SRP=8.16346;SRR=831;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:25,18:25:896:18:644:-45.3463,0,-68.0161	1/1:72:0,72:0:0:72:2541:-228.941,-21.6742,0	0/1:98:57,41:57:2035:41:1459:-102.1,0,-153.921	1/1:105:0,105:0:0:105:3726:-335.54,-31.6082,0	0/1:48:34,14:34:1212:14:491:-30.0669,0,-94.9369	0/1:42:22,20:22:784:20:714:-51.9353,0,-58.2407	1/1:81:0,81:0:0:81:2807:-252.863,-24.3834,0	0/1:118:54,64:54:1924:64:2229:-165.331,0,-137.886	0/1:97:61,36:61:2176:36:1275:-85.8524,0,-166.906	0/1:46:26,20:26:932:20:708:-50.1982,0,-70.3515	0/1:89:36,53:36:1279:53:1885:-143.13,0,-88.6198	1/1:186:0,186:0:0:186:6553:-589.834,-55.9916,0	0/1:163:81,82:81:2881:82:2889:-211.163,0,-210.458	0/1:133:69,64:69:2471:64:2245:-162.257,0,-182.603	1/1:119:0,119:0:0:119:4189:-377.179,-35.8226,0	0/1:117:61,56:61:2163:56:1964:-141.461,0,-159.716	1/1:119:0,119:0:0:119:4197:-377.712,-35.8226,0	1/1:87:0,87:0:0:87:3067:-276.237,-26.1896,0	1/1:76:0,76:0:0:76:2652:-238.85,-22.8783,0	1/1:93:0,93:0:0:93:3239:-291.726,-27.9958,0	0/1:152:82,70:82:2919:70:2503:-179.756,0,-217.189	1/1:28:1,27:1:36:27:960:-83.118,-4.83057,0	0/1:58:23,35:23:828:35:1256:-95.8406,0,-57.3844	0/1:69:41,28:41:1472:28:971:-65.6513,0,-112.005	0/1:59:31,28:31:1108:28:1000:-72.5546,0,-82.2699	1/1:136:0,136:0:0:136:4828:-434.674,-40.9401,0	1/1:149:0,149:0:0:149:5255:-473.077,-44.8535,0	1/1:81:0,81:0:0:81:2869:-258.447,-24.3834,0	0/1:88:38,50:38:1360:50:1735:-129.869,0,-96.21	0/1:58:31,27:31:1101:27:960:-69.2547,0,-81.9386	1/1:78:0,78:0:0:78:2709:-244.039,-23.4803,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:295:145,150:145:5199:150:5328:-390.844,0,-379.241	1/1:36:0,36:0:0:36:1253:-113.06,-10.8371,0	1/1:79:0,79:0:0:79:2777:-250.145,-23.7814,0	.:.:.:.:.:.:.:.	1/1:80:0,80:0:0:80:2842:-255.796,-24.0824,0	1/1:52:0,52:0:0:52:1827:-164.681,-15.6536,0	0/1:109:52,57:52:1856:57:2016:-148.895,0,-134.507	0/1:146:70,76:70:2478:76:2699:-199.203,0,-179.323	0/1:115:66,49:66:2355:49:1748:-122.983,0,-177.363	0/1:50:30,20:30:1068:20:720:-50.0755,0,-81.3806	0/1:76:41,35:41:1464:35:1230:-88.1242,0,-109.178	1/1:80:0,80:0:0:80:2802:-252.414,-24.0824,0	1/1:57:0,57:0:0:57:2030:-182.971,-17.1587,0	0/1:80:35,45:35:1252:45:1595:-119.755,0,-88.9027	0/1:71:46,25:46:1628:25:870:-57.2414,0,-125.428	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:71:0,71:0:0:71:2548:-229.567,-21.3731,0	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:65:32,33:32:1148:33:1167:-85.7648,0,-84.0629	1/1:27:1,26:1:36:26:924:-79.8794,-4.52954,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:49:25,24:25:888:24:856:-62.6088,0,-65.4886	1/1:159:1,158:1:36:158:5554:-496.372,-44.2655,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:66:0,66:0:0:66:2360:-212.656,-19.868,0	1/1:96:0,96:0:0:96:3408:-306.927,-28.8989,0	1/1:68:0,68:0:0:68:2407:-216.878,-20.47,0	1/1:38:0,38:0:0:38:1343:-121.169,-11.4391,0	1/1:102:2,100:2:68:100:3488:-307.661,-24.2474,0	1/1:75:0,75:0:0:75:2688:-242.154,-22.5773,0	1/1:76:0,76:0:0:76:2720:-245.038,-22.8783,0	1/1:51:0,51:0:0:51:1779:-160.381,-15.3525,0	1/1:126:0,126:0:0:126:4423:-398.245,-37.9298,0	0/1:10:2,8:2:72:8:275:-22.0725,0,-3.82642	1/1:46:0,46:0:0:46:1626:-146.627,-13.8474,0	0/1:54:33,21:33:1180:21:752:-51.5104,0,-90.2509	0/1:96:60,36:60:2131:36:1296:-88.0451,0,-163.159	1/1:70:1,69:1:36:69:2446:-216.774,-17.4738,0	1/1:56:0,56:0:0:56:1954:-176.122,-16.8577,0	1/1:81:0,81:0:0:81:2852:-256.873,-24.3834,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	1/1:52:0,52:0:0:52:1844:-166.24,-15.6536,0	1/1:55:0,55:0:0:55:1924:-173.424,-16.5567,0	1/1:129:1,128:1:32:128:4522:-403.758,-35.6336,0	1/1:112:0,112:0:0:112:3930:-353.863,-33.7154,0	1/1:123:0,123:0:0:123:4367:-393.142,-37.0267,0	0/1:161:81,80:81:2873:80:2794:-203.23,0,-210.341	1/1:286:3,283:3:108:283:9890:-879.845,-76.0194,0	0/1:61:25,36:25:888:36:1260:-95.3368,0,-61.8762	1/1:117:0,117:0:0:117:4097:-368.73,-35.2205,0	1/1:121:0,121:0:0:121:4288:-386.099,-36.4246,0	1/1:71:0,71:0:0:71:2531:-228.037,-21.3731,0	0/1:142:63,79:63:2256:79:2803:-209.759,0,-160.557	0/1:158:118,40:118:4165:40:1419:-80.4406,0,-327.468	1/1:60:0,60:0:0:60:2100:-189.268,-18.0618,0	1/1:205:0,205:0:0:205:7241:-651.743,-61.7112,0
chr06	2278227	.	TCT	ACG,ACT	230088	PASS	AB=0.495016,0.502553;ABP=3.89779,3.24313;AC=147,41;AF=0.781915,0.218085;AN=188;AO=8583,2085;CIGAR=1X1M1X,1X2M;DP=10688;DPB=10689.3;DPRA=0,0.99431;EPP=18640.8,4530.53;EPPR=16.0391;GTI=1;LEN=3,1;MEANALT=1.7234,2.12963;MQM=59.9844,59.9741;MQMR=59.8333;NS=94;NUMALT=2;ODDS=3.39251;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=70,70;PQR=0;PRO=0;QA=302995,74695;QR=174;RO=6;RPL=8583,2085;RPP=18640.8,4530.53;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=0,0;SAP=18640.8,4530.53;SAR=8583,2085;SRF=0;SRP=16.0391;SRR=6;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:48:0,28,20:0:0:28,20:958,720:-136.855,-59.1082,-50.6793,-78.0988,0,-72.0782	1/1:238:0,235,3:0:0:235,3:8314,108:-747.916,-70.7421,0,-739.104,-61.57,-738.201	1/2:222:1,124,96:1:36:124,96:4385,3448:-635.212,-278.375,-243.985,-354.237,0,-328.275	1/1:219:0,218,0:0:0:218,0:7764,0:-698.432,-65.6245,0,-698.432,-65.6245,-698.432	1/2:104:0,45,59:0:0:45,59:1597,2112:-302.704,-172.588,-159.042,-130.472,0,-112.712	1/2:103:0,54,49:0:0:54,49:1927,1752:-300.308,-143.214,-126.958,-157.451,0,-142.701	1/1:147:0,147,0:0:0:147,0:5141,0:-462.838,-44.2514,0,-462.838,-44.2514,-462.838	1/2:210:0,100,110:0:0:100,110:3484,3932:-604.279,-320.96,-290.857,-283.672,0,-250.559	1/2:78:1,45,32:1:23:45,32:1576,1148:-219.923,-91.998,-80.2166,-126.582,0,-118.716	1/2:112:0,66,46:0:0:66,46:2343,1648:-325.664,-134.761,-114.893,-191.26,0,-177.413	1/2:55:0,22,32:0:0:22,32:790,1148:-158.081,-93.6371,-87.0144,-64.4429,0,-54.8099	1/1:109:0,109,0:0:0:109,0:3810,0:-343.097,-32.8123,0,-343.097,-32.8123,-343.097	1/2:95:0,48,47:0:0:48,47:1707,1676:-276.089,-136.979,-122.529,-139.466,0,-125.318	1/2:80:0,25,54:0:0:25,54:861,1940:-228.187,-158.261,-150.735,-69.9159,0,-53.6603	1/1:99:0,99,0:0:0:99,0:3502,0:-315.392,-29.802,0,-315.392,-29.802,-315.392	1/2:63:0,24,39:0:0:24,39:839,1400:-182.807,-114.559,-107.334,-68.6008,0,-56.8607	1/1:85:0,85,0:0:0:85,0:2996,0:-269.872,-25.5876,0,-269.872,-25.5876,-269.872	1/1:83:0,83,0:0:0:83,0:2959,0:-266.543,-24.9855,0,-266.543,-24.9855,-266.543	1/1:43:0,43,0:0:0:43,0:1514,0:-136.528,-12.9443,0,-136.528,-12.9443,-136.528	1/1:215:0,214,1:0:0:214,1:7610,36:-684.522,-64.4204,0,-681.585,-61.1232,-681.284	1/2:140:0,70,70:0:0:70,70:2471,2508:-406.111,-204.9,-183.828,-201.566,0,-180.494	1/1:83:0,82,0:0:0:82,0:2896,0:-260.457,-24.6845,0,-260.457,-24.6845,-260.457	1/2:127:0,68,59:0:0:68,59:2415,2097:-368.017,-171.237,-150.767,-197.135,0,-179.375	1/2:137:1,71,65:1:23:71,65:2483,2328:-389.839,-188.144,-168.538,-200.35,0,-182.551	1/2:70:0,38,32:0:0:38,32:1359,1139:-203.73,-92.9138,-81.4747,-111.172,0,-101.539	1/1:388:0,388,0:0:0:388,0:13668,0:-1229.92,-116.8,0,-1229.92,-116.8,-1229.92	1/1:261:0,260,0:0:0:260,0:9227,0:-829.904,-78.2678,0,-829.904,-78.2678,-829.904	1/1:53:0,53,0:0:0:53,0:1880,0:-169.478,-15.9546,0,-169.478,-15.9546,-169.478	1/2:259:0,123,136:0:0:123,136:4284,4864:-745.338,-396.974,-359.947,-348.716,0,-307.776	1/2:140:0,59,81:0:0:59,81:2056,2916:-405.486,-238.291,-220.53,-167.548,0,-143.165	1/1:101:0,99,2:0:0:99,2:3495,72:-314.403,-29.802,0,-308.528,-23.5673,-307.926	1/2:9:0,3,6:0:0:3,6:100,216:-26.069,-17.9843,-17.0812,-8.42677,0,-6.62059	1/1:21:0,20,0:0:0:20,0:712,0:-64.094,-6.0206,0,-64.094,-6.0206,-64.094	1/2:8:0,5,3:0:0:5,3:178,108:-23.6772,-9.17208,-7.66693,-14.8635,0,-13.9604	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:280:0,143,137:0:0:143,137:5026,4924:-811.154,-402.067,-359.02,-409.442,0,-368.201	1/1:108:0,108,0:0:0:108,0:3841,0:-345.888,-32.5112,0,-345.888,-32.5112,-345.888	1/1:78:0,77,1:0:0:77,1:2714,36:-244.144,-23.1793,0,-241.207,-19.8821,-240.906	1/2:4:0,3,1:0:0:3,1:106,36:-11.9251,-3.29724,-2.39415,-8.98601,0,-8.68498	1/1:194:0,194,0:0:0:194,0:6815,0:-613.429,-58.3998,0,-613.429,-58.3998,-613.429	1/1:39:0,39,0:0:0:39,0:1393,0:-125.669,-11.7402,0,-125.669,-11.7402,-125.669	1/2:216:0,100,116:0:0:100,116:3532,4141:-625.589,-337.954,-307.851,-287.99,0,-253.07	1/2:124:0,63,61:0:0:63,61:2243,2192:-361.993,-179.183,-160.218,-183.168,0,-164.805	1/2:84:0,41,43:0:0:41,43:1454,1540:-244.406,-125.949,-113.607,-118.814,0,-105.869	1/2:102:0,58,44:0:0:58,44:2075,1580:-298.449,-129.246,-111.786,-169.561,0,-156.316	1/2:145:0,96,49:0:0:96,49:3385,1760:-419.546,-143.933,-115.035,-275.969,0,-261.219	1/1:191:0,190,1:0:0:190,1:6674,36:-600.385,-57.1957,0,-597.448,-53.8985,-597.146	1/1:107:1,105,1:1:36:105,1:3701,36:-329.685,-28.6707,0,-327.049,-28.6707,-329.685	1/2:140:0,61,79:0:0:61,79:2132,2825:-404.134,-230.706,-212.343,-173.781,0,-150	1/2:110:0,59,51:0:0:59,51:2087,1820:-318.711,-148.729,-130.968,-170.337,0,-154.984	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:156:0,156,0:0:0:156,0:5536,0:-498.367,-46.9607,0,-498.367,-46.9607,-498.367	1/1:43:0,43,0:0:0:43,0:1526,0:-137.633,-12.9443,0,-137.633,-12.9443,-137.633	1/2:20:0,5,15:0:0:5,15:180,540:-59.1082,-44.4211,-42.9159,-15.0469,0,-10.5315	1/2:161:0,86,75:0:0:86,75:3047,2700:-468.881,-220.666,-194.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chr06	2293561	.	C	A	35242.5	PASS	AB=0.671224;ABP=748.112;AC=45;AF=0.239362;AN=188;AO=1988;CIGAR=1X;DP=6026;DPB=6026;DPRA=1.38958;EPP=4319.9;EPPR=8769.24;GTI=7;LEN=1;MEANALT=1.01887;MQM=54.3114;MQMR=59.5915;NS=94;NUMALT=1;ODDS=0.4006;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70640;QR=144588;RO=4037;RPL=0;RPP=4319.9;RPPR=8769.24;RPR=1988;RUN=1;SAF=1988;SAP=4319.9;SAR=0;SRF=4037;SRP=8769.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:11,23:11:392:23:809:-62.7157,0,-25.385	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.471	0/1:108:23,85:23:828:85:3040:-238.619,0,-42.3247	0/0:121:121,0:121:4337:0:0:0,-36.4246,-389.866	0/1:17:6,11:6:216:11:396:-30.6846,0,-14.673	0/1:19:12,7:12:432:7:252:-17.2515,0,-33.4934	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.698	0/1:112:30,82:30:1076:82:2926:-226.545,0,-63.4375	0/1:98:37,61:37:1315:61:2192:-167.541,0,-89.1272	0/1:110:30,80:30:1076:80:2872:-225.249,0,-64.0177	0/1:29:9,20:9:324:20:699:-54.3416,0,-20.776	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.538	0/1:61:24,37:24:856:37:1328:-100.605,0,-58.995	0/1:53:17,36:17:608:36:1296:-100.131,0,-39.091	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.172	0/1:44:13,31:13:468:31:1086:-84.3455,0,-29.2097	0/0:22:21,1:21:756:1:36:0,-3.03343,-64.584	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.1676	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.328	0/0:86:85,1:85:3044:1:36:0,-22.2929,-270.586	0/1:186:49,136:49:1756:136:4862:-380.334,0,-102.116	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.7	0/1:109:46,63:46:1648:63:2253:-169.638,0,-115.787	0/1:95:43,52:43:1540:52:1842:-137.096,0,-110.282	0/1:62:21,41:21:756:41:1461:-112.489,0,-49.5687	0/0:212:211,1:211:7571:1:36:0,-60.2227,-677.828	0/0:123:122,1:122:4384:1:36:0,-33.4335,-390.995	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:251:49,202:49:1764:202:7195:-571.616,0,-83.4811	0/1:118:53,65:53:1900:65:2306:-171.748,0,-135.679	0/0:67:64,3:64:2296:3:108:0,-10.1011,-196.825	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.6326	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:4,5:4:144:5:180:-13.7955,0,-10.6043	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:147:70,77:70:2516:77:2742:-202.522,0,-180.988	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.537	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	1/1:2:0,2:0:0:2:68:-6.45092,-0.60206,0	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.464	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6473	0/1:87:29,58:29:1036:58:2069:-160.003,0,-67.3643	0/1:31:7,24:7:252:24:864:-68.4124,0,-13.697	0/1:42:18,24:18:639:24:849:-64.0305,0,-45.0219	0/1:133:38,95:38:1368:95:3367:-263.062,0,-83.3829	0/1:38:11,27:11:396:27:927:-72.0867,0,-24.5436	0/0:87:87,0:87:3105:0:0:0,-26.1896,-279.66	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.574	0/1:108:34,74:34:1220:74:2600:-201.402,0,-77.5885	0/1:139:48,91:48:1728:91:3182:-244.431,0,-113.959	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.589	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.017	0/1:7:3,4:3:104:4:136:-10.4449,0,-7.5956	0/1:122:31,91:31:1100:91:3211:-249.819,0,-62.5672	0/0:23:23,0:23:820:0:0:0,-6.92369,-73.6284	0/1:6:1,5:1:36:5:180:-14.7413,0,-1.79209	0/1:24:8,16:8:288:16:576:-44.8871,0,-19.0427	0/1:77:31,46:31:1112:46:1641:-124.585,0,-77.2074	0/0:71:70,1:70:2489:1:36:0,-17.7774,-220.637	0/1:9:6,3:6:208:3:108:-7.35863,0,-16.3498	0/0:178:178,0:178:6365:0:0:0,-53.5833,-572.927	0/0:109:104,5:104:3723:5:180:0,-16.2721,-318.584	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.356	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2801	0/0:76:73,3:73:2597:3:93:0,-14.2066,-224.806	0/0:50:50,0:50:1792:0:0:0,-15.0515,-160.203	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.886	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4715	0/1:29:9,20:9:324:20:712:-55.5899,0,-20.776	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.586	0/1:61:9,52:9:324:52:1819:-145.221,0,-11.143	0/1:136:59,77:59:2112:77:2742:-205.464,0,-149.289	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.87	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.375	0/0:78:77,1:77:2764:1:36:0,-19.8911,-245.361	0/1:22:4,18:4:144:18:633:-50.5329,0,-6.64781	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.958	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.974	0/0:178:178,0:178:6383:0:0:0,-53.5833,-574.537	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.46	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/1:30:14,16:14:500:16:561:-41.6643,0,-36.3053	0/0:95:94,1:94:3355:1:36:0,-25.0022,-298.558	0/1:23:8,15:8:288:15:525:-40.3509,0,-19.3437	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.218	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.521	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4787	0/1:65:27,38:27:963:38:1349:-101.598,0,-67.4092	0/1:71:17,54:17:594:54:1935:-152.8,0,-32.4101	0/0:126:126,0:126:4513:0:0:0,-37.9298,-406.3	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.523
chr06	2383167	.	A	G	266024	PASS	AB=0.531339;ABP=38.9417;AC=146;AF=0.776596;AN=188;AO=9848;CIGAR=1X;DP=11859;DPB=11859;DPRA=42.4946;EPP=3103.77;EPPR=684.752;GTI=3;LEN=1;MEANALT=1.07527;MQM=59.978;MQMR=59.975;NS=94;NUMALT=1;ODDS=5.35382;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=351562;QR=71822;RO=2003;RPL=6799;RPP=3103.77;RPPR=684.752;RPR=3049;RUN=1;SAF=9848;SAP=21387.7;SAR=0;SRF=2003;SRP=4352.47;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:84:39,45:39:1404:45:1603:-119.267,0,-101.373	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	0/1:279:126,153:126:4516:153:5401:-402.233,0,-322.62	1/1:335:1,334:1:36:334:11909:-1068.07,-97.2468,0	0/1:93:42,51:42:1500:51:1824:-136.445,0,-107.299	0/1:75:42,33:42:1508:33:1188:-84.6513,0,-113.437	1/1:105:0,105:0:0:105:3747:-337.429,-31.6082,0	0/1:173:85,88:85:3029:88:3131:-229.939,0,-220.753	0/1:107:55,52:55:1980:52:1853:-134.824,0,-146.264	0/1:59:22,37:22:792:37:1324:-101.701,0,-53.8449	0/1:54:30,24:30:1076:24:855:-61.0146,0,-80.1185	1/1:115:0,115:0:0:115:4112:-370.265,-34.6185,0	0/1:86:47,39:47:1692:39:1382:-98.7887,0,-126.678	0/1:68:28,40:28:1008:40:1432:-108.708,0,-70.5663	1/1:100:0,100:0:0:100:3580:-322.407,-30.103,0	0/1:67:24,42:24:864:42:1485:-113.852,0,-57.9893	1/1:46:0,46:0:0:46:1643:-148.158,-13.8474,0	1/1:36:0,36:0:0:36:1273:-114.871,-10.8371,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:334:0,334:0:0:334:11915:-1072.21,-100.544,0	0/1:128:55,73:55:1976:73:2612:-196.796,0,-139.583	1/1:210:0,209:0:0:209:7436:-668.927,-62.9153,0	0/1:170:74,96:74:2656:96:3425:-257.288,0,-188.111	0/1:90:42,48:42:1497:48:1720:-127.993,0,-107.93	0/1:99:49,50:49:1756:50:1792:-131.761,0,-128.522	1/1:362:1,359:1:36:359:12780:-1146.41,-105.132,0	1/1:335:2,333:2:72:333:11882:-1062.34,-94.0083,0	1/1:44:0,44:0:0:44:1576:-142.124,-13.2453,0	0/1:333:169,164:169:6049:164:5856:-426.902,0,-444.269	0/1:171:80,91:80:2880:91:3243:-240.613,0,-207.959	1/1:157:1,156:1:36:156:5588:-499.444,-43.6634,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:23:1,22:1:36:22:788:-67.6465,-3.32542,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:17:11,6:11:396:6:212:-14.3073,0,-30.8652	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:233:133,100:133:4769:100:3555:-250.017,0,-359.224	1/1:170:0,170:0:0:170:6077:-547.031,-51.1751,0	1/1:64:0,64:0:0:64:2275:-205.012,-19.2659,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:199:1,198:1:36:198:7079:-633.568,-56.3067,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:171:48,123:48:1709:123:4385:-343.347,0,-102.618	0/1:69:25,44:25:900:44:1572:-120.985,0,-60.5499	0/1:61:38,23:38:1368:23:812:-55.0381,0,-105.058	0/1:160:56,104:56:1993:104:3704:-285.396,0,-131.476	0/1:157:67,90:67:2400:90:3224:-243.12,0,-168.995	1/1:288:0,287:0:0:287:10270:-923.866,-86.3956,0	1/1:122:0,122:0:0:122:4361:-392.663,-36.7257,0	0/1:178:89,89:89:3192:89:3180:-232.841,0,-233.92	0/1:124:47,77:47:1676:77:2772:-212.393,0,-113.799	0/1:18:9,9:9:320:9:309:-22.7222,0,-23.7238	1/1:357:0,357:0:0:357:12757:-1147.95,-107.468,0	1/1:123:0,123:0:0:123:4389:-395.183,-37.0267,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:213:77,136:77:2760:136:4849:-372.445,0,-184.518	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:114:48,65:48:1724:65:2304:-173.389,0,-121.216	1/1:97:0,97:0:0:97:3476:-313.049,-29.1999,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:256:0,256:0:0:256:9143:-822.843,-77.0637,0	1/1:232:5,227:5:180:227:8109:-713.274,-53.2869,0	1/1:83:1,82:1:32:82:2898:-257.855,-21.7862,0	1/1:167:0,167:0:0:167:5943:-534.975,-50.272,0	1/1:209:3,206:3:108:206:7380:-654.171,-52.8401,0	1/1:242:4,238:4:144:238:8503:-751.951,-59.5356,0	1/1:46:0,46:0:0:46:1647:-148.518,-13.8474,0	1/1:78:0,78:0:0:78:2796:-251.872,-23.4803,0	1/1:44:0,44:0:0:44:1557:-140.42,-13.2453,0	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	1/1:195:0,195:0:0:195:6956:-626.105,-58.7009,0	0/1:93:40,53:40:1436:53:1900:-143.282,0,-101.542	0/1:155:83,72:83:2988:72:2584:-186.149,0,-222.491	1/1:289:0,289:0:0:289:10325:-929.174,-86.9977,0	1/1:184:1,182:1:36:182:6498:-581.378,-51.7751,0	1/1:163:1,162:1:36:162:5797:-518.241,-45.4696,0	0/1:10:2,8:2:72:8:279:-22.4372,0,-3.82642	1/1:281:2,279:2:72:279:9930:-886.808,-77.7527,0	1/1:179:0,179:0:0:179:6390:-575.188,-53.8844,0	1/1:262:1,261:1:36:261:9288:-832.291,-75.2716,0	1/1:55:0,55:0:0:55:1974:-177.934,-16.5567,0	1/1:75:0,75:0:0:75:2675:-240.995,-22.5773,0	0/1:62:37,25:37:1332:25:900:-62.6572,0,-101.519	1/1:158:3,155:3:108:155:5545:-489.041,-37.4876,0	0/1:35:21,14:21:748:14:500:-34.8001,0,-57.1092	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0	1/1:44:0,44:0:0:44:1566:-141.231,-13.2453,0	0/1:91:57,33:57:2048:33:1173:-78.405,0,-157.139	0/1:75:55,20:55:1976:20:720:-42.5515,0,-155.537	1/1:195:0,195:0:0:195:6961:-626.556,-58.7009,0	1/1:115:0,115:0:0:115:4124:-371.344,-34.6185,0
chr06	2390715	.	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chr06	2421670	.	G	A	24755.9	PASS	AB=0.622007;ABP=283.842;AC=47;AF=0.252688;AN=186;AO=1386;CIGAR=1X;DP=4379;DPB=4379;DPRA=1.22863;EPP=3012.67;EPPR=6500.06;GTI=5;LEN=1;MEANALT=1.02222;MQM=59.8687;MQMR=59.0555;NS=93;NUMALT=1;ODDS=0.372038;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49546;QR=106321;RO=2992;RPL=0;RPP=3012.67;RPPR=6491.37;RPR=1386;RUN=1;SAF=0;SAP=3012.67;SAR=1386;SRF=1;SRP=6491.37;SRR=2991;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:8,41:8:275:41:1453:-116.313,0,-10.2447	0/0:34:34,0:34:1202:0:0:0,-10.235,-108.475	0/1:94:53,41:53:1896:41:1457:-103.126,0,-142.485	0/0:96:95,1:95:3391:1:36:0,-25.3006,-301.721	0/1:27:3,24:3:108:24:860:-69.5656,0,-1.94736	0/1:15:5,10:5:176:10:356:-27.8658,0,-11.6696	0/0:41:41,0:41:1454:0:0:0,-12.3422,-130.472	0/1:62:17,45:17:612:45:1603:-125.891,0,-36.7136	0/1:78:28,50:28:1004:50:1783:-136.481,0,-67.1083	0/1:34:6,28:6:203:28:989:-79.0869,0,-8.36575	0/1:44:8,36:8:284:36:1284:-102.617,0,-12.658	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.142	0/1:77:22,55:22:780:55:1967:-154.123,0,-46.8781	0/1:63:21,42:21:744:42:1500:-116.329,0,-48.3194	0/0:45:45,0:45:1596:0:0:0,-13.5463,-143.91	0/1:58:24,34:24:843:34:1215:-92.1951,0,-58.7283	0/0:33:33,0:33:1164:0:0:0,-9.93399,-104.635	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.6192	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:93:93,0:93:3292:0:0:0,-27.9958,-296.352	0/1:82:20,62:20:716:62:2220:-175.38,0,-40.0726	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.731	0/1:54:12,42:12:428:42:1504:-119.353,0,-22.6032	0/1:50:16,34:16:544:34:1224:-95.4155,0,-34.1914	0/1:63:14,49:14:500:49:1760:-139.719,0,-26.3488	0/0:71:71,0:71:2496:0:0:0,-21.3731,-224.871	0/0:111:111,0:111:3939:0:0:0,-33.4143,-354.535	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:112:52,60:52:1864:60:2148:-159.87,0,-134.147	0/1:53:22,31:22:783:31:1098:-83.174,0,-54.7934	0/1:28:25,3:25:891:3:104:-1.27397,0,-72.0662	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.9389	0/1:5:1,4:1:32:4:144:-11.8085,0,-1.69416	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.82374	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:154:71,83:71:2544:83:2968:-220.992,0,-182.806	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8453	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.725	.:.:.:.:.:.:.:.	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6294	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.411	0/1:97:49,48:49:1756:48:1716:-125.526,0,-129.123	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/1:27:14,13:14:500:13:468:-34.3314,0,-37.1946	0/1:54:22,31:22:784:31:1112:-84.0778,0,-54.5672	0/1:28:10,18:10:360:18:648:-50.223,0,-24.2794	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.614	0/0:67:67,0:67:2381:0:0:0,-20.169,-214.499	0/1:74:29,45:29:1028:45:1608:-122.733,0,-70.5013	0/1:87:42,45:42:1499:45:1616:-119.539,0,-108.831	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2049	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:83:37,46:37:1306:46:1647:-123.532,0,-92.8239	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.849	1/1:14:1,13:1:36:13:468:-38.8695,-0.625192,0	0/1:17:2,15:2:72:15:536:-43.4555,0,-1.71921	0/1:49:14,35:14:496:35:1252:-98.2346,0,-30.0635	0/0:84:84,0:84:2995:0:0:0,-25.2865,-269.732	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.252	0/0:64:64,0:64:2253:0:0:0,-19.2659,-202.738	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.5698	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.426	0/0:42:41,1:41:1472:1:36:0,-9.04498,-128.748	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.97	0/0:38:38,0:38:1339:0:0:0,-11.4391,-120.62	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8627	0/0:39:39,0:39:1386:0:0:0,-11.7402,-124.992	1/1:5:0,5:0:0:5:180:-16.5517,-1.50515,0	0/0:59:59,0:59:2099:0:0:0,-17.7608,-188.837	0/1:65:28,37:28:996:37:1320:-99.5341,0,-70.2813	0/1:100:50,50:50:1739:50:1800:-132.11,0,-126.515	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.562	0/0:30:30,0:30:1062:0:0:0,-9.0309,-95.7802	0/0:33:33,0:33:1151:0:0:0,-9.93399,-103.856	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:38:38,0:38:1332:0:0:0,-11.4391,-119.867	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.414	0/0:74:74,0:74:2638:0:0:0,-22.2762,-237.586	0/0:39:39,0:39:1375:0:0:0,-11.7402,-123.993	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.881	0/1:35:12,23:12:413:23:809:-62.5923,0,-26.9456	0/0:69:69,0:69:2453:0:0:0,-20.7711,-220.983	0/1:26:9,17:9:320:17:609:-47.3143,0,-21.3156	0/0:56:56,0:56:1969:0:0:0,-16.8577,-177.349	0/0:45:45,0:45:1588:0:0:0,-13.5463,-142.291	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.454	0/1:105:32,73:32:1148:73:2609:-203.442,0,-71.6488	0/1:59:16,43:16:572:43:1535:-120.681,0,-34.0389	0/0:59:59,0:59:2088:0:0:0,-17.7608,-187.935	0/0:50:50,0:50:1765:0:0:0,-15.0515,-159.118
chr06	2421681	.	CTGC	TGGA,CTGG	92370	PASS	AB=0.378354,0.618008;ABP=285.652,268.999;AC=139,47;AF=0.747312,0.252688;AN=186;AO=3018,1394;CIGAR=2X1M1X,3M1X;DP=4433;DPB=4433;DPRA=7.355,1.22985;EPP=6556.51,3030.04;EPPR=0;GTI=4;LEN=4,1;MEANALT=1.67778,2.13333;MQM=58.9904,59.873;MQMR=0;NS=93;NUMALT=2;ODDS=0.0719044;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=105468,49607;QR=0;RO=0;RPL=0,0;RPP=6556.51,3030.04;RPPR=0;RPR=3018,1394;RUN=1,1;SAF=0,0;SAP=6556.51,3030.04;SAR=3018,1394;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:50:0,8,42:0:0:8,42:271,1466:-141.468,-119.588,-117.18,-22.2189,0,-9.57562	1/1:33:0,33,0:0:0:33,0:1166,0:-105.231,-9.93399,0,-105.231,-9.93399,-105.231	1/2:95:0,54,41:0:0:54,41:1875,1460:-271.646,-119.352,-103.097,-152.646,0,-140.304	1/1:97:0,95,1:0:0:95,1:3324,36:-298.913,-28.5979,0,-295.976,-25.6604,-295.675	1/2:27:0,3,24:0:0:3,24:103,864:-79.1911,-70.8294,-69.9263,-8.70671,0,-1.48199	1/2:16:0,5,11:0:0:5,11:178,387:-46.3636,-31.8546,-30.3495,-14.8635,0,-11.5522	1/1:43:0,43,0:0:0:43,0:1503,0:-135.079,-12.9443,0,-135.079,-12.9443,-135.079	1/2:65:0,17,48:0:0:17,48:591,1703:-187.062,-139.032,-133.914,-48.3795,0,-33.9301	1/2:78:0,29,48:0:0:29,48:1004,1709:-221.002,-139.423,-130.693,-81.7055,0,-67.256	1/2:36:0,6,29:0:0:6,29:203,1010:-98.6749,-82.2195,-80.4133,-16.5321,0,-7.80224	1/2:44:0,8,36:0:0:8,36:282,1284:-127.985,-105.026,-102.617,-23.3128,0,-12.4758	1/1:70:0,70,0:0:0:70,0:2450,0:-220.414,-21.0721,0,-220.414,-21.0721,-220.414	1/2:78:0,22,56:0:0:22,56:762,2003:-225.145,-163.683,-157.06,-61.8095,0,-44.9518	1/2:62:0,22,40:0:0:22,40:746,1421:-176.631,-116.143,-109.521,-60.832,0,-48.7908	1/1:45:0,43,0:0:0:43,0:1491,0:-134.112,-12.9443,0,-134.112,-12.9443,-134.112	1/2:58:0,24,34:0:0:24,34:821,1205:-165.151,-98.518,-91.2932,-66.9796,0,-56.7446	1/1:33:0,32,0:0:0:32,0:1128,0:-101.098,-9.63296,0,-101.098,-9.63296,-101.098	1/1:23:0,23,0:0:0:23,0:782,0:-70.6212,-6.92369,0,-70.6212,-6.92369,-70.6212	1/1:12:0,12,0:0:0:12,0:424,0:-38.497,-3.61236,0,-38.497,-3.61236,-38.497	1/1:94:0,94,0:0:0:94,0:3267,0:-294.179,-28.2968,0,-294.179,-28.2968,-294.179	1/2:80:0,20,59:0:0:20,59:704,2099:-228.422,-171.117,-165.097,-57.355,0,-39.5942	1/1:42:0,42,0:0:0:42,0:1471,0:-132.64,-12.6433,0,-132.64,-12.6433,-132.64	1/2:55:0,12,43:0:0:12,43:427,1527:-159.533,-124.732,-121.12,-35.1562,0,-22.2119	1/2:49:0,16,33:0:0:16,33:567,1180:-142.735,-96.5741,-91.7576,-46.5156,0,-36.5816	1/2:62:0,14,47:0:0:14,47:487,1679:-176.461,-136.888,-132.674,-39.564,0,-25.4156	1/1:71:0,70,0:0:0:70,0:2435,0:-218.975,-21.0721,0,-218.975,-21.0721,-218.975	1/1:112:0,108,0:0:0:108,0:3791,0:-340.973,-32.5112,0,-340.973,-32.5112,-340.973	1/1:20:0,20,0:0:0:20,0:696,0:-62.9631,-6.0206,0,-62.9631,-6.0206,-62.9631	1/2:116:0,53,63:0:0:53,63:1852,2252:-334.548,-183.959,-168.004,-150.942,0,-131.977	1/2:55:0,23,32:0:0:23,32:800,1110:-155.588,-90.5694,-83.6457,-65.366,0,-55.7331	1/2:28:0,25,3:0:0:25,3:874,108:-80.2596,-9.17208,-1.64633,-71.4462,0,-70.5432	2/2:7:0,0,7:0:0:0,7:0,252:-23.029,-23.029,-23.029,-2.10721,-2.10721,0	1/1:12:0,12,0:0:0:12,0:426,0:-38.4063,-3.61236,0,-38.4063,-3.61236,-38.4063	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/2:14:0,3,11:0:0:3,11:108,396:-41.4477,-32.6714,-31.7683,-9.13507,0,-5.82374	1/1:8:0,8,0:0:0:8,0:274,0:-24.9928,-2.40824,0,-24.9928,-2.40824,-24.9928	1/2:157:0,71,86:0:0:71,86:2475,3046:-449.735,-248.479,-227.106,-201.607,0,-175.719	1/1:19:0,19,0:0:0:19,0:669,0:-60.5241,-5.71957,0,-60.5241,-5.71957,-60.5241	1/1:32:0,32,0:0:0:32,0:1119,0:-100.917,-9.63296,0,-100.917,-9.63296,-100.917	.:.:.:.:.:.:.:.	1/1:19:0,19,0:0:0:19,0:678,0:-61.3309,-5.71957,0,-61.3309,-5.71957,-61.3309	1/1:38:0,38,0:0:0:38,0:1319,0:-118.919,-11.4391,0,-118.919,-11.4391,-118.919	1/2:99:0,50,49:0:0:50,49:1778,1751:-288.016,-143.123,-128.071,-145.25,0,-130.499	1/2:29:0,15,14:0:0:15,14:525,500:-83.8326,-41.1218,-36.6063,-43.0644,0,-38.85	1/2:28:0,14,14:0:0:14,14:488,504:-81.1617,-41.4833,-37.2688,-40.0326,0,-35.8182	1/2:56:0,25,31:0:0:25,31:865,1112:-161.321,-91.0594,-83.5337,-70.6128,0,-61.2809	1/2:28:0,10,18:0:0:10,18:354,644:-81.6706,-52.8721,-49.8618,-29.1535,0,-23.735	1/1:52:0,51,0:0:0:51,0:1789,0:-160.925,-15.3525,0,-160.925,-15.3525,-160.925	1/1:67:0,67,0:0:0:67,0:2364,0:-212.986,-20.169,0,-212.986,-20.169,-212.986	1/2:74:0,30,44:0:0:30,44:1051,1576:-214.354,-128.885,-119.855,-85.8219,0,-72.5765	1/2:88:0,42,44:0:0:42,44:1466,1564:-246.602,-127.517,-114.873,-119.148,0,-105.902	2/2:8:0,0,8:0:0:0,8:0,288:-26.2674,-26.2674,-26.2674,-2.40824,-2.40824,0	1/1:31:0,31,0:0:0:31,0:1106,0:-99.8509,-9.33193,0,-99.8509,-9.33193,-99.8509	1/1:15:0,15,0:0:0:15,0:529,0:-47.9337,-4.51545,0,-47.9337,-4.51545,-47.9337	1/2:15:0,6,9:0:0:6,9:212,324:-44.0596,-26.7966,-24.9904,-17.6188,0,-14.9096	1/2:83:0,36,46:0:0:36,46:1263,1636:-236.201,-133.425,-122.587,-102.875,0,-89.0278	1/1:19:0,19,0:0:0:19,0:671,0:-60.6874,-5.71957,0,-60.6874,-5.71957,-60.6874	2/2:14:0,1,13:0:0:1,13:33,468:-42.1271,-39.4652,-39.1642,-3.91339,-0.919851,0	1/2:17:0,2,15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chr06	2421721	.	T	C	24996.6	PASS	AB=0.626838;ABP=307.08;AC=47;AF=0.252688;AN=186;AO=1400;CIGAR=1X;DP=4372;DPB=4372;DPRA=1.22301;EPP=3043.07;EPPR=6456.63;GTI=6;LEN=1;MEANALT=1;MQM=59.8286;MQMR=59.0656;NS=93;NUMALT=1;ODDS=0.12967;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49962;QR=104354;RO=2972;RPL=1400;RPP=3043.07;RPPR=6456.63;RPR=0;RUN=1;SAF=0;SAP=3043.07;SAR=1400;SRF=0;SRP=6456.63;SRR=2972;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:8,41:8:284:41:1434:-114.6,0,-11.0574	0/0:31:31,0:31:1074:0:0:0,-9.33193,-96.9594	0/1:93:51,42:51:1786:42:1489:-106.305,0,-132.903	0/0:94:93,1:93:3253:1:36:0,-24.6985,-289.275	0/1:27:3,24:3:104:24:864:-69.9263,0,-1.575	0/1:16:5,11:5:176:11:381:-29.8042,0,-11.3685	0/0:41:41,0:41:1438:0:0:0,-12.3422,-129.665	0/1:59:15,44:15:525:44:1572:-123.937,0,-29.8173	0/1:77:29,48:29:1040:48:1709:-130.422,0,-70.5447	0/1:36:5,31:5:161:31:1112:-89.5089,0,-3.96948	0/1:43:8,35:8:279:35:1260:-100.76,0,-12.5032	0/0:66:66,0:66:2368:0:0:0,-19.868,-212.548	0/1:76:21,55:21:733:55:1968:-154.515,0,-42.9457	0/1:64:22,42:22:792:42:1508:-116.748,0,-52.3398	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.744	0/1:57:24,33:24:852:33:1184:-89.7087,0,-59.8417	0/0:33:33,0:33:1161:0:0:0,-9.93399,-104.771	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.848	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/0:92:92,0:92:3081:0:0:0,-27.6948,-277.242	0/1:81:20,61:20:712:61:2188:-172.802,0,-40.0126	0/0:41:41,0:41:1430:0:0:0,-12.3422,-128.913	0/1:55:12,43:12:423:43:1521:-120.578,0,-21.8484	0/1:48:15,33:15:540:33:1188:-92.7792,0,-34.4862	0/1:64:14,50:14:485:50:1786:-141.757,0,-24.6885	0/0:71:71,0:71:2502:0:0:0,-21.3731,-225.311	0/0:112:112,0:112:3963:0:0:0,-33.7154,-356.693	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:113:52,61:52:1823:61:2177:-162.159,0,-130.312	0/1:55:23,32:23:809:32:1152:-87.4335,0,-56.5267	0/1:28:25,3:25:881:3:108:-1.64633,0,-71.1633	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.3705	0/1:6:1,5:1:21:5:180:-14.745,0,-0.293766	0/1:14:3,11:3:93:11:396:-31.7683,0,-4.4253	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:156:71,85:71:2540:85:3026:-225.603,0,-181.849	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1277	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.739	.:.:.:.:.:.:.:.	0/0:20:20,0:20:697:0:0:0,-6.0206,-63.0415	0/0:35:34,1:34:1201:1:36:0,-6.96262,-104.741	0/1:97:48,49:48:1693:49:1756:-129.124,0,-123.452	0/1:30:16,14:16:557:14:500:-36.3053,0,-41.4247	0/1:28:14,14:14:500:14:504:-37.2688,0,-36.9018	0/1:55:24,31:24:830:31:1112:-83.8347,0,-58.283	0/1:29:9,20:9:320:20:720:-56.3989,0,-20.4125	0/0:52:52,0:52:1834:0:0:0,-15.6536,-165.317	0/0:68:68,0:68:2380:0:0:0,-20.47,-214.384	0/1:75:30,45:30:1065:45:1616:-123.152,0,-73.5188	0/1:87:42,45:42:1478:45:1586:-116.835,0,-106.938	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/0:32:32,0:32:1098:0:0:0,-9.63296,-99.1219	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5699	0/1:15:6,9:6:212:9:320:-24.6269,0,-14.9093	0/1:81:34,47:34:1197:47:1657:-125.026,0,-83.65	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.5267	1/1:14:1,13:1:36:13:464:-38.5074,-0.625192,0	0/1:17:2,15:2:72:15:540:-43.8172,0,-1.71921	0/1:49:14,35:14:480:35:1256:-98.5948,0,-28.6164	0/0:84:84,0:84:2990:0:0:0,-25.2865,-269.201	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:65:65,0:65:2253:0:0:0,-19.5669,-202.979	0/0:63:63,0:63:2174:0:0:0,-18.9649,-195.673	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.4634	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.577	0/0:43:42,1:42:1455:1:36:0,-9.34601,-127.579	0/0:33:33,0:33:1154:0:0:0,-9.93399,-104.086	0/0:35:35,0:35:1134:0:0:0,-10.536,-102.153	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2265	0/0:40:40,0:40:1394:0:0:0,-12.0412,-125.716	1/1:5:0,5:0:0:5:180:-16.5517,-1.50515,0	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.268	0/1:64:27,37:27:960:37:1316:-99.475,0,-67.3795	0/1:96:47,49:47:1643:49:1745:-128.364,0,-119.141	0/0:39:39,0:39:1377:0:0:0,-11.7402,-124.116	0/0:29:29,0:29:1002:0:0:0,-8.72987,-90.4081	0/0:33:33,0:33:1127:0:0:0,-9.93399,-101.689	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.161	0/0:49:49,0:49:1707:0:0:0,-14.7505,-153.858	0/0:74:74,0:74:2609:0:0:0,-22.2762,-234.98	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.006	0/0:53:53,0:53:1848:0:0:0,-15.9546,-166.55	0/1:35:12,23:12:417:23:820:-63.5865,0,-27.308	0/0:70:70,0:70:2470:0:0:0,-21.0721,-222.48	0/1:26:9,17:9:320:17:597:-46.2275,0,-21.3156	0/0:56:56,0:56:2000:0:0:0,-16.8577,-179.837	0/0:44:44,0:44:1564:0:0:0,-13.2453,-140.375	0/0:44:44,0:44:1557:0:0:0,-13.2453,-140.361	0/1:108:32,76:32:1148:76:2709:-211.469,0,-70.7109	0/1:60:16,44:16:534:44:1569:-123.437,0,-30.299	0/0:60:60,0:60:2091:0:0:0,-18.0618,-188.312	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.047
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chr06	2472955	.	A	G	168331	PASS	AB=0.517602;ABP=13.5597;AC=145;AF=0.771277;AN=188;AO=7828;CIGAR=1X;DP=9742;DPB=9742;DPRA=0;EPP=17001.3;EPPR=4139.67;GTI=3;LEN=1;MEANALT=1.04255;MQM=59.8964;MQMR=59.9675;NS=94;NUMALT=1;ODDS=0.10584;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279838;QR=68157;RO=1909;RPL=7828;RPP=17001.3;RPPR=4148.35;RPR=0;RUN=1;SAF=0;SAP=17001.3;SAR=7828;SRF=1;SRP=4139.67;SRR=1908;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:38,36:38:1356:36:1284:-93.5834,0,-100.064	1/1:184:0,184:0:0:184:6541:-588.738,-55.3895,0	0/1:127:62,65:62:2224:65:2320:-170.811,0,-162.193	1/1:179:0,179:0:0:179:6399:-575.786,-53.8844,0	0/1:87:38,49:38:1349:49:1756:-132.134,0,-95.5187	0/1:93:47,46:47:1692:46:1648:-120.601,0,-124.571	1/1:206:1,205:1:36:205:7341:-657.132,-58.4139,0	0/1:164:73,91:73:2616:91:3244:-242.806,0,-186.319	0/1:164:84,80:84:3005:80:2859:-208.173,0,-220.883	0/1:141:82,59:82:2895:59:2124:-148.983,0,-218.338	0/1:66:29,37:29:1040:37:1318:-98.9674,0,-74.0464	1/1:107:0,107:0:0:107:3836:-345.436,-32.2102,0	0/1:112:55,57:55:1967:57:2044:-150.457,0,-143.589	0/1:81:38,43:38:1368:43:1548:-115.23,0,-99.0374	1/1:90:0,90:0:0:90:3220:-290.022,-27.0927,0	0/1:62:27,35:27:953:35:1243:-93.4526,0,-67.4195	1/1:92:0,92:0:0:92:3279:-295.326,-27.6948,0	1/1:79:0,79:0:0:79:2840:-255.836,-23.7814,0	1/1:68:0,68:0:0:68:2418:-217.861,-20.47,0	1/1:187:2,185:2:72:185:6620:-589.025,-49.4559,0	0/1:210:108,102:108:3823:102:3606:-261.501,0,-281.049	1/1:73:0,73:0:0:73:2604:-234.608,-21.9752,0	0/1:85:42,43:42:1474:43:1531:-112.495,0,-107.36	0/1:87:36,51:36:1269:51:1832:-138.971,0,-88.3211	0/1:80:37,43:37:1320:43:1544:-115.171,0,-95.0163	1/1:412:4,408:4:144:408:14616:-1301.77,-110.711,0	1/1:226:0,226:0:0:226:8064:-725.767,-68.0328,0	1/1:69:0,69:0:0:69:2468:-222.357,-20.7711,0	0/1:257:111,146:111:3973:146:5220:-392.468,0,-280.394	0/1:80:32,48:32:1137:48:1720:-130.898,0,-78.5546	1/1:164:5,159:5:180:159:5681:-494.769,-32.8169,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:207:111,96:111:3992:96:3431:-246.69,0,-297.155	1/1:121:0,121:0:0:121:4320:-388.968,-36.4246,0	1/1:81:1,80:1:36:80:2859:-253.912,-20.7852,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:158:0,157:0:0:157:5601:-503.812,-47.2617,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:136:58,78:58:2069:78:2796:-210.938,0,-145.539	0/1:99:37,62:37:1317:62:2232:-171.342,0,-89.0279	0/1:78:36,42:36:1277:42:1482:-110.191,0,-91.7508	0/1:79:36,43:36:1292:43:1531:-114.299,0,-92.8024	0/1:103:55,48:55:1972:48:1720:-124.079,0,-146.749	1/1:145:0,145:0:0:145:5164:-464.899,-43.6494,0	1/1:126:0,126:0:0:126:4508:-405.25,-37.9298,0	0/1:145:82,63:82:2948:63:2245:-158.662,0,-221.904	0/1:175:84,91:84:2997:91:3237:-238.871,0,-217.28	0/1:6:4,2:4:129:2:72:-5.03054,0,-10.1215	1/1:83:0,83:0:0:83:2959:-266.515,-24.9855,0	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	0/1:15:3,12:3:108:12:428:-34.3401,0,-5.55972	0/1:113:56,57:56:1982:57:2032:-149.136,0,-144.634	1/1:25:0,25:0:0:25:896:-80.9599,-7.52575,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/1:68:33,35:33:1184:35:1245:-91.8674,0,-86.3983	1/1:115:0,115:0:0:115:4132:-372.062,-34.6185,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:135:0,135:0:0:135:4811:-433.148,-40.6391,0	1/1:151:0,150:0:0:150:5380:-483.953,-45.1545,0	1/1:62:0,62:0:0:62:2216:-199.701,-18.6639,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	1/1:163:1,162:1:36:162:5766:-515.457,-45.4696,0	1/1:108:1,107:1:36:107:3836:-341.838,-28.913,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:77:0,77:0:0:77:2772:-249.719,-23.1793,0	1/1:90:0,90:0:0:90:3224:-290.381,-27.0927,0	0/1:26:8,18:8:288:18:640:-50.1025,0,-18.4406	1/1:114:0,114:0:0:114:4075:-366.931,-34.3174,0	0/1:50:29,21:29:1040:21:740:-51.8657,0,-78.8629	0/1:251:121,130:121:4335:130:4621:-340.472,0,-314.766	1/1:204:0,204:0:0:204:7244:-651.91,-61.4101,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	1/1:82:0,80:0:0:80:2876:-258.716,-24.0824,0	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	1/1:99:0,99:0:0:99:3519:-316.913,-29.802,0	1/1:89:0,88:0:0:88:3152:-283.545,-26.4906,0	1/1:316:2,314:2:72:314:11225:-1003.24,-88.2888,0	1/1:98:0,98:0:0:98:3520:-317.009,-29.5009,0	1/1:78:0,78:0:0:78:2794:-251.699,-23.4803,0	0/1:137:62,75:62:2213:75:2692:-201.26,0,-158.192	1/1:161:1,160:1:36:160:5739:-513.024,-44.8676,0	0/1:35:13,22:13:453:22:792:-61.0696,0,-30.5636	1/1:86:0,86:0:0:86:3088:-278.145,-25.8886,0	1/1:80:0,80:0:0:80:2857:-257.366,-24.0824,0	1/1:57:0,57:0:0:57:2044:-184.226,-17.1587,0	0/1:92:49,43:49:1756:43:1539:-111.108,0,-130.629	0/1:66:44,22:44:1580:22:792:-51.7377,0,-122.537	1/1:143:0,143:0:0:143:5104:-459.5,-43.0473,0	1/1:138:0,138:0:0:138:4946:-445.286,-41.5421,0
chr06	2473324	.	A	G	28682.9	PASS	AB=0.429057;ABP=157.369;AC=42;AF=0.223404;AN=188;AO=1530;CIGAR=1X;DP=8939;DPB=8939;DPRA=1.15794;EPP=1860.45;EPPR=10765.5;GTI=6;LEN=1;MEANALT=1.03636;MQM=60;MQMR=59.9935;NS=94;NUMALT=1;ODDS=0.666221;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54591;QR=265260;RO=7407;RPL=1528;RPP=3308.01;RPPR=15965.7;RPR=2;RUN=1;SAF=191;SAP=1873.46;SAR=1339;SRF=660;SRP=10865.2;SRR=6747;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5887	0/0:147:147,0:147:5261:0:0:0,-44.2514,-473.625	0/1:70:43,27:43:1525:27:972:-66.7258,0,-116.469	0/0:148:147,1:147:5255:1:36:0,-40.9542,-469.489	0/1:62:32,30:32:1144:30:1072:-78.1286,0,-84.6057	0/1:57:31,26:31:1112:26:922:-66.1369,0,-83.2326	0/0:81:81,0:81:2894:0:0:0,-24.3834,-260.695	0/1:119:62,57:62:2219:57:2023:-146.52,0,-164.151	0/1:98:66,32:66:2359:32:1135:-72.9571,0,-183.067	0/1:108:69,39:69:2468:39:1396:-93.4279,0,-189.863	0/1:78:36,42:36:1292:42:1508:-112.534,0,-93.1034	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:83:41,42:41:1468:42:1503:-110.578,0,-107.431	0/1:96:50,46:50:1772:46:1644:-119.349,0,-130.862	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:56:23,33:23:824:33:1184:-90.0106,0,-57.6256	0/0:81:81,0:81:2887:0:0:0,-24.3834,-260.067	0/0:88:87,1:87:3132:1:36:0,-22.8924,-278.506	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:175:175,0:175:6270:0:0:0,-52.6802,-564.392	0/1:111:62,49:62:2223:49:1743:-123.739,0,-166.919	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:83:65,18:65:2340:18:644:-33.3051,0,-185.873	0/1:73:48,25:48:1724:25:881:-57.6307,0,-133.47	0/1:64:42,22:42:1495:22:779:-51.1661,0,-115.578	0/0:451:450,1:450:16132:1:36:0,-132.166,-1447.96	0/0:181:180,1:180:6442:1:36:0,-50.8882,-576.267	0/0:35:35,0:35:1238:0:0:0,-10.536,-111.723	0/1:330:181,149:181:6487:149:5308:-378.516,0,-484.517	0/1:88:45,43:45:1608:43:1536:-112.042,0,-118.519	0/0:118:117,1:117:4188:1:36:0,-31.9233,-373.503	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:350:196,154:196:7028:154:5492:-389.049,0,-527.22	0/0:154:154,0:154:5527:0:0:0,-46.3586,-497.553	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:139:139,0:139:4966:0:0:0,-41.8432,-447.089	0/0:60:60,0:60:2121:0:0:0,-18.0618,-191.157	0/1:68:39,29:39:1388:29:1040:-73.4443,0,-104.749	0/1:110:61,49:61:2184:49:1745:-124.22,0,-163.713	0/1:75:32,43:32:1148:43:1532:-115.596,0,-81.0526	0/1:112:64,48:64:2292:48:1712:-120.65,0,-172.826	0/1:112:70,42:70:2489:42:1498:-101.399,0,-190.547	0/0:159:159,0:159:5678:0:0:0,-47.8638,-511.137	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:143:81,62:81:2903:62:2218:-156.837,0,-218.457	0/1:112:62,50:62:2204:50:1784:-127.127,0,-164.91	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.242	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:122:86,36:86:3083:36:1275:-78.3251,0,-240.971	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.5925	0/1:83:65,18:65:2332:18:626:-31.6775,0,-185.154	0/0:108:108,0:108:3871:0:0:0,-32.5112,-348.584	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:212:211,1:211:7572:1:36:0,-60.2201,-677.918	0/0:156:156,0:156:5608:0:0:0,-46.9607,-504.839	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:140:139,1:139:4975:1:36:0,-38.5459,-444.3	0/0:98:96,2:96:3452:2:72:0,-22.6642,-304.055	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.472	0/0:52:51,1:51:1828:1:36:0,-12.0553,-161.203	0/0:188:188,0:188:6740:0:0:0,-56.5936,-606.673	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:33:22,11:22:792:11:396:-26.0488,0,-61.6717	0/1:198:96,102:96:3402:102:3660:-269.999,0,-246.79	0/0:112:112,0:112:4019:0:0:0,-33.7154,-361.897	0/0:172:172,0:172:6167:0:0:0,-51.7772,-555.126	0/0:100:98,2:98:3516:2:72:0,-23.2663,-309.813	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:118:116,1:116:4138:1:36:0,-31.9821,-369.006	0/0:129:129,0:129:4618:0:0:0,-38.8329,-415.782	0/0:191:190,1:190:6808:1:36:0,-53.8985,-608.566	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.099	0/1:110:62,48:62:2224:48:1728:-122.692,0,-167.311	0/0:116:114,1:114:4092:1:36:0,-31.38,-364.866	0/1:46:29,17:29:1044:17:604:-40.8432,0,-80.4274	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:99:51,48:51:1823:48:1716:-124.924,0,-134.548	0/1:73:28,45:28:1004:45:1595:-121.864,0,-68.7007	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:119:119,0:119:4259:0:0:0,-35.8226,-383.488
chr06	2580523	.	TATTTATG	TACGTATG,TACTTATG	265741	PASS	AB=0.516674,0.477417;ABP=14.4515,23.9991;AC=144,44;AF=0.765957,0.234043;AN=188;AO=10707,2307;CIGAR=2M2X4M,2M1X5M;DP=13097;DPB=13097;DPRA=35.1962,1.19414;EPP=23253,5012.6;EPPR=5.18177;GTI=7;LEN=2,1;MEANALT=2.35484,2.83333;MQM=39.4657,59.4439;MQMR=60;NS=94;NUMALT=2;ODDS=4.33334;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=377078,82540;QR=35;RO=1;RPL=10707,2307;RPP=23253,5012.6;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=23253,5012.6;SAR=10707,2307;SRF=0;SRP=5.18177;SRR=1;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:0,36,17:0:0:36,17:1235,612:-142.359,-49.9599,-39.1228,-92.4105,0,-87.293	1/1:183:0,182,0:0:0:182,0:6354,0:-532.096,-54.7875,0,-532.096,-54.7875,-532.096	1/2:215:0,121,92:0:0:121,92:4231,3285:-586.019,-267.776,-231.351,-318.334,0,-290.639	1/1:285:0,285,0:0:0:285,0:10084,0:-877.041,-85.7936,0,-877.041,-85.7936,-877.041	1/2:158:0,69,88:0:0:69,88:2464,3121:-443.925,-254.107,-233.336,-189.808,0,-163.317	1/2:117:0,68,48:0:0:68,48:2413,1724:-322.012,-140.591,-120.121,-181.433,0,-166.983	1/1:191:0,188,0:0:0:188,0:6674,0:-580.307,-56.5936,0,-580.307,-56.5936,-580.307	1/2:210:0,108,101:0:0:108,101:3763,3626:-577.864,-295.371,-262.86,-282.613,0,-252.208	1/2:154:0,73,80:0:0:73,80:2572,2868:-427.553,-233.857,-211.881,-193.79,0,-169.708	1/2:151:0,66,83:0:0:66,83:2342,2984:-427.305,-243.442,-223.574,-183.903,0,-158.917	1/2:67:0,31,36:0:0:31,36:1097,1292:-191.388,-105.711,-96.3786,-86.0262,0,-75.1891	1/1:107:0,107,0:0:0:107,0:3685,0:-309.313,-32.2102,0,-309.313,-32.2102,-309.313	1/2:88:1,48,39:1:35:48,39:1681,1389:-236.078,-110.324,-98.7224,-123.2,0,-114.308	1/2:78:0,33,45:0:0:33,45:1156,1620:-221.797,-132.515,-122.581,-89.6269,0,-76.0805	1/1:88:0,88,0:0:0:88,0:3097,0:-269.377,-26.4906,0,-269.377,-26.4906,-269.377	1/2:56:0,29,27:0:0:29,27:1031,968:-158.486,-79.2646,-70.5347,-79.5693,0,-71.4415	1/1:70:0,70,0:0:0:70,0:2462,0:-206.334,-21.0721,0,-206.334,-21.0721,-206.334	1/1:81:0,81,0:0:0:81,0:2809,0:-235.603,-24.3834,0,-235.603,-24.3834,-235.603	1/1:49:0,49,0:0:0:49,0:1730,0:-145.233,-14.7505,0,-145.233,-14.7505,-145.233	1/1:315:0,312,2:0:0:312,2:10933,72:-949.768,-93.9214,0,-943.893,-88.0452,-943.291	1/2:231:0,139,91:0:0:139,91:4908,3234:-640.674,-263.406,-221.563,-377.259,0,-349.865	1/1:190:0,188,0:0:0:188,0:6589,0:-576.709,-56.5936,0,-576.709,-56.5936,-576.709	1/2:118:0,44,74:0:0:44,74:1546,2645:-337.178,-215.891,-202.645,-121.633,0,-99.3572	1/2:157:0,58,98:0:0:58,98:2061,3490:-442.787,-284.465,-267.005,-158.424,0,-128.923	1/2:81:0,31,50:0:0:31,50:1096,1792:-230.872,-146.407,-137.075,-84.8099,0,-69.7584	1/1:497:0,489,3:0:0:489,3:17377,108:-1528.21,-147.204,0,-1519.4,-138.364,-1518.49	1/1:345:0,341,0:0:0:341,0:12016,0:-1028.36,-102.651,0,-1028.36,-102.651,-1028.36	1/1:61:0,61,0:0:0:61,0:2127,0:-182.185,-18.3628,0,-182.185,-18.3628,-182.185	1/2:410:0,213,195:0:0:213,195:7585,7001:-1174.25,-570.962,-506.843,-603.322,0,-544.621	1/2:165:0,84,78:0:0:84,78:2999,2795:-459.19,-227.766,-202.479,-231.474,0,-207.994	1/1:176:0,175,0:0:0:175,0:6149,0:-534.224,-52.6803,0,-534.224,-52.6803,-534.224	1/1:7:0,7,0:0:0:7,0:238,0:-20.2906,-2.10721,0,-20.2906,-2.10721,-20.2906	1/1:11:0,11,0:0:0:11,0:387,0:-33.3567,-3.31133,0,-33.3567,-3.31133,-33.3567	1/1:2:0,2,0:0:0:2,0:72,0:-6.35768,-0.60206,0,-6.35768,-0.60206,-6.35768	2/2:4:0,0,4:0:0:0,4:0,144:-13.2421,-13.2421,-13.2421,-1.20412,-1.20412,0	1/1:16:0,16,0:0:0:16,0:526,0:-44.4713,-4.81648,0,-44.4713,-4.81648,-44.4713	1/2:289:0,153,132:0:0:153,132:5418,4748:-816.74,-387.449,-341.391,-429.377,0,-389.641	1/1:384:0,379,1:0:0:379,1:13214,36:-1130.01,-114.09,0,-1127.08,-111.144,-1126.78	1/1:69:0,69,0:0:0:69,0:2399,0:-200.556,-20.7711,0,-200.556,-20.7711,-200.556	1/2:6:0,4,2:0:0:4,2:141,72:-17.007,-6.23466,-5.03054,-11.1233,0,-10.5213	1/1:236:0,234,0:0:0:234,0:8262,0:-706.671,-70.441,0,-706.671,-70.441,-706.671	1/1:37:0,37,0:0:0:37,0:1317,0:-112.845,-11.1381,0,-112.845,-11.1381,-112.845	1/2:119:0,77,41:0:0:77,41:2738,1472:-330.889,-120.113,-96.9339,-210.876,0,-198.533	1/2:102:0,60,41:0:0:60,41:2139,1472:-287.631,-120.153,-102.091,-167.568,0,-155.226	1/2:85:0,52,31:0:0:52,31:1806,1093:-230.637,-89.0773,-73.4237,-141.644,0,-132.312	1/2:175:0,80,94:0:0:80,94:2822,3365:-498.826,-274.416,-250.334,-224.48,0,-196.183	1/2:199:0,99,100:0:0:99,100:3444,3577:-550.434,-291.979,-262.177,-258.796,0,-228.693	1/1:329:0,326,2:0:0:326,2:11445,72:-994.566,-98.1358,0,-988.695,-92.1991,-988.093	1/1:179:0,177,1:0:0:177,1:6252,36:-543.969,-53.2823,0,-541.101,-50.4124,-540.8	1/2:158:0,86,72:0:0:86,72:3065,2539:-447.415,-207.054,-181.165,-240.709,0,-219.035	1/2:81:0,38,43:0:0:38,43:1333,1548:-232.364,-126.591,-115.152,-106.123,0,-93.1791	1/2:7:0,6,1:0:0:6,1:216,36:-20.2767,-3.29724,-1.49106,-17.3376,0,-17.0366	1/1:240:0,238,1:0:0:238,1:8394,36:-702.811,-71.6451,0,-699.873,-68.6378,-699.572	1/1:59:0,55,0:0:0:55,0:1949,0:-170.583,-16.5567,0,-170.583,-16.5567,-170.583	1/2:7:0,6,1:0:0:6,1:196,36:-17.6248,-3.29724,-1.49106,-14.6788,0,-14.3778	1/2:181:0,103,77:0:0:103,77:3666,276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chr06	2583593	.	T	C	20624.1	PASS	AB=0.516129;ABP=8.33391;AC=45;AF=0.241935;AN=186;AO=1248;CIGAR=1X;DP=5783;DPB=5783;DPRA=0.977908;EPP=2713.01;EPPR=9850.64;GTI=3;LEN=1;MEANALT=1;MQM=59.9623;MQMR=59.9658;NS=93;NUMALT=1;ODDS=2.40203;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44508;QR=162369;RO=4535;RPL=1248;RPP=2713.01;RPPR=9850.64;RPR=0;RUN=1;SAF=0;SAP=2713.01;SAR=1248;SRF=0;SRP=9850.64;SRR=4535;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/0:82:82,0:82:2921:0:0:0,-24.6845,-263.116	0/1:127:59,68:59:2105:68:2436:-181.256,0,-151.478	0/0:203:203,0:203:7254:0:0:0,-61.1091,-652.911	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:47:20,27:20:716:27:956:-72.2073,0,-50.6193	0/1:73:25,48:25:896:48:1720:-133.109,0,-58.9852	0/1:91:43,48:43:1544:48:1724:-128.047,0,-111.859	0/1:53:26,27:26:932:27:964:-71.1222,0,-68.2443	0/0:90:89,1:89:3177:1:36:0,-23.4944,-282.555	0/1:80:41,39:41:1476:39:1403:-102.487,0,-109.054	0/1:40:25,15:25:900:15:540:-36.8953,0,-69.2798	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:61:34,27:34:1203:27:964:-68.714,0,-90.2122	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:56:56,0:56:1981:0:0:0,-16.8577,-178.072	0/1:124:62,62:62:2232:62:2198:-160.754,0,-163.816	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:63:33,30:33:1184:30:1046:-75.481,0,-87.9034	0/1:52:27,25:27:972:25:885:-64.313,0,-72.1443	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/0:145:145,0:145:5196:0:0:0,-43.6493,-467.757	0/0:165:165,0:165:5928:0:0:0,-49.6699,-533.599	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:137:76,61:76:2689:61:2158:-153.243,0,-201.014	0/1:59:21,38:21:756:38:1360:-104.94,0,-50.6065	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.653	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:239:110,129:110:3933:129:4600:-342.209,0,-282.215	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	.:.:.:.:.:.:.:.	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:24:16,8:16:561:8:288:-19.0427,0,-43.5461	0/1:71:35,36:35:1260:36:1292:-95.2025,0,-92.3324	0/1:46:27,19:27:968:19:680:-47.6818,0,-73.59	0/1:36:20,16:20:716:16:576:-41.3379,0,-53.9306	0/1:41:17,24:17:612:24:860:-65.3796,0,-43.0712	0/0:75:72,3:72:2592:3:108:0,-12.5021,-223.453	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:76:55,21:55:1972:21:752:-45.128,0,-154.877	0/1:70:43,27:43:1548:27:968:-66.3653,0,-118.541	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:133:68,65:68:2440:65:2306:-167.761,0,-179.818	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:45:17,28:17:612:28:973:-74.3337,0,-41.8671	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:177:177,0:177:6344:0:0:0,-53.2823,-571.034	0/0:95:92,3:92:3300:3:104:0,-18.895,-287.516	0/0:22:22,0:22:777:0:0:0,-6.62266,-70.2504	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:82:77,5:77:2749:5:180:0,-8.13239,-231.099	0/0:111:110,1:110:3956:1:32:0,-30.215,-353.03	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:22:7,15:7:252:15:536:-41.9522,0,-16.4063	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:124:54,70:54:1928:70:2492:-187.204,0,-136.469	0/1:64:30,34:30:1076:34:1212:-90.1204,0,-77.8869	0/0:155:155,0:155:5515:0:0:0,-46.6596,-496.474	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:117:116,1:116:4153:1:36:0,-31.6222,-369.925	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.997	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/1:55:30,25:30:1080:25:879:-62.8701,0,-80.9566	0/0:138:133,5:133:4776:5:180:0,-24.9901,-413.443	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.405	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:60:19,41:19:684:41:1472:-114.714,0,-43.8285	0/1:127:41,86:41:1456:86:3080:-239.197,0,-93.1052	0/0:55:55,0:55:1950:0:0:0,-16.5566,-175.772	0/0:112:112,0:112:3997:0:0:0,-33.7154,-359.919
chr06	2595357	.	T	C	150872	PASS	AB=0.394666;ABP=433.022;AC=140;AF=0.744681;AN=188;AO=7175;CIGAR=1X;DP=10122;DPB=10122;DPRA=10.0789;EPP=15583.3;EPPR=6382.8;GTI=3;LEN=1;MEANALT=1.07692;MQM=59.9992;MQMR=60;NS=94;NUMALT=1;ODDS=0.277464;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256193;QR=105337;RO=2938;RPL=7175;RPP=15583.3;RPPR=6382.8;RPR=0;RUN=1;SAF=0;SAP=15583.3;SAR=7175;SRF=0;SRP=6382.8;SRR=2938;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:21,49:21:756:49:1733:-135.181,0,-47.2951	1/1:68:0,68:0:0:68:2401:-216.346,-20.47,0	0/1:160:75,85:75:2700:85:3017:-223.593,0,-195.079	1/1:179:3,176:3:108:176:6230:-550.721,-43.8092,0	0/1:95:61,34:61:2196:34:1212:-80.7885,0,-169.307	0/1:59:45,14:45:1620:14:489:-26.5781,0,-128.329	1/1:53:0,53:0:0:53:1878:-169.295,-15.9546,0	0/1:164:103,61:103:3696:61:2184:-147.457,0,-283.473	0/1:137:65,72:65:2332:72:2579:-191.117,0,-168.898	0/1:121:86,35:86:3084:35:1252:-76.5604,0,-241.363	0/1:85:62,23:62:2232:23:809:-47.5408,0,-175.556	1/1:115:0,114:0:0:114:4073:-366.397,-34.3174,0	0/1:107:59,48:59:2105:48:1710:-121.974,0,-157.507	0/1:94:69,25:69:2467:25:896:-52.6635,0,-193.987	1/1:111:0,111:0:0:111:3974:-357.85,-33.4143,0	0/1:76:47,29:47:1688:29:1036:-70.6756,0,-129.329	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:32:0,32:0:0:32:1142:-103.089,-9.63296,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:248:0,247:0:0:247:8798:-791.447,-74.3544,0	0/1:234:151,83:151:5412:83:2953:-195.562,0,-416.768	1/1:155:0,155:0:0:155:5530:-497.825,-46.6597,0	0/1:81:35,46:35:1260:46:1644:-123.865,0,-89.3221	0/1:118:99,19:99:3533:19:676:-25.6465,0,-282.657	0/1:136:66,70:66:2372:70:2516:-185.751,0,-172.798	1/1:248:0,248:0:0:248:8872:-798.464,-74.6554,0	1/1:351:0,351:0:0:351:12544:-1128.79,-105.662,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	0/1:301:142,158:142:5089:158:5668:-419.609,0,-367.522	0/1:158:134,24:134:4808:24:860:-30.1591,0,-385.312	1/1:67:0,67:0:0:67:2385:-214.906,-20.169,0	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	1/1:17:0,17:0:0:17:606:-54.8711,-5.11751,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:292:175,117:175:6288:117:4165:-287.132,0,-478.109	1/1:133:1,132:1:36:132:4710:-420.46,-36.4387,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	1/1:77:1,75:1:36:75:2683:-238.116,-19.6398,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:152:89,63:89:3174:63:2237:-155.836,0,-240.125	0/1:78:40,38:40:1440:38:1352:-98.4995,0,-106.417	0/1:106:65,41:65:2336:41:1464:-100.147,0,-178.59	0/1:173:69,104:69:2472:104:3732:-284.002,0,-170.656	0/1:141:51,90:51:1836:90:3232:-248.656,0,-123.075	1/1:189:2,187:2:68:187:6682:-594.998,-50.437,0	1/1:122:0,122:0:0:122:4379:-394.282,-36.7257,0	0/1:128:69,59:69:2469:59:2101:-150.826,0,-183.93	0/0:198:185,13:185:6599:13:468:0,-17.1443,-551.528	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	1/1:120:0,120:0:0:120:4289:-386.186,-36.1236,0	1/1:33:0,33:0:0:33:1157:-104.434,-9.93399,0	0/1:15:12,3:12:432:3:104:-5.18736,0,-34.7057	0/1:150:92,58:92:3300:58:2058:-140.335,0,-252.064	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:25:20,5:20:720:5:180:-9.02631,0,-57.603	0/1:141:99,40:99:3556:40:1440:-87.6947,0,-278.044	1/1:121:1,120:1:36:120:4296:-383.218,-32.8264,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	1/1:195:0,195:0:0:195:6963:-626.734,-58.7009,0	1/1:142:3,139:3:108:139:4957:-436.204,-32.6711,0	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	1/1:80:3,77:3:108:77:2746:-237.307,-14.0072,0	1/1:186:1,185:1:36:185:6581:-588.775,-52.3933,0	1/1:124:0,124:0:0:124:4417:-397.702,-37.3277,0	1/1:44:0,44:0:0:44:1565:-141.14,-13.2453,0	1/1:83:0,83:0:0:83:2960:-266.632,-24.9855,0	1/1:50:0,50:0:0:50:1798:-162.102,-15.0515,0	0/1:44:37,7:37:1317:7:252:-9.78364,0,-105.585	1/1:141:1,140:1:36:140:4987:-445.381,-38.847,0	0/1:126:80,46:80:2853:46:1656:-111.399,0,-219.077	0/1:269:169,100:169:6060:100:3550:-238.73,0,-464.525	1/1:162:0,162:0:0:162:5792:-521.395,-48.7669,0	1/1:104:0,104:0:0:104:3732:-336.08,-31.3071,0	1/1:111:3,107:3:108:107:3840:-335.72,-23.398,0	0/1:33:24,9:24:864:9:324:-19.5719,0,-68.1486	1/1:108:0,108:0:0:108:3869:-348.403,-32.5112,0	1/1:131:0,131:0:0:131:4647:-418.391,-39.4349,0	1/1:194:0,192:0:0:192:6859:-617.02,-57.7978,0	1/1:63:0,63:0:0:63:2254:-203.123,-18.9649,0	1/1:91:0,91:0:0:91:3249:-292.63,-27.3937,0	0/1:96:68,28:68:2435:28:1008:-62.1375,0,-190.506	1/1:173:3,170:3:104:170:6087:-538.228,-42.3754,0	0/1:41:30,11:30:1076:11:392:-23.2778,0,-84.8106	1/1:78:0,78:0:0:78:2783:-250.711,-23.4803,0	1/1:99:0,99:0:0:99:3531:-317.999,-29.802,0	1/1:27:0,27:0:0:27:971:-87.7079,-8.12781,0	0/1:119:91,28:91:3264:28:1004:-54.8533,0,-258.157	0/1:102:72,30:72:2588:30:1068:-65.727,0,-202.463	1/1:172:0,172:0:0:172:6127:-551.528,-51.7772,0	1/1:119:0,119:0:0:119:4268:-384.297,-35.8226,0
chr06	2695988	.	TCAT	CCAT,CCAA	139086	PASS	AB=0.451444,0.54229;ABP=61.8441,47.6407;AC=143,43;AF=0.768817,0.231183;AN=186;AO=4914,1577;CIGAR=1X3M,1X2M1X;DP=6539;DPB=6539;DPRA=71.0652,1.12335;EPP=10638.9,3427.42;EPPR=0;GTI=2;LEN=1,4;MEANALT=2.02174,2.45098;MQM=59.9383,59.4585;MQMR=0;NS=93;NUMALT=2;ODDS=2.17274;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=175055,54912;QR=0;RO=0;RPL=4,0;RPP=10638.9,3427.42;RPPR=0;RPR=4910,1577;RUN=1,1;SAF=4914,1577;SAP=10673.6,3427.42;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,11,30:0:0:11,30:388,1054:-117.719,-86.125,-82.8137,-31.946,0,-22.9151	1/1:71:0,71,0:0:0:71,0:2531,0:-228.041,-21.3731,0,-228.041,-21.3731,-228.041	1/2:53:0,22,31:0:0:22,31:784,1090:-152.984,-89.0766,-82.4539,-64.2613,0,-54.9293	1/1:94:0,93,1:0:0:93,1:3315,29:-298.274,-27.9958,0,-295.966,-25.3972,-295.665	1/2:19:0,4,15:0:0:4,15:140,529:-54.8131,-43.4231,-42.219,-11.7405,0,-7.22501	1/2:24:0,14,10:0:0:14,10:500,352:-69.7673,-28.9995,-24.7851,-41.1218,0,-38.1115	1/1:59:0,59,0:0:0:59,0:2108,0:-189.979,-17.7608,0,-189.979,-17.7608,-189.979	1/2:117:0,47,68:0:0:47,68:1684,2343:-327.568,-190.221,-176.073,-137.401,0,-116.931	1/2:86:0,45,41:0:0:45,41:1595,1442:-247.661,-117.72,-104.174,-130.293,0,-117.951	1/2:102:0,40,61:0:0:40,61:1424,2154:-291.48,-175.504,-163.463,-116.077,0,-97.7146	1/2:71:0,33,38:0:0:33,38:1171,1278:-199.28,-103.865,-93.9311,-95.7608,0,-84.3217	1/1:83:0,83,0:0:0:83,0:2947,0:-265.465,-24.9855,0,-265.465,-24.9855,-265.465	1/2:85:0,48,37:0:0:48,37:1712,1302:-245.882,-106.319,-91.8701,-139.916,0,-128.778	1/2:116:0,72,44:0:0:72,44:2552,1551:-334.496,-126.591,-104.917,-208.258,0,-195.012	1/1:83:0,83,0:0:0:83,0:2959,0:-266.544,-24.9855,0,-266.544,-24.9855,-266.544	1/2:59:0,32,27:0:0:32,27:1140,951:-170.691,-77.7687,-68.1358,-93.2762,0,-85.1484	1/1:83:0,83,0:0:0:83,0:2946,0:-265.374,-24.9855,0,-265.374,-24.9855,-265.374	1/1:60:0,60,0:0:0:60,0:2143,0:-193.129,-18.0618,0,-193.129,-18.0618,-193.129	1/1:53:0,52,0:0:0:52,0:1843,0:-165.79,-15.6536,0,-165.79,-15.6536,-165.79	1/1:70:0,69,0:0:0:69,0:2468,0:-222.014,-20.7711,0,-222.014,-20.7711,-222.014	1/2:124:0,44,80:0:0:44,80:1568,2792:-355.242,-227.429,-214.184,-128.166,0,-104.084	1/1:63:0,62,0:0:0:62,0:2228,0:-200.416,-18.6639,0,-200.416,-18.6639,-200.416	1/2:63:0,14,48:0:0:14,48:483,1658:-173.907,-134.669,-130.455,-39.2426,0,-24.7932	1/2:110:0,41,68:0:0:41,68:1460,2352:-310.093,-191.092,-178.749,-118.994,0,-98.5239	1/2:26:0,10,16:0:0:10,16:360,553:-74.6583,-45.2786,-42.2683,-29.734,0,-24.9175	1/1:191:0,188,0:0:0:188,0:6704,0:-603.02,-56.5936,0,-603.02,-56.5936,-603.02	1/1:104:0,104,0:0:0:104,0:3716,0:-334.642,-31.3071,0,-334.642,-31.3071,-334.642	1/1:52:0,52,0:0:0:52,0:1843,0:-166.08,-15.6536,0,-166.08,-15.6536,-166.08	1/2:164:0,68,95:0:0:68,95:2432,3338:-469.802,-271.491,-251.021,-198.316,0,-169.718	1/2:69:0,30,39:0:0:30,39:1058,1353:-196.471,-110.322,-101.291,-86.4987,0,-74.7585	1/1:52:0,51,1:0:0:51,1:1816,36:-163.362,-15.3525,0,-160.424,-12.0553,-160.123	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:6:0,3,0:0:0:3,0:108,0:-9.71534,-0.90309,0,-9.71534,-0.90309,-9.71534	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:232:0,107,125:0:0:107,125:3835,4363:-667.693,-355.181,-322.971,-312.866,0,-275.237	1/1:110:0,106,3:0:0:106,3:3786,97:-340.614,-31.9092,0,-332.791,-24.0306,-331.888	1/1:74:0,74,0:0:0:74,0:2635,0:-237.389,-22.2762,0,-237.389,-22.2762,-237.389	.:.:.:.:.:.:.:.	1/1:55:0,55,0:0:0:55,0:1964,0:-177.035,-16.5567,0,-177.035,-16.5567,-177.035	1/1:45:0,43,1:0:0:43,1:1540,30:-138.56,-12.9443,0,-136.164,-10.5769,-135.863	1/2:79:0,28,51:0:0:28,51:1004,1763:-225.476,-143.583,-135.154,-82.247,0,-66.8945	1/2:82:0,47,35:0:0:47,35:1672,1212:-235.013,-98.7442,-84.5958,-136.619,0,-126.083	1/2:82:0,49,33:0:0:49,33:1744,1134:-234.573,-92.4271,-77.6766,-142.494,0,-132.56	1/2:61:0,28,33:0:0:28,33:1000,1164:-176.639,-95.1078,-86.679,-81.8865,0,-71.9525	1/2:51:0,24,27:0:0:24,27:856,936:-146.194,-76.4095,-69.1848,-70.1364,0,-62.0086	1/1:69:0,65,1:0:0:65,1:2332,35:-209.799,-19.567,0,-206.951,-16.7159,-206.65	1/1:87:0,86,0:0:0:86,0:3077,0:-276.797,-25.8886,0,-276.797,-25.8886,-276.797	1/2:67:0,28,39:0:0:28,39:1000,1345:-191.136,-109.601,-101.172,-81.8865,0,-70.1464	1/2:141:0,70,69:0:0:70,69:2495,2442:-402.33,-198.953,-177.881,-203.425,0,-182.654	1/2:6:0,2,4:0:0:2,4:72,142:-17.8016,-11.9251,-11.323,-6.23466,0,-5.03054	1/1:58:0,57,0:0:0:57,0:2022,0:-181.892,-17.1587,0,-181.892,-17.1587,-181.892	1/1:30:0,30,0:0:0:30,0:1063,0:-95.98,-9.0309,0,-95.98,-9.0309,-95.98	1/2:7:0,5,2:0:0:5,2:180,71:-20.8306,-6.14,-4.63485,-15.0469,0,-14.4449	1/2:87:0,36,51:0:0:36,51:1288,1759:-248.251,-143.217,-132.38,-105.387,0,-90.034	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/2:9:0,1,8:0:0:1,8:36,275:-25.6137,-22.6745,-22.3734,-3.29724,0,-0.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chr06	2714376	.	TG	CG	22399.9	PASS	AB=0.381286;ABP=509.297;AC=43;AF=0.228723;AN=188;AO=1585;CIGAR=1X1M;DP=12183;DPB=12183;DPRA=0.7192;EPP=3444.79;EPPR=22972.8;GTI=7;LEN=1;MEANALT=1.1;MQM=59.9962;MQMR=59.9933;NS=94;NUMALT=1;ODDS=0.0151004;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56765;QR=374862;RO=10578;RPL=0;RPP=3444.79;RPPR=22972.8;RPR=1585;RUN=1;SAF=1585;SAP=3444.79;SAR=0;SRF=10578;SRP=22972.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:36,31:36:1249:31:1104:-79.1422,0,-92.1802	0/0:208:207,0:207:7316:0:0:0,-62.3132,-658.133	0/1:166:114,52:114:4052:52:1868:-118.428,0,-314.894	0/0:405:405,0:405:14309:0:0:0,-121.917,-1287.58	0/1:74:49,25:49:1710:25:896:-58.6841,0,-131.904	0/1:46:25,21:25:877:21:752:-54.1589,0,-65.3983	0/0:108:107,0:107:3773:0:0:0,-32.2102,-339.559	0/1:228:144,83:144:5109:83:2958:-197.76,0,-391.261	0/1:114:61,53:61:2180:53:1904:-137.32,0,-162.148	0/1:129:83,46:83:2932:46:1645:-109.506,0,-225.279	0/1:49:29,20:29:1032:20:716:-50.0172,0,-78.4427	0/0:66:66,0:66:2327:0:0:0,-19.868,-209.687	0/1:70:34,36:34:1220:36:1291:-95.4217,0,-89.0349	0/1:48:28,20:28:989:20:711:-49.8662,0,-74.8739	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.152	0/1:42:28,14:28:997:14:491:-31.8779,0,-77.4006	0/0:58:58,0:58:2042:0:0:0,-17.4597,-184.048	0/0:71:71,0:71:2549:0:0:0,-21.3731,-229.66	0/0:34:34,0:34:1222:0:0:0,-10.235,-110.287	0/0:308:306,2:306:10844:2:72:0,-85.8805,-969.026	0/1:200:141,59:141:4943:59:2105:-129.511,0,-384.815	0/0:158:158,0:158:5593:0:0:0,-47.5627,-503.494	0/1:115:82,33:82:2899:33:1188:-72.6101,0,-226.526	0/1:157:81,76:81:2860:76:2707:-196.612,0,-210.374	0/1:90:47,43:47:1680:43:1543:-112.07,0,-124.394	0/0:518:517,1:517:18317:1:36:0,-152.335,-1644.53	0/0:287:284,0:284:10072:0:0:0,-85.4925,-905.689	0/0:42:42,0:42:1505:0:0:0,-12.6433,-135.745	0/1:265:150,115:150:5307:115:4124:-291.571,0,-397.993	0/1:114:65,49:65:2266:49:1764:-124.726,0,-169.881	0/0:130:129,1:129:4527:1:36:0,-35.5356,-404.001	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89684	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1426	0/1:208:119,89:119:4237:89:3200:-225.608,0,-318.896	0/0:306:305,0:305:10798:0:0:0,-91.8141,-971.371	0/0:69:69,0:69:2452:0:0:0,-20.7711,-220.934	0/0:3:3,0:3:95:0:0:0,-0.90309,-8.86337	0/0:297:297,0:297:10532:0:0:0,-89.4059,-947.8	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4444	0/1:188:122,66:122:4318:66:2372:-157.144,0,-332.205	0/1:88:40,47:40:1399:47:1684:-125.298,0,-99.6536	0/1:60:32,28:32:1138:28:983:-70.7207,0,-84.667	0/1:162:96,65:96:3404:65:2328:-160.994,0,-257.789	0/1:188:143,45:143:5074:45:1604:-88.0565,0,-400.213	0/0:312:312,0:312:10997:0:0:0,-93.9214,-989.636	0/0:193:192,0:192:6747:0:0:0,-57.7978,-606.99	0/1:175:137,38:137:4877:38:1360:-70.0203,0,-386.403	0/1:155:108,47:108:3814:47:1692:-105.907,0,-296.797	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:250:250,0:250:8915:0:0:0,-75.2575,-802.335	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.624	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:170:110,60:110:3877:60:2151:-142.682,0,-297.949	0/0:62:61,1:61:2128:1:36:0,-15.0656,-188.186	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:29:21,8:21:726:8:288:-17.5375,0,-56.9277	0/1:114:74,40:74:2633:40:1436:-95.2202,0,-202.899	0/0:82:81,0:81:2858:0:0:0,-24.3834,-257.096	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:372:372,0:372:13189:0:0:0,-111.983,-1186.82	0/0:329:328,0:328:11659:0:0:0,-98.7378,-1048.82	0/0:80:80,0:80:2838:0:0:0,-24.0824,-255.658	0/0:172:172,0:172:6066:0:0:0,-51.7772,-546.046	0/0:264:263,0:263:9387:0:0:0,-79.1709,-844.433	0/0:154:153,1:153:5436:1:36:0,-42.7603,-485.772	0/0:18:18,0:18:642:0:0:0,-5.41854,-58.1103	0/0:108:107,0:107:3800:0:0:0,-32.2102,-341.991	0/0:71:71,0:71:2517:0:0:0,-21.3731,-226.781	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9281	0/0:196:196,0:196:6957:0:0:0,-59.0019,-626.2	0/1:116:89,27:89:3196:27:964:-52.1573,0,-252.944	0/1:170:103,67:103:3613:67:2400:-165.077,0,-274.201	0/0:295:294,0:294:10426:0:0:0,-88.5028,-937.904	0/0:141:141,0:141:5011:0:0:0,-42.4452,-451.141	0/0:201:201,0:201:7141:0:0:0,-60.507,-642.749	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/0:215:215,0:215:7627:0:0:0,-64.7214,-686.468	0/0:153:153,0:153:5440:0:0:0,-46.0576,-489.729	0/0:301:301,0:301:10703:0:0:0,-90.61,-963.182	0/0:88:88,0:88:3103:0:0:0,-26.4906,-279.497	0/0:70:70,0:70:2483:0:0:0,-21.0721,-223.721	0/1:80:41,38:41:1466:38:1360:-98.5595,0,-108.095	0/0:142:141,1:141:5005:1:36:0,-39.148,-447	0/1:56:36,20:36:1294:20:716:-47.91,0,-99.9063	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.101	0/0:62:62,0:62:2197:0:0:0,-18.6639,-197.995	0/0:29:28,1:28:984:1:36:0,-5.13159,-85.2733	0/1:53:26,27:26:914:27:972:-71.8433,0,-66.6189	0/1:58:18,40:18:626:40:1440:-112.438,0,-39.2038	0/0:267:267,0:267:9517:0:0:0,-80.375,-856.49	0/0:101:101,0:101:3588:0:0:0,-30.404,-323.126
chr06	2714423	.	G	T	56922	PASS	AB=0.397893;ABP=630.486;AC=44;AF=0.234043;AN=188;AO=2774;CIGAR=1X;DP=20157;DPB=20157;DPRA=0.966149;EPP=6026.67;EPPR=37723.7;GTI=6;LEN=1;MEANALT=1.12727;MQM=59.9798;MQMR=59.981;NS=94;NUMALT=1;ODDS=3.74597;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99091;QR=616435;RO=17371;RPL=1555;RPP=91.3847;RPPR=1298.31;RPR=1219;RUN=1;SAF=1555;SAP=91.3847;SAR=1219;SRF=10295;SRP=1298.31;SRR=7076;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:35,33:35:1256:33:1184:-86.3983,0,-92.8752	0/0:205:205,0:205:7328:0:0:0,-61.7111,-659.568	0/1:165:115,50:115:4079:50:1792:-111.893,0,-317.627	0/0:637:635,1:635:22497:1:36:0,-188.217,-2020.56	0/1:110:73,37:73:2598:37:1311:-85.1768,0,-200.955	0/1:45:25,20:25:883:20:711:-50.7693,0,-66.2411	0/0:342:340,1:340:12023:1:36:0,-99.4128,-1078.34	0/1:224:142,82:142:5056:82:2920:-195.603,0,-387.755	0/1:111:61,50:61:2162:50:1788:-127.788,0,-161.432	0/1:200:125,75:125:4455:75:2688:-181.959,0,-340.916	0/1:128:71,57:71:2493:57:2036:-144.98,0,-186.091	0/0:64:64,0:64:2274:0:0:0,-19.2659,-204.921	0/1:71:34,37:34:1211:37:1319:-97.638,0,-87.9224	0/1:147:85,62:85:3027:62:2227:-156.443,0,-228.41	0/0:171:171,0:171:6094:0:0:0,-51.4761,-548.563	0/1:99:60,37:60:2105:37:1319:-89.4516,0,-160.159	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.096	0/0:71:71,0:71:2507:0:0:0,-21.3731,-225.881	0/0:33:33,0:33:1166:0:0:0,-9.93399,-105.246	0/0:575:573,2:573:20294:2:72:0,-166.256,-1819.15	0/1:335:228,107:228:8122:107:3808:-242.072,0,-630.156	0/0:260:259,0:259:9223:0:0:0,-77.9668,-829.684	0/1:235:143,92:143:5045:92:3287:-225.307,0,-383.457	0/1:276:155,121:155:5479:121:4324:-306.253,0,-410.157	0/1:175:99,76:99:3521:76:2702:-190.743,0,-264.42	0/0:905:902,3:902:31862:3:104:0,-262.729,-2856.93	0/0:581:581,0:581:20725:0:0:0,-174.898,-1862.93	0/0:91:91,0:91:3243:0:0:0,-27.3937,-292.092	0/1:571:338,233:338:11974:233:8351:-579.693,0,-905.635	0/1:245:126,119:126:4496:119:4255:-309.366,0,-331.034	0/0:317:317,0:317:11246:0:0:0,-95.4265,-1012.03	0/1:8:2,6:2:63:6:216:-17.3823,0,-3.57491	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:419:230,189:230:8118:189:6750:-481.442,0,-604.515	0/0:499:498,0:498:17711:0:0:0,-149.913,-1593.13	0/0:70:70,0:70:2485:0:0:0,-21.0721,-223.902	0/1:7:4,3:4:135:3:108:-7.96796,0,-10.3753	0/0:448:448,0:448:15983:0:0:0,-134.861,-1438.16	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.711	0/1:321:196,124:196:6942:124:4418:-301.1,0,-528.078	0/1:162:82,79:82:2893:79:2813:-204.583,0,-211.781	0/1:126:64,62:64:2259:62:2210:-161.234,0,-165.643	0/1:246:134,111:134:4760:111:3963:-282.789,0,-354.486	0/1:180:139,41:139:4974:41:1467:-78.1399,0,-393.622	0/0:452:451,0:451:16027:0:0:0,-135.765,-1441.8	0/0:329:329,0:329:11678:0:0:0,-99.0389,-1050.9	0/1:319:225,94:225:7989:94:3348:-205.507,0,-623.006	0/1:291:187,104:187:6647:104:3728:-248.058,0,-510.712	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/0:243:243,0:243:8624:0:0:0,-73.1503,-776.161	0/0:144:144,0:144:5057:0:0:0,-43.3483,-455.19	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:319:210,108:210:7430:108:3851:-250.699,0,-572.666	0/0:126:125,1:125:4405:1:36:0,-34.3315,-393.025	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:49:33,16:33:1169:16:576:-37.4245,0,-90.7648	0/1:206:133,73:133:4704:73:2620:-174.035,0,-361.511	0/0:197:197,0:197:6968:0:0:0,-59.3029,-627.194	0/1:16:7,9:7:252:9:311:-23.5072,0,-18.2125	0/0:600:600,0:600:21306:0:0:0,-180.618,-1917.02	0/0:500:498,2:498:17742:2:72:0,-143.678,-1589.56	0/0:150:150,0:150:5351:0:0:0,-45.1545,-481.724	0/0:273:273,0:273:9737:0:0:0,-82.1812,-876.279	0/0:414:412,2:412:14605:2:72:0,-117.79,-1307.37	0/0:272:271,1:271:9654:1:36:0,-78.2819,-865.217	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:102:102,0:102:3639:0:0:0,-30.7051,-327.715	0/0:171:169,2:169:5964:2:72:0,-44.6394,-530.019	0/1:39:19,20:19:672:20:720:-53.3886,0,-49.0667	0/0:187:187,0:187:6579:0:0:0,-56.2926,-592.196	0/1:114:87,27:87:3116:27:955:-51.9466,0,-246.349	0/1:317:204,113:204:7233:113:4023:-266.831,0,-555.602	0/0:599:599,0:599:21273:0:0:0,-180.317,-1914.04	0/0:135:135,0:135:4779:0:0:0,-40.639,-430.27	0/0:195:194,0:194:6888:0:0:0,-58.3998,-619.631	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:362:362,0:362:12875:0:0:0,-108.973,-1158.57	0/0:152:152,0:152:5398:0:0:0,-45.7566,-485.952	0/0:569:569,0:569:20216:0:0:0,-171.286,-1818.97	0/0:213:213,0:213:7544:0:0:0,-64.1194,-677.986	0/0:152:152,0:152:5344:0:0:0,-45.7566,-481.097	0/1:163:87,76:87:3103:76:2712:-195.256,0,-230.43	0/0:304:303,1:303:10633:1:36:0,-87.9148,-953.298	0/1:56:36,20:36:1254:20:720:-48.2711,0,-96.3029	0/0:62:62,0:62:2181:0:0:0,-18.6639,-196.555	0/0:61:61,0:61:2153:0:0:0,-18.3628,-194.036	0/0:104:104,0:104:3712:0:0:0,-31.3071,-334.283	0/1:181:103,78:103:3645:78:2796:-197.394,0,-273.641	0/1:124:41,83:41:1464:83:2976:-230.745,0,-94.7283	0/0:450:449,1:449:15973:1:32:0,-132.264,-1434.04	0/0:211:211,0:211:7467:0:0:0,-63.5173,-672.083
chr06	2714450	.	C	T	198380	PASS	AB=0.579116;ABP=206.077;AC=143;AF=0.760638;AN=188;AO=9170;CIGAR=1X;DP=10751;DPB=10751;DPRA=115.591;EPP=19906.7;EPPR=3431.77;GTI=8;LEN=1;MEANALT=1.02151;MQM=59.9546;MQMR=59.9202;NS=94;NUMALT=1;ODDS=5.41164;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=326120;QR=56507;RO=1579;RPL=0;RPP=19915.4;RPPR=3431.77;RPR=9170;RUN=1;SAF=1;SAP=19906.7;SAR=9169;SRF=0;SRP=3431.77;SRR=1579;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:22,18:22:792:18:644:-46.2494,0,-59.5645	1/1:184:0,184:0:0:184:6543:-588.953,-55.3895,0	0/1:150:43,107:43:1536:107:3790:-295.717,0,-93.3786	1/1:241:0,241:0:0:241:8557:-770.127,-72.5482,0	0/1:36:11,25:11:392:25:896:-70.1233,0,-24.783	0/1:66:23,43:23:828:43:1528:-117.945,0,-54.9761	1/1:234:0,234:0:0:234:8321:-748.902,-70.441,0	0/1:126:62,64:62:2220:64:2296:-168.971,0,-162.135	0/1:107:47,60:47:1665:60:2152:-161.737,0,-117.297	0/1:73:32,41:32:1135:41:1461:-109.809,0,-80.4829	0/1:80:39,41:39:1396:41:1468:-108.334,0,-101.857	1/1:81:0,81:0:0:81:2881:-259.522,-24.3834,0	0/1:79:36,43:36:1292:43:1525:-113.761,0,-92.8024	0/1:101:42,59:42:1508:59:2108:-159.585,0,-105.611	1/1:93:0,93:0:0:93:3325:-299.466,-27.9958,0	0/1:61:29,32:29:1044:32:1122:-82.921,0,-75.912	1/1:95:0,95:0:0:95:3386:-304.949,-28.5979,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:72:0,72:0:0:72:2558:-230.467,-21.6742,0	1/1:275:1,274:1:36:274:9724:-871.516,-79.185,0	0/1:145:49,96:49:1764:96:3406:-263.104,0,-115.394	1/1:108:0,108:0:0:108:3860:-347.596,-32.5112,0	0/1:119:59,60:59:2111:60:2141:-157.133,0,-154.436	0/1:126:46,80:46:1656:80:2841:-217.993,0,-111.399	0/1:85:33,52:33:1188:52:1837:-140.021,0,-81.641	1/1:407:1,406:1:36:406:14325:-1285.4,-118.921,0	1/1:308:0,307:0:0:307:10915:-981.791,-92.4162,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	0/1:309:119,190:119:4276:190:6730:-512.749,0,-291.854	0/1:139:72,67:72:2576:67:2351:-169.983,0,-190.236	1/1:199:0,199:0:0:199:7053:-634.832,-59.905,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:218:101,117:101:3628:117:4150:-308.058,0,-261.1	1/1:201:0,201:0:0:201:7197:-647.653,-60.507,0	1/1:78:0,78:0:0:78:2808:-252.853,-23.4803,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:165:0,165:0:0:165:5874:-528.771,-49.67,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/1:141:61,80:61:2177:80:2838:-213.213,0,-153.747	0/1:77:33,44:33:1172:44:1576:-118.952,0,-82.6082	0/1:64:32,32:32:1137:32:1148:-84.3639,0,-83.371	0/1:88:47,41:47:1684:41:1460:-105.204,0,-125.356	0/1:99:49,50:49:1756:50:1773:-130.049,0,-128.522	1/1:152:0,152:0:0:152:5401:-486.219,-45.7566,0	1/1:137:0,137:0:0:137:4893:-440.513,-41.2411,0	0/1:143:56,87:56:2008:87:3101:-236.267,0,-137.946	0/1:140:56,84:56:1973:84:2997:-227.816,0,-135.694	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:260:0,260:0:0:260:9213:-829.145,-78.2678,0	1/1:79:0,79:0:0:79:2783:-250.705,-23.7814,0	0/1:27:10,17:10:360:17:600:-46.2014,0,-24.6165	0/1:155:48,107:48:1705:107:3816:-296.979,0,-107.074	1/1:65:0,65:0:0:65:2271:-204.648,-19.567,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:19:7,12:7:252:12:428:-33.1392,0,-17.3094	0/1:97:34,63:34:1216:63:2224:-171.222,0,-80.5467	1/1:117:0,117:0:0:117:4200:-378.18,-35.2205,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:238:0,238:0:0:238:8449:-760.413,-71.6451,0	1/1:177:1,176:1:36:176:6269:-560.706,-49.684,0	1/1:79:0,79:0:0:79:2825:-254.487,-23.7814,0	1/1:109:0,109:0:0:109:3890:-350.291,-32.8123,0	1/1:155:0,155:0:0:155:5494:-494.588,-46.6597,0	1/1:118:0,118:0:0:118:4179:-376.293,-35.5215,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:97:0,97:0:0:97:3442:-309.992,-29.1999,0	1/1:102:1,101:1:36:101:3612:-321.673,-27.1068,0	0/1:28:18,10:18:648:10:356:-23.9524,0,-50.223	1/1:171:0,171:0:0:171:6074:-546.764,-51.4761,0	0/1:66:40,26:40:1432:26:932:-64.3309,0,-109.31	0/1:156:49,107:49:1732:107:3832:-298.116,0,-109.156	1/1:298:0,297:0:0:297:10456:-940.755,-89.4059,0	1/1:107:0,107:0:0:107:3797:-341.929,-32.2102,0	1/1:115:0,115:0:0:115:4101:-369.275,-34.6185,0	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	1/1:161:0,161:0:0:161:5731:-515.909,-48.4658,0	1/1:125:0,125:0:0:125:4444:-400.133,-37.6288,0	1/1:274:0,274:0:0:274:9742:-876.727,-82.4822,0	1/1:123:0,123:0:0:123:4367:-392.884,-37.0267,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	0/1:87:40,47:40:1440:47:1692:-126.377,0,-103.708	1/1:163:1,162:1:36:162:5800:-518.516,-45.4696,0	0/1:41:16,25:16:572:25:900:-68.9788,0,-39.4712	1/1:81:0,81:0:0:81:2887:-260.067,-24.3834,0	1/1:95:0,95:0:0:95:3399:-306.114,-28.5979,0	1/1:74:0,74:0:0:74:2636:-237.487,-22.2762,0	0/1:137:53,84:53:1900:84:2989:-227.942,0,-130.035	0/1:66:44,22:44:1584:22:780:-50.6551,0,-122.984	1/1:183:1,182:1:36:182:6467:-578.515,-51.4902,0	1/1:108:0,108:0:0:108:3851:-346.784,-32.5112,0
chr06	2714456	.	A	G	31903.2	PASS	AB=0.411812;ABP=254.638;AC=45;AF=0.239362;AN=188;AO=1540;CIGAR=1X;DP=10877;DPB=10877;DPRA=0.710641;EPP=45.7009;EPPR=178.711;GTI=8;LEN=1;MEANALT=1.04082;MQM=59.9136;MQMR=59.963;NS=94;NUMALT=1;ODDS=7.14474;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54694;QR=333618;RO=9333;RPL=683;RPP=45.7009;RPPR=177.097;RPR=857;RUN=1;SAF=0;SAP=3347.08;SAR=1540;SRF=2;SRP=20252;SRR=9331;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:18,22:18:630:22:754:-56.1321,0,-44.9834	0/0:188:188,0:188:6738:0:0:0,-56.5936,-606.492	0/1:146:108,38:108:3880:38:1360:-78.7502,0,-305.015	0/0:244:244,0:244:8743:0:0:0,-73.4513,-786.855	0/1:37:26,11:26:936:11:392:-24.4819,0,-73.4214	0/1:66:44,22:44:1567:22:773:-50.0133,0,-121.453	0/0:236:236,0:236:8398:0:0:0,-71.0431,-755.827	0/1:129:67,62:67:2400:62:2195:-158.981,0,-177.424	0/1:105:61,44:61:2180:44:1573:-109.552,0,-164.858	0/1:71:41,30:41:1476:30:1068:-75.0589,0,-111.763	0/1:80:43,37:43:1527:37:1332:-96.1,0,-113.64	0/0:80:80,0:80:2833:0:0:0,-24.0824,-255.206	0/1:79:43,36:43:1539:36:1288:-92.4422,0,-115.021	0/1:96:56,40:56:2003:40:1421:-99.2865,0,-151.644	0/0:96:96,0:96:3426:0:0:0,-28.8989,-308.552	0/1:60:32,28:32:1143:28:1004:-72.6141,0,-85.1169	0/0:96:96,0:96:3439:0:0:0,-28.8989,-309.714	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:284:284,0:284:10155:0:0:0,-85.4925,-913.882	0/1:140:93,47:93:3312:47:1680:-109.343,0,-256.156	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/1:120:62,58:62:2216:58:2066:-150.087,0,-163.581	0/1:129:81,48:81:2882:48:1712:-115.533,0,-220.779	0/1:86:53,33:53:1896:33:1168:-79.5386,0,-145.03	0/0:408:407,1:407:14565:1:36:0,-119.222,-1306.87	0/0:309:309,0:309:11026:0:0:0,-93.0183,-991.989	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/1:313:195,118:195:6983:118:4168:-281.044,0,-534.308	0/1:139:66,72:66:2372:72:2537:-186.67,0,-171.835	0/0:196:196,0:196:6980:0:0:0,-59.0019,-628.267	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:217:117,100:117:4200:100:3579:-256.993,0,-312.856	0/0:204:204,0:204:7269:0:0:0,-61.4101,-654.208	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.895	0/1:4:1,3:1:36:3:93:-7.47261,0,-2.39415	0/0:170:170,0:170:6088:0:0:0,-51.1751,-548.021	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:137:80,57:80:2859:57:2036:-142.269,0,-216.298	0/1:78:45,33:45:1603:33:1180:-83.0277,0,-121.079	0/1:66:33,33:33:1180:33:1169:-85.6473,0,-86.6401	0/1:87:39,48:39:1404:48:1672:-124.574,0,-100.47	0/1:98:52,46:52:1854:46:1611:-115.777,0,-137.637	0/0:156:156,0:156:5587:0:0:0,-46.9607,-502.949	0/0:139:137,1:137:4888:1:36:0,-38.2288,-436.547	0/1:142:88,54:88:3156:54:1936:-131.77,0,-241.517	0/1:144:88,56:88:3135:56:1979:-135.011,0,-239.028	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:267:267,0:267:9571:0:0:0,-80.375,-861.343	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.473	0/1:25:17,8:17:600:8:288:-18.7417,0,-46.8034	0/1:154:109,45:109:3902:45:1581:-96.2196,0,-305.014	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:97:64,33:64:2262:33:1176:-76.9479,0,-174.642	0/0:119:119,0:119:4262:0:0:0,-35.8226,-383.757	0/1:9:6,3:6:212:3:100:-6.62117,0,-16.7155	0/0:244:243,0:243:8689:0:0:0,-73.1503,-781.791	0/0:180:179,1:179:6404:1:32:0,-50.9861,-573.245	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:115:115,0:115:4103:0:0:0,-34.6184,-369.451	0/0:159:159,0:159:5649:0:0:0,-47.8638,-508.529	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/0:104:103,1:103:3675:1:36:0,-27.7088,-327.342	0/1:26:10,16:10:360:16:566:-43.4441,0,-24.9175	0/0:170:170,0:170:6071:0:0:0,-51.1751,-546.493	0/1:65:26,39:26:928:39:1383:-105.201,0,-64.2713	0/1:155:109,46:109:3869:46:1648:-101.949,0,-301.744	0/0:314:314,0:314:11284:0:0:0,-94.5234,-1015.43	0/0:112:112,0:112:4007:0:0:0,-33.7154,-360.819	0/0:119:119,0:119:4239:0:0:0,-35.8226,-381.683	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:162:162,0:162:5804:0:0:0,-48.7669,-522.473	0/0:129:129,0:129:4632:0:0:0,-38.8329,-417.041	0/0:279:279,0:279:9944:0:0:0,-83.9874,-894.895	0/0:127:126,0:126:4520:0:0:0,-37.9298,-406.782	0/0:82:82,0:82:2914:0:0:0,-24.6845,-261.866	0/1:87:47,40:47:1660:40:1411:-101.095,0,-123.495	0/0:165:165,0:165:5888:0:0:0,-49.6699,-530.03	0/1:43:26,17:26:936:17:612:-42.4691,0,-71.6152	0/0:82:82,0:82:2896:0:0:0,-24.6845,-260.873	0/0:96:96,0:96:3433:0:0:0,-28.8989,-309.168	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.235	0/1:141:87,54:87:3097:54:1927:-131.259,0,-236.371	0/1:66:23,43:23:828:43:1540:-119.025,0,-54.9761	0/0:188:187,1:187:6712:1:36:0,-52.9954,-600.53	0/0:111:111,0:111:3934:0:0:0,-33.4143,-354.252
chr06	2739832	.	AA	AG	18317.7	PASS	AB=0.484334;ABP=7.90887;AC=45;AF=0.241935;AN=186;AO=1127;CIGAR=1M1X;DP=6047;DPB=6047;DPRA=0.789879;EPP=2450.26;EPPR=10662.8;GTI=5;LEN=1;MEANALT=1.08;MQM=59.9361;MQMR=59.9741;NS=93;NUMALT=1;ODDS=0.434715;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40263;QR=175259;RO=4909;RPL=0;RPP=2450.26;RPPR=10662.8;RPR=1127;RUN=1;SAF=1127;SAP=2450.26;SAR=0;SRF=4909;SRP=10662.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:21,12:21:744:12:432:-29.2872,0,-57.35	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.132	0/1:113:66,47:66:2370:47:1679:-117.38,0,-179.542	0/0:138:138,0:138:4945:0:0:0,-41.5421,-445.199	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.735	0/1:88:50,38:50:1790:38:1353:-95.5778,0,-134.892	0/1:57:20,37:20:707:37:1331:-102.934,0,-46.7956	0/1:72:37,34:37:1318:34:1216:-88.0137,0,-97.1888	0/1:59:22,37:22:790:37:1324:-101.701,0,-53.6646	0/0:74:74,0:74:2646:0:0:0,-22.2762,-238.116	0/1:78:37,41:37:1330:41:1432:-105.658,0,-96.5221	0/1:86:50,36:50:1782:36:1296:-91.0554,0,-134.774	0/0:56:55,1:55:1965:1:36:0,-13.2594,-173.526	0/1:43:24,19:24:862:19:684:-48.946,0,-64.958	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.412	0/0:49:48,1:48:1682:1:36:0,-11.1522,-148.066	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.285	0/1:164:77,87:77:2770:87:3101:-229.948,0,-200.172	0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1292	0/1:28:8,20:8:288:20:716:-56.3389,0,-17.8386	0/1:19:13,6:13:466:6:216:-14.0709,0,-36.5591	0/1:29:15,14:15:532:14:503:-36.7474,0,-39.4827	0/0:195:195,0:195:6963:0:0:0,-58.7008,-626.736	0/0:176:175,0:175:6209:0:0:0,-52.6802,-558.549	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:145:60,85:60:2137:85:3048:-230.9,0,-148.948	0/1:67:30,37:30:1059:37:1324:-99.2931,0,-75.4506	0/0:45:44,1:44:1580:1:36:0,-9.94807,-138.893	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8024	0/1:160:85,75:85:3017:75:2690:-194.179,0,-223.594	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0522	0/0:67:66,0:66:2364:0:0:0,-19.868,-212.659	0/1:6:2,4:2:72:4:129:-10.1215,0,-5.03054	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:39:39,0:39:1402:0:0:0,-11.7402,-126.479	0/1:55:25,30:25:900:30:1076:-80.5962,0,-64.7644	0/1:57:32,25:32:1148:25:900:-64.1623,0,-86.4713	0/1:59:35,24:35:1260:24:860:-59.9611,0,-95.9447	0/1:50:29,21:29:1015:21:752:-52.9548,0,-76.6082	0/1:52:28,24:28:1008:24:860:-62.0601,0,-75.3828	0/0:132:132,0:132:4712:0:0:0,-39.736,-424.225	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.998	0/1:115:61,54:61:2162:54:1940:-140.253,0,-160.228	0/1:41:20,21:20:705:21:752:-55.664,0,-51.4316	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.888	0/0:25:25,0:25:898:0:0:0,-7.52575,-81.1408	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:86:42,44:42:1510:44:1550:-113.899,0,-110.306	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:6:4,2:4:133:2:72:-5.03054,0,-10.4914	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:47:27,20:27:966:20:717:-50.7096,0,-73.1088	0/0:89:87,1:87:3109:1:36:0,-23.2522,-276.438	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:119:119,0:119:4255:0:0:0,-35.8226,-383.129	0/0:124:124,0:124:4433:0:0:0,-37.3277,-399.139	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.273	0/0:52:52,0:52:1854:0:0:0,-15.6536,-167.139	0/0:100:99,1:99:3540:1:36:0,-26.5047,-315.21	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.444	0/0:62:61,0:61:2194:0:0:0,-18.3628,-197.366	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.719	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:94:94,0:94:3366:0:0:0,-28.2968,-303.156	0/1:67:41,25:41:1474:25:896:-60.7326,0,-112.728	0/1:81:47,30:47:1661:30:1049:-71.1803,0,-126.237	0/0:142:142,0:142:5039:0:0:0,-42.7463,-453.657	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.284	0/0:112:110,2:110:3929:2:72:0,-26.8786,-345.603	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/0:79:79,0:79:2834:0:0:0,-23.7814,-255.299	0/0:85:85,0:85:3032:0:0:0,-25.5875,-273.111	0/0:124:123,0:123:4389:0:0:0,-37.0267,-394.8	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/0:88:88,0:88:3138:0:0:0,-26.4906,-282.645	0/1:55:30,25:30:1055:25:900:-64.7644,0,-78.6916	0/0:140:139,1:139:4988:1:36:0,-38.5459,-445.468	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.256	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.727	0/0:61:61,0:61:2166:0:0:0,-18.3628,-195.205	0/1:122:70,52:70:2475:52:1864:-131.314,0,-186.22	0/1:78:28,50:28:1006:50:1777:-136.731,0,-67.3759	0/0:99:99,0:99:3511:0:0:0,-29.802,-316.201	0/0:118:118,0:118:4234:0:0:0,-35.5215,-381.239
chr06	2757022	.	A	G	190201	PASS	AB=0.488157;ABP=7.48508;AC=145;AF=0.771277;AN=188;AO=8785;CIGAR=1X;DP=10677;DPB=10677;DPRA=0;EPP=19079.4;EPPR=4100.58;GTI=4;LEN=1;MEANALT=1.05319;MQM=59.8952;MQMR=59.9958;NS=94;NUMALT=1;ODDS=3.16443;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312813;QR=67433;RO=1887;RPL=0;RPP=19079.4;RPPR=4100.58;RPR=8785;RUN=1;SAF=8785;SAP=19079.4;SAR=0;SRF=1887;SRP=4100.58;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:5,13:5:180:13:464:-36.679,0,-11.1335	1/1:126:0,126:0:0:126:4485:-403.813,-37.9298,0	0/1:122:64,58:64:2277:58:2008:-144.175,0,-168.457	1/1:313:0,313:0:0:313:11119:-1000.49,-94.2224,0	0/1:38:27,11:27:972:11:396:-24.5436,0,-76.3588	0/1:41:19,22:19:669:22:773:-57.5473,0,-48.1917	1/1:152:1,151:1:36:151:5358:-478.709,-42.1583,0	0/1:167:74,92:74:2630:92:3282:-245.268,0,-186.614	0/1:96:60,36:60:2145:36:1273:-85.972,0,-164.417	0/1:88:44,44:44:1554:44:1557:-113.927,0,-113.657	0/1:50:24,26:24:864:26:932:-69.1474,0,-63.0311	1/1:80:0,80:0:0:80:2851:-256.807,-24.0824,0	0/1:59:34,25:34:1209:25:885:-62.2058,0,-91.3534	0/1:74:35,39:35:1245:39:1400:-104.023,0,-90.0765	1/1:74:0,74:0:0:74:2625:-236.481,-22.2762,0	0/1:45:27,18:27:972:18:648:-45.1055,0,-74.2516	1/1:71:0,71:0:0:71:2539:-228.759,-21.3731,0	1/1:64:0,64:0:0:64:2274:-204.919,-19.2659,0	1/1:35:0,35:0:0:35:1260:-113.704,-10.5361,0	1/1:203:0,203:0:0:203:7274:-654.675,-61.1091,0	0/1:184:102,82:102:3627:82:2914:-207.103,0,-271.242	1/1:95:0,95:0:0:95:3373:-303.783,-28.5979,0	0/1:90:48,42:48:1720:42:1508:-108.922,0,-127.993	0/1:154:73,81:73:2628:81:2844:-209.831,0,-190.408	0/1:73:47,26:47:1677:26:902:-59.5152,0,-129.24	1/1:499:0,499:0:0:499:17755:-1597.06,-150.214,0	1/1:221:0,221:0:0:221:7891:-710.211,-66.5276,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:229:131,98:131:4697:98:3512:-247.329,0,-353.952	0/1:124:59,65:59:2105:65:2321:-171.821,0,-152.39	1/1:104:0,104:0:0:104:3710:-334.099,-31.3071,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:234:110,124:110:3945:124:4418:-327.34,0,-284.798	1/1:215:0,215:0:0:215:7572:-681.516,-64.7215,0	1/1:62:0,62:0:0:62:2205:-198.714,-18.6639,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:212:0,211:0:0:211:7492:-673.772,-63.5173,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:158:75,83:75:2617:83:2953:-218.44,0,-188.209	0/1:92:31,61:31:1116:61:2166:-167.508,0,-73.0569	0/1:86:46,40:46:1652:40:1402:-100.585,0,-123.08	0/1:102:50,52:50:1796:52:1855:-136.522,0,-131.217	0/1:162:86,76:86:3081:76:2702:-194.656,0,-228.749	1/1:262:0,262:0:0:262:9287:-835.797,-78.8699,0	1/1:126:0,126:0:0:126:4502:-405.341,-37.9298,0	0/1:227:111,116:111:3981:116:4164:-306.608,0,-290.144	0/1:197:104,93:104:3725:93:3325:-240.163,0,-276.146	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:152:0,152:0:0:152:5409:-486.939,-45.7566,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:21:13,8:13:468:8:284:-19.5817,0,-36.138	0/1:213:113,100:113:4049:100:3580:-258.286,0,-300.476	1/1:72:0,72:0:0:72:2528:-227.758,-21.6742,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:18:8,10:8:288:10:345:-25.9445,0,-20.8489	0/1:28:16,12:16:542:12:428:-30.43,0,-40.6689	1/1:126:0,126:0:0:126:4480:-403.317,-37.9298,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:409:0,408:0:0:408:14540:-1307.66,-122.82,0	1/1:305:1,304:1:36:304:10768:-964.937,-88.2159,0	1/1:70:0,70:0:0:70:2463:-221.921,-21.0721,0	1/1:158:0,158:0:0:158:5596:-503.756,-47.5627,0	1/1:261:2,257:2:72:257:9129:-814.74,-71.4899,0	1/1:73:0,73:0:0:73:2624:-236.406,-21.9752,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:93:0,93:0:0:93:3311:-297.91,-27.9958,0	1/1:101:0,101:0:0:101:3609:-325.015,-30.404,0	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	1/1:79:0,79:0:0:79:2810:-253.137,-23.7814,0	0/1:64:23,41:23:828:41:1464:-112.745,0,-55.5782	0/1:68:24,44:24:860:44:1578:-121.841,0,-57.2518	1/1:271:0,271:0:0:271:9707:-873.569,-81.5791,0	1/1:28:0,28:0:0:28:1001:-90.4056,-8.42884,0	1/1:161:3,158:3:108:158:5668:-500.149,-38.3907,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:204:0,204:0:0:204:7290:-656.148,-61.4101,0	1/1:133:0,133:0:0:133:4735:-426.306,-40.037,0	1/1:333:0,333:0:0:333:11900:-1070.04,-100.243,0	1/1:116:0,116:0:0:116:4161:-374.443,-34.9195,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	0/1:114:56,58:56:2016:58:2088:-153.872,0,-147.395	1/1:175:0,175:0:0:175:6215:-559.379,-52.6803,0	0/1:33:18,15:18:633:15:540:-39.0025,0,-47.3611	1/1:96:0,96:0:0:96:3392:-305.481,-28.8989,0	1/1:82:0,82:0:0:82:2929:-263.843,-24.6845,0	1/1:30:1,29:1:36:29:1040:-90.3054,-5.43263,0	0/1:60:38,22:38:1353:22:773:-51.8277,0,-104.007	0/1:81:51,30:51:1836:30:1065:-71.7763,0,-141.137	1/1:210:0,210:0:0:210:7497:-674.72,-63.2163,0	1/1:140:0,140:0:0:140:5002:-450.322,-42.1442,0
chr06	2760513	.	C	T	30324.7	PASS	AB=0.480356;ABP=15.8071;AC=44;AF=0.234043;AN=188;AO=1849;CIGAR=1X;DP=9429;DPB=9429;DPRA=1.03682;EPP=3992.05;EPPR=16332.7;GTI=3;LEN=1;MEANALT=1.03774;MQM=59.9162;MQMR=59.9686;NS=94;NUMALT=1;ODDS=0.448781;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65988;QR=269334;RO=7576;RPL=1846;RPP=3992.05;RPPR=16315.4;RPR=3;RUN=1;SAF=1849;SAP=4018.06;SAR=0;SRF=7574;SRP=16436.7;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:27,26:27:940:26:928:-67.5117,0,-68.9562	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.92	0/1:164:84,80:84:3004:80:2846:-207.004,0,-221.223	0/0:233:233,0:233:8310:0:0:0,-70.14,-747.911	0/1:60:29,31:29:1028:31:1099:-81.1564,0,-74.7712	0/1:48:21,27:21:756:27:945:-70.9128,0,-53.9178	0/0:130:130,0:130:4597:0:0:0,-39.1339,-413.896	0/1:139:87,52:87:3066:52:1856:-125.476,0,-234.325	0/1:130:76,54:76:2694:54:1931:-134.933,0,-203.571	0/1:135:66,69:66:2376:69:2480:-182.814,0,-173.458	0/1:54:26,28:26:914:28:995:-73.6084,0,-66.319	0/0:95:95,0:95:3349:0:0:0,-28.5978,-301.627	0/1:80:43,37:43:1523:37:1325:-95.4698,0,-113.28	0/1:52:19,33:19:656:33:1180:-90.8545,0,-43.7012	0/0:62:62,0:62:2189:0:0:0,-18.6639,-195.911	0/1:59:36,23:36:1273:23:819:-56.2708,0,-97.0031	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:34:34,0:34:1202:0:0:0,-10.235,-108.484	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/0:190:188,2:188:6705:2:72:0,-50.359,-596.691	0/1:250:130,118:130:4580:118:4217:-304.731,0,-337.388	0/0:139:139,0:139:4963:0:0:0,-41.8432,-446.817	0/1:135:52,83:52:1860:83:2976:-227.433,0,-127.041	0/1:68:29,39:29:1015:39:1400:-105.829,0,-71.1908	0/1:134:82,52:82:2940:52:1857:-126.81,0,-224.496	0/0:258:257,1:257:9179:1:36:0,-74.0675,-822.483	0/0:313:312,1:312:11160:1:36:0,-90.6241,-1000.69	0/0:41:41,0:41:1438:0:0:0,-12.3422,-129.714	0/1:241:139,102:139:4954:102:3641:-255.343,0,-373.462	0/1:154:78,76:78:2757:76:2716:-198.323,0,-202.013	0/0:97:97,0:97:3450:0:0:0,-29.1999,-309.936	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:172:90,82:90:3187:82:2939:-212.965,0,-235.276	0/0:183:183,0:183:6530:0:0:0,-55.0885,-587.782	0/0:68:68,0:68:2415:0:0:0,-20.47,-217.606	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:96:96,0:96:3406:0:0:0,-28.8989,-306.756	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:146:66,80:66:2343:80:2849:-212.697,0,-167.178	0/1:55:31,24:31:1116:24:860:-61.1652,0,-84.195	0/1:37:21,16:21:703:16:541:-37.7407,0,-52.4428	0/1:176:84,92:84:2985:92:3293:-243.595,0,-215.9	0/1:163:93,70:93:3295:70:2508:-176.904,0,-247.693	0/0:258:258,0:258:9146:0:0:0,-77.6657,-823.117	0/0:155:155,0:155:5473:0:0:0,-46.6596,-492.7	0/1:136:79,57:79:2825:57:2025:-141.576,0,-213.547	0/1:40:15,25:15:536:25:900:-69.2798,0,-36.5336	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/0:138:138,0:138:4930:0:0:0,-41.5421,-443.85	0/0:87:87,0:87:3106:0:0:0,-26.1896,-279.766	0/1:19:5,14:5:180:14:496:-39.2547,0,-10.8325	0/1:122:64,58:64:2274:58:2059:-148.855,0,-168.196	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.666	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:94:57,37:57:1985:37:1309:-89.8094,0,-150.621	0/0:95:94,1:94:3362:1:36:0,-24.9996,-299.197	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:151:151,0:151:5372:0:0:0,-45.4555,-483.612	0/0:147:143,4:143:5101:4:140:0,-31.3068,-446.289	0/0:78:78,0:78:2756:0:0:0,-23.4803,-248.277	0/0:84:83,0:83:2948:0:0:0,-24.9855,-265.193	0/0:131:131,0:131:4657:0:0:0,-39.4349,-419.293	0/0:146:143,3:143:5112:3:108:0,-33.8752,-450.149	0/0:50:50,0:50:1766:0:0:0,-15.0515,-159.222	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:32:21,11:21:752:11:396:-26.3498,0,-58.3733	0/0:184:184,0:184:6501:0:0:0,-55.3895,-585.177	0/1:167:83,84:83:2968:84:3021:-221.848,0,-217.081	0/1:155:91,64:91:3215:64:2274:-158.262,0,-242.913	0/0:200:200,0:200:7138:0:0:0,-60.206,-642.479	0/0:181:181,0:181:6426:0:0:0,-54.4864,-578.428	0/0:86:84,1:84:2991:1:36:0,-22.3491,-265.816	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.999	0/0:98:97,1:97:3449:1:36:0,-25.9027,-307.024	0/0:249:248,1:248:8846:1:36:0,-71.3582,-792.529	0/0:61:61,0:61:2161:0:0:0,-18.3628,-194.756	0/0:61:61,0:61:2131:0:0:0,-18.3628,-192.053	0/1:54:23,31:23:812:31:1104:-83.415,0,-57.1453	0/0:130:130,0:130:4626:0:0:0,-39.1339,-416.502	0/1:32:14,18:14:504:18:640:-48.2964,0,-36.0569	0/0:81:81,0:81:2872:0:0:0,-24.3834,-258.716	0/0:75:75,0:75:2669:0:0:0,-22.5772,-240.454	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:101:55,46:55:1926:46:1624:-116.042,0,-143.209	0/1:79:30,49:30:1072:49:1751:-134.092,0,-73.0111	0/0:115:115,0:115:4084:0:0:0,-34.6184,-367.747	0/0:97:97,0:97:3419:0:0:0,-29.1999,-307.922
chr06	2760601	.	T	C	29112.8	PASS	AB=0.514406;ABP=9.01639;AC=46;AF=0.244681;AN=188;AO=1731;CIGAR=1X;DP=7911;DPB=7911;DPRA=0.952901;EPP=3761.83;EPPR=13396.7;GTI=4;LEN=1;MEANALT=1;MQM=59.9763;MQMR=59.9846;NS=94;NUMALT=1;ODDS=0.810556;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61880;QR=221522;RO=6180;RPL=1731;RPP=3761.83;RPPR=13396.7;RPR=0;RUN=1;SAF=0;SAP=3761.83;SAR=1731;SRF=0;SRP=13422.7;SRR=6180;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	0/0:156:156,0:156:5539:0:0:0,-46.9607,-498.477	0/1:85:42,43:42:1504:43:1544:-113.666,0,-110.067	0/0:179:179,0:179:6409:0:0:0,-53.8844,-576.896	0/1:84:34,50:34:1220:50:1783:-135.465,0,-84.8203	0/1:79:45,34:45:1620:34:1205:-84.9725,0,-122.309	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:144:55,89:55:1972:89:3189:-243.883,0,-134.407	0/1:80:36,44:36:1281:44:1576:-118.035,0,-91.5089	0/1:144:56,88:56:2008:88:3160:-241.276,0,-137.645	0/1:42:19,23:19:684:23:820:-61.4793,0,-49.2455	0/0:54:53,1:53:1908:1:36:0,-12.6573,-168.399	0/1:67:28,39:28:1004:39:1396:-105.77,0,-70.5069	0/1:66:32,34:32:1148:34:1216:-89.8786,0,-83.7619	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:56:26,30:26:936:30:1080:-80.6556,0,-67.7018	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/1:108:51,57:51:1836:57:2037:-151.089,0,-133.009	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:97:53,44:53:1889:44:1580:-113.292,0,-141.086	0/1:107:51,56:51:1836:56:2008:-148.783,0,-133.31	0/1:31:21,10:21:737:10:356:-23.0493,0,-57.3168	0/0:426:426,0:426:15308:0:0:0,-128.239,-1377.32	0/0:115:115,0:115:4136:0:0:0,-34.6184,-371.403	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:126:57,69:57:2040:69:2465:-184.173,0,-145.942	0/1:257:121,136:121:4344:136:4851:-359.379,0,-313.769	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.728	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:240:123,117:123:4420:117:4190:-305.026,0,-325.723	0/0:234:234,0:234:8385:0:0:0,-70.441,-754.652	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:101:47,54:47:1684:54:1940:-144.472,0,-121.443	0/1:107:51,56:51:1828:56:2003:-148.333,0,-132.591	0/1:83:41,42:41:1453:42:1491:-109.498,0,-106.078	0/1:107:73,34:73:2620:34:1224:-78.2568,0,-203.837	0/1:47:27,20:27:968:20:712:-50.2582,0,-73.289	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/0:100:100,0:100:3587:0:0:0,-30.103,-323.036	0/1:147:67,80:67:2397:80:2853:-212.751,0,-171.734	0/1:167:81,86:81:2916:86:3042:-223.737,0,-212.402	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:99:98,1:98:3512:1:36:0,-26.2037,-312.692	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	0/1:62:22,40:22:777:40:1432:-110.514,0,-51.5865	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:51:24,27:24:856:27:968:-72.0848,0,-62.0086	0/0:111:110,1:110:3960:1:36:0,-29.8161,-352.991	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:196:196,0:196:7029:0:0:0,-59.0019,-632.668	0/0:212:212,0:212:7586:0:0:0,-63.8184,-682.775	0/0:63:63,0:63:2253:0:0:0,-18.9649,-203.031	0/0:52:51,1:51:1824:1:36:0,-12.0553,-160.843	0/0:195:192,3:192:6884:3:108:0,-48.6257,-609.552	0/0:85:82,3:82:2921:3:108:0,-15.5124,-253.049	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/1:26:6,20:6:208:20:708:-56.2188,0,-11.2323	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/1:44:29,15:29:1036:15:528:-34.606,0,-80.3004	0/1:202:111,91:111:3984:91:3252:-232.093,0,-297.941	0/0:145:144,1:144:5164:1:36:0,-40.0511,-461.301	0/0:105:104,1:104:3732:1:36:0,-28.0099,-332.482	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:110:108,2:108:3880:2:72:0,-26.2766,-342.557	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:111:55,56:55:1976:56:2005:-147.308,0,-144.7	0/0:161:160,1:160:5732:1:36:0,-44.8676,-512.398	0/1:41:32,9:32:1152:9:324:-17.1636,0,-91.6479	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:69:32,37:32:1140:37:1328:-99.0512,0,-82.1381	0/1:70:25,45:25:900:45:1598:-123.038,0,-60.2489	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244
chr06	2765516	.	G	A	254639	PASS	AB=0.532845;ABP=38.8137;AC=155;AF=0.824468;AN=188;AO=11552;CIGAR=1X;DP=13408;DPB=13408;DPRA=0;EPP=24819.3;EPPR=3970.46;GTI=1;LEN=1;MEANALT=1.03191;MQM=56.2934;MQMR=59.718;NS=94;NUMALT=1;ODDS=15.8512;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=412908;QR=66202;RO=1851;RPL=11520;RPP=24810.7;RPPR=3970.46;RPR=32;RUN=1;SAF=1;SAP=25079.2;SAR=11551;SRF=0;SRP=4022.41;SRR=1851;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:40,34:40:1423:34:1208:-86.6381,0,-106.019	1/1:98:0,98:0:0:98:3509:-315.715,-29.5009,0	0/1:90:31,59:31:1116:59:2115:-163.059,0,-73.6581	1/1:155:0,155:0:0:155:5572:-500.274,-46.6597,0	0/1:46:23,23:23:824:23:820:-60.2384,0,-60.6359	0/1:45:26,19:26:932:19:680:-47.897,0,-70.6516	1/1:67:0,67:0:0:67:2369:-212.821,-20.169,0	0/1:148:85,63:85:3040:63:2256:-158.549,0,-229.275	0/1:138:77,61:77:2768:61:2136:-150.822,0,-207.808	0/1:72:35,36:35:1251:36:1280:-93.4413,0,-90.6544	1/1:190:15,175:15:531:175:6266:-515.304,-9.16045,0	1/1:78:0,78:0:0:78:2783:-250.469,-23.4803,0	0/1:82:40,42:40:1436:42:1508:-111.179,0,-104.85	0/1:49:24,25:24:860:25:900:-66.4624,0,-62.9698	1/1:61:0,61:0:0:61:2188:-196.742,-18.3628,0	0/1:84:39,45:39:1396:45:1605:-119.203,0,-100.649	1/1:30:0,30:0:0:30:1080:-97.2115,-9.0309,0	1/1:29:0,29:0:0:29:1040:-93.4326,-8.72987,0	1/1:185:0,185:0:0:185:6624:-595.452,-55.6906,0	1/1:165:1,164:1:36:164:5842:-521.708,-46.0717,0	0/1:194:91,103:91:3272:103:3676:-272.088,0,-236.295	1/1:93:1,92:1:36:92:3270:-290.721,-24.3975,0	0/1:61:25,36:25:900:36:1292:-97.9217,0,-62.9582	0/1:54:19,35:19:671:35:1252:-96.6091,0,-44.4571	0/1:82:32,50:32:1148:50:1756:-133.346,0,-78.9423	1/1:204:0,204:0:0:204:7289:-654.746,-61.4101,0	1/1:210:0,209:0:0:209:7453:-668.315,-62.9153,0	1/1:43:1,42:1:36:42:1495:-130.977,-9.34602,0	0/1:164:76,88:76:2724:88:3123:-231.731,0,-195.974	0/1:95:45,50:45:1599:50:1788:-132.449,0,-115.6	1/1:57:2,55:2:72:55:1968:-169.945,-10.322,0	1/1:318:4,314:4:140:314:11251:-997.758,-82.783,0	1/1:472:1,471:1:36:471:16861:-1510.52,-138.488,0	1/1:223:1,222:1:36:222:7922:-707.726,-63.5314,0	1/1:399:2,397:2:72:397:14181:-1266.93,-113.274,0	1/1:522:0,522:0:0:522:18660:-1675.29,-157.138,0	0/1:196:104,92:104:3716:92:3281:-236.1,0,-275.636	1/1:74:0,74:0:0:74:2652:-238.531,-22.2762,0	1/1:399:0,399:0:0:399:14232:-1278.25,-120.111,0	1/1:125:0,125:0:0:125:4479:-402.852,-37.6288,0	1/1:110:0,110:0:0:110:3948:-355.15,-33.1133,0	1/1:198:0,198:0:0:198:7086:-636.491,-59.6039,0	0/1:82:28,54:28:996:54:1897:-146.112,0,-65.1975	0/1:62:39,23:39:1388:23:828:-55.6994,0,-106.555	0/1:72:46,26:46:1656:26:923:-61.5665,0,-127.653	0/1:34:19,15:19:680:15:540:-38.6878,0,-51.2932	0/1:78:34,44:34:1220:44:1580:-118.901,0,-86.6265	1/1:127:4,123:4:144:123:4411:-383.156,-24.9196,0	1/1:76:0,76:0:0:76:2728:-245.355,-22.8783,0	0/1:106:50,56:50:1792:56:1969:-145.372,0,-129.644	0/1:93:56,37:56:1991:37:1328:-91.7943,0,-151.466	1/1:320:5,315:5:180:315:11275:-994.615,-79.7779,0	1/1:103:0,103:0:0:103:3687:-331.733,-31.0061,0	1/1:60:0,60:0:0:60:2148:-193.477,-18.0618,0	1/1:163:7,156:7:252:156:5581:-479.094,-26.0389,0	0/1:133:67,66:67:2392:66:2347:-171.156,0,-175.427	1/1:18:0,18:0:0:18:648:-58.442,-5.41854,0	1/1:390:2,388:2:72:388:13889:-1241.29,-110.565,0	1/1:224:2,222:2:72:222:7905:-703.491,-60.594,0	0/1:60:45,15:45:1611:15:540:-29.4424,0,-127.211	1/1:63:1,62:1:36:62:2212:-195.41,-15.3666,0	1/1:214:2,212:2:72:212:7580:-674.359,-57.5837,0	1/1:87:0,87:0:0:87:3124:-280.639,-26.1896,0	1/1:198:3,195:3:108:195:6970:-616.092,-49.5288,0	1/1:37:0,37:0:0:37:1320:-118.91,-11.1381,0	1/1:68:0,68:0:0:68:2448:-219.526,-20.47,0	1/1:107:1,106:1:36:106:3804:-338.373,-28.6119,0	1/1:113:0,113:0:0:113:4056:-364.44,-34.0164,0	1/1:496:1,495:1:36:495:17703:-1584.59,-145.713,0	1/1:45:0,45:0:0:45:1612:-144.82,-13.5464,0	1/1:49:0,49:0:0:49:1756:-158.01,-14.7505,0	0/1:572:328,244:328:11697:244:8727:-611.76,0,-879.497	1/1:75:2,73:2:72:73:2595:-226.587,-15.7405,0	0/1:93:49,41:49:1764:41:1476:-105.3,0,-131.59	0/1:112:51,61:51:1824:61:2180:-162.662,0,-130.723	1/1:138:1,137:1:32:137:4907:-438.054,-38.3428,0	1/1:92:0,92:0:0:92:3300:-296.898,-27.6948,0	1/1:65:0,65:0:0:65:2336:-209.906,-19.567,0	1/1:421:9,412:9:324:412:14712:-1292.54,-97.2287,0	1/1:134:0,134:0:0:134:4784:-430.165,-40.338,0	1/1:115:0,115:0:0:115:4109:-369.496,-34.6185,0	1/1:186:0,186:0:0:186:6619:-594.142,-55.9916,0	1/1:38:0,38:0:0:38:1356:-121.923,-11.4391,0	1/1:66:0,66:0:0:66:2372:-213.476,-19.868,0	0/1:56:25,31:25:896:31:1116:-83.1598,0,-63.9107	1/1:158:2,156:2:72:156:5585:-494.488,-40.7733,0	0/1:20:9,11:9:324:11:396:-29.3207,0,-23.4853	1/1:64:0,64:0:0:64:2270:-204.053,-19.2659,0	1/1:65:0,65:0:0:65:2327:-209.534,-19.567,0	1/1:410:0,410:0:0:410:14658:-1315.3,-123.422,0	0/1:473:53,420:53:1880:420:14999:-1204.58,0,-27.0873	0/1:101:70,31:70:2512:31:1112:-69.8309,0,-195.731	1/1:6:0,6:0:0:6:212:-19.4106,-1.80618,0	1/1:91:0,91:0:0:91:3255:-292.713,-27.3937,0
chr06	2774948	.	G	A	30622.6	PASS	AB=0.614234;ABP=313.575;AC=48;AF=0.255319;AN=188;AO=1712;CIGAR=1X;DP=5933;DPB=5933;DPRA=1.04441;EPP=3720.57;EPPR=9090.72;GTI=2;LEN=1;MEANALT=1.08333;MQM=59.9901;MQMR=59.9929;NS=94;NUMALT=1;ODDS=0.497219;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61325;QR=150262;RO=4213;RPL=0;RPP=3720.57;RPPR=9090.72;RPR=1712;RUN=1;SAF=1712;SAP=3720.57;SAR=0;SRF=4213;SRP=9151.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:8,27:8:288:27:972:-77.2619,0,-15.7314	0/0:84:84,0:84:2993:0:0:0,-25.2865,-269.601	0/1:98:42,56:42:1504:56:2000:-150.773,0,-106.154	0/0:104:104,0:104:3707:0:0:0,-31.3071,-333.833	0/1:51:22,29:22:780:29:1036:-78.2014,0,-55.1705	0/1:23:10,13:10:360:13:453:-34.1759,0,-25.8206	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:132:37,95:37:1319:95:3404:-266.838,0,-79.2752	0/1:92:18,74:18:648:74:2637:-209.881,0,-30.9571	0/1:93:24,69:24:856:69:2472:-194.738,0,-49.3653	0/1:45:25,20:25:896:20:712:-50.8603,0,-67.414	0/0:58:58,0:58:2066:0:0:0,-17.4597,-186.21	0/1:61:32,29:32:1132:29:1040:-75.5515,0,-83.8258	0/1:69:32,37:32:1148:37:1332:-99.4113,0,-82.8588	0/0:48:48,0:48:1694:0:0:0,-14.4494,-152.745	0/1:40:16,24:16:576:24:856:-65.3199,0,-40.1338	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:81:80,0:80:2827:0:0:0,-24.0824,-254.348	0/1:140:53,87:53:1896:87:3124:-239.242,0,-128.774	0/0:59:59,0:59:2102:0:0:0,-17.7608,-189.448	0/1:48:19,29:19:684:29:1036:-79.1045,0,-47.4409	0/1:85:34,51:34:1216:51:1817:-138.222,0,-84.159	0/1:54:21,33:21:752:33:1188:-90.973,0,-51.7506	0/0:153:153,0:153:5475:0:0:0,-46.0576,-492.877	0/0:115:113,2:113:4031:2:72:0,-27.7817,-356.142	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:177:90,87:90:3216:87:3106:-226.485,0,-236.381	0/1:160:40,120:40:1428:120:4296:-338.651,0,-80.6527	0/0:66:64,1:64:2275:1:36:0,-16.3285,-201.414	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:194:95,99:95:3375:99:3552:-261.432,0,-245.568	0/0:137:137,0:137:4874:0:0:0,-41.2411,-438.815	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:142:49,93:49:1752:93:3344:-258.43,0,-115.218	0/1:60:21,39:21:748:39:1400:-108.237,0,-49.5835	0/1:58:33,25:33:1184:25:900:-63.8613,0,-89.4086	0/1:76:23,53:23:824:53:1908:-149.119,0,-51.605	0/1:65:29,36:29:1040:36:1292:-97.0168,0,-74.3474	0/0:101:100,0:100:3574:0:0:0,-30.103,-321.507	0/0:71:70,0:70:2491:0:0:0,-21.0721,-224.083	0/1:133:48,85:48:1724:85:3050:-234.692,0,-115.408	0/1:93:25,68:25:888:68:2438:-191.679,0,-52.2432	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:61:61,0:61:2157:0:0:0,-18.3628,-194.396	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:67:31,36:31:1103:36:1292:-96.4148,0,-79.4108	0/0:36:35,1:35:1252:1:36:0,-7.2388,-109.387	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:26:9,17:9:324:17:604:-46.8638,0,-21.6791	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.765	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.273	0/0:87:82,4:82:2919:4:136:0,-13.6695,-250.223	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.249	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/0:61:61,0:61:2144:0:0:0,-18.3628,-193.226	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:79:79,0:79:2816:0:0:0,-23.7814,-253.68	0/1:36:15,20:15:540:20:720:-54.2329,0,-38.0407	0/1:104:43,60:43:1540:60:2148:-162.221,0,-107.527	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	0/0:30:29,1:29:1032:1:36:0,-5.43262,-89.5952	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:111:110,0:110:3938:0:0:0,-33.1133,-354.251	0/0:89:89,0:89:3156:0:0:0,-26.7917,-284.264	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:92:46,46:46:1631:46:1652:-121.274,0,-119.383	0/0:125:125,0:125:4407:0:0:0,-37.6287,-396.806	0/1:31:16,15:16:576:15:536:-39.2429,0,-42.8431	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:67:67,0:67:2376:0:0:0,-20.169,-214.099	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:72:30,42:30:1080:42:1500:-113.62,0,-75.8391	0/1:51:6,45:6:216:45:1616:-130.377,0,-4.43798	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.682
chr06	2775044	.	T	C	93666.3	PASS	AB=0.452881;ABP=53.5556;AC=145;AF=0.77957;AN=186;AO=4479;CIGAR=1X;DP=5930;DPB=5930;DPRA=21.4746;EPP=9703;EPPR=3140.79;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.47;MQMR=59.7695;NS=93;NUMALT=1;ODDS=0.515603;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158465;QR=51956;RO=1449;RPL=3;RPP=9703;RPPR=3140.79;RPR=4476;RUN=1;SAF=0;SAP=9729.04;SAR=4479;SRF=0;SRP=3149.47;SRR=1449;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:38,17:38:1346:17:596:-37.4011,0,-104.882	1/1:33:0,33:0:0:33:1159:-104.613,-9.93399,0	0/1:88:42,46:42:1508:46:1635:-120.938,0,-109.51	1/1:83:1,82:1:36:82:2928:-260.12,-21.3872,0	0/1:36:19,17:19:684:17:593:-42.7286,0,-51.0486	0/1:28:16,12:16:576:12:432:-30.7841,0,-43.7438	1/1:42:1,41:1:36:41:1455:-127.647,-9.04499,0	0/1:68:43,25:43:1544:25:878:-58.8566,0,-117.065	0/1:85:46,39:46:1656:39:1396:-100.327,0,-123.741	0/1:51:35,16:35:1260:16:561:-35.4508,0,-98.3506	0/1:66:36,30:36:1296:30:1060:-75.8134,0,-97.0664	1/1:109:0,109:0:0:109:3804:-342.529,-32.8123,0	0/1:89:51,38:51:1820:38:1306:-91.0406,0,-137.29	0/1:78:37,41:37:1324:41:1427:-105.24,0,-95.968	1/1:76:0,76:0:0:76:2671:-240.599,-22.8783,0	0/1:63:27,35:27:968:35:1233:-92.244,0,-68.4133	1/1:31:0,31:0:0:31:1075:-97.0542,-9.33193,0	1/1:34:0,34:0:0:34:1199:-108.207,-10.235,0	1/1:32:0,32:0:0:32:1134:-102.314,-9.63296,0	1/1:94:0,94:0:0:94:3356:-302.138,-28.2968,0	0/1:114:60,54:60:2147:54:1927:-139.26,0,-158.24	1/1:64:0,64:0:0:64:2280:-205.373,-19.2659,0	0/1:61:40,21:40:1436:21:738:-48.363,0,-111.172	0/1:25:15,10:15:536:10:356:-24.8555,0,-41.0491	0/1:63:27,36:27:972:36:1288:-97.2537,0,-68.833	1/1:124:0,123:0:0:123:4365:-392.569,-37.0267,0	1/1:167:0,167:0:0:167:5951:-535.537,-50.272,0	1/1:33:0,33:0:0:33:1147:-103.528,-9.93399,0	0/1:131:82,49:82:2948:49:1747:-117.874,0,-226.118	0/1:74:48,26:48:1724:26:913:-60.2077,0,-133.168	1/1:68:1,67:1:36:67:2381:-211.038,-16.9893,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:17:0,17:0:0:17:608:-55.006,-5.11751,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:10:7,3:7:252:3:104:-6.68406,0,-19.5215	1/1:10:0,10:0:0:10:360:-32.6779,-3.0103,0	0/1:179:89,90:89:3200:90:3171:-231.678,0,-234.335	1/1:92:0,92:0:0:92:3263:-293.737,-27.6948,0	1/1:59:0,59:0:0:59:2088:-188.163,-17.7608,0	.:.:.:.:.:.:.:.	1/1:59:0,59:0:0:59:2112:-190.343,-17.7608,0	1/1:60:0,60:0:0:60:2139:-192.745,-18.0618,0	0/1:97:45,52:45:1612:52:1844:-137.015,0,-116.161	0/1:47:26,21:26:915:21:752:-53.8441,0,-68.5172	0/1:35:14,21:14:504:21:732:-55.6618,0,-35.162	0/1:121:65,56:65:2328:56:1999:-143.686,0,-173.347	0/1:37:25,12:25:900:12:428:-27.7207,0,-70.1829	1/1:67:0,67:0:0:67:2375:-213.987,-20.169,0	1/1:44:0,44:0:0:44:1557:-140.391,-13.2453,0	0/1:66:27,39:27:972:39:1385:-105.065,0,-67.9299	0/1:90:47,43:47:1680:43:1532:-111.059,0,-124.394	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	1/1:110:0,110:0:0:110:3935:-354.321,-33.1133,0	1/1:68:0,68:0:0:68:2419:-217.923,-20.47,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-13.5027	0/1:88:49,39:49:1760:39:1377:-97.7314,0,-132.193	1/1:15:1,14:1:36:14:489:-40.7406,-0.917175,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:63:34,29:34:1216:29:1031:-74.1325,0,-90.7817	1/1:119:1,118:1:36:118:4110:-366.397,-32.2243,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:65:0,65:0:0:65:2320:-209.018,-19.567,0	1/1:79:2,77:2:72:77:2721:-238.246,-16.9446,0	1/1:23:0,23:0:0:23:813:-73.4888,-6.92369,0	1/1:27:0,27:0:0:27:960:-86.6888,-8.12781,0	1/1:127:1,126:1:36:126:4485:-400.192,-34.6325,0	1/1:55:1,54:1:36:54:1927:-170.052,-12.9584,0	1/1:53:0,53:0:0:53:1864:-168.023,-15.9546,0	1/1:38:0,38:0:0:38:1347:-121.513,-11.4391,0	1/1:46:0,46:0:0:46:1643:-148.115,-13.8474,0	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	1/1:63:1,62:1:36:62:2199:-194.487,-15.3666,0	0/1:68:36,32:36:1292:32:1131:-81.6191,0,-96.044	0/1:153:92,61:92:3300:61:2137:-145.657,0,-251.132	1/1:62:0,62:0:0:62:2205:-198.625,-18.6639,0	1/1:90:1,89:1:36:89:3154:-280.437,-23.4944,0	1/1:39:1,38:1:36:38:1345:-117.742,-8.14234,0	0/1:14:10,4:10:356:4:144:-9.09083,0,-28.1215	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:61:0,61:0:0:61:2162:-194.812,-18.3628,0	1/1:136:1,135:1:36:135:4775:-426.205,-37.3444,0	1/1:34:0,34:0:0:34:1198:-108.004,-10.235,0	1/1:79:0,79:0:0:79:2766:-249.112,-23.7814,0	0/1:50:27,23:27:964:23:808:-57.8767,0,-72.023	1/1:121:0,121:0:0:121:4306:-387.563,-36.4246,0	0/1:45:10,35:10:360:35:1218:-96.2274,0,-19.1956	1/1:86:0,86:0:0:86:3028:-272.696,-25.8886,0	1/1:82:0,82:0:0:82:2878:-259.235,-24.6845,0	1/1:77:0,77:0:0:77:2670:-240.398,-23.1793,0	0/1:169:95,74:95:3408:74:2605:-183.822,0,-256.047	0/1:83:56,27:56:2008:27:955:-61.2633,0,-156.003	1/1:47:0,47:0:0:47:1650:-148.758,-14.1484,0	1/1:75:0,75:0:0:75:2642:-237.981,-22.5773,0
chr06	2775065	.	G	A	96519.4	PASS	AB=0.459583;ABP=40.3984;AC=145;AF=0.77957;AN=186;AO=4533;CIGAR=1X;DP=5972;DPB=5972;DPRA=21.6268;EPP=9785.59;EPPR=3108.24;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.4203;MQMR=59.8672;NS=93;NUMALT=1;ODDS=0.0990767;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161926;QR=51171;RO=1438;RPL=4526;RPP=9785.59;RPPR=3108.24;RPR=7;RUN=1;SAF=0;SAP=9846.29;SAR=4533;SRF=0;SRP=3125.59;SRR=1438;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:38,17:38:1364:17:604:-38.1258,0,-106.504	1/1:32:0,32:0:0:32:1125:-101.535,-9.63296,0	0/1:87:40,47:40:1428:47:1673:-124.655,0,-102.614	1/1:86:1,85:1:32:85:3052:-271.664,-22.6893,0	0/1:35:19,16:19:671:16:565:-40.598,0,-50.1751	0/1:29:16,13:16:576:13:449:-31.9991,0,-43.4428	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:65:42,23:42:1500:23:828:-55.2608,0,-115.728	0/1:86:46,40:46:1635:40:1424:-102.544,0,-121.549	0/1:52:35,17:35:1252:17:608:-39.3847,0,-97.3315	0/1:65:35,30:35:1232:30:1076:-77.5575,0,-91.6076	1/1:109:0,109:0:0:109:3883:-349.63,-32.8123,0	0/1:87:49,38:49:1732:38:1364:-96.8711,0,-129.975	0/1:80:37,43:37:1303:43:1540:-114.795,0,-93.4744	1/1:73:0,73:0:0:73:2624:-236.322,-21.9752,0	0/1:63:27,36:27:968:36:1270:-95.6189,0,-68.4721	1/1:31:0,31:0:0:31:1116:-100.751,-9.33193,0	1/1:33:0,33:0:0:33:1182:-106.683,-9.93399,0	1/1:32:0,32:0:0:32:1150:-103.767,-9.63296,0	1/1:96:0,96:0:0:96:3423:-308.158,-28.8989,0	0/1:117:62,55:62:2200:55:1972:-142.41,0,-162.103	1/1:65:0,65:0:0:65:2340:-210.761,-19.567,0	0/1:60:40,20:40:1432:20:701:-45.3224,0,-111.113	0/1:25:16,9:16:572:9:316:-21.2531,0,-44.2877	0/1:63:28,35:28:980:35:1239:-92.8442,0,-69.5451	1/1:124:0,124:0:0:124:4452:-400.727,-37.3277,0	1/1:173:0,173:0:0:173:6189:-556.941,-52.0782,0	1/1:31:0,31:0:0:31:1095:-98.8545,-9.33193,0	0/1:135:81,54:81:2896:54:1921:-132.264,0,-220.237	0/1:71:49,22:49:1752:22:784:-49.5108,0,-136.591	1/1:71:0,71:0:0:71:2498:-224.888,-21.3731,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:17:0,17:0:0:17:612:-55.3069,-5.11751,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:9:6,3:6:212:3:108:-7.35746,0,-16.7155	1/1:10:0,10:0:0:10:336:-30.5281,-3.0103,0	0/1:182:89,93:89:3179:93:3332:-245.26,0,-231.546	1/1:95:0,95:0:0:95:3408:-306.777,-28.5979,0	1/1:60:0,60:0:0:60:2156:-194.274,-18.0618,0	.:.:.:.:.:.:.:.	1/1:58:0,58:0:0:58:2080:-186.687,-17.4597,0	1/1:58:0,58:0:0:58:2075:-186.961,-17.4597,0	0/1:96:44,52:44:1576:52:1860:-138.762,0,-113.221	0/1:47:26,21:26:915:21:756:-54.205,0,-68.5172	0/1:37:14,23:14:504:23:790:-60.2646,0,-34.56	0/1:127:64,63:64:2284:63:2249:-164.331,0,-167.577	0/1:39:27,12:27:963:12:432:-27.481,0,-75.2458	1/1:67:1,66:1:36:66:2372:-210.11,-16.5707,0	1/1:44:0,44:0:0:44:1561:-140.738,-13.2453,0	0/1:64:26,38:26:928:38:1355:-102.97,0,-64.5723	0/1:90:44,46:44:1564:46:1647:-121.399,0,-113.959	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	1/1:113:0,113:0:0:113:4044:-364.127,-34.0164,0	1/1:64:0,64:0:0:64:2284:-205.789,-19.2659,0	0/1:8:5,3:5:180:3:104:-7.29457,0,-13.5027	0/1:88:49,39:49:1751:39:1361:-96.2702,0,-131.383	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/1:62:34,28:34:1208:28:1000:-71.6478,0,-90.3622	1/1:121:2,119:2:72:119:4274:-377.892,-29.5879,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:68:0,68:0:0:68:2436:-219.453,-20.47,0	1/1:78:2,76:2:72:76:2728:-238.842,-16.6436,0	1/1:23:0,23:0:0:23:824:-74.4751,-6.92369,0	1/1:27:0,27:0:0:27:960:-86.697,-8.12781,0	1/1:129:1,128:1:36:128:4571:-407.93,-35.2346,0	1/1:54:1,53:1:36:53:1896:-167.264,-12.6573,0	1/1:52:0,52:0:0:52:1856:-167.308,-15.6536,0	1/1:36:0,36:0:0:36:1292:-116.576,-10.8371,0	1/1:47:0,47:0:0:47:1671:-150.634,-14.1484,0	0/1:11:5,6:5:180:6:207:-15.6556,0,-13.2407	1/1:68:1,67:1:36:67:2377:-210.479,-16.8718,0	0/1:67:35,32:35:1238:32:1152:-83.8126,0,-91.4841	0/1:155:92,62:92:3273:62:2204:-151.101,0,-248.071	1/1:61:0,61:0:0:61:2188:-197.127,-18.3628,0	1/1:92:1,91:1:36:91:3260:-289.946,-24.0965,0	1/1:41:0,41:0:0:41:1455:-131.231,-12.3422,0	0/1:13:9,4:9:315:4:144:-9.39186,0,-24.7738	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:59:0,59:0:0:59:2100:-189.24,-17.7608,0	1/1:135:0,135:0:0:135:4831:-434.837,-40.6391,0	1/1:34:0,34:0:0:34:1214:-109.531,-10.235,0	1/1:78:0,78:0:0:78:2787:-251.001,-23.4803,0	0/1:50:27,23:27:964:23:820:-58.9509,0,-72.023	1/1:122:0,122:0:0:122:4380:-394.203,-36.7257,0	0/1:48:11,37:11:392:37:1320:-104.543,0,-21.1697	1/1:86:0,86:0:0:86:3074:-276.81,-25.8886,0	1/1:88:0,88:0:0:88:3140:-282.811,-26.4906,0	1/1:78:1,77:1:36:77:2764:-245.255,-19.8821,0	0/1:168:92,76:92:3262:76:2719:-194.38,0,-243.223	0/1:85:57,28:57:2002:28:1000:-64.7131,0,-154.861	1/1:52:0,52:0:0:52:1852:-166.916,-15.6536,0	1/1:74:0,74:0:0:74:2649:-238.539,-22.2762,0
chr06	2787045	.	A	C	80090	PASS	AB=0.533685;ABP=19.8338;AC=143;AF=0.768817;AN=186;AO=3723;CIGAR=1X;DP=4524;DPB=4524;DPRA=49.163;EPP=8087.4;EPPR=1738.02;GTI=4;LEN=1;MEANALT=1.02174;MQM=59.9885;MQMR=59.99;NS=93;NUMALT=1;ODDS=0.93976;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132661;QR=28638;RO=799;RPL=3723;RPP=8087.4;RPPR=1738.02;RPR=0;RUN=1;SAF=0;SAP=8087.4;SAR=3723;SRF=0;SRP=1738.02;SRR=799;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:15,13:15:536:13:464:-33.6687,0,-40.146	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	0/1:43:18,25:18:648:25:900:-68.3767,0,-45.7076	1/1:137:0,137:0:0:137:4893:-440.521,-41.2411,0	0/1:37:16,21:16:576:21:756:-57.2291,0,-41.0369	0/1:21:9,12:9:324:12:428:-32.5372,0,-23.1842	1/1:90:0,90:0:0:90:3171:-285.613,-27.0927,0	0/1:41:21,20:21:752:20:705:-51.4306,0,-55.6558	0/1:47:20,27:20:720:27:972:-73.6495,0,-50.9804	0/1:54:31,23:31:1112:23:813:-57.2335,0,-84.1357	0/1:25:8,17:8:288:17:612:-47.8877,0,-18.7417	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2127	0/1:42:23,19:23:828:19:684:-49.2471,0,-62.2009	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	0/1:33:17,16:17:612:16:576:-42.241,0,-45.4794	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:67:0,67:0:0:67:2389:-215.266,-20.169,0	0/1:57:19,38:19:684:38:1330:-102.837,0,-44.7316	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	0/1:44:17,27:17:612:27:972:-74.5526,0,-42.1681	0/1:69:37,32:37:1324:32:1152:-83.2191,0,-98.691	0/1:40:17,23:17:612:23:805:-60.7263,0,-43.3722	1/1:169:0,168:0:0:168:5874:-528.558,-50.573,0	1/1:122:0,122:0:0:122:4350:-391.673,-36.7257,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:112:46,66:46:1652:66:2338:-176.961,0,-115.253	0/1:68:32,36:32:1152:36:1280:-95.0332,0,-83.5201	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:113:59,53:59:2124:53:1893:-136.571,0,-157.353	1/1:83:0,83:0:0:83:2946:-265.372,-24.9855,0	1/1:26:1,25:1:36:25:900:-77.7227,-4.22851,0	.:.:.:.:.:.:.:.	1/1:99:0,99:0:0:99:3532:-318.088,-29.802,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:89:51,38:51:1832:38:1368:-96.6292,0,-138.369	0/1:22:10,12:10:360:12:427:-32.1454,0,-26.1216	0/1:34:14,20:14:480:20:701:-53.1767,0,-33.2888	0/1:69:42,27:42:1489:27:964:-66.3058,0,-113.531	0/1:39:14,25:14:504:25:888:-68.4985,0,-33.9579	1/1:106:0,106:0:0:106:3759:-338.506,-31.9092,0	1/1:62:0,62:0:0:62:2194:-197.722,-18.6639,0	0/1:31:12,19:12:428:19:684:-52.5584,0,-29.5269	0/1:120:44,76:44:1568:76:2706:-207.657,0,-105.288	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:82:0,82:0:0:82:2925:-263.484,-24.6845,0	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	0/1:47:26,21:26:936:21:733:-52.1413,0,-70.4111	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:49:18,31:18:633:31:1116:-86.0012,0,-42.5446	1/1:63:0,63:0:0:63:2259:-203.55,-18.9649,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:75:0,75:0:0:75:2673:-240.814,-22.5773,0	1/1:84:0,84:0:0:84:3003:-270.5,-25.2865,0	1/1:43:0,43:0:0:43:1529:-137.902,-12.9443,0	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	1/1:71:0,71:0:0:71:2518:-226.869,-21.3731,0	1/1:51:0,51:0:0:51:1821:-164.169,-15.3525,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:49:0,49:0:0:49:1741:-156.972,-14.7505,0	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:64:1,63:1:36:63:2252:-199.345,-15.6676,0	0/1:32:19,13:19:684:13:443:-30.5611,0,-52.2574	0/1:73:36,37:36:1292:37:1332:-98.2072,0,-94.6086	1/1:92:0,92:0:0:92:3293:-296.587,-27.6948,0	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	1/1:52:0,52:0:0:52:1841:-165.968,-15.6536,0	1/1:98:0,98:0:0:98:3498:-315.031,-29.5009,0	1/1:58:0,58:0:0:58:2050:-184.768,-17.4597,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:31:11,20:11:392:20:716:-55.4358,0,-26.2881	1/1:61:1,60:1:36:60:2118:-187.275,-14.7646,0	0/1:22:8,14:8:284:14:504:-39.0754,0,-19.2807	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:45:25,20:25:896:20:720:-51.5824,0,-67.414	0/1:34:18,16:18:648:16:572:-41.5784,0,-48.4169	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:43:0,43:0:0:43:1529:-137.901,-12.9443,0
chr06	2834126	.	C	T	27822.9	PASS	AB=0.444554;ABP=111.129;AC=45;AF=0.239362;AN=188;AO=1813;CIGAR=1X;DP=9474;DPB=9474;DPRA=0.992851;EPP=3939.89;EPPR=16634.3;GTI=4;LEN=1;MEANALT=1.01887;MQM=45.0541;MQMR=45.2254;NS=94;NUMALT=1;ODDS=1.74931;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64957;QR=273278;RO=7659;RPL=0;RPP=3939.89;RPPR=16634.3;RPR=1813;RUN=1;SAF=1813;SAP=3939.89;SAR=0;SRF=7659;SRP=16634.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:46,25:46:1636:25:888:-56.6822,0,-120.804	0/0:98:98,0:98:3488:0:0:0,-29.5009,-306.93	0/1:146:82,64:82:2915:64:2287:-157.036,0,-210.673	0/0:186:186,0:186:6632:0:0:0,-55.9916,-586.039	0/1:90:47,43:47:1684:43:1531:-106.279,0,-121.081	0/1:40:21,19:21:744:19:680:-45.8231,0,-53.7206	0/0:94:94,0:94:3364:0:0:0,-28.2968,-299.019	0/1:127:77,50:77:2751:50:1787:-119.063,0,-203.934	0/1:119:59,60:59:2099:60:2148:-151.258,0,-148.958	0/1:94:34,60:34:1199:60:2139:-161.07,0,-78.9841	0/1:117:62,55:62:2195:55:1972:-139.966,0,-159.687	0/0:144:144,0:144:5121:0:0:0,-43.3483,-449.712	0/1:116:57,59:57:2023:59:2115:-151.648,0,-143.313	0/1:85:46,39:46:1644:39:1391:-98.217,0,-119.082	0/0:74:74,0:74:2638:0:0:0,-22.2762,-233.905	0/1:79:30,49:30:1067:49:1756:-131.739,0,-71.2781	0/0:48:48,0:48:1716:0:0:0,-14.4494,-151.501	0/0:43:43,0:43:1535:0:0:0,-12.9443,-134.511	0/0:44:44,0:44:1567:0:0:0,-13.2453,-137.511	0/0:140:140,0:140:4989:0:0:0,-42.1442,-443.174	0/1:169:88,81:88:3152:81:2895:-204.475,0,-228.706	0/0:81:81,0:81:2912:0:0:0,-24.3834,-259.405	0/1:139:89,50:89:3183:50:1796:-117.882,0,-240.989	0/1:89:53,36:53:1883:36:1292:-86.6109,0,-140.252	0/1:136:106,30:106:3766:30:1063:-51.6559,0,-290.993	0/0:214:214,0:214:7632:0:0:0,-64.4204,-680.469	0/0:302:301,1:301:10709:1:36:0,-87.3625,-944.749	0/0:53:53,0:53:1900:0:0:0,-15.9546,-167.373	0/1:298:167,131:167:5980:131:4692:-327.011,0,-444.636	0/1:101:62,39:62:2220:39:1396:-93.7866,0,-166.932	0/0:116:115,1:115:4104:1:36:0,-31.6733,-360.985	0/1:7:5,2:5:176:2:72:-4.63497,0,-13.8758	0/0:34:34,0:34:1216:0:0:0,-10.235,-106.841	1/1:3:0,3:0:0:3:100:-9.19768,-0.90309,0	0/1:16:7,9:7:252:9:324:-24.0369,0,-17.718	0/0:29:29,0:29:1032:0:0:0,-8.72987,-89.491	0/1:209:116,93:116:4147:93:3340:-235.677,0,-307.588	0/0:129:129,0:129:4611:0:0:0,-38.8329,-404.643	0/0:85:84,1:84:3003:1:36:0,-22.4639,-258.816	0/1:4:3,1:3:108:1:36:-2.3444,0,-8.73172	0/0:100:100,0:100:3584:0:0:0,-30.103,-314.255	0/0:31:31,0:31:1104:0:0:0,-9.33193,-95.6388	0/1:124:81,43:81:2896:43:1548:-100.33,0,-218.851	0/1:76:35,41:35:1239:41:1463:-107.521,0,-85.6913	0/1:65:33,32:33:1166:32:1148:-83.1552,0,-84.6696	0/1:123:61,62:61:2180:62:2224:-160.531,0,-158.246	0/1:146:92,54:92:3292:54:1944:-125.855,0,-242.261	0/0:124:124,0:124:4448:0:0:0,-37.3277,-393.878	0/0:113:113,0:113:4008:0:0:0,-34.0164,-353.16	0/1:129:71,58:71:2511:58:2075:-145.009,0,-183.705	0/1:121:64,57:64:2281:57:2048:-146.796,0,-167.96	0/1:17:10,7:10:356:7:252:-17.6934,0,-26.9707	0/0:168:168,0:168:6027:0:0:0,-50.573,-525.614	0/0:65:65,0:65:2328:0:0:0,-19.5669,-207.594	0/1:11:2,9:2:72:9:320:-25.2216,0,-3.37859	0/1:167:99,68:99:3535:68:2440:-166.111,0,-262.01	0/0:53:53,0:53:1891:0:0:0,-15.9546,-166.95	0/1:17:7,10:7:244:10:360:-26.521,0,-17.0738	0/1:11:5,6:5:180:6:212:-16.0239,0,-13.151	0/1:138:77,61:77:2756:61:2192:-153.205,0,-201.474	0/0:126:126,0:126:4511:0:0:0,-37.9298,-399.816	0/1:19:12,7:12:432:7:252:-17.108,0,-33.1587	0/0:147:147,0:147:5227:0:0:0,-44.2514,-466.157	0/0:144:143,1:143:5111:1:36:0,-39.7815,-451.135	0/0:57:57,0:57:2032:0:0:0,-17.1587,-180.75	0/0:143:143,0:143:5111:0:0:0,-43.0473,-452.186	0/0:150:149,1:149:5308:1:36:0,-41.5877,-465.479	0/0:155:154,1:154:5507:1:36:0,-43.472,-485.428	0/0:86:86,0:86:3063:0:0:0,-25.8886,-272.127	0/0:101:100,1:100:3564:1:36:0,-26.883,-309.132	0/0:66:66,0:66:2359:0:0:0,-19.868,-210.96	0/1:24:12,12:12:428:12:432:-31.6535,0,-31.2572	0/0:124:124,0:124:4415:0:0:0,-37.3277,-387.431	0/1:100:48,52:48:1686:52:1868:-134.122,0,-117.146	0/1:186:123,63:123:4384:63:2268:-143.52,0,-331.018	0/0:151:151,0:151:5416:0:0:0,-45.4555,-481.978	0/0:122:122,0:122:4356:0:0:0,-36.7257,-381.633	0/0:62:61,1:61:2179:1:36:0,-15.1429,-188.597	0/1:17:10,7:10:360:7:252:-17.4169,0,-26.9237	0/0:37:37,0:37:1324:0:0:0,-11.1381,-117.248	0/0:103:103,0:103:3664:0:0:0,-31.0061,-320.908	0/0:211:211,0:211:7527:0:0:0,-63.5173,-668.985	0/0:64:64,0:64:2296:0:0:0,-19.2659,-202.677	0/0:72:72,0:72:2568:0:0:0,-21.6742,-227.218	0/1:55:30,25:30:1071:25:896:-62.6719,0,-78.3117	0/0:158:156,2:156:5578:2:72:0,-40.7858,-488.436	0/1:34:13,21:13:464:21:744:-54.5841,0,-31.0164	0/0:87:87,0:87:3081:0:0:0,-26.1896,-269.576	0/0:91:91,0:91:3243:0:0:0,-27.3937,-284.941	0/0:119:119,0:119:4233:0:0:0,-35.8226,-373.787	0/1:134:81,52:81:2886:52:1871:-124.25,0,-213.503	0/1:83:25,58:25:887:58:2088:-158.97,0,-54.1504	0/0:138:138,0:138:4940:0:0:0,-41.5421,-439.313	0/0:140:139,0:139:4976:0:0:0,-41.8432,-443.133
chr06	2834147	.	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chr06	2870488	.	C	T	64971	PASS	AB=0.537037;ABP=64.7766;AC=44;AF=0.234043;AN=188;AO=2805;CIGAR=1X;DP=11656;DPB=11656;DPRA=0.916071;EPP=6076.63;EPPR=19144.6;GTI=0;LEN=1;MEANALT=1.05357;MQM=59.7768;MQMR=59.9808;NS=94;NUMALT=1;ODDS=12.3598;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100206;QR=314606;RO=8847;RPL=1429;RPP=5.18487;RPPR=5.92646;RPR=1376;RUN=1;SAF=1431;SAP=5.52549;SAR=1374;SRF=4486;SRP=6.84541;SRR=4361;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:105:44,61:44:1572:61:2177:-164.578,0,-110.163	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/1:199:88,111:88:3138:111:3951:-295.867,0,-222.74	0/0:194:193,1:193:6913:1:36:0,-54.8015,-618.636	0/1:115:54,61:54:1909:61:2175:-161.398,0,-137.467	0/1:87:39,48:39:1379:48:1720:-128.706,0,-98.2184	0/0:112:111,1:111:3955:1:36:0,-30.1171,-352.544	0/1:199:82,117:82:2923:117:4176:-315.521,0,-203.388	0/1:160:64,96:64:2300:96:3437:-261.171,0,-159.096	0/1:107:41,66:41:1460:66:2331:-177.828,0,-99.4858	0/1:140:71,69:71:2525:69:2472:-180.58,0,-185.356	0/0:283:283,0:283:10058:0:0:0,-85.1915,-905.147	0/1:204:96,108:96:3408:108:3860:-286.178,0,-245.524	0/1:145:73,72:73:2566:72:2554:-186.416,0,-187.539	0/0:184:184,0:184:6565:0:0:0,-55.3895,-590.927	0/1:144:55,89:55:1955:89:3183:-243.336,0,-132.877	0/0:90:89,1:89:3184:1:36:0,-23.4944,-283.186	0/0:89:89,0:89:3160:0:0:0,-26.7917,-284.624	0/0:73:73,0:73:2593:0:0:0,-21.9752,-233.618	0/0:196:196,0:196:6979:0:0:0,-59.0019,-628.176	0/1:177:88,89:88:3106:89:3182:-233.313,0,-226.427	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/1:146:75,71:75:2666:71:2536:-184.539,0,-196.235	0/1:115:53,62:53:1889:62:2220:-165.408,0,-135.668	0/1:104:35,69:35:1252:69:2464:-190.707,0,-81.678	0/0:242:242,0:242:8600:0:0:0,-72.8493,-773.944	0/0:212:212,0:212:7561:0:0:0,-63.8184,-680.532	0/0:92:90,2:90:3170:2:72:0,-20.858,-278.688	0/1:228:120,106:120:4292:106:3792:-273.085,0,-318.065	0/1:148:74,74:74:2639:74:2641:-193.383,0,-193.204	0/0:133:131,1:131:4638:1:36:0,-36.4975,-413.983	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:16:5,11:5:176:11:396:-31.1663,0,-11.3685	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/1:407:181,226:181:6391:226:8079:-604.589,0,-452.763	0/0:91:91,0:91:3236:0:0:0,-27.3937,-291.463	0/0:115:115,0:115:4026:0:0:0,-34.6184,-362.531	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:155:155,0:155:5480:0:0:0,-46.6596,-493.327	0/0:86:86,0:86:3042:0:0:0,-25.8886,-274.008	0/1:215:92,123:92:3292:123:4408:-332.152,0,-231.778	0/1:170:81,89:81:2882:89:3196:-236.687,0,-208.441	0/1:155:83,72:83:2942:72:2569:-184.797,0,-218.355	0/1:78:26,52:26:923:52:1864:-143.931,0,-59.9064	0/1:129:66,63:66:2368:63:2268:-165.527,0,-174.545	0/0:131:128,3:128:4551:3:108:0,-29.3622,-399.684	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:110:37,73:37:1308:73:2608:-201.616,0,-84.9082	0/1:83:48,35:48:1728:35:1256:-88.3598,0,-130.819	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:114:114,0:114:4059:0:0:0,-34.3174,-365.499	0/0:60:60,0:60:2136:0:0:0,-18.0618,-192.508	0/1:19:5,14:5:180:14:504:-39.9703,0,-10.8325	0/1:126:62,64:62:2183:64:2291:-168.51,0,-158.804	0/0:85:85,0:85:3032:0:0:0,-25.5875,-273.111	0/1:14:5,9:5:176:9:324:-25.2905,0,-11.9706	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:88:47,41:47:1683:41:1447:-104.026,0,-125.266	0/0:175:170,5:170:6079:5:176:0,-36.4952,-531.026	0/1:8:1,7:1:32:7:252:-20.6183,0,-0.791073	0/0:99:99,0:99:3522:0:0:0,-29.802,-317.188	0/0:146:146,0:146:5214:0:0:0,-43.9504,-469.396	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.999	0/0:66:65,1:65:2320:1:36:0,-16.2697,-205.462	0/0:134:134,0:134:4800:0:0:0,-40.338,-432.1	0/0:128:125,3:125:4428:3:108:0,-28.4567,-388.616	0/0:120:120,0:120:4272:0:0:0,-36.1236,-383.881	0/0:49:49,0:49:1737:0:0:0,-14.7505,-156.606	0/0:80:80,0:80:2816:0:0:0,-24.0824,-253.68	0/1:33:9,24:9:315:24:864:-68.1462,0,-18.7532	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/1:76:51,25:51:1811:25:880:-56.6312,0,-140.393	0/1:235:118,117:118:4215:117:4188:-306.358,0,-308.789	0/0:82:82,0:82:2901:0:0:0,-24.6845,-261.323	0/0:120:118,1:118:4188:1:36:0,-32.5841,-373.504	0/0:144:144,0:144:5102:0:0:0,-43.3483,-459.323	0/1:29:11,18:11:388:18:648:-49.922,0,-26.5275	0/0:76:76,0:76:2703:0:0:0,-22.8783,-243.514	0/0:112:111,1:111:3962:1:36:0,-30.1171,-353.173	0/0:286:286,0:286:10201:0:0:0,-86.0946,-918.019	0/0:142:142,0:142:5057:0:0:0,-42.7463,-455.276	0/0:182:182,0:182:6450:0:0:0,-54.7875,-580.591	0/1:130:62,68:62:2220:68:2414:-178.375,0,-160.931	0/0:308:308,0:308:10904:0:0:0,-92.7172,-981.267	0/1:48:30,18:30:1068:18:633:-42.7977,0,-81.9826	0/0:157:157,0:157:5548:0:0:0,-47.2617,-499.448	0/0:159:158,1:158:5554:1:27:0,-45.164,-497.287	0/0:114:114,0:114:4058:0:0:0,-34.3174,-365.408	0/1:227:122,105:122:4312:105:3733:-267.831,0,-319.926	0/1:217:81,136:81:2881:136:4870:-373.124,0,-194.202	0/0:151:151,0:151:5386:0:0:0,-45.4555,-484.872	0/0:274:274,0:274:9759:0:0:0,-82.4822,-878.261
chr06	2870510	.	C	T	64752.2	PASS	AB=0.535873;ABP=60.8103;AC=44;AF=0.234043;AN=188;AO=2788;CIGAR=1X;DP=11624;DPB=11624;DPRA=0.914448;EPP=10.4905;EPPR=16.1343;GTI=0;LEN=1;MEANALT=1.0566;MQM=59.7579;MQMR=59.9642;NS=94;NUMALT=1;ODDS=12.2034;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99249;QR=313051;RO=8829;RPL=2768;RPP=5884.6;RPPR=18316.2;RPR=20;RUN=1;SAF=1423;SAP=5.6304;SAR=1365;SRF=4430;SRP=3.24666;SRR=4399;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:107:45,62:45:1612:62:2212:-167.126,0,-113.16	0/0:92:92,0:92:3262:0:0:0,-27.6948,-293.802	0/1:200:88,112:88:3115:112:3975:-297.724,0,-220.37	0/0:191:189,1:189:6705:1:36:0,-53.9572,-599.934	0/1:114:53,61:53:1896:61:2184:-162.509,0,-136.601	0/1:86:40,46:40:1413:46:1638:-121.809,0,-101.577	0/0:114:113,1:113:4009:1:36:0,-30.7191,-357.399	0/1:202:85,117:85:2983:117:4143:-311.905,0,-207.89	0/1:162:64,98:64:2273:98:3486:-264.861,0,-156.064	0/1:108:41,67:41:1435:67:2337:-178.067,0,-96.931	0/1:139:71,68:71:2539:68:2432:-177.29,0,-186.916	0/0:276:276,0:276:9806:0:0:0,-83.0843,-882.487	0/1:204:98,106:98:3489:106:3792:-280.06,0,-252.805	0/1:147:75,72:75:2658:72:2552:-185.631,0,-195.19	0/0:185:185,0:185:6581:0:0:0,-55.6905,-592.366	0/1:140:52,88:52:1829:88:3134:-240.131,0,-122.742	0/0:93:93,0:93:3278:0:0:0,-27.9958,-295.24	0/0:90:90,0:90:3178:0:0:0,-27.0927,-286.243	0/0:76:76,0:76:2668:0:0:0,-22.8783,-240.361	0/0:195:195,0:195:6916:0:0:0,-58.7008,-622.51	0/1:176:90,86:90:3171:86:3056:-222.278,0,-232.631	0/0:76:76,0:76:2692:0:0:0,-22.8783,-242.524	0/1:147:75,72:75:2687:72:2580:-188.195,0,-197.823	0/1:115:53,62:53:1855:62:2220:-165.408,0,-132.608	0/1:104:36,68:36:1268:68:2419:-186.659,0,-83.1128	0/0:240:240,0:240:8435:0:0:0,-72.2472,-759.163	0/0:209:209,0:209:7455:0:0:0,-62.9153,-670.997	0/0:88:86,2:86:3026:2:72:0,-19.6539,-265.734	0/1:229:121,108:121:4297:108:3839:-276.77,0,-317.973	0/1:146:72,74:72:2551:74:2624:-192.451,0,-185.891	0/0:132:131,1:131:4659:1:36:0,-36.1377,-415.87	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4011	0/1:16:5,11:5:176:11:387:-30.3495,0,-11.3685	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:410:183,227:183:6478:227:8090:-604.678,0,-459.641	0/0:88:88,0:88:3102:0:0:0,-26.4906,-279.407	0/0:112:112,0:112:3960:0:0:0,-33.7154,-356.594	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:150:150,0:150:5343:0:0:0,-45.1545,-481.002	0/0:87:87,0:87:3087:0:0:0,-26.1896,-278.057	0/1:210:86,124:86:3041:124:4403:-332.84,0,-210.702	0/1:169:80,89:80:2868:89:3200:-237.348,0,-207.483	0/1:149:82,67:82:2901:67:2381:-169.689,0,-216.473	0/1:76:24,52:24:841:52:1859:-144.71,0,-53.1281	0/1:127:64,63:64:2265:63:2239:-163.529,0,-165.881	0/0:127:124,3:124:4400:3:100:0,-28.9013,-386.845	0/0:73:73,0:73:2599:0:0:0,-21.9752,-234.159	0/1:114:41,73:41:1447:73:2599:-199.603,0,-96.2077	0/1:82:47,35:47:1660:35:1247:-87.8496,0,-125	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:115:115,0:115:4084:0:0:0,-34.6184,-367.742	0/0:63:63,0:63:2164:0:0:0,-18.9649,-195.019	0/1:18:4,14:4:144:14:504:-40.2713,0,-7.89508	0/1:121:59,62:59:2108:62:2216:-163.263,0,-153.564	0/0:88:88,0:88:3097:0:0:0,-26.4906,-278.955	0/1:15:5,10:5:180:10:360:-28.2279,0,-12.0366	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:89:47,42:47:1675:42:1499:-108.402,0,-124.245	0/0:178:174,4:174:6178:4:144:0,-40.2697,-542.808	0/1:7:1,6:1:36:6:216:-17.6809,0,-1.49106	0/0:101:101,0:101:3579:0:0:0,-30.404,-322.289	0/0:142:142,0:142:5006:0:0:0,-42.7463,-450.689	0/0:72:72,0:72:2553:0:0:0,-21.6742,-230.02	0/0:61:60,1:60:2125:1:32:0,-15.1635,-188.318	0/0:135:135,0:135:4785:0:0:0,-40.639,-430.128	0/0:128:125,3:125:4446:3:108:0,-28.4567,-390.237	0/0:128:128,0:128:4538:0:0:0,-38.5318,-408.097	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.432	0/0:76:76,0:76:2701:0:0:0,-22.8783,-243.333	0/1:31:9,22:9:315:22:783:-61.4587,0,-19.3553	0/0:77:77,0:77:2719:0:0:0,-23.1793,-244.939	0/1:76:53,23:53:1877:23:824:-51.5969,0,-146.329	0/1:233:117,115:117:4135:115:4084:-297.548,0,-302.137	0/0:80:80,0:80:2813:0:0:0,-24.0824,-253.408	0/0:122:122,0:122:4302:0:0:0,-36.7257,-387.36	0/0:144:144,0:144:5136:0:0:0,-43.3483,-462.383	0/1:31:12,19:12:404:19:676:-51.8361,0,-27.3498	0/0:77:77,0:77:2703:0:0:0,-23.1793,-243.514	0/0:107:105,1:105:3745:1:36:0,-28.6707,-333.651	0/0:284:282,0:282:10032:0:0:0,-84.8905,-902.459	0/0:142:141,0:141:5019:0:0:0,-42.4452,-451.5	0/0:185:185,0:185:6595:0:0:0,-55.6905,-593.63	0/1:130:63,67:63:2264:67:2373:-174.683,0,-164.888	0/0:305:305,0:305:10873:0:0:0,-91.8141,-978.472	0/1:47:30,17:30:1080:17:612:-41.066,0,-83.3648	0/0:156:156,0:156:5520:0:0:0,-46.9607,-496.928	0/0:161:161,0:161:5700:0:0:0,-48.4658,-513.117	0/0:116:116,0:116:4127:0:0:0,-34.9195,-371.614	0/1:229:123,106:123:4351:106:3760:-269.661,0,-322.831	0/1:216:82,134:82:2926:134:4778:-365.147,0,-198.494	0/0:158:157,0:157:5518:0:0:0,-47.2617,-496.323	0/0:274:274,0:274:9766:0:0:0,-82.4822,-878.89
chr06	2870534	.	C	T	92536.8	PASS	AB=0.463922;ABP=31.8406;AC=142;AF=0.755319;AN=188;AO=4390;CIGAR=1X;DP=5777;DPB=5777;DPRA=62.7717;EPP=9535.77;EPPR=3014.84;GTI=2;LEN=1;MEANALT=1;MQM=59.9068;MQMR=59.641;NS=94;NUMALT=1;ODDS=1.20304;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156514;QR=49565;RO=1387;RPL=4390;RPP=9535.77;RPPR=3014.84;RPR=0;RUN=1;SAF=0;SAP=9535.77;SAR=4390;SRF=0;SRP=3014.84;SRR=1387;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:40,23:40:1428:23:824:-55.5184,0,-109.853	1/1:28:0,28:0:0:28:996:-89.9099,-8.42884,0	0/1:88:46,42:46:1621:42:1512:-109.884,0,-119.678	1/1:100:0,100:0:0:100:3569:-321.418,-30.103,0	0/1:49:28,21:28:1004:21:756:-53.6168,0,-75.9254	0/1:48:27,21:27:960:21:756:-53.9178,0,-72.2668	1/1:54:1,53:1:36:53:1865:-164.528,-12.6573,0	0/1:91:53,38:53:1900:38:1356:-94.9443,0,-143.653	0/1:83:49,34:49:1756:34:1212:-84.4008,0,-133.052	0/1:56:37,19:37:1316:19:676:-44.3103,0,-101.847	0/1:70:32,38:32:1144:38:1360:-101.628,0,-82.1951	1/1:153:1,152:1:36:152:5404:-482.619,-42.4593,0	0/1:114:58,56:58:2084:56:2000:-145.939,0,-153.504	0/1:83:37,46:37:1307:46:1644:-123.241,0,-92.9214	1/1:97:0,97:0:0:97:3462:-311.784,-29.1999,0	0/1:62:42,20:42:1496:20:712:-45.7428,0,-116.261	1/1:48:2,46:2:72:46:1656:-142.492,-7.61272,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:86:0,86:0:0:86:3069:-276.393,-25.8886,0	0/1:73:29,44:29:1040:44:1564:-119.076,0,-71.93	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:67:37,30:37:1324:30:1053:-74.9096,0,-99.2907	0/1:49:19,30:19:676:30:1072:-82.042,0,-46.3844	0/1:59:39,20:39:1389:20:720:-47.368,0,-107.546	1/1:108:0,108:0:0:108:3831:-344.989,-32.5112,0	1/1:106:0,106:0:0:106:3762:-338.779,-31.9092,0	1/1:44:1,43:1:36:43:1521:-133.583,-9.64705,0	0/1:81:32,49:32:1152:49:1733:-131.869,0,-79.6058	0/1:64:35,29:35:1256:29:1010:-71.942,0,-94.0775	1/1:61:1,60:1:36:60:2156:-190.705,-14.7646,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:10:0,10:0:0:10:360:-32.7304,-3.0103,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:247:151,96:151:5412:96:3417:-232.489,0,-412.842	1/1:32:0,32:0:0:32:1133:-102.277,-9.63296,0	1/1:76:1,75:1:36:75:2692:-238.926,-19.28,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:77:1,76:1:36:76:2683:-238.113,-19.581,0	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	0/1:94:48,46:48:1696:46:1634:-119.052,0,-124.618	0/1:76:35,41:35:1256:41:1464:-109.178,0,-90.467	0/1:87:45,42:45:1608:42:1496:-108.745,0,-118.815	0/1:28:20,8:20:716:8:288:-17.8386,0,-55.3981	0/1:74:40,34:40:1440:34:1216:-87.4703,0,-107.6	1/1:73:3,70:3:108:70:2487:-214.009,-11.9024,0	1/1:45:0,45:0:0:45:1600:-144.289,-13.5464,0	0/1:48:31,17:31:1104:17:604:-40.2412,0,-84.9813	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:63:0,63:0:0:63:2249:-202.672,-18.9649,0	1/1:29:0,29:0:0:29:1040:-93.9097,-8.72987,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1355	0/1:64:37,27:37:1324:27:949:-66.4565,0,-100.182	1/1:45:0,45:0:0:45:1604:-144.649,-13.5464,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3814	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:45:28,17:28:996:17:597:-40.5098,0,-76.3957	1/1:92:3,89:3:108:89:3200:-278.145,-17.6196,0	0/1:6:5,1:5:176:1:25:-0.693683,0,-14.3765	1/1:49:0,49:0:0:49:1737:-156.584,-14.7505,0	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	1/1:41:0,41:0:0:41:1434:-129.352,-12.3422,0	1/1:31:1,30:1:36:30:1076:-93.5546,-5.73366,0	1/1:35:0,35:0:0:35:1218:-109.811,-10.5361,0	1/1:54:0,54:0:0:54:1921:-173.165,-16.2556,0	1/1:60:0,60:0:0:60:2121:-190.757,-18.0618,0	1/1:23:0,23:0:0:23:828:-74.8379,-6.92369,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5275	1/1:37:0,37:0:0:37:1311:-118.276,-11.1381,0	0/1:56:21,35:21:748:35:1252:-96.1274,0,-50.7794	0/1:101:44,57:44:1568:57:2021:-151.759,0,-111.008	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:62:1,61:1:36:61:2154:-190.526,-15.0656,0	1/1:80:0,80:0:0:80:2811:-253.227,-24.0824,0	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:152:0,152:0:0:152:5408:-486.848,-45.7566,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:109:0,109:0:0:109:3916:-352.631,-32.8123,0	0/1:70:40,30:40:1436:30:1072:-75.7204,0,-108.456	1/1:149:0,149:0:0:149:5348:-481.45,-44.8535,0	0/1:29:10,19:10:352:19:684:-53.1605,0,-23.0966	1/1:85:0,85:0:0:85:3045:-274.28,-25.5876,0	1/1:86:2,84:2:72:84:3004:-263.752,-19.0519,0	1/1:51:0,51:0:0:51:1805:-162.73,-15.3525,0	0/1:116:47,69:47:1683:69:2472:-187.814,0,-116.829	0/1:110:67,43:67:2393:43:1540:-105.649,0,-182.507	1/1:65:0,65:0:0:65:2328:-209.713,-19.567,0	1/1:171:0,171:0:0:171:6132:-551.978,-51.4761,0
chr06	2870538	.	C	T	23665.7	PASS	AB=0.536187;ABP=32.2415;AC=45;AF=0.239362;AN=188;AO=1393;CIGAR=1X;DP=5839;DPB=5839;DPRA=0.953743;EPP=3027.87;EPPR=9655.21;GTI=1;LEN=1;MEANALT=1;MQM=59.6195;MQMR=59.9325;NS=94;NUMALT=1;ODDS=1.73459;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49856;QR=158418;RO=4445;RPL=1393;RPP=3027.87;RPPR=9655.21;RPR=0;RUN=1;SAF=0;SAP=3027.87;SAR=1393;SRF=0;SRP=9655.21;SRR=4445;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:23,39:23:828:39:1400:-107.635,0,-56.1803	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/1:90:42,48:42:1512:48:1720:-127.985,0,-109.282	0/0:101:101,0:101:3579:0:0:0,-30.404,-322.315	0/1:52:24,28:24:864:28:1004:-75.0223,0,-62.429	0/1:48:21,27:21:752:27:972:-73.3485,0,-53.5568	0/0:52:51,1:51:1802:1:36:0,-12.0553,-158.856	0/1:89:37,52:37:1298:52:1837:-138.586,0,-90.3253	0/1:84:34,50:34:1224:50:1784:-135.406,0,-85.1805	0/1:59:20,39:20:708:39:1404:-108.812,0,-46.2848	0/1:72:39,33:39:1381:33:1182:-85.0006,0,-102.912	0/0:153:153,0:153:5451:0:0:0,-46.0576,-490.446	0/1:115:58,57:58:2080:57:2044:-149.605,0,-152.835	0/1:86:48,38:48:1728:38:1368:-97.5057,0,-129.894	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.124	0/1:62:20,42:20:701:42:1497:-116.349,0,-44.7479	0/0:49:48,1:48:1713:1:36:0,-11.1522,-150.855	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:87:87,0:87:3100:0:0:0,-26.1896,-279.229	0/1:77:45,32:45:1612:32:1148:-80.4441,0,-122.191	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:67:30,37:30:1072:37:1328:-99.6509,0,-76.6234	0/1:51:30,21:30:1068:21:752:-52.6206,0,-81.0795	0/1:58:20,38:20:686:38:1359:-105.151,0,-44.596	0/0:109:109,0:109:3886:0:0:0,-32.8123,-349.932	0/0:108:108,0:108:3838:0:0:0,-32.5112,-345.614	0/0:44:43,1:43:1525:1:36:0,-9.64704,-133.943	0/1:83:51,32:51:1828:32:1148:-78.6434,0,-139.815	0/1:65:30,35:30:1072:35:1252:-93.4135,0,-77.2255	0/0:65:64,1:64:2266:1:36:0,-15.9687,-200.598	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3757	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:245:95,150:95:3370:150:5358:-408.581,0,-229.16	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/0:78:78,0:78:2762:0:0:0,-23.4803,-248.82	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:95:46,49:46:1652:49:1756:-129.708,0,-120.371	0/1:74:38,36:38:1341:36:1292:-94.3071,0,-98.7118	0/1:88:43,45:43:1548:45:1580:-115.991,0,-113.122	0/1:29:9,20:9:320:20:716:-55.097,0,-20.4125	0/1:73:33,40:33:1180:40:1436:-107.541,0,-84.5329	0/0:74:71,3:71:2514:3:108:0,-12.2035,-216.437	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:48:17,31:17:597:31:1116:-86.0623,0,-39.6067	0/1:35:18,17:18:644:17:612:-44.8774,0,-47.7541	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:65:64,0:64:2292:0:0:0,-19.2659,-206.29	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9516	0/1:8:3,5:3:108:5:180:-14.1355,0,-7.66693	0/1:63:26,37:26:936:37:1307:-98.9583,0,-65.5942	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.368	0/1:8:2,6:2:72:6:212:-17.0156,0,-4.42848	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:45:18,27:18:644:27:972:-74.2388,0,-44.7442	0/0:92:89,3:89:3185:3:108:0,-17.6196,-276.795	0/1:6:1,5:1:36:5:180:-14.7435,0,-1.79209	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.191	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:31:30,1:30:1068:1:36:0,-5.73365,-92.8338	0/0:33:33,0:33:1146:0:0:0,-9.93399,-103.442	0/0:60:60,0:60:2106:0:0:0,-18.0618,-189.806	0/0:61:61,0:61:2188:0:0:0,-18.3628,-196.408	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:14:4,10:4:144:10:352:-27.8014,0,-9.0992	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.808	0/1:58:37,21:37:1316:21:752:-50.5383,0,-101.282	0/1:102:58,44:58:2080:44:1580:-111.786,0,-156.765	0/0:42:42,0:42:1470:0:0:0,-12.6433,-132.59	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.601	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/0:43:43,0:43:1506:0:0:0,-12.9443,-135.829	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:153:153,0:153:5462:0:0:0,-46.0576,-491.703	0/0:69:69,0:69:2449:0:0:0,-20.7711,-220.664	0/0:108:108,0:108:3846:0:0:0,-32.5112,-346.333	0/1:69:29,40:29:1044:40:1436:-108.759,0,-73.5037	0/0:155:153,2:153:5427:2:72:0,-39.8229,-481.722	0/1:29:19,10:19:684:10:360:-23.8227,0,-53.1605	0/0:83:83,0:83:2935:0:0:0,-24.9855,-264.381	0/0:91:90,1:90:3209:1:36:0,-23.7955,-285.43	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.201	0/1:116:67,49:67:2381:49:1756:-123.397,0,-179.627	0/1:108:41,67:41:1472:67:2412:-184.818,0,-100.264	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.015	0/0:175:175,0:175:6246:0:0:0,-52.6802,-561.378
chr06	2925365	.	C	T	186814	PASS	AB=0.495971;ABP=3.62279;AC=145;AF=0.771277;AN=188;AO=8655;CIGAR=1X;DP=10865;DPB=10865;DPRA=0;EPP=18701.7;EPPR=4765.11;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9237;MQMR=56.8579;NS=94;NUMALT=1;ODDS=0.250989;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309557;QR=78938;RO=2209;RPL=8644;RPP=18701.7;RPPR=4765.11;RPR=11;RUN=1;SAF=0;SAP=18797.1;SAR=8655;SRF=0;SRP=4799.79;SRR=2209;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:20,28:20:720:28:1000:-75.8659,0,-50.6462	1/1:263:0,263:0:0:263:9386:-844.703,-79.1709,0	0/1:104:46,58:46:1640:58:2076:-155.803,0,-116.514	1/1:198:0,198:0:0:198:7076:-635.867,-59.6039,0	0/1:101:53,48:53:1900:48:1720:-124.681,0,-140.784	0/1:71:28,43:28:1000:43:1544:-117.88,0,-68.8629	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	0/1:222:104,118:104:3720:118:4240:-314.013,0,-266.361	0/1:95:38,57:38:1364:57:2040:-155.274,0,-94.1582	0/1:130:63,67:63:2249:67:2400:-177.123,0,-163.435	0/1:121:57,64:57:2031:64:2300:-170.836,0,-146.478	1/1:90:0,90:0:0:90:3214:-289.482,-27.0927,0	0/1:101:50,51:50:1796:51:1828:-134.397,0,-131.352	0/1:130:78,52:78:2796:52:1855:-128.094,0,-211.269	1/1:95:0,95:0:0:95:3406:-306.754,-28.5979,0	0/1:76:32,44:32:1140:44:1584:-119.973,0,-79.8801	1/1:118:1,117:1:36:117:4204:-374.942,-31.9243,0	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	1/1:235:2,233:2:72:233:8352:-744.851,-63.9086,0	0/1:175:93,82:93:3321:82:2931:-211.345,0,-246.278	1/1:93:0,93:0:0:93:3313:-298.388,-27.9958,0	0/1:51:26,25:26:921:25:892:-65.2472,0,-67.7751	0/1:148:73,75:73:2616:75:2692:-197.972,0,-190.967	0/1:88:54,34:54:1906:34:1224:-83.9764,0,-145.14	1/1:356:0,356:0:0:356:12729:-1145.43,-107.167,0	1/1:237:0,237:0:0:237:8484:-762.112,-71.3441,0	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	0/1:191:107,84:107:3831:84:3004:-211.201,0,-286.542	0/1:205:104,101:104:3732:101:3594:-260.934,0,-274.205	1/1:97:3,94:3:108:94:3372:-293.625,-19.1295,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5018	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9313	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06205	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:282:145,137:145:5191:137:4895:-355.81,0,-381.996	1/1:163:0,163:0:0:163:5802:-522.294,-49.0679,0	1/1:110:0,110:0:0:110:3944:-355.143,-33.1133,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:170:1,169:1:36:169:6072:-542.983,-47.5785,0	1/1:43:0,43:0:0:43:1544:-139.239,-12.9443,0	0/1:134:56,78:56:2008:78:2781:-210.192,0,-140.565	0/1:88:34,54:34:1224:54:1936:-148.026,0,-83.9128	0/1:95:49,46:49:1760:46:1656:-120.731,0,-130.008	0/1:98:43,55:43:1521:55:1961:-146.406,0,-105.808	0/1:175:88,87:88:3137:87:3112:-226.69,0,-229.794	1/1:257:1,256:1:32:256:9148:-820.096,-74.1661,0	1/1:140:0,140:0:0:140:5003:-450.414,-42.1442,0	0/1:246:128,118:128:4596:118:4179:-302.237,0,-338.512	0/1:167:80,87:80:2849:87:3116:-230.395,0,-206.141	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0015	1/1:189:0,189:0:0:189:6765:-608.921,-56.8947,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:30:24,6:24:856:6:216:-10.7596,0,-68.3065	0/1:144:78,66:78:2792:66:2356:-168.947,0,-208.06	1/1:30:0,30:0:0:30:1076:-97.1505,-9.0309,0	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0686	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3102	0/1:123:71,52:71:2510:52:1856:-130.293,0,-188.132	1/1:146:0,146:0:0:146:5236:-471.376,-43.9504,0	0/1:9:7,2:7:252:2:68:-3.74844,0,-20.3087	1/1:176:0,176:0:0:176:6272:-564.574,-52.9813,0	1/1:236:2,233:2:72:233:8297:-739.777,-64.2683,0	1/1:112:0,112:0:0:112:3993:-359.56,-33.7154,0	1/1:93:0,93:0:0:93:3324:-299.378,-27.9958,0	1/1:158:3,155:3:108:155:5516:-486.494,-37.4924,0	1/1:131:0,131:0:0:131:4696:-421.08,-39.4349,0	1/1:50:0,50:0:0:50:1788:-161.202,-15.0515,0	1/1:127:0,127:0:0:127:4540:-408.767,-38.2308,0	1/1:106:0,106:0:0:106:3812:-343.276,-31.9092,0	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6178	1/1:110:1,109:1:36:109:3896:-347.236,-29.515,0	0/1:90:52,38:52:1851:38:1368:-96.3281,0,-139.011	0/1:163:79,84:79:2809:84:2978:-219.178,0,-203.533	1/1:128:0,128:0:0:128:4564:-410.197,-38.5318,0	1/1:199:4,195:4:144:195:6954:-612.618,-46.5951,0	1/1:187:1,186:1:36:186:6657:-595.609,-52.6953,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6346	1/1:133:0,133:0:0:133:4769:-428.346,-40.037,0	1/1:125:0,125:0:0:125:4476:-403.009,-37.6288,0	1/1:239:0,239:0:0:239:8533:-767.97,-71.9462,0	1/1:117:1,116:1:36:116:4156:-370.626,-31.6239,0	1/1:90:0,90:0:0:90:3220:-290.015,-27.0927,0	0/1:113:52,61:52:1856:61:2192:-163.529,0,-133.204	1/1:172:0,172:0:0:172:6141:-551.772,-51.7772,0	0/1:36:16,20:16:568:20:716:-53.9306,0,-40.5963	1/1:84:0,84:0:0:84:3004:-269.488,-25.2865,0	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	0/1:102:56,46:56:1995:46:1644:-117.544,0,-148.989	0/1:79:46,33:46:1640:33:1188:-83.4472,0,-124.01	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	1/1:128:0,128:0:0:128:4585:-411.276,-38.5318,0
chr06	2972671	.	GAAT	GAAC,AAAC	174344	PASS	AB=0.500324,0.495793;ABP=3.01311,3.48535;AC=147,41;AF=0.781915,0.218085;AN=188;AO=6396,1539;CIGAR=3M1X,1X2M1X;DP=7968;DPB=7968;DPRA=0,0.900055;EPP=13512.2,3284.38;EPPR=5.18177;GTI=2;LEN=1,4;MEANALT=1.81915,2.36957;MQM=59.9823,59.8083;MQMR=60;NS=94;NUMALT=2;ODDS=1.01619;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=228710,52800;QR=35;RO=1;RPL=44,7;RPP=13512.2,3284.38;RPPR=5.18177;RPR=6352,1532;RUN=1,1;SAF=6396,1539;SAP=13891.7,3344.91;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,21,25:0:0:21,25:752,847:-130.349,-69.014,-62.6923,-61.6846,0,-54.1589	1/1:143:0,142,0:0:0:142,0:5064,0:-455.564,-42.7463,0,-455.564,-42.7463,-455.564	1/2:189:0,93,94:0:0:93,94:3319,3193:-529.56,-258.977,-230.981,-270.606,0,-242.309	1/1:147:0,147,0:0:0:147,0:5248,0:-472.457,-44.2514,0,-472.457,-44.2514,-472.457	1/2:44:0,21,22:0:0:21,22:756,761:-123.618,-61.9238,-55.6022,-61.7906,0,-55.168	1/2:49:0,34,15:0:0:34,15:1224,522:-142.673,-42.7924,-32.5574,-100.232,0,-95.7166	1/1:85:0,85,0:0:0:85,0:3048,0:-274.549,-25.5876,0,-274.549,-25.5876,-274.549	1/2:161:0,86,75:0:0:86,75:3064,2568:-458.37,-208.619,-182.73,-250.1,0,-227.523	1/2:67:0,36,31:0:0:36,31:1283,1055:-190.511,-85.9234,-75.0863,-104.936,0,-95.6036	1/2:84:0,49,35:0:0:49,35:1751,1190:-239.603,-96.8271,-82.0766,-143.123,0,-132.587	1/2:27:0,12,15:0:0:12,15:432,504:-76.3156,-41.0556,-37.4432,-35.6088,0,-31.0934	1/1:61:0,60,0:0:0:60,0:2130,0:-191.605,-18.0618,0,-191.605,-18.0618,-191.605	1/2:55:0,29,26:0:0:29,26:1031,908:-158.224,-74.203,-65.4732,-84.3727,0,-76.546	1/2:58:0,24,34:0:0:24,34:846,1182:-165.295,-96.4124,-89.1877,-69.2331,0,-58.9981	1/1:52:0,52,0:0:0:52,0:1857,0:-167.409,-15.6536,0,-167.409,-15.6536,-167.409	1/2:44:0,18,26:0:0:18,26:639,906:-126.095,-74.0277,-68.6091,-52.4197,0,-44.5929	1/1:46:0,46,0:0:0:46,0:1637,0:-147.616,-13.8474,0,-147.616,-13.8474,-147.616	1/1:50:0,50,0:0:0:50,0:1800,0:-162.282,-15.0515,0,-162.282,-15.0515,-162.282	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:118:0,115,1:0:0:115,1:4103,25:-369.147,-34.6185,0,-367.199,-32.6746,-366.898	1/2:133:0,85,47:0:0:85,47:3052,1619:-380.569,-131.596,-106.009,-249.07,0,-234.922	1/1:117:0,117,0:0:0:117,0:4199,0:-378.089,-35.2205,0,-378.089,-35.2205,-378.089	1/2:78:0,33,45:0:0:33,45:1188,1525:-220.925,-123.982,-114.048,-97.2946,0,-83.7483	1/2:102:0,57,45:0:0:57,45:2039,1557:-293.143,-126.872,-109.713,-166.623,0,-153.076	1/2:110:0,44,66:0:0:44,66:1557,2187:-304.058,-177.229,-163.983,-127.174,0,-107.306	1/1:287:0,287,0:0:0:287,0:10290,0:-926.022,-86.3956,0,-926.022,-86.3956,-926.022	1/1:309:0,308,0:0:0:308,0:11008,0:-990.335,-92.7172,0,-990.335,-92.7172,-990.335	1/1:27:0,27,0:0:0:27,0:960,0:-86.7163,-8.12781,0,-86.7163,-8.12781,-86.7163	1/2:257:0,118,137:0:0:118,137:4236,4690:-726.097,-380.708,-345.187,-345.434,0,-304.193	1/2:107:0,52,55:0:0:52,55:1851,1882:-303.966,-153.099,-137.445,-151.216,0,-134.659	1/1:94:0,92,1:0:0:92,1:3304,36:-297.218,-27.6948,0,-294.281,-24.7573,-293.98	1/2:9:0,1,8:0:0:1,8:36,274:-25.5241,-22.5847,-22.2837,-3.29724,0,-0.889005	1/1:7:0,7,0:0:0:7,0:242,0:-22.1168,-2.10721,0,-22.1168,-2.10721,-22.1168	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:159:0,74,84:0:0:74,84:2656,2903:-452.521,-235.864,-213.587,-216.65,0,-191.363	1/1:162:0,162,0:0:0:162,0:5770,0:-519.417,-48.7669,0,-519.417,-48.7669,-519.417	1/1:39:0,39,0:0:0:39,0:1404,0:-126.659,-11.7402,0,-126.659,-11.7402,-126.659	1/2:5:0,4,1:0:0:4,1:144,35:-14.9552,-3.1976,-1.99348,-12.1095,0,-11.8085	1/1:62:0,61,0:0:0:61,0:2179,0:-196.094,-18.3628,0,-196.094,-18.3628,-196.094	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/2:110:0,58,52:0:0:58,52:2075,1771:-313.228,-144.016,-126.556,-169.56,0,-153.907	1/2:47:0,29,17:0:0:29,17:1044,591:-133.231,-48.0386,-39.3087,-85.1851,0,-80.0676	1/2:48:0,21,27:0:0:21,27:756,942:-138.655,-76.9648,-70.6431,-62.0456,0,-53.9178	1/2:88:0,41,47:0:0:41,47:1467,1624:-251.928,-132.297,-119.955,-119.983,0,-105.835	1/2:125:0,73,52:0:0:73,52:2611,1812:-360.572,-147.662,-125.686,-213.262,0,-197.609	1/1:189:0,187,0:0:0:187,0:6681,0:-601.051,-56.2926,0,-601.051,-56.2926,-601.051	1/1:99:1,96,0:1:35:96,0:3440,0:-306.311,-26.0528,0,-306.612,-28.8989,-309.46	1/2:114:0,55,59:0:0:55,59:1955,2063:-327.493,-168.178,-151.621,-159.668,0,-141.907	1/2:134:0,73,60:0:0:73,60:2620,2075:-382.338,-168.639,-146.664,-213.788,0,-195.727	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:142:0,142,0:0:0:142,0:5078,0:-457.155,-42.7463,0,-457.155,-42.7463,-457.155	1/1:39:0,39,0:0:0:39,0:1385,0:-124.947,-11.7402,0,-124.947,-11.7402,-124.947	1/2:9:0,1,7:0:0:1,7:36,231:-21.5898,-18.6495,-18.3484,-2.93742,0,-0.830207	1/2:115:0,60,55:0:0:60,55:2129,1882:-326.564,-153.097,-135.035,-173.815,0,-157.258	1/1:40:0,40,0:0:0:40,0:1432,0:-129.178,-12.0412,0,-129.178,-12.0412,-129.178	1/2:5:0,3,2:0:0:3,2:108,65:-14.4042,-5.57097,-4.66788,-9.17208,0,-8.57002	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.0469,0,-14.4449	1/2:62:0,36,26:0:0:36,26:1296,886:-177.981,-72.2227,-61.3856,-106.107,0,-98.2801	1/1:92:0,91,0:0:0:91,0:3268,0:-294.088,-27.3937,0,-294.088,-27.3937,-294.088	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:192:0,190,0:0:0:190,0:6775,0:-609.463,-57.1957,0,-609.463,-57.1957,-609.463	1/1:225:0,225,0:0:0:225,0:8062,0:-725.596,-67.7318,0,-725.596,-67.7318,-725.596	1/1:53:0,53,0:0:0:53,0:1900,0:-171.278,-15.9546,0,-171.278,-15.9546,-171.278	1/1:99:0,99,0:0:0:99,0:3545,0:-318.888,-29.802,0,-318.888,-29.802,-318.888	1/1:165:0,162,1:0:0:162,1:5790,36:-520.901,-48.7669,0,-517.963,-45.8045,-517.662	1/1:131:0,128,3:0:0:128,3:4587,108:-412.634,-38.5318,0,-403.822,-29.3598,-402.918	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:54:0,54,0:0:0:54,0:1936,0:-174.516,-16.2556,0,-174.516,-16.2556,-174.516	1/1:76:0,76,0:0:0:76,0:2723,0:-245.312,-22.8783,0,-245.312,-22.8783,-245.312	1/2:21:0,13,8:0:0:13,8:468,269:-60.2841,-22.0826,-18.1692,-38.5463,0,-36.138	1/1:179:0,179,0:0:0:179,0:6393,0:-575.459,-53.8844,0,-575.459,-53.8844,-575.459	1/2:64:0,22,42:0:0:22,42:784,1458:-182.779,-118.871,-112.248,-64.2613,0,-51.618	1/2:142:0,71,69:0:0:71,69:2537,2349:-397.325,-190.468,-169.095,-206.846,0,-186.075	1/1:113:0,113,0:0:0:113,0:4041,0:-363.877,-34.0164,0,-363.877,-34.0164,-363.877	1/1:102:0,101,0:0:0:101,0:3623,0:-325.914,-30.404,0,-325.914,-30.404,-325.914	1/1:92:0,91,1:0:0:91,1:3255,36:-292.811,-27.3937,0,-289.873,-24.0965,-289.572	1/2:18:0,8,10:0:0:8,10:288,347:-52.059,-28.5538,-26.1456,-23.8592,0,-20.8489	1/1:116:0,115,0:0:0:115,0:4109,0:-369.741,-34.6185,0,-369.741,-34.6185,-369.741	1/1:94:0,93,0:0:0:93,0:3344,0:-300.964,-27.9958,0,-300.964,-27.9958,-300.964	1/1:198:0,197,0:0:0:197,0:7042,0:-633.611,-59.3029,0,-633.611,-59.3029,-633.611	1/1:59:0,59,0:0:0:59,0:2124,0:-191.428,-17.7608,0,-191.428,-17.7608,-191.428	1/1:34:0,34,0:0:0:34,0:1206,0:-108.844,-10.235,0,-108.844,-10.235,-108.844	1/2:66:0,38,28:0:0:38,28:1355,967:-189.373,-78.9122,-67.473,-110.811,0,-102.382	1/1:102:0,102,0:0:0:102,0:3647,0:-328.434,-30.7051,0,-328.434,-30.7051,-328.434	1/2:23:0,11,12:0:0:11,12:396,421:-66.9281,-34.6121,-31.3008,-32.6714,0,-29.0591	1/1:53:0,53,0:0:0:53,0:1890,0:-170.378,-15.9546,0,-170.378,-15.9546,-170.378	1/1:61:0,61,0:0:0:61,0:2167,0:-195.296,-18.3628,0,-195.296,-18.3628,-195.296	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/2:57:0,21,36:0:0:21,36:733,1244:-161.044,-101.424,-95.1023,-59.968,0,-49.131	1/2:49:0,15,34:0:0:15,34:540,1146:-137.263,-93.1947,-88.6793,-44.4211,0,-34.1861	1/1:108:0,108,0:0:0:108,0:3839,0:-345.699,-32.5112,0,-345.699,-32.5112,-345.699	1/1:69:0,69,0:0:0:69,0:2467,0:-222.283,-20.7711,0,-222.283,-20.7711,-222.283
chr06	3018962	.	GTTCT	ATTCT,ATT	155237	PASS	AB=0.599135,0.39726;ABP=239.806,257.34;AC=140,42;AF=0.769231,0.230769;AN=182;AO=6278,1107;CIGAR=1X4M,1X1M2D1M;DP=7423;DPB=6980.2;DPRA=82.4667,0.797868;EPP=13635.5,2406.83;EPPR=0;GTI=7;LEN=1,3;MEANALT=1.9,2.26667;MQM=53.704,31.7967;MQMR=0;NS=91;NUMALT=2;ODDS=1.66946;PAIRED=0,0;PAIREDR=0;PAO=3.5,2.5;PQA=124,88;PQR=0;PRO=0;QA=224402,39148;QR=0;RO=0;RPL=6278,1107;RPP=13635.5,2406.83;RPPR=0;RPR=0,0;RUN=1,1;SAF=6278,1107;SAP=13635.5,2406.83;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:17:0,10,7:0:0:10,7:352,252:-44.8499,-16.3182,-13.3079,-28.8452,0,-26.738	1/1:129:0,128,0:0:0:128,0:4566,0:-408.461,-38.5318,0,-408.461,-38.5318,-408.461	1/2:153:0,109,43:0:0:109,43:3907,1514:-414.181,-96.7172,-63.905,-317.439,0,-304.495	1/1:102:0,102,0:0:0:102,0:3659,0:-328.454,-30.7051,0,-328.454,-30.7051,-328.454	1/2:51:0,33,18:0:0:33,18:1188,644:-140.799,-44.1119,-34.1779,-97.0102,0,-91.5917	1/2:30:0,12,18:0:0:12,18:432,628:-76.043,-41.0442,-37.4319,-35.3271,0,-29.9085	1/1:76:0,74,0:0:0:74,0:2648,0:-237.997,-22.2762,0,-237.997,-22.2762,-237.997	1/2:74:0,40,33:0:0:40,33:1422,1158:-189.885,-75.0093,-62.9681,-115.006,0,-105.072	1/2:57:0,36,20:0:0:36,20:1292,709:-151.127,-46.2066,-35.3696,-105,0,-98.979	1/2:47:0,15,32:0:0:15,32:540,1118:-120.239,-76.1928,-71.6773,-44.3858,0,-34.7528	1/2:49:0,28,21:0:0:28,21:989,743:-129.784,-49.7203,-41.2914,-80.3832,0,-74.0616	1/1:74:0,74,0:0:0:74,0:2635,0:-235.756,-22.2762,0,-235.756,-22.2762,-235.756	1/2:62:0,27,34:0:0:27,34:968,1222:-156.865,-78.1055,-69.9776,-78.7487,0,-68.5137	1/2:71:0,37,34:0:0:37,34:1314,1181:-186.692,-80.2898,-69.1517,-106.725,0,-96.4901	1/1:60:0,60,0:0:0:60,0:2142,0:-192.547,-18.0618,0,-192.547,-18.0618,-192.547	1/2:43:0,21,21:0:0:21,21:756,745:-111.038,-49.4388,-43.1171,-61.7268,0,-55.4051	1/1:74:0,73,0:0:0:73,0:2603,0:-232.889,-21.9752,0,-232.889,-21.9752,-232.889	1/1:61:0,60,0:0:0:60,0:2152,0:-192.821,-18.0618,0,-192.821,-18.0618,-192.821	1/1:36:0,36,0:0:0:36,0:1288,0:-115.455,-10.8371,0,-115.455,-10.8371,-115.455	1/1:147:0,144,1:0:0:144,1:5161,36:-463.384,-43.3483,0,-460.874,-40.8416,-460.573	1/2:98:0,50,48:0:0:50,48:1782,1704:-256.571,-112.647,-97.5959,-144.246,0,-129.797	1/1:79:0,79,0:0:0:79,0:2806,0:-252.281,-23.7814,0,-252.281,-23.7814,-252.281	1/2:33:0,25,8:0:0:25,8:900,288:-92.7252,-19.4731,-11.9473,-73.5662,0,-71.158	1/2:71:0,45,26:0:0:45,26:1620,932:-194.577,-62.8124,-49.2661,-132.086,0,-124.259	1/2:47:0,27,20:0:0:27,20:968,714:-127.17,-48.3117,-40.1839,-79.1828,0,-73.1622	1/1:193:0,192,0:0:0:192,0:6829,0:-612.325,-57.7978,0,-612.325,-57.7978,-612.325	1/1:210:0,209,0:0:0:209,0:7483,0:-670.238,-62.9153,0,-670.238,-62.9153,-670.238	1/1:39:0,38,0:0:0:38,0:1363,0:-122.187,-11.4391,0,-122.187,-11.4391,-122.187	1/2:210:0,144,66:0:0:144,66:5155,2303:-584.04,-164.209,-120.861,-420.155,0,-400.287	1/2:110:0,74,36:0:0:74,36:2644,1286:-297.132,-82.2918,-60.0156,-215.091,0,-204.254	1/1:77:0,77,0:0:0:77,0:2760,0:-247.961,-23.1793,0,-247.961,-23.1793,-247.961	.:.:.:.:.:.:.:.	1/1:8:0,8,0:0:0:8,0:288,0:-26.2302,-2.40824,0,-26.2302,-2.40824,-26.2302	.:.:.:.:.:.:.:.	1/2:7:0,6,1:0:0:6,1:216,36:-20.2157,-2.60173,-0.795554,-17.914,0,-17.613	1/1:9:0,9,0:0:0:9,0:324,0:-29.4317,-2.70927,0,-29.4317,-2.70927,-29.4317	1/2:230:0,121,108:0:0:121,108:4340,3843:-627.529,-274.193,-237.769,-353.39,0,-320.879	1/1:166:0,164,0:0:0:164,0:5870,0:-526.066,-49.3689,0,-526.066,-49.3689,-526.066	1/1:56:0,56,0:0:0:56,0:2008,0:-179.946,-16.8577,0,-179.946,-16.8577,-179.946	.:.:.:.:.:.:.:.	1/1:112:0,111,0:0:0:111,0:3981,0:-356.152,-33.4143,0,-356.152,-33.4143,-356.152	1/1:40:0,40,0:0:0:40,0:1432,0:-128.498,-12.0412,0,-128.498,-12.0412,-128.498	1/2:105:0,80,25:0:0:80,25:2859,854:-292.036,-59.7763,-35.6939,-232.572,0,-225.046	1/2:64:0,30,34:0:0:30,34:1076,1204:-171.575,-83.9404,-74.9095,-87.969,0,-77.734	1/2:89:0,43,45:0:0:43,45:1535,1593:-236.482,-111.436,-98.4918,-125.157,0,-111.61	1/2:73:0,37,36:0:0:37,36:1324,1272:-199.735,-91.8918,-80.7537,-108.18,0,-97.3426	1/2:170:0,111,58:0:0:111,58:3936,2036:-449.254,-131.567,-98.1525,-317.785,0,-300.325	1/1:190:0,186,0:0:0:186,0:6626,0:-594.36,-55.9916,0,-594.36,-55.9916,-594.36	1/1:103:0,102,0:0:0:102,0:3652,0:-327.344,-30.7051,0,-327.344,-30.7051,-327.344	1/2:132:0,101,30:0:0:101,30:3607,1056:-366.51,-73.2373,-42.8332,-293.367,0,-284.337	1/2:87:0,41,46:0:0:41,46:1460,1619:-235.674,-116.786,-104.444,-119.225,0,-105.377	1/2:6:0,2,4:0:0:2,4:72,144:-16.2392,-10.3533,-9.75128,-6.22973,0,-5.02561	1/1:86:0,86,0:0:0:86,0:3071,0:-275.622,-25.8886,0,-275.622,-25.8886,-275.622	1/1:16:0,16,0:0:0:16,0:572,0:-51.7425,-4.81648,0,-51.7425,-4.81648,-51.7425	1/2:11:0,8,3:0:0:8,3:284,103:-30.2088,-7.07861,-4.67037,-23.434,0,-22.5309	1/2:104:0,74,30:0:0:74,30:2652,1072:-287.927,-72.4978,-50.2216,-215.747,0,-206.716	1/1:43:0,43,0:0:0:43,0:1525,0:-137.432,-12.9443,0,-137.432,-12.9443,-137.432	2/2:1:0,0,1:0:0:0,1:0,36:-3.24616,-3.24616,-3.24616,-0.30103,-0.30103,0	1/2:7:0,6,1:0:0:6,1:212,36:-20.2286,-2.94513,-1.13895,-17.6121,0,-17.3111	1/2:65:0,46,19:0:0:46,19:1625,682:-176.455,-44.7192,-30.8718,-132.046,0,-126.327	1/1:116:0,116,0:0:0:116,0:4168,0:-373.832,-34.9195,0,-373.832,-34.9195,-373.832	1/2:6:0,5,1:0:0:5,1:180,36:-17.5374,-2.82261,-1.31746,-15.035,0,-14.7339	1/1:117:0,116,0:0:0:116,0:4146,0:-372.605,-34.9195,0,-372.605,-34.9195,-372.605	1/1:131:0,130,1:0:0:130,1:4658,36:-418.057,-39.1339,0,-415.547,-36.3113,-415.246	1/1:58:0,58,0:0:0:58,0:2072,0:-185.866,-17.4597,0,-185.866,-17.4597,-185.866	1/1:88:0,88,0:0:0:88,0:3104,0:-278.51,-26.4906,0,-278.51,-26.4906,-278.51	1/1:105:0,103,1:0:0:103,1:3691,36:-331.623,-31.0061,0,-329.114,-28.497,-328.813	1/1:60:0,60,0:0:0:60,0:2156,0:-194.163,-18.0618,0,-194.163,-18.0618,-194.163	1/1:33:0,33,0:0:0:33,0:1176,0:-105.728,-9.93399,0,-105.728,-9.93399,-105.728	1/1:52:0,52,0:0:0:52,0:1872,0:-167.596,-15.6536,0,-167.596,-15.6536,-167.596	1/1:76:0,76,0:0:0:76,0:2724,0:-244.998,-22.8783,0,-244.998,-22.8783,-244.998	1/2:7:0,3,4:0:0:3,4:108,144:-19.1788,-10.3533,-9.45025,-9.16481,0,-7.96069	1/1:126:0,125,0:0:0:125,0:4450,0:-398.274,-37.6288,0,-398.274,-37.6288,-398.274	1/2:49:0,34,15:0:0:34,15:1201,523:-131.72,-34.1554,-23.9203,-97.87,0,-93.3546	1/2:78:0,44,34:0:0:44,34:1576,1192:-205.988,-78.2609,-65.0155,-128.045,0,-117.81	1/1:139:0,139,0:0:0:139,0:4973,0:-446.758,-41.8432,0,-446.758,-41.8432,-446.758	1/1:157:0,157,0:0:0:157,0:5620,0:-503.4,-47.2617,0,-503.4,-47.2617,-503.4	1/1:88:0,88,0:0:0:88,0:3152,0:-282.371,-26.4906,0,-282.371,-26.4906,-282.371	1/2:7:0,3,4:0:0:3,4:108,144:-18.3534,-9.53611,-8.63302,-9.14675,0,-7.94263	1/1:96:0,95,1:0:0:95,1:3390,36:-304.187,-28.5979,0,-301.74,-25.8443,-301.439	1/1:143:0,143,0:0:0:143,0:5115,0:-457.096,-43.0473,0,-457.096,-43.0473,-457.096	1/1:153:0,153,0:0:0:153,0:5484,0:-492.62,-46.0576,0,-492.62,-46.0576,-492.62	1/1:115:0,113,0:0:0:113,0:4042,0:-362.791,-34.0164,0,-362.791,-34.0164,-362.791	1/1:79:0,79,0:0:0:79,0:2827,0:-253.958,-23.7814,0,-253.958,-23.7814,-253.958	1/2:84:0,44,40:0:0:44,40:1566,1436:-226.762,-99.7632,-86.5178,-127.33,0,-115.288	1/1:148:0,148,0:0:0:148,0:5290,0:-474.556,-44.5524,0,-474.556,-44.5524,-474.556	1/2:31:0,21,10:0:0:21,10:742,360:-82.3245,-22.6621,-16.3405,-59.966,0,-56.9557	1/1:81:0,81,0:0:0:81,0:2891,0:-259.178,-24.3834,0,-259.178,-24.3834,-259.178	1/1:88:0,86,0:0:0:86,0:3084,0:-275.766,-25.8886,0,-275.766,-25.8886,-275.766	1/1:31:0,31,0:0:0:31,0:1108,0:-99.8723,-9.33193,0,-99.8723,-9.33193,-99.8723	1/2:90:0,53,36:0:0:53,36:1896,1272:-239.037,-84.9093,-68.9547,-154.169,0,-143.332	1/2:49:0,16,33:0:0:16,33:568,1170:-125.96,-79.7235,-74.907,-46.5735,0,-36.6395	1/1:77:0,76,0:0:0:76,0:2728,0:-243.961,-22.8783,0,-243.961,-22.8783,-243.961	1/1:105:0,103,0:0:0:103,0:3665,0:-328.888,-31.0061,0,-328.888,-31.0061,-328.888
chr06	3019055	.	T	C	24262.6	PASS	AB=0.482119;ABP=11.3971;AC=44;AF=0.236559;AN=186;AO=1489;CIGAR=1X;DP=7556;DPB=7556;DPRA=0.882134;EPP=3227.65;EPPR=13075.4;GTI=2;LEN=1;MEANALT=1.02;MQM=59.9919;MQMR=59.9914;NS=93;NUMALT=1;ODDS=0.951856;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53008;QR=204348;RO=6060;RPL=1488;RPP=3227.65;RPPR=13075.4;RPR=1;RUN=1;SAF=0;SAP=3236.33;SAR=1489;SRF=0;SRP=13162.1;SRR=6060;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:9,9:9:294:9:309:-22.7222,0,-21.357	0/0:109:109,0:109:3666:0:0:0,-32.8123,-330.139	0/1:90:51,39:51:1703:39:1388:-98.1255,0,-126.441	0/0:179:179,0:179:6170:0:0:0,-53.8844,-555.403	0/1:70:36,34:36:1273:34:1212:-88.3142,0,-93.7988	0/1:72:43,28:43:1449:28:1008:-69.3034,0,-108.961	0/0:84:84,0:84:2914:0:0:0,-25.2865,-262.49	0/1:154:96,58:96:3257:58:2061:-139.401,0,-246.99	0/1:84:52,32:52:1750:32:1118:-75.637,0,-132.483	0/1:92:45,47:45:1574:47:1684:-124.152,0,-114.252	0/1:44:24,20:24:792:20:720:-51.8835,0,-58.3361	0/0:71:71,0:71:2416:0:0:0,-21.3731,-217.687	0/1:81:53,28:53:1655:28:1008:-66.6529,0,-124.825	0/1:63:21,42:21:748:42:1512:-117.41,0,-48.6804	0/0:65:65,0:65:2241:0:0:0,-19.5669,-201.947	0/1:60:30,30:30:1019:30:1065:-78.098,0,-73.9494	0/0:56:56,0:56:1910:0:0:0,-16.8577,-172.167	0/0:50:50,0:50:1750:0:0:0,-15.0515,-157.78	0/0:50:50,0:50:1717:0:0:0,-15.0515,-154.805	0/0:172:171,0:171:5726:0:0:0,-51.4761,-515.106	0/1:85:58,27:58:1929:27:957:-60.8563,0,-148.284	0/0:96:95,0:95:3193:0:0:0,-28.5978,-287.226	0/1:34:24,10:24:800:10:356:-22.1462,0,-62.0679	0/1:76:28,48:28:921:48:1693:-129.776,0,-60.3074	0/1:44:28,16:28:891:16:546:-36.2139,0,-67.2326	0/0:242:242,0:242:8239:0:0:0,-72.8493,-741.536	0/0:211:210,0:210:7127:0:0:0,-63.2163,-641.166	0/0:31:31,0:31:1025:0:0:0,-9.33193,-92.5436	0/1:172:101,71:101:3405:71:2544:-177.434,0,-254.881	0/1:130:56,74:56:1826:74:2633:-198.082,0,-125.467	0/0:50:50,0:50:1671:0:0:0,-15.0515,-150.663	1/1:23:2,21:2:57:21:752:-62.5929,-1.51038,0	0/0:13:13,0:13:444:0:0:0,-3.91339,-40.2841	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:10:6,4:6:182:4:140:-9.93428,0,-13.6676	0/0:7:7,0:7:192:0:0:0,-2.10721,-17.5494	0/1:178:94,84:94:3220:84:3000:-216.649,0,-236.435	0/0:208:207,0:207:6611:0:0:0,-62.3132,-594.874	0/0:81:81,0:81:2779:0:0:0,-24.3834,-250.345	.:.:.:.:.:.:.:.	0/0:110:110,0:110:3647:0:0:0,-33.1133,-328.431	0/0:36:36,0:36:1255:0:0:0,-10.8371,-113.249	0/1:98:46,52:46:1502:52:1863:-138.448,0,-105.95	0/1:48:21,27:21:737:27:957:-71.9921,0,-52.2012	0/1:60:30,30:30:995:30:1076:-79.0911,0,-71.7843	0/1:87:41,46:41:1432:46:1652:-122.779,0,-102.983	0/1:125:58,67:58:1944:67:2392:-177.909,0,-137.594	0/0:122:120,2:120:3967:2:72:0,-29.8889,-350.379	0/0:64:64,0:64:2028:0:0:0,-19.2659,-182.767	0/1:111:50,61:50:1694:61:2192:-164.131,0,-119.319	0/1:170:96,74:96:3300:74:2629:-185.681,0,-246.04	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:130:130,0:130:4372:0:0:0,-39.1339,-393.652	0/0:33:33,0:33:1111:0:0:0,-9.93399,-100.287	0/1:15:5,10:5:135:10:360:-28.2289,0,-7.90123	0/1:121:71,50:71:2348:50:1758:-122.075,0,-175.14	0/0:23:23,0:23:704:0:0:0,-6.92369,-63.5568	0/1:6:3,3:3:93:3:108:-8.26899,0,-6.87055	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/1:48:25,23:25:877:23:782:-56.2415,0,-64.7958	0/0:103:103,0:103:3529:0:0:0,-31.0061,-317.816	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/0:140:138,2:138:4578:2:72:0,-35.3075,-405.348	0/0:139:139,0:139:4701:0:0:0,-41.8432,-423.249	0/0:85:81,4:81:2705:4:129:0,-13.6599,-231.756	0/0:81:80,0:80:2723:0:0:0,-24.0824,-245.008	0/0:99:98,0:98:3198:0:0:0,-29.5009,-287.671	0/0:94:94,0:94:3094:0:0:0,-28.2968,-278.68	0/0:15:15,0:15:501:0:0:0,-4.51545,-45.4049	0/0:70:70,0:70:2376:0:0:0,-21.0721,-214.088	0/0:79:79,0:79:2736:0:0:0,-23.7814,-246.481	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:91:91,0:91:3079:0:0:0,-27.3937,-277.331	0/1:79:36,43:36:1110:43:1521:-113.4,0,-76.3917	0/1:158:87,71:87:3006:71:2533:-180.657,0,-223.205	0/0:114:114,0:114:3878:0:0:0,-34.3174,-349.216	0/0:103:103,0:103:3484:0:0:0,-31.0061,-313.577	0/0:91:90,1:90:3060:1:36:0,-23.7955,-272.025	0/1:31:16,15:16:564:15:525:-38.2461,0,-41.7584	0/0:72:71,1:71:2381:1:36:0,-18.0759,-210.937	0/0:80:80,0:80:2649:0:0:0,-24.0824,-238.645	0/0:184:183,1:183:6219:1:36:0,-51.7912,-556.218	0/0:92:92,0:92:3093:0:0:0,-27.6948,-278.588	0/0:53:53,0:53:1873:0:0:0,-15.9546,-168.847	0/1:78:38,40:38:1303:40:1421:-104.705,0,-94.0826	0/0:125:125,0:125:4317:0:0:0,-37.6287,-388.706	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	0/0:76:76,0:76:2602:0:0:0,-22.8783,-234.421	0/0:58:58,0:58:2042:0:0:0,-17.4597,-184.049	0/0:37:37,0:37:1260:0:0:0,-11.1381,-113.692	0/1:83:31,52:31:1048:52:1856:-142.334,0,-69.6322	0/1:75:19,56:19:642:56:2000:-157.695,0,-35.5168	0/0:50:50,0:50:1659:0:0:0,-15.0515,-149.583	0/0:89:88,1:88:3009:1:36:0,-23.1934,-267.436
chr06	3025411	.	ATAA	ATAC	126622	PASS	AB=0.529926;ABP=26.1444;AC=145;AF=0.77957;AN=186;AO=5866;CIGAR=3M1X;DP=7282;DPB=7282.5;DPRA=0;EPP=12740.9;EPPR=3032.21;GTI=3;LEN=1;MEANALT=1.19355;MQM=59.9555;MQMR=59.9871;NS=93;NUMALT=1;ODDS=0.0386406;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=16;PQR=0;PRO=1;QA=210261;QR=49454;RO=1395;RPL=0;RPP=12740.9;RPPR=3032.21;RPR=5866;RUN=1;SAF=5866;SAP=12740.9;SAR=0;SRF=1395;SRP=3032.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:13,13:13:467:13:468:-34.632,0,-34.5424	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:112:43,68:43:1494:68:2444:-186.499,0,-101.036	1/1:200:0,200:0:0:200:7161:-644.542,-60.206,0	0/1:16:9,7:9:320:7:248:-17.8477,0,-24.3259	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:74:36,38:36:1290:38:1368:-101.136,0,-94.1279	0/1:74:32,42:32:1144:42:1504:-113.378,0,-80.9936	0/1:104:48,56:48:1705:56:2012:-150.046,0,-122.429	0/1:54:23,29:23:803:29:1035:-77.4475,0,-56.5758	1/1:102:0,102:0:0:102:3653:-328.973,-30.7051,0	0/1:95:51,44:51:1781:44:1580:-113.703,0,-131.972	0/1:103:37,66:37:1321:66:2359:-181.563,0,-88.1858	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	0/1:67:31,36:31:1115:36:1292:-96.4148,0,-80.4927	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:144:89,54:89:3163:54:1932:-130.769,0,-241.503	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	0/1:78:29,49:29:1035:49:1760:-135.204,0,-69.9835	0/1:47:26,21:26:929:21:756:-54.2188,0,-69.7803	0/1:37:11,26:11:379:26:932:-73.0607,0,-23.3028	1/1:157:0,157:0:0:157:5637:-507.445,-47.2617,0	1/1:105:0,105:0:0:105:3761:-338.687,-31.6082,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:218:118,98:118:4167:98:3508:-250.576,0,-309.864	0/1:95:42,53:42:1488:53:1904:-143.04,0,-105.616	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:11:7,4:7:247:4:144:-10.0023,0,-19.2616	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:212:78,132:78:2757:132:4732:-362.463,0,-184.824	1/1:107:0,107:0:0:107:3820:-343.996,-32.2102,0	1/1:57:0,57:0:0:57:2052:-184.845,-17.1587,0	.:.:.:.:.:.:.:.	1/1:77:0,76:0:0:76:2732:-245.782,-22.8783,0	1/1:45:0,45:0:0:45:1620:-146.085,-13.5464,0	0/1:74:32,41:32:1129:41:1464:-109.717,0,-79.5825	0/1:78:36,42:36:1271:42:1504:-112.157,0,-91.2131	0/1:65:33,32:33:1170:32:1148:-84.0629,0,-86.0401	0/1:64:37,27:37:1322:27:968:-68.1714,0,-100.016	0/1:60:25,35:25:886:35:1252:-94.9233,0,-61.997	1/1:145:2,143:2:72:143:5118:-453.896,-36.8126,0	1/1:92:0,92:0:0:92:3303:-297.488,-27.6948,0	0/1:130:62,68:62:2179:68:2428:-179.642,0,-157.241	0/1:103:48,55:48:1714:55:1972:-146.749,0,-123.54	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:52:0,50:0:0:50:1792:-161.203,-15.0515,0	0/1:6:2,4:2:67:4:144:-11.5074,0,-4.55686	0/1:124:65,59:65:2312:59:2117:-153.471,0,-171.013	1/1:25:0,25:0:0:25:887:-80.0763,-7.52575,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:16:6,10:6:211:10:360:-27.9278,0,-14.5168	0/1:54:19,35:19:673:35:1252:-96.7295,0,-44.6412	1/1:128:1,127:1:36:127:4538:-404.986,-34.9336,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:186:0,186:0:0:186:6676:-600.913,-55.9916,0	1/1:125:2,122:2:72:122:4352:-385.061,-30.7643,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:48:0,48:0:0:48:1713:-154.422,-14.4494,0	1/1:119:3,115:3:108:115:4124:-361.288,-25.7463,0	1/1:98:1,97:1:36:97:3480:-309.813,-25.9027,0	1/1:58:0,58:0:0:58:2088:-188.185,-17.4597,0	1/1:57:0,57:0:0:57:2044:-184.224,-17.1587,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	0/1:46:24,22:24:861:22:788:-57.3974,0,-63.9649	1/1:81:0,81:0:0:81:2888:-260.157,-24.3834,0	0/1:109:38,70:38:1330:70:2512:-193.461,0,-87.1273	0/1:105:46,59:46:1635:59:2099:-157.572,0,-115.831	1/1:176:0,176:0:0:176:6289:-566.101,-52.9813,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:98:0,98:0:0:98:3497:-314.937,-29.5009,0	0/1:19:10,9:10:359:9:324:-23.7863,0,-26.9341	1/1:94:1,93:1:36:93:3342:-297.398,-24.6985,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	1/1:185:0,185:0:0:185:6587:-592.908,-55.6906,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:87:0,87:0:0:87:3132:-282.105,-26.1896,0	0/1:48:18,27:18:622:27:972:-73.8836,0,-42.3956	1/1:114:1,113:1:36:113:4060:-361.987,-30.7191,0	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	1/1:83:0,83:0:0:83:2984:-268.791,-24.9855,0	1/1:100:0,100:0:0:100:3592:-323.474,-30.103,0	1/1:69:0,69:0:0:69:2480:-223.448,-20.7711,0	0/1:157:84,72:84:2983:72:2588:-185.848,0,-221.374	0/1:81:52,29:52:1865:29:1040:-69.5309,0,-143.746	1/1:157:0,155:0:0:155:5556:-499.803,-46.6597,0	1/1:116:0,116:0:0:116:4157:-374.249,-34.9195,0
chr06	3025431	.	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chr06	3025469	.	T	C	21671.5	PASS	AB=0.462225;ABP=39.1021;AC=41;AF=0.22043;AN=186;AO=1358;CIGAR=1X;DP=7168;DPB=7168;DPRA=1.07706;EPP=2951.87;EPPR=12612.8;GTI=2;LEN=1;MEANALT=1.06122;MQM=59.986;MQMR=59.9742;NS=93;NUMALT=1;ODDS=0.49381;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48347;QR=207160;RO=5807;RPL=1358;RPP=2951.87;RPPR=12612.8;RPR=0;RUN=1;SAF=1358;SAP=2951.87;SAR=0;SRF=5807;SRP=12612.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:113:71,42:71:2540:42:1512:-102.358,0,-194.835	0/0:197:197,0:197:7039:0:0:0,-59.3029,-633.573	0/1:17:8,9:8:273:9:320:-24.0248,0,-19.7827	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:72:37,35:37:1324:35:1247:-90.8599,0,-97.7879	0/1:74:43,31:43:1523:31:1094:-76.492,0,-115.086	0/1:100:53,47:53:1900:47:1680:-121.384,0,-141.175	0/1:54:29,25:29:1036:25:896:-64.7047,0,-77.296	0/0:100:100,0:100:3562:0:0:0,-30.103,-320.788	0/1:95:45,50:45:1601:50:1781:-131.973,0,-115.589	0/1:101:64,37:64:2278:37:1300:-86.8944,0,-174.877	0/0:79:79,0:79:2822:0:0:0,-23.7814,-254.218	0/1:65:36,29:36:1296:29:1035:-73.8961,0,-97.377	0/0:74:74,0:74:2617:0:0:0,-22.2762,-235.777	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/1:144:56,87:56:1978:87:3056:-231.857,0,-134.884	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:77:48,29:48:1720:29:1031:-69.9233,0,-131.906	0/1:45:21,24:21:756:24:860:-64.1755,0,-54.8209	0/1:34:25,9:25:896:9:320:-18.9073,0,-70.7253	0/0:156:156,0:156:5527:0:0:0,-46.9607,-497.559	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:214:98,116:98:3508:116:4124:-306.924,0,-251.51	0/1:94:54,40:54:1923:40:1421:-99.8886,0,-145.049	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.582	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:212:134,78:134:4800:78:2777:-186.352,0,-368.326	0/0:107:107,0:107:3793:0:0:0,-32.2102,-341.567	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	.:.:.:.:.:.:.:.	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.407	0/1:74:42,32:42:1496:32:1139:-80.5422,0,-112.654	0/1:75:42,33:42:1491:33:1180:-83.9308,0,-111.889	0/1:62:30,32:30:1072:32:1134:-83.7034,0,-78.1286	0/1:63:27,36:27:960:36:1291:-97.5287,0,-67.7514	0/1:59:34,25:34:1212:25:892:-62.8389,0,-91.6256	0/0:142:140,2:140:5007:2:72:0,-35.9095,-443.854	0/0:90:90,0:90:3181:0:0:0,-27.0927,-286.513	0/1:128:67,61:67:2404:61:2171:-157.124,0,-178.085	0/1:98:51,47:51:1824:47:1660:-120.185,0,-134.94	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:71:71,0:71:2521:0:0:0,-21.3731,-227.141	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:119:56,63:56:1986:63:2234:-165.498,0,-143.19	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	0/1:53:35,18:35:1256:18:644:-42.336,0,-97.3861	0/0:127:126,1:126:4511:1:36:0,-34.6325,-402.559	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:183:183,0:183:6548:0:0:0,-55.0885,-589.403	0/0:123:121,2:121:4314:2:72:0,-30.19,-381.6	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.473	0/0:120:117,3:117:4159:3:104:0,-26.4208,-364.792	0/0:99:97,1:97:3452:1:36:0,-26.2625,-307.293	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.825	0/0:56:56,0:56:1960:0:0:0,-16.8577,-176.67	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:41:20,21:20:712:21:750:-55.4837,0,-52.0644	0/0:81:81,0:81:2887:0:0:0,-24.3834,-260.067	0/1:106:69,36:69:2457:36:1283:-83.8047,0,-189.415	0/1:100:55,45:55:1944:45:1595:-113.737,0,-145.131	0/0:169:169,0:169:6033:0:0:0,-50.8741,-543.074	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:95:95,0:95:3365:0:0:0,-28.5978,-303.067	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/0:94:93,1:93:3344:1:36:0,-24.6985,-297.578	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:178:177,1:177:6335:1:36:0,-49.9851,-566.598	0/0:66:66,0:66:2339:0:0:0,-19.868,-210.77	0/0:89:89,0:89:3165:0:0:0,-26.7917,-285.074	0/1:45:29,16:29:1026:16:572:-38.2647,0,-79.1039	0/0:114:113,1:113:4005:1:36:0,-30.7191,-357.041	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.036	0/0:99:99,0:99:3542:0:0:0,-29.802,-318.959	0/0:69:69,0:69:2462:0:0:0,-20.7711,-221.829	0/1:156:74,82:74:2642:82:2940:-217.865,0,-191.065	0/1:79:29,50:29:1044:50:1792:-137.781,0,-70.4934	0/0:158:158,0:158:5624:0:0:0,-47.5627,-506.283	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625
chr06	3042487	.	G	A	15967.3	PASS	AB=0.51119;ABP=5.14864;AC=44;AF=0.236559;AN=186;AO=1021;CIGAR=1X;DP=4708;DPB=4708;DPRA=1.03245;EPP=2220.08;EPPR=7998.37;GTI=0;LEN=1;MEANALT=1.04082;MQM=59.5965;MQMR=59.9316;NS=93;NUMALT=1;ODDS=1.46901;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35533;QR=129824;RO=3682;RPL=1021;RPP=2220.08;RPPR=7998.37;RPR=0;RUN=1;SAF=1021;SAP=2220.08;SAR=0;SRF=3682;SRP=7998.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:8,10:8:284:10:356:-26.9625,0,-20.4848	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:81:41,40:41:1435:40:1413:-102.946,0,-104.869	0/0:57:57,0:57:2010:0:0:0,-17.1587,-181.167	0/1:19:8,11:8:275:11:388:-29.524,0,-19.3639	0/1:31:15,16:15:536:16:559:-41.2975,0,-39.2429	0/0:54:54,0:54:1912:0:0:0,-16.2556,-172.358	0/1:49:21,28:21:743:28:966:-72.496,0,-52.4429	0/1:54:23,30:23:811:30:1051:-78.7335,0,-57.1586	0/1:29:16,13:16:576:13:432:-30.4622,0,-43.4451	0/1:49:19,30:19:662:30:1032:-78.4336,0,-45.1496	0/0:80:80,0:80:2728:0:0:0,-24.0824,-245.761	0/1:58:34,24:34:1157:24:808:-55.5699,0,-86.9665	0/1:68:39,29:39:1370:29:1003:-70.1039,0,-103.07	0/0:39:39,0:39:1373:0:0:0,-11.7402,-123.866	0/1:46:20,26:20:712:26:887:-66.294,0,-50.5593	0/0:51:51,0:51:1792:0:0:0,-15.3525,-161.56	0/0:35:35,0:35:1217:0:0:0,-10.536,-109.831	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/0:60:60,0:60:2130:0:0:0,-18.0618,-191.967	0/1:81:40,41:40:1409:41:1436:-105.144,0,-102.703	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.551	0/1:74:38,36:38:1343:36:1255:-90.9705,0,-98.8931	0/1:39:23,16:23:798:16:572:-40.0686,0,-60.3779	0/1:42:19,23:19:676:23:816:-61.09,0,-48.5247	0/0:137:135,2:135:4759:2:72:0,-34.4044,-421.636	0/0:90:90,0:90:3191:0:0:0,-27.0927,-287.413	0/0:29:29,0:29:1006:0:0:0,-8.72987,-90.8491	0/1:121:63,58:63:2260:58:2039:-147.355,0,-167.238	0/1:105:43,62:43:1531:62:2184:-165.205,0,-106.474	0/0:38:38,0:38:1332:0:0:0,-11.4391,-120.177	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:6,4:6:203:4:131:-9.10317,0,-15.5909	.:.:.:.:.:.:.:.	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:99:54,45:54:1876:45:1548:-109.803,0,-139.312	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/0:60:60,0:60:2054:0:0:0,-18.0618,-185.098	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.664	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/1:74:28,46:28:991:46:1607:-122.489,0,-67.2273	0/1:42:28,14:28:986:14:491:-31.8779,0,-76.4089	0/1:36:18,18:18:644:18:608:-44.1992,0,-47.4535	0/1:55:25,30:25:896:30:1052:-78.432,0,-64.4037	0/1:45:15,30:15:536:30:1042:-80.5408,0,-35.0229	0/0:71:70,1:70:2473:1:27:0,-18.6733,-220.124	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.009	0/1:94:48,46:48:1708:46:1623:-118.027,0,-125.709	0/1:42:22,20:22:792:20:712:-51.7634,0,-58.9624	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:46:46,0:46:1617:0:0:0,-13.8474,-145.817	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/1:14:5,9:5:180:9:312:-24.2009,0,-12.3372	0/1:46:22,23:22:765:23:793:-57.7777,0,-55.2621	0/0:21:21,0:21:715:0:0:0,-6.32163,-64.6638	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:58:25,33:25:892:33:1160:-87.0475,0,-63.1367	0/0:110:110,0:110:3848:0:0:0,-33.1133,-346.512	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.253	0/0:87:86,1:86:3080:1:36:0,-22.5913,-273.83	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/0:19:18,1:18:639:1:32:0,-2.52026,-54.6389	0/0:81:80,1:80:2864:1:36:0,-20.7877,-254.397	0/0:103:103,0:103:3683:0:0:0,-31.0061,-331.673	0/0:50:50,0:50:1741:0:0:0,-15.0515,-156.969	0/0:27:26,0:26:923:0:0:0,-7.82678,-83.0655	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/1:5:3,2:3:108:2:68:-4.92168,0,-8.57002	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:40:12,28:12:419:28:987:-77.0937,0,-26.0015	0/1:110:64,46:64:2284:46:1602:-111.355,0,-172.709	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.114	0/0:83:80,3:80:2838:3:104:0,-15.2827,-245.886	0/0:78:78,0:78:2729:0:0:0,-23.4803,-245.851	0/1:10:6,4:6:216:4:144:-10.2742,0,-16.7802	0/0:39:39,0:39:1382:0:0:0,-11.7402,-124.665	0/0:39:38,0:38:1333:0:0:0,-11.4391,-119.908	0/0:79:79,0:79:2793:0:0:0,-23.7814,-251.607	0/0:30:30,0:30:1039:0:0:0,-9.0309,-93.7291	0/0:53:53,0:53:1858:0:0:0,-15.9546,-167.498	0/1:32:24,8:24:796:8:279:-15.8146,0,-62.3117	0/0:68:67,1:67:2319:1:36:0,-16.8744,-205.369	0/1:14:7,7:7:228:7:248:-18.4465,0,-16.6232	0/0:43:43,0:43:1509:0:0:0,-12.9443,-136.101	0/0:64:64,0:64:2242:0:0:0,-19.2659,-202.041	0/0:76:76,0:76:2653:0:0:0,-22.8783,-239.015	0/1:111:47,64:47:1630:64:2173:-162.413,0,-113.463	0/1:46:21,25:21:744:25:849:-62.8708,0,-53.4369	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:56:55,0:55:1925:0:0:0,-16.5566,-173.282
chr06	3063754	.	GGCAG	GGCGG,GG	98178.4	PASS	AB=0.608547,0.388034;ABP=182.619,194.111;AC=141,47;AF=0.75,0.25;AN=188;AO=3903,750;CIGAR=3M1X1M,1M3D1M;DP=4678;DPB=4226.8;DPRA=50.2903,1.72441;EPP=8469.58,1631.61;EPPR=5.18177;GTI=10;LEN=1,3;MEANALT=2.03226,2.18987;MQM=59.8704,52.6707;MQMR=60;NS=94;NUMALT=2;ODDS=1807.09;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=139576,24342;QR=144;RO=4;RPL=1,0;RPP=8469.58,1631.61;RPPR=5.18177;RPR=3902,750;RUN=1,1;SAF=3903,750;SAP=8478.27,1631.61;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,13,9:0:0:13,9:464,311:-62.8627,-25.0243,-21.111,-38.1841,0,-35.4748	1/1:33:0,33,0:0:0:33,0:1171,0:-105.697,-9.93399,0,-105.697,-9.93399,-105.697	1/2:95:0,74,21:0:0:74,21:2648,683:-270.898,-54.9375,-32.6613,-216.29,0,-209.969	1/1:129:0,126,1:0:0:126,1:4500,32:-404.558,-37.9298,0,-401.98,-35.3581,-401.679	1/2:6:0,4,2:0:0:4,2:144,68:-17.5674,-5.80256,-4.59844,-12.1095,0,-11.5074	1/2:17:0,11,6:0:0:11,6:396,212:-49.7402,-17.422,-14.1107,-32.6714,0,-30.8652	1/1:51:0,50,1:0:0:50,1:1782,32:-160.34,-15.0515,0,-157.762,-12.1532,-157.461	1/2:107:0,57,49:0:0:57,49:2048,1633:-297.35,-130.26,-113.101,-167.09,0,-152.34	1/2:56:0,28,28:0:0:28,28:1000,925:-156.036,-74.4922,-66.0634,-81.8865,0,-73.4577	1/2:55:0,35,20:0:0:35,20:1243,625:-151.727,-50.4874,-39.9513,-101.567,0,-95.5465	1/2:19:0,14,5:0:0:14,5:504,165:-54.7373,-13.5901,-9.37571,-41.4837,0,-39.9785	1/1:62:0,62,0:0:0:62,0:2220,0:-200.064,-18.6639,0,-200.064,-18.6639,-200.064	1/2:68:0,26,42:0:0:26,42:936,1365:-185.234,-108.932,-101.106,-76.6463,0,-64.003	1/2:19:0,12,7:0:0:12,7:432,247:-55.4576,-20.2015,-16.5891,-35.6088,0,-33.5016	1/1:37:0,36,1:0:0:36,1:1296,36:-116.584,-10.8371,0,-113.647,-7.53984,-113.346	1/2:20:0,17,3:0:0:17,3:612,93:-57.5857,-7.6019,-2.48439,-50.2959,0,-49.3928	1/2:10:0,8,1:0:0:8,1:288,36:-26.4344,-2.93495,-0.526712,-23.4993,0,-23.1983	1/1:29:0,27,2:0:0:27,2:972,68:-87.4567,-8.12781,0,-81.9423,-2.27216,-81.3402	1/1:30:1,29,0:1:36:29,0:1040,0:-90.3161,-5.43263,0,-90.6171,-8.72987,-93.5546	1/1:58:0,57,0:0:0:57,0:2048,0:-184.232,-17.1587,0,-184.232,-17.1587,-184.232	1/2:128:0,65,63:0:0:65,63:2276,2019:-347.041,-161.845,-142.278,-185.531,0,-166.566	1/1:75:0,71,4:0:0:71,4:2521,110:-226.811,-21.3731,0,-218.166,-12.4506,-216.962	1/2:53:0,29,24:0:0:29,24:1040,715:-141.67,-56.8092,-48.0793,-85.1845,0,-77.9598	1/2:2:0,1,1:0:0:1,1:36,32:-5.85371,-2.89624,-2.59521,-3.29724,0,-2.99621	1/2:30:0,24,6:0:0:24,6:864,208:-86.377,-15.848,-8.62323,-70.8578,0,-69.0517	1/1:162:0,160,2:0:0:160,2:5673,53:-510.292,-48.1648,0,-506.127,-43.7332,-505.525	1/1:142:0,139,3:0:0:139,3:4972,85:-447.339,-41.8432,0,-440.597,-34.8167,-439.694	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/2:115:1,78,36:1:36:78,36:2804,1085:-312.108,-83.6955,-63.1541,-225.735,0,-217.836	1/2:31:0,17,14:0:0:17,14:612,473:-88.5616,-38.6131,-33.4956,-50.2959,0,-46.0815	1/1:34:0,34,0:0:0:34,0:1220,0:-110.105,-10.235,0,-110.105,-10.235,-110.105	1/2:7:0,5,2:0:0:5,2:180,68:-20.5467,-5.84497,-4.33982,-15.0469,0,-14.4449	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:2:0,1,1:0:0:1,1:36,21:-4.81098,-1.79863,-1.4976,-3.29724,0,-2.99621	1/2:10:0,8,2:0:0:8,2:288,72:-29.5524,-6.04512,-3.63688,-23.8592,0,-23.2571	1/1:12:0,11,1:0:0:11,1:387,36:-34.8068,-3.31133,0,-31.8687,-0.0140851,-31.5677	1/2:103:0,69,34:0:0:69,34:2480,1132:-293.871,-91.7024,-70.9314,-202.51,0,-192.275	1/1:62:0,61,1:0:0:61,1:2157,36:-193.997,-18.3628,0,-191.059,-15.0656,-190.758	1/1:36:0,35,1:0:0:35,1:1244,36:-111.886,-10.5361,0,-108.948,-7.23881,-108.647	2/2:1:0,0,1:0:0:0,1:0,36:-3.59317,-3.59317,-3.59317,-0.30103,-0.30103,0	1/2:60:0,53,6:0:0:53,6:1904,197:-171.316,-15.9583,-0.00369507,-155.402,0,-153.596	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/2:58:0,36,21:0:0:36,21:1296,680:-160.441,-54.6716,-43.8345,-105.747,0,-99.4256	1/2:32:0,19,13:0:0:19,13:678,418:-88.2889,-32.9907,-27.2711,-55.6288,0,-51.7154	1/2:22:0,12,10:0:0:12,10:428,325:-61.3115,-26.4275,-22.8152,-35.2223,0,-32.212	1/2:74:0,47,27:0:0:47,27:1688,888:-209.274,-71.5539,-57.4055,-138.059,0,-129.931	1/2:42:0,17,24:0:0:17,24:608,735:-107.411,-57.8147,-52.6972,-49.588,0,-42.3633	1/1:123:0,120,3:0:0:120,3:4295,89:-386.427,-36.1236,0,-379.323,-28.7223,-378.42	1/1:46:0,46,0:0:0:46,0:1648,0:-148.603,-13.8474,0,-148.603,-13.8474,-148.603	1/2:37:0,24,13:0:0:24,13:864,437:-106.162,-35.6482,-28.4234,-70.8578,0,-66.9445	1/2:35:0,27,8:0:0:27,8:960,261:-99.6501,-21.395,-13.2672,-78.5879,0,-76.1797	1/1:8:0,7,1:0:0:7,1:252,21:-22.8002,-2.10721,0,-21.2301,-0.308376,-20.9291	1/1:51:0,48,2:0:0:48,2:1724,68:-155.053,-14.4494,0,-149.538,-8.94697,-148.936	1/1:31:0,30,1:0:0:30,1:1071,21:-96.4869,-9.0309,0,-94.9027,-7.23198,-94.6017	1/2:5:0,4,1:0:0:4,1:144,36:-15.0386,-3.2882,-2.08408,-12.1095,0,-11.8085	1/2:57:0,30,27:0:0:30,27:1064,882:-157.395,-70.6925,-61.6616,-87.0408,0,-78.913	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/2:12:0,10,2:0:0:10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chr06	3063768	.	CCT	CCG,TCG	104965	PASS	AB=0.554151,0.442001;ABP=49.3394,56.1583;AC=143,45;AF=0.760638,0.239362;AN=188;AO=4024,811;CIGAR=2M1X,1X1M1X;DP=4854;DPB=4854;DPRA=52.1828,0.857631;EPP=8697.64,1686.77;EPPR=3.73412;GTI=8;LEN=1,3;MEANALT=1.67742,2.12245;MQM=59.8661,51.6597;MQMR=60;NS=94;NUMALT=2;ODDS=1.52504;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=143433,28162;QR=84;RO=3;RPL=4019,802;RPP=8697.64,1686.77;RPPR=3.73412;RPR=5,9;RUN=1,1;SAF=4024,811;SAP=8741.02,1764.07;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,13,9:0:0:13,9:459,310:-62.3696,-24.9829,-21.0695,-37.7307,0,-35.0214	1/1:31:0,29,1:0:0:29,1:1038,36:-93.3932,-8.72987,0,-90.4557,-5.7725,-90.1547	1/2:98:0,74,24:0:0:74,24:2642,839:-283.463,-68.0627,-45.7865,-215.749,0,-208.525	1/1:132:0,131,0:0:0:131,0:4681,0:-421.191,-39.4349,0,-421.191,-39.4349,-421.191	1/2:6:0,4,2:0:0:4,2:144,62:-17.0474,-5.26369,-4.05957,-12.1095,0,-11.5074	1/2:17:0,11,6:0:0:11,6:396,214:-49.9191,-17.603,-14.2917,-32.6714,0,-30.8652	1/1:52:0,52,0:0:0:52,0:1864,0:-168.038,-15.6536,0,-168.038,-15.6536,-168.038	1/2:115:0,59,55:0:0:59,55:2094,1894:-322.078,-151.457,-133.696,-170.608,0,-154.052	1/2:63:0,27,36:0:0:27,36:949,1238:-176.977,-99.7287,-91.6009,-77.595,0,-66.7579	1/2:58:0,35,23:0:0:35,23:1250,772:-164.711,-62.8061,-52.2701,-102.249,0,-95.3253	1/2:19:0,14,5:0:0:14,5:504,180:-56.0914,-14.9663,-10.7519,-41.4837,0,-39.9785	1/1:63:0,62,0:0:0:62,0:2232,0:-200.892,-18.6639,0,-200.892,-18.6639,-200.892	1/2:73:0,26,47:0:0:26,47:918,1633:-206.171,-131.424,-123.598,-75.0965,0,-60.9481	1/2:19:0,12,7:0:0:12,7:424,252:-55.1459,-20.6162,-17.0038,-34.8841,0,-32.7768	1/1:37:0,37,0:0:0:37,0:1324,0:-119.462,-11.1381,0,-119.462,-11.1381,-119.462	1/2:21:0,16,5:0:0:16,5:572,180:-60.2218,-13.5595,-8.74301,-46.9969,0,-45.4918	1/1:11:0,10,0:0:0:10,0:360,0:-32.4184,-3.0103,0,-32.4184,-3.0103,-32.4184	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/1:30:0,29,0:0:0:29,0:1027,0:-92.3825,-8.72987,0,-92.3825,-8.72987,-92.3825	1/1:59:0,59,0:0:0:59,0:2120,0:-191.068,-17.7608,0,-191.068,-17.7608,-191.068	1/2:143:0,67,76:0:0:67,76:2359,2635:-405.324,-213.291,-193.122,-192.382,0,-169.504	1/1:78:0,78,0:0:0:78,0:2758,0:-248.384,-23.4803,0,-248.384,-23.4803,-248.384	1/2:57:0,31,26:0:0:31,26:1112,899:-163.092,-72.3822,-63.0503,-91.0594,0,-83.2326	1/2:3:0,1,2:0:0:1,2:36,62:-8.07126,-5.11419,-4.81316,-3.29724,0,-2.69518	1/2:30:0,24,6:0:0:24,6:860,216:-86.7298,-16.5716,-9.34689,-70.4971,0,-68.6909	1/1:157:0,156,0:0:0:156,0:5555,0:-499.654,-46.9607,0,-499.654,-46.9607,-499.654	1/1:147:0,147,0:0:0:147,0:5252,0:-472.745,-44.2514,0,-472.745,-44.2514,-472.745	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:124:0,80,42:0:0:80,42:2847,1479:-351.917,-119.896,-95.8131,-232.113,0,-219.47	1/2:33:0,16,17:0:0:16,17:576,574:-93.7854,-46.7756,-41.9591,-47.3585,0,-42.241	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/2:8:0,6,2:0:0:6,2:212,70:-23.2964,-6.02773,-4.22155,-17.6186,0,-17.0166	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:2:0,1,1:0:0:1,1:36,36:-6.22607,-3.2882,-2.98717,-3.29724,0,-2.99621	1/2:11:0,8,3:0:0:8,3:284,100:-31.4121,-8.25152,-5.84328,-23.4951,0,-22.592	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:119:1,69,48:1:27:69,48:2427,1696:-332.142,-134.894,-116.25,-195.527,0,-183.206	1/1:62:0,62,0:0:0:62,0:2232,0:-200.723,-18.6639,0,-200.723,-18.6639,-200.723	1/1:37:0,37,0:0:0:37,0:1288,0:-116.215,-11.1381,0,-116.215,-11.1381,-116.215	2/2:1:0,0,1:0:0:0,1:0,34:-3.39568,-3.39568,-3.39568,-0.30103,-0.30103,0	1/1:61:0,60,0:0:0:60,0:2156,0:-194.026,-18.0618,0,-194.026,-18.0618,-194.026	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/2:65:0,39,26:0:0:39,26:1391,886:-185.001,-71.6004,-59.8602,-113.746,0,-105.919	1/2:37:0,20,17:0:0:20,17:696,590:-103.994,-47.3984,-41.3778,-56.9393,0,-51.8218	1/2:28:0,13,15:0:0:13,15:442,525:-78.1614,-42.3169,-38.4035,-36.1864,0,-31.671	1/2:76:0,48,28:0:0:48,28:1711,976:-218.473,-78.9969,-64.5475,-139.826,0,-131.397	1/2:51:0,17,34:0:0:17,34:608,1166:-142.896,-93.3199,-88.2024,-49.9263,0,-39.6913	1/1:122:0,121,0:0:0:121,0:4328,0:-389.332,-36.4246,0,-389.332,-36.4246,-389.332	1/1:46:0,46,0:0:0:46,0:1639,0:-147.77,-13.8474,0,-147.77,-13.8474,-147.77	1/2:40:0,25,15:0:0:25,15:896,519:-115.508,-42.4237,-34.8979,-73.4346,0,-68.9192	1/2:38:0,28,10:0:0:28,10:1004,350:-110.713,-28.8185,-20.3897,-82.247,0,-79.2367	1/2:8:0,7,1:0:0:7,1:252,36:-23.8568,-3.29465,-1.18744,-20.9217,0,-20.6207	1/1:53:0,53,0:0:0:53,0:1881,0:-169.522,-15.9546,0,-169.522,-15.9546,-169.522	1/1:33:0,33,0:0:0:33,0:1171,0:-105.697,-9.93399,0,-105.697,-9.93399,-105.697	1/2:5:0,3,2:0:0:3,2:100,72:-14.3039,-6.22607,-5.32298,-8.42677,0,-7.82471	1/2:61:0,30,31:0:0:30,31:1071,1056:-172.661,-85.3383,-76.3074,-87.6707,0,-78.3388	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/2:12:0,10,2:0:0:10,2:351,72:-34.7885,-6.23275,-3.22245,-28.914,0,-28.312	1/2:7:0,1,6:0:0:1,6:36,205:-19.8849,-16.9447,-16.6437,-3.29724,0,-1.49106	1/2:40:0,21,18:0:0:21,18:756,624:-112.118,-50.4249,-44.1032,-61.697,0,-56.2784	1/1:64:0,64,0:0:0:64,0:2296,0:-206.901,-19.2659,0,-206.901,-19.2659,-206.901	1/2:8:0,7,1:0:0:7,1:252,36:-23.8568,-3.29465,-1.18744,-20.9217,0,-20.6207	1/1:169:0,169,0:0:0:169,0:6014,0:-541.365,-50.8741,0,-541.365,-50.8741,-541.365	1/1:83:0,83,0:0:0:83,0:2950,0:-265.688,-24.9855,0,-265.688,-24.9855,-265.688	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:33:0,33,0:0:0:33,0:1176,0:-106.148,-9.93399,0,-106.148,-9.93399,-106.148	1/1:191:0,189,2:0:0:189,2:6708,72:-603.42,-56.8947,0,-597.55,-50.6649,-596.947	1/1:78:0,78,0:0:0:78,0:2792,0:-251.517,-23.4803,0,-251.517,-23.4803,-251.517	1/1:25:1,24,0:1:21:24,0:855,0:-75.1702,-5.4258,0,-75.4713,-7.22472,-77.0543	1/1:24:0,24,0:0:0:24,0:856,0:-77.3611,-7.22472,0,-77.3611,-7.22472,-77.3611	1/1:20:1,19,0:1:36:19,0:653,0:-55.4881,-2.42233,0,-55.7891,-5.71957,-58.7274	1/2:12:0,5,6:0:0:5,6:180,214:-32.1175,-17.4291,-15.9239,-14.6873,0,-12.8811	1/1:85:0,85,0:0:0:85,0:3040,0:-273.822,-25.5876,0,-273.822,-25.5876,-273.822	1/2:78:0,37,41:0:0:37,41:1300,1440:-221.015,-115.203,-104.065,-106.16,0,-93.8181	1/2:66:0,32,34:0:0:32,34:1140,1159:-186.738,-93.8095,-84.1765,-93.2762,0,-83.0412	1/1:108:0,106,1:0:0:106,1:3792,36:-341.119,-31.9092,0,-338.182,-28.9716,-337.88	1/1:66:0,66,0:0:0:66,0:2361,0:-212.732,-19.868,0,-212.732,-19.868,-212.732	1/1:68:0,68,0:0:0:68,0:2428,0:-218.768,-20.47,0,-218.768,-20.47,-218.768	1/2:8:0,7,1:0:0:7,1:252,36:-23.6291,-3.04512,-0.937906,-20.9217,0,-20.6207	1/1:49:0,49,0:0:0:49,0:1748,0:-157.604,-14.7505,0,-157.604,-14.7505,-157.604	1/1:72:0,71,0:0:0:71,0:2556,0:-229.962,-21.3731,0,-229.962,-21.3731,-229.962	1/1:119:0,118,1:0:0:118,1:4181,36:-376.115,-35.5215,0,-373.178,-32.2243,-372.877	1/1:32:0,32,0:0:0:32,0:1152,0:-103.99,-9.63296,0,-103.99,-9.63296,-103.99	1/1:33:0,33,0:0:0:33,0:1176,0:-106.147,-9.93399,0,-106.147,-9.93399,-106.147	1/2:28:0,10,18:0:0:10,18:360,633:-80.7016,-51.3233,-48.313,-29.734,0,-24.3155	1/1:75:0,74,1:0:0:74,1:2623,36:-235.908,-22.2762,0,-232.973,-18.9816,-232.672	1/2:14:0,7,7:0:0:7,7:252,250:-41.0981,-20.5332,-18.426,-20.9217,0,-18.8145	1/1:55:0,55,0:0:0:55,0:1972,0:-177.755,-16.5567,0,-177.755,-16.5567,-177.755	1/1:63:0,63,0:0:0:63,0:2244,0:-202.192,-18.9649,0,-202.192,-18.9649,-202.192	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/2:42:0,27,15:0:0:27,15:968,528:-122.102,-43.1477,-35.0199,-79.308,0,-74.7926	1/2:54:0,20,34:0:0:20,34:705,1198:-153.895,-96.4931,-90.4725,-57.7522,0,-47.5172	1/1:58:0,58,0:0:0:58,0:2063,0:-185.94,-17.4597,0,-185.94,-17.4597,-185.94	1/1:65:0,65,0:0:0:65,0:2315,0:-208.609,-19.567,0,-208.609,-19.567,-208.609
chr06	3063858	.	CCCA	TCCA	25483.6	PASS	AB=0.47541;ABP=20.3109;AC=45;AF=0.239362;AN=188;AO=1592;CIGAR=1X3M;DP=8415;DPB=8415;DPRA=0.999697;EPP=3459.99;EPPR=14745.1;GTI=4;LEN=1;MEANALT=1.32075;MQM=60;MQMR=59.9894;NS=94;NUMALT=1;ODDS=4.03206;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56488;QR=236749;RO=6789;RPL=0;RPP=3459.99;RPPR=14745.1;RPR=1592;RUN=1;SAF=0;SAP=3459.99;SAR=1592;SRF=0;SRP=14745.1;SRR=6789;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:22,17:22:778:17:608:-43.3119,0,-58.6025	0/0:104:104,0:104:3623:0:0:0,-31.3071,-326.246	0/1:44:34,10:34:1205:10:360:-19.499,0,-95.5108	0/0:136:135,1:135:4700:1:36:0,-37.3418,-419.57	0/1:47:27,16:27:943:16:572:-38.5098,0,-71.8804	0/1:57:25,32:25:874:32:1148:-86.4711,0,-61.8172	0/0:107:106,0:106:3692:0:0:0,-31.9092,-332.166	0/1:155:74,78:74:2584:78:2779:-204.296,0,-186.753	0/1:98:52,45:52:1813:45:1588:-113.729,0,-133.968	0/1:88:45,43:45:1571:43:1540:-112.402,0,-115.188	0/1:69:40,28:40:1392:28:996:-69.1252,0,-104.746	0/0:85:84,0:84:2858:0:0:0,-25.2865,-257.259	0/1:58:20,38:20:697:38:1347:-104.07,0,-45.5921	0/1:114:54,59:54:1900:59:2075:-152.645,0,-136.902	0/0:80:80,0:80:2799:0:0:0,-24.0824,-252.152	0/1:50:23,27:23:799:27:960:-71.6648,0,-57.1745	0/0:93:93,0:93:3177:0:0:0,-27.9958,-286.155	0/0:74:73,0:73:2504:0:0:0,-21.9752,-225.25	0/0:37:37,0:37:1287:0:0:0,-11.1381,-116.127	0/0:115:115,0:115:4044:0:0:0,-34.6184,-364.151	0/1:119:60,59:60:2110:59:2083:-151.916,0,-154.346	0/0:102:102,0:102:3569:0:0:0,-30.7051,-321.417	0/1:34:17,17:17:602:17:612:-45.1784,0,-44.2752	0/1:69:29,40:29:962:40:1432:-108.407,0,-66.1092	0/1:60:25,35:25:860:35:1219:-91.9478,0,-59.6493	0/0:243:239,2:239:8340:2:72:0,-66.0713,-743.789	0/0:80:80,0:80:2801:0:0:0,-24.0824,-252.331	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3823	0/1:275:181,94:181:6348:94:3346:-218.575,0,-488.635	0/1:161:85,75:85:2976:75:2676:-192.561,0,-219.55	0/0:128:124,4:124:4334:4:140:0,-25.5873,-377.296	0/0:3:3,0:3:101:0:0:0,-0.90309,-9.42313	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9193	1/1:6:0,5:0:0:5:180:-16.2838,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:230:117,113:117:3978:113:3968:-288.074,0,-288.982	0/0:258:258,0:258:9007:0:0:0,-77.6657,-810.627	0/0:87:87,0:87:2999:0:0:0,-26.1896,-270.142	0/1:4:1,3:1:30:3:108:-8.87105,0,-1.79545	0/0:127:125,0:125:4378:0:0:0,-37.6287,-393.84	0/0:29:29,0:29:1003:0:0:0,-8.72987,-90.5791	0/1:97:64,32:64:2285:32:1133:-73.0181,0,-176.654	0/1:65:31,34:31:1093:34:1203:-89.0081,0,-79.1117	0/1:75:29,45:29:987:45:1604:-122.092,0,-66.5778	0/1:96:50,45:50:1749:45:1616:-116.88,0,-128.842	0/1:66:33,33:33:1126:33:1165:-85.2865,0,-81.7723	0/0:118:117,0:117:4059:0:0:0,-35.2205,-365.142	0/0:82:81,0:81:2819:0:0:0,-24.3834,-253.591	0/1:93:52,41:52:1828:41:1441:-101.988,0,-136.802	0/1:150:90,58:90:3155:58:2056:-140.407,0,-239.274	0/1:10:4,6:4:136:6:212:-16.4145,0,-9.56492	0/0:146:145,0:145:5119:0:0:0,-43.6493,-460.498	0/0:56:56,0:56:1941:0:0:0,-16.8577,-174.961	0/1:14:3,11:3:106:11:362:-28.6814,0,-5.67474	0/1:87:47,40:47:1670:40:1403:-100.377,0,-124.398	0/0:34:34,0:34:1198:0:0:0,-10.235,-108.124	0/1:2:1,1:1:29:1:36:-2.99621,0,-2.2976	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0168	0/1:101:57,44:57:1983:44:1575:-111.637,0,-148.335	0/0:154:154,0:154:5334:0:0:0,-46.3586,-480.206	0/1:9:1,8:1:35:8:288:-23.5581,0,-0.789359	0/0:152:151,0:151:5281:0:0:0,-45.4555,-475.184	0/0:210:208,2:208:7266:2:68:0,-56.7586,-647.549	0/0:81:79,2:79:2764:2:72:0,-17.5467,-242.166	0/0:38:38,0:38:1332:0:0:0,-11.4391,-120.178	0/0:131:131,0:131:4551:0:0:0,-39.4349,-409.764	0/0:121:119,2:119:4184:2:72:0,-29.5879,-369.909	0/0:35:35,0:35:1227:0:0:0,-10.536,-110.732	0/0:55:55,0:55:1924:0:0:0,-16.5566,-173.433	0/0:101:101,0:101:3546:0:0:0,-30.404,-319.351	0/1:32:18,14:18:633:14:488:-34.6175,0,-47.6634	0/0:96:96,0:96:3318:0:0:0,-28.8989,-298.84	0/1:54:28,26:28:991:26:924:-67.222,0,-73.2487	0/1:271:143,127:143:5035:127:4518:-325.149,0,-371.665	0/0:180:179,0:179:6294:0:0:0,-53.8844,-566.203	0/0:104:103,0:103:3621:0:0:0,-31.0061,-325.738	0/0:123:123,0:123:4321:0:0:0,-37.0267,-389.072	0/1:5:2,3:2:66:3:108:-8.57002,0,-4.7628	0/0:103:102,1:102:3590:1:36:0,-27.4078,-319.709	0/0:102:101,0:101:3490:0:0:0,-30.404,-313.955	0/0:179:178,1:178:6195:1:36:0,-50.2861,-554.061	0/0:101:101,0:101:3494:0:0:0,-30.404,-314.673	0/0:74:74,0:74:2534:0:0:0,-22.2762,-228.31	0/1:84:39,45:39:1333:45:1595:-118.553,0,-94.9772	0/0:151:150,1:150:5187:1:36:0,-41.8573,-463.382	0/1:31:16,15:16:559:15:528:-38.5194,0,-41.3058	0/0:76:76,0:76:2640:0:0:0,-22.8783,-237.848	0/0:88:86,1:86:2992:1:36:0,-22.9512,-265.915	0/0:79:78,0:78:2735:0:0:0,-23.4803,-246.033	0/1:107:53,54:53:1842:54:1936:-142.306,0,-133.848	0/1:66:13,53:13:452:53:1880:-149.611,0,-21.1422	0/0:92:92,0:92:3217:0:0:0,-27.6948,-289.755	0/0:116:116,0:116:4051:0:0:0,-34.9195,-364.784
chr06	3063891	.	C	T	141267	PASS	AB=0.507969;ABP=4.87925;AC=142;AF=0.755319;AN=188;AO=6776;CIGAR=1X;DP=8484;DPB=8484;DPRA=21.4818;EPP=14716.9;EPPR=3703.2;GTI=4;LEN=1;MEANALT=1.04396;MQM=59.9861;MQMR=59.9935;NS=94;NUMALT=1;ODDS=4.09259;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237606;QR=60964;RO=1704;RPL=6776;RPP=14716.9;RPPR=3703.2;RPR=0;RUN=1;SAF=0;SAP=14716.9;SAR=6776;SRF=0;SRP=3703.2;SRR=1704;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:22,22:22:792:22:784:-57.6386,0,-58.3604	1/1:103:0,103:0:0:103:3559:-320.426,-31.0061,0	0/1:45:11,34:11:396:34:1182:-93.1342,0,-22.4364	1/1:136:2,134:2:57:134:4671:-415.136,-35.5268,0	0/1:48:21,27:21:748:27:972:-73.3485,0,-53.1959	0/1:54:30,24:30:1076:24:845:-60.1115,0,-80.8972	1/1:105:0,105:0:0:105:3719:-334.909,-31.6082,0	0/1:161:81,80:81:2897:80:2832:-206.651,0,-212.498	0/1:104:49,55:49:1764:55:1869:-137.17,0,-127.737	0/1:90:44,46:44:1584:46:1633:-120.164,0,-115.759	0/1:70:31,39:31:1104:39:1380:-103.427,0,-78.5985	1/1:84:1,83:1:36:83:2938:-261.074,-21.7078,0	0/1:59:39,20:39:1400:20:720:-47.368,0,-108.538	0/1:114:59,55:59:2089:55:1950:-141.455,0,-153.961	1/1:78:0,78:0:0:78:2742:-247.019,-23.4803,0	0/1:49:27,22:27:968:22:788:-56.4943,0,-72.6869	1/1:89:0,89:0:0:89:3151:-283.812,-26.7917,0	1/1:72:0,72:0:0:72:2554:-230.108,-21.6742,0	1/1:35:0,35:0:0:35:1221:-110.189,-10.5361,0	1/1:117:0,117:0:0:117:4156:-374.224,-35.2205,0	0/1:122:63,59:63:2264:59:2090:-151.641,0,-167.297	1/1:100:0,100:0:0:100:3502:-315.386,-30.103,0	0/1:35:18,17:18:633:17:612:-44.8774,0,-46.759	0/1:71:41,30:41:1457:30:1013:-70.0965,0,-110.051	0/1:57:33,24:33:1173:24:830:-57.8536,0,-88.7168	1/1:245:2,243:2:72:243:8450:-753.668,-66.9156,0	1/1:81:0,81:0:0:81:2821:-254.125,-24.3834,0	1/1:30:0,30:0:0:30:1065:-96.1598,-9.0309,0	0/1:279:101,178:101:3628:178:6172:-471.593,0,-242.737	0/1:172:85,87:85:3052:87:2964:-215.209,0,-223.132	1/1:127:5,122:5:180:122:4327:-373.052,-21.6787,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:227:113,114:113:4037:114:4024:-294.013,0,-295.183	1/1:260:0,259:0:0:259:9057:-814.746,-77.9668,0	1/1:92:0,92:0:0:92:3247:-292.428,-27.6948,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:125:0,125:0:0:125:4371:-393.562,-37.6288,0	1/1:28:1,27:1:36:27:934:-80.7705,-4.83057,0	0/1:101:36,65:36:1296:65:2188:-166.77,0,-86.5399	0/1:69:38,31:38:1368:31:1093:-77.9066,0,-102.65	0/1:76:47,29:47:1660:29:1040:-71.0361,0,-126.807	0/1:101:51,50:51:1832:50:1716:-124.313,0,-134.757	0/1:70:33,36:33:1169:36:1258:-92.3877,0,-84.3846	1/1:113:0,113:0:0:113:3892:-350.471,-34.0164,0	1/1:82:0,82:0:0:82:2910:-262.133,-24.6845,0	0/1:95:42,53:42:1512:53:1841:-137.365,0,-107.777	0/1:155:65,90:65:2336:90:3198:-241.382,0,-163.84	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	1/1:141:0,140:0:0:140:4866:-437.771,-42.1442,0	1/1:56:0,56:0:0:56:1946:-175.404,-16.8577,0	0/1:15:12,3:12:432:3:89:-3.78891,0,-34.7057	0/1:89:43,46:43:1544:46:1641:-121.185,0,-112.461	1/1:34:0,34:0:0:34:1197:-108.033,-10.235,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:102:46,56:46:1652:56:1980:-147.766,0,-118.263	1/1:154:1,153:1:36:153:5471:-488.918,-42.7603,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:153:0,153:0:0:153:5379:-484.24,-46.0576,0	1/1:209:2,207:2:72:207:7231:-644.01,-56.0785,0	1/1:81:2,79:2:72:79:2791:-244.59,-17.5467,0	1/1:37:0,37:0:0:37:1302:-117.477,-11.1381,0	1/1:130:0,130:0:0:130:4521:-407.055,-39.1339,0	1/1:120:3,117:3:108:117:4061:-355.601,-26.0484,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:55:0,55:0:0:55:1920:-173.07,-16.5567,0	1/1:100:1,99:1:36:99:3482:-309.991,-26.5047,0	0/1:32:14,18:14:500:18:610:-45.5827,0,-35.7032	1/1:94:2,92:2:68:92:3212:-282.842,-21.8391,0	0/1:55:27,28:27:953:28:974:-71.4115,0,-69.5267	0/1:283:139,144:139:4962:144:5093:-373.322,0,-361.535	1/1:180:0,180:0:0:180:6207:-558.726,-54.1854,0	1/1:102:0,102:0:0:102:3524:-317.366,-30.7051,0	1/1:124:0,124:0:0:124:4293:-386.545,-37.3277,0	0/1:6:4,2:4:129:2:72:-5.03054,0,-10.1215	1/1:104:1,103:1:36:103:3598:-320.423,-27.7088,0	1/1:100:0,100:0:0:100:3542:-318.986,-30.103,0	1/1:180:0,180:0:0:180:6291:-566.282,-54.1854,0	1/1:100:0,99:0:0:99:3514:-316.257,-29.802,0	1/1:72:0,72:0:0:72:2554:-230.108,-21.6742,0	0/1:89:47,42:47:1688:42:1440:-103.095,0,-125.415	1/1:151:1,150:1:36:150:5305:-473.982,-41.8573,0	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	1/1:77:0,77:0:0:77:2730:-245.941,-23.1793,0	1/1:85:0,85:0:0:85:3017:-271.761,-25.5876,0	1/1:80:0,80:0:0:80:2849:-256.647,-24.0824,0	0/1:109:55,54:55:1976:54:1944:-142.424,0,-145.302	0/1:73:61,12:61:2184:12:432:-17.246,0,-174.851	1/1:92:1,91:1:36:91:3147:-279.852,-24.0965,0	1/1:117:0,117:0:0:117:4156:-374.221,-35.2205,0
chr06	3091484	.	ATTGC	CTTGC,CTTGG	216115	PASS	AB=0.45779,0.53855;ABP=70.6538,59.4303;AC=145,43;AF=0.771277,0.228723;AN=188;AO=7712,2384;CIGAR=1X4M,1X3M1X;DP=10127;DPB=10127.6;DPRA=0,1.0625;EPP=16749.4,5179.8;EPPR=11.6962;GTI=0;LEN=1,5;MEANALT=1.85106,2.31481;MQM=59.9973,59.9849;MQMR=60;NS=94;NUMALT=2;ODDS=1.09523;PAIRED=0,0;PAIREDR=0;PAO=0,3;PQA=0,104;PQR=0;PRO=0;QA=274550,82971;QR=135;RO=4;RPL=0,0;RPP=16749.4,5179.8;RPPR=5.18177;RPR=7712,2384;RUN=1,1;SAF=0,0;SAP=16749.4,5179.8;SAR=7712,2384;SRF=1;SRP=5.18177;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:20:0,10,10:0:0:10,10:360,352:-58.3864,-29.0082,-25.9979,-29.734,0,-26.7237	1/1:158:0,157,1:0:0:157,1:5615,36:-505.112,-47.2617,0,-502.174,-43.9645,-501.873	1/2:179:0,73,106:0:0:73,106:2595,3696:-512.411,-300.94,-278.965,-211.824,0,-179.915	1/1:182:0,181,0:0:0:181,0:6440,0:-579.33,-54.4864,0,-579.33,-54.4864,-579.33	1/2:49:0,22,27:0:0:22,27:780,928:-139.253,-75.7022,-69.0796,-63.9004,0,-55.7726	1/2:59:0,21,38:0:0:21,38:752,1317:-168.72,-107.389,-101.067,-61.6846,0,-50.2455	1/1:58:0,58,0:0:0:58,0:2067,0:-186.3,-17.4597,0,-186.3,-17.4597,-186.3	1/2:262:0,122,140:0:0:122,140:4336,4889:-751.009,-397.671,-360.945,-353.331,0,-311.187	1/2:83:0,31,49:0:0:31,49:1095,1705:-227.823,-138.647,-129.315,-89.188,0,-74.4375	1/2:180:0,74,106:0:0:74,106:2597,3711:-513.64,-302.29,-280.014,-211.701,0,-179.791	1/2:119:0,54,65:0:0:54,65:1940,2264:-342.724,-184.458,-168.202,-158.621,0,-139.054	1/1:77:0,77,0:0:0:77,0:2751,0:-247.832,-23.1793,0,-247.832,-23.1793,-247.832	1/2:76:0,38,38:0:0:38,38:1347,1342:-219.378,-109.642,-98.2024,-110.09,0,-98.6512	1/2:125:0,58,65:0:0:58,65:2049,2268:-351.406,-184.539,-167.079,-166.94,0,-147.373	1/1:79:0,79,0:0:0:79,0:2782,0:-250.62,-23.7814,0,-250.62,-23.7814,-250.62	1/2:92:0,49,43:0:0:49,43:1743,1475:-262.112,-120.058,-105.307,-142.403,0,-129.459	1/1:131:0,131,0:0:0:131,0:4662,0:-419.741,-39.4349,0,-419.741,-39.4349,-419.741	1/1:68:0,68,0:0:0:68,0:2432,0:-219.136,-20.47,0,-219.136,-20.47,-219.136	1/1:146:0,145,0:0:0:145,0:5169,0:-465.041,-43.6494,0,-465.041,-43.6494,-465.041	1/1:141:0,140,0:0:0:140,0:5028,0:-452.305,-42.1442,0,-452.305,-42.1442,-452.305	1/2:219:0,119,100:0:0:119,100:4220,3431:-622.395,-278.584,-242.761,-343.839,0,-313.736	1/1:86:0,86,0:0:0:86,0:3077,0:-277.159,-25.8886,0,-277.159,-25.8886,-277.159	1/2:18:0,6,12:0:0:6,12:216,420:-52.1488,-34.521,-32.7148,-17.9843,0,-14.372	1/2:189:0,83,106:0:0:83,106:2949,3726:-543.944,-303.64,-278.654,-240.658,0,-208.749	1/2:66:0,33,33:0:0:33,33:1154,1151:-187.84,-93.9599,-84.0259,-94.2291,0,-84.2951	1/1:255:0,255,0:0:0:255,0:8966,0:-806.931,-76.7627,0,-806.931,-76.7627,-806.931	1/1:171:0,171,0:0:0:171,0:6116,0:-550.539,-51.4761,0,-550.539,-51.4761,-550.539	1/1:48:1,47,0:1:36:47,0:1684,0:-148.249,-10.8512,0,-148.55,-14.1484,-151.487	1/2:234:0,109,125:0:0:109,125:3912,4364:-674.42,-355.314,-322.502,-319.46,0,-281.831	1/2:151:0,74,77:0:0:74,77:2635,2671:-432.226,-217.457,-195.181,-215.121,0,-191.942	1/1:60:0,60,0:0:0:60,0:2128,0:-191.789,-18.0618,0,-191.789,-18.0618,-191.789	1/2:6:0,3,3:0:0:3,3:104,108:-17.6186,-9.17208,-8.26899,-8.79971,0,-7.89662	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/2:6:0,4,2:0:0:4,2:140,71:-17.5273,-6.14,-4.93588,-11.7405,0,-11.1384	1/1:11:0,11,0:0:0:11,0:380,0:-34.532,-3.31133,0,-34.532,-3.31133,-34.532	1/2:237:0,93,144:0:0:93,144:3315,5052:-681.703,-411.484,-383.488,-270.573,0,-227.225	1/1:179:0,179,0:0:0:179,0:6403,0:-576.358,-53.8844,0,-576.358,-53.8844,-576.358	1/1:113:0,112,0:0:0:112,0:3999,0:-359.75,-33.7154,0,-359.75,-33.7154,-359.75	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:120:0,119,0:0:0:119,0:4231,0:-380.669,-35.8226,0,-380.669,-35.8226,-380.669	1/1:68:0,68,0:0:0:68,0:2440,0:-219.855,-20.47,0,-219.855,-20.47,-219.855	1/2:145:0,70,74:0:0:70,74:2492,2562:-411.305,-208.195,-187.123,-203.102,0,-180.826	1/2:117:0,62,55:0:0:62,55:2224,1873:-333.702,-152.29,-133.627,-181.76,0,-165.204	1/2:71:0,37,33:0:0:37,33:1312,1122:-198.034,-91.1351,-79.997,-107.03,0,-97.0959	1/2:102:0,48,54:0:0:48,54:1703,1887:-292.604,-153.851,-139.401,-139.106,0,-122.85	1/2:102:0,48,53:0:0:48,53:1709,1831:-288.048,-148.755,-134.306,-139.285,0,-123.33	1/1:131:0,130,1:0:0:130,1:4629,36:-416.414,-39.1339,0,-413.477,-35.8367,-413.175	1/1:117:0,117,0:0:0:117,0:4152,0:-373.862,-35.2205,0,-373.862,-35.2205,-373.862	1/2:248:0,105,142:0:0:105,142:3747,4972:-710.14,-404.671,-373.063,-305.601,0,-262.855	1/2:206:0,107,99:0:0:107,99:3786,3461:-590.283,-281.905,-249.695,-308.729,0,-278.927	1/2:17:0,9,8:0:0:9,8:320,254:-46.8594,-20.7616,-18.0524,-26.4331,0,-24.0248	1/1:147:0,147,0:0:0:147,0:5251,0:-472.728,-44.2514,0,-472.728,-44.2514,-472.728	1/1:58:0,58,0:0:0:58,0:2061,0:-185.759,-17.4597,0,-185.759,-17.4597,-185.759	1/2:9:0,5,4:0:0:5,4:176,144:-26.4331,-12.1095,-10.6043,-14.6799,0,-13.4757	1/2:128:0,57,71:0:0:57,71:1986,2486:-364.124,-202.621,-185.462,-161.852,0,-140.479	1/1:2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chr06	3144397	.	A	G	25305	PASS	AB=0.507075;ABP=4.30089;AC=44;AF=0.234043;AN=188;AO=1522;CIGAR=1X;DP=7170;DPB=7170;DPRA=0.976857;EPP=3307.99;EPPR=12245.8;GTI=2;LEN=1;MEANALT=1.02;MQM=59.8771;MQMR=59.9901;NS=94;NUMALT=1;ODDS=1.0072;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54263;QR=201844;RO=5646;RPL=0;RPP=3307.99;RPPR=12263.1;RPR=1522;RUN=1;SAF=1522;SAP=3307.99;SAR=0;SRF=5644;SRP=12245.8;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:24,14:24:856:14:492:-33.1732,0,-65.922	0/0:122:122,0:122:4350:0:0:0,-36.7257,-391.673	0/1:136:71,65:71:2529:65:2328:-168.84,0,-186.92	0/0:121:121,0:121:4318:0:0:0,-36.4246,-388.794	0/1:39:29,10:29:1025:10:360:-21.0041,0,-80.8205	0/1:46:36,10:36:1292:10:356:-18.5339,0,-102.736	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:138:64,74:64:2296:74:2614:-193.833,0,-165.359	0/1:92:44,48:44:1576:48:1706:-126.124,0,-114.437	0/1:68:34,34:34:1220:34:1220:-89.6322,0,-89.6368	0/1:89:38,51:38:1348:51:1828:-138.009,0,-94.7716	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/1:101:45,56:45:1608:56:2012:-150.949,0,-114.606	0/1:115:54,61:54:1936:61:2170:-160.947,0,-139.898	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/1:81:38,43:38:1368:43:1531:-113.699,0,-99.0374	0/0:99:99,0:99:3528:0:0:0,-29.802,-317.728	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:112:109,3:109:3924:3:104:0,-24.0126,-343.648	0/1:120:52,68:52:1864:68:2440:-183.704,0,-131.916	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:68:35,33:35:1233:33:1188:-86.7586,0,-90.8021	0/1:94:45,49:45:1612:49:1724:-127.088,0,-117.073	0/1:48:33,15:33:1188:15:540:-34.4871,0,-92.7792	0/0:151:151,0:151:5393:0:0:0,-45.4555,-485.501	0/0:153:153,0:153:5496:0:0:0,-46.0576,-494.764	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:149:75,74:75:2681:74:2648:-193.712,0,-196.68	0/1:78:47,31:47:1688:31:1104:-76.1903,0,-128.727	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:15:5,10:5:180:10:352:-27.4975,0,-12.0366	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9338	0/1:14:9,5:9:320:5:176:-11.9706,0,-24.9279	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:178:96,82:96:3429:82:2948:-211.97,0,-255.239	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.957	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:94:46,48:46:1656:48:1724:-127.149,0,-121.032	0/1:69:27,42:27:964:42:1493:-113.893,0,-66.3058	0/1:62:29,33:29:1040:33:1176:-87.4833,0,-75.2505	0/1:50:28,22:28:1004:22:780:-55.4715,0,-75.6244	0/1:99:54,44:54:1936:44:1576:-112.271,0,-144.656	0/0:124:124,0:124:4399:0:0:0,-37.3277,-396.081	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:74:31,43:31:1112:43:1536:-116.257,0,-78.1151	0/1:73:29,44:29:1044:44:1554:-118.015,0,-72.2996	0/1:3:1,2:1:32:2:68:-5.55462,0,-2.29622	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/1:93:41,52:41:1457:52:1848:-138.604,0,-103.428	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.525	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:7:4,3:4:140:3:104:-7.5956,0,-10.8374	0/1:78:32,46:32:1129:46:1636:-123.977,0,-78.436	0/0:99:98,1:98:3486:1:36:0,-26.2037,-310.351	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:129:127,2:127:4541:2:72:0,-31.9961,-402.019	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:103:102,1:102:3653:1:36:0,-27.4078,-325.374	0/0:72:70,2:70:2497:2:72:0,-14.8374,-218.145	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:54:54,0:54:1910:0:0:0,-16.2556,-172.174	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/1:20:5,15:5:176:15:526:-41.649,0,-10.1644	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:68:44,24:44:1568:24:860:-57.2514,0,-120.942	0/1:159:75,84:75:2673:84:2988:-221.29,0,-192.95	0/0:113:113,0:113:4026:0:0:0,-34.0164,-362.037	0/0:116:116,0:116:4118:0:0:0,-34.9195,-370.804	0/0:125:123,2:123:4369:2:72:0,-30.792,-386.546	0/1:21:6,15:6:201:15:536:-42.2523,0,-12.0954	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/0:120:120,0:120:4285:0:0:0,-36.1236,-385.827	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/1:92:38,54:38:1368:54:1934:-146.642,0,-95.7261	0/0:159:158,1:158:5667:1:36:0,-44.2655,-506.549	0/1:31:13,18:13:464:18:630:-47.6933,0,-32.7656	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:69:68,0:68:2427:0:0:0,-20.47,-218.326	0/1:88:54,34:54:1940:34:1202:-81.9928,0,-148.386	0/1:64:24,40:24:851:40:1427:-109.461,0,-57.6435	0/0:64:64,0:64:2262:0:0:0,-19.2659,-203.84	0/0:128:128,0:128:4569:0:0:0,-38.5318,-411.375
chr06	3191044	.	A	G	68803.3	PASS	AB=0.434377;ABP=59.1547;AC=138;AF=0.741935;AN=186;AO=2593;CIGAR=1X;DP=3462;DPB=3462;DPRA=15.0743;EPP=54.1015;EPPR=1874.83;GTI=1;LEN=1;MEANALT=1.03409;MQM=47.9429;MQMR=59.8487;NS=93;NUMALT=1;ODDS=1.63308;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92665;QR=30974;RO=866;RPL=1173;RPP=54.1015;RPPR=1874.83;RPR=1420;RUN=1;SAF=2593;SAP=5633.64;SAR=0;SRF=866;SRP=1883.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:212:5:180:-12.8853,0,-16.1135	1/1:40:0,40:0:0:40:1425:-126.013,-12.0412,0	0/1:40:30,10:30:1080:10:360:-20.3707,0,-85.4721	1/1:46:0,46:0:0:46:1640:-145.352,-13.8474,0	0/1:8:6,2:6:216:2:72:-4.39859,0,-17.3823	0/1:28:12,16:12:419:16:568:-42.0538,0,-29.6138	1/1:52:0,52:0:0:52:1859:-164.534,-15.6536,0	0/1:54:29,25:29:1036:25:900:-63.6141,0,-77.2725	0/1:26:16,10:16:576:10:360:-24.5123,0,-44.3482	0/1:35:27,8:27:968:8:284:-14.0753,0,-76.9013	0/1:37:13,24:13:468:24:847:-63.7319,0,-31.3038	1/1:39:0,39:0:0:39:1377:-123.07,-11.7402,0	0/1:39:19,20:19:669:20:716:-52.3271,0,-48.7761	0/1:58:28,30:28:1004:30:1080:-78.7537,0,-73.1985	1/1:24:0,24:0:0:24:860:-76.6078,-7.22472,0	0/1:23:12,11:12:432:11:396:-28.3078,0,-32.2975	1/1:49:0,49:0:0:49:1728:-152.7,-14.7505,0	1/1:32:0,32:0:0:32:1144:-102.241,-9.63296,0	1/1:15:0,15:0:0:15:525:-46.9518,-4.51545,0	1/1:46:0,46:0:0:46:1642:-145.311,-13.8474,0	0/1:47:28,19:28:1000:19:684:-47.3093,0,-76.1666	1/1:52:0,51:0:0:51:1832:-160.608,-15.3525,0	0/1:17:10,7:10:360:7:248:-17.2853,0,-27.6268	0/1:65:44,21:44:1584:21:756:-47.3302,0,-123.285	0/1:34:20,14:20:716:14:500:-34.4573,0,-54.023	1/1:95:0,95:0:0:95:3404:-299.346,-28.5979,0	1/1:59:0,59:0:0:59:2103:-185.077,-17.7608,0	1/1:17:0,17:0:0:17:612:-54.1416,-5.11751,0	0/1:95:63,32:63:2226:32:1140:-72.4796,0,-172.003	0/1:68:39,29:39:1385:29:1040:-72.2276,0,-104.477	1/1:51:1,50:1:36:50:1787:-153.965,-11.7543,0	0/1:8:1,7:1:36:7:252:-20.009,0,-1.19003	1/1:4:0,4:0:0:4:144:-13.3027,-1.20412,0	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:2:0,2:0:0:2:72:-6.81432,-0.60206,0	0/1:114:58,56:58:2084:56:2003:-141.799,0,-153.495	1/1:76:0,75:0:0:75:2688:-237.379,-22.5773,0	1/1:29:0,29:0:0:29:1040:-90.7745,-8.72987,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:37:0,37:0:0:37:1311:-116.913,-11.1381,0	1/1:12:0,12:0:0:12:423:-37.9603,-3.61236,0	0/1:42:26,16:26:921:16:572:-38.3799,0,-70.5619	0/1:41:22,19:22:792:19:675:-47.9896,0,-59.2458	0/1:33:14,19:14:489:19:680:-50.6372,0,-34.4049	0/1:34:22,12:22:792:12:432:-28.0704,0,-61.3707	0/1:54:34,20:34:1205:20:711:-47.2587,0,-92.4983	1/1:77:1,76:1:36:76:2728:-236.555,-19.581,0	1/1:46:0,46:0:0:46:1628:-143.835,-13.8474,0	0/1:47:26,21:26:928:21:752:-53.0143,0,-69.6898	0/1:71:45,26:45:1616:26:924:-61.1103,0,-124.35	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:29:0,29:0:0:29:1044:-93.0373,-8.72987,0	1/1:9:0,9:0:0:9:324:-28.8098,-2.70927,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:43:27,16:27:968:16:572:-38.0479,0,-74.4931	1/1:7:0,7:0:0:7:248:-21.1966,-2.10721,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:12:5,7:5:180:7:252:-18.8803,0,-12.9397	0/1:31:19,12:19:680:12:428:-28.9608,0,-52.1972	1/1:72:0,72:0:0:72:2584:-228.36,-21.6742,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	1/1:57:0,56:0:0:56:2004:-176.483,-16.8577,0	1/1:60:0,60:0:0:60:2147:-189.485,-18.0618,0	1/1:14:0,14:0:0:14:496:-44.3798,-4.21442,0	1/1:23:0,23:0:0:23:828:-73.0729,-6.92369,0	1/1:36:1,35:1:36:35:1247:-106.813,-7.23881,0	1/1:21:0,21:0:0:21:752:-66.8965,-6.32163,0	1/1:8:0,8:0:0:8:288:-25.5864,-2.40824,0	1/1:22:0,22:0:0:22:781:-69.7097,-6.62266,0	1/1:50:0,50:0:0:50:1770:-156.302,-15.0515,0	0/1:12:6,6:6:216:6:216:-15.6392,0,-16.1782	1/1:68:0,68:0:0:68:2436:-214.582,-20.47,0	0/1:35:17,18:17:612:18:644:-46.9529,0,-44.8728	0/1:45:18,27:18:648:27:961:-72.3236,0,-45.1055	1/1:33:0,33:0:0:33:1184:-104.911,-9.93399,0	1/1:53:0,53:0:0:53:1898:-168.382,-15.9546,0	1/1:31:0,31:0:0:31:1103:-98.1233,-9.33193,0	0/1:6:4,2:4:144:2:72:-4.88374,0,-11.5074	1/1:19:0,19:0:0:19:680:-60.3191,-5.71957,0	1/1:58:0,58:0:0:58:2068:-182.868,-17.4597,0	1/1:66:0,66:0:0:66:2360:-207.695,-19.868,0	1/1:48:0,48:0:0:48:1715:-151.614,-14.4494,0	1/1:33:0,33:0:0:33:1184:-105.614,-9.93399,0	0/1:45:27,18:27:972:18:648:-44.0607,0,-74.2516	1/1:68:1,67:1:36:67:2404:-209.095,-16.8718,0	0/1:30:14,16:14:504:16:576:-42.6385,0,-36.6672	1/1:50:0,50:0:0:50:1777:-158.128,-15.0515,0	1/1:41:0,41:0:0:41:1472:-130.499,-12.3422,0	1/1:22:0,22:0:0:22:788:-69.6102,-6.62266,0	0/1:64:30,34:30:1076:34:1207:-87.4825,0,-77.8869	0/1:41:27,14:27:972:14:504:-32.9691,0,-75.4557	1/1:8:0,8:0:0:8:288:-26.0528,-2.40824,0	1/1:42:0,42:0:0:42:1503:-132.463,-12.6433,0
chr06	3191053	.	T	C	14716	PASS	AB=0.565013;ABP=57.7861;AC=47;AF=0.252688;AN=186;AO=859;CIGAR=1X;DP=3464;DPB=3464;DPRA=0.984391;EPP=1859.63;EPPR=5659.7;GTI=1;LEN=1;MEANALT=1;MQM=59.8417;MQMR=47.9528;NS=93;NUMALT=1;ODDS=2.50461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30671;QR=93241;RO=2605;RPL=858;RPP=1859.63;RPPR=5659.7;RPR=1;RUN=1;SAF=859;SAP=1868.31;SAR=0;SRF=2605;SRP=5659.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.5595	0/0:41:41,0:41:1476:0:0:0,-12.3422,-130.716	0/1:43:12,31:12:432:31:1112:-87.4471,0,-25.8749	0/0:46:46,0:46:1648:0:0:0,-13.8474,-145.985	0/1:8:2,6:2:72:6:207:-16.5587,0,-4.39859	0/1:27:16,11:16:576:11:396:-27.8549,0,-42.9968	0/0:51:51,0:51:1832:0:0:0,-15.3525,-162.05	0/1:56:26,30:26:936:30:1062:-79.0065,0,-66.1809	0/1:26:10,16:10:356:16:572:-43.9866,0,-24.1557	0/1:35:9,26:9:320:26:932:-73.6628,0,-17.3163	0/1:37:24,13:24:864:13:468:-31.3038,0,-65.2658	0/0:42:42,0:42:1480:0:0:0,-12.6433,-132.17	0/1:38:19,19:19:684:19:684:-50.4335,0,-49.7505	0/1:56:28,28:28:999:28:989:-72.4467,0,-72.141	0/0:24:24,0:24:856:0:0:0,-7.22472,-76.2204	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.2459	0/0:49:49,0:49:1737:0:0:0,-14.7505,-153.359	0/0:33:33,0:33:1180:0:0:0,-9.93399,-105.414	0/0:15:15,0:15:532:0:0:0,-4.51545,-47.4625	0/0:45:45,0:45:1597:0:0:0,-13.5463,-141.132	0/1:48:20,28:20:720:28:995:-75.4145,0,-50.2469	0/0:55:55,0:55:1965:0:0:0,-16.5566,-172.89	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.2242	0/1:64:21,43:21:756:43:1536:-119.267,0,-47.7177	0/1:32:14,18:14:504:18:648:-48.5089,0,-35.3715	0/0:93:93,0:93:3320:0:0:0,-27.9958,-292.094	0/0:59:59,0:59:2116:0:0:0,-17.7608,-186.815	0/0:17:17,0:17:599:0:0:0,-5.11751,-53.3512	0/1:94:32,62:32:1139:62:2213:-171.136,0,-72.7426	0/1:71:29,42:29:1029:42:1503:-114.191,0,-70.4146	0/0:51:50,1:50:1792:1:36:0,-11.7543,-154.445	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.009	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9337	.:.:.:.:.:.:.:.	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.98442	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81432	0/1:111:55,56:55:1980:56:2001:-146.93,0,-141.039	0/0:77:77,0:77:2755:0:0:0,-23.1793,-243.466	0/0:31:31,0:31:1107:0:0:0,-9.33193,-96.6908	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:38:38,0:38:1368:0:0:0,-11.4391,-121.796	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.7764	0/1:43:16,27:16:568:27:968:-74.4931,0,-37.7174	0/1:40:19,21:19:684:21:728:-53.7789,0,-49.104	0/1:31:18,13:18:648:13:464:-32.7656,0,-48.3617	0/1:33:12,21:12:432:21:741:-57.0776,0,-28.3714	0/1:54:20,34:20:720:34:1220:-93.8512,0,-48.0328	0/0:79:78,1:78:2788:1:36:0,-20.1831,-241.954	0/0:44:44,0:44:1567:0:0:0,-13.2453,-137.808	0/1:43:19,24:19:684:24:860:-64.7775,0,-48.0592	0/1:71:26,45:26:920:45:1620:-124.699,0,-60.7208	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:28:28,0:28:1004:0:0:0,-8.42884,-89.4593	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.8098	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:42:16,26:16:567:26:919:-70.3829,0,-37.8559	0/0:7:7,0:7:252:0:0:0,-2.10721,-21.5003	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-18.8803	0/1:30:11,19:11:392:19:680:-52.4983,0,-26.0226	0/0:74:74,0:74:2664:0:0:0,-22.2762,-235.45	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:58:58,0:58:2076:0:0:0,-17.4597,-183.214	0/0:61:61,0:61:2173:0:0:0,-18.3628,-192.008	0/0:14:14,0:14:489:0:0:0,-4.21442,-43.5582	0/0:23:23,0:23:828:0:0:0,-6.92369,-73.0729	0/0:35:34,1:34:1216:1:36:0,-6.93777,-104.146	0/0:20:20,0:20:701:0:0:0,-6.0206,-62.4043	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.5864	0/0:22:22,0:22:788:0:0:0,-6.62266,-69.8271	0/0:51:51,0:51:1832:0:0:0,-15.3525,-161.85	0/1:13:6,7:6:216:7:224:-16.5589,0,-15.3382	0/0:64:64,0:64:2295:0:0:0,-19.2659,-202.024	0/1:34:18,16:18:648:16:576:-41.94,0,-47.6152	0/1:44:26,18:26:936:18:648:-45.4066,0,-70.4007	0/0:33:33,0:33:1179:0:0:0,-9.93399,-104.491	0/0:52:52,0:52:1853:0:0:0,-15.6536,-164.507	0/0:31:31,0:31:1116:0:0:0,-9.33193,-99.2795	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.54726	0/0:20:20,0:20:716:0:0:0,-6.0206,-63.5084	0/0:59:59,0:59:2124:0:0:0,-17.7608,-187.787	0/0:66:66,0:66:2368:0:0:0,-19.868,-208.233	0/0:49:49,0:49:1760:0:0:0,-14.7505,-155.557	0/0:34:34,0:34:1215:0:0:0,-10.235,-108.401	0/1:45:18,27:18:648:27:968:-73.891,0,-44.0607	0/0:68:67,1:67:2408:1:36:0,-16.8718,-209.299	0/1:30:16,14:16:576:14:504:-36.6672,0,-42.5502	0/0:51:51,0:51:1827:0:0:0,-15.3525,-162.528	0/0:43:43,0:43:1536:0:0:0,-12.9443,-136.204	0/0:22:22,0:22:792:0:0:0,-6.62266,-69.9215	0/1:62:32,30:32:1144:30:1065:-77.4959,0,-82.3688	0/1:43:15,28:15:536:28:1008:-78.0921,0,-35.244	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.0528	0/0:42:42,0:42:1512:0:0:0,-12.6433,-133.183
chr06	3191237	.	A	T	63916.9	PASS	AB=0.428896;ABP=80.21;AC=144;AF=0.765957;AN=188;AO=3022;CIGAR=1X;DP=4034;DPB=4034;DPRA=21.6774;EPP=6565.2;EPPR=2196.2;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.8905;MQMR=59.9861;NS=94;NUMALT=1;ODDS=0.840427;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107816;QR=35956;RO=1010;RPL=3022;RPP=6565.2;RPPR=2196.2;RPR=0;RUN=1;SAF=0;SAP=6565.2;SAR=3022;SRF=0;SRP=2196.2;SRR=1010;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:8,15:8:288:15:525:-40.6544,0,-19.3437	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:109:71,38:71:2548:38:1348:-88.8041,0,-196.758	1/1:123:0,123:0:0:123:4364:-392.13,-37.0267,0	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	0/1:40:19,21:19:684:21:737:-54.6094,0,-49.8491	1/1:30:0,30:0:0:30:1065:-96.1598,-9.0309,0	0/1:51:34,17:34:1197:17:604:-39.3381,0,-92.6809	0/1:38:24,14:24:860:14:496:-33.5351,0,-66.2827	0/1:38:26,12:26:920:12:432:-27.7821,0,-71.6779	0/1:34:16,18:16:572:18:648:-48.4169,0,-41.5784	1/1:51:0,51:0:0:51:1828:-164.607,-15.3525,0	0/1:31:19,12:19:684:12:428:-29.5269,0,-52.5584	0/1:38:19,19:19:676:19:684:-50.4512,0,-49.7289	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:26:11,15:11:392:15:536:-40.748,0,-27.7933	1/1:16:0,16:0:0:16:576:-52.1668,-4.81648,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:63:0,63:0:0:63:2226:-200.601,-18.9649,0	0/1:71:47,24:47:1673:24:860:-56.3487,0,-129.482	1/1:51:0,51:0:0:51:1832:-165.137,-15.3525,0	0/1:48:34,14:34:1204:14:504:-31.2487,0,-94.2164	0/1:29:16,13:16:557:13:468:-33.7298,0,-41.7257	0/1:41:28,13:28:1008:13:445:-28.0331,0,-78.6941	1/1:144:0,144:0:0:144:5142:-462.919,-43.3483,0	1/1:109:0,109:0:0:109:3897:-350.922,-32.8123,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:170:110,60:110:3891:60:2137:-141.421,0,-299.208	0/1:85:49,36:49:1756:36:1292:-90.9962,0,-132.736	1/1:59:0,59:0:0:59:2071:-186.656,-17.7608,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:77:29,48:29:1040:48:1724:-132.266,0,-70.7351	1/1:49:0,49:0:0:49:1743:-156.882,-14.7505,0	1/1:24:0,24:0:0:24:860:-77.7195,-7.22472,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:78:0,78:0:0:78:2731:-245.949,-23.4803,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:110:56,54:56:1947:54:1909:-138.969,0,-142.383	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	0/1:25:16,9:16:568:9:324:-21.9801,0,-43.9261	0/1:68:40,28:40:1428:28:1004:-70.2058,0,-108.347	0/1:50:23,27:23:824:27:972:-72.7382,0,-59.4318	1/1:49:0,49:0:0:49:1729:-155.889,-14.7505,0	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:42:27,15:27:972:15:540:-36.2933,0,-75.1546	0/1:76:45,31:45:1578:31:1116:-77.8734,0,-119.428	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:70:1,69:1:32:69:2472:-219.534,-17.8728,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:82:42,40:42:1477:40:1426:-103.946,0,-108.537	1/1:24:0,24:0:0:24:849:-76.7278,-7.22472,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:8:1,7:1:36:7:252:-20.6183,0,-1.19003	0/1:48:22,26:22:784:26:936:-70.11,0,-56.4299	1/1:55:0,55:0:0:55:1972:-177.754,-16.5567,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:55:1,54:1:36:54:1913:-168.847,-12.9584,0	1/1:61:2,59:2:72:59:2108:-183.152,-11.5261,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:69:0,68:0:0:68:2414:-217.154,-20.47,0	1/1:38:0,38:0:0:38:1360:-122.698,-11.4391,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:30:0,29:0:0:29:1029:-92.5614,-8.72987,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:106:0,106:0:0:106:3808:-342.916,-31.9092,0	0/1:34:16,18:16:572:18:625:-46.3375,0,-41.5784	0/1:64:35,29:35:1256:29:1040:-74.6484,0,-94.0794	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:35:0,35:0:0:35:1237:-111.632,-10.5361,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:41:0,41:0:0:41:1465:-132.145,-12.3422,0	1/1:43:0,43:0:0:43:1532:-138.173,-12.9443,0	1/1:63:0,63:0:0:63:2252:-202.942,-18.9649,0	1/1:35:0,35:0:0:35:1245:-112.353,-10.5361,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	1/1:52:0,52:0:0:52:1855:-167.228,-15.6536,0	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	1/1:37:0,37:0:0:37:1317:-118.812,-11.1381,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:49:27,22:27:972:22:788:-56.4943,0,-73.0474	0/1:24:19,5:19:680:5:180:-9.32734,0,-54.3044	1/1:45:0,45:0:0:45:1612:-144.265,-13.5464,0	1/1:35:0,35:0:0:35:1256:-113.341,-10.5361,0
chr06	3218319	.	C	T	81503.4	PASS	AB=0.411899;ABP=945.777;AC=94;AF=0.5;AN=188;AO=5760;CIGAR=1X;DP=13984;DPB=13984;DPRA=0;EPP=11357.3;EPPR=356.597;GTI=0;LEN=1;MEANALT=1.03191;MQM=37.5983;MQMR=57.781;NS=94;NUMALT=1;ODDS=97.1858;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206062;QR=293311;RO=8221;RPL=136;RPP=11357.3;RPPR=356.597;RPR=5624;RUN=1;SAF=5760;SAP=12510.7;SAR=0;SRF=8221;SRP=17854.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:38,16:38:1350:16:567:-32.9287,0,-105.398	0/1:230:155,75:155:5528:75:2688:-166.333,0,-428.36	0/1:293:110,183:110:3911:183:6542:-484.691,0,-262.659	0/1:296:167,128:167:5972:128:4577:-284.735,0,-448.355	0/1:107:75,32:75:2684:32:1152:-67.0024,0,-208.79	0/1:72:41,31:41:1450:31:1116:-76.4316,0,-109.009	0/1:214:159,55:159:5666:55:1953:-98.0282,0,-445.58	0/1:308:156,152:156:5550:152:5464:-382.991,0,-406.216	0/1:146:105,41:105:3760:41:1472:-84.8071,0,-294.164	0/1:170:126,44:126:4499:44:1584:-78.4645,0,-351.663	0/1:84:47,37:47:1679:37:1319:-83.4473,0,-125.242	0/1:96:64,32:64:2288:32:1148:-69.5985,0,-177.273	0/1:101:63,38:63:2234:38:1355:-88.3191,0,-170.588	0/1:139:92,47:92:3257:47:1691:-102.825,0,-250.084	0/1:92:56,36:56:2012:36:1292:-76.5422,0,-153.634	0/1:51:42,9:42:1504:9:324:-12.8816,0,-119.303	0/1:62:50,12:50:1792:12:421:-16.6882,0,-142.804	0/1:70:50,20:50:1772:20:720:-40.9446,0,-138.685	0/1:49:38,11:38:1325:11:396:-20.4915,0,-104.795	0/1:261:186,75:186:6651:75:2651:-140.869,0,-519.709	0/1:245:177,68:177:6284:68:2436:-134.304,0,-490.492	0/1:153:73,79:73:2587:79:2827:-175.043,0,-187.101	0/1:130:55,75:55:1971:75:2666:-180.307,0,-137.581	0/1:227:175,52:175:6236:52:1868:-91.7731,0,-490.94	0/1:103:71,32:71:2532:32:1148:-67.6108,0,-196.952	0/1:411:176,235:176:6292:235:8423:-536.773,0,-442.486	0/1:242:156,86:156:5547:86:3096:-192.861,0,-426.479	0/1:46:29,17:29:1031:17:608:-38.9368,0,-79.249	0/1:468:273,195:273:9703:195:6950:-406.747,0,-726.921	0/1:235:124,111:124:4436:111:3992:-270.08,0,-326.995	0/1:180:98,82:98:3494:82:2944:-188.196,0,-260.458	0/1:12:2,10:2:72:10:360:-26.9236,0,-3.17547	0/1:23:13,10:13:459:10:360:-23.6828,0,-34.7009	0/1:9:3,6:3:104:6:216:-15.3059,0,-6.91951	0/1:16:13,3:13:464:3:108:-4.99108,0,-37.0503	0/1:5:2,3:2:72:3:108:-8.30241,0,-5.32298	0/1:303:166,137:166:5935:137:4928:-291.855,0,-439.219	0/1:183:121,62:121:4327:62:2224:-135.919,0,-334.481	0/1:82:64,18:64:2300:18:648:-31.7923,0,-182.473	0/1:13:6,7:6:216:7:252:-18.1423,0,-15.8473	0/1:240:112,128:112:3994:128:4579:-319.433,0,-287.397	0/1:26:15,11:15:536:11:396:-26.4092,0,-40.748	0/1:189:105,84:105:3745:84:3007:-200.435,0,-279.796	0/1:106:92,14:92:3281:14:504:-9.84158,0,-262.251	0/1:77:42,35:42:1496:35:1250:-78.7322,0,-111.256	0/1:108:55,53:55:1960:53:1881:-115.601,0,-142.117	0/1:187:106,81:106:3779:81:2884:-195.165,0,-283.336	0/1:301:127,174:127:4532:174:6190:-421.476,0,-317.394	0/1:160:105,55:105:3739:55:1959:-109.597,0,-288.539	0/1:236:168,67:168:6008:67:2400:-128,0,-466.69	0/1:253:191,62:191:6808:62:2216:-98.1951,0,-533.436	0/1:12:7,5:7:244:5:180:-10.244,0,-18.4742	0/1:200:123,77:123:4397:77:2772:-183.16,0,-335.448	0/1:92:44,48:44:1576:48:1724:-106.649,0,-114.436	0/1:18:8,10:8:279:10:356:-26.0407,0,-19.8481	0/1:228:98,130:98:3492:130:4668:-329.128,0,-244.781	0/1:38:24,14:24:860:14:495:-29.9815,0,-66.2653	0/1:19:12,7:12:424:7:252:-12.8414,0,-32.3763	0/1:16:10,6:10:360:6:212:-11.9783,0,-27.761	0/1:103:63,40:63:2264:40:1432:-91.3912,0,-172.217	0/1:172:93,79:93:3319:79:2832:-180.825,0,-247.139	0/1:10:7,3:7:252:3:108:-5.77059,0,-19.7898	0/1:288:179,109:179:6404:109:3903:-218.808,0,-489.614	0/1:363:209,154:209:7431:154:5479:-342.396,0,-559.35	0/1:176:138,38:138:4935:38:1364:-61.8599,0,-391.296	0/1:148:66,82:66:2359:82:2944:-196.935,0,-167.999	0/1:227:136,91:136:4855:91:3257:-199.107,0,-368.71	0/1:276:105,171:105:3754:171:6120:-420.968,0,-254.883	0/1:24:16,8:16:572:8:284:-15.2923,0,-44.5749	0/1:128:109,19:109:3908:19:675:-21.0382,0,-313.314	0/1:90:61,29:61:2167:29:1036:-54.308,0,-167.93	0/1:36:19,17:19:669:17:593:-38.9832,0,-49.3867	0/1:346:200,146:200:7102:146:5207:-352.423,0,-534.924	0/1:162:86,76:86:3062:76:2723:-184.578,0,-226.626	0/1:261:104,157:104:3720:157:5572:-399.275,0,-254.831	0/1:384:179,205:179:6392:205:7359:-489.318,0,-459.583	0/1:118:73,45:73:2601:45:1620:-105.972,0,-198.806	0/1:151:96,55:96:3440:55:1955:-124.515,0,-264.275	0/1:20:4,16:4:140:16:570:-40.102,0,-6.88729	0/1:221:125,96:125:4459:96:3452:-225.719,0,-334.927	0/1:120:90,30:90:3199:30:1080:-58.3029,0,-251.996	0/1:350:166,184:166:5944:184:6570:-434.658,0,-429.601	0/1:118:78,40:78:2804:40:1440:-82.9334,0,-217.069	0/1:72:45,27:45:1611:27:968:-58.1558,0,-123.589	0/1:91:72,19:72:2571:19:684:-28.4842,0,-203.231	0/1:179:128,51:128:4571:51:1811:-96.377,0,-357.623	0/1:49:37,12:37:1332:12:432:-22.6609,0,-104.965	0/1:87:64,23:64:2287:23:828:-46.065,0,-178.576	0/1:77:49,28:49:1760:28:1004:-65.1335,0,-134.969	0/1:34:25,9:25:887:9:324:-17.2896,0,-69.8945	0/1:120:78,42:78:2787:42:1485:-89.8311,0,-213.806	0/1:75:57,18:57:2035:18:648:-31.3097,0,-158.634	0/1:288:134,154:134:4782:154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chr06	3218331	.	T	G	143944	PASS	AB=0.584825;ABP=876.091;AC=94;AF=0.5;AN=188;AO=8170;CIGAR=1X;DP=13970;DPB=13970;DPRA=0;EPP=17743.9;EPPR=12582.3;GTI=0;LEN=1;MEANALT=1.06383;MQM=57.7704;MQMR=37.6603;NS=94;NUMALT=1;ODDS=89.3601;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=290911;QR=207050;RO=5793;RPL=8170;RPP=17743.9;RPPR=12582.3;RPR=0;RUN=1;SAF=8170;SAP=17743.9;SAR=0;SRF=5793;SRP=12582.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:16,39:16:568:39:1391:-108.772,0,-32.6047	0/1:232:77,155:77:2749:155:5545:-429.293,0,-171.168	0/1:290:181,109:181:6457:109:3827:-256.524,0,-477.983	0/1:294:130,164:130:4652:164:5865:-439.381,0,-291.801	0/1:108:32,76:32:1144:76:2706:-210.162,0,-66.0942	0/1:72:32,40:32:1148:40:1432:-107.402,0,-79.2733	0/1:212:57,155:57:2044:155:5499:-431.179,0,-105.139	0/1:314:154,160:154:5518:160:5726:-420.189,0,-385.951	0/1:144:39,105:39:1404:105:3740:-292.945,0,-80.0265	0/1:173:44,129:44:1580:129:4545:-355.46,0,-77.2015	0/1:84:37,47:37:1311:47:1686:-125.935,0,-83.0059	0/1:96:34,62:34:1196:62:2201:-169.447,0,-74.0167	0/1:101:40,61:40:1427:61:2153:-163.312,0,-94.652	0/1:133:46,87:46:1647:87:3077:-235.755,0,-100.866	0/1:92:34,57:34:1216:57:2029:-155.358,0,-72.4028	0/1:53:10,43:10:360:43:1528:-120.861,0,-15.5133	0/1:62:12,50:12:417:50:1773:-141.137,0,-16.2653	0/1:69:20,49:20:720:49:1748:-136.83,0,-41.2457	0/1:48:10,38:10:360:38:1324:-105.006,0,-17.5538	0/1:265:79,186:79:2807:186:6639:-517.423,0,-152.565	0/1:248:65,183:65:2323:183:6499:-508.935,0,-123.695	0/1:159:81,78:81:2904:78:2750:-199.848,0,-178.453	0/1:134:77,57:77:2741:57:2025:-141.293,0,-185.383	0/1:226:52,174:52:1864:174:6188:-487.507,0,-92.2346	0/1:105:34,71:34:1188:71:2528:-195.982,0,-70.7633	0/1:414:238,175:238:8536:175:6263:-439.087,0,-546.203	0/1:240:86,152:86:3088:152:5405:-414.558,0,-193.475	0/1:45:17,28:17:593:28:987:-75.5905,0,-38.0327	0/1:468:200,268:200:7144:268:9597:-717.272,0,-421.324	0/1:231:108,123:108:3857:123:4396:-324.607,0,-260.957	0/1:176:83,93:83:2971:93:3312:-245.299,0,-192.008	0/1:11:10,1:10:356:1:36:-0.285235,0,-26.9831	0/1:26:10,16:10:360:16:542:-41.2496,0,-22.7797	0/1:9:6,3:6:207:3:108:-7.29187,0,-15.0005	0/1:17:4,13:4:140:13:444:-34.9807,0,-6.89372	0/1:5:3,2:3:108:2:53:-3.5257,0,-8.30241	0/1:307:141,166:141:5041:166:5915:-436.238,0,-300.303	0/1:185:63,122:63:2249:122:4367:-337.477,0,-137.472	0/1:78:17,61:17:612:61:2184:-173.242,0,-29.8438	0/1:15:8,7:8:288:7:252:-18.4775,0,-19.7482	0/1:237:125,112:125:4484:112:3996:-288.477,0,-312.821	0/1:26:11,15:11:396:15:540:-41.1098,0,-26.4092	0/1:186:84,102:84:3008:102:3656:-272.74,0,-201.63	0/1:106:14,92:14:500:92:3291:-263.08,0,-9.61979	0/1:73:34,39:34:1220:39:1365:-100.669,0,-77.4474	0/1:110:54,56:54:1927:56:2001:-145.37,0,-118.753	0/1:190:87,103:87:3107:103:3692:-274.651,0,-214.021	0/1:302:177,125:177:6294:125:4459:-310.524,0,-430.174	0/1:156:55,101:55:1953:101:3611:-278.227,0,-110.504	0/1:232:66,166:66:2348:166:5941:-461.857,0,-125.455	0/1:246:60,186:60:2139:186:6611:-518.236,0,-94.3144	0/1:12:5,7:5:176:7:252:-19.1438,0,-10.1545	0/1:196:76,120:76:2702:120:4304:-328.288,0,-178.5	0/1:91:49,42:49:1756:42:1493:-107.269,0,-109.602	0/1:19:11,8:11:372:8:288:-20.3669,0,-26.6171	0/1:234:130,104:130:4663:104:3690:-260.414,0,-327.625	0/1:37:13,24:13:468:24:856:-66.2056,0,-27.9035	0/1:18:7,11:7:252:11:396:-30.1584,0,-13.1424	0/1:15:5,10:5:180:10:355:-27.6083,0,-9.72183	0/1:102:40,62:40:1432:62:2220:-168.632,0,-91.6587	0/1:173:79,94:79:2836:94:3340:-248.73,0,-180.744	0/1:10:3,7:3:108:7:252:-19.7898,0,-5.77059	0/1:288:109,179:109:3908:179:6381:-487.539,0,-219.935	0/1:362:156,206:156:5527:206:7298:-547.734,0,-347.13	0/1:179:40,139:40:1421:139:4922:-389.231,0,-65.7589	0/1:148:81,67:81:2896:67:2412:-172.54,0,-193.302	0/1:228:91,137:91:3256:137:4860:-368.861,0,-199.076	0/1:276:171,105:171:6156:105:3749:-254.433,0,-423.281	0/1:22:6,16:6:216:16:564:-44.4538,0,-10.5502	0/1:132:20,111:20:712:111:3927:-313.775,0,-23.0565	0/1:94:30,64:30:1076:64:2272:-176.17,0,-55.9889	0/1:35:16,19:16:576:19:680:-50.6694,0,-37.7271	0/1:339:147,191:147:5233:191:6804:-510.164,0,-356.687	0/1:161:77,84:77:2755:84:3016:-222.695,0,-187.681	0/1:256:155,100:155:5547:100:3583:-244.117,0,-397.561	0/1:383:205,178:205:7351:178:6369:-457.815,0,-489.448	0/1:118:46,72:46:1648:72:2584:-197.278,0,-108.566	0/1:150:54,96:54:1944:96:3433:-263.946,0,-123.699	0/1:21:17,4:17:612:4:140:-6.58626,0,-43.2813	0/1:220:95,125:95:3386:125:4471:-336.303,0,-220.821	0/1:120:28,92:28:1004:92:3276:-258.923,0,-51.6411	0/1:357:185,172:185:6596:172:6095:-441.071,0,-434.379	0/1:120:41,79:41:1472:79:2813:-217.277,0,-84.4929	0/1:70:27,43:27:968:43:1521:-116.093,0,-58.6774	0/1:88:19,69:19:684:69:2453:-193.493,0,-29.3873	0/1:171:49,122:49:1752:122:4338:-339.072,0,-93.9752	0/1:49:12,37:12:423:37:1313:-103.312,0,-21.9195	0/1:86:24,62:24:852:62:2204:-171.749,0,-48.5853	0/1:78:29,49:29:1036:49:1752:-133.948,0,-67.7047	0/1:33:9,24:9:320:24:856:-67.4085,0,-17.3149	0/1:118:43,75:43:1548:75:2643:-201.64,0,-95.2203	0/1:75:18,57:18:644:57:2032:-158.395,0,-31.0883	0/1:289:154,135:154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chr06	3218357	.	A	T	51473.3	PASS	AB=0.552108;ABP=102.583;AC=45;AF=0.239362;AN=188;AO=2352;CIGAR=1X;DP=9636;DPB=9636;DPRA=1.09653;EPP=5110.31;EPPR=15815.7;GTI=1;LEN=1;MEANALT=1;MQM=56.1475;MQMR=59.519;NS=94;NUMALT=1;ODDS=6.62163;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83991;QR=259190;RO=7282;RPL=572;RPP=1350.27;RPPR=14027.9;RPR=1780;RUN=1;SAF=572;SAP=1350.27;SAR=1780;SRF=212;SRP=14027.9;SRR=7070;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:13,27:13:444:27:964:-75.0356,0,-28.2429	0/0:101:101,0:101:3583:0:0:0,-30.404,-322.677	0/1:85:47,38:47:1684:38:1357:-96.8418,0,-126.259	0/0:152:152,0:152:5406:0:0:0,-45.7566,-484.506	0/1:76:25,51:25:900:51:1820:-140.175,0,-58.4427	0/1:39:23,16:23:824:16:576:-40.4348,0,-62.7431	0/0:170:170,0:170:6056:0:0:0,-51.1751,-545.12	0/1:100:47,53:47:1679:53:1876:-139.01,0,-121.293	0/1:94:55,39:55:1933:39:1395:-97.5515,0,-145.948	0/1:120:47,73:47:1661:73:2611:-197.649,0,-110.146	0/1:152:74,78:74:2643:78:2791:-204.866,0,-192.36	0/0:102:101,0:101:3588:0:0:0,-30.404,-322.767	0/1:81:37,44:37:1296:44:1558:-116.127,0,-92.5549	0/1:165:78,87:78:2746:87:3099:-228.033,0,-197.709	0/0:68:67,1:67:2392:1:36:0,-16.8718,-211.915	0/1:83:41,42:41:1440:42:1500:-109.348,0,-104.901	0/0:103:103,0:103:3666:0:0:0,-31.0061,-330.144	0/0:70:70,0:70:2498:0:0:0,-21.0721,-225.072	0/0:87:87,0:87:3087:0:0:0,-26.1896,-278.059	0/0:141:141,0:141:5043:0:0:0,-42.4452,-453.991	0/1:176:74,102:74:2633:102:3633:-272.91,0,-182.834	0/0:99:99,0:99:3512:0:0:0,-29.802,-315.169	0/1:98:38,60:38:1360:60:2148:-163.249,0,-91.7966	0/1:129:41,88:41:1460:88:3141:-242.433,0,-92.8446	0/1:119:40,79:40:1415:79:2815:-217.632,0,-91.8178	0/0:266:264,2:264:9423:2:72:0,-73.2963,-839.883	0/0:163:163,0:163:5800:0:0:0,-49.0679,-521.772	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8379	0/1:271:136,135:136:4850:135:4804:-346.946,0,-354.373	0/1:199:96,103:96:3370:103:3700:-271.463,0,-243.607	0/0:119:119,0:119:4258:0:0:0,-35.8226,-383.381	0/1:5:2,3:2:72:3:108:-8.52358,0,-4.59324	0/0:13:13,0:13:464:0:0:0,-3.91339,-41.361	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:12:3,9:3:104:9:324:-25.8935,0,-6.09045	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:231:106,125:106:3781:125:4487:-331.289,0,-270.924	0/0:263:263,0:263:9383:0:0:0,-79.1709,-844.417	0/0:97:97,0:97:3450:0:0:0,-29.1999,-310.713	0/1:14:9,5:9:320:5:180:-12.3376,0,-23.8641	0/0:116:116,0:116:4088:0:0:0,-34.9195,-368.101	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.573	0/1:122:63,59:63:2234:59:2090:-151.15,0,-164.591	0/1:113:53,60:53:1904:60:2136:-157.318,0,-137.607	0/1:65:25,40:25:882:40:1440:-109.882,0,-59.427	0/1:155:76,79:76:2699:79:2811:-205.288,0,-195.795	0/1:83:47,36:47:1683:36:1288:-91.2381,0,-126.771	0/0:115:115,0:115:4089:0:0:0,-34.6184,-367.469	0/0:112:112,0:112:4007:0:0:0,-33.7154,-360.811	0/1:166:64,102:64:2287:102:3652:-276.252,0,-155.403	0/1:136:44,92:44:1554:92:3300:-253.813,0,-99.1915	0/1:12:6,6:6:216:6:212:-15.5657,0,-14.0409	0/0:100:100,0:100:3550:0:0:0,-30.103,-319.71	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/1:135:49,86:49:1751:86:3071:-234.579,0,-115.119	0/0:52:52,0:52:1838:0:0:0,-15.6536,-165.691	0/1:26:13,13:13:464:13:464:-33.9149,0,-31.111	0/1:14:8,6:8:288:6:216:-15.4621,0,-22.0269	0/1:102:46,56:46:1639:56:2004:-149.192,0,-116.379	0/0:176:175,1:175:6246:1:36:0,-49.383,-558.63	0/1:15:5,10:5:180:10:360:-28.0139,0,-12.0283	0/0:152:151,1:151:5381:1:36:0,-42.1583,-480.091	0/0:158:152,6:152:5390:6:216:0,-27.9318,-463.635	0/0:67:67,0:67:2363:0:0:0,-20.169,-210.377	0/0:83:83,0:83:2903:0:0:0,-24.9855,-259.068	0/0:149:147,2:147:5260:2:72:0,-38.0167,-466.664	0/0:120:118,2:118:4223:2:58:0,-30.6743,-372.628	0/0:60:60,0:60:2130:0:0:0,-18.0618,-189.15	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/0:101:100,0:100:3572:0:0:0,-30.103,-321.411	0/1:16:5,11:5:176:11:396:-30.8838,0,-11.3685	0/0:103:103,0:103:3663:0:0:0,-31.0061,-329.875	0/1:88:32,56:32:1143:56:1998:-153.603,0,-76.6881	0/1:207:89,118:89:3151:118:4217:-316.001,0,-221.477	0/0:117:117,0:117:4164:0:0:0,-35.2205,-371.248	0/0:121:119,2:119:4258:2:55:0,-31.2001,-378.173	0/0:80:80,0:80:2826:0:0:0,-24.0824,-254.577	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	0/0:78:78,0:78:2780:0:0:0,-23.4803,-245.761	0/0:80:80,0:80:2837:0:0:0,-24.0824,-255.568	0/0:166:165,1:165:5883:1:36:0,-46.3727,-525.249	0/0:107:107,0:107:3836:0:0:0,-32.2102,-344.699	0/0:89:89,0:89:3161:0:0:0,-26.7917,-284.696	0/1:93:45,48:45:1612:48:1724:-126.667,0,-115.972	0/0:152:150,2:150:5376:2:72:0,-38.9198,-476.398	0/1:36:21,15:21:748:15:528:-37.0143,0,-56.8082	0/0:104:104,0:104:3718:0:0:0,-31.3071,-334.82	0/0:101:101,0:101:3591:0:0:0,-30.404,-323.396	0/0:118:118,0:118:4215:0:0:0,-35.5215,-378.812	0/1:217:121,96:121:4305:96:3436:-243.286,0,-319.775	0/1:94:33,61:33:1180:61:2172:-165.442,0,-78.2031	0/0:78:78,0:78:2754:0:0:0,-23.4803,-246.541	0/0:115:115,0:115:4089:0:0:0,-34.6184,-367.461
chr06	3218394	.	T	C	28719.9	PASS	AB=0.482539;ABP=12.5653;AC=45;AF=0.239362;AN=188;AO=1754;CIGAR=1X;DP=9033;DPB=9033;DPRA=0.912224;EPP=3794.42;EPPR=15515.2;GTI=3;LEN=1;MEANALT=1;MQM=59.9749;MQMR=60;NS=94;NUMALT=1;ODDS=0.619596;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62485;QR=261049;RO=7279;RPL=1752;RPP=3794.42;RPPR=15515.2;RPR=2;RUN=1;SAF=0;SAP=3811.77;SAR=1754;SRF=0;SRP=15809.2;SRR=7279;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:13,28:13:468:28:995:-77.5218,0,-30.1174	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/1:87:48,39:48:1720:39:1404:-100.47,0,-128.896	0/0:144:144,0:144:5165:0:0:0,-43.3483,-464.987	0/1:61:25,36:25:900:36:1280:-97.1404,0,-62.9582	0/1:40:23,17:23:828:17:604:-42.6494,0,-62.8029	0/0:179:179,0:179:6378:0:0:0,-53.8844,-574.11	0/1:102:48,54:48:1728:54:1936:-143.794,0,-125.1	0/1:95:56,39:56:2004:39:1372:-95.178,0,-152.036	0/1:91:42,49:42:1508:49:1737:-129.219,0,-108.621	0/1:139:76,63:76:2732:63:2243:-160.29,0,-204.279	0/0:104:104,0:104:3740:0:0:0,-31.3071,-336.799	0/1:81:38,43:38:1368:43:1517:-112.439,0,-99.0374	0/1:126:75,51:75:2700:51:1807:-124.981,0,-205.314	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:72:41,31:41:1472:31:1112:-78.7172,0,-111.102	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82	0/0:142:142,0:142:5096:0:0:0,-42.7463,-458.782	0/1:149:75,74:75:2692:74:2640:-192.991,0,-197.671	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/1:82:37,45:37:1332:45:1608:-120.326,0,-95.4979	0/1:94:38,56:38:1368:56:2000:-151.977,0,-95.124	0/1:114:41,73:41:1468:73:2593:-199.3,0,-98.0987	0/0:261:261,0:261:9353:0:0:0,-78.5688,-841.731	0/0:160:160,0:160:5733:0:0:0,-48.1648,-516.084	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:233:138,95:138:4941:95:3366:-232.698,0,-374.698	0/1:165:99,66:99:3552:66:2341:-161.278,0,-270.218	0/0:123:122,1:122:4376:1:32:0,-33.8274,-390.814	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:194:106,88:106:3800:88:3143:-224.696,0,-283.798	0/0:262:262,0:262:9397:0:0:0,-78.8699,-845.688	0/0:99:98,1:98:3512:1:36:0,-26.2037,-312.692	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:119:119,0:119:4261:0:0:0,-35.8226,-383.667	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:110:62,48:62:2228:48:1711:-121.162,0,-167.671	0/1:88:54,34:54:1944:34:1216:-83.2559,0,-148.745	0/1:53:24,29:24:864:29:1041:-78.05,0,-62.128	0/1:134:79,55:79:2821:55:1957:-136.066,0,-213.79	0/1:83:47,36:47:1692:36:1271:-89.7066,0,-127.581	0/0:111:111,0:111:3969:0:0:0,-33.4143,-357.399	0/0:119:119,0:119:4261:0:0:0,-35.8226,-383.667	0/1:125:62,63:62:2232:63:2256:-165.674,0,-163.515	0/1:97:44,53:44:1580:53:1892:-141.354,0,-113.292	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:101:101,0:101:3601:0:0:0,-30.404,-324.296	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/1:108:44,64:44:1576:64:2269:-171.96,0,-109.62	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:84:45,39:45:1616:39:1396:-100.653,0,-120.443	0/0:182:180,2:180:6460:2:72:0,-47.9507,-574.647	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:148:147,1:147:5272:1:36:0,-40.9542,-471.017	0/0:162:158,4:158:5652:4:135:0,-36.2843,-496.318	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:148:147,1:147:5280:1:36:0,-40.9542,-471.735	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.059	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:108:108,0:108:3833:0:0:0,-32.5112,-345.165	0/1:88:33,55:33:1188:55:1964:-150.544,0,-80.738	0/1:171:86,85:86:3073:85:3020:-220.554,0,-225.321	0/0:109:109,0:109:3907:0:0:0,-32.8123,-351.822	0/0:122:122,0:122:4388:0:0:0,-36.7257,-395.091	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.5	0/0:83:83,0:83:2973:0:0:0,-24.9855,-267.801	0/0:167:166,1:166:5960:1:36:0,-46.6737,-532.907	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.276	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.582	0/1:78:44,34:44:1580:34:1216:-86.2658,0,-119.011	0/0:153:152,1:152:5448:1:36:0,-42.4593,-486.85	0/1:38:23,15:23:828:15:532:-36.7739,0,-63.405	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.276	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/1:194:120,74:120:4308:74:2651:-180.436,0,-329.496	0/1:79:34,45:34:1224:45:1600:-120.509,0,-86.6857	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.814	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511
chr06	3218456	.	A	C	27255.1	PASS	AB=0.496654;ABP=3.34452;AC=44;AF=0.234043;AN=188;AO=1731;CIGAR=1X;DP=9248;DPB=9248;DPRA=0.965454;EPP=3727.17;EPPR=16284.7;GTI=4;LEN=1;MEANALT=1.09259;MQM=59.7319;MQMR=59.9344;NS=94;NUMALT=1;ODDS=0.405918;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60373;QR=268718;RO=7510;RPL=1727;RPP=3727.17;RPPR=16284.7;RPR=4;RUN=1;SAF=1731;SAP=3761.83;SAR=0;SRF=7510;SRP=16310.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:10,14:10:356:14:487:-36.9308,0,-25.1565	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/1:190:98,92:98:3496:92:3210:-231.915,0,-257.656	0/0:273:273,0:273:9764:0:0:0,-82.1812,-878.606	0/1:59:22,37:22:788:37:1290:-98.6386,0,-53.484	0/1:39:14,25:14:500:25:875:-67.3122,0,-33.596	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.634	0/1:203:111,92:111:3976:92:3218:-228.675,0,-296.912	0/1:72:50,22:50:1800:22:779:-48.7579,0,-140.608	0/1:72:34,38:34:1224:38:1320:-97.4223,0,-88.7929	0/1:49:22,27:22:792:27:923:-68.6273,0,-56.8327	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.025	0/1:70:34,36:34:1224:36:1224:-89.3482,0,-89.3949	0/1:62:37,25:37:1328:25:857:-58.7778,0,-101.089	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:40:15,25:15:536:25:884:-67.8326,0,-36.529	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.228	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:194:192,2:192:6869:2:68:0,-51.9421,-611.816	0/1:129:80,49:80:2872:49:1736:-117.692,0,-219.884	0/0:195:195,0:195:6961:0:0:0,-58.7008,-626.536	0/1:78:45,33:45:1616:33:1169:-82.0326,0,-122.245	0/1:59:32,27:32:1148:27:953:-68.3225,0,-85.8691	0/1:42:24,18:24:856:18:629:-44.2905,0,-64.7178	0/0:279:275,3:275:9872:3:99:0,-74.8021,-879.117	0/0:192:192,0:192:6868:0:0:0,-57.7978,-618.186	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:303:144,159:144:5103:159:5571:-410.306,0,-368.2	0/1:267:117,150:117:4172:150:5291:-395.512,0,-295.284	0/0:74:73,1:73:2616:1:36:0,-18.6779,-232.089	0/1:9:6,3:6:216:3:108:-7.3643,0,-17.0812	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:141:58,83:58:2080:83:2840:-213.392,0,-145.025	0/0:195:195,0:195:6996:0:0:0,-58.7008,-629.689	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/0:183:183,0:183:6541:0:0:0,-55.0885,-588.768	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/1:138:56,82:56:2008:82:2829:-213.305,0,-139.451	0/1:46:22,24:22:792:24:807:-59.0885,0,-57.7583	0/1:51:31,20:31:1116:20:698:-47.7889,0,-85.3992	0/1:78:43,35:43:1544:35:1235:-87.9722,0,-115.686	0/1:174:97,75:97:3480:75:2623:-184.173,0,-260.896	0/0:260:257,3:257:9180:3:104:0,-68.565,-816.469	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/1:172:91,81:91:3260:81:2856:-205.485,0,-241.843	0/1:104:56,48:56:1993:48:1683:-120.445,0,-148.335	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:173:173,0:173:6177:0:0:0,-52.0782,-555.838	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/1:22:12,10:12:424:10:356:-25.7586,0,-31.8738	0/1:177:100,77:100:3596:77:2719:-191.644,0,-270.55	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/1:16:6,9:6:216:9:324:-24.574,0,-14.9152	0/1:14:8,6:8:284:6:212:-15.2095,0,-21.6889	0/1:70:31,39:31:1108:39:1353:-100.935,0,-78.9589	0/0:99:99,0:99:3529:0:0:0,-29.802,-317.816	0/1:10:7,3:7:252:3:104:-6.69251,0,-20.0187	0/0:305:305,0:305:10905:0:0:0,-91.8141,-981.345	0/0:203:197,6:197:7056:6:216:0,-41.3186,-615.302	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:90:89,0:89:3200:0:0:0,-26.7917,-287.842	0/0:141:140,1:140:5020:1:36:0,-38.847,-448.34	0/0:188:186,2:186:6646:2:72:0,-49.7569,-591.34	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:36:13,23:13:460:23:828:-64,0,-30.8983	0/0:127:127,0:127:4521:0:0:0,-38.2308,-407.049	0/1:62:33,29:33:1165:29:1028:-74.1692,0,-86.4911	0/1:72:35,37:35:1232:37:1314:-96.8843,0,-89.5053	0/0:236:234,1:234:8376:1:36:0,-67.5071,-750.251	0/0:127:127,0:127:4537:0:0:0,-38.2308,-408.496	0/0:150:150,0:150:5361:0:0:0,-45.1545,-482.621	0/1:19:5,14:5:176:14:471:-36.9858,0,-10.4654	0/0:111:110,1:110:3939:1:36:0,-29.8161,-351.103	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.434	0/0:230:230,0:230:8224:0:0:0,-69.2369,-740.171	0/0:69:69,0:69:2471:0:0:0,-20.7711,-222.626	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.564	0/1:45:25,20:25:900:20:685:-48.4209,0,-67.7747	0/0:110:106,4:106:3792:4:127:0,-21.3689,-329.732	0/1:25:9,16:9:324:16:514:-39.0362,0,-21.9801	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.264	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.655	0/1:113:61,51:61:2175:51:1750:-123.738,0,-161.98	0/1:53:13,40:13:464:40:1326:-103.662,0,-26.1429	0/0:210:210,0:210:7501:0:0:0,-63.2163,-675.128	0/0:90:90,0:90:3201:0:0:0,-27.0927,-288.311
chr06	3218538	.	G	A	89743.9	PASS	AB=0.463821;ABP=136.722;AC=92;AF=0.494624;AN=186;AO=5462;CIGAR=1X;DP=11784;DPB=11784;DPRA=24.5167;EPP=11759.6;EPPR=13332.1;GTI=2;LEN=1;MEANALT=1.04444;MQM=55.9908;MQMR=59.868;NS=93;NUMALT=1;ODDS=0.978581;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195029;QR=225441;RO=6317;RPL=5450;RPP=11759.6;RPPR=13332.1;RPR=12;RUN=1;SAF=0;SAP=11863.6;SAR=5462;SRF=0;SRP=13720.2;SRR=6317;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:63,22:63:2241:22:788:-45.5425,0,-176.361	0/1:131:51,80:51:1824:80:2857:-217.565,0,-124.964	0/1:187:94,93:94:3320:93:3328:-242.737,0,-242.667	0/1:170:127,43:127:4531:43:1539:-87.1501,0,-356.78	0/1:54:29,25:29:1027:25:896:-64.6475,0,-76.4859	0/1:59:25,34:25:896:34:1207:-90.9413,0,-63.1996	0/1:97:42,55:42:1500:55:1968:-148.108,0,-106.095	0/1:192:105,87:105:3734:87:3093:-218.625,0,-278.434	0/1:129:104,25:104:3688:25:896:-42.0726,0,-293.28	0/1:135:84,51:84:3016:51:1798:-121.3,0,-231.029	0/1:113:30,83:30:1068:83:2961:-231.714,0,-62.4119	0/1:136:92,44:92:3283:44:1564:-99.9791,0,-254.732	0/1:163:101,62:101:3620:62:2194:-148.423,0,-276.934	0/1:169:60,109:60:2160:109:3889:-298.72,0,-143.783	0/1:132:65,67:65:2289:67:2397:-176.03,0,-166.534	0/1:81:59,22:59:2092:22:780:-46.0864,0,-164.164	0/1:160:37,123:37:1328:123:4412:-348.803,0,-71.6437	0/1:72:32,40:32:1135:40:1440:-107.567,0,-80.7751	0/1:45:29,16:29:1031:16:576:-38.577,0,-79.5563	0/1:111:60,51:60:2152:51:1836:-131.962,0,-160.329	0/1:146:105,41:105:3709:41:1461:-87.7404,0,-290.054	0/1:195:82,113:82:2935:113:4024:-303.146,0,-205.683	0/1:164:95,68:95:3416:68:2444:-170.828,0,-258.372	0/1:150:66,84:66:2364:84:2991:-223.986,0,-167.862	0/1:54:35,19:35:1256:19:657:-42.83,0,-97.0804	0/1:428:206,222:206:7387:222:7924:-583.636,0,-536.031	0/1:199:124,75:124:4426:75:2677:-180.852,0,-338.538	0/1:58:31,27:31:1116:27:959:-69.1027,0,-83.292	0/1:330:145,185:145:5208:185:6630:-496.996,0,-369.515	0/1:170:87,83:87:3107:83:2980:-216.763,0,-228.677	0/1:175:106,69:106:3795:69:2453:-168.131,0,-286.995	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:5:0,5:0:0:5:176:-16.1662,-1.50515,0	0/1:7:5,2:5:180:2:72:-4.72458,0,-14.4449	0/1:5:2,3:2:72:3:108:-8.55878,0,-5.33157	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:404:170,233:170:6079:233:8327:-626.444,0,-425.649	0/1:181:104,77:104:3707:77:2745:-192.242,0,-279.342	0/1:61:35,26:35:1252:26:928:-65.3328,0,-94.6123	.:.:.:.:.:.:.:.	0/1:148:70,78:70:2504:78:2772:-204.85,0,-181.038	0/1:40:15,25:15:540:25:891:-68.4051,0,-36.8949	0/1:172:113,59:113:4017:59:2116:-138.647,0,-309.929	0/1:91:53,38:53:1900:38:1341:-93.5186,0,-143.881	0/1:106:51,55:51:1820:55:1952:-143.718,0,-132.172	0/1:142:118,24:118:4211:24:860:-34.9156,0,-336.42	0/1:180:90,90:90:3208:90:3223:-235.581,0,-234.748	0/1:319:128,191:128:4588:191:6788:-513.769,0,-317.056	0/1:123:86,37:86:3071:37:1298:-80.0107,0,-239.592	0/1:105:56,49:56:2008:49:1752:-126.254,0,-149.384	0/1:172:108,64:108:3855:64:2288:-153.918,0,-295.363	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1844	0/1:66:44,22:44:1580:22:783:-50.8586,0,-122.623	0/1:68:57,11:57:2044:11:396:-15.4269,0,-163.762	0/1:17:10,7:10:360:7:252:-17.8948,0,-27.6268	0/1:151:93,56:93:3292:56:1983:-133.197,0,-251.387	0/1:50:28,22:28:992:22:792:-56.5201,0,-74.5406	0/1:8:6,2:6:216:2:72:-4.29026,0,-17.3823	0/1:13:4,9:4:144:9:324:-25.5784,0,-9.3542	0/1:102:58,44:58:2054:44:1547:-108.707,0,-154.424	0/1:279:96,183:96:3427:183:6544:-504.133,0,-224.651	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:204:154,50:154:5491:50:1792:-99.0486,0,-432.899	0/1:273:156,117:156:5532:117:4192:-294.795,0,-415.828	0/1:80:39,41:39:1387:41:1464:-107.561,0,-101.046	0/1:91:42,49:42:1500:49:1752:-130.489,0,-107.901	0/1:125:89,36:89:3170:36:1292:-78.067,0,-247.891	0/1:156:92,64:92:3292:64:2291:-159.367,0,-249.537	0/1:35:24,11:24:851:11:396:-25.4149,0,-66.3725	0/1:84:43,41:43:1539:41:1464:-106.25,0,-113.516	0/1:166:47,119:47:1676:119:4235:-331.008,0,-101.155	0/1:28:10,18:10:360:18:637:-49.083,0,-24.2085	0/1:202:93,109:93:3319:109:3880:-288.203,0,-237.962	0/1:186:89,97:89:3170:97:3450:-254.233,0,-229.53	0/1:232:103,129:103:3668:129:4629:-346.633,0,-260.032	0/1:152:67,85:67:2404:85:3034:-227.268,0,-170.854	0/1:140:75,65:75:2674:65:2332:-167.698,0,-198.738	0/1:89:60,29:60:2121:29:1040:-67.0531,0,-164.344	0/1:24:14,10:14:491:10:360:-25.4921,0,-37.2964	0/1:79:44,35:44:1576:35:1248:-88.64,0,-118.346	0/1:86:53,33:53:1874:33:1184:-80.8998,0,-142.858	0/1:235:168,67:168:6014:67:2391:-144.604,0,-470.616	0/1:202:70,132:70:2485:132:4713:-363.062,0,-163.094	0/1:129:60,69:60:2152:69:2480:-184.411,0,-155.113	0/1:104:35,69:35:1248:69:2480:-191.924,0,-81.3131	0/1:244:166,78:166:5935:78:2784:-177.197,0,-460.792	0/1:41:28,13:28:1000:13:459:-29.2742,0,-77.9731	0/1:123:75,48:75:2688:48:1720:-117.946,0,-205.138	0/1:88:53,35:53:1878:35:1252:-86.4119,0,-142.799	0/1:58:26,32:26:932:32:1152:-86.4554,0,-66.7391	0/1:137:83,53:83:2967:53:1896:-129.396,0,-225.962	0/1:95:77,18:77:2760:18:648:-30.0146,0,-220.043	0/1:179:101,78:101:3594:78:2796:-196.811,0,-269.781	0/1:194:94,100:94:3346:100:3565:-262.474,0,-242.888
chr06	3236570	.	CTCTGC	CTCTCT,CTCTCC	185364	PASS	AB=0.465254,0.526965;ABP=42.0939,26.5492;AC=143,43;AF=0.768817,0.231183;AN=186;AO=6622,1977;CIGAR=4M2X,4M1X1M;DP=8673;DPB=8672.83;DPRA=0,0.975813;EPP=14339.1,4296.01;EPPR=5.18177;GTI=0;LEN=2,1;MEANALT=2.24731,2.65385;MQM=59.7283,59.9302;MQMR=34;NS=93;NUMALT=2;ODDS=0.264354;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.333333;PQA=12,12;PQR=12;PRO=0.333333;QA=234397,70245;QR=36;RO=1;RPL=6610,1974;RPP=14278.5,4269.99;RPPR=5.18177;RPR=12,3;RUN=1,1;SAF=6615,1974;SAP=14321.8,4269.99;SAR=7,3;SRF=0;SRP=5.18177;SRR=1;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,15,12:0:0:15,12:506,432:-76.5991,-35.6088,-31.0934,-41.34,0,-37.7276	1/1:104:0,103,0:0:0:103,0:3658,0:-329.204,-31.0061,0,-329.204,-31.0061,-329.204	1/2:137:0,71,63:0:0:71,63:2517,2238:-387.449,-182.403,-161.03,-205.086,0,-186.121	1/1:153:0,147,1:0:0:147,1:5202,36:-467.918,-44.2514,0,-464.98,-41.2954,-464.679	1/2:99:0,35,64:0:0:35,64:1260,2279:-288.894,-186.106,-175.57,-103.146,0,-83.8804	1/2:69:0,27,41:0:0:27,41:954,1459:-196.592,-118.903,-110.775,-77.683,0,-65.3408	1/1:126:0,124,0:0:0:124,0:4347,0:-391.045,-37.3277,0,-391.045,-37.3277,-391.045	1/2:177:0,108,67:0:0:108,67:3802,2388:-504.022,-194.647,-162.136,-309.37,0,-289.201	1/2:86:0,36,50:0:0:36,50:1266,1753:-246.047,-142.997,-132.16,-103.401,0,-88.3494	1/2:87:0,35,52:0:0:35,52:1256,1855:-254.023,-151.575,-141.039,-102.805,0,-87.1513	1/2:89:0,47,42:0:0:47,42:1690,1508:-261.251,-123.371,-109.223,-138.239,0,-125.595	1/1:92:0,92,0:0:0:92,0:3248,0:-292.447,-27.6948,0,-292.447,-27.6948,-292.447	1/2:78:0,39,37:0:0:39,37:1402,1316:-221.682,-107.301,-95.5608,-114.434,0,-103.296	1/2:117:0,53,63:0:0:53,63:1863,2222:-331.976,-180.976,-165.021,-151.051,0,-132.086	1/1:81:0,79,0:0:0:79,0:2816,0:-253.318,-23.7814,0,-253.318,-23.7814,-253.318	1/2:59:0,27,31:0:0:27,31:963,1086:-166.897,-88.3923,-80.2645,-78.5369,0,-69.205	1/1:89:0,89,0:0:0:89,0:3145,0:-283.224,-26.7917,0,-283.224,-26.7917,-283.224	1/1:62:0,62,0:0:0:62,0:2219,0:-199.967,-18.6639,0,-199.967,-18.6639,-199.967	1/1:50:0,48,0:0:0:48,0:1700,0:-153.027,-14.4494,0,-153.027,-14.4494,-153.027	1/1:218:0,216,0:0:0:216,0:7699,0:-692.511,-65.0225,0,-692.511,-65.0225,-692.511	1/2:121:0,50,71:0:0:50,71:1733,2534:-347.782,-206.938,-191.886,-141.195,0,-119.822	1/1:61:0,60,0:0:0:60,0:2109,0:-189.776,-18.0618,0,-189.776,-18.0618,-189.776	1/2:109:0,50,58:0:0:50,58:1763,2057:-311.245,-167.699,-152.647,-143.667,0,-126.207	1/2:161:1,73,86:1:36:73,86:2571,3051:-454.736,-246.103,-226.695,-206.457,0,-183.136	1/2:108:0,54,54:0:0:54,54:1895,1910:-310.064,-155.921,-139.665,-154.495,0,-138.239	1/1:174:0,171,1:0:0:171,1:6083,36:-547.157,-51.4761,0,-544.219,-48.5082,-543.918	1/1:210:0,208,0:0:0:208,0:7402,0:-665.854,-62.6142,0,-665.854,-62.6142,-665.854	1/1:51:0,51,0:0:0:51,0:1813,0:-163.343,-15.3525,0,-163.343,-15.3525,-163.343	1/2:286:0,133,152:0:0:133,152:4765,5424:-830.594,-441.985,-401.948,-388.607,0,-342.85	1/2:83:0,26,54:0:0:26,54:910,1930:-230.863,-156.829,-149.002,-74.036,0,-57.7804	1/1:109:0,109,0:0:0:109,0:3871,0:-348.536,-32.8123,0,-348.536,-32.8123,-348.536	.:.:.:.:.:.:.:.	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/1:15:0,15,0:0:0:15,0:535,0:-48.4843,-4.51545,0,-48.4843,-4.51545,-48.4843	1/2:202:0,98,104:0:0:98,104:3503,3685:-586.11,-300.489,-270.988,-285.977,0,-254.67	1/1:76:0,76,0:0:0:76,0:2708,0:-243.856,-22.8783,0,-243.856,-22.8783,-243.856	1/1:89:0,87,0:0:0:87,0:3094,0:-278.271,-26.1896,0,-278.271,-26.1896,-278.271	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:166:0,166,0:0:0:166,0:5868,0:-527.975,-49.971,0,-527.975,-49.971,-527.975	1/1:44:0,44,0:0:0:44,0:1549,0:-139.699,-13.2453,0,-139.699,-13.2453,-139.699	1/2:167:0,73,93:0:0:73,93:2580,3281:-477.268,-267.153,-245.178,-210.109,0,-182.113	1/2:110:0,65,45:0:0:65,45:2324,1607:-320.869,-131.373,-111.806,-189.853,0,-176.307	1/2:72:0,31,40:0:0:31,40:1116,1398:-204.777,-113.712,-104.38,-91.0599,0,-79.0187	1/2:75:0,22,52:0:0:22,52:779,1852:-214.401,-150.947,-144.324,-63.4495,0,-47.796	1/2:91:0,32,59:0:0:32,59:1123,2108:-263.611,-172.228,-162.596,-91.7356,0,-73.9748	1/1:75:0,69,2:0:0:69,2:2411,72:-216.887,-20.7711,0,-211.012,-14.8887,-210.41	1/1:79:0,79,0:0:0:79,0:2787,0:-251.069,-23.7814,0,-251.069,-23.7814,-251.069	1/2:124:0,49,75:0:0:49,75:1719,2662:-357.137,-217.248,-202.498,-140.241,0,-117.664	1/2:164:0,86,78:0:0:86,78:3028,2774:-472.923,-226.42,-200.532,-246.856,0,-223.376	1/2:12:0,9,3:0:0:9,3:322,108:-35.4277,-9.17208,-6.46281,-26.6149,0,-25.7119	1/1:136:0,135,0:0:0:135,0:4780,0:-430.067,-40.6391,0,-430.067,-40.6391,-430.067	1/1:52:0,51,0:0:0:51,0:1814,0:-163.181,-15.3525,0,-163.181,-15.3525,-163.181	1/2:16:0,6,10:0:0:6,10:205,360:-46.3627,-29.734,-27.9278,-16.9771,0,-13.9668	1/2:88:0,45,42:0:0:45,42:1581,1504:-251.435,-122.759,-109.213,-128.778,0,-116.134	1/1:34:0,33,0:0:0:33,0:1184,0:-106.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chr06	3265961	.	GCCAC	ACCAC	157212	PASS	AB=0.504447;ABP=3.5511;AC=146;AF=0.776596;AN=188;AO=5800;CIGAR=1X4M;DP=7412;DPB=7412.6;DPRA=0;EPP=7.21697;EPPR=20.106;GTI=3;LEN=1;MEANALT=1.44681;MQM=59.9819;MQMR=59.9962;NS=94;NUMALT=1;ODDS=0.335501;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=18;PRO=0.5;QA=205009;QR=54337;RO=1565;RPL=22;RPP=12407.2;RPPR=3366.71;RPR=5778;RUN=1;SAF=2867;SAP=4.64115;SAR=2933;SRF=842;SRP=22.659;SRR=723;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:21,15:21:723:15:524:-36.6526,0,-54.5515	1/1:58:0,58:0:0:58:2022:-182.251,-17.4597,0	0/1:86:49,36:49:1687:36:1269:-88.6802,0,-126.282	1/1:99:0,99:0:0:99:3532:-318.09,-29.802,0	0/1:33:13,20:13:462:20:716:-54.8337,0,-31.9826	0/1:31:15,16:15:525:16:572:-42.4815,0,-38.2474	1/1:70:1,68:1:34:68:2415:-214.222,-17.6971,0	0/1:59:34,25:34:1203:25:892:-62.8389,0,-90.815	0/1:87:40,47:40:1331:47:1649:-122.506,0,-93.8881	0/1:48:31,17:31:1071:17:612:-40.964,0,-82.2475	0/1:141:64,76:64:2269:76:2707:-201.37,0,-161.969	1/1:191:0,191:0:0:191:6757:-608.211,-57.4967,0	0/1:198:101,97:101:3515:97:3454:-251.468,0,-256.959	0/1:181:79,100:79:2736:100:3552:-265.701,0,-192.295	1/1:147:0,146:0:0:146:5190:-466.832,-43.9504,0	0/1:192:87,105:87:3036:105:3732:-278.283,0,-215.677	1/1:128:0,127:0:0:127:4444:-399.772,-38.2308,0	1/1:136:0,135:0:0:135:4747:-427.035,-40.6391,0	1/1:87:1,86:1:36:86:3048:-270.954,-22.5913,0	1/1:54:1,53:1:36:53:1884:-166.24,-12.6573,0	0/1:87:26,61:26:899:61:2143:-166.946,0,-55.0328	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:60:36,24:36:1280:24:852:-58.9386,0,-97.4419	0/1:63:33,30:33:1145:30:1059:-76.6562,0,-84.39	0/1:36:22,14:22:775:14:496:-34.1372,0,-59.2334	1/1:77:0,75:0:0:75:2630:-236.589,-22.5773,0	1/1:112:1,109:1:34:109:3828:-341.335,-30.0476,0	1/1:91:0,90:0:0:90:3102:-279.14,-27.0927,0	0/1:96:52,44:52:1796:44:1563:-112.062,0,-133.02	0/1:28:13,15:13:451:15:528:-39.4225,0,-32.4916	1/1:62:0,61:0:0:61:2136:-192.176,-18.3628,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:10:0,7:0:0:7:252:-22.6691,-2.10721,0	0/1:2:1,1:1:23:1:36:-2.99621,0,-1.69785	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	0/1:301:147,152:147:5095:152:5395:-395.318,0,-368.339	1/1:33:0,33:0:0:33:1156:-104.343,-9.93399,0	1/1:101:0,100:0:0:100:3517:-316.472,-30.103,0	0/1:6:1,5:1:36:5:167:-13.5522,0,-1.79209	1/1:65:0,65:0:0:65:2300:-207.262,-19.567,0	1/1:60:0,60:0:0:60:2124:-191.429,-18.0618,0	0/1:76:39,36:39:1349:36:1284:-93.0722,0,-98.9157	0/1:104:42,62:42:1454:62:2180:-165.16,0,-99.845	0/1:122:62,60:62:2136:60:2128:-155.063,0,-155.783	0/1:42:19,23:19:640:23:800:-59.6725,0,-45.2719	0/1:49:27,22:27:928:22:768:-54.6899,0,-69.0813	1/1:68:1,64:1:36:64:2239:-198.214,-16.3144,0	1/1:52:0,52:0:0:52:1821:-164.17,-15.6536,0	0/1:56:29,27:29:1009:27:964:-70.2191,0,-74.2612	0/1:59:30,29:30:1047:29:1044:-76.514,0,-76.7785	0/1:9:6,2:6:216:2:72:-4.06865,0,-17.0224	1/1:44:0,44:0:0:44:1571:-141.681,-13.2453,0	1/1:43:0,43:0:0:43:1493:-134.658,-12.9443,0	1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0	0/1:67:30,37:30:1032:37:1316:-98.5728,0,-73.0175	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:62:39,21:39:1345:21:752:-49.7262,0,-103.07	1/1:174:0,173:0:0:173:6161:-554.282,-52.0782,0	0/1:4:2,2:2:69:2:72:-5.6326,0,-5.34842	1/1:48:0,48:0:0:48:1699:-153.194,-14.4494,0	1/1:70:1,69:1:31:69:2432:-216.035,-17.9726,0	1/1:46:0,45:0:0:45:1578:-142.054,-13.5464,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	1/1:71:3,67:3:94:67:2385:-206.154,-12.5513,0	1/1:86:2,83:2:63:83:2972:-261.749,-19.8754,0	1/1:98:0,97:0:0:97:3408:-306.726,-29.1999,0	1/1:35:0,35:0:0:35:1236:-111.543,-10.5361,0	1/1:128:1,126:1:36:126:4507:-402.2,-34.9924,0	0/1:11:5,6:5:178:6:212:-16.1135,0,-13.0573	1/1:54:0,53:0:0:53:1876:-168.759,-15.9546,0	0/1:52:24,28:24:816:28:980:-72.8594,0,-58.0981	0/1:115:50,65:50:1741:65:2302:-172.823,0,-122.355	1/1:53:0,52:0:0:52:1843:-165.809,-15.6536,0	1/1:69:0,69:0:0:69:2427:-218.684,-20.7711,0	1/1:61:0,61:0:0:61:2168:-195.387,-18.3628,0	0/1:6:2,4:2:65:4:144:-11.5074,0,-4.36685	1/1:57:0,57:0:0:57:1994:-179.723,-17.1587,0	1/1:60:0,59:0:0:59:2084:-187.488,-17.7608,0	1/1:63:0,62:0:0:62:2212:-199.061,-18.6639,0	1/1:158:1,156:1:31:156:5518:-493.56,-44.4971,0	1/1:138:1,135:1:36:135:4741:-423.279,-37.6883,0	0/1:180:96,83:96:3369:83:2910:-207.895,0,-249.187	1/1:235:1,234:1:35:234:8272:-741.004,-67.2434,0	0/1:50:22,28:22:781:28:996:-74.9034,0,-55.5624	1/1:127:0,126:0:0:126:4447:-400.047,-37.9298,0	1/1:134:0,134:0:0:134:4766:-429.1,-40.338,0	1/1:123:0,122:0:0:122:4310:-387.72,-36.7257,0	0/1:177:60,117:60:2074:117:4156:-320.944,0,-133.646	0/1:124:94,30:94:3282:30:1055:-57.9323,0,-258.274	1/1:81:1,80:1:30:80:2828:-251.762,-21.3839,0	1/1:223:0,219:0:0:219:7685:-691.411,-65.9256,0
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chr06	3421799	.	G	A	88045.7	PASS	AB=0.61846;ABP=960.427;AC=96;AF=0.510638;AN=188;AO=4868;CIGAR=1X;DP=7865;DPB=7865;DPRA=0;EPP=10573.7;EPPR=6474;GTI=13;LEN=1;MEANALT=1.15957;MQM=59.3071;MQMR=59.9903;NS=94;NUMALT=1;ODDS=0.224156;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174269;QR=106495;RO=2980;RPL=4867;RPP=10565.1;RPPR=6456.64;RPR=1;RUN=1;SAF=1;SAP=10565.1;SAR=4867;SRF=2978;SRP=6456.64;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:207:102,105:102:3633:105:3772:-277.243,0,-264.862	0/1:96:32,64:32:1133:64:2292:-177.533,0,-73.3778	0/1:215:80,135:80:2845:135:4836:-370.234,0,-191.566	0/1:24:11,13:11:392:13:464:-34.8502,0,-28.3953	0/1:24:12,12:12:432:12:432:-31.9788,0,-31.9965	0/1:122:50,72:50:1796:72:2550:-192.869,0,-125.197	0/1:51:23,28:23:820:28:1008:-75.6662,0,-58.77	0/1:63:30,33:30:1080:33:1180:-87.2101,0,-78.5484	0/1:79:50,29:50:1777:29:1040:-70.1055,0,-136.43	0/1:33:6,25:6:216:25:900:-71.6162,0,-10.0993	0/1:70:28,41:28:1008:41:1472:-111.619,0,-69.9055	0/1:45:16,29:16:572:29:1040:-80.3328,0,-38.2671	0/1:69:10,58:10:356:58:2076:-166.222,0,-11.5517	0/1:72:30,41:30:1076:41:1476:-111.362,0,-75.4199	0/1:28:14,14:14:504:14:504:-37.2467,0,-37.2693	0/1:94:12,82:12:432:82:2936:-236.106,0,-10.9244	0/1:82:24,58:24:860:58:2080:-162.737,0,-53.0374	0/1:78:19,59:19:684:59:2124:-167.93,0,-38.41	0/1:141:43,98:43:1533:98:3516:-273.122,0,-95.8159	0/1:93:48,45:48:1720:45:1600:-116.29,0,-127.09	0/1:130:59,71:59:2112:71:2548:-190.407,0,-151.215	0/1:43:34,9:34:1209:9:324:-16.5616,0,-96.1698	0/1:73:39,34:39:1385:34:1216:-87.7607,0,-102.972	0/1:37:23,14:23:828:14:496:-33.8279,0,-63.706	0/1:283:125,158:125:4450:158:5653:-423.464,0,-315.478	0/1:196:76,120:76:2717:120:4300:-328.031,0,-185.77	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	0/1:99:38,61:38:1351:61:2184:-166.972,0,-92.0876	0/1:102:31,70:31:1112:70:2492:-193.701,0,-69.6275	0/1:200:121,79:121:4325:79:2804:-191.327,0,-329.219	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:23:9,14:9:309:14:504:-38.7519,0,-21.217	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:3:1,2:1:36:2:72:-5.93321,0,-2.69518	0/1:15:2,13:2:68:13:468:-37.9442,0,-1.94226	0/1:98:37,60:37:1309:60:2140:-163.267,0,-88.55	0/1:252:94,158:94:3369:158:5652:-432.368,0,-227.564	0/1:91:26,65:26:936:65:2323:-181.875,0,-57.1657	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:129:57,71:57:2048:71:2540:-189.733,0,-145.847	0/1:52:8,43:8:288:43:1540:-123.267,0,-10.6882	0/1:50:18,32:18:648:32:1132:-86.6655,0,-43.6004	0/1:46:21,25:21:733:25:896:-67.0992,0,-52.4423	0/1:27:10,17:10:345:17:612:-47.2856,0,-23.253	0/1:92:66,26:66:2372:26:920:-55.3896,0,-186.043	0/1:32:12,20:12:432:20:712:-54.756,0,-29.5882	0/1:185:48,137:48:1716:137:4897:-385.066,0,-99.0351	0/1:122:39,83:39:1396:83:2976:-231.313,0,-89.2134	0/1:88:9,79:9:320:79:2840:-229.298,0,-2.65172	0/1:91:33,58:33:1188:58:2069:-159.055,0,-79.8349	1/1:3:0,3:0:0:3:104:-9.68859,-0.90309,0	0/1:152:59,91:59:2116:91:3252:-247.239,0,-145.194	0/1:48:16,32:16:576:32:1137:-88.1712,0,-37.7255	0/1:25:4,21:4:144:21:756:-60.8238,0,-5.78787	0/1:57:6,51:6:216:51:1832:-147.987,0,-2.59545	0/1:43:36,7:36:1266:7:252:-10.0568,0,-101.294	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	0/1:55:11,44:11:396:44:1580:-125.935,0,-19.4261	0/1:150:50,100:50:1792:100:3560:-275.355,0,-116.408	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/1:193:38,155:38:1364:155:5560:-442.22,0,-64.9619	0/1:154:51,103:51:1824:103:3700:-286.842,0,-118.082	0/1:67:21,46:21:752:46:1652:-128.755,0,-47.8372	0/1:60:13,47:13:468:47:1684:-133.544,0,-24.3978	0/1:226:136,90:136:4876:90:3212:-221.216,0,-370.935	0/1:136:49,87:49:1730:87:3116:-239.245,0,-115.041	0/1:39:9,30:9:324:30:1076:-85.3796,0,-17.7657	0/1:84:33,50:33:1188:50:1800:-136.694,0,-81.8833	0/1:102:35,66:35:1260:66:2376:-183.33,0,-82.9416	0/1:12:2,10:2:72:10:360:-29.1181,0,-3.22436	0/1:96:54,42:54:1917:42:1500:-106.356,0,-143.906	0/1:39:12,27:12:428:27:972:-76.0401,0,-27.1186	0/1:83:41,42:41:1464:42:1508:-111.029,0,-107.071	0/1:197:78,119:78:2804:119:4260:-324.092,0,-193.296	0/1:78:31,47:31:1097:47:1688:-128.548,0,-75.5577	0/1:161:49,112:49:1752:112:4008:-311.986,0,-109.498	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:130:52,78:52:1860:78:2800:-212.935,0,-128.546	0/1:92:15,77:15:536:77:2756:-220.156,0,-20.8801	0/1:187:68,119:68:2402:119:4260:-327.198,0,-160.142	0/1:105:42,63:42:1493:63:2268:-172.76,0,-103.054	0/1:51:18,33:18:648:33:1184:-91.5102,0,-43.2994	0/1:41:7,34:7:252:34:1212:-97.0303,0,-10.6867	0/1:115:44,71:44:1576:71:2532:-193.429,0,-107.513	0/1:19:8,11:8:284:11:388:-29.3781,0,-20.1838	0/1:87:38,49:38:1355:49:1752:-131.697,0,-96.0601	0/1:81:25,55:25:900:55:1960:-152.181,0,-56.8788	0/1:75:14,61:14:496:61:2196:-175.297,0,-22.397	0/1:66:15,50:15:540:50:1800:-142.351,0,-29.0472	0/1:44:22,21:22:792:21:744:-53.885,0,-58.3016	0/1:59:23,36:23:824:36:1288:-98.4078,0,-56.7225	0/1:111:40,70:40:1440:70:2496:-191.36,0,-96.4246
chr06	3426420	.	C	T	40234.4	PASS	AB=0.516523;ABP=10.9754;AC=47;AF=0.25;AN=188;AO=1763;CIGAR=1X;DP=7981;DPB=7981;DPRA=0.880234;EPP=213.099;EPPR=694.462;GTI=2;LEN=1;MEANALT=1;MQM=59.987;MQMR=59.9847;NS=94;NUMALT=1;ODDS=1.00151;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62555;QR=220277;RO=6217;RPL=1724;RPP=3500.06;RPPR=12623.2;RPR=39;RUN=1;SAF=1049;SAP=141.237;SAR=714;SRF=3711;SRP=510.173;SRR=2506;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:15,24:15:536:24:860:-65.9817,0,-36.8346	0/0:84:84,0:84:2987:0:0:0,-25.2865,-269.06	0/1:112:59,53:59:2102:53:1904:-137.922,0,-155.733	0/0:84:84,0:84:2995:0:0:0,-25.2865,-269.782	0/1:43:21,22:21:735:22:792:-58.6614,0,-53.5271	0/1:21:13,8:13:455:8:288:-19.9458,0,-34.9603	0/0:63:63,0:63:2228:0:0:0,-18.9649,-200.782	0/1:105:56,49:56:1987:49:1744:-125.633,0,-147.496	0/1:83:40,43:40:1401:43:1513:-111.476,0,-101.4	0/1:74:48,26:48:1711:26:911:-60.0282,0,-131.999	0/1:150:67,83:67:2353:83:2950:-220.579,0,-166.874	0/0:199:199,0:199:7029:0:0:0,-59.905,-632.678	0/1:210:103,107:103:3644:107:3818:-280.601,0,-264.949	0/1:145:79,66:79:2774:66:2344:-167.569,0,-206.251	0/0:154:154,0:154:5390:0:0:0,-46.3586,-485.232	0/1:136:66,70:66:2336:70:2472:-181.793,0,-169.558	0/0:132:132,0:132:4664:0:0:0,-39.736,-419.923	0/0:125:125,0:125:4429:0:0:0,-37.6287,-398.782	0/0:88:88,0:88:3108:0:0:0,-26.4906,-279.947	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453	0/1:109:55,54:55:1945:54:1923:-140.534,0,-142.512	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0693	0/1:30:14,16:14:504:16:567:-42.3305,0,-36.6672	0/1:62:32,30:32:1143:30:1061:-77.1355,0,-84.5148	0/1:47:19,28:19:671:28:1004:-76.5275,0,-46.5674	0/0:145:145,0:145:5127:0:0:0,-43.6493,-461.576	0/0:122:121,1:121:4316:1:36:0,-33.1274,-385.02	0/0:103:103,0:103:3650:0:0:0,-31.0061,-328.704	0/1:105:51,54:51:1828:54:1927:-142.098,0,-133.193	0/1:53:24,29:24:831:29:1016:-75.7971,0,-59.1485	0/0:43:43,0:43:1522:0:0:0,-12.9443,-137.272	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:355:174,181:174:6142:181:6427:-471.648,0,-446.011	0/0:42:42,0:42:1481:0:0:0,-12.6433,-133.582	0/0:150:150,0:150:5289:0:0:0,-45.1545,-476.14	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/0:65:65,0:65:2318:0:0:0,-19.5669,-208.879	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:57:28,29:28:991:29:1027:-75.5835,0,-72.309	0/1:182:95,87:95:3368:87:3068:-221.562,0,-248.549	0/1:106:60,46:60:2140:46:1616:-113.817,0,-160.959	0/1:57:23,34:23:828:34:1205:-91.5948,0,-57.6854	0/1:63:30,33:30:1072:33:1175:-87.0921,0,-77.8276	0/0:62:62,0:62:2196:0:0:0,-18.6639,-197.903	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:63:27,36:27:956:36:1288:-97.2587,0,-67.3908	0/1:35:23,12:23:824:12:417:-27.3242,0,-63.9473	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:43:42,1:42:1491:1:36:0,-9.34601,-130.886	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:74:35,39:35:1252:39:1390:-103.122,0,-90.7089	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:9:2,7:2:68:7:252:-20.3197,0,-3.74844	0/1:12:6,6:6:212:6:212:-15.8124,0,-15.8124	0/1:47:16,31:16:576:31:1108:-85.8826,0,-38.0266	0/0:170:170,0:170:6013:0:0:0,-51.1751,-541.282	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:81:81,0:81:2887:0:0:0,-24.3834,-260.067	0/0:89:88,1:88:3133:1:36:0,-23.1934,-278.597	0/0:39:39,0:39:1379:0:0:0,-11.7402,-124.408	0/0:42:42,0:42:1470:0:0:0,-12.6433,-132.593	0/0:85:84,1:84:2980:1:36:0,-21.9893,-264.833	0/0:77:76,1:76:2713:1:36:0,-19.581,-240.814	0/0:92:92,0:92:3257:0:0:0,-27.6948,-293.349	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.097	0/0:166:166,0:166:5870:0:0:0,-49.971,-528.414	0/1:14:8,6:8:288:6:216:-15.5713,0,-22.053	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:64:24,40:24:855:40:1428:-109.552,0,-58.0043	0/1:119:49,70:49:1716:70:2430:-183.127,0,-118.899	0/0:79:78,1:78:2782:1:36:0,-20.1831,-247.022	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:74:72,2:72:2554:2:72:0,-15.4395,-223.265	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:95:91,4:91:3244:4:144:0,-15.2842,-278.869	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:124:123,1:123:4380:1:36:0,-33.7294,-390.778	0/0:138:138,0:138:4889:0:0:0,-41.5421,-439.793	0/0:149:149,0:149:5227:0:0:0,-44.8535,-470.575	0/1:166:83,83:83:2935:83:2939:-214.772,0,-214.412	0/0:269:269,0:269:9509:0:0:0,-80.9771,-855.771	0/1:71:31,40:31:1104:40:1423:-106.994,0,-78.2975	0/0:126:126,0:126:4443:0:0:0,-37.9298,-400.042	0/0:126:126,0:126:4404:0:0:0,-37.9298,-396.536	0/0:88:88,0:88:3133:0:0:0,-26.4906,-282.195	0/1:159:80,79:80:2841:79:2803:-204.647,0,-208.064	0/1:163:58,105:58:2035:105:3717:-285.663,0,-134.352	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:267:266,0:266:9437:0:0:0,-80.074,-848.939
chr06	3426434	.	A	G	161556	PASS	AB=0.474674;ABP=21.3786;AC=139;AF=0.747312;AN=186;AO=6008;CIGAR=1X;DP=7775;DPB=7775;DPRA=23.2509;EPP=389.436;EPPR=155.882;GTI=3;LEN=1;MEANALT=1.06742;MQM=59.985;MQMR=59.9653;NS=93;NUMALT=1;ODDS=0.212452;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212795;QR=61610;RO=1760;RPL=6008;RPP=13049.2;RPPR=3824.8;RPR=0;RUN=1;SAF=3521;SAP=389.436;SAR=2487;SRF=1056;SRP=155.882;SRR=704;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:22,15:22:772:15:540:-37.7984,0,-58.6632	1/1:82:0,82:0:0:82:2928:-263.755,-24.6845,0	0/1:111:53,58:53:1900:58:2064:-152.617,0,-137.864	1/1:77:0,77:0:0:77:2723:-245.315,-23.1793,0	0/1:43:22,21:22:776:21:748:-54.701,0,-57.2179	0/1:22:9,13:9:295:13:468:-35.837,0,-20.2471	1/1:58:0,58:0:0:58:2071:-186.66,-17.4597,0	0/1:103:49,54:49:1744:54:1932:-143.15,0,-126.238	0/1:79:42,36:42:1488:36:1277:-91.3911,0,-110.374	0/1:73:26,47:26:907:47:1652:-126.99,0,-59.9692	0/1:146:85,61:85:2978:61:2168:-151.437,0,-224.306	1/1:195:0,195:0:0:195:6904:-621.425,-58.7009,0	0/1:209:109,100:109:3845:100:3540:-255.895,0,-283.334	0/1:138:65,73:65:2240:73:2616:-194.146,0,-160.322	1/1:146:0,146:0:0:146:5168:-465.263,-43.9504,0	0/1:137:73,64:73:2518:64:2268:-163.142,0,-185.632	1/1:123:0,123:0:0:123:4365:-393.026,-37.0267,0	1/1:125:0,125:0:0:125:4443:-400.041,-37.6288,0	1/1:85:2,83:2:72:83:2912:-255.48,-18.7508,0	1/1:88:0,88:0:0:88:3105:-279.679,-26.4906,0	0/1:110:55,55:55:1936:55:1951:-142.752,0,-141.403	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:27:15,12:15:514:12:423:-30.2773,0,-38.456	0/1:61:29,32:29:1016:32:1136:-84.1861,0,-73.3889	0/1:45:28,17:28:984:17:612:-41.8671,0,-75.3271	1/1:143:0,143:0:0:143:5080:-456.569,-43.0473,0	1/1:116:1,115:1:36:115:4123:-367.655,-31.3212,0	1/1:102:0,102:0:0:102:3622:-326.187,-30.7051,0	0/1:103:52,51:52:1851:51:1815:-132.625,0,-135.863	0/1:51:30,21:30:1051:21:739:-51.4798,0,-79.5471	1/1:40:0,40:0:0:40:1419:-128.006,-12.0412,0	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:356:185,171:185:6446:171:6030:-435.585,0,-472.53	1/1:43:0,43:0:0:43:1513:-136.459,-12.9443,0	1/1:147:0,147:0:0:147:5183:-466.605,-44.2514,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:62:0,61:0:0:61:2150:-193.407,-18.3628,0	1/1:56:0,56:0:0:56:1991:-179.464,-16.8577,0	0/1:55:27,28:27:951:28:996:-73.3982,0,-69.3477	0/1:180:88,92:88:3012:92:3215:-235.387,0,-217.134	0/1:102:45,57:45:1572:57:2019:-151.276,0,-111.065	0/1:57:33,24:33:1159:24:855:-60.1115,0,-87.4571	0/1:61:33,28:33:1176:28:984:-70.5078,0,-87.7849	1/1:60:0,60:0:0:60:2123:-191.337,-18.0618,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:60:35,25:35:1212:25:879:-61.365,0,-91.3212	0/1:33:10,21:10:347:21:752:-58.3147,0,-21.874	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	1/1:43:1,42:1:36:42:1499:-131.606,-9.34602,0	1/1:21:0,21:0:0:21:747:-67.5543,-6.32163,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:74:38,36:38:1344:36:1296:-94.6677,0,-98.9839	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/1:48:31,17:31:1088:17:608:-40.6026,0,-83.7798	1/1:165:1,164:1:36:164:5817:-520.046,-46.0717,0	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	1/1:79:0,79:0:0:79:2819:-253.949,-23.7814,0	1/1:88:1,87:1:36:87:3095:-275.18,-22.8924,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:40:0,40:0:0:40:1412:-127.375,-12.0412,0	1/1:85:1,83:1:36:83:2929:-260.247,-22.0481,0	1/1:77:1,76:1:36:76:2698:-239.466,-19.581,0	1/1:93:0,93:0:0:93:3302:-297.4,-27.9958,0	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	1/1:160:0,160:0:0:160:5648:-508.445,-48.1648,0	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5713	1/1:19:0,19:0:0:19:668:-60.4457,-5.71957,0	0/1:62:39,23:39:1400:23:815:-55.0069,0,-107.635	0/1:115:66,48:66:2275:48:1694:-118.107,0,-170.373	1/1:77:1,76:1:36:76:2702:-239.826,-19.581,0	1/1:41:0,41:0:0:41:1454:-131.154,-12.3422,0	1/1:70:2,68:2:72:68:2404:-209.779,-14.2354,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	1/1:94:4,90:4:144:90:3223:-276.978,-14.9832,0	1/1:66:0,66:0:0:66:2312:-208.34,-19.868,0	1/1:123:1,122:1:36:122:4323:-385.649,-33.4284,0	1/1:131:0,131:0:0:131:4633:-417.137,-39.4349,0	1/1:145:0,145:0:0:145:5100:-459.149,-43.6494,0	0/1:160:82,78:82:2864:78:2730:-197.778,0,-209.838	1/1:258:0,257:0:0:257:9058:-814.841,-77.3647,0	0/1:73:43,30:43:1503:30:1038:-71.7499,0,-113.587	1/1:117:0,117:0:0:117:4133:-372.157,-35.2205,0	1/1:122:1,121:1:36:121:4312:-384.66,-33.1274,0	1/1:89:0,89:0:0:89:3167:-285.255,-26.7917,0	0/1:156:78,78:78:2686:78:2739:-199.792,0,-195.026	0/1:158:105,53:105:3700:53:1871:-121.106,0,-285.642	1/1:74:0,74:0:0:74:2639:-237.757,-22.2762,0	1/1:266:0,266:0:0:266:9340:-840.579,-80.074,0
chr06	3460359	.	T	C	39452.7	PASS	AB=0.497017;ABP=3.38599;AC=46;AF=0.244681;AN=188;AO=2448;CIGAR=1X;DP=13202;DPB=13202;DPRA=0.846694;EPP=5318.77;EPPR=23355;GTI=4;LEN=1;MEANALT=1;MQM=59.96;MQMR=59.9331;NS=94;NUMALT=1;ODDS=3.7199;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86285;QR=383364;RO=10754;RPL=0;RPP=5318.77;RPPR=23355;RPR=2448;RUN=1;SAF=0;SAP=5318.77;SAR=2448;SRF=0;SRP=23355;SRR=10754;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:26,24:26:932:24:854:-62.1283,0,-69.1474	0/0:186:186,0:186:6642:0:0:0,-55.9916,-597.814	0/1:150:70,80:70:2468:80:2817:-208.613,0,-177.21	0/0:267:265,2:265:9459:2:68:0,-73.9173,-844.813	0/1:71:31,40:31:1116:40:1428:-107.44,0,-79.3786	0/1:52:25,27:25:900:27:959:-70.9718,0,-65.6675	0/0:254:253,1:253:9051:1:36:0,-72.8633,-810.473	0/1:236:139,97:139:4930:97:3424:-237.32,0,-372.745	0/1:136:62,74:62:2212:74:2591:-192.498,0,-158.405	0/1:120:57,63:57:2029:63:2223:-164.208,0,-146.755	0/1:95:43,52:43:1515:52:1822:-135.66,0,-108.045	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.585	0/1:96:43,53:43:1527:53:1851:-137.968,0,-108.823	0/1:132:64,68:64:2279:68:2396:-176.16,0,-165.636	0/0:87:87,0:87:3104:0:0:0,-26.1896,-279.568	0/1:55:24,31:24:860:31:1080:-80.9491,0,-61.1652	0/0:82:81,1:81:2869:1:36:0,-21.0862,-254.831	0/0:93:93,0:93:3301:0:0:0,-27.9958,-297.253	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.945	0/0:390:390,0:390:13938:0:0:0,-117.402,-1253.82	0/1:229:127,102:127:4527:102:3591:-254.457,0,-338.663	0/0:217:217,0:217:7757:0:0:0,-65.3235,-698.154	0/1:51:22,29:22:779:29:1018:-76.5779,0,-54.9885	0/1:113:71,42:71:2541:42:1460:-97.675,0,-194.923	0/1:123:68,55:68:2440:55:1963:-139.918,0,-182.828	0/0:409:409,0:409:14590:0:0:0,-123.121,-1312.66	0/0:381:378,3:378:13493:3:108:0,-104.617,-1203.98	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.47	0/1:425:207,218:207:7398:218:7722:-567.081,0,-537.926	0/1:237:120,117:120:4268:117:4112:-298.92,0,-312.954	0/0:101:100,1:100:3576:1:36:0,-26.8058,-318.413	0/1:5:2,3:2:57:3:108:-8.57002,0,-3.90816	0/0:15:14,1:14:491:1:36:0,-0.917175,-40.9228	1/1:2:0,2:0:0:2:66:-6.26795,-0.60206,0	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9981	0/1:183:96,87:96:3412:87:3052:-219.82,0,-252.202	0/0:275:275,0:275:9815:0:0:0,-82.7832,-883.299	0/0:99:99,0:99:3518:0:0:0,-29.802,-316.831	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:222:222,0:222:7883:0:0:0,-66.8287,-709.502	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/1:171:92,79:92:3291:79:2795:-200.308,0,-244.933	0/1:79:41,38:41:1455:38:1348:-97.8389,0,-107.464	0/1:61:28,33:28:978:33:1132:-83.8169,0,-69.9637	0/1:138:62,76:62:2215:76:2708:-202.42,0,-158.072	0/1:213:101,112:101:3593:112:3939:-290.475,0,-259.449	0/0:250:248,2:248:8867:2:72:0,-68.4208,-791.168	0/0:179:179,0:179:6403:0:0:0,-53.8844,-576.358	0/1:220:109,111:109:3911:111:3929:-287.576,0,-285.955	0/1:258:135,123:135:4823:123:4343:-313.38,0,-356.489	0/1:37:16,21:16:561:21:752:-56.8681,0,-39.679	0/0:249:249,0:249:8854:0:0:0,-74.9565,-796.839	0/0:96:96,0:96:3439:0:0:0,-28.8989,-309.722	0/1:24:11,13:11:392:13:453:-33.8749,0,-28.3953	0/1:181:87,94:87:3098:94:3310:-243.633,0,-224.561	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:28:21,7:21:752:7:252:-14.6001,0,-59.5774	0/1:137:72,65:72:2540:65:2274:-163.676,0,-187.609	0/0:155:155,0:155:5496:0:0:0,-46.6596,-494.766	0/1:18:8,10:8:280:10:343:-25.782,0,-20.1208	0/0:278:278,0:278:9918:0:0:0,-83.6863,-892.56	0/0:321:319,2:319:11371:2:72:0,-89.7939,-1016.36	0/0:108:108,0:108:3863:0:0:0,-32.5112,-347.865	0/0:157:157,0:157:5620:0:0:0,-47.2617,-505.922	0/0:170:169,1:169:6015:1:36:0,-47.5768,-537.858	0/0:175:174,1:174:6213:1:36:0,-49.082,-555.629	0/0:51:50,1:50:1758:1:36:0,-11.7543,-154.901	0/0:116:116,0:116:4151:0:0:0,-34.9195,-373.735	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.671	0/1:43:27,16:27:951:16:563:-38.0549,0,-72.96	0/0:153:151,2:151:5401:2:72:0,-39.2209,-479.181	0/1:84:48,36:48:1711:36:1276:-89.8565,0,-128.859	0/1:217:119,98:119:4234:98:3463:-246.557,0,-315.918	0/0:287:287,0:287:10229:0:0:0,-86.3956,-920.54	0/0:201:201,0:201:7157:0:0:0,-60.507,-643.24	0/0:197:197,0:197:7044:0:0:0,-59.3029,-633.909	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	0/0:184:182,2:182:6506:2:72:0,-48.5528,-578.784	0/0:198:198,0:198:7045:0:0:0,-59.6039,-633.922	0/0:381:378,3:378:13506:3:108:0,-104.617,-1205.25	0/0:108:108,0:108:3836:0:0:0,-32.5112,-345.434	0/0:96:96,0:96:3406:0:0:0,-28.8989,-306.753	0/1:89:49,40:49:1735:40:1399:-99.4125,0,-129.642	0/0:145:145,0:145:5112:0:0:0,-43.6493,-460.23	0/1:45:22,23:22:776:23:815:-60.1244,0,-56.6158	0/0:114:114,0:114:4070:0:0:0,-34.3174,-366.486	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.08	0/0:105:105,0:105:3743:0:0:0,-31.6081,-337.058	0/1:155:68,87:68:2410:87:3033:-226.542,0,-170.467	0/1:74:21,53:21:736:53:1873:-146.571,0,-44.2862	0/0:184:184,0:184:6539:0:0:0,-55.3895,-588.596	0/0:109:108,1:108:3852:1:36:0,-29.214,-343.267
chr06	3460394	.	TGAT	CGAC,CGAT	289777	PASS	AB=0.505474,0.490876;ABP=4.29416,6.57659;AC=142,46;AF=0.755319,0.244681;AN=188;AO=10966,2445;CIGAR=1X2M1X,1X3M;DP=13459;DPB=13459.2;DPRA=32.4879,0.741313;EPP=23815.4,5312.26;EPPR=0;GTI=4;LEN=4,1;MEANALT=2.06522,2.49091;MQM=59.921,59.955;MQMR=0;NS=94;NUMALT=2;ODDS=2.19915;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=387402,87151;QR=0;RO=0;RPL=10966,2445;RPP=23815.4,5312.26;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=23815.4,5312.26;SAR=10966,2445;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:51:0,26,24:0:0:26,24:918,851:-144.081,-69.326,-61.4992,-74.7497,0,-67.525	1/1:187:0,185,1:0:0:185,1:6560,36:-590.129,-55.6906,0,-587.191,-52.7531,-586.89	1/2:155:0,74,81:0:0:74,81:2623,2891:-449.453,-235.771,-213.495,-214.037,0,-189.654	1/1:272:0,268,2:0:0:268,2:9476,72:-852.488,-80.676,0,-846.613,-74.7638,-846.011	1/2:71:0,30,40:0:0:30,40:1077,1436:-205.045,-117.19,-108.16,-87.9105,0,-75.8693	1/2:55:0,26,29:0:0:26,29:914,1019:-157.689,-83.2914,-75.4646,-74.7489,0,-66.019	1/1:257:0,255,0:0:0:255,0:9062,0:-815.166,-76.7627,0,-815.166,-76.7627,-815.166	1/2:241:0,139,99:0:0:139,99:4898,3556:-688.921,-290.148,-248.305,-398.84,0,-369.038	1/2:144:0,66,77:0:0:66,77:2307,2747:-411.71,-224.059,-204.191,-187.769,0,-164.589	1/2:123:0,62,60:0:0:62,60:2163,2129:-349.373,-173.453,-154.789,-175.912,0,-157.851	1/2:95:0,42,52:0:0:42,52:1498,1859:-273.779,-151.664,-139.02,-122.199,0,-106.546	1/1:77:0,77,0:0:0:77,0:2748,0:-247.555,-23.1793,0,-247.555,-23.1793,-247.555	1/2:99:0,44,55:0:0:44,55:1581,1955:-288.647,-159.668,-146.423,-129.336,0,-112.78	1/2:134:0,65,69:0:0:65,69:2277,2437:-384.085,-198.814,-179.247,-185.623,0,-164.851	1/1:90:0,90,0:0:0:90,0:3176,0:-286.05,-27.0927,0,-286.05,-27.0927,-286.05	1/2:56:0,25,31:0:0:25,31:896,1100:-163.056,-89.9784,-82.4526,-73.4348,0,-64.1028	1/1:85:0,83,1:0:0:83,1:2904,32:-261.238,-24.9855,0,-258.66,-22.4271,-258.359	1/1:96:0,96,0:0:0:96,0:3384,0:-304.716,-28.8989,0,-304.716,-28.8989,-304.716	1/1:58:0,58,0:0:0:58,0:2068,0:-186.39,-17.4597,0,-186.39,-17.4597,-186.39	1/1:404:0,402,0:0:0:402,0:14252,0:-1282.02,-121.014,0,-1282.02,-121.014,-1282.02	1/2:229:0,127,101:0:0:127,101:4467,3557:-653.189,-289.567,-251.337,-363.613,0,-333.209	1/1:222:0,222,0:0:0:222,0:7887,0:-709.857,-66.8287,0,-709.857,-66.8287,-709.857	1/2:53:0,22,31:0:0:22,31:756,1108:-152.077,-90.6991,-84.0764,-61.7275,0,-52.3955	1/2:112:0,70,42:0:0:70,42:2483,1508:-325.665,-123.371,-102.299,-202.651,0,-190.008	1/2:125:0,70,54:0:0:70,54:2467,1940:-359.116,-158.261,-137.189,-200.851,0,-184.596	1/1:423:0,423,0:0:0:423,0:14900,0:-1340.52,-127.336,0,-1340.52,-127.336,-1340.52	1/1:389:0,387,0:0:0:387,0:13697,0:-1232.08,-116.499,0,-1232.08,-116.499,-1232.08	1/1:50:0,50,0:0:0:50,0:1786,0:-161.021,-15.0515,0,-161.021,-15.0515,-161.021	1/2:427:0,209,218:0:0:209,218:7409,7771:-1237.39,-633.798,-570.882,-603.947,0,-538.323	1/2:238:0,122,114:0:0:122,114:4281,4080:-681.173,-332.783,-296.057,-348.458,0,-314.141	1/1:103:0,101,1:0:0:101,1:3531,36:-317.627,-30.404,0,-314.689,-27.4666,-314.388	1/2:6:0,3,3:0:0:3,3:96,108:-16.8867,-9.17208,-8.26899,-8.05449,0,-7.1514	1/1:15:0,14,1:0:0:14,1:494,36:-44.4341,-4.21442,0,-41.4962,-0.917175,-41.1952	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:11:0,3,8:0:0:3,8:107,288:-32.5808,-23.8592,-22.9561,-9.07908,0,-6.67084	1/1:21:0,21,0:0:0:21,0:729,0:-65.9286,-6.32163,0,-65.9286,-6.32163,-65.9286	1/2:182:0,97,85:0:0:97,85:3461,3044:-530.745,-248.602,-219.402,-282.5,0,-256.912	1/1:283:0,282,0:0:0:282,0:9991,0:-898.779,-84.8905,0,-898.779,-84.8905,-898.779	1/1:102:0,102,0:0:0:102,0:3598,0:-324.029,-30.7051,0,-324.029,-30.7051,-324.029	1/2:8:0,5,3:0:0:5,3:178,108:-23.6772,-9.17208,-7.66693,-14.8635,0,-13.9604	1/1:224:0,224,0:0:0:224,0:7882,0:-709.42,-67.4307,0,-709.42,-67.4307,-709.42	1/1:59:0,59,0:0:0:59,0:2096,0:-188.907,-17.7608,0,-188.907,-17.7608,-188.907	1/2:180:0,100,79:0:0:100,79:3502,2812:-514.166,-229.231,-199.128,-284.987,0,-261.206	1/2:81:0,42,39:0:0:42,39:1482,1400:-235.233,-114.559,-101.916,-121.03,0,-109.29	1/2:64:0,30,34:0:0:30,34:1039,1193:-181.872,-97.4379,-88.407,-84.7823,0,-74.5473	1/2:139:0,63,76:0:0:63,76:2225,2724:-403.715,-222.521,-203.557,-181.549,0,-158.671	1/2:214:0,102,111:0:0:102,111:3568,3964:-613.387,-323.118,-292.413,-290.203,0,-256.788	1/1:253:0,250,2:0:0:250,2:8800,72:-791.633,-75.2575,0,-785.758,-69.3827,-785.156	1/1:180:0,178,0:0:0:178,0:6276,0:-564.582,-53.5833,0,-564.582,-53.5833,-564.582	1/2:222:0,110,111:0:0:110,111:3917,3978:-643.766,-324.512,-291.399,-319.33,0,-285.916	1/2:258:0,139,119:0:0:139,119:4906,4244:-745.804,-346.318,-304.475,-399.84,0,-364.018	1/2:38:0,16,22:0:0:16,22:552,779:-108.649,-63.8094,-58.9929,-45.1882,0,-38.5656	1/1:254:0,254,0:0:0:254,0:9003,0:-810.255,-76.4616,0,-810.255,-76.4616,-810.255	1/1:97:0,97,0:0:0:97,0:3445,0:-310.264,-29.1999,0,-310.264,-29.1999,-310.264	1/2:25:0,13,12:0:0:13,12:459,428:-72.6229,-35.2464,-31.3331,-37.7312,0,-34.1189	1/2:187:0,87,99:0:0:87,99:3067,3493:-534.14,-2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chr06	3480253	.	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chr06	3480269	.	A	G	31671.8	PASS	AB=0.487089;ABP=8.72979;AC=43;AF=0.228723;AN=188;AO=1940;CIGAR=1X;DP=9683;DPB=9683;DPRA=0.996881;EPP=4215.67;EPPR=16795;GTI=2;LEN=1;MEANALT=1.04;MQM=59.9474;MQMR=59.9775;NS=94;NUMALT=1;ODDS=3.07514;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68946;QR=277073;RO=7741;RPL=1940;RPP=4215.67;RPPR=16795;RPR=0;RUN=1;SAF=1940;SAP=4215.67;SAR=0;SRF=7741;SRP=16812.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:12,14:12:432:14:500:-37.5094,0,-31.3944	0/0:108:107,1:107:3789:1:36:0,-28.913,-337.61	0/1:100:52,48:52:1864:48:1712:-124.263,0,-137.936	0/0:313:313,0:313:11208:0:0:0,-94.2224,-1008.51	0/1:61:21,40:21:744:40:1436:-111.175,0,-48.9215	0/1:47:22,25:22:792:25:892:-66.2603,0,-57.4573	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/1:144:66,78:66:2360:78:2776:-206.731,0,-169.31	0/1:110:65,45:65:2317:45:1608:-111.897,0,-175.675	0/1:173:83,90:83:2963:90:3195:-235.674,0,-214.825	0/1:54:31,23:31:1108:23:816:-57.5055,0,-83.7754	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:82:45,37:45:1590:37:1320:-94.4175,0,-118.704	0/1:85:45,40:45:1616:40:1409:-101.515,0,-120.142	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:64:30,34:30:1076:34:1224:-91.2011,0,-77.8869	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:71:71,0:71:2511:0:0:0,-21.3731,-226.24	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:132:43,88:43:1540:88:3151:-244.117,0,-99.1965	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:93:51,42:51:1832:42:1503:-107.568,0,-137.165	0/1:164:94,70:94:3376:70:2497:-175.612,0,-254.686	0/1:48:18,30:18:640:30:1072:-82.343,0,-43.4799	0/0:412:410,2:410:14679:2:72:0,-117.188,-1313.99	0/0:169:169,0:169:6063:0:0:0,-50.8741,-545.766	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:182:89,93:89:3200:93:3284:-240.993,0,-233.435	0/1:157:88,69:88:3153:69:2470:-175.287,0,-236.731	0/0:183:177,6:177:6291:6:207:0,-36.1216,-547.314	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:232:119,113:119:4264:113:3999:-290.26,0,-314.099	0/0:230:230,0:230:8218:0:0:0,-69.2369,-739.63	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:7:5,2:5:176:2:68:-4.3505,0,-14.0778	0/0:175:175,0:175:6284:0:0:0,-52.6802,-565.651	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:139:81,57:81:2900:57:2013:-139.539,0,-219.334	0/1:79:31,48:31:1116:48:1700:-129.502,0,-76.9703	0/1:75:31,44:31:1103:44:1551:-117.304,0,-77.0026	0/1:128:64,64:64:2292:64:2292:-168.01,0,-168.01	0/1:128:59,69:59:2120:69:2460:-183.104,0,-152.537	0/0:234:234,0:234:8359:0:0:0,-70.441,-752.315	0/0:148:148,0:148:5292:0:0:0,-44.5524,-476.385	0/1:197:100,97:100:3592:97:3440:-250.51,0,-264.183	0/1:203:109,94:109:3878:94:3347:-240.339,0,-288.083	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:119:119,0:119:4246:0:0:0,-35.8226,-382.317	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	0/1:27:19,8:19:684:8:284:-17.7755,0,-53.6926	0/1:141:76,65:76:2710:65:2310:-165.715,0,-201.698	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:99:68,31:68:2433:31:1086:-68.2456,0,-189.422	0/0:144:142,2:142:5068:2:72:0,-36.5116,-449.427	0/1:7:2,5:2:68:5:176:-14.0754,0,-4.3505	0/0:256:256,0:256:9176:0:0:0,-77.0637,-825.81	0/0:252:252,0:252:9031:0:0:0,-75.8596,-812.766	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.607	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:170:168,2:168:6013:2:72:0,-44.3384,-534.436	0/0:76:74,2:74:2656:2:72:0,-16.0416,-232.449	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:26:16,10:16:576:10:360:-24.9175,0,-44.3482	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/1:104:61,43:61:2184:43:1527:-106.415,0,-165.519	0/1:274:161,113:161:5772:113:4029:-280.307,0,-437.112	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.472	0/0:101:101,0:101:3600:0:0:0,-30.404,-324.197	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.078	0/1:24:15,9:15:540:9:304:-20.4581,0,-41.7118	0/0:100:99,1:99:3552:1:36:0,-26.5047,-316.289	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:187:187,0:187:6663:0:0:0,-56.2926,-599.12	0/0:122:122,0:122:4358:0:0:0,-36.7257,-392.394	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:101:47,54:47:1684:54:1914:-142.132,0,-121.443	0/0:161:161,0:161:5792:0:0:0,-48.4658,-521.285	0/1:48:22,26:22:788:26:919:-68.5767,0,-56.7954	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/1:93:46,47:46:1648:47:1659:-121.6,0,-120.613	0/1:52:14,38:14:500:38:1324:-103.803,0,-29.6826	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311
chr06	3480334	.	G	T	138351	PASS	AB=0.536795;ABP=39.9239;AC=147;AF=0.781915;AN=188;AO=6436;CIGAR=1X;DP=7908;DPB=7908;DPRA=0;EPP=13978.6;EPPR=3190.73;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.9915;MQMR=60;NS=94;NUMALT=1;ODDS=1.54853;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229684;QR=51673;RO=1468;RPL=1;RPP=13969.9;RPPR=3190.73;RPR=6435;RUN=1;SAF=1;SAP=13969.9;SAR=6435;SRF=0;SRP=3190.73;SRR=1468;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:19,48:19:676:48:1716:-134.557,0,-40.999	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:149:68,81:68:2401:81:2890:-215.483,0,-171.49	1/1:247:1,246:1:32:246:8767:-785.63,-71.1551,0	0/1:35:17,18:17:608:18:632:-46.6701,0,-44.516	0/1:34:16,18:16:576:18:636:-47.333,0,-41.94	1/1:117:0,117:0:0:117:4175:-375.933,-35.2205,0	0/1:124:50,74:50:1764:74:2628:-199.441,0,-121.713	0/1:94:37,57:37:1292:57:2040:-155.575,0,-88.2814	0/1:59:16,43:16:572:43:1544:-121.492,0,-34.0527	0/1:35:18,17:18:639:17:608:-44.5136,0,-47.3022	1/1:74:0,74:0:0:74:2636:-237.488,-22.2762,0	0/1:74:32,42:32:1126:42:1499:-112.928,0,-79.3704	0/1:39:16,23:16:563:23:824:-62.7431,0,-39.259	1/1:58:0,58:0:0:58:2051:-184.861,-17.4597,0	0/1:56:31,25:31:1116:25:900:-64.4633,0,-83.894	1/1:21:0,21:0:0:21:746:-67.4646,-6.32163,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	1/1:136:0,136:0:0:136:4817:-433.685,-40.9401,0	0/1:140:76,64:76:2658:64:2304:-165.476,0,-197.321	1/1:95:0,95:0:0:95:3387:-305.046,-28.5979,0	0/1:120:52,68:52:1828:68:2436:-183.372,0,-128.674	0/1:31:20,11:20:699:11:381:-25.2887,0,-53.9005	0/1:74:25,49:25:888:49:1760:-136.408,0,-57.9628	1/1:257:1,255:1:36:255:9120:-817.175,-73.8252,0	1/1:157:0,157:0:0:157:5608:-504.843,-47.2617,0	1/1:30:0,30:0:0:30:1059:-95.6204,-9.0309,0	0/1:208:84,124:84:2899:124:4444:-337.516,0,-198.531	0/1:100:48,52:48:1716:52:1868:-138.296,0,-124.623	1/1:100:2,98:2:72:98:3465:-305.225,-23.2663,0	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:183:94,88:94:3298:88:3148:-228.398,0,-241.896	1/1:86:0,85:0:0:85:3043:-273.739,-25.5876,0	1/1:40:0,40:0:0:40:1426:-128.638,-12.0412,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:158:0,158:0:0:158:5660:-509.519,-47.5627,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:199:105,94:105:3713:94:3363:-242.981,0,-274.466	0/1:49:22,27:22:784:27:965:-72.4161,0,-56.1334	0/1:43:25,18:25:858:18:635:-44.5327,0,-64.5883	0/1:137:55,82:55:1918:82:2899:-219.904,0,-131.652	0/1:83:27,56:27:932:56:1992:-154.569,0,-59.2042	1/1:197:0,197:0:0:197:7026:-632.401,-59.3029,0	1/1:130:0,130:0:0:130:4602:-414.343,-39.1339,0	0/1:83:39,44:39:1387:44:1580:-117.506,0,-100.143	0/1:137:103,34:103:3612:34:1216:-68.5049,0,-284.044	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	1/1:86:1,85:1:36:85:3044:-270.591,-22.2903,0	0/1:12:5,7:5:171:7:252:-19.4166,0,-12.1131	0/1:89:44,45:44:1533:45:1602:-117.679,0,-111.465	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	0/1:51:27,24:27:937:24:852:-61.6479,0,-69.2886	1/1:88:1,87:1:36:87:3090:-274.729,-22.8924,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:166:0,166:0:0:166:5914:-532.371,-49.971,0	1/1:111:0,111:0:0:111:3969:-357.401,-33.4143,0	1/1:65:0,65:0:0:65:2306:-207.8,-19.567,0	1/1:66:0,65:0:0:65:2305:-207.35,-19.567,0	1/1:196:6,190:6:208:190:6750:-588.516,-39.9428,0	1/1:126:1,125:1:36:125:4447:-396.805,-34.3315,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	1/1:39:0,39:0:0:39:1390:-125.399,-11.7402,0	0/1:26:9,17:9:324:17:612:-47.5867,0,-21.6791	1/1:184:0,184:0:0:184:6587:-592.911,-55.3895,0	0/1:117:30,87:30:1057:87:3107:-244.636,0,-60.2185	0/1:233:96,137:96:3404:137:4911:-372,0,-236.435	1/1:151:0,151:0:0:151:5412:-487.209,-45.4555,0	1/1:116:0,116:0:0:116:4139:-372.693,-34.9195,0	1/1:68:1,67:1:36:67:2381:-210.948,-16.8718,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:102:0,102:0:0:102:3641:-327.894,-30.7051,0	1/1:252:0,252:0:0:252:8978:-808,-75.8596,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:47:0,47:0:0:47:1677:-151.217,-14.1484,0	0/1:40:21,19:21:732:19:680:-49.488,0,-54.1575	1/1:99:0,99:0:0:99:3532:-318.09,-29.802,0	0/1:27:11,16:11:392:16:567:-43.2329,0,-27.4922	1/1:57:0,57:0:0:57:2025:-182.522,-17.1587,0	1/1:64:0,64:0:0:64:2287:-206.091,-19.2659,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:101:59,42:59:2076:42:1500:-104.891,0,-156.707	0/1:53:35,18:35:1248:18:644:-42.336,0,-96.6703	1/1:144:0,144:0:0:144:5160:-464.54,-43.3483,0	1/1:84:0,84:0:0:84:3003:-270.501,-25.2865,0
chr06	3504669	.	T	C	218760	PASS	AB=0.519797;ABP=20.4638;AC=145;AF=0.771277;AN=188;AO=10102;CIGAR=1X;DP=12596;DPB=12596;DPRA=0;EPP=21696.7;EPPR=5334.26;GTI=3;LEN=1;MEANALT=1.03191;MQM=59.9837;MQMR=60;NS=94;NUMALT=1;ODDS=0.362309;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=361156;QR=89302;RO=2491;RPL=28;RPP=21696.7;RPPR=5334.26;RPR=10074;RUN=1;SAF=10102;SAP=21939.2;SAR=0;SRF=2491;SRP=5412.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:130:55,75:55:1964:75:2690:-203.211,0,-137.901	1/1:73:0,73:0:0:73:2617:-235.777,-21.9752,0	0/1:205:103,102:103:3689:102:3657:-267.621,0,-270.499	1/1:271:0,271:0:0:271:9663:-869.624,-81.5791,0	0/1:68:31,37:31:1112:37:1319:-98.5411,0,-79.9213	0/1:42:29,13:29:1044:13:468:-29.8164,0,-81.6315	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/1:130:58,72:58:2088:72:2580:-193.307,0,-149.056	0/1:229:109,120:109:3897:120:4279:-316.352,0,-281.987	0/1:78:39,39:39:1387:39:1392:-102.099,0,-101.648	0/1:98:45,53:45:1620:53:1900:-141.777,0,-116.589	1/1:170:0,170:0:0:170:6031:-542.808,-51.1751,0	0/1:133:57,76:57:2052:76:2732:-206.085,0,-144.914	0/1:102:47,55:47:1677:55:1961:-146.058,0,-120.51	1/1:126:0,126:0:0:126:4511:-406.157,-37.9298,0	0/1:72:31,41:31:1116:41:1456:-109.66,0,-79.0775	1/1:58:0,58:0:0:58:2079:-187.38,-17.4597,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:64:0,64:0:0:64:2284:-205.821,-19.2659,0	1/1:355:0,355:0:0:355:12664:-1139.59,-106.866,0	0/1:348:150,198:150:5388:198:7097:-534.024,0,-380.291	1/1:195:0,195:0:0:195:6993:-629.431,-58.7009,0	0/1:164:79,85:79:2844:85:3051:-225.449,0,-206.828	0/1:112:53,59:53:1900:59:2080:-153.645,0,-137.563	0/1:147:72,75:72:2584:75:2659:-195.303,0,-188.557	1/1:412:1,411:1:36:411:14683:-1317.61,-120.426,0	1/1:328:1,327:1:36:327:11706:-1049.81,-95.1396,0	1/1:59:0,59:0:0:59:2107:-189.899,-17.7608,0	0/1:266:106,160:106:3797:160:5731:-435.832,0,-261.852	0/1:164:75,89:75:2681:89:3177:-236.784,0,-192.164	1/1:122:6,116:6:216:116:4153:-354.161,-16.9351,0	0/1:12:5,7:5:180:7:244:-18.6871,0,-12.9397	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:300:133,167:133:4771:167:5966:-446.737,0,-339.236	1/1:230:0,230:0:0:230:8230:-740.711,-69.2369,0	1/1:92:0,92:0:0:92:3294:-296.678,-27.6948,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:126:2,124:2:72:124:4453:-394.102,-31.0931,0	1/1:83:0,83:0:0:83:2964:-266.98,-24.9855,0	0/1:220:111,109:111:3969:109:3900:-284.965,0,-291.173	0/1:135:58,77:58:2088:77:2760:-208.002,0,-147.551	0/1:59:28,31:28:991:31:1104:-81.9099,0,-71.7428	0/1:201:125,76:125:4480:76:2707:-183.366,0,-342.862	0/1:121:62,59:62:2220:59:2103:-153.114,0,-163.64	1/1:186:0,186:0:0:186:6618:-595.698,-55.9916,0	1/1:184:0,184:0:0:184:6574:-591.742,-55.3895,0	0/1:101:42,59:42:1512:59:2120:-160.664,0,-105.971	0/1:229:116,113:116:4157:113:4044:-295.212,0,-305.375	0/1:15:7,8:7:248:8:284:-21.3879,0,-18.1487	1/1:141:0,141:0:0:141:5044:-454.103,-42.4452,0	1/1:106:0,106:0:0:106:3804:-342.557,-31.9092,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:131:71,60:71:2540:60:2119:-151.541,0,-189.416	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	0/1:14:10,4:10:360:4:140:-8.73016,0,-28.5299	0/1:15:3,12:3:108:12:423:-33.8896,0,-5.55972	0/1:119:65,54:65:2340:54:1933:-138.423,0,-175.036	1/1:149:1,148:1:36:148:5295:-473.087,-41.2552,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:125:0,125:0:0:125:4487:-403.996,-37.6288,0	1/1:253:0,253:0:0:253:9081:-817.262,-76.1606,0	1/1:120:1,119:1:36:119:4263:-380.249,-32.5253,0	1/1:65:0,65:0:0:65:2331:-210.049,-19.567,0	1/1:350:6,344:6:208:344:12294:-1087.24,-86.3014,0	1/1:220:5,215:5:180:215:7671:-673.874,-49.6745,0	1/1:56:0,55:0:0:55:1967:-176.94,-16.5567,0	1/1:90:0,90:0:0:90:3224:-290.382,-27.0927,0	1/1:81:0,81:0:0:81:2890:-260.335,-24.3834,0	0/1:32:7,25:7:248:25:889:-70.6951,0,-13.0312	1/1:192:0,192:0:0:192:6849:-616.481,-57.7978,0	0/1:130:46,84:46:1644:84:2974:-228.76,0,-109.115	0/1:207:103,104:103:3700:104:3713:-272.057,0,-270.888	1/1:193:0,192:0:0:192:6891:-619.895,-57.7978,0	1/1:205:0,205:0:0:205:7303:-657.162,-61.7112,0	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	1/1:130:0,130:0:0:130:4650:-418.661,-39.1339,0	1/1:301:1,300:1:36:300:10708:-960.029,-87.0118,0	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	1/1:101:0,101:0:0:101:3619:-325.915,-30.404,0	0/1:144:64,80:64:2281:80:2872:-215.368,0,-162.202	1/1:340:5,334:5:180:334:11957:-1059.43,-85.8569,0	0/1:23:9,14:9:324:14:486:-37.1443,0,-22.5822	1/1:127:0,127:0:0:127:4552:-409.846,-38.2308,0	1/1:133:0,133:0:0:133:4740:-426.758,-40.037,0	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	0/1:190:110,80:110:3937:80:2855:-199.991,0,-297.325	0/1:182:121,61:121:4356:61:2184:-142.039,0,-337.425	1/1:171:0,171:0:0:171:6123:-551.156,-51.4761,0	1/1:166:0,166:0:0:166:5939:-534.617,-49.971,0
chr06	3504701	.	A	C	214927	PASS	AB=0.536308;ABP=59.4615;AC=145;AF=0.771277;AN=188;AO=10055;CIGAR=1X;DP=12367;DPB=12367;DPRA=0;EPP=21802.4;EPPR=5001.74;GTI=4;LEN=1;MEANALT=1.05319;MQM=59.9887;MQMR=59.9974;NS=94;NUMALT=1;ODDS=1.82312;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=357256;QR=79180;RO=2306;RPL=10051;RPP=21802.4;RPPR=5010.43;RPR=4;RUN=1;SAF=10055;SAP=21837.2;SAR=0;SRF=2305;SRP=5001.74;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:126:50,74:50:1707:74:2591:-195.751,0,-116.222	1/1:72:0,72:0:0:72:2552:-229.929,-21.6742,0	0/1:198:97,101:97:3288:101:3571:-261.992,0,-236.549	1/1:272:0,272:0:0:272:9622:-865.944,-81.8802,0	0/1:66:31,35:31:1067:35:1252:-93.1171,0,-76.4686	0/1:42:29,13:29:1012:13:451:-28.2766,0,-78.748	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:126:54,72:54:1794:72:2544:-191.272,0,-123.806	0/1:223:102,121:102:3534:121:4311:-321.038,0,-251.143	0/1:70:30,40:30:1048:40:1432:-108.105,0,-73.558	0/1:93:42,51:42:1435:51:1813:-135.454,0,-101.448	1/1:171:0,170:0:0:170:5999:-539.653,-51.1751,0	0/1:128:52,76:52:1800:76:2697:-204.442,0,-123.748	0/1:97:43,54:43:1496:54:1917:-143.606,0,-105.73	1/1:126:0,126:0:0:126:4464:-401.932,-37.9298,0	0/1:73:31,42:31:1063:42:1489:-112.327,0,-74.0011	1/1:57:0,57:0:0:57:2016:-181.712,-17.1587,0	1/1:39:0,39:0:0:39:1374:-123.957,-11.7402,0	1/1:63:0,63:0:0:63:2230:-200.962,-18.9649,0	1/1:354:0,354:0:0:354:12647:-1138.06,-106.565,0	0/1:326:132,194:132:4588:194:6913:-524.099,0,-314.962	1/1:194:0,194:0:0:194:6881:-619.362,-58.3998,0	0/1:163:76,87:76:2629:87:3103:-230.43,0,-187.793	0/1:106:48,58:48:1632:58:2084:-155.921,0,-115.253	0/1:134:60,74:60:2008:74:2628:-196.43,0,-140.653	1/1:418:1,417:1:32:417:14866:-1334.48,-122.631,0	1/1:328:0,328:0:0:328:11691:-1052.04,-98.7378,0	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	0/1:263:103,160:103:3552:160:5719:-435.657,0,-240.728	0/1:163:75,88:75:2594:88:3116:-231.599,0,-184.645	1/1:122:4,118:4:140:118:4197:-364.972,-23.7858,0	0/1:12:5,7:5:176:7:248:-19.0518,0,-12.5727	1/1:33:0,33:0:0:33:1157:-104.434,-9.93399,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:2,8:2:64:8:279:-22.4372,0,-3.06839	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:296:131,165:131:4516:165:5890:-441.106,0,-317.517	1/1:228:0,228:0:0:228:8082:-727.402,-68.6348,0	1/1:92:0,92:0:0:92:3279:-295.33,-27.6948,0	0/1:4:1,3:1:36:3:100:-8.12632,0,-2.39415	1/1:124:0,124:0:0:124:4385:-394.825,-37.3277,0	1/1:83:0,83:0:0:83:2938:-264.648,-24.9855,0	0/1:215:103,112:103:3518:112:3957:-291.596,0,-252.12	0/1:134:56,78:56:1955:78:2767:-208.934,0,-135.887	0/1:56:25,31:25:826:31:1108:-83.1733,0,-57.7868	0/1:192:115,77:115:4003:77:2747:-189.674,0,-302.673	0/1:114:56,58:56:1914:58:2072:-152.433,0,-138.22	1/1:184:1,183:1:36:183:6487:-580.321,-51.7912,0	1/1:180:0,180:0:0:180:6379:-574.205,-54.1854,0	0/1:93:33,60:33:1115:60:2151:-165.861,0,-72.6543	0/1:218:106,111:106:3593:111:3957:-290.638,0,-257.905	0/1:13:6,7:6:212:7:234:-17.4726,0,-15.5114	1/1:142:0,142:0:0:142:5080:-457.345,-42.7463,0	1/1:105:0,105:0:0:105:3723:-335.274,-31.6082,0	0/1:12:8,4:8:276:4:144:-9.70126,0,-21.5629	0/1:120:61,59:61:2072:59:2087:-151.976,0,-150.627	1/1:91:0,90:0:0:90:3214:-289.122,-27.0927,0	0/1:13:9,4:9:308:4:144:-9.40023,0,-24.1385	0/1:15:3,12:3:104:12:424:-33.981,0,-5.18736	0/1:116:63,53:63:2148:53:1895:-135.909,0,-158.669	1/1:148:0,148:0:0:148:5270:-474.439,-44.5524,0	0/1:13:4,9:4:128:9:320:-25.229,0,-7.92407	1/1:124:0,124:0:0:124:4416:-397.611,-37.3277,0	1/1:254:0,254:0:0:254:9014:-811.246,-76.4616,0	1/1:118:0,118:0:0:118:4196:-377.822,-35.5215,0	1/1:65:0,65:0:0:65:2298:-207.081,-19.567,0	1/1:351:3,348:3:100:348:12387:-1105.34,-96.3311,0	1/1:218:5,213:5:176:213:7559:-664.17,-49.4395,0	1/1:55:0,55:0:0:55:1963:-176.943,-16.5567,0	1/1:91:0,91:0:0:91:3218:-289.844,-27.3937,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:29:6,23:6:212:23:824:-65.7534,0,-10.6949	1/1:192:0,192:0:0:192:6768:-609.199,-57.7978,0	0/1:119:34,84:34:1170:84:2958:-230.574,0,-69.7214	0/1:199:96,103:96:3291:103:3660:-269.699,0,-236.513	1/1:193:1,192:1:32:192:6843:-612.741,-54.8995,0	1/1:205:0,205:0:0:205:7260:-653.387,-61.7112,0	1/1:46:0,46:0:0:46:1628:-146.809,-13.8474,0	0/1:17:11,6:11:384:6:207:-13.8494,0,-29.7772	1/1:77:0,77:0:0:77:2723:-245.315,-23.1793,0	1/1:128:0,128:0:0:128:4573:-411.735,-38.5318,0	1/1:297:2,295:2:68:295:10461:-934.958,-82.9482,0	1/1:72:0,72:0:0:72:2552:-229.929,-21.6742,0	1/1:98:0,98:0:0:98:3480:-313.412,-29.5009,0	0/1:142:65,77:65:2261:77:2743:-204.366,0,-161.007	1/1:339:6,333:6:212:333:11803:-1042.72,-82.6244,0	0/1:23:9,14:9:312:14:500:-38.4125,0,-21.4917	1/1:126:0,126:0:0:126:4461:-401.664,-37.9298,0	1/1:132:0,132:0:0:132:4709:-423.97,-39.736,0	1/1:93:0,93:0:0:93:3307:-297.85,-27.9958,0	0/1:181:103,78:103:3514:78:2762:-194.335,0,-261.993	0/1:177:116,61:116:3997:61:2159:-141.295,0,-306.649	1/1:170:0,170:0:0:170:6062:-545.681,-51.1751,0	1/1:165:1,164:1:32:164:5842:-522.695,-46.4706,0
chr06	3504765	.	G	T	133644	PASS	AB=0.504934;ABP=3.63167;AC=144;AF=0.765957;AN=188;AO=6144;CIGAR=1X;DP=7620;DPB=7620;DPRA=81.9247;EPP=13180;EPPR=3130.31;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.9914;MQMR=60;NS=94;NUMALT=1;ODDS=0.64554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219814;QR=52673;RO=1472;RPL=6125;RPP=13180;RPPR=3130.31;RPR=19;RUN=1;SAF=0;SAP=13344.5;SAR=6144;SRF=0;SRP=3199.42;SRR=1472;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:8,15:8:288:15:540:-42.0128,0,-19.3437	1/1:135:0,135:0:0:135:4840:-435.671,-40.6391,0	0/1:104:52,52:52:1856:52:1872:-137.452,0,-136.013	1/1:173:0,173:0:0:173:6184:-556.655,-52.0782,0	0/1:46:24,22:24:864:22:784:-57.0365,0,-64.2352	0/1:34:19,15:19:684:15:536:-38.3398,0,-51.6553	1/1:65:0,65:0:0:65:2325:-209.509,-19.567,0	0/1:166:87,79:87:3113:79:2835:-205.416,0,-230.424	0/1:68:38,30:38:1360:30:1080:-77.0432,0,-102.231	0/1:116:54,62:54:1936:62:2224:-165.505,0,-139.597	0/1:60:33,27:33:1188:27:972:-69.7361,0,-89.1668	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	0/1:69:37,32:37:1328:32:1152:-83.2191,0,-99.0512	0/1:76:30,46:30:1080:46:1656:-126.45,0,-74.635	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	0/1:53:23,30:23:824:30:1080:-81.5587,0,-58.5287	1/1:83:0,83:0:0:83:2984:-268.791,-24.9855,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:35:1,34:1:36:34:1224:-106.869,-6.93778,0	1/1:163:0,163:0:0:163:5818:-523.731,-49.0679,0	0/1:117:51,66:51:1828:66:2360:-177.438,0,-129.58	1/1:100:0,100:0:0:100:3577:-322.136,-30.103,0	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/1:75:36,39:36:1274:39:1390:-102.821,0,-92.3842	0/1:67:36,31:36:1277:31:1112:-80.2223,0,-95.0621	1/1:262:3,258:3:104:258:9202:-818.441,-69.2225,0	1/1:130:0,130:0:0:130:4638:-417.581,-39.1339,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:171:87,84:87:3108:84:3005:-219.203,0,-228.471	0/1:109:64,45:64:2304:45:1616:-112.918,0,-174.808	1/1:74:5,69:5:180:69:2476:-206.541,-5.72416,0	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:193:85,107:85:3056:107:3837:-287.366,0,-217.111	1/1:203:0,203:0:0:203:7221:-649.943,-61.1091,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:4:3,1:3:99:1:36:-2.39415,0,-8.03246	1/1:110:0,110:0:0:110:3933:-354.161,-33.1133,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:107:47,60:47:1676:60:2129:-159.667,0,-118.917	0/1:88:39,49:39:1388:49:1764:-132.553,0,-98.7283	0/1:64:31,33:31:1112:33:1180:-87.2421,0,-81.1254	0/1:70:40,30:40:1427:30:1080:-76.4412,0,-107.655	0/1:149:77,72:77:2760:72:2572:-186.876,0,-203.788	1/1:144:0,144:0:0:144:5164:-464.897,-43.3483,0	1/1:111:0,111:0:0:111:3946:-355.331,-33.4143,0	0/1:127:56,71:56:2000:71:2556:-192.059,0,-142.043	0/1:92:52,40:52:1852:40:1440:-102.203,0,-139.265	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:117:59,58:59:2104:58:2073:-151.62,0,-154.409	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:44:22,22:22:792:22:788:-57.9995,0,-58.3604	1/1:117:1,116:1:36:116:4157:-370.712,-31.6222,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:210:0,210:0:0:210:7478:-673.062,-63.2163,0	1/1:120:1,119:1:36:119:4210:-375.482,-32.5253,0	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	1/1:72:0,72:0:0:72:2544:-229.209,-21.6742,0	1/1:156:1,155:1:36:155:5497:-491.257,-43.3624,0	1/1:53:2,51:2:72:51:1832:-158.324,-9.11787,0	1/1:13:0,12:0:0:12:432:-38.8614,-3.61236,0	1/1:56:0,56:0:0:56:1982:-178.652,-16.8577,0	1/1:85:0,85:0:0:85:3045:-274.278,-25.5876,0	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	1/1:81:2,79:2:72:79:2821:-247.291,-17.5467,0	0/1:82:29,53:29:1040:53:1904:-146.953,0,-69.2299	0/1:75:39,36:39:1404:36:1296:-94.3667,0,-104.082	1/1:120:0,120:0:0:120:4305:-387.624,-36.1236,0	1/1:79:0,79:0:0:79:2804:-252.597,-23.7814,0	1/1:103:1,102:1:36:102:3664:-326.364,-27.4078,0	0/1:12:6,6:6:208:6:216:-16.1782,0,-15.4467	1/1:125:0,125:0:0:125:4469:-402.379,-37.6288,0	1/1:112:0,112:0:0:112:3990:-359.288,-33.7154,0	1/1:124:0,124:0:0:124:4464:-401.927,-37.3277,0	1/1:94:0,94:0:0:94:3365:-303.064,-28.2968,0	1/1:73:0,73:0:0:73:2613:-235.416,-21.9752,0	0/1:97:40,57:40:1411:57:2052:-155.751,0,-98.0866	1/1:187:0,187:0:0:187:6693:-602.445,-56.2926,0	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	1/1:81:0,81:0:0:81:2916:-262.674,-24.3834,0	1/1:86:0,86:0:0:86:3074:-276.888,-25.8886,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:60:30,30:30:1080:30:1080:-79.4515,0,-79.4515	0/1:66:51,15:51:1824:15:540:-29.0686,0,-144.573	1/1:80:0,80:0:0:80:2849:-256.647,-24.0824,0	1/1:93:0,92:0:0:92:3304:-297.218,-27.6948,0
chr06	3599458	.	AGAC	GGAT,GGAC	232856	PASS	AB=0.355354,0.638138;ABP=924.565,843.509;AC=141,47;AF=0.75,0.25;AN=188;AO=6997,3284;CIGAR=1X2M1X,1X3M;DP=10356;DPB=10356;DPRA=21.3049,1.37628;EPP=15196.8,7134.13;EPPR=16.0391;GTI=5;LEN=4,1;MEANALT=2.2967,2.68421;MQM=59.9857,59.9799;MQMR=55.3333;NS=94;NUMALT=2;ODDS=2.18718;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=243084,115684;QR=201;RO=6;RPL=5,1659;RPP=15153.4,3.77468;RPPR=3.0103;RPR=6992,1625;RUN=1,1;SAF=5,1659;SAP=15153.4,3.77468;SAR=6992,1625;SRF=3;SRP=3.0103;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:140:0,71,66:0:0:71,66:2452,2310:-387.157,-187.941,-166.568,-199.215,0,-179.347	1/1:53:0,51,1:0:0:51,1:1784,36:-160.482,-15.3525,0,-157.544,-12.4151,-157.243	1/2:275:0,127,147:0:0:127,147:4424,5190:-782.388,-422.63,-384.4,-359.748,0,-315.497	1/1:186:0,186,0:0:0:186,0:6516,0:-586.54,-55.9916,0,-586.54,-55.9916,-586.54	1/2:102:0,47,55:0:0:47,55:1615,1959:-291.152,-160.017,-145.868,-131.485,0,-114.928	1/2:71:0,20,51:0:0:20,51:700,1813:-205.05,-148.098,-142.077,-57.3031,0,-41.9506	1/1:65:0,62,2:0:0:62,2:2139,63:-192.446,-18.6639,0,-187.381,-13.6276,-186.779	1/2:176:0,71,105:0:0:71,105:2426,3729:-501.078,-304.203,-282.83,-197.221,0,-165.613	1/2:142:0,48,89:0:0:48,89:1627,3146:-388.156,-256.239,-241.79,-131.928,0,-105.136	1/2:105:0,32,73:0:0:32,73:1130,2561:-300.785,-208.763,-199.13,-92.3747,0,-70.3995	1/2:93:0,34,59:0:0:34,59:1172,2075:-264.458,-169.257,-159.022,-95.5478,0,-77.787	1/1:151:0,150,0:0:0:150,0:5221,0:-469.739,-45.1545,0,-469.739,-45.1545,-469.739	1/2:150:0,44,106:0:0:44,106:1557,3721:-430.01,-303.187,-289.942,-127.176,0,-95.2666	1/2:104:0,21,82:0:0:21,82:734,2862:-292.573,-232.861,-226.54,-59.7869,0,-35.1024	1/1:105:1,104,0:1:36:104,0:3651,0:-325.204,-28.015,0,-325.505,-31.3071,-328.438	1/2:119:0,49,70:0:0:49,70:1670,2482:-338.048,-202.561,-187.811,-135.833,0,-114.761	1/1:34:0,34,0:0:0:34,0:1192,0:-107.585,-10.235,0,-107.585,-10.235,-107.585	1/1:34:0,34,0:0:0:34,0:1203,0:-108.576,-10.235,0,-108.576,-10.235,-108.576	1/1:19:0,19,0:0:0:19,0:665,0:-60.1739,-5.71957,0,-60.1739,-5.71957,-60.1739	1/1:208:0,205,0:0:0:205,0:7158,0:-643.98,-61.7112,0,-643.98,-61.7112,-643.98	1/2:271:0,116,152:0:0:116,152:3983,5377:-761.431,-438.028,-403.108,-323.472,0,-277.715	1/1:67:0,67,0:0:0:67,0:2352,0:-211.939,-20.169,0,-211.939,-20.169,-211.939	1/2:163:0,79,84:0:0:79,84:2725,2934:-460.372,-239.006,-215.225,-221.713,0,-196.427	1/2:146:0,58,86:0:0:58,86:1993,3031:-408.635,-246.86,-229.4,-161.849,0,-135.961	1/2:110:0,28,82:0:0:28,82:990,2916:-318.621,-237.989,-229.56,-80.9852,0,-56.3008	1/1:208:0,204,2:0:0:204,2:7010,72:-630.647,-61.4101,0,-624.772,-55.5153,-624.17	1/1:288:0,283,1:0:0:283,1:9866,32:-887.603,-85.1915,0,-885.025,-82.6106,-884.724	1/1:35:0,35,0:0:0:35,0:1213,0:-109.47,-10.5361,0,-109.47,-10.5361,-109.47	1/2:291:0,125,165:0:0:125,165:4358,5843:-830.376,-475.954,-438.326,-354.413,0,-304.743	1/2:102:0,28,73:0:0:28,73:988,2573:-290.023,-209.571,-201.142,-80.5321,0,-58.5569	1/1:82:0,82,0:0:0:82,0:2854,0:-257.099,-24.6845,0,-257.099,-24.6845,-257.099	1/2:17:0,9,7:0:0:9,7:301,252:-44.919,-20.5619,-17.8527,-24.3476,0,-22.2404	1/1:15:0,15,0:0:0:15,0:520,0:-47.1275,-4.51545,0,-47.1275,-4.51545,-47.1275	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	2/2:5:0,0,5:0:0:0,5:0,165:-15.1736,-15.1736,-15.1736,-1.50515,-1.50515,0	1/1:16:0,16,0:0:0:16,0:563,0:-50.9997,-4.81648,0,-50.9997,-4.81648,-50.9997	1/2:291:0,91,199:0:0:91,199:3200,6983:-828.908,-568.426,-541.033,-260.622,0,-200.717	1/1:76:0,74,1:0:0:74,1:2556,36:-229.93,-22.2762,0,-226.992,-19.3388,-226.691	1/1:34:0,34,0:0:0:34,0:1187,0:-107.134,-10.235,0,-107.134,-10.235,-107.134	1/2:3:0,2,1:0:0:2,1:57,36:-7.77364,-3.29724,-2.69518,-4.81125,0,-4.51022	1/1:110:0,110,0:0:0:110,0:3819,0:-343.913,-33.1133,0,-343.913,-33.1133,-343.913	1/1:38:1,37,0:1:31:37,0:1298,0:-114.022,-8.33969,0,-114.323,-11.1381,-116.81	1/2:198:0,69,127:0:0:69,127:2384,4493:-559.775,-366.077,-345.306,-193.812,0,-155.582	1/2:132:0,41,90:0:0:41,90:1439,3143:-372.867,-255.754,-243.411,-117.211,0,-90.1182	1/2:110:0,33,77:0:0:33,77:1122,2665:-307.914,-216.913,-206.979,-91.3422,0,-68.1629	1/2:96:0,26,70:0:0:26,70:878,2489:-274.35,-203.19,-195.363,-71.5017,0,-50.4296	1/2:158:0,55,101:0:0:55,101:1876,3544:-440.75,-288.536,-271.979,-152.328,0,-121.924	1/1:174:0,169,3:0:0:169,3:5884,104:-529.353,-50.8741,0,-520.9,-42.3929,-519.997	1/1:67:0,65,0:0:0:65,0:2288,0:-205.852,-19.567,0,-205.852,-19.567,-205.852	1/2:146:0,51,94:0:0:51,94:1763,3330:-414.566,-271.319,-255.967,-143.294,0,-114.997	1/2:153:0,68,85:0:0:68,85:2372,2965:-434.323,-241.406,-220.936,-193.266,0,-167.678	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/1:155:0,154,0:0:0:154,0:5395,0:-485.399,-46.3586,0,-485.399,-46.3586,-485.399	1/1:57:0,57,0:0:0:57,0:1984,0:-178.824,-17.1587,0,-178.824,-17.1587,-178.824	1/2:21:0,4,16:0:0:4,16:140,572:-58.0266,-46.6373,-45.4331,-11.3828,0,-6.56631	1/2:230:0,93,135:0:0:93,135:3215,4753:-648.211,-386.977,-358.982,-261.27,0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chr06	3623527	.	G	T	27146.4	PASS	AB=0.486652;ABP=8.05353;AC=45;AF=0.239362;AN=188;AO=1616;CIGAR=1X;DP=7814;DPB=7814;DPRA=1.02172;EPP=3374.51;EPPR=12742.1;GTI=3;LEN=1;MEANALT=1;MQM=59.9647;MQMR=59.9848;NS=94;NUMALT=1;ODDS=0.3409;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57681;QR=221436;RO=6198;RPL=1600;RPP=3374.51;RPPR=12742.1;RPR=16;RUN=1;SAF=0;SAP=3512.11;SAR=1616;SRF=0;SRP=13461.8;SRR=6198;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:27,11:27:963:11:381:-23.1824,0,-75.5468	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/1:183:92,91:92:3286:91:3229:-235.744,0,-240.862	0/0:131:131,0:131:4672:0:0:0,-39.4349,-420.63	0/1:61:33,28:33:1184:28:1008:-72.6735,0,-88.5055	0/1:35:14,21:14:500:21:752:-57.4702,0,-34.8001	0/0:100:100,0:100:3566:0:0:0,-30.103,-321.148	0/1:122:55,67:55:1956:67:2385:-178.181,0,-139.59	0/1:105:54,51:54:1936:51:1815:-132.021,0,-142.908	0/1:54:26,28:26:928:28:1004:-74.4202,0,-67.5826	0/1:52:23,29:23:828:29:1044:-78.6212,0,-59.1906	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.964	0/1:61:25,36:25:900:36:1296:-98.5811,0,-62.9582	0/1:53:29,24:29:1040:24:860:-61.7672,0,-77.9598	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:61:26,35:26:932:35:1260:-95.3427,0,-65.836	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/0:140:140,0:140:4987:0:0:0,-42.1442,-448.98	0/1:183:93,90:93:3340:90:3201:-233.224,0,-245.728	0/0:142:142,0:142:5088:0:0:0,-42.7463,-458.063	0/1:149:91,58:91:3244:58:2068:-141.538,0,-247.326	0/1:69:45,24:45:1604:24:856:-56.59,0,-123.879	0/1:85:62,23:62:2224:23:828:-49.2566,0,-174.837	0/0:311:307,4:307:10970:4:138:0,-81.2414,-974.791	0/0:158:158,0:158:5656:0:0:0,-47.5627,-509.16	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:232:92,140:92:3296:140:4993:-379.679,0,-227.02	0/1:105:59,46:59:2112:46:1644:-116.64,0,-158.741	0/0:114:114,0:114:4040:0:0:0,-34.3174,-363.789	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:147:65,82:65:2315:82:2937:-220.312,0,-164.359	0/0:221:221,0:221:7908:0:0:0,-66.5276,-711.746	0/0:61:61,0:61:2155:0:0:0,-18.3628,-194.214	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.001	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:131:63,68:63:2260:68:2440:-180.42,0,-164.228	0/1:34:20,14:20:720:14:500:-35.1012,0,-54.8938	0/1:46:21,25:21:756:25:872:-64.9469,0,-54.5198	0/1:128:66,62:66:2332:62:2196:-159.371,0,-171.606	0/1:92:35,57:35:1256:57:2029:-155.186,0,-85.6505	0/0:76:72,4:72:2580:4:144:0,-9.56466,-219.136	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/1:116:75,41:75:2688:41:1472:-97.8567,0,-207.245	0/1:83:63,20:63:2248:20:716:-39.7822,0,-177.598	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:144:144,0:144:5129:0:0:0,-43.3483,-461.753	0/0:64:64,0:64:2252:0:0:0,-19.2659,-202.942	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:145:75,70:75:2683:70:2497:-181.328,0,-198.065	0/0:28:26,2:26:921:2:72:0,-1.59212,-76.3685	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	0/1:127:67,60:67:2400:60:2148:-155.357,0,-178.026	0/0:112:109,3:109:3894:3:108:0,-23.6402,-340.578	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	0/0:114:114,0:114:4076:0:0:0,-34.3174,-367.027	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.899	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:159:155,4:155:5522:4:140:0,-34.9192,-484.149	0/0:227:226,1:226:8096:1:32:0,-65.1345,-725.457	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:51:51,0:51:1812:0:0:0,-15.3525,-163.362	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	0/0:164:164,0:164:5858:0:0:0,-49.3689,-527.332	0/1:74:39,35:39:1389:35:1256:-91.0691,0,-103.031	0/1:125:59,66:59:2087:66:2343:-173.5,0,-150.443	0/0:170:170,0:170:6091:0:0:0,-51.1751,-548.29	0/0:97:97,0:97:3459:0:0:0,-29.1999,-311.515	0/0:64:63,1:63:2243:1:36:0,-15.6676,-198.478	0/1:17:4,13:4:140:13:468:-37.3421,0,-7.82707	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:139:139,0:139:4967:0:0:0,-41.8432,-447.179	0/0:151:149,2:149:5314:2:72:0,-38.6188,-471.559	0/0:52:51,1:51:1828:1:36:0,-12.0553,-161.203	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:33:17,16:17:589:16:572:-41.8794,0,-43.3993	0/0:93:93,0:93:3298:0:0:0,-27.9958,-297.038	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.689	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:154:77,77:77:2755:77:2756:-201.923,0,-201.833	0/1:65:29,36:29:1040:36:1292:-97.0168,0,-74.3474	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.189	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022
chr06	3623537	.	G	T	133755	PASS	AB=0.508366;ABP=5.00869;AC=143;AF=0.760638;AN=188;AO=6212;CIGAR=1X;DP=7863;DPB=7863;DPRA=10.5578;EPP=13362.2;EPPR=3527.44;GTI=3;LEN=1;MEANALT=1.07527;MQM=59.9792;MQMR=59.9823;NS=94;NUMALT=1;ODDS=0.867893;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222111;QR=58702;RO=1643;RPL=6197;RPP=13362.2;RPPR=3527.44;RPR=15;RUN=1;SAF=0;SAP=13492.2;SAR=6212;SRF=0;SRP=3570.74;SRR=1643;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:12,27:12:428:27:972:-76.0577,0,-27.1186	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	0/1:190:96,94:96:3428:94:3368:-246.138,0,-251.535	1/1:132:0,132:0:0:132:4697:-422.331,-39.736,0	0/1:62:28,34:28:992:34:1220:-91.4429,0,-70.9305	0/1:36:22,14:22:792:14:504:-34.861,0,-60.7686	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	0/1:121:70,50:70:2498:50:1781:-124.087,0,-188.588	0/1:107:52,54:52:1835:54:1906:-139.545,0,-133.156	0/1:57:30,27:30:1076:27:972:-70.6392,0,-79.9941	0/1:53:30,23:30:1068:23:828:-58.8895,0,-80.4775	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	0/1:62:36,26:36:1266:26:936:-65.8956,0,-95.5773	0/1:52:24,28:24:856:28:1008:-75.3828,0,-61.7075	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:64:38,26:38:1359:26:935:-65.2035,0,-103.344	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:20:0,20:0:0:20:712:-64.4061,-6.0206,0	1/1:46:0,46:0:0:46:1635:-147.437,-13.8474,0	1/1:139:0,139:0:0:139:4929:-443.756,-41.8432,0	0/1:184:91,93:91:3239:93:3333:-244.796,0,-236.343	1/1:144:0,144:0:0:144:5172:-465.618,-43.3483,0	0/1:151:59,92:59:2108:92:3297:-251.492,0,-144.534	0/1:70:25,45:25:900:45:1616:-124.658,0,-60.2489	0/1:85:23,62:23:828:62:2204:-173.036,0,-49.2566	1/1:313:2,311:2:72:311:11088:-990.7,-87.3857,0	1/1:159:0,159:0:0:159:5724:-515.273,-47.8638,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:233:142,91:142:5080:91:3257:-223.209,0,-387.202	0/1:107:48,59:48:1715:59:2114:-158.319,0,-122.425	1/1:115:0,114:0:0:114:4059:-365.134,-34.3174,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:28:0,28:0:0:28:993:-89.6825,-8.42884,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:149:84,65:84:2995:65:2332:-165.286,0,-224.929	1/1:223:0,223:0:0:223:7936:-714.263,-67.1297,0	1/1:60:0,60:0:0:60:2145:-193.316,-18.0618,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:102:0,102:0:0:102:3668:-330.317,-30.7051,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:131:67,64:67:2395:64:2300:-167.826,0,-176.372	0/1:34:14,20:14:500:20:720:-54.8938,0,-35.1012	0/1:44:24,20:24:856:20:716:-51.5224,0,-64.1158	0/1:126:60,66:60:2144:66:2327:-171.756,0,-155.296	0/1:93:57,36:57:2044:36:1296:-88.9481,0,-156.236	1/1:76:4,72:4:144:72:2588:-219.855,-9.56466,0	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	0/1:117:41,76:41:1467:76:2704:-208.382,0,-97.1048	0/1:82:20,62:20:720:62:2228:-176.099,0,-40.4443	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:146:0,146:0:0:146:5188:-467.056,-43.9504,0	1/1:64:0,64:0:0:64:2284:-205.821,-19.2659,0	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/1:145:70,75:70:2495:75:2681:-197.884,0,-181.149	1/1:28:2,26:2:68:26:932:-77.7412,-1.97113,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:128:60,68:60:2160:68:2436:-180.963,0,-156.135	1/1:112:3,109:3:108:109:3924:-343.275,-23.6402,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:117:0,117:0:0:117:4196:-377.821,-35.2205,0	1/1:86:0,86:0:0:86:3077:-277.157,-25.8886,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:46:0,46:0:0:46:1630:-146.986,-13.8474,0	1/1:158:4,154:4:144:154:5510:-482.708,-34.2491,0	1/1:227:1,225:1:36:225:8009:-717.229,-64.7943,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:51:0,51:0:0:51:1813:-163.45,-15.3525,0	0/1:28:11,17:11:383:17:608:-46.6232,0,-26.3744	1/1:162:0,162:0:0:162:5781:-520.401,-48.7669,0	0/1:76:37,39:37:1316:39:1385:-102.069,0,-95.8635	0/1:125:68,57:68:2440:57:2031:-145.432,0,-182.22	1/1:172:0,172:0:0:172:6120:-550.897,-51.7772,0	1/1:99:0,97:0:0:97:3424:-308.002,-29.1999,0	1/1:66:1,65:1:36:65:2318:-205.123,-16.2697,0	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	1/1:88:0,88:0:0:88:3153:-283.993,-26.4906,0	1/1:138:0,138:0:0:138:4959:-446.456,-41.5421,0	1/1:151:3,148:3:104:148:5285:-466.08,-35.7527,0	1/1:52:1,51:1:36:51:1821:-160.571,-12.0553,0	1/1:52:0,51:0:0:51:1836:-165.161,-15.3525,0	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	1/1:94:0,93:0:0:93:3333:-299.826,-27.9958,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:65:0,65:0:0:65:2323:-209.329,-19.567,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:153:77,76:77:2764:76:2725:-199.435,0,-202.944	0/1:67:38,29:38:1359:29:1044:-74.1058,0,-102.441	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0
chr06	3626623	.	C	G	106773	PASS	AB=0.506024;ABP=3.76901;AC=141;AF=0.766304;AN=184;AO=4969;CIGAR=1X;DP=6181;DPB=6181;DPRA=22.63;EPP=10793.1;EPPR=2619.63;GTI=2;LEN=1;MEANALT=1.04396;MQM=59.9712;MQMR=60;NS=92;NUMALT=1;ODDS=1.16019;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177449;QR=43048;RO=1205;RPL=4969;RPP=10793.1;RPPR=2619.63;RPR=0;RUN=1;SAF=0;SAP=10793.1;SAR=4969;SRF=0;SRP=2619.63;SRR=1205;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:19,12:19:684:12:424:-29.1645,0,-52.5584	1/1:54:0,54:0:0:54:1917:-172.803,-16.2556,0	0/1:84:39,45:39:1392:45:1608:-119.724,0,-100.292	1/1:117:0,117:0:0:117:4163:-374.855,-35.2205,0	0/1:35:12,23:12:432:23:824:-63.9473,0,-28.6851	0/1:33:15,18:15:536:18:644:-48.3281,0,-38.6408	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	0/1:82:34,48:34:1220:48:1697:-128.33,0,-85.4223	0/1:67:20,47:20:705:47:1688:-132.038,0,-43.6038	0/1:51:31,20:31:1104:20:716:-49.4152,0,-84.3181	0/1:42:26,16:26:932:16:572:-39.1702,0,-71.5556	1/1:81:0,81:0:0:81:2887:-259.638,-24.3834,0	0/1:43:20,23:20:716:23:824:-61.539,0,-51.8234	0/1:47:19,28:19:684:28:994:-75.626,0,-47.7419	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	0/1:52:21,31:21:741:31:1116:-85.0981,0,-51.358	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	1/1:190:0,190:0:0:190:6804:-612.431,-57.1957,0	0/1:81:50,31:50:1796:31:1104:-75.2872,0,-137.539	1/1:92:1,91:1:36:91:3256:-289.663,-24.0965,0	0/1:57:23,34:23:824:34:1224:-93.3083,0,-57.3246	0/1:27:19,8:19:684:8:288:-18.1396,0,-53.7625	0/1:58:29,29:29:1036:29:1036:-76.0942,0,-76.0942	1/1:180:0,180:0:0:180:6452:-580.763,-54.1854,0	1/1:128:0,128:0:0:128:4588:-413.084,-38.5318,0	1/1:19:0,19:0:0:19:668:-60.4253,-5.71957,0	0/1:200:77,123:77:2756:123:4383:-334.438,0,-188.076	0/1:91:48,43:48:1720:43:1544:-111.859,0,-127.692	1/1:74:2,72:2:72:72:2568:-224.534,-15.4395,0	.:.:.:.:.:.:.:.	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:145:66,79:66:2353:79:2836:-211.829,0,-168.378	1/1:62:0,62:0:0:62:2211:-199.254,-18.6639,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:150:0,146:0:0:146:5200:-467.792,-43.9504,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:106:45,61:45:1582:61:2192:-165.636,0,-110.757	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	0/1:84:46,38:46:1618:38:1364:-97.7742,0,-120.619	0/1:88:31,57:31:1112:57:2036:-157.022,0,-73.9007	1/1:113:0,113:0:0:113:4004:-360.552,-34.0164,0	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	0/1:70:29,41:29:1040:41:1472:-111.704,0,-72.8423	0/1:118:90,28:90:3221:28:1000:-54.7938,0,-254.589	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:95:0,95:0:0:95:3392:-305.496,-28.5979,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:115:63,52:63:2264:52:1862:-133.241,0,-169.404	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:46:22,24:22:780:24:856:-63.5137,0,-56.6757	1/1:75:0,75:0:0:75:2665:-240.095,-22.5773,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:146:0,146:0:0:146:5208:-468.859,-43.9504,0	1/1:148:3,145:3:108:145:5157:-454.189,-34.4773,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:49:0,49:0:0:49:1753:-158.054,-14.7505,0	1/1:136:1,134:1:36:134:4800:-428.557,-37.4006,0	1/1:141:4,136:4:144:136:4872:-425.348,-29.0705,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:34:1,33:1:36:33:1184:-103.27,-6.63675,0	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	0/1:27:16,11:16:568:11:392:-27.4922,0,-43.3241	1/1:150:0,150:0:0:150:5329:-479.746,-45.1545,0	0/1:104:60,44:60:2160:44:1576:-110.824,0,-163.36	0/1:126:50,76:50:1777:76:2723:-207.383,0,-122.281	1/1:85:0,85:0:0:85:3000:-270.233,-25.5876,0	1/1:82:0,82:0:0:82:2901:-261.327,-24.6845,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:50:0,50:0:0:50:1768:-159.401,-15.0515,0	1/1:129:0,128:0:0:128:4576:-411.646,-38.5318,0	1/1:132:0,132:0:0:132:4708:-423.881,-39.736,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:63:0,63:0:0:63:2243:-202.133,-18.9649,0	0/1:27:14,13:14:496:13:464:-33.9697,0,-36.8465	1/1:109:0,109:0:0:109:3898:-351.013,-32.8123,0	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	1/1:48:0,48:0:0:48:1711:-154.275,-14.4494,0	1/1:44:0,44:0:0:44:1571:-141.681,-13.2453,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:85:56,29:56:1991:29:1031:-67.5151,0,-153.876	0/1:61:37,24:37:1328:24:860:-59.359,0,-101.459	1/1:87:0,87:0:0:87:3105:-278.821,-26.1896,0	1/1:59:0,59:0:0:59:2103:-189.539,-17.7608,0
chr06	3652896	.	C	A	6607.46	PASS	AB=0.320476;ABP=496.536;AC=39;AF=0.207447;AN=188;AO=600;CIGAR=1X;DP=7112;DPB=7112;DPRA=0.763961;EPP=1297.22;EPPR=14137.1;GTI=13;LEN=1;MEANALT=1.04;MQM=59.8117;MQMR=59.966;NS=94;NUMALT=1;ODDS=0.393179;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21392;QR=232325;RO=6509;RPL=599;RPP=1297.22;RPPR=14137.1;RPR=1;RUN=1;SAF=0;SAP=1305.89;SAR=600;SRF=0;SRP=14137.1;SRR=6509;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:26,6:26:900:6:216:-10.1576,0,-71.675	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/0:148:140,8:140:5008:8:288:0,-18.285,-424.6	0/0:190:190,0:190:6780:0:0:0,-57.1957,-610.273	0/0:46:43,3:43:1548:3:104:0,-4.14457,-129.91	0/1:29:24,5:24:838:5:180:-7.82219,0,-67.0065	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:89:73,16:73:2603:16:576:-25.3833,0,-207.726	0/1:53:40,13:40:1406:13:468:-26.5051,0,-110.881	0/1:49:33,16:33:1173:16:576:-37.4245,0,-91.1251	0/1:26:18,8:18:648:8:288:-18.4406,0,-50.8251	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	0/1:32:22,10:22:780:10:356:-22.7483,0,-60.8901	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:35:23,12:23:828:12:428:-28.3228,0,-64.2519	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0516	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:251:250,0:250:8955:0:0:0,-75.2575,-805.568	0/1:125:61,64:61:2172:64:2285:-168.277,0,-158.118	0/0:179:179,0:179:6380:0:0:0,-53.8844,-574.198	0/0:84:76,8:76:2707:8:276:0,-0.111271,-218.699	0/1:41:35,6:35:1243:6:216:-7.44828,0,-99.8316	0/0:54:51,3:51:1816:3:108:0,-6.18045,-153.646	0/0:258:257,1:257:9187:1:36:0,-74.0675,-823.182	0/0:222:222,0:222:7930:0:0:0,-66.8287,-713.705	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:178:126,52:126:4489:52:1856:-113.734,0,-350.593	0/1:89:62,27:62:2215:27:972:-61.0047,0,-172.818	0/0:88:87,1:87:3116:1:36:0,-22.8924,-277.068	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:92:57,35:57:2044:35:1241:-84.2929,0,-156.537	0/0:177:177,0:177:6360:0:0:0,-53.2823,-572.218	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.48	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:159:159,0:159:5689:0:0:0,-47.8638,-512.127	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:102:87,15:87:3111:15:540:-18.2315,0,-249.511	0/1:43:29,14:29:1040:14:500:-32.3919,0,-80.9701	0/1:31:20,11:20:712:11:396:-26.6508,0,-55.0747	0/1:75:65,10:65:2305:10:360:-10.1671,0,-185.132	0/1:67:58,9:58:2067:9:316:-8.60874,0,-166.131	0/0:204:204,0:204:7278:0:0:0,-61.4101,-655.067	0/0:77:77,0:77:2740:0:0:0,-23.1793,-246.844	0/1:116:52,63:52:1868:63:2203:-163.183,0,-133.42	0/1:57:47,10:47:1672:10:351:-14.7376,0,-133.609	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:107:107,0:107:3852:0:0:0,-32.2102,-346.874	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/1:71:42,29:42:1483:29:1044:-72.8153,0,-112.391	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:27:26,1:26:918:1:36:0,-4.52953,-79.337	0/0:62:62,0:62:2187:0:0:0,-18.6639,-197.096	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:290:290,0:290:10362:0:0:0,-87.2987,-932.274	0/0:125:124,1:124:4411:1:36:0,-34.0305,-393.565	0/0:40:40,0:40:1419:0:0:0,-12.0412,-128.006	0/0:110:110,0:110:3906:0:0:0,-33.1133,-351.727	0/0:171:170,1:170:6053:1:36:0,-47.8779,-541.275	0/0:132:129,2:129:4620:2:72:0,-32.958,-409.127	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:46:46,0:46:1624:0:0:0,-13.8474,-146.446	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/0:129:129,0:129:4586:0:0:0,-38.8329,-412.905	0/1:58:28,30:28:989:30:1064:-78.6114,0,-71.8623	0/1:61:49,12:49:1742:12:432:-20.8584,0,-138.7	0/0:213:212,1:212:7597:1:36:0,-60.5211,-680.165	0/0:147:147,0:147:5276:0:0:0,-44.2514,-474.946	0/0:89:89,0:89:3191:0:0:0,-26.7917,-287.412	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/0:128:127,1:127:4536:1:36:0,-34.9336,-404.807	0/0:141:141,0:141:5002:0:0:0,-42.4452,-450.326	0/0:203:203,0:203:7251:0:0:0,-61.1091,-652.644	0/0:53:53,0:53:1870:0:0:0,-15.9546,-168.578	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/0:84:84,0:84:2977:0:0:0,-25.2865,-268.163	0/1:18:14,4:14:496:4:136:-7.15642,0,-39.5557	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:65:64,1:64:2288:1:32:0,-16.3676,-202.982	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:49:34,15:34:1215:15:532:-33.4626,0,-94.9053	0/1:39:16,23:16:572:23:824:-62.7431,0,-40.0733	0/0:220:220,0:220:7864:0:0:0,-66.2266,-707.786	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595
chr06	3680030	.	A	G	28692.2	PASS	AB=0.512392;ABP=7.31557;AC=41;AF=0.218085;AN=188;AO=1683;CIGAR=1X;DP=8361;DPB=8361;DPRA=1.12938;EPP=3562.68;EPPR=13981.1;GTI=0;LEN=1;MEANALT=1.04167;MQM=59.8479;MQMR=59.9873;NS=94;NUMALT=1;ODDS=0.134009;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60260;QR=220677;RO=6675;RPL=12;RPP=3554.11;RPPR=13989.7;RPR=1671;RUN=1;SAF=1682;SAP=3648.92;SAR=1;SRF=6674;SRP=14488.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:17,14:17:585:14:489:-35.007,0,-43.64	0/0:79:79,0:79:2426:0:0:0,-23.7814,-218.57	0/1:122:61,61:61:2027:61:2180:-159.74,0,-145.961	0/0:169:167,2:167:5627:2:68:0,-44.4409,-500.126	0/1:25:13,12:13:430:12:432:-31.6954,0,-31.4896	0/1:27:10,17:10:333:17:593:-45.5668,0,-22.1638	0/0:172:171,1:171:5499:1:36:0,-48.1789,-491.446	0/1:71:30,41:30:1042:41:1476:-111.763,0,-72.7123	0/1:87:40,47:40:1356:47:1688:-124.478,0,-96.1388	0/1:60:34,26:34:1152:26:932:-65.9783,0,-85.9129	0/1:94:50,44:50:1705:44:1580:-114.195,0,-125.429	0/0:123:122,1:122:4024:1:36:0,-33.4284,-358.748	0/1:135:63,72:63:2116:72:2592:-192.889,0,-150.058	0/1:115:41,74:41:1437:74:2648:-203.941,0,-95.0053	0/0:104:104,0:104:3406:0:0:0,-31.3071,-306.744	0/1:108:55,53:55:1697:53:1904:-139.126,0,-120.474	0/0:45:45,0:45:1529:0:0:0,-13.5463,-137.891	0/0:55:55,0:55:1930:0:0:0,-16.5566,-173.973	0/0:42:42,0:42:1465:0:0:0,-12.6433,-132.142	0/0:340:340,0:340:10259:0:0:0,-102.35,-923.298	0/1:138:67,71:67:2252:71:2521:-185.598,0,-161.391	0/0:88:88,0:88:2765:0:0:0,-26.4906,-249.072	0/1:84:46,38:46:1516:38:1353:-96.7827,0,-111.428	0/1:56:23,33:23:790:33:1184:-89.6927,0,-54.5548	0/1:80:43,37:43:1355:37:1328:-95.7398,0,-98.1389	0/0:167:166,0:166:5669:0:0:0,-49.971,-510.121	0/0:222:221,1:221:7143:1:36:0,-63.2304,-639.348	0/0:29:29,0:29:961:0:0:0,-8.72987,-86.7856	0/1:281:155,126:155:5005:126:4524:-322.037,0,-366.011	0/1:100:57,43:57:1972:43:1548:-109.51,0,-147.64	0/0:102:102,0:102:3366:0:0:0,-30.7051,-303.147	0/1:5:3,2:3:89:2:72:-5.33157,0,-6.79921	0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2943	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	0/0:4:4,0:4:125:0:0:0,-1.20412,-11.5586	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/1:273:119,153:119:3908:153:5455:-408.838,0,-269.672	0/0:57:57,0:57:1922:0:0:0,-17.1587,-173.247	0/0:67:67,0:67:2357:0:0:0,-20.169,-212.388	0/0:1:1,0:1:21:0:0:0,-0.30103,-2.09995	0/0:127:126,1:126:4081:1:36:0,-34.6325,-363.873	0/0:52:52,0:52:1814:0:0:0,-15.6536,-163.538	0/1:104:51,53:51:1700:53:1900:-139.909,0,-121.963	0/1:79:32,47:32:1050:47:1692:-128.785,0,-71.0088	0/1:61:28,33:28:981:33:1180:-86.3361,0,-70.2382	0/1:66:35,31:35:1180:31:1116:-80.8837,0,-86.6254	0/1:101:53,48:53:1742:48:1716:-124.322,0,-126.641	0/0:103:103,0:103:3395:0:0:0,-31.0061,-305.755	0/0:105:105,0:105:3587:0:0:0,-31.6081,-323.032	0/1:109:55,54:55:1863:54:1932:-141.344,0,-135.124	0/1:70:32,38:32:1072:38:1364:-101.989,0,-75.7038	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:136:134,2:134:4317:2:72:0,-34.1058,-381.87	0/0:113:113,0:113:3829:0:0:0,-34.0164,-344.803	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:99:59,40:59:1957:40:1434:-99.5524,0,-146.589	0/0:23:23,0:23:756:0:0:0,-6.92369,-68.3417	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:104:58,46:58:1910:46:1637:-116.31,0,-140.854	0/0:128:119,9:119:4123:9:315:0,-9.84461,-342.568	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:133:133,0:133:4287:0:0:0,-40.037,-386.001	0/0:82:79,3:79:2684:3:108:0,-14.6093,-231.723	0/0:64:64,0:64:2185:0:0:0,-19.2659,-196.91	0/0:70:70,0:70:2309:0:0:0,-21.0721,-208.054	0/0:129:127,2:127:4227:2:72:0,-31.9961,-373.771	0/0:152:152,0:152:5083:0:0:0,-45.7566,-457.615	0/0:79:79,0:79:2737:0:0:0,-23.7814,-246.569	0/0:66:66,0:66:2167:0:0:0,-19.868,-195.283	0/0:69:69,0:69:2384:0:0:0,-20.7711,-214.814	0/1:24:10,14:10:341:14:504:-38.4734,0,-23.793	0/0:142:142,0:142:4468:0:0:0,-42.7463,-402.284	0/1:97:61,36:61:2059:36:1294:-87.5594,0,-156.371	0/1:75:41,34:41:1400:34:1224:-87.8898,0,-103.58	0/0:157:157,0:157:5036:0:0:0,-47.2617,-453.389	0/0:51:51,0:51:1635:0:0:0,-15.3525,-147.416	0/0:79:79,0:79:2593:0:0:0,-23.7814,-233.608	0/1:6:3,3:3:93:3:104:-7.89663,0,-6.87055	0/0:84:84,0:84:2821:0:0:0,-25.2865,-254.125	0/0:148:148,0:148:4631:0:0:0,-44.5524,-416.95	0/0:166:166,0:166:5487:0:0:0,-49.971,-493.963	0/0:64:64,0:64:2197:0:0:0,-19.2659,-197.989	0/0:114:114,0:114:3752:0:0:0,-34.3174,-337.874	0/1:59:23,36:23:785:36:1292:-98.823,0,-53.1319	0/0:113:113,0:113:3982:0:0:0,-34.0164,-358.573	0/1:31:18,13:18:625:13:464:-32.7656,0,-47.2406	0/0:85:85,0:85:2794:0:0:0,-25.5875,-251.691	0/0:81:81,0:81:2729:0:0:0,-24.3834,-245.847	0/0:101:101,0:101:3511:0:0:0,-30.404,-316.173	0/1:126:53,73:53:1832:73:2620:-198.117,0,-127.223	0/1:117:31,85:31:976:85:3041:-238.64,0,-52.8454	0/0:94:94,0:94:3130:0:0:0,-28.2968,-281.918	0/0:127:127,0:127:4269:0:0:0,-38.2308,-384.391
chr06	3797271	.	T	A	94009.5	PASS	AB=0.501566;ABP=3.0511;AC=143;AF=0.760638;AN=188;AO=4364;CIGAR=1X;DP=5327;DPB=5327;DPRA=57.2688;EPP=9479.32;EPPR=2094.14;GTI=3;LEN=1;MEANALT=1;MQM=59.9487;MQMR=59.9875;NS=94;NUMALT=1;ODDS=1.14532;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155429;QR=34210;RO=963;RPL=0;RPP=9479.32;RPPR=2094.14;RPR=4364;RUN=1;SAF=0;SAP=9479.32;SAR=4364;SRF=0;SRP=2094.14;SRR=963;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:20,23:20:712:23:816:-60.8174,0,-51.4624	1/1:99:0,99:0:0:99:3532:-318.09,-29.802,0	0/1:61:34,27:34:1220:27:972:-69.4351,0,-91.7416	1/1:106:0,106:0:0:106:3788:-341.119,-31.9092,0	0/1:56:29,27:29:1028:27:972:-70.9402,0,-75.9754	0/1:46:25,21:25:896:21:756:-54.5198,0,-67.113	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	0/1:111:66,45:66:2348:45:1596:-110.516,0,-178.165	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:63:30,33:30:1052:33:1172:-86.8226,0,-76.0228	0/1:14:11,3:11:396:3:104:-5.48839,0,-31.7683	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:28:7,21:7:252:21:739:-58.4035,0,-14.6001	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:10:5,5:5:176:5:171:-12.7152,0,-13.1747	1/1:19:0,19:0:0:19:668:-60.4457,-5.71957,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:127:0,127:0:0:127:4497:-404.897,-38.2308,0	0/1:64:36,28:36:1288:28:987:-69.8771,0,-96.9577	1/1:112:0,112:0:0:112:3980:-358.389,-33.7154,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:68:23,45:23:816:45:1595:-123.369,0,-53.2917	0/1:35:20,15:20:698:15:528:-37.3153,0,-52.6054	1/1:232:0,232:0:0:232:8244:-741.965,-69.839,0	1/1:147:0,147:0:0:147:5248:-472.397,-44.2514,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:180:97,83:97:3419:83:2957:-212.132,0,-253.74	0/1:108:57,51:57:2044:51:1809:-130.578,0,-151.721	1/1:49:0,49:0:0:49:1724:-155.442,-14.7505,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:38:14,24:14:504:24:856:-65.922,0,-34.259	1/1:170:0,170:0:0:170:6072:-546.582,-51.1751,0	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:95:0,95:0:0:95:3377:-304.146,-28.5979,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:141:68,73:68:2382:73:2600:-191.804,0,-172.183	0/1:8:3,5:3:108:5:172:-13.4097,0,-7.66693	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:46:13,33:13:449:33:1179:-92.5698,0,-26.8901	0/1:114:57,57:57:2044:57:2032:-148.835,0,-149.914	1/1:147:0,147:0:0:147:5231:-470.863,-44.2514,0	1/1:69:0,69:0:0:69:2456:-221.295,-20.7711,0	0/1:86:41,45:41:1461:45:1596:-118.042,0,-105.895	0/1:128:59,69:59:2083:69:2464:-183.454,0,-149.205	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:102:0,102:0:0:102:3644:-328.154,-30.7051,0	1/1:28:0,28:0:0:28:996:-89.9541,-8.42884,0	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	0/1:98:44,54:44:1565:54:1940:-145.375,0,-111.639	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/1:48:31,17:31:1096:17:589:-38.8839,0,-84.5005	1/1:64:0,64:0:0:64:2241:-201.947,-19.2659,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:101:0,101:0:0:101:3597:-323.936,-30.404,0	1/1:171:1,170:1:36:170:6039:-540.018,-47.8779,0	1/1:41:0,41:0:0:41:1456:-131.324,-12.3422,0	1/1:61:1,60:1:36:60:2140:-189.27,-14.7646,0	1/1:134:3,131:3:104:131:4676:-411.3,-30.6352,0	1/1:76:2,74:2:57:74:2639:-232.343,-17.465,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:51:0,51:0:0:51:1812:-163.362,-15.3525,0	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	1/1:105:0,105:0:0:105:3756:-338.24,-31.6082,0	0/1:21:14,7:14:500:7:252:-16.7073,0,-39.0145	0/1:86:49,37:49:1740:37:1316:-92.8532,0,-130.996	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	1/1:141:0,141:0:0:141:5036:-453.363,-42.4452,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:61:0,61:0:0:61:2169:-195.475,-18.3628,0	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	1/1:144:0,144:0:0:144:5152:-463.822,-43.3483,0	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:13:2,11:2:72:11:392:-31.7067,0,-2.92333	1/1:36:0,36:0:0:36:1261:-113.79,-10.8371,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/1:12:6,6:6:216:6:203:-14.9888,0,-16.1782	1/1:68:0,68:0:0:68:2393:-215.618,-20.47,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0
chr06	3821138	.	A	G	201620	PASS	AB=0.526846;ABP=29.71;AC=143;AF=0.768817;AN=186;AO=9362;CIGAR=1X;DP=11396;DPB=11396;DPRA=0;EPP=20332.3;EPPR=4408.93;GTI=4;LEN=1;MEANALT=1.04301;MQM=59.9843;MQMR=59.999;NS=93;NUMALT=1;ODDS=6.69701;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=333375;QR=71385;RO=2029;RPL=0;RPP=20332.3;RPPR=4408.93;RPR=9362;RUN=1;SAF=9362;SAP=20332.3;SAR=0;SRF=2029;SRP=4408.93;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:24,25:24:829:25:877:-64.4947,0,-60.1737	1/1:177:1,176:1:36:176:6290:-562.593,-49.684,0	0/1:140:61,79:61:2164:79:2817:-211.624,0,-152.883	1/1:352:1,351:1:36:351:12477:-1119.06,-102.364,0	0/1:111:67,44:67:2345:44:1567:-107.907,0,-177.895	0/1:49:20,29:20:716:29:1040:-79.1639,0,-50.0172	1/1:141:0,141:0:0:141:5032:-453.027,-42.4452,0	0/1:207:124,83:124:4320:83:2939:-202.429,0,-326.668	0/1:126:66,60:66:2283:60:2118:-152.956,0,-167.799	0/1:113:40,73:40:1416:73:2600:-200.231,0,-93.721	0/1:35:18,17:18:640:17:612:-44.8774,0,-47.3933	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	0/1:71:32,39:32:1136:39:1374:-102.582,0,-81.1758	0/1:73:28,45:28:1000:45:1616:-123.755,0,-68.3402	1/1:84:0,84:0:0:84:3020:-272.028,-25.2865,0	0/1:45:24,21:24:856:21:756:-54.8209,0,-63.8148	1/1:109:0,109:0:0:109:3899:-351.103,-32.8123,0	1/1:74:0,74:0:0:74:2659:-239.556,-22.2762,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:242:0,242:0:0:242:8584:-772.559,-72.8493,0	0/1:219:95,124:95:3357:124:4403:-330.517,0,-236.423	1/1:179:0,179:0:0:179:6388:-575.012,-53.8844,0	0/1:116:43,72:43:1532:72:2505:-190.718,0,-103.195	0/1:169:75,94:75:2562:94:3334:-249.402,0,-179.951	0/1:106:40,66:40:1420:66:2368:-181.469,0,-96.1882	1/1:448:0,448:0:0:448:16000:-1439.58,-134.861,0	1/1:309:0,309:0:0:309:11018:-991.517,-93.0183,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:270:113,157:113:3980:157:5571:-420.237,0,-277.119	0/1:134:47,87:47:1680:87:3090:-237.989,0,-111.149	1/1:169:0,169:0:0:169:6020:-541.904,-50.8741,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:251:125,126:125:4419:126:4502:-329.787,0,-322.324	1/1:204:1,203:1:21:203:7245:-650,-59.3102,0	1/1:50:0,50:0:0:50:1766:-159.219,-15.0515,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:173:0,171:0:0:171:6048:-544.065,-51.4761,0	1/1:45:0,45:0:0:45:1597:-144.018,-13.5464,0	0/1:178:98,80:98:3476:80:2843:-202.523,0,-259.471	0/1:108:54,54:54:1891:54:1894:-138.223,0,-137.951	0/1:98:49,49:49:1703:49:1736:-127.021,0,-124.049	0/1:130:59,71:59:2050:71:2536:-189.358,0,-145.635	0/1:135:73,62:73:2600:62:2216:-159.065,0,-193.61	1/1:228:1,227:1:36:227:8017:-717.954,-65.0366,0	1/1:161:0,161:0:0:161:5750:-517.618,-48.4658,0	0/1:197:91,106:91:3225:106:3766:-279.835,0,-231.17	0/1:181:83,97:83:2856:97:3431:-254.452,0,-202.733	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	1/1:175:1,174:1:36:174:6209:-555.309,-49.082,0	1/1:51:0,51:0:0:51:1798:-162.098,-15.3525,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:132:69,63:69:2369:63:2209:-159.336,0,-173.727	1/1:87:0,86:0:0:86:3069:-276.078,-25.8886,0	0/1:23:10,13:10:352:13:453:-34.1759,0,-25.0945	0/1:22:4,18:4:144:18:644:-51.6679,0,-6.69096	0/1:101:52,49:52:1848:49:1737:-126.209,0,-136.196	1/1:102:1,101:1:36:101:3609:-321.416,-27.1068,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	1/1:321:0,321:0:0:321:11475:-1032.62,-96.6306,0	1/1:275:1,274:1:36:274:9822:-880.321,-79.185,0	1/1:93:0,93:0:0:93:3316:-298.659,-27.9958,0	1/1:136:0,136:0:0:136:4836:-435.393,-40.9401,0	1/1:253:0,253:0:0:253:8986:-808.722,-76.1606,0	1/1:106:0,106:0:0:106:3739:-336.22,-31.9092,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0	1/1:77:0,77:0:0:77:2749:-247.65,-23.1793,0	0/1:33:24,9:24:860:9:309:-18.2067,0,-67.7878	1/1:56:1,55:1:21:55:1964:-174.935,-14.7577,0	0/1:73:30,43:30:1049:43:1540:-116.918,0,-72.743	0/1:177:74,103:74:2609:103:3661:-276.412,0,-181.776	1/1:249:0,249:0:0:249:8910:-801.882,-74.9565,0	1/1:158:0,158:0:0:158:5607:-504.752,-47.5627,0	1/1:140:2,138:2:68:138:4929:-437.302,-35.6865,0	0/1:20:9,11:9:309:11:392:-29.5995,0,-22.1201	1/1:150:1,149:1:36:149:5287:-472.369,-41.5562,0	1/1:180:0,180:0:0:180:6389:-575.077,-54.1854,0	1/1:233:0,233:0:0:233:8304:-747.369,-70.14,0	1/1:107:1,106:1:36:106:3762:-335.178,-28.6119,0	1/1:80:0,80:0:0:80:2853:-257.007,-24.0824,0	0/1:113:54,59:54:1920:59:2116:-156.692,0,-139.061	1/1:187:0,187:0:0:187:6654:-598.94,-56.2926,0	0/1:53:26,27:26:928:27:957:-70.4901,0,-67.8837	1/1:88:0,88:0:0:88:3140:-282.827,-26.4906,0	1/1:67:0,67:0:0:67:2393:-215.625,-20.169,0	1/1:30:0,30:0:0:30:1061:-95.7994,-9.0309,0	0/1:65:32,33:32:1152:33:1180:-86.9411,0,-84.4232	0/1:88:57,31:57:2027:31:1108:-73.5404,0,-156.211	1/1:177:1,176:1:36:176:6243:-558.352,-49.684,0	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0
chr06	3829841	.	C	T	137788	PASS	AB=0.488955;ABP=6.55985;AC=145;AF=0.771277;AN=188;AO=6465;CIGAR=1X;DP=8186;DPB=8186;DPRA=0;EPP=14015.5;EPPR=3737.94;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.8353;MQMR=59.9773;NS=94;NUMALT=1;ODDS=1.14972;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229772;QR=61149;RO=1720;RPL=6462;RPP=14015.5;RPPR=3737.94;RPR=3;RUN=1;SAF=6465;SAP=14041.6;SAR=0;SRF=1720;SRP=3737.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:28,20:28:1008:20:720:-50.6793,0,-76.5869	1/1:136:0,136:0:0:136:4863:-437.514,-40.9401,0	0/1:147:66,81:66:2344:81:2899:-216.894,0,-166.969	1/1:140:0,140:0:0:140:4939:-444.632,-42.1442,0	0/1:78:45,33:45:1608:33:1168:-81.9469,0,-121.53	0/1:89:56,33:56:1985:33:1176:-79.3376,0,-152.131	1/1:137:0,137:0:0:137:4851:-436.745,-41.2411,0	0/1:134:64,69:64:2292:69:2460:-181.25,0,-166.145	0/1:88:47,41:47:1658:41:1445:-103.853,0,-123.002	0/1:85:41,44:41:1468:44:1572:-116.184,0,-106.824	0/1:26:19,7:19:680:7:252:-15.2022,0,-53.7024	1/1:50:0,50:0:0:50:1750:-157.78,-15.0515,0	0/1:43:21,22:21:752:22:752:-55.0463,0,-55.062	0/1:53:32,21:32:1111:21:728:-49.8831,0,-84.3388	1/1:34:0,34:0:0:34:1215:-109.656,-10.235,0	0/1:44:27,17:27:956:17:605:-41.5357,0,-73.1104	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:28:0,28:0:0:28:995:-89.864,-8.42884,0	1/1:28:1,27:1:36:27:963:-83.3877,-4.83057,0	1/1:151:0,151:0:0:151:5344:-480.682,-45.4555,0	0/1:134:72,62:72:2535:62:2177:-155.855,0,-188.059	1/1:159:0,159:0:0:159:5672:-510.57,-47.8638,0	0/1:98:45,53:45:1604:53:1900:-141.777,0,-115.149	0/1:161:92,69:92:3300:69:2446:-171.841,0,-248.753	0/1:102:64,38:64:2279:38:1339:-88.2967,0,-174.667	1/1:238:0,238:0:0:238:8477:-762.799,-71.6451,0	1/1:179:0,179:0:0:179:6400:-576.09,-53.8844,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:249:109,140:109:3897:140:4988:-373.827,0,-275.966	0/1:119:55,64:55:1967:64:2296:-171.079,0,-141.482	1/1:140:1,139:1:36:139:4904:-437.917,-38.5459,0	0/1:18:5,13:5:180:13:468:-37.0411,0,-11.1335	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:15:0,15:0:0:15:517:-46.767,-4.51545,0	0/1:123:66,57:66:2349:57:2043:-147.114,0,-174.641	1/1:208:0,208:0:0:208:7400:-666.005,-62.6142,0	1/1:31:0,31:0:0:31:1086:-98.0099,-9.33193,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:119:0,119:0:0:119:4237:-381.51,-35.8226,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:204:92,112:92:3255:112:3964:-295.308,0,-231.76	0/1:35:22,13:22:783:13:451:-30.369,0,-60.2569	0/1:35:22,13:22:779:13:468:-31.9236,0,-59.896	0/1:117:60,57:60:2118:57:2011:-146.042,0,-155.62	0/1:102:52,50:52:1826:50:1775:-129.169,0,-133.912	1/1:106:0,106:0:0:106:3763:-338.851,-31.9092,0	1/1:134:0,134:0:0:134:4768:-429.26,-40.338,0	0/1:91:40,51:40:1428:51:1806:-135.427,0,-101.424	0/1:176:85,91:85:3031:91:3213:-236.413,0,-220.039	0/1:11:6,5:6:208:5:176:-12.8737,0,-15.7478	1/1:177:0,177:0:0:177:6302:-567.084,-53.2823,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:15:3,12:3:108:12:424:-33.981,0,-5.55972	0/1:103:56,47:56:2012:47:1655:-118.22,0,-150.347	1/1:81:0,81:0:0:81:2903:-261.503,-24.3834,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:24:7,17:7:248:17:612:-48.1324,0,-15.4395	0/1:83:35,48:35:1248:48:1701:-128.388,0,-87.6394	1/1:90:1,89:1:36:89:3191:-283.121,-23.4944,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	1/1:104:0,104:0:0:104:3665:-330.05,-31.3071,0	1/1:188:2,186:2:72:186:6580:-584.63,-49.7569,0	1/1:89:1,88:1:36:88:3144:-279.588,-23.1934,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:311:1,310:1:32:310:11065:-992.465,-90.421,0	1/1:172:0,172:0:0:172:6127:-551.518,-51.7772,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:83:0,83:0:0:83:2936:-263.683,-24.9855,0	1/1:41:0,41:0:0:41:1437:-129.624,-12.3422,0	0/1:15:10,5:10:347:5:171:-11.1921,0,-27.0482	1/1:170:1,169:1:36:169:6016:-537.861,-47.5768,0	0/1:62:34,28:34:1205:28:997:-71.38,0,-90.09	0/1:186:89,97:89:3159:97:3451:-254.807,0,-228.542	1/1:154:0,154:0:0:154:5492:-494.408,-46.3586,0	1/1:112:0,112:0:0:112:4012:-361.269,-33.7154,0	1/1:74:0,74:0:0:74:2614:-235.508,-22.2762,0	0/1:13:8,5:8:288:5:171:-11.8121,0,-22.3531	1/1:71:0,71:0:0:71:2506:-225.649,-21.3731,0	1/1:89:0,89:0:0:89:3170:-285.524,-26.7917,0	1/1:177:0,177:0:0:177:6319:-568.804,-53.2823,0	1/1:72:0,72:0:0:72:2566:-231.189,-21.6742,0	1/1:33:0,33:0:0:33:1158:-104.524,-9.93399,0	0/1:55:27,28:27:940:28:982:-72.135,0,-68.3542	1/1:84:1,83:1:36:83:2959:-262.945,-21.6882,0	0/1:39:24,15:24:860:15:531:-36.3817,0,-65.9817	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	1/1:53:0,53:0:0:53:1889:-170.286,-15.9546,0	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	0/1:69:34,35:34:1198:35:1242:-91.2836,0,-87.3529	0/1:52:36,16:36:1283:16:548:-33.9877,0,-100.119	1/1:76:0,76:0:0:76:2700:-243.244,-22.8783,0	1/1:53:0,53:0:0:53:1874:-168.938,-15.9546,0
chr06	3829851	.	A	G	134912	PASS	AB=0.480083;ABP=14.601;AC=145;AF=0.771277;AN=188;AO=6359;CIGAR=1X;DP=8122;DPB=8122;DPRA=0;EPP=13811.4;EPPR=3818.29;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.8869;MQMR=59.9351;NS=94;NUMALT=1;ODDS=1.76135;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225805;QR=62923;RO=1757;RPL=6359;RPP=13811.4;RPPR=3818.29;RPR=0;RUN=1;SAF=6359;SAP=13811.4;SAR=0;SRF=1757;SRP=3818.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:32,20:32:1148:20:716:-49.1142,0,-87.9065	1/1:135:0,133:0:0:133:4730:-425.644,-40.037,0	0/1:146:65,80:65:2317:80:2868:-214.348,0,-164.78	1/1:138:0,138:0:0:138:4868:-438.144,-41.5421,0	0/1:79:47,32:47:1692:32:1123:-77.5958,0,-128.785	0/1:91:59,32:59:2099:32:1139:-75.4237,0,-161.785	1/1:136:0,136:0:0:136:4831:-434.946,-40.9401,0	0/1:138:67,71:67:2412:71:2530:-186.029,0,-175.794	0/1:93:51,42:51:1836:42:1499:-107.208,0,-137.511	0/1:85:41,44:41:1472:44:1572:-116.184,0,-107.187	0/1:27:19,8:19:684:8:279:-17.3197,0,-53.7625	1/1:51:0,51:0:0:51:1759:-158.587,-15.3525,0	0/1:46:24,22:24:856:22:776:-56.3115,0,-63.5137	0/1:52:31,21:31:1099:21:728:-50.1841,0,-83.5659	1/1:34:0,34:0:0:34:1184:-106.862,-10.235,0	0/1:43:26,17:26:936:17:573:-38.9431,0,-71.6152	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	1/1:29:1,28:1:36:28:996:-86.3566,-5.1316,0	1/1:148:0,148:0:0:148:5242:-471.918,-44.5524,0	0/1:132:74,58:74:2660:58:2076:-147.375,0,-199.719	1/1:160:1,159:1:36:159:5634:-503.572,-44.5665,0	0/1:98:45,53:45:1620:53:1883:-140.246,0,-116.589	0/1:157:90,67:90:3228:67:2391:-168.185,0,-243.48	0/1:101:65,36:65:2324:36:1277:-84.2704,0,-179.016	1/1:235:0,234:0:0:234:8341:-750.406,-70.441,0	1/1:176:0,176:0:0:176:6242:-561.875,-52.9813,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:254:115,137:115:4111:137:4888:-363.567,0,-293.955	0/1:120:56,64:56:2016:64:2292:-170.418,0,-145.588	1/1:137:1,136:1:36:136:4836:-431.796,-37.6428,0	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:4:1,3:1:36:3:99:-8.03246,0,-2.39415	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	0/1:126:68,58:68:2444:58:2063:-148.011,0,-182.285	1/1:205:0,205:0:0:205:7290:-656.092,-61.7112,0	1/1:32:0,32:0:0:32:1108:-99.9945,-9.63296,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:119:0,119:0:0:119:4225:-380.431,-35.8226,0	1/1:18:0,18:0:0:18:632:-57.2068,-5.41854,0	0/1:201:93,108:93:3321:108:3819:-282.971,0,-238.586	0/1:34:22,12:22:792:12:428:-28.6238,0,-61.3707	0/1:36:23,13:23:828:13:455:-30.4449,0,-64.007	0/1:116:61,55:61:2184:55:1958:-141.575,0,-161.862	0/1:104:53,51:53:1896:51:1811:-131.964,0,-139.611	1/1:102:0,102:0:0:102:3643:-327.946,-30.7051,0	1/1:132:0,132:0:0:132:4673:-420.729,-39.736,0	0/1:91:41,50:41:1464:50:1792:-134.169,0,-104.662	0/1:176:89,87:89:3188:87:3098:-226.065,0,-234.162	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:167:0,167:0:0:167:5979:-538.215,-50.272,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/1:107:58,49:58:2061:49:1748:-125.386,0,-153.549	1/1:77:0,77:0:0:77:2752:-247.918,-23.1793,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:24:8,16:8:284:16:576:-44.8939,0,-18.6323	0/1:83:35,48:35:1252:48:1700:-128.299,0,-87.9996	1/1:87:1,86:1:36:86:3044:-270.55,-22.5913,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:103:0,103:0:0:103:3616:-325.631,-31.0061,0	1/1:184:2,182:2:72:182:6440:-572.213,-48.5528,0	1/1:84:1,83:1:36:83:2961:-263.124,-21.6882,0	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:303:1,302:1:36:302:10753:-964.005,-87.6138,0	1/1:169:0,169:0:0:169:5992:-539.386,-50.8741,0	1/1:7:0,7:0:0:7:245:-22.3902,-2.10721,0	1/1:82:0,82:0:0:82:2932:-264.109,-24.6845,0	1/1:40:0,40:0:0:40:1414:-127.556,-12.0412,0	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.5925	1/1:170:1,169:1:36:169:5967:-533.506,-47.5768,0	0/1:62:34,28:34:1212:28:991:-70.8397,0,-90.7225	0/1:184:89,95:89:3192:95:3396:-250.466,0,-232.113	1/1:156:0,156:0:0:156:5553:-499.893,-46.9607,0	1/1:110:0,110:0:0:110:3886:-349.935,-33.1133,0	1/1:76:0,76:0:0:76:2677:-241.174,-22.8783,0	0/1:13:8,5:8:284:5:171:-11.8121,0,-21.989	1/1:68:0,68:0:0:68:2409:-217.055,-20.47,0	1/1:86:1,85:1:36:85:3036:-269.872,-22.2903,0	1/1:177:0,177:0:0:177:6300:-567.092,-53.2823,0	1/1:66:0,66:0:0:66:2315:-208.607,-19.868,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:55:27,28:27:959:28:1008:-74.4797,0,-70.0687	1/1:84:1,83:1:36:83:2938:-261.057,-21.6882,0	0/1:38:23,15:23:816:15:540:-37.4974,0,-62.3226	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:23:0,23:0:0:23:811:-73.31,-6.92369,0	0/1:70:35,35:35:1256:35:1243:-91.0734,0,-92.2732	0/1:51:35,16:35:1256:16:553:-34.7415,0,-97.9928	1/1:76:0,76:0:0:76:2679:-241.354,-22.8783,0	1/1:50:0,50:0:0:50:1772:-159.76,-15.0515,0
chr06	3829858	.	GTTTTTT	GTTGTTT,CTTGTTG	164578	PASS	AB=0.497474,0.493095;ABP=3.17486,4.23975;AC=149,39;AF=0.792553,0.207447;AN=188;AO=6230,1474;CIGAR=3M1X3M,1X2M1X2M1X;DP=7808;DPB=7811;DPRA=0,0.951439;EPP=13531.3,3203.76;EPPR=61.6401;GTI=3;LEN=1,7;MEANALT=2.18085,2.53333;MQM=59.9108,59.9817;MQMR=55;NS=94;NUMALT=2;ODDS=1.51318;PAIRED=0,0;PAIREDR=0;PAO=6.5,8;PQA=230,280;PQR=230;PRO=6.5;QA=221138,50219;QR=830;RO=27;RPL=6230,1474;RPP=13531.3,3203.76;RPPR=61.6401;RPR=0,0;RUN=1,1;SAF=6230,1474;SAP=13531.3,3203.76;SAR=0,0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:51:0,21,30:0:0:21,30:752,1003:-142.849,-81.5419,-75.2202,-61.6552,0,-52.6243	1/1:131:0,130,0:0:0:130,0:4643,0:-417.693,-39.1339,0,-417.693,-39.1339,-417.693	1/2:146:2,76,67:2:58:76,67:2707,2285:-400.876,-180.83,-162.567,-216.081,0,-200.526	1/1:139:0,137,0:0:0:137,0:4853,0:-436.696,-41.2411,0,-436.696,-41.2411,-436.696	1/2:78:1,33,44:1:36:33,44:1160,1510:-213.767,-119.646,-112.65,-91.4727,0,-81.165	1/2:91:0,32,57:0:0:32,57:1148,1926:-249.773,-156.127,-146.494,-93.6676,0,-76.5089	1/1:137:0,135,0:0:0:135,0:4815,0:-433.142,-40.6391,0,-433.142,-40.6391,-433.142	1/2:136:0,66,68:0:0:66,68:2336,2299:-376.478,-186.462,-166.594,-190.123,0,-169.653	1/2:87:1,36,49:1:29:36,49:1279,1669:-237.038,-133.113,-124.581,-101.945,0,-89.4986	1/2:49:0,42,6:0:0:42,6:1480,197:-136.472,-15.9476,-3.30434,-120.556,0,-118.75	1/2:9:0,8,1:0:0:8,1:284,34:-26.2514,-3.09788,-0.689641,-23.4951,0,-23.1941	1/1:47:0,47,0:0:0:47,0:1659,0:-149.597,-14.1484,0,-149.597,-14.1484,-149.597	1/2:43:0,19,22:0:0:19,22:684,738:-115.703,-59.8767,-54.1571,-55.9329,0,-49.3103	1/2:53:0,19,33:0:0:19,33:672,1103:-144.123,-89.3819,-83.6623,-54.8321,0,-44.8981	1/1:34:0,34,0:0:0:34,0:1215,0:-109.656,-10.235,0,-109.656,-10.235,-109.656	1/2:44:0,16,25:0:0:16,25:560,865:-115.864,-70.2996,-65.4831,-45.5708,0,-38.0451	1/1:33:0,31,0:0:0:31,0:1099,0:-98.9022,-9.33193,0,-98.9022,-9.33193,-98.9022	1/1:28:1,27,0:1:24:27,0:956,0:-83.9558,-6.02895,0,-84.2569,-8.12781,-86.1117	1/1:28:0,27,0:0:0:27,0:964,0:-86.7171,-8.12781,0,-86.7171,-8.12781,-86.7171	1/1:146:1,144,0:1:26:144,0:5095,0:-456.74,-42.0985,0,-457.041,-43.3483,-458.378	1/2:135:0,67,68:0:0:67,68:2349,2331:-380.415,-189.262,-169.093,-191.18,0,-170.709	1/1:159:1,158,0:1:36:158,0:5593,0:-499.9,-44.2655,0,-500.201,-47.5627,-503.139	1/1:54:0,49,3:0:0:49,3:1747,89:-157.217,-14.7505,0,-150.116,-7.63556,-149.212	1/2:157:0,67,90:0:0:67,90:2388,3132:-449.545,-255.019,-234.85,-194.878,0,-167.786	1/2:103:1,38,64:1:36:38,64:1355,2170:-283.164,-173.004,-164.503,-107.513,0,-91.1849	1/1:233:0,230,0:0:0:230,0:8128,0:-731.071,-69.2369,0,-731.071,-69.2369,-731.071	1/1:178:1,174,0:1:35:174,0:6190,0:-553.729,-49.5215,0,-554.03,-52.3792,-556.878	1/1:12:0,12,0:0:0:12,0:419,0:-38.0427,-3.61236,0,-38.0427,-3.61236,-38.0427	1/2:247:0,134,113:0:0:134,113:4754,3884:-702.98,-315.691,-275.353,-387.578,0,-353.561	1/2:116:0,63,53:0:0:63,53:2235,1825:-330.616,-148.516,-129.552,-182.39,0,-166.435	1/1:136:0,136,0:0:0:136,0:4820,0:-433.838,-40.9401,0,-433.838,-40.9401,-433.838	1/2:16:0,11,5:0:0:11,5:396,179:-47.2682,-14.9552,-11.6439,-32.6714,0,-31.1663	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:4:0,3,1:0:0:3,1:104,35:-11.6483,-3.1976,-2.29451,-8.79971,0,-8.49868	1/1:15:0,14,0:0:0:14,0:496,0:-44.4451,-4.21442,0,-44.4451,-4.21442,-44.4451	1/2:124:0,57,67:0:0:57,67:2005,2320:-352.107,-188.893,-171.735,-163.563,0,-143.394	1/1:199:0,195,0:0:0:195,0:6947,0:-624.792,-58.7009,0,-624.792,-58.7009,-624.792	1/1:28:0,27,0:0:0:27,0:955,0:-85.9822,-8.12781,0,-85.9822,-8.12781,-85.9822	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:119:1,115,0:1:36:115,0:4102,0:-365.847,-31.6536,0,-366.148,-34.6185,-369.085	1/1:18:0,17,0:0:0:17,0:603,0:-54.24,-5.11751,0,-54.24,-5.11751,-54.24	1/2:204:1,112,91:1:28:112,91:3981,3085:-571.818,-247.972,-216.473,-321.976,0,-296.799	1/1:14:1,12,1:1:21:12,1:415,28:-35.5299,-2.05967,0,-33.6172,-1.35858,-34.8935	1/2:16:0,13,3:0:0:13,3:460,94:-45.3691,-7.868,-3.95461,-37.822,0,-36.9189	1/2:115:0,54,61:0:0:54,61:1944,2070:-326.776,-168.146,-151.891,-158.921,0,-140.558	1/2:103:0,51,51:0:0:51,51:1813,1730:-287.818,-140.337,-124.985,-147.536,0,-132.183	1/1:98:1,97,0:1:31:97,0:3440,0:-306.525,-26.4015,0,-306.826,-29.1999,-309.314	1/1:128:1,126,0:1:36:126,0:4469,0:-398.855,-34.9174,0,-399.157,-37.9298,-402.094	1/1:53:0,50,3:0:0:50,3:1757,90:-158.109,-15.0515,0,-150.916,-7.55594,-150.013	1/2:175:1,87,86:1:26:87,86:3090,2955:-489.464,-237.976,-213.823,-249.815,0,-225.964	1/2:6:0,5,1:0:0:5,1:180,31:-17.5271,-2.79842,-1.29327,-15.0469,0,-14.7459	1/1:174:1,170,0:1:36:170,0:6088,0:-544.502,-48.2108,0,-544.803,-51.1751,-547.74	1/1:43:0,41,0:0:0:41,0:1472,0:-132.469,-12.3422,0,-132.469,-12.3422,-132.469	1/2:13:0,10,3:0:0:10,3:356,106:-38.0032,-8.98607,-5.97577,-29.3709,0,-28.4679	1/2:103:0,47,54:0:0:47,54:1671,1833:-284.814,-148.637,-134.489,-136.168,0,-119.913	1/1:79:0,78,0:0:0:78,0:2772,0:-249.481,-23.4803,0,-249.481,-23.4803,-249.481	1/2:10:0,4,6:0:0:4,6:144,214:-29.5526,-17.8016,-16.5975,-12.1095,0,-10.3033	1/2:25:0,16,8:0:0:16,8:572,268:-68.4459,-21.8064,-16.9899,-46.7549,0,-44.3466	1/2:80:0,44,35:0:0:44,35:1566,1189:-224.053,-96.4153,-83.17,-127.625,0,-117.089	1/1:87:0,85,0:0:0:85,0:2996,0:-269.491,-25.5876,0,-269.491,-25.5876,-269.491	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:100:0,100,0:0:0:100,0:3534,0:-318.264,-30.103,0,-318.264,-30.103,-318.264	1/1:181:2,177,0:2:52:177,0:6259,0:-558.481,-49.3274,0,-559.083,-53.2823,-563.089	1/1:87:3,83,1:3:94:83,1:2932,34:-255.337,-17.4514,0,-253.482,-22.2208,-260.734	1/1:54:0,54,0:0:0:54,0:1902,0:-171.397,-16.2556,0,-171.397,-16.2556,-171.397	1/1:298:0,292,1:0:0:292,1:10375,28:-933.373,-87.9008,0,-931.155,-85.6857,-930.854	1/1:167:1,166,0:1:36:166,0:5841,0:-522.197,-46.6737,0,-522.498,-49.971,-525.436	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:80:0,78,0:0:0:78,0:2774,0:-249.614,-23.4803,0,-249.614,-23.4803,-249.614	1/1:39:0,39,0:0:0:39,0:1392,0:-125.579,-11.7402,0,-125.579,-11.7402,-125.579	1/2:6:0,4,2:0:0:4,2:140,59:-16.4293,-5.00208,-3.79796,-11.7405,0,-11.1384	1/1:166:2,162,1:2:59:162,1:5724,33:-509.65,-44.0656,0,-507.584,-46.0878,-511.986	1/2:63:0,28,35:0:0:28,35:1004,1196:-179.301,-97.4053,-88.9764,-82.247,0,-71.711	1/2:180:0,95,84:0:0:95,84:3361,2875:-507.075,-233.317,-204.719,-273.717,0,-248.431	1/1:156:2,153,0:2:63:153,0:5463,0:-485.827,-40.9681,0,-486.429,-46.0576,-491.495	1/1:106:0,105,0:0:0:105,0:3707,0:-333.474,-31.6082,0,-333.474,-31.6082,-333.474	1/1:72:0,70,0:0:0:70,0:2508,0:-225.612,-21.0721,0,-225.612,-21.0721,-225.612	1/2:13:0,5,8:0:0:5,8:176,265:-36.0997,-21.7637,-20.2586,-14.6799,0,-12.2716	1/1:70:0,69,0:0:0:69,0:2455,0:-220.834,-20.7711,0,-220.834,-20.7711,-220.834	1/1:87:0,86,0:0:0:86,0:3071,0:-276.318,-25.8886,0,-276.318,-25.8886,-276.318	1/1:177:1,174,0:1:32:174,0:6194,0:-554.371,-49.7959,0,-554.672,-52.3792,-557.25	1/1:67:0,67,0:0:0:67,0:2362,0:-212.839,-20.169,0,-212.839,-20.169,-212.839	1/1:33:0,33,0:0:0:33,0:1171,0:-105.697,-9.93399,0,-105.697,-9.93399,-105.697	1/2:35:0,29,6:0:0:29,6:1028,201:-100.378,-16.6131,-7.88324,-84.1032,0,-82.297	1/1:81:0,80,0:0:0:80,0:2856,0:-256.918,-24.0824,0,-256.918,-24.0824,-256.918	1/2:39:0,15,23:0:0:15,23:523,791:-106.76,-64.2238,-59.7084,-42.5239,0,-35.6002	1/1:45:0,45,0:0:0:45,0:1602,0:-144.469,-13.5464,0,-144.469,-13.5464,-144.469	1/1:52:0,51,0:0:0:51,0:1792,0:-161.2,-15.3525,0,-161.2,-15.3525,-161.2	1/1:21:0,21,0:0:0:21,0:743,0:-67.1933,-6.32163,0,-67.1933,-6.32163,-67.1933	1/2:68:0,34,34:0:0:34,34:1220,1125:-190.81,-91.3114,-81.0764,-99.8434,0,-89.6084	1/2:23:0,15,8:0:0:15,8:525,253:-63.0487,-20.3165,-15.8011,-42.7048,0,-40.2965	1/1:76:0,76,0:0:0:76,0:2713,0:-244.412,-22.8783,0,-244.412,-22.8783,-244.412	1/1:52:0,52,0:0:0:52,0:1830,0:-164.979,-15.6536,0,-164.979,-15.6536,-164.979
chr06	3890593	.	AAGAC	GAGAT,GAGAC	114884	PASS	AB=0.477093,0.518502;ABP=13.3568,9.76004;AC=141,45;AF=0.758065,0.241935;AN=186;AO=4170,1197;CIGAR=1X3M1X,1X4M;DP=5384;DPB=5385.8;DPRA=10.7353,0.985411;EPP=9058.05,2602.26;EPPR=5.18177;GTI=2;LEN=5,1;MEANALT=1.69231,2.18367;MQM=57.3839,59.5798;MQMR=60;NS=93;NUMALT=2;ODDS=3.01164;PAIRED=0,0;PAIREDR=0;PAO=9,0;PQA=276,0;PQR=0;PRO=0;QA=147580,42694;QR=36;RO=1;RPL=0,0;RPP=9058.05,2602.26;RPPR=5.18177;RPR=4170,1197;RUN=1,1;SAF=4170,1197;SAP=9058.05,2602.26;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:18:0,16,2:0:0:16,2:561,72:-51.7971,-6.23466,-1.41818,-45.9212,0,-45.3191	1/1:40:0,40,0:0:0:40,0:1417,0:-127.312,-12.0412,0,-127.312,-12.0412,-127.312	1/2:100:0,51,48:0:0:51,48:1819,1716:-287.633,-139.598,-124.245,-148.042,0,-133.592	1/1:95:0,95,0:0:0:95,0:3330,0:-299.393,-28.5979,0,-299.393,-28.5979,-299.393	1/2:18:0,10,8:0:0:10,8:358,284:-52.6776,-23.4951,-20.4848,-29.5386,0,-27.1304	2/2:9:0,0,9:0:0:0,9:0,324:-29.5059,-29.5059,-29.5059,-2.70927,-2.70927,0	1/1:58:0,58,0:0:0:58,0:2065,0:-184.768,-17.4597,0,-184.768,-17.4597,-184.768	1/2:96:0,46,50:0:0:46,50:1622,1792:-277.973,-146.511,-132.664,-131.816,0,-116.765	1/2:49:0,25,24:0:0:25,24:884,864:-142.635,-70.7482,-63.2224,-72.2426,0,-65.0179	1/2:57:0,27,30:0:0:27,30:962,1068:-165.753,-87.354,-79.2262,-78.7554,0,-69.7245	1/2:89:0,43,45:0:0:43,45:1511,1616:-254.69,-131.893,-118.948,-122.87,0,-109.323	1/1:111:0,110,1:0:0:110,1:3908,36:-351.271,-33.1133,0,-348.333,-30.066,-348.032	1/2:79:0,47,32:0:0:47,32:1676,1137:-229.309,-92.9964,-78.848,-136.668,0,-127.035	1/2:90:0,46,43:0:0:46,43:1633,1540:-258.509,-125.589,-111.742,-132.916,0,-119.972	1/1:58:0,58,0:0:0:58,0:2047,0:-184.405,-17.4597,0,-184.405,-17.4597,-184.405	1/2:80:0,31,49:0:0:31,49:1078,1748:-229.651,-142.845,-133.513,-87.1561,0,-72.4057	1/1:58:0,58,0:0:0:58,0:2046,0:-184.254,-17.4597,0,-184.254,-17.4597,-184.254	1/1:39:0,39,0:0:0:39,0:1396,0:-125.763,-11.7402,0,-125.763,-11.7402,-125.763	1/1:54:0,54,0:0:0:54,0:1906,0:-171.635,-16.2556,0,-171.635,-16.2556,-171.635	1/1:64:0,64,0:0:0:64,0:2262,0:-203.8,-19.2659,0,-203.8,-19.2659,-203.8	1/2:91:0,43,48:0:0:43,48:1492,1705:-260.332,-139.275,-126.331,-121.407,0,-106.958	1/1:44:0,44,0:0:0:44,0:1567,0:-140.882,-13.2453,0,-140.882,-13.2453,-140.882	1/2:28:0,13,15:0:0:13,15:467,540:-82.51,-44.4211,-40.5077,-38.4483,0,-33.9329	1/2:30:0,17,12:0:0:17,12:607,432:-84.7054,-35.2444,-30.1269,-49.4598,0,-45.8475	1/2:53:0,20,32:0:0:20,32:702,1148:-150.869,-93.7681,-87.7475,-57.2265,0,-47.5936	1/1:117:0,117,0:0:0:117,0:4161,0:-371.412,-35.2205,0,-371.412,-35.2205,-371.412	1/1:140:0,139,0:0:0:139,0:4922,0:-442.342,-41.8432,0,-442.342,-41.8432,-442.342	1/1:30:0,30,0:0:0:30,0:1075,0:-96.9501,-9.0309,0,-96.9501,-9.0309,-96.9501	1/2:163:0,56,107:0:0:56,107:1991,3832:-473.241,-312.517,-295.659,-160.737,0,-128.527	1/2:52:0,24,28:0:0:24,28:861,1000:-152.081,-81.8865,-74.6618,-70.5519,0,-62.1231	1/1:33:0,33,0:0:0:33,0:1169,0:-105.474,-9.93399,0,-105.474,-9.93399,-105.474	1/2:11:0,8,3:0:0:8,3:287,108:-32.5687,-9.17208,-6.76384,-23.7561,0,-22.853	1/1:14:0,14,0:0:0:14,0:490,0:-44.3432,-4.21442,0,-44.3432,-4.21442,-44.3432	1/2:4:0,2,2:0:0:2,2:72,72:-12.1042,-6.23114,-5.62908,-6.23275,0,-5.63069	1/2:8:0,2,6:0:0:2,6:72,216:-23.8582,-17.9843,-17.3823,-6.23371,0,-4.42753	1/1:16:0,16,0:0:0:16,0:567,0:-51.3498,-4.81648,0,-51.3498,-4.81648,-51.3498	1/2:179:0,82,94:0:0:82,94:2894,3356:-509.133,-273.622,-248.938,-235.534,0,-207.237	1/1:23:0,23,0:0:0:23,0:804,0:-72.6331,-6.92369,0,-72.6331,-6.92369,-72.6331	1/1:51:0,50,0:0:0:50,0:1784,0:-160.44,-15.0515,0,-160.44,-15.0515,-160.44	.:.:.:.:.:.:.:.	1/1:67:0,67,0:0:0:67,0:2372,0:-213.055,-20.169,0,-213.055,-20.169,-213.055	1/1:19:0,19,0:0:0:19,0:682,0:-61.6811,-5.71957,0,-61.6811,-5.71957,-61.6811	1/2:74:0,32,42:0:0:32,42:1127,1500:-213.734,-122.492,-112.859,-91.5954,0,-78.9521	1/2:58:0,26,32:0:0:26,32:919,1148:-168.763,-93.9923,-86.1655,-75.1261,0,-65.4931	1/2:42:1,21,20:1:36:21,20:744,704:-114.275,-54.0378,-50.6541,-57.5924,0,-54.5095	1/2:31:0,13,18:0:0:13,18:458,644:-90.086,-52.814,-48.9006,-37.6262,0,-32.2077	1/2:64:0,32,32:0:0:32,32:1120,1152:-185.024,-94.2476,-84.6147,-91.1305,0,-81.4976	1/1:78:0,78,0:0:0:78,0:2742,0:-246.737,-23.4803,0,-246.737,-23.4803,-246.737	1/1:42:0,42,0:0:0:42,0:1494,0:-134.689,-12.6433,0,-134.689,-12.6433,-134.689	1/2:69:0,37,32:0:0:37,32:1311,1140:-199.962,-93.2505,-82.1124,-107.066,0,-97.4335	1/2:66:0,34,31:0:0:34,31:1204,1097:-186.536,-89.0762,-78.8412,-97.4523,0,-88.1204	1/2:14:0,12,2:0:0:12,2:412,72:-39.5952,-6.2322,-2.61984,-33.7203,0,-33.1182	1/1:76:0,76,0:0:0:76,0:2705,0:-242.239,-22.8783,0,-242.239,-22.8783,-242.239	1/1:31:0,31,0:0:0:31,0:1086,0:-98.0304,-9.33193,0,-98.0304,-9.33193,-98.0304	1/2:11:0,2,9:0:0:2,9:70,324:-32.4856,-26.7932,-26.1911,-6.04404,0,-3.33477	1/2:71:0,39,32:0:0:39,32:1360,1140:-203.791,-93.2716,-81.5315,-110.872,0,-101.239	1/1:21:0,21,0:0:0:21,0:738,0:-66.7348,-6.32163,0,-66.7348,-6.32163,-66.7348	1/2:15:0,10,5:0:0:10,5:360,180:-44.4211,-15.0469,-12.0366,-29.734,0,-28.2289	1/2:12:0,8,4:0:0:8,4:288,144:-35.6088,-12.1095,-9.70126,-23.8592,0,-22.655	1/2:43:0,19,24:0:0:19,24:682,845:-124.736,-69.1378,-63.4182,-55.9537,0,-48.729	1/1:82:0,81,1:0:0:81,1:2892,36:-259.924,-24.3834,0,-256.986,-21.0862,-256.685	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:60:0,60,0:0:0:60,0:2123,0:-190.812,-18.0618,0,-190.812,-18.0618,-190.812	1/1:90:0,90,0:0:0:90,0:3163,0:-283.851,-27.0927,0,-283.851,-27.0927,-283.851	1/1:28:0,28,0:0:0:28,0:989,0:-89.2178,-8.42884,0,-89.2178,-8.42884,-89.2178	1/1:43:0,43,0:0:0:43,0:1532,0:-138.07,-12.9443,0,-138.07,-12.9443,-138.07	1/1:92:0,92,0:0:0:92,0:3253,0:-292.566,-27.6948,0,-292.566,-27.6948,-292.566	1/1:93:0,91,2:0:0:91,2:3217,72:-289.254,-27.3937,0,-283.379,-21.1591,-282.777	1/1:59:0,59,0:0:0:59,0:2098,0:-188.109,-17.7608,0,-188.109,-17.7608,-188.109	1/1:14:0,14,0:0:0:14,0:499,0:-45.222,-4.21442,0,-45.222,-4.21442,-45.222	1/1:50:0,50,0:0:0:50,0:1778,0:-160.282,-15.0515,0,-160.282,-15.0515,-160.282	1/2:8:0,3,5:0:0:3,5:108,176:-23.4927,-14.6799,-13.7768,-9.16965,0,-7.6645	1/1:76:0,75,1:0:0:75,1:2620,36:-234.771,-22.5773,0,-231.834,-19.28,-231.533	1/2:82:0,42,40:0:0:42,40:1497,1410:-236.76,-115.149,-102.505,-121.965,0,-109.924	1/2:53:0,26,27:0:0:26,27:921,941:-151.796,-76.8693,-69.0425,-75.2776,0,-67.1498	1/1:64:0,64,0:0:0:64,0:2288,0:-205.978,-19.2659,0,-205.978,-19.2659,-205.978	1/1:81:0,81,0:0:0:81,0:2889,0:-259.92,-24.3834,0,-259.92,-24.3834,-259.92	1/1:67:0,65,1:0:0:65,1:2318,36:-208.228,-19.567,0,-205.29,-16.6245,-204.989	1/2:16:0,8,8:0:0:8,8:287,288:-47.2611,-23.8592,-21.4509,-23.7611,0,-21.3528	1/1:50:0,50,0:0:0:50,0:1768,0:-159.094,-15.0515,0,-159.094,-15.0515,-159.094	1/1:57:0,57,0:0:0:57,0:2003,0:-180.206,-17.1587,0,-180.206,-17.1587,-180.206	1/1:98:0,97,0:0:0:97,0:3403,0:-306.047,-29.1999,0,-306.047,-29.1999,-306.047	1/1:59:0,59,0:0:0:59,0:2063,0:-185.852,-17.7608,0,-185.852,-17.7608,-185.852	1/1:71:0,70,0:0:0:70,0:2467,0:-221.718,-21.0721,0,-221.718,-21.0721,-221.718	1/2:43:0,20,23:0:0:20,23:708,805:-123.403,-65.7518,-59.7312,-58.0029,0,-51.0792	1/1:107:0,103,3:0:0:103,3:3619,108:-325.375,-31.0061,0,-316.562,-22.1789,-315.659	1/2:13:0,7,6:0:0:7,6:252,208:-37.8109,-17.2481,-15.1409,-20.9153,0,-19.1091	1/1:80:0,80,0:0:0:80,0:2821,0:-253.706,-24.0824,0,-253.706,-24.0824,-253.706	1/1:62:0,62,0:0:0:62,0:2203,0:-197.705,-18.6639,0,-197.705,-18.6639,-197.705	1/1:82:0,81,0:0:0:81,0:2848,0:-255.519,-24.3834,0,-255.519,-24.3834,-255.519	1/2:133:0,66,67:0:0:66,67:2351,2374:-385.058,-193.728,-173.86,-191.686,0,-171.517	1/2:57:0,17,40:0:0:17,40:602,1436:-166.521,-117.494,-112.377,-49.3819,0,-37.3407	1/1:52:0,52,0:0:0:52,0:1840,0:-165.689,-15.6536,0,-165.689,-15.6536,-165.689	1/1:107:0,107,0:0:0:107,0:3821,0:-343.429,-32.2102,0,-343.429,-32.2102,-343.429
chr06	3893122	.	A	G	221855	PASS	AB=0.558345;ABP=126.665;AC=144;AF=0.765957;AN=188;AO=9970;CIGAR=1X;DP=11840;DPB=11840;DPRA=0;EPP=20546.6;EPPR=3714.64;GTI=7;LEN=1;MEANALT=1.08511;MQM=59.7491;MQMR=59.7449;NS=94;NUMALT=1;ODDS=1.26939;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=355707;QR=65825;RO=1862;RPL=9841;RPP=20546.6;RPPR=3714.64;RPR=129;RUN=1;SAF=9970;SAP=21652.6;SAR=0;SRF=1862;SRP=4046.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:18,15:18:636:15:532:-38.2791,0,-47.6309	1/1:178:0,178:0:0:178:6359:-572.351,-53.5833,0	0/1:156:44,112:44:1548:112:3991:-312.415,0,-92.6422	1/1:337:0,337:0:0:337:12008:-1080.28,-101.447,0	0/1:92:38,53:38:1356:53:1888:-142.409,0,-94.587	0/1:67:32,35:32:1121:35:1232:-91.0118,0,-81.0267	1/1:151:0,151:0:0:151:5407:-486.623,-45.4555,0	0/1:132:67,65:67:2348:65:2320:-169.315,0,-171.84	0/1:82:38,44:38:1335:44:1584:-118.159,0,-95.7647	0/1:133:61,72:61:2184:72:2563:-190.877,0,-156.75	0/1:91:40,51:40:1440:51:1810:-135.783,0,-102.496	1/1:124:0,124:0:0:124:4421:-397.921,-37.3277,0	0/1:92:34,58:34:1196:58:2068:-158.688,0,-80.2475	0/1:136:60,76:60:2144:76:2720:-204.097,0,-152.283	1/1:77:0,77:0:0:77:2746:-247.378,-23.1793,0	0/1:64:31,33:31:1092:33:1171:-86.4292,0,-79.323	1/1:113:0,113:0:0:113:4051:-364.736,-34.0164,0	1/1:105:0,105:0:0:105:3755:-338.145,-31.6082,0	1/1:75:0,75:0:0:75:2674:-240.897,-22.5773,0	1/1:280:2,278:2:72:278:9938:-887.015,-77.4517,0	0/1:120:67,53:67:2363:53:1885:-133.793,0,-176.801	1/1:137:0,137:0:0:137:4868:-438.266,-41.2411,0	0/1:121:44,77:44:1549:77:2746:-210.951,0,-103.271	0/1:136:73,63:73:2588:63:2264:-163.082,0,-192.218	0/1:54:24,30:24:828:30:1064:-79.816,0,-58.5761	1/1:374:3,371:3:108:371:13206:-1178,-102.51,0	1/1:269:0,268:0:0:268:9552:-859.245,-80.676,0	1/1:45:0,45:0:0:45:1620:-146.078,-13.5464,0	0/1:294:109,185:109:3872:185:6616:-506.727,0,-260.167	0/1:159:77,82:77:2704:82:2915:-214.716,0,-195.608	1/1:137:2,135:2:72:135:4794:-423.752,-34.4044,0	0/1:18:4,14:4:144:14:500:-39.9176,0,-7.8935	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.36449	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:255:128,127:128:4564:127:4552:-332.939,0,-334.126	1/1:152:0,152:0:0:152:5392:-485.407,-45.7566,0	1/1:109:0,109:0:0:109:3906:-351.693,-32.8123,0	0/1:7:6,1:6:208:1:36:-1.49107,0,-16.9519	1/1:249:0,248:0:0:248:8843:-794.967,-74.6554,0	1/1:70:0,70:0:0:70:2516:-226.627,-21.0721,0	0/1:149:63,86:63:2190:86:3057:-230.447,0,-152.376	0/1:108:53,54:53:1876:54:1927:-140.965,0,-136.548	0/1:97:43,54:43:1536:54:1920:-143.86,0,-109.317	0/1:90:37,53:37:1315:53:1895:-143.543,0,-91.5568	0/1:91:54,36:54:1878:36:1296:-89.4868,0,-141.836	1/1:263:0,262:0:0:262:9343:-840.237,-78.8699,0	1/1:111:0,111:0:0:111:3984:-358.743,-33.4143,0	0/1:211:73,138:73:2576:138:4927:-380.057,0,-168.376	0/1:152:69,83:69:2445:83:2979:-222.568,0,-174.535	0/1:13:5,8:5:172:8:288:-22.354,0,-11.9046	1/1:294:0,294:0:0:294:10508:-945.594,-88.5028,0	1/1:86:1,84:1:36:84:2993:-265.999,-22.3491,0	0/1:27:14,13:14:469:13:468:-34.3287,0,-34.4015	0/1:142:44,98:44:1551:98:3453:-268.22,0,-97.1301	1/1:65:0,65:0:0:65:2323:-209.221,-19.567,0	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:39:7,32:7:252:32:1144:-91.5287,0,-11.2888	0/1:97:39,58:39:1376:58:2071:-157.326,0,-94.9341	1/1:155:1,154:1:36:154:5501:-491.47,-43.0614,0	0/1:8:2,6:2:72:6:212:-17.015,0,-4.42848	1/1:286:0,286:0:0:286:10205:-918.195,-86.0946,0	1/1:219:3,216:3:108:216:7719:-684.662,-55.8504,0	1/1:89:0,88:0:0:88:3152:-283.539,-26.4906,0	1/1:217:1,216:1:36:216:7644:-684.388,-61.7252,0	1/1:217:0,217:0:0:217:7742:-696.342,-65.3235,0	1/1:72:1,71:1:36:71:2502:-221.693,-18.0759,0	1/1:53:0,53:0:0:53:1892:-170.557,-15.9546,0	1/1:106:0,106:0:0:106:3782:-340.512,-31.9092,0	1/1:121:1,120:1:36:120:4291:-382.767,-32.8264,0	0/1:27:10,17:10:356:17:582:-44.5707,0,-23.2223	1/1:77:0,77:0:0:77:2751:-247.824,-23.1793,0	0/1:70:24,46:24:852:46:1630:-125.914,0,-55.9233	0/1:205:94,111:94:3324:111:3921:-291.241,0,-237.656	1/1:263:0,263:0:0:263:9390:-844.914,-79.1709,0	1/1:212:0,212:0:0:212:7553:-679.429,-63.8184,0	1/1:124:0,124:0:0:124:4435:-399.185,-37.3277,0	0/1:21:6,15:6:216:15:532:-41.8884,0,-13.4689	1/1:166:0,166:0:0:166:5944:-534.827,-49.971,0	1/1:191:0,191:0:0:191:6821:-613.952,-57.4967,0	1/1:281:0,281:0:0:281:10024:-902.023,-84.5894,0	1/1:103:0,103:0:0:103:3680:-331.311,-31.0061,0	1/1:104:0,104:0:0:104:3730:-335.894,-31.3071,0	0/1:129:62,67:62:2220:67:2383:-175.89,0,-161.232	1/1:208:3,205:3:100:205:7305:-648.146,-53.2838,0	0/1:37:17,20:17:612:20:711:-53.1775,0,-44.2738	1/1:94:0,94:0:0:94:3328:-299.731,-28.2968,0	1/1:87:0,87:0:0:87:3120:-281.023,-26.1896,0	1/1:73:0,73:0:0:73:2615:-235.592,-21.9752,0	0/1:130:62,68:62:2208:68:2432:-179.867,0,-159.85	0/1:82:62,20:62:2153:20:720:-40.4382,0,-169.218	1/1:144:0,144:0:0:144:5153:-463.862,-43.3483,0	1/1:147:0,147:0:0:147:5276:-474.963,-44.2514,0
chr06	3893131	.	GA	GC,CC	260130	PASS	AB=0.539489,0.456827;ABP=61.8341,73.3219;AC=144,44;AF=0.765957,0.234043;AN=188;AO=10008,2000;CIGAR=1M1X,2X;DP=12046;DPB=12047;DPRA=0,0.891708;EPP=21735.1,4345.96;EPPR=11.6962;GTI=5;LEN=1,2;MEANALT=1.88298,2.35185;MQM=59.7824,59.732;MQMR=55;NS=94;NUMALT=2;ODDS=5.28133;PAIRED=0,0;PAIREDR=0;PAO=0.5,1;PQA=18,36;PQR=18;PRO=0.5;QA=356163,69539;QR=111;RO=4;RPL=10008,2000;RPP=21735.1,4345.96;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=10008,2000;SAP=21735.1,4345.96;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,15,19:0:0:15,19:540,636:-95.5652,-51.4933,-46.9778,-44.08,0,-38.3604	1/1:179:0,179,0:0:0:179,0:6372,0:-573.521,-53.8844,0,-573.521,-53.8844,-573.521	1/2:155:0,112,43:0:0:112,43:3992,1516:-449.174,-123.778,-90.0626,-325.75,0,-312.805	1/1:340:0,339,1:0:0:339,1:11997,36:-1079.19,-102.049,0,-1076.26,-98.7536,-1075.96	1/2:93:0,53,40:0:0:53,40:1896,1407:-269.455,-114.883,-98.9281,-154.926,0,-142.885	1/2:69:0,33,36:0:0:33,36:1180,1270:-199.982,-103.764,-93.8305,-96.5725,0,-85.7354	1/1:156:0,156,0:0:0:156,0:5556,0:-500.027,-46.9607,0,-500.027,-46.9607,-500.027	1/2:146:0,70,75:0:0:70,75:2470,2651:-416.929,-215.81,-194.737,-201.113,0,-178.536	1/2:85:0,45,40:0:0:45,40:1612,1396:-245.353,-113.892,-100.346,-131.814,0,-119.773	1/2:140:0,71,69:0:0:71,69:2529,2407:-402.208,-196.077,-174.704,-206.484,0,-185.712	1/2:94:0,49,45:0:0:49,45:1725,1571:-268.551,-128.123,-113.373,-140.778,0,-127.232	1/1:124:0,124,0:0:0:124,0:4444,0:-399.986,-37.3277,0,-399.986,-37.3277,-399.986	1/2:98:0,58,40:0:0:58,40:2061,1394:-281.649,-113.704,-96.2444,-168.295,0,-156.254	1/2:141:0,78,62:0:0:78,62:2771,2119:-397.72,-171.948,-148.467,-225.76,0,-207.097	1/1:75:0,75,0:0:0:75,0:2638,0:-237.661,-22.5773,0,-237.661,-22.5773,-237.661	1/2:69:0,34,35:0:0:34,35:1209,1206:-196.829,-98.3015,-88.0665,-98.8776,0,-88.3415	1/1:112:0,112,0:0:0:112,0:3977,0:-358.08,-33.7154,0,-358.08,-33.7154,-358.08	1/1:104:0,103,0:0:0:103,0:3658,0:-329.06,-31.0061,0,-329.06,-31.0061,-329.06	1/1:75:0,74,0:0:0:74,0:2656,0:-238.92,-22.2762,0,-238.92,-22.2762,-238.92	1/1:280:0,278,2:0:0:278,2:9904,72:-890.643,-83.6863,0,-884.768,-77.4517,-884.166	1/2:126:0,53,72:0:0:53,72:1892,2498:-357.265,-203.034,-187.08,-154.223,0,-132.549	1/1:141:0,141,0:0:0:141,0:5022,0:-452.109,-42.4452,0,-452.109,-42.4452,-452.109	1/2:124:0,79,45:0:0:79,45:2818,1558:-356.678,-126.956,-103.175,-230.072,0,-216.525	1/2:143:0,63,80:0:0:63,80:2240,2733:-404.673,-222.123,-203.158,-182.899,0,-158.817	1/2:56:0,30,26:0:0:30,26:1080,866:-158.552,-70.4148,-61.3839,-88.4823,0,-80.6556	1/1:376:1,373,1:1:25:373,1:13229,31:-1187.58,-110.364,0,-1185.39,-109.794,-1187.04	1/1:268:0,268,0:0:0:268,0:9563,0:-860.534,-80.676,0,-860.534,-80.676,-860.534	1/1:45:0,45,0:0:0:45,0:1587,0:-143.114,-13.5464,0,-143.114,-13.5464,-143.114	1/2:308:0,183,123:0:0:183,123:6541,4338:-886.275,-353.23,-298.142,-533.093,0,-496.066	1/2:161:0,81,80:0:0:81,80:2898,2821:-466.225,-229.912,-205.529,-236.667,0,-212.585	1/1:141:1,138,2:1:25:138,2:4931,70:-441.144,-39.639,0,-435.749,-35.7793,-437.083	1/2:19:0,14,5:0:0:14,5:504,164:-54.7255,-13.5781,-9.3637,-41.4837,0,-39.9785	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/2:3:0,2,1:0:0:2,1:72,31:-8.70651,-2.79842,-2.19636,-6.23466,0,-5.93363	1/2:4:0,1,3:0:0:1,3:36,99:-11.259,-8.31391,-8.01288,-3.29724,0,-2.39415	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:267:0,127,139:0:0:127,139:4537,4885:-767.479,-397.583,-359.352,-369.905,0,-328.062	1/1:150:0,149,0:0:0:149,0:5296,0:-476.413,-44.8535,0,-476.413,-44.8535,-476.413	1/1:110:0,110,0:0:0:110,0:3891,0:-350.345,-33.1133,0,-350.345,-33.1133,-350.345	1/2:7:0,1,6:0:0:1,6:36,216:-20.9217,-17.9843,-17.6833,-3.29724,0,-1.49106	1/1:251:1,250,0:1:25:250,0:8917,0:-799.972,-73.0587,0,-800.274,-75.2575,-802.222	1/1:66:0,66,0:0:0:66,0:2348,0:-211.564,-19.868,0,-211.564,-19.868,-211.564	1/2:154:0,85,66:0:0:85,66:3031,2314:-435.451,-188.374,-162.786,-247.156,0,-227.288	1/2:113:0,56,57:0:0:56,57:1991,1971:-322.584,-160.502,-143.644,-162.433,0,-145.274	1/2:98:0,53,44:0:0:53,44:1873,1547:-278.433,-125.908,-109.953,-152.517,0,-139.272	1/2:92:0,54,38:0:0:54,38:1935,1319:-265.385,-107.568,-91.312,-158.169,0,-146.729	1/2:96:0,37,57:0:0:37,57:1320,1958:-266.684,-159.074,-147.936,-107.704,0,-90.5458	1/1:267:0,267,0:0:0:267,0:9506,0:-855.431,-80.375,0,-855.431,-80.375,-855.431	1/1:114:0,114,0:0:0:114,0:4025,0:-362.434,-34.3174,0,-362.434,-34.3174,-362.434	1/2:218:0,144,74:0:0:144,74:5091,2555:-622.529,-207.894,-164.546,-414.983,0,-392.706	1/2:153:0,82,70:0:0:82,70:2915,2453:-437.121,-199.584,-174.9,-237.53,0,-216.458	1/2:14:0,8,6:0:0:8,6:288,212:-41.122,-17.6188,-15.2106,-23.8592,0,-22.053	1/1:298:0,298,0:0:0:298,0:10610,0:-954.775,-89.7069,0,-954.775,-89.7069,-954.775	1/1:86:0,85,1:0:0:85,1:3024,36:-272.026,-25.5876,0,-269.089,-22.2903,-268.788	1/2:28:0,14,14:0:0:14,14:495,504:-81.7926,-41.4837,-37.2693,-40.6655,0,-36.4511	1/2:146:0,97,49:0:0:97,49:3462,1712:-421.849,-139.609,-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chr06	3908868	.	AATG	GATA,GATG	215870	PASS	AB=0.490691,0.506614;ABP=6.08292,4.5615;AC=144,44;AF=0.765957,0.234043;AN=188;AO=7960,2092;CIGAR=1X2M1X,1X3M;DP=10071;DPB=10071.5;DPRA=0,1.18022;EPP=17287.9,4545.73;EPPR=7.35324;GTI=1;LEN=4,1;MEANALT=1.7766,2.2069;MQM=54.497,59.8834;MQMR=60;NS=94;NUMALT=2;ODDS=8.22461;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=72,0;PQR=0;PRO=0;QA=281985,74660;QR=72;RO=2;RPL=0,0;RPP=17287.9,4545.73;RPPR=7.35324;RPR=7960,2092;RUN=1,1;SAF=7960,2092;SAP=17287.9,4545.73;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,27,17:0:0:27,17:957,608:-127.033,-49.9345,-41.8067,-77.453,0,-72.3355	1/1:126:0,126,0:0:0:126,0:4465,0:-399.77,-37.9298,0,-399.77,-37.9298,-399.77	1/2:132:0,66,66:0:0:66,66:2345,2364:-383.123,-192.96,-173.092,-190.519,0,-170.651	1/1:184:0,183,1:0:0:183,1:6470,36:-580.493,-55.0885,0,-577.555,-51.7912,-577.254	1/2:72:0,42,30:0:0:42,30:1457,1080:-206.707,-88.4823,-75.8391,-118.578,0,-109.548	1/2:64:0,27,37:0:0:27,37:955,1324:-185.717,-108.316,-100.188,-77.7556,0,-66.6175	1/1:142:0,142,0:0:0:142,0:5056,0:-454.723,-42.7463,0,-454.723,-42.7463,-454.723	1/2:202:0,106,96:0:0:106,96:3751,3421:-583.196,-279.015,-247.105,-304.536,0,-275.637	1/2:92:0,44,48:0:0:44,48:1555,1724:-267.271,-140.991,-127.746,-126.635,0,-112.185	1/2:140:0,62,78:0:0:62,78:2173,2785:-403.793,-227.409,-208.745,-176.737,0,-153.256	1/2:54:0,28,26:0:0:28,26:1003,936:-158.308,-76.7303,-68.3015,-81.9359,0,-74.1091	1/1:42:0,42,0:0:0:42,0:1494,0:-134.123,-12.6433,0,-134.123,-12.6433,-134.123	1/2:42:0,22,20:0:0:22,20:772,705:-120.076,-57.7522,-51.1295,-62.6743,0,-56.6537	1/2:65:0,36,29:0:0:36,29:1279,1025:-187.791,-83.8308,-72.9937,-104.314,0,-95.5843	1/1:32:0,32,0:0:0:32,0:1144,0:-103.223,-9.63296,0,-103.223,-9.63296,-103.223	1/2:29:0,10,19:0:0:10,19:360,684:-85.4336,-56.1708,-53.1605,-29.6219,0,-23.9023	1/1:49:0,49,0:0:0:49,0:1723,0:-154.782,-14.7505,0,-154.782,-14.7505,-154.782	1/1:34:0,34,0:0:0:34,0:1213,0:-108.706,-10.235,0,-108.706,-10.235,-108.706	1/1:22:0,22,0:0:0:22,0:787,0:-70.9405,-6.62266,0,-70.9405,-6.62266,-70.9405	1/1:189:0,187,2:0:0:187,2:6663,72:-597.114,-56.2926,0,-591.239,-50.0579,-590.637	1/2:154:0,87,67:0:0:87,67:3061,2400:-444.049,-196.074,-169.884,-248.329,0,-228.16	1/1:146:0,146,0:0:0:146,0:5163,0:-464.588,-43.9504,0,-464.588,-43.9504,-464.588	1/2:146:0,61,85:0:0:61,85:2165,3052:-425.004,-249.317,-230.954,-176.043,0,-150.456	1/2:127:0,69,58:0:0:69,58:2470,2054:-368.078,-167.394,-146.623,-201.04,0,-183.58	1/2:85:0,38,46:0:0:38,46:1339,1611:-239.633,-131.066,-119.627,-108.558,0,-94.7105	1/1:357:0,355,2:0:0:355,2:12443,72:-1117.48,-106.866,0,-1111.6,-100.631,-1111	1/1:242:0,241,1:0:0:241,1:8580,36:-769.864,-72.5482,0,-766.927,-69.251,-766.626	1/1:18:0,18,0:0:0:18,0:644,0:-58.2042,-5.41854,0,-58.2042,-5.41854,-58.2042	1/2:313:0,156,154:0:0:156,154:5532,5524:-900.277,-450.565,-403.604,-449.709,0,-403.35	1/2:220:0,89,131:0:0:89,131:3158,4696:-639.756,-383.174,-356.383,-256.937,0,-217.502	1/1:210:0,206,1:0:0:206,1:7244,36:-650.786,-62.0122,0,-647.849,-59.0747,-647.548	1/2:26:0,8,18:0:0:8,18:278,644:-75.4369,-52.8721,-50.4638,-22.915,0,-17.4965	1/1:32:0,32,0:0:0:32,0:1137,0:-102.358,-9.63296,0,-102.358,-9.63296,-102.358	1/2:21:0,12,9:0:0:12,9:421,324:-60.9626,-26.7962,-23.1838,-34.522,0,-31.8127	1/2:36:0,19,17:0:0:19,17:665,612:-103.986,-50.2959,-44.5764,-54.044,0,-48.9265	1/1:31:0,31,0:0:0:31,0:1100,0:-99.0513,-9.33193,0,-99.0513,-9.33193,-99.0513	1/2:120:0,65,55:0:0:65,55:2308,1980:-349.76,-161.917,-142.35,-188.2,0,-171.644	1/1:409:0,408,1:0:0:408,1:14407,36:-1291.69,-122.82,0,-1288.75,-119.523,-1288.45	1/1:50:0,50,0:0:0:50,0:1748,0:-155.657,-15.0515,0,-155.657,-15.0515,-155.657	1/2:8:0,1,7:0:0:1,7:36,252:-23.8545,-20.9217,-20.6207,-3.29214,0,-1.18493	1/1:146:0,146,0:0:0:146,0:5146,0:-461.667,-43.9504,0,-461.667,-43.9504,-461.667	1/1:34:0,34,0:0:0:34,0:1224,0:-110.055,-10.235,0,-110.055,-10.235,-110.055	1/2:165:0,78,87:0:0:78,87:2775,3089:-477.357,-252.048,-228.568,-225.664,0,-199.474	1/2:29:0,15,14:0:0:15,14:532,504:-84.7924,-41.4837,-36.9682,-43.6659,0,-39.4514	1/2:27:0,14,13:0:0:14,13:503,468:-79.5587,-38.5463,-34.3318,-41.3719,0,-37.4585	1/2:117:0,46,70:0:0:46,70:1610,2508:-335.285,-204.54,-190.693,-130.737,0,-109.665	1/2:172:1,83,88:1:36:83,88:2949,3137:-491.328,-252.767,-230.719,-235.92,0,-212.366	1/1:196:0,195,0:0:0:195,0:6889,0:-618.313,-58.7009,0,-618.313,-58.7009,-618.313	1/1:98:0,98,0:0:0:98,0:3480,0:-312.93,-29.5009,0,-312.93,-29.5009,-312.93	1/2:190:0,115,73:0:0:115,73:4080,2601:-544.006,-212.051,-177.432,-331.999,0,-310.024	1/2:231:0,104,127:0:0:104,127:3691,4511:-668.575,-367.925,-336.618,-301.005,0,-262.774	1/2:19:0,9,10:0:0:9,10:323,345:-54.6589,-28.3217,-25.6124,-26.689,0,-23.6787	1/1:157:0,157,0:0:0:157,0:5611,0:-502.345,-47.2617,0,-502.345,-47.2617,-502.345	1/1:54:0,54,0:0:0:54,0:1910,0:-171.809,-16.2556,0,-171.809,-16.2556,-171.809	1/2:34:0,22,12:0:0:22,12:779,413:-96.7538,-33.8855,-27.2628,-63.2148,0,-59.6025	1/2:210:0,103,107:0:0:103,107:3651,3802:-606.98,-310.166,-279.16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chr06	3934017	.	C	T	244945	PASS	AB=0.504008;ABP=3.67182;AC=147;AF=0.781915;AN=188;AO=8895;CIGAR=1X;DP=11273;DPB=11273;DPRA=0;EPP=128.511;EPPR=62.0224;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.8698;MQMR=59.9764;NS=94;NUMALT=1;ODDS=1.53371;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317335;QR=84154;RO=2374;RPL=85;RPP=18587;RPPR=5062.98;RPR=8810;RUN=1;SAF=4891;SAP=195.079;SAR=4004;SRF=1323;SRP=70.6827;SRR=1051;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:23,37:23:804:37:1315:-100.326,0,-54.351	1/1:120:0,120:0:0:120:4277:-385.104,-36.1236,0	0/1:196:91,105:91:3226:105:3739:-277.71,0,-231.559	1/1:167:1,166:1:36:166:5907:-528.136,-46.6737,0	0/1:59:31,28:31:1112:28:1000:-72.5515,0,-82.6306	0/1:81:43,38:43:1536:38:1352:-97.5969,0,-114.15	1/1:119:1,118:1:36:118:4185:-373.225,-32.2243,0	0/1:223:102,121:102:3585:121:4340:-323.644,0,-255.731	0/1:116:62,54:62:2228:54:1920:-138.069,0,-165.864	0/1:111:61,50:61:2192:50:1780:-127.064,0,-164.131	0/1:135:66,69:66:2331:69:2455:-180.563,0,-169.411	1/1:181:0,181:0:0:181:6442:-579.865,-54.4864,0	0/1:200:100,100:100:3530:100:3579:-262.109,0,-257.704	0/1:215:109,106:109:3868:106:3756:-273.521,0,-283.594	1/1:145:1,144:1:36:144:5139:-459.049,-40.0511,0	0/1:173:95,78:95:3298:78:2760:-196.56,0,-244.96	1/1:191:0,191:0:0:191:6834:-614.126,-57.4967,0	1/1:127:0,127:0:0:127:4544:-409.125,-38.2308,0	1/1:118:0,118:0:0:118:4207:-378.807,-35.5215,0	1/1:140:0,140:0:0:140:5008:-450.863,-42.1442,0	0/1:133:63,70:63:2173:70:2503:-185.484,0,-155.794	1/1:44:0,44:0:0:44:1568:-141.41,-13.2453,0	0/1:77:40,37:40:1436:37:1324:-96.2818,0,-106.358	0/1:115:77,38:77:2744:38:1368:-88.7993,0,-212.392	0/1:61:31,30:31:1097:30:1076:-78.79,0,-80.6752	1/1:242:1,241:1:36:241:8598:-770.218,-69.251,0	1/1:258:0,258:0:0:258:9213:-828.885,-77.6657,0	1/1:70:0,70:0:0:70:2477:-223.18,-21.0721,0	0/1:193:96,97:96:3406:97:3464:-253.87,0,-248.657	0/1:91:47,44:47:1665:44:1558:-113.115,0,-122.742	1/1:91:2,89:2:68:89:3192:-281.045,-20.936,0	0/1:11:9,2:9:311:2:72:-3.52539,0,-25.0124	1/1:19:0,19:0:0:19:676:-61.1664,-5.71957,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:23:9,14:9:320:14:500:-38.4125,0,-22.2187	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:417:209,207:209:7355:207:7377:-538.532,0,-536.568	1/1:87:2,85:2:72:85:3016:-264.832,-19.3529,0	1/1:133:0,133:0:0:133:4732:-426.018,-40.037,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:125:0,125:0:0:125:4463:-401.835,-37.6288,0	1/1:90:0,90:0:0:90:3212:-289.299,-27.0927,0	0/1:118:60,58:60:2122:58:2052:-149.419,0,-155.726	0/1:148:70,78:70:2499:78:2808:-208.395,0,-180.61	0/1:138:62,76:62:2184:76:2713:-202.856,0,-155.282	0/1:55:17,38:17:604:38:1368:-106.864,0,-38.134	0/1:77:38,39:38:1364:39:1392:-102.4,0,-99.8814	1/1:127:0,127:0:0:127:4532:-408.04,-38.2308,0	1/1:60:1,59:1:36:59:2103:-185.929,-14.4635,0	0/1:124:66,58:66:2359:58:2080:-150.135,0,-175.24	0/1:95:31,63:31:1104:63:2244:-173.567,0,-71.0141	1/1:8:0,8:0:0:8:279:-25.4471,-2.40824,0	1/1:94:0,94:0:0:94:3317:-298.748,-28.2968,0	1/1:29:0,29:0:0:29:1020:-92.1122,-8.72987,0	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	0/1:126:55,71:55:1963:71:2536:-190.558,0,-139.015	1/1:53:0,53:0:0:53:1874:-168.911,-15.9546,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:14:2,12:2:72:12:419:-33.8279,0,-2.6223	0/1:100:54,46:54:1915:46:1648:-118.504,0,-142.524	1/1:215:2,212:2:72:212:7602:-677.285,-57.9435,0	0/1:16:2,14:2:68:14:500:-40.5197,0,-1.64123	1/1:110:1,109:1:36:109:3892:-346.873,-29.515,0	1/1:169:2,167:2:72:167:5963:-529.929,-44.0373,0	1/1:93:0,93:0:0:93:3317:-298.745,-27.9958,0	1/1:78:0,78:0:0:78:2770:-249.539,-23.4803,0	1/1:134:2,132:2:72:132:4693:-415.684,-33.5013,0	1/1:125:0,125:0:0:125:4414:-397.414,-37.6288,0	1/1:116:0,116:0:0:116:4137:-372.511,-34.9195,0	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:185:0,185:0:0:185:6603:-594.216,-55.6906,0	0/1:34:18,16:18:619:16:576:-41.94,0,-45.7968	1/1:108:0,108:0:0:108:3829:-344.719,-32.5112,0	0/1:86:35,51:35:1234:51:1820:-138.193,0,-85.4741	0/1:262:131,131:131:4700:131:4655:-340.154,0,-344.289	1/1:117:0,117:0:0:117:4184:-376.731,-35.2205,0	1/1:157:2,155:2:68:155:5514:-489.925,-40.804,0	1/1:115:0,115:0:0:115:4096:-368.824,-34.6185,0	0/1:23:14,9:14:500:9:320:-22.2187,0,-38.4125	1/1:112:1,111:1:36:111:3976:-354.431,-30.1171,0	1/1:115:0,115:0:0:115:4120:-370.966,-34.6185,0	1/1:167:0,167:0:0:167:5976:-537.859,-50.272,0	1/1:158:1,157:1:36:157:5604:-501.563,-44.66,0	1/1:163:0,163:0:0:163:5794:-521.568,-49.0679,0	0/1:218:109,109:109:3907:109:3915:-286.752,0,-286.195	1/1:291:2,289:2:72:289:10300:-919.953,-80.763,0	0/1:69:39,30:39:1396:30:1080:-76.7413,0,-105.168	1/1:142:1,141:1:36:141:5029:-449.025,-39.148,0	1/1:171:0,171:0:0:171:6124:-551.257,-51.4761,0	1/1:183:0,183:0:0:183:6558:-590.208,-55.0885,0	0/1:202:91,111:91:3209:111:3950:-294.883,0,-228.227	0/1:130:83,47:83:2938:47:1688:-113.071,0,-225.519	1/1:77:0,77:0:0:77:2744:-247.199,-23.1793,0	1/1:259:2,257:2:72:257:9215:-822.455,-71.13,0
chr06	3934045	.	CGA	AGG,AGA	311226	PASS	AB=0.50665,0.490025;ABP=4.85867,7.16913;AC=147,41;AF=0.781915,0.218085;AN=188;AO=9010,2383;CIGAR=1X1M1X,1X2M;DP=11434;DPB=11437;DPRA=0,1.07129;EPP=177.138,71.9224;EPPR=6.91895;GTI=1;LEN=3,1;MEANALT=1.96809,2.25424;MQM=59.865,59.9895;MQMR=60;NS=94;NUMALT=2;ODDS=1.01107;PAIRED=0,0;PAIREDR=0;PAO=4.5,4.5;PQA=160,160;PQR=0;PRO=0;QA=316105,85141;QR=178;RO=5;RPL=8988,2375;RPP=19377.4,5108.38;RPPR=6.91895;RPR=22,8;RUN=1,1;SAF=4908,1321;SAP=159.577,64.1368;SAR=4102,1062;SRF=3;SRP=3.44459;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:61:0,37,24:0:0:37,24:1301,856:-176.035,-70.1364,-58.9983,-106.253,0,-99.0281	1/1:118:0,117,1:0:0:117,1:4090,36:-367.871,-35.2205,0,-364.934,-31.9233,-364.633	1/2:196:0,107,89:0:0:107,89:3740,3180:-563.812,-259.574,-227.363,-304.533,0,-277.741	1/1:169:0,168,1:0:0:168,1:5824,36:-523.922,-50.573,0,-520.984,-47.2758,-520.683	1/2:58:0,27,31:0:0:27,31:957,1116:-169.378,-91.4198,-83.292,-78.3147,0,-68.9828	1/2:87:0,40,47:0:0:40,47:1399,1655:-248.898,-135.085,-123.044,-114.164,0,-100.015	1/1:119:0,118,1:0:0:118,1:4122,36:-370.742,-35.5215,0,-367.805,-32.2243,-367.504	1/2:232:0,126,106:0:0:126,106:4462,3792:-673.038,-309.569,-271.64,-363.824,0,-331.915	1/2:116:0,53,62:0:0:53,62:1868,2220:-333.276,-181.188,-165.234,-152.229,0,-133.565	1/2:114:0,50,63:0:0:50,63:1757,2255:-326.89,-183.888,-168.836,-142.996,0,-124.032	1/2:141:0,71,70:0:0:71,70:2496,2495:-406.895,-203.731,-182.357,-203.518,0,-182.446	1/1:181:1,178,0:1:34:178,0:6277,0:-561.65,-50.8154,0,-561.951,-53.5833,-564.709	1/2:198:0,99,99:0:0:99,99:3502,3545:-574.686,-289.455,-259.653,-285.587,0,-255.785	1/2:222:0,109,110:0:0:109,110:3801,3935:-629.983,-320.871,-288.059,-309.108,0,-275.995	1/1:145:0,144,1:0:0:144,1:5103,36:-459.052,-43.3483,0,-456.115,-40.0511,-455.814	1/2:174:0,79,93:0:0:79,93:2758,3331:-495.977,-271.651,-247.87,-224.319,0,-196.323	1/1:188:0,188,0:0:0:188,0:6648,0:-597.888,-56.5936,0,-597.888,-56.5936,-597.888	1/1:126:0,126,0:0:0:126,0:4433,0:-399.141,-37.9298,0,-399.141,-37.9298,-399.141	1/1:121:0,119,0:0:0:119,0:4186,0:-376.643,-35.8226,0,-376.643,-35.8226,-376.643	1/1:143:0,143,0:0:0:143,0:5027,0:-452.58,-43.0473,0,-452.58,-43.0473,-452.58	1/2:140:0,73,66:0:0:73,66:2569,2360:-401.641,-192.511,-170.536,-209.204,0,-189.336	1/1:47:0,47,0:0:0:47,0:1646,0:-148.425,-14.1484,0,-148.425,-14.1484,-148.425	1/2:82:0,41,40:0:0:41,40:1408,1436:-231.452,-117.137,-104.794,-114.307,0,-102.266	1/2:115:0,39,76:0:0:39,76:1371,2692:-331.049,-219.455,-207.715,-111.946,0,-89.0681	1/2:62:0,29,33:0:0:29,33:1017,1176:-178.972,-96.2134,-87.4835,-83.1113,0,-73.1773	1/1:251:0,249,1:0:0:249,1:8740,36:-786.255,-74.9565,0,-783.317,-72.0091,-783.016	1/1:262:0,261,0:0:0:261,0:9140,0:-822.184,-78.5688,0,-822.184,-78.5688,-822.184	1/1:73:0,73,0:0:0:73,0:2565,0:-231.093,-21.9752,0,-231.093,-21.9752,-231.093	1/2:197:0,101,96:0:0:101,96:3500,3433:-564.736,-280.283,-249.879,-284.805,0,-255.907	1/2:90:0,44,45:0:0:44,45:1551,1620:-258.541,-132.262,-119.017,-126.352,0,-112.806	1/1:93:0,92,1:0:0:92,1:3209,36:-288.673,-27.6948,0,-285.736,-24.3975,-285.435	1/2:11:0,2,9:0:0:2,9:72,320:-32.3087,-26.4331,-25.831,-6.23466,0,-3.52539	1/1:19:0,19,0:0:0:19,0:682,0:-61.7083,-5.71957,0,-61.7083,-5.71957,-61.7083	1/2:9:0,5,4:0:0:5,4:165,144:-25.4325,-12.1095,-10.6043,-13.6695,0,-12.4654	1/2:24:0,15,9:0:0:15,9:517,324:-68.7821,-26.7966,-22.2811,-42.3396,0,-39.6303	1/1:34:0,34,0:0:0:34,0:1186,0:-107.043,-10.235,0,-107.043,-10.235,-107.043	1/2:423:1,214,208:1:36:214,208:7450,7434:-1208.61,-603.133,-541.65,-602.778,0,-543.102	1/1:93:0,91,2:0:0:91,2:3128,68:-281.403,-27.3937,0,-275.887,-21.5381,-275.285	1/1:138:0,137,0:0:0:137,0:4810,0:-432.802,-41.2411,0,-432.802,-41.2411,-432.802	1/2:4:0,2,2:0:0:2,2:70,72:-11.9251,-6.23466,-5.6326,-6.04527,0,-5.44321	1/1:124:0,124,0:0:0:124,0:4370,0:-393.476,-37.3277,0,-393.476,-37.3277,-393.476	1/1:94:0,94,0:0:0:94,0:3257,0:-293.351,-28.2968,0,-293.351,-28.2968,-293.351	1/2:122:0,60,62:0:0:60,62:2069,2228:-350.177,-182.12,-164.058,-168.409,0,-149.745	1/2:145:0,77,67:0:0:77,67:2736,2389:-417.678,-194.738,-171.559,-222.936,0,-202.767	1/2:138:0,77,61:0:0:77,61:2705,2188:-398.974,-178.823,-155.644,-220.506,0,-202.143	1/2:55:0,38,17:0:0:38,17:1358,608:-160.659,-49.9345,-38.4954,-111.082,0,-105.964	1/2:82:0,39,42:0:0:39,42:1381,1508:-235.504,-123.012,-111.271,-112.489,0,-99.8458	1/1:130:0,128,0:0:0:128,0:4461,0:-401.382,-38.5318,0,-401.382,-38.5318,-401.382	1/1:59:0,58,1:0:0:58,1:1988,36:-178.812,-17.4597,0,-175.874,-14.1625,-175.573	1/2:124:0,59,65:0:0:59,65:2075,2332:-359.471,-190.573,-172.812,-169.253,0,-149.686	1/2:97:0,66,31:0:0:66,31:2329,1100:-279.626,-89.9784,-70.1104,-190.001,0,-180.669	1/1:8:0,8,0:0:0:8,0:285,0:-25.994,-2.40824,0,-25.994,-2.40824,-25.994	1/1:93:0,93,0:0:0:93,0:3242,0:-292.004,-27.9958,0,-292.004,-27.9958,-292.004	1/1:29:0,29,0:0:0:29,0:992,0:-89.585,-8.72987,0,-89.585,-8.72987,-89.585	1/1:17:0,16,1:0:0:16,1:569,36:-51.183,-4.81648,0,-48.2453,-1.51924,-47.9443	1/2:129:0,75,54:0:0:75,54:2616,1935:-37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chr06	3939530	.	A	G	31503.8	PASS	AB=0.495713;ABP=3.62468;AC=45;AF=0.239362;AN=188;AO=1932;CIGAR=1X;DP=9996;DPB=9996;DPRA=0.833054;EPP=4198.29;EPPR=17494.2;GTI=2;LEN=1;MEANALT=1.01887;MQM=59.971;MQMR=59.9993;NS=94;NUMALT=1;ODDS=0.939459;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68504;QR=288366;RO=8063;RPL=0;RPP=4198.29;RPPR=17502.9;RPR=1932;RUN=1;SAF=0;SAP=4198.29;SAR=1932;SRF=1;SRP=17502.9;SRR=8062;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:33,30:33:1188:30:1057:-76.4741,0,-88.2637	0/0:123:123,0:123:4383:0:0:0,-37.0267,-394.642	0/1:103:49,54:49:1744:54:1932:-143.15,0,-126.238	0/0:274:274,0:274:9803:0:0:0,-82.4822,-882.213	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:94:94,0:94:3366:0:0:0,-28.2968,-303.155	0/1:184:89,95:89:3172:95:3358:-247.047,0,-230.313	0/1:124:61,63:61:2180:63:2228:-163.454,0,-159.139	0/1:97:56,41:56:1993:41:1468:-103.216,0,-150.442	0/1:79:35,44:35:1244:44:1571:-117.899,0,-88.4833	0/0:135:135,0:135:4832:0:0:0,-40.639,-435.035	0/1:118:62,56:62:2220:56:1986:-143.492,0,-164.543	0/1:106:53,53:53:1904:53:1882:-137.692,0,-139.729	0/0:75:75,0:75:2664:0:0:0,-22.5772,-240.007	0/1:80:36,44:36:1284:44:1544:-115.167,0,-91.781	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:280:280,0:280:10014:0:0:0,-84.2884,-901.197	0/1:224:107,117:107:3816:117:4141:-305.444,0,-276.205	0/0:100:99,1:99:3533:1:32:0,-26.9037,-314.979	0/1:147:77,70:77:2751:70:2498:-180.82,0,-203.58	0/1:95:50,45:50:1796:45:1598:-115.51,0,-133.324	0/1:71:27,44:27:972:44:1559:-119.228,0,-66.4248	0/0:306:306,0:306:10957:0:0:0,-92.1152,-986.022	0/0:178:178,0:178:6346:0:0:0,-53.5833,-571.23	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:238:116,122:116:4160:122:4373:-322.097,0,-302.937	0/1:158:79,79:79:2820:79:2784:-203.236,0,-206.477	0/0:112:111,1:111:3975:1:36:0,-30.1171,-354.341	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/1:223:104,119:104:3719:119:4185:-309.705,0,-267.781	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:57:56,1:56:1991:1:36:0,-13.5604,-175.865	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:140:140,0:140:5016:0:0:0,-42.1442,-451.586	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:49:29,20:29:1044:20:700:-48.5719,0,-79.5243	0/1:91:42,49:42:1496:49:1698:-125.706,0,-107.541	0/1:68:35,33:35:1247:33:1184:-86.3983,0,-92.064	0/1:117:65,51:65:2336:51:1784:-125.599,0,-175.367	0/1:95:55,40:55:1964:40:1436:-100.94,0,-148.437	0/0:144:143,1:143:5115:1:36:0,-39.75,-456.894	0/0:150:150,0:150:5376:0:0:0,-45.1545,-483.971	0/1:107:55,52:55:1950:52:1855:-135.019,0,-143.564	0/1:116:61,55:61:2159:55:1951:-140.946,0,-159.655	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.319	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/1:16:2,14:2:72:14:491:-39.7046,0,-2.02024	0/1:142:78,64:78:2783:64:2276:-162.354,0,-207.964	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/1:8:4,4:4:144:4:135:-10.0743,0,-10.9054	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:91:39,52:39:1384:52:1855:-139.835,0,-97.4651	0/0:111:109,2:109:3903:2:72:0,-26.5776,-344.626	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/0:235:235,0:235:8420:0:0:0,-70.742,-757.8	0/0:156:154,2:154:5532:2:72:0,-40.124,-491.166	0/0:116:116,0:116:4155:0:0:0,-34.9195,-374.132	0/0:99:99,0:99:3539:0:0:0,-29.802,-318.719	0/0:185:179,6:179:6424:6:216:0,-35.9,-558.455	0/0:181:181,0:181:6473:0:0:0,-54.4864,-582.654	0/0:59:59,0:59:2085:0:0:0,-17.7608,-187.919	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:29:14,15:14:504:15:532:-39.4832,0,-36.9682	0/0:98:98,0:98:3484:0:0:0,-29.5009,-313.771	0/1:140:73,67:73:2620:67:2390:-173.213,0,-193.903	0/1:232:141,91:141:5014:91:3194:-217.842,0,-381.568	0/0:159:159,0:159:5707:0:0:0,-47.8638,-513.745	0/0:109:109,0:109:3900:0:0:0,-32.8123,-351.194	0/0:233:232,1:232:8291:1:36:0,-66.5417,-742.602	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:135:134,1:134:4803:1:36:0,-37.0408,-428.826	0/0:145:145,0:145:5194:0:0:0,-43.6493,-467.597	0/0:308:308,0:308:11047:0:0:0,-92.7172,-994.119	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:94:93,1:93:3316:1:36:0,-24.6985,-295.061	0/1:83:53,30:53:1879:30:1080:-72.5278,0,-144.403	0/0:152:152,0:152:5448:0:0:0,-45.7566,-490.448	0/1:26:15,11:15:516:11:387:-27.3392,0,-38.9394	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.269	0/1:148:72,76:72:2571:76:2675:-196.44,0,-187.087	0/1:94:32,62:32:1148:62:2209:-170.777,0,-75.333	0/0:205:205,0:205:7320:0:0:0,-61.7111,-658.85	0/0:146:146,0:146:5239:0:0:0,-43.9504,-471.645
chr06	4016488	.	C	T	101616	PASS	AB=0.48151;ABP=10.6388;AC=141;AF=0.758065;AN=186;AO=4825;CIGAR=1X;DP=6174;DPB=6174;DPRA=34.2667;EPP=10480.4;EPPR=2932.33;GTI=1;LEN=1;MEANALT=1;MQM=59.9919;MQMR=59.9822;NS=93;NUMALT=1;ODDS=0.774578;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170821;QR=48123;RO=1349;RPL=4825;RPP=10480.4;RPPR=2932.33;RPR=0;RUN=1;SAF=0;SAP=10480.4;SAR=4825;SRF=0;SRP=2932.33;SRR=1349;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:18,10:18:633:10:352:-23.5894,0,-48.8662	1/1:64:0,64:0:0:64:2284:-205.194,-19.2659,0	0/1:68:42,26:42:1493:26:916:-62.2864,0,-114.192	1/1:69:0,69:0:0:69:2414:-217.515,-20.7711,0	0/1:30:14,16:14:500:16:564:-42.0594,0,-36.3053	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	1/1:102:0,102:0:0:102:3589:-323.221,-30.7051,0	0/1:102:44,58:44:1548:58:2060:-154.966,0,-108.907	0/1:96:39,57:39:1392:57:1992:-150.654,0,-96.6801	0/1:123:55,68:55:1980:68:2390:-178.329,0,-141.448	0/1:39:21,18:21:748:18:636:-45.8279,0,-55.9051	1/1:98:0,98:0:0:98:3485:-313.861,-29.5009,0	0/1:70:30,40:30:1068:40:1432:-108.105,0,-75.36	0/1:58:33,25:33:1171:25:880:-62.058,0,-88.2369	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0	0/1:49:29,20:29:1040:20:720:-50.3783,0,-79.1639	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	1/1:100:0,100:0:0:100:3548:-319.532,-30.103,0	0/1:144:87,57:87:3094:57:2028:-139.444,0,-235.337	1/1:29:0,29:0:0:29:1028:-92.833,-8.72987,0	0/1:55:28,27:28:1004:27:941:-68.445,0,-74.1192	0/1:82:33,49:33:1169:49:1725:-130.848,0,-80.8308	0/1:40:29,11:29:1044:11:392:-23.5789,0,-82.2336	1/1:221:1,220:1:36:220:7828:-700.957,-62.9294,0	1/1:135:0,135:0:0:135:4762:-428.742,-40.6391,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	0/1:120:45,75:45:1600:75:2635:-201.273,0,-108.167	0/1:73:39,34:39:1373:34:1210:-87.2311,0,-101.891	1/1:74:0,74:0:0:74:2584:-232.808,-22.2762,0	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:384:-34.8947,-3.31133,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:223:119,104:119:4246:104:3705:-266.522,0,-315.187	1/1:110:0,110:0:0:110:3899:-351.106,-33.1133,0	1/1:72:0,72:0:0:72:2568:-231.37,-21.6742,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:57:0,57:0:0:57:2009:-181.082,-17.1587,0	1/1:37:0,37:0:0:37:1289:-116.309,-11.1381,0	0/1:106:56,50:56:2008:50:1739:-124.879,0,-149.084	0/1:69:37,32:37:1313:32:1148:-82.8588,0,-97.6986	0/1:55:34,21:34:1215:21:744:-50.7277,0,-93.0991	0/1:18:12,6:12:432:6:212:-14.0063,0,-33.8027	0/1:79:47,32:47:1684:32:1125:-77.7747,0,-128.066	1/1:78:0,78:0:0:78:2773:-249.81,-23.4803,0	1/1:111:0,111:0:0:111:3934:-354.255,-33.4143,0	0/1:50:23,27:23:824:27:952:-70.9437,0,-59.4318	0/1:138:59,79:59:2120:79:2754:-206.56,0,-149.526	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:45:0,45:0:0:45:1577:-142.218,-13.5464,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:77:43,34:43:1540:34:1178:-83.141,0,-115.714	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:15:12,3:12:432:3:104:-5.18736,0,-34.7057	0/1:78:35,43:35:1218:43:1540:-115.412,0,-86.439	1/1:94:1,93:1:36:93:3314:-294.881,-24.6985,0	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:86:0,86:0:0:86:3052:-274.911,-25.8886,0	1/1:162:5,157:5:180:157:5574:-485.233,-32.2148,0	1/1:51:0,51:0:0:51:1804:-162.642,-15.3525,0	1/1:22:0,22:0:0:22:776:-70.1622,-6.62266,0	1/1:97:2,95:2:72:95:3378:-297.4,-22.3632,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:21:0,21:0:0:21:740:-66.9234,-6.32163,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:81:0,81:0:0:81:2865:-258.085,-24.3834,0	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	1/1:38:0,38:0:0:38:1337:-120.628,-11.4391,0	0/1:42:23,19:23:824:19:676:-48.5247,0,-61.7091	0/1:93:51,42:51:1824:42:1469:-104.507,0,-136.445	1/1:72:0,72:0:0:72:2515:-226.599,-21.6742,0	1/1:30:0,30:0:0:30:1057:-95.439,-9.0309,0	1/1:46:0,46:0:0:46:1603:-144.553,-13.8474,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:52:0,52:0:0:52:1821:-164.169,-15.6536,0	1/1:52:0,52:0:0:52:1829:-164.889,-15.6536,0	1/1:170:0,170:0:0:170:5946:-535.262,-51.1751,0	1/1:102:0,102:0:0:102:3636:-327.446,-30.7051,0	1/1:75:0,75:0:0:75:2676:-241.086,-22.5773,0	0/1:94:52,42:52:1843:42:1480:-105.198,0,-137.853	1/1:166:2,164:2:72:164:5836:-518.518,-43.1343,0	0/1:59:32,27:32:1139:27:968:-69.6766,0,-85.0576	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	1/1:81:0,81:0:0:81:2873:-258.807,-24.3834,0	1/1:23:0,23:0:0:23:820:-74.122,-6.92369,0	0/1:80:40,40:40:1440:40:1417:-103.743,0,-105.815	0/1:50:39,11:39:1400:11:392:-20.5686,0,-111.248	1/1:53:0,53:0:0:53:1880:-169.479,-15.9546,0	1/1:107:0,107:0:0:107:3782:-340.58,-32.2102,0
chr06	4072409	.	CTAT	CTAC,GTAC	207189	PASS	AB=0.431792,0.565876;ABP=210.96,196.984;AC=143,45;AF=0.760638,0.239362;AN=188;AO=9882,2958;CIGAR=3M1X,1X2M1X;DP=12866;DPB=12869.8;DPRA=34.9402,1.13274;EPP=21461.5,6426.23;EPPR=5.18177;GTI=0;LEN=1,4;MEANALT=1.82609,2.16071;MQM=28.651,43.0335;MQMR=42;NS=94;NUMALT=2;ODDS=1.22181;PAIRED=0,0;PAIREDR=0;PAO=8,9;PQA=280,316;PQR=0;PRO=0;QA=354305,105068;QR=35;RO=1;RPL=0,0;RPP=21461.5,6426.23;RPPR=5.18177;RPR=9882,2958;RUN=1,1;SAF=9882,2958;SAP=21461.5,6426.23;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:72:0,20,52:0:0:20,52:712,1852:-191.786,-148.573,-142.553,-43.5078,0,-27.8542	1/1:278:0,278,0:0:0:278,0:9980,0:-687.25,-83.6863,0,-687.25,-83.6863,-687.25	1/2:183:0,89,93:0:0:89,93:3188,3296:-456.705,-263.37,-236.579,-193.293,0,-165.297	1/1:298:0,297,0:0:0:297,0:10664,0:-751.972,-89.4059,0,-751.972,-89.4059,-751.972	1/2:162:0,70,91:0:0:70,91:2520,3248:-407.904,-256.787,-235.715,-151.071,0,-123.678	1/2:77:0,40,37:0:0:40,37:1440,1306:-190.808,-104.817,-92.7759,-86.3026,0,-75.1645	1/1:194:0,193,1:0:0:193,1:6916,36:-490.055,-58.0988,0,-488.654,-56.5083,-488.353	1/2:344:0,197,147:0:0:197,147:7041,5171:-840.656,-412.941,-353.638,-428.03,0,-383.779	1/2:181:0,77,104:0:0:77,104:2768,3704:-462.455,-295.028,-271.849,-167.732,0,-136.425	1/2:149:0,48,101:0:0:48,101:1724,3577:-391.32,-284.007,-269.557,-107.616,0,-77.2115	1/2:31:0,17,14:0:0:17,14:608,503:-78.319,-40.3998,-35.2823,-38.239,0,-34.0245	1/1:65:0,65,0:0:0:65,0:2332,0:-159.889,-19.567,0,-159.889,-19.567,-159.889	1/2:66:0,24,42:0:0:24,42:860,1495:-172.794,-120.013,-112.788,-53.0847,0,-40.4415	1/2:69:0,34,35:0:0:34,35:1216,1237:-172.186,-98.7558,-88.5208,-73.7393,0,-63.2032	1/1:75:0,74,0:0:0:74,0:2660,0:-185.999,-22.2762,0,-185.999,-22.2762,-185.999	1/2:41:0,20,21:0:0:20,21:720,754:-103.69,-59.9207,-53.9001,-44.0808,0,-37.7592	1/1:56:0,56,0:0:0:56,0:1993,0:-135.663,-16.8577,0,-135.663,-16.8577,-135.663	1/1:60:0,60,0:0:0:60,0:2156,0:-147.985,-18.0618,0,-147.985,-18.0618,-147.985	1/1:18:0,18,0:0:0:18,0:648,0:-44.9815,-5.41854,0,-44.9815,-5.41854,-44.9815	1/1:359:1,358,0:1:35:358,0:12844,0:-903.085,-104.649,0,-903.386,-107.769,-906.165	1/2:212:0,94,118:0:0:94,118:3376,4197:-536.492,-333.441,-305.144,-203.357,0,-167.835	1/1:126:0,124,0:0:0:124,0:4460,0:-319.736,-37.3277,0,-319.736,-37.3277,-319.736	1/2:133:0,63,70:0:0:63,70:2264,2492:-339.546,-198.903,-179.938,-140.956,0,-119.884	1/2:240:0,106,134:0:0:106,134:3800,4763:-605.356,-378.063,-346.154,-227.597,0,-187.259	1/2:156:0,59,97:0:0:59,97:2116,3461:-401.945,-274.015,-256.254,-128.232,0,-99.0323	1/1:541:0,535,6:0:0:535,6:19146,210:-1377.68,-161.051,0,-1361.88,-145.074,-1360.07	1/1:254:0,254,0:0:0:254,0:9105,0:-624.377,-76.4616,0,-624.377,-76.4616,-624.377	1/1:29:0,29,0:0:0:29,0:1044,0:-71.2753,-8.72987,0,-71.2753,-8.72987,-71.2753	1/2:346:0,131,215:0:0:131,215:4681,7638:-901.132,-603.185,-563.75,-298.255,0,-233.534	1/2:237:0,88,149:0:0:88,149:3164,5284:-610.745,-420.251,-393.761,-190.736,0,-145.882	1/1:146:0,141,5:0:0:141,5:5041,180:-355.052,-42.4452,0,-340.903,-27.951,-339.398	1/2:4:0,1,3:0:0:1,3:36,108:-11.0977,-8.95573,-8.6547,-2.43517,0,-1.53208	1/1:10:0,10,0:0:0:10,0:360,0:-24.8994,-3.0103,0,-24.8994,-3.0103,-24.8994	2/2:7:0,0,7:0:0:0,7:0,251:-22.5511,-22.5511,-22.5511,-2.10721,-2.10721,0	1/2:8:0,3,5:0:0:3,5:108,180:-21.2931,-14.761,-13.8579,-6.8375,0,-5.33235	1/1:4:0,4,0:0:0:4,0:144,0:-10.1239,-1.20412,0,-10.1239,-1.20412,-10.1239	1/2:216:0,94,120:0:0:94,120:3368,4281:-549.86,-337.912,-309.615,-211.987,0,-175.863	1/1:269:0,268,1:0:0:268,1:9580,35:-657.819,-80.676,0,-656.419,-79.0877,-656.118	1/1:22:0,22,0:0:0:22,0:792,0:-53.6864,-6.62266,0,-53.6864,-6.62266,-53.6864	1/2:5:0,3,2:0:0:3,2:108,72:-12.5254,-6.08786,-5.18477,-6.75828,0,-6.15622	1/1:371:0,369,2:0:0:369,2:13248,67:-906.985,-111.08,0,-902.803,-106.633,-902.201	1/1:15:0,15,0:0:0:15,0:540,0:-36.7977,-4.51545,0,-36.7977,-4.51545,-36.7977	1/2:280:0,115,163:0:0:115,163:4136,5810:-707.915,-459.904,-425.285,-248.054,0,-198.987	1/2:85:0,32,53:0:0:32,53:1144,1891:-222.067,-150.653,-141.02,-71.363,0,-55.4084	1/2:66:0,31,34:0:0:31,34:1116,1201:-165.356,-95.7999,-86.468,-69.512,0,-59.277	1/2:139:0,49,90:0:0:49,90:1760,3200:-366.119,-253.981,-239.23,-112.33,0,-85.2371	1/2:224:0,82,142:0:0:82,142:2940,5045:-580.371,-402.084,-377.399,-178.589,0,-135.843	1/1:265:0,265,0:0:0:265,0:9476,0:-666.971,-79.773,0,-666.971,-79.773,-666.971	1/1:215:0,212,0:0:0:212,0:7588,0:-534.297,-63.8184,0,-534.297,-63.8184,-534.297	1/2:261:0,136,124:0:0:136,124:4861,4444:-658.57,-355.354,-314.413,-303.344,0,-266.016	1/2:235:0,105,130:0:0:105,130:3764,4620:-604.506,-363.812,-332.204,-241.007,0,-201.873	1/2:4:0,2,2:0:0:2,2:72,71:-10.4757,-6.03335,-5.43129,-4.75799,0,-4.15593	1/1:264:0,264,0:0:0:264,0:9468,0:-650.673,-79.4719,0,-650.673,-79.4719,-650.673	1/1:35:0,34,1:0:0:34,1:1220,36:-88.6624,-10.235,0,-85.8093,-7.03335,-85.5083	1/2:11:0,2,9:0:0:2,9:72,322:-30.4362,-26.1273,-25.5252,-4.59672,0,-1.88745	1/2:192:0,98,93:0:0:98,93:3516,3290:-473.614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chr06	4072425	.	GAACCC	AAACTT,AAACCC	207325	PASS	AB=0.435543,0.560179;ABP=188.605,164.788;AC=143,45;AF=0.760638,0.239362;AN=188;AO=9971,2923;CIGAR=1X3M2X,1X5M;DP=12942;DPB=12942;DPRA=35.1467,1.0562;EPP=21654.8,6332.86;EPPR=5.18177;GTI=3;LEN=6,1;MEANALT=2.03261,2.5;MQM=28.6147,43.2172;MQMR=31;NS=94;NUMALT=2;ODDS=2.20494;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=352054,104317;QR=32;RO=1;RPL=0,2;RPP=21654.8,6332.86;RPPR=5.18177;RPR=9971,2921;RUN=1,1;SAF=9971,2923;SAP=21654.8,6350.22;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:72:0,20,52:0:0:20,52:695,1849:-190.974,-148.286,-142.266,-42.9808,0,-27.3272	1/1:281:0,279,0:0:0:279,0:9858,0:-684.715,-83.9874,0,-684.715,-83.9874,-684.715	1/2:185:0,89,96:0:0:89,96:3139,3445:-468.337,-276.051,-249.259,-192.598,0,-163.7	1/1:300:0,299,0:0:0:299,0:10555,0:-751.621,-90.008,0,-751.621,-90.008,-751.621	1/2:160:0,70,90:0:0:70,90:2501,3184:-403.903,-253.11,-232.038,-151.097,0,-124.005	1/2:78:0,41,37:0:0:41,37:1461,1328:-194.499,-106.641,-94.2988,-88.1725,0,-77.0344	1/1:194:0,191,0:0:0:191,0:6784,0:-482.614,-57.4967,0,-482.614,-57.4967,-482.614	1/2:344:0,197,146:0:0:197,146:6915,5229:-843.159,-417.91,-358.607,-425.293,0,-381.343	1/2:183:0,78,104:0:0:78,104:2765,3706:-464.432,-296.152,-272.672,-168.398,0,-137.091	1/2:147:1,48,98:1:32:48,98:1698,3490:-382.608,-276.178,-263.989,-104.488,0,-77.2482	1/2:33:0,17,16:0:0:17,16:609,576:-84.2944,-46.3387,-41.2212,-38.2741,0,-33.4576	1/1:65:0,65,0:0:0:65,0:2303,0:-159.381,-19.567,0,-159.381,-19.567,-159.381	1/2:66:0,24,42:0:0:24,42:847,1504:-173.299,-120.787,-113.562,-52.8163,0,-40.173	1/2:69:0,34,35:0:0:34,35:1207,1252:-173.257,-99.9936,-89.7585,-73.5742,0,-63.0381	1/1:76:0,76,0:0:0:76,0:2708,0:-189.897,-22.8783,0,-189.897,-22.8783,-189.897	1/2:41:0,20,21:0:0:20,21:709,750:-103.443,-59.8901,-53.8695,-43.8637,0,-37.5421	1/1:56:0,56,0:0:0:56,0:1988,0:-135.486,-16.8577,0,-135.486,-16.8577,-135.486	1/1:60:0,60,0:0:0:60,0:2131,0:-147.462,-18.0618,0,-147.462,-18.0618,-147.462	1/1:18:0,18,0:0:0:18,0:632,0:-44.6391,-5.41854,0,-44.6391,-5.41854,-44.6391	1/1:360:0,359,0:0:0:359,0:12633,0:-902.209,-108.07,0,-902.209,-108.07,-902.209	1/2:210:0,94,115:0:0:94,115:3331,4107:-529.194,-326.843,-298.546,-202.388,0,-167.769	1/1:128:0,127,0:0:0:127,0:4472,0:-324.477,-38.2308,0,-324.477,-38.2308,-324.477	1/2:131:0,63,67:0:0:63,67:2226,2403:-331.452,-192.022,-173.057,-139.48,0,-119.311	1/2:241:0,106,133:0:0:106,133:3768,4764:-605.923,-379.233,-347.324,-226.737,0,-186.7	1/2:156:0,59,96:0:0:59,96:2110,3415:-399.076,-271.207,-253.446,-127.881,0,-98.9821	1/1:551:0,542,6:0:0:542,6:19045,216:-1385.27,-163.158,0,-1368.08,-145.872,-1366.28	1/1:257:0,257,0:0:0:257,0:9139,0:-630.603,-77.3647,0,-630.603,-77.3647,-630.603	1/1:29:0,29,0:0:0:29,0:1018,0:-70.7064,-8.72987,0,-70.7064,-8.72987,-70.7064	1/2:347:0,130,213:0:0:130,213:4623,7621:-900.206,-603.572,-564.438,-296.7,0,-232.58	1/2:238:0,92,144:0:0:92,144:3221,5180:-609.903,-412.814,-385.119,-197.144,0,-153.796	1/1:146:0,141,4:0:0:141,4:5011,144:-354.317,-42.4452,0,-342.789,-30.8621,-341.585	1/2:4:0,1,3:0:0:1,3:36,108:-11.0977,-8.95573,-8.6547,-2.43517,0,-1.53208	1/1:10:0,10,0:0:0:10,0:358,0:-24.872,-3.0103,0,-24.872,-3.0103,-24.872	2/2:7:0,0,7:0:0:0,7:0,252:-22.6312,-22.6312,-22.6312,-2.10721,-2.10721,0	1/2:8:0,3,5:0:0:3,5:104,180:-21.2187,-14.761,-13.8579,-6.76139,0,-5.25624	1/1:4:0,4,0:0:0:4,0:144,0:-10.1239,-1.20412,0,-10.1239,-1.20412,-10.1239	1/2:216:0,95,121:0:0:95,121:3363,4330:-555.57,-342.817,-314.22,-213.064,0,-176.639	1/1:271:0,271,0:0:0:271,0:9508,0:-661.026,-81.5791,0,-661.026,-81.5791,-661.026	1/1:22:0,22,0:0:0:22,0:774,0:-53.3598,-6.62266,0,-53.3598,-6.62266,-53.3598	1/2:5:0,3,2:0:0:3,2:103,68:-12.0962,-5.75138,-4.84829,-6.65336,0,-6.0513	1/1:377:0,375,1:0:0:375,1:13232,36:-916.342,-112.886,0,-913.474,-109.979,-913.173	1/1:15:0,15,0:0:0:15,0:538,0:-36.7703,-4.51545,0,-36.7703,-4.51545,-36.7703	1/2:280:0,117,161:0:0:117,161:4122,5706:-702.42,-453.189,-417.968,-249.241,0,-200.775	1/2:86:0,32,54:0:0:32,54:1122,1935:-225.506,-154.846,-145.213,-70.9655,0,-54.7098	1/2:64:0,31,33:0:0:31,33:1106,1184:-164.524,-95.1687,-85.8368,-69.6717,0,-59.7377	1/2:140:0,51,89:0:0:51,89:1804,3162:-366.537,-251.088,-235.735,-115.757,0,-88.965	1/2:220:0,84,134:0:0:84,134:2958,4758:-561.37,-380.24,-354.954,-181.128,0,-140.79	1/1:268:0,268,0:0:0:268,0:9434,0:-670.385,-80.676,0,-670.385,-80.676,-670.385	1/1:217:0,217,0:0:0:217,0:7668,0:-542.413,-65.3235,0,-542.413,-65.3235,-542.413	1/2:258:0,137,120:0:0:137,120:4860,4308:-648.989,-344.86,-303.619,-304.168,0,-268.044	1/2:233:0,105,128:0:0:105,128:3743,4519:-597.295,-357.058,-325.45,-240.549,0,-202.018	1/2:5:0,3,2:0:0:3,2:107,72:-12.7707,-6.11657,-5.21348,-6.97886,0,-6.3768	1/1:266:0,265,0:0:0:265,0:9354,0:-649.948,-79.773,0,-649.948,-79.773,-649.948	1/1:36:0,35,1:0:0:35,1:1235,36:-90.7553,-10.5361,0,-87.9022,-7.33438,-87.6011	1/2:11:0,2,9:0:0:2,9:72,324:-30.5955,-26.2869,-25.6849,-4.59672,0,-1.88745	1/2:188:0,97,90:0:0:97,90:3415,3204:-463.673,-255.023,-22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chr06	4072473	.	A	G	55656.2	PASS	AB=0.550373;ABP=106.487;AC=45;AF=0.239362;AN=188;AO=2612;CIGAR=1X;DP=10318;DPB=10318;DPRA=1.19767;EPP=5674.9;EPPR=16725.5;GTI=1;LEN=1;MEANALT=1.01724;MQM=51.0858;MQMR=53.6448;NS=94;NUMALT=1;ODDS=7.33196;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93214;QR=275697;RO=7705;RPL=547;RPP=1918.7;RPPR=6141.44;RPR=2065;RUN=1;SAF=547;SAP=1918.7;SAR=2065;SRF=1518;SRP=6146.7;SRR=6187;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:94:41,53:41:1476:53:1900:-141.954,0,-104.769	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/1:176:91,85:91:3256:85:3052:-220.868,0,-240.24	0/0:172:172,0:172:6153:0:0:0,-51.7772,-553.802	0/1:72:40,32:40:1427:32:1139:-80.8108,0,-107.04	0/1:45:20,25:20:712:25:888:-65.4458,0,-50.8462	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.539	0/1:190:88,102:88:3156:102:3637:-268.541,0,-227.017	0/1:135:77,58:77:2748:58:2071:-144.98,0,-206.742	0/1:81:54,27:54:1931:27:968:-62.908,0,-149.671	0/1:51:14,37:14:504:37:1328:-104.01,0,-30.3362	0/0:86:86,0:86:3048:0:0:0,-25.8886,-274.523	0/1:64:20,44:20:716:44:1550:-119.232,0,-45.5018	0/1:68:29,39:29:1031:39:1404:-106.006,0,-72.6182	0/0:65:65,0:65:2319:0:0:0,-19.5669,-207.319	0/1:73:29,44:29:1029:44:1568:-118.662,0,-70.9378	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.794	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7961	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.905	0/0:137:136,1:136:4884:1:36:0,-37.6454,-436.087	0/1:162:80,82:80:2863:82:2927:-214.147,0,-209.125	0/0:218:218,0:218:7812:0:0:0,-65.6245,-619.516	0/1:129:50,79:50:1783:79:2827:-215.072,0,-121.904	0/1:60:35,25:35:1248:25:883:-61.2978,0,-94.5399	0/1:107:43,64:43:1527:64:2268:-171.507,0,-105.512	0/0:750:744,6:744:26582:6:216:0,-206.426,-2034.51	0/0:248:248,0:248:8853:0:0:0,-74.6554,-796.572	0/0:38:38,0:38:1368:0:0:0,-11.4391,-122.633	0/1:586:219,367:219:7848:367:13116:-982.883,0,-449.027	0/1:81:40,41:40:1436:41:1472:-107.831,0,-105.137	0/0:61:58,3:58:2084:3:104:0,-8.66584,-178.065	0/1:8:2,6:2:72:6:212:-16.9913,0,-4.42602	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.11	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.87105	0/1:22:6,16:6:216:16:564:-43.9835,0,-13.1596	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.897	0/1:361:158,203:158:5634:203:7275:-534.313,0,-337.189	0/0:117:117,0:117:4191:0:0:0,-35.2205,-377.345	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.329	0/1:6:4,2:4:144:2:72:-5.02085,0,-11.5074	0/0:117:116,1:116:4172:1:36:0,-31.6273,-371.301	0/0:22:22,0:22:768:0:0:0,-6.62266,-69.4295	0/1:219:94,125:94:3347:125:4458:-333.287,0,-235.476	0/1:63:29,34:29:1044:34:1194:-87.959,0,-75.3007	0/1:44:25,19:25:900:19:680:-48.2302,0,-68.0627	0/1:309:143,166:143:5113:166:5917:-430.084,0,-333.937	0/1:123:80,43:80:2876:43:1531:-100.54,0,-221.745	0/0:231:231,0:231:8259:0:0:0,-69.5379,-743.087	0/0:92:92,0:92:3296:0:0:0,-27.6948,-295.663	0/1:134:53,81:53:1895:81:2907:-220.895,0,-130.471	0/1:312:137,175:137:4928:175:6256:-456.095,0,-283.321	1/1:3:0,3:0:0:3:108:-10.0679,-0.90309,0	0/0:108:107,1:107:3831:1:36:0,-28.922,-341.341	0/0:82:81,1:81:2891:1:36:0,-21.1818,-235.225	0/1:13:2,11:2:72:11:387:-31.1693,0,-2.92333	0/1:197:89,108:89:3183:108:3821:-283.938,0,-227.377	0/0:49:49,0:49:1742:0:0:0,-14.7505,-157.033	0/1:14:3,11:3:108:11:396:-31.7583,0,-5.05615	0/1:21:12,9:12:428:9:320:-22.4684,0,-31.2737	0/1:84:36,48:36:1288:48:1724:-129.15,0,-90.804	0/0:70:68,2:68:2429:2:72:0,-14.2403,-211.987	0/1:10:2,8:2:72:8:284:-22.6834,0,-3.82642	0/0:495:495,0:495:17711:0:0:0,-149.01,-1363.4	0/0:101:101,0:101:3619:0:0:0,-30.404,-325.893	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.653	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:111:110,1:110:3948:1:36:0,-29.8251,-351.629	0/0:200:196,3:196:7035:3:108:0,-50.1966,-622.937	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.104	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.161	0/0:128:127,1:127:4564:1:36:0,-35.0291,-346.236	0/1:40:12,28:12:432:28:996:-77.7651,0,-27.1576	0/0:94:94,0:94:3357:0:0:0,-28.2968,-302.256	0/1:111:62,49:62:2211:49:1751:-123.572,0,-165.806	0/1:163:77,86:77:2751:86:3084:-227.764,0,-198.74	0/0:133:133,0:133:4758:0:0:0,-40.037,-427.95	0/0:132:132,0:132:4731:0:0:0,-39.736,-425.598	0/0:61:60,1:60:2143:1:36:0,-14.9752,-189.716	0/1:18:4,14:4:144:14:500:-39.8077,0,-7.87703	0/0:117:115,2:115:4110:2:68:0,-28.7696,-363.448	0/0:119:119,0:119:4243:0:0:0,-35.8226,-381.974	0/0:174:174,0:174:6244:0:0:0,-52.3792,-562.022	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.027	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.222	0/1:60:27,33:27:972:33:1173:-87.4905,0,-69.7292	0/0:105:104,1:104:3726:1:36:0,-28.0125,-331.926	0/1:15:7,8:7:252:8:284:-20.3644,0,-18.5126	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.106	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.711	0/0:51:50,1:50:1788:1:36:0,-11.7594,-157.455	0/1:100:54,46:54:1907:46:1633:-116.417,0,-141.764	0/1:70:20,50:20:720:50:1761:-137.177,0,-44.052	0/0:126:126,0:126:4520:0:0:0,-37.9298,-404.976	0/0:111:111,0:111:3966:0:0:0,-33.4143,-357.026
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chr06	4084667	.	T	C	22938.8	PASS	AB=0.482629;ABP=10.7051;AC=41;AF=0.222826;AN=184;AO=1429;CIGAR=1X;DP=7672;DPB=7672;DPRA=1.14292;EPP=3106.04;EPPR=13542.1;GTI=2;LEN=1;MEANALT=1;MQM=59.816;MQMR=59.9635;NS=92;NUMALT=1;ODDS=0.919881;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50646;QR=222909;RO=6243;RPL=1429;RPP=3106.04;RPPR=13542.1;RPR=0;RUN=1;SAF=1429;SAP=3106.04;SAR=0;SRF=6243;SRP=13559.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:9,10:9:324:10:360:-27.0238,0,-23.7863	0/0:88:88,0:88:3137:0:0:0,-26.4906,-282.555	0/1:67:30,37:30:1067:37:1310:-98.0302,0,-76.1722	0/0:221:220,1:220:7846:1:36:0,-62.9294,-702.57	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/1:30:9,21:9:324:21:747:-58.523,0,-20.475	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/1:122:64,58:64:2268:58:2062:-149.018,0,-167.655	0/1:42:23,19:23:794:19:671:-48.0725,0,-59.13	0/1:150:80,70:80:2838:70:2504:-180.458,0,-210.476	0/1:16:12,4:12:423:4:135:-7.66603,0,-33.5886	0/0:62:62,0:62:2172:0:0:0,-18.6639,-195.742	0/1:66:28,38:28:1004:38:1301:-97.5015,0,-70.8079	0/1:42:28,14:28:1008:14:496:-32.3294,0,-78.3931	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:35:26,9:26:928:9:324:-18.9698,0,-73.3022	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.21	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/0:29:28,1:28:1000:1:36:0,-5.13159,-86.7171	0/0:111:111,0:111:3945:0:0:0,-33.4143,-355.243	0/1:111:52,59:52:1859:59:2092:-155.13,0,-134.175	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:66:40,26:40:1419:26:923:-63.5188,0,-108.139	0/1:109:62,47:62:2232:47:1671:-117.861,0,-168.331	0/1:31:15,16:15:528:16:572:-42.4799,0,-38.5194	0/0:328:327,1:327:11665:1:21:0,-96.6379,-1047.62	0/0:151:151,0:151:5402:0:0:0,-45.4555,-486.31	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:255:125,130:125:4471:130:4598:-337.203,0,-325.797	0/1:131:63,68:63:2264:68:2423:-178.887,0,-164.587	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	.:.:.:.:.:.:.:.	0/1:4:2,2:2:63:2:72:-5.6326,0,-4.77903	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:222:117,105:117:4166:105:3713:-267.542,0,-308.295	0/0:131:131,0:131:4691:0:0:0,-39.4349,-422.349	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:147:147,0:147:5244:0:0:0,-44.2514,-472.092	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3671	0/1:77:43,34:43:1539:34:1220:-86.9244,0,-115.623	0/1:79:41,38:41:1472:38:1360:-98.9099,0,-108.995	0/1:63:36,27:36:1268:27:956:-67.3908,0,-95.4551	0/1:43:28,15:28:1004:15:536:-35.3592,0,-77.7316	0/1:103:58,45:58:2061:45:1582:-111.662,0,-154.753	0/0:205:205,0:205:7330:0:0:0,-61.7111,-659.747	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/1:158:92,66:92:3308:66:2332:-162.573,0,-250.372	0/1:118:51,67:51:1827:67:2408:-181.455,0,-129.189	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:105:105,0:105:3728:0:0:0,-31.6081,-335.716	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4419	0/1:14:6,8:6:216:8:280:-21.324,0,-15.5761	0/1:190:106,84:106:3774:84:2952:-208.703,0,-282.577	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:11:7,4:7:244:4:144:-10.0023,0,-18.9881	0/1:9:1,8:1:36:8:273:-22.1909,0,-0.889005	0/1:32:18,14:18:648:14:500:-35.7017,0,-49.0189	0/0:97:97,0:97:3471:0:0:0,-29.1999,-312.601	.:.:.:.:.:.:.:.	0/0:334:333,1:333:11939:1:36:0,-96.9457,-1070.27	0/0:132:131,1:131:4677:1:36:0,-36.1403,-417.495	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433	0/0:56:56,0:56:1971:0:0:0,-16.8577,-177.656	0/0:113:110,3:110:3932:3:108:0,-23.9412,-343.995	0/0:72:70,2:70:2492:2:72:0,-14.8374,-217.666	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.16	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:110:53,57:53:1891:57:2014:-148.416,0,-137.354	0/1:93:43,50:43:1531:50:1784:-132.845,0,-110.087	0/0:174:174,0:174:6224:0:0:0,-52.3792,-560.254	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:139:138,1:138:4939:1:36:0,-38.2449,-441.06	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:107:107,0:107:3813:0:0:0,-32.2102,-343.366	0/0:120:120,0:120:4307:0:0:0,-36.1236,-387.805	0/0:150:150,0:150:5388:0:0:0,-45.1545,-485.044	0/0:118:117,1:117:4170:1:36:0,-31.9233,-371.885	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:102:55,47:55:1964:47:1648:-117.897,0,-146.33	0/0:166:166,0:166:5918:0:0:0,-49.971,-531.953	0/1:48:24,24:24:827:24:845:-61.9161,0,-60.2929	0/0:72:72,0:72:2541:0:0:0,-21.6742,-228.941	0/0:65:65,0:65:2297:0:0:0,-19.5669,-206.719	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/1:51:25,26:25:896:26:928:-68.4857,0,-65.6078	0/1:65:18,47:18:648:47:1669:-130.84,0,-39.0849	0/0:114:114,0:114:4088:0:0:0,-34.3174,-368.105	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.035
chr06	4156296	.	G	A	49463	PASS	AB=0.508471;ABP=5.65899;AC=42;AF=0.225806;AN=186;AO=2180;CIGAR=1X;DP=10090;DPB=10090;DPRA=1.18907;EPP=5.30529;EPPR=152.99;GTI=0;LEN=1;MEANALT=1.03571;MQM=55.6913;MQMR=59.2858;NS=93;NUMALT=1;ODDS=0.902186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77619;QR=279085;RO=7907;RPL=12;RPP=4633.16;RPPR=16870.2;RPR=2168;RUN=1;SAF=1126;SAP=8.17402;SAR=1054;SRF=4358;SRP=182.748;SRR=3549;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:11,13:11:392:13:460:-34.4221,0,-28.3902	0/0:107:107,0:107:3786:0:0:0,-32.2102,-340.821	0/1:168:86,82:86:3058:82:2911:-211.173,0,-224.854	0/0:91:90,1:90:3166:1:36:0,-23.8006,-281.549	0/1:36:15,21:15:523:21:744:-56.2075,0,-36.559	0/1:40:16,24:16:559:24:860:-65.5219,0,-38.5309	0/0:88:87,0:87:3056:0:0:0,-26.1896,-274.688	0/1:133:72,61:72:2519:61:2158:-153.881,0,-186.285	0/1:84:45,39:45:1579:39:1356:-96.9359,0,-117.046	0/1:63:30,32:30:1072:32:1137:-83.2309,0,-77.8914	0/1:257:133,124:133:4732:124:4430:-318.843,0,-348.652	0/0:165:165,0:165:5771:0:0:0,-49.6699,-519.21	0/1:187:89,98:89:3138:98:3512:-258.801,0,-226.264	0/1:291:154,137:154:5483:137:4878:-349.915,0,-405.635	0/0:189:189,0:189:6679:0:0:0,-56.8947,-601.152	0/1:148:77,71:77:2714:71:2548:-184.079,0,-199.887	0/0:210:210,0:210:7430:0:0:0,-63.2163,-667.533	0/0:171:170,1:170:6025:1:36:0,-47.8779,-538.406	0/0:140:140,0:140:4980:0:0:0,-42.1442,-447.501	0/0:104:104,0:104:3623:0:0:0,-31.3071,-326.225	0/1:83:48,35:48:1673:35:1247:-87.2062,0,-125.838	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.963	0/1:38:16,22:16:563:22:788:-59.7964,0,-39.5577	0/1:86:46,40:46:1656:40:1403:-100.403,0,-123.368	0/1:52:23,29:23:796:29:1027:-76.8762,0,-56.3005	0/0:121:119,2:119:4186:2:72:0,-29.5969,-370.083	0/0:101:101,0:101:3554:0:0:0,-30.404,-319.747	0/0:78:77,1:77:2734:1:36:0,-19.9776,-242.721	0/1:188:67,121:67:2338:121:4305:-330.725,0,-154.071	0/1:45:18,27:18:639:27:948:-71.9358,0,-44.256	0/0:59:59,0:59:2064:0:0:0,-17.7608,-185.985	0/1:6:4,2:4:140:2:68:-4.64293,0,-11.1384	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	.:.:.:.:.:.:.:.	0/1:3:2,1:2:68:1:32:-2.28834,0,-5.55462	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8888	0/1:389:184,205:184:6400:205:7311:-538.49,0,-458.693	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.218	0/0:199:199,0:199:7047:0:0:0,-59.905,-632.412	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:109:109,0:109:3829:0:0:0,-32.8123,-344.605	0/0:122:120,2:120:4222:2:72:0,-29.9643,-373.324	0/1:112:55,57:55:1943:57:2032:-149.091,0,-141.427	0/1:156:75,81:75:2604:81:2908:-214.768,0,-187.646	0/1:128:70,58:70:2487:58:2080:-148.647,0,-185.552	0/1:54:19,35:19:667:35:1247:-96.262,0,-44.099	0/1:82:37,45:37:1302:45:1599:-118.416,0,-92.7242	0/0:101:101,0:101:3586:0:0:0,-30.404,-322.835	0/0:71:71,0:71:2526:0:0:0,-21.3731,-227.535	0/1:96:44,52:44:1548:52:1855:-138.035,0,-110.708	0/1:107:48,59:48:1692:59:2116:-158.335,0,-120.308	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.6326	0/0:98:98,0:98:3434:0:0:0,-29.5009,-309.181	0/0:33:33,0:33:1166:0:0:0,-9.93399,-104.2	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:74:40,34:40:1408:34:1216:-87.2638,0,-104.705	0/0:28:28,0:28:974:0:0:0,-8.42884,-87.9482	0/1:14:10,4:10:356:4:140:-8.72536,0,-28.1668	0/1:11:5,6:5:180:6:200:-15.0097,0,-13.2407	0/1:61:36,25:36:1253:25:896:-62.2773,0,-94.6999	0/0:261:260,1:260:9208:1:35:0,-75.1881,-825.235	0/1:6:4,2:4:144:2:72:-5.02085,0,-11.5074	0/0:59:59,0:59:2078:0:0:0,-17.7608,-187.287	0/0:96:96,0:96:3419:0:0:0,-28.8989,-307.446	0/0:65:65,0:65:2299:0:0:0,-19.5669,-207.171	0/0:48:48,0:48:1701:0:0:0,-14.4494,-152.883	0/0:81:80,1:80:2812:1:36:0,-20.7852,-249.682	0/0:81:80,1:80:2813:1:36:0,-20.7852,-249.578	0/0:167:167,0:167:5966:0:0:0,-50.272,-536.893	0/0:71:71,0:71:2519:0:0:0,-21.3731,-226.942	0/0:257:256,1:256:9088:1:36:0,-73.769,-813.678	0/1:19:3,16:3:104:16:567:-45.5578,0,-3.98324	0/0:49:49,0:49:1737:0:0:0,-14.7505,-156.584	0/1:64:42,22:42:1496:22:784:-51.5651,0,-115.655	0/1:129:70,58:70:2483:58:2053:-144.943,0,-184.5	0/0:111:111,0:111:3900:0:0:0,-33.4143,-351.156	0/0:95:95,0:95:3349:0:0:0,-28.5978,-301.259	0/0:73:73,0:73:2580:0:0:0,-21.9752,-232.27	0/1:9:6,3:6:216:3:108:-7.32948,0,-17.0776	0/0:97:97,0:97:3451:0:0:0,-29.1999,-310.66	0/0:58:58,0:58:2047:0:0:0,-17.4597,-184.367	0/0:154:153,1:153:5346:1:36:0,-42.7603,-476.856	0/0:215:213,2:213:7507:2:72:0,-57.8944,-667.765	0/0:183:183,0:183:6447:0:0:0,-55.0885,-580.187	0/1:244:132,112:132:4634:112:3934:-280.104,0,-343.727	0/0:302:300,2:300:10568:2:72:0,-84.0979,-944.156	0/1:92:49,43:49:1707:43:1534:-110.201,0,-126.204	0/0:146:144,2:144:5048:2:72:0,-37.1137,-447.34	0/0:156:155,1:155:5434:1:36:0,-43.3624,-484.674	0/0:199:199,0:199:7055:0:0:0,-59.905,-633.824	0/1:317:153,164:153:5471:164:5861:-429.582,0,-396.948	0/1:148:50,98:50:1780:98:3503:-270.321,0,-115.611	0/0:33:33,0:33:1163:0:0:0,-9.93399,-104.976	0/0:288:288,0:288:10170:0:0:0,-86.6966,-914.963
chr06	4157462	.	GCCG	ACCG	25386.1	PASS	AB=0.48096;ABP=14.4213;AC=45;AF=0.239362;AN=188;AO=1757;CIGAR=1X3M;DP=9821;DPB=9821;DPRA=1.10425;EPP=3818.29;EPPR=17411.7;GTI=6;LEN=1;MEANALT=1.48148;MQM=59.93;MQMR=59.9844;NS=94;NUMALT=1;ODDS=0.243671;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59071;QR=284680;RO=8021;RPL=0;RPP=3818.29;RPPR=17420.4;RPR=1757;RUN=1;SAF=1757;SAP=3818.29;SAR=0;SRF=8020;SRP=17411.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:14,9:14:497:9:309:-21.217,0,-38.1407	0/0:333:330,1:330:11660:1:36:0,-96.4025,-1045.63	0/1:275:168,106:168:5956:106:3589:-240.377,0,-453.313	0/0:228:227,0:227:8020:0:0:0,-68.3338,-721.47	0/1:60:9,51:9:318:51:1669:-132.417,0,-10.8986	0/1:69:24,44:24:861:44:1435:-108.704,0,-57.0878	0/0:180:177,2:177:6284:2:72:0,-47.4075,-558.823	0/1:193:103,88:103:3656:88:3010:-213.082,0,-271.388	0/1:76:34,37:34:1209:37:1248:-90.9004,0,-87.4029	0/1:119:54,65:54:1922:65:2244:-166.394,0,-137.435	0/1:53:31,21:31:1076:21:662:-44.0045,0,-81.2777	0/0:32:31,0:31:1108:0:0:0,-9.33193,-99.6718	0/1:40:20,20:20:703:20:666:-48.2092,0,-51.5523	0/1:60:33,27:33:1176:27:930:-65.9382,0,-88.0857	0/0:39:39,0:39:1382:0:0:0,-11.7402,-124.678	0/1:41:20,21:20:708:21:676:-48.7976,0,-51.7029	0/0:59:59,0:59:2075:0:0:0,-17.7608,-187.021	0/0:27:26,0:26:911:0:0:0,-7.82678,-81.9449	0/0:62:62,0:62:2214:0:0:0,-18.6639,-199.525	0/0:252:251,1:251:8894:1:21:0,-73.7596,-798.354	0/1:139:68,71:68:2401:71:2382:-172.782,0,-174.504	0/0:121:121,0:121:4259:0:0:0,-36.4246,-383.491	0/1:24:9,15:9:320:15:471:-35.4632,0,-21.9176	0/1:108:67,41:67:2388:41:1460:-99.1848,0,-182.665	0/1:63:32,31:32:1125:31:1070:-77.6387,0,-82.591	0/0:354:353,1:353:12529:1:36:0,-102.966,-1123.85	0/0:235:235,0:235:8350:0:0:0,-70.742,-751.514	0/0:14:14,0:14:502:0:0:0,-4.21442,-45.5173	0/1:310:142,165:142:5045:165:5710:-421.24,0,-361.423	0/1:241:164,76:164:5830:76:2520:-154.433,0,-452.207	0/0:117:116,0:116:4120:0:0:0,-34.9195,-370.627	0/1:20:11,9:11:394:9:264:-18.0247,0,-29.7809	0/0:18:18,0:18:645:0:0:0,-5.41854,-58.381	0/1:7:3,4:3:107:4:129:-9.82045,0,-7.87496	0/1:16:9,7:9:321:7:248:-17.8477,0,-24.417	0/0:13:13,0:13:462:0:0:0,-3.91339,-41.9162	0/1:93:53,38:53:1898:38:1318:-91.1625,0,-143.345	0/0:206:206,0:206:7340:0:0:0,-62.0122,-660.65	0/0:55:55,0:55:1951:0:0:0,-16.5566,-175.866	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:263:263,0:263:9387:0:0:0,-79.1709,-844.798	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.691	0/1:178:89,87:89:3188:87:2764:-195.637,0,-233.803	0/1:36:19,16:19:680:16:526:-36.7574,0,-50.6337	0/1:41:20,21:20:716:21:676:-48.7976,0,-52.3556	0/1:77:36,41:36:1280:41:1391:-102.277,0,-92.3234	0/1:119:62,57:62:2207:57:1937:-138.775,0,-163.073	0/0:274:270,1:270:9549:1:36:0,-78.3282,-855.817	0/0:151:150,0:150:5317:0:0:0,-45.1545,-478.309	0/1:194:92,101:92:3290:101:3343:-242.624,0,-237.861	0/1:154:71,83:71:2532:83:2936:-218.116,0,-181.773	0/1:14:10,4:10:342:4:129:-7.71324,0,-26.8948	0/0:206:204,0:204:7285:0:0:0,-61.4101,-655.345	0/0:65:65,0:65:2325:0:0:0,-19.5669,-209.51	0/1:29:13,16:13:454:16:499:-36.4763,0,-32.462	0/1:196:93,101:93:3310:101:3486:-255.192,0,-239.359	0/0:23:23,0:23:814:0:0:0,-6.92369,-73.5807	0/1:20:16,4:16:570:4:144:-7.29302,0,-45.6118	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:66:37,29:37:1312:29:938:-64.8431,0,-98.5143	0/0:69:69,0:69:2458:0:0:0,-20.7711,-221.474	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:191:191,0:191:6818:0:0:0,-57.4967,-613.694	0/0:205:202,2:202:7145:2:72:0,-54.8333,-636.33	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/0:108:108,0:108:3799:0:0:0,-32.5112,-342.112	0/0:165:165,0:165:5821:0:0:0,-49.6699,-523.994	0/0:256:255,1:255:9007:1:21:0,-74.9637,-808.519	0/0:23:23,0:23:821:0:0:0,-6.92369,-74.2128	0/0:130:129,0:129:4575:0:0:0,-38.8329,-411.558	0/0:36:36,0:36:1261:0:0:0,-10.8371,-113.79	0/1:19:13,6:13:450:6:216:-14.0709,0,-35.1089	0/0:161:160,1:160:5699:1:32:0,-45.2665,-509.832	0/1:98:48,49:48:1707:49:1643:-118.584,0,-124.356	0/1:114:54,59:54:1910:59:2047:-150.143,0,-137.879	0/0:191:191,0:191:6750:0:0:0,-57.4967,-607.58	0/0:81:81,0:81:2863:0:0:0,-24.3834,-257.909	0/0:124:121,1:121:4259:1:32:0,-33.8596,-380.266	0/1:10:7,3:7:251:3:78:-4.26799,0,-19.9276	0/0:141:140,0:140:4976:0:0:0,-42.1442,-447.63	0/0:176:176,0:176:6273:0:0:0,-52.9813,-564.668	0/0:215:214,0:214:7609:0:0:0,-64.4204,-684.492	0/0:74:74,0:74:2629:0:0:0,-22.2762,-236.857	0/0:36:36,0:36:1290:0:0:0,-10.8371,-116.404	0/1:44:21,23:21:753:23:745:-54.0998,0,-54.8514	0/0:86:86,0:86:3055:0:0:0,-25.8886,-275.18	0/1:41:19,22:19:680:22:723:-53.0322,0,-49.1869	0/0:34:34,0:34:1213:0:0:0,-10.235,-109.476	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.071	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.166	0/1:89:41,48:41:1451:48:1617:-119.016,0,-104.094	0/1:40:18,22:18:645:22:585:-40.8613,0,-46.3399	0/0:113:112,1:112:4004:1:32:0,-30.8171,-357.35	0/0:65:65,0:65:2294:0:0:0,-19.5669,-206.721
chr06	4157512	.	T	C	70824.8	PASS	AB=0.51826;ABP=20.4571;AC=44;AF=0.234043;AN=188;AO=3152;CIGAR=1X;DP=15054;DPB=15054;DPRA=1.17281;EPP=6847.49;EPPR=25579.3;GTI=0;LEN=1;MEANALT=1.04918;MQM=59.9527;MQMR=59.9927;NS=94;NUMALT=1;ODDS=4.47564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111857;QR=424569;RO=11898;RPL=1912;RPP=314.115;RPPR=2300.47;RPR=1240;RUN=1;SAF=1912;SAP=314.115;SAR=1240;SRF=7693;SRP=2223.42;SRR=4205;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:16,8:16:568:8:275:-17.8588,0,-44.2271	0/0:319:317,2:317:11311:2:72:0,-89.1918,-1011.04	0/1:273:157,116:157:5581:116:4122:-288.982,0,-420.235	0/0:361:361,0:361:12923:0:0:0,-108.672,-1162.88	0/1:83:14,69:14:500:69:2471:-197.658,0,-20.3507	0/1:78:27,51:27:964:51:1811:-139.782,0,-63.5965	0/0:279:277,2:277:9856:2:72:0,-77.1506,-880.15	0/1:196:101,95:101:3601:95:3356:-243.235,0,-265.286	0/1:80:32,48:32:1133:48:1701:-129.292,0,-78.1943	0/1:188:86,102:86:3067:102:3610:-268.51,0,-219.665	0/1:149:81,68:81:2887:68:2424:-173.477,0,-215.213	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:42:20,22:20:712:22:769:-56.8853,0,-51.7634	0/1:169:94,75:94:3348:75:2672:-189.844,0,-250.664	0/0:122:122,0:122:4351:0:0:0,-36.7257,-391.763	0/1:96:42,53:42:1487:53:1896:-142.108,0,-105.313	0/0:57:56,0:56:1973:0:0:0,-16.8577,-177.483	0/0:26:26,0:26:916:0:0:0,-7.82678,-82.7565	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:356:355,1:355:12663:1:36:0,-103.568,-1135.9	0/1:249:105,144:105:3726:144:5106:-384.728,0,-260.584	0/0:168:167,1:167:5971:1:36:0,-46.9748,-533.899	0/1:84:42,42:42:1512:42:1512:-111.088,0,-111.088	0/1:216:117,99:117:4187:99:3527:-252.618,0,-311.984	0/1:134:60,74:60:2140:74:2629:-196.518,0,-152.528	0/0:473:471,2:471:16812:2:68:0,-135.929,-1506.28	0/0:422:422,0:422:15045:0:0:0,-127.035,-1353.78	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:462:211,251:211:7548:251:8867:-658.93,0,-540.285	0/1:338:203,135:203:7234:135:4802:-330.589,0,-549.369	0/0:211:210,1:210:7500:1:36:0,-59.9191,-671.447	0/1:27:17,10:17:603:10:347:-23.4358,0,-46.4717	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:8:3,5:3:108:5:171:-13.3172,0,-7.66693	0/1:17:9,8:9:324:8:280:-20.4218,0,-24.3883	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/1:284:149,135:149:5332:135:4800:-346.662,0,-394.521	0/0:289:287,1:287:10251:1:36:0,-83.4582,-918.917	0/0:50:50,0:50:1778:0:0:0,-15.0515,-160.301	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:361:361,0:361:12910:0:0:0,-108.672,-1161.72	0/0:91:91,0:91:3235:0:0:0,-27.3937,-291.373	0/1:332:138,193:138:4893:193:6866:-517.997,0,-340.525	0/1:94:47,47:47:1673:47:1667:-122.02,0,-122.558	0/1:79:32,47:32:1136:47:1622:-122.483,0,-78.7675	0/1:158:74,84:74:2647:84:2962:-219.225,0,-190.913	0/1:118:55,63:55:1968:63:2230:-165.44,0,-141.874	0/0:373:371,2:371:13244:2:72:0,-105.447,-1184.87	0/0:230:229,1:229:8156:1:36:0,-65.6386,-730.46	0/1:272:121,151:121:4335:151:5379:-402.36,0,-308.444	0/1:300:148,152:148:5307:152:5388:-394.743,0,-387.454	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	0/0:198:198,0:198:7069:0:0:0,-59.6039,-636.271	0/0:80:80,0:80:2857:0:0:0,-24.0824,-257.366	0/1:29:11,18:11:392:18:640:-49.1994,0,-26.8902	0/1:279:130,149:130:4644:149:5318:-394.767,0,-334.136	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/1:24:17,7:17:612:7:248:-15.4395,0,-48.1887	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6511	0/1:133:75,58:75:2684:58:2041:-143.922,0,-201.768	0/0:195:195,0:195:6996:0:0:0,-58.7008,-629.701	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:289:289,0:289:10332:0:0:0,-86.9977,-929.803	0/0:313:311,2:311:11092:2:72:0,-87.3857,-991.338	0/0:140:140,0:140:5007:0:0:0,-42.1442,-450.777	0/0:164:159,5:159:5658:5:180:0,-32.8169,-492.791	0/0:184:182,2:182:6480:2:63:0,-49.4064,-577.218	0/0:272:271,1:271:9630:1:36:0,-78.2819,-863.058	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.995	0/0:122:122,0:122:4326:0:0:0,-36.7257,-389.519	0/0:125:125,0:125:4475:0:0:0,-37.6287,-402.919	0/1:47:27,20:27:968:20:707:-49.8062,0,-73.289	0/0:160:159,1:159:5695:1:36:0,-44.5665,-509.069	0/1:103:48,55:48:1699:55:1952:-144.947,0,-122.189	0/1:237:113,124:113:4039:124:4392:-324.104,0,-292.354	0/0:277:277,0:277:9882:0:0:0,-83.3853,-889.323	0/0:97:97,0:97:3466:0:0:0,-29.1999,-312.151	0/0:119:118,1:118:4185:1:36:0,-32.2243,-373.235	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/0:188:188,0:188:6728:0:0:0,-56.5936,-605.595	0/0:166:166,0:166:5900:0:0:0,-49.971,-531.113	0/0:387:387,0:387:13848:0:0:0,-116.499,-1246.09	0/0:159:159,0:159:5673:0:0:0,-47.8638,-510.689	0/0:106:106,0:106:3782:0:0:0,-31.9092,-340.579	0/1:134:59,75:59:2098:75:2666:-199.847,0,-148.75	0/0:199:197,2:197:7010:2:72:0,-53.0682,-624.131	0/1:40:18,22:18:644:22:788:-59.2036,0,-46.2494	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.575	0/0:38:38,0:38:1338:0:0:0,-11.4391,-120.718	0/0:151:151,0:151:5396:0:0:0,-45.4555,-485.763	0/1:239:105,134:105:3755:134:4747:-355.444,0,-266.203	0/1:124:48,76:48:1724:76:2701:-206.005,0,-118.118	0/0:169:166,3:166:5916:3:108:0,-40.7989,-522.474	0/0:176:176,0:176:6300:0:0:0,-52.9813,-567.093
chr06	4157527	.	T	G	164071	PASS	AB=0.47307;ABP=26.7525;AC=145;AF=0.771277;AN=188;AO=6570;CIGAR=1X;DP=8567;DPB=8567;DPRA=0;EPP=13864.3;EPPR=4291.74;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9924;MQMR=59.9684;NS=94;NUMALT=1;ODDS=3.33433;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232588;QR=71133;RO=1991;RPL=1069;RPP=6495.16;RPPR=1770.43;RPR=5501;RUN=1;SAF=1022;SAP=6773.47;SAR=5548;SRF=355;SRP=1792.71;SRR=1636;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:6,20:6:212:20:703:-55.7667,0,-11.598	1/1:52:0,52:0:0:52:1837:-165.609,-15.6536,0	0/1:106:59,47:59:2086:47:1671:-118.767,0,-156.097	1/1:149:0,149:0:0:149:5269:-474.347,-44.8535,0	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	0/1:36:11,25:11:396:25:877:-68.4081,0,-25.1457	1/1:107:0,107:0:0:107:3805:-342.647,-32.2102,0	0/1:104:77,26:77:2749:26:928:-52.6167,0,-216.404	0/1:74:16,58:16:572:58:2061:-163.483,0,-29.5372	0/1:69:34,33:34:1201:33:1184:-86.3289,0,-87.8652	0/1:99:47,52:47:1666:52:1856:-137.518,0,-120.424	1/1:81:0,81:0:0:81:2861:-257.728,-24.3834,0	0/1:88:45,43:45:1607:43:1528:-111.322,0,-118.429	0/1:111:47,64:47:1663:64:2233:-167.817,0,-116.542	1/1:85:0,85:0:0:85:3013:-271.402,-25.5876,0	0/1:55:32,23:32:1144:23:800:-55.7591,0,-86.7129	1/1:90:0,89:0:0:89:3138:-282.288,-26.7917,0	1/1:43:0,43:0:0:43:1509:-136.101,-12.9443,0	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:118:0,118:0:0:118:4158:-374.403,-35.5215,0	0/1:114:70,44:70:2516:44:1558:-106.193,0,-192.374	1/1:162:1,161:1:36:161:5725:-511.772,-45.1686,0	0/1:57:26,31:26:928:31:1116:-83.593,0,-66.6795	0/1:110:56,54:56:2008:54:1932:-141.043,0,-147.88	0/1:73:42,31:42:1504:31:1082:-75.7111,0,-113.679	1/1:469:2,467:2:72:467:16561:-1483.34,-134.346,0	1/1:196:1,195:1:36:195:6918:-619.091,-55.4036,0	1/1:32:0,32:0:0:32:1131:-102.098,-9.63296,0	0/1:459:255,203:255:9108:203:7215:-511.269,0,-681.534	0/1:94:50,44:50:1788:44:1548:-111.312,0,-132.906	1/1:98:1,97:1:36:97:3395:-302.165,-25.9027,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:20:0,20:0:0:20:698:-63.1414,-6.0206,0	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:286:140,146:140:4976:146:5176:-379.887,0,-361.898	1/1:93:1,92:1:36:92:3260:-290.018,-24.3975,0	1/1:85:0,85:0:0:85:3016:-271.673,-25.5876,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:108:0,108:0:0:108:3811:-343.188,-32.5112,0	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	0/1:153:103,50:103:3696:50:1768:-113.343,0,-286.784	0/1:59:29,29:29:1036:29:1008:-73.2089,0,-75.7344	0/1:40:26,14:26:932:14:485:-31.9358,0,-72.1577	0/1:154:85,69:85:3032:69:2460:-175.296,0,-226.729	0/1:105:57,48:57:2044:48:1694:-121.137,0,-152.624	1/1:116:0,116:0:0:116:4085:-367.832,-34.9195,0	1/1:82:0,82:0:0:82:2888:-260.154,-24.6845,0	0/1:78:44,34:44:1572:34:1212:-85.906,0,-118.291	0/1:303:153,150:153:5476:150:5345:-389.972,0,-401.755	0/1:14:8,6:8:284:6:212:-15.2104,0,-21.6889	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:82:0,82:0:0:82:2916:-262.677,-24.6845,0	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	0/1:90:47,43:47:1688:43:1526:-110.539,0,-125.114	1/1:56:0,56:0:0:56:1953:-176.043,-16.8577,0	0/1:24:6,18:6:216:18:640:-50.7046,0,-12.5658	0/1:22:7,15:7:252:15:527:-41.1375,0,-16.4063	0/1:67:25,42:25:881:42:1499:-115.035,0,-59.4369	1/1:131:0,131:0:0:131:4614:-415.427,-39.4349,0	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	1/1:290:0,290:0:0:290:10318:-928.55,-87.2987,0	1/1:120:0,120:0:0:120:4267:-384.209,-36.1236,0	1/1:73:0,73:0:0:73:2579:-232.357,-21.9752,0	1/1:62:0,62:0:0:62:2192:-197.543,-18.6639,0	1/1:27:0,27:0:0:27:935:-84.4594,-8.12781,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	1/1:65:0,65:0:0:65:2319:-208.97,-19.567,0	1/1:122:0,122:0:0:122:4299:-387.09,-36.7257,0	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	1/1:88:0,88:0:0:88:3094:-278.685,-26.4906,0	0/1:94:54,40:54:1944:40:1409:-98.8094,0,-146.939	0/1:129:65,64:65:2332:64:2245:-163.477,0,-171.307	1/1:95:0,95:0:0:95:3338:-300.636,-28.5979,0	1/1:33:0,33:0:0:33:1164:-105.065,-9.93399,0	1/1:86:1,85:1:36:85:3021:-268.522,-22.2903,0	0/1:19:4,15:4:144:15:536:-42.8552,0,-7.59405	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	1/1:51:0,51:0:0:51:1805:-162.729,-15.3525,0	1/1:187:0,187:0:0:187:6649:-598.491,-56.2926,0	1/1:90:0,90:0:0:90:3150:-283.724,-27.0927,0	1/1:71:0,71:0:0:71:2527:-227.682,-21.3731,0	0/1:96:52,44:52:1864:44:1558:-111.611,0,-139.141	1/1:117:2,115:2:72:115:4040:-356.952,-28.3838,0	0/1:35:17,18:17:612:18:629:-46.3988,0,-44.8774	1/1:64:0,64:0:0:64:2265:-204.111,-19.2659,0	1/1:89:0,89:0:0:89:3128:-281.747,-26.7917,0	1/1:116:0,116:0:0:116:4113:-370.346,-34.9195,0	0/1:146:81,65:81:2880:65:2282:-161.69,0,-215.485	0/1:80:49,31:49:1756:31:1107:-75.8578,0,-134.242	1/1:63:1,62:1:36:62:2215:-196.016,-15.3666,0	1/1:116:0,116:0:0:116:4070:-366.491,-34.9195,0
chr06	4170434	.	C	T	61236.2	PASS	AB=0.500199;ABP=3.01203;AC=45;AF=0.241935;AN=186;AO=2555;CIGAR=1X;DP=12024;DPB=12024;DPRA=1.04668;EPP=671.678;EPPR=1109.73;GTI=3;LEN=1;MEANALT=1.07018;MQM=59.9714;MQMR=59.987;NS=93;NUMALT=1;ODDS=1.60971;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90887;QR=334171;RO=9462;RPL=363;RPP=2846.1;RPPR=10721.2;RPR=2192;RUN=1;SAF=1197;SAP=25.0403;SAR=1358;SRF=4947;SRP=45.8394;SRR=4515;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:37,37:37:1297:37:1307:-95.6545,0,-94.7529	0/0:102:102,0:102:3580:0:0:0,-30.7051,-322.408	0/1:236:119,117:119:4187:117:4183:-305.605,0,-305.973	0/0:255:255,0:255:8987:0:0:0,-76.7626,-808.822	0/1:89:45,44:45:1590:44:1580:-115.698,0,-116.597	0/1:70:36,34:36:1271:34:1224:-89.3949,0,-93.62	0/0:79:79,0:79:2774:0:0:0,-23.7814,-249.9	0/1:217:120,97:120:4263:97:3476:-247.728,0,-318.51	0/1:236:122,114:122:4319:114:4030:-291.841,0,-317.847	0/1:124:69,55:69:2472:55:1959:-139.257,0,-185.406	0/1:65:38,27:38:1343:27:956:-66.7888,0,-101.602	0/0:144:144,0:144:5004:0:0:0,-43.3483,-450.515	0/1:157:71,86:71:2510:86:3083:-230.435,0,-178.891	0/1:110:57,53:57:2006:53:1900:-138.165,0,-147.699	0/0:142:142,0:142:4984:0:0:0,-42.7463,-448.715	0/1:101:44,56:44:1546:56:1970:-147.109,0,-108.968	0/0:94:93,1:93:3314:1:32:0,-25.0975,-295.257	0/0:82:82,0:82:2875:0:0:0,-24.6845,-258.985	0/0:32:32,0:32:1105:0:0:0,-9.63296,-99.7542	0/0:124:124,0:124:4369:0:0:0,-37.3277,-393.387	0/1:244:122,122:122:4297:122:4330:-316.427,0,-313.458	0/0:65:64,1:64:2269:1:36:0,-15.9687,-200.873	0/1:226:115,111:115:4076:111:3943:-287.029,0,-298.998	0/1:82:40,42:40:1428:42:1496:-110.25,0,-104.133	0/1:101:60,41:60:2128:41:1452:-100.569,0,-161.385	0/0:352:351,1:351:12415:1:36:0,-102.364,-1113.59	0/0:218:218,0:218:7695:0:0:0,-65.6245,-692.594	0/0:73:73,0:73:2598:0:0:0,-21.9752,-234.068	0/1:326:118,208:118:4159:208:7404:-568.175,0,-276.361	0/1:161:92,69:92:3259:69:2464:-173.549,0,-245.064	0/0:141:137,3:137:4886:3:108:0,-32.4289,-429.818	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:7:7,0:7:235:0:0:0,-2.10721,-21.4779	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:292:141,151:141:4967:151:5345:-393.284,0,-359.281	0/0:86:86,0:86:3020:0:0:0,-25.8886,-272.032	0/0:51:51,0:51:1812:0:0:0,-15.3525,-163.362	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:202:201,0:201:7111:0:0:0,-60.507,-639.697	0/0:29:28,1:28:978:1:36:0,-5.13159,-84.7329	0/1:215:120,95:120:4233:95:3377:-239.424,0,-316.43	0/1:115:53,62:53:1887:62:2193:-163.016,0,-135.489	0/1:97:60,37:60:2111:37:1315:-89.4511,0,-161.059	0/1:167:80,87:80:2835:87:3084:-227.515,0,-205.118	0/1:160:82,78:82:2899:78:2770:-201.376,0,-212.983	0/0:197:197,0:197:6960:0:0:0,-59.3029,-626.472	0/0:118:118,0:118:4193:0:0:0,-35.5215,-377.553	0/1:179:88,91:88:3120:91:3255:-239.286,0,-227.142	0/1:48:33,15:33:1155:15:531:-33.6725,0,-89.8061	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:170:170,0:170:6006:0:0:0,-51.1751,-540.654	0/0:74:74,0:74:2619:0:0:0,-22.2762,-235.959	.:.:.:.:.:.:.:.	0/1:190:106,84:106:3705:84:2968:-210.158,0,-276.46	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.354	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:122:63,59:63:2233:59:2108:-153.264,0,-164.507	0/0:143:140,3:140:4985:3:108:0,-32.9721,-438.721	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:271:271,0:271:9545:0:0:0,-81.5791,-859.025	0/0:290:286,4:286:10187:4:136:0,-74.7232,-904.188	0/0:86:85,1:85:3009:1:36:0,-22.2903,-267.443	0/0:120:120,0:120:4210:0:0:0,-36.1236,-379.085	0/0:286:283,2:283:10059:2:72:0,-79.3167,-898.416	0/0:202:200,2:200:7059:2:72:0,-53.9713,-628.542	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:92:91,1:91:3247:1:36:0,-24.0965,-288.853	0/0:58:58,0:58:2017:0:0:0,-17.4597,-181.802	0/1:12:9,3:9:320:3:104:-6.09045,0,-25.53	0/0:108:108,0:108:3788:0:0:0,-32.5112,-341.123	0/1:124:56,68:56:1983:68:2440:-182.527,0,-141.416	0/1:310:150,160:150:5286:160:5695:-419.351,0,-382.562	0/0:199:198,0:198:7003:0:0:0,-59.6039,-629.979	0/0:164:164,0:164:5798:0:0:0,-49.3689,-521.928	0/0:155:152,3:152:5419:3:108:0,-36.5845,-477.767	0/0:9:9,0:9:308:0:0:0,-2.70927,-28.0519	0/0:134:134,0:134:4773:0:0:0,-40.338,-429.728	0/0:173:173,0:173:6110:0:0:0,-52.0782,-550.008	0/0:328:327,0:327:11540:0:0:0,-98.4368,-1038.12	0/0:109:109,0:109:3874:0:0:0,-32.8123,-348.856	0/0:138:137,1:137:4830:1:36:0,-37.9439,-431.256	0/1:97:49,48:49:1734:48:1692:-123.364,0,-127.143	0/0:181:181,0:181:6391:0:0:0,-54.4864,-575.287	0/1:38:13,25:13:455:25:896:-69.5212,0,-29.8428	0/0:114:112,1:112:3902:1:36:0,-30.7779,-347.78	0/0:143:143,0:143:4999:0:0:0,-43.0473,-450.06	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/1:100:48,52:48:1684:52:1831:-134.967,0,-121.741	0/1:118:41,77:41:1459:77:2742:-211.5,0,-96.0837	0/0:269:268,1:268:9375:1:36:0,-77.3788,-840.082	0/0:195:195,0:195:6853:0:0:0,-58.7008,-616.835
chr06	4170443	.	ACCA	CCCG,ACCG	324762	PASS	AB=0.506746,0.486905;ABP=5.00254,10.5174;AC=141,47;AF=0.75,0.25;AN=188;AO=9638,2492;CIGAR=1X2M1X,3M1X;DP=12200;DPB=12202;DPRA=38.6857,1.02695;EPP=20923,5414.32;EPPR=7.35324;GTI=5;LEN=4,1;MEANALT=2.27778,2.61017;MQM=59.9905,59.9888;MQMR=60;NS=94;NUMALT=2;ODDS=1.23557;PAIRED=0,0;PAIREDR=0;PAO=5.5,1.5;PQA=183.5,47.5;PQR=0;PRO=0;QA=332691,87339;QR=67;RO=2;RPL=4979,1164;RPP=26.0813,26.4469;RPPR=7.35324;RPR=4659,1328;RUN=1,1;SAF=4980,1164;SAP=26.3706,26.4469;SAR=4658,1328;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:72:0,36,36:0:0:36,36:1241,1261:-203.758,-102.953,-92.1162,-101.152,0,-90.3152	1/1:104:0,104,0:0:0:104,0:3597,0:-323.943,-31.3071,0,-323.943,-31.3071,-323.943	1/2:238:0,121,117:0:0:121,117:4183,4159:-679.161,-339.273,-302.849,-340.238,0,-305.018	1/1:261:0,259,0:0:0:259,0:8924,0:-802.89,-77.9668,0,-802.89,-77.9668,-802.89	1/2:86:0,45,41:0:0:45,41:1585,1445:-247.042,-118.001,-104.454,-129.394,0,-117.052	1/2:72:0,37,35:0:0:37,35:1262,1227:-202.589,-100.197,-89.0589,-102.738,0,-92.2018	1/1:82:0,81,0:0:0:81,0:2770,0:-249.183,-24.3834,0,-249.183,-24.3834,-249.183	1/2:217:0,122,94:0:0:122,94:4208,3274:-608.06,-266.224,-229.498,-341.824,0,-313.527	1/2:238:0,124,109:0:0:124,109:4292,3826:-660.204,-311.412,-274.085,-348.825,0,-316.013	1/2:123:0,69,53:0:0:69,53:2408,1875:-348.569,-152.714,-131.943,-195.846,0,-179.892	1/2:64:0,36,27:0:0:36,27:1257,955:-180.02,-77.7774,-66.9404,-102.235,0,-94.107	1/1:150:0,149,0:0:0:149,0:5022,0:-451.789,-44.8535,0,-451.789,-44.8535,-451.789	1/2:161:0,76,84:0:0:76,84:2543,2956:-446.546,-240.648,-217.77,-205.901,0,-180.615	1/2:114:0,59,55:0:0:59,55:1994,1863:-313.021,-151.388,-133.627,-161.971,0,-145.414	1/1:140:0,139,0:0:0:139,0:4752,0:-427.651,-41.8432,0,-427.651,-41.8432,-427.651	1/2:103:0,45,58:0:0:45,58:1551,2000:-288.739,-162.751,-149.205,-126.274,0,-108.815	1/1:95:0,91,1:0:0:91,1:3144,36:-282.894,-27.3937,0,-279.956,-24.4347,-279.655	1/1:83:0,83,0:0:0:83,0:2805,0:-252.69,-24.9855,0,-252.69,-24.9855,-252.69	1/1:32:0,32,0:0:0:32,0:1088,0:-98.1643,-9.63296,0,-98.1643,-9.63296,-98.1643	1/1:131:0,130,0:0:0:130,0:4493,0:-404.191,-39.1339,0,-404.191,-39.1339,-404.191	1/2:245:0,126,114:0:0:126,114:4333,3975:-675.178,-323.296,-285.367,-351.9,0,-317.583	1/1:65:0,64,1:0:0:64,1:2174,36:-195.564,-19.2659,0,-192.626,-15.9687,-192.325	1/2:225:0,114,111:0:0:114,111:3973,3896:-640.521,-317.422,-283.105,-323.448,0,-290.034	1/2:82:0,40,41:0:0:40,41:1396,1455:-232.193,-118.651,-106.609,-113.641,0,-101.299	1/2:102:0,64,38:0:0:64,38:2205,1344:-288.918,-109.821,-90.5551,-179.447,0,-168.008	1/1:360:0,356,1:0:0:356,1:12340,32:-1110.18,-107.167,0,-1107.6,-104.582,-1107.3	1/1:230:0,229,0:0:0:229,0:7886,0:-709.495,-68.9359,0,-709.495,-68.9359,-709.495	1/1:76:0,76,0:0:0:76,0:2611,0:-235.24,-22.8783,0,-235.24,-22.8783,-235.24	1/2:320:1,121,197:1:33:121,197:4240,6843:-898.401,-553.69,-519.934,-342.405,0,-285.77	1/2:162:0,93,68:0:0:93,68:3233,2367:-455.386,-192.534,-164.538,-262.918,0,-242.448	1/1:145:0,143,2:0:0:143,2:4995,72:-449.346,-43.0473,0,-443.471,-36.8126,-442.869	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:7:0,7,0:0:0:7,0:237,0:-21.66,-2.10721,0,-21.66,-2.10721,-21.66	1/2:5:0,1,4:0:0:1,4:36,135:-14.2203,-11.2784,-10.9774,-3.29724,0,-2.09312	2/2:5:0,0,5:0:0:0,5:0,171:-15.7255,-15.7255,-15.7255,-1.50515,-1.50515,0	1/2:11:0,9,2:0:0:9,2:318,68:-31.765,-5.85565,-3.14638,-26.2516,0,-25.6495	1/2:290:0,138,150:0:0:138,150:4772,5182:-808.91,-421.144,-379.602,-387.879,0,-342.724	1/1:89:0,88,0:0:0:88,0:3027,0:-272.352,-26.4906,0,-272.352,-26.4906,-272.352	1/1:54:0,54,0:0:0:54,0:1874,0:-168.937,-16.2556,0,-168.937,-16.2556,-168.937	1/1:6:0,6,0:0:0:6,0:213,0:-19.5164,-1.80618,0,-19.5164,-1.80618,-19.5164	1/1:205:0,204,0:0:0:204,0:7121,0:-640.607,-61.4101,0,-640.607,-61.4101,-640.607	1/1:29:0,29,0:0:0:29,0:993,0:-89.6762,-8.72987,0,-89.6762,-8.72987,-89.6762	1/2:219:0,123,94:0:0:123,94:4246,3329:-616.182,-271.229,-234.203,-345.001,0,-316.705	1/2:116:0,56,59:0:0:56,59:1871,2083:-321.081,-169.62,-152.762,-151.445,0,-133.684	1/2:94:0,58,36:0:0:58,36:2022,1266:-267.848,-103.404,-85.9443,-164.794,0,-153.957	1/2:169:0,82,86:0:0:82,86:2833,3022:-476.139,-245.963,-221.279,-230.165,0,-204.276	1/2:160:0,88,72:0:0:88,72:3081,2527:-456.687,-206.007,-179.516,-251.031,0,-229.357	1/1:205:0,204,1:0:0:204,1:7058,22:-635.085,-61.4101,0,-633.407,-59.5112,-633.106	1/1:116:0,114,0:0:0:114,0:3976,0:-357.686,-34.3174,0,-357.686,-34.3174,-357.686	1/2:178:0,88,89:0:0:88,89:3102,3159:-509.947,-257.382,-230.892,-252.559,0,-225.767	1/2:48:0,33,15:0:0:33,15:1140,528:-135.955,-43.3359,-33.4019,-92.9688,0,-88.4533	1/2:3:0,2,1:0:0:2,1:72,36:-8.81225,-2.93742,-2.33536,-5.87483,0,-5.5738	1/1:171:0,170,0:0:0:170,0:5952,0:-535.529,-51.1751,0,-535.529,-51.1751,-535.529	1/1:79:0,78,1:0:0:78,1:2674,32:-240.587,-23.4803,0,-238.009,-20.5821,-237.708	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:194:0,107,85:0:0:107,85:3650,2998:-540.263,-2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chr06	4178190	.	G	A	160939	PASS	AB=0.460508;ABP=62.6957;AC=142;AF=0.763441;AN=186;AO=7508;CIGAR=1X;DP=9914;DPB=9914;DPRA=21.767;EPP=16167.7;EPPR=5156.04;GTI=0;LEN=1;MEANALT=1.0989;MQM=59.9868;MQMR=59.9908;NS=93;NUMALT=1;ODDS=1.93154;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268907;QR=85452;RO=2397;RPL=16;RPP=16167.7;RPPR=5156.04;RPR=7492;RUN=1;SAF=7508;SAP=16306.4;SAR=0;SRF=2397;SRP=5208.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:101:56,45:56:1996:45:1616:-115.326,0,-149.51	1/1:105:0,105:0:0:105:3768:-339.318,-31.6082,0	0/1:239:135,103:135:4828:103:3683:-259.668,0,-362.67	1/1:176:0,176:0:0:176:6317:-568.619,-52.9813,0	0/1:67:39,28:39:1400:28:1004:-70.5069,0,-106.13	0/1:36:18,18:18:644:18:632:-46.3691,0,-47.4535	1/1:97:0,97:0:0:97:3483:-313.68,-29.1999,0	0/1:171:93,78:93:3324:78:2800:-200.762,0,-247.902	0/1:143:66,77:66:2341:77:2768:-206.313,0,-167.901	0/1:125:63,62:63:2248:62:2209:-161.444,0,-164.955	0/1:62:28,33:28:1004:33:1188:-88.5059,0,-71.9533	1/1:116:0,116:0:0:116:4176:-376.011,-34.9195,0	0/1:80:37,43:37:1304:43:1536:-114.45,0,-93.5762	0/1:43:22,21:22:784:21:752:-55.062,0,-57.9396	1/1:94:0,94:0:0:94:3361:-302.705,-28.2968,0	0/1:70:34,36:34:1220:36:1288:-95.1515,0,-89.0347	1/1:33:2,31:2:72:31:1116:-93.915,-3.09727,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:189:0,189:0:0:189:6729:-605.684,-56.8947,0	0/1:272:148,123:148:5247:123:4402:-314.412,0,-390.429	1/1:114:0,114:0:0:114:4088:-368.105,-34.3174,0	0/1:138:84,54:84:3005:54:1929:-132.343,0,-229.137	0/1:144:66,78:66:2372:78:2800:-208.891,0,-170.389	0/1:120:71,49:71:2536:49:1760:-122.56,0,-192.368	1/1:259:1,258:1:36:258:9242:-828.145,-74.3685,0	1/1:272:1,271:1:36:271:9654:-865.157,-78.2819,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:298:188,110:188:6705:110:3948:-265.767,0,-513.818	0/1:150:108,41:108:3856:41:1472:-87.5629,0,-302.023	1/1:102:0,102:0:0:102:3664:-329.963,-30.7051,0	0/1:6:2,3:2:68:3:108:-8.21019,0,-4.59938	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:188:94,94:94:3364:94:3372:-247.102,0,-246.383	1/1:158:0,158:0:0:158:5653:-508.889,-47.5627,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:79:0,79:0:0:79:2844:-256.197,-23.7814,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:182:102,80:102:3633:80:2861:-202.938,0,-272.387	0/1:62:32,30:32:1144:30:1072:-78.1286,0,-84.6057	0/1:78:35,43:35:1235:43:1548:-116.133,0,-87.9731	0/1:163:94,69:94:3368:69:2467:-173.216,0,-254.268	0/1:158:78,80:78:2783:80:2872:-211.154,0,-203.148	1/1:174:0,174:0:0:174:6229:-560.703,-52.3792,0	1/1:134:0,134:0:0:134:4789:-431.119,-40.338,0	0/1:207:72,135:72:2549:135:4850:-374.338,0,-167.344	0/1:180:88,92:88:3120:92:3293:-242.403,0,-226.84	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:136:0,136:0:0:136:4876:-438.992,-40.9401,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:188:116,72:116:4148:72:2569:-174.866,0,-316.853	1/1:67:3,64:3:108:64:2287:-196.017,-10.0938,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:125:75,49:75:2644:49:1756:-120.636,0,-200.519	1/1:90:0,90:0:0:90:3228:-290.741,-27.0927,0	.:.:.:.:.:.:.:.	1/1:117:0,117:0:0:117:4200:-378.18,-35.2205,0	1/1:234:0,234:0:0:234:8380:-754.201,-70.441,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:188:1,187:1:36:187:6657:-595.607,-52.9954,0	1/1:154:5,149:5:180:149:5344:-464.535,-29.8066,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:94:0,94:0:0:94:3375:-303.965,-28.2968,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	1/1:199:0,199:0:0:199:7112:-640.136,-59.905,0	0/1:110:56,54:56:1987:54:1918:-139.778,0,-145.99	0/1:207:109,98:109:3885:98:3520:-254.696,0,-287.531	1/1:191:0,191:0:0:191:6849:-616.476,-57.4967,0	1/1:120:1,119:1:36:119:4280:-381.777,-32.5253,0	1/1:74:0,74:0:0:74:2650:-238.746,-22.2762,0	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	1/1:117:3,113:3:108:113:4056:-355.151,-25.2041,0	1/1:162:0,162:0:0:162:5802:-522.294,-48.7669,0	1/1:264:0,264:0:0:264:9452:-850.64,-79.4719,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:53:27,26:27:955:26:927:-67.7928,0,-70.3103	1/1:120:0,119:0:0:119:4267:-383.848,-35.8226,0	0/1:33:16,17:16:572:17:612:-45.4794,0,-41.8794	1/1:69:0,69:0:0:69:2484:-223.813,-20.7711,0	1/1:82:0,82:0:0:82:2939:-264.743,-24.6845,0	1/1:43:0,43:0:0:43:1524:-137.453,-12.9443,0	0/1:88:40,47:40:1423:47:1680:-124.938,0,-101.817	0/1:64:51,13:51:1820:13:468:-23.1937,0,-144.815	1/1:181:0,181:0:0:181:6479:-583.194,-54.4864,0	1/1:129:0,129:0:0:129:4609:-414.973,-38.8329,0
chr06	4215199	.	C	T	4022.69	PASS	AB=0.397899;ABP=218.512;AC=38;AF=0.204301;AN=186;AO=956;CIGAR=1X;DP=7359;DPB=7359;DPRA=0.762123;EPP=2078.94;EPPR=13900.4;GTI=11;LEN=1;MEANALT=1.02174;MQM=24.4843;MQMR=25.6681;NS=93;NUMALT=1;ODDS=1.08216;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33978;QR=224423;RO=6400;RPL=956;RPP=2078.94;RPPR=13900.4;RPR=0;RUN=1;SAF=956;SAP=2078.94;SAR=0;SRF=6400;SRP=13900.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:4,4:4:144:4:140:-6.50311,0,-7.93566	0/0:80:80,0:80:2786:0:0:0,-24.0824,-182.162	0/1:85:49,36:49:1707:36:1268:-55.3929,0,-87.3328	0/0:136:136,0:136:4800:0:0:0,-40.9401,-304.981	0/1:40:29,11:29:1031:11:396:-11.3448,0,-51.0367	0/1:95:57,38:57:2035:38:1364:-57.8466,0,-104.593	0/0:119:119,0:119:4207:0:0:0,-35.8226,-263.376	0/1:117:68,49:68:2419:49:1716:-74.0257,0,-121.079	0/1:60:37,23:37:1261:23:809:-32.1617,0,-68.2166	0/1:73:38,35:38:1328:35:1248:-51.929,0,-63.9769	0/1:40:26,14:26:887:14:500:-17.4761,0,-45.1336	0/0:51:51,0:51:1764:0:0:0,-15.3525,-116.437	0/1:50:26,24:26:923:24:847:-39.2581,0,-44.5761	0/1:62:35,27:35:1224:27:953:-38.8943,0,-59.5514	0/0:61:61,0:61:2171:0:0:0,-18.3628,-135.679	0/1:33:16,17:16:564:17:612:-26.2703,0,-25.7013	0/0:68:68,0:68:2394:0:0:0,-20.47,-156.643	0/0:50:50,0:50:1769:0:0:0,-15.0515,-114.084	0/0:31:31,0:31:1086:0:0:0,-9.33193,-71.8462	0/0:126:125,0:125:4407:0:0:0,-37.6287,-278.251	0/1:98:66,32:66:2328:32:1136:-39.1891,0,-116.748	0/0:167:167,0:167:5880:0:0:0,-50.272,-371.387	0/1:28:14,14:14:504:14:504:-21.715,0,-23.9272	0/1:5:3,2:3:108:2:72:-3.00456,0,-5.40219	0/1:24:16,8:16:572:8:280:-10.0342,0,-28.0712	0/0:319:319,0:319:11264:0:0:0,-96.0286,-708.251	0/0:168:168,0:168:5910:0:0:0,-50.573,-370.975	0/0:32:32,0:32:1126:0:0:0,-9.63296,-71.935	0/1:175:95,80:95:3330:80:2864:-118.058,0,-156.33	0/1:88:49,39:49:1690:39:1383:-57.2216,0,-80.6962	0/0:119:119,0:119:4219:0:0:0,-35.8226,-265.049	0/1:4:2,2:2:72:2:72:-3.30559,0,-3.483	0/0:16:16,0:16:556:0:0:0,-4.81648,-35.7112	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.55871	0/1:6:3,3:3:99:3:99:-5.10384,0,-5.16021	0/0:7:7,0:7:248:0:0:0,-2.10721,-16.3247	0/1:149:89,60:89:3109:60:2101:-82.0259,0,-150.477	0/0:225:225,0:225:7882:0:0:0,-67.7317,-496.893	0/0:52:52,0:52:1848:0:0:0,-15.6536,-119.356	.:.:.:.:.:.:.:.	0/0:112:112,0:112:3920:0:0:0,-33.7154,-247.856	0/0:19:19,0:19:653:0:0:0,-5.71957,-41.458	0/1:61:42,19:42:1470:19:684:-22.6309,0,-74.3762	0/1:42:17,25:17:599:25:892:-40.7592,0,-25.1437	0/1:50:36,14:36:1267:14:504:-14.6504,0,-64.0686	0/1:45:30,15:30:1063:15:536:-18.3516,0,-52.9784	0/1:133:81,52:81:2836:52:1864:-75.2354,0,-145.36	0/0:199:198,1:198:6895:1:36:0,-57.5314,-432.782	0/0:98:98,0:98:3424:0:0:0,-29.5009,-216.048	0/1:108:71,37:71:2472:37:1332:-46.3324,0,-123.955	0/1:96:66,30:66:2305:30:1068:-34.976,0,-116.383	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.0877	0/0:116:114,2:114:3939:2:72:0,-30.2324,-254.545	0/0:36:36,0:36:1273:0:0:0,-10.8371,-79.3773	0/0:10:9,1:9:315:1:36:0,-0.543394,-17.5402	0/1:76:44,32:44:1515:32:1140:-47.2057,0,-73.4028	0/0:40:40,0:40:1410:0:0:0,-12.0412,-88.8932	0/0:3:3,0:3:108:0:0:0,-0.90309,-6.90734	0/1:17:12,5:12:423:5:180:-5.80073,0,-21.6093	0/1:46:34,12:34:1194:12:432:-11.7623,0,-62.4615	0/0:115:115,0:115:4014:0:0:0,-34.6184,-254.306	0/1:6:2,4:2:72:4:144:-6.97588,0,-2.88094	0/0:200:199,0:199:6996:0:0:0,-59.905,-441.735	0/0:161:160,1:160:5555:1:36:0,-46.0923,-356.563	0/0:69:68,1:68:2368:1:36:0,-18.3975,-147.514	0/0:100:100,0:100:3474:0:0:0,-30.103,-222	0/0:134:134,0:134:4751:0:0:0,-40.338,-297.293	0/0:91:91,0:91:3200:0:0:0,-27.3937,-200.585	0/0:5:5,0:5:165:0:0:0,-1.50515,-10.8772	0/0:50:50,0:50:1760:0:0:0,-15.0515,-113.924	0/0:71:71,0:71:2467:0:0:0,-21.3731,-156.161	0/0:12:11,1:11:383:1:36:0,-1.23883,-22.0914	0/0:90:90,0:90:3138:0:0:0,-27.0927,-207.188	0/1:76:57,18:57:2021:18:636:-17.2669,0,-108.185	0/1:165:109,56:109:3800:56:1982:-71.5448,0,-191.818	0/0:142:142,0:142:5007:0:0:0,-42.7463,-313.029	0/0:221:221,0:221:7718:0:0:0,-66.5276,-507.691	0/0:103:102,1:102:3574:1:36:0,-28.5392,-230.059	0/1:15:8,7:8:273:7:248:-10.7979,0,-13.6364	0/0:91:91,0:91:3197:0:0:0,-27.3937,-200.07	0/0:112:112,0:112:3925:0:0:0,-33.7154,-255.367	0/0:164:164,0:164:5766:0:0:0,-49.3689,-364.734	0/0:100:100,0:100:3502:0:0:0,-30.103,-223.267	0/0:49:49,0:49:1718:0:0:0,-14.7505,-109.339	0/1:78:37,41:37:1285:41:1455:-64.1766,0,-60.0916	0/0:113:113,0:113:3928:0:0:0,-34.0164,-250.882	0/1:35:20,15:20:716:15:523:-22.5079,0,-35.3909	0/0:54:54,0:54:1876:0:0:0,-16.2556,-123.141	0/0:54:54,0:54:1900:0:0:0,-16.2556,-123.716	0/0:30:30,0:30:1020:0:0:0,-9.0309,-65.7255	0/1:47:25,22:25:888:22:779:-32.653,0,-41.7126	0/1:44:19,25:19:680:25:891:-40.2614,0,-28.7998	0/0:94:93,1:93:3273:1:36:0,-25.9233,-204.107	0/0:89:89,0:89:3100:0:0:0,-26.7917,-196.647
chr06	4232263	.	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chr06	4311601	.	G	T	33730.8	PASS	AB=0.494008;ABP=4.31152;AC=44;AF=0.236559;AN=186;AO=2076;CIGAR=1X;DP=11508;DPB=11508;DPRA=0.880314;EPP=4510.99;EPPR=20438.7;GTI=5;LEN=1;MEANALT=1.03774;MQM=59.9952;MQMR=59.9994;NS=93;NUMALT=1;ODDS=1.25658;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73398;QR=333534;RO=9419;RPL=2076;RPP=4510.99;RPPR=20438.7;RPR=0;RUN=1;SAF=2076;SAP=4510.99;SAR=0;SRF=9419;SRP=20456.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:26,19:26:910:19:671:-47.1694,0,-68.6677	0/0:196:196,0:196:6990:0:0:0,-59.0019,-629.166	0/1:133:69,63:69:2441:63:2223:-160.383,0,-179.997	0/0:322:322,0:322:11411:0:0:0,-96.9317,-1026.88	0/1:77:46,31:46:1639:31:1103:-76.4005,0,-124.619	0/1:50:26,24:26:911:24:852:-61.9489,0,-67.2535	0/0:143:143,0:143:5061:0:0:0,-43.0473,-455.64	0/1:238:120,118:120:4260:118:4129:-300.154,0,-311.935	0/1:63:30,33:30:1068:33:1180:-87.5426,0,-77.4672	0/1:119:60,59:60:2127:59:2120:-155.246,0,-155.876	0/1:54:23,31:23:824:31:1077:-80.979,0,-58.2277	0/0:81:81,0:81:2854:0:0:0,-24.3834,-257.097	0/1:94:50,44:50:1758:44:1525:-109.24,0,-130.205	0/1:81:34,47:34:1208:47:1679:-127.013,0,-84.6427	0/0:104:104,0:104:3632:0:0:0,-31.3071,-327.086	0/1:63:28,35:28:987:35:1243:-93.209,0,-70.1781	0/0:87:87,0:87:3075:0:0:0,-26.1896,-276.978	0/0:73:72,1:72:2558:1:32:0,-18.7759,-227.27	0/0:64:64,0:64:2240:0:0:0,-19.2659,-201.862	0/0:303:302,1:302:10710:1:36:0,-87.6138,-960.218	0/1:151:74,77:74:2619:77:2694:-197.246,0,-190.5	0/0:162:159,0:159:5649:0:0:0,-47.8638,-508.171	0/1:106:49,57:49:1739:57:2021:-150.252,0,-124.885	0/1:115:56,59:56:1982:59:2093:-154.021,0,-144.035	0/1:87:47,40:47:1684:40:1423:-102.177,0,-125.657	0/0:424:424,0:424:15010:0:0:0,-127.637,-1350.65	0/0:188:187,1:187:6664:1:36:0,-52.9954,-596.24	0/0:49:49,0:49:1721:0:0:0,-14.7505,-155.173	0/1:282:160,122:160:5673:122:4328:-304.804,0,-425.801	0/1:168:96,72:96:3427:72:2528:-177.196,0,-258.071	0/0:190:188,2:188:6685:2:72:0,-50.359,-594.894	0/1:9:8,1:8:284:1:32:-0.490043,0,-23.1941	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:310:152,158:152:5345:158:5617:-412.335,0,-387.868	0/0:216:216,0:216:7664:0:0:0,-65.0225,-689.8	0/0:67:67,0:67:2368:0:0:0,-20.169,-213.377	.:.:.:.:.:.:.:.	0/0:257:255,0:255:8984:0:0:0,-76.7626,-808.193	0/0:35:35,0:35:1216:0:0:0,-10.536,-109.74	0/1:142:74,68:74:2596:68:2420:-175.31,0,-191.14	0/1:125:60,65:60:2080:65:2300:-169.631,0,-149.838	0/1:113:48,65:48:1700:65:2312:-174.325,0,-119.267	0/1:70:42,28:42:1481:28:987:-68.0709,0,-112.51	0/1:189:105,84:105:3738:84:2990:-212.437,0,-279.726	0/0:292:290,1:290:10305:1:36:0,-84.3613,-923.783	0/0:148:147,0:147:5222:0:0:0,-44.2514,-469.759	0/1:147:66,81:66:2347:81:2886:-215.724,0,-167.238	0/1:179:114,65:114:4043:65:2306:-153.916,0,-310.174	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:149:149,0:149:5306:0:0:0,-44.8535,-477.677	0/0:68:66,0:66:2338:0:0:0,-19.868,-210.339	0/1:11:3,8:3:104:8:280:-22.228,0,-6.39148	0/1:170:108,62:108:3779:62:2160:-143.488,0,-289.133	0/0:59:58,1:58:2030:1:36:0,-14.1625,-179.371	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:22:7,15:7:252:15:540:-42.3139,0,-16.4063	0/1:61:31,30:31:1090:30:1068:-78.0692,0,-80.0451	0/0:131:131,0:131:4618:0:0:0,-39.4349,-415.785	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:382:382,0:382:13549:0:0:0,-114.993,-1219.21	0/0:252:251,1:251:8918:1:36:0,-72.2613,-799.008	0/0:81:81,0:81:2861:0:0:0,-24.3834,-257.725	0/0:137:134,0:134:4751:0:0:0,-40.338,-427.393	0/0:219:215,4:215:7598:4:135:0,-53.4431,-671.383	0/0:136:136,0:136:4822:0:0:0,-40.9401,-434.136	0/0:20:20,0:20:696:0:0:0,-6.0206,-62.9597	0/0:91:91,0:91:3239:0:0:0,-27.3937,-291.732	0/0:80:80,0:80:2824:0:0:0,-24.0824,-254.399	0/1:31:12,19:12:423:19:675:-51.745,0,-29.0731	0/0:132:132,0:132:4664:0:0:0,-39.736,-419.923	0/1:106:52,54:52:1853:54:1899:-139.276,0,-135.139	0/1:136:61,75:61:2184:75:2654:-198.165,0,-155.886	0/0:245:245,0:245:8698:0:0:0,-73.7523,-782.816	0/0:134:134,0:134:4764:0:0:0,-40.338,-428.919	0/0:151:150,1:150:5294:1:36:0,-41.8573,-473.002	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:150:150,0:150:5331:0:0:0,-45.1545,-479.925	0/0:136:136,0:136:4808:0:0:0,-40.9401,-432.88	0/0:296:295,1:295:10457:1:36:0,-85.5066,-937.458	0/0:144:144,0:144:5081:0:0:0,-43.3483,-457.441	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.271	0/1:143:57,86:57:2015:86:2999:-227.093,0,-138.575	0/0:204:204,0:204:7171:0:0:0,-61.4101,-645.453	0/1:43:18,25:18:640:25:878:-66.3916,0,-44.985	0/0:101:101,0:101:3557:0:0:0,-30.404,-320.339	0/0:106:106,0:106:3737:0:0:0,-31.9092,-336.534	0/0:30:30,0:30:1046:0:0:0,-9.0309,-94.4484	0/1:90:37,53:37:1311:53:1881:-142.474,0,-91.1982	0/1:110:43,67:43:1532:67:2342:-177.922,0,-105.06	0/0:112:112,0:112:3999:0:0:0,-33.7154,-360.1	0/0:132:132,0:132:4665:0:0:0,-39.736,-420.016
chr06	4311663	.	A	C	30433.5	PASS	AB=0.511687;ABP=7.22299;AC=44;AF=0.234043;AN=188;AO=1825;CIGAR=1X;DP=9117;DPB=9117;DPRA=0.79001;EPP=3965.95;EPPR=15830.9;GTI=1;LEN=1;MEANALT=1.02041;MQM=59.9408;MQMR=59.9905;NS=94;NUMALT=1;ODDS=4.27176;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64955;QR=261177;RO=7289;RPL=1825;RPP=3965.95;RPPR=15830.9;RPR=0;RUN=1;SAF=0;SAP=3965.95;SAR=1825;SRF=0;SRP=15830.9;SRR=7289;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:24,22:24:860:22:764:-55.2281,0,-63.8745	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/1:169:93,76:93:3325:76:2689:-191.381,0,-248.365	0/0:254:253,0:253:9072:0:0:0,-76.1606,-816.243	0/1:64:14,50:14:500:50:1781:-141.305,0,-26.0703	0/1:26:17,9:17:608:9:309:-20.3148,0,-47.2252	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:80:38,42:38:1360:42:1478:-109.229,0,-98.6182	0/1:65:33,32:33:1184:32:1144:-83.4749,0,-87.3014	0/1:65:38,27:38:1368:27:957:-66.8769,0,-103.854	0/1:94:59,35:59:2120:35:1260:-85.4087,0,-162.772	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/1:115:63,52:63:2256:52:1851:-132.251,0,-168.684	0/1:89:62,27:62:2211:27:968:-60.6457,0,-172.463	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/1:69:35,34:35:1260:34:1201:-87.6226,0,-92.9344	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:236:233,3:233:8322:3:108:0,-60.9679,-738.911	0/1:103:52,51:52:1860:51:1807:-131.903,0,-136.674	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.725	0/1:152:65,87:65:2336:87:3090:-232.569,0,-164.743	0/1:56:25,31:25:892:31:1108:-83.1733,0,-63.742	0/1:68:32,36:32:1148:36:1279:-94.7137,0,-83.1598	0/0:189:189,0:189:6784:0:0:0,-56.8947,-610.63	0/0:238:238,0:238:8540:0:0:0,-71.6451,-768.596	0/0:34:33,1:33:1175:1:36:0,-6.63674,-102.459	0/1:287:137,150:137:4920:150:5342:-394.518,0,-356.553	0/1:90:35,55:35:1256:55:1980:-151.382,0,-86.2526	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.49	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.465	0/1:14:3,11:3:104:11:396:-31.7683,0,-5.48839	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:41:41,0:41:1441:0:0:0,-12.3422,-129.984	0/1:216:100,116:100:3588:116:4156:-309.2,0,-258.104	0/0:108:108,0:108:3849:0:0:0,-32.5112,-346.606	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:138:138,0:138:4956:0:0:0,-41.5421,-446.188	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:182:90,92:90:3217:92:3272:-239.911,0,-234.963	0/1:73:34,39:34:1224:39:1396:-103.964,0,-88.4919	0/1:70:31,39:31:1108:39:1383:-103.696,0,-78.9589	0/1:93:31,62:31:1112:62:2201:-170.358,0,-72.3956	0/1:156:62,94:62:2207:94:3331:-253.044,0,-151.934	0/0:221:220,0:220:7889:0:0:0,-66.2266,-709.736	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:71:45,26:45:1616:26:928:-62.4651,0,-124.357	0/1:129:72,57:72:2584:57:2036:-144.679,0,-193.976	0/1:15:4,11:4:144:11:381:-30.1051,0,-8.79817	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.518	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:227:92,134:92:3292:134:4774:-361.422,0,-227.617	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:19:4,15:4:144:15:532:-42.4935,0,-7.59405	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:82:48,34:48:1724:34:1183:-82.085,0,-130.761	0/0:145:145,0:145:5195:0:0:0,-43.6493,-467.688	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/0:169:169,0:169:6048:0:0:0,-50.8741,-544.424	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:176:174,2:174:6217:2:72:0,-46.3105,-552.955	0/0:155:155,0:155:5533:0:0:0,-46.6596,-498.095	0/0:91:91,0:91:3242:0:0:0,-27.3937,-292.001	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/0:117:117,0:117:4175:0:0:0,-35.2205,-375.933	0/1:67:36,31:36:1296:31:1078:-77.1562,0,-96.7749	0/1:117:77,40:77:2772:40:1436:-94.3172,0,-214.5	0/0:216:216,0:216:7752:0:0:0,-65.0225,-697.709	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.653	0/0:104:103,1:103:3704:1:36:0,-27.7088,-329.962	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/0:115:114,1:114:4088:1:36:0,-31.0202,-364.507	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.586	0/0:178:178,0:178:6373:0:0:0,-53.5833,-573.658	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:50:25,25:25:900:25:900:-66.2695,0,-66.2695	0/0:155:155,0:155:5550:0:0:0,-46.6596,-499.623	0/1:31:19,12:19:684:12:428:-29.5269,0,-52.5584	0/0:101:101,0:101:3627:0:0:0,-30.404,-326.547	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/1:131:75,56:75:2683:56:2008:-141.558,0,-202.279	0/1:103:36,67:36:1287:67:2404:-185.61,0,-85.1267	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.657	0/0:140:140,0:140:5011:0:0:0,-42.1442,-451.136
chr06	4358138	.	G	A	349804	PASS	AB=0.456909;ABP=272.869;AC=144;AF=0.765957;AN=188;AO=17465;CIGAR=1X;DP=26592;DPB=26592;DPRA=0;EPP=37927.8;EPPR=19815.5;GTI=8;LEN=1;MEANALT=1.03191;MQM=53.5908;MQMR=59.6917;NS=94;NUMALT=1;ODDS=1.01604;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=626026;QR=326078;RO=9124;RPL=0;RPP=37927.8;RPPR=19815.5;RPR=17465;RUN=1;SAF=17465;SAP=37927.8;SAR=0;SRF=9124;SRP=19815.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:91:53,38:53:1869:38:1368:-95.7168,0,-141.054	1/1:77:0,77:0:0:77:2756:-247.093,-23.1793,0	0/1:121:67,54:67:2383:54:1944:-138.189,0,-178.282	1/1:222:0,222:0:0:222:7958:-714.75,-66.8287,0	0/1:41:22,18:22:792:18:648:-46.1682,0,-59.2051	0/1:67:49,18:49:1764:18:648:-38.3354,0,-138.802	1/1:136:1,135:1:36:135:4819:-429.863,-37.3418,0	0/1:174:82,92:82:2918:92:3304:-243.124,0,-210.401	0/1:143:81,62:81:2888:62:2210:-155.223,0,-216.946	0/1:122:52,70:52:1856:70:2516:-189.803,0,-130.591	0/1:446:226,220:226:8064:220:7892:-574.79,0,-591.22	1/1:92:0,92:0:0:92:3289:-295.314,-27.6948,0	0/1:90:51,39:51:1823:39:1404:-99.2445,0,-137.241	0/1:78:48,30:48:1707:30:1072:-73.1794,0,-130.36	1/1:77:0,77:0:0:77:2760:-248.36,-23.1793,0	0/1:98:46,52:46:1644:52:1863:-137.92,0,-118.748	1/1:64:0,64:0:0:64:2273:-204.35,-19.2659,0	1/1:36:0,36:0:0:36:1292:-116.309,-10.8371,0	1/1:197:1,196:1:36:196:7028:-622.968,-55.7046,0	1/1:168:0,168:0:0:168:6017:-540.787,-50.573,0	0/1:212:112,100:112:3995:100:3575:-257.263,0,-295.908	1/1:122:0,122:0:0:122:4373:-393.081,-36.7257,0	0/1:218:109,109:109:3916:109:3905:-284.917,0,-286.998	0/1:72:25,47:25:896:47:1680:-129.392,0,-59.2754	0/1:115:69,46:69:2460:46:1652:-114.059,0,-187.036	1/1:202:0,202:0:0:202:7252:-652.156,-60.8081,0	1/1:286:0,286:0:0:286:10242:-919.596,-86.0946,0	1/1:21:0,21:0:0:21:756:-68.2667,-6.32163,0	0/1:249:141,108:141:5036:108:3865:-272.759,0,-378.423	0/1:189:101,88:101:3616:88:3152:-226.12,0,-268.733	1/1:137:1,136:1:36:136:4853:-432.436,-37.6428,0	0/1:1458:907,551:907:32417:551:19772:-1336.41,0,-2477.1	1/1:1330:6,1324:6:216:1324:47475:-4236.2,-380.579,0	0/1:1289:731,558:731:26098:558:19989:-1403.1,0,-1959.73	0/1:2135:1119,1015:1119:40019:1015:36411:-2618.42,0,-2954.93	1/1:1494:6,1488:6:212:1488:53309:-4753.68,-430.314,0	0/1:175:79,96:79:2823:96:3440:-256.974,0,-201.357	1/1:162:0,162:0:0:162:5799:-520.635,-48.7669,0	1/1:376:1,375:1:36:375:13430:-1199.91,-109.589,0	0/1:788:421,367:421:15028:367:13152:-943.149,0,-1114.89	1/1:91:0,91:0:0:91:3264:-293.138,-27.3937,0	1/1:226:1,225:1:36:225:8089:-722.817,-64.4345,0	0/1:192:96,96:96:3411:96:3444:-251.438,0,-249.173	0/1:46:21,25:21:756:25:900:-67.4026,0,-54.5151	0/1:58:28,30:28:996:30:1080:-79.8992,0,-72.4951	0/1:180:106,74:106:3788:74:2648:-183.834,0,-286.931	0/1:123:78,45:78:2792:45:1616:-108.159,0,-214.479	1/1:269:4,265:4:144:265:9500:-840.661,-67.6635,0	1/1:94:0,94:0:0:94:3376:-302.859,-28.2968,0	0/1:64:34,30:34:1220:30:1080:-78.177,0,-90.8399	0/1:144:88,56:88:3143:56:2012:-137.879,0,-239.745	0/1:676:405,271:405:14484:271:9697:-667.75,0,-1099.7	1/1:137:0,137:0:0:137:4924:-441.761,-41.2411,0	1/1:76:0,76:0:0:76:2720:-244.817,-22.8783,0	0/1:717:353,364:353:12640:364:13065:-955.976,0,-920.943	0/1:213:140,73:140:5016:73:2628:-172.144,0,-387.448	1/1:77:0,77:0:0:77:2753:-247.659,-23.1793,0	0/1:741:414,327:414:14785:327:11729:-831.302,0,-1107.22	0/1:524:325,199:325:11611:199:7140:-484.04,0,-886.923	0/1:121:71,50:71:2540:50:1792:-124.663,0,-192.413	1/1:86:2,84:2:72:84:3016:-264.291,-19.0519,0	0/1:721:392,329:392:14016:329:11785:-841.987,0,-1044.03	1/1:51:0,51:0:0:51:1829:-164.477,-15.3525,0	1/1:150:2,148:2:68:148:5306:-470.597,-38.6993,0	1/1:78:2,76:2:72:76:2717:-237.4,-16.6436,0	1/1:75:0,75:0:0:75:2696:-242.706,-22.5773,0	1/1:167:5,162:5:176:162:5796:-504.683,-34.0894,0	1/1:218:0,218:0:0:218:7803:-700.927,-65.6245,0	1/1:628:0,628:0:0:628:22536:-2021.27,-189.047,0	1/1:54:0,54:0:0:54:1925:-173.103,-16.2556,0	1/1:33:0,33:0:0:33:1173:-105.786,-9.93399,0	0/1:669:347,322:347:12382:322:11534:-833.745,0,-912.018	1/1:165:0,165:0:0:165:5920:-530.797,-49.67,0	0/1:89:54,35:54:1931:35:1252:-85.9231,0,-147.266	0/1:198:114,84:114:4080:84:3009:-210.789,0,-307.776	1/1:159:0,159:0:0:159:5678:-510.042,-47.8638,0	1/1:123:1,122:1:36:122:4380:-388.663,-33.4284,0	1/1:78:3,75:3:108:75:2692:-231.851,-13.4052,0	0/1:1475:754,720:754:27005:720:25770:-1866.55,0,-1985.25	1/1:65:1,64:1:36:64:2304:-204.339,-16.8307,0	1/1:99:0,99:0:0:99:3544:-317.841,-29.802,0	1/1:277:1,276:1:36:276:9864:-881.801,-79.787,0	1/1:53:0,53:0:0:53:1904:-171.436,-15.9546,0	1/1:87:0,87:0:0:87:3123:-280.578,-26.1896,0	0/1:62:30,32:30:1076:32:1148:-84.8061,0,-78.4272	1/1:121:0,121:0:0:121:4339:-389.829,-36.4246,0	0/1:20:10,10:10:360:10:360:-26.6414,0,-26.7237	1/1:62:0,62:0:0:62:2211:-198.77,-18.6639,0	1/1:76:1,75:1:36:75:2690:-237.644,-19.28,0	1/1:692:1,691:1:36:691:24832:-2222.83,-204.714,0	0/1:1234:569,665:569:20310:665:23830:-1766.31,0,-1455.67	0/1:94:64,30:64:2296:30:1080:-69.0621,0,-178.332	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	1/1:90:0,90:0:0:90:3236:-291.084,-27.0927,0
chr06	4358204	.	T	C	209855	PASS	AB=0.475658;ABP=30.179;AC=145;AF=0.771277;AN=188;AO=9840;CIGAR=1X;DP=12643;DPB=12643;DPRA=0;EPP=21335.6;EPPR=6048.44;GTI=1;LEN=1;MEANALT=1.03191;MQM=54.1561;MQMR=59.5021;NS=94;NUMALT=1;ODDS=2.70471;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=351767;QR=100194;RO=2800;RPL=7;RPP=21309.5;RPPR=6022.48;RPR=9833;RUN=1;SAF=3;SAP=21344.2;SAR=9837;SRF=3;SRP=6057.1;SRR=2797;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:120:74,46:74:2652:46:1656:-111.845,0,-202.786	1/1:83:0,83:0:0:83:2959:-264.301,-24.9855,0	0/1:161:85,76:85:3022:76:2704:-193.42,0,-223.579	1/1:377:0,377:0:0:377:13494:-1211.16,-113.488,0	0/1:101:54,47:54:1932:47:1688:-121.361,0,-143.719	0/1:116:61,55:61:2173:55:1972:-140.963,0,-160.13	1/1:201:0,201:0:0:201:7165:-643.698,-60.507,0	0/1:240:126,114:126:4528:114:4058:-291.615,0,-335.356	0/1:200:98,102:98:3508:102:3635:-265.336,0,-255.634	0/1:156:89,67:89:3200:67:2355:-164.815,0,-241.25	0/1:44:20,24:20:712:24:856:-64.0463,0,-51.1032	1/1:96:0,96:0:0:96:3456:-309.351,-28.8989,0	0/1:82:50,32:50:1792:32:1152:-78.1986,0,-136.699	0/1:65:29,36:29:1040:36:1292:-96.8465,0,-74.3336	1/1:92:0,92:0:0:92:3295:-296.291,-27.6948,0	0/1:62:32,30:32:1148:30:1072:-77.9483,0,-84.9614	1/1:41:0,41:0:0:41:1464:-131.193,-12.3422,0	1/1:43:0,43:0:0:43:1525:-136.647,-12.9443,0	1/1:29:0,29:0:0:29:1029:-92.4673,-8.72987,0	1/1:362:1,361:1:36:361:12896:-1155.29,-105.375,0	0/1:199:107,92:107:3814:92:3295:-235.655,0,-283.319	1/1:233:0,233:0:0:233:8326:-748.098,-70.14,0	0/1:217:101,116:101:3605:116:4160:-308.344,0,-259.316	0/1:142:79,63:79:2832:63:2260:-160.218,0,-212.354	0/1:166:97,68:97:3473:68:2425:-168.1,0,-262.595	1/1:422:3,419:3:108:419:14924:-1330.49,-116.96,0	1/1:289:0,289:0:0:289:10330:-926.253,-86.9977,0	1/1:24:0,24:0:0:24:848:-76.4741,-7.22472,0	0/1:436:221,215:221:7902:215:7658:-557.215,0,-579.919	0/1:208:109,99:109:3904:99:3564:-257.506,0,-287.847	1/1:204:7,197:7:237:197:7057:-612.073,-39.7511,0	0/1:11:7,4:7:252:4:144:-9.98341,0,-19.713	1/1:17:0,17:0:0:17:600:-54.1333,-5.11751,0	0/1:9:6,3:6:216:3:108:-7.34057,0,-17.0812	0/1:6:5,1:5:180:1:36:-1.78305,0,-14.7459	1/1:23:0,23:0:0:23:824:-74.3,-6.92369,0	0/1:198:105,92:105:3761:92:3308:-237.704,0,-279.085	1/1:215:1,214:1:36:214:7642:-681.675,-61.1232,0	1/1:37:0,37:0:0:37:1320:-118.803,-11.1381,0	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	1/1:264:0,264:0:0:264:9480:-849.972,-79.4719,0	1/1:25:0,25:0:0:25:900:-81.0803,-7.52575,0	0/1:321:164,157:164:5872:157:5631:-408.201,0,-431.47	0/1:60:23,37:23:824:37:1332:-101.866,0,-56.4015	0/1:66:28,38:28:995:38:1364:-102.831,0,-69.9844	0/1:182:94,88:94:3342:88:3160:-229.376,0,-246.015	0/1:140:74,66:74:2645:66:2354:-169.323,0,-196.106	1/1:334:5,329:5:180:329:11772:-1040.41,-83.992,0	1/1:135:1,134:1:36:134:4771:-424.968,-37.0434,0	0/1:223:130,93:130:4663:93:3340:-231.394,0,-352.678	0/1:221:107,114:107:3817:114:4083:-300.595,0,-277.195	0/1:13:9,4:9:324:4:144:-9.37894,0,-25.5901	1/1:138:0,138:0:0:138:4945:-442.52,-41.5421,0	1/1:115:0,115:0:0:115:4104:-369.062,-34.6185,0	0/1:22:8,14:8:279:14:504:-38.9549,0,-18.8249	0/1:177:86,91:86:3080:91:3249:-238.455,0,-223.232	1/1:99:0,99:0:0:99:3552:-319.563,-29.802,0	0/1:24:15,9:15:540:9:320:-21.9094,0,-41.7118	0/1:21:3,18:3:108:18:629:-50.5972,0,-3.75354	0/1:172:91,81:91:3238:81:2874:-205.353,0,-239.337	1/1:100:0,100:0:0:100:3569:-320.817,-30.103,0	0/1:18:11,7:11:396:7:252:-17.5986,0,-30.5618	1/1:268:2,266:2:72:266:9503:-846.82,-73.8393,0	1/1:244:6,238:6:216:238:8485:-740.807,-53.6608,0	1/1:92:0,92:0:0:92:3297:-295.812,-27.6948,0	1/1:156:0,156:0:0:156:5583:-501.575,-46.9607,0	1/1:192:2,190:2:72:190:6790:-602.492,-50.961,0	1/1:148:0,148:0:0:148:5297:-475.445,-44.5524,0	1/1:29:0,29:0:0:29:1040:-93.2256,-8.72987,0	1/1:53:1,52:1:36:52:1846:-161.827,-12.3563,0	1/1:50:0,50:0:0:50:1788:-159.653,-15.0515,0	0/1:32:19,13:19:676:13:464:-32.4307,0,-51.5303	1/1:192:1,191:1:36:191:6851:-609.011,-54.1995,0	0/1:138:65,73:65:2340:73:2609:-192.319,0,-169.123	0/1:251:142,108:142:5108:108:3871:-271.878,0,-384.395	1/1:233:0,233:0:0:233:8347:-749.649,-70.14,0	1/1:215:0,215:0:0:215:7673:-687.57,-64.7215,0	1/1:158:0,158:0:0:158:5648:-503.65,-47.5627,0	0/1:27:14,13:14:504:13:464:-33.8623,0,-37.5621	1/1:186:0,186:0:0:186:6656:-597.377,-55.9916,0	1/1:204:2,202:2:72:202:7233:-637.969,-54.5734,0	1/1:312:2,310:2:72:310:11031:-983.619,-87.0846,0	1/1:61:0,61:0:0:61:2179:-196.056,-18.3628,0	1/1:84:1,83:1:36:83:2971:-263.751,-21.6908,0	0/1:57:23,34:23:820:34:1212:-91.8622,0,-56.9638	1/1:99:0,99:0:0:99:3547:-319.012,-29.802,0	0/1:36:18,18:18:644:18:635:-46.5022,0,-46.0554	1/1:55:0,55:0:0:55:1959:-174.814,-16.5567,0	1/1:71:0,71:0:0:71:2545:-227.478,-21.3731,0	1/1:32:0,32:0:0:32:1148:-103.04,-9.63296,0	0/1:63:35,28:35:1252:28:1004:-71.3245,0,-94.0202	0/1:76:51,25:51:1836:25:896:-57.8567,0,-142.547	1/1:118:0,118:0:0:118:4229:-380.277,-35.5215,0	1/1:111:0,111:0:0:111:3977:-356.178,-33.4143,0
chr06	4367073	.	G	A	31702.9	PASS	AB=0.489921;ABP=6.46837;AC=43;AF=0.228723;AN=188;AO=1935;CIGAR=1X;DP=11138;DPB=11138;DPRA=0.89649;EPP=4204.81;EPPR=19956.7;GTI=4;LEN=1;MEANALT=1.01818;MQM=60;MQMR=59.9886;NS=94;NUMALT=1;ODDS=0.174298;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69022;QR=324562;RO=9197;RPL=0;RPP=4204.81;RPPR=19956.7;RPR=1935;RUN=1;SAF=0;SAP=4204.81;SAR=1935;SRF=0;SRP=19974;SRR=9197;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:13,15:13:459:15:540:-40.5077,0,-33.2152	0/0:169:168,1:168:5921:1:36:0,-47.2758,-529.405	0/1:254:113,141:113:4024:141:5037:-377.014,0,-285.886	0/0:363:362,0:362:12821:0:0:0,-108.973,-1153.36	0/1:79:49,30:49:1747:30:1080:-73.7319,0,-133.732	0/1:40:22,18:22:769:18:648:-46.6107,0,-57.4874	0/0:161:161,0:161:5720:0:0:0,-48.4658,-514.917	0/1:183:96,87:96:3394:87:3111:-225.128,0,-250.586	0/1:79:33,46:33:1150:46:1594:-119.964,0,-80.0231	0/1:94:49,45:49:1737:45:1616:-117.433,0,-128.316	0/1:21:7,14:7:252:14:481:-37.2934,0,-16.7073	0/0:55:55,0:55:1911:0:0:0,-16.5566,-172.265	0/1:64:34,30:34:1158:30:1080:-78.2473,0,-85.2529	0/1:29:20,9:20:692:9:320:-20.4125,0,-53.8687	0/0:46:46,0:46:1613:0:0:0,-13.8474,-145.457	0/1:39:23,16:23:793:16:576:-40.4348,0,-59.9447	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/0:35:35,0:35:1217:0:0:0,-10.536,-109.831	0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6803	0/0:362:361,0:361:12790:0:0:0,-108.672,-1150.57	0/1:138:80,58:80:2778:58:2067:-144.758,0,-208.715	0/0:274:274,0:274:9673:0:0:0,-82.4822,-870.527	0/1:75:38,37:38:1356:37:1324:-96.8848,0,-99.7632	0/1:120:65,55:65:2253:55:1967:-141.181,0,-166.902	0/1:87:42,45:42:1481:45:1616:-119.54,0,-107.393	0/0:434:434,0:434:15422:0:0:0,-130.647,-1387.7	0/0:313:313,0:313:11021:0:0:0,-94.2224,-991.8	0/0:20:20,0:20:684:0:0:0,-6.0206,-61.8765	0/1:404:206,198:206:7236:198:7086:-516.183,0,-529.683	0/1:137:58,79:58:2075:79:2824:-213.158,0,-145.779	0/0:115:113,2:113:4009:2:72:0,-27.7817,-354.164	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:4:4,0:4:131:0:0:0,-1.20412,-12.1135	0/1:8:5,3:5:176:3:104:-7.29457,0,-13.7768	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/1:133:70,63:70:2419:63:2251:-162.816,0,-177.299	0/0:280:279,1:279:9851:1:36:0,-80.6901,-882.942	0/0:27:27,0:27:925:0:0:0,-8.12781,-83.5593	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:194:193,0:193:6829:0:0:0,-58.0988,-614.327	0/0:26:26,0:26:910:0:0:0,-7.82678,-82.2141	0/1:272:155,117:155:5454:117:4154:-292.163,0,-409.111	0/1:50:18,32:18:628:32:1144:-88.218,0,-41.794	0/1:40:20,20:20:708:20:692:-50.5574,0,-52.0044	0/1:85:37,48:37:1300:48:1719:-129.407,0,-91.7109	0/1:215:112,103:112:3975:103:3683:-266.951,0,-293.219	0/0:299:298,1:298:10416:1:36:0,-86.4097,-933.774	0/0:188:186,2:186:6581:2:72:0,-49.7569,-585.537	0/1:172:79,93:79:2824:93:3327:-247.87,0,-202.622	0/1:262:145,117:145:5093:117:4112:-291.396,0,-379.648	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:208:208,0:208:7374:0:0:0,-62.6142,-663.711	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:37:23,14:23:782:14:504:-34.56,0,-59.5528	0/1:211:92,119:92:3249:119:4264:-320.421,0,-229.115	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:55:30,25:30:1037:25:900:-64.7644,0,-77.0776	0/0:89:88,1:88:3116:1:36:0,-23.1934,-277.068	0/1:9:7,2:7:224:2:68:-3.74844,0,-17.7635	0/0:379:379,0:379:13406:0:0:0,-114.09,-1206.34	0/0:227:226,1:226:7998:1:36:0,-64.7355,-716.221	0/0:51:51,0:51:1806:0:0:0,-15.3525,-162.82	0/0:188:187,1:187:6642:1:36:0,-52.9954,-594.26	0/0:226:226,0:226:8005:0:0:0,-68.0328,-719.773	0/0:123:122,1:122:4303:1:36:0,-33.4284,-383.847	0/0:11:11,0:11:364:0:0:0,-3.31133,-33.0784	0/0:106:106,0:106:3748:0:0:0,-31.9092,-337.522	0/0:64:64,0:64:2245:0:0:0,-19.2659,-202.313	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/0:171:171,0:171:6035:0:0:0,-51.4761,-543.259	0/1:71:40,31:40:1421:31:1101:-78.0252,0,-106.622	0/1:155:83,72:83:2912:72:2561:-184.079,0,-215.654	0/0:273:272,0:272:9636:0:0:0,-81.8802,-866.877	0/0:155:155,0:155:5480:0:0:0,-46.6596,-493.33	0/0:119:119,0:119:4221:0:0:0,-35.8226,-380.072	0/1:20:5,15:5:176:15:540:-42.9159,0,-10.1644	0/0:181:180,0:180:6376:0:0:0,-54.1854,-573.573	0/0:231:231,0:231:8140:0:0:0,-69.5379,-732.624	0/0:303:301,1:301:10635:1:36:0,-87.6726,-953.473	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:58:58,0:58:2011:0:0:0,-17.4597,-181.261	0/1:75:32,43:32:1133:43:1531:-115.505,0,-79.6994	0/0:119:117,2:117:4094:2:72:0,-28.9858,-361.815	0/1:31:18,13:18:648:13:464:-32.7656,0,-49.32	0/0:61:61,0:61:2128:0:0:0,-18.3628,-191.784	0/0:48:48,0:48:1674:0:0:0,-14.4494,-150.942	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/1:45:25,20:25:864:20:708:-50.4992,0,-64.526	0/1:41:19,22:19:680:22:788:-58.9026,0,-49.1869	0/0:200:199,1:199:7038:1:36:0,-56.6077,-629.889	0/0:70:70,0:70:2437:0:0:0,-21.0721,-219.584
chr06	4405177	.	C	G	6.77344e-12	PASS	AB=0.207794;ABP=5160.37;AC=36;AF=0.191489;AN=188;AO=1535;CIGAR=1X;DP=18798;DPB=18798;DPRA=0.973543;EPP=3336.22;EPPR=37434.9;GTI=32;LEN=1;MEANALT=1.08333;MQM=24.0658;MQMR=59.9781;NS=94;NUMALT=1;ODDS=64.0403;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54591;QR=616414;RO=17250;RPL=0;RPP=3336.22;RPPR=37460.9;RPR=1535;RUN=1;SAF=1535;SAP=3336.22;SAR=0;SRF=17247;SRP=37434.9;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:104:76,28:76:2720:28:1004:-30.6389,0,-213.736	0/0:172:172,0:172:6144:0:0:0,-51.7772,-553.06	0/1:309:237,72:237:8468:72:2543:-56.494,0,-669.106	0/0:490:490,0:490:17492:0:0:0,-147.505,-1573.91	0/1:47:38,9:38:1364:9:320:-4.8125,0,-108.912	0/1:28:17,11:17:612:11:396:-17.763,0,-46.9846	0/0:247:247,0:247:8779:0:0:0,-74.3544,-790.102	0/1:252:202,50:202:7221:50:1784:-27.8268,0,-574.084	0/1:263:214,49:214:7645:49:1726:-20.4508,0,-608.916	0/0:223:195,28:195:7000:28:1008:0,-8.32717,-571.189	0/1:160:122,38:122:4365:38:1364:-29.4524,0,-344.858	0/0:273:273,0:273:9748:0:0:0,-82.1812,-877.243	0/1:191:142,49:142:5088:49:1752:-44.2157,0,-400.567	0/1:172:131,41:131:4661:41:1472:-34.7243,0,-367.876	0/0:194:193,0:193:6904:0:0:0,-58.0988,-621.064	0/1:150:121,28:121:4320:28:987:-12.6195,0,-343.695	0/0:86:85,0:85:3040:0:0:0,-25.5875,-273.51	0/0:69:69,0:69:2471:0:0:0,-20.7711,-222.643	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.839	0/0:445:444,0:444:15862:0:0:0,-133.657,-1426.91	0/1:459:357,102:357:12734:102:3615:-73.5016,0,-1007.71	0/0:182:182,0:182:6497:0:0:0,-54.7875,-584.815	0/1:231:186,45:186:6656:45:1616:-22.9478,0,-529.51	0/1:203:154,49:154:5516:49:1748:-38.5584,0,-435.456	0/1:169:128,41:128:4561:41:1460:-37.2105,0,-359.653	0/0:533:533,0:533:19052:0:0:0,-160.449,-1714.2	0/0:525:525,0:525:18692:0:0:0,-158.041,-1681.86	0/0:101:101,0:101:3593:0:0:0,-30.404,-323.577	0/1:478:377,101:377:13455:101:3597:-74.2735,0,-1066.85	0/1:202:156,46:156:5577:46:1648:-34.5007,0,-441.244	0/0:252:252,0:252:9013:0:0:0,-75.8596,-811.139	0/0:11:10,1:10:356:1:36:0,-1.03246,-30.1024	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:6:3,3:3:108:3:108:-4.57464,0,-8.26899	0/1:12:10,2:10:356:2:72:-1.97092,0,-28.7689	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:452:386,66:386:13785:66:2376:-5.89015,0,-1104.37	0/0:137:136,1:136:4853:1:36:0,-38.9622,-434.645	0/0:137:137,0:137:4893:0:0:0,-41.2411,-440.434	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:226:225,0:225:8005:0:0:0,-67.7317,-720.117	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:149:113,36:113:4036:36:1258:-29.8126,0,-318.576	0/1:172:138,34:138:4952:34:1209:-18.1691,0,-394.051	0/1:140:117,23:117:4185:23:820:-8.56131,0,-334.686	0/1:237:197,40:197:7032:40:1413:-14.3519,0,-561.601	0/1:164:130,34:130:4656:34:1194:-20.4958,0,-369.832	0/0:306:306,0:306:10895:0:0:0,-92.1152,-980.371	0/0:254:254,0:254:9085:0:0:0,-76.4616,-817.495	0/1:229:175,54:175:6272:54:1944:-45.4965,0,-495.637	0/0:300:265,35:265:9464:35:1260:0,-14.3028,-775.717	0/1:20:14,6:14:489:6:216:-6.51316,0,-38.3183	0/0:262:262,0:262:9384:0:0:0,-78.8699,-844.509	0/0:117:117,0:117:4192:0:0:0,-35.2205,-377.461	0/1:16:12,4:12:432:4:140:-4.4517,0,-34.4047	0/1:341:285,56:285:10180:56:1993:-15.0787,0,-813.477	0/0:91:91,0:91:3236:0:0:0,-27.3937,-291.462	0/1:11:9,2:9:301:2:72:-1.19838,0,-24.1024	0/0:37:32,5:32:1152:5:176:0,-0.254081,-93.1061	0/1:203:165,37:165:5897:37:1294:-15.1646,0,-469.671	0/0:231:230,1:230:8235:1:36:0,-67.2591,-738.881	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:321:319,0:319:11425:0:0:0,-96.0286,-1027.76	0/0:362:359,3:359:12845:3:108:0,-102.592,-1149.48	0/0:186:185,0:185:6581:0:0:0,-55.6905,-592.015	0/0:177:177,0:177:6322:0:0:0,-53.2823,-569.07	0/0:385:383,2:383:13696:2:72:0,-111.567,-1228.09	0/0:290:290,0:290:10346:0:0:0,-87.2987,-931.064	0/0:130:130,0:130:4652:0:0:0,-39.1339,-418.842	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/0:62:54,8:54:1932:8:284:0,-1.27636,-156.769	0/0:217:216,0:216:7705:0:0:0,-65.0225,-693.122	0/1:185:136,49:136:4884:49:1718:-49.1359,0,-384.02	0/1:536:440,96:440:15686:96:3399:-35.7846,0,-1249.87	0/0:346:346,0:346:12346:0:0:0,-104.156,-1110.98	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.753	0/0:229:229,0:229:8216:0:0:0,-68.9359,-739.45	0/0:33:29,4:29:1036:4:144:0,-1.50219,-85.1221	0/0:266:264,1:264:9460:1:21:0,-77.9579,-849.182	0/0:189:189,0:189:6753:0:0:0,-56.8947,-607.844	0/0:472:471,1:471:16818:1:32:0,-139.837,-1511.02	0/0:149:149,0:149:5324:0:0:0,-44.8535,-479.295	0/0:172:172,0:172:6118:0:0:0,-51.7772,-550.72	0/1:131:111,20:111:3984:20:720:-2.97813,0,-319.227	0/0:311:311,0:311:11129:0:0:0,-93.6203,-1001.5	0/1:45:32,13:32:1140:13:468:-14.5242,0,-89.3629	0/0:200:200,0:200:7147:0:0:0,-60.206,-643.288	0/0:200:200,0:200:7172:0:0:0,-60.206,-645.465	0/0:146:146,0:146:5224:0:0:0,-43.9504,-470.229	0/1:274:218,55:218:7824:55:1957:-32.6026,0,-621.645	0/1:213:157,56:157:5605:56:1975:-51.5308,0,-440.453	0/0:220:219,0:219:7844:0:0:0,-65.9256,-705.628	0/0:307:307,0:307:10967:0:0:0,-92.4162,-986.86
chr06	4405183	.	G	A	4.48991e-12	PASS	AB=0.204783;ABP=5351.97;AC=37;AF=0.196809;AN=188;AO=1537;CIGAR=1X;DP=19054;DPB=19054;DPRA=1.02757;EPP=3340.56;EPPR=37977.7;GTI=32;LEN=1;MEANALT=1.14;MQM=24.1295;MQMR=59.9779;NS=94;NUMALT=1;ODDS=81.5846;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54916;QR=624253;RO=17500;RPL=0;RPP=3340.56;RPPR=38003.8;RPR=1537;RUN=1;SAF=1537;SAP=3340.56;SAR=0;SRF=17497;SRP=37977.7;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:106:78,28:78:2766:28:993:-29.7116,0,-217.27	0/0:176:176,0:176:6301:0:0:0,-52.9813,-567.18	0/1:312:239,73:239:8524:73:2613:-59.2874,0,-673.235	0/0:500:500,0:500:17857:0:0:0,-150.515,-1606.73	0/1:53:44,9:44:1580:9:324:-3.06802,0,-126.537	0/1:27:17,10:17:612:10:360:-16.0165,0,-47.2856	0/0:254:254,0:254:9036:0:0:0,-76.4616,-813.218	0/1:249:199,50:199:7097:50:1777:-28.4261,0,-563.832	0/1:264:214,49:214:7627:49:1741:-20.6717,0,-606.935	0/0:229:199,29:199:7099:29:1040:0,-7.04221,-577.014	0/1:162:124,38:124:4411:38:1364:-28.8504,0,-348.395	0/0:279:279,0:279:9951:0:0:0,-83.9874,-895.531	0/1:191:142,49:142:5096:49:1764:-44.2972,0,-401.285	0/1:172:131,41:131:4685:41:1472:-34.7191,0,-370.032	0/0:198:198,0:198:7087:0:0:0,-59.6039,-637.889	0/1:149:123,26:123:4407:26:936:-8.69987,0,-351.252	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.732	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.681	0/0:458:457,1:457:16237:1:36:0,-134.273,-1457.41	0/1:467:363,101:363:12916:101:3620:-70.4264,0,-1022.22	0/0:189:189,0:189:6730:0:0:0,-56.8947,-605.776	0/1:232:187,45:187:6697:45:1620:-23.801,0,-532.963	0/1:202:154,48:154:5475:48:1720:-38.0081,0,-432.068	0/1:171:131,40:131:4662:40:1421:-34.5663,0,-368.135	0/0:544:544,0:544:19396:0:0:0,-163.76,-1745.18	0/0:527:526,0:526:18823:0:0:0,-158.342,-1693.27	0/0:101:101,0:101:3613:0:0:0,-30.404,-325.374	0/1:492:390,102:390:13932:102:3649:-72.5507,0,-1105.54	0/1:207:162,45:162:5736:45:1608:-30.6276,0,-454.044	0/0:254:254,0:254:9059:0:0:0,-76.4616,-815.245	0/0:12:11,1:11:392:1:21:0,-1.72347,-33.7312	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:7:4,3:4:129:3:108:-4.27361,0,-9.82045	0/1:12:10,2:10:352:2:72:-1.97092,0,-28.4058	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/1:456:391,65:391:13983:65:2340:-2.63521,0,-1120.96	0/0:136:135,1:135:4822:1:36:0,-38.6612,-431.853	0/0:135:135,0:135:4856:0:0:0,-40.639,-437.191	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:237:236,0:236:8339:0:0:0,-71.0431,-750.16	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.743	0/1:154:117,37:117:4185:37:1290:-29.452,0,-330.472	0/1:174:141,33:141:5006:33:1188:-15.8682,0,-398.306	0/1:142:119,23:119:4198:23:828:-8.01373,0,-335.255	0/1:239:201,38:201:7163:38:1338:-8.60971,0,-572.779	0/1:164:130,34:130:4642:34:1193:-21.4684,0,-368.57	0/0:313:313,0:313:11159:0:0:0,-94.2224,-1004.12	0/0:254:254,0:254:9067:0:0:0,-76.4616,-815.875	0/1:236:182,54:182:6391:54:1940:-43.3621,0,-504.239	0/0:311:275,36:275:9838:36:1292:0,-15.1075,-806.848	0/1:22:14,8:14:485:8:288:-10.5078,0,-37.3543	0/0:265:263,0:263:9421:0:0:0,-79.1709,-847.483	0/0:116:116,0:116:4126:0:0:0,-34.9195,-371.523	0/1:16:12,4:12:428:4:144:-4.79909,0,-34.0423	0/1:341:284,56:284:10070:56:1988:-14.9049,0,-803.523	0/0:91:91,0:91:3227:0:0:0,-27.3937,-290.647	0/1:11:9,2:9:294:2:72:-1.19838,0,-23.4642	0/1:36:31,5:31:1116:5:180:-0.0811597,0,-89.9146	0/1:205:168,37:168:5977:37:1328:-15.3491,0,-476.326	0/0:236:235,1:235:8399:1:36:0,-68.7642,-753.627	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:332:331,0:331:11831:0:0:0,-99.6409,-1064.29	0/0:365:358,3:358:12787:3:108:0,-102.575,-1144.19	0/0:187:187,0:187:6662:0:0:0,-56.2926,-599.657	0/0:177:177,0:177:6317:0:0:0,-53.2823,-568.621	0/0:387:385,2:385:13662:2:72:0,-112.169,-1225.03	0/0:292:292,0:292:10400:0:0:0,-87.9008,-935.921	0/0:134:134,0:134:4807:0:0:0,-40.338,-432.784	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/0:101:101,0:101:3593:0:0:0,-30.404,-323.577	0/0:64:56,8:56:2008:8:288:0,-1.61848,-163.343	0/0:218:216,1:216:7676:1:36:0,-62.0101,-687.348	0/1:188:137,51:137:4867:51:1805:-53.6503,0,-381.588	0/1:539:442,96:442:15744:96:3429:-35.4683,0,-1254.48	0/0:356:356,0:356:12765:0:0:0,-107.167,-1148.66	0/0:136:136,0:136:4827:0:0:0,-40.9401,-434.584	0/0:231:231,0:231:8250:0:0:0,-69.5379,-742.51	0/0:32:28,4:28:1000:4:144:0,-1.20116,-81.8836	0/0:270:269,1:269:9603:1:36:0,-77.6798,-860.622	0/0:188:188,0:188:6744:0:0:0,-56.5936,-607.032	0/0:480:478,2:478:17098:2:72:0,-138.911,-1532.8	0/0:151:151,0:151:5416:0:0:0,-45.4555,-487.569	0/0:172:172,0:172:6125:0:0:0,-51.7772,-551.348	0/1:128:109,19:109:3901:19:680:-1.80331,0,-312.663	0/0:311:311,0:311:11096:0:0:0,-93.6203,-998.527	0/1:46:32,14:32:1148:14:504:-16.2734,0,-89.7825	0/0:207:207,0:207:7379:0:0:0,-62.3132,-664.156	0/0:201:201,0:201:7184:0:0:0,-60.507,-646.545	0/0:143:143,0:143:5132:0:0:0,-43.0473,-461.951	0/1:277:221,56:221:7881:56:2012:-34.1626,0,-625.931	0/1:217:161,56:161:5754:56:1990:-50.6783,0,-452.65	0/0:222:222,0:222:7949:0:0:0,-66.8287,-715.431	0/0:311:311,0:311:11111:0:0:0,-93.6203,-999.809
chr06	4410511	.	A	C,T	242668	PASS	AB=0.511936,0.487805;ABP=7.7792,7.9888;AC=145,43;AF=0.771277,0.228723;AN=188;AO=8978,1897;CIGAR=1X,1X;DP=10882;DPB=10882;DPRA=0,0.861008;EPP=18614.1,4010.15;EPPR=13.8677;GTI=1;LEN=1,1;MEANALT=1.58511,2.01887;MQM=59.9895,59.3727;MQMR=60;NS=94;NUMALT=2;ODDS=7.12939;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=319524,67644;QR=180;RO=5;RPL=102,13;RPP=18622.6,4010.15;RPPR=13.8677;RPR=8876,1884;RUN=1,1;SAF=8977,1897;SAP=19489.8,4122.29;SAR=1,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:49:0,22,27:0:0:22,27:779,953:-141.411,-77.9555,-71.3328,-63.8094,0,-55.6816	1/1:230:0,230,0:0:0:230,0:8164,0:-734.78,-69.2369,0,-734.78,-69.2369,-734.78	1/2:165:0,82,83:0:0:82,83:2932,2957:-480.257,-241.184,-216.5,-239.43,0,-214.444	1/1:327:0,327,0:0:0:327,0:11613,0:-1045.05,-98.4368,0,-1045.05,-98.4368,-1045.05	1/2:91:0,35,56:0:0:35,56:1247,2001:-264.924,-163.282,-152.746,-101.998,0,-85.1403	1/2:51:0,27,24:0:0:27,24:968,864:-149.804,-70.8537,-62.7259,-79.3096,0,-72.0848	1/1:207:0,207,0:0:0:207,0:7369,0:-663.261,-62.3132,0,-663.261,-62.3132,-663.261	1/2:210:0,109,101:0:0:109,101:3900,3600:-611.783,-293.758,-260.946,-318.382,0,-287.978	1/2:96:0,52,44:0:0:52,44:1856,1572:-279.836,-128.526,-112.873,-151.666,0,-138.421	1/2:139:0,73,66:0:0:73,66:2615,2348:-404.965,-191.7,-169.725,-213.622,0,-193.754	1/2:35:0,14,21:0:0:14,21:500,752:-102.449,-61.6846,-57.4702,-41.1218,0,-34.8001	1/1:61:0,61,0:0:0:61,0:2181,0:-196.555,-18.3628,0,-196.555,-18.3628,-196.555	1/2:47:0,29,18:0:0:29,18:1044,644:-138.059,-52.8721,-44.1422,-85.5449,0,-80.1264	1/2:33:0,14,19:0:0:14,19:504,680:-96.8894,-55.7645,-51.5501,-41.4837,0,-35.7641	1/1:54:0,54,0:0:0:54,0:1919,0:-172.986,-16.2556,0,-172.986,-16.2556,-172.986	1/2:43:0,22,21:0:0:22,21:752,752:-122.599,-61.5773,-54.9547,-61.3715,0,-55.0498	1/1:38:0,38,0:0:0:38,0:1359,0:-122.61,-11.4391,0,-122.61,-11.4391,-122.61	1/1:36:0,36,0:0:0:36,0:1266,0:-114.241,-10.8371,0,-114.241,-10.8371,-114.241	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:290:0,290,0:0:0:290,0:10357,0:-932.051,-87.2987,0,-932.051,-87.2987,-932.051	1/2:182:0,88,94:0:0:88,94:3127,3339:-527.15,-272.338,-245.847,-255.167,0,-226.87	1/1:200:0,199,0:0:0:199,0:7089,0:-637.713,-59.905,0,-637.713,-59.905,-637.713	1/2:140:0,83,57:0:0:83,57:2942,1992:-401.855,-162.177,-137.191,-240.029,0,-222.87	1/2:163:0,95,68:0:0:95,68:3391,2425:-474.221,-197.77,-169.172,-276.807,0,-256.337	1/2:77:0,35,42:0:0:35,42:1248,1502:-224.49,-122.758,-112.222,-102.089,0,-89.4456	1/1:412:0,412,0:0:0:412,0:14622,0:-1315.74,-124.024,0,-1315.74,-124.024,-1315.74	1/1:244:0,244,0:0:0:244,0:8685,0:-781.646,-73.4513,0,-781.646,-73.4513,-781.646	1/1:17:0,17,0:0:0:17,0:604,0:-54.6906,-5.11751,0,-54.6906,-5.11751,-54.6906	1/2:301:0,134,167:0:0:134,167:4753,5953:-872.703,-485.465,-445.127,-387.593,0,-337.321	1/2:144:0,79,65:0:0:79,65:2817,2324:-419.251,-189.621,-165.84,-229.987,0,-210.42	1/1:211:0,208,2:0:0:208,2:7408,63:-666.452,-62.6142,0,-661.386,-57.5514,-660.784	1/2:20:0,9,11:0:0:9,11:320,392:-58.3851,-32.3078,-29.5985,-26.4331,0,-23.1218	1/1:50:0,50,0:0:0:50,0:1756,0:-158.321,-15.0515,0,-158.321,-15.0515,-158.321	1/2:15:0,8,7:0:0:8,7:288,252:-44.4211,-20.9217,-18.5135,-23.8592,0,-21.752	1/2:19:0,4,15:0:0:4,15:144,540:-56.1708,-44.4211,-43.217,-12.1095,0,-7.59405	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/2:143:0,87,56:0:0:87,56:3091,2016:-416.655,-164.784,-138.594,-252.229,0,-235.371	1/1:220:0,220,0:0:0:220,0:7838,0:-705.451,-66.2266,0,-705.451,-66.2266,-705.451	1/1:53:0,53,0:0:0:53,0:1895,0:-170.827,-15.9546,0,-170.827,-15.9546,-170.827	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:232:0,232,0:0:0:232,0:8249,0:-742.425,-69.839,0,-742.425,-69.839,-742.425	1/1:49:0,49,0:0:0:49,0:1743,0:-157.154,-14.7505,0,-157.154,-14.7505,-157.154	1/2:162:0,80,82:0:0:80,82:2842,2911:-469.031,-237.45,-213.368,-231.935,0,-207.251	1/2:80:0,46,34:0:0:46,34:1652,1220:-234.549,-99.7866,-85.9392,-135.121,0,-124.886	1/2:43:0,21,22:0:0:21,22:744,792:-125.571,-64.9649,-58.6433,-60.9627,0,-54.34	1/2:137:0,89,48:0:0:89,48:3173,1719:-399.139,-140.503,-113.711,-258.994,0,-244.544	1/2:153:0,74,79:0:0:74,79:2618,2823:-443.683,-230.449,-208.173,-213.59,0,-189.809	1/1:222:0,221,1:0:0:221,1:7853,36:-706.442,-66.5276,0,-703.504,-63.2304,-703.203	1/1:150:0,150,0:0:0:150,0:5326,0:-479.478,-45.1545,0,-479.478,-45.1545,-479.478	1/2:143:0,79,64:0:0:79,64:2792,2292:-414.658,-187.275,-163.494,-227.738,0,-208.472	1/2:194:0,97,97:0:0:97,97:3453,3480:-565.449,-284.024,-254.824,-281.782,0,-252.582	1/2:11:0,5,6:0:0:5,6:180,212:-32.3087,-17.6186,-16.1135,-15.0469,0,-13.2407	1/1:178:0,177,1:0:0:177,1:6311,36:-567.352,-53.2823,0,-564.414,-49.9851,-564.113	1/1:75:0,75,0:0:0:75,0:2679,0:-241.354,-22.5773,0,-241.354,-22.5773,-241.354	1/2:28:0,18,10:0:0:18,10:627,360:-80.7142,-29.734,-24.3155,-51.3359,0,-48.3256	1/2:121:0,58,63:0:0:58,63:2084,2218:-350.382,-180.367,-162.907,-170.37,0,-151.405	1/1:122: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chr06	4410604	.	GAAGA	AAAGA,AAAGG	176215	PASS	AB=0.508571,0.483143;ABP=5.24381,11.649;AC=145,43;AF=0.771277,0.228723;AN=188;AO=6931,1703;CIGAR=1X4M,1X3M1X;DP=8690;DPB=8690;DPRA=0,1.01506;EPP=15053.5,3701.03;EPPR=13.8677;GTI=2;LEN=1,5;MEANALT=2.04255,2.66667;MQM=46.9189,33.4839;MQMR=60;NS=94;NUMALT=2;ODDS=2.32961;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=245755,58245;QR=173;RO=5;RPL=0,0;RPP=15053.5,3701.03;RPPR=13.8677;RPR=6931,1703;RUN=1,1;SAF=0,0;SAP=15053.5,3701.03;SAR=6931,1703;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,20,33:0:0:20,33:716,1107:-138.769,-80.9248,-74.9042,-58.1801,0,-48.2461	1/1:76:0,76,0:0:0:76,0:2698,0:-240.436,-22.8783,0,-240.436,-22.8783,-240.436	1/2:104:0,46,58:0:0:46,58:1632,1986:-275.446,-144.218,-130.37,-131.56,0,-114.101	1/1:160:0,159,0:0:0:159,0:5627,0:-500.044,-47.8638,0,-500.044,-47.8638,-500.044	1/2:74:0,44,29:0:0:44,29:1574,992:-199.85,-72.7807,-59.5354,-127.133,0,-118.403	1/2:64:0,38,26:0:0:38,26:1318,883:-169.752,-63.3779,-51.9388,-106.694,0,-98.8669	1/1:142:0,142,0:0:0:142,0:5014,0:-446.541,-42.7463,0,-446.541,-42.7463,-446.541	1/2:125:0,69,54:0:0:69,54:2456,1875:-332.729,-134.236,-113.465,-198.509,0,-182.253	1/2:94:0,36,58:0:0:36,58:1265,1989:-245.743,-143.554,-132.717,-102.522,0,-85.0618	1/2:80:0,40,38:0:0:40,38:1416,1305:-205.602,-91.338,-79.2968,-114.359,0,-102.92	1/2:70:0,38,32:0:0:38,32:1338,1101:-185.587,-77.8383,-66.3991,-108.072,0,-98.439	1/1:68:0,68,0:0:0:68,0:2436,0:-217.816,-20.47,0,-217.816,-20.47,-217.816	1/2:70:0,35,34:0:0:35,34:1228,1154:-183.465,-84.4943,-73.9583,-98.9887,0,-88.7536	1/2:68:0,38,29:0:0:38,29:1368,989:-181.23,-70.3724,-58.9332,-110.915,0,-102.185	1/1:60:0,60,0:0:0:60,0:2152,0:-192.212,-18.0618,0,-192.212,-18.0618,-192.212	1/2:43:0,23,20:0:0:23,20:820,688:-116.422,-50.1271,-43.2034,-66.625,0,-60.6044	1/1:74:0,74,0:0:0:74,0:2648,0:-236.629,-22.2762,0,-236.629,-22.2762,-236.629	1/1:57:0,57,0:0:0:57,0:1999,0:-178.372,-17.1587,0,-178.372,-17.1587,-178.372	1/1:55:0,55,0:0:0:55,0:1928,0:-172.154,-16.5567,0,-172.154,-16.5567,-172.154	1/1:151:0,150,1:0:0:150,1:5306,36:-471.766,-45.1545,0,-469.256,-42.3319,-468.955	1/2:99:0,43,54:0:0:43,54:1536,1822:-253.313,-129.21,-116.265,-124.146,0,-107.891	1/1:117:0,117,0:0:0:117,0:4165,0:-370.227,-35.2205,0,-370.227,-35.2205,-370.227	1/2:115:0,54,61:0:0:54,61:1905,2106:-301.605,-148.321,-132.065,-153.611,0,-135.248	1/2:138:0,73,63:0:0:73,63:2567,2205:-364.323,-157.399,-135.424,-206.995,0,-188.03	1/2:53:0,28,25:0:0:28,25:992,852:-141.575,-62.0036,-53.5747,-79.8982,0,-72.3724	1/1:313:0,311,0:0:0:311,0:10990,0:-974.584,-93.6203,0,-974.584,-93.6203,-974.584	1/1:153:0,152,0:0:0:152,0:5380,0:-480.002,-45.7566,0,-480.002,-45.7566,-480.002	1/1:32:0,32,0:0:0:32,0:1144,0:-102.265,-9.63296,0,-102.265,-9.63296,-102.265	1/2:208:0,117,89:0:0:117,89:4169,3016:-548.28,-213.738,-178.517,-334.599,0,-307.807	1/2:135:0,64,69:0:0:64,69:2288,2382:-355.236,-170.855,-151.589,-184.482,0,-163.711	1/1:132:0,128,2:0:0:128,2:4575,69:-407.355,-38.5318,0,-402.448,-33.5912,-401.845	1/2:12:0,6,6:0:0:6,6:216,214:-33.0907,-15.6446,-13.8384,-17.7829,0,-15.9767	1/1:22:0,22,0:0:0:22,0:783,0:-70.3163,-6.62266,0,-70.3163,-6.62266,-70.3163	1/2:6:0,1,5:0:0:1,5:36,168:-15.6164,-12.6933,-12.3922,-3.2724,0,-1.76725	1/2:12:0,4,8:0:0:4,8:144,278:-32.0921,-20.3959,-19.1918,-12.039,0,-9.63074	1/1:10:0,10,0:0:0:10,0:352,0:-31.819,-3.0103,0,-31.819,-3.0103,-31.819	1/2:188:0,93,95:0:0:93,95:3315,3278:-498.059,-231.485,-203.49,-266.902,0,-238.304	1/1:243:0,242,0:0:0:242,0:8566,0:-763.491,-72.8493,0,-763.491,-72.8493,-763.491	1/1:88:0,88,0:0:0:88,0:3123,0:-279.359,-26.4906,0,-279.359,-26.4906,-279.359	1/2:6:0,2,4:0:0:2,4:72,138:-16.1531,-10.3076,-9.70554,-6.18746,0,-4.98334	1/1:108:0,108,0:0:0:108,0:3840,0:-342.997,-32.5112,0,-342.997,-32.5112,-342.997	1/1:46:0,46,0:0:0:46,0:1636,0:-146.568,-13.8474,0,-146.568,-13.8474,-146.568	1/2:137:0,73,64:0:0:73,64:2602,2185:-365.836,-155.867,-133.892,-210.295,0,-191.029	1/2:61:0,39,21:0:0:39,21:1384,744:-160.278,-49.5674,-37.8272,-110.8,0,-104.478	1/2:59:0,35,24:0:0:35,24:1217,836:-157.24,-59.3383,-48.8023,-98.2239,0,-90.9992	1/2:103:0,65,38:0:0:65,38:2285,1264:-274.847,-91.151,-71.5841,-184.013,0,-172.574	1/2:139:0,58,77:0:0:58,77:2076,2645:-357.022,-188.924,-171.464,-168.127,0,-144.948	1/1:216:0,214,1:0:0:214,1:7573,27:-673.761,-64.4204,0,-671.72,-62.3617,-671.419	1/1:144:0,143,1:0:0:143,1:5079,36:-451.887,-43.0473,0,-449.377,-40.2247,-449.076	1/2:109:0,44,65:0:0:44,65:1579,2247:-286.272,-159.143,-145.897,-127.464,0,-107.897	1/2:197:0,92,102:0:0:92,102:3282,3437:-506.449,-242.788,-215.093,-263.723,0,-233.018	1/2:11:0,5,6:0:0:5,6:176,216:-29.5937,-15.3738,-13.8687,-14.5523,0,-12.7461	1/1:121:0,121,0:0:0:121,0:4306,0:-384.512,-36.4246,0,-384.512,-36.4246,-384.512	1/1:55:0,55,0:0:0:55,0:1948,0:-173.375,-16.5567,0,-173.375,-16.5567,-173.375	1/2:30:0,11,19:0:0:11,19:396,645:-79.1509,-47.1308,-43.8194,-32.3587,0,-26.6391	1/2:102:0,48,53:0:0:48,53:1705,1788:-266.091,-128.387,-113.938,-137.722,0,-121.767	1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chr06	4414406	.	T	G	10128.7	PASS	AB=0.507317;ABP=3.5823;AC=45;AF=0.239362;AN=188;AO=639;CIGAR=1X;DP=3211;DPB=3211;DPRA=1.00312;EPP=1390.58;EPPR=5583.69;GTI=4;LEN=1;MEANALT=1.02128;MQM=56.2848;MQMR=58.9961;NS=94;NUMALT=1;ODDS=0.325252;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22720;QR=91877;RO=2570;RPL=0;RPP=1390.58;RPPR=5583.69;RPR=639;RUN=1;SAF=639;SAP=1390.58;SAR=0;SRF=2570;SRP=5583.69;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:13,9:13:468:9:320:-22.5033,0,-35.8317	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.1701	0/1:43:24,19:24:864:19:684:-48.8554,0,-65.1286	0/0:82:81,0:81:2896:0:0:0,-24.3834,-260.501	0/1:26:14,12:14:504:12:432:-31.3602,0,-37.8609	0/1:26:14,12:14:485:12:432:-31.3681,0,-36.1425	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:60:30,30:30:1076:30:1064:-77.9471,0,-79.0518	0/1:33:8,25:8:288:25:885:-69.9785,0,-16.3306	0/1:27:17,10:17:608:10:360:-23.9753,0,-46.9242	0/1:29:16,13:16:576:13:468:-33.716,0,-43.4451	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.424	0/1:34:20,14:20:716:14:504:-35.3624,0,-54.5215	0/1:31:8,23:8:284:23:828:-65.4267,0,-16.5646	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1272	0/1:24:9,15:9:311:15:536:-41.3026,0,-21.0926	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3568	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6225	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0929	0/0:160:159,1:159:5685:1:36:0,-44.5675,-508.111	0/1:34:18,16:18:629:16:568:-41.1671,0,-46.6838	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0161	0/1:21:4,17:4:144:17:604:-48.3555,0,-6.99199	0/1:10:6,4:6:216:4:140:-9.92262,0,-16.7624	0/1:47:25,22:25:896:22:753:-53.7715,0,-66.7916	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.61	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.294	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5739	0/1:54:32,22:32:1140:22:792:-55.3491,0,-86.6532	0/1:37:15,22:15:536:22:788:-60.0321,0,-37.4211	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:2:1,1:1:36:1:36:-2.99251,0,-2.99521	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1812	1/1:3:0,3:0:0:3:108:-10.0679,-0.90309,0	1/1:6:0,6:0:0:6:201:-18.4059,-1.80618,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9561	0/1:96:52,44:52:1868:44:1545:-110.199,0,-139.47	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.572	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.94	0/1:9:2,7:2:68:7:252:-20.297,0,-3.7471	0/0:54:54,0:54:1929:0:0:0,-16.2556,-173.816	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8241	0/1:36:20,16:20:716:16:563:-40.1106,0,-53.8785	0/1:18:15,3:15:536:3:108:-4.65381,0,-43.1563	0/1:35:18,17:18:648:17:612:-44.4582,0,-47.6856	0/1:37:25,12:25:892:12:417:-26.7178,0,-69.4215	0/1:41:16,25:16:576:25:896:-68.5182,0,-39.68	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.394	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1513	0/1:35:19,16:19:669:16:542:-38.5494,0,-49.9574	0/1:27:12,15:12:432:15:525:-39.4386,0,-31.0872	0/1:9:5,4:5:180:4:144:-10.6006,0,-13.8248	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.937	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4588	0/1:8:1,7:1:32:7:252:-20.6041,0,-0.790895	0/1:57:29,28:29:1032:28:989:-72.0733,0,-76.0104	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5715	0/1:7:3,4:3:104:4:144:-11.2048,0,-7.5956	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:33:13,20:13:453:20:716:-54.5448,0,-31.1556	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.689	0/1:2:1,1:1:36:1:36:-2.99521,0,-2.99621	0/0:78:78,0:78:2747:0:0:0,-23.4803,-247.465	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.199	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9895	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.145	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.9747	0/0:49:46,3:46:1622:3:108:0,-4.67812,-136.169	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2734	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0501	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9245	0/1:4:2,2:2:72:2:72:-5.63069,0,-5.6326	0/0:92:91,1:91:3272:1:36:0,-24.0991,-290.893	0/1:27:15,11:15:532:11:396:-27.7732,0,-40.0223	0/1:48:13,35:13:468:35:1248:-97.9378,0,-28.0002	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.17	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.103	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6245	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.312	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.615	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7311	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.018	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.639	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5233	0/1:18:8,10:8:288:10:352:-26.5887,0,-20.8489	0/0:68:67,1:67:2395:1:36:0,-16.8718,-212.187	0/1:15:8,7:8:284:7:252:-18.4977,0,-21.3855	0/0:31:31,0:31:1112:0:0:0,-9.33193,-99.5207	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.449	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7731	0/1:65:34,31:34:1196:31:1112:-80.7178,0,-88.3483	0/1:41:19,22:19:684:22:792:-59.2362,0,-49.5472	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.654	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.464
chr06	4414435	.	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chr06	4451219	.	A	G	278087	PASS	AB=0.525202;ABP=31.6864;AC=143;AF=0.760638;AN=188;AO=10195;CIGAR=1X;DP=12685;DPB=12685;DPRA=136.387;EPP=22141.2;EPPR=5399.12;GTI=4;LEN=1;MEANALT=1.05376;MQM=59.9815;MQMR=59.9936;NS=94;NUMALT=1;ODDS=0.057404;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=361919;QR=88671;RO=2485;RPL=5075;RPP=3.44161;RPPR=4.62602;RPR=5120;RUN=1;SAF=5075;SAP=3.44161;SAR=5120;SRF=1221;SRP=4.62602;SRR=1264;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:44,27:44:1567:27:964:-65.7037,0,-119.948	1/1:170:0,170:0:0:170:6034:-543.166,-51.1751,0	0/1:196:86,109:86:3075:109:3851:-287.696,0,-217.917	1/1:286:2,284:2:72:284:10087:-900.929,-79.2579,0	0/1:87:36,51:36:1292:51:1824:-138.251,0,-90.3942	0/1:36:18,18:18:644:18:640:-47.0922,0,-47.4535	1/1:100:0,100:0:0:100:3529:-317.747,-30.103,0	0/1:218:92,126:92:3267:126:4436:-333.786,0,-228.625	0/1:174:74,100:74:2632:100:3541:-266.518,0,-184.749	0/1:115:56,59:56:2008:59:2096:-154.292,0,-146.375	0/1:126:54,72:54:1914:72:2553:-192.09,0,-134.606	1/1:187:0,187:0:0:187:6617:-595.615,-56.2926,0	0/1:149:69,79:69:2471:79:2796:-206.968,0,-177.731	0/1:165:90,75:90:3232:75:2661:-190.065,0,-241.431	1/1:124:0,124:0:0:124:4368:-393.294,-37.3277,0	0/1:146:85,61:85:3028:61:2150:-149.815,0,-228.801	1/1:114:0,113:0:0:113:3988:-358.721,-34.0164,0	1/1:95:0,95:0:0:95:3357:-302.338,-28.5979,0	1/1:70:0,70:0:0:70:2496:-224.891,-21.0721,0	1/1:185:0,185:0:0:185:6604:-594.433,-55.6906,0	0/1:182:77,105:77:2752:105:3721:-280.306,0,-193.135	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	0/1:126:52,74:52:1848:74:2648:-200.634,0,-128.67	0/1:117:60,57:60:2129:57:2029:-147.66,0,-156.656	0/1:117:45,72:45:1620:72:2567:-196.059,0,-110.869	1/1:275:1,274:1:36:274:9804:-878.704,-79.185,0	1/1:281:1,280:1:36:280:9976:-894.182,-80.9912,0	1/1:60:0,60:0:0:60:2093:-188.636,-18.0618,0	0/1:311:151,160:151:5390:160:5686:-418.241,0,-391.611	0/1:118:48,70:48:1708:70:2499:-189.641,0,-118.484	1/1:131:3,128:3:108:128:4512:-396.172,-29.3598,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:391:183,208:183:6477:208:7352:-544.029,0,-465.315	1/1:116:1,115:1:36:115:4084:-364.146,-31.3212,0	1/1:125:0,125:0:0:125:4435:-399.322,-37.6288,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:302:0,302:0:0:302:10767:-968.936,-90.9111,0	1/1:58:0,58:0:0:58:2060:-185.672,-17.4597,0	0/1:206:97,109:97:3464:109:3826:-282.523,0,-249.961	0/1:153:73,80:73:2605:80:2815:-207.532,0,-188.639	0/1:108:51,57:51:1811:57:2052:-152.44,0,-130.751	0/1:104:43,61:43:1540:61:2184:-165.519,0,-107.586	0/1:168:75,93:75:2683:93:3324:-248.805,0,-191.141	1/1:238:0,238:0:0:238:8448:-760.195,-71.6451,0	1/1:128:1,127:1:36:127:4491:-400.763,-34.9336,0	0/1:185:77,108:77:2755:108:3829:-289.117,0,-192.501	0/1:107:45,62:45:1616:62:2207:-166.684,0,-113.52	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:191:0,191:0:0:191:6781:-610.365,-57.4967,0	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:164:59,105:59:2107:105:3716:-285.275,0,-140.53	1/1:90:0,90:0:0:90:3202:-288.401,-27.0927,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:15:3,12:3:108:12:424:-33.981,0,-5.55972	0/1:103:48,55:48:1700:55:1962:-145.849,0,-122.277	1/1:185:2,183:2:72:183:6490:-577.354,-48.8538,0	0/1:22:16,6:16:572:6:216:-13.1679,0,-45.1908	1/1:204:1,203:1:36:203:7248:-648.775,-57.8118,0	1/1:240:1,239:1:36:239:8477:-759.337,-68.6489,0	1/1:117:0,117:0:0:117:4170:-375.484,-35.2205,0	1/1:144:0,144:0:0:144:5140:-462.742,-43.3483,0	1/1:192:1,190:1:36:190:6720:-601.194,-54.2583,0	1/1:113:0,113:0:0:113:4030:-362.888,-34.0164,0	1/1:112:0,112:0:0:112:3985:-358.841,-33.7154,0	1/1:113:0,113:0:0:113:4003:-360.46,-34.0164,0	1/1:114:1,113:1:36:113:4032:-359.469,-30.7191,0	0/1:29:19,10:19:684:10:356:-23.6514,0,-53.1605	1/1:135:0,135:0:0:135:4831:-434.944,-40.6391,0	0/1:165:76,88:76:2720:88:3129:-232.255,0,-195.454	0/1:215:110,105:110:3918:105:3674:-266.146,0,-288.092	1/1:183:0,183:0:0:183:6520:-586.879,-55.0885,0	1/1:200:1,199:1:36:199:7072:-632.944,-56.6077,0	1/1:186:0,186:0:0:186:6634:-597.141,-55.9916,0	0/1:16:6,10:6:216:10:345:-26.5643,0,-14.974	1/1:183:0,183:0:0:183:6536:-588.324,-55.0885,0	1/1:127:1,126:1:36:126:4492:-400.849,-34.6325,0	1/1:255:0,255:0:0:255:9067:-816.008,-76.7627,0	1/1:130:0,130:0:0:130:4588:-413.089,-39.1339,0	1/1:141:0,141:0:0:141:4989:-449.16,-42.4452,0	0/1:102:50,52:50:1783:52:1851:-136.164,0,-130.047	1/1:235:2,233:2:72:233:8224:-733.338,-63.9053,0	0/1:71:36,35:36:1296:35:1221:-88.8183,0,-95.5708	1/1:125:0,125:0:0:125:4422:-398.154,-37.6288,0	1/1:155:0,155:0:0:155:5449:-490.543,-46.6597,0	1/1:85:0,85:0:0:85:2970:-267.533,-25.5876,0	0/1:213:127,86:127:4524:86:3039:-209.62,0,-343.208	0/1:151:105,46:105:3751:46:1640:-102.433,0,-292.335	1/1:144:0,144:0:0:144:5153:-463.909,-43.3483,0	1/1:206:0,206:0:0:206:7285:-655.707,-62.0122,0
chr06	4489879	.	C	A	101566	PASS	AB=0.531405;ABP=25.5144;AC=144;AF=0.765957;AN=188;AO=4764;CIGAR=1X;DP=6008;DPB=6008;DPRA=0;EPP=10339.2;EPPR=2689.13;GTI=3;LEN=1;MEANALT=1.03191;MQM=59.6851;MQMR=59.9855;NS=94;NUMALT=1;ODDS=2.71687;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170142;QR=44128;RO=1241;RPL=4764;RPP=10347.9;RPPR=2697.81;RPR=0;RUN=1;SAF=4763;SAP=10339.2;SAR=1;SRF=1240;SRP=2689.13;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:18,12:18:627:12:432:-30.1739,0,-47.7235	1/1:54:0,54:0:0:54:1928:-173.78,-16.2556,0	0/1:63:37,26:37:1305:26:924:-64.5072,0,-98.7845	1/1:88:0,88:0:0:88:3143:-283.081,-26.4906,0	0/1:28:11,17:11:392:17:612:-46.9846,0,-27.1912	0/1:43:16,27:16:567:27:968:-74.4931,0,-38.4164	1/1:36:0,36:0:0:36:1284:-115.862,-10.8371,0	0/1:73:24,49:24:860:49:1752:-135.968,0,-55.7466	0/1:73:27,46:27:968:46:1656:-127.345,0,-65.4622	0/1:68:43,25:43:1535:25:884:-59.405,0,-117.972	0/1:38:18,20:18:644:20:708:-52.6061,0,-46.8515	1/1:54:0,54:0:0:54:1928:-173.78,-16.2556,0	0/1:58:30,28:30:1080:28:1004:-73.208,0,-80.0531	0/1:111:58,53:58:2068:53:1893:-137.228,0,-152.977	1/1:55:0,55:0:0:55:1968:-177.37,-16.5567,0	0/1:42:23,19:23:813:19:680:-48.8859,0,-60.8458	1/1:68:0,68:0:0:68:2435:-219.405,-20.47,0	1/1:50:0,49:0:0:49:1742:-156.627,-14.7505,0	1/1:49:0,49:0:0:49:1748:-157.584,-14.7505,0	1/1:84:0,84:0:0:84:3010:-270.881,-25.2865,0	0/1:213:89,124:89:3135:124:4403:-332.271,0,-218.256	1/1:50:0,50:0:0:50:1800:-162.278,-15.0515,0	0/1:191:106,85:106:3787:85:3031:-215.486,0,-283.532	0/1:60:36,24:36:1296:24:852:-58.9231,0,-98.8821	0/1:26:9,17:9:320:17:595:-45.9881,0,-21.3156	1/1:175:0,175:0:0:175:6239:-561.599,-52.6803,0	1/1:122:0,122:0:0:122:4345:-391.207,-36.7257,0	1/1:31:0,30:0:0:30:1076:-96.7931,-9.0309,0	0/1:128:56,72:56:1958:72:2592:-194.989,0,-137.957	0/1:48:26,22:26:932:22:784:-56.4206,0,-69.7494	1/1:108:0,108:0:0:108:3863:-347.851,-32.5112,0	0/1:6:2,4:2:72:4:144:-11.5027,0,-5.03054	1/1:10:0,10:0:0:10:352:-32.0169,-3.0103,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:158:77,81:77:2733:81:2912:-214.733,0,-198.649	1/1:108:0,108:0:0:108:3848:-346.499,-32.5112,0	1/1:55:0,55:0:0:55:1961:-176.725,-16.5567,0	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:43:0,43:0:0:43:1544:-139.233,-12.9443,0	0/1:91:30,61:30:1076:61:2176:-168.704,0,-69.7591	0/1:66:30,36:30:1063:36:1284:-95.9884,0,-76.1128	0/1:40:20,20:20:712:20:707:-51.9088,0,-52.3655	0/1:65:31,34:31:1107:34:1200:-88.7368,0,-80.3732	0/1:50:19,31:19:680:31:1104:-84.5911,0,-46.4777	1/1:81:0,81:0:0:81:2891:-260.423,-24.3834,0	1/1:59:0,59:0:0:59:2120:-191.058,-17.7608,0	0/1:47:26,21:26:936:21:756:-54.2188,0,-70.4111	0/1:85:22,63:22:788:63:2239:-176.182,0,-45.6572	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:84:0,84:0:0:84:3004:-270.558,-25.2865,0	1/1:27:1,26:1:36:26:936:-80.9575,-4.52954,0	0/1:15:7,8:7:237:8:288:-21.7437,0,-17.1436	0/1:63:33,30:33:1180:30:1076:-78.188,0,-87.5432	1/1:72:1,71:1:36:71:2533:-224.524,-18.0759,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:30:10,20:10:352:20:705:-54.7364,0,-22.9873	1/1:132:0,132:0:0:132:4708:-423.824,-39.736,0	0/1:9:6,3:6:207:3:108:-7.3659,0,-16.2576	1/1:85:0,85:0:0:85:3060:-275.602,-25.5876,0	1/1:164:0,164:0:0:164:5845:-526.063,-49.3689,0	1/1:37:0,37:0:0:37:1313:-118.464,-11.1381,0	1/1:40:1,39:1:36:39:1400:-122.7,-8.44293,0	1/1:128:3,125:3:95:125:4472:-393.775,-29.6676,0	1/1:46:1,45:1:36:45:1607:-141.314,-10.2491,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:66:0,66:0:0:66:2372:-213.737,-19.868,0	0/1:18:7,11:7:243:11:388:-29.8365,0,-16.7889	1/1:82:0,82:0:0:82:2923:-263.279,-24.6845,0	0/1:40:23,17:23:815:17:603:-42.5583,0,-61.6296	0/1:248:125,123:125:4446:123:4402:-320.694,0,-325.657	1/1:76:0,76:0:0:76:2688:-242.154,-22.8783,0	1/1:67:0,67:0:0:67:2394:-215.703,-20.169,0	1/1:32:0,32:0:0:32:1139:-102.817,-9.63296,0	0/1:18:15,3:15:524:3:108:-4.65663,0,-42.0711	1/1:35:0,35:0:0:35:1256:-113.344,-10.5361,0	1/1:48:0,48:0:0:48:1694:-152.714,-14.4494,0	1/1:65:1,64:1:36:64:2279:-201.771,-15.9687,0	1/1:98:0,97:0:0:97:3459:-311.125,-29.1999,0	1/1:37:1,36:1:36:36:1279:-111.794,-7.53984,0	0/1:53:21,32:21:752:32:1140:-86.8936,0,-52.0517	1/1:125:0,125:0:0:125:4467:-402.178,-37.6288,0	0/1:33:14,19:14:495:19:684:-51.9481,0,-34.949	1/1:80:1,79:1:36:79:2824:-250.778,-20.4841,0	1/1:51:0,51:0:0:51:1828:-164.784,-15.3525,0	1/1:64:0,64:0:0:64:2299:-207.158,-19.2659,0	0/1:108:36,72:36:1288:72:2575:-199.444,0,-83.7054	0/1:52:32,20:32:1144:20:720:-49.4752,0,-87.616	1/1:59:0,59:0:0:59:2103:-189.533,-17.7608,0	1/1:76:0,76:0:0:76:2727:-245.659,-22.8783,0
chr06	4490630	.	C	T	139969	PASS	AB=0.444035;ABP=99.016;AC=144;AF=0.765957;AN=188;AO=6537;CIGAR=1X;DP=8513;DPB=8513;DPRA=0;EPP=14197.9;EPPR=4289.5;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.993;MQMR=60;NS=94;NUMALT=1;ODDS=0.640069;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233802;QR=70660;RO=1974;RPL=6537;RPP=14197.9;RPPR=4289.5;RPR=0;RUN=1;SAF=0;SAP=14197.9;SAR=6537;SRF=0;SRP=4289.5;SRR=1974;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:12,9:12:432:9:320:-22.7911,0,-32.8996	1/1:155:1,154:1:36:154:5517:-493.055,-43.0614,0	0/1:137:79,58:79:2805:58:2076:-145.869,0,-211.448	1/1:154:0,154:0:0:154:5536:-498.362,-46.3586,0	0/1:37:18,19:18:644:19:680:-50.3911,0,-47.1525	0/1:43:27,16:27:957:16:553:-37.1497,0,-73.4996	1/1:107:0,107:0:0:107:3784:-340.755,-32.2102,0	0/1:177:112,65:112:4000:65:2332:-156.857,0,-306.908	0/1:100:64,35:64:2292:35:1237:-81.4707,0,-176.38	0/1:96:53,43:53:1900:43:1536:-109.634,0,-142.379	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	1/1:56:0,56:0:0:56:1990:-179.373,-16.8577,0	0/1:55:26,29:26:936:29:1036:-76.9973,0,-68.0028	0/1:41:23,18:23:824:18:644:-45.9484,0,-62.1411	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:37:14,23:14:504:23:821:-63.0733,0,-34.56	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:22:1,21:1:36:21:748:-64.047,-3.02439,0	1/1:222:0,222:0:0:222:7926:-713.364,-66.8287,0	0/1:111:58,53:58:2080:53:1871:-135.252,0,-154.056	1/1:131:0,131:0:0:131:4703:-423.428,-39.4349,0	0/1:77:36,41:36:1288:41:1472:-109.597,0,-93.0443	0/1:128:62,66:62:2232:66:2376:-175.566,0,-162.612	0/1:115:59,56:59:2124:56:1985:-144.304,0,-156.81	1/1:278:1,277:1:36:277:9881:-885.629,-80.0881,0	1/1:207:0,207:0:0:207:7406:-666.583,-62.3132,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:386:224,161:224:8010:161:5782:-404.236,0,-604.662	0/1:271:134,137:134:4801:137:4896:-359.212,0,-350.664	1/1:101:0,101:0:0:101:3616:-325.645,-30.404,0	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:154:93,61:93:3330:61:2184:-150.439,0,-253.558	1/1:163:0,163:0:0:163:5833:-525.081,-49.0679,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:222:0,222:0:0:222:7943:-714.892,-66.8287,0	1/1:35:0,35:0:0:35:1245:-112.353,-10.5361,0	0/1:174:111,63:111:3968:63:2238:-149.301,0,-304.932	0/1:52:24,28:24:860:28:1008:-75.3828,0,-62.0683	0/1:39:18,21:18:648:21:756:-56.6271,0,-46.9117	0/1:125:69,56:69:2457:56:2012:-143.724,0,-183.754	0/1:91:57,34:57:2044:34:1220:-82.7131,0,-156.838	1/1:210:2,208:2:72:208:7432:-662.087,-56.3796,0	1/1:125:0,125:0:0:125:4473:-402.737,-37.6288,0	0/1:144:101,43:101:3617:43:1533:-94.9128,0,-282.385	0/1:157:73,84:73:2624:84:3010:-223.869,0,-189.145	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:178:0,178:0:0:178:6323:-569.16,-53.5833,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:21:5,16:5:180:16:576:-45.8534,0,-10.2304	0/1:95:57,38:57:2036:38:1344:-92.6604,0,-154.914	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	0/1:21:10,11:10:356:11:392:-29.2984,0,-26.0596	0/1:65:40,25:40:1436:25:896:-61.3934,0,-109.971	1/1:71:1,70:1:36:70:2516:-223.093,-17.7749,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:177:0,177:0:0:177:6296:-566.73,-53.2823,0	1/1:187:4,183:4:140:183:6548:-576.455,-43.348,0	1/1:118:0,118:0:0:118:4224:-380.338,-35.5215,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:182:0,182:0:0:182:6540:-588.679,-54.7875,0	1/1:82:2,80:2:72:80:2872:-251.88,-17.8477,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:115:0,115:0:0:115:4108:-369.903,-34.6185,0	1/1:44:0,44:0:0:44:1572:-141.771,-13.2453,0	0/1:27:7,20:7:252:20:716:-56.6399,0,-14.9011	1/1:147:0,147:0:0:147:5257:-473.265,-44.2514,0	0/1:95:54,41:54:1927:41:1453:-102.466,0,-145.108	0/1:117:63,54:63:2256:54:1925:-138.304,0,-168.082	1/1:118:0,118:0:0:118:4238:-381.598,-35.5215,0	1/1:98:0,98:0:0:98:3516:-316.649,-29.5009,0	1/1:101:1,100:1:36:100:3596:-320.247,-26.8058,0	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	1/1:190:0,190:0:0:190:6782:-610.446,-57.1957,0	1/1:132:0,132:0:0:132:4699:-423.07,-39.736,0	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:63:27,36:27:968:36:1288:-97.2581,0,-68.4725	1/1:74:0,74:0:0:74:2637:-237.576,-22.2762,0	0/1:29:13,16:13:468:16:572:-43.0836,0,-33.7298	1/1:56:0,56:0:0:56:2005:-180.722,-16.8577,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:34:1,33:1:36:33:1188:-103.63,-6.63675,0	0/1:60:28,32:28:996:32:1144:-85.2077,0,-71.8931	0/1:60:46,14:46:1648:14:504:-27.6363,0,-130.547	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0
chr06	4499751	.	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chr06	4514436	.	A	G	30339.7	PASS	AB=0.483412;ABP=12.0873;AC=44;AF=0.234043;AN=188;AO=1846;CIGAR=1X;DP=8683;DPB=8683;DPRA=1.08041;EPP=4011.55;EPPR=14821.1;GTI=2;LEN=1;MEANALT=1.16981;MQM=59.9724;MQMR=59.9664;NS=94;NUMALT=1;ODDS=3.53977;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65812;QR=244602;RO=6824;RPL=0;RPP=4011.55;RPPR=14821.1;RPR=1846;RUN=1;SAF=1846;SAP=4011.55;SAR=0;SRF=6824;SRP=14821.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:30,51:30:1080:51:1801:-137.987,0,-73.1298	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:104:46,58:46:1656:58:2064:-153.947,0,-118.021	0/0:225:225,0:225:8061:0:0:0,-67.7317,-725.467	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:45:26,19:26:932:19:661:-46.2653,0,-70.6525	0/0:59:58,1:58:2076:1:36:0,-14.1625,-183.51	0/1:252:146,106:146:5252:106:3754:-262.2,0,-396.954	0/1:179:103,72:103:3700:72:2572:-178.699,0,-280.171	0/1:99:62,37:62:2217:37:1332:-90.3804,0,-169.905	0/1:49:22,27:22:792:27:972:-73.0474,0,-56.8552	0/0:114:114,0:114:4092:0:0:0,-34.3174,-368.429	0/1:90:56,34:56:2012:34:1212:-82.2936,0,-154.259	0/1:73:39,34:39:1400:34:1224:-88.4919,0,-104.279	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.199	0/1:63:27,36:27:953:36:1284:-96.8985,0,-67.1184	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:161:161,0:161:5765:0:0:0,-48.4658,-518.963	0/1:487:252,235:252:8999:235:8413:-610.567,0,-663.277	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.135	0/1:117:61,56:61:2181:56:2004:-145.413,0,-161.334	0/1:46:29,17:29:1040:17:593:-39.8473,0,-80.067	0/1:54:25,29:25:900:29:1029:-76.6655,0,-65.0547	0/0:231:231,0:231:8284:0:0:0,-69.5379,-745.566	0/0:196:196,0:196:7017:0:0:0,-59.0019,-631.589	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:184:103,81:103:3688:81:2904:-206.206,0,-276.733	0/1:82:39,43:39:1400:43:1540:-114.209,0,-101.615	0/0:131:131,0:131:4673:0:0:0,-39.4349,-420.731	0/1:10:2,8:2:68:8:284:-22.8931,0,-3.44741	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:150:94,56:94:3372:56:1989:-134.128,0,-258.541	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.921	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:86:85,0:85:3044:0:0:0,-25.5875,-273.812	0/0:33:32,0:32:1144:0:0:0,-9.63296,-102.948	0/1:207:110,96:110:3918:96:3424:-246,0,-290.438	0/1:71:35,36:35:1248:36:1292:-95.2106,0,-91.2517	0/1:63:42,21:42:1512:21:756:-49.4023,0,-117.407	0/1:125:68,57:68:2428:57:2029:-145.252,0,-181.147	0/1:107:48,58:48:1728:58:2080:-155.232,0,-123.574	0/0:178:177,1:177:6330:1:36:0,-49.9851,-566.188	0/0:71:70,1:70:2508:1:36:0,-17.7749,-222.374	0/1:97:46,51:46:1656:51:1832:-135.961,0,-120.126	0/1:66:37,28:37:1324:28:1008:-71.1096,0,-99.5354	0/1:8:5,3:5:165:3:108:-7.66693,0,-12.7654	0/0:68:66,2:66:2364:2:68:0,-14.0123,-206.561	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:95:48,47:48:1728:47:1676:-122.529,0,-127.207	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:11:3,8:3:104:8:288:-22.9561,0,-6.39148	0/1:9:5,4:5:176:4:140:-10.2353,0,-13.4757	0/1:79:42,37:42:1500:37:1320:-95.3206,0,-111.505	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.217	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3353	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.657	0/0:137:137,0:137:4916:0:0:0,-41.2411,-442.545	0/0:77:77,0:77:2753:0:0:0,-23.1793,-248.009	0/0:98:98,0:98:3497:0:0:0,-29.5009,-314.94	0/0:274:273,1:273:9793:1:36:0,-78.8839,-877.713	0/0:135:134,1:134:4805:1:36:0,-37.0408,-429.002	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.5	0/1:35:8,27:8:273:27:945:-74.8262,0,-14.3641	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:82:34,48:34:1212:48:1704:-128.961,0,-84.7019	0/1:229:95,133:95:3408:133:4677:-352.096,0,-237.939	0/0:151:149,1:149:5360:1:36:0,-41.9161,-478.929	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.799	0/0:122:122,0:122:4368:0:0:0,-36.7257,-393.294	0/1:39:17,21:17:608:21:756:-56.5683,0,-43.2532	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.444	0/0:253:251,1:251:9012:1:36:0,-72.6211,-807.323	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/1:84:47,37:47:1684:37:1324:-94.1756,0,-126.56	0/0:136:136,0:136:4892:0:0:0,-40.9401,-440.429	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/0:73:72,1:72:2588:1:36:0,-18.3769,-229.57	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:80:41,39:41:1472:39:1388:-101.137,0,-108.694	0/1:69:21,48:21:756:48:1709:-133.323,0,-47.5938	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109
chr06	4514469	.	C	T	377110	PASS	AB=0.504689;ABP=4.41554;AC=144;AF=0.765957;AN=188;AO=13764;CIGAR=1X;DP=17445;DPB=17445;DPRA=0;EPP=29787;EPPR=7935.46;GTI=1;LEN=1;MEANALT=1.08511;MQM=59.9488;MQMR=59.976;NS=94;NUMALT=1;ODDS=0.768051;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=491217;QR=131123;RO=3673;RPL=6723;RPP=18.9641;RPPR=13.468;RPR=7041;RUN=1;SAF=6735;SAP=16.6468;SAR=7029;SRF=1908;SRP=15.0997;SRR=1765;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:138:87,51:87:3089:51:1824:-122.899,0,-236.695	1/1:178:0,178:0:0:178:6358:-572.311,-53.5833,0	0/1:260:131,129:131:4658:129:4614:-337.155,0,-340.34	1/1:482:2,479:2:68:479:17071:-1529.57,-138.664,0	0/1:58:29,29:29:1036:29:1036:-76.0942,0,-76.0942	0/1:94:48,46:48:1663:46:1648:-120.303,0,-121.654	1/1:142:1,141:1:36:141:5038:-449.966,-39.148,0	0/1:375:164,211:164:5859:211:7548:-566.463,0,-414.536	0/1:283:130,153:130:4626:153:5478:-407.955,0,-331.313	0/1:174:79,95:79:2840:95:3400:-253.799,0,-203.458	0/1:120:65,55:65:2336:55:1949:-139.558,0,-174.376	1/1:208:0,207:0:0:207:7423:-667.753,-62.3132,0	0/1:175:75,100:75:2680:100:3587:-270.355,0,-188.765	0/1:166:88,78:88:3138:78:2787:-200.657,0,-232.674	1/1:197:0,197:0:0:197:7029:-632.67,-59.3029,0	0/1:149:77,72:77:2760:72:2567:-186.426,0,-203.788	1/1:77:1,76:1:36:76:2695:-239.194,-19.581,0	1/1:101:0,101:0:0:101:3621:-326.095,-30.404,0	1/1:59:0,59:0:0:59:2098:-189.089,-17.7608,0	1/1:432:2,430:2:72:430:15289:-1368.89,-123.208,0	0/1:661:329,332:329:11748:332:11831:-865.664,0,-858.201	1/1:138:0,138:0:0:138:4937:-444.477,-41.5421,0	0/1:265:128,136:128:4547:136:4833:-355.292,0,-329.565	0/1:106:47,59:47:1680:59:2106:-157.77,0,-119.578	0/1:131:74,57:74:2619:57:2040:-144.437,0,-195.667	1/1:439:4,435:4:144:435:15527:-1383.82,-118.839,0	1/1:366:0,366:0:0:366:13054:-1174.43,-110.177,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	0/1:404:216,188:216:7716:188:6681:-479.752,0,-572.857	0/1:201:86,114:86:3081:114:4076:-306.457,0,-216.95	1/1:250:3,247:3:108:247:8791:-781.1,-65.1823,0	0/1:17:10,7:10:360:7:248:-17.5467,0,-27.6268	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	1/1:32:0,31:0:0:31:1088:-98.0122,-9.33193,0	0/1:325:155,170:155:5535:170:6080:-449.465,0,-400.441	1/1:175:0,175:0:0:175:6232:-560.975,-52.6803,0	1/1:104:0,104:0:0:104:3729:-335.808,-31.3071,0	0/1:13:3,10:3:108:10:345:-27.4674,0,-6.16178	1/1:178:0,178:0:0:178:6337:-569.351,-53.5833,0	1/1:61:0,61:0:0:61:2165:-195.115,-18.3628,0	0/1:454:221,232:221:7920:232:8287:-609.112,0,-576.092	0/1:141:66,75:66:2354:75:2678:-198.819,0,-169.672	0/1:124:53,71:53:1887:71:2533:-190.891,0,-132.78	0/1:214:95,118:95:3381:118:4201:-313.938,0,-240.174	0/1:205:105,100:105:3756:100:3548:-257.498,0,-276.521	1/1:376:1,375:1:36:375:13327:-1195.59,-109.589,0	1/1:162:1,161:1:36:161:5751:-513.876,-45.1686,0	0/1:186:88,98:88:3149:98:3493:-258.586,0,-227.642	0/1:185:96,89:96:3431:89:3169:-229.742,0,-253.313	0/1:16:10,6:10:347:6:215:-14.8827,0,-26.7471	1/1:159:2,157:2:72:157:5583:-495.758,-41.027,0	1/1:132:0,132:0:0:132:4727:-425.581,-39.736,0	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:225:96,129:96:3412:129:4598:-346.251,0,-239.562	1/1:94:0,94:0:0:94:3348:-301.536,-28.2968,0	0/1:24:14,10:14:495:10:351:-24.702,0,-37.6583	0/1:18:11,7:11:392:7:248:-17.2457,0,-30.2015	0/1:182:96,86:96:3436:86:3022:-217.421,0,-254.666	1/1:192:0,192:0:0:192:6874:-618.725,-57.7978,0	0/1:36:16,20:16:568:20:701:-52.5747,0,-40.6148	1/1:251:0,251:0:0:251:8967:-807.002,-75.5585,0	1/1:294:2,292:2:72:292:10448:-933.344,-81.6661,0	1/1:168:1,167:1:36:167:5955:-532.456,-46.9748,0	1/1:185:0,185:0:0:185:6577:-592.014,-55.6906,0	1/1:502:3,499:3:108:499:17820:-1593.33,-141.042,0	1/1:287:2,285:2:72:285:10184:-909.651,-79.5589,0	1/1:98:0,98:0:0:98:3498:-315.026,-29.5009,0	1/1:115:0,114:0:0:114:4081:-367.108,-34.3174,0	1/1:90:0,90:0:0:90:3214:-289.482,-27.0927,0	0/1:59:40,19:40:1440:19:684:-44.1296,0,-112.137	1/1:144:0,144:0:0:144:5135:-462.288,-43.3483,0	0/1:162:74,88:74:2639:88:3122:-232.427,0,-188.99	0/1:395:213,182:213:7648:182:6498:-465.996,0,-569.446	1/1:301:1,300:1:36:300:10747:-963.519,-87.0118,0	1/1:224:0,224:0:0:224:8004:-720.38,-67.4307,0	1/1:220:3,217:3:108:217:7784:-690.323,-56.1514,0	0/1:62:32,30:32:1148:30:1072:-78.1286,0,-84.966	1/1:205:1,204:1:32:204:7278:-651.872,-58.5118,0	1/1:278:1,277:1:36:277:9905:-887.777,-80.0881,0	1/1:478:2,476:2:72:476:16964:-1519.33,-137.056,0	1/1:108:0,108:0:0:108:3852:-346.872,-32.5112,0	1/1:205:0,205:0:0:205:7319:-658.759,-61.7112,0	0/1:147:61,86:61:2159:86:3055:-230.929,0,-150.323	1/1:281:0,281:0:0:281:10023:-902.007,-84.5894,0	0/1:48:23,25:23:828:25:900:-66.8716,0,-60.3947	1/1:137:0,137:0:0:137:4924:-443.308,-41.2411,0	1/1:137:0,137:0:0:137:4914:-442.41,-41.2411,0	1/1:132:0,132:0:0:132:4716:-424.601,-39.736,0	0/1:180:90,90:90:3215:90:3217:-235.566,0,-235.387	0/1:141:99,42:99:3547:42:1508:-93.567,0,-276.992	1/1:185:0,185:0:0:185:6615:-595.43,-55.6906,0	1/1:248:0,248:0:0:248:8871:-798.369,-74.6554,0
chr06	4514496	.	C	T	398117	PASS	AB=0.508465;ABP=7.53228;AC=144;AF=0.765957;AN=188;AO=13624;CIGAR=1X;DP=17240;DPB=17240;DPRA=0;EPP=5588.91;EPPR=3033.83;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.9513;MQMR=59.9898;NS=94;NUMALT=1;ODDS=0.436421;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=485247;QR=127418;RO=3611;RPL=10417;RPP=8288.54;RPPR=1276.08;RPR=3207;RUN=1;SAF=6565;SAP=41.9062;SAR=7059;SRF=1850;SRP=7.77359;SRR=1761;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:133:81,52:81:2866:52:1856:-127.283,0,-218.141	1/1:179:3,176:3:108:176:6276:-554.86,-43.8092,0	0/1:257:126,131:126:4438:131:4666:-342.738,0,-322.228	1/1:478:1,477:1:36:477:17028:-1528.48,-140.294,0	0/1:56:29,27:29:1032:27:972:-70.9402,0,-76.3358	0/1:88:46,42:46:1631:42:1499:-108.713,0,-120.587	1/1:140:1,139:1:36:139:4947:-441.782,-38.5459,0	0/1:370:160,210:160:5635:210:7480:-561.852,0,-395.895	0/1:284:127,157:127:4466:157:5588:-417.551,0,-316.622	0/1:172:78,94:78:2776:94:3352:-250.035,0,-198.305	0/1:118:63,55:63:2247:55:1957:-140.879,0,-166.971	1/1:216:0,216:0:0:216:7679:-691.146,-65.0225,0	0/1:176:74,102:74:2613:102:3632:-274.102,0,-182.434	0/1:163:87,76:87:3053:76:2694:-193.494,0,-225.929	1/1:197:0,197:0:0:197:7057:-635.188,-59.3029,0	0/1:142:74,68:74:2605:68:2420:-175.309,0,-191.95	1/1:75:0,75:0:0:75:2655:-239.194,-22.5773,0	1/1:101:0,101:0:0:101:3602:-324.386,-30.404,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:436:1,435:1:36:435:15513:-1392.28,-127.651,0	0/1:648:319,328:319:11185:328:11606:-849.286,0,-811.43	1/1:142:0,142:0:0:142:5024:-452.305,-42.7463,0	0/1:262:124,138:124:4392:138:4936:-365.52,0,-316.586	0/1:105:47,58:47:1653:58:2044:-152.565,0,-117.448	0/1:129:72,57:72:2514:57:2040:-145.029,0,-186.489	1/1:438:4,433:4:144:433:15435:-1375.55,-118.596,0	1/1:358:0,358:0:0:358:12745:-1146.71,-107.769,0	1/1:59:0,58:0:0:58:2084:-187.47,-17.4597,0	0/1:406:215,190:215:7642:190:6773:-487.366,0,-565.543	0/1:205:89,116:89:3155:116:4143:-311.338,0,-222.466	1/1:252:3,249:3:104:249:8827:-784.716,-66.1568,0	0/1:17:10,7:10:343:7:250:-17.7292,0,-26.0831	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:12:9,3:9:309:3:108:-6.46281,0,-24.5284	0/1:11:3,8:3:108:8:280:-22.228,0,-6.76384	1/1:29:0,29:0:0:29:1025:-92.5431,-8.72987,0	0/1:328:158,169:158:5549:169:6051:-445.895,0,-400.744	1/1:173:3,170:3:108:170:6029:-532.644,-42.003,0	1/1:102:2,100:2:64:100:3584:-316.688,-24.6264,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:168:0,168:0:0:168:5990:-539.011,-50.573,0	1/1:61:1,60:1:36:60:2138:-189.088,-14.7646,0	0/1:450:217,233:217:7695:233:8289:-610.557,0,-557.128	0/1:143:66,77:66:2347:77:2745:-204.245,0,-168.442	0/1:126:53,73:53:1880:73:2565:-193.165,0,-131.546	0/1:210:93,117:93:3297:117:4162:-311.548,0,-233.733	0/1:193:99,94:99:3487:94:3342:-242.887,0,-255.944	1/1:367:1,366:1:36:366:13057:-1171.33,-106.88,0	1/1:165:1,164:1:36:164:5852:-523.189,-46.0717,0	0/1:180:85,95:85:2985:95:3388:-250.949,0,-214.696	0/1:182:94,88:94:3338:88:3140:-228.038,0,-245.851	0/1:15:9,6:9:315:6:212:-14.9093,0,-24.1718	1/1:155:2,153:2:72:153:5492:-487.568,-39.8229,0	1/1:131:1,130:1:36:130:4638:-413.985,-35.8367,0	0/1:12:8,4:8:273:4:140:-9.33222,0,-21.2878	0/1:217:93,124:93:3310:124:4431:-333.637,0,-232.795	1/1:93:2,91:2:72:91:3248:-285.705,-21.1591,0	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/1:18:11,7:11:388:7:248:-17.2457,0,-29.8388	0/1:180:95,85:95:3375:85:3025:-218.288,0,-249.782	1/1:185:0,185:0:0:185:6598:-593.897,-55.6906,0	0/1:37:17,20:17:600:20:720:-53.9883,0,-43.1911	1/1:256:0,256:0:0:256:9039:-813.437,-77.0637,0	1/1:298:2,296:2:72:296:10544:-942.018,-82.8702,0	1/1:165:1,164:1:36:164:5839:-522.016,-46.0717,0	1/1:182:0,182:0:0:182:6471:-582.477,-54.7875,0	1/1:505:2,503:2:72:503:17911:-1604.65,-145.183,0	1/1:287:2,285:2:72:285:10149:-906.506,-79.5589,0	1/1:98:1,97:1:36:97:3434:-305.675,-25.9027,0	1/1:113:0,113:0:0:113:4017:-361.72,-34.0164,0	1/1:88:0,88:0:0:88:3133:-282.197,-26.4906,0	0/1:56:39,17:39:1359:17:608:-38.1943,0,-105.747	1/1:141:0,141:0:0:141:5022:-452.125,-42.4452,0	0/1:161:72,89:72:2498:89:3152:-235.438,0,-176.604	0/1:402:213,189:213:7493:189:6731:-484.854,0,-553.407	1/1:296:0,296:0:0:296:10548:-949.235,-89.1049,0	1/1:222:1,221:1:36:221:7887:-706.259,-63.2304,0	1/1:220:3,217:3:108:217:7735:-686.09,-56.1514,0	0/1:59:30,29:30:1072:29:1031:-75.3419,0,-79.0317	1/1:207:0,207:0:0:207:7364:-662.812,-62.3132,0	1/1:271:2,269:2:72:269:9604:-857.476,-74.7424,0	1/1:468:1,467:1:36:467:16578:-1487.99,-137.284,0	1/1:109:1,108:1:27:108:3855:-344.437,-30.1125,0	1/1:201:0,201:0:0:201:7183:-646.526,-60.507,0	0/1:147:60,87:60:2122:87:3075:-232.727,0,-146.996	1/1:278:0,278:0:0:278:9952:-895.615,-83.6863,0	0/1:48:24,24:24:836:24:856:-62.9117,0,-61.1053	1/1:136:1,135:1:32:135:4767:-425.99,-37.7408,0	1/1:134:0,134:0:0:134:4780:-430.358,-40.338,0	1/1:125:0,125:0:0:125:4462:-401.75,-37.6288,0	0/1:173:88,85:88:3068:85:3036:-221.392,0,-224.272	0/1:138:95,43:95:3369:43:1532:-96.6286,0,-261.885	1/1:156:0,156:0:0:156:5555:-500.074,-46.9607,0	1/1:243:0,243:0:0:243:8672:-780.474,-73.1503,0
chr06	4635728	.	TGATGGG	TGACGGG,CGACGGT,TGACAGT	58739	PASS	AB=0.399328,0.418908,0.3332;ABP=422.297,274.893,607.886;AC=90,70,28;AF=0.478723,0.37234,0.148936;AN=188;AO=1922,2000,834;CIGAR=3M1X3M,1X2M1X2M1X,3M2X1M1X;DP=4790;DPB=4789.86;DPRA=7.34716,5.23846,5.67574;EPP=4124.63,4337.27,1814.02;EPPR=5.18177;GTI=6;LEN=1,7,7;MEANALT=2.83871,2.87912,3.16327;MQM=56.4532,25.0015,25;MQMR=60;NS=94;NUMALT=3;ODDS=0.134881;PAIRED=0,0,0;PAIREDR=0;PAO=0,0,0;PQA=0,0,0;PQR=0;PRO=0;QA=67762,68812,29110;QR=35;RO=1;RPL=6,1,0;RPP=4124.63,4337.27,1814.02;RPPR=5.18177;RPR=1916,1999,834;RUN=1,1,1;SAF=0,0,0;SAP=4176.58,4345.96,1814.02;SAR=1922,2000,834;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex,complex	GT:DP:AD:RO:QR:AO:QA:GL	2/3:20:0,3,7,10:0:0:3,7,10:104,250,347:-32.3677,-24.0317,-23.1286,-18.9554,-10.6115,-16.8482,-13.3529,-5.00276,0,-10.3426	1/2:86:0,38,46,0:0:0:38,46,0:1356,1590,0:-197.929,-87.5746,-76.1354,-110.345,0,-96.4972,-197.929,-87.5746,-110.345,-197.929	1/2:92:0,25,67,0:0:0:25,67,0:896,2326,0:-200.879,-127.811,-120.285,-73.3951,0,-53.2261,-200.879,-127.811,-73.3951,-200.879	1/3:107:0,58,20,29:0:0:58,20,29:2053,706,1030:-222.554,-55.5069,-38.0472,-184.321,-17.2605,-178.301,-167.069,0,-128.85,-158.339	1/2:34:0,13,11,10:0:0:13,11,10:468,383,345:-59.0751,-20.993,-17.0796,-38.1035,0,-34.7922,-40.1773,-2.07746,-19.2371,-37.167	1/3:41:0,15,9,17:0:0:15,9,17:536,305,599:-76.2067,-32.4866,-27.9711,-59.1332,-15.4017,-56.4239,-43.7497,0,-26.7066,-38.6322	1/3:75:0,29,8,38:0:0:29,8,38:1028,266,1308:-155.492,-72.0018,-63.2719,-140.412,-56.916,-138.003,-83.5347,0,-68.4725,-72.0955	1/2:53:0,15,37,0:0:0:15,37,0:532,1291,0:-113.928,-70.5759,-66.0605,-43.3601,0,-32.222,-113.928,-70.5759,-43.3601,-113.928	2/3:43:0,4,16,23:0:0:4,16,23:144,545,803:-73.8551,-62.1008,-60.8967,-43.7182,-31.9577,-38.9017,-30.0506,-18.2837,0,-23.1269	1/3:78:0,28,23,26:0:0:28,23,26:980,780,918:-129.166,-49.7059,-41.2771,-85.6538,-6.17953,-78.7301,-79.4781,0,-35.9953,-71.6513	1/2:52:0,30,22,0:0:0:30,22,0:1035,764,0:-126.261,-42.1637,-33.1328,-84.385,0,-77.7624,-126.261,-42.1637,-84.385,-126.261	1/3:42:0,13,10,18:0:0:13,10,18:453,340,640:-71.2808,-34.4325,-30.5191,-52.3183,-15.4613,-49.308,-36.8689,0,-17.9385,-31.4504	1/2:27:0,12,15,0:0:0:12,15,0:432,517,0:-64.0883,-28.8098,-25.1975,-35.5871,0,-31.0717,-64.0883,-28.8098,-35.5871,-64.0883	1/2:41:0,13,26,0:0:0:13,26,0:421,872,0:-82.9863,-49.0331,-45.1197,-33.9111,0,-26.0843,-82.9863,-49.0331,-33.9111,-82.9863	1/2:30:0,15,14,0:0:0:15,14,0:531,475,0:-69.6877,-26.46,-21.9446,-43.1838,0,-38.9694,-69.6877,-26.46,-43.1838,-69.6877	1/3:29:0,16,4,9:0:0:16,4,9:511,138,303:-57.9762,-16.7868,-11.9703,-50.3633,-9.16625,-49.1592,-41.2061,0,-33.6018,-38.4969	1/2:53:0,29,24,0:0:0:29,24,0:1022,829,0:-129.065,-45.845,-37.1152,-83.5132,0,-76.2885,-129.065,-45.845,-83.5132,-129.065	1/2:38:0,15,22,1:0:0:15,22,1:527,754,35:-84.7554,-41.8427,-37.3273,-42.9693,0,-36.3466,-82.8446,-39.9309,-41.064,-82.5436	1/3:36:0,21,3,12:0:0:21,3,12:743,101,409:-83.011,-22.5146,-16.193,-77.3241,-16.8215,-76.421,-60.5271,0,-54.8481,-56.9147	1/3:70:0,37,8,25:0:0:37,8,25:1316,280,872:-154.55,-47.4247,-36.2866,-139.285,-32.1522,-136.877,-107.157,0,-91.9043,-99.6313	1/3:86:0,51,9,25:0:0:51,9,25:1819,302,849:-195.62,-47.3484,-31.9959,-178.65,-30.3712,-175.941,-148.299,0,-131.338,-140.773	1/2:49:0,10,39,0:0:0:10,39,0:356,1316,0:-102.88,-73.8551,-70.8448,-29.3579,0,-17.6177,-102.88,-73.8551,-29.3579,-102.88	2/2:7:0,0,6,0:0:0:0,6,0:0,215,0:-13.3138,-13.3138,-13.3138,-1.80618,-1.80618,0,-13.3138,-13.3138,-1.80618,-13.3138	1/2:45:0,11,33,1:0:0:11,33,1:392,1116,21:-94.114,-62.2777,-58.9663,-31.9546,0,-22.0206,-92.6568,-60.8202,-30.509,-92.3558	1/3:29:0,15,2,12:0:0:15,2,12:532,72,422:-66.2976,-22.9226,-18.4072,-62.4633,-19.0841,-61.8612,-43.4138,0,-39.5881,-39.8015	1/2:133:0,62,70,0:0:0:62,70,0:2204,2409,0:-312.466,-133.075,-114.411,-179.35,0,-158.278,-312.466,-133.075,-179.35,-312.466	2/3:85:0,16,31,37:0:0:16,31,37:567,1076,1281:-129.025,-82.8417,-78.0253,-69.9322,-23.737,-60.6003,-59.0353,-12.8368,0,-47.8972	1/3:22:0,9,4,9:0:0:9,4,9:324,134,317:-43.6749,-17.2052,-14.4959,-36.1012,-9.62142,-34.8971,-26.5029,0,-18.9541,-23.7936	1/2:102:0,39,63,0:0:0:39,63,0:1384,2202,0:-233.138,-120.516,-108.776,-112.935,0,-93.97,-233.138,-120.516,-112.935,-233.138	1/2:58:0,17,21,20:0:0:17,21,20:603,716,680:-89.0002,-39.8651,-34.7476,-49.154,0,-42.8324,-51.3757,-2.22388,-11.5724,-45.3551	1/2:57:0,24,32,0:0:0:24,32,0:844,1078,0:-129.265,-60.55,-53.3253,-68.6985,0,-59.0655,-129.265,-60.55,-68.6985,-129.265	1/2:7:0,4,3,0:0:0:4,3,0:144,97,0:-17.5382,-5.85702,-4.6529,-11.9718,0,-11.0687,-17.5382,-5.85702,-11.9718,-17.5382	1/2:15:0,8,6,1:0:0:8,6,1:288,212,36:-35.0327,-11.4852,-9.07698,-23.5874,0,-21.7813,-33.1178,-9.56596,-21.6808,-32.8168	1/2:2:0,1,1,0:0:0:1,1,0:36,32,0:-5.11483,-2.12019,-1.81916,-3.29553,0,-2.9945,-5.11483,-2.12019,-3.29553,-5.11483	1/1:15:0,15,0,0:0:0:15,0,0:536,0,0:-48.5476,-4.51545,0,-48.5476,-4.51545,-48.5476,-48.5476,-4.51545,-48.5476,-48.5476	1/2:14:0,6,6,2:0:0:6,6,2:216,215,70:-29.1722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chr06	4842199	.	G	A	129343	PASS	AB=0.4964;ABP=3.33859;AC=147;AF=0.781915;AN=188;AO=6017;CIGAR=1X;DP=7505;DPB=7505;DPRA=80.6882;EPP=13068.8;EPPR=3225.48;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.7123;MQMR=59.9299;NS=94;NUMALT=1;ODDS=0.441764;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214810;QR=53152;RO=1484;RPL=0;RPP=13068.8;RPPR=3225.48;RPR=6017;RUN=1;SAF=6017;SAP=13068.8;SAR=0;SRF=1484;SRP=3225.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:22,14:22:784:14:500:-34.4991,0,-60.0468	1/1:116:0,116:0:0:116:4139:-372.666,-34.9195,0	0/1:74:42,31:42:1500:31:1082:-75.3337,0,-112.953	1/1:192:0,192:0:0:192:6845:-616.038,-57.7978,0	0/1:36:18,17:18:648:17:612:-44.3878,0,-47.7565	0/1:38:9,29:9:324:29:1036:-81.8795,0,-18.0667	1/1:106:0,106:0:0:106:3786:-340.923,-31.9092,0	0/1:110:46,64:46:1639:64:2266:-171.04,0,-114.685	0/1:104:44,60:44:1568:60:2130:-160.622,0,-110.051	0/1:100:39,61:39:1396:61:2155:-163.918,0,-95.8361	0/1:44:19,25:19:680:25:892:-67.3544,0,-48.2838	1/1:93:0,93:0:0:93:3323:-299.224,-27.9958,0	0/1:62:33,29:33:1180:29:1040:-75.2505,0,-87.8442	0/1:73:44,29:44:1560:29:1040:-71.9253,0,-118.714	1/1:78:0,78:0:0:78:2800:-252.234,-23.4803,0	0/1:52:29,23:29:1029:23:805:-57.1121,0,-77.2661	1/1:68:0,68:0:0:68:2429:-218.852,-20.47,0	1/1:64:0,64:0:0:64:2273:-204.798,-19.2659,0	1/1:22:0,22:0:0:22:788:-71.2284,-6.62266,0	1/1:131:0,131:0:0:131:4653:-418.921,-39.4349,0	0/1:108:44,64:44:1584:64:2292:-174.026,0,-110.34	1/1:82:0,82:0:0:82:2920:-263.034,-24.6845,0	0/1:66:40,26:40:1440:26:928:-63.9679,0,-110.03	0/1:95:46,49:46:1652:49:1752:-129.357,0,-120.371	0/1:58:35,23:35:1252:23:824:-57.0217,0,-95.5207	1/1:216:0,216:0:0:216:7726:-695.362,-65.0225,0	1/1:125:0,125:0:0:125:4443:-399.891,-37.6288,0	1/1:50:0,50:0:0:50:1788:-161.087,-15.0515,0	0/1:160:76,84:76:2728:84:3024:-224.212,0,-197.598	0/1:119:55,64:55:1956:64:2284:-169.995,0,-140.49	1/1:88:0,88:0:0:88:3126:-281.287,-26.4906,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:4:0,4:0:0:4:144:-13.3089,-1.20412,0	1/1:8:0,7:0:0:7:237:-21.3019,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:262:140,122:140:5036:122:4376:-315.14,0,-374.495	1/1:109:0,109:0:0:109:3912:-352.263,-32.8123,0	1/1:54:0,54:0:0:54:1940:-174.86,-16.2556,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:140:0,140:0:0:140:5020:-451.928,-42.1442,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:141:72,68:72:2580:68:2395:-173.299,0,-189.946	0/1:106:60,46:60:2160:46:1637:-115.701,0,-162.757	0/1:71:40,31:40:1436:31:1112:-79.0173,0,-108.165	0/1:92:39,53:39:1396:53:1900:-143.582,0,-98.2443	0/1:32:17,15:17:608:15:532:-38.5801,0,-45.4191	1/1:109:0,109:0:0:109:3900:-351.189,-32.8123,0	1/1:90:0,90:0:0:90:3203:-287.991,-27.0927,0	0/1:84:31,53:31:1116:53:1903:-146.164,0,-75.4476	0/1:144:64,80:64:2300:80:2861:-214.316,0,-163.912	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:71:0,71:0:0:71:2543:-228.947,-21.3731,0	1/1:29:0,29:0:0:29:1019:-92.0197,-8.72987,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:47:27,20:27:972:20:690:-48.2672,0,-73.3313	1/1:48:0,48:0:0:48:1720:-155.076,-14.4494,0	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:54:29,25:29:1044:25:851:-60.6413,0,-78.0192	1/1:133:0,133:0:0:133:4748:-427.463,-40.037,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:168:0,168:0:0:168:5979:-538.2,-50.573,0	1/1:197:2,195:2:68:195:6973:-621.151,-52.8452,0	1/1:54:0,54:0:0:54:1921:-173.151,-16.2556,0	1/1:28:0,28:0:0:28:993:-89.6732,-8.42884,0	1/1:153:9,144:9:324:144:5134:-432.415,-16.5517,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:19:0,19:0:0:19:684:-61.8775,-5.71957,0	1/1:82:1,81:1:36:81:2889:-256.622,-21.0862,0	1/1:91:0,91:0:0:91:3261:-293.701,-27.3937,0	0/1:18:5,13:5:180:13:453:-35.6811,0,-11.1335	1/1:77:0,77:0:0:77:2768:-249.314,-23.1793,0	0/1:52:34,18:34:1216:18:648:-42.9983,0,-94.093	0/1:110:61,49:61:2168:49:1741:-123.855,0,-162.274	1/1:176:0,176:0:0:176:6292:-566.338,-52.9813,0	1/1:47:0,47:0:0:47:1688:-152.193,-14.1484,0	1/1:88:0,88:0:0:88:3156:-284.226,-26.4906,0	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:96:0,96:0:0:96:3430:-308.886,-28.8989,0	1/1:77:0,77:0:0:77:2747:-247.447,-23.1793,0	1/1:149:0,149:0:0:149:5336:-480.357,-44.8535,0	1/1:108:0,108:0:0:108:3869:-348.395,-32.5112,0	1/1:58:0,58:0:0:58:2084:-187.825,-17.4597,0	0/1:129:69,60:69:2468:60:2156:-155.465,0,-183.539	1/1:194:0,194:0:0:194:6930:-623.743,-58.3998,0	0/1:49:30,19:30:1076:19:672:-46.0449,0,-82.4024	1/1:119:0,119:0:0:119:4230:-380.86,-35.8226,0	1/1:84:2,82:2:72:82:2940:-257.972,-18.4498,0	1/1:32:1,31:1:36:31:1116:-97.1488,-6.03469,0	0/1:62:26,36:26:936:36:1292:-97.9061,0,-65.8956	0/1:84:61,23:61:2180:23:826:-49.3758,0,-171.18	1/1:63:2,61:2:72:61:2154:-187.28,-12.1282,0	1/1:98:0,98:0:0:98:3516:-316.644,-29.5009,0
chr06	4842211	.	C	T	25256.5	PASS	AB=0.503573;ABP=3.33613;AC=39;AF=0.207447;AN=188;AO=1498;CIGAR=1X;DP=7535;DPB=7535;DPRA=1.07176;EPP=3221.23;EPPR=12986.5;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9019;MQMR=59.7254;NS=94;NUMALT=1;ODDS=2.76577;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53708;QR=215920;RO=6031;RPL=4;RPP=3221.23;RPPR=12986.5;RPR=1494;RUN=1;SAF=1498;SAP=3255.88;SAR=0;SRF=6031;SRP=13099.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:14,23:14:504:23:824:-63.3452,0,-34.56	0/0:114:114,0:114:4075:0:0:0,-34.3174,-366.904	0/1:75:31,44:31:1116:44:1572:-119.188,0,-78.1581	0/0:191:190,0:190:6807:0:0:0,-57.1957,-612.319	0/1:37:18,19:18:644:19:676:-50.0253,0,-47.0223	0/1:41:31,9:31:1112:9:324:-17.1494,0,-87.9901	0/0:105:105,0:105:3754:0:0:0,-31.6081,-338.042	0/1:109:64,45:64:2283:45:1603:-111.747,0,-172.869	0/1:104:60,44:60:2152:44:1580:-111.14,0,-162.613	0/1:101:62,39:62:2228:39:1400:-95.8952,0,-169.749	0/1:45:25,20:25:900:20:720:-51.5824,0,-67.7747	0/0:92:92,0:92:3267:0:0:0,-27.6948,-294.165	0/1:64:29,35:29:1040:35:1260:-94.4396,0,-74.6484	0/1:72:28,44:28:999:44:1584:-121.177,0,-68.5365	0/0:79:79,0:79:2831:0:0:0,-23.7814,-255.02	0/1:52:22,30:22:779:30:1080:-81.8147,0,-54.7779	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.87	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.539	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6289	0/0:130:130,0:130:4647:0:0:0,-39.1339,-418.295	0/1:113:68,45:68:2423:45:1616:-111.714,0,-184.3	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.739	0/1:66:25,41:25:900:41:1476:-113.268,0,-61.4507	0/1:93:48,45:48:1720:45:1620:-118.09,0,-127.085	0/1:59:23,36:23:828:36:1280:-97.7412,0,-57.0787	0/0:214:214,0:214:7664:0:0:0,-64.4204,-689.787	0/0:124:124,0:124:4447:0:0:0,-37.3277,-400.259	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.569	0/1:160:84,75:84:3000:75:2684:-193.581,0,-221.998	0/1:120:64,56:64:2295:56:2005:-144.599,0,-170.682	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.452	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9427	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:261:123,138:123:4419:138:4956:-367.6,0,-319.307	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.368	0/0:54:54,0:54:1926:0:0:0,-16.2556,-173.613	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:142:141,1:141:5030:1:36:0,-39.1531,-449.246	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:143:68,75:68:2427:75:2696:-199.832,0,-175.636	0/1:105:47,58:47:1692:58:2084:-156.222,0,-120.952	0/1:70:31,39:31:1112:39:1400:-105.227,0,-79.3169	0/1:93:53,40:53:1892:40:1428:-100.822,0,-142.562	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	0/0:111:111,0:111:3971:0:0:0,-33.4143,-357.573	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.498	0/1:85:53,32:53:1891:32:1148:-78.0247,0,-144.784	0/1:147:80,67:80:2872:67:2408:-172.725,0,-214.404	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.364	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9125	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:47:20,27:20:707:27:964:-72.8568,0,-49.7924	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.222	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5027	0/1:54:26,28:26:915:28:1008:-74.7807,0,-66.4099	0/0:137:137,0:137:4892:0:0:0,-41.2411,-440.408	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:168:168,0:168:6007:0:0:0,-50.573,-540.719	0/0:198:196,2:196:7026:2:72:0,-52.7672,-625.547	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.141	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9051	0/0:156:146,9:146:5235:9:324:0,-17.4865,-441.55	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.876	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.0713	0/0:81:80,1:80:2852:1:36:0,-20.7852,-253.296	0/0:91:90,0:90:3215:0:0:0,-27.0927,-289.208	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/0:79:78,0:78:2782:0:0:0,-23.4803,-250.394	0/1:52:18,34:18:631:34:1201:-92.741,0,-41.4621	0/1:110:49,61:49:1751:61:2183:-163.612,0,-124.755	0/0:179:179,0:179:6416:0:0:0,-53.8844,-577.463	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.945	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/0:94:93,1:93:3335:1:36:0,-24.7036,-296.747	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.086	0/0:151:151,0:151:5406:0:0:0,-45.4555,-486.65	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.377	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.631	0/1:128:60,68:60:2156:68:2432:-180.601,0,-155.766	0/0:193:192,1:192:6899:1:36:0,-54.5031,-617.277	0/1:50:19,31:19:680:31:1104:-84.6191,0,-46.4613	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.378	0/0:85:85,0:85:3051:0:0:0,-25.5875,-274.758	0/0:32:31,1:31:1116:1:36:0,-6.03468,-97.1488	0/1:67:37,30:37:1328:30:1080:-77.3442,0,-99.6394	0/1:84:23,61:23:828:61:2196:-172.619,0,-49.5553	0/0:63:61,2:61:2184:2:68:0,-12.5072,-190.361	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.242
chr06	4842215	.	ATT	GTC,ATC	163753	PASS	AB=0.494439,0.50118;ABP=3.80731,3.04616;AC=149,39;AF=0.792553,0.207447;AN=188;AO=6089,1507;CIGAR=1X1M1X,2M1X;DP=7622;DPB=7622;DPRA=0,0.975517;EPP=13155.7,3232.13;EPPR=0;GTI=0;LEN=3,1;MEANALT=1.76596,2.22449;MQM=59.7241,59.9157;MQMR=0;NS=94;NUMALT=2;ODDS=3.44009;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=214584,53754;QR=0;RO=0;RPL=6081,1502;RPP=13155.7,3232.13;RPPR=0;RPR=8,5;RUN=1,1;SAF=6089,1507;SAP=13225.1,3275.42;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,14,24:0:0:14,24:496,855:-110.45,-70.0455,-65.831,-40.7593,0,-33.5346	1/1:117:0,116,0:0:0:116,0:4045,0:-363.848,-34.9195,0,-363.848,-34.9195,-363.848	1/2:77:0,31,45:0:0:31,45:1073,1599:-217.481,-130.288,-120.956,-87.1836,0,-73.6373	1/1:195:0,195,0:0:0:195,0:6816,0:-613.5,-58.7009,0,-613.5,-58.7009,-613.5	1/2:37:0,18,18:0:0:18,18:640,648:-104.897,-52.874,-47.4555,-52.0209,0,-46.6024	1/2:41:0,32,9:0:0:32,9:1131,324:-118.77,-26.7966,-17.1636,-92.3315,0,-89.6223	1/1:107:0,107,0:0:0:107,0:3764,0:-338.949,-32.2102,0,-338.949,-32.2102,-338.949	1/2:109:0,64,45:0:0:64,45:2248,1604:-314.025,-131.104,-111.838,-183.276,0,-169.729	1/2:107:0,61,46:0:0:61,46:2127,1625:-305.599,-132.636,-114.274,-173.314,0,-159.466	1/2:101:0,61,39:0:0:61,39:2167,1396:-290.519,-113.944,-95.5811,-176.676,0,-164.936	1/2:45:0,25,19:0:0:25,19:882,680:-127.266,-55.4499,-47.9241,-71.8117,0,-66.0921	1/1:93:0,92,0:0:0:92,0:3247,0:-292.149,-27.6948,0,-292.149,-27.6948,-292.149	1/2:63:0,29,34:0:0:29,34:1019,1205:-181.458,-98.5189,-89.789,-83.2914,0,-73.0564	1/2:75:0,29,46:0:0:29,46:1030,1631:-217.145,-133.231,-124.501,-84.2687,0,-70.4213	1/1:80:0,78,0:0:0:78,0:2763,0:-248.589,-23.4803,0,-248.589,-23.4803,-248.589	1/2:52:0,23,28:0:0:23,28:779,950:-140.17,-77.013,-70.0893,-63.1369,0,-54.708	1/1:70:0,69,0:0:0:69,0:2450,0:-220.385,-20.7711,0,-220.385,-20.7711,-220.385	1/1:65:0,65,0:0:0:65,0:2299,0:-207.138,-19.567,0,-207.138,-19.567,-207.138	1/1:22:0,22,0:0:0:22,0:779,0:-70.4154,-6.62266,0,-70.4154,-6.62266,-70.4154	1/1:132:0,132,0:0:0:132,0:4646,0:-418.3,-39.736,0,-418.3,-39.736,-418.3	1/2:111:0,69,42:0:0:69,42:2384,1503:-316.612,-122.921,-102.15,-194.044,0,-181.401	1/1:83:0,83,0:0:0:83,0:2922,0:-263.212,-24.9855,0,-263.212,-24.9855,-263.212	1/2:66:0,26,40:0:0:26,40:902,1440:-191.169,-117.857,-110.03,-73.6641,0,-61.6229	1/2:97:0,51,46:0:0:51,46:1747,1656:-277.276,-135.481,-120.128,-142.147,0,-128.299	1/2:61:0,23,37:0:0:23,37:809,1311:-172.643,-106.792,-99.8681,-65.8442,0,-54.7061	1/1:219:0,218,0:0:0:218,0:7705,0:-693.186,-65.6245,0,-693.186,-65.6245,-693.186	1/1:125:0,124,1:0:0:124,1:4393,36:-395.115,-37.3277,0,-392.177,-34.0305,-391.876	1/1:50:0,50,0:0:0:50,0:1782,0:-160.55,-15.0515,0,-160.55,-15.0515,-160.55	1/2:161:0,85,76:0:0:85,76:3004,2723:-467.075,-222.434,-196.847,-244.997,0,-222.119	1/2:120:0,64,56:0:0:64,56:2259,2012:-348.44,-164.495,-145.23,-184.301,0,-167.443	1/1:88:0,88,0:0:0:88,0:3108,0:-279.16,-26.4906,0,-279.16,-26.4906,-279.16	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:4:0,4,0:0:0:4,0:142,0:-13.1245,-1.20412,0,-13.1245,-1.20412,-13.1245	1/1:8:0,8,0:0:0:8,0:284,0:-25.9036,-2.40824,0,-25.9036,-2.40824,-25.9036	1/1:4:0,4,0:0:0:4,0:130,0:-12.0201,-1.20412,0,-12.0201,-1.20412,-12.0201	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:266:0,122,144:0:0:122,144:4333,5126:-771.193,-418.128,-381.402,-353.42,0,-310.072	1/1:113:0,113,0:0:0:113,0:3976,0:-358.025,-34.0164,0,-358.025,-34.0164,-358.025	1/1:53:0,52,0:0:0:52,0:1847,0:-166.228,-15.6536,0,-166.228,-15.6536,-166.228	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:143:0,142,0:0:0:142,0:4977,0:-447.759,-42.7463,0,-447.759,-42.7463,-447.759	1/1:33:0,33,0:0:0:33,0:1184,0:-106.869,-9.93399,0,-106.869,-9.93399,-106.869	1/2:144:0,69,75:0:0:69,75:2425,2692:-417.319,-219.942,-199.171,-197.732,0,-175.154	1/2:107:0,45,60:0:0:45,60:1600,2137:-304.555,-174.175,-160.628,-130.376,0,-112.314	1/2:71:0,31,40:0:0:31,40:1091,1427:-205.498,-116.686,-107.354,-89.1665,0,-77.1253	1/2:95:0,55,40:0:0:55,40:1924,1428:-273.3,-116.776,-100.22,-156.877,0,-144.836	1/2:33:0,16,17:0:0:16,17:556,603:-94.6805,-49.482,-44.6655,-45.5493,0,-40.4318	1/1:112:0,111,1:0:0:111,1:3922,32:-352.848,-33.4143,0,-350.27,-30.516,-349.969	1/1:90:0,89,0:0:0:89,0:3155,0:-283.948,-26.7917,0,-283.948,-26.7917,-283.948	1/2:87:0,55,32:0:0:55,32:1940,1144:-251.514,-93.6189,-77.0623,-158.251,0,-148.618	1/2:145:0,78,65:0:0:78,65:2763,2319:-414.11,-189.043,-165.563,-225.062,0,-205.496	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:72:0,72,0:0:0:72,0:2555,0:-229.993,-21.6742,0,-229.993,-21.6742,-229.993	1/1:29:0,29,0:0:0:29,0:1033,0:-93.2815,-8.72987,0,-93.2815,-8.72987,-93.2815	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	1/2:47:0,20,26:0:0:20,26:696,923:-131.617,-75.0416,-69.021,-56.5672,0,-48.7404	1/1:49:0,49,0:0:0:49,0:1721,0:-155.166,-14.7505,0,-155.166,-14.7505,-155.166	1/2:13:0,5,8:0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chr06	4842227	.	C	T	23926.8	PASS	AB=0.5;ABP=3.0103;AC=39;AF=0.207447;AN=188;AO=1462;CIGAR=1X;DP=7488;DPB=7488;DPRA=0.992173;EPP=3143.05;EPPR=13001.6;GTI=0;LEN=1;MEANALT=1;MQM=59.9364;MQMR=59.7066;NS=94;NUMALT=1;ODDS=1.97447;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51702;QR=214111;RO=6026;RPL=1458;RPP=3143.05;RPPR=13001.6;RPR=4;RUN=1;SAF=1462;SAP=3177.7;SAR=0;SRF=6026;SRP=13088.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:14,22:14:487:22:761:-57.9698,0,-33.3221	0/0:115:115,0:115:4074:0:0:0,-34.6184,-366.824	0/1:74:31,43:31:1107:43:1508:-113.732,0,-77.6476	0/0:193:193,0:193:6857:0:0:0,-58.0988,-617.116	0/1:39:20,19:20:720:19:684:-50.1455,0,-53.2585	0/1:42:32,10:32:1129:10:356:-19.738,0,-89.2172	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.013	0/1:107:63,44:63:2241:44:1565:-108.929,0,-169.704	0/1:107:62,45:62:2194:45:1612:-113.107,0,-165.48	0/1:97:61,36:61:2160:36:1279:-86.2125,0,-165.414	0/1:44:24,20:24:845:20:695:-49.6261,0,-63.1218	0/0:93:93,0:93:3311:0:0:0,-27.9958,-298.128	0/1:63:28,35:28:993:35:1234:-92.3978,0,-70.7176	0/1:72:28,44:28:993:44:1546:-117.756,0,-67.9945	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.344	0/1:52:23,29:23:795:29:983:-73.1183,0,-56.2099	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.717	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.647	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8675	0/0:130:130,0:130:4563:0:0:0,-39.1339,-410.815	0/1:109:67,42:67:2379:42:1491:-101.672,0,-181.548	0/0:82:82,0:82:2912:0:0:0,-24.6845,-262.31	0/1:67:26,41:26:908:41:1471:-112.517,0,-61.8611	0/1:92:47,45:47:1665:45:1612:-117.675,0,-122.431	0/1:61:24,37:24:864:37:1287:-97.7598,0,-59.7151	0/0:217:217,0:217:7729:0:0:0,-65.3235,-695.637	0/0:124:124,0:124:4425:0:0:0,-37.3277,-398.276	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.398	0/1:153:83,70:83:2956:70:2500:-179.195,0,-220.206	0/1:116:63,53:63:2246:53:1884:-134.919,0,-167.478	0/0:87:87,0:87:3096:0:0:0,-26.1896,-277.911	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9399	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:254:120,134:120:4259:134:4735:-349.831,0,-307.024	0/0:113:113,0:113:4022:0:0:0,-34.0164,-362.15	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.69	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:136:136,0:136:4850:0:0:0,-40.9401,-436.637	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:138:67,71:67:2383:71:2507:-184.334,0,-173.181	0/1:100:46,54:46:1620:54:1917:-142.702,0,-115.976	0/1:69:30,39:30:1076:39:1374:-103.186,0,-76.3818	0/1:92:53,39:53:1874:39:1396:-98.2443,0,-141.242	0/1:33:16,17:16:567:17:591:-43.5807,0,-41.4267	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.906	0/0:87:87,0:87:3092:0:0:0,-26.1896,-278.222	0/1:84:54,30:54:1912:30:1054:-69.8804,0,-146.97	0/1:146:79,67:79:2831:67:2371:-169.698,0,-211.016	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:71:71,0:71:2521:0:0:0,-21.3731,-226.934	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5598	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:46:20,26:20:699:26:932:-70.3515,0,-49.3713	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.074	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:15:10,5:10:342:5:175:-11.5777,0,-26.5936	0/1:53:24,29:24:845:29:1031:-77.148,0,-60.4125	0/0:138:138,0:138:4903:0:0:0,-41.5421,-441.4	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978	0/0:167:167,0:167:5937:0:0:0,-50.272,-534.425	0/0:196:195,1:195:6953:1:36:0,-55.4036,-622.209	0/0:56:55,1:55:1937:1:36:0,-13.2594,-170.992	0/0:29:29,0:29:1016:0:0:0,-8.72987,-91.7397	0/0:155:146,9:146:5181:9:320:0,-17.5173,-437.004	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.115	0/0:19:19,0:19:663:0:0:0,-5.71957,-59.9856	0/0:79:79,0:79:2806:0:0:0,-23.7814,-252.76	0/0:90:90,0:90:3206:0:0:0,-27.0927,-288.755	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/0:77:77,0:77:2729:0:0:0,-23.1793,-245.832	0/1:50:18,32:18:626:32:1136:-87.4974,0,-41.6118	0/1:108:49,59:49:1755:59:2087:-155.516,0,-125.717	0/0:175:174,1:174:6168:1:36:0,-49.082,-551.604	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:90:90,0:90:3203:0:0:0,-27.0927,-288.455	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/0:95:95,0:95:3366:0:0:0,-28.5978,-303.132	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.318	0/0:150:150,0:150:5343:0:0:0,-45.1545,-480.984	0/0:108:108,0:108:3851:0:0:0,-32.5112,-346.773	0/0:57:57,0:57:2024:0:0:0,-17.1587,-182.428	0/1:129:60,69:60:2130:69:2430:-180.121,0,-153.126	0/0:196:196,0:196:6931:0:0:0,-59.0019,-623.808	0/1:49:18,31:18:635:31:1075:-82.3057,0,-42.7101	0/0:120:120,0:120:4230:0:0:0,-36.1236,-380.853	0/0:86:86,0:86:3067:0:0:0,-25.8886,-276.196	0/0:31:30,1:30:1059:1:36:0,-5.73365,-92.0175	0/1:66:37,29:37:1310:29:1027:-72.8742,0,-98.3183	0/1:83:22,61:22:768:61:2152:-168.96,0,-44.4521	0/0:63:61,2:61:2177:2:68:0,-12.5072,-189.73	0/0:100:100,0:100:3571:0:0:0,-30.103,-321.593
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chr06	4848954	.	A	G	87110.9	PASS	AB=0.463684;ABP=26.8255;AC=139;AF=0.747312;AN=186;AO=3361;CIGAR=1X;DP=4542;DPB=4542;DPRA=0;EPP=1581.36;EPPR=669.917;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.983;MQMR=59.9983;NS=93;NUMALT=1;ODDS=0.50988;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119327;QR=42080;RO=1180;RPL=0;RPP=7301.33;RPPR=2565.35;RPR=3361;RUN=1;SAF=899;SAP=1581.36;SAR=2462;SRF=289;SRP=669.917;SRR=891;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:21:11,10:11:392:10:356:-26.0596,0,-29.2984	1/1:19:0,18:0:0:18:644:-57.9687,-5.41854,0	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:22:12,10:12:428:10:356:-25.7586,0,-32.2361	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:43:29,14:29:1021:14:504:-32.7456,0,-79.256	0/1:21:14,7:14:495:7:252:-16.7073,0,-38.5614	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/1:205:77,128:77:2736:128:4518:-345.082,0,-184.77	1/1:80:0,80:0:0:80:2791:-251.429,-24.0824,0	0/1:65:31,34:31:1107:34:1211:-89.7286,0,-80.3732	0/1:73:37,36:37:1319:36:1271:-92.7169,0,-97.036	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:55:24,31:24:855:31:1100:-82.7536,0,-60.7135	1/1:56:0,56:0:0:56:1966:-177.211,-16.8577,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:148:0,148:0:0:148:5235:-471.289,-44.5524,0	1/1:15:0,15:0:0:15:523:-47.3985,-4.51545,0	0/1:28:21,7:21:744:7:252:-14.6001,0,-58.8555	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3376	0/1:23:17,6:17:608:6:216:-12.8668,0,-48.1283	0/0:17:16,1:16:572:1:36:0,-1.51923,-48.2152	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:18:16,2:16:572:2:64:-0.660154,0,-46.3949	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	0/1:49:29,20:29:1036:20:716:-50.0172,0,-78.8034	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	0/1:65:36,29:36:1288:29:1023:-72.8148,0,-96.6566	0/1:95:61,34:61:2175:34:1188:-78.6243,0,-167.418	1/1:42:0,42:0:0:42:1491:-134.484,-12.6433,0	0/1:127:52,75:52:1860:75:2663:-201.686,0,-129.449	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:279:0,279:0:0:279:9878:-888.964,-83.9874,0	0/1:64:42,22:42:1500:22:792:-52.3398,0,-116.028	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	1/1:95:0,95:0:0:95:3392:-305.496,-28.5979,0	0/1:17:11,6:11:396:6:212:-14.3073,0,-30.8652	0/1:49:16,33:16:576:33:1172:-91.037,0,-37.4245	0/1:49:18,31:18:644:31:1092:-83.8372,0,-43.5401	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:26:12,14:12:428:14:500:-37.5094,0,-31.032	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:66:36,30:36:1292:30:1068:-76.5641,0,-96.7158	1/1:20:1,19:1:36:19:680:-57.9309,-2.42233,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:37:25,12:25:900:12:415:-26.5389,0,-70.1829	0/1:18:13,5:13:464:5:176:-10.7665,0,-36.679	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:32:23,9:23:819:9:324:-19.8729,0,-64.3986	0/1:50:35,15:35:1248:15:532:-33.1616,0,-97.5734	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	0/1:32:15,17:15:532:17:599:-44.6051,0,-38.5801	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	.:.:.:.:.:.:.:.	0/1:19:3,16:3:108:16:548:-43.9217,0,-4.3556	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:247:0,247:0:0:247:8750:-787.494,-74.3544,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:66:0,66:0:0:66:2363:-212.928,-19.868,0	0/1:36:32,4:32:1132:4:131:-1.27639,0,-91.3515	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	0/1:42:26,16:26:928:16:572:-39.1702,0,-71.195	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:49:48,1:48:1705:1:36:0,-11.1522,-150.136	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:89:0,89:0:0:89:3172:-285.706,-26.7917,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:67:24,43:24:864:43:1524:-117.284,0,-57.9136	1/1:120:0,120:0:0:120:4304:-387.536,-36.1236,0	0/1:41:22,19:22:779:19:668:-48.1034,0,-58.0898	1/1:65:0,65:0:0:65:2322:-209.24,-19.567,0	1/1:63:0,63:0:0:63:2229:-200.874,-18.9649,0	1/1:286:0,286:0:0:286:10134:-912.001,-86.0946,0	0/1:348:182,166:182:6474:166:5875:-423.976,0,-477.988	0/1:60:41,19:41:1463:19:667:-42.2928,0,-113.903	1/1:12:0,12:0:0:12:421:-38.2235,-3.61236,0	1/1:80:0,80:0:0:80:2860:-257.638,-24.0824,0
chr06	4848999	.	T	G	25788.5	PASS	AB=0.534785;ABP=25.2173;AC=46;AF=0.247312;AN=186;AO=1180;CIGAR=1X;DP=4610;DPB=4610;DPRA=0.919018;EPP=714.966;EPPR=1655.68;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9983;MQMR=59.9898;NS=93;NUMALT=1;ODDS=0.21085;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42153;QR=122556;RO=3427;RPL=1180;RPP=2565.35;RPPR=7444.65;RPR=0;RUN=1;SAF=279;SAP=714.966;SAR=901;SRF=906;SRP=1655.68;SRR=2521;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:23:11,12:11:396:12:424:-31.5727,0,-29.0591	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/1:13:6,7:6:216:7:247:-18.6595,0,-15.8771	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:43:13,30:13:468:30:1076:-84.2086,0,-29.5154	0/1:21:7,14:7:252:14:500:-39.0145,0,-16.7073	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:209:130,79:130:4661:79:2827:-191.753,0,-356.734	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/1:66:35,31:35:1243:31:1085:-78.0898,0,-92.3059	0/1:73:36,37:36:1292:37:1315:-96.6758,0,-94.6086	0/0:58:58,0:58:2051:0:0:0,-17.4597,-184.859	0/1:56:31,25:31:1112:25:896:-64.1027,0,-83.5337	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:152:152,0:152:5456:0:0:0,-45.7566,-491.167	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:27:7,20:7:252:20:716:-56.6399,0,-14.9011	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:14:9,5:9:305:5:180:-12.3376,0,-23.5628	0/1:24:6,18:6:216:18:630:-49.8005,0,-12.5658	0/1:16:2,14:2:72:14:500:-40.5197,0,-2.02024	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:17:2,15:2:72:15:540:-43.819,0,-1.71921	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:49:20,29:20:720:29:1040:-79.1639,0,-50.3783	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:66:29,37:29:1044:37:1332:-100.314,0,-74.4068	0/1:98:38,60:38:1356:60:2127:-162.197,0,-92.8395	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.658	0/1:126:75,51:75:2692:51:1832:-127.231,0,-204.594	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:287:287,0:287:10277:0:0:0,-86.3956,-924.845	0/1:66:24,42:24:849:42:1504:-115.786,0,-56.8598	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:50:32,18:32:1140:18:644:-43.2391,0,-87.8577	0/1:50:32,18:32:1134:18:640:-42.8778,0,-87.3157	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:14:14,0:14:480:0:0:0,-4.21442,-43.5238	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:10:2,8:2:72:8:276:-22.1644,0,-3.82642	0/1:67:31,36:31:1093:36:1296:-96.7749,0,-78.5087	0/0:20:19,1:19:667:1:36:0,-2.42232,-56.7564	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:37:12,25:12:432:25:891:-69.3707,0,-28.0749	0/1:20:6,14:6:216:14:500:-39.3156,0,-13.7699	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:32:9,23:9:324:23:828:-65.2112,0,-19.8729	0/1:50:15,35:15:536:35:1248:-97.5734,0,-33.5233	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/0:65:65,0:65:2309:0:0:0,-19.5669,-208.069	0/1:31:16,15:16:564:15:540:-39.6046,0,-41.7584	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7375	0/0:250:248,0:248:8870:0:0:0,-74.6554,-797.966	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/1:36:4,32:4:144:32:1140:-92.0716,0,-2.47654	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:26:13,13:13:451:13:464:-34.2707,0,-33.093	0/1:41:15,26:15:536:26:928:-71.496,0,-36.2326	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:50:1,49:1:36:49:1733:-152.654,-11.4532,0	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:90:90,0:90:3204:0:0:0,-27.0927,-288.582	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:69:44,25:44:1576:25:896:-60.1893,0,-121.36	0/0:123:123,0:123:4401:0:0:0,-37.0267,-396.261	0/1:41:19,22:19:684:22:792:-59.2634,0,-49.5481	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:290:290,0:290:10401:0:0:0,-87.2987,-936.005	0/1:353:171,181:171:6116:181:6482:-477.141,0,-444.219	0/1:59:19,40:19:661:40:1428:-111.057,0,-42.0508	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951
chr06	4849008	.	G	A	85806.4	PASS	AB=0.459288;ABP=32.5375;AC=139;AF=0.747312;AN=186;AO=3301;CIGAR=1X;DP=4473;DPB=4473;DPRA=0;EPP=1626.54;EPPR=718.133;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.9827;MQMR=59.9889;NS=93;NUMALT=1;ODDS=0.73425;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117738;QR=41836;RO=1171;RPL=3301;RPP=7171.04;RPPR=2545.8;RPR=0;RUN=1;SAF=865;SAP=1626.54;SAR=2436;SRF=275;SRP=718.133;SRR=896;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:7,2:7:248:2:71:-4.03279,0,-19.9549	1/1:31:0,31:0:0:31:1097:-99.0389,-9.33193,0	0/1:23:12,11:12:424:11:392:-28.6964,0,-31.5727	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/1:21:12,9:12:428:9:324:-23.1842,0,-32.5372	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:43:30,13:30:1068:13:468:-29.5071,0,-83.4878	0/1:21:14,7:14:496:7:252:-16.7073,0,-38.6526	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/1:200:76,124:76:2723:124:4368:-333.088,0,-185.106	1/1:79:0,79:0:0:79:2827:-254.668,-23.7814,0	0/1:65:31,34:31:1112:34:1208:-89.4591,0,-80.8244	0/1:70:36,34:36:1283:34:1224:-89.3949,0,-94.7005	1/1:56:0,56:0:0:56:1993:-179.642,-16.8577,0	0/1:54:25,29:25:896:29:1023:-76.1261,0,-64.7047	1/1:55:0,55:0:0:55:1959:-176.585,-16.5567,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:144:0,144:0:0:144:5113:-460.313,-43.3483,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:28:21,7:21:739:7:244:-13.8706,0,-58.4035	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:24:18,6:18:640:6:216:-12.5658,0,-50.7046	0/1:17:15,2:15:540:2:72:-1.71921,0,-43.819	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:27:0,27:0:0:27:957:-86.4439,-8.12781,0	0/0:14:13,1:13:468:1:36:0,-0.616145,-38.8614	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:49:29,20:29:1036:20:701:-48.6613,0,-78.8034	1/1:41:0,41:0:0:41:1457:-131.424,-12.3422,0	0/1:62:36,26:36:1296:26:932:-65.535,0,-98.2801	0/1:98:62,36:62:2212:36:1292:-87.0828,0,-169.833	1/1:42:0,42:0:0:42:1478:-133.31,-12.6433,0	0/1:124:48,75:48:1712:75:2665:-202.708,0,-116.979	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:273:0,273:0:0:273:9750:-877.439,-82.1812,0	0/1:65:41,24:41:1476:24:856:-57.7942,0,-113.569	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:95:0,95:0:0:95:3400:-306.215,-28.5979,0	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:48:18,30:18:644:30:1072:-82.343,0,-43.8412	0/1:48:18,30:18:632:30:1059:-81.171,0,-42.7573	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:14:0,14:0:0:14:492:-44.6123,-4.21442,0	0/1:27:13,14:13:455:14:504:-37.5703,0,-33.1541	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:64:35,29:35:1260:29:1032:-73.9276,0,-94.4396	1/1:19:1,18:1:36:18:648:-55.0536,-2.1213,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:36:24,12:24:864:12:432:-28.3759,0,-67.2455	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:29:21,8:21:752:8:284:-17.1735,0,-59.2764	0/1:50:36,14:36:1288:14:504:-30.6466,0,-101.172	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	1/1:65:0,65:0:0:65:2319:-208.971,-19.567,0	0/1:32:15,17:15:536:17:612:-45.7805,0,-38.9419	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:3:0,3:0:0:3:89:-8.30436,-0.90309,0	.:.:.:.:.:.:.:.	0/1:18:3,15:3:108:15:536:-43.1563,0,-4.65663	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:241:0,241:0:0:241:8585:-772.637,-72.5482,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	0/1:36:32,4:32:1148:4:144:-2.47654,0,-92.7928	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:25:13,12:13:464:12:432:-31.6954,0,-34.5718	0/1:39:23,16:23:824:16:568:-39.7117,0,-62.7431	1/1:9:0,9:0:0:9:309:-28.1407,-2.70927,0	1/1:18:0,18:0:0:18:642:-58.1101,-5.41854,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:49:48,1:48:1716:1:36:0,-11.1522,-151.127	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:67:26,41:26:898:41:1449:-110.535,0,-60.9633	1/1:116:0,116:0:0:116:4136:-372.425,-34.9195,0	0/1:38:21,17:21:752:17:600:-42.8901,0,-56.5671	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:285:0,285:0:0:285:10194:-917.386,-85.7936,0	0/1:350:183,167:183:6542:167:5949:-430.029,0,-483.502	0/1:55:39,16:39:1396:16:568:-34.8952,0,-109.382	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:81:1,80:1:36:80:2864:-254.399,-20.7852,0
chr06	5046962	.	TTA	CTA,CTT	230651	PASS	AB=0.463772,0.535218;ABP=48.1661,45.6838;AC=142,44;AF=0.763441,0.236559;AN=186;AO=8430,2150;CIGAR=1X2M,1X1M1X;DP=10604;DPB=10604;DPRA=38.8205,1.07511;EPP=18299.8,4671.68;EPPR=9.52472;GTI=5;LEN=1,3;MEANALT=1.78022,2.05556;MQM=59.9407,59.5214;MQMR=60;NS=93;NUMALT=2;ODDS=0.403215;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=301021,75964;QR=101;RO=3;RPL=1,0;RPP=18299.8,4671.68;RPPR=9.52472;RPR=8429,2150;RUN=1,1;SAF=0,0;SAP=18308.5,4671.68;SAR=8430,2150;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:45:0,24,21:0:0:24,21:856,743:-130.645,-60.8639,-53.6392,-70.1364,0,-63.8148	1/1:118:0,118,0:0:0:118,0:4218,0:-379.794,-35.5215,0,-379.794,-35.5215,-379.794	1/2:161:0,78,83:0:0:78,83:2796,2946:-468.294,-240.251,-216.77,-228.4,0,-203.414	1/1:338:0,336,2:0:0:336,2:11956,72:-1075.45,-101.146,0,-1069.57,-94.9139,-1068.97	1/2:89:0,37,52:0:0:37,52:1319,1839:-257.597,-150.079,-138.94,-107.873,0,-92.2195	1/2:55:0,26,29:0:0:26,29:932,1028:-160.116,-84.1,-76.2732,-76.3721,0,-67.6422	1/1:210:0,209,0:0:0:209,0:7500,0:-674.679,-62.9153,0,-674.679,-62.9153,-674.679	1/2:143:0,82,61:0:0:82,61:2915,2141:-412.105,-174.556,-149.872,-237.901,0,-219.539	1/2:160:0,73,87:0:0:73,87:2620,3067:-463.541,-249.824,-227.849,-214.072,0,-187.882	1/2:169:0,74,95:0:0:74,95:2648,3331:-487.151,-271.215,-248.939,-216.29,0,-187.692	1/2:34:0,16,18:0:0:16,18:572,642:-99.3292,-52.6892,-47.8727,-46.9969,0,-41.5784	1/1:64:0,63,0:0:0:63,0:2252,0:-202.583,-18.9649,0,-202.583,-18.9649,-202.583	1/2:65:0,21,44:0:0:21,44:748,1566:-188.934,-127.966,-121.644,-61.3237,0,-48.0783	1/2:46:0,14,32:0:0:14,32:500,1132:-133.321,-92.5557,-88.3413,-41.1218,0,-31.4888	1/1:75:0,74,0:0:0:74,0:2620,0:-235.835,-22.2762,0,-235.835,-22.2762,-235.835	1/2:53:0,28,25:0:0:28,25:983,863:-150.33,-70.3253,-61.8964,-80.3523,0,-72.8266	1/1:58:0,58,0:0:0:58,0:2060,0:-185.655,-17.4597,0,-185.655,-17.4597,-185.655	1/1:83:0,83,0:0:0:83,0:2976,0:-268.072,-24.9855,0,-268.072,-24.9855,-268.072	1/1:22:0,21,0:0:0:21,0:748,0:-67.2856,-6.32163,0,-67.2856,-6.32163,-67.2856	1/1:373:0,372,1:0:0:372,1:13306,36:-1196.97,-111.983,0,-1194.03,-108.686,-1193.73	1/2:179:0,70,109:0:0:70,109:2516,3836:-517.876,-312.613,-291.541,-205.619,0,-172.807	1/1:205:1,203,1:1:36:203,1:7282,27:-651.865,-58.1242,0,-650.084,-59.0739,-652.721	1/2:107:0,45,62:0:0:45,62:1590,2180:-307.025,-177.582,-164.036,-129.795,0,-111.131	1/2:149:0,83,66:0:0:83,66:2953,2320:-429.82,-189.155,-164.17,-241.018,0,-221.15	1/2:122:0,62,60:0:0:62,60:2220,2123:-354.28,-173.251,-154.588,-181.384,0,-163.322	1/1:309:0,308,0:0:0:308,0:11000,0:-989.538,-92.7172,0,-989.538,-92.7172,-989.538	1/1:202:1,200,1:1:29:200,1:7161,36:-641.601,-57.9323,0,-638.964,-57.2337,-640.972	1/1:35:0,35,0:0:0:35,0:1256,0:-113.345,-10.5361,0,-113.345,-10.5361,-113.345	1/2:407:0,178,229:0:0:178,229:6357,8103:-1177.89,-659.609,-606.026,-518.634,0,-449.698	1/2:134:0,48,86:0:0:48,86:1715,3049:-388.533,-248.706,-234.257,-140.183,0,-114.295	1/1:81:0,81,0:0:0:81,0:2871,0:-258.256,-24.3834,0,-258.256,-24.3834,-258.256	2/2:4:0,0,4:0:0:0,4:0,136:-12.575,-12.575,-12.575,-1.20412,-1.20412,0	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:173:0,88,84:0:0:88,84:3138,2971:-497.774,-241.975,-215.484,-255.795,0,-230.508	1/1:251:0,251,0:0:0:251,0:8965,0:-806.59,-75.5585,0,-806.59,-75.5585,-806.59	1/1:44:0,44,0:0:0:44,0:1545,0:-139.34,-13.2453,0,-139.34,-13.2453,-139.34	.:.:.:.:.:.:.:.	1/1:224:0,224,0:0:0:224,0:7992,0:-719.244,-67.4307,0,-719.244,-67.4307,-719.244	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/2:191:0,110,79:0:0:110,79:3933,2806:-549.361,-228.668,-195.555,-320.734,0,-296.953	1/2:42:0,13,29:0:0:13,29:468,1024:-121.772,-83.5835,-79.6701,-38.5463,0,-29.8164	1/2:63:0,30,33:0:0:30,33:1080,1180:-184.684,-96.5602,-87.5293,-88.4823,0,-78.5484	1/2:183:0,94,89:0:0:94,89:3338,3180:-531.603,-259.619,-231.322,-272.34,0,-245.548	1/2:120:0,53,67:0:0:53,67:1900,2382:-349.414,-194.448,-178.493,-155.323,0,-135.154	1/1:183:0,183,0:0:0:183,0:6497,0:-584.815,-55.0885,0,-584.815,-55.0885,-584.815	1/1:184:0,184,0:0:0:184,0:6576,0:-591.913,-55.3895,0,-591.913,-55.3895,-591.913	1/2:285:0,139,146:0:0:139,146:4965,5177:-826.885,-422.088,-380.244,-405.153,0,-361.203	1/2:199:0,71,128:0:0:71,128:2530,4534:-575.856,-369.634,-348.261,-206.577,0,-168.046	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/1:205:0,203,0:0:0:203,0:7284,0:-655.316,-61.1091,0,-655.316,-61.1091,-655.316	1/1:29:0,29,0:0:0:29,0:1036,0:-93.5539,-8.72987,0,-93.5539,-8.72987,-93.5539	1/2:10:0,3,7:0:0:3,7:108,246:-29.1897,-20.3749,-19.4718,-9.17208,0,-7.06487	1/2:140:0,60,80:0:0:60,80:2140,2787:-401.337,-226.883,-208.821,-174.806,0,-150.724	1/1:103:0,98,5:0:0:98,5:3516,180:-316.289,-29.5009,0,-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chr06	5047803	.	T	C	48488	PASS	AB=0.327202;ABP=538.832;AC=137;AF=0.736559;AN=186;AO=2416;CIGAR=1X;DP=3850;DPB=3850;DPRA=13.2653;EPP=5249.29;EPPR=3114.73;GTI=5;LEN=1;MEANALT=1.01124;MQM=59.9855;MQMR=59.9602;NS=93;NUMALT=1;ODDS=0.55113;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86185;QR=51351;RO=1433;RPL=2416;RPP=5249.29;RPPR=3114.73;RPR=0;RUN=1;SAF=0;SAP=5249.29;SAR=2416;SRF=0;SRP=3114.73;SRR=1433;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:9,7:9:324:7:244:-17.4829,0,-24.6894	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:59:39,20:39:1400:20:712:-46.6459,0,-108.538	1/1:87:0,87:0:0:87:3096:-278.869,-26.1896,0	0/0:26:24,2:24:864:2:72:0,-0.990057,-71.2458	0/1:13:7,6:7:248:6:212:-15.5114,0,-18.7508	1/1:48:0,48:0:0:48:1713:-154.454,-14.4494,0	0/1:92:78,14:78:2800:14:504:-18.0033,0,-224.545	0/1:58:34,24:34:1216:24:852:-59.5406,0,-92.2868	0/1:69:40,29:40:1440:29:1040:-73.1433,0,-109.127	0/1:52:32,20:32:1148:20:711:-48.6621,0,-87.9763	1/1:59:0,59:0:0:59:2086:-187.153,-17.7608,0	0/1:67:51,16:51:1828:16:576:-32.006,0,-144.632	0/1:56:39,17:39:1404:17:612:-38.5558,0,-109.802	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	0/1:38:24,14:24:860:14:492:-33.1732,0,-66.2827	1/1:19:1,18:1:36:18:644:-54.6923,-2.1213,0	1/1:20:1,19:1:36:19:684:-58.2921,-2.42233,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:95:47,48:47:1684:48:1724:-126.848,0,-123.249	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:63:43,20:43:1544:20:720:-46.1639,0,-120.288	0/1:54:42,12:42:1500:12:432:-22.9656,0,-119.039	0/1:36:24,12:24:864:12:432:-28.3841,0,-67.2455	1/1:103:0,103:0:0:103:3669:-330.413,-31.0061,0	1/1:44:0,44:0:0:44:1552:-139.972,-13.2453,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:121:67,54:67:2408:54:1924:-137.012,0,-180.552	0/1:82:51,31:51:1832:31:1101:-74.7148,0,-140.476	1/1:37:1,36:1:36:36:1287:-112.535,-7.53984,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/1:150:102,48:102:3664:48:1724:-110.291,0,-284.808	1/1:56:0,56:0:0:56:1989:-179.282,-16.8577,0	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:57:0,57:0:0:57:2039:-183.782,-17.1587,0	1/1:19:0,19:0:0:19:656:-59.3603,-5.71957,0	0/1:37:25,12:25:900:12:432:-28.0831,0,-70.1829	0/1:53:36,17:36:1288:17:608:-39.0974,0,-100.269	0/1:50:33,17:33:1188:17:602:-39.4582,0,-92.1771	0/1:39:27,12:27:953:12:428:-27.1186,0,-74.3431	0/1:55:42,13:42:1504:13:464:-25.5409,0,-119.098	1/1:32:0,31:0:0:31:1108:-99.6712,-9.33193,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:82:56,26:56:2004:26:936:-59.875,0,-155.949	0/1:73:49,24:49:1741:24:848:-54.6645,0,-134.997	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:51:34,17:34:1208:17:612:-40.0609,0,-93.1799	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0812	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/1:57:47,10:47:1673:10:360:-15.5856,0,-133.697	1/1:56:0,56:0:0:56:1996:-179.914,-16.8577,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:42:0,42:0:0:42:1485:-133.943,-12.6433,0	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	1/1:48:2,46:2:72:46:1625:-139.7,-7.61272,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:31:0,31:0:0:31:1102:-99.4902,-9.33193,0	1/1:26:0,26:0:0:26:927:-83.7474,-7.82678,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:52:33,19:33:1172:19:680:-45.8756,0,-90.0881	0/1:67:46,21:46:1656:21:756:-48.1982,0,-129.159	1/1:74:0,74:0:0:74:2664:-240.005,-22.2762,0	1/1:10:0,10:0:0:10:347:-31.5628,-3.0103,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:38:0,38:0:0:38:1345:-121.348,-11.4391,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:67:56,11:56:2004:11:384:-14.7257,0,-160.465	1/1:66:1,65:1:36:65:2324:-205.822,-16.2697,0	0/1:26:21,5:21:756:5:180:-8.72528,0,-60.5404	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:27:0,27:0:0:27:952:-85.994,-8.12781,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:92:59,33:59:2112:33:1176:-78.4516,0,-162.654	0/1:70:48,22:48:1720:22:772:-48.7292,0,-134.013	1/1:5:0,5:0:0:5:174:-16.0013,-1.50515,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0
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chr06	5160189	.	T	C	97641.1	PASS	AB=0.474164;ABP=16.3625;AC=143;AF=0.760638;AN=188;AO=4569;CIGAR=1X;DP=5806;DPB=5806;DPRA=11.4526;EPP=9924.47;EPPR=2676.09;GTI=2;LEN=1;MEANALT=1.06522;MQM=59.9628;MQMR=59.9968;NS=94;NUMALT=1;ODDS=2.23629;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162956;QR=44162;RO=1231;RPL=0;RPP=9924.47;RPPR=2676.09;RPR=4569;RUN=1;SAF=4569;SAP=9924.47;SAR=0;SRF=1231;SRP=2676.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:2,17:2:72:17:612:-49.6939,0,-1.11715	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:136:60,76:60:2160:76:2704:-202.665,0,-153.727	1/1:83:0,83:0:0:83:2964:-266.994,-24.9855,0	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:55:0,55:0:0:55:1967:-177.305,-16.5567,0	0/1:79:47,32:47:1688:32:1148:-79.8485,0,-128.426	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:77:44,33:44:1572:33:1168:-82.2479,0,-118.592	0/1:54:31,23:31:1112:23:824:-58.2277,0,-84.1357	1/1:61:0,61:0:0:61:2142:-193.046,-18.3628,0	0/1:51:31,20:31:1116:20:716:-49.4152,0,-85.3992	0/1:55:31,24:31:1116:24:852:-60.4437,0,-84.195	1/1:64:0,64:0:0:64:2269:-204.471,-19.2659,0	0/1:54:29,25:29:1025:25:896:-64.7047,0,-76.3051	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	1/1:36:0,36:0:0:36:1273:-114.872,-10.8371,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	0/1:153:86,67:86:3088:67:2400:-170.199,0,-232.09	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	0/1:25:8,17:8:288:17:612:-47.8877,0,-18.7417	0/1:30:8,22:8:284:22:785:-61.9433,0,-16.8725	0/1:15:10,5:10:360:5:176:-11.6696,0,-28.2289	1/1:190:0,190:0:0:190:6780:-610.276,-57.1957,0	1/1:127:0,127:0:0:127:4548:-409.486,-38.2308,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:129:78,51:78:2792:51:1812:-124.529,0,-212.688	0/1:65:35,30:35:1256:30:1076:-77.5859,0,-93.7783	1/1:39:0,39:0:0:39:1388:-125.219,-11.7402,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:184:104,79:104:3740:79:2836:-200.03,0,-281.348	1/1:75:0,75:0:0:75:2670:-240.439,-22.5773,0	1/1:34:0,33:0:0:33:1184:-106.509,-9.93399,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:31:0,31:0:0:31:1092:-98.5896,-9.33193,0	0/1:47:23,24:23:828:24:852:-62.852,0,-60.6957	0/1:52:31,20:31:1116:20:720:-49.4164,0,-85.0393	0/1:47:26,21:26:928:21:752:-53.8578,0,-69.6898	0/1:29:19,10:19:684:10:352:-23.2883,0,-53.1605	0/1:48:20,28:20:720:28:1000:-75.8659,0,-50.6793	1/1:83:2,81:2:72:81:2896:-254.04,-18.1488,0	1/1:79:0,78:0:0:78:2780:-250.082,-23.4803,0	0/1:127:60,67:60:2156:67:2404:-178.386,0,-156.076	0/1:70:30,40:30:1076:40:1413:-106.395,0,-76.0808	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:74:0,74:0:0:74:2633:-237.217,-22.2762,0	1/1:56:0,56:0:0:56:1972:-177.755,-16.8577,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:96:37,59:37:1324:59:2081:-158.66,0,-90.5632	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:12:1,11:1:36:11:392:-32.0218,-0.0140851,0	0/1:9:7,2:7:252:2:68:-3.74844,0,-20.3197	0/1:71:39,32:39:1377:32:1144:-81.8964,0,-102.854	1/1:80:0,80:0:0:80:2856:-256.908,-24.0824,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:281:0,280:0:0:280:9974:-897.245,-84.2884,0	1/1:140:1,139:1:36:139:4980:-444.75,-38.5459,0	1/1:97:0,97:0:0:97:3466:-312.15,-29.1999,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:73:1,72:1:36:72:2563:-227.319,-18.3769,0	1/1:149:3,146:3:108:146:5240:-461.654,-34.7783,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:32:0,32:0:0:32:1130:-102.008,-9.63296,0	1/1:27:0,27:0:0:27:960:-86.7157,-8.12781,0	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	1/1:49:0,49:0:0:49:1752:-157.928,-14.7505,0	0/1:120:65,55:65:2336:55:1967:-141.181,0,-174.376	0/1:102:45,57:45:1612:57:2040:-153.167,0,-114.665	1/1:194:0,194:0:0:194:6874:-618.667,-58.3998,0	1/1:29:0,29:0:0:29:1021:-92.1981,-8.72987,0	1/1:117:1,116:1:36:116:4144:-369.532,-31.6222,0	0/1:20:8,12:8:284:12:428:-32.8382,0,-19.8828	1/1:71:0,71:0:0:71:2524:-227.413,-21.3731,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	1/1:65:0,65:0:0:65:2309:-208.071,-19.567,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:66:0,66:0:0:66:2371:-213.648,-19.868,0	0/1:31:26,5:26:936:5:180:-7.22014,0,-75.2275	1/1:102:2,99:2:72:99:3548:-312.692,-23.9271,0	0/1:24:9,15:9:324:15:532:-40.9851,0,-22.2811	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	1/1:54:0,54:0:0:54:1923:-173.346,-16.2556,0	1/1:32:0,32:0:0:32:1127:-101.466,-9.63296,0	0/1:114:57,57:57:2044:57:2039:-149.464,0,-149.914	0/1:56:39,17:39:1404:17:596:-37.1055,0,-109.802	1/1:141:0,141:0:0:141:5044:-454.098,-42.4452,0	1/1:56:0,56:0:0:56:2001:-180.363,-16.8577,0
chr06	5171033	.	C	G	94791.5	PASS	AB=0.46937;ABP=21.8997;AC=144;AF=0.765957;AN=188;AO=4459;CIGAR=1X;DP=5706;DPB=5706;DPRA=20.6522;EPP=9685.61;EPPR=2699.98;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.9778;MQMR=60;NS=94;NUMALT=1;ODDS=0.864717;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158534;QR=43964;RO=1242;RPL=4458;RPP=9676.92;RPPR=2699.98;RPR=1;RUN=1;SAF=4458;SAP=9676.92;SAR=1;SRF=1242;SRP=2699.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:88:46,42:46:1632:42:1472:-106.28,0,-120.675	1/1:45:0,45:0:0:45:1575:-142.037,-13.5464,0	0/1:84:50,34:50:1762:34:1216:-84.46,0,-133.575	1/1:132:0,132:0:0:132:4690:-422.26,-39.736,0	0/1:15:8,7:8:275:7:248:-18.1487,0,-20.568	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	1/1:46:0,46:0:0:46:1636:-147.529,-13.8474,0	0/1:76:38,38:38:1317:38:1356:-99.4622,0,-95.9463	0/1:69:19,50:19:667:50:1791:-140.701,0,-39.5836	0/1:46:27,19:27:964:19:684:-48.0429,0,-73.2294	0/1:42:22,20:22:771:20:720:-52.4855,0,-57.067	1/1:49:0,49:0:0:49:1737:-156.612,-14.7505,0	0/1:49:25,24:25:892:24:856:-62.6106,0,-65.8492	0/1:46:24,22:24:834:22:788:-57.3974,0,-61.5282	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	0/1:34:14,20:14:500:20:716:-54.5327,0,-35.1012	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:28:0,28:0:0:28:982:-88.6917,-8.42884,0	1/1:107:0,107:0:0:107:3833:-345.164,-32.2102,0	0/1:112:57,55:57:1994:55:1948:-141.878,0,-146.015	1/1:84:0,84:0:0:84:2991:-269.421,-25.2865,0	0/1:85:47,38:47:1658:38:1334:-94.751,0,-123.919	0/1:36:24,12:24:841:12:432:-28.3841,0,-65.1693	0/1:77:37,39:37:1306:39:1388:-102.137,0,-94.7577	1/1:193:0,193:0:0:193:6870:-618.37,-58.0988,0	1/1:149:0,149:0:0:149:5313:-478.306,-44.8535,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:157:74,83:74:2621:83:2959:-219.282,0,-188.875	0/1:84:48,36:48:1704:36:1281:-90.3061,0,-128.359	1/1:73:0,73:0:0:73:2564:-231.009,-21.9752,0	0/1:6:2,4:2:72:4:135:-10.6763,0,-5.03054	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:17:11,6:11:396:6:214:-14.4903,0,-30.8652	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:118:66,52:66:2356:52:1848:-131.079,0,-176.777	1/1:117:0,117:0:0:117:4164:-374.943,-35.2205,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:77:0,77:0:0:77:2710:-244.142,-23.1793,0	1/1:29:0,29:0:0:29:1029:-92.922,-8.72987,0	0/1:107:70,37:70:2503:37:1315:-86.4408,0,-193.312	0/1:19:13,6:13:453:6:207:-13.2473,0,-35.3801	0/1:33:22,11:22:788:11:392:-25.6861,0,-61.3108	0/1:142:74,68:74:2638:68:2427:-175.939,0,-194.92	0/1:79:33,46:33:1133:46:1615:-121.854,0,-78.4887	1/1:96:1,95:1:21:95:3392:-303.395,-26.7989,0	1/1:64:0,64:0:0:64:2260:-203.662,-19.2659,0	0/1:67:39,28:39:1400:28:1008:-70.8673,0,-106.13	0/1:69:41,28:41:1448:28:996:-69.1838,0,-109.842	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	1/1:66:0,64:0:0:64:2266:-203.841,-19.2659,0	1/1:37:0,37:0:0:37:1309:-118.11,-11.1381,0	1/1:10:0,10:0:0:10:345:-31.3817,-3.0103,0	0/1:63:31,32:31:1108:32:1136:-83.584,0,-81.0661	1/1:29:0,29:0:0:29:1031:-93.1026,-8.72987,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:19:6,13:6:216:13:464:-36.3779,0,-14.0709	0/1:100:58,42:58:2076:42:1500:-105.192,0,-157.008	1/1:74:0,74:0:0:74:2609:-235.058,-22.2762,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:97:0,97:0:0:97:3459:-311.522,-29.1999,0	1/1:134:1,133:1:36:133:4711:-420.552,-36.7397,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:101:1,99:1:36:99:3531:-314.475,-26.7896,0	1/1:126:1,125:1:32:125:4464:-398.73,-34.7305,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:23:1,22:1:36:22:775:-66.244,-3.32542,0	1/1:41:0,41:0:0:41:1451:-130.885,-12.3422,0	0/1:27:12,15:12:424:15:540:-40.8087,0,-30.3686	1/1:181:0,181:0:0:181:6442:-579.868,-54.4864,0	0/1:53:28,25:28:1004:25:876:-63.2002,0,-74.7213	0/1:95:39,56:39:1400:56:1997:-151.405,0,-97.7013	1/1:52:0,52:0:0:52:1834:-165.338,-15.6536,0	1/1:116:0,116:0:0:116:4140:-372.785,-34.9195,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	0/1:16:9,7:9:315:7:252:-18.2125,0,-23.8707	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	1/1:87:0,87:0:0:87:3107:-279.857,-26.1896,0	1/1:207:0,207:0:0:207:7362:-662.474,-62.3132,0	1/1:51:0,51:0:0:51:1811:-163.271,-15.3525,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:14:9,5:9:312:5:180:-12.3376,0,-24.2009	1/1:81:3,78:3:108:78:2769:-239.375,-14.3083,0	0/1:6:4,2:4:140:2:68:-4.65153,0,-11.1384	1/1:45:0,45:0:0:45:1607:-144.729,-13.5464,0	1/1:42:0,42:0:0:42:1491:-134.484,-12.6433,0	1/1:17:0,17:0:0:17:587:-53.1539,-5.11751,0	0/1:87:46,41:46:1617:41:1451:-104.696,0,-119.627	0/1:35:28,6:28:978:6:212:-8.8651,0,-77.7752	1/1:67:0,67:0:0:67:2357:-212.387,-20.169,0	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0
chr06	5171196	.	G	A	114661	PASS	AB=0.511204;ABP=5.346;AC=140;AF=0.76087;AN=184;AO=5257;CIGAR=1X;DP=6330;DPB=6330;DPRA=15.9394;EPP=11418.4;EPPR=2315.66;GTI=5;LEN=1;MEANALT=1;MQM=59.9566;MQMR=59.8947;NS=92;NUMALT=1;ODDS=4.28771;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188208;QR=38157;RO=1073;RPL=5257;RPP=11418.4;RPPR=2315.66;RPR=0;RUN=1;SAF=0;SAP=11418.4;SAR=5257;SRF=0;SRP=2333;SRR=1073;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/1:76:32,44:32:1136:44:1584:-119.973,0,-79.6706	1/1:255:1,254:1:36:254:9092:-814.739,-73.26,0	0/1:29:6,23:6:212:23:828:-66.1142,0,-10.6949	0/1:45:20,25:20:716:25:900:-67.7747,0,-51.2214	1/1:91:0,91:0:0:91:3257:-293.349,-27.3937,0	0/1:154:62,92:62:2216:92:3304:-251.219,0,-153.119	0/1:51:27,24:27:968:24:860:-62.3693,0,-72.0848	0/1:43:28,15:28:1008:15:540:-35.9922,0,-78.0897	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0673	1/1:34:0,34:0:0:34:1209:-108.623,-10.235,0	0/1:33:20,13:20:716:13:468:-32.5223,0,-54.8337	0/1:31:18,13:18:639:13:468:-33.1277,0,-48.5063	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:21:14,7:14:500:7:252:-16.7073,0,-39.0145	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:92:0,92:0:0:92:3280:-295.419,-27.6948,0	0/1:77:46,31:46:1640:31:1108:-76.8517,0,-124.709	1/1:82:0,82:0:0:82:2928:-263.754,-24.6845,0	0/1:49:26,23:26:932:23:824:-59.7328,0,-69.446	0/1:38:23,15:23:816:15:540:-37.4974,0,-62.3207	0/1:80:39,41:39:1384:41:1476:-109.054,0,-100.776	1/1:303:1,302:1:36:302:10780:-966.274,-87.6138,0	1/1:163:0,163:0:0:163:5810:-523.013,-49.0679,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:209:99,110:99:3528:110:3928:-290.795,0,-254.814	0/1:128:63,65:63:2232:65:2336:-171.967,0,-162.565	1/1:137:0,137:0:0:137:4919:-442.844,-41.2411,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:127:65,62:65:2303:62:2205:-160.483,0,-169.296	1/1:170:0,170:0:0:170:6100:-549.09,-51.1751,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:182:0,182:0:0:182:6528:-587.602,-54.7875,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:65:28,37:28:996:37:1328:-100.255,0,-70.3879	0/1:26:10,16:10:351:16:576:-44.3482,0,-24.0999	0/1:37:21,16:21:744:16:576:-41.0369,0,-56.1462	0/1:42:22,20:22:783:20:720:-52.4855,0,-58.1497	0/1:135:75,60:75:2632:60:2152:-153.303,0,-196.488	1/1:227:0,227:0:0:227:8127:-731.211,-68.3338,0	1/1:118:0,118:0:0:118:4208:-378.897,-35.5215,0	0/1:98:47,51:47:1669:51:1827:-135.209,0,-120.994	0/1:95:36,59:36:1284:59:2124:-162.83,0,-87.2656	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:127:0,127:0:0:127:4558:-410.38,-38.2308,0	1/1:32:0,32:0:0:32:1152:-103.989,-9.63296,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5505	0/1:80:44,36:44:1552:36:1292:-92.5014,0,-115.889	1/1:90:0,90:0:0:90:3181:-286.511,-27.0927,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39156	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:84:35,49:35:1256:49:1736:-131.106,0,-88.0542	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:183:1,182:1:36:182:6517:-583.013,-51.4902,0	1/1:168:2,166:2:72:166:5964:-530.023,-43.7363,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:77:0,77:0:0:77:2741:-246.931,-23.1793,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	1/1:64:0,64:0:0:64:2297:-206.991,-19.2659,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:65:0,65:0:0:65:2321:-209.148,-19.567,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	1/1:93:0,93:0:0:93:3320:-299.018,-27.9958,0	0/1:24:18,6:18:629:6:216:-12.5658,0,-49.7091	0/1:92:33,59:33:1167:59:2107:-162.204,0,-77.6416	1/1:138:0,138:0:0:138:4933:-444.117,-41.5421,0	1/1:67:0,67:0:0:67:2389:-215.266,-20.169,0	1/1:87:1,86:1:36:86:3092:-274.909,-22.5913,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	1/1:100:1,99:1:36:99:3509:-312.418,-26.5047,0	1/1:91:0,91:0:0:91:3261:-293.7,-27.3937,0	1/1:87:0,87:0:0:87:3124:-281.383,-26.1896,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:30:17,13:17:600:13:464:-33.0666,0,-45.295	1/1:57:1,56:1:32:56:2000:-177.074,-13.9594,0	0/1:34:12,22:12:432:22:788:-61.0098,0,-28.9862	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:27:16,11:16:576:11:392:-27.4922,0,-44.0468	0/1:29:19,10:19:680:10:356:-23.6514,0,-52.7993	1/1:52:0,52:0:0:52:1864:-168.037,-15.6536,0	1/1:33:0,33:0:0:33:1184:-106.866,-9.93399,0
chr06	5171226	.	A	G	26921.1	PASS	AB=0.557189;ABP=82.2398;AC=44;AF=0.234043;AN=188;AO=1559;CIGAR=1X;DP=6235;DPB=6235;DPRA=0.928376;EPP=3388.34;EPPR=10152.5;GTI=0;LEN=1;MEANALT=1.02083;MQM=59.4529;MQMR=59.3246;NS=94;NUMALT=1;ODDS=9.95389;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55656;QR=167461;RO=4674;RPL=0;RPP=3388.34;RPPR=10152.5;RPR=1559;RUN=1;SAF=1559;SAP=3388.34;SAR=0;SRF=4674;SRP=10152.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:25,36:25:900:36:1288:-97.8536,0,-62.9418	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.974	0/1:113:50,63:50:1785:63:2237:-167.533,0,-126.882	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.566	0/1:50:20,30:20:720:30:1061:-80.6781,0,-50.068	0/1:50:22,28:22:788:28:1008:-75.8846,0,-56.1933	0/0:74:74,0:74:2664:0:0:0,-22.2762,-239.973	0/1:118:65,53:65:2332:53:1885:-134.315,0,-174.174	0/1:95:44,51:44:1561:51:1817:-134.868,0,-112.152	0/1:59:28,31:28:1004:31:1112:-82.6199,0,-72.7321	0/1:42:18,24:18:639:24:864:-65.4384,0,-45.0306	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.124	0/1:49:24,25:24:864:25:885:-65.2151,0,-63.3239	0/1:60:29,31:29:1044:31:1101:-81.3157,0,-76.0785	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.723	0/1:53:32,21:32:1148:21:756:-52.2744,0,-87.666	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.674	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:142:142,0:142:5093:0:0:0,-42.7463,-458.328	0/1:80:42,38:42:1512:38:1364:-98.7507,0,-112.246	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.101	0/1:81:34,47:34:1186:47:1688:-127.792,0,-82.644	0/1:71:42,29:42:1497:29:1040:-72.485,0,-113.645	0/1:77:41,36:41:1457:36:1285:-92.753,0,-108.159	0/0:129:129,0:129:4629:0:0:0,-38.8329,-416.457	0/0:148:148,0:148:5290:0:0:0,-44.5524,-476.135	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.787	0/1:119:47,72:47:1692:72:2588:-197.306,0,-116.127	0/1:79:28,51:28:1008:51:1817:-140.028,0,-67.187	0/0:47:45,2:45:1601:2:72:0,-7.31169,-137.32	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6957	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:21:4,17:4:144:17:608:-48.7127,0,-6.99199	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.73	0/1:181:87,94:87:3120:94:3346:-246.772,0,-225.812	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.779	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.268	0/1:14:3,11:3:108:11:387:-30.9515,0,-5.85599	0/0:56:56,0:56:1986:0:0:0,-16.8577,-178.997	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.506	0/1:150:64,86:64:2289:86:3096:-233.69,0,-161.087	0/1:42:18,24:18:648:24:849:-64.0842,0,-45.5681	0/1:52:26,26:26:932:26:924:-67.7691,0,-68.5453	0/1:99:40,59:40:1440:59:2101:-159.556,0,-100.079	0/1:111:56,55:56:2012:55:1972:-144.292,0,-147.897	0/0:130:130,0:130:4634:0:0:0,-39.1339,-415.997	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.441	0/1:44:15,29:15:536:29:1025:-79.3154,0,-35.3109	0/1:113:45,68:45:1601:68:2436:-185.43,0,-110.354	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343	0/0:37:37,0:37:1332:0:0:0,-11.1381,-119.98	0/1:18:11,7:11:396:7:237:-16.2396,0,-30.5441	0/1:97:30,67:30:1080:67:2404:-187.392,0,-68.2653	0/0:68:67,0:67:2408:0:0:0,-20.169,-215.715	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/1:73:25,48:25:896:48:1720:-133.032,0,-58.9356	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.415	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.404	0/0:92:91,1:91:3276:1:36:0,-24.0965,-291.362	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.329	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6697	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.943	0/0:112:111,1:111:3973:1:36:0,-30.1171,-354.041	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.706	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.408	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.199	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/0:106:106,0:106:3789:0:0:0,-31.9092,-340.547	0/1:61:32,29:32:1148:29:1010:-72.8442,0,-85.2369	0/1:98:37,60:37:1324:60:2152:-164.527,0,-89.9942	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.712	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.729	0/0:87:87,0:87:3109:0:0:0,-26.1896,-279.991	0/1:24:10,14:10:360:14:498:-37.5921,0,-25.3279	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.572	0/0:42:42,0:42:1482:0:0:0,-12.6433,-133.443	0/0:147:147,0:147:5265:0:0:0,-44.2514,-473.941	0/0:47:47,0:47:1676:0:0:0,-14.1484,-150.961	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.254	0/1:31:15,16:15:540:16:576:-42.8431,0,-38.9616	0/0:112:112,0:112:4032:0:0:0,-33.7154,-362.495	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	0/0:77:77,0:77:2749:0:0:0,-23.1793,-247.598	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.104	0/0:28:27,1:27:957:1:36:0,-4.97435,-82.9812	0/1:121:47,74:47:1692:74:2633:-200.782,0,-115.502	0/1:84:30,54:30:1080:54:1914:-147.225,0,-72.2267	0/0:52:52,0:52:1860:0:0:0,-15.6536,-166.955	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.85
chr06	5171245	.	AAA	GAC,GAA	149700	PASS	AB=0.442245,0.553077;ABP=83.5251,71.0104;AC=144,44;AF=0.765957,0.234043;AN=188;AO=4652,1540;CIGAR=1X1M1X,1X2M;DP=6233;DPB=6233;DPRA=0,0.945381;EPP=5501.07,1222.56;EPPR=7.35324;GTI=0;LEN=3,1;MEANALT=1.8617,2.2766;MQM=59.3699,59.5227;MQMR=60;NS=94;NUMALT=2;ODDS=9.71661;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=158760,55001;QR=72;RO=2;RPL=4042,1235;RPP=5501.07,1222.56;RPPR=7.35324;RPR=610,305;RUN=1,1;SAF=4652,1540;SAP=10104.7,3347.08;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:60:0,25,35:0:0:25,35:861,1247:-171.915,-101.989,-94.4629,-70.2753,0,-59.7392	1/1:32:0,31,0:0:0:31,0:1038,0:-93.4974,-9.33193,0,-93.4974,-9.33193,-93.4974	1/2:112:0,49,62:0:0:49,62:1685,2200:-316.171,-179.344,-164.594,-136.961,0,-118.298	1/1:93:0,90,0:0:0:90,0:3014,0:-271.235,-27.0927,0,-271.235,-27.0927,-271.235	1/2:49:0,20,29:0:0:20,29:683,1040:-140.528,-85.1147,-79.0941,-55.7619,0,-47.032	1/2:48:0,22,26:0:0:22,26:771,927:-138.634,-75.8983,-69.2756,-63.0884,0,-55.2617	1/1:74:0,74,0:0:0:74,0:2553,0:-229.995,-22.2762,0,-229.995,-22.2762,-229.995	1/2:116:0,64,52:0:0:64,52:2119,1868:-323.936,-152.645,-133.379,-171.637,0,-155.984	1/2:95:0,43,51:0:0:43,51:1482,1820:-268.776,-148.417,-135.473,-120.427,0,-105.075	1/2:59:0,27,31:0:0:27,31:892,1098:-161.679,-89.5794,-81.4516,-72.2239,0,-62.8919	1/2:44:0,17,26:0:0:17,26:585,923:-122.717,-75.2162,-70.0987,-47.5063,0,-39.6796	1/1:96:0,94,0:0:0:94,0:3177,0:-285.783,-28.2968,0,-285.783,-28.2968,-285.783	1/2:49:0,24,25:0:0:24,25:807,887:-137.99,-72.6215,-65.3967,-65.7135,0,-58.1877	1/2:60:0,29,31:0:0:29,31:986,1090:-169.016,-89.0666,-80.3367,-80.2945,0,-70.9625	1/1:61:0,61,0:0:0:61,0:2111,0:-190.219,-18.3628,0,-190.219,-18.3628,-190.219	1/2:53:0,32,21:0:0:32,21:1114,747:-151.666,-61.0944,-51.4614,-90.9232,0,-84.6016	1/1:35:0,35,0:0:0:35,0:1210,0:-109.196,-10.5361,0,-109.196,-10.5361,-109.196	1/1:21:0,21,0:0:0:21,0:724,0:-65.479,-6.32163,0,-65.479,-6.32163,-65.479	1/1:30:0,30,0:0:0:30,0:1020,0:-92.1041,-9.0309,0,-92.1041,-9.0309,-92.1041	1/1:142:0,142,0:0:0:142,0:4803,0:-432.269,-42.7463,0,-432.269,-42.7463,-432.269	1/2:80:0,42,38:0:0:42,38:1407,1360:-224.934,-111.034,-98.3906,-114.247,0,-102.808	1/1:106:0,105,0:0:0:105,0:3605,0:-324.379,-31.6082,0,-324.379,-31.6082,-324.379	1/2:81:0,33,47:0:0:33,47:1114,1688:-228.021,-137.745,-127.811,-90.34,0,-76.1916	1/2:71:0,42,29:0:0:42,29:1390,1040:-197.518,-85.1234,-72.4801,-112.741,0,-104.011	1/2:77:0,41,36:0:0:41,36:1363,1296:-216.329,-106.087,-93.7449,-110.589,0,-99.7517	1/1:129:0,129,0:0:0:129,0:4479,0:-403.021,-38.8329,0,-403.021,-38.8329,-403.021	1/1:149:0,149,0:0:0:149,0:5138,0:-462.494,-44.8535,0,-462.494,-44.8535,-462.494	1/1:47:0,47,0:0:0:47,0:1618,0:-145.895,-14.1484,0,-145.895,-14.1484,-145.895	1/2:120:0,47,73:0:0:47,73:1653,2590:-345.281,-211.336,-197.188,-134.297,0,-112.322	1/2:78:0,28,50:0:0:28,50:977,1783:-225.14,-145.701,-137.272,-79.7909,0,-64.7394	1/1:45:0,44,1:0:0:44,1:1475,36:-132.591,-13.2453,0,-129.653,-9.94808,-129.352	1/2:10:0,7,3:0:0:7,3:247,99:-28.4627,-8.33349,-6.22628,-20.466,0,-19.5629	1/1:15:0,15,0:0:0:15,0:479,0:-43.4153,-4.51545,0,-43.4153,-4.51545,-43.4153	1/2:8:0,2,6:0:0:2,6:72,216:-23.8592,-17.9843,-17.3823,-6.23466,0,-4.42848	1/2:21:0,4,17:0:0:4,17:139,604:-60.8547,-49.5554,-48.3513,-11.6481,0,-6.53058	1/1:31:0,30,0:0:0:30,0:1020,0:-91.8206,-9.0309,0,-91.8206,-9.0309,-91.8206	1/2:180:0,86,93:0:0:86,93:2981,3332:-513.784,-271.645,-245.757,-242.26,0,-214.264	1/1:110:0,110,0:0:0:110,0:3748,0:-337.372,-33.1133,0,-337.372,-33.1133,-337.372	1/1:45:0,45,0:0:0:45,0:1572,0:-141.738,-13.5464,0,-141.738,-13.5464,-141.738	1/2:14:0,3,11:0:0:3,11:107,388:-40.6658,-31.946,-31.0429,-9.07529,0,-5.76396	1/1:57:0,57,0:0:0:57,0:1921,0:-173.142,-17.1587,0,-173.142,-17.1587,-173.142	1/1:42:0,42,0:0:0:42,0:1446,0:-130.29,-12.6433,0,-130.29,-12.6433,-130.29	1/2:149:0,62,85:0:0:62,85:2085,3043:-417.066,-248.169,-229.505,-168.922,0,-143.334	1/2:42:0,19,23:0:0:19,23:615,824:-117.048,-67.5596,-61.8401,-49.8269,0,-42.9032	1/2:51:0,26,24:0:0:26,24:875,860:-141.056,-70.1727,-62.346,-70.9476,0,-63.7229	1/2:101:0,41,60:0:0:41,60:1395,2152:-289.012,-175.877,-163.535,-113.482,0,-95.4205	1/2:112:1,57,54:1:36:57,54:1943,1928:-311.467,-154.165,-139.944,-154.655,0,-141.337	1/1:130:0,130,0:0:0:130,0:4409,0:-396.795,-39.1339,0,-396.795,-39.1339,-396.795	1/1:75:0,74,0:0:0:74,0:2509,0:-225.832,-22.2762,0,-225.832,-22.2762,-225.832	1/2:45:0,16,29:0:0:16,29:533,1035:-127.853,-84.7332,-79.9167,-43.4608,0,-34.731	1/2:112:0,45,67:0:0:45,67:1564,2404:-323.541,-196.398,-182.852,-127.494,0,-107.325	1/2:4:0,1,3:0:0:1,3:28,108:-11.3708,-9.17208,-8.87105,-2.4987,0,-1.59561	1/1:107:0,105,0:0:0:105,0:3579,0:-321.599,-31.6082,0,-321.599,-31.6082,-321.599	1/1:37:0,36,0:0:0:36,0:1207,0:-108.527,-10.8371,0,-108.527,-10.8371,-108.527	1/2:18:1,11,6:1:36:11,6:371,216:-44.4168,-14.6862,-14.3123,-27.0862,0,-28.2194	1/2:97:0,29,68:0:0:29,68:1029,2419:-281.261,-197.47,-188.74,-84.1462,0,-63.6762	1/1:67:0,65,0:0:0:65,0:2170,0:-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chr06	5171320	.	T	A	22409.6	PASS	AB=0.500707;ABP=3.02258;AC=46;AF=0.247312;AN=186;AO=1433;CIGAR=1X;DP=7270;DPB=7270;DPRA=0.919936;EPP=3114.73;EPPR=12673.6;GTI=6;LEN=1;MEANALT=1.01961;MQM=59.9819;MQMR=59.9928;NS=93;NUMALT=1;ODDS=1.22709;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49677;QR=204025;RO=5835;RPL=0;RPP=3114.73;RPPR=12673.6;RPR=1433;RUN=1;SAF=0;SAP=3114.73;SAR=1433;SRF=0;SRP=12673.6;SRR=5835;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:12,11:12:406:11:383:-27.8796,0,-29.9405	0/0:101:101,0:101:3547:0:0:0,-30.404,-319.444	0/1:116:64,52:64:2233:52:1816:-128.8,0,-166.314	0/0:133:132,1:132:4623:1:36:0,-36.4387,-412.646	0/1:80:42,38:42:1445:38:1320:-95.017,0,-106.26	0/1:16:5,11:5:180:11:368:-28.6246,0,-11.7356	0/0:90:90,0:90:3118:0:0:0,-27.0927,-280.854	0/1:100:50,50:50:1760:50:1742:-126.96,0,-128.581	0/1:43:28,15:28:980:15:532:-35.2688,0,-75.5686	0/1:61:23,38:23:785:38:1307:-99.5627,0,-52.6007	0/1:34:22,12:22:764:12:411:-27.0829,0,-58.8417	0/0:77:77,0:77:2723:0:0:0,-23.1793,-245.315	0/1:59:37,22:37:1315:22:776:-52.4014,0,-100.89	0/1:77:45,32:45:1574:32:1123:-78.1978,0,-118.77	0/0:59:59,0:59:2096:0:0:0,-17.7608,-188.91	0/1:42:26,16:26:912:16:559:-37.9943,0,-69.7526	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.462	0/0:50:50,0:50:1751:0:0:0,-15.0515,-157.873	0/0:38:38,0:38:1334:0:0:0,-11.4391,-120.358	0/0:200:199,1:199:6963:1:27:0,-57.5062,-624.054	0/1:109:52,57:52:1787:57:1958:-143.681,0,-128.297	0/0:112:112,0:112:3840:0:0:0,-33.7154,-345.808	0/1:24:17,7:17:600:7:244:-15.0747,0,-47.1045	0/1:124:74,50:74:2599:50:1705:-116.399,0,-195.47	0/1:53:23,30:23:795:30:1027:-76.7799,0,-55.9122	0/0:221:221,0:221:7722:0:0:0,-66.5276,-695.031	0/0:141:141,0:141:4930:0:0:0,-42.4452,-443.86	0/0:20:20,0:20:700:0:0:0,-6.0206,-63.3235	0/1:198:113,85:113:3995:85:2941:-205.322,0,-300.14	0/1:144:67,77:67:2367:77:2682:-198.272,0,-169.941	0/0:144:142,2:142:4948:2:68:0,-36.8906,-439.023	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	.:.:.:.:.:.:.:.	0/1:6:2,4:2:63:4:144:-11.5074,0,-4.17697	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/1:238:98,140:98:3482:140:4897:-369.245,0,-241.947	0/0:145:145,0:145:5040:0:0:0,-43.6493,-453.762	0/0:46:46,0:46:1594:0:0:0,-13.8474,-143.748	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:121:121,0:121:4234:0:0:0,-36.4246,-381.249	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:124:59,65:59:2076:65:2261:-166.423,0,-149.784	0/1:75:36,39:36:1263:39:1371:-101.111,0,-91.3945	0/1:60:31,29:31:1100:29:1011:-73.2386,0,-81.2485	0/1:36:12,24:12:424:24:840:-65.0811,0,-27.6593	0/1:151:72,79:72:2479:79:2747:-202.018,0,-177.91	0/0:195:192,1:192:6711:1:32:0,-55.2327,-600.859	0/0:69:69,0:69:2383:0:0:0,-20.7711,-214.728	0/1:125:59,66:59:2032:66:2253:-165.401,0,-145.523	0/1:107:49,58:49:1679:58:1957:-144.193,0,-119.183	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:127:127,0:127:4440:0:0:0,-38.2308,-399.78	0/0:22:22,0:22:752:0:0:0,-6.62266,-67.9941	0/1:10:5,5:5:176:5:176:-13.1747,0,-13.1747	0/1:87:45,42:45:1560:42:1458:-105.323,0,-114.501	0/0:44:44,0:44:1543:0:0:0,-13.2453,-139.161	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:9:6,3:6:208:3:104:-6.99354,0,-16.3498	0/1:37:23,14:23:799:14:472:-31.6619,0,-61.0895	0/0:123:123,0:123:4334:0:0:0,-37.0267,-390.242	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:120:120,0:120:4220:0:0:0,-36.1236,-379.989	0/0:188:188,0:188:6600:0:0:0,-56.5936,-594.095	0/0:32:32,0:32:1132:0:0:0,-9.63296,-102.189	0/0:62:62,0:62:2171:0:0:0,-18.6639,-195.657	0/0:108:106,2:106:3679:2:72:0,-25.6745,-324.484	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2068	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:57:57,0:57:1944:0:0:0,-17.1587,-175.235	0/0:92:92,0:92:3286:0:0:0,-27.6948,-295.959	0/1:10:4,6:4:144:6:199:-15.2252,0,-10.3033	0/0:104:104,0:104:3632:0:0:0,-31.3071,-327.091	0/1:39:18,21:18:632:21:727:-54.0093,0,-45.4666	0/1:98:51,47:51:1784:47:1619:-116.494,0,-131.342	0/0:125:125,0:125:4359:0:0:0,-37.6287,-392.494	0/0:102:102,0:102:3567:0:0:0,-30.7051,-321.242	0/0:91:90,1:90:3162:1:32:0,-24.1944,-281.609	0/1:7:2,5:2:72:5:157:-12.3323,0,-4.72951	0/0:98:98,0:98:3371:0:0:0,-29.5009,-303.615	0/0:84:84,0:84:2934:0:0:0,-25.2865,-264.296	0/0:128:127,1:127:4388:1:36:0,-34.9336,-391.507	0/0:89:89,0:89:3144:0:0:0,-26.7917,-283.186	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/1:109:51,58:51:1772:58:2042:-151.237,0,-126.948	0/0:138:138,0:138:4830:0:0:0,-41.5421,-434.863	0/1:49:24,25:24:856:25:871:-63.955,0,-62.6106	0/0:73:73,0:73:2549:0:0:0,-21.9752,-229.662	0/0:88:88,0:88:3103:0:0:0,-26.4906,-279.5	0/0:23:23,0:23:807:0:0:0,-6.92369,-72.9492	0/1:75:34,41:34:1181:41:1410:-104.614,0,-84.015	0/1:57:21,36:21:748:36:1268:-97.264,0,-50.4866	0/0:97:97,0:97:3365:0:0:0,-29.1999,-303.074	0/0:88:88,0:88:3088:0:0:0,-26.4906,-278.15
chr06	5187963	.	T	C	25067	PASS	AB=0.505106;ABP=3.67549;AC=45;AF=0.241935;AN=186;AO=1500;CIGAR=1X;DP=7201;DPB=7201;DPRA=0.928386;EPP=3260.22;EPPR=12378.2;GTI=2;LEN=1;MEANALT=1;MQM=59.986;MQMR=59.9835;NS=93;NUMALT=1;ODDS=2.30501;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53664;QR=204225;RO=5699;RPL=0;RPP=3260.22;RPPR=12378.2;RPR=1500;RUN=1;SAF=1500;SAP=3260.22;SAR=0;SRF=5699;SRP=12378.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:18,42:18:648:42:1499:-117.142,0,-40.5901	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:92:33,59:33:1184:59:2104:-161.935,0,-79.1736	0/0:142:142,0:142:5077:0:0:0,-42.7463,-457.072	0/1:16:5,11:5:180:11:388:-30.4409,0,-11.7356	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.264	0/1:104:47,57:47:1688:57:2037:-152.294,0,-120.9	0/1:93:59,34:59:2104:34:1224:-82.4713,0,-161.633	0/1:85:47,38:47:1688:38:1347:-95.9416,0,-126.619	0/1:87:46,41:46:1648:41:1472:-106.587,0,-122.419	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.372	0/1:88:47,41:47:1688:41:1468:-105.925,0,-125.716	0/1:94:51,43:51:1819:43:1530:-109.695,0,-135.694	0/0:81:81,0:81:2903:0:0:0,-24.3834,-261.504	0/1:57:30,27:30:1076:27:972:-70.6392,0,-79.9941	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:123:67,56:67:2400:56:1993:-142.617,0,-179.23	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:120:62,58:62:2228:58:2072:-150.627,0,-164.66	0/1:74:36,38:36:1292:38:1356:-100.064,0,-94.3075	0/1:48:20,28:20:705:28:1004:-76.2264,0,-49.3233	0/0:216:216,0:216:7736:0:0:0,-65.0225,-696.272	0/0:165:163,2:163:5848:2:72:0,-42.8332,-519.593	0/0:48:47,0:47:1679:0:0:0,-14.1484,-151.183	0/1:177:88,89:88:3145:89:3200:-234.94,0,-229.992	0/1:102:43,59:43:1548:59:2116:-159.999,0,-108.908	0/0:100:97,3:97:3467:3:108:0,-20.0278,-302.148	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:162:91,71:91:3253:71:2536:-179.724,0,-244.223	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.217	0/0:64:64,0:64:2295:0:0:0,-19.2659,-206.81	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:156:155,1:155:5552:1:36:0,-43.3624,-496.206	0/0:38:37,1:37:1332:1:36:0,-7.84086,-116.584	0/1:138:56,82:56:2012:82:2933:-222.661,0,-139.811	0/1:53:24,29:24:864:29:1036:-77.5993,0,-62.128	0/1:64:30,34:30:1080:34:1220:-90.8409,0,-78.2473	0/1:87:48,39:48:1720:39:1390:-99.2084,0,-128.896	0/1:66:45,21:45:1616:21:743:-47.3206,0,-125.862	0/0:151:151,0:151:5413:0:0:0,-45.4555,-487.292	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:70:45,25:45:1612:25:896:-59.8883,0,-124.298	0/1:67:31,36:31:1112:36:1292:-96.4148,0,-80.2223	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.608	0/1:5:2,3:2:72:3:99:-7.73143,0,-5.33157	0/1:105:59,46:59:2116:46:1650:-117.18,0,-159.101	0/0:51:50,0:50:1784:0:0:0,-15.0515,-160.63	0/1:12:2,10:2:72:10:356:-28.7689,0,-3.22436	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:88:44,44:44:1584:44:1572:-115.281,0,-116.361	0/0:126:126,0:126:4528:0:0:0,-37.9298,-407.685	.:.:.:.:.:.:.:.	0/0:158:158,0:158:5653:0:0:0,-47.5627,-508.888	0/0:119:118,1:118:4224:1:36:0,-32.2243,-376.742	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:53:53,0:53:1862:0:0:0,-15.9546,-167.856	0/0:145:145,0:145:5147:0:0:0,-43.6493,-463.371	0/0:122:122,0:122:4388:0:0:0,-36.7257,-395.091	0/0:74:73,1:73:2615:1:36:0,-18.6779,-231.999	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:29:18,11:18:640:11:396:-27.2529,0,-49.1994	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/1:76:34,42:34:1216:42:1512:-113.496,0,-86.8683	0/1:151:85,66:85:3014:66:2372:-168.282,0,-226.034	0/0:119:119,0:119:4260:0:0:0,-35.8226,-383.579	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:102:102,0:102:3653:0:0:0,-30.7051,-328.972	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:124:124,0:124:4421:0:0:0,-37.3277,-398.062	0/0:62:61,1:61:2192:1:36:0,-15.0656,-193.947	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.935	0/1:64:34,30:34:1224:30:1056:-76.0831,0,-91.2011	0/0:159:158,1:158:5680:1:36:0,-44.2655,-507.718	0/1:35:13,22:13:468:22:792:-61.0696,0,-31.9236	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.491	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.482	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.376	0/1:95:40,55:40:1431:55:1971:-149.066,0,-100.489	0/1:80:18,62:18:644:62:2224:-176.342,0,-34.2082	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:121:121,0:121:4348:0:0:0,-36.4246,-391.493
chr06	5187970	.	A	G	120858	PASS	AB=0.49201;ABP=4.6413;AC=141;AF=0.758065;AN=186;AO=5656;CIGAR=1X;DP=7166;DPB=7166;DPRA=31.4769;EPP=12284.9;EPPR=3275.42;GTI=2;LEN=1;MEANALT=1.03297;MQM=59.9855;MQMR=59.9688;NS=93;NUMALT=1;ODDS=1.82735;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201690;QR=54023;RO=1507;RPL=0;RPP=12284.9;RPPR=3275.42;RPR=5656;RUN=1;SAF=5656;SAP=12284.9;SAR=0;SRF=1507;SRP=3275.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:42,18:42:1512:18:648:-40.5901,0,-118.313	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:93:59,34:59:2116:34:1212:-81.3612,0,-162.713	1/1:143:0,143:0:0:143:5100:-459.141,-43.0473,0	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:21:10,11:10:360:11:392:-29.2984,0,-26.4227	1/1:75:0,75:0:0:75:2653:-238.971,-22.5773,0	0/1:107:57,50:57:2048:50:1761:-126.561,0,-152.381	0/1:94:35,59:35:1252:59:2107:-161.601,0,-84.6883	0/1:85:38,47:38:1368:47:1669:-124.908,0,-97.8333	0/1:84:41,43:41:1472:43:1532:-112.887,0,-107.49	1/1:124:0,124:0:0:124:4395:-395.724,-37.3277,0	0/1:86:41,44:41:1461:44:1565:-115.192,0,-105.837	0/1:93:42,51:42:1504:51:1818:-135.905,0,-107.658	1/1:80:0,80:0:0:80:2840:-255.838,-24.0824,0	0/1:56:27,29:27:972:29:1032:-76.3352,0,-70.9402	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:119:56,63:56:2012:63:2245:-166.489,0,-145.531	1/1:37:0,37:0:0:37:1294:-116.757,-11.1381,0	0/1:118:58,60:58:2088:60:2144:-157.706,0,-152.668	0/1:75:39,36:39:1400:36:1296:-94.3667,0,-103.722	0/1:47:28,19:28:1008:19:676:-47.0196,0,-76.8879	1/1:214:0,214:0:0:214:7632:-686.918,-64.4204,0	1/1:163:2,161:2:72:161:5772:-512.757,-42.2312,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:178:89,89:89:3170:89:3175:-232.391,0,-231.938	0/1:102:59,43:59:2093:43:1525:-106.836,0,-157.931	1/1:99:3,96:3:108:96:3439:-299.647,-19.7268,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:13:6,7:6:216:7:244:-18.386,0,-15.8771	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:163:74,89:74:2660:89:3177:-237.085,0,-190.577	1/1:92:0,92:0:0:92:3296:-296.854,-27.6948,0	1/1:64:0,64:0:0:64:2277:-205.191,-19.2659,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:154:0,154:0:0:154:5488:-494.046,-46.3586,0	1/1:38:1,37:1:36:37:1312:-114.782,-7.84087,0	0/1:139:82,57:82:2948:57:2027:-140.858,0,-223.71	0/1:52:28,24:28:1004:24:860:-62.0683,0,-75.0223	0/1:66:36,30:36:1296:30:1054:-75.3003,0,-96.7052	0/1:86:38,48:38:1353:48:1714:-128.656,0,-96.1798	0/1:67:22,45:22:792:45:1607:-124.75,0,-51.4008	1/1:152:0,151:0:0:151:5415:-487.133,-45.4555,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:71:26,45:26:932:45:1620:-124.717,0,-62.8257	0/1:68:38,30:38:1345:30:1080:-77.0432,0,-100.878	0/1:7:4,3:4:140:3:104:-7.5956,0,-10.8374	1/1:52:0,52:0:0:52:1857:-167.408,-15.6536,0	1/1:45:0,45:0:0:45:1607:-144.919,-13.5464,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:107:47,60:47:1688:60:2133:-160.026,0,-119.997	1/1:51:0,51:0:0:51:1805:-162.731,-15.3525,0	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:89:41,48:41:1472:48:1697:-126.223,0,-105.984	1/1:123:0,123:0:0:123:4387:-395.004,-37.0267,0	.:.:.:.:.:.:.:.	1/1:155:0,155:0:0:155:5492:-494.406,-46.6597,0	1/1:121:1,120:1:36:120:4292:-382.859,-32.8264,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:141:0,141:0:0:141:5006:-450.688,-42.4452,0	1/1:120:1,119:1:36:119:4258:-379.8,-32.5253,0	1/1:74:0,74:0:0:74:2627:-236.678,-22.2762,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	0/1:76:42,34:42:1508:34:1205:-85.8765,0,-113.136	0/1:150:66,83:66:2364:83:2976:-222.859,0,-167.805	1/1:120:0,120:0:0:120:4293:-386.546,-36.1236,0	1/1:48:0,48:0:0:48:1707:-153.915,-14.4494,0	1/1:103:0,103:0:0:103:3653:-328.973,-31.0061,0	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	1/1:101:0,101:0:0:101:3567:-321.237,-30.404,0	1/1:95:0,95:0:0:95:3391:-305.405,-28.5979,0	1/1:123:0,123:0:0:123:4408:-396.89,-37.0267,0	1/1:59:1,58:1:36:58:2058:-181.889,-14.1625,0	1/1:90:0,90:0:0:90:3198:-288.043,-27.0927,0	0/1:64:30,34:30:1080:34:1207:-89.6694,0,-78.2473	1/1:151:1,150:1:36:150:5352:-478.214,-41.8573,0	0/1:35:22,13:22:792:13:468:-31.9236,0,-61.0696	1/1:64:0,64:0:0:64:2297:-206.986,-19.2659,0	1/1:75:0,75:0:0:75:2679:-241.355,-22.5773,0	1/1:65:0,65:0:0:65:2324:-209.416,-19.567,0	0/1:95:55,40:55:1976:40:1422:-99.6787,0,-149.517	0/1:79:62,17:62:2213:17:612:-31.6321,0,-175.652	1/1:88:0,88:0:0:88:3129:-281.836,-26.4906,0	1/1:121:0,121:0:0:121:4329:-389.784,-36.4246,0
chr06	5188031	.	CG	TG	15846.9	PASS	AB=0.39963;ABP=192.192;AC=41;AF=0.22043;AN=186;AO=873;CIGAR=1X1M;DP=6091;DPB=6091;DPRA=0.792281;EPP=423.179;EPPR=3060.11;GTI=6;LEN=1;MEANALT=1.13636;MQM=59.9679;MQMR=59.9879;NS=93;NUMALT=1;ODDS=1.46091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29848;QR=184115;RO=5205;RPL=642;RPP=423.179;RPPR=3064.63;RPR=231;RUN=1;SAF=0;SAP=1898.71;SAR=873;SRF=1;SRP=11296.8;SRR=5204;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:19,16:19:675:16:568:-40.9158,0,-50.5415	0/0:54:54,0:54:1900:0:0:0,-16.2556,-171.275	0/1:62:32,30:32:1099:30:999:-71.5454,0,-80.5486	0/0:199:199,0:199:7053:0:0:0,-59.905,-634.833	0/1:14:6,8:6:216:8:280:-21.3249,0,-15.5761	0/1:18:12,6:12:414:6:196:-12.5434,0,-32.1704	0/0:77:77,0:77:2732:0:0:0,-23.1793,-246.123	0/1:59:32,27:32:1122:27:948:-67.8739,0,-83.5242	0/1:82:49,28:49:1681:28:960:-63.1926,0,-128.05	0/1:60:43,17:43:1504:17:592:-35.5446,0,-117.588	0/1:39:25,14:25:895:14:460:-29.9741,0,-69.1299	0/0:116:116,0:116:4112:0:0:0,-34.9195,-370.264	0/1:74:52,22:52:1837:22:740:-44.6353,0,-143.333	0/1:67:33,34:33:1181:34:1189:-87.1439,0,-86.4291	0/0:75:75,0:75:2655:0:0:0,-22.5772,-239.194	0/1:61:35,26:35:1256:26:888:-61.8667,0,-94.9827	0/0:33:33,0:33:1152:0:0:0,-9.93399,-103.982	0/0:49:48,0:48:1722:0:0:0,-14.4494,-154.906	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:123:123,0:123:4389:0:0:0,-37.0267,-395.182	0/1:82:53,29:53:1880:29:974:-63.2786,0,-144.792	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:76:53,23:53:1872:23:804:-49.801,0,-145.879	0/1:25:15,10:15:523:10:329:-22.4028,0,-39.8724	0/1:34:23,11:23:817:11:388:-25.0223,0,-63.6158	0/0:154:154,0:154:5423:0:0:0,-46.3586,-488.204	0/0:152:152,0:152:5373:0:0:0,-45.7566,-483.704	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:154:99,55:99:3525:55:1905:-125.368,0,-271.101	0/1:48:30,18:30:1067:18:624:-42.0347,0,-81.8915	0/0:111:109,2:109:3801:2:72:0,-26.5776,-335.444	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:16:16,0:16:537:0:0:0,-4.81648,-48.6465	0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:9:9,0:9:300:0:0:0,-2.70927,-27.3221	0/1:171:105,64:105:3687:64:2208:-147.754,0,-280.8	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.167	0/0:34:34,0:34:1189:0:0:0,-10.235,-107.312	0/0:4:4,0:4:142:0:0:0,-1.20412,-13.1292	0/0:67:67,0:67:2390:0:0:0,-20.169,-215.357	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.392	0/1:77:37,40:37:1313:40:1381:-101.405,0,-95.2917	0/1:45:30,15:30:1080:15:513:-32.9465,0,-83.9669	0/1:41:28,13:28:1004:13:412:-25.0426,0,-78.3338	0/1:75:42,33:42:1475:33:1139:-80.2381,0,-110.465	0/1:49:26,23:26:903:23:786:-56.3012,0,-66.8308	0/0:122:121,0:121:4254:0:0:0,-36.4246,-382.681	0/0:79:79,0:79:2795:0:0:0,-23.7814,-251.788	0/1:79:41,38:41:1442:38:1313:-94.6859,0,-106.292	0/1:87:57,30:57:2031:30:1048:-68.4405,0,-156.872	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/0:76:76,0:76:2689:0:0:0,-22.8783,-242.252	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:94:59,34:59:2106:34:1139:-74.5966,0,-161.6	0/0:54:53,1:53:1868:1:32:0,-13.0563,-165.197	0/1:6:4,2:4:144:2:64:-3.98732,0,-11.5074	0/1:3:1,2:1:36:2:62:-4.98585,0,-2.69518	0/1:40:27,13:27:953:13:456:-29.332,0,-74.0429	0/0:65:64,1:64:2293:1:36:0,-15.9687,-203.033	.:.:.:.:.:.:.:.	0/0:141:140,0:140:4942:0:0:0,-42.1442,-444.71	0/0:106:106,0:106:3683:0:0:0,-31.9092,-331.673	0/0:41:40,0:40:1419:0:0:0,-12.0412,-127.646	0/0:61:61,0:61:2164:0:0:0,-18.3628,-195.026	0/0:135:135,0:135:4771:0:0:0,-40.639,-429.549	0/0:64:64,0:64:2244:0:0:0,-19.2659,-202.22	0/0:30:30,0:30:1048:0:0:0,-9.0309,-94.6277	0/0:46:46,0:46:1583:0:0:0,-13.8474,-142.755	0/0:39:39,0:39:1394:0:0:0,-11.7402,-125.759	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.122	0/1:62:40,22:40:1423:22:735:-47.7963,0,-109.703	0/1:134:65,69:65:2303:69:2304:-167.28,0,-167.192	0/0:139:139,0:139:4939:0:0:0,-41.8432,-444.66	0/0:37:37,0:37:1299:0:0:0,-11.1381,-117.209	0/0:70:70,0:70:2461:0:0:0,-21.0721,-221.742	0/1:8:6,2:6:211:2:68:-4.04947,0,-16.925	0/0:79:79,0:79:2801:0:0:0,-23.7814,-252.33	0/0:81:81,0:81:2875:0:0:0,-24.3834,-258.986	0/0:191:191,0:191:6772:0:0:0,-57.4967,-609.557	0/0:56:56,0:56:1985:0:0:0,-16.8577,-178.924	0/0:91:91,0:91:3242:0:0:0,-27.3937,-291.998	0/1:42:25,16:25:893:16:564:-38.3887,0,-67.9879	0/0:136:135,1:135:4723:1:32:0,-37.7408,-422.032	0/1:22:15,7:15:540:7:236:-14.9472,0,-42.3139	0/0:90:90,0:90:3204:0:0:0,-27.0927,-288.583	0/0:97:97,0:97:3412:0:0:0,-29.1999,-307.294	0/0:30:30,0:30:1062:0:0:0,-9.0309,-95.8903	0/1:63:34,29:34:1212:29:997:-71.0727,0,-90.4211	0/1:55:24,31:24:858:31:1023:-75.8108,0,-60.9849	0/0:77:77,0:77:2746:0:0:0,-23.1793,-247.381	0/0:123:123,0:123:4397:0:0:0,-37.0267,-395.902
chr06	5188067	.	A	G	14418.4	PASS	AB=0.537451;ABP=12.2811;AC=55;AF=0.302198;AN=182;AO=650;CIGAR=1X;DP=2140;DPB=2140;DPRA=0.941472;EPP=548.27;EPPR=58.9964;GTI=0;LEN=1;MEANALT=1;MQM=53.2354;MQMR=59.5463;NS=91;NUMALT=1;ODDS=3.13857;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23110;QR=53042;RO=1490;RPL=0;RPP=1414.47;RPPR=3238.5;RPR=650;RUN=1;SAF=527;SAP=548.27;SAR=123;SRF=843;SRP=58.9964;SRR=647;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:4,2:4:144:2:72:-5.02085,0,-11.5074	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9273	0/1:27:15,12:15:540:12:428:-30.6782,0,-40.7995	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:7:2,5:2:72:5:171:-13.5989,0,-4.72092	0/1:16:7,9:7:248:9:324:-24.6068,0,-17.8477	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/1:19:8,11:8:273:11:396:-30.2122,0,-19.176	0/1:13:4,9:4:125:9:320:-25.1899,0,-7.64523	0/1:11:5,6:5:167:6:216:-16.4511,0,-12.0471	0/1:84:31,53:31:1108:53:1891:-144.337,0,-74.7399	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.464	0/1:41:29,12:29:1018:12:428:-26.3112,0,-79.5744	0/1:39:25,14:25:900:14:500:-33.5276,0,-69.5808	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.752	0/1:41:25,16:25:900:16:568:-38.7291,0,-68.9788	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.138	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.035	0/0:31:31,0:31:1074:0:0:0,-9.33193,-96.9594	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2901	0/1:17:6,11:6:216:11:396:-30.8281,0,-14.6274	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:2,4:2:72:4:144:-11.4849,0,-5.03054	0/1:13:4,9:4:144:9:320:-25.0401,0,-9.40023	0/1:11:6,5:6:212:5:180:-13.2174,0,-16.1135	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2481	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8395	0/1:24:11,13:11:396:13:459:-34.3632,0,-28.758	0/1:7:3,4:3:99:4:144:-11.1875,0,-7.12876	0/0:18:17,1:17:608:1:36:0,-1.82537,-51.4588	1/1:22:0,22:0:0:22:788:-70.9569,-6.62266,0	.:.:.:.:.:.:.:.	1/1:25:0,25:0:0:25:900:-79.4129,-7.52575,0	1/1:34:2,32:2:72:32:1129:-94.8276,-3.40314,0	.:.:.:.:.:.:.:.	0/1:45:25,20:25:896:20:716:-51.0684,0,-67.414	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.747	1/1:27:1,26:1:36:26:928:-80.0596,-4.54904,0	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.495	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0706	0/1:14:9,5:9:309:5:180:-12.3165,0,-23.9263	0/1:23:16,7:16:576:7:248:-15.7106,0,-45.2467	0/1:31:23,8:23:820:8:288:-16.8982,0,-64.7825	0/1:10:6,4:6:203:4:144:-10.2844,0,-15.5909	0/1:10:8,2:8:288:2:72:-3.81673,0,-23.2525	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3315	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.2219	0/1:9:4,5:4:140:5:180:-13.8216,0,-10.2353	0/1:20:6,14:6:216:14:486:-37.6807,0,-13.7699	1/1:22:0,22:0:0:22:773:-69.6433,-6.62266,0	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1767	1/1:11:0,11:0:0:11:396:-35.6515,-3.31133,0	0/1:18:8,10:8:279:10:348:-25.8791,0,-20.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3089	1/1:12:0,12:0:0:12:432:-38.9721,-3.61236,0	1/1:35:2,33:2:72:33:1161:-97.6668,-3.69933,0	0/1:9:2,7:2:72:7:252:-20.2509,0,-4.12745	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.076	1/1:11:0,11:0:0:11:396:-35.6247,-3.31133,0	.:.:.:.:.:.:.:.	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3329	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0704	0/0:21:21,0:21:724:0:0:0,-6.32163,-65.4714	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5702	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.146	1/1:23:2,21:2:72:21:752:-61.0675,-0.0869676,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:13:6,7:6:216:7:248:-18.5491,0,-15.8724	0/1:18:8,10:8:288:10:347:-26.1055,0,-20.8442	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3911	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6388	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0666	1/1:25:0,25:0:0:25:896:-80.7494,-7.52575,0	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2402	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8434	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.9246	0/0:35:35,0:35:1256:0:0:0,-10.536,-112.854	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.259	0/1:30:13,17:13:453:17:600:-45.2298,0,-32.0462	0/0:60:60,0:60:2145:0:0:0,-18.0618,-193.302	0/1:16:9,7:9:324:7:248:-17.8179,0,-24.6894	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6189	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.491	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.935	0/1:93:15,78:15:531:78:2753:-219.154,0,-20.1261	0/1:20:7,13:7:252:13:456:-35.2231,0,-17.0084	0/0:12:12,0:12:411:0:0:0,-3.61236,-37.3179	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.161
chr06	5188072	.	C	T	13715.1	PASS	AB=0.539974;ABP=13.6001;AC=54;AF=0.296703;AN=182;AO=630;CIGAR=1X;DP=2118;DPB=2118;DPRA=0.965413;EPP=622.659;EPPR=49.7999;GTI=1;LEN=1;MEANALT=1;MQM=53.1794;MQMR=59.5528;NS=91;NUMALT=1;ODDS=2.06231;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22432;QR=52914;RO=1487;RPL=0;RPP=1371.04;RPPR=3231.99;RPR=630;RUN=1;SAF=527;SAP=622.659;SAR=103;SRF=833;SRP=49.7999;SRR=654;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:4,2:4:144:2:68:-4.64474,0,-11.5074	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2071	0/1:27:15,12:15:532:12:428:-30.6782,0,-40.076	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:7:2,5:2:68:5:176:-14.0572,0,-4.34705	0/1:13:6,7:6:216:7:244:-18.3181,0,-15.8771	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:16:8,8:8:288:8:280:-20.693,0,-21.4463	0/1:11:3,8:3:108:8:284:-22.5576,0,-6.76384	0/1:11:5,6:5:180:6:216:-16.4511,0,-13.2407	0/1:82:32,50:32:1148:50:1796:-135.918,0,-78.9408	0/0:50:49,1:49:1738:1:36:0,-11.4583,-153.096	0/1:41:29,12:29:1028:12:428:-26.3084,0,-80.477	0/1:40:25,15:25:888:15:519:-34.9331,0,-68.196	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.441	0/1:42:25,17:25:883:17:604:-41.6623,0,-67.1442	0/0:47:47,0:47:1649:0:0:0,-14.1484,-148.68	0/0:49:49,0:49:1723:0:0:0,-14.7505,-155.185	0/0:29:29,0:29:1013:0:0:0,-8.72987,-91.4745	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0196	0/1:14:5,9:5:180:9:320:-24.8954,0,-12.2919	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:2,3:2:72:3:108:-8.55573,0,-5.33157	0/1:11:4,7:4:144:7:244:-18.8913,0,-10.0023	0/1:11:7,4:7:252:4:140:-9.61507,0,-19.7172	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0882	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8793	0/1:24:11,13:11:396:13:468:-35.1747,0,-28.758	0/1:7:3,4:3:104:4:144:-11.1875,0,-7.59369	0/0:18:17,1:17:608:1:36:0,-1.82537,-51.4588	1/1:22:0,22:0:0:22:792:-71.315,-6.62266,0	.:.:.:.:.:.:.:.	1/1:24:0,24:0:0:24:864:-76.1787,-7.22472,0	1/1:33:2,31:2:72:31:1116:-93.6563,-3.10211,0	.:.:.:.:.:.:.:.	0/1:42:23,19:23:815:19:668:-47.5669,0,-61.0275	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.666	1/1:28:1,27:1:36:27:964:-83.2057,-4.85007,0	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.4923	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2402	0/1:14:9,5:9:324:5:176:-11.9509,0,-25.2914	0/1:23:16,7:16:572:7:252:-16.0726,0,-44.8851	0/1:30:22,8:22:777:8:288:-17.1993,0,-61.2087	0/1:10:7,3:7:252:3:108:-7.05058,0,-20.0187	0/1:10:8,2:8:271:2:68:-3.44062,0,-21.7045	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6935	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:9:4,5:4:144:5:180:-13.8216,0,-10.6043	0/1:19:6,13:6:212:13:464:-35.9948,0,-13.7052	1/1:23:0,23:0:0:23:828:-74.5883,-6.92369,0	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1767	1/1:10:0,10:0:0:10:360:-32.4174,-3.0103,0	0/1:17:7,10:7:243:10:352:-26.5404,0,-17.09	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9427	1/1:12:0,12:0:0:12:417:-37.633,-3.61236,0	1/1:33:2,31:2:72:31:1108:-92.9096,-3.09727,0	0/1:8:3,5:3:108:5:180:-14.0793,0,-7.66693	0/0:49:49,0:49:1742:0:0:0,-14.7505,-157.042	1/1:11:0,11:0:0:11:392:-35.3496,-3.31133,0	.:.:.:.:.:.:.:.	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7293	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:3:2,0:2:72:0:0:0,-0.60206,-6.47723	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2779	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6935	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:63:63,0:63:2231:0:0:0,-18.9649,-200.988	0/1:22:2,20:2:72:20:701:-56.5404,0,-0.214062	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:15:8,7:8:279:7:252:-18.309,0,-20.9096	0/1:18:7,11:7:252:11:387:-29.7004,0,-17.6104	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.068	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.997	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2402	1/1:25:0,25:0:0:25:888:-80.0336,-7.52575,0	0/0:23:23,0:23:820:0:0:0,-6.92369,-73.9599	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6853	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.4477	0/0:36:36,0:36:1276:0:0:0,-10.8371,-114.652	0/0:54:54,0:54:1912:0:0:0,-16.2556,-172.339	0/1:30:13,17:13:464:17:608:-45.9424,0,-33.0441	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.267	0/1:15:9,6:9:324:6:212:-14.8841,0,-24.9904	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0271	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.278	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.575	0/1:93:14,79:14:500:79:2823:-225.342,0,-17.3404	0/1:20:7,13:7:248:13:445:-34.1239,0,-16.6436	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.505
chr06	5188116	.	A	T	40046.5	PASS	AB=0.41816;ABP=51.7037;AC=127;AF=0.697802;AN=182;AO=1495;CIGAR=1X;DP=2225;DPB=2225;DPRA=1.41196;EPP=27.1812;EPPR=338.215;GTI=0;LEN=1;MEANALT=1.0119;MQM=59.5231;MQMR=54.0633;NS=91;NUMALT=1;ODDS=2.38186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53216;QR=26031;RO=727;RPL=1495;RPP=3249.36;RPPR=1581.67;RPR=0;RUN=1;SAF=812;SAP=27.1812;SAR=683;SRF=531;SRP=338.215;SRR=196;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.38905	1/1:16:0,16:0:0:16:576:-52.1657,-4.81648,0	0/1:27:12,15:12:432:15:540:-40.7995,0,-31.0378	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:7:5,2:5:180:2:72:-4.72092,0,-14.4214	0/1:17:9,8:9:316:8:286:-20.968,0,-23.5844	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:20:12,8:12:432:8:288:-20.2422,0,-33.1496	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.4909	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4511	0/1:87:58,29:58:2072:29:1044:-68.076,0,-159.866	1/1:51:0,51:0:0:51:1820:-164.063,-15.3525,0	0/1:47:17,30:17:612:30:1076:-82.9906,0,-41.0574	0/1:43:18,25:18:639:25:883:-66.8413,0,-44.7939	1/1:48:0,48:0:0:48:1700:-153.279,-14.4494,0	0/1:43:19,24:19:675:24:847:-63.6044,0,-47.7572	1/1:51:0,51:0:0:51:1805:-162.714,-15.3525,0	1/1:48:0,48:0:0:48:1705:-153.725,-14.4494,0	1/1:32:0,32:0:0:32:1131:-102.093,-9.63296,0	1/1:8:0,8:0:0:8:284:-25.894,-2.40824,0	0/1:18:12,6:12:432:6:214:-14.1598,0,-33.7609	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.1839	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.4008	0/1:12:5,7:5:180:7:252:-19.4162,0,-12.9164	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:13:0,13:0:0:13:464:-42.0882,-3.91339,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.4757	0/1:7:4,3:4:144:3:108:-7.9632,0,-11.1875	1/1:18:1,17:1:36:17:612:-51.8203,-1.82537,0	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.3647	.:.:.:.:.:.:.:.	0/0:23:23,0:23:828:0:0:0,-6.92369,-73.7195	0/0:35:33,2:33:1184:2:72:0,-3.70417,-99.765	.:.:.:.:.:.:.:.	0/1:52:27,25:27:963:25:896:-65.3068,0,-71.0966	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:30:0,30:0:0:30:1071:-96.697,-9.0309,0	0/0:27:26,1:26:936:1:36:0,-4.54904,-80.8406	1/1:20:0,20:0:0:20:708:-63.91,-6.0206,0	1/1:22:0,22:0:0:22:783:-70.7837,-6.62266,0	0/1:15:7,8:7:252:8:279:-20.9321,0,-18.4925	0/1:30:14,16:14:489:16:576:-43.1395,0,-35.2756	0/1:30:9,21:9:324:21:756:-59.3255,0,-20.4378	0/1:11:4,7:4:144:7:248:-19.3529,0,-9.98341	0/1:10:2,8:2:72:8:288:-23.2525,0,-3.81673	1/1:14:0,14:0:0:14:495:-44.8784,-4.21442,0	1/1:10:0,10:0:0:10:336:-30.5393,-3.0103,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8216	0/1:20:14,6:14:504:6:207:-12.9463,0,-39.2871	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.0607	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:4:0,4:0:0:4:140:-12.9412,-1.20412,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.6515	0/1:19:11,8:11:392:8:279:-19.728,0,-29.3001	1/1:4:0,4:0:0:4:144:-13.3089,-1.20412,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6763	0/0:36:34,2:34:1215:2:72:0,-4.00036,-102.519	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.2509	1/1:51:0,51:0:0:51:1824:-164.333,-15.3525,0	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.3496	.:.:.:.:.:.:.:.	1/1:13:0,13:0:0:13:447:-40.5544,-3.91339,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	1/1:22:0,22:0:0:22:775:-70.0629,-6.62266,0	1/1:15:0,15:0:0:15:540:-48.9319,-4.51545,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:62:0,62:0:0:62:2219:-199.907,-18.6639,0	0/0:24:22,2:22:788:2:72:0,-0.387997,-64.1494	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:15:7,8:7:252:8:288:-21.7295,0,-18.309	0/1:20:12,8:12:428:8:280:-19.514,0,-32.79	1/1:18:0,18:0:0:18:633:-57.2443,-5.41854,0	1/1:20:0,20:0:0:20:711:-64.3064,-6.0206,0	1/1:22:0,22:0:0:22:777:-70.2511,-6.62266,0	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.7214	1/1:23:0,23:0:0:23:828:-74.6815,-6.92369,0	1/1:15:0,15:0:0:15:521:-47.2035,-4.51545,0	1/1:22:0,22:0:0:22:780:-70.365,-6.62266,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:53:0,53:0:0:53:1868:-168.38,-15.9546,0	0/1:39:26,13:26:932:13:459:-29.8814,0,-72.3829	1/1:59:0,59:0:0:59:2086:-187.973,-17.7608,0	0/1:23:14,9:14:504:9:320:-22.2187,0,-38.742	1/1:30:0,30:0:0:30:1063:-95.9716,-9.0309,0	1/1:35:0,35:0:0:35:1260:-113.688,-10.5361,0	1/1:36:0,33:0:0:33:1167:-104.968,-9.93399,0	0/1:103:88,15:88:3142:15:540:-17.9305,0,-251.155	0/1:34:27,7:27:968:7:252:-12.7939,0,-77.0687	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	1/1:53:0,53:0:0:53:1904:-171.633,-15.9546,0
chr06	5201487	.	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chr06	5222257	.	AG	AC	30211.9	PASS	AB=0.59413;ABP=231.12;AC=43;AF=0.233696;AN=184;AO=1775;CIGAR=1M1X;DP=7210;DPB=7210;DPRA=0.941407;EPP=3857.37;EPPR=11768;GTI=1;LEN=1;MEANALT=1.08333;MQM=44.6344;MQMR=59.3913;NS=92;NUMALT=1;ODDS=0.726899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63616;QR=192958;RO=5418;RPL=0;RPP=3857.37;RPPR=11768;RPR=1775;RUN=1;SAF=1775;SAP=3857.37;SAR=0;SRF=5418;SRP=11768;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:26,29:26:926:29:1044:-75.3348,0,-67.0474	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.928	0/1:167:57,110:57:2027:110:3944:-292.823,0,-132.429	0/0:194:191,0:191:6800:0:0:0,-57.4967,-611.637	0/1:48:5,43:5:180:43:1548:-121.199,0,-2.10262	0/1:16:11,5:11:375:5:176:-10.3323,0,-29.2523	0/0:31:31,0:31:1096:0:0:0,-9.33193,-98.9462	0/1:113:34,79:34:1211:79:2832:-210.26,0,-74.9356	0/1:117:48,69:48:1697:69:2455:-179.178,0,-117.448	0/1:43:21,19:21:744:19:668:-47.265,0,-54.917	0/1:36:10,26:10:349:26:936:-72.983,0,-20.6307	0/0:122:122,0:122:4346:0:0:0,-36.7257,-391.272	0/1:101:46,55:46:1652:55:1980:-139.883,0,-118.555	0/1:57:28,29:28:1006:29:1036:-73.9463,0,-73.5673	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.282	0/1:63:25,38:25:887:38:1356:-100.325,0,-61.1545	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.762	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.814	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:127:126,0:126:4485:0:0:0,-37.9298,-403.205	0/1:126:63,63:63:2258:63:2248:-160.326,0,-164.888	0/0:83:82,1:82:2880:1:36:0,-21.4067,-255.851	0/1:107:42,64:42:1502:64:2296:-170.324,0,-103.202	0/1:36:16,20:16:559:20:720:-53.391,0,-39.754	0/1:77:24,53:24:840:53:1908:-144.966,0,-52.6912	0/0:142:142,0:142:5057:0:0:0,-42.7463,-455.27	0/0:206:206,0:206:7318:0:0:0,-62.0122,-658.319	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.956	0/1:233:77,156:77:2745:156:5592:-427.368,0,-177.15	0/1:37:14,23:14:500:23:809:-60.5775,0,-34.1983	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.882	0/1:8:1,7:1:36:7:252:-20.3023,0,-1.19003	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:3,2:3:108:2:72:-5.18477,0,-8.57002	0/1:10:5,5:5:169:5:180:-12.6176,0,-12.5312	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82813	0/1:217:110,107:110:3936:107:3833:-275.939,0,-289.104	0/0:121:121,0:121:4283:0:0:0,-36.4246,-385.539	0/0:36:35,0:35:1258:0:0:0,-10.536,-113.105	.:.:.:.:.:.:.:.	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.483	0/0:20:20,0:20:718:0:0:0,-6.0206,-64.8891	0/1:147:61,86:61:2173:86:3080:-227.333,0,-151.465	0/1:44:27,17:27:924:17:608:-41.274,0,-70.2181	0/1:73:39,34:39:1404:34:1220:-86.5466,0,-104.646	0/1:98:52,46:52:1839:46:1652:-117.228,0,-136.245	0/1:182:62,118:62:2209:118:4244:-311.826,0,-144.558	0/0:113:112,1:112:3987:1:36:0,-30.4496,-355.399	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.799	0/1:109:50,59:50:1788:59:2120:-153.824,0,-128.362	0/1:75:17,58:17:610:58:2076:-163.181,0,-32.637	1/1:5:0,5:0:0:5:180:-16.4073,-1.50515,0	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.511	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.94	0/1:7:2,5:2:59:5:180:-13.8366,0,-3.49663	0/1:83:27,56:27:961:56:2008:-151.741,0,-61.4202	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5109	0/1:3:1,2:1:36:2:72:-5.52498,0,-2.69518	0/1:8:4,4:4:144:4:144:-10.8332,0,-10.9044	0/1:54:23,31:23:828:31:1112:-82.7688,0,-58.5538	0/0:110:108,2:108:3841:2:72:0,-26.3537,-338.052	0/1:4:3,1:3:108:1:36:-2.36269,0,-8.87105	0/0:236:235,0:235:8386:0:0:0,-70.742,-754.302	0/0:110:109,1:109:3859:1:36:0,-29.5465,-343.876	0/0:37:37,0:37:1299:0:0:0,-11.1381,-117.086	0/0:75:74,0:74:2645:0:0:0,-22.2762,-237.93	0/0:143:141,2:141:5027:2:72:0,-36.2703,-445.584	0/0:125:123,2:123:4395:2:72:0,-30.8518,-388.755	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.084	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.539	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.963	0/1:16:4,12:4:144:12:428:-32.6351,0,-8.49714	0/0:99:99,0:99:3475:0:0:0,-29.802,-312.863	0/1:60:30,30:30:1076:30:1080:-77.3575,0,-79.0619	0/1:96:30,66:30:1080:66:2364:-179.191,0,-68.528	0/0:158:158,0:158:5602:0:0:0,-47.5627,-504.285	0/0:46:46,0:46:1630:0:0:0,-13.8474,-146.854	0/0:108:107,0:107:3794:0:0:0,-32.2102,-341.064	.:.:.:.:.:.:.:.	0/0:94:94,0:94:3354:0:0:0,-28.2968,-301.991	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.453	0/0:150:150,0:150:5370:0:0:0,-45.1545,-483.091	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.827	0/0:67:65,0:65:2323:0:0:0,-19.5669,-208.968	0/1:39:20,19:20:707:19:684:-49.2528,0,-51.8948	0/0:116:116,0:116:4128:0:0:0,-34.9195,-371.569	0/1:28:14,13:14:493:13:468:-32.5646,0,-36.2795	0/0:85:85,0:85:3031:0:0:0,-25.5875,-272.95	0/0:86:86,0:86:3086:0:0:0,-25.8886,-277.911	0/0:35:35,0:35:1249:0:0:0,-10.536,-112.564	0/1:84:36,48:36:1292:48:1724:-128.031,0,-91.127	0/1:82:28,54:28:977:54:1927:-146.18,0,-63.5498	0/0:120:120,0:120:4258:0:0:0,-36.1236,-382.836	0/0:105:105,0:105:3761:0:0:0,-31.6081,-338.042
chr06	5222275	.	A	G	137313	PASS	AB=0.402593;ABP=244.562;AC=141;AF=0.766304;AN=184;AO=5351;CIGAR=1X;DP=7119;DPB=7119;DPRA=15.6352;EPP=4249.87;EPPR=3704.31;GTI=1;LEN=1;MEANALT=1.04396;MQM=59.3934;MQMR=44.5635;NS=92;NUMALT=1;ODDS=0.535765;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191332;QR=62843;RO=1764;RPL=1058;RPP=4249.87;RPPR=3704.31;RPR=4293;RUN=1;SAF=5351;SAP=11622.6;SAR=0;SRF=1764;SRP=3833.49;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:27,26:27:949:26:932:-68.1406,0,-67.8319	1/1:55:0,55:0:0:55:1938:-174.676,-16.5567,0	0/1:165:109,56:109:3885:56:1996:-130.244,0,-288.365	1/1:193:0,193:0:0:193:6871:-618.321,-58.0988,0	0/1:47:42,5:42:1492:5:180:-2.40366,0,-116.892	0/1:16:5,11:5:176:11:396:-31.158,0,-10.3323	1/1:30:0,30:0:0:30:1076:-97.1505,-9.0309,0	0/1:113:79,34:79:2801:34:1206:-74.6375,0,-207.484	0/1:116:68,48:68:2409:48:1720:-119.386,0,-175.573	0/1:43:22,21:22:788:21:756:-55.4206,0,-56.3193	0/1:36:26,10:26:928:10:337:-19.8036,0,-72.2955	1/1:120:0,120:0:0:120:4316:-388.57,-36.1236,0	0/1:103:57,46:57:2044:46:1641:-116.96,0,-144.485	0/1:57:29,28:29:1036:28:1004:-73.3869,0,-73.7242	1/1:81:0,81:0:0:81:2916:-262.642,-24.3834,0	0/1:62:37,25:37:1320:25:891:-61.8412,0,-97.4326	1/1:33:0,33:0:0:33:1169:-105.499,-9.93399,0	1/1:37:0,37:0:0:37:1328:-119.814,-11.1381,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:125:0,125:0:0:125:4452:-400.825,-37.6288,0	0/1:123:61,62:61:2173:62:2228:-163.092,0,-154.727	1/1:83:1,82:1:36:82:2933:-260.62,-21.4067,0	0/1:107:64,43:64:2258:43:1548:-107.395,0,-167.167	0/1:37:21,15:21:737:15:536:-37.5295,0,-54.2862	0/1:77:54,23:54:1924:23:824:-51.2585,0,-146.722	1/1:140:0,140:0:0:140:5001:-450.229,-42.1442,0	1/1:202:0,202:0:0:202:7249:-652.036,-60.8081,0	1/1:33:0,33:0:0:33:1184:-106.84,-9.93399,0	0/1:229:153,76:153:5457:76:2724:-176.466,0,-415.932	0/1:36:22,14:22:792:14:500:-34.4991,0,-59.3315	1/1:83:0,83:0:0:83:2984:-268.682,-24.9855,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.3023	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.18477	0/1:9:5,4:5:180:4:144:-10.6043,0,-12.9186	1/1:2:0,2:0:0:2:72:-6.82813,-0.60206,0	0/1:215:106,109:106:3792:109:3916:-287.908,0,-272.64	1/1:118:0,118:0:0:118:4190:-377.111,-35.5215,0	1/1:36:0,36:0:0:36:1296:-116.875,-10.8371,0	.:.:.:.:.:.:.:.	1/1:73:0,73:0:0:73:2617:-235.017,-21.9752,0	1/1:20:0,20:0:0:20:720:-65.0695,-6.0206,0	0/1:145:84,61:84:3008:61:2192:-153.25,0,-221.712	0/1:43:17,26:17:593:26:936:-71.6105,0,-40.2917	0/1:73:34,39:34:1212:39:1404:-104.646,0,-85.8598	0/1:96:44,52:44:1572:52:1836:-135.984,0,-110.698	0/1:181:120,61:120:4282:61:2181:-142.019,0,-313.343	1/1:113:1,112:1:36:112:4009:-357.377,-30.4496,0	1/1:98:0,98:0:0:98:3516:-316.641,-29.5009,0	0/1:107:59,47:59:2097:47:1688:-120.081,0,-152.789	0/1:72:54,18:54:1925:18:644:-36.597,0,-150.917	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4073	1/1:87:0,87:0:0:87:3117:-280.685,-26.1896,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.1376	0/1:80:56,24:56:1981:24:856:-52.879,0,-150.336	1/1:28:0,28:0:0:28:989:-89.3197,-8.42884,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.52498	0/1:8:4,4:4:144:4:144:-10.9044,0,-10.8332	0/1:55:32,23:32:1133:23:815:-57.0795,0,-84.3518	1/1:110:2,108:2:72:108:3855:-339.535,-26.3537,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.36269	1/1:232:0,232:0:0:232:8294:-746.388,-69.839,0	1/1:108:1,107:1:36:107:3818:-340.156,-28.9444,0	1/1:37:0,37:0:0:37:1332:-120.031,-11.1381,0	1/1:74:0,74:0:0:74:2641:-237.929,-22.2762,0	1/1:141:2,139:2:72:139:4948:-438.474,-35.6683,0	1/1:122:2,120:2:72:120:4288:-379.161,-29.9487,0	1/1:31:0,31:0:0:31:1116:-100.444,-9.33193,0	1/1:48:0,48:0:0:48:1701:-153.358,-14.4494,0	1/1:40:0,40:0:0:40:1421:-128.183,-12.0412,0	0/1:16:12,4:12:417:4:144:-8.49714,0,-31.9028	1/1:98:0,98:0:0:98:3508:-315.855,-29.5009,0	0/1:59:29,30:29:1040:30:1068:-78.642,0,-74.1697	0/1:94:64,30:64:2281:30:1076:-68.7697,0,-172.238	1/1:157:0,157:0:0:157:5617:-505.63,-47.2617,0	1/1:44:0,43:0:0:43:1542:-138.728,-12.9443,0	1/1:107:0,107:0:0:107:3810:-342.674,-32.2102,0	.:.:.:.:.:.:.:.	1/1:93:0,93:0:0:93:3329:-299.741,-27.9958,0	1/1:66:0,66:0:0:66:2368:-213.298,-19.868,0	1/1:148:0,148:0:0:148:5296:-476.726,-44.5524,0	1/1:73:0,73:0:0:73:2615:-235.489,-21.9752,0	1/1:66:0,66:0:0:66:2363:-212.909,-19.868,0	0/1:38:19,19:19:669:19:684:-50.1324,0,-48.2649	1/1:114:0,114:0:0:114:4089:-367.531,-34.3174,0	0/1:28:14,14:14:504:14:504:-37.2693,0,-35.1663	1/1:83:0,83:0:0:83:2971:-267.558,-24.9855,0	1/1:84:0,84:0:0:84:2996:-269.825,-25.2865,0	1/1:35:0,35:0:0:35:1260:-113.555,-10.5361,0	0/1:85:49,36:49:1756:36:1296:-91.186,0,-130.579	0/1:81:54,27:54:1936:27:948:-61.2438,0,-147.266	1/1:117:1,115:1:36:115:4095:-364.827,-31.681,0	1/1:105:0,105:0:0:105:3741:-336.234,-31.6082,0
chr06	5238907	.	GA	AA	113420	PASS	AB=0.494293;ABP=3.82826;AC=143;AF=0.760638;AN=188;AO=5302;CIGAR=1X1M;DP=6788;DPB=6788;DPRA=24.319;EPP=11507.5;EPPR=3197.25;GTI=1;LEN=1;MEANALT=1.08602;MQM=59.9227;MQMR=59.9946;NS=94;NUMALT=1;ODDS=1.39597;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189745;QR=52111;RO=1475;RPL=1;RPP=11507.5;RPPR=3197.25;RPR=5301;RUN=1;SAF=5302;SAP=11516.2;SAR=0;SRF=1475;SRP=3205.93;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:24,16:24:838:16:567:-39.3195,0,-63.694	1/1:44:0,44:0:0:44:1552:-139.964,-13.2453,0	0/1:140:79,61:79:2816:61:2173:-153.691,0,-211.535	1/1:108:1,107:1:25:107:3836:-342.866,-30.0114,0	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6513	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	1/1:56:0,56:0:0:56:1989:-179.282,-16.8577,0	0/1:107:50,57:50:1749:57:2020:-149.575,0,-125.478	0/1:58:22,35:22:767:35:1256:-95.8268,0,-51.8307	0/1:78:34,43:34:1186:43:1548:-116.074,0,-83.503	0/1:82:31,51:31:1087:51:1836:-140.836,0,-73.4525	1/1:65:0,65:0:0:65:2332:-209.95,-19.567,0	0/1:64:31,33:31:1090:33:1180:-87.2421,0,-79.1414	0/1:83:44,39:44:1569:39:1400:-101.291,0,-116.515	1/1:63:0,63:0:0:63:2260:-203.658,-18.9649,0	0/1:62:36,26:36:1271:26:932:-65.535,0,-96.0271	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:36:1,35:1:36:35:1256:-109.747,-7.23881,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:93:0,93:0:0:93:3329:-299.667,-27.9958,0	0/1:66:39,27:39:1368:27:953:-66.2153,0,-103.548	1/1:58:0,58:0:0:58:2073:-186.839,-17.4597,0	0/1:75:42,32:42:1512:32:1142:-80.4512,0,-113.739	0/1:34:18,15:18:622:15:540:-38.6427,0,-46.0096	0/1:40:15,25:15:538:25:900:-69.2798,0,-36.7146	1/1:181:0,181:0:0:181:6469:-582.259,-54.4864,0	1/1:189:0,189:0:0:189:6761:-608.562,-56.8947,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:169:86,83:86:3068:83:2976:-217.198,0,-225.473	0/1:147:51,96:51:1801:96:3431:-264.748,0,-118.119	1/1:73:0,72:0:0:72:2554:-229.746,-21.6742,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/0:3:3,0:3:97:0:0:0,-0.90309,-9.04999	0/1:4:3,1:3:100:1:36:-2.39415,0,-8.12574	1/1:19:0,19:0:0:19:669:-60.5339,-5.71957,0	0/1:153:78,75:78:2785:75:2692:-196.467,0,-204.833	1/1:119:0,119:0:0:119:4248:-382.455,-35.8226,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:9:6,3:6:205:3:108:-7.3659,0,-16.0744	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:133:69,64:69:2426:64:2292:-166.447,0,-178.555	0/1:52:34,18:34:1199:18:648:-42.9983,0,-92.5601	0/1:36:20,16:20:705:16:572:-40.9763,0,-52.9368	0/1:57:35,22:35:1209:22:792:-54.447,0,-91.9502	0/1:108:52,56:52:1844:56:1993:-147.131,0,-133.727	1/1:86:2,84:2:72:84:3016:-264.823,-19.0519,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:155:85,70:85:3024:70:2516:-179.805,0,-225.729	0/1:46:19,27:19:682:27:972:-73.9505,0,-47.8625	0/1:16:7,9:7:241:9:324:-24.6894,0,-17.2082	1/1:102:0,102:0:0:102:3656:-329.243,-30.7051,0	1/1:94:0,94:0:0:94:3365:-303.041,-28.2968,0	0/1:9:4,5:4:144:5:180:-13.8404,0,-10.6043	0/1:147:72,75:72:2545:75:2672:-196.416,0,-185.048	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	0/1:8:6,2:6:214:2:72:-4.42848,0,-17.1995	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:65:24,41:24:841:41:1468:-112.849,0,-56.4399	1/1:101:0,101:0:0:101:3604:-324.567,-30.404,0	0/1:6:2,4:2:70:4:144:-11.5074,0,-4.84115	1/1:133:1,132:1:36:132:4717:-421.088,-36.4387,0	1/1:111:1,110:1:36:110:3948:-351.745,-29.8161,0	1/1:63:0,63:0:0:63:2253:-203.031,-18.9649,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:118:1,117:1:36:117:4174:-372.242,-31.9233,0	1/1:164:0,164:0:0:164:5877:-529.038,-49.3689,0	1/1:57:0,56:0:0:56:2016:-181.353,-16.8577,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:116:0,116:0:0:116:4150:-373.683,-34.9195,0	0/1:54:25,29:25:878:29:1040:-77.6587,0,-63.0795	0/1:259:138,121:138:4860:121:4324:-311.37,0,-359.588	1/1:98:0,98:0:0:98:3513:-316.378,-29.5009,0	1/1:73:0,69:0:0:69:2457:-221.023,-20.7711,0	1/1:90:1,89:1:36:89:3173:-282.194,-23.4944,0	0/1:16:8,8:8:278:8:288:-21.4331,0,-20.5403	1/1:64:1,63:1:36:63:2260:-200.064,-15.6676,0	1/1:107:0,107:0:0:107:3825:-344.445,-32.2102,0	1/1:134:2,132:2:72:132:4721:-418.209,-33.5013,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:42:19,23:19:682:23:828:-62.2009,0,-49.0666	1/1:97:2,94:2:72:94:3368:-296.482,-22.422,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:73:1,72:1:36:72:2588:-229.562,-18.3769,0	1/1:64:0,64:0:0:64:2285:-205.91,-19.2659,0	0/1:137:74,63:74:2636:63:2253:-161.763,0,-196.244	0/1:48:35,13:35:1199:13:468:-28.0102,0,-93.7575	1/1:84:0,84:0:0:84:2987:-269.06,-25.2865,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0
chr06	5238979	.	CCATG	TCATG	111753	PASS	AB=0.477467;ABP=14.8511;AC=146;AF=0.784946;AN=186;AO=5220;CIGAR=1X4M;DP=6663;DPB=6663;DPRA=0;EPP=11338.1;EPPR=3043.07;GTI=0;LEN=1;MEANALT=1.4086;MQM=59.9795;MQMR=59.9957;NS=93;NUMALT=1;ODDS=1.00447;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186333;QR=48607;RO=1400;RPL=0;RPP=11338.1;RPPR=3043.07;RPR=5220;RUN=1;SAF=0;SAP=11338.1;SAR=5220;SRF=0;SRP=3043.07;SRR=1400;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:5,15:5:179:15:513:-40.4723,0,-10.4398	1/1:87:0,86:0:0:86:3065:-275.847,-25.8886,0	0/1:74:46,28:46:1590:28:1004:-68.3996,0,-121.109	1/1:157:1,156:1:36:156:5561:-497.018,-43.6634,0	0/1:40:27,13:27:941:13:468:-30.4184,0,-72.9608	0/1:54:21,33:21:719:33:1188:-90.973,0,-48.7709	1/1:79:1,78:1:36:78:2776:-246.481,-20.1831,0	0/1:133:50,82:50:1713:82:2936:-224.507,0,-114.484	0/1:89:47,42:47:1615:42:1496:-108.143,0,-118.845	0/1:119:63,54:63:2153:54:1936:-139.056,0,-158.575	0/1:37:15,22:15:518:22:788:-60.1067,0,-35.8087	1/1:45:0,44:0:0:44:1568:-141.15,-13.2453,0	0/1:66:34,30:34:1177:30:1065:-76.553,0,-86.6264	0/1:49:21,28:21:727:28:1008:-76.2859,0,-50.999	1/1:65:0,65:0:0:65:2308:-207.979,-19.567,0	0/1:38:15,21:15:529:21:743:-56.0243,0,-36.7721	1/1:60:0,59:0:0:59:2099:-188.819,-17.7608,0	1/1:80:0,80:0:0:80:2850:-256.736,-24.0824,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:46:0,45:0:0:45:1612:-145.01,-13.5464,0	0/1:118:58,60:58:2007:60:2144:-157.706,0,-145.382	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:43:16,26:16:559:26:932:-71.1958,0,-37.6357	0/1:68:34,34:34:1197:34:1220:-89.6368,0,-87.5646	0/1:29:13,16:13:453:16:576:-43.4451,0,-32.3713	1/1:276:1,273:1:36:273:9772:-875.573,-79.2338,0	1/1:94:1,93:1:36:93:3300:-293.623,-24.6985,0	1/1:35:1,34:1:36:34:1224:-106.869,-6.93778,0	0/1:122:79,43:79:2769:43:1540:-102.167,0,-212.728	0/1:125:65,60:65:2283:60:2139:-155.149,0,-168.103	1/1:54:0,53:0:0:53:1896:-170.666,-15.9546,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:4:3,1:3:103:1:36:-2.39415,0,-8.40548	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:231:130,101:130:4515:101:3581:-252.96,0,-336.992	1/1:191:0,191:0:0:191:6818:-613.692,-57.4967,0	1/1:37:0,36:0:0:36:1273:-114.512,-10.8371,0	.:.:.:.:.:.:.:.	1/1:128:0,128:0:0:128:4552:-409.847,-38.5318,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:94:37,57:37:1303:57:2044:-155.935,0,-89.2745	0/1:64:32,32:32:1116:32:1133:-83.0116,0,-81.4818	0/1:60:35,25:35:1220:25:888:-62.1772,0,-92.0394	0/1:130:59,69:59:2062:69:2441:-181.011,0,-146.974	0/1:83:38,45:38:1298:45:1608:-120.025,0,-92.1291	1/1:128:1,123:1:36:123:4400:-392.64,-34.0723,0	1/1:79:0,79:0:0:79:2806:-252.509,-23.7814,0	0/1:79:49,30:49:1684:30:1076:-73.3715,0,-128.061	0/1:101:56,44:56:1961:44:1584:-112.389,0,-146.302	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:19:12,7:12:423:7:252:-17.3094,0,-32.6862	0/1:76:36,40:36:1243:40:1423:-105.488,0,-89.2913	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	0/1:7:4,3:4:139:3:104:-7.5956,0,-10.7453	0/1:23:9,14:9:315:14:504:-38.7744,0,-21.764	0/1:45:27,18:27:944:18:640:-44.383,0,-71.7276	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:195:0,194:0:0:194:6922:-622.837,-58.3998,0	1/1:139:1,137:1:32:137:4896:-437.612,-38.6428,0	1/1:64:0,63:0:0:63:2260:-203.303,-18.9649,0	1/1:50:0,47:0:0:47:1684:-151.515,-14.1484,0	1/1:145:1,143:1:36:143:5112:-456.667,-40.0649,0	1/1:60:1,59:1:36:59:2116:-187.11,-14.4635,0	1/1:14:0,14:0:0:14:487:-44.1592,-4.21442,0	1/1:58:0,56:0:0:56:1978:-178.025,-16.8577,0	1/1:72:0,72:0:0:72:2575:-231.999,-21.6742,0	0/1:10:5,5:5:167:5:180:-13.5418,0,-12.3486	1/1:64:0,62:0:0:62:2224:-200.118,-18.6639,0	0/1:71:36,34:36:1261:34:1220:-88.7816,0,-92.4666	0/1:89:52,37:52:1793:37:1320:-92.3103,0,-134.858	1/1:121:0,120:0:0:120:4291:-386.007,-36.1236,0	1/1:73:0,71:0:0:71:2512:-226.021,-21.3731,0	1/1:100:0,100:0:0:100:3566:-321.148,-30.103,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:85:0,84:0:0:84:3008:-270.591,-25.2865,0	1/1:70:0,70:0:0:70:2500:-225.253,-21.0721,0	1/1:177:1,176:1:28:176:6295:-563.843,-50.4826,0	1/1:96:0,96:0:0:96:3435:-309.363,-28.8989,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:88:44,42:44:1544:42:1496:-108.65,0,-113.004	1/1:134:1,133:1:36:133:4760:-424.959,-36.7397,0	0/1:43:22,20:22:761:20:716:-51.9074,0,-55.9489	1/1:62:0,62:0:0:62:2199:-198.175,-18.6639,0	1/1:44:0,43:0:0:43:1523:-137.022,-12.9443,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:64:40,24:40:1372:24:843:-56.9207,0,-104.506	0/1:65:45,20:45:1546:20:701:-43.8448,0,-119.86	1/1:44:1,43:1:36:43:1540:-135.295,-9.64705,0	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0
chr06	5257411	.	G	C	18350.7	PASS	AB=0.5;ABP=3.0103;AC=47;AF=0.25;AN=188;AO=1107;CIGAR=1X;DP=5790;DPB=5790;DPRA=0.903353;EPP=2346.41;EPPR=10143.8;GTI=5;LEN=1;MEANALT=1.02128;MQM=50.6631;MQMR=53.9707;NS=94;NUMALT=1;ODDS=0.784684;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39603;QR=167239;RO=4682;RPL=1100;RPP=2346.41;RPPR=10143.8;RPR=7;RUN=1;SAF=1107;SAP=2406.83;SAR=0;SRF=4682;SRP=10169.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:15,8:15:528:8:288:-19.2777,0,-40.6051	0/0:138:138,0:138:4945:0:0:0,-41.5421,-443.695	0/1:107:47,60:47:1684:60:2156:-161.421,0,-118.883	0/0:124:124,0:124:4418:0:0:0,-37.3277,-396.523	0/1:60:24,36:24:864:36:1283:-96.7654,0,-59.7775	0/1:31:9,22:9:320:22:792:-61.2373,0,-19.7412	0/0:96:96,0:96:3439:0:0:0,-28.8989,-308.354	0/1:101:49,52:49:1745:52:1857:-136.559,0,-126.183	0/1:66:32,34:32:1140:34:1212:-88.9101,0,-82.6942	0/1:57:27,30:27:964:30:1067:-78.5193,0,-69.5987	0/1:10:5,5:5:176:5:180:-13.1216,0,-13.1642	0/0:25:25,0:25:879:0:0:0,-7.52575,-79.233	0/1:35:16,19:16:576:19:680:-50.6813,0,-40.6966	0/1:30:14,16:14:495:16:567:-42.2058,0,-35.662	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.007	0/1:18:4,14:4:144:14:500:-39.7982,0,-7.83124	0/0:31:31,0:31:1107:0:0:0,-9.33193,-98.9379	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.3697	0/0:10:10,0:10:341:0:0:0,-3.0103,-30.741	0/0:136:136,0:136:4844:0:0:0,-40.9401,-435.06	0/1:72:36,36:36:1292:36:1292:-93.3431,0,-94.5928	0/0:124:124,0:124:4416:0:0:0,-37.3277,-397.006	0/1:76:42,34:42:1493:34:1220:-86.8729,0,-110.411	0/1:101:64,37:64:2288:37:1328:-88.855,0,-174.67	0/1:60:30,30:30:1080:30:1076:-77.934,0,-78.9832	0/0:241:240,1:240:8550:1:36:0,-68.9652,-764.223	0/0:84:84,0:84:2988:0:0:0,-25.2865,-267.498	0/0:15:15,0:15:521:0:0:0,-4.51545,-46.5306	0/1:122:49,73:49:1752:73:2624:-197.187,0,-121.133	0/1:148:74,74:74:2641:74:2656:-193.758,0,-192.388	0/0:80:80,0:80:2853:0:0:0,-24.0824,-256.568	0/1:5:4,1:4:144:1:36:-2.08408,0,-11.6577	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.162	1/1:6:0,6:0:0:6:212:-18.6701,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.81366,-0.60206,0	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.4174	0/1:85:44,41:44:1546:41:1476:-106.872,0,-112.228	0/0:193:193,0:193:6856:0:0:0,-58.0988,-614.955	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.33	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/0:155:155,0:155:5553:0:0:0,-46.6596,-497.833	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.2379	0/1:140:72,68:72:2584:68:2436:-176.617,0,-190.037	0/1:31:14,17:14:504:17:612:-45.8999,0,-36.1422	0/1:24:10,14:10:360:14:489:-36.9748,0,-25.4114	0/1:80:45,35:45:1594:35:1256:-88.3597,0,-119.459	0/1:71:34,37:34:1220:37:1319:-97.2469,0,-87.4568	0/0:104:104,0:104:3705:0:0:0,-31.3071,-332.179	0/0:74:74,0:74:2664:0:0:0,-22.2762,-239.746	0/1:43:19,24:19:684:24:847:-63.3422,0,-48.9038	0/1:151:71,80:71:2556:80:2872:-210.655,0,-184.368	1/1:6:0,6:0:0:6:216:-19.7257,-1.80618,0	0/0:70:70,0:70:2488:0:0:0,-21.0721,-223.558	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.829	0/1:21:12,9:12:423:9:324:-23.1044,0,-31.5063	0/1:69:39,30:39:1392:30:1065:-74.9693,0,-104.257	0/0:43:43,0:43:1544:0:0:0,-12.9443,-138.756	0/1:7:5,2:5:180:2:72:-4.70058,0,-14.4402	0/1:8:4,4:4:144:4:140:-10.4884,0,-10.9017	0/1:67:43,24:43:1544:24:851:-56.3739,0,-118.719	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.642	1/1:7:0,7:0:0:7:252:-22.9535,-2.10721,0	0/0:118:118,0:118:4206:0:0:0,-35.5215,-378.341	0/0:136:132,3:132:4732:3:108:0,-30.8918,-414.197	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.124	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.232	0/0:148:147,1:147:5250:1:36:0,-40.966,-467.429	0/0:90:90,0:90:3213:0:0:0,-27.0927,-287.999	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1665	0/0:72:72,0:72:2580:0:0:0,-21.6742,-231.011	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.06	0/1:12:7,5:7:252:5:176:-12.5249,0,-19.3127	0/0:84:84,0:84:3012:0:0:0,-25.2865,-269.736	0/1:21:9,12:9:320:12:428:-32.4435,0,-22.7515	0/1:94:59,35:59:2120:35:1260:-85.1228,0,-161.529	0/0:107:107,0:107:3829:0:0:0,-32.2102,-343.852	0/0:90:90,0:90:3231:0:0:0,-27.0927,-288.894	0/0:70:70,0:70:2499:0:0:0,-21.0721,-223.417	0/1:9:1,8:1:36:8:288:-23.341,0,-0.879958	0/0:63:63,0:63:2268:0:0:0,-18.9649,-203.565	0/0:88:88,0:88:3156:0:0:0,-26.4906,-281.939	0/0:121:121,0:121:4308:0:0:0,-36.4246,-386.658	0/0:69:69,0:69:2480:0:0:0,-20.7711,-221.655	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.7493	0/1:37:19,18:19:667:18:648:-47.0847,0,-49.1409	0/0:60:60,0:60:2130:0:0:0,-18.0618,-190.614	0/1:30:16,14:16:572:14:504:-36.5523,0,-42.6563	0/0:35:35,0:35:1256:0:0:0,-10.536,-112.084	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.405	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.3983	0/1:16:9,7:9:312:7:252:-18.1546,0,-23.5097	0/1:22:7,15:7:252:15:506:-38.9095,0,-16.3874	0/0:52:52,0:52:1857:0:0:0,-15.6536,-166.966	0/0:42:41,1:41:1460:1:36:0,-9.05678,-127.834
chr06	5257418	.	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chr06	5518250	.	A	C	123039	PASS	AB=0.510279;ABP=5.5102;AC=148;AF=0.787234;AN=188;AO=5711;CIGAR=1X;DP=7060;DPB=7060;DPRA=51.1377;EPP=12404.3;EPPR=2925.81;GTI=2;LEN=1;MEANALT=1.03261;MQM=59.9181;MQMR=59.9911;NS=94;NUMALT=1;ODDS=0.66232;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203884;QR=48150;RO=1346;RPL=5711;RPP=12404.3;RPPR=2925.81;RPR=0;RUN=1;SAF=0;SAP=12404.3;SAR=5711;SRF=0;SRP=2925.81;SRR=1346;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:79:0,79:0:0:79:2798:-252.057,-23.7814,0	0/1:99:34,65:34:1201:65:2321:-179.346,0,-78.5917	1/1:96:3,93:3:104:93:3305:-287.966,-19.1961,0	0/1:59:30,29:30:1080:29:1029:-75.1625,0,-79.7525	0/1:48:32,16:32:1152:16:572:-37.364,0,-89.5407	1/1:121:0,121:0:0:121:4324:-389.335,-36.4246,0	0/1:95:42,53:42:1504:53:1877:-140.593,0,-107.054	0/1:52:17,35:17:608:35:1256:-97.3705,0,-39.3985	0/1:92:43,49:43:1529:49:1737:-128.918,0,-110.206	0/1:117:56,61:56:2004:61:2192:-162.325,0,-145.413	1/1:88:0,88:0:0:88:3137:-282.527,-26.4906,0	0/1:75:41,34:41:1468:34:1224:-87.8898,0,-109.839	0/1:132:59,73:59:2101:73:2596:-194.152,0,-149.622	1/1:61:0,61:0:0:61:2175:-196,-18.3628,0	0/1:63:37,26:37:1332:26:932:-65.234,0,-101.217	1/1:105:0,105:0:0:105:3745:-337.242,-31.6082,0	1/1:54:0,54:0:0:54:1936:-174.515,-16.2556,0	1/1:87:0,87:0:0:87:3108:-279.944,-26.1896,0	1/1:148:0,148:0:0:148:5285:-475.779,-44.5524,0	0/1:102:41,61:41:1472:61:2173:-165.073,0,-102.071	1/1:40:0,40:0:0:40:1409:-127.105,-12.0412,0	0/1:24:8,16:8:284:16:567:-43.9766,0,-18.6786	0/1:44:27,17:27:949:17:612:-42.1681,0,-72.4775	0/1:57:30,27:30:1080:27:968:-70.2787,0,-80.3545	1/1:192:0,192:0:0:192:6822:-614.049,-57.7978,0	1/1:130:2,128:2:72:128:4596:-406.966,-32.2972,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:156:71,85:71:2544:85:3037:-226.598,0,-182.25	0/1:78:34,44:34:1216:44:1565:-117.659,0,-86.2662	1/1:86:1,85:1:36:85:3040:-270.203,-22.2903,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:176:94,82:94:3368:82:2948:-212.571,0,-250.355	1/1:91:0,91:0:0:91:3245:-292.261,-27.3937,0	1/1:117:1,116:1:36:116:4147:-369.815,-31.6222,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	1/1:50:0,50:0:0:50:1800:-162.28,-15.0515,0	0/1:82:37,45:37:1324:45:1571:-116.987,0,-94.7776	0/1:73:45,28:45:1620:28:1004:-68.7007,0,-124.115	0/1:82:36,44:36:1288:44:1565:-116.698,0,-91.7815	0/1:47:21,26:21:756:26:921:-69.0505,0,-54.2188	0/1:34:13,21:13:464:21:756:-58.1322,0,-31.8625	1/1:107:0,107:0:0:107:3793:-341.56,-32.2102,0	1/1:79:0,79:0:0:79:2804:-252.596,-23.7814,0	0/1:95:53,42:53:1889:42:1512:-107.777,0,-141.689	0/1:148:76,72:76:2717:72:2533:-183.666,0,-200.219	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:108:0,108:0:0:108:3883:-349.663,-32.5112,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:84:42,42:42:1493:42:1508:-110.723,0,-109.376	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/1:48:23,25:23:828:25:885:-65.5171,0,-60.3947	1/1:148:0,148:0:0:148:5309:-477.844,-44.5524,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:83:1,82:1:32:82:2932:-260.915,-21.7862,0	1/1:138:1,137:1:36:137:4868:-434.673,-37.9439,0	1/1:109:0,109:0:0:109:3885:-349.844,-32.8123,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:126:0,126:0:0:126:4493:-404.521,-37.9298,0	1/1:94:1,93:1:36:93:3316:-295.059,-24.6985,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:87:0,87:0:0:87:3103:-279.496,-26.1896,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	0/1:23:12,11:12:432:11:392:-28.6964,0,-32.2975	1/1:78:0,78:0:0:78:2793:-251.608,-23.4803,0	0/1:64:29,35:29:1025:35:1252:-93.7192,0,-73.2948	0/1:145:60,85:60:2147:85:3014:-227.84,0,-149.839	1/1:124:0,124:0:0:124:4417:-397.702,-37.3277,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:96:0,96:0:0:96:3444:-310.164,-28.8989,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:76:0,76:0:0:76:2736:-245.705,-22.8783,0	1/1:90:0,90:0:0:90:3190:-287.208,-27.0927,0	1/1:141:0,140:0:0:140:4994:-449.246,-42.1442,0	1/1:98:0,98:0:0:98:3520:-317.009,-29.5009,0	1/1:51:0,51:0:0:51:1806:-162.809,-15.3525,0	0/1:56:30,26:30:1076:26:936:-67.7018,0,-80.2952	1/1:121:1,120:1:36:120:4289:-382.588,-32.8264,0	0/1:41:26,15:26:919:15:536:-36.2326,0,-70.6839	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:77:0,77:0:0:77:2764:-248.811,-23.1793,0	1/1:98:0,98:0:0:98:3504:-315.569,-29.5009,0	0/1:135:70,65:70:2520:65:2331:-169.41,0,-186.412	0/1:67:50,17:50:1800:17:588:-33.0732,0,-142.113	1/1:16:0,16:0:0:16:551:-49.9145,-4.81648,0	1/1:93:0,93:0:0:93:3344:-301.176,-27.9958,0
chr06	5528623	.	TTTA	GTTG,GTTA	117081	PASS	AB=0.506173,0.490847;ABP=3.78774,4.71956;AC=139,45;AF=0.755435,0.244565;AN=184;AO=4363,1167;CIGAR=1X2M1X,1X3M;DP=5555;DPB=5555.75;DPRA=41.1259,0.939634;EPP=9477.14,2537.12;EPPR=11.6962;GTI=5;LEN=4,1;MEANALT=1.75556,2.1;MQM=47.7135,53.473;MQMR=57.75;NS=92;NUMALT=2;ODDS=0.529773;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=104,0;PQR=0;PRO=0;QA=154119,41610;QR=138;RO=4;RPL=0,0;RPP=9477.14,2537.12;RPPR=11.6962;RPR=4363,1167;RUN=1,1;SAF=4363,1167;SAP=9477.14,2537.12;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,11,13:0:0:11,13:396,468:-70.2447,-38.178,-34.8667,-32.1192,0,-28.2058	1/1:87:0,86,1:0:0:86,1:3028,36:-270.541,-25.8886,0,-267.614,-22.6031,-267.313	1/2:69:0,30,39:0:0:30,39:1059,1390:-198.904,-113.489,-104.458,-85.7675,0,-74.0274	1/1:77:0,77,0:0:0:77,0:2704,0:-242.025,-23.1793,0,-242.025,-23.1793,-242.025	1/2:40:0,17,23:0:0:17,23:612,824:-116.858,-67.2796,-62.1621,-49.9359,0,-43.0122	1/2:62:0,37,24:0:0:37,24:1315,860:-175.925,-69.6939,-58.5558,-106.266,0,-99.0409	1/1:46:0,45,0:0:0:45,0:1592,0:-142.381,-13.5464,0,-142.381,-13.5464,-142.381	1/2:84:0,48,36:0:0:48,36:1667,1277:-238.744,-104.202,-89.7525,-134.892,0,-124.055	1/2:73:0,33,39:0:0:33,39:1162,1373:-205.199,-111.653,-101.719,-93.6605,0,-81.9203	1/2:75:0,46,29:0:0:46,29:1620,1036:-214.374,-84.6899,-70.8425,-130.037,0,-121.307	1/2:62:1,34,27:1:30:34,27:1192,972:-172.814,-76.8468,-69.0055,-93.9272,0,-88.1939	1/1:86:0,84,0:0:0:84,0:2956,0:-264.142,-25.2865,0,-264.142,-25.2865,-264.142	1/2:94:0,50,44:0:0:50,44:1784,1584:-273.764,-129.403,-114.352,-144.718,0,-131.472	1/2:51:0,29,22:0:0:29,22:1023,788:-147.151,-64.4848,-55.7549,-83.0207,0,-76.398	1/1:71:0,70,0:0:0:70,0:2505,0:-223.685,-21.0721,0,-223.685,-21.0721,-223.685	1/2:65:0,31,34:0:0:31,34:1099,1224:-188.68,-100.007,-90.6747,-89.0285,0,-78.7935	1/1:73:0,73,0:0:0:73,0:2606,0:-233.238,-21.9752,0,-233.238,-21.9752,-233.238	1/1:65:0,64,0:0:0:64,0:2287,0:-203.354,-19.2659,0,-203.354,-19.2659,-203.354	1/1:56:0,55,0:0:0:55,0:1971,0:-175.955,-16.5567,0,-175.955,-16.5567,-175.955	1/1:72:0,70,0:0:0:70,0:2482,0:-221.894,-21.0721,0,-221.894,-21.0721,-221.894	1/2:90:0,35,55:0:0:35,55:1232,1972:-260.472,-160.892,-150.356,-99.9319,0,-83.3753	1/1:28:0,27,0:0:0:27,0:951,0:-84.8395,-8.12781,0,-84.8395,-8.12781,-84.8395	1/2:34:0,22,12:0:0:22,12:758,432:-96.6667,-35.5471,-28.9245,-61.4728,0,-57.8604	1/2:73:0,40,33:0:0:40,33:1419,1176:-210.688,-96.0535,-84.0123,-114.988,0,-105.054	1/2:41:0,19,22:0:0:19,22:682,780:-118.739,-63.5691,-57.8496,-55.5246,0,-48.902	1/1:133:0,133,0:0:0:133,0:4691,0:-418.889,-40.037,0,-418.889,-40.037,-418.889	1/1:101:0,101,0:0:0:101,0:3576,0:-319.353,-30.404,0,-319.353,-30.404,-319.353	1/1:53:0,53,0:0:0:53,0:1895,0:-169.619,-15.9546,0,-169.619,-15.9546,-169.619	1/2:114:0,54,60:0:0:54,60:1907,2143:-328.18,-174.702,-158.446,-153.831,0,-135.769	1/2:62:0,25,36:0:0:25,36:880,1272:-174.597,-103.566,-96.0403,-71.1649,0,-60.3278	1/1:50:0,50,0:0:0:50,0:1769,0:-158.025,-15.0515,0,-158.025,-15.0515,-158.025	1/2:10:0,6,4:0:0:6,4:216,144:-29.5798,-12.0906,-10.2844,-17.8477,0,-16.6436	1/1:6:0,6,0:0:0:6,0:215,0:-19.5671,-1.80618,0,-19.5671,-1.80618,-19.5671	.:.:.:.:.:.:.:.	2/2:2:0,0,2:0:0:0,2:0,68:-6.45092,-6.45092,-6.45092,-0.60206,-0.60206,0	.:.:.:.:.:.:.:.	1/2:230:0,126,103:0:0:126,103:4478,3691:-661.74,-300.387,-262.458,-361.353,0,-330.347	1/1:71:2,68,0:2:72:68,0:2383,0:-206.454,-14.5259,0,-207.056,-20.47,-212.931	1/1:90:0,90,0:0:0:90,0:3164,0:-282.971,-27.0927,0,-282.971,-27.0927,-282.971	2/2:1:0,0,1:0:0:0,1:0,36:-3.59317,-3.59317,-3.59317,-0.30103,-0.30103,0	1/1:87:0,87,0:0:0:87,0:3096,0:-277.058,-26.1896,0,-277.058,-26.1896,-277.058	1/1:40:0,40,0:0:0:40,0:1428,0:-127.714,-12.0412,0,-127.714,-12.0412,-127.714	1/2:43:0,20,23:0:0:20,23:683,828:-122.836,-67.7786,-61.758,-55.4055,0,-48.4818	1/2:97:0,55,42:0:0:55,42:1952,1491:-279.501,-121.623,-105.067,-158.231,0,-145.588	1/2:86:0,41,45:0:0:41,45:1446,1604:-247.203,-130.9,-118.558,-116.655,0,-103.108	1/2:38:0,23,15:0:0:23,15:786,535:-106.865,-43.6142,-36.6905,-63.5984,0,-59.083	1/2:58:0,21,36:0:0:21,36:745,1272:-162.915,-103.187,-96.8655,-59.7393,0,-48.9022	1/1:74:0,73,1:0:0:73,1:2591,36:-231.257,-21.9752,0,-228.324,-18.683,-228.023	1/1:43:0,43,0:0:0:43,0:1517,0:-134.994,-12.9443,0,-134.994,-12.9443,-134.994	1/2:53:0,28,25:0:0:28,25:986,879:-150.926,-71.2551,-62.8263,-80.0202,0,-72.4944	1/2:41:0,28,13:0:0:28,13:1001,468:-119.288,-38.4533,-30.0245,-81.1923,0,-77.2789	1/2:4:0,3,1:0:0:3,1:108,36:-12.0358,-3.29214,-2.38905,-9.10253,0,-8.8015	1/1:40:0,40,0:0:0:40,0:1420,0:-127.154,-12.0412,0,-127.154,-12.0412,-127.154	1/1:26:0,26,0:0:0:26,0:916,0:-80.8931,-7.82678,0,-80.8931,-7.82678,-80.8931	1/2:6:0,2,4:0:0:2,4:64,140:-16.8419,-11.7244,-11.1223,-5.44622,0,-4.2421	1/2:53:0,24,29:0:0:24,29:832,1028:-151.056,-83.9567,-76.7319,-67.4476,0,-58.7177	1/1:23:0,21,2:0:0:21,2:720,72:-64.3722,-6.32163,0,-58.5171,-0.109373,-57.915	1/2:2:0,1,1:0:0:1,1:36,36:-6.19826,-3.29039,-2.98936,-3.26578,0,-2.96475	1/2:4:0,1,3:0:0:1,3:28,108:-11.3481,-9.15289,-8.85186,-2.49466,0,-1.59157	1/2:36:0,22,14:0:0:22,14:742,504:-101.131,-41.4189,-34.7962,-60.0624,0,-55.8479	1/1:100:0,98,0:0:0:98,0:3471,0:-310.189,-29.5009,0,-310.189,-29.5009,-310.189	1/2:7:0,3,4:0:0:3,4:107,144:-20.7484,-12.0906,-11.1875,-9.01417,0,-7.81005	1/1:69:0,69,0:0:0:69,0:2444,0:-218.187,-20.7711,0,-218.187,-20.7711,-218.187	1/1:66:0,65,1:0:0:65,1:2271,36:-201.329,-19.567,0,-198.396,-16.2748,-198.095	1/1:52:0,52,0:0:0:52,0:1824,0:-163.364,-15.6536,0,-163.364,-15.6536,-163.364	1/1:34:0,34,0:0:0:34,0:1208,0:-108.295,-10.235,0,-108.295,-10.235,-108.295	1/1:68:0,67,1:0:0:67,1:2352,36:-209.496,-20.169,0,-206.563,-16.8769,-206.262	1/1:45:0,45,0:0:0:45,0:1570,0:-140.679,-13.5464,0,-140.679,-13.5464,-140.679	1/1:31:0,31,0:0:0:31,0:1102,0:-98.8119,-9.33193,0,-98.8119,-9.33193,-98.8119	1/1:46:0,46,0:0:0:46,0:1620,0:-144.499,-13.8474,0,-144.499,-13.8474,-144.499	1/1:76:0,75,0:0:0:75,0:2675,0:-238.226,-22.5773,0,-238.226,-22.5773,-238.226	1/2:14:0,8,6:0:0:8,6:286,216:-41.0521,-17.9609,-15.5527,-23.4483,0,-21.6421	1/1:40:0,40,0:0:0:40,0:1420,0:-127.098,-12.0412,0,-127.098,-12.0412,-127.098	1/2:58:0,28,30:0:0:28,30:987,1072:-167.498,-87.6365,-79.2077,-80.2151,0,-71.1842	1/2:93:0,41,52:0:0:41,52:1439,1836:-265.603,-149.338,-136.995,-116.615,0,-100.961	1/1:49:0,49,0:0:0:49,0:1733,0:-155.131,-14.7505,0,-155.131,-14.7505,-155.131	1/1:67:0,67,0:0:0:67,0:2362,0:-210.435,-20.169,0,-210.435,-20.169,-210.435	1/1:48:0,48,0:0:0:48,0:1704,0:-151.383,-14.4494,0,-151.383,-14.4494,-151.383	1/2:7:0,1,6:0:0:1,6:36,212:-20.5091,-17.5934,-17.2923,-3.2724,0,-1.46622	1/1:41:0,41,0:0:0:41,0:1438,0:-128.506,-12.3422,0,-128.506,-12.3422,-128.506	1/1:48:0,48,0:0:0:48,0:1702,0:-152.367,-14.4494,0,-152.367,-14.4494,-152.367	1/1:131:0,130,0:0:0:130,0:4565,0:-408.019,-39.1339,0,-408.019,-39.1339,-408.019	1/1:111:0,108,3:0:0:108,3:3831,108:-341.879,-32.5112,0,-333.077,-23.3502,-332.174	1/1:76:0,76,0:0:0:76,0:2694,0:-240.974,-22.8783,0,-240.974,-22.8783,-240.974	1/2:97:0,54,43:0:0:54,43:1918,1544:-280.743,-125.665,-109.41,-155.433,0,-142.489	1/1:152:0,149,2:0:0:149,2:5277,72:-471.011,-44.8535,0,-465.145,-38.9627,-464.543	1/2:52:0,26,26:0:0:26,26:933,932:-151.261,-76.0767,-68.2499,-75.5402,0,-67.7134	1/1:72:1,71,0:1:36:71,0:2473,0:-217.862,-18.0759,0,-218.163,-21.3731,-221.101	1/1:66:0,66,0:0:0:66,0:2347,0:-209.777,-19.868,0,-209.777,-19.868,-209.777	1/1:34:0,34,0:0:0:34,0:1193,0:-106.981,-10.235,0,-106.981,-10.235,-106.981	1/2:80:0,42,38:0:0:42,38:1492,1335:-229.002,-108.36,-95.7168,-120.993,0,-109.554	1/2:66:0,24,42:0:0:24,42:830,1484:-188.008,-121.017,-113.793,-67.3372,0,-54.694	1/1:41:0,41,0:0:0:41,0:1436,0:-128.666,-12.3422,0,-128.666,-12.3422,-128.666	1/1:142:0,142,0:0:0:142,0:5006,0:-447.774,-42.7463,0,-447.774,-42.7463,-447.774
chr06	5528644	.	TGAG	CGAA,CGAG	306884	PASS	AB=0.507536,0.487767;ABP=5.5303,9.65138;AC=142,46;AF=0.755319,0.244681;AN=188;AO=9717,2531;CIGAR=1X2M1X,1X3M;DP=12291;DPB=12291.2;DPRA=132.151,0.942557;EPP=280.836,44.9135;EPPR=3.32051;GTI=2;LEN=4,1;MEANALT=1.98925,2.39344;MQM=38.8663,46.5302;MQMR=60;NS=94;NUMALT=2;ODDS=1.68962;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=339577,89138;QR=245;RO=7;RPL=73,22;RPP=20473.9,5309.58;RPPR=18.2106;RPR=9644,2509;RUN=1,1;SAF=4374,1177;SAP=212.841,29.889;SAR=5343,1354;SRF=3;SRP=3.32051;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:57:0,27,29:0:0:27,29:945,1019:-149.411,-81.2799,-73.1521,-68.1032,0,-59.3733	1/1:150:0,150,0:0:0:150,0:5265,0:-441.337,-45.1545,0,-441.337,-45.1545,-441.337	1/2:191:0,98,93:0:0:98,93:3411,3293:-504.054,-263.086,-233.585,-241.296,0,-213.3	1/1:166:0,166,0:0:0:166,0:5779,0:-481.857,-49.971,0,-481.857,-49.971,-481.857	1/2:77:0,31,45:0:0:31,45:1107,1586:-207.613,-126.759,-117.427,-80.8282,0,-67.2818	1/2:96:0,52,43:0:0:52,43:1854,1502:-262.318,-120.042,-104.388,-142.258,0,-129.313	1/1:105:0,105,0:0:0:105,0:3665,0:-305.189,-31.6082,0,-305.189,-31.6082,-305.189	1/2:168:0,86,82:0:0:86,82:2990,2906:-457.144,-232.515,-206.626,-224.965,0,-200.281	1/2:126:0,62,64:0:0:62,64:2194,2241:-342.552,-179.801,-161.137,-163.086,0,-143.82	1/2:121:0,71,49:0:0:71,49:2487,1746:-330.36,-139.589,-118.216,-190.766,0,-176.015	1/2:213:0,119,93:0:0:119,93:4162,3231:-560.708,-255.514,-219.692,-305.21,0,-277.215	1/1:173:0,173,0:0:0:173,0:5987,0:-497.235,-52.0782,0,-497.235,-52.0782,-497.235	1/2:197:0,99,98:0:0:99,98:3504,3475:-536.07,-277.8,-247.998,-258.606,0,-229.105	1/2:190:0,105,84:0:0:105,84:3654,2886:-484.389,-228.426,-196.817,-256.046,0,-230.76	1/1:149:0,146,1:0:0:146,1:5100,36:-428.749,-43.9504,0,-425.822,-40.9988,-425.521	1/2:159:0,87,71:0:0:87,71:3056,2501:-416.301,-199.71,-173.52,-216.592,0,-195.219	1/1:202:0,202,0:0:0:202,0:7092,0:-568.736,-60.8081,0,-568.736,-60.8081,-568.736	1/1:154:0,152,1:0:0:152,1:5349,36:-433.009,-45.7566,0,-430.177,-42.9296,-429.876	1/1:151:0,150,1:0:0:150,1:5242,36:-424.032,-45.1545,0,-421.2,-41.9748,-420.899	1/1:121:0,121,0:0:0:121,0:4263,0:-362.931,-36.4246,0,-362.931,-36.4246,-362.931	1/2:200:0,97,102:0:0:97,102:3319,3581:-523.974,-286.785,-257.585,-237.195,0,-206.49	1/1:40:0,39,0:0:0:39,0:1376,0:-119.803,-11.7402,0,-119.803,-11.7402,-119.803	1/2:59:0,28,31:0:0:28,31:978,1104:-164.881,-87.9855,-79.5567,-77.2385,0,-67.9066	1/2:138:0,73,64:0:0:73,64:2570,2257:-367.489,-180.528,-158.553,-186.935,0,-167.669	1/2:75:1,40,34:1:36:40,34:1410,1193:-194.896,-92.3437,-83.2403,-99.8888,0,-92.5922	1/1:273:0,272,0:0:0:272,0:9513,0:-811.861,-81.8802,0,-811.861,-81.8802,-811.861	1/1:230:0,230,0:0:0:230,0:8051,0:-644.655,-69.2369,0,-644.655,-69.2369,-644.655	1/1:92:0,92,0:0:0:92,0:3233,0:-268.364,-27.6948,0,-268.364,-27.6948,-268.364	1/2:221:0,110,110:0:0:110,110:3820,3906:-604.707,-311.575,-278.462,-293.112,0,-259.998	1/2:104:0,43,61:0:0:43,61:1511,2168:-285.617,-174.162,-161.218,-111.788,0,-93.425	1/1:147:0,145,2:0:0:145,2:5057,72:-418.406,-43.6494,0,-412.79,-37.6879,-412.188	1/2:13:0,9,4:0:0:9,4:317,144:-36.0211,-12.0906,-9.38135,-24.2805,0,-23.0764	1/1:19:0,18,1:0:0:18,1:645,36:-50.5531,-5.41854,0,-47.7196,-2.23887,-47.4186	2/2:1:0,0,1:0:0:0,1:0,36:-3.4807,-3.4807,-3.4807,-0.30103,-0.30103,0	2/2:11:0,1,10:0:0:1,10:36,352:-30.9306,-28.5531,-28.2521,-3.0103,-0.330578,0	1/1:10:0,10,0:0:0:10,0:329,0:-26.1109,-3.0103,0,-26.1109,-3.0103,-26.1109	1/2:423:1,223,197:1:35:223,197:7791,6939:-1152.48,-551.112,-486.83,-598.832,0,-542.377	1/1:142:2,139,0:2:66:139,0:4861,0:-390.814,-36.4637,0,-391.416,-41.8432,-396.752	1/1:203:0,203,0:0:0:203,0:7134,0:-576.67,-61.1091,0,-576.67,-61.1091,-576.67	1/2:3:0,1,2:0:0:1,2:30,72:-8.21843,-6.11811,-5.81708,-2.39816,0,-1.7961	1/1:152:0,150,1:0:0:150,1:5237,36:-434.199,-45.1545,0,-431.368,-42.3288,-431.067	1/1:103:0,103,0:0:0:103,0:3613,0:-288.99,-31.0061,0,-288.99,-31.0061,-288.99	1/2:104:0,50,54:0:0:50,54:1758,1888:-275.719,-150.505,-135.454,-125.54,0,-109.284	1/2:199:0,106,92:0:0:106,92:3721,3246:-539.373,-258.512,-226.602,-280.908,0,-253.214	1/2:165:1,76,88:1:36:76,88:2667,3103:-447.082,-244.758,-224.817,-199.666,0,-176.113	1/2:68:1,40,27:1:36:40,27:1388,967:-181.755,-73.9231,-64.8197,-105.179,0,-99.9893	1/2:99:0,45,54:0:0:45,54:1575,1893:-267.843,-152.315,-138.769,-115.859,0,-99.603	1/1:163:0,157,4:0:0:157,4:5457,144:-456.536,-47.2617,0,-445.179,-35.9113,-443.974	1/1:88:0,88,0:0:0:88,0:3080,0:-258.086,-26.4906,0,-258.086,-26.4906,-258.086	1/2:125:0,59,66:0:0:59,66:2086,2335:-339.641,-184.842,-167.081,-155.134,0,-135.266	1/2:90:0,59,31:0:0:59,31:2070,1089:-245.46,-86.9533,-69.1925,-158.846,0,-149.515	1/2:16:0,9,7:0:0:9,7:316,233:-42.0579,-18.6774,-15.9682,-23.7041,0,-21.5969	1/1:138:0,137,0:0:0:137,0:4765,0:-378.856,-41.2411,0,-378.856,-41.2411,-378.856	1/1:61:0,61,0:0:0:61,0:2131,0:-180.178,-18.3628,0,-180.178,-18.3628,-180.178	1/2:19:0,3,16:0:0:3,16:100,564:-52.6435,-45.0739,-44.1708,-7.88837,0,-3.07189	1/2:123:0,56,67:0:0:56,67:19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chr06	5550754	.	AGCCA	AGCCC	108361	PASS	AB=0.525311;ABP=16.4212;AC=142;AF=0.755319;AN=188;AO=5081;CIGAR=4M1X;DP=6284;DPB=6290.2;DPRA=68.2826;EPP=11036.3;EPPR=2485;GTI=3;LEN=1;MEANALT=1.5;MQM=59.9081;MQMR=59.9773;NS=94;NUMALT=1;ODDS=4.51591;PAIRED=0;PAIREDR=0;PAO=12;PQA=362.5;PQR=0;PRO=0;QA=180638;QR=39754;RO=1143;RPL=0;RPP=11036.3;RPPR=2485;RPR=5081;RUN=1;SAF=5081;SAP=11036.3;SAR=0;SRF=1143;SRP=2485;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:11,7:11:375:7:252:-17.6104,0,-28.6598	1/1:116:0,116:0:0:116:4099:-369.097,-34.9195,0	0/1:110:63,46:63:2190:46:1616:-112.557,0,-164.194	1/1:138:0,138:0:0:138:4902:-441.335,-41.5421,0	0/1:25:13,12:13:466:12:416:-30.2459,0,-34.753	0/1:35:15,20:15:516:20:692:-52.0653,0,-36.2285	1/1:151:0,150:0:0:150:5352:-481.328,-45.1545,0	0/1:59:28,31:28:992:31:1100:-81.5319,0,-71.8339	0/1:23:14,9:14:464:9:324:-22.5822,0,-35.1524	0/1:49:27,22:27:950:22:776:-55.4117,0,-71.0648	0/1:86:43,42:43:1519:42:1492:-108.51,0,-110.939	1/1:58:0,57:0:0:57:2020:-181.698,-17.1587,0	0/1:44:25,18:25:879:18:632:-43.9031,0,-66.1239	0/1:85:38,46:38:1344:46:1636:-121.99,0,-95.7215	1/1:35:1,34:1:30:34:1201:-105.277,-7.53648,0	0/1:64:33,30:33:1163:30:1076:-77.8282,0,-85.653	1/1:91:0,89:0:0:89:3134:-281.051,-26.7917,0	1/1:38:1,37:1:33:37:1316:-115.435,-8.14001,0	1/1:52:0,50:0:0:50:1776:-159.763,-15.0515,0	1/1:179:2,177:2:72:177:6323:-562.323,-47.0476,0	0/1:109:33,76:33:1166:76:2700:-210.433,0,-72.4355	1/1:59:0,59:0:0:59:2100:-189.246,-17.7608,0	0/1:20:10,9:10:340:9:320:-23.1983,0,-24.987	0/1:92:50,41:50:1771:41:1460:-103.952,0,-131.929	0/1:60:29,31:29:1001:31:1100:-81.2485,0,-72.3375	1/1:137:0,137:0:0:137:4892:-440.373,-41.2411,0	1/1:155:0,154:0:0:154:5472:-492.24,-46.3586,0	1/1:25:0,22:0:0:22:788:-70.8852,-6.62266,0	0/1:218:65,153:65:2168:153:5448:-424.826,0,-129.765	0/1:89:45,44:45:1556:44:1576:-115.34,0,-113.521	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:9:4,5:4:135:5:176:-13.4757,0,-9.77324	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:6,3:6:207:3:108:-7.3659,0,-16.2579	1/1:21:0,21:0:0:21:735:-66.4714,-6.32163,0	0/1:103:30,72:30:1044:72:2572:-200.664,0,-63.2053	1/1:106:2,104:2:67:104:3688:-325.764,-25.5469,0	1/1:62:0,61:0:0:61:2150:-193.407,-18.3628,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:114:1,113:1:35:113:4019:-358.402,-30.8188,0	1/1:38:0,38:0:0:38:1344:-121.26,-11.4391,0	0/1:93:52,40:52:1809:40:1416:-99.6926,0,-135.045	0/1:43:24,19:24:818:19:672:-47.8056,0,-60.9305	0/1:51:21,30:21:719:30:1080:-82.1607,0,-49.6751	0/1:45:22,23:22:752:23:808:-59.4362,0,-54.3914	0/1:73:36,37:36:1230:37:1308:-96.0463,0,-89.0236	1/1:66:1,65:1:36:65:2324:-205.821,-16.2697,0	1/1:54:1,53:1:27:53:1892:-167.74,-13.5558,0	0/1:76:36,38:36:1272:38:1348:-98.9845,0,-92.1472	0/1:160:54,105:54:1894:105:3729:-287.587,0,-122.515	0/1:8:1,7:1:36:7:244:-19.8912,0,-1.19003	1/1:111:0,108:0:0:108:3828:-344.371,-32.5112,0	1/1:33:0,33:0:0:33:1184:-106.867,-9.93399,0	0/1:24:20,3:20:714:3:108:-2.79165,0,-57.3038	0/1:73:29,43:29:996:43:1528:-115.755,0,-67.915	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:10:7,3:7:241:3:108:-7.06487,0,-19.0156	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:66:37,29:37:1293:29:1032:-73.3255,0,-96.8026	1/1:107:0,106:0:0:106:3732:-335.721,-31.9092,0	0/1:6:5,1:5:172:1:36:-1.79209,0,-14.0117	1/1:60:0,58:0:0:58:2060:-185.352,-17.4597,0	1/1:98:0,98:0:0:98:3496:-314.766,-29.5009,0	1/1:102:0,102:0:0:102:3640:-327.798,-30.7051,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:67:0,67:0:0:67:2390:-215.288,-20.169,0	1/1:54:0,54:0:0:54:1912:-172.358,-16.2556,0	1/1:52:0,51:0:0:51:1805:-162.37,-15.3525,0	1/1:92:2,88:2:63:88:3117:-274.741,-21.4463,0	1/1:48:0,43:0:0:43:1536:-138.163,-12.9443,0	0/1:20:9,11:9:296:11:392:-29.5995,0,-20.9378	1/1:144:0,143:0:0:143:5060:-454.666,-43.0473,0	0/1:58:32,26:32:1120:26:932:-66.7391,0,-83.6472	0/1:48:24,22:24:832:22:788:-57.0377,0,-60.9897	1/1:113:0,112:0:0:112:4010:-360.51,-33.7154,0	1/1:121:0,120:0:0:120:4255:-382.765,-36.1236,0	1/1:53:3,49:3:107:49:1740:-146.902,-6.03039,0	0/1:8:5,3:5:163:3:108:-7.66693,0,-12.5832	1/1:57:0,55:0:0:55:1956:-175.956,-16.5567,0	1/1:115:2,112:2:67:112:3988:-352.727,-28.3058,0	1/1:158:0,158:0:0:158:5636:-506.951,-47.5627,0	1/1:54:0,54:0:0:54:1928:-173.679,-16.2556,0	1/1:69:0,66:0:0:66:2356:-211.971,-19.868,0	0/1:50:25,23:25:880:23:820:-58.3738,0,-64.7096	1/1:74:0,73:0:0:73:2588:-232.809,-21.9752,0	0/1:33:13,19:13:460:19:676:-51.1754,0,-31.743	1/1:68:0,68:0:0:68:2420:-217.938,-20.47,0	1/1:63:0,62:0:0:62:2216:-199.355,-18.6639,0	1/1:64:0,61:0:0:61:2172:-195.386,-18.3628,0	0/1:112:57,54:57:2002:54:1924:-139.663,0,-146.679	0/1:41:29,12:29:1020:12:413:-25.1556,0,-79.7692	1/1:34:1,33:1:36:33:1172:-101.696,-6.63675,0	1/1:72:0,72:0:0:72:2568:-231.368,-21.6742,0
chr06	5550806	.	G	A	311677	PASS	AB=0.551239;ABP=118.057;AC=143;AF=0.760638;AN=188;AO=11355;CIGAR=1X;DP=13648;DPB=13648;DPRA=146.742;EPP=24660.1;EPPR=4971.34;GTI=5;LEN=1;MEANALT=1.05376;MQM=59.9515;MQMR=59.9847;NS=94;NUMALT=1;ODDS=1.3572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=403861;QR=80462;RO=2288;RPL=5184;RPP=189.305;RPPR=11.7569;RPR=6171;RUN=1;SAF=5184;SAP=189.305;SAR=6171;SRF=1096;SRP=11.7569;SRR=1192;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:26,34:26:928:34:1220:-92.045,0,-65.7765	1/1:221:1,220:1:32:220:7803:-699.097,-63.3283,0	0/1:245:121,124:121:4215:124:4452:-327.097,0,-305.784	1/1:307:2,305:2:63:305:10892:-974.197,-86.4331,0	0/1:57:31,26:31:1099:26:909:-64.9647,0,-82.0607	0/1:108:48,60:48:1693:60:2132:-159.637,0,-120.143	1/1:349:1,348:1:36:348:12412:-1113.32,-101.461,0	0/1:175:69,106:69:2436:106:3778:-287.539,0,-166.814	0/1:88:43,45:43:1528:45:1574:-115.458,0,-111.322	0/1:132:62,70:62:2161:70:2466:-182.457,0,-155.018	0/1:138:68,70:68:2362:70:2501:-183.8,0,-171.295	1/1:119:0,119:0:0:119:4182:-376.557,-35.8226,0	0/1:106:57,49:57:1990:49:1721:-123.261,0,-147.462	0/1:140:67,73:67:2334:73:2609:-192.909,0,-168.174	1/1:70:0,70:0:0:70:2481:-223.542,-21.0721,0	0/1:111:50,61:50:1748:61:2143:-159.721,0,-124.187	1/1:169:0,169:0:0:169:6020:-541.408,-50.8741,0	1/1:86:0,86:0:0:86:3059:-275.53,-25.8886,0	1/1:88:0,88:0:0:88:3121:-281.117,-26.4906,0	1/1:398:2,396:2:72:396:14095:-1261.37,-112.973,0	0/1:214:91,123:91:3203:123:4347:-326.985,0,-224.074	1/1:177:0,177:0:0:177:6265:-563.893,-53.2823,0	0/1:57:27,30:27:944:30:1059:-78.4609,0,-68.1126	0/1:220:117,103:117:4104:103:3671:-264.368,0,-303.322	0/1:165:73,92:73:2507:92:3259:-243.863,0,-176.209	1/1:319:0,319:0:0:319:11374:-1023.54,-96.0286,0	1/1:304:1,303:1:32:303:10781:-966.988,-88.3138,0	1/1:59:0,59:0:0:59:2098:-189.088,-17.7608,0	0/1:349:109,240:109:3883:240:8537:-663.271,0,-244.606	0/1:164:71,93:71:2517:93:3306:-248.384,0,-177.282	1/1:126:0,126:0:0:126:4479:-403.28,-37.9298,0	0/1:22:5,17:5:176:17:608:-48.4294,0,-9.56236	1/1:33:0,33:0:0:33:1165:-105.156,-9.93399,0	0/1:8:3,5:3:108:5:171:-13.3172,0,-7.66693	0/1:15:10,5:10:351:5:180:-12.0366,0,-27.4112	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:200:68,132:68:2364:132:4663:-359.628,0,-152.813	1/1:244:1,243:1:36:243:8662:-775.974,-69.853,0	1/1:108:0,108:0:0:108:3835:-345.347,-32.5112,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:300:0,300:0:0:300:10696:-962.547,-90.309,0	1/1:73:0,73:0:0:73:2606:-234.788,-21.9752,0	0/1:202:90,112:90:3189:112:3975:-297.133,0,-226.426	0/1:88:43,45:43:1509:45:1575:-115.388,0,-109.61	0/1:92:38,54:38:1320:54:1904:-143.94,0,-91.4019	0/1:120:55,65:55:1941:65:2307:-171.767,0,-138.841	0/1:171:71,98:71:2508:98:3492:-263.331,0,-174.81	1/1:208:1,207:1:36:207:7401:-662.536,-59.016,0	1/1:168:0,168:0:0:168:6013:-541.274,-50.573,0	0/1:158:72,85:72:2522:85:3032:-225.488,0,-179.609	0/1:288:116,172:116:4128:172:6145:-466.452,0,-285.007	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	1/1:264:0,264:0:0:264:9431:-848.721,-79.4719,0	1/1:81:1,80:1:36:80:2847:-252.869,-20.7852,0	0/1:49:25,24:25:892:24:856:-62.6106,0,-65.8492	0/1:152:66,86:66:2334:86:3047:-228.702,0,-164.563	1/1:39:0,39:0:0:39:1388:-124.848,-11.7402,0	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:116:59,57:59:2086:57:2013:-146.522,0,-153.09	1/1:209:3,206:3:108:206:7325:-649.228,-52.8401,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:189:0,189:0:0:189:6698:-602.888,-56.8947,0	1/1:230:0,230:0:0:230:8180:-736.189,-69.2369,0	1/1:172:0,172:0:0:172:6110:-549.98,-51.7772,0	1/1:97:0,97:0:0:97:3469:-312.42,-29.1999,0	1/1:194:1,193:1:27:193:6851:-613.939,-55.7,0	1/1:187:0,187:0:0:187:6638:-597.501,-56.2926,0	1/1:71:0,71:0:0:71:2534:-228.312,-21.3731,0	1/1:180:0,180:0:0:180:6373:-573.663,-54.1854,0	1/1:111:0,111:0:0:111:3935:-354.342,-33.4143,0	0/1:42:21,20:21:752:20:699:-50.6547,0,-55.4569	1/1:276:1,275:1:36:275:9753:-873.542,-79.5358,0	0/1:117:62,55:62:2184:55:1955:-141.004,0,-161.604	0/1:170:68,101:68:2397:101:3583:-271.443,0,-164.753	1/1:260:1,259:1:36:259:9234:-827.434,-74.6695,0	1/1:204:3,201:3:108:201:7172:-635.454,-51.335,0	1/1:134:3,131:3:99:131:4655:-409.875,-31.1014,0	0/1:23:14,9:14:495:9:324:-22.5822,0,-37.9593	1/1:151:0,151:0:0:151:5374:-483.793,-45.4555,0	1/1:249:2,247:2:64:247:8839:-789.415,-68.8778,0	1/1:356:1,355:1:36:355:12643:-1133.97,-103.568,0	1/1:126:0,126:0:0:126:4456:-401.214,-37.9298,0	1/1:113:0,113:0:0:113:4035:-363.338,-34.0164,0	0/1:120:65,55:65:2258:55:1929:-137.44,0,-167.358	1/1:164:1,163:1:36:163:5770:-515.82,-45.7706,0	0/1:53:24,29:24:855:29:1024:-76.518,0,-61.3156	1/1:120:1,119:1:36:119:4218:-376.203,-32.5253,0	1/1:125:0,125:0:0:125:4483:-403.638,-37.6288,0	1/1:94:0,94:0:0:94:3368:-303.334,-28.2968,0	0/1:173:80,93:80:2819:93:3307:-245.77,0,-201.871	0/1:82:51,31:51:1793:31:1091:-73.8131,0,-136.966	1/1:98:1,97:1:36:97:3432:-305.493,-25.9027,0	1/1:154:0,154:0:0:154:5494:-494.582,-46.3586,0
chr06	5565480	.	A	G	149132	PASS	AB=0.491792;ABP=13.6681;AC=44;AF=0.234043;AN=188;AO=8981;CIGAR=1X;DP=28392;DPB=28392;DPRA=2.51108;EPP=19505;EPPR=42116.5;GTI=5;LEN=1;MEANALT=1.21818;MQM=59.7565;MQMR=59.9785;NS=94;NUMALT=1;ODDS=3.24038;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=319870;QR=694532;RO=19394;RPL=8981;RPP=19505;RPPR=42116.5;RPR=0;RUN=1;SAF=8981;SAP=19505;SAR=0;SRF=19394;SRP=42116.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:29,12:29:1044:12:432:-26.879,0,-81.9326	0/0:278:278,0:278:9943:0:0:0,-83.6863,-894.81	0/1:204:107,97:107:3828:97:3452:-249.474,0,-283.307	0/0:283:283,0:283:10172:0:0:0,-85.1915,-915.399	0/1:134:80,54:80:2852:54:1940:-134.534,0,-216.581	0/1:71:46,25:46:1648:25:888:-58.8659,0,-127.235	0/0:170:170,0:170:6072:0:0:0,-51.1751,-546.584	0/1:212:89,123:89:3196:123:4386:-331.089,0,-224.044	0/1:80:42,38:42:1508:38:1345:-96.8367,0,-111.932	0/1:135:82,53:82:2936:53:1896:-130.278,0,-223.835	0/1:329:176,153:176:6284:153:5405:-387.528,0,-466.617	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/1:65:41,24:41:1468:24:848:-57.0694,0,-112.849	0/1:46:15,31:15:528:31:1082:-83.8398,0,-34.004	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/1:50:25,25:25:884:25:892:-65.5436,0,-64.8269	0/0:60:60,0:60:2147:0:0:0,-18.0618,-193.497	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.956	0/0:205:205,0:205:7321:0:0:0,-61.7111,-658.94	0/0:286:286,0:286:10267:0:0:0,-86.0946,-923.951	0/1:180:102,78:102:3645:78:2796:-197.675,0,-274.068	0/0:284:283,1:283:10147:1:32:0,-82.2932,-909.959	0/1:173:96,76:96:3440:76:2722:-193.061,0,-257.658	0/1:184:104,80:104:3719:80:2843:-200.706,0,-279.522	0/1:108:53,55:53:1900:55:1967:-144.793,0,-138.767	0/0:407:404,3:404:14438:3:108:0,-112.444,-1289.09	0/0:240:240,0:240:8612:0:0:0,-72.2472,-775.073	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:403:211,192:211:7576:192:6861:-496.155,0,-560.56	0/1:390:208,182:208:7449:182:6546:-471.751,0,-553.05	0/0:222:222,0:222:7941:0:0:0,-66.8287,-714.712	0/1:1009:459,549:459:16459:549:19549:-1455.04,0,-1177.17	0/0:954:951,2:951:34051:2:72:0,-280.405,-3055.81	0/1:1419:697,719:697:24986:719:25643:-1880.13,0,-1821.4	0/1:1587:760,825:760:27204:825:29344:-2162.34,0,-1970.07	0/0:859:854,5:854:30626:5:180:0,-242.033,-2738.84	0/1:159:78,81:78:2800:81:2872:-210.85,0,-204.376	0/0:300:299,1:299:10676:1:36:0,-86.7107,-957.144	0/0:459:459,0:459:16413:0:0:0,-138.173,-1476.83	0/1:937:438,499:438:15692:499:17782:-1317.76,0,-1129.91	0/0:231:231,0:231:8287:0:0:0,-69.5379,-745.836	0/0:257:256,0:256:9166:0:0:0,-77.0637,-824.551	0/1:269:156,113:156:5576:113:4046:-283.322,0,-420.987	0/1:56:34,22:34:1204:22:780:-53.6654,0,-91.8082	0/1:68:32,36:32:1144:36:1296:-96.4716,0,-82.7995	0/1:184:74,109:74:2630:109:3878:-293.761,0,-181.499	0/1:200:91,109:91:3264:109:3859:-287.296,0,-233.774	0/0:264:264,0:264:9460:0:0:0,-79.4719,-851.356	0/0:191:191,0:191:6827:0:0:0,-57.4967,-614.499	0/1:229:114,115:114:4096:115:4082:-298.603,0,-299.888	0/1:195:111,83:111:3959:83:2944:-206.431,0,-297.185	0/1:1131:542,588:542:19445:588:20969:-1545.55,0,-1409.06	0/0:201:201,0:201:7187:0:0:0,-60.507,-646.886	0/0:72:71,1:71:2548:1:36:0,-18.0759,-225.972	0/1:1446:808,636:808:28908:636:22668:-1603.95,0,-2165.68	0/1:154:87,67:87:3120:67:2383:-168.358,0,-234.668	0/0:71:70,1:70:2489:1:36:0,-17.7749,-220.664	0/1:1159:603,556:603:21660:556:19833:-1435.52,0,-1599.88	0/1:1191:622,569:622:22284:569:20204:-1459.14,0,-1646.45	0/1:95:37,58:37:1324:58:2057:-156.795,0,-90.8642	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/1:856:455,401:455:16320:401:14271:-1026.3,0,-1210.78	0/0:239:239,0:239:8572:0:0:0,-71.9462,-771.475	0/0:313:309,3:309:11068:3:105:0,-84.4839,-986.21	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:145:145,0:145:5204:0:0:0,-43.6493,-468.493	0/0:300:297,3:297:10632:3:99:0,-81.0724,-947.385	0/0:158:156,2:156:5592:2:72:0,-40.726,-496.56	0/0:200:200,0:200:7150:0:0:0,-60.206,-643.557	0/0:84:84,0:84:2993:0:0:0,-25.2865,-269.601	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/1:820:460,360:460:16465:360:12812:-905.804,0,-1234.67	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084	0/1:81:44,37:44:1576:37:1324:-95.072,0,-117.748	0/1:188:99,89:99:3552:89:3180:-228.633,0,-263.294	0/0:235:235,0:235:8405:0:0:0,-70.742,-756.453	0/0:207:206,1:206:7386:1:36:0,-58.7149,-661.186	0/0:148:148,0:148:5300:0:0:0,-44.5524,-477.135	0/1:1091:520,570:520:18625:570:20367:-1503.89,0,-1346.84	0/0:151:151,0:151:5416:0:0:0,-45.4555,-487.569	0/0:151:151,0:151:5408:0:0:0,-45.4555,-486.85	0/0:265:265,0:265:9500:0:0:0,-79.7729,-854.911	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:71:32,39:32:1152:39:1392:-104.206,0,-82.617	0/0:112:112,0:112:3993:0:0:0,-33.7154,-359.56	0/1:43:19,24:19:676:24:856:-64.4168,0,-48.2237	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:77:77,0:77:2730:0:0:0,-23.1793,-245.943	0/0:229:229,0:229:8158:0:0:0,-68.9359,-734.239	0/1:691:331,359:331:11838:359:12714:-935.952,0,-857.21	0/1:81:34,47:34:1212:47:1652:-124.577,0,-85.0029	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:88:88,0:88:3156:0:0:0,-26.4906,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chr06	5565490	.	C	A	147597	PASS	AB=0.505127;ABP=7.01826;AC=44;AF=0.234043;AN=188;AO=8897;CIGAR=1X;DP=27156;DPB=27156;DPRA=2.36754;EPP=19322.6;EPPR=39636.7;GTI=6;LEN=1;MEANALT=1.11864;MQM=59.7546;MQMR=59.9895;NS=94;NUMALT=1;ODDS=2.20466;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=315658;QR=621427;RO=18252;RPL=8897;RPP=19322.6;RPPR=39636.7;RPR=0;RUN=1;SAF=8897;SAP=19322.6;SAR=0;SRF=18252;SRP=39636.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:26,13:26:891:13:464:-30.3573,0,-68.759	0/0:261:260,1:260:8785:1:36:0,-74.9706,-787.085	0/1:196:100,96:100:3427:96:3424:-249.363,0,-249.646	0/0:273:273,0:273:9430:0:0:0,-82.1812,-848.689	0/1:128:74,54:74:2495:54:1902:-132.92,0,-186.268	0/1:63:40,23:40:1312:23:820:-55.1576,0,-99.4023	0/0:155:155,0:155:5264:0:0:0,-46.6596,-473.908	0/1:203:87,116:87:2890:116:4108:-308.793,0,-199.224	0/1:79:40,39:40:1382:39:1387:-101.343,0,-100.894	0/1:128:76,52:76:2564:52:1828:-126.263,0,-192.437	0/1:320:165,155:165:5407:155:5481:-397.068,0,-390.457	0/0:54:54,0:54:1836:0:0:0,-16.2556,-165.516	0/1:60:36,24:36:1205:24:838:-57.6712,0,-90.6829	0/1:43:14,29:14:445:29:1027:-79.7979,0,-27.4108	0/0:55:55,0:55:1817:0:0:0,-16.5566,-163.802	0/1:43:21,22:21:705:22:779:-57.4832,0,-50.8186	0/0:59:59,0:59:1981:0:0:0,-17.7608,-178.56	0/0:43:43,0:43:1370:0:0:0,-12.9443,-123.578	0/0:190:190,0:190:6402:0:0:0,-57.1957,-576.3	0/0:269:269,0:269:9251:0:0:0,-80.9771,-832.586	0/1:172:91,81:91:3110:81:2869:-206.523,0,-228.352	0/0:259:259,0:259:8801:0:0:0,-77.9668,-792.117	0/1:162:89,73:89:3037:73:2592:-184.739,0,-224.795	0/1:179:100,79:100:3476:79:2792:-197.627,0,-259.171	0/1:103:51,52:51:1689:52:1855:-136.223,0,-121.277	0/0:378:375,3:375:12805:3:108:0,-103.714,-1142.25	0/0:232:232,0:232:7997:0:0:0,-69.839,-719.776	0/0:37:37,0:37:1247:0:0:0,-11.1381,-112.526	0/1:389:198,191:198:6835:191:6775:-492.649,0,-498.137	0/1:378:201,177:201:6922:177:6263:-449.914,0,-509.278	0/0:212:212,0:212:7238:0:0:0,-63.8184,-651.495	0/1:974:433,540:433:14714:540:19155:-1430.14,0,-1030.81	0/0:915:912,3:912:31330:3:108:0,-265.367,-2808.82	0/1:1383:658,724:658:22375:724:25676:-1893.34,0,-1596.91	0/1:1544:723,821:723:24676:821:29203:-2162.28,0,-1755.47	0/0:828:822,5:822:27912:5:171:0,-233.55,-2495.71	0/1:148:69,79:69:2299:79:2777:-205.615,0,-162.617	0/0:283:283,0:283:9693:0:0:0,-85.1915,-872.357	0/0:420:420,0:420:13891:0:0:0,-126.433,-1250.07	0/1:906:417,489:417:14290:489:17416:-1294.18,0,-1013.19	0/0:219:218,1:218:7543:1:36:0,-62.3273,-675.335	0/0:243:243,0:243:8139:0:0:0,-73.1503,-732.575	0/1:260:145,115:145:4936:115:4068:-288.012,0,-366.131	0/1:54:30,24:30:1004:24:837:-59.3902,0,-74.4071	0/1:66:30,36:30:1043:36:1288:-96.3533,0,-74.3109	0/1:178:68,110:68:2313:110:3911:-298.598,0,-154.842	0/1:194:84,110:84:2897:110:3901:-292.879,0,-202.569	0/0:249:249,0:249:8605:0:0:0,-74.9565,-774.473	0/0:186:186,0:186:6304:0:0:0,-55.9916,-567.469	0/1:221:108,113:108:3654:113:4004:-293.996,0,-262.539	0/1:186:101,85:101:3456:85:3007:-214.865,0,-255.264	0/1:1100:516,584:516:17665:584:20726:-1533.18,0,-1258.42	0/0:188:188,0:188:6412:0:0:0,-56.5936,-577.195	0/0:70:69,1:69:2421:1:36:0,-17.4738,-214.548	0/1:1387:761,626:761:26003:626:22214:-1580.95,0,-1922.14	0/1:144:80,63:80:2771:63:2252:-159.53,0,-206.224	0/0:68:67,1:67:2292:1:36:0,-16.8718,-202.939	0/1:1126:576,550:576:19786:550:19539:-1418.8,0,-1441.37	0/1:1161:589,571:589:20158:571:20305:-1477.36,0,-1464.31	0/1:93:37,56:37:1237:56:1962:-148.852,0,-83.6257	0/0:89:89,0:89:2986:0:0:0,-26.7917,-268.978	0/1:827:420,407:420:14347:407:14377:-1044.58,0,-1042.09	0/0:223:223,0:223:7620:0:0:0,-67.1297,-685.858	0/0:300:297,3:297:10116:3:108:0,-80.2362,-900.342	0/0:91:91,0:91:3138:0:0:0,-27.3937,-282.648	0/0:138:137,1:137:4730:1:21:0,-39.4422,-423.765	0/0:282:278,4:278:9457:4:144:0,-71.5768,-837.784	0/0:148:146,2:146:5026:2:72:0,-37.7157,-445.665	0/0:188:188,0:188:6295:0:0:0,-56.5936,-566.672	0/0:78:77,1:77:2670:1:36:0,-19.8821,-236.948	0/0:68:68,0:68:2252:0:0:0,-20.47,-202.938	0/1:786:429,356:429:14704:356:12680:-904.186,0,-1086.61	0/0:96:96,0:96:3262:0:0:0,-28.8989,-293.803	0/1:78:42,36:42:1412:36:1273:-91.3839,0,-103.886	0/1:178:93,85:93:3184:85:3044:-220.597,0,-233.202	0/0:222:222,0:222:7521:0:0:0,-66.8287,-676.964	0/0:195:195,0:195:6656:0:0:0,-58.7008,-599.144	0/0:136:136,0:136:4621:0:0:0,-40.9401,-416.064	0/1:1050:490,559:490:16691:559:19850:-1469.66,0,-1185.75	0/0:136:134,2:134:4604:2:72:0,-34.1034,-407.693	0/0:141:141,0:141:4844:0:0:0,-42.4452,-436.127	0/0:255:254,1:254:8603:1:36:0,-73.1644,-770.702	0/0:81:81,0:81:2647:0:0:0,-24.3834,-238.471	0/0:47:47,0:47:1591:0:0:0,-14.1484,-143.476	0/1:68:28,40:28:936:40:1390:-104.925,0,-64.0745	0/0:109:109,0:109:3581:0:0:0,-32.8123,-322.507	0/1:44:19,25:19:668:25:887:-66.9028,0,-47.2003	0/0:64:64,0:64:2123:0:0:0,-19.2659,-191.333	0/0:69:69,0:69:2308:0:0:0,-20.7711,-207.977	0/0:208:208,0:208:6974:0:0:0,-62.6142,-627.76	0/1:639:299,340:299:10020:340:12011:-888.405,0,-709.438	0/1:74:27,47:27:898:47:1645:-126.055,0,-58.8474	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:85:84,1:84:2864:1:36:0,-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chr06	5580587	.	GTCAC	ATCAC,ATCAG	129497	PASS	AB=0.543453,0.449862;ABP=44.7157,58.5353;AC=143,43;AF=0.768817,0.231183;AN=186;AO=4918,1164;CIGAR=1X4M,1X3M1X;DP=6119;DPB=6119;DPRA=11.0743,0.958315;EPP=10682.3,2530.6;EPPR=0;GTI=3;LEN=1,5;MEANALT=1.94565,2.40385;MQM=54.0787,53.9545;MQMR=0;NS=93;NUMALT=2;ODDS=0.518065;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=174673,40207;QR=0;RO=0;RPL=0,0;RPP=10682.3,2530.6;RPPR=0;RPR=4918,1164;RUN=1,1;SAF=0,0;SAP=10682.3,2530.6;SAR=4918,1164;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,23,11:0:0:23,11:820,377:-97.1764,-30.5389,-23.6152,-66.6479,0,-63.3366	1/1:48:0,48,0:0:0:48,0:1699,0:-152.776,-14.4494,0,-152.776,-14.4494,-152.776	1/2:79:0,45,34:0:0:45,34:1595,1208:-227.368,-97.9206,-84.3743,-129.8,0,-119.565	1/1:138:0,138,0:0:0:138,0:4915,0:-441.615,-41.5421,0,-441.615,-41.5421,-441.615	1/2:23:0,20,3:0:0:20,3:708,97:-65.6184,-8.13699,-2.11639,-57.8082,0,-56.9051	1/2:35:0,25,10:0:0:25,10:883,347:-100.15,-28.4864,-20.9606,-72.0115,0,-69.0012	1/1:87:0,87,0:0:0:87,0:3095,0:-278.187,-26.1896,0,-278.187,-26.1896,-278.187	1/2:114:0,73,40:0:0:73,40:2604,1396:-324.426,-113.124,-91.1486,-211.305,0,-199.263	1/2:78:0,52,26:0:0:52,26:1872,913:-226.679,-74.4726,-58.819,-152.559,0,-144.732	1/2:70:0,41,29:0:0:41,29:1455,998:-199.679,-81.3436,-69.0013,-118.684,0,-109.954	1/2:41:0,21,20:0:0:21,20:739,679:-115.435,-55.3591,-49.0375,-60.4213,0,-54.4007	1/1:101:0,101,0:0:0:101,0:3584,0:-321.267,-30.404,0,-321.267,-30.404,-321.267	1/2:60:0,29,31:0:0:29,31:1029,1056:-169.221,-85.815,-77.0851,-83.7524,0,-74.4204	1/2:65:0,30,34:0:0:30,34:1067,1181:-182.445,-95.6409,-86.61,-86.874,0,-76.639	1/1:48:0,47,0:0:0:47,0:1668,0:-150.014,-14.1484,0,-150.014,-14.1484,-150.014	1/2:45:0,25,20:0:0:25,20:882,688:-127.847,-56.1484,-48.6226,-72.0457,0,-66.0251	1/1:29:0,29,0:0:0:29,0:1027,0:-92.377,-8.72987,0,-92.377,-8.72987,-92.377	1/1:33:0,33,0:0:0:33,0:1170,0:-104.986,-9.93399,0,-104.986,-9.93399,-104.986	1/1:29:0,26,0:0:0:26,0:914,0:-81.9944,-7.82678,0,-81.9944,-7.82678,-81.9944	1/1:134:0,134,0:0:0:134,0:4746,0:-426.8,-40.338,0,-426.8,-40.338,-426.8	1/2:133:0,74,59:0:0:74,59:2621,2023:-376.44,-163.519,-141.243,-213.267,0,-195.507	1/1:98:0,97,1:0:0:97,1:3467,31:-311.78,-29.1999,0,-309.31,-26.4222,-309.009	1/2:48:0,22,24:0:0:22,24:792,836:-132.417,-67.89,-61.2673,-64.5842,0,-57.3595	1/2:35:0,14,20:0:0:14,20:500,660:-93.9714,-53.2611,-49.0467,-40.7159,0,-34.6953	1/2:68:0,55,13:0:0:55,13:1939,453:-194.242,-37.0107,-20.4541,-157.579,0,-153.666	1/1:125:0,121,2:0:0:121,2:4309,72:-386.85,-36.4246,0,-380.977,-30.5273,-380.375	1/1:117:0,117,0:0:0:117,0:4113,0:-369.131,-35.2205,0,-369.131,-35.2205,-369.131	1/1:35:0,34,1:0:0:34,1:1201,22:-107.891,-10.235,0,-106.346,-8.48081,-106.045	1/2:134:0,63,70:0:0:63,70:2225,2443:-379.695,-198.619,-179.654,-181.175,0,-160.102	1/2:109:0,56,53:0:0:56,53:1991,1835:-309.591,-148.094,-131.237,-161.845,0,-145.891	1/1:81:0,77,1:0:0:77,1:2733,35:-245.592,-23.1793,0,-242.746,-20.3322,-242.445	1/2:13:0,3,10:0:0:3,10:108,317:-34.6087,-25.8004,-24.8973,-9.15779,0,-6.14749	1/1:15:0,15,0:0:0:15,0:536,0:-48.4336,-4.51545,0,-48.4336,-4.51545,-48.4336	2/2:6:0,0,6:0:0:0,6:0,212:-19.3828,-19.3828,-19.3828,-1.80618,-1.80618,0	1/2:9:0,5,4:0:0:5,4:180,136:-25.8157,-11.3478,-9.8426,-14.8141,0,-13.61	1/1:9:0,9,0:0:0:9,0:320,0:-29.0731,-2.70927,0,-29.0731,-2.70927,-29.0731	1/2:168:0,87,79:0:0:87,79:3074,2755:-473.906,-223.762,-197.572,-250.178,0,-226.396	1/1:78:0,77,0:0:0:77,0:2735,0:-244.724,-23.1793,0,-244.724,-23.1793,-244.724	1/1:39:0,39,0:0:0:39,0:1369,0:-122.965,-11.7402,0,-122.965,-11.7402,-122.965	1/1:2:0,2,0:0:0:2,0:72,0:-6.82703,-0.60206,0,-6.82703,-0.60206,-6.82703	1/1:110:0,110,0:0:0:110,0:3902,0:-350.271,-33.1133,0,-350.271,-33.1133,-350.271	1/1:27:0,27,0:0:0:27,0:959,0:-86.4372,-8.12781,0,-86.4372,-8.12781,-86.4372	1/2:86:0,48,36:0:0:48,36:1705,1246:-239.689,-101.099,-86.6494,-138.697,0,-127.86	1/2:47:0,26,21:0:0:26,21:927,715:-133.408,-57.9903,-50.1635,-75.7639,0,-69.4423	1/2:40:0,21,18:0:0:21,18:720,621:-108.83,-50.4552,-44.1335,-58.4157,0,-52.9972	1/2:101:0,74,27:0:0:74,27:2640,931:-290.948,-75.9427,-53.6665,-215.353,0,-207.225	1/2:55:0,34,21:0:0:34,21:1220,743:-159.57,-60.5339,-50.2989,-99.3896,0,-93.068	1/1:89:0,86,0:0:0:86,0:3025,0:-271.535,-25.8886,0,-271.535,-25.8886,-271.535	1/1:75:0,75,0:0:0:75,0:2660,0:-239.292,-22.5773,0,-239.292,-22.5773,-239.292	1/2:82:0,35,47:0:0:35,47:1251,1627:-234.307,-132.465,-121.929,-102.194,0,-88.0456	1/2:104:0,62,42:0:0:62,42:2198,1436:-295.565,-116.738,-98.0742,-179.174,0,-166.53	1/2:4:0,2,2:0:0:2,2:72,66:-11.5484,-5.66338,-5.06132,-6.22973,0,-5.62767	1/1:67:0,66,1:0:0:66,1:2364,36:-211.314,-19.868,0,-208.385,-16.5798,-208.084	1/1:38:0,37,1:0:0:37,1:1310,36:-117.76,-11.1381,0,-114.878,-7.90302,-114.577	1/2:8:0,3,5:0:0:3,5:108,172:-22.6601,-13.8629,-12.9598,-9.14675,0,-7.6416	1/2:88:0,42,46:0:0:42,46:1500,1587:-250.798,-129.085,-116.442,-122.064,0,-108.216	1/1:36:0,36,0:0:0:36,0:1276,0:-114.856,-10.8371,0,-114.856,-10.8371,-114.856	1/2:3:0,2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chr06	5580624	.	CCT	TCG,TCT	134256	PASS	AB=0.5553,0.440107;ABP=72.4185,84.4251;AC=143,43;AF=0.768817,0.231183;AN=186;AO=5138,1171;CIGAR=1X1M1X,1X2M;DP=6343;DPB=6343;DPRA=11.4801,1.06237;EPP=11160,2545.8;EPPR=11.6962;GTI=3;LEN=3,1;MEANALT=1.8587,2.2037;MQM=53.9033,54.1708;MQMR=60;NS=93;NUMALT=2;ODDS=0.535083;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=181098,41845;QR=136;RO=4;RPL=5138,1171;RPP=11160,2545.8;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=11160,2545.8;SAR=5138,1171;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,26,13:0:0:26,13:903,463:-111.066,-37.9653,-30.1385,-73.4528,0,-69.5394	1/1:51:0,51,0:0:0:51,0:1806,0:-162.372,-15.3525,0,-162.372,-15.3525,-162.372	1/2:82:0,47,35:0:0:47,35:1658,1252:-236.096,-101.763,-87.6142,-134.687,0,-124.151	1/1:145:0,145,0:0:0:145,0:5071,0:-455.686,-43.6494,0,-455.686,-43.6494,-455.686	1/2:24:0,21,3:0:0:21,3:741,93:-67.9111,-7.76396,-1.44233,-60.4619,0,-59.5588	1/2:35:0,25,10:0:0:25,10:889,356:-101.488,-29.2936,-21.7678,-72.5495,0,-69.5392	1/1:90:0,89,0:0:0:89,0:3123,0:-279.975,-26.7917,0,-279.975,-26.7917,-279.975	1/2:116:0,76,40:0:0:76,40:2687,1428:-333.871,-116.113,-93.2352,-218.111,0,-206.07	1/2:83:0,56,27:0:0:56,27:1966,957:-237.569,-78.1114,-61.2537,-159.81,0,-151.682	1/2:71:0,42,29:0:0:42,29:1503,1028:-206.377,-84.0353,-71.392,-122.697,0,-113.967	1/2:42:0,23,19:0:0:23,19:808,684:-121.769,-56.0909,-49.1672,-66.0335,0,-60.3139	1/1:108:0,106,2:0:0:106,2:3732,72:-334.237,-31.9092,0,-328.379,-25.6931,-327.777	1/2:66:0,33,33:0:0:33,33:1157,1173:-189.385,-95.6957,-85.7617,-94.0412,0,-84.1072	1/2:68:0,34,34:0:0:34,34:1190,1213:-195.368,-98.7854,-88.5504,-96.9351,0,-86.7001	1/1:53:0,53,0:0:0:53,0:1886,0:-169.598,-15.9546,0,-169.598,-15.9546,-169.598	1/2:46:0,26,20:0:0:26,20:929,712:-133.913,-58.2992,-50.4725,-75.9698,0,-69.9492	1/1:32:0,32,0:0:0:32,0:1138,0:-102.263,-9.63296,0,-102.263,-9.63296,-102.263	1/1:33:0,33,0:0:0:33,0:1179,0:-105.785,-9.93399,0,-105.785,-9.93399,-105.785	1/1:29:0,29,0:0:0:29,0:1026,0:-92.2607,-8.72987,0,-92.2607,-8.72987,-92.2607	1/1:139:0,138,0:0:0:138,0:4845,0:-435.261,-41.5421,0,-435.261,-41.5421,-435.261	1/2:133:0,74,59:0:0:74,59:2625,2109:-385.113,-171.777,-149.501,-213.691,0,-195.93	1/1:102:0,102,0:0:0:102,0:3590,0:-323.134,-30.7051,0,-323.134,-30.7051,-323.134	1/2:49:0,23,24:0:0:23,24:809,860:-135.778,-70.0422,-63.1185,-65.7437,0,-58.519	1/2:36:0,16,20:0:0:16,20:560,719:-104.122,-58.6531,-53.8366,-45.8214,0,-39.8008	1/2:69:0,55,14:0:0:55,14:1931,504:-197.911,-41.2977,-24.741,-156.97,0,-152.755	1/1:130:0,128,2:0:0:128,2:4532,72:-406.663,-38.5318,0,-400.789,-32.2991,-400.187	1/1:120:0,118,1:0:0:118,1:4154,36:-372.19,-35.5215,0,-369.252,-32.5839,-368.951	1/1:35:0,35,0:0:0:35,0:1228,0:-110.163,-10.5361,0,-110.163,-10.5361,-110.163	1/2:137:0,65,71:0:0:65,71:2312,2544:-395.534,-207.247,-187.68,-188.283,0,-166.91	1/2:110:1,59,49:1:36:59,49:2039,1726:-300.894,-137.261,-122.438,-161.025,0,-149.212	1/1:89:0,88,1:0:0:88,1:3121,36:-280.083,-26.4906,0,-277.148,-23.196,-276.847	1/2:13:0,3,10:0:0:3,10:108,360:-38.4789,-29.6804,-28.7773,-9.15779,0,-6.14749	1/1:16:0,16,0:0:0:16,0:557,0:-50.3716,-4.81648,0,-50.3716,-4.81648,-50.3716	2/2:6:0,0,6:0:0:0,6:0,216:-19.7444,-19.7444,-19.7444,-1.80618,-1.80618,0	1/2:10:0,5,5:0:0:5,5:180,180:-29.4708,-15.0136,-13.5085,-14.8141,0,-13.309	1/1:10:0,10,0:0:0:10,0:344,0:-31.2224,-3.0103,0,-31.2224,-3.0103,-31.2224	1/2:169:0,90,78:0:0:90,78:3184,2800:-487.25,-228.217,-201.125,-259.063,0,-235.583	1/1:83:0,81,0:0:0:81,0:2870,0:-257.166,-24.3834,0,-257.166,-24.3834,-257.166	1/1:40:0,40,0:0:0:40,0:1400,0:-125.792,-12.0412,0,-125.792,-12.0412,-125.792	1/1:2:0,2,0:0:0:2,0:69,0:-6.54525,-0.60206,0,-6.54525,-0.60206,-6.54525	1/1:113:0,113,0:0:0:113,0:4012,0:-360.048,-34.0164,0,-360.048,-34.0164,-360.048	1/1:32:0,32,0:0:0:32,0:1121,0:-101.015,-9.63296,0,-101.015,-9.63296,-101.015	1/2:85:0,48,36:0:0:48,36:1714,1292:-244.472,-105.093,-90.6437,-139.376,0,-128.539	1/2:50:0,29,21:0:0:29,21:1024,750:-144.394,-61.1196,-52.3898,-83.6279,0,-77.3062	1/2:41:0,21,20:0:0:21,20:749,720:-120.014,-59.059,-52.7374,-61.3125,0,-55.2919	1/2:102:0,73,28:0:0:73,28:2561,1000:-289.759,-81.4938,-59.5186,-208.26,0,-199.831	1/2:58:0,37,21:0:0:37,21:1286,756:-165.784,-61.6913,-50.5532,-104.447,0,-98.125	1/1:96:0,94,0:0:0:94,0:3275,0:-293.894,-28.2968,0,-293.894,-28.2968,-293.894	1/1:77:0,76,0:0:0:76,0:2677,0:-240.47,-22.8783,0,-240.47,-22.8783,-240.47	1/2:81:0,35,46:0:0:35,46:1258,1656:-237.82,-135.357,-124.821,-102.822,0,-88.9747	1/2:109:0,65,44:0:0:65,44:2293,1542:-312.086,-125.645,-106.078,-186.792,0,-173.546	1/2:4:0,2,2:0:0:2,2:72,72:-12.0999,-6.22973,-5.62767,-6.22973,0,-5.62767	1/1:70:0,69,1:0:0:69,1:2405,36:-215.027,-20.7711,0,-212.098,-17.4829,-211.797	1/1:40:0,40,0:0:0:40,0:1434,0:-129.156,-12.0412,0,-129.156,-12.0412,-129.156	1/2:8:0,3,5:0:0:3,5:108,180:-23.2412,-14.4488,-13.5457,-9.14675,0,-7.6416	1/2:92:0,45,47:0:0:45,47:1582,1688:-265.968,-137.74,-124.194,-128.582,0,-114.433	1/1:38:0,38,0:0:0:38,0:1341,0:-120.443,-11.4391,0,-120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chr06	5614366	.	TAAA	AAAA,AAAC	267549	PASS	AB=0.470162,0.527421;ABP=44.6074,38.1418;AC=139,47;AF=0.747312,0.252688;AN=186;AO=10077,2870;CIGAR=1X3M,1X2M1X;DP=12969;DPB=12969;DPRA=33.2205,1.12184;EPP=21798.2,6226.45;EPPR=16.0391;GTI=3;LEN=1,4;MEANALT=1.74444,2.14545;MQM=59.7555,53.9321;MQMR=60;NS=93;NUMALT=2;ODDS=1.67474;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=343959,102199;QR=208;RO=6;RPL=10,1;RPP=21798.2,6226.45;RPPR=16.0391;RPR=10067,2869;RUN=1,1;SAF=10077,2870;SAP=21884.9,6235.14;SAR=0,0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:70:0,29,41:0:0:29,41:985,1449:-197.668,-117.794,-109.064,-80.2182,0,-67.876	1/1:211:0,211,0:0:0:211,0:7293,0:-656.401,-63.5173,0,-656.401,-63.5173,-656.401	1/2:217:0,117,100:0:0:117,100:3955,3565:-610.7,-290.138,-254.918,-320.909,0,-290.806	1/1:380:0,379,1:0:0:379,1:12729,35:-1145.15,-114.09,0,-1142.31,-110.895,-1142	1/2:229:0,128,100:0:0:128,100:4388,3574:-647.25,-291.04,-252.509,-356.309,0,-326.206	1/2:187:1,84,101:1:36:84,101:2903,3587:-522.093,-286.762,-264.413,-232.684,0,-205.217	1/1:172:0,172,0:0:0:172,0:5851,0:-526.711,-51.7772,0,-526.711,-51.7772,-526.711	1/2:340:0,159,181:0:0:159,181:5463,6453:-965.662,-522.11,-474.246,-443.901,0,-389.414	1/2:69:1,47,21:1:36:47,21:1645,753:-191.395,-57.8616,-46.6509,-130.89,0,-127.506	1/2:199:0,109,90:0:0:109,90:3690,3200:-559.886,-260.773,-227.961,-299.46,0,-272.367	1/2:62:0,30,32:0:0:30,32:1049,1151:-179.503,-94.1703,-85.1394,-85.6873,0,-76.0543	1/1:70:0,70,0:0:0:70,0:2425,0:-218.508,-21.0721,0,-218.508,-21.0721,-218.508	1/2:67:0,44,23:0:0:44,23:1547,816:-191.473,-65.606,-52.3607,-126.217,0,-119.293	1/2:68:0,33,35:0:0:33,35:1172,1257:-198.228,-102.731,-92.7973,-95.8535,0,-85.3175	1/1:45:0,45,0:0:0:45,0:1572,0:-141.768,-13.5464,0,-141.768,-13.5464,-141.768	1/2:52:0,25,26:0:0:25,26:892,916:-146.979,-74.267,-66.7412,-72.7665,0,-64.9397	1/1:48:0,48,0:0:0:48,0:1681,0:-151.562,-14.4494,0,-151.562,-14.4494,-151.562	1/1:44:0,44,0:0:0:44,0:1528,0:-137.811,-13.2453,0,-137.811,-13.2453,-137.811	1/1:47:0,47,0:0:0:47,0:1657,0:-149.386,-14.1484,0,-149.386,-14.1484,-149.386	1/1:426:0,424,2:0:0:424,2:14364,71:-1292.15,-127.637,0,-1286.37,-121.501,-1285.77	1/2:214:0,101,113:0:0:101,113:3443,4031:-607.325,-328.207,-297.803,-279.466,0,-245.449	1/1:146:0,144,2:0:0:144,2:4892,68:-439.981,-43.3483,0,-434.466,-37.494,-433.864	1/2:183:0,97,85:0:0:97,85:3379,3045:-522.349,-247.587,-218.387,-274.756,0,-249.168	1/2:241:0,92,149:0:0:92,149:3099,5285:-680.773,-429.668,-401.973,-251.448,0,-206.595	1/2:57:0,26,31:0:0:26,31:878,1103:-161.136,-89.9879,-82.1611,-71.4938,0,-62.1619	1/1:423:1,421,1:1:36:421,1:14591,36:-1308.82,-123.796,0,-1306.18,-123.797,-1308.82	1/1:219:0,219,0:0:0:219,0:7498,0:-674.856,-65.9256,0,-674.856,-65.9256,-674.856	1/1:24:0,24,0:0:0:24,0:848,0:-76.6326,-7.22472,0,-76.6326,-7.22472,-76.6326	1/2:255:0,81,172:0:0:81,172:2761,6152:-725.31,-501.307,-476.923,-224.033,0,-172.256	1/2:203:0,79,124:0:0:79,124:2700,4396:-575.964,-356.88,-333.099,-219.43,0,-182.102	1/1:195:0,192,3:0:0:192,3:6514,102:-585.909,-57.7978,0,-577.641,-49.1899,-576.738	1/2:9:0,5,4:0:0:5,4:172,138:-25.5009,-11.5321,-10.027,-14.3128,0,-13.1087	1/1:47:0,47,0:0:0:47,0:1584,0:-142.841,-14.1484,0,-142.841,-14.1484,-142.841	2/2:7:0,0,7:0:0:0,7:0,239:-21.7918,-21.7918,-21.7918,-2.10721,-2.10721,0	1/2:12:0,7,5:0:0:7,5:244,180:-34.8374,-14.9996,-12.8924,-20.1922,0,-18.6871	1/1:12:0,12,0:0:0:12,0:397,0:-36.0483,-3.61236,0,-36.0483,-3.61236,-36.0483	1/2:184:0,92,91:0:0:92,91:3249,3254:-529.306,-264.725,-237.03,-264.582,0,-237.189	1/1:307:0,307,0:0:0:307,0:10525,0:-947.123,-92.4162,0,-947.123,-92.4162,-947.123	1/1:49:0,47,0:0:0:47,0:1660,0:-149.288,-14.1484,0,-149.288,-14.1484,-149.288	1/2:4:0,3,1:0:0:3,1:100,36:-11.3667,-3.29214,-2.38905,-8.42735,0,-8.12632	1/1:249:1,248,0:1:30:248,0:8422,0:-754.977,-71.9569,0,-755.278,-74.6554,-757.676	1/1:30:0,30,0:0:0:30,0:1056,0:-95.3509,-9.0309,0,-95.3509,-9.0309,-95.3509	1/2:272:0,147,124:0:0:147,124:5032,4423:-767.733,-359.395,-315.143,-408.343,0,-371.015	1/2:98:0,32,66:0:0:32,66:1120,2330:-280.853,-189.739,-180.106,-91.464,0,-71.5961	1/2:63:0,37,26:0:0:37,26:1293,905:-178.964,-73.7833,-62.6452,-105.529,0,-97.7017	1/2:216:0,86,130:0:0:86,130:2957,4606:-615.38,-375.249,-349.36,-240.479,0,-201.345	1/2:292:0,158,133:0:0:158,133:5331,4725:-815.136,-383.102,-335.539,-432.041,0,-392.004	1/1:304:0,301,3:0:0:301,3:10299,98:-926.545,-90.61,0,-918.735,-82.4771,-917.831	1/1:158:0,158,0:0:0:158,0:5381,0:-484.444,-47.5627,0,-484.444,-47.5627,-484.444	1/2:291:0,126,165:0:0:126,165:4246,5877:-822.663,-478.642,-440.712,-344.366,0,-294.696	1/2:196:0,104,92:0:0:104,92:3450,3293:-547.693,-268.648,-237.341,-279.39,0,-251.695	1/2:12:0,5,7:0:0:5,7:172,252:-34.8561,-20.8936,-19.3884,-14.3128,0,-12.2056	1/1:211:0,210,0:0:0:210,0:7027,0:-632.101,-63.2163,0,-632.101,-63.2163,-632.101	1/1:28:0,28,0:0:0:28,0:972,0:-87.7919,-8.42884,0,-87.7919,-8.42884,-87.7919	1/2:18:0,8,10:0:0:8,10:284,355:-52.3452,-29.2045,-26.7963,-23.4951,0,-20.4848	1/2:179:0,92,87:0:0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chr06	5616790	.	AGTTC	CGTTT,AGTTT	156773	PASS	AB=0.516827,0.475275;ABP=10.172,18.4731;AC=144,44;AF=0.765957,0.234043;AN=188;AO=5950,1409;CIGAR=1X3M1X,4M1X;DP=7406;DPB=7406.4;DPRA=39.8065,1.07643;EPP=12862.5,3027.97;EPPR=9.52472;GTI=2;LEN=5,1;MEANALT=2.03226,2.47368;MQM=59.7797,59.9631;MQMR=60;NS=94;NUMALT=2;ODDS=0.0753246;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=18,18;PQR=0;PRO=0;QA=208022,50448;QR=107;RO=3;RPL=7,4;RPP=12862.5,3027.97;RPPR=9.52472;RPR=5943,1405;RUN=1,1;SAF=5950,1409;SAP=12923.3,3062.61;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:9:0,2,6:0:0:2,6:72,216:-23.4993,-17.6245,-17.0224,-5.87483,0,-4.06865	1/1:86:0,86,0:0:0:86,0:2998,0:-270.048,-25.8886,0,-270.048,-25.8886,-270.048	1/2:75:0,51,24:0:0:51,24:1780,864:-215.628,-70.8578,-55.5053,-145.126,0,-137.902	1/1:195:0,193,1:0:0:193,1:6756,32:-605.791,-58.0988,0,-603.213,-55.4695,-602.912	1/2:31:0,19,12:0:0:19,12:668,432:-89.9785,-35.6088,-29.8893,-54.7262,0,-51.1139	1/2:47:0,34,13:0:0:34,13:1153,468:-132.018,-38.5463,-28.3112,-93.8262,0,-89.9128	1/1:121:0,120,0:0:0:120,0:4163,0:-374.546,-36.1236,0,-374.546,-36.1236,-374.546	1/2:140:0,73,65:0:0:73,65:2547,2325:-396.272,-189.615,-167.64,-206.683,0,-187.116	1/2:54:0,32,22:0:0:32,22:1124,784:-155.742,-64.2613,-54.6283,-91.8349,0,-85.2122	1/2:75:0,40,35:0:0:40,35:1381,1256:-214.999,-102.809,-90.768,-112.542,0,-102.006	1/2:60:1,34,24:1:36:34,24:1172,864:-162.478,-67.5835,-60.286,-92.2739,0,-87.9871	1/1:61:0,61,0:0:0:61,0:2167,0:-195.297,-18.3628,0,-195.297,-18.3628,-195.297	1/2:65:0,36,28:0:0:36,28:1262,1008:-184.985,-82.2961,-71.459,-102.733,0,-94.304	1/2:104:0,52,49:0:0:52,49:1811,1760:-290.92,-143.655,-128.002,-147.338,0,-132.588	1/1:51:0,51,0:0:0:51,0:1784,0:-160.842,-15.3525,0,-160.842,-15.3525,-160.842	1/2:40:1,17,21:1:36:17,21:601,752:-107.055,-58.4101,-56.2302,-46.026,0,-42.6423	1/1:78:0,77,0:0:0:77,0:2666,0:-239.828,-23.1793,0,-239.828,-23.1793,-239.828	1/1:65:0,65,0:0:0:65,0:2254,0:-203.11,-19.567,0,-203.11,-19.567,-203.11	1/1:46:0,44,1:0:0:44,1:1547,36:-139.162,-13.2453,0,-136.225,-10.3079,-135.924	1/1:159:0,157,2:0:0:157,2:5488,72:-493.674,-47.2617,0,-487.799,-41.027,-487.197	1/2:110:0,61,48:0:0:61,48:2111,1702:-309.819,-138.655,-120.292,-171.154,0,-156.705	1/1:57:0,57,0:0:0:57,0:1999,0:-180.136,-17.1587,0,-180.136,-17.1587,-180.136	1/2:49:0,27,22:0:0:27,22:938,792:-141.234,-64.983,-56.8552,-76.6056,0,-69.9829	1/2:61:0,36,25:0:0:36,25:1249,900:-175.314,-73.7953,-62.9582,-101.873,0,-94.3474	1/2:42:0,26,16:0:0:26,16:907,576:-121.121,-47.3585,-39.5317,-74.1177,0,-69.3012	1/1:218:0,214,1:0:0:214,1:7506,36:-675.179,-64.4204,0,-672.241,-61.483,-671.94	1/1:114:0,114,0:0:0:114,0:4007,0:-360.792,-34.3174,0,-360.792,-34.3174,-360.792	1/1:35:0,35,0:0:0:35,0:1228,0:-110.808,-10.5361,0,-110.808,-10.5361,-110.808	1/2:181:0,82,99:0:0:82,99:2856,3522:-519.632,-287.386,-262.702,-232.597,0,-202.795	1/2:104:0,61,41:0:0:61,41:2124,1472:-292.801,-120.119,-101.756,-172.722,0,-160.379	1/1:120:0,115,4:0:0:115,4:3994,144:-359.211,-34.6185,0,-347.46,-22.8688,-346.256	1/2:24:0,9,15:0:0:9,15:320,540:-70.4973,-44.4211,-41.7118,-26.4332,0,-21.9178	1/1:15:0,15,0:0:0:15,0:539,0:-48.8462,-4.51545,0,-48.8462,-4.51545,-48.8462	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	1/1:1:0,1,0:0:0:1,0:33,0:-3.29913,-0.30103,0,-3.29913,-0.30103,-3.29913	1/1:17:0,17,0:0:0:17,0:583,0:-52.764,-5.11751,0,-52.764,-5.11751,-52.764	1/2:195:0,112,82:0:0:112,82:3910,2939:-557.844,-239.823,-206.108,-318.153,0,-293.468	1/1:93:0,93,0:0:0:93,0:3266,0:-294.16,-27.9958,0,-294.16,-27.9958,-294.16	1/1:79:0,79,0:0:0:79,0:2754,0:-248.104,-23.7814,0,-248.104,-23.7814,-248.104	2/2:2:0,0,2:0:0:0,2:0,68:-6.45771,-6.45771,-6.45771,-0.60206,-0.60206,0	1/1:164:0,164,0:0:0:164,0:5746,0:-517.266,-49.3689,0,-517.266,-49.3689,-517.266	1/1:37:0,37,0:0:0:37,0:1289,0:-116.311,-11.1381,0,-116.311,-11.1381,-116.311	1/2:63:0,26,37:0:0:26,37:908,1315:-181.369,-107.513,-99.6861,-74.2081,0,-63.07	1/2:50:0,31,19:0:0:31,19:1096,680:-145.071,-55.8096,-46.4777,-89.6178,0,-83.8982	1/2:65:0,28,37:0:0:28,37:949,1328:-185.508,-108.684,-100.255,-77.1708,0,-66.0327	1/2:37:0,17,18:0:0:17,18:589,648:-100.738,-52.8735,-47.756,-47.8583,0,-42.4398	1/2:98:0,44,53:0:0:44,53:1528,1896:-278.77,-154.604,-141.358,-124.158,0,-108.204	1/1:134:0,129,4:0:0:129,4:4540,144:-408.414,-38.8329,0,-396.664,-27.0832,-395.46	1/1:71:0,70,0:0:0:70,0:2503,0:-225.163,-21.0721,0,-225.163,-21.0721,-225.163	1/2:85:0,47,38:0:0:47,38:1659,1368:-247.071,-111.982,-97.8333,-135.446,0,-124.007	1/2:119:0,45,73:0:0:45,73:1580,2612:-341.631,-213.042,-199.495,-128.632,0,-106.657	1/2:11:0,5,6:0:0:5,6:163,216:-31.1283,-17.9843,-16.4792,-13.4852,0,-11.679	1/1:96:0,93,1:0:0:93,1:3283,36:-295.362,-27.9958,0,-292.425,-25.0334,-292.124	1/1:44:0,43,0:0:0:43,0:1509,0:-135.88,-12.9443,0,-135.88,-12.9443,-135.88	1/2:19:0,9,10:0:0:9,10:319,360:-55.7192,-29.734,-27.0247,-26.3421,0,-23.3318	1/2:81:0,42,38:0:0:42,38:1478,1347:-230.035,-109.72,-97.077,-120.356,0,-108.917	1/1:47:0,46,0:0:0:46,0:1619,0:-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chr06	5616856	.	T	A	100923	PASS	AB=0.532772;ABP=24.0749;AC=147;AF=0.781915;AN=188;AO=4647;CIGAR=1X;DP=5710;DPB=5710;DPRA=0;EPP=9955.35;EPPR=2278.79;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9983;MQMR=60;NS=94;NUMALT=1;ODDS=0.474789;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165966;QR=38015;RO=1060;RPL=14;RPP=9972.61;RPPR=2278.79;RPR=4633;RUN=1;SAF=2;SAP=10076.5;SAR=4645;SRF=0;SRP=2304.77;SRR=1060;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:3,5:3:104:5:169:-13.1333,0,-7.29457	1/1:62:0,62:0:0:62:2207:-198.894,-18.6639,0	0/1:125:49,76:49:1756:76:2728:-208.134,0,-120.695	1/1:110:0,110:0:0:110:3928:-353.714,-33.1133,0	0/1:25:10,15:10:360:15:532:-40.6873,0,-25.2186	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	1/1:69:0,68:0:0:68:2416:-217.337,-20.47,0	0/1:101:39,62:39:1400:62:2220:-169.66,0,-95.8952	0/1:41:22,19:22:788:19:680:-49.1869,0,-58.9026	0/1:57:32,25:32:1152:25:896:-63.8016,0,-86.8314	0/1:107:60,47:60:2156:47:1692:-120.357,0,-162.097	1/1:78:0,78:0:0:78:2770:-249.54,-23.4803,0	0/1:57:22,35:22:788:35:1248:-95.4662,0,-54.0861	0/1:71:32,39:32:1144:39:1368:-102.043,0,-81.8964	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:38:19,19:19:680:19:684:-50.4512,0,-50.09	1/1:75:0,75:0:0:75:2662:-239.826,-22.5773,0	1/1:36:0,36:0:0:36:1274:-114.961,-10.8371,0	1/1:51:0,51:0:0:51:1787:-161.109,-15.3525,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:34:21,13:21:752:13:464:-31.8625,0,-57.7712	1/1:39:0,39:0:0:39:1377:-124.227,-11.7402,0	0/1:41:29,12:29:1010:12:428:-26.5166,0,-78.8648	0/1:52:19,33:19:684:33:1184:-91.2148,0,-46.2368	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6511	1/1:169:1,168:1:36:168:6032:-539.384,-47.2758,0	1/1:131:0,131:0:0:131:4671:-420.55,-39.4349,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:175:72,103:72:2584:103:3684:-279.083,0,-180.129	0/1:74:29,45:29:1040:45:1612:-123.094,0,-71.6381	1/1:59:0,59:0:0:59:2089:-188.278,-17.7608,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:155:84,71:84:3020:71:2537:-181.92,0,-225.37	1/1:82:0,82:0:0:82:2925:-263.484,-24.6845,0	1/1:68:0,68:0:0:68:2410:-217.156,-20.47,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:48:0,48:0:0:48:1716:-154.725,-14.4494,0	1/1:41:0,41:0:0:41:1467:-132.325,-12.3422,0	0/1:40:16,24:16:576:24:864:-66.0414,0,-40.1338	0/1:57:20,37:20:716:37:1332:-103.024,0,-47.609	0/1:63:30,33:30:1061:33:1184:-87.9034,0,-76.8345	0/1:31:9,22:9:324:22:792:-62.2737,0,-20.1739	0/1:86:31,53:31:1116:53:1904:-145.991,0,-75.1054	1/1:150:0,150:0:0:150:5368:-483.252,-45.1545,0	1/1:41:0,41:0:0:41:1453:-131.064,-12.3422,0	0/1:76:28,48:28:1004:48:1715:-131.757,0,-67.7976	0/1:65:24,41:24:860:41:1472:-113.209,0,-58.1549	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:86:0,86:0:0:86:3055:-275.18,-25.8886,0	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0	0/1:91:33,58:33:1188:58:2060:-158.276,0,-79.8349	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:33:21,12:21:752:12:428:-28.9248,0,-58.0723	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	1/1:88:0,88:0:0:88:3147:-283.455,-26.4906,0	1/1:28:0,28:0:0:28:996:-89.9543,-8.42884,0	1/1:55:0,55:0:0:55:1967:-177.304,-16.5567,0	1/1:83:0,83:0:0:83:2984:-268.791,-24.9855,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:65:0,65:0:0:65:2300:-207.259,-19.567,0	1/1:52:0,52:0:0:52:1855:-167.23,-15.6536,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:98:0,98:0:0:98:3487:-314.042,-29.5009,0	0/1:39:26,13:26:936:13:467:-30.629,0,-72.8193	0/1:91:43,48:43:1548:48:1711:-126.881,0,-112.219	1/1:95:0,95:0:0:95:3399:-306.124,-28.5979,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	1/1:75:3,72:3:108:72:2592:-223.453,-12.5021,0	1/1:113:1,112:1:36:112:3986:-355.333,-30.4181,0	1/1:82:0,82:0:0:82:2939:-264.743,-24.6845,0	1/1:67:0,67:0:0:67:2384:-214.816,-20.169,0	0/1:58:27,31:27:968:31:1116:-83.292,0,-69.9776	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	1/1:86:0,86:0:0:86:3049:-274.64,-25.8886,0	1/1:88:0,88:0:0:88:3107:-279.857,-26.4906,0	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:155:89,66:89:3204:66:2363:-166.268,0,-241.922	0/1:58:38,20:38:1364:20:703:-46.1338,0,-105.601	1/1:28:0,28:0:0:28:989:-89.322,-8.42884,0	1/1:95:0,95:0:0:95:3394:-305.674,-28.5979,0
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chr06	5617861	.	G	A	105107	PASS	AB=0.561745;ABP=66.0264;AC=141;AF=0.766304;AN=184;AO=4843;CIGAR=1X;DP=5685;DPB=5685;DPRA=62.4615;EPP=10519.5;EPPR=1827.05;GTI=4;LEN=1;MEANALT=1.02198;MQM=59.9822;MQMR=59.9631;NS=92;NUMALT=1;ODDS=1.48917;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172709;QR=29992;RO=840;RPL=4843;RPP=10519.5;RPPR=1827.05;RPR=0;RUN=1;SAF=4843;SAP=10519.5;SAR=0;SRF=840;SRP=1827.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:12,31:12:424:31:1112:-87.4438,0,-25.5521	1/1:73:0,73:0:0:73:2563:-230.917,-21.9752,0	0/1:126:48,78:48:1715:78:2792:-213.59,0,-116.705	1/1:125:0,125:0:0:125:4458:-401.387,-37.6288,0	0/1:34:14,20:14:485:20:716:-54.5327,0,-33.742	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	1/1:87:0,87:0:0:87:3103:-279.497,-26.1896,0	0/1:74:29,45:29:1036:45:1592:-121.291,0,-71.2777	0/1:48:21,27:21:744:27:960:-72.2668,0,-52.8349	0/1:57:29,28:29:1032:28:999:-73.0658,0,-76.0348	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:21:4,17:4:140:17:608:-48.7304,0,-6.62295	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:134:0,134:0:0:134:4747:-427.388,-40.338,0	0/1:75:29,46:29:1023:46:1637:-125.039,0,-69.8045	1/1:72:0,72:0:0:72:2583:-232.718,-21.6742,0	0/1:97:49,48:49:1760:48:1705:-124.533,0,-129.482	0/1:52:23,29:23:820:29:1021:-76.5467,0,-58.0397	0/1:42:21,21:21:752:21:756:-55.724,0,-55.363	1/1:175:1,174:1:36:174:6172:-551.977,-49.082,0	1/1:178:0,178:0:0:178:6360:-572.489,-53.5833,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:157:52,105:52:1855:105:3764:-291.697,0,-119.967	0/1:103:42,61:42:1508:61:2177:-165.188,0,-105.009	1/1:288:1,287:1:36:287:10217:-915.859,-83.0984,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:55:33,22:33:1184:22:788:-54.6881,0,-90.3117	1/1:102:1,101:1:36:101:3586:-319.349,-27.1068,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	.:.:.:.:.:.:.:.	1/1:100:0,100:0:0:100:3539:-318.717,-30.103,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:63:19,44:19:676:44:1572:-122.807,0,-42.2031	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/1:77:39,38:39:1385:38:1368:-100.242,0,-101.768	0/1:64:24,40:24:864:40:1436:-110.272,0,-58.8166	1/1:134:0,134:0:0:134:4772:-429.638,-40.338,0	1/1:78:0,78:0:0:78:2783:-250.71,-23.4803,0	0/1:57:31,26:31:1116:26:936:-67.4008,0,-83.593	0/1:116:49,67:49:1756:67:2396:-180.978,0,-123.405	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:106:0,105:0:0:105:3753:-337.609,-31.6082,0	1/1:54:0,54:0:0:54:1928:-173.796,-16.2556,0	0/1:8:4,4:4:144:4:129:-9.51942,0,-10.9054	0/1:58:23,35:23:815:35:1245:-94.8938,0,-56.211	1/1:57:1,56:1:36:56:1983:-175.143,-13.5604,0	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	0/1:22:12,10:12:428:10:360:-26.1216,0,-32.2361	0/1:43:16,27:16:576:27:943:-72.2381,0,-39.2307	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	.:.:.:.:.:.:.:.	1/1:193:0,193:0:0:193:6940:-624.659,-58.0988,0	1/1:140:0,140:0:0:140:4985:-448.797,-42.1442,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:48:0,48:0:0:48:1720:-155.085,-14.4494,0	1/1:123:0,123:0:0:123:4378:-394.192,-37.0267,0	1/1:113:0,113:0:0:113:4034:-363.249,-34.0164,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	1/1:148:0,148:0:0:148:5269:-474.344,-44.5524,0	0/1:44:16,28:16:572:28:992:-76.3479,0,-38.5681	0/1:128:64,64:64:2296:64:2285:-167.378,0,-168.369	1/1:196:0,196:0:0:196:7014:-631.283,-59.0019,0	1/1:47:0,47:0:0:47:1658:-149.504,-14.1484,0	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6511	1/1:83:0,83:0:0:83:2957:-266.362,-24.9855,0	1/1:59:0,59:0:0:59:2096:-188.894,-17.7608,0	1/1:171:0,171:0:0:171:6108:-549.822,-51.4761,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	0/1:11:6,5:6:207:5:180:-12.9654,0,-15.6556	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:10:4,6:4:144:6:208:-16.0488,0,-10.3033	1/1:25:0,25:0:0:25:898:-81.1408,-7.52575,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	0/1:29:15,14:15:531:14:495:-36.1532,0,-39.392	0/1:28:21,7:21:744:7:252:-14.6001,0,-58.8555	1/1:167:1,165:1:36:165:5877:-525.442,-46.7325,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0
chr06	5619426	.	CCA	TCG,ACA	196778	PASS	AB=0.492599,0.503564;ABP=4.74605,3.41269;AC=144,42;AF=0.774194,0.225806;AN=186;AO=7290,1844;CIGAR=1X1M1X,1X2M;DP=9168;DPB=9168.67;DPRA=0,0.922492;EPP=15833,4007.21;EPPR=0;GTI=2;LEN=3,1;MEANALT=1.82796,2.34783;MQM=59.8509,59.9778;MQMR=0;NS=93;NUMALT=2;ODDS=0.523991;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=68,0;PQR=0;PRO=0;QA=257403,65904;QR=0;RO=0;RPL=0,0;RPP=15833,4007.21;RPPR=0;RPR=7290,1844;RUN=1,1;SAF=7290,1844;SAP=15833,4007.21;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,28,15:0:0:28,15:995,540:-125.497,-44.4211,-35.9922,-81.4345,0,-76.919	1/1:141:0,141,0:0:0:141,0:5023,0:-452.217,-42.4452,0,-452.217,-42.4452,-452.217	1/2:81:0,40,41:0:0:40,41:1398,1476:-234.512,-120.794,-108.753,-114.073,0,-101.73	1/1:204:0,203,0:0:0:203,0:7164,0:-644.52,-61.1091,0,-644.52,-61.1091,-644.52	1/2:80:0,51,29:0:0:51,29:1824,1040:-233.915,-85.1845,-69.832,-149.088,0,-140.358	1/2:80:0,46,34:0:0:46,34:1625,1220:-232.205,-99.8718,-86.0244,-132.69,0,-122.455	1/1:160:0,159,0:0:0:159,0:5615,0:-505.178,-47.8638,0,-505.178,-47.8638,-505.178	1/2:78:0,41,36:0:0:41,36:1440,1280:-221.502,-104.305,-91.9623,-117.192,0,-106.355	1/2:115:0,58,57:0:0:58,57:2063,2033:-334.206,-166.082,-148.622,-168.48,0,-151.321	1/2:125:0,60,65:0:0:60,65:2125,2321:-362.679,-189.581,-171.52,-173.453,0,-153.886	1/2:55:0,25,29:0:0:25,29:891,1044:-157.809,-85.1851,-77.6594,-72.6218,0,-63.892	1/1:86:0,85,0:0:0:85,0:3016,0:-271.388,-25.5876,0,-271.388,-25.5876,-271.388	1/2:108:0,45,63:0:0:45,63:1606,2260:-315.621,-184.698,-171.151,-131.281,0,-112.316	1/2:68:0,25,43:0:0:25,43:896,1544:-199.385,-126.309,-118.783,-73.4348,0,-60.4905	1/1:69:0,69,0:0:0:69,0:2438,0:-219.674,-20.7711,0,-219.674,-20.7711,-219.674	1/2:74:0,30,44:0:0:30,44:1047,1554:-212.057,-126.902,-117.871,-85.5051,0,-72.2598	1/1:80:0,80,0:0:0:80,0:2837,0:-255.566,-24.0824,0,-255.566,-24.0824,-255.566	1/1:59:0,59,0:0:0:59,0:2100,0:-189.258,-17.7608,0,-189.258,-17.7608,-189.258	1/1:43:0,42,0:0:0:42,0:1483,0:-133.402,-12.6433,0,-133.402,-12.6433,-133.402	1/1:150:0,149,1:0:0:149,1:5222,36:-469.725,-44.8535,0,-466.788,-41.5562,-466.487	1/2:181:0,86,93:0:0:86,93:3025,3333:-518.093,-271.854,-245.966,-246.258,0,-218.262	1/1:103:0,102,0:0:0:102,0:3570,0:-321.145,-30.7051,0,-321.145,-30.7051,-321.145	1/2:99:0,45,54:0:0:45,54:1595,1929:-287.567,-157.629,-144.083,-130.294,0,-114.038	1/2:117:0,72,44:0:0:72,44:2534,1569:-333.984,-127.895,-106.22,-206.084,0,-192.839	1/2:79:0,28,50:0:0:28,50:1002,1785:-227.308,-145.598,-137.169,-81.7844,0,-66.7329	1/1:301:0,299,2:0:0:299,2:10545,72:-948.599,-90.008,0,-942.724,-83.7733,-942.122	1/1:130:0,130,0:0:0:130,0:4542,0:-408.947,-39.1339,0,-408.947,-39.1339,-408.947	1/1:44:0,44,0:0:0:44,0:1571,0:-141.682,-13.2453,0,-141.682,-13.2453,-141.682	1/2:189:0,89,100:0:0:89,100:3163,3600:-551.739,-294.101,-267.309,-257.995,0,-227.892	1/2:142:0,79,63:0:0:79,63:2786,2260:-411.541,-184.698,-160.916,-227.199,0,-208.234	1/1:108:0,108,0:0:0:108,0:3834,0:-345.254,-32.5112,0,-345.254,-32.5112,-345.254	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:7:0,7,0:0:0:7,0:250,0:-22.8467,-2.10721,0,-22.8467,-2.10721,-22.8467	1/2:10:0,6,4:0:0:6,4:201,144:-28.3713,-12.1095,-10.3033,-16.6116,0,-15.4075	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:251:0,124,127:0:0:124,127:4394,4564:-730.633,-372.685,-335.357,-358.305,0,-320.074	1/1:145:0,144,0:0:0:144,0:5069,0:-456.035,-43.3483,0,-456.035,-43.3483,-456.035	1/1:87:0,87,0:0:0:87,0:3055,0:-275.171,-26.1896,0,-275.171,-26.1896,-275.171	.:.:.:.:.:.:.:.	1/1:137:0,137,0:0:0:137,0:4871,0:-438.532,-41.2411,0,-438.532,-41.2411,-438.532	1/1:37:0,37,0:0:0:37,0:1323,0:-119.367,-11.1381,0,-119.367,-11.1381,-119.367	1/2:139:0,86,52:0:0:86,52:3016,1845:-395.669,-150.313,-124.425,-245.349,0,-229.695	1/2:81:0,35,46:0:0:35,46:1252,1636:-235.772,-133.679,-123.143,-102.449,0,-88.6021	1/2:76:0,32,44:0:0:32,44:1130,1569:-220.249,-128.254,-118.621,-92.3491,0,-79.1037	1/2:119:0,57,62:0:0:57,62:2016,2228:-346.316,-182.12,-164.961,-164.552,0,-145.888	1/2:97:0,43,54:0:0:43,54:1488,1944:-279.885,-158.98,-146.036,-121.257,0,-105.001	1/1:163:0,163,0:0:0:163,0:5719,0:-514.817,-49.0679,0,-514.817,-49.0679,-514.817	1/1:153:0,152,0:0:0:152,0:5371,0:-483.311,-45.7566,0,-483.311,-45.7566,-483.311	1/2:80:0,33,47:0:0:33,47:1172,1692:-233.915,-138.418,-128.484,-95.853,0,-81.7046	1/2:209:0,119,90:0:0:119,90:4221,3183:-603.494,-259.598,-223.776,-344.25,0,-317.157	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/1:104:0,103,0:0:0:103,0:3640,0:-327.44,-31.0061,0,-327.44,-31.0061,-327.44	1/1:51:0,51,0:0:0:51,0:1780,0:-160.479,-15.3525,0,-160.479,-15.3525,-160.479	1/2:10:0,7,3:0:0:7,3:248,108:-29.3712,-9.17208,-7.06487,-20.5572,0,-19.6541	1/2:95:0,38,55:0:0:38,55:1335,1931:-265.859,-157.212,-145.773,-108.704,0,-92.1469	1/1:84:0,81,2:0:0:81,2:2873,72:-258.485,-24.3834,0,-252.61,-18.4222,-252.008	1/2:7: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chr06	5619476	.	A	G	145108	PASS	AB=0.612444;ABP=250.11;AC=158;AF=0.849462;AN=186;AO=6607;CIGAR=1X;DP=7488;DPB=7488;DPRA=0;EPP=14349.9;EPPR=1913.91;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.8744;MQMR=59.9886;NS=93;NUMALT=1;ODDS=3.28371;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235569;QR=31408;RO=880;RPL=6606;RPP=14341.2;RPPR=1913.91;RPR=1;RUN=1;SAF=6606;SAP=14341.2;SAR=1;SRF=880;SRP=1913.91;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:864:-78.0817,-7.22472,0	1/1:101:0,101:0:0:101:3628:-326.722,-30.404,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:198:0,198:0:0:198:7057:-635.174,-59.6039,0	0/1:62:11,51:11:396:51:1813:-144.786,0,-17.3189	1/1:41:0,40:0:0:40:1417:-127.465,-12.0412,0	1/1:156:0,156:0:0:156:5592:-503.159,-46.9607,0	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	1/1:41:1,40:1:36:40:1432:-125.579,-8.74396,0	0/1:118:59,59:59:2100:59:2098:-153.565,0,-153.748	0/1:54:30,24:30:1080:24:856:-61.1031,0,-81.2576	1/1:58:0,58:0:0:58:2074:-186.927,-17.4597,0	1/1:30:0,30:0:0:30:1080:-97.5105,-9.0309,0	0/1:38:13,25:13:460:25:891:-69.0696,0,-30.2962	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:41:12,29:12:428:29:1036:-81.2095,0,-26.5166	1/1:56:0,56:0:0:56:1994:-179.727,-16.8577,0	1/1:43:0,43:0:0:43:1531:-138.081,-12.9443,0	1/1:25:0,25:0:0:25:900:-81.3201,-7.52575,0	1/1:146:0,146:0:0:146:5225:-470.157,-43.9504,0	0/1:119:33,86:33:1172:86:3063:-240.077,0,-69.9649	1/1:99:0,99:0:0:99:3519:-316.92,-29.802,0	0/1:96:51,45:51:1816:45:1594:-114.85,0,-134.823	0/1:86:16,70:16:572:70:2504:-199.096,0,-25.9248	0/1:36:9,27:9:324:27:957:-75.6068,0,-18.6688	1/1:292:2,290:2:72:290:10356:-925.114,-81.064,0	1/1:124:0,124:0:0:124:4389:-395.181,-37.3277,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:165:79,86:79:2818:86:3080:-227.755,0,-204.188	0/1:93:18,75:18:640:75:2688:-214.169,0,-29.9335	1/1:105:0,105:0:0:105:3748:-337.517,-31.6082,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:208:84,124:84:3008:124:4413:-334.727,0,-208.329	1/1:143:0,143:0:0:143:5116:-460.578,-43.0473,0	1/1:57:0,57:0:0:57:2009:-181.078,-17.1587,0	.:.:.:.:.:.:.:.	1/1:136:0,136:0:0:136:4857:-437.254,-40.9401,0	1/1:36:0,36:0:0:36:1292:-116.579,-10.8371,0	0/1:99:11,88:11:396:88:3120:-251.151,0,-6.18078	0/1:77:42,35:42:1504:35:1247:-89.3548,0,-112.475	0/1:71:40,31:40:1436:31:1108:-78.6555,0,-108.165	0/1:93:40,53:40:1424:53:1888:-142.202,0,-100.462	1/1:26:0,26:0:0:26:911:-82.305,-7.82678,0	1/1:160:0,160:0:0:160:5699:-513.004,-48.1648,0	1/1:148:0,148:0:0:148:5281:-475.424,-44.5524,0	0/1:80:47,33:47:1680:33:1184:-82.7722,0,-127.405	0/1:181:67,114:67:2384:114:4070:-311.998,0,-160.332	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:84:0,84:0:0:84:2980:-268.429,-25.2865,0	1/1:49:0,49:0:0:49:1744:-157.243,-14.7505,0	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	0/1:51:12,39:12:428:39:1376:-108.782,0,-23.5063	1/1:81:2,79:2:72:79:2824:-247.56,-17.5467,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:55:11,44:11:396:44:1568:-124.853,0,-19.4261	1/1:149:0,149:0:0:149:5343:-480.894,-44.8535,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:152:0,152:0:0:152:5393:-485.491,-45.7566,0	1/1:157:1,156:1:36:156:5571:-497.9,-43.6634,0	1/1:88:0,88:0:0:88:3151:-283.814,-26.4906,0	1/1:67:0,67:0:0:67:2360:-212.43,-20.169,0	1/1:175:0,175:0:0:175:6211:-558.922,-52.6803,0	1/1:139:2,137:2:68:137:4868:-431.809,-35.3855,0	1/1:33:0,33:0:0:33:1180:-106.505,-9.93399,0	1/1:65:0,65:0:0:65:2291:-206.448,-19.567,0	1/1:97:0,97:0:0:97:3442:-309.98,-29.1999,0	0/1:17:11,6:11:388:6:212:-14.3073,0,-30.1399	1/1:108:0,108:0:0:108:3845:-346.153,-32.5112,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:109:25,84:25:892:84:3004:-237.779,0,-47.7874	1/1:107:0,107:0:0:107:3822:-344.174,-32.2102,0	1/1:36:0,36:0:0:36:1288:-116.22,-10.8371,0	1/1:48:0,48:0:0:48:1696:-152.925,-14.4494,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:77:0,77:0:0:77:2764:-248.945,-23.1793,0	1/1:49:0,49:0:0:49:1756:-158.323,-14.7505,0	1/1:287:0,287:0:0:287:10235:-921.065,-86.3956,0	1/1:118:0,118:0:0:118:4220:-379.978,-35.5215,0	1/1:73:0,73:0:0:73:2592:-233.527,-21.9752,0	0/1:126:65,61:65:2302:61:2183:-158.806,0,-169.511	1/1:148:0,148:0:0:148:5274:-474.797,-44.5524,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:76:0,76:0:0:76:2716:-244.682,-22.8783,0	1/1:60:0,60:0:0:60:2139:-192.774,-18.0618,0	1/1:45:0,45:0:0:45:1612:-145.297,-13.5464,0	0/1:68:14,54:14:500:54:1924:-152.732,0,-24.8661	0/1:85:61,24:61:2184:24:855:-51.678,0,-171.238	1/1:80:0,80:0:0:80:2851:-256.819,-24.0824,0	1/1:113:0,113:0:0:113:4009:-360.994,-34.0164,0
chr06	5619488	.	G	A	33331.5	PASS	AB=0.541795;ABP=57.2825;AC=43;AF=0.228723;AN=188;AO=1961;CIGAR=1X;DP=8714;DPB=8714;DPRA=1.05722;EPP=4261.27;EPPR=14660.4;GTI=1;LEN=1;MEANALT=1.03774;MQM=59.9714;MQMR=59.9815;NS=94;NUMALT=1;ODDS=0.198931;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69705;QR=234106;RO=6750;RPL=0;RPP=4261.27;RPPR=14660.4;RPR=1961;RUN=1;SAF=0;SAP=4261.27;SAR=1961;SRF=0;SRP=14660.4;SRR=6750;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:10,4:10:348:4:135:-8.26809,0,-27.4407	0/0:107:106,1:106:3739:1:36:0,-28.6119,-333.114	0/1:103:48,55:48:1687:55:1953:-145.023,0,-121.11	0/0:157:157,0:157:5443:0:0:0,-47.2617,-490.009	0/1:47:24,23:24:832:23:811:-59.1616,0,-61.0456	0/1:53:17,36:17:612:36:1288:-100.269,0,-39.4588	0/0:177:177,0:177:6075:0:0:0,-53.2823,-546.862	0/1:158:63,95:63:2137:95:3376:-256.493,0,-145.029	0/1:97:42,55:42:1425:55:1960:-147.474,0,-99.3394	0/1:98:34,64:34:1169:64:2273:-175.33,0,-76.0081	0/1:68:38,30:38:1336:30:1061:-75.3293,0,-100.068	0/0:85:85,0:85:2917:0:0:0,-25.5875,-262.767	0/1:87:37,50:37:1248:50:1796:-135.733,0,-86.424	0/1:115:62,53:62:2147:53:1859:-132.968,0,-158.881	0/0:65:65,0:65:2194:0:0:0,-19.5669,-197.721	0/1:60:32,28:32:1082:28:984:-70.8108,0,-79.6186	0/0:79:79,0:79:2760:0:0:0,-23.7814,-248.643	0/0:61:61,0:61:2103:0:0:0,-18.3628,-189.535	0/0:35:35,0:35:1218:0:0:0,-10.536,-109.922	0/0:192:189,2:189:6617:2:72:0,-51.0198,-588.78	0/1:136:58,78:58:2025:78:2751:-206.761,0,-141.574	0/0:84:84,0:84:2936:0:0:0,-25.2865,-264.474	0/1:110:45,65:45:1579:65:2288:-173.064,0,-109.284	0/1:145:47,98:47:1610:98:3498:-271.381,0,-101.532	0/1:65:30,35:30:1060:35:1237:-92.0653,0,-76.1443	0/0:231:231,0:231:8083:0:0:0,-69.5379,-727.498	0/0:189:188,1:188:6600:1:36:0,-53.2964,-590.433	0/0:41:41,0:41:1395:0:0:0,-12.3422,-125.842	0/1:244:123,121:123:4313:121:4323:-315.795,0,-314.897	0/1:124:53,71:53:1853:71:2500:-187.924,0,-129.72	0/0:142:140,2:140:4857:2:72:0,-35.9095,-430.452	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:281:132,149:132:4518:149:5322:-394.525,0,-322.207	0/0:162:162,0:162:5537:0:0:0,-48.7669,-498.465	0/0:80:80,0:80:2822:0:0:0,-24.0824,-254.22	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:105:105,0:105:3687:0:0:0,-31.6081,-332.036	0/0:47:47,0:47:1622:0:0:0,-14.1484,-146.267	0/1:121:48,73:48:1680:73:2601:-197.912,0,-115.059	0/1:65:32,33:32:1105:33:1179:-86.8503,0,-80.1873	0/1:76:35,41:35:1183:41:1461:-108.906,0,-83.8895	0/1:81:30,51:30:1036:51:1813:-139.066,0,-69.1627	0/1:74:36,38:36:1226:38:1353:-99.7922,0,-88.1326	0/0:103:102,1:102:3529:1:36:0,-27.4078,-314.225	0/0:118:117,1:117:4116:1:36:0,-31.9233,-367.027	0/1:111:55,56:55:1930:56:1982:-145.239,0,-140.558	0/1:203:93,110:93:3270:110:3912:-291.164,0,-233.415	0/1:3:2,1:2:63:1:36:-2.69518,0,-5.08006	0/0:111:111,0:111:3884:0:0:0,-33.4143,-349.758	0/0:50:50,0:50:1719:0:0:0,-15.0515,-154.989	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/1:128:77,51:77:2691:51:1832:-126.629,0,-203.901	0/0:75:75,0:75:2604:0:0:0,-22.5772,-234.608	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:12:5,7:5:167:7:252:-19.4166,0,-11.746	0/1:106:44,62:44:1485:62:2196:-165.994,0,-102.025	0/0:157:155,2:155:5357:2:72:0,-40.425,-475.437	0/1:8:1,7:1:36:7:243:-19.7992,0,-1.19003	0/0:120:120,0:120:4228:0:0:0,-36.1236,-380.704	0/0:138:138,0:138:4777:0:0:0,-41.5421,-430.09	0/0:62:62,0:62:2153:0:0:0,-18.6639,-194.034	0/0:88:88,0:88:3097:0:0:0,-26.4906,-278.959	0/0:143:143,0:143:4935:0:0:0,-43.0473,-444.302	0/0:112:112,0:112:3900:0:0:0,-33.7154,-351.199	0/0:36:36,0:36:1240:0:0:0,-10.8371,-111.899	0/0:89:89,0:89:3094:0:0:0,-26.7917,-278.688	0/0:93:93,0:93:3239:0:0:0,-27.9958,-291.735	0/1:11:5,6:5:180:6:202:-15.1983,0,-13.2407	0/0:143:143,0:143:4904:0:0:0,-43.0473,-441.521	0/1:45:25,20:25:888:20:707:-50.4082,0,-66.6927	0/1:154:73,81:73:2526:81:2891:-214.063,0,-181.231	0/0:104:104,0:104:3642:0:0:0,-31.3071,-327.985	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:79:75,3:75:2606:3:108:0,-13.765,-224.713	0/1:8:5,3:5:150:3:108:-7.66693,0,-11.3869	0/0:98:98,0:98:3435:0:0:0,-29.5009,-309.364	0/0:94:93,1:93:3256:1:36:0,-24.6985,-289.663	0/0:188:188,0:188:6556:0:0:0,-56.5936,-590.13	0/0:116:115,1:115:3995:1:36:0,-31.3212,-356.148	0/0:92:92,0:92:3118:0:0:0,-27.6948,-280.849	0/1:101:54,47:54:1825:47:1653:-118.652,0,-134.123	0/0:151:150,1:150:5168:1:36:0,-41.8573,-461.673	0/1:61:34,27:34:1130:27:972:-69.4351,0,-83.6316	0/0:122:122,0:122:4206:0:0:0,-36.7257,-378.729	0/0:99:99,0:99:3400:0:0:0,-29.802,-306.219	0/0:62:61,0:61:2109:0:0:0,-18.3628,-189.717	0/1:100:55,45:55:1907:45:1616:-115.626,0,-141.802	0/1:81:27,54:27:943:54:1913:-148.062,0,-60.7998	0/0:85:85,0:85:2953:0:0:0,-25.5875,-265.983	0/0:126:126,0:126:4291:0:0:0,-37.9298,-386.378
chr06	5642334	.	ATCTG	TTCTA,ATCTA	588764	PASS	AB=0.554674,0.441421;ABP=215.763,247.241;AC=144,44;AF=0.765957,0.234043;AN=188;AO=18147,3643;CIGAR=1X3M1X,4M1X;DP=21876;DPB=21876.8;DPRA=0,0.943901;EPP=39408.7,7905;EPPR=13.8677;GTI=6;LEN=5,1;MEANALT=2.35106,2.68421;MQM=59.8077,59.9646;MQMR=60;NS=94;NUMALT=2;ODDS=1.11639;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=144,0;PQR=0;PRO=0;QA=633033,130233;QR=174;RO=5;RPL=11444,1960;RPP=2692.62,48.7459;RPPR=3.44459;RPR=6703,1683;RUN=1,1;SAF=11444,1959;SAP=2692.62,48.0879;SAR=6703,1684;SRF=2;SRP=3.44459;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:144:0,83,61:0:0:83,61:2886,2150:-409.989,-175.399,-150.414,-234.941,0,-216.578	1/1:389:0,389,0:0:0:389,0:13634,0:-1225.77,-117.101,0,-1225.77,-117.101,-1225.77	1/2:334:0,183,147:0:0:183,147:6408,5261:-950.373,-429.014,-373.925,-521.354,0,-477.102	1/1:550:0,548,1:0:0:548,1:19135,36:-1721.39,-164.964,0,-1718.46,-161.997,-1718.15	1/2:74:0,34,39:0:0:34,39:1180,1400:-210.057,-114.199,-103.964,-95.8505,0,-84.1104	1/2:81:0,45,36:0:0:45,36:1572,1287:-233.16,-105.296,-91.7494,-128.218,0,-117.381	1/1:351:0,349,1:0:0:349,1:12152,36:-1092.86,-105.059,0,-1089.93,-102.087,-1089.62	1/2:410:0,239,168:0:0:239,168:8333,6014:-1168.02,-490.432,-418.486,-677.586,0,-627.013	1/2:325:0,165,158:0:0:165,158:5715,5630:-923.318,-458.898,-409.228,-464.412,0,-416.849	1/2:229:0,116,112:0:0:116,112:4062,4010:-657.598,-327.102,-292.183,-330.578,0,-296.863	1/2:99:0,50,49:0:0:50,49:1744,1764:-286.099,-144.293,-129.242,-142.16,0,-127.41	1/1:212:0,212,0:0:0:212,0:7345,0:-661.029,-63.8184,0,-661.029,-63.8184,-661.029	1/2:171:0,90,80:0:0:90,80:3176,2871:-492.637,-234.076,-206.984,-258.556,0,-234.474	1/2:156:1,94,61:1:36:94,61:3245,2180:-438.119,-174.806,-149.447,-260.669,0,-245.243	1/1:200:1,198,0:1:36:198,0:6945,0:-621.446,-56.6664,0,-621.747,-59.6039,-624.684	1/2:124:0,71,53:0:0:71,53:2478,1896:-356.486,-154.955,-133.582,-201.884,0,-185.93	1/1:121:0,119,1:0:0:119,1:4134,36:-371.604,-35.8226,0,-368.666,-32.8602,-368.365	1/1:129:0,129,0:0:0:129,0:4480,0:-403.094,-38.8329,0,-403.094,-38.8329,-403.094	1/1:55:0,55,0:0:0:55,0:1925,0:-173.526,-16.5567,0,-173.526,-16.5567,-173.526	1/1:571:0,569,0:0:0:569,0:19917,0:-1791.82,-171.286,0,-1791.82,-171.286,-1791.82	1/2:406:0,212,192:0:0:212,192:7339,6876:-1157.09,-560.79,-496.972,-596.329,0,-538.531	1/1:177:0,176,0:0:0:176,0:6166,0:-554.691,-52.9813,0,-554.691,-52.9813,-554.691	1/2:315:1,167,147:1:36:167,147:5842,5243:-899.37,-424.458,-377.124,-472.269,0,-430.955	1/2:263:0,148,114:0:0:148,114:5178,4075:-753.543,-332.3,-287.747,-421.287,0,-386.969	1/2:182:0,81,100:0:0:81,100:2825,3561:-519.752,-290.067,-265.684,-229.736,0,-199.633	1/1:704:0,703,0:0:0:703,0:24540,0:-2207.56,-211.624,0,-2207.56,-211.624,-2207.56	1/1:624:0,621,2:0:0:621,2:21602,72:-1943.26,-186.94,0,-1937.39,-181.03,-1936.78	1/1:76:0,76,0:0:0:76,0:2672,0:-240.727,-22.8783,0,-240.727,-22.8783,-240.727	1/2:617:0,396,220:0:0:396,220:13949,7832:-1773.91,-638.324,-519.116,-1135.58,0,-1069.35	1/2:289:0,138,149:0:0:138,149:4793,5330:-824.275,-434.639,-393.097,-389.648,0,-344.794	1/1:371:0,362,9:0:0:362,9:12614,316:-1134.48,-108.973,0,-1108.76,-83.2628,-1106.05	1/2:8:0,7,1:0:0:7,1:247,36:-23.4044,-3.29724,-1.19003,-20.4661,0,-20.1651	1/1:9:0,9,0:0:0:9,0:318,0:-28.9564,-2.70927,0,-28.9564,-2.70927,-28.9564	1/2:4:0,3,1:0:0:3,1:104,36:-11.7406,-3.29724,-2.39415,-8.79988,0,-8.49885	1/2:10:0,8,2:0:0:8,2:276,72:-28.599,-6.23466,-3.82642,-22.7211,0,-22.119	1/1:23:0,22,0:0:0:22,0:771,0:-69.4087,-6.62266,0,-69.4087,-6.62266,-69.4087	1/2:374:0,209,165:0:0:209,165:7334,5887:-1077.11,-480.272,-417.357,-597.19,0,-547.52	1/1:304:0,302,0:0:0:302,0:10347,0:-930.855,-90.9111,0,-930.855,-90.9111,-930.855	1/1:113:0,112,0:0:0:112,0:3933,0:-353.777,-33.7154,0,-353.777,-33.7154,-353.777	1/2:5:0,3,2:0:0:3,2:108,68:-14.6799,-5.85565,-4.95256,-9.17208,0,-8.57002	1/1:472:0,471,0:0:0:471,0:16457,0:-1480.13,-141.785,0,-1480.13,-141.785,-1480.13	1/1:56:0,55,0:0:0:55,0:1910,0:-171.893,-16.5567,0,-171.893,-16.5567,-171.893	1/2:367:0,184,182:0:0:184,182:6425,6528:-1055.06,-532.564,-477.174,-522.602,0,-467.815	1/2:125:0,85,40:0:0:85,40:2980,1432:-359.631,-117.136,-91.5483,-242.85,0,-230.809	1/2:119:0,70,49:0:0:70,49:2475,1747:-344.337,-142.763,-121.691,-201.929,0,-187.178	1/2:267:0,129,135:0:0:129,135:4499,4828:-759.584,-393.706,-354.873,-365.9,0,-325.261	1/2:264:0,164,99:0:0:164,99:5744,3552:-755.889,-289.815,-240.446,-466.159,0,-436.357	1/1:430:0,430,0:0:0:430,0:15021,0:-1350.61,-129.443,0,-1350.61,-129.443,-1350.61	1/1:248:0,248,0:0:0:248,0:8601,0:-774.114,-74.6554,0,-774.114,-74.6554,-774.114	1/2:280:0,167,113:0:0:167,113:5865,4026:-805.831,-328.488,-278.216,-477.697,0,-443.681	1/2:345:0,191,154:0:0:191,154:6630,5524:-989.51,-450.566,-393.069,-538.938,0,-492.58	1/2:18:0,3,15:0:0:3,15:108,534:-52.6912,-43.8783,-42.9752,-9.17208,0,-4.65663	1/1:404:0,404,0:0:0:404,0:14044,0:-1263.41,-121.616,0,-1263.41,-121.616,-1263.41	1/1:116:0,114,0:0:0:114,0:3994,0:-359.291,-34.3174,0,-359.291,-34.3174,-359.291	1/2:11:0,7,4:0:0:7,4:252,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chr06	5642380	.	CCTGCT	CTTGCT	141084	PASS	AB=0.500431;ABP=3.01591;AC=143;AF=0.768817;AN=186;AO=6579;CIGAR=1M1X4M;DP=8411;DPB=8411;DPRA=45.7011;EPP=14289.1;EPPR=3731.43;GTI=4;LEN=1;MEANALT=1.58696;MQM=59.603;MQMR=59.9953;NS=93;NUMALT=1;ODDS=2.30034;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235381;QR=60807;RO=1717;RPL=6579;RPP=14289.1;RPPR=3731.43;RPR=0;RUN=1;SAF=0;SAP=14289.1;SAR=6579;SRF=0;SRP=3731.43;SRR=1717;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:37,43:37:1301:43:1521:-112.683,0,-92.95	1/1:90:0,88:0:0:88:3141:-282.544,-26.4906,0	0/1:152:83,69:83:2936:69:2469:-176.679,0,-218.719	1/1:173:0,172:0:0:172:6168:-554.847,-51.7772,0	0/1:29:21,8:21:751:8:288:-17.5375,0,-59.1865	0/1:17:6,11:6:214:11:377:-29.1288,0,-14.4903	1/1:82:1,81:1:36:81:2894:-256.717,-21.0862,0	0/1:114:54,60:54:1922:60:2148:-159.138,0,-138.939	0/1:179:85,90:85:2998:90:3224:-237.272,0,-217.014	0/1:88:44,42:44:1576:42:1512:-110.122,0,-115.888	0/1:53:26,27:26:930:27:968:-71.3528,0,-68.0639	1/1:128:0,126:0:0:126:4528:-407.205,-37.9298,0	0/1:96:51,44:51:1823:44:1584:-113.741,0,-135.394	0/1:69:34,34:34:1207:34:1224:-89.6088,0,-88.1062	1/1:121:1,111:1:36:111:3965:-353.364,-30.4767,0	0/1:73:38,33:38:1335:33:1186:-85.2891,0,-98.7169	1/1:37:0,37:0:0:37:1328:-119.678,-11.1381,0	1/1:47:0,44:0:0:44:1569:-141.122,-13.2453,0	1/1:30:0,30:0:0:30:1057:-95.4381,-9.0309,0	1/1:180:0,180:0:0:180:6441:-579.713,-54.1854,0	0/1:172:102,68:102:3584:68:2436:-167.899,0,-271.236	1/1:54:0,54:0:0:54:1936:-174.501,-16.2556,0	0/1:149:72,77:72:2547:77:2764:-203.932,0,-184.628	0/1:103:56,47:56:1993:47:1692:-121.532,0,-148.639	0/1:113:67,46:67:2381:46:1644:-114.176,0,-180.531	1/1:208:1,207:1:33:207:7409:-663.498,-59.3151,0	1/1:256:1,255:1:36:255:9109:-815.979,-73.4654,0	1/1:30:0,29:0:0:29:1044:-93.9104,-8.72987,0	0/1:215:79,135:79:2800:135:4821:-369.258,0,-187.461	0/1:55:32,23:32:1131:23:828:-58.2793,0,-85.5404	1/1:106:5,98:5:180:98:3512:-299.698,-14.8139,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:6:0,6:0:0:6:212:-19.4201,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:7:2,5:2:72:5:180:-14.3991,0,-4.72951	1/1:20:0,20:0:0:20:701:-63.3932,-6.0206,0	0/1:228:109,115:109:3863:115:4120:-303.114,0,-280.079	1/1:62:0,62:0:0:62:2209:-199.05,-18.6639,0	1/1:69:0,67:0:0:67:2408:-216.489,-20.169,0	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	1/1:86:0,84:0:0:84:3001:-269.965,-25.2865,0	1/1:33:0,32:0:0:32:1144:-102.832,-9.63296,0	0/1:141:73,67:73:2593:67:2397:-173.312,0,-191.116	0/1:41:16,22:16:571:22:792:-59.8067,0,-39.9245	0/1:47:24,21:24:853:21:756:-54.4594,0,-63.1894	0/1:134:62,71:62:2175:71:2548:-189.173,0,-155.619	0/1:79:45,34:45:1586:34:1220:-86.3078,0,-119.249	1/1:71:0,71:0:0:71:2529:-227.851,-21.3731,0	1/1:65:0,65:0:0:65:2336:-210.489,-19.567,0	0/1:54:27,26:27:964:26:917:-66.5286,0,-70.7629	0/1:196:112,84:112:3990:84:3001:-211.31,0,-300.291	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:155:0,153:0:0:153:5448:-489.697,-46.0576,0	1/1:52:0,50:0:0:50:1781:-160.144,-15.0515,0	.:.:.:.:.:.:.:.	0/1:109:43,66:43:1528:66:2370:-180.442,0,-105.001	1/1:70:0,70:0:0:70:2500:-225.155,-21.0721,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:116:60,56:60:2101:56:1993:-144.653,0,-154.438	1/1:118:0,115:0:0:115:4120:-370.608,-34.6185,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:102:0,101:0:0:101:3628:-326.333,-30.404,0	1/1:176:1,173:1:36:173:6204:-554.858,-49.1191,0	1/1:79:0,78:0:0:78:2804:-252.223,-23.4803,0	1/1:51:0,51:0:0:51:1813:-163.441,-15.3525,0	1/1:151:0,151:0:0:151:5407:-486.317,-45.4555,0	1/1:159:0,156:0:0:156:5604:-504.085,-46.9607,0	1/1:60:0,59:0:0:59:2097:-188.552,-17.7608,0	1/1:99:0,99:0:0:99:3541:-318.826,-29.802,0	1/1:60:0,59:0:0:59:2120:-190.577,-17.7608,0	0/1:26:13,13:13:466:13:468:-34.6329,0,-34.452	1/1:112:0,112:0:0:112:4012:-361.124,-33.7154,0	0/1:82:23,59:23:827:59:2112:-165.637,0,-50.0695	0/1:201:78,119:78:2741:119:4268:-324.626,0,-187.272	1/1:143:0,143:0:0:143:5136:-462.325,-43.0473,0	1/1:63:0,53:0:0:53:1877:-168.78,-15.9546,0	1/1:108:0,107:0:0:107:3827:-344.202,-32.2102,0	0/1:13:9,4:9:321:4:144:-9.40023,0,-25.3201	1/1:95:1,94:1:35:94:3376:-300.5,-25.0992,0	1/1:121:1,119:1:36:119:4280:-381.769,-32.8752,0	1/1:241:0,241:0:0:241:8567:-770.847,-72.5482,0	1/1:76:0,75:0:0:75:2688:-241.77,-22.5773,0	1/1:92:0,86:0:0:86:3076:-276.688,-25.8886,0	0/1:43:24,19:24:845:19:669:-47.585,0,-63.4247	1/1:126:0,125:0:0:125:4450:-400.281,-37.6288,0	0/1:27:9,18:9:322:18:644:-50.1275,0,-21.1965	1/1:71:0,71:0:0:71:2518:-226.799,-21.3731,0	1/1:100:1,92:1:34:92:3308:-294.428,-24.9389,0	1/1:50:0,47:0:0:47:1684:-151.472,-14.1484,0	0/1:91:38,49:38:1351:49:1760:-132.135,0,-95.3624	0/1:60:37,23:37:1288:23:820:-56.0607,0,-98.1563	1/1:90:0,90:0:0:90:3205:-288.648,-27.0927,0	1/1:151:1,145:1:36:145:5192:-463.523,-40.7119,0
chr06	5725187	.	A	G	22371.8	PASS	AB=0.472796;ABP=21.6772;AC=49;AF=0.263441;AN=186;AO=1377;CIGAR=1X;DP=6363;DPB=6363;DPRA=0.813961;EPP=2984.45;EPPR=10777.9;GTI=3;LEN=1;MEANALT=1.02;MQM=59.9586;MQMR=59.9988;NS=93;NUMALT=1;ODDS=3.16316;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49141;QR=178058;RO=4982;RPL=1376;RPP=2984.45;RPPR=10777.9;RPR=1;RUN=1;SAF=0;SAP=2993.13;SAR=1377;SRF=0;SRP=10821.3;SRR=4982;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:10,13:10:360:13:460:-34.8111,0,-25.8206	0/1:73:43,30:43:1521:30:1071:-74.7264,0,-115.206	0/1:87:50,37:50:1784:37:1307:-91.7398,0,-134.653	0/0:107:106,0:106:3788:0:0:0,-31.9092,-340.908	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.211	0/1:125:68,57:68:2432:57:2043:-146.512,0,-181.507	0/1:131:73,58:73:2624:58:2058:-146.055,0,-196.972	0/1:72:40,32:40:1420:32:1148:-81.9553,0,-106.423	0/1:34:18,16:18:648:16:572:-41.5784,0,-48.4169	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:35:19,16:19:676:16:576:-41.6389,0,-50.6319	0/1:52:24,28:24:864:28:1008:-75.3828,0,-62.429	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:25:8,17:8:288:17:606:-47.3453,0,-18.7417	0/1:35:18,17:18:648:17:595:-43.3406,0,-48.1158	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:125:50,75:50:1792:75:2645:-200.665,0,-123.934	0/1:109:57,52:57:2044:52:1872:-135.947,0,-151.42	0/0:89:89,0:89:3177:0:0:0,-26.7917,-286.153	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.0815	0/1:96:67,29:67:2412:29:1044:-65.3759,0,-188.437	0/1:70:29,41:29:1036:41:1459:-110.214,0,-72.4818	0/0:204:203,0:203:7257:0:0:0,-61.1091,-652.822	0/0:220:220,0:220:7835:0:0:0,-66.2266,-705.178	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:127:76,51:76:2705:51:1832:-126.93,0,-205.462	0/1:57:32,25:32:1144:25:900:-64.1623,0,-86.1108	0/1:55:22,33:22:792:33:1184:-90.3117,0,-55.049	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:134:68,66:68:2436:66:2350:-171.42,0,-179.157	0/0:148:148,0:148:5286:0:0:0,-44.5524,-475.873	0/1:40:22,18:22:784:18:648:-46.6107,0,-58.8427	.:.:.:.:.:.:.:.	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.337	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:132:88,44:88:3160:44:1564:-101.295,0,-244.888	0/1:31:11,20:11:396:20:712:-55.0747,0,-26.6508	0/1:24:12,12:12:432:12:419:-30.818,0,-31.9965	0/0:105:105,0:105:3721:0:0:0,-31.6081,-335.09	0/1:84:37,47:37:1313:47:1688:-126.92,0,-93.1832	0/0:113:113,0:113:4036:0:0:0,-34.0164,-363.429	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/1:62:34,28:34:1216:28:989:-70.6582,0,-91.0827	0/0:184:184,0:184:6562:0:0:0,-55.3895,-590.661	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.828	0/1:20:15,5:15:532:5:180:-10.5315,0,-42.1925	0/1:18:7,10:7:248:10:360:-27.267,0,-17.1876	0/1:64:34,30:34:1224:30:1071:-77.4357,0,-91.2011	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:13:4,9:4:144:9:316:-24.8655,0,-9.40023	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:60:37,23:37:1309:23:814:-55.5193,0,-100.048	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:103:103,0:103:3681:0:0:0,-31.0061,-331.492	0/0:192:192,0:192:6896:0:0:0,-57.7978,-620.705	0/1:64:34,30:34:1216:30:1072:-77.5265,0,-90.4806	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.554	0/0:102:102,0:102:3626:0:0:0,-30.7051,-326.544	0/0:102:102,0:102:3590:0:0:0,-30.7051,-323.303	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/0:77:76,0:76:2694:0:0:0,-22.8783,-242.49	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:33:14,19:14:504:19:676:-51.234,0,-35.7641	0/1:134:79,55:79:2836:55:1968:-137.057,0,-215.14	0/1:68:36,32:36:1296:32:1137:-82.1669,0,-96.4739	0/1:202:91,111:91:3257:111:3966:-296.324,0,-232.541	0/0:137:136,1:136:4848:1:36:0,-37.6428,-432.875	0/0:51:50,1:50:1772:1:36:0,-11.7543,-156.162	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/1:17:10,7:10:360:7:244:-17.1813,0,-27.6268	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.723	0/0:177:177,0:177:6340:0:0:0,-53.2823,-570.691	0/1:55:28,27:28:1008:27:972:-71.2413,0,-74.4797	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	0/1:78:39,39:39:1381:39:1387:-101.648,0,-101.106	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:23:7,16:7:237:16:568:-44.5282,0,-14.7354	0/1:87:50,37:50:1788:37:1332:-93.9928,0,-135.013	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/0:85:85,0:85:3032:0:0:0,-25.5875,-273.111	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922
chr06	5732263	.	TAG	CAA,TAA	104191	PASS	AB=0.500553,0.497602;ABP=3.01751,3.14567;AC=131,53;AF=0.711957,0.288043;AN=184;AO=3721,1388;CIGAR=1X1M1X,2M1X;DP=5130;DPB=5130.33;DPRA=14.3764,1.09531;EPP=7953.3,2930.78;EPPR=5.18177;GTI=3;LEN=3,1;MEANALT=1.91011,2.10606;MQM=59.7638,59.9035;MQMR=34;NS=92;NUMALT=2;ODDS=0.27542;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=127175,49033;QR=21;RO=1;RPL=3706,1378;RPP=7953.3,2930.78;RPPR=5.18177;RPR=15,10;RUN=1,1;SAF=3721,1388;SAP=8083.06,3017.01;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:17:0,6,11:0:0:6,11:214,392:-49.7539,-32.3087,-30.5025,-17.8016,0,-14.4903	1/2:37:0,14,23:0:0:14,23:457,800:-101.587,-65.3948,-61.1804,-36.5234,0,-29.5998	1/2:22:0,9,13:0:0:9,13:311,464:-63.2151,-38.1794,-35.4701,-25.384,0,-21.4706	1/1:90:0,90,0:0:0:90,0:3073,0:-276.673,-27.0927,0,-276.673,-27.0927,-276.673	1/2:11:0,8,2:0:0:8,2:276,72:-28.3293,-5.90986,-3.50162,-22.4682,0,-21.8661	1/1:9:0,9,0:0:0:9,0:317,0:-28.8697,-2.70927,0,-28.8697,-2.70927,-28.8697	1/1:34:0,34,0:0:0:34,0:1150,0:-103.798,-10.235,0,-103.798,-10.235,-103.798	1/2:47:0,13,33:0:0:13,33:459,1176:-133.04,-95.9316,-92.0182,-37.1745,0,-27.2405	1/2:55:0,31,24:0:0:31,24:1085,852:-158.045,-69.771,-60.439,-88.6264,0,-81.4017	1/2:128:0,59,69:0:0:59,69:2050,2437:-365.472,-198.812,-181.052,-167.009,0,-146.238	1/2:59:0,34,25:0:0:34,25:1164,885:-166.919,-72.4408,-62.2058,-94.8272,0,-87.3014	1/1:70:0,69,1:0:0:69,1:2350,36:-211.396,-20.7711,0,-208.458,-17.4738,-208.157	1/2:79:0,34,45:0:0:34,45:1170,1592:-225.043,-130.024,-119.789,-95.3673,0,-81.821	1/2:28:0,12,16:0:0:12,16:430,560:-80.9854,-45.9123,-42.2999,-35.4277,0,-30.6113	1/1:70:0,69,0:0:0:69,0:2396,0:-215.627,-20.7711,0,-215.627,-20.7711,-215.627	1/2:73:0,35,38:0:0:35,38:1217,1345:-208.853,-109.909,-99.373,-99.2944,0,-87.8553	1/2:24:0,13,11:0:0:13,11:450,387:-68.4221,-31.8546,-27.9412,-36.9166,0,-33.6053	1/1:25:0,25,0:0:0:25,0:873,0:-78.8856,-7.52575,0,-78.8856,-7.52575,-78.8856	1/1:21:0,21,0:0:0:21,0:717,0:-64.8461,-6.32163,0,-64.8461,-6.32163,-64.8461	1/2:115:0,54,61:0:0:54,61:1851,2130:-322.291,-172.583,-156.327,-150.053,0,-131.69	1/2:131:0,70,61:0:0:70,61:2388,2167:-370.665,-176.934,-155.861,-194.08,0,-175.717	1/1:37:0,36,1:0:0:36,1:1211,36:-108.925,-10.8371,0,-105.987,-7.53984,-105.686	1/2:58:0,30,28:0:0:30,28:1051,994:-166.501,-80.9859,-71.955,-85.5083,0,-77.0795	1/2:48:0,18,30:0:0:18,30:625,1036:-134.194,-84.5152,-79.0967,-50.0211,0,-40.9902	1/2:28:0,12,16:0:0:12,16:399,561:-78.2753,-45.9983,-42.3859,-32.6171,0,-27.8007	1/1:115:0,111,2:0:0:111,2:3767,68:-337.303,-33.4143,0,-331.787,-27.8636,-331.185	1/1:113:0,112,0:0:0:112,0:3882,0:-347.943,-33.7154,0,-347.943,-33.7154,-347.943	1/1:37:0,36,1:0:0:36,1:1206,36:-108.477,-10.8371,0,-105.539,-7.53984,-105.238	1/2:97:0,59,38:0:0:59,38:2022,1345:-274.049,-109.909,-92.1482,-164.489,0,-153.05	1/2:46:0,19,27:0:0:19,27:624,968:-129.717,-79.3096,-73.59,-50.7486,0,-42.6208	1/2:47:0,23,24:0:0:23,24:811,844:-135.089,-69.0542,-62.1305,-66.3873,0,-59.1626	1/1:2:0,2,0:0:0:2,0:64,0:-6.0781,-0.60206,0,-6.0781,-0.60206,-6.0781	1/1:6:0,6,0:0:0:6,0:212,0:-19.425,-1.80618,0,-19.425,-1.80618,-19.425	.:.:.:.:.:.:.:.	1/2:6:0,3,3:0:0:3,3:104,108:-17.6188,-9.17208,-8.26899,-8.79993,0,-7.89684	1/1:14:0,13,0:0:0:13,0:436,0:-39.2747,-3.91339,0,-39.2747,-3.91339,-39.2747	1/2:206:0,101,105:0:0:101,105:3512,3727:-589.51,-303.969,-273.565,-285.892,0,-254.284	1/1:24:0,22,2:0:0:22,2:731,68:-65.758,-6.62266,0,-60.2415,-0.767012,-59.6395	1/2:45:0,19,26:0:0:19,26:643,920:-127.411,-75.2903,-69.5707,-52.4657,0,-44.6389	.:.:.:.:.:.:.:.	1/1:71:0,71,0:0:0:71,0:2418,0:-217.876,-21.3731,0,-217.876,-21.3731,-217.876	1/1:37:0,34,1:0:0:34,1:1208,36:-108.297,-10.235,0,-105.359,-7.2976,-105.058	1/2:41:0,14,27:0:0:14,27:468,968:-117.19,-79.3096,-75.0951,-38.2233,0,-30.0955	1/2:52:0,26,26:0:0:26,26:914,910:-148.786,-74.3885,-66.5618,-74.7486,0,-66.9218	1/2:56:0,28,28:0:0:28,28:944,991:-157.567,-81.0747,-72.6458,-76.8375,0,-68.4087	1/1:22:0,22,0:0:0:22,0:754,0:-68.1743,-6.62266,0,-68.1743,-6.62266,-68.1743	1/2:45:0,14,31:0:0:14,31:441,1072:-122.908,-87.4531,-83.2387,-35.7792,0,-26.4473	1/1:42:0,42,0:0:0:42,0:1420,0:-128.087,-12.6433,0,-128.087,-12.6433,-128.087	1/1:43:0,43,0:0:0:43,0:1478,0:-133.307,-12.9443,0,-133.307,-12.9443,-133.307	1/2:71:0,27,44:0:0:27,44:938,1559:-203.494,-127.243,-119.116,-76.6002,0,-63.3549	1/1:62:0,62,0:0:0:62,0:2072,0:-186.739,-18.6639,0,-186.739,-18.6639,-186.739	1/2:2:0,1,1:0:0:1,1:34,36:-6.04527,-3.29724,-2.99621,-3.09788,0,-2.79685	1/2:54:0,48,6:0:0:48,6:1629,208:-149.349,-17.2529,-2.80346,-132.442,0,-130.636	1/2:32:0,21,9:0:0:21,9:720,324:-84.8753,-26.4368,-20.1151,-58.4341,0,-55.7249	2/2:7:0,0,7:0:0:0,7:0,248:-22.6642,-22.6642,-22.6642,-2.10721,-2.10721,0	1/2:82:0,43,39:0:0:43,39:1446,1383:-230.158,-113.026,-100.081,-117.478,0,-105.738	1/1:4:0,4,0:0:0:4,0:136,0:-12.575,-1.20412,0,-12.575,-1.20412,-12.575	2/2:4:0,0,4:0:0:0,4:0,140:-12.9446,-12.9446,-12.9446,-1.20412,-1.20412,0	1/1:17:0,17,0:0:0:17,0:590,0:-53.4237,-5.11751,0,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chr06	5732308	.	A	C	2582.09	PASS	AB=0.472506;ABP=22.9511;AC=49;AF=0.263441;AN=186;AO=1444;CIGAR=1X;DP=6399;DPB=6399;DPRA=0.996347;EPP=3095.34;EPPR=10697.6;GTI=13;LEN=1;MEANALT=1.01887;MQM=19.2784;MQMR=29.9582;NS=93;NUMALT=1;ODDS=0.383732;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51779;QR=177622;RO=4953;RPL=8;RPP=3069.51;RPPR=10593.9;RPR=1436;RUN=1;SAF=3;SAP=3112.61;SAR=1441;SRF=12;SRP=10654.3;SRR=4941;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:10,7:10:360:7:252:-6.35947,0,-18.9847	0/1:67:30,37:30:1076:37:1317:-38.9606,0,-50.6354	0/1:36:14,22:14:504:22:788:-25.8764,0,-22.1255	0/0:162:162,0:162:5801:0:0:0,-48.7669,-430.436	0/0:14:14,0:14:504:0:0:0,-4.21442,-36.664	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.6486	0/0:71:71,0:71:2541:0:0:0,-21.3731,-187.068	0/1:71:34,37:34:1224:37:1332:-38.7871,0,-59.9389	0/1:36:21,15:21:756:15:536:-13.5425,0,-39.4863	0/1:162:99,63:99:3543:63:2256:-63.229,0,-215.618	0/1:53:22,31:22:788:31:1112:-39.4664,0,-42.8749	0/0:69:69,0:69:2471:0:0:0,-20.7711,-163.597	0/1:74:47,27:47:1688:27:968:-21.4708,0,-88.4423	0/1:67:36,31:36:1292:31:1116:-27.46,0,-71.0691	0/0:71:71,0:71:2532:0:0:0,-21.3731,-184.615	0/1:47:21,26:21:743:26:932:-25.6693,0,-39.0626	0/1:73:37,36:37:1332:36:1296:-36.3064,0,-64.487	0/0:64:64,0:64:2296:0:0:0,-19.2659,-149.423	0/0:41:41,0:41:1472:0:0:0,-12.3422,-96.7467	0/1:89:46,43:46:1652:43:1548:-50.6391,0,-96.3246	0/1:122:71,49:71:2548:49:1764:-37.9026,0,-142.706	0/0:31:31,0:31:1112:0:0:0,-9.33193,-85.9494	0/1:30:11,19:11:396:19:669:-24.9672,0,-20.7766	0/1:91:49,42:49:1756:42:1497:-37.9169,0,-95.5795	0/1:15:9,6:9:324:6:216:-6.22745,0,-18.6174	0/0:160:156,4:156:5589:4:144:0,-41.1661,-427.322	0/0:93:93,0:93:3333:0:0:0,-27.9958,-233.469	0/0:45:45,0:45:1620:0:0:0,-13.5463,-114.536	0/1:120:60,60:60:2143:60:2160:-82.903,0,-131.012	0/1:70:32,38:32:1152:38:1364:-41.8305,0,-60.3014	0/1:95:55,40:55:1980:40:1440:-42.5082,0,-118.654	0/0:8:8,0:8:288:0:0:0,-2.40824,-20.5939	0/0:14:14,0:14:504:0:0:0,-4.21442,-35.1614	1/1:1:0,1:0:0:1:36:-1.79328,-0.30103,0	0/1:7:4,3:4:144:3:108:-3.87325,0,-7.69261	0/0:5:5,0:5:180:0:0:0,-1.50515,-12.1836	0/1:193:101,92:101:3623:92:3289:-122.693,0,-225.095	0/0:75:75,0:75:2700:0:0:0,-22.5772,-189.678	0/1:53:24,29:24:855:29:1040:-32.2849,0,-41.1304	.:.:.:.:.:.:.:.	0/0:102:102,0:102:3660:0:0:0,-30.7051,-257.657	0/0:39:39,0:39:1400:0:0:0,-11.7402,-97.6561	0/1:25:15,10:15:540:10:360:-7.89579,0,-29.8197	0/1:97:52,45:52:1863:45:1620:-52.0587,0,-109.628	0/1:75:39,36:39:1404:36:1275:-42.3932,0,-82.3452	0/0:18:18,0:18:648:0:0:0,-5.41854,-50.7859	0/1:42:21,21:21:756:21:756:-21.429,0,-37.5157	0/0:117:117,0:117:4200:0:0:0,-35.2205,-306.813	0/0:75:75,0:75:2700:0:0:0,-22.5772,-200.261	0/1:180:109,71:109:3920:71:2552:-77.2441,0,-236.153	0/0:51:51,0:51:1836:0:0:0,-15.3525,-143.359	0/1:13:4,9:4:144:9:324:-12.3991,0,-6.9677	0/0:60:60,0:60:2160:0:0:0,-18.0618,-141.744	0/1:11:5,6:5:176:6:216:-8.696,0,-10.4571	0/1:15:6,9:6:216:9:320:-10.1803,0,-10.0518	0/1:116:61,55:61:2196:55:1972:-50.8751,0,-118.913	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.7115	0/1:4:2,2:2:72:2:72:-2.94387,0,-4.73079	0/0:14:14,0:14:504:0:0:0,-4.21442,-38.3995	0/1:12:6,6:6:216:6:216:-5.79874,0,-11.9036	0/0:86:86,0:86:3096:0:0:0,-25.8886,-227.614	0/1:5:2,3:2:72:3:108:-4.06498,0,-4.15828	0/0:406:406,0:406:14510:0:0:0,-122.218,-1127.3	0/0:135:134,1:134:4807:1:36:0,-38.6497,-354.786	0/1:42:26,16:26:936:16:576:-13.3356,0,-53.1845	0/0:33:33,0:33:1184:0:0:0,-9.93399,-88.405	0/0:105:105,0:105:3768:0:0:0,-31.6081,-277.902	0/0:28:28,0:28:1000:0:0:0,-8.42884,-75.17	0/0:25:25,0:25:900:0:0:0,-7.52575,-62.8841	0/0:26:26,0:26:928:0:0:0,-7.82678,-61.1037	0/0:82:81,1:81:2916:1:36:0,-22.5013,-224.081	0/1:44:18,26:18:648:26:932:-34.3912,0,-35.1963	0/1:37:11,26:11:396:26:936:-31.9329,0,-14.9248	0/1:87:57,30:57:2052:30:1061:-22.248,0,-107.745	0/1:69:32,37:32:1137:37:1324:-35.9911,0,-58.3344	0/0:226:226,0:226:8120:0:0:0,-68.0328,-602.207	0/0:7:7,0:7:252:0:0:0,-2.10721,-16.951	0/0:150:149,1:149:5330:1:36:0,-43.3612,-352.098	0/1:19:10,9:10:360:9:316:-9.19331,0,-17.3344	0/0:76:76,0:76:2732:0:0:0,-22.8783,-192.442	0/0:52:52,0:52:1868:0:0:0,-15.6536,-122.08	0/0:76:75,1:75:2675:1:36:0,-19.3422,-196.65	0/1:112:61,51:61:2178:51:1836:-56.8198,0,-126.01	0/0:66:66,0:66:2367:0:0:0,-19.868,-175.382	0/1:93:56,37:56:2016:37:1328:-36.5628,0,-122.008	0/1:109:62,47:62:2209:47:1688:-51.7745,0,-131.894	0/1:57:26,31:26:936:31:1116:-32.964,0,-44.0422	0/0:63:63,0:63:2260:0:0:0,-18.9649,-148.86	0/0:58:58,0:58:2088:0:0:0,-17.4597,-135.938	0/1:32:19,13:19:684:13:468:-9.91372,0,-37.1241	0/1:74:40,34:40:1398:34:1215:-33.8994,0,-75.6039	0/1:79:27,52:27:972:52:1868:-71.9844,0,-48.949	0/0:173:173,0:173:6194:0:0:0,-52.0782,-456.973	0/0:83:83,0:83:2984:0:0:0,-24.9855,-221.464
chr06	5732321	.	CGAC	TGAG,CGAG	86026.5	PASS	AB=0.525854,0.468293;ABP=20.863,29.8624;AC=137,49;AF=0.736559,0.263441;AN=186;AO=4989,1450;CIGAR=1X2M1X,3M1X;DP=6466;DPB=6466;DPRA=70.2717,0.968541;EPP=10836.5,3151.65;EPPR=9.52472;GTI=10;LEN=4,1;MEANALT=1.82609,2.25926;MQM=29.9329,19.1186;MQMR=60;NS=93;NUMALT=2;ODDS=466.219;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=177484,52059;QR=108;RO=3;RPL=4989,1450;RPP=10836.5,3151.65;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10836.5,3151.65;SAR=4989,1450;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:17:0,10,7:0:0:10,7:360,252:-30.2472,-9.36977,-6.35947,-21.092,0,-18.9847	1/2:66:0,29,37:0:0:29,37:1025,1328:-107.087,-48.0364,-39.3065,-59.2735,0,-48.1353	1/2:37:0,14,21:0:0:14,21:496,756:-56.6826,-27.841,-23.6265,-28.8417,0,-22.5201	1/1:165:0,164,0:0:0:164,0:5821,0:-434.263,-49.3689,0,-434.263,-49.3689,-434.263	1/1:14:0,13,1:0:0:13,1:466,36:-33.2072,-3.91339,0,-30.4228,-0.790818,-30.1218	1/1:1:0,1,0:0:0:1,0:36,0:-2.6486,-0.30103,0,-2.6486,-0.30103,-2.6486	1/1:71:0,71,0:0:0:71,0:2538,0:-186.513,-21.3731,0,-186.513,-21.3731,-186.513	1/2:71:0,34,37:0:0:34,37:1210,1332:-119.692,-49.0222,-38.7871,-70.8939,0,-59.7558	1/2:37:0,21,16:0:0:21,16:747,576:-64.2884,-20.6469,-14.3253,-43.8553,0,-39.0388	1/2:165:0,100,65:0:0:100,65:3581,2336:-332.879,-96.0241,-65.9211,-237.091,0,-217.524	1/2:53:0,21,31:0:0:21,31:743,1116:-94.4377,-45.7499,-39.4283,-48.5886,0,-39.2566	1/1:69:0,69,0:0:0:69,0:2453,0:-163.234,-20.7711,0,-163.234,-20.7711,-163.234	1/2:75:0,47,28:0:0:47,28:1677,1004:-133.074,-36.9321,-22.7837,-96.3514,0,-87.9225	1/2:68:0,36,32:0:0:36,32:1288,1144:-120.647,-41.1379,-30.3009,-79.7332,0,-70.1003	1/1:70:0,70,0:0:0:70,0:2503,0:-183.483,-21.0721,0,-183.483,-21.0721,-183.483	1/2:48:0,22,26:0:0:22,26:786,936:-81.1268,-31.9981,-25.3754,-49.3588,0,-41.532	1/2:74:0,34,37:0:0:34,37:1212,1332:-119.492,-50.0235,-39.7884,-69.4829,0,-58.3448	1/1:64:0,64,0:0:0:64,0:2270,0:-149.113,-19.2659,0,-149.113,-19.2659,-149.113	1/1:42:0,42,0:0:0:42,0:1501,0:-99.0566,-12.6433,0,-99.0566,-12.6433,-99.0566	1/2:92:0,49,43:0:0:49,43:1738,1548:-178.179,-64.4865,-49.736,-113.934,0,-100.99	1/2:123:0,73,49:0:0:73,49:2591,1764:-216.13,-58.1282,-36.153,-157.977,0,-143.226	1/1:31:0,31,0:0:0:31,0:1084,0:-84.8209,-9.33193,0,-84.8209,-9.33193,-84.8209	1/2:32:0,13,19:0:0:13,19:449,684:-58.8397,-28.4969,-24.5836,-30.5972,0,-24.8777	1/2:91:0,47,44:0:0:47,44:1684,1576:-158.812,-55.2238,-41.0753,-103.812,0,-90.5662	1/2:15:0,9,5:0:0:9,5:324,180:-26.1852,-5.99159,-3.28232,-20.1032,0,-18.5981	1/1:161:0,157,4:0:0:157,4:5602,144:-436.822,-47.2617,0,-431.22,-41.4672,-430.016	1/1:93:0,92,0:0:0:92,0:3275,0:-231.054,-27.6948,0,-231.054,-27.6948,-231.054	1/1:45:0,45,0:0:0:45,0:1590,0:-113.77,-13.5464,0,-113.77,-13.5464,-113.77	1/2:121:0,61,60:0:0:61,60:2167,2148:-251.568,-100.693,-82.3301,-151.138,0,-133.076	1/2:74:0,34,39:0:0:34,39:1206,1385:-125.529,-49.9747,-39.7397,-75.4649,0,-63.7247	1/2:97:0,56,41:0:0:56,41:2000,1472:-193.788,-61.943,-45.0854,-132.086,0,-119.743	1/1:8:0,8,0:0:0:8,0:287,0:-20.5772,-2.40824,0,-20.5772,-2.40824,-20.5772	1/1:15:0,15,0:0:0:15,0:521,0:-37.2107,-4.51545,0,-37.2107,-4.51545,-37.2107	2/2:1:0,0,1:0:0:0,1:0,36:-1.79328,-1.79328,-1.79328,-0.30103,-0.30103,0	1/2:7:0,4,2:0:0:4,2:138,72:-10.8034,-2.55732,-1.3532,-8.20228,0,-7.60022	1/1:5:0,5,0:0:0:5,0:176,0:-12.1213,-1.50515,0,-12.1213,-1.50515,-12.1213	1/2:197:0,102,95:0:0:102,95:3631,3408:-411.367,-157.501,-126.796,-254.128,0,-225.53	1/1:75:0,74,0:0:0:74,0:2650,0:-186.452,-22.2762,0,-186.452,-22.2762,-186.452	1/2:53:0,24,29:0:0:24,29:857,1040:-88.0163,-38.245,-31.0203,-49.9968,0,-41.2669	.:.:.:.:.:.:.:.	1/1:103:0,103,0:0:0:103,0:3668,0:-259.575,-31.0061,0,-259.575,-31.0061,-259.575	1/1:40:0,39,0:0:0:39,0:1398,0:-98.1056,-11.7402,0,-98.1056,-11.7402,-98.1056	1/2:26:0,16,10:0:0:16,10:558,356:-46.6405,-12.404,-7.58754,-34.4448,0,-31.4345	1/2:97:0,52,44:0:0:52,44:1862,1580:-187.845,-64.8755,-49.222,-122.902,0,-109.657	1/2:75:0,39,36:0:0:39,36:1380,1292:-146.324,-54.2227,-42.4825,-92.3472,0,-81.5102	1/1:18:0,18,0:0:0:18,0:639,0:-50.4254,-5.41854,0,-50.4254,-5.41854,-50.4254	1/2:42:0,21,21:0:0:21,21:753,756:-71.3304,-27.7507,-21.429,-43.8013,0,-37.4797	1/1:119:0,119,0:0:0:119,0:4229,0:-310.94,-35.8226,0,-310.94,-35.8226,-310.94	1/1:79:0,79,0:0:0:79,0:2803,0:-207.36,-23.7814,0,-207.36,-23.7814,-207.36	1/2:180:0,112,68:0:0:112,68:3990,2448:-364.693,-102.104,-68.3888,-262.824,0,-242.354	1/1:52:0,52,0:0:0:52,0:1839,0:-143.848,-15.6536,0,-143.848,-15.6536,-143.848	1/2:13:0,4,9:0:0:4,9:144,324:-23.0154,-13.6033,-12.3991,-9.67697,0,-6.9677	1/1:60:0,60,0:0:0:60,0:2137,0:-141.358,-18.0618,0,-141.358,-18.0618,-141.358	1/2:11:0,5,6:0:0:5,6:167,216:-21.7551,-10.2011,-8.696,-11.8111,0,-10.0049	1/2:15:0,6,9:0:0:6,9:215,324:-24.5149,-11.9956,-10.1894,-12.7498,0,-10.0405	1/2:116:0,61,54:0:0:61,54:2154,1944:-200.443,-66.3089,-47.9461,-134.033,0,-117.777	1/1:5:0,5,0:0:0:5,0:179,0:-13.6874,-1.50515,0,-13.6874,-1.50515,-13.6874	1/2:4:0,2,2:0:0:2,2:72,72:-8.61344,-3.54593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chr06	5893328	.	T	A	85519	PASS	AB=0.481923;ABP=10.6254;AC=137;AF=0.728723;AN=188;AO=4121;CIGAR=1X;DP=5536;DPB=5536;DPRA=10.7027;EPP=8951.65;EPPR=3053.95;GTI=2;LEN=1;MEANALT=1.02198;MQM=59.8017;MQMR=59.9108;NS=94;NUMALT=1;ODDS=0.414422;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146220;QR=50528;RO=1413;RPL=4121;RPP=8951.65;RPPR=3053.95;RPR=0;RUN=1;SAF=4121;SAP=8951.65;SAR=0;SRF=1413;SRP=3071.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:14,13:14:500:13:464:-33.9697,0,-37.0173	0/1:71:41,30:41:1456:30:1072:-75.4193,0,-109.962	0/1:108:55,53:55:1964:53:1879:-136.876,0,-144.524	1/1:48:1,47:1:36:47:1659:-145.996,-10.8512,0	1/1:38:1,37:1:36:37:1284:-112.262,-7.84087,0	1/1:28:0,28:0:0:28:1004:-90.6697,-8.42884,0	1/1:59:0,58:0:0:58:2051:-184.495,-17.4597,0	0/1:63:28,35:28:1000:35:1244:-93.2998,0,-71.3489	0/1:53:22,31:22:784:31:1080:-81.4841,0,-54.9293	0/1:56:23,33:23:820:33:1184:-90.0106,0,-57.2648	0/1:23:8,15:8:288:15:524:-40.5577,0,-19.3437	1/1:55:0,55:0:0:55:1966:-177.213,-16.5567,0	0/1:53:32,21:32:1144:21:742:-51.149,0,-87.3149	0/1:54:24,30:24:864:30:1059:-79.3648,0,-61.8269	1/1:65:1,64:1:36:64:2283:-202.123,-15.9687,0	0/1:51:28,23:28:1004:23:828:-59.4916,0,-75.3233	0/1:45:22,23:22:784:23:802:-58.9518,0,-57.3376	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	1/1:25:0,25:0:0:25:880:-79.4718,-7.52575,0	0/1:116:61,55:61:2196:55:1936:-139.459,0,-162.986	0/1:98:55,43:55:1968:43:1525:-108.023,0,-147.817	1/1:72:0,72:0:0:72:2528:-227.765,-21.6742,0	0/1:38:26,12:26:928:12:424:-27.0573,0,-72.3991	0/1:36:21,15:21:756:15:531:-37.2848,0,-57.5301	0/1:23:8,15:8:288:15:540:-42.0128,0,-19.3437	1/1:220:0,220:0:0:220:7845:-705.916,-66.2266,0	1/1:149:0,149:0:0:149:5280:-475.186,-44.8535,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:203:114,89:114:4092:89:3165:-223.965,0,-307.25	0/1:36:20,16:20:711:16:576:-40.5874,0,-53.4786	0/1:58:30,28:30:1063:28:1004:-73.2111,0,-78.5211	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:19:0,19:0:0:19:680:-61.523,-5.71957,0	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:15:0,15:0:0:15:520:-47.127,-4.51545,0	0/1:162:86,76:86:3073:76:2708:-195.195,0,-228.03	1/1:114:0,114:0:0:114:4041:-363.88,-34.3174,0	0/1:42:19,23:19:680:23:812:-60.7577,0,-48.8859	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:36:0,36:0:0:36:1288:-116.219,-10.8371,0	0/1:90:50,39:50:1796:39:1369:-96.2255,0,-134.771	0/1:75:41,34:41:1464:34:1212:-86.6792,0,-109.478	0/1:44:18,26:18:648:26:924:-70.2242,0,-45.4066	1/1:40:0,40:0:0:40:1428:-128.817,-12.0412,0	0/1:86:43,43:43:1539:43:1528:-111.925,0,-112.914	1/1:91:0,91:0:0:91:3240:-291.823,-27.3937,0	1/1:51:0,51:0:0:51:1824:-164.427,-15.3525,0	0/1:126:62,64:62:2220:64:2260:-165.724,0,-162.132	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:70:0,70:0:0:70:2496:-224.787,-21.0721,0	0/1:12:8,4:8:284:4:140:-9.33222,0,-22.291	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:82:42,40:42:1508:40:1424:-103.773,0,-111.328	1/1:16:0,16:0:0:16:557:-50.4556,-4.81648,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:7:0,7:0:0:7:252:-23.0266,-2.10721,0	0/1:28:17,11:17:600:11:396:-27.5539,0,-45.9004	1/1:93:3,90:3:108:90:3185:-276.657,-17.9206,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:116:0,116:0:0:116:4129:-371.637,-34.9195,0	1/1:70:0,70:0:0:70:2459:-221.553,-21.0721,0	0/1:27:15,12:15:536:12:432:-31.0934,0,-40.447	1/1:58:0,58:0:0:58:2084:-187.815,-17.4597,0	1/1:117:0,117:0:0:117:4126:-371.248,-35.2205,0	1/1:44:0,44:0:0:44:1557:-140.416,-13.2453,0	1/1:21:0,21:0:0:21:731:-66.1104,-6.32163,0	1/1:42:0,42:0:0:42:1504:-135.568,-12.6433,0	1/1:68:0,68:0:0:68:2399:-216.168,-20.47,0	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:45:24,21:24:856:21:736:-53.0149,0,-63.8148	0/1:54:22,32:22:776:32:1140:-86.4366,0,-53.9065	0/1:73:37,36:37:1324:36:1284:-93.882,0,-97.4869	1/1:105:0,105:0:0:105:3728:-335.708,-31.6082,0	1/1:67:0,67:0:0:67:2367:-213.278,-20.169,0	1/1:74:0,74:0:0:74:2636:-237.382,-22.2762,0	0/1:5:1,4:1:36:4:136:-11.0704,0,-2.09312	1/1:89:0,89:0:0:89:3180:-286.165,-26.7917,0	1/1:89:0,89:0:0:89:3160:-284.616,-26.7917,0	1/1:89:0,89:0:0:89:3172:-285.705,-26.7917,0	0/1:92:51,41:51:1803:41:1449:-103.002,0,-134.855	1/1:53:0,53:0:0:53:1880:-169.468,-15.9546,0	0/1:83:44,39:44:1576:39:1376:-99.1504,0,-117.146	0/1:146:72,74:72:2579:74:2579:-188.411,0,-188.322	0/1:37:17,20:17:608:20:701:-52.1672,0,-43.9139	1/1:60:0,60:0:0:60:2129:-191.877,-18.0618,0	1/1:71:0,71:0:0:71:2544:-229.099,-21.3731,0	0/1:22:10,12:10:360:12:424:-31.8738,0,-26.1216	0/1:66:32,34:32:1144:34:1216:-89.8786,0,-83.3284	0/1:56:40,16:40:1436:16:555:-33.4176,0,-112.68	1/1:74:0,74:0:0:74:2624:-236.405,-22.2762,0	1/1:80:1,79:1:36:79:2801:-248.732,-20.4841,0
chr06	5930217	.	G	A	55762.4	PASS	AB=0.611306;ABP=555.049;AC=49;AF=0.260638;AN=188;AO=3156;CIGAR=1X;DP=8704;DPB=8704;DPRA=1.46898;EPP=6838.82;EPPR=11468.5;GTI=3;LEN=1;MEANALT=1.07937;MQM=53.7655;MQMR=57.9158;NS=94;NUMALT=1;ODDS=0.374901;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112821;QR=197643;RO=5537;RPL=3149;RPP=6795.51;RPPR=11468.5;RPR=7;RUN=1;SAF=3151;SAP=6812.82;SAR=5;SRF=5537;SRP=12026.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:16,45:16:572:45:1571:-122.742,0,-33.3209	0/1:119:42,77:42:1508:77:2757:-211.233,0,-100.126	0/1:89:40,49:40:1432:49:1758:-130.892,0,-102.051	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.335	0/0:37:37,0:37:1283:0:0:0,-11.1381,-114.712	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.459	0/0:108:105,2:105:3723:2:72:0,-25.6382,-328.426	0/1:120:38,82:38:1364:82:2916:-224.85,0,-86.7849	0/1:107:37,70:37:1317:70:2492:-191.724,0,-86.4383	0/1:91:25,63:25:900:63:2260:-176.415,0,-52.5969	0/1:185:99,86:99:3544:86:3086:-220.917,0,-262.915	0/0:99:99,0:99:3560:0:0:0,-29.802,-319.712	0/1:113:66,47:66:2368:47:1673:-116.409,0,-179.116	0/1:164:78,86:78:2788:86:3092:-228.16,0,-201.403	0/0:99:98,1:98:3505:1:36:0,-26.2155,-311.63	0/1:84:52,32:52:1864:32:1152:-78.3855,0,-142.447	0/1:163:83,80:83:2965:80:2872:-208.589,0,-217.534	0/0:76:76,0:76:2728:0:0:0,-22.8783,-244.164	0/0:106:106,0:106:3816:0:0:0,-31.9092,-342.39	0/1:252:42,208:42:1474:208:7449:-593.917,0,-57.0489	0/1:130:36,94:36:1265:94:3350:-261.248,0,-74.9544	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.2714	0/1:90:16,74:16:572:74:2656:-211.805,0,-24.6899	0/1:102:21,81:21:741:81:2916:-230.948,0,-36.2538	0/1:78:23,55:23:824:55:1976:-154.342,0,-50.8664	0/0:137:137,0:137:4893:0:0:0,-41.2411,-440.392	0/0:162:162,0:162:5691:0:0:0,-48.7669,-511.687	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.964	0/1:170:50,120:50:1773:120:4286:-334.516,0,-108.496	0/1:71:11,60:11:392:60:2146:-171.67,0,-14.2469	0/1:114:43,71:43:1502:71:2533:-193.431,0,-101.08	0/0:12:12,0:12:417:0:0:0,-3.61236,-36.1338	0/0:29:29,0:29:1044:0:0:0,-8.72987,-92.7716	0/1:7:4,3:4:144:3:108:-7.94263,0,-11.2001	0/1:7:4,3:4:144:3:108:-7.94263,0,-11.2001	0/0:17:17,0:17:597:0:0:0,-5.11751,-53.8043	0/1:264:130,134:130:4648:134:4803:-352.465,0,-338.535	0/0:59:58,0:58:2076:0:0:0,-17.4597,-186.698	0/1:137:70,67:70:2516:67:2380:-171.627,0,-184.688	0/1:8:2,6:2:72:6:216:-17.3506,0,-4.42848	0/0:76:76,0:76:2705:0:0:0,-22.8783,-240.276	0/0:55:55,0:55:1957:0:0:0,-16.5566,-175.868	0/1:124:45,78:45:1593:78:2785:-212.674,0,-106.08	0/1:154:69,85:69:2469:85:3043:-227.456,0,-175.91	0/1:75:25,50:25:900:50:1800:-139.552,0,-58.7153	0/0:62:61,1:61:2173:1:36:0,-15.0656,-192.028	0/1:125:15,110:15:521:110:3924:-314.513,0,-9.56675	0/0:105:105,0:105:3719:0:0:0,-31.6081,-334.166	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.154	0/1:100:32,68:32:1133:68:2444:-189.849,0,-72.1045	0/0:73:73,0:73:2613:0:0:0,-21.9752,-234.697	0/1:9:2,7:2:72:7:252:-20.3031,0,-4.09756	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.029	0/1:36:13,23:13:468:23:828:-63.8726,0,-31.6226	0/1:11:3,8:3:108:8:288:-22.89,0,-6.75905	0/1:88:38,50:38:1368:50:1785:-134.189,0,-96.8381	0/0:50:50,0:50:1766:0:0:0,-15.0515,-158.806	0/1:8:6,2:6:216:2:72:-4.42657,0,-17.3823	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.6551	0/1:102:35,67:35:1252:67:2397:-184.501,0,-82.2469	0/0:182:181,1:181:6485:1:36:0,-51.1918,-578.206	0/1:6:3,3:3:108:3:108:-8.26172,0,-8.26899	0/0:44:44,0:44:1576:0:0:0,-13.2453,-141.792	0/0:114:113,1:113:4030:1:36:0,-30.7217,-358.826	0/1:110:40,67:40:1440:67:2364:-179.916,0,-95.4372	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.931	0/0:66:62,4:62:2190:4:144:0,-6.56396,-182.314	0/0:40:39,1:39:1377:1:36:0,-8.44552,-120.502	0/0:100:98,2:98:3509:2:72:0,-23.276,-308.887	0/0:57:57,0:57:2018:0:0:0,-17.1587,-181.73	0/0:210:209,1:209:7481:1:36:0,-59.619,-668.668	0/1:25:7,18:7:252:18:648:-51.078,0,-15.5016	0/1:87:23,64:23:820:64:2266:-176.33,0,-47.8864	0/1:71:29,42:29:1040:42:1512:-114.129,0,-72.3014	0/1:226:67,159:67:2385:159:5699:-443.393,0,-146.756	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.368	0/0:69:68,1:68:2444:1:21:0,-18.6714,-217.705	0/0:73:72,1:72:2558:1:36:0,-18.386,-226.567	0/1:10:6,4:6:216:4:144:-10.2698,0,-16.7708	0/0:93:91,2:91:3264:2:72:0,-21.1688,-286.624	0/0:64:64,0:64:2245:0:0:0,-19.2659,-201.379	0/0:112:112,0:112:4005:0:0:0,-33.7154,-360.324	0/1:130:63,67:63:2249:67:2393:-176.034,0,-163.323	0/0:87:87,0:87:3120:0:0:0,-26.1896,-280.665	0/1:126:65,61:65:2336:61:2175:-157.721,0,-172.469	0/1:236:113,123:113:4053:123:4386:-323.277,0,-293.209	0/1:54:26,28:26:928:28:1004:-74.1441,0,-65.4702	0/0:109:109,0:109:3890:0:0:0,-32.8123,-349.51	0/0:97:96,1:96:3441:1:21:0,-27.1084,-307.102	0/1:144:66,78:66:2361:78:2785:-206.905,0,-168.412	0/1:233:129,104:129:4592:104:3744:-265.589,0,-342.215	0/1:114:37,77:37:1332:77:2729:-211.012,0,-85.8366	0/0:77:76,1:76:2712:1:36:0,-19.5836,-237.867	0/0:153:153,0:153:5465:0:0:0,-46.0576,-491.816
chr06	5930222	.	T	C	110438	PASS	AB=0.385057;ABP=582.07;AC=139;AF=0.739362;AN=188;AO=5418;CIGAR=1X;DP=8544;DPB=8544;DPRA=0;EPP=10915.5;EPPR=6745.48;GTI=4;LEN=1;MEANALT=1.05319;MQM=57.9677;MQMR=53.8113;NS=94;NUMALT=1;ODDS=0.529791;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191685;QR=110931;RO=3121;RPL=100;RPP=10915.5;RPPR=6702.23;RPR=5318;RUN=1;SAF=5418;SAP=11768;SAR=0;SRF=3116;SRP=6736.82;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:42,15:42:1500:15:531:-30.8049,0,-117.524	0/1:117:75,42:75:2680:42:1495:-99.3724,0,-205.138	0/1:86:46,40:46:1635:40:1416:-101.628,0,-120.832	1/1:87:0,87:0:0:87:3120:-280.834,-26.1896,0	1/1:36:0,36:0:0:36:1255:-112.527,-10.8371,0	1/1:44:0,44:0:0:44:1555:-140.113,-13.2453,0	1/1:108:2,106:2:72:106:3777:-333.234,-25.6794,0	0/1:116:79,37:79:2790:37:1324:-84.4207,0,-214.517	0/1:106:69,37:69:2462:37:1289:-84.2762,0,-188.904	0/1:88:63,25:63:2260:25:875:-51.6902,0,-176.77	0/1:179:83,96:83:2923:96:3355:-247.638,0,-208.075	1/1:100:0,100:0:0:100:3545:-318.401,-30.103,0	0/1:112:47,65:47:1649:65:2317:-174.93,0,-114.626	0/1:158:85,73:85:3044:73:2571:-183.798,0,-225.659	1/1:98:0,98:0:0:98:3500:-314.809,-29.5009,0	0/1:83:32,51:32:1152:51:1805:-137.658,0,-78.6865	0/1:164:81,82:81:2847:82:2902:-211.568,0,-206.026	1/1:76:0,76:0:0:76:2677:-239.924,-22.8783,0	1/1:104:0,104:0:0:104:3648:-327.335,-31.3071,0	0/1:247:207,40:207:7389:40:1411:-52.5379,0,-589.471	0/1:130:95,35:95:3354:35:1229:-71.7075,0,-261.145	1/1:23:0,23:0:0:23:805:-72.3781,-6.92369,0	0/1:86:70,16:70:2512:16:572:-25.894,0,-200.059	0/1:100:80,20:80:2816:20:716:-34.6119,0,-222.585	0/1:74:52,22:52:1872:22:775:-47.6974,0,-146.22	1/1:134:0,134:0:0:134:4760:-428.45,-40.338,0	1/1:158:0,158:0:0:158:5596:-503.085,-47.5627,0	1/1:60:0,60:0:0:60:2148:-193.492,-18.0618,0	0/1:168:117,51:117:4183:51:1816:-113.001,0,-325.843	0/1:72:63,9:63:2214:9:324:-7.8317,0,-177.559	0/1:110:69,41:69:2444:41:1463:-98.7946,0,-186.716	1/1:11:0,11:0:0:11:375:-33.3519,-3.31133,0	1/1:28:0,28:0:0:28:986:-88.6312,-8.42884,0	0/1:7:3,4:3:108:4:144:-11.2001,0,-7.94263	0/1:6:2,4:2:72:4:144:-11.5011,0,-5.01335	1/1:16:0,16:0:0:16:567:-51.1057,-4.81648,0	0/1:260:132,128:132:4705:128:4548:-330.709,0,-344.822	1/1:56:0,56:0:0:56:1956:-176.272,-16.8577,0	0/1:131:63,68:63:2239:68:2400:-176.071,0,-160.965	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3506	1/1:75:0,75:0:0:75:2632:-235.302,-22.5773,0	1/1:54:0,54:0:0:54:1922:-172.718,-16.2556,0	0/1:121:76,45:76:2698:45:1599:-107.61,0,-206.114	0/1:152:85,67:85:3024:67:2383:-168.915,0,-226.271	0/1:76:51,25:51:1820:25:891:-57.6021,0,-141.06	1/1:59:1,58:1:36:58:2064:-182.331,-14.1625,0	0/1:125:110,15:110:3924:15:528:-10.2021,0,-314.571	1/1:101:0,101:0:0:101:3535:-318.167,-30.404,0	1/1:48:0,48:0:0:48:1712:-154.237,-14.4494,0	0/1:94:67,27:67:2391:27:947:-57.1786,0,-186.899	1/1:71:0,71:0:0:71:2514:-226.172,-21.3731,0	0/1:9:7,2:7:252:2:68:-3.73625,0,-20.3031	1/1:65:0,65:0:0:65:2319:-208.303,-19.567,0	0/1:36:23,13:23:820:13:468:-31.6226,0,-63.1521	0/1:11:8,3:8:288:3:108:-6.75905,0,-22.89	0/1:90:52,38:52:1842:38:1340:-93.7219,0,-138.472	1/1:47:0,47:0:0:47:1656:-148.973,-14.1484,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42657	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	0/1:100:67,33:67:2377:33:1180:-76.392,0,-183.325	1/1:180:2,178:2:72:178:6294:-558.745,-47.3511,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26172	1/1:42:0,42:0:0:42:1500:-135.128,-12.6433,0	1/1:110:1,109:1:36:109:3851:-342.889,-29.5176,0	0/1:111:70,40:70:2491:40:1399:-92.5756,0,-190.324	1/1:42:0,42:0:0:42:1491:-134.453,-12.6433,0	1/1:62:4,58:4:144:58:2062:-172.129,-5.35985,0	1/1:40:1,39:1:36:39:1367:-119.598,-8.44552,0	1/1:103:2,101:2:72:101:3555:-312.972,-24.1791,0	1/1:55:0,54:0:0:54:1931:-173.551,-16.2556,0	1/1:202:1,201:1:36:201:7143:-638.452,-57.2108,0	0/1:25:18,7:18:631:7:248:-15.1369,0,-49.5467	0/1:86:63,23:63:2252:23:816:-47.8248,0,-174.843	0/1:70:42,28:42:1504:28:993:-68.4973,0,-113.726	0/1:220:153,67:153:5438:67:2360:-145.827,0,-421.851	1/1:71:0,71:0:0:71:2527:-227.565,-21.3731,0	1/1:69:1,67:1:36:67:2350:-207.861,-17.2382,0	1/1:76:1,75:1:36:75:2639:-233.964,-19.2891,0	0/1:10:4,6:4:144:6:212:-16.406,0,-10.2698	1/1:90:2,88:2:72:88:3116:-273.504,-20.2657,0	1/1:60:0,60:0:0:60:2096:-188.349,-18.0618,0	1/1:111:0,110:0:0:110:3897:-349.159,-33.1133,0	0/1:128:67,61:67:2377:61:2153:-155.43,0,-175.194	1/1:86:0,86:0:0:86:3066:-275.893,-25.8886,0	0/1:126:59,67:59:2076:67:2358:-174.48,0,-148.908	0/1:235:124,111:124:4396:111:3912:-281.026,0,-324.503	0/1:53:30,23:30:1056:23:813:-56.0021,0,-78.9351	1/1:105:0,105:0:0:105:3708:-333.302,-31.6082,0	1/1:95:1,94:1:32:94:3347:-297.686,-25.4951,0	0/1:141:78,63:78:2755:63:2207:-156.01,0,-205.098	0/1:234:104,130:104:3686:130:4573:-340.69,0,-260.165	0/1:114:77,37:77:2727:37:1299:-82.8878,0,-210.609	1/1:74:1,73:1:36:73:2587:-226.326,-18.6805,0	1/1:151:0,151:0:0:151:5334:-480.014,-45.4555,0
chr06	5943515	.	G	C	135473	PASS	AB=0.539928;ABP=53.1246;AC=139;AF=0.739362;AN=188;AO=6361;CIGAR=1X;DP=8043;DPB=8043;DPRA=14.4032;EPP=13763.7;EPPR=3612.08;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.9917;MQMR=59.9928;NS=94;NUMALT=1;ODDS=3.29315;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227013;QR=59725;RO=1678;RPL=6;RPP=13763.7;RPPR=3612.08;RPR=6355;RUN=1;SAF=6361;SAP=13815.7;SAR=0;SRF=1678;SRP=3646.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:14,7:14:485:7:252:-16.7073,0,-37.6553	0/1:121:59,62:59:2120:62:2208:-162.561,0,-154.644	0/1:91:41,50:41:1464:50:1775:-132.639,0,-104.662	1/1:138:0,138:0:0:138:4919:-442.863,-41.5421,0	1/1:79:1,78:1:36:78:2804:-249.001,-20.1831,0	1/1:48:0,48:0:0:48:1709:-154.095,-14.4494,0	1/1:120:0,120:0:0:120:4299:-387.086,-36.1236,0	0/1:133:54,79:54:1914:79:2806:-212.743,0,-132.496	0/1:43:24,19:24:860:19:684:-48.946,0,-64.7775	0/1:87:55,32:55:1953:32:1135:-76.1821,0,-149.852	0/1:67:33,34:33:1184:34:1211:-89.1265,0,-86.6993	1/1:73:0,73:0:0:73:2600:-234.248,-21.9752,0	0/1:58:25,33:25:896:33:1184:-89.4086,0,-63.5006	0/1:114:58,56:58:2076:56:1961:-142.446,0,-152.793	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0	0/1:67:36,31:36:1283:31:1116:-80.5827,0,-95.6036	0/1:77:31,46:31:1116:46:1644:-125.069,0,-77.5724	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:88:51,37:51:1832:37:1328:-93.3316,0,-138.67	0/1:122:64,58:64:2270:58:2058:-148.764,0,-167.833	1/1:102:0,102:0:0:102:3638:-327.624,-30.7051,0	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/1:67:27,40:27:953:40:1423:-108.198,0,-65.9143	0/1:40:18,22:18:648:22:784:-58.8427,0,-46.6107	1/1:300:0,300:0:0:300:10684:-961.47,-90.309,0	1/1:144:0,144:0:0:144:5142:-462.922,-43.3483,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:180:89,91:89:3170:91:3264:-239.795,0,-231.336	0/1:195:81,114:81:2869:114:4074:-308.146,0,-199.744	0/1:104:48,56:48:1697:56:1994:-148.424,0,-121.707	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:192:84,108:84:3016:108:3858:-289.617,0,-213.873	1/1:303:0,303:0:0:303:10842:-975.681,-91.2121,0	0/1:82:34,48:34:1209:48:1716:-130.041,0,-84.4297	0/1:7:4,3:4:129:3:108:-7.96796,0,-9.82045	1/1:116:0,116:0:0:116:4144:-373.144,-34.9195,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:100:36,64:36:1288:64:2270:-174.459,0,-86.1206	0/1:43:24,19:24:845:19:665:-47.2285,0,-63.4228	0/1:53:18,35:18:644:35:1239:-95.8591,0,-42.336	1/1:86:0,86:0:0:86:3075:-276.978,-25.8886,0	0/1:61:15,46:15:521:46:1652:-130.606,0,-28.8535	1/1:223:0,223:0:0:223:7930:-713.727,-67.1297,0	1/1:83:0,82:0:0:82:2906:-261.416,-24.6845,0	0/1:177:84,93:84:2988:93:3293:-243.308,0,-215.868	1/1:114:0,114:0:0:114:4075:-366.936,-34.3174,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:118:0,118:0:0:118:4214:-379.44,-35.5215,0	0/1:45:27,18:27:968:18:648:-45.1055,0,-73.891	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/1:125:55,70:55:1968:70:2488:-186.543,0,-139.766	1/1:29:2,27:2:68:27:968:-80.9797,-2.27216,0	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:70:20,50:20:712:50:1796:-140.85,0,-43.3346	1/1:149:1,148:1:36:148:5271:-470.928,-41.2552,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:177:0,177:0:0:177:6352:-571.769,-53.2823,0	1/1:206:3,203:3:108:203:7269:-644.186,-51.937,0	0/1:78:36,42:36:1292:42:1496:-111.454,0,-93.1034	1/1:95:0,95:0:0:95:3408:-306.934,-28.5979,0	1/1:97:2,95:2:72:95:3396:-299.019,-22.3632,0	1/1:105:0,105:0:0:105:3772:-339.678,-31.6082,0	1/1:38:0,38:0:0:38:1347:-121.529,-11.4391,0	1/1:62:0,62:0:0:62:2194:-197.725,-18.6639,0	1/1:111:0,111:0:0:111:3951:-355.782,-33.4143,0	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:101:49,52:49:1671:52:1872:-138.355,0,-120.263	0/1:53:26,27:26:932:27:959:-70.6708,0,-68.2443	0/1:111:30,81:30:1076:81:2879:-225.932,0,-63.7385	1/1:143:0,142:0:0:142:5070:-456.224,-42.7463,0	1/1:142:0,142:0:0:142:5069:-456.354,-42.7463,0	1/1:126:0,126:0:0:126:4500:-405.167,-37.9298,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:89:0,89:0:0:89:3163:-284.892,-26.7917,0	1/1:79:0,79:0:0:79:2812:-253.318,-23.7814,0	1/1:169:0,169:0:0:169:6025:-542.353,-50.8741,0	0/1:102:49,53:49:1733:53:1883:-139.043,0,-125.548	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	0/1:62:33,29:33:1150:29:1023:-73.7179,0,-85.1381	0/1:134:63,71:63:2256:71:2532:-187.794,0,-162.965	0/1:32:16,16:16:568:16:564:-41.4573,0,-41.8189	1/1:76:0,76:0:0:76:2705:-243.693,-22.8783,0	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	0/1:49:25,23:25:888:23:824:-59.6741,0,-65.4299	0/1:128:55,72:55:1980:72:2576:-193.499,0,-139.884	0/1:47:30,17:30:1072:17:608:-40.9036,0,-82.644	1/1:53:0,53:0:0:53:1891:-170.468,-15.9546,0	1/1:83:0,83:0:0:83:2967:-267.257,-24.9855,0
chr06	5953613	.	A	G	17148.4	PASS	AB=0.596971;ABP=143.25;AC=49;AF=0.263441;AN=186;AO=1039;CIGAR=1X;DP=3280;DPB=3280;DPRA=1.21777;EPP=2259.17;EPPR=4849.74;GTI=3;LEN=1;MEANALT=1.03774;MQM=59.9644;MQMR=59.9919;NS=93;NUMALT=1;ODDS=0.772483;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36207;QR=74640;RO=2236;RPL=1039;RPP=2259.17;RPPR=4858.42;RPR=0;RUN=1;SAF=1039;SAP=2259.17;SAR=0;SRF=2235;SRP=4849.74;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:10,2:10:321:2:72:-3.22436,0,-25.5899	0/1:23:9,14:9:297:14:500:-38.4125,0,-20.1265	0/1:56:22,34:22:732:34:1177:-89.3743,0,-49.3288	0/0:99:99,0:99:3331:0:0:0,-29.802,-300.021	0/0:26:26,0:26:868:0:0:0,-7.82678,-78.4263	0/0:13:13,0:13:433:0:0:0,-3.91339,-39.2887	0/0:33:31,0:31:1038:0:0:0,-9.33193,-93.4186	0/1:39:21,18:21:690:18:644:-46.5504,0,-50.6669	0/1:33:14,19:14:469:19:670:-50.6916,0,-32.5951	0/1:14:7,7:7:239:7:252:-18.8145,0,-17.6283	0/1:35:10,25:10:339:25:818:-63.3844,0,-20.3015	0/0:61:61,0:61:2006:0:0:0,-18.3628,-180.808	0/1:46:20,26:20:665:26:906:-68.0061,0,-46.3146	0/1:35:11,24:11:361:24:839:-65.2912,0,-22.2709	0/0:34:33,1:33:1111:1:32:0,-7.03571,-97.0903	0/1:36:15,21:15:520:21:729:-55.0918,0,-36.2908	0/1:24:8,16:8:259:16:568:-44.2271,0,-16.4025	0/0:9:9,0:9:303:0:0:0,-2.70927,-27.5967	0/0:21:21,0:21:685:0:0:0,-6.32163,-61.9578	0/1:96:34,62:34:1115:62:2176:-167.206,0,-71.7451	0/1:56:23,33:23:766:33:1162:-88.0285,0,-52.3898	0/0:18:18,0:18:583:0:0:0,-5.41854,-52.7775	0/1:45:20,25:20:692:25:892:-67.0524,0,-49.055	0/1:21:13,7:13:422:7:248:-16.2845,0,-31.9157	0/1:23:8,15:8:284:15:521:-40.2926,0,-18.9797	0/0:59:59,0:59:1992:0:0:0,-17.7608,-179.551	0/0:76:74,2:74:2497:2:58:0,-17.37,-219.478	0/0:19:19,0:19:647:0:0:0,-5.71957,-58.5488	0/1:97:40,57:40:1342:57:2006:-151.611,0,-91.8718	0/1:43:18,25:18:574:25:883:-66.835,0,-39.0196	0/1:26:12,14:12:406:14:496:-37.1475,0,-29.0374	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:6:6,0:6:204:0:0:0,-1.80618,-18.6934	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:4:4,0:4:132:0:0:0,-1.20412,-12.2065	0/1:126:58,68:58:1927:68:2348:-173.647,0,-135.773	0/0:42:42,0:42:1403:0:0:0,-12.6433,-126.56	0/1:31:11,20:11:352:20:704:-54.3526,0,-22.6582	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:100:100,0:100:3252:0:0:0,-30.103,-292.914	0/0:13:13,0:13:438:0:0:0,-3.91339,-39.7421	0/1:60:27,33:27:936:33:1151:-85.8335,0,-66.4912	0/1:36:21,15:21:705:15:508:-35.2029,0,-52.9256	0/1:31:11,20:11:366:20:696:-53.6243,0,-23.9291	0/0:27:27,0:27:923:0:0:0,-8.12781,-83.3805	0/1:39:15,24:15:511:24:828:-63.0931,0,-34.5731	0/0:53:53,0:53:1782:0:0:0,-15.9546,-160.659	0/0:27:27,0:27:896:0:0:0,-8.12781,-80.9446	0/1:58:17,41:17:574:41:1472:-115.316,0,-34.5188	0/0:58:57,1:57:1918:1:21:0,-15.3598,-170.795	.:.:.:.:.:.:.:.	0/0:31:31,0:31:1037:0:0:0,-9.33193,-93.6325	0/1:26:7,19:7:240:19:652:-51.1715,0,-14.1079	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:36:11,25:11:357:25:866:-67.4158,0,-21.6072	0/0:12:12,0:12:401:0:0:0,-3.61236,-36.4104	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:3:3,0:3:95:0:0:0,-0.90309,-8.86421	0/1:38:12,26:12:403:26:924:-72.0385,0,-25.154	0/0:49:49,0:49:1657:0:0:0,-14.7505,-149.412	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:47:47,0:47:1595:0:0:0,-14.1484,-143.835	0/0:37:35,2:35:1175:2:72:0,-4.30139,-99.2109	0/1:15:5,10:5:150:10:347:-27.0482,0,-9.28225	0/0:48:48,0:48:1599:0:0:0,-14.4494,-144.192	0/0:28:28,0:28:950:0:0:0,-8.42884,-85.8077	0/0:36:34,1:34:1096:1:36:0,-7.23768,-95.3929	0/0:29:29,0:29:979:0:0:0,-8.72987,-88.4169	0/0:10:10,0:10:334:0:0:0,-3.0103,-30.3829	0/0:14:14,0:14:475:0:0:0,-4.21442,-43.0735	0/1:7:2,5:2:72:5:165:-13.0663,0,-4.72951	0/1:45:20,25:20:660:25:872:-65.2481,0,-46.1638	0/1:16:11,5:11:365:5:180:-11.7356,0,-28.3534	0/1:51:19,32:19:657:32:1112:-85.0315,0,-44.0979	0/0:61:60,1:60:2001:1:36:0,-14.7646,-176.761	0/0:34:34,0:34:1109:0:0:0,-10.235,-100.105	0/0:28:28,0:28:941:0:0:0,-8.42884,-84.9959	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:32:31,0:31:1074:0:0:0,-9.33193,-96.7135	0/0:22:22,0:22:726:0:0:0,-6.62266,-65.6493	0/0:40:40,0:40:1344:0:0:0,-12.0412,-121.253	0/1:37:17,20:17:555:20:694:-51.6423,0,-39.1214	0/0:32:32,0:32:1070:0:0:0,-9.63296,-96.5993	0/1:31:14,17:14:452:17:581:-43.2785,0,-31.6583	0/1:77:30,47:30:990:47:1614:-122.365,0,-66.2208	0/1:16:3,13:3:104:13:449:-35.921,0,-4.88633	0/0:39:39,0:39:1251:0:0:0,-11.7402,-112.873	0/0:47:47,0:47:1581:0:0:0,-14.1484,-142.574	0/1:34:17,17:17:562:17:600:-44.0942,0,-40.6565	0/1:78:34,44:34:1164:44:1471:-109.193,0,-81.5801	0/1:52:9,43:9:306:43:1511:-120.629,0,-12.215	0/0:17:17,0:17:565:0:0:0,-5.11751,-51.1646	0/0:55:55,0:55:1790:0:0:0,-16.5566,-161.374
chr06	5990476	.	A	G	136713	PASS	AB=0.492017;ABP=5.29838;AC=137;AF=0.736559;AN=186;AO=6431;CIGAR=1X;DP=8548;DPB=8548;DPRA=92.9022;EPP=13794.6;EPPR=4406.4;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.9664;MQMR=59.8588;NS=93;NUMALT=1;ODDS=0.0282963;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229831;QR=75721;RO=2111;RPL=6422;RPP=13889.7;RPPR=4423.44;RPR=9;RUN=1;SAF=11;SAP=13872.4;SAR=6420;SRF=2;SRP=4569.63;SRR=2109;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:130:66,64:66:2368:64:2304:-168.487,0,-174.222	0/1:92:44,48:44:1575:48:1699:-125.501,0,-114.346	1/1:124:0,124:0:0:124:4440:-399.771,-37.3277,0	1/1:35:1,34:1:36:34:1220:-106.422,-6.93778,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:120:1,119:1:36:119:4244:-378.526,-32.5253,0	0/1:156:53,102:53:1900:102:3625:-279.434,0,-124.258	0/1:96:43,53:43:1544:53:1904:-142.739,0,-110.354	0/1:113:63,49:63:2264:49:1760:-124.609,0,-169.93	0/1:58:28,30:28:1004:30:1055:-77.8003,0,-73.2161	1/1:65:0,65:0:0:65:2325:-209.508,-19.567,0	0/1:55:28,27:28:1008:27:959:-70.0687,0,-74.4797	0/1:55:19,36:19:684:36:1287:-99.5761,0,-45.3337	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	0/1:55:30,25:30:1080:25:900:-64.7644,0,-80.9566	0/1:57:27,30:27:968:30:1080:-80.3545,0,-70.2787	1/1:68:0,68:0:0:68:2439:-219.764,-20.47,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:169:85,84:85:3044:84:3016:-220.783,0,-222.52	0/1:199:107,92:107:3827:92:3278:-235.335,0,-284.721	1/1:62:0,62:0:0:62:2203:-198.535,-18.6639,0	0/1:91:41,50:41:1476:50:1780:-133.089,0,-105.742	0/1:172:82,90:82:2948:90:3224:-238.604,0,-213.776	0/1:62:35,27:35:1260:27:968:-68.7735,0,-95.0416	1/1:326:0,326:0:0:326:11621:-1045.76,-98.1358,0	1/1:189:0,188:0:0:188:6715:-604.107,-56.5936,0	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	0/1:219:119,100:119:4267:100:3577:-256.193,0,-318.246	0/1:193:92,101:92:3292:101:3624:-268.266,0,-238.401	0/1:100:56,44:56:2003:44:1576:-112.029,0,-150.44	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:198:104,94:104:3732:94:3355:-242.563,0,-276.423	1/1:191:1,190:1:36:190:6794:-607.707,-53.8985,0	0/1:48:20,28:20:720:28:990:-74.9632,0,-50.6687	.:.:.:.:.:.:.:.	1/1:129:0,129:0:0:129:4573:-411.735,-38.8329,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:60:28,32:28:1004:32:1125:-83.4936,0,-72.6141	0/1:89:41,48:41:1476:48:1724:-128.654,0,-106.345	0/1:73:34,39:34:1224:39:1382:-102.702,0,-88.4919	1/1:123:1,122:1:36:122:4354:-388.436,-33.4284,0	0/1:103:52,51:52:1872:51:1816:-132.715,0,-137.753	1/1:201:2,198:2:72:198:7057:-628.356,-53.7291,0	1/1:136:0,136:0:0:136:4875:-438.901,-40.9401,0	0/1:201:107,94:107:3836:94:3361:-242.198,0,-284.929	1/1:53:0,53:0:0:53:1888:-170.198,-15.9546,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:134:0,134:0:0:134:4779:-430.267,-40.338,0	0/1:27:9,18:9:324:18:644:-50.1628,0,-21.378	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:163:111,52:111:3973:52:1859:-118.521,0,-307.835	1/1:42:0,42:0:0:42:1482:-133.673,-12.6433,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:8:0,8:0:0:8:288:-26.2658,-2.40824,0	0/1:79:44,35:44:1580:35:1233:-87.4907,0,-118.674	1/1:90:0,90:0:0:90:3205:-288.672,-27.0927,0	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	1/1:280:0,280:0:0:280:9998:-899.757,-84.2884,0	1/1:210:4,206:4:144:206:7360:-649.121,-49.9027,0	0/1:65:34,31:34:1224:31:1116:-81.1847,0,-90.9001	1/1:93:0,93:0:0:93:3324:-299.378,-27.9958,0	1/1:134:1,133:1:36:133:4764:-425.319,-36.7397,0	1/1:102:0,101:0:0:101:3598:-323.667,-30.404,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:38:0,38:0:0:38:1368:-123.418,-11.4391,0	1/1:67:0,67:0:0:67:2399:-216.166,-20.169,0	0/1:54:32,22:32:1144:22:788:-54.9892,0,-85.7501	0/1:27:10,17:10:356:17:608:-46.9242,0,-24.2534	0/1:85:39,46:39:1400:46:1652:-123.381,0,-100.712	0/1:131:69,62:69:2457:62:2220:-160.63,0,-181.947	1/1:131:0,131:0:0:131:4680:-421.23,-39.4349,0	1/1:82:0,82:0:0:82:2921:-263.124,-24.6845,0	1/1:141:1,140:1:32:140:5015:-448.293,-39.2459,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:131:0,131:0:0:131:4706:-423.698,-39.4349,0	1/1:61:0,61:0:0:61:2184:-196.335,-18.3628,0	1/1:200:0,200:0:0:200:7146:-643.181,-60.206,0	0/1:126:50,76:50:1796:76:2728:-207.833,0,-123.993	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	0/1:71:44,27:44:1584:27:968:-66.0642,0,-121.461	0/1:170:82,88:82:2940:88:3143:-231.92,0,-213.341	0/1:41:20,21:20:720:21:756:-56.025,0,-52.7865	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:61:0,60:0:0:60:2160:-194.307,-18.0618,0	0/1:27:14,13:14:504:13:464:-33.9697,0,-37.5703	0/1:96:56,40:56:2012:40:1440:-100.999,0,-152.454	0/1:66:48,18:48:1719:18:644:-38.4226,0,-135.109	1/1:102:0,102:0:0:102:3656:-329.23,-30.7051,0	1/1:94:0,94:0:0:94:3368:-303.335,-28.2968,0
chr06	6010650	.	TT	TC	84294.7	PASS	AB=0.491866;ABP=4.21136;AC=140;AF=0.744681;AN=188;AO=3472;CIGAR=1M1X;DP=4556;DPB=4557;DPRA=0;EPP=4127.45;EPPR=1589.41;GTI=1;LEN=1;MEANALT=1.2234;MQM=59.9922;MQMR=59.9821;NS=94;NUMALT=1;ODDS=0.739671;PAIRED=0;PAIREDR=0;PAO=1;PQA=36;PQR=0;PRO=0;QA=123336;QR=36352;RO=1060;RPL=452;RPP=4127.45;RPPR=1589.41;RPR=3020;RUN=1;SAF=0;SAP=7542.36;SAR=3472;SRF=0;SRP=2304.77;SRR=1060;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:14,7:14:476:7:248:-16.3426,0,-36.8409	0/1:58:40,18:40:1328:18:636:-40.1083,0,-102.337	0/1:99:51,48:51:1775:48:1708:-124.204,0,-130.227	1/1:114:0,113:0:0:113:3986:-358.68,-34.0164,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:59:25,34:25:868:34:1205:-90.9941,0,-60.673	0/1:43:22,20:22:753:20:716:-51.8693,0,-55.1862	0/1:32:20,12:20:693:12:428:-29.2258,0,-53.0574	0/1:20:11,9:11:394:9:309:-22.1201,0,-29.7809	1/1:67:0,66:0:0:66:2341:-210.696,-19.868,0	0/1:43:19,24:19:645:24:828:-61.889,0,-45.4213	0/1:30:12,17:12:430:17:608:-46.0662,0,-30.0519	1/1:34:2,32:2:50:32:1136:-97.7969,-5.48528,0	0/1:32:13,19:13:449:19:680:-51.8962,0,-31.1048	0/1:22:13,9:13:444:9:311:-21.7011,0,-33.6628	1/1:11:0,11:0:0:11:365:-33.1696,-3.31133,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:97:60,36:60:2076:36:1267:-85.1797,0,-157.955	0/1:92:37,55:37:1197:55:1964:-149.341,0,-80.3197	1/1:43:0,43:0:0:43:1522:-137.273,-12.9443,0	0/1:56:35,21:35:1197:21:752:-51.1486,0,-91.1693	0/1:27:13,14:13:429:14:500:-37.2084,0,-30.7974	0/1:34:23,11:23:805:11:388:-25.0223,0,-62.5335	1/1:116:0,116:0:0:116:4152:-373.863,-34.9195,0	1/1:117:0,116:0:0:116:4133:-371.922,-34.9195,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:133:55,77:55:1882:77:2727:-205.674,0,-129.665	0/1:56:31,25:31:1013:25:892:-63.742,0,-74.594	0/1:63:27,36:27:899:36:1281:-96.6264,0,-62.2481	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:319:-29.0514,-2.70927,0	0/1:6:4,2:4:142:2:72:-5.03054,0,-11.323	0/1:13:3,10:3:95:10:347:-27.6502,0,-4.95052	1/1:19:0,19:0:0:19:665:-60.1158,-5.71957,0	0/1:152:66,86:66:2326:86:3024:-226.573,0,-163.782	1/1:47:0,46:0:0:46:1647:-148.159,-13.8474,0	0/1:36:15,21:15:514:21:747:-56.7172,0,-35.7462	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:72:0,72:0:0:72:2575:-232,-21.6742,0	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	0/1:49:27,21:27:945:21:752:-53.3019,0,-70.66	0/1:25:11,14:11:394:14:485:-36.4512,0,-28.2758	0/1:39:20,19:20:705:19:661:-48.0714,0,-52.0337	1/1:62:0,62:0:0:62:2200:-198.263,-18.6639,0	0/1:53:31,22:31:1040:22:784:-54.9293,0,-77.943	1/1:149:2,145:2:72:145:5145:-456.363,-37.7695,0	1/1:51:0,50:0:0:50:1775:-159.673,-15.0515,0	0/1:67:35,32:35:1218:32:1131:-81.9278,0,-89.7519	1/1:70:1,69:1:36:69:2476:-219.494,-17.4738,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:82:0,81:0:0:81:2866:-257.918,-24.3834,0	0/1:25:5,19:5:178:19:680:-54.0491,0,-8.8763	0/1:7:5,2:5:174:2:72:-4.72951,0,-13.8944	0/1:78:36,41:36:1238:41:1449:-107.274,0,-88.2867	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	1/1:73:0,71:0:0:71:2494:-224.413,-21.3731,0	0/1:9:2,4:2:70:4:144:-11.1514,0,-4.48996	1/1:135:0,135:0:0:135:4824:-434.316,-40.6391,0	1/1:94:1,93:1:36:93:3319:-295.33,-24.6985,0	0/1:40:24,15:24:779:15:537:-36.6028,0,-58.3487	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	1/1:61:1,60:1:25:60:2136:-190.008,-15.863,0	1/1:64:1,63:1:34:63:2244:-198.825,-15.867,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:14:5,9:5:163:9:324:-25.2914,0,-10.7763	0/1:76:42,34:42:1459:34:1212:-86.508,0,-108.723	0/1:37:24,13:24:808:13:453:-29.9624,0,-61.8896	0/1:57:19,38:19:669:38:1340:-103.739,0,-43.3763	1/1:91:0,91:0:0:91:3256:-293.261,-27.3937,0	1/1:42:0,41:0:0:41:1464:-131.735,-12.3422,0	1/1:54:0,54:0:0:54:1922:-173.256,-16.2556,0	0/1:8:6,2:6:214:2:72:-4.42848,0,-17.1995	1/1:69:1,68:1:34:68:2413:-214.026,-17.3722,0	1/1:56:0,56:0:0:56:1995:-179.823,-16.8577,0	1/1:108:0,108:0:0:108:3851:-346.787,-32.5112,0	0/1:43:23,20:23:811:20:703:-50.6492,0,-60.3656	1/1:33:0,33:0:0:33:1171:-105.698,-9.93399,0	0/1:12:8,4:8:277:4:144:-9.70126,0,-21.6527	0/1:61:26,35:26:891:35:1243:-93.811,0,-62.1376	0/1:14:9,5:9:295:5:180:-12.3376,0,-22.6532	1/1:42:0,42:0:0:42:1463:-131.961,-12.6433,0	1/1:42:0,41:0:0:41:1470:-132.343,-12.3422,0	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/1:62:31,31:31:1061:31:1098:-80.4648,0,-77.1281	0/1:43:31,12:31:1054:12:417:-24.9159,0,-82.2188	1/1:113:0,112:0:0:112:3995:-359.381,-33.7154,0	1/1:39:0,39:0:0:39:1352:-121.975,-11.7402,0
chr06	6010662	.	C	G	17415.6	PASS	AB=0.506995;ABP=3.89125;AC=48;AF=0.255319;AN=188;AO=1057;CIGAR=1X;DP=4536;DPB=4536;DPRA=0.960101;EPP=2280.92;EPPR=7462.22;GTI=0;LEN=1;MEANALT=1.07547;MQM=59.9697;MQMR=59.9813;NS=94;NUMALT=1;ODDS=0.325947;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37571;QR=123585;RO=3471;RPL=1055;RPP=2280.92;RPPR=7462.22;RPR=2;RUN=1;SAF=0;SAP=2298.26;SAR=1057;SRF=0;SRP=7540.19;SRR=3471;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:7,14:7:252:14:500:-39.0145,0,-16.7073	0/1:55:18,37:18:640:37:1311:-101.733,0,-41.3727	0/1:99:47,51:47:1676:51:1824:-134.58,0,-121.267	0/0:107:107,0:107:3827:0:0:0,-32.2102,-344.626	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8767	0/0:4:3,0:3:108:0:0:0,-0.90309,-9.71534	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/1:58:33,25:33:1160:25:896:-63.5006,0,-87.2442	0/1:44:22,22:22:779:22:788:-57.9995,0,-57.1867	0/1:32:12,20:12:428:20:693:-53.0566,0,-29.2258	0/1:20:9,11:9:316:11:392:-29.5995,0,-22.7356	0/0:65:65,0:65:2298:0:0:0,-19.5669,-207.081	0/1:43:24,19:24:851:19:684:-48.946,0,-63.9652	0/1:28:16,12:16:572:12:424:-30.0676,0,-43.3846	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/1:32:18,14:18:644:14:504:-36.0651,0,-48.6576	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4406	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/1:99:38,60:38:1356:60:2139:-162.917,0,-92.4798	0/1:92:54,38:54:1928:38:1344:-93.5654,0,-146.102	0/0:42:42,0:42:1472:0:0:0,-12.6433,-132.772	0/1:53:21,32:21:756:32:1136:-86.5943,0,-52.4126	0/1:27:14,13:14:500:13:439:-31.7034,0,-37.2084	0/1:33:10,23:10:356:23:824:-64.5493,0,-22.4473	0/0:118:118,0:118:4203:0:0:0,-35.5215,-378.453	0/0:117:116,0:116:4118:0:0:0,-34.9195,-370.487	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:132:76,56:76:2707:56:1987:-139.367,0,-204.081	0/1:61:25,35:25:888:35:1234:-92.9787,0,-61.8559	0/1:60:33,27:33:1176:27:960:-68.6545,0,-88.086	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:12:9,3:9:315:3:104:-6.09045,0,-25.0749	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/1:148:84,64:84:2992:64:2279:-160.819,0,-224.961	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/1:35:21,14:21:756:14:500:-34.8001,0,-57.8312	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/0:21:21,0:21:735:0:0:0,-6.32163,-66.4714	0/1:51:22,29:22:780:29:1021:-76.8477,0,-55.1705	0/1:25:14,11:14:492:11:392:-28.0943,0,-37.0866	0/1:38:18,20:18:631:20:716:-53.3286,0,-45.6765	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.354	0/1:53:22,31:22:779:31:1112:-84.4368,0,-54.4775	0/0:150:148,2:148:5287:2:72:0,-38.3178,-469.129	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/1:66:30,35:30:1071:35:1252:-93.0586,0,-76.7752	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:81:81,0:81:2868:0:0:0,-24.3834,-258.356	0/1:24:19,5:19:684:5:176:-8.9603,0,-54.6656	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/1:80:43,37:43:1540:37:1324:-95.3797,0,-114.811	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:135:135,0:135:4821:0:0:0,-40.639,-434.044	0/0:92:91,1:91:3260:1:36:0,-24.0965,-290.022	0/1:40:16,24:16:572:24:860:-65.6806,0,-39.7722	0/0:60:60,0:60:2151:0:0:0,-18.0618,-193.857	0/0:60:59,1:59:2112:1:36:0,-14.4635,-186.751	0/0:66:65,1:65:2320:1:36:0,-16.2697,-205.462	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:75:34,41:34:1212:41:1463:-109.387,0,-86.8091	0/1:37:13,24:13:460:24:847:-65.4106,0,-30.5973	0/1:58:39,19:39:1381:19:680:-44.0694,0,-107.127	0/0:92:91,0:91:3245:0:0:0,-27.3937,-291.134	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/0:54:54,0:54:1906:0:0:0,-16.2556,-171.816	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:71:70,1:70:2503:1:32:0,-18.1738,-222.323	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:108:108,0:108:3823:0:0:0,-32.5112,-344.268	0/1:43:20,23:20:720:23:815:-60.7265,0,-52.1845	0/0:33:32,0:32:1148:0:0:0,-9.63296,-103.27	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	0/1:61:35,26:35:1233:26:924:-65.1148,0,-92.9093	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:18:9,9:9:320:9:320:-23.7238,0,-23.7238	0/1:57:29,28:29:1032:28:984:-71.7147,0,-76.0348	0/1:44:11,33:11:392:33:1143:-89.9258,0,-22.3747	0/0:116:116,0:116:4115:0:0:0,-34.9195,-370.538	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102
chr06	6010768	.	C	T	117649	PASS	AB=0.476756;ABP=16.8401;AC=140;AF=0.744681;AN=188;AO=4644;CIGAR=1X;DP=6210;DPB=6210;DPRA=0;EPP=3341.38;EPPR=705.329;GTI=1;LEN=1;MEANALT=1.03191;MQM=54.6632;MQMR=58.7409;NS=94;NUMALT=1;ODDS=1.92301;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166090;QR=55750;RO=1563;RPL=3658;RPP=3341.38;RPPR=705.329;RPR=986;RUN=1;SAF=4644;SAP=10087.3;SAR=0;SRF=1563;SRP=3397.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:34,15:34:1199:15:532:-32.563,0,-93.4017	0/1:85:33,52:33:1184:52:1831:-133.502,0,-81.1317	0/1:77:40,37:40:1432:37:1332:-93.9527,0,-105.649	1/1:116:0,116:0:0:116:4161:-374.325,-34.9195,0	1/1:45:0,45:0:0:45:1612:-144.836,-13.5464,0	1/1:38:0,38:0:0:38:1364:-120.677,-11.4391,0	1/1:81:0,81:0:0:81:2865:-257.448,-24.3834,0	0/1:73:46,27:46:1644:27:964:-63.4493,0,-126.014	0/1:126:65,61:65:2323:61:2188:-154.957,0,-171.267	0/1:59:25,34:25:883:34:1216:-91.8523,0,-62.0267	0/1:33:13,20:13:464:20:716:-54.8181,0,-32.1631	1/1:61:0,61:0:0:61:2187:-192.039,-18.3628,0	0/1:42:15,27:15:525:27:960:-71.7467,0,-34.9052	0/1:37:19,18:19:684:18:640:-46.6375,0,-50.7518	1/1:43:1,42:1:36:42:1489:-130.566,-9.34602,0	0/1:24:16,8:16:576:8:288:-18.9325,0,-44.9499	0/1:54:31,23:31:1088:23:824:-55.6639,0,-81.9004	1/1:38:0,38:0:0:38:1350:-119.311,-11.4391,0	1/1:25:0,25:0:0:25:900:-79.367,-7.52575,0	0/1:104:62,42:62:2220:42:1512:-104.876,0,-168.198	0/1:84:39,45:39:1378:45:1610:-119.684,0,-99.0272	1/1:104:0,104:0:0:104:3731:-335.149,-31.3071,0	0/1:65:35,30:35:1247:30:1072:-76.9969,0,-92.9447	0/1:63:26,37:26:916:37:1328:-100.738,0,-63.7908	0/1:76:45,31:45:1608:31:1112:-77.1465,0,-122.128	1/1:211:0,211:0:0:211:7539:-677.299,-63.5173,0	1/1:140:0,140:0:0:140:5000:-449.494,-42.1442,0	1/1:22:0,22:0:0:22:792:-71.3154,-6.62266,0	0/1:232:135,96:135:4814:96:3448:-240.427,0,-363.644	0/1:88:41,47:41:1459:47:1688:-125.206,0,-104.961	0/1:68:35,33:35:1244:33:1184:-84.9644,0,-91.7934	1/1:5:0,5:0:0:5:180:-16.55,-1.50515,0	1/1:16:0,16:0:0:16:572:-51.8072,-4.81648,0	0/1:3:1,2:1:36:2:72:-5.78683,0,-2.69347	0/1:7:1,6:1:36:6:216:-17.2583,0,-1.48935	1/1:7:0,7:0:0:7:252:-22.6051,-2.10721,0	0/1:170:95,75:95:3369:75:2675:-189.576,0,-252.089	1/1:136:0,135:0:0:135:4824:-432.194,-40.6391,0	0/1:66:27,39:27:953:39:1398:-103.918,0,-66.1109	1/1:1:0,1:0:0:1:36:-3.59783,-0.30103,0	1/1:79:0,79:0:0:79:2825:-253.901,-23.7814,0	1/1:27:0,27:0:0:27:964:-87.0672,-8.12781,0	0/1:90:58,32:58:2063:32:1133:-74.8979,0,-158.714	0/1:48:20,28:20:711:28:1008:-76.2954,0,-49.8658	0/1:49:21,28:21:756:28:1000:-75.3351,0,-53.6168	1/1:87:0,87:0:0:87:3120:-280.205,-26.1896,0	0/1:92:48,44:48:1711:44:1568:-110.137,0,-126.312	1/1:107:0,107:0:0:107:3844:-344.557,-32.2102,0	1/1:116:0,116:0:0:116:4145:-372.332,-34.9195,0	0/1:98:49,49:49:1764:49:1756:-128.335,0,-129.543	1/1:134:0,134:0:0:134:4800:-430.871,-40.338,0	0/1:18:14,4:14:496:4:144:-7.89343,0,-39.5543	1/1:97:0,97:0:0:97:3480:-307.067,-29.1999,0	0/1:28:14,14:14:504:14:504:-37.264,0,-37.2669	0/1:13:8,5:8:288:5:176:-11.9574,0,-22.3415	0/1:80:46,34:46:1652:34:1220:-84.8169,0,-124.56	1/1:36:0,36:0:0:36:1277:-114.656,-10.8371,0	1/1:1:0,1:0:0:1:36:-3.59783,-0.30103,0	1/1:6:0,6:0:0:6:212:-19.3152,-1.80618,0	0/1:41:18,23:18:644:23:828:-61.4077,0,-45.948	1/1:98:0,98:0:0:98:3507:-314.937,-29.5009,0	0/1:13:5,8:5:180:8:284:-21.974,0,-12.6383	1/1:140:1,139:1:36:139:4973:-443.562,-38.5459,0	1/1:134:2,132:2:72:132:4732:-418.532,-33.5013,0	0/1:18:8,10:8:288:10:356:-26.8886,0,-20.8473	1/1:46:0,45:0:0:45:1581:-141.142,-13.5464,0	1/1:97:3,94:3:108:94:3368:-292.651,-19.1247,0	1/1:72:0,72:0:0:72:2576:-231.579,-21.6742,0	1/1:17:0,17:0:0:17:603:-54.4304,-5.11751,0	1/1:38:0,38:0:0:38:1360:-120.08,-11.4391,0	1/1:61:0,61:0:0:61:2188:-196.594,-18.3628,0	0/1:24:9,15:9:320:15:521:-39.9824,0,-21.9172	0/1:98:50,48:50:1800:48:1724:-121.535,0,-132.295	0/1:78:37,41:37:1328:41:1472:-106.796,0,-96.2466	0/1:92:44,48:44:1571:48:1709:-126.03,0,-113.204	1/1:90:0,90:0:0:90:3230:-290.595,-27.0927,0	1/1:54:0,54:0:0:54:1928:-170.408,-16.2556,0	1/1:75:0,75:0:0:75:2672:-234.975,-22.5773,0	0/0:14:13,1:13:464:1:36:0,-0.693411,-38.4908	1/1:69:0,69:0:0:69:2475:-222.287,-20.7711,0	1/1:64:0,64:0:0:64:2296:-201.599,-19.2659,0	1/1:137:0,137:0:0:137:4914:-441.788,-41.2411,0	0/1:65:32,33:32:1137:33:1179:-86.7246,0,-82.9626	1/1:38:0,38:0:0:38:1355:-121.918,-11.4391,0	0/1:56:31,25:31:1107:25:895:-63.8156,0,-83.0786	0/1:89:50,39:50:1776:39:1360:-95.5895,0,-133.328	0/1:28:12,16:12:432:16:576:-42.0655,0,-30.7768	1/1:44:1,43:1:36:43:1544:-132.915,-9.64876,0	1/1:58:0,58:0:0:58:2076:-182.825,-17.4597,0	0/1:24:13,11:13:468:11:396:-28.066,0,-35.2211	0/1:60:31,29:31:1104:29:1040:-75.7715,0,-81.5849	0/1:60:44,16:44:1580:16:563:-32.8619,0,-124.427	1/1:58:0,58:0:0:58:2061:-185.493,-17.4597,0	1/1:80:1,79:1:36:79:2840:-252.141,-20.4841,0
chr06	6027559	.	T	C	44912.8	PASS	AB=0.507924;ABP=5.86676;AC=49;AF=0.260638;AN=188;AO=2671;CIGAR=1X;DP=11179;DPB=11179;DPRA=0.994141;EPP=5803.01;EPPR=18473.6;GTI=1;LEN=1;MEANALT=1.01786;MQM=59.7896;MQMR=59.9597;NS=94;NUMALT=1;ODDS=2.44544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95236;QR=304225;RO=8506;RPL=0;RPP=5803.01;RPPR=18464.9;RPR=2671;RUN=1;SAF=0;SAP=5803.01;SAR=2671;SRF=1;SRP=18464.9;SRR=8505;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/1:208:98,110:98:3499:110:3943:-292.44,0,-252.237	0/1:182:87,95:87:3128:95:3368:-248.539,0,-226.954	0/0:293:293,0:293:10465:0:0:0,-88.2018,-941.764	0/0:31:30,1:30:1076:1:36:0,-5.73365,-93.55	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:167:166,0:166:5948:0:0:0,-49.971,-535.067	0/1:228:110,118:110:3936:118:4217:-311.054,0,-285.798	0/1:69:26,43:26:932:43:1517:-115.936,0,-63.4278	0/1:155:90,65:90:3224:65:2311:-161.588,0,-243.721	0/1:52:15,37:15:540:37:1320:-103.446,0,-33.2653	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:74:42,32:42:1500:32:1148:-81.3523,0,-113.018	0/1:55:24,31:24:855:31:1112:-83.8301,0,-60.7135	0/0:93:93,0:93:3324:0:0:0,-27.9958,-299.378	0/1:53:20,33:20:712:33:1163:-89.0215,0,-48.4521	0/1:55:25,30:25:900:30:1080:-80.9566,0,-64.7644	0/0:75:75,0:75:2663:0:0:0,-22.5772,-239.913	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:220:96,124:96:3417:124:4435:-333.086,0,-241.514	0/1:207:101,106:101:3592:106:3804:-280.049,0,-261.176	0/0:107:107,0:107:3808:0:0:0,-32.2102,-342.916	0/1:122:60,62:60:2152:62:2222:-163.502,0,-157.222	0/1:144:86,58:86:3073:58:2080:-144.116,0,-233.258	0/1:67:24,43:24:860:43:1544:-119.081,0,-57.5528	0/0:410:409,1:409:14645:1:36:0,-119.824,-1314.03	0/0:219:218,1:218:7796:1:36:0,-62.3273,-698.054	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:402:207,195:207:7401:195:6995:-508.588,0,-545.113	0/1:198:113,85:113:4044:85:3031:-213.398,0,-304.544	0/1:214:111,103:111:3963:103:3678:-266.782,0,-292.441	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:16:6,10:6:212:10:360:-27.9278,0,-14.5904	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:213:92,121:92:3295:121:4257:-319.124,0,-232.649	0/0:178:178,0:178:6357:0:0:0,-53.5833,-572.221	0/1:60:32,28:32:1148:28:1008:-72.9645,0,-85.568	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:212:212,0:212:7576:0:0:0,-63.8184,-681.877	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.655	0/1:145:65,80:65:2332:80:2867:-213.822,0,-166.49	0/1:85:36,49:36:1296:49:1756:-132.734,0,-91.3564	0/1:71:40,31:40:1432:31:1094:-77.3919,0,-107.804	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/1:168:93,75:93:3340:75:2677:-190.59,0,-250.243	0/0:252:252,0:252:9004:0:0:0,-75.8596,-810.247	0/0:201:201,0:201:7152:0:0:0,-60.507,-643.74	0/1:228:122,106:122:4352:106:3768:-270.675,0,-323.222	0/0:243:243,0:243:8677:0:0:0,-73.1503,-780.895	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/0:145:145,0:145:5179:0:0:0,-43.6493,-466.251	0/1:38:15,23:15:540:23:803:-61.1492,0,-37.4974	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:186:100,86:100:3575:86:3088:-222.144,0,-265.966	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.937	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:90:46,44:46:1652:44:1565:-114.038,0,-121.872	0/0:110:106,4:106:3800:4:144:0,-19.7997,-328.884	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/0:377:377,0:377:13507:0:0:0,-113.488,-1215.41	0/0:232:230,2:230:8252:2:72:0,-63.0022,-735.849	0/1:97:61,36:61:2196:36:1288:-87.0191,0,-168.699	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/0:215:215,0:215:7629:0:0:0,-64.7214,-686.643	0/0:119:119,0:119:4264:0:0:0,-35.8226,-383.938	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/0:99:98,1:98:3491:1:36:0,-26.2037,-310.78	0/1:25:19,6:19:680:6:216:-12.2648,0,-54.0034	0/1:112:49,63:49:1748:63:2252:-169.221,0,-123.889	0/1:154:79,74:79:2840:74:2647:-192.052,0,-209.42	0/1:202:94,108:94:3345:108:3836:-284.615,0,-240.459	0/0:306:305,1:305:10928:1:36:0,-88.5169,-979.814	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:178:178,0:178:6384:0:0:0,-53.5833,-574.644	0/1:15:10,5:10:360:5:176:-11.6696,0,-28.2289	0/0:175:175,0:175:6265:0:0:0,-52.6802,-563.932	0/0:145:145,0:145:5194:0:0:0,-43.6493,-467.597	0/0:176:176,0:176:6292:0:0:0,-52.9813,-566.374	0/1:99:53,46:53:1904:46:1615:-115.831,0,-141.836	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/1:99:49,50:49:1760:50:1780:-130.678,0,-128.692	0/1:166:66,100:66:2355:100:3561:-270.709,0,-162.237	0/1:34:12,22:12:432:22:765:-58.9327,0,-28.9862	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.398	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:28:17,11:17:608:11:388:-26.8285,0,-46.6232	0/1:77:35,42:35:1252:42:1482:-110.489,0,-89.8058	0/1:78:25,53:25:900:53:1871:-145.188,0,-57.8407	0/0:207:207,0:207:7404:0:0:0,-62.3132,-666.407	0/0:118:118,0:118:4227:0:0:0,-35.5215,-380.609
chr06	6048471	.	AGAT	AGAC,GGAC	77900.8	PASS	AB=0.518053,0.475383;ABP=8.18477,12.6323;AC=136,52;AF=0.723404,0.276596;AN=188;AO=2817,878;CIGAR=3M1X,1X2M1X;DP=3714;DPB=3714.25;DPRA=16.1261,0.896722;EPP=6120.05,1909.56;EPPR=0;GTI=4;LEN=1,4;MEANALT=1.75,2.19231;MQM=60,59.9522;MQMR=0;NS=94;NUMALT=2;ODDS=0.70214;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=99824,30430;QR=0;RO=0;RPL=2813,878;RPP=6085.35,1909.56;RPPR=0;RPR=4,0;RUN=1,1;SAF=2813,878;SAP=6085.35,1909.56;SAR=4,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:36:0,22,14:0:0:22,14:769,480:-101.872,-39.3109,-32.6883,-62.9059,0,-58.6915	1/2:23:0,8,15:0:0:8,15:288,528:-66.838,-43.3358,-40.9276,-23.8592,0,-19.3437	1/2:60:0,40,19:0:0:40,19:1440,659:-171.058,-53.5529,-41.5117,-117.497,0,-111.777	1/1:74:0,73,0:0:0:73,0:2565,0:-230.847,-21.9752,0,-230.847,-21.9752,-230.847	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/2:40:0,17,22:0:0:17,22:608,769:-112.176,-62.5947,-57.4772,-49.6202,0,-42.9975	1/2:36:0,7,29:0:0:7,29:252,1012:-103.207,-82.643,-80.5358,-20.9217,0,-12.1919	1/2:59:0,31,28:0:0:31,28:1106,977:-169.978,-79.812,-70.4801,-90.5182,0,-82.0894	1/2:34:0,19,15:0:0:19,15:684,522:-98.6104,-42.7928,-37.0732,-56.1708,0,-51.6553	1/1:51:0,50,0:0:0:50,0:1761,0:-158.539,-15.0515,0,-158.539,-15.0515,-158.539	1/2:44:0,25,19:0:0:25,19:892,662:-126.905,-54.1832,-46.6574,-73.0739,0,-67.3544	1/2:25:0,10,15:0:0:10,15:340,514:-69.6463,-42.0685,-39.0582,-27.9187,0,-23.4033	1/1:54:0,54,0:0:0:54,0:1916,0:-172.717,-16.2556,0,-172.717,-16.2556,-172.717	1/2:31:0,18,13:0:0:18,13:631,450:-88.2642,-36.9149,-31.4963,-51.6971,0,-47.7838	1/2:20:0,14,6:0:0:14,6:500,201:-57.3921,-16.6118,-12.3974,-41.1218,0,-39.3156	1/1:14:0,14,0:0:0:14,0:496,0:-44.9743,-4.21442,0,-44.9743,-4.21442,-44.9743	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:39:0,19,20:0:0:19,20:671,691:-111.136,-56.4891,-50.7695,-54.9962,0,-48.9756	1/2:97:0,47,50:0:0:47,50:1671,1738:-277.826,-141.65,-127.501,-136.528,0,-121.477	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/2:25:0,13,12:0:0:13,12:468,428:-73.4349,-35.2468,-31.3334,-38.5463,0,-34.9339	1/2:28:0,14,14:0:0:14,14:500,485:-80.5338,-39.7637,-35.5493,-41.1218,0,-36.9073	1/2:33:0,26,7:0:0:26,7:923,237:-94.7712,-19.5532,-11.7264,-75.56,0,-73.4528	1/1:89:0,86,3:0:0:86,3:3064,95:-275.67,-25.8886,0,-268.027,-17.928,-267.124	1/1:93:0,92,0:0:0:92,0:3245,0:-291.98,-27.6948,0,-291.98,-27.6948,-291.98	1/1:27:0,27,0:0:0:27,0:955,0:-86.2648,-8.12781,0,-86.2648,-8.12781,-86.2648	1/2:57:0,29,28:0:0:29,28:1004,970:-160.772,-79.1809,-70.451,-81.9378,0,-73.5089	1/2:55:0,31,23:0:0:31,23:1104,798:-154.842,-64.8541,-55.5222,-89.979,0,-83.0553	1/2:46:0,20,26:0:0:20,26:711,907:-132.059,-74.1168,-68.0962,-58.295,0,-50.4683	1/1:21:0,21,0:0:0:21,0:747,0:-67.5543,-6.32163,0,-67.5543,-6.32163,-67.5543	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:4:0,1,3:0:0:1,3:36,99:-11.2791,-8.33421,-8.03318,-3.29724,0,-2.39415	1/2:5:0,3,2:0:0:3,2:108,68:-14.68,-5.85582,-4.95273,-9.17208,0,-8.57002	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:143:0,77,65:0:0:77,65:2707,2277:-405.611,-185.268,-162.088,-220.335,0,-200.768	1/1:45:0,45,0:0:0:45,0:1620,0:-146.09,-13.5464,0,-146.09,-13.5464,-146.09	1/2:30:0,19,11:0:0:19,11:676,375:-85.8685,-30.7663,-25.0468,-55.4484,0,-52.1371	2/2:4:0,0,4:0:0:0,4:0,142:-13.1293,-13.1293,-13.1293,-1.20412,-1.20412,0	1/1:19:0,18,0:0:0:18,0:640,0:-57.6738,-5.41854,0,-57.6738,-5.41854,-57.6738	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:35:0,16,19:0:0:16,19:572,649:-99.6546,-53.0078,-48.1913,-46.9969,0,-41.2774	1/2:29:0,14,15:0:0:14,15:495,507:-81.7581,-41.4354,-37.221,-40.6686,0,-36.1532	1/2:28:0,8,18:0:0:8,18:269,633:-73.4026,-51.6125,-49.2043,-21.8567,0,-16.4381	1/1:31:0,30,0:0:0:30,0:1067,0:-95.9815,-9.0309,0,-95.9815,-9.0309,-95.9815	1/2:18:0,9,9:0:0:9,9:324,304:-51.4259,-24.9781,-22.2688,-26.7966,0,-24.0873	1/1:39:0,39,0:0:0:39,0:1372,0:-123.776,-11.7402,0,-123.776,-11.7402,-123.776	1/1:44:0,44,0:0:0:44,0:1563,0:-140.961,-13.2453,0,-140.961,-13.2453,-140.961	1/2:57:0,35,21:0:0:35,21:1226,708:-157.108,-57.3442,-46.8082,-99.7466,0,-93.425	1/2:21:0,19,2:0:0:19,2:680,72:-61.6846,-6.23466,-0.515092,-55.8096,0,-55.2075	1/2:3:0,2,1:0:0:2,1:57,36:-7.77364,-3.29724,-2.69518,-4.81125,0,-4.51022	1/1:46:0,46,0:0:0:46,0:1624,0:-146.446,-13.8474,0,-146.446,-13.8474,-146.446	1/2:13:0,8,5:0:0:8,5:288,168:-37.459,-13.9449,-11.5367,-23.8592,0,-22.354	1/2:6:0,4,2:0:0:4,2:144,71:-17.893,-6.14,-4.93588,-12.1095,0,-11.5074	1/2:39:0,17,22:0:0:17,22:600,755:-110.505,-61.6423,-56.5247,-49.2117,0,-42.589	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:17:0,17,0:0: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chr06	6219469	.	A	T	111632	PASS	AB=0.36841;ABP=724.799;AC=135;AF=0.725806;AN=186;AO=5560;CIGAR=1X;DP=8607;DPB=8607;DPRA=35.8292;EPP=12059;EPPR=6593.43;GTI=5;LEN=1;MEANALT=1.12222;MQM=59.893;MQMR=59.9848;NS=93;NUMALT=1;ODDS=2.8858;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196882;QR=108846;RO=3035;RPL=2;RPP=12059;RPPR=6593.43;RPR=5558;RUN=1;SAF=0;SAP=12076.4;SAR=5560;SRF=0;SRP=6593.43;SRR=3035;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/1:194:117,77:117:4196:77:2719:-186.359,0,-319.421	0/1:114:84,30:84:3016:30:1061:-61.4819,0,-237.353	1/1:159:0,159:0:0:159:5597:-503.764,-47.8638,0	1/1:33:1,32:1:36:32:1118:-97.3252,-6.33572,0	1/1:51:0,51:0:0:51:1807:-162.91,-15.3525,0	1/1:108:0,108:0:0:108:3794:-341.635,-32.5112,0	0/1:189:110,79:110:3943:79:2817:-196.851,0,-298.166	0/1:108:70,38:70:2516:38:1307:-85.4112,0,-194.18	0/1:143:88,55:88:3149:55:1935:-131.369,0,-240.585	0/1:44:29,15:29:1044:15:505:-32.5227,0,-81.0295	1/1:70:0,70:0:0:70:2497:-224.981,-21.0721,0	0/1:100:60,39:60:2145:39:1392:-95.4173,0,-163.154	0/1:72:37,35:37:1320:35:1246:-90.7704,0,-97.4278	1/1:67:0,67:0:0:67:2389:-215.266,-20.169,0	0/1:65:42,23:42:1504:23:811:-53.7306,0,-116.088	0/1:89:50,38:50:1796:38:1364:-96.2103,0,-135.072	1/1:47:0,47:0:0:47:1632:-147.152,-14.1484,0	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	0/1:166:125,41:125:4473:41:1456:-81.3634,0,-352.767	0/1:186:112,74:112:4012:74:2635:-181.333,0,-305.277	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:142:102,40:102:3635:40:1410:-84.4424,0,-284.608	0/1:156:127,29:127:4537:29:1025:-45.6,0,-361.535	0/1:60:36,24:36:1292:24:864:-60.0208,0,-98.522	1/1:322:0,321:0:0:321:11192:-1006.63,-96.6306,0	1/1:161:0,161:0:0:161:5712:-514.196,-48.4658,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:207:120,85:120:4297:85:3037:-211.488,0,-324.834	0/1:170:106,64:106:3808:64:2244:-150.704,0,-291.741	0/1:163:112,50:112:4015:50:1770:-110.453,0,-312.411	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.061,-0.90309,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	.:.:.:.:.:.:.:.	1/1:7:0,6:0:0:6:216:-19.4307,-1.80618,0	0/1:278:181,97:181:6504:97:3422:-224.503,0,-501.755	1/1:113:0,113:0:0:113:4027:-362.597,-34.0164,0	0/1:52:28,24:28:1008:24:833:-59.6314,0,-75.3828	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:89:0,89:0:0:89:3173:-285.771,-26.7917,0	1/1:19:0,19:0:0:19:684:-61.8765,-5.71957,0	0/1:133:92,41:92:3299:41:1453:-91.027,0,-257.091	0/1:92:54,38:54:1944:38:1336:-92.8424,0,-147.541	0/1:94:64,30:64:2289:30:1072:-68.4956,0,-177.973	1/1:84:0,84:0:0:84:2974:-267.855,-25.2865,0	0/1:111:58,53:58:2080:53:1893:-137.163,0,-153.428	1/1:109:0,109:0:0:109:3814:-343.453,-32.8123,0	1/1:86:0,86:0:0:86:2989:-269.234,-25.8886,0	0/1:111:71,40:71:2556:40:1402:-92.8686,0,-196.875	1/1:75:0,75:0:0:75:2688:-242.163,-22.5773,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:65:0,65:0:0:65:2317:-208.789,-19.567,0	0/1:68:46,22:46:1652:22:774:-49.5097,0,-128.498	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/1:142:94,48:94:3380:48:1724:-112.697,0,-261.668	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:14:0,14:0:0:14:489:-44.3389,-4.21442,0	0/1:82:63,19:63:2264:19:684:-37.2059,0,-179.337	1/1:93:0,93:0:0:93:3344:-301.176,-27.9958,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:218:0,218:0:0:218:7700:-692.947,-65.6245,0	1/1:182:0,182:0:0:182:6435:-579.196,-54.7875,0	0/1:106:54,51:54:1936:51:1810:-131.343,0,-142.68	1/1:64:0,64:0:0:64:2291:-206.45,-19.2659,0	1/1:131:0,131:0:0:131:4618:-415.775,-39.4349,0	1/1:81:2,79:2:72:79:2731:-239.184,-17.5467,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:60:0,60:0:0:60:2141:-192.956,-18.0618,0	1/1:98:0,98:0:0:98:3475:-312.958,-29.5009,0	0/1:17:7,10:7:252:10:348:-26.5286,0,-17.9114	0/1:112:52,60:52:1868:60:2124:-157.711,0,-134.684	0/1:86:49,37:49:1760:37:1305:-91.8608,0,-132.795	0/1:171:110,61:110:3937:61:2192:-146.061,0,-303.044	1/1:123:0,122:0:0:122:4354:-391.672,-36.7257,0	1/1:55:0,55:0:0:55:1945:-175.321,-16.5567,0	1/1:127:0,127:0:0:127:4516:-406.6,-38.2308,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	1/1:51:0,51:0:0:51:1783:-160.747,-15.3525,0	1/1:141:0,139:0:0:139:4891:-439.848,-41.8432,0	0/1:144:81,62:81:2916:62:2190:-153.951,0,-219.267	1/1:41:0,41:0:0:41:1457:-131.422,-12.3422,0	0/1:132:86,46:86:3096:46:1641:-108.241,0,-239.13	0/1:212:131,81:131:4691:81:2902:-197.597,0,-358.531	0/1:60:34,26:34:1224:26:917:-64.7828,0,-92.4052	1/1:83:0,83:0:0:83:2957:-266.36,-24.9855,0	1/1:69:0,69:0:0:69:2478:-223.201,-20.7711,0	0/1:32:24,8:24:864:8:288:-16.6344,0,-68.4496	0/1:82:48,34:48:1720:34:1205:-84.0694,0,-130.401	0/1:66:46,20:46:1652:20:701:-43.5437,0,-129.1	1/1:130:0,130:0:0:130:4597:-413.891,-39.1339,0	1/1:100:0,100:0:0:100:3557:-320.337,-30.103,0
chr06	6223779	.	A	G	167839	PASS	AB=0.462333;ABP=67.4636;AC=139;AF=0.747312;AN=186;AO=7903;CIGAR=1X;DP=10734;DPB=10734;DPRA=0;EPP=16887.3;EPPR=6117.89;GTI=0;LEN=1;MEANALT=1.07527;MQM=59.662;MQMR=59.9313;NS=93;NUMALT=1;ODDS=3.9629;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=282316;QR=101106;RO=2824;RPL=32;RPP=16887.3;RPPR=6126.57;RPR=7871;RUN=1;SAF=7903;SAP=17164.2;SAR=0;SRF=2823;SRP=6126.57;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:17,19:17:612:19:684:-51.0532,0,-44.5764	0/1:172:112,60:112:4005:60:2125:-139.684,0,-308.844	0/1:149:75,74:75:2700:74:2652:-194.056,0,-198.39	1/1:256:0,256:0:0:256:9160:-824.22,-77.0637,0	1/1:91:1,90:1:36:90:3228:-287.037,-23.7955,0	1/1:106:0,106:0:0:106:3789:-341.164,-31.9092,0	1/1:252:0,252:0:0:252:9012:-811.037,-75.8596,0	0/1:204:86,118:86:3073:118:4229:-319.346,0,-215.387	0/1:119:67,52:67:2381:52:1829:-129.063,0,-178.233	0/1:162:87,75:87:3120:75:2665:-191.322,0,-232.259	0/1:83:46,37:46:1656:37:1332:-95.1875,0,-124.343	1/1:101:1,100:1:36:100:3574:-318.249,-26.8058,0	0/1:82:42,40:42:1512:40:1432:-104.49,0,-111.69	0/1:63:35,28:35:1256:28:993:-70.7089,0,-94.3804	1/1:88:0,88:0:0:88:3156:-284.24,-26.4906,0	0/1:62:33,29:33:1161:29:1044:-75.4795,0,-86.1309	0/1:64:40,24:40:1440:24:860:-58.4396,0,-110.632	1/1:53:0,53:0:0:53:1904:-171.605,-15.9546,0	1/1:61:1,60:1:32:60:2147:-190.252,-15.1635,0	0/1:291:176,114:176:6305:114:4096:-281.155,0,-479.882	0/1:231:133,98:133:4776:98:3476:-243.47,0,-360.328	1/1:79:0,79:0:0:79:2812:-253.31,-23.7814,0	0/1:140:83,57:83:2957:57:2029:-140.732,0,-224.182	0/1:108:42,66:42:1508:66:2345:-178.588,0,-103.416	0/1:104:39,65:39:1366:65:2315:-177.296,0,-91.9273	1/1:336:0,336:0:0:336:11991:-1078.76,-101.146,0	1/1:167:1,166:1:36:166:5930:-530.156,-46.6737,0	1/1:42:0,42:0:0:42:1504:-135.646,-12.6433,0	0/1:348:184,163:184:6585:163:5802:-416.807,0,-487.911	0/1:118:72,46:72:2553:46:1644:-112.722,0,-194.498	0/1:169:93,76:93:3344:76:2708:-193.084,0,-250.3	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:27:0,27:0:0:27:964:-87.0676,-8.12781,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.135	1/1:6:0,5:0:0:5:180:-16.1839,-1.50515,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:226:112,114:112:4007:114:4075:-298.844,0,-292.785	1/1:123:0,123:0:0:123:4402:-396.313,-37.0267,0	0/1:84:45,39:45:1620:39:1391:-100.198,0,-120.803	.:.:.:.:.:.:.:.	1/1:174:0,173:0:0:173:6170:-555.031,-52.0782,0	1/1:41:0,41:0:0:41:1463:-131.958,-12.3422,0	0/1:178:82,96:82:2936:96:3413:-253.719,0,-210.889	0/1:82:35,47:35:1244:47:1683:-126.912,0,-87.5802	0/1:73:43,30:43:1548:30:1067:-74.366,0,-117.638	1/1:113:0,113:0:0:113:4049:-364.578,-34.0164,0	0/1:112:61,51:61:2196:51:1824:-130.718,0,-164.19	1/1:198:1,197:1:36:197:7060:-631.82,-56.0057,0	1/1:171:0,171:0:0:171:6109:-549.9,-51.4761,0	0/1:158:87,71:87:3117:71:2540:-181.281,0,-233.192	1/1:194:0,194:0:0:194:6940:-624.581,-58.3998,0	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	1/1:156:0,155:0:0:155:5548:-499.003,-46.6597,0	0/1:72:42,30:42:1497:30:1042:-72.4022,0,-113.348	0/1:30:11,19:11:392:19:680:-52.4983,0,-26.5892	0/1:152:105,47:105:3745:47:1672:-105,0,-291.423	1/1:77:1,76:1:36:76:2696:-239.273,-19.581,0	0/1:10:5,5:5:180:5:176:-13.1743,0,-13.5418	1/1:16:0,16:0:0:16:568:-51.451,-4.81648,0	0/1:104:50,54:50:1796:54:1920:-141.77,0,-130.615	1/1:84:3,81:3:108:81:2899:-251.058,-15.2114,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:148:1,147:1:36:147:5241:-468.203,-40.9542,0	1/1:196:1,194:1:36:194:6928:-619.915,-55.4624,0	0/1:64:32,32:32:1148:32:1144:-83.999,0,-84.3639	1/1:106:0,106:0:0:106:3762:-338.746,-31.9092,0	1/1:232:2,230:2:72:230:8199:-730.864,-63.0022,0	1/1:158:1,157:1:36:157:5624:-502.67,-43.9645,0	1/1:34:0,34:0:0:34:1212:-109.375,-10.235,0	1/1:99:0,99:0:0:99:3548:-319.264,-29.802,0	1/1:81:0,81:0:0:81:2900:-261.227,-24.3834,0	0/1:21:12,9:12:428:9:324:-23.1819,0,-32.5372	0/1:160:92,68:92:3289:68:2440:-171.642,0,-248.063	0/1:67:45,22:45:1601:22:788:-51.0226,0,-124.209	0/1:306:146,160:146:5252:160:5714:-422.233,0,-380.569	1/1:214:0,214:0:0:214:7671:-690.4,-64.4204,0	1/1:89:0,89:0:0:89:3173:-285.78,-26.7917,0	1/1:104:0,103:0:0:103:3682:-331.312,-31.0061,0	0/1:5:2,3:2:68:3:104:-8.19766,0,-4.95256	1/1:173:0,173:0:0:173:6198:-557.865,-52.0782,0	1/1:108:0,108:0:0:108:3866:-348.109,-32.5112,0	1/1:338:0,338:0:0:338:12092:-1088.04,-101.748,0	0/1:131:71,60:71:2540:60:2120:-151.625,0,-189.416	1/1:62:0,62:0:0:62:2219:-199.971,-18.6639,0	0/1:92:53,39:53:1908:39:1392:-97.722,0,-144.303	0/1:129:68,61:68:2444:61:2176:-157.263,0,-181.368	0/1:48:27,21:27:972:21:748:-53.1926,0,-73.3378	1/1:68:0,68:0:0:68:2436:-219.479,-20.47,0	1/1:68:0,68:0:0:68:2431:-219.021,-20.47,0	0/1:41:22,19:22:788:19:684:-49.5419,0,-58.9026	0/1:92:45,47:45:1616:47:1692:-124.857,0,-118.035	0/1:61:39,22:39:1392:22:777:-51.8852,0,-107.216	1/1:100:0,100:0:0:100:3549:-319.57,-30.103,0	1/1:100:0,100:0:0:100:3584:-322.757,-30.103,0
chr06	6224833	.	C	G	60552.2	PASS	AB=0.447665;ABP=47.3314;AC=137;AF=0.728723;AN=188;AO=2898;CIGAR=1X;DP=3941;DPB=3941;DPRA=18.5275;EPP=6295.94;EPPR=2263.51;GTI=1;LEN=1;MEANALT=1.02198;MQM=59.9365;MQMR=60;NS=94;NUMALT=1;ODDS=0.2884;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103370;QR=37008;RO=1041;RPL=2898;RPP=6295.94;RPPR=2263.51;RPR=0;RUN=1;SAF=2898;SAP=6295.94;SAR=0;SRF=1041;SRP=2263.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:19,16:19:671:16:572:-41.1899,0,-50.1797	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3601	0/1:61:31,30:31:1116:30:1063:-77.618,0,-82.3889	1/1:61:0,60:0:0:60:2124:-191.178,-18.0618,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:34:0,34:0:0:34:1199:-108.214,-10.235,0	0/1:43:19,24:19:665:24:860:-64.7775,0,-47.2285	0/1:50:37,13:37:1320:13:468:-27.4048,0,-104.05	0/1:54:33,21:33:1184:21:733:-50.034,0,-90.6127	0/1:22:13,9:13:460:9:320:-22.5197,0,-35.1127	1/1:51:0,51:0:0:51:1826:-164.621,-15.3525,0	0/1:46:28,18:28:1000:18:644:-44.4423,0,-76.468	0/1:27:16,11:16:559:11:396:-27.8549,0,-42.5098	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/1:37:12,25:12:432:25:892:-69.4616,0,-28.0831	0/1:19:7,12:7:239:12:422:-32.595,0,-16.1231	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:22:1,21:1:36:21:744:-63.6861,-3.02439,0	0/1:69:37,32:37:1317:32:1148:-82.8588,0,-98.0588	0/1:60:33,27:33:1157:27:948:-67.5709,0,-86.3727	1/1:16:0,16:0:0:16:568:-51.4437,-4.81648,0	0/1:36:27,9:27:951:9:313:-17.668,0,-75.0672	0/1:28:21,7:21:733:7:252:-14.6001,0,-57.8608	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	1/1:146:1,145:1:36:145:5180:-462.739,-40.3521,0	1/1:114:0,114:0:0:114:4074:-366.845,-34.3174,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:99:45,54:45:1616:54:1922:-143.45,0,-115.928	0/1:64:35,29:35:1256:29:1040:-74.6484,0,-94.0794	0/1:39:14,25:14:500:25:881:-67.8657,0,-33.596	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	0/1:118:51,67:51:1814:67:2404:-181.095,0,-128.018	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	0/1:24:7,17:7:244:17:612:-48.1887,0,-15.0747	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:100:0,100:0:0:100:3572:-321.674,-30.103,0	1/1:21:0,21:0:0:21:739:-66.8324,-6.32163,0	0/1:64:52,12:52:1864:12:432:-19.9553,0,-148.774	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:27:14,13:14:495:13:446:-32.3386,0,-36.7552	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:35:22,13:22:788:13:468:-31.9236,0,-60.7087	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:36:0,36:0:0:36:1280:-115.502,-10.8371,0	0/1:54:28,26:28:987:26:936:-68.3038,0,-72.8874	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	1/1:117:0,117:0:0:117:4187:-377.011,-35.2205,0	0/1:41:23,18:23:809:18:644:-45.9484,0,-60.7861	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:64:34,30:34:1195:30:1076:-77.8869,0,-88.5886	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:47:23,24:23:807:24:860:-63.5734,0,-58.8008	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:98:0,98:0:0:98:3492:-314.49,-29.5009,0	1/1:88:0,88:0:0:88:3158:-284.444,-26.4906,0	0/1:43:22,21:22:769:21:752:-55.062,0,-56.5843	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:62:1,61:1:36:61:2160:-191.061,-15.0656,0	1/1:69:1,68:1:36:68:2423:-214.727,-17.1728,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:21:0,21:0:0:21:737:-66.6506,-6.32163,0	1/1:43:0,43:0:0:43:1539:-138.802,-12.9443,0	0/1:13:6,7:6:216:7:239:-17.9293,0,-15.8771	0/1:95:55,40:55:1953:40:1428:-99.592,0,-147.446	0/1:45:33,12:33:1176:12:428:-25.3125,0,-92.6014	0/1:58:36,22:36:1288:22:774:-52.5194,0,-98.7638	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	1/1:20:0,19:0:0:19:684:-61.5305,-5.71957,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:74:0,74:0:0:74:2655:-239.196,-22.2762,0	0/1:29:18,11:18:640:11:396:-27.2529,0,-49.1994	1/1:30:0,30:0:0:30:1049:-94.7182,-9.0309,0	0/1:28:16,12:16:576:12:414:-29.1607,0,-43.7461	0/1:61:33,28:33:1171:28:1000:-71.9525,0,-87.3338	0/1:21:8,13:8:280:13:468:-36.138,0,-19.2177	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:34:0,34:0:0:34:1203:-108.575,-10.235,0	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	0/1:47:23,24:23:816:24:856:-63.2127,0,-59.6133	0/1:35:28,7:28:1004:7:252:-12.4929,0,-80.1398	1/1:97:1,96:1:36:96:3418:-304.231,-25.6016,0	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0
chr06	6225059	.	G	A	113903	PASS	AB=0.420752;ABP=251.157;AC=139;AF=0.739362;AN=188;AO=5591;CIGAR=1X;DP=8243;DPB=8243;DPRA=0;EPP=12143.7;EPPR=5755.24;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9746;MQMR=60;NS=94;NUMALT=1;ODDS=3.27574;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199126;QR=91909;RO=2649;RPL=1;RPP=12135;RPPR=5755.24;RPR=5590;RUN=1;SAF=1;SAP=12135;SAR=5590;SRF=0;SRP=5755.24;SRR=2649;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:13,15:13:427:15:531:-39.6931,0,-30.3154	0/1:104:67,37:67:2364:37:1320:-87.7948,0,-181.71	0/1:101:65,36:65:2293:36:1271:-84.2881,0,-176.227	1/1:127:0,127:0:0:127:4512:-406.251,-38.2308,0	1/1:30:0,30:0:0:30:1063:-95.9808,-9.0309,0	1/1:45:1,44:1:36:44:1555:-136.643,-9.94808,0	1/1:99:0,99:0:0:99:3521:-317.1,-29.802,0	0/1:165:85,80:85:2881:80:2868:-208.687,0,-209.855	0/1:84:59,25:59:2028:25:892:-55.3132,0,-157.502	0/1:80:52,28:52:1794:28:1000:-66.233,0,-137.655	0/1:134:62,72:62:2171:72:2573:-191.481,0,-155.316	1/1:87:0,87:0:0:87:3087:-278.059,-26.1896,0	0/1:66:29,37:29:983:37:1324:-99.5941,0,-68.9066	0/1:131:67,64:67:2347:64:2271:-165.215,0,-172.056	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	0/1:65:30,35:30:1064:35:1229:-91.3447,0,-76.5047	0/1:99:57,42:57:1978:42:1504:-105.808,0,-148.489	1/1:85:2,83:2:68:83:2958:-259.995,-19.1298,0	1/1:57:0,57:0:0:57:2039:-183.781,-17.1587,0	0/1:132:78,54:78:2683:54:1923:-133.61,0,-201.977	0/1:147:91,56:91:3134:56:1989:-135.031,0,-238.038	1/1:56:1,55:1:36:55:1967:-173.706,-13.2594,0	0/1:68:41,27:41:1443:27:964:-66.6068,0,-109.695	0/1:99:59,39:59:2058:39:1392:-95.7572,0,-155.667	0/1:52:28,24:28:992:24:860:-62.0683,0,-73.9408	1/1:238:1,237:1:36:237:8406:-752.952,-68.0469,0	1/1:109:0,109:0:0:109:3900:-351.193,-32.8123,0	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	0/1:174:114,60:114:3970:60:2152:-141.568,0,-305.114	0/1:138:105,33:105:3654:33:1175:-64.5086,0,-287.525	0/1:121:74,47:74:2603:47:1667:-113.891,0,-198.093	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:5:4,1:4:135:1:36:-2.09312,0,-10.9774	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	1/1:19:0,19:0:0:19:668:-60.4457,-5.71957,0	0/1:183:87,95:87:3010:95:3386:-249.918,0,-216.094	1/1:180:0,180:0:0:180:6415:-577.441,-54.1854,0	0/1:134:58,76:58:1960:76:2720:-204.705,0,-136.334	0/1:5:3,2:3:104:2:64:-4.57354,0,-8.19766	1/1:73:0,73:0:0:73:2609:-235.058,-21.9752,0	1/1:60:0,60:0:0:60:2130:-191.967,-18.0618,0	0/1:100:68,32:68:2392:32:1127:-71.6327,0,-185.436	0/1:74:38,36:38:1328:36:1283:-93.2252,0,-97.5407	0/1:54:36,18:36:1246:18:648:-42.3963,0,-96.1846	1/1:104:0,104:0:0:104:3717:-334.73,-31.3071,0	0/1:92:61,31:61:2106:31:1108:-72.3362,0,-162.112	1/1:115:0,115:0:0:115:4089:-368.198,-34.6185,0	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	0/1:110:71,39:71:2457:39:1400:-93.1859,0,-188.271	1/1:121:2,119:2:72:119:4260:-376.741,-29.5879,0	0/1:25:6,19:6:208:19:675:-53.5512,0,-11.5333	1/1:113:0,113:0:0:113:4040:-363.788,-34.0164,0	0/1:52:38,14:38:1322:14:496:-29.3207,0,-103.624	0/1:44:17,27:17:591:27:968:-74.192,0,-40.2699	0/1:95:77,18:77:2668:18:640:-29.3315,0,-211.768	1/1:42:0,42:0:0:42:1492:-134.575,-12.6433,0	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	1/1:38:0,38:0:0:38:1343:-121.169,-11.4391,0	0/1:118:71,47:71:2483:47:1666:-114.69,0,-188.201	1/1:139:1,138:1:36:138:4923:-439.622,-38.2449,0	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	1/1:85:0,85:0:0:85:3040:-273.828,-25.5876,0	1/1:113:3,110:3:108:110:3887:-339.949,-23.9412,0	0/1:95:57,38:57:1975:38:1364:-94.4629,0,-149.424	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:138:1,137:1:32:137:4860:-434.33,-38.3428,0	1/1:73:0,73:0:0:73:2596:-233.888,-21.9752,0	1/1:53:0,53:0:0:53:1877:-169.207,-15.9546,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:103:0,103:0:0:103:3670:-330.504,-31.0061,0	0/1:43:21,22:21:729:22:776:-57.2179,0,-52.9844	0/1:152:87,65:87:3013:65:2328:-164.023,0,-225.644	0/1:86:46,40:46:1596:40:1389:-99.4131,0,-118.038	0/1:245:149,95:149:5236:95:3382:-230.783,0,-397.573	1/1:60:2,58:2:68:58:2068:-179.933,-11.6041,0	1/1:78:0,78:0:0:78:2778:-250.215,-23.4803,0	1/1:146:2,144:2:63:144:5085:-451.811,-37.9672,0	0/1:30:16,14:16:576:14:485:-34.9461,0,-43.1441	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:122:0,122:0:0:122:4367:-393.203,-36.7257,0	0/1:92:51,41:51:1764:41:1464:-104.361,0,-131.343	1/1:78:1,77:1:36:77:2755:-244.593,-19.8821,0	0/1:85:49,36:49:1648:36:1245:-86.7594,0,-123.011	0/1:151:92,59:92:3112:59:2099:-143.724,0,-234.853	0/1:37:21,16:21:740:16:572:-40.6753,0,-55.7853	1/1:117:0,117:0:0:117:4183:-376.652,-35.2205,0	1/1:64:0,64:0:0:64:2278:-205.281,-19.2659,0	0/1:108:53,55:53:1831:55:1958:-143.984,0,-132.556	0/1:240:111,129:111:3863:129:4618:-343.535,0,-275.62	0/1:65:42,23:42:1434:23:819:-54.4646,0,-109.783	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:91:0,91:0:0:91:3236:-291.461,-27.3937,0
chr06	6240899	.	T	C	96887.6	PASS	AB=0.449175;ABP=77.8372;AC=139;AF=0.739362;AN=188;AO=4819;CIGAR=1X;DP=6679;DPB=6679;DPRA=18.1277;EPP=10467.3;EPPR=4028.92;GTI=2;LEN=1;MEANALT=1.06522;MQM=59.9556;MQMR=59.2621;NS=94;NUMALT=1;ODDS=0.139727;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168122;QR=66220;RO=1854;RPL=4818;RPP=10458.7;RPPR=4028.92;RPR=1;RUN=1;SAF=4818;SAP=10458.7;SAR=1;SRF=1854;SRP=4028.92;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:18,12:18:614:12:398:-27.1059,0,-46.5364	0/1:70:39,31:39:1378:31:1083:-76.7032,0,-103.207	0/1:90:47,43:47:1680:43:1507:-108.736,0,-123.647	1/1:176:0,176:0:0:176:6174:-555.763,-52.9813,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:14:0,14:0:0:14:462:-41.8939,-4.21442,0	1/1:78:0,78:0:0:78:2721:-245.132,-23.4803,0	0/1:80:48,31:48:1724:31:1076:-73.0181,0,-131.212	0/1:112:71,41:71:2529:41:1464:-98.3403,0,-193.952	0/1:54:21,33:21:756:33:1146:-87.1886,0,-52.094	0/1:44:20,24:20:712:24:843:-62.9427,0,-50.772	1/1:101:0,101:0:0:101:3410:-307.118,-30.404,0	0/1:83:49,34:49:1756:34:1182:-81.6975,0,-133.311	0/1:49:27,22:27:955:22:774:-55.2294,0,-71.5144	1/1:55:0,55:0:0:55:1904:-171.635,-16.5567,0	0/1:53:25,28:25:900:28:979:-72.4675,0,-65.338	0/1:24:13,11:13:468:11:384:-27.67,0,-35.1791	1/1:22:0,22:0:0:22:771:-69.7103,-6.62266,0	1/1:26:0,26:0:0:26:912:-82.3959,-7.82678,0	0/1:114:62,51:62:2228:51:1802:-128.084,0,-166.274	0/1:137:77,60:77:2725:60:2118:-149.647,0,-204.239	1/1:77:1,76:1:36:76:2638:-234.067,-19.581,0	0/1:77:41,36:41:1468:36:1221:-86.9916,0,-109.218	0/1:20:7,13:7:252:13:460:-35.7148,0,-17.0084	0/1:79:48,31:48:1720:31:1042:-70.2968,0,-131.264	1/1:206:2,204:2:72:204:7188:-640.143,-55.1755,0	1/1:229:3,226:3:108:226:7854:-696.835,-58.8717,0	1/1:38:0,38:0:0:38:1302:-117.476,-11.4391,0	0/1:160:81,79:81:2904:79:2779:-202.186,0,-213.422	0/1:112:63,49:63:2268:49:1695:-119.08,0,-170.343	0/1:97:48,49:48:1720:49:1725:-126.333,0,-125.638	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5458,-1.50515,0	0/1:15:9,6:9:320:6:207:-14.4514,0,-24.6269	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:208:98,109:98:3508:109:3833:-282.535,0,-253.253	1/1:82:1,81:1:36:81:2866:-254.58,-21.0862,0	0/1:45:24,21:24:849:21:702:-49.9463,0,-63.1815	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	1/1:95:0,95:0:0:95:3345:-301.267,-28.5979,0	1/1:26:0,26:0:0:26:900:-81.3113,-7.82678,0	0/1:86:43,43:43:1536:43:1487:-108.228,0,-112.555	0/1:42:25,17:25:900:17:600:-41.6859,0,-68.5561	0/1:69:45,24:45:1616:24:793:-50.9036,0,-124.941	1/1:97:0,97:0:0:97:3393:-305.587,-29.1999,0	0/1:107:55,52:55:1980:52:1812:-131.144,0,-146.162	1/1:90:0,89:0:0:89:3051:-274.458,-26.7917,0	1/1:79:0,79:0:0:79:2756:-248.281,-23.7814,0	0/1:85:51,34:51:1828:34:1203:-82.9875,0,-139.155	1/1:48:0,48:0:0:48:1698:-153.105,-14.4494,0	0/1:10:1,9:1:36:9:309:-25.1304,0,-0.587975	1/1:110:0,110:0:0:110:3854:-347.058,-33.1133,0	0/1:43:25,18:25:892:18:644:-45.3463,0,-67.6325	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:122:72,50:72:2584:50:1733:-119.524,0,-196.02	1/1:34:0,34:0:0:34:1170:-105.6,-10.235,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:8:0,8:0:0:8:260:-23.7163,-2.40824,0	0/1:93:59,34:59:2116:34:1212:-81.3905,0,-162.544	1/1:68:0,68:0:0:68:2378:-214.279,-20.47,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:103:1,102:1:36:102:3535:-314.759,-27.4078,0	1/1:128:5,123:5:176:123:4237:-365.326,-22.3468,0	0/1:51:22,29:22:780:29:1023:-77.0176,0,-55.1705	1/1:59:0,59:0:0:59:2093:-188.638,-17.7608,0	1/1:126:0,126:0:0:126:4406:-396.7,-37.9298,0	1/1:90:0,90:0:0:90:3173:-285.797,-27.0927,0	1/1:26:0,26:0:0:26:901:-81.3846,-7.82678,0	1/1:33:0,33:0:0:33:1157:-104.434,-9.93399,0	1/1:40:0,40:0:0:40:1415:-127.647,-12.0412,0	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/1:115:68,47:68:2417:47:1613:-110.828,0,-182.973	0/1:151:85,66:85:3022:66:2305:-162.253,0,-226.673	0/1:114:72,42:72:2567:42:1484:-99.5343,0,-196.713	1/1:119:0,119:0:0:119:4161:-374.676,-35.8226,0	1/1:58:0,58:0:0:58:1985:-178.918,-17.4597,0	1/1:66:0,66:0:0:66:2316:-208.699,-19.868,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:72:1,71:1:36:71:2509:-222.464,-18.0759,0	1/1:92:0,92:0:0:92:3237:-291.551,-27.6948,0	1/1:140:0,140:0:0:140:4888:-440.079,-42.1442,0	0/1:49:24,24:24:864:24:774:-55.1992,0,-63.3111	1/1:68:0,68:0:0:68:2365:-213.109,-20.47,0	0/1:46:26,20:26:924:20:703:-49.7461,0,-69.6055	0/1:133:72,61:72:2588:61:2119:-150.937,0,-193.109	0/1:29:13,15:13:464:15:529:-39.2546,0,-33.3022	1/1:63:0,63:0:0:63:2196:-197.904,-18.9649,0	1/1:72:0,72:0:0:72:2522:-227.233,-21.6742,0	0/1:26:15,11:15:536:11:377:-26.4312,0,-40.748	0/1:110:58,52:58:2049:52:1791:-128.354,0,-151.567	0/1:71:51,20:51:1810:20:700:-41.9503,0,-141.714	1/1:90:0,90:0:0:90:3143:-283.092,-27.0927,0	1/1:91:0,91:0:0:91:3201:-288.313,-27.3937,0
chr06	6240903	.	C	T	31876.3	PASS	AB=0.545157;ABP=62.6297;AC=49;AF=0.260638;AN=188;AO=1855;CIGAR=1X;DP=6778;DPB=6778;DPRA=1.26595;EPP=4031.09;EPPR=10686.7;GTI=2;LEN=1;MEANALT=1.01852;MQM=59.2631;MQMR=59.9524;NS=94;NUMALT=1;ODDS=0.803518;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66418;QR=175485;RO=4920;RPL=1855;RPP=4031.09;RPPR=10669.3;RPR=0;RUN=1;SAF=1855;SAP=4031.09;SAR=0;SRF=4918;SRP=10669.3;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:12,18:12:428:18:648:-49.3927,0,-29.8279	0/1:70:31,39:31:1116:39:1400:-104.999,0,-79.6796	0/1:92:43,49:43:1511:49:1721:-126.319,0,-108.588	0/0:178:178,0:178:6350:0:0:0,-53.5833,-571.502	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4824	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:81:31,50:31:1112:50:1780:-135.955,0,-76.0079	0/1:111:41,70:41:1467:70:2497:-191.362,0,-98.911	0/1:55:34,21:34:1224:21:756:-51.7929,0,-93.9104	0/1:44:25,19:25:892:19:672:-47.4732,0,-67.3544	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/1:85:36,49:36:1292:49:1760:-133.042,0,-90.9962	0/1:49:21,28:21:752:28:984:-74.1198,0,-53.2558	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/1:53:28,25:28:1004:25:885:-63.9835,0,-74.7213	0/1:24:11,13:11:392:13:468:-35.1791,0,-28.3953	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:112:51,61:51:1819:61:2196:-164.092,0,-130.275	0/1:138:63,75:63:2251:75:2692:-200.982,0,-161.31	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:79:37,41:37:1319:41:1468:-108.657,0,-95.2699	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.439	0/1:81:33,48:33:1168:48:1715:-130.178,0,-80.8152	0/0:212:210,2:210:7529:2:72:0,-56.9816,-670.764	0/0:232:230,2:230:8142:2:72:0,-63.0134,-725.974	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:167:83,84:83:2963:84:3016:-221.39,0,-216.631	0/1:111:48,63:48:1712:63:2256:-169.567,0,-120.864	0/1:99:49,50:49:1760:50:1792:-131.484,0,-128.882	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5458	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:212:113,99:113:4019:99:3560:-256.744,0,-298.082	0/0:81:80,1:80:2863:1:36:0,-20.7852,-254.308	0/1:46:22,24:22:779:24:860:-63.8745,0,-56.5847	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:96:96,0:96:3435:0:0:0,-28.8989,-309.363	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:84:42,42:42:1497:42:1512:-110.999,0,-109.736	0/1:43:18,25:18:635:25:900:-68.2551,0,-44.5327	0/1:70:25,45:25:896:45:1620:-125,0,-59.8883	0/0:98:98,0:98:3435:0:0:0,-29.5009,-309.361	0/1:109:54,55:54:1936:55:1961:-143.85,0,-141.703	0/0:93:93,0:93:3304:0:0:0,-27.9958,-297.574	0/0:79:79,0:79:2801:0:0:0,-23.7814,-252.322	0/1:88:36,52:36:1278:52:1860:-141.131,0,-88.831	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:114:114,0:114:4079:0:0:0,-34.3174,-367.296	0/1:44:18,26:18:644:26:936:-71.2787,0,-45.0453	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:122:50,72:50:1788:72:2583:-195.93,0,-124.471	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/1:94:36,58:36:1296:58:2080:-159.006,0,-88.6471	0/0:68:67,1:67:2404:1:35:0,-16.9714,-213.118	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:108:107,1:107:3799:1:36:0,-28.913,-338.508	0/0:129:125,4:125:4461:4:144:0,-25.5193,-388.342	0/1:51:29,22:29:1040:22:788:-55.8923,0,-78.5334	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:133:132,0:132:4687:0:0:0,-39.736,-421.709	0/0:91:90,0:90:3219:0:0:0,-27.0927,-289.631	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.0994	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/1:25:14,11:14:495:11:396:-28.457,0,-37.3573	0/1:116:48,68:48:1716:68:2431:-183.832,0,-119.802	0/1:148:63,85:63:2226:85:3039:-229.105,0,-156.048	0/1:112:43,69:43:1523:69:2480:-189.483,0,-103.647	0/0:122:122,0:122:4346:0:0:0,-36.7257,-391.316	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.102	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.251	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:72:71,1:71:2544:1:36:0,-18.0759,-225.612	0/0:96:96,0:96:3422:0:0:0,-28.8989,-308.194	0/0:142:142,0:142:5068:0:0:0,-42.7463,-456.264	0/1:51:26,25:26:915:25:895:-65.5012,0,-67.313	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/1:49:23,26:23:828:26:936:-69.7737,0,-60.0936	0/1:133:62,71:62:2197:71:2540:-188.809,0,-157.957	0/1:27:14,13:14:500:13:455:-33.0758,0,-37.2084	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.864	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/1:26:11,15:11:392:15:540:-41.1098,0,-27.7933	0/1:113:55,58:55:1959:58:2073:-152.812,0,-142.568	0/1:72:21,51:21:756:51:1828:-143.033,0,-46.6931	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.75	0/0:93:93,0:93:3327:0:0:0,-27.9958,-299.157
chr06	6240906	.	T	C	101394	PASS	AB=0.487572;ABP=7.22038;AC=139;AF=0.739362;AN=188;AO=4898;CIGAR=1X;DP=6531;DPB=6531;DPRA=20.2609;EPP=10638.9;EPPR=3540.34;GTI=2;LEN=1;MEANALT=1.03261;MQM=59.9473;MQMR=59.337;NS=94;NUMALT=1;ODDS=0.279697;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173159;QR=53505;RO=1629;RPL=4896;RPP=10621.5;RPPR=3540.34;RPR=2;RUN=1;SAF=4896;SAP=10621.5;SAR=2;SRF=1629;SRP=3540.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:12,11:12:394:11:396:-29.0591,0,-28.8533	0/1:64:33,31:33:1126:31:1108:-80.7651,0,-82.1489	0/1:90:46,44:46:1555:44:1551:-112.788,0,-112.073	1/1:177:0,177:0:0:177:6254:-562.941,-53.2823,0	1/1:23:0,23:0:0:23:820:-74.1222,-6.92369,0	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:79:0,79:0:0:79:2769:-249.45,-23.7814,0	0/1:77:45,32:45:1504:32:1132:-79.0093,0,-112.402	0/1:103:62,41:62:2024:41:1464:-101.05,0,-151.244	0/1:52:18,34:18:596:34:1193:-92.0196,0,-38.281	0/1:42:17,25:17:579:25:856:-64.7077,0,-39.596	1/1:103:0,103:0:0:103:3591:-323.399,-31.0061,0	0/1:82:46,36:46:1464:36:1271:-90.0076,0,-107.35	0/1:44:22,22:22:687:22:774:-56.7345,0,-48.8805	1/1:56:0,56:0:0:56:1950:-175.772,-16.8577,0	0/1:52:23,29:23:735:29:1024:-76.819,0,-50.7866	0/1:24:13,11:13:413:11:396:-28.758,0,-30.2304	1/1:22:0,22:0:0:22:782:-70.7036,-6.62266,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	0/1:105:54,51:54:1795:51:1816:-132.113,0,-130.185	0/1:130:69,61:69:2202:61:2167:-156.163,0,-159.311	1/1:77:1,76:1:36:76:2683:-238.115,-19.581,0	0/1:76:38,38:38:1280:38:1349:-98.8152,0,-92.599	0/1:19:6,13:6:199:13:455:-35.5624,0,-12.5159	0/1:66:34,32:34:1144:32:1128:-81.9603,0,-83.3874	1/1:207:2,205:2:63:205:7267:-648.077,-56.3301,0	1/1:231:1,229:1:32:229:8080:-724.009,-66.3775,0	1/1:38:0,38:0:0:38:1347:-121.529,-11.4391,0	0/1:150:70,80:70:2270:80:2863:-212.752,0,-159.403	0/1:104:55,49:55:1823:49:1727:-124.369,0,-132.744	0/1:95:46,49:46:1509:49:1756:-129.726,0,-107.366	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	1/1:5:0,5:0:0:5:172:-15.8117,-1.50515,0	0/1:13:8,5:8:280:5:180:-12.6387,0,-21.6259	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:204:90,114:90:2929:114:4035:-301.929,0,-202.441	1/1:82:1,81:1:36:81:2864:-254.399,-21.0862,0	0/1:44:23,21:23:755:21:725:-52.3224,0,-55.0104	0/0:2:2,0:2:59:0:0:0,-0.60206,-5.60414	1/1:96:0,96:0:0:96:3366:-303.155,-28.8989,0	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	0/1:83:41,42:41:1373:42:1482:-108.688,0,-98.7893	0/1:41:23,18:23:750:18:639:-45.496,0,-55.4419	0/1:65:40,25:40:1348:25:892:-61.0151,0,-102.046	1/1:99:0,99:0:0:99:3497:-314.94,-29.802,0	0/1:98:44,54:44:1467:54:1936:-145.014,0,-102.754	1/1:93:0,93:0:0:93:3293:-296.58,-27.9958,0	1/1:80:0,80:0:0:80:2829:-254.847,-24.0824,0	0/1:82:47,35:47:1580:35:1252:-88.3006,0,-117.772	1/1:52:1,51:1:36:51:1798:-158.502,-12.0553,0	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	1/1:113:0,111:0:0:111:3963:-356.546,-33.4143,0	0/1:43:24,19:24:806:19:676:-48.2237,0,-59.8819	0/0:5:5,0:5:164:0:0:0,-1.50515,-15.0839	0/1:113:61,52:61:1989:52:1843:-132.119,0,-145.228	1/1:34:0,34:0:0:34:1181:-106.59,-10.235,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:89:53,36:53:1720:36:1277:-88.4394,0,-128.175	1/1:69:0,69:0:0:69:2445:-220.305,-20.7711,0	0/1:2:1,1:1:32:1:32:-2.59725,0,-2.59725	1/1:107:1,106:1:36:106:3752:-334.281,-28.6119,0	1/1:125:3,122:3:99:122:4275:-375.694,-28.3922,0	0/1:46:20,26:20:640:26:936:-70.6836,0,-44.0544	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:130:0,130:0:0:130:4601:-414.248,-39.1339,0	1/1:90:0,90:0:0:90:3194:-287.683,-27.0927,0	1/1:26:0,26:0:0:26:918:-82.9297,-7.82678,0	1/1:34:0,34:0:0:34:1194:-107.762,-10.235,0	1/1:41:0,41:0:0:41:1440:-129.893,-12.3422,0	0/1:23:9,14:9:299:14:492:-37.6887,0,-20.3095	0/1:100:53,47:53:1703:47:1642:-117.959,0,-123.23	0/1:141:74,67:74:2464:67:2367:-170.844,0,-179.52	0/1:103:61,42:61:1959:42:1466:-101.224,0,-145.489	1/1:122:0,122:0:0:122:4333:-390.147,-36.7257,0	1/1:56:0,56:0:0:56:2004:-180.625,-16.8577,0	1/1:69:0,69:0:0:69:2419:-217.962,-20.7711,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:73:2,71:2:72:71:2536:-221.655,-15.1385,0	1/1:96:0,96:0:0:96:3391:-305.407,-28.8989,0	1/1:140:0,140:0:0:140:4941:-444.844,-42.1442,0	0/1:48:23,25:23:739:25:859:-63.174,0,-52.356	1/1:69:0,69:0:0:69:2449:-220.664,-20.7711,0	0/1:44:21,23:21:682:23:807:-59.7038,0,-48.4219	0/1:124:62,62:62:2025:62:2186:-159.678,0,-145.19	0/1:29:13,16:13:401:16:550:-41.0845,0,-27.6063	1/1:67:2,65:2:68:65:2308:-201.524,-13.7113,0	1/1:72:0,72:0:0:72:2538:-228.669,-21.6742,0	0/1:24:12,12:12:381:12:420:-30.9093,0,-27.3737	0/1:100:46,54:46:1487:54:1904:-141.533,0,-104.012	0/1:68:47,21:47:1588:21:756:-47.8972,0,-122.693	1/1:89:0,88:0:0:88:3122:-280.996,-26.4906,0	1/1:94:0,94:0:0:94:3332:-299.607,-28.2968,0
chr06	6300077	.	A	G	32817.9	PASS	AB=0.525134;ABP=23.5313;AC=53;AF=0.281915;AN=188;AO=1980;CIGAR=1X;DP=8001;DPB=8001;DPRA=0.926848;EPP=4250.57;EPPR=13016.7;GTI=3;LEN=1;MEANALT=1.05455;MQM=59.952;MQMR=59.9751;NS=94;NUMALT=1;ODDS=1.22153;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69532;QR=212940;RO=6017;RPL=6;RPP=4250.57;RPPR=13016.7;RPR=1974;RUN=1;SAF=0;SAP=4302.53;SAR=1980;SRF=0;SRP=13068.8;SRR=6017;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:35,31:35:1239:31:1088:-78.3594,0,-91.9457	0/1:70:34,35:34:1220:35:1224:-89.4273,0,-89.0729	0/1:158:55,103:55:1953:103:3587:-275.473,0,-128.481	0/0:104:104,0:104:3677:0:0:0,-31.3071,-331.136	0/0:67:66,1:66:2352:1:36:0,-16.5707,-208.336	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/0:79:79,0:79:2775:0:0:0,-23.7814,-249.991	0/1:101:38,62:38:1328:62:2167:-164.979,0,-89.5001	0/1:95:36,59:36:1288:59:2056:-156.709,0,-87.6257	0/1:58:33,25:33:1154:25:872:-61.3347,0,-86.705	0/1:64:30,34:30:1067:34:1198:-88.8587,0,-77.0753	0/0:80:80,0:80:2790:0:0:0,-24.0824,-250.404	0/1:74:37,37:37:1315:37:1301:-95.1131,0,-96.3748	0/1:60:32,28:32:1131:28:1004:-72.6141,0,-84.036	0/0:79:79,0:79:2789:0:0:0,-23.7814,-251.251	0/1:55:25,30:25:858:30:1039:-77.259,0,-60.9759	0/1:27:14,13:14:488:13:456:-33.2454,0,-36.1226	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	0/1:133:58,75:58:2067:75:2675:-200.958,0,-146.263	0/1:154:64,90:64:2270:90:3153:-237.637,0,-158.203	0/0:140:140,0:140:4928:0:0:0,-42.1442,-443.675	0/1:107:51,56:51:1812:56:1973:-145.633,0,-131.151	0/1:71:36,35:36:1272:35:1228:-89.449,0,-93.4098	0/1:99:46,53:46:1601:53:1858:-137.695,0,-114.575	0/0:197:195,1:195:6914:1:32:0,-56.1225,-618.642	0/0:254:254,0:254:8952:0:0:0,-76.4616,-805.672	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:203:94,109:94:3313:109:3861:-286.577,0,-237.282	0/1:143:61,82:61:2155:82:2908:-218.907,0,-150.899	0/1:87:45,42:45:1587:42:1482:-107.483,0,-116.93	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:4,6:4:144:6:203:-15.5909,0,-10.3033	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6464	0/1:187:91,96:91:3250:96:3346:-245.067,0,-236.428	0/0:130:129,0:129:4546:0:0:0,-38.8329,-409.107	0/1:41:19,22:19:675:22:777:-57.9081,0,-48.7347	0/1:6:5,1:5:180:1:27:-0.893603,0,-14.7459	0/0:121:121,0:121:4282:0:0:0,-36.4246,-385.559	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:200:86,114:86:3031:114:3997:-299.713,0,-212.814	0/1:35:20,15:20:707:15:536:-38.0388,0,-53.4185	0/1:39:21,18:21:726:18:585:-41.2165,0,-53.9183	0/0:108:108,0:108:3812:0:0:0,-32.5112,-343.28	0/1:116:58,58:58:2039:58:2037:-148.111,0,-148.86	0/0:165:165,0:165:5840:0:0:0,-49.6699,-525.718	0/0:124:124,0:124:4381:0:0:0,-37.3277,-394.465	0/1:110:62,48:62:2177:48:1685:-118.822,0,-163.082	0/0:124:124,0:124:4397:0:0:0,-37.3277,-395.905	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/0:103:103,0:103:3648:0:0:0,-31.0061,-328.525	0/1:86:32,54:32:1127:54:1915:-146.739,0,-75.8489	0/1:11:3,8:3:104:8:288:-22.9561,0,-6.39148	0/1:136:58,78:58:2063:78:2734:-205.363,0,-144.871	0/0:63:63,0:63:2231:0:0:0,-18.9649,-201.054	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:84:36,48:36:1284:48:1690:-127.092,0,-90.5769	0/0:96:96,0:96:3388:0:0:0,-28.8989,-305.137	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:136:136,0:136:4829:0:0:0,-40.9401,-434.767	0/0:156:155,1:155:5520:1:36:0,-43.3624,-493.328	0/1:22:7,15:7:252:15:536:-41.9522,0,-16.4063	0/0:53:53,0:53:1878:0:0:0,-15.9546,-169.297	0/0:203:203,0:203:7154:0:0:0,-61.1091,-643.926	0/0:136:136,0:136:4829:0:0:0,-40.9401,-434.767	0/1:19:16,3:16:561:3:104:-3.98324,0,-45.0976	0/0:64:63,1:63:2239:1:36:0,-15.6676,-198.175	0/0:41:41,0:41:1428:0:0:0,-12.3422,-128.813	0/1:15:10,5:10:360:5:173:-11.3939,0,-28.2289	0/1:147:83,64:83:2920:64:2245:-158.06,0,-218.784	0/1:113:60,53:60:2106:53:1874:-134.921,0,-155.792	0/1:87:51,36:51:1799:36:1249:-86.52,0,-136.002	0/0:188:187,1:187:6626:1:32:0,-53.3954,-593.226	0/0:160:160,0:160:5667:0:0:0,-48.1648,-510.151	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453	0/0:111:110,1:110:3903:1:36:0,-29.8251,-347.874	0/0:209:209,0:209:7466:0:0:0,-62.9153,-671.985	0/1:60:36,24:36:1270:24:856:-59.2993,0,-96.5395	0/0:62:62,0:62:2198:0:0:0,-18.6639,-198.085	0/1:33:12,21:12:428:21:717:-54.9116,0,-28.9248	0/1:116:69,47:69:2446:47:1656:-114.405,0,-185.475	0/1:21:14,7:14:496:7:252:-16.7073,0,-38.6526	0/0:61:61,0:61:2133:0:0:0,-18.3628,-192.192	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.349	0/1:33:19,14:19:680:14:496:-35.0403,0,-51.5952	0/1:106:51,55:51:1794:55:1933:-142.335,0,-129.832	0/1:82:27,55:27:956:55:1936:-149.83,0,-61.6713	0/0:100:100,0:100:3546:0:0:0,-30.103,-319.35	0/0:103:103,0:103:3661:0:0:0,-31.0061,-329.694
chr06	6422552	.	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chr06	6444768	.	T	A	62259.7	PASS	AB=0.582311;ABP=118.116;AC=139;AF=0.739362;AN=188;AO=2984;CIGAR=1X;DP=3813;DPB=3813;DPRA=13.7935;EPP=6482.68;EPPR=1800.99;GTI=2;LEN=1;MEANALT=1.01087;MQM=58.5989;MQMR=59.5507;NS=94;NUMALT=1;ODDS=2.30382;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106652;QR=29346;RO=828;RPL=2984;RPP=6482.68;RPPR=1800.99;RPR=0;RUN=1;SAF=0;SAP=6482.68;SAR=2984;SRF=0;SRP=1800.99;SRR=828;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:6,1:6:212:1:36:-1.49006,0,-17.3142	0/1:50:30,20:30:1053:20:720:-50.0037,0,-80.019	0/1:43:15,28:15:540:28:1000:-77.2902,0,-35.9889	1/1:61:0,61:0:0:61:2147:-193.412,-18.3628,0	1/1:9:0,9:0:0:9:320:-29.0967,-2.70927,0	1/1:9:0,9:0:0:9:324:-29.4976,-2.70927,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:46:12,34:12:432:34:1220:-96.1559,0,-25.3704	0/1:40:11,29:11:392:29:1044:-82.1626,0,-23.5789	0/1:48:22,26:22:788:26:921:-68.7102,0,-56.7892	0/1:40:20,20:20:705:20:720:-53.0876,0,-51.7316	1/1:84:0,84:0:0:84:3009:-270.613,-25.2865,0	0/1:51:24,27:24:852:27:953:-70.3361,0,-61.6378	0/1:74:28,46:28:996:46:1656:-126.951,0,-67.6337	1/1:52:0,52:0:0:52:1868:-168.338,-15.6536,0	0/1:48:23,25:23:809:25:900:-66.8707,0,-58.6702	0/1:31:12,19:12:428:19:684:-52.4721,0,-29.5269	1/1:39:0,39:0:0:39:1396:-125.722,-11.7402,0	1/1:20:0,20:0:0:20:716:-64.6795,-6.0206,0	0/1:10:4,6:4:129:6:216:-16.7802,0,-8.91736	0/1:79:34,45:34:1216:45:1593:-119.668,0,-85.6411	1/1:12:0,12:0:0:12:428:-37.8311,-3.61236,0	0/1:29:11,18:11:396:18:640:-49.0498,0,-27.2529	0/1:23:7,16:7:252:16:561:-43.8032,0,-16.1053	0/1:11:4,7:4:144:7:248:-19.3059,0,-10.0023	1/1:160:3,157:3:108:157:5569:-490.552,-38.0896,0	1/1:72:0,72:0:0:72:2558:-230.326,-21.6742,0	1/1:26:0,26:0:0:26:936:-84.434,-7.82678,0	0/1:49:19,30:19:669:30:1076:-82.3814,0,-45.7615	0/1:136:59,77:59:2078:77:2749:-205.175,0,-146.324	0/1:39:9,29:9:320:29:1025:-80.7687,0,-17.3797	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:10:0,10:0:0:10:356:-32.3803,-3.0103,0	1/1:6:0,6:0:0:6:201:-18.4124,-1.80618,0	0/1:6:3,3:3:104:3:104:-7.89437,0,-7.89663	1/1:5:0,5:0:0:5:180:-16.5474,-1.50515,0	0/1:142:50,92:50:1792:92:3300:-253.124,0,-118.807	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:37:13,24:13:464:24:857:-65.9035,0,-30.9594	0/0:3:3,0:3:89:0:0:0,-0.90309,-8.30436	1/1:26:0,26:0:0:26:932:-84.1539,-7.82678,0	1/1:26:0,26:0:0:26:936:-84.492,-7.82678,0	0/1:57:25,32:25:892:32:1148:-86.3803,0,-63.441	0/1:42:25,17:25:896:17:612:-42.7132,0,-68.3047	0/1:43:13,30:13:456:30:1078:-84.3275,0,-28.4142	1/1:42:0,42:0:0:42:1497:-134.98,-12.6433,0	0/1:39:22,17:22:788:17:597:-42.3023,0,-59.4937	1/1:66:0,66:0:0:66:2357:-212.352,-19.868,0	1/1:19:0,19:0:0:19:684:-61.6051,-5.71957,0	0/1:79:27,52:27:949:52:1852:-143.13,0,-61.9352	1/1:26:0,26:0:0:26:936:-84.5242,-7.82678,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:21:0,21:0:0:21:756:-68.3408,-6.32163,0	0/1:23:10,13:10:352:13:464:-35.1738,0,-25.0863	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:35:15,20:15:521:20:720:-54.5477,0,-36.6493	1/1:10:0,10:0:0:10:360:-32.687,-3.0103,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:51:21,30:21:748:30:1061:-80.3569,0,-52.2928	1/1:85:1,84:1:36:84:3016:-267.864,-21.9961,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:52:0,52:0:0:52:1842:-165.837,-15.6536,0	1/1:57:0,57:0:0:57:2029:-182.836,-17.1587,0	0/1:22:5,17:5:180:17:612:-48.5654,0,-9.9294	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:40:1,39:1:36:39:1392:-121.965,-8.44293,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:26:0,26:0:0:26:932:-84.1803,-7.82678,0	1/1:26:0,26:0:0:26:928:-83.3878,-7.82678,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0393	0/1:39:22,17:22:750:17:612:-43.5205,0,-56.0708	0/1:50:26,24:26:915:24:845:-61.2903,0,-67.6141	0/1:72:20,52:20:693:52:1868:-146.431,0,-41.015	1/1:47:1,46:1:36:46:1652:-145.257,-10.5501,0	1/1:25:0,25:0:0:25:896:-80.8003,-7.52575,0	1/1:99:0,99:0:0:99:3537:-317.601,-29.802,0	0/1:8:5,3:5:176:3:108:-7.66411,0,-13.7768	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:33:0,33:0:0:33:1173:-105.748,-9.93399,0	1/1:65:0,65:0:0:65:2328:-209.619,-19.567,0	0/1:43:22,21:22:792:21:752:-55.0335,0,-58.649	1/1:60:0,60:0:0:60:2160:-194.562,-18.0618,0	0/1:44:25,19:25:896:19:684:-48.645,0,-67.7146	0/1:78:32,46:32:1118:46:1633:-123.776,0,-77.4281	0/1:14:9,5:9:324:5:180:-12.333,0,-25.2914	1/1:55:0,55:0:0:55:1980:-178.217,-16.5567,0	1/1:60:0,60:0:0:60:2141:-192.636,-18.0618,0	0/1:30:13,17:13:464:17:608:-45.931,0,-33.0666	0/1:91:32,59:32:1144:59:2115:-162.677,0,-75.8696	0/1:36:22,14:22:788:14:504:-34.8587,0,-60.4015	1/1:47:0,47:0:0:47:1692:-152.465,-14.1484,0	1/1:77:0,77:0:0:77:2752:-247.845,-23.1793,0
chr06	6463022	.	T	C	85694.3	PASS	AB=0.441667;ABP=91.6788;AC=137;AF=0.736559;AN=186;AO=4084;CIGAR=1X;DP=5784;DPB=5784;DPRA=12.6901;EPP=8638.34;EPPR=3554.68;GTI=1;LEN=1;MEANALT=1.01099;MQM=59.9809;MQMR=59.9994;NS=93;NUMALT=1;ODDS=2.28483;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145833;QR=60967;RO=1699;RPL=27;RPP=8638.34;RPPR=3554.68;RPR=4057;RUN=1;SAF=4084;SAP=8871.3;SAR=0;SRF=1699;SRP=3692.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:117:64,53:64:2296:53:1896:-135.698,0,-171.681	0/1:46:26,20:26:928:20:701:-49.5592,0,-69.9909	1/1:80:0,80:0:0:80:2851:-256.828,-24.0824,0	1/1:34:2,32:2:72:32:1148:-96.7885,-3.3983,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:61:0,61:0:0:61:2165:-195.115,-18.3628,0	0/1:95:68,27:68:2444:27:964:-58.479,0,-191.617	0/1:61:27,34:27:963:34:1197:-89.6706,0,-68.6231	0/1:75:28,47:28:999:47:1680:-128.91,0,-67.6469	0/1:53:32,21:32:1152:21:756:-52.4126,0,-88.0356	1/1:70:0,70:0:0:70:2502:-225.432,-21.0721,0	0/1:85:41,44:41:1468:44:1576:-116.544,0,-106.829	0/1:71:33,38:33:1188:38:1351:-100.516,0,-85.8555	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	0/1:60:29,31:29:1040:31:1107:-81.8784,0,-75.8526	0/1:82:45,37:45:1620:37:1328:-95.1378,0,-121.406	1/1:74:1,73:1:36:73:2624:-232.809,-18.6779,0	1/1:51:0,51:0:0:51:1826:-164.621,-15.3525,0	0/1:76:49,27:49:1760:27:964:-64.1985,0,-135.806	0/1:152:90,62:90:3227:62:2223:-154.577,0,-244.894	1/1:29:1,28:1:36:28:1008:-87.4381,-5.1316,0	0/1:35:20,15:20:701:15:532:-37.677,0,-52.8757	0/1:25:18,7:18:644:7:252:-15.5032,0,-50.7648	0/1:41:29,12:29:1044:12:432:-26.879,0,-81.9326	1/1:147:0,147:0:0:147:5232:-470.991,-44.2514,0	1/1:121:0,121:0:0:121:4276:-385.02,-36.4246,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:174:112,62:112:4016:62:2211:-146.875,0,-309.249	0/1:72:51,21:51:1836:21:748:-45.9711,0,-143.846	1/1:63:0,63:0:0:63:2234:-201.323,-18.9649,0	1/1:136:0,136:0:0:136:4888:-440.07,-40.9401,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	.:.:.:.:.:.:.:.	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:23:0,23:0:0:23:811:-73.31,-6.92369,0	0/1:190:86,104:86:3088:104:3709:-276.815,0,-220.952	1/1:73:0,73:0:0:73:2584:-232.808,-21.9752,0	0/1:92:44,48:44:1571:48:1720:-127.391,0,-113.986	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:41:22,19:22:792:19:684:-49.5481,0,-59.2634	0/1:75:37,38:37:1332:38:1368:-100.844,0,-97.6051	0/1:58:30,28:30:1080:28:981:-71.1413,0,-80.0535	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:54:30,23:30:1068:23:809:-56.8151,0,-80.1178	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:34:0,34:0:0:34:1207:-108.935,-10.235,0	0/1:116:68,48:68:2440:48:1711:-119.356,0,-184.935	1/1:21:0,21:0:0:21:741:-67.0125,-6.32163,0	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	1/1:62:0,62:0:0:62:2210:-199.163,-18.6639,0	0/1:19:13,6:13:464:6:216:-14.0709,0,-36.3779	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:46:26,20:26:936:20:703:-49.7461,0,-70.7121	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:42:31,11:31:1116:11:388:-22.6141,0,-88.1084	1/1:101:0,101:0:0:101:3614:-325.464,-30.404,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:67:0,67:0:0:67:2408:-216.039,-20.169,0	1/1:124:6,118:6:216:118:4228:-360.909,-17.5372,0	0/1:64:39,25:39:1400:25:896:-61.6944,0,-107.033	1/1:23:1,22:1:36:22:792:-68.0074,-3.32542,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:60:0,60:0:0:60:2139:-192.777,-18.0618,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:87:0,87:0:0:87:3098:-279.047,-26.1896,0	0/1:21:14,7:14:495:7:248:-16.3426,0,-38.5614	0/1:65:42,23:42:1508:23:824:-54.9164,0,-116.448	0/1:50:34,16:34:1220:16:572:-36.7619,0,-95.0553	0/1:138:85,53:85:3056:53:1898:-129.556,0,-233.726	1/1:64:0,64:0:0:64:2287:-206.091,-19.2659,0	1/1:36:2,34:2:72:34:1202:-101.648,-4.00036,0	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	1/1:43:0,43:0:0:43:1523:-137.362,-12.9443,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:132:0,132:0:0:132:4705:-423.609,-39.736,0	0/1:86:36,50:36:1296:50:1776:-134.234,0,-91.0554	1/1:53:1,52:1:36:52:1859:-163.991,-12.3563,0	0/1:69:37,32:37:1332:32:1144:-82.4984,0,-99.4113	0/1:120:58,62:58:2075:62:2224:-164.301,0,-150.896	0/1:40:15,25:15:540:25:896:-68.9192,0,-36.8953	1/1:61:0,61:0:0:61:2169:-195.475,-18.3628,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:54:28,26:28:1000:26:932:-67.9432,0,-74.0598	0/1:95:41,54:41:1476:54:1931:-145.468,0,-104.538	0/1:71:50,21:50:1800:21:755:-46.9039,0,-140.909	1/1:54:0,54:0:0:54:1921:-173.165,-16.2556,0	1/1:110:1,109:1:36:109:3882:-345.977,-29.515,0
chr06	6513223	.	T	A	41562.6	PASS	AB=0.508033;ABP=5.59193;AC=51;AF=0.274194;AN=186;AO=2371;CIGAR=1X;DP=9945;DPB=9945;DPRA=0.908682;EPP=4826.8;EPPR=16423.7;GTI=3;LEN=1;MEANALT=1;MQM=59.3724;MQMR=48.0813;NS=93;NUMALT=1;ODDS=0.705325;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84721;QR=270240;RO=7574;RPL=2333;RPP=4826.8;RPPR=16423.7;RPR=38;RUN=1;SAF=0;SAP=5151.57;SAR=2371;SRF=0;SRP=16449.7;SRR=7574;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:27,17:27:968:17:604:-41.4453,0,-72.9428	0/1:97:32,65:32:1152:65:2328:-180.569,0,-72.4679	0/1:190:116,74:116:4148:74:2636:-180.273,0,-309.904	0/0:277:277,0:277:9892:0:0:0,-83.3853,-877.016	0/0:88:88,0:88:3133:0:0:0,-26.4906,-279.741	0/0:35:35,0:35:1252:0:0:0,-10.536,-110.968	0/0:93:92,1:92:3250:1:36:0,-24.3975,-285.722	0/1:305:155,150:155:5540:150:5342:-389.023,0,-397.422	0/1:128:71,57:71:2544:57:2026:-143.475,0,-185.958	0/1:108:54,54:54:1917:54:1932:-141.615,0,-138.098	0/1:52:25,27:25:892:27:972:-72.1306,0,-64.6241	0/0:99:99,0:99:3537:0:0:0,-29.802,-312.166	0/1:66:31,35:31:1097:35:1236:-91.6654,0,-77.5744	0/1:39:17,22:17:612:22:792:-59.8621,0,-42.2883	0/0:87:87,0:87:3108:0:0:0,-26.1896,-278.367	0/1:64:38,26:38:1368:26:925:-63.9906,0,-101.799	0/1:29:16,13:16:576:13:464:-33.1682,0,-42.4759	0/0:35:35,0:35:1260:0:0:0,-10.536,-112.452	0/0:28:28,0:28:1008:0:0:0,-8.42884,-88.4247	0/1:290:115,175:115:4105:175:6239:-474.147,0,-277.47	0/1:205:110,95:110:3887:95:3392:-243.084,0,-284.469	0/0:77:77,0:77:2741:0:0:0,-23.1793,-243.928	0/1:135:68,67:68:2428:67:2400:-175.549,0,-175.925	0/1:95:48,47:48:1716:47:1679:-122.777,0,-124.237	0/1:91:54,37:54:1917:37:1323:-91.9776,0,-140.393	0/0:180:180,0:180:6440:0:0:0,-54.1854,-577.294	0/0:343:343,0:343:12253:0:0:0,-103.253,-1090.25	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.0315	0/1:324:162,162:162:5776:162:5824:-426.624,0,-419.804	0/1:117:34,83:34:1220:83:2984:-233.518,0,-73.0994	0/0:132:129,3:129:4582:3:108:0,-29.6608,-398.534	.:.:.:.:.:.:.:.	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.3716	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.05347	0/1:7:6,1:6:216:1:36:-1.49107,0,-16.544	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.3629	0/1:183:92,91:92:3285:91:3264:-238.839,0,-238.872	0/0:116:116,0:116:4136:0:0:0,-34.9195,-368.246	0/1:34:16,18:16:576:18:633:-47.0602,0,-41.3649	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.5854	0/0:149:149,0:149:5319:0:0:0,-44.8535,-472.407	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.235	0/1:197:87,110:87:3100:110:3952:-296.514,0,-214.24	0/1:62:32,30:32:1148:30:1061:-77.0509,0,-84.1895	0/1:64:27,37:27:968:37:1329:-100.548,0,-67.5854	0/0:132:132,0:132:4701:0:0:0,-39.736,-419.591	0/1:181:76,105:76:2687:105:3760:-283.871,0,-184.42	0/0:197:197,0:197:7040:0:0:0,-59.3029,-626.693	0/0:75:75,0:75:2676:0:0:0,-22.5772,-238.354	0/1:116:58,58:58:2080:58:2068:-151.372,0,-151.54	0/0:181:181,0:181:6444:0:0:0,-54.4864,-577.283	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29009	0/0:186:186,0:186:6656:0:0:0,-55.9916,-589.393	0/1:62:32,30:32:1140:30:1080:-78.5791,0,-83.993	1/1:12:1,11:1:36:11:396:-32.4241,-0.0537428,0	0/1:227:146,81:146:5240:81:2893:-191.653,0,-398.185	0/0:49:49,0:49:1744:0:0:0,-14.7505,-155.974	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5048	0/1:81:38,43:38:1333:43:1533:-113.865,0,-94.8252	0/0:76:76,0:76:2732:0:0:0,-22.8783,-243.924	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:186:186,0:186:6645:0:0:0,-55.9916,-594.006	0/0:151:150,1:150:5341:1:36:0,-41.8573,-472.961	0/1:67:30,37:30:1072:37:1323:-99.1903,0,-74.4894	0/0:157:157,0:157:5601:0:0:0,-47.2617,-500.528	0/0:260:260,0:260:9266:0:0:0,-78.2678,-824.888	0/0:230:228,2:228:8083:2:68:0,-62.8918,-715.384	0/0:43:43,0:43:1548:0:0:0,-12.9443,-137.065	0/0:53:53,0:53:1885:0:0:0,-15.9546,-167.219	0/0:59:59,0:59:2120:0:0:0,-17.7608,-190.032	0/1:32:14,18:14:500:18:644:-48.6379,0,-35.0007	0/1:145:60,85:60:2125:85:3039:-230.049,0,-145.351	0/1:72:42,30:42:1485:30:1048:-72.9532,0,-109.014	0/1:231:148,83:148:5300:83:2976:-198.524,0,-399.358	0/0:186:185,1:185:6608:1:36:0,-52.3933,-585.975	0/0:120:120,0:120:4270:0:0:0,-36.1236,-375.21	0/0:121:119,2:119:4244:2:72:0,-29.5879,-369.402	0/1:7:2,5:2:68:5:168:-13.342,0,-4.29738	0/0:143:143,0:143:5101:0:0:0,-43.0473,-452.294	0/0:149:149,0:149:5340:0:0:0,-44.8535,-472.593	0/0:213:213,0:213:7537:0:0:0,-64.1194,-672.584	0/1:70:23,47:23:816:47:1662:-128.736,0,-51.4386	0/0:66:66,0:66:2356:0:0:0,-19.868,-210.713	0/1:52:30,22:30:1076:22:792:-55.9517,0,-80.8809	0/1:138:55,83:55:1976:83:2946:-223.793,0,-135.18	0/1:27:12,15:12:432:15:540:-40.7972,0,-29.5072	0/0:65:65,0:65:2336:0:0:0,-19.5669,-206.455	0/0:64:64,0:64:2285:0:0:0,-19.2659,-201.827	0/1:27:16,11:16:576:11:396:-27.8549,0,-43.1803	0/1:59:27,32:27:964:32:1152:-86.2081,0,-67.0838	0/1:74:20,54:20:701:54:1928:-151.463,0,-40.5684	0/0:205:205,0:205:7310:0:0:0,-61.7111,-650.406	0/0:124:124,0:124:4433:0:0:0,-37.3277,-393.625
chr06	6513228	.	C	T	156244	PASS	AB=0.487347;ABP=9.3845;AC=135;AF=0.725806;AN=186;AO=7479;CIGAR=1X;DP=9887;DPB=9887;DPRA=21.7077;EPP=16217.4;EPPR=5071.46;GTI=3;LEN=1;MEANALT=1.28571;MQM=48.1157;MQMR=59.3817;NS=93;NUMALT=1;ODDS=0.164867;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268083;QR=84244;RO=2366;RPL=7476;RPP=16217.4;RPPR=5071.46;RPR=3;RUN=1;SAF=0;SAP=16243.5;SAR=7479;SRF=0;SRP=5140.71;SRR=2366;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:19,27:19:671:27:968:-72.3408,0,-46.8684	0/1:96:64,32:64:2292:32:1152:-72.7689,0,-177.634	0/1:187:73,114:73:2612:114:4096:-305.702,0,-179.019	1/1:276:0,271:0:0:271:9728:-861.419,-81.5791,0	1/1:89:0,89:0:0:89:3200:-285.69,-26.7917,0	1/1:36:0,36:0:0:36:1296:-114.849,-10.8371,0	1/1:93:1,90:1:36:90:3220:-283.001,-24.1548,0	0/1:303:149,153:149:5311:153:5472:-392.028,0,-386.683	0/1:125:55,70:55:1956:70:2512:-184.13,0,-137.214	0/1:108:55,53:55:1963:53:1908:-137.154,0,-144.394	0/1:50:26,24:26:932:24:856:-61.9957,0,-69.1336	1/1:99:0,97:0:0:97:3488:-307.396,-29.1999,0	0/1:65:34,31:34:1203:31:1116:-79.5405,0,-88.9999	0/1:39:22,16:22:784:16:576:-39.0159,0,-59.0861	1/1:84:0,84:0:0:84:3005:-269.125,-25.2865,0	0/1:65:26,39:26:924:39:1392:-103.623,0,-63.7716	0/1:28:12,16:12:428:16:576:-42.7769,0,-30.4217	1/1:35:0,35:0:0:35:1252:-111.774,-10.5361,0	1/1:28:0,28:0:0:28:1000:-87.746,-8.42884,0	0/1:292:180,112:180:6435:112:4016:-269.909,0,-491.163	0/1:205:96,109:96:3395:109:3916:-287.024,0,-243.027	1/1:76:0,76:0:0:76:2736:-243.45,-22.8783,0	0/1:131:67,63:67:2396:63:2245:-160.686,0,-176.35	0/1:97:49,48:49:1755:48:1728:-124.674,0,-129.021	0/1:91:38,53:38:1352:53:1885:-137.76,0,-94.576	1/1:181:0,178:0:0:178:6396:-573.216,-53.5833,0	1/1:338:0,338:0:0:338:12106:-1077.08,-101.748,0	1/1:23:0,22:0:0:22:792:-70.458,-6.62266,0	0/1:324:162,162:162:5747:162:5820:-423.745,0,-419.696	0/1:118:83,35:83:2972:35:1245:-75.0296,0,-232.144	1/1:134:3,130:3:104:130:4645:-404.782,-30.6895,0	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:396:-35.7209,-3.31133,0	0/1:5:4,1:4:144:1:36:-2.05347,0,-11.8085	0/1:6:1,5:1:36:5:180:-13.7631,0,-1.79209	1/1:11:0,11:0:0:11:392:-34.8406,-3.31133,0	0/1:179:89,89:89:3171:89:3196:-232.128,0,-231.622	1/1:112:0,112:0:0:112:4028:-359.011,-33.7154,0	0/1:35:19,15:19:675:15:540:-37.8063,0,-50.4851	0/1:4:2,2:2:72:2:72:-5.5854,0,-5.6326	1/1:146:0,146:0:0:146:5239:-465.605,-43.9504,0	1/1:38:0,38:0:0:38:1364:-122.221,-11.4391,0	0/1:198:111,87:111:3946:87:3114:-214.569,0,-295.569	0/1:61:29,32:29:1028:32:1152:-84.8426,0,-74.3481	0/1:65:38,26:38:1351:26:936:-64.3547,0,-102.115	1/1:131:0,131:0:0:131:4680:-417.326,-39.4349,0	0/1:176:99,74:99:3548:74:2652:-182.749,0,-267.053	1/1:190:0,189:0:0:189:6753:-601.782,-56.8947,0	1/1:74:0,74:0:0:74:2626:-233.875,-22.2762,0	0/1:117:59,57:59:2091:57:2037:-147.322,0,-153.088	1/1:181:0,181:0:0:181:6477:-580.177,-54.4864,0	0/1:3:2,1:2:72:1:36:-2.67996,0,-5.93363	1/1:186:0,186:0:0:186:6661:-589.778,-55.9916,0	0/1:62:30,32:30:1064:32:1152:-85.0593,0,-77.277	0/0:12:11,1:11:388:1:36:0,-0.0537426,-31.6987	0/1:223:78,145:78:2775:145:5204:-396.41,0,-181.795	1/1:48:0,48:0:0:48:1728:-154.508,-14.4494,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:5:0,5:0:0:5:180:-16.5048,-1.50515,0	0/1:79:41,38:41:1468:38:1364:-98.1452,0,-108.613	1/1:75:0,75:0:0:75:2700:-241.054,-22.5773,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:186:0,186:0:0:186:6635:-592.916,-55.9916,0	1/1:152:1,150:1:36:150:5380:-476.517,-42.2163,0	0/1:67:38,29:38:1338:29:1029:-70.6578,0,-100.535	1/1:157:0,157:0:0:157:5617:-501.707,-47.2617,0	1/1:260:0,257:0:0:257:9216:-819.684,-77.3647,0	1/1:227:1,225:1:36:225:8080:-717.506,-64.7936,0	1/1:43:0,43:0:0:43:1544:-137.038,-12.9443,0	1/1:54:0,54:0:0:54:1932:-171.407,-16.2556,0	1/1:58:0,58:0:0:58:2069:-185.599,-17.4597,0	0/1:32:18,14:18:648:14:504:-35.3544,0,-48.9909	0/1:139:83,56:83:2954:56:2004:-136.379,0,-224.208	0/1:77:35,42:35:1243:42:1508:-109.523,0,-88.6059	0/1:233:82,151:82:2918:151:5408:-408.318,0,-192.704	1/1:185:1,183:1:36:183:6576:-583.038,-52.1503,0	1/1:118:0,118:0:0:118:4240:-372.797,-35.5215,0	1/1:122:2,120:2:72:120:4308:-374.513,-29.8889,0	0/1:8:6,2:6:216:2:72:-4.35313,0,-17.3776	1/1:142:0,142:0:0:142:5060:-449.029,-42.7463,0	1/1:143:0,143:0:0:143:5124:-453.583,-43.0473,0	1/1:215:0,212:0:0:212:7576:-676.262,-63.8184,0	0/1:70:47,22:47:1659:22:792:-49.0966,0,-128.415	1/1:66:0,65:0:0:65:2332:-208.517,-19.567,0	0/1:51:22,27:22:780:27:968:-71.7514,0,-55.4142	0/1:137:81,56:81:2864:56:2016:-139.06,0,-216.706	0/1:27:15,11:15:536:11:387:-25.8935,0,-40.4295	1/1:64:0,63:0:0:63:2260:-199.425,-18.9649,0	1/1:62:0,62:0:0:62:2228:-196.83,-18.6639,0	0/1:28:12,16:12:419:16:576:-42.8792,0,-29.6138	0/1:59:32,27:32:1140:27:972:-67.7782,0,-85.1271	0/1:73:53,20:53:1892:20:720:-42.4523,0,-148.525	1/1:204:0,204:0:0:204:7324:-652.604,-61.4101,0	1/1:123:0,121:0:0:121:4352:-386.188,-36.4246,0
chr06	6570709	.	T	C	260776	PASS	AB=0.536876;ABP=76.3592;AC=137;AF=0.728723;AN=188;AO=9887;CIGAR=1X;DP=12785;DPB=12785;DPRA=69.462;EPP=21455;EPPR=6276.39;GTI=3;LEN=1;MEANALT=1.09783;MQM=59.8779;MQMR=59.9813;NS=94;NUMALT=1;ODDS=1.52569;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=346351;QR=101195;RO=2889;RPL=4062;RPP=685.655;RPPR=1228.72;RPR=5825;RUN=1;SAF=4060;SAP=688.756;SAR=5827;SRF=806;SRP=1228.72;SRR=2083;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:36,27:36:1279:27:928:-64.8643,0,-96.4476	0/1:240:94,146:94:3236:146:5062:-383.418,0,-219.217	0/1:252:130,122:130:4541:122:4276:-309.165,0,-333.002	1/1:248:0,247:0:0:247:8690:-781.885,-74.3544,0	1/1:66:0,66:0:0:66:2300:-207.261,-19.868,0	1/1:59:0,59:0:0:59:2020:-182.039,-17.7608,0	1/1:279:0,279:0:0:279:9847:-886.148,-83.9874,0	0/1:238:101,137:101:3502:137:4814:-361.75,0,-242.389	0/1:155:67,88:67:2370:88:3064:-229.331,0,-166.898	0/1:105:58,46:58:2030:46:1609:-113.459,0,-151.332	0/1:111:49,62:49:1714:62:2148:-160.172,0,-121.129	1/1:128:1,127:1:27:127:4405:-393.928,-35.8321,0	0/1:116:41,74:41:1463:74:2622:-201.249,0,-96.9871	0/1:168:68,100:68:2402:100:3543:-268.508,0,-165.864	1/1:102:1,101:1:27:101:3466:-309.453,-28.0053,0	0/1:93:27,66:27:955:66:2307:-179.897,0,-58.2691	0/1:171:69,102:69:2412:102:3538:-267.126,0,-165.857	1/1:121:0,121:0:0:121:4254:-383.044,-36.4246,0	1/1:77:0,77:0:0:77:2679:-241.355,-23.1793,0	0/1:235:113,122:113:4002:122:4276:-314.281,0,-289.63	0/1:162:72,90:72:2512:90:3172:-236.939,0,-177.569	1/1:161:0,160:0:0:160:5524:-496.394,-48.1648,0	0/1:61:27,34:27:946:34:1196:-89.5825,0,-67.09	0/1:239:118,121:118:4187:121:4259:-311.505,0,-305.069	0/1:139:83,56:83:2917:56:1994:-137.889,0,-220.924	1/1:239:0,239:0:0:239:8407:-756.249,-71.9462,0	1/1:217:1,216:1:36:216:7677:-687.198,-61.7252,0	1/1:53:0,53:0:0:53:1868:-168.399,-15.9546,0	0/1:234:111,123:111:3855:123:4319:-318.384,0,-276.71	0/1:203:76,126:76:2672:126:4464:-340.765,0,-179.561	1/1:118:1,117:1:36:117:4090:-364.604,-31.9233,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:28:0,28:0:0:28:984:-88.8728,-8.42884,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:5:1,4:1:32:4:136:-11.07,0,-1.69416	1/1:9:0,9:0:0:9:312:-28.4154,-2.70927,0	0/1:245:135,110:135:4774:110:3745:-263.365,0,-356.067	1/1:211:0,211:0:0:211:7471:-672.423,-63.5173,0	0/1:145:63,82:63:2172:82:2825:-210.809,0,-152.094	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:245:0,245:0:0:245:8648:-777.966,-73.7524,0	1/1:104:0,104:0:0:104:3671:-330.598,-31.3071,0	0/1:90:41,49:41:1428:49:1727:-128.064,0,-101.723	0/1:118:59,59:59:2032:59:2056:-149.784,0,-147.627	0/1:63:35,28:35:1248:28:952:-67.0216,0,-93.66	1/1:134:0,134:0:0:134:4684:-421.726,-40.338,0	0/1:161:64,97:64:2200:97:3381:-256.041,0,-149.797	1/1:194:1,192:1:36:192:6780:-606.57,-54.8404,0	1/1:124:0,124:0:0:124:4363:-392.848,-37.3277,0	0/1:159:92,67:92:3226:67:2388:-167.314,0,-242.702	0/1:252:115,137:115:4057:137:4743:-351.115,0,-289.462	0/1:9:3,6:3:100:6:208:-16.3498,0,-6.62117	1/1:232:0,232:0:0:232:8151:-733.361,-69.839,0	0/1:108:51,57:51:1790:57:2015:-149.112,0,-128.87	0/1:24:11,13:11:379:13:464:-34.8728,0,-27.2158	0/1:150:61,89:61:2133:89:3184:-241.63,0,-147.038	1/1:50:1,48:1:36:48:1703:-149.957,-11.512,0	0/1:7:4,3:4:140:3:97:-6.94278,0,-10.8374	1/1:18:0,18:0:0:18:627:-56.7544,-5.41854,0	0/1:132:83,49:83:2931:49:1733:-116.516,0,-224.291	1/1:207:0,207:0:0:207:7216:-649.508,-62.3132,0	0/1:6:3,3:3:104:3:104:-7.88926,0,-7.89663	1/1:174:0,174:0:0:174:6090:-546.817,-52.3792,0	1/1:217:1,216:1:36:216:7606:-680.987,-61.7252,0	0/1:134:49,85:49:1728:85:2996:-229.535,0,-115.467	1/1:99:0,99:0:0:99:3459:-311.526,-29.802,0	1/1:231:1,230:1:36:230:8090:-724.535,-65.9397,0	1/1:275:0,275:0:0:275:9684:-871.28,-82.7833,0	1/1:108:1,107:1:36:107:3765:-335.455,-28.913,0	1/1:157:0,157:0:0:157:5413:-487.308,-47.2617,0	1/1:130:0,129:0:0:129:4480:-402.239,-38.8329,0	0/1:24:6,18:6:216:18:639:-50.6135,0,-12.5658	0/1:162:80,81:80:2747:81:2843:-207.282,0,-198.648	0/1:141:74,67:74:2615:67:2356:-169.851,0,-193.154	0/1:162:82,80:82:2919:80:2769:-200.682,0,-214.179	1/1:213:0,213:0:0:213:7519:-676.137,-64.1194,0	1/1:215:0,215:0:0:215:7557:-680.182,-64.7215,0	1/1:154:1,153:1:27:153:5388:-482.287,-43.6588,0	1/1:11:1,10:1:27:10:356:-29.6815,-0.611547,0	1/1:153:0,153:0:0:153:5370:-483.441,-46.0576,0	1/1:144:0,144:0:0:144:5059:-455.452,-43.3483,0	1/1:227:1,226:1:32:226:7887:-706.658,-65.1345,0	0/1:180:67,113:67:2330:113:3900:-296.846,0,-155.773	1/1:133:0,133:0:0:133:4657:-419.299,-40.037,0	0/1:98:47,51:47:1612:51:1724:-125.938,0,-115.862	0/1:147:74,73:74:2596:73:2533:-183.97,0,-189.637	0/1:64:33,31:33:1145:31:1087:-78.8721,0,-84.0875	1/1:127:0,127:0:0:127:4388:-394.774,-38.2308,0	1/1:145:0,145:0:0:145:5003:-450.428,-43.6494,0	0/1:125:48,77:48:1716:77:2687:-204.357,0,-117.097	0/1:235:103,132:103:3631:132:4605:-343.847,0,-256.258	0/1:75:46,29:46:1559:29:990:-66.8181,0,-118.016	1/1:69:0,69:0:0:69:2416:-217.691,-20.7711,0	1/1:165:1,164:1:36:164:5777:-516.448,-46.0717,0
chr06	6823393	.	T	C	123088	PASS	AB=0.53986;ABP=46.2874;AC=142;AF=0.755319;AN=188;AO=5958;CIGAR=1X;DP=7411;DPB=7411;DPRA=0;EPP=12888.6;EPPR=3140.79;GTI=4;LEN=1;MEANALT=1.03191;MQM=59.9935;MQMR=60;NS=94;NUMALT=1;ODDS=0.565784;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207521;QR=48004;RO=1449;RPL=5952;RPP=12888.6;RPPR=3140.79;RPR=6;RUN=1;SAF=5958;SAP=12940.6;SAR=0;SRF=1449;SRP=3149.47;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:15,29:15:499:29:1003:-77.3342,0,-31.9828	0/1:28:10,18:10:335:18:622:-47.8732,0,-22.0456	0/1:143:57,86:57:1868:86:3022:-229.166,0,-125.343	1/1:216:0,216:0:0:216:7551:-679.648,-65.0225,0	1/1:66:2,64:2:72:64:2211:-192.417,-13.0313,0	1/1:37:0,37:0:0:37:1296:-116.941,-11.1381,0	1/1:73:0,73:0:0:73:2527:-227.683,-21.9752,0	0/1:84:58,26:58:1942:26:911:-57.0184,0,-149.768	0/1:79:34,44:34:1093:44:1547:-115.681,0,-74.8222	0/1:37:10,27:10:338:27:948:-74.4965,0,-19.6079	0/1:52:26,26:26:855:26:906:-66.1999,0,-61.6	1/1:120:0,120:0:0:120:4110:-370.101,-36.1236,0	0/1:108:58,50:58:1935:50:1738:-124.192,0,-141.911	0/1:66:22,44:22:701:44:1530:-118.122,0,-43.5224	1/1:62:0,62:0:0:62:2103:-189.536,-18.6639,0	0/1:53:25,28:25:833:28:970:-71.6556,0,-59.3206	0/1:40:15,25:15:528:25:884:-67.8372,0,-35.8102	1/1:31:0,31:0:0:31:1091:-98.4987,-9.33193,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:87:33,54:33:1122:54:1909:-145.896,0,-75.093	0/1:134:73,61:73:2389:61:2092:-148.209,0,-174.928	1/1:171:0,171:0:0:171:5958:-536.342,-51.4761,0	0/1:104:53,51:53:1800:51:1819:-132.683,0,-130.972	0/1:47:32,15:32:1030:15:536:-34.4264,0,-78.8452	0/1:67:22,45:22:730:45:1579:-122.231,0,-45.8415	1/1:205:0,205:0:0:205:7106:-639.617,-61.7112,0	1/1:232:0,232:0:0:232:8005:-720.5,-69.839,0	1/1:26:0,26:0:0:26:913:-82.484,-7.82678,0	0/1:221:85,136:85:2787:136:4654:-352.507,0,-184.549	0/1:99:36,63:36:1218:63:2211:-169.454,0,-80.1171	1/1:63:0,63:0:0:63:2203:-198.533,-18.9649,0	0/1:18:5,13:5:172:13:463:-36.5883,0,-10.3994	1/1:24:0,24:0:0:24:826:-74.6542,-7.22472,0	0/1:4:2,2:2:68:2:68:-5.25359,0,-5.25359	0/1:13:3,10:3:108:10:336:-26.6526,0,-6.16178	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	0/1:188:116,72:116:3813:72:2495:-168.21,0,-286.785	1/1:152:0,152:0:0:152:5295:-476.7,-45.7566,0	0/1:51:24,27:24:828:27:950:-70.4609,0,-59.4835	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:98:0,98:0:0:98:3433:-309.188,-29.5009,0	1/1:38:0,38:0:0:38:1304:-117.656,-11.4391,0	0/1:132:61,71:61:1986:71:2463:-182.189,0,-139.273	0/1:42:21,21:21:715:21:733:-53.6464,0,-52.0233	0/1:45:28,17:28:936:17:576:-38.6116,0,-70.9984	1/1:104:0,104:0:0:104:3645:-328.26,-31.3071,0	0/1:93:44,49:44:1492:49:1712:-126.367,0,-106.574	1/1:141:1,140:1:36:140:4953:-442.326,-38.847,0	1/1:65:0,65:0:0:65:2269:-204.472,-19.567,0	0/1:83:43,40:43:1453:40:1383:-99.7773,0,-106.075	0/1:106:39,67:39:1268:67:2272:-172.83,0,-82.5013	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:97:0,97:0:0:97:3357:-302.352,-29.1999,0	0/1:30:9,21:9:311:21:716:-55.7248,0,-19.2928	0/1:8:3,5:3:96:5:176:-13.7768,0,-6.54984	0/1:89:27,62:27:888:62:2138:-165.894,0,-53.4318	1/1:61:0,61:0:0:61:2156:-194.308,-18.3628,0	0/1:7:3,4:3:90:4:144:-11.2064,0,-6.29077	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	0/1:59:35,24:35:1137:24:825:-56.8021,0,-84.8632	1/1:95:1,94:1:32:94:3301:-294.111,-25.3985,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:164:2,162:2:68:162:5697:-506.34,-42.9112,0	1/1:128:1,127:1:32:127:4452:-397.658,-35.3325,0	0/1:48:13,35:13:421:35:1206:-94.3918,0,-23.7529	1/1:131:0,131:0:0:131:4549:-409.588,-39.4349,0	1/1:95:0,95:0:0:95:3336:-300.46,-28.5979,0	1/1:101:0,101:0:0:101:3491:-314.404,-30.404,0	1/1:44:0,44:0:0:44:1551:-139.881,-13.2453,0	1/1:48:0,48:0:0:48:1659:-149.596,-14.4494,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:15:1,14:1:36:14:495:-41.2848,-0.917175,0	0/1:119:60,59:60:1971:59:2026:-146.79,0,-141.837	0/1:64:25,39:25:817:39:1347:-102.259,0,-54.5661	0/1:71:33,38:33:1047:38:1318:-97.5448,0,-73.1465	1/1:172:0,170:0:0:170:5904:-531.126,-51.1751,0	1/1:110:0,110:0:0:110:3895:-350.748,-33.1133,0	1/1:86:0,86:0:0:86:3004:-270.594,-25.8886,0	0/1:15:10,5:10:344:5:180:-12.0366,0,-26.7766	1/1:123:0,123:0:0:123:4303:-387.454,-37.0267,0	1/1:122:0,122:0:0:122:4305:-387.631,-36.7257,0	1/1:127:0,127:0:0:127:4387:-395.016,-38.2308,0	0/1:47:24,23:24:798:23:819:-59.8832,0,-57.9806	1/1:50:0,50:0:0:50:1747:-157.513,-15.0515,0	0/1:54:18,36:18:591:36:1226:-94.381,0,-37.2445	1/1:131:0,131:0:0:131:4597:-413.899,-39.4349,0	0/1:14:9,5:9:299:5:176:-11.9706,0,-23.0188	1/1:52:0,52:0:0:52:1820:-164.079,-15.6536,0	1/1:76:0,76:0:0:76:2627:-236.679,-22.8783,0	0/1:49:20,29:20:625:29:1029:-78.1729,0,-41.7953	0/1:103:36,66:36:1170:66:2289:-175.208,0,-74.5275	0/1:87:63,24:63:2177:24:832:-49.0044,0,-170.007	1/1:93:0,93:0:0:93:3229:-290.835,-27.9958,0	1/1:122:0,122:0:0:122:4213:-379.357,-36.7257,0
chr06	6823422	.	A	T	29514.4	PASS	AB=0.497316;ABP=3.2318;AC=48;AF=0.258065;AN=186;AO=1777;CIGAR=1X;DP=7465;DPB=7465;DPRA=1.02659;EPP=3861.72;EPPR=12345.7;GTI=1;LEN=1;MEANALT=1.07273;MQM=59.9831;MQMR=59.8871;NS=93;NUMALT=1;ODDS=3.77372;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63471;QR=202751;RO=5684;RPL=1;RPP=3853.04;RPPR=12293.6;RPR=1776;RUN=1;SAF=1;SAP=3853.04;SAR=1776;SRF=6;SRP=12293.6;SRR=5678;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:149:70,79:70:2516:79:2840:-210.984,0,-181.835	0/1:72:31,41:31:1112:41:1455:-109.571,0,-78.7147	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.165	0/0:41:38,3:38:1351:3:108:0,-2.26706,-111.792	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.269	0/0:109:109,0:109:3876:0:0:0,-32.8123,-349.032	0/1:124:73,51:73:2596:51:1823:-127.023,0,-196.527	0/1:33:22,11:22:792:11:396:-26.0488,0,-61.6717	0/1:113:62,51:62:2214:51:1820:-130.059,0,-165.482	0/1:62:29,33:29:1044:33:1176:-87.4839,0,-75.6109	0/0:49:49,0:49:1729:0:0:0,-14.7505,-155.892	0/1:76:35,40:35:1248:40:1436:-106.601,0,-89.6879	0/1:85:42,43:42:1508:43:1548:-114.026,0,-110.387	0/0:47:47,0:47:1663:0:0:0,-14.1484,-149.957	0/1:48:19,29:19:671:29:1032:-78.744,0,-46.2648	0/1:82:46,36:46:1627:36:1288:-91.5391,0,-121.975	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.377	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.961	0/1:123:64,59:64:2296:59:2101:-152.331,0,-169.873	0/1:163:70,92:70:2499:92:3308:-248.811,0,-176.034	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.354	0/1:28:11,17:11:396:17:604:-46.2612,0,-27.3624	0/1:73:40,33:40:1432:33:1188:-85.2534,0,-107.2	0/1:39:20,19:20:716:19:684:-50.1502,0,-53.0275	0/0:299:298,1:298:10627:1:36:0,-86.4097,-952.724	0/0:152:152,0:152:5431:0:0:0,-45.7566,-488.92	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:181:93,88:93:3327:88:3148:-229.058,0,-245.152	0/1:155:88,67:88:3129:67:2400:-169.58,0,-235.176	0/0:86:85,1:85:3044:1:36:0,-22.2903,-270.591	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:10:5,5:5:165:5:180:-13.5418,0,-12.1633	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:208:100,108:100:3555:108:3857:-284.71,0,-257.543	0/0:195:195,0:195:6921:0:0:0,-58.7008,-622.897	0/1:84:42,42:42:1512:42:1508:-110.728,0,-111.086	.:.:.:.:.:.:.:.	0/0:90:90,0:90:3197:0:0:0,-27.0927,-287.953	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:99:55,44:55:1948:44:1568:-111.61,0,-145.791	0/1:92:40,52:40:1428:52:1821:-136.472,0,-101.123	0/1:57:30,27:30:1055:27:968:-70.2787,0,-78.1013	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.57	0/1:81:45,36:45:1595:36:1292:-92.2003,0,-119.453	0/0:112:109,3:109:3884:3:108:0,-23.6402,-339.675	0/0:83:83,0:83:2975:0:0:0,-24.9855,-267.982	0/1:144:71,73:71:2529:73:2611:-191.889,0,-184.512	0/1:89:43,46:43:1539:46:1652:-122.177,0,-112.003	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:98:98,0:98:3478:0:0:0,-29.5009,-313.223	0/1:27:10,17:10:360:17:612:-47.2856,0,-24.6165	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	0/1:82:43,39:43:1544:39:1400:-101.615,0,-114.569	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5511	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:46:32,14:32:1152:14:500:-31.4888,0,-90.1428	0/0:126:124,2:124:4416:2:72:0,-31.0931,-390.775	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:167:167,0:167:5940:0:0:0,-50.272,-534.466	0/0:192:192,0:192:6821:0:0:0,-57.7978,-613.959	0/1:76:44,32:44:1580:32:1144:-80.3912,0,-119.611	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:156:152,4:152:5414:4:140:0,-34.0161,-473.237	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.248	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/0:68:68,0:68:2410:0:0:0,-20.47,-217.155	0/0:90:90,0:90:3203:0:0:0,-27.0927,-288.494	0/1:14:6,8:6:216:8:273:-20.6858,0,-15.5761	0/1:56:29,27:29:1031:27:968:-70.5797,0,-76.1141	0/1:66:42,24:42:1508:24:860:-57.8539,0,-116.147	0/1:89:42,47:42:1508:47:1673:-124.064,0,-109.223	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.691	0/0:105:105,0:105:3740:0:0:0,-31.6081,-336.757	0/0:103:100,3:100:3571:3:93:0,-22.3294,-312.915	0/1:47:31,16:31:1096:16:572:-37.665,0,-84.8015	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.772	0/0:80:80,0:80:2844:0:0:0,-24.0824,-256.195	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:117:61,56:61:2163:56:1978:-143.07,0,-159.609	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:96:45,50:45:1616:50:1766:-130.252,0,-116.772	0/0:167:167,0:167:5962:0:0:0,-50.272,-536.685	0/1:43:17,26:17:608:26:932:-71.2546,0,-42.1068	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.545	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.873	0/1:56:28,27:28:991:27:964:-70.1604,0,-72.5873	0/1:106:45,61:45:1599:61:2183:-164.826,0,-112.29	0/1:83:25,58:25:885:58:2061:-160.774,0,-54.981	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.059	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.957
chr06	6823429	.	G	A	119019	PASS	AB=0.497177;ABP=3.25553;AC=136;AF=0.73913;AN=184;AO=5679;CIGAR=1X;DP=7479;DPB=7479;DPRA=0;EPP=12334.8;EPPR=3905.15;GTI=1;LEN=1;MEANALT=1.03261;MQM=59.8834;MQMR=59.9894;NS=92;NUMALT=1;ODDS=4.65061;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201863;QR=63847;RO=1797;RPL=4;RPP=12300.1;RPPR=3896.47;RPR=5675;RUN=1;SAF=4;SAP=12300.1;SAR=5675;SRF=1;SRP=3896.47;SRR=1796;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:147:76,71:76:2715:71:2529:-183.606,0,-200.342	0/1:71:40,31:40:1440:31:1093:-77.3036,0,-108.525	1/1:103:0,103:0:0:103:3669:-330.399,-31.0061,0	1/1:41:3,38:3:108:38:1360:-112.603,-2.26706,0	1/1:30:0,30:0:0:30:1053:-95.0777,-9.0309,0	1/1:107:0,107:0:0:107:3810:-343.097,-32.2102,0	0/1:121:50,71:50:1788:71:2548:-193.109,0,-124.778	0/1:32:11,21:11:388:21:752:-58.3733,0,-25.6244	0/1:111:50,61:50:1783:61:2180:-163.03,0,-127.332	0/1:67:38,29:38:1360:29:1036:-73.3849,0,-102.532	1/1:48:0,48:0:0:48:1675:-151.033,-14.4494,0	0/1:75:41,34:41:1452:34:1220:-87.5296,0,-108.399	0/1:88:42,46:42:1508:46:1631:-120.571,0,-109.524	1/1:48:0,48:0:0:48:1707:-153.915,-14.4494,0	0/1:48:29,19:29:1032:19:680:-47.0782,0,-78.744	0/1:84:37,47:37:1316:47:1663:-124.661,0,-93.4553	1/1:90:0,90:0:0:90:3210:-289.115,-27.0927,0	1/1:68:0,68:0:0:68:2390:-215.353,-20.47,0	0/1:119:59,60:59:2124:60:2128:-155.965,0,-155.606	0/1:162:93,69:93:3340:69:2445:-171.537,0,-252.05	1/1:82:0,82:0:0:82:2928:-263.747,-24.6845,0	0/1:29:18,11:18:633:11:392:-26.6987,0,-48.5652	0/1:73:33,40:33:1169:40:1432:-107.2,0,-83.5401	0/1:38:19,19:19:654:19:661:-48.3725,0,-47.7384	1/1:299:1,298:1:36:298:10564:-947.08,-86.4097,0	1/1:151:0,151:0:0:151:5360:-482.533,-45.4555,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:182:92,90:92:3240:90:3188:-232.347,0,-237.033	0/1:156:66,90:66:2335:90:3191:-240.45,0,-163.447	1/1:88:1,87:1:36:87:3116:-276.841,-22.8924,0	.:.:.:.:.:.:.:.	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:12:5,7:5:171:7:252:-19.4166,0,-12.1131	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:6:1,5:1:36:5:180:-14.7279,0,-1.79209	0/1:211:112,98:112:3995:98:3508:-252.284,0,-296.164	1/1:195:0,195:0:0:195:6916:-622.474,-58.7009,0	0/1:83:42,41:42:1487:41:1464:-107.069,0,-109.138	.:.:.:.:.:.:.:.	1/1:87:0,87:0:0:87:3089:-278.238,-26.1896,0	1/1:33:0,33:0:0:33:1180:-106.507,-9.93399,0	0/1:98:45,53:45:1579:53:1864:-138.537,0,-112.896	0/1:96:54,42:54:1908:42:1500:-106.396,0,-143.096	0/1:60:30,30:30:1064:30:1063:-77.919,0,-78.0099	1/1:69:0,69:0:0:69:2447:-220.483,-20.7711,0	0/1:82:36,46:36:1281:46:1639:-123.11,0,-90.9068	1/1:113:3,110:3:108:110:3903:-341.387,-23.9412,0	1/1:79:0,79:0:0:79:2796:-251.879,-23.7814,0	0/1:140:72,68:72:2576:68:2448:-178.43,0,-189.945	0/1:87:47,39:47:1684:39:1389:-99.0505,0,-125.599	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:97:0,97:0:0:97:3477:-313.13,-29.1999,0	0/1:26:17,9:17:599:9:320:-21.3156,0,-46.4113	0/1:15:7,8:7:252:8:280:-21.0239,0,-18.5135	0/1:83:40,43:40:1401:43:1548:-114.628,0,-101.399	1/1:5:0,5:0:0:5:176:-16.1846,-1.50515,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:16:0,16:0:0:16:563:-50.9992,-4.81648,0	0/1:46:15,31:15:536:31:1114:-86.7242,0,-34.7274	1/1:129:3,126:3:108:126:4468:-392.214,-28.7577,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:170:0,170:0:0:170:6019:-541.801,-51.1751,0	1/1:189:1,188:1:36:188:6652:-595.158,-53.2964,0	0/1:78:31,46:31:1112:46:1640:-124.348,0,-76.8522	1/1:50:0,50:0:0:50:1775:-160.032,-15.0515,0	1/1:149:5,144:5:180:144:5081:-440.865,-28.3014,0	1/1:74:0,74:0:0:74:2629:-236.855,-22.2762,0	1/1:42:0,42:0:0:42:1475:-133.041,-12.6433,0	1/1:67:0,67:0:0:67:2370:-213.557,-20.169,0	1/1:90:0,90:0:0:90:3169:-285.434,-27.0927,0	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:55:26,29:26:936:29:994:-73.0776,0,-68.0028	0/1:67:24,43:24:845:43:1536:-118.363,0,-56.1981	0/1:89:48,41:48:1679:41:1455:-104.454,0,-124.601	1/1:93:0,93:0:0:93:3340:-300.812,-27.9958,0	1/1:105:0,105:0:0:105:3751:-337.747,-31.6082,0	1/1:103:2,101:2:72:101:3596:-317.003,-24.1694,0	0/1:46:16,30:16:568:30:1049:-80.8724,0,-37.6045	1/1:78:0,78:0:0:78:2774:-249.636,-23.4803,0	1/1:80:0,80:0:0:80:2851:-256.826,-24.0824,0	1/1:69:0,69:0:0:69:2444:-220.214,-20.7711,0	0/1:116:54,62:54:1910:62:2224:-165.277,0,-137.257	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	0/1:98:52,46:52:1856:46:1642:-118.567,0,-137.808	1/1:172:0,172:0:0:172:6143:-552.969,-51.7772,0	0/1:46:29,17:29:1003:17:597:-40.2078,0,-76.7294	1/1:79:0,79:0:0:79:2819:-253.826,-23.7814,0	1/1:76:0,76:0:0:76:2702:-243.423,-22.8783,0	0/1:55:28,27:28:1000:27:963:-70.4289,0,-73.7587	0/1:106:62,44:62:2157:44:1564:-109.142,0,-162.485	0/1:82:56,26:56:1991:26:906:-57.1686,0,-154.779	1/1:55:0,55:0:0:55:1944:-175.156,-16.5567,0	1/1:97:0,97:0:0:97:3476:-313.051,-29.1999,0
chr06	6823461	.	CTCT	TTCA,CTCA	162827	PASS	AB=0.50388,0.492794;ABP=3.48215,4.6377;AC=139,47;AF=0.747312,0.252688;AN=186;AO=5865,1795;CIGAR=1X2M1X,3M1X;DP=7690;DPB=7691;DPRA=0,1.12243;EPP=12695.3,3874.79;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.83871,2.29091;MQM=59.8648,59.985;MQMR=60;NS=93;NUMALT=2;ODDS=5.90277;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=54,0;PQR=0;PRO=0;QA=206206,64186;QR=36;RO=1;RPL=5860,1792;RPP=12695.3,3874.79;RPPR=5.18177;RPR=5,3;RUN=1,1;SAF=0,0;SAP=12738.7,3900.8;SAR=5865,1795;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:8:0,2,5:0:0:2,5:72,176:-20.1979,-14.3214,-13.7193,-5.87483,0,-4.36968	1/2:152:0,72,80:0:0:72,80:2545,2876:-442.262,-234.994,-213.319,-207.625,0,-183.542	1/2:70:0,30,38:0:0:30,38:1047,1359:-196.009,-110.854,-101.823,-85.1901,0,-73.751	1/1:106:0,105,0:0:0:105,0:3703,0:-333.132,-31.6082,0,-333.132,-31.6082,-333.132	1/1:42:0,39,3:0:0:39,3:1370,108:-123.234,-11.7402,0,-114.421,-2.56809,-113.518	1/1:33:0,33,0:0:0:33,0:1178,0:-106.327,-9.93399,0,-106.327,-9.93399,-106.327	1/1:111:0,111,0:0:0:111,0:3893,0:-350.567,-33.4143,0,-350.567,-33.4143,-350.567	1/2:127:0,76,51:0:0:76,51:2691,1836:-369.335,-150.168,-127.29,-219.524,0,-204.171	1/2:34:0,23,11:0:0:23,11:820,392:-99.1512,-32.3087,-25.385,-67.1988,0,-63.8874	1/2:113:0,62,50:0:0:62,50:2180,1768:-321.454,-144.009,-125.345,-177.457,0,-162.406	1/2:68:0,30,38:0:0:30,38:1069,1358:-198.215,-111.081,-102.05,-87.4914,0,-76.0522	1/1:51:0,51,0:0:0:51,0:1787,0:-161.111,-15.3525,0,-161.111,-15.3525,-161.111	1/2:77:0,36,41:0:0:36,41:1269,1452:-221.953,-118.633,-107.795,-103.674,0,-91.3314	1/2:89:0,46,43:0:0:46,43:1608,1535:-256.298,-125.498,-111.651,-131.153,0,-118.209	1/1:50:1,49,0:1:36:49,0:1706,0:-150.224,-11.4532,0,-150.525,-14.7505,-153.463	1/2:47:0,19,28:0:0:19,28:681,1008:-138.147,-82.6075,-76.8879,-55.8985,0,-47.4697	1/2:82:0,47,35:0:0:47,35:1639,1242:-234.839,-101.547,-87.3986,-133.644,0,-123.108	1/1:90:0,90,0:0:0:90,0:3171,0:-285.55,-27.0927,0,-285.55,-27.0927,-285.55	1/1:70:0,70,0:0:0:70,0:2447,0:-220.481,-21.0721,0,-220.481,-21.0721,-220.481	1/2:121:0,63,58:0:0:63,58:2234,2079:-351.923,-169.92,-150.955,-182.359,0,-164.899	1/2:163:0,72,91:0:0:72,91:2532,3263:-472.597,-266.496,-244.822,-206.455,0,-179.062	1/1:81:0,75,0:0:0:75,0:2645,0:-237.939,-22.5773,0,-237.939,-22.5773,-237.939	1/2:29:0,11,18:0:0:11,18:382,632:-82.8411,-51.7882,-48.4769,-31.4014,0,-25.9829	1/2:75:0,41,34:0:0:41,34:1420,1224:-215.628,-100.232,-87.8898,-115.75,0,-105.515	1/2:39:0,21,18:0:0:21,18:744,648:-113.839,-53.2333,-46.9117,-60.9626,0,-55.5441	1/1:311:0,310,1:0:0:310,1:10795,36:-971.057,-93.3193,0,-968.12,-90.0221,-967.819	1/1:153:0,151,0:0:0:151,0:5312,0:-477.947,-45.4555,0,-477.947,-45.4555,-477.947	1/1:42:0,42,0:0:0:42,0:1504,0:-135.655,-12.6433,0,-135.655,-12.6433,-135.655	1/2:191:0,97,92:0:0:97,92:3392,3298:-544.602,-269.043,-239.843,-275.611,0,-247.916	1/2:160:0,92,68:0:0:92,68:3194,2431:-458.214,-198.575,-170.88,-259.992,0,-239.522	1/1:89:0,87,1:0:0:87,1:3056,36:-274.956,-26.1896,0,-272.018,-23.2052,-271.717	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:18:0,18,0:0:0:18,0:626,0:-56.6641,-5.41854,0,-56.6641,-5.41854,-56.6641	1/2:12:0,7,5:0:0:7,5:245,180:-34.9743,-15.0469,-12.9397,-20.283,0,-18.7779	1/2:10:0,5,5:0:0:5,5:175,180:-29.2803,-15.0469,-13.5418,-14.5882,0,-13.083	1/1:6:0,6,0:0:0:6,0:210,0:-19.2371,-1.80618,0,-19.2371,-1.80618,-19.2371	1/2:216:0,103,113:0:0:103,113:3614,4050:-624.772,-330.669,-299.663,-294.457,0,-260.441	1/1:205:0,205,0:0:0:205,0:7112,0:-640.129,-61.7112,0,-640.129,-61.7112,-640.129	1/2:84:0,41,42:0:0:41,42:1442,1488:-238.584,-121.205,-108.863,-117.373,0,-104.729	.:.:.:.:.:.:.:.	1/1:91:0,91,0:0:0:91,0:3197,0:-287.951,-27.3937,0,-287.951,-27.3937,-287.951	1/1:36:0,36,0:0:0:36,0:1268,0:-114.421,-10.8371,0,-114.421,-10.8371,-114.421	1/2:99:0,55,43:0:0:55,43:1910,1517:-278.784,-123.518,-106.961,-155.257,0,-142.312	1/2:97:0,42,55:0:0:42,55:1492,1971:-282.682,-161.108,-148.464,-121.931,0,-105.374	1/2:60:0,31,29:0:0:31,29:1095,1035:-173.906,-84.7332,-75.4013,-89.5277,0,-80.7978	1/1:70:0,69,0:0:0:69,0:2412,0:-217.103,-20.7711,0,-217.103,-20.7711,-217.103	1/2:82:0,46,34:0:0:46,34:1594,1220:-229.056,-99.5121,-85.6647,-129.538,0,-119.303	1/1:120:0,116,3:0:0:116,3:4043,108:-363.697,-34.9195,0,-354.884,-26.1072,-353.981	1/1:86:0,86,0:0:0:86,0:3028,0:-272.752,-25.8886,0,-272.752,-25.8886,-272.752	1/2:142:0,72,70:0:0:72,70:2549,2512:-412.889,-205.26,-183.586,-207.985,0,-186.913	1/2:90:0,43,47:0:0:43,47:1528,1692:-262.922,-138.418,-125.474,-124.861,0,-110.712	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/1:98:0,98,0:0:0:98,0:3479,0:-313.313,-29.5009,0,-313.313,-29.5009,-313.313	1/2:27:0,9,18:0:0:9,18:312,648:-78.5882,-53.2333,-50.5241,-25.7058,0,-20.2872	1/2:15:0,8,7:0:0:8,7:273,252:-43.0642,-20.9217,-18.5135,-22.4935,0,-20.3863	1/2:83:0,42,40:0:0:42,40:1493,1426:-237.841,-116.178,-103.534,-121.602,0,-109.561	1/1:5:0,5,0:0:0:5,0:178,0:-16.368,-1.50515,0,-16.368,-1.50515,-16.368	1/2:8:0,2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chr06	6860724	.	A	T	140613	PASS	AB=0.508475;ABP=5.4394;AC=139;AF=0.739362;AN=188;AO=6585;CIGAR=1X;DP=8518;DPB=8518;DPRA=18.3075;EPP=14276.1;EPPR=4161.45;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9415;MQMR=59.9912;NS=94;NUMALT=1;ODDS=0.0585553;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236148;QR=69039;RO=1931;RPL=6584;RPP=14293.5;RPPR=4161.45;RPR=1;RUN=1;SAF=2;SAP=14284.8;SAR=6583;SRF=0;SRP=4196.12;SRR=1931;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/1:90:38,52:38:1356:52:1868:-141.307,0,-95.2478	0/1:59:30,29:30:1076:29:1040:-76.1536,0,-79.3921	1/1:136:0,136:0:0:136:4869:-438.361,-40.9401,0	1/1:31:0,31:0:0:31:1112:-100.381,-9.33193,0	1/1:43:0,43:0:0:43:1540:-138.823,-12.9443,0	1/1:78:0,78:0:0:78:2804:-252.597,-23.4803,0	0/1:114:52,62:52:1855:62:2224:-166.099,0,-132.912	0/1:67:34,33:34:1212:33:1169:-85.3463,0,-89.2173	0/1:110:62,48:62:2215:48:1724:-122.332,0,-166.501	0/1:105:61,44:61:2180:44:1576:-110.523,0,-164.858	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	0/1:123:67,56:67:2387:56:2003:-143.516,0,-178.06	0/1:104:58,46:58:2084:46:1656:-118.021,0,-156.523	1/1:89:0,89:0:0:89:3189:-287.233,-26.7917,0	0/1:89:42,47:42:1495:47:1684:-125.055,0,-108.052	0/1:105:60,45:60:2143:45:1610:-113.57,0,-161.529	1/1:100:1,99:1:36:99:3552:-316.289,-26.5047,0	1/1:68:0,68:0:0:68:2444:-220.206,-20.47,0	0/1:96:42,54:42:1495:54:1944:-146.337,0,-105.945	0/1:110:34,76:34:1190:76:2707:-210.696,0,-74.2877	1/1:70:0,70:0:0:70:2502:-225.432,-21.0721,0	0/1:39:23,16:23:820:16:576:-40.4348,0,-62.3805	0/1:103:46,57:46:1644:57:2040:-152.86,0,-117.243	0/1:54:23,31:23:820:31:1114:-83.6873,0,-57.8669	1/1:246:1,245:1:36:245:8772:-785.87,-70.4551,0	1/1:179:0,179:0:0:179:6425:-578.33,-53.8844,0	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0	0/1:172:67,105:67:2404:105:3768:-287.541,0,-164.839	0/1:111:60,51:60:2152:51:1828:-131.387,0,-160.533	1/1:85:1,84:1:36:84:3016:-268.072,-21.9893,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5517	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:7:4,3:4:140:3:108:-7.87876,0,-10.8374	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:266:134,132:134:4791:132:4740:-346.683,0,-351.272	1/1:179:1,178:1:36:178:6377:-570.229,-50.2861,0	0/1:120:62,58:62:2199:58:2088:-152.066,0,-162.052	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:255:0,255:0:0:255:9148:-823.29,-76.7627,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	0/1:117:59,58:59:2116:58:2080:-152.25,0,-155.488	0/1:81:33,48:33:1188:48:1719:-130.611,0,-82.8452	0/1:92:47,45:47:1675:45:1616:-118.035,0,-123.342	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	0/1:85:33,52:33:1176:52:1872:-143.171,0,-80.5602	1/1:118:0,118:0:0:118:4233:-381.148,-35.5215,0	1/1:126:1,125:1:36:125:4488:-400.489,-34.3315,0	0/1:81:43,38:43:1540:38:1368:-99.0374,0,-114.51	0/1:82:29,53:29:1040:53:1896:-146.234,0,-69.2299	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:264:0,264:0:0:264:9480:-853.155,-79.4719,0	0/1:50:18,32:18:635:32:1144:-87.9469,0,-42.4255	0/1:16:9,7:9:324:7:250:-18.0214,0,-24.6894	0/1:68:18,50:18:631:50:1788:-140.733,0,-36.6456	1/1:16:0,15:0:0:15:536:-48.2152,-4.51545,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:80:55,25:55:1976:25:892:-56.5173,0,-154.032	1/1:195:0,195:0:0:195:6971:-627.449,-58.7009,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:110:0,110:0:0:110:3939:-354.701,-33.1133,0	1/1:129:0,129:0:0:129:4631:-416.952,-38.8329,0	0/1:89:49,40:49:1760:40:1432:-102.381,0,-131.892	1/1:87:0,87:0:0:87:3117:-280.757,-26.1896,0	1/1:65:1,64:1:36:64:2285:-202.312,-15.9687,0	1/1:118:1,117:1:36:117:4200:-374.582,-31.9233,0	1/1:51:4,47:4:144:47:1684:-138.533,-2.03891,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:110:1,109:1:36:109:3920:-349.393,-29.515,0	0/1:25:11,14:11:392:14:504:-38.1723,0,-28.0943	0/1:122:60,62:60:2144:62:2224:-163.698,0,-156.502	0/1:64:34,30:34:1216:30:1080:-78.245,0,-90.4806	0/1:151:95,56:95:3392:56:1999:-134.681,0,-260.04	1/1:93:0,93:0:0:93:3348:-301.533,-27.9958,0	1/1:72:0,72:0:0:72:2578:-232.268,-21.6742,0	1/1:103:0,103:0:0:103:3696:-332.652,-31.0061,0	0/1:11:4,7:4:144:7:248:-19.3505,0,-10.0023	1/1:99:0,99:0:0:99:3560:-320.607,-29.802,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:143:0,143:0:0:143:5120:-460.94,-43.0473,0	0/1:150:65,85:65:2328:85:3060:-230.473,0,-164.625	1/1:109:0,109:0:0:109:3904:-351.553,-32.8123,0	0/1:112:53,58:53:1908:58:2088:-154.416,0,-138.223	1/1:204:0,204:0:0:204:7331:-659.786,-61.4101,0	0/1:55:24,31:24:860:31:1112:-83.8347,0,-61.1652	1/1:104:0,104:0:0:104:3740:-336.799,-31.3071,0	1/1:98:0,98:0:0:98:3507:-315.84,-29.5009,0	0/1:82:40,42:40:1440:42:1496:-110.25,0,-105.213	0/1:116:57,59:57:2048:59:2111:-155.335,0,-149.672	0/1:73:53,20:53:1900:20:716:-42.7925,0,-149.289	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:126:1,125:1:36:125:4477:-399.482,-34.3315,0
chr06	6903733	.	GGGT	AGGT,AGGA	164102	PASS	AB=0.51456,0.481237;ABP=9.14401,13.1962;AC=143,45;AF=0.760638,0.239362;AN=188;AO=5927,1614;CIGAR=1X3M,1X2M1X;DP=7566;DPB=7566;DPRA=0,0.893832;EPP=12760.7,3490.42;EPPR=11.6962;GTI=2;LEN=1,4;MEANALT=1.80851,2.23636;MQM=59.4017,59.2776;MQMR=56.25;NS=94;NUMALT=2;ODDS=0.348234;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=212298,56887;QR=136;RO=4;RPL=12,1;RPP=12769.3,3499.09;RPPR=11.6962;RPR=5915,1613;RUN=1,1;SAF=5926,1613;SAP=12864.6,3499.09;SAR=1,1;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:31:0,15,15:0:0:15,15:540,539:-87.9992,-43.9728,-39.4573,-44.0277,0,-39.5123	1/2:108:0,63,45:0:0:63,45:2268,1603:-315.857,-130.963,-111.998,-185.251,0,-171.705	1/2:108:0,56,51:0:0:56,51:2008,1793:-309.734,-145.96,-129.102,-163.847,0,-148.495	1/1:104:0,104,0:0:0:104,0:3724,0:-335.239,-31.3071,0,-335.239,-31.3071,-335.239	1/1:52:0,51,1:0:0:51,1:1817,25:-163.443,-15.3525,0,-161.497,-13.1553,-161.196	1/1:36:0,36,0:0:0:36,0:1292,0:-116.557,-10.8371,0,-116.557,-10.8371,-116.557	1/1:107:0,106,0:0:0:106,0:3804,0:-342.083,-31.9092,0,-342.083,-31.9092,-342.083	1/2:120:1,59,60:1:36:59,60:2116,2123:-342.156,-169.885,-155.062,-169.631,0,-154.507	1/2:58:0,37,21:0:0:37,21:1332,696:-165.293,-56.6132,-45.4751,-109.022,0,-102.7	1/2:98:0,44,53:0:0:44,53:1584,1862:-280.675,-151.467,-138.221,-129.225,0,-113.27	1/2:28:0,18,10:0:0:18,10:648,358:-82.4137,-29.5388,-24.1203,-53.2333,0,-50.223	1/1:62:0,62,0:0:0:62,0:2228,0:-200.714,-18.6639,0,-200.714,-18.6639,-200.714	1/2:62:0,42,20:0:0:42,20:1508,712:-181.313,-58.3161,-45.6728,-123.354,0,-117.333	1/2:40:0,21,19:0:0:21,19:756,672:-116.724,-55.0352,-48.7136,-62.0456,0,-56.326	1/1:60:0,60,0:0:0:60,0:2160,0:-194.639,-18.0618,0,-194.639,-18.0618,-194.639	1/2:40:0,20,20:0:0:20,20:720,717:-117.497,-58.8151,-52.7945,-59.0407,0,-53.0201	1/2:39:0,19,20:0:0:19,20:684,712:-114.167,-58.3857,-52.6662,-56.1393,0,-50.1187	1/1:44:0,43,1:0:0:43,1:1543,36:-138.797,-12.9443,0,-135.859,-9.64705,-135.558	1/1:42:0,42,0:0:0:42,0:1512,0:-136.331,-12.6433,0,-136.331,-12.6433,-136.331	1/2:436:0,239,195:0:0:239,195:8554,6889:-1258.3,-560.97,-489.024,-697.373,0,-638.672	1/2:92:0,48,44:0:0:48,44:1728,1544:-266.919,-125.968,-111.518,-141.306,0,-128.061	1/1:119:0,119,0:0:0:119,0:4238,0:-381.287,-35.8226,0,-381.287,-35.8226,-381.287	1/2:68:0,30,38:0:0:30,38:1080,1343:-197.823,-109.697,-100.666,-88.4823,0,-77.0432	1/2:99:0,52,46:0:0:52,46:1864,1639:-285.569,-133.541,-117.888,-152.036,0,-138.189	1/2:65:0,41,23:0:0:41,23:1472,813:-186.236,-66.1878,-53.8456,-120.046,0,-113.122	1/1:211:0,211,0:0:0:211,0:7534,0:-678.015,-63.5173,0,-678.015,-63.5173,-678.015	1/1:184:0,183,1:0:0:183,1:6560,30:-590.016,-55.0885,0,-587.623,-52.3963,-587.322	1/1:37:0,37,0:0:0:37,0:1317,0:-118.8,-11.1381,0,-118.8,-11.1381,-118.8	1/2:211:0,110,100:0:0:110,100:3956,3525:-609.559,-286.905,-253.792,-322.649,0,-292.546	1/2:120:0,68,52:0:0:68,52:2406,1836:-345.759,-149.835,-129.365,-196.278,0,-180.624	1/1:100:0,100,0:0:0:100,0:3584,0:-322.712,-30.103,0,-322.712,-30.103,-322.712	1/2:10:0,6,4:0:0:6,4:216,144:-29.7233,-12.1095,-10.3033,-17.9735,0,-16.7694	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:7:0,5,2:0:0:5,2:180,70:-20.7395,-6.04534,-4.54019,-15.0469,0,-14.4449	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/2:147:0,68,79:0:0:68,79:2448,2799:-428.076,-228.37,-207.9,-200.063,0,-176.282	1/1:132:0,132,0:0:0:132,0:4748,0:-427.318,-39.736,0,-427.318,-39.736,-427.318	1/2:48:0,22,26:0:0:22,26:792,910:-138.998,-74.3875,-67.7648,-64.9654,0,-57.1386	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:213:0,213,0:0:0:213,0:7643,0:-687.159,-64.1194,0,-687.159,-64.1194,-687.159	1/1:54:0,54,0:0:0:54,0:1940,0:-174.804,-16.2556,0,-174.804,-16.2556,-174.804	1/2:142:0,68,73:0:0:68,73:2421,2562:-405.807,-208.508,-188.038,-197.351,0,-175.376	1/2:54:0,22,32:0:0:22,32:792,1143:-158.162,-93.5377,-86.915,-64.983,0,-55.3501	1/2:60:0,35,25:0:0:35,25:1256,858:-172.354,-69.8968,-59.3607,-102.807,0,-95.2811	1/1:88:0,88,0:0:0:88,0:3126,0:-281.511,-26.4906,0,-281.511,-26.4906,-281.511	1/2:105:0,49,56:0:0:49,56:1764,1978:-305.301,-161.382,-146.632,-144.276,0,-127.418	1/1:144:3,140,0:3:100:140,0:5009,0:-441.555,-34.0788,0,-442.458,-42.1442,-450.542	1/1:74:0,74,0:0:0:74,0:2652,0:-238.881,-22.2762,0,-238.881,-22.2762,-238.881	1/2:149:0,74,74:0:0:74,74:2656,2635:-431.286,-214.662,-192.385,-216.624,0,-194.348	1/2:57:0,36,21:0:0:36,21:1296,743:-166.594,-60.8664,-50.0294,-106.084,0,-99.7622	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:90:0,90,0:0:0:90,0:3215,0:-289.451,-27.0927,0,-289.451,-27.0927,-289.451	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:25:0,9,16:0:0:9,16:309,567:-71.6293,-46.545,-43.8357,-25.4314,0,-20.615	1/2:103:0,58,44:0:0:58,44:2055,1534:-291.757,-124.711,-107.251,-167.039,0,-153.794	1/1:40:0,39,1:0:0:3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chr06	6903766	.	A	G	121333	PASS	AB=0.522847;ABP=17.5964;AC=143;AF=0.760638;AN=188;AO=5797;CIGAR=1X;DP=7345;DPB=7345;DPRA=0;EPP=12573.7;EPPR=3353.59;GTI=2;LEN=1;MEANALT=1.05319;MQM=59.3792;MQMR=59.3448;NS=94;NUMALT=1;ODDS=1.48603;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204520;QR=54713;RO=1543;RPL=5796;RPP=12582.4;RPPR=3353.59;RPR=1;RUN=1;SAF=5796;SAP=12582.4;SAR=1;SRF=1543;SRP=3353.59;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:15,16:15:540:16:572:-42.4285,0,-39.6046	0/1:105:44,61:44:1552:61:2145:-161.54,0,-108.314	0/1:106:50,56:50:1779:56:1962:-144.922,0,-128.413	1/1:106:1,104:1:36:104:3643:-324.441,-28.2948,0	1/1:49:0,49:0:0:49:1712:-154.275,-14.7505,0	1/1:34:0,34:0:0:34:1182:-106.662,-10.235,0	1/1:106:0,106:0:0:106:3782:-340.456,-31.9092,0	0/1:116:58,58:58:2067:58:2071:-151.721,0,-151.355	0/1:54:19,35:19:672:35:1231:-94.8376,0,-44.4998	0/1:92:48,44:48:1673:44:1552:-112.244,0,-123.046	0/1:28:10,18:10:352:18:636:-49.1392,0,-23.5755	1/1:57:0,57:0:0:57:1976:-178.043,-17.1587,0	0/1:63:20,43:20:698:43:1502:-116.492,0,-44.1472	0/1:40:19,21:19:680:21:740:-54.8822,0,-49.4136	1/1:56:0,56:0:0:56:1971:-177.62,-16.8577,0	0/1:40:20,20:20:699:20:691:-50.4284,0,-51.1688	0/1:38:20,18:20:720:18:629:-45.4714,0,-53.6896	1/1:43:1,42:1:36:42:1486:-130.417,-9.34602,0	1/1:42:0,42:0:0:42:1477:-133.179,-12.6433,0	0/1:422:182,239:182:6464:239:8516:-639.225,0,-454.651	0/1:86:40,46:40:1415:46:1627:-120.8,0,-101.74	1/1:116:0,116:0:0:116:4116:-370.501,-34.9195,0	0/1:65:36,29:36:1280:29:1012:-71.8216,0,-95.9088	0/1:94:45,49:45:1604:49:1702:-125.16,0,-116.261	0/1:60:23,37:23:820:37:1316:-100.641,0,-56.0383	1/1:213:0,213:0:0:213:7571:-681.355,-64.1194,0	1/1:179:0,179:0:0:179:6344:-570.873,-53.8844,0	1/1:37:0,37:0:0:37:1290:-116.369,-11.1381,0	0/1:207:97,110:97:3434:110:3932:-291.667,0,-246.748	0/1:116:51,64:51:1800:64:2283:-170.707,0,-127.275	1/1:96:0,95:0:0:95:3382:-304.186,-28.5979,0	0/1:10:4,6:4:135:6:200:-15.3148,0,-9.47221	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:7:2,5:2:68:5:171:-13.6182,0,-4.3505	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:145:78,67:78:2780:67:2376:-170.406,0,-206.792	1/1:131:0,131:0:0:131:4652:-418.7,-39.4349,0	0/1:46:26,20:26:919:20:699:-49.3674,0,-69.1788	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:213:0,213:0:0:213:7477:-672.26,-64.1194,0	1/1:55:1,54:1:36:54:1905:-168.068,-12.9584,0	0/1:134:67,67:67:2378:67:2362:-172.475,0,-173.877	0/1:54:31,22:31:1112:22:784:-54.5697,0,-84.0632	0/1:57:25,32:25:879:32:1131:-84.9381,0,-61.8537	1/1:84:0,84:0:0:84:2964:-266.966,-25.2865,0	0/1:102:53,49:53:1883:49:1756:-127.619,0,-138.992	1/1:140:0,140:0:0:140:4880:-439.236,-42.1442,0	1/1:74:0,74:0:0:74:2652:-238.881,-22.2762,0	0/1:144:71,73:71:2518:73:2585:-189.52,0,-183.432	0/1:54:18,36:18:640:36:1288:-99.9449,0,-41.6704	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:88:0,88:0:0:88:3108:-279.892,-26.4906,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:25:16,9:16:572:9:311:-20.798,0,-44.2877	0/1:95:40,55:40:1425:55:1942:-145.52,0,-99.2527	1/1:39:0,39:0:0:39:1373:-123.835,-11.7402,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:11:3,8:3:104:8:281:-22.2302,0,-6.38303	0/1:31:20,11:20:695:11:372:-24.4719,0,-53.5395	1/1:93:1,92:1:36:92:3246:-288.648,-24.3975,0	0/1:8:4,4:4:135:4:144:-10.9054,0,-10.0743	1/1:191:0,191:0:0:191:6802:-612.056,-57.4967,0	1/1:141:0,141:0:0:141:4985:-448.64,-42.4452,0	0/1:66:38,28:38:1351:28:972:-67.9141,0,-101.932	1/1:69:0,69:0:0:69:2459:-221.541,-20.7711,0	1/1:123:0,123:0:0:123:4316:-388.516,-37.0267,0	1/1:87:2,85:2:72:85:2981:-261.622,-19.3529,0	1/1:15:0,15:0:0:15:520:-47.1038,-4.51545,0	1/1:74:0,74:0:0:74:2593:-233.556,-22.2762,0	1/1:46:0,46:0:0:46:1590:-143.368,-13.8474,0	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/1:63:21,42:21:752:42:1432:-110.155,0,-49.0028	0/1:60:39,21:39:1387:21:752:-49.9445,0,-107.049	0/1:60:28,32:28:986:32:1116:-82.5258,0,-70.9333	1/1:137:0,137:0:0:137:4825:-434.08,-41.2411,0	1/1:85:0,85:0:0:85:3002:-270.386,-25.5876,0	1/1:125:1,124:1:36:124:4417:-393.949,-34.0305,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:70:1,69:1:36:69:2455:-217.55,-17.4738,0	1/1:97:0,97:0:0:97:3399:-306.002,-29.1999,0	1/1:153:1,152:1:36:152:5408:-483.178,-42.4593,0	1/1:104:0,104:0:0:104:3639:-327.596,-31.3071,0	1/1:52:0,52:0:0:52:1819:-163.988,-15.6536,0	0/1:70:33,37:33:1180:37:1304:-96.5746,0,-85.4074	1/1:136:0,136:0:0:136:4784:-430.693,-40.9401,0	0/1:37:15,22:15:528:22:771:-58.4941,0,-36.6947	1/1:64:0,64:0:0:64:2218:-199.858,-19.2659,0	1/1:61:0,61:0:0:61:2102:-189.385,-18.3628,0	1/1:28:0,28:0:0:28:983:-88.6253,-8.42884,0	0/1:79:43,36:43:1521:36:1248:-88.7237,0,-113.377	0/1:62:46,16:46:1620:16:568:-32.788,0,-127.409	1/1:108:2,106:2:72:106:3728:-328.785,-25.677,0	1/1:76:0,76:0:0:76:2646:-238.338,-22.8783,0
chr06	6907385	.	C	G	152450	PASS	AB=0.535444;ABP=41.955;AC=144;AF=0.765957;AN=188;AO=7083;CIGAR=1X;DP=8755;DPB=8755;DPRA=0;EPP=15383.5;EPPR=3622.85;GTI=4;LEN=1;MEANALT=1.05319;MQM=59.9983;MQMR=60;NS=94;NUMALT=1;ODDS=0.878723;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253332;QR=59745;RO=1667;RPL=0;RPP=15383.5;RPPR=3622.85;RPR=7083;RUN=1;SAF=7083;SAP=15383.5;SAR=0;SRF=1667;SRP=3622.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:8,22:8:288:22:792:-62.5748,0,-17.2365	0/1:99:51,48:51:1820:48:1720:-125.284,0,-134.279	0/1:95:49,46:49:1756:46:1644:-119.651,0,-129.726	1/1:119:0,119:0:0:119:4241:-381.87,-35.8226,0	1/1:88:2,86:2:72:86:3088:-271.311,-19.6539,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:127:0,126:0:0:126:4528:-407.326,-37.9298,0	0/1:132:65,66:65:2328:66:2323:-169.531,0,-169.985	0/1:99:44,55:44:1576:55:1976:-148.313,0,-112.33	0/1:77:26,51:26:936:51:1832:-141.981,0,-61.3802	0/1:62:27,35:27:972:35:1260:-95.0416,0,-69.134	1/1:98:0,98:0:0:98:3516:-316.649,-29.5009,0	0/1:82:34,48:34:1224:48:1724:-130.761,0,-85.7826	0/1:71:25,46:25:900:46:1633:-125.883,0,-59.9479	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/1:68:25,43:25:896:43:1548:-119.143,0,-60.4903	0/1:76:36,40:36:1284:40:1419:-105.128,0,-92.9851	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:84:1,83:1:36:83:2984:-265.193,-21.6882,0	0/1:134:69,65:69:2472:65:2321:-168.81,0,-182.396	0/1:120:61,59:61:2184:59:2116:-154.585,0,-160.702	1/1:106:0,106:0:0:106:3808:-342.916,-31.9092,0	0/1:77:39,38:39:1396:38:1352:-98.8011,0,-102.76	0/1:107:54,53:54:1940:53:1893:-138.436,0,-142.666	0/1:98:66,32:66:2372:32:1144:-73.7686,0,-184.237	1/1:327:0,327:0:0:327:11659:-1049.18,-98.4368,0	1/1:214:0,213:0:0:213:7617:-685.207,-64.1194,0	1/1:46:0,45:0:0:45:1597:-143.659,-13.5464,0	0/1:141:57,84:57:2048:84:2982:-226.165,0,-142.146	0/1:94:34,60:34:1220:60:2137:-164.299,0,-81.81	1/1:103:2,101:2:72:101:3585:-316.021,-24.1694,0	0/1:14:7,7:7:248:7:237:-17.4446,0,-18.4498	1/1:19:0,19:0:0:19:669:-60.5339,-5.71957,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:262:123,139:123:4396:139:4937:-365.611,0,-316.944	1/1:203:0,203:0:0:203:7228:-650.567,-61.1091,0	0/1:87:41,46:41:1468:46:1652:-122.779,0,-106.226	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:107:0,107:0:0:107:3848:-346.514,-32.2102,0	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	0/1:96:47,49:47:1688:49:1737:-127.714,0,-123.308	0/1:99:41,58:41:1453:58:2088:-158.388,0,-101.262	0/1:68:26,42:26:932:42:1504:-115.185,0,-63.7288	1/1:115:0,115:0:0:115:4120:-370.984,-34.6185,0	0/1:121:77,44:77:2764:44:1565:-104.715,0,-212.576	1/1:172:0,172:0:0:172:6136:-552.341,-51.7772,0	1/1:117:0,117:0:0:117:4208:-378.899,-35.2205,0	0/1:96:43,53:43:1540:53:1896:-142.019,0,-109.994	0/1:147:68,79:68:2444:79:2813:-209.157,0,-175.963	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:138:0,137:0:0:137:4904:-441.152,-41.2411,0	1/1:80:0,80:0:0:80:2853:-257.007,-24.0824,0	0/1:32:6,26:6:216:26:913:-72.851,0,-10.1576	0/1:63:30,33:30:1072:33:1173:-86.9107,0,-77.8276	1/1:83:0,83:0:0:83:2944:-265.193,-24.9855,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:50:29,21:29:1040:21:752:-52.9548,0,-78.8629	1/1:146:0,146:0:0:146:5248:-472.454,-43.9504,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:138:0,138:0:0:138:4960:-446.546,-41.5421,0	1/1:207:0,207:0:0:207:7424:-668.202,-62.3132,0	0/1:73:33,40:33:1188:40:1440:-107.923,0,-85.2534	1/1:35:0,35:0:0:35:1255:-113.255,-10.5361,0	1/1:180:0,180:0:0:180:6398:-575.91,-54.1854,0	1/1:86:2,84:2:72:84:3012:-264.474,-19.0519,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	1/1:111:0,111:0:0:111:3969:-357.399,-33.4143,0	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/1:117:51,66:51:1828:66:2349:-176.447,0,-129.58	0/1:76:30,46:30:1076:46:1644:-125.37,0,-74.2746	0/1:117:57,60:57:2032:60:2148:-158.367,0,-147.932	1/1:119:0,119:0:0:119:4253:-382.948,-35.8226,0	1/1:93:0,93:0:0:93:3344:-301.176,-27.9958,0	1/1:75:1,74:1:36:74:2664:-236.407,-18.979,0	0/1:16:2,14:2:72:14:504:-40.8816,0,-2.02024	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:239:0,239:0:0:239:8557:-770.126,-71.9462,0	1/1:127:0,127:0:0:127:4540:-408.767,-38.2308,0	1/1:79:0,79:0:0:79:2821:-254.128,-23.7814,0	0/1:106:50,56:50:1792:56:2008:-149.084,0,-129.653	1/1:184:2,182:2:72:182:6532:-581.124,-48.5528,0	0/1:37:20,17:20:716:17:589:-42.1952,0,-53.6296	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	0/1:98:45,53:45:1620:53:1904:-142.137,0,-116.589	0/1:73:39,34:39:1400:34:1212:-87.4111,0,-104.324	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	1/1:126:0,126:0:0:126:4473:-402.738,-37.9298,0
chr06	6923387	.	G	T	28836.8	PASS	AB=0.3485;ABP=1225.5;AC=44;AF=0.234043;AN=188;AO=2146;CIGAR=1X;DP=15944;DPB=15944;DPRA=0.815288;EPP=4662.99;EPPR=29902;GTI=5;LEN=1;MEANALT=1.20408;MQM=59.979;MQMR=59.827;NS=94;NUMALT=1;ODDS=3.61573;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76326;QR=487477;RO=13773;RPL=1;RPP=4654.31;RPPR=41.6413;RPR=2145;RUN=1;SAF=1;SAP=4654.31;SAR=2145;SRF=6638;SRP=41.9541;SRR=7135;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:44,23:44:1555:23:820:-53.9535,0,-120.072	0/1:202:133,69:133:4736:69:2452:-160.127,0,-365.583	0/1:123:79,44:79:2787:44:1562:-103.843,0,-213.71	0/0:378:370,0:370:13136:0:0:0,-111.381,-1181.57	0/0:89:89,0:89:3160:0:0:0,-26.7917,-284.624	0/0:97:97,0:97:3408:0:0:0,-29.1999,-306.9	0/0:422:422,0:422:14960:0:0:0,-127.035,-1346.07	0/1:205:146,59:146:5157:59:2112:-128.638,0,-402.54	0/1:118:76,42:76:2671:42:1491:-98.9623,0,-205.097	0/1:163:98,65:98:3483:65:2305:-158.595,0,-264.594	0/1:117:58,59:58:2023:59:2111:-155.038,0,-147.117	0/0:162:162,0:162:5701:0:0:0,-48.7669,-513.196	0/1:129:86,43:86:3050:43:1544:-100.42,0,-235.897	0/1:181:99,82:99:3523:82:2935:-209.897,0,-262.776	0/0:165:165,0:165:5855:0:0:0,-49.6699,-527.058	0/1:94:64,29:64:2267:29:1035:-65.1075,0,-175.909	0/1:106:54,52:54:1904:52:1864:-136.13,0,-139.721	0/0:169:169,0:169:5928:0:0:0,-50.8741,-532.817	0/0:101:101,0:101:3567:0:0:0,-30.404,-321.237	0/1:305:212,91:212:7578:91:3202:-196.832,0,-590.258	0/1:262:180,81:180:6384:81:2900:-182.307,0,-495.713	0/0:132:132,0:132:4683:0:0:0,-39.736,-421.545	0/1:143:102,41:102:3603:41:1453:-88.0175,0,-281.43	0/1:209:149,60:149:5306:60:2144:-130.312,0,-414.73	0/1:115:78,37:78:2735:37:1312:-83.7632,0,-211.729	0/0:430:428,1:428:15139:1:36:0,-125.903,-1358.62	0/0:307:307,0:307:10859:0:0:0,-92.4162,-977.146	0/0:111:111,0:111:3944:0:0:0,-33.4143,-355.142	0/1:329:254,73:254:9020:73:2594:-134.931,0,-712.999	0/1:166:106,60:106:3778:60:2122:-141.277,0,-290.223	0/0:217:217,0:217:7618:0:0:0,-65.3235,-685.604	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0642	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:326:215,111:215:7600:111:3933:-256.029,0,-585.895	0/0:236:236,0:236:8354:0:0:0,-71.0431,-751.834	0/1:115:69,46:69:2436:46:1613:-110.809,0,-184.841	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3584	0/0:359:359,0:359:12723:0:0:0,-108.07,-1144.31	0/0:92:91,1:91:3229:1:36:0,-24.0965,-287.234	0/1:171:112,59:112:3957:59:2086:-136.533,0,-304.846	0/1:182:119,62:119:4185:62:2208:-144.139,0,-321.808	0/1:127:85,42:85:2977:42:1499:-96.973,0,-229.921	0/0:191:191,0:191:6768:0:0:0,-57.4967,-609.077	0/1:127:78,49:78:2765:49:1722:-117.03,0,-210.859	0/0:260:260,0:260:9265:0:0:0,-78.2678,-833.79	0/0:226:226,0:226:8027:0:0:0,-68.0328,-722.421	0/1:159:113,45:113:3981:45:1591:-95.5956,0,-310.58	0/1:240:151,89:151:5308:89:3164:-212.739,0,-405.609	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:352:350,1:350:12368:1:32:0,-102.802,-1109.74	0/0:80:80,0:80:2837:0:0:0,-24.0824,-255.565	0/1:17:2,15:2:72:15:536:-43.4573,0,-1.71921	0/1:187:135,52:135:4812:52:1852:-110.667,0,-376.92	0/0:109:109,0:109:3835:0:0:0,-32.8123,-345.328	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:13:4,9:4:135:9:320:-25.229,0,-8.56912	0/1:111:69,42:69:2411:42:1487:-100.709,0,-183.795	0/0:268:268,0:268:9458:0:0:0,-80.676,-851.18	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	0/0:295:295,0:295:10500:0:0:0,-88.8038,-944.892	0/0:301:296,5:296:10515:5:180:0,-74.058,-929.677	0/1:141:91,50:91:3212:50:1784:-118.398,0,-246.785	0/0:173:173,0:173:6095:0:0:0,-52.0782,-548.622	0/0:277:277,0:277:9830:0:0:0,-83.3853,-883.731	0/0:240:240,0:240:8530:0:0:0,-72.2472,-767.331	0/0:100:100,0:100:3524:0:0:0,-30.103,-317.354	0/0:219:217,0:217:7692:0:0:0,-65.3235,-691.911	0/0:162:162,0:162:5709:0:0:0,-48.7669,-513.927	0/1:23:12,11:12:423:11:392:-28.6964,0,-31.4814	0/1:135:85,50:85:3008:50:1784:-120.204,0,-230.277	0/1:115:82,32:82:2877:32:1140:-68.2321,0,-224.488	0/1:344:190,153:190:6726:153:5439:-386.029,0,-501.801	0/0:286:286,0:286:10137:0:0:0,-86.0946,-912.211	0/0:103:103,0:103:3665:0:0:0,-31.0061,-330.036	0/0:163:163,0:163:5765:0:0:0,-49.0679,-518.897	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:226:226,0:226:8010:0:0:0,-68.0328,-720.928	0/0:227:227,0:227:8075:0:0:0,-68.3338,-726.648	0/0:432:431,0:431:15167:0:0:0,-129.744,-1364.31	0/0:197:197,0:197:6965:0:0:0,-59.3029,-626.897	0/0:191:190,1:190:6745:1:36:0,-53.8985,-603.511	0/1:177:123,54:123:4371:54:1932:-120.874,0,-340.272	0/0:324:324,0:324:11454:0:0:0,-97.5337,-1030.72	0/1:69:44,25:44:1522:25:875:-58.2951,0,-116.479	0/0:169:169,0:169:5997:0:0:0,-50.8741,-539.803	0/0:168:168,0:168:5926:0:0:0,-50.573,-533.429	0/0:116:116,0:116:4121:0:0:0,-34.9195,-371.075	0/1:159:99,60:99:3456:60:2148:-145.724,0,-263.355	0/1:125:63,62:63:2252:62:2219:-162.345,0,-165.308	0/0:186:186,0:186:6570:0:0:0,-55.9916,-591.369	0/0:265:263,0:263:9294:0:0:0,-79.1709,-836.015
chr06	6950118	.	T	C	105305	PASS	AB=0.479272;ABP=14.0828;AC=140;AF=0.752688;AN=186;AO=5404;CIGAR=1X;DP=6971;DPB=6971;DPRA=18.9321;EPP=11737.6;EPPR=3394.85;GTI=2;LEN=1;MEANALT=1.05435;MQM=38.517;MQMR=59.5051;NS=93;NUMALT=1;ODDS=0.482156;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192817;QR=55851;RO=1562;RPL=0;RPP=11737.6;RPPR=3394.85;RPR=5404;RUN=1;SAF=5404;SAP=11737.6;SAR=0;SRF=1562;SRP=3394.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:11,20:11:392:20:708:-50.7714,0,-26.2717	0/1:130:77,53:77:2752:53:1908:-118.816,0,-208.701	0/1:78:43,35:43:1536:35:1230:-80.1543,0,-115.025	1/1:153:0,153:0:0:153:5427:-463.75,-46.0576,0	1/1:60:1,59:1:36:59:2120:-178.817,-14.4635,0	1/1:60:0,60:0:0:60:2152:-179.376,-18.0618,0	1/1:84:0,84:0:0:84:3012:-258.362,-25.2865,0	0/1:147:68,79:68:2432:79:2824:-193.536,0,-174.797	0/1:89:48,41:48:1724:41:1464:-94.5029,0,-128.62	0/1:121:87,34:87:3103:34:1212:-67.8462,0,-242.99	0/1:20:15,5:15:531:5:180:-9.72797,0,-42.1013	1/1:32:0,32:0:0:32:1140:-95.4113,-9.63296,0	0/1:45:29,16:29:1040:16:567:-34.6815,0,-80.274	0/1:32:22,10:22:784:10:351:-20.8687,0,-61.246	1/1:32:0,32:0:0:32:1131:-95.6594,-9.63296,0	0/1:35:24,11:24:856:11:396:-22.6044,0,-66.8158	0/1:34:16,18:16:567:18:648:-44.57,0,-41.1175	1/1:27:0,27:0:0:27:964:-80.3231,-8.12781,0	1/1:6:0,6:0:0:6:216:-18.6318,-1.80618,0	0/1:130:59,71:59:2120:71:2536:-175.466,0,-151.914	0/1:108:63,45:63:2264:45:1608:-105.795,0,-171.368	1/1:136:0,136:0:0:136:4836:-409.791,-40.9401,0	0/1:123:54,69:54:1927:69:2456:-172.844,0,-136.493	0/1:122:52,70:52:1868:70:2501:-176.309,0,-131.663	0/1:43:12,31:12:428:31:1108:-80.5215,0,-25.9145	1/1:361:3,358:3:108:358:12815:-1081.02,-98.5967,0	1/1:143:0,142:0:0:142:5076:-435.528,-42.7463,0	1/1:12:0,12:0:0:12:432:-36.7515,-3.61236,0	0/1:171:79,92:79:2828:92:3269:-227.251,0,-203.275	0/1:139:56,83:56:2016:83:2956:-211.261,0,-139.861	1/1:92:1,91:1:36:91:3217:-271.514,-24.0965,0	0/1:6:4,2:4:144:2:72:-4.69381,0,-11.5074	1/1:6:0,6:0:0:6:216:-18.9004,-1.80618,0	0/1:5:2,3:2:72:3:108:-7.2065,0,-5.33157	1/1:3:0,3:0:0:3:108:-9.48528,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.3876,-0.30103,0	0/1:87:47,40:47:1688:40:1423:-95.4799,0,-126.003	1/1:209:0,209:0:0:209:7394:-634.482,-62.9153,0	0/1:14:8,6:8:288:6:212:-14.1562,0,-22.053	.:.:.:.:.:.:.:.	1/1:113:0,113:0:0:113:4036:-345.485,-34.0164,0	1/1:7:0,7:0:0:7:252:-22.1087,-2.10721,0	0/1:113:37,76:37:1313:76:2682:-196.242,0,-84.3946	0/1:39:20,19:20:707:19:680:-46.8719,0,-51.9364	0/1:35:22,13:22:788:13:468:-29.8905,0,-60.7025	1/1:96:0,96:0:0:96:3439:-292.92,-28.8989,0	0/1:98:50,48:50:1787:48:1724:-116.925,0,-130.96	1/1:205:1,203:1:36:203:7242:-611.642,-58.1629,0	1/1:116:0,115:0:0:115:4105:-348.033,-34.6185,0	0/1:83:47,36:47:1688:36:1281:-84.3629,0,-127.215	0/1:160:92,68:92:3304:68:2420:-158.363,0,-249.376	0/1:8:1,7:1:36:7:252:-16.6685,0,-1.19003	1/1:89:0,89:0:0:89:3176:-267.224,-26.7917,0	1/1:44:0,44:0:0:44:1576:-133.739,-13.2453,0	0/1:16:6,10:6:212:10:360:-26.0107,0,-14.6	0/1:99:60,39:60:2136:39:1385:-88.2083,0,-162.616	1/1:80:0,80:0:0:80:2868:-244.274,-24.0824,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3052	0/1:12:9,3:9:320:3:108:-5.97372,0,-25.5218	0/1:56:24,32:24:852:32:1136:-80.6963,0,-60.1427	1/1:71:1,70:1:36:70:2504:-209.998,-17.7749,0	0/1:9:2,7:2:72:7:252:-19.2018,0,-4.12745	1/1:166:0,166:0:0:166:5894:-503.401,-49.971,0	1/1:188:2,185:2:72:185:6612:-554.438,-49.7154,0	0/1:71:47,24:47:1676:24:860:-53.0221,0,-129.746	1/1:67:0,67:0:0:67:2373:-202.908,-20.169,0	1/1:125:2,123:2:68:123:4416:-369.621,-31.171,0	1/1:105:1,104:1:36:104:3724:-313.315,-28.0099,0	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	1/1:62:0,62:0:0:62:2200:-187.028,-18.6639,0	1/1:68:0,68:0:0:68:2448:-206.903,-20.47,0	0/1:11:9,2:9:324:2:72:-3.19351,0,-26.1883	0/1:90:52,38:52:1864:38:1345:-85.8305,0,-140.934	0/1:44:20,24:20:704:24:860:-58.9705,0,-50.4359	0/1:154:73,81:73:2624:81:2881:-202.79,0,-190.035	1/1:114:0,114:0:0:114:4067:-347.855,-34.3174,0	1/1:131:0,131:0:0:131:4683:-389.623,-39.4349,0	1/1:62:1,60:1:36:60:2144:-177.863,-15.1138,0	0/1:8:7,1:7:248:1:32:-0.0946564,0,-20.2442	1/1:76:0,76:0:0:76:2732:-235.502,-22.8783,0	1/1:69:0,69:0:0:69:2452:-206.898,-20.7711,0	1/1:191:0,191:0:0:191:6814:-577.974,-57.4967,0	1/1:82:0,82:0:0:82:2940:-249.291,-24.6845,0	1/1:21:0,21:0:0:21:752:-64.7701,-6.32163,0	0/1:57:35,22:35:1243:22:780:-49.6788,0,-95.009	1/1:77:0,77:0:0:77:2764:-235.556,-23.1793,0	0/1:39:19,20:19:675:20:711:-47.4228,0,-49.3286	1/1:44:0,44:0:0:44:1567:-132.757,-13.2453,0	1/1:31:0,31:0:0:31:1103:-93.9445,-9.33193,0	1/1:3:0,3:0:0:3:108:-8.75083,-0.90309,0	0/1:23:15,8:15:540:8:288:-18.104,0,-42.0036	0/1:32:22,10:22:770:10:360:-21.67,0,-59.9864	1/1:47:0,47:0:0:47:1676:-143.075,-14.1484,0	1/1:32:0,32:0:0:32:1148:-97.9826,-9.63296,0
chr06	6951490	.	G	A	90106.6	PASS	AB=0.494099;ABP=3.57414;AC=140;AF=0.76087;AN=184;AO=3524;CIGAR=1X;DP=4472;DPB=4472;DPRA=0;EPP=3045.34;EPPR=889.157;GTI=2;LEN=1;MEANALT=1.03261;MQM=59.9515;MQMR=60;NS=92;NUMALT=1;ODDS=2.19246;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126070;QR=33892;RO=945;RPL=2873;RPP=3045.34;RPPR=889.157;RPR=651;RUN=1;SAF=3524;SAP=7655.28;SAR=0;SRF=945;SRP=2055.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:46:19,26:19:684:26:932:-70.2927,0,-47.9842	0/1:92:37,55:37:1332:55:1957:-148.709,0,-92.4876	1/1:252:0,252:0:0:252:9012:-810.431,-75.8596,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:41:0,41:0:0:41:1456:-131.336,-12.3422,0	0/1:50:26,24:26:936:24:864:-63.0311,0,-69.508	0/1:33:13,20:13:460:20:720:-55.1902,0,-31.8014	0/1:26:15,11:15:540:11:384:-27.0679,0,-41.1098	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:28:16,12:16:572:12:432:-30.7924,0,-43.3846	0/1:36:20,16:20:712:16:564:-40.2532,0,-53.5696	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:26:14,12:14:500:12:432:-31.3944,0,-37.5094	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:198:99,99:99:3548:99:3552:-260.284,0,-259.924	0/1:69:36,33:36:1296:33:1188:-86.4575,0,-96.1729	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	0/1:80:48,32:48:1724:32:1148:-79.5474,0,-131.363	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/1:44:25,19:25:900:19:680:-48.2838,0,-68.0757	1/1:152:0,152:0:0:152:5454:-490.987,-45.7566,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:168:81,87:81:2912:87:3116:-230.094,0,-211.741	0/1:83:36,47:36:1292:47:1669:-125.502,0,-91.5983	1/1:82:1,81:1:36:81:2874:-255.296,-21.0862,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	.:.:.:.:.:.:.:.	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:73:35,38:35:1252:38:1364:-101.086,0,-91.0099	1/1:75:0,75:0:0:75:2681:-241.524,-22.5773,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:78:0,78:0:0:78:2787:-251.07,-23.4803,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:72:42,30:42:1508:30:1046:-72.2797,0,-114.34	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	1/1:75:0,74:0:0:74:2641:-237.723,-22.2762,0	0/1:47:26,21:26:932:21:752:-53.8578,0,-70.0505	1/1:107:0,107:0:0:107:3825:-344.445,-32.2102,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:41:12,29:12:432:29:1006:-78.5044,0,-26.879	0/1:78:42,35:42:1493:35:1245:-88.8154,0,-111.124	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:73:0,73:0:0:73:2618:-235.868,-21.9752,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:55:27,28:27:968:28:1002:-73.9387,0,-70.8807	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:31:14,17:14:500:17:604:-45.3587,0,-36.0042	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	.:.:.:.:.:.:.:.	1/1:141:0,141:0:0:141:5068:-456.262,-42.4452,0	1/1:87:0,87:0:0:87:3112:-280.307,-26.1896,0	0/1:24:12,12:12:428:12:432:-31.9965,0,-31.6341	1/1:42:0,42:0:0:42:1489:-134.303,-12.6433,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:16:0,16:0:0:16:563:-50.952,-4.81648,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:59:28,31:28:1004:31:1112:-82.6306,0,-72.9151	0/1:34:18,16:18:644:16:561:-40.5821,0,-48.0556	0/1:89:50,39:50:1787:39:1396:-99.1474,0,-134.32	1/1:122:0,122:0:0:122:4356:-392.214,-36.7257,0	1/1:30:0,30:0:0:30:1057:-95.4387,-9.0309,0	1/1:56:0,56:0:0:56:1997:-180.002,-16.8577,0	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	1/1:69:2,67:2:72:67:2408:-210.139,-13.9343,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:150:0,150:0:0:150:5362:-482.709,-45.1545,0	1/1:32:1,31:1:36:31:1112:-96.7931,-6.03469,0	1/1:39:0,39:0:0:39:1404:-126.657,-11.7402,0	0/1:17:12,5:12:432:5:176:-11.0675,0,-34.1037	1/1:42:0,42:0:0:42:1512:-136.368,-12.6433,0	0/1:12:5,7:5:180:7:252:-19.4083,0,-12.9397	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:12:0,12:0:0:12:428:-38.539,-3.61236,0	0/1:41:21,20:21:752:20:712:-52.0644,0,-55.664	0/1:36:20,16:20:720:16:568:-40.6148,0,-54.2917	1/1:79:0,79:0:0:79:2824:-254.399,-23.7814,0	1/1:42:0,42:0:0:42:1511:-136.285,-12.6433,0
chr06	7045230	.	T	A	22304.1	PASS	AB=0.479603;ABP=13.1975;AC=49;AF=0.263441;AN=186;AO=1367;CIGAR=1X;DP=5996;DPB=5996;DPRA=1.059;EPP=2971.41;EPPR=10041.7;GTI=3;LEN=1;MEANALT=1.01961;MQM=59.9583;MQMR=59.9831;NS=93;NUMALT=1;ODDS=0.838863;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48851;QR=165777;RO=4627;RPL=0;RPP=2971.41;RPPR=10050.4;RPR=1367;RUN=1;SAF=1367;SAP=2971.41;SAR=0;SRF=4626;SRP=10041.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:36,33:36:1292:33:1188:-86.4575,0,-95.8127	0/1:53:20,33:20:712:33:1173:-89.921,0,-48.4521	0/1:74:39,35:39:1400:35:1256:-91.0691,0,-104.023	0/0:148:148,0:148:5312:0:0:0,-44.5524,-477.843	0/1:34:25,9:25:900:9:324:-19.2708,0,-71.086	0/1:42:26,16:26:928:16:566:-38.6276,0,-71.1812	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/1:141:76,65:76:2720:65:2321:-166.703,0,-202.598	0/1:104:45,59:45:1616:59:2116:-159.401,0,-114.423	0/1:64:37,27:37:1328:27:968:-68.1714,0,-100.556	0/1:62:43,19:43:1535:19:680:-42.8653,0,-119.778	0/0:108:108,0:108:3865:0:0:0,-32.5112,-348.043	0/1:77:44,33:44:1584:33:1180:-83.3287,0,-119.672	0/1:62:29,33:29:1036:33:1188:-88.5647,0,-74.8901	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/1:74:41,32:41:1476:32:1144:-80.9346,0,-110.801	0/1:42:24,18:24:860:18:648:-46.0086,0,-65.0786	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:69:38,31:38:1368:31:1112:-79.6203,0,-102.65	0/1:110:68,42:68:2444:42:1493:-101.549,0,-187.101	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/1:81:39,42:39:1404:42:1512:-111.991,0,-102.276	0/1:50:30,20:30:1076:20:720:-50.0773,0,-82.1014	0/1:86:38,48:38:1368:48:1709:-128.205,0,-97.5322	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:146:146,0:146:5225:0:0:0,-43.9504,-470.386	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:116:57,59:57:2040:59:2120:-156.149,0,-148.953	0/1:48:27,21:27:972:21:737:-52.2012,0,-73.3485	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:173:86,87:86:3079:87:3128:-229.667,0,-225.259	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/1:58:34,24:34:1216:24:860:-60.2621,0,-92.2868	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:60:28,32:28:1000:32:1129:-83.798,0,-72.2536	0/1:59:23,36:23:828:36:1292:-98.823,0,-57.0833	0/1:54:18,36:18:640:36:1296:-100.688,0,-41.6737	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:60:31,29:31:1112:29:1036:-75.4921,0,-82.3295	0/0:133:132,1:132:4683:1:21:0,-37.937,-419.039	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:46:27,19:27:968:19:680:-47.6818,0,-73.59	0/1:46:19,27:19:684:27:972:-73.9505,0,-48.0429	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:57:56,1:56:1993:1:36:0,-13.5604,-176.044	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:128:68,60:68:2448:60:2137:-154.064,0,-182.038	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:80:46,34:46:1648:34:1205:-84.6715,0,-124.526	0/0:59:58,0:58:2084:0:0:0,-17.4597,-187.47	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:72:72,0:72:2539:0:0:0,-21.6742,-228.757	0/0:145:142,3:142:5070:3:93:0,-34.9726,-447.765	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:59:24,35:24:845:35:1260:-95.9447,0,-58.6063	0/1:59:24,35:24:860:35:1233:-93.4998,0,-59.9611	0/1:163:89,74:89:3196:74:2637:-188.508,0,-238.795	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.059	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	.:.:.:.:.:.:.:.	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:69:69,0:69:2450:0:0:0,-20.7711,-220.752	0/0:144:143,1:143:5124:1:36:0,-39.75,-457.703	0/0:68:66,2:66:2376:2:68:0,-14.0123,-207.64	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.978	0/1:68:37,31:37:1324:31:1097:-78.3402,0,-98.9921	0/0:145:145,0:145:5207:0:0:0,-43.6493,-468.766	0/1:30:17,13:17:612:13:464:-33.0666,0,-46.3825	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:109:63,46:63:2260:46:1652:-116.156,0,-170.85	0/1:69:29,40:29:1044:40:1428:-108.046,0,-73.5037	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:129:129,0:129:4640:0:0:0,-38.8329,-417.76
chr06	7046693	.	C	T	92902.1	PASS	AB=0.479738;ABP=12.2502;AC=142;AF=0.755319;AN=188;AO=4394;CIGAR=1X;DP=5752;DPB=5752;DPRA=0;EPP=9544.46;EPPR=2947.53;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9768;MQMR=60;NS=94;NUMALT=1;ODDS=0.395825;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156662;QR=47624;RO=1356;RPL=4393;RPP=9535.78;RPPR=2947.53;RPR=1;RUN=1;SAF=4393;SAP=9535.78;SAR=1;SRF=1356;SRP=2947.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:35,4:35:1206:4:144:-1.57345,0,-97.0983	0/1:37:17,20:17:608:20:716:-53.6296,0,-43.9139	0/1:133:75,57:75:2642:57:2033:-143.294,0,-198.077	1/1:167:0,167:0:0:167:5933:-534.077,-50.272,0	0/1:23:14,9:14:482:9:324:-22.5822,0,-36.7824	0/1:17:4,13:4:129:13:449:-35.62,0,-6.81015	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	0/1:70:44,26:44:1538:26:936:-63.4874,0,-117.636	0/1:74:31,43:31:1085:43:1540:-116.617,0,-75.6807	0/1:81:46,35:46:1589:35:1252:-88.6016,0,-118.911	0/1:18:9,9:9:302:9:324:-24.0873,0,-22.0866	1/1:68:1,67:1:36:67:2365:-209.509,-16.8718,0	0/1:57:27,30:27:949:30:1076:-79.9941,0,-68.5641	0/1:45:24,21:24:839:21:756:-54.8209,0,-62.2809	1/1:65:0,65:0:0:65:2314:-208.519,-19.567,0	0/1:39:20,19:20:693:19:684:-50.1502,0,-50.9494	0/1:25:11,14:11:373:14:504:-38.1723,0,-26.3695	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:99:45,54:45:1608:54:1907:-142.102,0,-115.208	0/1:121:75,45:75:2612:45:1602:-107.984,0,-198.843	1/1:52:1,51:1:36:51:1828:-161.203,-12.0553,0	0/1:49:31,18:31:1075:18:648:-43.9014,0,-82.3041	0/1:22:12,10:12:415:10:360:-26.1216,0,-31.0576	0/1:27:11,16:11:392:16:561:-42.6893,0,-27.4922	1/1:149:0,149:0:0:149:5333:-480.092,-44.8535,0	1/1:160:0,160:0:0:160:5712:-514.188,-48.1648,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:228:118,110:118:4152:110:3952:-287.235,0,-305.231	0/1:83:50,33:50:1727:33:1180:-81.5226,0,-130.723	1/1:76:0,76:0:0:76:2685:-241.893,-22.8783,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:173:92,81:92:3254:81:2890:-208.257,0,-241.005	1/1:76:0,76:0:0:76:2712:-244.324,-22.8783,0	0/1:28:17,11:17:596:11:392:-27.1912,0,-45.5389	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:26:0,26:0:0:26:907:-81.9444,-7.82678,0	0/1:65:34,31:34:1207:31:1116:-81.1847,0,-89.3683	0/1:44:22,22:22:775:22:774:-56.7341,0,-56.8259	0/1:43:17,26:17:593:26:918:-69.991,0,-40.7504	1/1:56:0,56:0:0:56:1980:-178.472,-16.8577,0	0/1:58:29,29:29:1040:29:1027:-75.2824,0,-76.4546	1/1:100:0,100:0:0:100:3564:-320.597,-30.103,0	1/1:77:0,77:0:0:77:2732:-246.123,-23.1793,0	0/1:108:62,46:62:2207:46:1631:-114.566,0,-166.383	0/1:31:7,24:7:252:24:860:-68.3899,0,-13.697	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	1/1:53:0,53:0:0:53:1891:-170.468,-15.9546,0	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:111:58,53:58:2049:53:1893:-137.232,0,-151.266	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:56:40,16:40:1427:16:576:-35.3173,0,-111.869	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:172:1,171:1:36:171:6082:-543.884,-48.1789,0	1/1:154:2,152:2:68:152:5409:-480.455,-39.9009,0	1/1:38:0,38:0:0:38:1349:-121.708,-11.4391,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:139:3,136:3:104:136:4846:-426.591,-32.1404,0	1/1:94:1,93:1:36:93:3329:-296.229,-24.6985,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:28:0,28:0:0:28:983:-88.7825,-8.42884,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:16:5,11:5:176:11:387:-30.3495,0,-11.3685	0/1:31:17,14:17:604:14:500:-36.0042,0,-45.3587	0/1:78:35,43:35:1224:43:1535:-114.962,0,-86.9805	0/1:143:76,67:76:2663:67:2357:-169.338,0,-196.868	1/1:136:0,136:0:0:136:4848:-436.474,-40.9401,0	1/1:32:0,32:0:0:32:1124:-101.465,-9.63296,0	1/1:60:0,60:0:0:60:2152:-193.939,-18.0618,0	0/1:26:9,17:9:324:17:608:-47.2252,0,-21.6791	1/1:68:1,67:1:36:67:2400:-212.659,-16.8718,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:131:0,131:0:0:131:4691:-422.349,-39.4349,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:49:0,49:0:0:49:1747:-157.514,-14.7505,0	0/1:55:17,38:17:595:38:1364:-106.504,0,-37.32	1/1:95:0,95:0:0:95:3370:-303.516,-28.5979,0	0/1:19:7,12:7:252:12:424:-32.7768,0,-17.3094	1/1:67:0,67:0:0:67:2391:-215.447,-20.169,0	1/1:73:0,73:0:0:73:2597:-233.978,-21.9752,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:107:42,65:42:1472:65:2316:-176.491,0,-100.562	0/1:70:43,27:43:1502:27:963:-65.9138,0,-114.397	1/1:115:0,115:0:0:115:4100:-369.185,-34.6185,0	1/1:69:0,69:0:0:69:2466:-222.194,-20.7711,0
chr06	7046807	.	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chr06	7057228	.	G	A	32355.7	PASS	AB=0.551325;ABP=78.1282;AC=50;AF=0.265957;AN=188;AO=1825;CIGAR=1X;DP=6935;DPB=6935;DPRA=0.936933;EPP=3510.79;EPPR=10062.7;GTI=2;LEN=1;MEANALT=1.01852;MQM=46.0274;MQMR=59.9847;NS=94;NUMALT=1;ODDS=2.20345;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64931;QR=181693;RO=5109;RPL=54;RPP=3510.79;RPPR=10062.7;RPR=1771;RUN=1;SAF=1825;SAP=3965.95;SAR=0;SRF=5109;SRP=11097.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:16,18:16:572:18:644:-47.0512,0,-41.5784	0/1:75:22,53:22:788:53:1878:-144.081,0,-48.6675	0/1:67:17,50:17:582:50:1762:-136.792,0,-32.5298	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965	0/1:26:18,8:18:648:8:288:-18.0866,0,-50.8251	0/1:36:9,27:9:294:27:972:-75.5818,0,-15.9385	0/0:76:76,0:76:2682:0:0:0,-22.8783,-241.623	0/1:167:58,109:58:2039:109:3860:-291.961,0,-133.502	0/1:70:34,36:34:1224:36:1262:-91.0746,0,-89.3949	0/1:89:39,50:39:1381:50:1800:-133.461,0,-97.7951	0/1:49:28,21:28:944:21:756:-52.4882,0,-70.51	0/0:77:77,0:77:2726:0:0:0,-23.1793,-245.581	0/1:111:47,64:47:1677:64:2240:-165.41,0,-117.801	0/1:66:38,28:38:1345:28:1008:-69.9727,0,-101.48	0/0:74:74,0:74:2637:0:0:0,-22.2762,-237.576	0/1:58:28,30:28:1008:30:1080:-78.3487,0,-73.5766	0/1:66:38,28:38:1360:28:1000:-69.1007,0,-102.833	0/0:94:94,0:94:3342:0:0:0,-28.2968,-300.995	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:55:26,29:26:936:29:1040:-76.1616,0,-68.0028	0/1:114:44,70:44:1580:70:2497:-187.202,0,-108.174	0/0:44:44,0:44:1557:0:0:0,-13.2453,-140.417	0/1:63:43,20:43:1529:20:716:-45.2456,0,-118.936	0/1:133:66,67:66:2349:67:2408:-173.254,0,-171.631	0/1:33:21,12:21:752:12:413:-27.1369,0,-58.0723	0/0:230:230,0:230:8173:0:0:0,-69.2369,-735.583	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/1:122:42,80:42:1504:80:2839:-216.033,0,-98.9289	0/1:164:51,113:51:1809:113:3935:-298.955,0,-113.721	0/0:102:101,1:101:3576:1:36:0,-27.1464,-318.484	0/1:10:7,3:7:252:3:108:-6.92554,0,-20.0187	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:10:4,6:4:125:6:212:-15.8555,0,-8.54832	0/1:4:2,2:2:72:2:68:-5.20047,0,-5.6326	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:226:102,124:102:3641:124:4445:-328.829,0,-259.861	0/0:110:110,0:110:3865:0:0:0,-33.1133,-348.043	0/1:59:34,25:34:1220:25:900:-62.6294,0,-92.346	1/1:4:0,4:0:0:4:144:-13.1295,-1.20412,0	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:33:33,0:33:1156:0:0:0,-9.93399,-104.344	0/1:120:49,71:49:1745:71:2526:-187.107,0,-121.209	0/1:71:40,31:40:1413:31:1108:-77.631,0,-106.092	0/1:67:38,29:38:1360:29:1039:-72.6793,0,-102.532	0/0:160:160,0:160:5699:0:0:0,-48.1648,-513.026	0/1:150:60,90:60:2141:90:3179:-237.804,0,-147.801	0/0:150:150,0:150:5330:0:0:0,-45.1545,-479.832	0/0:111:110,1:110:3925:1:36:0,-29.8475,-349.875	0/1:98:53,45:53:1885:45:1586:-111.093,0,-140.426	0/1:93:41,52:41:1453:52:1864:-136.995,0,-103.067	0/1:8:1,7:1:36:7:252:-20.4194,0,-1.19003	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:20:4,16:4:144:16:572:-45.2749,0,-7.29302	0/1:97:21,76:21:748:76:2717:-211.657,0,-38.2865	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	1/1:1:0,1:0:0:1:36:-3.56681,-0.30103,0	0/1:15:4,11:4:144:11:396:-30.8355,0,-8.79817	0/1:49:26,23:26:932:23:798:-56.3885,0,-69.439	0/0:100:99,1:99:3533:1:36:0,-26.5362,-314.611	0/1:9:6,3:6:216:3:104:-6.92283,0,-17.0812	0/0:127:127,0:127:4537:0:0:0,-38.2308,-408.496	0/0:139:139,0:139:4950:0:0:0,-41.8432,-445.649	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/0:29:29,0:29:998:0:0:0,-8.72987,-90.1257	0/0:106:106,0:106:3744:0:0:0,-31.9092,-337.157	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.728	0/1:30:10,20:10:345:20:720:-55.5403,0,-22.3499	0/1:63:24,39:24:849:39:1400:-106.054,0,-57.7629	0/1:76:66,10:66:2364:10:360:-9.50514,0,-190.14	0/1:107:62,44:62:2145:44:1576:-107.108,0,-161.04	0/0:99:99,0:99:3545:0:0:0,-29.802,-319.257	0/0:57:54,3:54:1936:3:108:0,-7.19458,-164.552	0/0:67:66,1:66:2312:1:36:0,-16.6104,-204.776	0/1:13:5,8:5:180:8:284:-21.4398,0,-12.6387	0/0:58:58,0:58:2058:0:0:0,-17.4597,-185.488	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/0:193:193,0:193:6883:0:0:0,-58.0988,-619.536	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/0:71:71,0:71:2509:0:0:0,-21.3731,-226.059	0/1:126:65,61:65:2309:61:2192:-157.188,0,-170.14	0/0:148:145,3:145:5140:3:108:0,-34.5066,-452.694	0/1:38:20,18:20:716:18:633:-45.2801,0,-53.3286	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:60:26,34:26:921:34:1209:-89.1455,0,-65.1434	0/1:66:17,49:17:612:49:1745:-135.874,0,-35.5455	0/0:51:51,0:51:1794:0:0:0,-15.3525,-161.738	0/0:118:118,0:118:4213:0:0:0,-35.5215,-379.35
chr06	7208331	.	A	G	87866.3	PASS	AB=0.479712;ABP=42.2194;AC=90;AF=0.494505;AN=182;AO=5261;CIGAR=1X;DP=10968;DPB=10968;DPRA=121.856;EPP=11427.1;EPPR=12391.3;GTI=1;LEN=1;MEANALT=1.02222;MQM=59.7512;MQMR=56.9627;NS=91;NUMALT=1;ODDS=109.359;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187864;QR=203301;RO=5705;RPL=0;RPP=11427.1;RPPR=12391.3;RPR=5261;RUN=1;SAF=5261;SAP=11427.1;SAR=0;SRF=5705;SRP=12391.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:17,12:17:597:12:432:-30.4913,0,-45.324	0/1:54:39,15:39:1374:15:525:-31.3206,0,-107.603	0/1:82:50,32:50:1800:32:1152:-79.3057,0,-137.579	0/1:446:185,261:185:6591:261:9244:-697.49,0,-457.631	0/1:64:56,8:56:1978:8:288:-7.00149,0,-158.847	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3771	0/1:110:50,60:50:1766:60:2142:-159.929,0,-125.81	0/1:111:79,32:79:2787:32:1133:-68.8523,0,-217.459	0/1:148:76,72:76:2709:72:2592:-188.888,0,-199.367	0/1:137:73,64:73:2612:64:2285:-164.657,0,-193.8	0/1:45:28,17:28:1008:17:612:-41.8662,0,-77.3676	0/1:198:94,104:94:3319:104:3698:-273.354,0,-239.1	0/1:115:65,50:65:2306:50:1796:-127.299,0,-173.014	0/1:56:36,20:36:1269:20:720:-48.2711,0,-97.5875	0/1:149:82,67:82:2929:67:2397:-171.127,0,-218.116	0/1:72:51,20:51:1824:20:720:-43.3966,0,-142.682	0/1:84:63,21:63:2208:21:752:-42.7197,0,-173.65	0/1:66:38,28:38:1326:28:1005:-70.8976,0,-99.6309	0/1:45:22,23:22:773:23:824:-60.9284,0,-56.2561	0/1:114:83,31:83:2931:31:1101:-65.0757,0,-229.56	0/1:223:155,68:155:5580:68:2403:-149.385,0,-434.752	0/1:200:95,105:95:3389:105:3750:-277.487,0,-244.791	0/1:87:59,28:59:2105:28:1004:-64.4863,0,-162.915	0/1:31:19,12:19:684:12:432:-29.8893,0,-52.473	0/1:61:41,20:41:1461:20:720:-46.7629,0,-113.395	0/1:376:142,234:142:5059:234:8358:-638.542,0,-341.609	0/1:302:120,182:120:4286:182:6494:-493.619,0,-293.162	0/1:87:35,52:35:1260:52:1872:-142.568,0,-86.2379	0/1:195:71,124:71:2533:124:4416:-338.896,0,-169.442	0/1:122:79,43:79:2776:43:1544:-102.526,0,-212.707	0/1:150:87,63:87:3094:63:2260:-158.508,0,-233.006	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2032	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79184	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	.:.:.:.:.:.:.:.	0/1:8:2,6:2:72:6:212:-17.0073,0,-4.42657	0/1:311:209,102:209:7473:102:3638:-233.99,0,-578.417	0/1:104:42,62:42:1512:62:2211:-167.942,0,-104.87	0/1:60:46,14:46:1656:14:504:-27.635,0,-131.155	.:.:.:.:.:.:.:.	0/1:108:53,55:53:1870:55:1958:-143.976,0,-135.919	0/1:51:23,28:23:828:28:993:-74.3284,0,-59.4494	0/1:61:46,15:46:1652:15:532:-29.8496,0,-130.505	0/1:124:89,35:89:3158:35:1260:-76.3731,0,-246.748	0/1:101:60,41:60:2141:41:1472:-102.371,0,-162.3	0/1:113:71,42:71:2514:42:1508:-101.998,0,-191.955	0/1:101:72,29:72:2543:29:1029:-62.5162,0,-198.47	0/1:218:85,133:85:3026:133:4765:-363.272,0,-206.58	0/1:74:33,41:33:1188:41:1461:-109.508,0,-84.8806	0/1:153:97,56:97:3469:56:2000:-134.175,0,-266.002	0/1:40:25,15:25:885:15:525:-35.5369,0,-67.861	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59568	0/1:91:35,56:35:1245:56:2004:-153.238,0,-84.9286	0/1:75:37,38:37:1302:38:1360:-100.123,0,-94.7577	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.142	0/1:144:104,40:104:3698:40:1425:-85.191,0,-289.278	0/1:20:9,11:9:320:11:396:-29.9621,0,-22.8316	0/1:10:2,8:2:72:8:284:-22.8921,0,-3.82451	0/1:12:7,5:7:252:5:180:-12.9369,0,-19.4124	0/1:59:41,18:41:1476:18:640:-40.1648,0,-115.343	0/1:174:84,90:84:3008:90:3217:-237.356,0,-216.644	.:.:.:.:.:.:.:.	0/1:531:219,312:219:7834:312:11152:-843.71,0,-544.546	0/1:217:79,138:79:2844:138:4930:-378.51,0,-190.463	0/1:97:47,50:47:1673:50:1773:-130.649,0,-121.431	0/1:78:33,45:33:1169:45:1601:-120.895,0,-81.7989	0/1:271:115,156:115:4094:156:5558:-418.574,0,-286.789	0/1:135:55,80:55:1961:80:2846:-215.726,0,-135.788	0/1:51:31,20:31:1112:20:720:-49.7762,0,-84.9273	0/1:46:26,20:26:906:20:705:-49.9029,0,-67.6833	0/1:74:32,42:32:1137:42:1497:-112.744,0,-80.1942	0/1:13:11,2:11:396:2:72:-2.92087,0,-32.0552	0/1:129:62,67:62:2209:67:2385:-176.07,0,-159.98	0/1:106:69,37:69:2438:37:1324:-87.5511,0,-186.751	0/1:127:62,65:62:2209:65:2321:-170.886,0,-160.807	0/1:171:104,67:104:3721:67:2397:-164.416,0,-282.663	0/1:109:57,52:57:2033:52:1864:-135.226,0,-150.132	0/1:138:69,69:69:2446:69:2479:-181.62,0,-178.364	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.3697	0/1:162:84,78:84:3024:78:2770:-200.767,0,-223.265	0/1:129:48,81:48:1713:81:2885:-220.971,0,-115.316	0/1:249:102,147:102:3645:147:5246:-397.26,0,-252.267	0/1:150:70,80:70:2490:80:2860:-212.467,0,-178.63	0/1:124:61,63:61:2173:63:2256:-165.967,0,-157.887	0/1:110:73,37:73:2605:37:1328:-86.7011,0,-201.499	0/1:296:140,155:140:4964:155:5546:-409.123,0,-356.376	0/1:39:27,12:27:968:12:432:-27.481,0,-75.6713	0/1:170:69,101:69:2480:101:3598:-272.845,0,-171.351	0/1:118:69,49:69:2461:49:1741:-121.443,0,-185.96	0/1:62:42,20:42:1493:20:711:-45.6467,0,-115.722	0/1:105:73,32:73:2594:32:1129:-70.3066,0,-201.202	0/1:127:90,37:90:3209:37:1330:-81.762,0,-250.546	0/1:329:165,164:165:5909:164:5879:-430.155,0,-428.894	0/1:249:118,131:118:4221:131:4708:-348.91,0,-304.408
chr06	7208392	.	G	T	21338.4	PASS	AB=0.319011;ABP=1578.99;AC=47;AF=0.25;AN=188;AO=1787;CIGAR=1X;DP=14603;DPB=14603;DPRA=0.786645;EPP=3883.43;EPPR=27828.3;GTI=9;LEN=1;MEANALT=1.0339;MQM=55.9558;MQMR=59.7155;NS=94;NUMALT=1;ODDS=0.201266;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63653;QR=442935;RO=12814;RPL=0;RPP=3883.43;RPPR=27828.3;RPR=1787;RUN=1;SAF=0;SAP=3883.43;SAR=1787;SRF=0;SRP=27828.3;SRR=12814;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:15,15:15:514:15:531:-39.0781,0,-37.5529	0/1:155:113,42:113:3904:42:1478:-86.5905,0,-304.893	0/1:228:154,74:154:5319:74:2640:-168.851,0,-410.03	0/0:443:441,2:441:15393:2:68:0,-126.932,-1378.47	0/1:32:24,8:24:839:8:288:-16.553,0,-66.1943	0/1:42:25,17:25:870:17:608:-42.3878,0,-65.9688	0/0:198:198,0:198:6919:0:0:0,-59.6039,-622.749	0/1:133:101,32:101:3526:32:1131:-62.0237,0,-277.457	0/1:89:63,26:63:2190:26:936:-57.6771,0,-170.569	0/1:177:113,64:113:3955:64:2269:-150.956,0,-302.86	0/1:88:68,20:68:2334:20:708:-37.4281,0,-183.823	0/0:163:163,0:163:5545:0:0:0,-49.0679,-499.192	0/1:120:87,33:87:2910:33:1180:-70.3561,0,-226.007	0/1:117:67,50:67:2298:50:1776:-124.765,0,-171.362	0/0:131:131,0:131:4479:0:0:0,-39.4349,-403.117	0/1:90:61,29:61:2111:29:1018:-64.7978,0,-163.163	0/1:99:80,19:80:2740:19:680:-31.7104,0,-217.041	0/0:83:83,0:83:2882:0:0:0,-24.9855,-259.612	0/0:59:59,0:59:2023:0:0:0,-17.7608,-182.335	0/1:282:205,77:205:7147:77:2752:-162.777,0,-558.382	0/1:217:159,58:159:5474:58:2063:-120.46,0,-426.768	0/0:134:134,0:134:4729:0:0:0,-40.338,-425.33	0/1:98:61,37:61:2114:37:1328:-89.4609,0,-161.021	0/1:52:36,16:36:1243:16:568:-35.7736,0,-96.5124	0/1:82:58,24:58:2029:24:855:-52.5496,0,-158.194	0/0:515:515,0:515:17747:0:0:0,-155.03,-1596.68	0/0:421:420,1:420:14442:1:36:0,-123.137,-1295.93	0/0:65:64,1:64:2184:1:36:0,-15.9704,-193.214	0/1:453:306,147:306:10668:147:5229:-333.207,0,-823.631	0/1:252:154,98:154:5340:98:3499:-238.49,0,-404.882	0/0:164:164,0:164:5696:0:0:0,-49.3689,-512.605	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978	0/0:17:17,0:17:577:0:0:0,-5.11751,-52.2172	0/1:10:6,3:6:201:3:108:-7.07068,0,-15.4285	0/1:6:4,2:4:140:2:72:-5.02863,0,-11.138	0/0:24:24,0:24:814:0:0:0,-7.22472,-73.5674	0/1:290:206,84:206:7037:84:2998:-182.384,0,-545.962	0/0:213:213,0:213:7368:0:0:0,-64.1194,-662.654	0/1:104:75,29:75:2560:29:1023:-61.0515,0,-199.341	0/1:4:3,1:3:108:1:36:-2.39244,0,-8.8631	0/0:222:222,0:222:7753:0:0:0,-66.8287,-697.805	0/0:67:67,0:67:2294:0:0:0,-20.169,-206.716	0/1:161:123,38:123:4226:38:1338:-72.1947,0,-331.923	0/1:74:48,26:48:1635:26:936:-62.1546,0,-125.154	0/1:71:46,25:46:1561:25:900:-59.8091,0,-119.397	0/1:94:60,34:60:2062:34:1224:-81.4256,0,-157.541	0/1:140:108,32:108:3697:32:1144:-61.027,0,-290.784	0/0:265:263,2:263:9015:2:72:0,-72.9403,-804.453	0/0:108:108,0:108:3736:0:0:0,-32.5112,-336.325	0/1:290:205,85:205:7138:85:3036:-185.971,0,-555.175	0/1:149:94,55:94:3224:55:1938:-129.258,0,-245.415	0/1:26:17,9:17:585:9:324:-21.6578,0,-45.1412	0/0:217:217,0:217:7631:0:0:0,-65.3235,-686.761	0/0:199:199,0:199:6869:0:0:0,-59.905,-618.204	0/1:16:12,4:12:408:4:144:-8.49342,0,-32.2276	0/1:245:164,80:164:5671:80:2860:-182.84,0,-435.837	0/0:31:30,1:30:1045:1:21:0,-7.23534,-92.2586	0/1:4:3,1:3:108:1:36:-2.39045,0,-8.87105	0/1:36:24,12:24:831:12:429:-27.9591,0,-64.2651	0/1:115:70,45:70:2444:45:1604:-109.937,0,-185.59	0/0:250:247,3:247:8413:3:99:0,-66.026,-747.85	0/1:9:6,3:6:212:3:93:-5.87487,0,-16.7155	0/0:491:491,0:491:17136:0:0:0,-147.806,-1541.62	0/0:315:313,2:313:10882:2:72:0,-87.9927,-972.36	0/0:177:177,0:177:6153:0:0:0,-53.2823,-553.758	0/0:132:132,0:132:4584:0:0:0,-39.736,-411.526	0/0:269:268,1:268:9318:1:36:0,-77.3814,-834.887	0/0:413:413,0:413:14320:0:0:0,-124.325,-1288.45	0/0:93:93,0:93:3203:0:0:0,-27.9958,-288.492	0/0:74:72,2:72:2473:2:72:0,-15.4414,-215.956	0/0:91:91,0:91:3159:0:0:0,-27.3937,-284.517	0/1:74:44,30:44:1523:30:1067:-73.9065,0,-115.08	0/0:171:171,0:171:5859:0:0:0,-51.4761,-527.402	0/1:150:103,47:103:3557:47:1679:-105.113,0,-275.185	0/1:238:155,83:155:5412:83:2955:-194.168,0,-415.517	0/0:408:408,0:408:14242:0:0:0,-122.82,-1280.68	0/0:106:106,0:106:3640:0:0:0,-31.9092,-327.721	0/0:225:222,3:222:7709:3:108:0,-57.7306,-683.858	0/1:21:9,12:9:315:12:432:-32.7827,0,-22.3656	0/0:151:150,1:150:5280:1:36:0,-41.859,-471.743	0/0:234:234,0:234:8040:0:0:0,-70.441,-723.631	0/0:306:306,0:306:10699:0:0:0,-92.1152,-962.778	0/0:127:127,0:127:4338:0:0:0,-38.2308,-390.587	0/0:167:167,0:167:5820:0:0:0,-50.272,-523.43	0/1:71:52,19:52:1735:19:676:-39.6728,0,-135.051	0/0:261:261,0:261:8925:0:0:0,-78.5688,-803.152	0/1:34:23,11:23:774:11:392:-25.3755,0,-59.734	0/0:117:117,0:117:3965:0:0:0,-35.2205,-357.044	0/0:140:140,0:140:4760:0:0:0,-42.1442,-428.57	0/0:112:112,0:112:3798:0:0:0,-33.7154,-342.015	0/1:178:119,59:119:4071:59:2120:-137.068,0,-312.96	0/1:93:41,52:41:1379:52:1860:-138.623,0,-96.3833	0/0:277:276,1:276:9455:1:36:0,-79.7896,-847.3	0/0:217:217,0:217:7457:0:0:0,-65.3235,-670.697
chr06	7208397	.	C	T	132731	PASS	AB=0.517943;ABP=44.5434;AC=93;AF=0.5;AN=186;AO=7693;CIGAR=1X;DP=14853;DPB=14853;DPRA=0;EPP=16708.1;EPPR=15542.1;GTI=0;LEN=1;MEANALT=1.04301;MQM=58.8218;MQMR=59.6938;NS=93;NUMALT=1;ODDS=112.066;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275312;QR=252667;RO=7156;RPL=0;RPP=16708.1;RPPR=15542.1;RPR=7693;RUN=1;SAF=0;SAP=16708.1;SAR=7693;SRF=0;SRP=15542.1;SRR=7156;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:9,22:9:307:22:788:-61.8998,0,-18.6283	0/1:156:35,121:35:1235:121:4327:-342.537,0,-64.4917	0/1:232:78,154:78:2779:154:5519:-426.218,0,-180.511	0/1:452:284,168:284:10045:168:6008:-404.563,0,-767.668	0/1:33:18,15:18:633:15:540:-38.9216,0,-47.3611	0/1:43:15,28:15:536:28:1004:-77.7101,0,-35.6305	0/1:204:95,109:95:3366:109:3919:-291.409,0,-241.714	0/1:132:75,57:75:2660:57:2048:-144.758,0,-199.905	0/1:89:34,55:34:1203:55:1964:-150.153,0,-81.7825	0/1:182:62,120:62:2203:120:4281:-330.407,0,-143.747	0/1:91:40,51:40:1398:51:1832:-137.578,0,-98.7104	0/1:175:94,81:94:3296:81:2877:-206.377,0,-244.179	0/1:123:45,77:45:1582:77:2763:-211.833,0,-105.621	0/1:117:39,78:39:1379:78:2792:-215.663,0,-89.185	0/1:134:78,56:78:2720:56:2004:-140.283,0,-204.543	0/1:94:34,60:34:1216:60:2120:-162.731,0,-81.4497	0/1:99:22,76:22:779:76:2672:-210.845,0,-40.5716	0/1:85:36,49:36:1248:49:1749:-132.104,0,-87.0295	0/1:64:40,24:40:1410:24:860:-58.4541,0,-107.927	0/1:289:82,207:82:2896:207:7395:-578.411,0,-173.861	0/1:223:97,126:97:3423:126:4513:-338.974,0,-240.356	0/1:135:78,57:78:2731:57:2028:-141.778,0,-205.385	0/1:99:35,64:35:1244:64:2304:-177.733,0,-82.4571	0/1:54:12,42:12:428:42:1508:-119.73,0,-22.5894	0/1:82:28,54:28:1000:54:1944:-150.507,0,-65.6309	0/1:522:295,227:295:10423:227:8146:-575.854,0,-780.789	0/1:425:257,168:257:9122:168:6016:-413.585,0,-692.887	0/1:67:30,37:30:1055:37:1317:-98.5879,0,-75.091	0/1:451:184,267:184:6512:267:9535:-720.967,0,-450.374	0/1:262:93,169:93:3286:169:6052:-464.44,0,-217.085	0/1:165:87,78:87:3053:78:2800:-202.562,0,-225.276	.:.:.:.:.:.:.:.	0/1:19:9,10:9:324:10:360:-27.0232,0,-23.7545	0/1:8:3,5:3:108:5:180:-14.141,0,-7.66599	0/1:6:3,3:3:104:3:108:-8.26711,0,-7.89625	0/1:25:7,18:7:252:18:643:-50.6743,0,-15.5014	0/1:292:116,176:116:4069:176:6310:-479.721,0,-278.453	0/1:214:138,76:138:4895:76:2718:-179.693,0,-376.247	0/1:106:41,65:41:1430:65:2327:-177.754,0,-97.0818	0/1:4:3,1:3:108:1:36:-2.39244,0,-8.8631	0/1:226:130,96:130:4638:96:3448:-242.424,0,-349.541	0/1:71:38,33:38:1324:33:1188:-85.8524,0,-98.0802	0/1:162:69,93:69:2461:93:3336:-251.625,0,-172.846	0/1:74:33,41:33:1146:41:1476:-110.731,0,-81.168	0/1:71:30,41:30:1037:41:1463:-110.459,0,-72.2589	0/1:96:27,69:27:963:69:2460:-192.096,0,-58.0804	0/1:141:52,89:52:1845:89:3171:-243.068,0,-123.875	0/1:267:150,117:150:5263:117:4188:-296.717,0,-393.373	0/1:110:54,56:54:1873:56:1991:-146.317,0,-135.693	0/1:295:111,184:111:3944:184:6592:-504.338,0,-266.336	0/1:144:47,97:47:1667:97:3476:-269.102,0,-106.957	0/1:26:12,14:12:428:14:496:-37.1254,0,-30.9956	0/1:223:116,107:116:4119:107:3827:-277.387,0,-303.682	0/1:202:105,97:105:3706:97:3488:-253.305,0,-272.855	0/1:16:9,7:9:305:7:252:-18.2088,0,-22.9607	0/1:252:91,161:91:3223:161:5768:-442.842,0,-213.847	0/1:31:23,8:23:786:8:288:-16.9331,0,-61.7198	0/1:4:1,3:1:36:3:108:-8.86759,0,-2.39415	0/1:37:16,21:16:576:21:752:-56.7036,0,-41.0302	0/1:115:49,66:49:1739:66:2376:-179.338,0,-122.172	0/1:257:137,120:137:4818:120:4304:-310.045,0,-356.391	0/1:9:1,8:1:36:8:288:-23.4398,0,-0.889005	0/1:497:278,219:278:9858:219:7828:-554.779,0,-737.47	0/1:323:161,162:161:5737:162:5816:-426.205,0,-419.209	0/1:182:117,65:117:4158:65:2322:-154.315,0,-319.526	0/1:133:69,64:69:2416:64:2280:-164.561,0,-177.643	0/1:272:165,106:165:5858:106:3811:-261.353,0,-445.496	0/1:425:239,185:239:8502:185:6607:-466.699,0,-637.06	0/1:99:51,48:51:1804:48:1713:-124.651,0,-132.837	0/1:79:43,36:43:1527:36:1288:-92.4153,0,-113.912	0/1:95:47,48:47:1646:48:1712:-125.747,0,-119.819	0/1:74:22,52:22:775:52:1862:-145.362,0,-47.795	0/1:172:97,75:97:3439:75:2671:-188.855,0,-257.5	0/1:155:61,94:61:2164:94:3371:-255.618,0,-148.357	0/1:238:75,163:75:2654:163:5835:-453.225,0,-167.366	0/1:410:246,164:246:8719:164:5888:-406.499,0,-660.452	0/1:111:66,45:66:2341:45:1599:-110.783,0,-177.516	0/1:226:111,115:111:3975:115:4118:-302.697,0,-289.906	0/1:21:8,13:8:288:13:468:-36.0212,0,-19.9458	0/1:153:65,88:65:2315:88:3164:-238.921,0,-162.551	0/1:237:130,107:130:4612:107:3848:-275.157,0,-343.896	0/1:318:180,138:180:6339:138:4938:-348.808,0,-474.843	0/1:127:73,54:73:2544:54:1935:-136.179,0,-190.964	0/1:171:88,83:88:3071:83:2962:-215.247,0,-225.137	0/1:72:26,46:26:899:46:1652:-127.164,0,-59.5456	0/1:264:141,123:141:4885:123:4376:-314.516,0,-360.31	0/1:34:8,26:8:279:26:936:-74.3144,0,-15.2125	0/1:120:57,63:57:1964:63:2260:-167.534,0,-140.904	0/1:140:75,65:75:2600:65:2328:-167.629,0,-192.102	0/1:109:62,47:62:2162:47:1678:-118.49,0,-162.027	0/1:189:67,122:67:2321:122:4362:-335.278,0,-152.244	0/1:92:20,72:20:720:72:2567:-202.523,0,-37.434	0/1:280:151,129:151:5314:129:4614:-331.125,0,-394.0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chr06	7208424	.	C	A	122298	PASS	AB=0.485974;ABP=28.3499;AC=95;AF=0.505319;AN=188;AO=7208;CIGAR=1X;DP=14831;DPB=14831;DPRA=0;EPP=15576.9;EPPR=16372;GTI=1;LEN=1;MEANALT=1.09574;MQM=59.6747;MQMR=58.8306;NS=94;NUMALT=1;ODDS=115.548;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257977;QR=271894;RO=7614;RPL=7199;RPP=15576.9;RPPR=16372;RPR=9;RUN=1;SAF=0;SAP=15655;SAR=7208;SRF=0;SRP=16536.6;SRR=7614;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:22,9:22:769:9:320:-19.8104,0,-60.185	0/1:158:121,37:121:4332:37:1328:-72.2575,0,-342.424	0/1:237:157,80:157:5598:80:2849:-185.283,0,-432.172	0/1:441:163,278:163:5813:278:9956:-763.031,0,-390.409	0/1:33:15,18:15:536:18:644:-48.3389,0,-38.5615	0/1:44:29,15:29:1036:15:540:-35.6912,0,-80.2914	0/1:202:110,92:110:3927:92:3304:-236.709,0,-292.731	0/1:133:55,77:55:1931:77:2742:-206.957,0,-133.975	0/1:91:56,35:56:2004:35:1256:-85.9506,0,-153.15	0/1:181:119,62:119:4234:62:2213:-144.947,0,-326.503	0/1:86:49,37:49:1722:37:1328:-93.929,0,-129.189	0/1:170:80,90:80:2864:90:3236:-240.282,0,-206.711	0/1:123:77,46:77:2752:46:1648:-111.58,0,-210.865	0/1:118:80,38:80:2833:38:1355:-86.7257,0,-219.467	0/1:133:57,75:57:2048:75:2696:-202.779,0,-144.482	0/1:92:58,34:58:2073:34:1220:-82.412,0,-159.099	0/1:100:78,22:78:2804:22:792:-41.5027,0,-222.451	0/1:83:48,35:48:1716:35:1256:-88.358,0,-129.737	0/1:64:24,40:24:864:40:1440:-110.63,0,-58.8148	0/1:293:207,86:207:7413:86:3069:-188.21,0,-578.784	0/1:216:121,94:121:4322:94:3364:-237.832,0,-323.918	0/1:137:56,80:56:1974:80:2855:-215.814,0,-136.61	0/1:101:65,36:65:2302:36:1292:-86.1727,0,-176.95	0/1:52:40,12:40:1432:12:432:-23.5538,0,-113.498	0/1:85:56,29:56:2012:29:1044:-68.5574,0,-155.722	0/1:522:223,299:223:7958:299:10702:-805.731,0,-559.011	0/1:424:168,256:168:5968:256:9147:-695.457,0,-409.513	0/1:66:37,29:37:1328:29:1044:-74.4068,0,-99.8799	0/1:454:267,187:267:9531:187:6700:-466.379,0,-719.75	0/1:263:171,92:171:6104:92:3304:-218.402,0,-468.825	0/1:162:75,87:75:2661:87:3079:-228.449,0,-190.964	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:18:11,7:11:388:7:252:-17.6073,0,-29.8373	0/1:10:5,5:5:180:5:180:-13.5408,0,-13.539	0/1:6:3,3:3:108:3:108:-8.26805,0,-8.26711	0/1:25:18,7:18:640:7:252:-15.5014,0,-50.4032	0/1:289:171,118:171:6132:118:4232:-294.014,0,-464.618	0/1:217:76,141:76:2717:141:5018:-386.345,0,-178.708	0/1:108:66,42:66:2346:42:1504:-103.135,0,-178.86	0/1:4:1,3:1:36:3:108:-8.8631,0,-2.39244	0/1:227:97,130:97:3465:130:4668:-351.937,0,-243.653	0/1:70:32,38:32:1140:38:1359:-101.535,0,-81.8356	0/1:165:92,73:92:3296:73:2609:-185.251,0,-247.125	0/1:73:39,34:39:1400:34:1220:-88.1307,0,-104.198	0/1:73:42,31:42:1512:31:1108:-78.0525,0,-114.261	0/1:95:67,28:67:2387:28:1008:-62.4285,0,-185.746	0/1:135:87,48:87:3124:48:1712:-113.723,0,-240.649	0/1:261:113,148:113:4056:148:5285:-397.148,0,-286.561	0/1:114:58,56:58:2065:56:1980:-144.144,0,-151.767	0/1:298:186,112:186:6621:112:4009:-271.281,0,-506.049	0/1:147:94,53:94:3360:53:1889:-125.916,0,-257.793	0/1:26:14,12:14:504:12:424:-30.6332,0,-37.8478	0/1:221:106,115:106:3800:115:4120:-304.369,0,-275.04	0/1:202:96,106:96:3440:106:3808:-282.025,0,-248.992	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2088	0/1:254:163,91:163:5809:91:3253:-216.433,0,-445.143	0/1:31:8,23:8:288:23:820:-64.7906,0,-16.9331	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.86759	0/1:37:21,16:21:756:16:557:-39.3147,0,-57.0625	0/1:116:66,50:66:2342:50:1796:-126.997,0,-175.981	0/1:250:115,135:115:4120:135:4832:-359.734,0,-295.607	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.5022	0/1:496:216,280:216:7668:280:10024:-752.737,0,-540.5	0/1:320:157,162:157:5620:162:5807:-426.346,0,-409.423	0/1:178:64,114:64:2274:114:4096:-315.123,0,-151.328	0/1:131:62,69:62:2197:69:2472:-183.283,0,-157.368	0/1:277:106,170:106:3793:170:6103:-465.928,0,-258.236	0/1:424:181,243:181:6483:243:8697:-654.782,0,-455.893	0/1:99:48,51:48:1720:51:1828:-134.999,0,-125.28	0/1:81:37,44:37:1302:44:1575:-117.628,0,-93.0669	0/1:95:48,47:48:1720:47:1688:-123.554,0,-126.469	0/1:75:52,23:52:1856:23:824:-51.9051,0,-144.56	0/1:172:75,97:75:2658:97:3463:-259.523,0,-187.683	0/1:151:92,59:92:3288:59:2108:-144.526,0,-249.243	0/1:238:159,79:159:5685:79:2807:-181.202,0,-439.808	0/1:417:161,256:161:5780:256:9189:-700.59,0,-394.677	0/1:111:43,68:43:1514:68:2436:-185.766,0,-103.133	0/1:229:115,114:115:4119:114:4087:-299.078,0,-301.942	0/1:23:15,8:15:540:8:288:-19.3437,0,-41.8962	0/1:153:88,65:88:3160:65:2319:-162.911,0,-238.562	0/1:239:109,129:109:3870:129:4606:-342.692,0,-276.457	0/1:318:134,184:134:4797:184:6555:-494.258,0,-336.122	0/1:130:54,75:54:1940:75:2688:-202.995,0,-135.706	0/1:172:85,87:85:3048:87:3132:-230.316,0,-222.679	0/1:73:45,28:45:1607:28:1000:-68.3331,0,-122.818	0/1:258:116,141:116:4118:141:5052:-376.996,0,-293.067	0/1:36:27,9:27:968:9:320:-18.3053,0,-76.5903	0/1:116:59,57:59:2109:57:2036:-148.592,0,-155.153	0/1:140:63,77:63:2260:77:2764:-206.855,0,-161.514	0/1:112:47,65:47:1688:65:2323:-175.606,0,-118.485	0/1:187:119,68:119:4252:68:2440:-163.548,0,-326.115	0/1:91:69,22:69:2471:22:781:-43.1721,0,-194.19	0/1:276:126,150:126:4512:150:53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chr06	7211722	.	C	T	24483	PASS	AB=0.387178;ABP=484.169;AC=47;AF=0.25;AN=188;AO=1695;CIGAR=1X;DP=11015;DPB=11015;DPRA=0.741805;EPP=3683.66;EPPR=20228.1;GTI=8;LEN=1;MEANALT=1.07547;MQM=59.9563;MQMR=59.9952;NS=94;NUMALT=1;ODDS=1.53815;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60491;QR=332268;RO=9314;RPL=1695;RPP=3683.66;RPPR=20228.1;RPR=0;RUN=1;SAF=0;SAP=3683.66;SAR=1695;SRF=0;SRP=20228.1;SRR=9314;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:10,19:10:360:19:684:-53.1605,0,-24.0144	0/1:154:100,54:100:3562:54:1917:-126.447,0,-274.427	0/1:116:77,39:77:2737:39:1389:-90.3875,0,-211.652	0/0:234:234,0:234:8347:0:0:0,-70.441,-751.235	0/1:31:12,19:12:428:19:684:-52.5584,0,-29.5269	0/1:56:32,24:32:1133:24:860:-60.8642,0,-85.419	0/0:118:118,0:118:4225:0:0:0,-35.5215,-380.428	0/1:181:84,97:84:3005:97:3461:-257.215,0,-216.193	0/1:81:49,32:49:1730:32:1148:-79.2464,0,-131.597	0/1:123:56,67:56:2012:67:2389:-178.239,0,-144.326	0/1:86:54,32:54:1906:32:1152:-78.1016,0,-145.925	0/0:106:105,0:105:3753:0:0:0,-31.6081,-337.757	0/1:114:81,33:81:2900:33:1177:-71.9193,0,-226.918	0/1:95:59,36:59:2105:36:1284:-87.265,0,-161.12	0/0:146:146,0:146:5191:0:0:0,-43.9504,-467.328	0/1:67:45,22:45:1601:22:762:-48.7268,0,-124.209	0/1:135:98,36:98:3505:36:1296:-76.3919,0,-275.109	0/0:142:142,0:142:5058:0:0:0,-42.7463,-455.364	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:197:148,49:148:5267:49:1725:-96.2279,0,-414.861	0/1:124:75,49:75:2685:49:1760:-121.356,0,-204.565	0/0:68:68,0:68:2433:0:0:0,-20.47,-219.224	0/1:72:40,32:40:1421:32:1129:-80.2422,0,-106.511	0/1:106:54,52:54:1906:52:1853:-135.134,0,-139.905	0/1:52:36,16:36:1296:16:576:-36.5214,0,-101.29	0/0:431:430,1:430:15267:1:36:0,-126.146,-1370.15	0/0:191:191,0:191:6845:0:0:0,-57.4967,-616.117	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:169:106,63:106:3797:63:2238:-150.807,0,-291.052	0/1:150:98,52:98:3516:52:1853:-121.893,0,-271.495	0/0:166:166,0:166:5903:0:0:0,-49.971,-531.379	0/1:12:5,7:5:180:7:237:-18.0467,0,-12.9397	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/1:3:1,2:1:36:2:57:-4.51022,0,-2.69518	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:324:216,108:216:7718:108:3869:-250.869,0,-597.118	0/0:192:192,0:192:6842:0:0:0,-57.7978,-615.848	0/1:122:89,33:89:3181:33:1188:-70.4671,0,-249.787	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:184:183,0:183:6542:0:0:0,-55.0885,-588.651	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.747	0/1:87:38,49:38:1368:49:1711:-128.08,0,-97.2312	0/1:114:68,46:68:2425:46:1622:-111.948,0,-184.187	0/1:109:66,43:66:2372:43:1536:-105.72,0,-180.914	0/1:126:57,69:57:2029:69:2480:-185.523,0,-144.951	0/1:71:36,35:36:1266:35:1237:-90.2592,0,-92.8655	0/0:171:171,0:171:6091:0:0:0,-51.4761,-548.29	0/0:138:138,0:138:4930:0:0:0,-41.5421,-443.848	0/1:140:81,59:81:2897:59:2105:-147.573,0,-218.82	0/1:131:71,60:71:2556:60:2148:-154.153,0,-190.855	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:108:108,0:108:3857:0:0:0,-32.5112,-347.325	0/0:71:71,0:71:2518:0:0:0,-21.3731,-226.869	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:89:46,43:46:1614:43:1548:-112.821,0,-118.753	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:14:7,7:7:237:7:252:-18.7577,0,-17.4446	0/1:86:57,29:57:2048:29:1044:-68.3862,0,-158.703	0/0:246:246,0:246:8787:0:0:0,-74.0534,-790.815	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:266:266,0:266:9480:0:0:0,-80.074,-853.158	0/0:190:188,2:188:6711:2:72:0,-50.359,-597.226	0/0:139:139,0:139:4977:0:0:0,-41.8432,-447.707	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:116:112,2:112:3998:2:72:0,-27.8031,-353.206	0/0:136:135,1:135:4799:1:36:0,-37.3418,-428.466	0/0:34:34,0:34:1194:0:0:0,-10.235,-107.761	0/0:62:62,0:62:2217:0:0:0,-18.6639,-199.793	0/0:231:231,0:231:8270:0:0:0,-69.5379,-744.306	0/1:32:25,7:25:888:7:252:-13.396,0,-70.6061	0/0:125:125,0:125:4443:0:0:0,-37.6287,-400.039	0/1:103:68,35:68:2425:35:1256:-81.2334,0,-187.498	0/1:152:96,56:96:3395:56:2004:-134.877,0,-260.006	0/0:229:229,0:229:8172:0:0:0,-68.9359,-735.49	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:227:227,0:227:8077:0:0:0,-68.3338,-726.945	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/0:155:152,3:152:5434:3:108:0,-36.5845,-479.111	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:200:200,0:200:7064:0:0:0,-60.206,-635.818	0/0:224:224,0:224:8025:0:0:0,-67.4307,-722.267	0/0:136:136,0:136:4858:0:0:0,-40.9401,-437.371	0/1:163:118,44:118:4218:44:1580:-93.3649,0,-330.67	0/0:304:304,0:304:10878:0:0:0,-91.5131,-978.917	0/1:65:40,25:40:1432:25:900:-61.7541,0,-109.611	0/0:171:171,0:171:6072:0:0:0,-51.4761,-546.581	0/0:116:116,0:116:4123:0:0:0,-34.9195,-371.252	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:135:81,54:81:2897:54:1940:-134.237,0,-220.325	0/1:84:49,35:49:1745:35:1252:-87.6986,0,-132.046	0/0:177:177,0:177:6284:0:0:0,-53.2823,-565.653	0/0:194:194,0:194:6942:0:0:0,-58.3998,-624.842
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chr06	7272931	.	G	A	10446.6	PASS	AB=0.270044;ABP=1870.55;AC=43;AF=0.228723;AN=188;AO=1112;CIGAR=1X;DP=13271;DPB=13271;DPRA=0.826533;EPP=2417.69;EPPR=26386.4;GTI=14;LEN=1;MEANALT=1.07692;MQM=46.7176;MQMR=47.0555;NS=94;NUMALT=1;ODDS=4.00988;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39691;QR=429363;RO=12154;RPL=9;RPP=2340.15;RPPR=3.35619;RPR=1103;RUN=1;SAF=9;SAP=2340.15;SAR=1103;SRF=6098;SRP=3.32546;SRR=6056;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:32,13:32:1130:13:468:-28.3012,0,-80.088	0/0:81:81,0:81:2847:0:0:0,-24.3834,-237.893	0/1:163:126,37:126:4469:37:1328:-68.4053,0,-319.084	0/0:444:443,0:443:15719:0:0:0,-133.356,-1341.22	0/1:62:56,6:56:1995:6:216:-0.60602,0,-149.319	0/1:22:14,8:14:486:8:288:-19.2815,0,-33.4989	0/0:150:150,0:150:5315:0:0:0,-45.1545,-462.879	0/1:132:90,42:90:3194:42:1499:-92.7558,0,-223.948	0/1:97:78,19:78:2739:19:679:-31.2156,0,-197.975	0/1:121:93,28:93:3310:28:1004:-53.624,0,-246.642	0/1:88:67,21:67:2376:21:747:-40.4171,0,-177.114	0/0:238:238,0:238:8300:0:0:0,-71.6451,-691.422	0/1:121:96,25:96:3413:25:887:-42.2178,0,-247.447	0/1:108:84,24:84:2942:24:864:-44.2029,0,-217.789	0/0:158:158,0:158:5542:0:0:0,-47.5627,-475.728	0/1:72:54,17:54:1907:17:612:-32.8342,0,-140.631	0/0:88:88,0:88:3110:0:0:0,-26.4906,-258.331	0/0:82:82,0:82:2838:0:0:0,-24.6845,-234.421	0/0:54:54,0:54:1898:0:0:0,-16.2556,-156.277	0/0:388:386,2:386:13734:2:72:0,-109.963,-1174.41	0/1:140:100,39:100:3528:39:1391:-81.1569,0,-259.409	0/0:157:157,0:157:5558:0:0:0,-47.2617,-480.226	0/1:99:70,29:70:2500:29:1036:-62.5615,0,-188.816	0/1:71:60,11:60:2092:11:387:-12.7154,0,-157.256	0/1:88:61,27:61:2155:27:949:-57.9233,0,-159.775	0/0:371:370,1:370:13071:1:36:0,-108.103,-1116.66	0/0:383:383,0:383:13518:0:0:0,-115.294,-1151.33	0/0:65:65,0:65:2282:0:0:0,-19.5669,-192.99	0/1:364:285,79:285:10113:79:2821:-142.693,0,-770.153	0/1:143:96,47:96:3357:47:1692:-107.827,0,-240.83	0/0:197:197,0:197:6938:0:0:0,-59.3029,-603.277	0/1:6:3,3:3:104:3:108:-7.82699,0,-7.00943	0/0:10:10,0:10:351:0:0:0,-3.0103,-30.3108	0/1:8:7,1:7:239:1:36:-1.14028,0,-17.9431	0/1:4:3,1:3:108:1:36:-2.3444,0,-6.96971	0/0:10:10,0:10:360:0:0:0,-3.0103,-31.2989	0/1:266:182,84:182:6433:84:3012:-187.556,0,-477.395	0/0:125:125,0:125:4426:0:0:0,-37.6287,-375.269	0/0:70:70,0:70:2462:0:0:0,-21.0721,-204.355	0/1:3:2,1:2:72:1:36:-2.66372,0,-5.1534	0/0:294:294,0:294:10411:0:0:0,-88.5028,-881.182	0/0:50:50,0:50:1760:0:0:0,-15.0515,-147.553	0/1:204:134,70:134:4735:70:2478:-159.579,0,-342.679	0/1:99:77,22:77:2698:22:788:-40.4352,0,-201.705	0/1:86:64,22:64:2235:22:788:-44.9785,0,-165.577	0/1:123:100,23:100:3576:23:824:-36.8084,0,-269.73	0/1:113:83,30:83:2948:30:1063:-60.6721,0,-202.395	0/0:286:286,0:286:10098:0:0:0,-86.0946,-866.6	0/0:139:139,0:139:4925:0:0:0,-41.8432,-424.061	0/1:151:90,61:90:3220:61:2156:-145.785,0,-233.868	0/1:129:89,40:89:3165:40:1436:-89.7541,0,-232.097	0/1:20:15,5:15:536:5:180:-10.4417,0,-39.1364	0/0:168:168,0:168:6008:0:0:0,-50.573,-495.91	0/0:139:139,0:139:4971:0:0:0,-41.8432,-421.623	0/1:5:2,3:2:72:3:108:-8.43069,0,-4.29847	0/1:154:108,46:108:3768:46:1635:-99.2405,0,-269.812	0/0:72:72,0:72:2559:0:0:0,-21.6742,-224.314	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.23727	0/1:7:4,3:4:129:3:108:-7.91334,0,-9.80809	0/1:89:70,19:70:2450:19:684:-33.7111,0,-182.45	0/0:172:172,0:172:6040:0:0:0,-51.7772,-517.283	0/1:4:2,2:2:72:2:72:-5.59554,0,-4.9582	0/0:312:311,1:311:11082:1:36:0,-91.5478,-945.77	0/0:311:309,2:309:10975:2:72:0,-86.8207,-928.952	0/0:140:140,0:140:4953:0:0:0,-42.1442,-417.257	0/0:129:129,0:129:4582:0:0:0,-38.8329,-390.132	0/0:285:283,2:283:9995:2:72:0,-80.0502,-858.82	0/0:246:246,0:246:8693:0:0:0,-74.0534,-740.426	0/0:92:92,0:92:3221:0:0:0,-27.6948,-272.324	0/0:96:96,0:96:3402:0:0:0,-28.8989,-281.212	0/0:93:93,0:93:3269:0:0:0,-27.9958,-281.126	0/1:16:12,4:12:432:4:144:-8.15514,0,-31.9411	0/0:171:171,0:171:6046:0:0:0,-51.4761,-507.979	0/1:98:66,32:66:2347:32:1148:-72.4848,0,-165.142	0/1:216:162,53:162:5742:53:1886:-102.328,0,-422.75	0/0:280:280,0:280:9884:0:0:0,-84.2884,-844.705	0/0:197:197,0:197:6949:0:0:0,-59.3029,-553.161	0/0:194:194,0:194:6832:0:0:0,-58.3998,-554.259	0/1:13:7,6:7:252:6:216:-15.6034,0,-19.1156	0/0:206:203,2:203:7208:2:72:0,-55.293,-598.561	0/0:290:290,0:290:10215:0:0:0,-87.2987,-846.571	0/0:374:373,1:373:13187:1:36:0,-108.987,-1118.56	0/0:114:114,0:114:4007:0:0:0,-34.3174,-343.144	0/0:150:149,1:149:5247:1:36:0,-42.6876,-446.58	0/1:60:44,16:44:1553:16:572:-33.4793,0,-116.377	0/0:249:247,2:247:8635:2:72:0,-68.1568,-729.112	0/1:32:25,7:25:845:7:252:-12.6259,0,-61.3948	0/0:119:119,0:119:4163:0:0:0,-35.8226,-346.972	0/0:147:147,0:147:5189:0:0:0,-44.2514,-430.868	0/0:91:91,0:91:3210:0:0:0,-27.3937,-269.461	0/1:134:95,39:95:3345:39:1382:-82.9393,0,-239.053	0/1:90:57,33:57:1991:33:1171:-77.8064,0,-143.233	0/0:269:269,0:269:9470:0:0:0,-80.9771,-813.894	0/0:256:256,0:256:9027:0:0:0,-77.0637,-779.239
chr06	7272968	.	A	C	108585	PASS	AB=0.572749;ABP=117.383;AC=144;AF=0.765957;AN=188;AO=6055;CIGAR=1X;DP=7135;DPB=7135;DPRA=15.3333;EPP=13151.3;EPPR=2335.17;GTI=7;LEN=1;MEANALT=1.05376;MQM=34.054;MQMR=46.6937;NS=94;NUMALT=1;ODDS=0.162945;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215639;QR=38445;RO=1074;RPL=6055;RPP=13151.3;RPPR=2335.17;RPR=0;RUN=1;SAF=0;SAP=13151.3;SAR=6055;SRF=0;SRP=2335.17;SRR=1074;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:12,18:12:428:18:644:-40.4799,0,-29.2871	1/1:40:0,40:0:0:40:1386:-106.026,-12.0412,0	0/1:106:36,70:36:1288:70:2497:-158.845,0,-82.1306	1/1:244:0,244:0:0:244:8685:-707.439,-73.4513,0	0/1:31:5,26:5:176:26:886:-60.8188,0,-6.54259	0/1:15:7,8:7:252:8:288:-17.7827,0,-18.195	1/1:57:0,57:0:0:57:2033:-167.079,-17.1587,0	0/1:89:43,46:43:1548:46:1648:-99.3517,0,-109.974	0/1:58:17,41:17:612:41:1450:-91.9968,0,-36.7399	0/1:71:24,47:24:856:47:1680:-115.205,0,-55.5068	0/1:55:20,34:20:699:34:1211:-82.2834,0,-46.3177	1/1:113:0,113:0:0:113:4037:-305.681,-34.0164,0	0/1:71:25,46:25:892:46:1635:-101.568,0,-57.7083	0/1:62:24,38:24:864:38:1364:-89.6709,0,-58.0503	1/1:74:0,74:0:0:74:2656:-215.839,-22.2762,0	0/1:45:17,28:17:608:28:1008:-66.86,0,-40.7423	1/1:42:0,42:0:0:42:1493:-113.664,-12.6433,0	1/1:43:0,43:0:0:43:1544:-116.787,-12.9443,0	1/1:32:0,32:0:0:32:1152:-87.402,-9.63296,0	1/1:183:0,183:0:0:183:6516:-531.685,-55.0885,0	0/1:82:39,43:39:1396:43:1544:-96.0632,0,-98.9505	1/1:69:0,69:0:0:69:2446:-199.412,-20.7711,0	0/1:48:25,23:25:892:23:820:-53.2958,0,-64.985	0/1:37:10,27:10:356:27:971:-65.6936,0,-20.3255	0/1:48:25,23:25:900:23:794:-48.8164,0,-65.6974	1/1:204:1,202:1:36:202:7139:-582.907,-57.8279,0	1/1:169:0,169:0:0:169:6007:-474.705,-50.8741,0	1/1:25:0,25:0:0:25:900:-69.1444,-7.52575,0	0/1:177:75,102:75:2696:102:3619:-243.112,0,-187.901	0/1:100:48,52:48:1706:52:1860:-117.716,0,-122.05	1/1:70:0,68:0:0:68:2395:-195.166,-20.47,0	0/1:4:3,1:3:108:1:36:-1.07475,0,-8.42905	1/1:4:0,4:0:0:4:135:-11.233,-1.20412,0	0/1:4:1,3:1:36:3:108:-7.34859,0,-2.3444	0/1:4:1,3:1:36:3:104:-6.82464,0,-2.3444	1/1:1:0,1:0:0:1:36:-2.55871,-0.30103,0	0/1:158:82,76:82:2925:76:2713:-175.124,0,-212.533	1/1:63:0,63:0:0:63:2237:-177.442,-18.9649,0	1/1:31:0,31:0:0:31:1093:-82.264,-9.33193,0	0/1:3:1,2:1:36:2:72:-5.1534,0,-2.66372	1/1:140:0,140:0:0:140:5020:-395.217,-42.1442,0	1/1:22:0,22:0:0:22:758:-59.2593,-6.62266,0	0/1:130:67,63:67:2396:63:2241:-139.237,0,-174.366	0/1:59:21,38:21:756:38:1364:-93.1506,0,-49.7296	0/1:56:22,34:22:792:34:1216:-82.3776,0,-54.3598	0/1:70:20,50:20:720:50:1787:-124.728,0,-43.4504	0/1:89:31,58:31:1112:58:2070:-130.349,0,-72.1831	1/1:149:0,149:0:0:149:5302:-435.438,-44.8535,0	1/1:64:0,64:0:0:64:2300:-187.381,-19.2659,0	0/1:101:61,40:61:2178:40:1436:-88.3696,0,-162.889	0/1:83:39,44:39:1400:44:1545:-100.923,0,-100.385	0/1:17:5,12:5:176:12:432:-30.4077,0,-10.9885	1/1:86:0,86:0:0:86:3042:-231.102,-25.8886,0	1/1:73:0,73:0:0:73:2602:-211.148,-21.9752,0	0/1:5:3,2:3:108:2:72:-4.29847,0,-8.43069	0/1:110:46,64:46:1644:64:2273:-146.757,0,-112.991	1/1:24:0,24:0:0:24:807:-67.5588,-7.22472,0	1/1:3:0,3:0:0:3:108:-9.23727,-0.90309,0	0/1:5:4,1:4:144:1:36:-1.79387,0,-11.7363	0/1:50:19,31:19:684:31:1112:-71.7449,0,-45.4512	1/1:89:0,89:0:0:89:3200:-261.059,-26.7917,0	0/1:5:2,3:2:72:3:108:-7.62815,0,-5.29451	1/1:166:0,166:0:0:166:5911:-482.135,-49.971,0	1/1:187:2,185:2:72:185:6644:-536.473,-49.493,0	1/1:77:0,77:0:0:77:2760:-219.057,-23.1793,0	1/1:82:0,82:0:0:82:2927:-240.8,-24.6845,0	1/1:128:1,127:1:36:127:4471:-362.868,-34.9531,0	1/1:144:0,144:0:0:144:5144:-419.81,-43.3483,0	1/1:42:0,42:0:0:42:1478:-115.055,-12.6433,0	1/1:43:0,43:0:0:43:1521:-111.69,-12.9443,0	1/1:40:0,40:0:0:40:1410:-114.108,-12.0412,0	0/1:12:4,8:4:144:8:288:-20.1801,0,-9.35926	1/1:69:0,69:0:0:69:2476:-184.79,-20.7711,0	0/1:64:32,32:32:1148:32:1148:-66.8473,0,-82.7198	0/1:130:52,78:52:1849:78:2792:-182.331,0,-125.205	1/1:146:0,146:0:0:146:5198:-422.455,-43.9504,0	1/1:134:0,134:0:0:134:4809:-358.395,-40.338,0	1/1:121:0,121:0:0:121:4298:-325.331,-36.4246,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.3232	1/1:120:2,118:2:72:118:4213:-329.315,-29.3467,0	1/1:139:0,139:0:0:139:4928:-370.181,-41.8432,0	1/1:214:0,213:0:0:213:7553:-613.459,-64.1194,0	1/1:57:0,57:0:0:57:2029:-165.635,-17.1587,0	1/1:77:0,77:0:0:77:2755:-223.608,-23.1793,0	0/1:37:16,21:16:576:21:752:-50.9799,0,-40.754	1/1:125:2,123:2:72:123:4377:-347.264,-30.8291,0	0/1:18:8,10:8:288:10:356:-21.0658,0,-19.759	1/1:56:0,56:0:0:56:1997:-151.378,-16.8577,0	1/1:74:0,74:0:0:74:2633:-200.125,-22.2762,0	1/1:45:0,45:0:0:45:1616:-126.663,-13.5464,0	0/1:90:38,51:38:1368:51:1828:-114.894,0,-94.8715	0/1:59:31,28:31:1112:28:1000:-64.5108,0,-81.8422	1/1:126:0,126:0:0:126:4490:-366.048,-37.9298,0	1/1:116:0,116:0:0:116:4164:-341.936,-34.9195,0
chr06	7293265	.	T	A	209858	PASS	AB=0.501376;ABP=3.10595;AC=139;AF=0.739362;AN=188;AO=9913;CIGAR=1X;DP=12848;DPB=12848;DPRA=69.0645;EPP=21528.8;EPPR=6363.25;GTI=4;LEN=1;MEANALT=1.05376;MQM=59.9832;MQMR=59.998;NS=94;NUMALT=1;ODDS=1.73462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=353656;QR=104886;RO=2929;RPL=0;RPP=21528.8;RPPR=6363.25;RPR=9913;RUN=1;SAF=9913;SAP=21528.8;SAR=0;SRF=2929;SRP=6363.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:89:37,52:37:1332:52:1868:-141.608,0,-93.3907	0/1:108:44,64:44:1576:64:2273:-172.32,0,-109.62	0/1:174:81,93:81:2895:93:3295:-244.387,0,-208.406	1/1:362:0,362:0:0:362:12935:-1163.96,-108.973,0	0/1:151:70,81:70:2516:81:2904:-216.14,0,-181.236	0/1:63:23,39:23:828:39:1392:-106.555,0,-55.8204	1/1:171:0,171:0:0:171:6068:-546.221,-51.4761,0	0/1:191:99,92:99:3518:92:3289:-238.732,0,-259.334	0/1:171:83,88:83:2984:88:3137:-231.079,0,-217.315	0/1:116:59,57:59:2108:57:2044:-149.312,0,-155.07	0/1:41:15,26:15:532:26:936:-72.2172,0,-35.8709	1/1:96:1,95:1:36:95:3416:-304.055,-25.3006,0	0/1:75:38,37:38:1368:37:1324:-96.8848,0,-100.844	0/1:52:21,31:21:734:31:1112:-84.7378,0,-50.7269	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:54:24,30:24:864:30:1080:-81.2576,0,-61.8269	0/1:32:19,13:19:680:13:468:-32.8267,0,-51.8962	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:936:531,405:531:19006:405:14341:-1008.68,0,-1428.33	0/1:236:120,116:120:4293:116:4126:-300.48,0,-315.502	1/1:316:0,316:0:0:316:11279:-1014.99,-95.1255,0	0/1:149:62,87:62:2220:87:3082:-232.754,0,-155.211	0/1:37:16,21:16:572:21:748:-56.5072,0,-40.6753	0/1:154:75,79:75:2696:79:2805:-206.331,0,-196.525	1/1:498:2,496:2:72:496:17716:-1587.21,-143.076,0	1/1:201:0,201:0:0:201:7191:-647.244,-60.507,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:378:186,192:186:6658:192:6814:-499.545,0,-485.505	0/1:206:110,96:110:3940:96:3398:-244.022,0,-292.78	1/1:115:3,112:3:108:112:3986:-348.853,-24.5433,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:5:3,2:3:108:2:57:-3.90816,0,-8.57002	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:240:131,109:131:4681:109:3893:-278.316,0,-349.203	1/1:284:1,283:1:36:283:10114:-906.591,-81.8942,0	0/1:34:9,25:9:324:25:900:-71.086,0,-19.2708	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:264:0,264:0:0:264:9409:-846.772,-79.4719,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:278:141,137:141:5055:137:4863:-354.137,0,-371.403	0/1:56:28,28:28:999:28:1008:-74.1787,0,-73.3668	0/1:62:35,27:35:1260:27:964:-68.413,0,-95.0416	0/1:175:87,86:87:3120:86:3076:-224.629,0,-228.588	0/1:199:89,110:89:3183:110:3936:-294.528,0,-226.788	1/1:348:2,346:2:68:346:12364:-1105.12,-98.3007,0	1/1:129:0,129:0:0:129:4605:-414.614,-38.8329,0	0/1:150:75,75:75:2692:75:2676:-195.931,0,-197.37	0/1:231:89,142:89:3188:142:5065:-386.457,0,-217.606	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:167:0,167:0:0:167:5911:-532.097,-50.272,0	1/1:81:0,81:0:0:81:2885:-259.885,-24.3834,0	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/1:171:85,86:85:3036:86:3040:-222.351,0,-221.995	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	0/1:18:2,16:2:72:16:572:-46.3949,0,-1.41818	0/1:21:13,8:13:468:8:273:-18.5786,0,-36.138	0/1:122:66,56:66:2368:56:1974:-141.206,0,-176.652	1/1:91:0,90:0:0:90:3213:-289.032,-27.0927,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:285:0,285:0:0:285:10168:-915.049,-85.7936,0	1/1:259:5,254:5:180:254:9041:-797.114,-61.4147,0	1/1:80:0,80:0:0:80:2853:-257.002,-24.0824,0	1/1:159:0,159:0:0:159:5685:-511.768,-47.8638,0	1/1:286:7,279:7:252:279:9994:-876.341,-63.0656,0	1/1:202:3,199:3:108:199:7080:-627.183,-50.7329,0	1/1:23:0,23:0:0:23:813:-73.49,-6.92369,0	1/1:70:0,70:0:0:70:2516:-226.691,-21.0721,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	1/1:236:0,236:0:0:236:8360:-752.41,-71.0431,0	0/1:126:50,76:50:1792:76:2705:-205.763,0,-123.633	0/1:129:69,60:69:2468:60:2141:-154.123,0,-183.541	1/1:242:1,241:1:36:241:8602:-770.574,-69.251,0	1/1:173:2,171:2:72:171:6110:-543.163,-45.2415,0	1/1:133:1,132:1:36:132:4728:-422.08,-36.4387,0	0/1:10:5,4:5:180:4:144:-9.80785,0,-13.483	1/1:168:0,168:0:0:168:5941:-534.798,-50.573,0	1/1:161:0,161:0:0:161:5757:-518.245,-48.4658,0	1/1:337:5,331:5:180:331:11846:-1049.45,-84.9206,0	1/1:67:0,67:0:0:67:2395:-215.806,-20.169,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	0/1:58:33,25:33:1184:25:896:-63.5006,0,-89.4086	1/1:145:0,145:0:0:145:5207:-468.767,-43.6494,0	0/1:31:13,18:13:464:18:648:-49.32,0,-32.7656	1/1:81:0,81:0:0:81:2888:-260.025,-24.3834,0	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	1/1:28:0,28:0:0:28:993:-89.6825,-8.42884,0	0/1:92:47,45:47:1692:45:1604:-116.955,0,-124.872	0/1:117:77,40:77:2756:40:1440:-94.6772,0,-213.061	1/1:177:0,177:0:0:177:6349:-571.007,-53.2823,0	1/1:96:0,96:0:0:96:3447:-310.442,-28.8989,0
chr06	7342076	.	A	G	14466.8	PASS	AB=0.500846;ABP=3.02132;AC=48;AF=0.255319;AN=188;AO=891;CIGAR=1X;DP=4275;DPB=4275;DPRA=0.691961;EPP=1937.79;EPPR=7349.1;GTI=1;LEN=1;MEANALT=1.01961;MQM=53.5455;MQMR=59.4437;NS=94;NUMALT=1;ODDS=1.68644;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31893;QR=121272;RO=3383;RPL=0;RPP=1937.79;RPPR=7349.1;RPR=891;RUN=1;SAF=891;SAP=1937.79;SAR=0;SRF=3383;SRP=7349.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:15,22:15:540:22:792:-59.5524,0,-37.7984	0/1:39:13,26:13:464:26:930:-72.0164,0,-30.3379	0/1:89:39,50:39:1392:50:1773:-131.21,0,-98.6731	0/0:101:100,1:100:3576:1:36:0,-26.8083,-317.994	0/1:14:4,10:4:144:10:356:-28.1052,0,-9.0992	0/1:14:10,4:10:360:4:144:-9.06573,0,-28.516	0/0:32:31,1:31:1116:1:36:0,-6.03728,-97.1513	0/1:57:13,44:13:468:44:1580:-124.681,0,-25.3009	0/1:44:26,18:26:936:18:644:-44.8971,0,-71.3141	0/1:57:25,32:25:896:32:1152:-86.7564,0,-63.7946	0/1:22:6,16:6:216:16:576:-45.5124,0,-13.1631	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.233	0/1:40:16,24:16:576:24:860:-65.4836,0,-40.1256	0/1:31:19,12:19:680:12:432:-29.8301,0,-52.14	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.667	0/1:37:21,16:21:756:16:572:-40.438,0,-57.1426	0/1:18:11,7:11:392:7:228:-15.3484,0,-30.1805	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2366	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4376	0/1:45:23,22:23:828:22:780:-56.7378,0,-61.2954	0/1:71:35,36:35:1226:36:1296:-94.9891,0,-89.0614	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.259	0/1:24:19,5:19:680:5:180:-9.31541,0,-54.2965	0/1:22:15,7:15:540:7:248:-16.0117,0,-42.2826	0/1:40:11,29:11:392:29:1040:-81.7257,0,-23.5789	0/0:168:168,0:168:6013:0:0:0,-50.573,-540.261	0/0:114:114,0:114:4076:0:0:0,-34.3174,-366.897	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:109:61,48:61:2188:48:1728:-122.758,0,-164.367	0/1:68:38,30:38:1368:30:1080:-76.608,0,-102.937	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.708	0/1:9:5,4:5:180:4:144:-10.5855,0,-13.8428	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4198	0/1:4:1,3:1:21:3:108:-8.84572,0,-0.895826	0/1:9:4,5:4:144:5:176:-12.9449,0,-10.6043	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:108:56,52:56:2016:52:1860:-134.954,0,-149.201	0/0:94:94,0:94:3376:0:0:0,-28.2968,-303.627	0/1:26:17,9:17:612:9:320:-21.2184,0,-47.5703	0/1:5:1,4:1:32:4:144:-11.7896,0,-1.69416	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.168	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:47:25,22:25:900:22:788:-56.5104,0,-67.1588	0/1:30:18,12:18:644:12:428:-29.7873,0,-49.2578	0/1:27:12,15:12:432:15:540:-40.762,0,-31.091	0/1:46:19,27:19:676:27:964:-73.1464,0,-47.3188	0/1:58:26,31:26:932:31:1116:-82.6054,0,-66.6731	0/0:96:96,0:96:3456:0:0:0,-28.8989,-310.597	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:81:43,38:43:1540:38:1360:-98.1478,0,-114.503	0/1:48:36,12:36:1292:12:432:-24.7608,0,-102.132	0/1:9:7,2:7:252:2:72:-4.12252,0,-20.3173	0/0:94:94,0:94:3376:0:0:0,-28.2968,-303.579	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:8:5,3:5:180:3:108:-7.6416,0,-14.1438	0/1:44:20,24:20:716:24:860:-64.2253,0,-51.5132	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5035	0/1:4:2,2:2:72:2:72:-5.63069,0,-5.6326	0/1:11:4,7:4:144:7:252:-19.6666,0,-10.0023	0/1:45:26,19:26:932:19:680:-47.7651,0,-70.4961	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.512	0/1:4:1,3:1:36:3:108:-8.86378,0,-2.39415	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.241	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.054	0/0:53:53,0:53:1878:0:0:0,-15.9546,-169.227	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.081	0/0:91:91,0:91:3272:0:0:0,-27.3937,-293.669	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.16	0/0:21:20,1:20:720:1:36:0,-2.72846,-61.5264	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.174	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.032	0/1:7:4,3:4:144:3:108:-7.96069,0,-11.204	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.931	0/1:59:33,26:33:1184:26:921:-64.6871,0,-89.1072	0/1:77:38,39:38:1360:39:1402:-102.562,0,-99.5121	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.187	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.943	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.289	0/1:13:8,5:8:288:5:176:-11.7373,0,-22.3458	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.564	0/0:23:23,0:23:824:0:0:0,-6.92369,-73.3675	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.068	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.736	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.771	0/1:16:8,8:8:288:8:284:-21.0694,0,-21.4505	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.51	0/1:14:7,7:7:248:7:252:-18.7566,0,-18.4498	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.917	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.806	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.071	0/1:51:25,26:25:896:26:927:-68.1132,0,-65.5986	0/1:35:13,22:13:464:22:792:-60.9202,0,-31.5591	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9073	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.154
chr06	7393720	.	TATTG	AATTG,AATTA	166084	PASS	AB=0.467925,0.53036;ABP=29.0598,26.3482;AC=140,48;AF=0.744681,0.255319;AN=188;AO=4549,1553;CIGAR=1X4M,1X3M1X;DP=6111;DPB=6111;DPRA=65.6989,0.978702;EPP=3.59506,3.02288;EPPR=3.73412;GTI=1;LEN=1,5;MEANALT=1.6129,2.05769;MQM=54.5223,59.6227;MQMR=57.3333;NS=94;NUMALT=2;ODDS=3.30457;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=161666,54255;QR=85;RO=3;RPL=1,0;RPP=9872.35,3375.31;RPPR=9.52472;RPR=4548,1553;RUN=1,1;SAF=2293,775;SAP=3.66379,3.02288;SAR=2256,778;SRF=2;SRP=3.73412;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:18:0,9,9:0:0:9,9:324,317:-52.5368,-26.1569,-23.4477,-26.7355,0,-24.0262	1/2:37:0,24,13:0:0:24,13:849,447:-105.301,-36.6434,-29.4187,-69.0044,0,-65.091	1/2:69:0,26,42:0:0:26,42:894,1471:-192.208,-119.759,-111.932,-72.5214,0,-59.8781	1/1:65:1,64,0:1:22:64,0:2251,0:-200.499,-17.367,0,-200.8,-19.2659,-202.477	1/2:27:0,15,12:0:0:15,12:521,425:-77.1737,-34.9747,-30.4593,-42.5494,0,-38.9371	1/2:49:1,14,34:1:30:14,34:489,1202:-134.864,-95.5456,-93.7282,-37.2702,0,-29.4306	1/1:64:0,64,0:0:0:64,0:2244,0:-201.91,-19.2659,0,-201.91,-19.2659,-201.91	1/2:60:0,29,31:0:0:29,31:1025,1091:-172.2,-89.154,-80.4242,-83.3978,0,-74.0658	1/2:47:0,15,32:0:0:15,32:540,1121:-135.558,-91.5586,-87.0431,-44.3562,0,-34.7232	1/2:46:0,17,29:0:0:17,29:612,1023:-133.378,-83.5624,-78.4449,-50.1717,0,-41.4419	1/2:117:0,58,59:0:0:58,59:2075,2030:-333.843,-165.208,-147.748,-168.986,0,-151.225	1/1:176:0,176,0:0:0:176,0:6262,0:-562.169,-52.9813,0,-562.169,-52.9813,-562.169	1/2:159:0,76,83:0:0:76,83:2678,2917:-455.245,-237.761,-214.882,-217.835,0,-192.85	1/2:134:0,70,64:0:0:70,64:2492,2227:-383.837,-181.406,-160.334,-202.782,0,-183.516	1/1:119:0,119,0:0:0:119,0:4247,0:-381.826,-35.8226,0,-381.826,-35.8226,-381.826	1/2:175:0,71,104:0:0:71,104:2548,3593:-499.316,-292.218,-270.845,-207.451,0,-176.144	1/2:111:0,59,52:0:0:59,52:2097,1814:-318.281,-147.886,-130.125,-170.747,0,-155.093	1/1:106:0,106,0:0:0:106,0:3795,0:-340.385,-31.9092,0,-340.385,-31.9092,-340.385	1/1:63:0,63,0:0:0:63,0:2229,0:-199.43,-18.9649,0,-199.43,-18.9649,-199.43	1/2:60:0,22,38:0:0:22,38:792,1290:-169.169,-104.943,-98.3203,-64.5767,0,-53.1375	1/2:68:0,39,29:0:0:39,29:1376,1013:-194.608,-82.7447,-71.0046,-112.213,0,-103.484	1/1:13:0,13,0:0:0:13,0:468,0:-42.4397,-3.91339,0,-42.4397,-3.91339,-42.4397	1/2:33:0,17,16:0:0:17,16:608,541:-93.6564,-44.1917,-39.0742,-49.8118,0,-44.9953	1/2:44:0,23,21:0:0:23,21:820,755:-128.696,-61.9554,-55.0317,-67.0982,0,-60.7766	1/2:27:0,10,17:0:0:10,17:345,584:-75.7631,-47.7638,-44.7535,-28.3434,0,-23.2259	1/1:95:0,94,0:0:0:94,0:3319,0:-298.423,-28.2968,0,-298.423,-28.2968,-298.423	1/1:76:0,76,0:0:0:76,0:2700,0:-242.911,-22.8783,0,-242.911,-22.8783,-242.911	1/1:59:0,58,0:0:0:58,0:2065,0:-185.249,-17.4597,0,-185.249,-17.4597,-185.249	1/2:87:0,41,46:0:0:41,46:1383,1614:-243.683,-131.699,-119.357,-112.327,0,-98.48	1/2:24:0,13,11:0:0:13,11:468,375:-68.9045,-30.7655,-26.8521,-38.4883,0,-35.177	1/1:28:0,28,0:0:0:28,0:1000,0:-90.2525,-8.42884,0,-90.2525,-8.42884,-90.2525	1/1:3:0,3,0:0:0:3,0:108,0:-10.0622,-0.90309,0,-10.0622,-0.90309,-10.0622	1/1:3:0,3,0:0:0:3,0:108,0:-10.0609,-0.90309,0,-10.0609,-0.90309,-10.0609	1/2:5:0,1,4:0:0:1,4:36,144:-15.0435,-12.1095,-11.8085,-3.29354,0,-2.08942	1/2:2:0,1,1:0:0:1,1:32,36:-5.84346,-3.29724,-2.99621,-2.88546,0,-2.58443	1/1:2:0,2,0:0:0:2,0:72,0:-6.82461,-0.60206,0,-6.82461,-0.60206,-6.82461	1/2:276:0,130,145:0:0:130,145:4606,5085:-788.5,-413.832,-374.698,-374.711,0,-331.062	1/1:14:0,14,0:0:0:14,0:504,0:-45.643,-4.21442,0,-45.643,-4.21442,-45.643	1/2:106:0,52,54:0:0:52,54:1851,1868:-302.509,-152.135,-136.482,-150.724,0,-134.469	1/2:5:0,2,3:0:0:2,3:72,107:-14.9459,-9.07908,-8.47702,-6.22497,0,-5.32188	1/1:49:0,49,0:0:0:49,0:1751,0:-157.657,-14.7505,0,-157.657,-14.7505,-157.657	1/1:65:0,65,0:0:0:65,0:2313,0:-207.775,-19.567,0,-207.775,-19.567,-207.775	1/2:69:0,28,41:0:0:28,41:993,1441:-198.283,-117.639,-109.21,-80.9966,0,-68.6544	1/2:105:0,53,52:0:0:53,52:1884,1843:-303.685,-150.446,-134.491,-153.594,0,-137.94	1/2:106:0,59,47:0:0:59,47:2103,1641:-305.085,-133.822,-116.061,-171.615,0,-157.467	1/2:40:0,13,27:0:0:13,27:468,934:-114.05,-76.0113,-72.0979,-38.393,0,-30.2652	1/2:20:0,9,11:0:0:9,11:320,386:-57.7974,-31.7564,-29.0471,-26.394,0,-23.0827	1/1:44:0,44,0:0:0:44,0:1542,0:-138.799,-13.2453,0,-138.799,-13.2453,-138.799	1/1:34:0,34,0:0:0:34,0:1220,0:-110.02,-10.235,0,-110.02,-10.235,-110.02	1/2:57:0,33,24:0:0:33,24:1169,820:-162.033,-66.8853,-56.9513,-95.4948,0,-88.2701	1/2:37:0,14,23:0:0:14,23:485,795:-103.861,-64.9404,-60.7259,-39.2644,0,-32.3407	2/2:1:0,0,1:0:0:0,1:0,31:-3.09945,-3.09945,-3.09945,-0.30103,-0.30103,0	1/1:54:0,54,0:0:0:54,0:1917,0:-171.878,-16.2556,0,-171.878,-16.2556,-171.878	1/1:25:0,25,0:0:0:25,0:896,0:-80.9351,-7.52575,0,-80.9351,-7.52575,-80.9351	1/2:5:0,1,4:0:0:1,4:36,138:-14.4927,-11.5557,-11.2547,-3.29354,0,-2.08942	1/2:50:0,24,26:0:0:24,26:856,903:-143.18,-73.7441,-66.5194,-69.7873,0,-61.9605	1/1:29:0,29,0:0:0:29,0:1031,0:-92.9451,-8.72987,0,-92.945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chr06	7393756	.	A	G	120748	PASS	AB=0.47552;ABP=17.7884;AC=140;AF=0.744681;AN=188;AO=4500;CIGAR=1X;DP=6001;DPB=6001;DPRA=64.5161;EPP=3.94452;EPPR=3.08128;GTI=1;LEN=1;MEANALT=1.02151;MQM=54.5;MQMR=59.6431;NS=94;NUMALT=1;ODDS=2.41385;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159977;QR=53606;RO=1499;RPL=4500;RPP=9774.64;RPPR=3232.04;RPR=0;RUN=1;SAF=2228;SAP=3.94452;SAR=2272;SRF=743;SRP=3.25512;SRR=756;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:8,9:8:288:9:316:-23.6105,0,-21.1465	0/1:36:12,24:12:432:24:860:-66.5723,0,-28.3807	0/1:66:40,26:40:1423:26:932:-64.157,0,-108.491	1/1:63:0,63:0:0:63:2260:-203.504,-18.9649,0	0/1:27:12,15:12:428:15:533:-40.005,0,-30.731	0/1:49:34,15:34:1220:15:540:-33.9277,0,-95.3448	1/1:61:0,61:0:0:61:2170:-195.213,-18.3628,0	0/1:57:29,28:29:1040:28:984:-71.5348,0,-76.7374	0/1:44:29,15:29:1022:15:528:-34.5472,0,-79.0389	0/1:45:28,17:28:1008:17:612:-41.7429,0,-77.399	0/1:117:56,61:56:2008:61:2180:-160.548,0,-145.766	1/1:176:0,176:0:0:176:6253:-561.2,-52.9813,0	0/1:152:80,72:80:2836:72:2523:-180.931,0,-209.7	0/1:136:67,69:67:2383:69:2459:-180.078,0,-173.769	1/1:116:0,116:0:0:116:4112:-369.708,-34.9195,0	0/1:171:100,71:100:3583:71:2518:-174.619,0,-271.017	0/1:111:51,60:51:1828:60:2118:-157.015,0,-131.387	1/1:105:0,105:0:0:105:3716:-333.359,-31.6082,0	1/1:64:0,64:0:0:64:2292:-204.493,-19.2659,0	0/1:60:37,23:37:1324:23:828:-56.642,0,-101.393	0/1:65:29,35:29:1044:35:1231:-91.4551,0,-74.7893	1/1:12:0,12:0:0:12:432:-39.2022,-3.61236,0	0/1:30:15,15:15:532:15:540:-39.786,0,-39.1812	0/1:42:20,22:20:720:22:783:-58.0522,0,-52.4855	0/1:26:17,9:17:612:9:315:-20.7011,0,-47.582	1/1:93:0,92:0:0:92:3270:-294.022,-27.6948,0	1/1:76:0,76:0:0:76:2698:-242.541,-22.8783,0	1/1:58:0,58:0:0:58:2076:-186.26,-17.4597,0	0/1:83:42,41:42:1504:41:1439:-104.756,0,-110.668	0/1:23:10,13:10:326:13:468:-35.478,0,-22.7306	1/1:28:0,28:0:0:28:1008:-90.9707,-8.42884,0	1/1:3:0,3:0:0:3:108:-10.0622,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	0/1:5:4,1:4:140:1:36:-2.08942,0,-11.4394	0/1:2:1,1:1:36:1:32:-2.58443,0,-2.99621	1/1:2:0,2:0:0:2:72:-6.82461,-0.60206,0	0/1:271:139,132:139:4964:132:4705:-341.412,0,-365.26	1/1:13:0,13:0:0:13:468:-42.4079,-3.91339,0	0/1:102:49,53:49:1760:53:1900:-140.063,0,-127.975	0/1:5:3,2:3:108:2:72:-5.32188,0,-8.57002	1/1:47:0,47:0:0:47:1672:-150.562,-14.1484,0	1/1:65:0,65:0:0:65:2307:-207.242,-19.567,0	0/1:68:41,27:41:1467:27:972:-67.0745,0,-111.851	0/1:104:51,53:51:1827:53:1867:-136.735,0,-133.129	0/1:103:44,59:44:1584:59:2107:-158.733,0,-111.838	0/1:39:26,13:26:919:13:464:-30.254,0,-70.9577	0/1:18:10,8:10:356:8:288:-20.8131,0,-26.9545	1/1:44:0,44:0:0:44:1552:-139.768,-13.2453,0	1/1:35:0,35:0:0:35:1243:-112.089,-10.5361,0	0/1:55:24,31:24:860:31:1116:-84.121,0,-61.1623	0/1:33:21,12:21:752:12:428:-28.6857,0,-58.0723	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:51:3,48:3:108:48:1728:-144.799,-5.27736,0	1/1:26:0,26:0:0:26:932:-84.1719,-7.82678,0	0/1:6:4,2:4:144:2:72:-5.01256,0,-11.5074	0/1:48:26,22:26:936:22:777:-55.4554,0,-70.0926	1/1:29:0,29:0:0:29:1031:-92.9451,-8.72987,0	0/1:4:1,3:1:36:3:108:-8.84346,0,-2.39415	0/1:5:3,2:3:108:2:72:-5.32966,0,-8.57002	0/1:31:15,16:15:536:16:570:-42.1304,0,-39.2429	1/1:147:0,147:0:0:147:5259:-472.653,-44.2514,0	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	1/1:28:0,28:0:0:28:1008:-91.0095,-8.42884,0	1/1:50:0,50:0:0:50:1787:-160.863,-15.0515,0	1/1:31:0,31:0:0:31:1097:-98.777,-9.33193,0	1/1:42:0,42:0:0:42:1496:-134.734,-12.6433,0	1/1:47:2,45:2:68:45:1607:-138.426,-7.7815,0	1/1:82:1,81:1:36:81:2893:-256.078,-21.0888,0	1/1:84:0,84:0:0:84:3008:-269.476,-25.2865,0	1/1:32:0,32:0:0:32:1129:-101.598,-9.63296,0	1/1:158:0,158:0:0:158:5591:-502.955,-47.5627,0	0/1:11:9,2:9:320:2:72:-3.52046,0,-25.831	1/1:29:0,29:0:0:29:1023:-92.1135,-8.72987,0	0/1:36:19,17:19:684:17:588:-42.1489,0,-51.0532	0/1:61:28,33:28:1000:33:1180:-87.9916,0,-71.9464	1/1:43:0,43:0:0:43:1518:-136.674,-12.9443,0	1/1:47:0,47:0:0:47:1688:-151.827,-14.1484,0	1/1:50:1,49:1:32:49:1751:-154.093,-11.8522,0	0/1:9:7,2:7:252:2:72:-4.12041,0,-20.3197	1/1:32:1,31:1:36:31:1104:-95.8125,-6.03469,0	1/1:38:0,38:0:0:38:1337:-120.438,-11.4391,0	1/1:53:0,53:0:0:53:1860:-167.468,-15.9546,0	1/1:106:0,106:0:0:106:3762:-338.426,-31.9092,0	1/1:115:1,114:1:36:114:4063:-361.6,-31.0202,0	0/1:152:74,78:74:2656:78:2744:-201.09,0,-193.51	1/1:213:1,212:1:36:212:7517:-671.902,-60.5211,0	0/1:48:19,29:19:684:29:1032:-78.6109,0,-47.4409	1/1:90:0,90:0:0:90:3208:-288.063,-27.0927,0	1/1:122:0,122:0:0:122:4344:-389.999,-36.7257,0	1/1:128:0,128:0:0:128:4552:-408.626,-38.5318,0	0/1:152:75,77:75:2700:77:2711:-196.83,0,-197.437	0/1:110:76,34:76:2720:34:1193:-74.3808,0,-211.922	1/1:40:0,40:0:0:40:1415:-127.335,-12.0412,0	1/1:184:0,184:0:0:184:6531:-587.283,-55.3895,0
chr06	7393763	.	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chr06	7513538	.	A	G	21694	PASS	AB=0.468783;ABP=27.2782;AC=47;AF=0.25;AN=188;AO=1355;CIGAR=1X;DP=6950;DPB=6950;DPRA=0.869565;EPP=2945.36;EPPR=12145.9;GTI=5;LEN=1;MEANALT=1.05556;MQM=59.9535;MQMR=59.9784;NS=94;NUMALT=1;ODDS=1.01871;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48285;QR=200485;RO=5592;RPL=0;RPP=2945.36;RPPR=12145.9;RPR=1355;RUN=1;SAF=1355;SAP=2945.36;SAR=0;SRF=5592;SRP=12145.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:85:48,36:48:1720:36:1292:-90.9763,0,-129.478	0/1:69:45,24:45:1616:24:856:-56.59,0,-124.959	0/0:134:134,0:134:4801:0:0:0,-40.338,-432.243	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:32:18,14:18:648:14:500:-35.7032,0,-49.0189	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/1:59:28,31:28:1004:31:1112:-82.6306,0,-72.9151	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:19:13,6:13:468:6:212:-13.7052,0,-36.7401	0/1:104:60,44:60:2156:44:1572:-110.464,0,-163	0/0:74:73,1:73:2612:1:36:0,-18.6779,-231.54	0/1:88:45,43:45:1616:43:1536:-111.414,0,-119.239	0/1:131:68,63:68:2448:63:2231:-161.619,0,-181.139	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.759	0/1:70:30,40:30:1080:40:1416:-106.665,0,-76.4412	0/1:99:54,45:54:1932:45:1608:-115.208,0,-144.355	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:107:59,48:59:2112:48:1712:-122.153,0,-158.136	0/1:75:43,32:43:1544:32:1152:-81.4129,0,-116.676	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.428	0/1:52:38,14:38:1368:14:496:-29.3207,0,-107.767	0/1:51:26,25:26:936:25:892:-65.2472,0,-69.2069	0/1:54:34,20:34:1208:20:720:-48.8732,0,-92.7705	0/0:180:180,0:180:6449:0:0:0,-54.1854,-580.493	0/0:134:134,0:134:4816:0:0:0,-40.338,-433.585	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:137:67,70:67:2404:70:2508:-184.731,0,-175.375	0/1:60:40,20:40:1436:20:716:-46.7059,0,-111.476	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:214:97,117:97:3454:117:4157:-309.894,0,-246.65	0/0:152:152,0:152:5429:0:0:0,-45.7566,-488.739	0/1:95:42,53:42:1508:53:1888:-141.601,0,-107.417	0/1:3:2,1:2:72:1:27:-1.79669,0,-5.93363	0/0:99:98,1:98:3520:1:36:0,-26.2037,-313.221	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:67:46,21:46:1652:21:740:-46.7544,0,-128.799	0/1:59:28,31:28:1008:31:1099:-81.4587,0,-73.2756	0/1:68:35,33:35:1256:33:1171:-85.2266,0,-92.8752	0/1:38:18,19:18:640:19:680:-50.0313,0,-46.4316	0/1:40:20,19:20:716:19:684:-49.7903,0,-52.6678	0/0:124:123,1:123:4404:1:36:0,-33.7294,-392.934	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/1:125:67,58:67:2404:58:2072:-149.122,0,-178.988	0/1:102:54,48:54:1932:48:1711:-123.57,0,-143.452	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:68:68,0:68:2417:0:0:0,-20.47,-217.785	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:68:26,42:26:932:42:1477:-112.752,0,-63.7288	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:54:28,26:28:1004:26:928:-67.5826,0,-74.4202	0/0:170:170,0:170:6104:0:0:0,-51.1751,-549.459	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:155:155,0:155:5568:0:0:0,-46.6596,-501.241	0/0:171:170,1:170:6108:1:36:0,-47.8779,-546.22	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:38:38,0:38:1360:0:0:0,-11.4391,-121.679	0/0:124:124,0:124:4429:0:0:0,-37.3277,-398.781	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:111:111,0:111:3992:0:0:0,-33.4143,-359.468	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:34:25,9:25:896:9:324:-19.2708,0,-70.7253	0/1:108:59,49:59:2120:49:1752:-125.453,0,-158.557	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:75:74,1:74:2652:1:36:0,-18.979,-235.328	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/0:115:114,1:114:4096:1:36:0,-31.0202,-365.226	0/0:104:103,1:103:3696:1:36:0,-27.7088,-329.243	0/1:101:54,47:54:1940:47:1667:-119.913,0,-144.472	0/0:162:162,0:162:5808:0:0:0,-48.7669,-522.832	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2693	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.861	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:122:120,2:120:4297:2:68:0,-30.2679,-380.447	0/1:164:81,83:81:2896:83:2959:-217.175,0,-211.507	0/1:70:33,37:33:1184:37:1302:-96.392,0,-85.7962	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.601	0/0:141:141,0:141:5060:0:0:0,-42.4452,-455.544
chr06	7596251	.	A	G	31222	PASS	AB=0.452067;ABP=93.7729;AC=49;AF=0.260638;AN=188;AO=2074;CIGAR=1X;DP=10883;DPB=10883;DPRA=0.935631;EPP=4343.12;EPPR=18398.2;GTI=5;LEN=1;MEANALT=1;MQM=40.9812;MQMR=43.5337;NS=94;NUMALT=1;ODDS=0.142604;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74048;QR=312689;RO=8808;RPL=2055;RPP=4343.12;RPPR=18398.2;RPR=19;RUN=1;SAF=2074;SAP=4506.64;SAR=0;SRF=8808;SRP=19129.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:22,17:22:780:17:608:-40.7809,0,-57.619	0/1:55:33,22:33:1149:22:784:-50.8249,0,-85.8762	0/1:94:35,59:35:1240:59:2088:-148.417,0,-81.7281	0/0:550:550,0:550:19536:0:0:0,-165.566,-1711.45	0/1:81:45,36:45:1608:36:1288:-87.6332,0,-117.297	0/1:63:36,27:36:1284:27:960:-62.2573,0,-95.364	0/0:274:274,0:274:9728:0:0:0,-82.4822,-854.946	0/1:163:87,76:87:3104:76:2720:-181.365,0,-225.034	0/1:151:83,68:83:2928:68:2428:-161.914,0,-212.043	0/1:149:86,63:86:3056:63:2264:-153.642,0,-222.608	0/1:71:40,31:40:1436:31:1107:-75.0641,0,-104.507	0/0:92:92,0:92:3285:0:0:0,-27.6948,-290.621	0/1:86:45,41:45:1612:41:1468:-97.1141,0,-115.731	0/1:56:31,25:31:1104:25:885:-59.9061,0,-80.7973	0/0:81:81,0:81:2880:0:0:0,-24.3834,-251.879	0/1:112:49,63:49:1746:63:2255:-160.751,0,-120.534	0/1:74:37,37:37:1316:37:1317:-87.1371,0,-94.9091	0/0:57:57,0:57:2032:0:0:0,-17.1587,-180.736	0/0:55:55,0:55:1963:0:0:0,-16.5566,-173.504	0/1:320:204,116:204:7234:116:4160:-266.753,0,-535.768	0/1:241:149,92:149:5246:92:3287:-211.803,0,-391.174	0/0:116:116,0:116:4090:0:0:0,-34.9195,-362.646	0/1:149:85,64:85:3020:64:2286:-152.893,0,-218.968	0/1:155:84,71:84:2960:71:2533:-171.153,0,-215.04	0/1:77:47,30:47:1645:30:1080:-70.6017,0,-119.777	0/0:405:404,1:404:14369:1:36:0,-118.369,-1265.9	0/0:220:219,1:219:7766:1:36:0,-62.7459,-681.463	0/0:53:53,0:53:1887:0:0:0,-15.9546,-167.209	0/1:298:175,123:175:6233:123:4390:-296.523,0,-459.982	0/1:36:24,12:24:849:12:428:-24.6272,0,-64.6637	0/0:163:163,0:163:5736:0:0:0,-49.0679,-503.112	0/1:8:6,2:6:212:2:72:-4.20508,0,-16.708	0/0:23:23,0:23:804:0:0:0,-6.92369,-71.5946	0/1:14:8,6:8:284:6:216:-14.6154,0,-21.3524	0/1:6:2,4:2:68:4:144:-10.8611,0,-4.31906	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.6788	0/1:204:102,102:102:3636:102:3651:-260.654,0,-261.71	0/0:176:176,0:176:6272:0:0:0,-52.9813,-554.982	0/1:78:39,39:39:1392:39:1404:-95.3262,0,-99.0887	0/1:7:2,5:2:72:5:180:-12.6903,0,-4.61142	0/0:158:158,0:158:5613:0:0:0,-47.5627,-495.307	0/0:55:55,0:55:1956:0:0:0,-16.5566,-171.837	0/1:141:81,60:81:2872:60:2148:-143.811,0,-211.277	0/1:89:45,44:45:1612:44:1557:-109.648,0,-115.155	0/1:71:31,40:31:1112:40:1421:-102.388,0,-75.6587	0/1:155:90,65:90:3204:65:2320:-157.439,0,-237.286	0/1:97:56,41:56:1976:41:1453:-93.9221,0,-146.265	0/0:163:163,0:163:5789:0:0:0,-49.0679,-505.403	0/0:163:163,0:163:5817:0:0:0,-49.0679,-511.03	0/1:147:81,66:81:2864:66:2353:-162.767,0,-206.094	0/1:176:106,70:106:3744:70:2505:-167.326,0,-277.786	0/1:6:3,3:3:100:3:108:-8.05264,0,-7.3915	0/0:127:127,0:127:4508:0:0:0,-38.2308,-399.502	0/0:47:47,0:47:1668:0:0:0,-14.1484,-148.048	0/1:24:9,15:9:324:15:536:-38.3593,0,-21.8731	0/1:132:73,59:73:2600:59:2115:-142.829,0,-190.284	0/0:84:84,0:84:3004:0:0:0,-25.2865,-262.871	1/1:8:0,8:0:0:8:288:-25.5165,-2.40824,0	0/1:33:13,20:13:456:20:708:-53.3177,0,-30.6746	0/1:53:27,26:27:940:26:912:-63.7474,0,-67.4841	0/0:112:111,1:111:3952:1:36:0,-30.1943,-342.981	0/1:3:1,2:1:36:2:72:-5.78683,0,-2.61792	0/0:181:181,0:181:6390:0:0:0,-54.4864,-565.956	0/0:271:270,1:270:9609:1:36:0,-78.0581,-839.535	0/0:100:100,0:100:3544:0:0:0,-30.103,-312.168	0/0:119:119,0:119:4167:0:0:0,-35.8226,-366.805	0/0:190:189,1:189:6731:1:36:0,-53.6747,-585.838	0/0:76:76,0:76:2704:0:0:0,-22.8783,-237.981	0/0:24:24,0:24:847:0:0:0,-7.22472,-74.9446	0/0:110:110,0:110:3881:0:0:0,-33.1133,-343.68	0/0:91:91,0:91:3256:0:0:0,-27.3937,-286.643	0/1:24:11,13:11:396:13:468:-34.3232,0,-28.0407	0/0:154:154,0:154:5457:0:0:0,-46.3586,-482.8	0/1:51:29,22:29:1020:22:788:-52.5035,0,-74.4691	0/1:207:109,98:109:3876:98:3458:-236.582,0,-277.131	0/0:220:220,0:220:7785:0:0:0,-66.2266,-683.13	0/0:72:72,0:72:2564:0:0:0,-21.6742,-227.195	0/0:96:96,0:96:3428:0:0:0,-28.8989,-303.592	0/1:25:11,14:11:384:14:504:-35.251,0,-26.951	0/0:179:179,0:179:6348:0:0:0,-53.8844,-559.283	0/0:151:151,0:151:5379:0:0:0,-45.4555,-476.177	0/0:313:309,4:309:10962:4:140:0,-81.5073,-951.098	0/0:112:112,0:112:3969:0:0:0,-33.7154,-348.087	0/0:70:69,0:69:2434:0:0:0,-20.7711,-214.684	0/1:97:48,49:48:1712:49:1752:-124.437,0,-120.872	0/0:121:121,0:121:4292:0:0:0,-36.4246,-375.141	0/1:52:26,26:26:921:26:932:-63.8271,0,-65.1349	0/0:79:79,0:79:2809:0:0:0,-23.7814,-247.504	0/0:94:94,0:94:3364:0:0:0,-28.2968,-297.774	0/0:29:29,0:29:1035:0:0:0,-8.72987,-91.7985	0/1:112:63,49:63:2244:49:1756:-118.291,0,-163.758	0/1:66:23,43:23:816:43:1544:-115.582,0,-52.0717	0/0:165:165,0:165:5840:0:0:0,-49.6699,-512.192	0/0:124:123,1:123:4384:1:27:0,-34.6385,-381.939
chr06	7596281	.	T	G	173298	PASS	AB=0.36691;ABP=1037.06;AC=139;AF=0.739362;AN=188;AO=8746;CIGAR=1X;DP=13045;DPB=13045;DPRA=10.7792;EPP=18994.7;EPPR=9327.31;GTI=6;LEN=1;MEANALT=1.05376;MQM=43.5053;MQMR=50.1239;NS=94;NUMALT=1;ODDS=1.03712;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=310983;QR=153044;RO=4294;RPL=8738;RPP=18925.3;RPPR=11.0388;RPR=8;RUN=1;SAF=8738;SAP=18925.3;SAR=8;SRF=2084;SRP=11.0388;SRR=2210;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:28,23:28:1004:23:816:-56.7538,0,-72.718	0/1:237:203,34:203:7284:34:1203:-35.8214,0,-579.495	0/1:157:123,34:123:4367:34:1215:-60.4594,0,-333.43	1/1:545:0,544:0:0:544:19357:-1696.37,-163.76,0	0/1:110:61,49:61:2170:49:1747:-120.863,0,-158.424	0/1:106:74,32:74:2644:32:1140:-69.623,0,-200.271	1/1:271:1,270:1:36:270:9605:-840.642,-77.9813,0	0/1:198:117,81:117:4172:81:2899:-195.472,0,-301.6	0/1:198:118,80:118:4173:80:2823:-188.883,0,-303.044	0/1:200:117,83:117:4160:83:2968:-200.191,0,-308.886	0/1:106:65,41:65:2328:41:1451:-95.4305,0,-174.213	1/1:89:0,89:0:0:89:3174:-280.737,-26.7917,0	0/1:117:73,44:73:2600:44:1563:-102.546,0,-189.725	0/1:88:56,32:56:2000:32:1148:-75.0021,0,-150.523	1/1:77:0,77:0:0:77:2760:-241.503,-23.1793,0	0/1:152:103,49:103:3696:49:1751:-108.931,0,-278.276	0/1:115:78,37:78:2796:37:1324:-83.2344,0,-208.819	1/1:55:0,55:0:0:55:1960:-174.339,-16.5567,0	1/1:53:0,53:0:0:53:1874:-166.198,-15.9546,0	0/1:503:297,206:297:10644:206:7328:-489.965,0,-792.827	0/1:319:176,143:176:6294:143:5029:-348.845,0,-457.935	1/1:117:0,117:0:0:117:4163:-368.602,-35.2205,0	0/1:195:113,82:113:4028:82:2940:-198.137,0,-295.274	0/1:208:125,83:125:4454:83:2968:-198.999,0,-328.511	0/1:119:70,49:70:2493:49:1720:-113.147,0,-185.085	1/1:406:1,405:1:36:405:14358:-1267.73,-118.67,0	1/1:216:1,215:1:36:215:7680:-674.062,-61.5418,0	1/1:46:1,45:1:36:45:1586:-136.958,-10.2491,0	0/1:421:247,174:247:8805:174:6214:-421.635,0,-656.22	0/1:197:174,23:174:6213:23:828:-14.2597,0,-496.221	1/1:167:5,162:5:180:162:5755:-488.128,-33.722,0	0/1:9:3,6:3:108:6:216:-16.7394,0,-7.14642	1/1:23:0,23:0:0:23:820:-72.9066,-6.92369,0	0/1:14:6,8:6:216:8:284:-21.3524,0,-14.6154	0/1:11:8,3:8:288:3:100:-5.68307,0,-22.3185	1/1:12:0,12:0:0:12:394:-35.3725,-3.61236,0	0/1:304:204,100:204:7239:100:3544:-223.435,0,-553.124	1/1:178:0,178:0:0:178:6311:-558.36,-53.5833,0	0/1:122:81,40:81:2896:40:1418:-88.4998,0,-217.859	0/1:10:8,2:8:270:2:72:-3.70833,0,-20.485	1/1:159:0,159:0:0:159:5668:-498.824,-47.8638,0	1/1:50:0,50:0:0:50:1780:-156.519,-15.0515,0	0/1:189:107,82:107:3836:82:2891:-198.438,0,-281.281	0/1:139:96,43:96:3372:43:1536:-93.3994,0,-257.91	0/1:87:57,30:57:2035:30:1067:-67.5736,0,-152.808	0/1:193:108,85:108:3825:85:3028:-210.117,0,-281.695	0/1:122:63,58:63:2213:58:2063:-146.544,0,-156.945	1/1:164:0,164:0:0:164:5766:-505.872,-49.3689,0	1/1:160:0,160:0:0:160:5633:-496.091,-48.1648,0	0/1:209:129,79:129:4620:79:2820:-184.059,0,-347.883	0/1:240:135,105:135:4779:105:3739:-258.329,0,-353.143	0/1:13:10,3:10:360:3:108:-5.94543,0,-28.6171	1/1:131:0,131:0:0:131:4657:-412.437,-39.4349,0	1/1:48:0,48:0:0:48:1679:-149.078,-14.4494,0	0/1:25:16,9:16:567:9:324:-21.5721,0,-41.7533	0/1:182:110,72:110:3923:72:2576:-172.999,0,-290.725	1/1:81:0,81:0:0:81:2884:-252.07,-24.3834,0	0/0:13:13,0:13:464:0:0:0,-3.91339,-41.3234	0/1:44:30,14:30:1043:14:496:-30.6797,0,-80.1705	0/1:88:62,26:62:2205:26:903:-53.4699,0,-169.41	1/1:111:1,110:1:36:110:3937:-341.582,-29.8933,0	0/1:3:2,1:2:72:1:36:-2.61792,0,-5.78683	1/1:181:0,181:0:0:181:6451:-571.264,-54.4864,0	1/1:266:2,264:2:72:264:9435:-820.407,-73.3123,0	1/1:99:0,99:0:0:99:3511:-309.186,-29.802,0	1/1:121:0,121:0:0:121:4288:-376.624,-36.4246,0	1/1:192:6,186:6:212:186:6634:-561.299,-38.4048,0	1/1:78:3,75:3:108:75:2671:-224.67,-13.406,0	1/1:24:0,24:0:0:24:833:-73.7024,-7.22472,0	1/1:111:0,111:0:0:111:3960:-350.661,-33.4143,0	1/1:91:0,91:0:0:91:3227:-284.913,-27.3937,0	0/1:38:27,11:27:968:11:396:-23.8263,0,-75.1224	1/1:151:0,151:0:0:151:5361:-474.948,-45.4555,0	0/1:78:48,30:48:1724:30:1072:-70.4251,0,-128.585	0/1:282:167,114:167:5941:114:4024:-268.369,0,-436.36	1/1:218:0,218:0:0:218:7795:-683.449,-65.6245,0	1/1:70:0,70:0:0:70:2504:-222.001,-21.0721,0	1/1:90:1,89:1:36:89:3166:-277.239,-23.4944,0	0/1:24:14,10:14:504:10:360:-25.0668,0,-35.7104	1/1:184:1,183:1:36:183:6538:-571.923,-51.7912,0	1/1:153:0,153:0:0:153:5428:-481.29,-46.0576,0	1/1:321:4,317:4:140:317:11218:-974.624,-83.9155,0	1/1:113:0,113:0:0:113:4036:-353.724,-34.0164,0	1/1:71:1,70:1:36:70:2480:-214.744,-17.7753,0	0/1:137:90,47:90:3228:47:1688:-106.807,0,-244.957	1/1:124:0,124:0:0:124:4435:-387.296,-37.3277,0	0/1:74:51,23:51:1817:23:820:-49.524,0,-136.976	1/1:80:0,80:0:0:80:2833:-249.676,-24.0824,0	1/1:95:0,95:0:0:95:3361:-297.463,-28.5979,0	1/1:29:0,29:0:0:29:1036:-91.4855,-8.72987,0	0/1:162:99,63:99:3491:63:2244:-148.7,0,-259.558	0/1:125:102,23:102:3652:23:824:-34.7529,0,-287.806	1/1:169:0,169:0:0:169:5997:-526.091,-50.8741,0	1/1:121:2,119:2:63:119:4260:-367.523,-30.5151,0
chr06	7679357	.	T	C	167234	PASS	AB=0.482609;ABP=13.8865;AC=142;AF=0.755319;AN=188;AO=7787;CIGAR=1X;DP=9961;DPB=9961;DPRA=21.4108;EPP=16782.2;EPPR=4663.13;GTI=4;LEN=1;MEANALT=1.03226;MQM=59.9893;MQMR=59.9926;NS=94;NUMALT=1;ODDS=0.234507;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278061;QR=77703;RO=2170;RPL=15;RPP=16782.2;RPPR=4663.13;RPR=7772;RUN=1;SAF=7787;SAP=16912.3;SAR=0;SRF=2170;SRP=4715.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	0/1:197:103,94:103:3675:94:3344:-241.873,0,-271.651	1/1:251:2,249:2:72:249:8859:-790.463,-68.7218,0	0/1:69:35,34:35:1256:34:1215:-88.8847,0,-92.5742	0/1:69:28,41:28:1008:41:1452:-110.203,0,-70.2653	1/1:168:0,168:0:0:168:6000:-540.107,-50.573,0	0/1:130:67,63:67:2408:63:2234:-162.189,0,-177.842	0/1:114:69,45:69:2476:45:1607:-110.602,0,-188.768	0/1:152:79,73:79:2836:73:2620:-190.291,0,-209.721	0/1:91:42,49:42:1504:49:1756:-130.93,0,-108.261	1/1:116:0,116:0:0:116:4152:-373.863,-34.9195,0	0/1:93:48,45:48:1728:45:1616:-117.734,0,-127.81	0/1:83:44,39:44:1575:39:1396:-100.954,0,-117.055	1/1:102:0,102:0:0:102:3639:-327.715,-30.7051,0	0/1:74:35,39:35:1256:39:1396:-103.663,0,-91.0691	0/1:35:18,17:18:644:17:612:-44.8774,0,-47.7545	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:35:0,35:0:0:35:1249:-112.714,-10.5361,0	1/1:209:0,209:0:0:209:7471:-672.432,-62.9153,0	0/1:232:125,107:125:4465:107:3800:-272.359,0,-332.18	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	0/1:120:64,56:64:2281:56:1995:-143.7,0,-169.427	0/1:86:37,49:37:1320:49:1743:-131.265,0,-93.2134	0/1:51:35,16:35:1252:16:576:-36.8225,0,-97.6325	1/1:269:1,268:1:36:268:9565:-857.206,-77.3788,0	1/1:246:0,246:0:0:246:8785:-790.639,-74.0534,0	1/1:44:1,43:1:36:43:1540:-135.295,-9.64705,0	0/1:277:135,142:135:4839:142:5075:-373.509,0,-352.278	0/1:102:54,48:54:1904:48:1710:-123.481,0,-140.93	1/1:100:0,100:0:0:100:3563:-320.877,-30.103,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:241:120,121:120:4308:121:4332:-317.507,0,-315.347	1/1:96:1,95:1:36:95:3391:-301.807,-25.3006,0	0/1:58:18,40:18:648:40:1413:-110.006,0,-41.1921	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:123:0,123:0:0:123:4386:-394.914,-37.0267,0	1/1:47:0,47:0:0:47:1678:-151.307,-14.1484,0	0/1:113:56,57:56:1989:57:2039:-149.765,0,-145.266	0/1:72:43,29:43:1548:29:1040:-72.2402,0,-117.939	0/1:57:24,33:24:864:33:1180:-89.3493,0,-60.9239	0/1:133:80,53:80:2853:53:1874:-128.901,0,-216.97	0/1:96:50,46:50:1787:46:1635:-118.539,0,-132.213	1/1:139:0,139:0:0:139:4976:-447.989,-41.8432,0	1/1:121:2,119:2:72:119:4255:-376.292,-29.5879,0	0/1:126:71,55:71:2548:55:1964:-139.105,0,-191.641	0/1:181:98,83:98:3520:83:2958:-211.966,0,-262.522	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:96:0,96:0:0:96:3439:-309.722,-28.8989,0	1/1:74:0,74:0:0:74:2643:-238.116,-22.2762,0	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:173:70,103:70:2508:103:3675:-278.875,0,-173.893	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/1:127:60,67:60:2152:67:2395:-177.576,0,-155.716	1/1:83:2,79:2:72:79:2823:-247.472,-17.9065,0	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	1/1:215:0,215:0:0:215:7712:-694.111,-64.7215,0	1/1:202:2,200:2:72:200:7151:-636.811,-53.9713,0	1/1:90:0,90:0:0:90:3203:-288.494,-27.0927,0	1/1:82:0,82:0:0:82:2924:-263.025,-24.6845,0	1/1:190:3,187:3:108:187:6653:-588.775,-47.1205,0	1/1:231:4,226:4:144:226:8074:-713.364,-56.2831,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:90:0,90:0:0:90:3224:-290.382,-27.0927,0	1/1:48:0,48:0:0:48:1689:-152.294,-14.4494,0	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	1/1:198:0,198:0:0:198:7086:-637.023,-59.6039,0	0/1:160:97,63:97:3480:63:2251:-154.688,0,-265.246	0/1:178:97,81:97:3459:81:2903:-207.921,0,-257.935	1/1:243:0,243:0:0:243:8653:-778.76,-73.1503,0	1/1:91:1,90:1:36:90:3211:-285.615,-23.7955,0	1/1:164:1,163:1:36:163:5826:-520.854,-45.7706,0	0/1:22:9,13:9:320:13:456:-34.7506,0,-22.5197	1/1:135:0,135:0:0:135:4823:-434.22,-40.6391,0	1/1:93:1,92:1:36:92:3299:-293.53,-24.3975,0	1/1:286:0,286:0:0:286:10218:-919.547,-86.0946,0	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	1/1:86:0,86:0:0:86:3056:-275.269,-25.8886,0	0/1:55:28,27:28:1004:27:968:-70.8807,0,-74.1192	1/1:164:2,162:2:72:162:5747:-510.512,-42.5322,0	0/1:23:16,7:16:572:7:252:-16.1053,0,-44.8897	1/1:73:0,73:0:0:73:2599:-234.159,-21.9752,0	1/1:84:0,84:0:0:84:2974:-267.894,-25.2865,0	1/1:73:0,73:0:0:73:2619:-235.957,-21.9752,0	0/1:161:81,80:81:2916:80:2855:-208.722,0,-214.208	0/1:77:53,24:53:1892:24:855:-54.0909,0,-147.379	1/1:157:0,156:0:0:156:5591:-502.951,-46.9607,0	1/1:109:0,109:0:0:109:3912:-352.272,-32.8123,0
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chr06	7692848	.	G	A	10872.8	PASS	AB=0.481953;ABP=7.00747;AC=34;AF=0.180851;AN=188;AO=712;CIGAR=1X;DP=5241;DPB=5241;DPRA=0.921188;EPP=1549.1;EPPR=9831.09;GTI=2;LEN=1;MEANALT=1;MQM=59.9803;MQMR=59.9867;NS=94;NUMALT=1;ODDS=4.99031;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25333;QR=162026;RO=4526;RPL=712;RPP=1549.1;RPPR=9831.09;RPR=0;RUN=1;SAF=0;SAP=1549.1;SAR=712;SRF=0;SRP=9831.09;SRR=4526;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:57:56,1:56:1992:1:36:0,-13.5604,-175.956	0/1:34:18,16:18:644:16:556:-40.1308,0,-48.0556	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:13:6,7:6:216:7:237:-17.7457,0,-15.8771	0/1:16:10,6:10:352:6:212:-14.6083,0,-27.2017	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:46:19,27:19:676:27:972:-73.9505,0,-47.3206	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:29:11,18:11:396:18:640:-49.1994,0,-27.2529	0/0:210:193,17:193:6892:17:608:0,-8.16428,-565.298	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.464	0/1:51:18,33:18:640:33:1171:-90.3441,0,-42.5768	0/1:91:37,54:37:1324:54:1928:-146.403,0,-92.0684	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/1:56:26,30:26:936:30:1065:-79.3042,0,-67.7018	0/1:69:27,42:27:968:42:1478:-112.532,0,-66.6663	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:139:138,0:138:4940:0:0:0,-41.5421,-444.39	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:36:9,27:9:324:27:956:-75.5168,0,-18.6688	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:9:2,7:2:72:7:244:-19.5902,0,-4.12745	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:37:13,24:13:468:24:852:-65.8623,0,-31.3215	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	0/0:24:23,1:23:828:1:36:0,-3.62644,-71.2458	0/0:83:82,1:82:2940:1:36:0,-21.3872,-261.234	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/0:91:90,0:90:3228:0:0:0,-27.0927,-290.382	0/0:212:212,0:212:7576:0:0:0,-63.8184,-681.881	0/0:143:143,0:143:5108:0:0:0,-43.0473,-459.864	0/1:97:41,56:41:1472:56:2008:-151.793,0,-103.576	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:218:194,24:194:6944:24:864:-12.458,0,-559.401	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:143:143,0:143:5124:0:0:0,-43.0473,-461.302	0/1:26:9,17:9:324:17:604:-46.8638,0,-21.6791	0/1:32:15,17:15:540:17:600:-44.6962,0,-39.3036	0/1:35:15,20:15:540:20:716:-54.2317,0,-38.4005	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:45:17,28:17:612:28:985:-75.416,0,-41.8671	0/1:31:12,19:12:432:19:680:-52.1972,0,-29.8893	0/0:109:108,1:108:3876:1:36:0,-29.214,-345.436	0/0:46:46,0:46:1625:0:0:0,-13.8474,-146.537	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5702	0/0:62:61,1:61:2172:1:36:0,-15.0656,-192.149	0/1:31:16,15:16:576:15:532:-38.8812,0,-42.8431	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:164:162,2:162:5777:2:72:0,-42.5322,-513.209	0/1:21:15,6:15:540:6:212:-13.1032,0,-42.6149	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:17:16,1:16:576:1:36:0,-1.51923,-48.5767	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:209:209,0:209:7492:0:0:0,-62.9153,-674.321	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:131:129,2:129:4628:2:72:0,-32.5982,-409.845	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:29:13,16:13:464:16:576:-43.4451,0,-33.3676	0/1:82:48,34:48:1720:34:1216:-85.0621,0,-130.401	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:39:38,1:38:1364:1:36:0,-8.14189,-119.462	0/0:116:115,1:115:4108:1:36:0,-31.3212,-366.308	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.296	0/0:70:69,0:69:2464:0:0:0,-20.7711,-221.655	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:58:31,27:31:1116:27:960:-69.2565,0,-83.292	0/0:64:63,1:63:2260:1:36:0,-15.6676,-200.064	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:311:311,0:311:11120:0:0:0,-93.6203,-1000.69	0/1:57:24,33:24:864:33:1164:-87.9082,0,-60.9239	0/1:33:16,17:16:568:17:597:-44.1221,0,-41.5179	0/0:24:23,1:23:824:1:36:0,-3.62644,-70.8566	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018
chr06	7748165	.	A	C	44268.9	PASS	AB=0.523722;ABP=27.015;AC=47;AF=0.25;AN=188;AO=2587;CIGAR=1X;DP=11419;DPB=11419;DPRA=0.935741;EPP=5577.26;EPPR=19094.7;GTI=2;LEN=1;MEANALT=1.02041;MQM=59.9749;MQMR=59.9922;NS=94;NUMALT=1;ODDS=0.813651;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92265;QR=316511;RO=8828;RPL=5;RPP=5577.26;RPPR=19094.7;RPR=2582;RUN=1;SAF=2587;SAP=5620.61;SAR=0;SRF=8828;SRP=19172.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:11,13:11:392:13:460:-34.5107,0,-28.3953	0/0:211:211,0:211:7557:0:0:0,-63.5173,-680.165	0/1:100:47,53:47:1684:53:1908:-141.895,0,-121.744	0/0:277:277,0:277:9948:0:0:0,-83.3853,-895.255	0/1:25:10,15:10:360:15:540:-41.4108,0,-25.2186	0/1:52:21,31:21:752:31:1095:-83.205,0,-52.3527	0/0:169:169,0:169:6049:0:0:0,-50.8741,-544.512	0/1:109:62,47:62:2224:47:1684:-119.035,0,-167.612	0/1:169:64,105:64:2300:105:3751:-286.916,0,-156.387	0/1:191:93,98:93:3317:98:3495:-257.265,0,-241.251	0/1:115:56,59:56:2007:59:2104:-155.011,0,-146.284	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/1:117:54,63:54:1928:63:2252:-167.723,0,-138.576	0/1:140:72,68:72:2592:68:2431:-176.901,0,-191.384	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511	0/1:82:45,37:45:1620:37:1332:-95.4979,0,-121.406	0/1:140:70,70:70:2520:70:2508:-183.828,0,-184.907	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:58:58,0:58:2060:0:0:0,-17.4597,-185.479	0/0:247:247,0:247:8830:0:0:0,-74.3544,-794.684	0/1:161:72,89:72:2584:89:3188:-238.678,0,-184.343	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:147:77,70:77:2768:70:2491:-180.19,0,-205.109	0/1:208:96,112:96:3444:112:3997:-297.277,0,-247.558	0/1:54:34,20:34:1224:20:712:-48.151,0,-94.2114	0/0:317:317,0:317:11331:0:0:0,-95.4265,-1019.67	0/0:260:260,0:260:9344:0:0:0,-78.2678,-840.919	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:296:124,172:124:4420:172:6112:-461.08,0,-308.866	0/1:196:43,153:43:1544:153:5458:-432.347,0,-80.2512	0/0:267:266,1:266:9500:1:36:0,-76.7767,-851.361	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:342:192,150:192:6900:150:5354:-379.041,0,-518.112	0/0:145:145,0:145:5208:0:0:0,-43.6493,-468.857	0/1:92:52,40:52:1872:40:1428:-101.123,0,-141.064	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:144:144,0:144:5130:0:0:0,-43.3483,-461.841	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:105:47,58:47:1692:58:2072:-155.143,0,-120.959	0/1:151:88,63:88:3164:63:2243:-156.678,0,-239.528	0/1:99:53,46:53:1904:46:1648:-118.807,0,-141.836	0/1:124:55,69:55:1972:69:2452:-183.606,0,-140.427	0/1:99:53,46:53:1904:46:1635:-117.636,0,-141.836	0/0:161:161,0:161:5765:0:0:0,-48.4658,-518.963	0/0:126:126,0:126:4501:0:0:0,-37.9298,-405.258	0/1:216:95,121:95:3404:121:4327:-324.583,0,-241.552	0/1:172:75,97:75:2673:97:3444:-258.396,0,-189.037	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/0:130:130,0:130:4672:0:0:0,-39.1339,-420.639	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:143:79,64:79:2813:64:2279:-162.324,0,-210.361	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:127:69,58:69:2464:58:2039:-145.546,0,-183.784	0/0:165:165,0:165:5928:0:0:0,-49.6699,-533.626	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:220:220,0:220:7892:0:0:0,-66.2266,-710.304	0/0:240:236,4:236:8472:4:144:0,-58.9336,-749.164	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:236:236,0:236:8450:0:0:0,-71.0431,-760.497	0/0:95:95,0:95:3397:0:0:0,-28.5978,-305.943	0/0:66:65,0:65:2328:0:0:0,-19.5669,-209.42	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.882	0/1:28:10,18:10:360:18:644:-49.8618,0,-24.3155	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/1:76:40,36:40:1428:36:1288:-93.3453,0,-105.939	0/1:196:85,111:85:3052:111:3921:-294.037,0,-215.907	0/0:173:172,0:172:6168:0:0:0,-51.7772,-554.966	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:120:119,1:119:4276:1:36:0,-32.5253,-381.418	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.276	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.92	0/0:157:156,0:156:5616:0:0:0,-46.9607,-505.198	0/0:184:184,0:184:6596:0:0:0,-55.3895,-593.719	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/1:171:82,88:82:2925:88:3143:-231.561,0,-211.949	0/0:220:216,4:216:7760:4:144:0,-52.913,-684.09	0/1:135:72,63:72:2580:63:2256:-162.664,0,-191.81	0/0:132:132,0:132:4748:0:0:0,-39.736,-427.476	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:131:67,64:67:2408:64:2292:-167.106,0,-177.541	0/1:117:45,72:45:1605:72:2566:-195.969,0,-109.518	0/0:160:160,0:160:5740:0:0:0,-48.1648,-516.715	0/0:160:160,0:160:5756:0:0:0,-48.1648,-518.152
chr06	7748221	.	CGTT	TGTT,TGTG	256157	PASS	AB=0.47331,0.522527;ABP=28.2789,21.0116;AC=142,46;AF=0.755319,0.244681;AN=188;AO=7571,2165;CIGAR=1X3M,1X2M1X;DP=9764;DPB=9764;DPRA=16.306,0.972435;EPP=5543.13,925.441;EPPR=5.18177;GTI=0;LEN=1,4;MEANALT=1.79348,2.28302;MQM=59.9906,59.9848;MQMR=60;NS=94;NUMALT=2;ODDS=0.372025;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=271279,76208;QR=36;RO=1;RPL=5983,1562;RPP=5543.13,925.441;RPPR=5.18177;RPR=1588,603;RUN=1,1;SAF=0,0;SAP=16443.2,4704.25;SAR=7571,2165;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:50:0,23,27:0:0:23,27:820,946:-144.171,-77.3261,-70.4024,-67.1988,0,-59.071	1/1:80:0,80,0:0:0:80,0:2876,0:-259.076,-24.0824,0,-259.076,-24.0824,-259.076	1/2:188:0,91,97:0:0:91,97:3268,3416:-545.047,-278.456,-251.063,-266.946,0,-237.746	1/1:371:0,371,0:0:0:371,0:13297,0:-1196.51,-111.682,0,-1196.51,-111.682,-1196.51	1/2:20:0,10,10:0:0:10,10:360,358:-58.9278,-29.5526,-26.5423,-29.734,0,-26.7237	1/2:10:0,8,2:0:0:8,2:288,72:-29.734,-6.23466,-3.82642,-23.8592,0,-23.2571	1/1:55:0,55,0:0:0:55,0:1965,0:-177.123,-16.5567,0,-177.123,-16.5567,-177.123	1/2:118:0,50,67:0:0:50,67:1796,2364:-339.139,-192.624,-177.573,-146.644,0,-126.475	1/2:204:0,91,113:0:0:91,113:3260,4002:-592.228,-326.357,-298.964,-266.227,0,-232.21	1/2:117:0,59,58:0:0:59,58:2116,2052:-340.083,-167.491,-149.731,-172.948,0,-155.488	1/2:72:0,35,37:0:0:35,37:1260,1288:-207.896,-105.08,-94.5443,-103.169,0,-92.0313	1/1:131:0,131,0:0:0:131,0:4700,0:-423.158,-39.4349,0,-423.158,-39.4349,-423.158	1/2:95:0,50,43:0:0:50,43:1792,1520:-269.944,-123.789,-108.737,-146.151,0,-133.207	1/2:127:0,64,63:0:0:64,63:2304,2213:-368.412,-180.413,-161.147,-188.355,0,-169.39	1/1:96:0,96,0:0:0:96,0:3452,0:-310.891,-28.8989,0,-310.891,-28.8989,-310.891	1/2:78:0,37,41:0:0:37,41:1323,1440:-225.429,-117.551,-106.412,-108.233,0,-95.891	1/2:54:0,21,33:0:0:21,33:747,1158:-155.469,-94.5903,-88.2687,-61.2327,0,-51.2987	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:187:0,187,0:0:0:187,0:6708,0:-603.794,-56.2926,0,-603.794,-56.2926,-603.794	1/2:233:0,120,113:0:0:120,113:4269,3976:-671.932,-324.019,-287.895,-348.266,0,-314.25	1/1:85:0,85,0:0:0:85,0:3044,0:-274.19,-25.5876,0,-274.19,-25.5876,-274.19	1/2:171:0,81,89:0:0:81,89:2909,3160:-494.838,-257.534,-233.151,-237.36,0,-210.568	1/2:70:0,36,34:0:0:36,34:1292,1205:-203.911,-98.5202,-87.6832,-105.747,0,-95.5117	1/2:57:0,21,36:0:0:21,36:756,1274:-165.814,-104.126,-97.8042,-62.0456,0,-51.2085	1/1:246:0,246,0:0:0:246,0:8828,0:-794.502,-74.0534,0,-794.502,-74.0534,-794.502	1/1:335:0,335,0:0:0:335,0:11999,0:-1079.76,-100.845,0,-1079.76,-100.845,-1079.76	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/2:176:0,81,94:0:0:81,94:2904,3340:-509.016,-272.161,-247.777,-236.852,0,-208.555	1/2:132:0,73,59:0:0:73,59:2599,2094:-382.797,-170.969,-148.993,-212.183,0,-194.423	1/1:152:1,147,4:1:36:147,4:5280,144:-471.735,-41.314,0,-460.287,-32.5017,-462.02	2/2:8:0,0,8:0:0:0,8:0,287:-26.1765,-26.1765,-26.1765,-2.40824,-2.40824,0	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/2:6:0,4,2:0:0:4,2:144,72:-17.9843,-6.23466,-5.03054,-12.1095,0,-11.5074	1/2:9:0,4,5:0:0:4,5:144,179:-26.7058,-14.9552,-13.7511,-12.1095,0,-10.6043	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/2:214:0,109,105:0:0:109,105:3897,3684:-617.914,-300.157,-267.344,-318.111,0,-286.503	1/1:86:0,86,0:0:0:86,0:3096,0:-278.866,-25.8886,0,-278.866,-25.8886,-278.866	1/2:43:0,17,26:0:0:17,26:604,913:-123.878,-74.6581,-69.5406,-49.5731,0,-41.7463	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:95:0,93,0:0:0:93,0:3348,0:-301.215,-27.9958,0,-301.215,-27.9958,-301.215	1/1:31:0,31,0:0:0:31,0:1112,0:-100.387,-9.33193,0,-100.387,-9.33193,-100.387	1/2:142:0,44,98:0:0:44,98:1575,3434:-408.216,-279.776,-266.531,-128.796,0,-99.2946	1/2:59:0,33,25:0:0:33,25:1169,873:-166.231,-71.0012,-61.0672,-95.2216,0,-87.6959	1/2:68:0,40,28:0:0:40,28:1440,967:-196.415,-78.9096,-66.8684,-117.857,0,-109.428	1/2:129:0,69,59:0:0:69,59:2480,2102:-373.653,-171.329,-150.558,-202.322,0,-184.561	1/2:81:0,35,46:0:0:35,46:1256,1595:-232.446,-129.99,-119.454,-102.809,0,-88.9619	1/1:171:0,170,0:0:0:170,0:6082,0:-547.12,-51.1751,0,-547.12,-51.1751,-547.12	1/1:110:0,110,0:0:0:110,0:3948,0:-355.509,-33.1133,0,-355.509,-33.1133,-355.509	1/2:122:0,65,57:0:0:65,57:2328,2009:-353.781,-163.923,-144.357,-190.213,0,-173.054	1/2:159:0,77,82:0:0:77,82:2764,2917:-463.547,-238.083,-214.903,-225.822,0,-201.137	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/1:136:0,136,0:0:0:136,0:4868,0:-438.273,-40.9401,0,-438.273,-40.9401,-438.273	1/1:80:0,80,0:0:0:80,0:2848,0:-256.556,-24.0824,0,-256.556,-24.0824,-256.556	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/2:199:0,97,96:0:0:97,96:3471,3308:-551.771,-268.72,-239.52,-283.076,0,-254.177	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chr06	7992265	.	A	G	33945.2	PASS	AB=0.518141;ABP=14.5131;AC=45;AF=0.241935;AN=186;AO=2108;CIGAR=1X;DP=9454;DPB=9454;DPRA=1.03184;EPP=4580.47;EPPR=15950.3;GTI=0;LEN=1;MEANALT=1.01923;MQM=59.7405;MQMR=59.9917;NS=93;NUMALT=1;ODDS=0.0519233;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73565;QR=261299;RO=7344;RPL=0;RPP=4580.47;RPPR=15950.3;RPR=2108;RUN=1;SAF=0;SAP=4580.47;SAR=2108;SRF=0;SRP=15950.3;SRR=7344;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:31,32:31:1072:32:1106:-80.8613,0,-77.8202	0/0:67:67,0:67:2372:0:0:0,-20.169,-213.739	0/1:79:31,48:31:1112:48:1682:-127.883,0,-76.61	0/0:191:191,0:191:6780:0:0:0,-57.4967,-610.275	0/1:65:24,41:24:847:41:1425:-108.968,0,-56.9818	0/1:55:20,35:20:720:35:1216:-93.1757,0,-48.5721	0/0:128:126,2:126:4447:2:72:0,-31.7,-393.57	0/1:120:62,58:62:2173:58:2041:-147.812,0,-159.712	0/1:166:82,84:82:2922:84:2967:-217.272,0,-213.243	0/1:75:36,39:36:1265:39:1359:-100.028,0,-91.5731	0/1:59:24,35:24:841:35:1196:-90.1712,0,-58.2456	0/0:140:140,0:140:4961:0:0:0,-42.1442,-446.64	0/1:97:62,35:62:2202:35:1208:-79.812,0,-169.244	0/1:79:38,41:38:1334:41:1427:-104.936,0,-96.577	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.345	0/1:77:41,36:41:1467:36:1248:-89.4316,0,-109.146	0/1:29:9,20:9:316:20:678:-52.6005,0,-20.049	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:177:177,0:177:6303:0:0:0,-53.2823,-567.364	0/1:174:80,93:80:2820:93:3257:-240.895,0,-201.605	0/0:159:159,0:159:5656:0:0:0,-47.8638,-509.162	0/1:255:133,122:133:4733:122:4244:-305.363,0,-349.367	0/1:51:22,29:22:780:29:999:-74.8638,0,-55.1705	0/1:107:43,64:43:1540:64:2237:-169.36,0,-106.683	0/0:237:237,0:237:8473:0:0:0,-71.3441,-762.571	0/0:262:261,1:261:9281:1:36:0,-75.2716,-831.664	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:219:89,130:89:3184:130:4555:-344.189,0,-220.859	0/1:126:63,63:63:2227:63:2224:-162.475,0,-162.765	0/0:217:215,2:215:7667:2:72:0,-58.4868,-683.229	.:.:.:.:.:.:.:.	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/1:252:124,128:124:4408:128:4475:-327.06,0,-321.021	0/0:129:129,0:129:4609:0:0:0,-38.8329,-414.973	0/1:60:30,30:30:1071:30:1026:-74.5821,0,-78.6398	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.477	0/0:42:41,1:41:1460:1:36:0,-9.04498,-128.098	0/1:204:110,94:110:3917:94:3285:-234.438,0,-291.313	0/1:68:33,35:33:1184:35:1225:-90.0816,0,-86.3983	0/1:64:28,36:28:991:36:1266:-94.9657,0,-70.2376	0/1:114:68,46:68:2432:46:1590:-109.066,0,-184.818	0/1:107:45,62:45:1612:62:2180:-164.246,0,-113.16	0/0:176:176,0:176:6265:0:0:0,-52.9813,-563.944	0/0:147:147,0:147:5209:0:0:0,-44.2514,-468.931	0/1:105:47,58:47:1664:58:2029:-151.263,0,-118.437	0/1:160:69,91:69:2443:91:3216:-241.498,0,-171.958	1/1:3:0,3:0:0:3:108:-10.0727,-0.90309,0	0/0:70:70,0:70:2511:0:0:0,-21.0721,-226.241	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:162:78,84:78:2756:84:2955:-217.37,0,-199.514	0/0:79:79,0:79:2791:0:0:0,-23.7814,-251.429	0/1:8:3,5:3:108:5:161:-12.3974,0,-7.66693	0/1:20:7,13:7:252:13:464:-36.0769,0,-17.0084	0/1:97:44,53:44:1576:53:1831:-135.844,0,-112.932	0/0:105:105,0:105:3707:0:0:0,-31.6081,-333.831	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:176:176,0:176:6285:0:0:0,-52.9813,-565.743	0/0:115:113,2:113:4017:2:68:0,-28.1607,-355.262	0/0:65:64,0:64:2263:0:0:0,-19.2659,-203.61	0/0:83:83,0:83:2967:0:0:0,-24.9855,-267.263	0/0:192:192,0:192:6853:0:0:0,-57.7978,-616.84	0/0:114:109,5:109:3890:5:176:0,-18.1324,-334.109	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.571	0/1:23:12,11:12:423:11:374:-27.0627,0,-31.4814	0/0:188:188,0:188:6610:0:0:0,-56.5936,-594.986	0/1:71:33,38:33:1184:38:1349:-100.335,0,-85.4952	0/1:276:150,126:150:5358:126:4400:-312.999,0,-399.268	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:197:197,0:197:7031:0:0:0,-59.3029,-632.852	0/0:75:74,1:74:2643:1:36:0,-18.979,-234.518	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.441	0/0:98:98,0:98:3465:0:0:0,-29.5009,-312.061	0/0:218:215,3:215:7690:3:108:0,-55.5494,-682.059	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:87:87,0:87:3102:0:0:0,-26.1896,-279.407	0/1:72:34,38:34:1216:38:1270:-92.9194,0,-88.0724	0/0:159:158,1:158:5631:1:36:0,-44.2655,-503.287	0/1:27:14,13:14:504:13:451:-32.7887,0,-37.5703	0/0:75:75,0:75:2652:0:0:0,-22.5772,-238.925	0/0:87:87,0:87:3069:0:0:0,-26.1896,-276.44	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/1:128:78,50:78:2779:50:1741:-118.433,0,-211.819	0/1:82:30,52:30:1080:52:1784:-136.141,0,-72.8288	0/0:146:146,0:146:5157:0:0:0,-43.9504,-464.272	0/0:153:153,0:153:5454:0:0:0,-46.0576,-490.99
chr06	7992291	.	C	T	30199.1	PASS	AB=0.492947;ABP=4.66443;AC=45;AF=0.241935;AN=186;AO=1900;CIGAR=1X;DP=9293;DPB=9293;DPRA=0.933532;EPP=4120.13;EPPR=15928.8;GTI=3;LEN=1;MEANALT=1.08;MQM=59.7405;MQMR=59.987;NS=93;NUMALT=1;ODDS=1.01359;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66268;QR=263499;RO=7386;RPL=1;RPP=4120.13;RPPR=15928.8;RPR=1899;RUN=1;SAF=0;SAP=4128.81;SAR=1900;SRF=0;SRP=16041.5;SRR=7386;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:29,31:29:1028:31:1099:-81.1438,0,-74.7712	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/1:72:29,43:29:1040:43:1516:-115.05,0,-72.2402	0/0:196:196,0:196:6989:0:0:0,-59.0019,-629.076	0/1:63:24,39:24:864:39:1380:-105.521,0,-59.1177	0/1:51:19,32:19:680:32:1110:-84.8421,0,-46.1766	0/0:129:127,2:127:4548:2:72:0,-32.0011,-402.655	0/1:116:59,56:59:2087:56:1965:-142.259,0,-153.259	0/1:162:82,80:82:2944:80:2724:-196.617,0,-216.427	0/1:74:36,38:36:1292:38:1320:-96.8189,0,-94.3075	0/1:57:25,32:25:887:32:1128:-84.6686,0,-62.9894	0/0:143:143,0:143:5069:0:0:0,-43.0473,-456.356	0/1:94:62,32:62:2220:32:1140:-74.6042,0,-171.768	0/1:80:39,41:39:1378:41:1436:-105.446,0,-100.235	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.43	0/1:75:42,33:42:1482:33:1143:-80.5915,0,-111.096	0/1:27:10,17:10:347:17:608:-46.916,0,-23.4358	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:178:178,0:178:6346:0:0:0,-53.5833,-571.233	0/1:173:83,90:83:2942:90:3176:-233.968,0,-212.936	0/0:161:161,0:161:5723:0:0:0,-48.4658,-515.189	0/1:227:129,97:129:4603:97:3273:-226.392,0,-346.04	0/1:44:21,23:21:741:23:797:-58.8006,0,-53.7663	0/1:104:43,61:43:1532:61:2127:-160.366,0,-106.866	0/0:230:230,0:230:8236:0:0:0,-69.2369,-741.251	0/0:262:262,0:262:9371:0:0:0,-78.8699,-843.354	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/1:211:93,118:93:3331:118:4121:-307.555,0,-236.434	0/1:120:60,60:60:2152:60:2144:-157.098,0,-157.824	0/0:215:214,1:214:7657:1:36:0,-61.1232,-685.566	.:.:.:.:.:.:.:.	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3376	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:240:120,119:120:4254:119:4186:-304.618,0,-310.645	0/0:128:128,0:128:4572:0:0:0,-38.5318,-411.647	0/1:57:31,26:31:1080:26:902:-64.3342,0,-80.3471	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.957	0/0:44:44,0:44:1547:0:0:0,-13.2453,-139.518	0/1:192:114,78:114:4088:78:2674:-183.094,0,-310.307	0/1:66:33,33:33:1184:33:1113:-80.5979,0,-87.0003	0/1:59:28,31:28:995:31:1104:-81.9042,0,-72.1032	0/1:112:70,42:70:2511:42:1473:-99.1462,0,-192.526	0/1:98:43,54:43:1544:54:1893:-141.085,0,-109.693	0/0:174:174,0:174:6207:0:0:0,-52.3792,-558.726	0/0:148:148,0:148:5288:0:0:0,-44.5524,-475.927	0/1:102:48,54:48:1715:54:1928:-143.074,0,-123.93	0/1:152:69,83:69:2468:83:2940:-219.076,0,-176.618	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:71:70,0:70:2499:0:0:0,-21.0721,-224.803	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:153:80,73:80:2856:73:2508:-179.872,0,-211.221	0/0:79:79,0:79:2803:0:0:0,-23.7814,-252.511	0/1:8:3,5:3:108:5:180:-14.1429,0,-7.66693	0/1:19:7,12:7:252:12:415:-31.9607,0,-17.3094	0/1:91:43,48:43:1535:48:1673:-123.438,0,-111.049	0/0:107:105,0:105:3764:0:0:0,-31.6081,-338.643	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:178:178,0:178:6358:0:0:0,-53.5833,-572.311	0/0:112:112,0:112:4011:0:0:0,-33.7154,-361.178	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.425	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145	0/0:195:194,1:194:6908:1:36:0,-55.1026,-618.189	0/0:118:115,3:115:4093:3:104:0,-25.8187,-358.838	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.472	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.302	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/0:190:189,1:189:6715:1:36:0,-53.5974,-600.827	0/1:71:32,39:32:1152:39:1373:-102.493,0,-82.617	0/1:253:152,101:152:5428:101:3423:-232.101,0,-412.488	0/0:115:115,0:115:4115:0:0:0,-34.6184,-370.534	0/0:201:201,0:201:7154:0:0:0,-60.507,-643.921	0/0:77:76,1:76:2721:1:36:0,-19.581,-241.533	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/0:101:101,0:101:3599:0:0:0,-30.404,-324.115	0/0:223:223,0:223:7970:0:0:0,-67.1297,-717.323	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/0:86:86,0:86:3066:0:0:0,-25.8886,-276.168	0/1:71:33,38:33:1173:38:1352:-100.607,0,-84.5024	0/0:157:157,0:157:5577:0:0:0,-47.2617,-502.042	0/1:22:14,8:14:500:8:263:-17.3651,0,-38.7135	0/0:76:76,0:76:2704:0:0:0,-22.8783,-243.602	0/0:82:81,1:81:2900:1:36:0,-21.0862,-257.638	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/1:126:79,47:79:2810:47:1626:-108.687,0,-215.207	0/1:75:29,46:29:1029:46:1615:-123.055,0,-70.3439	0/0:148:148,0:148:5283:0:0:0,-44.5524,-475.607	0/0:152:152,0:152:5394:0:0:0,-45.7566,-485.59
chr06	8011199	.	C	T	170877	PASS	AB=0.48224;ABP=14.1173;AC=142;AF=0.755319;AN=188;AO=7958;CIGAR=1X;DP=10078;DPB=10078;DPRA=18.0502;EPP=17266.2;EPPR=4582.66;GTI=3;LEN=1;MEANALT=1.03226;MQM=59.9673;MQMR=59.9915;NS=94;NUMALT=1;ODDS=1.72957;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284153;QR=75318;RO=2117;RPL=7957;RPP=17274.9;RPPR=4582.66;RPR=1;RUN=1;SAF=7957;SAP=17274.9;SAR=1;SRF=2117;SRP=4600.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:11,2:11:387:2:72:-2.92333,0,-31.2525	1/1:159:0,159:0:0:159:5667:-510.149,-47.8638,0	0/1:150:97,53:97:3439:53:1900:-126.088,0,-264.568	1/1:209:0,209:0:0:209:7472:-671.746,-62.9153,0	0/1:28:14,14:14:500:14:504:-37.2693,0,-36.9073	0/1:67:38,29:38:1360:29:1027:-72.5732,0,-102.532	1/1:154:0,154:0:0:154:5500:-495.125,-46.3586,0	0/1:186:101,85:101:3600:85:3037:-217.567,0,-268.191	0/1:109:44,65:44:1571:65:2289:-173.456,0,-108.869	0/1:121:53,68:53:1883:68:2444:-183.79,0,-133.323	0/1:54:19,35:19:671:35:1249:-96.4587,0,-44.4602	1/1:82:0,82:0:0:82:2917:-262.766,-24.6845,0	0/1:68:30,38:30:1076:38:1351:-101.42,0,-76.6828	0/1:84:44,40:44:1556:40:1436:-104.251,0,-115.042	1/1:72:2,70:2:72:70:2494:-217.876,-14.8374,0	0/1:51:33,18:33:1157:18:644:-42.9381,0,-89.0819	0/1:83:43,40:43:1535:40:1411:-102.301,0,-113.457	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	1/1:25:0,25:0:0:25:852:-76.9897,-7.52575,0	1/1:160:0,160:0:0:160:5735:-516.233,-48.1648,0	0/1:167:112,54:112:3991:54:1944:-124.944,0,-309.087	1/1:106:0,106:0:0:106:3778:-340.219,-31.9092,0	0/1:110:57,53:57:2040:53:1900:-138.165,0,-150.759	0/1:125:55,70:55:1945:70:2520:-189.422,0,-137.696	0/1:72:50,22:50:1787:22:792:-49.9315,0,-139.438	1/1:462:1,461:1:36:461:16491:-1480.19,-135.478,0	1/1:198:0,198:0:0:198:7062:-635.016,-59.6039,0	1/1:35:0,35:0:0:35:1255:-113.255,-10.5361,0	0/1:244:130,114:130:4663:114:4084:-294.294,0,-346.379	0/1:215:118,97:118:4158:97:3450:-245.99,0,-309.682	1/1:197:0,197:0:0:197:7042:-633.84,-59.3029,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:5:2,3:2:57:3:108:-8.57002,0,-3.90816	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:215:96,119:96:3421:119:4236:-316.699,0,-243.382	1/1:156:0,156:0:0:156:5579:-502.231,-46.9607,0	0/1:59:33,26:33:1179:26:922:-65.5356,0,-88.6565	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:187:0,187:0:0:187:6687:-601.907,-56.2926,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:139:69,70:69:2448:70:2512:-184.489,0,-178.73	0/1:92:47,44:47:1666:44:1564:-113.32,0,-122.512	0/1:73:41,32:41:1451:32:1148:-81.6546,0,-108.91	0/1:89:44,45:44:1561:45:1620:-119.298,0,-113.988	0/1:134:58,76:58:2084:76:2723:-204.974,0,-147.492	1/1:235:2,233:2:72:233:8360:-745.567,-63.9053,0	1/1:192:0,192:0:0:192:6860:-617.468,-57.7978,0	0/1:189:107,82:107:3824:82:2932:-207.22,0,-287.463	0/1:153:68,85:68:2435:85:3022:-226.151,0,-173.342	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:130:0,129:0:0:129:4614:-415.21,-38.8329,0	1/1:33:0,33:0:0:33:1160:-104.704,-9.93399,0	0/1:18:6,12:6:216:12:423:-32.9865,0,-14.372	0/1:158:84,74:84:2976:74:2626:-189.022,0,-220.509	1/1:53:0,53:0:0:53:1891:-170.468,-15.9546,0	0/1:8:5,3:5:171:3:108:-7.66693,0,-13.3172	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:107:45,62:45:1597:62:2224:-168.196,0,-111.808	1/1:116:0,116:0:0:116:4138:-372.585,-34.9195,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	1/1:336:0,336:0:0:336:12068:-1085.96,-101.146,0	1/1:258:0,258:0:0:258:9223:-830.038,-77.6657,0	1/1:66:0,66:0:0:66:2350:-211.756,-19.868,0	1/1:88:0,88:0:0:88:3143:-283.083,-26.4906,0	1/1:184:0,184:0:0:184:6517:-586.612,-55.3895,0	1/1:107:2,105:2:72:105:3768:-332.482,-25.3735,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:69:0,69:0:0:69:2475:-223.003,-20.7711,0	1/1:111:2,109:2:72:109:3895:-343.907,-26.5776,0	0/1:16:7,9:7:252:9:313:-23.6886,0,-18.2125	1/1:156:0,156:0:0:156:5583:-502.566,-46.9607,0	0/1:105:56,49:56:2000:49:1743:-125.544,0,-148.666	0/1:215:99,116:99:3502:116:4148:-308.782,0,-250.669	1/1:197:0,197:0:0:197:7025:-632.266,-59.3029,0	1/1:69:1,68:1:36:68:2432:-215.537,-17.1728,0	1/1:132:0,132:0:0:132:4678:-421.182,-39.736,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:136:3,133:3:108:133:4772:-419.561,-30.8649,0	1/1:75:0,75:0:0:75:2670:-240.545,-22.5773,0	1/1:188:1,187:1:36:187:6670:-596.78,-52.9954,0	1/1:109:0,109:0:0:109:3885:-349.845,-32.8123,0	1/1:62:0,62:0:0:62:2219:-199.974,-18.6639,0	0/1:116:58,58:58:2080:58:2051:-149.941,0,-152.551	1/1:169:0,169:0:0:169:6005:-540.559,-50.8741,0	0/1:52:27,25:27:949:25:900:-65.6675,0,-70.0692	1/1:79:0,79:0:0:79:2794:-251.665,-23.7814,0	1/1:66:0,66:0:0:66:2360:-212.653,-19.868,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	0/1:69:40,29:40:1413:29:1026:-71.88,0,-106.694	0/1:63:40,23:40:1425:23:824:-55.5184,0,-109.581	1/1:116:0,116:0:0:116:4140:-372.782,-34.9195,0	1/1:103:0,103:0:0:103:3657:-329.335,-31.0061,0
chr06	8011263	.	G	A	124546	PASS	AB=0.52646;ABP=18.5239;AC=144;AF=0.765957;AN=188;AO=5746;CIGAR=1X;DP=6968;DPB=6968;DPRA=37.4516;EPP=12480.3;EPPR=2650.04;GTI=7;LEN=1;MEANALT=1.03226;MQM=59.9718;MQMR=59.9655;NS=94;NUMALT=1;ODDS=0.441068;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205523;QR=43458;RO=1219;RPL=0;RPP=12480.3;RPPR=2641.36;RPR=5746;RUN=1;SAF=0;SAP=12480.3;SAR=5746;SRF=1;SRP=2641.36;SRR=1218;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:18,21:18:636:21:740:-55.1832,0,-45.8279	1/1:59:2,57:2:63:57:2052:-178.968,-11.7776,0	0/1:123:57,65:57:2031:65:2336:-173.512,0,-146.075	1/1:183:0,183:0:0:183:6568:-591.199,-55.0885,0	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:88:0,88:0:0:88:3164:-284.983,-26.4906,0	0/1:57:23,34:23:803:34:1224:-93.3083,0,-55.4297	0/1:59:37,22:37:1332:22:792:-53.8449,0,-102.422	0/1:56:28,28:28:1000:28:1000:-73.4577,0,-73.4577	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	0/1:70:32,38:32:1140:38:1368:-102.243,0,-81.8371	0/1:42:22,20:22:780:20:716:-52.1245,0,-57.8798	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	0/1:44:22,22:22:779:22:762:-55.6497,0,-57.1867	0/1:26:13,13:13:464:13:468:-34.6329,0,-34.2707	1/1:24:0,24:0:0:24:855:-77.2702,-7.22472,0	1/1:28:1,27:1:36:27:972:-84.1996,-4.83057,0	1/1:139:0,139:0:0:139:4991:-449.335,-41.8432,0	0/1:125:53,72:53:1891:72:2588:-195.54,0,-132.839	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	0/1:80:48,32:48:1720:32:1148:-79.5474,0,-131.003	0/1:57:37,20:37:1312:20:716:-47.609,0,-100.032	0/1:64:16,48:16:572:48:1720:-135.82,0,-32.5475	1/1:287:0,286:0:0:286:10214:-918.975,-86.0946,0	1/1:190:0,190:0:0:190:6774:-609.733,-57.1957,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:212:98,114:98:3524:114:4075:-303.117,0,-253.55	0/1:85:22,63:22:788:63:2245:-176.724,0,-45.6572	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:207:97,110:97:3457:110:3936:-292.119,0,-249.028	1/1:74:0,74:0:0:74:2643:-238.116,-22.2762,0	0/1:32:20,12:20:712:12:428:-29.2258,0,-54.7737	0/1:6:1,5:1:36:5:171:-13.9193,0,-1.79209	1/1:134:1,133:1:36:133:4720:-421.357,-36.7397,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:106:45,61:45:1601:61:2171:-163.745,0,-112.469	0/1:45:22,23:22:788:23:828:-61.2978,0,-57.6984	0/1:54:27,27:27:949:27:972:-71.5423,0,-69.4672	0/1:89:43,46:43:1535:46:1648:-121.817,0,-111.651	0/1:80:39,41:39:1396:41:1472:-108.694,0,-101.857	1/1:140:0,140:0:0:140:4958:-445.196,-42.1442,0	1/1:72:0,72:0:0:72:2573:-231.817,-21.6742,0	0/1:80:39,41:39:1404:41:1472:-108.694,0,-102.577	0/1:71:35,36:35:1256:36:1288:-94.8505,0,-91.9722	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:103:0,103:0:0:103:3691:-332.163,-31.0061,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:135:51,84:51:1768:84:2999:-229.502,0,-118.759	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:63:29,34:29:1036:34:1224:-91.5022,0,-74.589	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:260:0,260:0:0:260:9268:-834.089,-78.2678,0	1/1:159:1,158:1:36:158:5672:-506.999,-44.2655,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:51:0,50:0:0:50:1799:-161.832,-15.0515,0	1/1:160:1,159:1:36:159:5688:-508.438,-44.5665,0	1/1:151:0,151:0:0:151:5424:-488.287,-45.4555,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	1/1:104:0,104:0:0:104:3692:-332.483,-31.3071,0	0/1:86:39,47:39:1391:47:1680:-125.599,0,-99.5963	0/1:54:27,27:27:968:27:960:-70.4607,0,-71.1817	1/1:146:0,146:0:0:146:5238:-471.556,-43.9504,0	1/1:38:1,37:1:36:37:1321:-115.593,-7.84087,0	1/1:92:0,92:0:0:92:3277:-295.15,-27.6948,0	0/1:5:2,3:2:72:3:99:-7.73143,0,-5.33157	1/1:101:1,100:1:36:100:3566:-317.547,-26.8058,0	1/1:91:0,91:0:0:91:3260:-293.621,-27.3937,0	1/1:164:0,164:0:0:164:5852:-526.79,-49.3689,0	1/1:71:1,70:1:36:70:2507:-222.284,-17.7749,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	0/1:57:31,26:31:1090:26:936:-67.4008,0,-81.2492	1/1:117:1,116:1:36:116:4160:-370.984,-31.6222,0	0/1:19:7,12:7:252:12:428:-33.1392,0,-17.3094	1/1:67:0,67:0:0:67:2379:-214.368,-20.169,0	1/1:61:0,61:0:0:61:2181:-196.554,-18.3628,0	1/1:26:0,26:0:0:26:931:-84.1088,-7.82678,0	0/1:40:19,21:19:676:21:737:-54.6094,0,-49.1268	0/1:85:55,30:55:1972:30:1076:-71.5653,0,-152.167	1/1:193:0,193:0:0:193:6899:-620.879,-58.0988,0	1/1:102:0,102:0:0:102:3659:-329.512,-30.7051,0
chr06	8489319	.	A	G	34940.5	PASS	AB=0.578179;ABP=141.198;AC=46;AF=0.244681;AN=188;AO=1518;CIGAR=1X;DP=5370;DPB=5370;DPRA=1.12407;EPP=174.262;EPPR=49.768;GTI=2;LEN=1;MEANALT=1;MQM=59.9651;MQMR=59.993;NS=94;NUMALT=1;ODDS=2.77733;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54164;QR=138111;RO=3852;RPL=586;RPP=174.262;RPPR=49.768;RPR=932;RUN=1;SAF=0;SAP=3299.31;SAR=1518;SRF=0;SRP=8367.52;SRR=3852;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:18,37:18:648:37:1313:-101.913,0,-42.0952	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:76:33,43:33:1188:43:1531:-115.205,0,-84.3503	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/1:40:13,27:13:468:27:968:-75.3962,0,-30.4184	0/1:34:11,23:11:392:23:805:-62.5325,0,-25.385	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:71:28,43:28:1008:43:1548:-118.24,0,-69.6632	0/1:50:23,27:23:828:27:958:-71.481,0,-59.7926	0/1:35:12,23:12:432:23:824:-63.9473,0,-28.6851	0/1:53:24,29:24:856:29:1044:-78.3202,0,-61.4065	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:72:36,36:36:1288:36:1292:-94.9096,0,-94.5494	0/1:93:47,46:47:1692:46:1652:-120.973,0,-124.571	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.999	0/1:55:22,33:22:792:33:1143:-86.6162,0,-55.049	0/1:73:39,34:39:1384:34:1220:-88.1316,0,-102.884	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:74:35,39:35:1260:39:1391:-103.213,0,-91.4293	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:46:21,25:21:756:25:896:-67.113,0,-54.5198	0/1:104:49,55:49:1737:55:1972:-146.318,0,-125.301	0/1:56:20,36:20:720:36:1292:-99.7261,0,-48.2711	0/0:159:159,0:159:5696:0:0:0,-47.8638,-512.758	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:94:31,63:31:1112:63:2252:-174.646,0,-72.0945	0/1:93:21,72:21:756:72:2563:-202.922,0,-40.3714	0/0:33:31,2:31:1116:2:72:0,-3.09727,-93.915	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:232:104,128:104:3727:128:4578:-342.346,0,-265.791	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:70:36,34:36:1283:34:1205:-87.6818,0,-94.7005	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:65:22,43:22:788:43:1536:-118.966,0,-51.6778	0/1:76:39,37:39:1404:37:1328:-96.944,0,-103.781	0/1:69:33,36:33:1180:36:1283:-95.0016,0,-85.737	0/1:79:29,50:29:1017:50:1779:-136.611,0,-68.0584	0/1:50:25,25:25:892:25:870:-63.5631,0,-65.5482	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:60:13,47:13:468:47:1664:-131.983,0,-24.3978	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:21:5,16:5:180:16:576:-45.8534,0,-10.2304	0/1:83:25,58:25:900:58:2075:-162.034,0,-56.3355	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:58:19,39:19:684:39:1374:-106.498,0,-44.4306	0/0:145:145,0:145:5207:0:0:0,-43.6493,-468.766	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:88:82,6:82:2936:6:216:0,-6.70013,-244.684	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.322	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:101:101,0:101:3615:0:0:0,-30.404,-325.552	0/1:31:6,25:6:216:25:900:-71.9891,0,-10.4586	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:46:27,19:27:968:19:684:-48.0429,0,-73.59	0/1:105:47,58:47:1684:58:2076:-155.501,0,-120.239	0/0:39:38,1:38:1360:1:36:0,-8.14189,-119.102	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/0:122:122,0:122:4388:0:0:0,-36.7257,-395.091	0/0:76:76,0:76:2723:0:0:0,-22.8783,-245.312	0/1:69:33,36:33:1184:36:1280:-94.7322,0,-86.0972	0/0:147:145,2:145:5188:2:72:0,-37.4147,-460.221	0/1:41:21,20:21:756:20:720:-52.7865,0,-56.025	0/0:101:100,1:100:3592:1:36:0,-26.8058,-319.887	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/0:50:50,0:50:1772:0:0:0,-15.0515,-159.76	0/1:108:64,44:64:2285:44:1575:-109.523,0,-173.399	0/1:83:29,54:29:1036:54:1913:-147.457,0,-68.5684	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532
chr06	8512068	.	A	T	46279.2	PASS	AB=0.367268;ABP=240.507;AC=141;AF=0.75;AN=188;AO=1790;CIGAR=1X;DP=2779;DPB=2779;DPRA=0;EPP=3.08794;EPPR=332.513;GTI=4;LEN=1;MEANALT=1.02128;MQM=59.7408;MQMR=59.999;NS=94;NUMALT=1;ODDS=0.135449;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62949;QR=35230;RO=987;RPL=1759;RPP=3625.35;RPPR=1992.76;RPR=31;RUN=1;SAF=860;SAP=8.95455;SAR=930;SRF=284;SRP=389.257;SRR=703;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	1/1:15:0,15:0:0:15:525:-47.5756,-4.51545,0	0/1:16:11,5:11:381:5:180:-11.7356,0,-29.8042	1/1:14:0,14:0:0:14:494:-44.7924,-4.21442,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:5:2,3:2:72:3:93:-7.17158,0,-5.33157	1/1:16:0,16:0:0:16:563:-50.9992,-4.81648,0	0/1:20:12,8:12:428:8:284:-19.8826,0,-32.8382	0/1:23:13,10:13:460:10:360:-25.8206,0,-34.8117	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:126:77,49:77:2756:49:1705:-115.785,0,-210.352	1/1:59:0,59:0:0:59:2058:-185.33,-17.7608,0	0/1:40:20,20:20:716:20:703:-51.5515,0,-52.7265	0/1:45:31,14:31:1108:14:504:-32.1517,0,-86.4846	1/1:32:2,30:2:72:30:1064:-89.2346,-2.79624,0	0/1:39:25,14:25:883:14:500:-33.596,0,-68.0473	0/1:66:37,29:37:1324:29:1012:-71.5024,0,-99.5941	1/1:33:0,33:0:0:33:1167:-105.336,-9.93399,0	1/1:78:0,78:0:0:78:2669:-240.359,-23.4803,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:23:0,23:0:0:23:797:-72.0459,-6.92369,0	0/1:16:8,8:8:288:8:280:-20.7228,0,-21.4509	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:50:30,20:30:1057:20:704:-48.633,0,-80.3875	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:30:22,8:22:784:8:269:-15.5052,0,-61.853	0/1:64:40,24:40:1432:24:814:-54.2162,0,-109.912	1/1:18:0,18:0:0:18:632:-57.2068,-5.41854,0	0/1:64:36,28:36:1296:28:1008:-71.7704,0,-97.678	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:164:106,58:106:3787:58:2055:-135.844,0,-291.66	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:55:0,55:0:0:55:1936:-174.358,-16.5567,0	0/1:21:10,11:10:360:11:388:-28.9357,0,-26.4227	0/1:34:21,13:21:756:13:468:-32.2246,0,-58.1322	0/1:41:26,14:26:927:14:500:-32.971,0,-71.3849	0/1:12:8,4:8:288:4:135:-8.87015,0,-22.655	0/1:8:4,4:4:140:4:135:-10.074,0,-10.5363	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	0/1:5:1,4:1:36:4:135:-10.9774,0,-2.09312	0/1:23:12,11:12:423:11:392:-28.6964,0,-31.4814	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/1:34:26,8:26:928:8:258:-13.2988,0,-73.6032	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:13:7,6:7:252:6:201:-14.5037,0,-19.1156	0/1:16:10,6:10:356:6:212:-14.6083,0,-27.5648	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:15:9,6:9:320:6:212:-14.9093,0,-24.6269	0/1:20:7,13:7:248:13:464:-36.0719,0,-16.6436	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:53:1,52:1:36:52:1860:-164.08,-12.3563,0	0/1:18:13,5:13:468:5:176:-10.7665,0,-37.0411	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:15:1,14:1:36:14:482:-40.1077,-0.917175,0	1/1:8:0,8:0:0:8:288:-25.9943,-2.40824,0	1/1:70:0,70:0:0:70:2446:-220.392,-21.0721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:49:0,49:0:0:49:1707:-153.911,-14.7505,0	0/1:31:13,18:13:464:18:599:-44.8904,0,-32.7656	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	0/1:28:15,13:15:532:13:445:-31.9459,0,-39.7842	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:66:48,18:48:1728:18:606:-34.9866,0,-135.937	1/1:16:0,16:0:0:16:560:-50.7274,-4.81648,0	1/1:13:0,13:0:0:13:455:-41.2681,-3.91339,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:39:0,39:0:0:39:1371:-123.683,-11.7402,0	1/1:39:0,39:0:0:39:1396:-125.934,-11.7402,0	0/1:42:25,17:25:891:17:593:-41.0515,0,-67.8655	1/1:77:2,75:2:72:75:2684:-234.96,-16.3426,0	0/1:29:16,13:16:555:13:457:-32.7328,0,-41.5462	1/1:59:0,59:0:0:59:2046:-184.381,-17.7608,0	1/1:52:1,51:1:36:51:1792:-157.954,-12.0557,0	1/1:93:0,93:0:0:93:3200:-288.022,-27.9958,0	0/1:158:134,23:134:4766:23:824:-26.9001,0,-381.515	0/1:36:27,9:27:968:9:324:-18.6688,0,-76.6003	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0
chr06	8512080	.	T	A	50977.3	PASS	AB=0.39157;ABP=170.182;AC=141;AF=0.75;AN=188;AO=1961;CIGAR=1X;DP=2964;DPB=2964;DPRA=0;EPP=66.262;EPPR=455.164;GTI=3;LEN=1;MEANALT=1;MQM=59.639;MQMR=59.999;NS=94;NUMALT=1;ODDS=0.197156;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69855;QR=35119;RO=1003;RPL=1961;RPP=4261.27;RPPR=2146.39;RPR=0;RUN=1;SAF=861;SAP=66.262;SAR=1100;SRF=269;SRP=471.133;SRR=734;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:7,7:7:240:7:248:-18.4498,0,-17.7202	1/1:15:0,15:0:0:15:528:-47.8495,-4.51545,0	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5027	1/1:13:1,12:1:21:12:428:-36.7589,-1.81344,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:6:3,3:3:104:3:104:-7.89663,0,-7.89663	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:22:12,10:12:428:10:360:-26.1212,0,-32.2361	0/1:23:14,9:14:496:9:320:-22.2187,0,-38.0506	0/1:11:6,5:6:208:5:180:-13.2407,0,-15.7478	0/1:139:79,60:79:2770:60:2143:-150.908,0,-207.698	1/1:61:0,61:0:0:61:2150:-193.448,-18.3628,0	0/1:42:20,22:20:704:22:792:-58.9624,0,-51.0413	0/1:45:30,15:30:1034:15:524:-33.9433,0,-79.8209	1/1:33:0,33:0:0:33:1172:-105.785,-9.93399,0	0/1:41:25,16:25:861:16:568:-39.1096,0,-65.4603	0/1:67:34,33:34:1175:33:1184:-86.6993,0,-85.8844	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:99:0,99:0:0:99:3522:-316.319,-29.802,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:13:5,8:5:176:8:284:-21.99,0,-12.2716	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:3,5:3:100:5:180:-14.1438,0,-6.9222	0/1:18:13,5:13:444:5:176:-10.7665,0,-34.8683	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:25:1,24:1:32:24:839:-72.628,-4.32644,0	0/1:14:7,7:7:232:7:252:-18.8145,0,-16.9907	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:60:31,29:31:1097:29:1044:-75.9426,0,-80.9762	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:31:21,10:21:736:10:351:-22.5947,0,-57.2305	0/1:70:42,28:42:1461:28:1000:-68.377,0,-110.71	1/1:20:0,20:0:0:20:711:-64.3156,-6.0206,0	0/1:63:36,27:36:1267:27:954:-67.2091,0,-95.367	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:172:106,66:106:3777:66:2358:-160.693,0,-288.352	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:65:0,65:0:0:65:2319:-208.861,-19.567,0	0/1:22:12,10:12:415:10:352:-25.3955,0,-31.0576	0/1:34:21,13:21:731:13:468:-32.2246,0,-55.8754	0/1:44:28,16:28:966:16:572:-38.5666,0,-74.0044	0/1:12:7,5:7:244:5:176:-12.5727,0,-18.6871	0/1:7:3,4:3:104:4:144:-11.204,0,-7.5956	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/1:24:13,11:13:449:11:396:-28.758,0,-33.5128	0/1:13:10,3:10:333:3:108:-6.16178,0,-26.3783	0/1:37:29,8:29:1028:8:288:-15.1293,0,-81.6949	1/1:12:0,12:0:0:12:419:-37.4101,-3.61236,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:14:9,5:9:312:5:180:-12.3376,0,-24.2009	0/1:17:10,7:10:343:7:252:-17.9114,0,-26.0831	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/1:22:6,16:6:197:16:572:-45.0545,0,-11.4287	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	1/1:54:1,53:1:32:53:1887:-166.907,-13.0563,0	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:6:0,6:0:0:6:216:-19.7881,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:17:1,16:1:36:16:569:-47.7136,-1.51924,0	1/1:10:0,10:0:0:10:347:-31.5436,-3.0103,0	1/1:80:0,80:0:0:80:2858:-257.453,-24.0824,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:55:0,55:0:0:55:1960:-176.662,-16.5567,0	0/1:36:14,22:14:466:22:784:-60.0446,0,-31.4188	1/1:9:0,9:0:0:9:305:-27.7772,-2.70927,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:26:12,14:12:424:14:500:-37.5078,0,-30.6696	1/1:17:0,17:0:0:17:591:-53.5153,-5.11751,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:76:51,25:51:1793:25:900:-58.4346,0,-138.772	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:13:0,13:0:0:13:455:-41.2681,-3.91339,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:43:0,43:0:0:43:1525:-137.527,-12.9443,0	1/1:40:0,40:0:0:40:1417:-127.821,-12.0412,0	0/1:41:24,17:24:804:17:589:-40.9915,0,-60.3267	1/1:83:2,81:2:72:81:2895:-253.94,-18.1488,0	0/1:32:18,14:18:644:14:504:-36.0651,0,-48.6576	1/1:60:0,60:0:0:60:2083:-187.357,-18.0618,0	1/1:57:1,56:1:36:56:2012:-177.747,-13.5609,0	1/1:100:0,100:0:0:100:3577:-321.41,-30.103,0	0/1:168:142,26:142:5011:26:932:-33.5974,0,-400.572	0/1:35:26,9:26:928:9:322:-18.7882,0,-73.3022	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:61:0,61:0:0:61:2174:-195.926,-18.3628,0
chr06	8514807	.	T	C	170636	PASS	AB=0.507277;ABP=4.96972;AC=142;AF=0.755319;AN=188;AO=7961;CIGAR=1X;DP=10076;DPB=10076;DPRA=0;EPP=17272.7;EPPR=4593.5;GTI=2;LEN=1;MEANALT=1.01064;MQM=59.9917;MQMR=60;NS=94;NUMALT=1;ODDS=1.88911;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284649;QR=75572;RO=2114;RPL=2;RPP=17272.7;RPPR=4593.5;RPR=7959;RUN=1;SAF=0;SAP=17290.1;SAR=7961;SRF=0;SRP=4593.5;SRR=2114;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:40,31:40:1428:31:1116:-79.3786,0,-107.444	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:138:57,81:57:2036:81:2900:-219.694,0,-141.97	1/1:256:0,256:0:0:256:9175:-825.718,-77.0637,0	0/1:56:23,33:23:820:33:1173:-89.0179,0,-57.2648	0/1:74:27,47:27:972:47:1674:-128.669,0,-65.5217	1/1:149:0,149:0:0:149:5317:-478.665,-44.8535,0	0/1:135:63,72:63:2264:72:2584:-192.17,0,-163.383	0/1:108:40,68:40:1432:68:2448:-188.063,0,-96.6664	0/1:146:80,66:80:2868:66:2347:-167.538,0,-214.407	0/1:49:16,33:16:576:33:1180:-91.7576,0,-37.4245	1/1:122:0,122:0:0:122:4356:-392.216,-36.7257,0	0/1:77:45,32:45:1616:32:1152:-80.8108,0,-122.551	0/1:73:42,31:42:1504:31:1116:-78.7765,0,-113.679	1/1:91:1,90:1:36:90:3203:-284.895,-23.7955,0	0/1:78:40,38:40:1421:38:1368:-99.9405,0,-104.705	0/1:53:22,31:22:784:31:1112:-84.4368,0,-54.9293	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:243:0,243:0:0:243:8694:-782.449,-73.1503,0	0/1:207:104,103:104:3724:103:3704:-271.247,0,-273.048	1/1:110:0,110:0:0:110:3921:-353.083,-33.1133,0	0/1:183:91,92:91:3268:92:3272:-239.611,0,-239.251	0/1:120:65,55:65:2324:55:1965:-141,0,-173.297	0/1:75:27,48:27:964:48:1720:-132.508,0,-64.4996	1/1:254:1,253:1:36:253:9036:-809.618,-72.8633,0	1/1:156:0,156:0:0:156:5591:-503.311,-46.9607,0	1/1:34:1,33:1:36:33:1181:-102.999,-6.63675,0	0/1:227:113,114:113:4008:114:4070:-298.151,0,-292.577	0/1:251:127,124:127:4541:124:4417:-322.142,0,-333.297	1/1:169:0,169:0:0:169:6029:-542.712,-50.8741,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:25:0,25:0:0:25:871:-78.7055,-7.52575,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	0/1:205:101,104:101:3616:104:3723:-273.559,0,-263.935	1/1:171:0,171:0:0:171:6122:-551.078,-51.4761,0	0/1:41:26,15:26:928:15:540:-36.5943,0,-71.496	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:153:0,153:0:0:153:5473:-492.696,-46.0576,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:198:100,98:100:3592:98:3504:-255.966,0,-263.882	0/1:55:30,25:30:1068:25:896:-64.4037,0,-79.8754	0/1:61:21,40:21:752:40:1405:-108.379,0,-49.6434	0/1:141:65,76:65:2320:76:2724:-202.958,0,-166.615	0/1:157:60,97:60:2160:97:3484:-266.509,0,-147.405	1/1:181:2,179:2:72:179:6417:-570.773,-47.6497,0	1/1:146:0,146:0:0:146:5236:-471.372,-43.9504,0	0/1:129:64,65:64:2292:65:2339:-171.936,0,-167.709	0/1:181:104,77:104:3693:77:2768:-194.874,0,-278.087	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	1/1:125:0,125:0:0:125:4459:-401.481,-37.6288,0	1/1:58:0,58:0:0:58:2057:-185.4,-17.4597,0	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:166:75,91:75:2676:91:3255:-243.199,0,-191.115	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	0/1:25:8,17:8:284:17:612:-47.8877,0,-18.3776	0/1:14:10,4:10:360:4:129:-7.71324,0,-28.5299	0/1:112:52,60:52:1835:60:2137:-158.881,0,-131.715	1/1:100:2,98:2:72:98:3499:-308.283,-23.2663,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:211:0,211:0:0:211:7546:-679.179,-63.5173,0	1/1:192:1,191:1:36:191:6853:-613.237,-54.1995,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	1/1:86:0,86:0:0:86:3056:-275.269,-25.8886,0	1/1:223:3,220:3:108:220:7853:-696.721,-57.0545,0	1/1:180:1,178:1:36:178:6323:-565.564,-50.6459,0	1/1:39:0,39:0:0:39:1389:-125.307,-11.7402,0	1/1:70:0,70:0:0:70:2509:-226.062,-21.0721,0	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	0/1:34:14,20:14:500:20:720:-54.8938,0,-35.1012	1/1:122:0,122:0:0:122:4388:-395.091,-36.7257,0	0/1:94:58,36:58:2072:36:1288:-87.9268,0,-158.454	0/1:139:80,59:80:2865:59:2116:-148.866,0,-216.242	1/1:217:0,217:0:0:217:7724:-695.192,-65.3235,0	1/1:123:1,122:1:32:122:4376:-390.813,-33.8274,0	1/1:136:0,136:0:0:136:4873:-438.449,-40.9401,0	0/1:37:19,18:19:676:18:639:-46.7001,0,-50.0299	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	1/1:140:0,140:0:0:140:4977:-448.078,-42.1442,0	1/1:305:0,305:0:0:305:10948:-985.213,-91.8142,0	1/1:58:0,58:0:0:58:2046:-184.408,-17.4597,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:65:31,34:31:1112:34:1209:-89.548,0,-80.8244	1/1:160:2,158:2:72:158:5617:-498.818,-41.3281,0	0/1:28:15,13:15:536:13:451:-32.491,0,-40.146	1/1:102:0,102:0:0:102:3656:-329.244,-30.7051,0	1/1:96:0,96:0:0:96:3440:-309.813,-28.8989,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:97:42,55:42:1493:55:1969:-148.285,0,-105.463	0/1:92:62,30:62:2220:30:1080:-69.8185,0,-172.37	1/1:160:0,160:0:0:160:5723:-515.187,-48.1648,0	1/1:116:0,116:0:0:116:4164:-374.941,-34.9195,0
chr06	8666154	.	C	A	145745	PASS	AB=0.55538;ABP=70.3534;AC=140;AF=0.76087;AN=184;AO=6696;CIGAR=1X;DP=7832;DPB=7832;DPRA=86.0549;EPP=14534.5;EPPR=2467.63;GTI=7;LEN=1;MEANALT=1.01099;MQM=59.7295;MQMR=59.9718;NS=92;NUMALT=1;ODDS=1.63527;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238909;QR=40181;RO=1135;RPL=6696;RPP=14543.2;RPPR=2467.63;RPR=0;RUN=1;SAF=6695;SAP=14534.5;SAR=1;SRF=1135;SRP=2467.63;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:5,16:5:180:16:572:-45.4875,0,-10.2304	1/1:109:0,109:0:0:109:3866:-348.121,-32.8123,0	0/1:146:63,83:63:2244:83:2971:-223.557,0,-158.273	1/1:245:0,245:0:0:245:8757:-788.09,-73.7524,0	0/1:84:30,54:30:1040:54:1944:-149.946,0,-68.62	0/1:43:24,19:24:844:19:684:-48.9427,0,-63.3346	1/1:110:0,110:0:0:110:3928:-353.712,-33.1133,0	0/1:116:45,71:45:1593:71:2540:-193.871,0,-108.739	0/1:41:22,19:22:767:19:675:-48.7314,0,-57.0072	0/1:65:29,36:29:1028:36:1292:-97.0121,0,-73.259	0/1:23:8,15:8:279:15:532:-41.287,0,-18.5238	1/1:42:0,42:0:0:42:1508:-136.011,-12.6433,0	0/1:28:16,12:16:559:12:428:-30.43,0,-42.2088	0/1:36:15,21:15:536:21:756:-57.5255,0,-37.7377	1/1:35:0,35:0:0:35:1256:-113.343,-10.5361,0	0/1:39:17,22:17:604:22:792:-59.8655,0,-42.9504	0/1:36:18,18:18:648:18:648:-47.8047,0,-47.8139	1/1:44:0,44:0:0:44:1580:-142.488,-13.2453,0	1/1:12:0,12:0:0:12:420:-38.134,-3.61236,0	1/1:233:0,233:0:0:233:8297:-745.989,-70.14,0	0/1:93:39,54:39:1366:54:1919:-144.986,0,-95.2411	1/1:127:0,127:0:0:127:4557:-410.288,-38.2308,0	0/1:17:5,12:5:168:12:428:-33.7413,0,-10.3334	0/1:53:21,32:21:744:32:1148:-87.6706,0,-51.3297	0/1:44:20,24:20:704:24:860:-64.4673,0,-50.4392	1/1:326:2,324:2:72:324:11569:-1034.23,-91.2991,0	1/1:171:0,171:0:0:171:6090:-548.048,-51.4761,0	1/1:23:0,23:0:0:23:824:-74.4741,-6.92369,0	0/1:233:118,115:118:4185:115:4094:-298.499,0,-306.693	0/1:140:52,88:52:1860:88:3142:-240.848,0,-125.535	1/1:97:0,97:0:0:97:3450:-310.699,-29.1999,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	0/1:9:5,4:5:180:4:136:-9.86627,0,-13.8428	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:132:68,64:68:2419:64:2288:-166.441,0,-178.23	1/1:170:0,170:0:0:170:6049:-544.348,-51.1751,0	0/1:27:14,13:14:496:13:468:-34.3251,0,-36.8465	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	1/1:244:0,244:0:0:244:8718:-783.423,-73.4513,0	1/1:17:0,17:0:0:17:612:-55.4006,-5.11751,0	0/1:139:72,67:72:2549:67:2400:-174.336,0,-187.817	0/1:29:12,17:12:432:17:597:-45.2361,0,-30.4913	0/1:30:13,17:13:464:17:612:-46.3802,0,-33.0666	0/1:68:28,40:28:982:40:1405:-106.275,0,-68.2216	0/1:101:46,55:46:1625:55:1964:-146.625,0,-116.133	1/1:192:0,192:0:0:192:6788:-610.973,-57.7978,0	1/1:139:0,139:0:0:139:4957:-446.165,-41.8432,0	0/1:118:46,72:46:1640:72:2561:-195.208,0,-112.367	0/1:94:41,53:41:1432:53:1885:-141.629,0,-100.848	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:374:0,374:0:0:374:13349:-1201.06,-112.585,0	1/1:23:0,23:0:0:23:820:-73.6281,-6.92369,0	0/1:8:2,6:2:72:6:207:-16.5587,0,-4.42848	0/1:132:60,72:60:2132:72:2578:-192.527,0,-152.413	1/1:31:0,31:0:0:31:1103:-99.5751,-9.33193,0	0/1:7:4,3:4:144:3:108:-7.96702,0,-11.2064	0/1:22:7,15:7:248:15:540:-42.3139,0,-16.0415	0/1:38:19,19:19:680:19:669:-49.0933,0,-50.09	1/1:119:1,118:1:36:118:4206:-375.113,-32.2243,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:234:0,234:0:0:234:8351:-751.567,-70.441,0	1/1:208:4,204:4:144:204:7282:-640.644,-49.3006,0	1/1:61:0,61:0:0:61:2192:-197.536,-18.3628,0	1/1:106:0,105:0:0:105:3743:-336.679,-31.6082,0	1/1:152:0,152:0:0:152:5381:-483.915,-45.7566,0	1/1:114:0,114:0:0:114:4033:-363.137,-34.3174,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:48:0,48:0:0:48:1716:-154.718,-14.4494,0	1/1:59:0,59:0:0:59:2120:-191.067,-17.7608,0	0/1:21:9,12:9:315:12:428:-32.5372,0,-22.3656	1/1:110:0,110:0:0:110:3927:-353.617,-33.1133,0	0/1:40:21,19:21:752:19:684:-49.8041,0,-55.9651	0/1:98:34,64:34:1202:64:2292:-177.031,0,-78.9833	1/1:213:0,213:0:0:213:7609:-684.835,-64.1194,0	1/1:98:0,98:0:0:98:3497:-314.919,-29.5009,0	1/1:98:1,97:1:36:97:3461:-308.095,-25.9027,0	.:.:.:.:.:.:.:.	1/1:139:1,138:1:36:138:4928:-440.03,-38.2449,0	1/1:123:0,123:0:0:123:4407:-396.776,-37.0267,0	1/1:184:0,184:0:0:184:6556:-590.094,-55.3895,0	1/1:75:0,75:0:0:75:2678:-241.263,-22.5773,0	1/1:32:0,32:0:0:32:1152:-103.988,-9.63296,0	0/1:43:24,19:24:832:19:680:-48.5786,0,-62.2473	1/1:84:1,83:1:36:83:2980:-264.824,-21.6882,0	0/1:25:6,19:6:208:19:676:-53.6389,0,-11.5333	1/1:39:0,39:0:0:39:1400:-126.292,-11.7402,0	1/1:43:0,43:0:0:43:1532:-138.166,-12.9443,0	1/1:27:0,27:0:0:27:964:-87.0722,-8.12781,0	0/1:58:27,31:27:964:31:1116:-83.2781,0,-69.6171	0/1:23:17,6:17:600:6:216:-12.8668,0,-47.4055	1/1:96:0,96:0:0:96:3389:-305.222,-28.8989,0	1/1:48:0,48:0:0:48:1716:-154.722,-14.4494,0
chr06	8792420	.	G	A	38974	PASS	AB=0.48873;ABP=8.24754;AC=45;AF=0.239362;AN=188;AO=2347;CIGAR=1X;DP=11781;DPB=11781;DPRA=1.04619;EPP=5047.47;EPPR=20073.8;GTI=2;LEN=1;MEANALT=1.01786;MQM=59.9719;MQMR=59.9865;NS=94;NUMALT=1;ODDS=1.31382;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83898;QR=335453;RO=9430;RPL=2341;RPP=5047.47;RPPR=20073.8;RPR=6;RUN=1;SAF=0;SAP=5099.46;SAR=2347;SRF=0;SRP=20480;SRR=9430;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:30,23:30:1072:23:828:-58.8895,0,-80.8379	0/0:93:93,0:93:3311:0:0:0,-27.9958,-298.208	0/1:221:126,95:126:4469:95:3416:-241.125,0,-335.855	0/0:413:413,0:413:14698:0:0:0,-124.325,-1322.56	0/1:91:49,42:49:1735:42:1508:-108.621,0,-129.04	0/1:71:29,42:29:1022:42:1500:-113.921,0,-70.9177	0/0:85:85,0:85:3031:0:0:0,-25.5875,-272.863	0/1:234:120,114:120:4264:114:4080:-296.945,0,-313.498	0/1:104:57,47:57:2036:47:1676:-119.82,0,-152.205	0/1:133:91,42:91:3252:42:1500:-95.2576,0,-252.865	0/1:69:35,34:35:1222:34:1216:-88.9755,0,-89.511	0/0:124:124,0:124:4385:0:0:0,-37.3277,-394.827	0/1:102:47,55:47:1684:55:1963:-146.237,0,-121.142	0/1:77:39,38:39:1380:38:1364:-99.8814,0,-101.319	0/0:107:107,0:107:3824:0:0:0,-32.2102,-344.358	0/1:93:49,44:49:1743:44:1568:-113.416,0,-129.158	0/1:54:35,19:35:1252:19:684:-45.6347,0,-96.7295	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:43:43,0:43:1520:0:0:0,-12.9443,-137.093	0/0:216:216,0:216:7674:0:0:0,-65.0225,-690.699	0/1:167:75,92:75:2672:92:3300:-246.946,0,-190.454	0/0:154:154,0:154:5496:0:0:0,-46.3586,-494.769	0/1:204:105,99:105:3724:99:3526:-256.14,0,-273.952	0/1:122:58,63:58:2076:63:2264:-167.011,0,-150.326	0/1:97:37,60:37:1319:60:2149:-164.473,0,-89.8113	0/0:363:362,1:362:12922:1:36:0,-105.676,-1159.2	0/0:218:218,0:218:7778:0:0:0,-65.6245,-700.053	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.393	0/1:387:203,184:203:7239:184:6579:-475.692,0,-535.068	0/1:117:48,69:48:1712:69:2459:-186.344,0,-119.145	0/0:165:162,3:162:5757:3:104:0,-39.9671,-508.532	0/1:20:7,13:7:252:13:455:-35.2614,0,-17.0084	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:8:3,5:3:108:5:172:-13.4097,0,-7.66693	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:204:107,97:107:3772:97:3471:-251.191,0,-278.272	0/0:209:208,0:208:7398:0:0:0,-62.6142,-665.512	0/1:57:34,23:34:1204:23:824:-57.3246,0,-91.5071	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:180:179,0:179:6387:0:0:0,-53.8844,-574.561	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:192:94,98:94:3355:98:3516:-258.851,0,-244.369	0/1:94:52,42:52:1825:42:1504:-107.358,0,-136.232	0/1:83:45,38:45:1591:38:1364:-98.0752,0,-118.494	0/1:114:64,50:64:2271:50:1773:-125.534,0,-170.335	0/1:159:74,85:74:2623:85:3032:-225.247,0,-188.454	0/0:257:257,0:257:9151:0:0:0,-77.3647,-823.57	0/0:140:140,0:140:4986:0:0:0,-42.1442,-448.89	0/1:201:97,104:97:3458:104:3740:-276.291,0,-250.925	0/1:148:66,82:66:2356:82:2917:-218.212,0,-167.747	0/1:20:7,13:7:248:13:464:-36.0769,0,-16.6436	0/0:164:163,1:163:5795:1:36:0,-45.7706,-518.07	0/0:80:80,0:80:2834:0:0:0,-24.0824,-255.299	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:200:117,83:117:4184:83:2929:-203.627,0,-316.536	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.414	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:118:67,51:67:2369:51:1821:-128.649,0,-177.946	0/0:107:106,0:106:3788:0:0:0,-31.9092,-340.759	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.6223	0/0:288:287,1:287:10222:1:36:0,-83.0984,-916.313	0/0:228:221,7:221:7848:7:252:0,-45.6059,-683.28	0/0:77:75,2:75:2671:2:72:0,-16.3426,-233.799	0/0:165:165,0:165:5890:0:0:0,-49.6699,-530.197	0/0:249:248,1:248:8835:1:36:0,-71.3582,-791.544	0/0:264:264,0:264:9383:0:0:0,-79.4719,-844.443	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.986	0/0:124:124,0:124:4420:0:0:0,-37.3277,-397.974	0/0:48:48,0:48:1694:0:0:0,-14.4494,-152.745	0/1:43:13,30:13:464:30:1076:-84.2086,0,-29.1532	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/1:129:60,69:60:2132:69:2455:-182.372,0,-153.316	0/1:192:127,65:127:4511:65:2316:-150.902,0,-348.364	0/0:274:274,0:274:9763:0:0:0,-82.4822,-878.621	0/0:138:138,0:138:4924:0:0:0,-41.5421,-443.313	0/0:168:167,1:167:5972:1:36:0,-46.9748,-533.989	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3825	0/0:158:158,0:158:5642:0:0:0,-47.5627,-507.901	0/0:222:222,0:222:7869:0:0:0,-66.8287,-707.756	0/0:279:278,1:278:9882:1:36:0,-80.3891,-885.733	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.581	0/0:82:82,0:82:2887:0:0:0,-24.6845,-260.066	0/1:70:31,39:31:1095:39:1404:-105.587,0,-77.787	0/0:186:179,7:179:6335:7:248:0,-33.3274,-547.583	0/1:27:15,12:15:532:12:432:-31.0934,0,-40.0853	0/0:76:76,0:76:2723:0:0:0,-22.8783,-245.312	0/0:102:102,0:102:3609:0:0:0,-30.7051,-325.018	0/0:48:48,0:48:1693:0:0:0,-14.4494,-152.654	0/1:97:45,52:45:1583:52:1845:-137.128,0,-113.56	0/1:91:27,64:27:925:64:2296:-179.507,0,-56.1655	0/0:232:230,2:230:8193:2:72:0,-63.0022,-730.551	0/0:101:101,0:101:3569:0:0:0,-30.404,-321.42
chr06	8836981	.	A	T	160360	PASS	AB=0.478953;ABP=17.2696;AC=138;AF=0.734043;AN=188;AO=7478;CIGAR=1X;DP=9437;DPB=9437;DPRA=69.8593;EPP=16241.3;EPPR=4246.07;GTI=4;LEN=1;MEANALT=1.04444;MQM=59.8704;MQMR=59.9749;NS=94;NUMALT=1;ODDS=1.15071;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266974;QR=69511;RO=1954;RPL=0;RPP=16241.3;RPPR=4246.07;RPR=7478;RUN=1;SAF=0;SAP=16241.3;SAR=7478;SRF=0;SRP=4246.07;SRR=1954;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:16,13:16:559:13:459:-32.9142,0,-41.9077	1/1:273:0,272:0:0:272:9657:-868.695,-81.8802,0	0/1:158:98,60:98:3508:60:2152:-146.384,0,-268.368	1/1:264:0,263:0:0:263:9390:-844.435,-79.1709,0	0/1:52:20,32:20:720:32:1140:-87.2556,0,-49.4752	0/1:52:25,27:25:900:27:968:-71.7829,0,-65.6675	1/1:140:0,140:0:0:140:4982:-448.526,-42.1442,0	0/1:213:121,92:121:4298:92:3292:-232.377,0,-322.823	0/1:70:29,41:29:1031:41:1460:-110.622,0,-72.0305	0/1:92:50,42:50:1757:42:1489:-106.605,0,-130.717	0/1:47:24,23:24:847:23:820:-59.9735,0,-62.4003	1/1:76:0,76:0:0:76:2711:-244.212,-22.8783,0	0/1:66:31,35:31:1094:35:1238:-91.8549,0,-78.9003	0/1:58:27,31:27:955:31:1112:-82.9316,0,-68.8051	1/1:64:0,64:0:0:64:2291:-206.262,-19.2659,0	0/1:48:22,26:22:784:26:932:-69.7476,0,-56.4345	0/1:41:19,22:19:680:22:788:-58.344,0,-49.1869	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:36:0,36:0:0:36:1288:-116.222,-10.8371,0	1/1:247:0,247:0:0:247:8832:-794.865,-74.3544,0	0/1:121:66,55:66:2342:55:1955:-139.799,0,-174.586	1/1:118:0,118:0:0:118:4227:-379.832,-35.5215,0	0/1:101:47,54:47:1684:54:1924:-143.033,0,-121.443	0/1:139:82,57:82:2912:57:2035:-141.578,0,-220.471	0/1:60:26,34:26:911:34:1207:-90.8735,0,-64.2432	1/1:335:4,331:4:144:331:11823:-1049.48,-87.5314,0	1/1:157:0,157:0:0:157:5614:-503.843,-47.2617,0	1/1:24:0,24:0:0:24:855:-77.2669,-7.22472,0	0/1:306:159,146:159:5685:146:5224:-378.108,0,-419.594	0/1:379:188,191:188:6672:191:6826:-500.282,0,-486.469	1/1:130:1,129:1:36:129:4602:-410.746,-35.5356,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:5:0,5:0:0:5:169:-15.5415,-1.50515,0	0/1:141:67,74:67:2376:74:2648:-195.017,0,-171.633	1/1:197:1,196:1:36:196:7002:-626.643,-55.7046,0	0/1:56:24,32:24:860:32:1138:-85.8704,0,-60.8642	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	1/1:179:0,179:0:0:179:6399:-575.508,-53.8844,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:86:38,48:38:1364:48:1719:-129.104,0,-97.1712	0/1:49:26,23:26:918:23:824:-59.7328,0,-68.1848	0/1:43:20,23:20:720:23:806:-59.8689,0,-52.1845	0/1:90:50,40:50:1792:40:1427:-101.634,0,-134.47	0/1:112:57,55:57:2027:55:1964:-143.318,0,-148.987	1/1:208:1,207:1:36:207:7413:-663.615,-59.016,0	1/1:143:0,143:0:0:143:5078:-457.159,-43.0473,0	0/1:125:63,62:63:2245:62:2206:-161.175,0,-164.683	0/1:144:74,70:74:2632:70:2498:-181.725,0,-193.777	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	1/1:136:0,136:0:0:136:4844:-436.08,-40.9401,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:116:66,50:66:2344:50:1754:-121.679,0,-176.298	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:142:78,64:78:2783:64:2288:-163.435,0,-207.964	1/1:89:0,89:0:0:89:3177:-286.152,-26.7917,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:233:0,233:0:0:233:8330:-749.708,-70.14,0	1/1:156:2,154:2:72:154:5484:-486.767,-40.124,0	1/1:50:1,49:1:36:49:1739:-153.195,-11.4532,0	1/1:92:0,92:0:0:92:3308:-295.297,-27.6948,0	1/1:178:0,178:0:0:178:6366:-573.029,-53.5833,0	1/1:156:4,152:4:144:152:5426:-473.864,-33.6471,0	1/1:34:0,34:0:0:34:1203:-108.573,-10.235,0	1/1:94:0,94:0:0:94:3322:-299.198,-28.2968,0	1/1:80:0,80:0:0:80:2842:-256.018,-24.0824,0	0/1:32:25,7:25:892:7:252:-13.396,0,-70.9667	1/1:147:0,147:0:0:147:5275:-474.86,-44.2514,0	0/1:63:37,26:37:1320:26:936:-65.5946,0,-100.137	0/1:184:106,78:106:3765:78:2788:-195.771,0,-283.661	1/1:201:0,201:0:0:201:7203:-648.323,-60.507,0	1/1:85:0,85:0:0:85:3052:-274.903,-25.5876,0	1/1:89:3,86:3:108:86:3092:-268.426,-16.7165,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:112:0,112:0:0:112:4006:-360.729,-33.7154,0	1/1:103:1,102:1:36:102:3658:-325.804,-27.4078,0	1/1:263:0,263:0:0:263:9401:-845.923,-79.1709,0	1/1:92:0,92:0:0:92:3292:-294.247,-27.6948,0	1/1:44:0,44:0:0:44:1561:-140.78,-13.2453,0	0/1:77:39,38:39:1382:38:1351:-98.7109,0,-101.498	1/1:99:0,99:0:0:99:3503:-315.477,-29.802,0	0/1:35:16,19:16:572:19:684:-51.3543,0,-41.2765	1/1:66:0,66:0:0:66:2347:-211.489,-19.868,0	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0	1/1:41:0,41:0:0:41:1436:-129.533,-12.3422,0	0/1:77:31,46:31:1090:46:1644:-125.052,0,-75.2286	0/1:61:39,22:39:1370:22:792:-53.2405,0,-105.234	1/1:142:0,140:0:0:140:5008:-450.508,-42.1442,0	1/1:79:0,79:0:0:79:2811:-251.954,-23.7814,0
chr06	8850599	.	TTGTA	TTGTG,CTGTG	209924	PASS	AB=0.501016,0.494667;ABP=3.04559,3.983;AC=141,47;AF=0.75,0.25;AN=188;AO=7597,1967;CIGAR=4M1X,1X3M1X;DP=9603;DPB=9602.8;DPRA=51.6183,0.989437;EPP=16085.4,4179.29;EPPR=5.18177;GTI=6;LEN=1,5;MEANALT=1.91398,2.30909;MQM=59.9812,59.9161;MQMR=60;NS=94;NUMALT=2;ODDS=0.0626866;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=270809,69327;QR=31;RO=1;RPL=7551,1956;RPP=16102.6,4179.29;RPPR=5.18177;RPR=46,11;RUN=1,1;SAF=2,0;SAP=16482.3,4274.3;SAR=7595,1967;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:56:0,34,22:0:0:34,22:1199,771:-160.717,-63.0882,-52.8531,-97.9798,0,-91.3571	1/1:95:0,92,0:0:0:92,0:3261,0:-293.355,-27.6948,0,-293.355,-27.6948,-293.355	1/2:100:0,50,50:0:0:50,50:1788,1756:-289.068,-143.271,-128.22,-146.151,0,-131.1	1/1:311:0,310,1:0:0:310,1:11009,29:-990.42,-93.3193,0,-988.112,-90.7207,-987.811	1/2:22:0,10,12:0:0:10,12:356,421:-63.6291,-34.6117,-31.6014,-29.3709,0,-25.7586	1/2:30:0,15,15:0:0:15,15:531,526:-86.4052,-43.1509,-38.6354,-43.6065,0,-39.091	1/1:109:0,108,1:0:0:108,1:3829,36:-344.448,-32.5112,0,-341.511,-29.214,-341.21	1/2:213:0,111,101:0:0:111,101:3935,3570:-611.443,-290.868,-257.454,-320.698,0,-290.294	1/2:104:0,43,61:0:0:43,61:1521,2149:-299.199,-175.314,-162.37,-124.238,0,-105.875	1/2:98:0,47,50:0:0:47,50:1676,1785:-282.144,-145.521,-131.373,-136.619,0,-121.568	1/2:78:0,34,41:0:0:34,41:1222,1448:-217.67,-117.973,-107.738,-99.7499,0,-87.4077	1/1:131:0,131,0:0:0:131,0:4658,0:-419.384,-39.4349,0,-419.384,-39.4349,-419.384	1/2:132:1,63,67:1:31:63,67:2246,2376:-373.941,-191.159,-174.682,-180.667,0,-162.986	1/2:81:0,40,41:0:0:40,41:1415,1457:-234.333,-119.082,-107.041,-115.605,0,-103.263	1/1:105:0,105,0:0:0:105,0:3738,0:-336.621,-31.6082,0,-336.621,-31.6082,-336.621	1/2:70:0,25,45:0:0:25,45:888,1580:-201.302,-128.942,-121.416,-72.7133,0,-59.1669	1/2:36:0,19,16:0:0:19,16:680,571:-101.999,-46.5468,-40.8272,-55.4499,0,-50.6334	1/1:68:0,68,0:0:0:68,0:2427,0:-218.685,-20.47,0,-218.685,-20.47,-218.685	1/1:46:0,45,1:0:0:45,1:1612,36:-145.01,-13.5464,0,-142.073,-10.2491,-141.772	1/1:106:0,106,0:0:0:106,0:3804,0:-342.557,-31.9092,0,-342.557,-31.9092,-342.557	1/2:164:0,82,82:0:0:82,82:2930,2884:-474.003,-235.107,-210.422,-239.251,0,-214.566	1/1:62:0,61,0:0:0:61,0:2175,0:-195.803,-18.3628,0,-195.803,-18.3628,-195.803	1/2:148:0,87,61:0:0:87,61:3111,2112:-425.497,-171.826,-145.636,-254.022,0,-235.659	1/2:64:0,26,36:0:0:26,36:928,1280:-179.962,-104.307,-96.4798,-75.6519,0,-64.8148	1/2:84:0,44,40:0:0:44,40:1568,1411:-243.058,-115.246,-102,-128.166,0,-116.125	1/1:394:0,388,3:0:0:388,3:13861,105:-1246.93,-116.8,0,-1238.38,-108.247,-1237.48	1/1:277:0,276,0:0:0:276,0:9831,0:-884.377,-83.0843,0,-884.377,-83.0843,-884.377	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/2:333:0,171,161:0:0:171,161:6112,5697:-962.386,-464.038,-412.562,-498.353,0,-449.887	1/2:126:0,57,69:0:0:57,69:2048,2383:-361.029,-193.954,-176.795,-167.428,0,-146.657	1/1:119:0,116,3:0:0:116,3:4124,106:-370.992,-34.9195,0,-362.359,-25.9334,-361.456	1/2:4:0,1,3:0:0:1,3:36,105:-11.8329,-8.893,-8.59197,-3.29724,0,-2.39415	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:8:0,4,4:0:0:4,4:144,142:-23.6772,-11.9251,-10.721,-12.1095,0,-10.9054	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:241:0,120,121:0:0:120,121:4270,4270:-696.059,-348.057,-311.934,-348.356,0,-311.931	1/1:115:0,115,0:0:0:115,0:4076,0:-367.028,-34.6185,0,-367.028,-34.6185,-367.028	1/2:70:0,38,31:0:0:38,31:1360,1092:-199.804,-88.8969,-77.4578,-110.902,0,-101.57	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:211:0,210,1:0:0:210,1:7484,36:-673.242,-63.2163,0,-670.305,-59.9191,-670.004	1/1:39:0,39,0:0:0:39,0:1400,0:-126.299,-11.7402,0,-126.299,-11.7402,-126.299	1/2:155:0,87,67:0:0:87,67:3111,2367:-446.433,-192.76,-166.571,-253.668,0,-233.499	1/2:99:0,52,47:0:0:52,47:1868,1659:-287.838,-135.448,-119.794,-152.746,0,-138.597	1/2:113:0,45,68:0:0:45,68:1620,2420:-329.77,-197.586,-184.04,-132.541,0,-112.071	1/2:99:0,55,43:0:0:55,43:1947,1501:-280.719,-122.126,-105.569,-158.633,0,-145.689	1/2:74:0,36,38:0:0:36,38:1288,1342:-214.671,-109.64,-98.8032,-105.387,0,-93.9474	1/1:168:0,168,0:0:0:168,0:6019,0:-541.814,-50.573,0,-541.814,-50.573,-541.814	1/1:96:0,96,0:0:0:96,0:3398,0:-306.037,-28.8989,0,-306.037,-28.8989,-306.037	1/2:173:0,92,81:0:0:92,81:3296,2855:-501.61,-232.801,-205.106,-269.164,0,-244.781	1/2:67:0,37,30:0:0:37,30:1324,1052:-193.929,-85.9585,-74.8204,-108.324,0,-99.2931	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:87:0,84,0:0:0:84,0:2995,0:-269.422,-25.2865,0,-269.422,-25.2865,-269.422	1/1:52:0,52,0:0:0:52,0:1860,0:-167.68,-15.6536,0,-167.68,-15.6536,-167.68	1/2:9:0,3,6:0:0:3,6:108,216:-26.7966,-17.9843,-17.0812,-9.17208,0,-7.3659	1/2:150:0,74,76:0:0:74,76:2625,2646:-429.348,-215.479,-193.203,-214.22,0,-191.342	1/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chr06	8917882	.	C	A	111667	PASS	AB=0.421188;ABP=129.311;AC=143;AF=0.760638;AN=188;AO=4398;CIGAR=1X;DP=5762;DPB=5762;DPRA=31.2935;EPP=9553.15;EPPR=2960.56;GTI=0;LEN=1;MEANALT=1.02174;MQM=59.4395;MQMR=59.8789;NS=94;NUMALT=1;ODDS=1.59707;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155988;QR=48168;RO=1362;RPL=852;RPP=3586.4;RPPR=635.798;RPR=3546;RUN=1;SAF=852;SAP=3586.4;SAR=3546;SRF=366;SRP=635.798;SRR=996;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:15,12:15:493:12:415:-29.5385,0,-36.5537	1/1:115:0,115:0:0:115:4088:-368.024,-34.6185,0	0/1:136:94,42:94:3310:42:1458:-90.5343,0,-257.165	1/1:182:0,182:0:0:182:6467:-582.097,-54.7875,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:44:26,18:26:936:18:625:-43.304,0,-71.3141	1/1:100:0,100:0:0:100:3554:-320.066,-30.103,0	0/1:122:65,57:65:2278:57:1998:-143.318,0,-168.481	0/1:70:46,24:46:1608:24:848:-55.5427,0,-123.881	0/1:98:55,43:55:1948:43:1540:-109.392,0,-146.092	0/1:33:17,16:17:608:16:568:-41.5175,0,-45.118	1/1:39:0,39:0:0:39:1383:-124.765,-11.7402,0	0/1:57:28,29:28:1004:29:1040:-76.7547,0,-73.5138	0/1:38:21,17:21:748:17:604:-43.2506,0,-56.2062	1/1:48:1,47:1:36:47:1682:-148.069,-10.8512,0	0/1:45:27,18:27:968:18:648:-45.1055,0,-73.891	1/1:54:0,54:0:0:54:1931:-174.066,-16.2556,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:72:0,72:0:0:72:2554:-229.399,-21.6742,0	0/1:85:45,40:45:1600:40:1425:-102.956,0,-118.703	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:31:17,14:17:608:14:487:-34.8213,0,-45.7201	0/1:50:26,24:26:928:24:847:-61.496,0,-68.7868	0/1:30:20,10:20:720:10:356:-23.35,0,-56.0841	1/1:193:0,193:0:0:193:6828:-614.58,-58.0988,0	1/1:122:0,122:0:0:122:4331:-389.908,-36.7257,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:136:89,47:89:3168:47:1673:-109.824,0,-244.403	0/1:105:59,46:59:2056:46:1628:-115.192,0,-153.698	1/1:78:0,78:0:0:78:2752:-247.881,-23.4803,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:11:0,11:0:0:11:387:-35.1345,-3.31133,0	0/1:5:2,3:2:72:3:108:-8.56518,0,-5.33157	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:152:69,83:69:2419:83:2947:-219.677,0,-172.206	1/1:45:0,45:0:0:45:1567:-141.304,-13.5464,0	0/1:35:18,17:18:648:17:608:-44.5136,0,-48.1158	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:115:0,115:0:0:115:4105:-369.625,-34.6185,0	1/1:25:0,25:0:0:25:892:-80.596,-7.52575,0	0/1:69:33,36:33:1166:36:1266:-93.4649,0,-84.4745	0/1:36:17,19:17:608:19:684:-51.0532,0,-44.2149	0/1:52:29,22:29:1028:22:792:-56.0366,0,-77.2657	0/1:56:45,11:45:1589:11:384:-18.0183,0,-126.441	0/1:68:40,28:40:1423:28:988:-68.7237,0,-107.893	1/1:64:0,64:0:0:64:2245:-202.262,-19.2659,0	1/1:62:0,62:0:0:62:2180:-196.383,-18.6639,0	0/1:90:53,37:53:1899:37:1320:-92.0035,0,-144.095	0/1:102:61,41:61:2169:41:1444:-99.5479,0,-164.77	0/1:7:6,1:6:212:1:36:-1.49006,0,-17.3176	1/1:63:0,63:0:0:63:2230:-200.899,-18.9649,0	1/1:44:0,44:0:0:44:1518:-136.895,-13.2453,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:75:47,28:47:1625:28:981:-66.0194,0,-123.955	1/1:14:0,14:0:0:14:504:-45.6972,-4.21442,0	1/1:4:0,4:0:0:4:125:-11.5586,-1.20412,0	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/1:68:39,29:39:1360:29:1009:-69.9799,0,-102.225	1/1:76:1,75:1:36:75:2681:-237.935,-19.28,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:187:0,187:0:0:187:6677:-600.37,-56.2926,0	1/1:116:1,115:1:36:115:4045:-360.604,-31.3212,0	1/1:64:0,64:0:0:64:2276:-205.098,-19.2659,0	1/1:36:0,36:0:0:36:1260:-113.691,-10.8371,0	1/1:65:0,65:0:0:65:2276:-204.976,-19.567,0	1/1:108:0,108:0:0:108:3832:-344.986,-32.5112,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:61:0,61:0:0:61:2163:-194.932,-18.3628,0	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	0/1:12:6,6:6:201:6:201:-14.8047,0,-14.8047	1/1:85:0,85:0:0:85:2978:-268.196,-25.5876,0	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	0/1:168:101,67:101:3536:67:2338:-160.07,0,-267.809	1/1:98:0,98:0:0:98:3516:-316.648,-29.5009,0	1/1:22:0,22:0:0:22:767:-69.3322,-6.62266,0	1/1:99:0,99:0:0:99:3537:-318.537,-29.802,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:109:0,109:0:0:109:3869:-348.391,-32.8123,0	1/1:49:0,49:0:0:49:1735:-156.407,-14.7505,0	1/1:135:0,135:0:0:135:4744:-426.812,-40.6391,0	1/1:103:1,102:1:36:102:3651:-325.197,-27.4104,0	1/1:50:0,50:0:0:50:1796:-161.921,-15.0515,0	0/1:56:31,25:31:1112:25:892:-63.7411,0,-83.5337	1/1:97:1,96:1:36:96:3444:-306.572,-25.6016,0	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	1/1:56:0,56:0:0:56:1984:-178.832,-16.8577,0	1/1:38:0,38:0:0:38:1353:-122.069,-11.4391,0	1/1:20:0,20:0:0:20:720:-65.126,-6.0206,0	0/1:62:37,24:37:1332:24:858:-58.8115,0,-101.46	0/1:39:25,14:25:896:14:504:-33.957,0,-69.2202	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:67:0,67:0:0:67:2376:-214.097,-20.169,0
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chr06	9079598	.	A	T	20865	PASS	AB=0.474513;ABP=18.0641;AC=43;AF=0.228723;AN=188;AO=1284;CIGAR=1X;DP=6783;DPB=6783;DPRA=0.954934;EPP=2765.18;EPPR=11481.5;GTI=4;LEN=1;MEANALT=1.02;MQM=59.9743;MQMR=59.9842;NS=94;NUMALT=1;ODDS=0.848706;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45853;QR=196656;RO=5496;RPL=1281;RPP=2765.18;RPPR=11481.5;RPR=3;RUN=1;SAF=0;SAP=2791.18;SAR=1284;SRF=0;SRP=11937.4;SRR=5496;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:31,24:31:1116:24:864:-61.5259,0,-84.195	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:100:53,47:53:1908:47:1684:-121.744,0,-141.895	0/0:102:102,0:102:3637:0:0:0,-30.7051,-327.534	0/1:22:11,11:11:392:11:392:-28.9974,0,-28.9974	0/1:33:22,11:22:792:11:396:-26.0488,0,-61.6717	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/1:104:37,66:37:1324:66:2353:-180.779,0,-88.2129	0/1:64:51,13:51:1819:13:468:-23.1937,0,-144.725	0/1:54:28,26:28:1000:26:936:-68.3038,0,-74.0598	0/1:62:32,30:32:1148:30:1072:-78.1286,0,-84.966	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.845	0/1:59:32,27:32:1134:27:972:-70.0371,0,-84.6065	0/1:131:71,60:71:2529:60:2152:-154.512,0,-188.425	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:68:44,24:44:1565:24:840:-55.4454,0,-120.67	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.747	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:241:241,0:241:8630:0:0:0,-72.5482,-776.693	0/1:120:56,64:56:2012:64:2294:-170.596,0,-145.23	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/1:45:24,21:24:860:21:748:-54.0989,0,-64.1749	0/1:19:10,9:10:360:9:309:-22.4211,0,-27.0247	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/0:178:177,1:177:6352:1:36:0,-49.9851,-568.17	0/0:110:110,0:110:3920:0:0:0,-33.1133,-352.992	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:120:53,67:53:1896:67:2387:-178.958,0,-134.794	0/1:84:45,39:45:1612:39:1385:-99.6603,0,-120.084	0/0:70:67,3:67:2396:3:108:0,-10.9969,-205.822	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:174:104,70:104:3732:70:2512:-173.953,0,-283.701	0/0:91:91,0:91:3255:0:0:0,-27.3937,-293.162	0/1:49:26,23:26:932:23:828:-60.0936,0,-69.4484	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/0:78:76,2:76:2719:2:72:0,-16.6436,-238.116	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:115:65,50:65:2328:50:1773:-125.233,0,-175.161	0/1:47:25,22:25:900:22:785:-56.8256,0,-67.1726	0/1:36:17,19:17:599:19:684:-51.0532,0,-43.401	0/1:108:65,43:65:2328:43:1528:-105.302,0,-177.246	0/1:58:26,32:26:936:32:1133:-84.8169,0,-67.0997	0/0:95:95,0:95:3373:0:0:0,-28.5978,-303.786	0/0:72:71,0:71:2543:0:0:0,-21.3731,-228.76	0/1:88:36,52:36:1288:52:1864:-141.549,0,-89.7329	0/1:87:38,49:38:1368:49:1760:-132.494,0,-97.2312	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:110:110,0:110:3939:0:0:0,-33.1133,-354.701	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.999	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:73:44,29:44:1568:29:1036:-71.5787,0,-119.436	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/1:60:31,29:31:1112:29:1044:-76.213,0,-82.3295	0/0:111:110,0:110:3939:0:0:0,-33.1133,-354.341	0/1:7:5,2:5:180:2:64:-3.97148,0,-14.4449	0/0:174:174,0:174:6227:0:0:0,-52.3792,-560.519	0/0:137:137,0:137:4889:0:0:0,-41.2411,-440.162	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:124:121,3:121:4308:3:108:0,-27.2525,-377.787	0/0:123:121,2:121:4308:2:60:0,-31.3335,-382.203	0/0:69:69,0:69:2471:0:0:0,-20.7711,-222.629	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:63:43,20:43:1512:20:708:-45.0807,0,-117.405	0/0:128:128,0:128:4573:0:0:0,-38.5318,-411.735	0/1:68:33,35:33:1179:35:1256:-92.8752,0,-85.9472	0/1:129:70,59:70:2496:59:2096:-150.075,0,-186.06	0/0:106:106,0:106:3783:0:0:0,-31.9092,-340.669	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:78:76,2:76:2732:2:68:0,-17.0226,-239.665	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:72:71,1:71:2548:1:36:0,-18.0759,-225.972	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.338	0/0:171:171,0:171:6123:0:0:0,-51.4761,-550.942	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:40:19,21:19:680:21:756:-56.326,0,-49.488	0/0:137:135,2:135:4843:2:57:0,-35.8278,-430.609	0/1:23:15,8:15:540:8:284:-18.9797,0,-42.0128	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.035	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/0:69:69,0:69:2475:0:0:0,-20.7711,-223.003	0/1:144:71,73:71:2526:73:2628:-193.418,0,-184.243	0/1:84:27,57:27:968:57:2029:-157.594,0,-62.1508	0/0:107:107,0:107:3821:0:0:0,-32.2102,-344.086	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763
chr06	9098908	.	G	A	86582.8	PASS	AB=0.545109;ABP=35.5305;AC=145;AF=0.771277;AN=188;AO=4011;CIGAR=1X;DP=4854;DPB=4854;DPRA=0;EPP=8712.79;EPPR=1831.39;GTI=5;LEN=1;MEANALT=1.01064;MQM=59.986;MQMR=59.9679;NS=94;NUMALT=1;ODDS=0.111139;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143304;QR=30170;RO=842;RPL=0;RPP=8712.79;RPPR=1831.39;RPR=4011;RUN=1;SAF=4011;SAP=8712.79;SAR=0;SRF=842;SRP=1831.39;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	1/1:39:0,39:0:0:39:1393:-125.668,-11.7402,0	0/1:34:12,22:12:432:22:777:-60.0153,0,-28.9862	1/1:116:0,116:0:0:116:4123:-371.252,-34.9195,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:54:0,54:0:0:54:1909:-172.086,-16.2556,0	0/1:55:20,35:20:712:35:1256:-96.7886,0,-47.85	0/1:31:17,14:17:612:14:498:-35.823,0,-46.0815	0/1:41:12,29:12:432:29:1044:-81.9326,0,-26.879	0/1:69:36,33:36:1292:33:1188:-86.4575,0,-95.8127	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:59:23,36:23:813:36:1292:-98.823,0,-55.7283	0/1:55:30,25:30:1080:25:892:-64.043,0,-80.9208	1/1:50:0,50:0:0:50:1777:-160.211,-15.0515,0	0/1:31:11,20:11:396:20:716:-55.4358,0,-26.6508	1/1:37:0,37:0:0:37:1305:-117.749,-11.1381,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:82:0,82:0:0:82:2929:-263.843,-24.6845,0	0/1:73:36,37:36:1292:37:1328:-97.847,0,-94.6086	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:62:29,33:29:1044:33:1188:-88.5647,0,-75.6109	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:29:17,12:17:593:12:432:-30.4913,0,-44.9648	1/1:175:0,175:0:0:175:6254:-562.954,-52.6803,0	1/1:147:0,147:0:0:147:5236:-471.378,-44.2514,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:131:64,67:64:2288:67:2404:-177.182,0,-166.747	0/1:60:30,30:30:1080:30:1076:-79.0911,0,-79.4515	1/1:70:0,70:0:0:70:2495:-224.8,-21.0721,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:18:10,8:10:352:8:284:-20.4848,0,-26.5997	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:139:65,74:65:2332:74:2645:-196.452,0,-168.296	1/1:92:0,92:0:0:92:3273:-294.789,-27.6948,0	0/1:47:23,24:23:828:24:864:-63.9342,0,-60.6957	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	1/1:32:0,32:0:0:32:1133:-102.277,-9.63296,0	0/1:44:14,30:14:504:30:1072:-83.5471,0,-32.4528	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	0/1:40:20,20:20:720:20:719:-52.9974,0,-53.0876	0/1:37:10,27:10:356:27:968:-76.2993,0,-21.2431	0/1:39:8,31:8:288:31:1089:-86.5771,0,-14.5272	1/1:85:1,84:1:36:84:2995:-266.182,-21.9893,0	1/1:46:0,46:0:0:46:1633:-147.257,-13.8474,0	0/1:71:32,38:32:1148:38:1359:-101.179,0,-82.1695	0/1:57:17,40:17:612:40:1425:-111.331,0,-38.2547	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:43:0,43:0:0:43:1533:-138.261,-12.9443,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:63:38,25:38:1360:25:892:-61.6348,0,-103.736	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	0/1:53:28,25:28:1004:25:896:-65.0058,0,-74.7213	1/1:105:0,105:0:0:105:3764:-338.959,-31.6082,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:80:0,80:0:0:80:2846:-256.375,-24.0824,0	1/1:71:2,69:2:72:69:2457:-214.546,-14.5364,0	1/1:41:0,41:0:0:41:1466:-132.236,-12.3422,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:76:1,75:1:36:75:2684:-238.207,-19.28,0	1/1:101:2,99:2:72:99:3495:-307.923,-23.5673,0	1/1:42:0,42:0:0:42:1492:-134.572,-12.6433,0	1/1:34:0,34:0:0:34:1224:-110.459,-10.235,0	1/1:55:0,55:0:0:55:1969:-177.476,-16.5567,0	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:100:0,100:0:0:100:3592:-323.486,-30.103,0	0/1:45:18,27:18:644:27:964:-73.5305,0,-44.7442	0/1:96:49,47:49:1760:47:1668:-121.506,0,-129.785	1/1:44:0,44:0:0:44:1554:-140.148,-13.2453,0	1/1:41:0,41:0:0:41:1471:-132.678,-12.3422,0	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:62:0,62:0:0:62:2213:-199.433,-18.6639,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:62:0,62:0:0:62:2198:-198.082,-18.6639,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:22:7,15:7:252:15:540:-42.3139,0,-16.4063	1/1:89:0,89:0:0:89:3185:-286.872,-26.7917,0	0/1:18:7,11:7:252:11:388:-29.8388,0,-17.6104	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:59:0,59:0:0:59:2109:-190.077,-17.7608,0	0/1:139:72,67:72:2560:67:2406:-174.953,0,-188.805	0/1:44:20,24:20:720:24:852:-63.7551,0,-51.8835	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:71:0,71:0:0:71:2556:-230.29,-21.3731,0
chr06	9098932	.	A	G	12877.4	PASS	AB=0.456267;ABP=32.829;AC=43;AF=0.228723;AN=188;AO=826;CIGAR=1X;DP=4726;DPB=4726;DPRA=0.824069;EPP=1796.65;EPPR=8458.73;GTI=4;LEN=1;MEANALT=1.04167;MQM=59.9673;MQMR=59.9903;NS=94;NUMALT=1;ODDS=0.190022;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29451;QR=139229;RO=3898;RPL=826;RPP=1796.65;RPPR=8458.73;RPR=0;RUN=1;SAF=826;SAP=1796.65;SAR=0;SRF=3898;SRP=8467.41;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:33:21,12:21:737:12:432:-29.2872,0,-56.7166	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/1:54:34,20:34:1224:20:712:-48.151,0,-94.2114	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/1:39:27,12:27:964:12:428:-27.1186,0,-75.3367	0/1:69:34,35:34:1224:35:1252:-92.214,0,-89.696	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/1:59:36,23:36:1288:23:817:-56.0905,0,-98.4628	0/1:53:23,29:23:824:29:1035:-77.4451,0,-58.47	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:30:19,11:19:665:11:396:-26.9518,0,-51.1419	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:71:36,35:36:1281:35:1260:-92.3324,0,-94.2181	0/0:49:49,0:49:1704:0:0:0,-14.7505,-153.638	0/1:59:32,26:32:1148:26:932:-66.3793,0,-85.8103	0/1:16:12,4:12:432:4:140:-8.1281,0,-34.4047	0/1:29:12,17:12:432:17:597:-45.3263,0,-30.4913	0/0:170:170,0:170:6066:0:0:0,-51.1751,-546.041	0/0:139:139,0:139:4946:0:0:0,-41.8432,-445.289	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/1:125:62,63:62:2209:63:2206:-161.172,0,-161.444	0/1:59:30,29:30:1072:29:1025:-74.7999,0,-79.0317	0/0:67:66,1:66:2376:1:36:0,-16.5707,-210.497	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:7:1,6:1:36:6:208:-16.9519,0,-1.49106	0/1:18:8,10:8:280:10:352:-26.5997,0,-20.1208	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:139:76,63:76:2713:63:2243:-160.289,0,-202.569	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/1:47:24,23:24:860:23:828:-60.6957,0,-63.5734	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:42:28,14:28:1008:14:504:-33.0548,0,-78.3931	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:40:20,20:20:705:20:712:-52.3655,0,-51.7316	0/1:36:27,9:27:949:9:324:-18.6688,0,-74.8857	0/1:37:28,9:28:1008:9:324:-18.3677,0,-79.8982	0/0:82:81,1:81:2904:1:36:0,-21.0862,-257.997	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:69:37,32:37:1332:32:1148:-82.8303,0,-99.4113	0/1:55:38,17:38:1356:17:612:-38.8568,0,-105.784	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:80:80,0:80:2823:0:0:0,-24.0824,-254.306	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:62:24,38:24:860:38:1368:-104.757,0,-59.058	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:13:6,7:6:208:7:244:-18.386,0,-15.1457	0/1:52:25,27:25:896:27:940:-69.2572,0,-65.3068	0/0:104:104,0:104:3714:0:0:0,-31.3071,-334.461	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:77:77,0:77:2711:0:0:0,-23.1793,-244.231	0/0:70:68,2:68:2444:2:72:0,-14.2354,-213.378	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:72:71,1:71:2544:1:36:0,-18.0759,-225.612	0/0:99:97,2:97:3439:2:72:0,-22.9652,-302.883	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.459	0/0:54:54,0:54:1935:0:0:0,-16.2556,-174.414	0/1:17:10,7:10:360:7:242:-16.9986,0,-27.6268	0/0:95:95,0:95:3382:0:0:0,-28.5978,-304.593	0/1:44:26,18:26:936:18:648:-45.4066,0,-71.3141	0/1:94:46,48:46:1656:48:1705:-125.437,0,-121.032	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.291	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:62:62,0:62:2194:0:0:0,-18.6639,-197.722	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.194	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/0:90:90,0:90:3221:0:0:0,-27.0927,-290.11	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/1:136:66,70:66:2368:70:2505:-184.761,0,-172.438	0/1:43:23,20:23:813:20:720:-52.1845,0,-60.5448	0/0:65:65,0:65:2313:0:0:0,-19.5669,-208.429	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374
chr06	9119945	.	C	A	44291.4	PASS	AB=0.470978;ABP=46.1169;AC=45;AF=0.239362;AN=188;AO=2800;CIGAR=1X;DP=14511;DPB=14511;DPRA=1.07895;EPP=6057.1;EPPR=24968.3;GTI=2;LEN=1;MEANALT=1.04918;MQM=59.8586;MQMR=59.8492;NS=94;NUMALT=1;ODDS=2.48332;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98422;QR=417636;RO=11708;RPL=3;RPP=6057.1;RPPR=24968.3;RPR=2797;RUN=1;SAF=2800;SAP=6083.13;SAR=0;SRF=11708;SRP=25426.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:35,22:35:1252:22:784:-53.7252,0,-95.8264	0/0:365:364,1:364:13000:1:36:0,-106.278,-1166.22	0/1:135:61,74:61:2165:74:2609:-194.415,0,-154.476	0/0:345:345,0:345:12326:0:0:0,-103.855,-1109.18	0/1:111:63,47:63:2248:47:1634:-113.87,0,-169.11	0/1:125:79,46:79:2828:46:1633:-109.628,0,-217.084	0/0:169:169,0:169:6044:0:0:0,-50.8741,-543.033	0/1:232:129,103:129:4591:103:3654:-259.224,0,-343.518	0/1:172:80,92:80:2864:92:3280:-243.641,0,-206.22	0/1:199:118,81:118:4205:81:2856:-197.37,0,-318.724	0/1:105:45,60:45:1612:60:2136:-160.869,0,-111.417	0/0:101:101,0:101:3599:0:0:0,-30.404,-324.117	0/1:84:52,32:52:1864:32:1144:-77.983,0,-142.753	0/1:122:64,58:64:2304:58:2041:-147.223,0,-168.551	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/1:97:49,48:49:1744:48:1724:-126.245,0,-127.024	0/0:144:143,1:143:5128:1:36:0,-39.75,-458.063	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:332:331,1:331:11817:1:36:0,-96.3437,-1058.77	0/1:267:131,136:131:4646:136:4775:-349.519,0,-337.884	0/0:201:201,0:201:7143:0:0:0,-60.507,-642.934	0/1:46:22,24:22:780:24:841:-62.159,0,-56.6757	0/1:203:121,82:121:4281:82:2843:-194.907,0,-322.021	0/1:143:72,71:72:2568:71:2475:-179.953,0,-188.323	0/0:472:471,1:471:16688:1:32:0,-138.887,-1496.14	0/0:390:390,0:390:13920:0:0:0,-117.402,-1247.9	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:341:213,128:213:7582:128:4481:-300.757,0,-576.411	0/1:455:221,233:221:7882:233:8168:-598.085,0,-572.379	0/0:182:181,1:181:6469:1:36:0,-51.1892,-577.678	0/1:30:19,11:19:680:11:384:-25.8638,0,-52.4983	0/0:47:47,0:47:1668:0:0:0,-14.1484,-150.407	0/1:15:4,11:4:144:11:377:-29.7425,0,-8.79817	0/1:13:3,10:3:108:10:337:-26.7413,0,-6.16178	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:288:149,139:149:5303:139:4913:-355.439,0,-390.708	0/0:185:185,0:185:6562:0:0:0,-55.6905,-590.478	0/1:116:65,51:65:2324:51:1790:-126.453,0,-167.471	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:222:222,0:222:7936:0:0:0,-66.8287,-714.264	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:161:86,75:86:3061:75:2626:-188.099,0,-227.253	0/1:131:64,67:64:2292:67:2388:-175.743,0,-166.977	0/1:93:57,36:57:2020:36:1280:-87.5074,0,-154.075	0/1:154:78,76:78:2776:76:2646:-192.01,0,-203.723	0/1:225:131,94:131:4681:94:3321:-231.356,0,-353.718	0/0:311:309,2:309:11041:2:72:0,-86.7836,-986.748	0/0:185:185,0:185:6609:0:0:0,-55.6905,-594.89	0/1:273:155,118:155:5549:118:4080:-285.188,0,-417.341	0/1:194:104,90:104:3697:90:3095:-220.382,0,-274.533	0/1:26:9,17:9:324:17:596:-46.141,0,-21.6791	0/0:172:172,0:172:6148:0:0:0,-51.7772,-553.421	0/0:128:127,1:127:4532:1:36:0,-34.9336,-404.451	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/1:195:106,89:106:3776:89:3111:-221.494,0,-281.34	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:15:10,5:10:356:5:176:-11.6696,0,-27.8658	0/1:31:9,22:9:324:22:753:-58.7532,0,-20.1739	0/1:151:80,71:80:2868:71:2508:-180.508,0,-205.874	0/0:161:160,1:160:5708:1:36:0,-44.8676,-507.887	0/1:14:5,9:5:176:9:275:-20.8325,0,-11.9706	0/0:410:410,0:410:14634:0:0:0,-123.422,-1316.81	0/0:217:213,4:213:7602:4:144:0,-52.0099,-670.904	0/0:125:124,1:124:4452:1:36:0,-34.0305,-394.909	0/0:101:101,0:101:3569:0:0:0,-30.404,-321.42	0/0:211:208,3:208:7401:3:104:0,-53.8145,-653.761	0/0:239:238,1:238:8504:1:21:0,-69.8462,-763.263	0/0:48:48,0:48:1704:0:0:0,-14.4494,-152.624	0/0:118:118,0:118:4220:0:0:0,-35.5215,-379.981	0/0:120:120,0:120:4295:0:0:0,-36.1236,-384.385	0/1:32:13,19:13:449:19:649:-49.0952,0,-31.1045	0/0:181:181,0:181:6459:0:0:0,-54.4864,-581.398	0/1:94:49,45:49:1756:45:1559:-112.298,0,-130.026	0/1:220:120,100:120:4258:100:3503:-249.24,0,-312.847	0/0:236:236,0:236:8412:0:0:0,-71.0431,-754.499	0/0:226:226,0:226:8058:0:0:0,-68.0328,-725.24	0/0:226:223,3:223:7893:3:93:0,-59.356,-701.722	0/1:24:13,10:13:464:10:352:-24.7354,0,-34.8142	0/0:174:173,1:173:6181:1:36:0,-48.7809,-550.448	0/0:117:117,0:117:4162:0:0:0,-35.2205,-372.42	0/0:306:304,2:304:10834:2:72:0,-85.2785,-965.764	0/0:159:159,0:159:5692:0:0:0,-47.8638,-512.398	0/0:111:111,0:111:3970:0:0:0,-33.4143,-357.49	0/1:156:86,70:86:3075:70:2512:-179.371,0,-230.017	0/0:242:242,0:242:8651:0:0:0,-72.8493,-778.585	0/1:53:18,35:18:648:35:1248:-96.6653,0,-42.6973	0/0:108:108,0:108:3859:0:0:0,-32.5112,-345.164	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.516	0/1:172:87,85:87:3103:85:3044:-222.413,0,-227.72	0/1:111:37,74:37:1315:74:2639:-204.337,0,-85.2367	0/0:180:179,1:179:6382:1:36:0,-50.5871,-570.871	0/0:118:118,0:118:4231:0:0:0,-35.5215,-380.962
chr06	9122755	.	A	C	289067	PASS	AB=0.475596;ABP=34.0646;AC=145;AF=0.771277;AN=188;AO=10660;CIGAR=1X;DP=13843;DPB=13843;DPRA=0;EPP=205.087;EPPR=18.1942;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9625;MQMR=59.9704;NS=94;NUMALT=1;ODDS=2.36262;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=377482;QR=112264;RO=3175;RPL=10610;RPP=22718.6;RPPR=6802.22;RPR=50;RUN=1;SAF=4784;SAP=245.919;SAR=5876;SRF=1502;SRP=23.009;SRR=1673;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:47,30:47:1668:30:1068:-73.2528,0,-127.228	1/1:231:1,230:1:32:230:8181:-733.106,-66.3386,0	0/1:272:129,143:129:4531:143:5066:-374.205,0,-326.083	1/1:208:0,208:0:0:208:7404:-666.347,-62.6142,0	0/1:114:67,47:67:2378:47:1646:-114.107,0,-179.96	0/1:90:56,34:56:1966:34:1205:-81.6612,0,-150.121	1/1:173:0,173:0:0:173:6169:-555.307,-52.0782,0	0/1:183:100,83:100:3531:83:2907:-206.759,0,-262.914	0/1:135:62,73:62:2199:73:2540:-188.209,0,-157.533	0/1:145:87,58:87:3069:58:2054:-141.481,0,-232.783	0/1:150:64,86:64:2291:86:3058:-230.294,0,-161.227	1/1:165:0,165:0:0:165:5887:-529.939,-49.67,0	0/1:189:100,89:100:3523:89:3118:-223.951,0,-260.387	0/1:136:78,58:78:2732:58:2052:-144.009,0,-205.184	1/1:165:0,165:0:0:165:5815:-523.464,-49.67,0	0/1:145:81,64:81:2848:64:2229:-157.222,0,-212.909	1/1:134:0,134:0:0:134:4780:-430.359,-40.338,0	1/1:134:1,132:1:36:132:4695:-419.117,-36.7714,0	1/1:113:0,113:0:0:113:3970:-357.492,-34.0164,0	1/1:293:0,293:0:0:293:10354:-931.786,-88.2018,0	0/1:200:89,111:89:3159:111:3937:-294.304,0,-224.33	1/1:68:0,68:0:0:68:2388:-215.174,-20.47,0	0/1:98:46,52:46:1605:52:1859:-138.088,0,-115.236	0/1:202:119,83:119:4230:83:2951:-205.016,0,-320.074	0/1:63:40,23:40:1411:23:811:-54.3451,0,-108.322	1/1:268:1,267:1:36:267:9476:-849.096,-77.0778,0	1/1:283:1,281:1:36:281:9986:-895.139,-81.5971,0	1/1:75:0,75:0:0:75:2667:-240.271,-22.5773,0	0/1:282:142,140:142:5046:140:4986:-363.999,0,-369.398	0/1:119:56,63:56:2000:63:2236:-165.679,0,-144.45	1/1:172:0,172:0:0:172:6102:-549.27,-51.7772,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:450:226,223:226:8022:223:7930:-578.206,0,-586.477	1/1:162:0,162:0:0:162:5719:-514.832,-48.7669,0	0/1:161:83,78:83:2934:78:2792:-203.055,0,-215.83	0/1:8:5,2:5:180:2:72:-4.36968,0,-14.085	1/1:194:1,193:1:27:193:6859:-614.683,-55.7,0	1/1:67:0,67:0:0:67:2367:-213.286,-20.169,0	0/1:223:105,118:105:3727:118:4176:-308.894,0,-268.504	0/1:204:107,97:107:3772:97:3398:-244.625,0,-278.269	0/1:141:70,71:70:2467:71:2525:-185.055,0,-179.84	0/1:102:67,35:67:2357:35:1221:-79.4862,0,-181.683	0/1:156:79,77:79:2782:77:2713:-197.449,0,-203.472	1/1:192:4,188:4:144:188:6661:-586.255,-44.4841,0	1/1:123:0,123:0:0:123:4312:-388.256,-37.0267,0	0/1:238:137,101:137:4858:101:3544:-247.522,0,-365.732	0/1:232:117,115:117:4139:115:4075:-297.098,0,-302.859	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:184:0,184:0:0:184:6463:-581.754,-55.3895,0	1/1:47:0,47:0:0:47:1645:-148.333,-14.1484,0	0/1:11:9,2:9:316:2:72:-3.52539,0,-25.4675	0/1:187:100,87:100:3572:87:3070:-220.235,0,-265.396	1/1:64:0,64:0:0:64:2266:-204.202,-19.2659,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:148:73,75:73:2563:75:2671:-196.082,0,-186.37	1/1:210:0,208:0:0:208:7396:-665.326,-62.6142,0	0/1:12:9,3:9:312:3:108:-6.46281,0,-24.803	1/1:191:0,191:0:0:191:6783:-610.542,-57.4967,0	1/1:211:3,207:3:99:207:7337:-651.134,-54.3321,0	1/1:112:1,111:1:36:111:3950:-352.094,-30.1171,0	1/1:123:0,123:0:0:123:4341:-390.867,-37.0267,0	1/1:241:2,239:2:72:239:8339:-743.69,-65.7115,0	1/1:158:3,155:3:104:155:5532:-488.304,-37.8599,0	1/1:56:0,56:0:0:56:1957:-176.401,-16.8577,0	1/1:156:0,156:0:0:156:5536:-498.366,-46.9607,0	1/1:176:0,176:0:0:176:6243:-561.968,-52.9813,0	0/1:25:12,13:12:420:13:468:-34.9339,0,-30.6083	1/1:84:0,84:0:0:84:2977:-268.158,-25.2865,0	0/1:127:58,69:58:2060:69:2395:-177.574,0,-147.441	0/1:264:128,136:128:4503:136:4830:-354.597,0,-325.933	1/1:153:2,151:2:68:151:5424:-481.83,-39.5999,0	1/1:184:0,184:0:0:184:6533:-587.423,-55.3895,0	1/1:147:1,146:1:36:146:5197:-464.202,-40.6531,0	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	1/1:176:0,176:0:0:176:6209:-558.893,-52.9813,0	1/1:148:0,148:0:0:148:5244:-472.097,-44.5524,0	1/1:256:2,254:2:72:254:9034:-806.206,-70.227,0	1/1:229:2,227:2:72:227:8055:-718.133,-62.0991,0	1/1:123:0,123:0:0:123:4385:-394.824,-37.0267,0	0/1:201:100,101:100:3508:101:3544:-258.663,0,-255.427	1/1:292:3,289:3:108:289:10227:-910.291,-77.8256,0	0/1:102:50,52:50:1766:52:1860:-136.975,0,-128.517	1/1:186:0,186:0:0:186:6530:-587.792,-55.9916,0	1/1:144:0,144:0:0:144:5065:-455.992,-43.3483,0	1/1:85:0,85:0:0:85:3009:-271.042,-25.5876,0	0/1:174:102,72:102:3628:72:2542:-176.652,0,-274.348	0/1:189:118,71:118:4181:71:2484:-166.916,0,-319.58	1/1:172:0,172:0:0:172:6125:-551.352,-51.7772,0	1/1:259:1,257:1:36:257:9059:-811.723,-74.4001,0
chr06	9122776	.	C	A	29030.6	PASS	AB=0.521833;ABP=16.4745;AC=42;AF=0.223404;AN=188;AO=1714;CIGAR=1X;DP=7644;DPB=7644;DPRA=1.16925;EPP=3716.23;EPPR=12853.8;GTI=0;LEN=1;MEANALT=1.05769;MQM=59.9492;MQMR=59.9677;NS=94;NUMALT=1;ODDS=2.67948;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61259;QR=211116;RO=5918;RPL=1714;RPP=3724.91;RPPR=12853.8;RPR=0;RUN=1;SAF=1;SAP=3716.23;SAR=1713;SRF=0;SRP=12853.8;SRR=5918;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:20,27:20:712:27:964:-72.9284,0,-50.2582	0/0:149:148,0:148:5260:0:0:0,-44.5524,-473.179	0/1:160:83,77:83:2968:77:2745:-199.126,0,-219.188	0/0:121:121,0:121:4328:0:0:0,-36.4246,-389.696	0/1:65:26,39:26:932:39:1396:-106.372,0,-64.6319	0/1:44:17,27:17:604:27:964:-73.8315,0,-41.4453	0/0:93:93,0:93:3275:0:0:0,-27.9958,-294.924	0/1:111:51,60:51:1820:60:2152:-160.533,0,-130.667	0/1:76:34,42:34:1224:42:1481:-110.701,0,-87.5888	0/1:89:38,51:38:1360:51:1815:-136.835,0,-95.9089	0/1:74:44,30:44:1572:30:1080:-75.237,0,-119.495	0/0:90:89,1:89:3170:1:21:0,-24.9929,-283.424	0/1:95:50,45:50:1769:45:1612:-116.772,0,-130.893	0/1:68:37,31:37:1324:31:1084:-77.3969,0,-98.9921	0/0:92:91,0:91:3244:0:0:0,-27.3937,-291.819	0/1:64:31,33:31:1112:33:1180:-87.2421,0,-81.1254	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.822	0/0:71:70,0:70:2516:0:0:0,-21.0721,-226.363	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.54	0/0:150:149,1:149:5328:1:32:0,-41.9552,-476.455	0/1:100:58,41:58:2072:41:1460:-101.573,0,-156.628	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:53:25,28:25:881:28:1000:-74.3608,0,-63.6513	0/1:111:41,70:41:1460:70:2512:-192.918,0,-98.2817	0/1:28:13,15:13:464:15:532:-39.7842,0,-33.6687	0/0:199:198,1:198:7081:1:21:0,-57.805,-635.021	0/0:149:149,0:149:5317:0:0:0,-44.8535,-478.663	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:160:76,84:76:2709:84:3008:-222.786,0,-195.888	0/1:66:37,29:37:1332:29:1040:-74.0448,0,-100.314	0/0:108:108,0:108:3834:0:0:0,-32.5112,-345.254	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:221:117,104:117:4179:104:3732:-269.546,0,-309.765	0/0:85:85,0:85:3025:0:0:0,-25.5875,-272.48	0/1:98:51,47:51:1815:47:1692:-123.066,0,-134.13	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:91:90,1:90:3197:1:36:0,-23.7955,-284.355	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:141:67,74:67:2404:74:2656:-196.84,0,-174.171	0/1:96:42,54:42:1508:54:1922:-144.356,0,-107.116	0/1:84:43,40:43:1528:40:1421:-102.842,0,-112.423	0/1:59:19,39:19:680:39:1400:-108.48,0,-43.7097	0/1:97:47,50:47:1684:50:1767:-130.112,0,-122.647	0/0:126:124,2:124:4421:2:72:0,-31.0931,-391.225	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/1:134:56,78:56:1985:78:2800:-211.902,0,-138.585	0/1:110:62,48:62:2208:48:1724:-122.332,0,-165.872	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:96:95,0:95:3373:0:0:0,-28.5978,-303.427	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7228	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:101:44,57:44:1564:57:2040:-153.468,0,-110.646	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:10:5,5:5:172:5:180:-13.5418,0,-12.8077	0/1:62:27,35:27:953:35:1256:-94.5753,0,-67.4195	0/0:117:117,0:117:4182:0:0:0,-35.2205,-376.561	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:100:100,0:100:3556:0:0:0,-30.103,-320.242	0/0:127:124,3:124:4424:3:108:0,-28.1556,-388.254	0/0:54:54,0:54:1913:0:0:0,-16.2556,-172.432	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/0:136:136,0:136:4864:0:0:0,-40.9401,-437.914	0/0:91:88,3:88:3160:3:108:0,-17.3186,-274.549	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.261	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.217	0/1:21:9,12:9:316:12:428:-32.5372,0,-22.4572	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:71:32,39:32:1144:39:1388:-103.846,0,-81.8964	0/1:132:67,65:67:2393:65:2324:-169.455,0,-175.886	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:104:104,0:104:3712:0:0:0,-31.3071,-334.278	0/0:90:90,0:90:3196:0:0:0,-27.0927,-287.865	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	0/0:100:100,0:100:3564:0:0:0,-30.103,-320.969	0/0:87:83,0:83:2949:0:0:0,-24.9855,-265.284	0/0:118:117,1:117:4161:1:36:0,-31.9233,-371.075	0/0:117:116,1:116:4146:1:36:0,-31.6222,-369.724	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.927	0/1:105:57,48:57:2044:48:1724:-123.837,0,-152.579	0/0:160:157,3:157:5594:3:108:0,-38.0896,-493.02	0/1:67:34,33:34:1216:33:1184:-86.6993,0,-89.5776	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.155	0/0:44:44,0:44:1548:0:0:0,-13.2453,-139.609	0/1:92:40,52:40:1436:52:1859:-139.894,0,-101.843	0/1:101:36,65:36:1274:65:2331:-179.645,0,-84.5575	0/0:118:118,0:118:4204:0:0:0,-35.5215,-378.543	0/0:132:131,0:131:4679:0:0:0,-39.4349,-420.966
chr06	9122845	.	G	A	167488	PASS	AB=0.508386;ABP=5.92381;AC=143;AF=0.760638;AN=188;AO=6537;CIGAR=1X;DP=8892;DPB=8892;DPRA=0;EPP=3742.06;EPPR=2300.01;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9881;MQMR=59.9779;NS=94;NUMALT=1;ODDS=0.296009;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233600;QR=84012;RO=2354;RPL=6537;RPP=14197.9;RPPR=5114.66;RPR=0;RUN=1;SAF=1591;SAP=3742.06;SAR=4946;SRF=388;SRP=2300.01;SRR=1966;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:56:26,30:26:928:30:1052:-78.1321,0,-66.9806	1/1:57:0,57:0:0:57:2032:-183.153,-17.1587,0	0/1:29:16,13:16:557:13:464:-33.3676,0,-41.7257	0/1:25:13,12:13:460:12:432:-31.6954,0,-34.2096	1/1:45:1,43:1:36:43:1532:-134.646,-9.93196,0	0/1:45:22,23:22:788:23:820:-60.5762,0,-57.6984	0/1:44:19,25:19:680:25:878:-66.0901,0,-48.2838	0/1:30:18,12:18:624:12:419:-29.0118,0,-47.4533	0/1:438:215,223:215:7681:223:7976:-586.012,0,-559.446	1/1:124:0,124:0:0:124:4444:-400.13,-37.3277,0	0/1:101:40,61:40:1436:61:2192:-167.141,0,-99.1336	0/1:77:35,42:35:1251:42:1497:-111.843,0,-89.715	1/1:71:0,71:0:0:71:2538:-228.671,-21.3731,0	0/1:77:45,32:45:1600:32:1152:-80.8108,0,-121.111	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:166:0,166:0:0:166:5945:-535.156,-49.971,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	0/1:55:24,31:24:864:31:1112:-83.8347,0,-61.5259	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	0/1:38:16,22:16:576:22:788:-59.8057,0,-40.7358	0/1:47:22,25:22:788:25:873:-64.7361,0,-57.0964	0/1:13:7,6:7:248:6:212:-15.5114,0,-18.7508	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	1/1:59:0,59:0:0:59:2112:-190.321,-17.7608,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:48:31,17:31:1116:17:612:-40.964,0,-85.8111	0/1:24:12,12:12:420:12:428:-31.6341,0,-30.9093	1/1:31:0,31:0:0:31:1096:-98.9499,-9.33193,0	0/1:95:56,39:56:1985:39:1381:-95.9889,0,-150.325	1/1:165:0,165:0:0:165:5896:-530.747,-49.67,0	0/1:176:79,97:79:2817:97:3467:-259.261,0,-200.787	0/1:375:164,211:164:5872:211:7553:-566.922,0,-415.704	1/1:321:0,321:0:0:321:11439:-1029.39,-96.6306,0	0/1:175:93,82:93:3331:82:2929:-211.164,0,-247.327	1/1:25:0,25:0:0:25:884:-79.8784,-7.52575,0	0/1:275:142,133:142:5075:133:4772:-346.853,0,-374.111	0/1:137:65,72:65:2298:72:2584:-191.568,0,-165.837	1/1:45:0,45:0:0:45:1612:-145.369,-13.5464,0	1/1:160:0,160:0:0:160:5747:-517.343,-48.1648,0	0/1:38:10,28:10:356:28:1008:-79.5972,0,-20.9421	0/1:77:30,47:30:1076:47:1674:-127.767,0,-73.9735	0/1:79:44,35:44:1564:35:1247:-88.7519,0,-117.27	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:18:9,9:9:316:9:324:-24.0873,0,-23.3603	1/1:40:1,39:1:36:39:1367:-119.727,-8.44293,0	1/1:20:0,20:0:0:20:699:-63.2325,-6.0206,0	0/1:36:12,24:12:432:24:830:-64.1753,0,-28.3841	0/1:38:18,20:18:631:20:720:-53.6896,0,-45.6765	0/1:167:73,94:73:2624:94:3368:-253.063,0,-186.135	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:67:41,26:41:1456:26:921:-63.0362,0,-111.167	0/1:30:18,12:18:644:12:428:-29.8279,0,-49.2597	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:124:64,60:64:2292:60:2152:-156.619,0,-169.214	0/1:110:52,58:52:1872:58:2076:-153.997,0,-135.646	0/1:29:11,18:11:396:18:644:-49.5607,0,-27.2529	1/1:84:0,84:0:0:84:2993:-269.601,-25.2865,0	0/1:90:37,53:37:1320:53:1904:-144.545,0,-92.0092	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:41:3,38:3:108:38:1356:-112.265,-2.26706,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:30:0,30:0:0:30:1034:-93.365,-9.0309,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:36:0,36:0:0:36:1287:-116.133,-10.8371,0	1/1:568:1,567:1:36:567:20319:-1824.61,-167.387,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	0/1:142:73,69:73:2620:69:2473:-180.077,0,-193.301	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:30:15,15:15:532:15:540:-39.9056,0,-39.1822	0/1:50:24,26:24:852:26:890:-65.3509,0,-61.9489	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:41:0,41:0:0:41:1472:-132.748,-12.3422,0	1/1:33:0,33:0:0:33:1168:-105.427,-9.93399,0	0/1:196:98,98:98:3508:98:3500:-256.207,0,-256.928	1/1:28:1,27:1:36:27:955:-82.6666,-4.83057,0	1/1:42:0,42:0:0:42:1484:-133.855,-12.6433,0	1/1:69:0,69:0:0:69:2456:-221.295,-20.7711,0	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:83:1,82:1:36:82:2935:-260.785,-21.3872,0	0/1:94:48,46:48:1700:46:1640:-119.592,0,-124.986	1/1:137:0,137:0:0:137:4894:-440.612,-41.2411,0	0/1:25:15,10:15:527:10:356:-24.8555,0,-40.2344	1/1:88:0,88:0:0:88:3150:-283.725,-26.4906,0	1/1:86:0,86:0:0:86:3071:-276.618,-25.8886,0	1/1:575:0,575:0:0:575:20571:-1850.87,-173.092,0	0/1:824:409,415:409:14599:415:14872:-1090.16,0,-1065.6	0/1:86:60,26:60:2112:26:936:-58.6709,0,-164.459	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:130:1,129:1:36:129:4600:-410.566,-35.5356,0
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chr06	9254869	.	T	C	76377.3	PASS	AB=0.461643;ABP=31.1626;AC=140;AF=0.76087;AN=184;AO=4034;CIGAR=1X;DP=5243;DPB=5243;DPRA=23.28;EPP=8762.73;EPPR=2613.12;GTI=3;LEN=1;MEANALT=1.07778;MQM=59.945;MQMR=59.8394;NS=92;NUMALT=1;ODDS=0.92142;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133596;QR=42610;RO=1202;RPL=4034;RPP=8762.73;RPPR=2613.12;RPR=0;RUN=1;SAF=4034;SAP=8762.73;SAR=0;SRF=1202;SRP=2613.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:5,5:5:167:5:176:-13.1747,0,-12.3481	1/1:24:0,24:0:0:24:783:-70.7741,-7.22472,0	0/1:91:47,44:47:1656:44:1423:-100.96,0,-121.931	1/1:134:0,134:0:0:134:4478:-403.205,-40.338,0	0/1:12:4,8:4:144:8:263:-20.379,0,-9.70126	0/1:8:1,7:1:36:7:225:-18.1565,0,-1.19003	1/1:16:0,16:0:0:16:557:-50.4556,-4.81648,0	0/1:48:22,26:22:779:26:878:-64.8798,0,-55.8237	0/1:39:23,16:23:819:16:551:-38.1743,0,-62.2914	0/1:91:44,47:44:1567:47:1537:-111.217,0,-113.927	0/1:45:22,23:22:784:23:723:-51.82,0,-57.3376	1/1:69:0,69:0:0:69:2162:-194.06,-20.7711,0	0/1:87:50,37:50:1783:37:1200:-82.0995,0,-134.493	0/1:64:38,25:38:1332:25:816:-54.4593,0,-100.891	1/1:54:0,54:0:0:54:1826:-164.617,-16.2556,0	0/1:53:27,26:27:954:26:849:-60.7568,0,-70.2194	1/1:35:0,35:0:0:35:1101:-99.3768,-10.5361,0	1/1:32:0,32:0:0:32:1079:-97.4107,-9.63296,0	1/1:19:0,19:0:0:19:616:-55.7448,-5.71957,0	1/1:93:0,93:0:0:93:3141:-282.924,-27.9958,0	0/1:109:60,49:60:2130:49:1598:-111.287,0,-159.125	1/1:40:0,40:0:0:40:1366:-123.234,-12.0412,0	0/1:40:15,25:15:527:25:834:-63.3246,0,-35.719	0/1:55:23,32:23:824:32:1097:-82.477,0,-57.6039	0/1:25:11,14:11:396:14:474:-35.4565,0,-28.457	1/1:131:0,131:0:0:131:4317:-388.721,-39.4349,0	1/1:98:0,98:0:0:98:3232:-291.104,-29.5009,0	1/1:27:0,27:0:0:27:905:-81.7566,-8.12781,0	0/1:198:97,101:97:3435:101:3268:-234.743,0,-249.758	0/1:68:43,25:43:1519:25:837:-55.1618,0,-116.522	1/1:45:0,45:0:0:45:1466:-132.222,-13.5464,0	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:259:-23.6273,-2.40824,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:6:5,1:5:176:1:32:-1.39313,0,-14.3788	1/1:7:0,7:0:0:7:227:-20.7484,-2.10721,0	0/1:183:109,74:109:3878:74:2384:-159.682,0,-294.001	1/1:63:1,62:1:36:62:2010:-177.566,-15.3666,0	1/1:30:0,30:0:0:30:974:-87.9555,-9.0309,0	.:.:.:.:.:.:.:.	1/1:62:0,62:0:0:62:2067:-186.296,-18.6639,0	1/1:23:0,23:0:0:23:781:-70.6027,-6.92369,0	0/1:58:34,24:34:1191:24:794:-54.3058,0,-90.0318	0/1:62:32,30:32:1144:30:973:-69.2036,0,-84.6057	0/1:44:25,19:25:887:19:613:-42.2321,0,-66.9028	0/1:30:15,15:15:536:15:488:-35.2002,0,-39.5439	0/1:38:26,12:26:927:12:393:-24.2465,0,-72.3082	1/1:85:1,84:1:36:84:2813:-249.79,-21.9893,0	1/1:81:0,81:0:0:81:2785:-250.894,-24.3834,0	0/1:68:36,32:36:1270:32:1090:-77.9338,0,-94.1127	0/1:68:36,32:36:1296:32:1099:-78.7419,0,-96.4705	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	1/1:30:0,30:0:0:30:1025:-92.5522,-9.0309,0	1/1:20:0,20:0:0:20:632:-57.1788,-6.0206,0	0/1:14:9,5:9:324:5:172:-11.6036,0,-25.2914	0/1:69:38,31:38:1356:31:1053:-74.3028,0,-101.569	1/1:14:0,14:0:0:14:447:-40.5373,-4.21442,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:5,6:5:180:6:208:-15.7478,0,-13.2407	0/1:35:24,11:24:842:11:387:-24.6299,0,-65.561	1/1:95:0,95:0:0:95:3071:-276.628,-28.5979,0	0/1:6:5,1:5:171:1:32:-1.39313,0,-13.9193	1/1:176:0,176:0:0:176:5891:-530.334,-52.9813,0	1/1:62:1,60:1:36:60:1980:-174.865,-15.1244,0	1/1:52:0,52:0:0:52:1702:-153.456,-15.6536,0	1/1:32:0,32:0:0:32:1077:-97.232,-9.63296,0	1/1:99:4,94:4:144:94:3146:-270.089,-16.4273,0	1/1:74:0,74:0:0:74:2391:-215.445,-22.2762,0	1/1:28:0,28:0:0:28:928:-83.8208,-8.42884,0	1/1:15:0,15:0:0:15:499:-45.2281,-4.51545,0	1/1:36:0,35:0:0:35:1136:-102.324,-10.5361,0	0/1:23:14,9:14:496:9:286:-19.1249,0,-38.0506	1/1:26:0,26:0:0:26:875:-79.0568,-7.82678,0	0/1:118:59,59:59:2083:59:1969:-141.959,0,-152.146	0/1:46:23,23:23:786:23:756:-54.4966,0,-57.2039	1/1:135:0,135:0:0:135:4586:-412.916,-40.6391,0	1/1:6:0,6:0:0:6:188:-17.2277,-1.80618,0	1/1:117:0,117:0:0:117:3948:-355.526,-35.2205,0	0/1:8:7,1:7:239:1:36:-1.19004,0,-19.4345	1/1:39:1,37:1:27:37:1246:-109.711,-9.03431,0	1/1:61:0,60:0:0:60:1993:-179.317,-18.0618,0	1/1:121:1,120:1:36:120:4084:-364.159,-32.8264,0	1/1:50:0,50:0:0:50:1607:-144.9,-15.0515,0	1/1:60:0,60:0:0:60:1969:-177.482,-18.0618,0	0/1:61:31,30:31:1099:30:961:-68.4207,0,-80.8566	1/1:113:1,111:1:36:111:3606:-321.241,-30.3972,0	0/1:16:11,5:11:396:5:157:-9.62303,0,-31.1663	1/1:50:0,50:0:0:50:1632:-147.157,-15.0515,0	1/1:96:1,95:1:36:95:3146:-279.775,-25.3006,0	1/1:36:0,36:0:0:36:1208:-109.017,-10.8371,0	0/1:120:57,63:57:2022:63:2071:-150.534,0,-146.124	0/1:71:51,20:51:1828:20:650:-37.4356,0,-143.428	1/1:127:1,126:1:36:126:4237:-377.93,-34.6325,0	1/1:89:0,89:0:0:89:2904:-261.437,-26.7917,0
chr06	9258879	.	C	T	191841	PASS	AB=0.518812;ABP=15.4285;AC=146;AF=0.776596;AN=188;AO=8855;CIGAR=1X;DP=10814;DPB=10814;DPRA=0;EPP=19231.4;EPPR=4243.9;GTI=4;LEN=1;MEANALT=1.06383;MQM=59.6641;MQMR=59.9462;NS=94;NUMALT=1;ODDS=1.89378;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=316640;QR=69765;RO=1953;RPL=0;RPP=19231.4;RPPR=4243.9;RPR=8855;RUN=1;SAF=8855;SAP=19231.4;SAR=0;SRF=1953;SRP=4243.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:15,26:15:540:26:923:-70.9249,0,-36.5943	1/1:88:0,88:0:0:88:3143:-283.083,-26.4906,0	0/1:182:91,90:91:3256:90:3228:-235.779,0,-238.412	1/1:352:0,351:0:0:351:12561:-1129.71,-105.662,0	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	0/1:19:4,15:4:144:15:536:-42.8552,0,-7.59405	1/1:144:0,143:0:0:143:5103:-458.981,-43.0473,0	0/1:104:50,54:50:1796:54:1929:-142.455,0,-130.579	0/1:167:63,104:63:2260:104:3699:-282.781,0,-153.391	0/1:95:39,56:39:1391:56:2004:-152.024,0,-96.8904	0/1:83:47,36:47:1680:36:1292:-90.8833,0,-126.445	1/1:143:1,142:1:36:142:5079:-453.612,-39.449,0	0/1:88:55,33:55:1968:33:1175:-79.5596,0,-150.904	0/1:75:34,41:34:1202:41:1460:-109.11,0,-85.907	1/1:124:1,123:1:36:123:4428:-394.975,-33.7294,0	0/1:88:38,50:38:1356:50:1788:-134.632,0,-95.8498	1/1:52:0,52:0:0:52:1868:-168.378,-15.6536,0	1/1:34:0,34:0:0:34:1224:-110.464,-10.235,0	1/1:43:0,43:0:0:43:1544:-139.246,-12.9443,0	1/1:183:0,183:0:0:183:6549:-589.454,-55.0885,0	0/1:254:102,152:102:3631:152:5419:-411.198,0,-250.535	1/1:60:0,60:0:0:60:2136:-192.507,-18.0618,0	0/1:133:72,61:72:2580:61:2163:-154.811,0,-192.412	0/1:67:36,31:36:1284:31:1107:-79.7665,0,-95.6944	0/1:77:33,44:33:1172:44:1562:-117.675,0,-82.6082	1/1:361:0,361:0:0:361:12896:-1160.08,-108.672,0	1/1:458:1,457:1:36:457:16378:-1469.94,-134.273,0	1/1:56:1,55:1:36:55:1976:-174.497,-13.2594,0	0/1:345:179,165:179:6412:165:5912:-428.294,0,-473.39	0/1:127:47,80:47:1688:80:2858:-219.19,0,-113.976	1/1:136:0,136:0:0:136:4880:-439.341,-40.9401,0	0/1:5:3,2:3:108:2:72:-5.32673,0,-8.57002	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:21:14,7:14:504:7:243:-15.8825,0,-39.3765	1/1:6:0,6:0:0:6:212:-19.4246,-1.80618,0	0/1:244:121,123:121:4340:123:4402:-322.831,0,-317.321	1/1:119:0,119:0:0:119:4235:-381.305,-35.8226,0	1/1:73:0,73:0:0:73:2624:-236.387,-21.9752,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	1/1:224:1,223:1:36:223:7960:-712.779,-63.8324,0	1/1:39:0,39:0:0:39:1388:-125.214,-11.7402,0	0/1:82:39,43:39:1392:43:1536:-113.844,0,-100.895	0/1:58:32,26:32:1152:26:932:-66.7368,0,-86.5281	0/1:62:34,28:34:1207:28:999:-71.556,0,-90.2714	0/1:129:55,74:55:1943:74:2638:-198.827,0,-136.313	0/1:96:61,35:61:2188:35:1256:-84.4431,0,-168.286	1/1:199:0,199:0:0:199:7108:-639.739,-59.905,0	1/1:140:0,140:0:0:140:4986:-448.848,-42.1442,0	0/1:142:71,71:71:2528:71:2533:-185.458,0,-185.026	0/1:149:71,78:71:2527:78:2780:-205.528,0,-182.828	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:134:0,134:0:0:134:4762:-428.723,-40.338,0	1/1:97:0,97:0:0:97:3480:-313.404,-29.1999,0	1/1:3:0,3:0:0:3:108:-10.0717,-0.90309,0	0/1:180:66,114:66:2367:114:4094:-314.423,0,-159.102	1/1:45:0,45:0:0:45:1608:-145.004,-13.5464,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:114:51,63:51:1832:63:2235:-166.839,0,-130.843	1/1:130:2,128:2:72:128:4580:-405.509,-32.2972,0	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	1/1:280:0,280:0:0:280:10052:-904.5,-84.2884,0	1/1:194:0,194:0:0:194:6945:-625.099,-58.3998,0	1/1:72:0,72:0:0:72:2571:-231.584,-21.6742,0	1/1:86:0,86:0:0:86:3084:-277.514,-25.8886,0	1/1:195:0,195:0:0:195:6966:-626.981,-58.7009,0	1/1:212:2,210:2:72:210:7522:-669.979,-56.9816,0	1/1:58:0,58:0:0:58:2075:-186.991,-17.4597,0	1/1:126:0,126:0:0:126:4490:-404.247,-37.9298,0	1/1:65:0,65:0:0:65:2336:-210.497,-19.567,0	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	1/1:173:0,173:0:0:173:6189:-557.053,-52.0782,0	0/1:223:102,120:102:3630:120:4292:-319.388,0,-259.857	0/1:216:100,116:100:3567:116:4136:-307.359,0,-256.154	1/1:235:0,235:0:0:235:8411:-756.969,-70.7421,0	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	1/1:111:0,111:0:0:111:3959:-356.494,-33.4143,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:145:0,145:0:0:145:5208:-467.854,-43.6494,0	1/1:129:0,129:0:0:129:4618:-415.717,-38.8329,0	1/1:338:1,337:1:36:337:12007:-1076.58,-98.1499,0	1/1:78:0,78:0:0:78:2796:-251.857,-23.4803,0	1/1:92:0,92:0:0:92:3308:-297.928,-27.6948,0	0/1:53:28,25:28:991:25:887:-64.1912,0,-73.5489	1/1:179:0,179:0:0:179:6396:-575.693,-53.8844,0	0/1:33:20,12:20:712:12:420:-28.1328,0,-54.4141	1/1:98:1,97:1:36:97:3480:-309.799,-25.9027,0	1/1:107:0,107:0:0:107:3840:-345.782,-32.2102,0	1/1:49:0,49:0:0:49:1752:-157.944,-14.7505,0	0/1:128:72,56:72:2575:56:2000:-141.733,0,-193.337	0/1:87:58,29:58:2046:29:1031:-66.906,0,-158.221	1/1:145:1,144:1:36:144:5158:-460.741,-40.0511,0	1/1:131:1,130:1:36:130:4659:-415.856,-35.8367,0
chr06	9259229	.	A	G	54697.5	PASS	AB=0.520913;ABP=20.8121;AC=43;AF=0.233696;AN=184;AO=2475;CIGAR=1X;DP=11598;DPB=11598;DPRA=1.2443;EPP=5377.4;EPPR=19789.5;GTI=2;LEN=1;MEANALT=1.01818;MQM=59.9842;MQMR=59.9895;NS=92;NUMALT=1;ODDS=9.0229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86169;QR=322173;RO=9120;RPL=1295;RPP=14.6134;RPPR=26.786;RPR=1180;RUN=1;SAF=1295;SAP=14.6134;SAR=1180;SRF=4720;SRP=27.3917;SRR=4400;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:38,23:38:1348:23:803:-54.2255,0,-103.257	0/0:100:100,0:100:3551:0:0:0,-30.103,-319.8	0/1:139:69,70:69:2426:70:2405:-174.861,0,-176.753	0/0:297:296,1:296:10472:1:36:0,-85.8076,-938.813	0/1:38:20,18:20:712:18:612:-43.9584,0,-52.9675	0/1:42:20,22:20:680:22:774:-57.3382,0,-48.864	0/0:132:132,0:132:4686:0:0:0,-39.736,-421.904	0/1:184:95,89:95:3365:89:3103:-224.11,0,-247.678	0/1:164:89,75:89:3170:75:2635:-188.028,0,-236.155	0/1:158:73,85:73:2566:85:2949:-218.083,0,-183.628	0/1:95:56,39:56:1991:39:1321:-90.5837,0,-150.866	0/0:191:191,0:191:6673:0:0:0,-57.4967,-600.659	0/1:143:63,80:63:2211:80:2793:-208.566,0,-156.205	0/1:104:52,52:52:1822:52:1793:-130.343,0,-132.953	0/0:142:142,0:142:4980:0:0:0,-42.7463,-448.352	0/1:90:39,51:39:1388:51:1742:-129.967,0,-98.1262	0/0:89:89,0:89:3143:0:0:0,-26.7917,-283.096	0/0:62:62,0:62:2176:0:0:0,-18.6639,-195.915	0/0:55:55,0:55:1947:0:0:0,-16.5566,-175.505	0/0:168:168,0:168:5920:0:0:0,-50.573,-532.913	0/1:223:99,124:99:3515:124:4359:-325.357,0,-249.432	0/0:92:92,0:92:3224:0:0:0,-27.6948,-290.383	0/1:141:69,72:69:2433:72:2543:-186.674,0,-176.78	0/1:79:36,43:36:1259:43:1481:-109.797,0,-89.8302	0/1:95:50,45:50:1760:45:1595:-115.242,0,-130.086	0/0:360:359,1:359:12693:1:36:0,-104.773,-1138.61	0/0:234:234,0:234:8299:0:0:0,-70.441,-746.927	0/0:70:70,0:70:2464:0:0:0,-21.0721,-222.013	0/1:367:181,186:181:6412:186:6544:-478.575,0,-466.696	0/1:157:63,94:63:2229:94:3258:-246.184,0,-153.611	0/0:143:143,0:143:5055:0:0:0,-43.0473,-455.1	1/1:6:0,6:0:0:6:193:-17.6856,-1.80618,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:2,8:2:72:8:275:-22.0732,0,-3.82642	.:.:.:.:.:.:.:.	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:313:156,157:156:5501:157:5424:-394.081,0,-400.997	0/0:128:128,0:128:4533:0:0:0,-38.5318,-408.141	0/0:79:79,0:79:2780:0:0:0,-23.7814,-250.441	.:.:.:.:.:.:.:.	0/0:176:175,1:175:6156:1:32:0,-49.782,-550.949	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/1:134:57,77:57:2006:77:2656:-198.925,0,-140.475	0/1:109:49,60:49:1715:60:2076:-154.297,0,-121.822	0/1:96:45,51:45:1576:51:1747:-128.607,0,-113.229	0/1:122:61,61:61:2167:61:2137:-155.871,0,-158.571	0/1:122:58,64:58:2052:64:2261:-167.026,0,-148.224	0/0:160:160,0:160:5662:0:0:0,-48.1648,-509.704	0/0:130:128,2:128:4524:2:68:0,-32.6762,-400.684	0/1:173:67,106:67:2360:106:3718:-282.744,0,-160.578	0/1:84:43,41:43:1519:41:1424:-103.167,0,-111.716	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/0:93:93,0:93:3266:0:0:0,-27.9958,-294.159	0/0:74:74,0:74:2555:0:0:0,-22.2762,-230.197	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:172:81,91:81:2863:91:3204:-236.805,0,-206.132	0/0:45:45,0:45:1574:0:0:0,-13.5463,-141.949	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:13:4,9:4:144:9:311:-24.4103,0,-9.40023	0/1:128:69,59:69:2406:59:2055:-146.687,0,-178.264	0/0:141:140,1:140:4912:1:36:0,-38.847,-438.639	0/0:12:11,1:11:396:1:32:0,-0.413047,-32.7834	0/0:318:317,1:317:11283:1:36:0,-92.1293,-1011.76	0/0:243:241,2:241:8524:2:68:0,-66.6926,-760.711	0/0:118:118,0:118:4173:0:0:0,-35.5215,-375.756	0/0:108:107,1:107:3789:1:36:0,-28.913,-337.612	0/0:227:227,0:227:8070:0:0:0,-68.3338,-726.322	0/0:180:179,0:179:6331:0:0:0,-53.8844,-569.531	0/0:79:79,0:79:2798:0:0:0,-23.7814,-252.061	0/0:64:64,0:64:2278:0:0:0,-19.2659,-205.281	0/0:65:64,1:64:2284:1:36:0,-15.9687,-202.224	0/1:30:8,22:8:288:22:779:-61.4012,0,-17.2365	0/0:122:122,0:122:4313:0:0:0,-36.7257,-388.35	0/1:145:68,76:68:2417:76:2656:-195.619,0,-174.116	0/1:212:103,109:103:3657:109:3789:-277.396,0,-265.517	0/0:184:184,0:184:6533:0:0:0,-55.3895,-588.055	0/0:68:68,0:68:2390:0:0:0,-20.47,-215.355	0/0:191:186,5:186:6601:5:172:0,-41.6788,-578.358	0/1:24:9,15:9:311:15:523:-40.1737,0,-21.099	0/0:84:84,0:84:2951:0:0:0,-25.2865,-265.824	0/0:104:103,0:103:3628:0:0:0,-31.0061,-326.408	0/0:322:321,1:321:11342:1:36:0,-93.3334,-1017.08	0/0:105:105,0:105:3616:0:0:0,-31.6081,-325.646	0/0:92:92,0:92:3283:0:0:0,-27.6948,-295.69	0/1:104:58,46:58:2028:46:1616:-114.422,0,-151.481	0/0:258:253,5:253:8952:5:161:0,-62.8592,-790.868	0/1:63:30,33:30:1063:33:1139:-83.8496,0,-77.0159	0/0:119:119,0:119:4186:0:0:0,-35.8226,-376.925	0/0:124:124,0:124:4383:0:0:0,-37.3277,-394.646	0/0:62:62,0:62:2171:0:0:0,-18.6639,-195.655	0/1:182:104,78:104:3666:78:2695:-188.009,0,-275.357	0/1:148:49,99:49:1748:99:3432:-264.547,0,-113.052	0/0:211:210,1:210:7428:1:36:0,-59.9191,-664.974	0/0:215:215,0:215:7624:0:0:0,-64.7214,-685.715
chr06	9259304	.	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chr06	9343525	.	C	G	23690.9	PASS	AB=0.470135;ABP=27.135;AC=42;AF=0.225806;AN=186;AO=1472;CIGAR=1X;DP=8311;DPB=8311;DPRA=0.942924;EPP=3199.42;EPPR=14825.5;GTI=3;LEN=1;MEANALT=1.14286;MQM=59.9932;MQMR=59.9959;NS=93;NUMALT=1;ODDS=1.46145;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52513;QR=244162;RO=6826;RPL=1472;RPP=3199.42;RPPR=14825.5;RPR=0;RUN=1;SAF=0;SAP=3199.42;SAR=1472;SRF=0;SRP=14825.5;SRR=6826;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:21,18:21:748:18:625:-44.8329,0,-55.9051	0/0:127:126,1:126:4471:1:36:0,-34.6325,-398.96	0/1:114:58,56:58:2076:56:1992:-145.237,0,-152.793	0/0:161:160,1:160:5728:1:36:0,-44.8676,-512.039	0/1:32:21,11:21:748:11:376:-24.5363,0,-58.0123	0/1:37:16,21:16:576:21:752:-56.8681,0,-41.0369	0/0:135:134,1:134:4785:1:36:0,-37.0408,-427.208	0/1:138:78,60:78:2792:60:2138:-151.146,0,-209.978	0/1:64:36,28:36:1292:28:1000:-71.0495,0,-97.3178	0/1:70:30,40:30:1072:40:1424:-107.385,0,-75.7194	0/1:46:22,24:22:784:24:860:-63.8745,0,-57.0365	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/1:68:36,32:36:1292:32:1148:-83.1598,0,-96.1137	0/1:55:30,25:30:1071:25:892:-64.043,0,-80.145	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/1:43:23,20:23:824:20:710:-51.2816,0,-61.539	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:187:184,1:184:6576:1:36:0,-52.4521,-588.325	0/1:167:92,74:92:3288:74:2644:-187.876,0,-245.809	0/0:132:132,0:132:4721:0:0:0,-39.736,-425.048	0/1:35:20,15:20:712:15:536:-38.0388,0,-53.8706	0/1:109:59,49:59:2112:49:1764:-126.173,0,-157.478	0/1:47:30,17:30:1076:17:612:-41.265,0,-83.0044	0/0:281:280,0:280:10017:0:0:0,-84.2884,-901.105	0/0:199:198,0:198:7088:0:0:0,-59.6039,-637.66	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:243:133,109:133:4760:109:3892:-277.305,0,-355.388	0/1:159:86,72:86:3061:72:2580:-184.527,0,-227.796	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:5:2,3:2:72:3:93:-7.17158,0,-5.33157	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:181:91,90:91:3268:90:3219:-235.445,0,-239.853	0/0:295:295,0:295:10576:0:0:0,-88.8038,-951.751	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	.:.:.:.:.:.:.:.	0/0:182:180,1:180:6426:1:36:0,-51.248,-574.828	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:150:101,48:101:3620:48:1715:-109.422,0,-280.792	0/1:62:38,24:38:1356:24:856:-58.6972,0,-103.677	0/1:48:24,24:24:864:24:852:-62.55,0,-63.6331	0/1:106:57,49:57:2044:49:1760:-126.775,0,-152.323	0/1:96:47,49:47:1669:49:1748:-128.705,0,-121.596	0/0:226:226,0:226:8089:0:0:0,-68.0328,-728.026	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:170:68,102:68:2420:102:3628:-275.552,0,-166.882	0/1:161:84,77:84:3012:77:2735:-197.927,0,-222.845	0/1:11:5,6:5:161:6:216:-16.4792,0,-11.4952	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:107:47,60:47:1688:60:2136:-160.298,0,-119.997	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:54:27,27:27:964:27:968:-71.1817,0,-70.8212	0/0:99:99,0:99:3535:0:0:0,-29.802,-318.359	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:190:189,0:189:6776:0:0:0,-56.8947,-609.552	0/0:203:202,1:202:7213:1:36:0,-57.5108,-645.627	0/0:100:100,0:100:3568:0:0:0,-30.103,-321.329	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:148:146,2:146:5205:2:72:0,-37.7157,-461.716	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/0:113:113,0:113:4035:0:0:0,-34.0164,-363.338	0/1:75:47,28:47:1684:28:1004:-68.0986,0,-129.27	0/1:128:75,53:75:2688:53:1900:-132.746,0,-203.633	0/0:179:178,0:178:6376:0:0:0,-53.5833,-573.569	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.27	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/0:79:79,0:79:2805:0:0:0,-23.7814,-252.689	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.809	0/0:192:192,0:192:6868:0:0:0,-57.7978,-618.19	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:66:32,34:32:1152:34:1224:-90.5991,0,-84.1222	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871	0/1:37:14,23:14:496:23:804:-61.539,0,-33.8362	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.231	0/0:48:47,0:47:1688:0:0:0,-14.1484,-151.847	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:64:31,33:31:1093:33:1176:-86.8818,0,-79.4117	0/1:47:18,29:18:644:29:1026:-78.5045,0,-44.1422	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.622	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934
chr06	9386757	.	T	A	103727	PASS	AB=0.518063;ABP=10.3843;AC=145;AF=0.771277;AN=188;AO=5037;CIGAR=1X;DP=6298;DPB=6298;DPRA=0;EPP=10784.9;EPPR=2644.21;GTI=2;LEN=1;MEANALT=1.04255;MQM=42.267;MQMR=59.5295;NS=94;NUMALT=1;ODDS=1.70449;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179141;QR=44671;RO=1256;RPL=5019;RPP=10784.9;RPPR=2644.21;RPR=18;RUN=1;SAF=5037;SAP=10940.7;SAR=0;SRF=1256;SRP=2730.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:19,25:19:680:25:892:-65.5768,0,-48.2537	1/1:30:0,30:0:0:30:1067:-94.1455,-9.0309,0	0/1:94:38,56:38:1334:56:1988:-146.598,0,-92.0615	1/1:111:0,111:0:0:111:3932:-342.063,-33.4143,0	0/1:13:6,7:6:212:7:248:-16.8259,0,-15.5095	0/1:18:4,14:4:140:14:500:-38.856,0,-7.52604	1/1:70:0,70:0:0:70:2496:-218.788,-21.0721,0	0/1:83:42,41:42:1478:41:1460:-103.455,0,-108.326	0/1:70:40,30:40:1406:30:1038:-69.8918,0,-105.565	0/1:50:25,25:25:888:25:896:-63.2727,0,-65.1875	0/1:53:25,27:25:892:27:959:-68.0651,0,-64.5867	1/1:106:0,105:0:0:105:3748:-328.506,-31.6082,0	0/1:78:30,48:30:1076:48:1710:-126.371,0,-73.6643	0/1:101:49,52:49:1760:52:1852:-132.946,0,-127.926	1/1:74:0,74:0:0:74:2613:-226.304,-22.2762,0	0/1:70:30,40:30:1067:40:1418:-102.858,0,-75.2691	1/1:65:0,65:0:0:65:2314:-203.944,-19.567,0	1/1:35:0,35:0:0:35:1243:-108.162,-10.5361,0	1/1:37:0,37:0:0:37:1328:-116.179,-11.1381,0	1/1:29:0,29:0:0:29:1022:-89.6588,-8.72987,0	0/1:94:42,52:42:1496:52:1868:-135.683,0,-106.629	1/1:50:0,50:0:0:50:1783:-157.382,-15.0515,0	0/1:56:21,35:21:756:35:1240:-91.2731,0,-51.5048	0/1:30:14,16:14:504:16:572:-40.8307,0,-36.6672	0/1:55:22,33:22:792:33:1164:-86.4504,0,-55.049	1/1:202:1,201:1:36:201:7199:-631.436,-57.2108,0	1/1:112:0,112:0:0:112:3959:-344.044,-33.7154,0	1/1:32:0,32:0:0:32:1131:-99.8003,-9.63296,0	0/1:109:50,59:50:1792:59:2082:-151.703,0,-128.747	0/1:83:43,40:43:1544:40:1409:-98.7645,0,-114.268	1/1:88:0,88:0:0:88:3124:-272.73,-26.4906,0	0/1:6:2,4:2:72:4:144:-11.2216,0,-5.03054	1/1:17:0,17:0:0:17:608:-53.9027,-5.11751,0	0/1:6:5,1:5:180:1:36:-1.71483,0,-14.7459	0/1:3:1,2:1:36:2:63:-4.99665,0,-2.69518	1/1:8:0,8:0:0:8:288:-25.7034,-2.40824,0	0/1:158:79,79:79:2810:79:2811:-199.419,0,-205.513	1/1:109:0,109:0:0:109:3882:-340.201,-32.8123,0	1/1:69:0,69:0:0:69:2441:-213,-20.7711,0	1/1:4:0,4:0:0:4:144:-13.0277,-1.20412,0	1/1:45:0,45:0:0:45:1607:-139.746,-13.5464,0	1/1:26:0,26:0:0:26:916:-80.9685,-7.82678,0	0/1:228:103,125:103:3649:125:4468:-321.92,0,-259.749	0/1:51:31,20:31:1090:20:703:-46.142,0,-83.0554	0/1:53:31,22:31:1108:22:784:-52.7018,0,-84.0717	0/1:74:33,41:33:1184:41:1454:-105.605,0,-84.5903	0/1:65:35,30:35:1248:30:1057:-73.3816,0,-93.0498	1/1:86:0,86:0:0:86:3080:-268.079,-25.8886,0	1/1:62:0,62:0:0:62:2220:-192.922,-18.6639,0	0/1:80:40,40:40:1423:40:1431:-99.4045,0,-104.281	0/1:25:8,17:8:284:17:612:-46.9003,0,-18.3776	0/1:2:1,1:1:36:1:36:-2.90064,0,-2.99621	1/1:78:0,78:0:0:78:2767:-244.141,-23.4803,0	1/1:51:0,51:0:0:51:1809:-159.542,-15.3525,0	0/1:11:6,5:6:212:5:176:-12.5595,0,-16.1135	0/1:69:33,36:33:1184:36:1271:-91.5339,0,-86.0788	1/1:26:0,26:0:0:26:928:-81.1492,-7.82678,0	0/1:7:4,3:4:144:3:104:-7.00595,0,-11.2064	0/1:16:6,10:6:216:10:360:-26.8216,0,-14.9722	0/1:93:49,44:49:1752:44:1570:-109.688,0,-129.838	1/1:141:0,141:0:0:141:5056:-439.424,-42.4452,0	0/1:7:5,2:5:176:2:72:-4.54792,0,-14.0745	1/1:95:0,95:0:0:95:3358:-295.171,-28.5979,0	1/1:87:1,86:1:36:86:3076:-261.85,-22.5913,0	1/1:74:0,74:0:0:74:2644:-230.99,-22.2762,0	1/1:23:0,23:0:0:23:828:-71.9439,-6.92369,0	1/1:132:0,132:0:0:132:4694:-410.35,-39.736,0	1/1:81:0,81:0:0:81:2890:-252.581,-24.3834,0	1/1:60:0,60:0:0:60:2127:-185.272,-18.0618,0	1/1:44:0,44:0:0:44:1556:-136.803,-13.2453,0	1/1:52:0,52:0:0:52:1858:-163.375,-15.6536,0	0/1:31:24,7:24:860:7:248:-12.7708,0,-68.2754	1/1:92:0,92:0:0:92:3279:-287.437,-27.6948,0	0/1:57:24,33:24:860:33:1163:-84.8499,0,-60.5412	0/1:145:73,72:73:2584:72:2563:-182.059,0,-188.987	1/1:66:0,64:0:0:64:2263:-197.316,-19.2659,0	1/1:95:0,95:0:0:95:3389:-298.442,-28.5979,0	1/1:45:1,44:1:36:44:1572:-135.133,-9.94808,0	0/1:14:5,9:5:176:9:324:-24.6578,0,-11.9623	1/1:41:0,41:0:0:41:1451:-127.663,-12.3422,0	1/1:59:0,59:0:0:59:2112:-185.465,-17.7608,0	1/1:224:0,224:0:0:224:7958:-693.385,-67.4307,0	1/1:65:0,65:0:0:65:2309:-202.326,-19.567,0	1/1:74:0,74:0:0:74:2655:-230.706,-22.2762,0	0/1:36:16,20:16:561:20:703:-50.9318,0,-39.9753	1/1:123:0,123:0:0:123:4337:-378.614,-37.0267,0	0/1:20:7,13:7:252:13:452:-33.564,0,-17.0001	1/1:83:0,82:0:0:82:2922:-256.039,-24.6845,0	1/1:80:0,80:0:0:80:2843:-248.603,-24.0824,0	1/1:65:0,65:0:0:65:2299:-202.09,-19.567,0	0/1:169:86,83:86:3047:83:2951:-207.527,0,-223.382	0/1:75:46,29:46:1602:29:1012:-66.0177,0,-121.861	1/1:78:0,78:0:0:78:2780:-240.588,-23.4803,0	1/1:95:0,95:0:0:95:3372:-294.813,-28.5979,0
chr06	9417285	.	T	G	130055	PASS	AB=0.503283;ABP=3.29546;AC=147;AF=0.781915;AN=188;AO=5928;CIGAR=1X;DP=7460;DPB=7460;DPRA=80.2043;EPP=12325.6;EPPR=3181.33;GTI=3;LEN=1;MEANALT=1.05376;MQM=59.9518;MQMR=59.9948;NS=94;NUMALT=1;ODDS=0.958298;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211634;QR=54556;RO=1527;RPL=5864;RPP=12325.6;RPPR=3181.33;RPR=64;RUN=1;SAF=0;SAP=12875.5;SAR=5928;SRF=0;SRP=3318.85;SRR=1527;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:12,43:12:428:43:1524:-120.865,0,-22.3022	1/1:54:0,54:0:0:54:1931:-174.066,-16.2556,0	0/1:123:64,59:64:2292:59:2103:-152.083,0,-169.515	1/1:152:0,152:0:0:152:5396:-485.766,-45.7566,0	0/1:43:24,19:24:841:19:680:-48.5849,0,-63.0621	0/1:34:9,25:9:324:25:896:-70.7253,0,-19.2708	1/1:49:0,49:0:0:49:1742:-157.034,-14.7505,0	0/1:106:56,50:56:1992:50:1778:-128.392,0,-147.645	0/1:86:49,37:49:1748:37:1324:-93.5735,0,-131.716	0/1:73:38,35:38:1368:35:1240:-89.9281,0,-101.446	0/1:36:16,20:16:568:20:720:-54.2917,0,-40.6148	1/1:112:0,112:0:0:112:3992:-359.469,-33.7154,0	0/1:74:36,38:36:1296:38:1345:-99.0719,0,-94.6677	0/1:58:36,22:36:1288:22:792:-54.1459,0,-98.7638	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	0/1:67:36,31:36:1292:31:1112:-80.2223,0,-96.4148	1/1:28:0,28:0:0:28:997:-90.0439,-8.42884,0	1/1:34:0,34:0:0:34:1205:-108.755,-10.235,0	1/1:28:0,27:0:0:27:968:-87.0776,-8.12781,0	1/1:73:0,73:0:0:73:2593:-233.53,-21.9752,0	0/1:150:53,97:53:1900:97:3457:-266.187,0,-126.123	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	0/1:105:48,57:48:1713:57:2035:-151.813,0,-122.846	0/1:75:36,38:36:1280:38:1355:-99.6129,0,-92.8673	0/1:42:13,29:13:453:29:1044:-81.6315,0,-28.4564	1/1:290:1,289:1:36:289:10313:-924.284,-83.7004,0	1/1:217:0,216:0:0:216:7677:-690.477,-65.0225,0	1/1:43:1,42:1:36:42:1484:-130.253,-9.34602,0	0/1:137:69,68:69:2464:68:2440:-178.614,0,-180.773	0/1:155:74,81:74:2648:81:2891:-213.756,0,-191.907	1/1:83:2,81:2:72:81:2891:-253.589,-18.1488,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:205:95,110:95:3412:110:3943:-293.35,0,-245.582	1/1:113:0,113:0:0:113:4037:-363.517,-34.0164,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:86:0,86:0:0:86:3076:-277.067,-25.8886,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:107:60,47:60:2152:47:1670:-118.376,0,-161.737	0/1:101:52,49:52:1864:49:1744:-126.611,0,-137.635	0/1:49:19,30:19:676:30:1057:-80.6885,0,-46.4175	0/1:131:68,63:68:2440:63:2256:-163.868,0,-180.42	0/1:66:34,32:34:1212:32:1135:-82.5901,0,-89.5183	1/1:135:0,135:0:0:135:4802:-432.335,-40.6391,0	1/1:57:0,57:0:0:57:2035:-183.422,-17.1587,0	0/1:65:32,33:32:1144:33:1188:-87.6616,0,-83.7026	0/1:193:130,63:130:4660:63:2240:-143.763,0,-361.462	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:111:1,110:1:36:110:3941:-351.283,-29.8161,0	1/1:61:1,60:1:36:60:2152:-190.349,-14.7646,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:116:53,63:53:1860:63:2251:-167.933,0,-132.76	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:62:31,31:31:1108:31:1116:-82.0878,0,-81.3671	1/1:102:0,102:0:0:102:3634:-327.265,-30.7051,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:120:0,120:0:0:120:4294:-386.636,-36.1236,0	1/1:168:1,167:1:36:167:5929:-530.123,-46.9748,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:239:0,239:0:0:239:8538:-768.418,-71.9462,0	1/1:138:3,134:3:108:134:4794:-421.541,-31.5258,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:101:1,100:1:36:100:3580:-318.809,-26.8058,0	0/1:84:38,46:38:1348:46:1652:-123.682,0,-96.3334	0/1:146:57,89:57:2021:89:3174:-241.933,0,-138.211	1/1:147:0,147:0:0:147:5270:-474.434,-44.2514,0	1/1:76:0,76:0:0:76:2699:-243.144,-22.8783,0	1/1:64:2,62:2:72:62:2224:-193.587,-12.4292,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	1/1:60:0,60:0:0:60:2134:-192.327,-18.0618,0	1/1:165:0,164:0:0:164:5823:-523.975,-49.3689,0	1/1:86:0,86:0:0:86:3079:-277.337,-25.8886,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:40:24,16:24:864:16:567:-39.3195,0,-66.0414	1/1:119:1,118:1:36:118:4223:-376.651,-32.2243,0	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3053	1/1:82:0,82:0:0:82:2921:-263.124,-24.6845,0	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:94:48,46:48:1708:46:1633:-118.96,0,-125.709	0/1:98:70,28:70:2504:28:1004:-61.1749,0,-196.112	1/1:125:0,125:0:0:125:4466:-402.111,-37.6288,0	1/1:104:0,104:0:0:104:3710:-334.102,-31.3071,0
chr06	9466568	.	T	C	18723.7	PASS	AB=0.471446;ABP=20.4955;AC=42;AF=0.225806;AN=186;AO=1178;CIGAR=1X;DP=6793;DPB=6793;DPRA=0.804891;EPP=2509.15;EPPR=12195.8;GTI=7;LEN=1;MEANALT=1;MQM=59.9856;MQMR=59.9947;NS=93;NUMALT=1;ODDS=0.0541403;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41553;QR=199147;RO=5615;RPL=1172;RPP=2509.15;RPPR=12195.8;RPR=6;RUN=1;SAF=1178;SAP=2561;SAR=0;SRF=5615;SRP=12195.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:129:129,0:129:4587:0:0:0,-38.8329,-412.995	0/1:53:33,20:33:1167:20:711:-48.3611,0,-89.3818	0/0:133:133,0:133:4719:0:0:0,-40.037,-424.871	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:24:14,10:14:492:10:360:-25.5196,0,-37.3876	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/1:116:64,52:64:2283:52:1839:-130.869,0,-170.812	0/1:59:34,25:34:1206:25:877:-61.4844,0,-91.0837	0/1:121:63,58:63:2227:58:2045:-147.895,0,-164.27	0/1:31:21,10:21:743:10:352:-22.6863,0,-57.8614	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/1:71:34,37:34:1174:37:1310:-96.8278,0,-84.5894	0/1:69:39,30:39:1364:30:1049:-73.9471,0,-102.285	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/1:39:17,22:17:612:22:771:-57.9701,0,-43.6733	0/0:61:61,0:61:2124:0:0:0,-18.3628,-191.427	0/0:86:86,0:86:3026:0:0:0,-25.8886,-272.57	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:144:144,0:144:5120:0:0:0,-43.3483,-460.944	0/1:174:81,93:81:2884:93:3278:-242.861,0,-207.418	0/0:55:55,0:55:1944:0:0:0,-16.5566,-175.234	0/1:20:15,5:15:528:5:180:-10.5315,0,-41.8308	0/1:28:20,8:20:720:8:288:-17.8386,0,-56.6999	0/1:31:21,10:21:748:10:356:-23.0493,0,-58.3134	0/0:233:233,0:233:8278:0:0:0,-70.14,-745.035	0/0:122:122,0:122:4337:0:0:0,-36.7257,-390.504	0/0:41:41,0:41:1448:0:0:0,-12.3422,-130.616	0/1:137:88,49:88:3152:49:1721:-113.929,0,-242.664	0/1:163:78,85:78:2767:85:3024:-223.32,0,-200.204	0/0:115:115,0:115:4094:0:0:0,-34.6184,-368.647	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/1:4:3,1:3:93:1:36:-2.39415,0,-7.47261	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:191:90,101:90:3176:101:3558:-262.933,0,-228.568	0/0:128:128,0:128:4579:0:0:0,-38.5318,-412.275	0/0:40:40,0:40:1422:0:0:0,-12.0412,-128.276	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:140:140,0:140:4979:0:0:0,-42.1442,-448.259	0/0:27:27,0:27:950:0:0:0,-8.12781,-85.8134	0/1:82:50,32:50:1753:32:1121:-76.5113,0,-133.367	0/1:52:25,27:25:891:27:933:-68.6274,0,-64.8552	0/1:58:27,31:27:951:31:1096:-81.4902,0,-68.4446	0/1:41:23,18:23:803:18:644:-45.9484,0,-60.2461	0/1:65:36,29:36:1292:29:1026:-73.0844,0,-97.0168	0/0:106:104,2:104:3682:2:72:0,-25.0725,-324.749	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.078	0/1:156:69,87:69:2453:87:3076:-230.109,0,-174.063	0/1:73:44,29:44:1584:29:1023:-70.4065,0,-120.876	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:70:70,0:70:2478:0:0:0,-21.0721,-223.273	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:7:2,5:2:68:5:172:-13.7098,0,-4.3505	0/1:81:44,37:44:1568:37:1293:-92.2859,0,-117.028	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:46:27,19:27:968:19:658:-45.6945,0,-73.59	0/0:96:95,1:95:3370:1:36:0,-25.3006,-299.919	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:207:207,0:207:7383:0:0:0,-62.3132,-664.518	0/0:155:155,0:155:5490:0:0:0,-46.6596,-494.23	0/0:87:87,0:87:3095:0:0:0,-26.1896,-278.778	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/0:110:110,0:110:3911:0:0:0,-33.1133,-352.182	0/0:94:92,2:92:3270:2:72:0,-21.4601,-287.682	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:53:53,0:53:1878:0:0:0,-15.9546,-169.297	0/0:96:95,1:95:3350:1:36:0,-25.3006,-298.122	0/1:23:8,15:8:275:15:514:-39.6596,0,-18.1598	0/0:89:89,0:89:3167:0:0:0,-26.7917,-285.255	0/1:78:45,33:45:1593:33:1172:-82.3072,0,-120.178	0/1:87:48,39:48:1692:39:1346:-95.2441,0,-126.374	0/0:157:157,0:157:5596:0:0:0,-47.2617,-503.763	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:117:114,3:114:4061:3:108:0,-25.1453,-355.602	0/1:16:5,11:5:171:11:396:-31.1663,0,-10.909	0/0:83:82,1:82:2886:1:36:0,-21.3872,-256.377	0/0:75:73,2:73:2593:2:72:0,-15.7405,-226.781	0/0:127:127,0:127:4509:0:0:0,-38.2308,-405.98	0/0:92:92,0:92:3224:0:0:0,-27.6948,-290.385	0/0:45:45,0:45:1564:0:0:0,-13.5463,-141.029	0/1:96:56,40:56:1987:40:1423:-99.4678,0,-150.205	0/0:131:131,0:131:4579:0:0:0,-39.4349,-412.284	0/1:29:17,12:17:604:12:428:-30.1289,0,-45.9607	0/0:62:62,0:62:2182:0:0:0,-18.6639,-196.646	0/0:61:61,0:61:2149:0:0:0,-18.3628,-193.676	0/0:25:25,0:25:870:0:0:0,-7.52575,-78.6146	0/1:57:26,31:26:924:31:1102:-82.3319,0,-66.3189	0/1:56:15,41:15:532:41:1439:-112.947,0,-31.3554	0/0:119:119,0:119:4233:0:0:0,-35.8226,-381.122	0/0:94:94,0:94:3294:0:0:0,-28.2968,-296.681
chr06	9466597	.	A	G	19731.7	PASS	AB=0.468875;ABP=24.0977;AC=41;AF=0.22043;AN=186;AO=1186;CIGAR=1X;DP=6479;DPB=6479;DPRA=0.921121;EPP=2526.52;EPPR=11496.6;GTI=2;LEN=1;MEANALT=1;MQM=59.9865;MQMR=60;NS=93;NUMALT=1;ODDS=4.59439;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42268;QR=189202;RO=5293;RPL=8;RPP=2509.36;RPPR=11289.1;RPR=1178;RUN=1;SAF=14;SAP=2458.21;SAR=1172;SRF=24;SRP=11289.1;SRR=5269;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:114:63,51:63:2256:51:1814:-129.223,0,-168.985	0/0:171:171,0:171:6111:0:0:0,-51.4761,-550.091	0/1:14:3,11:3:104:11:396:-31.7683,0,-5.48839	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:67:67,0:67:2403:0:0:0,-20.169,-216.526	0/1:77:52,25:52:1857:25:885:-56.7881,0,-144.228	0/1:103:64,39:64:2304:39:1390:-94.3919,0,-176.614	0/1:89:36,53:36:1288:53:1896:-144.126,0,-89.4319	0/1:53:24,29:24:856:29:1030:-77.0577,0,-61.4065	0/0:107:107,0:107:3813:0:0:0,-32.2102,-343.367	0/1:71:38,33:38:1356:33:1161:-83.4222,0,-100.967	0/1:64:42,22:42:1508:22:784:-51.618,0,-116.749	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.099	0/1:69:39,30:39:1396:30:1068:-75.661,0,-105.168	0/0:45:45,0:45:1588:0:0:0,-13.5463,-143.208	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:124:124,0:124:4440:0:0:0,-37.3277,-399.771	0/1:96:45,51:45:1605:51:1819:-135.092,0,-115.839	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/1:57:34,23:34:1224:23:828:-57.6854,0,-93.3083	0/1:70:33,37:33:1184:37:1324:-98.3866,0,-85.7962	0/1:26:13,13:13:468:13:459:-33.8173,0,-34.6329	0/0:197:197,0:197:7028:0:0:0,-59.3029,-632.583	0/0:167:167,0:167:5958:0:0:0,-50.272,-536.328	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:137:68,69:68:2444:69:2457:-180.142,0,-178.973	0/1:78:38,40:38:1364:40:1421:-104.705,0,-99.5804	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/1:178:99,79:99:3535:79:2813:-199.826,0,-264.776	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	.:.:.:.:.:.:.:.	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:39:17,22:17:612:22:783:-59.0528,0,-43.6733	0/1:53:22,31:22:784:31:1116:-84.7971,0,-54.9293	0/1:60:34,26:34:1220:26:932:-66.1371,0,-92.045	0/1:92:55,37:55:1937:37:1297:-89.3338,0,-146.91	0/1:65:43,22:43:1535:22:788:-51.6778,0,-118.875	0/0:102:101,1:101:3597:1:36:0,-27.1068,-320.338	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/1:77:38,39:38:1341:39:1404:-103.48,0,-97.8087	0/1:128:74,54:74:2644:54:1940:-136.344,0,-199.675	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:87:87,0:87:3083:0:0:0,-26.1896,-277.697	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.477	0/1:10:4,6:4:140:6:201:-15.4067,0,-9.93428	0/1:97:53,44:53:1895:44:1569:-112.3,0,-141.627	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:15:5,10:5:180:10:345:-26.8654,0,-12.0366	0/1:70:38,32:38:1356:32:1139:-81.7463,0,-101.268	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:177:177,0:177:6340:0:0:0,-53.2823,-570.688	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.817	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.585	0/0:95:93,2:93:3328:2:72:0,-21.7611,-292.901	0/0:101:99,2:99:3540:2:72:0,-23.5673,-311.973	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:57:57,0:57:2019:0:0:0,-17.1587,-181.983	0/1:25:14,11:14:496:11:392:-28.0943,0,-37.4485	0/0:116:116,0:116:4155:0:0:0,-34.9195,-374.132	0/1:75:37,38:37:1315:38:1359:-100.033,0,-96.0738	0/1:81:46,35:46:1648:35:1247:-88.1506,0,-124.225	0/0:148:148,0:148:5304:0:0:0,-44.5524,-477.494	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:121:121,0:121:4317:0:0:0,-36.4246,-388.706	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:80:80,0:80:2854:0:0:0,-24.0824,-257.097	0/1:48:26,22:26:936:22:792:-57.1562,0,-70.11	0/0:124:123,1:123:4385:1:36:0,-33.7294,-391.225	0/1:21:15,6:15:540:6:212:-13.1032,0,-42.6149	0/0:66:66,0:66:2335:0:0:0,-19.868,-210.407	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:137:79,58:79:2828:58:2055:-143.98,0,-213.518	0/1:57:14,43:14:500:43:1536:-121.374,0,-28.1775	0/0:83:83,0:83:2955:0:0:0,-24.9855,-266.184	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151
chr06	9466636	.	C	T	18225.7	PASS	AB=0.462306;ABP=33.9505;AC=41;AF=0.22043;AN=186;AO=1171;CIGAR=1X;DP=6529;DPB=6529;DPRA=0.914518;EPP=2545.8;EPPR=11583.5;GTI=3;LEN=1;MEANALT=1.04545;MQM=59.9863;MQMR=59.9697;NS=93;NUMALT=1;ODDS=4.46008;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41201;QR=191049;RO=5353;RPL=1171;RPP=2545.8;RPPR=11583.5;RPR=0;RUN=1;SAF=0;SAP=2545.8;SAR=1171;SRF=0;SRP=11626.9;SRR=5353;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.759	0/1:116:65,51:65:2321:51:1779:-125.467,0,-174.229	0/0:173:173,0:173:6133:0:0:0,-52.0782,-552.068	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/1:68:51,17:51:1828:17:593:-33.2247,0,-144.331	0/1:100:64,36:64:2285:36:1273:-84.7679,0,-175.807	0/1:89:36,53:36:1296:53:1874:-142.143,0,-90.1523	0/1:51:24,27:24:849:27:972:-72.4454,0,-61.3753	0/0:107:107,0:107:3831:0:0:0,-32.2102,-344.986	0/1:72:39,32:39:1404:32:1137:-80.9042,0,-104.926	0/1:64:41,23:41:1457:23:802:-53.2298,0,-112.158	0/0:86:85,0:85:3060:0:0:0,-25.5875,-275.268	0/1:67:38,29:38:1368:29:1022:-72.121,0,-103.252	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:124:124,0:124:4441:0:0:0,-37.3277,-399.859	0/1:100:47,53:47:1673:53:1889:-140.183,0,-120.752	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:59:37,22:37:1317:22:758:-50.7734,0,-101.069	0/1:69:32,37:32:1152:37:1283:-94.9934,0,-83.2191	0/1:23:12,11:12:424:11:381:-27.6969,0,-31.5727	0/0:201:201,0:201:7156:0:0:0,-60.507,-644.094	0/0:166:166,0:166:5930:0:0:0,-49.971,-533.806	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:139:69,70:69:2446:70:2437:-177.736,0,-178.549	0/1:78:38,40:38:1349:40:1356:-98.8467,0,-98.2279	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.738	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:179:101,78:101:3583:78:2785:-197.005,0,-268.79	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	.:.:.:.:.:.:.:.	0/0:73:73,0:73:2586:0:0:0,-21.9752,-232.987	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:40:18,22:18:648:22:747:-55.4986,0,-46.6103	0/1:55:24,31:24:864:31:1093:-82.121,0,-61.5259	0/1:61:34,27:34:1209:27:957:-68.081,0,-90.7513	0/1:88:52,36:52:1853:36:1273:-88.3627,0,-140.557	0/1:66:43,23:43:1544:23:813:-53.6211,0,-119.385	0/0:106:104,2:104:3724:2:57:0,-26.4959,-329.948	0/0:110:110,0:110:3929:0:0:0,-33.1133,-353.801	0/1:78:39,39:39:1385:39:1355:-98.7618,0,-101.467	0/1:130:73,56:73:2559:56:2004:-141.588,0,-191.512	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.035	0/0:37:37,0:37:1294:0:0:0,-11.1381,-116.757	0/1:11:5,6:5:180:6:201:-15.1057,0,-11.7605	0/1:98:53,45:53:1889:45:1574:-112.445,0,-140.785	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	1/1:5:0,5:0:0:5:150:-13.7951,-1.50515,0	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:72:39,33:39:1400:33:1154:-82.4881,0,-104.625	0/0:112:112,0:112:3971:0:0:0,-33.7154,-357.579	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:178:178,0:178:6359:0:0:0,-53.5833,-572.396	0/0:123:123,0:123:4393:0:0:0,-37.0267,-395.542	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/0:97:95,2:95:3397:2:72:0,-22.3632,-299.106	0/0:102:100,2:100:3524:2:72:0,-23.8683,-310.53	0/0:54:53,0:53:1870:0:0:0,-15.9546,-168.216	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:58:58,0:58:2058:0:0:0,-17.4597,-184.037	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	0/0:113:112,0:112:4009:0:0:0,-33.7154,-360.637	0/1:77:38,39:38:1349:39:1396:-102.76,0,-98.529	0/1:85:51,34:51:1802:34:1212:-83.7988,0,-136.87	0/0:150:150,0:150:5358:0:0:0,-45.1545,-482.35	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:71:71,0:71:2514:0:0:0,-21.3731,-226.509	0/1:10:4,6:4:144:6:201:-15.4067,0,-10.3033	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/0:122:122,0:122:4358:0:0:0,-36.7257,-392.392	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:81:81,0:81:2916:0:0:0,-24.3834,-262.674	0/1:49:27,22:27:964:22:788:-56.4943,0,-72.3264	0/0:127:126,1:126:4519:1:36:0,-34.6325,-401.828	0/1:20:14,6:14:504:6:212:-13.4042,0,-39.6775	0/0:66:66,0:66:2346:0:0:0,-19.868,-211.396	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:62:62,0:62:2232:0:0:0,-18.6639,-199.693	0/1:137:80,57:80:2872:57:2014:-140.288,0,-217.475	0/1:57:14,43:14:485:43:1499:-118.038,0,-26.8183	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.035	0/0:110:110,0:110:3937:0:0:0,-33.1133,-354.52
chr06	9750541	.	A	G	57204	PASS	AB=0.494922;ABP=4.17904;AC=48;AF=0.255319;AN=188;AO=2628;CIGAR=1X;DP=13340;DPB=13340;DPRA=0.870052;EPP=5709.64;EPPR=23246.5;GTI=4;LEN=1;MEANALT=1.03226;MQM=55.4581;MQMR=59.9579;NS=94;NUMALT=1;ODDS=0.091268;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92186;QR=378053;RO=10708;RPL=1184;RPP=58.867;RPPR=820.671;RPR=1444;RUN=1;SAF=1184;SAP=58.867;SAR=1444;SRF=4351;SRP=819.043;SRR=6357;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:20,13:20:699:13:448:-30.6553,0,-53.2985	0/0:208:208,0:208:7330:0:0:0,-62.6142,-659.672	0/1:242:110,132:110:3884:132:4606:-338.653,0,-276.885	0/0:212:212,0:212:7470:0:0:0,-63.8184,-672.323	0/1:85:51,34:51:1805:34:1212:-83.633,0,-137.132	0/1:70:46,24:46:1636:24:838:-54.5442,0,-126.457	0/0:219:219,0:219:7746:0:0:0,-65.9256,-697.182	0/1:205:108,97:108:3825:97:3439:-247.241,0,-282.722	0/1:132:52,80:52:1837:80:2827:-214.271,0,-125.873	0/1:145:53,92:53:1869:92:3226:-244.801,0,-124.838	0/1:123:58,65:58:2039:65:2266:-166.046,0,-146.755	0/0:161:161,0:161:5731:0:0:0,-48.4658,-515.909	0/1:159:87,72:87:3060:72:2522:-178.946,0,-227.767	0/1:134:56,78:56:1992:78:2725:-204.73,0,-139.216	0/0:125:125,0:125:4366:0:0:0,-37.6287,-393.116	0/1:119:72,47:72:2540:47:1631:-111.078,0,-193.028	0/0:147:147,0:147:5122:0:0:0,-44.2514,-461.135	0/0:133:133,0:133:4687:0:0:0,-40.037,-421.996	0/0:102:102,0:102:3554:0:0:0,-30.7051,-320.07	0/0:350:349,1:349:12321:1:32:0,-102.161,-1105.54	0/1:217:135,82:135:4739:82:2874:-193.13,0,-361.35	0/0:92:92,0:92:3271:0:0:0,-27.6948,-294.61	0/1:74:34,40:34:1208:40:1407:-103.966,0,-86.7499	0/1:122:53,69:53:1881:69:2412:-180.322,0,-132.841	0/1:84:44,40:44:1549:40:1402:-100.949,0,-114.413	0/0:334:334,0:334:11810:0:0:0,-100.544,-1062.78	0/0:330:329,0:329:11693:0:0:0,-99.0389,-1051.11	0/0:78:78,0:78:2763:0:0:0,-23.4803,-248.913	0/1:353:191,162:191:6799:162:5693:-405.357,0,-505.706	0/1:113:53,60:53:1888:60:2106:-155.445,0,-136.182	0/0:175:174,1:174:6126:1:36:0,-49.0972,-547.864	0/1:6:1,5:1:36:5:165:-13.3566,0,-1.79209	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:2,4:2:72:4:144:-11.4907,0,-5.03054	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:405:214,191:214:7623:191:6719:-479.627,0,-564.195	0/0:164:164,0:164:5745:0:0:0,-49.3689,-517.17	0/0:131:131,0:131:4611:0:0:0,-39.4349,-415.005	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:183:183,0:183:6480:0:0:0,-55.0885,-583.292	0/0:96:95,1:95:3373:1:36:0,-25.3124,-300.2	0/1:146:72,74:72:2568:74:2601:-189.933,0,-187.408	0/1:221:120,101:120:4237:101:3526:-249.913,0,-314.929	0/1:112:57,55:57:2023:55:1895:-136.707,0,-148.627	0/1:71:38,33:38:1315:33:1162:-82.9222,0,-97.2702	0/1:165:85,80:85:3011:80:2813:-203.412,0,-221.553	0/0:118:118,0:118:4170:0:0:0,-35.5215,-375.484	0/0:138:138,0:138:4852:0:0:0,-41.5421,-436.826	0/1:178:94,83:94:3356:83:2956:-212.195,0,-248.615	0/1:219:114,105:114:4028:105:3681:-264.773,0,-296.786	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:171:171,0:171:6073:0:0:0,-51.4761,-546.677	0/0:49:48,1:48:1704:1:36:0,-11.1717,-150.067	0/1:5:3,2:3:108:2:72:-5.2853,0,-8.57002	0/1:184:97,87:97:3457:87:3019:-216.055,0,-255.952	0/0:47:44,3:44:1547:3:108:0,-4.11587,-129.488	1/1:6:0,6:0:0:6:204:-18.6755,-1.80618,0	0/1:16:7,9:7:244:9:320:-24.3009,0,-17.4829	0/1:134:69,65:69:2448:65:2310:-167.494,0,-180.238	0/0:197:195,2:195:6856:2:72:0,-52.4951,-610.15	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:164:164,0:164:5818:0:0:0,-49.3689,-523.736	0/0:241:235,6:235:8266:6:201:0,-54.1818,-725.593	0/0:150:149,1:149:5296:1:32:0,-41.9552,-473.575	0/0:90:89,1:89:3121:1:36:0,-23.4944,-277.521	0/0:231:230,0:230:8147:0:0:0,-69.2369,-732.889	0/0:170:163,7:163:5744:7:248:0,-28.5599,-494.465	0/0:64:64,0:64:2248:0:0:0,-19.2659,-202.58	0/0:134:134,0:134:4710:0:0:0,-40.338,-424.066	0/0:173:173,0:173:6104:0:0:0,-52.0782,-549.47	0/1:24:15,9:15:525:9:307:-20.6877,0,-40.3533	0/0:104:104,0:104:3634:0:0:0,-31.3071,-327.263	0/1:89:30,58:30:1068:58:2026:-155.448,0,-69.5817	0/1:263:138,125:138:4873:125:4382:-314.653,0,-359.555	0/0:223:223,0:223:7942:0:0:0,-67.1297,-714.808	0/0:172:172,0:172:6024:0:0:0,-51.7772,-542	0/0:182:180,2:180:6378:2:68:0,-48.3332,-567.66	0/1:11:6,5:6:212:5:171:-12.4141,0,-16.1135	0/0:177:176,1:176:6201:1:36:0,-49.684,-554.6	0/0:156:156,0:156:5524:0:0:0,-46.9607,-497.257	0/0:326:325,1:325:11413:1:36:0,-94.5375,-1023.47	0/0:179:179,0:179:6232:0:0:0,-53.8844,-560.988	0/0:135:135,0:135:4791:0:0:0,-40.639,-431.274	0/1:186:90,96:90:3168:96:3368:-246.33,0,-229.352	0/0:301:299,2:299:10527:2:66:0,-84.3449,-941.09	0/1:77:36,41:36:1249:41:1447:-107.055,0,-89.5303	0/0:170:170,0:170:5978:0:0:0,-51.1751,-538.136	0/0:143:142,1:142:4995:1:36:0,-39.449,-446.107	0/0:88:86,2:86:3023:2:68:0,-20.0329,-265.846	0/1:133:75,58:75:2656:58:2058:-144.771,0,-199.061	0/1:154:47,107:47:1667:107:3739:-289.585,0,-103.958	0/0:131:130,1:130:4618:1:36:0,-35.8519,-412.199	0/0:231:230,1:230:8116:1:32:0,-66.3386,-727.272
chr06	9791087	.	A	T	285110	PASS	AB=0.481481;ABP=20.7842;AC=144;AF=0.765957;AN=188;AO=13097;CIGAR=1X;DP=16221;DPB=16221;DPRA=0;EPP=28234.7;EPPR=6678.4;GTI=4;LEN=1;MEANALT=1.07447;MQM=59.9897;MQMR=59.9981;NS=94;NUMALT=1;ODDS=0.83191;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=468072;QR=111599;RO=3114;RPL=24;RPP=28234.7;RPPR=6678.4;RPR=13073;RUN=1;SAF=0;SAP=28442.8;SAR=13097;SRF=0;SRP=6764.98;SRR=3114;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:46,35:46:1643:35:1243:-87.7904,0,-123.774	1/1:197:0,197:0:0:197:7048:-634.377,-59.3029,0	0/1:227:115,112:115:4096:112:4004:-292.216,0,-300.491	1/1:512:1,511:1:36:511:18255:-1638.67,-150.529,0	0/1:166:98,68:98:3511:68:2436:-169.524,0,-266.228	0/1:64:27,37:27:964:37:1328:-100.556,0,-67.8109	1/1:236:2,234:2:72:234:8383:-747.637,-64.2064,0	0/1:274:155,119:155:5547:119:4246:-299.838,0,-416.872	0/1:105:44,61:44:1576:61:2184:-165.218,0,-110.523	0/1:122:65,57:65:2327:57:2028:-146.067,0,-172.964	0/1:92:42,50:42:1512:50:1784:-133.148,0,-108.68	1/1:89:0,89:0:0:89:3174:-285.883,-26.7917,0	0/1:76:41,35:41:1461:35:1244:-89.3864,0,-108.906	0/1:90:52,38:52:1853:38:1360:-95.6079,0,-139.955	1/1:80:0,80:0:0:80:2848:-256.556,-24.0824,0	0/1:61:30,31:30:1080:31:1095:-80.4964,0,-79.1504	1/1:76:0,76:0:0:76:2715:-244.593,-22.8783,0	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:357:0,356:0:0:356:12747:-1146.69,-107.167,0	0/1:261:121,140:121:4335:140:5024:-373.736,0,-311.756	1/1:229:0,229:0:0:229:8178:-736.036,-68.9359,0	0/1:145:82,63:82:2940:63:2250:-159.114,0,-221.185	0/1:226:120,106:120:4312:106:3800:-274.165,0,-320.222	0/1:117:53,64:53:1896:64:2287:-170.871,0,-135.698	1/1:630:1,629:1:36:629:22447:-2016.05,-186.051,0	1/1:406:0,406:0:0:406:14501:-1304.84,-122.218,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:639:315,324:315:11289:324:11628:-854.026,0,-823.531	0/1:257:131,126:131:4685:126:4489:-326.815,0,-344.445	1/1:601:0,601:0:0:601:21513:-1935.62,-180.919,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	1/1:13:1,12:1:36:12:428:-35.2605,-0.315115,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:281:154,127:154:5502:127:4555:-325.525,0,-410.714	1/1:390:1,389:1:36:389:13923:-1249.24,-113.803,0	1/1:93:0,93:0:0:93:3340:-300.816,-27.9958,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:287:1,286:1:36:286:10205:-914.781,-82.7973,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:262:121,141:121:4348:141:5033:-374.247,0,-312.623	0/1:85:41,44:41:1476:44:1584:-117.264,0,-107.549	0/1:83:41,42:41:1454:42:1490:-109.408,0,-106.169	0/1:159:75,84:75:2700:84:2998:-222.175,0,-195.38	0/1:246:130,116:130:4672:116:4136:-298.368,0,-346.586	1/1:344:2,342:2:72:342:12193:-1090.38,-96.7176,0	1/1:211:0,211:0:0:211:7497:-674.771,-63.5173,0	0/1:290:153,137:153:5500:137:4893:-353.222,0,-407.82	0/1:253:141,112:141:5046:112:4012:-285.108,0,-378.124	0/1:20:5,15:5:180:15:536:-42.5542,0,-10.5315	1/1:202:0,202:0:0:202:7213:-649.226,-60.8081,0	1/1:41:1,40:1:36:40:1431:-125.489,-8.74396,0	0/1:17:13,4:13:468:4:144:-8.19611,0,-37.3421	0/1:234:132,100:132:4727:100:3570:-251.31,0,-355.389	1/1:95:0,94:0:0:94:3372:-303.336,-28.2968,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:23:20,3:20:720:3:108:-3.15148,0,-58.2051	0/1:182:104,78:104:3728:78:2798:-197.272,0,-280.933	1/1:159:0,158:0:0:158:5655:-508.71,-47.5627,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:429:0,429:0:0:429:15317:-1378.24,-129.142,0	1/1:430:8,422:8:288:422:15058:-1328.68,-103.175,0	1/1:156:0,156:0:0:156:5572:-501.605,-46.9607,0	1/1:201:0,201:0:0:201:7148:-643.38,-60.507,0	1/1:264:1,263:1:36:263:9402:-842.545,-75.8736,0	1/1:211:2,209:2:72:209:7450:-663.712,-56.6806,0	1/1:37:0,37:0:0:37:1317:-118.813,-11.1381,0	1/1:154:0,154:0:0:154:5513:-496.296,-46.3586,0	1/1:103:0,103:0:0:103:3704:-333.56,-31.0061,0	0/1:25:12,13:12:428:13:460:-34.2096,0,-31.3331	1/1:197:0,197:0:0:197:7036:-633.304,-59.3029,0	0/1:120:53,67:53:1904:67:2399:-180.043,0,-135.514	0/1:270:141,129:141:5051:129:4618:-334.506,0,-373.456	1/1:385:0,385:0:0:385:13779:-1239.89,-115.897,0	1/1:196:0,196:0:0:196:7005:-630.512,-59.0019,0	1/1:200:0,200:0:0:200:7162:-644.635,-60.206,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:181:0,181:0:0:181:6476:-582.926,-54.4864,0	1/1:172:0,172:0:0:172:6171:-555.486,-51.7772,0	1/1:434:1,429:1:36:429:15354:-1377.97,-126.204,0	1/1:136:0,136:0:0:136:4817:-433.685,-40.9401,0	1/1:85:0,85:0:0:85:3041:-273.92,-25.5876,0	0/1:105:59,45:59:2120:45:1596:-112.262,0,-159.402	1/1:191:0,191:0:0:191:6831:-614.861,-57.4967,0	0/1:60:31,29:31:1116:29:1044:-76.213,0,-82.6899	1/1:104:0,104:0:0:104:3708:-333.921,-31.3071,0	1/1:100:0,100:0:0:100:3571:-321.598,-30.103,0	1/1:61:1,60:1:36:60:2139:-189.179,-14.7646,0	0/1:139:63,76:63:2268:76:2709:-202.209,0,-162.539	0/1:62:37,25:37:1332:25:892:-61.9358,0,-101.519	1/1:241:0,241:0:0:241:8582:-772.38,-72.5482,0	1/1:125:0,125:0:0:125:4484:-403.728,-37.6288,0
chr06	9855455	.	G	C	30953.6	PASS	AB=0.521528;ABP=17.1283;AC=44;AF=0.234043;AN=188;AO=1838;CIGAR=1X;DP=9580;DPB=9580;DPRA=0.786087;EPP=3994.18;EPPR=16740.7;GTI=0;LEN=1;MEANALT=1.14;MQM=59.9956;MQMR=59.9891;NS=94;NUMALT=1;ODDS=4.85616;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65644;QR=276523;RO=7728;RPL=0;RPP=3994.18;RPPR=16740.7;RPR=1838;RUN=1;SAF=1838;SAP=3994.18;SAR=0;SRF=7728;SRP=16784.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:17,21:17:612:21:748:-56.2062,0,-43.9743	0/0:141:141,0:141:5041:0:0:0,-42.4452,-453.835	0/1:88:37,51:37:1332:51:1820:-137.591,0,-93.6917	0/0:259:259,0:259:9219:0:0:0,-77.9668,-829.682	0/1:110:50,60:50:1773:60:2151:-160.743,0,-126.738	0/1:63:43,20:43:1536:20:703:-44.6286,0,-119.568	0/0:162:162,0:162:5812:0:0:0,-48.7669,-523.192	0/1:167:63,104:63:2256:104:3724:-285.08,0,-153.031	0/1:82:36,46:36:1292:46:1632:-122.484,0,-91.8993	0/1:101:43,57:43:1548:57:2040:-153.409,0,-109.064	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/0:63:62,1:62:2228:1:36:0,-15.3666,-197.186	0/1:51:29,22:29:1044:22:788:-55.8923,0,-78.9223	0/1:63:27,36:27:964:36:1292:-97.6189,0,-68.1119	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:43:13,30:13:464:30:1072:-83.8482,0,-29.1532	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:290:290,0:290:10344:0:0:0,-87.2987,-930.881	0/1:151:71,80:71:2518:80:2868:-212.901,0,-181.414	0/0:197:197,0:197:7031:0:0:0,-59.3029,-632.849	0/1:52:27,25:27:968:25:896:-65.3068,0,-71.7838	0/1:105:50,55:50:1792:55:1940:-143.266,0,-129.954	0/1:86:36,50:36:1292:50:1778:-134.413,0,-90.6952	0/0:368:365,1:365:13088:1:36:0,-106.922,-1174.16	0/0:202:201,0:201:7157:0:0:0,-60.507,-643.825	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:275:168,107:168:6017:107:3817:-260.943,0,-458.849	0/1:226:112,114:112:3997:114:4064:-297.916,0,-291.886	0/0:176:174,1:174:6191:1:36:0,-49.4418,-553.688	0/1:20:13,7:13:460:7:244:-16.2788,0,-35.7148	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/1:9:2,7:2:68:7:248:-19.9549,0,-3.74844	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:133:62,71:62:2209:71:2548:-189.533,0,-159.036	0/0:280:280,0:280:10021:0:0:0,-84.2884,-901.825	0/0:60:59,0:59:2112:0:0:0,-17.7608,-189.989	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:158:158,0:158:5645:0:0:0,-47.5627,-508.17	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:160:90,70:90:3236:70:2495:-176.638,0,-243.166	0/1:45:22,23:22:788:23:824:-60.937,0,-57.6984	0/1:32:13,19:13:464:19:680:-51.8962,0,-32.4645	0/1:63:36,27:36:1296:27:960:-67.7514,0,-97.979	0/1:121:61,59:61:2184:59:2120:-154.624,0,-160.382	0/0:253:250,3:250:8960:3:108:0,-66.0854,-796.304	0/0:134:134,0:134:4795:0:0:0,-40.338,-431.706	0/1:125:63,61:63:2264:61:2192:-159.858,0,-166.335	0/1:201:77,124:77:2768:124:4420:-337.467,0,-188.854	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/0:160:159,0:159:5708:0:0:0,-47.8638,-513.476	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.174	0/1:56:19,37:19:684:37:1324:-102.604,0,-45.0326	0/1:110:56,54:56:2008:54:1928:-140.683,0,-147.88	0/0:47:47,0:47:1668:0:0:0,-14.1484,-150.407	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/1:33:15,18:15:536:18:648:-48.7179,0,-38.6408	0/1:81:34,47:34:1220:47:1680:-127.104,0,-85.7234	0/0:86:84,2:84:3008:2:72:0,-19.0519,-264.115	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/0:268:268,0:268:9606:0:0:0,-80.676,-864.488	0/0:196:196,0:196:7025:0:0:0,-59.0019,-631.609	0/0:82:80,0:80:2834:0:0:0,-24.0824,-255.01	0/0:95:95,0:95:3385:0:0:0,-28.5978,-304.865	0/0:146:146,0:146:5232:0:0:0,-43.9504,-471.017	0/0:125:125,0:125:4496:0:0:0,-37.6287,-404.806	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:47:25,22:25:900:22:779:-56.2837,0,-67.1726	0/0:149:149,0:149:5296:0:0:0,-44.8535,-476.772	0/1:48:24,24:24:860:24:864:-63.6331,0,-63.2724	0/1:201:82,118:82:2921:118:4229:-320.222,0,-202.558	0/0:187:187,0:187:6716:0:0:0,-56.2926,-604.512	0/0:181:181,0:181:6469:0:0:0,-54.4864,-582.295	0/0:144:144,0:144:5172:0:0:0,-43.3483,-465.618	0/1:25:17,8:17:608:8:288:-18.7417,0,-47.5263	0/0:152:152,0:152:5459:0:0:0,-45.7566,-491.435	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/0:228:228,0:228:8159:0:0:0,-68.6348,-734.324	0/0:72:72,0:72:2556:0:0:0,-21.6742,-230.27	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/1:42:17,25:17:608:25:892:-67.9564,0,-42.4088	0/0:67:66,1:66:2376:1:27:0,-17.4692,-211.398	0/1:32:14,18:14:504:18:648:-49.0189,0,-36.0651	0/0:50:49,0:49:1752:0:0:0,-14.7505,-157.604	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:81:41,40:41:1459:40:1409:-102.722,0,-107.222	0/1:45:22,23:22:784:23:820:-60.5762,0,-57.3376	0/0:116:115,0:115:4124:0:0:0,-34.6184,-370.984	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951
chr06	9970661	.	A	G	15510.9	PASS	AB=0.497186;ABP=3.1203;AC=43;AF=0.231183;AN=186;AO=812;CIGAR=1X;DP=4348;DPB=4348;DPRA=0.908953;EPP=409.76;EPPR=7124.96;GTI=2;LEN=1;MEANALT=1.02174;MQM=39.6823;MQMR=59.6979;NS=93;NUMALT=1;ODDS=1.71179;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28903;QR=126549;RO=3535;RPL=600;RPP=405.599;RPPR=7124.96;RPR=212;RUN=1;SAF=1;SAP=1757.57;SAR=811;SRF=0;SRP=7679.17;SRR=3535;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:248:-22.55,-2.10721,0	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:75:30,45:30:1072:45:1616:-121.844,0,-74.2152	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.97	0/1:9:3,6:3:108:6:208:-15.3123,0,-7.3659	0/1:21:13,8:13:468:8:280:-19.0965,0,-36.1298	0/0:55:55,0:55:1951:0:0:0,-16.5566,-175.863	0/1:54:27,27:27:963:27:968:-70.7257,0,-70.5643	0/1:41:21,20:21:752:20:707:-51.2635,0,-55.6477	0/1:43:24,19:24:860:19:672:-43.4439,0,-64.7775	0/1:66:27,39:27:972:39:1382:-94.8487,0,-67.9276	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/1:51:28,23:28:1008:23:820:-57.8998,0,-75.6838	0/1:61:29,32:29:1029:32:1144:-77.971,0,-74.5583	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.658	0/1:40:16,24:16:567:24:856:-59.342,0,-39.3149	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.597	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7897	0/0:47:47,0:47:1674:0:0:0,-14.1484,-150.946	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.434	0/1:67:33,34:33:1176:34:1207:-82.0362,0,-85.9742	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.843	0/1:30:10,20:10:360:20:716:-51.5086,0,-23.7134	0/1:24:11,13:11:392:13:456:-32.0598,0,-28.392	0/1:16:5,11:5:180:11:396:-26.4585,0,-11.7356	0/0:159:158,1:158:5644:1:36:0,-44.5176,-504.729	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.269	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.742	0/1:63:31,32:31:1116:32:1133:-74.0365,0,-81.7859	0/1:63:36,27:36:1296:27:942:-60.4176,0,-97.9744	0/0:62:61,1:61:2192:1:36:0,-15.3177,-194.195	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:3:1,2:1:36:2:63:-5.05915,0,-2.69518	0/1:5:1,4:1:36:4:144:-11.7363,0,-2.09312	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:160:83,77:83:2971:77:2745:-176.387,0,-219.452	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.744	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.916	0/1:4:1,3:1:36:3:108:-8.16509,0,-2.39415	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.881	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.336	0/1:25:10,15:10:360:15:540:-38.1928,0,-25.2186	0/1:55:20,34:20:716:34:1206:-83.4668,0,-48.1764	0/1:41:21,20:21:756:20:708:-47.5024,0,-56.0226	0/1:26:13,13:13:464:13:460:-28.6602,0,-34.2698	0/1:58:40,18:40:1425:18:644:-40.4109,0,-110.783	0/0:74:74,0:74:2626:0:0:0,-22.2762,-236.577	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/1:50:30,20:30:1076:20:720:-44.9286,0,-82.1004	0/1:25:12,13:12:432:13:468:-31.4027,0,-31.6954	1/1:3:0,3:0:0:3:108:-9.36921,-0.90309,0	0/0:70:70,0:70:2505:0:0:0,-21.0721,-225.684	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5735	0/1:14:6,8:6:212:8:284:-21.5571,0,-15.2104	0/1:58:35,23:35:1260:23:804:-50.1327,0,-96.2457	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.3114	0/1:4:2,2:2:72:2:72:-4.9582,0,-5.6326	0/1:19:6,13:6:216:13:459:-32.2041,0,-14.0709	0/1:22:13,9:13:468:9:324:-20.8157,0,-35.8231	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.047	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.986	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.804	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5033	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.29	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1505	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.555	0/1:10:6,4:6:216:4:144:-9.37044,0,-16.7802	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.719	0/1:34:18,16:18:648:16:576:-41.5882,0,-48.3625	0/1:64:45,19:45:1616:19:680:-38.2581,0,-126.464	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.756	0/0:51:50,1:50:1783:1:32:0,-12.1547,-157.501	0/0:45:42,3:42:1508:3:108:0,-3.5258,-125.98	.:.:.:.:.:.:.:.	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.913	0/0:32:32,0:32:1152:0:0:0,-9.63296,-102.794	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.89	0/0:84:84,0:84:3012:0:0:0,-25.2865,-270.778	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.668	0/1:49:23,26:23:819:26:915:-62.331,0,-59.2796	0/0:121:120,1:120:4265:1:36:0,-33.0785,-380.676	0/1:38:21,17:21:756:17:612:-43.605,0,-56.9281	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.288	0/0:44:44,0:44:1558:0:0:0,-13.2453,-140.304	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.892	0/1:74:43,31:43:1536:31:1116:-70.8318,0,-116.257	0/1:37:9,28:9:324:28:1004:-73.4898,0,-18.3677	0/0:23:23,0:23:804:0:0:0,-6.92369,-72.6689	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.954
chr06	9970690	.	G	A	75166.9	PASS	AB=0.497179;ABP=3.12058;AC=142;AF=0.763441;AN=186;AO=3481;CIGAR=1X;DP=4302;DPB=4302;DPRA=14.3067;EPP=7561.91;EPPR=1774.94;GTI=2;LEN=1;MEANALT=1.01111;MQM=59.7196;MQMR=39.628;NS=93;NUMALT=1;ODDS=1.39418;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124723;QR=29355;RO=820;RPL=3481;RPP=7561.91;RPPR=1783.62;RPR=0;RUN=1;SAF=0;SAP=7561.91;SAR=3481;SRF=1;SRP=1774.94;SRR=819;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2414	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	0/1:75:46,29:46:1644:29:1040:-71.3371,0,-124.367	1/1:68:0,68:0:0:68:2440:-219.853,-20.47,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-12.984	0/1:21:8,13:8:288:13:468:-36.1298,0,-19.8034	1/1:53:0,53:0:0:53:1896:-170.913,-15.9546,0	0/1:53:27,26:27:964:26:928:-67.8096,0,-70.6767	0/1:38:19,19:19:680:19:669:-49.0784,0,-49.7111	0/1:42:19,23:19:684:23:828:-62.2009,0,-44.1145	0/1:66:40,26:40:1436:26:932:-64.3285,0,-99.3289	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:51:23,28:23:828:28:1008:-75.6838,0,-58.3238	0/1:62:33,29:33:1184:29:1040:-75.2505,0,-81.1415	1/1:60:0,60:0:0:60:2152:-193.943,-18.0618,0	0/1:40:24,16:24:848:16:572:-39.7676,0,-58.9723	1/1:43:0,43:0:0:43:1528:-137.797,-12.9443,0	1/1:28:0,28:0:0:28:1008:-91.0282,-8.42884,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:52:0,52:0:0:52:1864:-168.032,-15.6536,0	0/1:67:35,32:35:1248:32:1140:-82.7402,0,-84.9792	1/1:45:0,45:0:0:45:1616:-145.722,-13.5464,0	0/1:31:21,10:21:741:10:360:-23.4124,0,-53.3221	0/1:25:14,11:14:504:11:396:-28.4488,0,-35.8144	0/1:16:11,5:11:377:5:180:-11.7356,0,-25.0747	1/1:157:2,154:2:72:154:5516:-489.96,-40.7191,0	1/1:80:0,80:0:0:80:2876:-259.031,-24.0824,0	1/1:33:0,33:0:0:33:1184:-106.864,-9.93399,0	0/1:64:33,31:33:1188:31:1112:-81.1245,0,-78.1154	0/1:64:28,36:28:1004:36:1296:-97.6734,0,-64.4975	1/1:60:1,59:1:36:59:2120:-187.718,-14.7157,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.89657	0/1:5:4,1:4:129:1:36:-2.09312,0,-10.3678	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:157:77,80:77:2764:80:2872:-211.437,0,-178.476	1/1:75:0,75:0:0:75:2692:-242.316,-22.5773,0	1/1:73:0,73:0:0:73:2594:-233.665,-21.9752,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.12149	1/1:44:0,44:0:0:44:1580:-142.474,-13.2453,0	1/1:35:0,35:0:0:35:1252:-112.976,-10.5361,0	0/1:25:15,10:15:540:10:360:-25.2186,0,-38.1928	0/1:55:35,20:35:1252:20:720:-48.5721,0,-86.8514	0/1:41:20,21:20:716:21:748:-55.3007,0,-47.9828	0/1:27:13,14:13:468:14:500:-37.2075,0,-28.5775	0/1:56:18,38:18:648:38:1352:-105.09,0,-41.3637	1/1:71:0,71:0:0:71:2548:-229.562,-21.3731,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:50:20,30:20:720:30:1072:-81.741,0,-44.9286	0/1:25:13,12:13:468:12:428:-31.3331,0,-31.4027	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.36921	1/1:67:0,67:0:0:67:2395:-215.781,-20.169,0	1/1:15:0,15:0:0:15:540:-48.9347,-4.51545,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-21.9106	0/1:58:23,35:23:824:35:1252:-95.5253,0,-51.224	1/1:19:0,19:0:0:19:684:-61.4338,-5.71957,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-4.9582	0/1:20:13,7:13:468:7:252:-17.0084,0,-32.7032	0/1:23:10,13:10:356:13:468:-35.5221,0,-22.6846	1/1:106:0,106:0:0:106:3808:-342.894,-31.9092,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:64:0,64:0:0:64:2292:-206.505,-19.2659,0	1/1:70:0,70:0:0:70:2504:-225.608,-21.0721,0	1/1:26:0,26:0:0:26:932:-84.1427,-7.82678,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:57:0,57:0:0:57:2040:-183.855,-17.1587,0	1/1:32:0,32:0:0:32:1148:-103.629,-9.63296,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:85:0,85:0:0:85:3052:-274.905,-25.5876,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-9.37044	1/1:44:0,44:0:0:44:1557:-140.403,-13.2453,0	0/1:34:16,18:16:576:18:648:-48.3625,0,-41.5882	0/1:65:19,46:19:676:46:1635:-127.87,0,-37.7168	1/1:72:0,72:0:0:72:2576:-232.035,-21.6742,0	1/1:50:1,49:1:36:49:1752:-154.321,-11.4569,0	1/1:43:3,40:3:108:40:1436:-119.503,-2.92374,0	.:.:.:.:.:.:.:.	1/1:42:0,42:0:0:42:1500:-135.281,-12.6433,0	1/1:31:0,31:0:0:31:1108:-99.9411,-9.33193,0	1/1:57:0,57:0:0:57:2052:-184.943,-17.1587,0	1/1:81:0,81:0:0:81:2904:-261.263,-24.3834,0	1/1:51:0,51:0:0:51:1813:-163.438,-15.3525,0	0/1:52:28,24:28:1008:24:860:-62.0667,0,-68.6738	1/1:120:1,119:1:36:119:4272:-381.304,-32.7775,0	0/1:37:16,21:16:576:21:756:-57.2291,0,-40.6851	1/1:56:0,56:0:0:56:2004:-180.617,-16.8577,0	1/1:41:0,41:0:0:41:1468:-132.4,-12.3422,0	1/1:41:0,41:0:0:41:1472:-132.77,-12.3422,0	0/1:73:31,42:31:1108:42:1508:-114.039,0,-70.7605	0/1:38:29,9:29:1040:9:320:-17.7032,0,-76.2003	1/1:22:0,22:0:0:22:788:-71.2333,-6.62266,0	1/1:89:0,89:0:0:89:3192:-287.477,-26.7917,0
chr06	10262108	.	A	C	15820.5	PASS	AB=0.540155;ABP=26.5529;AC=45;AF=0.241935;AN=186;AO=920;CIGAR=1X;DP=4282;DPB=4282;DPRA=0.896283;EPP=1906.36;EPPR=7188.85;GTI=3;LEN=1;MEANALT=1.02041;MQM=59.9728;MQMR=59.9881;NS=93;NUMALT=1;ODDS=0.327898;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32845;QR=120559;RO=3361;RPL=11;RPP=1906.36;RPPR=7171.62;RPR=909;RUN=1;SAF=0;SAP=2000.76;SAR=920;SRF=2;SRP=7283.97;SRR=3359;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:14,3:14:504:3:108:-4.95766,0,-40.5806	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/1:29:16,13:16:567:13:460:-33.0055,0,-42.6309	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:101:45,56:45:1612:56:1989:-148.878,0,-114.966	0/1:31:17,14:17:593:14:495:-35.5511,0,-44.3628	0/1:68:29,39:29:1036:39:1400:-105.829,0,-73.0839	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	0/1:39:17,22:17:612:22:792:-59.8655,0,-43.6733	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:29:12,17:12:432:17:608:-46.3222,0,-30.4913	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:22:22,0:22:792:0:0:0,-6.62266,-70.9765	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:39:16,23:16:572:23:813:-61.7489,0,-40.0733	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/1:19:2,17:2:72:17:612:-49.6939,0,-1.11715	0/1:78:46,32:46:1648:32:1144:-79.7892,0,-125.128	0/1:24:6,18:6:216:18:633:-50.0703,0,-12.5658	0/0:234:234,0:234:8383:0:0:0,-70.441,-754.474	0/0:71:71,0:71:2541:0:0:0,-21.3731,-228.939	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:93:31,62:31:1104:62:2232:-173.148,0,-71.6748	0/1:69:21,48:21:752:48:1720:-134.314,0,-47.2352	0/0:67:65,2:65:2336:2:72:0,-13.3323,-203.663	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	.:.:.:.:.:.:.:.	0/1:117:59,58:59:2124:58:2062:-150.629,0,-156.208	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.679	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:53:25,28:25:900:28:976:-72.1967,0,-65.3664	0/1:19:12,7:12:432:7:248:-16.9446,0,-33.5016	0/1:44:29,15:29:1032:15:525:-34.3327,0,-79.9482	0/1:46:20,26:20:720:26:932:-70.3515,0,-51.2814	0/1:46:22,23:22:792:23:824:-60.5772,0,-57.6995	0/0:87:85,2:85:3052:2:72:0,-19.3529,-268.072	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/1:88:36,52:36:1292:52:1868:-141.909,0,-90.0931	0/1:101:44,57:44:1576:57:2032:-152.748,0,-111.728	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:57:28,29:28:1004:29:1021:-75.0415,0,-73.5172	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:125:125,0:125:4492:0:0:0,-37.6287,-404.447	0/0:127:125,2:125:4492:2:72:0,-31.3941,-397.61	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:54:53,1:53:1904:1:36:0,-12.6573,-168.039	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/0:39:39,0:39:1381:0:0:0,-11.7402,-124.587	0/1:30:13,17:13:464:17:608:-46.0211,0,-33.0666	0/1:99:42,57:42:1504:57:2019:-152.166,0,-105.853	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:60:59,1:59:2120:1:36:0,-14.4635,-187.47	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:25:14,11:14:500:11:396:-28.457,0,-37.8104	0/0:60:59,1:59:2120:1:36:0,-14.4635,-187.468	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:64:32,32:32:1144:32:1152:-84.7242,0,-84.0036	0/1:32:11,21:11:396:21:756:-58.7343,0,-26.3498	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015
chr06	10480353	.	G	C	141424	PASS	AB=0.514737;ABP=9.21856;AC=142;AF=0.755319;AN=188;AO=6643;CIGAR=1X;DP=8268;DPB=8268;DPRA=25.6553;EPP=14419.4;EPPR=3518.62;GTI=3;LEN=1;MEANALT=1.06522;MQM=59.9949;MQMR=60;NS=94;NUMALT=1;ODDS=0.139746;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235894;QR=57740;RO=1619;RPL=6642;RPP=14419.4;RPPR=3518.62;RPR=1;RUN=1;SAF=6643;SAP=14428.1;SAR=0;SRF=1619;SRP=3518.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:18,10:18:648:10:347:-23.1348,0,-50.223	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	0/1:94:49,45:49:1752:45:1605:-116.441,0,-129.667	1/1:142:1,141:1:36:141:5051:-451.137,-39.148,0	0/1:46:16,30:16:561:30:1065:-82.3124,0,-36.9697	0/1:43:19,24:19:684:24:864:-65.1383,0,-48.946	1/1:89:0,89:0:0:89:3138:-282.645,-26.7917,0	0/1:104:52,52:52:1855:52:1860:-136.372,0,-135.922	0/1:56:33,23:33:1184:23:820:-57.2648,0,-90.0106	0/1:64:29,35:29:1040:35:1248:-93.3589,0,-74.6484	0/1:121:60,61:60:2124:61:2130:-155.54,0,-155.002	1/1:80:0,80:0:0:80:2793:-251.608,-24.0824,0	0/1:98:45,53:45:1604:53:1896:-141.417,0,-115.149	0/1:171:77,94:77:2726:94:3336:-248.981,0,-194.107	1/1:65:0,65:0:0:65:2320:-209.061,-19.567,0	0/1:69:26,42:26:928:42:1473:-112.033,0,-63.0085	1/1:115:0,115:0:0:115:4058:-365.409,-34.6185,0	1/1:85:0,85:0:0:85:3034:-273.289,-25.5876,0	1/1:74:1,73:1:36:73:2620:-232.449,-18.6779,0	1/1:120:0,120:0:0:120:4284:-385.739,-36.1236,0	0/1:162:72,90:72:2560:90:3160:-235.858,0,-181.881	1/1:71:0,71:0:0:71:2506:-225.79,-21.3731,0	0/1:45:25,20:25:896:20:705:-50.2264,0,-67.414	0/1:75:41,34:41:1468:34:1220:-87.5296,0,-109.839	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	1/1:225:0,225:0:0:225:7996:-719.662,-67.7318,0	1/1:131:0,131:0:0:131:4663:-419.831,-39.4349,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:123:56,67:56:1988:67:2371:-176.619,0,-142.168	0/1:140:43,97:43:1548:97:3443:-267.935,0,-97.4689	1/1:112:0,112:0:0:112:3989:-359.2,-33.7154,0	0/1:11:4,7:4:144:7:237:-18.3477,0,-10.0023	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:229:113,116:113:4004:116:4130:-302.949,0,-291.612	1/1:141:0,141:0:0:141:5012:-451.227,-42.4452,0	1/1:121:0,121:0:0:121:4290:-386.279,-36.4246,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:143:0,143:0:0:143:5067:-456.175,-43.0473,0	1/1:62:0,62:0:0:62:2187:-197.093,-18.6639,0	0/1:88:49,39:49:1752:39:1370:-97.1047,0,-131.473	0/1:92:46,46:46:1644:46:1607:-117.221,0,-120.554	0/1:86:44,42:44:1576:42:1497:-109.134,0,-116.243	0/1:89:40,48:40:1436:48:1692:-125.713,0,-102.687	0/1:96:45,51:45:1604:51:1823:-135.452,0,-115.751	1/1:102:1,101:1:36:101:3566:-317.55,-27.1068,0	1/1:90:0,90:0:0:90:3181:-286.513,-27.0927,0	0/1:99:56,43:56:2004:43:1540:-109.091,0,-150.832	0/1:114:49,65:49:1752:65:2330:-175.642,0,-123.647	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:125:0,125:0:0:125:4444:-399.861,-37.6288,0	1/1:62:1,61:1:36:61:2179:-192.777,-15.0656,0	0/1:11:4,7:4:144:7:239:-18.5314,0,-10.0023	0/1:72:34,38:34:1220:38:1340:-99.2231,0,-88.4326	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:57:27,30:27:953:30:1080:-80.3545,0,-68.9246	1/1:229:1,228:1:36:228:8135:-728.571,-65.3376,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:130:0,130:0:0:130:4624:-416.324,-39.1339,0	1/1:152:0,152:0:0:152:5377:-484.062,-45.7566,0	1/1:82:3,79:3:108:79:2794:-241.623,-14.6093,0	1/1:54:0,54:0:0:54:1913:-172.445,-16.2556,0	1/1:122:1,121:1:36:121:4332:-386.457,-33.1274,0	1/1:117:2,114:2:72:114:4031:-356.141,-28.4426,0	1/1:60:0,60:0:0:60:2143:-193.137,-18.0618,0	1/1:44:0,44:0:0:44:1559:-140.6,-13.2453,0	1/1:144:0,143:0:0:143:5049:-454.197,-43.0473,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	1/1:105:1,104:1:36:104:3682:-327.984,-28.0099,0	0/1:49:25,24:25:900:24:864:-63.3321,0,-66.5705	0/1:184:95,88:95:3403:88:3090:-222.878,0,-251.035	1/1:93:0,93:0:0:93:3310:-298.119,-27.9958,0	1/1:68:0,68:0:0:68:2405:-216.703,-20.47,0	1/1:86:1,85:1:36:85:3043:-270.501,-22.2903,0	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:79:0,79:0:0:79:2807:-252.869,-23.7814,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:145:0,145:0:0:145:5178:-466.16,-43.6494,0	1/1:123:0,123:0:0:123:4366:-393.114,-37.0267,0	1/1:96:0,96:0:0:96:3400:-306.213,-28.8989,0	0/1:108:48,60:48:1724:60:2128:-159.275,0,-122.934	1/1:181:5,176:5:172:176:6252:-546.958,-38.6685,0	0/1:64:34,30:34:1216:30:1080:-78.2473,0,-90.4806	1/1:110:0,110:0:0:110:3888:-350.116,-33.1133,0	1/1:98:0,98:0:0:98:3431:-309.003,-29.5009,0	1/1:137:0,136:0:0:136:4846:-435.935,-40.9401,0	0/1:227:114,113:114:4039:113:3988:-290.777,0,-295.365	0/1:72:51,21:51:1795:21:756:-46.6931,0,-140.155	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:101:0,101:0:0:101:3582:-322.587,-30.404,0
chr06	10480418	.	A	G	124843	PASS	AB=0.487197;ABP=7.18051;AC=142;AF=0.763441;AN=186;AO=6237;CIGAR=1X;DP=7757;DPB=7757;DPRA=28.0942;EPP=13546.5;EPPR=3297.13;GTI=2;LEN=1;MEANALT=1.03261;MQM=40.21;MQMR=53.9426;NS=93;NUMALT=1;ODDS=1.05432;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221704;QR=53866;RO=1517;RPL=1;RPP=13537.8;RPPR=3297.13;RPR=6236;RUN=1;SAF=1;SAP=13537.8;SAR=6236;SRF=0;SRP=3297.13;SRR=1517;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:14,15:14:500:15:540:-36.59,0,-36.3921	1/1:126:0,126:0:0:126:4423:-372.605,-37.9298,0	0/1:138:73,65:73:2624:65:2310:-153.117,0,-193.794	1/1:167:0,167:0:0:167:5959:-520.56,-50.272,0	0/1:56:27,29:27:972:29:1024:-69.8972,0,-70.6863	0/1:37:19,18:19:675:18:644:-43.5828,0,-48.8463	1/1:97:0,97:0:0:97:3436:-299.37,-29.1999,0	0/1:94:59,35:59:2090:35:1216:-72.3848,0,-157.603	0/1:66:34,32:34:1208:32:1139:-77.112,0,-88.5572	0/1:74:44,30:44:1580:30:1075:-71.5588,0,-120.083	0/1:39:24,15:24:851:15:536:-35.0822,0,-65.0539	1/1:55:0,55:0:0:55:1943:-163.257,-16.5567,0	0/1:59:33,26:33:1176:26:928:-61.337,0,-86.7943	0/1:62:34,28:34:1211:28:1004:-67.6576,0,-90.3214	1/1:71:0,71:0:0:71:2539:-222.434,-21.3731,0	0/1:39:21,18:21:747:18:623:-42.3987,0,-55.5957	1/1:63:0,63:0:0:63:2229:-187.877,-18.9649,0	1/1:61:0,61:0:0:61:2156:-181.608,-18.3628,0	1/1:47:0,47:0:0:47:1688:-142.741,-14.1484,0	1/1:216:0,216:0:0:216:7743:-672.376,-65.0225,0	0/1:108:51,57:51:1805:57:2024:-141.713,0,-128.948	1/1:107:0,107:0:0:107:3762:-329.944,-32.2102,0	0/1:51:20,31:20:720:31:1090:-79.5776,0,-49.7234	0/1:78:49,29:49:1733:29:1044:-65.589,0,-132.412	0/1:58:35,23:35:1247:23:820:-53.8179,0,-94.7954	1/1:167:0,167:0:0:167:5918:-521.566,-50.272,0	1/1:174:0,174:0:0:174:6159:-527.874,-52.3792,0	1/1:45:0,45:0:0:45:1601:-135.561,-13.5464,0	0/1:233:111,122:111:3930:122:4301:-307.029,0,-282.772	0/1:98:35,63:35:1256:63:2247:-163.515,0,-83.3031	1/1:70:0,70:0:0:70:2488:-212.913,-21.0721,0	0/1:12:4,8:4:144:8:288:-21.6054,0,-9.5541	1/1:17:0,17:0:0:17:604:-52.5618,-5.11751,0	0/1:6:3,3:3:89:3:108:-6.98846,0,-6.48608	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.68253	1/1:5:0,5:0:0:5:180:-15.583,-1.50515,0	0/1:206:103,103:103:3630:103:3679:-261.695,0,-264.132	1/1:150:0,150:0:0:150:5311:-451.223,-45.1545,0	1/1:35:0,35:0:0:35:1260:-107.056,-10.5361,0	.:.:.:.:.:.:.:.	1/1:145:1,144:1:36:144:5121:-434.14,-40.0562,0	1/1:50:0,50:0:0:50:1768:-151.729,-15.0515,0	0/1:106:57,48:57:2010:48:1701:-115.428,0,-148.654	0/1:92:39,53:39:1352:53:1900:-138.377,0,-94.0304	0/1:56:19,36:19:659:36:1279:-94.4723,0,-42.4082	0/1:55:37,18:37:1310:18:612:-37.4728,0,-101.183	0/1:103:38,65:38:1360:65:2309:-162.341,0,-91.3324	1/1:152:0,152:0:0:152:5415:-468.062,-45.7566,0	1/1:91:0,91:0:0:91:3245:-279.435,-27.3937,0	0/1:122:57,64:57:2028:64:2288:-162.826,0,-145.533	0/1:144:70,74:70:2508:74:2635:-186.956,0,-182.281	0/1:7:4,3:4:144:3:108:-7.70035,0,-11.1968	1/1:144:0,144:0:0:144:5135:-432.266,-43.3483,0	1/1:24:0,24:0:0:24:864:-76.6432,-7.22472,0	0/1:13:4,9:4:136:9:324:-23.1945,0,-8.63869	0/1:153:77,76:77:2728:76:2719:-186.235,0,-198.954	1/1:46:0,46:0:0:46:1643:-142.501,-13.8474,0	0/1:17:4,13:4:140:13:455:-35.2335,0,-7.79573	0/1:11:8,3:8:288:3:104:-6.18892,0,-22.9487	0/1:41:22,19:22:762:19:676:-45.9136,0,-56.337	1/1:109:0,109:0:0:109:3891:-338.866,-32.8123,0	0/1:8:7,1:7:248:1:36:-1.09446,0,-20.2135	1/1:222:1,221:1:32:221:7868:-682.842,-63.6355,0	1/1:144:3,141:3:108:141:5021:-426.574,-33.2828,0	1/1:61:0,61:0:0:61:2163:-186.45,-18.3628,0	1/1:76:0,76:0:0:76:2719:-234.675,-22.8783,0	1/1:187:7,180:7:248:180:6371:-528.516,-33.6459,0	1/1:67:0,67:0:0:67:2376:-206.386,-20.169,0	1/1:27:0,27:0:0:27:960:-82.6867,-8.12781,0	1/1:56:0,56:0:0:56:1999:-168.954,-16.8577,0	1/1:75:0,75:0:0:75:2659:-232.065,-22.5773,0	0/1:8:6,2:6:216:2:68:-3.92002,0,-17.368	1/1:59:0,59:0:0:59:2116:-178.752,-17.7608,0	0/1:49:26,23:26:917:23:816:-53.8233,0,-66.5596	0/1:59:29,30:29:1025:30:1052:-69.8874,0,-74.4239	1/1:195:0,195:0:0:195:6964:-608.705,-58.7009,0	1/1:85:0,85:0:0:85:3025:-254.477,-25.5876,0	1/1:75:0,75:0:0:75:2694:-227.095,-22.5773,0	0/1:10:2,8:2:72:8:288:-21.7192,0,-3.80923	1/1:157:1,156:1:32:156:5549:-468.907,-44.0644,0	1/1:83:0,83:0:0:83:2960:-249.443,-24.9855,0	1/1:148:0,148:0:0:148:5287:-456.657,-44.5524,0	1/1:74:0,74:0:0:74:2651:-231.927,-22.2762,0	1/1:62:0,62:0:0:62:2188:-191.468,-18.6639,0	0/1:65:37,28:37:1316:28:984:-66.6139,0,-98.7085	1/1:136:0,136:0:0:136:4847:-422.088,-40.9401,0	0/1:37:16,21:16:572:21:752:-52.1385,0,-40.5491	1/1:82:0,82:0:0:82:2870:-239.27,-24.6845,0	1/1:68:0,68:0:0:68:2376:-201.548,-20.47,0	1/1:36:0,36:0:0:36:1247:-107.534,-10.8371,0	0/1:68:34,34:34:1220:34:1204:-83.3566,0,-89.2112	0/1:162:113,49:113:4035:49:1740:-102.292,0,-313.781	1/1:100:2,98:2:72:98:3516:-298.92,-23.2712,0	1/1:116:0,116:0:0:116:4107:-356.827,-34.9195,0
chr06	10519277	.	ACCC	GCCC	127963	PASS	AB=0.455657;ABP=57.5108;AC=146;AF=0.776596;AN=188;AO=5938;CIGAR=1X3M;DP=7731;DPB=7731;DPRA=0;EPP=12706.8;EPPR=3632.53;GTI=2;LEN=1;MEANALT=1.57447;MQM=59.986;MQMR=60;NS=94;NUMALT=1;ODDS=1.10189;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212000;QR=60620;RO=1727;RPL=22;RPP=12706.8;RPPR=3632.53;RPR=5916;RUN=1;SAF=5938;SAP=12897.2;SAR=0;SRF=1727;SRP=3753.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:8,17:8:287:17:595:-46.1601,0,-18.6507	1/1:146:1,144:1:35:144:5095:-455.224,-40.4606,0	0/1:183:130,49:130:4536:49:1764:-104.869,0,-354.246	1/1:175:0,174:0:0:174:6191:-557.018,-52.3792,0	0/1:91:38,53:38:1320:53:1900:-143.884,0,-91.7039	0/1:34:25,9:25:868:9:324:-19.2708,0,-68.2002	1/1:104:1,100:1:36:100:3573:-318.214,-27.1531,0	0/1:104:55,49:55:1959:49:1728:-124.495,0,-145.279	0/1:58:29,29:29:1030:29:1044:-76.8151,0,-75.5543	0/1:73:28,44:28:988:44:1560:-118.657,0,-67.2	0/1:45:19,26:19:675:26:932:-70.6525,0,-47.5317	1/1:64:0,64:0:0:64:2269:-204.471,-19.2659,0	0/1:62:19,43:19:670:43:1544:-120.589,0,-41.9621	0/1:49:20,29:20:709:29:1040:-79.1639,0,-49.3859	1/1:75:0,74:0:0:74:2664:-239.724,-22.2762,0	0/1:66:35,31:35:1201:31:1112:-80.5234,0,-88.5218	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:62:0,61:0:0:61:2184:-196.466,-18.3628,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:173:0,170:0:0:170:6052:-544.423,-51.1751,0	0/1:113:63,49:63:2216:49:1741:-122.753,0,-165.758	1/1:88:0,87:0:0:87:3103:-279.138,-26.1896,0	0/1:107:79,28:79:2782:28:1004:-58.4657,0,-218.414	0/1:96:50,46:50:1750:46:1652:-120.07,0,-128.884	0/1:52:31,21:31:1083:21:744:-51.6308,0,-82.1237	1/1:258:0,257:0:0:257:9204:-827.97,-77.3647,0	1/1:163:1,161:1:36:161:5757:-514.711,-45.4635,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:231:107,120:107:3774:120:4308:-319.238,0,-271.204	0/1:124:76,46:76:2664:46:1648:-111.552,0,-202.951	1/1:85:0,83:0:0:83:2984:-268.432,-24.9855,0	0/1:7:3,4:3:107:4:144:-11.2064,0,-7.87496	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:180:97,81:97:3415:81:2908:-208.022,0,-253.634	1/1:208:0,205:0:0:205:7326:-659.07,-61.7112,0	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:112:0,112:0:0:112:4020:-361.988,-33.7154,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:155:89,66:89:3095:66:2347:-164.829,0,-232.12	0/1:74:39,35:39:1394:35:1256:-91.0691,0,-103.483	0/1:49:28,21:28:982:21:733:-51.5392,0,-73.942	0/1:70:42,27:42:1478:27:968:-66.4414,0,-112.319	0/1:122:61,59:61:2147:59:2120:-154.585,0,-157.015	1/1:148:0,147:0:0:147:5192:-467.06,-44.2514,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	0/1:110:58,52:58:2016:52:1855:-134.116,0,-148.596	0/1:152:83,65:83:2902:65:2324:-164.508,0,-216.509	0/1:4:3,1:3:97:1:32:-1.99519,0,-7.84654	1/1:119:0,117:0:0:117:4173:-375.392,-35.2205,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:15:5,10:5:166:10:360:-28.2289,0,-10.7517	0/1:112:64,45:64:2245:45:1596:-110.798,0,-169.184	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:6:1,5:1:35:5:180:-14.7459,0,-1.69245	0/1:5:2,2:2:72:2:72:-5.27277,0,-5.27277	0/1:96:53,43:53:1876:43:1540:-109.994,0,-140.221	1/1:92:2,90:2:72:90:3217:-282.914,-20.858,0	0/1:4:3,1:3:107:1:36:-2.39415,0,-8.77805	1/1:131:0,130:0:0:130:4657:-418.95,-39.1339,0	1/1:135:4,130:4:138:130:4652:-406.08,-27.935,0	1/1:58:0,58:0:0:58:2046:-184.408,-17.4597,0	1/1:50:0,49:0:0:49:1747:-157.212,-14.7505,0	1/1:112:1,111:1:36:111:3953:-352.363,-30.1171,0	1/1:66:3,62:3:106:62:2197:-188.103,-10.036,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:45:0,45:0:0:45:1586:-143.026,-13.5464,0	1/1:82:1,81:1:35:81:2894:-257.196,-21.1858,0	0/1:11:7,4:7:239:4:136:-9.26421,0,-18.5321	1/1:78:1,76:1:36:76:2712:-240.784,-19.8809,0	0/1:83:41,42:41:1444:42:1485:-108.956,0,-105.27	0/1:113:54,59:54:1893:59:2101:-155.341,0,-136.632	1/1:183:0,182:0:0:182:6509:-585.531,-54.7875,0	1/1:25:1,21:1:36:21:752:-64.4082,-3.38421,0	1/1:97:0,97:0:0:97:3469:-312.42,-29.1999,0	0/1:8:4,3:4:142:3:108:-7.69801,0,-10.7591	1/1:120:0,120:0:0:120:4286:-385.918,-36.1236,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:155:1,153:1:36:153:5465:-488.438,-43.0603,0	1/1:107:0,106:0:0:106:3768:-338.958,-31.9092,0	1/1:68:0,66:0:0:66:2368:-213.057,-19.868,0	0/1:79:48,31:48:1677:31:1093:-74.8963,0,-127.434	1/1:131:0,129:0:0:129:4613:-415.002,-38.8329,0	0/1:41:20,21:20:706:21:743:-54.8511,0,-51.5226	1/1:67:0,66:0:0:66:2372:-213.466,-19.868,0	1/1:61:0,60:0:0:60:2152:-193.735,-18.0618,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:104:48,56:48:1702:56:1992:-148.247,0,-122.16	0/1:68:44,23:44:1533:23:816:-53.3479,0,-117.851	1/1:96:0,95:0:0:95:3348:-301.174,-28.5979,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0
chr06	10519319	.	T	G	27563.7	PASS	AB=0.530705;ABP=28.3465;AC=43;AF=0.228723;AN=188;AO=1661;CIGAR=1X;DP=7601;DPB=7601;DPRA=0.995853;EPP=3609.83;EPPR=12890.7;GTI=3;LEN=1;MEANALT=1.05769;MQM=60;MQMR=59.9816;NS=94;NUMALT=1;ODDS=0.26417;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58639;QR=210379;RO=5935;RPL=1661;RPP=3609.83;RPPR=12882;RPR=0;RUN=1;SAF=1661;SAP=3609.83;SAR=0;SRF=5934;SRP=12882;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:18,7:18:626:7:240:-14.4089,0,-49.1376	0/0:145:144,1:144:5108:1:32:0,-40.45,-456.666	0/1:177:51,125:51:1807:125:4427:-345.263,0,-109.57	0/0:174:174,0:174:6194:0:0:0,-52.3792,-557.561	0/1:86:50,36:50:1788:36:1249:-86.8211,0,-135.314	0/1:30:9,21:9:316:21:737:-57.6206,0,-19.748	0/0:102:99,1:99:3489:1:36:0,-26.8579,-310.636	0/1:103:47,56:47:1665:56:1981:-147.556,0,-119.129	0/1:57:31,26:31:1094:26:914:-65.416,0,-81.6096	0/1:71:43,28:43:1519:28:1008:-69.6632,0,-115.629	0/1:42:24,18:24:860:18:632:-44.5635,0,-65.0786	0/0:66:66,0:66:2333:0:0:0,-19.868,-210.229	0/1:63:44,19:44:1559:19:676:-42.2031,0,-121.636	0/1:47:27,20:27:968:20:711:-50.1681,0,-73.289	0/0:75:75,0:75:2649:0:0:0,-22.5772,-238.656	0/1:64:31,33:31:1112:33:1153:-84.8083,0,-81.1254	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.354	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:164:164,0:164:5834:0:0:0,-49.3689,-525.176	0/1:113:50,63:50:1788:63:2252:-168.927,0,-126.409	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/1:101:27,74:27:953:74:2628:-206.364,0,-55.6793	0/1:96:48,48:48:1712:48:1676:-122.225,0,-125.467	0/1:51:22,29:22:756:29:1040:-78.5618,0,-53.0025	0/0:260:260,0:260:9256:0:0:0,-78.2678,-833.013	0/0:159:158,1:158:5571:1:32:0,-44.6645,-498.189	0/0:34:34,0:34:1182:0:0:0,-10.235,-106.683	0/1:226:119,106:119:4162:106:3750:-269.61,0,-306.677	0/1:117:46,71:46:1644:71:2524:-192.189,0,-113.028	0/0:83:83,0:83:2928:0:0:0,-24.9855,-263.755	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:9,1:9:311:1:36:-0.587975,0,-25.3134	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:177:82,95:82:2914:95:3294:-243.399,0,-209.21	0/0:209:209,0:209:7393:0:0:0,-62.9153,-665.154	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.735	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:111:111,0:111:3949:0:0:0,-33.4143,-355.602	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:149:66,83:66:2352:83:2898:-216.203,0,-167.086	0/1:73:35,38:35:1228:38:1355:-100.275,0,-88.8459	0/1:44:19,25:19:680:25:884:-66.6325,0,-48.2838	0/1:70:30,40:30:1049:40:1432:-108.105,0,-73.6461	0/1:120:58,62:58:2071:62:2206:-162.68,0,-150.536	0/0:149:149,0:149:5304:0:0:0,-44.8535,-477.498	0/0:71:71,0:71:2518:0:0:0,-21.3731,-226.872	0/1:105:47,58:47:1675:58:2054:-153.522,0,-119.428	0/1:145:65,80:65:2288:80:2825:-210.838,0,-162.531	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:117:116,1:116:4087:1:36:0,-31.6222,-364.421	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:107:45,62:45:1616:62:2211:-167.044,0,-113.52	0/0:41:41,0:41:1447:0:0:0,-12.3422,-130.525	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:5:3,2:3:104:2:64:-4.57354,0,-8.19766	0/1:93:44,49:44:1551:49:1735:-128.438,0,-111.885	0/0:92:90,2:90:3198:2:71:0,-20.9527,-281.302	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/0:131:131,0:131:4678:0:0:0,-39.4349,-421.181	0/0:137:134,3:134:4693:3:108:0,-31.1659,-412.457	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/0:51:50,0:50:1775:0:0:0,-15.0515,-159.712	0/0:111:110,1:110:3896:1:36:0,-29.8161,-347.237	0/0:66:62,4:62:2186:4:135:0,-7.38547,-184.523	0/0:22:22,0:22:758:0:0:0,-6.62266,-68.5367	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.113	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:80:80,0:80:2829:0:0:0,-24.0824,-254.849	0/1:84:43,41:43:1531:41:1441:-104.697,0,-112.796	0/1:107:57,50:57:2021:50:1761:-126.562,0,-149.946	0/0:182:182,0:182:6407:0:0:0,-54.7875,-576.722	0/0:25:24,1:24:856:1:36:0,-3.92747,-73.7628	0/0:97:97,0:97:3434:0:0:0,-29.1999,-309.272	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/0:121:121,0:121:4295:0:0:0,-36.4246,-386.729	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:147:145,2:145:5132:2:72:0,-37.4147,-455.189	0/0:107:107,0:107:3808:0:0:0,-32.2102,-342.917	0/0:68:68,0:68:2395:0:0:0,-20.47,-215.805	0/1:80:32,48:32:1148:48:1676:-127.041,0,-79.5474	0/0:131:131,0:131:4637:0:0:0,-39.4349,-417.494	0/1:40:21,19:21:756:19:675:-49.0358,0,-56.326	0/0:67:67,0:67:2363:0:0:0,-20.169,-212.926	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/0:55:55,0:55:1962:0:0:0,-16.5566,-176.854	0/1:103:57,46:57:2022:46:1593:-112.648,0,-151.246	0/1:64:23,41:23:824:41:1451:-111.619,0,-55.2174	0/0:87:87,0:87:3067:0:0:0,-26.1896,-276.259	0/0:86:86,0:86:3020:0:0:0,-25.8886,-272.032
chr06	10571985	.	G	T	74540.2	PASS	AB=0.495156;ABP=3.38896;AC=141;AF=0.758065;AN=186;AO=3717;CIGAR=1X;DP=4681;DPB=4681;DPRA=15.57;EPP=7979.11;EPPR=2094.14;GTI=2;LEN=1;MEANALT=1.01111;MQM=40.4283;MQMR=59.6999;NS=93;NUMALT=1;ODDS=0.67883;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132099;QR=34342;RO=963;RPL=3706;RPP=7979.11;RPPR=2094.14;RPR=11;RUN=1;SAF=3717;SAP=8074.37;SAR=0;SRF=963;SRP=2094.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:2,7:2:72:7:252:-19.8252,0,-4.12745	1/1:60:0,60:0:0:60:2137:-187.774,-18.0618,0	0/1:71:39,32:39:1387:32:1140:-78.4873,0,-103.753	1/1:106:0,106:0:0:106:3770:-323.163,-31.9092,0	0/1:42:16,26:16:568:26:905:-67.525,0,-38.8077	0/1:26:10,16:10:360:16:568:-42.4976,0,-24.9175	1/1:72:0,72:0:0:72:2545:-218.185,-21.6742,0	0/1:76:38,38:38:1364:38:1368:-96.1818,0,-100.18	0/1:47:26,21:26:932:21:756:-51.9313,0,-70.0495	0/1:45:20,25:20:708:25:888:-61.7476,0,-50.4992	0/1:20:6,14:6:212:14:500:-37.1847,0,-13.4042	1/1:41:1,40:1:32:40:1388:-117.643,-9.1937,0	0/1:39:20,19:20:708:19:680:-48.5005,0,-52.3045	0/1:28:16,12:16:567:12:424:-29.3067,0,-42.9315	1/1:32:0,32:0:0:32:1139:-96.6795,-9.63296,0	0/1:29:12,17:12:428:17:608:-44.7654,0,-30.1289	1/1:34:0,34:0:0:34:1199:-105.783,-10.235,0	1/1:31:0,30:0:0:30:1080:-95.0308,-9.0309,0	1/1:18:0,18:0:0:18:639:-56.0794,-5.41854,0	1/1:70:0,70:0:0:70:2478:-210.329,-21.0721,0	0/1:108:41,67:41:1468:67:2400:-176.934,0,-99.9039	1/1:65:0,65:0:0:65:2320:-199.017,-19.567,0	0/1:67:23,44:23:815:44:1555:-113.347,0,-53.5018	0/1:51:32,19:32:1140:19:669:-43.92,0,-87.5567	0/1:50:28,22:28:996:22:788:-54.6962,0,-74.9003	1/1:170:5,165:5:176:165:5895:-482.757,-34.9984,0	1/1:116:1,115:1:36:115:4112:-356.86,-31.3212,0	1/1:15:0,15:0:0:15:536:-46.809,-4.51545,0	0/1:127:77,50:77:2747:50:1773:-113.389,0,-209.191	0/1:82:42,40:42:1495:40:1424:-100.551,0,-110.158	1/1:68:0,68:0:0:68:2436:-207.153,-20.47,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:15:0,15:0:0:15:527:-46.2499,-4.51545,0	0/1:5:2,3:2:72:3:108:-8.35367,0,-5.33157	0/1:6:3,3:3:108:3:104:-7.72207,0,-8.26805	1/1:5:0,5:0:0:5:180:-16.1966,-1.50515,0	0/1:84:45,39:45:1595:39:1391:-94.3621,0,-118.535	1/1:110:0,110:0:0:110:3920:-341.106,-33.1133,0	1/1:32:0,32:0:0:32:1123:-98.5107,-9.63296,0	.:.:.:.:.:.:.:.	1/1:67:0,67:0:0:67:2340:-205.282,-20.169,0	1/1:23:0,23:0:0:23:816:-72.1179,-6.92369,0	0/1:73:39,34:39:1392:34:1212:-84.4352,0,-103.604	0/1:35:16,19:16:559:19:676:-47.8737,0,-40.0929	0/1:20:11,9:11:396:9:316:-20.7955,0,-29.9621	0/1:82:39,43:39:1396:43:1532:-105.573,0,-101.238	0/1:83:36,47:36:1288:47:1663:-121.941,0,-91.0786	1/1:91:2,89:2:72:89:3192:-265.99,-20.557,0	1/1:62:0,62:0:0:62:2197:-187.721,-18.6639,0	0/1:64:27,37:27:968:37:1328:-94.9686,0,-68.1705	0/1:99:57,42:57:2036:42:1495:-98.0445,0,-153.669	0/1:8:4,4:4:144:4:144:-10.2591,0,-10.9054	1/1:63:1,62:1:36:62:2202:-189.621,-15.3666,0	1/1:29:0,29:0:0:29:1012:-86.6914,-8.72987,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:63:37,26:37:1309:26:919:-60.1516,0,-99.1434	1/1:33:2,31:2:72:31:1116:-89.1966,-3.11029,0	0/1:8:6,2:6:212:2:72:-4.0966,0,-17	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:49:19,30:19:684:30:1059:-78.4838,0,-47.1375	1/1:45:0,45:0:0:45:1599:-137.517,-13.5464,0	1/1:1:0,1:0:0:1:36:-3.4236,-0.30103,0	1/1:96:0,96:0:0:96:3436:-293.241,-28.8989,0	1/1:82:0,82:0:0:82:2923:-248.276,-24.6845,0	1/1:39:0,39:0:0:39:1382:-120.182,-11.7402,0	1/1:49:1,48:1:36:48:1694:-141.551,-11.1522,0	1/1:101:1,100:1:36:100:3553:-298.904,-26.8058,0	1/1:73:0,73:0:0:73:2599:-221.262,-21.9752,0	1/1:9:0,9:0:0:9:311:-27.6043,-2.70927,0	1/1:44:0,44:0:0:44:1568:-136.658,-13.2453,0	1/1:60:0,60:0:0:60:2127:-181.749,-18.0618,0	0/1:6:3,3:3:108:3:108:-7.7799,0,-8.26899	1/1:46:0,46:0:0:46:1643:-144.814,-13.8474,0	0/1:17:9,8:9:324:8:279:-19.7901,0,-24.3874	0/1:91:54,37:54:1928:37:1305:-88.0324,0,-146.4	1/1:81:0,81:0:0:81:2883:-247.74,-24.3834,0	1/1:52:0,52:0:0:52:1843:-162.573,-15.6536,0	1/1:58:0,58:0:0:58:2075:-181.604,-17.4597,0	0/1:5:4,1:4:144:1:36:-2.01586,0,-11.8085	1/1:71:1,70:1:36:70:2477:-212.874,-17.7749,0	1/1:64:0,64:0:0:64:2284:-199.958,-19.2659,0	1/1:92:0,92:0:0:92:3257:-277.965,-27.6948,0	1/1:40:0,40:0:0:40:1405:-121.026,-12.0412,0	1/1:29:0,29:0:0:29:1040:-88.8529,-8.72987,0	0/1:49:27,22:27:964:22:770:-51.4506,0,-72.3157	1/1:65:0,65:0:0:65:2283:-195.803,-19.567,0	0/1:22:9,13:9:324:13:464:-33.8914,0,-22.8823	1/1:41:0,41:0:0:41:1452:-128.343,-12.3422,0	1/1:33:0,33:0:0:33:1180:-104.286,-9.93399,0	1/1:23:0,23:0:0:23:820:-72.5798,-6.92369,0	0/1:41:20,21:20:708:21:740:-52.1689,0,-51.7025	0/1:31:23,8:23:824:8:288:-15.3236,0,-65.1514	1/1:52:0,52:0:0:52:1852:-157.9,-15.6536,0	1/1:39:0,39:0:0:39:1371:-118.542,-11.7402,0
chr06	10571991	.	G	A	76058	PASS	AB=0.491516;ABP=4.1893;AC=141;AF=0.75;AN=188;AO=3789;CIGAR=1X;DP=4776;DPB=4776;DPRA=19.2525;EPP=8126.82;EPPR=2135.41;GTI=3;LEN=1;MEANALT=1.01111;MQM=40.427;MQMR=59.6927;NS=94;NUMALT=1;ODDS=0.411934;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134708;QR=35097;RO=986;RPL=3777;RPP=8126.82;RPPR=2135.41;RPR=12;RUN=1;SAF=3789;SAP=8230.72;SAR=0;SRF=986;SRP=2144.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:2,7:2:72:7:244:-19.1775,0,-4.12745	1/1:60:0,60:0:0:60:2131:-187.357,-18.0618,0	0/1:73:40,33:40:1421:33:1172:-80.5185,0,-106.208	1/1:108:0,108:0:0:108:3819:-327.925,-32.5112,0	0/1:40:16,24:16:576:24:856:-63.7242,0,-40.1329	0/1:27:10,17:10:351:17:604:-45.3293,0,-23.7989	1/1:73:0,73:0:0:73:2599:-223.248,-21.9752,0	0/1:78:41,37:41:1447:37:1304:-90.3885,0,-107.041	0/1:47:26,21:26:923:21:743:-50.8583,0,-69.2382	0/1:45:21,24:21:748:24:856:-58.7972,0,-54.0974	0/1:21:7,14:7:248:14:504:-37.1581,0,-16.3426	1/1:43:1,42:1:36:42:1508:-127.574,-9.46359,0	0/1:41:21,20:21:752:20:703:-49.9942,0,-55.6631	0/1:27:15,12:15:528:12:424:-29.6077,0,-39.7234	1/1:34:0,34:0:0:34:1199:-102.199,-10.235,0	0/1:28:12,16:12:432:16:572:-41.8973,0,-30.7924	1/1:33:0,33:0:0:33:1184:-104.305,-9.93399,0	1/1:33:0,33:0:0:33:1184:-104.57,-9.93399,0	1/1:19:0,19:0:0:19:667:-59.0174,-5.71957,0	1/1:73:0,73:0:0:73:2589:-219.008,-21.9752,0	0/1:112:43,69:43:1531:69:2456:-181.312,0,-104.367	1/1:64:0,64:0:0:64:2287:-196.207,-19.2659,0	0/1:66:24,42:24:851:42:1496:-108.394,0,-57.0415	0/1:50:32,18:32:1148:18:648:-42.3409,0,-88.5783	0/1:50:27,22:27:968:22:784:-54.3176,0,-72.3245	1/1:174:5,169:5:176:169:6015:-493.501,-36.2025,0	1/1:120:1,119:1:36:119:4218:-366.657,-32.5253,0	1/1:15:0,15:0:0:15:536:-46.809,-4.51545,0	0/1:129:78,51:78:2771:51:1828:-117.451,0,-210.746	0/1:82:41,41:41:1468:41:1460:-103.72,0,-107.73	1/1:69:0,69:0:0:69:2444:-208.424,-20.7711,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:15:0,15:0:0:15:532:-46.6829,-4.51545,0	0/1:6:3,3:3:99:3:108:-8.05264,0,-7.4304	0/1:7:3,4:3:108:4:140:-10.5505,0,-7.96702	1/1:6:0,6:0:0:6:199:-17.9463,-1.80618,0	0/1:89:48,41:48:1698:41:1472:-99.7843,0,-126.287	1/1:109:0,109:0:0:109:3900:-339.079,-32.8123,0	1/1:32:0,32:0:0:32:1144:-100.241,-9.63296,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:69:0,69:0:0:69:2460:-215.031,-20.7711,0	1/1:24:0,24:0:0:24:847:-74.8552,-7.22472,0	0/1:74:39,35:39:1356:35:1244:-86.9835,0,-100.059	0/1:35:16,19:16:572:19:684:-48.4215,0,-41.265	0/1:20:11,9:11:396:9:324:-21.3468,0,-29.9621	0/1:85:44,41:44:1584:41:1463:-98.7369,0,-117.247	0/1:82:35,47:35:1252:47:1680:-123.631,0,-88.1411	1/1:92:2,90:2:72:90:3183:-265.485,-20.858,0	1/1:63:0,63:0:0:63:2240:-191.753,-18.9649,0	0/1:68:30,38:30:1076:38:1351:-95.7893,0,-76.6819	0/1:96:55,41:55:1967:41:1464:-96.2558,0,-148.372	0/1:8:4,4:4:144:4:144:-10.2591,0,-10.9054	1/1:64:1,63:1:36:63:2216:-190.727,-15.6676,0	1/1:29:0,29:0:0:29:1031:-88.3248,-8.72987,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:67:41,26:41:1460:26:911:-58.7395,0,-111.525	1/1:34:2,32:2:68:32:1133:-91.2661,-3.78643,0	0/1:8:6,2:6:207:2:72:-4.0966,0,-16.5421	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:50:18,32:18:644:32:1139:-85.1608,0,-43.2391	1/1:46:0,46:0:0:46:1652:-141.982,-13.8474,0	1/1:1:0,1:0:0:1:36:-3.4236,-0.30103,0	1/1:97:0,97:0:0:97:3448:-294.548,-29.1999,0	1/1:82:1,81:1:32:81:2879:-240.564,-21.4851,0	1/1:41:0,41:0:0:41:1448:-126.084,-12.3422,0	1/1:54:1,53:1:36:53:1900:-158.751,-12.6573,0	1/1:104:1,103:1:36:103:3671:-309.178,-27.7088,0	1/1:77:1,76:1:36:76:2707:-226.797,-19.581,0	1/1:8:0,8:0:0:8:288:-25.1392,-2.40824,0	1/1:45:0,45:0:0:45:1612:-140.446,-13.5464,0	1/1:59:0,59:0:0:59:2096:-178.626,-17.7608,0	0/1:7:3,4:3:108:4:140:-10.2802,0,-7.96796	1/1:46:0,46:0:0:46:1638:-143.974,-13.8474,0	0/1:16:9,7:9:324:7:248:-17.3573,0,-24.6885	0/1:94:56,38:56:2008:38:1335:-89.8048,0,-152.693	1/1:84:0,84:0:0:84:2975:-256.096,-25.2865,0	1/1:54:0,54:0:0:54:1896:-167.304,-16.2556,0	1/1:57:0,57:0:0:57:2039:-178.402,-17.1587,0	0/1:6:5,1:5:176:1:32:-1.36064,0,-14.3785	1/1:73:1,72:1:36:72:2572:-221.358,-18.3769,0	1/1:64:0,64:0:0:64:2288:-200.14,-19.2659,0	1/1:92:0,92:0:0:92:3267:-279.414,-27.6948,0	1/1:43:0,43:0:0:43:1544:-132.651,-12.9443,0	1/1:29:0,29:0:0:29:1023:-87.4591,-8.72987,0	0/1:49:26,23:26:927:23:816:-55.4622,0,-68.9862	1/1:70:0,70:0:0:70:2482:-212.784,-21.0721,0	0/1:22:9,13:9:316:13:464:-33.8914,0,-22.1553	1/1:44:0,44:0:0:44:1550:-136.932,-13.2453,0	1/1:35:0,35:0:0:35:1240:-109.665,-10.5361,0	1/1:25:0,25:0:0:25:892:-78.9179,-7.52575,0	0/1:41:19,22:19:664:22:775:-55.2068,0,-47.7414	0/1:31:22,9:22:784:9:324:-18.4053,0,-61.552	1/1:54:0,54:0:0:54:1894:-162.103,-16.2556,0	1/1:40:0,40:0:0:40:1422:-122.36,-12.0412,0
chr06	10586418	.	A	G	108717	PASS	AB=0.55102;ABP=51.7576;AC=142;AF=0.755319;AN=188;AO=5002;CIGAR=1X;DP=5981;DPB=5981;DPRA=32.4837;EPP=10804;EPPR=2113.69;GTI=6;LEN=1;MEANALT=1.03261;MQM=59.9174;MQMR=59.9805;NS=94;NUMALT=1;ODDS=0.271001;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178594;QR=34456;RO=976;RPL=4995;RPP=10804;RPPR=2113.69;RPR=7;RUN=1;SAF=5002;SAP=10864.7;SAR=0;SRF=976;SRP=2122.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:13,19:13:464:19:684:-52.2574,0,-32.4645	1/1:59:0,59:0:0:59:2096:-188.908,-17.7608,0	0/1:95:47,48:47:1660:48:1728:-127.207,0,-121.09	1/1:197:0,197:0:0:197:7046:-634.2,-59.3029,0	0/1:24:9,15:9:316:15:536:-41.3501,0,-21.5541	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:117:46,71:46:1620:71:2526:-192.37,0,-110.868	0/1:54:19,35:19:684:35:1239:-95.558,0,-45.6347	0/1:47:21,26:21:736:26:932:-70.0505,0,-52.414	0/1:26:11,15:11:371:15:540:-41.1098,0,-25.8884	1/1:84:0,84:0:0:84:2999:-270.134,-25.2865,0	0/1:57:27,30:27:948:30:1037:-76.4755,0,-68.4759	0/1:52:28,24:28:984:24:852:-61.3468,0,-73.2199	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	0/1:45:21,24:21:736:24:864:-64.5362,0,-53.016	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:69:32,37:32:1128:37:1328:-99.0512,0,-81.0544	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:87:32,55:32:1128:55:1969:-151.292,0,-75.6387	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:23:15,8:15:528:8:288:-19.3437,0,-40.8991	1/1:187:0,187:0:0:187:6701:-603.165,-56.2926,0	1/1:105:0,105:0:0:105:3728:-335.697,-31.6082,0	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	0/1:147:83,64:83:2906:64:2271:-160.4,0,-217.525	0/1:125:48,77:48:1712:77:2737:-208.919,0,-116.737	1/1:104:0,104:0:0:104:3689:-332.206,-31.3071,0	0/1:8:7,1:7:244:1:36:-1.19004,0,-19.8912	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:134:60,74:60:2115:74:2642:-197.689,0,-150.276	1/1:74:0,74:0:0:74:2651:-238.835,-22.2762,0	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:101:0,101:0:0:101:3620:-325.96,-30.404,0	1/1:29:0,29:0:0:29:1040:-93.9037,-8.72987,0	0/1:67:25,42:25:892:42:1499:-115.035,0,-60.4307	0/1:51:26,25:26:928:25:900:-65.9685,0,-68.4857	0/1:45:25,20:25:880:20:712:-50.8603,0,-65.9714	0/1:68:37,31:37:1300:31:1096:-78.4799,0,-96.8312	0/1:54:16,38:16:560:38:1332:-103.875,0,-34.4731	1/1:156:1,155:1:36:155:5527:-493.945,-43.3624,0	1/1:80:0,80:0:0:80:2853:-257.007,-24.0824,0	0/1:85:38,47:38:1322:47:1688:-126.619,0,-93.6879	0/1:45:21,24:21:752:24:844:-62.7303,0,-54.4599	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:82:0,82:0:0:82:2927:-263.665,-24.6845,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:75:35,40:35:1233:40:1432:-106.6,0,-88.6948	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	0/1:16:3,13:3:108:13:464:-37.2795,0,-5.25869	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/1:99:40,59:40:1432:59:2112:-160.547,0,-99.3756	1/1:57:0,57:0:0:57:2031:-183.062,-17.1587,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:178:0,176:0:0:176:6306:-567.271,-52.9813,0	1/1:148:1,147:1:36:147:5259:-469.848,-40.9542,0	1/1:51:0,51:0:0:51:1810:-163.161,-15.3525,0	1/1:95:0,95:0:0:95:3370:-303.509,-28.5979,0	1/1:138:0,138:0:0:138:4903:-441.421,-41.5421,0	1/1:98:0,98:0:0:98:3499:-315.049,-29.5009,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:33:0,33:0:0:33:1187:-107.139,-9.93399,0	1/1:39:1,38:1:36:38:1368:-119.823,-8.1419,0	0/1:20:3,17:3:108:17:604:-48.67,0,-4.05457	1/1:111:0,111:0:0:111:3968:-357.298,-33.4143,0	0/1:49:20,29:20:712:29:1040:-79.1639,0,-49.6562	0/1:100:33,67:33:1176:67:2380:-184.083,0,-76.0448	1/1:143:0,143:0:0:143:5106:-459.647,-43.0473,0	1/1:82:0,82:0:0:82:2928:-263.698,-24.6845,0	1/1:88:1,87:1:36:87:3104:-275.988,-22.8924,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:80:0,80:0:0:80:2845:-256.289,-24.0824,0	1/1:103:0,102:0:0:102:3660:-329.243,-30.7051,0	1/1:109:0,109:0:0:109:3883:-349.593,-32.8123,0	1/1:35:0,35:0:0:35:1240:-111.903,-10.5361,0	1/1:68:0,68:0:0:68:2433:-219.225,-20.47,0	0/1:40:17,23:17:604:23:815:-61.6214,0,-42.6494	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:57:0,57:0:0:57:2031:-183.062,-17.1587,0	1/1:53:0,53:0:0:53:1883:-169.748,-15.9546,0	0/1:78:51,27:51:1812:27:948:-61.7806,0,-139.881	0/1:30:21,9:21:709:9:324:-20.475,0,-55.093	1/1:54:0,54:0:0:54:1939:-174.773,-16.2556,0	1/1:78:0,78:0:0:78:2780:-250.43,-23.4803,0
chr06	10586470	.	G	C	60380.9	PASS	AB=0.437521;ABP=310.986;AC=44;AF=0.234043;AN=188;AO=4015;CIGAR=1X;DP=23238;DPB=23238;DPRA=1.10597;EPP=8721.47;EPPR=41690.9;GTI=6;LEN=1;MEANALT=1.16129;MQM=59.9051;MQMR=59.9774;NS=94;NUMALT=1;ODDS=0.904153;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140120;QR=669395;RO=19206;RPL=0;RPP=8721.47;RPPR=41621.5;RPR=4015;RUN=1;SAF=0;SAP=8721.47;SAR=4015;SRF=8;SRP=41638.9;SRR=19198;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:179:103,76:103:3614:76:2669:-186.569,0,-271.584	0/0:300:300,0:300:10389:0:0:0,-90.309,-934.956	0/1:342:226,116:226:7722:116:4063:-262.898,0,-592.08	0/0:727:727,0:727:25326:0:0:0,-218.849,-2278.69	0/1:184:117,67:117:4055:67:2308:-152.59,0,-309.749	0/1:162:91,71:91:3263:71:2464:-173.243,0,-245.123	0/0:412:412,0:412:14338:0:0:0,-124.024,-1289.97	0/1:379:169,210:169:5899:210:7344:-546.704,0,-416.937	0/1:342:223,119:223:7692:119:4167:-272.262,0,-589.322	0/1:237:114,123:114:3978:123:4275:-313.587,0,-286.867	0/1:60:19,41:19:638:41:1424:-110.391,0,-39.6711	0/0:162:162,0:162:5525:0:0:0,-48.7669,-497.395	0/1:113:54,59:54:1840:59:2079:-153.364,0,-131.859	0/1:77:42,35:42:1471:35:1226:-87.4629,0,-109.133	0/0:104:104,0:104:3609:0:0:0,-31.3071,-325.022	0/1:93:50,43:50:1711:43:1453:-103.06,0,-126.276	0/0:42:41,0:41:1421:0:0:0,-12.3422,-127.824	0/0:45:45,0:45:1521:0:0:0,-13.5463,-137.173	0/0:28:28,0:28:960:0:0:0,-8.42884,-86.7077	0/0:471:471,0:471:16456:0:0:0,-141.785,-1480.74	0/1:378:205,173:205:7173:173:6041:-429.883,0,-531.84	0/0:309:308,0:308:10847:0:0:0,-92.7172,-975.785	0/1:325:192,133:192:6746:133:4673:-322.809,0,-509.387	0/1:289:138,151:138:4800:151:5317:-391.672,0,-345.163	0/1:286:156,130:156:5403:130:4592:-327.344,0,-400.314	0/0:660:658,1:658:23064:1:36:0,-195.14,-2071.58	0/0:587:586,1:586:20633:1:36:0,-173.106,-1852.9	0/0:58:58,0:58:2009:0:0:0,-17.4597,-181.082	0/1:707:428,279:428:14951:279:9756:-664.902,0,-1132.52	0/1:661:430,231:430:14945:231:8121:-531.936,0,-1145.79	0/0:413:405,8:405:14126:8:284:0,-98.422,-1245.19	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:22:22,0:22:763:0:0:0,-6.62266,-68.9885	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:23:23,0:23:774:0:0:0,-6.92369,-69.9668	0/1:253:141,112:141:4911:112:3861:-271.532,0,-365.988	0/0:396:395,1:395:13720:1:36:0,-115.61,-1231.02	0/0:51:51,0:51:1777:0:0:0,-15.3525,-160.211	0/1:11:6,5:6:207:5:180:-13.2407,0,-15.6556	0/0:494:494,0:494:17253:0:0:0,-148.709,-1552.43	0/0:33:33,0:33:1140:0:0:0,-9.93399,-102.903	0/1:429:240,188:240:8367:188:6527:-458.307,0,-623.839	0/1:81:36,45:36:1224:45:1570:-117.206,0,-86.0744	0/1:84:38,45:38:1293:45:1575:-116.838,0,-91.4651	0/1:450:307,142:307:10746:142:4956:-310.442,0,-831.544	0/1:245:99,146:99:3500:146:5136:-388.633,0,-241.459	0/0:447:443,4:443:15451:4:140:0,-121.616,-1377.38	0/0:424:421,2:421:14710:2:72:0,-120.832,-1316.85	0/1:281:171,110:171:6044:110:3829:-260.217,0,-459.479	0/1:471:262,207:262:9081:207:7200:-506.523,0,-675.742	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	0/0:348:348,0:348:12184:0:0:0,-104.758,-1096.43	0/0:436:435,1:435:15229:1:36:0,-127.651,-1366.76	0/1:36:15,21:15:523:21:735:-55.6343,0,-36.5614	0/1:440:252,188:252:8788:188:6564:-458.383,0,-658.463	0/0:268:268,0:268:9353:0:0:0,-80.676,-841.75	0/1:10:4,6:4:126:6:216:-16.7802,0,-8.64111	0/1:27:11,16:11:396:16:559:-42.5098,0,-27.8549	0/1:273:161,112:161:5560:112:3936:-272.255,0,-418.275	0/0:140:139,1:139:4739:1:32:0,-38.9449,-423.482	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	0/0:607:606,0:606:21227:0:0:0,-182.424,-1909.58	0/0:526:517,7:517:18037:7:244:0,-135.798,-1600.65	0/0:276:276,0:276:9626:0:0:0,-83.0843,-866.311	0/0:296:295,0:295:10324:0:0:0,-88.8038,-928.736	0/0:474:470,3:470:16409:3:108:0,-132.672,-1466.44	0/0:294:292,2:292:10172:2:68:0,-82.0451,-908.977	0/0:41:41,0:41:1412:0:0:0,-12.3422,-127.373	0/0:189:187,1:187:6542:1:36:0,-53.3552,-585.258	0/0:55:55,0:55:1897:0:0:0,-16.5566,-171.004	0/1:67:37,30:37:1267:30:1046:-74.2769,0,-94.1573	0/0:750:749,0:749:25926:0:0:0,-225.471,-2331.86	0/1:298:174,124:174:6098:124:4347:-301.681,0,-459.222	0/1:411:221,190:221:7713:190:6546:-465.501,0,-570.493	0/0:490:490,0:490:17117:0:0:0,-147.505,-1540.21	0/0:383:380,2:380:13268:2:72:0,-108.517,-1187.11	0/0:301:299,2:299:10449:2:56:0,-85.2922,-934.946	0/1:20:14,6:14:473:6:203:-12.5806,0,-36.8704	0/0:225:224,1:224:7863:1:32:0,-64.5324,-704.509	0/0:366:366,0:366:12745:0:0:0,-110.177,-1146.9	0/0:504:503,1:503:17629:1:36:0,-148.121,-1582.66	0/0:85:85,0:85:2972:0:0:0,-25.5875,-267.715	0/0:118:118,0:118:4131:0:0:0,-35.5215,-371.983	0/1:75:38,37:38:1318:37:1278:-92.7392,0,-96.3406	0/0:178:176,2:176:6054:2:59:0,-47.9792,-539.377	0/1:42:13,29:13:449:29:1019:-79.378,0,-28.0942	0/0:90:90,0:90:3027:0:0:0,-27.0927,-272.662	0/0:139:139,0:139:4754:0:0:0,-41.8432,-428.032	0/0:50:50,0:50:1745:0:0:0,-15.0515,-157.329	0/1:102:44,58:44:1527:58:2008:-150.287,0,-107.013	0/1:130:48,82:48:1652:82:2790:-212.207,0,-109.83	0/0:184:183,1:183:6420:1:36:0,-51.7912,-574.296	0/0:134:134,0:134:4636:0:0:0,-40.338,-417.416
chr06	10586482	.	C	T	51859.2	PASS	AB=0.409468;ABP=621.083;AC=43;AF=0.228723;AN=188;AO=3606;CIGAR=1X;DP=22865;DPB=22865;DPRA=1.46945;EPP=7815.98;EPPR=41760.4;GTI=7;LEN=1;MEANALT=1.0597;MQM=59.8683;MQMR=59.9763;NS=94;NUMALT=1;ODDS=5.62261;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125619;QR=683257;RO=19250;RPL=2;RPP=7815.98;RPPR=41699.7;RPR=3604;RUN=1;SAF=0;SAP=7833.34;SAR=3606;SRF=7;SRP=41743.1;SRR=19243;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:164:104,60:104:3709:60:2113:-141.069,0,-284.642	0/0:301:301,0:301:10639:0:0:0,-90.61,-957.35	0/1:330:228,102:228:8049:102:3530:-218.572,0,-625.087	0/0:732:731,1:731:25978:1:36:0,-216.756,-2333.7	0/1:175:116,59:116:4143:59:2036:-130.828,0,-320.369	0/1:158:93,65:93:3310:65:2289:-158.697,0,-250.556	0/0:404:402,2:402:14230:2:68:0,-115.158,-1273.78	0/1:351:171,180:171:6081:180:6255:-456.981,0,-441.734	0/1:323:218,103:218:7726:103:3580:-225.405,0,-598.387	0/1:221:116,105:116:4130:105:3683:-265.149,0,-305.357	0/1:65:21,44:21:743:44:1505:-116.173,0,-47.6264	0/0:166:166,0:166:5855:0:0:0,-49.971,-527.067	0/1:106:57,49:57:1986:49:1675:-119.121,0,-147.099	0/1:79:43,36:43:1501:36:1222:-86.4883,0,-110.579	0/0:105:105,0:105:3711:0:0:0,-31.6081,-334.193	0/1:91:53,38:53:1825:38:1302:-90.0837,0,-137.133	0/0:39:39,0:39:1363:0:0:0,-11.7402,-122.965	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.29	0/0:27:27,0:27:939:0:0:0,-8.12781,-84.8199	0/0:478:477,0:477:16988:0:0:0,-143.591,-1528.18	0/1:369:206,163:206:7355:163:5693:-401.368,0,-550.916	0/0:318:318,0:318:11304:0:0:0,-95.7275,-1017.25	0/1:309:194,115:194:6908:115:4038:-270.594,0,-528.613	0/1:269:140,129:140:4958:129:4494:-323.658,0,-365.394	0/1:273:153,120:153:5391:120:4220:-297.804,0,-403.131	0/0:659:658,1:658:23399:1:36:0,-194.78,-2101.69	0/0:589:588,1:588:20867:1:36:0,-173.708,-1873.82	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:682:430,252:430:15306:252:8824:-588.864,0,-1171.95	0/1:632:429,203:429:15225:203:7111:-449.587,0,-1179.73	0/0:419:413,6:413:14639:6:207:0,-107.165,-1298.25	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:247:139,108:139:4912:108:3760:-264.252,0,-367.879	0/0:393:392,1:392:13959:1:36:0,-114.707,-1252.49	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.509	0/1:12:6,6:6:216:6:208:-15.4467,0,-16.1782	0/0:493:491,2:491:17456:2:68:0,-141.95,-1564.22	0/0:34:34,0:34:1189:0:0:0,-10.235,-107.313	0/1:414:240,174:240:8507:174:6004:-415.408,0,-641.007	0/1:68:34,34:34:1189:34:1172:-85.3139,0,-86.8429	0/1:86:36,50:36:1278:50:1702:-127.567,0,-89.4331	0/1:434:310,124:310:11040:124:4341:-260.149,0,-862.743	0/1:238:107,131:107:3787:131:4570:-339.779,0,-269.384	0/0:445:442,3:442:15698:3:104:0,-124.256,-1402.83	0/0:429:428,1:428:15205:1:36:0,-125.544,-1364.58	0/1:284:177,107:177:6313:107:3766:-253.65,0,-482.771	0/1:456:257,199:257:9106:199:6946:-487.954,0,-682.25	0/1:9:4,5:4:125:5:161:-12.0973,0,-8.84935	0/0:350:349,1:349:12447:1:32:0,-102.161,-1116.87	0/0:441:439,2:439:15605:2:72:0,-125.918,-1397.33	0/1:35:16,19:16:572:19:672:-50.2708,0,-41.2774	0/1:416:250,166:250:8885:166:5820:-398.684,0,-674.406	0/0:266:265,1:265:9377:1:36:0,-76.4757,-840.299	0/1:10:4,6:4:135:6:216:-16.7802,0,-9.47221	0/1:26:11,15:11:396:15:528:-40.0246,0,-28.156	0/1:266:165,100:165:5852:100:3480:-233.433,0,-446.794	0/0:137:136,1:136:4777:1:36:0,-37.6428,-426.492	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:611:611,0:611:21669:0:0:0,-183.929,-1949.67	0/0:527:517,9:517:18378:9:312:0,-130.285,-1625.2	0/0:276:276,0:276:9757:0:0:0,-83.0843,-878.083	0/0:295:294,1:294:10428:1:32:0,-85.6045,-935.243	0/0:473:467,6:467:16616:6:208:0,-123.328,-1476.01	0/0:293:292,1:292:10375:1:36:0,-84.6035,-930.079	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/0:185:182,1:182:6430:1:36:0,-51.8351,-575.223	0/0:55:55,0:55:1952:0:0:0,-16.5566,-175.953	0/1:61:37,24:37:1311:24:835:-57.1012,0,-99.928	0/0:744:743,0:743:26342:0:0:0,-223.665,-2369.16	0/1:278:175,103:175:6214:103:3571:-237.895,0,-475.67	0/1:393:216,177:216:7660:177:6144:-434.76,0,-571.136	0/0:496:496,0:496:17604:0:0:0,-149.311,-1583.99	0/0:385:383,2:383:13650:2:68:0,-109.439,-1221.83	0/0:301:299,2:299:10651:2:63:0,-84.6293,-952.435	0/1:22:15,7:15:531:7:252:-16.4063,0,-41.4992	0/0:229:227,2:227:8088:2:64:0,-62.8572,-721.858	0/0:364:364,0:364:12950:0:0:0,-109.575,-1165.31	0/0:510:509,1:509:18094:1:36:0,-149.927,-1624.47	0/0:86:85,0:85:2983:0:0:0,-25.5875,-268.344	0/0:119:119,0:119:4203:0:0:0,-35.8226,-378.454	0/1:73:38,35:38:1347:35:1220:-88.1269,0,-99.5543	0/0:175:173,2:173:6121:2:72:0,-45.8435,-544.158	0/1:39:14,25:14:470:25:856:-65.6136,0,-30.8776	0/0:88:88,0:88:3091:0:0:0,-26.4906,-278.416	0/0:132:132,0:132:4693:0:0:0,-39.736,-422.532	0/0:49:49,0:49:1716:0:0:0,-14.7505,-154.722	0/1:97:46,51:46:1626:51:1768:-130.196,0,-117.428	0/1:105:48,57:48:1705:57:1971:-146.057,0,-122.126	0/0:186:186,0:186:6639:0:0:0,-55.9916,-597.591	0/0:132:131,1:131:4628:1:36:0,-36.1377,-413.087
chr06	10586506	.	G	A	415266	PASS	AB=0.551839;ABP=220.04;AC=144;AF=0.765957;AN=188;AO=19266;CIGAR=1X;DP=23486;DPB=23486;DPRA=0;EPP=41786.5;EPPR=9053.96;GTI=5;LEN=1;MEANALT=1.08511;MQM=59.9657;MQMR=59.8839;NS=94;NUMALT=1;ODDS=2.14968;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=687929;QR=150706;RO=4212;RPL=19260;RPP=41786.5;RPPR=9053.96;RPR=6;RUN=1;SAF=0;SAP=41838.6;SAR=19266;SRF=0;SRP=9149.25;SRR=4212;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:180:77,103:77:2764:103:3687:-277.847,0,-194.816	1/1:304:0,304:0:0:304:10825:-974.028,-91.5131,0	0/1:349:122,227:122:4354:227:8037:-618.286,0,-286.973	1/1:724:0,723:0:0:723:25831:-2323.7,-217.645,0	0/1:187:69,118:69:2471:118:4212:-322.962,0,-166.351	0/1:163:70,93:70:2496:93:3313:-249.32,0,-175.797	1/1:409:0,409:0:0:409:14584:-1312.07,-123.121,0	0/1:390:223,167:223:7991:167:5975:-420.365,0,-601.238	0/1:352:126,226:126:4505:226:8100:-622.736,0,-299.623	0/1:245:129,116:129:4611:116:4164:-301.189,0,-341.401	0/1:65:45,20:45:1612:20:706:-44.2972,0,-125.803	1/1:163:0,163:0:0:163:5802:-522.296,-49.0679,0	0/1:118:61,57:61:2170:57:2040:-148.35,0,-160.044	0/1:84:41,43:41:1451:43:1520:-111.486,0,-105.528	1/1:105:0,105:0:0:105:3768:-339.318,-31.6082,0	0/1:94:43,51:43:1548:51:1816:-135.425,0,-111.316	1/1:42:0,42:0:0:42:1503:-135.564,-12.6433,0	1/1:47:0,47:0:0:47:1683:-151.756,-14.1484,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:475:0,475:0:0:475:16959:-1525.95,-142.989,0	0/1:393:185,208:185:6631:208:7395:-547.067,0,-478.433	1/1:315:0,315:0:0:315:11257:-1013.02,-94.8245,0	0/1:334:137,197:137:4885:197:7019:-531.074,0,-339.166	0/1:298:158,140:158:5664:140:4959:-356.755,0,-420.171	0/1:287:132,155:132:4736:155:5503:-408.993,0,-339.99	1/1:663:1,661:1:36:661:23639:-2123.33,-195.973,0	1/1:585:0,585:0:0:585:20916:-1881.9,-176.103,0	1/1:58:0,58:0:0:58:2068:-186.389,-17.4597,0	0/1:719:290,429:290:10363:429:15359:-1165.58,0,-715.873	0/1:676:243,433:243:8682:433:15502:-1191.39,0,-576.859	1/1:418:8,410:8:288:410:14645:-1291.51,-99.5631,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:261:122,139:122:4372:139:4987:-370.407,0,-315.084	1/1:391:1,390:1:36:390:13862:-1243.76,-114.104,0	1/1:51:0,51:0:0:51:1821:-164.171,-15.3525,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:492:1,491:1:32:491:17517:-1572.95,-144.907,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:447:203,244:203:7263:244:8723:-650.274,0,-519.07	0/1:81:48,33:48:1724:33:1169:-81.1322,0,-131.062	0/1:88:52,36:52:1860:36:1296:-90.4533,0,-141.183	0/1:454:149,305:149:5324:305:10899:-844.141,0,-341.915	0/1:258:151,107:151:5402:107:3821:-266.421,0,-408.643	1/1:452:7,445:7:252:445:15923:-1409.73,-113.037,0	1/1:425:2,422:2:72:422:15075:-1349.63,-121.16,0	0/1:290:116,174:116:4151:174:6189:-469.809,0,-286.472	0/1:475:216,259:216:7747:259:9278:-691.997,0,-554.27	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:350:0,350:0:0:350:12563:-1130.49,-105.361,0	1/1:439:1,438:1:36:438:15669:-1406.15,-128.554,0	0/1:36:20,16:20:712:16:572:-40.9763,0,-53.5696	0/1:451:196,254:196:7028:254:9081:-681.434,0,-496.64	1/1:262:0,262:0:0:262:9363:-842.634,-78.8699,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	0/1:277:116,161:116:4152:161:5718:-431.216,0,-290.478	1/1:141:2,139:2:63:139:4980:-442.363,-36.4621,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:615:0,615:0:0:615:21949:-1974.85,-185.133,0	1/1:526:9,517:9:315:517:18443:-1630.77,-129.655,0	1/1:273:0,273:0:0:273:9765:-878.788,-82.1812,0	1/1:294:0,293:0:0:293:10439:-939.066,-88.2018,0	1/1:482:2,480:2:72:480:17144:-1535.53,-138.26,0	1/1:293:2,291:2:72:291:10316:-921.535,-81.3651,0	1/1:40:0,40:0:0:40:1422:-128.277,-12.0412,0	1/1:190:2,188:2:72:188:6699:-596.152,-50.359,0	1/1:54:0,54:0:0:54:1925:-173.526,-16.2556,0	0/1:67:30,37:30:1076:37:1320:-98.9329,0,-76.9777	1/1:752:0,751:0:0:751:26727:-2404.13,-226.074,0	0/1:299:128,171:128:4596:171:6141:-462.778,0,-323.776	0/1:419:199,220:199:7106:220:7866:-581.834,0,-513.447	1/1:500:0,500:0:0:500:17881:-1608.89,-150.515,0	1/1:384:1,383:1:36:383:13664:-1225.95,-111.997,0	1/1:302:2,300:2:72:300:10701:-956.174,-84.0929,0	0/1:21:7,14:7:252:14:500:-39.0145,0,-16.7073	1/1:228:1,226:1:36:226:8066:-722.361,-65.0954,0	1/1:362:0,362:0:0:362:12880:-1159.02,-108.973,0	1/1:509:1,507:1:36:507:18133:-1628.04,-149.61,0	1/1:85:0,85:0:0:85:3035:-273.38,-25.5876,0	1/1:118:0,118:0:0:118:4239:-381.687,-35.5215,0	0/1:78:41,37:41:1468:37:1324:-95.9818,0,-108.936	1/1:174:2,172:2:72:172:6149:-546.671,-45.5425,0	0/1:45:32,13:32:1130:13:464:-28.5512,0,-88.4606	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	1/1:136:0,136:0:0:136:4839:-435.665,-40.9401,0	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0	0/1:106:61,45:61:2183:45:1602:-112.559,0,-164.826	0/1:128:81,47:81:2900:47:1680:-112.955,0,-222.704	1/1:186:1,185:1:36:185:6620:-592.281,-52.3933,0	1/1:134:0,134:0:0:134:4800:-432.156,-40.338,0
chr06	10675079	.	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chr06	10675151	.	C	T	22990.3	PASS	AB=0.509152;ABP=4.95789;AC=44;AF=0.234043;AN=188;AO=1377;CIGAR=1X;DP=6067;DPB=6067;DPRA=1.12079;EPP=2993.13;EPPR=10178.5;GTI=1;LEN=1;MEANALT=1.05769;MQM=59.9855;MQMR=59.9989;NS=94;NUMALT=1;ODDS=2.13503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49200;QR=167876;RO=4686;RPL=0;RPP=2993.13;RPPR=10178.5;RPR=1377;RUN=1;SAF=1377;SAP=2993.13;SAR=0;SRF=4686;SRP=10178.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:23,20:23:824:20:716:-51.6064,0,-61.3229	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.361	0/1:95:52,43:52:1864:43:1540:-110.295,0,-139.442	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/1:38:13,25:13:468:25:896:-69.5212,0,-31.0205	0/1:55:31,24:31:1112:24:856:-60.8045,0,-83.8347	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/1:133:66,67:66:2372:67:2381:-174.509,0,-173.701	0/1:112:54,58:54:1944:58:2050:-151.053,0,-141.521	0/1:106:56,50:56:2004:50:1796:-130.013,0,-148.724	0/1:56:24,32:24:864:32:1148:-86.7722,0,-61.2249	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:76:36,40:36:1288:40:1436:-106.659,0,-93.3453	0/1:48:22,26:22:792:26:932:-69.7494,0,-57.1562	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:50:19,31:19:684:31:1097:-83.9865,0,-46.8388	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/1:130:56,74:56:2004:74:2615:-196.46,0,-141.5	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:70:33,37:33:1184:37:1313:-97.3985,0,-85.7962	0/1:106:61,45:61:2188:45:1612:-113.461,0,-165.277	0/1:46:25,21:25:896:21:743:-53.346,0,-67.113	0/0:184:183,1:183:6552:1:36:0,-51.7912,-586.164	0/0:148:148,0:148:5304:0:0:0,-44.5524,-477.494	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:136:56,80:56:2016:80:2876:-218.136,0,-140.773	0/1:56:31,25:31:1116:25:890:-63.5614,0,-83.894	0/0:71:70,1:70:2512:1:36:0,-17.7749,-222.734	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:175:90,85:90:3232:85:3052:-222.229,0,-238.421	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:80:30,50:30:1076:50:1777:-136.127,0,-73.0705	0/1:89:41,48:41:1472:48:1697:-126.222,0,-105.984	0/1:68:38,30:38:1368:30:1076:-76.6828,0,-102.951	0/1:65:41,24:41:1464:24:860:-58.1549,0,-112.489	0/1:74:46,28:46:1648:28:1004:-68.3996,0,-126.332	0/0:78:76,2:76:2728:2:72:0,-16.6436,-238.926	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/1:89:48,40:48:1713:40:1432:-102.327,0,-127.603	0/1:106:53,53:53:1908:53:1885:-138.017,0,-140.088	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:61:26,35:26:932:35:1260:-95.3427,0,-65.836	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/1:36:19,17:19:680:17:608:-44.2149,0,-50.6921	0/0:74:73,1:73:2608:1:36:0,-18.6779,-231.37	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.427	0/0:115:113,2:113:4033:2:72:0,-27.7817,-356.321	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:52:51,1:51:1828:1:36:0,-12.0553,-161.203	0/0:125:124,1:124:4425:1:36:0,-34.0305,-394.823	0/0:46:45,0:45:1612:0:0:0,-13.5463,-145.01	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:59:24,35:24:856:35:1252:-95.2243,0,-59.6003	0/1:123:59,63:59:2104:63:2268:-167.444,0,-152.692	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.352	0/0:91:90,1:90:3220:1:36:0,-23.7955,-286.424	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:56:55,1:55:1972:1:36:0,-13.2594,-174.157	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:95:49,46:49:1752:46:1656:-120.731,0,-129.366	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.732	0/1:25:16,9:16:567:9:323:-21.8893,0,-43.835	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:41:23,18:23:824:18:648:-46.2397,0,-62.1411	0/1:59:21,38:21:756:38:1357:-104.669,0,-50.6065	0/0:48:48,0:48:1697:0:0:0,-14.4494,-153.014	0/0:103:103,0:103:3677:0:0:0,-31.0061,-331.132
chr06	10675208	.	C	T	53474.7	PASS	AB=0.511454;ABP=8.18357;AC=45;AF=0.239362;AN=188;AO=2362;CIGAR=1X;DP=10799;DPB=10799;DPRA=1.07192;EPP=145.724;EPPR=150.604;GTI=4;LEN=1;MEANALT=1.05556;MQM=59.9407;MQMR=59.9955;NS=94;NUMALT=1;ODDS=0.505168;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84072;QR=298074;RO=8431;RPL=2359;RPP=5106;RPPR=18128.7;RPR=3;RUN=1;SAF=1375;SAP=141.411;SAR=987;SRF=4573;SRP=134.68;SRR=3858;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:35,37:35:1248:37:1328:-98.1481,0,-90.9507	0/0:154:154,0:154:5477:0:0:0,-46.3586,-493.06	0/1:196:109,87:109:3831:87:3098:-220.045,0,-285.985	0/0:176:175,1:175:6150:1:36:0,-49.383,-550.007	0/1:58:25,33:25:892:33:1165:-87.6953,0,-63.1399	0/1:88:45,43:45:1585:43:1525:-111.026,0,-116.448	0/0:140:140,0:140:4974:0:0:0,-42.1442,-447.809	0/1:206:106,100:106:3777:100:3552:-257.876,0,-278.116	0/1:165:72,93:72:2525:93:3235:-241.697,0,-177.832	0/1:148:80,68:80:2851:68:2432:-174.583,0,-212.276	0/1:101:45,55:45:1599:55:1955:-145.762,0,-113.737	0/0:149:149,0:149:5299:0:0:0,-44.8535,-477.046	0/1:134:67,67:67:2379:67:2368:-173.039,0,-174.03	0/1:75:34,41:34:1207:41:1445:-107.767,0,-86.358	0/0:126:126,0:126:4481:0:0:0,-37.9298,-403.461	0/1:96:46,50:46:1627:50:1792:-132.664,0,-117.819	0/0:99:99,0:99:3475:0:0:0,-29.802,-312.962	0/0:88:88,0:88:3121:0:0:0,-26.4906,-281.117	0/0:73:72,0:72:2558:0:0:0,-21.6742,-230.149	0/0:218:218,0:218:7747:0:0:0,-65.6245,-697.267	0/1:205:80,125:80:2759:125:4453:-339.23,0,-186.839	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/1:108:53,55:53:1857:55:1942:-142.541,0,-134.894	0/1:129:72,57:72:2532:57:2044:-145.399,0,-189.295	0/1:85:53,32:53:1882:32:1148:-78.0423,0,-144.07	0/0:299:298,1:298:10594:1:36:0,-86.4097,-949.779	0/0:246:246,0:246:8659:0:0:0,-74.0534,-779.311	0/0:67:67,0:67:2339:0:0:0,-20.169,-210.768	0/1:257:111,146:111:3914:146:5218:-392.393,0,-275.088	0/1:108:48,60:48:1691:60:2132:-159.637,0,-119.964	0/0:104:102,1:102:3591:1:36:0,-27.7676,-319.798	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:11:1,10:1:21:10:360:-30.6444,-1.21138,0	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:321:160,160:160:5643:160:5732:-419.307,0,-411.306	0/0:67:67,0:67:2342:0:0:0,-20.169,-211.037	0/0:92:92,0:92:3249:0:0:0,-27.6948,-292.63	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:128:128,0:128:4496:0:0:0,-38.5318,-404.813	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/1:180:77,103:77:2717:103:3667:-276.046,0,-190.588	0/1:123:59,64:59:2104:64:2279:-168.345,0,-152.603	0/1:121:64,57:64:2254:57:2044:-147.807,0,-166.698	0/1:106:65,41:65:2262:41:1472:-100.867,0,-171.929	0/1:136:85,51:85:3031:51:1820:-123.141,0,-232.08	0/0:161:159,2:159:5606:2:72:0,-41.6291,-497.829	0/0:102:101,0:101:3557:0:0:0,-30.404,-319.979	0/1:139:71,68:71:2508:68:2436:-177.652,0,-184.128	0/1:167:81,86:81:2835:86:3059:-225.268,0,-205.117	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:121:121,0:121:4317:0:0:0,-36.4246,-388.706	0/0:44:44,0:44:1556:0:0:0,-13.2453,-140.329	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/1:161:68,93:68:2381:93:3297:-248.483,0,-166.082	0/0:61:61,0:61:2148:0:0:0,-18.3628,-193.586	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	0/1:90:40,50:40:1420:50:1770:-132.489,0,-101.005	0/0:146:144,2:144:5129:2:72:0,-37.1137,-454.916	0/1:9:4,5:4:136:5:180:-13.8428,0,-9.86627	0/0:172:172,0:172:6106:0:0:0,-51.7772,-549.643	0/0:227:224,3:224:7961:3:108:0,-58.2586,-706.441	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.486	0/0:97:97,0:97:3403:0:0:0,-29.1999,-306.48	0/0:201:198,3:198:6965:3:108:0,-50.4319,-616.846	0/0:89:89,0:89:3166:0:0:0,-26.7917,-285.165	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/0:66:66,0:66:2339:0:0:0,-19.868,-210.77	0/0:129:129,0:129:4570:0:0:0,-38.8329,-411.47	0/1:21:11,10:11:387:10:332:-23.8785,0,-28.8443	0/0:103:101,2:101:3525:2:72:0,-24.1694,-310.626	0/1:96:43,53:43:1528:53:1879:-140.481,0,-108.914	0/1:201:99,102:99:3515:102:3618:-265.237,0,-256.055	0/0:157:157,0:157:5599:0:0:0,-47.2617,-504.034	0/0:130:130,0:130:4595:0:0:0,-39.1339,-413.717	0/0:175:174,1:174:6125:1:36:0,-49.082,-547.758	0/1:15:9,6:9:301:6:216:-15.2751,0,-22.8983	0/0:120:118,2:118:4186:2:72:0,-29.2869,-370.088	0/0:108:108,0:108:3843:0:0:0,-32.5112,-346.068	0/0:225:225,0:225:7943:0:0:0,-67.7317,-714.901	0/0:111:110,1:110:3899:1:36:0,-29.8161,-347.506	0/0:111:111,0:111:3936:0:0:0,-33.4143,-354.433	0/1:143:72,71:72:2551:71:2548:-186.523,0,-186.791	0/0:230:230,0:230:8149:0:0:0,-69.2369,-733.41	0/1:37:20,17:20:697:17:583:-41.4228,0,-51.9126	0/0:102:102,0:102:3578:0:0:0,-30.7051,-322.23	0/0:94:94,0:94:3337:0:0:0,-28.2968,-300.534	0/0:65:64,0:64:2255:0:0:0,-19.2659,-202.854	0/1:100:51,49:51:1795:49:1744:-127.112,0,-131.726	0/1:113:44,69:44:1563:69:2480:-189.437,0,-106.945	0/0:138:138,0:138:4847:0:0:0,-41.5421,-436.389	0/0:207:207,0:207:7286:0:0:0,-62.3132,-655.799
chr06	10688138	.	A	G	26255.3	PASS	AB=0.456765;ABP=59.5278;AC=44;AF=0.236559;AN=186;AO=1616;CIGAR=1X;DP=7509;DPB=7509;DPRA=1.01998;EPP=3442.97;EPPR=1246.48;GTI=2;LEN=1;MEANALT=1;MQM=59.3552;MQMR=59.8956;NS=93;NUMALT=1;ODDS=3.41831;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57500;QR=210764;RO=5893;RPL=1608;RPP=3442.97;RPPR=12583.3;RPR=8;RUN=1;SAF=0;SAP=3512.11;SAR=1616;SRF=2005;SRP=1309.54;SRR=3888;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:12,7:12:428:7:252:-17.2639,0,-33.1392	0/0:42:41,1:41:1472:1:36:0,-9.04498,-129.176	0/1:48:24,24:24:864:24:856:-62.9099,0,-63.6331	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.188	0/1:20:16,4:16:576:4:144:-7.29062,0,-46.151	0/1:20:15,5:15:532:5:180:-10.5315,0,-42.1859	0/0:57:56,1:56:2004:1:36:0,-13.5604,-177.035	0/1:45:29,16:29:1040:16:576:-38.5835,0,-80.368	0/1:43:29,14:29:1036:14:504:-32.7087,0,-80.6081	0/1:24:16,8:16:576:8:288:-19.0364,0,-44.9503	0/1:172:92,80:92:3297:80:2836:-203.664,0,-245.169	0/0:122:122,0:122:4363:0:0:0,-36.7257,-392.805	0/1:88:66,22:66:2360:22:788:-44.6182,0,-186.165	0/1:52:40,12:40:1431:12:419:-22.3327,0,-113.433	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.615	0/1:65:36,29:36:1296:29:1040:-74.2621,0,-97.3546	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.362	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.84	0/0:141:141,0:141:5047:0:0:0,-42.4452,-454.33	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:35:17,18:17:612:18:636:-47.0035,0,-44.8774	0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4154	0/1:40:20,20:20:716:20:712:-52.3655,0,-52.7265	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6607	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:25:23,2:23:828:2:72:0,-0.689027,-68.0074	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.398	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:14:5,9:5:180:9:324:-25.2852,0,-12.3376	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.195	0/1:276:149,127:149:5332:127:4535:-325.12,0,-396.51	0/0:125:122,3:122:4380:3:104:0,-27.9259,-384.669	0/1:188:89,99:89:3188:99:3488:-257.395,0,-230.55	0/1:387:223,164:223:8004:164:5842:-408.985,0,-603.875	0/0:217:217,0:217:7760:0:0:0,-65.3235,-698.426	0/1:121:72,49:72:2576:49:1748:-121.157,0,-195.663	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.126	0/0:213:212,1:212:7572:1:36:0,-60.5211,-677.814	0/1:188:99,89:99:3538:89:3155:-227.516,0,-262.028	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.588	0/0:135:135,0:135:4821:0:0:0,-40.639,-434.044	0/1:22:19,3:19:684:3:108:-3.45251,0,-55.2677	0/1:50:35,15:35:1251:15:531:-33.0063,0,-97.8428	0/1:63:45,18:45:1608:18:633:-38.3218,0,-126.034	0/1:28:22,6:22:788:6:216:-11.3534,0,-62.816	0/1:13:6,7:6:216:7:248:-18.5902,0,-15.8756	0/0:63:62,1:62:2216:1:36:0,-15.3666,-196.104	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.86	0/1:22:14,8:14:504:8:284:-19.2807,0,-39.0754	1/1:17:1,16:1:36:16:567:-47.7625,-1.51924,0	0/1:176:81,95:81:2886:95:3395:-252.746,0,-206.995	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7654	0/1:61:32,29:32:1152:29:1031:-74.5886,0,-85.5989	0/1:37:15,22:15:528:22:783:-59.6453,0,-36.7133	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9804	0/1:131:54,77:54:1936:77:2733:-206.767,0,-134.924	0/1:112:54,58:54:1940:58:2068:-152.651,0,-141.161	0/1:14:6,8:6:216:8:279:-21.2331,0,-15.5761	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.781	0/1:99:54,45:54:1940:45:1612:-115.533,0,-145.057	0/0:132:132,0:132:4718:0:0:0,-39.736,-424.716	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.493	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0967	.:.:.:.:.:.:.:.	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:279:279,0:279:9971:0:0:0,-83.9874,-897.261	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0316	0/0:97:97,0:97:3471:0:0:0,-29.1999,-312.601	0/1:67:13,54:13:459:54:1915:-152.024,0,-21.4751	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:24:16,8:16:560:8:282:-18.4811,0,-43.4565	0/1:70:55,15:55:1976:15:536:-27.4742,0,-157.042	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/0:51:50,1:50:1747:1:36:0,-11.7543,-153.89	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:107:23,84:23:819:84:2978:-235.912,0,-41.8214	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/0:84:84,0:84:3000:0:0:0,-25.2865,-270.232	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.526	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.342	0/1:44:37,7:37:1320:7:244:-9.05411,0,-105.857	0/0:161:161,0:161:5731:0:0:0,-48.4658,-515.874	0/1:23:18,5:18:648:5:167:-8.43472,0,-51.6816	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.15	0/0:276:276,0:276:9867:0:0:0,-83.0843,-887.967	0/1:370:189,181:189:6727:181:6447:-468.684,0,-494.123	0/1:67:36,31:36:1288:31:1116:-80.5827,0,-96.0546	0/0:182:182,0:182:6516:0:0:0,-54.7875,-586.478	0/0:153:153,0:153:5488:0:0:0,-46.0576,-494.041
chr06	10688275	.	ACAT	ACAA,GCAA	179357	PASS	AB=0.521976,0.475296;ABP=16.8494,20.4986;AC=141,47;AF=0.75,0.25;AN=188;AO=6678,1604;CIGAR=3M1X,1X2M1X;DP=8307;DPB=8306.75;DPRA=45.125,0.785799;EPP=14495.4,3460.04;EPPR=9.52472;GTI=8;LEN=1,4;MEANALT=1.94565,2.17647;MQM=58.9263,47.2818;MQMR=60;NS=94;NUMALT=2;ODDS=0.897892;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=239066,56594;QR=102;RO=3;RPL=6677,1603;RPP=14495.4,3477.37;RPPR=9.52472;RPR=1,1;RUN=1,1;SAF=6678,1602;SAP=14504.1,3468.7;SAR=0,2;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:61:0,32,29:0:0:32,29:1152,1019:-177.012,-83.01,-73.377,-94.3572,0,-85.6273	1/1:73:0,73,0:0:0:73,0:2620,0:-236.007,-21.9752,0,-236.007,-21.9752,-236.007	1/2:47:0,27,19:0:0:27,19:972,675:-134.183,-54.8886,-46.7608,-79.3632,0,-73.6437	1/1:213:0,211,1:0:0:211,1:7580,31:-681.886,-63.5173,0,-679.504,-61.1594,-679.203	1/2:55:0,23,32:0:0:23,32:828,1135:-157.608,-90.1152,-83.1915,-67.846,0,-58.2131	1/2:76:0,37,39:0:0:37,39:1332,1388:-221.142,-112.56,-101.422,-108.938,0,-97.198	1/1:117:0,117,0:0:0:117,0:4185,0:-376.751,-35.2205,0,-376.751,-35.2205,-376.751	1/2:157:0,88,69:0:0:88,69:3156,2441:-455.616,-198.25,-171.759,-257.721,0,-236.95	1/2:199:0,127,72:0:0:127,72:4480,2496:-566.856,-202.16,-163.93,-365.044,0,-343.369	1/2:69:0,25,44:0:0:25,44:896,1557:-199.36,-126.305,-118.779,-73.4111,0,-60.1658	1/2:58:0,30,28:0:0:30,28:1080,985:-168.056,-79.9386,-70.9077,-88.4717,0,-80.0429	1/1:50:0,50,0:0:0:50,0:1783,0:-160.401,-15.0515,0,-160.401,-15.0515,-160.401	1/2:53:0,35,17:0:0:35,17:1247,601:-150.415,-48.7817,-38.2456,-101.629,0,-96.5113	1/2:135:0,63,71:0:0:63,71:2264,2506:-383.706,-199.306,-180.341,-184.474,0,-163.101	1/1:32:0,31,1:0:0:31,1:1116,35:-100.362,-9.33193,0,-97.5433,-6.16615,-97.2423	1/2:22:0,13,9:0:0:13,9:464,312:-62.9748,-25.2943,-21.3809,-38.0277,0,-35.3184	1/1:80:0,79,1:0:0:79,1:2836,36:-255.111,-23.7814,0,-252.209,-20.5238,-251.908	1/1:40:0,38,2:0:0:38,2:1352,72:-121.614,-11.4391,0,-115.811,-5.27983,-115.209	1/1:27:1,25,1:1:36:25,1:888,36:-76.6208,-4.58635,0,-74.0201,-4.62601,-76.6567	1/1:235:0,234,1:0:0:234,1:8355,30:-751.486,-70.441,0,-749.09,-67.7455,-748.789	1/2:106:0,62,44:0:0:62,44:2215,1543:-303.341,-122.985,-104.321,-180.705,0,-167.46	1/1:90:0,89,0:0:0:89,0:3188,0:-286.761,-26.7917,0,-286.761,-26.7917,-286.761	1/2:30:0,19,11:0:0:19,11:680,390:-87.4127,-31.9577,-26.2381,-55.8096,0,-52.4983	1/2:96:0,50,46:0:0:50,46:1788,1629:-275.767,-130.176,-115.124,-145.943,0,-132.095	1/2:56:0,32,24:0:0:32,24:1148,832:-159.854,-66.3208,-56.6879,-93.8801,0,-86.6554	1/1:340:0,340,0:0:0:340,0:12169,0:-1093.46,-102.35,0,-1093.46,-102.35,-1093.46	1/1:162:1,160,1:1:36:160,1:5721,36:-510.311,-45.2235,0,-507.744,-45.3008,-510.38	1/1:10:0,10,0:0:0:10,0:360,0:-32.7303,-3.0103,0,-32.7303,-3.0103,-32.7303	1/2:311:0,153,158:0:0:153,158:5473,5552:-896.616,-450.366,-404.309,-446.604,0,-399.041	1/2:165:0,73,91:0:0:73,91:2624,3206:-466.734,-252.831,-230.856,-213.995,0,-186.601	1/1:154:0,154,0:0:0:154,0:5524,0:-497.08,-46.3586,0,-497.08,-46.3586,-497.08	1/2:2:0,1,1:0:0:1,1:36,36:-6.15963,-3.21998,-2.91895,-3.29553,0,-2.9945	1/2:14:0,12,2:0:0:12,2:428,69:-40.7631,-5.89346,-2.2811,-35.2135,0,-34.6115	1/2:4:0,1,3:0:0:1,3:36,108:-11.9994,-9.06104,-8.76001,-3.29724,0,-2.39415	1/2:10:0,3,7:0:0:3,7:108,252:-29.6335,-20.8208,-19.9177,-9.17208,0,-7.06487	1/2:12:0,9,3:0:0:9,3:324,107:-35.4174,-8.97536,-6.26609,-26.7966,0,-25.8935	1/2:109:0,63,45:0:0:63,45:2253,1572:-311.105,-127.471,-108.506,-183.673,0,-170.126	1/1:167:0,165,0:0:0:165,0:5913,0:-531.182,-49.67,0,-531.182,-49.67,-531.182	1/1:46:0,45,1:0:0:45,1:1620,36:-145.734,-13.5464,0,-142.832,-10.2888,-142.531	2/2:2:0,0,2:0:0:0,2:0,72:-6.72564,-6.72564,-6.72564,-0.60206,-0.60206,0	1/1:129:0,128,1:0:0:128,1:4577,36:-410.887,-38.5318,0,-408.019,-35.3119,-407.718	1/1:27:0,27,0:0:0:27,0:960,0:-86.6072,-8.12781,0,-86.6072,-8.12781,-86.6072	1/2:120:0,59,61:0:0:59,61:2113,2156:-343.599,-171.392,-153.631,-172.558,0,-154.196	1/2:30:0,17,13:0:0:17,13:612,459:-87.448,-37.5207,-32.4032,-50.2821,0,-46.3688	1/2:36:0,17,19:0:0:17,19:612,661:-103.757,-53.8148,-48.6973,-50.2955,0,-44.5759	1/2:41:0,22,18:0:0:22,18:784,645:-116.388,-52.4809,-45.8582,-63.9783,0,-58.5597	1/2:113:0,58,55:0:0:58,55:2069,1951:-326.538,-157.873,-140.414,-169.019,0,-152.463	1/1:165:0,165,0:0:0:165,0:5912,0:-531.56,-49.67,0,-531.56,-49.67,-531.56	1/1:84:0,82,1:0:0:82,1:2933,36:-263.857,-24.6845,0,-260.955,-21.7645,-260.654	1/2:195:0,110,85:0:0:110,85:3960,3018:-567.433,-244.336,-211.223,-323.453,0,-297.865	1/2:131:0,65,66:0:0:65,66:2320,2337:-379.159,-190.074,-170.507,-189.44,0,-169.572	1/2:16:0,12,4:0:0:12,4:428,144:-46.9289,-12.0401,-8.42773,-35.2464,0,-34.0423	1/1:103:0,103,0:0:0:103,0:3696,0:-332.492,-31.0061,0,-332.492,-31.0061,-332.492	1/1:103:0,102,1:0:0:102,1:3660,36:-329.15,-30.7051,0,-326.249,-27.4475,-325.948	1/2:8:0,4,4:0:0:4,4:140,143:-23.3379,-11.9501,-10.746,-11.7405,0,-10.5363	1/2:110:0,55,54:0:0:55,54:1976,1915:-311.749,-150.84,-134.284,-160.901,0,-144.645	1/1:29:0,29,0:0:0:29,0:1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chr06	10908745	.	C	A	196768	PASS	AB=0.535958;ABP=47.5164;AC=146;AF=0.776596;AN=188;AO=9096;CIGAR=1X;DP=10961;DPB=10961;DPRA=58.9194;EPP=19754.7;EPPR=3972.69;GTI=5;LEN=1;MEANALT=1.08602;MQM=59.9778;MQMR=59.9612;NS=94;NUMALT=1;ODDS=2.00454;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=324346;QR=65634;RO=1856;RPL=0;RPP=19754.7;RPPR=3972.69;RPR=9096;RUN=1;SAF=9096;SAP=19754.7;SAR=0;SRF=1856;SRP=4033.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:19,39:19:672:39:1404:-109.2,0,-43.3471	1/1:125:0,125:0:0:125:4464:-401.931,-37.6288,0	0/1:279:133,146:133:4698:146:5159:-380.466,0,-338.999	1/1:398:0,398:0:0:398:14184:-1276.32,-119.81,0	0/1:47:22,25:22:771:25:868:-64.2846,0,-55.5537	0/1:44:17,27:17:600:27:972:-74.5526,0,-41.0839	1/1:114:0,114:0:0:114:4084:-367.746,-34.3174,0	0/1:198:84,114:84:2975:114:4052:-305.266,0,-208.38	0/1:119:53,66:53:1872:66:2364:-177.196,0,-132.937	0/1:88:51,37:51:1820:37:1324:-92.9715,0,-137.591	0/1:26:12,14:12:420:14:500:-37.5094,0,-30.3072	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	0/1:50:23,27:23:807:27:968:-72.3859,0,-57.8977	0/1:55:30,25:30:1051:25:892:-64.0425,0,-78.343	1/1:57:0,57:0:0:57:2014:-181.53,-17.1587,0	0/1:55:29,26:29:1010:26:928:-67.2816,0,-74.6529	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:339:2,337:2:72:337:12042:-1076.79,-95.2124,0	0/1:181:79,102:79:2796:102:3630:-272.417,0,-197.351	1/1:133:0,133:0:0:133:4708:-423.88,-40.037,0	0/1:188:100,87:100:3522:87:3051:-218.166,0,-260.527	0/1:96:50,46:50:1775:46:1648:-119.71,0,-131.133	0/1:88:48,40:48:1680:40:1428:-102.327,0,-124.996	1/1:339:0,338:0:0:338:12004:-1079.89,-101.748,0	1/1:317:0,317:0:0:317:11345:-1020.91,-95.4265,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:429:179,250:179:6340:250:8922:-673.821,0,-441.556	0/1:184:86,98:86:3064:98:3477:-257.753,0,-220.601	1/1:193:4,189:4:140:189:6749:-594.54,-45.1542,0	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:7:0,7:0:0:7:244:-22.2989,-2.10721,0	0/1:134:63,71:63:2244:71:2548:-189.232,0,-161.886	1/1:134:0,133:0:0:133:4753:-427.716,-40.037,0	1/1:24:0,22:0:0:22:788:-70.8851,-6.62266,0	0/1:6:2,4:2:63:4:144:-11.5074,0,-4.17697	1/1:221:0,221:0:0:221:7928:-713.54,-66.5276,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:241:106,135:106:3744:135:4783:-358.078,0,-264.582	0/1:44:23,21:23:816:21:748:-54.4,0,-60.5164	0/1:40:25,15:25:884:15:529:-35.9002,0,-67.8372	0/1:92:37,55:37:1298:55:1968:-149.7,0,-89.4249	0/1:133:57,76:57:2028:76:2709:-204.016,0,-142.756	1/1:251:5,245:5:176:245:8734:-769.866,-59.431,0	1/1:105:0,105:0:0:105:3764:-338.959,-31.6082,0	0/1:160:75,84:75:2680:84:2993:-221.377,0,-193.222	0/1:158:76,82:76:2692:82:2936:-216.865,0,-194.959	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:191:0,191:0:0:191:6802:-612.252,-57.4967,0	1/1:120:0,120:0:0:120:4312:-388.252,-36.1236,0	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/1:215:101,114:101:3595:114:4072:-301.946,0,-259.036	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:93:47,46:47:1664:46:1656:-121.333,0,-122.052	1/1:57:0,57:0:0:57:2014:-181.53,-17.1587,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:322:0,322:0:0:322:11437:-1029.19,-96.9317,0	1/1:231:2,229:2:72:229:8157:-727.309,-62.7012,0	1/1:79:0,79:0:0:79:2765:-249.074,-23.7814,0	1/1:140:0,140:0:0:140:4995:-449.698,-42.1442,0	1/1:292:3,289:3:104:289:10280:-915.196,-78.198,0	1/1:258:1,256:1:36:256:9078:-813.389,-74.1263,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	0/1:22:10,12:10:347:12:426:-32.0547,0,-24.941	1/1:188:0,188:0:0:188:6748:-607.392,-56.5936,0	0/1:96:35,61:35:1236:61:2188:-168.157,0,-82.6454	0/1:155:72,83:72:2535:83:2968:-220.694,0,-181.743	1/1:312:0,312:0:0:312:11169:-1005.09,-93.9214,0	1/1:129:1,128:1:36:128:4520:-403.366,-35.2346,0	1/1:162:0,162:0:0:162:5778:-520.136,-48.7669,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:168:0,168:0:0:168:5977:-538.034,-50.573,0	1/1:200:0,200:0:0:200:7138:-642.476,-60.206,0	1/1:270:0,270:0:0:270:9657:-869.08,-81.2781,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	0/1:39:16,23:16:572:23:820:-62.3823,0,-40.0733	1/1:107:0,107:0:0:107:3818:-343.817,-32.2102,0	0/1:17:8,9:8:279:9:320:-24.0248,0,-20.33	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:42:20,21:20:704:21:752:-55.3424,0,-51.0209	0/1:55:35,20:35:1208:20:704:-47.1274,0,-92.4632	1/1:261:0,261:0:0:261:9284:-835.524,-78.5688,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0
chr06	10909054	.	G	A	100745	PASS	AB=0.538645;ABP=30.1993;AC=144;AF=0.765957;AN=188;AO=4677;CIGAR=1X;DP=5658;DPB=5658;DPRA=20.2688;EPP=10141.6;EPPR=2128.88;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.9123;MQMR=59.9642;NS=94;NUMALT=1;ODDS=2.95413;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166704;QR=34983;RO=979;RPL=2;RPP=10141.6;RPPR=2128.88;RPR=4675;RUN=1;SAF=0;SAP=10159;SAR=4677;SRF=0;SRP=2128.88;SRR=979;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	1/1:53:0,53:0:0:53:1873:-168.839,-15.9546,0	0/1:107:49,58:49:1741:58:2075:-154.81,0,-124.762	1/1:129:1,128:1:36:128:4557:-406.699,-35.2346,0	0/1:39:21,18:21:748:18:628:-45.103,0,-55.9051	0/1:40:18,22:18:648:22:788:-59.2036,0,-46.6107	1/1:109:2,107:2:72:107:3824:-337.52,-25.9755,0	0/1:49:18,31:18:648:31:1112:-85.6271,0,-43.9014	0/1:41:10,31:10:360:31:1115:-88.3195,0,-20.4021	0/1:68:40,27:40:1436:27:968:-66.9856,0,-109.087	0/1:32:15,17:15:532:17:600:-44.6962,0,-38.5801	1/1:44:0,44:0:0:44:1555:-140.241,-13.2453,0	0/1:48:25,23:25:892:23:828:-60.3938,0,-66.1502	0/1:56:27,29:27:955:29:1040:-77.0567,0,-69.4072	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	0/1:19:5,14:5:180:14:500:-39.6166,0,-10.8325	1/1:47:0,47:0:0:47:1667:-150.317,-14.1484,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:125:0,125:0:0:125:4447:-399.731,-37.6288,0	0/1:114:44,70:44:1576:70:2508:-191.599,0,-107.814	1/1:106:1,105:1:36:105:3728:-332.12,-28.3109,0	0/1:14:3,11:3:108:11:388:-31.0429,0,-5.86075	0/1:94:51,43:51:1817:43:1544:-110.956,0,-135.513	0/1:50:24,26:24:855:26:915:-67.6141,0,-62.2187	1/1:197:1,196:1:36:196:6997:-626.106,-55.7046,0	1/1:98:0,98:0:0:98:3475:-312.961,-29.5009,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:125:56,69:56:2004:69:2450:-183.126,0,-143.005	0/1:59:26,33:26:936:33:1180:-88.7473,0,-66.7941	1/1:92:0,92:0:0:92:3285:-295.868,-27.6948,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:20:0,20:0:0:20:720:-65.1242,-6.0206,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:6:0,6:0:0:6:216:-19.7896,-1.80618,0	0/1:105:54,51:54:1909:51:1828:-133.192,0,-140.477	1/1:111:0,111:0:0:111:3976:-358.03,-33.4143,0	1/1:35:0,35:0:0:35:1246:-112.445,-10.5361,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:68:0,68:0:0:68:2436:-219.467,-20.47,0	1/1:18:0,18:0:0:18:639:-57.5184,-5.41854,0	0/1:91:47,44:47:1679:44:1549:-112.305,0,-124.003	0/1:42:18,24:18:648:24:856:-64.7178,0,-46.0086	0/1:30:20,10:20:716:10:360:-23.7134,0,-55.7368	0/1:68:27,41:27:972:41:1449:-110.234,0,-67.3279	0/1:53:19,34:19:675:34:1220:-94.1522,0,-45.1224	1/1:99:0,99:0:0:99:3525:-317.455,-29.802,0	1/1:101:0,101:0:0:101:3617:-325.733,-30.404,0	0/1:69:30,39:30:1080:39:1392:-104.807,0,-76.7422	0/1:109:41,68:41:1472:68:2420:-185.242,0,-99.4732	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:129:2,127:2:72:127:4537:-401.53,-31.9961,0	1/1:55:0,55:0:0:55:1953:-176.043,-16.5567,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:60:28,32:28:995:32:1144:-84.7745,0,-71.8018	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:62:28,34:28:1008:34:1220:-91.4429,0,-72.3725	1/1:74:0,74:0:0:74:2644:-238.202,-22.2762,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:101:0,101:0:0:101:3620:-326.004,-30.404,0	1/1:137:1,136:1:36:136:4859:-433.863,-37.6428,0	1/1:40:0,40:0:0:40:1415:-127.624,-12.0412,0	1/1:44:0,44:0:0:44:1568:-141.411,-13.2453,0	1/1:103:1,102:1:36:102:3629:-323.216,-27.4078,0	1/1:122:0,122:0:0:122:4345:-391.219,-36.7257,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:89:0,89:0:0:89:3184:-286.784,-26.7917,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:16:7,9:7:243:9:316:-23.9624,0,-17.391	1/1:92:0,92:0:0:92:3242:-291.99,-27.6948,0	0/1:37:20,17:20:711:17:612:-44.2753,0,-53.1775	0/1:100:43,57:43:1544:57:2014:-151.426,0,-109.15	1/1:105:0,105:0:0:105:3759:-338.509,-31.6082,0	1/1:68:0,67:0:0:67:2404:-216.396,-20.169,0	1/1:63:1,62:1:36:62:2206:-195.206,-15.3666,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:45:0,45:0:0:45:1605:-144.738,-13.5464,0	1/1:106:0,106:0:0:106:3787:-341.007,-31.9092,0	1/1:118:0,118:0:0:118:4228:-380.611,-35.5215,0	1/1:65:0,65:0:0:65:2291:-206.449,-19.567,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:87:45,42:45:1616:42:1494:-108.564,0,-119.54	1/1:107:0,107:0:0:107:3791:-341.381,-32.2102,0	0/1:19:6,13:6:203:13:468:-36.7401,0,-12.8816	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:51:0,51:0:0:51:1812:-163.344,-15.3525,0	1/1:31:0,31:0:0:31:1084:-97.8661,-9.33193,0	0/1:67:32,35:32:1140:35:1248:-92.4559,0,-82.7402	0/1:41:29,12:29:1028:12:428:-26.5166,0,-80.4908	1/1:49:0,49:0:0:49:1741:-156.962,-14.7505,0	1/1:57:0,57:0:0:57:2028:-182.793,-17.1587,0
chr06	10909138	.	TATTC	CATTC,CATTA	490475	PASS	AB=0.488575,0.508932;ABP=11.1973,8.01452;AC=144,44;AF=0.765957,0.234043;AN=188;AO=14133,3721;CIGAR=1X4M,1X3M1X;DP=17913;DPB=17913.8;DPRA=0,1.05291;EPP=30640.3,8065.7;EPPR=9.52472;GTI=1;LEN=1,5;MEANALT=2.2766,2.52941;MQM=59.9911,59.9336;MQMR=60;NS=94;NUMALT=2;ODDS=9.31913;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=70,70;PQR=0;PRO=0;QA=503186,129888;QR=106;RO=3;RPL=8233,2053;RPP=839.286,89.5103;RPPR=3.73412;RPR=5900,1668;RUN=1,1;SAF=8239,2055;SAP=847.911,91.317;SAR=5894,1666;SRF=2;SRP=3.73412;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:135:0,55,78:0:0:55,78:1963,2696:-379.136,-219.1,-202.544,-160.081,0,-136.601	1/1:329:0,327,2:0:0:327,2:11663,63:-1049.23,-98.4368,0,-1044.16,-93.0557,-1043.56	1/2:257:0,121,134:0:0:121,134:4317,4682:-732.778,-380.849,-344.424,-351.923,0,-311.585	1/1:360:0,359,1:0:0:359,1:12787,36:-1150.29,-108.07,0,-1147.36,-104.773,-1147.06	1/2:102:0,41,61:0:0:41,61:1460,2114:-291.164,-172.162,-159.82,-119.354,0,-100.991	1/2:82:0,40,42:0:0:40,42:1428,1451:-234.643,-118.218,-106.177,-116.776,0,-104.133	1/1:173:0,171,1:0:0:171,1:6105,36:-549.221,-51.4761,0,-546.283,-48.5088,-545.982	1/2:319:0,155,164:0:0:155,164:5503,5759:-917.447,-469.067,-422.408,-448.733,0,-399.364	1/2:153:0,74,78:0:0:74,78:2623,2763:-438.67,-224.982,-202.705,-213.781,0,-190.3	1/2:281:0,149,132:0:0:149,132:5272,4575:-801.559,-372.146,-327.293,-429.763,0,-390.027	1/2:116:0,58,58:0:0:58,58:2067,2045:-335.345,-166.859,-149.399,-168.841,0,-151.381	1/1:205:0,203,0:0:0:203,0:7221,0:-649.638,-61.1091,0,-649.638,-61.1091,-649.638	1/2:165:0,87,78:0:0:87,78:3093,2733:-474.787,-222.735,-196.545,-252.405,0,-228.925	1/2:166:0,68,98:0:0:68,98:2407,3444:-476.739,-280.677,-260.207,-196.414,0,-166.913	1/1:175:0,174,1:0:0:174,1:6191,30:-556.989,-52.3792,0,-554.59,-49.6807,-554.289	1/2:133:0,70,63:0:0:70,63:2489,2210:-383.036,-180.2,-159.128,-203.188,0,-184.223	1/1:137:0,137,0:0:0:137,0:4875,0:-438.903,-41.2411,0,-438.903,-41.2411,-438.903	1/1:131:0,130,1:0:0:130,1:4611,29:-414.594,-39.1339,0,-412.286,-36.5353,-411.985	1/1:103:0,103,0:0:0:103,0:3684,0:-331.763,-31.0061,0,-331.763,-31.0061,-331.763	1/1:430:0,427,2:0:0:427,2:15166,71:-1364.35,-128.54,0,-1358.56,-122.685,-1357.96	1/2:292:0,143,149:0:0:143,149:5090,5183:-836.555,-421.711,-378.664,-415.136,0,-370.283	1/1:147:0,144,0:0:0:144,0:5123,0:-460.882,-43.3483,0,-460.882,-43.3483,-460.882	1/2:167:0,83,83:0:0:83,83:2929,2873:-471.955,-233.534,-208.548,-238.48,0,-213.495	1/2:191:0,86,105:0:0:86,105:3075,3674:-549.938,-299.203,-273.314,-251.03,0,-219.421	1/2:159:0,78,81:0:0:78,81:2800,2855:-461.161,-232.757,-209.277,-228.759,0,-204.376	1/1:522:1,515,3:1:35:515,3:18323,98:-1645.21,-152.177,0,-1637.59,-147.106,-1639.54	1/1:461:0,458,0:0:0:458,0:16283,0:-1464.79,-137.872,0,-1464.79,-137.872,-1464.79	1/1:109:0,109,0:0:0:109,0:3899,0:-351.103,-32.8123,0,-351.103,-32.8123,-351.103	1/2:334:0,180,154:0:0:180,154:6425,5352:-959.201,-435.4,-381.215,-524.093,0,-477.734	1/2:278:0,144,134:0:0:144,134:5118,4731:-802.68,-385.617,-342.269,-417.417,0,-377.079	1/1:189:0,181,5:0:0:181,5:6456,178:-580.795,-54.4864,0,-566.287,-39.9375,-564.782	1/2:30:0,12,18:0:0:12,18:432,625:-86.4083,-51.1542,-47.5418,-35.6088,0,-30.1903	1/1:35:0,35,0:0:0:35,0:1224,0:-110.461,-10.5361,0,-110.461,-10.5361,-110.461	1/2:18:0,10,8:0:0:10,8:360,283:-52.782,-23.4044,-20.3941,-29.734,0,-27.3258	1/2:12:0,7,5:0:0:7,5:224,165:-31.7087,-13.6688,-11.5616,-18.3656,0,-16.8605	1/1:22:0,21,1:0:0:21,1:756,30:-68.0645,-6.32163,0,-65.6687,-3.62309,-65.3677	1/2:358:0,194,161:0:0:194,161:6914,5689:-1026.96,-463.386,-404.986,-563.646,0,-515.18	1/1:279:0,278,0:0:0:278,0:9909,0:-891.474,-83.6863,0,-891.474,-83.6863,-891.474	1/1:129:1,126,1:1:35:126,1:4506,30:-402.228,-35.0721,0,-400.131,-35.5462,-402.678	1/2:3:0,2,1:0:0:2,1:68,35:-8.70671,-3.1976,-2.59554,-5.85565,0,-5.55462	1/1:357:0,356,1:0:0:356,1:12702,34:-1142.67,-107.167,0,-1139.91,-104.069,-1139.61	1/1:77:0,77,0:0:0:77,0:2764,0:-249.001,-23.1793,0,-249.001,-23.1793,-249.001	1/2:267:0,112,155:0:0:112,155:3987,5415:-765.785,-440.832,-407.117,-325.306,0,-278.647	1/2:179:0,90,88:0:0:90,88:3224,3061:-511.811,-248.874,-221.782,-262.93,0,-236.439	1/2:106:0,54,52:0:0:54,52:1940,1823:-306.962,-148.696,-132.441,-158.621,0,-142.967	1/2:179:0,111,68:0:0:111,68:3949,2403:-517.889,-196.056,-162.641,-322.188,0,-301.718	1/2:235:0,109,125:0:0:109,125:3895,4388:-674.792,-357.215,-324.403,-317.68,0,-280.051	1/1:324:0,321,3:0:0:321,3:11455,98:-1030.5,-96.6306,0,-1022.59,-88.3906,-1021.69	1/1:236:0,233,2:0:0:233,2:8235,58:-740.904,-70.14,0,-736.288,-65.4704,-735.686	1/2:312:0,168,143:0:0:168,143:5978,5032:-896.828,-409.628,-359.055,-487.194,0,-444.147	1/2:261:0,125,136:0:0:125,136:4440,4706:-744.57,-382.776,-345.147,-362.144,0,-321.204	1/2:18:0,10,8:0:0:10,8:360,275:-52.0591,-22.6759,-19.6656,-29.734,0,-27.3258	1/1:252:0,251,0:0:0:251,0:8979,0:-807.81,-75.5585,0,-807.81,-75.5585,-807.81	1/1:84:0,84,0:0:0:84,0:2974,0:-267.893,-25.2865,0,-267.893,-25.2865,-267.893	1/2:29:0,9,20:0:0:9,20:316,701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chr06	10909785	.	TAG	TAA,GAA	163910	PASS	AB=0.490964,0.508434;ABP=5.36491,5.06143;AC=141,47;AF=0.75,0.25;AN=188;AO=6828,1715;CIGAR=2M1X,1X1M1X;DP=8551;DPB=8551;DPRA=14.0621,0.770873;EPP=14829.8,3727.09;EPPR=18.2106;GTI=4;LEN=1,3;MEANALT=1.50549,1.95833;MQM=36.8065,34.9376;MQMR=56.5714;NS=94;NUMALT=2;ODDS=0.344607;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=244728,60563;QR=240;RO=7;RPL=0,0;RPP=14829.8,3727.09;RPPR=10.7656;RPR=6828,1715;RUN=1,1;SAF=0,0;SAP=14829.8,3727.09;SAR=6828,1715;SRF=1;SRP=10.7656;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:13:0,3,10:0:0:3,10:108,358:-34.5745,-26.3273,-25.4242,-8.58219,0,-5.57189	1/1:129:0,129,0:0:0:129,0:4632,0:-391.972,-38.8329,0,-391.972,-38.8329,-391.972	1/2:109:0,49,60:0:0:49,60:1737,2130:-286.899,-155.897,-141.146,-131.329,0,-113.267	1/1:151:0,149,2:0:0:149,2:5348,64:-452.626,-44.8535,0,-447.858,-39.7866,-447.256	1/2:92:0,48,44:0:0:48,44:1728,1566:-245.255,-114.432,-99.9829,-131.151,0,-117.906	1/2:35:0,19,16:0:0:19,16:680,557:-93.1804,-41.0406,-35.321,-52.4662,0,-47.6497	1/1:228:0,228,0:0:0:228,0:8169,0:-690.442,-68.6348,0,-690.442,-68.6348,-690.442	1/2:179:0,74,105:0:0:74,105:2651,3666:-470.627,-268.552,-246.276,-202.404,0,-170.795	1/2:61:0,20,41:0:0:20,41:716,1434:-160.034,-105.328,-99.307,-55.0371,0,-42.6949	1/2:83:0,34,49:0:0:34,49:1216,1736:-220.398,-127.289,-117.054,-93.4401,0,-78.6896	1/2:61:0,34,27:0:0:34,27:1220,964:-163.671,-70.4933,-60.2582,-93.5071,0,-85.3793	1/1:64:0,64,0:0:0:64,0:2296,0:-194.037,-19.2659,0,-194.037,-19.2659,-194.037	1/2:49:0,22,27:0:0:22,27:792,952:-129.488,-69.0256,-62.4029,-60.7906,0,-52.6628	1/2:63:0,40,23:0:0:40,23:1423,815:-167.927,-59.1928,-47.1516,-109.059,0,-102.135	1/1:75:0,75,0:0:0:75,0:2688,0:-227.331,-22.5773,0,-227.331,-22.5773,-227.331	1/2:57:0,31,26:0:0:31,26:1116,920:-152.701,-67.5088,-58.1769,-85.5209,0,-77.6941	1/1:58:0,58,0:0:0:58,0:2075,0:-175.481,-17.4597,0,-175.481,-17.4597,-175.481	1/1:47:0,47,0:0:0:47,0:1688,0:-143.25,-14.1484,0,-143.25,-14.1484,-143.25	1/1:38:0,38,0:0:0:38,0:1368,0:-115.894,-11.4391,0,-115.894,-11.4391,-115.894	1/1:182:0,182,0:0:0:182,0:6528,0:-551.548,-54.7875,0,-551.548,-54.7875,-551.548	1/2:123:0,52,71:0:0:52,71:1872,2486:-324.873,-181.978,-166.324,-143.225,0,-121.852	1/1:98:0,98,0:0:0:98,0:3524,0:-251.947,-29.5009,0,-251.947,-29.5009,-251.947	1/2:94:0,47,47:0:0:47,47:1680,1682:-250.423,-122.638,-108.489,-128.114,0,-113.966	1/2:147:0,73,74:0:0:73,74:2596,2635:-390.732,-192.463,-170.488,-198.597,0,-176.321	1/2:32:0,17,15:0:0:17,15:612,496:-83.0979,-36.7337,-31.6162,-46.683,0,-42.1675	1/1:270:0,270,0:0:0:270,0:9693,0:-693.654,-81.2781,0,-693.654,-81.2781,-693.654	1/1:166:0,166,0:0:0:166,0:5945,0:-503.792,-49.971,0,-503.792,-49.971,-503.792	1/1:40:0,40,0:0:0:40,0:1436,0:-121.306,-12.0412,0,-121.306,-12.0412,-121.306	1/2:247:0,126,121:0:0:126,121:4524,4272:-600.257,-312.614,-274.684,-287.947,0,-251.522	1/2:91:0,41,50:0:0:41,50:1476,1756:-240.939,-128.27,-115.927,-112.999,0,-97.9475	1/1:152:1,151,0:1:34:151,0:5420,0:-454.552,-42.3576,0,-454.853,-45.4555,-457.612	2/2:14:0,0,14:0:0:0,14:0,491:-40.4612,-40.4612,-40.4612,-4.21442,-4.21442,0	1/1:19:0,19,0:0:0:19,0:684,0:-58.4574,-5.71957,0,-58.4574,-5.71957,-58.4574	1/2:3:0,2,1:0:0:2,1:72,36:-8.45018,-2.94513,-2.34307,-5.83438,0,-5.53335	1/2:8:0,3,5:0:0:3,5:108,178:-21.5847,-13.3352,-12.4321,-8.58219,0,-7.07704	1/1:4:0,4,0:0:0:4,0:144,0:-12.5341,-1.20412,0,-12.5341,-1.20412,-12.5341	1/2:163:0,77,86:0:0:77,86:2755,3087:-400.165,-224.893,-201.713,-175.577,0,-149.688	1/1:107:0,107,0:0:0:107,0:3844,0:-325.318,-32.2102,0,-325.318,-32.2102,-325.318	1/1:50:0,50,0:0:0:50,0:1791,0:-152.251,-15.0515,0,-152.251,-15.0515,-152.251	2/2:4:0,0,4:0:0:0,4:0,135:-11.4466,-11.4466,-11.4466,-1.20412,-1.20412,0	1/1:120:0,120,0:0:0:120,0:4296,0:-364.208,-36.1236,0,-364.208,-36.1236,-364.208	1/1:28:0,28,0:0:0:28,0:1008,0:-85.4053,-8.42884,0,-85.4053,-8.42884,-85.4053	1/2:138:0,76,62:0:0:76,62:2732,2216:-370.004,-161.726,-138.848,-208.608,0,-189.944	1/2:93:0,44,49:0:0:44,49:1580,1747:-247.684,-127.757,-114.512,-120.257,0,-105.506	1/2:57:0,27,30:0:0:27,30:968,1073:-151.68,-77.7375,-69.6097,-74.2722,0,-65.2413	1/2:99:0,43,56:0:0:43,56:1540,1982:-243.247,-144.976,-132.032,-98.5728,0,-81.7152	1/2:95:0,43,52:0:0:43,52:1544,1836:-251.276,-133.862,-120.917,-117.743,0,-102.089	1/1:162:0,162,0:0:0:162,0:5809,0:-491.643,-48.7669,0,-491.643,-48.7669,-491.643	1/1:88:0,88,0:0:0:88,0:3141,0:-266.461,-26.4906,0,-266.461,-26.4906,-266.461	1/2:157:0,90,66:0:0:90,66:3221,2340:-416.218,-170.764,-143.671,-245.443,0,-225.575	1/2:174:0,95,79:0:0:95,79:3412,2774:-420.295,-203.133,-174.535,-217.467,0,-193.685	1/2:16:0,5,11:0:0:5,11:180,394:-42.8031,-29.0594,-27.5542,-14.0778,0,-10.7665	1/1:159:0,159,0:0:0:159,0:5724,0:-482.525,-47.8638,0,-482.525,-47.8638,-482.525	1/1:38:0,38,0:0:0:38,0:1353,0:-97.0777,-11.4391,0,-97.0777,-11.4391,-97.0777	1/2:5:0,3,2:0:0:3,2:104,72:-13.5555,-5.56564,-4.66255,-8.31631,0,-7.71425	1/2:151:0,91,60:0:0:91,60:3253,2057:-398.801,-151.074,-123.68,-248.049,0,-229.988	1/1:58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chr06	10909792	.	TTTG	CTTC,CTTG	187292	PASS	AB=0.499699,0.499699;ABP=3.01292,3.01292;AC=141,47;AF=0.75,0.25;AN=188;AO=6956,1684;CIGAR=1X2M1X,1X3M;DP=8646;DPB=8646;DPRA=14.2187,0.758565;EPP=8090.81,3659.77;EPPR=7.35324;GTI=6;LEN=4,1;MEANALT=1.53846,1.95833;MQM=36.8085,34.9365;MQMR=60;NS=94;NUMALT=2;ODDS=1.91635;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=245474,58418;QR=72;RO=2;RPL=933,0;RPP=8090.81,3659.77;RPPR=7.35324;RPR=6023,1684;RUN=1,1;SAF=0,0;SAP=15107.8,3659.77;SAR=6956,1684;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:13:0,3,10:0:0:3,10:108,347:-34.1193,-25.8709,-24.9678,-8.58219,0,-5.57189	1/1:129:0,129,0:0:0:129,0:4575,0:-388.22,-38.8329,0,-388.22,-38.8329,-388.22	1/2:110:0,50,60:0:0:50,60:1741,2091:-286.839,-154.532,-139.48,-132.631,0,-114.569	1/1:152:0,151,1:0:0:151,1:5299,35:-450.392,-45.4555,0,-447.814,-42.5575,-447.513	1/2:92:0,48,43:0:0:48,43:1705,1499:-239.918,-110.299,-95.8494,-129.607,0,-116.663	1/2:35:0,19,16:0:0:19,16:670,548:-92.1762,-40.8636,-35.1441,-51.636,0,-46.8196	1/1:235:0,235,0:0:0:235,0:8235,0:-699.27,-70.7421,0,-699.27,-70.7421,-699.27	1/2:179:0,76,103:0:0:76,103:2684,3574:-469.215,-264.239,-241.36,-205.303,0,-174.297	1/2:61:0,20,41:0:0:20,41:709,1413:-158.663,-104.518,-98.4976,-54.4725,0,-42.1303	1/2:81:0,33,48:0:0:33,48:1161,1671:-212.377,-123.594,-113.66,-89.1093,0,-74.6599	1/2:61:0,34,27:0:0:34,27:1204,929:-160.877,-68.7396,-58.5046,-92.4607,0,-84.3329	1/1:66:0,66,0:0:0:66,0:2346,0:-198.773,-19.868,0,-198.773,-19.868,-198.773	1/2:48:0,22,26:0:0:22,26:789,892:-126.235,-65.9493,-59.3267,-60.6123,0,-52.7855	1/2:65:0,42,23:0:0:42,23:1491,794:-172.62,-58.6219,-45.9786,-114.32,0,-107.397	1/1:76:0,76,0:0:0:76,0:2657,0:-225.688,-22.8783,0,-225.688,-22.8783,-225.688	1/2:59:0,33,26:0:0:33,26:1168,910:-156.697,-67.3506,-57.4166,-89.6729,0,-81.8461	1/1:59:0,59,0:0:0:59,0:2105,0:-177.724,-17.7608,0,-177.724,-17.7608,-177.724	1/1:49:0,49,0:0:0:49,0:1740,0:-148.062,-14.7505,0,-148.062,-14.7505,-148.062	1/1:39:0,39,0:0:0:39,0:1390,0:-118.047,-11.7402,0,-118.047,-11.7402,-118.047	1/1:186:0,186,0:0:0:186,0:6516,0:-552.938,-55.9916,0,-552.938,-55.9916,-552.938	1/2:120:0,52,68:0:0:52,68:1852,2363:-316.062,-174.467,-158.813,-141.923,0,-121.453	1/1:101:0,101,0:0:0:101,0:3579,0:-258.646,-30.404,0,-258.646,-30.404,-258.646	1/2:94:0,47,47:0:0:47,47:1646,1638:-246.253,-120.86,-106.711,-125.717,0,-111.569	1/2:147:0,74,73:0:0:74,73:2615,2545:-387.975,-187.845,-165.569,-200.456,0,-178.481	1/2:30:0,17,13:0:0:17,13:595,450:-78.9271,-33.4946,-28.3771,-45.7554,0,-41.842	1/1:278:0,277,0:0:0:277,0:9744,0:-704.726,-83.3853,0,-704.726,-83.3853,-704.726	1/1:167:0,167,0:0:0:167,0:5926,0:-503.253,-50.272,0,-503.253,-50.272,-503.253	1/1:40:0,40,0:0:0:40,0:1430,0:-121.033,-12.0412,0,-121.033,-12.0412,-121.033	1/2:248:0,129,119:0:0:129,119:4532,4120:-595.95,-304.134,-265.301,-292.118,0,-256.295	1/2:91:0,41,50:0:0:41,50:1456,1744:-240.01,-128.684,-116.342,-111.653,0,-96.602	1/1:152:1,151,0:1:36:151,0:5322,0:-447.772,-42.1583,0,-448.073,-45.4555,-451.011	2/2:14:0,0,14:0:0:0,14:0,487:-40.3984,-40.3984,-40.3984,-4.21442,-4.21442,0	1/1:19:0,19,0:0:0:19,0:653,0:-56.0788,-5.71957,0,-56.0788,-5.71957,-56.0788	1/2:3:0,2,1:0:0:2,1:71,35:-8.34648,-2.89801,-2.29595,-5.77359,0,-5.47256	1/2:7:0,3,4:0:0:3,4:108,140:-18.8838,-10.6323,-9.72923,-8.58219,0,-7.37807	1/1:4:0,4,0:0:0:4,0:143,0:-12.4749,-1.20412,0,-12.4749,-1.20412,-12.4749	1/2:163:0,79,84:0:0:79,84:2812,2926:-395.257,-215.833,-192.052,-179.725,0,-154.439	1/1:108:0,108,0:0:0:108,0:3840,0:-326.135,-32.5112,0,-326.135,-32.5112,-326.135	1/1:50:0,50,0:0:0:50,0:1786,0:-151.971,-15.0515,0,-151.971,-15.0515,-151.971	2/2:4:0,0,4:0:0:0,4:0,134:-11.512,-11.512,-11.512,-1.20412,-1.20412,0	1/1:122:0,122,0:0:0:122,0:4298,0:-365.846,-36.7257,0,-365.846,-36.7257,-365.846	1/1:29:0,29,0:0:0:29,0:1023,0:-86.9796,-8.72987,0,-86.9796,-8.72987,-86.9796	1/2:135:0,77,58:0:0:77,58:2714,2023:-356.576,-149.331,-126.152,-207.57,0,-190.11	1/2:94:0,45,49:0:0:45,49:1598,1694:-246.747,-125.067,-111.52,-122.005,0,-107.255	1/2:58:0,28,30:0:0:28,30:997,1035:-152.509,-76.351,-67.9222,-76.484,0,-67.4531	1/2:99:0,43,56:0:0:43,56:1520,1955:-241.891,-144.355,-131.411,-97.8362,0,-80.9785	1/2:94:0,43,51:0:0:43,51:1522,1769:-246.562,-130.585,-117.641,-116.303,0,-100.95	1/1:163:0,163,0:0:0:163,0:5726,0:-486.256,-49.0679,0,-486.256,-49.0679,-486.256	1/1:89:0,89,0:0:0:89,0:3144,0:-267.681,-26.7917,0,-267.681,-26.7917,-267.681	1/2:156:0,91,65:0:0:91,65:3239,2266:-414.524,-167.353,-139.959,-247.497,0,-227.93	1/2:175:0,97,78:0:0:97,78:3447,2703:-420.172,-199.46,-170.26,-221.016,0,-197.536	1/2:16:0,5,11:0:0:5,11:176,385:-42.1658,-28.6791,-27.1739,-13.8157,0,-10.5044	1/1:161:0,160,0:0:0:160,0:5632,0:-477.371,-48.1648,0,-477.371,-48.1648,-477.371	1/1:38:0,38,0:0:0:38,0:1353,0:-97.3948,-11.4391,0,-97.3948,-11.4391,-97.3948	1/2:5:0,3,2:0:0:3,2:108,70:-13.7309,-5.47611,-4.57302,-8.58219,0,-7.98013	1/2:149:0,91,58:0:0:91,58:3214,1999:-392.969,-147.864,-120.47,-245.427,0,-227.967	1/1:58:0,58,0:0:0:58,0:2030,0: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chr06	10924529	.	G	T	18866.4	PASS	AB=0.497163;ABP=3.17048;AC=45;AF=0.239362;AN=188;AO=1153;CIGAR=1X;DP=6228;DPB=6228;DPRA=0.799228;EPP=2506.72;EPPR=11014.5;GTI=4;LEN=1;MEANALT=1;MQM=59.8742;MQMR=59.9308;NS=94;NUMALT=1;ODDS=1.12746;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41158;QR=181380;RO=5071;RPL=0;RPP=2506.72;RPPR=11014.5;RPR=1153;RUN=1;SAF=1153;SAP=2506.72;SAR=0;SRF=5071;SRP=11014.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:5,7:5:180:7:252:-19.4132,0,-12.9314	0/0:124:124,0:124:4420:0:0:0,-37.3277,-397.971	0/1:85:39,46:39:1392:46:1652:-123.38,0,-99.9906	0/0:143:143,0:143:5104:0:0:0,-43.0473,-459.448	0/1:61:31,30:31:1112:30:1076:-78.79,0,-82.0285	0/1:52:32,20:32:1148:20:716:-49.1142,0,-87.9763	0/0:111:109,2:109:3900:2:72:0,-26.5776,-344.329	0/1:88:51,37:51:1824:37:1328:-93.3316,0,-137.949	0/1:45:17,28:17:608:28:989:-75.7734,0,-41.4606	0/1:50:22,28:22:788:28:996:-74.9034,0,-56.1933	0/1:16:10,6:10:360:6:212:-14.6083,0,-27.9278	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/1:31:12,19:12:424:19:680:-52.1972,0,-29.1645	0/1:37:25,12:25:878:12:428:-27.71,0,-68.1978	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7683	0/1:26:11,15:11:392:15:540:-41.1098,0,-27.7933	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:135:133,0:133:4760:0:0:0,-40.037,-428.191	0/1:110:69,41:69:2456:41:1459:-98.4926,0,-188.182	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.146	0/1:30:18,12:18:644:12:419:-29.0118,0,-49.2597	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:48:24,24:24:864:24:849:-62.278,0,-63.6331	0/0:214:213,0:213:7620:0:0:0,-64.1194,-685.472	0/0:146:146,0:146:5240:0:0:0,-43.9504,-471.105	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:210:101,109:101:3616:109:3892:-287.259,0,-262.406	0/1:101:47,54:47:1684:54:1925:-143.003,0,-121.443	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:1,4:1:36:4:144:-11.8075,0,-2.09312	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:124:58,66:58:2068:66:2359:-175.241,0,-149.063	0/0:148:148,0:148:5285:0:0:0,-44.5524,-475.784	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:124:124,0:124:4433:0:0:0,-37.3277,-399.095	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:89:33,56:33:1188:56:2000:-153.418,0,-80.4369	0/1:31:18,13:18:644:13:468:-33.1277,0,-48.9587	0/1:36:14,22:14:500:22:770:-58.7815,0,-34.4991	0/1:91:46,45:46:1652:45:1607:-117.525,0,-121.575	0/1:128:53,75:53:1896:75:2688:-203.628,0,-132.386	0/0:161:159,2:159:5690:2:72:0,-41.6291,-505.381	0/0:118:118,0:118:4215:0:0:0,-35.5215,-379.531	0/1:80:41,39:41:1472:39:1392:-101.497,0,-108.694	0/1:131:76,55:76:2685:55:1972:-138.319,0,-202.452	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:93:48,45:48:1720:45:1612:-117.374,0,-127.09	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:22:18,4:18:644:4:144:-6.69096,0,-51.667	0/1:55:30,25:30:1068:25:881:-63.0492,0,-79.8754	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.913	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:161:161,0:161:5752:0:0:0,-48.4658,-517.788	0/0:186:186,0:186:6644:0:0:0,-55.9916,-598.04	0/0:63:62,1:62:2224:1:36:0,-15.3666,-196.826	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/0:128:128,0:128:4580:0:0:0,-38.5318,-412.365	0/0:129:127,2:127:4541:2:72:0,-31.9961,-401.645	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.996	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.809	0/1:53:20,33:20:708:33:1188:-91.2731,0,-48.091	0/1:126:79,47:79:2817:47:1665:-112.206,0,-215.838	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/0:69:68,1:68:2444:1:36:0,-17.1728,-216.246	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.881	0/0:59:59,0:59:2112:0:0:0,-17.7608,-189.913	0/0:181:181,0:181:6496:0:0:0,-54.4864,-584.693	0/0:70:69,0:69:2472:0:0:0,-20.7711,-222.442	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/1:53:27,26:27:963:26:924:-67.5217,0,-71.0313	0/0:69:68,1:68:2444:1:36:0,-17.1728,-216.616	0/1:33:18,15:18:648:15:531:-38.1879,0,-48.7179	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.014	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:48:22,26:22:780:26:928:-69.3521,0,-56.0736	0/1:29:12,17:12:432:17:608:-46.3222,0,-30.4913	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.218
chr06	10924578	.	G	T	109017	PASS	AB=0.501103;ABP=3.03425;AC=143;AF=0.760638;AN=188;AO=5024;CIGAR=1X;DP=6170;DPB=6170;DPRA=26.8043;EPP=10765.3;EPPR=2430.99;GTI=4;LEN=1;MEANALT=1.04348;MQM=59.9092;MQMR=59.9457;NS=94;NUMALT=1;ODDS=0.505277;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178861;QR=40729;RO=1142;RPL=5007;RPP=10765.3;RPPR=2430.99;RPR=17;RUN=1;SAF=5024;SAP=10912.5;SAR=0;SRF=1142;SRP=2482.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:212:5:180:-13.2324,0,-16.1135	1/1:120:0,120:0:0:120:4282:-385.558,-36.1236,0	0/1:83:44,39:44:1553:39:1399:-100.445,0,-115.074	1/1:138:0,138:0:0:138:4918:-442.743,-41.5421,0	0/1:58:31,27:31:1103:27:960:-69.2565,0,-82.1201	0/1:53:20,33:20:716:33:1180:-90.5525,0,-48.8131	1/1:111:0,111:0:0:111:3939:-354.691,-33.4143,0	0/1:86:37,49:37:1324:49:1739:-130.882,0,-93.5735	0/1:44:27,17:27:955:17:612:-42.123,0,-73.0186	0/1:48:27,21:27:955:21:740:-52.4739,0,-71.8154	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	0/1:33:21,12:21:756:12:432:-29.2872,0,-58.4323	0/1:36:12,24:12:428:24:852:-66.1633,0,-28.011	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	0/1:25:15,10:15:532:10:351:-24.4009,0,-40.6873	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:27:0,26:0:0:26:932:-83.8391,-7.82678,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:136:0,136:0:0:136:4823:-434.17,-40.9401,0	0/1:106:42,64:42:1504:64:2291:-174.542,0,-103.745	1/1:87:0,86:0:0:86:3059:-275.176,-25.8886,0	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	0/1:17:13,4:13:459:4:144:-8.19611,0,-36.5266	0/1:48:24,24:24:864:24:860:-63.2724,0,-63.6331	1/1:212:0,212:0:0:212:7532:-677.92,-63.8184,0	1/1:144:0,144:0:0:144:5125:-460.763,-43.3483,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	0/1:213:113,100:113:4027:100:3576:-257.928,0,-298.5	0/1:102:55,47:55:1968:47:1676:-120.422,0,-146.67	1/1:90:0,90:0:0:90:3203:-288.449,-27.0927,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87011	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:120:63,57:63:2259:57:2030:-146.848,0,-167.448	1/1:149:0,149:0:0:149:5268:-474.256,-44.8535,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:122:0,122:0:0:122:4339:-390.685,-36.7257,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:88:54,34:54:1936:34:1203:-82.065,0,-148.018	0/1:32:13,19:13:460:19:676:-51.535,0,-32.1024	0/1:36:22,14:22:779:14:504:-34.861,0,-59.5925	0/1:88:45,43:45:1620:43:1539:-112.313,0,-119.599	0/1:127:75,52:75:2679:52:1822:-126.029,0,-203.121	1/1:160:2,158:2:72:158:5639:-500.795,-41.3281,0	1/1:115:0,115:0:0:115:4079:-367.299,-34.6185,0	0/1:80:37,43:37:1320:43:1523:-113.28,0,-95.0195	0/1:128:52,76:52:1846:76:2718:-206.322,0,-127.886	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:88:0,88:0:0:88:3144:-283.183,-26.4906,0	1/1:37:0,37:0:0:37:1306:-117.84,-11.1381,0	0/1:7:3,4:3:104:4:140:-10.8374,0,-7.5956	0/1:95:47,48:47:1666:48:1712:-125.768,0,-121.628	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:21:4,17:4:144:17:608:-48.7295,0,-6.99199	0/1:53:25,28:25:892:28:1008:-75.0818,0,-64.6451	1/1:52:0,51:0:0:51:1819:-163.626,-15.3525,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:159:0,159:0:0:159:5652:-508.803,-47.8638,0	1/1:184:0,184:0:0:184:6534:-588.149,-55.3895,0	1/1:61:1,60:1:36:60:2140:-189.27,-14.7646,0	1/1:83:1,82:1:36:82:2940:-261.236,-21.3872,0	1/1:133:0,133:0:0:133:4739:-426.668,-40.037,0	1/1:126:0,126:0:0:126:4508:-405.515,-37.9298,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:52:0,52:0:0:52:1852:-166.96,-15.6536,0	1/1:45:0,45:0:0:45:1591:-143.477,-13.5464,0	0/1:14:9,5:9:305:5:180:-12.3376,0,-23.5628	1/1:99:1,98:1:36:98:3488:-310.535,-26.2037,0	0/1:51:32,19:32:1144:19:660:-44.3708,0,-87.9161	0/1:128:47,81:47:1680:81:2887:-221.535,0,-112.955	1/1:94:0,94:0:0:94:3348:-301.538,-28.2968,0	1/1:70:0,70:0:0:70:2487:-224.078,-21.0721,0	1/1:68:0,68:0:0:68:2409:-216.875,-20.47,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:74:0,74:0:0:74:2617:-235.777,-22.2762,0	1/1:60:0,59:0:0:59:2090:-187.773,-17.7608,0	1/1:184:0,184:0:0:184:6560:-590.456,-55.3895,0	1/1:69:0,69:0:0:69:2442:-219.636,-20.7711,0	1/1:28:0,28:0:0:28:1002:-90.4957,-8.42884,0	0/1:54:26,28:26:915:28:1004:-74.4202,0,-66.4099	1/1:70:1,69:1:36:69:2447:-216.887,-17.4738,0	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:42:0,42:0:0:42:1499:-135.204,-12.6433,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:48:26,22:26:932:22:772:-55.3518,0,-69.7494	0/1:29:17,12:17:604:12:432:-30.4913,0,-45.9607	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:53:0,53:0:0:53:1892:-170.543,-15.9546,0
chr06	10924667	.	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chr06	10932399	.	T	G	131084	PASS	AB=0.486247;ABP=8.20659;AC=145;AF=0.771277;AN=188;AO=6113;CIGAR=1X;DP=7757;DPB=7757;DPRA=13.8907;EPP=13259.9;EPPR=3540.36;GTI=3;LEN=1;MEANALT=1.06452;MQM=59.9874;MQMR=60;NS=94;NUMALT=1;ODDS=0.470549;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218180;QR=58636;RO=1637;RPL=6113;RPP=13277.2;RPPR=3549.03;RPR=0;RUN=1;SAF=6111;SAP=13259.9;SAR=2;SRF=1636;SRP=3549.03;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:11,11:11:392:11:392:-28.9974,0,-28.9974	1/1:85:0,85:0:0:85:3029:-272.838,-25.5876,0	0/1:182:98,83:98:3520:83:2969:-212.595,0,-262.162	1/1:120:0,120:0:0:120:4289:-386.186,-36.1236,0	0/1:39:15,24:15:540:24:845:-64.6269,0,-37.1964	0/1:55:21,32:21:756:32:1144:-86.9552,0,-52.0528	1/1:142:0,141:0:0:141:5021:-451.678,-42.4452,0	0/1:174:83,91:83:2988:91:3221:-237.732,0,-216.772	0/1:68:31,37:31:1103:37:1319:-98.5411,0,-79.1098	0/1:94:51,43:51:1824:43:1544:-110.956,0,-136.144	0/1:53:21,32:21:740:32:1148:-87.6752,0,-50.9688	1/1:74:0,74:0:0:74:2618:-235.866,-22.2762,0	0/1:81:40,41:40:1428:41:1446:-106.05,0,-104.434	0/1:80:33,47:33:1169:47:1657:-125.333,0,-81.4329	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	0/1:54:28,26:28:999:26:932:-67.9432,0,-73.9689	1/1:84:0,84:0:0:84:2991:-269.42,-25.2865,0	1/1:64:0,64:0:0:64:2280:-205.462,-19.2659,0	1/1:47:0,47:0:0:47:1660:-149.686,-14.1484,0	1/1:63:1,62:1:32:62:2200:-195.064,-15.7656,0	0/1:77:31,46:31:1108:46:1652:-125.789,0,-76.8517	1/1:106:0,106:0:0:106:3803:-342.466,-31.9092,0	0/1:75:26,49:26:936:49:1756:-135.747,0,-61.9822	0/1:117:57,60:57:2048:60:2156:-159.086,0,-149.371	0/1:72:33,39:33:1172:39:1392:-103.905,0,-84.1133	1/1:325:0,325:0:0:325:11625:-1046.12,-97.8348,0	1/1:177:0,177:0:0:177:6320:-568.892,-53.2823,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	0/1:177:105,72:105:3768:72:2547:-176.196,0,-286.036	0/1:162:87,75:87:3103:75:2674:-192.123,0,-230.731	1/1:147:2,145:2:72:145:5175:-459.054,-37.4147,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:239:121,118:121:4344:118:4191:-305.425,0,-319.188	1/1:215:2,212:2:72:212:7607:-677.828,-57.9435,0	1/1:56:0,56:0:0:56:1988:-179.194,-16.8577,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:76:0,76:0:0:76:2706:-243.781,-22.8783,0	1/1:36:0,36:0:0:36:1287:-116.133,-10.8371,0	0/1:100:37,63:37:1324:63:2260:-173.56,0,-89.3591	0/1:71:41,30:41:1472:30:1067:-74.9681,0,-111.403	0/1:73:38,35:38:1364:35:1260:-91.7303,0,-101.086	0/1:98:46,52:46:1644:52:1860:-138.179,0,-118.748	0/1:82:54,28:54:1921:28:1008:-66.3519,0,-148.481	1/1:105:0,105:0:0:105:3752:-337.881,-31.6082,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:94:62,32:62:2228:32:1152:-75.6933,0,-172.487	0/1:158:89,69:89:3192:69:2458:-173.911,0,-239.94	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3376	1/1:106:0,106:0:0:106:3777:-340.126,-31.9092,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:102:64,38:64:2295:38:1360:-91.9955,0,-176.105	1/1:51:0,51:0:0:51:1810:-163.18,-15.3525,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:64:30,34:30:1076:34:1220:-90.8409,0,-77.8869	1/1:138:0,138:0:0:138:4932:-444.029,-41.5421,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:89:1,88:1:36:88:3168:-281.745,-23.1934,0	1/1:156:0,156:0:0:156:5570:-501.421,-46.9607,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:63:0,63:0:0:63:2242:-202.042,-18.9649,0	1/1:170:2,168:2:72:168:5972:-530.124,-44.3384,0	1/1:103:1,102:1:36:102:3642:-324.386,-27.4078,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:95:0,95:0:0:95:3373:-303.784,-28.5979,0	0/1:30:19,11:19:684:11:392:-26.5892,0,-52.8594	1/1:146:0,146:0:0:146:5213:-469.306,-43.9504,0	0/1:27:10,17:10:360:17:612:-47.2856,0,-24.6165	0/1:121:81,40:81:2900:40:1436:-93.1024,0,-224.811	1/1:87:0,87:0:0:87:3101:-279.316,-26.1896,0	1/1:61:0,61:0:0:61:2182:-196.645,-18.3628,0	1/1:70:1,69:1:36:69:2475:-219.405,-17.4738,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:47:0,47:0:0:47:1689:-152.297,-14.1484,0	1/1:60:0,60:0:0:60:2118:-190.886,-18.0618,0	1/1:131:0,131:0:0:131:4704:-423.518,-39.4349,0	1/1:100:0,100:0:0:100:3571:-321.597,-30.103,0	1/1:65:0,65:0:0:65:2314:-208.519,-19.567,0	0/1:103:50,52:50:1791:52:1827:-133.643,0,-130.407	1/1:167:0,166:0:0:166:5925:-532.998,-49.971,0	0/1:36:18,18:18:648:18:648:-47.8148,0,-47.8148	1/1:94:0,94:0:0:94:3346:-301.357,-28.2968,0	1/1:85:0,85:0:0:85:3036:-273.469,-25.5876,0	1/1:46:0,46:0:0:46:1617:-145.817,-13.8474,0	0/1:69:34,35:34:1211:35:1233:-90.501,0,-88.5244	0/1:67:35,32:35:1260:32:1139:-82.6494,0,-93.5365	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	1/1:109:0,109:0:0:109:3896:-350.835,-32.8123,0
chr06	10932567	.	ACAC	GCAC,GCAT	179604	PASS	AB=0.507127,0.487172;ABP=4.55781,8.02425;AC=145,43;AF=0.771277,0.228723;AN=188;AO=6761,1728;CIGAR=1X3M,1X2M1X;DP=8539;DPB=8539.5;DPRA=0,1.00404;EPP=14684.3,3755.31;EPPR=18.2106;GTI=2;LEN=1,4;MEANALT=1.95745,2.43396;MQM=59.9939,59.9248;MQMR=60;NS=94;NUMALT=2;ODDS=0.425627;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=237605,60174;QR=248;RO=7;RPL=6761,1728;RPP=14684.3,3755.31;RPPR=18.2106;RPR=0,0;RUN=1,1;SAF=6761,1728;SAP=14684.3,3755.31;SAR=0,0;SRF=7;SRP=18.2106;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:92:0,48,42:0:0:48,42:1692,1470:-257.381,-119.615,-105.165,-137.781,0,-125.138	1/1:77:0,77,0:0:0:77,0:2706,0:-243.783,-23.1793,0,-243.783,-23.1793,-243.783	1/2:67:0,35,32:0:0:35,32:1239,1138:-194.016,-93.0927,-82.5566,-101.278,0,-91.6446	1/1:224:0,223,0:0:0:223,0:7865,0:-707.525,-67.1297,0,-707.525,-67.1297,-707.525	1/2:70:0,42,28:0:0:42,28:1472,948:-196.981,-77.1953,-64.5521,-120.129,0,-111.7	1/2:35:0,11,24:0:0:11,24:392,828:-99.5643,-67.6082,-64.2969,-32.3087,0,-25.084	1/1:28:0,28,0:0:0:28,0:991,0:-89.5035,-8.42884,0,-89.5035,-8.42884,-89.5035	1/2:182:0,97,85:0:0:97,85:3433,2979:-522.391,-242.758,-213.558,-279.985,0,-254.397	1/2:184:0,95,87:0:0:95,87:3352,3014:-517.93,-244.981,-216.383,-272.977,0,-246.787	1/2:104:0,60,44:0:0:60,44:2131,1537:-299.018,-125.373,-107.311,-173.996,0,-160.751	1/2:28:0,16,11:0:0:16,11:555,379:-76.0001,-30.881,-26.0645,-45.2133,0,-41.902	1/1:90:1,89,0:1:33:89,0:3093,0:-275.291,-23.7936,0,-275.592,-26.7917,-278.26	1/2:82:0,48,34:0:0:48,34:1659,1181:-231.154,-96.3553,-81.9059,-135.145,0,-124.91	1/2:38:0,21,17:0:0:21,17:726,572:-105.676,-46.6796,-40.3579,-59.3369,0,-54.2193	1/1:78:0,78,0:0:0:78,0:2688,0:-242.166,-23.4803,0,-242.166,-23.4803,-242.166	1/2:54:0,36,18:0:0:36,18:1241,635:-152.862,-52.0597,-41.2226,-101.152,0,-95.7337	1/1:33:0,33,0:0:0:33,0:1145,0:-103.355,-9.93399,0,-103.355,-9.93399,-103.355	1/1:28:0,28,0:0:0:28,0:971,0:-87.7011,-8.42884,0,-87.7011,-8.42884,-87.7011	1/1:12:0,12,0:0:0:12,0:420,0:-38.134,-3.61236,0,-38.134,-3.61236,-38.134	1/1:216:0,214,0:0:0:214,0:7605,0:-684.131,-64.4204,0,-684.131,-64.4204,-684.131	1/2:215:0,102,112:0:0:102,112:3592,3896:-609.373,-316.938,-286.233,-292.6,0,-258.885	1/1:131:0,131,0:0:0:131,0:4644,0:-418.125,-39.4349,0,-418.125,-39.4349,-418.125	1/2:116:0,48,68:0:0:48,68:1685,2378:-330.94,-193.806,-179.357,-137.485,0,-117.015	1/2:37:0,24,13:0:0:24,13:832,459:-105.35,-37.7315,-30.5067,-67.9693,0,-64.0559	1/2:181:0,86,95:0:0:86,95:3013,3324:-515.946,-270.784,-244.896,-245.512,0,-216.914	1/1:283:0,282,0:0:0:282,0:9933,0:-893.565,-84.8905,0,-893.565,-84.8905,-893.565	1/1:290:0,286,3:0:0:286,3:10063,108:-905.298,-86.0946,0,-896.486,-77.1625,-895.583	1/1:29:0,28,0:0:0:28,0:948,0:-85.3126,-8.42884,0,-85.3126,-8.42884,-85.3126	1/2:277:0,117,158:0:0:117,158:4162,5553:-790.467,-451.277,-416.056,-339.184,0,-291.621	1/2:75:0,33,42:0:0:33,42:1167,1467:-214.731,-119.68,-109.746,-95.4024,0,-82.7592	1/1:119:0,115,3:0:0:115,3:4042,108:-363.634,-34.6185,0,-354.821,-25.7388,-353.918	1/2:21:0,7,14:0:0:7,14:252,491:-60.8726,-40.3076,-38.2003,-20.9217,0,-16.7073	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:9:0,3,6:0:0:3,6:108,206:-25.8861,-17.0683,-16.1652,-9.17208,0,-7.3659	1/2:5:0,3,2:0:0:3,2:108,67:-14.588,-5.76078,-4.85769,-9.17208,0,-8.57002	1/1:15:0,14,0:0:0:14,0:500,0:-44.9951,-4.21442,0,-44.9951,-4.21442,-44.9951	1/2:173:0,83,90:0:0:83,90:2899,3098:-487.772,-251.959,-226.974,-236.159,0,-209.067	1/1:151:1,150,0:1:36:150,0:5314,0:-474.799,-41.8573,0,-475.1,-45.1545,-478.037	1/1:35:0,35,0:0:0:35,0:1228,0:-110.821,-10.5361,0,-110.821,-10.5361,-110.821	1/1:3:0,3,0:0:0:3,0:99,0:-9.23658,-0.90309,0,-9.23658,-0.90309,-9.23658	1/1:105:0,105,0:0:0:105,0:3727,0:-335.633,-31.6082,0,-335.633,-31.6082,-335.633	1/1:21:0,21,0:0:0:21,0:736,0:-66.5617,-6.32163,0,-66.5617,-6.32163,-66.5617	1/2:230:0,130,99:0:0:130,99:4527,3489:-652.179,-284.063,-244.929,-368.107,0,-338.305	1/2:60:0,32,28:0:0:32,28:1099,960:-167.516,-78.2794,-68.6465,-89.5795,0,-81.1507	1/2:59:0,26,31:0:0:26,31:898,1040:-157.196,-84.233,-76.4063,-72.9682,0,-63.6363	1/2:85:0,49,35:0:0:49,35:1756,1233:-243.705,-100.484,-85.7338,-143.321,0,-132.785	1/2:144:0,73,70:0:0:73,70:2593,2456:-411.154,-199.864,-177.889,-211.283,0,-190.211	1/1:188:0,183,4:0:0:183,4:6443,143:-579.605,-55.0885,0,-567.945,-43.4305,-566.741	1/1:123:1,122,0:1:36:122,0:4305,0:-384.03,-33.4284,0,-384.331,-36.7257,-387.269	1/2:120:0,62,57:0:0:62,57:2194,1961:-337.825,-159.112,-140.448,-178.701,0,-161.543	1/2:58:0,31,23:0:0:31,23:1099,807:-155.234,-65.6966,-56.3647,-89.5593,0,-82.6356	1/2:14:0,10,4:0:0:10,4:360,134:-40.5786,-11.1867,-8.17635,-29.734,0,-28.5299	1/1:85:0,85,0:0:0:85,0:2975,0:-267.981,-25.5876,0,-267.981,-25.5876,-267.981	1/1:51:0,51,0:0:0:51,0:1822,0:-164.261,-15.3525,0,-164.261,-15.3525,-164.261	1/2:11:0,6,5:0:0:6,5:207,172:-31.1289,-14.3125,-12.5063,-17.1607,0,-15.6556	1/2:106:0,62,43:0:0:62,43:2199,1518:-302.806,-123.648,-104.984,-179.191,0,-166.246	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chr06	10940427	.	C	G	49486.2	PASS	AB=0.513347;ABP=10.3142;AC=47;AF=0.25;AN=188;AO=2461;CIGAR=1X;DP=11746;DPB=11746;DPRA=1.0209;EPP=5347;EPPR=20141.2;GTI=7;LEN=1;MEANALT=1.07407;MQM=44.7915;MQMR=49.1034;NS=94;NUMALT=1;ODDS=0.643505;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87212;QR=326944;RO=9278;RPL=1253;RPP=4.79707;RPPR=7.08831;RPR=1208;RUN=1;SAF=1253;SAP=4.79707;SAR=1208;SRF=4574;SRP=6.96567;SRR=4704;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:11,9:11:387:9:324:-19.1734,0,-28.8278	0/0:198:197,0:197:6969:0:0:0,-59.3029,-606.429	0/1:207:93,113:93:3273:113:4010:-271.243,0,-223.189	0/0:326:325,1:325:11532:1:36:0,-95.155,-1004.55	0/1:9:5,4:5:176:4:140:-8.1951,0,-13.0823	0/1:5:2,3:2:68:3:108:-6.84096,0,-4.71226	0/0:125:125,0:125:4403:0:0:0,-37.6287,-379.537	0/1:87:36,51:36:1264:51:1752:-124.616,0,-86.4415	0/1:175:73,102:73:2565:102:3638:-252.725,0,-172.859	0/1:144:88,56:88:3050:56:1974:-120.56,0,-225.338	0/1:89:37,52:37:1317:52:1852:-126.224,0,-88.7346	0/0:183:183,0:183:6334:0:0:0,-55.0885,-554.659	0/1:170:78,92:78:2690:92:3222:-217.267,0,-184.884	0/1:119:57,62:57:1989:62:2203:-146.267,0,-140.895	0/0:133:133,0:133:4671:0:0:0,-40.037,-410.919	0/1:99:56,43:56:1996:43:1506:-94.6741,0,-146.604	0/0:83:83,0:83:2882:0:0:0,-24.9855,-252.676	0/0:69:69,0:69:2423:0:0:0,-20.7711,-215.105	0/0:62:62,0:62:2186:0:0:0,-18.6639,-189.942	0/0:218:216,2:216:7651:2:72:0,-59.9611,-663.764	0/1:360:169,191:169:5892:191:6764:-456.22,0,-406.54	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.1888	0/1:155:75,80:75:2636:80:2844:-189.799,0,-183.839	0/1:81:48,33:48:1698:33:1184:-72.1098,0,-123.329	0/1:22:8,14:8:269:14:504:-36.7998,0,-17.5947	0/0:288:288,0:288:10195:0:0:0,-86.6966,-893.622	0/0:199:199,0:199:7050:0:0:0,-59.905,-615.532	0/0:71:71,0:71:2469:0:0:0,-21.3731,-216.1	0/1:347:187,160:187:6649:160:5699:-362.634,0,-478.435	0/1:129:58,71:58:2056:71:2523:-165.972,0,-142.2	0/0:221:219,2:219:7787:2:68:0,-60.992,-673.847	1/1:12:1,11:1:36:11:373:-26.421,-0.188758,0	0/0:15:15,0:15:514:0:0:0,-4.51545,-45.5626	0/1:6:4,2:4:144:2:72:-3.85725,0,-11.1843	1/1:12:1,11:1:32:11:396:-30.5315,-0.413047,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-17.9507	0/1:292:153,139:153:5391:139:4896:-318.764,0,-385.662	0/0:42:42,0:42:1482:0:0:0,-12.6433,-129.906	0/0:89:89,0:89:3123:0:0:0,-26.7917,-271.463	0/1:9:8,1:8:271:1:36:-0.271482,0,-21.146	0/0:182:182,0:182:6460:0:0:0,-54.7875,-555.86	0/0:42:42,0:42:1481:0:0:0,-12.6433,-130.036	0/1:49:15,34:15:536:34:1193:-84.1536,0,-31.9316	0/1:129:69,60:69:2433:60:2140:-140.173,0,-172.495	0/1:132:48,84:48:1688:84:2976:-204.059,0,-108.324	0/1:50:32,18:32:1136:18:639:-38.6959,0,-85.5337	0/1:76:30,45:30:1049:45:1616:-113.092,0,-69.5097	0/0:205:205,0:205:7276:0:0:0,-61.7111,-638.609	0/0:135:135,0:135:4772:0:0:0,-40.639,-417.85	0/1:192:92,100:92:3266:100:3546:-231.291,0,-227.282	0/1:159:73,86:73:2568:86:3058:-210.234,0,-179.416	0/1:5:4,1:4:144:1:36:-1.4756,0,-11.4853	0/0:87:85,2:85:3000:2:72:0,-19.4272,-252.527	0/0:78:78,0:78:2745:0:0:0,-23.4803,-240.295	0/1:7:4,3:4:144:3:108:-6.81431,0,-10.6129	0/1:269:120,149:120:4241:149:5293:-356.208,0,-291.594	0/0:29:29,0:29:1023:0:0:0,-8.72987,-90.877	0/1:4:2,2:2:72:2:72:-4.45931,0,-5.6326	0/1:13:4,9:4:144:9:324:-25.0298,0,-9.23865	0/1:129:65,64:65:2327:64:2268:-144.345,0,-166.919	0/0:129:127,2:127:4471:2:72:0,-33.1694,-388.26	1/1:2:0,2:0:0:2:72:-5.91557,-0.60206,0	0/0:229:228,0:228:8006:0:0:0,-68.6348,-701.111	0/0:235:234,1:234:8273:1:27:0,-68.0423,-722.661	0/0:79:79,0:79:2769:0:0:0,-23.7814,-243.094	0/0:65:65,0:65:2306:0:0:0,-19.5669,-202.526	0/0:238:238,0:238:8422:0:0:0,-71.6451,-734.307	0/0:233:233,0:233:8266:0:0:0,-70.14,-722.198	0/0:79:79,0:79:2706:0:0:0,-23.7814,-239.15	0/0:69:69,0:69:2431:0:0:0,-20.7711,-208.633	0/0:61:61,0:61:2144:0:0:0,-18.3628,-188.685	0/1:41:20,21:20:704:21:715:-48.402,0,-49.6925	0/0:78:78,0:78:2720:0:0:0,-23.4803,-238.497	0/1:153:74,79:74:2596:79:2819:-187.373,0,-183.326	0/1:328:165,163:165:5839:163:5811:-373.359,0,-415.149	0/0:298:297,1:297:10524:1:36:0,-86.7262,-915.31	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.9093	0/0:206:204,1:204:7190:1:36:0,-58.3987,-619.063	0/1:24:8,16:8:279:16:561:-42.4618,0,-17.7446	0/0:156:156,0:156:5543:0:0:0,-46.9607,-477.611	0/0:75:75,0:75:2659:0:0:0,-22.5772,-230.947	0/0:395:395,0:395:13864:0:0:0,-118.907,-1212.74	0/0:114:113,0:113:3953:0:0:0,-34.0164,-348.403	0/0:133:133,0:133:4673:0:0:0,-40.037,-412.514	0/1:110:70,40:70:2420:40:1395:-82.9331,0,-180.041	0/0:215:214,1:214:7466:1:36:0,-61.7407,-653.066	0/1:40:23,17:23:811:17:612:-40.0021,0,-59.8233	0/0:126:124,1:124:4327:1:36:0,-34.957,-375.645	0/0:133:133,0:133:4658:0:0:0,-40.037,-407.01	0/0:61:61,0:61:2104:0:0:0,-18.3628,-184.933	0/1:156:85,71:85:3025:71:2516:-162.868,0,-219.229	0/1:129:46,83:46:1635:83:2931:-205.51,0,-104.752	0/0:288:288,0:288:10146:0:0:0,-86.6966,-880.541	0/0:203:203,0:203:7201:0:0:0,-61.1091,-631.285
chr06	10940450	.	G	A	95448.9	PASS	AB=0.477133;ABP=13.3386;AC=141;AF=0.75;AN=188;AO=4823;CIGAR=1X;DP=6033;DPB=6033;DPRA=24.8283;EPP=10467.3;EPPR=2628.32;GTI=7;LEN=1;MEANALT=1.01099;MQM=38.5225;MQMR=31.0951;NS=94;NUMALT=1;ODDS=0.275702;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172611;QR=43191;RO=1209;RPL=4823;RPP=10476;RPPR=2628.32;RPR=0;RUN=1;SAF=1;SAP=10467.3;SAR=4822;SRF=0;SRP=2628.32;SRR=1209;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:7,2:7:252:2:72:-3.79557,0,-16.0639	1/1:129:0,129:0:0:129:4609:-393.734,-38.8329,0	0/1:105:53,52:53:1892:52:1852:-126.607,0,-110.692	1/1:174:2,172:2:72:172:6161:-517.835,-46.1327,0	0/1:7:4,3:4:144:3:108:-7.47887,0,-8.92157	0/1:5:3,2:3:108:2:72:-4.99969,0,-6.84096	1/1:93:0,93:0:0:93:3311:-281.586,-27.9958,0	0/1:26:16,10:16:572:10:360:-23.4836,0,-35.2722	0/1:72:40,32:40:1415:32:1134:-74.3035,0,-85.0747	0/1:65:27,38:27:960:38:1356:-96.2626,0,-52.7987	0/1:42:26,16:26:919:16:572:-35.941,0,-56.8197	1/1:97:0,97:0:0:97:3477:-294.478,-29.1999,0	0/1:81:43,38:43:1544:38:1360:-91.4897,0,-91.7273	0/1:47:29,18:29:1044:18:648:-41.6843,0,-63.1395	1/1:51:0,51:0:0:51:1828:-154.739,-15.3525,0	0/1:47:24,23:24:860:23:815:-56.1242,0,-50.4123	1/1:35:0,35:0:0:35:1252:-105.55,-10.5361,0	1/1:23:0,23:0:0:23:823:-70.3584,-6.92369,0	1/1:33:0,33:0:0:33:1180:-99.4559,-9.93399,0	1/1:130:2,128:2:72:128:4579:-385.928,-33.4705,0	0/1:172:86,86:86:3053:86:3071:-207.295,0,-178.085	1/1:5:0,5:0:0:5:180:-15.7486,-1.50515,0	0/1:75:37,38:37:1332:38:1360:-92.7447,0,-77.2194	0/1:50:19,31:19:680:31:1112:-79.7828,0,-36.3359	0/1:6:4,2:4:144:2:72:-4.69866,0,-9.2226	1/1:145:0,145:0:0:145:5199:-441.926,-43.6494,0	1/1:96:0,96:0:0:96:3439:-291.014,-28.8989,0	1/1:31:0,30:0:0:30:1076:-90.3488,-9.0309,0	0/1:180:84,96:84:3012:96:3444:-240.144,0,-171.453	0/1:74:43,31:43:1527:31:1106:-72.5972,0,-92.6284	1/1:127:2,125:2:72:125:4484:-374.911,-32.5674,0	0/1:10:9,1:9:315:1:36:-0.413302,0,-21.0437	1/1:7:0,7:0:0:7:252:-21.911,-2.10721,0	0/1:4:2,2:2:72:2:72:-5.30072,0,-4.45931	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.0288	1/1:6:0,6:0:0:6:216:-18.8581,-1.80618,0	0/1:144:68,76:68:2431:76:2736:-190.637,0,-138.38	1/1:25:0,25:0:0:25:896:-77.0999,-7.52575,0	1/1:43:0,43:0:0:43:1548:-128.681,-12.9443,0	0/1:8:1,7:1:36:7:248:-19.24,0,-0.572512	1/1:127:0,127:0:0:127:4536:-380.875,-38.2308,0	1/1:18:0,18:0:0:18:648:-55.0931,-5.41854,0	0/1:22:15,7:15:536:7:252:-14.4976,0,-33.2431	0/1:69:26,43:26:932:43:1539:-109.731,0,-49.3949	0/1:70:47,23:47:1684:23:824:-49.083,0,-104.925	0/1:22:9,13:9:311:13:464:-33.5012,0,-17.8261	0/1:27:16,11:16:576:11:396:-25.3219,0,-35.0931	1/1:104:0,104:0:0:104:3732:-318.558,-31.3071,0	1/1:64:0,64:0:0:64:2294:-194.357,-19.2659,0	0/1:107:56,51:56:1997:51:1824:-122.897,0,-117.365	0/1:58:34,24:34:1203:24:847:-55.607,0,-73.4605	0/1:3:1,2:1:36:2:72:-5.60175,0,-2.07766	1/1:56:0,56:0:0:56:2002:-168.882,-16.8577,0	1/1:45:0,45:0:0:45:1580:-134.992,-13.5464,0	0/1:6:2,4:2:72:4:144:-10.914,0,-3.85725	0/1:130:75,55:75:2684:55:1972:-129.206,0,-162.138	1/1:6:0,6:0:0:6:216:-18.8298,-1.80618,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.66343	0/1:2:1,1:1:36:1:36:-2.82154,0,-2.37869	0/1:66:40,26:40:1436:26:932:-60.3132,0,-87.6158	1/1:55:3,52:3:108:52:1853:-149.107,-7.63765,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.91557	1/1:119:0,119:0:0:119:4259:-363.978,-35.8226,0	1/1:115:0,115:0:0:115:4110:-350.516,-34.6185,0	1/1:44:0,44:0:0:44:1572:-135.028,-13.2453,0	1/1:39:0,39:0:0:39:1391:-118.78,-11.7402,0	1/1:148:0,148:0:0:148:5300:-453.034,-44.5524,0	1/1:130:0,130:0:0:130:4671:-397.872,-39.1339,0	1/1:28:0,28:0:0:28:1004:-85.5901,-8.42884,0	1/1:44:0,44:0:0:44:1567:-130.268,-13.2453,0	1/1:31:0,31:0:0:31:1116:-95.8608,-9.33193,0	0/1:14:7,7:7:252:7:248:-16.7458,0,-14.8624	1/1:37:0,37:0:0:37:1320:-112.65,-11.1381,0	0/1:71:38,33:38:1356:33:1179:-80.0007,0,-80.5024	0/1:178:97,81:97:3468:81:2899:-194.339,0,-206.207	1/1:165:1,164:1:36:164:5884:-496.425,-46.6892,0	1/1:4:0,4:0:0:4:144:-12.6673,-1.20412,0	1/1:133:0,133:0:0:133:4740:-401.139,-40.037,0	0/1:5:2,3:2:72:3:108:-8.08093,0,-4.15828	1/1:115:0,115:0:0:115:4115:-347.305,-34.6185,0	1/1:62:0,62:0:0:62:2224:-190.834,-18.6639,0	1/1:187:0,187:0:0:187:6698:-566.314,-56.2926,0	1/1:48:0,48:0:0:48:1720:-147.724,-14.4494,0	1/1:53:0,53:0:0:53:1906:-162.096,-15.9546,0	0/1:52:21,31:21:756:31:1116:-80.2352,0,-41.11	1/1:97:1,96:1:32:96:3427:-289.932,-26.3537,0	0/1:16:6,10:6:216:10:360:-26.3383,0,-11.5777	1/1:60:1,59:1:36:59:2105:-175.736,-15.081,0	1/1:68:0,68:0:0:68:2432:-206.499,-20.47,0	1/1:30:0,30:0:0:30:1080:-91.3244,-9.0309,0	0/1:63:33,30:33:1180:30:1076:-71.8115,0,-70.1646	0/1:64:38,26:38:1360:26:930:-60.313,0,-82.9253	1/1:180:0,180:0:0:180:6450:-546.461,-54.1854,0	1/1:89:0,89:0:0:89:3181:-268.963,-26.7917,0
chr06	10940457	.	G	A	94879.1	PASS	AB=0.477394;ABP=13.0245;AC=141;AF=0.75;AN=188;AO=4792;CIGAR=1X;DP=5991;DPB=5991;DPRA=24.6552;EPP=10400;EPPR=2602.26;GTI=7;LEN=1;MEANALT=1.02198;MQM=38.5319;MQMR=31.0568;NS=94;NUMALT=1;ODDS=0.309258;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171490;QR=42674;RO=1197;RPL=4792;RPP=10408.7;RPPR=2602.26;RPR=0;RUN=1;SAF=1;SAP=10400;SAR=4791;SRF=0;SRP=2602.26;SRR=1197;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:7,2:7:252:2:72:-3.79557,0,-16.0639	1/1:126:0,125:0:0:125:4488:-382.878,-37.6288,0	0/1:100:51,49:51:1827:49:1764:-119.493,0,-106.933	1/1:174:1,173:1:36:173:6192:-523.513,-49.3985,0	0/1:7:4,3:4:144:3:108:-7.47887,0,-8.92157	0/1:5:3,2:3:108:2:57:-3.73583,0,-6.84096	1/1:93:0,93:0:0:93:3328:-283.072,-27.9958,0	0/1:24:14,10:14:487:10:360:-24.0856,0,-30.0003	0/1:71:40,31:40:1428:31:1108:-73.2624,0,-85.8641	0/1:65:27,38:27:964:38:1368:-97.0819,0,-52.9203	0/1:41:25,16:25:879:16:568:-35.9678,0,-54.3164	1/1:97:0,97:0:0:97:3470:-293.941,-29.1999,0	0/1:84:43,41:43:1531:41:1472:-100.104,0,-90.3184	0/1:46:29,17:29:1040:17:608:-38.63,0,-63.319	1/1:53:0,53:0:0:53:1908:-161.447,-15.9546,0	0/1:48:24,24:24:856:24:864:-59.8706,0,-49.9897	1/1:34:0,34:0:0:34:1212:-102.196,-10.235,0	1/1:23:0,23:0:0:23:819:-69.7504,-6.92369,0	1/1:33:0,33:0:0:33:1184:-99.4921,-9.93399,0	1/1:128:2,126:2:72:126:4520:-380.714,-32.8684,0	0/1:173:86,87:86:3064:87:3109:-210.742,0,-178.572	1/1:4:0,4:0:0:4:144:-12.6673,-1.20412,0	0/1:75:36,39:36:1292:39:1404:-96.3723,0,-74.4154	0/1:50:19,31:19:680:31:1116:-80.056,0,-36.3359	0/1:6:4,2:4:144:2:72:-4.69866,0,-9.2226	1/1:147:0,147:0:0:147:5242:-445.965,-44.2514,0	1/1:98:0,98:0:0:98:3488:-294.813,-29.5009,0	1/1:31:0,31:0:0:31:1112:-93.7724,-9.33193,0	0/1:182:87,95:87:3124:95:3408:-236.433,0,-179.21	0/1:75:44,31:44:1576:31:1106:-72.2962,0,-95.5159	1/1:124:2,122:2:72:122:4380:-365.868,-31.6643,0	0/1:10:9,1:9:324:1:36:-0.413302,0,-21.4319	1/1:6:0,6:0:0:6:216:-18.8298,-1.80618,0	0/1:4:2,2:2:72:2:72:-5.30072,0,-4.45931	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.0288	1/1:6:0,6:0:0:6:208:-17.8759,-1.80618,0	0/1:141:66,75:66:2350:75:2696:-187.677,0,-133.486	1/1:25:0,25:0:0:25:900:-77.3734,-7.52575,0	1/1:43:0,43:0:0:43:1548:-128.681,-12.9443,0	0/1:8:1,7:1:36:7:252:-19.5311,0,-0.572512	1/1:123:0,123:0:0:123:4400:-369.581,-37.0267,0	1/1:18:0,18:0:0:18:644:-54.7816,-5.41854,0	0/1:22:15,7:15:528:7:252:-14.4976,0,-32.9992	0/1:68:25,43:25:900:43:1525:-109.686,0,-47.1349	0/1:70:47,23:47:1692:23:828:-49.3566,0,-105.168	0/1:21:9,12:9:320:12:428:-30.7208,0,-18.5153	0/1:28:17,11:17:604:11:392:-24.7458,0,-37.2311	1/1:104:0,104:0:0:104:3713:-317.866,-31.3071,0	1/1:63:0,63:0:0:63:2258:-191.346,-18.9649,0	0/1:107:57,50:57:2040:50:1792:-120.868,0,-120.637	0/1:57:34,23:34:1204:23:824:-53.7786,0,-73.9828	0/1:3:1,2:1:36:2:72:-5.60175,0,-2.07766	1/1:53:0,53:0:0:53:1896:-159.774,-15.9546,0	1/1:43:0,43:0:0:43:1540:-131.537,-12.9443,0	0/1:6:2,4:2:72:4:144:-10.914,0,-3.85725	0/1:130:76,54:76:2700:54:1940:-126.237,0,-164.215	1/1:7:0,7:0:0:7:252:-21.5062,-2.10721,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.66343	0/1:2:1,1:1:36:1:36:-2.82154,0,-2.37869	0/1:64:38,26:38:1348:26:918:-59.8327,0,-82.3668	1/1:53:2,51:2:72:51:1824:-149.444,-10.2912,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-5.70419	1/1:118:0,118:0:0:118:4232:-361.572,-35.5215,0	1/1:119:0,119:0:0:119:4249:-362.012,-35.8226,0	1/1:43:0,43:0:0:43:1530:-131.412,-12.9443,0	1/1:39:0,39:0:0:39:1400:-119.68,-11.7402,0	1/1:146:0,146:0:0:146:5248:-447.275,-43.9504,0	1/1:131:0,131:0:0:131:4671:-398.206,-39.4349,0	1/1:27:0,27:0:0:27:972:-82.7822,-8.12781,0	1/1:46:0,46:0:0:46:1643:-136.804,-13.8474,0	1/1:32:0,32:0:0:32:1139:-97.9914,-9.63296,0	0/1:14:7,7:7:252:7:244:-16.4692,0,-14.8624	1/1:38:0,38:0:0:38:1349:-114.859,-11.4391,0	0/1:71:38,33:38:1352:33:1179:-80.0007,0,-80.381	0/1:172:92,80:92:3262:80:2872:-193.74,0,-193.689	1/1:167:1,166:1:36:166:5939:-501.738,-47.2913,0	1/1:4:0,4:0:0:4:144:-12.6673,-1.20412,0	1/1:131:0,130:0:0:130:4636:-391.645,-39.1339,0	0/1:5:2,3:2:72:3:108:-8.08093,0,-4.15828	1/1:115:0,115:0:0:115:4111:-348.502,-34.6185,0	1/1:61:0,61:0:0:61:2188:-187.752,-18.3628,0	1/1:184:0,184:0:0:184:6583:-556.34,-55.3895,0	1/1:48:0,48:0:0:48:1720:-147.724,-14.4494,0	1/1:51:0,51:0:0:51:1822:-155.894,-15.3525,0	0/1:50:20,30:20:716:30:1080:-77.756,0,-38.9077	1/1:96:1,95:1:36:95:3396:-287.394,-25.9181,0	0/1:16:6,10:6:216:10:360:-26.3383,0,-11.5777	1/1:60:1,59:1:36:59:2120:-176.29,-15.081,0	1/1:68:0,68:0:0:68:2424:-206.583,-20.47,0	1/1:29:0,29:0:0:29:1035:-88.3038,-8.72987,0	0/1:62:33,29:33:1184:29:1044:-70.2531,0,-70.5871	0/1:64:38,26:38:1318:26:927:-59.729,0,-81.4278	1/1:175:0,175:0:0:175:6256:-529.1,-52.6803,0	1/1:90:0,90:0:0:90:3212:-271.478,-27.0927,0
chr06	10940469	.	CCTA	CCTG,TCTG	116005	PASS	AB=0.478492,0.521064;ABP=12.0708,11.701;AC=141,47;AF=0.75,0.25;AN=188;AO=4798,1192;CIGAR=3M1X,1X2M1X;DP=5993;DPB=5994.25;DPRA=28.1915,0.881409;EPP=10413.1,2591.41;EPPR=0;GTI=6;LEN=1,4;MEANALT=1.56044,1.96078;MQM=38.5258,31.0101;MQMR=0;NS=94;NUMALT=2;ODDS=0.423422;PAIRED=0,0;PAIREDR=0;PAO=0.5,4;PQA=0,136;PQR=0;PRO=0.5;QA=171949,41902;QR=0;RO=0;RPL=4798,1192;RPP=10421.7,2591.41;RPPR=0;RPR=0,0;RUN=1,1;SAF=1,0;SAP=10413.1,2591.41;SAR=4797,1192;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:9:0,2,7:0:0:2,7:72,246:-22.0236,-16.4516,-15.8495,-5.90278,0,-3.79557	1/1:130:0,130,0:0:0:130,0:4672,0:-398.9,-39.1339,0,-398.9,-39.1339,-398.9	1/2:105:0,53,52:0:0:53,52:1900,1828:-267.193,-122.868,-106.914,-144.641,0,-128.987	1/1:174:0,173,1:0:0:173,1:6181,32:-525.018,-52.0782,0,-522.758,-49.533,-522.457	1/2:7:0,3,4:0:0:3,4:108,136:-17.9383,-9.57583,-8.67274,-8.68299,0,-7.47887	1/2:5:0,2,3:0:0:2,3:72,108:-13.0212,-7.44302,-6.84096,-5.90278,0,-4.99969	1/1:95:0,95,0:0:0:95,0:3396,0:-288.74,-28.5979,0,-288.74,-28.5979,-288.74	1/2:27:0,11,16:0:0:11,16:388,544:-67.4343,-37.3084,-33.997,-30.4444,0,-25.6279	1/2:70:0,30,40:0:0:30,40:1068,1391:-175.493,-93.8767,-84.8458,-81.9343,0,-69.8931	1/2:64:0,36,27:0:0:36,27:1292,943:-162.392,-63.3293,-52.4923,-99.0996,0,-90.9718	1/2:39:0,15,24:0:0:15,24:536,848:-97.2821,-56.615,-52.0995,-40.6899,0,-33.4652	1/1:95:0,95,0:0:0:95,0:3392,0:-288.839,-28.5979,0,-288.839,-28.5979,-288.839	1/2:83:0,41,42:0:0:41,42:1460,1490:-212.312,-100.232,-87.8895,-112.398,0,-99.7549	1/2:46:0,17,29:0:0:17,29:612,1036:-115.58,-68.2988,-63.1813,-47.606,0,-38.8761	1/1:52:0,52,0:0:0:52,0:1864,0:-157.82,-15.6536,0,-157.82,-15.6536,-157.82	1/2:48:0,24,24:0:0:24,24:860,863:-123.936,-57.4339,-50.2092,-66.8218,0,-59.5971	1/1:33:0,33,0:0:0:33,0:1184,0:-99.5751,-9.93399,0,-99.5751,-9.93399,-99.5751	1/1:22:0,22,0:0:0:22,0:780,0:-66.7495,-6.62266,0,-66.7495,-6.62266,-66.7495	1/1:32:0,32,0:0:0:32,0:1140,0:-95.8069,-9.63296,0,-95.8069,-9.63296,-95.8069	1/1:128:0,126,2:0:0:126,2:4528,71:-386.192,-37.9298,0,-381.453,-32.8933,-380.851	1/2:170:0,86,84:0:0:86,84:3076,2977:-432.378,-198.963,-173.074,-233.73,0,-208.444	1/1:5:0,5,0:0:0:5,0:180,0:-15.7486,-1.50515,0,-15.7486,-1.50515,-15.7486	1/2:76:0,40,36:0:0:40,36:1432,1277:-194.568,-85.44,-73.3988,-109.444,0,-98.6065	1/2:50:0,31,19:0:0:31,19:1116,671:-130.843,-45.3802,-36.0483,-85.7756,0,-80.056	1/2:6:0,2,4:0:0:2,4:72,144:-15.3998,-9.82466,-9.2226,-5.90278,0,-4.69866	1/1:148:0,148,0:0:0:148,0:5293,0:-449.187,-44.5524,0,-449.187,-44.5524,-449.187	1/1:95:0,95,0:0:0:95,0:3408,0:-287.886,-28.5979,0,-287.886,-28.5979,-287.886	1/1:31:0,31,0:0:0:31,0:1112,0:-93.7724,-9.33193,0,-93.7724,-9.33193,-93.7724	1/2:182:0,96,86:0:0:96,86:3440,3008:-466.756,-201.829,-172.93,-264.948,0,-239.059	1/2:74:0,30,44:0:0:30,44:1076,1549:-186.325,-103.924,-94.8932,-82.722,0,-69.4767	1/1:120:0,118,2:0:0:118,2:4244,72:-359.362,-35.5215,0,-354.6,-30.4602,-353.998	1/2:10:0,1,9:0:0:1,9:36,324:-24.5175,-21.7329,-21.4319,-3.12257,0,-0.413302	1/1:7:0,7,0:0:0:7,0:240,0:-21.0812,-2.10721,0,-21.0812,-2.10721,-21.0812	1/2:4:0,2,2:0:0:2,2:72,72:-10.6439,-5.06137,-4.45931,-5.90278,0,-5.30072	2/2:4:0,0,4:0:0:0,4:0,140:-10.9044,-10.9044,-10.9044,-1.20412,-1.20412,0	1/1:6:0,6,0:0:0:6,0:212,0:-18.5808,-1.80618,0,-18.5808,-1.80618,-18.5808	1/2:141:0,74,67:0:0:74,67:2652,2355:-362.139,-157.528,-135.251,-204.927,0,-184.758	1/1:25:0,25,0:0:0:25,0:900,0:-77.3734,-7.52575,0,-77.3734,-7.52575,-77.3734	1/1:42:0,42,0:0:0:42,0:1500,0:-124.781,-12.6433,0,-124.781,-12.6433,-124.781	1/2:8:0,7,1:0:0:7,1:252,36:-22.2081,-2.67972,-0.572512,-19.8321,0,-19.5311	1/1:126:0,126,0:0:0:126,0:4508,0:-379.27,-37.9298,0,-379.27,-37.9298,-379.27	1/1:17:0,17,0:0:0:17,0:612,0:-51.94,-5.11751,0,-51.94,-5.11751,-51.94	1/2:22:0,7,15:0:0:7,15:252,526:-53.8676,-35.1724,-33.0652,-19.0131,0,-14.4976	1/2:67:0,42,25:0:0:42,25:1508,875:-174.046,-59.0065,-46.3633,-115.35,0,-107.824	1/2:68:0,22,46:0:0:22,46:792,1605:-168.286,-107.885,-101.263,-60.7247,0,-46.8773	1/2:22:0,13,9:0:0:13,9:468,309:-57.6196,-21.4486,-17.5353,-36.4851,0,-33.7758	1/2:28:0,11,17:0:0:11,17:392,587:-69.543,-39.9962,-36.6848,-29.8634,0,-24.7458	1/1:100:0,100,0:0:0:100,0:3588,0:-306.312,-30.103,0,-306.312,-30.103,-306.312	1/1:64:0,64,0:0:0:64,0:2300,0:-194.65,-19.2659,0,-194.65,-19.2659,-194.65	1/2:107:0,50,57:0:0:50,57:1788,2018:-271.656,-135,-119.949,-136.974,0,-119.815	1/2:57:0,24,33:0:0:24,33:860,1146:-143.828,-77.3546,-70.1299,-66.7939,0,-56.8599	1/2:3:0,2,1:0:0:2,1:72,35:-8.24522,-2.65353,-2.05147,-5.90278,0,-5.60175	1/1:54:0,54,0:0:0:54,0:1936,0:-162.741,-16.2556,0,-162.741,-16.2556,-162.741	1/1:44:0,44,0:0:0:44,0:1568,0:-134.058,-13.2453,0,-134.058,-13.2453,-134.058	1/2:6:0,4,2:0:0:4,2:144,72:-16.2641,-5.06137,-3.85725,-11.516,0,-10.914	1/2:130:0,57,73:0:0:57,73:2044,2521:-327.398,-170.558,-153.399,-157.159,0,-135.184	1/1:6:0,6,0:0:0:6,0:216,0:-18.4239,-1.80618,0,-18.4239,-1.80618,-18.4239	2/2:2:0,0,2:0:0:0,2:0,72:-5.66343,-5.66343,-5.66343,-0.6020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chr06	10956661	.	C	A	105531	PASS	AB=0.491638;ABP=4.75353;AC=142;AF=0.771739;AN=184;AO=5659;CIGAR=1X;DP=7131;DPB=7131;DPRA=0;EPP=12265.3;EPPR=3182.05;GTI=2;LEN=1;MEANALT=1.04348;MQM=35.6747;MQMR=39.6383;NS=92;NUMALT=1;ODDS=1.23752;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201992;QR=52493;RO=1468;RPL=2;RPP=12274;RPPR=3182.05;RPR=5657;RUN=1;SAF=5658;SAP=12282.7;SAR=1;SRF=1468;SRP=3190.73;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:18,8:18:648:8:288:-16.2561,0,-48.4208	1/1:117:0,117:0:0:117:4173:-341.53,-35.2205,0	0/1:125:53,72:53:1887:72:2576:-173.644,0,-125.746	1/1:143:0,143:0:0:143:5124:-419.732,-43.0473,0	0/1:44:23,21:23:815:21:733:-47.4402,0,-56.3816	0/1:50:26,24:26:932:24:860:-55.4695,0,-65.4696	1/1:95:0,95:0:0:95:3383:-278.758,-28.5979,0	0/1:134:74,60:74:2634:60:2141:-134.205,0,-185.172	0/1:76:34,42:34:1224:42:1504:-101.206,0,-81.7655	0/1:80:36,44:36:1296:44:1553:-102.967,0,-85.4549	0/1:33:11,22:11:392:22:784:-55.4585,0,-24.3215	1/1:41:0,41:0:0:41:1464:-121.041,-12.3422,0	0/1:54:24,30:24:856:30:1072:-70.7492,0,-58.1032	0/1:43:19,24:19:676:24:841:-56.9476,0,-45.0857	1/1:30:0,30:0:0:30:1076:-89.1827,-9.0309,0	0/1:30:13,17:13:455:17:604:-40.2275,0,-30.7828	1/1:57:0,57:0:0:57:2029:-163.088,-17.1587,0	1/1:33:0,33:0:0:33:1188:-96.6966,-9.93399,0	1/1:10:0,10:0:0:10:356:-29.7986,-3.0103,0	1/1:195:0,195:0:0:195:6946:-571.512,-58.7009,0	0/1:97:51,46:51:1828:46:1648:-106.518,0,-128.778	1/1:128:0,128:0:0:128:4539:-374.228,-38.5318,0	0/1:73:35,38:35:1252:38:1353:-89.9287,0,-86.1138	0/1:127:58,69:58:2068:69:2444:-162.68,0,-140.802	0/1:55:29,26:29:1032:26:928:-60.5285,0,-72.9903	1/1:216:2,214:2:72:214:7625:-620.047,-58.4589,0	1/1:155:0,155:0:0:155:5529:-453.143,-46.6597,0	1/1:19:0,19:0:0:19:684:-56.7432,-5.71957,0	0/1:209:112,97:112:3999:97:3430:-221.027,0,-280.145	0/1:143:71,72:71:2544:72:2584:-169.007,0,-175.896	1/1:108:0,108:0:0:108:3838:-317.328,-32.5112,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-15.1755,-1.50515,0	0/1:5:3,2:3:108:2:72:-4.22832,0,-8.16742	0/1:5:4,1:4:144:1:36:-1.79387,0,-11.2765	1/1:1:0,1:0:0:1:36:-3.29902,-0.30103,0	0/1:128:60,68:60:2148:68:2432:-160.813,0,-146.659	1/1:187:0,187:0:0:187:6716:-550.112,-56.2926,0	1/1:23:0,23:0:0:23:824:-67.8896,-6.92369,0	0/1:6:5,1:5:180:1:36:-1.49284,0,-14.0845	1/1:139:0,139:0:0:139:4976:-410.214,-41.8432,0	1/1:9:0,9:0:0:9:324:-27.052,-2.70927,0	0/1:143:68,75:68:2444:75:2677:-177.261,0,-167.814	0/1:30:12,18:12:420:18:644:-44.5218,0,-27.7556	0/1:50:26,24:26:932:24:860:-56.4568,0,-65.0316	0/1:77:37,40:37:1324:40:1409:-93.1082,0,-91.6259	0/1:100:49,50:49:1747:50:1792:-118.213,0,-120.269	1/1:148:0,148:0:0:148:5270:-435.837,-44.5524,0	1/1:130:0,130:0:0:130:4656:-383.168,-39.1339,0	0/1:111:62,49:62:2224:49:1730:-109.206,0,-158.521	0/1:193:125,68:125:4473:68:2417:-140.502,0,-327.921	0/1:9:2,7:2:72:7:244:-17.9574,0,-3.85426	1/1:123:0,123:0:0:123:4381:-360.041,-37.0267,0	1/1:36:0,35:0:0:35:1256:-102.983,-10.5361,0	0/1:17:5,12:5:180:12:432:-30.8419,0,-10.7731	0/1:91:57,34:57:2048:34:1212:-73.2241,0,-148.858	1/1:52:0,52:0:0:52:1849:-153.015,-15.6536,0	0/1:4:2,2:2:72:2:72:-5.06403,0,-5.35941	0/1:3:1,2:1:32:2:72:-5.36506,0,-2.23306	0/1:80:46,34:46:1648:34:1216:-76.0625,0,-117.869	1/1:85:0,85:0:0:85:3048:-249.68,-25.5876,0	.:.:.:.:.:.:.:.	1/1:131:0,131:0:0:131:4665:-383.139,-39.4349,0	1/1:107:0,107:0:0:107:3814:-314.108,-32.2102,0	1/1:81:0,81:0:0:81:2885:-237.516,-24.3834,0	1/1:62:0,61:0:0:61:2188:-180.517,-18.3628,0	1/1:122:1,121:1:36:121:4348:-354.928,-33.2712,0	1/1:106:4,102:4:144:102:3648:-286.522,-19.1276,0	1/1:9:0,9:0:0:9:320:-26.0711,-2.70927,0	1/1:91:0,91:0:0:91:3230:-262.824,-27.3937,0	1/1:68:0,68:0:0:68:2432:-201.349,-20.47,0	0/1:27:11,16:11:396:16:576:-39.708,0,-25.975	1/1:91:0,91:0:0:91:3260:-262.366,-27.3937,0	0/1:58:24,34:24:852:34:1220:-81.5923,0,-56.5787	0/1:152:80,72:80:2859:72:2576:-166.265,0,-199.028	1/1:153:0,153:0:0:153:5461:-449.321,-46.0576,0	1/1:63:0,63:0:0:63:2260:-184.914,-18.9649,0	1/1:127:2,125:2:72:125:4480:-360.083,-31.6673,0	0/1:19:11,8:11:396:8:288:-17.0082,0,-28.7973	1/1:142:0,142:0:0:142:5100:-419.16,-42.7463,0	1/1:77:0,77:0:0:77:2734:-222.609,-23.1793,0	1/1:129:0,129:0:0:129:4581:-376.072,-38.8329,0	1/1:86:0,86:0:0:86:3076:-250.402,-25.8886,0	1/1:34:0,34:0:0:34:1216:-100.839,-10.235,0	0/1:43:22,21:22:788:21:756:-48.7187,0,-55.5121	1/1:77:1,76:1:36:76:2712:-219.431,-19.7248,0	0/1:38:15,23:15:540:23:820:-54.1991,0,-35.5419	1/1:54:0,53:0:0:53:1900:-155.039,-15.9546,0	1/1:40:0,40:0:0:40:1424:-115.583,-12.0412,0	1/1:15:0,15:0:0:15:536:-43.7014,-4.51545,0	0/1:47:21,26:21:752:26:924:-61.9667,0,-50.9295	0/1:35:23,12:23:816:12:432:-25.4233,0,-60.3557	1/1:74:0,74:0:0:74:2640:-218.09,-22.2762,0	1/1:37:0,37:0:0:37:1324:-108.957,-11.1381,0
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chr06	11178754	.	G	A	163812	PASS	AB=0.4285;ABP=180.628;AC=141;AF=0.758065;AN=186;AO=7652;CIGAR=1X;DP=9962;DPB=9962;DPRA=27.6389;EPP=16619.1;EPPR=5016.94;GTI=1;LEN=1;MEANALT=1.01111;MQM=59.5225;MQMR=60;NS=93;NUMALT=1;ODDS=1.41704;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273177;QR=82831;RO=2309;RPL=7652;RPP=16619.1;RPPR=5016.94;RPR=0;RUN=1;SAF=0;SAP=16619.1;SAR=7652;SRF=0;SRP=5016.94;SRR=2309;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	1/1:118:0,118:0:0:118:4195:-377.688,-35.5215,0	0/1:125:90,35:90:3213:35:1256:-75.692,0,-251.763	1/1:237:2,235:2:72:235:8403:-749.354,-64.5074,0	0/1:105:56,49:56:2012:49:1745:-125.43,0,-149.745	0/1:77:43,34:43:1548:34:1224:-87.2796,0,-116.434	1/1:150:0,150:0:0:150:5316:-477.993,-45.1545,0	0/1:194:125,69:125:4492:69:2434:-160.897,0,-346.047	0/1:88:44,44:44:1565:44:1565:-114.649,0,-114.649	0/1:115:53,62:53:1904:62:2232:-166.525,0,-137.019	0/1:54:32,22:32:1152:22:792:-55.3439,0,-87.7345	1/1:74:0,74:0:0:74:2640:-237.819,-22.2762,0	0/1:81:37,44:37:1332:44:1550:-115.396,0,-95.799	0/1:74:42,32:42:1508:32:1144:-80.9933,0,-113.738	1/1:65:0,65:0:0:65:2313:-208.411,-19.567,0	0/1:56:38,18:38:1364:18:640:-41.061,0,-106.203	1/1:49:0,49:0:0:49:1748:-157.49,-14.7505,0	1/1:53:0,53:0:0:53:1904:-171.627,-15.9546,0	1/1:56:0,56:0:0:56:2004:-180.323,-16.8577,0	1/1:319:0,319:0:0:319:11346:-1020.93,-96.0286,0	0/1:176:90,86:90:3224:86:3038:-220.609,0,-237.401	1/1:150:0,150:0:0:150:5349:-481.488,-45.1545,0	0/1:68:18,50:18:644:50:1796:-141.44,0,-37.8206	0/1:104:39,65:39:1404:65:2326:-178.204,0,-95.3522	0/1:102:58,44:58:2080:44:1580:-111.764,0,-156.765	1/1:379:1,378:1:36:378:13547:-1215.16,-110.492,0	1/1:108:0,108:0:0:108:3863:-347.848,-32.5112,0	1/1:46:0,46:0:0:46:1656:-149.316,-13.8474,0	0/1:355:262,93:262:9400:93:3295:-189.788,0,-739.094	0/1:177:101,76:101:3624:76:2721:-191.592,0,-273.082	1/1:174:1,173:1:32:173:6189:-553.454,-49.1799,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:246:128,118:128:4604:118:4200:-304.099,0,-340.468	1/1:249:0,249:0:0:249:8906:-801.22,-74.9565,0	1/1:64:0,64:0:0:64:2270:-204.535,-19.2659,0	0/1:9:2,7:2:72:7:252:-20.0892,0,-4.12745	1/1:127:0,127:0:0:127:4499:-404.639,-38.2308,0	1/1:36:0,36:0:0:36:1288:-116.199,-10.8371,0	0/1:144:100,44:100:3581:44:1580:-99.131,0,-279.147	0/1:59:25,34:25:892:34:1216:-91.9796,0,-62.8389	0/1:61:26,35:26:936:35:1256:-94.8358,0,-66.1966	0/1:104:51,53:51:1836:53:1882:-138.299,0,-134.214	0/1:151:95,56:95:3408:56:2016:-136.127,0,-261.478	1/1:177:0,177:0:0:177:6318:-568.57,-53.2823,0	1/1:174:0,173:0:0:173:6144:-552.63,-52.0782,0	0/1:197:142,55:142:5080:55:1946:-116.075,0,-398.042	0/1:185:97,88:97:3484:88:3130:-226.191,0,-258.08	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:142:0,142:0:0:142:5051:-454.642,-42.7463,0	1/1:48:0,48:0:0:48:1717:-154.812,-14.4494,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:163:87,76:87:3124:76:2728:-196.642,0,-232.318	1/1:43:0,43:0:0:43:1548:-139.595,-12.9443,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:108:59,49:59:2120:49:1764:-126.503,0,-158.557	1/1:126:0,126:0:0:126:4523:-407.203,-37.9298,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:225:0,225:0:0:225:8010:-720.201,-67.7318,0	1/1:217:3,214:3:108:214:7668:-679.485,-55.2483,0	1/1:93:0,93:0:0:93:3306:-297.742,-27.9958,0	1/1:102:0,102:0:0:102:3641:-327.339,-30.7051,0	1/1:192:2,190:2:72:190:6778:-603.184,-50.961,0	1/1:148:0,148:0:0:148:5271:-474.486,-44.5524,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:75:0,75:0:0:75:2688:-242.132,-22.5773,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:21:12,9:12:428:9:324:-23.1842,0,-32.5372	1/1:106:0,106:0:0:106:3777:-340.064,-31.9092,0	0/1:77:39,38:39:1400:38:1364:-99.8723,0,-103.12	0/1:168:93,75:93:3325:75:2696:-192.3,0,-248.893	1/1:173:0,173:0:0:173:6189:-556.996,-52.0782,0	1/1:44:1,43:1:36:43:1540:-135.278,-9.64705,0	1/1:81:0,81:0:0:81:2885:-259.77,-24.3834,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	1/1:171:0,171:0:0:171:6109:-549.851,-51.4761,0	1/1:125:1,124:1:36:124:4417:-394.008,-34.0305,0	1/1:324:0,324:0:0:324:11542:-1038.59,-97.5337,0	1/1:108:0,108:0:0:108:3865:-348.015,-32.5112,0	1/1:58:0,58:0:0:58:2084:-187.762,-17.4597,0	0/1:80:44,36:44:1584:36:1296:-92.8488,0,-118.769	1/1:160:0,160:0:0:160:5710:-513.805,-48.1648,0	0/1:47:27,20:27:972:20:720:-50.964,0,-73.6495	1/1:66:0,66:0:0:66:2368:-213.337,-19.868,0	1/1:63:0,63:0:0:63:2264:-203.981,-18.9649,0	1/1:25:0,25:0:0:25:892:-80.589,-7.52575,0	0/1:79:46,33:46:1647:33:1188:-83.4457,0,-124.736	0/1:89:57,32:57:2048:32:1137:-75.8386,0,-157.8	1/1:63:0,63:0:0:63:2245:-202.073,-18.9649,0	1/1:108:0,108:0:0:108:3850:-346.512,-32.5112,0
chr06	11183322	.	T	G	29466.9	PASS	AB=0.47388;ABP=25.3579;AC=44;AF=0.236559;AN=186;AO=1808;CIGAR=1X;DP=10045;DPB=10045;DPRA=0.81367;EPP=3903.02;EPPR=17835.2;GTI=4;LEN=1;MEANALT=1.04255;MQM=59.9524;MQMR=59.99;NS=93;NUMALT=1;ODDS=0.00066659;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64303;QR=295397;RO=8232;RPL=3;RPP=3903.02;RPPR=17835.2;RPR=1805;RUN=1;SAF=0;SAP=3929.03;SAR=1808;SRF=0;SRP=17878.6;SRR=8232;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:20,7:20:716:7:248:-14.5364,0,-56.6399	0/0:137:135,2:135:4852:2:72:0,-34.4044,-429.995	0/1:275:131,144:131:4696:144:5156:-381.398,0,-340.016	0/0:186:186,0:186:6680:0:0:0,-55.9916,-601.274	0/1:64:32,32:32:1152:32:1146:-84.1835,0,-84.7242	0/1:67:39,28:39:1396:28:989:-69.153,0,-105.77	0/0:194:194,0:194:6964:0:0:0,-58.3998,-626.818	0/1:121:68,53:68:2444:53:1897:-134.583,0,-183.79	0/1:60:34,26:34:1220:26:923:-65.325,0,-92.045	0/1:89:61,28:61:2180:28:1008:-64.2447,0,-169.675	0/1:136:65,71:65:2332:71:2524:-186.47,0,-169.199	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/1:69:35,34:35:1260:34:1200:-87.5318,0,-92.9344	0/1:164:84,80:84:3012:80:2863:-208.538,0,-221.942	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:72:37,35:37:1332:35:1236:-89.8673,0,-98.5082	0/0:136:136,0:136:4867:0:0:0,-40.9401,-437.755	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.482	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:277:277,0:277:9940:0:0:0,-83.3853,-894.536	0/1:127:68,59:68:2440:59:2110:-151.928,0,-181.624	0/0:148:148,0:148:5308:0:0:0,-44.5524,-477.853	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/1:86:55,31:55:1980:31:1103:-73.6912,0,-152.586	0/1:79:46,33:46:1648:33:1154:-80.3834,0,-124.827	0/0:260:260,0:260:9306:0:0:0,-78.2678,-837.503	0/0:168:165,1:165:5909:1:36:0,-46.7325,-528.319	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:291:153,138:153:5481:138:4926:-355.88,0,-405.815	0/1:115:68,47:68:2425:47:1684:-117.229,0,-183.886	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:202:108,93:108:3880:93:3271:-233.74,0,-288.526	0/0:277:277,0:277:9944:0:0:0,-83.3853,-894.895	0/0:132:132,0:132:4748:0:0:0,-39.736,-427.476	.:.:.:.:.:.:.:.	0/0:166:166,0:166:5956:0:0:0,-49.971,-536.146	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:159:87,72:87:3120:72:2565:-183.129,0,-233.033	0/1:66:33,33:33:1188:33:1164:-85.1971,0,-87.3606	0/1:70:39,31:39:1400:31:1086:-76.974,0,-105.227	0/1:71:31,40:31:1082:40:1419:-106.634,0,-76.3116	0/1:120:59,61:59:2120:61:2180:-160.343,0,-154.945	0/0:151:150,1:150:5384:1:36:0,-41.8573,-481.055	0/0:134:133,1:133:4776:1:36:0,-36.7397,-426.397	0/1:153:85,68:85:3048:68:2436:-173.438,0,-228.492	0/1:131:67,64:67:2404:64:2272:-165.305,0,-177.182	0/1:10:3,7:3:104:7:252:-20.0187,0,-6.69251	0/0:205:205,0:205:7348:0:0:0,-61.7111,-661.367	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:8:4,4:4:144:4:129:-9.51942,0,-10.9054	0/1:129:70,59:70:2516:59:2112:-151.516,0,-187.859	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:15:9,6:9:324:6:210:-14.7262,0,-24.9904	0/1:96:48,48:48:1724:48:1711:-125.376,0,-126.547	0/0:196:196,0:196:7040:0:0:0,-59.0019,-633.658	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:153:153,0:153:5480:0:0:0,-46.0576,-493.327	0/0:185:183,2:183:6565:2:72:0,-48.8538,-584.089	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:157:157,0:157:5636:0:0:0,-47.2617,-507.354	0/0:130:130,0:130:4653:0:0:0,-39.1339,-418.93	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/0:110:109,0:109:3916:0:0:0,-32.8123,-352.272	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/1:43:18,25:18:648:25:870:-65.6317,0,-45.7076	0/0:213:213,0:213:7656:0:0:0,-64.1194,-689.071	0/1:52:21,31:21:756:31:1088:-82.5729,0,-52.7137	0/1:112:61,51:61:2196:51:1794:-128.025,0,-164.19	0/0:145:145,0:145:5200:0:0:0,-43.6493,-468.138	0/0:180:180,0:180:6455:0:0:0,-54.1854,-581.034	0/0:87:87,0:87:3113:0:0:0,-26.1896,-280.395	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/0:182:182,0:182:6548:0:0:0,-54.7875,-589.398	0/0:185:185,0:185:6631:0:0:0,-55.6905,-596.867	0/0:97:96,0:96:3444:0:0:0,-28.8989,-309.852	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:69:39,30:39:1400:30:1063:-75.2098,0,-105.528	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/1:30:14,16:14:504:16:549:-40.7015,0,-36.6672	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.786	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.56	0/1:272:142,130:142:5091:130:4651:-336.871,0,-376.452	0/1:79:21,58:21:752:58:2066:-162.429,0,-44.2249	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/0:122:122,0:122:4392:0:0:0,-36.7257,-395.45
chr06	11281227	.	TCCCAT	TCCAT,TTCCAT	102041	PASS	AB=0.41369,0.188003;ABP=133.454,1158.81;AC=100,41;AF=0.543478,0.222826;AN=184;AO=3668,1337;CIGAR=1M1D4M,1M1X4M;DP=6425;DPB=5818.5;DPRA=1.14874,1.6813;EPP=7967.97,2906.27;EPPR=3040.9;GTI=5;LEN=1,1;MEANALT=1.81429,1.86667;MQM=59.988,59.9873;MQMR=59.9914;NS=92;NUMALT=2;ODDS=0.387018;PAIRED=0,0;PAIREDR=0;PAO=15.6667,15.6667;PQA=558.667,558.667;PQR=558.667;PRO=15.6667;QA=128372,47759;QR=48703;RO=1399;RPL=0,0;RPP=7967.97,2906.27;RPPR=3040.9;RPR=3668,1337;RUN=1,1;SAF=0,0;SAP=7967.97,2906.27;SAR=3668,1337;SRF=0;SRP=3040.9;SRR=1399;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:16,0,1:16:547:0,1:0,36:0,-4.81648,-49.1926,-1.51923,-46.2541,-45.9531	2/2:94:0,0,94:0:0:0,94:0,3357:-302.083,-302.083,-302.083,-28.2968,-28.2968,0	0/2:97:46,1,50:46:1579:1,50:32,1783:-131.377,-142.647,-270.542,0,-125.494,-113.02	1/1:198:2,189,7:2:71:189,7:6683,248:-594.805,-51.1127,0,-575.204,-36.7334,-578.882	0/1:46:23,23,0:23:809:23,0:799,0:-58.3802,0,-59.2834,-65.3039,-66.2071,-131.162	0/2:24:12,0,12:12:422:0,12:0,424:-31.2233,-34.8357,-69.184,0,-34.6544,-31.0421	1/1:46:0,43,2:0:0:43,2:1509,72:-135.782,-12.9443,0,-129.907,-6.96957,-129.305	0/2:128:85,0,43:85:2984:0,43:0,1539:-100.122,-125.71,-368.562,0,-243.105,-230.161	0/2:26:17,0,9:17:591:0,9:0,324:-21.6791,-26.7966,-74.8388,0,-48.3978,-45.6885	0/1:50:26,24,0:26:923:24,0:851,0:-61.858,0,-68.3365,-69.6847,-75.5612,-144.891	0/1:33:16,17,0:16:553:17,0:595,0:-43.9427,0,-40.162,-48.7592,-45.2795,-93.6911	2/2:86:1,0,85:1:35:0,85:0,3039:-270.137,-270.438,-273.285,-22.39,-25.5876,0	0/2:53:29,0,23:29:1009:0,23:0,824:-58.4194,-67.1493,-149.186,0,-81.9806,-75.0569	0/1:46:21,25,0:21:712:25,0:879,0:-65.5794,0,-50.5462,-71.901,-58.072,-129.628	1/1:56:0,56,0:0:0:56,0:1976,0:-178.112,-16.8577,0,-178.112,-16.8577,-178.112	0/1:48:30,17,1:30:1050:17,1:595,36:-39.369,0,-80.3014,-45.4619,-82.4812,-130.59	2/2:89:0,0,89:0:0:0,89:0,3192:-287.503,-287.503,-287.503,-26.7917,-26.7917,0	2/2:56:0,1,55:0:0:1,55:32,1967:-176.88,-174.302,-174.001,-16.5567,-13.6584,0	2/2:28:0,0,28:0:0:0,28:0,1008:-90.9854,-90.9854,-90.9854,-8.42884,-8.42884,0	1/1:131:0,128,3:0:0:128,3:4531,108:-407.6,-38.5318,0,-398.788,-29.3598,-397.884	0/1:48:36,12,0:36:1249:12,0:423,0:-23.9556,0,-98.2615,-34.7927,-101.874,-136.316	1/1:153:0,150,1:0:0:150,1:5232,32:-470.68,-45.1545,0,-468.102,-42.5894,-467.801	0/1:47:34,13,0:34:1199:13,0:464,0:-27.9491,0,-94.0675,-38.1841,-97.9809,-135.809	0/1:69:43,25,1:43:1495:25,1:884,36:-59.0478,0,-114.011,-69.0544,-118.599,-190.298	0/1:23:7,13,2:7:243:13,2:460,72:-35.3858,0,-15.8568,-31.6165,-13.8904,-50.7683	1/1:224:0,219,2:0:0:219,2:7701,72:-692.816,-65.9256,0,-686.942,-60.0214,-686.339	1/1:119:0,113,6:0:0:113,6:3960,212:-356.242,-34.0164,0,-338.976,-16.3978,-337.17	1/2:30:0,26,4:0:0:26,4:888,144:-84.1548,-12.1095,-4.28272,-72.4027,0,-71.1986	0/1:213:98,114,0:98:3443:114,0:4001,0:-296.115,0,-245.917,-325.616,-280.234,-605.852	0/1:139:90,48,0:90:3143:48,0:1695,0:-111.08,0,-241.345,-138.173,-255.794,-393.829	1/1:67:0,66,1:0:0:66,1:2291,36:-206.085,-19.868,0,-203.147,-16.5707,-202.846	0/1:8:4,4,0:4:138:4,0:144,0:-10.9054,0,-10.3519,-12.1095,-11.556,-23.3132	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	0/2:6:5,0,1:5:179:0,1:0,36:-1.79209,-3.29724,-17.893,0,-14.9552,-14.6542	0/2:5:4,0,1:4:142:0,1:0,36:-2.09312,-3.29724,-14.8636,0,-11.9252,-11.6241	.:.:.:.:.:.:.:.	0/1:238:123,114,1:123:4250:114,1:3996,36:-288.128,0,-310.989,-322.218,-342.369,-667.235	1/1:198:0,186,12:0:0:186,12:6411,428:-576.73,-55.9916,0,-541.839,-20.7935,-538.227	2/2:56:0,0,56:0:0:0,56:0,2004:-180.426,-180.426,-180.426,-16.8577,-16.8577,0	.:.:.:.:.:.:.:.	1/1:130:0,125,4:0:0:125,4:4328,140:-389.371,-37.6288,0,-377.98,-26.1583,-376.776	1/1:24:0,22,1:0:0:22,1:784,27:-70.5747,-6.62266,0,-68.4495,-4.52884,-68.1485	0/1:100:72,27,1:72:2504:27,1:950,36:-55.6519,0,-195.452,-74.3884,-200.642,-277.676	0/1:69:38,29,2:38:1325:29,2:1000,72:-69.7793,0,-99.0194,-75.3427,-101.874,-182.503	0/1:64:29,33,2:29:992:33,2:1151,59:-84.9334,0,-70.6267,-88.9592,-75.8566,-168.871	0/1:38:26,12,0:26:897:12,0:428,0:-27.4197,0,-69.6036,-35.2464,-73.2159,-108.11	0/2:50:20,0,30:20:707:0,30:0,1076:-81.8972,-87.9178,-145.494,0,-57.7338,-48.7029	1/1:177:1,173,3:1:36:173,3:6082,108:-543.892,-49.1408,0,-535.38,-43.2659,-537.415	1/1:68:0,67,0:0:0:67,0:2355,0:-211.85,-20.169,0,-211.85,-20.169,-211.85	0/1:92:60,31,1:60:2120:31,1:1092,36:-70.8363,0,-163.316,-85.9604,-169.711,-258.315	0/1:71:39,32,0:39:1380:32,0:1116,0:-79.3742,0,-103.125,-91.1144,-112.758,-203.522	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	2/2:103:1,1,101:1:36:1,101:32,3607:-321.206,-318.929,-321.565,-27.4995,-27.8984,0	1/1:14:0,13,1:0:0:13,1:451,25:-40.6629,-3.91339,0,-38.721,-1.71456,-38.42	0/2:12:7,0,5:7:247:0,5:0,180:-12.9397,-15.0469,-35.1561,0,-20.4661,-18.9609	0/1:76:39,37,0:39:1353:37,0:1263,0:-91.0854,0,-99.1891,-102.826,-110.327,-212.809	1/1:32:0,31,1:0:0:31,1:1073,36:-96.5163,-9.33193,0,-93.5784,-6.03469,-93.2774	0/1:4:2,2,0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chr06	11357253	.	C	T	127068	PASS	AB=0.462864;ABP=43.3303;AC=143;AF=0.768817;AN=186;AO=6031;CIGAR=1X;DP=7874;DPB=7874;DPRA=43.2418;EPP=13099.2;EPPR=3996.35;GTI=0;LEN=1;MEANALT=1.04396;MQM=59.9829;MQMR=60;NS=93;NUMALT=1;ODDS=0.140406;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214060;QR=64854;RO=1839;RPL=3;RPP=13073.1;RPPR=3996.35;RPR=6028;RUN=1;SAF=3;SAP=13073.1;SAR=6028;SRF=0;SRP=3996.35;SRR=1839;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:33,22:33:1147:22:784:-54.3273,0,-86.9756	1/1:57:0,57:0:0:57:2027:-182.701,-17.1587,0	0/1:138:76,62:76:2679:62:2203:-156.993,0,-199.812	1/1:203:1,202:1:36:202:7214:-645.717,-57.5108,0	0/1:45:30,15:30:1068:15:536:-35.0285,0,-82.8857	0/1:47:22,25:22:780:25:896:-66.8119,0,-56.3746	1/1:86:0,86:0:0:86:3041:-273.918,-25.8886,0	0/1:173:96,77:96:3410:77:2737:-194.494,0,-255.034	0/1:83:41,42:41:1430:42:1495:-109.858,0,-104.009	0/1:87:50,37:50:1779:37:1332:-93.9928,0,-134.203	0/1:69:37,32:37:1315:32:1148:-82.8588,0,-97.88	1/1:135:0,135:0:0:135:4770:-429.453,-40.6391,0	0/1:84:50,34:50:1771:34:1200:-83.0191,0,-134.386	0/1:62:33,29:33:1151:29:1044:-75.6109,0,-85.2314	1/1:76:0,76:0:0:76:2692:-242.524,-22.8783,0	0/1:81:39,42:39:1387:42:1487:-109.74,0,-100.745	1/1:45:0,45:0:0:45:1591:-143.478,-13.5464,0	1/1:43:0,43:0:0:43:1505:-135.741,-12.9443,0	1/1:33:0,33:0:0:33:1167:-105.336,-9.93399,0	1/1:139:0,139:0:0:139:4904:-441.516,-41.8432,0	0/1:184:102,82:102:3596:82:2911:-206.837,0,-268.457	1/1:110:1,109:1:36:109:3885:-346.247,-29.515,0	0/1:125:57,68:57:2043:68:2424:-180.788,0,-146.512	0/1:84:44,40:44:1520:40:1426:-103.349,0,-111.8	0/1:65:31,34:31:1080:34:1211:-89.7286,0,-77.9388	1/1:205:1,203:1:36:203:7193:-643.834,-58.1717,0	1/1:120:0,120:0:0:120:4291:-386.367,-36.1236,0	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	0/1:299:165,134:165:5868:134:4760:-338.551,0,-438.225	0/1:136:84,52:84:2937:52:1843:-125.209,0,-223.622	1/1:107:1,106:1:36:106:3763:-335.274,-28.6119,0	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	0/1:228:112,116:112:3901:116:4099:-300.461,0,-282.652	1/1:107:0,107:0:0:107:3810:-343.098,-32.2102,0	1/1:42:0,42:0:0:42:1479:-133.404,-12.6433,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:166:0,166:0:0:166:5860:-527.425,-49.971,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:148:79,69:79:2802:69:2455:-176.652,0,-207.868	0/1:52:27,25:27:946:25:887:-64.4946,0,-69.7993	0/1:68:31,37:31:1062:37:1315:-98.181,0,-75.4126	0/1:81:42,39:42:1493:39:1375:-99.6636,0,-110.279	0/1:69:40,29:40:1419:29:1044:-73.5037,0,-107.236	1/1:152:6,146:6:216:146:5166:-445.296,-25.966,0	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	0/1:82:51,31:51:1832:31:1104:-74.9862,0,-140.476	0/1:77:42,35:42:1489:35:1256:-90.166,0,-111.123	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:90:0,90:0:0:90:3165:-285.075,-27.0927,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:149:82,67:82:2894:67:2392:-170.684,0,-215.839	1/1:43:0,43:0:0:43:1539:-138.802,-12.9443,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:88:49,39:49:1739:39:1383:-98.2774,0,-130.303	1/1:82:0,82:0:0:82:2926:-263.575,-24.6845,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:150:0,150:0:0:150:5339:-480.646,-45.1545,0	1/1:112:5,107:5:180:107:3810:-326.545,-17.1633,0	1/1:54:0,54:0:0:54:1911:-172.266,-16.2556,0	1/1:109:0,109:0:0:109:3864:-347.959,-32.8123,0	1/1:207:4,203:4:144:203:7210:-635.645,-48.9996,0	1/1:106:2,104:2:72:104:3676:-324.203,-25.0725,0	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	1/1:60:0,60:0:0:60:2135:-192.415,-18.0618,0	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:80:1,79:1:36:79:2817:-250.17,-20.4841,0	0/1:53:26,27:26:890:27:964:-71.1222,0,-64.454	0/1:174:93,81:93:3287:81:2892:-208.137,0,-243.67	1/1:73:0,73:0:0:73:2604:-234.609,-21.9752,0	1/1:76:2,73:2:72:73:2599:-227.322,-16.1004,0	1/1:92:1,91:1:36:91:3227:-287.056,-24.0965,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:155:0,155:0:0:155:5479:-493.241,-46.6597,0	1/1:98:0,98:0:0:98:3485:-313.862,-29.5009,0	1/1:54:1,53:1:32:53:1863:-164.75,-13.0563,0	1/1:102:0,102:0:0:102:3606:-324.748,-30.7051,0	0/1:68:27,40:27:939:40:1424:-107.929,0,-64.2943	1/1:139:1,138:1:27:138:4874:-436.118,-39.1434,0	0/1:33:21,12:21:728:12:428:-28.9248,0,-55.9037	1/1:80:0,80:0:0:80:2828:-254.759,-24.0824,0	1/1:103:0,102:0:0:102:3565:-320.789,-30.7051,0	1/1:40:0,40:0:0:40:1404:-126.654,-12.0412,0	0/1:73:27,46:27:934:46:1631:-125.103,0,-62.3961	0/1:68:46,22:46:1611:22:784:-50.4139,0,-124.808	1/1:159:1,158:1:36:158:5622:-502.502,-44.2655,0	1/1:138:0,138:0:0:138:4881:-439.448,-41.5421,0
chr06	11357622	.	A	G	70353.8	PASS	AB=0.46765;ABP=27.0345;AC=146;AF=0.776596;AN=188;AO=5350;CIGAR=1X;DP=6775;DPB=6775;DPRA=24.2724;EPP=11620.4;EPPR=3088.67;GTI=2;LEN=1;MEANALT=1.03226;MQM=27.2316;MQMR=34.7178;NS=94;NUMALT=1;ODDS=0.902971;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190816;QR=50814;RO=1421;RPL=0;RPP=11620.4;RPPR=3088.67;RPR=5350;RUN=1;SAF=5350;SAP=11620.4;SAR=0;SRF=1421;SRP=3088.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:22,23:22:788:23:824:-41.4833,0,-48.6775	1/1:139:0,139:0:0:139:4961:-332.038,-41.8432,0	0/1:110:57,53:57:2040:53:1896:-93.6913,0,-128.982	1/1:141:0,141:0:0:141:4972:-333.306,-42.4452,0	0/1:47:16,31:16:572:31:1108:-59.7259,0,-30.0885	0/1:43:28,15:28:989:15:536:-23.0153,0,-66.4547	1/1:93:0,93:0:0:93:3308:-221.386,-27.9958,0	0/1:129:56,73:56:1993:73:2586:-134.939,0,-119.328	0/1:68:48,20:48:1724:20:701:-26.8244,0,-117.254	0/1:66:40,25:40:1440:25:896:-40.0182,0,-96.7761	0/1:30:23,7:23:824:7:248:-7.85822,0,-56.6826	1/1:55:0,55:0:0:55:1957:-131.478,-16.5567,0	0/1:58:33,25:33:1184:25:896:-42.3374,0,-77.0259	0/1:69:35,34:35:1256:34:1224:-61.3535,0,-79.1571	1/1:44:0,44:0:0:44:1565:-104.037,-13.2453,0	0/1:46:26,20:26:936:20:720:-34.3223,0,-61.7959	1/1:59:0,59:0:0:59:2116:-140.783,-17.7608,0	1/1:46:0,46:0:0:46:1652:-109.446,-13.8474,0	1/1:22:0,22:0:0:22:788:-51.3341,-6.62266,0	1/1:82:0,82:0:0:82:2933:-195.168,-24.6845,0	0/1:115:66,49:66:2372:49:1756:-81.8022,0,-154.909	1/1:50:2,48:2:57:48:1720:-109.559,-10.0483,0	0/1:73:42,31:42:1500:31:1097:-51.262,0,-98.0543	0/1:88:49,39:49:1760:39:1396:-65.2502,0,-114.918	0/1:35:19,16:19:680:16:561:-27.2839,0,-44.1101	1/1:294:1,293:1:36:293:10470:-696.946,-85.3152,0	1/1:187:0,187:0:0:187:6724:-449.219,-56.2926,0	1/1:25:0,25:0:0:25:896:-60.6533,-7.52575,0	0/1:194:81,113:81:2896:113:4052:-211.912,0,-172.162	0/1:127:75,52:75:2692:52:1868:-85.9274,0,-178.839	1/1:106:2,104:2:72:104:3728:-243.41,-25.8527,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.92535	1/1:16:0,16:0:0:16:576:-38.8352,-4.81648,0	0/1:8:6,2:6:212:2:72:-2.6241,0,-14.8592	0/1:6:2,4:2:72:4:144:-7.99364,0,-4.25031	1/1:6:0,6:0:0:6:216:-14.5673,-1.80618,0	0/1:118:66,52:66:2368:52:1863:-88.9165,0,-154.772	1/1:199:0,199:0:0:199:7087:-474.125,-59.905,0	1/1:33:0,33:0:0:33:1173:-78.6813,-9.93399,0	1/1:1:0,1:0:0:1:36:-2.6486,-0.30103,0	1/1:98:0,98:0:0:98:3497:-234.131,-29.5009,0	1/1:15:0,15:0:0:15:540:-36.021,-4.51545,0	0/1:77:46,31:46:1652:31:1112:-50.7562,0,-108.663	0/1:45:19,26:19:684:26:928:-49.3453,0,-41.6525	0/1:53:36,17:36:1292:17:597:-24.2493,0,-87.4259	0/1:87:37,50:37:1320:50:1796:-93.2012,0,-80.2866	0/1:86:47,39:47:1669:39:1369:-67.2664,0,-108.956	1/1:120:1,119:1:36:119:4249:-279.589,-32.936,0	1/1:83:0,83:0:0:83:2935:-196.642,-24.9855,0	0/1:87:41,46:41:1476:46:1644:-84.9427,0,-91.626	0/1:103:42,61:42:1508:61:2177:-113.797,0,-87.5815	0/1:6:2,4:2:72:4:144:-7.99364,0,-4.25031	1/1:93:0,93:0:0:93:3325:-222.871,-27.9958,0	1/1:34:0,34:0:0:34:1224:-81.7409,-10.235,0	0/1:10:3,7:3:108:7:237:-13.3508,0,-5.91505	0/1:89:39,50:39:1404:50:1758:-91.7655,0,-83.9315	1/1:47:0,47:0:0:47:1680:-115.073,-14.1484,0	1/1:3:0,3:0:0:3:108:-7.41608,-0.90309,0	0/1:9:5,4:5:176:4:144:-7.09055,0,-11.7698	0/1:66:34,32:34:1197:32:1148:-56.6154,0,-77.4009	1/1:89:0,89:0:0:89:3181:-212.654,-26.7917,0	0/1:3:1,2:1:36:2:68:-4.06491,0,-2.28453	1/1:149:0,149:0:0:149:5303:-354.659,-44.8535,0	1/1:149:3,146:3:108:146:5221:-336.672,-35.5448,0	1/1:88:0,86:0:0:86:3030:-202.643,-25.8886,0	1/1:61:0,60:0:0:60:2121:-142.789,-18.0618,0	1/1:151:3,148:3:108:148:5259:-342.35,-36.5302,0	1/1:108:0,108:0:0:108:3831:-254.22,-32.5112,0	1/1:15:0,15:0:0:15:536:-35.9596,-4.51545,0	1/1:67:0,67:0:0:67:2392:-160.288,-20.169,0	1/1:51:0,51:0:0:51:1836:-122.528,-15.3525,0	0/1:23:15,8:15:540:8:288:-12.4111,0,-35.9393	1/1:53:0,53:0:0:53:1904:-125.324,-15.9546,0	0/1:60:37,23:37:1320:23:816:-35.7138,0,-89.6719	0/1:135:73,62:73:2552:62:2198:-106.371,0,-162.753	1/1:141:0,141:0:0:141:5006:-333.825,-42.4452,0	1/1:85:0,85:0:0:85:3048:-204.322,-25.5876,0	1/1:75:0,75:0:0:75:2692:-179.532,-22.5773,0	1/1:1:0,1:0:0:1:36:-2.6486,-0.30103,0	1/1:81:0,81:0:0:81:2882:-190.817,-24.3834,0	1/1:76:0,76:0:0:76:2709:-181.895,-22.8783,0	1/1:165:0,165:0:0:165:5833:-388.501,-49.67,0	1/1:78:0,78:0:0:78:2808:-186.336,-23.4803,0	1/1:43:0,43:0:0:43:1532:-103.005,-12.9443,0	0/1:61:31,30:31:1101:30:1072:-53.2107,0,-69.8714	1/1:96:0,96:0:0:96:3429:-229.822,-28.8989,0	0/1:25:15,10:15:540:10:356:-16.5149,0,-36.1116	1/1:47:0,47:0:0:47:1676:-112.868,-14.1484,0	1/1:43:0,43:0:0:43:1540:-102.799,-12.9443,0	1/1:26:0,26:0:0:26:932:-62.1809,-7.82678,0	0/1:73:41,32:41:1472:32:1140:-56.0563,0,-95.7899	0/1:70:52,18:52:1872:18:644:-22.0388,0,-126.345	1/1:40:0,40:0:0:40:1425:-95.0321,-12.0412,0	1/1:60:0,60:0:0:60:2138:-141.146,-18.0618,0
chr06	11360259	.	T	C	6753.59	PASS	AB=0.427549;ABP=79.4702;AC=43;AF=0.228723;AN=188;AO=726;CIGAR=1X;DP=4907;DPB=4907;DPRA=0.735991;EPP=1579.5;EPPR=9077.59;GTI=7;LEN=1;MEANALT=1;MQM=30.3072;MQMR=56.402;NS=94;NUMALT=1;ODDS=0.887842;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25995;QR=145968;RO=4179;RPL=726;RPP=1579.5;RPPR=9077.59;RPR=0;RUN=1;SAF=0;SAP=1579.5;SAR=726;SRF=0;SRP=9077.59;SRR=4179;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:13,2:13:460:2:72:-0.999803,0,-37.2095	0/0:66:66,0:66:2329:0:0:0,-19.868,-209.52	0/1:55:33,22:33:1146:22:788:-40.8467,0,-86.6522	0/0:91:91,0:91:3145:0:0:0,-27.3937,-282.896	0/1:17:7,10:7:248:10:360:-21.3686,0,-17.5373	0/1:17:3,14:3:108:14:504:-31.4355,0,-4.89777	0/0:59:59,0:59:2073:0:0:0,-17.7608,-186.506	0/1:48:28,20:28:996:20:716:-37.8465,0,-75.4136	0/1:16:6,10:6:201:10:356:-21.6759,0,-13.5959	0/1:41:24,17:24:840:17:608:-32.2561,0,-63.1781	0/1:66:23,43:23:797:43:1548:-91.7753,0,-52.0504	0/0:53:53,0:53:1877:0:0:0,-15.9546,-168.847	0/1:35:17,18:17:604:18:644:-36.9858,0,-44.1407	0/1:76:30,46:30:1072:46:1648:-97.3789,0,-73.803	0/0:55:55,0:55:1930:0:0:0,-16.5566,-173.148	0/1:31:20,11:20:708:11:396:-19.6957,0,-54.6595	0/0:56:56,0:56:1973:0:0:0,-16.8577,-177.552	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.219	0/0:27:27,0:27:926:0:0:0,-8.12781,-83.627	0/0:66:65,0:65:2255:0:0:0,-19.5669,-202.625	0/1:73:44,29:44:1549:29:1032:-54.1234,0,-117.632	0/0:71:71,0:71:2451:0:0:0,-21.3731,-220.662	0/1:9:2,7:2:72:7:252:-15.8684,0,-4.12336	0/1:44:39,5:39:1355:5:180:-0.107397,0,-108.806	0/1:21:4,17:4:144:17:604:-38.5958,0,-6.98566	0/0:160:160,0:160:5553:0:0:0,-48.1648,-499.21	0/0:141:141,0:141:4874:0:0:0,-42.4452,-438.475	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2545	0/1:102:67,35:67:2327:35:1256:-62.5435,0,-178.685	0/1:50:36,14:36:1239:14:500:-20.9185,0,-96.6772	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.9064	0/1:5:1,4:1:36:4:136:-9.02226,0,-2.09141	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7173	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0724	0/1:2:1,1:1:36:1:36:-2.3007,0,-2.99521	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0101	0/1:143:75,68:75:2631:68:2423:-138.699,0,-193.485	0/0:126:126,0:126:4344:0:0:0,-37.9298,-390.401	0/0:56:56,0:56:1969:0:0:0,-16.8577,-176.694	1/1:1:0,1:0:0:1:36:-2.90276,-0.30103,0	0/0:55:55,0:55:1925:0:0:0,-16.5566,-173.454	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.797	0/1:87:60,27:60:2084:27:968:-44.5339,0,-161.488	0/1:49:25,24:25:881:24:864:-48.782,0,-64.7645	0/1:38:22,16:22:780:16:568:-30.4424,0,-58.7861	0/1:80:54,26:54:1905:26:936:-47.1951,0,-147.598	0/1:44:27,17:27:911:17:612:-31.7153,0,-68.9153	0/0:122:122,0:122:4271:0:0:0,-36.7257,-383.713	0/0:77:77,0:77:2676:0:0:0,-23.1793,-240.637	0/1:71:47,24:47:1623:24:860:-41.5128,0,-124.758	0/1:60:46,14:46:1594:14:504:-20.3626,0,-125.518	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9367	0/0:77:77,0:77:2691:0:0:0,-23.1793,-242.371	0/0:28:28,0:28:977:0:0:0,-8.42884,-88.2155	0/1:11:7,4:7:252:4:144:-7.4289,0,-19.7121	0/1:29:16,13:16:530:13:468:-25.5228,0,-39.1966	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.2754	0/1:6:4,2:4:144:2:72:-3.99744,0,-11.5037	0/1:5:4,1:4:144:1:36:-1.54939,0,-11.8047	0/1:28:19,9:19:653:9:324:-15.2994,0,-50.273	0/0:113:113,0:113:3994:0:0:0,-34.0164,-359.115	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0679	0/0:96:96,0:96:3386:0:0:0,-28.8989,-304.732	0/0:106:103,3:103:3624:3:108:0,-23.2215,-317.194	0/0:51:51,0:51:1763:0:0:0,-15.3525,-158.742	0/0:44:44,0:44:1491:0:0:0,-13.2453,-134.209	0/0:93:90,3:90:3155:3:108:0,-19.868,-275.847	0/0:55:55,0:55:1859:0:0:0,-16.5566,-166.989	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.8909	0/0:68:68,0:68:2341:0:0:0,-20.47,-210.577	0/0:109:109,0:109:3839:0:0:0,-32.8123,-345.282	0/1:12:7,5:7:248:5:180:-9.74036,0,-19.0372	0/0:66:66,0:66:2314:0:0:0,-19.868,-208.396	0/1:25:18,7:18:644:7:248:-10.9468,0,-50.6799	0/1:55:40,15:40:1390:15:536:-22.8166,0,-108.043	0/0:49:48,0:48:1663:0:0:0,-14.4494,-149.639	0/0:86:86,0:86:2995:0:0:0,-25.8886,-269.626	0/0:62:62,0:62:2129:0:0:0,-18.6639,-191.674	1/1:2:0,2:0:0:2:68:-5.40597,-0.60206,0	0/0:37:37,0:37:1301:0:0:0,-11.1381,-117.34	0/0:42:42,0:42:1421:0:0:0,-12.6433,-128.019	0/0:111:111,0:111:3900:0:0:0,-33.4143,-350.432	0/0:95:95,0:95:3323:0:0:0,-28.5978,-298.918	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.211	0/1:43:21,22:21:721:22:792:-45.0784,0,-52.2043	0/0:86:86,0:86:3022:0:0:0,-25.8886,-271.762	0/1:32:16,16:16:553:16:568:-32.4298,0,-40.4421	0/0:66:66,0:66:2336:0:0:0,-19.868,-210.378	0/0:50:50,0:50:1761:0:0:0,-15.0515,-158.525	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.517	0/1:85:34,51:34:1196:51:1828:-107.989,0,-82.2931	0/1:51:20,31:20:693:31:1108:-65.7171,0,-47.2547	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.6263	0/0:78:78,0:78:2754:0:0:0,-23.4803,-247.457
chr06	11360277	.	T	C	6526.5	PASS	AB=0.417544;ABP=103.995;AC=42;AF=0.223404;AN=188;AO=730;CIGAR=1X;DP=5193;DPB=5193;DPRA=0.773014;EPP=1588.19;EPPR=9692.12;GTI=8;LEN=1;MEANALT=1.02222;MQM=30.3397;MQMR=56.4018;NS=94;NUMALT=1;ODDS=0.128301;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26164;QR=159471;RO=4462;RPL=730;RPP=1588.19;RPPR=9692.12;RPR=0;RUN=1;SAF=0;SAP=1588.19;SAR=730;SRF=0;SRP=9692.12;SRR=4462;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:16,2:16:557:2:72:-0.0967126,0,-44.8954	0/0:72:72,0:72:2580:0:0:0,-21.6742,-231.465	0/1:58:36,22:36:1277:22:792:-39.9941,0,-97.5743	0/0:95:95,0:95:3370:0:0:0,-28.5978,-303.144	0/1:20:10,10:10:345:10:360:-20.4655,0,-25.3477	0/1:16:3,13:3:108:13:461:-28.9854,0,-5.1988	0/0:64:64,0:64:2300:0:0:0,-19.2659,-206.812	0/1:49:30,19:30:1080:19:677:-34.7805,0,-82.6675	0/1:16:6,10:6:201:10:356:-21.7532,0,-13.5959	0/1:48:29,19:29:1040:19:676:-34.938,0,-78.9645	0/1:68:24,44:24:864:44:1580:-93.682,0,-57.4767	0/0:56:55,1:55:1980:1:36:0,-13.3367,-174.658	0/1:37:19,18:19:684:18:644:-36.3245,0,-50.7363	0/1:78:32,46:32:1152:46:1652:-96.8806,0,-80.3846	0/0:57:57,0:57:2048:0:0:0,-17.1587,-183.753	0/1:33:22,11:22:792:11:396:-19.0937,0,-61.5721	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.613	0/0:48:48,0:48:1720:0:0:0,-14.4494,-154.837	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.3089	0/0:71:71,0:71:2533:0:0:0,-21.3731,-227.782	0/1:75:46,29:46:1652:29:1040:-53.7657,0,-126.214	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.737	0/1:9:2,7:2:72:7:252:-15.8684,0,-4.12336	0/0:45:40,5:40:1428:5:176:0,-0.299469,-115.375	0/1:25:8,17:8:288:17:612:-37.6001,0,-18.7307	0/0:173:173,0:173:6182:0:0:0,-52.0782,-555.716	0/0:148:148,0:148:5286:0:0:0,-44.5524,-475.485	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7348	0/1:103:68,34:68:2410:34:1220:-59.5281,0,-185.884	0/1:51:37,14:37:1313:14:504:-20.7218,0,-102.966	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.8533	0/1:5:1,4:1:36:4:140:-9.12867,0,-2.09141	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.677	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2928	0/1:2:1,1:1:36:1:36:-2.3007,0,-2.99521	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9727	0/1:150:81,69:81:2881:69:2469:-139.629,0,-213.773	0/0:142:140,2:140:5005:2:72:0,-36.0563,-443.077	0/0:62:62,0:62:2228:0:0:0,-18.6639,-199.948	1/1:1:0,1:0:0:1:36:-2.90276,-0.30103,0	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.078	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.63	0/1:90:63,27:63:2255:27:972:-43.7348,0,-175.961	0/1:53:28,25:28:1008:25:900:-50.1902,0,-74.8962	0/1:41:25,16:25:896:16:576:-29.7479,0,-68.3102	0/1:85:60,25:60:2118:25:900:-42.9408,0,-165.245	0/1:49:31,18:31:1097:18:648:-33.0805,0,-84.1234	0/0:131:131,0:131:4673:0:0:0,-39.4349,-419.579	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.13	0/1:73:49,24:49:1730:24:864:-41.0148,0,-133.691	0/1:61:47,14:47:1669:14:496:-19.7796,0,-131.962	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9372	0/0:83:83,0:83:2973:0:0:0,-24.9855,-267.729	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1221	0/1:11:7,4:7:252:4:144:-7.4289,0,-19.7121	0/1:31:18,13:18:648:13:468:-24.9207,0,-49.2237	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.5957	0/1:6:4,2:4:144:2:72:-3.99744,0,-11.5037	0/1:6:5,1:5:180:1:36:-1.24836,0,-14.7413	0/1:29:20,9:20:712:9:324:-15.0728,0,-55.3252	0/0:123:123,0:123:4424:0:0:0,-37.0267,-397.67	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0679	0/0:103:103,0:103:3666:0:0:0,-31.0061,-329.857	0/0:107:105,2:105:3761:2:72:0,-26.695,-332.634	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.183	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.729	0/0:93:90,3:90:3217:3:108:0,-19.868,-281.418	0/0:62:62,0:62:2232:0:0:0,-18.6639,-200.525	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.1964	0/0:74:74,0:74:2645:0:0:0,-22.2762,-237.916	0/0:111:111,0:111:3988:0:0:0,-33.4143,-358.672	0/1:13:8,5:8:288:5:180:-9.43933,0,-22.3365	0/0:69:69,0:69:2469:0:0:0,-20.7711,-222.297	0/1:26:20,6:20:701:6:216:-8.13842,0,-55.4992	0/1:58:42,16:42:1489:16:561:-23.8565,0,-116.004	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.404	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.619	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.219	1/1:2:0,2:0:0:2:72:-5.51525,-0.60206,0	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.297	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.682	0/0:111:111,0:111:3988:0:0:0,-33.4143,-358.353	0/0:101:101,0:101:3617:0:0:0,-30.404,-325.211	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.064	0/1:46:23,23:23:828:23:824:-46.6837,0,-60.9222	0/0:94:94,0:94:3369:0:0:0,-28.2968,-302.8	0/1:33:17,16:17:582:16:576:-32.4142,0,-42.7447	0/0:73:73,0:73:2620:0:0:0,-21.9752,-235.913	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.676	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.559	0/1:85:35,50:35:1252:50:1792:-105.377,0,-87.3262	0/1:53:22,31:22:777:31:1104:-65.0111,0,-54.2046	0/0:22:22,0:22:743:0:0:0,-6.62266,-67.0095	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.179
chr06	11503866	.	G	A	168392	PASS	AB=0.512841;ABP=8.36404;AC=144;AF=0.765957;AN=188;AO=7806;CIGAR=1X;DP=9644;DPB=9644;DPRA=34.5556;EPP=16953.5;EPPR=3983.32;GTI=3;LEN=1;MEANALT=1.05376;MQM=59.8167;MQMR=53.1642;NS=94;NUMALT=1;ODDS=3.87561;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278983;QR=65481;RO=1833;RPL=0;RPP=16953.5;RPPR=3983.32;RPR=7806;RUN=1;SAF=7806;SAP=16953.5;SAR=0;SRF=1833;SRP=3983.32;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:20,13:20:716:13:468:-32.5223,0,-54.4048	1/1:146:0,146:0:0:146:5190:-467.176,-43.9504,0	0/1:276:116,160:116:4172:160:5723:-432.079,0,-290.836	1/1:226:0,226:0:0:226:8085:-727.431,-68.0328,0	0/1:86:41,45:41:1444:45:1620:-120.201,0,-103.236	0/1:71:35,36:35:1248:36:1284:-94.4885,0,-90.5459	1/1:171:3,168:3:100:168:6012:-531.844,-42.1467,0	0/1:161:65,95:65:2324:95:3401:-257.793,0,-159.79	0/1:97:47,50:47:1684:50:1800:-133.075,0,-121.036	0/1:64:38,26:38:1360:26:928:-64.5677,0,-103.143	0/1:69:21,48:21:756:48:1712:-133.547,0,-47.3774	1/1:78:0,78:0:0:78:2796:-251.878,-23.4803,0	0/1:91:56,35:56:2008:35:1252:-85.5904,0,-152.527	0/1:72:29,43:29:1040:43:1530:-115.96,0,-72.0814	1/1:63:1,62:1:36:62:2211:-195.654,-15.3666,0	0/1:57:32,25:32:1140:25:888:-63.0803,0,-85.3101	1/1:90:0,90:0:0:90:3217:-289.513,-27.0927,0	1/1:81:1,80:1:36:80:2864:-254.396,-20.7852,0	1/1:56:0,56:0:0:56:1989:-179.279,-16.8577,0	1/1:186:1,185:1:36:185:6604:-590.816,-52.3959,0	0/1:148:60,87:60:2131:87:3120:-236.461,0,-145.756	1/1:53:0,53:0:0:53:1891:-170.467,-15.9546,0	0/1:42:17,25:17:591:25:896:-68.2812,0,-40.8325	0/1:129:58,71:58:2072:71:2530:-189.118,0,-147.261	0/1:74:34,40:34:1204:40:1436:-107.251,0,-85.6878	1/1:260:0,260:0:0:260:9292:-836.234,-78.2678,0	1/1:272:0,272:0:0:272:9707:-873.569,-81.8802,0	1/1:37:0,37:0:0:37:1305:-117.748,-11.1381,0	0/1:259:127,132:127:4536:132:4712:-346.274,0,-329.681	0/1:91:45,46:45:1620:46:1644:-120.85,0,-118.041	1/1:135:0,135:0:0:135:4829:-434.761,-40.6391,0	0/1:16:5,11:5:180:11:384:-30.0782,0,-11.6842	1/1:20:1,19:1:36:19:684:-58.3038,-2.43412,0	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.23916	0/1:11:1,10:1:36:10:360:-29.433,0,-0.0762696	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:201:103,98:103:3688:98:3509:-255.482,0,-270.669	1/1:141:0,141:0:0:141:5058:-455.063,-42.4452,0	1/1:65:0,65:0:0:65:2322:-209.233,-19.567,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.0571	1/1:169:0,169:0:0:169:6055:-544.983,-50.8741,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:151:82,68:82:2940:68:2432:-173.636,0,-218.602	0/1:90:47,43:47:1675:43:1535:-111.321,0,-123.664	0/1:78:33,45:33:1176:45:1612:-121.76,0,-82.1773	0/1:80:45,35:45:1616:35:1248:-88.2723,0,-121.334	0/1:136:64,72:64:2287:72:2548:-188.541,0,-164	1/1:176:0,176:0:0:176:6296:-566.587,-52.9813,0	1/1:102:0,102:0:0:102:3625:-326.385,-30.7051,0	0/1:167:82,85:82:2925:85:3038:-223.35,0,-212.504	0/1:140:73,67:73:2624:67:2408:-174.832,0,-193.815	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3704	1/1:209:0,209:0:0:209:7481:-672.755,-62.9153,0	1/1:53:0,53:0:0:53:1884:-169.839,-15.9546,0	0/1:12:8,4:8:276:4:144:-9.70126,0,-21.4815	0/1:152:64,88:64:2288:88:3148:-237.789,0,-158.844	1/1:54:0,54:0:0:54:1932:-174.156,-16.2556,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0648	0/1:16:12,4:12:432:4:140:-8.1281,0,-34.3339	0/1:70:30,40:30:1072:40:1416:-106.544,0,-75.3784	1/1:97:1,96:1:36:96:3448:-306.926,-25.6042,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:153:1,152:1:36:152:5448:-486.836,-42.4593,0	1/1:176:0,176:0:0:176:6249:-562.366,-52.9813,0	1/1:58:0,58:0:0:58:2050:-184.769,-17.4597,0	1/1:120:0,120:0:0:120:4302:-387.352,-36.1236,0	1/1:129:0,129:0:0:129:4604:-414.251,-38.8329,0	1/1:102:1,101:1:36:101:3628:-323.111,-27.1094,0	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	1/1:102:1,101:1:36:101:3632:-323.478,-27.1085,0	1/1:93:1,92:1:27:92:3299:-294.422,-25.296,0	0/1:28:10,18:10:356:18:648:-50.223,0,-23.7758	1/1:68:0,68:0:0:68:2425:-218.492,-20.47,0	0/1:95:49,46:49:1744:46:1633:-118.657,0,-128.15	0/1:119:64,55:64:2279:55:1960:-140.624,0,-167.92	1/1:171:0,170:0:0:170:6080:-546.942,-51.1751,0	1/1:151:0,151:0:0:151:5416:-487.509,-45.4555,0	1/1:148:0,148:0:0:148:5289:-476.085,-44.5524,0	0/1:16:10,6:10:360:6:216:-14.974,0,-27.7467	1/1:205:1,204:1:36:204:7266:-650.394,-58.118,0	1/1:185:0,185:0:0:185:6587:-592.875,-55.6906,0	1/1:240:0,240:0:0:240:8556:-770.03,-72.2472,0	1/1:79:0,79:0:0:79:2828:-254.757,-23.7814,0	1/1:58:0,58:0:0:58:2071:-186.61,-17.4597,0	0/1:82:45,37:45:1595:37:1324:-94.7776,0,-118.638	1/1:155:0,155:0:0:155:5546:-499.194,-46.6597,0	0/1:39:16,22:16:572:22:788:-59.4642,0,-38.7222	1/1:73:0,73:0:0:73:2624:-236.404,-21.9752,0	1/1:96:0,96:0:0:96:3448:-310.208,-28.8989,0	1/1:58:0,58:0:0:58:2071:-186.661,-17.4597,0	0/1:113:67,46:67:2404:46:1644:-114.232,0,-180.24	0/1:79:51,28:51:1819:28:997:-66.2387,0,-139.848	1/1:129:0,129:0:0:129:4628:-416.633,-38.8329,0	1/1:121:0,121:0:0:121:4332:-390.056,-36.4246,0
chr06	11503894	.	T	G	80941.6	PASS	AB=0.480207;ABP=28.7129;AC=45;AF=0.239362;AN=188;AO=3657;CIGAR=1X;DP=19051;DPB=19051;DPRA=0.965036;EPP=7944.08;EPPR=33393.7;GTI=2;LEN=1;MEANALT=1.06897;MQM=55.8214;MQMR=59.9128;NS=94;NUMALT=1;ODDS=5.18179;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129689;QR=545731;RO=15381;RPL=1796;RPP=5.51904;RPPR=4.5668;RPR=1861;RUN=1;SAF=1796;SAP=5.51904;SAR=1861;SRF=7744;SRP=4.62666;SRR=7637;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:93:46,47:46:1628:47:1630:-118.138,0,-118.81	0/0:274:273,1:273:9737:1:36:0,-78.8839,-872.56	0/1:364:218,146:218:7747:146:5205:-357.23,0,-587.675	0/0:388:386,1:386:13645:1:36:0,-113.26,-1224.14	0/1:160:88,72:88:3118:72:2565:-181.25,0,-232.679	0/1:120:64,56:64:2269:56:1979:-141.46,0,-168.345	0/0:333:333,0:333:11813:0:0:0,-100.243,-1062.99	0/1:305:184,121:184:6503:121:4288:-292.624,0,-493.539	0/1:191:97,94:97:3467:94:3362:-244.247,0,-254.739	0/1:164:84,80:84:2962:80:2853:-207.233,0,-217.443	0/1:180:98,82:98:3481:82:2902:-206.722,0,-259.307	0/0:161:161,0:161:5710:0:0:0,-48.4658,-514.021	0/1:168:72,96:72:2566:96:3399:-253.149,0,-180.615	0/1:207:118,89:118:4123:89:3132:-219.472,0,-308.436	0/0:157:157,0:157:5544:0:0:0,-47.2617,-499.078	0/1:129:65,64:65:2312:64:2285:-166.633,0,-169.508	0/0:195:195,0:195:6925:0:0:0,-58.7008,-623.312	0/0:182:181,0:181:6458:0:0:0,-54.4864,-580.938	0/0:128:128,0:128:4550:0:0:0,-38.5318,-409.665	0/0:384:383,1:383:13638:1:36:0,-112,-1223.58	0/1:254:146,108:146:5168:108:3795:-263.665,0,-388.783	0/0:125:125,0:125:4418:0:0:0,-37.6287,-397.796	0/1:93:55,36:55:1949:36:1283:-87.9277,0,-147.931	0/1:215:108,107:108:3851:107:3791:-275.833,0,-282.065	0/1:151:93,58:93:3308:58:2055:-138.745,0,-252.474	0/0:521:520,0:520:18455:0:0:0,-156.536,-1660.09	0/0:408:408,0:408:14506:0:0:0,-122.82,-1305.29	0/0:77:75,0:75:2641:0:0:0,-22.5772,-237.577	0/1:445:237,208:237:8381:208:7412:-532.458,0,-620.339	0/1:203:107,96:107:3789:96:3394:-244.024,0,-280.101	0/0:299:298,0:298:10555:0:0:0,-89.7069,-949.512	0/1:19:13,6:13:445:6:216:-14.0198,0,-34.6558	0/0:27:26,1:26:932:1:32:0,-4.93324,-81.0043	0/1:14:7,7:7:252:7:246:-18.233,0,-18.8145	0/1:20:15,5:15:540:5:176:-9.9706,0,-42.9159	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/1:417:195,222:195:6939:222:7865:-580.892,0,-499.008	0/0:285:285,0:285:10171:0:0:0,-85.7935,-914.992	0/0:152:152,0:152:5404:0:0:0,-45.7566,-486.485	0/1:13:6,7:6:216:7:252:-19.0293,0,-15.8771	0/0:276:275,0:275:9774:0:0:0,-82.7832,-879.204	0/0:105:104,0:104:3708:0:0:0,-31.3071,-333.564	0/1:309:141,168:141:4986:168:5999:-446.027,0,-355.873	0/1:163:89,74:89:3159:74:2644:-188.827,0,-235.44	0/1:136:76,60:76:2664:60:2132:-150.913,0,-199.009	0/1:175:72,102:72:2525:102:3558:-267.19,0,-174.494	0/1:303:148,155:148:5250:155:5518:-404.515,0,-381.293	0/0:312:309,3:309:10977:3:108:0,-83.8486,-977.755	0/0:198:198,0:198:7065:0:0:0,-59.6039,-635.908	0/1:322:176,146:176:6283:146:5186:-368.875,0,-468.605	0/1:286:137,149:137:4862:149:5291:-389.726,0,-351.642	0/1:24:14,10:14:500:10:352:-24.7774,0,-38.1115	0/0:354:354,0:354:12589:0:0:0,-106.565,-1132.27	0/0:124:124,0:124:4404:0:0:0,-37.3277,-396.534	0/1:42:16,26:16:568:26:923:-70.2856,0,-38.8086	0/1:267:149,118:149:5271:118:4161:-293.172,0,-394.155	0/0:98:98,0:98:3484:0:0:0,-29.5009,-313.773	1/1:8:0,8:0:0:8:280:-25.5264,-2.40824,0	0/1:34:13,21:13:468:21:733:-55.9764,0,-32.2223	0/1:196:106,90:106:3744:90:3220:-230.297,0,-278.144	0/0:251:249,2:249:8783:2:72:0,-68.7243,-783.627	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	0/0:246:246,0:246:8719:0:0:0,-74.0534,-784.711	0/0:381:378,3:378:13404:3:108:0,-104.617,-1195.93	0/0:138:138,0:138:4917:0:0:0,-41.5421,-442.679	0/0:208:208,0:208:7380:0:0:0,-62.6142,-664.249	0/0:215:213,2:213:7592:2:72:0,-57.8847,-676.055	0/0:276:275,1:275:9811:1:36:0,-79.4886,-879.326	0/0:105:105,0:105:3721:0:0:0,-31.6081,-335.093	0/0:181:180,1:180:6347:1:36:0,-50.8899,-567.723	0/0:221:221,0:221:7839:0:0:0,-66.5276,-705.545	0/1:36:22,14:22:788:14:504:-34.7219,0,-60.4077	0/0:138:138,0:138:4873:0:0:0,-41.5421,-438.703	0/1:167:92,75:92:3258:75:2666:-189.136,0,-243.166	0/1:387:184,203:184:6514:203:7151:-526.089,0,-469.746	0/0:324:323,0:323:11491:0:0:0,-97.2327,-1033.71	0/0:272:271,1:271:9623:1:36:0,-78.2819,-862.306	0/0:257:257,0:257:9110:0:0:0,-77.3647,-819.822	0/1:43:24,19:24:864:19:680:-48.3071,0,-65.1383	0/0:305:304,1:304:10824:1:36:0,-88.221,-970.476	0/0:297:297,0:297:10579:0:0:0,-89.4059,-951.63	0/0:465:463,2:463:16451:2:72:0,-133.142,-1473.4	0/0:195:195,0:195:6883:0:0:0,-58.7008,-619.544	0/0:159:159,0:159:5617:0:0:0,-47.8638,-505.595	0/1:190:93,97:93:3301:97:3415:-249.695,0,-240.113	0/0:302:300,2:300:10570:2:72:0,-84.0855,-944.298	0/1:92:50,42:50:1768:42:1496:-105.746,0,-131.707	0/0:162:162,0:162:5699:0:0:0,-48.7669,-513.028	0/0:186:186,0:186:6616:0:0:0,-55.9916,-595.516	0/0:169:169,0:169:5915:0:0:0,-50.8741,-532.468	0/1:285:137,147:137:4833:147:5219:-381.362,0,-349.28	0/1:152:59,93:59:2070:93:3296:-250.702,0,-140.707	0/0:194:194,0:194:6934:0:0:0,-58.3998,-624.077	0/0:251:251,0:251:8924:0:0:0,-75.5585,-803.149
chr06	11504500	.	A	G	108002	PASS	AB=0.504528;ABP=3.48229;AC=146;AF=0.784946;AN=186;AO=5164;CIGAR=1X;DP=6488;DPB=6488;DPRA=0;EPP=11216.5;EPPR=2875.87;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.9882;MQMR=60;NS=93;NUMALT=1;ODDS=3.54884;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181392;QR=46900;RO=1323;RPL=0;RPP=11216.5;RPPR=2875.87;RPR=5164;RUN=1;SAF=0;SAP=11216.5;SAR=5164;SRF=0;SRP=2875.87;SRR=1323;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:28,39:28:1000:39:1365:-102.977,0,-70.1464	1/1:45:0,45:0:0:45:1574:-141.949,-13.5464,0	0/1:87:38,49:38:1364:49:1743:-130.964,0,-96.8711	1/1:117:0,117:0:0:117:4124:-371.346,-35.2205,0	0/1:42:17,25:17:608:25:900:-68.6778,0,-42.4088	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	1/1:96:0,96:0:0:96:3381:-304.504,-28.8989,0	0/1:91:37,54:37:1311:54:1901:-143.97,0,-90.8971	0/1:89:37,52:37:1279:52:1791:-134.675,0,-88.6153	0/1:54:26,28:26:924:28:995:-73.6084,0,-67.222	0/1:35:14,21:14:491:21:740:-56.3873,0,-33.9851	1/1:92:0,92:0:0:92:3135:-282.378,-27.6948,0	0/1:64:34,30:34:1215:30:1045:-75.0916,0,-90.3898	0/1:32:14,18:14:495:18:640:-48.2964,0,-35.2501	1/1:48:0,48:0:0:48:1669:-150.495,-14.4494,0	0/1:48:17,31:17:612:31:1096:-84.5005,0,-40.964	1/1:15:0,15:0:0:15:513:-46.4929,-4.51545,0	1/1:44:0,44:0:0:44:1514:-136.547,-13.2453,0	1/1:31:1,30:1:36:30:1071:-93.104,-5.73366,0	1/1:176:0,176:0:0:176:6230:-560.796,-52.9813,0	0/1:80:33,47:33:1188:47:1659:-125.514,0,-83.1462	1/1:108:0,108:0:0:108:3811:-343.187,-32.5112,0	0/1:101:58,43:58:2063:43:1532:-107.769,0,-155.537	0/1:85:46,39:46:1609:39:1391:-99.9007,0,-119.509	0/1:87:43,44:43:1495:44:1542:-112.881,0,-108.65	1/1:197:1,196:1:36:196:6885:-616.125,-55.7046,0	1/1:220:0,220:0:0:220:7765:-698.889,-66.2266,0	1/1:19:0,19:0:0:19:667:-60.3546,-5.71957,0	0/1:183:102,81:102:3638:81:2871:-203.539,0,-272.536	0/1:87:53,34:53:1887:34:1194:-81.5731,0,-143.918	1/1:99:0,99:0:0:99:3418:-307.832,-29.802,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:19:0,19:0:0:19:656:-59.3594,-5.71957,0	.:.:.:.:.:.:.:.	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:11:0,11:0:0:11:379:-34.4406,-3.31133,0	0/1:153:83,70:83:2953:70:2450:-174.694,0,-219.945	1/1:120:0,120:0:0:120:4203:-378.452,-36.1236,0	1/1:37:0,37:0:0:37:1308:-118.022,-11.1381,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:58:0,58:0:0:58:2043:-184.139,-17.4597,0	1/1:32:0,32:0:0:32:1115:-100.657,-9.63296,0	0/1:110:43,67:43:1540:67:2371:-180.534,0,-105.78	0/1:46:27,19:27:955:19:644:-44.4285,0,-72.4175	0/1:41:19,22:19:668:22:759:-56.2827,0,-48.1034	0/1:114:70,44:70:2470:44:1542:-104.75,0,-188.234	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	1/1:92:0,92:0:0:92:3233:-291.192,-27.6948,0	1/1:80:0,80:0:0:80:2806:-252.781,-24.0824,0	0/1:71:41,30:41:1445:30:1064:-74.698,0,-108.971	0/1:153:77,76:77:2707:76:2675:-194.936,0,-197.813	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	1/1:83:0,83:0:0:83:2950:-265.734,-24.9855,0	1/1:79:0,79:0:0:79:2796:-251.879,-23.7814,0	0/1:8:3,5:3:100:5:180:-14.1438,0,-6.9222	0/1:143:59,84:59:2089:84:2946:-222.222,0,-145.231	1/1:38:0,38:0:0:38:1308:-118.014,-11.4391,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:76:42,34:42:1500:34:1174:-83.0814,0,-112.416	1/1:65:0,65:0:0:65:2277:-205.189,-19.567,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:127:0,127:0:0:127:4491:-404.361,-38.2308,0	1/1:146:2,144:2:72:144:5107:-452.939,-37.1137,0	1/1:42:0,42:0:0:42:1485:-133.944,-12.6433,0	1/1:54:0,54:0:0:54:1898:-171.095,-16.2556,0	1/1:112:1,110:1:32:110:3894:-347.435,-30.5549,0	1/1:110:2,108:2:72:108:3772:-332.845,-26.2766,0	1/1:20:0,20:0:0:20:672:-60.7933,-6.0206,0	1/1:17:0,17:0:0:17:595:-53.8767,-5.11751,0	1/1:41:0,41:0:0:41:1432:-129.175,-12.3422,0	0/1:17:7,10:7:248:10:352:-26.9007,0,-17.5467	1/1:100:0,100:0:0:100:3505:-315.662,-30.103,0	0/1:74:32,42:32:1132:42:1474:-110.677,0,-79.9124	0/1:159:84,75:84:2981:75:2618:-188.003,0,-220.659	1/1:86:0,86:0:0:86:3006:-270.77,-25.8886,0	1/1:98:2,96:2:68:96:3405:-300.206,-23.0432,0	1/1:52:0,52:0:0:52:1824:-164.438,-15.6536,0	0/1:27:13,14:13:464:14:500:-37.2084,0,-33.9697	1/1:59:0,59:0:0:59:2088:-188.19,-17.7608,0	1/1:70:0,70:0:0:70:2478:-223.273,-21.0721,0	1/1:147:0,147:0:0:147:5118:-460.766,-44.2514,0	1/1:63:0,63:0:0:63:2239:-201.773,-18.9649,0	1/1:52:0,52:0:0:52:1836:-165.52,-15.6536,0	0/1:37:18,19:18:630:19:653:-47.9512,0,-45.8865	1/1:127:1,126:1:36:126:4411:-393.566,-34.6325,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	1/1:66:0,66:0:0:66:2323:-209.331,-19.868,0	1/1:61:0,61:0:0:61:2125:-191.516,-18.3628,0	1/1:23:0,23:0:0:23:791:-71.506,-6.92369,0	0/1:54:31,23:31:1101:23:787:-54.8868,0,-83.1427	0/1:53:33,20:33:1162:20:675:-45.1087,0,-88.9307	1/1:48:0,48:0:0:48:1710:-154.185,-14.4494,0	1/1:69:0,69:0:0:69:2399:-216.167,-20.7711,0
chr06	11513736	.	C	T	16608.7	PASS	AB=0.46547;ABP=25.5048;AC=42;AF=0.230769;AN=182;AO=1022;CIGAR=1X;DP=5539;DPB=5539;DPRA=0.80801;EPP=2187.65;EPPR=9591.26;GTI=4;LEN=1;MEANALT=1;MQM=59.9775;MQMR=59.9838;NS=91;NUMALT=1;ODDS=2.82353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36566;QR=161063;RO=4515;RPL=4;RPP=2187.65;RPPR=9591.26;RPR=1018;RUN=1;SAF=1022;SAP=2222.26;SAR=0;SRF=4515;SRP=9807.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/1:42:21,21:21:748:21:743:-54.5501,0,-55.002	0/0:133:133,0:133:4756:0:0:0,-40.037,-428.198	0/1:48:32,16:32:1136:16:572:-37.318,0,-88.0995	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/0:76:76,0:76:2703:0:0:0,-22.8783,-243.514	0/1:88:46,42:46:1631:42:1512:-109.884,0,-120.587	0/1:83:54,29:54:1907:29:1013:-66.4934,0,-146.922	0/1:78:46,32:46:1635:32:1138:-79.2475,0,-123.958	0/1:38:18,20:18:635:20:720:-53.6896,0,-46.0378	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:40:22,18:22:788:18:648:-46.6107,0,-59.2036	0/1:49:24,25:24:864:25:900:-66.5705,0,-63.3321	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:36:18,18:18:648:18:639:-47.0012,0,-47.8148	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:44:44,0:44:1576:0:0:0,-13.2453,-141.703	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.665	0/1:87:38,49:38:1351:49:1764:-132.854,0,-95.7	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:48:30,18:30:1080:18:648:-44.2024,0,-83.0638	0/1:55:24,31:24:860:31:1098:-82.572,0,-61.1652	0/1:37:17,20:17:604:20:720:-53.9907,0,-43.5525	0/0:189:189,0:189:6738:0:0:0,-56.8947,-606.497	0/0:142:142,0:142:5064:0:0:0,-42.7463,-455.904	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.3921	0/1:134:75,59:75:2650:59:2102:-149.11,0,-198.409	0/1:116:59,57:59:2116:57:2048:-149.672,0,-155.789	0/0:99:99,0:99:3531:0:0:0,-29.802,-318	.:.:.:.:.:.:.:.	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:146:70,76:70:2496:76:2723:-201.362,0,-180.943	0/0:141:141,0:141:5025:0:0:0,-42.4452,-452.397	0/0:39:38,1:38:1356:1:36:0,-8.14189,-118.742	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:105:105,0:105:3686:0:0:0,-31.6081,-331.943	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:68:39,29:39:1396:29:1044:-73.8048,0,-105.469	0/1:60:30,30:30:1080:30:1076:-79.0911,0,-79.4515	0/1:48:23,25:23:820:25:896:-66.5109,0,-59.6731	0/1:65:33,32:33:1184:32:1152:-84.4232,0,-87.3014	0/1:66:31,35:31:1112:35:1248:-92.7569,0,-80.5234	0/0:117:117,0:117:4175:0:0:0,-35.2205,-375.933	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:99:48,51:48:1708:51:1810:-133.378,0,-124.204	0/1:66:35,31:35:1248:31:1099:-79.3515,0,-92.7569	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:77:43,34:43:1502:34:1216:-86.5673,0,-112.292	0/0:27:26,1:26:932:1:36:0,-4.52953,-80.6006	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:55:36,19:36:1288:19:680:-44.9725,0,-99.6669	0/0:61:61,0:61:2170:0:0:0,-18.3628,-195.565	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:180:179,0:179:6382:0:0:0,-53.8844,-574.112	0/0:79:78,1:78:2804:1:36:0,-20.1831,-249.001	0/0:69:68,0:68:2423:0:0:0,-20.47,-217.966	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/0:120:118,2:118:4190:2:72:0,-29.2869,-370.447	0/0:52:51,1:51:1815:1:36:0,-12.0553,-160.032	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:37:37,0:37:1304:0:0:0,-11.1381,-117.661	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:14:8,6:8:280:6:216:-15.5761,0,-21.3249	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:65:41,24:41:1476:24:854:-57.6129,0,-113.569	0/1:93:61,32:61:2176:32:1143:-75.1829,0,-168.111	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.439	0/0:93:93,0:93:3324:0:0:0,-27.9958,-299.378	0/1:8:5,3:5:172:3:108:-7.66693,0,-13.4097	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/0:82:82,0:82:2923:0:0:0,-24.6845,-263.305	0/0:73:72,1:72:2584:1:36:0,-18.3769,-229.211	0/0:75:75,0:75:2663:0:0:0,-22.5772,-239.916	0/0:39:39,0:39:1382:0:0:0,-11.7402,-124.677	0/1:75:42,33:42:1504:33:1188:-84.6513,0,-113.077	0/0:120:120,0:120:4275:0:0:0,-36.1236,-384.93	0/1:42:23,19:23:828:19:680:-48.8859,0,-62.2009	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:39:19,20:19:667:20:720:-53.3886,0,-48.6145	0/1:50:22,28:22:783:28:1008:-75.9849,0,-55.7414	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.754
chr06	11861971	.	T	C	28821.2	PASS	AB=0.50823;ABP=5.01199;AC=51;AF=0.271277;AN=188;AO=1745;CIGAR=1X;DP=7347;DPB=7347;DPRA=1.19154;EPP=3792.23;EPPR=12163.3;GTI=3;LEN=1;MEANALT=1.01695;MQM=59.6338;MQMR=59.6025;NS=94;NUMALT=1;ODDS=1.11261;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61938;QR=200480;RO=5600;RPL=0;RPP=3792.23;RPPR=12163.3;RPR=1745;RUN=1;SAF=0;SAP=3792.23;SAR=1745;SRF=0;SRP=12163.3;SRR=5600;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:43,18:43:1535:18:648:-40.2891,0,-120.044	0/1:96:49,47:49:1760:47:1675:-121.92,0,-129.768	0/1:101:62,39:62:2220:39:1381:-94.1582,0,-169.635	0/0:132:131,1:131:4704:1:36:0,-36.1377,-419.906	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.624	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.823	0/1:138:66,72:66:2372:72:2571:-190.034,0,-172.126	0/1:89:50,39:50:1792:39:1388:-98.4158,0,-134.764	0/1:104:37,67:37:1332:67:2378:-182.967,0,-88.8725	0/1:34:16,18:16:568:18:626:-46.4283,0,-41.2145	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.172	0/1:41:17,24:17:608:24:847:-64.1983,0,-42.7098	0/1:49:17,32:17:612:32:1123:-86.6247,0,-40.6621	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1023	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1222	0/1:37:13,24:13:468:24:847:-65.4024,0,-31.3133	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.4953	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4301	0/1:328:140,188:140:5024:188:6678:-502.342,0,-353.539	0/1:100:53,47:53:1896:47:1665:-119.918,0,-140.669	0/0:116:116,0:116:4159:0:0:0,-34.9195,-374.479	0/1:45:23,22:23:828:22:768:-55.8913,0,-61.2954	0/1:127:62,65:62:2216:65:2304:-169.292,0,-161.457	0/1:86:47,39:47:1688:39:1392:-99.6904,0,-126.303	0/0:334:333,1:333:11897:1:36:0,-96.9457,-1066.9	0/0:187:187,0:187:6683:0:0:0,-56.2926,-601.513	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:217:123,94:123:4416:94:3345:-235.449,0,-332.269	0/1:113:57,56:57:2036:56:1991:-145.391,0,-149.155	0/1:81:30,51:30:1068:51:1817:-139.409,0,-72.0417	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9735	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.473	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:150:70,80:70:2516:80:2834:-210.135,0,-181.531	0/0:202:201,1:201:7204:1:36:0,-57.2124,-644.742	0/1:31:14,17:14:500:17:612:-46.0733,0,-35.996	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:154:153,1:153:5449:1:36:0,-42.7629,-486.314	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.694	0/1:96:59,37:59:2112:37:1297:-87.9996,0,-161.434	0/1:37:14,23:14:504:23:820:-62.9844,0,-34.56	0/1:39:16,23:16:576:23:816:-62.0215,0,-40.4325	0/0:87:87,0:87:3115:0:0:0,-26.1896,-280.538	0/1:55:28,27:28:1000:27:955:-69.7082,0,-73.7516	0/0:155:154,1:154:5524:1:36:0,-43.0614,-493.482	0/0:115:115,0:115:4119:0:0:0,-34.6184,-370.889	0/1:75:28,47:28:1004:47:1676:-128.55,0,-68.0963	0/0:187:187,0:187:6698:0:0:0,-56.2926,-602.88	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:138:138,0:138:4956:0:0:0,-41.5421,-445.869	0/1:34:19,15:19:684:15:532:-37.9781,0,-51.6553	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:84:42,41:42:1489:41:1451:-105.531,0,-108.945	0/0:52:52,0:52:1853:0:0:0,-15.6536,-166.952	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7191	0/1:63:33,30:33:1176:30:1065:-77.1958,0,-87.0415	0/0:105:102,3:102:3668:3:108:0,-21.5354,-320.24	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:157:157,0:157:5640:0:0:0,-47.2617,-507.658	0/0:188:187,1:187:6696:1:36:0,-52.9954,-599.087	0/1:71:38,33:38:1347:33:1188:-85.8462,0,-100.134	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.085	0/0:90:89,0:89:3184:0:0:0,-26.7917,-286.413	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.261	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2166	0/0:62:61,1:61:2156:1:36:0,-15.0851,-190.373	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.89	0/1:26:16,10:16:576:10:351:-24.0999,0,-44.3459	0/1:143:89,54:89:3188:54:1909:-129.029,0,-243.903	0/1:56:22,34:22:792:34:1194:-90.9053,0,-54.7389	0/1:136:71,65:71:2540:65:2301:-166.385,0,-186.334	0/0:141:141,0:141:5043:0:0:0,-42.4452,-453.979	0/0:98:97,1:97:3429:1:36:0,-25.9117,-304.952	0/0:69:68,1:68:2431:1:36:0,-17.1728,-215.447	0/1:12:7,5:7:248:5:176:-12.5727,0,-19.0518	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.096	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.39	0/0:132:132,0:132:4699:0:0:0,-39.736,-423	0/1:72:36,36:36:1284:36:1271:-93.0098,0,-94.068	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.977	0/1:48:24,24:24:864:24:846:-61.9765,0,-63.6261	0/1:91:43,48:43:1544:48:1710:-126.787,0,-111.852	0/1:35:22,13:22:788:13:464:-31.5532,0,-60.6842	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.947	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.935	0/1:25:9,16:9:324:16:572:-44.2877,0,-21.9801	0/1:64:21,43:21:752:43:1531:-118.788,0,-48.7403	0/1:49:14,35:14:504:35:1243:-97.3904,0,-30.9299	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.065	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.172
chr06	11862004	.	A	C	118568	PASS	AB=0.483777;ABP=10.831;AC=137;AF=0.728723;AN=188;AO=5573;CIGAR=1X;DP=7357;DPB=7357;DPRA=39.962;EPP=12000.6;EPPR=3816.29;GTI=4;LEN=1;MEANALT=1.04348;MQM=59.6069;MQMR=59.6674;NS=94;NUMALT=1;ODDS=0.476844;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199304;QR=63845;RO=1780;RPL=5561;RPP=12000.6;RPPR=3816.29;RPR=12;RUN=1;SAF=0;SAP=12104.6;SAR=5573;SRF=0;SRP=3868.23;SRR=1780;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:16,42:16:576:42:1512:-118.888,0,-34.7152	0/1:99:51,48:51:1820:48:1707:-124.067,0,-134.061	0/1:102:41,61:41:1472:61:2165:-164.386,0,-102.047	1/1:135:1,134:1:32:134:4797:-428.671,-37.4397,0	1/1:58:0,58:0:0:58:2084:-187.821,-17.4597,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:57:0,57:0:0:57:2040:-183.82,-17.1587,0	0/1:140:75,65:75:2700:65:2331:-167.586,0,-201.024	0/1:94:43,51:43:1514:51:1832:-136.864,0,-108.244	0/1:103:66,37:66:2372:37:1332:-89.1735,0,-182.729	0/1:34:19,15:19:684:15:540:-38.6992,0,-51.6553	1/1:37:0,37:0:0:37:1320:-119.091,-11.1381,0	0/1:41:24,17:24:864:17:604:-42.3484,0,-65.7322	0/1:49:32,17:32:1148:17:608:-40.3006,0,-88.8794	1/1:29:0,29:0:0:29:1040:-93.912,-8.72987,0	0/1:31:18,13:18:648:13:460:-32.4012,0,-49.32	0/1:37:24,13:24:864:13:468:-31.3133,0,-66.9363	1/1:27:0,27:0:0:27:968:-87.4292,-8.12781,0	1/1:23:0,23:0:0:23:828:-74.7909,-6.92369,0	0/1:331:191,140:191:6856:140:5016:-351.918,0,-517.445	0/1:100:47,53:47:1688:53:1900:-141.029,0,-121.984	1/1:115:0,115:0:0:115:4132:-372.05,-34.6185,0	0/1:46:23,23:23:824:23:809:-59.2786,0,-60.6359	0/1:130:66,64:66:2364:64:2304:-168.451,0,-173.793	0/1:91:41,50:41:1476:50:1788:-133.79,0,-105.742	1/1:333:2,331:2:72:331:11800:-1054.99,-93.4063,0	1/1:181:1,180:1:36:180:6456:-577.495,-50.8882,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:218:94,124:94:3375:124:4436:-333.775,0,-238.335	0/1:111:54,57:54:1925:57:2005:-147.264,0,-140.088	0/1:80:51,29:51:1832:29:1040:-69.8264,0,-141.06	1/1:11:0,11:0:0:11:392:-35.6108,-3.31133,0	1/1:26:0,26:0:0:26:928:-83.8282,-7.82678,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:4:2,2:2:68:2:68:-5.25359,0,-5.25359	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:152:82,70:82:2936:70:2516:-180.929,0,-218.708	1/1:198:1,197:1:36:197:7054:-631.255,-56.0083,0	0/1:31:17,14:17:612:14:500:-35.996,0,-46.0733	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:152:1,151:1:36:151:5408:-482.962,-42.1609,0	1/1:37:0,37:0:0:37:1332:-120.173,-11.1381,0	0/1:96:36,60:36:1287:60:2144:-164.309,0,-87.0995	0/1:38:24,14:24:860:14:504:-34.259,0,-66.2827	0/1:42:28,14:28:1004:14:504:-33.0525,0,-78.0042	1/1:86:0,86:0:0:86:3088:-278.109,-25.8886,0	0/1:54:27,27:27:972:27:972:-71.5423,0,-71.5423	1/1:152:1,151:1:36:151:5407:-483.036,-42.1583,0	1/1:122:0,121:0:0:121:4324:-388.967,-36.4246,0	0/1:77:49,28:49:1760:28:989:-66.1404,0,-135.418	1/1:185:0,185:0:0:185:6616:-595.51,-55.6906,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:137:0,137:0:0:137:4904:-441.2,-41.2411,0	0/1:36:16,20:16:572:20:716:-53.9297,0,-40.9763	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:81:42,39:42:1504:39:1383:-100.368,0,-111.265	1/1:55:0,55:0:0:55:1976:-178.105,-16.5567,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:26:0,26:0:0:26:935:-84.4107,-7.82678,0	0/1:61:30,31:30:1080:31:1110:-81.8019,0,-79.1504	1/1:104:3,101:3:108:101:3636:-317.361,-21.2344,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:156:0,156:0:0:156:5587:-502.929,-46.9607,0	1/1:183:1,182:1:36:182:6488:-580.38,-51.4902,0	0/1:75:34,41:34:1220:41:1460:-109.089,0,-87.5203	1/1:47:0,47:0:0:47:1661:-149.771,-14.1484,0	1/1:93:0,93:0:0:93:3318:-298.823,-27.9958,0	1/1:73:0,73:0:0:73:2601:-234.32,-21.9752,0	1/1:14:0,14:0:0:14:500:-45.326,-4.21442,0	1/1:60:1,59:1:36:59:2120:-187.134,-14.483,0	1/1:85:0,85:0:0:85:3039:-273.703,-25.5876,0	0/1:25:9,16:9:324:16:572:-44.2853,0,-21.9801	0/1:139:54,84:54:1940:84:2993:-227.649,0,-132.967	0/1:58:35,23:35:1260:23:820:-56.6542,0,-96.2376	0/1:135:65,69:65:2332:69:2476:-181.756,0,-169.421	1/1:142:0,142:0:0:142:5083:-457.576,-42.7463,0	1/1:99:0,99:0:0:99:3540:-318.52,-29.802,0	1/1:68:1,67:1:36:67:2408:-213.378,-16.8718,0	0/1:12:5,7:5:176:7:237:-18.0467,0,-12.5727	1/1:56:0,56:0:0:56:2008:-180.975,-16.8577,0	1/1:85:0,85:0:0:85:3033:-273.157,-25.5876,0	1/1:134:0,134:0:0:134:4785:-430.665,-40.338,0	0/1:69:36,33:36:1296:33:1153:-83.2969,0,-96.1636	1/1:35:0,35:0:0:35:1247:-112.525,-10.5361,0	0/1:46:24,21:24:860:21:756:-54.4564,0,-63.7826	0/1:91:50,41:50:1788:41:1453:-103.666,0,-133.804	0/1:36:14,22:14:504:22:792:-60.744,0,-34.8528	1/1:44:0,44:0:0:44:1580:-142.483,-13.2453,0	1/1:50:0,50:0:0:50:1780:-160.454,-15.0515,0	0/1:26:17,9:17:612:9:316:-20.9521,0,-47.5867	0/1:63:44,19:44:1580:19:684:-42.9254,0,-123.498	0/1:50:35,15:35:1256:15:540:-33.8674,0,-98.2608	1/1:85:0,85:0:0:85:3037:-273.553,-25.5876,0	1/1:59:0,59:0:0:59:2101:-189.347,-17.7608,0
chr06	11862132	.	ACC	ACT,ACG	108328	PASS	AB=0.52438,0.471771;ABP=15.0806,19.1932;AC=136,50;AF=0.731183,0.268817;AN=186;AO=3900,1118;CIGAR=2M1X,2M1X;DP=5037;DPB=5037;DPRA=20.9542,0.898396;EPP=8471.75,2430.72;EPPR=5.18177;GTI=2;LEN=1,1;MEANALT=1.7,2.09804;MQM=59.9818,59.7934;MQMR=60;NS=93;NUMALT=2;ODDS=0.143154;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=139775,39722;QR=36;RO=1;RPL=3900,1118;RPP=8471.75,2430.72;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8471.75,2430.72;SAR=3900,1118;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:29:0,16,13:0:0:16,13:576,468:-85.5416,-38.5429,-33.7264,-47.3585,0,-43.4451	1/2:48:0,24,24:0:0:24,24:864,852:-140.276,-69.7757,-62.5509,-70.8578,0,-63.6331	1/2:45:0,25,19:0:0:25,19:892,664:-126.727,-54.006,-46.4802,-72.7146,0,-66.995	1/1:115:0,115,0:0:0:115,0:4121,0:-371.072,-34.6185,0,-371.072,-34.6185,-371.072	1/1:43:0,42,1:0:0:42,1:1508,36:-135.655,-12.6433,0,-132.717,-9.34602,-132.416	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/1:86:0,86,0:0:0:86,0:3096,0:-278.866,-25.8886,0,-278.866,-25.8886,-278.866	1/2:72:0,40,32:0:0:40,32:1432,1144:-210.409,-93.6299,-81.5887,-117.136,0,-107.503	1/2:100:0,47,53:0:0:47,53:1688,1883:-291.484,-153.79,-139.641,-138.051,0,-122.097	1/2:48:0,21,27:0:0:21,27:756,972:-141.356,-79.6701,-73.3485,-62.0456,0,-53.9178	1/2:29:0,18,11:0:0:18,11:648,396:-85.5449,-32.6714,-27.2529,-53.2333,0,-49.922	1/1:70:0,69,0:0:0:69,0:2480,0:-223.093,-20.7711,0,-223.093,-20.7711,-223.093	1/2:67:0,36,30:0:0:36,30:1296,1076:-193.526,-87.7783,-76.9413,-105.767,0,-96.7358	1/2:26:0,9,17:0:0:9,17:324,591:-74.8354,-48.3944,-45.6851,-26.7966,0,-21.6791	1/1:48:0,48,0:0:0:48,0:1724,0:-155.445,-14.4494,0,-155.445,-14.4494,-155.445	1/2:30:0,16,14:0:0:16,14:572,496:-87.3978,-40.7565,-35.94,-46.9969,0,-42.7825	1/2:18:0,9,9:0:0:9,9:324,324:-53.2333,-26.7966,-24.0873,-26.7966,0,-24.0873	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/2:91:0,55,36:0:0:55,36:1976,1267:-264.261,-103.057,-86.5002,-161.558,0,-150.721	1/2:73:0,43,29:0:0:43,29:1540,1036:-210.056,-84.4643,-71.52,-125.589,0,-116.859	1/1:72:0,72,0:0:0:72,0:2569,0:-231.458,-21.6742,0,-231.458,-21.6742,-231.458	1/2:59:0,41,18:0:0:41,18:1476,640:-172.94,-52.5027,-40.1605,-120.794,0,-115.375	1/2:18:0,6,12:0:0:6,12:212,420:-51.7882,-34.5217,-32.7155,-17.6186,0,-14.0063	1/2:56:0,28,28:0:0:28,28:1008,996:-163.776,-81.526,-73.0972,-82.6075,0,-74.1787	1/1:123:0,123,0:0:0:123,0:4393,0:-395.542,-37.0267,0,-395.542,-37.0267,-395.542	1/1:140:0,140,0:0:0:140,0:5021,0:-452.034,-42.1442,0,-452.034,-42.1442,-452.034	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:140:0,67,73:0:0:67,73:2389,2588:-405.928,-211.187,-191.018,-195.097,0,-173.122	1/2:60:0,31,29:0:0:31,29:1112,1024:-174.442,-83.7384,-74.4065,-91.0594,0,-82.3295	1/2:47:0,30,17:0:0:30,17:1080,600:-137.339,-49.2117,-40.1808,-88.4823,0,-83.3648	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:22:0,22,0:0:0:22,0:773,0:-69.8895,-6.62266,0,-69.8895,-6.62266,-69.8895	.:.:.:.:.:.:.:.	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/2:160:0,89,70:0:0:89,70:3192,2482:-462.553,-202.198,-175.406,-260.352,0,-239.28	1/1:88:0,86,2:0:0:86,2:3069,72:-276.067,-25.8886,0,-270.192,-19.6539,-269.59	1/2:52:0,26,26:0:0:26,26:932,928:-152.023,-76.0081,-68.1813,-76.3721,0,-68.5453	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:71:0,71,0:0:0:71,0:2539,0:-228.76,-21.3731,0,-228.76,-21.3731,-228.76	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:86:0,45,41:0:0:45,41:1616,1460:-251.177,-119.35,-105.804,-132.184,0,-119.841	1/2:28:0,13,13:0:0:13,13:464,456:-74.9391,-37.1088,-33.1954,-37.8336,0,-33.9202	1/2:59:0,22,37:0:0:22,37:788,1289:-169.438,-105.17,-98.5478,-64.6221,0,-53.484	1/1:143:1,142,0:1:36:142,0:5062,0:-452.127,-39.449,0,-452.428,-42.7463,-455.365	1/2:61:0,29,32:0:0:29,32:1044,1144:-178.818,-93.6319,-84.902,-85.5449,0,-75.912	1/1:62:0,61,0:0:0:61,0:2192,0:-197.236,-18.3628,0,-197.236,-18.3628,-197.236	1/1:81:0,81,0:0:0:81,0:2908,0:-261.955,-24.3834,0,-261.955,-24.3834,-261.955	1/2:43:0,26,17:0:0:26,17:932,608:-125.945,-49.9312,-42.1044,-76.3721,0,-71.2546	1/1:109:0,109,0:0:0:109,0:3909,0:-352.001,-32.8123,0,-352.001,-32.8123,-352.001	2/2:6:0,0,6:0:0:0,6:0,212:-19.4248,-19.4248,-19.4248,-1.80618,-1.80618,0	1/1:86:0,85,0:0:0:85,0:3052,0:-274.628,-25.5876,0,-274.628,-25.5876,-274.628	1/2:31:0,15,16:0:0:15,16:540,564:-90.3374,-46.2725,-41.757,-44.4211,0,-39.6046	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/2:61:0,32,29:0:0:32,29:1152,1040:-179.183,-85.1845,-75.5515,-94.3572,0,-85.6273	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.9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chr06	12248403	.	G	A	196566	PASS	AB=0.374942;ABP=1165.29;AC=138;AF=0.734043;AN=188;AO=9477;CIGAR=1X;DP=14858;DPB=14858;DPRA=15.9656;EPP=19910.1;EPPR=11540.5;GTI=8;LEN=1;MEANALT=1.04301;MQM=53.8744;MQMR=56.4785;NS=94;NUMALT=1;ODDS=1.67371;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=338702;QR=190838;RO=5377;RPL=9366;RPP=19629.2;RPPR=309.383;RPR=111;RUN=1;SAF=9410;SAP=20004.2;SAR=67;SRF=3130;SRP=317.883;SRR=2247;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:34,29:34:1220:29:1044:-74.3143,0,-91.0782	0/1:289:189,100:189:6730:100:3528:-228.467,0,-517.859	0/1:280:184,96:184:6567:96:3440:-223.364,0,-505.359	1/1:309:1,308:1:36:308:11039:-987.176,-89.42,0	1/1:56:1,55:1:36:55:1976:-173.699,-13.2663,0	1/1:84:0,84:0:0:84:3008:-267.59,-25.2865,0	1/1:294:3,291:3:108:291:10414:-924.937,-78.4277,0	0/1:275:167,108:167:5913:108:3859:-261.612,0,-447.306	0/1:201:106,95:106:3744:95:3404:-244.008,0,-276.437	0/1:202:118,84:118:4223:84:2978:-206.378,0,-319.235	0/1:112:61,50:61:2172:50:1779:-126.424,0,-161.747	1/1:91:0,91:0:0:91:3259:-291.963,-27.3937,0	0/1:128:92,36:92:3270:36:1286:-76.7844,0,-254.505	0/1:201:124,77:124:4365:77:2761:-187.279,0,-331.959	1/1:83:0,83:0:0:83:2976:-267.514,-24.9855,0	0/1:110:71,39:71:2509:39:1356:-89.0096,0,-192.699	0/1:122:86,36:86:2979:36:1279:-77.945,0,-230.941	1/1:82:0,81:0:0:81:2887:-257.157,-24.3834,0	1/1:69:0,69:0:0:69:2475:-221.069,-20.7711,0	0/1:507:305,202:305:10809:202:7256:-498.999,0,-818.419	0/1:408:258,150:258:9158:150:5371:-357.696,0,-700.413	1/1:122:0,122:0:0:122:4380:-393.013,-36.7257,0	0/1:170:88,82:88:3147:82:2940:-212.626,0,-231.856	0/1:225:120,105:120:4282:105:3772:-270.783,0,-317.571	0/1:127:92,35:92:3270:35:1232:-71.9865,0,-255.664	1/1:347:2,345:2:72:345:12329:-1100.6,-97.6207,0	1/1:332:0,332:0:0:332:11881:-1065.92,-99.942,0	1/1:40:0,40:0:0:40:1424:-128.033,-12.0412,0	0/1:510:325,185:325:11585:185:6615:-441.26,0,-887.561	0/1:282:180,102:180:6373:102:3644:-241.073,0,-487.95	0/1:248:169,78:169:5992:78:2757:-173.305,0,-463.034	1/1:9:0,9:0:0:9:320:-29.0941,-2.70927,0	1/1:21:0,21:0:0:21:741:-66.9155,-6.32163,0	0/1:9:8,1:8:284:1:36:-0.879959,0,-22.5766	0/1:10:4,6:4:140:6:205:-15.6227,0,-9.93428	1/1:9:0,9:0:0:9:324:-29.112,-2.70927,0	0/1:329:212,117:212:7539:117:4174:-276.381,0,-577.477	1/1:143:0,143:0:0:143:5111:-459.067,-43.0473,0	0/1:144:90,54:90:3186:54:1915:-128.645,0,-243.26	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7242	1/1:188:1,187:1:36:187:6673:-593.042,-52.9954,0	1/1:36:0,36:0:0:36:1285:-115.093,-10.8371,0	0/1:251:161,90:161:5734:90:3214:-212.349,0,-439.728	0/1:174:118,56:118:4202:56:2002:-127.601,0,-325.338	0/1:110:75,35:75:2638:35:1238:-78.4098,0,-204.277	1/1:171:0,171:0:0:171:6105:-548.027,-51.4761,0	0/1:238:155,83:155:5497:83:2975:-193.997,0,-421.58	1/1:221:1,220:1:36:220:7887:-701.704,-62.9362,0	1/1:135:0,135:0:0:135:4824:-433.208,-40.6391,0	0/1:311:187,124:187:6635:124:4431:-304.473,0,-502.692	1/1:259:0,259:0:0:259:9268:-830.932,-77.9668,0	0/1:15:6,9:6:216:9:324:-24.9668,0,-15.2499	1/1:181:0,181:0:0:181:6484:-581.335,-54.4864,0	0/1:99:52,47:52:1849:47:1664:-119.853,0,-136.654	0/1:13:10,3:10:356:3:108:-6.13645,0,-28.4197	0/1:248:167,81:167:5900:81:2892:-185.174,0,-455.354	1/1:94:0,94:0:0:94:3372:-302.595,-28.2968,0	0/1:10:8,2:8:279:2:72:-3.82451,0,-22.4132	1/1:25:0,25:0:0:25:892:-80.3231,-7.52575,0	0/1:159:113,46:113:4035:46:1644:-99.7331,0,-313.608	1/1:110:2,108:2:72:108:3871:-341.123,-26.2896,0	0/1:11:6,5:6:216:5:180:-13.2265,0,-16.4478	1/1:233:0,233:0:0:233:8359:-750.858,-70.14,0	1/1:201:3,197:3:99:197:6993:-618.838,-51.3216,0	0/1:85:43,42:43:1515:42:1502:-109.368,0,-110.776	1/1:116:0,116:0:0:116:4127:-369.548,-34.9195,0	1/1:203:2,201:2:72:201:7165:-635.798,-54.2789,0	1/1:134:1,133:1:36:133:4758:-423.49,-36.7397,0	1/1:33:0,33:0:0:33:1169:-105.246,-9.93399,0	1/1:88:0,88:0:0:88:3156:-282.607,-26.4906,0	1/1:98:0,98:0:0:98:3507:-314.771,-29.5009,0	0/1:35:9,26:9:324:26:927:-72.6497,0,-18.9511	0/1:170:97,73:97:3452:73:2614:-181.896,0,-258.206	0/1:135:77,58:77:2740:58:2071:-144.997,0,-205.964	0/1:565:307,258:307:10873:258:9211:-656.605,0,-806.507	1/1:175:2,173:2:68:173:6187:-548.994,-46.2291,0	1/1:99:0,99:0:0:99:3512:-315.114,-29.802,0	1/1:103:0,103:0:0:103:3688:-330.259,-31.0061,0	0/1:9:8,1:8:284:1:36:-0.879959,0,-23.1628	1/1:167:0,167:0:0:167:5970:-535.783,-50.272,0	1/1:159:0,159:0:0:159:5690:-508.355,-47.8638,0	1/1:428:0,428:0:0:428:15331:-1374.93,-128.841,0	0/1:172:124,48:124:4422:48:1716:-102.565,0,-345.851	1/1:85:0,85:0:0:85:3031:-272.805,-25.5876,0	0/1:135:84,51:84:2967:51:1807:-122.09,0,-225.908	0/1:228:160,68:160:5658:68:2435:-149.031,0,-438.86	0/1:71:49,22:49:1743:22:775:-48.5408,0,-135.623	1/1:79:1,78:1:27:78:2804:-248.441,-21.0816,0	1/1:100:0,100:0:0:100:3582:-319.976,-30.103,0	0/1:87:49,38:49:1735:38:1357:-95.9617,0,-130.094	0/1:149:100,49:100:3545:49:1748:-111.516,0,-273.386	0/1:124:98,26:98:3472:26:919:-45.6391,0,-274.69	1/1:145:1,144:1:36:144:5149:-458.205,-40.0579,0	1/1:135:0,135:0:0:135:4826:-432.805,-40.6391,0
chr06	12248427	.	A	G	39199	PASS	AB=0.520964;ABP=19.4892;AC=47;AF=0.25;AN=188;AO=2257;CIGAR=1X;DP=9198;DPB=9198;DPRA=1.04707;EPP=4817.55;EPPR=14854.5;GTI=0;LEN=1;MEANALT=1.01852;MQM=52.296;MQMR=57.1546;NS=94;NUMALT=1;ODDS=0.474762;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80646;QR=248631;RO=6939;RPL=21;RPP=4723.32;RPPR=14350.1;RPR=2236;RUN=1;SAF=11;SAP=4808.94;SAR=2246;SRF=63;SRP=14528.6;SRR=6876;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:6,11:6:216:11:396:-30.7983,0,-14.5808	0/1:130:62,68:62:2228:68:2428:-178.787,0,-161.381	0/1:131:55,76:55:1976:76:2720:-204.117,0,-138.539	0/0:194:194,0:194:6954:0:0:0,-58.3998,-625.345	0/0:44:43,1:43:1548:1:36:0,-9.6539,-135.628	0/0:56:56,0:56:1997:0:0:0,-16.8577,-178.37	0/0:129:129,0:129:4635:0:0:0,-38.8329,-416.464	0/1:135:51,84:51:1820:84:2981:-226.051,0,-122.29	0/1:73:43,30:43:1525:30:1076:-75.0057,0,-115.1	0/1:97:63,34:63:2264:34:1224:-81.0568,0,-174.767	0/1:52:30,22:30:1072:22:777:-54.4491,0,-80.9909	0/0:83:83,0:83:2967:0:0:0,-24.9855,-266.972	0/1:82:38,44:38:1355:44:1571:-116.397,0,-97.5199	0/1:83:41,42:41:1472:42:1495:-109.312,0,-107.511	0/0:77:77,0:77:2759:0:0:0,-23.1793,-248.38	0/1:74:38,36:38:1359:36:1292:-93.6824,0,-100.209	0/1:76:35,41:35:1256:41:1461:-108.359,0,-89.8366	0/0:77:77,0:77:2742:0:0:0,-23.1793,-246.587	0/0:52:52,0:52:1868:0:0:0,-15.6536,-167.71	0/1:306:162,144:162:5816:144:5160:-370.577,0,-430.094	0/1:128:49,79:49:1764:79:2812:-214.124,0,-120.411	0/0:71:71,0:71:2548:0:0:0,-21.3731,-227.955	0/1:49:31,18:31:1116:18:648:-43.4858,0,-85.9678	0/1:23:13,10:13:459:10:356:-25.2462,0,-34.7093	0/1:67:37,30:37:1328:30:1076:-76.502,0,-99.3976	0/0:356:356,0:356:12748:0:0:0,-107.167,-1145.36	0/0:221:220,1:220:7884:1:36:0,-63.0249,-704.951	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.15	0/1:259:122,137:122:4388:137:4924:-364.108,0,-316.376	0/1:112:46,66:46:1636:66:2364:-178.51,0,-113.595	0/1:171:84,87:84:3020:87:3120:-228.543,0,-219.956	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6798	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.4899	0/1:9:3,6:3:104:6:212:-16.1836,0,-6.99128	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83481	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2748	0/1:254:130,124:130:4680:124:4439:-321.43,0,-344.682	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.252	0/1:72:35,37:35:1260:37:1328:-97.7714,0,-92.001	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/0:193:193,0:193:6903:0:0:0,-58.0988,-620.8	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.232	0/1:132:47,85:47:1692:85:3056:-234.631,0,-112.595	0/1:135:56,79:56:2016:79:2822:-212.957,0,-140.94	0/1:69:28,41:28:995:41:1452:-109.816,0,-68.9834	0/0:84:84,0:84:3012:0:0:0,-25.2865,-270.939	0/1:146:69,77:69:2472:77:2690:-196.608,0,-178.473	0/0:238:237,1:237:8484:1:36:0,-68.0537,-759.249	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.526	0/1:142:58,84:58:2080:84:3016:-227.951,0,-144.582	0/0:85:85,0:85:3043:0:0:0,-25.5875,-273.929	0/1:9:5,4:5:176:4:144:-10.579,0,-13.3847	0/0:160:160,0:160:5752:0:0:0,-48.1648,-516.417	0/1:33:19,14:19:684:14:495:-34.6583,0,-51.8335	0/1:10:2,8:2:72:8:284:-22.8448,0,-3.82451	0/1:133:63,70:63:2256:70:2516:-186.205,0,-163.124	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.105	0/1:3:2,1:2:72:1:36:-2.52051,0,-5.93172	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.4073	0/1:65:22,43:22:788:43:1511:-115.057,0,-51.5867	0/0:119:117,2:117:4199:2:72:0,-28.9989,-370.089	0/1:7:2,5:2:72:5:180:-14.4133,0,-4.7276	0/0:232:232,0:232:8302:0:0:0,-69.839,-743.597	0/0:198:198,0:198:7108:0:0:0,-59.6039,-638.215	0/1:45:22,23:22:792:23:824:-60.6464,0,-58.0393	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.381	0/0:139:138,1:138:4947:1:36:0,-38.2517,-440.288	0/0:70:70,0:70:2516:0:0:0,-21.0721,-225.254	0/0:40:40,0:40:1405:0:0:0,-12.0412,-126.572	0/0:66:66,0:66:2372:0:0:0,-19.868,-212.906	0/0:108:108,0:108:3876:0:0:0,-32.5112,-348.423	0/1:12:9,3:9:320:3:108:-6.44362,0,-25.4361	0/1:83:50,33:50:1796:33:1184:-81.2859,0,-136.194	0/1:71:36,35:36:1292:35:1260:-92.1074,0,-95.179	0/1:164:66,98:66:2360:98:3487:-262.884,0,-163.197	0/0:186:184,1:184:6608:1:36:0,-52.3835,-590.27	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.028	0/0:101:101,0:101:3618:0:0:0,-30.404,-325.65	0/1:13:8,5:8:288:5:180:-12.6072,0,-22.3467	0/0:128:128,0:128:4584:0:0:0,-38.5318,-411.079	0/0:115:114,0:114:4059:0:0:0,-34.3174,-364.353	0/0:167:167,0:167:5987:0:0:0,-50.272,-538.327	0/1:118:56,62:56:2008:62:2224:-164.381,0,-145.34	0/0:79:79,0:79:2822:0:0:0,-23.7814,-253.491	0/1:82:43,39:43:1522:39:1395:-100.448,0,-112.34	0/1:169:98,71:98:3524:71:2531:-175.815,0,-265.967	0/1:54:28,26:28:980:26:936:-68.1369,0,-71.9461	0/0:98:98,0:98:3520:0:0:0,-29.5009,-316.586	0/0:76:76,0:76:2732:0:0:0,-22.8783,-245.744	0/1:42:19,23:19:680:23:819:-61.2514,0,-48.8691	0/1:96:52,44:52:1855:44:1567:-111.627,0,-138.2	0/1:84:34,50:34:1209:50:1781:-134.714,0,-83.7587	0/0:123:122,1:122:4357:1:36:0,-33.4353,-388.027	0/0:127:127,0:127:4564:0:0:0,-38.2308,-409.256
chr06	12284362	.	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chr06	12418818	.	G	A	23284.5	PASS	AB=0.303054;ABP=2154.15;AC=46;AF=0.244681;AN=188;AO=1952;CIGAR=1X;DP=14890;DPB=14890;DPRA=0.897347;EPP=4241.72;EPPR=28069.3;GTI=7;LEN=1;MEANALT=1.01754;MQM=59.9985;MQMR=59.9803;NS=94;NUMALT=1;ODDS=3.96782;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69787;QR=461159;RO=12933;RPL=0;RPP=4241.72;RPPR=28043.3;RPR=1952;RUN=1;SAF=0;SAP=4241.72;SAR=1952;SRF=3;SRP=28060.6;SRR=12930;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:27,12:27:972:12:432:-27.481,0,-76.0577	0/1:265:192,73:192:6879:73:2620:-156.274,0,-539.404	0/1:143:102,41:102:3627:41:1472:-89.7288,0,-283.394	0/0:396:396,0:396:14149:0:0:0,-119.208,-1272.74	0/0:114:113,1:113:4028:1:36:0,-30.7191,-359.109	0/0:155:155,0:155:5521:0:0:0,-46.6596,-497.006	0/0:307:306,1:306:10893:1:36:0,-88.8179,-976.669	0/1:269:185,84:185:6572:84:3012:-190.334,0,-510.574	0/1:53:35,18:35:1232:18:648:-42.6973,0,-95.2257	0/1:171:109,62:109:3901:62:2224:-148.948,0,-299.806	0/1:118:74,44:74:2624:44:1567:-105.799,0,-200.885	0/0:145:145,0:145:5140:0:0:0,-43.6493,-462.742	0/1:103:72,31:72:2547:31:1108:-69.0249,0,-198.473	0/1:150:118,32:118:4188:32:1144:-58.115,0,-331.946	0/0:135:135,0:135:4806:0:0:0,-40.639,-432.695	0/1:94:56,38:56:1979:38:1347:-93.2327,0,-150.085	0/1:166:118,48:118:4209:48:1716:-104.754,0,-329.019	0/0:161:160,0:160:5685:0:0:0,-48.1648,-511.409	0/0:71:71,0:71:2504:0:0:0,-21.3731,-225.609	0/1:260:194,66:194:6936:66:2352:-133.67,0,-546.037	0/1:234:159,75:159:5696:75:2670:-170.103,0,-442.187	0/0:128:127,1:127:4532:1:36:0,-34.9336,-404.448	0/1:86:57,28:57:2036:28:993:-63.88,0,-157.712	0/1:162:119,43:119:4236:43:1544:-90.4862,0,-332.653	0/1:65:56,9:56:2016:9:324:-9.93891,0,-162.146	0/0:560:560,0:560:19980:0:0:0,-168.577,-1797.7	0/0:255:255,0:255:9107:0:0:0,-76.7626,-819.598	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.133	0/1:299:218,81:218:7803:81:2904:-171.587,0,-612.291	0/1:309:217,92:217:7739:92:3283:-202.672,0,-603.522	0/1:152:107,45:107:3827:45:1608:-99.2535,0,-298.87	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:365:255,110:255:9109:110:3927:-243.747,0,-709.879	0/0:203:203,0:203:7220:0:0:0,-61.1091,-649.855	0/1:102:72,30:72:2563:30:1076:-66.4478,0,-200.215	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:290:290,0:290:10399:0:0:0,-87.2987,-935.824	0/0:59:58,1:58:2063:1:36:0,-14.1625,-182.342	0/1:140:102,38:102:3621:38:1368:-81.2766,0,-283.95	0/1:147:112,35:112:4001:35:1260:-69.4541,0,-316.027	0/1:134:82,52:82:2931:52:1848:-126.26,0,-223.686	0/0:140:139,1:139:4970:1:36:0,-38.5459,-443.85	0/1:159:114,45:114:4084:45:1611:-97.4156,0,-319.882	0/0:331:331,0:331:11827:0:0:0,-99.6409,-1064.29	0/0:217:217,0:217:7729:0:0:0,-65.3235,-695.641	0/1:195:125,70:125:4476:70:2512:-167.631,0,-344.309	0/0:261:261,0:261:9325:0:0:0,-78.5688,-839.216	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:171:170,0:170:6077:0:0:0,-51.1751,-546.787	0/1:77:48,29:48:1719:29:1040:-70.7351,0,-131.815	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:151:116,35:116:4142:35:1243:-66.7183,0,-327.503	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:92:58,34:58:2080:34:1224:-82.7723,0,-159.776	0/0:251:250,1:250:8899:1:36:0,-71.9603,-797.297	0/1:9:5,4:5:172:4:144:-10.6043,0,-13.1087	0/0:348:348,0:348:12445:0:0:0,-104.758,-1119.88	0/0:368:366,2:366:13043:2:72:0,-103.942,-1166.76	0/1:117:83,34:83:2958:34:1216:-74.5261,0,-231.232	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.745	0/0:225:224,1:224:7968:1:36:0,-64.1335,-713.518	0/0:263:263,0:263:9311:0:0:0,-79.1709,-837.96	0/0:54:52,2:52:1860:2:72:0,-9.4189,-160.843	0/0:185:185,0:185:6609:0:0:0,-55.6905,-594.89	0/0:249:249,0:249:8823:0:0:0,-74.9565,-794.059	0/1:48:37,11:37:1324:11:387:-20.7165,0,-105.013	0/1:169:130,39:130:4622:39:1385:-74.0728,0,-365.269	0/1:141:90,51:90:3223:51:1817:-121.365,0,-247.846	0/1:217:174,43:174:6179:43:1540:-73.5696,0,-490.885	0/0:279:278,0:278:9945:0:0:0,-83.6863,-894.629	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:311:306,5:306:10943:5:180:0,-77.0683,-967.897	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:172:172,0:172:6164:0:0:0,-51.7772,-554.829	0/0:166:166,0:166:5929:0:0:0,-49.971,-533.718	0/0:298:297,1:297:10603:1:36:0,-86.1087,-950.556	0/1:180:123,57:123:4344:57:2040:-129.687,0,-336.948	0/0:110:110,0:110:3937:0:0:0,-33.1133,-354.52	0/1:157:101,56:101:3594:56:2000:-133.012,0,-276.405	0/1:259:167,92:167:5923:92:3275:-217.002,0,-455.213	0/1:83:51,32:51:1798:32:1142:-78.1032,0,-137.113	0/0:191:191,0:191:6764:0:0:0,-57.4967,-608.835	0/0:169:169,0:169:6017:0:0:0,-50.8741,-541.634	0/1:52:35,17:35:1243:17:612:-39.7599,0,-96.5203	0/1:117:79,38:79:2797:38:1344:-86.0369,0,-216.749	0/1:93:46,47:46:1637:47:1692:-124.571,0,-119.621	0/0:209:209,0:209:7476:0:0:0,-62.9153,-672.882	0/0:222:221,0:221:7865:0:0:0,-66.5276,-707.519
chr06	12418841	.	C	T	279301	PASS	AB=0.693865;ABP=2099.45;AC=142;AF=0.755319;AN=188;AO=12982;CIGAR=1X;DP=14967;DPB=14967;DPRA=0;EPP=28184.4;EPPR=4287.36;GTI=7;LEN=1;MEANALT=1;MQM=59.9766;MQMR=59.998;NS=94;NUMALT=1;ODDS=2.82471;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=465017;QR=71043;RO=1985;RPL=12981;RPP=28184.4;RPPR=4287.36;RPR=1;RUN=1;SAF=0;SAP=28193.1;SAR=12982;SRF=0;SRP=4313.38;SRR=1985;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:12,28:12:428:28:1004:-78.6347,0,-26.8176	0/1:265:74,191:74:2656:191:6837:-535.625,0,-159.513	0/1:143:41,102:41:1472:102:3649:-285.478,0,-89.7288	1/1:397:0,397:0:0:397:14229:-1279.94,-119.509,0	1/1:113:1,112:1:36:112:3998:-356.412,-30.4181,0	1/1:158:0,158:0:0:158:5634:-507.176,-47.5627,0	1/1:309:1,308:1:36:308:11060:-991.684,-89.42,0	0/1:275:88,187:88:3132:187:6720:-522.06,0,-199.322	0/1:54:18,36:18:640:36:1296:-100.68,0,-41.6737	0/1:173:62,111:62:2232:111:3973:-305.681,0,-149.065	0/1:117:45,72:45:1612:72:2584:-197.588,0,-110.15	1/1:145:0,145:0:0:145:5208:-468.856,-43.6494,0	0/1:97:28,69:28:1004:69:2484:-194.613,0,-61.476	0/1:150:33,117:33:1188:117:4196:-332.666,0,-62.0741	1/1:136:0,136:0:0:136:4892:-440.429,-40.9401,0	0/1:94:38,56:38:1360:56:2016:-153.416,0,-94.4038	0/1:165:48,117:48:1724:117:4176:-326.351,0,-105.774	1/1:161:0,161:0:0:161:5778:-520.133,-48.4658,0	1/1:72:1,71:1:36:71:2544:-225.612,-18.0759,0	0/1:259:65,194:65:2328:194:6950:-547.594,0,-131.813	0/1:238:76,162:76:2728:162:5807:-451.073,0,-174.118	1/1:130:1,129:1:36:129:4628:-413.083,-35.5356,0	0/1:88:30,58:30:1060:58:2080:-160.98,0,-69.2206	0/1:165:45,120:45:1616:120:4304:-337.866,0,-96.0601	0/1:66:9,57:9:324:57:2048:-164.724,0,-9.63787	1/1:558:0,558:0:0:558:19907:-1791.1,-167.975,0	1/1:255:0,255:0:0:255:9145:-823.014,-76.7627,0	1/1:83:0,83:0:0:83:2959:-266.542,-24.9855,0	0/1:301:83,218:83:2972:218:7794:-610.875,0,-177.103	0/1:314:93,221:93:3329:221:7907:-617.131,0,-205.302	0/1:157:50,107:50:1785:107:3824:-297.094,0,-113.669	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:369:112,257:112:4011:257:9237:-720.183,0,-250.098	1/1:202:0,202:0:0:202:7246:-652.191,-60.8081,0	0/1:101:30,71:30:1076:71:2548:-199.166,0,-66.7488	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:293:0,293:0:0:293:10526:-947.237,-88.2018,0	1/1:59:0,59:0:0:59:2119:-190.979,-17.7608,0	0/1:143:40,103:40:1417:103:3700:-290.151,0,-84.7781	0/1:150:37,113:37:1332:113:4060:-320.431,0,-75.0279	0/1:132:51,81:51:1836:81:2889:-220.509,0,-125.785	1/1:140:1,139:1:36:139:4973:-444.119,-38.5459,0	0/1:161:46,115:46:1627:115:4087:-319.547,0,-98.2523	1/1:330:0,330:0:0:330:11841:-1065.54,-99.3399,0	1/1:226:0,226:0:0:226:8093:-728.385,-68.0328,0	0/1:196:69,127:69:2480:127:4549:-350.572,0,-164.451	1/1:265:0,265:0:0:265:9501:-855.044,-79.773,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:171:1,170:1:36:170:6065:-541.924,-47.8779,0	0/1:76:28,48:28:1008:48:1728:-132.927,0,-68.1581	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:152:35,117:35:1252:117:4185:-331.07,0,-67.2285	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:30:0,30:0:0:30:1073:-96.8826,-9.0309,0	0/1:95:35,60:35:1245:60:2118:-162.287,0,-83.7549	1/1:251:1,250:1:36:250:9000:-806.373,-71.9603,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:350:0,350:0:0:350:12555:-1129.77,-105.361,0	1/1:372:3,369:3:93:369:13211:-1180.02,-103.306,0	0/1:113:33,80:33:1179:80:2880:-225.419,0,-72.4008	1/1:67:0,67:0:0:67:2392:-215.536,-20.169,0	1/1:231:1,230:1:36:230:8216:-735.824,-65.9397,0	1/1:259:0,259:0:0:259:9219:-829.681,-77.9668,0	1/1:51:2,49:2:72:49:1726:-148.784,-8.51581,0	1/1:190:0,190:0:0:190:6820:-613.868,-57.1957,0	1/1:249:0,249:0:0:249:8903:-801.255,-74.9565,0	0/1:48:10,38:10:360:38:1360:-108.247,0,-18.2949	0/1:169:42,127:42:1493:127:4552:-358.972,0,-83.7885	0/1:140:50,90:50:1800:90:3216:-247.517,0,-120.138	0/1:218:46,172:46:1639:172:6177:-490.399,0,-82.1734	1/1:275:0,275:0:0:275:9808:-882.663,-82.7833,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:313:5,308:5:180:308:11005:-973.718,-77.6703,0	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	1/1:174:0,174:0:0:174:6200:-558.09,-52.3792,0	1/1:164:0,164:0:0:164:5845:-526.161,-49.3689,0	1/1:301:1,300:1:36:300:10759:-964.602,-87.0118,0	0/1:179:57,122:57:2033:122:4376:-340.128,0,-129.356	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0	0/1:159:56,103:56:2016:103:3700:-285.337,0,-133.849	0/1:261:95,166:95:3376:166:5962:-458.115,0,-225.486	0/1:82:32,50:32:1148:50:1777:-135.527,0,-78.9454	1/1:190:0,190:0:0:190:6810:-612.968,-57.1957,0	1/1:170:0,170:0:0:170:6116:-550.537,-51.1751,0	0/1:52:17,35:17:612:35:1256:-97.6917,0,-39.7599	0/1:120:41,79:41:1472:79:2838:-219.534,0,-96.6525	0/1:94:47,47:47:1688:47:1692:-124.27,0,-123.91	1/1:212:0,212:0:0:212:7613:-685.204,-63.8184,0	1/1:225:0,225:0:0:225:8092:-728.292,-67.7318,0
chr06	12425634	.	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chr06	13066434	.	G	T	48327.4	PASS	AB=0.45821;ABP=33.8636;AC=131;AF=0.71978;AN=182;AO=2952;CIGAR=1X;DP=4104;DPB=4104;DPRA=11.5056;EPP=6413.2;EPPR=2493.7;GTI=1;LEN=1;MEANALT=1.01124;MQM=32.9654;MQMR=32.1955;NS=91;NUMALT=1;ODDS=0.808736;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105317;QR=41074;RO=1151;RPL=0;RPP=6413.2;RPPR=2502.38;RPR=2952;RUN=1;SAF=2952;SAP=6413.2;SAR=0;SRF=1150;SRP=2493.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:31,23:31:1107:23:828:-45.2292,0,-64.2282	0/0:11:10,1:10:356:1:36:0,-0.408565,-23.4077	0/1:31:11,20:11:396:20:716:-43.0238,0,-19.6957	1/1:143:1,142:1:36:142:5104:-402.543,-39.8597,0	1/1:52:0,52:0:0:52:1852:-142.891,-15.6536,0	1/1:18:0,18:0:0:18:648:-47.3151,-5.41854,0	1/1:13:0,13:0:0:13:468:-37.4932,-3.91339,0	0/1:86:42,44:42:1503:44:1576:-89.9118,0,-82.9846	0/1:76:56,20:56:1974:20:716:-29.5576,0,-121.565	0/1:30:21,9:21:748:9:324:-16.3326,0,-51.3147	0/1:6:2,4:2:72:4:144:-9.98803,0,-3.99744	1/1:36:0,36:0:0:36:1292:-94.8639,-10.8371,0	0/1:30:16,14:16:572:14:500:-27.5788,0,-32.653	0/1:15:10,5:10:360:5:176:-9.39243,0,-23.2808	1/1:25:0,25:0:0:25:896:-71.479,-7.52575,0	0/1:28:18,10:18:640:10:360:-19.3675,0,-41.0786	0/1:13:10,3:10:360:3:108:-4.21435,0,-22.5018	1/1:14:0,14:0:0:14:500:-37.9019,-4.21442,0	1/1:8:0,8:0:0:8:288:-20.7342,-2.40824,0	0/1:88:56,32:56:2008:32:1144:-63.0339,0,-127.662	0/1:125:70,55:70:2508:55:1949:-112.262,0,-153.272	1/1:29:0,29:0:0:29:1025:-84.6764,-8.72987,0	0/1:85:45,39:45:1608:39:1400:-86.0246,0,-102.504	0/1:49:28,21:28:1000:21:752:-41.3936,0,-61.5725	0/1:42:25,17:25:892:17:608:-34.2985,0,-54.3582	1/1:107:0,107:0:0:107:3791:-311.782,-32.2102,0	1/1:114:0,114:0:0:114:4081:-310.104,-34.3174,0	1/1:5:0,5:0:0:5:180:-13.9112,-1.50515,0	0/1:193:104,89:104:3709:89:3181:-203.487,0,-245.195	0/1:47:20,27:20:705:27:972:-60.0199,0,-39.8666	0/1:51:22,29:22:769:29:1021:-66.1148,0,-45.7797	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:392:-30.4041,-3.31133,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-13.3527,-1.50515,0	1/1:6:0,6:0:0:6:216:-15.9652,-1.80618,0	0/1:61:32,29:32:1137:29:1044:-68.0716,0,-75.8152	1/1:70:1,69:1:36:69:2472:-181.869,-18.0176,0	0/1:14:6,8:6:216:8:288:-16.9758,0,-11.7508	.:.:.:.:.:.:.:.	1/1:93:0,93:0:0:93:3329:-253.727,-27.9958,0	1/1:8:0,8:0:0:8:288:-22.2981,-2.40824,0	0/1:133:74,59:74:2647:59:2104:-120.862,0,-159.462	0/0:12:11,1:11:396:1:32:0,-0.713253,-28.3552	0/1:18:11,7:11:392:7:248:-14.4751,0,-26.2759	1/1:90:1,89:1:36:89:3175:-259.071,-23.4954,0	0/1:50:29,21:29:1044:21:737:-38.4859,0,-61.3726	1/1:151:1,150:1:36:150:5299:-417.132,-41.8599,0	1/1:49:0,49:0:0:49:1726:-137.67,-14.7505,0	0/1:82:51,31:51:1836:31:1112:-62.6815,0,-119.314	1/1:68:0,68:0:0:68:2421:-198.5,-20.47,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.6631	1/1:21:0,21:0:0:21:752:-55.0484,-6.32163,0	0/1:27:14,13:14:504:13:453:-29.7002,0,-33.5677	0/0:13:12,1:12:423:1:36:0,-1.01063,-28.8035	0/1:92:53,39:53:1877:39:1384:-79.1235,0,-112.62	1/1:28:0,28:0:0:28:1000:-79.9248,-8.42884,0	0/1:2:1,1:1:36:1:36:-2.69696,0,-2.69696	1/1:8:0,8:0:0:8:288:-24.3381,-2.40824,0	0/1:52:21,31:21:756:31:1101:-69.0854,0,-42.108	1/1:32:0,32:0:0:32:1133:-91.0148,-9.63296,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-8.73872	1/1:46:0,46:0:0:46:1644:-135.826,-13.8474,0	1/1:87:1,86:1:36:86:3068:-241.133,-23.1351,0	0/1:35:15,20:15:532:20:720:-44.6137,0,-30.2976	1/1:48:0,48:0:0:48:1712:-136.583,-14.4494,0	1/1:48:1,47:1:36:47:1670:-129.023,-11.1033,0	1/1:43:1,42:1:36:42:1480:-114.733,-9.75667,0	1/1:8:0,8:0:0:8:288:-22.1596,-2.40824,0	1/1:13:0,13:0:0:13:468:-34.2526,-3.91339,0	1/1:12:0,12:0:0:12:432:-35.7373,-3.61236,0	0/1:5:1,4:1:36:4:129:-9.49116,0,-1.68247	0/1:94:47,47:47:1692:47:1677:-94.3176,0,-95.3381	0/1:33:23,10:23:813:10:360:-16.4812,0,-49.6713	0/1:125:41,84:41:1438:84:2988:-191.368,0,-72.812	1/1:73:1,72:1:36:72:2588:-200.24,-19.0724,0	1/1:80:0,80:0:0:80:2856:-210.384,-24.0824,0	1/1:43:0,43:0:0:43:1536:-112.196,-12.9443,0	0/1:10:3,7:3:104:7:252:-15.5674,0,-5.01007	1/1:62:0,62:0:0:62:2224:-167.85,-18.6639,0	1/1:45:0,45:0:0:45:1583:-115.91,-13.5464,0	1/1:127:0,127:0:0:127:4551:-361.695,-38.2308,0	0/1:29:19,10:19:684:10:360:-18.6236,0,-44.4519	1/1:15:0,15:0:0:15:540:-43.231,-4.51545,0	0/1:13:7,6:7:252:6:212:-13.4352,0,-16.4874	0/1:59:35,24:35:1256:24:856:-49.9502,0,-80.7918	0/1:9:7,2:7:252:2:72:-2.80598,0,-15.8684	1/1:23:0,23:0:0:23:816:-60.1183,-6.92369,0	1/1:14:0,14:0:0:14:500:-36.7608,-4.21442,0	0/1:7:4,3:4:140:3:108:-6.4455,0,-9.05081	0/1:19:10,9:10:356:9:320:-19.186,0,-21.9353	0/1:16:10,6:10:360:6:216:-12.7155,0,-23.8276	1/1:8:0,8:0:0:8:273:-22.258,-2.40824,0	1/1:27:1,26:1:36:26:936:-70.882,-4.94019,0
chr06	13066439	.	TGT	GGT,TGGT	65403.9	PASS	AB=0.472429,0.523597;ABP=16.3013,12.7458;AC=131,51;AF=0.71978,0.28022;AN=182;AO=3001,1099;CIGAR=1X2M,1M1I2M;DP=4112;DPB=4479;DPRA=7.75379,1.08607;EPP=6519.6,2380.78;EPPR=0;GTI=1;LEN=1,1;MEANALT=1.65909,2.1;MQM=32.9973,32.263;MQMR=0;NS=91;NUMALT=2;ODDS=0.838782;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=98094,35159;QR=0;RO=0;RPL=0,0;RPP=6519.6,2389.46;RPPR=0;RPR=3001,1099;RUN=1,1;SAF=3001,1098;SAP=6519.6,2380.78;SAR=0,1;SRF=0;SRP=0;SRR=0;TYPE=snp,ins	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:0,23,31:0:0:23,31:691,926:-115.465,-65.8843,-58.9606,-49.8523,0,-40.5203	2/2:11:0,1,10:0:0:1,10:30,291:-23.7015,-21.5727,-21.2716,-3.0103,-0.612143,0	1/2:32:0,21,11:0:0:21,11:629,330:-68.2833,-23.6805,-17.3589,-44.8725,0,-41.5612	1/1:144:0,143,1:0:0:143,1:4828,34:-396.069,-43.0473,0,-393.581,-40.2493,-393.28	1/1:51:0,51,0:0:0:51,0:1634,0:-133.753,-15.3525,0,-133.753,-15.3525,-133.753	1/1:19:0,19,0:0:0:19,0:570,0:-46.426,-5.71957,0,-46.426,-5.71957,-46.426	1/1:14:0,14,0:0:0:14,0:467,0:-38.4005,-4.21442,0,-38.4005,-4.21442,-38.4005	1/2:90:0,49,41:0:0:49,41:1474,1228:-192.262,-87.3473,-72.5969,-105.185,0,-92.8428	1/2:72:0,21,51:0:0:21,51:636,1526:-153.953,-108.45,-102.128,-45.7764,0,-30.4239	1/2:29:0,9,20:0:0:9,20:287,678:-71.1348,-50.2139,-47.5046,-21.2186,0,-15.198	1/2:8:0,4,4:0:0:4,4:136,128:-19.6467,-9.68641,-8.48229,-10.2624,0,-9.05827	1/1:37:0,37,0:0:0:37,0:1107,0:-90.3774,-11.1381,0,-90.3774,-11.1381,-90.3774	1/2:29:0,14,15:0:0:14,15:418,448:-61.6277,-32.0123,-27.7979,-29.8839,0,-25.3685	1/2:15:0,5,10:0:0:5,10:160,309:-34.158,-22.6144,-21.1093,-11.8307,0,-8.82044	1/1:25:0,25,0:0:0:25,0:838,0:-69.1747,-7.52575,0,-69.1747,-7.52575,-69.1747	1/2:27:0,10,17:0:0:10,17:315,544:-62.3228,-39.5287,-36.5184,-23.082,0,-17.9645	1/2:14:0,4,10:0:0:4,10:120,300:-30.0653,-21.5523,-20.3482,-8.78287,0,-5.77257	1/1:15:0,15,0:0:0:15,0:460,0:-38.1581,-4.51545,0,-38.1581,-4.51545,-38.1581	1/1:7:0,7,0:0:0:7,0:206,0:-16.9093,-2.10721,0,-16.9093,-2.10721,-16.9093	1/2:87:0,35,50:0:0:35,50:1138,1635:-201.389,-118.686,-108.15,-82.7468,0,-67.6953	1/2:126:0,58,68:0:0:58,68:1854,2148:-288.873,-154.964,-137.505,-134.197,0,-113.727	1/1:31:0,31,0:0:0:31,0:1102,0:-91.1085,-9.33193,0,-91.1085,-9.33193,-91.1085	1/2:83:0,40,43:0:0:40,43:1345,1443:-204.845,-105.945,-93.904,-99.2071,0,-86.2628	1/2:48:0,21,27:0:0:21,27:628,845:-106.111,-61.1195,-54.7978,-45.2682,0,-37.1404	1/2:43:0,19,24:0:0:19,24:609,746:-97.649,-53.6996,-47.98,-44.2356,0,-37.0109	1/1:112:0,111,0:0:0:111,0:3932,0:-324.985,-33.4143,0,-324.985,-33.4143,-324.985	1/1:118:0,118,0:0:0:118,0:3737,0:-304.373,-35.5215,0,-304.373,-35.5215,-304.373	1/1:5:0,5,0:0:0:5,0:158,0:-13.152,-1.50515,0,-13.152,-1.50515,-13.152	1/2:190:0,88,101:0:0:88,101:3109,3555:-493.652,-262.948,-236.457,-230.738,0,-200.334	1/2:45:0,26,18:0:0:26,18:826,574:-101.041,-41.4039,-33.5771,-59.6729,0,-54.2544	1/2:49:0,29,19:0:0:29,19:968,635:-117.25,-46.5152,-37.7853,-70.7218,0,-65.0023	.:.:.:.:.:.:.:.	1/1:10:0,10,0:0:0:10,0:320,0:-26.3819,-3.0103,0,-26.3819,-3.0103,-26.3819	.:.:.:.:.:.:.:.	1/1:5:0,5,0:0:0:5,0:150,0:-12.4163,-1.50515,0,-12.4163,-1.50515,-12.4163	1/1:5:0,5,0:0:0:5,0:150,0:-12.4163,-1.50515,0,-12.4163,-1.50515,-12.4163	1/2:60:0,28,32:0:0:28,32:1008,1127:-158.684,-83.9749,-75.5461,-75.0365,0,-65.4035	1/1:72:0,71,1:0:0:71,1:2199,32:-179.008,-21.3731,0,-176.7,-18.7751,-176.399	1/2:14:0,8,6:0:0:8,6:240,180:-30.0653,-13.0393,-10.6311,-17.2958,0,-15.4896	.:.:.:.:.:.:.:.	1/1:91:0,91,0:0:0:91,0:2893,0:-236.445,-27.3937,0,-236.445,-27.3937,-236.445	1/1:8:0,8,0:0:0:8,0:256,0:-21.1635,-2.40824,0,-21.1635,-2.40824,-21.1635	1/2:127:0,59,67:0:0:59,67:1877,2107:-287.372,-152.135,-134.374,-135.32,0,-115.151	2/2:11:0,0,11:0:0:0,11:0,364:-30.0817,-30.0817,-30.0817,-3.31133,-3.31133,0	1/2:19:0,7,12:0:0:7,12:232,399:-46.5077,-29.6321,-27.5249,-17.1783,0,-13.566	1/1:94:0,94,0:0:0:94,0:3341,0:-277.15,-28.2968,0,-277.15,-28.2968,-277.15	1/2:50:0,21,29:0:0:21,29:636,871:-106.496,-62.3559,-56.0343,-44.4087,0,-35.6788	1/1:154:0,152,0:0:0:152,0:5078,0:-417.441,-45.7566,0,-417.441,-45.7566,-417.441	1/1:50:0,50,0:0:0:50,0:1686,0:-138.72,-15.0515,0,-138.72,-15.0515,-138.72	1/2:81:0,32,48:0:0:32,48:1062,1580:-193.33,-115.807,-106.174,-77.5349,0,-63.0854	1/1:67:0,67,0:0:0:67,0:2377,0:-197.06,-20.169,0,-197.06,-20.169,-197.06	2/2:4:0,0,4:0:0:0,4:0,136:-11.4665,-11.4665,-11.4665,-1.20412,-1.20412,0	1/1:21:0,21,0:0:0:21,0:630,0:-51.2846,-6.32163,0,-51.2846,-6.32163,-51.2846	1/2:27:0,13,14:0:0:13,14:468,481:-70.6903,-35.9988,-32.0854,-35.0151,0,-30.8007	2/2:13:0,1,12:0:0:1,12:30,364:-29.7158,-27.5879,-27.2869,-3.61236,-1.2142,0	1/2:92:0,40,52:0:0:40,52:1280,1599:-207.015,-114.683,-102.642,-92.6166,0,-76.963	1/1:30:0,30,0:0:0:30,0:995,0:-81.9678,-9.0309,0,-81.9678,-9.0309,-81.9678	1/2:2:0,1,1:0:0:1,1:36,36:-5.66609,-2.99799,-2.69696,-2.99799,0,-2.69696	1/1:9:0,9,0:0:0:9,0:324,0:-27.3069,-2.70927,0,-27.3069,-2.70927,-27.3069	1/2:54:0,32,22:0:0:32,22:1017,698:-123.951,-50.5271,-40.8941,-73.7118,0,-67.0891	1/1:33:0,33,0:0:0:33,0:1118,0:-92.2849,-9.93399,0,-92.2849,-9.93399,-92.2849	2/2:3:0,0,3:0:0:0,3:0,102:-8.67736,-8.67736,-8.67736,-0.90309,-0.90309,0	1/1:47:0,47,0:0:0:47,0:1684,0:-139.157,-14.1484,0,-139.157,-14.1484,-139.157	1/1:88:0,88,0:0:0:88,0:2948,0:-242.465,-26.4906,0,-242.465,-26.4906,-242.465	1/2:34:0,20,14:0:0:20,14:638,441:-77.9978,-32.0123,-25.9917,-46.2723,0,-42.0579	1/1:47:0,47,0:0:0:47,0:1580,0:-130.23,-14.1484,0,-130.23,-14.1484,-130.23	1/1:45:0,45,0:0:0:45,0:1514,0:-124.98,-13.5464,0,-124.98,-13.5464,-124.98	1/1:44:0,43,1:0:0:43,1:1440,34:-118.109,-12.9443,0,-115.621,-10.1463,-115.32	1/1:8:0,8,0:0:0:8,0:254,0:-20.9811,-2.40824,0,-20.9811,-2.40824,-20.9811	1/1:13:0,13,0:0:0:13,0:390,0:-31.8504,-3.91339,0,-31.8504,-3.91339,-31.8504	1/1:12:0,12,0:0:0:12,0:428,0:-35.5961,-3.61236,0,-35.5961,-3.61236,-35.5961	1/2:5:0,4,1:0:0:4,1:136,34:-12.9969,-2.79803,-1.59391,-10.5101,0,-10.2091	1/2:96:0,48,47:0:0:48,47:1434,1404:-202.173,-100.063,-85.6135,-102.149,0,-88.0007	1/2:32:0,10,22:0:0:10,22:300,660:-68.3736,-47.0912,-44.0809,-21.5523,0,-14.9296	1/2:124:0,85,39:0:0:85,39:2698,1244:-284.402,-89.9475,-64.36,-194.743,0,-183.003	1/1:71:0,70,0:0:0:70,0:2338,0:-191.556,-21.0721,0,-191.556,-21.0721,-191.556	1/1:84:0,84,0:0:0:84,0:2527,0:-205.769,-25.2865,0,-205.769,-25.2865,-205.769	1/1:43:0,43,0:0:0:43,0:1288,0:-104.548,-12.9443,0,-104.548,-12.9443,-104.548	1/2:10:0,7,3:0:0:7,3:210,90:-21.5523,-6.65463,-4.54742,-15.1676,0,-14.2645	1/1:61:0,61,0:0:0:61,0:1914,0:-156.193,-18.3628,0,-156.193,-18.3628,-156.193	1/1:46:0,46,0:0:0:46,0:1372,0:-111.295,-13.8474,0,-111.295,-13.8474,-111.295	1/1:131:0,131,0:0:0:131,0:4402,0:-362.054,-39.4349,0,-362.054,-39.4349,-362.054	1/2:29:0,10,19:0:0:10,19:318,620:-68.2926,-45.3928,-42.3825,-23.1909,0,-17.4714	1/1:15:0,15,0:0:0:15,0:508,0:-41.9659,-4.51545,0,-41.9659,-4.51545,-41.9659	1/2:13:0,6,7:0:0:6,7:204,238:-32.6555,-17.7268,-15.9206,-15.2386,0,-13.1314	1/2:53:0,24,29:0:0:24,29:800,967:-129.617,-71.03,-63.8053,-58.8918,0,-50.1619	1/2:9:0,2,7:0:0:2,7:60,210:-19.4241,-15.1676,-14.5655,-4.5264,0,-2.41919	1/1:25:0,25,0:0:0:25,0:751,0:-61.092,-7.52575,0,-61.092,-7.52575,-61.092	1/1:14:0,14,0:0:0:14,0:420,0:-34.2797,-4.21442,0,-34.2797,-4.21442,-34.2797	1/2:7:0,3,4:0:0:3,4:96,128:-16.4471,-9.52258,-8.61949,-7.21441,0,-6.01029	1/2:19:0,9,10:0:0:9,10:288,320:-44.1451,-23.3716,-20.6623,-21.0634,0,-18.0531	1/2:15:0,6,9:0:0:6,9:204,302:-37.2691,-22.3386,-20.5325,-15.2386,0,-12.5294	1/1:8:0,8,0:0:0:8,0:268,0:-22.4198,-2.40824,0,-22.4198,-2.40824,-22.4198	1/1:28:0,26,2:0:0:26,2:867,68:-71.3049,-7.82678,0,-66.3283,-2.54063,-65.7262
chr06	13066449	.	G	T	14298.4	PASS	AB=0.537686;ABP=28.7062;AC=50;AF=0.274725;AN=182;AO=1152;CIGAR=1X;DP=4189;DPB=4189;DPRA=1.16914;EPP=2487.2;EPPR=6223.06;GTI=2;LEN=1;MEANALT=1.04082;MQM=32.1432;MQMR=33.0297;NS=91;NUMALT=1;ODDS=1.26744;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41301;QR=108489;RO=3034;RPL=1149;RPP=2478.56;RPPR=6223.06;RPR=3;RUN=1;SAF=1151;SAP=2495.87;SAR=1;SRF=3034;SRP=6591.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:25,32:25:896:32:1152:-66.2799,0,-50.075	1/1:11:1,10:1:36:10:360:-23.5124,-0.408566,0	0/1:32:21,11:21:752:11:396:-19.3947,0,-45.3353	0/0:146:145,1:145:5157:1:36:0,-40.7628,-407.843	0/0:50:50,0:50:1800:0:0:0,-15.0515,-138.057	0/0:19:19,0:19:680:0:0:0,-5.71957,-49.8234	0/0:14:14,0:14:504:0:0:0,-4.21442,-39.7083	0/1:94:50,44:50:1761:44:1580:-86.0396,0,-100.922	0/1:77:21,56:21:752:56:1989:-121.909,0,-32.2415	0/1:31:9,22:9:324:22:792:-54.204,0,-16.0315	0/1:8:4,4:4:144:4:140:-8.9548,0,-9.38597	0/0:37:37,0:37:1308:0:0:0,-11.1381,-96.4673	0/1:30:14,16:14:504:16:572:-32.6834,0,-27.6831	0/1:16:5,11:5:180:11:392:-25.5876,0,-9.23439	0/0:25:25,0:25:896:0:0:0,-7.52575,-71.5193	0/1:28:10,18:10:360:18:648:-41.3601,0,-19.3675	0/1:14:4,10:4:144:10:360:-22.2007,0,-6.52581	0/0:15:15,0:15:540:0:0:0,-4.51545,-40.5878	0/0:8:8,0:8:288:0:0:0,-2.40824,-20.7342	0/1:90:36,54:36:1273:54:1929:-121.536,0,-71.8352	0/1:128:57,71:57:2039:71:2540:-155.015,0,-117.593	0/0:31:31,0:31:1112:0:0:0,-9.33193,-91.3523	0/1:85:39,46:39:1400:46:1647:-104.73,0,-86.0825	0/1:48:19,28:19:676:28:1008:-62.2071,0,-37.0188	0/1:44:19,25:19:684:25:892:-53.9784,0,-39.3553	0/0:114:113,1:113:4032:1:36:0,-31.8505,-329.9	0/0:117:117,0:117:4191:0:0:0,-35.2205,-318.095	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.9112	0/1:197:92,105:92:3300:105:3758:-247.635,0,-212.035	0/1:46:27,19:27:959:19:680:-37.5363,0,-59.8381	0/1:52:29,23:29:1040:23:828:-49.6721,0,-67.0364	.:.:.:.:.:.:.:.	0/0:11:11,0:11:396:0:0:0,-3.31133,-30.5454	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.3527	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.3527	0/1:61:29,32:29:1040:32:1152:-76.9102,0,-67.8507	0/0:72:72,0:72:2558:0:0:0,-21.6742,-192.256	0/1:14:8,6:8:284:6:216:-11.7508,0,-16.8708	.:.:.:.:.:.:.:.	0/0:93:93,0:93:3340:0:0:0,-27.9958,-254.543	0/0:8:8,0:8:288:0:0:0,-2.40824,-22.2981	0/1:133:59,74:59:2120:74:2664:-160.09,0,-121.463	1/1:12:1,11:1:36:11:396:-28.1998,-0.557822,0	0/1:19:7,12:7:252:12:432:-29.0255,0,-14.3162	0/0:92:92,0:92:3308:0:0:0,-27.6948,-273.232	0/1:51:21,30:21:756:30:1076:-63.5801,0,-39.0615	0/0:155:155,0:155:5516:0:0:0,-46.6596,-438	0/0:50:50,0:50:1781:0:0:0,-15.0515,-141.72	0/1:83:32,50:32:1152:50:1781:-115.94,0,-66.0641	0/0:67:67,0:67:2412:0:0:0,-20.169,-198.036	1/1:5:0,5:0:0:5:180:-14.6631,-1.50515,0	0/0:21:21,0:21:756:0:0:0,-6.32163,-55.1525	0/1:27:13,14:13:468:14:500:-33.3459,0,-30.8007	0/1:13:2,11:2:68:11:396:-24.9628,0,-2.07991	0/1:93:40,53:40:1421:53:1908:-113.698,0,-81.2415	0/0:31:31,0:31:1116:0:0:0,-9.33193,-87.8984	0/1:2:1,1:1:36:1:36:-2.69696,0,-2.69696	0/0:8:8,0:8:288:0:0:0,-2.40824,-24.3381	0/1:52:31,21:31:1108:21:756:-42.108,0,-69.4388	0/0:33:33,0:33:1180:0:0:0,-9.93399,-94.7044	1/1:3:0,3:0:0:3:108:-8.92535,-0.90309,0	0/0:47:47,0:47:1669:0:0:0,-14.1484,-137.962	0/0:89:89,0:89:3177:0:0:0,-26.7917,-252.361	0/1:35:20,15:20:716:15:540:-30.5794,0,-44.4731	0/0:49:49,0:49:1764:0:0:0,-14.7505,-140.32	0/0:47:47,0:47:1665:0:0:0,-14.1484,-132.406	0/0:43:42,1:42:1508:1:36:0,-9.75666,-116.175	0/0:8:8,0:8:288:0:0:0,-2.40824,-22.1596	0/0:13:13,0:13:468:0:0:0,-3.91339,-34.2526	0/0:12:12,0:12:428:0:0:0,-3.61236,-35.5152	0/1:5:4,1:4:144:1:36:-1.68247,0,-10.5167	0/1:97:49,48:49:1734:48:1709:-96.1735,0,-97.8446	0/1:32:9,23:9:324:23:828:-50.7445,0,-14.1697	0/1:126:86,40:86:3092:40:1440:-72.0651,0,-197.898	0/0:72:72,0:72:2549:0:0:0,-21.6742,-202.013	0/0:86:86,0:86:3092:0:0:0,-25.8886,-227.204	0/0:43:43,0:43:1536:0:0:0,-12.9443,-112.316	0/1:10:7,3:7:252:3:108:-5.11744,0,-15.5674	0/0:63:63,0:63:2256:0:0:0,-18.9649,-170.459	0/0:49:49,0:49:1756:0:0:0,-14.7505,-127.494	0/0:132:131,0:131:4663:0:0:0,-39.4349,-371.09	0/1:29:10,19:10:356:19:684:-44.4519,0,-18.4416	0/0:15:15,0:15:540:0:0:0,-4.51545,-43.231	0/1:13:6,7:6:216:7:252:-16.4874,0,-13.6185	0/1:60:26,34:26:932:34:1220:-77.7286,0,-55.5682	0/1:9:2,7:2:72:7:248:-15.7632,0,-2.80598	0/0:24:24,0:24:860:0:0:0,-7.22472,-62.9565	0/0:15:15,0:15:536:0:0:0,-4.51545,-39.2223	0/1:7:3,4:3:108:4:144:-9.19458,0,-6.4455	0/1:19:9,10:9:324:10:360:-22.0767,0,-19.3276	0/1:16:6,10:6:216:10:360:-23.8276,0,-12.7155	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.2697	0/0:28:28,0:28:1008:0:0:0,-8.42884,-79.8076
chr06	13066652	.	C	A	16308.2	PASS	AB=0.50557;ABP=3.76013;AC=50;AF=0.265957;AN=188;AO=1416;CIGAR=1X;DP=5714;DPB=5714;DPRA=0.941807;EPP=3077.82;EPPR=9318.63;GTI=2;LEN=1;MEANALT=1.04082;MQM=31.7338;MQMR=59.1932;NS=94;NUMALT=1;ODDS=1.43473;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49812;QR=151342;RO=4290;RPL=0;RPP=3077.82;RPPR=5588.95;RPR=1416;RUN=1;SAF=0;SAP=3077.82;SAR=1416;SRF=484;SRP=5588.95;SRR=3806;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:10,15:10:356:15:527:-34.1931,0,-24.839	0/1:95:28,67:28:1000:67:2381:-155.424,0,-61.5415	0/1:113:48,65:48:1703:65:2302:-147.017,0,-119.312	0/0:107:105,0:105:3694:0:0:0,-31.6081,-332.284	0/0:47:47,0:47:1658:0:0:0,-14.1484,-149.468	0/0:25:25,0:25:874:0:0:0,-7.52575,-78.7655	0/0:86:86,0:86:3001:0:0:0,-25.8886,-270.107	0/1:76:35,41:35:1240:41:1449:-89.8232,0,-88.8184	0/1:71:32,39:32:1127:39:1348:-84.6358,0,-80.3561	0/1:69:35,34:35:1240:34:1198:-69.5602,0,-91.131	0/1:40:24,16:24:829:16:560:-31.6862,0,-62.8801	0/0:47:47,0:47:1634:0:0:0,-14.1484,-147.343	0/1:32:23,9:23:802:9:316:-15.6576,0,-62.8563	0/1:48:21,27:21:748:27:938:-58.2373,0,-53.1774	0/0:33:33,0:33:1141:0:0:0,-9.93399,-102.99	0/1:22:16,6:16:558:6:216:-9.29001,0,-43.9238	0/1:37:19,17:19:672:17:603:-36.1321,0,-49.6471	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2284	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4339	0/1:182:79,103:79:2807:103:3632:-221.731,0,-198.064	0/1:61:28,33:28:991:33:1143:-68.9196,0,-71.1223	0/0:98:98,0:98:3466:0:0:0,-29.5009,-312.111	0/1:49:32,17:32:1131:17:584:-29.9481,0,-87.3088	0/1:94:45,49:45:1591:49:1702:-101.841,0,-115.076	0/1:65:31,34:31:1078:34:1207:-72.6359,0,-77.5841	0/0:258:258,0:258:9073:0:0:0,-77.6657,-815.938	0/0:111:111,0:111:3936:0:0:0,-33.4143,-354.268	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2049	0/1:270:148,120:148:5253:120:4206:-241.583,0,-391.7	0/1:83:39,44:39:1359:44:1564:-90.5233,0,-97.6128	0/1:87:43,44:43:1515:44:1564:-92.9708,0,-110.085	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.5542	1/1:1:0,1:0:0:1:21:-2.03658,-0.30103,0	1/1:6:0,6:0:0:6:216:-17.18,-1.80618,0	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:111:77,34:77:2730:34:1190:-58.2513,0,-212.492	0/0:77:77,0:77:2726:0:0:0,-23.1793,-245.562	0/1:45:25,20:25:883:20:712:-42.6704,0,-66.2411	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:82:82,0:82:2911:0:0:0,-24.6845,-261.268	0/0:26:26,0:26:911:0:0:0,-7.82678,-82.305	0/1:90:38,52:38:1339:52:1835:-110.574,0,-93.3313	0/1:39:18,21:18:636:21:735:-43.5864,0,-45.8208	0/1:42:18,24:18:635:24:842:-51.9418,0,-44.8337	0/0:104:104,0:104:3671:0:0:0,-31.3071,-330.488	0/1:93:54,39:54:1907:39:1384:-79.6307,0,-143.89	0/0:80:80,0:80:2810:0:0:0,-24.0824,-253.057	0/0:68:68,0:68:2392:0:0:0,-20.47,-215.06	0/1:86:53,33:53:1892:33:1172:-61.0595,0,-144.65	0/0:210:210,0:210:7424:0:0:0,-63.2163,-667.653	0/1:9:3,6:3:104:6:207:-13.6565,0,-6.99354	0/0:85:84,0:84:2987:0:0:0,-25.2865,-268.692	0/1:24:15,9:15:540:9:316:-17.5393,0,-41.7009	0/1:12:6,6:6:207:6:212:-13.405,0,-15.3545	0/1:84:41,43:41:1447:43:1510:-90.0879,0,-105.215	0/0:33:33,0:33:1154:0:0:0,-9.93399,-104.128	0/1:7:3,4:3:108:4:140:-8.19479,0,-7.96796	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8984	0/1:42:19,23:19:684:23:812:-49.4535,0,-49.2424	0/0:72:72,0:72:2529:0:0:0,-21.6742,-227.845	0/1:4:1,3:1:36:3:108:-7.34859,0,-2.25037	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.116	0/0:109:109,0:109:3834:0:0:0,-32.8123,-344.477	0/1:53:24,29:24:852:29:1018:-60.9918,0,-61.0458	0/0:47:47,0:47:1658:0:0:0,-14.1484,-149.307	0/0:103:101,2:101:3603:2:72:0,-25.2025,-318.433	0/0:61:61,0:61:2145:0:0:0,-18.3628,-193.226	0/0:17:17,0:17:591:0:0:0,-5.11751,-53.4766	0/0:49:49,0:49:1710:0:0:0,-14.7505,-153.911	0/0:95:95,0:95:3333:0:0:0,-28.5978,-300.016	0/1:13:7,6:7:252:6:195:-12.0249,0,-18.0812	0/1:52:20,32:20:700:32:1152:-73.0899,0,-47.4629	0/1:52:29,23:29:1013:23:816:-48.4339,0,-75.8091	0/1:122:58,64:58:2019:64:2249:-135.514,0,-145.234	0/0:64:64,0:64:2255:0:0:0,-19.2659,-203.166	0/0:51:51,0:51:1798:0:0:0,-15.3525,-162.084	0/0:71:71,0:71:2519:0:0:0,-21.3731,-226.932	0/1:9:6,3:6:207:3:99:-5.55085,0,-16.2576	0/0:52:52,0:52:1823:0:0:0,-15.6536,-164.199	0/0:62:60,0:60:2126:0:0:0,-18.0618,-190.846	0/0:192:192,0:192:6796:0:0:0,-57.7978,-610.942	0/1:56:25,31:25:880:31:1087:-65.2371,0,-62.6567	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:38:13,25:13:468:25:888:-55.8034,0,-31.0181	0/1:54:18,36:18:636:36:1257:-81.1464,0,-41.2709	0/1:29:17,12:17:604:12:400:-23.3038,0,-45.9607	0/0:32:32,0:32:1114:0:0:0,-9.63296,-100.476	0/0:47:47,0:47:1629:0:0:0,-14.1484,-146.872	0/1:28:18,10:18:631:10:360:-19.3675,0,-48.6776	0/1:44:24,20:24:852:20:692:-39.4378,0,-63.7504	0/1:26:7,19:7:248:19:675:-43.134,0,-14.835	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5384	0/0:38:38,0:38:1339:0:0:0,-11.4391,-120.805
chr06	13066659	.	A	G	97211.1	PASS	AB=0.506076;ABP=3.90745;AC=138;AF=0.734043;AN=188;AO=4376;CIGAR=1X;DP=5770;DPB=5770;DPRA=20.8841;EPP=9505.37;EPPR=3019.19;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.1083;MQMR=31.7581;NS=94;NUMALT=1;ODDS=0.432992;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147612;QR=47614;RO=1389;RPL=479;RPP=5800.25;RPPR=3010.51;RPR=3897;RUN=1;SAF=479;SAP=5800.25;SAR=3897;SRF=1;SRP=3010.51;SRR=1388;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:18,12:18:603:12:397:-27.0075,0,-39.1139	0/1:94:64,30:64:2207:30:963:-58.4871,0,-144.899	0/1:115:65,50:65:2256:50:1713:-119.696,0,-143.764	1/1:115:0,115:0:0:115:3824:-344.284,-34.6185,0	1/1:47:0,47:0:0:47:1554:-140.106,-14.1484,0	1/1:22:0,22:0:0:22:748:-67.6,-6.62266,0	1/1:87:0,87:0:0:87:2965:-266.98,-26.1896,0	0/1:78:41,37:41:1403:37:1242:-88.5688,0,-87.4597	0/1:73:38,35:38:1297:35:1143:-81.1807,0,-80.1216	0/1:71:32,39:32:1084:39:1286:-94.5449,0,-61.951	0/1:40:15,25:15:502:25:830:-62.9646,0,-27.937	1/1:48:0,48:0:0:48:1547:-139.508,-14.4494,0	0/1:33:9,24:9:316:24:774:-60.0198,0,-15.0035	0/1:47:25,22:25:840:22:715:-50.4995,0,-51.8596	1/1:34:0,34:0:0:34:1133:-102.264,-10.235,0	0/1:22:5,17:5:150:17:592:-46.9837,0,-5.3622	0/1:35:16,19:16:559:19:642:-47.5573,0,-33.6989	1/1:23:0,23:0:0:23:772:-69.7856,-6.92369,0	1/1:30:0,30:0:0:30:982:-88.6678,-9.0309,0	0/1:180:101,79:101:3475:79:2697:-188.773,0,-213.417	0/1:62:32,30:32:1070:30:992:-70.8946,0,-65.3155	1/1:94:0,94:0:0:94:3255:-293.077,-28.2968,0	0/1:48:17,31:17:574:31:1039:-79.0071,0,-30.272	0/1:90:44,46:44:1551:46:1535:-111.204,0,-90.5521	0/1:68:36,32:36:1250:32:1049:-74.071,0,-75.5755	1/1:256:0,256:0:0:256:8882:-798.39,-77.0637,0	1/1:112:0,112:0:0:112:3784:-340.722,-33.7154,0	1/1:15:0,15:0:0:15:504:-45.6744,-4.51545,0	0/1:265:116,149:116:4030:149:5192:-387.394,0,-230.48	0/1:82:45,37:45:1567:37:1239:-87.1091,0,-91.2743	0/1:85:44,41:44:1513:41:1384:-98.9027,0,-91.4493	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:19:0,19:0:0:19:635:-57.4627,-5.71957,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.82108	0/0:5:5,0:5:172:0:0:0,-1.50515,-14.0423	1/1:11:0,11:0:0:11:368:-33.4411,-3.31133,0	0/1:112:34,78:34:1164:78:2653:-205.195,0,-56.8385	1/1:77:0,77:0:0:77:2657:-239.361,-23.1793,0	0/1:44:19,25:19:629:25:830:-61.7136,0,-37.4663	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	1/1:82:0,82:0:0:82:2723:-244.797,-24.6845,0	1/1:24:0,24:0:0:24:795:-71.8565,-7.22472,0	0/1:94:54,40:54:1865:40:1363:-94.0264,0,-112.808	0/1:36:19,17:19:650:17:592:-42.7622,0,-39.2061	0/1:41:23,16:23:798:16:541:-36.9739,0,-49.524	1/1:105:0,105:0:0:105:3578:-322.139,-31.6082,0	0/1:94:40,54:40:1368:54:1828:-136.481,0,-79.2627	1/1:84:0,84:0:0:84:2804:-252.434,-25.2865,0	1/1:71:0,71:0:0:71:2417:-217.508,-21.3731,0	0/1:89:32,57:32:1111:57:1947:-148.691,0,-57.3201	1/1:215:0,214:0:0:214:7301:-656.198,-64.4204,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-14.0907	1/1:85:0,85:0:0:85:2890:-260.312,-25.5876,0	0/1:24:9,15:9:296:15:532:-40.978,0,-16.3496	0/1:12:6,6:6:199:6:216:-16.1782,0,-12.765	0/1:86:42,44:42:1453:44:1445:-104.36,0,-85.9391	1/1:31:0,31:0:0:31:1051:-94.8061,-9.33193,0	0/1:7:4,3:4:136:3:104:-7.5956,0,-7.92172	1/1:9:0,8:0:0:8:288:-26.0067,-2.40824,0	0/1:43:21,22:21:723:22:745:-54.4116,0,-42.9438	1/1:73:0,73:0:0:73:2374:-213.91,-21.9752,0	0/1:4:3,1:3:100:1:23:-1.08734,0,-7.05845	1/1:38:0,38:0:0:38:1315:-118.628,-11.4391,0	1/1:114:0,114:0:0:114:3787:-339.932,-34.3174,0	0/1:56:29,27:29:1001:27:913:-65.62,0,-58.7767	1/1:47:0,47:0:0:47:1584:-142.645,-14.1484,0	1/1:105:3,102:3:95:102:3472:-304.368,-23.5316,0	1/1:66:1,65:1:36:65:2182:-193.291,-16.8134,0	1/1:19:0,19:0:0:19:607:-54.9013,-5.71957,0	1/1:50:0,50:0:0:50:1678:-151.078,-15.0515,0	1/1:94:0,94:0:0:94:3224:-290.235,-28.2968,0	0/1:13:6,7:6:208:7:240:-17.3099,0,-12.6016	0/1:51:30,21:30:1041:21:696:-47.3961,0,-65.7346	0/1:54:24,30:24:820:30:1010:-74.9371,0,-48.9746	0/1:122:63,59:63:2186:59:1974:-141.175,0,-131.574	1/1:68:0,68:0:0:68:2320:-208.972,-20.47,0	1/1:52:0,52:0:0:52:1811:-163.166,-15.6536,0	1/1:73:0,73:0:0:73:2503:-224.729,-21.9752,0	0/1:8:2,6:2:63:6:199:-15.8272,0,-3.03192	1/1:51:0,51:0:0:51:1790:-161.228,-15.3525,0	1/1:63:0,63:0:0:63:2129:-191.474,-18.9649,0	1/1:193:0,193:0:0:193:6541:-588.089,-58.0988,0	0/1:58:30,28:30:1002:28:918:-65.458,0,-59.0987	1/1:32:0,32:0:0:32:1006:-90.8287,-9.63296,0	0/1:38:23,14:23:742:14:466:-30.876,0,-47.6817	0/1:55:35,20:35:1190:20:635:-40.8868,0,-76.8627	0/1:29:12,17:12:381:17:519:-38.2742,0,-22.1018	1/1:31:0,31:0:0:31:997:-90.0141,-9.33193,0	1/1:46:0,46:0:0:46:1495:-134.811,-13.8474,0	0/1:29:10,19:10:334:19:629:-48.1832,0,-17.9215	0/1:44:20,24:20:654:24:763:-55.718,0,-38.0002	0/1:28:20,8:20:698:8:257:-15.0098,0,-45.0995	1/1:8:0,8:0:0:8:271:-24.7171,-2.40824,0	1/1:42:0,42:0:0:42:1332:-120.158,-12.6433,0
chr06	13066662	.	G	T	16913.4	PASS	AB=0.512264;ABP=6.68552;AC=50;AF=0.265957;AN=188;AO=1460;CIGAR=1X;DP=5712;DPB=5712;DPRA=1.24357;EPP=3173.36;EPPR=9236.11;GTI=0;LEN=1;MEANALT=1;MQM=31.8432;MQMR=59.1435;NS=94;NUMALT=1;ODDS=2.06263;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51851;QR=141906;RO=4252;RPL=0;RPP=3173.36;RPPR=5571.22;RPR=1460;RUN=1;SAF=0;SAP=3173.36;SAR=1460;SRF=475;SRP=5571.22;SRR=3777;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:12,18:12:405:18:644:-41.2435,0,-27.7322	0/1:94:28,66:28:942:66:2354:-153.383,0,-56.6491	0/1:112:47,65:47:1587:65:2320:-147.665,0,-109.328	0/0:114:114,0:114:3825:0:0:0,-34.3174,-344.323	0/0:42:42,0:42:1442:0:0:0,-12.6433,-130.037	0/0:24:24,0:24:790:0:0:0,-7.22472,-70.9363	0/0:82:81,1:81:2697:1:26:0,-22.1482,-240.419	0/1:78:35,43:35:1204:43:1540:-95.0707,0,-85.1586	0/1:75:36,39:36:1120:39:1377:-84.2172,0,-78.4933	0/1:70:36,34:36:1191:34:1212:-70.0409,0,-86.3884	0/1:41:25,16:25:844:16:567:-31.5193,0,-63.9221	0/0:45:45,0:45:1452:0:0:0,-13.5463,-130.961	0/1:33:23,10:23:769:10:356:-17.9771,0,-59.5779	0/1:49:20,29:20:643:29:1031:-63.9128,0,-42.7904	0/0:30:30,0:30:989:0:0:0,-9.0309,-89.3095	0/1:23:17,6:17:558:6:212:-8.8465,0,-43.6092	0/1:38:20,18:20:654:18:631:-38.3324,0,-47.7273	0/0:23:23,0:23:747:0:0:0,-6.92369,-67.5227	0/0:30:30,0:30:992:0:0:0,-9.0309,-89.1932	0/1:180:76,104:76:2574:104:3698:-227.337,0,-177.713	0/1:64:31,33:31:986:33:1172:-69.6233,0,-69.7437	0/0:94:93,1:93:3211:1:27:0,-25.5972,-286.479	0/1:49:31,18:31:1037:18:640:-34.124,0,-77.6446	0/1:93:45,48:45:1492:48:1707:-101.168,0,-106.506	0/1:67:30,37:30:987:37:1314:-79.6041,0,-68.6985	0/0:246:245,1:245:8490:1:29:0,-71.1539,-759.957	0/0:109:109,0:109:3650:0:0:0,-32.8123,-328.675	0/0:15:15,0:15:494:0:0:0,-4.51545,-44.7719	0/1:274:149,125:149:5124:125:4447:-256.327,0,-378.566	0/1:80:34,46:34:1120:46:1620:-95.9892,0,-77.0083	0/1:86:42,44:42:1433:44:1568:-93.5636,0,-103.005	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07869	0/0:17:17,0:17:563:0:0:0,-5.11751,-50.9688	1/1:1:0,1:0:0:1:36:-2.82108,-0.30103,0	1/1:6:0,6:0:0:6:216:-17.18,-1.80618,0	0/0:10:10,0:10:343:0:0:0,-3.0103,-31.2006	0/1:110:74,36:74:2523:36:1285:-64.2497,0,-193.685	0/0:76:76,0:76:2498:0:0:0,-22.8783,-225.05	0/1:45:25,20:25:780:20:716:-42.8309,0,-56.9463	0/0:3:3,0:3:95:0:0:0,-0.90309,-8.86421	0/0:83:81,2:81:2646:2:59:0,-19.8998,-233.29	0/0:23:23,0:23:742:0:0:0,-6.92369,-67.0799	0/1:92:37,55:37:1204:55:1942:-117.64,0,-80.9516	0/1:38:17,21:17:562:21:743:-44.1687,0,-39.4495	0/1:45:19,26:19:613:26:912:-56.5091,0,-41.9283	0/0:103:103,0:103:3538:0:0:0,-31.0061,-318.577	0/1:95:52,43:52:1741:43:1527:-89.0758,0,-128.353	0/0:84:84,0:84:2726:0:0:0,-25.2865,-245.399	0/0:64:64,0:64:2153:0:0:0,-19.2659,-194.026	0/1:86:53,33:53:1788:33:1180:-61.3403,0,-135.286	0/0:205:205,0:205:6956:0:0:0,-61.7111,-625.571	0/1:9:3,6:3:93:6:216:-14.0907,0,-5.96746	0/0:85:85,0:85:2855:0:0:0,-25.5875,-257.161	0/1:24:15,9:15:528:9:324:-17.8225,0,-40.6162	0/1:12:6,6:6:200:6:216:-13.5676,0,-14.7153	0/1:85:42,43:42:1372:43:1540:-91.0001,0,-97.3893	0/0:35:35,0:35:1120:0:0:0,-10.536,-101.051	0/1:6:3,3:3:108:3:108:-5.75233,0,-8.26899	0/0:9:8,1:8:288:1:25:0,-0.288051,-23.8407	0/1:44:20,24:20:679:24:849:-51.5205,0,-48.1754	0/0:73:73,0:73:2350:0:0:0,-21.9752,-211.751	0/1:4:1,3:1:36:3:104:-7.20352,0,-2.25037	0/0:39:39,0:39:1353:0:0:0,-11.7402,-122.021	0/0:106:106,0:106:3553:0:0:0,-31.9092,-319.981	0/1:56:27,29:27:866:29:1034:-60.5554,0,-61.3717	0/0:45:45,0:45:1505:0:0:0,-13.5463,-135.504	0/0:102:99,3:99:3328:3:97:0,-22.6779,-291.476	0/0:65:64,1:64:2111:1:36:0,-16.5124,-186.658	0/0:17:17,0:17:566:0:0:0,-5.11751,-51.2464	0/0:49:49,0:49:1610:0:0:0,-14.7505,-144.861	0/0:93:93,0:93:3098:0:0:0,-27.9958,-278.933	0/1:13:7,6:7:226:6:216:-12.8866,0,-16.0317	0/1:54:20,34:20:676:34:1207:-76.8565,0,-44.7037	0/1:52:29,23:29:988:23:820:-48.5944,0,-73.5668	0/1:118:54,64:54:1784:64:2271:-137.581,0,-125.286	0/0:63:62,1:62:2117:1:30:0,-15.966,-187.783	0/0:55:55,0:55:1834:0:0:0,-16.5566,-165.308	0/0:70:70,0:70:2338:0:0:0,-21.0721,-210.572	0/1:9:6,3:6:216:3:108:-6.03692,0,-17.0812	0/0:52:52,0:52:1747:0:0:0,-15.6536,-157.48	0/0:63:63,0:63:2105:0:0:0,-18.9649,-189.526	0/0:189:188,1:188:6225:1:30:0,-53.8958,-556.695	0/1:58:27,31:27:884:31:1104:-65.8744,0,-62.3972	0/0:32:32,0:32:1017:0:0:0,-9.63296,-91.8218	0/1:39:13,26:13:390:26:917:-57.7262,0,-23.651	0/1:56:20,36:20:645:36:1288:-81.7462,0,-41.4603	0/1:28:17,11:17:538:11:388:-22.1327,0,-40.2942	0/0:33:33,0:33:1027:0:0:0,-9.93399,-92.699	0/0:43:43,0:43:1391:0:0:0,-12.9443,-125.465	0/1:28:18,10:18:597:10:351:-18.9364,0,-45.6092	0/1:43:23,20:23:742:20:720:-40.935,0,-54.1337	0/1:28:7,21:7:216:21:744:-48.2041,0,-11.3144	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0567	0/0:44:44,0:44:1392:0:0:0,-13.2453,-125.55
chr06	13434025	.	C	A	28177	PASS	AB=0.542228;ABP=50.1426;AC=52;AF=0.27957;AN=186;AO=1710;CIGAR=1X;DP=6001;DPB=6001;DPRA=1.17324;EPP=3716.23;EPPR=7924.55;GTI=2;LEN=1;MEANALT=1;MQM=57.0345;MQMR=59.993;NS=93;NUMALT=1;ODDS=1.24345;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59885;QR=153000;RO=4290;RPL=1710;RPP=3716.23;RPPR=7924.55;RPR=0;RUN=1;SAF=1710;SAP=3716.23;SAR=0;SRF=4290;SRP=9318.63;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:5,29:5:176:29:1016:-81.4558,0,-5.95	0/1:32:13,19:13:464:19:649:-48.4112,0,-32.4645	0/1:76:36,40:36:1284:40:1409:-104.134,0,-92.9851	0/0:128:128,0:128:4542:0:0:0,-38.5318,-408.896	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:83:20,63:20:720:63:2185:-171.463,0,-40.1433	0/1:96:31,65:31:1112:65:2276:-175.687,0,-71.4925	0/1:104:62,42:62:2224:42:1462:-100.536,0,-169.117	0/1:31:17,14:17:608:14:496:-35.6323,0,-45.7201	0/0:101:101,0:101:3565:0:0:0,-30.404,-321.058	0/1:83:48,35:48:1693:35:1230:-85.6891,0,-127.667	0/1:58:24,34:24:837:34:1170:-87.675,0,-58.1857	0/0:92:92,0:92:3265:0:0:0,-27.6948,-294.068	0/1:52:27,25:27:963:25:876:-63.484,0,-71.3324	0/1:41:19,22:19:680:22:784:-58.4552,0,-49.1869	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:52:9,43:9:324:43:1501:-119.562,0,-13.8523	0/1:148:88,60:88:3156:60:2061:-140.906,0,-239.712	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:93:18,75:18:648:75:2653:-210.906,0,-30.6561	0/1:62:21,41:21:743:41:1410:-108.282,0,-48.5295	1/1:49:4,45:4:140:45:1569:-128.343,-1.80589,0	0/0:170:170,0:170:6069:0:0:0,-51.1751,-546.313	0/0:113:113,0:113:4005:0:0:0,-34.0164,-360.641	0/0:35:35,0:35:1238:0:0:0,-10.536,-111.723	0/1:100:45,55:45:1616:55:1921:-143.034,0,-115.627	0/1:86:41,45:41:1476:45:1584:-116.806,0,-107.248	0/1:91:46,45:46:1656:45:1569:-114.089,0,-121.935	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:3:0,3:0:0:3:89:-8.3009,-0.90309,0	1/1:2:0,2:0:0:2:68:-6.4533,-0.60206,0	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/1:180:111,69:111:3984:69:2452:-166.674,0,-304.564	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:56:31,25:31:1116:25:880:-62.5901,0,-83.894	1/1:3:0,3:0:0:3:104:-9.70055,-0.90309,0	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:96:10,86:10:360:86:3033:-242.728,0,-3.84542	0/1:70:36,34:36:1296:34:1202:-87.3606,0,-95.8718	0/1:69:35,34:35:1248:34:1199:-87.4139,0,-91.8538	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:52:17,35:17:612:35:1248:-96.6127,0,-39.7599	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/1:81:51,30:51:1836:30:1064:-71.5295,0,-141.137	0/0:59:59,0:59:2102:0:0:0,-17.7608,-189.448	0/1:10:6,4:6:212:4:144:-10.3024,0,-16.4145	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:40:18,22:18:635:22:761:-56.748,0,-45.4358	0/1:14:2,12:2:72:12:424:-34.2556,0,-2.6223	0/1:96:61,35:61:2167:35:1206:-79.7703,0,-166.398	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	.:.:.:.:.:.:.:.	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:77:30,47:30:1067:47:1633:-123.065,0,-73.1619	0/0:88:88,0:88:3143:0:0:0,-26.4906,-283.095	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:184:184,0:184:6534:0:0:0,-55.3895,-588.146	0/0:122:121,1:121:4329:1:36:0,-33.1274,-386.186	0/1:55:28,27:28:999:27:945:-68.7807,0,-73.6679	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/0:120:119,0:119:4276:0:0:0,-35.8226,-384.656	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:20:15,5:15:536:5:180:-10.5315,0,-42.5542	0/1:118:44,74:44:1563:74:2552:-192.221,0,-105.439	0/1:128:79,49:79:2820:49:1702:-114.418,0,-215.508	0/1:138:46,92:46:1652:92:3195:-245.738,0,-107.426	0/0:121:121,0:121:4320:0:0:0,-36.4246,-388.977	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:140:137,3:137:4871:3:108:0,-32.2369,-428.636	0/1:7:4,3:4:144:3:108:-7.96069,0,-11.2064	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/0:164:161,3:161:5757:3:108:0,-39.4048,-508.28	0/1:61:25,36:25:896:36:1269:-95.91,0,-62.5975	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.593	0/1:50:23,27:23:824:27:945:-70.1598,0,-59.4318	0/1:132:74,58:74:2599:58:2068:-145.839,0,-194.419	0/1:15:8,7:8:279:7:252:-18.4969,0,-20.9321	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:57:57,0:57:2005:0:0:0,-17.1587,-180.719	0/1:28:17,11:17:608:11:384:-26.4574,0,-46.6232	0/1:61:28,33:28:989:33:1180:-88.1066,0,-70.9592	0/1:61:21,40:21:741:40:1417:-109.136,0,-48.6488	0/0:139:139,0:139:4942:0:0:0,-41.8432,-444.93	0/0:121:121,0:121:4300:0:0:0,-36.4246,-387.175
chr06	13434372	.	GCT	GCC	98221.6	PASS	AB=0.475965;ABP=16.7888;AC=137;AF=0.736559;AN=186;AO=3740;CIGAR=2M1X;DP=5202;DPB=5204;DPRA=56.5326;EPP=8115.63;EPPR=3138.62;GTI=1;LEN=1;MEANALT=1.18478;MQM=59.9992;MQMR=60;NS=93;NUMALT=1;ODDS=2.98085;PAIRED=0;PAIREDR=0;PAO=2.5;PQA=89;PQR=53;PRO=1.5;QA=132060;QR=50354;RO=1444;RPL=1609;RPP=161.217;RPPR=70.5966;RPR=2131;RUN=1;SAF=1610;SAP=160.007;SAR=2130;SRF=616;SRP=70.5966;SRR=828;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:15,13:15:529:13:468:-34.0308,0,-39.5128	0/1:78:39,38:39:1360:38:1355:-98.652,0,-99.0986	0/1:60:31,29:31:1100:29:1044:-76.213,0,-81.2479	1/1:69:0,69:0:0:69:2449:-220.664,-20.7711,0	1/1:35:0,35:0:0:35:1235:-111.453,-10.5361,0	1/1:34:0,33:0:0:33:1171:-105.336,-9.93399,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:50:26,24:26:893:24:860:-62.6703,0,-65.6287	0/1:47:21,26:21:744:26:877:-65.0874,0,-53.1361	0/1:52:22,30:22:754:30:1076:-81.4993,0,-52.5202	0/1:51:26,25:26:917:25:869:-63.17,0,-67.4923	1/1:112:0,112:0:0:112:3942:-354.974,-33.7154,0	0/1:105:62,43:62:2171:43:1513:-104.853,0,-164.047	0/1:92:44,47:44:1507:47:1625:-118.888,0,-108.273	1/1:84:0,83:0:0:83:2917:-262.514,-24.9855,0	0/1:87:52,35:52:1765:35:1256:-87.1557,0,-132.935	0/1:79:36,42:36:1277:42:1457:-107.58,0,-91.393	1/1:59:1,56:1:36:56:1984:-175.237,-13.9203,0	1/1:48:0,48:0:0:48:1699:-153.195,-14.4494,0	0/1:33:14,19:14:502:19:680:-51.5952,0,-35.5832	0/1:73:31,42:31:1050:42:1489:-112.327,0,-72.8253	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:33:12,21:12:432:21:752:-58.0723,0,-29.2872	0/1:41:20,21:20:692:21:739:-54.4901,0,-50.2573	0/1:27:13,14:13:458:14:504:-37.5703,0,-33.426	1/1:94:0,94:0:0:94:3344:-300.818,-28.2968,0	1/1:70:1,69:1:36:69:2460:-218.057,-17.4738,0	1/1:48:0,48:0:0:48:1700:-153.286,-14.4494,0	0/1:71:31,40:31:1076:40:1401:-105.012,0,-75.7737	0/1:55:29,26:29:997:26:928:-67.2816,0,-73.4807	0/1:42:21,21:21:735:21:744:-54.64,0,-53.8272	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:8:0,7:0:0:7:252:-22.6691,-2.10721,0	0/1:231:134,97:134:4699:97:3389:-235.687,0,-353.539	1/1:25:0,25:0:0:25:880:-79.5177,-7.52575,0	0/1:84:41,43:41:1430:43:1476:-107.841,0,-103.708	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:52:0,52:0:0:52:1850:-166.779,-15.6536,0	1/1:30:0,30:0:0:30:1073:-96.8826,-9.0309,0	0/1:66:40,26:40:1378:26:932:-64.3309,0,-104.445	0/1:101:43,58:43:1527:58:2040:-153.466,0,-107.319	0/1:92:48,44:48:1642:44:1555:-112.546,0,-120.367	1/1:27:0,27:0:0:27:945:-85.3622,-8.12781,0	0/1:35:20,15:20:702:15:536:-38.0388,0,-52.9679	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:63:39,24:39:1373:24:845:-57.4022,0,-104.903	1/1:25:0,25:0:0:25:882:-79.6965,-7.52575,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:58:0,58:0:0:58:2063:-185.941,-17.4597,0	0/1:17:10,7:10:349:7:243:-17.09,0,-26.6279	0/1:2:1,1:1:33:1:36:-2.99621,0,-2.69707	0/1:47:27,20:27:953:20:708:-49.8972,0,-71.9364	1/1:28:0,28:0:0:28:989:-89.264,-8.42884,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:32:14,18:14:496:18:648:-49.0189,0,-35.3417	1/1:102:0,102:0:0:102:3558:-320.427,-30.7051,0	0/1:4:1,3:1:36:3:99:-8.03246,0,-2.39415	1/1:48:0,47:0:0:47:1667:-150.064,-14.1484,0	1/1:73:1,72:1:36:72:2571:-228.041,-18.3769,0	0/1:27:13,14:13:457:14:500:-37.2084,0,-33.3348	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:59:1,58:1:36:58:2084:-184.232,-14.1625,0	1/1:47:1,44:1:36:44:1550:-136.192,-10.3079,0	1/1:47:0,47:0:0:47:1620:-146.084,-14.1484,0	1/1:34:0,34:0:0:34:1220:-110.048,-10.235,0	1/1:91:0,91:0:0:91:3174:-285.883,-27.3937,0	0/1:18:10,8:10:334:8:284:-20.4848,0,-24.9634	0/1:36:17,19:17:572:19:680:-50.6921,0,-40.9591	0/1:55:34,21:34:1140:21:741:-50.4558,0,-86.339	0/1:79:45,34:45:1555:34:1195:-84.0726,0,-116.456	1/1:66:0,66:0:0:66:2350:-211.758,-19.868,0	1/1:83:0,83:0:0:83:2938:-264.653,-24.9855,0	1/1:87:3,84:3:108:84:2938:-254.581,-16.1144,0	0/1:4:1,3:1:34:3:108:-8.87105,0,-2.19479	1/1:59:0,59:0:0:59:2076:-187.109,-17.7608,0	1/1:49:1,48:1:36:48:1724:-151.847,-11.1522,0	1/1:69:0,69:0:0:69:2426:-218.594,-20.7711,0	0/1:110:70,39:70:2465:39:1383:-91.7324,0,-189.071	1/1:88:0,87:0:0:87:3046:-274.007,-26.1896,0	0/1:98:45,53:45:1573:53:1820:-134.572,0,-112.358	0/1:162:85,77:85:2980:77:2700:-194.475,0,-219.667	0/1:39:21,18:21:748:18:624:-44.7413,0,-55.9055	1/1:72:0,72:0:0:72:2519:-226.962,-21.6742,0	1/1:94:0,93:0:0:93:3265:-293.711,-27.9958,0	0/1:46:19,27:19:677:27:957:-72.5975,0,-47.4109	0/1:82:35,47:35:1224:47:1658:-124.82,0,-85.7779	0/1:98:70,27:70:2442:27:955:-56.7053,0,-190.475	1/1:38:0,37:0:0:37:1324:-119.102,-11.1381,0	1/1:151:0,149:0:0:149:5270:-474.1,-44.8535,0
chr06	13472759	.	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chr06	13538265	.	A	T	47038.1	PASS	AB=0.497059;ABP=3.43175;AC=49;AF=0.260638;AN=188;AO=2804;CIGAR=1X;DP=12581;DPB=12581;DPRA=0.933955;EPP=6083.14;EPPR=21224.8;GTI=3;LEN=1;MEANALT=1.05085;MQM=59.7054;MQMR=59.5568;NS=94;NUMALT=1;ODDS=6.53001;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100168;QR=349930;RO=9773;RPL=2;RPP=6074.46;RPPR=21190.1;RPR=2802;RUN=1;SAF=1;SAP=6083.14;SAR=2803;SRF=4;SRP=21190.1;SRR=9769;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:31,40:31:1112:40:1424:-107.083,0,-78.9475	0/1:197:107,90:107:3825:90:3207:-229.539,0,-285.099	0/1:186:92,94:92:3299:94:3348:-245.332,0,-240.272	0/0:245:245,0:245:8756:0:0:0,-73.7523,-787.887	0/0:150:149,1:149:5343:1:32:0,-41.9552,-477.729	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.704	0/0:185:184,1:184:6608:1:36:0,-52.0923,-590.116	0/1:151:79,72:79:2836:72:2576:-186.61,0,-209.982	0/1:132:82,50:82:2943:50:1792:-121.798,0,-224.856	0/1:141:58,83:58:2080:83:2968:-224.9,0,-143.339	0/1:46:20,26:20:716:26:928:-69.9909,0,-50.9203	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.799	0/1:54:19,35:19:680:35:1248:-96.3692,0,-45.2735	0/1:68:31,37:31:1100:37:1320:-98.6319,0,-78.8292	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.565	0/1:63:32,31:32:1137:31:1103:-80.6149,0,-83.2966	0/1:64:38,26:38:1360:26:932:-64.9329,0,-103.375	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.803	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8359	0/1:285:168,116:168:6024:116:4156:-288.147,0,-456.457	0/1:223:112,111:112:4005:111:3943:-287.713,0,-293.309	0/0:137:137,0:137:4879:0:0:0,-41.2411,-439.245	0/1:79:33,46:33:1184:46:1644:-124.457,0,-83.0365	0/1:178:82,96:82:2931:96:3443:-256.425,0,-210.44	0/1:105:49,56:49:1756:56:2012:-149.74,0,-125.787	0/0:479:479,0:479:17168:0:0:0,-144.193,-1543.66	0/0:319:316,3:316:11339:3:108:0,-85.9534,-1010.11	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.462	0/1:521:252,269:252:9041:269:9596:-706.743,0,-656.196	0/1:212:110,102:110:3922:102:3664:-266.122,0,-289.258	0/1:172:87,85:87:3110:85:3044:-222.406,0,-228.344	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:14:9,5:9:320:5:171:-11.511,0,-24.9279	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5748	0/1:225:116,108:116:4164:108:3872:-280.873,0,-307.128	0/0:350:346,2:346:12370:2:72:0,-98.2664,-1106.02	0/1:64:36,28:36:1292:28:1004:-71.4018,0,-97.015	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:157:157,0:157:5639:0:0:0,-47.2617,-507.419	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.408	0/1:182:112,70:112:4000:70:2512:-171.531,0,-305.378	0/1:123:62,61:62:2209:61:2183:-159.709,0,-161.419	0/1:85:47,38:47:1664:38:1368:-97.8309,0,-124.455	0/0:109:109,0:109:3907:0:0:0,-32.8123,-351.614	0/1:184:101,83:101:3613:83:2976:-212.622,0,-269.853	0/0:269:269,0:269:9651:0:0:0,-80.9771,-867.631	0/0:182:182,0:182:6535:0:0:0,-54.7875,-588.205	0/1:168:67,101:67:2408:101:3632:-276.454,0,-166.401	0/0:249:248,1:248:8891:1:36:0,-71.3592,-796.565	0/1:7:2,5:2:72:5:180:-14.4425,0,-4.72951	0/0:202:202,0:202:7260:0:0:0,-60.8081,-653.345	0/1:28:15,13:15:540:13:459:-33.2152,0,-40.5068	0/1:15:7,8:7:252:8:288:-21.7437,0,-18.5135	0/1:219:97,122:97:3479:122:4355:-326.178,0,-247.304	0/0:56:56,0:56:2012:0:0:0,-16.8577,-180.569	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:16:15,1:15:540:1:36:0,-1.2182,-45.3336	0/1:84:32,52:32:1139:52:1868:-142.175,0,-76.7263	0/0:123:122,1:122:4379:1:36:0,-33.4284,-390.673	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:371:371,0:371:13281:0:0:0,-111.682,-1193.41	0/0:245:244,1:244:8723:1:36:0,-70.1541,-780.995	0/1:87:61,26:61:2167:26:924:-57.288,0,-168.612	0/0:137:137,0:137:4876:0:0:0,-41.2411,-438.372	0/0:262:259,3:259:9273:3:108:0,-68.8839,-823.653	0/0:123:123,0:123:4411:0:0:0,-37.0267,-397.156	0/1:17:15,2:15:536:2:72:-1.71921,0,-43.4481	0/0:100:100,0:100:3582:0:0:0,-30.103,-322.568	0/0:68:68,0:68:2431:0:0:0,-20.47,-218.668	0/1:22:14,8:14:486:8:284:-19.2765,0,-37.4453	0/1:223:119,104:119:4272:104:3687:-264.871,0,-317.413	0/1:71:40,31:40:1425:31:1112:-79.0182,0,-107.138	0/1:202:90,112:90:3232:112:3965:-296.192,0,-229.02	0/0:250:250,0:250:8945:0:0:0,-75.2575,-804.975	0/0:224:224,0:224:8011:0:0:0,-67.4307,-719.441	0/0:167:167,0:167:5992:0:0:0,-50.272,-539.107	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:205:205,0:205:7345:0:0:0,-61.7111,-660.287	0/0:184:183,1:183:6572:1:25:0,-52.8963,-588.83	0/0:454:454,0:454:16242:0:0:0,-136.668,-1458.38	0/1:103:48,55:48:1728:55:1941:-142.874,0,-124.766	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.526	0/1:85:40,45:40:1436:45:1608:-119.418,0,-103.948	0/1:160:73,87:73:2620:87:3106:-231.587,0,-187.873	0/1:50:22,28:22:788:28:1008:-75.9849,0,-56.1851	0/0:74:74,0:74:2624:0:0:0,-22.2762,-236.271	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.398	0/1:31:16,15:16:561:15:524:-38.1564,0,-41.4759	0/1:108:56,52:56:1980:52:1860:-135.142,0,-145.782	0/1:81:28,53:28:1004:53:1904:-147.25,0,-66.2924	0/0:222:222,0:222:7958:0:0:0,-66.8287,-715.853	0/0:105:105,0:105:3763:0:0:0,-31.6081,-338.383
chr06	13538268	.	A	G	207539	PASS	AB=0.503573;ABP=3.63094;AC=139;AF=0.739362;AN=188;AO=9762;CIGAR=1X;DP=12557;DPB=12557;DPRA=0;EPP=21183.6;EPPR=6052.74;GTI=3;LEN=1;MEANALT=1.05319;MQM=59.5517;MQMR=59.7387;NS=94;NUMALT=1;ODDS=7.69929;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=348107;QR=99607;RO=2790;RPL=6;RPP=21148.8;RPPR=6044.06;RPR=9756;RUN=1;SAF=4;SAP=21166.2;SAR=9758;SRF=1;SRP=6052.74;SRR=2789;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:38,32:38:1340:32:1135:-81.2504,0,-99.8243	0/1:198:90,108:90:3215:108:3813:-283.519,0,-229.952	0/1:184:93,90:93:3318:90:3196:-231.55,0,-243.174	1/1:246:0,246:0:0:246:8786:-790.528,-74.0534,0	1/1:149:0,149:0:0:149:5312:-478.174,-44.8535,0	1/1:67:0,67:0:0:67:2356:-212.275,-20.169,0	1/1:185:1,184:1:36:184:6559:-586.339,-52.0923,0	0/1:151:71,80:71:2544:80:2841:-210.431,0,-183.739	0/1:134:50,84:50:1784:84:2996:-229.026,0,-120.476	0/1:140:83,57:83:2950:57:2016:-139.077,0,-223.578	0/1:46:26,20:26:923:20:711:-50.4683,0,-69.5394	1/1:77:0,77:0:0:77:2749:-247.581,-23.1793,0	0/1:54:35,19:35:1260:19:684:-45.6347,0,-97.4499	0/1:68:37,31:37:1315:31:1107:-79.4563,0,-98.181	1/1:68:0,68:0:0:68:2415:-217.599,-20.47,0	0/1:63:31,32:31:1093:32:1150:-84.5698,0,-79.7128	0/1:62:26,36:26:932:36:1271:-95.9942,0,-65.535	1/1:59:0,59:0:0:59:2116:-190.692,-17.7608,0	1/1:24:1,23:1:36:23:805:-69.161,-3.62645,0	0/1:281:115,166:115:4111:166:5937:-449.838,0,-285.302	0/1:216:109,107:109:3883:107:3823:-279.146,0,-284.509	1/1:137:0,137:0:0:137:4897:-440.875,-41.2411,0	0/1:79:45,34:45:1620:34:1211:-85.4677,0,-122.297	0/1:173:94,79:94:3380:79:2832:-203.036,0,-252.319	0/1:105:56,49:56:1976:49:1756:-125.782,0,-146.5	1/1:478:0,478:0:0:478:16996:-1527.99,-143.892,0	1/1:318:3,314:3:108:314:11220:-999.544,-85.7112,0	1/1:34:0,34:0:0:34:1220:-110.102,-10.235,0	0/1:524:272,252:272:9734:252:8983:-649.623,0,-718.257	0/1:211:100,111:100:3550:111:3980:-294.516,0,-256.175	0/1:171:83,88:83:2967:88:3161:-233.235,0,-215.782	1/1:10:0,10:0:0:10:343:-31.2006,-3.0103,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:14:5,9:5:180:9:315:-24.4728,0,-12.3376	1/1:12:0,12:0:0:12:432:-39.176,-3.61236,0	0/1:223:108,115:108:3875:115:4116:-303.471,0,-281.803	1/1:347:2,345:2:72:345:12278:-1097.89,-97.6207,0	0/1:64:28,36:28:1000:36:1281:-96.2234,0,-71.0413	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:159:0,159:0:0:159:5649:-508.323,-47.8638,0	1/1:36:0,36:0:0:36:1270:-114.597,-10.8371,0	0/1:185:71,114:71:2534:114:4057:-309.605,0,-172.61	0/1:124:62,62:62:2223:62:2228:-162.829,0,-163.006	0/1:86:38,48:38:1368:48:1699:-127.304,0,-97.5299	1/1:105:0,105:0:0:105:3759:-338.49,-31.6082,0	0/1:186:82,104:82:2925:104:3740:-280.676,0,-207.431	1/1:269:0,269:0:0:269:9549:-858.759,-80.9771,0	1/1:184:0,184:0:0:184:6569:-591.275,-55.3895,0	0/1:171:103,68:103:3673:68:2440:-168.376,0,-279.234	1/1:252:0,252:0:0:252:9024:-812.128,-75.8596,0	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4425	1/1:200:0,200:0:0:200:7162:-644.538,-60.206,0	0/1:29:13,16:13:468:16:554:-41.3662,0,-33.7298	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.7437	0/1:218:122,95:122:4345:95:3392:-239.776,0,-325.52	1/1:57:0,57:0:0:57:2016:-180.907,-17.1587,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:16:1,15:1:36:15:503:-41.9886,-1.21821,0	0/1:85:52,33:52:1855:33:1184:-80.478,0,-141.013	1/1:121:1,120:1:36:120:4297:-383.301,-32.8264,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:369:0,369:0:0:369:13195:-1186.12,-111.08,0	1/1:245:1,244:1:36:244:8665:-775.905,-70.1541,0	0/1:86:26,60:26:936:60:2136:-166.583,0,-58.6709	1/1:136:0,135:0:0:135:4799:-431.631,-40.6391,0	1/1:265:3,262:3:108:262:9373:-832.395,-69.787,0	1/1:121:0,120:0:0:120:4304:-387.173,-36.1236,0	0/1:17:2,15:2:72:15:525:-42.4564,0,-1.71921	1/1:99:0,99:0:0:99:3548:-319.511,-29.802,0	1/1:69:0,69:0:0:69:2458:-221.099,-20.7711,0	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9388	0/1:221:102,119:102:3639:119:4241:-315.266,0,-261.169	0/1:73:31,42:31:1112:42:1493:-112.658,0,-78.4162	0/1:202:110,92:110:3921:92:3287:-234.536,0,-292.237	1/1:250:0,250:0:0:250:8928:-803.443,-75.2575,0	1/1:225:0,225:0:0:225:8000:-718.986,-67.7318,0	1/1:163:0,163:0:0:163:5823:-524.042,-49.0679,0	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	1/1:206:0,206:0:0:206:7368:-662.314,-62.0122,0	1/1:187:0,187:0:0:187:6660:-599.412,-56.2926,0	1/1:451:0,451:0:0:451:16038:-1440.43,-135.765,0	0/1:103:55,48:55:1963:48:1702:-122.425,0,-144.831	1/1:65:0,65:0:0:65:2340:-210.369,-19.567,0	0/1:85:45,40:45:1600:40:1436:-103.948,0,-118.699	0/1:161:88,73:88:3120:73:2608:-186.492,0,-232.547	0/1:48:26,22:26:932:22:792:-57.148,0,-69.7494	1/1:71:0,71:0:0:71:2544:-229.075,-21.3731,0	1/1:77:0,77:0:0:77:2741:-246.249,-23.1793,0	0/1:31:15,16:15:536:16:576:-42.8338,0,-39.2383	0/1:109:54,55:54:1924:55:1963:-143.965,0,-140.598	0/1:80:52,28:52:1855:28:1000:-66.233,0,-143.144	1/1:222:0,222:0:0:222:7909:-711.565,-66.8287,0	1/1:105:0,105:0:0:105:3724:-334.756,-31.6082,0
chr06	13538293	.	A	C	46701.4	PASS	AB=0.496686;ABP=3.54276;AC=49;AF=0.260638;AN=188;AO=2784;CIGAR=1X;DP=12518;DPB=12518;DPRA=0.827787;EPP=6048.39;EPPR=21027.3;GTI=3;LEN=1;MEANALT=1.03571;MQM=59.7209;MQMR=59.5779;NS=94;NUMALT=1;ODDS=7.56204;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99548;QR=347887;RO=9730;RPL=2784;RPP=6048.39;RPPR=21027.3;RPR=0;RUN=1;SAF=0;SAP=6048.39;SAR=2784;SRF=0;SRP=21131.4;SRR=9730;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:32,38:32:1136:38:1359:-101.538,0,-81.3817	0/1:196:108,88:108:3868:88:3129:-222.818,0,-289.088	0/1:183:89,94:89:3179:94:3357:-247.05,0,-230.809	0/0:243:243,0:243:8653:0:0:0,-73.1503,-778.587	0/0:149:148,1:148:5288:1:36:0,-41.2552,-472.313	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.185	0/0:187:186,1:186:6652:1:36:0,-52.6943,-594.697	0/1:152:80,72:80:2863:72:2552:-184.161,0,-212.109	0/1:130:83,47:83:2963:47:1684:-112.685,0,-227.748	0/1:141:57,83:57:2032:83:2957:-223.889,0,-140.281	0/1:45:20,25:20:720:25:896:-67.414,0,-51.5824	0/0:77:77,0:77:2768:0:0:0,-23.1793,-248.858	0/1:54:19,35:19:684:35:1260:-97.4499,0,-45.6347	0/1:67:30,37:30:1076:37:1328:-99.6532,0,-76.97	0/0:67:67,0:67:2384:0:0:0,-20.169,-214.809	0/1:61:30,31:30:1080:31:1116:-82.3889,0,-78.7749	0/1:64:38,26:38:1360:26:936:-65.2935,0,-103.379	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.173	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4751	0/1:281:169,112:169:6046:112:3962:-272.002,0,-459.637	0/1:223:112,111:112:3991:111:3988:-291.715,0,-292.046	0/0:136:136,0:136:4871:0:0:0,-40.9401,-438.508	0/1:80:34,46:34:1216:46:1656:-125.234,0,-85.6137	0/1:176:80,96:80:2868:96:3436:-256.4,0,-205.371	0/1:102:48,54:48:1711:54:1936:-143.807,0,-122.774	0/0:476:476,0:476:17051:0:0:0,-143.29,-1533.4	0/0:317:314,3:314:11197:3:108:0,-85.3513,-997.432	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.102	0/1:523:252,271:252:8973:271:9728:-717.947,0,-649.64	0/1:209:109,100:109:3899:100:3565:-258.128,0,-288.149	0/1:173:87,86:87:3103:86:3069:-224.354,0,-227.413	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:14:9,5:9:312:5:180:-12.3376,0,-24.2009	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:222:115,107:115:4136:107:3839:-278.865,0,-305.569	0/0:351:350,0:350:12504:0:0:0,-105.36,-1124.72	0/1:62:35,27:35:1251:27:972:-69.1259,0,-93.9276	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:158:158,0:158:5644:0:0:0,-47.5627,-507.976	0/0:37:37,0:37:1332:0:0:0,-11.1381,-119.687	0/1:183:113,70:113:4039:70:2504:-170.513,0,-308.587	0/1:122:62,60:62:2228:60:2156:-157.581,0,-163.431	0/1:87:48,39:48:1703:39:1396:-99.7471,0,-127.363	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.467	0/1:186:103,83:103:3696:83:2950:-209.679,0,-276.804	0/0:268:268,0:268:9580:0:0:0,-80.676,-861.418	0/0:181:181,0:181:6483:0:0:0,-54.4864,-583.533	0/1:167:65,102:65:2324:102:3640:-277.471,0,-159.146	0/0:248:248,0:248:8867:0:0:0,-74.6554,-798.006	0/1:7:2,5:2:72:5:165:-13.064,0,-4.72951	0/0:200:199,0:199:7111:0:0:0,-59.905,-639.757	0/1:28:15,13:15:527:13:468:-34.0308,0,-39.3304	0/1:15:7,8:7:252:8:288:-21.7437,0,-18.5135	0/1:217:94,123:94:3363:123:4412:-331.906,0,-237.472	0/0:55:55,0:55:1968:0:0:0,-16.5566,-176.611	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:16:15,1:15:532:1:36:0,-1.2182,-44.613	0/1:84:31,53:31:1112:53:1888:-144.72,0,-74.3037	0/0:121:120,1:120:4312:1:36:0,-32.8264,-384.649	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:374:374,0:374:13362:0:0:0,-112.585,-1200.39	0/0:244:243,1:243:8695:1:36:0,-69.853,-778.403	0/1:87:61,26:61:2188:26:936:-58.3699,0,-170.991	0/0:135:135,0:135:4813:0:0:0,-40.639,-432.902	0/0:262:259,3:259:9232:3:108:0,-68.8839,-820.128	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.011	0/1:17:15,2:15:536:2:72:-1.71921,0,-43.4481	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.031	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.119	0/1:22:14,8:14:496:8:273:-18.2705,0,-38.3516	0/1:221:118,103:118:4199:103:3684:-265.201,0,-311.478	0/1:73:41,31:41:1464:31:1116:-78.7196,0,-110.008	0/1:200:90,110:90:3200:110:3929:-293.549,0,-226.991	0/0:247:247,0:247:8824:0:0:0,-74.3544,-794.099	0/0:221:221,0:221:7899:0:0:0,-66.5276,-709.304	0/0:166:166,0:166:5948:0:0:0,-49.971,-534.991	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:206:206,0:206:7345:0:0:0,-62.0122,-660.166	0/0:183:183,0:183:6548:0:0:0,-55.0885,-589.215	0/0:449:449,0:449:16046:0:0:0,-135.162,-1440.83	0/1:100:48,52:48:1724:52:1858:-136.828,0,-125.338	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.245	0/1:85:40,45:40:1440:45:1620:-120.498,0,-104.308	0/1:161:72,89:72:2552:89:3195:-239.291,0,-181.454	0/1:50:22,28:22:792:28:980:-73.4587,0,-56.546	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.753	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.253	0/1:30:16,14:16:572:14:500:-36.3053,0,-42.7733	0/1:106:54,52:54:1931:52:1864:-136.103,0,-142.091	0/1:82:28,54:28:1004:54:1921:-148.476,0,-65.9914	0/0:220:220,0:220:7896:0:0:0,-66.2266,-710.429	0/0:104:104,0:104:3731:0:0:0,-31.3071,-335.114
chr06	13612257	.	G	C	15256.9	PASS	AB=0.527357;ABP=14.1786;AC=47;AF=0.25;AN=188;AO=914;CIGAR=1X;DP=3490;DPB=3490;DPRA=1.23718;EPP=1987.74;EPPR=5585.87;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9103;MQMR=53.8124;NS=94;NUMALT=1;ODDS=0.117182;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32659;QR=91850;RO=2575;RPL=0;RPP=1987.74;RPPR=5585.87;RPR=914;RUN=1;SAF=0;SAP=1987.74;SAR=914;SRF=0;SRP=5594.55;SRR=2575;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:28,14:28:995:14:500:-32.6925,0,-77.1271	0/1:30:11,19:11:392:19:676:-52.1371,0,-26.5436	0/1:47:30,17:30:1076:17:597:-39.9077,0,-82.9012	0/0:79:79,0:79:2832:0:0:0,-23.7814,-254.728	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.368	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.5482	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.167	0/1:45:17,28:17:612:28:996:-76.4004,0,-41.8052	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.8236	0/1:27:11,16:11:392:16:576:-44.0472,0,-27.444	0/1:36:14,22:14:504:22:777:-59.4133,0,-34.7962	0/0:46:46,0:46:1622:0:0:0,-13.8474,-145.669	0/1:42:20,22:20:707:22:788:-58.6015,0,-51.2061	0/1:59:28,31:28:1008:31:1112:-82.6306,0,-73.048	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.6082	0/1:25:17,8:17:590:8:288:-18.7417,0,-45.8313	0/1:25:8,17:8:288:17:612:-47.8877,0,-18.7146	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.8308	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.774	0/1:31:15,16:15:536:16:576:-42.8397,0,-39.1678	0/1:48:28,20:28:987:20:716:-50.3183,0,-74.5482	0/0:40:40,0:40:1424:0:0:0,-12.0412,-127.815	0/1:51:18,33:18:644:33:1184:-91.5158,0,-42.8623	0/1:35:11,24:11:388:24:864:-67.5432,0,-24.5949	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2009	0/0:85:85,0:85:3026:0:0:0,-25.5875,-271.089	0/0:80:79,1:79:2829:1:36:0,-20.4841,-250.702	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.1286	0/1:64:18,46:18:640:46:1622:-126.999,0,-38.569	0/1:37:18,19:18:648:19:684:-50.7522,0,-47.4201	0/1:59:33,25:33:1188:25:896:-63.1408,0,-88.714	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4761	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.1189	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59457	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0648	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.6908	0/1:125:53,72:53:1892:72:2560:-193.02,0,-132.624	0/0:41:41,0:41:1464:0:0:0,-12.3422,-131.885	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.5788	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.69137	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.3445	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.3888	0/1:93:51,42:51:1820:42:1499:-107.208,0,-135.803	0/1:21:10,11:10:347:11:396:-29.6611,0,-25.1958	0/1:27:16,11:16:563:11:396:-27.8549,0,-42.8034	0/0:75:75,0:75:2688:0:0:0,-22.5772,-241.811	0/1:25:8,17:8:288:17:608:-47.5263,0,-18.7146	0/0:126:125,1:125:4432:1:36:0,-34.3315,-394.685	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.297	0/1:43:21,22:21:756:22:788:-58.3005,0,-55.3189	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.062	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.406	0/1:24:12,12:12:428:12:432:-31.9965,0,-31.5691	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.51835	0/1:52:23,29:23:820:29:1020:-76.2689,0,-58.3315	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.0628	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3217	0/1:47:26,21:26:932:21:756:-54.2188,0,-69.8968	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.545	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/0:33:33,0:33:1175:0:0:0,-9.93399,-105.912	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.674	0/1:31:18,13:18:639:13:449:-31.4056,0,-47.7239	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.7713	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.29	0/0:67:67,0:67:2387:0:0:0,-20.169,-214.759	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.8409	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.268	0/0:41:41,0:41:1476:0:0:0,-12.3422,-132.934	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.2547	0/1:42:23,19:23:806:19:684:-49.2471,0,-60.1055	0/1:52:13,39:13:464:39:1392:-109.925,0,-26.3355	0/1:62:27,35:27:964:35:1252:-94.3212,0,-68.2789	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.274	0/0:37:37,0:37:1309:0:0:0,-11.1381,-117.966	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7701	0/1:6:3,3:3:108:3:104:-7.89663,0,-7.68572	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.5733	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7652	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.652	0/1:39:22,17:22:788:17:608:-43.3119,0,-59.4059	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.664	0/1:15:7,8:7:252:8:288:-21.752,0,-18.4809	0/1:77:38,39:38:1364:39:1395:-102.669,0,-99.7156	0/1:11:5,6:5:180:6:216:-16.4652,0,-13.2237	0/0:49:49,0:49:1743:0:0:0,-14.7505,-156.791	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.475	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.6773	0/1:72:46,26:46:1644:26:936:-62.8853,0,-126.331	0/1:33:9,24:9:324:24:860:-67.7878,0,-19.53	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.13	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.003
chr06	13650868	.	C	A	31545.9	PASS	AB=0.502816;ABP=3.2671;AC=48;AF=0.255319;AN=188;AO=1887;CIGAR=1X;DP=7823;DPB=7823;DPRA=0.958899;EPP=4091.9;EPPR=12773.7;GTI=1;LEN=1;MEANALT=1.03448;MQM=59.9825;MQMR=59.9874;NS=94;NUMALT=1;ODDS=0.487455;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67340;QR=212423;RO=5933;RPL=1;RPP=4091.9;RPPR=12773.7;RPR=1886;RUN=1;SAF=0;SAP=4100.58;SAR=1887;SRF=0;SRP=12886.4;SRR=5933;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:107:58,49:58:2073:49:1746:-125.212,0,-154.628	0/1:79:40,39:40:1425:39:1404:-102.878,0,-104.764	0/0:188:188,0:188:6748:0:0:0,-56.5936,-607.392	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:109:49,60:49:1760:60:2140:-160.056,0,-125.872	0/1:88:45,43:45:1597:43:1536:-112.042,0,-117.528	0/1:76:28,48:28:1008:48:1724:-132.567,0,-68.1581	0/1:47:25,22:25:900:22:770:-55.4709,0,-67.1711	0/0:109:108,1:108:3880:1:28:0,-30.0144,-346.595	0/1:64:36,28:36:1288:28:1000:-71.0495,0,-96.9577	0/1:68:38,30:38:1360:30:1076:-76.6828,0,-102.231	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:49:26,23:26:936:23:819:-59.2811,0,-69.809	0/1:59:36,23:36:1277:23:815:-55.91,0,-97.4703	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.678	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:134:73,61:73:2624:61:2192:-157.207,0,-196.069	0/1:215:110,105:110:3944:105:3742:-272.152,0,-290.43	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:144:82,62:82:2925:62:2219:-156.626,0,-220.049	0/1:58:37,21:37:1320:21:756:-50.9075,0,-101.642	0/1:69:34,35:34:1224:35:1240:-91.1334,0,-89.696	0/0:272:272,0:272:9714:0:0:0,-81.8802,-874.052	0/0:148:147,1:147:5280:1:36:0,-40.9542,-471.735	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:219:117,101:117:4204:101:3609:-259.03,0,-312.555	0/1:101:56,45:56:2016:45:1620:-115.686,0,-151.309	0/1:79:40,39:40:1432:39:1389:-101.526,0,-105.396	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:218:96,122:96:3424:122:4346:-325.691,0,-242.748	0/0:163:162,1:162:5794:1:36:0,-45.4696,-517.973	0/1:54:28,26:28:1000:26:927:-67.4917,0,-74.0598	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:87:87,0:87:3093:0:0:0,-26.1896,-278.597	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:100:51,49:51:1824:49:1764:-128.941,0,-134.338	0/1:111:48,63:48:1724:63:2255:-169.798,0,-122.031	0/1:85:43,42:43:1544:42:1491:-108.896,0,-113.666	0/0:95:95,0:95:3401:0:0:0,-28.5978,-306.303	0/1:111:52,59:52:1830:59:2124:-158.014,0,-131.563	0/0:162:162,0:162:5786:0:0:0,-48.7669,-520.852	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:122:67,55:67:2399:55:1972:-141.029,0,-179.44	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.554	0/1:61:27,34:27:968:34:1204:-90.303,0,-69.0745	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:102:35,67:35:1233:67:2372:-183.031,0,-80.567	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:50:22,28:22:792:28:1004:-75.6244,0,-56.5542	0/0:110:109,0:109:3912:0:0:0,-32.8123,-351.912	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:192:192,0:192:6888:0:0:0,-57.7978,-619.986	0/0:238:238,0:238:8518:0:0:0,-71.6451,-766.616	0/1:76:38,37:38:1364:37:1317:-95.8929,0,-100.124	0/0:73:72,1:72:2580:1:36:0,-18.3769,-228.851	0/0:179:178,1:178:6369:1:36:0,-50.2861,-569.7	0/0:93:91,2:91:3272:2:72:0,-21.1591,-287.862	0/0:38:37,1:37:1332:1:36:0,-7.84086,-116.584	0/0:65:64,1:64:2277:1:36:0,-15.9687,-201.222	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/1:58:21,37:21:752:37:1320:-101.642,0,-50.5465	0/1:74:31,43:31:1101:43:1544:-116.977,0,-77.1221	0/1:86:46,40:46:1633:40:1413:-101.578,0,-121.368	0/0:160:160,0:160:5733:0:0:0,-48.1648,-516.084	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.924	0/0:84:83,1:83:2984:1:36:0,-21.6882,-265.193	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:175:175,0:175:6273:0:0:0,-52.6802,-564.661	0/1:76:40,36:40:1440:36:1288:-93.3453,0,-107.019	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:83:39,44:39:1400:44:1575:-117.055,0,-101.314	0/1:131:75,56:75:2677:56:2004:-141.199,0,-201.739	0/1:39:17,22:17:612:22:779:-58.6919,0,-43.6733	0/0:68:66,2:66:2368:2:61:0,-14.6771,-207.585	0/0:86:86,0:86:3058:0:0:0,-25.8886,-275.447	0/1:35:15,20:15:540:20:695:-52.3331,0,-38.4005	0/1:110:61,49:61:2177:49:1741:-123.859,0,-163.081	0/1:107:37,70:37:1324:70:2487:-191.87,0,-87.2519	0/0:86:86,0:86:3081:0:0:0,-25.8886,-277.516	0/0:99:99,0:99:3541:0:0:0,-29.802,-318.897
chr06	13650869	.	C	T	124195	PASS	AB=0.4965;ABP=3.40554;AC=138;AF=0.741935;AN=186;AO=5866;CIGAR=1X;DP=7745;DPB=7745;DPRA=0;EPP=12447.3;EPPR=4048.54;GTI=1;LEN=1;MEANALT=1;MQM=59.9775;MQMR=60;NS=93;NUMALT=1;ODDS=0.711495;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208097;QR=67162;RO=1879;RPL=34;RPP=12447.3;RPPR=4048.54;RPR=5832;RUN=1;SAF=0;SAP=12740.9;SAR=5866;SRF=0;SRP=4083.21;SRR=1879;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:6,8:6:216:8:280:-21.3249,0,-15.5761	0/1:107:47,60:47:1665:60:2131:-159.848,0,-117.925	0/1:81:41,40:41:1472:40:1428:-104.434,0,-108.393	1/1:185:0,185:0:0:185:6564:-590.85,-55.6906,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:62:0,62:0:0:62:2174:-195.924,-18.6639,0	0/1:107:58,49:58:2076:49:1736:-124.314,0,-154.9	0/1:83:41,42:41:1472:42:1469:-107.517,0,-107.791	0/1:72:46,26:46:1652:26:936:-62.8853,0,-127.294	0/1:48:22,26:22:784:26:902:-67.0413,0,-56.4345	1/1:108:0,108:0:0:108:3852:-346.875,-32.5112,0	0/1:63:26,37:26:917:37:1311:-99.326,0,-63.8797	0/1:67:29,38:29:1032:38:1364:-102.892,0,-73.0245	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:49:23,26:23:828:26:932:-69.4484,0,-60.0936	0/1:58:22,36:22:780:36:1288:-98.7638,0,-53.0633	1/1:47:0,47:0:0:47:1668:-150.405,-14.1484,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:136:62,74:62:2216:74:2636:-196.548,0,-158.765	0/1:213:107,106:107:3816:106:3778:-276.101,0,-279.517	1/1:98:0,98:0:0:98:3472:-312.695,-29.5009,0	0/1:142:60,82:60:2143:82:2915:-219.803,0,-150.391	0/1:57:21,36:21:756:36:1269:-97.3529,0,-51.2085	0/1:69:35,34:35:1256:34:1212:-88.6153,0,-92.5742	1/1:272:0,272:0:0:272:9612:-864.957,-81.8802,0	1/1:145:1,144:1:36:144:5105:-455.996,-40.0511,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	0/1:217:103,114:103:3685:114:4012:-295.953,0,-266.528	0/1:103:45,58:45:1612:58:2068:-155.385,0,-114.364	0/1:84:40,44:40:1436:44:1542:-113.782,0,-104.251	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0812	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:212:116,96:116:4163:96:3428:-244.908,0,-311.033	1/1:157:1,156:1:36:156:5517:-493.064,-43.6634,0	0/1:55:27,28:27:972:28:992:-73.0377,0,-71.2413	.:.:.:.:.:.:.:.	1/1:86:0,86:0:0:86:3045:-274.28,-25.8886,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:99:50,49:50:1800:49:1740:-127.083,0,-132.48	0/1:113:65,48:65:2298:48:1720:-121.069,0,-173.062	0/1:86:42,44:42:1508:44:1572:-115.883,0,-110.126	1/1:89:0,89:0:0:89:3160:-284.627,-26.7917,0	0/1:113:60,53:60:2152:53:1892:-136.542,0,-159.931	1/1:158:0,158:0:0:158:5599:-504.037,-47.5627,0	1/1:64:0,64:0:0:64:2248:-202.585,-19.2659,0	0/1:117:53,64:53:1908:64:2287:-170.871,0,-136.777	1/1:80:0,80:0:0:80:2793:-251.613,-24.0824,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:61:0,61:0:0:61:2148:-193.587,-18.3628,0	0/1:61:33,28:33:1180:28:1000:-71.9525,0,-88.1452	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:98:68,30:68:2428:30:1068:-66.9311,0,-189.275	1/1:56:0,56:0:0:56:1968:-177.396,-16.8577,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:51:28,23:28:981:23:820:-58.77,0,-73.2485	1/1:107:0,107:0:0:107:3815:-343.548,-32.2102,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:186:0,186:0:0:186:6538:-588.514,-55.9916,0	1/1:230:0,230:0:0:230:8172:-735.503,-69.2369,0	0/1:78:38,40:38:1356:40:1394:-102.273,0,-98.8601	1/1:73:1,72:1:36:72:2539:-225.164,-18.3769,0	1/1:181:1,180:1:36:180:6414:-573.754,-50.8882,0	1/1:93:2,91:2:72:91:3233:-284.355,-21.1591,0	1/1:39:1,38:1:36:38:1355:-118.651,-8.1419,0	1/1:65:1,64:1:36:64:2296:-202.933,-15.9687,0	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:58:36,22:36:1292:22:772:-52.3415,0,-99.124	0/1:70:41,29:41:1472:29:1021:-71.1282,0,-111.704	0/1:84:38,46:38:1356:46:1632:-121.882,0,-97.054	1/1:160:0,160:0:0:160:5680:-511.325,-48.1648,0	1/1:68:0,68:0:0:68:2416:-217.697,-20.47,0	1/1:84:1,83:1:36:83:2960:-263.036,-21.6882,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:102:0,102:0:0:102:3619:-325.919,-30.7051,0	1/1:85:0,85:0:0:85:3024:-272.392,-25.5876,0	1/1:175:0,175:0:0:175:6145:-553.158,-52.6803,0	0/1:76:36,40:36:1276:40:1428:-105.939,0,-92.2648	1/1:68:0,68:0:0:68:2424:-218.416,-20.47,0	0/1:86:47,39:47:1680:39:1396:-100.051,0,-125.599	0/1:128:53,75:53:1896:75:2676:-202.554,0,-132.386	0/1:39:22,17:22:773:17:608:-43.3119,0,-58.1493	1/1:69:0,69:0:0:69:2445:-220.305,-20.7711,0	1/1:84:0,84:0:0:84:2993:-269.602,-25.2865,0	0/1:35:20,15:20:716:15:540:-38.4005,0,-54.2317	0/1:114:53,61:53:1891:61:2181:-162.238,0,-136.15	0/1:107:71,36:71:2522:36:1273:-82.6607,0,-195.021	1/1:84:0,84:0:0:84:2938:-264.654,-25.2865,0	1/1:98:0,98:0:0:98:3482:-313.591,-29.5009,0
chr06	13766090	.	G	A	24481.3	PASS	AB=0.536633;ABP=32.9201;AC=46;AF=0.244681;AN=188;AO=1397;CIGAR=1X;DP=5559;DPB=5559;DPRA=1.02122;EPP=2798.23;EPPR=8497.41;GTI=0;LEN=1;MEANALT=1;MQM=49.0465;MQMR=42.4661;NS=94;NUMALT=1;ODDS=1.17188;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50017;QR=148378;RO=4160;RPL=1369;RPP=2798.23;RPPR=8497.41;RPR=28;RUN=1;SAF=1397;SAP=3036.56;SAR=0;SRF=4160;SRP=9036.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:10,7:10:356:7:252:-17.7866,0,-26.6777	0/1:59:26,33:26:932:33:1188:-88.8865,0,-64.8025	0/1:85:39,46:39:1404:46:1639:-120.95,0,-97.4703	0/0:126:126,0:126:4502:0:0:0,-37.9298,-393.023	0/0:52:49,3:49:1760:3:108:0,-6.2739,-145.021	0/0:22:22,0:22:783:0:0:0,-6.62266,-69.1595	0/0:77:77,0:77:2743:0:0:0,-23.1793,-238.732	0/1:72:39,33:39:1363:33:1172:-83.5805,0,-99.0426	0/1:94:34,60:34:1211:60:2152:-164.633,0,-77.8028	0/1:39:20,19:20:716:19:684:-49.8883,0,-50.9551	0/1:30:13,17:13:464:17:604:-45.4417,0,-32.2489	0/0:78:78,0:78:2743:0:0:0,-23.4803,-242.751	0/1:74:37,37:37:1276:37:1324:-96.5771,0,-89.2636	0/1:37:18,19:18:648:19:684:-50.325,0,-45.7082	0/0:63:63,0:63:2250:0:0:0,-18.9649,-197.498	0/1:51:15,36:15:540:36:1286:-99.5326,0,-32.124	0/1:19:8,11:8:288:11:396:-30.0681,0,-20.0543	0/0:15:15,0:15:532:0:0:0,-4.51545,-45.8391	0/0:37:37,0:37:1311:0:0:0,-11.1381,-115.451	0/1:102:56,46:56:2008:46:1633:-115.027,0,-145.711	0/1:106:58,48:58:2063:48:1718:-120.943,0,-149.502	0/0:57:57,0:57:2048:0:0:0,-17.1587,-178.235	0/1:51:16,35:16:572:35:1248:-95.4509,0,-35.1248	0/1:19:8,11:8:288:11:396:-30.0148,0,-19.9838	0/1:60:27,33:27:968:33:1180:-87.7326,0,-67.5307	0/0:131:130,0:130:4632:0:0:0,-39.1339,-402.689	0/0:124:124,0:124:4428:0:0:0,-37.3277,-385.661	0/0:27:27,0:27:959:0:0:0,-8.12781,-84.5312	0/1:109:54,55:54:1932:55:1972:-144.504,0,-132.615	0/1:72:28,44:28:1004:44:1580:-119.859,0,-66.5287	0/1:55:22,33:22:788:33:1184:-89.7253,0,-52.9223	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.52101	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.5496	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.0277	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.2677	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.68992	0/1:160:75,85:75:2653:85:3039:-224.122,0,-182.843	0/0:82:82,0:82:2940:0:0:0,-24.6845,-258.209	0/1:40:18,22:18:640:22:788:-58.1042,0,-44.8358	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.52101	0/0:75:75,0:75:2680:0:0:0,-22.5772,-235.936	0/0:25:25,0:25:892:0:0:0,-7.52575,-78.5917	0/1:95:38,57:38:1352:57:2052:-152.97,0,-89.9279	0/1:43:23,20:23:819:20:720:-51.9218,0,-59.1737	0/1:51:24,27:24:864:27:972:-71.8726,0,-60.72	0/0:63:63,0:63:2242:0:0:0,-18.9649,-194.957	0/1:86:37,49:37:1324:49:1756:-131.626,0,-90.6526	0/0:111:111,0:111:3963:0:0:0,-33.4143,-346.687	0/0:59:59,0:59:2120:0:0:0,-17.7608,-186.156	0/1:52:24,28:24:860:28:1004:-74.6453,0,-60.1303	0/0:157:153,4:153:5467:4:144:0,-33.9816,-458.586	0/1:5:2,3:2:72:3:108:-8.52739,0,-5.14998	0/0:87:87,0:87:3102:0:0:0,-26.1896,-272.865	0/1:30:11,19:11:396:19:672:-51.5975,0,-25.7961	0/1:5:4,1:4:144:1:36:-2.07362,0,-11.5226	0/1:92:41,51:41:1472:51:1824:-135.469,0,-102.455	0/0:18:18,0:18:640:0:0:0,-5.41854,-56.4874	0/1:3:1,2:1:36:2:72:-5.91853,0,-2.57761	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.4459	0/1:58:31,27:31:1099:27:963:-68.1402,0,-79.7668	0/0:80:78,2:78:2782:2:72:0,-17.2746,-235.379	0/1:7:3,4:3:104:4:144:-11.1501,0,-7.37922	0/0:158:158,0:158:5667:0:0:0,-47.5627,-490.331	0/0:89:85,4:85:3044:4:144:0,-13.5344,-252.695	0/1:42:22,20:22:792:20:720:-52.0359,0,-57.4947	0/0:48:48,0:48:1720:0:0:0,-14.4494,-149.285	0/0:60:57,3:57:2040:3:108:0,-8.02926,-169.099	0/0:98:97,1:97:3468:1:36:0,-25.9179,-299.099	0/0:17:17,0:17:608:0:0:0,-5.11751,-53.9027	0/0:43:43,0:43:1531:0:0:0,-12.9443,-133.95	0/0:41:41,0:41:1446:0:0:0,-12.3422,-126.344	0/1:10:8,2:8:265:2:72:-3.79749,0,-20.7207	0/1:103:40,63:40:1428:63:2260:-170.963,0,-93.6898	0/1:98:49,49:49:1748:49:1756:-127.985,0,-125.104	0/1:65:25,40:25:892:40:1427:-107.494,0,-59.4667	0/0:116:116,0:116:4137:0:0:0,-34.9195,-362.003	0/0:51:51,0:51:1824:0:0:0,-15.3525,-161.014	0/0:61:58,3:58:2060:3:104:0,-8.7038,-171.068	0/1:13:10,3:10:360:3:108:-6.10716,0,-28.1981	0/0:93:93,0:93:3336:0:0:0,-27.9958,-292.793	0/0:45:45,0:45:1608:0:0:0,-13.5463,-140.537	0/0:129:129,0:129:4576:0:0:0,-38.8329,-398.014	0/1:52:24,28:24:847:28:1004:-74.3391,0,-58.5982	0/0:37:37,0:37:1316:0:0:0,-11.1381,-115.149	0/1:28:5,23:5:180:23:808:-64.3218,0,-7.70042	0/1:118:74,44:74:2634:44:1576:-106.031,0,-193.606	0/1:17:9,8:9:324:8:288:-21.0075,0,-23.7548	0/0:65:65,0:65:2316:0:0:0,-19.5669,-204.108	0/0:47:47,0:47:1676:0:0:0,-14.1484,-146.879	0/1:20:13,7:13:464:7:252:-16.8494,0,-35.2582	0/1:52:29,23:29:1031:23:828:-58.7259,0,-75.0732	0/1:70:21,49:21:752:49:1760:-135.996,0,-45.2709	0/0:114:113,0:113:4039:0:0:0,-34.0164,-353.785	0/0:85:85,0:85:2998:0:0:0,-25.5875,-262
chr06	13766102	.	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chr06	14842494	.	T	C	21261.3	PASS	AB=0.48495;ABP=8.30463;AC=50;AF=0.265957;AN=188;AO=1334;CIGAR=1X;DP=6389;DPB=6389;DPRA=0.963337;EPP=2899.75;EPPR=10975.5;GTI=5;LEN=1;MEANALT=1;MQM=59.9678;MQMR=59.9891;NS=94;NUMALT=1;ODDS=0.557093;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47383;QR=180460;RO=5053;RPL=0;RPP=2899.75;RPPR=10975.5;RPR=1334;RUN=1;SAF=0;SAP=2899.75;SAR=1334;SRF=0;SRP=10975.5;SRR=5053;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:18,13:18:644:13:468:-33.1277,0,-48.9587	0/1:70:36,34:36:1292:34:1185:-85.8799,0,-95.5117	0/1:84:35,49:35:1252:49:1742:-131.776,0,-87.6986	0/0:166:165,1:165:5896:1:36:0,-46.3727,-527.153	0/0:38:36,2:36:1292:2:68:0,-4.98143,-110.126	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:128:59,69:59:2088:69:2460:-183.121,0,-149.589	0/1:61:32,29:32:1144:29:1040:-75.4444,0,-84.9067	0/1:44:21,23:21:741:23:828:-61.5988,0,-53.7663	0/1:33:16,17:16:567:17:600:-44.3952,0,-41.4267	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:39:20,19:20:712:19:671:-48.9756,0,-52.6665	0/1:33:15,18:15:519:18:635:-47.543,0,-37.1027	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:34:21,13:21:748:13:456:-31.1382,0,-57.4103	0/1:42:17,25:17:612:25:898:-68.4975,0,-42.7702	0/0:36:36,0:36:1271:0:0:0,-10.8371,-114.692	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:93:56,37:56:2004:37:1328:-91.8264,0,-152.638	0/1:107:72,35:72:2580:35:1256:-81.1305,0,-200.239	0/0:110:109,1:109:3907:1:32:0,-29.914,-348.623	0/1:53:25,28:25:892:28:989:-73.3673,0,-64.6451	0/1:105:55,50:55:1960:50:1792:-129.954,0,-145.067	0/1:65:42,23:42:1500:23:811:-53.743,0,-115.728	0/0:238:236,2:236:8441:2:68:0,-65.1874,-753.234	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.768	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:163:90,73:90:3224:73:2566:-182.123,0,-241.314	0/1:75:33,42:33:1173:42:1504:-113.077,0,-83.2983	0/1:65:29,36:29:1036:36:1292:-97.0168,0,-73.987	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:149:65,84:65:2332:84:2999:-225.288,0,-165.286	0/0:151:151,0:151:5403:0:0:0,-45.4555,-486.396	0/1:39:26,13:26:932:13:468:-30.7195,0,-72.4587	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:110:107,3:107:3801:3:108:0,-23.0381,-332.213	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:144:70,74:70:2512:74:2630:-193.598,0,-182.979	0/1:43:27,16:27:964:16:543:-36.2443,0,-74.1325	0/1:48:23,25:23:806:25:869:-64.075,0,-58.4088	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/1:103:71,32:71:2541:32:1140:-71.9031,0,-197.933	0/0:114:114,0:114:4064:0:0:0,-34.3174,-365.949	0/0:103:103,0:103:3666:0:0:0,-31.0061,-330.142	0/1:62:38,24:38:1364:24:845:-57.7032,0,-104.397	0/0:263:263,0:263:9421:0:0:0,-79.1709,-847.849	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:124:122,0:122:4364:0:0:0,-36.7257,-392.575	0/1:20:16,4:16:572:4:144:-7.29302,0,-45.7928	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/1:84:53,31:53:1896:31:1104:-74.3841,0,-145.632	0/0:30:28,2:28:1000:2:72:0,-2.19418,-83.4787	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:61:32,29:32:1144:29:1036:-75.1911,0,-84.9067	0/0:79:79,0:79:2793:0:0:0,-23.7814,-251.481	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:134:134,0:134:4737:0:0:0,-40.338,-426.491	0/0:133:130,3:130:4632:3:108:0,-29.9618,-406.963	0/1:52:20,32:20:720:32:1139:-87.1648,0,-49.4752	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/0:108:103,5:103:3672:5:180:0,-15.9592,-314.133	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:80:80,0:80:2845:0:0:0,-24.0824,-256.287	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/1:19:6,13:6:212:13:464:-36.3779,0,-13.7052	0/1:86:54,32:54:1928:32:1139:-76.9294,0,-147.908	0/1:50:24,26:24:856:26:928:-68.7868,0,-62.3096	0/1:47:16,31:16:576:31:1107:-85.7917,0,-38.0266	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.892	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.359	0/0:188:183,5:183:6511:5:180:0,-40.0416,-569.524	0/1:6:3,3:3:108:3:93:-6.87055,0,-8.26899	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:179:179,0:179:6402:0:0:0,-53.8844,-576.268	0/1:69:26,43:26:927:43:1509:-115.33,0,-62.9763	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:37:21,16:21:748:16:570:-40.4943,0,-56.5072	0/1:114:44,70:44:1568:70:2472:-188.415,0,-107.094	0/1:18:5,13:5:176:13:464:-36.679,0,-10.7665	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.006	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:43:24,19:24:848:19:672:-47.8625,0,-63.6954	0/1:48:17,31:17:612:31:1099:-84.77,0,-40.964	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.966	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445
chr06	14878726	.	C	T	121223	PASS	AB=0.452532;ABP=358.21;AC=93;AF=0.494681;AN=188;AO=8213;CIGAR=1X;DP=18153;DPB=18153;DPRA=48.7876;EPP=17819.9;EPPR=21433.5;GTI=1;LEN=1;MEANALT=1.03226;MQM=51.47;MQMR=31.7073;NS=94;NUMALT=1;ODDS=98.2613;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293939;QR=353746;RO=9937;RPL=9;RPP=17759.2;RPPR=35.0654;RPR=8204;RUN=1;SAF=11;SAP=17741.9;SAR=8202;SRF=5175;SRP=40.2837;SRR=4762;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:109:45,64:45:1567:64:2288:-166.236,0,-91.4136	0/1:359:208,151:208:7363:151:5388:-375.934,0,-476.974	0/1:344:232,112:232:8287:112:4018:-245.302,0,-540.405	0/1:296:122,174:122:4342:174:6220:-470.757,0,-266.905	0/1:105:59,46:59:2111:46:1656:-107.533,0,-100.254	0/1:111:62,49:62:2219:49:1756:-115.612,0,-142.837	0/1:218:93,125:93:3301:125:4476:-335.098,0,-205.442	0/1:360:232,128:232:8250:128:4576:-280.347,0,-555.553	0/1:180:82,98:82:2931:98:3516:-236.045,0,-181.821	0/1:176:81,95:81:2903:95:3378:-217.513,0,-181.985	0/1:227:152,75:152:5382:75:2696:-152.013,0,-371.715	0/1:175:92,83:92:3242:83:2980:-215.279,0,-210.102	0/1:214:139,75:139:4912:75:2692:-160.493,0,-326.047	0/1:245:163,82:163:5813:82:2933:-161.11,0,-286.212	0/1:189:110,79:110:3909:79:2816:-196.009,0,-263.399	0/1:118:51,67:51:1823:67:2404:-154.988,0,-77.0974	0/1:287:183,104:183:6528:104:3713:-245.725,0,-434.731	0/1:173:100,73:100:3588:73:2616:-183.316,0,-231.868	0/1:124:60,64:60:2122:64:2300:-167.572,0,-130.617	0/1:252:125,127:125:4418:127:4551:-333.221,0,-283.638	0/1:271:122,149:122:4361:149:5334:-349.931,0,-183.154	0/1:129:64,65:64:2283:65:2336:-136.674,0,-101.92	0/1:88:42,46:42:1508:46:1656:-113.505,0,-92.9214	0/1:304:183,121:183:6538:121:4332:-269.872,0,-353.021	0/1:120:59,61:59:2111:61:2173:-138.387,0,-100.008	0/1:603:352,250:352:12573:250:8942:-492.722,0,-589.739	0/1:377:141,236:141:5026:236:8399:-641.779,0,-203.042	0/1:97:48,49:48:1715:49:1756:-129.124,0,-79.1505	0/1:421:244,177:244:8703:177:6321:-333.578,0,-418.25	0/1:172:88,84:88:3152:84:3016:-195.571,0,-136.987	0/1:293:156,135:156:5579:135:4838:-346.995,0,-367.376	0/1:10:5,5:5:180:5:180:-11.3967,0,-8.37033	0/1:22:11,11:11:396:11:396:-29.3601,0,-11.3101	0/1:3:1,2:1:36:2:72:-4.90053,0,-2.07766	0/1:11:9,2:9:324:2:72:-3.52539,0,-24.2877	0/1:21:16,5:16:576:5:180:-9.7302,0,-42.8064	0/1:599:364,235:364:12906:235:8423:-424.079,0,-631.352	0/1:120:53,67:53:1891:67:2399:-179.951,0,-82.317	0/1:148:80,68:80:2855:68:2444:-175.292,0,-184.663	0/1:6:2,4:2:72:4:144:-11.5074,0,-2.92568	0/1:315:186,129:186:6655:129:4632:-319.694,0,-311.878	0/1:124:82,42:82:2921:42:1504:-97.3059,0,-138.046	0/1:204:104,100:104:3719:100:3588:-241.323,0,-161.517	0/1:176:78,98:78:2773:98:3516:-228.376,0,-168.065	0/1:210:133,77:133:4706:77:2743:-152.511,0,-322.337	0/1:112:46,66:46:1638:66:2364:-140.531,0,-76.0445	0/1:201:108,93:108:3844:93:3328:-224.055,0,-245.222	0/1:311:172,139:172:6079:139:4969:-350.194,0,-405.105	0/1:124:65,59:65:2340:59:2116:-151.304,0,-153.902	0/1:235:108,127:108:3859:127:4537:-296.947,0,-240.375	0/1:166:70,96:70:2496:96:3422:-198.643,0,-98.9057	0/1:10:3,7:3:108:7:252:-14.4895,0,-6.21096	0/1:200:85,115:85:3026:115:4109:-308.21,0,-178.188	0/1:77:27,50:27:959:50:1781:-112.338,0,-36.8198	0/1:31:14,17:14:500:17:612:-41.1559,0,-31.7739	0/1:260:162,98:162:5743:98:3488:-221.691,0,-267.408	0/1:79:27,52:27:955:52:1868:-144.054,0,-54.4161	0/1:12:9,3:9:324:3:108:-4.5055,0,-17.4445	0/1:8:5,3:5:180:3:108:-5.48137,0,-7.12364	0/1:120:60,60:60:2133:60:2147:-138.012,0,-98.9017	0/1:340:229,111:229:8148:111:3982:-256.218,0,-563.995	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.0352	0/1:189:61,128:61:2155:128:4592:-291.943,0,-80.4291	0/1:399:254,145:254:9031:145:5171:-344.087,0,-613.1	0/1:95:43,52:43:1532:52:1856:-138.476,0,-72.1303	0/1:151:84,67:84:3012:67:2397:-169.974,0,-199.346	0/1:261:114,147:114:4062:147:5259:-393.106,0,-251.308	0/1:215:144,71:144:5147:71:2540:-161.798,0,-351.612	0/1:78:42,36:42:1508:36:1288:-92.6504,0,-59.2854	0/1:169:67,102:67:2374:102:3644:-277.255,0,-133.185	0/1:277:181,96:181:6449:96:3443:-172.517,0,-294.189	0/1:40:26,14:26:936:14:504:-27.4007,0,-63.2918	0/1:196:97,99:97:3464:99:3552:-259.718,0,-217.034	0/1:144:93,51:93:3317:51:1824:-110.199,0,-224.58	0/1:436:302,134:302:10746:134:4774:-261.02,0,-528.39	0/1:232:161,71:161:5739:71:2548:-158.919,0,-398.567	0/1:263:109,154:109:3883:154:5498:-414.404,0,-224.843	0/1:195:77,118:77:2742:118:4236:-320.143,0,-157.746	0/1:12:8,4:8:288:4:144:-7.68943,0,-20.1676	0/1:196:82,114:82:2925:114:4079:-307.001,0,-122.208	0/1:210:68,142:68:2440:142:5075:-393.022,0,-136.662	0/1:632:405,227:405:14419:227:8128:-536.047,0,-982.092	0/1:350:232,118:232:8252:118:4228:-275.245,0,-566.649	0/1:189:114,75:114:4047:75:2668:-181.45,0,-269.964	0/1:219:126,93:126:4493:93:3332:-197.75,0,-301.874	0/1:285:160,125:160:5663:125:4496:-318.12,0,-371.465	0/1:89:43,46:43:1535:46:1640:-110.12,0,-92.1175	0/1:167:82,85:82:2883:85:3040:-222.779,0,-182.491	0/1:144:67,77:67:2391:77:2752:-204.198,0,-148.208	0/1:92:50,42:50:1788:42:1500:-107.585,0,-74.4784	0/1:160:89,71:89:3162:71:2556:-161.18,0,-146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chr06	14878729	.	A	T	177768	PASS	AB=0.550557;ABP=405.259;AC=95;AF=0.505319;AN=188;AO=9979;CIGAR=1X;DP=18122;DPB=18122;DPRA=0;EPP=21663.4;EPPR=17615.8;GTI=1;LEN=1;MEANALT=1.10638;MQM=31.8512;MQMR=51.1044;NS=94;NUMALT=1;ODDS=96.9398;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=356001;QR=290807;RO=8131;RPL=5167;RPP=30.4339;RPPR=17391;RPR=4812;RUN=1;SAF=5166;SAP=30.1257;SAR=4813;SRF=32;SRP=17382.4;SRR=8099;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:105:61,44:61:2179:44:1584:-92.2792,0,-157.423	0/1:360:147,213:147:5261:213:7581:-493.613,0,-362.061	0/1:346:109,237:109:3876:237:8449:-555.549,0,-231.575	0/1:294:172,122:172:6159:122:4341:-266.522,0,-465.869	0/1:106:50,56:50:1796:56:2012:-95.8897,0,-113.838	0/1:113:47,65:47:1692:65:2319:-151.174,0,-109.709	0/1:218:122,96:122:4375:96:3415:-214.337,0,-326.01	0/1:357:128,229:128:4585:229:8189:-552.807,0,-281.624	0/1:183:98,85:98:3511:85:3043:-189.815,0,-232.906	0/1:176:97,79:97:3447:79:2832:-177.433,0,-220.675	0/1:223:72,151:72:2584:151:5392:-372.536,0,-143.92	0/1:174:80,94:80:2852:94:3337:-217.442,0,-202.789	0/1:216:73,143:73:2613:143:5095:-338.689,0,-152.833	0/1:244:80,164:80:2860:164:5826:-288.111,0,-154.652	0/1:192:79,113:79:2818:113:4034:-272.616,0,-195.284	0/1:117:66,50:66:2348:50:1778:-74.2303,0,-151.169	0/1:287:103,184:103:3688:184:6566:-442.545,0,-239.417	0/1:173:74,99:74:2660:99:3547:-230.002,0,-185.38	0/1:122:61,61:61:2162:61:2184:-137.533,0,-154.164	0/1:248:123,125:123:4402:125:4449:-289.374,0,-318.591	0/1:271:146,125:146:5235:125:4456:-189.887,0,-341.432	0/1:128:66,62:66:2368:62:2232:-99.6552,0,-138.115	0/1:86:44,42:44:1584:42:1500:-94.5787,0,-108.407	0/1:304:120,184:120:4303:184:6572:-355.853,0,-266.921	0/1:120:60,59:60:2156:59:2115:-102.746,0,-135.611	0/1:605:252,352:252:9017:352:12534:-584.234,0,-492.807	0/1:374:230,144:230:8244:144:5142:-212.764,0,-626.675	0/1:99:47,52:47:1683:52:1868:-90.8936,0,-121.954	0/1:421:175,246:175:6247:246:8804:-428.297,0,-324.62	0/1:170:84,86:84:3020:86:3050:-133.026,0,-193.626	0/1:287:130,157:130:4663:157:5579:-367.488,0,-332.985	0/1:10:5,5:5:171:5:180:-8.37033,0,-11.0902	0/1:22:11,11:11:396:11:381:-11.1579,0,-29.3601	0/1:3:2,1:2:72:1:36:-2.07766,0,-4.90053	0/1:10:1,9:1:36:9:316:-23.6339,0,-0.587975	0/1:21:5,16:5:180:16:576:-42.8064,0,-9.7302	0/1:603:234,369:234:8366:369:13184:-648.865,0,-416.132	0/1:116:64,52:64:2272:52:1857:-80.1865,0,-169.729	0/1:148:67,81:67:2404:81:2893:-189.067,0,-172.064	0/1:5:4,1:4:129:1:36:-0.288128,0,-10.4225	0/1:316:128,188:128:4569:188:6699:-319.15,0,-309.501	0/1:123:41,82:41:1476:82:2910:-141.109,0,-93.2814	0/1:196:94,102:94:3372:102:3648:-158.008,0,-225.654	0/1:176:98,78:98:3507:78:2797:-172.09,0,-225.245	0/1:211:75,135:75:2656:135:4820:-330.123,0,-145.827	0/1:114:68,46:68:2428:46:1648:-75.3325,0,-144.736	0/1:200:91,108:91:3260:108:3872:-247.736,0,-217.378	0/1:306:131,175:131:4712:175:6245:-419.952,0,-328.847	0/1:123:58,65:58:2076:65:2332:-153.647,0,-148.042	0/1:230:125,105:125:4460:105:3768:-236.735,0,-290.88	0/1:168:98,70:98:3501:70:2503:-98.2717,0,-202.49	0/1:10:7,3:7:252:3:108:-6.21096,0,-14.4895	0/1:199:117,82:117:4200:82:2925:-173.787,0,-308.887	0/1:79:51,28:51:1827:28:980:-38.7662,0,-114.987	0/1:30:17,13:17:612:13:468:-29.5163,0,-41.4569	0/1:260:98,162:98:3516:162:5778:-270.341,0,-220.953	0/1:78:52,26:52:1868:26:936:-52.781,0,-144.355	0/1:12:3,9:3:108:9:324:-17.4445,0,-4.5055	0/1:8:3,5:3:108:5:180:-7.12364,0,-5.48137	0/1:117:59,58:59:2120:58:2080:-98.2574,0,-137.16	0/1:345:110,234:110:3922:234:8361:-579.054,0,-249.318	1/1:4:0,4:0:0:4:140:-11.0237,-1.20412,0	0/1:188:127,61:127:4560:61:2188:-83.0553,0,-287.296	0/1:403:145,258:145:5200:258:9146:-622.342,0,-339.591	0/1:91:48,43:48:1724:43:1533:-73.2366,0,-128.028	0/1:151:68,83:68:2431:83:2950:-196.266,0,-169.415	0/1:264:147,117:147:5215:117:4136:-257.505,0,-386.342	0/1:215:72,143:72:2572:143:5111:-353.566,0,-159.015	0/1:77:35,42:35:1247:42:1508:-59.7579,0,-89.319	0/1:165:101,64:101:3613:64:2281:-130.585,0,-273.416	0/1:278:94,184:94:3363:184:6569:-304.782,0,-165.291	0/1:40:15,25:15:540:25:892:-61.3822,0,-28.8268	0/1:195:97,98:97:3472:98:3506:-220.925,0,-252.823	0/1:146:51,95:51:1832:95:3383:-229.699,0,-108.663	0/1:440:132,308:132:4722:308:10992:-550.238,0,-247.611	0/1:236:73,162:73:2624:162:5772:-400.043,0,-164.517	0/1:259:154,105:154:5485:105:3747:-219.213,0,-409.556	0/1:196:120,76:120:4312:76:2728:-158.491,0,-321.245	0/1:13:4,9:4:144:9:324:-22.9497,0,-7.3884	0/1:196:112,84:112:4002:84:2995:-127.036,0,-300.074	0/1:211:142,69:142:5077:69:2461:-138.267,0,-391.659	0/1:632:232,400:232:8303:400:14262:-974.515,0,-541.756	0/1:349:118,231:118:4183:231:8253:-566.333,0,-271.497	0/1:187:74,113:74:2642:113:4026:-270.901,0,-179.276	0/1:223:94,129:94:3367:129:4580:-305.873,0,-199.406	0/1:284:125,159:125:4460:159:5663:-373.075,0,-311.576	0/1:90:46,44:46:1631:44:1576:-94.9813,0,-109.252	0/1:168:83,85:83:2954:85:3040:-193.646,0,-215.076	0/1:140:77,63:77:2725:63:2249:-141.405,0,-198.017	0/1:92:42,50:42:1489:50:1777:-74.3364,0,-106.572	0/1:159:72,87:72:2560:87:3080:-143.491,0,-159.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chr06	15329878	.	C	T	54558.4	PASS	AB=0.52504;ABP=9.75274;AC=142;AF=0.763441;AN=186;AO=2548;CIGAR=1X;DP=3150;DPB=3150;DPRA=34.2283;EPP=5440.79;EPPR=1301.57;GTI=3;LEN=1;MEANALT=1;MQM=59.9855;MQMR=59.9618;NS=93;NUMALT=1;ODDS=0.0308202;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90422;QR=21438;RO=602;RPL=9;RPP=5458.03;RPPR=1301.57;RPR=2539;RUN=1;SAF=2;SAP=5518.56;SAR=2546;SRF=0;SRP=1310.24;SRR=602;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:26:10,16:10:356:16:553:-42.2639,0,-24.5545	0/1:23:8,15:8:288:15:536:-41.6511,0,-19.3437	1/1:20:0,20:0:0:20:687:-62.1478,-6.0206,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:24:13,11:13:468:11:388:-28.0326,0,-35.2349	0/1:35:19,16:19:676:16:566:-40.7351,0,-50.6319	0/1:21:8,13:8:284:13:464:-35.7759,0,-19.5817	0/1:35:15,20:15:527:20:712:-53.8706,0,-37.2241	1/1:49:0,49:0:0:49:1754:-158.144,-14.7505,0	0/1:33:18,15:18:636:15:521:-37.2823,0,-47.634	0/1:31:14,17:14:500:17:612:-46.0815,0,-36.0042	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	0/1:45:24,21:24:837:21:756:-54.8209,0,-62.0993	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	1/1:17:0,17:0:0:17:604:-54.6891,-5.11751,0	1/1:36:2,34:2:72:34:1224:-103.629,-4.00036,0	0/1:27:16,11:16:576:11:380:-26.4042,0,-44.0472	0/1:23:8,15:8:288:15:528:-40.9277,0,-19.3437	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:14:4,10:4:144:10:352:-27.8038,0,-9.0992	0/1:14:7,7:7:248:7:229:-16.7151,0,-18.4498	0/1:16:6,10:6:216:10:352:-27.2017,0,-14.974	1/1:33:1,32:1:36:32:1144:-99.6689,-6.33572,0	1/1:18:0,18:0:0:18:626:-56.6335,-5.41854,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:25:13,12:13:468:12:428:-31.3331,0,-34.9339	0/1:24:12,12:12:432:12:424:-31.2717,0,-31.9965	0/1:29:15,14:15:532:14:496:-36.2444,0,-39.4832	1/1:15:0,15:0:0:15:517:-46.8546,-4.51545,0	1/1:103:0,103:0:0:103:3637:-327.538,-31.0061,0	1/1:90:0,90:0:0:90:3198:-288.045,-27.0927,0	1/1:124:3,121:3:108:121:4262:-373.688,-27.2526,0	1/1:176:0,176:0:0:176:6257:-563.228,-52.9813,0	0/1:82:43,39:43:1536:39:1400:-101.615,0,-113.849	1/1:16:0,16:0:0:16:556:-50.3672,-4.81648,0	0/1:90:29,61:29:1036:61:2175:-168.923,0,-66.4612	.:.:.:.:.:.:.:.	1/1:16:0,16:0:0:16:563:-50.9992,-4.81648,0	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	0/1:16:9,7:9:324:7:244:-17.4829,0,-24.6894	0/1:27:16,11:16:563:11:396:-27.8549,0,-42.8714	0/1:37:16,21:16:568:21:752:-56.8681,0,-40.3138	1/1:34:0,34:0:0:34:1207:-108.936,-10.235,0	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/1:21:2,19:2:72:19:680:-55.2075,0,-0.515092	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:18:5,13:5:180:13:464:-36.679,0,-11.1335	1/1:32:0,32:0:0:32:1136:-102.549,-9.63296,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	1/1:46:0,46:0:0:46:1616:-145.729,-13.8474,0	0/1:23:12,11:12:428:11:392:-28.6964,0,-31.9351	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:62:1,61:1:36:61:2159:-190.979,-15.0656,0	1/1:63:0,63:0:0:63:2240:-201.864,-18.9649,0	0/1:30:14,16:14:489:16:553:-41.0631,0,-35.308	1/1:53:0,53:0:0:53:1884:-169.839,-15.9546,0	1/1:9:0,9:0:0:9:311:-28.3237,-2.70927,0	1/1:22:0,22:0:0:22:776:-70.1622,-6.62266,0	1/1:26:0,26:0:0:26:921:-83.2061,-7.82678,0	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	1/1:5:0,5:0:0:5:170:-15.6335,-1.50515,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	0/1:21:2,19:2:72:19:676:-54.8464,0,-0.515092	1/1:130:1,129:1:36:129:4616:-412.006,-35.5356,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	1/1:65:4,61:4:144:61:2161:-181.443,-6.25333,0	0/1:28:10,18:10:356:18:614:-47.149,0,-23.9524	0/1:12:6,6:6:212:6:212:-15.8124,0,-15.8124	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.0692	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:27:0,27:0:0:27:956:-86.3557,-8.12781,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:63:1,62:1:36:62:2181:-192.957,-15.3666,0	1/1:23:0,23:0:0:23:805:-72.7675,-6.92369,0	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:33:0,33:0:0:33:1165:-105.156,-9.93399,0	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0491	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:77:42,35:42:1490:35:1243:-88.9946,0,-111.214	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:45:23,22:23:807:22:792:-58.0593,0,-59.4028	0/1:89:45,44:45:1605:44:1568:-114.62,0,-117.946	0/1:29:20,9:20:708:9:324:-20.776,0,-55.3157	1/1:7:0,7:0:0:7:247:-22.5729,-2.10721,0	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0
chr06	16879446	.	G	A	65617.4	PASS	AB=0.50495;ABP=3.44029;AC=138;AF=0.734043;AN=188;AO=3158;CIGAR=1X;DP=4174;DPB=4174;DPRA=44.871;EPP=6860.52;EPPR=2200.54;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9832;MQMR=59.9921;NS=94;NUMALT=1;ODDS=0.0389638;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112137;QR=35745;RO=1012;RPL=1;RPP=6851.84;RPPR=2200.54;RPR=3157;RUN=1;SAF=1;SAP=6851.84;SAR=3157;SRF=0;SRP=2200.54;SRR=1012;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:7,4:7:243:4:144:-10.0023,0,-18.8962	0/1:64:30,34:30:1059:34:1220:-90.8409,0,-76.3545	0/1:38:17,21:17:608:21:737:-55.2115,0,-43.6129	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:26:1,25:1:36:25:888:-76.6401,-4.22851,0	1/1:26:0,26:0:0:26:904:-81.6719,-7.82678,0	0/1:71:26,45:26:936:45:1604:-123.277,0,-63.1863	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/1:83:45,38:45:1590:38:1337:-95.639,0,-118.403	0/1:37:23,14:23:801:14:488:-33.1123,0,-61.2686	1/1:39:0,39:0:0:39:1388:-125.219,-11.7402,0	0/1:33:15,18:15:536:18:635:-47.543,0,-38.6408	0/1:41:23,18:23:787:18:636:-45.2258,0,-58.8002	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:27:10,17:10:326:17:612:-47.2856,0,-21.5265	0/1:39:22,17:22:775:17:599:-42.4979,0,-58.331	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	1/1:18:0,18:0:0:18:611:-55.3065,-5.41854,0	0/1:67:32,35:32:1133:35:1244:-92.0957,0,-82.1076	0/1:68:40,28:40:1436:28:1004:-70.2058,0,-109.068	1/1:40:0,39:0:0:39:1381:-124.363,-11.7402,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:69:14,55:14:504:55:1967:-156.533,0,-24.927	0/1:22:10,12:10:356:12:413:-30.8752,0,-25.7586	1/1:183:0,183:0:0:183:6514:-586.34,-55.0885,0	1/1:68:0,68:0:0:68:2410:-217.156,-20.47,0	1/1:20:0,20:0:0:20:700:-63.3221,-6.0206,0	0/1:99:47,52:47:1679:52:1851:-137.066,0,-121.594	0/1:92:46,46:46:1595:46:1618:-118.21,0,-116.138	0/1:48:26,22:26:920:22:769:-55.0792,0,-68.6676	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:102:53,49:53:1863:49:1735:-125.729,0,-137.241	1/1:93:0,93:0:0:93:3300:-297.221,-27.9958,0	0/1:38:16,21:16:555:21:740:-55.5688,0,-38.9199	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	1/1:37:0,37:0:0:37:1297:-117.026,-11.1381,0	1/1:14:1,13:1:36:13:447:-36.9594,-0.616145,0	0/1:45:22,23:22:753:23:816:-60.2154,0,-54.536	0/1:24:10,14:10:356:14:495:-37.6583,0,-25.1565	0/1:28:14,14:14:478:14:496:-36.5454,0,-34.9143	1/1:29:0,29:0:0:29:1010:-91.207,-8.72987,0	0/1:51:28,23:28:1004:23:824:-59.1308,0,-75.3233	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:81:0,81:0:0:81:2904:-261.587,-24.3834,0	0/1:75:40,35:40:1427:35:1256:-90.768,0,-106.15	1/1:95:0,95:0:0:95:3368:-303.336,-28.5979,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:63:0,63:0:0:63:2254:-203.123,-18.9649,0	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/1:53:23,30:23:815:30:1072:-80.8379,0,-57.7162	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:37:15,22:15:531:22:788:-60.1067,0,-36.9838	1/1:70:1,69:1:36:69:2476:-219.467,-17.4738,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:132:0,132:0:0:132:4650:-418.664,-39.736,0	1/1:95:5,90:5:180:90:3204:-272.032,-12.0458,0	0/1:50:22,28:22:792:28:1008:-75.9849,0,-56.5542	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	1/1:56:1,55:1:36:55:1940:-171.275,-13.2594,0	1/1:81:3,78:3:108:78:2780:-240.367,-14.3083,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:34:0,33:0:0:33:1164:-104.795,-9.93399,0	1/1:59:0,59:0:0:59:2076:-187.109,-17.7608,0	0/1:19:13,6:13:453:6:212:-13.7052,0,-35.3801	0/1:55:27,28:27:945:28:992:-73.0377,0,-68.8053	0/1:35:16,19:16:576:19:664:-49.5479,0,-41.6389	0/1:78:30,48:30:1055:48:1708:-130.525,0,-71.7797	1/1:94:0,94:0:0:94:3352:-301.895,-28.2968,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:38:0,38:0:0:38:1343:-121.169,-11.4391,0	1/1:88:0,88:0:0:88:3124:-281.385,-26.4906,0	0/1:75:39,36:39:1379:36:1266:-91.6639,0,-101.831	1/1:21:0,21:0:0:21:747:-67.5543,-6.32163,0	0/1:33:18,15:18:640:15:532:-38.2791,0,-47.9953	0/1:59:39,20:39:1359:20:716:-47.0069,0,-104.844	0/1:29:14,15:14:500:15:536:-39.8449,0,-36.6063	1/1:38:0,38:0:0:38:1323:-119.367,-11.4391,0	1/1:28:0,27:0:0:27:968:-87.0776,-8.12781,0	0/1:24:12,12:12:417:12:432:-31.9965,0,-30.6355	0/1:59:34,25:34:1207:25:885:-62.2065,0,-91.1745	0/1:33:24,9:24:852:9:302:-17.5711,0,-67.0664	1/1:32:0,32:0:0:32:1136:-102.549,-9.63296,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0
chr06	17112686	.	A	T	60661.8	PASS	AB=0.546545;ABP=122.273;AC=49;AF=0.260638;AN=188;AO=3487;CIGAR=1X;DP=13216;DPB=13216;DPRA=1.0043;EPP=7574.93;EPPR=21109.7;GTI=0;LEN=1;MEANALT=1.08929;MQM=59.9837;MQMR=59.9757;NS=94;NUMALT=1;ODDS=5.56913;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124863;QR=346801;RO=9720;RPL=0;RPP=7574.93;RPPR=21109.7;RPR=3487;RUN=1;SAF=3487;SAP=7574.93;SAR=0;SRF=9720;SRP=21109.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:23,31:23:816:31:1108:-83.4156,0,-57.1465	0/1:280:113,167:113:4025:167:5975:-453.568,0,-278.15	0/1:195:80,115:80:2857:115:4105:-310.934,0,-198.665	0/0:344:343,1:343:12231:1:36:0,-99.956,-1097.04	0/0:97:91,5:91:3252:5:176:0,-13.0724,-276.715	0/0:63:62,1:62:2201:1:36:0,-15.3666,-194.756	0/0:118:118,0:118:4185:0:0:0,-35.5215,-376.834	0/1:223:88,135:88:3136:135:4807:-365.654,0,-215.337	0/1:183:92,91:92:3231:91:3234:-236.187,0,-235.923	0/1:148:63,85:63:2234:85:3048:-229.997,0,-156.768	0/1:50:28,22:28:1008:22:788:-56.1933,0,-75.9849	0/0:95:95,0:95:3392:0:0:0,-28.5978,-305.496	0/1:64:27,37:27:968:37:1328:-100.556,0,-68.1714	0/1:82:47,34:47:1673:34:1209:-84.4593,0,-126.2	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/1:55:24,31:24:856:31:1108:-83.4743,0,-60.8045	0/1:105:56,48:56:2008:48:1724:-123.778,0,-149.326	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:319:144,175:144:5137:175:6296:-470.7,0,-366.443	0/1:208:92,116:92:3276:116:4157:-311.694,0,-232.447	0/0:144:144,0:144:5152:0:0:0,-43.3483,-463.822	0/1:182:76,106:76:2716:106:3795:-286.96,0,-189.888	0/1:187:91,96:91:3236:96:3428:-252.438,0,-235.171	0/1:108:46,62:46:1629:62:2228:-168.273,0,-114.386	0/0:630:630,0:630:22518:0:0:0,-189.649,-2025.52	0/0:354:354,0:354:12652:0:0:0,-106.565,-1138.51	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:390:198,192:198:7020:192:6888:-502.584,0,-514.462	0/1:268:129,139:129:4632:139:4976:-367.313,0,-336.365	0/1:237:105,132:105:3749:132:4724:-353.972,0,-266.257	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/1:20:5,15:5:180:15:540:-42.9159,0,-10.5315	0/1:26:7,19:7:252:19:676:-53.3412,0,-15.2022	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:243:137,106:137:4897:106:3804:-269.407,0,-367.73	0/0:300:300,0:300:10706:0:0:0,-90.309,-963.449	0/1:48:15,33:15:536:33:1184:-92.4189,0,-34.1254	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:208:208,0:208:7437:0:0:0,-62.6142,-669.374	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:206:75,131:75:2661:131:4691:-360.337,0,-177.723	0/1:100:47,53:47:1684:53:1895:-140.724,0,-121.744	0/1:79:47,32:47:1683:32:1148:-79.8485,0,-127.975	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965	0/1:160:47,113:47:1669:113:4039:-315.531,0,-102.331	0/0:206:200,6:200:7122:6:216:0,-42.2217,-621.249	0/0:211:211,0:211:7568:0:0:0,-63.5173,-681.157	0/1:277:140,137:140:5000:137:4912:-358.845,0,-366.764	0/0:187:187,0:187:6662:0:0:0,-56.2926,-599.62	0/1:24:12,12:12:417:12:424:-31.2717,0,-30.6355	0/0:151:151,0:151:5404:0:0:0,-45.4555,-486.491	0/1:66:25,41:25:892:41:1468:-112.548,0,-60.7317	0/1:30:6,24:6:212:24:860:-68.6909,0,-10.3939	0/1:243:97,146:97:3468:146:5244:-398.318,0,-239.182	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.866	0/1:30:18,12:18:640:12:432:-30.1903,0,-48.8984	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:152:68,84:68:2432:84:3021:-226.363,0,-173.379	0/0:109:108,0:108:3884:0:0:0,-32.5112,-349.391	0/1:17:10,7:10:352:7:252:-17.9114,0,-26.9007	0/0:301:301,0:301:10731:0:0:0,-90.61,-965.698	0/0:320:317,3:317:11330:3:108:0,-86.2544,-1009.5	0/1:140:61,79:61:2168:79:2824:-212.255,0,-153.243	0/0:117:117,0:117:4185:0:0:0,-35.2205,-376.83	0/0:355:351,4:351:12475:4:140:0,-93.9211,-1109.64	0/0:164:161,3:161:5738:3:104:0,-39.6661,-506.833	0/0:29:28,0:28:1008:0:0:0,-8.42884,-90.6765	0/0:103:103,0:103:3672:0:0:0,-31.0061,-330.685	0/0:122:122,0:122:4357:0:0:0,-36.7257,-391.807	0/1:25:8,17:8:284:17:608:-47.5263,0,-18.3776	0/1:139:53,86:53:1877:86:3057:-233.51,0,-127.364	0/1:80:37,43:37:1301:43:1548:-115.531,0,-93.3069	0/1:271:127,144:127:4532:144:5160:-382.961,0,-325.693	0/0:191:191,0:191:6760:0:0:0,-57.4967,-608.476	0/0:135:135,0:135:4821:0:0:0,-40.639,-434.031	0/0:279:279,0:279:9958:0:0:0,-83.9874,-896.159	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	0/0:155:155,0:155:5536:0:0:0,-46.6596,-498.367	0/0:130:130,0:130:4626:0:0:0,-39.1339,-416.502	0/0:252:250,0:250:8880:0:0:0,-75.2575,-798.827	0/1:115:54,61:54:1936:61:2183:-162.117,0,-139.898	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/1:120:69,51:69:2484:51:1832:-129.037,0,-187.689	0/1:168:86,81:86:3064:81:2903:-210.873,0,-225.356	0/1:49:25,24:25:900:24:864:-63.3321,0,-66.5705	0/0:88:88,0:88:3148:0:0:0,-26.4906,-282.183	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	0/1:58:32,26:32:1144:26:936:-67.0997,0,-85.8098	0/1:65:23,42:23:828:42:1504:-116.088,0,-55.2772	0/0:183:183,0:183:6529:0:0:0,-55.0885,-587.638	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.386
chr06	17112702	.	T	C	203659	PASS	AB=0.450356;ABP=138.191;AC=139;AF=0.739362;AN=188;AO=9615;CIGAR=1X;DP=13113;DPB=13113;DPRA=0;EPP=20544.3;EPPR=7529.49;GTI=0;LEN=1;MEANALT=1;MQM=59.9797;MQMR=59.9874;NS=94;NUMALT=1;ODDS=4.66959;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=342813;QR=125438;RO=3498;RPL=39;RPP=20544.3;RPPR=7538.14;RPR=9576;RUN=1;SAF=9615;SAP=20881.7;SAR=0;SRF=3497;SRP=7590.14;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:30,23:30:1080:23:803:-56.6315,0,-81.5587	0/1:279:168,111:168:6016:111:3960:-272.605,0,-457.557	0/1:190:112,78:112:3999:78:2790:-194.144,0,-302.904	1/1:340:1,339:1:36:339:12123:-1087.32,-98.7519,0	1/1:98:5,93:5:180:93:3308:-281.387,-12.9489,0	1/1:62:1,61:1:36:61:2180:-192.868,-15.0656,0	1/1:119:0,119:0:0:119:4272:-384.657,-35.8226,0	0/1:217:131,86:131:4716:86:3054:-209.766,0,-359.273	0/1:185:92,93:92:3296:93:3314:-242.787,0,-241.168	0/1:151:87,64:87:3116:64:2284:-160.366,0,-235.211	0/1:50:23,27:23:828:27:968:-72.3859,0,-59.7926	1/1:95:0,95:0:0:95:3356:-302.258,-28.5979,0	0/1:66:39,27:39:1385:27:963:-67.118,0,-105.079	0/1:79:34,45:34:1220:45:1599:-120.418,0,-86.3254	1/1:82:0,82:0:0:82:2933:-264.204,-24.6845,0	0/1:53:29,24:29:1044:24:853:-61.1348,0,-78.3202	0/1:105:48,57:48:1724:57:2031:-151.454,0,-123.837	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	0/1:316:174,142:174:6225:142:5082:-362.399,0,-465.219	0/1:205:116,89:116:4164:89:3175:-224.263,0,-313.228	1/1:144:0,144:0:0:144:5139:-462.652,-43.3483,0	0/1:181:106,75:106:3808:75:2673:-186.326,0,-288.43	0/1:186:97,89:97:3469:89:3180:-230.433,0,-256.425	0/1:107:62,45:62:2232:45:1599:-111.989,0,-168.933	1/1:619:0,619:0:0:619:21981:-1977.63,-186.338,0	1/1:349:0,349:0:0:349:12475:-1122.58,-105.059,0	1/1:54:0,54:0:0:54:1931:-174.066,-16.2556,0	0/1:386:192,194:192:6891:194:6917:-506.402,0,-504.057	0/1:267:138,129:138:4956:129:4581:-332.081,0,-365.812	0/1:239:134,105:134:4804:105:3755:-266.202,0,-360.569	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:23:0,23:0:0:23:811:-73.31,-6.92369,0	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	0/1:27:20,7:20:712:7:252:-14.9011,0,-56.2788	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:243:106,137:106:3801:137:4875:-365.752,0,-269.135	1/1:294:0,294:0:0:294:10468:-942.039,-88.5028,0	0/1:48:32,16:32:1144:16:572:-37.364,0,-88.8201	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:203:0,203:0:0:203:7234:-651.115,-61.1091,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:207:134,73:134:4791:73:2592:-171.217,0,-369.033	0/1:103:56,47:56:2012:47:1680:-120.481,0,-150.347	0/1:80:33,47:33:1184:47:1675:-126.954,0,-82.7859	1/1:105:0,105:0:0:105:3744:-337.159,-31.6082,0	0/1:161:115,46:115:4127:46:1641:-99.5117,0,-323.143	1/1:203:7,196:7:252:196:6934:-601.104,-38.0801,0	1/1:213:0,213:0:0:213:7596:-683.679,-64.1194,0	0/1:276:136,140:136:4852:140:4999:-366.974,0,-353.749	1/1:185:0,185:0:0:185:6585:-592.698,-55.6906,0	0/1:24:12,12:12:432:12:423:-31.1803,0,-31.9965	1/1:150:0,150:0:0:150:5365:-482.981,-45.1545,0	0/1:66:42,24:42:1491:24:847:-56.6807,0,-114.616	0/1:30:24,6:24:864:6:216:-10.7596,0,-69.0517	0/1:242:144,98:144:5160:98:3516:-243.8,0,-391.064	1/1:34:0,34:0:0:34:1201:-108.394,-10.235,0	0/1:31:13,18:13:459:18:635:-48.145,0,-32.3122	1/1:30:0,30:0:0:30:1058:-95.5296,-9.0309,0	0/1:150:83,67:83:2980:67:2391:-170.292,0,-223.277	1/1:108:0,108:0:0:108:3859:-347.505,-32.5112,0	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	1/1:294:0,294:0:0:294:10466:-941.862,-88.5028,0	1/1:321:3,318:3:108:318:11360:-1012.21,-86.5555,0	0/1:138:77,61:77:2768:61:2184:-155.284,0,-207.819	1/1:116:0,116:0:0:116:4151:-373.773,-34.9195,0	1/1:349:4,345:4:140:345:12273:-1091.47,-92.1149,0	1/1:165:3,162:3:108:162:5801:-512.127,-39.5948,0	1/1:29:0,29:0:0:29:1023:-92.3817,-8.72987,0	1/1:98:0,98:0:0:98:3494:-314.671,-29.5009,0	1/1:118:0,118:0:0:118:4176:-375.891,-35.5215,0	0/1:22:14,8:14:504:8:284:-19.2807,0,-39.0754	0/1:135:84,51:84:3024:51:1816:-123.082,0,-231.75	0/1:80:44,36:44:1580:36:1279:-91.33,0,-118.409	0/1:270:146,124:146:5244:124:4433:-317.086,0,-390.817	1/1:190:0,190:0:0:190:6798:-611.891,-57.1957,0	1/1:132:0,132:0:0:132:4708:-423.865,-39.736,0	1/1:275:0,275:0:0:275:9750:-877.455,-82.7833,0	0/1:16:12,4:12:428:4:144:-8.49714,0,-34.0423	1/1:155:0,155:0:0:155:5542:-498.905,-46.6597,0	1/1:127:0,127:0:0:127:4547:-409.396,-38.2308,0	1/1:253:0,253:0:0:253:9027:-812.41,-76.1606,0	0/1:116:63,53:63:2268:53:1884:-134.919,0,-169.463	1/1:67:0,67:0:0:67:2403:-216.526,-20.169,0	0/1:121:51,70:51:1836:70:2520:-190.627,0,-129.096	0/1:169:83,86:83:2984:86:3081:-226.643,0,-217.917	0/1:49:24,25:24:864:25:896:-66.2099,0,-63.3321	1/1:86:0,86:0:0:86:3059:-275.54,-25.8886,0	1/1:77:0,77:0:0:77:2743:-247.113,-23.1793,0	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:62:29,33:29:1040:33:1168:-86.7634,0,-75.2505	0/1:64:41,23:41:1476:23:828:-55.5782,0,-113.87	1/1:179:0,179:0:0:179:6383:-574.556,-53.8844,0	1/1:112:3,109:3:108:109:3916:-342.557,-23.6402,0
chr06	17175970	.	T	A	34843.6	PASS	AB=0.550413;ABP=83.143;AC=51;AF=0.271277;AN=188;AO=2013;CIGAR=1X;DP=6953;DPB=6953;DPRA=1.10578;EPP=4365.5;EPPR=10717.1;GTI=2;LEN=1;MEANALT=1.03774;MQM=59.9846;MQMR=59.9982;NS=94;NUMALT=1;ODDS=0.362655;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71971;QR=176600;RO=4938;RPL=1;RPP=4365.5;RPPR=10717.1;RPR=2012;RUN=1;SAF=0;SAP=4374.18;SAR=2013;SRF=0;SRP=10725.7;SRR=4938;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:26,28:26:928:28:993:-73.3203,0,-67.5826	0/1:90:27,63:27:968:63:2260:-176.57,0,-60.3447	0/1:194:94,100:94:3376:100:3551:-261.395,0,-245.655	0/0:53:53,0:53:1874:0:0:0,-15.9546,-168.935	0/0:52:50,2:50:1785:2:72:0,-8.81684,-154.094	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:81:36,45:36:1262:45:1611:-120.896,0,-89.495	0/1:83:57,26:57:2052:26:928:-58.8528,0,-159.966	0/1:41:20,21:20:716:21:752:-55.664,0,-52.4255	0/1:61:23,38:23:805:38:1368:-105.058,0,-54.4047	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:68:31,36:31:1116:36:1296:-96.4151,0,-80.2229	0/1:90:45,45:45:1620:45:1585:-115.844,0,-118.997	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:47:20,27:20:720:27:972:-73.6495,0,-50.9804	0/1:77:35,42:35:1256:42:1500:-112.115,0,-90.166	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:148:65,83:65:2309:83:2976:-223.52,0,-163.517	0/1:87:38,49:38:1368:49:1736:-130.332,0,-97.2312	0/0:129:129,0:129:4594:0:0:0,-38.8329,-413.623	0/1:51:20,31:20:686:31:1116:-85.3992,0,-46.7031	0/1:112:60,52:60:2141:52:1868:-134.684,0,-159.241	0/1:53:16,37:16:572:37:1328:-103.868,0,-35.8588	0/0:131:131,0:131:4678:0:0:0,-39.4349,-421.178	0/0:126:126,0:126:4494:0:0:0,-37.9298,-404.627	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:227:99,128:99:3537:128:4604:-346.188,0,-250.204	0/1:116:53,62:53:1876:62:2228:-165.806,0,-134.138	0/1:85:30,55:30:1080:55:1975:-152.437,0,-71.9257	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:177:97,80:97:3492:80:2868:-205.075,0,-261.207	0/0:154:154,0:154:5520:0:0:0,-46.3586,-496.925	0/1:80:33,47:33:1188:47:1672:-126.684,0,-83.1462	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:102:102,0:102:3608:0:0:0,-30.7051,-324.922	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.916	0/1:135:65,70:65:2317:70:2503:-184.883,0,-168.15	0/1:47:26,21:26:936:21:748:-53.4969,0,-70.4111	0/1:49:28,21:28:1008:21:756:-53.6168,0,-76.2859	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:64:29,35:29:1040:35:1256:-94.0794,0,-74.6484	0/0:105:105,0:105:3734:0:0:0,-31.6081,-336.259	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.957	0/1:93:29,64:29:1040:64:2287:-178.095,0,-65.9186	0/0:89:89,0:89:3177:0:0:0,-26.7917,-286.153	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:111:111,0:111:3965:0:0:0,-33.4143,-357.04	0/1:27:9,18:9:324:18:644:-50.1628,0,-21.378	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:98:31,67:31:1116:67:2400:-186.755,0,-71.2508	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:86:36,50:36:1296:50:1796:-136.034,0,-91.0554	0/0:147:147,0:147:5257:0:0:0,-44.2514,-473.265	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:112:109,3:109:3905:3:108:0,-23.6402,-341.566	0/0:141:140,1:140:5024:1:36:0,-38.847,-448.707	0/1:43:18,25:18:644:25:885:-67.0222,0,-45.3463	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:112:111,1:111:3947:1:36:0,-30.1171,-351.82	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:37:36,1:36:1288:1:36:0,-7.53983,-112.625	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/1:23:6,17:6:216:17:597:-47.132,0,-12.8668	0/1:118:34,84:34:1224:84:2993:-234.079,0,-74.9455	0/1:30:14,16:14:504:16:567:-42.3298,0,-36.6672	0/1:227:82,145:82:2944:145:5170:-397.106,0,-196.86	0/0:109:109,0:109:3897:0:0:0,-32.8123,-350.922	0/0:132:132,0:132:4650:0:0:0,-39.736,-418.659	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:95:95,0:95:3401:0:0:0,-28.5978,-306.303	0/0:150:150,0:150:5350:0:0:0,-45.1545,-481.631	0/1:91:52,39:52:1868:39:1396:-98.5454,0,-141.006	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:60:29,31:29:1036:31:1097:-80.9771,0,-75.4921	0/1:111:56,55:56:1993:55:1976:-144.7,0,-146.228	0/1:29:17,12:17:612:12:432:-30.4913,0,-46.6836	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:69:44,25:44:1576:25:891:-59.7377,0,-121.36	0/1:139:77,62:77:2753:62:2217:-157.95,0,-206.167	0/1:49:17,32:17:578:32:1129:-87.1659,0,-37.5869	0/0:69:69,0:69:2475:0:0:0,-20.7711,-223.003	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.233
chr06	17175975	.	AGA	GGA	100555	PASS	AB=0.439464;ABP=119.476;AC=136;AF=0.723404;AN=188;AO=4875;CIGAR=1X2M;DP=6969;DPB=6969;DPRA=28.1131;EPP=10519.6;EPPR=4439.4;GTI=2;LEN=1;MEANALT=1.34444;MQM=60;MQMR=59.9796;NS=94;NUMALT=1;ODDS=1.59581;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173299;QR=72644;RO=2059;RPL=8;RPP=10519.6;RPPR=4439.4;RPR=4867;RUN=1;SAF=0;SAP=10588.9;SAR=4875;SRF=0;SRP=4474.07;SRR=2059;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:28,25:28:994:25:892:-64.6451,0,-73.3276	0/1:91:65,26:65:2301:26:928:-56.4445,0,-179.956	0/1:200:103,97:103:3609:97:3480:-253.205,0,-264.811	1/1:52:0,51:0:0:51:1808:-162.639,-15.3525,0	1/1:50:2,48:2:70:48:1712:-147.718,-8.40417,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:56:0,55:0:0:55:1963:-176.585,-16.5567,0	0/1:82:47,35:47:1680:35:1256:-88.6608,0,-126.802	0/1:83:26,57:26:928:57:2026:-157.625,0,-58.8532	0/1:41:20,20:20:708:20:711:-51.9148,0,-51.6453	0/1:59:38,21:38:1336:21:722:-47.5356,0,-102.778	1/1:59:0,58:0:0:58:2054:-184.769,-17.4597,0	0/1:69:39,30:39:1364:30:1060:-74.9383,0,-102.285	0/1:91:47,44:47:1629:44:1567:-113.927,0,-119.501	1/1:51:0,51:0:0:51:1814:-163.54,-15.3525,0	0/1:47:27,20:27:969:20:720:-50.9804,0,-73.3792	0/1:82:43,38:43:1540:38:1336:-95.795,0,-114.15	1/1:47:0,47:0:0:47:1644:-148.243,-14.1484,0	1/1:49:0,46:0:0:46:1652:-148.618,-13.8474,0	0/1:148:84,63:84:2970:63:2228:-156.32,0,-223.07	0/1:87:50,37:50:1755:37:1305:-91.5607,0,-132.042	1/1:130:0,130:0:0:130:4606:-414.707,-39.1339,0	0/1:50:31,19:31:1096:19:677:-46.2064,0,-83.8975	0/1:113:52,60:52:1845:60:2148:-159.512,0,-132.254	0/1:53:37,16:37:1323:16:569:-35.5873,0,-103.418	1/1:128:0,127:0:0:127:4556:-409.954,-38.2308,0	1/1:125:0,124:0:0:124:4430:-398.512,-37.3277,0	1/1:17:0,17:0:0:17:603:-54.5995,-5.11751,0	0/1:224:126,96:126:4506:96:3417:-240.594,0,-338.56	0/1:115:65,50:65:2284:50:1800:-127.664,0,-171.204	0/1:87:57,29:57:2010:29:1023:-66.1329,0,-154.923	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:9:0,7:0:0:7:234:-21.0319,-2.10721,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:181:85,96:85:2991:96:3390:-250.828,0,-214.938	1/1:154:0,152:0:0:152:5408:-486.561,-45.7566,0	0/1:80:47,33:47:1662:33:1180:-82.4256,0,-125.784	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:101:0,101:0:0:101:3588:-323.127,-30.404,0	1/1:35:0,35:0:0:35:1225:-110.551,-10.5361,0	0/1:135:70,64:70:2487:64:2292:-165.844,0,-183.384	0/1:47:21,26:21:709:26:932:-70.0505,0,-49.9737	0/1:49:22,27:22:759:27:972:-73.0474,0,-53.8752	1/1:78:0,78:0:0:78:2756:-248.281,-23.4803,0	0/1:65:33,30:33:1177:30:1054:-75.9071,0,-86.975	1/1:104:0,104:0:0:104:3716:-334.641,-31.3071,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:94:66,28:66:2300:28:1000:-62.0186,0,-178.962	1/1:89:0,87:0:0:87:3105:-279.38,-26.1896,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:106:0,103:0:0:103:3658:-329.133,-31.0061,0	0/1:28:19,9:19:671:9:324:-21.077,0,-52.287	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	0/1:97:68,29:68:2398:29:1017:-62.6408,0,-186.876	1/1:40:0,40:0:0:40:1414:-127.556,-12.0412,0	0/0:3:3,0:3:105:0:0:0,-0.90309,-9.79597	1/1:17:0,17:0:0:17:597:-54.0561,-5.11751,0	0/1:86:52,33:52:1846:33:1176:-80.2005,0,-140.473	1/1:148:0,148:0:0:148:5233:-471.106,-44.5524,0	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	1/1:111:3,108:3:100:108:3837:-336.197,-24.0845,0	1/1:143:1,141:1:28:141:5005:-447.813,-40.2115,0	0/1:43:25,18:25:887:18:639:-44.894,0,-67.204	1/1:39:0,38:0:0:38:1356:-121.981,-11.4391,0	1/1:116:1,115:1:36:115:4048:-360.911,-31.3212,0	1/1:72:0,72:0:0:72:2551:-229.84,-21.6742,0	1/1:35:1,34:1:36:34:1208:-105.428,-6.93778,0	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	1/1:92:0,91:0:0:91:3238:-291.279,-27.3937,0	0/1:24:18,6:18:628:6:212:-12.2001,0,-49.6198	0/1:118:85,33:85:3003:33:1165:-69.6335,0,-234.981	0/1:31:17,14:17:580:14:500:-36.0042,0,-43.1878	0/1:230:148,80:148:5204:80:2868:-189.362,0,-399.509	1/1:110:0,110:0:0:110:3916:-352.633,-33.1133,0	1/1:134:0,134:0:0:134:4753:-427.928,-40.338,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	1/1:95:0,95:0:0:95:3365:-303.068,-28.5979,0	1/1:148:0,148:0:0:148:5274:-474.798,-44.5524,0	0/1:92:42,50:42:1473:50:1788:-133.508,0,-105.167	1/1:74:0,74:0:0:74:2629:-236.856,-22.2762,0	0/1:61:31,30:31:1096:30:1023:-74.0085,0,-80.587	0/1:116:58,58:58:2040:58:2054:-150.211,0,-148.95	0/1:31:14,17:14:498:17:612:-46.0815,0,-35.8236	1/1:64:0,63:0:0:63:2236:-201.27,-18.9649,0	1/1:55:0,55:0:0:55:1948:-175.593,-16.5567,0	0/1:69:25,44:25:881:44:1568:-120.641,0,-58.8364	0/1:143:65,78:65:2306:78:2778:-207.213,0,-164.754	0/1:49:32,17:32:1106:17:612:-40.663,0,-85.0921	1/1:67:2,65:2:72:65:2328:-202.943,-13.3323,0	1/1:55:0,54:0:0:54:1898:-170.823,-16.2556,0
chr06	17908243	.	A	G	157176	PASS	AB=0.502583;ABP=3.24588;AC=138;AF=0.741935;AN=186;AO=7384;CIGAR=1X;DP=9426;DPB=9426;DPRA=34.1413;EPP=16037.2;EPPR=4421.96;GTI=4;LEN=1;MEANALT=1.07609;MQM=59.3281;MQMR=59.8698;NS=93;NUMALT=1;ODDS=1.14245;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263551;QR=72843;RO=2035;RPL=0;RPP=16037.2;RPPR=4421.96;RPR=7384;RUN=1;SAF=7384;SAP=16037.2;SAR=0;SRF=2035;SRP=4421.96;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:11,10:11:392:10:360:-26.3505,0,-29.2984	0/1:153:79,74:79:2821:74:2643:-191.892,0,-208.07	0/1:136:78,58:78:2792:58:2084:-146.853,0,-210.58	1/1:276:0,276:0:0:276:9864:-887.138,-83.0843,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:123:0,123:0:0:123:4365:-392.822,-37.0267,0	0/1:144:85,59:85:3048:59:2101:-145.937,0,-231.201	0/1:40:13,27:13:464:27:972:-75.7567,0,-30.0563	0/1:81:42,39:42:1500:39:1400:-101.888,0,-110.91	0/1:46:23,23:23:828:23:824:-60.6222,0,-60.9967	1/1:77:1,76:1:36:76:2715:-242.426,-21.0927,0	0/1:75:34,41:34:1220:41:1464:-109.435,0,-87.5272	0/1:67:31,36:31:1112:36:1279:-95.2405,0,-80.2223	1/1:75:0,75:0:0:75:2683:-241.446,-22.5773,0	0/1:60:30,30:30:1072:30:1061:-77.7368,0,-78.7307	0/1:71:44,27:44:1580:27:964:-65.7033,0,-121.095	1/1:45:0,45:0:0:45:1612:-145.281,-13.5464,0	1/1:30:0,30:0:0:30:1076:-97.1116,-9.0309,0	0/1:197:125,72:125:4462:72:2584:-173.489,0,-342.445	0/1:131:64,67:64:2304:67:2389:-175.778,0,-168.186	1/1:132:0,131:0:0:131:4682:-421.251,-39.4349,0	0/1:86:50,36:50:1796:36:1269:-88.5992,0,-135.948	0/1:122:64,57:64:2269:57:2028:-145.733,0,-167.194	0/1:44:14,30:14:500:30:1080:-84.2679,0,-32.0909	1/1:389:0,389:0:0:389:13847:-1243.85,-117.101,0	1/1:249:0,249:0:0:249:8854:-796.57,-74.9565,0	1/1:41:0,41:0:0:41:1448:-130.577,-12.3422,0	0/1:224:107,117:107:3829:117:4166:-307.439,0,-277.374	0/1:125:43,81:43:1529:81:2900:-223.526,0,-100.214	0/1:132:48,84:48:1728:84:2993:-229.82,0,-116.042	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:241:111,130:111:3973:130:4653:-346.243,0,-285.155	1/1:208:0,208:0:0:208:7422:-667.47,-62.6142,0	0/1:53:26,27:26:932:27:972:-71.7354,0,-68.2443	.:.:.:.:.:.:.:.	1/1:124:0,124:0:0:124:4433:-398.886,-37.3277,0	1/1:28:0,28:0:0:28:989:-89.298,-8.42884,0	0/1:118:53,65:53:1900:65:2332:-174.551,0,-135.756	0/1:118:54,63:54:1929:63:2256:-167.662,0,-138.291	0/1:69:38,31:38:1364:31:1116:-79.9806,0,-102.288	1/1:97:0,97:0:0:97:3458:-311.218,-29.1999,0	0/1:113:63,50:63:2268:50:1776:-126.048,0,-170.363	1/1:255:1,253:1:36:253:9076:-813.088,-73.2232,0	1/1:240:0,240:0:0:240:8541:-768.449,-72.2472,0	0/1:150:66,84:66:2353:84:3016:-226.462,0,-166.822	1/1:122:0,122:0:0:122:4369:-393.272,-36.7257,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:137:0,137:0:0:137:4899:-440.848,-41.2411,0	0/1:32:9,23:9:324:23:820:-64.4105,0,-19.8729	0/1:13:7,6:7:252:6:215:-15.7566,0,-19.1156	0/1:141:65,76:65:2313:76:2705:-201.101,0,-165.984	1/1:37:0,37:0:0:37:1301:-117.375,-11.1381,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:34:15,19:15:540:19:684:-51.6171,0,-38.7015	1/1:122:0,122:0:0:122:4376:-393.972,-36.7257,0	0/1:9:2,7:2:72:7:252:-20.3058,0,-4.12745	1/1:366:0,366:0:0:366:13082:-1176.47,-110.177,0	1/1:218:7,211:7:252:211:7511:-651.761,-42.5956,0	0/1:55:25,30:25:900:30:1080:-80.9566,0,-64.7644	1/1:127:0,127:0:0:127:4531:-407.601,-38.2308,0	1/1:193:1,192:1:36:192:6850:-611.959,-54.5005,0	1/1:91:0,91:0:0:91:3245:-291.83,-27.3937,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:81:0,81:0:0:81:2889:-260.081,-24.3834,0	1/1:76:0,76:0:0:76:2724:-245.365,-22.8783,0	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:70:22,48:22:784:48:1715:-133.501,0,-49.8118	0/1:81:32,49:32:1148:49:1719:-130.432,0,-79.2464	0/1:155:87,68:87:3113:68:2436:-172.708,0,-233.597	1/1:175:0,175:0:0:175:6234:-561.037,-52.6803,0	1/1:50:0,50:0:0:50:1784:-160.839,-15.0515,0	1/1:113:1,112:1:36:112:4020:-357.815,-30.4181,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:92:3,89:3:108:89:3169:-275.314,-17.6196,0	1/1:151:0,151:0:0:151:5373:-483.079,-45.4555,0	1/1:229:0,228:0:0:228:8125:-730.458,-68.6348,0	0/1:115:62,53:62:2220:53:1864:-133.384,0,-165.446	1/1:67:0,67:0:0:67:2412:-217.132,-20.169,0	0/1:112:58,54:58:2084:54:1932:-140.4,0,-154.092	0/1:174:84,89:84:3012:89:3200:-235.784,0,-218.864	0/1:45:28,17:28:1000:17:608:-41.5057,0,-76.769	1/1:98:0,98:0:0:98:3497:-314.722,-29.5009,0	1/1:61:0,61:0:0:61:2183:-196.521,-18.3628,0	0/1:36:26,10:26:936:10:341:-20.1807,0,-73.7224	0/1:68:31,37:31:1108:37:1322:-98.6597,0,-79.5518	0/1:75:48,27:48:1708:27:960:-64.0702,0,-131.429	1/1:193:0,193:0:0:193:6845:-615.713,-58.0988,0	1/1:90:0,90:0:0:90:3232:-290.903,-27.0927,0
chr06	17913454	.	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chr06	17913463	.	G	C	30298.6	PASS	AB=0.452925;ABP=87.2412;AC=47;AF=0.252688;AN=186;AO=1992;CIGAR=1X;DP=10309;DPB=10309;DPRA=0.839638;EPP=4319.9;EPPR=18037.1;GTI=4;LEN=1;MEANALT=1.09259;MQM=59.9011;MQMR=59.9584;NS=93;NUMALT=1;ODDS=0.41128;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69456;QR=278829;RO=8309;RPL=0;RPP=4328.58;RPPR=1034.82;RPR=1992;RUN=1;SAF=1;SAP=4319.9;SAR=1991;SRF=3160;SRP=1036.9;SRR=5149;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:6,7:6:192:7:235:-17.5646,0,-13.6717	0/1:70:25,45:25:784:45:1595:-122.767,0,-49.7762	0/1:114:41,72:41:1385:72:2556:-195.913,0,-90.5646	0/0:276:276,0:276:9148:0:0:0,-83.0843,-823.172	0/0:43:42,1:42:1405:1:32:0,-9.74498,-123.537	0/0:38:38,0:38:1245:0:0:0,-11.4391,-112.342	0/0:210:210,0:210:7074:0:0:0,-63.2163,-636.75	0/1:108:57,51:57:1815:51:1767:-126.795,0,-131.104	0/1:95:51,44:51:1654:44:1537:-110.021,0,-120.537	0/1:119:82,37:82:2794:37:1274:-79.1335,0,-215.875	0/1:115:65,50:65:2139:50:1720:-120.451,0,-158.152	0/0:85:85,0:85:2599:0:0:0,-25.5875,-234.157	0/1:83:35,48:35:1134:48:1663:-124.971,0,-77.3665	0/1:67:21,46:21:654:46:1612:-125.198,0,-38.9863	0/0:145:145,0:145:4903:0:0:0,-43.6493,-441.389	0/1:51:19,31:19:579:31:1073:-81.5714,0,-37.0967	0/1:80:22,58:22:699:58:2039:-159.699,0,-39.1263	0/0:31:31,0:31:970:0:0:0,-9.33193,-87.5891	0/0:37:37,0:37:1199:0:0:0,-11.1381,-108.199	0/1:234:123,111:123:4228:111:3904:-281.115,0,-310.267	0/1:111:76,35:76:2456:35:1183:-73.3255,0,-187.876	0/0:145:145,0:145:4851:0:0:0,-43.6493,-436.751	0/1:105:83,22:83:2858:22:788:-39.6366,0,-225.844	0/1:50:14,36:14:448:36:1255:-98.1948,0,-25.5742	0/1:66:27,39:27:860:39:1383:-104.877,0,-57.8235	0/0:424:424,0:424:14687:0:0:0,-127.637,-1320.99	0/0:223:222,1:222:7229:1:36:0,-63.5314,-647.118	0/0:27:27,0:27:832:0:0:0,-8.12781,-75.1676	0/1:269:156,113:156:5177:113:3972:-276.696,0,-385.11	0/1:72:20,52:20:651:52:1826:-142.942,0,-37.2228	0/1:135:81,54:81:2705:54:1898:-130.456,0,-202.565	0/0:5:5,0:5:168:0:0:0,-1.50515,-15.4509	0/0:12:12,0:12:403:0:0:0,-3.61236,-36.5931	0/1:4:2,2:2:53:2:72:-5.6326,0,-3.83018	0/1:8:3,5:3:74:5:176:-13.7768,0,-4.49768	0/0:22:22,0:22:693:0:0:0,-6.62266,-62.6659	0/1:308:193,115:193:6519:115:3940:-262.082,0,-494.105	0/0:79:79,0:79:2573:0:0:0,-23.7814,-231.812	0/1:74:28,46:28:909:46:1567:-119.037,0,-59.8328	.:.:.:.:.:.:.:.	0/0:94:94,0:94:3149:0:0:0,-28.2968,-283.64	0/0:36:36,0:36:1154:0:0:0,-10.8371,-104.148	0/1:130:59,71:59:1956:71:2516:-187.557,0,-137.174	0/1:108:74,34:74:2502:34:1181:-74.081,0,-192.922	0/1:104:79,25:79:2711:25:855:-45.9529,0,-212.928	0/0:143:142,0:142:4829:0:0:0,-42.7463,-434.416	0/1:98:54,44:54:1764:44:1507:-106.392,0,-129.53	0/0:189:189,0:189:6326:0:0:0,-56.8947,-569.46	0/0:182:182,0:182:6184:0:0:0,-54.7875,-556.675	0/1:140:93,47:93:3115:47:1671:-108.532,0,-238.435	0/0:191:191,0:191:6421:0:0:0,-57.4967,-578.003	0/1:7:5,2:5:176:2:61:-3.68602,0,-14.0778	0/0:52:51,1:51:1672:1:36:0,-12.0553,-147.158	0/1:79:66,13:66:2232:13:452:-17.2297,0,-177.359	0/1:10:4,6:4:140:6:207:-15.9543,0,-9.93428	0/1:81:27,54:27:884:54:1905:-147.342,0,-55.476	0/0:48:48,0:48:1570:0:0:0,-14.4494,-141.58	0/1:25:15,10:15:510:10:360:-25.2186,0,-38.6963	0/0:26:26,0:26:891:0:0:0,-7.82678,-80.502	0/1:73:40,33:40:1290:33:1167:-83.3612,0,-94.3878	0/0:200:198,2:198:6763:2:72:0,-53.3693,-601.878	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:247:247,0:247:8447:0:0:0,-74.3544,-760.266	0/0:360:358,1:358:12421:1:36:0,-104.786,-1114.21	0/1:75:38,37:38:1251:37:1306:-95.2627,0,-90.3037	0/0:127:127,0:127:4215:0:0:0,-38.2308,-379.537	0/0:242:239,3:239:8311:3:108:0,-62.7741,-737.945	0/0:191:190,0:190:6469:0:0:0,-57.1957,-582.065	0/0:46:45,1:45:1434:1:32:0,-10.6481,-126.137	0/0:43:43,0:43:1359:0:0:0,-12.9443,-122.584	0/0:165:165,0:165:5721:0:0:0,-49.6699,-515.016	0/1:35:18,17:18:591:17:588:-42.6924,0,-42.9569	0/1:68:42,26:42:1343:26:898:-60.6597,0,-100.682	0/1:66:29,37:29:964:37:1303:-97.7026,0,-67.1925	0/1:74:32,42:32:1027:42:1481:-111.249,0,-70.4477	0/0:214:214,0:214:7428:0:0:0,-64.4204,-668.582	0/0:129:129,0:129:4259:0:0:0,-38.8329,-383.498	0/0:85:85,0:85:2781:0:0:0,-25.5875,-250.531	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:77:77,0:77:2494:0:0:0,-23.1793,-224.708	0/0:87:87,0:87:2884:0:0:0,-26.1896,-259.795	0/0:382:382,0:382:13032:0:0:0,-114.993,-1172.71	0/1:141:92,49:92:3200:49:1681:-109.127,0,-245.78	0/0:132:132,0:132:4398:0:0:0,-39.736,-396.001	0/1:141:91,50:91:3076:50:1751:-115.426,0,-234.624	0/1:231:163,68:163:5529:68:2339:-141.216,0,-428.127	0/1:41:12,29:12:380:29:988:-76.8834,0,-22.1651	0/0:57:57,0:57:1801:0:0:0,-17.1587,-162.283	0/0:76:76,0:76:2407:0:0:0,-22.8783,-216.883	0/1:69:30,39:30:994:39:1379:-103.637,0,-68.9892	0/1:129:55,71:55:1712:71:2418:-179.575,0,-116.074	0/1:92:36,56:36:1213:56:1947:-147.808,0,-81.7706	0/0:83:83,0:83:2791:0:0:0,-24.9855,-251.429	0/0:222:222,0:222:7556:0:0:0,-66.8287,-680.112
chr06	18768158	.	ATTAG	GTTAA,GTTAG	75941.5	PASS	AB=0.390932,0.603023;ABP=208.112,186.006;AC=138,48;AF=0.741935,0.258065;AN=186;AO=2420,1207;CIGAR=1X3M1X,1X4M;DP=3650;DPB=3650;DPRA=0,1.34046;EPP=5257.97,2623.98;EPPR=5.18177;GTI=5;LEN=5,1;MEANALT=1.8172,2.25926;MQM=54.4368,59.652;MQMR=60;NS=93;NUMALT=2;ODDS=0.806565;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=85532,43073;QR=36;RO=1;RPL=2420,1207;RPP=5257.97,2623.98;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=5257.97,2623.98;SAR=2420,1207;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,9,16:0:0:9,16:319,568:-72.3259,-46.5903,-43.881,-26.088,0,-21.2715	1/2:40:0,20,20:0:0:20,20:707,716:-115.968,-58.7307,-52.7101,-57.5922,0,-51.5716	1/2:54:0,20,34:0:0:20,34:701,1212:-155.72,-99.087,-93.0664,-56.9836,0,-46.7486	1/1:97:0,96,1:0:0:96,1:3381,36:-303.251,-28.8989,0,-300.314,-25.6016,-300.013	1/1:12:0,12,0:0:0:12,0:427,0:-38.5897,-3.61236,0,-38.5897,-3.61236,-38.5897	1/1:6:0,6,0:0:0:6,0:210,0:-18.7707,-1.80618,0,-18.7707,-1.80618,-18.7707	1/1:49:0,48,1:0:0:48,1:1705,36:-153.123,-14.4494,0,-150.186,-11.1522,-149.885	1/2:56:0,18,37:0:0:18,37:638,1324:-159.924,-108.084,-102.665,-51.9584,0,-40.8203	1/2:52:0,17,34:0:0:17,34:611,1220:-149.198,-99.4884,-94.3709,-49.7091,0,-39.4741	1/2:55:0,29,26:0:0:29,26:1029,927:-159.611,-75.9182,-67.1884,-84.048,0,-76.2212	1/2:23:0,8,14:0:0:8,14:286,492:-63.3519,-40.0476,-37.6393,-23.3083,0,-19.0939	1/1:26:0,26,0:0:0:26,0:916,0:-82.4975,-7.82678,0,-82.4975,-7.82678,-82.4975	1/2:40:0,13,27:0:0:13,27:463,959:-115.973,-78.4844,-74.571,-37.8425,0,-29.7147	1/2:45:0,12,31:0:0:12,31:427,1112:-125.504,-90.7548,-87.1424,-34.8017,0,-25.4698	1/1:30:0,30,0:0:0:30,0:1073,0:-96.7144,-9.0309,0,-96.7144,-9.0309,-96.7144	1/2:28:0,12,15:0:0:12,15:427,518:-76.8195,-42.0697,-38.4573,-34.7416,0,-30.2262	1/2:23:0,15,8:0:0:15,8:534,288:-67.0814,-23.8592,-19.3437,-43.5799,0,-41.1716	1/1:20:0,20,0:0:0:20,0:705,0:-63.6059,-6.0206,0,-63.6059,-6.0206,-63.6059	1/2:15:0,5,10:0:0:5,10:176,360:-44.0242,-29.734,-28.2289,-14.6442,0,-11.6339	1/2:65:0,21,43:0:0:21,43:750,1536:-186.313,-125.226,-118.904,-61.0845,0,-48.1402	1/2:56:0,22,34:0:0:22,34:781,1211:-162.6,-99.0605,-92.4378,-63.8944,0,-53.6594	1/1:32:0,31,0:0:0:31,0:1068,0:-96.1292,-9.33193,0,-96.1292,-9.33193,-96.1292	1/2:50:0,16,33:0:0:16,33:569,1188:-143.25,-96.9234,-92.1069,-46.3241,0,-36.3902	1/2:33:0,30,3:0:0:30,3:1047,108:-94.0865,-9.17208,-0.14118,-85.2732,0,-84.3701	1/2:17:0,3,14:0:0:3,14:107,504:-50.0579,-41.3486,-40.4455,-9.06576,0,-4.85134	1/1:102:0,99,2:0:0:99,2:3480,72:-312.746,-29.802,0,-306.871,-23.8606,-306.269	1/2:92:0,28,64:0:0:28,64:1001,2271:-266.748,-185.377,-176.948,-81.7263,0,-62.4604	1/2:21:0,9,12:0:0:9,12:323,432:-61.9148,-35.6088,-32.8996,-26.6649,0,-23.0525	1/2:101:0,19,81:0:0:19,81:665,2887:-289.525,-235.436,-229.716,-54.1926,0,-29.8092	1/2:35:0,23,12:0:0:23,12:812,432:-101.505,-35.6088,-28.6851,-66.2531,0,-62.6408	1/2:57:0,20,37:0:0:20,37:709,1324:-166.038,-108.324,-102.303,-58.0696,0,-46.9315	1/1:4:0,4,0:0:0:4,0:144,0:-13.2947,-1.20412,0,-13.2947,-1.20412,-13.2947	1/1:1:0,1,0:0:0:1,0:36,0:-3.59317,-0.30103,0,-3.59317,-0.30103,-3.59317	1/1:1:0,1,0:0:0:1,0:36,0:-3.58923,-0.30103,0,-3.58923,-0.30103,-3.58923	1/1:1:0,1,0:0:0:1,0:36,0:-3.58923,-0.30103,0,-3.58923,-0.30103,-3.58923	1/1:4:0,4,0:0:0:4,0:143,0:-12.9628,-1.20412,0,-12.9628,-1.20412,-12.9628	1/2:134:0,61,72:0:0:61,72:2168,2555:-384.647,-208.189,-189.826,-176.539,0,-154.865	1/1:38:0,37,0:0:0:37,0:1315,0:-118.144,-11.1381,0,-118.144,-11.1381,-118.144	1/2:29:0,13,16:0:0:13,16:456,561:-83.0093,-45.9924,-42.0791,-37.3669,0,-32.5504	.:.:.:.:.:.:.:.	1/2:56:0,19,37:0:0:19,37:681,1323:-163.687,-108.232,-102.513,-55.8127,0,-44.6746	1/1:8:0,8,0:0:0:8,0:286,0:-26.0499,-2.40824,0,-26.0499,-2.40824,-26.0499	1/2:51:0,15,36:0:0:15,36:536,1279:-148.199,-104.571,-100.055,-43.9841,0,-33.147	1/2:29:0,13,16:0:0:13,16:467,576:-85.4226,-47.3585,-43.4451,-38.4234,0,-33.6069	1/1:33:0,32,0:0:0:32,0:1120,0:-100.466,-9.63296,0,-100.466,-9.63296,-100.466	1/1:25:0,25,0:0:0:25,0:880,0:-79.3166,-7.52575,0,-79.3166,-7.52575,-79.3166	1/2:26:0,18,8:0:0:18,8:635,284:-75.0641,-23.4951,-18.0766,-51.9229,0,-49.5147	1/1:46:0,41,3:0:0:41,3:1461,104:-130.845,-12.3422,0,-122.395,-3.8749,-121.492	1/1:21:0,21,0:0:0:21,0:745,0:-67.2218,-6.32163,0,-67.2218,-6.32163,-67.2218	1/2:75:0,27,48:0:0:27,48:943,1722:-216.995,-140.788,-132.66,-76.558,0,-62.1085	1/1:53:0,53,0:0:0:53,0:1889,0:-170.131,-15.9546,0,-170.131,-15.9546,-170.131	1/2:4:0,1,3:0:0:1,3:36,104:-11.7381,-8.79971,-8.49868,-3.29465,0,-2.39156	1/1:35:0,34,0:0:0:34,0:1212,0:-108.651,-10.235,0,-108.651,-10.235,-108.651	1/2:34:0,6,28:0:0:6,28:206,996:-98.2456,-81.526,-79.7199,-17.0648,0,-8.63599	1/2:5:0,1,4:0:0:1,4:36,144:-15.0386,-12.1095,-11.8085,-3.2882,0,-2.08408	1/2:29:0,14,15:0:0:14,15:500,532:-84.1865,-43.693,-39.4786,-40.8482,0,-36.3327	1/1:6:0,6,0:0:0:6,0:214,0:-19.2205,-1.80618,0,-19.2205,-1.80618,-19.2205	1/2:6:0,2,4:0:0:2,4:72,144:-17.9264,-12.1095,-11.5074,-6.17466,0,-4.97054	1/1:5:0,5,0:0:0:5,0:162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chr06	18820605	.	C	T	32397.3	PASS	AB=0.417254;ABP=323.56;AC=51;AF=0.271277;AN=188;AO=2264;CIGAR=1X;DP=11701;DPB=11701;DPRA=0.95272;EPP=4919.22;EPPR=20495.2;GTI=9;LEN=1;MEANALT=1;MQM=59.7473;MQMR=59.8852;NS=94;NUMALT=1;ODDS=0.829834;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78057;QR=335297;RO=9437;RPL=0;RPP=4919.22;RPPR=20486.5;RPR=2264;RUN=1;SAF=0;SAP=4919.22;SAR=2264;SRF=1;SRP=20486.5;SRR=9436;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:49,34:49:1751:34:1158:-79.535,0,-132.886	0/1:84:56,28:56:1976:28:975:-62.7726,0,-152.687	0/1:532:298,234:298:10568:234:8044:-563.841,0,-790.811	0/0:332:332,0:332:11746:0:0:0,-99.942,-1056.74	0/0:136:136,0:136:4849:0:0:0,-40.9401,-436.434	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/0:100:100,0:100:3529:0:0:0,-30.103,-317.802	0/1:213:104,109:104:3699:109:3757:-274.194,0,-268.987	0/1:141:82,59:82:2936:59:2038:-141.244,0,-222.023	0/1:105:62,43:62:2228:43:1497:-103.408,0,-169.176	0/1:28:23,5:23:811:5:180:-8.12322,0,-64.8811	0/0:71:71,0:71:2518:0:0:0,-21.3731,-226.737	0/1:41:22,19:22:784:19:643:-45.8362,0,-58.5417	0/1:27:22,5:22:780:5:167:-7.2306,0,-62.2043	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:36:23,13:23:811:13:448:-29.8073,0,-62.4729	0/1:19:10,9:10:352:9:311:-22.6042,0,-26.2971	0/0:29:28,1:28:996:1:32:0,-5.53124,-86.7486	0/1:17:15,2:15:536:2:72:-1.71921,0,-43.4558	0/1:262:150,112:150:5361:112:3891:-271.022,0,-403.751	0/1:175:97,78:97:3414:78:2679:-188.677,0,-254.791	0/0:226:226,0:226:8055:0:0:0,-68.0328,-724.974	0/1:188:117,71:117:4148:71:2456:-164.696,0,-316.911	0/0:79:77,2:77:2743:2:59:0,-18.1772,-241.507	0/1:130:70,60:70:2484:60:2052:-145.82,0,-184.678	0/0:417:417,0:417:14851:0:0:0,-125.53,-1335.19	0/1:284:150,134:150:5286:134:4612:-329.742,0,-389.604	0/1:22:15,7:15:527:7:239:-15.2201,0,-41.1375	0/1:387:222,165:222:7916:165:5719:-398.347,0,-595.94	0/1:165:116,49:116:4134:49:1714:-104.851,0,-322.572	0/1:130:68,62:68:2403:62:2168:-156.252,0,-177.391	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7439	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:12:9,3:9:320:3:99:-5.62422,0,-25.53	0/0:20:20,0:20:699:0:0:0,-6.0206,-62.2068	0/1:98:66,32:66:2302:32:1124:-71.9303,0,-177.938	0/0:181:181,0:181:6444:0:0:0,-54.4864,-579.925	0/1:21:12,9:12:419:9:315:-22.3656,0,-31.7179	1/1:5:0,5:0:0:5:169:-15.5426,-1.50515,0	0/1:188:107,81:107:3811:81:2766:-192.576,0,-286.589	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:254:138,116:138:4940:116:3973:-281.296,0,-368.28	0/1:24:19,5:19:675:5:171:-8.50073,0,-53.8522	0/0:36:36,0:36:1267:0:0:0,-10.8371,-114.287	0/0:184:184,0:184:6527:0:0:0,-55.3895,-587.505	0/1:217:114,103:114:4027:103:3532:-252.745,0,-297.279	0/0:284:284,0:284:10088:0:0:0,-85.4925,-907.824	0/0:201:201,0:201:7165:0:0:0,-60.507,-644.908	0/1:165:96,69:96:3435:69:2401:-166.666,0,-259.693	0/0:231:230,1:230:8151:1:32:0,-66.3386,-730.407	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.5925	0/0:194:194,0:194:6931:0:0:0,-58.3998,-623.844	0/1:104:68,36:68:2436:36:1259:-82.3023,0,-188.188	0/1:27:14,13:14:496:13:455:-33.1523,0,-36.8465	0/1:235:141,94:141:5000:94:3234:-220.518,0,-379.349	0/0:95:95,0:95:3366:0:0:0,-28.5978,-303.113	0/1:30:16,14:16:568:14:492:-35.5814,0,-42.421	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6957	0/1:89:53,36:53:1873:36:1236:-84.7497,0,-142.053	0/0:87:86,1:86:3045:1:36:0,-22.5913,-270.682	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:291:291,0:291:10347:0:0:0,-87.5997,-931.149	0/0:282:281,1:281:9968:1:32:0,-81.6911,-893.851	0/1:79:48,31:48:1716:31:1075:-73.276,0,-130.944	0/1:135:77,58:77:2715:58:1970:-136.931,0,-203.954	0/0:283:282,1:282:10032:1:36:0,-81.5932,-899.221	0/0:198:197,1:197:6962:1:36:0,-56.0057,-623.043	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:88:88,0:88:3110:0:0:0,-26.4906,-280.129	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.866	0/1:29:16,13:16:554:13:431:-30.3793,0,-41.455	0/0:250:250,0:250:8776:0:0:0,-75.2575,-789.705	0/1:94:52,42:52:1841:42:1466:-103.927,0,-137.67	0/1:217:128,89:128:4516:89:3062:-210.484,0,-341.285	0/0:236:235,1:235:8423:1:36:0,-67.4448,-754.467	0/0:236:236,0:236:8396:0:0:0,-71.0431,-755.608	0/0:153:153,0:153:5457:0:0:0,-46.0576,-491.251	0/1:23:16,7:16:572:7:239:-14.9144,0,-44.8897	0/0:162:162,0:162:5787:0:0:0,-48.7669,-520.942	0/0:112:112,0:112:3986:0:0:0,-33.7154,-358.926	0/0:391:390,1:390:13906:1:32:0,-114.504,-1248.09	0/1:48:36,12:36:1288:12:412:-22.9598,0,-101.774	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/1:22:12,10:12:399:10:335:-23.8518,0,-29.6081	0/1:64:39,25:39:1384:25:884:-60.612,0,-105.593	0/1:22:9,13:9:324:13:427:-32.122,0,-22.8832	0/0:57:57,0:57:2030:0:0:0,-17.1587,-182.968	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.988	0/1:17:12,5:12:428:5:176:-11.0675,0,-33.7413	0/1:55:35,20:35:1244:20:685:-45.4106,0,-95.7076	0/1:34:25,9:25:883:9:306:-17.6336,0,-69.4201	0/0:203:203,0:203:7218:0:0:0,-61.1091,-649.631	0/0:104:104,0:104:3673:0:0:0,-31.3071,-330.776
chr06	18820613	.	A	G	200061	PASS	AB=0.572149;ABP=253.996;AC=137;AF=0.728723;AN=188;AO=9541;CIGAR=1X;DP=11933;DPB=11933;DPRA=25.6516;EPP=20712.3;EPPR=5186.31;GTI=7;LEN=1;MEANALT=1.05376;MQM=59.8664;MQMR=59.7884;NS=94;NUMALT=1;ODDS=2.12185;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=337727;QR=85157;RO=2387;RPL=2;RPP=20703.7;RPPR=5186.31;RPR=9539;RUN=1;SAF=1;SAP=20712.3;SAR=9540;SRF=0;SRP=5186.31;SRR=2387;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:35,51:35:1243:51:1816:-137.831,0,-86.2807	0/1:85:30,55:30:1059:55:1905:-146.072,0,-70.0267	0/1:545:244,301:244:8717:301:10615:-790.971,0,-620.317	1/1:338:0,338:0:0:338:11969:-1077.03,-101.748,0	1/1:139:0,139:0:0:139:4938:-444.388,-41.8432,0	1/1:42:0,42:0:0:42:1486:-134.033,-12.6433,0	1/1:103:0,103:0:0:103:3637:-327.528,-31.0061,0	0/1:220:112,108:112:3994:108:3837:-279.271,0,-293.373	0/1:145:60,85:60:2148:85:3006:-227.114,0,-149.932	0/1:112:46,66:46:1644:66:2338:-176.963,0,-114.526	0/1:29:5,24:5:180:24:825:-65.8308,0,-7.82219	1/1:73:0,73:0:0:73:2592:-233.518,-21.9752,0	0/1:41:19,21:19:671:21:744:-54.8836,0,-48.3059	0/1:28:5,23:5:180:23:800:-63.8684,0,-8.12322	1/1:45:0,45:0:0:45:1594:-143.749,-13.5464,0	0/1:37:12,25:12:428:25:877:-68.1023,0,-27.7207	0/1:20:10,10:10:352:10:360:-26.7221,0,-25.9976	1/1:28:0,28:0:0:28:971:-87.6904,-8.42884,0	0/1:17:2,15:2:72:15:531:-43.0028,0,-1.71921	0/1:275:121,153:121:4328:153:5468:-409.559,0,-306.995	0/1:177:78,99:78:2800:99:3504:-262.264,0,-198.957	1/1:227:0,227:0:0:227:8017:-721.557,-68.3338,0	0/1:195:80,115:80:2849:115:4047:-305.718,0,-197.942	1/1:81:3,78:3:108:78:2707:-233.795,-14.3083,0	0/1:138:68,70:68:2427:70:2503:-183.977,0,-177.143	1/1:416:0,416:0:0:416:14770:-1328.95,-125.228,0	0/1:301:147,154:147:5268:154:5473:-401.797,0,-383.606	0/1:22:7,15:7:252:15:527:-41.1375,0,-16.4063	0/1:401:176,225:176:6267:225:7941:-593.973,0,-443.404	0/1:165:50,115:50:1792:115:4061:-316.005,0,-111.86	0/1:135:66,69:66:2359:69:2449:-180.025,0,-171.927	1/1:10:0,10:0:0:10:360:-32.7439,-3.0103,0	1/1:44:0,44:0:0:44:1556:-140.329,-13.2453,0	1/1:13:0,13:0:0:13:445:-40.2156,-3.91339,0	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	1/1:21:0,21:0:0:21:737:-66.5168,-6.32163,0	0/1:98:35,63:35:1251:63:2217:-170.262,0,-83.307	1/1:184:0,183:0:0:183:6425:-577.856,-55.0885,0	0/1:24:10,14:10:360:14:483:-36.5665,0,-25.5196	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1849	0/1:197:86,111:86:3077:111:3945:-295.935,0,-217.809	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:263:124,139:124:4439:139:4940:-365.569,0,-320.483	0/1:24:5,19:5:180:19:669:-53.3092,0,-9.32734	1/1:35:0,35:0:0:35:1234:-111.318,-10.5361,0	1/1:188:0,188:0:0:188:6632:-596.952,-56.5936,0	0/1:228:113,115:113:4010:115:4100:-300.538,0,-292.41	1/1:275:0,275:0:0:275:9762:-878.512,-82.7833,0	1/1:201:0,201:0:0:201:7067:-636.092,-60.507,0	0/1:163:67,96:67:2389:96:3365:-253.996,0,-166.188	1/1:238:0,237:0:0:237:8419:-757.338,-71.3441,0	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	1/1:198:0,198:0:0:198:7001:-630.145,-59.6039,0	0/1:105:36,69:36:1275:69:2424:-186.807,0,-83.4427	0/1:26:12,14:12:428:14:489:-36.5121,0,-31.0274	0/1:242:101,141:101:3590:141:4987:-376.099,0,-250.421	1/1:92:0,92:0:0:92:3265:-294.071,-27.6948,0	0/1:28:14,14:14:500:14:504:-37.2693,0,-36.9073	1/1:15:0,15:0:0:15:540:-48.9342,-4.51545,0	0/1:92:39,53:39:1396:53:1881:-141.87,0,-98.2443	1/1:89:1,88:1:36:88:3087:-274.458,-23.1934,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:298:0,298:0:0:298:10586:-952.592,-89.7069,0	1/1:285:1,284:1:21:284:10091:-906.01,-83.6936,0	0/1:82:35,47:35:1233:47:1666:-125.541,0,-86.5876	0/1:141:61,80:61:2188:80:2859:-215.097,0,-154.736	1/1:287:1,286:1:36:286:10126:-907.679,-82.7973,0	1/1:196:1,195:1:36:195:6919:-619.171,-55.4036,0	1/1:25:0,25:0:0:25:864:-78.0723,-7.52575,0	1/1:90:0,90:0:0:90:3168:-285.343,-27.0927,0	1/1:32:0,32:0:0:32:1152:-103.988,-9.63296,0	0/1:32:17,15:17:608:15:536:-38.9419,0,-45.4191	1/1:251:0,251:0:0:251:8845:-796.029,-75.5585,0	0/1:95:41,54:41:1472:54:1925:-144.925,0,-104.169	0/1:223:92,131:92:3268:131:4662:-352.608,0,-227.205	1/1:244:1,243:1:36:243:8638:-773.813,-69.853,0	1/1:235:0,235:0:0:235:8373:-753.542,-70.7421,0	1/1:155:0,155:0:0:155:5493:-494.489,-46.6597,0	0/1:24:7,17:7:252:17:612:-48.1887,0,-15.7996	1/1:164:0,164:0:0:164:5800:-522.094,-49.3689,0	1/1:119:0,119:0:0:119:4231:-380.967,-35.8226,0	1/1:397:1,395:1:36:395:13975:-1253.91,-115.969,0	0/1:46:13,33:13:464:33:1169:-91.6679,0,-28.2501	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	0/1:22:12,10:12:423:10:347:-24.941,0,-31.7824	0/1:65:25,40:25:883:40:1428:-109.25,0,-60.2205	0/1:22:13,9:13:460:9:324:-22.8832,0,-35.1112	1/1:56:0,56:0:0:56:1990:-179.368,-16.8577,0	1/1:60:0,60:0:0:60:2110:-190.16,-18.0618,0	0/1:17:5,12:5:180:12:428:-33.7413,0,-11.4346	0/1:51:16,35:16:572:35:1229:-95.5585,0,-36.4609	0/1:34:9,25:9:312:25:884:-69.4343,0,-18.1803	1/1:206:0,206:0:0:206:7245:-652.091,-62.0122,0	1/1:105:0,105:0:0:105:3703:-333.469,-31.6082,0
chr06	18915465	.	CTTC	TTTC,TTTT	374919	PASS	AB=0.499864,0.498909;ABP=3.01148,3.08614;AC=136,52;AF=0.723404,0.276596;AN=188;AO=10164,3693;CIGAR=1X3M,1X2M1X;DP=13886;DPB=13894.2;DPRA=18.6532,1.45248;EPP=22056.5,8004.9;EPPR=26.8965;GTI=1;LEN=1,4;MEANALT=1.89247,2.18182;MQM=55.2523,51.2789;MQMR=60;NS=94;NUMALT=2;ODDS=7.87586;PAIRED=0,0;PAIREDR=0;PAO=14,14;PQA=422,422;PQR=0;PRO=0;QA=361822,129818;QR=378;RO=11;RPL=5043,1937;RPP=4.31011,22.2737;RPPR=7.94546;RPR=5121,1756;RUN=1,1;SAF=5041,1937;SAP=4.44684,22.2737;SAR=5123,1756;SRF=3;SRP=7.94546;SRR=8;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:72:0,27,44:0:0:27,44:972,1550:-204.392,-125.484,-117.356,-78.9512,0,-65.7059	1/2:145:0,64,81:0:0:64,81:2291,2874:-419.032,-232.884,-213.618,-186.445,0,-162.061	1/2:183:0,87,96:0:0:87,96:3124,3380:-527.523,-273.772,-247.583,-254.105,0,-225.206	1/1:299:0,297,1:0:0:297,1:10548,36:-947.948,-89.4059,0,-945.01,-86.4684,-944.709	1/1:72:2,70,0:2:72:70,0:2470,0:-215.274,-14.8374,0,-215.876,-21.0721,-221.751	1/1:60:0,60,0:0:0:60,0:2109,0:-188.918,-18.0618,0,-188.918,-18.0618,-188.918	1/1:124:3,118,3:3:97:118,3:4212,107:-369.354,-27.7145,0,-361.534,-26.7823,-368.454	1/2:248:0,130,118:0:0:130,118:4635,4165:-711.41,-335.509,-296.375,-376.074,0,-340.553	1/2:216:0,109,107:0:0:109,107:3836,3804:-617.634,-306.741,-273.929,-311.184,0,-278.974	1/2:161:0,77,84:0:0:77,84:2751,2962:-463.45,-239.724,-216.544,-224.08,0,-198.793	1/2:175:1,92,82:1:36:92,82:3239,2834:-484.711,-222.439,-197.682,-259.619,0,-237.872	1/1:180:0,179,0:0:0:179,0:6364,0:-568.148,-53.8844,0,-568.148,-53.8844,-568.148	1/2:162:0,90,72:0:0:90,72:3216,2526:-464.787,-203.609,-176.516,-261.529,0,-239.855	1/2:190:0,88,102:0:0:88,102:3126,3584:-543.075,-289.581,-263.09,-253.845,0,-223.14	1/1:123:0,123,0:0:0:123,0:4395,0:-395.084,-37.0267,0,-395.084,-37.0267,-395.084	1/2:138:0,65,73:0:0:65,73:2315,2553:-392.974,-205.358,-185.791,-187.849,0,-165.874	1/2:99:0,42,57:0:0:42,57:1495,2000:-282.05,-161.019,-148.376,-121.382,0,-104.223	1/1:94:0,94,0:0:0:94,0:3361,0:-301.23,-28.2968,0,-301.23,-28.2968,-301.23	1/2:79:0,49,30:0:0:49,30:1743,1056:-225.98,-84.9235,-70.173,-141.406,0,-132.375	1/2:229:0,118,111:0:0:118,111:4208,3917:-656.206,-314.314,-278.793,-342.243,0,-308.828	1/2:295:0,154,141:0:0:154,141:5483,4969:-847.153,-400.992,-354.633,-446.454,0,-404.009	1/1:140:1,139,0:1:36:139,0:4945,0:-441.101,-38.5459,0,-441.402,-41.8432,-444.34	1/2:141:0,62,79:0:0:62,79:2224,2816:-408.86,-227.724,-209.06,-181.492,0,-157.711	1/2:113:0,97,16:0:0:97,16:3454,574:-328.071,-46.7945,-17.5946,-281.632,0,-276.816	1/2:114:0,62,52:0:0:62,52:2193,1828:-326.097,-147.952,-129.288,-178.496,0,-162.843	1/1:371:0,370,1:0:0:370,1:13207,36:-1187.09,-111.381,0,-1184.22,-108.161,-1183.92	1/2:360:0,158,202:0:0:158,202:5631,7090:-1028.8,-571.781,-524.218,-457.313,0,-396.505	1/2:63:0,29,34:0:0:29,34:1019,1196:-179.349,-96.5822,-87.8523,-83.1157,0,-72.8807	1/2:438:0,206,232:0:0:206,232:7351,8138:-1254.72,-656.133,-594.121,-598.939,0,-529.101	1/2:122:0,51,70:0:0:51,70:1811,2446:-343.811,-196.596,-181.243,-147.208,0,-126.136	1/2:172:0,92,80:0:0:92,80:3285,2783:-492.768,-225.216,-197.522,-267.903,0,-243.821	1/1:11:0,11,0:0:0:11,0:396,0:-35.8041,-3.31133,0,-35.8041,-3.31133,-35.8041	1/1:15:0,15,0:0:0:15,0:536,0:-48.4302,-4.51545,0,-48.4302,-4.51545,-48.4302	1/1:3:0,3,0:0:0:3,0:108,0:-10.0288,-0.90309,0,-10.0288,-0.90309,-10.0288	1/2:12:0,5,7:0:0:5,7:180,249:-35.1557,-20.5338,-19.0286,-14.9784,0,-12.8711	1/1:13:0,13,0:0:0:13,0:464,0:-41.8854,-3.91339,0,-41.8854,-3.91339,-41.8854	1/2:324:0,154,168:0:0:154,168:5450,5939:-920.67,-477.715,-431.357,-443.055,0,-392.482	1/1:104:0,104,0:0:0:104,0:3719,0:-334.409,-31.3071,0,-334.409,-31.3071,-334.409	1/2:79:0,40,39:0:0:40,39:1426,1378:-226.522,-111.43,-99.3888,-115.443,0,-103.703	1/2:3:0,1,2:0:0:1,2:36,72:-9.04185,-6.11657,-5.81554,-3.28202,0,-2.67996	1/2:169:0,98,71:0:0:98,71:3488,2511:-486.132,-202.406,-172.905,-284.078,0,-262.705	1/1:65:0,65,0:0:0:65,0:2296,0:-206.383,-19.567,0,-206.383,-19.567,-206.383	1/2:255:0,115,140:0:0:115,140:4114,4936:-734.236,-399.62,-365.002,-334.97,0,-292.826	1/2:130:0,59,71:0:0:59,71:2092,2503:-371.047,-201.265,-183.504,-170.134,0,-148.76	1/1:135:0,135,0:0:0:135,0:4731,0:-425.089,-40.6391,0,-425.089,-40.6391,-425.089	1/1:140:0,139,1:0:0:139,1:4959,30:-445.874,-41.8432,0,-443.476,-39.1446,-443.175	1/2:142:0,87,55:0:0:87,55:3107,1956:-411.527,-159.265,-133.075,-252.617,0,-236.06	1/1:294:0,288,5:0:0:288,5:10255,174:-920.841,-86.6966,0,-906.767,-72.5502,-905.261	1/1:158:0,157,1:0:0:157,1:5608,36:-502.871,-47.2617,0,-499.936,-43.9671,-499.635	1/2:204:0,97,107:0:0:97,107:3460,3765:-584.524,-302.916,-273.716,-281.901,0,-249.691	1/1:141:0,141,0:0:0:141,0:5055,0:-454.761,-42.4452,0,-454.761,-42.4452,-454.761	1/2:16:0,5,11:0:0:5,11:180,392:-46.619,-31.9402,-30.435,-15.0362,0,-11.7249	1/1:140:0,140,0:0:0:140,0:5009,0:-448.532,-42.1442,0,-448.532,-42.1442,-448.532	1/2:92:0,56,36:0:0:56,36:1972,1250:-260.664,-100.539,-83.6814,-160.471,0,-149.634	2/2:8:0,0,8:0:0:0,8:0,287:-26.1765,-26.1765,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chr06	19071133	.	C	T	92424	PASS	AB=0.506904;ABP=6.30867;AC=49;AF=0.260638;AN=188;AO=4074;CIGAR=1X;DP=14964;DPB=14964;DPRA=1.37536;EPP=8814.88;EPPR=23609.1;GTI=2;LEN=1;MEANALT=1.07937;MQM=59.9809;MQMR=59.9895;NS=94;NUMALT=1;ODDS=0.801806;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144945;QR=387675;RO=10883;RPL=1720;RPP=217.256;RPPR=637.33;RPR=2354;RUN=1;SAF=1716;SAP=222.697;SAR=2358;SRF=4547;SRP=641.607;SRR=6336;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:34,49:34:1209:49:1728:-130.819,0,-84.1286	0/1:89:40,49:40:1427:49:1744:-130.452,0,-101.935	0/1:151:55,96:55:1963:96:3397:-260.491,0,-131.489	0/0:293:292,1:292:10411:1:36:0,-84.6035,-933.315	0/0:238:237,1:237:8465:1:36:0,-68.0469,-758.254	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:181:180,1:180:6398:1:36:0,-50.8882,-572.312	0/1:103:40,63:40:1427:63:2244:-171.218,0,-97.7207	0/1:105:43,62:43:1531:62:2187:-165.489,0,-106.474	0/1:204:106,98:106:3782:98:3475:-251.551,0,-279.164	0/1:139:82,57:82:2923:57:2044:-142.389,0,-221.462	0/0:127:127,0:127:4535:0:0:0,-38.2308,-408.318	0/1:102:48,54:48:1680:54:1914:-141.831,0,-120.779	0/1:123:71,52:71:2532:52:1837:-128.563,0,-191.105	0/0:142:142,0:142:5083:0:0:0,-42.7463,-457.613	0/1:127:58,69:58:2076:69:2484:-185.582,0,-148.88	0/1:33:13,20:13:468:20:716:-54.8337,0,-32.5257	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:45:23,22:23:824:22:777:-56.704,0,-60.937	0/1:276:150,126:150:5335:126:4474:-319.747,0,-397.2	0/1:356:162,194:162:5784:194:6901:-513.977,0,-413.51	0/0:153:153,0:153:5456:0:0:0,-46.0576,-491.168	0/1:212:108,103:108:3859:103:3659:-265.638,0,-283.628	0/0:132:126,5:126:4476:5:180:0,-23.2427,-386.46	0/1:138:67,71:67:2396:71:2516:-185.12,0,-174.355	0/0:435:435,0:435:15421:0:0:0,-130.948,-1387.61	0/1:531:287,243:287:10242:243:8668:-620.212,0,-761.675	0/1:82:42,40:42:1504:40:1415:-102.963,0,-110.97	0/1:433:222,211:222:7930:211:7503:-544.97,0,-583.379	0/1:270:137,133:137:4912:133:4748:-346.2,0,-360.952	0/1:218:102,116:102:3642:116:4101:-303.652,0,-262.36	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:17:16,1:16:568:1:36:0,-1.51923,-47.8536	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:9:0,9:0:0:9:319:-29.0514,-2.70927,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:529:248,281:248:8806:281:10001:-740.784,0,-633.288	0/0:216:215,1:215:7663:1:32:0,-61.8232,-686.51	0/1:39:19,20:19:676:20:710:-52.4857,0,-49.4278	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:176:93,83:93:3320:83:2949:-212.662,0,-246.038	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/1:247:118,129:118:4186:129:4609:-340.619,0,-302.57	0/1:203:87,116:87:3096:116:4094:-307.536,0,-217.757	0/0:183:183,0:183:6529:0:0:0,-55.0885,-587.694	0/0:175:175,0:175:6237:0:0:0,-52.6802,-561.424	0/1:126:66,60:66:2368:60:2148:-155.658,0,-175.448	0/0:305:304,1:304:10861:1:36:0,-88.2159,-973.794	0/0:188:187,1:187:6663:1:36:0,-52.9954,-596.15	0/1:204:110,93:110:3897:93:3329:-238.507,0,-289.603	0/0:195:195,0:195:6886:0:0:0,-58.7008,-619.815	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/0:104:102,2:102:3647:2:72:0,-24.4704,-321.597	0/1:90:60,30:60:2152:30:1068:-69.3394,0,-166.855	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:289:161,128:161:5709:128:4500:-318.174,0,-426.93	0/0:148:148,0:148:5277:0:0:0,-44.5524,-475.064	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:160:88,72:88:3139:72:2580:-184.284,0,-234.571	0/0:212:211,1:211:7518:1:36:0,-60.2201,-673.064	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/0:238:236,0:236:8391:0:0:0,-71.0431,-754.84	0/0:349:349,0:349:12430:0:0:0,-105.059,-1118.54	0/1:149:77,72:77:2747:72:2580:-187.596,0,-202.619	0/1:178:84,94:84:2997:94:3359:-248.943,0,-216.377	0/0:292:291,1:291:10325:1:36:0,-84.3025,-925.093	0/0:221:219,2:219:7815:2:72:0,-59.6909,-696.543	0/0:83:83,0:83:2960:0:0:0,-24.9855,-266.626	0/0:41:41,0:41:1450:0:0:0,-12.3422,-130.794	0/0:164:164,0:164:5840:0:0:0,-49.3689,-525.642	0/1:30:8,22:8:284:22:788:-62.2139,0,-16.8725	0/0:118:118,0:118:4187:0:0:0,-35.5215,-377.012	0/1:84:40,43:40:1428:43:1536:-113.334,0,-103.618	0/1:348:175,173:175:6236:173:6181:-451.629,0,-456.578	0/0:236:231,5:231:8223:5:176:0,-54.8581,-723.9	0/0:102:102,0:102:3635:0:0:0,-30.7051,-327.353	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/1:10:3,7:3:108:7:241:-19.0144,0,-7.06487	0/0:203:203,0:203:7232:0:0:0,-61.1091,-650.939	0/0:119:117,2:117:4170:2:72:0,-28.9858,-368.646	0/0:292:290,2:290:10328:2:72:0,-81.064,-922.61	0/1:239:129,110:129:4599:110:3923:-281.317,0,-342.13	0/0:136:136,0:136:4837:0:0:0,-40.9401,-435.486	0/1:207:101,106:101:3580:106:3756:-275.927,0,-260.095	0/1:370:180,190:180:6405:190:6747:-495.924,0,-465.158	0/1:37:15,22:15:527:22:788:-60.1067,0,-36.6221	0/0:110:110,0:110:3913:0:0:0,-33.1133,-352.364	0/0:86:86,0:86:3059:0:0:0,-25.8886,-275.54	0/1:69:29,40:29:1040:40:1432:-108.407,0,-73.1433	0/1:166:66,100:66:2364:100:3557:-270.369,0,-163.047	0/1:164:65,99:65:2332:99:3534:-268.9,0,-160.771	0/0:244:244,0:244:8682:0:0:0,-73.4513,-781.376	0/0:269:269,0:269:9569:0:0:0,-80.9771,-861.17
chr06	19277677	.	G	T	128577	PASS	AB=0.530798;ABP=40.0605;AC=136;AF=0.731183;AN=186;AO=6172;CIGAR=1X;DP=8288;DPB=8288;DPRA=0;EPP=13379.3;EPPR=4545.88;GTI=2;LEN=1;MEANALT=1;MQM=59.9705;MQMR=59.9905;NS=93;NUMALT=1;ODDS=0.708102;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220246;QR=75744;RO=2116;RPL=6172;RPP=13405.3;RPPR=4545.88;RPR=0;RUN=1;SAF=3;SAP=13379.3;SAR=6169;SRF=0;SRP=4597.85;SRR=2116;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:19,47:19:684:47:1692:-132.699,0,-42.0223	0/1:55:25,30:25:896:30:1060:-79.1527,0,-64.4037	0/1:111:43,68:43:1548:68:2436:-186.081,0,-106.199	1/1:200:0,200:0:0:200:7091:-638.248,-60.206,0	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	1/1:108:0,108:0:0:108:3857:-347.325,-32.5112,0	1/1:93:0,93:0:0:93:3301:-297.307,-27.9958,0	0/1:115:59,56:59:2120:56:1977:-143.584,0,-156.344	0/1:170:72,98:72:2580:98:3494:-263.493,0,-181.274	0/1:70:34,36:34:1224:36:1284:-94.7913,0,-89.3949	0/1:74:32,42:32:1143:42:1512:-114.098,0,-80.9025	1/1:91:0,91:0:0:91:3268:-294.34,-27.3937,0	0/1:100:52,48:52:1856:48:1716:-124.622,0,-137.217	0/1:73:36,37:36:1287:37:1318:-96.9346,0,-94.1576	1/1:81:0,81:0:0:81:2901:-261.324,-24.3834,0	0/1:75:32,43:32:1140:43:1544:-116.676,0,-80.332	0/1:43:23,20:23:820:20:716:-51.8234,0,-61.1782	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:40:20,20:20:720:20:720:-53.0876,0,-53.0876	0/1:149:76,73:76:2728:73:2605:-189.844,0,-200.909	0/1:209:106,103:106:3808:103:3673:-267.857,0,-280.001	1/1:70:0,70:0:0:70:2466:-222.191,-21.0721,0	0/1:102:48,54:48:1709:54:1932:-143.434,0,-123.389	0/1:93:9,84:9:320:84:2978:-240.256,0,-1.14657	0/1:73:31,42:31:1104:42:1512:-114.399,0,-77.6954	1/1:182:0,182:0:0:182:6481:-583.373,-54.7875,0	0/1:188:89,99:89:3181:99:3522:-260.594,0,-229.919	0/1:36:20,16:20:720:16:572:-40.9763,0,-54.2917	0/1:210:100,110:100:3580:110:3921:-289.866,0,-259.191	0/1:129:59,70:59:2112:70:2505:-186.869,0,-151.516	0/1:165:98,67:98:3515:67:2389:-165.567,0,-266.889	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:184:86,98:86:3076:98:3486:-258.561,0,-221.679	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	0/1:54:22,32:22:792:32:1148:-87.3742,0,-55.3501	.:.:.:.:.:.:.:.	0/1:137:71,66:71:2516:66:2338:-169.435,0,-185.449	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:210:105,105:105:3759:105:3738:-273.385,0,-275.293	0/1:73:49,24:49:1739:24:864:-56.1074,0,-134.819	1/1:72:0,72:0:0:72:2573:-231.818,-21.6742,0	1/1:96:0,96:0:0:96:3364:-302.973,-28.8989,0	0/1:118:56,62:56:2000:62:2194:-162.201,0,-144.752	1/1:146:2,144:2:72:144:5119:-454.015,-37.1137,0	1/1:77:0,77:0:0:77:2745:-247.291,-23.1793,0	0/1:78:37,41:37:1328:41:1476:-109.656,0,-96.3419	1/1:90:0,90:0:0:90:3156:-284.262,-27.0927,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:76:31,45:31:1116:45:1605:-121.86,0,-77.8734	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:129:55,74:55:1968:74:2581:-193.689,0,-138.562	1/1:41:0,41:0:0:41:1457:-131.424,-12.3422,0	0/1:4:3,1:3:99:1:36:-2.39415,0,-8.03246	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:76:27,49:27:964:49:1748:-134.726,0,-64.1985	1/1:103:0,103:0:0:103:3700:-333.201,-31.0061,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:120:0,120:0:0:120:4304:-387.522,-36.1236,0	1/1:131:2,129:2:72:129:4599:-407.233,-32.5982,0	0/1:58:22,36:22:788:36:1288:-98.7638,0,-53.7851	0/1:78:28,50:28:1004:50:1774:-136.46,0,-67.1955	1/1:121:1,120:1:36:120:4296:-383.213,-32.8264,0	1/1:81:0,81:0:0:81:2881:-259.526,-24.3834,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:78:0,78:0:0:78:2769:-249.451,-23.4803,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	1/1:87:0,87:0:0:87:3105:-279.676,-26.1896,0	0/1:82:55,27:55:1963:27:966:-62.5727,0,-152.26	0/1:218:95,123:95:3408:123:4424:-332.687,0,-241.309	1/1:126:0,126:0:0:126:4494:-404.627,-37.9298,0	1/1:173:0,173:0:0:173:6179:-556.149,-52.0782,0	1/1:122:1,121:1:36:121:4340:-387.176,-33.1274,0	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	1/1:106:0,106:0:0:106:3763:-338.867,-31.9092,0	1/1:144:0,144:0:0:144:5164:-464.899,-43.3483,0	1/1:198:0,198:0:0:198:7105:-639.486,-59.6039,0	0/1:82:33,49:33:1184:49:1756:-133.64,0,-82.1839	1/1:102:0,102:0:0:102:3656:-329.244,-30.7051,0	0/1:58:31,27:31:1107:27:961:-68.7875,0,-82.4804	0/1:124:53,71:53:1904:71:2556:-192.962,0,-134.31	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0	1/1:66:0,66:0:0:66:2357:-212.387,-19.868,0	0/1:58:24,34:24:860:34:1220:-92.6471,0,-60.2621	0/1:106:53,53:53:1886:53:1908:-140.088,0,-138.108	0/1:70:52,18:52:1868:18:648:-37.5798,0,-147.327	1/1:121:0,121:0:0:121:4329:-389.784,-36.4246,0	1/1:125:0,125:0:0:125:4487:-403.998,-37.6288,0
chr06	19889924	.	CGT	CGC,AGC	190499	PASS	AB=0.56959,0.428027;ABP=179.51,191.806;AC=138,50;AF=0.734043,0.265957;AN=188;AO=7090,1811;CIGAR=2M1X,1X1M1X;DP=8923;DPB=8923.33;DPRA=0,0.888027;EPP=15390.1,3935.55;EPPR=0;GTI=4;LEN=1,3;MEANALT=1.88298,2.18033;MQM=59.9794,59.9216;MQMR=0;NS=94;NUMALT=2;ODDS=0.012182;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=252721,63553;QR=0;RO=0;RPL=1,0;RPP=15390.1,3935.55;RPPR=0;RPR=7089,1811;RUN=1,1;SAF=7090,1811;SAP=15398.7,3935.55;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:19:0,13,6:0:0:13,6:468,214:-55.9903,-17.8016,-13.8882,-38.5463,0,-36.7401	1/2:110:0,72,37:0:0:72,37:2588,1292:-316.303,-105.16,-83.4857,-211.213,0,-200.075	1/2:119:0,80,38:0:0:80,38:2842,1307:-337.712,-106.125,-82.0429,-231.575,0,-220.136	1/1:170:0,168,1:0:0:168,1:6003,36:-540.056,-50.573,0,-537.119,-47.5957,-536.818	1/1:97:0,96,0:0:0:96,0:3435,0:-309.003,-28.8989,0,-309.003,-28.8989,-309.003	1/1:94:0,94,0:0:0:94,0:3348,0:-301.537,-28.2968,0,-301.537,-28.2968,-301.537	1/1:150:0,149,1:0:0:149,1:5315,28:-478.205,-44.8535,0,-475.987,-42.3548,-475.686	1/2:117:0,66,51:0:0:66,51:2338,1770:-334.687,-144.226,-124.358,-190.811,0,-175.458	1/2:50:0,23,26:0:0:23,26:828,903:-140.983,-73.416,-66.4923,-67.5797,0,-59.7529	1/2:70:0,36,34:0:0:36,34:1292,1198:-203.282,-97.8909,-87.0538,-105.747,0,-95.5117	1/2:114:0,60,54:0:0:60,54:2128,1891:-327.586,-154.211,-136.149,-173.727,0,-157.471	1/1:129:0,128,0:0:0:128,0:4576,0:-411.646,-38.5318,0,-411.646,-38.5318,-411.646	1/2:92:0,54,38:0:0:54,38:1924,1331:-265.478,-108.65,-92.394,-157.181,0,-145.742	1/2:74:0,40,34:0:0:40,34:1427,1191:-213.591,-97.2583,-85.2171,-116.686,0,-106.451	1/1:83:0,83,0:0:0:83,0:2976,0:-268.054,-24.9855,0,-268.054,-24.9855,-268.054	1/2:78:0,37,41:0:0:37,41:1320,1447:-225.79,-118.181,-107.043,-107.964,0,-95.6216	1/2:89:0,41,48:0:0:41,48:1459,1690:-256.845,-137.936,-125.594,-119.263,0,-104.814	1/1:72:0,72,0:0:0:72,0:2575,0:-231.999,-21.6742,0,-231.999,-21.6742,-231.999	1/2:74:0,27,46:0:0:27,46:964,1630:-211.369,-132.776,-124.648,-78.5893,0,-64.7419	1/2:117:0,84,33:0:0:84,33:2996,1167:-339.633,-95.4027,-70.1162,-244.585,0,-234.651	1/2:138:0,88,50:0:0:88,50:3135,1737:-397.095,-141.559,-115.069,-255.886,0,-240.834	1/1:44:0,44,0:0:0:44,0:1580,0:-142.492,-13.2453,0,-142.492,-13.2453,-142.492	1/2:53:0,29,23:0:0:29,23:1036,814:-150.786,-66.3169,-57.587,-84.4836,0,-77.5599	1/1:63:0,61,2:0:0:61,2:2167,69:-194.937,-18.3628,0,-189.332,-12.4124,-188.73	1/2:47:0,29,18:0:0:29,18:1036,620:-135.177,-50.7021,-41.9723,-84.824,0,-79.4055	1/1:299:0,297,0:0:0:297,0:10569,0:-950.768,-89.4059,0,-950.768,-89.4059,-950.768	1/2:154:0,88,66:0:0:88,66:3147,2278:-442.024,-185.41,-158.92,-256.964,0,-237.096	1/2:53:0,26,27:0:0:26,27:924,957:-153.614,-78.3178,-70.491,-75.6509,0,-67.5231	1/2:157:0,114,43:0:0:114,43:4052,1496:-452.188,-121.987,-87.6696,-330.551,0,-317.607	1/2:80:0,48,32:0:0:48,32:1687,1117:-228.519,-91.2027,-76.7533,-137.666,0,-128.033	1/2:70:0,50,20:0:0:50,20:1780,701:-202.2,-57.3914,-42.3399,-145.161,0,-139.14	1/1:15:0,15,0:0:0:15,0:532,0:-48.2131,-4.51545,0,-48.2131,-4.51545,-48.2131	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/2:5:0,4,1:0:0:4,1:140,36:-14.6799,-3.29724,-2.09312,-11.7405,0,-11.4394	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:319:0,162,155:0:0:162,155:5770,5501:-918.571,-448.275,-399.508,-470.365,0,-423.705	1/1:109:0,109,0:0:0:109,0:3888,0:-350.116,-32.8123,0,-350.116,-32.8123,-350.116	1/2:90:0,42,48:0:0:42,48:1495,1696:-260.319,-138.473,-125.83,-122.201,0,-107.751	1/2:11:0,6,5:0:0:6,5:208,180:-31.946,-15.0469,-13.2407,-17.2529,0,-15.7478	1/2:116:0,78,38:0:0:78,38:2764,1324:-333.189,-108.018,-84.5381,-225.52,0,-214.081	1/1:45:0,45,0:0:0:45,0:1592,0:-143.551,-13.5464,0,-143.551,-13.5464,-143.551	1/2:105:0,69,36:0:0:69,36:2469,1263:-304.473,-103.135,-82.3637,-201.691,0,-190.854	1/2:107:0,58,49:0:0:58,49:2063,1718:-308.278,-140.15,-122.69,-168.481,0,-153.73	1/1:95:0,95,0:0:0:95,0:3391,0:-305.405,-28.5979,0,-305.405,-28.5979,-305.405	1/1:76:0,76,0:0:0:76,0:2685,0:-241.895,-22.8783,0,-241.895,-22.8783,-241.895	1/2:72:0,40,32:0:0:40,32:1436,1118:-208.436,-91.2927,-79.2515,-117.496,0,-107.864	1/1:118:0,117,1:0:0:117,1:4142,36:-372.605,-35.2205,0,-369.668,-31.9233,-369.367	1/1:128:0,128,0:0:0:128,0:4558,0:-410.196,-38.5318,0,-410.196,-38.5318,-410.196	1/2:105:0,74,31:0:0:74,31:2644,1107:-306.183,-90.6094,-68.3331,-215.931,0,-206.599	1/1:121:0,120,1:0:0:120,1:4277,36:-384.749,-36.1236,0,-381.812,-32.8264,-381.511	1/2:3:0,2,1:0:0:2,1:72,27:-8.33349,-2.39875,-1.79669,-6.23466,0,-5.93363	1/1:144:0,144,0:0:0:144,0:5144,0:-463.103,-43.3483,0,-463.103,-43.3483,-463.103	1/2:30:0,23,7:0:0:23,7:824,241:-87.0422,-19.8289,-12.9052,-67.5596,0,-65.4524	1/2:13:0,6,7:0:0:6,7:212,239:-37.0065,-19.7356,-17.9294,-17.6186,0,-15.5114	1/2:102:0,82,20:0:0:82,20:2897,694:-292.694,-56.7607,-32.0762,-236.281,0,-230.261	1/1:37:0,36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chr06	20010214	.	T	C	23878.6	PASS	AB=0.507319;ABP=4.31349;AC=47;AF=0.252688;AN=186;AO=1433;CIGAR=1X;DP=5958;DPB=5958;DPRA=0.896664;EPP=3106.05;EPPR=9794.21;GTI=1;LEN=1;MEANALT=1;MQM=58.2121;MQMR=59.9501;NS=93;NUMALT=1;ODDS=1.15969;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51168;QR=161950;RO=4525;RPL=1;RPP=3106.05;RPPR=9794.21;RPR=1432;RUN=1;SAF=0;SAP=3114.73;SAR=1433;SRF=0;SRP=9828.92;SRR=4525;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:14,10:14:504:10:360:-25.5101,0,-38.4734	0/1:80:37,43:37:1328:43:1533:-114.085,0,-95.7398	0/1:93:55,38:55:1961:38:1364:-95.027,0,-148.768	0/0:181:181,0:181:6439:0:0:0,-54.4864,-579.596	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5035	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.04	0/1:73:31,42:31:1104:42:1497:-113.012,0,-77.6954	0/1:75:27,48:27:960:48:1724:-132.578,0,-64.139	0/1:83:48,35:48:1716:35:1237:-86.5973,0,-129.74	0/1:27:13,14:13:468:14:504:-37.5347,0,-34.3318	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/1:41:25,16:25:900:16:576:-39.8107,0,-68.9788	0/1:17:8,9:8:288:9:324:-24.385,0,-21.1499	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:33:19,14:19:684:14:500:-35.3928,0,-51.9563	0/1:17:6,11:6:216:11:396:-30.8605,0,-14.673	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.0275	0/1:22:11,11:11:396:11:396:-29.3554,0,-29.3601	0/1:97:40,57:40:1432:57:2025:-152.93,0,-99.9753	0/1:113:44,69:44:1569:69:2440:-185.575,0,-107.483	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:56:26,30:26:936:30:1076:-80.2377,0,-67.7018	0/0:65:62,3:62:2224:3:108:0,-9.4942,-190.351	0/1:30:13,17:13:468:17:612:-46.3756,0,-33.4287	0/0:190:190,0:190:6779:0:0:0,-57.1957,-610.151	0/1:188:92,96:92:3296:96:3444:-253.501,0,-240.178	0/1:18:11,7:11:392:7:252:-17.6057,0,-30.2015	0/1:161:100,61:100:3588:61:2192:-149.028,0,-274.66	0/1:94:54,40:54:1925:40:1418:-99.1133,0,-145.142	0/1:90:20,70:20:705:70:2477:-196.008,0,-36.6801	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:143:82,61:82:2921:61:2171:-152.552,0,-220.077	0/0:104:104,0:104:3716:0:0:0,-31.3071,-334.64	0/1:26:12,14:12:432:14:504:-37.8334,0,-31.3944	.:.:.:.:.:.:.:.	0/1:112:65,47:65:2336:47:1688:-118.46,0,-176.784	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:49:19,30:19:676:30:1061:-80.7965,0,-46.4175	0/1:31:16,15:16:572:15:540:-39.5905,0,-42.4815	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/1:70:38,32:38:1364:32:1148:-82.5413,0,-101.989	0/0:104:104,0:104:3716:0:0:0,-31.3071,-334.64	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.227	0/1:89:45,44:45:1616:44:1584:-115.962,0,-118.938	0/0:133:133,0:133:4753:0:0:0,-40.037,-427.922	0/1:3:2,1:2:72:1:36:-2.69259,0,-5.93363	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.4	0/1:34:21,13:21:752:13:464:-31.8461,0,-57.7712	0/1:12:3,9:3:108:9:320:-25.5229,0,-6.46281	0/1:107:51,56:51:1820:56:1995:-147.563,0,-131.871	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:8:5,3:5:180:3:108:-7.66209,0,-14.1438	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:52:25,27:25:900:27:964:-71.3656,0,-65.6675	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.93	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:208:208,0:208:7449:0:0:0,-62.6142,-670.45	0/0:112:110,2:110:3940:2:72:0,-26.8836,-347.955	0/1:53:25,28:25:896:28:1006:-74.8694,0,-65.0058	0/1:69:36,33:36:1292:33:1184:-86.0375,0,-95.8127	0/0:97:95,2:95:3400:2:72:0,-22.3657,-299.378	0/0:124:122,2:122:4361:2:72:0,-30.491,-385.826	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.221	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.536	0/1:44:21,23:21:756:23:828:-61.566,0,-55.1219	0/0:115:115,0:115:4093:0:0:0,-34.6184,-368.556	0/1:90:42,48:42:1512:48:1713:-127.312,0,-109.282	0/1:99:40,59:40:1432:59:2097:-159.132,0,-99.3756	0/0:175:175,0:175:6242:0:0:0,-52.6802,-561.874	0/0:38:37,1:37:1328:1:36:0,-7.84086,-116.222	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:13:12,1:12:428:1:36:0,-0.31771,-35.2631	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.016	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:152:152,0:152:5421:0:0:0,-45.7566,-488.02	0/1:42:23,19:23:828:19:680:-48.8718,0,-62.2009	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:15:8,7:8:288:7:252:-18.5064,0,-21.752	0/1:74:31,43:31:1116:43:1540:-116.55,0,-78.4755	0/1:25:15,10:15:536:10:360:-25.2162,0,-41.0491	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:14:9,5:9:324:5:180:-12.3329,0,-25.2914	0/1:56:29,27:29:1036:27:960:-69.8351,0,-76.6962	0/1:45:17,28:17:608:28:970:-74.0038,0,-41.5033	0/0:124:124,0:124:4445:0:0:0,-37.3277,-400.218	0/0:50:49,1:49:1760:1:36:0,-11.4558,-155.086
chr06	20011408	.	A	T	120103	PASS	AB=0.4864;ABP=9.03483;AC=140;AF=0.744681;AN=188;AO=5698;CIGAR=1X;DP=7639;DPB=7639;DPRA=0;EPP=12376.1;EPPR=4215.67;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.5295;MQMR=59.8742;NS=94;NUMALT=1;ODDS=2.18646;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204217;QR=69528;RO=1940;RPL=0;RPP=12376.1;RPPR=4215.67;RPR=5698;RUN=1;SAF=5698;SAP=12376.1;SAR=0;SRF=1940;SRP=4215.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:7,13:7:252:13:460:-35.5235,0,-17.0084	0/1:110:62,48:62:2213:48:1724:-122.307,0,-166.19	0/1:32:16,16:16:568:16:572:-42.1772,0,-41.8189	1/1:141:0,141:0:0:141:5072:-456.498,-42.4452,0	1/1:52:1,51:1:36:51:1824:-160.712,-12.0553,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:75:0,75:0:0:75:2688:-242.137,-22.5773,0	0/1:91:45,46:45:1616:46:1656:-121.927,0,-118.336	0/1:80:32,48:32:1152:48:1712:-130.256,0,-79.8133	0/1:57:28,29:28:1004:29:1044:-77.1161,0,-73.5172	0/1:59:25,34:25:900:34:1216:-91.9622,0,-63.5602	1/1:81:0,81:0:0:81:2893:-260.268,-24.3834,0	0/1:79:46,33:46:1652:33:1180:-82.7103,0,-124.409	0/1:84:49,35:49:1764:35:1252:-87.6893,0,-133.757	1/1:61:1,60:1:36:60:2160:-190.989,-14.7646,0	0/1:60:28,32:28:1008:32:1137:-84.5658,0,-72.9746	0/1:99:43,56:43:1548:56:2012:-151.516,0,-109.811	1/1:56:0,56:0:0:56:2016:-181.697,-16.8577,0	0/1:33:17,16:17:593:16:572:-41.8761,0,-43.7607	0/1:131:75,56:75:2692:56:2008:-141.292,0,-203.089	0/1:119:47,72:47:1692:72:2580:-196.627,0,-116.744	1/1:114:0,114:0:0:114:4084:-367.702,-34.3174,0	0/1:64:38,26:38:1356:26:936:-65.2912,0,-103.075	1/1:66:3,63:3:108:63:2264:-193.813,-9.79281,0	0/1:28:14,14:14:500:14:500:-36.8945,0,-36.9073	1/1:262:1,261:1:36:261:9355:-838.102,-75.2716,0	0/1:139:58,81:58:2088:81:2896:-218.796,0,-146.345	0/1:43:23,20:23:828:20:716:-51.8142,0,-61.8998	0/1:162:83,79:83:2968:79:2840:-207.058,0,-218.586	0/1:120:54,66:54:1910:66:2341:-174.807,0,-136.045	0/1:138:52,86:52:1864:86:3076:-234.88,0,-125.221	1/1:14:0,14:0:0:14:504:-45.5396,-4.21442,0	1/1:8:0,8:0:0:8:288:-26.2628,-2.40824,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:136:-12.5087,-1.20412,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:269:149,120:149:5348:120:4296:-305.829,0,-400.473	1/1:232:0,232:0:0:232:8325:-748.669,-69.839,0	0/1:56:32,24:32:1129:24:864:-61.2085,0,-85.0587	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:89:48,41:48:1709:41:1468:-105.607,0,-127.301	1/1:29:0,29:0:0:29:1044:-94.2702,-8.72987,0	0/1:58:27,31:27:949:31:1116:-83.292,0,-68.262	0/1:75:39,36:39:1396:36:1296:-94.3621,0,-103.362	1/1:60:0,60:0:0:60:2140:-192.856,-18.0618,0	1/1:110:0,110:0:0:110:3948:-355.501,-33.1133,0	0/1:123:51,72:51:1820:72:2580:-195.409,0,-126.914	1/1:138:1,137:1:36:137:4881:-435.784,-37.9439,0	1/1:98:0,98:0:0:98:3512:-316.254,-29.5009,0	0/1:105:68,37:68:2440:37:1332:-88.5231,0,-188.201	1/1:115:0,115:0:0:115:4109:-369.805,-34.6185,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	1/1:84:0,84:0:0:84:3016:-271.648,-25.2865,0	0/1:39:23,16:23:828:16:576:-40.4325,0,-63.1039	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:85:49,36:49:1764:36:1288:-89.7272,0,-133.265	1/1:36:0,36:0:0:36:1292:-116.579,-10.8371,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:25:0,25:0:0:25:900:-81.3197,-7.52575,0	0/1:54:31,23:31:1112:23:828:-58.5389,0,-84.1357	1/1:125:0,125:0:0:125:4465:-401.997,-37.6288,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:132:0,132:0:0:132:4744:-427.109,-39.736,0	1/1:116:0,116:0:0:116:4168:-375.117,-34.9195,0	0/1:44:20,24:20:716:24:860:-64.4637,0,-51.5224	0/1:63:29,33:29:1040:33:1184:-87.7666,0,-74.8907	1/1:160:3,157:3:108:157:5640:-497.544,-38.0896,0	1/1:83:1,82:1:36:82:2936:-260.515,-21.3872,0	1/1:33:0,33:0:0:33:1177:-106.232,-9.93399,0	1/1:97:3,94:3:108:94:3356:-292.067,-19.1247,0	1/1:147:0,147:0:0:147:5284:-474.905,-44.2514,0	0/1:18:12,6:12:432:6:212:-14.0063,0,-33.8027	1/1:117:0,117:0:0:117:4196:-377.635,-35.2205,0	0/1:58:35,23:35:1260:23:828:-57.0359,0,-96.2457	0/1:173:75,98:75:2700:98:3516:-264.508,0,-191.165	1/1:85:0,85:0:0:85:3052:-274.893,-25.5876,0	1/1:98:1,97:1:36:97:3476:-309.437,-25.9027,0	1/1:99:0,99:0:0:99:3541:-318.14,-29.802,0	0/1:16:11,5:11:396:5:180:-11.7066,0,-31.1663	1/1:57:0,57:0:0:57:2052:-184.942,-17.1587,0	1/1:95:0,95:0:0:95:3385:-304.663,-28.5979,0	1/1:125:0,125:0:0:125:4480:-403.146,-37.6288,0	0/1:133:59,74:59:2124:74:2656:-199.196,0,-151.391	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:91:50,41:50:1788:41:1468:-105.018,0,-133.803	0/1:167:99,68:99:3560:68:2421:-167.861,0,-270.335	0/1:40:26,14:26:932:14:504:-33.6405,0,-72.1495	1/1:98:0,98:0:0:98:3524:-317.054,-29.5009,0	1/1:55:0,55:0:0:55:1967:-177.249,-16.5567,0	0/1:29:18,11:18:648:11:396:-27.2482,0,-49.922	0/1:120:58,62:58:2084:62:2208:-162.836,0,-151.702	0/1:68:56,12:56:1997:12:428:-18.1974,0,-159.532	1/1:106:0,106:0:0:106:3804:-342.425,-31.9092,0	1/1:81:0,81:0:0:81:2912:-262.303,-24.3834,0
chr06	20011551	.	T	A	91254.1	PASS	AB=0.527479;ABP=24.9689;AC=133;AF=0.722826;AN=184;AO=4724;CIGAR=1X;DP=6320;DPB=6320;DPRA=13.8791;EPP=10252.4;EPPR=3457.82;GTI=2;LEN=1;MEANALT=1.04396;MQM=40.5533;MQMR=53.2112;NS=92;NUMALT=1;ODDS=2.42202;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167072;QR=56998;RO=1591;RPL=0;RPP=10261;RPPR=3431.81;RPR=4724;RUN=1;SAF=1;SAP=10252.4;SAR=4723;SRF=3;SRP=3431.81;SRR=1588;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:40,31:40:1436:31:1108:-76.6001,0,-106.947	0/1:53:23,30:23:828:30:1072:-78.2387,0,-58.8355	0/1:162:74,87:74:2648:87:3062:-217.173,0,-189.137	1/1:109:0,109:0:0:109:3881:-332.819,-32.8123,0	1/1:33:1,32:1:36:32:1144:-96.874,-6.33831,0	1/1:31:0,31:0:0:31:1108:-97.7844,-9.33193,0	1/1:73:0,73:0:0:73:2589:-222.248,-21.9752,0	0/1:83:48,35:48:1716:35:1244:-83.8829,0,-128.269	0/1:95:53,42:53:1887:42:1469:-99.4417,0,-141.118	0/1:41:19,22:19:684:22:790:-55.1497,0,-49.2662	0/1:40:19,21:19:680:21:749:-52.3125,0,-49.1253	1/1:72:0,72:0:0:72:2524:-220.789,-21.6742,0	0/1:75:28,47:28:1004:47:1668:-124.83,0,-67.9241	0/1:48:22,26:22:788:26:920:-66.6711,0,-56.6411	1/1:69:0,69:0:0:69:2438:-209.305,-20.7711,0	0/1:68:34,34:34:1220:34:1207:-85.616,0,-88.2412	0/1:20:9,10:9:320:10:343:-23.904,0,-23.049	1/1:23:0,23:0:0:23:820:-72.5362,-6.92369,0	0/1:22:5,17:5:180:17:591:-45.8571,0,-9.81168	0/1:65:29,36:29:1040:36:1296:-91.9039,0,-73.5367	0/1:73:41,32:41:1476:32:1122:-77.2599,0,-110.975	1/1:78:0,78:0:0:78:2752:-234.233,-23.4803,0	0/1:84:48,36:48:1685:36:1292:-85.8833,0,-125.189	0/1:78:8,70:8:284:70:2472:-193.355,0,-1.42573	0/1:86:37,49:37:1332:49:1725:-125.965,0,-93.7067	1/1:161:0,161:0:0:161:5650:-482.172,-48.4658,0	0/1:184:82,100:82:2940:100:3547:-256.633,0,-209.356	0/1:23:14,9:14:504:9:316:-21.3032,0,-38.6037	0/1:212:88,124:88:3139:124:4410:-313.498,0,-216.78	0/1:99:42,57:42:1512:57:2017:-147.74,0,-106.477	0/1:65:32,33:32:1137:33:1175:-81.3659,0,-82.1727	1/1:9:0,9:0:0:9:290:-25.891,-2.70927,0	1/1:9:0,9:0:0:9:320:-28.5496,-2.70927,0	.:.:.:.:.:.:.:.	0/1:12:4,8:4:144:8:287:-20.9426,0,-9.69165	1/1:9:0,9:0:0:9:324:-28.8723,-2.70927,0	0/1:179:84,95:84:3000:95:3300:-229.611,0,-214.661	1/1:120:0,120:0:0:120:4234:-371.87,-36.1236,0	0/1:43:28,15:28:999:15:523:-33.545,0,-77.1491	.:.:.:.:.:.:.:.	0/1:59:32,27:32:1148:27:972:-67.5931,0,-85.668	1/1:28:0,28:0:0:28:996:-88.0613,-8.42884,0	0/1:225:106,119:106:3808:119:4206:-301.721,0,-274.614	0/1:42:22,20:22:788:20:692:-46.6329,0,-58.2095	1/1:36:0,36:0:0:36:1251:-106.82,-10.8371,0	1/1:103:0,103:0:0:103:3648:-308.507,-31.0061,0	0/1:62:30,32:30:1072:32:1120:-80.4166,0,-77.6415	1/1:102:0,102:0:0:102:3610:-305.99,-30.7051,0	1/1:90:0,90:0:0:90:3188:-272.01,-27.0927,0	0/1:63:38,25:38:1364:25:879:-56.1739,0,-103.302	1/1:72:0,72:0:0:72:2567:-219.614,-21.6742,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.2265	1/1:98:0,98:0:0:98:3462:-305.366,-29.5009,0	0/1:28:9,19:9:320:19:665:-48.9789,0,-20.5969	0/1:20:4,16:4:144:16:568:-44.4436,0,-7.28341	0/1:67:33,33:33:1188:33:1152:-81.7139,0,-86.8272	1/1:40:3,37:3:108:37:1283:-100.62,-2.49553,0	0/1:4:2,2:2:72:2:68:-5.03941,0,-5.60367	1/1:17:0,17:0:0:17:608:-52.4494,-5.11751,0	0/1:81:27,54:27:972:54:1912:-144.324,0,-62.856	1/1:82:0,82:0:0:82:2861:-244.27,-24.6845,0	0/1:8:4,4:4:144:4:144:-10.2591,0,-10.8617	1/1:81:0,81:0:0:81:2879:-246.794,-24.3834,0	1/1:173:1,172:1:36:172:6126:-518.815,-48.5114,0	0/1:43:16,27:16:572:27:949:-70.4464,0,-38.8329	0/1:44:17,27:17:612:27:949:-68.2888,0,-41.9963	1/1:75:2,73:2:72:73:2590:-215.871,-15.7753,0	1/1:112:0,112:0:0:112:3950:-338.725,-33.7154,0	1/1:30:0,30:0:0:30:1064:-94.0795,-9.0309,0	1/1:47:0,47:0:0:47:1688:-148.971,-14.1484,0	1/1:35:0,35:0:0:35:1239:-106.906,-10.5361,0	0/1:21:7,14:7:252:14:504:-37.0878,0,-16.6319	1/1:155:0,155:0:0:155:5476:-478.91,-46.6597,0	0/1:91:47,44:47:1671:44:1555:-110.042,0,-123.069	0/1:111:67,44:67:2404:44:1580:-106.05,0,-182.178	1/1:87:0,87:0:0:87:3085:-264.542,-26.1896,0	1/1:88:0,88:0:0:88:3151:-276.855,-26.4906,0	1/1:54:0,54:0:0:54:1932:-170.478,-16.2556,0	0/1:5:3,2:3:108:2:72:-5.18477,0,-8.56275	1/1:62:0,62:0:0:62:2160:-190.724,-18.6639,0	1/1:48:0,48:0:0:48:1693:-149.416,-14.4494,0	1/1:144:1,143:1:36:143:5095:-432.872,-39.7618,0	0/1:72:28,44:28:1008:44:1571:-112.682,0,-68.821	1/1:69:0,69:0:0:69:2459:-211.126,-20.7711,0	0/1:32:17,15:17:612:15:540:-36.8759,0,-45.4671	0/1:104:52,52:52:1872:52:1826:-126.007,0,-136.912	0/1:26:13,13:13:468:13:456:-32.7566,0,-33.6758	1/1:52:0,52:0:0:52:1800:-159.099,-15.6536,0	1/1:58:0,58:0:0:58:2036:-178.757,-17.4597,0	0/1:21:10,11:10:360:11:364:-25.07,0,-26.3991	0/1:82:36,46:36:1296:46:1629:-118.808,0,-91.7605	0/1:56:46,10:46:1656:10:352:-13.7464,0,-131.373	1/1:59:1,58:1:36:58:2076:-174.757,-14.1743,0	1/1:74:0,74:0:0:74:2595:-222.109,-22.2762,0
chr06	20079288	.	G	A	38170.1	PASS	AB=0.504023;ABP=3.63932;AC=47;AF=0.252688;AN=186;AO=2264;CIGAR=1X;DP=9689;DPB=9689;DPRA=0.89792;EPP=4919.22;EPPR=16119.7;GTI=0;LEN=1;MEANALT=1;MQM=59.9766;MQMR=59.9714;NS=93;NUMALT=1;ODDS=8.34282;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81007;QR=264688;RO=7422;RPL=0;RPP=4919.22;RPPR=16119.7;RPR=2264;RUN=1;SAF=2264;SAP=4919.22;SAR=0;SRF=7422;SRP=16119.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:125:53,72:53:1869:72:2580:-194.82,0,-130.859	0/1:69:34,35:34:1205:35:1256:-92.5742,0,-87.9828	0/1:104:54,50:54:1917:50:1792:-130.255,0,-141.498	0/0:264:264,0:264:9404:0:0:0,-79.4719,-846.322	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:111:111,0:111:3954:0:0:0,-33.4143,-356.048	0/1:181:93,88:93:3325:88:3152:-229.419,0,-244.849	0/1:123:50,73:50:1773:73:2620:-199.021,0,-122.824	0/1:82:48,34:48:1709:34:1209:-84.4297,0,-129.409	0/1:30:11,19:11:396:19:680:-52.4983,0,-26.9518	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:76:36,40:36:1281:40:1440:-107.019,0,-92.713	0/1:47:24,23:24:856:23:828:-60.6957,0,-63.2127	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/1:53:21,32:21:752:32:1144:-87.3149,0,-52.0517	0/1:33:13,20:13:468:20:720:-55.1948,0,-32.5257	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:23:15,8:15:540:8:288:-19.3437,0,-42.0128	0/1:179:102,77:102:3611:77:2741:-193.047,0,-271.265	0/1:185:93,92:93:3267:92:3285:-240.169,0,-238.559	0/0:215:214,1:214:7612:1:36:0,-61.1232,-681.518	0/1:128:63,65:63:2268:65:2324:-170.888,0,-165.85	0/0:80:74,6:74:2644:6:216:0,-4.29189,-218.416	0/1:72:35,37:35:1241:37:1328:-98.1481,0,-90.3183	0/0:298:298,0:298:10651:0:0:0,-89.7069,-958.497	0/1:296:136,160:136:4876:160:5672:-421.493,0,-349.887	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7641	0/1:338:184,154:184:6589:154:5512:-394.458,0,-491.338	0/1:155:68,87:68:2432:87:3098:-232.385,0,-172.476	0/1:133:47,86:47:1673:86:3080:-237.381,0,-110.818	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:164:81,83:81:2916:83:2984:-219.422,0,-213.305	0/0:242:242,0:242:8612:0:0:0,-72.8493,-775.075	0/1:38:12,26:12:432:26:936:-73.1203,0,-27.7821	.:.:.:.:.:.:.:.	0/1:164:72,92:72:2588:92:3304:-248.209,0,-183.8	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:198:112,86:112:4012:86:3088:-218.543,0,-301.665	0/1:43:23,20:23:820:20:716:-51.8234,0,-61.1782	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/0:174:174,0:174:6187:0:0:0,-52.3792,-556.927	0/1:185:78,107:78:2774:107:3844:-290.464,0,-194.208	0/0:227:227,0:227:8086:0:0:0,-68.3338,-727.651	0/0:167:167,0:167:5967:0:0:0,-50.272,-537.132	0/1:86:46,40:46:1633:40:1436:-103.649,0,-121.368	0/0:185:185,0:185:6590:0:0:0,-55.6905,-593.181	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:157:157,0:157:5640:0:0:0,-47.2617,-507.718	0/1:72:41,31:41:1472:31:1108:-78.3568,0,-111.102	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:110:61,49:61:2184:49:1755:-125.12,0,-162.935	0/0:60:60,0:60:2122:0:0:0,-18.0618,-191.243	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:106:63,43:63:2234:43:1529:-105.992,0,-169.411	0/0:82:82,0:82:2903:0:0:0,-24.6845,-261.502	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:185:185,0:185:6595:0:0:0,-55.6905,-593.628	0/0:156:154,0:154:5513:0:0:0,-46.3586,-495.934	0/1:69:50,19:50:1785:19:684:-41.1193,0,-140.16	0/1:91:54,37:54:1928:37:1313:-91.0736,0,-146.403	0/0:202:202,0:202:7200:0:0:0,-60.8081,-646.949	0/0:180:178,2:178:6354:2:72:0,-47.3487,-565.009	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/1:31:18,13:18:648:13:461:-32.4941,0,-49.32	0/0:187:187,0:187:6666:0:0:0,-56.2926,-600.017	0/1:89:55,34:55:1972:34:1224:-83.6754,0,-150.963	0/1:142:58,84:58:2080:84:2985:-226.006,0,-144.724	0/0:204:204,0:204:7260:0:0:0,-61.4101,-653.451	0/0:166:166,0:166:5904:0:0:0,-49.971,-531.189	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.914	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:147:146,0:146:5213:0:0:0,-43.9504,-468.948	0/0:149:149,0:149:5311:0:0:0,-44.8535,-478.121	0/0:299:299,0:299:10653:0:0:0,-90.008,-958.678	0/1:47:23,24:23:798:24:860:-63.5734,0,-57.9857	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.392	0/1:53:22,31:22:758:31:1112:-84.4368,0,-52.5796	0/1:110:62,48:62:2201:48:1728:-122.692,0,-165.241	0/1:30:11,19:11:392:19:680:-52.4983,0,-26.5892	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.229	0/1:20:8,12:8:284:12:432:-33.2006,0,-19.8828	0/1:64:39,25:39:1385:25:883:-60.5204,0,-105.681	0/1:61:20,41:20:705:41:1472:-114.413,0,-45.41	0/0:139:139,0:139:4981:0:0:0,-41.8432,-448.436	0/0:91:91,0:91:3238:0:0:0,-27.3937,-291.639
chr06	20098759	.	C	T	29684.3	PASS	AB=0.683134;ABP=586.79;AC=52;AF=0.27957;AN=186;AO=1380;CIGAR=1X;DP=3425;DPB=3425;DPRA=1.40914;EPP=2990.96;EPPR=4439.33;GTI=8;LEN=1;MEANALT=1.01754;MQM=59.913;MQMR=59.9931;NS=93;NUMALT=1;ODDS=1.17004;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49039;QR=72391;RO=2043;RPL=1159;RPP=1387.47;RPPR=3165.76;RPR=221;RUN=1;SAF=1160;SAP=1393.38;SAR=220;SRF=1884;SRP=3165.76;SRR=159;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:11,15:11:392:15:540:-41.1098,0,-27.7933	0/1:34:9,25:9:302:25:896:-70.7253,0,-17.2701	0/1:75:10,65:10:330:65:2298:-184.501,0,-7.44009	0/0:62:62,0:62:2196:0:0:0,-18.6639,-197.903	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.272	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9198	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:44:15,29:15:540:29:1028:-79.5877,0,-35.6912	0/1:69:20,49:20:708:49:1747:-136.742,0,-43.2745	0/1:38:18,20:18:629:20:720:-53.6896,0,-45.4946	0/1:19:5,14:5:180:14:492:-38.8928,0,-10.8325	0/0:31:31,0:31:1075:0:0:0,-9.33193,-97.0546	0/1:29:17,12:17:589:12:432:-30.4913,0,-44.6034	0/1:29:11,18:11:387:18:639:-49.1084,0,-26.4361	0/0:25:25,0:25:879:0:0:0,-7.52575,-79.4268	0/1:30:10,20:10:347:20:712:-55.3758,0,-22.5327	0/1:21:2,18:2:72:18:635:-51.0969,0,-0.456295	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:77:18,59:18:648:59:2090:-165.185,0,-35.4726	0/1:95:23,72:23:807:72:2578:-203.67,0,-44.3513	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:63:17,46:17:608:46:1619:-127.032,0,-36.0871	0/1:13:9,4:9:316:4:140:-9.03119,0,-24.8655	0/1:36:5,31:5:180:31:1112:-89.4845,0,-5.71498	0/0:79:79,0:79:2812:0:0:0,-23.7814,-253.318	0/1:94:24,70:24:847:70:2492:-196.231,0,-48.2519	0/1:16:5,11:5:165:11:396:-31.1663,0,-10.3571	0/1:107:34,73:34:1216:73:2604:-202.398,0,-77.5364	0/1:53:18,35:18:648:35:1256:-97.3907,0,-42.6973	0/1:39:13,26:13:464:26:919:-71.2836,0,-30.3573	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:86:33,53:33:1162:53:1875:-143.132,0,-78.9967	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:34:13,21:13:464:21:746:-57.2295,0,-31.8625	.:.:.:.:.:.:.:.	0/1:39:12,27:12:413:27:968:-75.6972,0,-25.7577	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:118:20,98:20:712:98:3493:-279.056,0,-28.8851	0/1:26:11,15:11:396:15:527:-39.9334,0,-28.156	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/1:49:21,28:21:748:28:1004:-75.9254,0,-52.8948	0/0:78:77,1:77:2734:1:36:0,-19.8821,-242.704	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/1:45:15,30:15:531:30:1063:-82.4345,0,-34.5756	0/0:17:16,0:16:568:0:0:0,-4.81648,-51.0923	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/1:44:10,34:10:351:34:1199:-94.9663,0,-18.6814	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:57:24,33:24:847:33:1157:-87.2042,0,-59.39	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:51:19,32:19:671:32:1131:-86.7434,0,-45.3633	0/0:51:51,0:51:1778:0:0:0,-15.3525,-160.299	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:150:149,1:149:5272:1:36:0,-41.5562,-471.015	0/0:45:44,1:44:1565:1:36:0,-9.94807,-137.541	0/1:43:13,30:13:468:30:1053:-82.1343,0,-29.5154	0/1:30:16,14:16:567:14:500:-36.3029,0,-42.3298	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.465	0/0:38:37,1:37:1307:1:36:0,-7.84086,-114.332	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:27:27,0:27:950:0:0:0,-8.12781,-85.8134	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/1:54:24,30:24:851:30:1067:-80.0856,0,-60.6538	0/1:49:9,40:9:315:40:1400:-111.54,0,-13.9368	0/0:60:60,0:60:2151:0:0:0,-18.0618,-193.857	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/1:15:4,11:4:144:11:387:-30.6505,0,-8.79817	0/0:23:22,1:22:783:1:36:0,-3.32541,-67.1947	0/0:25:25,0:25:873:0:0:0,-7.52575,-78.8845	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.271	0/1:22:12,10:12:424:10:360:-26.1216,0,-31.8738	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/1:25:9,16:9:316:16:563:-43.4734,0,-21.2531	0/1:52:21,31:21:743:31:1104:-84.0171,0,-51.5398	0/1:8:5,3:5:171:3:108:-7.66693,0,-13.3172	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:22:21,1:21:748:1:36:0,-3.02438,-64.047	0/1:15:4,11:4:144:11:392:-31.1046,0,-8.79817	0/1:48:12,36:12:424:36:1276:-100.694,0,-24.047	0/1:30:12,18:12:428:18:633:-48.2648,0,-29.8279	0/0:76:76,0:76:2683:0:0:0,-22.8783,-241.707	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086
chr06	20151437	.	G	A	43234	PASS	AB=0.478349;ABP=25.1071;AC=51;AF=0.271277;AN=188;AO=2623;CIGAR=1X;DP=10303;DPB=10303;DPRA=1.23483;EPP=5698.78;EPPR=16669.1;GTI=2;LEN=1;MEANALT=1.01613;MQM=59.9142;MQMR=59.9853;NS=94;NUMALT=1;ODDS=2.20059;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93855;QR=274488;RO=7675;RPL=2623;RPP=5698.78;RPPR=16669.1;RPR=0;RUN=1;SAF=0;SAP=5698.78;SAR=2623;SRF=0;SRP=16669.1;SRR=7675;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:32,35:32:1148:35:1260:-93.5365,0,-83.4608	0/1:95:50,45:50:1776:45:1612:-116.772,0,-131.525	0/1:304:209,95:209:7468:95:3404:-215.036,0,-580.653	0/0:219:219,0:219:7848:0:0:0,-65.9256,-706.302	0/0:55:54,1:54:1932:1:36:0,-12.9584,-170.558	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/1:157:76,81:76:2704:81:2892:-213.255,0,-196.343	0/1:155:87,68:87:3097:68:2399:-169.498,0,-232.297	0/1:79:44,35:44:1576:35:1260:-89.9179,0,-118.35	0/1:76:42,34:42:1500:34:1212:-86.508,0,-112.416	0/0:87:86,0:86:3064:0:0:0,-25.8886,-275.63	0/1:67:30,37:30:1080:37:1328:-99.6313,0,-77.3442	0/1:104:52,52:52:1852:52:1846:-135.112,0,-135.653	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:69:27,42:27:968:42:1504:-114.884,0,-66.6663	0/1:64:39,25:39:1384:25:896:-61.6944,0,-105.593	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:45:20,25:20:720:25:896:-67.414,0,-51.5824	0/1:241:145,96:145:5181:96:3448:-237.984,0,-393.881	0/1:206:117,89:117:4192:89:3192:-225.491,0,-315.449	0/0:119:119,0:119:4244:0:0:0,-35.8226,-382.141	0/1:98:64,34:64:2296:34:1220:-80.5921,0,-177.4	0/0:79:72,7:72:2572:7:252:0,-0.752409,-208.693	0/1:63:41,22:41:1472:22:792:-52.6408,0,-113.811	0/0:271:269,1:269:9620:1:36:0,-78.0396,-862.156	0/1:236:109,127:109:3908:127:4552:-338.792,0,-280.841	0/1:37:18,19:18:648:19:680:-50.3911,0,-47.5138	0/1:280:144,136:144:5148:136:4860:-353.266,0,-379.174	0/1:169:89,80:89:3192:80:2864:-207.123,0,-236.629	0/1:92:50,42:50:1776:42:1496:-107.24,0,-132.428	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5027	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:162:70,92:70:2504:92:3300:-248.452,0,-176.846	0/0:112:112,0:112:3996:0:0:0,-33.7154,-359.831	0/1:58:25,33:25:888:33:1176:-88.688,0,-62.7793	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:189:94,95:94:3341:95:3408:-250.03,0,-244.013	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:197:114,83:114:4076:83:2972:-208.389,0,-307.724	0/1:66:29,37:29:1036:37:1328:-99.9543,0,-73.6859	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:97:97,0:97:3464:0:0:0,-29.1999,-311.927	0/1:155:68,87:68:2432:87:3112:-233.475,0,-172.476	0/0:212:211,1:211:7556:1:36:0,-60.2201,-676.481	0/0:106:106,0:106:3784:0:0:0,-31.9092,-340.76	0/1:209:85,124:85:3036:124:4448:-337.561,0,-210.555	0/0:101:100,0:100:3592:0:0:0,-30.103,-323.126	0/1:16:3,13:3:108:13:464:-37.281,0,-5.25869	0/0:178:177,0:177:6312:0:0:0,-53.2823,-567.816	0/1:122:59,63:59:2108:63:2260:-166.937,0,-153.264	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:199:91,108:91:3256:108:3848:-286.386,0,-233.345	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:19:14,5:14:500:5:180:-10.8278,0,-39.6166	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:117:55,62:55:1972:62:2220:-164.844,0,-142.534	0/0:96:95,1:95:3408:1:36:0,-25.3006,-303.313	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:200:200,0:200:7168:0:0:0,-60.206,-645.175	0/0:206:203,3:203:7268:3:108:0,-51.937,-644.097	0/1:117:69,48:69:2472:48:1720:-119.674,0,-187.513	0/1:102:52,50:52:1860:50:1788:-130.498,0,-136.975	0/0:197:197,0:197:7037:0:0:0,-59.3029,-633.392	0/0:226:220,6:220:7881:6:216:0,-48.2423,-689.523	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:17:13,4:13:468:4:144:-8.19611,0,-37.3421	0/0:117:116,1:116:4148:1:36:0,-31.6222,-369.906	0/1:86:40,46:40:1440:46:1652:-123.08,0,-104.009	0/1:320:171,149:171:6128:149:5295:-380.339,0,-455.281	0/0:199:199,0:199:7124:0:0:0,-59.905,-641.218	0/0:199:198,1:198:7069:1:36:0,-56.3067,-632.665	0/0:151:150,1:150:5360:1:36:0,-41.8573,-478.932	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/0:126:125,1:125:4476:1:36:0,-34.3315,-399.411	0/0:199:199,0:199:7120:0:0:0,-59.905,-640.853	0/0:200:199,0:199:7082:0:0:0,-59.905,-637.082	0/1:60:29,31:29:1040:31:1098:-81.0647,0,-75.8526	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/1:47:28,19:28:996:19:684:-47.7419,0,-75.8065	0/1:132:61,71:61:2184:71:2556:-190.554,0,-157.09	0/1:26:17,9:17:604:9:324:-21.6791,0,-46.8638	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/1:57:26,31:26:928:31:1112:-83.2326,0,-66.6795	0/1:136:75,61:75:2676:61:2169:-154.535,0,-200.146	0/1:71:27,44:27:968:44:1580:-121.118,0,-66.0642	0/0:150:150,0:150:5392:0:0:0,-45.1545,-485.408	0/0:99:98,1:98:3504:1:36:0,-26.2037,-311.973
chr06	20398513	.	TGAT	GGAT,GGAC	230113	PASS	AB=0.501042,0.492185;ABP=3.06461,6.06499;AC=137,51;AF=0.728723,0.271277;AN=188;AO=8089,2857;CIGAR=1X3M,1X2M1X;DP=11013;DPB=11013.5;DPRA=39.4624,1.06831;EPP=17498.6,6189.55;EPPR=39.9253;GTI=2;LEN=1,4;MEANALT=2.12903,2.53333;MQM=59.9518,59.6577;MQMR=59;NS=94;NUMALT=2;ODDS=0.273181;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=18,18;PQR=0;PRO=0;QA=284964,100480;QR=466;RO=17;RPL=8,2;RPP=17498.6,6189.55;RPPR=39.9253;RPR=8081,2855;RUN=1,1;SAF=0,0;SAP=17568.1,6206.91;SAR=8089,2857;SRF=0;SRP=39.9253;SRR=17;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,27,19:0:0:27,19:951,670:-132.33,-54.9059,-46.7781,-77.7765,0,-72.0569	1/2:189:0,91,97:0:0:91,97:3174,3411:-535.574,-277.438,-250.044,-258.126,0,-228.926	1/2:114:0,63,51:0:0:63,51:2197,1777:-323.528,-144.848,-125.883,-179.028,0,-163.676	1/1:227:0,227,0:0:0:227,0:7998,0:-719.827,-68.3338,0,-719.827,-68.3338,-719.827	1/1:103:0,100,3:0:0:100,3:3545,101:-318.922,-30.103,0,-310.739,-21.5827,-309.836	1/1:64:0,64,0:0:0:64,0:2254,0:-203.123,-19.2659,0,-203.123,-19.2659,-203.123	1/1:111:0,110,0:0:0:110,0:3879,0:-349.054,-33.1133,0,-349.054,-33.1133,-349.054	1/2:214:0,90,124:0:0:90,124:3182,4315:-610.322,-351.16,-324.068,-259.513,0,-222.185	1/2:146:0,65,79:0:0:65,79:2293,2793:-414.164,-227.453,-207.886,-186.757,0,-162.976	1/2:130:0,67,63:0:0:67,63:2358,2209:-372.058,-180.099,-159.93,-192.31,0,-173.345	1/2:35:0,14,21:0:0:14,21:487,727:-99.0247,-59.427,-55.2125,-39.9448,0,-33.6231	1/1:82:0,82,0:0:0:82,0:2869,0:-258.444,-24.6845,0,-258.444,-24.6845,-258.444	1/2:91:0,40,51:0:0:40,51:1385,1824:-261.638,-149.086,-137.045,-112.903,0,-97.5509	1/2:52:0,23,29:0:0:23,29:798,1013:-147.612,-82.747,-75.8233,-65.2129,0,-56.4831	1/1:90:0,89,0:0:0:89,0:3102,0:-279.175,-26.7917,0,-279.175,-26.7917,-279.175	1/2:55:0,30,25:0:0:30,25:1048,867:-156.066,-70.8174,-61.7865,-85.5964,0,-78.0707	1/2:80:1,47,32:1:28:47,32:1616,1102:-218.166,-87.2388,-75.3072,-129.073,0,-121.658	1/1:65:0,65,0:0:0:65,0:2304,0:-207.612,-19.567,0,-207.612,-19.567,-207.612	1/2:24:0,10,13:0:0:10,13:351,452:-65.4159,-36.8452,-33.8349,-28.6845,0,-24.7711	1/2:340:0,177,162:0:0:177,162:6272,5756:-979.97,-469.032,-415.749,-510.933,0,-462.166	1/2:200:0,90,110:0:0:90,110:3182,3851:-572.372,-313.648,-286.555,-259.076,0,-225.963	1/1:103:1,101,0:1:36:101,0:3582,0:-319.019,-27.4367,0,-319.32,-30.404,-322.258	1/2:75:0,42,33:0:0:42,33:1457,1147:-211.969,-93.5412,-80.898,-118.718,0,-108.784	1/2:160:1,140,18:1:29:140,18:4899,634:-447.648,-49.3744,-9.53599,-396.333,0,-393.223	1/2:127:0,53,73:0:0:53,73:1896,2572:-364.051,-209.442,-193.488,-154.662,0,-132.687	1/1:319:0,317,2:0:0:317,2:11166,72:-1004.49,-95.4265,0,-998.611,-89.1918,-998.009	1/2:290:2,149,138:2:54:149,138:5302,4880:-824.615,-393.107,-352.51,-427.907,0,-390.621	1/1:53:1,52,0:1:24:52,0:1819,0:-161.587,-13.5547,0,-161.888,-15.6536,-163.745	1/2:465:1,241,217:1:24:241,217:8522,7646:-1314.36,-620.582,-549.892,-692.273,0,-628.808	1/2:163:0,87,76:0:0:87,76:3070,2685:-468.985,-219.011,-192.821,-250.327,0,-227.448	1/2:164:0,65,98:0:0:65,98:2307,3422:-466.173,-278.202,-258.635,-188.022,0,-158.521	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:3:0,3,0:0:0:3,0:100,0:-9.33044,-0.90309,0,-9.33044,-0.90309,-9.33044	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:257:0,112,144:0:0:112,144:3954,5092:-736.717,-414.755,-381.04,-322.034,0,-278.686	1/1:134:0,134,0:0:0:134,0:4752,0:-427.818,-40.338,0,-427.818,-40.338,-427.818	1/2:45:0,26,19:0:0:26,19:928,662:-129.83,-54.1741,-46.3473,-76.0081,0,-70.2886	1/2:5:0,2,3:0:0:2,3:72,108:-15.0329,-9.15787,-8.55581,-6.23466,0,-5.33157	1/2:383:1,184,198:1:24:184,198:6564,7017:-1104.63,-569.833,-516.301,-533.354,0,-475.608	1/1:36:0,36,0:0:0:36,0:1277,0:-115.231,-10.8371,0,-115.231,-10.8371,-115.231	1/2:203:0,115,86:0:0:115,86:4004,3005:-570.142,-244.56,-209.942,-325.707,0,-299.818	1/2:101:0,41,59:0:0:41,59:1427,2063:-283.509,-167.477,-155.135,-116.166,0,-98.4055	1/1:94:0,92,1:0:0:92,1:3214,36:-289.123,-27.6948,0,-286.185,-24.7573,-285.884	1/1:139:0,139,0:0:0:139,0:4916,0:-442.595,-41.8432,0,-442.595,-41.8432,-442.595	1/2:155:0,93,59:0:0:93,59:3309,2084:-439.408,-169.73,-141.734,-269.695,0,-251.934	1/1:237:1,232,3:1:30:232,3:8149,108:-730.139,-67.4468,0,-721.628,-60.9756,-723.123	1/1:127:0,126,0:0:0:126,0:4451,0:-400.511,-37.9298,0,-400.511,-37.9298,-400.511	1/2:213:1,104,107:1:30:104,107:3704,3783:-607.345,-305.788,-276.879,-299.557,0,-269.745	1/1:151:0,151,0:0:0:151,0:5330,0:-479.82,-45.4555,0,-479.82,-45.4555,-479.82	1/2:4:0,1,3:0:0:1,3:36,107:-12.0173,-9.07908,-8.77805,-3.29724,0,-2.39415	1/1:175:0,175,0:0:0:175,0:6165,0:-554.954,-52.6803,0,-554.954,-52.6803,-554.954	1/2:29:0,8,21:0:0:8,21:261,722:-80.0442,-58.9754,-56.5672,-21.3998,0,-15.0782	1/2:10:0,5,5:0:0:5,5:176,177:-29.0872,-14.7601,-13.2549,-14.6799,0,-13.1747	1/2:137:0,76,60:0:0:76,60:267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chr06	21137336	.	CAA	TAA	158962	PASS	AB=0.499362;ABP=3.02693;AC=138;AF=0.734043;AN=188;AO=7450;CIGAR=1X2M;DP=9831;DPB=9832.67;DPRA=17.6075;EPP=16093.7;EPPR=5075.8;GTI=2;LEN=1;MEANALT=1.10753;MQM=58.7808;MQMR=59.921;NS=94;NUMALT=1;ODDS=2.81724;PAIRED=0;PAIREDR=0;PAO=2.5;PQA=90;PQR=0;PRO=0;QA=266324;QR=83640;RO=2368;RPL=7419;RPP=15912.3;RPPR=5007.02;RPR=31;RUN=1;SAF=7427;SAP=15981.3;SAR=23;SRF=2360;SRP=5075.8;SRR=8;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:29,21:29:1040:21:756:-53.1572,0,-78.8631	0/1:156:81,74:81:2853:74:2656:-191.848,0,-209.812	0/1:151:71,80:71:2490:80:2872:-212.94,0,-178.838	1/1:160:0,160:0:0:160:5690:-512.098,-48.1648,0	1/1:105:5,100:5:178:100:3543:-302.696,-15.2395,0	1/1:66:0,66:0:0:66:2365:-212.34,-19.868,0	1/1:91:0,90:0:0:90:3232:-290.49,-27.0927,0	0/1:187:99,88:99:3523:88:3154:-227.266,0,-260.987	0/1:104:50,54:50:1765:54:1936:-142.896,0,-127.824	0/1:99:43,56:43:1519:56:2016:-151.869,0,-107.2	0/1:61:26,35:26:921:35:1252:-94.5352,0,-64.8448	1/1:71:0,71:0:0:71:2529:-226.908,-21.3731,0	0/1:67:33,34:33:1158:34:1220:-89.7658,0,-84.3564	0/1:102:59,43:59:2078:43:1540:-108.016,0,-156.585	1/1:75:0,75:0:0:75:2688:-242.083,-22.5773,0	0/1:47:24,23:24:848:23:824:-60.169,0,-62.4459	0/1:50:25,25:25:873:25:892:-65.3212,0,-63.7758	1/1:57:0,57:0:0:57:2039:-183.722,-17.1587,0	0/1:51:31,20:31:1107:20:705:-48.4033,0,-84.5888	0/1:324:166,157:166:5863:157:5627:-408.298,0,-430.199	0/1:169:81,88:81:2853:88:3136:-231.359,0,-206.133	1/1:113:0,113:0:0:113:4051:-364.513,-34.0164,0	0/1:114:65,49:65:2291:49:1741:-122.655,0,-172.133	0/1:112:53,59:53:1888:59:2116:-156.832,0,-136.424	0/1:82:41,41:41:1454:41:1472:-108.084,0,-106.471	1/1:285:0,284:0:0:284:10155:-913.023,-85.4925,0	1/1:248:0,248:0:0:248:8906:-800.909,-74.6554,0	1/1:34:1,33:1:36:33:1176:-102.461,-6.63675,0	0/1:344:162,182:162:5696:182:6521:-483.087,0,-409.213	0/1:106:48,58:48:1703:58:2059:-153.559,0,-121.633	0/1:117:60,57:60:2123:57:2040:-148.522,0,-156.117	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:5:0,5:0:0:5:180:-16.5474,-1.50515,0	0/1:4:2,2:2:72:2:72:-5.63069,0,-5.6326	0/1:7:1,3:1:36:3:104:-8.16432,0,-2.04484	0/1:191:86,105:86:3083:105:3766:-281.558,0,-220.201	1/1:193:0,192:0:0:192:6858:-616.165,-57.7978,0	0/1:76:39,37:39:1392:37:1332:-97.1968,0,-102.701	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:136:0,136:0:0:136:4841:-435.381,-40.9401,0	1/1:35:0,35:0:0:35:1256:-113.342,-10.5361,0	0/1:166:69,97:69:2425:97:3476:-262.786,0,-168.51	0/1:77:49,28:49:1714:28:999:-66.8874,0,-131.364	1/1:64:0,64:0:0:64:2288:-206.137,-19.2659,0	1/1:90:1,89:1:36:89:3186:-283.2,-23.4944,0	0/1:214:124,89:124:4346:89:3183:-221.744,0,-326.678	1/1:245:0,245:0:0:245:8733:-785.219,-73.7524,0	1/1:122:0,122:0:0:122:4340:-390.473,-36.7257,0	0/1:179:85,94:85:3020:94:3361:-248.479,0,-218.136	1/1:122:0,122:0:0:122:4370:-392.951,-36.7257,0	0/1:8:4,4:4:136:4:140:-10.5072,0,-10.1667	1/1:146:0,146:0:0:146:5248:-472.121,-43.9504,0	0/1:19:8,11:8:284:11:392:-29.9005,0,-20.184	0/1:25:13,12:13:466:12:432:-31.6845,0,-34.7529	0/1:178:77,101:77:2723:101:3616:-271.84,0,-191.731	1/1:64:0,64:0:0:64:2281:-205.394,-19.2659,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.425	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:62:30,32:30:1047:32:1148:-84.9642,0,-75.8622	1/1:91:0,91:0:0:91:3248:-292.456,-27.3937,0	0/1:5:4,1:4:142:1:32:-1.69416,0,-11.6241	1/1:188:0,188:0:0:188:6705:-603.264,-56.5936,0	1/1:168:0,167:0:0:167:5972:-537.004,-50.272,0	0/1:100:40,60:40:1362:60:2139:-162.609,0,-92.7681	0/1:89:46,43:46:1624:43:1531:-111.233,0,-119.655	1/1:227:1,226:1:36:226:8056:-720.867,-64.7355,0	1/1:126:7,119:7:252:119:4261:-360.532,-14.9008,0	1/1:32:0,32:0:0:32:1144:-102.721,-9.63296,0	1/1:101:0,101:0:0:101:3607:-324.164,-30.404,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	0/1:26:14,12:14:495:12:432:-31.3944,0,-37.0563	1/1:130:0,130:0:0:130:4656:-418.677,-39.1339,0	0/1:63:33,30:33:1170:30:1050:-75.74,0,-86.6424	0/1:196:96,100:96:3403:100:3577:-262.911,0,-247.484	1/1:230:0,230:0:0:230:8264:-743.474,-69.2369,0	1/1:110:0,110:0:0:110:3908:-351.464,-33.1133,0	1/1:204:0,204:0:0:204:7279:-653.952,-61.4101,0	0/1:7:5,2:5:180:2:72:-4.72693,0,-14.4449	1/1:99:0,99:0:0:99:3530:-317.788,-29.802,0	1/1:155:0,155:0:0:155:5530:-497.494,-46.6597,0	1/1:241:0,241:0:0:241:8585:-772.433,-72.5482,0	0/1:84:45,39:45:1589:39:1392:-100.235,0,-117.98	1/1:60:0,60:0:0:60:2156:-194.279,-18.0618,0	0/1:84:39,45:39:1374:45:1608:-119.695,0,-98.6705	0/1:120:65,55:65:2300:55:1956:-140.013,0,-171.138	0/1:39:18,21:18:643:21:752:-56.1785,0,-46.4603	1/1:67:0,67:0:0:67:2412:-216.95,-20.169,0	1/1:59:0,59:0:0:59:2100:-189.045,-17.7608,0	0/1:40:22,18:22:780:18:648:-46.5407,0,-58.4817	0/1:86:41,44:41:1454:44:1575:-116.003,0,-105.214	0/1:60:43,17:43:1512:17:608:-36.9902,0,-118.308	1/1:125:0,125:0:0:125:4473:-402.652,-37.6288,0	1/1:95:0,93:0:0:93:3336:-300.113,-27.9958,0
chr06	21137351	.	T	C	418967	PASS	AB=0.529679;ABP=67.0702;AC=139;AF=0.739362;AN=188;AO=15601;CIGAR=1X;DP=19573;DPB=19573;DPRA=0;EPP=33802;EPPR=8519.7;GTI=3;LEN=1;MEANALT=1.09574;MQM=59.4225;MQMR=59.9651;NS=94;NUMALT=1;ODDS=3.31397;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=548017;QR=137934;RO=3958;RPL=7392;RPP=95.9168;RPPR=195.285;RPR=8209;RUN=1;SAF=7401;SAP=91.8681;SAR=8200;SRF=2284;SRP=207.155;SRR=1674;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:87:43,44:43:1495:44:1544:-112.944,0,-108.65	0/1:323:149,174:149:5181:174:6162:-457.037,0,-369.191	0/1:265:119,146:119:4183:146:5097:-378.941,0,-296.884	1/1:321:0,320:0:0:320:11155:-1003.49,-96.3296,0	1/1:208:5,198:5:180:198:6981:-611.759,-44.9129,0	1/1:110:0,110:0:0:110:3860:-346.544,-33.1133,0	1/1:258:0,258:0:0:258:9061:-815.207,-77.6657,0	0/1:336:169,167:169:5863:167:5868:-426.525,0,-426.65	0/1:212:105,107:105:3645:107:3776:-276.106,0,-264.442	0/1:196:78,118:78:2705:118:4121:-312.043,0,-184.693	0/1:76:35,41:35:1234:41:1437:-106.738,0,-88.4844	1/1:129:0,129:0:0:129:4469:-402.158,-38.8329,0	0/1:121:57,64:57:1971:64:2198:-161.491,0,-141.22	0/1:140:82,58:82:2880:58:2005:-138.506,0,-217.293	1/1:140:0,140:0:0:140:4906:-441.604,-42.1442,0	0/1:88:41,47:41:1422:47:1643:-121.502,0,-101.739	0/1:82:37,45:37:1299:45:1558:-115.662,0,-92.5251	1/1:101:0,101:0:0:101:3531:-317.949,-30.404,0	0/1:79:42,37:42:1464:37:1306:-93.9749,0,-108.27	0/1:507:247,259:247:8694:259:9066:-663.214,0,-629.938	0/1:336:163,173:163:5683:173:6055:-443.832,0,-409.51	1/1:218:1,216:1:36:216:7618:-681.853,-62.0851,0	0/1:197:104,93:104:3627:93:3294:-237.379,0,-267.338	0/1:251:135,116:135:4614:116:4100:-293.57,0,-339.876	0/1:173:77,95:77:2654:95:3349:-249.483,0,-186.971	1/1:611:2,609:2:72:609:21460:-1923.8,-177.093,0	1/1:529:0,527:0:0:527:18527:-1666.41,-158.643,0	1/1:88:1,87:1:36:87:3031:-269.335,-22.8924,0	0/1:611:242,369:242:8498:369:12879:-974.896,0,-580.909	0/1:225:85,140:85:2935:140:4915:-374.677,0,-196.643	0/1:236:111,125:111:3855:125:4423:-327.126,0,-276.108	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:19:0,19:0:0:19:656:-59.3594,-5.71957,0	1/1:6:0,6:0:0:6:208:-19.0559,-1.80618,0	0/1:8:4,4:4:140:4:144:-10.9035,0,-10.5363	0/1:7:1,6:1:36:6:207:-16.6888,0,-1.49106	0/1:375:173,202:173:5946:202:7084:-524.664,0,-422.379	1/1:367:0,367:0:0:367:12852:-1155.37,-110.478,0	0/1:115:54,61:54:1902:61:2102:-154.766,0,-136.838	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:474:0,474:0:0:474:16695:-1501.87,-142.688,0	1/1:67:0,67:0:0:67:2326:-209.595,-20.169,0	0/1:336:142,194:142:4950:194:6807:-511.32,0,-344.513	0/1:141:78,63:78:2725:63:2162:-152.377,0,-203.05	1/1:118:0,118:0:0:118:4130:-371.888,-35.5215,0	1/1:246:0,246:0:0:246:8679:-780.999,-74.0534,0	0/1:368:189,179:189:6614:179:6333:-458.785,0,-484.574	1/1:403:0,403:0:0:403:14196:-1276.59,-121.315,0	1/1:230:0,230:0:0:230:8062:-725.222,-69.2369,0	0/1:264:112,151:112:3958:151:5360:-402.514,0,-276.882	1/1:347:0,347:0:0:347:12255:-1102,-104.457,0	0/1:9:5,4:5:180:4:136:-9.86627,0,-13.8428	1/1:893:1,892:1:36:892:31523:-2832.42,-265.222,0	0/1:52:19,33:19:672:33:1161:-89.1412,0,-45.1533	0/1:28:13,15:13:460:15:540:-40.4968,0,-33.3065	0/1:287:119,168:119:4179:168:5881:-442.466,0,-289.832	1/1:133:0,133:0:0:133:4656:-419.097,-40.037,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:117:49,68:49:1708:68:2396:-180.674,0,-118.712	1/1:176:0,176:0:0:176:6152:-553.724,-52.9813,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:342:0,342:0:0:342:12021:-1081.43,-102.952,0	1/1:361:1,360:1:36:360:12671:-1135.82,-105.074,0	0/1:155:65,90:65:2254:90:3202:-241.672,0,-156.462	0/1:132:66,66:66:2340:66:2328:-169.641,0,-171.124	1/1:374:2,372:2:72:372:13103:-1171.62,-105.748,0	1/1:237:9,227:9:316:227:8017:-692.742,-42.5063,0	1/1:43:0,43:0:0:43:1490:-133.406,-12.9443,0	1/1:199:0,199:0:0:199:6992:-628.652,-59.905,0	1/1:124:0,124:0:0:124:4322:-389.159,-37.3277,0	0/1:30:16,14:16:568:14:504:-36.6672,0,-42.421	1/1:244:0,244:0:0:244:8548:-768.824,-73.4513,0	0/1:160:74,86:74:2550:86:3015:-223.309,0,-181.585	0/1:296:151,145:151:5261:145:5113:-370.986,0,-384.532	1/1:535:0,535:0:0:535:18820:-1691.94,-161.051,0	1/1:227:0,227:0:0:227:7985:-718.021,-68.3338,0	1/1:329:0,329:0:0:329:11509:-1033.92,-99.0389,0	0/1:15:8,7:8:265:7:252:-18.511,0,-19.6566	1/1:338:0,338:0:0:338:11885:-1069.44,-101.748,0	1/1:280:0,280:0:0:280:9838:-885.063,-84.2884,0	1/1:525:1,524:1:36:524:18515:-1662.25,-154.442,0	0/1:141:75,66:75:2598:66:2348:-169.048,0,-191.621	1/1:118:0,118:0:0:118:4176:-375.968,-35.5215,0	0/1:157:71,86:71:2440:86:2991:-222.149,0,-172.593	0/1:230:120,110:120:4156:110:3841:-276.508,0,-304.995	0/1:90:32,58:32:1096:58:2014:-154.353,0,-71.8501	1/1:139:0,139:0:0:139:4853:-436.48,-41.8432,0	1/1:116:0,116:0:0:116:4010:-360.685,-34.9195,0	0/1:62:29,33:29:1015:33:1117:-82.0943,0,-72.997	0/1:119:53,66:53:1837:66:2267:-168.346,0,-129.786	0/1:117:80,37:80:2786:37:1292:-81.359,0,-215.761	1/1:277:0,276:0:0:276:9693:-871.931,-83.0843,0	1/1:183:0,183:0:0:183:6395:-575.58,-55.0885,0
chr06	21210370	.	A	G	15285.6	PASS	AB=0.463789;ABP=26.7569;AC=48;AF=0.255319;AN=188;AO=973;CIGAR=1X;DP=4543;DPB=4543;DPRA=0.917655;EPP=2115.85;EPPR=7753;GTI=2;LEN=1;MEANALT=1;MQM=59.9733;MQMR=59.9823;NS=94;NUMALT=1;ODDS=2.5919;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34522;QR=127254;RO=3569;RPL=0;RPP=2115.85;RPPR=7744.31;RPR=973;RUN=1;SAF=0;SAP=2115.85;SAR=973;SRF=1;SRP=7744.31;SRR=3568;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:38:20,18:20:720:18:636:-46.1289,0,-53.6896	0/1:82:54,28:54:1932:28:985:-64.2771,0,-149.472	0/0:90:90,0:90:3215:0:0:0,-27.0927,-289.572	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6592	0/0:76:76,0:76:2714:0:0:0,-22.8783,-244.503	0/1:50:28,22:28:1008:22:775:-55.0163,0,-75.9849	0/1:30:15,15:15:540:15:536:-39.5439,0,-39.9056	0/1:41:28,13:28:975:13:464:-29.7553,0,-75.7166	0/1:36:13,23:13:468:23:828:-64.007,0,-31.6226	0/0:74:73,1:73:2606:1:36:0,-18.6779,-231.189	0/1:56:25,31:25:876:31:1107:-83.0825,0,-62.2966	0/1:36:13,23:13:446:23:790:-60.5779,0,-29.6293	0/0:59:59,0:59:2090:0:0:0,-17.7608,-188.369	0/1:32:13,19:13:459:19:661:-50.1787,0,-32.0111	0/1:37:18,19:18:644:19:680:-50.3911,0,-47.1525	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.0815	0/1:69:47,22:47:1675:22:788:-50.4737,0,-130.265	0/1:99:62,37:62:2215:37:1302:-87.6776,0,-169.812	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:42:23,19:23:811:19:684:-49.2471,0,-60.6667	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:30:22,8:22:768:8:284:-16.8725,0,-60.4067	0/0:64:64,0:64:2264:0:0:0,-19.2659,-204.021	0/0:184:184,0:184:6586:0:0:0,-55.3895,-592.819	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2702	0/1:81:33,48:33:1179:48:1720:-130.702,0,-82.0338	0/1:57:30,27:30:1080:27:959:-69.4667,0,-80.3545	0/1:43:26,17:26:936:17:608:-42.1077,0,-71.6152	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:20:18,2:18:644:2:72:-0.816123,0,-52.27	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:152:83,69:83:2932:69:2444:-174.457,0,-218.358	0/0:42:42,0:42:1480:0:0:0,-12.6433,-133.492	0/1:44:18,26:18:648:26:919:-69.7808,0,-45.4066	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:57:35,22:35:1247:22:774:-52.8215,0,-95.3754	0/1:50:19,31:19:680:31:1101:-84.3469,0,-46.4777	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/0:54:53,0:53:1884:0:0:0,-15.9546,-169.626	0/1:46:22,24:22:788:24:851:-63.0621,0,-57.3974	0/0:55:55,0:55:1933:0:0:0,-16.5566,-174.245	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:49:26,23:26:932:23:828:-60.0072,0,-69.4484	0/0:102:101,1:101:3595:1:36:0,-27.1068,-320.16	0/1:9:6,3:6:207:3:108:-7.3659,0,-16.2576	0/0:62:62,0:62:2206:0:0:0,-18.6639,-198.804	0/1:41:25,16:25:892:16:576:-39.8328,0,-68.2575	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/1:67:29,38:29:1021:38:1355:-102.081,0,-72.0312	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:45:29,16:29:1040:16:563:-37.4528,0,-80.368	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:9:3,6:3:108:6:208:-16.3498,0,-7.3659	0/0:70:70,0:70:2494:0:0:0,-21.0721,-224.712	0/0:73:73,0:73:2595:0:0:0,-21.9752,-233.799	0/1:27:18,9:18:644:9:320:-21.0145,0,-50.1628	0/1:27:15,12:15:532:12:428:-30.731,0,-40.0853	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/0:97:96,1:96:3413:1:36:0,-25.6016,-303.786	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:16:8,8:8:288:8:279:-20.6311,0,-21.4509	0/0:77:77,0:77:2719:0:0:0,-23.1793,-244.923	0/1:41:18,23:18:648:23:813:-61.1469,0,-46.3097	0/1:52:33,19:33:1176:19:684:-46.2368,0,-90.4942	0/0:98:98,0:98:3494:0:0:0,-29.5009,-314.671	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:61:59,2:59:2116:2:72:0,-11.5261,-183.872	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/1:54:26,28:26:928:28:1008:-74.7807,0,-67.5826	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.395	0/1:30:16,14:16:567:14:488:-35.2195,0,-42.3298	0/1:88:47,41:47:1688:41:1441:-103.493,0,-125.716	0/1:14:5,9:5:180:9:309:-23.9263,0,-12.3376	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/1:29:16,13:16:572:13:456:-32.6434,0,-43.0836	0/1:104:53,51:53:1885:51:1809:-131.783,0,-138.429	0/1:63:24,39:24:860:39:1373:-104.903,0,-58.7569	0/0:46:45,1:45:1599:1:36:0,-10.2491,-140.601	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98
chr06	21279214	.	A	C	100981	PASS	AB=0.444794;ABP=87.1649;AC=141;AF=0.75;AN=188;AO=5074;CIGAR=1X;DP=6852;DPB=6852;DPRA=73.6667;EPP=10986.3;EPPR=3861.72;GTI=1;LEN=1;MEANALT=1.01075;MQM=40.9832;MQMR=51.7338;NS=94;NUMALT=1;ODDS=1.86137;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180623;QR=63363;RO=1777;RPL=5070;RPP=10986.3;RPPR=3861.72;RPR=4;RUN=1;SAF=0;SAP=11021.1;SAR=5074;SRF=0;SRP=3861.72;SRR=1777;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:9,14:9:324:14:489:-35.1047,0,-22.508	0/1:97:36,61:36:1288:61:2192:-161.7,0,-86.2141	0/1:104:61,43:61:2184:43:1521:-101.425,0,-164.969	1/1:200:1,199:1:36:199:7095:-612.496,-56.6087,0	1/1:7:0,7:0:0:7:252:-21.4335,-2.10721,0	1/1:33:0,33:0:0:33:1165:-101.874,-9.93399,0	1/1:60:0,60:0:0:60:2148:-186.702,-18.0618,0	0/1:79:42,37:42:1512:37:1302:-90.0795,0,-111.942	0/1:101:62,39:62:2208:39:1395:-90.6955,0,-167.646	0/1:83:38,45:38:1348:45:1601:-114.781,0,-96.279	0/1:36:16,20:16:576:20:720:-52.2561,0,-41.024	1/1:103:0,103:0:0:103:3670:-319.253,-31.0061,0	0/1:80:44,36:44:1568:36:1264:-85.796,0,-116.987	0/1:38:18,20:18:640:20:689:-49.1056,0,-46.3157	1/1:82:0,81:0:0:81:2878:-249.176,-24.3834,0	0/1:44:20,24:20:720:24:864:-62.3057,0,-51.6414	0/1:20:11,9:11:396:9:320:-22.1336,0,-29.8141	1/1:29:0,29:0:0:29:1044:-91.1942,-8.72987,0	1/1:22:0,22:0:0:22:778:-66.7183,-6.62266,0	0/1:156:104,52:104:3715:52:1841:-112.189,0,-285.942	0/1:145:85,60:85:3024:60:2148:-142.752,0,-227.662	1/1:58:0,58:0:0:58:2074:-180.29,-17.4597,0	0/1:108:61,47:61:2192:47:1684:-113.064,0,-164.529	0/1:81:40,41:40:1411:41:1472:-103.651,0,-102.429	0/1:54:30,24:30:1067:24:841:-57.4226,0,-79.8466	1/1:238:0,238:0:0:238:8432:-731.862,-71.6451,0	1/1:189:0,189:0:0:189:6715:-584.248,-56.8947,0	1/1:37:0,37:0:0:37:1332:-116.255,-11.1381,0	0/1:217:109,108:109:3867:108:3833:-267.549,0,-281.809	0/1:199:104,95:104:3676:95:3369:-228.855,0,-270.048	0/1:79:54,25:54:1932:25:890:-53.2687,0,-149.283	1/1:8:0,8:0:0:8:288:-25.4091,-2.40824,0	1/1:9:0,9:0:0:9:324:-28.5417,-2.70927,0	1/1:2:0,2:0:0:2:72:-6.61332,-0.60206,0	0/1:5:3,2:3:108:2:72:-5.10817,0,-8.50669	1/1:5:0,5:0:0:5:180:-16.0112,-1.50515,0	0/1:215:110,105:110:3914:105:3719:-259.738,0,-286.801	1/1:104:0,104:0:0:104:3728:-324.325,-31.3071,0	0/1:29:16,13:16:568:13:460:-31.7836,0,-42.6006	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	1/1:113:0,113:0:0:113:4028:-350.718,-34.0164,0	1/1:18:0,18:0:0:18:648:-56.7353,-5.41854,0	0/1:74:48,26:48:1716:26:913:-57.7732,0,-131.894	0/1:43:20,23:20:712:23:798:-56.9492,0,-51.3157	1/1:61:0,61:0:0:61:2188:-189.186,-18.3628,0	1/1:88:0,88:0:0:88:3103:-270.839,-26.4906,0	0/1:75:45,30:45:1616:30:1080:-71.7496,0,-122.734	1/1:129:0,129:0:0:129:4625:-401.216,-38.8329,0	1/1:66:0,66:0:0:66:2353:-204.702,-19.868,0	0/1:98:63,35:63:2245:35:1256:-80.2953,0,-172.162	1/1:106:0,106:0:0:106:3793:-329.111,-31.9092,0	0/1:5:1,4:1:36:4:144:-11.3734,0,-2.08408	1/1:70:0,70:0:0:70:2501:-218.084,-21.0721,0	0/1:45:25,20:25:896:20:705:-47.8548,0,-67.0423	0/1:11:8,3:8:288:3:108:-6.43462,0,-22.89	0/1:112:55,57:55:1960:57:2029:-141.685,0,-142.154	1/1:17:0,17:0:0:17:612:-53.6027,-5.11751,0	0/1:11:7,4:7:252:4:144:-9.56724,0,-19.4754	1/1:11:0,11:0:0:11:396:-34.827,-3.31133,0	0/1:37:21,16:21:752:16:572:-39.1375,0,-56.3422	1/1:80:0,80:0:0:80:2868:-250.258,-24.0824,0	1/1:5:0,5:0:0:5:180:-16.0112,-1.50515,0	1/1:206:0,206:0:0:206:7313:-636.386,-62.0122,0	1/1:123:2,121:2:72:121:4336:-370.612,-30.2072,0	0/1:62:31,31:31:1108:31:1101:-76.7318,0,-80.9359	0/1:53:36,17:36:1268:17:608:-37.0329,0,-98.1974	1/1:115:0,115:0:0:115:4104:-358.384,-34.6185,0	1/1:110:8,102:8:288:102:3604:-287.297,-6.91193,0	1/1:15:0,15:0:0:15:527:-46.2287,-4.51545,0	1/1:23:0,23:0:0:23:824:-72.0981,-6.92369,0	1/1:39:0,39:0:0:39:1385:-120.138,-11.7402,0	0/1:12:10,2:10:351:2:57:-1.68925,0,-27.1199	1/1:108:0,108:0:0:108:3842:-332.942,-32.5112,0	0/1:60:33,27:33:1165:27:964:-66.2668,0,-86.8186	0/1:73:40,33:40:1409:33:1158:-79.2879,0,-104.829	1/1:120:0,120:0:0:120:4262:-371.116,-36.1236,0	1/1:24:0,24:0:0:24:860:-75.2308,-7.22472,0	1/1:73:0,73:0:0:73:2590:-225.523,-21.9752,0	0/1:6:3,3:3:108:3:108:-7.93977,0,-8.24366	1/1:65:0,65:0:0:65:2305:-200.48,-19.567,0	1/1:78:0,78:0:0:78:2792:-242.664,-23.4803,0	1/1:187:0,187:0:0:187:6633:-576.246,-56.2926,0	0/1:57:27,30:27:972:30:1061:-75.6208,0,-70.2363	1/1:63:0,63:0:0:63:2253:-195.966,-18.9649,0	0/1:42:25,17:25:892:17:608:-40.6585,0,-67.5835	0/1:129:72,57:72:2580:57:2037:-137.163,0,-193.031	0/1:26:17,9:17:612:9:320:-20.4123,0,-47.2647	1/1:68:0,68:0:0:68:2421:-210.408,-20.47,0	1/1:62:0,62:0:0:62:2231:-192.068,-18.6639,0	0/1:13:9,4:9:324:4:144:-8.96518,0,-25.5183	0/1:55:30,25:30:1080:25:896:-61.2304,0,-80.5456	0/1:87:66,21:66:2351:21:756:-39.9436,0,-184.508	1/1:149:0,149:0:0:149:5254:-455.612,-44.8535,0	1/1:94:0,94:0:0:94:3364:-291.357,-28.2968,0
chr06	21563212	.	A	T	26791.9	PASS	AB=0.465389;ABP=39.3862;AC=46;AF=0.244681;AN=188;AO=1636;CIGAR=1X;DP=7499;DPB=7499;DPRA=1.09714;EPP=3520.88;EPPR=12632.5;GTI=1;LEN=1;MEANALT=1.0566;MQM=59.9694;MQMR=59.9956;NS=94;NUMALT=1;ODDS=1.35904;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58527;QR=209713;RO=5860;RPL=1633;RPP=3529.53;RPPR=12632.5;RPR=3;RUN=1;SAF=1635;SAP=3546.86;SAR=1;SRF=5860;SRP=12727.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:33,20:33:1165:20:720:-49.1742,0,-89.2004	0/1:62:37,25:37:1324:25:857:-58.7673,0,-100.798	0/1:141:69,72:69:2464:72:2579:-189.913,0,-179.569	0/0:137:137,0:137:4924:0:0:0,-41.2411,-443.308	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.225	0/0:108:108,0:108:3856:0:0:0,-32.5112,-347.223	0/1:100:52,48:52:1864:48:1722:-125.163,0,-137.936	0/1:78:44,34:44:1584:34:1207:-85.4534,0,-119.371	0/1:82:45,37:45:1604:37:1324:-94.7776,0,-119.966	0/1:63:37,26:37:1324:26:921:-64.2403,0,-100.497	0/0:115:114,1:114:4084:1:36:0,-31.0202,-364.147	0/1:63:31,32:31:1116:32:1135:-83.4926,0,-81.7868	0/1:92:47,45:47:1692:45:1616:-118.035,0,-124.872	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:68:41,27:41:1468:27:968:-66.9627,0,-111.946	0/1:66:33,33:33:1184:33:1154:-84.2943,0,-87.0003	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:154:76,78:76:2724:78:2800:-205.881,0,-199.044	0/1:130:74,56:74:2644:56:2012:-142.219,0,-199.073	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:84:37,47:37:1332:47:1677:-125.93,0,-94.8959	0/1:44:33,11:33:1176:11:396:-22.7374,0,-92.9024	0/1:99:46,53:46:1652:53:1904:-141.836,0,-119.167	0/0:146:144,1:144:5165:1:36:0,-40.4109,-461.389	0/0:272:272,0:272:9733:0:0:0,-81.8802,-875.917	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/1:172:92,80:92:3304:80:2876:-207.298,0,-245.801	0/1:98:59,39:59:2112:39:1404:-97.1583,0,-160.848	0/1:86:52,34:52:1872:34:1224:-84.5785,0,-142.871	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2163	0/1:175:91,84:91:3257:84:3011:-218.54,0,-240.669	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/1:64:28,36:28:1008:36:1296:-97.678,0,-71.7704	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:121:121,0:121:4325:0:0:0,-36.4246,-389.425	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:129:70,59:70:2500:59:2116:-151.876,0,-186.42	0/1:60:30,30:30:1076:30:1076:-79.0911,0,-79.0911	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.769	0/0:117:117,0:117:4175:0:0:0,-35.2205,-375.933	0/1:88:52,36:52:1859:36:1296:-90.4533,0,-141.098	0/0:101:100,1:100:3565:1:36:0,-26.8058,-317.459	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/1:94:35,58:35:1260:58:2080:-159.115,0,-85.3499	0/0:82:82,0:82:2915:0:0:0,-24.6845,-262.586	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.03	0/1:33:18,15:18:644:15:536:-38.6408,0,-48.3566	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:121:61,60:61:2192:60:2123:-154.914,0,-161.121	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:83:53,30:53:1900:30:1080:-72.5254,0,-146.292	0/0:111:111,0:111:3975:0:0:0,-33.4143,-357.94	0/1:8:5,3:5:176:3:107:-7.57393,0,-13.7768	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:136:134,2:134:4780:2:72:0,-34.1034,-423.522	0/1:79:34,45:34:1224:45:1612:-121.589,0,-86.6841	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:100:99,1:99:3544:1:36:0,-26.5047,-315.571	0/0:149:149,0:149:5337:0:0:0,-44.8535,-480.461	0/0:62:62,0:62:2223:0:0:0,-18.6639,-200.333	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/0:199:199,0:199:7120:0:0:0,-59.905,-640.859	0/1:79:49,30:49:1756:30:1076:-73.3633,0,-134.543	0/1:188:111,76:111:3972:76:2718:-188.209,0,-301.018	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/0:77:75,2:75:2696:2:72:0,-16.3426,-236.047	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:96:96,0:96:3421:0:0:0,-28.8989,-308.103	0/0:227:226,1:226:8065:1:36:0,-64.7355,-722.272	0/1:44:20,24:20:716:24:855:-64.0249,0,-51.5224	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:40:17,23:17:603:23:819:-61.9904,0,-42.5583	0/1:112:68,44:68:2444:44:1567:-107.606,0,-186.499	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.405	0/0:85:85,0:85:3027:0:0:0,-25.5875,-272.661	0/1:74:42,32:42:1508:32:1152:-81.7139,0,-113.738	0/1:144:69,75:69:2480:75:2675:-197.647,0,-180.105	0/1:62:24,38:24:864:38:1364:-104.397,0,-59.4187	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.889	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453
chr06	21645854	.	T	C	29402.4	PASS	AB=0.496342;ABP=3.42333;AC=46;AF=0.25;AN=184;AO=1771;CIGAR=1X;DP=7449;DPB=7449;DPRA=1.0051;EPP=3848.69;EPPR=12082;GTI=0;LEN=1;MEANALT=1;MQM=59.9994;MQMR=59.9847;NS=92;NUMALT=1;ODDS=1.92623;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63094;QR=203191;RO=5678;RPL=1771;RPP=3848.69;RPPR=12099.2;RPR=0;RUN=1;SAF=0;SAP=3848.69;SAR=1771;SRF=2;SRP=12315.3;SRR=5676;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:13,18:13:468:18:638:-48.4158,0,-33.1277	0/1:61:32,29:32:1144:29:1040:-75.5515,0,-84.9067	0/1:108:60,48:60:2152:48:1712:-121.854,0,-161.436	0/0:221:221,0:221:7918:0:0:0,-66.5276,-712.64	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:116:116,0:116:4138:0:0:0,-34.9195,-372.601	0/1:155:78,77:78:2804:77:2733:-199.554,0,-205.939	0/1:142:53,89:53:1904:89:3195:-245.026,0,-128.891	0/1:108:69,39:69:2454:39:1392:-93.0672,0,-188.6	0/1:46:16,30:16:576:30:1066:-82.4035,0,-38.3276	0/0:128:128,0:128:4604:0:0:0,-38.5318,-414.522	0/1:90:48,42:48:1728:42:1508:-108.922,0,-128.713	0/1:80:39,41:39:1404:41:1472:-108.694,0,-102.577	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:79:33,46:33:1184:46:1652:-125.187,0,-83.0869	0/1:36:20,16:20:720:16:572:-40.9763,0,-54.2917	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:149:87,62:87:3098:62:2207:-154.041,0,-234.191	0/1:94:46,48:46:1656:48:1697:-124.717,0,-121.032	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/1:128:69,59:69:2472:59:2094:-150.195,0,-184.202	0/1:59:29,30:29:1044:30:1067:-78.5804,0,-76.514	0/1:72:37,35:37:1332:35:1252:-91.3109,0,-98.5082	0/0:178:178,0:178:6339:0:0:0,-53.5833,-570.6	0/0:287:287,0:287:10304:0:0:0,-86.3956,-927.28	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:329:165,164:165:5886:164:5869:-429.28,0,-430.81	0/1:85:58,27:58:2069:27:949:-60.1352,0,-160.891	0/1:136:75,61:75:2684:61:2164:-154.085,0,-200.865	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:5:3,2:3:104:2:68:-4.95256,0,-8.19766	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:213:111,102:111:3962:102:3653:-264.853,0,-292.649	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:35:26,9:26:936:9:324:-18.9698,0,-74.0234	.:.:.:.:.:.:.:.	0/0:111:111,0:111:3973:0:0:0,-33.4143,-357.759	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:117:50,67:50:1766:67:2361:-177.525,0,-123.999	0/1:65:34,31:34:1194:31:1116:-81.1847,0,-88.1943	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:84:84,0:84:2994:0:0:0,-25.2865,-269.689	0/1:105:57,48:57:2052:48:1707:-122.307,0,-153.343	0/0:93:92,1:92:3300:1:36:0,-24.3975,-293.62	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:72:34,38:34:1220:38:1340:-99.2231,0,-88.4326	0/0:69:69,0:69:2469:0:0:0,-20.7711,-222.462	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:58:23,35:23:813:35:1256:-95.8855,0,-55.9429	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:74:40,34:40:1440:34:1212:-87.1088,0,-107.622	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:93:35,58:35:1245:58:2038:-155.693,0,-84.3569	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.653	.:.:.:.:.:.:.:.	0/0:157:157,0:157:5572:0:0:0,-47.2617,-501.602	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/1:65:38,27:38:1364:27:942:-65.5237,0,-103.494	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:108:108,0:108:3858:0:0:0,-32.5112,-347.283	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:26:12,14:12:432:14:485:-36.1502,0,-31.3944	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.134	0/1:74:40,34:40:1421:34:1197:-85.7572,0,-105.909	0/1:113:55,58:55:1976:58:2080:-153.454,0,-144.098	0/0:103:103,0:103:3685:0:0:0,-31.0061,-331.851	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/0:142:142,0:142:5078:0:0:0,-42.7463,-457.161	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/0:79:79,0:79:2810:0:0:0,-23.7814,-253.137	0/0:183:183,0:183:6489:0:0:0,-55.0885,-584.093	0/1:47:24,23:24:864:23:823:-60.2448,0,-63.5629	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/1:47:17,30:17:612:30:1076:-83.0044,0,-41.265	0/1:138:70,68:70:2512:68:2428:-177.234,0,-184.79	0/1:26:9,17:9:324:17:612:-47.5867,0,-21.6791	0/0:76:76,0:76:2705:0:0:0,-22.8783,-243.606	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.291	0/1:32:17,15:17:612:15:536:-38.9419,0,-45.7805	0/1:75:34,41:34:1224:41:1464:-109.479,0,-87.8898	0/1:79:31,48:31:1112:48:1701:-129.593,0,-76.61	0/0:91:91,0:91:3255:0:0:0,-27.3937,-293.17	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.034
chr06	21811985	.	GTGGC	ATGGC,ATGGG	166501	PASS	AB=0.506762,0.486889;ABP=4.44936,8.4195;AC=143,45;AF=0.760638,0.239362;AN=188;AO=5830,1769;CIGAR=1X4M,1X3M1X;DP=7652;DPB=7652;DPRA=0,1.01594;EPP=12257.7,3698.1;EPPR=13.8677;GTI=0;LEN=1,5;MEANALT=2.01064,2.46939;MQM=59.9985,59.9457;MQMR=60;NS=94;NUMALT=2;ODDS=4.99895;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=208697,62010;QR=179;RO=5;RPL=47,17;RPP=12257.7,3698.1;RPPR=13.8677;RPR=5783,1752;RUN=1,1;SAF=5830,1769;SAP=12662.7,3844.34;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,16,23:0:0:16,23:572,802:-111.994,-65.3492,-60.5327,-46.7689,0,-39.8452	1/2:63:0,35,28:0:0:35,28:1248,996:-183.259,-81.5258,-70.9897,-102.089,0,-93.66	1/2:175:0,91,84:0:0:91,84:3240,2948:-504.343,-240.267,-212.873,-264.429,0,-239.143	1/1:163:0,163,0:0:0:163,0:5838,0:-525.529,-49.0679,0,-525.529,-49.0679,-525.529	1/1:42:0,41,0:0:0:41,0:1476,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:92:0,92,0:0:0:92,0:3293,0:-296.588,-27.6948,0,-296.588,-27.6948,-296.588	1/2:171:0,82,89:0:0:82,89:2944,3112:-493.673,-253.518,-228.834,-240.509,0,-213.717	1/2:80:0,42,37:0:0:42,37:1493,1297:-227.2,-105.532,-92.8885,-121.661,0,-110.523	1/2:89:0,42,46:0:0:42,46:1504,1615:-254.176,-131.518,-118.875,-122.739,0,-108.892	1/2:75:0,41,33:0:0:41,33:1476,1172:-215.93,-95.4936,-83.1514,-120.434,0,-110.5	1/1:75:0,75,0:0:0:75,0:2692,0:-242.524,-22.5773,0,-242.524,-22.5773,-242.524	1/2:87:0,52,34:0:0:52,34:1868,1191:-249.428,-97.0339,-81.3803,-152.523,0,-142.288	1/2:74:0,26,47:0:0:26,47:936,1646:-210.293,-133.917,-126.09,-76.3729,0,-62.2244	1/1:74:1,73,0:1:36:73,0:2624,0:-232.809,-18.6779,0,-233.11,-21.9752,-236.047	1/2:69:0,36,33:0:0:36,33:1296,1151:-199.712,-93.9591,-83.122,-106.107,0,-96.1729	1/2:35:0,19,15:0:0:19,15:680,516:-97.3881,-41.9279,-36.2083,-55.4878,0,-50.9723	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1529,-9.0309,0,-97.1529,-9.0309,-97.1529	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/2:114:0,55,59:0:0:55,59:1957,2081:-329.291,-169.798,-153.242,-159.847,0,-142.086	1/2:138:0,60,78:0:0:60,78:2156,2752:-400.332,-224.443,-206.382,-176.245,0,-152.765	1/1:42:0,41,0:0:0:41,0:1472,0:-132.514,-12.3422,0,-132.514,-12.3422,-132.514	1/2:75:0,50,25:0:0:50,25:1781,869:-216.167,-70.998,-55.9465,-145.519,0,-137.994	1/2:35:0,22,13:0:0:22,13:792,457:-102.178,-37.5497,-30.9271,-64.983,0,-61.0696	1/2:79:0,34,44:0:0:34,44:1224,1517:-223.123,-123.244,-113.009,-99.9014,0,-86.6561	1/1:213:0,212,0:0:0:212,0:7586,0:-682.465,-63.8184,0,-682.465,-63.8184,-682.465	1/1:284:0,282,0:0:0:282,0:10106,0:-909.152,-84.8905,0,-909.152,-84.8905,-909.152	1/1:35:0,34,0:0:0:34,0:1224,0:-110.136,-10.235,0,-110.136,-10.235,-110.136	1/2:199:0,118,80:0:0:118,80:4236,2786:-572.084,-226.54,-191.018,-345.537,0,-321.455	1/2:99:0,61,38:0:0:61,38:2172,1338:-286.309,-109.281,-90.918,-177.381,0,-165.942	1/2:54:0,26,27:0:0:26,27:936,940:-152.822,-76.4436,-68.6169,-76.3921,0,-68.2642	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:21:0,21,0:0:0:21,0:731,0:-66.1089,-6.32163,0,-66.1089,-6.32163,-66.1089	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:14:0,6,8:0:0:6,8:216,286:-41.3028,-23.6772,-21.8711,-17.9843,0,-15.5761	1/1:34:0,34,0:0:0:34,0:1205,0:-108.754,-10.235,0,-108.754,-10.235,-108.754	1/2:167:0,81,85:0:0:81,85:2908,2964:-478.415,-241.197,-216.813,-237.36,0,-211.772	1/1:70:0,69,0:0:0:69,0:2480,0:-223.093,-20.7711,0,-223.093,-20.7711,-223.093	1/2:77:0,39,38:0:0:39,38:1404,1329:-223.033,-108.469,-96.7286,-114.919,0,-103.48	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:87:0,86,0:0:0:86,0:3080,0:-277.147,-25.8886,0,-277.147,-25.8886,-277.147	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/2:140:0,63,74:0:0:63,74:2262,2615:-397.577,-213.055,-194.09,-184.61,0,-162.334	1/2:54:0,28,26:0:0:28,26:1004,927:-157.812,-75.9219,-67.493,-82.247,0,-74.4202	1/1:83:0,82,0:0:0:82,0:2933,0:-263.961,-24.6845,0,-263.961,-24.6845,-263.961	1/1:81:0,79,0:0:0:79,0:2825,0:-254.244,-23.7814,0,-254.244,-23.7814,-254.244	1/2:114:3,46,65:3:107:46,65:1640,2295:-310.949,-178.166,-173.041,-124.962,0,-114.118	1/1:152:0,151,0:0:0:151,0:5397,0:-485.55,-45.4555,0,-485.55,-45.4555,-485.55	1/1:61:0,60,0:0:0:60,0:2130,0:-191.615,-18.0618,0,-191.615,-18.0618,-191.615	1/2:106:0,51,55:0:0:51,55:1832,1945:-308.222,-158.77,-143.417,-149.808,0,-133.252	1/1:100:0,100,0:0:0:100,0:3584,0:-322.767,-30.103,0,-322.767,-30.103,-322.767	1/2:16:0,9,7:0:0:9,7:324,252:-47.3585,-20.9217,-18.2125,-26.7966,0,-24.6894	1/1:128:0,126,0:0:0:126,0:4520,0:-406.636,-37.9298,0,-406.636,-37.9298,-406.636	1/2:51:0,20,31:0:0:20,31:716,1089:-147.378,-88.9866,-82.966,-58.7471,0,-49.4152	1/2:20:0,16,4:0:0:16,4:572,144:-58.7471,-12.1095,-7.29302,-46.9969,0,-45.7928	1/2:153:0,97,56:0:0:97,56:3423,1991:-441.333,-162.607,-133.407,-279.081,0,-262.223	1/1:26:0,26,0:0:0:26,0:921,0:-83.2052,-7.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chr06	21812025	.	T	C	174819	PASS	AB=0.480262;ABP=18.526;AC=141;AF=0.75;AN=188;AO=7330;CIGAR=1X;DP=9732;DPB=9732;DPRA=34.871;EPP=15911.2;EPPR=5216.72;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9765;MQMR=59.9775;NS=94;NUMALT=1;ODDS=3.7186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=259848;QR=85853;RO=2401;RPL=795;RPP=9763.56;RPPR=4110.05;RPR=6535;RUN=1;SAF=794;SAP=9770.36;SAR=6536;SRF=135;SRP=4110.05;SRR=2266;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:26,26:26:932:26:925:-67.9131,0,-68.5453	0/1:136:76,60:76:2732:60:2143:-152.197,0,-205.182	0/1:134:79,55:79:2819:55:1963:-136.549,0,-213.611	1/1:265:2,263:2:68:263:9402:-839.685,-73.3152,0	1/1:67:1,66:1:36:66:2363:-209.329,-16.5707,0	1/1:31:0,31:0:0:31:1089:-98.3167,-9.33193,0	1/1:156:0,156:0:0:156:5546:-499.248,-46.9607,0	0/1:126:58,68:58:2084:68:2425:-180.575,0,-149.9	0/1:112:62,50:62:2220:50:1792:-127.847,0,-166.349	0/1:50:27,23:27:964:23:809:-58.0768,0,-72.0253	0/1:76:43,33:43:1544:33:1169:-82.6379,0,-116.375	1/1:72:0,72:0:0:72:2531:-228.038,-21.6742,0	0/1:70:41,29:41:1461:29:1016:-70.6769,0,-110.712	0/1:70:30,40:30:1068:40:1398:-105.043,0,-75.36	1/1:78:0,78:0:0:78:2751:-247.831,-23.4803,0	0/1:58:31,27:31:1116:27:964:-69.6171,0,-83.292	0/1:92:45,47:45:1604:47:1669:-122.801,0,-116.955	1/1:73:0,73:0:0:73:2589:-233.258,-21.9752,0	1/1:45:0,45:0:0:45:1599:-144.199,-13.5464,0	0/1:295:154,141:154:5527:141:5042:-365.121,0,-408.749	0/1:199:118,81:118:4232:81:2899:-201.239,0,-321.154	1/1:226:1,225:1:36:225:8003:-716.692,-64.4345,0	0/1:105:40,65:40:1432:65:2294:-175.112,0,-97.5694	0/1:167:101,66:101:3624:66:2341:-160.677,0,-274.731	0/1:55:22,33:22:792:33:1172:-89.2257,0,-55.049	1/1:514:0,514:0:0:514:18192:-1636.9,-154.729,0	1/1:147:0,147:0:0:147:5180:-466.341,-44.2514,0	1/1:41:0,41:0:0:41:1425:-128.541,-12.3422,0	0/1:385:160,225:160:5692:225:7942:-598.922,0,-396.489	0/1:116:47,69:47:1684:69:2400:-181.332,0,-116.928	0/1:122:84,38:84:3008:38:1356:-85.6148,0,-234.223	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:376:182,194:182:6431:194:6897:-507.612,0,-465.701	1/1:175:0,175:0:0:175:6217:-559.625,-52.6803,0	0/1:77:37,40:37:1324:40:1399:-103.024,0,-96.2828	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:179:0,179:0:0:179:6404:-576.448,-53.8844,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:150:82,68:82:2944:68:2424:-173.205,0,-220.039	0/1:137:73,64:73:2620:64:2258:-162.239,0,-194.806	1/1:85:0,85:0:0:85:2955:-266.156,-25.5876,0	1/1:186:0,186:0:0:186:6603:-594.356,-55.9916,0	0/1:88:51,37:51:1832:37:1324:-92.9715,0,-138.67	1/1:61:2,59:2:72:59:2069:-179.634,-11.5261,0	1/1:79:0,79:0:0:79:2819:-253.949,-23.7814,0	0/1:155:94,61:94:3380:61:2180:-149.807,0,-257.755	1/1:274:0,274:0:0:274:9658:-869.189,-82.4822,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:117:0,117:0:0:117:4106:-369.728,-35.2205,0	0/1:61:37,24:37:1276:24:848:-58.2768,0,-96.7775	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:73:45,28:45:1612:28:1000:-68.3402,0,-123.395	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:16:4,12:4:132:12:424:-33.6799,0,-7.39002	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:74:44,30:44:1580:30:1064:-73.7954,0,-120.215	1/1:94:0,94:0:0:94:3332:-300.098,-28.2968,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:273:2,271:2:72:271:9627:-859.556,-75.3445,0	1/1:184:2,182:2:72:182:6476:-576.09,-48.5528,0	0/1:62:32,30:32:1152:30:1053:-76.415,0,-85.3263	1/1:41:0,41:0:0:41:1465:-132.145,-12.3422,0	1/1:137:5,131:5:180:131:4700:-406.607,-24.7478,0	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	0/1:21:2,19:2:72:19:671:-54.3942,0,-0.515092	1/1:90:0,90:0:0:90:3221:-290.11,-27.0927,0	1/1:140:0,140:0:0:140:4948:-445.471,-42.1442,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:71:0,71:0:0:71:2493:-224.619,-21.3731,0	0/1:46:29,17:29:1040:17:603:-40.7521,0,-80.067	0/1:138:70,68:70:2512:68:2414:-175.974,0,-184.79	1/1:144:0,144:0:0:144:5118:-460.759,-43.3483,0	1/1:117:0,117:0:0:117:4104:-369.546,-35.2205,0	1/1:106:0,106:0:0:106:3787:-341.02,-31.9092,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:89:0,89:0:0:89:3179:-286.334,-26.7917,0	1/1:112:0,112:0:0:112:3970:-357.493,-33.7154,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	0/1:124:61,63:61:2175:63:2201:-161.024,0,-158.688	1/1:62:0,62:0:0:62:2171:-195.653,-18.6639,0	0/1:101:47,54:47:1692:54:1874:-138.531,0,-122.163	0/1:178:88,90:88:3136:90:3161:-231.131,0,-228.884	0/1:56:33,23:33:1180:23:819:-57.1739,0,-89.6504	1/1:91:0,91:0:0:91:3183:-286.694,-27.3937,0	1/1:69:0,69:0:0:69:2426:-218.594,-20.7711,0	0/1:38:17,21:17:608:21:721:-53.7671,0,-43.6129	0/1:59:26,33:26:932:33:1166:-87.4848,0,-66.4381	0/1:92:59,33:59:2108:33:1188:-79.5338,0,-162.294	1/1:64:0,64:0:0:64:2254:-203.12,-19.2659,0	1/1:151:0,151:0:0:151:5350:-481.634,-45.4555,0
chr06	21815183	.	C	T	86691.2	PASS	AB=0.486136;ABP=7.64648;AC=144;AF=0.765957;AN=188;AO=4144;CIGAR=1X;DP=5587;DPB=5587;DPRA=30.0269;EPP=9001.59;EPPR=3132.1;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9932;MQMR=60;NS=94;NUMALT=1;ODDS=0.852287;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148042;QR=51310;RO=1441;RPL=4144;RPP=9001.59;RPPR=3132.1;RPR=0;RUN=1;SAF=0;SAP=9001.59;SAR=4144;SRF=0;SRP=3132.1;SRR=1441;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:17,6:17:608:6:212:-12.5011,0,-48.1283	0/1:51:24,27:24:830:27:964:-71.7243,0,-59.6598	0/1:53:31,22:31:1078:22:773:-53.9349,0,-81.3697	1/1:108:0,108:0:0:108:3884:-349.753,-32.5112,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:88:41,47:41:1461:47:1688:-125.716,0,-105.293	0/1:36:22,14:22:780:14:489:-33.5018,0,-59.686	0/1:91:43,48:43:1525:48:1684:-124.448,0,-110.147	0/1:115:60,55:60:2126:55:1949:-141.066,0,-156.987	1/1:108:0,108:0:0:108:3847:-346.425,-32.5112,0	0/1:79:44,35:44:1580:35:1256:-89.5639,0,-118.71	0/1:109:61,48:61:2188:48:1724:-122.633,0,-164.373	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:71:34,37:34:1212:37:1313:-97.0966,0,-88.0132	0/1:49:23,26:23:820:26:936:-69.809,0,-59.372	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:19:11,8:11:392:8:284:-20.1838,0,-29.9005	0/1:63:30,33:30:1080:33:1143:-84.2046,0,-78.5484	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:36:21,15:21:744:15:540:-38.0995,0,-56.4472	0/1:20:14,6:14:489:6:216:-13.7699,0,-38.3183	0/1:29:11,18:11:392:18:640:-49.1994,0,-26.8902	1/1:125:0,125:0:0:125:4428:-398.691,-37.6288,0	1/1:109:0,109:0:0:109:3890:-350.291,-32.8123,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:95:45,50:45:1586:50:1796:-133.324,0,-114.429	0/1:97:37,60:37:1317:60:2125:-162.318,0,-89.6299	0/1:48:24,24:24:860:24:864:-63.6331,0,-63.2724	1/1:1:0,1:0:0:1:21:-2.09995,-0.30103,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:188:112,76:112:4020:76:2727:-189.079,0,-305.394	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:64:32,32:32:1148:32:1152:-84.7242,0,-84.3639	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:32:14,18:14:504:18:644:-48.6576,0,-36.0651	0/1:68:39,29:39:1396:29:1044:-73.8048,0,-105.469	1/1:65:0,65:0:0:65:2314:-208.518,-19.567,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:40:19,21:19:661:21:756:-56.326,0,-47.7704	1/1:93:3,90:3:104:90:3232:-281.398,-18.293,0	1/1:56:0,56:0:0:56:2001:-180.362,-16.8577,0	0/1:115:54,61:54:1932:61:2185:-162.296,0,-139.538	1/1:52:0,52:0:0:52:1859:-167.589,-15.6536,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:54:0,54:0:0:54:1939:-174.786,-16.2556,0	0/1:39:12,27:12:428:27:953:-74.344,0,-27.1186	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:99:45,54:45:1605:54:1904:-141.831,0,-114.936	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:13:2,11:2:72:11:392:-31.7067,0,-2.92333	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:65:43,21:43:1536:21:752:-48.3806,0,-118.907	1/1:117:3,114:3:108:114:4061:-355.6,-25.1453,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:205:1,203:1:36:203:7257:-649.584,-58.1717,0	1/1:89:0,89:0:0:89:3181:-286.513,-26.7917,0	0/1:59:24,35:24:849:35:1252:-95.2243,0,-58.9671	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:69:3,66:3:104:66:2328:-200.07,-11.0683,0	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:41:0,41:0:0:41:1453:-131.064,-12.3422,0	0/1:43:26,17:26:936:17:595:-40.9316,0,-71.6152	1/1:93:1,92:1:36:92:3262:-290.2,-24.3975,0	0/1:75:34,41:34:1220:41:1457:-108.847,0,-87.5296	0/1:109:60,49:60:2122:49:1760:-125.872,0,-158.433	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:87:2,85:2:72:85:3014:-264.652,-19.3529,0	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	0/1:67:39,28:39:1385:28:1004:-70.5069,0,-104.778	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	0/1:43:25,18:25:877:18:644:-45.3463,0,-66.3009	0/1:123:60,63:60:2137:63:2253:-166.004,0,-155.57	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:77:44,33:44:1580:33:1180:-83.3287,0,-119.312	0/1:179:83,96:83:2957:96:3439:-255.839,0,-212.478	0/1:63:45,18:45:1589:18:644:-39.3257,0,-124.333	1/1:92:0,92:0:0:92:3295:-296.769,-27.6948,0	1/1:121:0,121:0:0:121:4344:-391.134,-36.4246,0
chr06	22126756	.	C	G	11422.4	PASS	AB=0.474763;ABP=17.0392;AC=47;AF=0.252688;AN=186;AO=1212;CIGAR=1X;DP=5842;DPB=5842;DPRA=0.863969;EPP=2626.16;EPPR=9963.71;GTI=3;LEN=1;MEANALT=1.05882;MQM=29.0404;MQMR=59.1099;NS=93;NUMALT=1;ODDS=0.216145;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43325;QR=164338;RO=4623;RPL=1;RPP=2626.16;RPPR=9963.71;RPR=1211;RUN=1;SAF=1212;SAP=2634.83;SAR=0;SRF=4623;SRP=10041.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:13,7:13:460:7:248:-11.9453,0,-35.6918	0/1:127:68,59:68:2428:59:2112:-111.587,0,-180.458	0/1:72:42,30:42:1461:30:1076:-54.5334,0,-110.009	0/0:153:153,0:153:5472:0:0:0,-46.0576,-492.35	0/0:38:38,0:38:1340:0:0:0,-11.4391,-120.814	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.906	0/0:106:106,0:106:3772:0:0:0,-31.9092,-339.6	0/1:89:48,41:48:1696:41:1460:-76.8331,0,-126.113	0/1:35:19,16:19:676:16:576:-30.2133,0,-50.5268	0/1:40:13,27:13:460:27:960:-56.5293,0,-29.4935	0/1:47:22,25:22:771:25:900:-49.4521,0,-55.5619	0/0:60:60,0:60:2096:0:0:0,-18.0618,-188.074	0/1:34:15,19:15:518:19:680:-38.0433,0,-36.5522	0/1:55:28,27:28:983:27:951:-51.7127,0,-72.2213	0/0:46:46,0:46:1656:0:0:0,-13.8474,-148.807	0/1:34:18,16:18:635:16:572:-30.5824,0,-47.2373	0/1:37:25,12:25:883:12:432:-19.6117,0,-68.6412	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.373	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.607	0/1:142:98,44:98:3504:44:1576:-68.7638,0,-271.551	0/1:74:30,44:30:1068:44:1580:-90.0161,0,-74.1356	0/0:92:92,0:92:3288:0:0:0,-27.6948,-295.505	0/1:85:32,53:32:1144:53:1881:-108.16,0,-77.6319	0/1:51:22,29:22:758:29:1036:-58.8117,0,-52.441	0/1:42:32,10:32:1136:10:360:-13.0286,0,-89.8294	0/0:163:163,0:163:5764:0:0:0,-49.0679,-518.24	0/0:125:125,0:125:4452:0:0:0,-37.6287,-400.009	0/0:21:21,0:21:756:0:0:0,-6.32163,-67.3887	0/1:196:107,87:107:3824:87:3101:-161.747,0,-284.672	0/1:91:56,35:56:2000:35:1256:-61.5088,0,-152.847	0/1:71:45,26:45:1596:26:936:-44.6105,0,-122.541	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:7,0:7:248:0:0:0,-2.10721,-22.2994	.:.:.:.:.:.:.:.	0/1:7:2,5:2:72:5:180:-10.8698,0,-4.72951	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:118:65,53:65:2303:53:1900:-98.995,0,-172.004	0/0:85:85,0:85:3032:0:0:0,-25.5875,-272.992	0/1:42:18,24:18:640:24:851:-48.1849,0,-45.2828	0/1:4:3,1:3:108:1:36:-1.61696,0,-8.87105	0/0:118:118,0:118:4180:0:0:0,-35.5215,-375.672	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.0718	0/1:70:39,31:39:1388:31:1101:-57.2096,0,-103.795	0/1:42:19,23:19:676:23:824:-45.6822,0,-48.4634	0/0:46:46,0:46:1632:0:0:0,-13.8474,-146.791	0/0:63:63,0:63:2248:0:0:0,-18.9649,-201.995	0/1:58:25,33:25:875:33:1180:-66.1479,0,-61.1276	0/0:74:73,0:73:2596:0:0:0,-21.9752,-233.547	0/0:73:72,1:72:2560:1:36:0,-19.1541,-227.805	0/1:136:58,78:58:2072:78:2800:-156.896,0,-145.753	0/0:115:114,1:114:4056:1:36:0,-31.7974,-362.355	0/1:9:4,5:4:140:5:180:-10.2677,0,-10.2353	0/0:116:116,0:116:4160:0:0:0,-34.9195,-373.619	0/1:46:19,27:19:684:27:968:-54.899,0,-47.9998	0/1:2:1,1:1:36:1:36:-2.21902,0,-2.99621	0/1:91:44,47:44:1572:47:1665:-90.8089,0,-113.63	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.5203	0/1:7:4,3:4:144:3:108:-5.79182,0,-11.2017	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.05282	0/1:52:27,25:27:960:25:900:-48.1029,0,-70.5521	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.819	1/1:2:0,2:0:0:2:72:-5.36005,-0.60206,0	0/0:143:143,0:143:5100:0:0:0,-43.0473,-459.048	0/0:107:107,0:107:3796:0:0:0,-32.2102,-341.734	0/1:42:22,20:22:788:20:716:-38.3302,0,-58.5969	0/0:86:86,0:86:3052:0:0:0,-25.8886,-274.743	0/0:101:99,2:99:3503:2:72:0,-25.044,-309.987	0/0:88:86,1:86:3050:1:36:0,-23.6894,-271.159	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.378	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.704	0/0:58:58,0:58:2070:0:0:0,-17.4597,-186.531	0/1:10:3,7:3:104:7:252:-15.7528,0,-6.69251	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.093	0/1:32:15,17:15:532:17:608:-33.7235,0,-38.5494	0/1:83:47,36:47:1684:36:1296:-66.6996,0,-126.475	0/0:101:100,0:100:3564:0:0:0,-30.103,-320.133	0/0:80:79,0:79:2828:0:0:0,-23.7814,-254.366	0/0:75:75,0:75:2656:0:0:0,-22.5772,-239.196	0/1:5:1,4:1:36:4:144:-8.93285,0,-2.09312	0/0:75:75,0:75:2668:0:0:0,-22.5772,-239.761	0/0:115:115,0:115:4099:0:0:0,-34.6184,-368.672	0/0:112:112,0:112:3996:0:0:0,-33.7154,-359.62	0/1:62:37,25:37:1311:25:896:-45.0046,0,-99.5697	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.383	0/1:39:21,18:21:747:18:648:-33.7613,0,-55.8141	0/1:79:44,35:44:1567:35:1252:-65.0333,0,-117.529	0/1:19:11,8:11:392:8:284:-14.7855,0,-29.889	0/0:53:53,0:53:1854:0:0:0,-15.9546,-166.686	0/0:35:35,0:35:1225:0:0:0,-10.536,-110.48	0/1:39:21,18:21:735:18:644:-33.8946,0,-54.611	0/1:70:37,33:37:1302:33:1184:-62.7792,0,-96.3574	0/1:30:10,20:10:360:20:691:-41.1326,0,-23.6681	0/0:76:75,1:75:2654:1:36:0,-20.0572,-235.891	0/0:64:64,0:64:2284:0:0:0,-19.2659,-204.999
chr06	22126796	.	C	A	10465.8	PASS	AB=0.467427;ABP=25.6445;AC=47;AF=0.252688;AN=186;AO=1157;CIGAR=1X;DP=5710;DPB=5710;DPRA=0.857048;EPP=2515.4;EPPR=9863.67;GTI=4;LEN=1;MEANALT=1.03846;MQM=29.0346;MQMR=59.2102;NS=93;NUMALT=1;ODDS=0.515353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40566;QR=158598;RO=4549;RPL=1157;RPP=2515.4;RPPR=9820.33;RPR=0;RUN=1;SAF=1157;SAP=2515.4;SAR=0;SRF=4544;SRP=9837.66;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:12,7:12:414:7:244:-12.1574,0,-31.866	0/1:123:67,56:67:2383:56:1956:-103.484,0,-177.619	0/1:72:41,31:41:1397:31:1085:-56.1696,0,-104.322	0/0:151:151,0:151:5306:0:0:0,-45.4555,-477.414	0/0:37:37,0:37:1290:0:0:0,-11.1381,-116.363	0/0:32:32,0:32:1114:0:0:0,-9.63296,-100.555	0/0:102:102,0:102:3585:0:0:0,-30.7051,-322.781	0/1:83:45,38:45:1565:38:1348:-70.9343,0,-116.147	0/1:32:17,15:17:593:15:512:-27.6321,0,-44.0618	0/1:40:12,28:12:411:28:973:-57.8635,0,-25.2065	0/1:45:22,22:22:770:22:776:-42.26,0,-56.089	0/0:63:63,0:63:2183:0:0:0,-18.9649,-196.027	0/1:32:14,18:14:476:18:624:-35.6924,0,-33.3733	0/1:53:27,26:27:922:26:915:-49.7757,0,-67.3332	0/0:44:44,0:44:1540:0:0:0,-13.2453,-138.562	0/1:34:18,16:18:631:16:556:-30.2296,0,-46.876	0/1:37:25,12:25:870:12:424:-19.4349,0,-67.4683	0/0:35:35,0:35:1210:0:0:0,-10.536,-109.196	0/0:21:21,0:21:698:0:0:0,-6.32163,-63.0773	0/1:139:98,39:98:3465:39:1384:-57.2154,0,-269.269	0/1:72:32,40:32:1139:40:1389:-78.6825,0,-81.1075	0/0:89:89,0:89:3120:0:0:0,-26.7917,-280.348	0/1:78:30,48:30:1035:48:1657:-96.805,0,-69.9252	0/1:48:21,27:21:716:27:943:-53.644,0,-49.8537	0/1:41:31,10:31:1054:10:356:-13.878,0,-82.8146	0/0:160:160,0:160:5641:0:0:0,-48.1648,-507.301	0/0:126:126,0:126:4419:0:0:0,-37.9298,-397.401	0/0:18:18,0:18:597:0:0:0,-5.41854,-53.6055	0/1:191:110,81:110:3845:81:2837:-145.92,0,-288.055	0/1:86:55,31:55:1944:31:1088:-52.4863,0,-149.294	0/1:69:44,25:44:1561:25:888:-42.7214,0,-119.991	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.016	.:.:.:.:.:.:.:.	0/1:7:2,5:2:68:5:176:-10.7802,0,-4.3505	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:116:63,53:63:2164:53:1850:-98.2938,0,-160.099	0/0:82:82,0:82:2857:0:0:0,-24.6845,-257.358	0/1:41:17,24:17:595:24:826:-47.8327,0,-41.5334	0/1:4:3,1:3:108:1:36:-1.61696,0,-8.87105	0/0:118:117,0:117:4128:0:0:0,-35.2205,-371.195	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.5993	0/1:68:38,30:38:1304:30:1047:-55.1527,0,-96.8898	0/1:42:20,22:20:678:22:780:-42.2932,0,-48.6871	0/0:45:45,0:45:1568:0:0:0,-13.5463,-140.85	0/0:63:63,0:63:2180:0:0:0,-18.9649,-196.002	0/1:55:25,30:25:883:30:1044:-58.6212,0,-62.9865	0/0:69:69,0:69:2424:0:0:0,-20.7711,-217.8	0/0:72:71,1:71:2496:1:36:0,-18.8531,-222.045	0/1:135:59,76:59:2060:76:2663:-150.178,0,-144.972	0/0:117:116,1:116:3976:1:36:0,-32.3994,-355.161	0/1:9:4,5:4:144:5:180:-10.2677,0,-10.6043	0/0:111:111,0:111:3890:0:0:0,-33.4143,-349.407	0/1:44:19,25:19:658:25:878:-49.8207,0,-46.2779	0/1:2:1,1:1:36:1:36:-2.21902,0,-2.99621	0/1:83:41,42:41:1426:42:1483:-81.1937,0,-102.877	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.3049	0/1:7:4,3:4:144:3:108:-5.79182,0,-11.2017	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:50:24,26:24:847:26:919:-50.9488,0,-61.058	0/0:68:68,0:68:2340:0:0:0,-20.47,-210.834	1/1:2:0,2:0:0:2:72:-5.36005,-0.60206,0	0/0:142:142,0:142:4923:0:0:0,-42.7463,-443.182	0/0:105:105,0:105:3719:0:0:0,-31.6081,-334.701	0/1:39:20,19:20:692:19:667:-36.7332,0,-50.8584	0/0:84:84,0:84:2937:0:0:0,-25.2865,-264.397	0/0:99:97,2:97:3356:2:72:0,-24.4419,-296.857	0/0:86:86,0:86:2987:0:0:0,-25.8886,-268.352	0/0:35:34,1:34:1173:1:32:0,-7.38752,-102.721	0/0:61:61,0:61:2134:0:0:0,-18.3628,-192.285	0/0:56:56,0:56:1933:0:0:0,-16.8577,-174.202	0/1:10:4,6:4:144:6:216:-12.5056,0,-10.3009	0/0:78:78,0:78:2677:0:0:0,-23.4803,-241.145	0/1:32:15,17:15:531:17:608:-33.7235,0,-38.4582	0/1:78:44,34:44:1518:34:1204:-62.6874,0,-113.249	0/0:98:98,0:98:3459:0:0:0,-29.5009,-311.132	0/0:80:80,0:80:2812:0:0:0,-24.0824,-253.293	0/0:74:74,0:74:2566:0:0:0,-22.2762,-231.143	0/1:5:1,4:1:32:4:140:-8.84282,0,-1.69416	0/0:71:71,0:71:2462:0:0:0,-21.3731,-221.394	0/0:117:116,1:116:4056:1:32:0,-32.0273,-361.532	0/0:114:114,0:114:4005:0:0:0,-34.3174,-360.526	0/1:62:38,24:38:1334:24:840:-42.0256,0,-101.637	0/0:49:49,0:49:1711:0:0:0,-14.7505,-154.107	0/1:36:18,18:18:612:18:636:-34.4,0,-44.5605	0/1:79:44,35:44:1513:35:1236:-64.6818,0,-112.66	0/1:19:11,8:11:349:8:272:-14.5191,0,-25.9885	0/0:50:50,0:50:1724:0:0:0,-15.0515,-155.063	0/0:31:31,0:31:1046:0:0:0,-9.33193,-94.3402	0/1:37:20,17:20:689:17:600:-32.1867,0,-51.1844	0/1:71:38,33:38:1301:33:1164:-62.012,0,-95.9827	0/1:31:11,20:11:360:20:686:-40.6449,0,-23.3375	0/0:76:75,1:75:2660:1:36:0,-20.0572,-235.654	0/0:64:64,0:64:2220:0:0:0,-19.2659,-199.396
chr06	22149663	.	G	A	21930.7	PASS	AB=0.518459;ABP=10.3856;AC=46;AF=0.244681;AN=188;AO=1298;CIGAR=1X;DP=5121;DPB=5121;DPRA=1.09575;EPP=2821.58;EPPR=8295.86;GTI=0;LEN=1;MEANALT=1.08163;MQM=59.9884;MQMR=59.9997;NS=94;NUMALT=1;ODDS=5.62122;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46502;QR=136777;RO=3819;RPL=1298;RPP=2821.58;RPPR=8295.86;RPR=0;RUN=1;SAF=0;SAP=2821.58;SAR=1298;SRF=0;SRP=8295.86;SRR=3819;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:9,17:9:320:17:612:-47.5867,0,-21.3156	0/1:34:21,13:21:756:13:468:-32.2246,0,-58.1322	0/1:96:56,40:56:2008:40:1432:-100.279,0,-152.094	0/0:151:148,3:148:5304:3:108:0,-35.3804,-467.419	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:87:39,48:39:1396:48:1720:-128.896,0,-99.7495	0/1:41:20,21:20:712:21:756:-56.025,0,-52.0644	0/1:43:30,13:30:1076:13:464:-29.1532,0,-84.2086	0/1:66:36,30:36:1292:30:1076:-77.2849,0,-96.7158	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.937	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	0/0:54:53,1:53:1896:1:36:0,-12.6573,-167.32	0/1:42:19,23:19:680:23:820:-61.4793,0,-48.8859	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:105:43,61:43:1540:61:2176:-164.479,0,-107.265	0/1:97:55,41:55:1972:41:1458:-102.256,0,-148.496	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:91:35,55:35:1256:55:1968:-149.943,0,-85.8928	0/1:38:11,27:11:392:27:972:-76.3588,0,-24.1809	0/1:49:32,17:32:1133:17:612:-40.663,0,-87.5262	0/0:97:97,0:97:3492:0:0:0,-29.1999,-314.489	0/0:158:158,0:158:5668:0:0:0,-47.5627,-510.238	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/1:155:73,82:73:2612:82:2932:-217.455,0,-188.668	0/1:65:27,38:27:972:38:1356:-102.774,0,-68.231	0/1:68:32,36:32:1148:36:1288:-95.7535,0,-83.1598	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:146:70,76:70:2504:76:2728:-201.812,0,-181.662	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.4	0/1:47:29,18:29:1036:18:648:-44.5035,0,-79.4055	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:89:42,47:42:1512:47:1688:-125.415,0,-109.583	0/1:60:37,23:37:1328:23:824:-56.4215,0,-101.76	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:34:17,17:17:604:17:612:-45.1738,0,-44.4556	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:85:24,61:24:856:61:2177:-170.607,0,-51.7736	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:54:20,34:20:720:34:1220:-93.8512,0,-48.8732	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:95:47,48:47:1688:48:1719:-126.398,0,-123.609	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:33:19,14:19:676:14:504:-35.7641,0,-51.234	0/0:89:87,2:87:3116:2:72:0,-19.9549,-273.83	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:52:21,31:21:756:31:1108:-84.3768,0,-52.7137	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.149	0/1:51:27,24:27:972:24:864:-62.73,0,-72.4454	0/1:74:27,47:27:972:47:1680:-129.211,0,-65.5217	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/1:58:33,25:33:1188:25:900:-63.8613,0,-89.7689	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:25:10,15:10:360:15:536:-41.0491,0,-25.2186	0/1:95:44,50:44:1572:50:1792:-132.901,0,-113.115	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.271	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:51:32,19:32:1148:19:684:-46.5378,0,-88.2773	0/1:94:46,48:46:1648:48:1720:-126.789,0,-120.312	0/1:49:15,34:15:540:34:1212:-94.6359,0,-34.1861	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211
chr06	22432744	.	T	A	143812	PASS	AB=0.531572;ABP=34.1351;AC=139;AF=0.739362;AN=188;AO=6702;CIGAR=1X;DP=8401;DPB=8401;DPRA=15.0448;EPP=14486.8;EPPR=3683.66;GTI=4;LEN=1;MEANALT=1.04301;MQM=59.9806;MQMR=60;NS=94;NUMALT=1;ODDS=2.28855;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=239484;QR=58816;RO=1695;RPL=8;RPP=14486.8;RPPR=3683.66;RPR=6694;RUN=1;SAF=0;SAP=14556.2;SAR=6702;SRF=0;SRP=3683.66;SRR=1695;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:10,15:10:360:15:536:-41.0491,0,-25.2186	0/1:196:100,96:100:3412:96:3452:-251.881,0,-248.292	0/1:89:47,42:47:1644:42:1508:-109.223,0,-121.456	1/1:212:0,212:0:0:212:7600:-684.037,-63.8184,0	1/1:59:0,59:0:0:59:2111:-190.259,-17.7608,0	1/1:67:0,67:0:0:67:2397:-215.986,-20.169,0	1/1:122:0,122:0:0:122:4348:-391.494,-36.7257,0	0/1:160:65,94:65:2288:94:3346:-253.133,0,-157.96	0/1:74:37,37:37:1259:37:1319:-96.7268,0,-91.3275	0/1:125:61,64:61:2142:64:2289:-168.642,0,-155.416	0/1:42:22,20:22:772:20:720:-52.4855,0,-57.158	1/1:68:0,68:0:0:68:2419:-217.966,-20.47,0	0/1:38:20,18:20:666:18:636:-46.1289,0,-48.8113	0/1:71:31,40:31:1085:40:1432:-107.804,0,-76.5838	1/1:58:0,58:0:0:58:2055:-185.22,-17.4597,0	0/1:53:23,30:23:807:30:1076:-81.1983,0,-56.9946	0/1:48:14,34:14:457:34:1208:-94.5766,0,-26.9914	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:175:86,89:86:2954:89:3188:-234.463,0,-213.411	0/1:98:47,51:47:1653:51:1832:-135.66,0,-119.555	1/1:123:0,123:0:0:123:4410:-397.072,-37.0267,0	0/1:28:8,20:8:272:20:716:-56.3389,0,-16.3824	0/1:105:38,66:38:1340:66:2376:-182.43,0,-89.2333	0/1:36:19,17:19:676:17:603:-43.7624,0,-50.3309	1/1:357:3,354:3:108:354:12644:-1127.71,-97.3925,0	1/1:198:0,198:0:0:198:7058:-635.282,-59.6039,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:130:58,72:58:2003:72:2579:-193.169,0,-141.405	0/1:131:64,66:64:2204:66:2376:-174.638,0,-159.166	0/1:113:52,61:52:1818:61:2157:-160.38,0,-129.881	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:159:80,79:80:2806:79:2807:-205.004,0,-204.916	1/1:212:0,212:0:0:212:7572:-681.519,-63.8184,0	0/1:58:29,29:29:1020:29:1044:-76.8151,0,-74.6524	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:137:0,137:0:0:137:4897:-440.881,-41.2411,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:88:42,46:42:1497:46:1648:-122.118,0,-108.532	0/1:65:37,28:37:1320:28:995:-70.2977,0,-99.535	0/1:62:29,33:29:1001:33:1184:-88.2045,0,-71.7342	1/1:170:0,170:0:0:170:6076:-546.869,-51.1751,0	0/1:114:64,50:64:2231:50:1780:-126.164,0,-166.733	1/1:177:0,177:0:0:177:6343:-570.959,-53.2823,0	1/1:107:0,107:0:0:107:3825:-344.445,-32.2102,0	0/1:134:73,61:73:2574:61:2164:-154.687,0,-191.57	1/1:187:0,187:0:0:187:6675:-600.827,-56.2926,0	0/1:8:4,4:4:144:4:130:-9.61191,0,-10.9054	1/1:117:0,117:0:0:117:4192:-377.461,-35.2205,0	0/1:42:21,21:21:725:21:752:-55.363,0,-52.9245	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:117:43,74:43:1471:74:2656:-204.065,0,-97.4567	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:66:20,46:20:659:46:1632:-127.301,0,-39.7486	1/1:91:0,91:0:0:91:3235:-291.3,-27.3937,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:220:0,220:0:0:220:7850:-706.528,-66.2266,0	1/1:174:0,174:0:0:174:6256:-563.131,-52.3792,0	0/1:115:47,68:47:1610:68:2417:-183.167,0,-110.563	1/1:71:1,70:1:32:70:2516:-223.492,-18.1738,0	1/1:179:1,178:1:36:178:6352:-568.172,-50.2861,0	1/1:183:1,182:1:32:182:6485:-580.536,-51.8892,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:85:0,85:0:0:85:3037:-273.559,-25.5876,0	0/1:22:13,9:13:445:9:324:-22.8832,0,-33.7527	0/1:90:38,52:38:1345:52:1853:-139.956,0,-94.2555	0/1:55:23,32:23:809:32:1135:-85.9014,0,-56.5717	0/1:168:86,82:86:2938:82:2921:-212.551,0,-214.08	1/1:169:0,169:0:0:169:6050:-544.602,-50.8741,0	1/1:134:0,134:0:0:134:4792:-431.434,-40.338,0	1/1:123:2,121:2:57:121:4333:-384.73,-31.6134,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:110:0,110:0:0:110:3931:-353.974,-33.1133,0	1/1:115:0,115:0:0:115:4094:-368.647,-34.6185,0	1/1:197:0,196:0:0:196:6999:-629.612,-59.0019,0	0/1:72:33,39:33:1153:39:1377:-102.553,0,-82.4	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:67:27,40:27:939:40:1427:-108.558,0,-64.6537	0/1:117:55,62:55:1853:62:2228:-165.563,0,-131.821	0/1:40:18,22:18:636:22:788:-59.2036,0,-45.5268	1/1:58:0,58:0:0:58:2079:-187.38,-17.4597,0	1/1:56:0,56:0:0:56:2002:-180.453,-16.8577,0	0/1:44:23,21:23:782:21:752:-54.7609,0,-57.4456	0/1:73:36,37:36:1267:37:1291:-94.5121,0,-92.3567	0/1:52:26,26:26:878:26:928:-68.1847,0,-63.6732	1/1:64:0,64:0:0:64:2290:-206.361,-19.2659,0	1/1:72:0,72:0:0:72:2563:-230.919,-21.6742,0
chr06	22432795	.	G	A	85172.1	PASS	AB=0.510987;ABP=5.63463;AC=138;AF=0.734043;AN=188;AO=4080;CIGAR=1X;DP=5316;DPB=5316;DPRA=57.1505;EPP=8862.62;EPPR=2684.78;GTI=4;LEN=1;MEANALT=1.01075;MQM=53.4522;MQMR=59.4858;NS=94;NUMALT=1;ODDS=0.443734;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145487;QR=44006;RO=1235;RPL=0;RPP=8862.62;RPPR=2684.78;RPR=4080;RUN=1;SAF=4080;SAP=8862.62;SAR=0;SRF=1235;SRP=2684.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:9,2:9:324:2:72:-3.5082,0,-26.1863	0/1:100:55,45:55:1934:45:1604:-113.279,0,-144.134	0/1:58:36,22:36:1288:22:777:-52.3253,0,-98.7557	1/1:136:0,136:0:0:136:4858:-436.08,-40.9401,0	1/1:22:0,22:0:0:22:792:-71.3609,-6.62266,0	1/1:33:0,33:0:0:33:1188:-106.455,-9.93399,0	1/1:88:0,88:0:0:88:3160:-283.902,-26.4906,0	0/1:46:16,30:16:572:30:1080:-83.3949,0,-37.966	0/1:53:23,30:23:801:30:1061:-79.5092,0,-56.4273	0/1:87:51,36:51:1805:36:1284:-88.6002,0,-136.534	0/1:31:15,16:15:521:16:576:-42.5942,0,-37.8773	1/1:50:0,50:0:0:50:1796:-160.985,-15.0515,0	0/1:43:19,24:19:680:24:864:-64.6166,0,-48.5849	0/1:60:28,32:28:1004:32:1129:-83.4246,0,-72.6048	1/1:54:0,54:0:0:54:1932:-173.346,-16.2556,0	0/1:34:13,21:13:464:21:756:-57.8935,0,-31.8625	0/1:73:39,34:39:1404:34:1224:-87.9484,0,-104.674	1/1:51:0,51:0:0:51:1813:-162.119,-15.3525,0	1/1:22:0,22:0:0:22:784:-70.7114,-6.62266,0	0/1:81:54,27:54:1925:27:942:-60.6453,0,-149.116	0/1:22:10,12:10:360:12:432:-32.3614,0,-26.1216	1/1:60:0,60:0:0:60:2150:-193.09,-18.0618,0	0/1:35:9,26:9:320:26:936:-73.8494,0,-18.6063	0/1:71:36,35:36:1288:35:1260:-91.8173,0,-94.8491	0/1:49:22,27:22:792:27:968:-70.9527,0,-56.8424	1/1:161:2,158:2:72:158:5597:-495.644,-41.7469,0	1/1:90:0,90:0:0:90:3210:-287.56,-27.0927,0	1/1:22:0,22:0:0:22:792:-71.3347,-6.62266,0	0/1:126:81,45:81:2840:45:1616:-107.637,0,-217.898	0/1:60:34,26:34:1216:26:936:-66.203,0,-91.6788	0/1:69:36,33:36:1277:33:1165:-84.1166,0,-94.3668	1/1:5:0,5:0:0:5:165:-15.1546,-1.50515,0	1/1:12:0,12:0:0:12:426:-38.4943,-3.61236,0	0/1:9:4,5:4:144:5:180:-13.8012,0,-10.6043	0/1:5:1,4:1:36:4:144:-11.775,0,-2.09312	1/1:5:0,5:0:0:5:176:-16.1484,-1.50515,0	0/1:111:46,65:46:1656:65:2321:-175.577,0,-115.909	1/1:52:0,52:0:0:52:1826:-163.32,-15.6536,0	0/1:45:20,25:20:716:25:900:-67.5646,0,-51.2214	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:66:0,66:0:0:66:2347:-209.938,-19.868,0	1/1:34:0,34:0:0:34:1209:-108.846,-10.235,0	0/1:77:40,37:40:1406:37:1302:-93.5602,0,-103.641	0/1:38:25,13:25:896:13:468:-30.9032,0,-69.5142	0/1:40:13,27:13:468:27:972:-75.4379,0,-30.4161	1/1:54:0,54:0:0:54:1921:-172.947,-16.2556,0	0/1:38:20,18:20:701:18:648:-45.7783,0,-51.9726	1/1:75:0,75:0:0:75:2684:-241.272,-22.5773,0	1/1:84:0,84:0:0:84:2982:-267.588,-25.2865,0	0/1:172:53,119:53:1904:119:4186:-323.277,0,-119.76	1/1:98:0,98:0:0:98:3505:-314.53,-29.5009,0	0/1:6:4,2:4:144:2:72:-5.02561,0,-11.5074	1/1:79:0,79:0:0:79:2821:-252.256,-23.7814,0	0/1:36:14,22:14:489:22:792:-60.6973,0,-33.0998	0/1:15:6,9:6:216:9:324:-24.7325,0,-15.2668	0/1:67:35,32:35:1260:32:1118:-80.1785,0,-92.515	1/1:18:0,18:0:0:18:648:-57.8529,-5.41854,0	0/1:4:1,3:1:36:3:108:-8.86823,0,-2.39415	1/1:16:0,16:0:0:16:576:-52.159,-4.81648,0	0/1:56:27,29:27:972:29:1044:-77.1304,0,-70.9321	1/1:93:0,93:0:0:93:3325:-298.104,-27.9958,0	0/1:4:2,2:2:72:2:68:-5.25014,0,-5.6326	1/1:85:0,85:0:0:85:2973:-266.678,-25.5876,0	1/1:168:3,165:3:108:165:5875:-514.922,-40.4979,0	0/1:67:28,39:28:993:39:1389:-104.738,0,-69.5089	1/1:57:0,57:0:0:57:2036:-182.671,-17.1587,0	1/1:85:3,82:3:108:82:2903:-250.735,-15.5148,0	1/1:88:0,88:0:0:88:3164:-283.832,-26.4906,0	1/1:22:0,22:0:0:22:792:-71.0119,-6.62266,0	1/1:34:0,34:0:0:34:1220:-109.27,-10.235,0	1/1:64:0,64:0:0:64:2285:-205.512,-19.2659,0	0/1:15:7,8:7:248:8:284:-21.353,0,-18.1464	0/1:68:32,36:32:1136:36:1271:-93.4783,0,-82.0534	0/1:78:43,35:43:1532:35:1207:-84.429,0,-114.673	0/1:103:52,51:52:1872:51:1828:-132.588,0,-137.516	1/1:81:0,81:0:0:81:2901:-260.288,-24.3834,0	1/1:75:0,75:0:0:75:2680:-239.369,-22.5773,0	1/1:116:2,114:2:72:114:4070:-357.882,-28.0914,0	0/1:5:3,2:3:108:2:72:-5.31438,0,-8.56158	1/1:48:0,48:0:0:48:1709:-153.349,-14.4494,0	1/1:58:0,58:0:0:58:2088:-186.088,-17.4597,0	1/1:108:0,108:0:0:108:3842:-344.389,-32.5112,0	0/1:56:18,38:18:644:38:1353:-105.061,0,-41.4168	1/1:49:0,49:0:0:49:1764:-158.528,-14.7505,0	0/1:52:26,26:26:936:26:936:-68.1968,0,-68.9026	0/1:57:30,27:30:1065:27:972:-70.5636,0,-78.9974	0/1:20:11,9:11:396:9:313:-22.3937,0,-29.9169	1/1:59:0,59:0:0:59:2099:-187.804,-17.7608,0	1/1:40:0,40:0:0:40:1432:-127.326,-12.0412,0	0/1:30:17,13:17:612:13:464:-32.9273,0,-46.3779	0/1:87:41,46:41:1472:46:1637:-120.58,0,-106.547	0/1:33:19,14:19:665:14:504:-35.6429,0,-50.2388	1/1:35:0,35:0:0:35:1256:-113.108,-10.5361,0	1/1:60:0,60:0:0:60:2156:-193.175,-18.0618,0
chr06	22432927	.	C	A	14439.3	PASS	AB=0.389677;ABP=271.321;AC=48;AF=0.258065;AN=186;AO=1001;CIGAR=1X;DP=5399;DPB=5399;DPRA=1.04451;EPP=2167.98;EPPR=9453.46;GTI=3;LEN=1;MEANALT=1.06897;MQM=59.973;MQMR=60;NS=93;NUMALT=1;ODDS=0.0152444;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35653;QR=156677;RO=4392;RPL=1000;RPP=2167.98;RPPR=9453.46;RPR=1;RUN=1;SAF=0;SAP=2176.65;SAR=1001;SRF=0;SRP=9540.12;SRR=4392;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:49:25,24:25:900:24:851:-62.159,0,-66.5705	0/1:132:77,55:77:2747:55:1943:-135.41,0,-207.736	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/0:23:22,1:22:777:1:36:0,-3.32541,-66.6521	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:59:58,1:58:2059:1:33:0,-14.7617,-182.582	0/1:83:58,25:58:2060:25:874:-53.9892,0,-160.686	0/1:65:33,32:33:1180:32:1134:-82.8003,0,-86.9411	0/1:41:30,11:30:1051:11:396:-23.6405,0,-82.5574	0/1:82:57,25:57:2022:25:891:-55.8243,0,-157.567	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:66:48,18:48:1708:18:644:-38.4226,0,-134.138	0/1:54:36,18:36:1276:18:640:-41.6737,0,-98.8874	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:39:25,14:25:892:14:500:-33.596,0,-68.8595	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:82:47,35:47:1664:35:1247:-87.8496,0,-125.36	0/1:103:64,39:64:2279:39:1396:-94.9332,0,-174.366	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/1:48:32,16:32:1148:16:561:-36.3677,0,-89.1804	0/1:34:22,12:22:780:12:424:-28.2614,0,-60.288	0/1:38:22,16:22:784:16:563:-39.56,0,-59.4448	0/0:134:134,0:134:4753:0:0:0,-40.338,-427.931	0/0:79:79,0:79:2816:0:0:0,-23.7814,-253.68	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:115:60,55:60:2148:55:1966:-142.596,0,-158.969	0/1:71:40,31:40:1415:31:1089:-76.9442,0,-106.273	0/1:43:22,21:22:788:21:748:-54.701,0,-58.3005	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:112:65,47:65:2315:47:1688:-118.492,0,-174.895	0/0:115:113,1:113:4020:1:34:0,-31.2684,-358.58	0/1:66:51,15:51:1807:15:540:-29.0686,0,-143.043	.:.:.:.:.:.:.:.	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/1:63:42,21:42:1508:21:756:-49.4023,0,-117.05	0/1:39:22,17:22:792:17:599:-42.4979,0,-59.8655	0/1:30:18,12:18:644:12:432:-30.1903,0,-49.2597	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:59:25,34:25:896:34:1211:-91.5347,0,-63.1996	0/0:84:84,0:84:2988:0:0:0,-25.2865,-269.151	0/0:71:70,1:70:2489:1:36:0,-17.7749,-220.664	0/1:72:50,22:50:1796:22:788:-49.5706,0,-140.248	0/0:69:67,2:67:2363:2:72:0,-13.9343,-206.087	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:61:61,0:61:2162:0:0:0,-18.3628,-194.843	0/1:34:13,21:13:468:21:748:-57.4103,0,-32.2246	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:75:40,35:40:1432:35:1252:-90.4078,0,-106.6	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2068	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:40:25,15:25:896:15:536:-36.5336,0,-68.9192	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:127:125,1:125:4471:1:36:0,-34.6164,-399.035	0/1:50:33,17:33:1176:17:604:-39.6391,0,-91.0963	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:114:112,2:112:3977:2:72:0,-27.4807,-351.285	0/0:108:106,1:106:3808:1:36:0,-28.9718,-339.318	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:49:39,10:39:1376:10:356:-17.6308,0,-109.385	0/1:81:55,26:55:1976:26:932:-59.8154,0,-153.731	0/1:49:29,20:29:1027:20:720:-50.3783,0,-77.9917	0/1:88:43,45:43:1527:45:1590:-116.898,0,-111.232	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:67:66,1:66:2351:1:36:0,-16.5707,-208.25	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:74:72,0:72:2576:0:0:0,-21.6742,-231.73	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:131:130,1:130:4628:1:27:0,-36.7351,-413.986	0/1:51:25,26:25:892:26:927:-68.3948,0,-65.2472	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/1:27:15,12:15:536:12:432:-31.0934,0,-40.447	0/1:82:49,33:49:1744:33:1184:-82.1839,0,-132.56	0/1:19:14,5:14:504:5:174:-10.2817,0,-39.9785	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/1:51:35,16:35:1260:16:572:-36.4609,0,-98.353	0/1:118:69,48:69:2459:48:1724:-119.865,0,-185.984	0/1:43:29,14:29:1040:14:491:-31.5768,0,-80.9701	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.916	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88
chr06	22622940	.	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chr06	23069980	.	A	T	37313.5	PASS	AB=0.488603;ABP=6.87098;AC=43;AF=0.233696;AN=184;AO=1682;CIGAR=1X;DP=7789;DPB=7789;DPRA=1.0934;EPP=3655.43;EPPR=13246.8;GTI=0;LEN=1;MEANALT=1.02041;MQM=59.981;MQMR=59.9895;NS=92;NUMALT=1;ODDS=5.63465;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59559;QR=217459;RO=6103;RPL=910;RPP=27.5962;RPPR=77.3196;RPR=772;RUN=1;SAF=910;SAP=27.5962;SAR=772;SRF=3279;SRP=76.6706;SRR=2824;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:279:6:201:-14.2026,0,-21.2331	0/1:71:33,38:33:1176:38:1348:-100.247,0,-84.7746	0/1:73:29,44:29:1017:44:1576:-120.156,0,-69.8646	0/0:159:159,0:159:5651:0:0:0,-47.8638,-508.712	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:99:99,0:99:3521:0:0:0,-29.802,-317.1	0/1:60:28,32:28:996:32:1131:-84.036,0,-71.8931	0/1:52:31,21:31:1094:21:708:-48.3791,0,-83.1147	0/1:170:86,84:86:3046:84:2948:-214.378,0,-223.196	0/1:56:28,28:28:1004:28:1000:-73.4577,0,-73.8182	0/0:109:109,0:109:3869:0:0:0,-32.8123,-348.406	0/1:111:60,51:60:2109:51:1817:-130.395,0,-156.661	0/1:70:38,32:38:1320:32:1135:-81.386,0,-98.0246	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.886	0/1:101:41,60:41:1468:60:2126:-161.204,0,-102.012	0/1:88:45,43:45:1578:43:1528:-111.322,0,-115.818	0/0:62:61,0:61:2179:0:0:0,-18.3628,-196.016	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:103:58,45:58:2056:45:1612:-114.364,0,-154.303	0/1:176:95,81:95:3385:81:2854:-204.118,0,-251.884	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:34:10,24:10:360:24:835:-65.2315,0,-22.5093	0/1:42:27,15:27:959:15:540:-36.2933,0,-73.9821	0/1:20:12,8:12:432:8:284:-19.8781,0,-33.2006	0/0:150:150,0:150:5373:0:0:0,-45.1545,-483.699	0/0:140:140,0:140:4979:0:0:0,-42.1442,-448.262	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/1:207:107,100:107:3832:100:3546:-257.037,0,-282.763	0/1:47:22,25:22:788:25:879:-65.2784,0,-57.0964	0/1:41:22,19:22:788:19:665:-47.8306,0,-58.9026	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:263:138,125:138:4922:125:4454:-321.86,0,-363.961	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.471	0/1:83:40,43:40:1432:43:1524:-112.468,0,-104.192	.:.:.:.:.:.:.:.	0/0:142:142,0:142:5079:0:0:0,-42.7463,-457.254	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/1:28:13,15:13:468:15:527:-39.3313,0,-34.0308	0/1:140:57,83:57:2031:83:2943:-222.96,0,-140.918	0/0:113:113,0:113:4010:0:0:0,-34.0164,-361.091	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:37:21,16:21:744:16:564:-39.9522,0,-56.1462	0/0:87:86,1:86:3059:1:36:0,-22.5913,-271.942	0/0:81:81,0:81:2907:0:0:0,-24.3834,-261.864	0/1:193:92,101:92:3279:101:3561:-262.599,0,-236.252	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.953	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	.:.:.:.:.:.:.:.	0/1:118:83,35:83:2967:35:1247:-77.013,0,-231.741	0/0:38:38,0:38:1343:0:0:0,-11.4391,-121.169	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:43:18,25:18:633:25:877:-66.2438,0,-44.3508	0/0:123:122,1:122:4364:1:36:0,-33.4284,-389.336	0/1:9:2,7:2:68:7:243:-19.4982,0,-3.74844	0/0:480:476,2:476:17003:2:72:0,-137.393,-1523.1	0/0:99:97,2:97:3467:2:72:0,-22.9652,-305.4	0/1:77:37,40:37:1324:40:1423:-105.187,0,-96.2828	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:69:66,3:66:2360:3:99:0,-11.5345,-203.422	0/0:87:87,0:87:3094:0:0:0,-26.1896,-278.688	0/0:41:40,1:40:1423:1:36:0,-8.74395,-124.768	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.393	0/0:99:99,0:99:3510:0:0:0,-29.802,-316.109	0/1:32:20,12:20:707:12:428:-29.2258,0,-54.3216	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:125:61,64:61:2188:64:2284:-168.192,0,-159.557	0/1:38:30,8:30:1053:8:288:-14.8283,0,-83.6394	0/0:231:231,0:231:8246:0:0:0,-69.5379,-742.15	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:185:185,0:185:6573:0:0:0,-55.6905,-591.653	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.486	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/0:153:153,0:153:5467:0:0:0,-46.0576,-492.158	0/1:106:58,48:58:2067:48:1703:-121.646,0,-154.391	0/0:95:95,0:95:3364:0:0:0,-28.5978,-302.977	0/1:88:41,47:41:1450:47:1644:-121.754,0,-104.304	0/1:168:93,75:93:3315:75:2648:-187.994,0,-247.996	0/1:44:25,19:25:896:19:680:-48.2838,0,-67.715	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/0:90:90,0:90:3194:0:0:0,-27.0927,-287.684	0/1:52:32,20:32:1144:20:705:-48.1192,0,-87.616	0/1:83:46,37:46:1640:37:1304:-92.6731,0,-122.903	0/1:122:43,79:43:1517:79:2820:-217.314,0,-100.095	0/0:260:259,0:259:9210:0:0:0,-77.9668,-828.513	0/0:178:178,0:178:6336:0:0:0,-53.5833,-570.333
chr06	23802969	.	CAAAG	AAAAT,CAAAT	67347.6	PASS	AB=0.571862,0.424595;ABP=91.6451,100.599;AC=140,46;AF=0.752688,0.247312;AN=186;AO=3626,841;CIGAR=1X3M1X,4M1X;DP=4489;DPB=4489;DPRA=0,0.8804;EPP=7876.77,1829.22;EPPR=0;GTI=3;LEN=5,1;MEANALT=1.74194,2.16667;MQM=27.754,45.2568;MQMR=0;NS=93;NUMALT=2;ODDS=0.794912;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=126373,30146;QR=0;RO=0;RPL=0,0;RPP=7876.77,1829.22;RPPR=0;RPR=3626,841;RUN=1,1;SAF=0,0;SAP=7876.77,1829.22;SAR=3626,841;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:3:0,1,2:0:0:1,2:36,72:-8.29345,-6.15931,-5.85828,-2.43517,0,-1.83311	1/2:71:0,50,21:0:0:50,21:1751,752:-169.238,-60.5588,-45.5073,-109.008,0,-102.687	1/2:63:0,40,23:0:0:40,23:1399,824:-151.889,-66.7559,-54.7147,-85.4564,0,-78.5327	1/1:45:0,45,0:0:0:45,0:1572,0:-106.647,-13.5464,0,-106.647,-13.5464,-106.647	1/1:13:0,13,0:0:0:13,0:464,0:-32.9052,-3.91339,0,-32.9052,-3.91339,-32.9052	1/1:35:0,35,0:0:0:35,0:1225,0:-86.3931,-10.5361,0,-86.3931,-10.5361,-86.3931	1/1:54:0,54,0:0:0:54,0:1882,0:-128.92,-16.2556,0,-128.92,-16.2556,-128.92	1/2:64:0,37,27:0:0:37,27:1306,972:-154.894,-76.3457,-65.2075,-78.8622,0,-70.7344	1/2:53:0,28,24:0:0:28,24:985,857:-129.04,-69.095,-60.6661,-60.0488,0,-52.8241	1/2:42:0,27,15:0:0:27,15:940,540:-97.3331,-42.8578,-34.73,-54.7913,0,-50.2759	1/2:30:0,17,13:0:0:17,13:606,459:-72.6284,-37.1858,-32.0683,-35.755,0,-31.8416	1/1:45:0,44,0:0:0:44,0:1515,0:-107.449,-13.2453,0,-107.449,-13.2453,-107.449	1/2:47:0,19,27:0:0:19,27:663,968:-118.461,-77.715,-71.9954,-40.7628,0,-32.635	1/2:46:0,25,21:0:0:25,21:841,748:-111.232,-59.7106,-52.1849,-51.8304,0,-45.5088	1/1:39:0,39,0:0:0:39,0:1375,0:-94.1115,-11.7402,0,-94.1115,-11.7402,-94.1115	1/2:27:0,13,14:0:0:13,14:436,504:-67.9879,-40.8517,-36.9383,-27.4449,0,-23.2304	1/2:44:0,28,16:0:0:28,16:983,576:-106.81,-46.7835,-38.3546,-60.3517,0,-55.5352	1/1:34:0,34,0:0:0:34,0:1195,0:-83.8347,-10.235,0,-83.8347,-10.235,-83.8347	1/1:23:0,23,0:0:0:23,0:804,0:-58.3137,-6.92369,0,-58.3137,-6.92369,-58.3137	1/2:60:0,43,17:0:0:43,17:1483,612:-136.589,-48.7938,-35.8495,-88.1201,0,-83.0026	1/2:50:0,35,15:0:0:35,15:1217,536:-118.877,-43.413,-32.877,-75.7924,0,-71.277	1/1:51:0,51,0:0:0:51,0:1780,0:-127.35,-15.3525,0,-127.35,-15.3525,-127.35	1/2:27:0,15,11:0:0:15,11:521,396:-62.7413,-31.4939,-26.9785,-31.3311,0,-28.0198	1/2:24:0,17,7:0:0:17,7:594,252:-57.1303,-20.6125,-15.495,-36.8487,0,-34.7415	1/2:31:0,18,13:0:0:18,13:600,468:-74.6796,-37.9591,-32.5405,-37.0358,0,-33.1224	1/1:154:0,152,1:0:0:152,1:5317,36:-378.744,-45.7566,0,-375.835,-42.8459,-375.533	1/1:142:0,141,0:0:0:141,0:4878,0:-341.359,-42.4452,0,-341.359,-42.4452,-341.359	1/1:21:0,21,0:0:0:21,0:745,0:-51.7468,-6.32163,0,-51.7468,-6.32163,-51.7468	1/2:114:0,67,47:0:0:67,47:2347,1684:-283.772,-136.04,-115.871,-148.056,0,-133.907	1/2:68:0,44,24:0:0:44,24:1551,860:-163.707,-69.4438,-56.1984,-94.5873,0,-87.3626	1/2:78:0,45,33:0:0:45,33:1560,1188:-188.529,-95.3657,-81.8193,-93.4791,0,-83.5451	1/1:3:0,3,0:0:0:3,0:94,0:-6.58545,-0.90309,0,-6.58545,-0.90309,-6.58545	1/1:5:0,5,0:0:0:5,0:180,0:-11.8994,-1.50515,0,-11.8994,-1.50515,-11.8994	1/2:6:0,1,5:0:0:1,5:36,176:-16.6681,-14.519,-14.2179,-2.43517,0,-0.930022	1/2:12:0,7,4:0:0:7,4:251,144:-26.2359,-11.6611,-9.55392,-14.5998,0,-13.3957	1/1:5:0,5,0:0:0:5,0:175,0:-12.5612,-1.50515,0,-12.5612,-1.50515,-12.5612	1/2:122:0,63,58:0:0:63,58:2181,2079:-306.074,-167.562,-148.597,-138.543,0,-121.083	1/1:129:0,128,0:0:0:128,0:4412,0:-311.209,-38.5318,0,-311.209,-38.5318,-311.209	1/2:43:0,16,27:0:0:16,27:545,963:-111.784,-77.8742,-73.0577,-34.2103,0,-26.0824	.:.:.:.:.:.:.:.	1/1:97:0,96,0:0:0:96,0:3363,0:-233.276,-28.8989,0,-233.276,-28.8989,-233.276	1/1:28:0,28,0:0:0:28,0:983,0:-68.8016,-8.42884,0,-68.8016,-8.42884,-68.8016	1/2:34:0,18,16:0:0:18,16:630,576:-85.0338,-46.637,-41.2185,-38.7121,0,-33.8956	1/2:34:0,19,15:0:0:19,15:660,540:-83.33,-43.7444,-38.0248,-39.901,0,-35.3855	1/2:33:0,20,12:0:0:20,12:688,432:-75.4456,-34.4102,-28.3896,-41.1289,0,-37.5165	1/1:80:0,78,0:0:0:78,0:2728,0:-195.595,-23.4803,0,-195.595,-23.4803,-195.595	1/2:37:0,20,17:0:0:20,17:682,612:-91.0885,-49.2206,-43.2,-42.181,0,-37.0635	1/1:56:0,56,0:0:0:56,0:1971,0:-130.661,-16.8577,0,-130.661,-16.8577,-130.661	1/1:64:0,64,0:0:0:64,0:2208,0:-150.085,-19.2659,0,-150.085,-19.2659,-150.085	1/2:56:0,42,14:0:0:42,14:1466,504:-126.285,-40.8517,-28.2085,-85.7643,0,-81.5499	1/1:25:0,25,0:0:0:25,0:865,0:-62.3851,-7.52575,0,-62.3851,-7.52575,-62.3851	1/1:4:0,4,0:0:0:4,0:139,0:-9.71297,-1.20412,0,-9.71297,-1.20412,-9.71297	1/1:136:0,135,0:0:0:135,0:4719,0:-329.983,-40.6391,0,-329.983,-40.6391,-329.983	1/2:13:0,7,6:0:0:7,6:250,216:-33.4002,-17.8113,-15.7041,-15.9109,0,-14.1047	1/2:7:0,3,4:0:0:3,4:107,144:-18.3984,-11.9628,-11.0597,-6.74419,0,-5.54007	1/2:40:0,21,19:0:0:21,19:725,680:-97.9884,-53.6567,-47.3351,-44.6403,0,-38.9208	1/1:25:0,25,0:0:0:25,0:875,0:-59.4924,-7.52575,0,-59.4924,-7.52575,-59.4924	1/2:3:0,2,1:0:0:2,1:71,36:-7.43,-3.26578,-2.66372,-4.49136,0,-4.19033	1/1:11:0,11,0:0:0:11,0:382,0:-27.8046,-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chr06	23869767	.	T	C	28562.1	PASS	AB=0.426168;ABP=205.659;AC=48;AF=0.258065;AN=186;AO=1838;CIGAR=1X;DP=9335;DPB=9335;DPRA=0.980847;EPP=3994.18;EPPR=16276;GTI=4;LEN=1;MEANALT=1.03636;MQM=59.9869;MQMR=59.9967;NS=93;NUMALT=1;ODDS=1.99901;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65630;QR=267993;RO=7494;RPL=0;RPP=3994.18;RPPR=16276;RPR=1838;RUN=1;SAF=1838;SAP=3994.18;SAR=0;SRF=7494;SRP=16276;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:31,20:31:1108:20:708:-48.6931,0,-84.6785	0/1:61:39,22:39:1400:22:769:-51.1658,0,-107.936	0/1:224:134,90:134:4765:90:3216:-222.232,0,-361.578	0/0:214:214,0:214:7640:0:0:0,-64.4204,-687.64	0/0:70:68,2:68:2432:2:72:0,-14.2354,-212.299	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:92:91,1:91:3256:1:36:0,-24.0965,-289.663	0/1:210:122,88:122:4380:88:3124:-218.172,0,-331.156	0/1:83:50,33:50:1800:33:1160:-79.7193,0,-137.297	0/1:89:45,44:45:1612:44:1572:-114.98,0,-118.578	0/1:58:40,18:40:1432:18:648:-41.1921,0,-111.718	0/0:110:110,0:110:3929:0:0:0,-33.1133,-353.801	0/1:66:31,34:31:1108:34:1216:-89.8199,0,-80.1043	0/1:106:60,46:60:2152:46:1644:-116.339,0,-162.038	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/1:77:46,31:46:1652:31:1104:-76.4913,0,-125.789	0/1:41:17,24:17:612:24:860:-65.3796,0,-43.0712	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:202:114,88:114:4080:88:3144:-222.378,0,-306.578	0/1:163:76,87:76:2728:87:3117:-231.689,0,-196.695	0/0:131:131,0:131:4680:0:0:0,-39.4349,-421.362	0/1:58:35,23:35:1244:23:816:-56.302,0,-94.8049	0/1:41:27,14:27:968:14:504:-33.3559,0,-75.0951	0/1:62:41,21:41:1468:21:744:-48.6205,0,-113.752	0/0:284:281,3:281:10072:3:108:0,-75.4173,-896.337	0/0:260:260,0:260:9321:0:0:0,-78.2678,-838.852	0/0:28:27,1:27:968:1:36:0,-4.83056,-83.8391	0/1:271:155,116:155:5533:116:4144:-291.556,0,-416.516	0/1:206:158,48:158:5656:48:1728:-93.7931,0,-447.148	0/1:73:43,30:43:1528:30:1068:-74.4569,0,-115.838	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:157:84,73:84:3008:73:2604:-187.345,0,-223.69	0/0:118:118,0:118:4224:0:0:0,-35.5215,-380.34	0/1:46:21,25:21:752:25:890:-66.571,0,-54.1589	.:.:.:.:.:.:.:.	0/0:161:161,0:161:5768:0:0:0,-48.4658,-519.235	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:207:125,82:125:4461:82:2920:-200.723,0,-339.347	0/1:58:39,19:39:1385:19:680:-44.0694,0,-107.487	0/1:67:30,37:30:1080:37:1324:-99.2931,0,-77.3442	0/0:130:130,0:130:4625:0:0:0,-39.1339,-416.392	0/1:126:68,58:68:2428:58:2053:-147.111,0,-180.846	0/0:223:222,0:222:7936:0:0:0,-66.8287,-714.055	0/0:94:94,0:94:3349:0:0:0,-28.2968,-301.626	0/1:207:110,97:110:3937:97:3480:-251.098,0,-292.207	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:149:149,0:149:5301:0:0:0,-44.8535,-477.227	0/1:95:57,38:57:2040:38:1363:-94.3727,0,-155.274	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:163:93,70:93:3324:70:2512:-177.259,0,-250.306	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6434	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:85:46,39:46:1656:39:1392:-99.9915,0,-123.741	0/0:83:83,0:83:2932:0:0:0,-24.9855,-264.115	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/0:207:207,0:207:7408:0:0:0,-62.3132,-666.767	0/0:178:177,1:177:6340:1:36:0,-49.9851,-567.092	0/1:74:47,27:47:1680:27:968:-65.1611,0,-129.211	0/0:101:101,0:101:3596:0:0:0,-30.404,-323.848	0/0:232:232,0:232:8266:0:0:0,-69.839,-743.952	0/0:228:226,2:226:8077:2:68:0,-62.1771,-720.49	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:26:20,6:20:712:6:216:-11.9637,0,-56.5799	0/1:102:59,43:59:2100:43:1536:-107.828,0,-158.565	0/1:121:65,56:65:2320:56:1996:-143.489,0,-172.636	0/1:116:69,46:69:2456:46:1652:-113.99,0,-186.317	0/0:199:199,0:199:7132:0:0:0,-59.905,-641.937	0/0:188:188,0:188:6705:0:0:0,-56.5936,-603.527	0/0:117:116,1:116:4164:1:36:0,-31.6222,-371.343	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/0:150:150,0:150:5380:0:0:0,-45.1545,-484.33	0/0:198:198,0:198:7088:0:0:0,-59.6039,-637.98	0/1:55:34,21:34:1216:21:752:-51.4496,0,-93.1899	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/1:41:15,26:15:536:26:936:-72.2172,0,-36.2326	0/1:116:67,49:67:2397:49:1752:-123.044,0,-181.066	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:80:80,0:80:2871:0:0:0,-24.0824,-258.626	0/1:45:28,17:28:1004:17:604:-41.1443,0,-77.1295	0/1:110:54,56:54:1932:56:1990:-146.259,0,-141.043	0/1:65:22,43:22:769:43:1540:-119.326,0,-49.9617	0/0:198:197,1:197:7052:1:36:0,-56.0057,-631.143	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.337
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chr06	23869824	.	T	A	63684.6	PASS	AB=0.43068;ABP=297.14;AC=48;AF=0.258065;AN=186;AO=3063;CIGAR=1X;DP=15716;DPB=15716;DPRA=0.982921;EPP=6636.87;EPPR=27376.7;GTI=4;LEN=1;MEANALT=1.03226;MQM=59.9935;MQMR=59.9938;NS=93;NUMALT=1;ODDS=1.63116;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107055;QR=450001;RO=12650;RPL=1753;RPP=142.138;RPPR=884.432;RPR=1310;RUN=1;SAF=1753;SAP=142.138;SAR=1310;SRF=7447;SRP=867.4;SRR=5203;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:96:56,40:56:1994:40:1408:-98.1183,0,-150.834	0/1:108:66,42:66:2327:42:1499:-102.693,0,-177.177	0/1:337:194,143:194:6871:143:5029:-351.316,0,-517.016	0/0:342:340,2:340:12087:2:58:0,-97.4445,-1082.18	0/0:127:123,4:123:4395:4:144:0,-24.9172,-382.41	0/0:95:94,1:94:3320:1:21:0,-26.4979,-296.917	0/0:142:141,1:141:5043:1:36:0,-39.148,-450.4	0/1:280:165,115:165:5848:115:4021:-277.798,0,-442.146	0/1:171:109,62:109:3891:62:2171:-144.181,0,-298.908	0/1:155:89,66:89:3179:66:2312:-161.68,0,-239.674	0/1:105:65,40:65:2324:40:1404:-95.0463,0,-177.812	0/0:206:206,0:206:7331:0:0:0,-62.0122,-659.842	0/1:131:58,73:58:2064:73:2604:-195.174,0,-146.596	0/1:144:83,61:83:2960:61:2097:-145.651,0,-223.286	0/0:122:122,0:122:4363:0:0:0,-36.7257,-392.844	0/1:124:64,59:64:2272:59:2050:-147.382,0,-167.357	0/1:71:31,40:31:1091:40:1407:-105.553,0,-77.1256	0/0:61:61,0:61:2170:0:0:0,-18.3628,-195.565	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:254:149,105:149:5316:105:3657:-252.877,0,-402.112	0/1:330:163,167:163:5757:167:5882:-430.162,0,-418.911	0/0:269:269,0:269:9588:0:0:0,-80.9771,-862.878	0/1:138:90,48:90:3198:48:1696:-111.384,0,-246.502	0/1:54:32,22:32:1140:22:748:-51.3776,0,-86.6536	0/1:134:87,47:87:3099:47:1634:-107.009,0,-238.8	0/0:476:472,4:472:16804:4:144:0,-129.977,-1498.69	0/0:487:487,0:487:17326:0:0:0,-146.602,-1557.44	0/0:67:66,1:66:2349:1:36:0,-16.5707,-208.069	0/1:413:259,154:259:9204:154:5359:-358.129,0,-704.013	0/1:285:204,81:204:7278:81:2867:-172.475,0,-569.28	0/1:137:88,49:88:3139:49:1683:-110.509,0,-241.495	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/1:7:1,6:1:36:6:203:-16.494,0,-1.49106	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:376:192,184:192:6818:184:6464:-468.668,0,-500.507	0/0:219:219,0:219:7801:0:0:0,-65.9256,-702.121	0/1:81:43,38:43:1523:38:1339:-96.4258,0,-112.979	.:.:.:.:.:.:.:.	0/0:281:281,0:281:10012:0:0:0,-84.5894,-901.019	0/0:38:38,0:38:1324:0:0:0,-11.4391,-119.457	0/1:286:169,117:169:6010:117:4057:-279.232,0,-454.912	0/1:131:76,55:76:2711:55:1942:-135.62,0,-204.799	0/1:115:53,62:53:1888:62:2182:-162.027,0,-135.58	0/0:211:211,0:211:7511:0:0:0,-63.5173,-676.035	0/1:197:107,90:107:3828:90:3158:-225.145,0,-285.414	0/0:380:378,2:378:13433:2:68:0,-107.934,-1202.32	0/0:158:158,0:158:5627:0:0:0,-47.5627,-506.551	0/1:247:140,106:140:4990:106:3672:-256.277,0,-374.836	0/0:108:108,0:108:3835:0:0:0,-32.5112,-345.349	0/1:24:17,7:17:591:7:248:-15.4395,0,-46.2905	0/0:206:205,1:205:7261:1:32:0,-58.8129,-650.349	0/1:115:76,39:76:2700:39:1327:-85.1056,0,-208.624	0/1:13:9,4:9:320:4:140:-9.03119,0,-25.229	0/1:229:133,96:133:4748:96:3316:-229.73,0,-358.544	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:124:70,54:70:2465:54:1874:-131.61,0,-184.774	0/0:152:150,2:150:5320:2:63:0,-39.7734,-472.954	0/1:7:3,4:3:104:4:140:-10.8374,0,-7.5956	0/0:397:397,0:397:14168:0:0:0,-119.509,-1274.88	0/0:352:352,0:352:12528:0:0:0,-105.963,-1127.35	0/1:112:72,40:72:2558:40:1381:-90.8692,0,-196.753	0/0:179:179,0:179:6372:0:0:0,-53.8844,-573.575	0/0:340:339,1:339:12008:1:36:0,-98.7519,-1076.98	0/0:306:302,4:302:10738:4:144:0,-78.8016,-953.017	0/0:114:114,0:114:4059:0:0:0,-34.3174,-365.499	0/0:86:86,0:86:3052:0:0:0,-25.8886,-274.908	0/0:83:83,0:83:2975:0:0:0,-24.9855,-267.982	0/1:37:25,12:25:865:12:428:-27.7207,0,-67.0251	0/1:181:92,89:92:3255:89:3103:-225.012,0,-238.687	0/1:181:92,89:92:3269:89:3063:-221.416,0,-239.944	0/1:246:147,99:147:5230:99:3494:-240.618,0,-396.787	0/0:271:271,0:271:9628:0:0:0,-81.5791,-866.476	0/0:284:284,0:284:10049:0:0:0,-85.4925,-904.353	0/0:193:192,1:192:6844:1:36:0,-54.5005,-612.433	0/1:5:1,4:1:36:4:136:-11.0704,0,-2.09312	0/0:194:194,0:194:6916:0:0:0,-58.3998,-622.508	0/0:237:237,0:237:8398:0:0:0,-71.3441,-755.831	0/0:350:349,1:349:12431:1:21:0,-103.261,-1116.53	0/1:94:52,42:52:1844:42:1483:-105.467,0,-137.941	0/0:127:127,0:127:4540:0:0:0,-38.2308,-408.768	0/1:92:39,53:39:1392:53:1840:-138.184,0,-97.8843	0/1:244:146,98:146:5198:98:3471:-239.153,0,-394.51	0/1:36:25,11:25:896:11:369:-22.6949,0,-70.1233	0/0:179:178,0:178:6361:0:0:0,-53.5833,-572.22	0/0:155:155,0:155:5508:0:0:0,-46.6596,-495.848	0/1:85:48,37:48:1716:37:1311:-92.7033,0,-129.138	0/1:165:79,86:79:2810:86:2956:-216.607,0,-203.469	0/1:138:44,94:44:1576:94:3303:-255.948,0,-100.589	0/0:315:315,0:315:11170:0:0:0,-94.8244,-1005.2	0/0:194:191,3:191:6827:3:108:0,-48.3246,-604.426
chr06	24103825	.	C	T	49814.1	PASS	AB=0.540814;ABP=80.1161;AC=46;AF=0.244681;AN=188;AO=2909;CIGAR=1X;DP=10996;DPB=10996;DPRA=1.19343;EPP=6302.46;EPPR=17487.8;GTI=0;LEN=1;MEANALT=1.0678;MQM=59.1605;MQMR=59.9144;NS=94;NUMALT=1;ODDS=1.87693;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103716;QR=286250;RO=8080;RPL=2907;RPP=6302.46;RPPR=17531.1;RPR=2;RUN=1;SAF=2909;SAP=6319.82;SAR=0;SRF=8075;SRP=17505.1;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:34,40:34:1220:40:1432:-106.873,0,-87.8306	0/1:207:73,134:73:2596:134:4798:-368.876,0,-171.574	0/1:97:46,51:46:1644:51:1832:-135.887,0,-119.048	0/0:178:178,0:178:6309:0:0:0,-53.5833,-567.892	0/0:111:111,0:111:3947:0:0:0,-33.4143,-355.421	0/0:74:73,1:73:2602:1:36:0,-18.6779,-230.829	0/0:96:95,1:95:3381:1:36:0,-25.3006,-300.907	0/1:268:111,156:111:3911:156:5547:-418.176,0,-271.42	0/1:140:57,83:57:2005:83:2971:-225.31,0,-138.575	0/1:133:70,63:70:2478:63:2244:-162.156,0,-183.236	0/1:66:35,31:35:1229:31:1091:-78.5986,0,-90.999	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/1:76:34,42:34:1200:42:1512:-113.456,0,-85.4246	0/1:94:38,56:38:1329:56:1982:-149.938,0,-91.6109	0/0:67:67,0:67:2369:0:0:0,-20.169,-213.467	0/1:78:41,37:41:1431:37:1306:-94.3511,0,-105.602	0/1:110:54,56:54:1873:56:1972:-144.471,0,-135.729	0/0:53:53,0:53:1849:0:0:0,-15.9546,-166.685	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:191:94,97:94:3347:97:3480:-255.786,0,-243.951	0/1:245:115,130:115:4110:130:4619:-341.975,0,-295.194	0/0:112:112,0:112:3933:0:0:0,-33.7154,-354.157	0/1:130:62,68:62:2183:68:2432:-179.488,0,-157.597	0/1:247:137,110:137:4864:110:3886:-274.994,0,-363.561	0/1:87:33,54:33:1152:54:1927:-147.417,0,-77.7938	0/0:338:331,6:331:11766:6:216:0,-82.0164,-1038.58	0/0:258:258,0:258:9169:0:0:0,-77.6657,-825.123	0/0:35:35,0:35:1234:0:0:0,-10.536,-111.363	0/1:192:91,101:91:3220:101:3610:-267.161,0,-232.197	0/1:140:83,57:83:2963:57:2018:-139.745,0,-224.759	0/1:109:58,51:58:2049:51:1820:-131.183,0,-151.866	0/0:42:41,0:41:1472:0:0:0,-12.3422,-132.416	0/0:41:41,0:41:1444:0:0:0,-12.3422,-130.225	0/0:21:20,1:20:708:1:36:0,-2.72335,-60.3902	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:258:85,173:85:2983:173:6162:-476.774,0,-191.034	0/0:242:242,0:242:8544:0:0:0,-72.8493,-768.955	0/1:92:44,48:44:1562:48:1720:-127.384,0,-113.175	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:160:160,0:160:5694:0:0:0,-48.1648,-512.576	0/0:51:50,1:50:1796:1:36:0,-11.7543,-158.238	0/1:211:72,139:72:2553:139:4949:-381.937,0,-166.474	0/1:163:81,82:81:2871:82:2930:-214.66,0,-209.558	0/1:88:46,42:46:1611:42:1487:-107.602,0,-118.785	0/0:135:134,0:134:4779:0:0:0,-40.338,-429.777	0/1:96:41,55:41:1468:55:1953:-146.567,0,-103.515	0/0:209:207,2:207:7314:2:72:0,-56.0785,-651.464	0/0:182:181,1:181:6444:1:36:0,-51.1892,-576.439	0/1:119:49,70:49:1730:70:2505:-189.748,0,-120.161	0/0:198:197,0:197:7021:0:0:0,-59.3029,-631.461	0/1:14:9,5:9:324:5:176:-11.9588,0,-25.2914	0/0:71:71,0:71:2521:0:0:0,-21.3731,-227.138	0/1:27:5,22:5:176:22:792:-63.4755,0,-8.05721	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:110:39,71:39:1382:71:2514:-193.369,0,-91.0732	0/0:50:50,0:50:1759:0:0:0,-15.0515,-158.59	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/0:49:49,0:49:1737:0:0:0,-14.7505,-156.613	0/1:99:39,59:39:1392:59:2097:-159.135,0,-95.7183	0/0:122:120,2:120:4257:2:72:0,-29.8889,-376.474	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:148:148,0:148:5277:0:0:0,-44.5524,-475.066	0/0:255:248,7:248:8753:7:252:0,-53.7625,-764.748	0/1:94:59,35:59:2099:35:1256:-84.2133,0,-160.876	0/0:54:54,0:54:1932:0:0:0,-16.2556,-173.786	0/0:189:187,2:187:6622:2:72:0,-50.0579,-589.212	0/0:80:80,0:80:2833:0:0:0,-24.0824,-255.206	0/0:38:38,0:38:1319:0:0:0,-11.4391,-119.006	0/0:113:112,1:112:3964:1:36:0,-30.4181,-353.284	0/0:66:66,0:66:2308:0:0:0,-19.868,-207.977	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:71:41,30:41:1440:30:1076:-75.6432,0,-108.52	0/1:63:26,37:26:927:37:1319:-99.0712,0,-64.7825	0/1:308:125,183:125:4416:183:6554:-495.847,0,-304.896	0/0:230:230,0:230:8157:0:0:0,-69.2369,-734.102	0/0:184:183,1:183:6497:1:36:0,-51.7912,-581.19	0/0:182:181,1:181:6399:1:36:0,-51.1892,-572.402	0/1:9:4,5:4:144:5:180:-13.1278,0,-10.6043	0/0:228:228,0:228:8099:0:0:0,-68.6348,-728.916	0/0:123:123,0:123:4320:0:0:0,-37.0267,-388.977	0/0:272:272,0:272:9677:0:0:0,-81.8802,-870.828	0/1:158:82,76:82:2893:76:2718:-197.297,0,-213.042	0/0:57:57,0:57:2011:0:0:0,-17.1587,-181.26	0/1:131:70,60:70:2486:60:2148:-154.002,0,-184.499	0/1:201:94,107:94:3321:107:3811:-282.439,0,-238.6	0/1:48:29,19:29:1036:19:684:-47.4124,0,-79.0752	0/0:81:81,0:81:2857:0:0:0,-24.3834,-257.365	0/0:79:79,0:79:2798:0:0:0,-23.7814,-252.058	0/1:39:17,22:17:608:22:784:-59.1153,0,-43.3119	0/1:107:57,50:57:1964:50:1787:-128.84,0,-144.818	0/1:104:38,66:38:1346:66:2339:-179.344,0,-90.1316	0/0:66:66,0:66:2299:0:0:0,-19.868,-207.17	0/0:148:148,0:148:5203:0:0:0,-44.5524,-467.392
chr06	24105071	.	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chr06	24579714	.	C	A	9038.21	PASS	AB=0.31232;ABP=745.553;AC=47;AF=0.25;AN=188;AO=770;CIGAR=1X;DP=6103;DPB=6103;DPRA=0.817592;EPP=1675.04;EPPR=11577;GTI=10;LEN=1;MEANALT=1.01754;MQM=59.9377;MQMR=59.9544;NS=94;NUMALT=1;ODDS=0.688032;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27521;QR=190838;RO=5330;RPL=2;RPP=1657.72;RPPR=11577;RPR=768;RUN=1;SAF=768;SAP=1657.72;SAR=2;SRF=5330;SRP=11577;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:14,5:14:496:5:180:-10.8325,0,-39.2547	0/1:38:23,15:23:816:15:536:-37.1357,0,-62.3226	0/1:65:39,26:39:1388:26:932:-64.6319,0,-105.646	0/0:144:143,1:143:5140:1:36:0,-39.75,-459.141	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:150:150,0:150:5364:0:0:0,-45.1545,-482.893	0/1:88:73,15:73:2616:15:540:-22.4459,0,-209.197	0/1:49:24,25:24:864:25:900:-66.5705,0,-63.3036	0/1:66:45,21:45:1604:21:756:-48.4992,0,-124.782	0/1:60:39,21:39:1400:21:756:-50.3054,0,-108.237	0/0:111:111,0:111:3960:0:0:0,-33.4143,-355.965	0/1:79:57,22:57:2036:22:788:-47.4634,0,-159.731	0/1:65:36,29:36:1296:29:1044:-74.7079,0,-97.377	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/0:92:91,0:91:3260:0:0:0,-27.3937,-293.261	0/1:33:18,15:18:644:15:532:-38.2791,0,-48.3566	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:28:19,9:19:684:9:313:-20.0762,0,-53.4615	0/1:88:54,34:54:1928:34:1174:-79.4694,0,-147.306	0/1:86:57,29:57:2044:29:1040:-68.0258,0,-158.343	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8777	0/1:57:43,14:43:1540:14:504:-28.5394,0,-121.734	0/0:36:35,1:35:1248:1:36:0,-7.2388,-109.027	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.2574	0/0:204:204,0:204:7295:0:0:0,-61.4101,-656.545	0/1:102:76,26:76:2728:26:932:-53.4938,0,-215.058	0/1:25:19,6:19:680:6:216:-12.2648,0,-54.0034	0/1:103:72,31:72:2588:31:1112:-69.3853,0,-202.162	0/1:56:31,25:31:1116:25:885:-63.1088,0,-83.894	0/1:53:40,13:40:1428:13:468:-26.5051,0,-112.863	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:154:122,32:122:4376:32:1140:-56.5506,0,-347.654	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:27:20,7:20:720:7:252:-14.9011,0,-57.001	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:74:52,22:52:1852:22:788:-48.9686,0,-144.684	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.729	0/1:48:29,19:29:1040:19:665:-45.1763,0,-79.4649	0/1:50:35,15:35:1252:15:536:-33.5233,0,-97.9336	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.393	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.8	0/1:44:19,25:19:684:25:892:-67.3544,0,-48.645	0/0:110:110,0:110:3952:0:0:0,-33.1133,-354.508	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:99:77,22:77:2772:22:784:-41.0819,0,-219.91	0/0:87:86,1:86:3088:1:36:0,-22.5913,-274.549	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:26:20,6:20:720:6:216:-11.9637,0,-57.302	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:63:49,14:49:1756:14:500:-26.3713,0,-139.359	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.904	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:37:20,17:20:716:17:604:-43.5525,0,-53.6296	0/0:107:106,1:106:3800:1:36:0,-28.6119,-337.58	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:176:175,1:175:6268:1:36:0,-49.383,-560.126	0/0:136:136,0:136:4873:0:0:0,-40.9401,-438.72	0/1:43:38,5:38:1360:5:180:-3.60778,0,-109.756	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.439	0/0:163:161,2:161:5772:2:72:0,-42.2312,-512.757	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:57:56,1:56:1988:1:32:0,-13.9594,-175.995	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:16:11,5:11:396:5:176:-11.3685,0,-31.0794	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:51:36,15:36:1296:15:540:-33.584,0,-101.591	0/0:125:125,0:125:4472:0:0:0,-37.6287,-402.65	0/0:194:194,0:194:6956:0:0:0,-58.3998,-626.104	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:91:91,0:91:3263:0:0:0,-27.3937,-293.889	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:77:75,2:75:2680:2:72:0,-16.3426,-234.609	0/0:41:40,1:40:1417:1:36:0,-8.74395,-124.227	0/0:163:163,0:163:5828:0:0:0,-49.0679,-524.634	0/1:34:21,12:21:756:12:432:-28.9274,0,-58.0734	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/1:54:39,15:39:1384:15:536:-32.3192,0,-108.603	0/1:126:89,37:89:3188:37:1332:-82.2526,0,-249.214	0/1:19:8,11:8:275:11:396:-30.2632,0,-19.3639	0/0:118:118,0:118:4227:0:0:0,-35.5215,-380.609	0/0:76:75,0:75:2688:0:0:0,-22.5772,-241.844	0/1:48:34,14:34:1216:14:504:-31.2487,0,-95.2971	0/1:85:61,24:61:2164:24:864:-52.495,0,-169.44	0/1:76:46,30:46:1648:30:1072:-73.9142,0,-125.73	0/0:87:86,1:86:3076:1:36:0,-22.5913,-273.47	0/0:140:140,0:140:5000:0:0:0,-42.1442,-450.149
chr06	25625972	.	T	G	144841	PASS	AB=0.495345;ABP=4.00093;AC=138;AF=0.734043;AN=188;AO=6970;CIGAR=1X;DP=9636;DPB=9636;DPRA=0;EPP=15138.2;EPPR=5783.47;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9858;MQMR=59.9816;NS=94;NUMALT=1;ODDS=5.80601;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=249269;QR=95254;RO=2662;RPL=6970;RPP=15138.2;RPPR=5783.47;RPR=0;RUN=1;SAF=0;SAP=15138.2;SAR=6970;SRF=0;SRP=5783.47;SRR=2662;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:35,43:35:1260:43:1529:-114.422,0,-90.2251	0/1:79:34,45:34:1209:45:1588:-119.429,0,-85.3328	0/1:152:96,56:96:3452:56:2004:-134.877,0,-265.135	1/1:189:0,189:0:0:189:6772:-609.552,-56.8947,0	1/1:68:1,67:1:36:67:2384:-211.22,-16.8718,0	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	0/1:141:75,66:75:2692:66:2368:-170.933,0,-200.079	0/1:157:72,85:72:2592:85:3008:-223.689,0,-186.266	0/1:83:43,40:43:1544:40:1432:-104.192,0,-114.268	0/1:138:88,50:88:3115:50:1792:-120.02,0,-239.031	1/1:108:0,108:0:0:108:3872:-348.674,-32.5112,0	0/1:108:52,56:52:1864:56:1991:-146.952,0,-135.528	0/1:142:67,74:67:2404:74:2652:-196.121,0,-173.811	1/1:68:0,68:0:0:68:2428:-218.776,-20.47,0	1/1:85:0,85:0:0:85:3032:-273.109,-25.5876,0	0/1:81:47,34:47:1677:34:1220:-85.7234,0,-126.832	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	0/1:59:38,21:38:1353:21:756:-50.6065,0,-104.308	0/1:124:69,55:69:2472:55:1976:-140.787,0,-185.406	0/1:173:71,102:71:2548:102:3622:-274.11,0,-177.489	1/1:87:0,87:0:0:87:3108:-279.948,-26.1896,0	0/1:170:85,85:85:3044:85:3056:-224.093,0,-223.015	0/1:109:12,97:12:432:97:3449:-277.811,0,-6.40893	0/1:117:63,54:63:2249:54:1936:-139.296,0,-167.451	1/1:241:1,240:1:36:240:8616:-771.834,-68.95,0	0/1:204:113,91:113:4064:91:3246:-230.952,0,-304.535	0/1:31:14,17:14:504:17:608:-45.7201,0,-36.3662	0/1:274:136,138:136:4873:138:4932:-361.549,0,-356.238	0/1:101:38,63:38:1356:63:2260:-173.259,0,-91.9365	0/1:99:50,48:50:1800:48:1705:-123.873,0,-132.421	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	1/1:30:0,30:0:0:30:1058:-95.5301,-9.0309,0	0/1:220:112,108:112:4024:108:3848:-279.801,0,-296.12	1/1:91:0,91:0:0:91:3252:-292.902,-27.3937,0	0/1:108:42,66:42:1508:66:2360:-180.147,0,-103.503	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:100:55,45:55:1976:45:1616:-115.627,0,-148.012	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	0/1:137:61,76:61:2177:76:2716:-203.443,0,-154.953	0/1:69:29,40:29:1028:40:1420:-107.326,0,-72.062	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	1/1:112:0,112:0:0:112:4014:-361.448,-33.7154,0	0/1:105:54,51:54:1928:51:1828:-133.193,0,-142.189	1/1:112:0,112:0:0:112:4020:-361.988,-33.7154,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	0/1:114:68,45:68:2414:45:1612:-110.994,0,-183.137	1/1:92:0,92:0:0:92:3284:-295.78,-27.6948,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-23.7364	1/1:99:0,99:0:0:99:3540:-318.809,-29.802,0	0/1:97:51,46:51:1832:46:1640:-118.689,0,-135.961	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:111:44,67:44:1584:67:2404:-183.202,0,-109.437	1/1:48:0,48:0:0:48:1704:-153.646,-14.4494,0	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	1/1:18:0,18:0:0:18:628:-56.8455,-5.41854,0	0/1:157:84,73:84:2986:73:2616:-188.426,0,-221.708	1/1:118:1,117:1:36:117:4192:-373.863,-31.9233,0	0/1:17:12,5:12:424:5:176:-11.0675,0,-33.3789	1/1:132:0,132:0:0:132:4744:-427.116,-39.736,0	1/1:188:2,186:2:72:186:6652:-591.836,-49.7569,0	0/1:122:47,75:47:1680:75:2684:-205.079,0,-114.761	0/1:54:21,33:21:752:33:1188:-90.973,0,-51.7506	1/1:201:0,201:0:0:201:7197:-647.785,-60.507,0	1/1:145:3,142:3:93:142:5088:-449.386,-34.9726,0	1/1:81:1,80:1:36:80:2850:-253.14,-20.7852,0	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	1/1:60:0,60:0:0:60:2132:-192.147,-18.0618,0	0/1:30:15,15:15:540:15:540:-39.9056,0,-39.9056	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	0/1:106:51,55:51:1816:55:1943:-143.236,0,-131.812	0/1:256:124,132:124:4440:132:4720:-347.893,0,-322.707	1/1:161:0,161:0:0:161:5772:-519.594,-48.4658,0	1/1:148:0,148:0:0:148:5283:-475.608,-44.5524,0	1/1:94:0,94:0:0:94:3360:-302.617,-28.2968,0	0/1:38:19,19:19:684:19:684:-50.4512,0,-50.4512	1/1:116:0,116:0:0:116:4156:-374.223,-34.9195,0	1/1:122:0,122:0:0:122:4356:-392.216,-36.7257,0	1/1:178:0,177:0:0:177:6328:-569.253,-53.2823,0	0/1:79:44,35:44:1584:35:1252:-89.2037,0,-119.07	1/1:106:0,106:0:0:106:3812:-343.276,-31.9092,0	0/1:55:27,28:27:957:28:1008:-73.8513,0,-69.8872	0/1:143:75,68:75:2692:68:2444:-177.167,0,-199.477	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	1/1:92:0,92:0:0:92:3296:-296.859,-27.6948,0	1/1:92:0,92:0:0:92:3308:-297.937,-27.6948,0	0/1:115:64,51:64:2239:51:1816:-129.103,0,-167.151	0/1:214:137,77:137:4904:77:2756:-183.862,0,-377.091	0/1:94:66,28:66:2364:28:988:-60.9371,0,-184.722	1/1:140:0,140:0:0:140:5006:-450.686,-42.1442,0	1/1:132:0,132:0:0:132:4716:-424.601,-39.736,0
chr06	25636213	.	C	G	155906	PASS	AB=0.613546;ABP=396.523;AC=137;AF=0.728723;AN=188;AO=7338;CIGAR=1X;DP=8722;DPB=8722;DPRA=93.7742;EPP=15893.9;EPPR=2971.44;GTI=6;LEN=1;MEANALT=1.09677;MQM=59.5108;MQMR=59.7062;NS=94;NUMALT=1;ODDS=1.0993;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=260235;QR=49013;RO=1375;RPL=5;RPP=15893.9;RPPR=2971.44;RPR=7333;RUN=1;SAF=0;SAP=15937.3;SAR=7338;SRF=0;SRP=2988.78;SRR=1375;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:10,22:10:360:22:756:-58.7218,0,-23.1113	0/1:120:43,77:43:1544:77:2742:-210.866,0,-103.121	0/1:90:33,57:33:1171:57:2039:-156.669,0,-78.604	1/1:224:0,224:0:0:224:7965:-716.85,-67.4307,0	1/1:102:0,102:0:0:102:3640:-327.798,-30.7051,0	1/1:118:0,117:0:0:117:4129:-371.358,-35.2205,0	1/1:168:0,168:0:0:168:5973:-537.493,-50.573,0	0/1:85:42,43:42:1489:43:1536:-112.639,0,-108.705	0/1:61:15,46:15:540:46:1626:-128.191,0,-30.5655	0/1:68:26,42:26:936:42:1469:-111.784,0,-64.0588	0/1:39:15,24:15:540:24:855:-65.2107,0,-37.1964	1/1:59:0,59:0:0:59:2085:-187.902,-17.7608,0	0/1:49:26,23:26:924:23:819:-59.2729,0,-68.7167	0/1:53:30,23:30:1072:23:817:-57.7563,0,-80.8333	1/1:36:0,36:0:0:36:1273:-114.78,-10.8371,0	1/1:35:0,35:0:0:35:1258:-113.506,-10.5361,0	0/1:57:22,35:22:783:35:1238:-94.556,0,-53.581	1/1:49:0,49:0:0:49:1735:-156.434,-14.7505,0	0/1:29:17,12:17:604:12:428:-30.1151,0,-45.9411	0/1:178:71,107:71:2531:107:3798:-288.413,0,-174.458	0/1:109:50,59:50:1774:59:2071:-153.835,0,-127.125	1/1:131:0,131:0:0:131:4606:-414.324,-39.4349,0	0/1:79:14,65:14:500:65:2327:-185.477,0,-21.5486	1/1:98:1,97:1:36:97:3453:-307.004,-25.9027,0	0/1:19:4,15:4:144:15:527:-42.0406,0,-7.58933	1/1:331:0,331:0:0:331:11700:-1051.63,-99.6409,0	0/1:148:63,85:63:2247:85:3028:-228.169,0,-157.908	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	0/1:217:90,127:90:3206:127:4522:-341.168,0,-223.432	0/1:101:46,54:46:1643:54:1909:-141.622,0,-117.501	0/1:191:45,146:45:1597:146:5139:-405.109,0,-86.5192	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:63:0,63:0:0:63:2220:-200.055,-18.9649,0	1/1:12:0,12:0:0:12:419:-38.0427,-3.61236,0	0/1:8:2,6:2:63:6:212:-17.0166,0,-3.57491	1/1:38:0,38:0:0:38:1309:-117.992,-11.4391,0	0/1:163:78,84:78:2769:84:2980:-219.245,0,-200.319	1/1:287:0,286:0:0:286:10097:-908.021,-86.0946,0	0/1:62:25,37:25:900:37:1317:-100.164,0,-62.6548	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:105:17,88:17:608:88:3147:-251.815,0,-23.4392	1/1:33:0,33:0:0:33:1188:-107.215,-9.93399,0	0/1:149:49,100:49:1764:100:3556:-275.38,0,-114.19	0/1:49:24,25:24:856:25:896:-66.2052,0,-62.6106	1/1:46:0,46:0:0:46:1605:-144.712,-13.8474,0	1/1:130:0,130:0:0:130:4627:-416.297,-39.1339,0	0/1:70:39,31:39:1400:31:1103:-78.4903,0,-105.224	1/1:117:0,117:0:0:117:4122:-370.561,-35.2205,0	1/1:112:0,112:0:0:112:3979:-358.27,-33.7154,0	0/1:91:41,50:41:1472:50:1763:-131.231,0,-105.38	1/1:202:0,202:0:0:202:7197:-647.759,-60.8081,0	0/0:12:11,1:11:396:1:36:0,-0.0166801,-32.3871	1/1:161:0,161:0:0:161:5739:-516.58,-48.4658,0	0/1:69:14,55:14:487:55:1957:-155.629,0,-23.3881	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:132:31,101:31:1108:101:3563:-280.634,0,-60.2858	1/1:53:0,53:0:0:53:1874:-168.931,-15.9546,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	1/1:68:1,67:1:36:67:2375:-210.388,-16.8718,0	0/1:83:19,63:19:684:63:2248:-177.664,0,-36.9719	1/1:145:1,144:1:36:144:5110:-456.409,-40.0537,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:189:0,189:0:0:189:6717:-603.502,-56.8947,0	1/1:210:3,207:3:104:207:7378:-654.337,-53.5135,0	0/1:48:20,27:20:720:27:959:-72.1029,0,-50.6159	0/1:53:23,30:23:813:30:1066:-80.285,0,-57.5268	1/1:283:0,282:0:0:282:10004:-898.876,-84.8905,0	1/1:118:0,117:0:0:117:4102:-368.708,-35.2205,0	1/1:27:0,27:0:0:27:942:-85.0827,-8.12781,0	1/1:45:0,45:0:0:45:1596:-143.829,-13.5464,0	1/1:74:0,74:0:0:74:2584:-232.786,-22.2762,0	0/1:15:7,8:7:248:8:284:-21.3879,0,-18.1487	1/1:137:1,136:1:36:136:4828:-431.008,-37.6428,0	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0474	0/1:171:46,124:46:1648:124:4406:-345.028,0,-97.0471	1/1:183:0,183:0:0:183:6520:-586.344,-55.0885,0	1/1:158:0,158:0:0:158:5602:-504.18,-47.5627,0	1/1:114:2,112:2:72:112:3986:-352.067,-27.4807,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:96:1,95:1:36:95:3366:-299.49,-25.3006,0	1/1:165:0,165:0:0:165:5879:-529.153,-49.67,0	1/1:212:0,212:0:0:212:7578:-681.945,-63.8184,0	0/1:68:31,37:31:1096:37:1306:-97.3652,0,-78.35	1/1:44:0,44:0:0:44:1576:-142.121,-13.2453,0	0/1:54:36,18:36:1281:18:628:-40.5713,0,-99.3333	0/1:128:57,71:57:2012:71:2501:-186.283,0,-142.809	0/1:28:14,14:14:504:14:500:-36.8909,0,-37.2693	1/1:68:0,68:0:0:68:2417:-217.746,-20.47,0	1/1:43:0,43:0:0:43:1511:-136.206,-12.9443,0	0/1:29:13,16:13:455:16:557:-41.7211,0,-32.5521	0/1:70:26,44:26:905:44:1561:-119.692,0,-60.6859	0/1:48:32,16:32:1139:16:572:-37.364,0,-88.3666	1/1:136:0,136:0:0:136:4791:-430.663,-40.9401,0	1/1:67:0,67:0:0:67:2376:-213.883,-20.169,0
chr06	25636230	.	G	C	19785.2	PASS	AB=0.383776;ABP=422.46;AC=51;AF=0.271277;AN=188;AO=1395;CIGAR=1X;DP=8882;DPB=8882;DPRA=0.719172;EPP=3032.21;EPPR=15767.2;GTI=7;LEN=1;MEANALT=1.07143;MQM=59.6939;MQMR=59.5;NS=94;NUMALT=1;ODDS=1.27664;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49846;QR=267528;RO=7482;RPL=1395;RPP=3032.21;RPPR=15767.2;RPR=0;RUN=1;SAF=0;SAP=3032.21;SAR=1395;SRF=0;SRP=16250;SRR=7482;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:21,11:21:748:11:392:-25.9871,0,-58.011	0/1:124:79,44:79:2836:44:1561:-103.386,0,-216.71	0/1:91:58,33:58:2057:33:1188:-79.8349,0,-157.993	0/0:227:227,0:227:8141:0:0:0,-68.3338,-732.683	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.031	0/0:120:120,0:120:4277:0:0:0,-36.1236,-384.87	0/0:168:168,0:168:6015:0:0:0,-50.573,-540.938	0/1:85:43,42:43:1532:42:1476:-107.534,0,-112.418	0/1:64:47,17:47:1679:17:597:-34.782,0,-132.084	0/1:67:41,26:41:1468:26:936:-64.3598,0,-111.447	0/1:39:23,16:23:828:16:572:-40.0733,0,-63.1039	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.879	0/1:49:23,26:23:819:26:927:-68.9864,0,-59.2729	0/1:57:27,30:27:963:30:1080:-80.3499,0,-69.6822	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.051	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.923	0/1:59:36,23:36:1288:23:815:-55.8568,0,-98.4546	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.281	0/1:29:12,17:12:432:17:612:-46.659,0,-30.4775	0/1:179:106,72:106:3760:72:2569:-177.515,0,-284.629	0/1:110:59,51:59:2116:51:1820:-130.963,0,-157.582	0/0:132:132,0:132:4720:0:0:0,-39.736,-424.527	0/1:78:64,13:64:2300:13:438:-16.1959,0,-183.019	0/0:104:103,1:103:3687:1:36:0,-27.7088,-327.654	0/1:19:15,4:15:540:4:144:-7.58933,0,-43.217	0/0:336:336,0:336:12017:0:0:0,-101.146,-1080.77	0/1:149:87,62:87:3120:62:2232:-156.147,0,-235.969	0/1:24:14,10:14:504:10:356:-25.1565,0,-38.4734	0/1:220:130,90:130:4660:90:3228:-224.508,0,-352.725	0/1:104:57,47:57:2033:47:1677:-119.833,0,-151.888	0/1:201:152,49:152:5448:49:1752:-97.4547,0,-429.678	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.357	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1926	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.167	0/1:165:87,78:87:3116:78:2808:-203.282,0,-230.935	0/0:293:292,0:292:10439:0:0:0,-87.9008,-938.124	0/1:62:37,25:37:1328:25:900:-62.6572,0,-101.113	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:104:87,17:87:3120:17:601:-23.1109,0,-249.69	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.88	0/1:157:107,50:107:3809:50:1792:-114.301,0,-295.727	0/1:49:25,24:25:896:24:864:-63.3321,0,-66.2052	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.586	0/0:134:134,0:134:4808:0:0:0,-40.338,-431.349	0/1:70:30,40:30:1076:40:1428:-107.744,0,-76.0562	0/0:121:121,0:121:4306:0:0:0,-36.4246,-386.517	0/0:115:115,0:115:4090:0:0:0,-34.6184,-368.195	0/1:93:51,42:51:1832:42:1508:-108.016,0,-137.067	0/0:203:203,0:203:7244:0:0:0,-61.1091,-651.982	1/1:12:1,11:1:36:11:396:-32.3871,-0.0166803,0	0/0:163:162,1:162:5794:1:36:0,-45.4787,-517.939	0/1:71:55,15:55:1967:15:532:-26.7817,0,-155.872	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:135:103,32:103:3670:32:1144:-62.6213,0,-289.835	0/0:56:56,0:56:1978:0:0:0,-16.8577,-178.287	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:70:70,0:70:2478:0:0:0,-21.0721,-223.265	0/1:82:63,19:63:2264:19:684:-37.2059,0,-179.338	0/0:148:147,1:147:5276:1:36:0,-40.9568,-471.339	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:190:190,0:190:6783:0:0:0,-57.1957,-609.706	0/0:217:214,3:214:7678:3:104:0,-55.6207,-680.81	0/1:49:28,21:28:1008:21:744:-52.5326,0,-76.2674	0/1:54:31,23:31:1116:23:815:-57.3737,0,-84.4626	0/0:288:288,0:288:10321:0:0:0,-86.6966,-926.608	0/0:119:119,0:119:4268:0:0:0,-35.8226,-383.849	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2153	0/0:47:47,0:47:1664:0:0:0,-14.1484,-149.885	0/0:75:75,0:75:2682:0:0:0,-22.5772,-241.564	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:139:138,1:138:4914:1:36:0,-38.2449,-438.735	0/1:36:18,18:18:640:18:644:-47.4453,0,-46.7692	0/1:173:128,45:128:4549:45:1597:-91.913,0,-357.336	0/0:185:185,0:185:6607:0:0:0,-55.6905,-593.911	0/0:160:160,0:160:5731:0:0:0,-48.1648,-515.776	0/0:115:113,2:113:4040:2:72:0,-27.7817,-356.935	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:96:94,2:94:3368:2:72:0,-22.1094,-296.524	0/0:167:167,0:167:5974:0:0:0,-50.272,-537.671	0/0:222:222,0:222:7921:0:0:0,-66.8287,-712.801	0/1:70:39,31:39:1400:31:1108:-78.9346,0,-105.222	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.36	0/1:54:19,35:19:672:35:1252:-96.7295,0,-44.5326	0/1:130:71,59:71:2547:59:2116:-151.563,0,-190.247	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2528	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.032	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.444	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7415	0/1:73:46,27:46:1639:27:960:-64.7365,0,-125.808	0/1:50:17,33:17:612:33:1173:-90.8217,0,-40.3619	0/0:137:137,0:137:4873:0:0:0,-41.2411,-438.004	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.117
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chr06	26068123	.	C	A	43887.4	PASS	AB=0.549256;ABP=99.2719;AC=48;AF=0.258065;AN=186;AO=2533;CIGAR=1X;DP=8974;DPB=8974;DPRA=1.19839;EPP=5442.72;EPPR=7277.51;GTI=2;LEN=1;MEANALT=1.06667;MQM=58.7138;MQMR=56.5352;NS=93;NUMALT=1;ODDS=0.253108;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90621;QR=229103;RO=6435;RPL=2526;RPP=5442.72;RPPR=7277.51;RPR=7;RUN=1;SAF=2533;SAP=5503.35;SAR=0;SRF=6435;SRP=13976.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:11,14:11:388:14:504:-38.058,0,-27.6875	0/1:156:67,89:67:2400:89:3176:-238.979,0,-169.202	0/1:116:49,67:49:1752:67:2396:-180.887,0,-123.003	0/0:230:229,0:229:8153:0:0:0,-68.9359,-732.678	0/0:84:83,1:83:2954:1:36:0,-21.6887,-262.37	0/0:44:44,0:44:1559:0:0:0,-13.2453,-140.555	0/0:60:59,1:59:2100:1:36:0,-14.5591,-185.173	0/1:194:87,107:87:3095:107:3841:-287.21,0,-220.231	0/1:35:17,18:17:612:18:648:-48.1034,0,-44.861	0/1:114:55,59:55:1963:59:2100:-154.743,0,-142.368	0/1:78:40,38:40:1427:38:1366:-99.5433,0,-104.948	0/0:73:73,0:73:2610:0:0:0,-21.9752,-234.998	0/1:62:27,35:27:959:35:1260:-95.0233,0,-67.856	0/1:100:46,54:46:1643:54:1940:-144.693,0,-117.854	0/0:69:69,0:69:2440:0:0:0,-20.7711,-219.738	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.367	0/1:92:41,51:41:1459:51:1832:-137.02,0,-103.377	0/0:61:61,0:61:2192:0:0:0,-18.3628,-196.757	0/1:48:31,17:31:1112:17:612:-40.9127,0,-85.8382	0/1:156:58,98:58:2068:98:3501:-268.207,0,-139.235	0/1:103:43,60:43:1535:60:2129:-160.077,0,-106.591	0/0:131:131,0:131:4653:0:0:0,-39.4349,-418.188	0/1:38:12,26:12:423:26:921:-71.6971,0,-26.9435	0/0:56:53,3:53:1900:3:108:0,-6.7857,-160.972	0/1:75:27,48:27:968:48:1702:-130.81,0,-64.8201	0/0:245:245,0:245:8719:0:0:0,-73.7523,-783.056	0/1:173:89,84:89:3155:84:2996:-217.453,0,-231.813	0/1:41:20,21:20:720:21:756:-56.0081,0,-52.6798	0/1:281:129,152:129:4624:152:5433:-403.025,0,-331.15	0/1:234:106,127:106:3786:127:4536:-337.427,0,-270.059	0/1:89:36,53:36:1292:53:1908:-145.172,0,-89.5429	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3551	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09212	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:218:113,105:113:4032:105:3769:-273.484,0,-296.614	0/0:248:248,0:248:8787:0:0:0,-74.6554,-789.675	0/1:100:45,55:45:1611:55:1976:-147.954,0,-115.047	0/1:2:1,1:1:36:1:21:-1.49783,0,-2.99362	0/1:152:69,82:69:2468:82:2898:-215.044,0,-176.307	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.504	0/1:136:67,69:67:2381:69:2473:-181.741,0,-173.29	0/1:74:45,29:45:1620:29:1040:-71.5728,0,-123.639	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.5	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.26	0/1:140:58,82:58:2045:82:2944:-222.68,0,-142.119	0/0:220:220,0:220:7840:0:0:0,-66.2266,-704.598	0/0:93:91,1:91:3253:1:36:0,-24.5423,-289.138	0/1:223:105,117:105:3755:117:4192:-310.149,0,-270.372	0/0:102:101,0:101:3586:0:0:0,-30.404,-322.106	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.92948	0/0:120:120,0:120:4235:0:0:0,-36.1236,-380.966	0/1:58:13,45:13:468:45:1620:-128.569,0,-24.9629	0/1:6:2,4:2:68:4:140:-11.1384,0,-4.6499	0/1:114:55,59:55:1953:59:2124:-157.063,0,-141.572	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.8763	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0188	0/1:77:30,47:30:1063:47:1677:-128.014,0,-72.3295	0/0:132:131,1:131:4663:1:27:0,-37.0773,-416.428	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.56275	0/0:189:188,1:188:6667:1:36:0,-53.2964,-595.658	0/0:227:216,11:216:7664:11:377:0,-34.1363,-654.045	0/1:93:42,51:42:1487:51:1819:-135.314,0,-105.997	0/1:149:69,80:69:2450:80:2872:-213.835,0,-175.573	0/0:100:100,0:100:3514:0:0:0,-30.103,-315.89	0/0:109:108,1:108:3807:1:36:0,-29.214,-338.849	0/0:32:32,0:32:1111:0:0:0,-9.63296,-100.171	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.553	0/0:91:91,0:91:3248:0:0:0,-27.3937,-292.135	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.87391	0/0:99:99,0:99:3534:0:0:0,-29.802,-317.888	0/1:65:26,39:26:932:39:1400:-106.71,0,-64.597	0/1:101:37,64:37:1324:64:2296:-176.402,0,-88.7998	0/0:117:117,0:117:4160:0:0:0,-35.2205,-374.15	0/0:189:188,1:188:6707:1:36:0,-53.3737,-599.401	0/0:171:170,1:170:6041:1:36:0,-47.8779,-539.277	0/1:11:3,8:3:104:8:288:-22.9483,0,-6.38988	0/0:111:111,0:111:3944:0:0:0,-33.4143,-354.98	0/0:118:118,0:118:4191:0:0:0,-35.5215,-377.045	0/0:173:172,1:172:6139:1:36:0,-48.5048,-547.866	0/1:103:49,54:49:1760:54:1940:-143.786,0,-127.458	0/0:70:70,0:70:2485:0:0:0,-21.0721,-223.688	0/1:93:39,54:39:1392:54:1940:-146.788,0,-97.435	0/1:129:60,69:60:2130:69:2465:-183.131,0,-152.694	0/1:46:24,22:24:864:22:783:-56.8873,0,-64.2034	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.054	0/0:75:75,0:75:2687:0:0:0,-22.5772,-241.953	0/1:55:25,30:25:892:30:1076:-80.516,0,-63.9301	0/1:114:54,60:54:1928:60:2139:-158.329,0,-139.127	0/1:72:23,49:23:820:49:1760:-136.989,0,-52.2378	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.531	0/0:100:99,1:99:3524:1:36:0,-26.5138,-313.425
chr06	27090494	.	G	A	59266.8	PASS	AB=0.518336;ABP=8.34568;AC=141;AF=0.75;AN=188;AO=2836;CIGAR=1X;DP=3718;DPB=3718;DPRA=0;EPP=6161.31;EPPR=1918.25;GTI=2;LEN=1;MEANALT=1;MQM=59.9972;MQMR=60;NS=94;NUMALT=1;ODDS=0.428717;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100933;QR=31295;RO=882;RPL=2836;RPP=6161.31;RPPR=1918.25;RPR=0;RUN=1;SAF=2836;SAP=6161.31;SAR=0;SRF=882;SRP=1918.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:10,14:10:343:14:502:-38.2925,0,-23.9758	0/1:42:15,27:15:540:27:960:-74.073,0,-36.2933	0/1:84:37,47:37:1328:47:1664:-124.761,0,-94.5357	1/1:61:0,61:0:0:61:2172:-195.745,-18.3628,0	1/1:18:0,18:0:0:18:636:-57.568,-5.41854,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:59:29,30:29:1036:30:1076:-79.3921,0,-75.7931	0/1:58:18,40:18:640:40:1396:-108.475,0,-40.4696	0/1:46:19,27:19:684:27:960:-72.8689,0,-48.0429	0/1:28:11,17:11:387:17:612:-46.9846,0,-26.7371	1/1:73:0,73:0:0:73:2576:-232.089,-21.9752,0	0/1:54:27,27:27:935:27:964:-70.8212,0,-68.2065	0/1:36:15,21:15:519:21:748:-56.8082,0,-36.1996	1/1:47:0,47:0:0:47:1679:-151.396,-14.1484,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:28:9,19:9:320:19:675:-52.6488,0,-20.7135	0/1:61:34,27:34:1212:27:968:-69.0745,0,-91.0235	1/1:36:0,36:0:0:36:1281:-115.591,-10.8371,0	0/1:23:13,10:13:460:10:360:-25.8206,0,-34.8117	1/1:21:1,20:1:32:20:704:-60.4839,-3.12232,0	0/1:21:9,12:9:324:12:417:-31.5386,0,-23.1842	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	0/1:111:52,59:52:1843:59:2095:-155.405,0,-132.735	0/1:21:14,7:14:495:7:244:-15.9778,0,-38.5614	0/1:80:40,40:40:1427:40:1411:-103.204,0,-104.644	0/1:64:33,31:33:1180:31:1104:-80.4047,0,-87.2421	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:12:7,5:7:244:5:180:-12.9397,0,-18.6871	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:152:76,76:76:2685:76:2712:-198.568,0,-196.138	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:24:11,13:11:396:13:449:-33.5128,0,-28.758	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:36:22,14:22:788:14:504:-34.861,0,-60.4077	1/1:22:0,22:0:0:22:768:-69.4404,-6.62266,0	0/1:47:31,16:31:1108:16:576:-38.0266,0,-85.8826	0/1:23:10,13:10:360:13:462:-34.9925,0,-25.8206	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:61:0,61:0:0:61:2163:-194.937,-18.3628,0	0/1:54:25,29:25:881:29:1017:-75.5852,0,-63.3502	1/1:67:0,67:0:0:67:2380:-214.459,-20.169,0	1/1:43:0,43:0:0:43:1521:-137.181,-12.9443,0	0/1:30:17,13:17:597:13:460:-32.7045,0,-45.0252	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:45:0,45:0:0:45:1589:-143.298,-13.5464,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:60:31,29:31:1092:29:1032:-75.1317,0,-80.5278	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	1/1:80:1,79:1:36:79:2827:-251.07,-20.4841,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:62:0,62:0:0:62:2212:-199.345,-18.6639,0	1/1:21:0,21:0:0:21:721:-65.2068,-6.32163,0	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	0/1:28:10,18:10:351:18:648:-50.223,0,-23.4978	1/1:53:0,53:0:0:53:1883:-169.746,-15.9546,0	1/1:67:0,67:0:0:67:2389:-215.266,-20.169,0	1/1:20:0,20:0:0:20:704:-63.6845,-6.0206,0	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:79:0,79:0:0:79:2802:-252.42,-23.7814,0	0/1:48:28,20:28:981:20:716:-50.3183,0,-74.1516	0/1:63:34,29:34:1208:29:1017:-72.8749,0,-90.0612	1/1:79:0,79:0:0:79:2805:-252.689,-23.7814,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:59:0,59:0:0:59:2100:-189.27,-17.7608,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	0/1:41:18,23:18:635:23:819:-61.6893,0,-45.1347	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	0/1:31:14,17:14:500:17:597:-44.7249,0,-36.0042	0/1:77:32,45:32:1144:45:1616:-122.551,0,-80.0902	0/1:16:7,9:7:243:9:305:-22.9607,0,-17.391	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/1:21:9,12:9:320:12:423:-32.0834,0,-22.8207	0/1:75:39,36:39:1374:36:1282:-93.1058,0,-101.38	0/1:36:22,14:22:775:14:504:-34.861,0,-59.2341	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:56:0,56:0:0:56:1966:-177.214,-16.8577,0
chr06	27487371	.	G	C	128372	PASS	AB=0.488575;ABP=8.07123;AC=140;AF=0.744681;AN=188;AO=6171;CIGAR=1X;DP=8484;DPB=8484;DPRA=18.2344;EPP=13403.2;EPPR=4995.23;GTI=2;LEN=1;MEANALT=1.13978;MQM=59.9927;MQMR=59.9913;NS=94;NUMALT=1;ODDS=0.85432;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220538;QR=82150;RO=2299;RPL=0;RPP=13403.2;RPPR=4995.23;RPR=6171;RUN=1;SAF=6171;SAP=13403.2;SAR=0;SRF=2299;SRP=4995.23;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:24,17:24:860:17:600:-41.987,0,-65.3796	0/1:108:54,54:54:1921:54:1904:-139.124,0,-140.654	0/1:83:33,50:33:1184:50:1800:-137.297,0,-81.8828	1/1:179:0,178:0:0:178:6362:-572.311,-53.5833,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	1/1:108:0,107:0:0:107:3823:-343.907,-32.2102,0	0/1:172:89,82:89:3154:82:2928:-211.919,0,-232.248	0/1:104:60,44:60:2137:44:1576:-110.824,0,-161.289	0/1:92:47,44:47:1672:44:1565:-113.386,0,-123.014	0/1:77:39,38:39:1388:38:1368:-100.242,0,-102.04	1/1:80:0,80:0:0:80:2843:-256.106,-24.0824,0	0/1:84:41,43:41:1457:43:1544:-113.966,0,-106.137	0/1:103:44,59:44:1576:59:2103:-158.533,0,-111.125	1/1:105:0,105:0:0:105:3764:-338.959,-31.6082,0	1/1:65:0,65:0:0:65:2325:-209.507,-19.567,0	0/1:111:54,57:54:1940:57:2039:-150.367,0,-141.462	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	0/1:63:34,29:34:1224:29:1031:-74.1377,0,-91.5022	0/1:120:71,49:71:2552:49:1724:-119.318,0,-193.806	0/1:107:60,47:60:2139:47:1671:-118.467,0,-160.567	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:100:35,65:35:1248:65:2320:-178.958,0,-82.5219	1/1:157:5,152:5:180:152:5408:-470.302,-30.7096,0	0/1:52:21,31:21:737:31:1108:-84.3774,0,-50.9971	1/1:216:0,215:0:0:215:7692:-691.955,-64.7215,0	0/1:141:79,62:79:2798:62:2212:-156.9,0,-209.613	0/1:48:24,24:24:860:24:860:-63.2724,0,-63.2724	0/1:210:109,101:109:3912:101:3604:-261.351,0,-289.056	0/1:110:65,45:65:2283:45:1612:-112.257,0,-172.614	0/1:143:80,63:80:2845:63:2248:-159.536,0,-213.24	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:240:-21.9347,-2.10721,0	0/1:312:157,155:157:5629:155:5538:-404.623,0,-412.807	1/1:148:0,148:0:0:148:5292:-476.416,-44.5524,0	0/1:70:38,32:38:1368:32:1144:-82.1974,0,-102.349	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:118:58,60:58:2088:60:2148:-158.066,0,-152.668	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:94:46,48:46:1633:48:1719:-126.698,0,-118.96	0/1:100:48,52:48:1728:52:1872:-138.656,0,-125.702	1/1:98:0,97:0:0:97:3480:-313.051,-29.1999,0	1/1:42:0,42:0:0:42:1501:-135.385,-12.6433,0	0/1:113:57,56:57:2044:56:1993:-145.627,0,-150.215	1/1:126:0,126:0:0:126:4528:-407.685,-37.9298,0	1/1:68:0,66:0:0:66:2356:-211.939,-19.868,0	0/1:168:73,95:73:2612:95:3394:-255.103,0,-184.755	1/1:130:0,129:0:0:129:4616:-415.244,-38.8329,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:72:1,71:1:36:71:2516:-223.092,-18.0759,0	0/1:43:20,23:20:716:23:824:-61.539,0,-51.8234	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:91:60,31:60:2140:31:1108:-72.6373,0,-165.474	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:82:42,39:42:1493:39:1404:-101.916,0,-109.919	1/1:101:0,101:0:0:101:3616:-325.646,-30.404,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:129:0,129:0:0:129:4611:-415.154,-38.8329,0	1/1:256:5,250:5:180:250:8928:-786.954,-60.5704,0	0/1:77:31,45:31:1100:45:1600:-121.052,0,-76.0153	0/1:75:39,36:39:1400:36:1292:-94.0065,0,-103.722	1/1:162:1,161:1:36:161:5780:-516.714,-45.1686,0	1/1:69:2,67:2:72:67:2400:-209.392,-13.9343,0	1/1:35:1,34:1:36:34:1214:-105.968,-6.93778,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	1/1:127:0,127:0:0:127:4556:-410.205,-38.2308,0	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	1/1:24:0,24:0:0:24:844:-76.2789,-7.22472,0	0/1:72:36,36:36:1284:36:1288:-94.5494,0,-94.1893	0/1:221:118,103:118:4217:103:3670:-263.977,0,-313.182	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	1/1:87:0,87:0:0:87:3098:-279.047,-26.1896,0	1/1:91:0,91:0:0:91:3268:-294.34,-27.3937,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:96:1,95:1:36:95:3388:-301.538,-25.3006,0	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	1/1:178:0,178:0:0:178:6352:-571.773,-53.5833,0	0/1:118:59,59:59:2120:59:2107:-154.377,0,-155.547	1/1:107:0,107:0:0:107:3835:-345.345,-32.2102,0	0/1:117:51,66:51:1836:66:2355:-176.988,0,-130.3	0/1:199:88,110:88:3152:110:3943:-295.069,0,-223.941	0/1:54:24,30:24:864:30:1080:-81.2576,0,-61.8269	1/1:98:0,98:0:0:98:3501:-315.297,-29.5009,0	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/1:42:33,9:33:1175:9:324:-16.8626,0,-93.4137	0/1:88:42,46:42:1508:46:1652:-122.478,0,-109.524	0/1:106:74,32:74:2652:32:1144:-71.3603,0,-207.017	1/1:67:0,67:0:0:67:2373:-213.828,-20.169,0	1/1:120:0,119:0:0:119:4246:-381.959,-35.8226,0
chr06	27626118	.	TCCA	GCCG,GCCA	169254	PASS	AB=0.5535,0.440259;ABP=114.537,142.077;AC=137,49;AF=0.736559,0.263441;AN=186;AO=7542,1995;CIGAR=1X2M1X,1X3M;DP=9580;DPB=9580.75;DPRA=52.0543,1.09813;EPP=16380.3,4335.1;EPPR=16.0391;GTI=3;LEN=4,1;MEANALT=1.92391,2.36842;MQM=33.5841,40.2065;MQMR=46.3333;NS=93;NUMALT=2;ODDS=2.41729;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=104,0;PQR=0;PRO=0;QA=262569,69809;QR=181;RO=6;RPL=0,0;RPP=16380.3,4335.1;RPPR=4.45795;RPR=7542,1995;RUN=1,1;SAF=0,0;SAP=16380.3,4335.1;SAR=7542,1995;SRF=2;SRP=4.45795;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,35,17:0:0:35,17:1193,602:-130.295,-46.8476,-36.3116,-83.4549,0,-78.3374	1/2:88:0,45,43:0:0:45,43:1587,1505:-229,-118.325,-104.778,-110.998,0,-98.054	1/2:175:0,105,69:0:0:105,69:3648,2424:-446.219,-190.702,-159.094,-255.533,0,-234.762	1/1:222:0,222,0:0:0:222,0:7722,0:-617.229,-66.8287,0,-617.229,-66.8287,-617.229	1/1:77:0,74,2:0:0:74,2:2595,72:-210.937,-22.2762,0,-205.32,-16.6219,-204.718	1/1:37:0,37,0:0:0:37,0:1296,0:-101.787,-11.1381,0,-101.787,-11.1381,-101.787	1/1:96:0,96,0:0:0:96,0:3337,0:-264.213,-28.8989,0,-264.213,-28.8989,-264.213	1/2:130:0,76,52:0:0:76,52:2685,1794:-327.209,-140.509,-117.63,-186.731,0,-171.078	1/2:82:1,44,37:1:25:44,37:1530,1315:-208.401,-101.621,-90.3217,-105.208,0,-96.0175	1/2:74:0,28,45:0:0:28,45:981,1585:-194.145,-123.543,-115.115,-70.5662,0,-57.0199	1/2:81:0,36,43:0:0:36,43:1223,1523:-206.175,-119.021,-108.183,-87.1269,0,-74.1826	1/1:144:0,141,1:0:0:141,1:4847,36:-383.34,-42.4452,0,-380.438,-39.5059,-380.137	1/2:76:0,43,33:0:0:43,33:1490,1121:-191.149,-88.2973,-75.353,-103.168,0,-93.2338	1/2:80:1,38,40:1:36:38,40:1298,1378:-195.79,-103.926,-95.4245,-89.1867,0,-80.0843	1/1:91:0,91,0:0:0:91,0:3136,0:-252.64,-27.3937,0,-252.64,-27.3937,-252.64	1/1:88:0,88,0:0:0:88,0:3042,0:-247.086,-26.4906,0,-247.086,-26.4906,-247.086	1/2:35:0,12,23:0:0:12,23:420,816:-94.2756,-64.6799,-61.0676,-29.9158,0,-22.9922	1/1:44:0,44,0:0:0:44,0:1530,0:-120.473,-13.2453,0,-120.473,-13.2453,-120.473	1/2:42:0,27,15:0:0:27,15:947,527:-107.395,-41.5405,-33.4127,-66.1813,0,-61.6659	1/2:132:1,82,49:1:36:82,49:2885,1735:-338.625,-133.674,-110.388,-203.99,0,-190.639	1/2:200:0,105,95:0:0:105,95:3689,3331:-528.735,-259.867,-228.259,-269.197,0,-240.599	1/1:64:0,64,0:0:0:64,0:2241,0:-180.865,-19.2659,0,-180.865,-19.2659,-180.865	1/2:125:0,83,42:0:0:83,42:2855,1463:-315.277,-113.867,-88.8818,-201.734,0,-189.09	1/1:92:0,86,6:0:0:86,6:2976,212:-240.42,-25.8886,0,-223.729,-8.85745,-221.923	1/2:96:0,57,37:0:0:57,37:1975,1288:-243.354,-100.401,-83.2421,-142.957,0,-131.818	1/1:279:0,275,4:0:0:275,4:9596,144:-762.931,-82.7833,0,-751.569,-71.0728,-750.365	1/2:283:0,136,142:0:0:136,142:4714,4930:-726.265,-382.329,-341.389,-343.989,0,-301.243	1/2:30:0,10,20:0:0:10,20:340,670:-76.3778,-52.0921,-49.0818,-24.595,0,-18.5744	1/2:204:0,109,95:0:0:109,95:3799,3371:-536.135,-263.276,-230.463,-273.186,0,-244.589	1/2:103:1,68,32:1:36:68,32:2411,1115:-256.502,-83.401,-65.8693,-170.482,0,-163.787	1/2:109:0,68,40:0:0:68,40:2363,1391:-278.165,-108.233,-87.7629,-170.006,0,-157.965	1/1:1:0,1,0:0:0:1,0:22,0:-2.13648,-0.30103,0,-2.13648,-0.30103,-2.13648	1/1:32:0,32,0:0:0:32,0:1101,0:-89.9805,-9.63296,0,-89.9805,-9.63296,-89.9805	1/1:8:0,8,0:0:0:8,0:272,0:-22.0964,-2.40824,0,-22.0964,-2.40824,-22.0964	1/2:23:0,12,11:0:0:12,11:422,379:-59.5449,-29.9087,-26.2963,-29.9568,0,-26.6455	1/1:19:0,19,0:0:0:19,0:656,0:-52.2195,-5.71957,0,-52.2195,-5.71957,-52.2195	1/2:252:0,135,116:0:0:135,116:4678,4016:-644.091,-312.878,-272.239,-331.188,0,-296.269	1/1:125:0,125,0:0:0:125,0:4410,0:-355.95,-37.6288,0,-355.95,-37.6288,-355.95	1/2:83:0,46,37:0:0:46,37:1582,1297:-213.178,-102.357,-88.51,-111.143,0,-100.005	.:.:.:.:.:.:.:.	1/2:200:1,110,89:1:28:110,89:3869,3111:-519.071,-240.611,-209.716,-276.589,0,-252.015	1/1:43:0,42,0:0:0:42,0:1432,0:-116.862,-12.6433,0,-116.862,-12.6433,-116.862	1/2:118:0,87,31:0:0:87,31:3000,1079:-302.321,-84.0447,-57.8551,-218.605,0,-209.273	1/2:64:0,35,29:0:0:35,29:1206,1022:-165.262,-79.8654,-69.3294,-85.7191,0,-76.9893	1/1:84:0,84,0:0:0:84,0:2925,0:-234.99,-25.2865,0,-234.99,-25.2865,-234.99	1/1:130:0,130,0:0:0:130,0:4543,0:-361.673,-39.1339,0,-361.673,-39.1339,-361.673	1/2:108:0,59,49:0:0:59,49:2038,1713:-278.355,-134.666,-116.905,-144.011,0,-129.261	1/1:195:0,195,0:0:0:195,0:6761,0:-538.998,-58.7009,0,-538.998,-58.7009,-538.998	1/1:119:0,119,0:0:0:119,0:4074,0:-328.507,-35.8226,0,-328.507,-35.8226,-328.507	1/2:124:1,75,48:1:20:75,48:2644,1711:-320.96,-132.846,-111.448,-187.399,0,-174.13	1/1:174:0,172,0:0:0:172,0:6044,0:-481.761,-51.7772,0,-481.761,-51.7772,-481.761	1/2:8:0,2,6:0:0:2,6:72,216:-22.3225,-17.1935,-16.5915,-5.45443,0,-3.64825	1/1:276:0,275,1:0:0:275,1:9591,36:-756.97,-82.7833,0,-754.139,-79.6036,-753.838	1/2:60:0,36,23:0:0:36,23:1242,817:-152.254,-63.8331,-52.996,-88.4297,0,-81.506	1/2:11:0,9,2:0:0:9,2:320,72:-27.6659,-6.12296,-3.41369,-21.8871,0,-21.2851	1/2:200:0,109,91:0:0:109,91:3770,3187:-519.6,-248.275,-215.462,-271.65,0,-244.256	1/1:64:0,64,0:0:0:64,0:2193,0:-1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chr06	27709144	.	T	C	23336	PASS	AB=0.468872;ABP=28.9666;AC=48;AF=0.255319;AN=188;AO=1456;CIGAR=1X;DP=6947;DPB=6947;DPRA=0.838321;EPP=3164.67;EPPR=11898.3;GTI=3;LEN=1;MEANALT=1.0566;MQM=59.9712;MQMR=59.9949;NS=94;NUMALT=1;ODDS=1.0053;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51912;QR=196140;RO=5486;RPL=1456;RPP=3164.67;RPPR=11889.7;RPR=0;RUN=1;SAF=1456;SAP=3164.67;SAR=0;SRF=5485;SRP=11907;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:24,23:24:830:23:809:-58.9799,0,-60.8639	0/1:65:33,32:33:1165:32:1136:-82.9819,0,-85.5881	0/1:142:66,76:66:2350:76:2709:-201.306,0,-169.012	0/0:143:143,0:143:5118:0:0:0,-43.0473,-460.761	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/0:61:61,0:61:2187:0:0:0,-18.3628,-197.095	0/1:106:57,48:57:2044:48:1685:-119.949,0,-152.264	0/1:91:55,35:55:1971:35:1248:-85.3065,0,-150.349	0/1:26:17,9:17:599:9:324:-21.6791,0,-46.4113	0/1:35:10,25:10:356:25:892:-70.0636,0,-21.8452	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:64:35,29:35:1260:29:1044:-75.0089,0,-94.4396	0/1:55:30,25:30:1067:25:900:-64.7644,0,-79.7846	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:23:14,9:14:504:9:311:-21.4,0,-38.7744	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:31:15,16:15:536:16:563:-41.6672,0,-39.2429	0/1:142:73,69:73:2620:69:2480:-180.707,0,-193.301	0/1:113:67,46:67:2369:46:1622:-112.249,0,-179.451	0/0:121:121,0:121:4339:0:0:0,-36.4246,-390.684	0/1:62:36,26:36:1296:26:936:-65.8956,0,-98.2801	0/0:60:57,3:57:1989:3:108:0,-7.98663,-169.187	0/1:60:25,35:25:896:35:1237:-93.5705,0,-62.8986	0/0:199:197,2:197:7080:2:72:0,-53.0682,-630.419	0/1:158:84,74:84:3024:74:2656:-191.723,0,-224.827	0/1:24:17,7:17:597:7:248:-15.4395,0,-46.8314	0/1:145:75,70:75:2688:70:2516:-183.042,0,-198.515	0/1:87:42,45:42:1508:45:1612:-119.18,0,-109.825	0/1:48:19,29:19:684:29:1044:-79.8254,0,-47.4409	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07869	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:135:77,58:77:2772:58:2059:-144.942,0,-209.081	0/0:136:136,0:136:4847:0:0:0,-40.9401,-436.383	0/1:43:23,20:23:803:20:708:-51.1013,0,-59.6441	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:82:42,40:42:1512:40:1436:-104.853,0,-111.69	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:158:80,78:80:2850:78:2766:-201.616,0,-209.175	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/1:82:46,36:46:1629:36:1292:-91.8993,0,-122.212	0/0:208:208,0:208:7447:0:0:0,-62.6142,-670.274	0/0:69:69,0:69:2454:0:0:0,-20.7711,-221.114	0/1:75:38,37:38:1346:37:1309:-95.5241,0,-98.8614	0/0:119:119,0:119:4244:0:0:0,-35.8226,-382.138	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:162:162,0:162:5809:0:0:0,-48.7669,-522.92	0/1:45:25,20:25:881:20:712:-50.8603,0,-66.0595	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:140:86,54:86:3075:54:1932:-132.012,0,-234.834	0/0:17:16,0:16:576:0:0:0,-4.81648,-51.9374	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:59:31,28:31:1089:28:990:-71.6524,0,-80.5563	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/0:216:215,0:215:7699:0:0:0,-64.7214,-692.58	0/0:169:169,0:169:6044:0:0:0,-50.8741,-544.036	0/1:46:25,21:25:900:21:752:-54.1589,0,-67.4736	0/1:59:29,30:29:1036:30:1062:-78.1292,0,-75.7931	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/0:144:141,3:141:5059:3:108:0,-33.2731,-445.378	0/0:39:38,1:38:1355:1:36:0,-8.14189,-118.651	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/0:141:141,0:141:5043:0:0:0,-42.4452,-454.016	0/1:90:57,33:57:2048:33:1184:-79.7756,0,-157.499	0/1:83:37,45:37:1328:45:1607:-119.875,0,-94.778	0/0:168:168,0:168:5991:0:0:0,-50.573,-539.295	0/0:126:126,0:126:4503:0:0:0,-37.9298,-405.439	0/0:87:86,1:86:3071:1:36:0,-22.5913,-273.02	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/0:91:91,0:91:3250:0:0:0,-27.3937,-292.72	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.1	0/0:182:182,0:182:6522:0:0:0,-54.7875,-587.061	0/1:51:27,24:27:963:24:864:-62.73,0,-71.6334	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/1:31:23,8:23:816:8:279:-16.1156,0,-64.4298	0/1:114:68,46:68:2413:46:1608:-110.687,0,-183.108	0/1:24:11,13:11:381:13:468:-35.2349,0,-27.3959	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:79:45,34:45:1600:34:1212:-85.605,0,-120.509	0/1:46:11,35:11:396:35:1256:-99.4979,0,-22.1354	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976
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chr06	27828895	.	C	T	122254	PASS	AB=0.54019;ABP=47.3441;AC=139;AF=0.739362;AN=188;AO=5718;CIGAR=1X;DP=7192;DPB=7192;DPRA=31.2478;EPP=12419.5;EPPR=3199.42;GTI=4;LEN=1;MEANALT=1.02174;MQM=59.9134;MQMR=36.2554;NS=94;NUMALT=1;ODDS=0.755258;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204885;QR=52583;RO=1472;RPL=5718;RPP=12419.5;RPPR=3199.42;RPR=0;RUN=1;SAF=0;SAP=12419.5;SAR=5718;SRF=0;SRP=3199.42;SRR=1472;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:5,8:5:180:8:288:-22.354,0,-11.4789	0/1:60:27,33:27:953:33:1186:-88.973,0,-60.0737	0/1:61:25,36:25:877:36:1292:-98.2209,0,-52.4146	0/1:165:73,92:73:2624:92:3259:-243.844,0,-167.085	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:135:0,135:0:0:135:4833:-435.11,-40.6391,0	0/1:96:29,67:29:1032:67:2412:-188.437,0,-55.3101	1/1:69:0,69:0:0:69:2442:-220.032,-20.7711,0	0/1:140:83,57:83:2954:57:2033:-141.096,0,-201.297	1/1:48:0,48:0:0:48:1716:-154.456,-14.4494,0	0/1:108:46,62:46:1633:62:2228:-168.273,0,-99.4647	0/1:126:54,72:54:1944:72:2583:-194.789,0,-121.933	0/1:64:27,37:27:960:37:1328:-100.556,0,-60.5674	0/1:71:34,36:34:1212:36:1296:-95.512,0,-79.3564	1/1:65:0,65:0:0:65:2328:-209.779,-19.567,0	1/1:37:0,37:0:0:37:1328:-119.808,-11.1381,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:19:10,9:10:360:9:324:-23.7863,0,-24.0138	0/1:101:47,54:47:1688:54:1940:-144.472,0,-109.336	1/1:216:0,216:0:0:216:7734:-696.088,-65.0225,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:62:0,62:0:0:62:2218:-199.882,-18.6639,0	1/1:43:0,43:0:0:43:1525:-137.541,-12.9443,0	0/1:30:11,19:11:396:19:684:-52.8594,0,-24.2314	0/1:139:55,84:55:1972:84:3020:-230.187,0,-121.821	1/1:157:0,157:0:0:157:5644:-508.075,-47.2617,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:180:82,98:82:2940:98:3524:-263.167,0,-189.603	0/1:108:20,88:20:716:88:3145:-250.206,0,-26.3525	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.06403	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:235:0,235:0:0:235:8394:-755.444,-70.7421,0	0/1:36:17,19:17:612:19:684:-51.0532,0,-39.9679	0/1:25:10,15:10:360:15:540:-41.4108,0,-22.1378	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.03315	0/1:120:47,73:47:1684:73:2624:-200.283,0,-103.356	0/1:31:10,21:10:360:21:756:-59.0353,0,-20.6892	0/1:58:22,36:22:784:36:1291:-99.0341,0,-47.3032	0/1:76:41,35:41:1472:35:1260:-90.8272,0,-99.034	0/1:77:40,37:40:1432:37:1328:-96.6429,0,-95.3736	1/1:67:0,67:0:0:67:2389:-215.263,-20.169,0	1/1:51:0,51:0:0:51:1836:-165.061,-15.3525,0	0/1:109:58,51:58:2038:51:1828:-131.989,0,-136.371	1/1:70:0,70:0:0:70:2505:-225.701,-21.0721,0	1/1:99:0,99:0:0:99:3556:-320.246,-29.802,0	1/1:54:0,54:0:0:54:1933:-174.236,-16.2556,0	0/1:14:12,2:12:432:2:72:-2.6223,0,-31.6969	0/1:36:19,17:19:680:17:612:-44.5764,0,-45.8374	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.22126	0/1:119:69,50:69:2465:50:1792:-125.739,0,-168.327	0/1:17:10,7:10:360:7:252:-17.9114,0,-24.8022	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:13:0,13:0:0:13:465:-42.1881,-3.91339,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:117:0,117:0:0:117:4204:-378.539,-35.2205,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.21792	1/1:319:0,319:0:0:319:11422:-1027.76,-96.0286,0	1/1:153:7,146:7:244:146:5236:-450.695,-25.3909,0	0/1:40:19,21:19:665:21:756:-56.326,0,-43.3831	1/1:45:0,45:0:0:45:1597:-144.018,-13.5464,0	0/1:82:38,44:38:1356:44:1584:-118.167,0,-87.6089	0/1:88:47,41:47:1676:41:1472:-106.263,0,-112.619	0/1:22:12,10:12:432:10:356:-25.7586,0,-29.3367	1/1:66:0,66:0:0:66:2357:-212.387,-19.868,0	0/1:54:24,30:24:860:30:1069:-80.2647,0,-55.0114	0/1:11:3,8:3:108:8:288:-22.9561,0,-5.92594	1/1:87:0,87:0:0:87:3091:-277.309,-26.1896,0	0/1:165:93,72:93:3305:72:2584:-183.106,0,-223.364	1/1:147:0,147:0:0:147:5261:-473.354,-44.2514,0	1/1:216:0,216:0:0:216:7748:-697.348,-65.0225,0	0/1:14:6,8:6:216:8:288:-22.053,0,-14.1894	1/1:157:5,152:5:180:152:5468:-477.477,-32.4942,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:93:0,93:0:0:93:3340:-299.96,-27.9958,0	0/1:51:13,38:13:468:38:1364:-107.708,0,-22.5586	1/1:157:0,157:0:0:157:5641:-507.808,-47.2617,0	1/1:82:0,82:0:0:82:2952:-265.913,-24.6845,0	0/1:73:33,40:33:1184:40:1436:-107.245,0,-76.8251	0/1:66:33,33:33:1180:33:1184:-87.0003,0,-78.0934	0/1:135:54,81:54:1929:81:2882:-218.976,0,-119.369	1/1:29:0,29:0:0:29:1029:-92.92,-8.72987,0	1/1:96:0,96:0:0:96:3448:-310.527,-28.8989,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	0/1:23:14,9:14:504:9:324:-22.5822,0,-34.9739	0/1:72:39,33:39:1396:33:1188:-85.5544,0,-94.0338	0/1:57:36,21:36:1292:21:756:-51.2085,0,-89.9079	1/1:248:0,248:0:0:248:8881:-799.258,-74.6554,0	1/1:144:3,140:3:108:140:5013:-442.07,-34.1624,0
chr06	27957421	.	A	G	101847	PASS	AB=0.516507;ABP=10.6811;AC=141;AF=0.75;AN=188;AO=4847;CIGAR=1X;DP=6429;DPB=6429;DPRA=0;EPP=10484.8;EPPR=3412.27;GTI=1;LEN=1;MEANALT=1;MQM=59.8816;MQMR=59.9576;NS=94;NUMALT=1;ODDS=1.79134;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173223;QR=56684;RO=1582;RPL=5;RPP=10484.8;RPPR=3412.27;RPR=4842;RUN=1;SAF=4847;SAP=10528.1;SAR=0;SRF=1582;SRP=3438.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:117:55,62:55:1964:62:2205:-163.491,0,-141.815	0/1:53:17,36:17:593:36:1284:-99.9079,0,-37.7401	1/1:125:1,124:1:36:124:4436:-395.813,-34.0305,0	1/1:27:0,27:0:0:27:972:-87.7832,-8.12781,0	1/1:60:0,60:0:0:60:2156:-194.306,-18.0618,0	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	0/1:66:34,32:34:1220:32:1144:-83.4006,0,-90.2388	0/1:45:24,21:24:864:21:752:-54.4572,0,-64.5362	0/1:76:36,40:36:1292:40:1428:-105.939,0,-93.7055	0/1:64:35,29:35:1260:29:1044:-75.0089,0,-94.4396	1/1:55:0,55:0:0:55:1972:-177.753,-16.5567,0	0/1:67:39,28:39:1404:28:1000:-70.1464,0,-106.49	0/1:71:38,33:38:1368:33:1180:-85.1349,0,-102.048	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:64:25,39:25:900:39:1391:-106.221,0,-62.0551	1/1:49:0,49:0:0:49:1764:-159.033,-14.7505,0	0/1:31:15,16:15:536:16:576:-42.8421,0,-39.2429	0/1:79:33,46:33:1184:46:1648:-124.827,0,-83.0869	0/1:86:43,43:43:1548:43:1535:-112.508,0,-113.724	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	1/1:24:1,23:1:36:23:820:-70.5242,-3.62645,0	0/1:29:13,16:13:468:16:568:-42.722,0,-33.7298	1/1:210:0,210:0:0:210:7544:-678.971,-63.2163,0	0/1:129:59,70:59:2116:70:2491:-185.56,0,-151.876	0/1:37:17,20:17:600:20:720:-53.9907,0,-43.1911	0/1:282:120,162:120:4266:162:5812:-438.301,0,-299.227	0/1:135:75,60:75:2677:60:2148:-152.948,0,-200.165	0/1:104:63,41:63:2256:41:1468:-101.109,0,-171.996	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0	0/1:222:102,120:102:3656:120:4265:-317.2,0,-262.415	1/1:189:1,188:1:36:188:6731:-602.264,-53.2964,0	0/1:56:37,19:37:1332:19:680:-44.6715,0,-103.325	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/1:97:49,48:49:1764:48:1724:-126.245,0,-129.844	1/1:34:0,34:0:0:34:1204:-108.666,-10.235,0	0/1:63:20,43:20:716:43:1536:-119.566,0,-45.8028	0/1:44:18,26:18:648:26:906:-68.6081,0,-45.4066	1/1:73:0,73:0:0:73:2619:-235.714,-21.9752,0	1/1:35:0,35:0:0:35:1256:-113.339,-10.5361,0	0/1:63:28,35:28:996:35:1252:-94.0184,0,-70.99	1/1:122:1,121:1:36:121:4310:-384.476,-33.1274,0	1/1:114:0,114:0:0:114:4088:-368.105,-34.3174,0	0/1:123:53,70:53:1908:70:2499:-188.136,0,-134.971	1/1:105:0,105:0:0:105:3764:-338.952,-31.6082,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:80:0,80:0:0:80:2868:-258.354,-24.0824,0	0/1:32:20,12:20:716:12:432:-29.5882,0,-55.1348	0/1:24:9,15:9:324:15:540:-41.71,0,-22.2811	0/1:51:25,26:25:900:26:928:-68.4857,0,-65.9685	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:47:21,26:21:752:26:932:-70.0505,0,-53.8516	1/1:122:0,122:0:0:122:4380:-394.372,-36.7257,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:137:0,137:0:0:137:4879:-439.218,-41.2411,0	1/1:128:1,127:1:36:127:4513:-402.739,-34.9336,0	0/1:38:18,20:18:644:20:720:-53.6896,0,-46.8515	0/1:54:30,24:30:1072:24:856:-61.1055,0,-80.5368	1/1:52:2,50:2:72:50:1796:-155.086,-8.81684,0	1/1:69:4,65:4:144:65:2317:-195.474,-7.45745,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:56:0,56:0:0:56:1989:-179.28,-16.8577,0	1/1:100:0,100:0:0:100:3580:-322.353,-30.103,0	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	1/1:91:0,91:0:0:91:3221:-290.014,-27.3937,0	0/1:57:25,32:25:896:32:1140:-85.7487,0,-63.1729	0/1:131:66,65:66:2356:65:2293:-167.196,0,-172.864	1/1:82:0,82:0:0:82:2945:-265.282,-24.6845,0	1/1:85:0,85:0:0:85:3033:-273.088,-25.5876,0	1/1:111:0,111:0:0:111:3980:-358.386,-33.4143,0	0/1:10:6,4:6:216:4:144:-10.3024,0,-16.7802	1/1:58:1,57:1:36:57:2025:-178.923,-13.8615,0	1/1:49:1,48:1:36:48:1676:-147.51,-11.1522,0	1/1:141:0,141:0:0:141:5044:-454.104,-42.4452,0	0/1:123:58,65:58:2088:65:2328:-172.748,0,-151.163	1/1:44:1,43:1:36:43:1544:-135.653,-9.64705,0	0/1:70:36,34:36:1292:34:1216:-88.6745,0,-95.5117	0/1:133:69,64:69:2480:64:2286:-165.963,0,-183.416	0/1:50:28,22:28:1004:22:763:-53.934,0,-75.6244	1/1:60:1,59:1:36:59:2112:-185.49,-14.4635,0	1/1:62:0,62:0:0:62:2208:-198.981,-18.6639,0	0/1:26:6,20:6:216:20:720:-57.302,0,-11.9637	0/1:78:37,41:37:1328:41:1460:-108.205,0,-96.3419	0/1:61:37,24:37:1332:24:856:-58.9983,0,-101.817	1/1:66:0,66:0:0:66:2361:-212.745,-19.868,0	1/1:82:0,82:0:0:82:2931:-263.914,-24.6845,0
chr06	27983771	.	AGCCA	AGCCG	34992.8	PASS	AB=0.445677;ABP=104.693;AC=139;AF=0.739362;AN=188;AO=5970;CIGAR=4M1X;DP=8217;DPB=8220.2;DPRA=0;EPP=12966.7;EPPR=4773.74;GTI=0;LEN=1;MEANALT=1.45745;MQM=19.0705;MQMR=42.7082;NS=94;NUMALT=1;ODDS=1.65629;PAIRED=0;PAIREDR=0;PAO=8;PQA=278;PQR=0;PRO=0;QA=213684;QR=77930;RO=2197;RPL=0;RPP=12966.7;RPPR=4773.74;RPR=5970;RUN=1;SAF=5970;SAP=12966.7;SAR=0;SRF=2197;SRP=4773.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:20,14:20:708:14:496:-13.6756,0,-52.6267	0/1:160:72,88:72:2560:88:3135:-100.093,0,-177.501	0/1:200:107,92:107:3791:92:3296:-96.2034,0,-273.085	1/1:185:0,184:0:0:184:6562:-314.213,-55.3895,0	1/1:92:0,91:0:0:91:3257:-156.26,-27.3937,0	1/1:78:0,78:0:0:78:2800:-131.538,-23.4803,0	1/1:93:0,91:0:0:91:3260:-152.865,-27.3937,0	0/1:132:72,59:72:2530:59:2116:-61.4178,0,-181.828	0/1:71:31,40:31:1077:40:1440:-46.911,0,-73.543	0/1:106:55,51:55:1948:51:1832:-55.178,0,-139.807	0/1:29:18,11:18:640:11:396:-9.46468,0,-47.9464	1/1:37:0,36:0:0:36:1288:-60.7586,-10.8371,0	0/1:26:11,15:11:395:15:540:-18.0748,0,-27.2695	0/1:22:8,13:8:287:13:464:-16.546,0,-19.0798	1/1:24:1,22:1:36:22:773:-33.9469,-3.64733,0	1/1:21:0,20:0:0:20:712:-33.6305,-6.0206,0	0/1:31:22,9:22:786:9:324:-5.72837,0,-59.7397	1/1:22:0,22:0:0:22:788:-38.1716,-6.62266,0	0/1:24:15,8:15:526:8:288:-5.84369,0,-39.5591	0/1:206:122,84:122:4324:84:3005:-83.6479,0,-315.009	0/1:117:58,59:58:2064:59:2116:-66.0726,0,-146.904	1/1:169:0,169:0:0:169:6014:-284.027,-50.8741,0	0/1:92:41,51:41:1460:51:1832:-58.7202,0,-99.0382	1/1:94:6,88:6:215:88:3156:-130.182,-8.98095,0	0/1:91:55,36:55:1952:36:1288:-33.5224,0,-144.571	1/1:297:0,294:0:0:294:10560:-498.881,-88.5028,0	0/1:215:122,92:122:4343:92:3296:-90.9587,0,-317.372	0/1:19:9,10:9:324:10:360:-14.5559,0,-23.1527	0/1:325:197,128:197:6943:128:4570:-121.003,0,-509.76	0/1:144:86,58:86:3063:58:2084:-54.632,0,-224.353	0/1:154:104,50:104:3688:50:1796:-37.1831,0,-276.579	1/1:27:0,26:0:0:26:928:-44.0038,-7.82678,0	1/1:42:0,42:0:0:42:1496:-70.8483,-12.6433,0	1/1:20:0,20:0:0:20:716:-34.2253,-6.0206,0	0/1:16:7,9:7:242:9:324:-11.3019,0,-14.8021	1/1:29:0,29:0:0:29:1036:-48.9183,-8.72987,0	0/1:80:51,27:51:1823:27:972:-22.5321,0,-135.867	1/1:222:0,222:0:0:222:7911:-376.14,-66.8287,0	0/1:34:14,18:14:504:18:648:-21.1995,0,-34.8721	0/1:7:4,3:4:143:3:108:-3.18907,0,-10.8047	0/1:155:93,62:93:3293:62:2208:-59.6988,0,-241.444	1/1:30:0,28:0:0:28:1000:-51.8721,-8.42884,0	0/1:175:102,71:102:3601:71:2521:-69.6747,0,-261.52	0/1:30:11,19:11:391:19:684:-24.6187,0,-25.8176	1/1:20:0,20:0:0:20:720:-34.9218,-6.0206,0	1/1:102:0,102:0:0:102:3645:-175.312,-30.7051,0	0/1:95:50,45:50:1772:45:1616:-51.3853,0,-127.272	1/1:184:0,182:0:0:182:6528:-307.802,-54.7875,0	1/1:128:0,128:0:0:128:4592:-219.492,-38.5318,0	0/1:166:75,90:75:2657:90:3221:-108.268,0,-179.845	1/1:194:2,190:2:72:190:6778:-317.358,-51.3643,0	0/1:13:2,11:2:72:11:396:-15.0019,0,-2.74906	1/1:165:0,164:0:0:164:5877:-275.23,-49.3689,0	0/1:29:17,12:17:605:12:432:-14.2173,0,-44.8617	0/1:29:12,17:12:424:17:593:-19.7002,0,-28.9722	0/1:134:73,61:73:2599:61:2188:-62.4766,0,-186.381	1/1:37:2,35:2:67:35:1252:-52.4326,-4.9032,0	0/1:9:4,5:4:144:5:180:-5.99175,0,-10.3185	1/1:16:0,16:0:0:16:576:-26.9793,-4.81648,0	0/1:97:54,42:54:1908:42:1508:-39.9017,0,-139.322	1/1:67:0,67:0:0:67:2412:-115.132,-20.169,0	0/1:24:15,9:15:534:9:315:-7.64419,0,-40.1185	1/1:172:0,170:0:0:170:6100:-289.376,-51.1751,0	1/1:188:2,185:2:71:185:6639:-308.53,-49.9384,0	0/1:61:33,28:33:1161:28:1004:-29.4815,0,-83.723	0/1:105:56,48:56:1998:48:1724:-51.829,0,-142.699	1/1:174:2,172:2:72:172:6153:-289.949,-45.6893,0	1/1:87:1,86:1:36:86:3065:-140.014,-22.6686,0	1/1:2:0,2:0:0:2:72:-3.5939,-0.60206,0	1/1:60:0,60:0:0:60:2140:-101.381,-18.0618,0	1/1:58:0,57:0:0:57:2036:-101.956,-17.1587,0	0/1:15:7,8:7:247:8:284:-9.80632,0,-17.6214	1/1:124:0,124:0:0:124:4444:-211.063,-37.3277,0	0/1:66:31,35:31:1096:35:1256:-39.3505,0,-77.1089	0/1:116:75,41:75:2658:41:1464:-34.0819,0,-199.02	1/1:131:0,131:0:0:131:4677:-224.875,-39.4349,0	1/1:130:0,129:0:0:129:4632:-222.254,-38.8329,0	1/1:91:0,91:0:0:91:3264:-153.915,-27.3937,0	0/1:19:7,12:7:252:12:424:-14.9642,0,-16.8149	1/1:92:0,91:0:0:91:3256:-155.83,-27.3937,0	1/1:144:0,143:0:0:143:5144:-244.092,-43.0473,0	1/1:196:0,195:0:0:195:6988:-337.482,-58.7009,0	0/1:62:37,25:37:1328:25:892:-25.1759,0,-98.4099	1/1:25:0,24:0:0:24:864:-42.0428,-7.22472,0	0/1:29:13,16:13:466:16:568:-17.1551,0,-32.2014	0/1:66:38,25:38:1360:25:900:-24.1692,0,-100.273	0/1:24:12,12:12:432:12:432:-13.5706,0,-30.8977	1/1:33:0,32:0:0:32:1148:-55.4992,-9.63296,0	1/1:27:0,23:0:0:23:824:-39.89,-6.92369,0	0/1:20:11,9:11:385:9:324:-8.67675,0,-27.9961	0/1:56:31,24:31:1112:24:861:-24.4637,0,-81.5294	0/1:37:21,16:21:745:16:572:-16.2777,0,-54.6731	1/1:92:0,92:0:0:92:3272:-158.174,-27.6948,0	1/1:29:0,29:0:0:29:1036:-49.4774,-8.72987,0
chr06	27983823	.	GAGC	GGGG,GGGC	78686.8	PASS	AB=0.466336,0.521921;ABP=40.73,19.0039;AC=138,49;AF=0.734043,0.260638;AN=188;AO=5972,2019;CIGAR=1M1X1M1X,1M1X2M;DP=8087;DPB=8086.25;DPRA=0,0.907797;EPP=12971,4387.21;EPPR=35.5824;GTI=2;LEN=4,1;MEANALT=2.39362,2.7;MQM=19.1639,42.6736;MQMR=32.2;NS=94;NUMALT=2;ODDS=3.94284;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=204650,70071;QR=494;RO=15;RPL=5972,2019;RPP=12971,4387.21;RPPR=35.5824;RPR=0,0;RUN=1,1;SAF=5972,2019;SAP=12971,4387.21;SAR=0,0;SRF=15;SRP=35.5824;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,14,18:0:0:14,18:476,636:-70.364,-51.0797,-46.8653,-19.5411,0,-14.1226	1/2:156:0,89,66:0:0:89,66:3055,2281:-304.188,-181.428,-154.636,-122.797,0,-102.929	1/2:194:0,91,102:0:0:91,102:3167,3584:-412.504,-285.098,-257.704,-127.557,0,-96.8519	1/1:188:0,185,0:0:0:185,0:6351,0:-314.559,-55.6906,0,-314.559,-55.6906,-314.559	1/1:93:1,92,0:1:35:92,0:3173,0:-155.091,-25.0412,0,-155.392,-27.6948,-157.752	1/1:80:0,78,0:0:0:78,0:2662,0:-131.572,-23.4803,0,-131.572,-23.4803,-131.572	1/1:92:0,91,0:0:0:91,0:3176,0:-154.421,-27.3937,0,-154.421,-27.3937,-154.421	1/2:129:0,61,66:0:0:61,66:2114,2312:-269.621,-183.983,-165.62,-85.6643,0,-65.7963	1/2:68:0,40,28:0:0:40,28:1401,996:-135.26,-79.5692,-67.528,-55.9725,0,-47.5437	1/2:104:0,51,53:0:0:51,53:1757,1853:-218.744,-147.751,-132.399,-71.2568,0,-55.3022	1/2:29:0,11,18:0:0:11,18:357,618:-63.9544,-49.4546,-46.1433,-14.7395,0,-9.32097	1/1:34:0,33,0:0:0:33,0:1092,0:-56.5172,-9.93399,0,-56.5172,-9.93399,-56.5172	1/2:26:0,14,12:0:0:14,12:478,396:-50.8977,-31.4467,-27.2323,-19.7111,0,-16.0987	1/2:21:0,14,7:0:0:14,7:451,248:-40.1744,-20.1034,-15.889,-20.3668,0,-18.2596	1/1:23:0,23,0:0:0:23,0:762,0:-40.6073,-6.92369,0,-40.6073,-6.92369,-40.6073	1/1:21:0,21,0:0:0:21,0:673,0:-34.4984,-6.32163,0,-34.4984,-6.32163,-34.4984	1/2:28:0,9,19:0:0:9,19:307,648:-63.6993,-51.7671,-49.0578,-12.1627,0,-6.4431	1/1:20:0,20,0:0:0:20,0:688,0:-35.1049,-6.0206,0,-35.1049,-6.0206,-35.1049	1/2:21:0,8,13:0:0:8,13:256,432:-44.7207,-34.4616,-32.0533,-10.4924,0,-6.57904	1/2:197:0,83,113:0:0:83,113:2888,3985:-434.939,-316.576,-291.59,-118.262,0,-84.2455	1/2:112:0,59,52:0:0:59,52:2035,1830:-229.279,-145.783,-128.023,-83.5001,0,-67.8465	1/1:170:0,168,0:0:0:168,0:5784,0:-283.248,-50.573,0,-283.248,-50.573,-283.248	1/2:92:0,50,39:0:0:50,39:1731,1362:-177.489,-108.304,-93.2525,-69.261,0,-57.5208	1/1:95:0,88,5:0:0:88,5:3011,171:-148.698,-26.4906,0,-135.099,-12.8192,-133.594	1/2:86:0,35,49:0:0:35,49:1216,1706:-184.447,-135.662,-125.126,-48.7469,0,-33.9964	1/1:302:0,298,0:0:0:298,0:10226,0:-507.641,-89.7069,0,-507.641,-89.7069,-507.641	1/2:206:0,89,116:0:0:89,116:3032,4040:-445.117,-320.775,-293.984,-124.287,0,-89.3677	1/2:18:3,7,8:3:106:7,8:231,271:-23.3052,-14.4956,-19.4763,-2.57453,0,-7.29637	1/2:308:0,130,174:0:0:130,174:4437,6072:-663.916,-482.502,-443.368,-181.389,0,-129.009	1/2:140:0,58,82:0:0:58,82:2015,2876:-308.922,-229.041,-211.582,-80.1319,0,-55.4474	1/2:147:0,51,95:0:0:51,95:1725,3309:-332.117,-262.411,-247.058,-69.6779,0,-41.0801	1/1:27:0,27,0:0:0:27,0:897,0:-45.932,-8.12781,0,-45.932,-8.12781,-45.932	1/1:42:0,42,0:0:0:42,0:1463,0:-70.7251,-12.6433,0,-70.7251,-12.6433,-70.7251	1/1:20:0,20,0:0:0:20,0:690,0:-34.0112,-6.0206,0,-34.0112,-6.0206,-34.0112	1/2:13:0,9,4:0:0:9,4:317,134:-24.1079,-11.0041,-8.29483,-13.3927,0,-12.1886	1/1:29:0,28,0:0:0:28,0:988,0:-47.6894,-8.42884,0,-47.6894,-8.42884,-47.6894	1/2:77:0,30,46:0:0:30,46:1000,1535:-163.5,-121.71,-112.679,-41.8036,0,-27.9562	1/1:226:0,224,0:0:0:224,0:7713,0:-380.865,-67.4307,0,-380.865,-67.4307,-380.865	1/2:34:0,19,15:0:0:19,15:623,502:-66.6876,-40.1601,-34.4405,-26.7945,0,-22.279	1/2:7:0,3,4:0:0:3,4:108,144:-15.921,-11.7863,-10.8832,-4.39319,0,-3.18907	1/2:146:0,62,83:0:0:62,83:2138,2884:-318.013,-229.325,-210.661,-88.6081,0,-63.6226	0/1:30:4,24,2:4:132:24,2:804,42:-33.343,0,-1.9943,-31.9089,-6.61565,-40.4677	1/2:169:0,75,93:0:0:75,93:2548,3246:-365.624,-258.258,-235.681,-107.352,0,-79.3563	1/2:29:0,18,11:0:0:18,11:611,383:-55.7295,-30.828,-25.4095,-25.1846,0,-21.8733	1/1:19:0,19,0:0:0:19,0:615,0:-31.9543,-5.71957,0,-31.9543,-5.71957,-31.9543	1/1:102:0,101,0:0:0:101,0:3518,0:-173.114,-30.404,0,-173.114,-30.404,-173.114	1/2:92:0,44,46:0:0:44,46:1533,1632:-192.894,-129.765,-116.519,-63.1227,0,-49.2753	1/1:185:0,185,0:0:0:185,0:6390,0:-315.412,-55.6906,0,-315.412,-55.6906,-315.412	1/1:132:0,132,0:0:0:132,0:4545,0:-226.051,-39.736,0,-226.051,-39.736,-226.051	1/2:157:1,89,67:1:30:89,67:3076,2343:-310.396,-183.62,-159.068,-124.832,0,-106.904	1/1:197:0,195,1:0:0:195,1:6662,36:-333.091,-58.7009,0,-330.222,-55.7599,-329.921	1/2:13:0,11,2:0:0:11,2:368,62:-20.2991,-5.21705,-1.90572,-15.3699,0,-14.7679	1/1:168:0,166,0:0:0:166,0:5722,0:-280.579,-49.971,0,-280.579,-49.971,-280.579	1/2:28:1,11,16:1:36:11,16:366,559:-58.0041,-41.8992,-41.0964,-13.8409,0,-11.544	1/2:26:0,16,9:0:0:16,9:534,312:-47.4785,-25.0466,-20.2301,-22.5867,0,-19.8774	1/2:127:0,62,64:0:0:62,64:2157,2217:-261.109,-175.811,-157.147,-85.2247,0,-65.9587	1/1:39:0,36,2:0:0:36,2:1180,72:-60.0221,-10.8371,0,-54.2777,-4.93984,-53.6756	1/2:9:0,5,4:0:0:5,4:159,144:-18.606,-11.8236,-10.3185,-7.06078,0,-5.85666	1/1:16:0,16,0:0:0:16,0:564,0:-26.9541,-4.81648,0,-26.9541,-4.81648,-26.9541	1/2:89:0,40,47:0:0:40,47:1396,1630:-184.265,-129.535,-117.494,-54.8776,0,-40.7292	1/1:69:0,68,1:0:0:68,1:2270,21:-114.734,-20.47,0,-113.415,-18.9704,-113.114	1/2:24:0,8,15:0:0:8,15:267,503:-50.5081,-40.0309,-37.6226,-10.5156,0,-6.00013	1/1:173:0,172,0:0:0:172,0:5977,0:-293.888,-51.7772,0,-293.888,-51.7772,-293.888	1/1:188:0,185,2:0:0:185,2:6365,72:-315.434,-55.6906,0,-309.696,-49.7996,-309.094	1/2:62:0,30,32:0:0:30,32:1018,1120:-130.77,-89.263,-80.2321,-41.769,0,-32.136	1/2:98:0,48,50:0:0:48,50:1615,1775:-208.914,-141.605,-127.156,-67.5756,0,-52.5241	1/1:176:0,171,2:0:0:171,2:5832,72:-293.057,-51.4761,0,-287.32,-45.687,-286.718	1/1:87:0,85,1:0:0:85,1:2935,36:-141.934,-25.5876,0,-139.065,-22.6081,-138.764	1/1:2:0,2,0:0:0:2,0:70,0:-3.58926,-0.60206,0,-3.58926,-0.60206,-3.58926	1/1:58:0,57,0:0:0:57,0:1970,0:-96.9158,-17.1587,0,-96.9158,-17.1587,-96.9158	1/1:57:3,49,3:3:95:49,3:1611,66:-79.3694,-9.15666,0,-76.0447,-10.5318,-80.7174	1/2:14:0,8,6:0:0:8,6:285,212:-28.8499,-17.2347,-14.8265,-11.897,0,-10.0908	1/1:124:0,122,0:0:0:122,0:4192,0:-208.307,-36.7257,0,-208.307,-36.7257,-208.307	1/2:62:0,34,28:0:0:34,28:1167,977:-124.762,-78.1648,-67.9298,-46.8688,0,-38.44	1/2:112:1,42,68:1:33:42,68:1433,2371:-242.593,-185.888,-175.912,-54.2881,0,-36.4896	1/1:131:0,130,0:0:0:130,0:4507,0:-221.824,-39.1339,0,-221.824,-39.1339,-221.824	1/1:131:0,129,0:0:0:129,0:4437,0:-221.67,-38.8329,0,-221.67,-38.8329,-221.67	1/1:92:0,92,0:0:0:92,0:3171,0:-154.887,-27.6948,0,-154.887,-27.6948,-154.887	1/2:19:0,12,7:0:0:12,7:401,237:-35.8126,-19.1256,-15.5132,-16.9661,0,-14.8589	1/1:95:0,92,1:0:0:92,1:3081,21:-155.827,-27.6948,0,-154.508,-26.3787,-154.207	1/1:144:0,142,1:0:0:142,1:4954,20:-244.922,-42.7463,0,-243.692,-41.4861,-243.391	1/1:198:0,194,0:0:0:194,0:6665,0:-332.729,-58.3998,0,-332.729,-58.3998,-332.729	1/2:59:1,24,34:1:27:24,34:788,1133:-120.79,-87.8403,-82.6553,-31.1944,0,-23.0038	1/1:25:0,25,0:0:0:25,0:831,0:-43.5067,-7.52575,0,-43.5067,-7.52575,-43.5067	1/2:29:0,13,12:0:0:13,12:399,386:-48.5124,-30.6477,-26.7343,-17.9305,0,-14.3181	1/2:63:0,26,37:0:0:26,37:876,1266:-138.128,-100.581,-92.7539,-37.7994,0,-26.6613	1/2:24:0,13,10:0:0:13,10:428,339:-44.7886,-26.7527,-22.8393,-17.9588,0,-14.9485	1/1:33:0,33,0:0:0:33,0:1113,0:-57.2466,-9.93399,0,-57.2466,-9.93399,-57.2466	1/1:28:0,27,0:0:0:27,0:922,0:-47.2623,-8.12781,0,-47.2623,-8.12781,-47.2623	1/2:18:0,8,10:0:0:8,10:278,329:-36.6352,-26.3009,-23.8926,-10.5763,0,-7.56602	1/2:56:0,23,32:0:0:23,32:760,1069:-117.461,-84.77,-77.8463,-32.8314,0,-23.1985	1/2:32:0,16,16:0:0:16,16:505,543:-65.9733,-43.4726,-38.6561,-22.7623,0,-17.9459	1/1:92:0,91,0:0:0:91,0:3070,0:-155.318,-27.3937,0,-155.318,-27.3937,-155.318	1/1:32:0,31,0:0:0:31,0:1045,0:-52.1481,-9.33193,0,-52.1481,-9.33193,-52.1481
chr06	28100916	.	TTC	CTG,TTG	123067	PASS	AB=0.553222,0.44393;ABP=72.1209,79.7153;AC=134,48;AF=0.736264,0.263736;AN=182;AO=4614,1256;CIGAR=1X1M1X,2M1X;DP=5889;DPB=5895.67;DPRA=32.7056,0.884336;EPP=10022.2,2730.38;EPPR=0;GTI=2;LEN=3,1;MEANALT=1.75556,2.17647;MQM=59.9432,59.9809;MQMR=0;NS=91;NUMALT=2;ODDS=0.632837;PAIRED=0,0;PAIREDR=0;PAO=11,4.5;PQA=392,0;PQR=0;PRO=4.5;QA=161183,44705;QR=0;RO=0;RPL=1,0;RPP=10013.5,2730.38;RPPR=0;RPR=4613,1256;RUN=1,1;SAF=1,0;SAP=10013.5,2730.38;SAR=4613,1256;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,19,13:0:0:19,13:654,464:-91.2943,-38.1841,-32.4645,-53.4618,0,-49.5484	1/2:53:0,18,35:0:0:18,35:586,1256:-150.101,-102.809,-97.3907,-47.6281,0,-37.092	1/2:96:0,46,50:0:0:46,50:1585,1778:-273.988,-145.25,-131.403,-129.088,0,-114.037	1/1:163:0,162,0:0:0:162,0:5643,0:-507.75,-48.7669,0,-507.75,-48.7669,-507.75	1/1:28:0,28,0:0:0:28,0:998,0:-89.776,-8.42884,0,-89.776,-8.42884,-89.776	1/1:25:0,25,0:0:0:25,0:878,0:-78.9775,-7.52575,0,-78.9775,-7.52575,-78.9775	1/1:128:0,128,0:0:0:128,0:4477,0:-403.107,-38.5318,0,-403.107,-38.5318,-403.107	1/2:69:0,49,20:0:0:49,20:1716,716:-198.357,-58.7471,-43.9966,-139.966,0,-133.945	1/2:53:0,36,17:0:0:36,17:1265,593:-151.542,-48.5772,-37.7401,-103.314,0,-98.1966	1/2:54:0,34,20:0:0:34,20:1202,720:-157,-59.1082,-48.8732,-98.2493,0,-92.2287	1/2:23:0,12,11:0:0:12,11:427,387:-66.6571,-31.8546,-28.2422,-35.156,0,-31.8447	1/1:82:0,80,0:0:0:80,0:2819,0:-253.698,-24.0824,0,-253.698,-24.0824,-253.698	1/2:62:0,37,25:0:0:37,25:1307,896:-179.872,-73.4346,-62.2965,-106.793,0,-99.2674	1/2:51:0,30,21:0:0:30,21:1020,747:-143.956,-61.2327,-52.2018,-83.0725,0,-76.7509	1/1:40:0,40,0:0:0:40,0:1428,0:-128.818,-12.0412,0,-128.818,-12.0412,-128.818	1/1:35:0,35,0:0:0:35,0:1231,0:-111.094,-10.5361,0,-111.094,-10.5361,-111.094	1/2:24:0,9,15:0:0:9,15:318,526:-69.0541,-43.1548,-40.4455,-26.2515,0,-21.736	1/1:16:0,16,0:0:0:16,0:567,0:-51.3612,-4.81648,0,-51.3612,-4.81648,-51.3612	1/2:12:0,6,6:0:0:6,6:205,212:-34.2492,-17.6186,-15.8124,-16.978,0,-15.1718	1/2:100:0,56,44:0:0:56,44:1995,1549:-288.728,-126.114,-109.256,-162.627,0,-149.382	1/2:107:0,58,48:0:0:58,48:2002,1695:-300.415,-138.045,-120.585,-162.379,0,-147.929	1/1:62:0,62,0:0:0:62,0:2141,0:-192.594,-18.6639,0,-192.594,-18.6639,-192.594	1/2:88:0,49,39:0:0:49,39:1726,1369:-252.284,-111.767,-97.016,-140.869,0,-129.129	1/1:59:0,59,0:0:0:59,0:2026,0:-182.604,-17.7608,0,-182.604,-17.7608,-182.604	1/2:48:0,36,11:0:0:36,11:1266,388:-134.639,-31.5873,-20.7502,-103.045,0,-99.7336	1/1:199:0,199,0:0:0:199,0:6918,0:-622.701,-59.905,0,-622.701,-59.905,-622.701	1/2:152:0,81,71:0:0:81,71:2840,2556:-440.017,-208.916,-184.533,-231.456,0,-210.083	1/2:17:0,7,10:0:0:7,10:250,356:-49.7539,-29.3709,-27.2637,-20.7395,0,-17.7292	1/2:129:0,72,57:0:0:72,57:2503,2048:-370.922,-167.433,-145.759,-203.843,0,-186.684	1/2:79:0,63,15:0:0:63,15:2152,522:-217.203,-42.5732,-23.6083,-174.757,0,-170.242	1/2:98:0,51,47:0:0:51,47:1798,1671:-282.923,-136.528,-121.176,-146.749,0,-132.6	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/1:9:0,9,0:0:0:9,0:305,0:-27.7782,-2.70927,0,-27.7782,-2.70927,-27.7782	.:.:.:.:.:.:.:.	1/2:8:0,3,5:0:0:3,5:106,180:-23.6772,-15.0469,-14.1438,-8.98601,0,-7.48086	1/1:8:0,8,0:0:0:8,0:277,0:-25.2651,-2.40824,0,-25.2651,-2.40824,-25.2651	1/2:133:0,61,72:0:0:61,72:2151,2579:-385.824,-210.684,-192.322,-175.495,0,-153.821	1/1:81:0,81,0:0:0:81,0:2830,0:-254.579,-24.3834,0,-254.579,-24.3834,-254.579	1/2:26:0,12,14:0:0:12,14:414,500:-74.7473,-41.1218,-37.5094,-33.9759,0,-29.7615	.:.:.:.:.:.:.:.	1/2:96:0,57,39:0:0:57,39:1987,1392:-275.427,-113.837,-96.6786,-161.943,0,-150.203	1/1:13:0,13,0:0:0:13,0:464,0:-42.0977,-3.91339,0,-42.0977,-3.91339,-42.0977	1/2:69:0,39,30:0:0:39,30:1358,1064:-197.105,-86.6811,-74.9409,-110.416,0,-101.385	1/2:31:0,13,17:0:0:13,17:457,607:-86.8269,-49.627,-45.7136,-37.3312,0,-32.2137	1/1:48:0,48,0:0:0:48,0:1656,0:-149.323,-14.4494,0,-149.323,-14.4494,-149.323	1/1:118:0,117,0:0:0:117,0:4108,0:-369.536,-35.2205,0,-369.536,-35.2205,-369.536	1/2:54:0,36,18:0:0:36,18:1251,648:-154.931,-53.2333,-42.3963,-102.053,0,-96.6346	1/1:135:0,135,0:0:0:135,0:4666,0:-420.109,-40.6391,0,-420.109,-40.6391,-420.109	1/1:49:0,49,0:0:0:49,0:1732,0:-156.164,-14.7505,0,-156.164,-14.7505,-156.164	1/2:93:0,54,38:0:0:54,38:1900,1364:-265.927,-111.262,-95.0062,-154.661,0,-143.222	1/1:191:0,191,0:0:0:191,0:6675,0:-600.774,-57.4967,0,-600.774,-57.4967,-600.774	1/2:4:0,2,2:0:0:2,2:70,72:-11.9251,-6.23466,-5.6326,-6.04527,0,-5.44321	1/1:42:0,42,0:0:0:42,0:1484,0:-133.854,-12.6433,0,-133.854,-12.6433,-133.854	1/2:59:0,36,23:0:0:36,23:1280,805:-170.158,-65.8438,-55.0067,-104.666,0,-97.7425	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:115:0,65,49:0:0:65,49:2271,1732:-325.78,-141.048,-121.481,-184.724,0,-169.973	1/1:27:0,27,0:0:0:27,0:929,0:-83.9189,-8.12781,0,-83.9189,-8.12781,-83.9189	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/1:16:0,16,0:0:0:16,0:566,0:-51.2712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chr06	28263021	.	T	C	161633	PASS	AB=0.524258;ABP=28.5055;AC=139;AF=0.739362;AN=188;AO=7746;CIGAR=1X;DP=10156;DPB=10156;DPRA=0;EPP=16823.2;EPPR=5212.39;GTI=1;LEN=1;MEANALT=1.03191;MQM=48.598;MQMR=59.6103;NS=94;NUMALT=1;ODDS=3.43369;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277618;QR=86118;RO=2407;RPL=0;RPP=16823.2;RPPR=5212.39;RPR=7746;RUN=1;SAF=7746;SAP=16823.2;SAR=0;SRF=2407;SRP=5229.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:12,27:12:432:27:972:-74.3039,0,-27.4806	0/1:121:54,67:54:1936:67:2400:-177.5,0,-138.088	0/1:120:62,58:62:2224:58:2042:-143.898,0,-164.3	1/1:247:1,246:1:36:246:8820:-784.911,-70.7561,0	1/1:69:1,68:1:36:68:2444:-214.495,-17.1728,0	1/1:67:0,67:0:0:67:2404:-213.216,-20.169,0	1/1:177:0,177:0:0:177:6324:-565.63,-53.2823,0	0/1:145:65,80:65:2336:80:2868:-211.507,0,-166.849	0/1:97:42,55:42:1512:55:1972:-146.207,0,-107.064	0/1:60:24,36:24:856:36:1296:-97.7587,0,-59.2947	0/1:80:44,36:44:1576:36:1295:-91.7326,0,-118.022	1/1:85:0,85:0:0:85:3056:-271.071,-25.5876,0	0/1:109:53,56:53:1900:56:2016:-146.506,0,-138.43	0/1:96:56,40:56:2004:40:1440:-99.6016,0,-151.711	1/1:83:0,83:0:0:83:2984:-266.258,-24.9855,0	1/1:55:0,55:0:0:55:1967:-175.502,-16.5567,0	0/1:84:36,48:36:1296:48:1724:-128.466,0,-91.5858	1/1:58:0,58:0:0:58:2064:-183.543,-17.4597,0	0/1:78:28,50:28:1008:50:1800:-136.58,0,-67.4399	0/1:252:113,139:113:4019:139:4950:-367.096,0,-286.021	0/1:139:62,77:62:2224:77:2768:-204.936,0,-158.559	1/1:111:0,111:0:0:111:3969:-356.195,-33.4143,0	0/1:64:26,38:26:932:38:1349:-101.483,0,-64.9008	1/1:92:0,92:0:0:92:3308:-294.621,-27.6948,0	0/1:87:47,40:47:1680:40:1428:-99.408,0,-125.005	1/1:435:0,434:0:0:434:15549:-1392.17,-130.647,0	0/1:297:136,161:136:4854:161:5754:-424.481,0,-347.561	0/1:46:18,28:18:648:28:1008:-76.5605,0,-44.8045	0/1:335:152,183:152:5445:183:6572:-487.084,0,-389.331	0/1:134:60,74:60:2140:74:2656:-197.193,0,-152.476	0/1:121:47,74:47:1669:74:2660:-201.14,0,-113.998	1/1:1:0,1:0:0:1:36:-3.57343,-0.30103,0	1/1:14:0,14:0:0:14:504:-45.3692,-4.21442,0	1/1:4:0,4:0:0:4:144:-13.1669,-1.20412,0	0/0:15:14,1:14:495:1:36:0,-0.956833,-41.3244	1/1:9:0,9:0:0:9:316:-28.4963,-2.70927,0	0/1:226:110,116:110:3960:116:4168:-305.377,0,-288.548	1/1:204:0,204:0:0:204:7308:-651.511,-61.4101,0	0/1:94:45,49:45:1616:49:1756:-128.317,0,-117.397	0/1:4:3,1:3:108:1:36:-2.36931,0,-8.87105	0/1:192:94,98:94:3357:98:3516:-255.637,0,-244.429	1/1:56:0,56:0:0:56:2012:-179.364,-16.8577,0	0/1:98:44,54:44:1546:54:1940:-142.703,0,-109.902	0/1:101:43,58:43:1544:58:2079:-155.747,0,-108.835	1/1:79:0,79:0:0:79:2840:-253.926,-23.7814,0	1/1:61:0,61:0:0:61:2184:-196.089,-18.3628,0	0/1:96:48,48:48:1712:48:1724:-123.896,0,-125.359	1/1:153:0,153:0:0:153:5480:-491.09,-46.0576,0	1/1:146:0,146:0:0:146:5240:-468.564,-43.9504,0	0/1:171:94,77:94:3376:77:2764:-194.913,0,-252.579	1/1:116:0,116:0:0:116:4164:-373.318,-34.9195,0	0/1:5:3,2:3:108:2:72:-5.30264,0,-8.57002	1/1:188:4,183:4:144:183:6556:-570.03,-43.3356,0	0/1:34:18,16:18:644:16:576:-41.8032,0,-48.0474	0/1:9:3,6:3:108:6:216:-16.8631,0,-7.3659	0/1:135:73,62:73:2612:62:2224:-158.247,0,-194.689	1/1:40:1,38:1:36:38:1368:-118.471,-8.50096,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	1/1:22:0,22:0:0:22:792:-71.4201,-6.62266,0	0/1:68:37,31:37:1305:31:1104:-77.8569,0,-97.2794	1/1:128:0,128:0:0:128:4604:-412.064,-38.5318,0	0/1:11:6,5:6:216:5:180:-13.1707,0,-16.4792	1/1:243:2,241:2:72:241:8641:-767.712,-66.3136,0	1/1:215:3,212:3:108:212:7595:-669.195,-54.6605,0	0/1:115:60,55:60:2140:55:1972:-141.569,0,-158.25	0/1:87:36,51:36:1292:51:1836:-138.408,0,-90.3525	1/1:198:2,196:2:72:196:6996:-618.222,-52.7672,0	1/1:97:3,94:3:108:94:3372:-290.515,-19.1247,0	1/1:76:2,74:2:72:74:2660:-230.035,-16.0416,0	1/1:73:0,73:0:0:73:2620:-233.452,-21.9752,0	1/1:69:0,69:0:0:69:2480:-222.587,-20.7711,0	0/1:38:19,19:19:684:19:680:-49.8395,0,-50.4236	1/1:88:0,88:0:0:88:3164:-280.41,-26.4906,0	0/1:57:23,34:23:828:34:1212:-89.6868,0,-57.6846	0/1:231:110,121:110:3913:121:4348:-318.383,0,-282.764	1/1:189:1,188:1:36:188:6726:-598.848,-53.2964,0	1/1:100:0,100:0:0:100:3588:-319.631,-30.103,0	1/1:128:0,128:0:0:128:4596:-407.98,-38.5318,0	0/1:8:6,2:6:201:2:72:-4.35313,0,-16.0088	1/1:110:0,110:0:0:110:3940:-350.84,-33.1133,0	1/1:108:0,108:0:0:108:3857:-342.219,-32.5112,0	1/1:239:0,239:0:0:239:8576:-767.344,-71.9462,0	0/1:99:45,54:45:1620:54:1936:-142.418,0,-116.261	1/1:77:0,77:0:0:77:2763:-247.442,-23.1793,0	0/1:84:49,35:49:1760:35:1256:-87.5772,0,-133.176	0/1:168:85,83:85:3052:83:2980:-216.061,0,-224.274	0/1:58:37,21:37:1328:21:756:-49.7401,0,-102.112	1/1:89:0,89:0:0:89:3178:-281.155,-26.7917,0	1/1:76:0,76:0:0:76:2732:-242.659,-22.8783,0	0/1:52:26,26:26:936:26:936:-68.3136,0,-68.9013	0/1:123:50,73:50:1785:73:2615:-196.785,0,-123.869	0/1:120:69,51:69:2461:51:1817:-126.552,0,-185.56	1/1:154:0,154:0:0:154:5501:-492.369,-46.3586,0	1/1:122:0,122:0:0:122:4347:-389.396,-36.7257,0
chr06	28505256	.	G	A	27420.1	PASS	AB=0.502;ABP=3.19274;AC=49;AF=0.260638;AN=188;AO=2671;CIGAR=1X;DP=11288;DPB=11288;DPRA=1.14236;EPP=5794.33;EPPR=18701.6;GTI=2;LEN=1;MEANALT=1.05172;MQM=29.4111;MQMR=59.9421;NS=94;NUMALT=1;ODDS=1.02515;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95697;QR=307206;RO=8611;RPL=2665;RPP=5751.01;RPPR=18632.1;RPR=6;RUN=1;SAF=2666;SAP=5759.66;SAR=5;SRF=8603;SRP=18632.1;SRR=8;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:25,25:25:871:25:896:-43.2444,0,-63.654	0/1:231:105,126:105:3772:126:4524:-229.1,0,-270.095	0/1:126:69,57:69:2435:57:2048:-98.3884,0,-181.466	0/0:172:171,1:171:6092:1:36:0,-48.7964,-545.402	0/0:82:81,1:81:2895:1:36:0,-21.8634,-257.965	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.654	0/0:146:146,0:146:5213:0:0:0,-43.9504,-469.308	0/1:187:87,100:87:3124:100:3596:-182.343,0,-225.091	0/1:109:40,69:40:1432:69:2465:-130.72,0,-96.3638	0/1:165:86,77:86:3049:77:2772:-155.862,0,-225.278	0/1:46:21,25:21:756:25:885:-50.7859,0,-54.5198	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/1:88:35,53:35:1260:53:1900:-99.1709,0,-87.2148	0/1:68:36,32:36:1288:32:1152:-61.0592,0,-95.7535	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.853	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.012	0/1:60:26,34:26:923:34:1212:-62.4824,0,-65.325	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:31:9,22:9:324:22:788:-43.314,0,-20.1739	0/1:325:215,110:215:7693:110:3960:-194.838,0,-594.551	0/1:178:87,91:87:3071:91:3261:-176.629,0,-223.033	0/0:197:197,0:197:7026:0:0:0,-59.3029,-632.392	0/1:116:57,59:57:2033:59:2115:-123.825,0,-148.321	0/0:168:158,10:158:5630:10:360:0,-24.9012,-481.104	0/1:116:59,57:59:2116:57:2048:-109.841,0,-155.789	0/0:374:370,3:370:13173:3:108:0,-103.774,-1176.66	0/1:216:113,103:113:4001:103:3666:-194.574,0,-295.257	0/1:45:22,23:22:792:23:824:-44.7238,0,-58.0593	0/1:251:130,121:130:4626:121:4352:-264.173,0,-340.944	0/1:210:99,111:99:3539:111:3984:-218.213,0,-255.5	0/1:131:57,74:57:2044:74:2637:-156.281,0,-144.797	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6084	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:11:4,7:4:140:7:218:-12.3541,0,-9.63325	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:279:135,144:135:4812:144:5180:-316.936,0,-349.248	0/0:385:384,0:384:13714:0:0:0,-115.596,-1233.68	0/1:60:21,39:21:752:39:1400:-74.7798,0,-49.9445	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:107:40,67:40:1432:67:2412:-136.017,0,-96.964	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:188:90,98:90:3223:98:3512:-191.132,0,-233.698	0/1:114:47,67:47:1688:67:2392:-141.089,0,-117.886	0/0:96:96,0:96:3413:0:0:0,-28.8989,-307.384	0/0:76:76,0:76:2687:0:0:0,-22.8783,-242.073	0/1:181:89,92:89:3188:92:3277:-163.294,0,-232.653	0/0:238:238,0:238:8493:0:0:0,-71.6451,-764.323	0/0:178:178,0:178:6328:0:0:0,-53.5833,-569.615	0/1:191:128,63:128:4575:63:2252:-111.668,0,-354.415	0/0:213:212,0:212:7538:0:0:0,-63.8184,-678.084	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:172:172,0:172:6165:0:0:0,-51.7772,-554.943	0/1:25:11,14:11:396:14:491:-31.3815,0,-28.457	1/1:2:0,2:0:0:2:72:-5.03234,-0.60206,0	0/1:159:90,69:90:3203:69:2472:-127.06,0,-240.618	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	1/1:1:0,1:0:0:1:36:-2.98075,-0.30103,0	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.1138	0/1:83:42,41:42:1500:41:1461:-78.097,0,-110.309	0/0:139:139,0:139:4963:0:0:0,-41.8432,-446.799	0/1:8:3,5:3:108:5:180:-10.2442,0,-7.66693	0/0:339:339,0:339:12074:0:0:0,-102.049,-1086.5	0/0:348:344,4:344:12264:4:144:0,-93.2486,-1092.07	0/1:68:36,32:36:1296:32:1148:-60.5307,0,-96.4739	0/1:91:62,29:62:2151:29:1036:-50.3147,0,-165.811	0/0:342:338,4:338:12042:4:144:0,-91.9235,-1072.54	0/0:67:61,6:61:2184:6:216:0,-3.77487,-180.432	0/0:17:16,1:16:567:1:36:0,-2.29643,-48.5396	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.688	0/0:126:126,0:126:4494:0:0:0,-37.9298,-404.621	0/1:23:9,14:9:324:14:504:-31.3472,0,-22.5822	0/0:28:28,0:28:975:0:0:0,-8.42884,-88.0588	0/1:69:28,41:28:999:41:1472:-77.002,0,-69.4534	0/1:139:69,70:69:2468:70:2516:-135.96,0,-180.531	0/0:235:234,1:234:8371:1:36:0,-67.7613,-750.413	0/0:172:172,0:172:6152:0:0:0,-51.7772,-553.777	0/0:107:106,1:106:3785:1:36:0,-29.5616,-338.199	0/1:7:3,4:3:99:4:144:-7.69261,0,-7.12937	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.451	0/0:150:148,1:148:5279:1:36:0,-41.6149,-471.649	0/0:248:248,0:248:8856:0:0:0,-74.6554,-797.006	0/1:142:73,69:73:2620:69:2480:-142.808,0,-193.299	0/0:58:58,0:58:2062:0:0:0,-17.4597,-185.85	0/1:110:47,63:47:1634:63:2264:-133.599,0,-114.158	0/1:215:116,99:116:4137:99:3552:-195.14,0,-307.774	0/1:55:28,27:28:1008:27:945:-47.1383,0,-74.4797	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.484	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/1:31:21,10:21:752:10:356:-16.2513,0,-58.6743	0/1:56:17,39:17:608:39:1396:-82.1597,0,-38.1805	0/1:88:25,63:25:881:63:2256:-140.408,0,-53.1152	0/0:160:160,0:160:5670:0:0:0,-48.1648,-510.419	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.928
chr06	28557813	.	G	C	101330	PASS	AB=0.489274;ABP=12.2335;AC=49;AF=0.260638;AN=188;AO=4553;CIGAR=1X;DP=18526;DPB=18526;DPRA=1.1663;EPP=9881.04;EPPR=30271.2;GTI=0;LEN=1;MEANALT=1.23077;MQM=59.6787;MQMR=59.981;NS=94;NUMALT=1;ODDS=1.56771;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160939;QR=491293;RO=13951;RPL=2528;RPP=123.678;RPPR=569.055;RPR=2025;RUN=1;SAF=2529;SAP=124.64;SAR=2024;SRF=7932;SRP=572.622;SRR=6019;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:8,10:8:279:10:360:-27.3258,0,-20.029	0/1:162:101,61:101:3619:61:2175:-147.241,0,-277.147	0/1:111:43,68:43:1532:68:2422:-184.815,0,-104.752	0/0:540:537,3:537:18988:3:108:0,-152.481,-1698.43	0/0:162:161,1:161:5736:1:36:0,-45.1686,-512.762	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:360:359,1:359:12506:1:36:0,-104.773,-1121.8	0/1:163:81,82:81:2872:82:2922:-214.144,0,-209.648	0/1:137:71,66:71:2531:66:2344:-169.975,0,-186.8	0/1:235:135,100:135:4696:100:3501:-244.501,0,-352.066	0/1:162:69,93:69:2410:93:3297:-247.126,0,-168.388	0/0:90:90,0:90:3165:0:0:0,-27.0927,-285.074	0/1:95:46,49:46:1582:49:1739:-128.195,0,-114.065	0/1:163:78,84:78:2787:84:2957:-217.214,0,-201.944	0/0:142:142,0:142:4929:0:0:0,-42.7463,-443.771	0/0:133:133,0:133:4680:0:0:0,-40.037,-421.368	0/1:90:35,55:35:1210:55:1939:-147.69,0,-82.106	0/0:75:75,0:75:2601:0:0:0,-22.5772,-234.336	0/1:67:37,30:37:1307:30:1057:-75.269,0,-97.7617	0/1:581:297,284:297:10460:284:10014:-726.26,0,-766.432	0/1:403:220,183:220:7855:183:6489:-462.656,0,-585.665	0/0:229:229,0:229:8078:0:0:0,-68.9359,-727.046	0/1:145:69,76:69:2436:76:2690:-198.668,0,-175.845	0/0:208:195,12:195:6903:12:416:0,-24.9111,-583.586	0/1:179:98,81:98:3441:81:2850:-202.834,0,-256.023	0/0:634:633,0:633:22217:0:0:0,-190.552,-1998.64	0/1:511:262,249:262:9306:249:8860:-643.508,0,-683.2	0/1:92:51,41:51:1796:41:1434:-101.659,0,-134.227	0/1:696:377,318:377:13227:318:11191:-797.465,0,-980.669	0/1:247:140,107:140:4972:107:3793:-267.208,0,-373.276	0/1:240:108,132:108:3816:132:4685:-349.494,0,-271.392	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:52:52,0:52:1843:0:0:0,-15.6536,-166.15	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:5,4:5:176:4:140:-10.2344,0,-13.4757	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:497:220,277:220:7714:277:9796:-730.479,0,-544.695	0/0:302:301,1:301:10680:1:36:0,-87.3128,-957.498	0/1:101:47,54:47:1620:54:1863:-137.528,0,-115.679	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/1:364:199,165:199:7046:165:5845:-416.562,0,-524.636	0/0:97:97,0:97:3448:0:0:0,-29.1999,-310.535	0/1:245:105,139:105:3723:139:4920:-369.101,0,-261.463	0/1:197:104,93:104:3653:93:3319:-239.623,0,-269.543	0/0:152:152,0:152:5355:0:0:0,-45.7566,-482.09	0/0:261:259,1:259:9056:1:36:0,-75.0293,-811.432	0/1:132:73,58:73:2590:58:2069:-146.68,0,-193.554	0/0:304:303,0:303:10683:0:0:0,-91.2121,-960.585	0/0:280:279,1:279:9769:1:36:0,-80.6901,-875.579	0/1:291:140,151:140:4933:151:5325:-391.725,0,-356.522	0/0:391:391,0:391:13778:0:0:0,-117.703,-1239.82	0/1:19:9,10:9:324:10:352:-26.2986,0,-23.7863	0/0:119:117,2:117:4150:2:72:0,-28.9858,-366.846	0/1:160:73,87:73:2580:87:3039:-225.558,0,-184.284	0/1:10:4,6:4:144:6:216:-16.773,0,-10.3033	0/1:279:170,108:170:6019:108:3860:-263.449,0,-457.777	0/0:86:86,0:86:2990:0:0:0,-25.8886,-269.334	0/1:22:14,8:14:491:8:279:-18.8249,0,-37.8985	0/0:47:47,0:47:1658:0:0:0,-14.1484,-149.506	0/1:142:68,74:68:2411:74:2632:-194.365,0,-174.5	0/0:235:233,2:233:8187:2:72:0,-63.9053,-730.02	0/1:19:10,9:10:339:9:320:-23.4228,0,-25.1179	0/0:305:305,0:305:10716:0:0:0,-91.8141,-964.334	0/0:417:413,3:413:14554:3:108:0,-115.513,-1299.53	0/1:164:82,82:82:2900:82:2910:-212.749,0,-211.869	0/1:200:107,92:107:3756:92:3295:-235.876,0,-277.979	0/0:351:344,4:344:12008:4:129:0,-93.1745,-1068.63	0/0:289:287,2:287:10158:2:63:0,-81.0145,-908.175	0/0:103:102,1:102:3592:1:36:0,-27.4078,-319.891	0/0:93:93,0:93:3283:0:0:0,-27.9958,-295.687	0/0:198:198,0:198:6885:0:0:0,-59.6039,-619.731	0/1:39:28,11:28:1000:11:384:-23.1545,0,-78.5752	0/0:121:120,0:120:4278:0:0:0,-36.1236,-384.839	0/1:71:44,27:44:1571:27:972:-66.4248,0,-120.308	0/1:420:189,231:189:6656:231:8144:-606.504,0,-472.695	0/0:276:275,0:275:9578:0:0:0,-82.7832,-861.638	0/0:144:143,0:143:5063:0:0:0,-43.0473,-455.456	0/0:127:126,1:126:4463:1:32:0,-35.0315,-398.642	0/1:11:8,3:8:288:3:99:-5.92525,0,-22.9561	0/0:255:255,0:255:9035:0:0:0,-76.7626,-813.139	0/0:151:150,1:150:5336:1:36:0,-41.8573,-476.776	0/0:640:640,0:640:22448:0:0:0,-192.659,-2019.75	0/1:255:126,128:126:4460:128:4462:-324.887,0,-324.749	0/0:151:151,0:151:5257:0:0:0,-45.4555,-473.272	0/1:183:98,85:98:3420:85:3013:-216.238,0,-252.928	0/1:344:181,161:181:6360:161:5682:-408.156,0,-469.189	0/1:65:29,36:29:1019:36:1256:-93.7698,0,-72.4543	0/0:109:109,0:109:3830:0:0:0,-32.8123,-344.887	0/0:73:73,0:73:2562:0:0:0,-21.9752,-230.829	0/1:125:83,41:83:2939:41:1436:-91.8327,0,-227.056	0/1:196:104,92:104:3687:92:3263:-234.851,0,-273.031	0/1:163:52,111:52:1835:111:3901:-302.131,0,-116.362	0/0:217:217,0:217:7588:0:0:0,-65.3235,-682.837	0/0:265:263,1:263:9243:1:36:0,-76.2335,-828.255
chr06	28557836	.	GTAAGCTC	GTAAACTC,CTAAACTT	234996	PASS	AB=0.483691,0.50846;ABP=16.2554,6.57412;AC=138,50;AF=0.734043,0.265957;AN=188;AO=8087,2938;CIGAR=4M1X3M,1X3M1X2M1X;DP=11105;DPB=11345.8;DPRA=119.398,1.06284;EPP=17529,6382.8;EPPR=13.8677;GTI=1;LEN=1,8;MEANALT=2.33333,2.8;MQM=59.9963,59.3618;MQMR=60;NS=94;NUMALT=2;ODDS=2.03157;PAIRED=0,0;PAIREDR=0;PAO=4,1910;PQA=144,67712;PQR=144;PRO=4;QA=288986,103056;QR=176;RO=5;RPL=4,0;RPP=17529,6382.8;RPPR=13.8677;RPR=8083,2938;RUN=1,1;SAF=0,0;SAP=17563.7,6382.8;SAR=8087,2938;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:51:0,16,35:0:0:16,35:559,1228:-145.631,-100.159,-95.3427,-45.8211,0,-35.2851	1/2:143:0,63,77:0:0:63,77:2245,2717:-404.263,-221.27,-202.305,-183.043,0,-159.863	1/2:277:0,144,132:0:0:144,132:5143,4625:-795.668,-376.357,-333.008,-419.438,0,-379.702	1/1:253:0,249,0:0:0:249,0:8900,0:-800.673,-74.9565,0,-800.673,-74.9565,-800.673	1/1:92:0,90,0:0:0:90,0:3217,0:-289.404,-27.0927,0,-289.404,-27.0927,-289.404	1/1:56:0,56,0:0:0:56,0:1997,0:-180.002,-16.8577,0,-180.002,-16.8577,-180.002	1/1:262:0,260,1:0:0:260,1:9268,36:-833.783,-78.2678,0,-830.846,-75.2755,-830.545	1/2:147:0,80,67:0:0:80,67:2863,2352:-425.204,-191.734,-167.652,-233.824,0,-213.655	1/2:126:0,59,66:0:0:59,66:2103,2323:-360.502,-189.078,-171.318,-171.418,0,-151.55	1/2:136:0,80,56:0:0:80,56:2839,1933:-388.317,-157.004,-132.921,-231.316,0,-214.458	1/2:99:0,43,55:0:0:43,55:1505,1940:-280.249,-157.804,-144.859,-122.445,0,-105.889	1/1:74:0,73,0:0:0:73,0:2576,0:-231.866,-21.9752,0,-231.866,-21.9752,-231.866	1/2:74:1,39,34:1:36:39,34:1396,1193:-207.662,-94.1185,-85.3161,-110.902,0,-103.604	1/2:75:0,33,42:0:0:33,42:1180,1452:-214.18,-117.962,-108.028,-96.2163,0,-83.5731	1/1:75:0,75,0:0:0:75,0:2683,0:-241.714,-22.5773,0,-241.714,-22.5773,-241.714	1/1:72:0,72,0:0:0:72,0:2588,0:-233.168,-21.6742,0,-233.168,-21.6742,-233.168	1/2:95:0,38,56:0:0:38,56:1359,1969:-271.062,-160.246,-148.807,-110.841,0,-93.9828	1/1:65:0,65,0:0:0:65,0:2312,0:-208.338,-19.567,0,-208.338,-19.567,-208.338	1/2:97:0,39,57:0:0:39,57:1400,1999:-277.009,-162.804,-151.064,-114.346,0,-97.1874	1/2:311:0,150,158:0:0:150,158:5364,5566:-890.489,-453.106,-407.952,-437.383,0,-389.821	1/2:227:0,108,118:0:0:108,118:3871,4147:-653.204,-337.488,-304.976,-315.715,0,-280.194	1/1:128:0,128,0:0:0:128,0:4596,0:-413.803,-38.5318,0,-413.803,-38.5318,-413.803	1/2:113:0,51,61:0:0:51,61:1828,2133:-322.608,-173.515,-158.162,-149.097,0,-130.734	1/1:180:1,165,13:1:36:165,13:5903,455:-527.792,-46.7315,0,-491.084,-12.6394,-490.109	1/2:112:0,54,58:0:0:54,58:1932,2020:-321.741,-164.196,-147.94,-157.544,0,-140.085	1/1:352:0,352,0:0:0:352,0:12601,0:-1133.55,-105.963,0,-1133.55,-105.963,-1133.55	1/2:273:0,148,122:0:0:148,122:5290,4288:-780.201,-348.876,-304.324,-431.324,0,-394.598	1/2:47:1,28,18:1:36:28,18:1008,633:-130.536,-48.5869,-43.0956,-79.312,0,-76.8309	1/2:379:0,181,196:0:0:181,196:6463,6822:-1081.25,-554.339,-499.852,-526.913,0,-467.912	1/2:114:0,66,47:0:0:66,47:2363,1651:-327.08,-134.377,-114.509,-192.702,0,-178.554	1/2:125:0,54,71:0:0:54,71:1936,2491:-360.565,-202.661,-186.405,-157.904,0,-136.531	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/1:5:0,4,0:0:0:4,0:144,0:-12.9697,-1.20412,0,-12.9697,-1.20412,-12.9697	1/2:5:0,4,1:0:0:4,1:144,35:-14.9552,-3.1976,-1.99348,-12.1095,0,-11.8085	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:255:0,99,154:0:0:99,154:3556,5431:-731.924,-441.836,-412.034,-290.088,0,-243.73	1/1:112:0,109,1:0:0:109,1:3892,36:-350.155,-32.8123,0,-347.217,-29.8532,-346.916	1/2:94:0,40,52:0:0:40,52:1440,1843:-267.616,-150.117,-138.076,-117.497,0,-101.843	1/2:3:0,1,2:0:0:1,2:36,71:-8.72058,-5.78266,-5.48163,-2.93742,0,-2.33536	1/2:173:0,86,85:0:0:86,85:3076,2988:-493.967,-243.143,-217.255,-250.823,0,-225.235	1/1:60:0,60,0:0:0:60,0:2152,0:-193.947,-18.0618,0,-193.947,-18.0618,-193.947	1/2:174:0,74,97:0:0:74,97:2648,3384:-491.033,-275.099,-252.822,-215.934,0,-186.734	1/2:109:0,64,44:0:0:64,44:2291,1564:-314.283,-127.454,-108.188,-186.831,0,-173.586	1/1:73:0,72,0:0:0:72,0:2580,0:-232.198,-21.6742,0,-232.198,-21.6742,-232.198	1/1:141:0,140,0:0:0:140,0:5005,0:-450.312,-42.1442,0,-450.312,-42.1442,-450.312	1/2:144:0,68,76:0:0:68,76:2424,2657:-413.894,-216.301,-195.831,-197.946,0,-175.068	1/1:152:0,151,0:0:0:151,0:5385,0:-484.521,-45.4555,0,-484.521,-45.4555,-484.521	1/1:134:0,133,0:0:0:133,0:4752,0:-427.566,-40.037,0,-427.566,-40.037,-427.566	1/2:117:0,57,60:0:0:57,60:2048,2104:-337.957,-170.881,-153.723,-167.076,0,-149.014	1/1:214:0,212,0:0:0:212,0:7577,0:-681.658,-63.8184,0,-681.658,-63.8184,-681.658	1/2:10:0,1,9:0:0:1,9:36,317:-28.7402,-25.8023,-25.5012,-2.93742,0,-0.228147	1/1:159:0,159,0:0:0:159,0:5708,0:-513.836,-47.8638,0,-513.836,-47.8638,-513.836	1/2:86:0,38,48:0:0:38,48:1339,1667:-244.523,-135.503,-124.064,-109.021,0,-94.5717	1/2:15:0,11,4:0:0:11,4:387,138:-43.0636,-11.5557,-8.24436,-31.8546,0,-30.6505	1/2:155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chr06	28557854	.	A	G	49364.2	PASS	AB=0.509866;ABP=7.80927;AC=50;AF=0.265957;AN=188;AO=2922;CIGAR=1X;DP=11034;DPB=11034;DPRA=1.03799;EPP=6252.87;EPPR=17173.5;GTI=1;LEN=1;MEANALT=1.03448;MQM=59.3313;MQMR=59.9909;NS=94;NUMALT=1;ODDS=2.3713;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103915;QR=288873;RO=8110;RPL=2911;RPP=6252.87;RPPR=17173.5;RPR=11;RUN=1;SAF=0;SAP=6348.05;SAR=2922;SRF=0;SRP=17613.7;SRR=8110;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:14,34:14:500:34:1197:-93.5314,0,-30.8867	0/1:145:66,79:66:2360:79:2812:-209.55,0,-169.009	0/1:268:138,130:138:4907:130:4650:-336.94,0,-361.106	0/0:250:250,0:250:8895:0:0:0,-75.2575,-800.538	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.213	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:262:260,2:260:9296:2:72:0,-72.0331,-829.772	0/1:143:77,66:77:2733:66:2335:-167.328,0,-203.165	0/1:125:60,65:60:2135:65:2328:-172.131,0,-154.789	0/1:136:81,55:81:2875:55:1963:-135.95,0,-218.048	0/1:98:44,54:44:1559:54:1915:-141.836,0,-111.1	0/0:74:72,1:72:2571:1:36:0,-18.7367,-228.041	0/1:75:41,34:41:1472:34:1206:-86.2501,0,-110.199	0/1:76:34,42:34:1203:42:1500:-112.381,0,-85.6968	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:95:39,56:39:1391:56:1995:-151.142,0,-96.8904	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.44	0/1:94:40,54:40:1432:54:1914:-144.231,0,-100.881	0/1:312:154,158:154:5465:158:5575:-407.667,0,-398.06	0/1:220:105,115:105:3752:115:4085:-301.498,0,-271.654	0/0:131:130,1:130:4655:1:36:0,-35.8367,-415.513	0/1:115:53,62:53:1879:62:2202:-163.798,0,-134.77	0/0:177:164,13:164:5880:13:464:0,-11.1955,-487.223	0/1:108:49,59:49:1760:59:2097:-156.36,0,-126.173	0/0:349:349,0:349:12459:0:0:0,-105.059,-1121.15	0/1:268:146,122:146:5173:122:4339:-309.76,0,-385.039	0/1:47:28,19:28:999:19:676:-47.0196,0,-76.0761	0/1:373:183,190:183:6529:190:6761:-495.784,0,-475.41	0/1:113:66,47:66:2364:47:1676:-117.107,0,-179.002	0/1:124:53,70:53:1883:70:2504:-188.157,0,-132.361	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:26:26,0:26:901:0:0:0,-7.82678,-81.402	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/1:245:94,151:94:3346:151:5384:-410.014,0,-227.605	0/0:110:109,1:109:3883:1:36:0,-29.515,-346.067	0/1:93:42,51:42:1500:51:1824:-136.409,0,-107.299	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:172:87,85:87:3103:85:2999:-218.302,0,-227.72	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/1:175:76,99:76:2668:99:3517:-263.93,0,-187.686	0/1:111:67,44:67:2395:44:1572:-108.357,0,-182.263	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:150:150,0:150:5327:0:0:0,-45.1545,-479.079	0/1:143:68,75:68:2419:75:2654:-195.823,0,-174.919	0/0:154:154,0:154:5492:0:0:0,-46.3586,-494.41	0/0:138:138,0:138:4905:0:0:0,-41.5421,-441.603	0/1:117:58,59:58:2061:59:2109:-154.172,0,-150.539	0/0:214:214,0:214:7616:0:0:0,-64.4204,-685.481	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/0:162:162,0:162:5736:0:0:0,-48.7669,-516.359	0/1:83:36,47:36:1284:47:1680:-126.484,0,-90.8779	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:148:95,53:95:3374:53:1895:-126.178,0,-259.324	0/0:60:60,0:60:2131:0:0:0,-18.0618,-192.058	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:82:39,43:39:1378:43:1531:-113.195,0,-99.6327	0/0:116:116,0:116:4133:0:0:0,-34.9195,-372.154	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:152:152,0:152:5443:0:0:0,-45.7566,-489.942	0/0:185:185,0:185:6581:0:0:0,-55.6905,-592.375	0/1:77:44,33:44:1555:33:1184:-83.6784,0,-117.062	0/1:123:66,57:66:2363:57:2048:-147.492,0,-175.901	0/0:214:209,5:209:7444:5:176:0,-48.397,-653.984	0/0:90:89,1:89:3183:1:36:0,-23.4944,-283.095	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:148:148,0:148:5292:0:0:0,-44.5524,-476.413	0/0:88:88,0:88:3119:0:0:0,-26.4906,-280.938	0/1:22:17,5:17:612:5:180:-9.9294,0,-48.7908	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.692	0/1:78:27,51:27:968:51:1817:-140.028,0,-63.957	0/1:273:124,149:124:4416:149:5330:-397.55,0,-315.433	0/0:127:127,0:127:4526:0:0:0,-38.2308,-407.508	0/0:138:138,0:138:4885:0:0:0,-41.5421,-439.807	0/0:68:67,1:67:2395:1:32:0,-17.2707,-212.607	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/0:138:138,0:138:4919:0:0:0,-41.5421,-442.863	0/0:152:152,0:152:5399:0:0:0,-45.7566,-486.045	0/0:360:360,0:360:12823:0:0:0,-108.371,-1153.9	0/1:116:49,67:49:1739:67:2367:-178.323,0,-121.874	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/1:109:53,56:53:1876:56:1974:-145.038,0,-136.307	0/1:167:89,78:89:3176:78:2764:-198.713,0,-235.779	0/1:54:28,26:28:987:26:936:-68.2598,0,-72.8874	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.899	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/1:68:43,25:43:1522:25:884:-59.4014,0,-116.802	0/1:98:57,41:57:2027:41:1450:-101.254,0,-153.201	0/1:84:25,59:25:888:59:2054:-159.794,0,-54.9525	0/0:102:100,2:100:3539:2:68:0,-24.2474,-312.264	0/0:128:128,0:128:4558:0:0:0,-38.5318,-410.387
chr06	28612075	.	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chr06	28773759	.	T	A	36697.1	PASS	AB=0.482845;ABP=15.2287;AC=48;AF=0.258065;AN=186;AO=2321;CIGAR=1X;DP=10023;DPB=10023;DPRA=0.798594;EPP=5008.31;EPPR=16614.9;GTI=1;LEN=1;MEANALT=1.05357;MQM=45.3085;MQMR=59.9847;NS=93;NUMALT=1;ODDS=0.407548;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82125;QR=275969;RO=7698;RPL=2317;RPP=5008.31;RPPR=16614.9;RPR=4;RUN=1;SAF=2321;SAP=5043;SAR=0;SRF=7698;SRP=16719;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:96:56,40:56:2008:40:1432:-98.86,0,-152.094	0/1:71:32,39:32:1152:39:1388:-101.208,0,-82.617	0/1:104:66,38:66:2360:38:1344:-88.7049,0,-181.352	0/0:283:283,0:283:10161:0:0:0,-85.1915,-914.414	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.1	0/0:48:46,2:46:1656:2:72:0,-7.65039,-142.529	0/0:152:151,0:151:5398:0:0:0,-45.4555,-485.59	0/1:101:44,57:44:1567:57:2029:-148.954,0,-110.917	0/1:127:83,44:83:2979:44:1576:-102.406,0,-230.11	0/1:136:72,64:72:2588:64:2272:-160.697,0,-192.228	0/1:64:37,27:37:1332:27:964:-66.3109,0,-100.916	0/0:97:97,0:97:3479:0:0:0,-29.1999,-313.051	0/1:90:47,43:47:1688:43:1544:-109.526,0,-125.114	0/1:56:19,36:19:676:36:1280:-96.626,0,-44.2565	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.359	0/1:61:30,31:30:1080:31:1112:-80.6686,0,-79.1504	0/1:52:27,25:27:972:25:900:-64.3688,0,-72.1443	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:30:18,12:18:648:12:417:-28.4375,0,-49.621	0/1:230:113,117:113:4056:117:4111:-294.518,0,-295.989	0/1:168:88,80:88:3160:80:2822:-199.827,0,-234.051	0/0:204:204,0:204:7277:0:0:0,-61.4101,-654.983	0/1:165:79,86:79:2813:86:3004:-215.963,0,-203.738	0/0:86:81,5:81:2912:5:180:0,-9.59071,-246.017	0/1:91:40,51:40:1436:51:1805:-133.196,0,-102.144	0/0:267:266,1:266:9564:1:36:0,-76.8082,-857.132	0/1:316:171,145:171:6144:145:5117:-355.037,0,-457.886	0/1:26:11,15:11:396:15:532:-39.4864,0,-28.156	0/1:336:193,143:193:6924:143:5028:-347.661,0,-522.078	0/1:132:63,69:63:2260:69:2430:-175.916,0,-163.927	0/1:150:73,77:73:2628:77:2748:-197.909,0,-191.612	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:18:17,1:17:612:1:21:0,-3.31859,-53.3135	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:6:1,5:1:36:5:176:-14.2179,0,-1.79209	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/1:193:91,102:91:3258:102:3618:-264.459,0,-235.34	0/0:173:173,0:173:6195:0:0:0,-52.0782,-557.121	0/1:55:28,27:28:1008:27:956:-68.3493,0,-74.4797	.:.:.:.:.:.:.:.	0/1:137:77,60:77:2760:60:2129:-146.914,0,-207.083	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/1:183:97,86:97:3464:86:3007:-210.819,0,-256.882	0/1:71:36,34:36:1283:34:1201:-84.2123,0,-94.3456	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:217:217,0:217:7792:0:0:0,-65.3235,-701.307	0/1:111:57,54:57:2048:54:1936:-138.439,0,-151.177	0/0:197:197,0:197:7055:0:0:0,-59.3029,-635.01	0/0:164:164,0:164:5883:0:0:0,-49.3689,-529.578	0/1:83:39,44:39:1392:44:1557:-112.131,0,-100.594	0/0:185:185,0:185:6648:0:0:0,-55.6905,-598.395	0/1:8:4,4:4:144:4:144:-10.7213,0,-10.9054	0/0:148:148,0:148:5308:0:0:0,-44.5524,-477.853	0/1:78:37,41:37:1324:41:1456:-106.384,0,-95.9818	0/1:3:2,1:2:72:1:36:-2.66372,0,-5.93363	0/1:129:70,59:70:2516:59:2066:-143.964,0,-187.859	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.72	0/1:3:1,2:1:36:2:68:-5.46472,0,-2.69518	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:142:75,67:75:2684:67:2366:-167.611,0,-199.059	0/0:104:104,0:104:3744:0:0:0,-31.3071,-337.158	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:194:194,0:194:6968:0:0:0,-58.3998,-627.182	0/0:171:171,0:171:6098:0:0:0,-51.4761,-548.92	0/1:93:46,47:46:1652:47:1680:-121.415,0,-120.973	0/1:106:46,60:46:1652:60:2113:-155.175,0,-117.059	0/0:179:179,0:179:6431:0:0:0,-53.8844,-578.873	0/0:173:173,0:173:6207:0:0:0,-52.0782,-558.724	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:43:42,1:42:1512:1:36:0,-9.34601,-132.776	0/1:35:26,9:26:936:9:298:-15.6752,0,-74.023	0/0:240:240,0:240:8581:0:0:0,-72.2472,-772.286	0/1:79:37,42:37:1332:42:1463:-106.714,0,-96.401	0/1:115:65,50:65:2340:50:1780:-122.825,0,-176.24	0/0:216:216,0:216:7752:0:0:0,-65.0225,-697.709	0/0:75:74,1:74:2643:1:36:0,-18.979,-234.518	0/0:78:77,1:77:2764:1:36:0,-19.9217,-245.442	0/1:10:4,6:4:144:6:212:-16.2117,0,-10.3033	0/0:123:123,0:123:4419:0:0:0,-37.0267,-397.879	0/0:128:128,0:128:4591:0:0:0,-38.5318,-413.353	0/0:268:268,0:268:9593:0:0:0,-80.676,-863.322	0/1:69:39,30:39:1377:30:1072:-74.6129,0,-103.455	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/1:50:26,24:26:936:24:860:-61.1703,0,-69.508	0/1:139:67,72:67:2386:72:2553:-182.928,0,-173.153	0/1:24:11,13:11:387:13:464:-34.4243,0,-27.9412	0/0:93:93,0:93:3300:0:0:0,-27.9958,-297.216	0/0:90:89,1:89:3177:1:36:0,-23.4944,-282.555	0/1:52:32,20:32:1152:20:700:-46.0054,0,-88.3366	0/1:117:60,56:60:2160:56:2000:-142.019,0,-159.392	0/1:87:33,54:33:1184:54:1906:-145.433,0,-80.6787	0/0:142:142,0:142:5096:0:0:0,-42.7463,-458.782	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.768
chr06	28773778	.	T	C	37525.2	PASS	AB=0.489415;ABP=7.69938;AC=48;AF=0.258065;AN=186;AO=2373;CIGAR=1X;DP=10044;DPB=10044;DPRA=0.920573;EPP=5155.91;EPPR=16634.3;GTI=1;LEN=1;MEANALT=1.01724;MQM=45.3481;MQMR=59.9863;NS=93;NUMALT=1;ODDS=2.35541;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83992;QR=273622;RO=7667;RPL=2373;RPP=5155.91;RPPR=16634.3;RPR=0;RUN=1;SAF=2373;SAP=5155.91;SAR=0;SRF=7667;SRP=16651.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:95:55,40:55:1954:40:1406:-96.9378,0,-147.536	0/1:71:32,39:32:1125:39:1378:-100.748,0,-80.1827	0/1:105:67,38:67:2388:38:1368:-90.4378,0,-183.567	0/0:279:279,0:279:9926:0:0:0,-83.9874,-893.286	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/0:47:46,1:46:1633:1:36:0,-10.5898,-143.698	0/0:152:151,0:151:5354:0:0:0,-45.4555,-481.784	0/1:99:41,58:41:1472:58:2049:-152.317,0,-102.974	0/1:130:85,45:85:3045:45:1612:-104.713,0,-235.144	0/1:135:71,64:71:2548:64:2254:-159.456,0,-188.931	0/1:64:35,29:35:1260:29:1019:-71.3184,0,-94.4396	0/0:99:99,0:99:3504:0:0:0,-29.802,-315.571	0/1:92:48,44:48:1712:44:1557:-110.124,0,-126.671	0/1:59:20,39:20:679:39:1363:-103.445,0,-43.6636	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/1:63:32,31:32:1152:31:1080:-77.3092,0,-85.0253	0/1:52:27,25:27:964:25:851:-60.3375,0,-71.4233	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:31:18,13:18:644:13:455:-31.5143,0,-48.9587	0/1:234:111,123:111:3984:123:4361:-314.724,0,-288.308	0/1:166:83,83:83:2961:83:2952:-211.855,0,-216.751	0/0:201:200,0:200:7160:0:0:0,-60.206,-644.094	0/1:171:80,91:80:2864:91:3251:-235.481,0,-206.521	0/0:86:81,5:81:2884:5:167:0,-10.6961,-244.602	0/1:93:42,51:42:1508:51:1832:-134.457,0,-108.019	0/0:266:265,1:265:9483:1:36:0,-76.5072,-849.849	0/1:317:169,147:169:6072:147:5168:-360.024,0,-451.239	0/1:26:11,15:11:392:15:532:-39.4864,0,-27.7933	0/1:334:190,144:190:6815:144:5124:-356.664,0,-512.875	0/1:133:62,71:62:2184:71:2512:-182.858,0,-156.787	0/1:152:72,80:72:2588:80:2820:-203.956,0,-187.412	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:6:1,5:1:36:5:180:-14.5635,0,-1.79209	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:194:88,106:88:3143:106:3715:-272.954,0,-224.696	0/0:168:167,1:167:5963:1:36:0,-46.9748,-533.144	0/1:57:27,30:27:968:30:1050:-76.4352,0,-70.2787	.:.:.:.:.:.:.:.	0/1:137:76,61:76:2714:61:2169:-150.693,0,-203.103	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/1:180:95,85:95:3368:85:3021:-211.552,0,-249.151	0/1:69:36,33:36:1276:33:1175:-82.5285,0,-94.372	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:214:212,2:212:7578:2:72:0,-57.5837,-675.223	0/1:108:57,51:57:2048:51:1808:-128.347,0,-152.08	0/0:195:195,0:195:6945:0:0:0,-58.7008,-625.116	0/0:160:160,0:160:5744:0:0:0,-48.1648,-517.074	0/1:84:39,45:39:1379:45:1608:-116.333,0,-99.1215	0/0:183:182,1:182:6479:1:36:0,-51.5217,-579.63	0/1:8:4,4:4:144:4:144:-10.7213,0,-10.9054	0/0:149:149,0:149:5305:0:0:0,-44.8535,-477.583	0/1:80:38,42:38:1364:42:1482:-108.059,0,-98.8206	0/1:3:2,1:2:68:1:27:-1.7926,0,-5.55462	0/1:130:72,58:72:2561:58:2061:-142.193,0,-191.605	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.347	0/1:3:1,2:1:36:2:72:-5.76715,0,-2.69518	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:146:76,70:76:2702:70:2472:-175.78,0,-199.473	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:194:194,0:194:6886:0:0:0,-58.3998,-619.809	0/0:167:167,0:167:5974:0:0:0,-50.272,-537.766	0/1:95:49,46:49:1743:46:1644:-117.649,0,-128.556	0/1:109:44,65:44:1572:65:2297:-170.574,0,-108.959	0/0:185:185,0:185:6608:0:0:0,-55.6905,-594.799	0/0:169:169,0:169:6063:0:0:0,-50.8741,-545.77	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:43:42,1:42:1508:1:36:0,-9.34601,-132.416	0/1:34:25,9:25:896:9:324:-18.7939,0,-70.7253	0/0:242:242,0:242:8623:0:0:0,-72.8493,-776.065	0/1:76:35,41:35:1252:41:1457:-107.049,0,-90.1068	0/1:114:65,49:65:2327:49:1730:-118.759,0,-175.372	0/0:216:216,0:216:7709:0:0:0,-65.0225,-693.842	0/0:76:75,1:75:2666:1:36:0,-19.28,-236.587	0/0:77:76,1:76:2703:1:36:0,-19.6207,-239.956	0/1:10:4,6:4:144:6:207:-15.7763,0,-10.3033	0/0:121:120,0:120:4285:0:0:0,-36.1236,-385.467	0/0:126:126,0:126:4479:0:0:0,-37.9298,-403.28	0/0:269:269,0:269:9565:0:0:0,-80.9771,-860.808	0/1:71:40,31:40:1423:31:1096:-76.2027,0,-106.994	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:51:26,25:26:916:25:892:-63.7289,0,-67.4039	0/1:143:68,75:68:2435:75:2661:-191.93,0,-176.357	0/1:25:12,13:12:432:13:460:-33.7824,0,-31.6954	0/0:92:92,0:92:3287:0:0:0,-27.6948,-296.049	0/0:89:88,1:88:3156:1:36:0,-23.1934,-280.666	0/1:53:33,20:33:1167:20:720:-47.3794,0,-89.3818	0/1:122:62,60:62:2205:60:2122:-152.024,0,-161.361	0/1:88:33,55:33:1175:55:1927:-147.011,0,-79.5663	0/0:147:147,0:147:5230:0:0:0,-44.2514,-470.84	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218
chr06	28773840	.	GCCCCG	ATCCCA,ACCCCG	265504	PASS	AB=0.510411,0.483425;ABP=8.66235,17.3352;AC=138,48;AF=0.741935,0.258065;AN=186;AO=10028,2928;CIGAR=2X3M1X,1X5M;DP=13043;DPB=13043;DPRA=0,1.07571;EPP=21648.4,6291.78;EPPR=11.6962;GTI=1;LEN=6,1;MEANALT=2.29032,2.72727;MQM=40.4207,59.7107;MQMR=60;NS=93;NUMALT=2;ODDS=7.61679;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=354381,104944;QR=140;RO=4;RPL=10014,2920;RPP=21657.1,6291.78;RPPR=11.6962;RPR=14,8;RUN=1,1;SAF=1,0;SAP=21769.9,6361.08;SAR=10027,2928;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:56:0,34,22:0:0:34,22:1178,773:-152.885,-63.2622,-53.0272,-89.9646,0,-83.342	1/2:225:0,129,95:0:0:129,95:4579,3412:-626.409,-278.443,-239.61,-348.103,0,-319.505	1/2:142:0,79,63:0:0:79,63:2750,2259:-393.059,-184.574,-160.792,-208.829,0,-189.864	1/1:293:0,291,0:0:0:291,0:10274,0:-894.917,-87.5997,0,-894.917,-87.5997,-894.917	1/1:140:0,136,0:0:0:136,0:4801,0:-413.39,-40.9401,0,-413.39,-40.9401,-413.39	1/1:62:0,62,0:0:0:62,0:2163,0:-183.447,-18.6639,0,-183.447,-18.6639,-183.447	1/1:161:0,160,0:0:0:160,0:5660,0:-492.053,-48.1648,0,-492.053,-48.1648,-492.053	1/2:263:0,132,128:0:0:132,128:4643,4600:-722.709,-375.321,-335.585,-347.438,0,-308.906	1/2:156:0,84,69:0:0:84,69:2982,2450:-426.201,-199.689,-174.403,-226.582,0,-205.811	1/2:197:0,104,93:0:0:104,93:3634,3335:-556.418,-272.367,-241.06,-284.399,0,-256.403	1/2:53:0,28,24:0:0:28,24:978,860:-146.892,-70.1442,-61.7153,-76.7467,0,-69.522	1/1:62:0,59,0:0:0:59,0:2091,0:-174.573,-17.7608,0,-174.573,-17.7608,-174.573	1/2:85:0,50,34:0:0:50,34:1789,1224:-236.065,-99.6963,-84.6448,-136.359,0,-126.124	1/2:64:0,30,34:0:0:30,34:1075,1224:-183.941,-100.232,-91.2011,-84.0605,0,-73.8255	1/1:86:0,86,0:0:0:86,0:3063,0:-266.469,-25.8886,0,-266.469,-25.8886,-266.469	1/2:34:0,11,23:0:0:11,23:382,828:-96.698,-67.9158,-64.6045,-29.118,0,-22.1943	1/2:64:0,38,26:0:0:38,26:1351,936:-179.306,-76.6027,-65.1636,-103.052,0,-95.2253	1/1:61:0,61,0:0:0:61,0:2158,0:-180.062,-18.3628,0,-180.062,-18.3628,-180.062	1/2:22:0,10,12:0:0:10,12:359,415:-60.1456,-34.0676,-31.0573,-26.4116,0,-22.7992	1/2:314:0,153,160:0:0:153,160:5434,5736:-891.908,-467.904,-421.847,-424.074,0,-375.909	1/2:208:0,100,108:0:0:100,108:3515,3876:-590.291,-316.464,-286.361,-274.175,0,-241.664	1/1:216:0,214,0:0:0:214,0:7516,0:-662.131,-64.4204,0,-662.131,-64.4204,-662.131	1/2:146:0,55,90:0:0:55,90:1951,3217:-415.291,-262.406,-245.849,-152.983,0,-125.89	1/1:234:0,221,11:0:0:221,11:7869,392:-675.704,-66.5276,0,-643.751,-34.535,-640.439	1/2:80:0,40,40:0:0:40,40:1415,1432:-227.5,-117.133,-105.092,-110.716,0,-98.6749	1/1:523:0,521,1:0:0:521,1:18385,36:-1617.81,-156.837,0,-1614.87,-153.894,-1614.57	1/2:265:0,147,116:0:0:147,116:5203,4168:-739.499,-340.063,-295.811,-399.541,0,-364.621	1/2:48:0,23,25:0:0:23,25:805,896:-135.893,-73.4346,-66.5109,-62.8042,0,-55.2785	1/2:351:0,175,175:0:0:175,175:6211,6258:-1005.47,-510.34,-457.66,-495.203,0,-442.523	1/2:303:1,185,115:1:36:185,115:6548,4128:-841.795,-333.736,-280.983,-505.45,0,-473.769	1/2:157:0,86,71:0:0:86,71:3030,2540:-447.381,-207.437,-181.548,-240.295,0,-218.922	1/1:13:0,13,0:0:0:13,0:459,0:-40.1315,-3.91339,0,-40.1315,-3.91339,-40.1315	1/1:5:0,5,0:0:0:5,0:168,0:-14.9107,-1.50515,0,-14.9107,-1.50515,-14.9107	1/1:8:0,8,0:0:0:8,0:288,0:-24.7295,-2.40824,0,-24.7295,-2.40824,-24.7295	1/2:8:0,6,2:0:0:6,2:216,72:-22.6249,-6.23466,-4.42848,-16.7444,0,-16.1424	1/1:9:0,9,0:0:0:9,0:324,0:-27.6598,-2.70927,0,-27.6598,-2.70927,-27.6598	1/2:266:0,136,128:0:0:136,128:4829,4604:-759.904,-375.701,-334.761,-384.271,0,-345.739	1/1:388:0,381,0:0:0:381,0:13438,0:-1152.3,-114.692,0,-1152.3,-114.692,-1152.3	1/2:37:0,23,14:0:0:23,14:808,504:-103.371,-41.4755,-34.5518,-62.245,0,-58.0306	.:.:.:.:.:.:.:.	1/2:210:0,104,105:0:0:104,105:3680,3764:-590.725,-306.922,-275.615,-283.869,0,-252.261	1/1:35:0,35,0:0:0:35,0:1258,0:-108.38,-10.5361,0,-108.38,-10.5361,-108.38	1/2:206:0,96,110:0:0:96,110:3346,3952:-576.112,-322.599,-293.7,-253.855,0,-220.742	1/2:87:0,46,41:0:0:46,41:1637,1476:-248.605,-120.778,-106.93,-128.179,0,-115.837	1/1:90:0,90,0:0:0:90,0:3159,0:-275.627,-27.0927,0,-275.627,-27.0927,-275.627	1/1:131:0,130,0:0:0:130,0:4577,0:-403.615,-39.1339,0,-403.615,-39.1339,-403.615	1/2:224:0,121,103:0:0:121,103:4227,3692:-618.662,-301.441,-265.016,-317.564,0,-286.557	1/1:302:0,300,0:0:0:300,0:10601,0:-922.809,-90.309,0,-922.809,-90.309,-922.809	1/1:209:0,208,0:0:0:208,0:7311,0:-636.847,-62.6142,0,-636.847,-62.6142,-636.847	1/2:180:0,90,90:0:0:90,90:3183,3224:-514.429,-263.289,-236.197,-251.491,0,-224.398	1/1:267:0,263,0:0:0:263,0:9322,0:-821.184,-79.1709,0,-821.184,-79.1709,-821.184	1/1:6:0,6,0:0:0:6,0:215,0:-19.19,-1.80618,0,-19.19,-1.80618,-19.19	1/1:211:0,211,0:0:0:211,0:7504,0:-633.902,-63.5173,0,-633.902,-63.5173,-633.902	1/2:42:0,25,17:0:0:25,17:877,611:-119.671,-50.1395,-42.6138,-69.8832,0,-64.7657	1/2:33:0,15,18:0:0:15,18:529,644:-91.4051,-52.8721,-48.3566,-38.8696,0,-33.451	1/2:178:0,83,95:0:0:83,95:2948,3408:-507.716,-278.336,-253.351,-229.729,0,-201.131	1/1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chr06	28774121	.	A	C	18746	PASS	AB=0.48627;ABP=6.88629;AC=50;AF=0.265957;AN=188;AO=1161;CIGAR=1X;DP=5087;DPB=5087;DPRA=0.895511;EPP=2524.09;EPPR=8523.87;GTI=1;LEN=1;MEANALT=1.01818;MQM=59.9785;MQMR=59.988;NS=94;NUMALT=1;ODDS=2.71817;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41387;QR=140662;RO=3924;RPL=1161;RPP=2524.09;RPPR=8523.87;RPR=0;RUN=1;SAF=0;SAP=2524.09;SAR=1161;SRF=0;SRP=8523.87;SRR=3924;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:13,9:13:460:9:324:-22.8832,0,-35.1127	0/1:69:36,33:36:1288:33:1188:-86.4575,0,-95.4525	0/1:64:23,41:23:828:41:1450:-111.527,0,-55.5782	0/0:109:109,0:109:3893:0:0:0,-32.8123,-350.56	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:58:57,0:57:2052:0:0:0,-17.1587,-184.631	0/1:82:46,36:46:1656:36:1296:-92.2595,0,-124.644	0/1:64:35,29:35:1260:29:1033:-74.0156,0,-94.4396	0/1:54:23,31:23:820:31:1116:-84.4961,0,-57.8669	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:18:6,12:6:216:12:416:-32.3523,0,-14.372	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:22:16,6:16:576:6:208:-12.4358,0,-45.5523	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:144:67,77:67:2387:77:2749:-204.302,0,-171.739	0/1:44:30,14:30:1076:14:481:-30.3697,0,-83.9075	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/1:68:39,29:39:1396:29:1040:-73.4443,0,-105.469	0/0:50:46,4:46:1644:4:144:0,-1.73788,-134.935	0/1:67:32,35:32:1152:35:1252:-92.8161,0,-83.8211	0/0:237:237,0:237:8512:0:0:0,-71.3441,-766.075	0/1:101:65,36:65:2323:36:1288:-85.8196,0,-178.921	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:124:60,64:60:2156:64:2273:-167.503,0,-156.979	0/1:142:70,72:70:2512:72:2583:-189.973,0,-183.586	0/1:101:45,56:45:1616:56:1974:-147.527,0,-115.326	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:4,8:4:140:8:288:-22.6504,0,-9.33222	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:42:20,22:20:720:22:792:-58.9624,0,-52.4855	0/0:164:164,0:164:5892:0:0:0,-49.3689,-530.387	0/1:18:10,8:10:351:8:288:-20.8489,0,-26.5081	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:89:47,42:47:1688:42:1499:-108.412,0,-125.415	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:91:52,39:52:1868:39:1396:-98.5454,0,-141.006	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:71:35,36:35:1256:36:1273:-93.4978,0,-91.9722	0/0:123:123,0:123:4389:0:0:0,-37.0267,-395.183	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/1:75:31,44:31:1116:44:1580:-119.914,0,-78.1744	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.856	0/1:7:2,5:2:72:5:166:-13.1584,0,-4.72951	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:52:26,26:26:936:26:921:-67.5516,0,-68.9059	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:68:31,37:31:1104:37:1312:-97.9116,0,-79.2006	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:91:43,48:43:1540:48:1716:-127.332,0,-111.499	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/0:119:115,3:115:4132:3:108:0,-25.7763,-361.997	0/1:41:29,12:29:1040:12:432:-26.879,0,-81.5721	0/1:49:30,19:30:1080:19:680:-46.7787,0,-82.7628	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/0:113:112,1:112:4016:1:36:0,-30.4181,-358.03	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:38:21,17:21:756:17:612:-43.9743,0,-56.9281	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:145:84,61:84:3004:61:2157:-150.737,0,-226.942	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:132:131,1:131:4684:1:36:0,-36.1377,-418.123	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:58:57,1:57:2029:1:36:0,-13.8615,-179.282	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:148:148,0:148:5311:0:0:0,-44.5524,-478.122	0/1:48:23,25:23:828:25:887:-65.6987,0,-60.3947	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/1:11:7,4:7:244:4:144:-10.0023,0,-18.9881	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	0/1:21:11,10:11:396:10:352:-25.6966,0,-29.6611	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/1:36:25,11:25:887:11:392:-24.783,0,-69.311	0/1:7:2,5:2:72:5:165:-13.0664,0,-4.72951	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292
chr06	28835741	.	GGAGAGG	GGAGAAG,TGAGAAG	144793	PASS	AB=0.544161,0.449884;ABP=54.2184,68.9583;AC=138,48;AF=0.741935,0.258065;AN=186;AO=5311,1385;CIGAR=5M1X1M,1X4M1X1M;DP=6736;DPB=6736;DPRA=12.192,1.16464;EPP=11509.7,2993.15;EPPR=13.8677;GTI=3;LEN=1,7;MEANALT=1.95652,2.32759;MQM=59.9767,59.9531;MQMR=60;NS=93;NUMALT=2;ODDS=8.35728;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=190113,49109;QR=178;RO=5;RPL=5308,1383;RPP=11509.7,2993.15;RPPR=13.8677;RPR=3,2;RUN=1,1;SAF=5311,1385;SAP=11535.7,3010.5;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,19,20:0:0:19,20:684,697:-112.847,-57.0301,-51.3105,-56.1708,0,-50.1502	1/2:46:0,23,22:0:0:23,22:828,792:-132.194,-64.6334,-57.7097,-67.5708,0,-60.9482	1/2:72:0,41,31:0:0:41,31:1472,1112:-211.135,-91.0594,-78.7172,-120.434,0,-111.102	1/1:189:0,187,0:0:0:187,0:6713,0:-603.97,-56.2926,0,-603.97,-56.2926,-603.97	1/1:41:0,41,0:0:0:41,0:1476,0:-133.136,-12.3422,0,-133.136,-12.3422,-133.136	1/1:13:0,13,0:0:0:13,0:468,0:-42.4514,-3.91339,0,-42.4514,-3.91339,-42.4514	1/1:70:0,70,0:0:0:70,0:2493,0:-224.621,-21.0721,0,-224.621,-21.0721,-224.621	1/2:83:0,52,31:0:0:52,31:1868,1075:-240.093,-87.6985,-72.045,-152.746,0,-143.414	1/2:109:0,51,58:0:0:51,58:1811,2039:-313.883,-166.319,-150.966,-147.917,0,-130.458	1/2:71:0,29,41:0:0:29,41:1036,1435:-201.21,-116.74,-108.011,-84.4643,0,-72.1221	1/2:30:0,23,7:0:0:23,7:828,252:-88.4823,-20.9217,-13.9981,-67.9204,0,-65.8132	1/1:87:0,87,0:0:0:87,0:3127,0:-281.655,-26.1896,0,-281.655,-26.1896,-281.655	1/2:62:0,28,34:0:0:28,34:1008,1211:-181.31,-99.0605,-90.6317,-82.6075,0,-72.3725	1/2:52:0,22,30:0:0:22,30:792,1067:-151.935,-87.3103,-80.6877,-64.983,0,-55.9521	1/1:52:0,52,0:0:0:52,0:1860,0:-167.68,-15.6536,0,-167.68,-15.6536,-167.68	1/2:48:0,23,24:0:0:23,24:820,851:-136.168,-69.3251,-62.4014,-66.8391,0,-59.6144	1/2:23:0,11,12:0:0:11,12:396,424:-67.1988,-34.8841,-31.5727,-32.6714,0,-29.0591	1/1:27:0,26,1:0:0:26,1:936,36:-84.1996,-7.82678,0,-81.2622,-4.52954,-80.9612	1/2:15:0,6,9:0:0:6,9:216,320:-44.0594,-26.4331,-24.6269,-17.9843,0,-15.2751	1/2:96:0,56,40:0:0:56,40:1990,1415:-277.767,-115.605,-98.7477,-162.516,0,-150.475	1/2:132:0,70,62:0:0:70,62:2497,2182:-381.534,-177.979,-156.907,-203.909,0,-185.245	1/1:92:1,91,0:1:36:91,0:3268,0:-290.741,-24.0965,0,-291.042,-27.3937,-293.98	1/2:117:2,64,50:2:70:64,50:2287,1754:-322.925,-137.055,-123.485,-180.792,0,-171.436	1/1:104:0,96,7:0:0:96,7:3410,252:-306.753,-28.8989,0,-286.191,-8.33696,-284.084	1/2:56:0,30,26:0:0:30,26:1076,932:-164.136,-76.3721,-67.3412,-88.122,0,-80.2952	1/1:227:0,226,0:0:0:226,0:8101,0:-728.74,-68.0328,0,-728.74,-68.0328,-728.74	1/2:125:0,63,59:0:0:63,59:2264,2082:-354.228,-169.527,-150.562,-184.698,0,-166.937	1/2:25:0,13,12:0:0:13,12:468,432:-73.7953,-35.6088,-31.6954,-38.5463,0,-34.9339	1/2:179:0,112,67:0:0:112,67:4009,2383:-521.428,-194.559,-160.843,-327.226,0,-307.057	1/2:102:1,66,35:1:36:66,35:2372,1232:-290.558,-97.3486,-80.4183,-190.568,0,-182.969	1/2:87:0,61,26:0:0:61,26:2196,928:-255.196,-76.0115,-57.6486,-179.542,0,-171.716	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	2/2:6:0,0,6:0:0:0,6:0,216:-19.7905,-19.7905,-19.7905,-1.80618,-1.80618,0	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:148:0,91,56:0:0:91,56:3249,1991:-427.126,-162.246,-134.852,-264.876,0,-248.019	1/1:98:0,97,1:0:0:97,1:3467,36:-311.882,-29.1999,0,-308.945,-25.9027,-308.643	1/2:29:0,16,13:0:0:16,13:576,459:-84.7332,-37.7307,-32.9142,-47.3585,0,-43.4451	.:.:.:.:.:.:.:.	1/2:125:0,84,41:0:0:84,41:2996,1472:-364.662,-120.434,-95.1474,-244.586,0,-232.244	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/2:83:0,39,43:0:0:39,43:1381,1516:-235.92,-123.427,-111.686,-112.487,0,-99.5426	1/2:41:0,18,22:0:0:18,22:640,779:-115.606,-63.4498,-58.0313,-52.1512,0,-45.5285	1/1:48:0,48,0:0:0:48,0:1724,0:-155.445,-14.4494,0,-155.445,-14.4494,-155.445	1/1:98:0,98,0:0:0:98,0:3478,0:-313.23,-29.5009,0,-313.23,-29.5009,-313.23	1/2:90:0,48,42:0:0:48,42:1728,1490:-262.749,-121.75,-107.3,-141.356,0,-128.713	1/1:187:0,186,1:0:0:186,1:6647,36:-597.91,-55.9916,0,-594.972,-52.6943,-594.671	1/1:66:0,66,0:0:0:66,0:2359,0:-212.568,-19.868,0,-212.568,-19.868,-212.568	1/2:106:0,72,34:0:0:72,34:2569,1198:-307.319,-97.889,-76.2148,-209.784,0,-199.549	1/1:97:0,96,0:0:0:96,0:3415,0:-307.203,-28.8989,0,-307.203,-28.8989,-307.203	1/1:4:0,1,0:0:0:1,0:36,0:-3.24011,-0.30103,0,-3.24011,-0.30103,-3.24011	1/1:83:0,82,1:0:0:82,1:2936,36:-264.115,-24.6845,0,-261.177,-21.3872,-260.876	1/2:40:0,17,23:0:0:17,23:612,828:-117.857,-67.9204,-62.8029,-50.2959,0,-43.3722	1/2:9:0,2,7:0:0:2,7:72,237:-25.4314,-19.5518,-18.9498,-6.23466,0,-4.12745	1/2:113:0,62,50:0:0:62,50:2228,1774:-326.292,-144.529,-125.865,-181.76,0,-166.709	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/1:1:0,1,0:0:0:1,0:36,0: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chr06	28835766	.	G	A	97417.9	PASS	AB=0.530484;ABP=26.0459;AC=133;AF=0.715054;AN=186;AO=4668;CIGAR=1X;DP=6049;DPB=6049;DPRA=9.56825;EPP=10052.8;EPPR=2975.81;GTI=4;LEN=1;MEANALT=1;MQM=59.9704;MQMR=59.9602;NS=93;NUMALT=1;ODDS=0.0336781;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164960;QR=48983;RO=1381;RPL=4658;RPP=10052.8;RPPR=2975.81;RPR=10;RUN=1;SAF=4668;SAP=10139.4;SAR=0;SRF=1381;SRP=3001.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:19,17:19:639:17:612:-44.5764,0,-46.9866	0/1:33:23,10:23:816:10:351:-21.9927,0,-63.8195	0/1:56:32,24:32:1144:24:856:-60.5025,0,-86.4118	1/1:179:0,179:0:0:179:6328:-569.612,-53.8844,0	1/1:41:1,40:1:36:40:1424:-124.859,-8.74396,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:66:1,65:1:36:65:2287:-202.492,-16.2697,0	0/1:62:28,34:28:996:34:1204:-90.002,0,-71.2828	0/1:84:54,30:54:1917:30:1027:-67.4455,0,-147.519	0/1:73:44,29:44:1567:29:1040:-71.9392,0,-119.346	0/1:26:7,19:7:243:19:676:-53.3412,0,-14.3807	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	0/1:46:32,14:32:1148:14:492:-30.765,0,-89.7825	0/1:51:29,22:29:1028:22:780:-55.1705,0,-77.4805	1/1:50:0,50:0:0:50:1780:-160.483,-15.0515,0	0/1:46:24,22:24:851:22:783:-56.9462,0,-63.0621	0/1:18:12,6:12:423:6:208:-13.6405,0,-32.9865	1/1:19:1,18:1:36:18:640:-54.331,-2.1213,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:94:38,56:38:1347:56:1954:-147.836,0,-93.2327	0/1:128:63,65:63:2211:65:2271:-166.117,0,-160.721	1/1:86:0,86:0:0:86:3023:-272.299,-25.8886,0	0/1:113:51,62:51:1795:62:2172:-161.724,0,-127.807	0/1:99:10,89:10:356:89:3151:-254.015,0,-2.57928	0/1:58:28,30:28:1000:30:1068:-78.9723,0,-72.8556	1/1:213:0,213:0:0:213:7513:-676.196,-64.1194,0	0/1:118:60,58:60:2133:58:2038:-148.167,0,-156.71	0/1:24:12,12:12:432:12:424:-31.2717,0,-31.9965	0/1:176:67,109:67:2377:109:3836:-292.457,0,-161.205	0/1:94:36,58:36:1226:58:2039:-155.478,0,-82.3373	0/1:83:25,58:25:883:58:2049:-159.695,0,-54.802	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:144:55,89:55:1945:89:3192:-244.155,0,-131.976	1/1:89:0,89:0:0:89:3120:-281.027,-26.7917,0	0/1:21:12,9:12:428:9:316:-22.4572,0,-32.5372	.:.:.:.:.:.:.:.	0/1:115:40,75:40:1436:75:2651:-204.219,0,-94.9192	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:79:45,34:45:1600:34:1163:-81.1891,0,-120.506	0/1:42:23,19:23:824:19:684:-49.2471,0,-61.8401	1/1:44:1,43:1:36:43:1532:-134.575,-9.64705,0	1/1:92:0,92:0:0:92:3254:-293.08,-27.6948,0	0/1:79:43,36:43:1521:36:1273:-91.0896,0,-113.4	1/1:172:0,172:0:0:172:6059:-545.407,-51.7772,0	1/1:60:0,60:0:0:60:2132:-192.148,-18.0618,0	0/1:100:34,66:34:1199:66:2345:-181.205,0,-78.1118	1/1:90:0,90:0:0:90:3189:-287.233,-27.0927,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:39:22,17:22:769:17:604:-42.9504,0,-57.7884	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:108:49,59:49:1747:59:2092:-156.036,0,-124.989	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:63:36,27:36:1292:27:964:-68.1119,0,-97.6189	1/1:68:0,68:0:0:68:2406:-216.797,-20.47,0	0/1:5:1,4:1:36:4:136:-11.0704,0,-2.09312	1/1:197:1,196:1:36:196:6922:-619.297,-55.7046,0	1/1:157:0,157:0:0:157:5573:-501.693,-47.2617,0	0/1:48:24,24:24:856:24:851:-62.46,0,-62.9117	0/1:55:20,35:20:707:35:1221:-93.6337,0,-47.3979	1/1:149:1,148:1:27:148:5230:-468.14,-42.1537,0	1/1:122:2,120:2:72:120:4258:-376.562,-29.8889,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:28:0,28:0:0:28:992:-89.5944,-8.42884,0	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	1/1:41:0,41:0:0:41:1456:-131.336,-12.3422,0	0/1:33:25,8:25:896:8:284:-15.9694,0,-71.0264	0/1:90:50,40:50:1765:40:1424:-101.365,0,-132.039	1/1:174:0,174:0:0:174:6153:-553.874,-52.3792,0	1/1:67:0,67:0:0:67:2306:-207.798,-20.169,0	1/1:49:0,49:0:0:49:1722:-155.261,-14.7505,0	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	1/1:85:0,85:0:0:85:3029:-272.841,-25.5876,0	1/1:60:0,60:0:0:60:2109:-190.078,-18.0618,0	1/1:171:0,171:0:0:171:6019:-541.821,-51.4761,0	0/1:43:18,25:18:635:25:879:-66.4825,0,-44.5324	1/1:50:0,50:0:0:50:1775:-160.032,-15.0515,0	0/1:34:13,21:13:464:21:743:-56.9583,0,-31.8625	0/1:86:44,42:44:1564:42:1512:-110.486,0,-115.163	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	1/1:33:0,33:0:0:33:1152:-103.982,-9.93399,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:23:12,11:12:432:11:392:-28.6964,0,-32.2975	0/1:49:29,20:29:1044:20:695:-48.1209,0,-79.5243	0/1:49:32,17:32:1140:17:596:-39.2173,0,-88.1587	1/1:143:1,142:1:36:142:4960:-442.954,-39.449,0	1/1:75:0,75:0:0:75:2671:-240.607,-22.5773,0
chr06	28835910	.	G	C	225931	PASS	AB=0.507416;ABP=6.1987;AC=137;AF=0.728723;AN=188;AO=10700;CIGAR=1X;DP=14008;DPB=14008;DPRA=75.3011;EPP=23237.8;EPPR=7134.17;GTI=1;LEN=1;MEANALT=1.07527;MQM=59.9753;MQMR=59.95;NS=94;NUMALT=1;ODDS=3.03914;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=381894;QR=117640;RO=3300;RPL=0;RPP=23237.8;RPPR=7134.17;RPR=10700;RUN=1;SAF=10700;SAP=23237.8;SAR=0;SRF=3300;SRP=7168.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:17,12:17:597:12:428:-30.1289,0,-45.3082	0/1:116:62,54:62:2201:54:1871:-133.745,0,-163.434	0/1:205:88,117:88:3156:117:4187:-315.3,0,-222.553	1/1:398:1,397:1:36:397:14142:-1268.95,-116.212,0	1/1:77:0,77:0:0:77:2760:-248.639,-23.1793,0	1/1:107:0,107:0:0:107:3824:-344.358,-32.2102,0	1/1:262:0,262:0:0:262:9366:-842.904,-78.8699,0	0/1:197:95,102:95:3389:102:3652:-269.581,0,-245.921	0/1:130:56,74:56:1981:74:2647:-199.338,0,-139.429	0/1:129:60,69:60:2137:69:2463:-183.091,0,-153.763	0/1:115:57,58:57:2039:58:2080:-152.852,0,-149.163	1/1:88:0,88:0:0:88:3143:-283.095,-26.4906,0	0/1:93:42,51:42:1508:51:1824:-136.445,0,-108.019	0/1:117:53,64:53:1885:64:2275:-169.791,0,-134.706	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	0/1:67:31,36:31:1093:36:1296:-96.7749,0,-78.5087	0/1:107:59,48:59:2116:48:1711:-122.065,0,-158.499	1/1:82:0,82:0:0:82:2923:-263.305,-24.6845,0	0/1:56:26,30:26:923:30:1076:-80.2952,0,-66.5291	0/1:280:151,128:151:5382:128:4573:-327.378,0,-400.163	0/1:197:90,107:90:3199:107:3828:-285.414,0,-228.823	1/1:114:0,114:0:0:114:4068:-366.308,-34.3174,0	0/1:49:23,26:23:828:26:936:-69.809,0,-60.0936	1/1:80:3,77:3:108:77:2752:-237.847,-14.0072,0	0/1:90:56,34:56:1989:34:1190:-80.3108,0,-152.19	1/1:643:1,640:1:36:640:22820:-2049.65,-189.698,0	0/1:361:175,186:175:6230:186:6650:-489.906,0,-452.122	0/1:54:28,26:28:1008:26:920:-66.8596,0,-74.7807	0/1:559:249,310:249:8902:310:11077:-828.547,0,-632.884	0/1:196:88,108:88:3152:108:3847:-287.426,0,-224.903	0/1:237:109,128:109:3867:128:4574:-340.479,0,-276.879	1/1:19:0,19:0:0:19:676:-61.1676,-5.71957,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:14:0,14:0:0:14:487:-44.1592,-4.21442,0	0/1:11:6,5:6:208:5:180:-13.2407,0,-15.7478	1/1:27:0,27:0:0:27:940:-84.9108,-8.12781,0	0/1:235:118,117:118:4232:117:4176:-305.281,0,-310.314	1/1:266:1,265:1:36:265:9477:-849.288,-76.4757,0	0/1:106:54,52:54:1932:52:1860:-135.77,0,-142.247	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:266:111,155:111:3965:155:5540:-418.649,0,-276.966	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	0/1:159:83,76:83:2971:76:2715:-196.729,0,-219.755	0/1:97:57,40:57:2025:40:1440:-100.698,0,-153.321	1/1:92:0,92:0:0:92:3249:-292.633,-27.6948,0	1/1:119:0,118:0:0:118:4215:-379.171,-35.5215,0	0/1:193:100,93:100:3562:93:3312:-240.169,0,-262.687	1/1:275:0,275:0:0:275:9775:-879.692,-82.7833,0	1/1:158:0,158:0:0:158:5660:-509.5,-47.5627,0	0/1:284:143,141:143:5094:141:5053:-369.42,0,-373.104	1/1:176:1,174:1:36:174:6231:-557.361,-49.3665,0	0/1:27:11,16:11:392:16:576:-44.0472,0,-27.4922	1/1:180:0,180:0:0:180:6442:-579.866,-54.1854,0	0/1:36:16,20:16:572:20:716:-53.9306,0,-40.9763	0/1:30:21,9:21:733:9:316:-19.748,0,-57.2588	0/1:240:131,109:131:4669:109:3866:-275.861,0,-348.125	1/1:85:0,85:0:0:85:3031:-273.02,-25.5876,0	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	1/1:34:0,34:0:0:34:1215:-109.656,-10.235,0	0/1:112:43,69:43:1529:69:2463:-188.206,0,-104.186	1/1:187:1,186:1:32:186:6670:-597.177,-53.0933,0	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	1/1:382:0,382:0:0:382:13650:-1228.28,-114.993,0	1/1:273:0,272:0:0:272:9729:-875.197,-81.8802,0	0/1:79:33,46:33:1184:46:1644:-124.467,0,-83.0869	0/1:207:127,80:127:4500:80:2868:-196.038,0,-342.853	1/1:253:0,253:0:0:253:9029:-812.588,-76.1606,0	1/1:116:0,116:0:0:116:4140:-372.785,-34.9195,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:130:0,130:0:0:130:4638:-417.583,-39.1339,0	1/1:128:1,127:1:36:127:4539:-405.094,-34.9488,0	0/1:41:17,23:17:608:23:804:-60.276,0,-42.6511	1/1:163:1,162:1:36:162:5733:-512.493,-45.4696,0	0/1:85:50,35:50:1747:35:1256:-87.7577,0,-131.92	0/1:264:123,140:123:4404:140:4983:-369.195,0,-317.111	1/1:338:0,338:0:0:338:12076:-1086.69,-101.748,0	1/1:203:0,203:0:0:203:7234:-651.116,-61.1091,0	1/1:206:1,205:1:36:205:7331:-657.466,-59.6386,0	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	1/1:205:0,205:0:0:205:7319:-658.762,-61.7112,0	1/1:233:2,231:2:72:231:8244:-735.114,-63.3033,0	1/1:379:0,379:0:0:379:13511:-1215.77,-114.09,0	0/1:127:59,68:59:2124:68:2431:-180.814,0,-152.42	1/1:72:0,72:0:0:72:2575:-231.999,-21.6742,0	0/1:106:54,52:54:1927:52:1860:-135.77,0,-141.797	0/1:155:78,77:78:2769:77:2751:-201.172,0,-202.791	0/1:46:21,25:21:752:25:888:-66.3916,0,-54.0525	1/1:122:0,122:0:0:122:4336:-390.381,-36.7257,0	1/1:86:0,86:0:0:86:3079:-277.337,-25.8886,0	0/1:88:39,49:39:1400:49:1752:-131.473,0,-99.8085	0/1:163:87,76:87:3071:76:2693:-193.546,0,-227.538	0/1:81:52,29:52:1856:29:1027:-68.3587,0,-142.936	1/1:235:0,235:0:0:235:8388:-754.929,-70.7421,0	1/1:105:0,105:0:0:105:3754:-338.059,-31.6082,0
chr06	28835999	.	TTT	TTG,CTG	217953	PASS	AB=0.498695,0.497289;ABP=3.08401,3.32824;AC=139,49;AF=0.739362,0.260638;AN=188;AO=7681,2505;CIGAR=2M1X,1X1M1X;DP=10223;DPB=10223;DPRA=0,1.01977;EPP=16647.4,5416.52;EPPR=25.3454;GTI=1;LEN=1,3;MEANALT=1.85106,2.25862;MQM=59.9876,59.9621;MQMR=58;NS=94;NUMALT=2;ODDS=6.70648;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=274061,88126;QR=423;RO=14;RPL=2,3;RPP=16664.7,5416.52;RPPR=25.3454;RPR=7679,2502;RUN=1,1;SAF=2,0;SAP=16664.7,5442.55;SAR=7679,2505;SRF=0;SRP=33.4109;SRR=14;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:89:0,19,67:0:0:19,67:660,2375:-247.207,-193.554,-187.835,-53.7119,0,-33.5429	1/2:183:1,86,96:1:28:86,96:3074,3397:-524.891,-274.547,-250.876,-248.501,0,-221.82	1/2:122:0,65,57:0:0:65,57:2305,2019:-352.612,-164.823,-145.256,-188.143,0,-170.984	1/1:228:0,228,0:0:0:228,0:8160,0:-734.412,-68.6348,0,-734.412,-68.6348,-734.412	1/1:92:0,92,0:0:0:92,0:3266,0:-294.159,-27.6948,0,-294.159,-27.6948,-294.159	1/1:46:1,45,0:1:27:45,0:1594,0:-140.82,-11.1476,0,-141.121,-13.5464,-143.248	1/1:177:0,176,0:0:0:176,0:6271,0:-564.126,-52.9813,0,-564.126,-52.9813,-564.126	1/2:137:0,60,73:0:0:60,73:2148,2524:-380.229,-205.056,-186.994,-175.166,0,-153.191	1/2:125:0,56,69:0:0:56,69:1997,2412:-359.354,-196.563,-179.706,-163.144,0,-142.373	1/2:81:0,42,39:0:0:42,39:1503,1381:-235.413,-112.848,-100.205,-122.921,0,-111.18	1/2:42:0,19,23:0:0:19,23:680,822:-122.831,-67.3794,-61.6598,-55.8096,0,-48.8859	1/1:80:0,80,0:0:0:80,0:2812,0:-253.318,-24.0824,0,-253.318,-24.0824,-253.318	1/2:86:0,40,45:0:0:40,45:1423,1608:-247.071,-131.102,-119.061,-115.966,0,-102.419	1/2:56:0,31,25:0:0:31,25:1116,882:-163.236,-72.1718,-62.8399,-91.4198,0,-83.894	1/1:62:1,60,0:1:36:60,0:2156,0:-190.747,-15.0845,0,-191.048,-18.0618,-193.986	1/2:51:0,25,26:0:0:25,26:896,928:-149.089,-76.0117,-68.4859,-73.4346,0,-65.6078	1/2:39:1,19,19:1:36:19,19:658,667:-104.511,-51.3384,-48.5567,-50.5244,0,-47.743	1/1:51:0,50,0:0:0:50,0:1800,0:-161.922,-15.0515,0,-161.922,-15.0515,-161.922	1/2:44:0,24,20:0:0:24,20:864,698:-127.625,-57.1206,-49.8958,-70.8578,0,-64.8372	1/2:241:0,106,134:0:0:106,134:3808,4751:-697.705,-387.055,-355.146,-310.647,0,-270.309	1/2:153:0,78,74:0:0:78,74:2800,2604:-440.375,-211.971,-188.491,-228.399,0,-206.123	1/1:116:0,116,0:0:0:116,0:4142,0:-372.964,-34.9195,0,-372.964,-34.9195,-372.964	1/2:122:0,76,46:0:0:76,46:2709,1602:-351.441,-130.618,-107.74,-221.174,0,-207.327	1/1:144:1,130,13:1:36:130,13:4630,441:-413.283,-36.195,0,-377.825,-3.39277,-376.849	1/2:140:0,64,75:0:0:64,75:2287,2620:-399.582,-213.111,-193.845,-186.465,0,-163.888	1/1:355:2,353,0:2:48:353,0:12614,0:-1130.53,-102.306,0,-1131.13,-106.264,-1134.85	1/2:288:2,164,122:2:72:164,122:5857,4252:-816.82,-339.902,-296.408,-471.638,0,-440.787	1/2:50:0,22,28:0:0:22,28:788,987:-144.979,-80.7128,-74.0901,-64.6221,0,-56.1933	1/2:327:0,168,159:0:0:168,159:6023,5570:-944.811,-453.565,-402.992,-491.6,0,-443.736	1/2:124:0,68,56:0:0:68,56:2428,1960:-357.768,-159.815,-139.345,-198.306,0,-181.448	1/2:126:0,53,73:0:0:53,73:1908,2588:-366.879,-211.194,-195.239,-156.043,0,-134.068	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:9:0,9,0:0:0:9,0:315,0:-28.6872,-2.70927,0,-28.6872,-2.70927,-28.6872	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:12:0,11,1:0:0:11,1:396,36:-35.6229,-3.31133,0,-32.6855,-0.0140851,-32.3845	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:254:0,120,134:0:0:120,134:4297,4757:-738.376,-387.951,-351.827,-350.781,0,-310.443	1/1:240:0,240,0:0:0:240,0:8576,0:-771.837,-72.2472,0,-771.837,-72.2472,-771.837	1/2:67:0,29,38:0:0:29,38:1027,1344:-193.477,-109.82,-101.09,-84.0115,0,-72.5723	1/2:9:0,2,7:0:0:2,7:72,250:-26.6149,-20.7395,-20.1374,-6.23466,0,-4.12745	1/2:161:0,93,67:0:0:93,67:3340,2335:-462.346,-189.878,-161.883,-272.461,0,-252.292	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/2:169:0,85,84:0:0:85,84:3020,2937:-485.367,-239.277,-213.689,-246.443,0,-221.156	1/2:71:0,31,40:0:0:31,40:1088,1402:-202.978,-114.434,-105.102,-88.8945,0,-76.8533	1/1:58:0,57,0:0:0:57,0:1996,0:-179.552,-17.1587,0,-179.552,-17.1587,-179.552	1/1:105:0,105,0:0:0:105,0:3768,0:-339.318,-31.6082,0,-339.318,-31.6082,-339.318	1/2:141:0,70,71:0:0:70,71:2488,2535:-409.771,-207.027,-185.955,-203.099,0,-181.726	1/1:204:1,201,2:1:28:201,2:7166,72:-642.143,-58.3149,0,-636.57,-54.579,-638.186	1/1:174:0,173,0:0:0:173,0:6119,0:-550.418,-52.0782,0,-550.418,-52.0782,-550.418	1/2:148:0,71,77:0:0:71,77:2534,2695:-426.198,-219.614,-198.24,-206.938,0,-183.758	1/1:278:0,278,0:0:0:278,0:9923,0:-893.014,-83.6863,0,-893.014,-83.6863,-893.014	1/2:9:0,4,5:0:0:4,5:144,178:-26.6149,-14.8635,-13.6594,-12.1095,0,-10.6043	1/1:151:0,151,0:0:0:151,0:5371,0:-483.523,-45.4555,0,-483.523,-45.4555,-483.523	1/2:31:0,14,17:0:0:14,17:504,598:-90.158,-49.0304,-44.816,-41.4837,0,-36.3662	1/2:17:0,15,2:0:0:15,2:540,72:-50.2959,-6.23466,-1.71921,-44.4211,0,-43.819	1/2:113:0,65,46:0:0:65,46:2319,1616:-320.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chr06	28843058	.	T	A	40977.1	PASS	AB=0.503008;ABP=3.3891;AC=52;AF=0.276596;AN=188;AO=2448;CIGAR=1X;DP=9904;DPB=9904;DPRA=1.06365;EPP=5318.77;EPPR=16189.2;GTI=5;LEN=1;MEANALT=1.01695;MQM=52.8738;MQMR=59.711;NS=94;NUMALT=1;ODDS=0.945365;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87768;QR=266874;RO=7454;RPL=0;RPP=5318.77;RPPR=16189.2;RPR=2448;RUN=1;SAF=2448;SAP=5318.77;SAR=0;SRF=7454;SRP=16189.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:25,17:25:900:17:608:-42.2649,0,-68.6731	0/1:103:44,59:44:1584:59:2124:-159.726,0,-111.843	0/1:152:77,75:77:2756:75:2680:-193.64,0,-202.518	0/0:190:190,0:190:6813:0:0:0,-57.1957,-613.124	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.972	0/0:57:56,1:56:2016:1:36:0,-13.5695,-178.114	0/0:141:141,0:141:5031:0:0:0,-42.4452,-452.698	0/1:156:83,73:83:2959:73:2616:-187.587,0,-219.575	0/1:76:39,37:39:1385:37:1332:-96.623,0,-102.064	0/1:119:64,55:64:2296:55:1970:-141.154,0,-171.073	0/1:59:33,26:33:1184:26:936:-66.6788,0,-89.1075	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.245	0/1:75:35,40:35:1260:40:1426:-104.901,0,-91.0174	0/1:86:50,36:50:1774:36:1292:-90.4069,0,-134.044	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.728	0/1:46:24,22:24:864:22:792:-57.6568,0,-64.2352	0/1:65:41,24:41:1459:24:864:-58.1314,0,-111.979	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.514	0/1:27:12,15:12:432:15:540:-40.6579,0,-31.0934	0/1:213:72,141:72:2584:141:5076:-392.084,0,-168.688	0/1:168:80,88:80:2868:88:3152:-231.807,0,-207.777	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.521	0/1:89:47,42:47:1684:42:1508:-108.933,0,-125.046	0/0:117:112,5:112:4020:5:180:0,-18.6919,-345.344	0/1:89:39,50:39:1396:50:1800:-134.731,0,-99.1427	0/0:310:310,0:310:11095:0:0:0,-93.3193,-998.044	0/1:252:118,134:118:4232:134:4816:-356.672,0,-305.185	0/1:24:10,14:10:360:14:504:-38.4086,0,-25.5196	0/1:306:128,178:128:4592:178:6396:-482.075,0,-321.188	0/1:207:121,86:121:4336:86:3084:-214.207,0,-328.092	0/1:137:77,60:77:2752:60:2148:-151.893,0,-206.558	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6638	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.2973	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:4:3,1:3:108:1:36:-2.18348,0,-8.87105	0/1:8:7,1:7:248:1:36:-1.18099,0,-20.256	0/1:132:75,57:75:2688:57:2040:-143.796,0,-202.427	0/0:180:180,0:180:6451:0:0:0,-54.1854,-580.661	0/1:57:28,29:28:999:29:1040:-75.3833,0,-73.0611	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:229:117,112:117:4188:112:4008:-290.339,0,-308.159	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.012	0/1:161:80,81:80:2860:81:2912:-212.293,0,-208.827	0/1:41:29,12:29:1044:12:419:-25.641,0,-81.9326	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.823	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.158	0/1:164:69,95:69:2460:95:3401:-254.309,0,-172.165	0/0:187:186,1:186:6660:1:36:0,-52.6994,-594.462	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.858	0/1:135:70,65:70:2508:65:2317:-167.649,0,-185.326	0/0:148:148,0:148:5300:0:0:0,-44.5524,-477.117	0/1:9:2,7:2:72:7:252:-20.151,0,-4.12745	0/0:522:520,2:520:18635:2:72:0,-150.318,-1669.85	0/1:86:37,49:37:1324:49:1760:-132.194,0,-93.5559	0/1:15:9,6:9:320:6:212:-14.8646,0,-24.6222	0/1:182:79,103:79:2820:103:3667:-274.46,0,-199.252	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.736	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2956	0/1:122:63,59:63:2249:59:2116:-153.714,0,-165.946	0/0:111:110,0:110:3948:0:0:0,-33.1133,-354.997	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/0:255:255,0:255:9131:0:0:0,-76.7626,-820.135	0/0:160:157,3:157:5610:3:108:0,-38.1039,-494.814	0/1:89:51,38:51:1820:38:1356:-95.1751,0,-137.285	0/1:116:52,64:52:1856:64:2300:-172.03,0,-132.393	0/0:138:136,1:136:4880:1:36:0,-38.0074,-435.753	0/0:128:127,1:127:4535:1:36:0,-34.9387,-404.708	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2701	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.882	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.346	0/1:37:21,16:21:752:16:564:-39.8851,0,-56.8681	0/0:132:132,0:132:4673:0:0:0,-39.736,-420.713	0/1:80:41,39:41:1468:39:1396:-101.338,0,-108.331	0/1:179:98,81:98:3481:81:2896:-206.413,0,-259.61	0/0:284:284,0:284:10200:0:0:0,-85.4925,-917.771	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.617	0/0:105:101,4:101:3615:4:144:0,-18.328,-312.267	0/1:5:2,3:2:72:3:108:-8.54469,0,-5.33157	0/0:120:118,2:118:4229:2:72:0,-29.4283,-373.851	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.034	0/0:189:189,0:189:6759:0:0:0,-56.8947,-608.271	0/1:77:40,37:40:1436:37:1332:-96.751,0,-106.336	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.308	0/1:52:22,30:22:792:30:1080:-81.7214,0,-55.9521	0/1:114:63,51:63:2256:51:1836:-130.037,0,-168.976	0/1:29:17,12:17:612:12:432:-30.3927,0,-46.6836	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.739	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.687	0/1:52:31,21:31:1098:21:756:-52.2251,0,-83.4727	0/1:99:52,47:52:1868:47:1680:-120.816,0,-138.597	0/1:56:19,37:19:675:37:1324:-101.705,0,-44.2193	0/0:215:215,0:215:7700:0:0:0,-64.7214,-692.97	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.88
chr06	28880847	.	A	C	329400	PASS	AB=0.515922;ABP=21.5421;AC=140;AF=0.744681;AN=188;AO=12260;CIGAR=1X;DP=16358;DPB=16358;DPRA=0;EPP=26616.6;EPPR=8864.8;GTI=0;LEN=1;MEANALT=1.09574;MQM=59.7355;MQMR=59.9858;NS=94;NUMALT=1;ODDS=5.00985;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=436628;QR=145975;RO=4089;RPL=6073;RPP=5.31213;RPPR=148.268;RPR=6187;RUN=1;SAF=6074;SAP=5.23207;SAR=6186;SRF=2308;SRP=150.499;SRR=1781;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:28,27:28:1008:27:968:-70.8562,0,-74.4797	0/1:177:93,84:93:3329:84:2926:-210.251,0,-246.544	0/1:188:103,85:103:3669:85:3041:-217.312,0,-273.82	1/1:488:3,485:3:108:485:17233:-1539.82,-136.827,0	1/1:85:0,85:0:0:85:3015:-271.581,-25.5876,0	1/1:70:0,69:0:0:69:2443:-219.751,-20.7711,0	1/1:229:1,228:1:36:228:8147:-729.617,-65.3376,0	0/1:242:132,110:132:4699:110:3920:-280.084,0,-350.221	0/1:218:118,100:118:4216:100:3571:-255.973,0,-313.994	0/1:150:68,82:68:2436:82:2915:-217.411,0,-174.33	0/1:114:43,71:43:1525:71:2539:-194.437,0,-103.224	1/1:213:0,212:0:0:212:7562:-680.201,-63.8184,0	0/1:162:73,89:73:2615:89:3142:-234.236,0,-186.83	0/1:116:61,55:61:2188:55:1949:-140.757,0,-162.266	1/1:154:0,154:0:0:154:5485:-493.756,-46.3586,0	0/1:91:35,56:35:1260:56:1987:-151.705,0,-86.3118	0/1:114:54,60:54:1923:60:2147:-158.871,0,-139.029	1/1:115:0,115:0:0:115:4114:-370.326,-34.6185,0	0/1:58:22,36:22:792:36:1288:-98.6554,0,-54.1459	0/1:328:172,156:172:6149:156:5557:-401.443,0,-454.77	0/1:274:135,139:135:4808:139:4963:-364.216,0,-350.394	1/1:189:1,188:1:36:188:6677:-597.38,-53.2964,0	0/1:181:97,83:97:3467:83:2940:-210.27,0,-257.697	1/1:115:3,112:3:108:112:3995:-349.647,-24.5433,0	0/1:144:63,81:63:2229:81:2862:-214.469,0,-157.525	1/1:385:1,384:1:36:384:13683:-1227.57,-112.298,0	0/1:354:172,182:172:6134:182:6485:-477.122,0,-445.594	0/1:91:45,46:45:1603:46:1648:-121.215,0,-117.166	0/1:791:378,412:378:13478:412:14704:-1084.58,0,-974.611	0/1:170:86,84:86:3096:84:2984:-217.609,0,-227.691	0/1:224:107,117:107:3807:117:4159:-307.054,0,-275.367	1/1:15:0,15:0:0:15:540:-48.9319,-4.51545,0	1/1:53:0,53:0:0:53:1904:-171.637,-15.9546,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:28:0,28:0:0:28:995:-89.864,-8.42884,0	0/1:455:200,254:200:7143:254:9025:-674.998,0,-505.899	1/1:176:0,176:0:0:176:6257:-563.117,-52.9813,0	0/1:146:66,80:66:2372:80:2845:-212.295,0,-169.787	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:279:132,147:132:4712:147:5221:-385.893,0,-340.251	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:260:127,133:127:4537:133:4745:-348.894,0,-330.228	0/1:175:85,90:85:3051:90:3165:-232.375,0,-222.138	1/1:136:0,136:0:0:136:4859:-437.457,-40.9401,0	1/1:154:0,154:0:0:154:5499:-494.968,-46.3586,0	0/1:183:81,102:81:2859:102:3617:-270.63,0,-202.456	1/1:258:0,258:0:0:258:9156:-823.968,-77.6657,0	1/1:111:0,111:0:0:111:3966:-357.09,-33.4143,0	0/1:266:111,155:111:3980:155:5515:-415.75,0,-278.316	1/1:267:0,267:0:0:267:9533:-857.891,-80.375,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:222:0,222:0:0:222:7835:-705.178,-66.8287,0	0/1:75:34,41:34:1212:41:1440:-107.316,0,-86.8091	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/1:258:110,148:110:3914:148:5279:-397.577,0,-274.788	1/1:83:0,83:0:0:83:2950:-265.71,-24.9855,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:33:0,33:0:0:33:1171:-105.697,-9.93399,0	0/1:153:73,79:73:2607:79:2814:-207.378,0,-188.761	1/1:181:0,181:0:0:181:6454:-580.933,-54.4864,0	0/1:11:3,8:3:89:8:288:-22.9436,0,-4.99303	1/1:338:0,338:0:0:338:12104:-1089.14,-101.748,0	1/1:283:1,282:1:36:282:10061:-901.519,-81.5932,0	0/1:126:66,60:66:2364:60:2152:-155.984,0,-175.089	0/1:147:72,75:72:2565:75:2675:-196.744,0,-186.847	1/1:278:0,278:0:0:278:9877:-888.842,-83.6863,0	1/1:199:2,197:2:72:197:7003:-622.994,-53.0682,0	1/1:68:0,68:0:0:68:2422:-218.222,-20.47,0	1/1:126:0,126:0:0:126:4515:-406.459,-37.9298,0	1/1:137:0,137:0:0:137:4874:-438.744,-41.2411,0	0/1:41:20,21:20:716:21:756:-56.025,0,-52.4255	1/1:180:0,180:0:0:180:6437:-579.353,-54.1854,0	0/1:125:54,71:54:1924:71:2535:-190.745,0,-135.808	0/1:362:195,167:195:6926:167:5923:-424.165,0,-514.42	1/1:285:1,284:1:36:284:10114:-906.468,-82.1953,0	1/1:217:2,215:2:68:215:7606:-677.706,-58.8658,0	1/1:245:0,245:0:0:245:8757:-788.071,-73.7524,0	0/1:21:9,12:9:324:12:426:-32.3509,0,-23.1842	1/1:257:0,257:0:0:257:9130:-821.603,-77.3647,0	1/1:219:0,219:0:0:219:7831:-704.642,-65.9256,0	1/1:341:4,337:4:144:337:12059:-1071.78,-89.3376,0	0/1:179:77,102:77:2744:102:3634:-273.36,0,-193.316	1/1:144:0,144:0:0:144:5138:-462.544,-43.3483,0	0/1:133:65,67:65:2336:67:2385:-174.798,0,-170.403	0/1:272:128,144:128:4587:144:5089:-375.748,0,-331.109	0/1:76:47,29:47:1667:29:1031:-70.2243,0,-127.438	1/1:139:0,139:0:0:139:4959:-446.346,-41.8432,0	1/1:167:0,167:0:0:167:5912:-532.151,-50.272,0	0/1:77:40,37:40:1436:37:1316:-95.5579,0,-106.358	0/1:170:68,102:68:2436:102:3662:-277.968,0,-168.316	0/1:151:103,47:103:3683:47:1684:-106.333,0,-286.158	1/1:207:0,206:0:0:206:7345:-660.706,-62.0122,0	1/1:278:2,276:2:72:276:9866:-880.977,-76.8496,0
chr06	28880868	.	G	A	327099	PASS	AB=0.514279;ABP=17.7692;AC=140;AF=0.744681;AN=188;AO=12162;CIGAR=1X;DP=16235;DPB=16235;DPRA=0;EPP=26386.4;EPPR=8838.73;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.7465;MQMR=59.9963;NS=94;NUMALT=1;ODDS=7.06743;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=433496;QR=143935;RO=4069;RPL=5896;RPP=27.4532;RPPR=100.312;RPR=6266;RUN=1;SAF=5897;SAP=27.1897;SAR=6265;SRF=2248;SRP=100.312;SRR=1821;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:28,29:28:987:29:1044:-77.0916,0,-71.9843	0/1:176:94,82:94:3363:82:2902:-208.385,0,-249.905	0/1:190:104,86:104:3645:86:3053:-217.787,0,-271.061	1/1:489:4,485:4:140:485:17296:-1542.73,-134.259,0	1/1:85:0,85:0:0:85:3027:-272.661,-25.5876,0	1/1:69:0,69:0:0:69:2454:-221.089,-20.7711,0	1/1:231:1,230:1:36:230:8214:-735.636,-65.9397,0	0/1:236:128,108:128:4543:108:3862:-276.715,0,-337.995	0/1:213:112,101:112:3949:101:3620:-261.886,0,-291.484	0/1:145:64,81:64:2255:81:2896:-217.202,0,-159.561	0/1:114:44,70:44:1553:70:2502:-191.114,0,-105.742	1/1:215:0,214:0:0:214:7644:-687.405,-64.4204,0	0/1:160:74,86:74:2622:86:3035:-225.206,0,-188.06	0/1:119:62,57:62:2209:57:2052:-149.118,0,-163.251	1/1:152:0,152:0:0:152:5367:-483.146,-45.7566,0	0/1:93:37,56:37:1266:56:1977:-150.203,0,-86.2375	0/1:116:55,61:55:1920:61:2169:-160.241,0,-138.155	1/1:114:0,114:0:0:114:4058:-365.293,-34.3174,0	0/1:57:21,36:21:752:36:1276:-97.8782,0,-50.8475	0/1:331:175,156:175:6196:156:5552:-400.09,0,-458.1	0/1:269:131,138:131:4668:138:4936:-363.368,0,-339.304	1/1:186:1,185:1:36:185:6610:-591.357,-52.3933,0	0/1:180:99,81:99:3528:81:2908:-207.751,0,-263.546	1/1:114:3,111:3:108:111:3960:-346.49,-24.2423,0	0/1:148:68,80:68:2404:80:2859:-212.991,0,-172.063	1/1:388:1,387:1:36:387:13841:-1241.65,-113.201,0	0/1:344:168,176:168:5965:176:6269:-460.707,0,-433.404	0/1:94:47,47:47:1647:47:1652:-120.668,0,-120.217	0/1:767:367,400:367:13006:400:14297:-1055.41,0,-939.444	0/1:168:84,84:84:2963:84:3011:-220.641,0,-216.33	0/1:214:104,110:104:3685:110:3927:-289.196,0,-267.434	1/1:14:0,14:0:0:14:504:-45.6935,-4.21442,0	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:29:0,29:0:0:29:1031:-93.1026,-8.72987,0	0/1:448:198,250:198:7018:250:8871:-663.423,0,-496.824	1/1:176:0,176:0:0:176:6285:-565.703,-52.9813,0	0/1:145:68,77:68:2415:77:2727:-201.973,0,-173.957	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:278:131,147:131:4654:147:5237:-387.706,0,-335.338	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	0/1:265:130,134:130:4560:134:4765:-349.135,0,-330.736	0/1:178:89,89:89:3141:89:3165:-231.485,0,-229.334	1/1:136:0,136:0:0:136:4848:-436.465,-40.9401,0	1/1:152:0,152:0:0:152:5424:-488.263,-45.7566,0	0/1:182:83,99:83:2945:99:3532:-263.285,0,-210.496	1/1:251:0,251:0:0:251:8954:-805.815,-75.5585,0	1/1:115:1,114:1:32:114:4066:-362.794,-31.4191,0	0/1:259:107,152:107:3788:152:5408:-408.752,0,-263.153	1/1:262:0,262:0:0:262:9371:-843.318,-78.8699,0	0/1:13:4,8:4:144:8:284:-21.9672,0,-9.37335	1/1:216:0,216:0:0:216:7685:-691.677,-65.0225,0	0/1:77:35,42:35:1239:42:1499:-111.997,0,-88.6343	0/1:15:9,6:9:315:6:216:-15.2751,0,-24.1718	0/1:255:109,146:109:3860:146:5210:-392.27,0,-270.834	1/1:82:0,82:0:0:82:2940:-264.828,-24.6845,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:151:74,77:74:2618:77:2730:-200.483,0,-190.412	1/1:178:0,178:0:0:178:6341:-570.758,-53.5833,0	0/1:11:3,8:3:108:8:288:-22.9373,0,-6.76384	1/1:338:0,338:0:0:338:12019:-1081.5,-101.748,0	1/1:278:1,277:1:36:277:9861:-883.678,-80.0881,0	0/1:128:65,63:65:2318:63:2232:-162.596,0,-170.347	0/1:147:70,77:70:2469:77:2746:-203.13,0,-178.21	1/1:277:0,277:0:0:277:9874:-888.498,-83.3853,0	1/1:193:2,191:2:72:191:6797:-604.866,-51.2621,0	1/1:68:0,68:0:0:68:2414:-217.503,-20.47,0	1/1:125:0,125:0:0:125:4475:-402.624,-37.6288,0	1/1:136:0,136:0:0:136:4832:-434.88,-40.9401,0	0/1:41:20,20:20:716:20:716:-52.4809,0,-52.4809	1/1:182:0,182:0:0:182:6536:-588.312,-54.7875,0	0/1:121:53,68:53:1868:68:2417:-181.347,0,-131.972	0/1:359:194,165:194:6829:165:5880:-421.212,0,-506.617	1/1:285:2,283:2:68:283:10091:-901.325,-79.3358,0	1/1:213:3,210:3:99:210:7460:-662.123,-54.8828,0	1/1:249:0,249:0:0:249:8884:-799.498,-74.9565,0	0/1:21:9,12:9:320:12:426:-32.3479,0,-22.8207	1/1:251:0,251:0:0:251:8936:-804.158,-75.5585,0	1/1:218:0,218:0:0:218:7734:-695.921,-65.6245,0	1/1:344:4,340:4:140:340:12164:-1081.46,-90.6097,0	0/1:180:79,101:79:2753:101:3588:-268.926,0,-193.827	1/1:144:0,144:0:0:144:5136:-462.364,-43.3483,0	0/1:132:66,66:66:2346:66:2360:-172.91,0,-171.662	0/1:262:128,134:128:4507:134:4768:-349.95,0,-326.93	0/1:77:48,29:48:1695:29:1040:-70.7351,0,-129.656	1/1:144:0,144:0:0:144:5135:-462.176,-43.3483,0	1/1:169:0,169:0:0:169:5989:-539.082,-50.8741,0	0/1:75:38,37:38:1348:37:1320:-96.5234,0,-99.043	0/1:171:66,105:66:2339:105:3747:-285.007,0,-159.293	0/1:147:100,47:100:3549:47:1684:-107.596,0,-275.368	1/1:198:0,198:0:0:198:7049:-634.436,-59.6039,0	1/1:273:1,272:1:36:272:9676:-867.124,-78.5829,0
chr06	28885413	.	GGAGG	AGAGC,GGAGC	115713	PASS	AB=0.468077,0.529696;ABP=26.8562,23.6449;AC=135,51;AF=0.725806,0.274194;AN=186;AO=4066,1439;CIGAR=1X3M1X,4M1X;DP=5514;DPB=6054.2;DPRA=40.3736,0.903096;EPP=8832.22,3127.76;EPPR=0;GTI=2;LEN=5,1;MEANALT=1.68132,2.09091;MQM=58.786,59.3356;MQMR=0;NS=93;NUMALT=2;ODDS=2.92246;PAIRED=0,0;PAIREDR=0;PAO=1356.5,1343.5;PQA=48492,48032;PQR=0;PRO=1;QA=144293,51416;QR=0;RO=0;RPL=4066,1439;RPP=8832.22,3127.76;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8832.22,3127.76;SAR=4066,1439;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:11:0,7,4:0:0:7,4:243,144:-31.2891,-11.7033,-9.59604,-19.5625,0,-18.3584	1/2:33:0,19,14:0:0:19,14:673,489:-93.4815,-38.7664,-33.0469,-53.7572,0,-49.5428	1/2:95:0,50,45:0:0:50,45:1773,1601:-273.11,-129.654,-114.602,-142.693,0,-129.146	1/1:141:0,141,0:0:0:141,0:5001,0:-448.447,-42.4452,0,-448.447,-42.4452,-448.447	1/1:13:0,13,0:0:0:13,0:455,0:-40.9492,-3.91339,0,-40.9492,-3.91339,-40.9492	1/1:15:0,15,0:0:0:15,0:530,0:-47.3201,-4.51545,0,-47.3201,-4.51545,-47.3201	1/1:59:0,58,1:0:0:58,1:2063,36:-185.028,-17.4597,0,-182.091,-15.0443,-181.79	1/2:55:0,20,35:0:0:20,35:713,1252:-157.571,-99.4965,-93.4759,-55.9738,0,-45.4378	1/2:35:0,15,20:0:0:15,20:534,716:-100.393,-56.968,-52.4526,-42.1347,0,-36.1141	1/2:59:0,22,37:0:0:22,37:784,1320:-169.919,-106.033,-99.4102,-62.4804,0,-51.3423	1/2:49:0,23,26:0:0:23,26:816,913:-138.582,-72.2759,-65.3522,-64.3424,0,-56.5157	1/1:71:0,71,0:0:0:71,0:2531,0:-224.479,-21.3731,0,-224.479,-21.3731,-224.479	1/2:51:0,25,26:0:0:25,26:896,906:-142.766,-69.877,-62.3512,-69.5029,0,-61.6762	1/2:41:0,24,17:0:0:24,17:856,612:-117.404,-47.7469,-40.5222,-67.5133,0,-62.3958	1/1:52:0,52,0:0:0:52,0:1852,0:-164.054,-15.6536,0,-164.054,-15.6536,-164.054	1/2:42:0,26,16:0:0:26,16:930,576:-120.801,-45.1016,-37.2749,-73.8366,0,-69.0201	1/2:31:0,20,11:0:0:20,11:703,392:-85.5463,-28.6368,-22.6162,-53.6696,0,-50.3583	1/1:30:0,30,0:0:0:30,0:1059,0:-92.0338,-9.0309,0,-92.0338,-9.0309,-92.0338	1/2:38:0,24,14:0:0:24,14:861,504:-109.038,-39.1259,-31.9012,-67.9632,0,-63.7488	1/2:92:0,38,53:0:0:38,53:1346,1904:-264.067,-154.706,-143.267,-108.771,0,-92.8167	1/2:85:0,42,41:0:0:42,41:1480,1472:-239.457,-119.307,-106.664,-119.411,0,-107.069	1/1:39:0,39,0:0:0:39,0:1377,0:-123.91,-11.7402,0,-123.91,-11.7402,-123.91	1/2:20:0,8,12:0:0:8,12:276,428:-56.6785,-34.2962,-31.8879,-21.8707,0,-18.2584	1/2:21:0,19,2:0:0:19,2:676,72:-60.3398,-5.80858,-0.0890059,-54.4733,0,-53.8712	1/2:46:0,27,19:0:0:27,19:943,680:-131.722,-55.2857,-47.1578,-76.2855,0,-70.566	1/1:130:0,130,0:0:0:130,0:4600,0:-411.061,-39.1339,0,-411.061,-39.1339,-411.061	1/2:205:0,92,112:0:0:92,112:3252,4013:-589.003,-325.402,-297.707,-261.758,0,-228.043	1/2:41:0,15,26:0:0:15,26:540,932:-118.717,-74.6801,-70.1646,-42.7921,0,-34.9654	1/2:204:0,96,107:0:0:96,107:3398,3848:-586.791,-310.111,-281.212,-274.364,0,-242.154	1/2:72:0,34,38:0:0:34,38:1209,1368:-209.294,-110.913,-100.678,-97.7005,0,-86.2613	1/2:36:0,16,20:0:0:16,20:573,705:-102.712,-56.0307,-51.2143,-45.3839,0,-39.3633	1/1:3:0,3,0:0:0:3,0:108,0:-9.88271,-0.90309,0,-9.88271,-0.90309,-9.88271	1/1:8:0,8,0:0:0:8,0:278,0:-25.3392,-2.40824,0,-25.3392,-2.40824,-25.3392	1/1:2:0,2,0:0:0:2,0:72,0:-6.55243,-0.60206,0,-6.55243,-0.60206,-6.55243	2/2:2:0,0,2:0:0:0,2:0,72:-6.82552,-6.82552,-6.82552,-0.60206,-0.60206,0	1/1:9:0,9,0:0:0:9,0:324,0:-29.2996,-2.70927,0,-29.2996,-2.70927,-29.2996	1/2:163:0,69,94:0:0:69,94:2463,3372:-467.067,-266.453,-245.682,-192.115,0,-163.819	1/1:67:0,67,0:0:0:67,0:2398,0:-214.351,-20.169,0,-214.351,-20.169,-214.351	1/2:51:0,22,29:0:0:22,29:781,1036:-146.024,-82.4669,-75.8443,-61.6504,0,-52.9205	.:.:.:.:.:.:.:.	1/2:128:0,48,79:0:0:48,79:1719,2825:-369.152,-229.154,-214.704,-138.842,0,-115.061	1/1:29:0,29,0:0:0:29,0:1040,0:-92.5106,-8.72987,0,-92.5106,-8.72987,-92.5106	1/2:49:0,19,30:0:0:19,30:679,1076:-143.02,-87.6901,-81.9706,-55.2935,0,-46.2626	1/2:47:0,26,21:0:0:26,21:927,737:-131.199,-55.8011,-47.9743,-71.3047,0,-64.983	1/1:40:0,40,0:0:0:40,0:1403,0:-122.881,-12.0412,0,-122.881,-12.0412,-122.881	1/1:43:0,42,1:0:0:42,1:1490,36:-133.53,-12.6433,0,-130.593,-10.1873,-130.292	1/2:66:0,25,41:0:0:25,41:866,1468:-189.648,-119.364,-111.838,-70.0044,0,-57.6622	1/1:148:0,143,4:0:0:143,4:5053,144:-453.299,-43.0473,0,-441.555,-31.7936,-440.351	1/1:65:0,65,0:0:0:65,0:2333,0:-209.136,-19.567,0,-209.136,-19.567,-209.136	1/2:56:0,23,33:0:0:23,33:823,1184:-161.871,-95.0669,-88.1432,-65.3434,0,-55.4094	1/1:85:0,85,0:0:0:85,0:3001,0:-270.127,-25.5876,0,-270.127,-25.5876,-270.127	1/2:7:0,6,1:0:0:6,1:216,36:-20.8702,-3.29724,-1.49106,-17.9342,0,-17.6331	1/1:128:0,127,0:0:0:127,0:4529,0:-406.083,-38.2308,0,-406.083,-38.2308,-406.083	1/2:43:0,20,23:0:0:20,23:698,813:-123.127,-66.3783,-60.3577,-56.9312,0,-50.0075	1/2:5:0,2,3:0:0:2,3:62,108:-14.1161,-9.16107,-8.55901,-5.28467,0,-4.38158	1/2:97:0,45,52:0:0:45,52:1586,1864:-279.775,-150.78,-137.234,-128.125,0,-112.472	1/1:4:0,4,0:0:0:4,0:133,0:-11.7427,-1.20412,0,-11.7427,-1.20412,-11.7427	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.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chr06	29000130	.	A	T	84096.1	PASS	AB=0.46117;ABP=41.2908;AC=139;AF=0.747312;AN=186;AO=4055;CIGAR=1X;DP=5645;DPB=5645;DPRA=0;EPP=8808.33;EPPR=3446.97;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9714;MQMR=60;NS=93;NUMALT=1;ODDS=0.571189;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144797;QR=56824;RO=1586;RPL=4055;RPP=8808.33;RPPR=3446.97;RPR=0;RUN=1;SAF=0;SAP=8808.33;SAR=4055;SRF=0;SRP=3446.97;SRR=1586;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:4,15:4:140:15:540:-43.217,0,-7.22501	0/1:56:36,20:36:1292:20:696:-46.1047,0,-99.7261	0/1:81:51,30:51:1832:30:1076:-72.7694,0,-140.777	1/1:143:1,142:1:36:142:5085:-454.193,-39.449,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:59:0,59:0:0:59:2111:-190.259,-17.7608,0	0/1:68:35,33:35:1260:33:1186:-86.5785,0,-93.2354	0/1:54:31,23:31:1112:23:824:-58.2277,0,-84.1357	0/1:47:25,22:25:876:22:788:-57.0964,0,-65.0086	0/1:44:23,21:23:824:21:741:-53.7663,0,-61.238	1/1:82:0,82:0:0:82:2952:-265.913,-24.6845,0	0/1:72:33,39:33:1188:39:1377:-102.553,0,-85.5544	0/1:61:32,29:32:1140:29:1040:-75.5515,0,-84.5464	1/1:76:0,76:0:0:76:2717:-244.772,-22.8783,0	0/1:57:34,23:34:1212:23:824:-57.3246,0,-92.2276	0/1:28:17,11:17:612:11:381:-26.1918,0,-46.9846	1/1:30:0,29:0:0:29:1044:-93.915,-8.72987,0	0/1:45:30,15:30:1080:15:540:-35.3902,0,-83.9669	0/1:92:55,37:55:1964:37:1332:-92.4876,0,-149.341	0/1:106:51,55:51:1828:55:1961:-144.854,0,-132.892	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:67:30,37:30:1076:37:1320:-98.9329,0,-76.9838	1/1:36:2,34:2:68:34:1224:-104.009,-4.37937,0	0/1:22:15,7:15:540:7:248:-16.0415,0,-42.3139	1/1:125:0,125:0:0:125:4438:-399.591,-37.6288,0	0/1:148:69,79:69:2468:79:2821:-209.575,0,-177.822	0/1:37:18,19:18:648:19:680:-50.3911,0,-47.5138	0/1:109:58,51:58:2080:51:1820:-131.269,0,-154.658	0/1:51:36,15:36:1284:15:517:-31.5021,0,-100.511	0/1:81:41,40:41:1460:40:1434:-104.974,0,-107.313	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:19:8,10:8:288:10:356:-26.6032,0,-20.489	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:169:83,86:83:2976:86:3084:-226.914,0,-217.198	1/1:42:0,42:0:0:42:1489:-134.303,-12.6433,0	0/1:47:21,26:21:752:26:913:-68.3356,0,-53.8578	.:.:.:.:.:.:.:.	0/1:110:58,52:58:2076:52:1830:-131.864,0,-153.997	1/1:30:0,30:0:0:30:1065:-96.1598,-9.0309,0	0/1:68:30,38:30:1080:38:1364:-102.591,0,-77.0432	0/1:62:32,30:32:1144:30:1080:-78.8494,0,-84.6057	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:65:38,27:38:1368:27:960:-67.1493,0,-103.854	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:76:46,30:46:1644:30:1053:-72.2003,0,-125.37	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:54:37,17:37:1328:17:612:-39.1578,0,-103.567	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:119:64,55:64:2280:55:1976:-142.292,0,-169.64	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:45:27,18:27:972:18:629:-43.3874,0,-74.2516	1/1:84:1,83:1:36:83:2961:-263.123,-21.6882,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:146:0,146:0:0:146:5201:-468.23,-43.9504,0	1/1:99:0,99:0:0:99:3517:-316.551,-29.802,0	0/1:57:27,30:27:972:30:1031:-75.9337,0,-70.6392	0/1:45:22,23:22:784:23:828:-61.2978,0,-57.3376	1/1:84:4,80:4:144:80:2834:-240.879,-11.9729,0	1/1:93:3,90:3:108:90:3213:-278.379,-17.9206,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:43:0,42:0:0:42:1496:-134.575,-12.6433,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:32:21,11:21:756:11:396:-26.3498,0,-58.7343	0/1:78:44,34:44:1580:34:1224:-86.9867,0,-119.011	1/1:133:0,133:0:0:133:4749:-427.568,-40.037,0	1/1:44:0,44:0:0:44:1564:-141.052,-13.2453,0	1/1:123:0,123:0:0:123:4384:-394.731,-37.0267,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:60:0,60:0:0:60:2158:-194.487,-18.0618,0	1/1:75:0,75:0:0:75:2684:-241.804,-22.5773,0	1/1:108:1,107:1:36:107:3814:-339.857,-28.913,0	0/1:82:44,38:44:1584:38:1364:-98.29,0,-118.167	1/1:63:0,62:0:0:62:2232:-200.784,-18.6639,0	0/1:60:39,21:39:1396:21:756:-50.3054,0,-107.877	0/1:143:74,69:74:2652:69:2484:-180.765,0,-195.879	0/1:24:10,14:10:356:14:474:-35.755,0,-25.1565	1/1:59:0,59:0:0:59:2109:-190.077,-17.7608,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	0/1:36:15,21:15:540:21:756:-57.5301,0,-38.0995	0/1:86:50,36:50:1800:36:1292:-90.6952,0,-136.394	0/1:64:41,23:41:1468:23:828:-55.5782,0,-113.15	1/1:133:0,133:0:0:133:4742:-426.937,-40.037,0	1/1:101:0,101:0:0:101:3622:-326.184,-30.404,0
chr06	29000259	.	G	A	119957	PASS	AB=0.539051;ABP=49.6498;AC=135;AF=0.725806;AN=186;AO=5527;CIGAR=1X;DP=7167;DPB=7167;DPRA=78.7363;EPP=11404.4;EPPR=3495.08;GTI=3;LEN=1;MEANALT=1;MQM=59.9383;MQMR=59.9854;NS=93;NUMALT=1;ODDS=0.519829;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197972;QR=58364;RO=1640;RPL=5457;RPP=11404.4;RPPR=3495.08;RPR=70;RUN=1;SAF=0;SAP=12004.7;SAR=5527;SRF=0;SRP=3564.23;SRR=1640;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:20,29:20:702:29:1031:-78.3521,0,-48.7498	0/1:74:34,40:34:1207:40:1429:-106.63,0,-86.6591	0/1:134:72,62:72:2559:62:2228:-160.446,0,-190.222	1/1:137:0,137:0:0:137:4900:-441.149,-41.2411,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	0/1:86:32,54:32:1148:54:1916:-146.825,0,-77.7413	0/1:36:14,22:14:500:22:788:-60.4077,0,-34.4991	0/1:57:17,40:17:612:40:1428:-111.659,0,-38.2547	0/1:68:37,31:37:1293:31:1108:-79.561,0,-96.1987	1/1:147:0,147:0:0:147:5270:-474.416,-44.2514,0	0/1:100:48,52:48:1704:52:1848:-136.48,0,-123.543	0/1:69:28,41:28:1008:41:1461:-111.013,0,-70.2653	1/1:90:1,89:1:32:89:3192:-284.304,-23.8934,0	0/1:124:59,65:59:2083:65:2340:-173.53,0,-150.41	0/1:41:20,21:20:702:21:737:-54.3065,0,-51.1603	1/1:42:0,42:0:0:42:1512:-136.37,-12.6433,0	0/1:36:19,17:19:671:17:612:-44.5587,0,-49.8787	0/1:146:71,75:71:2509:75:2688:-198.211,0,-182.111	0/1:89:28,61:28:1008:61:2196:-171.113,0,-64.2447	1/1:116:0,116:0:0:116:4168:-375.301,-34.9195,0	0/1:76:27,49:27:968:49:1764:-136.165,0,-64.5591	1/1:88:7,81:7:248:81:2912:-239.65,-3.82645,0	0/1:65:34,31:34:1216:31:1116:-81.1847,0,-90.1796	1/1:153:2,151:2:68:151:5404:-480.03,-39.5999,0	0/1:147:55,92:55:1959:92:3291:-252.157,0,-132.333	0/1:41:20,21:20:705:21:747:-55.2121,0,-51.4306	0/1:103:42,61:42:1483:61:2192:-166.539,0,-102.758	0/1:88:35,53:35:1242:53:1891:-143.977,0,-85.5924	0/1:57:29,28:29:1036:28:1000:-73.1567,0,-76.3952	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:249:127,122:127:4520:122:4392:-320.494,0,-332.011	1/1:90:0,90:0:0:90:3236:-291.461,-27.0927,0	0/1:73:40,33:40:1423:33:1173:-83.9004,0,-106.392	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:57:28,29:28:1000:29:1035:-76.3044,0,-73.1567	1/1:49:1,48:1:36:48:1728:-152.207,-11.1522,0	0/1:154:67,87:67:2412:87:3115:-234.216,0,-170.977	0/1:82:37,45:37:1319:45:1601:-119.694,0,-94.3267	1/1:76:0,76:0:0:76:2719:-244.953,-22.8783,0	1/1:104:0,104:0:0:104:3740:-336.692,-31.3071,0	0/1:64:36,28:36:1288:28:1004:-71.4099,0,-96.9577	1/1:111:0,111:0:0:111:3976:-358.029,-33.4143,0	1/1:74:0,74:0:0:74:2653:-239.006,-22.2762,0	0/1:93:42,51:42:1508:51:1836:-137.525,0,-108.019	1/1:157:0,157:0:0:157:5632:-506.912,-47.2617,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0	0/1:28:14,14:14:496:14:498:-36.7261,0,-36.5454	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:78:40,38:40:1428:38:1368:-99.9405,0,-105.337	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:52:21,31:21:752:31:1112:-84.7378,0,-52.3527	1/1:128:1,127:1:36:127:4541:-405.184,-34.9336,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:85:0,85:0:0:85:3048:-273.264,-25.5876,0	1/1:108:0,108:0:0:108:3880:-349.393,-32.5112,0	0/1:59:23,36:23:819:36:1280:-97.7425,0,-56.2708	0/1:51:19,32:19:676:32:1152:-88.6376,0,-45.8155	1/1:111:0,111:0:0:111:3975:-357.939,-33.4143,0	1/1:125:1,124:1:36:124:4447:-396.795,-34.0305,0	1/1:46:0,46:0:0:46:1643:-148.153,-13.8474,0	1/1:93:1,92:1:36:92:3270:-290.922,-24.3975,0	1/1:45:0,45:0:0:45:1616:-145.729,-13.5464,0	0/1:19:6,13:6:208:13:468:-36.7401,0,-13.3395	1/1:135:0,135:0:0:135:4815:-433.504,-40.6391,0	0/1:71:30,41:30:1037:41:1468:-111.038,0,-72.2636	0/1:93:38,55:38:1351:55:1972:-149.758,0,-93.8938	1/1:108:0,108:0:0:108:3880:-349.203,-32.5112,0	1/1:80:0,80:0:0:80:2865:-258.087,-24.0824,0	1/1:39:1,38:1:36:38:1327:-116.119,-8.1419,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:68:0,68:0:0:68:2435:-219.315,-20.47,0	1/1:137:0,137:0:0:137:4899:-441.062,-41.2411,0	0/1:64:29,35:29:1044:35:1239:-92.5462,0,-75.0089	1/1:100:0,100:0:0:100:3587:-323.025,-30.103,0	0/1:50:26,24:26:932:24:864:-63.0311,0,-69.1474	0/1:159:84,75:84:3003:75:2681:-193.67,0,-222.609	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	1/1:99:0,99:0:0:99:3543:-319.078,-29.802,0	1/1:159:0,159:0:0:159:5707:-513.744,-47.8638,0	0/1:55:31,24:31:1088:24:860:-61.1652,0,-81.6698	0/1:126:57,69:57:2036:69:2475:-185.073,0,-145.582	0/1:112:70,42:70:2497:42:1512:-102.659,0,-191.266	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:129:0,129:0:0:129:4630:-416.861,-38.8329,0
chr06	29000361	.	A	G	121667	PASS	AB=0.472664;ABP=36.8445;AC=136;AF=0.723404;AN=188;AO=5956;CIGAR=1X;DP=8729;DPB=8729;DPRA=0;EPP=12539.8;EPPR=5738.91;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.6044;MQMR=59.9588;NS=94;NUMALT=1;ODDS=0.232489;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211224;QR=99106;RO=2768;RPL=5910;RPP=12539.8;RPPR=5755.89;RPR=46;RUN=1;SAF=0;SAP=12936.3;SAR=5956;SRF=2;SRP=5996.29;SRR=2766;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:22,39:22:788:39:1387:-106.765,0,-52.882	0/1:89:47,42:47:1668:42:1493:-107.817,0,-123.613	0/1:229:114,115:114:4079:115:4056:-295.711,0,-298.36	1/1:176:1,175:1:36:175:6226:-556.798,-49.383,0	0/1:7:1,6:1:36:6:207:-16.8588,0,-1.49106	1/1:29:0,29:0:0:29:1027:-92.734,-8.72987,0	1/1:69:0,69:0:0:69:2455:-221.205,-20.7711,0	0/1:150:94,56:94:3363:56:1983:-133.518,0,-256.795	0/1:144:89,55:89:3183:55:1945:-131.939,0,-243.345	0/1:109:56,53:56:2008:53:1891:-137.647,0,-148.181	0/1:76:45,31:45:1608:31:1103:-76.6992,0,-122.132	1/1:120:0,119:0:0:119:4239:-381.043,-35.8226,0	0/1:116:61,55:61:2192:55:1956:-141.372,0,-162.626	0/1:95:46,49:46:1652:49:1743:-128.537,0,-120.371	1/1:94:0,94:0:0:94:3341:-300.901,-28.2968,0	0/1:67:37,30:37:1332:30:1054:-74.991,0,-100.013	0/1:48:28,20:28:999:20:694:-48.3309,0,-75.7751	1/1:45:0,45:0:0:45:1563:-140.939,-13.5464,0	0/1:47:25,22:25:900:22:771:-55.5619,0,-67.1726	0/1:102:52,50:52:1868:50:1774:-129.217,0,-137.694	0/1:227:135,92:135:4819:92:3241:-223.554,0,-365.532	1/1:46:0,46:0:0:46:1623:-146.014,-13.8474,0	0/1:161:79,82:79:2828:82:2893:-212.129,0,-206.293	0/1:60:8,52:8:288:52:1860:-149.599,0,-8.20561	0/1:64:37,27:37:1328:27:951:-66.6338,0,-100.556	1/1:184:0,184:0:0:184:6527:-587.45,-55.3895,0	0/1:335:150,185:150:5371:185:6570:-490.515,0,-382.676	0/1:43:20,23:20:720:23:815:-60.7219,0,-51.4043	0/1:204:134,70:134:4808:70:2487:-162.67,0,-371.464	0/1:101:43,58:43:1540:58:2059:-155.161,0,-108.299	0/1:147:65,82:65:2319:82:2864:-213.705,0,-164.718	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	1/1:26:0,26:0:0:26:906:-81.8521,-7.82678,0	0/1:179:94,85:94:3367:85:3040:-219.943,0,-249.361	1/1:58:0,58:0:0:58:2067:-186.257,-17.4597,0	0/1:72:33,39:33:1184:39:1384:-103.123,0,-85.1942	0/1:8:7,1:7:243:1:36:-1.19004,0,-19.7992	0/1:113:71,42:71:2547:42:1491:-100.454,0,-195.463	1/1:61:0,61:0:0:61:2154:-194.099,-18.3628,0	0/1:137:67,70:67:2400:70:2461:-180.494,0,-175.016	0/1:83:44,39:44:1584:39:1395:-100.858,0,-117.866	1/1:85:0,85:0:0:85:3019:-271.524,-25.5876,0	1/1:80:0,80:0:0:80:2823:-254.306,-24.0824,0	0/1:106:63,43:63:2255:43:1528:-105.888,0,-171.303	1/1:135:0,135:0:0:135:4790:-431.161,-40.6391,0	1/1:70:0,70:0:0:70:2465:-222.089,-21.0721,0	0/1:139:82,57:82:2948:57:1987:-137.254,0,-223.71	1/1:66:0,66:0:0:66:2356:-212.274,-19.868,0	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	1/1:124:0,124:0:0:124:4391:-395.307,-37.3277,0	0/1:96:70,26:70:2508:26:928:-54.9394,0,-197.073	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:188:99,89:99:3534:89:3164:-228.236,0,-261.675	1/1:35:0,35:0:0:35:1223:-110.372,-10.5361,0	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	1/1:8:0,8:0:0:8:284:-25.8978,-2.40824,0	0/1:124:52,72:52:1859:72:2544:-191.863,0,-130.257	1/1:96:0,96:0:0:96:3406:-306.746,-28.8989,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:98:0,97:0:0:97:3432:-308.728,-29.1999,0	1/1:171:7,163:7:252:163:5804:-499.431,-28.506,0	0/1:68:35,33:35:1242:33:1180:-86.0357,0,-91.613	0/1:97:55,42:55:1972:42:1484:-104.641,0,-148.555	1/1:134:1,133:1:36:133:4727:-421.987,-36.7397,0	1/1:128:2,126:2:72:126:4495:-397.341,-31.6951,0	1/1:70:1,69:1:36:69:2435:-215.469,-17.4738,0	1/1:33:0,33:0:0:33:1168:-105.404,-9.93399,0	1/1:62:0,62:0:0:62:2184:-196.81,-18.6639,0	0/1:33:19,14:19:680:14:504:-35.7641,0,-51.5952	1/1:81:0,81:0:0:81:2869:-258.421,-24.3834,0	0/1:108:61,47:61:2196:47:1663:-117.445,0,-165.394	0/1:261:121,140:121:4313:140:4978:-369.582,0,-309.758	1/1:130:0,130:0:0:130:4613:-415.272,-39.1339,0	1/1:51:0,51:0:0:51:1823:-163.972,-15.3525,0	1/1:92:0,92:0:0:92:3257:-293.348,-27.6948,0	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	1/1:109:1,108:1:36:108:3856:-343.412,-29.214,0	1/1:87:0,87:0:0:87:3071:-275.947,-26.1896,0	1/1:184:7,177:7:252:177:6285:-542.702,-32.3606,0	0/1:74:39,35:39:1400:35:1239:-89.5257,0,-104.023	1/1:95:0,94:0:0:94:3372:-303.317,-28.2968,0	0/1:47:24,23:24:860:23:811:-59.1569,0,-63.5734	0/1:142:75,67:75:2666:67:2396:-173.013,0,-197.439	0/1:33:16,17:16:576:17:608:-45.118,0,-42.241	1/1:69:0,69:0:0:69:2440:-219.455,-20.7711,0	1/1:84:0,84:0:0:84:2989:-269.16,-25.2865,0	0/1:97:43,54:43:1544:54:1906:-142.594,0,-110.053	0/1:142:71,70:71:2552:70:2450:-177.873,0,-187.164	0/1:110:72,38:72:2571:38:1353:-88.9519,0,-198.526	1/1:89:0,89:0:0:89:3142:-282.99,-26.7917,0	1/1:110:0,110:0:0:110:3930:-353.88,-33.1133,0
chr06	29000382	.	G	A	123059	PASS	AB=0.473293;ABP=35.4871;AC=137;AF=0.728723;AN=188;AO=6027;CIGAR=1X;DP=8807;DPB=8807;DPRA=0;EPP=13055.8;EPPR=6031.02;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.5811;MQMR=59.9463;NS=94;NUMALT=1;ODDS=0.0629205;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215712;QR=99235;RO=2776;RPL=6023;RPP=13055.8;RPPR=6031.02;RPR=4;RUN=1;SAF=0;SAP=13090.5;SAR=6027;SRF=0;SRP=6031.02;SRR=2776;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:20,37:20:720:37:1324:-102.303,0,-47.9701	0/1:87:46,41:46:1621:41:1468:-106.163,0,-119.987	0/1:229:116,113:116:4129:113:4045:-294.711,0,-302.859	1/1:179:1,178:1:36:178:6350:-567.838,-50.2861,0	1/1:6:0,6:0:0:6:216:-19.7896,-1.80618,0	1/1:28:0,28:0:0:28:989:-89.3218,-8.42884,0	1/1:72:0,72:0:0:72:2580:-232.447,-21.6742,0	0/1:153:97,56:97:3446:56:2008:-134.875,0,-263.666	0/1:147:91,56:91:3268:56:1997:-135.736,0,-250.085	0/1:111:58,53:58:2076:53:1904:-138.215,0,-153.696	0/1:77:44,33:44:1561:33:1169:-82.3336,0,-117.6	1/1:121:0,121:0:0:121:4332:-389.948,-36.4246,0	0/1:117:61,56:61:2179:56:2016:-146.468,0,-161.155	0/1:93:46,47:46:1648:47:1684:-123.832,0,-120.526	1/1:95:0,94:0:0:94:3376:-303.686,-28.2968,0	0/1:66:36,30:36:1280:30:1080:-77.6361,0,-95.6353	0/1:49:29,20:29:1044:20:716:-50.0172,0,-79.5243	1/1:44:0,44:0:0:44:1580:-142.472,-13.2453,0	0/1:46:24,22:24:864:22:784:-57.0365,0,-64.2352	0/1:106:53,53:53:1900:53:1884:-137.911,0,-139.369	0/1:228:134,94:134:4792:94:3376:-235.389,0,-362.802	1/1:45:0,45:0:0:45:1608:-144.667,-13.5464,0	0/1:165:81,84:81:2873:84:2994:-219.982,0,-209.137	0/1:61:8,53:8:288:53:1892:-152.18,0,-7.90458	0/1:62:36,26:36:1292:26:932:-65.5304,0,-97.9199	1/1:186:0,186:0:0:186:6653:-598.785,-55.9916,0	0/1:336:150,186:150:5384:186:6652:-497.096,0,-383.544	0/1:42:21,21:21:756:21:752:-55.3584,0,-54.944	0/1:206:134,72:134:4800:72:2580:-170.432,0,-370.143	0/1:102:42,60:42:1500:60:2129:-161.161,0,-104.399	0/1:144:63,81:63:2260:81:2895:-217.387,0,-160.314	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:14:8,6:8:288:6:208:-14.8447,0,-22.053	1/1:26:0,26:0:0:26:928:-83.8276,-7.82678,0	0/1:188:95,93:95:3405:93:3332:-243.481,0,-250.069	1/1:58:0,58:0:0:58:2084:-187.803,-17.4597,0	0/1:74:34,40:34:1200:40:1436:-107.2,0,-86.0266	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/1:115:72,43:72:2584:43:1544:-104.621,0,-198.19	1/1:61:0,61:0:0:61:2188:-197.158,-18.3628,0	0/1:143:70,73:70:2512:73:2605:-191.613,0,-183.285	0/1:83:44,39:44:1580:39:1396:-100.949,0,-117.506	1/1:85:0,85:0:0:85:3013:-270.339,-25.5876,0	1/1:79:0,79:0:0:79:2821:-254.126,-23.7814,0	0/1:107:63,44:63:2248:44:1580:-110.265,0,-170.373	1/1:137:0,137:0:0:137:4892:-440.332,-41.2411,0	1/1:68:0,68:0:0:68:2444:-220.179,-20.47,0	0/1:136:80,56:80:2845:56:2004:-139.686,0,-215.347	1/1:71:0,71:0:0:71:2532:-227.987,-21.3731,0	0/1:14:8,6:8:280:6:216:-15.5761,0,-21.3249	1/1:130:0,130:0:0:130:4660:-419.461,-39.1339,0	0/1:97:71,26:71:2536:26:936:-55.3596,0,-199.292	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:188:99,88:99:3548:88:3156:-227.455,0,-262.876	1/1:34:0,34:0:0:34:1224:-110.465,-10.235,0	0/1:13:11,2:11:392:2:72:-2.92333,0,-31.7067	1/1:8:0,8:0:0:8:288:-26.2618,-2.40824,0	0/1:122:49,73:49:1752:73:2616:-198.899,0,-121.234	1/1:100:0,100:0:0:100:3592:-323.474,-30.103,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:104:0,104:0:0:104:3692:-332.108,-31.3071,0	1/1:172:6,166:6:201:166:5924:-514.825,-33.3601,0	0/1:68:36,32:36:1280:32:1152:-83.5178,0,-95.0332	0/1:99:58,41:58:2068:41:1476:-102.695,0,-156.587	1/1:133:0,133:0:0:133:4763:-428.818,-40.037,0	1/1:124:1,123:1:36:123:4416:-393.471,-33.7294,0	1/1:72:0,72:0:0:72:2592:-232.559,-21.6742,0	1/1:33:0,33:0:0:33:1188:-107.195,-9.93399,0	1/1:62:0,62:0:0:62:2228:-200.721,-18.6639,0	0/1:35:19,16:19:680:16:572:-41.2774,0,-50.9931	1/1:80:0,80:0:0:80:2860:-257.44,-24.0824,0	0/1:106:59,47:59:2116:47:1684:-119.938,0,-158.8	0/1:265:124,141:124:4416:141:5036:-373.466,0,-317.712	1/1:132:0,132:0:0:132:4713:-424.32,-39.736,0	1/1:51:0,51:0:0:51:1828:-164.422,-15.3525,0	1/1:94:0,94:0:0:94:3368:-303.323,-28.2968,0	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	1/1:111:0,111:0:0:111:3976:-357.804,-33.4143,0	1/1:86:0,86:0:0:86:3082:-277.112,-25.8886,0	1/1:186:7,177:7:248:177:6326:-546.753,-33.0255,0	0/1:74:39,35:39:1400:35:1252:-90.6948,0,-104.023	1/1:99:1,98:1:36:98:3508:-312.235,-26.2063,0	0/1:48:25,23:25:891:23:828:-60.39,0,-66.0593	0/1:142:73,69:73:2620:69:2480:-180.43,0,-193.301	0/1:33:16,17:16:576:17:608:-45.118,0,-42.241	1/1:71:0,71:0:0:71:2548:-228.547,-21.3731,0	1/1:85:0,85:0:0:85:3055:-274.837,-25.5876,0	0/1:97:43,54:43:1548:54:1940:-145.654,0,-110.413	0/1:146:75,71:75:2692:71:2529:-183.399,0,-198.574	0/1:110:72,38:72:2576:38:1352:-88.8624,0,-198.976	1/1:90:0,90:0:0:90:3224:-290.367,-27.0927,0	1/1:115:0,115:0:0:115:4124:-371.332,-34.6185,0
chr06	29281904	.	C	T	93472.4	PASS	AB=0.440744;ABP=127.565;AC=138;AF=0.741935;AN=186;AO=6599;CIGAR=1X;DP=8905;DPB=8905;DPRA=96.7826;EPP=14332.6;EPPR=5006.08;GTI=1;LEN=1;MEANALT=1.02174;MQM=28.8566;MQMR=59.6723;NS=93;NUMALT=1;ODDS=1.94208;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236539;QR=82124;RO=2304;RPL=0;RPP=14332.6;RPPR=5006.08;RPR=6599;RUN=1;SAF=0;SAP=14332.6;SAR=6599;SRF=0;SRP=5006.08;SRR=2304;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:280:6:216:-11.3015,0,-21.3249	0/1:121:66,55:66:2376:55:1959:-103.165,0,-177.667	0/1:139:85,54:85:3052:54:1936:-95.1313,0,-233.055	1/1:197:0,197:0:0:197:7076:-495.88,-59.3029,0	1/1:69:1,67:1:36:67:2412:-167.89,-17.1927,0	1/1:15:0,15:0:0:15:540:-38.3243,-4.51545,0	1/1:171:0,171:0:0:171:6108:-431.015,-51.4761,0	0/1:96:59,37:59:2112:37:1324:-65.3353,0,-161.273	0/1:91:38,53:38:1348:53:1904:-108.248,0,-94.2099	0/1:78:40,38:40:1419:38:1360:-73.107,0,-104.501	0/1:64:40,24:40:1440:24:864:-40.8738,0,-110.398	1/1:72:0,72:0:0:72:2575:-180.155,-21.6742,0	0/1:81:43,38:43:1531:38:1364:-72.5927,0,-113.687	0/1:86:41,45:41:1446:45:1612:-88.235,0,-104.527	0/1:57:38,19:38:1360:19:684:-31.3639,0,-105.296	1/1:61:0,61:0:0:61:2172:-153.169,-18.3628,0	1/1:70:0,70:0:0:70:2512:-178.23,-21.0721,0	1/1:67:0,67:0:0:67:2408:-168.58,-20.169,0	0/1:42:21,21:21:744:21:752:-41.785,0,-54.6377	0/1:213:110,103:110:3940:103:3708:-196.978,0,-290.629	0/1:151:87,64:87:3064:64:2300:-116.997,0,-230.528	1/1:140:0,140:0:0:140:5005:-351.909,-42.1442,0	0/1:77:47,30:47:1680:30:1076:-52.2328,0,-128.308	1/1:109:4,105:4:144:105:3776:-251.119,-19.4987,0	0/1:106:59,47:59:2107:47:1692:-88.0926,0,-157.98	1/1:268:0,268:0:0:268:9588:-674.621,-80.676,0	0/1:117:53,64:53:1900:64:2296:-127.236,0,-136.051	0/1:35:17,18:17:603:18:644:-34.8684,0,-44.0458	0/1:270:155,115:155:5494:115:4132:-207.646,0,-412.993	0/1:122:77,45:77:2748:45:1616:-75.2887,0,-210.807	0/1:112:66,46:66:2359:46:1652:-82.1126,0,-178.846	1/1:5:0,5:0:0:5:172:-12.7979,-1.50515,0	1/1:27:0,27:0:0:27:964:-68.2263,-8.12781,0	1/1:3:0,3:0:0:3:108:-7.89903,-0.90309,0	1/1:3:0,3:0:0:3:108:-7.89903,-0.90309,0	.:.:.:.:.:.:.:.	0/1:208:108,100:108:3851:100:3592:-191.163,0,-284.147	1/1:189:0,188:0:0:188:6764:-476.296,-56.5936,0	0/1:68:44,24:44:1537:24:864:-42.0438,0,-118.131	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:159:110,49:110:3914:49:1764:-76.2218,0,-304.56	1/1:37:0,37:0:0:37:1332:-93.2452,-11.1381,0	0/1:140:93,47:93:3328:47:1688:-77.7125,0,-257.577	0/1:69:45,24:45:1603:24:856:-39.6936,0,-123.776	1/1:63:0,63:0:0:63:2264:-159.042,-18.9649,0	1/1:78:0,78:0:0:78:2808:-196.619,-23.4803,0	0/1:120:66,54:66:2372:54:1936:-102.063,0,-177.602	1/1:167:1,166:1:36:166:5945:-413.062,-46.6737,0	1/1:110:0,110:0:0:110:3948:-279.079,-33.1133,0	0/1:129:74,55:74:2643:55:1972:-100.83,0,-199.269	1/1:210:0,210:0:0:210:7528:-530.64,-63.2163,0	0/1:7:3,4:3:108:4:144:-8.33079,0,-7.96156	1/1:179:0,179:0:0:179:6393:-451.286,-53.8844,0	0/1:40:25,15:25:896:15:536:-26.2373,0,-68.9192	0/1:8:4,4:4:144:4:144:-8.02976,0,-10.9054	0/1:150:74,76:74:2635:76:2728:-147.572,0,-192.234	1/1:83:0,83:0:0:83:2980:-205.367,-24.9855,0	0/1:4:2,2:2:72:2:72:-4.15593,0,-5.62609	1/1:29:0,29:0:0:29:1044:-72.9326,-8.72987,0	0/1:64:44,20:44:1559:20:707:-31.4257,0,-121.259	1/1:145:1,144:1:32:144:5165:-358.403,-40.45,0	0/1:2:1,1:1:36:1:36:-2.21902,0,-2.99621	1/1:154:0,154:0:0:154:5523:-386.767,-46.3586,0	1/1:166:2,164:2:72:164:5888:-408.587,-43.1343,0	0/1:64:30,34:30:1076:34:1220:-66.8215,0,-77.8684	0/1:107:63,44:63:2232:44:1580:-78.7994,0,-168.916	1/1:128:4,124:4:135:124:4448:-299.65,-26.0501,0	1/1:106:0,106:0:0:106:3793:-266.175,-31.9092,0	1/1:35:1,34:1:36:34:1220:-83.3526,-6.93778,0	1/1:88:0,88:0:0:88:3124:-222.009,-26.4906,0	1/1:83:0,83:0:0:83:2984:-206.179,-24.9855,0	0/1:8:3,5:3:108:5:180:-10.5687,0,-7.66693	1/1:148:0,148:0:0:148:5286:-372.279,-44.5524,0	0/1:50:35,15:35:1239:15:540:-23.3152,0,-96.7622	1/1:145:0,145:0:0:145:5195:-366.433,-43.6494,0	1/1:165:0,165:0:0:165:5924:-416.143,-49.67,0	1/1:101:0,101:0:0:101:3616:-255.257,-30.404,0	1/1:52:0,52:0:0:52:1868:-131.472,-15.6536,0	0/1:5:1,4:1:36:4:144:-8.93285,0,-2.09312	1/1:112:4,108:4:144:108:3872:-256.605,-20.4017,0	1/1:137:0,137:0:0:137:4912:-347.904,-41.2411,0	1/1:215:0,215:0:0:215:7716:-542.347,-64.7215,0	0/1:90:48,42:48:1707:42:1508:-78.0134,0,-126.822	1/1:75:0,75:0:0:75:2692:-189.552,-22.5773,0	0/1:107:50,57:50:1796:57:2044:-112.56,0,-129.706	0/1:142:67,75:67:2387:75:2688:-147.121,0,-172.318	0/1:33:13,20:13:468:20:716:-41.472,0,-32.5257	1/1:90:0,90:0:0:90:3220:-224.854,-27.0927,0	1/1:67:0,67:0:0:67:2404:-168.693,-20.169,0	0/1:47:28,19:28:1000:19:669:-32.9356,0,-76.167	0/1:115:54,61:54:1927:61:2168:-119.154,0,-139.074	0/1:76:49,27:49:1740:27:972:-46.1004,0,-134	1/1:112:1,111:1:36:111:3976:-271.93,-30.1171,0	1/1:74:0,74:0:0:74:2624:-184.103,-22.2762,0
chr06	29281911	.	ATTGTTGTTGGTGGTC	ATTGTTGGTGGTC,ATTGTTGTGGGTGGTC	128882	PASS	AB=0.424987,0.561214;ABP=197.824,132.745;AC=137,49;AF=0.736559,0.263441;AN=186;AO=6195,2256;CIGAR=1M3D12M,8M1X7M;DP=8510;DPB=7348.12;DPRA=93.4945,0.919509;EPP=13204.6,4815.38;EPPR=18.2106;GTI=0;LEN=3,1;MEANALT=2.0989,2.8;MQM=28.9638,59.8355;MQMR=60;NS=93;NUMALT=2;ODDS=0.501168;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=178595,79988;QR=245;RO=7;RPL=6166,2246;RPP=13204.6,4815.38;RPPR=18.2106;RPR=29,10;RUN=1,1;SAF=0,0;SAP=13455.3,4901.85;SAR=6195,2256;SRF=0;SRP=18.2106;SRR=7;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:13:0,5,8:0:0:5,8:145,284:-33.6501,-23.4951,-21.99,-10.4514,0,-8.04313	1/2:120:0,54,65:0:0:54,65:1555,2291:-295.819,-186.526,-170.27,-109.236,0,-89.6689	1/2:135:0,51,83:0:0:51,83:1476,2947:-343.918,-240.27,-224.918,-103.734,0,-78.7485	1/1:184:0,184,0:0:0:184,0:5288,0:-427.364,-55.3895,0,-427.364,-55.3895,-427.364	1/1:64:0,63,1:0:0:63,1:1836,36:-148.444,-18.9649,0,-145.505,-15.6676,-145.204	1/1:14:0,14,0:0:0:14,0:406,0:-33.1515,-4.21442,0,-33.1515,-4.21442,-33.1515	1/1:162:0,162,0:0:0:162,0:4677,0:-377.849,-48.7669,0,-377.849,-48.7669,-377.849	1/2:92:0,34,53:0:0:34,53:989,1875:-222.437,-152.815,-142.58,-69.6629,0,-53.7083	1/2:87:0,50,37:0:0:50,37:1458,1294:-208.496,-105.611,-90.5595,-103.197,0,-92.0592	1/2:78:0,38,39:0:0:38,39:1102,1367:-188.724,-111.312,-99.8729,-77.4647,0,-65.7246	1/2:63:0,23,38:0:0:23,38:656,1360:-157.019,-110.951,-104.027,-46.0569,0,-34.6178	1/1:71:0,71,0:0:0:71,0:2058,0:-166.262,-21.3731,0,-166.262,-21.3731,-166.262	1/2:80:0,36,43:0:0:36,43:1047,1512:-196.76,-123.071,-112.233,-73.6438,0,-60.6995	1/2:79:0,39,40:0:0:39,40:1128,1403:-193.686,-114.508,-102.767,-79.4827,0,-67.4415	1/2:56:0,18,37:0:0:18,37:522,1307:-142.902,-106.242,-100.823,-36.642,0,-25.5039	1/1:58:0,58,0:0:0:58,0:1685,0:-136.371,-17.4597,0,-136.371,-17.4597,-136.371	1/1:66:0,66,0:0:0:66,0:1912,0:-154.616,-19.868,0,-154.616,-19.868,-154.616	1/1:63:0,63,0:0:0:63,0:1828,0:-147.729,-18.9649,0,-147.729,-18.9649,-147.729	1/2:42:2,19,21:2:71:19,21:545,752:-93.0814,-55.5433,-55.6086,-32.305,0,-31.7779	1/2:210:0,100,106:0:0:100,106:2893,3796:-512.787,-309.553,-279.45,-203.185,0,-171.276	1/2:146:0,60,85:0:0:60,85:1735,2963:-362.849,-240.959,-222.897,-121.829,0,-96.2416	1/1:131:0,131,0:0:0:131,0:3770,0:-304.608,-39.4349,0,-304.608,-39.4349,-304.608	1/2:79:0,30,48:0:0:30,48:851,1706:-198.762,-139.144,-130.114,-59.6974,0,-45.2479	1/1:105:0,101,4:0:0:101,4:2921,144:-235.669,-30.404,0,-223.915,-18.2945,-222.711	1/2:102:0,45,56:0:0:45,56:1295,1980:-252.29,-161.295,-147.749,-90.9767,0,-74.119	1/1:253:0,253,0:0:0:253,0:7275,0:-588.062,-76.1606,0,-588.062,-76.1606,-588.062	1/2:111:1,58,51:1:36:58,51:1680,1828:-263.92,-146.152,-131.629,-115.086,0,-102.672	1/2:36:0,18,18:0:0:18,18:516,644:-88.9539,-52.8544,-47.4359,-36.4065,0,-30.988	1/2:261:1,106,152:1:35:106,152:3046,5413:-652.329,-438.407,-409.346,-211.395,0,-168.487	1/2:112:1,36,74:1:31:36,74:1041,2623:-284.192,-211.201,-202.852,-70.7618,0,-50.9753	1/2:109:0,44,64:0:0:44,64:1257,2259:-272.092,-183.941,-170.696,-88.0887,0,-68.8228	1/1:4:0,4,0:0:0:4,0:116,0:-9.6172,-1.20412,0,-9.6172,-1.20412,-9.6172	1/1:26:0,26,0:0:0:26,0:749,0:-60.6312,-7.82678,0,-60.6312,-7.82678,-60.6312	1/1:3:0,3,0:0:0:3,0:87,0:-7.27788,-0.90309,0,-7.27788,-0.90309,-7.27788	1/1:3:0,3,0:0:0:3,0:87,0:-7.27788,-0.90309,0,-7.27788,-0.90309,-7.27788	.:.:.:.:.:.:.:.	1/2:205:0,95,107:0:0:95,107:2734,3797:-501.55,-309.411,-280.813,-192.149,0,-159.939	1/1:180:0,180,0:0:0:180,0:5225,0:-422.43,-54.1854,0,-422.43,-54.1854,-422.43	1/2:70:0,22,44:0:0:22,44:653,1538:-171.507,-125.121,-118.498,-46.3594,0,-33.1141	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:160:0,49,109:0:0:49,109:1414,3875:-415.003,-315.784,-301.034,-99.1748,0,-66.3626	1/1:38:0,38,0:0:0:38,0:1082,0:-87.5645,-11.4391,0,-87.5645,-11.4391,-87.5645	1/2:139:0,46,92:0:0:46,92:1317,3262:-358.652,-265.786,-251.939,-92.8469,0,-65.1521	1/2:69:0,23,46:0:0:23,46:667,1624:-179.439,-132.589,-125.666,-47.1406,0,-33.2932	1/1:58:0,58,0:0:0:58,0:1669,0:-135.062,-17.4597,0,-135.062,-17.4597,-135.062	1/1:75:0,75,0:0:0:75,0:2149,0:-173.582,-22.5773,0,-173.582,-22.5773,-173.582	1/2:118:0,51,65:0:0:51,65:1476,2320:-293.234,-189.154,-173.801,-104.045,0,-84.4785	1/1:155:0,153,2:0:0:153,2:4369,72:-352.394,-46.0576,0,-346.517,-39.8229,-345.915	1/1:103:0,103,0:0:0:103,0:2961,0:-239.59,-31.0061,0,-239.59,-31.0061,-239.59	1/2:128:0,54,72:0:0:54,72:1557,2550:-317.228,-207.716,-191.46,-109.455,0,-87.7812	1/1:195:0,195,0:0:0:195,0:5627,0:-454.379,-58.7009,0,-454.379,-58.7009,-454.379	1/2:7:0,4,3:0:0:4,3:116,108:-17.2619,-9.16568,-7.96156,-8.41308,0,-7.50999	1/1:171:0,170,0:0:0:170,0:4933,0:-398.335,-51.1751,0,-398.335,-51.1751,-398.335	1/2:38:0,13,25:0:0:13,25:377,896:-99.8987,-73.4346,-69.5212,-26.7577,0,-19.2319	1/2:8:0,4,4:0:0:4,4:116,127:-18.6647,-10.5403,-9.33619,-8.41308,0,-7.20896	1/2:142:0,69,72:0:0:69,72:1990,2543:-346.903,-207.083,-186.311,-139.767,0,-118.093	1/1:76:0,76,0:0:0:76,0:220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chr06	29363294	.	G	A	27844.9	PASS	AB=0.470733;ABP=30.2107;AC=47;AF=0.25;AN=188;AO=1741;CIGAR=1X;DP=8268;DPB=8268;DPRA=0.979847;EPP=3783.54;EPPR=13981.3;GTI=2;LEN=1;MEANALT=1.07143;MQM=59.8903;MQMR=59.9626;NS=94;NUMALT=1;ODDS=0.305141;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61947;QR=232412;RO=6517;RPL=1741;RPP=3783.54;RPPR=13981.3;RPR=0;RUN=1;SAF=0;SAP=3783.54;SAR=1741;SRF=0;SRP=14154.5;SRR=6517;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:20,18:20:720:18:635:-46.0385,0,-53.6896	0/1:155:85,70:85:3036:70:2471:-175.709,0,-226.811	0/1:150:82,68:82:2914:68:2423:-173.172,0,-217.341	0/0:241:240,0:240:8546:0:0:0,-72.2472,-768.782	0/0:84:83,1:83:2959:1:36:0,-21.6882,-262.945	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:121:121,0:121:4331:0:0:0,-36.4246,-389.738	0/1:143:79,64:79:2810:64:2288:-163.134,0,-210.092	0/1:56:34,21:34:1216:21:748:-50.729,0,-92.83	0/1:120:56,64:56:1996:64:2279:-169.246,0,-143.79	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/1:38:15,23:15:540:23:828:-63.405,0,-37.4974	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/1:41:23,18:23:820:18:644:-45.9484,0,-61.7803	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/1:21:9,12:9:320:12:423:-32.0834,0,-22.8207	0/1:231:120,111:120:4284:111:3967:-287.682,0,-316.201	0/1:86:48,38:48:1704:38:1356:-96.4519,0,-127.7	0/0:135:135,0:135:4828:0:0:0,-40.639,-434.611	0/1:80:46,34:46:1636:34:1221:-86.0278,0,-123.446	0/0:119:110,9:110:3931:9:320:0,-6.68021,-324.84	0/1:54:17,37:17:608:37:1315:-102.395,0,-38.7964	0/0:294:293,0:293:10458:0:0:0,-88.2018,-940.782	0/1:185:88,97:88:3139:97:3453:-255.292,0,-227.045	0/1:30:18,12:18:648:12:423:-29.3742,0,-49.621	0/1:302:150,152:150:5333:152:5418:-396.84,0,-389.195	0/1:108:57,51:57:2022:51:1824:-131.93,0,-149.74	0/1:119:72,47:72:2580:47:1684:-115.867,0,-196.627	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:99:0:0:0,-0.90309,-8.72819	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:118:56,62:56:1987:62:2182:-161.119,0,-143.582	0/0:223:223,0:223:7987:0:0:0,-67.1297,-718.851	0/1:36:18,18:18:640:18:648:-47.8148,0,-47.0922	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:226:127,99:127:4533:99:3524:-249.331,0,-340.104	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:127:71,56:71:2496:56:1976:-139.882,0,-186.66	0/1:36:20,16:20:712:16:556:-39.5301,0,-53.5696	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:133:132,1:132:4702:1:36:0,-36.4387,-419.743	0/1:107:58,49:58:2063:49:1756:-126.114,0,-153.73	0/0:197:194,1:194:6935:1:36:0,-55.4374,-620.668	0/0:129:129,0:129:4620:0:0:0,-38.8329,-415.961	0/1:159:81,78:81:2895:78:2747:-199.507,0,-212.922	0/0:142:142,0:142:5038:0:0:0,-42.7463,-453.567	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:155:155,0:155:5543:0:0:0,-46.6596,-498.988	0/1:63:41,22:41:1476:22:788:-52.279,0,-114.171	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:133:78,55:78:2776:55:1965:-137.087,0,-210.045	0/0:62:61,1:61:2187:1:36:0,-15.0656,-193.497	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:57:33,24:33:1158:24:848:-59.4809,0,-87.3663	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.249	0/1:7:2,5:2:68:5:172:-13.7108,0,-4.3505	0/0:230:230,0:230:8192:0:0:0,-69.2369,-737.296	0/0:201:199,2:199:7101:2:68:0,-54.0493,-632.686	0/1:60:38,22:38:1352:22:788:-53.183,0,-103.919	0/1:90:48,42:48:1724:42:1490:-107.302,0,-128.353	0/0:166:163,3:163:5817:3:108:0,-39.8958,-513.56	0/0:112:109,1:109:3887:1:36:0,-29.8749,-345.8	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.488	0/0:59:59,0:59:2094:0:0:0,-17.7608,-188.729	0/1:14:8,6:8:288:6:203:-14.3858,0,-22.053	0/0:122:122,0:122:4333:0:0:0,-36.7257,-390.147	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	0/0:102:102,0:102:3640:0:0:0,-30.7051,-327.805	0/0:156:156,0:156:5542:0:0:0,-46.9607,-498.907	0/0:97:97,0:97:3458:0:0:0,-29.1999,-311.432	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:155:154,1:154:5495:1:36:0,-43.0614,-491.08	0/0:114:114,0:114:4087:0:0:0,-34.3174,-367.959	0/0:236:236,0:236:8395:0:0:0,-71.0431,-755.55	0/1:77:40,37:40:1424:37:1311:-95.1061,0,-105.278	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:63:31,32:31:1116:32:1131:-83.1327,0,-81.6569	0/1:90:43,47:43:1544:47:1688:-125.086,0,-112.16	0/1:24:17,7:17:604:7:239:-14.618,0,-47.4659	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:36:11,24:11:396:24:860:-66.826,0,-25.0869	0/1:51:27,24:27:956:24:847:-61.1938,0,-71.0032	0/0:123:121,0:121:4307:0:0:0,-36.4246,-387.42	0/0:54:54,0:54:1906:0:0:0,-16.2556,-171.816
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chr06	29507034	.	A	C	261761	PASS	AB=0.539548;ABP=87.6845;AC=138;AF=0.75;AN=184;AO=10213;CIGAR=1X;DP=13103;DPB=13103;DPRA=0;EPP=3.03603;EPPR=6.29465;GTI=2;LEN=1;MEANALT=1.1087;MQM=41.4994;MQMR=43.5806;NS=92;NUMALT=1;ODDS=0.739906;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=361613;QR=102864;RO=2880;RPL=132;RPP=21048.5;RPPR=6024.53;RPR=10081;RUN=1;SAF=5233;SAP=16.6198;SAR=4980;SRF=1434;SRP=3.11887;SRR=1446;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:28,32:28:1004:32:1136:-78.2497,0,-65.6671	0/1:215:84,131:84:3016:131:4659:-331.672,0,-192.33	0/1:181:83,98:83:2976:98:3500:-237.93,0,-195.427	1/1:299:1,298:1:32:298:10511:-903.704,-86.8097,0	1/1:79:1,78:1:32:78:2779:-230.048,-20.5857,0	1/1:73:1,72:1:36:72:2559:-208.902,-18.386,0	1/1:185:0,185:0:0:185:6494:-560.474,-55.6906,0	0/1:175:74,101:74:2652:101:3591:-252.55,0,-167.923	0/1:142:65,77:65:2320:77:2747:-190.842,0,-150.08	0/1:161:71,90:71:2535:90:3198:-225.262,0,-170.544	0/1:99:58,41:58:2054:41:1454:-97.0202,0,-150.548	1/1:148:0,148:0:0:148:5283:-448.619,-44.5524,0	0/1:190:106,84:106:3784:84:3008:-195.608,0,-257.513	0/1:135:63,71:63:2247:71:2499:-171.656,0,-150.87	0/1:130:67,63:67:2399:63:2248:-153.183,0,-166.379	1/1:110:0,110:0:0:110:3895:-335.158,-33.1133,0	0/1:127:58,69:58:2084:69:2448:-171.492,0,-139.728	1/1:103:0,103:0:0:103:3663:-310.314,-31.0061,0	0/1:85:41,44:41:1472:44:1564:-110.084,0,-99.1106	0/1:247:100,146:100:3571:146:5171:-364.12,0,-223.646	0/1:203:76,127:76:2692:127:4518:-320.469,0,-165.883	1/1:78:0,78:0:0:78:2737:-236.31,-23.4803,0	0/1:87:36,51:36:1280:51:1828:-131.227,0,-84.7918	1/1:164:1,163:1:36:163:5745:-484.642,-46.1228,0	0/1:101:50,51:50:1784:51:1792:-121.75,0,-120.37	1/1:387:0,387:0:0:387:13674:-1190.13,-116.499,0	0/1:269:103,166:103:3671:166:5845:-416.258,0,-227.365	0/1:102:45,57:45:1600:57:2016:-138.249,0,-105.553	0/1:277:89,188:89:3188:188:6664:-498.327,0,-194.366	0/1:115:43,72:43:1544:72:2524:-179.562,0,-96.5528	0/1:132:74,58:74:2639:58:2056:-137.699,0,-189.793	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	1/1:24:0,24:0:0:24:847:-71.918,-7.22472,0	1/1:3:0,3:0:0:3:100:-8.83049,-0.90309,0	1/1:4:0,4:0:0:4:144:-12.3185,-1.20412,0	1/1:11:0,11:0:0:11:392:-33.3446,-3.31133,0	0/1:321:166,154:166:5903:154:5385:-373.617,0,-417.98	1/1:143:0,143:0:0:143:5061:-430.373,-43.0473,0	0/1:135:71,64:71:2552:64:2262:-151.978,0,-174.626	.:.:.:.:.:.:.:.	0/1:235:107,128:107:3797:128:4558:-318.825,0,-256.584	1/1:59:0,59:0:0:59:2078:-177.368,-17.7608,0	0/1:143:82,61:82:2932:61:2171:-140.644,0,-205.97	0/1:151:73,78:73:2616:78:2762:-192.105,0,-180.875	1/1:121:0,121:0:0:121:4299:-368.506,-36.4246,0	1/1:158:0,158:0:0:158:5564:-477.595,-47.5627,0	0/1:184:80,104:80:2872:104:3700:-261.076,0,-179.086	1/1:225:0,224:0:0:224:7985:-686.37,-67.4307,0	1/1:202:0,202:0:0:202:7103:-607.009,-60.8081,0	0/1:150:55,95:55:1968:95:3349:-243.361,0,-123.162	1/1:192:0,192:0:0:192:6776:-583.677,-57.7978,0	0/1:4:2,2:2:72:2:72:-5.36319,0,-5.15356	1/1:301:0,300:0:0:300:10671:-922.746,-90.309,0	0/1:30:17,13:17:604:13:468:-32.0176,0,-44.6371	0/1:4:1,3:1:36:3:104:-8.14447,0,-0.882465	0/1:206:86,120:86:3067:120:4229:-292.452,0,-199.135	1/1:67:0,67:0:0:67:2387:-206.614,-20.169,0	0/1:5:3,2:3:108:2:72:-4.99969,0,-8.08093	1/1:13:0,13:0:0:13:455:-39.9291,-3.91339,0	0/1:73:38,35:38:1360:35:1244:-83.5342,0,-94.9752	1/1:163:2,161:2:72:161:5694:-484.655,-42.2442,0	.:.:.:.:.:.:.:.	1/1:233:0,233:0:0:233:8247:-715.623,-70.14,0	1/1:265:0,264:0:0:264:9376:-809.73,-79.4719,0	0/1:89:40,49:40:1420:49:1727:-121.373,0,-95.6259	0/1:121:44,77:44:1566:77:2705:-196.861,0,-100.343	1/1:192:5,187:5:180:187:6637:-548.815,-42.2718,0	1/1:126:3,123:3:104:123:4324:-364.018,-28.4713,0	1/1:50:0,50:0:0:50:1774:-152.248,-15.0515,0	1/1:116:0,115:0:0:115:4090:-344.835,-34.6185,0	1/1:184:0,184:0:0:184:6472:-561.358,-55.3895,0	0/1:16:11,5:11:396:5:180:-10.9818,0,-28.9606	1/1:111:1,110:1:36:110:3885:-325.83,-29.8251,0	0/1:118:63,54:63:2256:54:1929:-127.557,0,-150.873	1/1:258:0,258:0:0:258:9089:-774.017,-77.6657,0	1/1:233:0,233:0:0:233:8248:-704.262,-70.14,0	1/1:93:0,93:0:0:93:3320:-277.495,-27.9958,0	1/1:211:0,211:0:0:211:7506:-629.961,-63.5173,0	0/1:8:3,5:3:108:5:180:-13.4907,0,-6.33795	1/1:175:0,175:0:0:175:6203:-522.781,-52.6803,0	1/1:192:0,192:0:0:192:6813:-572.223,-57.7978,0	1/1:296:0,296:0:0:296:10471:-894.111,-89.1049,0	0/1:188:78,110:78:2796:110:3927:-282.089,0,-185.062	1/1:151:0,151:0:0:151:5336:-458.102,-45.4555,0	0/1:164:90,74:90:3228:74:2606:-173.28,0,-225.43	0/1:219:110,108:110:3912:108:3807:-264.088,0,-270.737	0/1:88:47,41:47:1676:41:1461:-96.2161,0,-114.364	1/1:130:0,130:0:0:130:4627:-397.986,-39.1339,0	1/1:148:0,148:0:0:148:5279:-454.312,-44.5524,0	0/1:88:45,43:45:1600:43:1522:-103.19,0,-107.839	0/1:130:53,77:53:1908:77:2700:-192.101,0,-124.148	0/1:130:85,44:85:3035:44:1576:-98.3469,0,-222.539	1/1:151:1,150:1:36:150:5307:-449.288,-41.8887,0	1/1:242:0,242:0:0:242:8515:-734.185,-72.8493,0
chr06	29507049	.	C	T	59341.2	PASS	AB=0.460307;ABP=88.5124;AC=46;AF=0.25;AN=184;AO=2892;CIGAR=1X;DP=13174;DPB=13174;DPRA=0.918148;EPP=6282.91;EPPR=22312.7;GTI=2;LEN=1;MEANALT=1.07547;MQM=43.6127;MQMR=41.545;NS=92;NUMALT=1;ODDS=0.8111;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103279;QR=363989;RO=10274;RPL=1386;RPP=13.8226;RPPR=4.95816;RPR=1506;RUN=1;SAF=1386;SAP=13.8226;SAR=1506;SRF=5185;SRP=4.95816;SRR=5089;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:32,27:32:1144:27:968:-62.924,0,-79.3595	0/1:217:133,84:133:4721:84:2982:-189.709,0,-336.213	0/1:179:97,82:97:3426:82:2952:-194.26,0,-235.103	0/0:297:297,0:297:10592:0:0:0,-89.4059,-912.268	0/0:81:81,0:81:2861:0:0:0,-24.3834,-241.769	0/0:74:73,1:73:2577:1:36:0,-18.687,-211.261	0/0:182:181,0:181:6441:0:0:0,-54.4864,-553.796	0/1:170:100,70:100:3550:70:2488:-156.717,0,-250.12	0/1:144:74,70:74:2635:70:2508:-163.53,0,-179.431	0/1:161:86,75:86:3048:75:2663:-181.249,0,-212.804	0/1:98:40,58:40:1421:58:2080:-152.92,0,-94.7727	0/0:152:152,0:152:5360:0:0:0,-45.7566,-457.057	0/1:183:84,99:84:2997:99:3539:-242.206,0,-197.142	0/1:137:72,64:72:2522:64:2293:-153.244,0,-172.415	0/1:129:63,66:63:2264:66:2344:-163.155,0,-154.718	0/0:108:108,0:108:3831:0:0:0,-32.5112,-329.794	0/1:129:70,59:70:2466:59:2116:-141.769,0,-172.767	0/0:106:106,0:106:3723:0:0:0,-31.9092,-315.677	0/1:86:44,42:44:1568:42:1499:-101.979,0,-110.136	0/1:249:150,98:150:5332:98:3460:-217.197,0,-376.16	0/1:202:125,77:125:4450:77:2749:-171.093,0,-315.014	0/0:79:79,0:79:2757:0:0:0,-23.7814,-236.519	0/1:88:52,36:52:1852:36:1281:-85.0202,0,-133.256	0/0:165:164,1:164:5829:1:32:0,-46.6463,-491.597	0/1:104:53,51:53:1881:51:1826:-123.003,0,-128.5	0/0:393:393,0:393:13920:0:0:0,-118.305,-1210.6	0/1:273:169,104:169:6009:104:3732:-231.682,0,-429.507	0/1:99:55,44:55:1935:44:1568:-103.426,0,-132.601	0/1:283:190,93:190:6727:93:3347:-206.616,0,-502.447	0/1:117:72,45:72:2553:45:1612:-101.839,0,-180.942	0/1:131:58,73:58:2075:73:2603:-187.618,0,-139.1	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.63623	0/0:23:23,0:23:796:0:0:0,-6.92369,-68.4789	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.39968	0/0:5:5,0:5:171:0:0:0,-1.50515,-14.9871	0/0:11:11,0:11:387:0:0:0,-3.31133,-33.0753	0/1:326:152,173:152:5324:173:6173:-440.055,0,-366.888	0/0:145:145,0:145:5137:0:0:0,-43.6493,-438.486	0/1:138:68,70:68:2396:70:2520:-171.266,0,-163.164	.:.:.:.:.:.:.:.	0/1:233:125,108:125:4457:108:3857:-261.789,0,-310.838	0/0:64:64,0:64:2234:0:0:0,-19.2659,-192.137	0/1:141:60,81:60:2126:81:2868:-202.238,0,-137.927	0/1:152:79,73:79:2768:73:2607:-179.678,0,-192.084	0/0:124:124,0:124:4312:0:0:0,-37.3277,-370.305	0/0:158:158,0:158:5599:0:0:0,-47.5627,-480.874	0/1:179:102,77:102:3640:77:2768:-172.712,0,-257.212	0/0:232:232,0:232:8250:0:0:0,-69.839,-710.701	0/0:201:201,0:201:7106:0:0:0,-60.507,-606.521	0/1:151:94,57:94:3359:57:2039:-129.313,0,-243.487	0/0:191:190,0:190:6754:0:0:0,-57.1957,-580.226	0/1:4:2,2:2:72:2:72:-5.15356,0,-5.36319	0/0:307:307,0:307:10905:0:0:0,-92.4162,-943.491	0/1:31:13,18:13:460:18:648:-47.4279,0,-31.1673	0/1:4:3,1:3:104:1:36:-0.882465,0,-8.14447	0/1:208:121,86:121:4281:86:3088:-200.556,0,-297.51	0/0:68:68,0:68:2414:0:0:0,-20.47,-209.029	0/1:5:2,3:2:72:3:108:-8.08093,0,-4.99969	0/0:13:13,0:13:460:0:0:0,-3.91339,-40.2541	0/1:77:37,40:37:1315:40:1421:-99.1792,0,-87.9586	0/0:163:161,2:161:5731:2:72:0,-42.2442,-486.834	.:.:.:.:.:.:.:.	0/0:232:231,1:231:8157:1:36:0,-66.6513,-706.925	0/0:268:268,0:268:9548:0:0:0,-80.676,-825.214	0/1:91:50,41:50:1772:41:1457:-98.3215,0,-123.469	0/1:122:79,43:79:2789:43:1544:-98.1799,0,-204.647	0/0:191:186,5:186:6670:5:176:0,-42.1755,-551.066	0/0:130:125,5:125:4440:5:180:0,-23.4726,-367.224	0/0:53:53,0:53:1848:0:0:0,-15.9546,-159.123	0/0:118:118,0:118:4181:0:0:0,-35.5215,-353.49	0/0:187:187,0:187:6556:0:0:0,-56.2926,-568.149	0/1:17:5,12:5:180:12:428:-31.5349,0,-10.6808	0/0:110:109,1:109:3844:1:36:0,-29.5241,-321.564	0/1:115:53,62:53:1886:62:2222:-148.539,0,-125.452	0/0:258:257,0:257:9084:0:0:0,-77.3647,-775.885	0/0:233:232,0:232:8259:0:0:0,-69.839,-706.094	0/0:92:92,0:92:3248:0:0:0,-27.6948,-271.431	0/0:207:207,0:207:7336:0:0:0,-62.3132,-615.855	0/1:8:5,3:5:176:3:108:-6.33795,0,-13.2658	0/0:178:178,0:178:6305:0:0:0,-53.5833,-531.391	0/0:188:188,0:188:6667:0:0:0,-56.5936,-561.359	0/0:301:301,0:301:10637:0:0:0,-90.61,-909.46	0/1:189:112,77:112:3967:77:2746:-180.518,0,-285.466	0/0:153:153,0:153:5410:0:0:0,-46.0576,-465.064	0/1:165:75,90:75:2634:90:3212:-224.642,0,-176.254	0/1:218:107,111:107:3758:111:3951:-274.751,0,-261.029	0/1:90:43,47:43:1519:47:1671:-113.664,0,-100.315	0/0:131:131,0:131:4594:0:0:0,-39.4349,-395.666	0/0:153:153,0:153:5470:0:0:0,-46.0576,-471.002	0/1:82:40,42:40:1406:42:1496:-101.787,0,-95.8472	0/1:135:77,58:77:2711:58:2065:-136.901,0,-190.752	0/1:129:45,84:45:1595:84:2996:-219.528,0,-100.259	0/0:150:150,0:150:5314:0:0:0,-45.1545,-454.516	0/0:247:247,0:247:8796:0:0:0,-74.3544,-758.549
chr06	29583600	.	T	C	41282.7	PASS	AB=0.411992;ABP=438.352;AC=47;AF=0.25;AN=188;AO=2710;CIGAR=1X;DP=13666;DPB=13666;DPRA=1.2602;EPP=5870.34;EPPR=23579;GTI=5;LEN=1;MEANALT=1.11667;MQM=59.9712;MQMR=59.9421;NS=94;NUMALT=1;ODDS=2.17146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96572;QR=388330;RO=10941;RPL=2708;RPP=5870.34;RPPR=23613.7;RPR=2;RUN=1;SAF=0;SAP=5887.7;SAR=2710;SRF=4;SRP=23726.4;SRR=10937;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:40,35:40:1436:35:1244:-89.6874,0,-106.96	0/1:193:109,83:109:3884:83:2968:-209.344,0,-291.739	0/1:179:86,92:86:3048:92:3255:-239.226,0,-220.609	0/0:624:623,0:623:22151:0:0:0,-187.542,-1992.57	0/0:268:266,2:266:9430:2:72:0,-73.8393,-841.564	0/0:131:131,0:131:4664:0:0:0,-39.4349,-419.925	0/0:199:197,1:197:6950:1:36:0,-56.3256,-621.563	0/1:192:97,95:97:3427:95:3339:-242.931,0,-249.83	0/1:135:76,59:76:2707:59:2116:-150.07,0,-203.165	0/1:99:56,43:56:1992:43:1525:-107.737,0,-149.752	0/1:51:21,30:21:748:30:1053:-79.7249,0,-52.2928	0/0:84:83,0:83:2956:0:0:0,-24.9855,-265.994	0/1:71:32,39:32:1140:39:1392:-104.206,0,-81.5361	0/1:44:21,23:21:744:23:820:-60.8772,0,-54.0388	0/1:81:43,38:43:1540:38:1364:-98.6773,0,-114.51	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:79:46,33:46:1644:33:1184:-83.0869,0,-124.467	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.471	0/1:37:13,24:13:464:24:852:-65.8623,0,-30.9594	0/1:604:375,229:375:13290:229:8160:-552.595,0,-1014.09	0/1:226:125,101:125:4428:101:3595:-255.717,0,-330.504	0/0:174:172,2:172:6089:2:68:0,-45.925,-541.438	0/1:200:127,73:127:4492:73:2608:-174.762,0,-344.248	0/0:172:159,13:159:5644:13:468:0,-9.33522,-465.645	0/1:115:53,62:53:1875:62:2220:-165.446,0,-134.41	0/0:477:476,1:476:16747:1:36:0,-139.993,-1503.3	0/1:190:94,96:94:3301:96:3428:-251.539,0,-240.114	0/1:40:24,16:24:860:16:568:-39.4107,0,-65.6806	0/1:298:159,139:159:5653:139:4988:-359.36,0,-419.186	0/1:257:191,66:191:6776:66:2351:-134.476,0,-532.467	0/1:295:217,77:217:7724:77:2736:-157.698,0,-606.404	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:11:11,0:11:376:0:0:0,-3.31133,-34.1693	0/1:226:106,120:106:3776:120:4285:-317.786,0,-272.005	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.573	0/1:50:24,26:24:852:26:928:-68.7868,0,-61.9489	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:255:203,51:203:7216:51:1820:-87.3369,0,-572.76	0/0:40:40,0:40:1416:0:0:0,-12.0412,-127.737	0/1:208:134,74:134:4749:74:2631:-174.423,0,-364.586	0/1:68:40,28:40:1432:28:1008:-70.5663,0,-108.708	0/0:60:60,0:60:2116:0:0:0,-18.0618,-190.71	0/0:118:118,0:118:4192:0:0:0,-35.5215,-377.465	0/1:245:167,78:167:5924:78:2804:-178.847,0,-459.515	0/0:112:109,3:109:3835:3:104:0,-24.0126,-335.644	0/0:141:141,0:141:4996:0:0:0,-42.4452,-449.794	0/1:389:263,125:263:9340:125:4452:-283.771,0,-723.479	0/0:234:234,0:234:8336:0:0:0,-70.441,-750.239	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/0:225:224,0:224:7934:0:0:0,-67.4307,-713.725	0/1:174:106,68:106:3776:68:2392:-163.154,0,-287.662	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:413:237,176:237:8417:176:6267:-439.762,0,-633.215	0/0:91:91,0:91:3236:0:0:0,-27.3937,-291.463	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:118:64,54:64:2269:54:1920:-137.556,0,-168.95	0/0:90:87,3:87:3088:3:104:0,-17.3899,-268.441	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:326:324,0:324:11501:0:0:0,-97.5337,-1034.73	0/0:283:279,4:279:9882:4:144:0,-71.8779,-875.856	0/1:95:36,59:36:1284:59:2093:-160.04,0,-87.2656	0/1:143:94,49:94:3329:49:1756:-115.277,0,-256.781	0/0:251:249,2:249:8845:2:68:0,-69.1008,-789.587	0/0:208:204,4:204:7292:4:144:0,-49.3006,-643.013	0/0:20:19,0:19:660:0:0:0,-5.71957,-59.4495	0/0:90:89,0:89:3168:0:0:0,-26.7917,-285.144	0/0:64:63,1:63:2224:1:36:0,-15.6676,-196.819	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/0:109:109,0:109:3872:0:0:0,-32.8123,-348.674	0/1:74:49,25:49:1748:25:892:-58.3235,0,-135.32	0/0:228:228,0:228:8132:0:0:0,-68.6348,-731.891	0/0:279:279,0:279:9940:0:0:0,-83.9874,-894.526	0/0:214:214,0:214:7584:0:0:0,-64.4204,-682.595	0/0:131:131,0:131:4644:0:0:0,-39.4349,-418.128	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:201:200,0:200:7120:0:0:0,-60.206,-640.579	0/0:284:283,1:283:10041:1:36:0,-81.8942,-900.039	0/0:314:309,4:309:11008:4:144:0,-81.2047,-977.168	0/1:94:44,50:44:1556:50:1792:-133.259,0,-112.035	0/0:58:57,1:57:2024:1:36:0,-13.8615,-178.834	0/1:76:42,34:42:1488:34:1216:-86.8683,0,-111.336	0/1:121:54,67:54:1936:67:2375:-177.583,0,-138.092	0/1:53:27,26:27:951:26:928:-67.8837,0,-69.9204	0/0:91:91,0:91:3224:0:0:0,-27.3937,-290.385	0/0:75:75,0:75:2640:0:0:0,-22.5772,-237.849	0/1:23:12,11:12:423:11:388:-28.3337,0,-31.4814	0/1:70:39,31:39:1373:31:1099:-78.148,0,-102.794	0/1:73:22,51:22:780:51:1832:-143.186,0,-48.5478	0/0:396:396,0:396:14057:0:0:0,-119.208,-1264.89	0/0:107:107,0:107:3796:0:0:0,-32.2102,-341.842
chr06	29583602	.	T	G	242514	PASS	AB=0.592582;ABP=502.792;AC=142;AF=0.755319;AN=188;AO=11477;CIGAR=1X;DP=14259;DPB=14259;DPRA=0;EPP=24794.9;EPPR=6011.48;GTI=5;LEN=1;MEANALT=1.09574;MQM=59.9438;MQMR=59.9578;NS=94;NUMALT=1;ODDS=4.29946;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=407988;QR=99385;RO=2771;RPL=11466;RPP=24829.5;RPPR=6011.48;RPR=11;RUN=1;SAF=4;SAP=24890.3;SAR=11473;SRF=0;SRP=6020.16;SRR=2771;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:35,42:35:1245:42:1504:-112.475,0,-89.1734	0/1:196:86,110:86:3080:110:3928:-294.704,0,-218.426	0/1:188:96,92:96:3444:92:3263:-237.299,0,-253.151	1/1:657:1,656:1:36:656:23277:-2090.67,-194.178,0	1/1:278:1,277:1:36:277:9870:-884.613,-80.0881,0	1/1:142:0,142:0:0:142:5061:-455.637,-42.7463,0	1/1:202:1,200:1:36:200:7092:-634.565,-57.2237,0	0/1:200:100,100:100:3588:100:3567:-260.761,0,-262.92	0/1:142:62,80:62:2232:80:2827:-211.893,0,-158.397	0/1:104:45,59:45:1597:59:2103:-158.232,0,-112.701	0/1:53:31,22:31:1116:22:784:-54.9293,0,-84.79	1/1:86:0,86:0:0:86:3035:-273.38,-25.8886,0	0/1:72:39,33:39:1400:33:1180:-84.8339,0,-104.625	0/1:45:24,21:24:864:21:752:-54.4595,0,-64.5362	0/1:81:38,43:38:1364:43:1532:-113.79,0,-98.6773	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:80:31,47:31:1112:47:1679:-127.556,0,-76.5513	1/1:56:0,56:0:0:56:1997:-179.957,-16.8577,0	0/1:38:25,12:25:900:12:428:-27.3611,0,-69.8231	0/1:618:229,388:229:8217:388:13793:-1055.06,0,-553.442	0/1:234:107,127:107:3840:127:4490:-333.673,0,-275.35	1/1:181:1,180:1:36:180:6360:-568.897,-50.8882,0	0/1:212:76,136:76:2728:136:4835:-371.486,0,-181.933	1/1:184:13,171:13:468:171:6037:-500.998,-12.9476,0	0/1:120:65,55:65:2321:55:1964:-140.912,0,-173.025	1/1:509:1,508:1:36:508:18048:-1620.22,-149.626,0	0/1:200:96,104:96:3448:104:3691:-272.189,0,-250.326	0/1:41:17,24:17:612:24:856:-65.0189,0,-43.0712	0/1:307:138,169:138:4960:169:5998:-447.515,0,-354.131	0/1:266:69,197:69:2453:197:7023:-552.06,0,-140.941	0/1:316:79,237:79:2821:237:8433:-663.837,0,-159.002	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:9:0,9:0:0:9:318:-28.9604,-2.70927,0	1/1:4:0,3:0:0:3:104:-9.3463,-0.90309,0	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:231:123,108:123:4428:108:3858:-277.874,0,-329.143	1/1:67:0,67:0:0:67:2391:-215.441,-20.169,0	0/1:52:27,25:27:972:25:896:-65.3068,0,-72.1443	0/1:5:1,4:1:36:4:135:-10.9774,0,-2.09312	0/1:268:52,216:52:1864:216:7683:-610.832,0,-87.3634	1/1:42:0,42:0:0:42:1506:-135.833,-12.6433,0	0/1:209:70,139:70:2516:139:4915:-379.458,0,-163.776	0/1:69:28,41:28:1004:41:1463:-111.194,0,-69.9048	1/1:67:0,67:0:0:67:2364:-213.018,-20.169,0	1/1:122:0,122:0:0:122:4360:-392.574,-36.7257,0	0/1:259:81,178:81:2904:178:6344:-493.086,0,-183.629	1/1:119:2,117:2:72:117:4143:-366.213,-28.9858,0	1/1:150:0,150:0:0:150:5318:-478.758,-45.1545,0	0/1:397:126,271:126:4509:271:9657:-749.49,0,-286.467	1/1:246:1,245:1:36:245:8713:-780.556,-70.4551,0	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	1/1:234:0,234:0:0:234:8355:-751.956,-70.441,0	0/1:188:71,116:71:2556:116:4116:-313.973,0,-173.637	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:427:177,249:177:6356:249:8842:-667.174,0,-443.494	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:126:56,70:56:2000:70:2480:-185.295,0,-142.344	1/1:96:2,94:2:72:94:3367:-296.409,-22.0622,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:347:0,347:0:0:347:12304:-1107.21,-104.457,0	1/1:290:4,286:4:144:286:10149:-900.036,-73.9851,0	0/1:99:62,37:62:2217:37:1324:-89.6601,0,-169.991	0/1:151:51,100:51:1828:100:3592:-278.024,0,-119.345	1/1:265:2,263:2:72:263:9289:-829.153,-72.9362,0	1/1:220:4,216:4:144:216:7687:-678.06,-52.913,0	1/1:22:0,22:0:0:22:783:-70.7929,-6.62266,0	1/1:95:0,95:0:0:95:3358:-302.436,-28.5979,0	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	1/1:111:0,111:0:0:111:3897:-350.698,-33.4143,0	0/1:80:26,54:26:936:54:1928:-149.703,0,-60.4771	1/1:245:1,243:1:36:243:8602:-770.583,-70.2129,0	1/1:293:0,293:0:0:293:10416:-937.347,-88.2018,0	1/1:233:0,233:0:0:233:8289:-746.009,-70.14,0	1/1:135:0,135:0:0:135:4811:-433.147,-40.6391,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:207:0,207:0:0:207:7340:-660.656,-62.3132,0	1/1:295:1,294:1:36:294:10491:-940.513,-85.2056,0	1/1:323:3,320:3:108:320:11360:-1012.06,-87.1575,0	0/1:95:50,45:50:1792:45:1616:-117.132,0,-132.962	1/1:61:1,60:1:36:60:2140:-189.269,-14.7646,0	0/1:79:36,43:36:1296:43:1524:-113.672,0,-93.1626	0/1:122:67,55:67:2408:55:1939:-138.057,0,-180.25	0/1:55:26,29:26:936:29:1035:-76.8366,0,-68.0028	1/1:92:0,92:0:0:92:3288:-296.14,-27.6948,0	1/1:78:0,78:0:0:78:2788:-251.16,-23.4803,0	0/1:27:14,13:14:500:13:464:-33.9697,0,-37.2084	0/1:70:31,39:31:1116:39:1392:-104.507,0,-79.6796	0/1:74:55,19:55:1976:19:684:-39.6141,0,-155.838	1/1:407:3,402:3:93:402:14310:-1278.95,-113.58,0	1/1:113:0,113:0:0:113:3998:-360.013,-34.0164,0
chr06	29702491	.	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chr06	29702586	.	G	T	10710.3	PASS	AB=0.182347;ABP=9188.04;AC=43;AF=0.228723;AN=188;AO=1962;CIGAR=1X;DP=19342;DPB=19342;DPRA=1.55144;EPP=4134.15;EPPR=36447.2;GTI=17;LEN=1;MEANALT=1.03448;MQM=59.9399;MQMR=57.6071;NS=94;NUMALT=1;ODDS=3.41992;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69946;QR=622206;RO=17378;RPL=1947;RPP=4134.15;RPPR=36464.3;RPR=15;RUN=1;SAF=0;SAP=4263.44;SAR=1962;SRF=2;SRP=37721.5;SRR=17376;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:93:68,25:68:2404:25:885:-51.9707,0,-186.498	0/1:230:195,35:195:6980:35:1245:-43.1158,0,-553.341	0/1:272:200,72:200:7100:72:2584:-150.929,0,-555.841	0/0:373:368,5:368:13201:5:180:0,-95.7321,-1171.22	0/0:143:142,1:142:5085:1:36:0,-39.449,-454.125	0/0:152:152,0:152:5440:0:0:0,-45.7566,-489.15	0/0:216:216,0:216:7732:0:0:0,-65.0225,-694.076	0/1:326:257,68:257:9189:68:2410:-118.531,0,-725.218	0/1:238:172,66:172:6147:66:2360:-141.013,0,-478.824	0/1:199:170,29:170:6108:29:1025:-32.6557,0,-488.736	0/1:252:217,35:217:7780:35:1241:-36.1329,0,-622.387	0/0:180:180,0:180:6464:0:0:0,-54.1854,-581.585	0/1:187:163,24:163:5815:24:845:-20.0745,0,-464.83	0/1:239:205,34:205:7359:34:1220:-38.1606,0,-584.362	0/1:175:140,35:140:5019:35:1256:-60.665,0,-397.968	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.853	0/0:184:169,15:169:6056:15:540:0,-6.45298,-490.821	0/0:117:117,0:117:4181:0:0:0,-35.2205,-376.334	0/1:82:68,14:68:2444:14:500:-20.6517,0,-194.607	0/1:339:258,81:258:9234:81:2908:-159.906,0,-726.306	0/1:317:250,67:250:8937:67:2390:-119.929,0,-704.055	0/0:216:215,1:215:7699:1:36:0,-61.4332,-689.163	0/1:263:216,47:216:7719:47:1676:-71.9563,0,-613.307	0/0:179:174,5:174:6252:5:180:0,-37.3688,-545.726	0/1:182:145,37:145:5164:37:1302:-62.6907,0,-406.862	0/0:467:467,0:467:16737:0:0:0,-140.581,-1505.7	0/1:521:418,102:418:14987:102:3622:-169.322,0,-1187.66	0/0:92:84,8:84:3012:8:288:0,-1.42735,-244.043	0/1:638:516,122:516:18431:122:4329:-197.721,0,-1461.28	0/1:436:359,77:359:12844:77:2753:-116.761,0,-1020.69	0/1:376:299,77:299:10719:77:2742:-133.787,0,-849.115	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4881	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9632	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4456	0/1:547:439,108:439:15742:108:3861:-183.021,0,-1244.92	0/0:326:326,0:326:11676:0:0:0,-98.1358,-1050.56	0/1:162:140,22:140:4997:22:769:-20.7617,0,-396.288	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.052	0/1:365:298,67:298:10640:67:2408:-107.092,0,-844.33	0/0:79:79,0:79:2844:0:0:0,-23.7814,-255.405	0/1:351:286,65:286:10226:65:2313:-102.768,0,-812.153	0/1:179:156,23:156:5608:23:818:-20.0579,0,-449.417	0/0:123:123,0:123:4420:0:0:0,-37.0267,-396.684	0/0:202:202,0:202:7235:0:0:0,-60.8081,-651.057	0/1:313:262,51:262:9357:51:1802:-68.2355,0,-742.078	0/0:311:311,0:311:11128:0:0:0,-93.6203,-1001.36	0/0:193:193,0:193:6909:0:0:0,-58.0988,-621.562	0/1:314:264,50:264:9442:50:1796:-67.3989,0,-753.251	0/0:184:184,0:184:6615:0:0:0,-55.3895,-595.372	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.598	0/0:240:240,0:240:8611:0:0:0,-72.2472,-774.87	0/1:138:110,28:110:3931:28:1008:-49.486,0,-312.172	0/0:37:35,2:35:1260:2:72:0,-4.30139,-106.404	0/1:304:242,62:242:8671:62:2228:-109.271,0,-683.664	0/0:92:92,0:92:3299:0:0:0,-27.6948,-296.77	0/1:17:13,4:13:468:4:140:-7.82707,0,-37.3257	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:263:225,38:225:8050:38:1353:-42.8975,0,-642.462	0/0:287:285,2:285:10236:2:72:0,-79.5589,-914.066	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:322:322,0:322:11530:0:0:0,-96.9317,-1037.54	0/0:324:322,2:322:11537:2:72:0,-90.697,-1031.23	0/1:134:109,25:109:3912:25:896:-40.6177,0,-311.223	0/1:180:150,30:150:5336:30:1050:-40.6206,0,-424.807	0/0:272:272,0:272:9750:0:0:0,-81.8802,-877.353	0/0:163:158,5:158:5667:5:180:0,-32.5158,-493.557	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.305	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.265	0/0:170:170,0:170:6112:0:0:0,-51.1751,-549.273	0/1:66:58,8:58:2076:8:288:-6.39943,0,-166.909	0/0:207:207,0:207:7409:0:0:0,-62.3132,-665.907	0/1:176:149,27:149:5322:27:949:-32.7415,0,-420.607	0/0:287:287,0:287:10292:0:0:0,-86.3956,-924.401	0/0:310:309,1:309:11062:1:36:0,-89.721,-991.804	0/0:284:283,1:283:10139:1:36:0,-81.8942,-907.172	0/0:160:160,0:160:5740:0:0:0,-48.1648,-516.639	0/1:31:22,9:22:792:9:324:-20.1739,0,-61.8303	0/0:209:208,1:208:7457:1:36:0,-59.317,-667.536	0/0:164:164,0:164:5852:0:0:0,-49.3689,-525.101	0/0:290:289,1:289:10329:1:36:0,-83.7004,-925.897	0/1:210:175,35:175:6238:35:1250:-49.5863,0,-495.899	0/0:136:136,0:136:4871:0:0:0,-40.9401,-438.511	0/1:212:189,23:189:6755:23:813:-9.67075,0,-542.395	0/1:400:333,67:333:11906:67:2412:-96.9238,0,-948.336	0/1:80:65,15:65:2323:15:540:-24.8541,0,-183.636	0/0:168:168,0:168:6023:0:0:0,-50.573,-542.09	0/0:160:160,0:160:5743:0:0:0,-48.1648,-516.426	0/1:115:100,15:100:3584:15:540:-14.3135,0,-286.574	0/1:325:279,46:279:9982:46:1641:-50.1419,0,-795.258	0/1:227:182,45:182:6508:45:1597:-75.6839,0,-515.065	0/0:244:243,1:243:8685:1:21:0,-71.3514,-779.224	0/0:196:196,0:196:7035:0:0:0,-59.0019,-633.032
chr06	29709364	.	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chr06	29781378	.	G	A	22108.1	PASS	AB=0.484574;ABP=8.705;AC=48;AF=0.255319;AN=188;AO=1340;CIGAR=1X;DP=5524;DPB=5524;DPRA=0.989662;EPP=2895.44;EPPR=9016.89;GTI=1;LEN=1;MEANALT=1;MQM=59.9754;MQMR=59.9806;NS=94;NUMALT=1;ODDS=1.99421;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47804;QR=149594;RO=4179;RPL=2;RPP=2895.44;RPPR=9016.89;RPR=1338;RUN=1;SAF=1340;SAP=2912.78;SAR=0;SRF=4179;SRP=9077.59;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:15,20:15:540:20:705:-53.2367,0,-38.4005	0/1:33:19,14:19:680:14:487:-34.2259,0,-51.5952	0/1:103:52,51:52:1855:51:1805:-131.724,0,-136.223	0/0:96:95,0:95:3393:0:0:0,-28.5978,-305.224	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:63:35,28:35:1252:28:1004:-71.711,0,-94.0202	0/1:54:24,30:24:845:30:1068:-80.1759,0,-60.1115	0/1:44:18,26:18:644:26:932:-70.9535,0,-45.0381	0/1:70:35,35:35:1256:35:1255:-92.183,0,-92.2732	0/0:116:116,0:116:4152:0:0:0,-34.9195,-373.863	0/1:85:40,45:40:1440:45:1606:-119.242,0,-104.31	0/1:82:40,42:40:1436:42:1501:-110.68,0,-104.853	0/1:77:38,39:38:1356:39:1400:-103.12,0,-99.1612	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:39:30,9:30:1080:9:324:-17.7657,0,-85.7731	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:30:18,12:18:636:12:428:-29.8279,0,-48.5371	0/1:135:71,64:71:2518:64:2275:-164.371,0,-186.23	0/1:74:36,38:36:1292:38:1356:-100.064,0,-94.3075	0/0:80:79,0:79:2844:0:0:0,-23.7814,-255.837	0/1:53:31,22:31:1103:22:788:-55.2902,0,-83.6252	0/0:30:29,1:29:1044:1:36:0,-5.43262,-90.6765	0/1:57:36,21:36:1273:21:741:-49.8529,0,-97.7122	0/0:161:161,0:161:5744:0:0:0,-48.4658,-517.076	0/1:169:80,89:80:2853:89:3143:-232.22,0,-206.132	0/1:36:20,16:20:716:16:572:-40.9763,0,-53.9306	0/1:122:50,72:50:1796:72:2573:-195.092,0,-125.197	0/1:41:28,13:28:1004:13:460:-29.3931,0,-78.3336	0/1:62:31,31:31:1108:31:1101:-80.7354,0,-81.3667	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:168:84,84:84:3012:84:3024:-221.816,0,-220.738	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:63:25,38:25:888:38:1368:-104.456,0,-61.2741	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:38:23,15:23:824:15:540:-37.4974,0,-63.0442	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:90:54,36:54:1940:36:1288:-89.1309,0,-147.783	0/1:51:26,25:26:928:25:896:-65.6078,0,-68.4857	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:81:81,0:81:2885:0:0:0,-24.3834,-259.885	0/1:54:30,24:30:1080:24:845:-60.1115,0,-81.2576	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/1:54:36,18:36:1296:18:644:-42.035,0,-100.688	0/0:46:46,0:46:1633:0:0:0,-13.8474,-147.257	0/1:9:7,2:7:237:2:72:-4.12745,0,-18.9498	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/1:26:11,15:11:396:15:536:-40.748,0,-28.156	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/1:67:37,30:37:1328:30:1076:-76.9838,0,-99.6532	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:46:26,20:26:936:20:716:-50.9203,0,-70.7121	0/0:103:103,0:103:3677:0:0:0,-31.0061,-331.132	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:74:74,0:74:2649:0:0:0,-22.2762,-238.654	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.425	0/1:46:33,13:33:1184:13:464:-28.2501,0,-93.0209	0/1:24:7,17:7:252:17:612:-48.1887,0,-15.8042	0/0:93:92,1:92:3293:1:36:0,-24.3975,-292.989	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:44:43,1:43:1540:1:36:0,-9.64704,-135.295	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/0:136:136,0:136:4877:0:0:0,-40.9401,-437.976	0/1:42:16,26:16:576:26:927:-71.1047,0,-39.5317	0/0:73:73,0:73:2594:0:0:0,-21.9752,-233.704	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:54:53,0:53:1908:0:0:0,-15.9546,-171.638	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:117:115,0:115:4113:0:0:0,-34.6184,-369.993	0/1:49:32,17:32:1152:17:608:-40.3016,0,-89.2397	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:42:25,17:25:900:17:606:-42.2233,0,-68.6778	0/1:120:59,61:59:2108:61:2150:-157.642,0,-153.866	0/1:25:11,14:11:396:14:489:-36.814,0,-28.457	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/1:52:31,21:31:1101:21:756:-52.7137,0,-83.7448	0/1:118:55,63:55:1972:63:2264:-168.501,0,-142.233	0/1:58:25,33:25:880:33:1179:-88.9575,0,-62.046	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:97:97,0:97:3475:0:0:0,-29.1999,-312.961
chr06	29781492	.	AG	GG	37238.6	PASS	AB=0.529253;ABP=33.3742;AC=49;AF=0.260638;AN=188;AO=2183;CIGAR=1X1M;DP=7906;DPB=7906;DPRA=1.06564;EPP=4682.73;EPPR=12134.2;GTI=2;LEN=1;MEANALT=1.12963;MQM=59.9638;MQMR=59.9907;NS=94;NUMALT=1;ODDS=0.406842;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77678;QR=201648;RO=5706;RPL=2176;RPP=4682.73;RPPR=12142.8;RPR=7;RUN=1;SAF=0;SAP=4743.33;SAR=2183;SRF=1;SRP=12384.7;SRR=5705;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:22,15:22:760:15:536:-37.4367,0,-57.5782	0/1:120:50,70:50:1752:70:2481:-187.418,0,-121.836	0/1:85:37,47:37:1293:47:1664:-124.399,0,-91.0233	0/0:174:173,0:173:6062:0:0:0,-52.0782,-545.327	0/0:32:32,0:32:1137:0:0:0,-9.63296,-102.638	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.365	0/0:117:116,0:116:4101:0:0:0,-34.9195,-368.916	0/1:113:60,53:60:2134:53:1860:-133.661,0,-158.311	0/1:147:79,68:79:2796:68:2410:-172.876,0,-207	0/1:81:38,38:38:1346:38:1347:-98.292,0,-98.2018	0/1:65:32,33:32:1128:33:1167:-85.7695,0,-82.2591	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.168	0/1:59:29,29:29:1040:29:1022:-74.578,0,-76.2017	0/1:62:27,35:27:959:35:1256:-94.6814,0,-67.9612	0/1:65:27,38:27:968:38:1351:-102.323,0,-67.8706	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.726	0/1:66:37,29:37:1312:29:1036:-73.6859,0,-98.5123	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.644	0/1:36:11,25:11:396:25:881:-68.7688,0,-25.1457	0/1:355:152,203:152:5321:203:7249:-545.598,0,-372.16	0/1:134:53,81:53:1859:81:2900:-220.898,0,-127.248	0/0:84:84,0:84:2946:0:0:0,-25.2865,-265.372	0/1:62:28,34:28:1004:34:1207:-90.2714,0,-72.0122	0/0:122:114,8:114:4034:8:283:0,-10.9134,-337.436	0/1:47:17,30:17:608:30:1063:-81.8324,0,-40.9036	0/0:253:252,0:252:8891:0:0:0,-75.8596,-799.822	0/1:155:66,88:66:2345:88:3139:-236.096,0,-164.668	0/1:35:20,15:20:720:15:521:-36.6803,0,-54.5927	0/1:231:113,118:113:4016:118:4215:-309.985,0,-292.093	0/1:99:51,48:51:1799:48:1712:-124.564,0,-132.387	0/1:130:60,70:60:2152:70:2495:-185.666,0,-154.814	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:195:87,108:87:3081:108:3828:-286.018,0,-218.817	0/0:170:170,0:170:5939:0:0:0,-51.1751,-534.625	0/1:42:23,19:23:808:19:663:-47.3502,0,-60.3958	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:148:71,77:71:2482:77:2763:-204.359,0,-179.077	0/0:28:28,0:28:1006:0:0:0,-8.42884,-90.8562	0/1:103:44,57:44:1573:57:2036:-152.821,0,-111.17	0/1:69:36,33:36:1282:33:1172:-85.0164,0,-94.9123	0/0:59:59,0:59:2090:0:0:0,-17.7608,-188.369	0/0:59:59,0:59:2076:0:0:0,-17.7608,-187.108	0/1:90:39,51:39:1371:51:1811:-136.178,0,-96.5942	0/0:138:138,0:138:4864:0:0:0,-41.5421,-437.916	0/0:97:97,0:97:3419:0:0:0,-29.1999,-307.92	0/1:154:65,88:65:2305:88:3143:-236.65,0,-161.294	0/0:180:180,0:180:6367:0:0:0,-54.1854,-573.12	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:92:92,0:92:3269:0:0:0,-27.6948,-294.427	0/1:46:29,17:29:1014:17:608:-41.2046,0,-77.7217	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:108:46,62:46:1593:62:2220:-167.553,0,-111.142	0/0:41:41,0:41:1428:0:0:0,-12.3422,-128.813	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:99:53,46:53:1886:46:1639:-117.996,0,-140.215	0/0:122:122,0:122:4349:0:0:0,-36.7257,-391.585	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:221:220,0:220:7732:0:0:0,-66.2266,-695.563	0/0:146:143,3:143:5091:3:108:0,-33.8752,-448.259	0/1:73:43,30:43:1511:30:1072:-74.8173,0,-114.305	0/1:68:32,36:32:1135:36:1278:-94.8475,0,-81.9877	0/0:156:150,6:150:5307:6:208:0,-27.9016,-458.709	0/0:69:68,1:68:2444:1:36:0,-17.1728,-216.614	0/0:21:20,1:20:720:1:36:0,-2.72335,-61.5305	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.733	0/0:63:63,0:63:2266:0:0:0,-18.9649,-204.202	0/1:10:3,7:3:108:7:243:-19.1972,0,-7.06487	0/0:92:92,0:92:3224:0:0:0,-27.6948,-290.381	0/1:50:30,18:30:1063:18:648:-43.8426,0,-81.1718	0/0:79:79,0:79:2788:0:0:0,-23.7814,-251.16	0/0:138:138,0:138:4889:0:0:0,-41.5421,-440.164	0/0:58:58,0:58:2008:0:0:0,-17.4597,-180.987	0/0:97:97,0:97:3396:0:0:0,-29.1999,-305.855	0/1:18:7,11:7:250:11:387:-29.7474,0,-17.4281	0/0:69:69,0:69:2433:0:0:0,-20.7711,-219.223	0/0:56:56,0:56:1970:0:0:0,-16.8577,-177.572	0/0:114:114,0:114:4007:0:0:0,-34.3174,-360.818	0/1:95:44,51:44:1562:51:1812:-134.763,0,-112.272	0/0:39:39,0:39:1382:0:0:0,-11.7402,-124.677	0/1:119:65,54:65:2279:54:1905:-135.903,0,-169.545	0/1:149:69,80:69:2452:80:2842:-211.165,0,-176.081	0/1:34:16,18:16:565:18:648:-48.4169,0,-40.9445	0/0:83:83,0:83:2915:0:0:0,-24.9855,-262.583	0/0:64:63,1:63:2245:1:36:0,-15.6676,-198.714	0/1:34:20,14:20:718:14:491:-34.2861,0,-54.7133	0/1:77:41,36:41:1463:36:1288:-93.0443,0,-108.785	0/1:94:26,68:26:934:68:2422:-189.934,0,-56.0824	0/0:99:99,0:99:3495:0:0:0,-29.802,-314.761	0/0:94:94,0:94:3318:0:0:0,-28.2968,-298.838
chr06	29969236	.	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chr06	29969266	.	C	T	114995	PASS	AB=0.518612;ABP=17.3174;AC=140;AF=0.744681;AN=188;AO=8468;CIGAR=1X;DP=10770;DPB=10770;DPRA=0;EPP=17899.3;EPPR=4980.04;GTI=2;LEN=1;MEANALT=1.02128;MQM=27.3968;MQMR=49.8587;NS=94;NUMALT=1;ODDS=0.857175;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=303196;QR=81964;RO=2300;RPL=8411;RPP=17899.3;RPPR=4980.04;RPR=57;RUN=1;SAF=8468;SAP=18391;SAR=0;SRF=2300;SRP=4997.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:23,21:23:828:21:748:-35.1861,0,-61.0253	0/1:184:93,91:93:3306:91:3251:-154.423,0,-238.803	0/1:127:63,64:63:2260:64:2300:-109.977,0,-163.818	1/1:265:0,265:0:0:265:9515:-651.521,-79.773,0	1/1:130:0,130:0:0:130:4663:-299.953,-39.1339,0	1/1:130:0,130:0:0:130:4660:-300.033,-39.1339,0	1/1:189:1,188:1:36:188:6720:-457.26,-53.3082,0	0/1:310:146,164:146:5207:164:5875:-284.092,0,-372.834	0/1:109:76,33:76:2720:33:1188:-43.1845,0,-209.853	0/1:132:63,68:63:2242:68:2444:-127.043,0,-161.53	0/1:29:16,13:16:561:13:468:-23.4778,0,-41.9373	1/1:64:0,64:0:0:64:2296:-148.238,-19.2659,0	0/1:44:21,23:21:739:23:811:-40.0038,0,-53.3262	0/1:46:25,21:25:879:21:748:-34.6671,0,-65.0524	0/1:45:18,27:18:648:27:972:-52.8037,0,-44.854	1/1:46:0,46:0:0:46:1644:-105.104,-13.8474,0	0/1:48:18,30:18:644:30:1062:-54.5083,0,-43.6012	1/1:58:0,58:0:0:58:2075:-133.66,-17.4597,0	0/1:16:8,8:8:288:8:288:-13.8621,0,-21.0806	0/1:232:107,125:107:3825:125:4484:-236.577,0,-272.692	0/1:202:105,97:105:3728:97:3468:-164.478,0,-272.719	1/1:189:0,189:0:0:189:6747:-487.591,-56.8947,0	0/1:38:20,18:20:716:18:640:-32.8525,0,-53.1145	1/1:128:5,123:5:180:123:4411:-267.738,-22.0695,0	0/1:59:37,22:37:1315:22:792:-33.1575,0,-100.3	1/1:412:0,412:0:0:412:14765:-1063.31,-124.024,0	0/1:143:82,61:82:2905:61:2192:-97.6312,0,-216.763	0/1:22:7,15:7:252:15:540:-28.9273,0,-16.2814	0/1:259:130,129:130:4668:129:4621:-257.399,0,-341.395	0/1:349:147,202:147:5264:202:7215:-359.896,0,-365.286	0/1:232:103,129:103:3678:129:4607:-244.948,0,-258.976	1/1:5:0,5:0:0:5:180:-11.5126,-1.50515,0	1/1:24:0,24:0:0:24:852:-55.3725,-7.22472,0	1/1:6:0,6:0:0:6:216:-14.0729,-1.80618,0	0/1:11:4,7:4:144:7:252:-13.0644,0,-9.96004	1/1:6:0,6:0:0:6:212:-14.0217,-1.80618,0	0/1:134:56,78:56:1999:78:2804:-162.844,0,-139.03	1/1:302:0,302:0:0:302:10835:-696.217,-90.9111,0	0/1:35:16,19:16:572:19:680:-33.4232,0,-40.5639	1/1:4:0,4:0:0:4:144:-9.46721,-1.20412,0	0/1:192:86,106:86:3072:106:3795:-186.518,0,-216.862	1/1:27:0,27:0:0:27:972:-62.1795,-8.12781,0	0/1:169:76,93:76:2695:93:3327:-163.204,0,-190.103	0/1:30:7,23:7:228:23:816:-47.0734,0,-11.5695	1/1:63:0,63:0:0:63:2233:-155.144,-18.9649,0	1/1:106:1,105:1:36:105:3725:-265.652,-28.4065,0	0/1:201:103,98:103:3696:98:3508:-165.337,0,-269.956	1/1:205:0,205:0:0:205:7351:-503.204,-61.7112,0	1/1:142:0,142:0:0:142:5099:-347.187,-42.7463,0	0/1:219:109,110:109:3911:110:3924:-202.91,0,-283.398	1/1:200:0,200:0:0:200:7172:-518.501,-60.206,0	0/1:10:6,4:6:216:4:135:-6.84566,0,-16.6898	1/1:153:0,153:0:0:153:5450:-350.58,-46.0576,0	0/1:86:42,44:42:1483:44:1559:-84.6624,0,-107.574	0/1:27:19,8:19:676:8:288:-10.5507,0,-52.543	0/1:146:73,73:73:2594:73:2616:-124.146,0,-187.861	1/1:22:0,22:0:0:22:788:-53.4753,-6.62266,0	0/1:7:3,4:3:108:4:144:-8.47895,0,-7.93525	1/1:35:0,35:0:0:35:1247:-90.9622,-10.5361,0	0/1:106:57,49:57:2023:49:1748:-81.8131,0,-148.441	1/1:127:1,126:1:36:126:4520:-306.617,-34.6443,0	0/1:12:7,5:7:244:5:180:-8.81087,0,-18.6216	1/1:244:0,244:0:0:244:8754:-633.145,-73.4513,0	1/1:250:1,249:1:36:249:8909:-607.556,-71.6787,0	0/1:91:46,45:46:1636:45:1599:-76.2284,0,-118.638	0/1:107:64,43:64:2275:43:1535:-74.6261,0,-171.583	1/1:221:1,220:1:36:220:7869:-534.923,-62.9411,0	1/1:135:1,134:1:36:134:4804:-326.542,-37.0526,0	1/1:16:0,16:0:0:16:576:-37.1827,-4.81648,0	1/1:85:0,85:0:0:85:3047:-195.571,-25.5876,0	1/1:104:0,104:0:0:104:3721:-265.689,-31.3071,0	0/1:19:4,15:4:144:15:536:-31.2928,0,-7.36645	1/1:200:1,199:1:36:199:7152:-455.743,-56.623,0	0/1:61:24,37:24:856:37:1328:-67.1287,0,-58.1421	1/1:302:0,301:0:0:301:10784:-692.201,-90.61,0	1/1:177:0,177:0:0:177:6346:-433.504,-53.2823,0	1/1:167:0,167:0:0:167:5983:-384.588,-50.272,0	1/1:144:0,144:0:0:144:5151:-331.724,-43.3483,0	0/1:8:6,2:6:212:2:72:-2.4533,0,-16.1557	1/1:151:0,151:0:0:151:5410:-348.478,-45.4555,0	1/1:130:0,130:0:0:130:4659:-300.446,-39.1339,0	1/1:257:0,257:0:0:257:9207:-628.183,-77.3647,0	0/1:113:58,55:58:2072:55:1972:-101.232,0,-150.852	1/1:50:0,50:0:0:50:1788:-121.625,-15.0515,0	0/1:65:27,38:27:941:38:1360:-73.5779,0,-65.1205	0/1:103:34,69:34:1194:69:2461:-138.784,0,-76.0599	0/1:36:15,21:15:540:21:743:-37.5359,0,-37.6349	1/1:68:0,68:0:0:68:2427:-156.898,-20.47,0	1/1:50:0,50:0:0:50:1800:-115.708,-15.0515,0	0/1:23:8,15:8:270:15:540:-27.784,0,-17.5911	0/1:36:13,23:13:468:23:828:-42.4653,0,-31.3963	0/1:38:17,21:17:590:21:756:-40.5487,0,-41.7549	1/1:150:0,150:0:0:150:5385:-367.112,-45.1545,0	1/1:76:0,76:0:0:76:2712:-186.112,-22.8783,0
chr06	29969280	.	T	G	109955	PASS	AB=0.516942;ABP=14.7828;AC=140;AF=0.744681;AN=188;AO=8361;CIGAR=1X;DP=10658;DPB=10658;DPRA=0;EPP=18158.7;EPPR=4969.17;GTI=3;LEN=1;MEANALT=1.07447;MQM=27.3943;MQMR=49.801;NS=94;NUMALT=1;ODDS=1.2099;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=296619;QR=80170;RO=2287;RPL=8361;RPP=18158.7;RPPR=4969.17;RPR=0;RUN=1;SAF=8361;SAP=18158.7;SAR=0;SRF=2287;SRP=4969.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:24,20:24:830:20:707:-32.8248,0,-61.2392	0/1:185:95,88:95:3366:88:3147:-147.391,0,-244.273	0/1:128:65,63:65:2277:63:2248:-106.551,0,-165.068	1/1:266:0,266:0:0:266:9449:-652.041,-80.074,0	1/1:127:0,127:0:0:127:4523:-292.332,-38.2308,0	1/1:128:0,128:0:0:128:4561:-294.555,-38.5318,0	1/1:190:1,189:1:36:189:6704:-458.746,-53.6092,0	0/1:311:147,163:147:5183:163:5768:-279.057,0,-369.985	0/1:106:75,31:75:2626:31:1112:-39.4314,0,-202.647	0/1:135:64,70:64:2266:70:2496:-131.556,0,-162.724	0/1:29:16,13:16:563:13:464:-23.4038,0,-42.1247	1/1:64:0,64:0:0:64:2275:-147.896,-19.2659,0	0/1:42:21,21:21:748:21:744:-35.8207,0,-54.7292	0/1:43:22,21:22:768:21:744:-35.5196,0,-56.1352	0/1:45:18,27:18:624:27:940:-51.8986,0,-42.7588	1/1:47:0,47:0:0:47:1627:-106.634,-14.1484,0	0/1:48:19,29:19:671:29:1028:-52.387,0,-46.0303	1/1:58:0,58:0:0:58:2039:-132.797,-17.4597,0	0/1:16:8,8:8:275:8:280:-13.7602,0,-20.0498	0/1:234:107,127:107:3756:127:4501:-238.931,0,-265.126	0/1:202:106,96:106:3735:96:3396:-160.256,0,-273.561	1/1:187:0,187:0:0:187:6640:-480.797,-56.2926,0	0/1:36:19,17:19:671:17:604:-30.9919,0,-49.6907	1/1:128:5,123:5:180:123:4396:-267.318,-22.0695,0	0/1:63:37,26:37:1308:26:932:-41.1143,0,-98.4911	1/1:408:0,408:0:0:408:14474:-1048.32,-122.82,0	0/1:141:81,59:81:2833:59:2108:-93.4399,0,-210.77	0/1:22:7,15:7:233:15:521:-28.3533,0,-14.5747	0/1:262:133,129:133:4653:129:4570:-255.415,0,-338.979	0/1:345:146,199:146:5144:199:7061:-352.664,0,-355.509	0/1:230:106,124:106:3682:124:4347:-230.906,0,-260.209	1/1:5:0,5:0:0:5:176:-11.4613,-1.50515,0	1/1:23:0,23:0:0:23:820:-53.1202,-6.92369,0	1/1:6:0,6:0:0:6:212:-14.0217,-1.80618,0	0/1:10:3,7:3:108:7:252:-13.3654,0,-7.02224	1/1:6:0,6:0:0:6:216:-14.0729,-1.80618,0	0/1:136:55,81:55:1910:81:2847:-167.87,0,-130.525	1/1:297:0,297:0:0:297:10565:-682.773,-89.4059,0	0/1:36:16,20:16:555:20:695:-35.0815,0,-38.7457	1/1:4:0,4:0:0:4:144:-9.46721,-1.20412,0	0/1:190:85,105:85:3001:105:3689:-183.274,0,-211.159	1/1:26:0,26:0:0:26:930:-59.8155,-7.82678,0	0/1:168:75,93:75:2650:93:3305:-162.974,0,-186.261	0/1:31:6,25:6:207:25:888:-51.4868,0,-9.55074	1/1:61:0,61:0:0:61:2106:-149.216,-18.3628,0	1/1:106:1,105:1:36:105:3715:-266.563,-28.4065,0	0/1:199:101,98:101:3576:98:3482:-165.446,0,-259.875	1/1:205:0,205:0:0:205:7267:-500.946,-61.7112,0	1/1:141:0,141:0:0:141:5038:-344.313,-42.4452,0	0/1:211:106,105:106:3754:105:3697:-192.044,0,-272.963	1/1:199:0,199:0:0:199:7039:-512.342,-59.905,0	0/1:9:6,3:6:216:3:108:-4.9521,0,-16.9908	1/1:149:0,149:0:0:149:5331:-342.427,-44.8535,0	0/1:87:42,45:42:1451:45:1600:-87.2122,0,-104.405	0/1:27:19,8:19:663:8:288:-10.5507,0,-51.3902	0/1:143:72,71:72:2481:71:2508:-119.304,0,-178.717	1/1:21:0,21:0:0:21:744:-51.0023,-6.32163,0	0/1:7:3,4:3:104:4:144:-8.47895,0,-7.56574	1/1:34:0,34:0:0:34:1220:-88.8635,-10.235,0	0/1:101:55,46:55:1947:46:1644:-75.7123,0,-142.941	1/1:124:1,123:1:36:123:4392:-298.953,-33.7412,0	0/1:10:5,5:5:152:5:180:-9.41293,0,-10.9419	1/1:239:0,239:0:0:239:8474:-618.006,-71.9462,0	1/1:242:1,241:1:36:241:8587:-586.925,-69.2705,0	0/1:92:46,45:46:1584:45:1607:-76.1487,0,-113.926	0/1:99:61,38:61:2118:38:1356:-64.6856,0,-159.945	1/1:217:1,216:1:36:216:7650:-524.017,-61.737,0	1/1:132:1,131:1:36:131:4657:-317.828,-36.1495,0	1/1:16:0,16:0:0:16:559:-36.8557,-4.81648,0	1/1:84:0,84:0:0:84:2956:-192.063,-25.2865,0	1/1:100:0,100:0:0:100:3571:-256.317,-30.103,0	0/1:19:4,15:4:135:15:519:-30.8823,0,-6.54486	1/1:191:1,190:1:36:190:6724:-432.263,-53.9137,0	0/1:61:23,38:23:812:38:1356:-69.3308,0,-54.368	1/1:305:0,302:0:0:302:10717:-692.992,-90.9111,0	1/1:177:0,177:0:0:177:6265:-430.167,-53.2823,0	1/1:161:0,161:0:0:161:5716:-369.661,-48.4658,0	1/1:140:0,139:0:0:139:4965:-319.723,-41.8432,0	0/1:8:6,2:6:199:2:72:-2.4533,0,-14.9869	1/1:147:0,147:0:0:147:5218:-338.174,-44.2514,0	1/1:127:0,127:0:0:127:4539:-292.533,-38.2308,0	1/1:254:0,254:0:0:254:9000:-618.893,-76.4616,0	0/1:114:58,56:58:2052:56:1983:-102.838,0,-148.763	1/1:51:0,51:0:0:51:1811:-123.823,-15.3525,0	0/1:63:26,37:26:880:37:1303:-71.2814,0,-60.3262	0/1:102:35,67:35:1203:67:2371:-134.113,0,-77.303	0/1:34:15,19:15:517:19:676:-33.6737,0,-36.1848	1/1:68:0,68:0:0:68:2373:-155.719,-20.47,0	1/1:50:0,50:0:0:50:1745:-115.012,-15.0515,0	0/1:22:8,14:8:276:14:500:-25.65,0,-18.4311	0/1:35:11,24:11:379:24:843:-44.726,0,-23.746	0/1:41:17,24:17:596:24:852:-46.8122,0,-41.3879	1/1:151:0,151:0:0:151:5354:-369.215,-45.4555,0	1/1:74:0,74:0:0:74:2652:-181.872,-22.2762,0
chr06	29969281	.	CATTC	CATTT,TATTT	161452	PASS	AB=0.515272,0.481172;ABP=12.6938,17.7291;AC=140,48;AF=0.744681,0.255319;AN=188;AO=8412,2314;CIGAR=4M1X,1X3M1X;DP=10772;DPB=10774;DPRA=0,0.98886;EPP=18269.4,5027.8;EPPR=20.3821;GTI=2;LEN=1,5;MEANALT=1.95745,2.2931;MQM=27.3944,49.6884;MQMR=42.75;NS=94;NUMALT=2;ODDS=0.236629;PAIRED=0,0;PAIREDR=0;PAO=1.5,0;PQA=50.5,0;PQR=50.5;PRO=1.5;QA=298506,80593;QR=278;RO=8;RPL=8412,2314;RPP=18269.4,5027.8;RPPR=20.3821;RPR=0,0;RUN=1,1;SAF=8412,2314;SAP=18269.4,5027.8;SAR=0,0;SRF=8;SRP=20.3821;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,20,24:0:0:20,24:684,829:-106.36,-67.2266,-61.206,-39.4261,0,-32.2014	1/2:184:0,90,94:0:0:90,94:3196,3326:-447.148,-267.832,-240.739,-179.618,0,-151.321	1/2:128:0,63,65:0:0:63,65:2260,2288:-311.058,-185.091,-166.126,-126.269,0,-106.702	1/1:265:0,265,0:0:0:265,0:9432,0:-649.24,-79.773,0,-649.24,-79.773,-649.24	1/1:128:0,128,0:0:0:128,0:4575,0:-294.836,-38.5318,0,-294.836,-38.5318,-294.836	1/1:131:0,131,0:0:0:131,0:4652,0:-300.88,-39.4349,0,-300.88,-39.4349,-300.88	1/1:190:0,188,1:0:0:188,1:6681,36:-459.616,-56.5936,0,-456.688,-53.5965,-456.387	1/2:307:0,160,146:0:0:160,146:5726,5074:-729.875,-410.217,-362.052,-319.631,0,-275.68	1/2:110:0,34,76:0:0:34,76:1180,2628:-278.99,-212.002,-201.767,-67.269,0,-44.3907	1/2:138:0,71,67:0:0:71,67:2536,2354:-343.266,-191.042,-169.669,-152.536,0,-132.367	1/2:29:0,13,16:0:0:13,16:464,553:-73.0698,-45.1418,-41.2284,-28.2328,0,-23.4163	1/1:64:0,64,0:0:0:64,0:2291,0:-148.097,-19.2659,0,-148.097,-19.2659,-148.097	1/2:42:0,21,21:0:0:21,21:748,745:-102.676,-60.7874,-54.4658,-42.1928,0,-35.8712	1/2:44:0,21,23:0:0:21,23:744,789:-105.841,-63.9949,-57.6732,-42.1423,0,-35.2186	1/2:45:0,26,18:0:0:26,18:919,631:-107.053,-51.3005,-43.4737,-55.8471,0,-50.4286	1/1:46:0,45,0:0:0:45,0:1612,0:-103.307,-13.5464,0,-103.307,-13.5464,-103.307	1/2:49:0,30,19:0:0:30,19:1058,655:-112.923,-53.3558,-44.3249,-59.8764,0,-54.1568	1/1:59:0,59,0:0:0:59,0:2100,0:-135.892,-17.7608,0,-135.892,-17.7608,-135.892	1/2:16:0,8,8:0:0:8,8:288,279:-38.8136,-22.8442,-20.436,-16.2703,0,-13.8621	1/2:238:0,128,110:0:0:128,110:4530,3832:-581.817,-309.331,-270.799,-272.796,0,-239.683	1/2:202:0,97,105:0:0:97,105:3453,3642:-489.552,-294.607,-265.407,-195.244,0,-163.636	1/1:190:0,186,0:0:0:186,0:6595,0:-478.215,-55.9916,0,-478.215,-55.9916,-478.215	1/2:38:0,18,20:0:0:18,20:636,688:-94.5357,-56.0416,-50.6231,-38.7993,0,-32.7787	1/1:130:0,124,5:0:0:124,5:4362,170:-283.759,-37.3277,0,-270.033,-23.5226,-268.528	1/2:60:0,24,36:0:0:24,36:843,1261:-150.087,-102.423,-95.1979,-47.956,0,-37.1189	1/1:409:1,408,0:1:34:408,0:14506,0:-1044.27,-119.785,0,-1044.57,-122.82,-1047.27	1/2:142:0,61,81:0:0:61,81:2168,2842:-351.654,-229.935,-211.573,-122.014,0,-97.6304	1/2:22:1,14,7:1:35:14,7:500,246:-44.8597,-17.2485,-15.7221,-25.2079,0,-25.7961	1/2:262:0,129,133:0:0:129,133:4579,4654:-672.371,-377.951,-339.118,-294.738,0,-254.701	1/2:346:0,197,147:0:0:197,147:7013,5152:-809.295,-416,-356.697,-393.385,0,-349.134	1/2:243:0,131,108:0:0:131,108:4637,3694:-578.439,-298.178,-258.743,-280.337,0,-247.825	1/1:5:0,4,0:0:0:4,0:144,0:-9.23373,-1.20412,0,-9.23373,-1.20412,-9.23373	1/1:24:0,24,0:0:0:24,0:856,0:-55.423,-7.22472,0,-55.423,-7.22472,-55.423	1/1:6:0,6,0:0:0:6,0:216,0:-14.0729,-1.80618,0,-14.0729,-1.80618,-14.0729	1/2:12:0,8,4:0:0:8,4:288,142:-27.8208,-11.8713,-9.4631,-16.2703,0,-15.0662	1/1:6:0,6,0:0:0:6,0:208,0:-13.9706,-1.80618,0,-13.9706,-1.80618,-13.9706	1/2:134:0,77,57:0:0:77,57:2705,1976:-335.562,-160.257,-137.078,-175.626,0,-158.467	1/1:299:0,297,1:0:0:297,1:10500,36:-680.833,-89.4059,0,-679.083,-87.656,-678.782	1/2:37:1,21,15:1:35:21,15:752,531:-81.4172,-39.7851,-36.3113,-39.0457,0,-37.3823	1/1:3:0,3,0:0:0:3,0:108,0:-7.16438,-0.90309,0,-7.16438,-0.90309,-7.16438	1/2:193:0,107,86:0:0:107,86:3802,3021:-457.937,-244.413,-212.202,-213.831,0,-187.943	1/1:26:0,25,0:0:0:25,0:892,0:-57.4981,-7.52575,0,-57.4981,-7.52575,-57.4981	1/2:167:0,93,74:0:0:93,74:3284,2602:-394.458,-209.964,-181.969,-184.8,0,-162.524	1/2:32:0,25,7:0:0:25,7:887,233:-71.882,-18.9516,-11.4258,-53.2464,0,-51.1391	1/1:61:2,59,0:2:71:59,0:2088,0:-137.6,-11.8694,0,-138.202,-17.7608,-143.754	1/1:106:0,103,1:0:0:103,1:3655,30:-266.461,-31.0061,0,-264.553,-29.092,-264.252	1/2:206:0,101,105:0:0:101,105:3594,3656:-497.208,-295.592,-265.188,-201.916,0,-170.308	1/1:207:0,206,0:0:0:206,0:7319,0:-503.987,-62.0122,0,-503.987,-62.0122,-503.987	1/1:143:0,142,0:0:0:142,0:5001,0:-344.084,-42.7463,0,-344.084,-42.7463,-344.084	1/2:219:0,108,109:0:0:108,109:3809,3804:-537.834,-307.55,-275.039,-230.327,0,-197.515	1/1:201:1,199,0:1:36:199,0:7076,0:-510.041,-56.9924,0,-510.342,-59.905,-513.194	1/2:10:0,4,6:0:0:4,6:135,216:-26.2427,-17.8939,-16.6898,-8.65184,0,-6.84566	1/1:148:0,148,0:0:0:148,0:5264,0:-339.403,-44.5524,0,-339.403,-44.5524,-339.403	1/2:87:0,44,43:0:0:44,43:1560,1484:-217.681,-120.649,-107.404,-97.3437,0,-84.3994	1/2:27:0,8,19:0:0:8,19:288,656:-69.333,-53.3445,-50.9363,-16.2703,0,-10.5507	1/2:141:0,71,69:0:0:71,69:2506,2393:-333.739,-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chr06	30390439	.	T	G	136847	PASS	AB=0.487998;ABP=8.69171;AC=140;AF=0.744681;AN=188;AO=6666;CIGAR=1X;DP=9003;DPB=9003;DPRA=0;EPP=14478;EPPR=5066.88;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.8615;MQMR=59.9503;NS=94;NUMALT=1;ODDS=2.01617;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235011;QR=82877;RO=2332;RPL=6666;RPP=14478;RPPR=5066.88;RPR=0;RUN=1;SAF=6666;SAP=14478;SAR=0;SRF=2332;SRP=5066.88;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:25,27:25:892:27:951:-70.2497,0,-64.9461	0/1:71:38,33:38:1347:33:1138:-81.3461,0,-100.156	0/1:182:89,93:89:3149:93:3271:-239.636,0,-228.845	1/1:230:0,230:0:0:230:8106:-729.553,-69.2369,0	1/1:67:0,67:0:0:67:2388:-215.178,-20.169,0	1/1:43:0,43:0:0:43:1525:-137.541,-12.9443,0	1/1:97:0,97:0:0:97:3431:-308.215,-29.1999,0	0/1:240:134,106:134:4763:106:3708:-261.659,0,-356.573	0/1:112:57,55:57:2031:55:1941:-140.691,0,-148.918	0/1:69:30,38:30:1068:38:1360:-101.871,0,-75.6023	0/1:73:36,37:36:1255:37:1307:-95.9555,0,-91.2762	1/1:102:0,102:0:0:102:3502:-315.39,-30.7051,0	0/1:75:36,39:36:1284:39:1353:-99.4785,0,-93.2862	0/1:69:32,37:32:1144:37:1267:-93.5548,0,-82.4984	0/1:80:47,33:47:1656:33:1167:-81.164,0,-125.242	1/1:60:0,60:0:0:60:2104:-189.614,-18.0618,0	0/1:50:29,21:29:1031:21:739:-51.7809,0,-78.0511	1/1:41:0,41:0:0:41:1421:-128.179,-12.3422,0	0/1:22:9,13:9:315:13:464:-35.4748,0,-22.0646	0/1:228:119,109:119:4251:109:3844:-277.487,0,-314.04	0/1:139:65,74:65:2320:74:2643:-196.265,0,-167.217	1/1:83:0,83:0:0:83:2881:-259.524,-24.9855,0	0/1:89:45,42:45:1607:42:1474:-106.404,0,-118.37	0/1:60:7,53:7:248:53:1876:-150.28,0,-4.60239	0/1:90:47,43:47:1670:43:1510:-109.099,0,-123.493	1/1:264:0,264:0:0:264:9350:-841.47,-79.4719,0	0/1:288:145,143:145:5173:143:5021:-365.341,0,-379.014	0/1:22:11,11:11:387:11:396:-29.3601,0,-28.5433	0/1:323:164,159:164:5801:159:5594:-406.118,0,-424.914	0/1:112:52,60:52:1872:60:2132:-158.423,0,-135.044	0/1:63:34,29:34:1216:29:1036:-74.589,0,-90.7817	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:45:0,45:0:0:45:1591:-143.477,-13.5464,0	1/1:8:0,8:0:0:8:271:-24.7194,-2.40824,0	0/1:7:6,1:6:203:1:36:-1.49107,0,-16.494	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:215:115,100:115:4067:100:3507:-251.122,0,-301.469	1/1:135:1,134:1:36:134:4756:-424.55,-37.0408,0	0/1:60:37,23:37:1307:23:785:-52.9015,0,-99.8689	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:125:77,48:77:2718:48:1695:-115.206,0,-207.233	1/1:33:0,33:0:0:33:1166:-105.245,-9.93399,0	0/1:189:106,83:106:3783:83:2936:-207.579,0,-283.774	0/1:68:33,35:33:1146:35:1229:-90.4334,0,-82.9742	1/1:49:0,49:0:0:49:1732:-156.163,-14.7505,0	1/1:109:0,109:0:0:109:3825:-344.292,-32.8123,0	0/1:112:45,67:45:1603:67:2379:-180.652,0,-110.844	1/1:177:0,177:0:0:177:6277:-565.018,-53.2823,0	1/1:96:0,96:0:0:96:3380:-304.091,-28.8989,0	0/1:139:90,49:90:3212:49:1746:-115.581,0,-247.458	1/1:112:0,112:0:0:112:3911:-352.175,-33.7154,0	0/1:5:3,2:3:99:2:63:-4.478,0,-7.73143	1/1:138:0,138:0:0:138:4861:-437.645,-41.5421,0	0/1:105:56,49:56:1988:49:1742:-125.455,0,-147.584	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:144:60,84:60:2130:84:2952:-222.562,0,-148.619	1/1:14:0,14:0:0:14:491:-44.5188,-4.21442,0	0/1:20:10,10:10:356:10:360:-26.7237,0,-26.3606	1/1:20:0,20:0:0:20:696:-62.9585,-6.0206,0	0/1:138:64,74:64:2287:74:2625:-194.954,0,-164.549	1/1:116:0,116:0:0:116:4084:-367.742,-34.9195,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:168:0,168:0:0:168:5987:-538.936,-50.573,0	1/1:186:2,183:2:72:183:6469:-575.465,-49.2137,0	0/1:57:28,29:28:1000:29:1007:-73.7785,0,-73.1567	0/1:97:44,52:44:1576:52:1807:-133.638,0,-112.873	1/1:107:0,107:0:0:107:3764:-338.958,-32.2102,0	1/1:215:5,210:5:180:210:7416:-649.986,-48.1694,0	1/1:47:0,47:0:0:47:1653:-149.049,-14.1484,0	1/1:84:0,84:0:0:84:2943:-265.016,-25.2865,0	1/1:50:0,50:0:0:50:1744:-157.237,-15.0515,0	0/1:21:4,17:4:144:17:608:-48.7304,0,-6.99199	1/1:123:0,123:0:0:123:4337:-389.562,-37.0267,0	0/1:69:35,34:35:1252:34:1191:-86.7205,0,-92.214	1/1:100:1,99:1:36:99:3521:-313.497,-26.5047,0	1/1:180:0,180:0:0:180:6412:-577.17,-54.1854,0	1/1:123:0,123:0:0:123:4338:-390.597,-37.0267,0	1/1:108:2,106:2:72:106:3775:-333.114,-25.6745,0	0/1:8:2,6:2:72:6:216:-17.3807,0,-4.42848	1/1:110:0,110:0:0:110:3871:-348.585,-33.1133,0	1/1:145:0,145:0:0:145:5114:-460.401,-43.6494,0	1/1:131:0,131:0:0:131:4627:-416.219,-39.4349,0	0/1:64:38,26:38:1356:26:915:-63.3996,0,-103.075	1/1:66:0,66:0:0:66:2306:-207.796,-19.868,0	0/1:42:22,20:22:784:20:707:-51.3113,0,-58.2407	0/1:121:68,53:68:2425:53:1865:-131.703,0,-182.043	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:68:0,68:0:0:68:2367:-213.287,-20.47,0	1/1:89:0,89:0:0:89:3148:-283.546,-26.7917,0	0/1:41:18,23:18:626:23:824:-62.1411,0,-44.3211	0/1:109:59,50:59:2091:50:1739:-123.978,0,-155.647	0/1:59:42,17:42:1488:17:604:-36.9298,0,-116.454	1/1:191:0,191:0:0:191:6712:-603.995,-57.4967,0	1/1:104:0,104:0:0:104:3700:-333.194,-31.3071,0
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chr06	30545720	.	C	T	30171	PASS	AB=0.523795;ABP=19.6484;AC=47;AF=0.252688;AN=186;AO=1779;CIGAR=1X;DP=6190;DPB=6190;DPRA=1.21896;EPP=3866.06;EPPR=9529.31;GTI=1;LEN=1;MEANALT=1.0566;MQM=59.9854;MQMR=59.9991;NS=93;NUMALT=1;ODDS=0.18993;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63569;QR=157425;RO=4407;RPL=1779;RPP=3866.06;RPPR=9529.31;RPR=0;RUN=1;SAF=0;SAP=3866.06;SAR=1779;SRF=0;SRP=9572.69;SRR=4407;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:29,28:29:1036:28:993:-72.5238,0,-76.3952	0/1:61:27,34:27:968:34:1178:-87.9574,0,-69.0745	0/1:88:31,57:31:1104:57:2006:-154.319,0,-73.18	0/0:116:115,1:115:4113:1:36:0,-31.3212,-366.755	0/0:83:83,0:83:2973:0:0:0,-24.9855,-267.801	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/1:97:52,45:52:1849:45:1612:-116.17,0,-137.488	0/0:67:67,0:67:2361:0:0:0,-20.169,-212.747	0/1:89:40,49:40:1421:49:1760:-131.892,0,-101.394	0/1:121:64,57:64:2304:57:2048:-148.167,0,-171.196	0/0:85:85,0:85:3030:0:0:0,-25.5875,-272.93	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:88:46,42:46:1652:42:1508:-109.524,0,-122.478	0/1:59:24,35:24:860:35:1234:-93.6012,0,-59.9611	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:26:25,1:25:900:1:36:0,-4.2285,-77.7227	0/1:49:27,22:27:972:22:792:-56.8552,0,-73.0474	0/0:79:79,0:79:2802:0:0:0,-23.7814,-252.418	0/0:95:93,2:93:3317:2:72:0,-21.7611,-291.911	0/1:31:12,19:12:432:19:684:-52.5584,0,-29.8893	0/1:57:33,24:33:1188:24:864:-60.9239,0,-90.0699	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/1:120:50,70:50:1792:70:2512:-190.208,0,-125.439	0/1:144:71,73:71:2528:73:2628:-193.418,0,-184.424	0/1:26:11,15:11:392:15:540:-41.1098,0,-27.7933	0/1:126:54,72:54:1936:72:2558:-192.167,0,-136.587	0/1:77:38,39:38:1353:39:1389:-102.128,0,-98.8891	0/1:54:26,28:26:916:28:978:-72.073,0,-66.5008	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:139:139,0:139:4947:0:0:0,-41.8432,-445.38	0/1:40:23,17:23:820:17:608:-43.0108,0,-62.0813	0/1:111:52,59:52:1868:59:2109:-156.664,0,-134.985	.:.:.:.:.:.:.:.	0/1:78:37,41:37:1320:41:1472:-109.296,0,-95.6216	0/1:63:33,30:33:1169:30:1061:-76.8345,0,-86.5504	0/1:107:36,70:36:1296:70:2493:-192.353,0,-84.6749	0/1:52:32,20:32:1144:20:716:-49.1142,0,-87.616	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:43:43,0:43:1506:0:0:0,-12.9443,-135.829	0/1:77:36,41:36:1269:41:1472:-109.597,0,-91.3314	0/0:70:70,0:70:2462:0:0:0,-21.0721,-221.832	0/1:39:16,23:16:576:23:820:-62.3823,0,-40.4348	0/1:114:54,60:54:1932:60:2148:-159.269,0,-139.839	0/0:85:85,0:85:3018:0:0:0,-25.5875,-271.849	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:72:72,0:72:2546:0:0:0,-21.6742,-229.388	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:96:34,62:34:1224:62:2194:-168.823,0,-81.5682	0/0:101:100,0:100:3572:0:0:0,-30.103,-321.329	0/1:44:29,15:29:1040:15:540:-35.6912,0,-80.669	0/1:37:21,16:21:752:16:576:-41.0369,0,-56.8681	0/0:56:56,0:56:1981:0:0:0,-16.8577,-178.563	0/1:100:38,62:38:1364:62:2228:-170.681,0,-92.9577	0/0:93:92,1:92:3300:1:36:0,-24.3975,-293.62	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:26:14,12:14:504:12:428:-31.032,0,-37.8713	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:109:53,56:53:1900:56:2012:-148.541,0,-138.466	0/0:151:151,0:151:5381:0:0:0,-45.4555,-484.423	0/1:117:58,58:58:2080:58:2084:-152.551,0,-152.191	0/1:114:46,67:46:1648:67:2385:-180.53,0,-114.232	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:55:54,1:54:1940:1:36:0,-12.9584,-171.278	0/0:86:86,0:86:3061:0:0:0,-25.8886,-275.718	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084	0/1:51:22,29:22:784:29:1044:-78.9223,0,-55.5314	0/0:55:54,1:54:1924:1:30:0,-13.5571,-170.437	0/1:28:11,17:11:396:17:608:-46.6232,0,-27.5539	0/1:101:49,52:49:1741:52:1853:-136.644,0,-126.568	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:61:33,28:33:1169:28:1004:-72.313,0,-87.1525	0/1:77:38,39:38:1356:39:1404:-103.48,0,-99.1612	0/1:74:41,33:41:1461:33:1180:-84.2318,0,-109.508	0/1:191:107,84:107:3832:84:3012:-213.814,0,-287.58	0/1:73:32,41:32:1137:41:1476:-111.161,0,-80.6618	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916
chr06	30557446	.	C	T	21754	PASS	AB=0.471059;ABP=22.9946;AC=46;AF=0.247312;AN=186;AO=1300;CIGAR=1X;DP=5559;DPB=5559;DPRA=1.08294;EPP=2748.29;EPPR=8703.52;GTI=1;LEN=1;MEANALT=1.02128;MQM=60;MQMR=59.9885;NS=93;NUMALT=1;ODDS=1.345;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46568;QR=151880;RO=4255;RPL=1291;RPP=2748.29;RPPR=8703.52;RPR=9;RUN=1;SAF=0;SAP=2825.92;SAR=1300;SRF=0;SRP=9242.63;SRR=4255;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:12,18:12:406:18:644:-49.2597,0,-27.8333	0/1:49:29,20:29:1040:20:716:-50.0172,0,-79.1639	0/1:69:38,31:38:1351:31:1108:-79.2599,0,-101.119	0/0:143:142,0:142:5051:0:0:0,-42.7463,-454.36	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.761	0/0:89:89,0:89:3167:0:0:0,-26.7917,-285.255	0/1:66:23,43:23:824:43:1540:-119.025,0,-54.6153	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:69:42,27:42:1504:27:972:-67.0268,0,-114.884	0/1:34:20,14:20:716:14:504:-35.4631,0,-54.5327	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.429	0/1:57:29,28:29:1036:28:1008:-73.8776,0,-76.3952	0/1:33:19,14:19:684:14:500:-35.4022,0,-51.9563	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/0:51:51,0:51:1806:0:0:0,-15.3525,-162.82	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:21:10,11:10:352:11:392:-29.2984,0,-25.6966	0/0:91:91,0:91:3255:0:0:0,-27.3937,-293.17	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.213	0/1:57:19,38:19:676:38:1364:-105.902,0,-44.0093	0/1:81:46,35:46:1639:35:1256:-88.9619,0,-123.415	0/0:88:88,0:88:3133:0:0:0,-26.4906,-282.195	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:232:145,87:145:5183:87:3112:-210.468,0,-396.771	0/1:104:60,44:60:2139:44:1564:-109.745,0,-161.47	0/1:25:13,12:13:464:12:432:-31.6954,0,-34.5718	0/1:125:69,56:69:2453:56:2012:-143.724,0,-183.394	0/1:40:23,17:23:824:17:612:-43.3722,0,-62.4421	0/1:67:38,29:38:1368:29:1042:-73.9257,0,-103.252	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.824	0/1:87:45,42:45:1608:42:1512:-110.185,0,-118.82	0/1:36:21,15:21:752:15:536:-37.7377,0,-57.1692	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:63:31,32:31:1108:32:1148:-84.6649,0,-81.0661	0/1:25:13,12:13:468:12:428:-31.3331,0,-34.9339	0/1:76:38,38:38:1360:38:1364:-100.182,0,-99.8223	0/1:51:13,38:13:460:38:1364:-107.708,0,-26.3828	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.545	0/1:56:35,21:35:1251:21:756:-51.5095,0,-96.0366	0/0:106:106,0:106:3771:0:0:0,-31.9092,-339.591	0/1:90:51,39:51:1828:39:1391:-98.3964,0,-137.708	0/1:118:59,59:59:2082:59:2104:-154.108,0,-152.128	0/0:149:149,0:149:5344:0:0:0,-44.8535,-481.092	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	.:.:.:.:.:.:.:.	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6551	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:115:115,0:115:4109:0:0:0,-34.6184,-369.994	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:141:92,48:92:3278:48:1716:-112.261,0,-252.775	0/0:87:87,0:87:3115:0:0:0,-26.1896,-280.576	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	0/1:38:28,10:28:1008:10:356:-20.9421,0,-79.5972	0/0:70:69,1:69:2472:1:36:0,-17.4738,-219.135	0/1:75:43,32:43:1540:32:1148:-81.0526,0,-116.316	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:78:77,0:77:2733:0:0:0,-23.1793,-245.853	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/1:27:13,14:13:464:14:504:-37.5703,0,-33.9697	0/0:133:133,0:133:4748:0:0:0,-40.037,-427.48	0/1:62:42,20:42:1491:20:716:-46.1039,0,-115.82	0/1:102:42,60:42:1491:60:2134:-161.623,0,-103.779	0/0:91:91,0:91:3243:0:0:0,-27.3937,-292.092	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:60:59,0:59:2099:0:0:0,-17.7608,-188.819	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.92	0/0:99:98,1:98:3503:1:32:0,-26.6027,-312.281	0/1:83:39,44:39:1387:44:1561:-115.795,0,-100.143	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/1:43:25,18:25:896:18:640:-44.985,0,-68.0161	0/1:97:45,52:45:1596:52:1868:-139.199,0,-114.728	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:49:22,27:22:761:27:968:-72.6869,0,-54.0561	0/1:57:25,32:25:891:32:1152:-86.8314,0,-63.3501	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	0/1:91:39,52:39:1396:52:1872:-141.365,0,-98.5454	0/1:42:15,27:15:532:27:972:-75.1546,0,-35.5698	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:55:55,0:55:1951:0:0:0,-16.5566,-175.865
chr06	30572155	.	T	A	108091	PASS	AB=0.465085;ABP=42.2836;AC=140;AF=0.744681;AN=188;AO=5210;CIGAR=1X;DP=7204;DPB=7204;DPRA=25.81;EPP=11316.4;EPPR=4317.73;GTI=3;LEN=1;MEANALT=1.04301;MQM=59.9923;MQMR=60;NS=94;NUMALT=1;ODDS=0.209703;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185511;QR=71089;RO=1987;RPL=5210;RPP=11316.4;RPPR=4317.73;RPR=0;RUN=1;SAF=5210;SAP=11316.4;SAR=0;SRF=1987;SRP=4317.73;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:25,17:25:896:17:608:-42.4088,0,-68.3171	0/1:103:58,45:58:2084:45:1593:-112.652,0,-156.824	0/1:104:63,41:63:2240:41:1455:-99.9381,0,-170.554	1/1:179:0,179:0:0:179:6371:-573.481,-53.8844,0	1/1:65:0,65:0:0:65:2316:-208.701,-19.567,0	1/1:64:0,64:0:0:64:2284:-205.821,-19.2659,0	1/1:184:0,184:0:0:184:6581:-592.37,-55.3895,0	0/1:81:41,40:41:1472:40:1424:-104.074,0,-108.393	1/1:66:0,66:0:0:66:2354:-212.118,-19.868,0	0/1:84:48,36:48:1715:36:1269:-89.2242,0,-129.348	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:36:0,36:0:0:36:1278:-115.323,-10.8371,0	1/1:39:0,39:0:0:39:1395:-125.848,-11.7402,0	0/1:34:16,18:16:572:18:640:-47.6943,0,-41.5784	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:29:0,29:0:0:29:1027:-92.7414,-8.72987,0	1/1:24:0,24:0:0:24:843:-76.188,-7.22472,0	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	1/1:209:0,209:0:0:209:7462:-671.626,-62.9153,0	1/1:93:0,93:0:0:93:3320:-299.018,-27.9958,0	0/1:168:122,46:122:4376:46:1625:-95.9639,0,-343.44	0/1:105:56,49:56:2008:49:1725:-123.923,0,-149.385	1/1:93:0,93:0:0:93:3320:-299.018,-27.9958,0	1/1:62:0,62:0:0:62:2190:-197.366,-18.6639,0	0/1:208:116,92:116:4176:92:3255:-230.556,0,-313.405	0/1:112:59,53:59:2116:53:1880:-135.761,0,-156.993	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:311:170,141:170:6099:141:5022:-358.134,0,-455.388	0/1:146:75,71:75:2688:71:2544:-185.26,0,-198.214	0/1:128:65,63:65:2319:63:2252:-164.411,0,-170.438	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:7:0,7:0:0:7:242:-22.1161,-2.10721,0	1/1:82:0,82:0:0:82:2914:-262.495,-24.6845,0	0/1:247:116,131:116:4137:131:4633:-342.778,0,-298.159	0/1:21:10,11:10:351:11:392:-29.2984,0,-25.605	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:176:81,94:81:2891:94:3337:-247.508,0,-207.386	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:136:85,51:85:3022:51:1777:-119.268,0,-231.271	0/1:28:9,19:9:324:19:672:-52.3642,0,-21.077	1/1:20:0,20:0:0:20:694:-62.7787,-6.0206,0	1/1:86:2,84:2:72:84:2965:-260.246,-19.0519,0	0/1:99:41,58:41:1472:58:2030:-153.167,0,-102.974	1/1:91:0,91:0:0:91:3241:-291.91,-27.3937,0	0/1:98:48,50:48:1720:50:1796:-132.421,0,-125.585	0/1:104:56,48:56:2008:48:1720:-123.778,0,-149.686	1/1:165:0,165:0:0:165:5916:-532.548,-49.67,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:79:0,79:0:0:79:2812:-253.318,-23.7814,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:10:0,10:0:0:10:341:-31.0178,-3.0103,0	1/1:138:1,137:1:32:137:4888:-436.875,-38.3428,0	1/1:64:0,64:0:0:64:2267:-204.293,-19.2659,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:86:0,86:0:0:86:3057:-275.359,-25.8886,0	1/1:96:1,95:1:36:95:3380:-300.817,-25.3006,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:158:84,74:84:3016:74:2624:-188.843,0,-224.108	1/1:157:1,156:1:36:156:5579:-498.635,-43.6634,0	0/1:63:37,26:37:1296:26:923:-64.4219,0,-97.9734	0/1:78:40,38:40:1440:38:1341:-97.5077,0,-106.417	1/1:181:0,181:0:0:181:6453:-580.857,-54.4864,0	0/1:144:80,64:80:2860:64:2264:-160.673,0,-214.289	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:66:0,66:0:0:66:2352:-211.939,-19.868,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:24:8,16:8:288:16:572:-44.5887,0,-19.0427	1/1:139:0,139:0:0:139:4963:-446.82,-41.8432,0	0/1:35:16,19:16:576:19:674:-50.4511,0,-41.6389	1/1:124:0,124:0:0:124:4447:-400.399,-37.3277,0	0/1:132:67,65:67:2397:65:2332:-170.404,0,-176.249	0/1:115:72,38:72:2570:38:1360:-89.263,0,-198.113	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:87:0,87:0:0:87:3112:-280.307,-26.1896,0	1/1:112:0,112:0:0:112:3985:-358.84,-33.7154,0	1/1:191:1,189:1:36:189:6765:-605.324,-53.9573,0	0/1:69:33,36:33:1165:36:1280:-94.7322,0,-84.3839	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:36:17,19:17:595:19:684:-51.0532,0,-43.0396	0/1:57:32,25:32:1144:25:889:-63.1693,0,-86.1108	0/1:23:7,16:7:248:16:576:-45.2513,0,-15.7405	0/1:36:17,19:17:608:19:680:-50.6921,0,-44.2149	0/1:39:22,17:22:792:17:597:-42.316,0,-59.8655	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:37:17,20:17:608:20:711:-53.1775,0,-43.9139	0/1:23:16,7:16:576:7:248:-15.7405,0,-45.2513	1/1:97:0,97:0:0:97:3441:-309.903,-29.1999,0	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0
chr06	30634826	.	A	G	73549.5	PASS	AB=0.517269;ABP=19.2099;AC=49;AF=0.260638;AN=188;AO=3260;CIGAR=1X;DP=12023;DPB=12023;DPRA=1.27338;EPP=7082.01;EPPR=19007.7;GTI=1;LEN=1;MEANALT=1.08475;MQM=59.9181;MQMR=50.8463;NS=94;NUMALT=1;ODDS=0.677611;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115055;QR=310613;RO=8756;RPL=1551;RPP=19.6387;RPPR=1000.96;RPR=1709;RUN=1;SAF=1551;SAP=19.6387;SAR=1709;SRF=3374;SRP=1002.95;SRR=5382;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:24,13:24:838:13:468:-31.3215,0,-62.0823	0/1:70:34,36:34:1207:36:1268:-93.3479,0,-85.5958	0/1:62:31,31:31:1108:31:1092:-79.9174,0,-78.6018	0/0:283:282,0:282:10007:0:0:0,-84.8905,-893.116	0/0:167:166,1:166:5918:1:36:0,-46.6737,-522.782	0/0:46:46,0:46:1611:0:0:0,-13.8474,-141.121	0/0:219:219,0:219:7785:0:0:0,-65.9256,-697.054	0/1:81:47,34:47:1667:34:1172:-81.1611,0,-119.064	0/0:90:90,0:90:3210:0:0:0,-27.0927,-280.754	0/1:204:115,89:115:4067:89:3148:-222.135,0,-302.662	0/1:90:41,49:41:1447:49:1733:-129.16,0,-102.686	0/0:74:74,0:74:2615:0:0:0,-22.2762,-228.404	0/0:63:63,0:63:2206:0:0:0,-18.9649,-192.675	0/1:146:60,86:60:2099:86:3060:-231.677,0,-144.375	0/1:109:54,55:54:1927:55:1909:-139.271,0,-140.082	0/0:101:101,0:101:3589:0:0:0,-30.404,-319.629	0/0:20:20,0:20:707:0:0:0,-6.0206,-62.2244	0/0:26:26,0:26:915:0:0:0,-7.82678,-80.217	0/1:30:17,13:17:603:13:451:-31.8889,0,-43.8791	0/0:278:276,1:276:9849:1:36:0,-80.1263,-874.284	0/0:391:390,0:390:13904:0:0:0,-117.402,-1241.27	0/1:90:33,57:33:1158:57:2013:-154.349,0,-76.2557	0/1:225:113,112:113:4014:112:3945:-287.512,0,-290.346	0/0:176:176,0:176:6296:0:0:0,-52.9813,-560.178	0/0:185:185,0:185:6591:0:0:0,-55.6905,-585.187	0/1:295:109,186:109:3883:186:6523:-498.354,0,-258.416	0/1:335:166,169:166:5905:169:5995:-438.814,0,-426.699	0/1:59:23,36:23:811:36:1292:-98.823,0,-55.0462	0/1:255:129,126:129:4552:126:4466:-325.348,0,-329.973	0/1:306:148,158:148:5284:158:5606:-412.549,0,-379.2	0/1:159:64,95:64:2273:95:3360:-254.754,0,-155.407	0/1:7:5,2:5:171:2:72:-4.72951,0,-13.5206	0/1:15:4,11:4:144:11:387:-30.6505,0,-8.66008	0/0:7:7,0:7:243:0:0:0,-2.10721,-21.774	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.0412	0/0:9:9,0:9:316:0:0:0,-2.70927,-27.5892	0/0:163:163,0:163:5794:0:0:0,-49.0679,-514.525	0/1:281:121,160:121:4289:160:5728:-431.043,0,-298.936	0/1:46:27,19:27:942:19:671:-46.8684,0,-68.8493	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:272:161,110:161:5745:110:3874:-266.962,0,-428.882	0/1:74:29,45:29:1044:45:1572:-119.445,0,-70.833	0/1:249:131,118:131:4667:118:4136:-297.458,0,-342.132	0/1:117:68,49:68:2412:49:1756:-123.103,0,-181.47	0/0:103:103,0:103:3643:0:0:0,-31.0061,-326.224	0/0:109:105,4:105:3724:4:144:0,-20.1553,-319.005	0/1:81:40,41:40:1415:41:1454:-106.772,0,-99.9859	0/0:255:253,2:253:8939:2:72:0,-69.9259,-789.968	0/1:126:68,58:68:2397:58:2027:-144.769,0,-176.923	0/1:218:117,101:117:4123:101:3526:-251.91,0,-303.733	0/0:105:104,1:104:3687:1:36:0,-28.0099,-324.874	0/1:16:7,9:7:248:9:315:-23.8707,0,-16.5146	0/0:77:77,0:77:2727:0:0:0,-23.1793,-239.884	0/0:87:87,0:87:3059:0:0:0,-26.1896,-271.78	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.0045	0/0:213:211,1:211:7490:1:36:0,-60.5527,-663.68	0/0:99:98,1:98:3487:1:36:0,-26.2037,-307.21	0/0:6:6,0:6:197:0:0:0,-1.80618,-17.6909	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0205	0/0:142:142,0:142:5045:0:0:0,-42.7463,-448.829	0/0:178:178,0:178:6273:0:0:0,-53.5833,-562.396	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.5346	0/1:236:67,168:67:2359:168:5882:-458.481,0,-139.549	0/0:282:279,3:279:9922:3:108:0,-74.8153,-876.894	0/1:138:79,59:79:2811:59:2064:-144.487,0,-209.979	0/1:147:79,68:79:2793:68:2407:-172.636,0,-205.626	0/0:268:262,6:262:9301:6:216:0,-60.8855,-811.015	0/1:182:60,121:60:2129:121:4332:-335.209,0,-134.859	0/0:44:44,0:44:1556:0:0:0,-13.2453,-138.62	0/0:58:58,0:58:2033:0:0:0,-17.4597,-179.091	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.0669	0/1:34:22,12:22:788:12:417:-27.6252,0,-60.7655	0/0:104:103,1:103:3633:1:36:0,-27.7088,-316.48	0/1:32:13,19:13:464:19:665:-50.5398,0,-31.5569	0/0:195:195,0:195:6911:0:0:0,-58.7008,-615.185	0/1:212:111,101:111:3970:101:3567:-257.416,0,-290.808	0/1:129:80,49:80:2806:49:1731:-117.234,0,-208.252	0/0:65:64,1:64:2255:1:36:0,-15.9687,-194.236	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.7034	0/0:136:136,0:136:4818:0:0:0,-40.9401,-428.331	0/0:131:131,0:131:4582:0:0:0,-39.4349,-402.17	0/0:277:277,0:277:9835:0:0:0,-83.3853,-878.778	0/1:138:74,64:74:2627:64:2276:-163.56,0,-194.478	0/0:106:106,0:106:3771:0:0:0,-31.9092,-337.307	0/1:188:91,97:91:3232:97:3420:-251.422,0,-233.581	0/1:264:136,128:136:4855:128:4518:-327.319,0,-354.903	0/1:14:9,5:9:311:5:180:-12.3376,0,-23.5773	0/1:64:34,30:34:1216:30:1029:-73.6205,0,-87.5419	0/1:63:28,35:28:1004:35:1229:-91.947,0,-69.1651	0/1:55:29,26:29:1028:26:920:-66.5604,0,-75.3666	0/1:141:68,73:68:2412:73:2550:-187.073,0,-170.898	0/1:151:42,109:42:1480:109:3841:-300.432,0,-87.4638	0/0:165:165,0:165:5822:0:0:0,-49.6699,-521.556	0/0:201:201,0:201:7115:0:0:0,-60.507,-636.937
chr06	30658553	.	A	C	10008.8	PASS	AB=0.372244;ABP=440.223;AC=47;AF=0.252688;AN=186;AO=1150;CIGAR=1X;DP=6680;DPB=6680;DPRA=0.902812;EPP=2500.2;EPPR=12004.7;GTI=8;LEN=1;MEANALT=1;MQM=30.6817;MQMR=59.8712;NS=93;NUMALT=1;ODDS=0.55117;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41181;QR=197094;RO=5527;RPL=0;RPP=2500.2;RPPR=12004.7;RPR=1150;RUN=1;SAF=1150;SAP=2500.2;SAR=0;SRF=5527;SRP=12004.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:29,5:29:1021:5:180:-3.81585,0,-81.9652	0/1:83:47,36:47:1684:36:1296:-73.3877,0,-126.862	0/1:116:90,26:90:3171:26:928:-35.6184,0,-250.675	0/0:184:184,0:184:6568:0:0:0,-55.3895,-591.188	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.157	0/1:107:77,30:77:2772:30:1076:-50.4274,0,-217.51	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.468	0/1:103:57,46:57:2032:46:1648:-91.4508,0,-151.207	0/1:30:22,8:22:777:8:288:-12.7286,0,-61.2195	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.667	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.786	0/1:34:24,10:24:849:10:360:-16.8898,0,-66.4895	0/1:57:29,28:29:1029:28:996:-57.98,0,-75.7615	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:11:7,4:7:237:4:144:-7.99046,0,-18.3477	0/0:150:150,0:150:5350:0:0:0,-45.1545,-481.592	0/0:168:168,0:168:5997:0:0:0,-50.573,-539.836	0/1:26:11,15:11:396:15:540:-31.6508,0,-28.156	0/1:46:35,11:35:1260:11:396:-15.1473,0,-99.8581	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.227	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.669	0/1:176:111,65:111:3927:65:2310:-114.859,0,-300.623	0/1:126:76,50:76:2682:50:1796:-96.2845,0,-203.692	0/1:19:10,9:10:337:9:324:-18.7226,0,-24.935	0/1:229:155,74:155:5544:74:2640:-124.276,0,-430.146	0/1:100:66,34:66:2338:34:1224:-61.6022,0,-180.573	0/1:63:43,20:43:1540:20:708:-34.477,0,-119.924	0/1:7:5,2:5:180:2:72:-3.55622,0,-14.4449	0/1:9:5,4:5:180:4:144:-8.31951,0,-13.8428	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:133:133,0:133:4749:0:0:0,-40.037,-427.564	0/1:82:58,24:58:2053:24:864:-39.1894,0,-160.354	0/1:17:10,7:10:356:7:248:-13.354,0,-27.2637	.:.:.:.:.:.:.:.	0/1:86:52,34:52:1849:34:1220:-65.4764,0,-140.799	0/1:17:9,8:9:324:8:284:-16.5675,0,-24.3883	0/1:92:73,19:73:2620:19:674:-22.1327,0,-208.353	0/1:32:16,16:16:576:16:572:-33.4661,0,-42.542	0/0:35:34,0:34:1220:0:0:0,-10.235,-109.747	0/0:111:110,1:110:3925:1:36:0,-30.5116,-350.539	0/1:68:56,12:56:1989:12:432:-11.8569,0,-158.812	0/0:196:196,0:196:6975:0:0:0,-59.0019,-627.588	0/1:61:40,21:40:1421:21:756:-38.2715,0,-109.822	0/1:87:65,22:65:2317:22:788:-30.2264,0,-182.599	0/0:145:145,0:145:5181:0:0:0,-43.6493,-466.41	0/1:9:4,5:4:144:5:180:-11.0022,0,-10.6043	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.134	0/0:83:82,0:82:2936:0:0:0,-24.6845,-264.111	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:173:173,0:173:6161:0:0:0,-52.0782,-554.583	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8171	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.185	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.535	0/1:3:2,1:2:72:1:36:-2.07766,0,-5.93363	0/1:211:105,106:105:3731:106:3781:-209.661,0,-272.436	0/0:154:153,1:153:5476:1:36:0,-43.3779,-489.576	0/1:67:47,20:47:1684:20:720:-34.0455,0,-131.678	0/1:70:57,13:57:1935:13:468:-14.1008,0,-153.265	0/0:134:134,0:134:4793:0:0:0,-40.338,-431.509	0/1:95:36,59:36:1292:59:2107:-128.844,0,-87.9635	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:25:22,3:22:788:3:108:-0.67133,0,-63.7144	0/0:98:98,0:98:3459:0:0:0,-29.5009,-311.521	0/1:77:47,30:47:1673:30:1080:-59.4616,0,-127.676	0/0:85:85,0:85:3013:0:0:0,-25.5875,-271.401	0/1:188:106,82:106:3788:82:2940:-161.143,0,-284.526	0/1:60:43,17:43:1544:17:612:-27.8355,0,-121.191	0/0:121:121,0:121:4321:0:0:0,-36.4246,-389.034	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/0:125:124,0:124:4409:0:0:0,-37.3277,-396.62	0/0:92:92,0:92:3289:0:0:0,-27.6948,-296.225	0/0:216:216,0:216:7729:0:0:0,-65.0225,-695.584	0/1:59:28,31:28:1004:31:1101:-63.5518,0,-72.9151	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:37:25,12:25:900:12:432:-21.3521,0,-70.1653	0/1:75:39,36:39:1404:36:1292:-72.5931,0,-104.057	0/1:12:5,7:5:180:7:252:-15.7979,0,-12.9397	0/1:42:24,18:24:864:18:644:-35.0757,0,-65.4393	0/1:33:18,15:18:644:15:540:-29.6761,0,-48.3566	0/1:20:14,6:14:504:6:216:-10.302,0,-39.6775	0/1:46:26,20:26:921:20:720:-40.1042,0,-69.3574	0/1:37:10,27:10:360:27:972:-61.5771,0,-21.6062	0/0:176:176,0:176:6269:0:0:0,-52.9813,-564.243	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03
chr06	30658559	.	C	A	10045.2	PASS	AB=0.375937;ABP=413.035;AC=47;AF=0.252688;AN=186;AO=1156;CIGAR=1X;DP=6643;DPB=6643;DPRA=0.985278;EPP=2513.23;EPPR=11865.8;GTI=7;LEN=1;MEANALT=1;MQM=30.7587;MQMR=59.8863;NS=93;NUMALT=1;ODDS=0.751904;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41195;QR=196373;RO=5487;RPL=0;RPP=2513.23;RPPR=11865.8;RPR=1156;RUN=1;SAF=1156;SAP=2513.23;SAR=0;SRF=5487;SRP=11917.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:29,5:29:1031:5:180:-3.81585,0,-82.8676	0/1:83:47,36:47:1692:36:1284:-72.9668,0,-127.581	0/1:116:90,26:90:3187:26:928:-35.6184,0,-252.133	0/0:183:183,0:183:6532:0:0:0,-55.0885,-587.935	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:107:77,30:77:2760:30:1080:-50.5678,0,-216.431	0/0:93:93,0:93:3332:0:0:0,-27.9958,-299.828	0/1:103:57,46:57:2029:46:1641:-90.8619,0,-150.933	0/1:30:22,8:22:792:8:273:-11.8874,0,-62.5748	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.021	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.066	0/1:33:23,10:23:828:10:360:-17.1909,0,-64.9101	0/1:56:28,28:28:1004:28:1000:-57.2793,0,-73.8173	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:11:7,4:7:252:4:144:-7.99046,0,-19.7176	0/0:149:149,0:149:5343:0:0:0,-44.8535,-480.964	0/0:163:163,0:163:5848:0:0:0,-49.0679,-526.43	0/1:26:11,15:11:396:15:540:-31.6508,0,-28.156	0/1:46:35,11:35:1260:11:392:-15.025,0,-99.8581	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.235	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.627	0/1:172:109,63:109:3904:63:2211:-109.908,0,-299.762	0/1:126:76,50:76:2728:50:1781:-95.4718,0,-207.831	0/1:19:10,9:10:356:9:324:-18.7226,0,-26.6583	0/1:228:154,74:154:5477:74:2602:-122.861,0,-424.422	0/1:99:64,35:64:2285:35:1256:-64.531,0,-176.108	0/1:62:42,20:42:1512:20:720:-35.1432,0,-117.708	0/1:7:5,2:5:180:2:72:-3.55622,0,-14.4449	0/1:9:5,4:5:180:4:144:-8.31951,0,-13.8428	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:133:133,0:133:4784:0:0:0,-40.037,-430.71	0/1:82:58,24:58:2084:24:856:-38.9462,0,-163.144	0/1:17:10,7:10:360:7:252:-13.4961,0,-27.6268	.:.:.:.:.:.:.:.	0/1:85:51,34:51:1836:34:1220:-65.7963,0,-139.933	0/1:17:9,8:9:324:8:284:-16.5866,0,-24.3883	0/1:92:73,19:73:2624:19:680:-22.1884,0,-208.712	0/1:32:16,16:16:572:16:572:-33.4661,0,-42.1805	0/0:34:34,0:34:1192:0:0:0,-10.235,-107.582	0/0:111:110,1:110:3944:1:36:0,-30.5116,-352.249	0/1:68:56,12:56:2004:12:432:-11.8569,0,-160.164	0/0:193:193,0:193:6870:0:0:0,-58.0988,-618.244	0/1:61:38,23:38:1368:23:828:-44.1944,0,-105.058	0/1:87:65,22:65:2328:22:792:-30.348,0,-183.59	0/0:146:146,0:146:5220:0:0:0,-43.9504,-469.932	0/1:9:4,5:4:144:5:180:-11.0022,0,-10.6043	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.971	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.788	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:172:172,0:172:6160:0:0:0,-51.7772,-554.486	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.665	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.175	0/1:3:2,1:2:72:1:36:-2.07766,0,-5.93363	0/1:212:105,107:105:3759:107:3810:-211.41,0,-274.656	0/0:154:153,1:153:5491:1:36:0,-43.3779,-490.92	0/1:66:46,20:46:1647:20:705:-33.5122,0,-128.65	0/1:64:50,14:50:1746:14:470:-16.8695,0,-138.048	0/0:134:134,0:134:4784:0:0:0,-40.338,-430.7	0/1:96:36,60:36:1284:60:2144:-131.334,0,-86.9421	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:25:22,3:22:788:3:108:-0.67133,0,-63.7144	0/0:98:98,0:98:3507:0:0:0,-29.5009,-315.84	0/1:76:46,30:46:1656:30:1076:-59.6222,0,-126.45	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.609	0/1:187:104,83:104:3732:83:2933:-162.01,0,-279.787	0/1:60:43,17:43:1527:17:612:-27.8355,0,-119.66	0/0:120:120,0:120:4275:0:0:0,-36.1236,-384.898	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:124:124,0:124:4437:0:0:0,-37.3277,-399.496	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.27	0/0:215:214,1:214:7676:1:21:0,-62.6223,-688.743	0/1:59:28,31:28:1004:31:1116:-63.7913,0,-72.9151	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:39:26,13:26:932:13:464:-23.3106,0,-72.4411	0/1:74:39,35:39:1404:35:1256:-70.2113,0,-104.358	0/1:12:5,7:5:180:7:252:-15.7979,0,-12.9397	0/1:43:25,18:25:900:18:648:-34.9155,0,-68.3767	0/1:33:18,15:18:648:15:536:-29.5352,0,-48.7179	0/1:20:14,6:14:504:6:216:-10.302,0,-39.6775	0/1:44:24,20:24:864:20:720:-40.7063,0,-64.8363	0/1:37:10,27:10:360:27:972:-61.5771,0,-21.6062	0/0:175:175,0:175:6280:0:0:0,-52.6802,-565.196	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549
chr06	30658582	.	T	C	9606.35	PASS	AB=0.370775;ABP=440.758;AC=47;AF=0.252688;AN=186;AO=1124;CIGAR=1X;DP=6562;DPB=6562;DPRA=0.995022;EPP=2443.75;EPPR=11789.8;GTI=8;LEN=1;MEANALT=1.01923;MQM=30.7918;MQMR=59.8815;NS=93;NUMALT=1;ODDS=0.125143;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39921;QR=193037;RO=5436;RPL=1124;RPP=2443.75;RPPR=11789.8;RPR=0;RUN=1;SAF=1124;SAP=2443.75;SAR=0;SRF=5436;SRP=11807.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:27,5:27:948:5:180:-4.41791,0,-76.0017	0/1:81:46,35:46:1648:35:1231:-70.0915,0,-124.225	0/1:113:88,25:88:3122:25:891:-33.625,0,-247.17	0/0:184:184,0:184:6517:0:0:0,-55.3895,-586.587	0/0:39:39,0:39:1362:0:0:0,-11.7402,-122.877	0/0:46:46,0:46:1621:0:0:0,-13.8474,-146.177	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:106:76,30:76:2715:30:1060:-50.1668,0,-212.684	0/0:91:90,1:90:3215:1:36:0,-23.7955,-285.704	0/1:104:58,46:58:2061:46:1640:-90.9406,0,-153.51	0/1:30:22,8:22:792:8:288:-12.7286,0,-62.5748	0/0:51:51,0:51:1787:0:0:0,-15.3525,-161.093	0/0:48:48,0:48:1678:0:0:0,-14.4494,-151.296	0/1:33:23,10:23:773:10:356:-17.0685,0,-59.9439	0/1:56:28,28:28:1004:28:991:-56.9231,0,-73.8157	0/0:32:32,0:32:1126:0:0:0,-9.63296,-101.647	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/1:11:7,4:7:252:4:135:-7.55232,0,-19.7176	0/0:147:147,0:147:5251:0:0:0,-44.2514,-472.699	0/0:165:165,0:165:5891:0:0:0,-49.6699,-530.301	0/1:25:11,14:11:396:14:504:-29.3394,0,-28.457	0/1:45:34,11:34:1220:11:383:-14.9387,0,-96.5605	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.629	0/0:52:52,0:52:1808:0:0:0,-15.6536,-162.995	0/1:168:106,62:106:3781:62:2194:-109.451,0,-289.901	0/1:124:75,49:75:2658:49:1756:-94.1014,0,-202.137	0/1:19:10,9:10:343:9:324:-18.7226,0,-25.4776	0/1:223:151,72:151:5357:72:2554:-120.229,0,-415.133	0/1:97:64,33:64:2280:33:1176:-59.4582,0,-176.262	0/1:60:41,19:41:1463:19:676:-32.9636,0,-113.9	0/1:7:5,2:5:180:2:72:-3.55622,0,-14.4449	0/1:9:5,4:5:180:4:144:-8.31951,0,-13.8428	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:132:132,0:132:4700:0:0:0,-39.736,-423.156	0/1:80:58,22:58:2071:22:776:-33.9391,0,-162.576	0/1:16:9,7:9:324:7:239:-13.5619,0,-24.6894	.:.:.:.:.:.:.:.	0/1:84:51,33:51:1812:33:1165:-62.419,0,-138.075	0/1:17:9,8:9:305:8:284:-16.5866,0,-22.6597	0/1:90:72,18:72:2575:18:640:-20.0775,0,-204.906	0/1:32:16,16:16:576:16:561:-32.7525,0,-42.542	0/0:35:35,0:35:1220:0:0:0,-10.536,-110.101	0/0:110:109,1:109:3887:1:36:0,-30.2105,-347.122	0/1:67:56,11:56:2004:11:396:-9.408,0,-160.465	0/0:190:190,0:190:6708:0:0:0,-57.1957,-603.535	0/1:58:36,22:36:1270:22:784:-41.6139,0,-97.1407	0/1:84:62,22:62:2220:22:788:-32.4969,0,-174.778	0/0:143:143,0:143:5063:0:0:0,-43.0473,-455.799	0/1:8:4,4:4:140:4:144:-8.62054,0,-10.5363	0/0:67:67,0:67:2368:0:0:0,-20.169,-213.375	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.782	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:169:168,0:168:5983:0:0:0,-50.573,-538.203	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2872	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.172	0/0:56:56,0:56:1971:0:0:0,-16.8577,-177.608	0/1:3:2,1:2:72:1:36:-2.07766,0,-5.93363	0/1:206:105,101:105:3750:101:3595:-199.132,0,-275.653	0/0:151:150,1:150:5356:1:36:0,-42.4748,-478.814	0/1:65:47,18:47:1651:18:640:-29.0198,0,-129.307	0/1:65:53,12:53:1819:12:413:-11.9637,0,-144.3	0/0:134:134,0:134:4768:0:0:0,-40.338,-429.267	0/1:94:36,58:36:1296:58:2068:-126.511,0,-88.6247	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:45:45,0:45:1574:0:0:0,-13.5463,-141.949	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:25:22,3:22:792:3:108:-0.67133,0,-64.0753	0/0:96:96,0:96:3406:0:0:0,-28.8989,-306.756	0/1:76:47,29:47:1680:29:1018:-55.9624,0,-128.609	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.733	0/1:186:105,80:105:3721:80:2856:-156.03,0,-279.042	0/1:60:43,17:43:1531:17:599:-27.2656,0,-120.02	0/0:118:117,1:117:4156:1:36:0,-31.9233,-370.625	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:125:125,0:125:4408:0:0:0,-37.6287,-396.893	0/0:90:90,0:90:3208:0:0:0,-27.0927,-288.939	0/0:212:212,0:212:7550:0:0:0,-63.8184,-679.484	0/1:59:28,31:28:1004:31:1112:-63.6874,0,-72.9151	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:38:26,12:26:920:12:424:-20.8067,0,-71.6708	0/1:74:38,36:38:1343:36:1281:-72.2447,0,-98.8704	0/1:12:5,7:5:176:7:244:-15.5137,0,-12.5727	0/1:42:25,17:25:858:17:599:-31.8968,0,-64.8893	0/1:32:17,15:17:592:15:527:-29.4068,0,-43.9734	0/1:20:14,6:14:500:6:201:-9.51933,0,-39.3156	0/1:45:25,20:25:883:20:720:-40.4053,0,-66.2407	0/1:37:10,27:10:356:27:968:-61.4555,0,-21.2431	0/0:173:172,1:172:6111:1:36:0,-48.4799,-546.432	0/0:83:83,0:83:2938:0:0:0,-24.9855,-264.655
chr06	30658630	.	T	A	104332	PASS	AB=0.532554;ABP=30.5797;AC=142;AF=0.755319;AN=188;AO=4924;CIGAR=1X;DP=6333;DPB=6333;DPRA=0;EPP=10660.6;EPPR=3038.75;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.958;MQMR=59.9516;NS=94;NUMALT=1;ODDS=2.88928;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175790;QR=50382;RO=1406;RPL=4920;RPP=10660.6;RPPR=3038.75;RPR=4;RUN=1;SAF=0;SAP=10695.3;SAR=4924;SRF=0;SRP=3056.1;SRR=1406;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:4,47:4:144:47:1674:-137.633,-2.03891,0	0/1:48:26,22:26:936:22:792:-57.1562,0,-69.9196	0/1:72:32,40:32:1144:40:1427:-107.053,0,-81.5954	1/1:237:0,237:0:0:237:8456:-761.042,-71.3441,0	1/1:58:0,58:0:0:58:2081:-187.56,-17.4597,0	1/1:25:0,25:0:0:25:886:-80.0578,-7.52575,0	1/1:77:0,77:0:0:77:2754:-248.101,-23.1793,0	0/1:74:39,35:39:1381:35:1252:-90.7089,0,-102.311	1/1:108:0,108:0:0:108:3853:-346.966,-32.5112,0	0/1:105:56,49:56:2012:49:1760:-127.076,0,-149.375	0/1:32:15,17:15:540:17:594:-44.1526,0,-39.2954	1/1:98:0,98:0:0:98:3500:-315.18,-29.5009,0	1/1:62:0,62:0:0:62:2206:-198.717,-18.6639,0	0/1:52:23,29:23:824:29:1040:-78.2608,0,-58.8298	0/1:65:33,32:33:1188:32:1140:-83.3413,0,-87.6616	1/1:38:0,38:0:0:38:1360:-122.696,-11.4391,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:22:0,22:0:0:22:764:-69.0768,-6.62266,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	1/1:101:0,101:0:0:101:3601:-324.296,-30.404,0	1/1:163:0,161:0:0:161:5768:-518.873,-48.4658,0	0/1:64:30,34:30:1076:34:1216:-90.4806,0,-77.8869	0/1:68:31,37:31:1108:37:1304:-97.1886,0,-79.561	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	1/1:55:0,55:0:0:55:1957:-176.404,-16.5567,0	0/1:173:75,98:75:2692:98:3488:-262.052,0,-190.446	0/1:162:84,78:84:3012:78:2796:-203.113,0,-222.541	0/1:22:8,14:8:284:14:500:-38.7135,0,-19.2807	0/1:210:96,114:96:3413:114:4069:-301.73,0,-244.168	0/1:87:41,46:41:1461:46:1644:-122.059,0,-105.594	0/1:89:36,53:36:1284:53:1899:-144.396,0,-89.0717	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26423	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:211:0,211:0:0:211:7524:-677.201,-63.5173,0	0/1:36:10,26:10:360:26:932:-73.3618,0,-21.9072	0/1:38:17,21:17:612:21:748:-56.2062,0,-43.9743	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:62:36,26:36:1296:26:928:-65.1744,0,-98.2801	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:115:37,78:37:1332:78:2779:-215.733,0,-85.5639	0/1:53:31,22:31:1112:22:792:-55.6511,0,-84.4368	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:130:1,129:1:36:129:4600:-410.562,-35.5356,0	0/1:54:16,38:16:576:38:1357:-106.174,0,-35.9194	1/1:115:0,115:0:0:115:4096:-368.825,-34.6185,0	0/1:63:19,44:19:680:44:1562:-121.905,0,-42.5643	0/1:80:38,42:38:1368:42:1499:-111.121,0,-99.3384	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:61:0,61:0:0:61:2161:-194.756,-18.3628,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:73:0,73:0:0:73:2604:-234.608,-21.9752,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:62:0,62:0:0:62:2197:-197.994,-18.6639,0	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:199:103,96:103:3679:96:3437:-249.638,0,-271.408	1/1:135:0,135:0:0:135:4837:-435.482,-40.6391,0	0/1:59:9,50:9:324:50:1783:-142.991,0,-11.7451	0/1:41:17,24:17:612:24:856:-65.0189,0,-43.0712	1/1:109:1,108:1:36:108:3856:-343.636,-29.214,0	0/1:82:46,36:46:1652:36:1284:-91.179,0,-124.284	1/1:19:0,19:0:0:19:675:-61.0776,-5.71957,0	1/1:44:0,44:0:0:44:1569:-141.5,-13.2453,0	1/1:30:0,30:0:0:30:1065:-96.1136,-9.0309,0	0/1:32:15,17:15:540:17:599:-44.6043,0,-39.3036	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:84:33,51:33:1184:51:1832:-139.874,0,-81.5818	1/1:132:0,132:0:0:132:4706:-423.676,-39.736,0	0/1:109:58,50:58:2080:50:1777:-127.34,0,-154.599	0/1:58:20,38:20:720:38:1347:-104.07,0,-47.669	1/1:72:1,71:1:36:71:2544:-225.612,-18.0759,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:88:0,88:0:0:88:3139:-282.736,-26.4906,0	1/1:64:0,64:0:0:64:2276:-205.101,-19.2659,0	1/1:189:0,189:0:0:189:6720:-604.863,-56.8947,0	0/1:52:32,20:32:1148:20:716:-49.1142,0,-87.9763	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:59:31,28:31:1116:28:1004:-72.9151,0,-82.9905	0/1:96:47,49:47:1676:49:1760:-129.785,0,-122.228	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:59:30,29:30:1080:29:1044:-76.514,0,-79.7525	0/1:51:25,26:25:900:26:936:-69.2069,0,-65.9685	0/1:22:9,13:9:320:13:468:-35.837,0,-22.5197	0/1:51:30,21:30:1076:21:756:-53.0147,0,-81.8003	0/1:52:34,18:34:1220:18:648:-42.9983,0,-94.4532	1/1:104:0,104:0:0:104:3711:-334.192,-31.3071,0	1/1:91:0,91:0:0:91:3242:-292.001,-27.3937,0
chr06	30658731	.	GTCTT	ATCTC,ATCTT	232984	PASS	AB=0.463532,0.530926;ABP=67.6281,49.4815;AC=140,48;AF=0.744681,0.255319;AN=188;AO=7944,2978;CIGAR=1X3M1X,1X4M;DP=10986;DPB=10986.2;DPRA=0,1.06825;EPP=17218.5,6452.3;EPPR=9.52472;GTI=3;LEN=5,1;MEANALT=2.11702,2.52727;MQM=59.0764,59.9124;MQMR=60;NS=94;NUMALT=2;ODDS=0.269142;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=281468,106547;QR=107;RO=3;RPL=4,2;RPP=17218.5,6452.3;RPPR=9.52472;RPR=7940,2976;RUN=1,1;SAF=0,0;SAP=17253.2,6469.66;SAR=7944,2978;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,28,25:0:0:28,25:973,867:-149.774,-70.8165,-62.3877,-79.3037,0,-71.7779	1/2:207:0,106,101:0:0:106,101:3733,3619:-598.668,-295.51,-263.6,-303.513,0,-273.109	1/2:110:0,52,58:0:0:52,58:1811,2073:-316.303,-169.378,-153.724,-147.277,0,-129.818	1/1:234:0,232,1:0:0:232,1:8248,36:-741.429,-69.839,0,-738.492,-66.9006,-738.191	1/1:126:0,126,0:0:0:126,0:4480,0:-403.072,-37.9298,0,-403.072,-37.9298,-403.072	1/1:107:0,107,0:0:0:107,0:3794,0:-340.588,-32.2102,0,-340.588,-32.2102,-340.588	1/1:207:0,206,0:0:0:206,0:7315,0:-656.891,-62.0122,0,-656.891,-62.0122,-656.891	1/2:237:0,119,117:0:0:119,117:4223,4183:-684.979,-341.064,-305.241,-343.912,0,-308.691	1/1:106:0,105,1:0:0:105,1:3711,36:-333.508,-31.6082,0,-330.571,-28.3109,-330.27	1/2:169:0,79,90:0:0:79,90:2741,3213:-484.182,-262.167,-238.385,-222.366,0,-195.274	1/2:32:0,13,18:0:0:13,18:459,648:-90.1565,-52.8844,-48.971,-37.2784,0,-31.8599	1/1:68:0,68,0:0:0:68,0:2415,0:-217.22,-20.47,0,-217.22,-20.47,-217.22	1/1:76:0,76,0:0:0:76,0:2681,0:-241.153,-22.8783,0,-241.153,-22.8783,-241.153	1/2:80:0,40,39:0:0:40,39:1416,1400:-229.475,-114.202,-102.161,-115.272,0,-103.532	1/2:60:0,24,36:0:0:24,36:863,1296:-176.515,-106.107,-98.8821,-70.7677,0,-59.9307	1/1:38:0,38,0:0:0:38,0:1345,0:-121.283,-11.4391,0,-121.283,-11.4391,-121.283	1/1:65:0,64,0:0:0:64,0:2280,0:-205.004,-19.2659,0,-205.004,-19.2659,-205.004	1/1:62:0,62,0:0:0:62,0:2219,0:-199.851,-18.6639,0,-199.851,-18.6639,-199.851	1/2:38:0,20,17:0:0:20,17:714,612:-108.245,-50.0343,-44.0137,-58.3057,0,-53.1882	1/1:316:0,315,0:0:0:315,0:11147,0:-1002.02,-94.8245,0,-1002.02,-94.8245,-1002.02	1/1:129:0,128,0:0:0:128,0:4503,0:-404.873,-38.5318,0,-404.873,-38.5318,-404.873	1/2:142:0,60,81:0:0:60,81:2113,2897:-408.297,-236.279,-218.217,-172.072,0,-147.689	1/2:78:0,31,47:0:0:31,47:1102,1662:-225.499,-135.713,-126.382,-90.1401,0,-75.9917	1/1:119:0,118,1:0:0:118,1:4204,36:-378.006,-35.5215,0,-375.068,-32.2243,-374.767	1/1:109:0,108,1:0:0:108,1:3805,36:-341.892,-32.5112,0,-338.954,-29.214,-338.653	1/2:299:0,132,166:0:0:132,166:4677,5929:-864.269,-483.398,-443.662,-380.877,0,-330.906	1/2:296:0,124,171:0:0:124,171:4364,6124:-854.299,-499.423,-462.095,-354.874,0,-303.397	1/2:27:0,13,14:0:0:13,14:468,504:-79.6654,-41.4837,-37.5703,-38.5415,0,-34.3271	1/2:286:0,143,140:0:0:143,140:5093,4978:-820.709,-405.652,-362.604,-415.053,0,-372.909	1/2:206:0,93,112:0:0:93,112:3296,4008:-595.315,-326.844,-298.848,-268.477,0,-234.762	1/2:108:0,58,50:0:0:58,50:2053,1792:-313.7,-146.511,-129.051,-167.545,0,-152.493	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:11:0,8,3:0:0:8,3:287,108:-32.5808,-9.17208,-6.76384,-23.7682,0,-22.8652	1/1:3:0,3,0:0:0:3,0:103,0:-9.58969,-0.90309,0,-9.58969,-0.90309,-9.58969	1/1:3:0,3,0:0:0:3,0:107,0:-9.98217,-0.90309,0,-9.98217,-0.90309,-9.98217	1/1:5:0,5,0:0:0:5,0:177,0:-15.9522,-1.50515,0,-15.9522,-1.50515,-15.9522	1/1:194:0,193,0:0:0:193,0:6871,0:-617.223,-58.0988,0,-617.223,-58.0988,-617.223	1/2:221:0,127,93:0:0:127,93:4515,3314:-637.998,-270.181,-231.95,-367.874,0,-339.878	1/2:60:0,38,20:0:0:38,20:1357,720:-169.264,-58.7797,-47.3405,-110.515,0,-104.494	1/2:6:0,5,1:0:0:5,1:171,36:-17.1607,-3.29724,-1.79209,-14.2203,0,-13.9193	1/2:202:0,91,111:0:0:91,111:3234,3973:-587.143,-324.317,-296.923,-263.182,0,-229.768	1/2:28:0,18,10:0:0:18,10:642,360:-82.0668,-29.734,-24.3155,-52.6914,0,-49.6811	1/2:174:0,82,92:0:0:82,92:2884,3282:-502.482,-267.845,-243.161,-234.99,0,-207.296	1/2:46:0,19,27:0:0:19,27:656,968:-132.595,-79.3096,-73.59,-53.6363,0,-45.5085	1/1:56:0,56,0:0:0:56,0:1905,0:-171.665,-16.8577,0,-171.665,-16.8577,-171.665	1/1:182:0,179,0:0:0:179,0:6365,0:-572.462,-53.8844,0,-572.462,-53.8844,-572.462	1/2:190:0,86,104:0:0:86,104:3054,3728:-553.059,-304.326,-278.438,-249.089,0,-217.782	1/1:216:0,214,1:0:0:214,1:7591,36:-682.329,-64.4204,0,-679.391,-61.482,-679.09	1/2:146:0,67,79:0:0:67,79:2371,2844:-425.447,-232.416,-212.247,-193.388,0,-169.607	1/2:154:0,86,67:0:0:86,67:3060,2404:-445.482,-196.146,-170.257,-249.393,0,-229.224	1/1:228:0,227,0:0:0:227,0:8039,0:-723.081,-68.3338,0,-723.081,-68.3338,-723.081	1/2:10:0,5,5:0:0:5,5:178,180:-29.5526,-15.0469,-13.5418,-14.8635,0,-13.3583	1/1:217:0,217,0:0:0:217,0:7724,0:-691.415,-65.3235,0,-691.415,-65.3235,-691.415	1/1:41:0,41,0:0:0:41,0:1461,0:-131.759,-12.3422,0,-131.759,-12.3422,-131.759	1/1:21:0,21,0:0:0:21,0:739,0:-66.6405,-6.32163,0,-66.6405,-6.32163,-66.6405	1/1:186:0,185,0:0:0:185,0:6521,0:-586.188,-55.6906,0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chr06	30725567	.	G	A	111973	PASS	AB=0.484054;ABP=9.24309;AC=138;AF=0.734043;AN=188;AO=4169;CIGAR=1X;DP=5639;DPB=5639;DPRA=24.4957;EPP=3.03582;EPPR=3.0103;GTI=0;LEN=1;MEANALT=1;MQM=59.9981;MQMR=59.9796;NS=94;NUMALT=1;ODDS=2.69273;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148817;QR=52274;RO=1470;RPL=4169;RPP=9055.88;RPPR=3195.07;RPR=0;RUN=1;SAF=2081;SAP=3.03582;SAR=2088;SRF=735;SRP=3.0103;SRR=735;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:17,11:17:608:11:396:-27.5539,0,-46.6232	0/1:44:13,31:13:464:31:1108:-86.7857,0,-28.8522	0/1:74:34,40:34:1216:40:1429:-106.631,0,-87.4703	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:44:1,43:1:36:43:1523:-133.764,-9.64705,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	0/1:70:32,38:32:1144:38:1353:-100.996,0,-82.1974	1/1:61:0,61:0:0:61:2176:-196.107,-18.3628,0	0/1:30:12,18:12:419:18:641:-48.9883,0,-29.0118	0/1:94:57,37:57:2043:37:1316:-90.445,0,-155.844	1/1:144:0,144:0:0:144:5152:-463.822,-43.3483,0	1/1:134:1,133:1:36:133:4769:-425.768,-36.7397,0	0/1:95:46,49:46:1632:49:1752:-129.366,0,-118.571	0/1:103:49,54:49:1748:54:1936:-143.51,0,-126.598	1/1:79:0,79:0:0:79:2827:-254.667,-23.7814,0	1/1:79:1,78:1:36:78:2796:-248.282,-20.1831,0	1/1:88:0,88:0:0:88:3147:-283.455,-26.4906,0	0/1:53:29,24:29:1035:24:860:-61.7672,0,-77.5085	1/1:57:1,56:1:36:56:2004:-177.035,-13.5604,0	1/1:75:0,75:0:0:75:2676:-241.086,-22.5773,0	0/1:15:10,5:10:356:5:180:-12.0366,0,-27.8658	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6107	1/1:51:0,51:0:0:51:1806:-162.821,-15.3525,0	1/1:31:0,31:0:0:31:1116:-100.744,-9.33193,0	0/1:88:38,50:38:1340:50:1777:-133.72,0,-94.4066	0/1:109:61,48:61:2192:48:1712:-121.553,0,-164.733	0/1:65:29,36:29:1027:36:1292:-97.0168,0,-73.1752	0/1:89:46,43:46:1635:43:1501:-108.588,0,-120.646	0/1:28:19,9:19:676:9:324:-21.077,0,-52.7392	0/1:55:29,26:29:1031:26:936:-68.0028,0,-76.546	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:243:2,241:2:72:241:8598:-766.982,-66.3136,0	0/1:30:16,14:16:563:14:504:-36.6672,0,-41.9683	0/1:90:54,36:54:1882:36:1274:-87.8688,0,-142.547	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:52:28,24:28:992:24:864:-62.429,0,-73.9408	0/1:42:22,20:22:788:20:720:-52.4855,0,-58.6015	0/1:47:23,24:23:816:24:864:-63.9342,0,-59.6133	0/1:103:47,56:47:1666:56:2004:-149.627,0,-119.22	1/1:78:0,78:0:0:78:2771:-249.632,-23.4803,0	1/1:35:0,35:0:0:35:1238:-111.723,-10.5361,0	0/1:39:15,24:15:536:24:860:-65.9817,0,-36.8346	1/1:69:0,69:0:0:69:2424:-218.412,-20.7711,0	0/1:34:16,18:16:572:18:648:-48.4169,0,-41.5784	0/1:69:34,35:34:1202:35:1260:-92.9344,0,-87.7132	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:47:0,47:0:0:47:1673:-150.855,-14.1484,0	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:62:0,62:0:0:62:2208:-198.985,-18.6639,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:55:0,55:0:0:55:1968:-177.394,-16.5567,0	1/1:104:0,104:0:0:104:3728:-335.721,-31.3071,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:43:22,21:22:788:21:752:-55.062,0,-58.3005	1/1:65:1,64:1:36:64:2296:-203.303,-15.9687,0	0/1:27:10,17:10:356:17:612:-47.2856,0,-24.2534	0/1:45:24,21:24:837:21:756:-54.8209,0,-62.0991	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:46:35,11:35:1256:11:396:-22.1354,0,-99.4979	1/1:54:1,53:1:36:53:1885:-166.329,-12.6573,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:117:0,117:0:0:117:4181:-376.471,-35.2205,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:17:0,17:0:0:17:598:-54.1475,-5.11751,0	0/1:40:21,19:21:743:19:680:-49.488,0,-55.1521	1/1:86:0,86:0:0:86:3043:-274.099,-25.8886,0	0/1:42:18,24:18:644:24:860:-65.0786,0,-45.6473	0/1:47:30,17:30:1076:17:608:-40.9036,0,-83.0044	1/1:38:0,38:0:0:38:1353:-122.068,-11.4391,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:60:0,60:0:0:60:2151:-193.857,-18.0618,0	1/1:41:1,40:1:36:40:1432:-125.579,-8.74396,0	1/1:103:0,103:0:0:103:3680:-331.404,-31.0061,0	0/1:110:60,50:60:2139:50:1776:-127.007,0,-159.664	1/1:102:0,102:0:0:102:3630:-326.906,-30.7051,0	0/1:140:66,74:66:2324:74:2624:-194.261,0,-167.275	0/1:207:113,94:113:4018:94:3357:-240.032,0,-299.492	0/1:50:24,26:24:860:26:924:-68.4262,0,-62.6703	0/1:88:46,42:46:1644:42:1479:-106.913,0,-121.758	0/1:96:46,50:46:1639:50:1795:-132.934,0,-118.899	0/1:41:17,24:17:603:24:842:-63.7548,0,-42.2573	0/1:86:47,39:47:1662:39:1400:-100.411,0,-123.977	0/1:106:72,34:72:2558:34:1202:-76.5751,0,-198.561	1/1:65:0,65:0:0:65:2321:-209.151,-19.567,0	1/1:171:0,171:0:0:171:6100:-549.099,-51.4761,0
chr06	30726038	.	G	A	57164.2	PASS	AB=0.546512;ABP=32.0979;AC=140;AF=0.752688;AN=186;AO=2690;CIGAR=1X;DP=3395;DPB=3395;DPRA=0;EPP=5826.91;EPPR=1533.9;GTI=2;LEN=1;MEANALT=1;MQM=59.9959;MQMR=59.983;NS=93;NUMALT=1;ODDS=0.934101;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96106;QR=25183;RO=705;RPL=2688;RPP=5826.91;RPPR=1533.9;RPR=2;RUN=1;SAF=2690;SAP=5844.27;SAR=0;SRF=705;SRP=1533.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:27:10,17:10:360:17:587:-45.0249,0,-24.6165	0/1:41:15,26:15:531:26:936:-72.2172,0,-35.7797	1/1:108:1,107:1:36:107:3817:-340.128,-28.913,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:42:14,28:14:504:28:989:-76.6788,0,-33.0548	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:36:15,21:15:540:21:756:-57.5301,0,-38.0995	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	1/1:46:0,46:0:0:46:1641:-147.978,-13.8474,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	1/1:27:0,27:0:0:27:955:-86.2648,-8.12781,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:17:9,8:9:301:8:288:-21.1499,0,-22.2962	1/1:58:0,58:0:0:58:2070:-186.571,-17.4597,0	1/1:72:0,72:0:0:72:2565:-231.099,-21.6742,0	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/1:32:11,21:11:396:21:752:-58.3733,0,-26.3498	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:39:0,39:0:0:39:1389:-125.307,-11.7402,0	0/1:63:22,41:22:788:41:1472:-113.811,0,-52.2799	0/1:83:38,45:38:1353:45:1593:-118.673,0,-97.0829	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/1:67:28,39:28:993:39:1404:-106.49,0,-69.5135	0/1:45:17,28:17:612:28:1008:-77.49,0,-41.8671	0/1:66:32,34:32:1140:34:1224:-90.5991,0,-83.0412	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	0/1:65:24,41:24:843:41:1468:-112.849,0,-56.621	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	.:.:.:.:.:.:.:.	0/1:41:18,23:18:644:23:820:-61.7797,0,-45.9484	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/1:61:36,25:36:1284:25:900:-62.9582,0,-97.4987	0/1:22:11,11:11:392:11:394:-29.1788,0,-28.9974	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:82:0,82:0:0:82:2906:-261.774,-24.6845,0	0/1:19:13,6:13:468:6:208:-13.3395,0,-36.7401	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	0/1:26:10,16:10:352:16:557:-42.6288,0,-24.1896	0/1:42:18,24:18:644:24:856:-64.7178,0,-45.6473	1/1:81:0,81:0:0:81:2892:-260.515,-24.3834,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:28:0,28:0:0:28:995:-89.864,-8.42884,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:54:0,54:0:0:54:1921:-173.165,-16.2556,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	1/1:45:0,45:0:0:45:1597:-144.018,-13.5464,0	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/1:61:27,34:27:968:34:1216:-91.3837,0,-69.0745	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	0/1:30:11,19:11:392:19:676:-52.1371,0,-26.5892	0/1:22:14,8:14:504:8:284:-19.2807,0,-39.0754	1/1:118:0,118:0:0:118:4197:-377.912,-35.5215,0	0/1:83:53,30:53:1887:30:1076:-72.1674,0,-145.122	1/1:13:0,13:0:0:13:444:-40.2841,-3.91339,0	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	1/1:30:0,30:0:0:30:1061:-95.7994,-9.0309,0	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	1/1:92:1,91:1:36:91:3263:-290.292,-24.0965,0	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	0/1:54:19,35:19:684:35:1256:-97.0897,0,-45.6347	0/1:42:17,25:17:612:25:896:-68.3171,0,-42.7702	1/1:40:0,40:0:0:40:1416:-127.735,-12.0412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	0/1:24:11,13:11:392:13:464:-34.8728,0,-28.3953	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:15:6,9:6:212:9:320:-24.6269,0,-14.9093	0/1:40:22,18:22:783:18:640:-45.8881,0,-58.7517	1/1:14:1,13:1:32:13:468:-39.2603,-1.01511,0	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/1:29:15,14:15:536:14:504:-36.9682,0,-39.8449	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:43:17,26:17:612:26:936:-71.6152,0,-42.4691	0/1:37:24,13:24:864:13:468:-31.3215,0,-66.9445	1/1:21:0,21:0:0:21:744:-67.283,-6.32163,0	1/1:40:0,40:0:0:40:1431:-129.087,-12.0412,0
chr06	30735442	.	A	C	36770	PASS	AB=0.513325;ABP=9.434;AC=49;AF=0.260638;AN=188;AO=2153;CIGAR=1X;DP=8109;DPB=8109;DPRA=1.05795;EPP=4565.96;EPPR=12653.3;GTI=0;LEN=1;MEANALT=1;MQM=55.614;MQMR=59.9861;NS=94;NUMALT=1;ODDS=3.48142;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76830;QR=213342;RO=5953;RPL=13;RPP=4565.96;RPPR=12661.9;RPR=2140;RUN=1;SAF=2153;SAP=4678.19;SAR=0;SRF=5952;SRP=12921.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:36,26:36:1292:26:919:-64.2055,0,-97.9199	0/1:72:25,47:25:896:47:1684:-129.865,0,-59.2862	0/1:151:88,63:88:3160:63:2235:-155.603,0,-239.169	0/0:164:164,0:164:5877:0:0:0,-49.3689,-529.038	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.644	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:159:68,91:68:2436:91:3255:-244.756,0,-171.632	0/0:122:122,0:122:4364:0:0:0,-36.7257,-392.935	0/1:73:44,29:44:1580:29:1036:-71.5495,0,-120.516	0/1:61:33,28:33:1188:28:995:-71.3638,0,-88.8634	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.371	0/0:95:94,0:94:3376:0:0:0,-28.2968,-303.695	0/1:64:35,29:35:1256:29:1044:-74.5608,0,-94.0794	0/1:78:42,36:42:1503:36:1292:-93.0584,0,-112.083	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.741	0/1:20:11,9:11:396:9:324:-23.4291,0,-29.9621	0/0:163:163,0:163:5860:0:0:0,-49.0679,-527.508	0/0:166:166,0:166:5936:0:0:0,-49.971,-534.349	0/1:84:25,59:25:884:59:2100:-163.657,0,-54.5918	0/1:104:53,51:53:1900:51:1824:-132.992,0,-139.971	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/1:250:135,115:135:4818:115:4095:-293.378,0,-358.515	0/1:335:160,175:160:5717:175:6259:-461.276,0,-413.802	0/1:38:25,13:25:900:13:464:-30.6191,0,-69.8819	0/1:200:88,112:88:3160:112:3990:-298.719,0,-224.418	0/1:92:52,40:52:1872:40:1436:-101.403,0,-141.064	0/1:65:32,33:32:1125:33:1180:-86.9004,0,-81.9891	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	0/0:18:17,1:17:604:1:32:0,-2.22071,-51.4928	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:206:206,0:206:7361:0:0:0,-62.0122,-662.535	0/1:112:49,63:49:1756:63:2244:-167.965,0,-124.609	0/1:46:16,30:16:572:30:1076:-82.5075,0,-37.966	0/1:9:7,2:7:248:2:72:-4.11742,0,-19.9549	0/1:74:34,40:34:1209:40:1440:-107.232,0,-86.8379	0/1:33:11,22:11:396:22:783:-60.7022,0,-26.0488	0/1:146:70,76:70:2516:76:2712:-199.662,0,-182.741	0/1:71:29,42:29:1044:42:1504:-114.231,0,-72.9017	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:135:135,0:135:4856:0:0:0,-40.639,-437.191	0/1:155:80,75:80:2868:75:2667:-191.365,0,-211.697	0/0:203:203,0:203:7261:0:0:0,-61.1091,-653.541	0/1:109:46,63:46:1656:63:2249:-169.67,0,-116.516	0/1:99:50,49:50:1796:49:1716:-124.79,0,-132.12	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	1/1:5:0,5:0:0:5:176:-16.18,-1.50515,0	0/0:97:97,0:97:3473:0:0:0,-29.1999,-312.78	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:132:132,0:132:4714:0:0:0,-39.736,-424.407	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.249	0/0:86:85,1:85:3052:1:36:0,-22.2913,-271.312	0/1:6:2,4:2:72:4:144:-11.4162,0,-5.03054	0/1:167:82,85:82:2948:85:3015:-221.157,0,-215.281	0/0:118:116,2:116:4172:2:72:0,-28.6867,-368.826	0/1:57:36,21:36:1292:21:740:-49.5505,0,-99.4251	0/1:79:37,42:37:1313:42:1487:-110.088,0,-94.6883	0/0:158:155,3:155:5548:3:108:0,-37.7687,-489.65	0/1:164:56,108:56:2016:108:3863:-297.99,0,-132.344	0/0:41:40,1:40:1436:1:36:0,-8.74766,-125.943	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.102	0/1:17:11,6:11:396:6:216:-14.6675,0,-30.8652	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/1:71:41,30:41:1476:30:1072:-74.8339,0,-111.763	0/0:138:138,0:138:4940:0:0:0,-41.5421,-444.75	0/1:137:79,58:79:2840:58:2071:-145.155,0,-214.596	0/1:125:71,54:71:2529:54:1928:-135.139,0,-190.231	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:92:91,1:91:3249:1:36:0,-24.1002,-289.031	0/0:123:123,0:123:4397:0:0:0,-37.0267,-395.902	0/0:213:213,0:213:7633:0:0:0,-64.1194,-687.004	0/1:51:31,20:31:1116:20:711:-48.9426,0,-85.3992	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:56:28,28:28:1008:28:980:-71.603,0,-74.1787	0/1:121:56,65:56:2012:65:2335:-173.757,0,-144.928	0/1:26:12,14:12:432:14:504:-37.7905,0,-31.3944	0/1:69:32,37:32:1144:37:1332:-98.9984,0,-82.4984	0/1:73:32,41:32:1152:41:1461:-109.056,0,-82.015	0/1:30:12,18:12:432:18:648:-49.4309,0,-30.1903	0/1:67:40,27:40:1436:27:972:-67.3928,0,-109.369	0/1:87:25,62:25:896:62:2224:-173.665,0,-54.7707	0/0:113:112,0:112:4001:0:0:0,-33.7154,-360.067	0/0:100:99,0:99:3555:0:0:0,-29.802,-319.797
chr06	30784943	.	GT	AG,AT	496118	PASS	AB=0.534921,0.463855;ABP=115.542,123.566;AC=139,49;AF=0.739362,0.260638;AN=188;AO=18036,4940;CIGAR=2X,1X1M;DP=22997;DPB=22997.5;DPRA=0,1.81432;EPP=39106.9,10591.6;EPPR=7.35324;GTI=1;LEN=2,1;MEANALT=1.81915,2.27586;MQM=59.4139,59.9741;MQMR=60;NS=94;NUMALT=2;ODDS=1.97376;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=641083,176759;QR=61;RO=2;RPL=7,16;RPP=39106.9,10591.6;RPPR=7.35324;RPR=18029,4924;RUN=1,1;SAF=18036,4940;SAP=39167.7,10730.1;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:69:0,35,33:0:0:35,33:1245,1184:-198.022,-96.5713,-86.0352,-101.448,0,-91.5145	1/2:82:0,50,32:0:0:50,32:1750,1148:-236.125,-93.9969,-78.9454,-142.483,0,-132.85	1/2:105:0,46,59:0:0:46,59:1654,2112:-307.498,-172.588,-158.741,-135.269,0,-117.508	1/1:205:0,205,0:0:0:205,0:7247,0:-652.118,-61.7112,0,-652.118,-61.7112,-652.118	1/1:73:0,72,1:0:0:72,1:2526,36:-227.076,-21.6742,0,-224.138,-18.3769,-223.837	1/1:32:0,32,0:0:0:32,0:1150,0:-103.81,-9.63296,0,-103.81,-9.63296,-103.81	1/1:87:0,87,0:0:0:87,0:3102,0:-279.399,-26.1896,0,-279.399,-26.1896,-279.399	1/2:124:0,67,57:0:0:67,57:2352,2044:-357.596,-167.073,-146.904,-190.877,0,-173.718	1/1:162:0,162,0:0:0:162,0:5787,0:-520.854,-48.7669,0,-520.854,-48.7669,-520.854	1/2:76:0,42,34:0:0:42,34:1508,1220:-222.878,-99.8718,-87.2285,-123.365,0,-113.13	1/2:286:1,124,160:1:25:124,160:4380,5721:-820.929,-464.589,-429.209,-354.743,0,-308.526	1/1:84:0,84,0:0:0:84,0:2980,0:-268.406,-25.2865,0,-268.406,-25.2865,-268.406	1/1:52:0,52,0:0:0:52,0:1844,0:-166.168,-15.6536,0,-166.168,-15.6536,-166.168	1/2:42:0,20,22:0:0:20,22:718,779:-122.37,-63.8094,-57.7888,-58.9171,0,-52.2944	1/2:49:0,24,25:0:0:24,25:858,896:-143.305,-73.4346,-66.2099,-70.2281,0,-62.7023	1/1:51:0,51,0:0:0:51,0:1808,0:-162.924,-15.3525,0,-162.924,-15.3525,-162.924	1/1:37:0,37,0:0:0:37,0:1319,0:-118.976,-11.1381,0,-118.976,-11.1381,-118.976	1/1:31:0,31,0:0:0:31,0:1112,0:-100.341,-9.33193,0,-100.341,-9.33193,-100.341	1/2:108:0,46,62:0:0:46,62:1624,2220:-313.614,-181.401,-167.553,-132.569,0,-113.905	1/1:171:0,171,0:0:0:171,0:6082,0:-547.439,-51.4761,0,-547.439,-51.4761,-547.439	1/1:143:0,143,0:0:0:143,0:5041,0:-453.701,-43.0473,0,-453.701,-43.0473,-453.701	1/2:124:0,33,91:0:0:33,91:1173,3225:-358.665,-263.079,-253.145,-95.9417,0,-68.548	1/2:136:0,80,55:0:0:80,55:2834,1967:-391.243,-160.387,-136.305,-230.852,0,-214.295	1/1:88:0,88,0:0:0:88,0:3139,0:-282.717,-26.4906,0,-282.717,-26.4906,-282.717	1/2:75:0,55,20:0:0:55,20:1965,716:-218.816,-58.7471,-42.1905,-160.427,0,-154.406	1/2:296:0,171,124:0:0:171,124:6076,4435:-856.833,-361.741,-310.265,-495.198,0,-457.87	1/2:260:0,153,107:0:0:153,107:5430,3807:-752.977,-310.62,-264.562,-442.712,0,-410.502	1/2:28:0,19,9:0:0:19,9:682,309:-81.0735,-25.4314,-19.7119,-55.9903,0,-53.281	1/2:264:0,129,135:0:0:129,135:4589,4799:-765.405,-391.425,-352.592,-374.336,0,-333.697	1/2:185:0,106,79:0:0:106,79:3764,2810:-536.035,-229.355,-197.446,-307.035,0,-283.253	1/2:159:0,81,78:0:0:81,78:2879,2792:-462.497,-228.003,-203.62,-234.85,0,-211.37	1/2:950:0,565,384:0:0:565,384:20105,13730:-2757.9,-1119.52,-949.442,-1638.37,0,-1522.77	1/2:922:0,574,347:0:0:574,347:20397,12421:-2674.53,-1012.93,-840.135,-1661.62,0,-1557.16	1/1:1148:0,1146,1:0:0:1146,1:40756,36:-3665.09,-344.98,0,-3662.16,-341.978,-3661.85	1/1:1844:0,1843,1:0:0:1843,1:65485,36:-5886.56,-554.798,0,-5883.62,-551.501,-5883.32	1/1:1380:0,1377,1:0:0:1377,1:48893,36:-4395.3,-414.518,0,-4392.55,-411.769,-4392.25	1/1:158:0,158,0:0:0:158,0:5632,0:-506.979,-47.5627,0,-506.979,-47.5627,-506.979	1/2:150:0,76,74:0:0:76,74:2681,2660:-435.638,-217.369,-194.491,-218.625,0,-196.349	1/2:250:0,129,120:0:0:129,120:4605,4312:-727.078,-351.88,-313.047,-375.304,0,-339.181	1/2:591:0,323,268:0:0:323,268:11514,9628:-1723.13,-785.786,-688.554,-937.702,0,-857.026	1/2:143:0,63,80:0:0:63,80:2242,2872:-417.341,-234.634,-215.669,-183.064,0,-158.981	1/2:167:0,76,91:0:0:76,91:2712,3260:-487.313,-266.227,-243.349,-221.444,0,-194.05	1/2:178:0,112,65:0:0:112,65:3947,2328:-511.129,-189.947,-156.232,-321.277,0,-301.71	1/2:25:0,11,14:0:0:11,14:394,504:-73.6123,-41.4833,-38.1719,-32.4878,0,-28.2734	1/1:51:0,51,0:0:0:51,0:1817,0:-163.802,-15.3525,0,-163.802,-15.3525,-163.802	1/1:153:0,153,0:0:0:153,0:5422,0:-488.036,-46.0576,0,-488.036,-46.0576,-488.036	1/2:116:0,63,53:0:0:63,53:2222,1885:-334.876,-153.972,-135.007,-181.258,0,-165.304	1/1:153:0,151,2:0:0:151,2:5401,72:-485.827,-45.4555,0,-479.952,-39.2209,-479.35	1/2:84:0,51,33:0:0:51,33:1800,1188:-243.65,-97.2946,-81.9421,-146.713,0,-136.779	1/2:143:0,81,62:0:0:81,62:2878,2219:-415.804,-181.311,-156.927,-234.85,0,-216.186	1/1:146:0,146,0:0:0:146,0:5218,0:-469.751,-43.9504,0,-469.751,-43.9504,-469.751	1/2:1116:0,560,556:0:0:560,556:19868,19904:-3241.79,-1623.45,-1454.88,-1618.69,0,-1451.32	1/1:120:0,120,0:0:0:120,0:4282,0:-385.129,-36.1236,0,-385.129,-36.1236,-385.129	1/1:86:0,86,0:0:0:86,0:3080,0:-277.395,-25.8886,0,-277.395,-25.8886,-277.395	1/1:591:0,591,0:0:0:591,0:20955,0:-1884.54,-177.909,0,-188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chr06	30786787	.	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chr06	30845984	.	C	T	77607.3	PASS	AB=0.550844;ABP=52.2511;AC=139;AF=0.739362;AN=188;AO=3764;CIGAR=1X;DP=4756;DPB=4756;DPRA=51.129;EPP=8167.75;EPPR=2154.94;GTI=2;LEN=1;MEANALT=1.01075;MQM=53.8199;MQMR=53.7568;NS=94;NUMALT=1;ODDS=2.39119;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132601;QR=35113;RO=991;RPL=1;RPP=8167.75;RPPR=2154.94;RPR=3763;RUN=1;SAF=0;SAP=8176.43;SAR=3764;SRF=0;SRP=2154.94;SRR=991;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:12,12:12:411:12:420:-30.3773,0,-29.9347	0/1:70:23,47:23:816:47:1659:-127.62,0,-51.7662	0/1:55:23,32:23:816:32:1148:-86.4322,0,-55.9173	1/1:144:0,144:0:0:144:5044:-451.88,-43.3483,0	1/1:52:0,52:0:0:52:1844:-165.271,-15.6536,0	1/1:39:0,39:0:0:39:1375:-123.495,-11.7402,0	1/1:104:0,104:0:0:104:3659:-328.726,-31.3071,0	0/1:71:31,40:31:1091:40:1420:-105.43,0,-76.6882	1/1:27:1,26:1:36:26:906:-77.3767,-4.53858,0	0/1:41:18,23:18:639:23:816:-61.2681,0,-45.4558	0/1:12:5,7:5:180:7:252:-19.23,0,-12.9278	1/1:20:0,20:0:0:20:720:-64.9732,-6.0206,0	1/1:26:0,26:0:0:26:928:-83.271,-7.82678,0	0/1:26:12,14:12:428:14:500:-37.4438,0,-30.8482	0/1:23:9,14:9:311:14:496:-37.9361,0,-21.286	1/1:13:0,13:0:0:13:460:-41.6807,-3.91339,0	1/1:17:0,17:0:0:17:612:-55.2741,-5.11751,0	1/1:23:0,23:0:0:23:820:-73.7618,-6.92369,0	0/1:10:4,6:4:144:6:203:-15.5533,0,-10.2698	1/1:146:0,146:0:0:146:5155:-462.876,-43.9504,0	1/1:88:0,88:0:0:88:3110:-276.869,-26.4906,0	0/1:70:42,27:42:1487:27:964:-65.7936,0,-112.907	0/1:45:24,21:24:860:21:748:-53.9661,0,-63.8684	1/1:59:0,59:0:0:59:2093:-187.11,-17.7608,0	0/1:43:14,29:14:495:29:984:-75.6882,0,-31.6264	0/1:149:76,73:76:2716:73:2584:-186.956,0,-199.08	0/1:94:44,50:44:1540:50:1755:-129.266,0,-108.492	0/1:11:6,5:6:216:5:176:-12.7254,0,-16.4511	0/1:160:71,89:71:2514:89:3127:-233.196,0,-177.679	0/1:38:21,17:21:752:17:604:-42.2729,0,-56.2922	0/1:64:24,40:24:835:40:1403:-106.965,0,-55.145	0/1:3:1,2:1:36:2:72:-5.92394,0,-2.69008	0/1:14:8,6:8:288:6:203:-14.2385,0,-22.0157	1/1:8:0,8:0:0:8:271:-24.4865,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.7408,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.0936,-1.20412,0	1/1:76:0,76:0:0:76:2683:-241.431,-22.8783,0	0/1:111:46,65:46:1627:65:2255:-168.138,0,-112.312	0/1:21:13,8:13:464:8:284:-19.3366,0,-35.1887	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:54:20,34:20:720:34:1205:-91.988,0,-48.6149	0/1:23:10,13:10:352:13:456:-34.3977,0,-24.926	0/1:51:28,23:28:972:23:812:-57.8802,0,-71.8231	0/1:24:12,12:12:415:12:423:-31.1424,0,-30.4207	1/1:19:0,19:0:0:19:663:-59.8341,-5.71957,0	1/1:61:0,61:0:0:61:2156:-193.347,-18.3628,0	0/1:69:20,49:20:704:49:1730:-134.397,0,-42.103	1/1:145:0,145:0:0:145:5130:-459.571,-43.6494,0	0/1:71:27,44:27:972:44:1564:-119.341,0,-66.1934	0/1:61:16,45:16:568:45:1537:-120.081,0,-32.9585	1/1:149:0,149:0:0:149:5258:-472.882,-44.8535,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58305	1/1:109:0,109:0:0:109:3858:-345.393,-32.8123,0	1/1:28:0,28:0:0:28:977:-88.0534,-8.42884,0	1/1:15:0,15:0:0:15:515:-46.3756,-4.51545,0	1/1:72:0,72:0:0:72:2529:-227.182,-21.6742,0	1/1:27:0,27:0:0:27:937:-84.4191,-8.12781,0	1/1:2:0,2:0:0:2:72:-6.83481,-0.60206,0	1/1:6:0,6:0:0:6:216:-19.755,-1.80618,0	1/1:56:0,56:0:0:56:1939:-173.478,-16.8577,0	1/1:61:0,61:0:0:61:2154:-192.916,-18.3628,0	0/1:7:5,2:5:180:2:72:-4.72458,0,-14.3474	0/1:88:26,62:26:920:62:2170:-168.427,0,-56.4906	1/1:117:2,115:2:72:115:4046:-356.71,-28.3887,0	0/1:32:14,18:14:504:18:640:-48.0896,0,-35.7487	0/1:48:15,33:15:536:33:1176:-91.274,0,-33.659	1/1:125:0,125:0:0:125:4433:-397.935,-37.6288,0	0/1:55:38,17:38:1323:17:612:-38.7326,0,-102.692	1/1:16:1,15:1:36:15:540:-45.1482,-1.22331,0	1/1:76:0,76:0:0:76:2686:-240.798,-22.8783,0	1/1:34:0,34:0:0:34:1216:-109.304,-10.235,0	0/1:13:6,7:6:216:7:235:-17.4644,0,-15.6924	1/1:71:0,71:0:0:71:2501:-224.591,-21.3731,0	0/1:26:13,13:13:459:13:460:-33.8117,0,-33.3517	1/1:95:0,95:0:0:95:3352:-300.983,-28.5979,0	0/1:76:34,42:34:1196:42:1466:-109.262,0,-84.8202	0/1:51:17,34:17:612:34:1195:-92.1593,0,-39.5563	1/1:28:0,28:0:0:28:979:-87.847,-8.42884,0	1/1:9:0,9:0:0:9:302:-27.4213,-2.70927,0	1/1:55:0,55:0:0:55:1943:-173.688,-16.5567,0	1/1:67:0,67:0:0:67:2336:-209.051,-20.169,0	1/1:157:0,157:0:0:157:5507:-494.68,-47.2617,0	0/1:65:32,33:32:1148:33:1153:-84.2966,0,-83.9053	1/1:14:1,13:1:36:13:464:-38.3682,-0.61874,0	0/1:21:10,11:10:356:11:384:-28.5513,0,-26.0365	0/1:38:22,16:22:771:16:560:-39.2103,0,-58.0553	0/1:23:9,14:9:324:14:496:-37.583,0,-22.1406	0/1:33:22,11:22:780:11:379:-24.4331,0,-60.396	0/1:35:20,15:20:716:15:532:-36.9876,0,-53.7023	0/1:20:11,9:11:392:9:316:-22.5777,0,-29.5476	0/1:29:15,14:15:532:14:492:-35.6359,0,-39.3979	0/1:25:15,10:15:527:10:356:-24.8218,0,-40.1912	1/1:65:1,64:1:36:64:2263:-199.649,-15.9687,0	1/1:30:0,30:0:0:30:1059:-95.461,-9.0309,0
chr06	30846005	.	GCATT	ACATT,ACATC	101111	PASS	AB=0.537071,0.459313;ABP=29.4135,34.8167;AC=139,49;AF=0.739362,0.260638;AN=188;AO=3739,1022;CIGAR=1X4M,1X3M1X;DP=4784;DPB=4784;DPRA=51.4301,0.807692;EPP=8104.78,2222.26;EPPR=16.0391;GTI=2;LEN=1,5;MEANALT=1.72043,2.11538;MQM=53.8976,53.5411;MQMR=60;NS=94;NUMALT=2;ODDS=2.90931;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=133132,35768;QR=205;RO=6;RPL=2,0;RPP=8104.78,2222.26;RPPR=16.0391;RPR=3737,1022;RUN=1,1;SAF=0,0;SAP=8122.15,2222.26;SAR=3739,1022;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,12,12:0:0:12,12:432,408:-67.3471,-32.8176,-29.2052,-34.5166,0,-30.9042	1/2:74:0,48,26:0:0:48,26:1698,904:-210.511,-72.9534,-58.5039,-137.904,0,-130.078	1/2:57:0,31,26:0:0:31,26:1099,905:-162.109,-73.1729,-63.841,-89.2842,0,-81.4575	1/1:144:0,142,0:0:0:142,0:5007,0:-449.45,-42.7463,0,-449.45,-42.7463,-449.45	1/1:54:0,54,0:0:0:54,0:1935,0:-173.809,-16.2556,0,-173.809,-16.2556,-173.809	1/1:41:0,41,0:0:0:41,0:1454,0:-130.64,-12.3422,0,-130.64,-12.3422,-130.64	1/1:102:0,102,0:0:0:102,0:3645,0:-327.502,-30.7051,0,-327.502,-30.7051,-327.502	1/2:70:0,37,33:0:0:37,33:1326,1159:-201.178,-94.0336,-82.8955,-107.496,0,-97.5625	1/1:28:0,27,1:0:0:27,1:960,35:-85.592,-8.12781,0,-82.7508,-4.93742,-82.4498	1/2:42:0,23,19:0:0:23,19:815,662:-120.397,-54.1465,-47.2228,-66.6006,0,-60.881	1/2:12:0,7,5:0:0:7,5:252,180:-35.4116,-15.035,-12.9278,-20.7351,0,-19.23	1/1:20:0,20,0:0:0:20,0:708,0:-63.9047,-6.0206,0,-63.9047,-6.0206,-63.9047	1/1:26:0,26,0:0:0:26,0:923,0:-82.9752,-7.82678,0,-82.9752,-7.82678,-82.9752	1/2:26:0,14,12:0:0:14,12:491,418:-74.1025,-34.2058,-29.9914,-40.2451,0,-36.6328	1/2:24:0,14,10:0:0:14,10:500,338:-68.333,-27.6721,-23.4577,-41.0059,0,-37.9956	1/1:14:0,14,0:0:0:14,0:495,0:-44.8223,-4.21442,0,-44.8223,-4.21442,-44.8223	1/1:18:0,17,0:0:0:17,0:612,0:-55.0566,-5.11751,0,-55.0566,-5.11751,-55.0566	1/1:23:0,23,0:0:0:23,0:820,0:-73.9048,-6.92369,0,-73.9048,-6.92369,-73.9048	1/2:9:0,5,4:0:0:5,4:171,144:-25.911,-12.076,-10.5709,-14.186,0,-12.9818	1/1:146:0,146,0:0:0:146,0:5224,0:-468.664,-43.9504,0,-468.664,-43.9504,-468.664	1/1:87:1,86,0:1:26:86,0:3053,0:-270.646,-23.5898,0,-270.947,-25.8886,-272.985	1/2:73:0,29,44:0:0:29,44:1040,1531:-209.166,-124.531,-115.801,-84.9878,0,-71.7425	1/2:46:0,22,24:0:0:22,24:792,854:-134.205,-69.7224,-63.0998,-64.8392,0,-57.6144	1/1:59:0,58,0:0:0:58,0:2075,0:-185.325,-17.4597,0,-185.325,-17.4597,-185.325	1/2:43:0,29,14:0:0:29,14:1044,487:-124.674,-39.7485,-31.0187,-85.2753,0,-81.0608	1/2:149:0,69,79:0:0:69,79:2463,2756:-423.697,-223.435,-202.664,-200.402,0,-176.621	1/2:92:0,47,45:0:0:47,45:1674,1564:-260.623,-124.867,-110.718,-136.104,0,-122.558	1/2:11:0,5,6:0:0:5,6:180,210:-31.9544,-17.4118,-15.9067,-14.8959,0,-13.0897	1/2:160:0,87,73:0:0:87,73:3106,2559:-461.092,-208.182,-181.993,-253.263,0,-231.287	1/2:38:0,16,22:0:0:16,22:568,785:-109.904,-64.0929,-59.2764,-46.164,0,-39.5413	1/2:66:0,38,27:0:0:38,27:1358,921:-184.475,-74.1809,-62.7417,-110.281,0,-102.154	1/2:3:0,2,1:0:0:2,1:72,36:-9.15779,-3.29214,-2.69008,-6.22497,0,-5.92394	1/2:13:0,5,8:0:0:5,8:180,277:-37.3714,-22.8279,-21.3228,-14.8959,0,-12.4876	1/1:5:0,5,0:0:0:5,0:180,0:-16.5105,-1.50515,0,-16.5105,-1.50515,-16.5105	1/1:4:0,4,0:0:0:4,0:144,0:-13.2801,-1.20412,0,-13.2801,-1.20412,-13.2801	1/1:4:0,4,0:0:0:4,0:125,0:-11.3518,-1.20412,0,-11.3518,-1.20412,-11.3518	1/1:75:0,75,0:0:0:75,0:2671,0:-240.305,-22.5773,0,-240.305,-22.5773,-240.305	1/2:110:0,61,48:0:0:61,48:2166,1690:-312.74,-137.048,-118.685,-175.839,0,-161.39	1/2:22:0,9,13:0:0:9,13:307,447:-60.7405,-36.0686,-33.3593,-25.0103,0,-21.0969	1/1:1:0,1,0:0:0:1,0:36,0:-3.59317,-0.30103,0,-3.59317,-0.30103,-3.59317	1/2:56:0,35,20:0:0:35,20:1248,707:-158.761,-57.3376,-46.8015,-101.431,0,-95.4105	1/2:25:0,15,10:0:0:15,10:527,355:-71.98,-29.1502,-24.6348,-43.1822,0,-40.1719	1/2:54:0,26,28:0:0:26,28:932,965:-153.956,-78.2119,-70.3852,-76.0939,0,-67.6651	1/2:23:0,11,12:0:0:11,12:396,428:-67.4119,-35.2085,-31.8972,-32.5609,0,-28.9486	1/1:20:0,20,0:0:0:20,0:700,0:-62.8368,-6.0206,0,-62.8368,-6.0206,-62.8368	1/1:63:0,63,0:0:0:63,0:2221,0:-199.438,-18.9649,0,-199.438,-18.9649,-199.438	1/2:72:0,50,22:0:0:50,22:1796,765:-207.193,-61.627,-46.5755,-145.913,0,-139.29	1/1:145:0,145,0:0:0:145,0:5164,0:-463.591,-43.6494,0,-463.591,-43.6494,-463.591	1/2:74:0,47,27:0:0:47,27:1670,962:-214.295,-78.6126,-64.4641,-136.037,0,-127.91	1/2:58:0,42,16:0:0:42,16:1499,567:-168.562,-46.4799,-33.8367,-122.436,0,-117.62	1/1:149:0,149,0:0:0:149,0:5309,0:-477.504,-44.8535,0,-477.504,-44.8535,-477.504	2/2:1:0,0,1:0:0:0,1:0,30:-2.99568,-2.99568,-2.99568,-0.30103,-0.30103,0	1/1:108:2,105,0:2:72:105,0:3754,0:-329.622,-25.6587,0,-330.224,-31.6082,-336.099	1/1:29:0,29,0:0:0:29,0:1029,0:-92.6835,-8.72987,0,-92.6835,-8.72987,-92.6835	1/1:14:0,14,0:0:0:14,0:504,0:-45.38,-4.21442,0,-45.38,-4.21442,-45.38	1/1:76:0,75,0:0:0:75,0:2683,0:-240.7,-22.5773,0,-240.7,-22.5773,-240.7	1/1:25:0,25,0:0:0:25,0:886,0:-79.8973,-7.52575,0,-79.8973,-7.52575,-79.8973	1/1:3:0,3,0:0:0:3,0:108,0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chr06	30854802	.	A	G	21745.4	PASS	AB=0.519439;ABP=11.1992;AC=51;AF=0.271277;AN=188;AO=1303;CIGAR=1X;DP=4707;DPB=4707;DPRA=1.05637;EPP=2832.44;EPPR=7390.36;GTI=1;LEN=1;MEANALT=1.03571;MQM=59.9847;MQMR=59.9894;NS=94;NUMALT=1;ODDS=1.49996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46389;QR=121777;RO=3402;RPL=1303;RPP=2832.44;RPPR=7390.36;RPR=0;RUN=1;SAF=1303;SAP=2832.44;SAR=0;SRF=3402;SRP=7390.36;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:18,9:18:636:9:320:-21.0145,0,-49.4402	0/1:49:27,22:27:968:22:779:-55.6816,0,-72.6869	0/1:94:42,52:42:1496:52:1845:-138.031,0,-106.638	0/0:80:79,1:79:2828:1:36:0,-20.4841,-251.161	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:103:65,38:65:2324:38:1351:-90.8835,0,-178.414	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/1:46:18,28:18:644:28:996:-76.1075,0,-44.4432	0/1:48:16,32:16:576:32:1148:-89.1804,0,-37.7255	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:52:51,1:51:1824:1:36:0,-12.0553,-160.843	0/1:59:28,31:28:1004:31:1103:-81.819,0,-72.9151	0/1:39:20,19:20:720:19:680:-49.789,0,-53.3886	0/0:43:42,1:42:1500:1:36:0,-9.34601,-131.696	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:18:13,5:13:460:5:180:-11.1335,0,-36.3168	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:69:24,45:24:852:45:1603:-123.788,0,-56.2293	0/1:65:26,39:26:919:39:1396:-106.372,0,-63.4592	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:48:22,26:22:792:26:928:-69.3888,0,-57.1562	0/1:116:59,57:59:2116:57:2018:-146.972,0,-155.789	0/1:62:34,28:34:1211:28:993:-71.0186,0,-90.6317	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:113:60,53:60:2156:53:1863:-133.93,0,-160.291	0/1:54:27,27:27:968:27:968:-71.1817,0,-71.1817	0/1:49:27,22:27:964:22:784:-56.1334,0,-72.3264	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:131:131,0:131:4690:0:0:0,-39.4349,-422.259	0/1:73:35,38:35:1252:38:1360:-100.725,0,-91.0099	0/1:36:19,17:19:680:17:604:-43.8535,0,-50.6921	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:97:36,61:36:1292:61:2188:-167.986,0,-87.3839	0/1:33:13,20:13:468:20:720:-55.1948,0,-32.5257	0/1:86:41,45:41:1476:45:1608:-119.122,0,-107.248	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/1:51:34,17:34:1209:17:608:-39.6995,0,-93.7616	0/0:52:51,1:51:1817:1:32:0,-12.4542,-160.61	0/1:44:23,21:23:828:21:739:-53.5871,0,-61.5988	0/1:56:24,32:24:864:32:1144:-86.4118,0,-61.2249	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:178:178,0:178:6370:0:0:0,-53.5833,-573.389	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:86:84,1:84:3007:1:36:0,-22.2742,-267.336	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:62:42,20:42:1500:20:705:-45.1089,0,-116.631	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:48:31,17:31:1104:17:608:-40.6026,0,-85.2212	0/1:25:9,16:9:324:16:567:-43.835,0,-21.9801	0/0:57:56,1:56:2004:1:36:0,-13.5604,-177.035	0/1:100:26,73:26:932:73:2586:-202.827,0,-54.0371	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/1:22:9,13:9:324:13:452:-34.3515,0,-22.8832	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.903	0/1:44:27,17:27:972:17:612:-42.1681,0,-74.5526	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:84:36,48:36:1288:48:1708:-128.719,0,-90.9371	0/1:80:28,52:28:991:52:1849:-142.606,0,-65.4211	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.082	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/0:91:91,0:91:3256:0:0:0,-27.3937,-292.324	0/1:47:17,30:17:612:30:1071:-82.554,0,-41.265	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:16:3,13:3:108:13:455:-36.4655,0,-5.25869	0/1:76:45,31:45:1616:31:1108:-77.1527,0,-122.852	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	0/1:47:19,28:19:676:28:987:-74.9946,0,-47.0196	0/1:50:26,24:26:932:24:852:-61.9489,0,-69.1474	0/1:31:13,18:13:468:18:640:-48.5974,0,-33.1277	0/1:103:57,46:57:2044:46:1647:-117.512,0,-153.226	0/1:45:12,33:12:432:33:1180:-92.9613,0,-25.6748	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681
chr06	30862671	.	A	G	105203	PASS	AB=0.526561;ABP=22.7357;AC=138;AF=0.741935;AN=186;AO=5057;CIGAR=1X;DP=6599;DPB=6599;DPRA=71.7174;EPP=10914.8;EPPR=3325.37;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.9239;MQMR=59.9628;NS=93;NUMALT=1;ODDS=0.53347;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178420;QR=54953;RO=1534;RPL=5044;RPP=10871.5;RPPR=3325.37;RPR=13;RUN=1;SAF=5052;SAP=10940.8;SAR=5;SRF=1534;SRP=3334.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:34,29:34:1212:29:1011:-72.3355,0,-90.2312	0/1:41:24,17:24:860:17:596:-41.6256,0,-65.3796	0/1:98:39,59:39:1400:59:2075:-157.517,0,-96.7982	1/1:137:0,137:0:0:137:4874:-438.815,-41.2411,0	1/1:57:1,56:1:36:56:1997:-176.403,-13.5604,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:104:0,104:0:0:104:3633:-326.15,-31.3071,0	0/1:90:30,60:30:1080:60:2118:-163.794,0,-70.4206	1/1:129:0,129:0:0:129:4555:-410.12,-38.8329,0	0/1:43:16,27:16:576:27:960:-73.772,0,-39.2307	0/1:31:18,13:18:648:13:451:-31.5873,0,-49.32	1/1:118:0,118:0:0:118:4145:-373.234,-35.5215,0	1/1:63:0,63:0:0:63:2228:-200.782,-18.9649,0	0/1:52:32,20:32:1148:20:675:-45.4098,0,-87.9763	0/1:57:24,33:24:851:33:1153:-86.9129,0,-59.7507	1/1:47:0,47:0:0:47:1680:-151.417,-14.1484,0	1/1:20:0,19:0:0:19:680:-61.2073,-5.71957,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:21:9,12:9:324:12:419:-31.721,0,-23.1842	1/1:97:0,97:0:0:97:3433:-309.185,-29.1999,0	1/1:181:0,181:0:0:181:6372:-573.569,-54.4864,0	0/1:115:65,50:65:2317:50:1765:-124.513,0,-174.17	0/1:86:47,39:47:1688:39:1395:-99.9596,0,-126.318	1/1:78:0,78:0:0:78:2779:-250.351,-23.4803,0	0/1:116:42,74:42:1500:74:2652:-204.007,0,-100.375	0/1:152:67,85:67:2400:85:3005:-224.925,0,-170.5	0/1:197:95,102:95:3397:102:3585:-263.556,0,-246.64	0/1:37:14,23:14:496:23:800:-61.1776,0,-33.8362	0/1:177:90,87:90:3220:87:3085:-224.597,0,-236.74	0/1:86:47,39:47:1692:39:1359:-96.7189,0,-126.678	0/1:91:51,40:51:1824:40:1428:-101.421,0,-137.047	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:23:9,14:9:324:14:496:-38.0506,0,-22.5822	1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:358:-32.5629,-3.0103,0	1/1:181:1,180:1:36:180:6341:-567.189,-50.8882,0	0/1:102:54,48:54:1928:48:1694:-122.04,0,-143.087	0/1:34:15,19:15:540:19:680:-51.2941,0,-38.7015	.:.:.:.:.:.:.:.	0/1:80:29,51:29:1044:51:1819:-139.908,0,-70.1924	0/1:22:9,13:9:324:13:464:-35.3872,0,-22.8832	0/1:89:42,47:42:1508:47:1665:-123.345,0,-109.221	0/1:55:29,26:29:1040:26:913:-65.925,0,-77.3577	1/1:51:0,51:0:0:51:1663:-149.942,-15.3525,0	1/1:149:0,149:0:0:149:5274:-474.796,-44.8535,0	0/1:92:51,41:51:1824:41:1448:-102.918,0,-136.746	1/1:109:0,108:0:0:108:3811:-342.828,-32.5112,0	0/1:65:26,39:26:936:39:1393:-106.093,0,-64.9925	0/1:44:20,24:20:701:24:842:-62.8517,0,-50.1664	1/1:83:1,82:1:36:82:2914:-258.897,-21.3872,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:101:0,101:0:0:101:3602:-324.386,-30.404,0	1/1:55:0,55:0:0:55:1927:-173.702,-16.5567,0	1/1:7:0,7:0:0:7:252:-23.0266,-2.10721,0	1/1:80:0,80:0:0:80:2776:-250.079,-24.0824,0	1/1:66:0,66:0:0:66:2344:-211.215,-19.868,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:96:0,96:0:0:96:3415:-307.565,-28.8989,0	1/1:68:1,67:1:36:67:2404:-213.017,-16.8718,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:65:27,38:27:972:38:1356:-102.773,0,-68.231	1/1:136:6,130:6:216:130:4582:-392.756,-21.1496,0	0/1:45:17,28:17:608:28:982:-75.1453,0,-41.5057	0/1:30:14,16:14:504:16:563:-41.9683,0,-36.6672	1/1:64:1,63:1:36:63:2200:-194.664,-15.6676,0	0/1:94:58,36:58:2076:36:1271:-86.3939,0,-158.814	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	0/1:27:8,19:8:280:19:675:-52.9432,0,-17.4115	1/1:140:0,140:0:0:140:4957:-445.93,-42.1442,0	0/1:56:30,26:30:1068:26:921:-66.3294,0,-79.3832	1/1:202:0,200:0:0:200:7046:-633.835,-60.206,0	0/1:120:50,68:50:1796:68:2421:-182.263,0,-126.041	0/1:80:28,51:28:1008:51:1819:-139.998,0,-67.0419	1/1:48:0,48:0:0:48:1679:-151.393,-14.4494,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:79:0,79:0:0:79:2785:-250.886,-23.7814,0	1/1:68:0,68:0:0:68:2384:-214.779,-20.47,0	1/1:139:1,138:1:36:138:4891:-436.746,-38.2449,0	0/1:52:26,26:26:936:26:926:-68.0042,0,-68.9059	1/1:47:0,47:0:0:47:1629:-146.893,-14.1484,0	0/1:32:16,16:16:576:16:558:-40.9135,0,-42.542	0/1:115:55,60:55:1976:60:2113:-155.818,0,-143.496	0/1:25:8,17:8:288:17:603:-47.0738,0,-18.7417	0/1:78:41,37:41:1472:37:1281:-92.1058,0,-109.296	0/1:73:35,38:35:1260:38:1310:-96.218,0,-91.7303	0/1:20:10,10:10:360:10:347:-25.543,0,-26.7237	0/1:80:36,44:36:1283:44:1509:-112.012,0,-91.6902	0/1:62:32,30:32:1148:30:1048:-75.9635,0,-84.966	1/1:87:0,87:0:0:87:3062:-275.812,-26.1896,0	1/1:102:0,101:0:0:101:3545:-319.043,-30.404,0
chr06	30865059	.	A	G	88158.9	PASS	AB=0.48183;ABP=24.9476;AC=48;AF=0.255319;AN=188;AO=3705;CIGAR=1X;DP=14835;DPB=14835;DPRA=1.13812;EPP=2669.55;EPPR=6987.07;GTI=1;LEN=1;MEANALT=1.0678;MQM=59.9906;MQMR=59.993;NS=94;NUMALT=1;ODDS=0.465441;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130773;QR=397522;RO=11126;RPL=2831;RPP=2247.66;RPPR=6071.22;RPR=874;RUN=1;SAF=2045;SAP=89.8838;SAR=1660;SRF=5781;SRP=40.1115;SRR=5345;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:103:59,44:59:2120:44:1557:-109.415,0,-160.062	0/1:218:112,106:112:4001:106:3735:-270.724,0,-294.654	0/1:289:143,146:143:5132:146:5174:-378.808,0,-375.023	0/0:259:257,2:257:9181:2:72:0,-71.13,-819.426	0/0:136:136,0:136:4845:0:0:0,-40.9401,-436.205	0/0:138:138,0:138:4944:0:0:0,-41.5421,-445.109	0/0:179:179,0:179:6394:0:0:0,-53.8844,-575.549	0/1:403:216,187:216:7696:187:6580:-470.974,0,-571.092	0/0:179:179,0:179:6397:0:0:0,-53.8844,-575.818	0/1:229:116,113:116:4151:113:3976:-289.096,0,-304.837	0/1:108:52,56:52:1868:56:1969:-144.973,0,-135.888	0/0:154:154,0:154:5466:0:0:0,-46.3586,-492.067	0/0:143:141,2:141:5051:2:68:0,-36.5896,-448.277	0/1:119:59,60:59:2107:60:2096:-153.083,0,-154.076	0/1:138:66,72:66:2368:72:2572:-190.188,0,-171.836	0/0:117:117,0:117:4164:0:0:0,-35.2205,-374.942	0/0:151:151,0:151:5388:0:0:0,-45.4555,-485.051	0/0:95:94,1:94:3376:1:36:0,-24.9996,-300.457	0/1:74:43,31:43:1535:31:1099:-76.9439,0,-116.166	0/0:233:233,0:233:8331:0:0:0,-70.14,-749.798	0/0:315:315,0:315:11258:0:0:0,-94.8244,-1013.1	0/1:87:28,59:28:1008:59:2077:-161.009,0,-64.8467	0/1:114:53,61:53:1896:61:2161:-160.439,0,-136.601	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/1:139:79,60:79:2823:60:2119:-149.134,0,-212.452	0/1:441:224,217:224:8023:217:7652:-555.971,0,-589.335	0/1:309:152,157:152:5422:157:5576:-408.947,0,-395.092	0/1:72:46,26:46:1639:26:919:-61.352,0,-126.124	0/1:326:181,144:181:6485:144:5080:-359.153,0,-485.538	0/1:146:80,66:80:2839:66:2324:-165.469,0,-211.799	0/1:180:107,73:107:3808:73:2547:-175.295,0,-288.732	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:342:342,0:342:12242:0:0:0,-102.952,-1101.62	0/1:148:85,63:85:3044:63:2209:-154.521,0,-229.637	0/1:84:53,31:53:1892:31:1107:-74.6536,0,-145.272	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:139:59,79:59:2116:79:2786:-209.08,0,-148.807	0/1:51:36,15:36:1292:15:536:-33.2223,0,-101.231	0/1:326:172,154:172:6148:154:5401:-388.085,0,-455.282	0/1:155:64,91:64:2292:91:3219:-243.272,0,-159.882	0/0:136:135,1:135:4828:1:36:0,-37.3418,-431.077	0/0:159:159,0:159:5662:0:0:0,-47.8638,-509.699	0/1:180:71,109:71:2538:109:3884:-295.571,0,-174.484	0/0:254:253,1:253:9017:1:36:0,-72.8633,-807.914	0/1:133:63,70:63:2260:70:2450:-180.715,0,-163.626	0/1:247:130,116:130:4643:116:4111:-295.763,0,-343.62	0/0:200:200,0:200:7148:0:0:0,-60.206,-643.379	0/1:9:8,1:8:275:1:36:-0.889005,0,-22.3742	0/0:188:186,2:186:6658:2:72:0,-49.7569,-592.46	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:200:200,0:200:7148:0:0:0,-60.206,-643.379	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/0:163:163,0:163:5835:0:0:0,-49.0679,-525.262	0/0:207:204,3:204:7245:3:99:0,-53.0766,-642.87	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:270:141,129:141:5039:129:4570:-330.189,0,-372.378	0/0:308:308,0:308:11031:0:0:0,-92.7172,-992.596	0/1:137:83,54:83:2954:54:1898:-129.853,0,-224.852	0/1:136:61,74:61:2188:74:2593:-192.622,0,-156.187	0/0:278:277,1:277:9907:1:36:0,-80.0881,-887.974	0/1:230:82,148:82:2931:148:5293:-407.268,0,-194.787	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:114:113,1:113:4052:1:36:0,-30.7191,-361.268	0/0:150:150,0:150:5348:0:0:0,-45.1545,-481.453	0/1:40:20,20:20:720:20:708:-52.0044,0,-53.0876	0/0:157:157,0:157:5586:0:0:0,-47.2617,-502.866	0/1:151:98,53:98:3496:53:1875:-123.573,0,-269.396	0/0:366:366,0:366:13056:0:0:0,-110.177,-1174.77	0/1:215:120,95:120:4274:95:3387:-240.324,0,-320.115	0/1:228:115,113:115:4069:113:3939:-286.069,0,-297.762	0/0:215:215,0:215:7677:0:0:0,-64.7214,-690.966	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:201:197,4:197:7008:4:144:0,-47.1934,-617.473	0/0:206:206,0:206:7363:0:0:0,-62.0122,-662.719	0/0:332:332,0:332:11849:0:0:0,-99.942,-1066.27	0/1:154:82,72:82:2944:72:2539:-182.401,0,-218.835	0/0:122:122,0:122:4347:0:0:0,-36.7257,-391.404	0/1:132:70,62:70:2516:62:2190:-157.629,0,-186.956	0/1:283:144,139:144:5147:139:4839:-350.48,0,-378.18	0/1:39:21,18:21:756:18:644:-46.5504,0,-56.6271	0/1:136:60,76:60:2151:76:2690:-201.405,0,-152.916	0/1:124:65,59:65:2322:59:2076:-149.782,0,-171.911	0/1:70:44,26:44:1571:26:932:-63.1268,0,-120.609	0/1:175:111,64:111:3971:64:2265:-151.431,0,-304.9	0/1:138:70,68:70:2512:68:2388:-173.635,0,-184.79	0/0:187:187,0:187:6672:0:0:0,-56.2926,-600.557	0/0:227:226,1:226:8095:1:36:0,-64.7355,-724.968
chr06	30865083	.	T	C	113348	PASS	AB=0.537978;ABP=48.8628;AC=142;AF=0.763441;AN=186;AO=5467;CIGAR=1X;DP=7167;DPB=7167;DPRA=0;EPP=11865.8;EPPR=3688;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.993;MQMR=59.9882;NS=93;NUMALT=1;ODDS=3.92719;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193607;QR=60409;RO=1697;RPL=5467;RPP=11874.4;RPPR=3688;RPR=0;RUN=1;SAF=1;SAP=11865.8;SAR=5466;SRF=0;SRP=3688;SRR=1697;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:19,50:19:654:50:1796:-141.151,0,-38.4065	0/1:73:40,33:40:1402:33:1142:-81.1062,0,-104.492	0/1:210:106,104:106:3774:104:3683:-268.454,0,-276.641	1/1:84:0,84:0:0:84:2945:-265.278,-25.2865,0	1/1:67:0,66:0:0:66:2376:-213.885,-19.868,0	1/1:36:0,35:0:0:35:1245:-112.139,-10.5361,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:161:64,97:64:2285:97:3412:-258.826,0,-157.444	1/1:117:0,117:0:0:117:4159:-374.49,-35.2205,0	0/1:80:31,49:31:1097:49:1741:-132.889,0,-74.9556	0/1:59:32,27:32:1152:27:957:-68.6831,0,-86.2294	1/1:95:0,95:0:0:95:3378:-304.234,-28.5979,0	1/1:84:1,83:1:36:83:2950:-262.133,-21.6882,0	0/1:55:28,27:28:1008:27:957:-69.8872,0,-74.4797	0/1:65:30,35:30:1076:35:1252:-93.4181,0,-77.5859	1/1:52:0,52:0:0:52:1857:-167.408,-15.6536,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:22:12,10:12:432:10:345:-24.7582,0,-32.5985	1/1:93:0,93:0:0:93:3252:-292.897,-27.9958,0	1/1:209:0,209:0:0:209:7290:-656.155,-62.9153,0	0/1:41:24,17:24:845:17:581:-40.2682,0,-64.0249	0/1:83:46,37:46:1580:37:1287:-91.1393,0,-117.496	1/1:35:0,35:0:0:35:1211:-109.287,-10.5361,0	0/1:76:29,47:29:1029:47:1658:-126.626,0,-70.0429	0/1:208:84,124:84:3012:124:4436:-336.795,0,-208.697	0/1:161:87,74:87:3132:74:2645:-189.829,0,-233.639	0/1:39:15,24:15:536:24:864:-66.3424,0,-36.8346	0/1:179:63,116:63:2253:116:4152:-319.979,0,-149.147	0/1:38:15,23:15:540:23:813:-62.05,0,-37.4974	0/1:80:29,51:29:1021:51:1817:-139.727,0,-68.1179	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:143:0,143:0:0:143:5099:-459.05,-43.0473,0	0/1:63:33,30:33:1184:30:1057:-76.4741,0,-87.9034	0/1:24:9,15:9:324:15:532:-40.9884,0,-22.2811	.:.:.:.:.:.:.:.	0/1:12:7,5:7:237:5:180:-12.9397,0,-18.0467	0/1:22:10,12:10:360:12:417:-31.2376,0,-26.1216	0/1:202:91,111:91:3249:111:3864:-287.142,0,-231.822	0/1:72:41,31:41:1468:31:1112:-78.7172,0,-110.742	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:87:0,87:0:0:87:3084:-277.787,-26.1896,0	0/1:91:62,29:62:2209:29:1040:-66.5206,0,-171.68	1/1:112:0,112:0:0:112:3915:-352.539,-33.7154,0	0/1:52:24,28:24:864:28:980:-72.8566,0,-62.429	0/1:134:63,71:63:2260:71:2552:-189.592,0,-163.325	1/1:45:0,45:0:0:45:1576:-142.127,-13.5464,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:92:2,90:2:72:90:3228:-283.905,-20.858,0	1/1:44:0,44:0:0:44:1535:-138.436,-13.2453,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:136:0,136:0:0:136:4771:-429.545,-40.9401,0	1/1:23:0,23:0:0:23:809:-73.1283,-6.92369,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:88:0,88:0:0:88:3124:-281.384,-26.4906,0	1/1:74:2,72:2:72:72:2573:-224.981,-15.4395,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:143:68,75:68:2387:75:2670:-197.495,0,-172.034	1/1:160:0,160:0:0:160:5680:-511.231,-48.1648,0	0/1:58:25,33:25:866:33:1131:-84.6289,0,-60.7915	0/1:78:45,33:45:1620:33:1169:-82.0349,0,-122.61	1/1:153:1,152:1:36:152:5377:-480.462,-42.4593,0	0/1:129:77,52:77:2738:52:1860:-128.847,0,-207.827	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	1/1:72:0,72:0:0:72:2485:-223.895,-21.6742,0	0/1:76:31,45:31:1116:45:1590:-120.508,0,-77.8734	1/1:194:0,194:0:0:194:6930:-623.764,-58.3998,0	0/1:81:34,47:34:1194:47:1680:-127.104,0,-83.3778	0/1:135:54,81:54:1899:81:2870:-217.898,0,-130.543	1/1:86:0,86:0:0:86:3052:-274.907,-25.8886,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:81:0,80:0:0:80:2848:-256.196,-24.0824,0	1/1:115:0,115:0:0:115:4046:-364.323,-34.6185,0	1/1:187:0,187:0:0:187:6630:-596.776,-56.2926,0	0/1:57:30,27:30:1068:27:960:-69.5576,0,-79.2734	1/1:69:0,69:0:0:69:2469:-222.462,-20.7711,0	0/1:41:18,23:18:644:23:824:-62.1411,0,-45.9484	0/1:113:51,62:51:1832:62:2202:-164.425,0,-131.144	0/1:20:12,8:12:408:8:284:-19.8828,0,-31.0235	0/1:76:40,36:40:1440:36:1262:-91.0002,0,-107.019	0/1:69:29,40:29:1014:40:1425:-107.774,0,-70.7964	0/1:37:11,26:11:396:26:917:-71.7065,0,-24.8446	0/1:83:32,51:32:1152:51:1783:-135.761,0,-79.0047	0/1:70:30,40:30:1076:40:1428:-107.745,0,-76.0808	1/1:164:0,164:0:0:164:5718:-514.729,-49.3689,0	1/1:123:0,123:0:0:123:4353:-391.941,-37.0267,0
chr06	30986027	.	C	A	110121	PASS	AB=0.484539;ABP=11.1351;AC=138;AF=0.734043;AN=188;AO=5297;CIGAR=1X;DP=7331;DPB=7331;DPRA=0;EPP=11505.3;EPPR=4406.76;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9877;MQMR=59.999;NS=94;NUMALT=1;ODDS=3.93562;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189528;QR=72252;RO=2028;RPL=5297;RPP=11505.3;RPPR=4406.76;RPR=0;RUN=1;SAF=0;SAP=11505.3;SAR=5297;SRF=0;SRP=4406.76;SRR=2028;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:22,19:22:792:19:661:-47.4694,0,-59.2634	0/1:76:42,34:42:1508:34:1209:-86.2367,0,-113.136	0/1:77:40,37:40:1417:37:1328:-96.6429,0,-104.646	1/1:143:0,143:0:0:143:5136:-462.38,-43.0473,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	1/1:93:0,93:0:0:93:3334:-300.277,-27.9958,0	0/1:112:61,51:61:2173:51:1832:-131.445,0,-162.119	1/1:68:0,68:0:0:68:2426:-218.595,-20.47,0	0/1:100:48,52:48:1713:52:1849:-136.585,0,-124.351	0/1:42:16,26:16:546:26:936:-71.9162,0,-36.816	1/1:73:0,73:0:0:73:2608:-234.967,-21.9752,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:37:22,15:22:773:15:540:-37.7984,0,-58.7514	0/1:61:35,26:35:1241:26:932:-65.836,0,-93.6297	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:46:0,45:0:0:45:1616:-145.517,-13.5464,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	1/1:135:0,135:0:0:135:4825:-434.404,-40.6391,0	1/1:200:0,200:0:0:200:7165:-644.904,-60.206,0	0/1:87:59,28:59:2116:28:1004:-64.4863,0,-164.519	0/1:82:39,43:39:1385:43:1548:-114.929,0,-100.262	1/1:160:0,160:0:0:160:5729:-515.725,-48.1648,0	0/1:45:23,22:23:828:22:788:-57.6984,0,-61.2978	0/1:381:204,177:204:7290:177:6326:-454.738,0,-541.457	0/1:196:80,116:80:2857:116:4149:-314.59,0,-198.364	0/1:36:18,18:18:648:18:644:-47.4535,0,-47.8148	0/1:182:89,92:89:3181:92:3296:-242.161,0,-231.813	0/1:66:37,29:37:1332:29:995:-69.9854,0,-100.314	0/1:84:42,42:42:1493:42:1497:-109.737,0,-109.376	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:19:5,14:5:180:14:500:-39.6166,0,-10.8325	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:188:0,188:0:0:188:6731:-605.865,-56.5936,0	0/1:135:80,55:80:2823:55:1979:-137.746,0,-213.667	0/1:33:18,15:18:644:15:540:-39.0025,0,-48.3566	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:84:42,42:42:1508:42:1504:-110.368,0,-110.728	0/1:19:8,11:8:273:11:396:-30.2632,0,-19.1806	0/1:93:52,41:52:1864:41:1457:-103.428,0,-140.044	0/1:72:29,43:29:1021:43:1532:-116.499,0,-70.5261	1/1:64:3,61:3:108:61:2192:-187.47,-9.19075,0	1/1:61:0,61:0:0:61:2176:-196.107,-18.3628,0	0/1:103:55,48:55:1968:48:1716:-123.72,0,-146.389	1/1:98:1,97:1:36:97:3488:-310.531,-25.9027,0	0/1:111:53,58:53:1900:58:2073:-153.424,0,-137.864	0/1:107:54,53:54:1936:53:1870:-136.365,0,-142.306	1/1:128:0,128:0:0:128:4593:-413.532,-38.5318,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:64:1,63:1:36:63:2260:-200.064,-15.6676,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:86:0,86:0:0:86:3062:-275.809,-25.8886,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:49:18,31:18:603:31:1112:-85.6409,0,-39.831	1/1:77:0,77:0:0:77:2757:-248.37,-23.1793,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:223:110,113:110:3921:113:4057:-298.185,0,-285.953	1/1:150:4,146:4:144:146:5182:-452.189,-31.8409,0	0/1:53:22,31:22:792:31:1116:-84.7971,0,-55.6511	0/1:71:46,25:46:1648:25:888:-58.8659,0,-127.235	1/1:127:1,126:1:36:126:4521:-403.457,-34.6325,0	0/1:57:32,25:32:1118:25:900:-64.1623,0,-83.7648	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:105:2,102:2:72:102:3638:-320.785,-24.8302,0	1/1:89:0,89:0:0:89:3188:-287.141,-26.7917,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:72:0,72:0:0:72:2542:-229.029,-21.6742,0	0/1:73:40,33:40:1432:33:1188:-85.2534,0,-107.202	1/1:158:0,158:0:0:158:5668:-510.227,-47.5627,0	0/1:135:65,70:65:2317:70:2504:-184.974,0,-168.15	0/1:32:17,15:17:604:15:540:-39.3036,0,-45.0576	1/1:121:0,121:0:0:121:4307:-387.807,-36.4246,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:92:0,92:0:0:92:3294:-296.657,-27.6948,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:170:1,168:1:36:168:6025:-538.753,-47.6356,0	0/1:102:51,51:51:1805:51:1832:-134.453,0,-132.025	1/1:61:0,60:0:0:60:2156:-193.947,-18.0618,0	0/1:77:38,39:38:1364:39:1400:-103.12,0,-99.8814	0/1:152:84,68:84:2974:68:2435:-173.648,0,-222.135	0/1:42:23,19:23:813:19:680:-48.8859,0,-60.8458	0/1:82:49,32:49:1756:32:1148:-78.8866,0,-133.581	0/1:58:20,38:20:720:38:1360:-105.241,0,-47.669	0/1:29:17,12:17:597:12:432:-30.4913,0,-45.3263	0/1:70:30,40:30:1053:40:1425:-107.473,0,-74.0065	0/1:64:48,16:48:1705:16:576:-32.9091,0,-134.468	1/1:99:0,99:0:0:99:3549:-319.616,-29.802,0	1/1:91:0,91:0:0:91:3249:-292.63,-27.3937,0
chr06	30986099	.	T	C	73252.4	PASS	AB=0.495505;ABP=4.18161;AC=50;AF=0.268817;AN=186;AO=3336;CIGAR=1X;DP=12560;DPB=12560;DPRA=1.17233;EPP=7247.04;EPPR=20021.8;GTI=1;LEN=1;MEANALT=1.06154;MQM=59.9433;MQMR=59.9663;NS=93;NUMALT=1;ODDS=2.22421;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116770;QR=328149;RO=9219;RPL=1451;RPP=125.615;RPPR=325.997;RPR=1885;RUN=1;SAF=1451;SAP=125.615;SAR=1885;SRF=4024;SRP=325.997;SRR=5195;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:19,19:19:684:19:671:-49.2767,0,-50.4512	0/1:126:67,59:67:2380:59:2062:-147.918,0,-176.518	0/1:129:65,64:65:2336:64:2232:-162.307,0,-171.666	0/0:272:271,1:271:9682:1:36:0,-78.2819,-867.734	0/0:60:59,1:59:2112:1:36:0,-14.4635,-186.751	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/0:142:142,0:142:5055:0:0:0,-42.7463,-455.073	0/1:103:58,45:58:2072:45:1567:-110.312,0,-155.745	0/0:199:198,1:198:7032:1:36:0,-56.3067,-629.349	0/1:147:75,72:75:2666:72:2522:-182.978,0,-195.934	0/1:134:71,63:71:2520:63:2207:-157.998,0,-186.715	0/0:178:178,0:178:6349:0:0:0,-53.5833,-571.501	0/0:164:164,0:164:5796:0:0:0,-49.3689,-521.531	0/1:250:130,120:130:4627:120:4180:-301.118,0,-341.338	0/1:153:83,70:83:2980:70:2427:-172.628,0,-222.374	0/0:107:107,0:107:3755:0:0:0,-32.2102,-338.151	0/0:155:155,0:155:5504:0:0:0,-46.6596,-495.489	0/0:106:106,0:106:3764:0:0:0,-31.9092,-338.963	0/1:99:47,52:47:1662:52:1809:-133.288,0,-120.064	0/0:156:156,0:156:5577:0:0:0,-46.9607,-502.052	0/0:216:214,2:214:7626:2:68:0,-58.5667,-679.922	0/1:53:13,40:13:434:40:1416:-111.783,0,-23.4229	0/1:147:71,76:71:2526:76:2663:-195.663,0,-183.339	0/0:76:74,2:74:2644:2:72:0,-16.0416,-231.37	0/1:69:37,32:37:1328:32:1125:-80.7844,0,-99.0512	0/1:366:192,174:192:6834:174:6077:-436.774,0,-504.957	0/1:242:138,104:138:4918:104:3691:-259.543,0,-369.923	0/1:62:28,34:28:995:34:1181:-87.9253,0,-71.2002	0/1:239:127,112:127:4520:112:3976:-286.085,0,-335.022	0/1:139:81,58:81:2883:58:2047:-142.656,0,-217.828	0/1:248:124,124:124:4447:124:4420:-323.316,0,-325.744	0/1:5:3,2:3:108:2:68:-4.95157,0,-8.57002	0/1:10:2,8:2:72:8:280:-22.529,0,-3.82642	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:339:338,0:338:12017:0:0:0,-101.748,-1081.16	0/1:117:48,68:48:1711:68:2390:-180.079,0,-118.996	0/1:138:64,74:64:2276:74:2581:-190.996,0,-163.56	.:.:.:.:.:.:.:.	0/1:126:77,49:77:2756:49:1729:-117.963,0,-210.352	0/1:72:38,34:38:1348:34:1178:-84.6464,0,-99.9461	0/1:105:56,49:56:1996:49:1726:-124.015,0,-148.306	0/1:213:90,123:90:3228:123:4260:-319.462,0,-226.622	0/0:124:124,0:124:4419:0:0:0,-37.3277,-397.883	0/0:128:128,0:128:4547:0:0:0,-38.5318,-409.397	0/1:116:52,63:52:1851:63:2236:-166.523,0,-131.891	0/0:147:147,0:147:5221:0:0:0,-44.2514,-470.031	0/1:139:76,63:76:2693:63:2193:-155.789,0,-200.771	0/1:155:87,68:87:3100:68:2360:-165.999,0,-232.569	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/1:9:4,5:4:140:5:171:-13.0162,0,-10.2353	0/0:93:93,0:93:3297:0:0:0,-27.9958,-296.95	0/0:86:85,1:85:3030:1:36:0,-22.2903,-269.332	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:152:150,2:150:5371:2:72:0,-38.9198,-476.684	0/0:57:56,1:56:1987:1:36:0,-13.5604,-175.505	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:101:55,46:55:1942:46:1614:-115.144,0,-144.648	0/0:211:203,8:203:7209:8:260:0,-39.8011,-625.152	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:223:117,106:117:4182:106:3736:-269.315,0,-309.431	0/0:191:185,5:185:6582:5:171:0,-41.8271,-575.501	0/1:101:56,44:56:2004:44:1559:-110.138,0,-150.171	0/1:71:35,36:35:1243:36:1247:-91.1549,0,-90.8007	0/0:331:330,1:330:11798:1:36:0,-96.0426,-1058.07	0/1:136:43,93:43:1528:93:3284:-254.841,0,-96.873	0/0:93:92,1:92:3263:1:36:0,-24.3975,-290.294	0/0:93:92,1:92:3274:1:36:0,-24.3975,-291.212	0/0:163:163,0:163:5774:0:0:0,-49.0679,-518.33	0/1:14:11,3:11:383:3:108:-5.86075,0,-30.5518	0/0:124:124,0:124:4407:0:0:0,-37.3277,-396.718	0/1:104:56,48:56:2004:48:1692:-120.828,0,-149.326	0/0:297:296,1:296:10572:1:36:0,-85.8076,-947.751	0/1:163:88,75:88:3140:75:2684:-192.181,0,-233.756	0/1:76:34,42:34:1220:42:1444:-107.371,0,-87.2285	0/0:149:149,0:149:5332:0:0:0,-44.8535,-479.931	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:123:123,0:123:4319:0:0:0,-37.0267,-388.888	0/0:152:152,0:152:5427:0:0:0,-45.7566,-488.561	0/0:235:235,0:235:8348:0:0:0,-70.742,-751.331	0/1:202:123,79:123:4392:79:2749:-186.847,0,-334.646	0/0:135:135,0:135:4804:0:0:0,-40.639,-432.514	0/1:203:107,96:107:3782:96:3339:-239.619,0,-279.473	0/1:398:206,192:206:7283:192:6716:-484.716,0,-535.704	0/1:88:44,44:44:1553:44:1564:-114.561,0,-113.569	0/1:156:77,79:77:2755:79:2707:-196.91,0,-201.231	0/1:147:74,73:74:2643:73:2533:-183.969,0,-193.865	0/1:114:61,53:61:2154:53:1849:-132.367,0,-159.809	0/1:203:82,121:82:2898:121:4175:-314.826,0,-199.948	0/1:208:63,145:63:2239:145:5053:-392.312,0,-139.159	0/0:177:176,1:176:6285:1:21:0,-51.1824,-563.644	0/0:223:223,0:223:7906:0:0:0,-67.1297,-711.572
chr06	31072734	.	A	T	29905.8	PASS	AB=0.526649;ABP=23.4951;AC=49;AF=0.260638;AN=188;AO=1760;CIGAR=1X;DP=6189;DPB=6189;DPRA=1.23211;EPP=3824.8;EPPR=9607.43;GTI=0;LEN=1;MEANALT=1.05357;MQM=59.9949;MQMR=59.9995;NS=94;NUMALT=1;ODDS=5.43686;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62941;QR=157681;RO=4423;RPL=1760;RPP=3824.8;RPPR=9607.43;RPR=0;RUN=1;SAF=1760;SAP=3824.8;SAR=0;SRF=4423;SRP=9607.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:16,23:16:568:23:828:-63.1039,0,-39.7117	0/1:43:24,19:24:856:19:676:-48.2231,0,-64.4168	0/1:73:36,37:36:1272:37:1308:-96.045,0,-92.8049	0/0:167:167,0:167:5972:0:0:0,-50.272,-537.587	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:64:64,0:64:2262:0:0:0,-19.2659,-203.84	0/1:35:21,14:21:756:14:504:-35.162,0,-57.8312	0/0:83:81,2:81:2885:2:72:0,-18.1488,-253.049	0/1:44:20,24:20:701:24:851:-63.6641,0,-50.1664	0/1:101:54,47:54:1936:47:1688:-121.803,0,-144.112	0/0:123:123,0:123:4373:0:0:0,-37.0267,-393.745	0/0:78:75,0:75:2672:0:0:0,-22.5772,-240.367	0/1:60:37,23:37:1324:23:824:-56.4215,0,-101.4	0/1:57:35,22:35:1237:22:788:-54.0861,0,-94.4736	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.509	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6397	0/1:36:21,14:21:748:14:500:-34.4405,0,-56.7496	0/0:84:82,2:82:2917:2:72:0,-18.4498,-255.928	0/0:97:97,0:97:3445:0:0:0,-29.1999,-310.263	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:94:35,59:35:1256:59:2120:-162.772,0,-85.0485	0/0:43:43,0:43:1516:0:0:0,-12.9443,-136.73	0/1:41:16,25:16:576:25:900:-68.9788,0,-39.8328	0/1:167:72,95:72:2565:95:3412:-257.021,0,-180.827	0/1:196:97,99:97:3461:99:3564:-261.964,0,-252.698	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/1:131:61,70:61:2173:70:2484:-184.377,0,-156.4	0/1:93:36,57:36:1292:57:2052:-156.956,0,-88.588	0/1:90:52,38:52:1860:38:1360:-95.6079,0,-140.587	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:22:7,15:7:252:15:527:-41.1375,0,-16.4063	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:142:142,0:142:5071:0:0:0,-42.7463,-456.533	0/1:79:23,55:23:824:55:1948:-151.755,0,-50.6432	0/1:85:42,43:42:1493:43:1532:-112.585,0,-109.075	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:105:55,50:55:1980:50:1800:-130.674,0,-146.866	0/1:45:23,22:23:824:22:784:-57.3376,0,-60.937	0/1:67:35,32:35:1252:32:1152:-83.8211,0,-92.8161	0/1:54:27,27:27:964:27:968:-71.1817,0,-70.8212	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:70:70,0:70:2505:0:0:0,-21.0721,-225.701	0/1:37:17,20:17:595:20:720:-53.9907,0,-42.7386	0/0:94:94,0:94:3338:0:0:0,-28.2968,-300.636	0/1:68:32,36:32:1148:36:1287:-95.6628,0,-83.1598	0/1:89:44,45:44:1580:45:1616:-118.938,0,-115.7	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:12:6,6:6:212:6:212:-15.8124,0,-15.8124	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.835	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4154	0/0:104:104,0:104:3709:0:0:0,-31.3071,-334.011	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:72:34,38:34:1205:38:1360:-101.016,0,-87.0797	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:130:71,59:71:2536:59:2124:-152.294,0,-189.358	0/0:68:68,0:68:2382:0:0:0,-20.47,-214.633	0/1:30:13,17:13:468:17:584:-43.8499,0,-33.4287	0/1:57:31,26:31:1112:26:898:-63.9713,0,-83.2326	0/0:139:136,3:136:4806:3:93:0,-33.1664,-424.02	0/1:134:46,88:46:1644:88:3159:-244.196,0,-107.911	0/0:73:73,0:73:2587:0:0:0,-21.9752,-233.08	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:29:15,14:15:521:14:504:-36.9682,0,-38.4865	0/0:98:97,1:97:3465:1:36:0,-25.9027,-308.462	0/1:28:10,18:10:360:18:644:-49.8618,0,-24.3155	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.751	0/1:82:40,42:40:1436:42:1512:-111.69,0,-104.853	0/1:28:13,15:13:464:15:540:-40.5077,0,-33.6687	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:41:40,1:40:1436:1:36:0,-8.74395,-125.939	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.135	0/0:135:134,1:134:4792:1:21:0,-38.5391,-429.337	0/1:34:14,20:14:496:20:707:-53.7196,0,-34.7392	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:43:21,21:21:756:21:756:-55.3641,0,-55.3641	0/1:116:54,62:54:1924:62:2216:-164.785,0,-138.517	0/1:20:10,10:10:356:10:360:-26.7237,0,-26.3606	0/1:67:35,32:35:1239:32:1152:-83.8211,0,-91.6446	0/1:85:37,48:37:1324:48:1720:-129.498,0,-93.8745	0/1:85:42,43:42:1496:43:1535:-112.855,0,-109.347	0/1:180:93,87:93:3315:87:3100:-225.04,0,-244.383	0/1:89:25,64:25:878:64:2291:-179.659,0,-52.5442	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/0:90:89,1:89:3154:1:36:0,-23.4944,-280.485
chr06	31127857	.	A	C	45003.8	PASS	AB=0.533087;ABP=49.2797;AC=50;AF=0.265957;AN=188;AO=2608;CIGAR=1X;DP=9434;DPB=9434;DPRA=1.24464;EPP=5657.53;EPPR=14795.1;GTI=1;LEN=1;MEANALT=1.03636;MQM=59.954;MQMR=59.9285;NS=94;NUMALT=1;ODDS=0.0955975;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93356;QR=242744;RO=6824;RPL=1;RPP=5657.53;RPPR=14803.8;RPR=2607;RUN=1;SAF=2608;SAP=5666.21;SAR=0;SRF=6823;SRP=14812.5;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:82:45,37:45:1604:37:1324:-94.7079,0,-119.966	0/1:59:25,34:25:896:34:1220:-92.346,0,-63.1546	0/1:279:118,161:118:4196:161:5760:-434.529,0,-293.817	0/0:236:235,1:235:8312:1:36:0,-67.4448,-744.478	0/0:112:112,0:112:3985:0:0:0,-33.7154,-358.841	0/0:44:41,3:41:1468:3:108:0,-3.17015,-122.33	0/0:85:85,0:85:3003:0:0:0,-25.5875,-270.468	0/1:148:83,65:83:2969:65:2323:-164.777,0,-222.889	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/1:66:26,40:26:936:40:1432:-109.29,0,-64.6915	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:28:17,11:17:593:11:396:-27.5539,0,-45.2656	0/1:41:17,24:17:593:24:864:-65.7403,0,-41.3525	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:275:275,0:275:9754:0:0:0,-82.7832,-877.755	0/0:116:116,0:116:4157:0:0:0,-34.9195,-374.118	0/0:348:347,1:347:12308:1:36:0,-101.16,-1103.96	0/1:121:54,67:54:1879:67:2391:-179.015,0,-132.959	0/0:88:88,0:88:3137:0:0:0,-26.4906,-282.547	0/1:133:69,64:69:2446:64:2288:-166.145,0,-180.338	0/1:285:119,166:119:4207:166:5953:-450.08,0,-292.747	0/1:285:126,159:126:4475:159:5679:-425.379,0,-317.107	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:378:197,181:197:6935:181:6491:-470.477,0,-510.429	0/1:159:65,94:65:2283:94:3376:-256.191,0,-157.864	0/1:138:62,76:62:2220:76:2720:-203.501,0,-158.511	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:10:3,7:3:108:7:237:-18.6488,0,-7.06487	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:101:101,0:101:3571:0:0:0,-30.404,-321.596	0/1:197:90,107:90:3213:107:3823:-284.963,0,-230.088	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:176:92,84:92:3300:84:3016:-218.671,0,-244.237	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:198:88,110:88:3145:110:3926:-293.928,0,-223.67	0/1:25:16,9:16:568:9:324:-21.9801,0,-43.9261	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:106:106,0:106:3702:0:0:0,-31.9092,-333.379	0/1:175:93,82:93:3321:82:2948:-212.865,0,-246.157	0/0:217:216,1:216:7658:1:36:0,-61.7252,-685.386	0/1:135:58,77:58:2061:77:2737:-205.933,0,-145.12	0/1:104:45,59:45:1590:59:2108:-158.682,0,-112.079	0/0:126:126,0:126:4482:0:0:0,-37.9298,-401.974	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/0:172:172,0:172:6164:0:0:0,-51.7772,-554.846	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:170:170,0:170:6009:0:0:0,-51.1751,-540.907	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:81:33,47:33:1169:47:1684:-127.405,0,-81.0732	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:13:5,8:5:165:8:288:-22.354,0,-11.2602	0/1:246:120,126:120:4243:126:4516:-332.554,0,-307.996	0/0:202:202,0:202:7214:0:0:0,-60.8081,-649.313	0/1:67:34,33:34:1205:33:1175:-85.8888,0,-88.5849	0/1:109:68,41:68:2433:41:1476:-100.324,0,-186.411	0/0:165:162,3:162:5740:3:108:0,-39.5948,-506.636	0/1:173:54,119:54:1932:119:4240:-329.7,0,-121.949	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.619	0/0:32:32,0:32:1125:0:0:0,-9.63296,-101.556	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/0:154:154,0:154:5505:0:0:0,-46.3586,-495.541	0/1:65:41,24:41:1468:24:864:-58.5156,0,-112.849	0/0:109:109,0:109:3866:0:0:0,-32.8123,-348.135	0/1:297:99,198:99:3556:198:7107:-550.28,0,-230.841	0/1:173:84,89:84:2987:89:3174:-233.758,0,-216.985	0/0:94:94,0:94:3353:0:0:0,-28.2968,-301.96	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:131:129,2:129:4617:2:72:0,-32.5982,-408.855	0/0:195:195,0:195:6958:0:0:0,-58.7008,-626.249	0/0:429:429,0:429:15282:0:0:0,-129.142,-1375.1	0/1:29:12,17:12:424:17:608:-46.3222,0,-29.7665	0/0:37:37,0:37:1324:0:0:0,-11.1381,-118.684	0/1:23:16,7:16:568:7:248:-15.7405,0,-44.5236	0/1:72:41,31:41:1472:31:1104:-77.9965,0,-111.102	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/1:47:21,26:21:752:26:936:-70.4111,0,-53.8578	0/1:51:31,19:31:1116:19:684:-46.479,0,-85.3404	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/1:31:21,10:21:744:10:360:-23.4124,0,-57.9524	0/1:33:13,20:13:468:20:716:-54.8337,0,-32.5257	0/0:111:111,0:111:3961:0:0:0,-33.4143,-356.663	0/0:63:63,0:63:2222:0:0:0,-18.9649,-200.241
chr06	31127883	.	C	T	139073	PASS	AB=0.464907;ABP=54.067;AC=138;AF=0.734043;AN=188;AO=6677;CIGAR=1X;DP=9249;DPB=9249;DPRA=49.7151;EPP=14493.2;EPPR=5577.18;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9492;MQMR=59.9541;NS=94;NUMALT=1;ODDS=0.137468;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238420;QR=91550;RO=2571;RPL=6676;RPP=14493.2;RPPR=5577.18;RPR=1;RUN=1;SAF=6677;SAP=14501.9;SAR=0;SRF=2571;SRP=5585.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:37,44:37:1323:44:1556:-115.946,0,-94.9879	0/1:60:34,26:34:1195:26:908:-63.9629,0,-89.7928	0/1:276:157,119:157:5588:119:4238:-298.514,0,-419.957	1/1:228:1,227:1:36:227:8105:-725.867,-65.0366,0	1/1:111:0,111:0:0:111:3987:-359.018,-33.4143,0	1/1:40:3,37:3:108:37:1328:-109.747,-1.96603,0	1/1:83:0,83:0:0:83:2968:-267.348,-24.9855,0	0/1:144:65,79:65:2309:79:2800:-208.891,0,-164.721	1/1:79:0,79:0:0:79:2844:-256.197,-23.7814,0	0/1:66:41,25:41:1455:25:896:-61.0924,0,-111.359	0/1:16:7,9:7:252:9:316:-23.9624,0,-18.2125	1/1:51:0,51:0:0:51:1810:-163.18,-15.3525,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:28:11,17:11:396:17:603:-46.1625,0,-27.5539	0/1:41:24,17:24:864:17:608:-42.7098,0,-65.7403	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:269:1,268:1:36:268:9576:-858.14,-77.3788,0	1/1:112:0,112:0:0:112:3986:-358.738,-33.7154,0	1/1:352:1,351:1:36:351:12569:-1127.44,-102.364,0	0/1:119:66,53:66:2352:53:1895:-135.005,0,-176.099	1/1:83:0,83:0:0:83:2944:-265.191,-24.9855,0	0/1:132:65,67:65:2307:67:2378:-174.524,0,-168.154	0/1:282:163,119:163:5807:119:4242:-297.069,0,-437.852	0/1:277:155,122:155:5521:122:4329:-306.401,0,-413.362	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:370:178,192:178:6366:192:6888:-508.604,0,-461.642	0/1:157:93,64:93:3314:64:2285:-158.648,0,-251.217	0/1:134:76,58:76:2693:58:2055:-144.882,0,-202.276	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	0/1:194:105,89:105:3728:89:3192:-229.103,0,-277.321	0/1:15:3,12:3:108:12:419:-33.5272,0,-5.55972	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:171:81,90:81:2882:90:3236:-239.984,0,-208.137	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:193:105,88:105:3759:88:3112:-222.208,0,-280.41	0/1:23:8,15:8:288:15:540:-42.0128,0,-19.3437	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:105:0,105:0:0:105:3747:-337.431,-31.6082,0	0/1:170:80,90:80:2846:90:3198:-236.825,0,-205.203	1/1:214:1,213:1:36:213:7547:-675.615,-60.8221,0	0/1:129:74,55:74:2628:55:1958:-137.661,0,-197.933	0/1:103:58,45:58:2072:45:1612:-114.359,0,-155.745	1/1:120:0,120:0:0:120:4313:-388.345,-36.1236,0	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	1/1:169:0,169:0:0:169:6067:-546.121,-50.8741,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:166:2,164:2:72:164:5874:-521.931,-43.1343,0	1/1:59:0,59:0:0:59:2111:-190.258,-17.7608,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:81:49,32:49:1744:32:1152:-79.6067,0,-132.861	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:238:124,114:124:4397:114:4073:-295.11,0,-324.258	1/1:203:0,203:0:0:203:7258:-653.273,-61.1091,0	0/1:65:32,33:32:1130:33:1184:-87.3014,0,-82.44	0/1:107:40,67:40:1427:67:2404:-184.406,0,-96.5166	1/1:156:3,153:3:100:153:5476:-483.637,-37.6302,0	0/1:172:119,53:119:4233:53:1882:-117.75,0,-329.345	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:102:0,102:0:0:102:3645:-328.254,-30.7051,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:21:9,12:9:320:12:432:-32.8996,0,-22.8207	1/1:152:0,152:0:0:152:5437:-489.448,-45.7566,0	0/1:63:23,40:23:820:40:1427:-109.762,0,-55.1576	1/1:111:0,110:0:0:110:3890:-349.973,-33.1133,0	0/1:293:197,96:197:7032:96:3444:-221.971,0,-544.74	0/1:173:90,83:90:3198:83:2942:-212.934,0,-235.92	1/1:90:0,90:0:0:90:3185:-286.871,-27.0927,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:131:3,128:3:108:128:4580:-402.29,-29.3598,0	1/1:193:0,193:0:0:193:6886:-619.809,-58.0988,0	1/1:419:0,419:0:0:419:14943:-1344.6,-126.132,0	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0491	1/1:36:0,36:0:0:36:1292:-116.092,-10.8371,0	0/1:22:7,15:7:248:15:525:-40.9561,0,-16.0415	0/1:73:32,41:32:1130:41:1472:-110.801,0,-80.0317	0/1:15:9,6:9:324:6:208:-14.5436,0,-24.9904	0/1:45:24,21:24:860:21:747:-54.008,0,-64.1755	0/1:52:20,32:20:716:32:1152:-88.3366,0,-49.1142	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/1:31:10,21:10:351:21:748:-58.3134,0,-22.5947	0/1:31:19,12:19:667:12:432:-29.8893,0,-51.0227	1/1:110:0,110:0:0:110:3935:-354.324,-33.1133,0	1/1:62:0,62:0:0:62:2205:-198.714,-18.6639,0
chr06	31286164	.	A	C	15892.2	PASS	AB=0.440752;ABP=72.7414;AC=44;AF=0.23913;AN=184;AO=1012;CIGAR=1X;DP=4585;DPB=4585;DPRA=1.1217;EPP=2200.54;EPPR=7757.34;GTI=0;LEN=1;MEANALT=1;MQM=59.9377;MQMR=59.967;NS=92;NUMALT=1;ODDS=6.2372;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36177;QR=127905;RO=3571;RPL=1012;RPP=2200.54;RPPR=7757.34;RPR=0;RUN=1;SAF=0;SAP=2200.54;SAR=1012;SRF=0;SRP=7757.34;SRR=3571;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:24,18:24:849:18:648:-46.0086,0,-64.0842	0/1:31:14,17:14:500:17:608:-45.7201,0,-36.0042	0/1:83:49,34:49:1760:34:1220:-85.1213,0,-133.698	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/1:96:56,40:56:2004:40:1409:-98.2063,0,-151.735	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.239	0/1:43:28,15:28:1004:15:536:-34.9999,0,-77.7316	0/1:18:5,13:5:180:13:464:-36.679,0,-11.1335	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/1:29:16,13:16:567:13:464:-33.3676,0,-42.6309	0/1:36:16,20:16:576:20:712:-53.5696,0,-41.3379	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/1:59:49,10:49:1760:10:360:-14.9835,0,-140.923	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:59:46,13:46:1652:13:464:-24.3367,0,-131.208	0/1:124:66,58:66:2355:58:2088:-150.861,0,-174.794	0/1:108:66,42:66:2356:42:1504:-103.143,0,-179.788	0/1:12:3,9:3:104:9:320:-25.53,0,-6.09045	0/1:58:33,25:33:1188:25:892:-63.1399,0,-89.7689	0/1:68:32,36:32:1152:36:1284:-95.3934,0,-83.5201	0/1:62:33,29:33:1188:29:1032:-74.5296,0,-88.5647	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:84:84,0:84:3015:0:0:0,-25.2865,-271.494	0/1:110:77,33:77:2755:33:1188:-74.1153,0,-215.078	0/1:29:11,18:11:396:18:644:-49.5607,0,-27.2529	.:.:.:.:.:.:.:.	0/1:34:21,13:21:756:13:468:-32.2237,0,-58.1322	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/1:90:50,40:50:1788:40:1440:-102.805,0,-134.11	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/0:20:19,0:19:684:0:0:0,-5.71957,-61.5301	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:57:42,15:42:1512:15:536:-31.4161,0,-119.211	0/0:95:95,0:95:3389:0:0:0,-28.5978,-305.224	0/1:25:8,17:8:284:17:612:-47.8877,0,-18.3776	0/1:59:32,27:32:1144:27:972:-70.0371,0,-85.5087	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:106:105,0:105:3767:0:0:0,-31.6081,-338.868	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.322	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:23:13,10:13:464:10:360:-25.8206,0,-35.1738	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:87:45,42:45:1601:42:1504:-109.465,0,-118.183	0/0:112:109,3:109:3889:3:108:0,-23.6402,-340.128	0/1:30:19,11:19:680:11:381:-25.5897,0,-52.4983	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.501	0/1:131:53,78:53:1904:78:2775:-210.546,0,-132.203	0/0:25:24,1:24:860:1:36:0,-3.92747,-74.1236	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.872	0/1:25:14,11:14:500:11:392:-28.0943,0,-37.8104	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:71:28,43:28:1008:43:1536:-117.16,0,-69.6632	0/0:112:112,0:112:4028:0:0:0,-33.7154,-362.549	0/1:73:32,41:32:1152:41:1453:-109.088,0,-82.015	0/1:86:72,14:72:2572:14:500:-19.4467,0,-205.841	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.655	0/1:36:13,23:13:468:23:828:-64.007,0,-31.6226	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:18:12,6:12:432:6:212:-14.0063,0,-33.8027	0/1:59:35,24:35:1252:24:864:-60.3218,0,-95.2243	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	0/1:33:19,14:19:680:14:500:-35.4022,0,-51.5952	0/1:38:28,10:28:1008:10:356:-20.9421,0,-79.5972	0/1:72:44,28:44:1576:28:995:-68.1889,0,-120.457	0/1:45:9,36:9:315:36:1292:-103.037,0,-15.1409	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.788	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35
chr06	31286203	.	C	A	132652	PASS	AB=0.498126;ABP=3.15681;AC=135;AF=0.741758;AN=182;AO=6208;CIGAR=1X;DP=8629;DPB=8629;DPRA=0;EPP=12713.1;EPPR=4935;GTI=1;LEN=1;MEANALT=1.03297;MQM=59.9396;MQMR=59.9429;NS=91;NUMALT=1;ODDS=0.815802;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222047;QR=85783;RO=2417;RPL=90;RPP=12713.1;RPPR=4935;RPR=6118;RUN=1;SAF=6208;SAP=13483.5;SAR=0;SRF=2417;SRP=5251.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:11,21:11:392:21:756:-58.7343,0,-25.9871	0/1:45:32,13:32:1144:13:464:-28.5512,0,-89.7199	0/1:118:49,69:49:1736:69:2465:-186.582,0,-121.003	1/1:179:0,179:0:0:179:6389:-575.1,-53.8844,0	1/1:62:1,61:1:36:61:2180:-192.84,-15.0656,0	1/1:58:0,58:0:0:58:2063:-185.939,-17.4597,0	1/1:64:0,64:0:0:64:2282:-205.635,-19.2659,0	0/1:206:120,86:120:4230:86:3063:-213.767,0,-318.869	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:120:64,56:64:2249:56:1994:-143.34,0,-166.549	0/1:93:45,48:45:1596:48:1718:-126.91,0,-115.934	1/1:79:0,79:0:0:79:2820:-254.04,-23.7814,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	0/1:135:54,80:54:1908:80:2863:-217.209,0,-131.3	0/1:68:41,27:41:1472:27:966:-66.7868,0,-112.176	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:106:0,106:0:0:106:3812:-343.275,-31.9092,0	1/1:60:0,60:0:0:60:2156:-194.289,-18.0618,0	0/1:27:14,13:14:492:13:468:-34.3318,0,-36.4845	1/1:132:0,132:0:0:132:4736:-426.397,-39.736,0	1/1:73:0,73:0:0:73:2587:-233.054,-21.9752,0	1/1:144:0,144:0:0:144:5151:-463.719,-43.3483,0	0/1:84:39,45:39:1396:45:1612:-120.084,0,-100.653	1/1:90:1,89:1:36:89:3192:-283.905,-23.4944,0	0/1:52:25,27:25:884:27:963:-71.3332,0,-64.2248	0/1:259:148,111:148:5272:111:3948:-277.389,0,-396.653	0/1:212:110,102:110:3907:102:3652:-265.065,0,-287.92	0/1:33:20,13:20:708:13:464:-32.1635,0,-54.1116	0/1:293:130,163:130:4639:163:5812:-434.984,0,-329.145	0/1:104:49,55:49:1756:55:1958:-145.156,0,-127.017	0/1:169:85,84:85:3002:84:3016:-220.795,0,-219.539	.:.:.:.:.:.:.:.	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	1/1:192:0,192:0:0:192:6891:-620.254,-57.7978,0	0/1:183:97,86:97:3468:86:3078:-222.159,0,-257.244	0/1:73:35,38:35:1235:38:1364:-101.086,0,-89.4783	.:.:.:.:.:.:.:.	0/1:152:75,77:75:2653:77:2754:-202.345,0,-193.259	0/1:32:19,13:19:680:13:468:-32.8267,0,-51.8962	0/1:131:58,73:58:2080:73:2594:-194.273,0,-148.035	0/1:94:51,43:51:1803:43:1548:-111.316,0,-134.254	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	1/1:75:0,75:0:0:75:2673:-240.814,-22.5773,0	0/1:104:42,62:42:1508:62:2224:-169.117,0,-104.707	1/1:200:3,195:3:108:195:6975:-617.693,-49.8886,0	0/1:112:54,58:54:1907:58:2080:-153.755,0,-138.191	0/1:181:98,83:98:3467:83:2971:-213.136,0,-257.753	1/1:106:0,106:0:0:106:3804:-342.557,-31.9092,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:91:0,91:0:0:91:3241:-291.896,-27.3937,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:100:0,100:0:0:100:3576:-322.047,-30.103,0	1/1:34:0,34:0:0:34:1208:-108.998,-10.235,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:80:31,49:31:1112:49:1760:-134.601,0,-76.3089	1/1:119:0,119:0:0:119:4242:-381.959,-35.8226,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:263:114,149:114:4045:149:5336:-401.202,0,-285.068	1/1:128:0,128:0:0:128:4577:-412.089,-38.5318,0	0/1:58:29,29:29:1016:29:1040:-76.4546,0,-74.292	0/1:90:37,53:37:1324:53:1904:-144.533,0,-92.3694	1/1:105:1,104:1:36:104:3728:-332.122,-28.0099,0	0/1:27:17,10:17:612:10:360:-24.6165,0,-47.2856	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:30:0,30:0:0:30:1061:-95.8002,-9.0309,0	1/1:99:0,99:0:0:99:3551:-319.797,-29.802,0	0/1:19:9,10:9:315:10:356:-26.6617,0,-22.9677	1/1:126:0,126:0:0:126:4507:-405.798,-37.9298,0	0/1:74:39,35:39:1370:35:1252:-90.7089,0,-101.321	1/1:186:0,186:0:0:186:6626:-596.396,-55.9916,0	0/1:179:94,85:94:3335:85:3048:-220.665,0,-246.485	0/1:145:79,66:79:2803:66:2343:-167.475,0,-208.861	1/1:126:2,124:2:72:124:4448:-393.653,-31.0931,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:102:0,102:0:0:102:3642:-327.985,-30.7051,0	1/1:153:0,153:0:0:153:5451:-490.718,-46.0576,0	1/1:144:0,143:0:0:143:5110:-459.683,-43.0473,0	0/1:91:45,46:45:1595:46:1642:-120.675,0,-116.446	1/1:67:0,67:0:0:67:2382:-214.636,-20.169,0	0/1:87:43,44:43:1520:44:1584:-116.662,0,-110.904	0/1:151:71,80:71:2505:80:2863:-212.451,0,-180.247	0/1:43:25,18:25:900:18:644:-45.3463,0,-68.3767	0/1:69:39,30:39:1392:30:1080:-76.7422,0,-104.805	0/1:65:30,35:30:1059:35:1256:-93.7783,0,-76.0535	0/1:54:23,31:23:811:31:1112:-84.1357,0,-57.0543	0/1:105:54,51:54:1893:51:1832:-133.542,0,-139.038	0/1:69:51,18:51:1800:18:648:-37.8808,0,-141.508	1/1:111:0,111:0:0:111:3963:-356.544,-33.4143,0	1/1:99:0,99:0:0:99:3560:-320.599,-29.802,0
chr06	31286245	.	A	G	112003	PASS	AB=0.489687;ABP=6.99645;AC=137;AF=0.744565;AN=184;AO=5560;CIGAR=1X;DP=7772;DPB=7772;DPRA=0;EPP=12076.4;EPPR=4778.11;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9662;MQMR=59.9362;NS=92;NUMALT=1;ODDS=0.155166;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195533;QR=78223;RO=2211;RPL=5560;RPP=12076.4;RPPR=4778.11;RPR=0;RUN=1;SAF=5560;SAP=12076.4;SAR=0;SRF=2211;SRP=4804.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:10,18:10:360:18:640:-49.5005,0,-24.3155	0/1:43:30,13:30:1072:13:460:-28.7911,0,-83.8449	0/1:107:44,63:44:1560:63:2248:-170.373,0,-108.481	1/1:159:1,158:1:36:158:5573:-498.104,-44.2655,0	1/1:51:1,50:1:36:50:1734:-152.742,-11.7543,0	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0	1/1:58:0,58:0:0:58:2037:-183.601,-17.4597,0	0/1:181:105,76:105:3720:76:2692:-187.906,0,-280.512	1/1:50:0,50:0:0:50:1780:-160.483,-15.0515,0	0/1:111:59,52:59:2103:52:1848:-133.186,0,-156.125	0/1:87:43,44:43:1507:44:1541:-112.79,0,-109.73	1/1:72:0,72:0:0:72:2548:-229.572,-21.6742,0	1/1:82:0,82:0:0:82:2912:-262.317,-24.6845,0	0/1:114:47,67:47:1639:67:2353:-177.711,0,-113.477	0/1:64:40,24:40:1405:24:851:-57.6435,0,-107.349	1/1:37:0,37:0:0:37:1294:-116.76,-11.1381,0	1/1:94:0,94:0:0:94:3340:-300.819,-28.2968,0	1/1:52:0,52:0:0:52:1824:-164.423,-15.6536,0	0/1:22:12,10:12:428:10:360:-26.1216,0,-32.2361	1/1:121:0,121:0:0:121:4272:-384.66,-36.4246,0	1/1:59:0,59:0:0:59:2085:-187.896,-17.7608,0	1/1:129:0,129:0:0:129:4545:-409.194,-38.8329,0	0/1:78:35,43:35:1239:43:1514:-113.071,0,-88.3333	1/1:81:1,80:1:36:80:2809:-249.453,-20.7852,0	0/1:44:23,21:23:810:21:739:-53.5871,0,-59.9737	0/1:243:141,102:141:4962:102:3529:-244.623,0,-373.585	0/1:190:100,90:100:3537:90:3157:-227.159,0,-260.917	0/1:30:19,11:19:671:11:392:-26.5892,0,-51.6849	0/1:265:122,143:122:4307:143:5039:-373.889,0,-307.523	0/1:89:42,47:42:1487:47:1648:-121.813,0,-107.332	0/1:155:77,78:77:2756:78:2765:-202.432,0,-201.622	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	1/1:176:0,176:0:0:176:6101:-549.201,-52.9813,0	0/1:155:83,72:83:2956:72:2533:-181.562,0,-219.615	0/1:67:33,34:33:1176:34:1208:-88.8571,0,-85.9788	.:.:.:.:.:.:.:.	0/1:133:66,67:66:2342:67:2355:-172.168,0,-171.002	0/1:29:20,9:20:716:9:309:-19.4108,0,-56.0378	0/1:119:56,62:56:1980:62:2183:-160.855,0,-142.594	0/1:85:47,38:47:1680:38:1343:-95.5818,0,-125.9	1/1:77:0,77:0:0:77:2704:-243.604,-23.1793,0	1/1:71:0,71:0:0:71:2455:-221.203,-21.3731,0	0/1:93:40,53:40:1412:53:1876:-141.123,0,-99.3815	1/1:176:3,173:3:108:173:6092:-537.944,-42.9061,0	0/1:102:48,54:48:1650:54:1872:-138.051,0,-118.078	0/1:166:90,76:90:3179:76:2644:-188.236,0,-236.349	1/1:98:0,98:0:0:98:3414:-307.476,-29.5009,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:83:0,83:0:0:83:2936:-264.476,-24.9855,0	1/1:36:1,35:1:36:35:1237:-108.034,-7.23881,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:86:0,86:0:0:86:2996:-269.872,-25.8886,0	1/1:31:0,31:0:0:31:1061:-95.7907,-9.33193,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:9:0,9:0:0:9:312:-28.4154,-2.70927,0	0/1:67:28,39:28:1000:39:1375:-103.879,0,-70.1464	1/1:109:0,109:0:0:109:3762:-338.78,-32.8123,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:232:103,129:103:3661:129:4508:-336.053,0,-259.854	1/1:119:0,119:0:0:119:4168:-375.277,-35.8226,0	0/1:50:25,25:25:888:25:875:-64.0146,0,-65.1875	0/1:83:33,50:33:1168:50:1743:-132.165,0,-80.4417	1/1:99:1,98:1:36:98:3440:-306.218,-26.2037,0	0/1:26:16,10:16:568:10:356:-24.5545,0,-43.6251	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:92:0,92:0:0:92:3213:-289.393,-27.6948,0	0/1:17:9,8:9:320:8:280:-20.4218,0,-24.0248	1/1:107:0,107:0:0:107:3796:-341.842,-32.2102,0	0/1:65:33,32:33:1176:32:1132:-82.6216,0,-86.5808	1/1:161:0,161:0:0:161:5653:-508.89,-48.4658,0	0/1:171:86,85:86:3031:85:2992:-218.037,0,-221.544	0/1:122:70,52:70:2488:52:1860:-130.954,0,-187.448	1/1:117:2,115:2:72:115:4088:-361.272,-28.3838,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:95:0,95:0:0:95:3307:-297.85,-28.5979,0	1/1:143:0,143:0:0:143:5096:-458.786,-43.0473,0	1/1:126:0,126:0:0:126:4435:-399.323,-37.9298,0	0/1:81:42,39:42:1470:39:1359:-98.2213,0,-108.21	1/1:61:0,61:0:0:61:2113:-190.435,-18.3628,0	0/1:75:37,38:37:1316:38:1360:-100.123,0,-96.1646	0/1:138:65,73:65:2287:73:2577:-190.637,0,-164.547	0/1:40:24,16:24:860:16:572:-39.7722,0,-65.6806	0/1:71:42,29:42:1480:29:1020:-70.739,0,-112.117	0/1:57:29,28:29:1020:28:1004:-73.5172,0,-74.9534	0/1:46:21,25:21:747:25:876:-65.3097,0,-53.7069	0/1:93:49,44:49:1744:44:1550:-111.784,0,-129.249	0/1:61:44,17:44:1525:17:595:-35.5139,0,-119.177	1/1:110:0,110:0:0:110:3885:-349.79,-33.1133,0	1/1:91:0,91:0:0:91:3179:-286.334,-27.3937,0
chr06	31310682	.	G	A	54796.8	PASS	AB=0.50502;ABP=4.40571;AC=49;AF=0.263441;AN=186;AO=3231;CIGAR=1X;DP=12738;DPB=12738;DPRA=1.73949;EPP=7019.04;EPPR=20634.2;GTI=0;LEN=1;MEANALT=1.08772;MQM=59.9647;MQMR=59.9877;NS=93;NUMALT=1;ODDS=9.94405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115622;QR=340093;RO=9501;RPL=3231;RPP=7019.04;RPPR=20634.2;RPR=0;RUN=1;SAF=0;SAP=7019.04;SAR=3231;SRF=0;SRP=20634.2;SRR=9501;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:23,16:23:824:16:576:-40.4348,0,-62.7431	0/1:58:24,34:24:864:34:1212:-91.926,0,-60.6228	0/1:75:46,29:46:1644:29:1028:-70.2558,0,-125.671	0/0:93:93,0:93:3313:0:0:0,-27.9958,-298.388	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	.:.:.:.:.:.:.:.	0/0:35:34,1:34:1220:1:36:0,-6.93777,-106.509	0/1:90:32,58:32:1152:58:2061:-158.597,0,-76.8974	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/1:34:17,17:17:604:17:612:-45.1784,0,-44.4556	0/1:239:111,128:111:3975:128:4551:-337.81,0,-285.994	0/0:58:58,0:58:2079:0:0:0,-17.4597,-187.38	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/1:40:18,22:18:644:22:792:-59.5645,0,-46.2494	0/1:51:35,16:35:1260:16:572:-36.4609,0,-98.353	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/0:16:15,0:15:540:0:0:0,-4.51545,-48.5767	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:129:72,57:72:2584:57:2043:-145.308,0,-193.976	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.571	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.146	0/1:66:33,33:33:1176:33:1184:-87.0003,0,-86.2798	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/1:36:10,26:10:356:26:932:-73.3618,0,-21.5442	0/1:132:61,71:61:2184:71:2521:-187.406,0,-157.089	0/1:128:64,64:64:2300:64:2296:-168.369,0,-168.729	0/1:18:6,12:6:212:12:428:-33.4403,0,-14.0063	0/1:118:65,53:65:2332:53:1888:-134.658,0,-174.618	0/1:70:42,28:42:1496:28:1008:-69.9643,0,-113.862	0/1:62:33,29:33:1184:29:1040:-75.2505,0,-88.2045	0/1:364:186,178:186:6649:178:6376:-464.354,0,-488.913	0/1:679:337,342:337:12077:342:12235:-896.222,0,-882.271	0/0:540:539,1:539:19299:1:32:0,-159.357,-1733.25	0/0:961:957,3:957:34243:3:108:0,-279.273,-3070.7	0/0:715:712,2:712:25488:2:72:0,-208.459,-2286.37	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.219	0/1:87:45,42:45:1593:42:1508:-109.825,0,-117.469	0/1:258:133,125:133:4772:125:4480:-325.703,0,-351.97	0/1:333:159,174:159:5696:174:6244:-461.754,0,-412.515	0/1:56:35,21:35:1233:21:756:-51.5095,0,-94.4144	0/1:149:73,76:73:2595:76:2730:-201.089,0,-188.945	0/1:78:43,34:43:1544:34:1220:-86.5677,0,-115.714	0/1:24:16,8:16:576:8:284:-18.6786,0,-44.9503	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/1:85:46,39:46:1648:39:1385:-99.3593,0,-123.021	0/0:88:86,1:86:3092:1:36:0,-22.9512,-274.909	0/1:73:24,49:24:849:49:1756:-136.349,0,-54.7526	0/1:52:19,33:19:680:33:1184:-91.2148,0,-45.8756	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:442:169,273:169:6072:273:9792:-748.165,0,-413.417	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:327:325,2:325:11618:2:72:0,-91.6001,-1038.64	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.387	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:394:394,0:394:14090:0:0:0,-118.606,-1267.86	0/0:362:362,0:362:12956:0:0:0,-108.973,-1165.85	0/1:40:21,19:21:756:19:680:-49.488,0,-56.326	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:262:139,122:139:4992:122:4349:-312.657,0,-370.005	0/1:35:19,16:19:684:16:576:-41.6389,0,-51.3543	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:54:30,24:30:1080:24:864:-61.8269,0,-81.2576	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:97:33,64:33:1180:64:2300:-178.061,0,-77.3081	0/0:252:251,1:251:8999:1:36:0,-72.2613,-806.288	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:386:182,204:182:6505:204:7293:-540.225,0,-469.336	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.78	0/1:71:36,35:36:1288:35:1256:-91.9722,0,-94.8505	0/0:103:103,0:103:3679:0:0:0,-31.0061,-331.313	0/1:86:52,34:52:1872:34:1216:-83.858,0,-142.871	0/1:56:31,25:31:1100:25:896:-64.1027,0,-82.4526	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:670:670,0:670:23984:0:0:0,-201.69,-2157.9	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.772	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:39:20,19:20:720:19:662:-48.1061,0,-53.3886	0/0:53:52,1:52:1872:1:36:0,-12.3563,-165.161	0/1:32:16,16:16:572:16:572:-42.1805,0,-42.1805	0/1:80:47,33:47:1688:33:1188:-83.1462,0,-128.125	0/1:20:10,10:10:360:10:352:-25.9976,0,-26.7237	0/1:47:25,22:25:891:22:784:-56.7355,0,-66.3604	0/1:53:22,31:22:792:31:1108:-84.0764,0,-55.6511	0/1:286:150,136:150:5375:136:4870:-352.357,0,-397.786	0/1:603:318,285:318:11380:285:10202:-736.582,0,-842.559	0/1:44:19,25:19:676:25:900:-68.0757,0,-47.9227	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684
chr06	31320790	.	C	T	17479.9	PASS	AB=0.505174;ABP=3.50465;AC=53;AF=0.284946;AN=186;AO=1085;CIGAR=1X;DP=4214;DPB=4214;DPRA=0.915649;EPP=2359.06;EPPR=6795.38;GTI=2;LEN=1;MEANALT=1;MQM=59.8479;MQMR=59.8597;NS=93;NUMALT=1;ODDS=2.53641;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38319;QR=110228;RO=3128;RPL=0;RPP=2359.06;RPPR=6795.38;RPR=1085;RUN=1;SAF=0;SAP=2359.06;SAR=1085;SRF=0;SRP=6795.38;SRR=3128;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:12,24:12:420:24:848:-65.8017,0,-27.296	0/1:14:8,6:8:284:6:203:-14.3868,0,-21.688	0/1:49:28,21:28:971:21:740:-52.172,0,-72.9499	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.772	0/0:26:26,0:26:892:0:0:0,-7.82678,-80.5899	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:46:46,0:46:1605:0:0:0,-13.8474,-144.68	0/1:71:35,36:35:1240:36:1261:-92.4134,0,-90.5313	0/0:43:43,0:43:1511:0:0:0,-12.9443,-136.282	0/1:38:19,19:19:672:19:653:-47.6501,0,-49.3677	0/1:28:16,12:16:572:12:424:-30.0676,0,-43.3708	0/0:69:69,0:69:2411:0:0:0,-20.7711,-217.235	0/0:47:47,0:47:1659:0:0:0,-14.1484,-149.587	0/1:32:17,15:17:591:15:515:-37.042,0,-43.8823	0/1:38:18,20:18:612:20:704:-52.2454,0,-43.9584	0/0:58:58,0:58:2026:0:0:0,-17.4597,-182.609	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:21:9,12:9:320:12:423:-32.0825,0,-22.8207	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.395	0/0:37:37,0:37:1306:0:0:0,-11.1381,-117.84	0/0:48:48,0:48:1693:0:0:0,-14.4494,-152.654	0/1:71:30,41:30:1076:41:1447:-109.152,0,-75.7797	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/1:30:17,13:17:585:13:456:-32.3423,0,-42.5716	0/1:122:68,54:68:2397:54:1931:-137.34,0,-179.252	0/1:109:45,64:45:1586:64:2267:-171.479,0,-110.212	0/1:20:13,7:13:460:7:252:-17.0084,0,-35.7148	0/1:74:41,33:41:1472:33:1168:-83.151,0,-110.5	0/1:59:20,39:20:687:39:1396:-108.178,0,-44.3857	0/1:59:26,33:26:924:33:1160:-86.9459,0,-65.7169	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:139:139,0:139:4864:0:0:0,-41.8432,-437.921	0/1:55:34,21:34:1200:21:748:-51.0886,0,-91.7302	0/1:35:18,17:18:644:17:596:-43.4317,0,-47.7536	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:53:29,24:29:1035:24:851:-60.9555,0,-77.5076	0/1:14:7,7:7:243:7:252:-18.8145,0,-17.9861	0/1:93:59,34:59:2091:34:1200:-80.2814,0,-160.46	0/1:34:15,19:15:523:19:667:-50.1196,0,-37.1634	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.939	0/0:51:51,0:51:1797:0:0:0,-15.3525,-162.01	0/1:67:37,30:37:1328:30:1041:-73.8284,0,-99.6532	0/0:95:95,0:95:3360:0:0:0,-28.5978,-302.454	0/1:55:20,35:20:703:35:1227:-93.8056,0,-47.0369	0/1:20:7,13:7:244:13:468:-36.439,0,-16.2788	0/0:101:101,0:101:3565:0:0:0,-30.404,-320.788	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:58:57,0:57:2000:0:0:0,-17.1587,-179.909	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1124	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.056	0/0:17:17,0:17:592:0:0:0,-5.11751,-53.6064	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:50:22,28:22:784:28:988:-74.1824,0,-55.8324	0/0:60:60,0:60:2085:0:0:0,-18.0618,-187.917	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:56:42,14:42:1479:14:496:-28.1166,0,-116.546	0/0:63:63,0:63:2218:0:0:0,-18.9649,-199.884	0/1:22:15,7:15:536:7:248:-16.0415,0,-41.9522	0/1:46:27,19:27:938:19:680:-47.4535,0,-70.8844	0/0:72:70,2:70:2463:2:72:0,-14.8374,-215.072	0/1:82:37,45:37:1296:45:1598:-119.41,0,-92.2515	0/0:26:26,0:26:919:0:0:0,-7.82678,-82.2462	0/0:28:27,1:27:960:1:36:0,-4.83056,-83.118	0/0:38:38,0:38:1320:0:0:0,-11.4391,-119.097	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:77:77,0:77:2722:0:0:0,-23.1793,-245.221	0/1:34:18,16:18:631:16:576:-41.94,0,-46.8803	0/0:77:76,1:76:2672:1:36:0,-19.581,-237.115	0/1:40:23,17:23:816:17:608:-43.0108,0,-61.7205	0/1:103:45,58:45:1604:58:2039:-152.666,0,-113.643	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.29	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:56:56,0:56:1950:0:0:0,-16.8577,-175.772	0/0:60:60,0:60:2126:0:0:0,-18.0618,-190.979	0/0:100:100,0:100:3544:0:0:0,-30.103,-319.162	0/1:53:21,32:21:744:32:1139:-86.8354,0,-51.3297	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.575	0/1:23:13,10:13:446:10:348:-24.7314,0,-33.5427	0/1:80:39,41:39:1389:41:1443:-106.083,0,-101.225	0/1:18:8,10:8:275:10:356:-26.9593,0,-19.6649	0/1:47:20,27:20:689:27:963:-72.8354,0,-48.1768	0/1:37:18,19:18:620:19:664:-48.9382,0,-44.9802	0/1:20:11,9:11:388:9:308:-22.0313,0,-29.2368	0/1:52:16,36:16:554:36:1268:-98.7676,0,-34.5313	0/1:48:18,30:18:629:30:1055:-80.8106,0,-42.4843	0/0:60:60,0:60:2120:0:0:0,-18.0618,-191.069	0/0:66:66,0:66:2296:0:0:0,-19.868,-206.898
chr06	31320810	.	A	C	65297.2	PASS	AB=0.496523;ABP=3.23681;AC=132;AF=0.709677;AN=186;AO=3150;CIGAR=1X;DP=4255;DPB=4255;DPRA=14.15;EPP=6843.15;EPPR=2385.12;GTI=3;LEN=1;MEANALT=1.04444;MQM=59.846;MQMR=59.8974;NS=93;NUMALT=1;ODDS=2.53674;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112258;QR=39246;RO=1101;RPL=0;RPP=6843.15;RPPR=2385.12;RPR=3150;RUN=1;SAF=0;SAP=6843.15;SAR=3150;SRF=0;SRP=2393.8;SRR=1101;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:25,12:25:896:12:432:-28.0831,0,-69.8213	0/1:15:6,9:6:212:9:324:-24.9895,0,-14.9093	0/1:50:21,29:21:747:29:1029:-77.8686,0,-52.5028	1/1:73:0,73:0:0:73:2611:-235.208,-21.9752,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	1/1:48:0,48:0:0:48:1716:-154.668,-14.4494,0	0/1:73:37,36:37:1315:36:1292:-94.5388,0,-96.6637	1/1:42:0,42:0:0:42:1481:-133.582,-12.6433,0	0/1:38:19,19:19:684:19:684:-50.4512,0,-50.4512	0/1:27:12,15:12:428:15:536:-40.4414,0,-30.731	1/1:71:0,71:0:0:71:2500:-225.24,-21.3731,0	1/1:46:0,46:0:0:46:1656:-149.326,-13.8474,0	0/1:31:14,17:14:496:17:604:-45.3541,0,-35.6423	0/1:38:20,18:20:716:18:648:-47.2127,0,-53.3286	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:21:1,20:1:36:20:698:-59.5418,-2.72336,0	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:73:42,31:42:1508:31:1101:-77.4232,0,-114.039	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:31:14,17:14:500:17:599:-44.533,0,-36.0042	0/1:125:53,71:53:1896:71:2515:-188.912,0,-133.231	0/1:110:65,45:65:2305:45:1608:-111.897,0,-174.596	0/1:22:9,13:9:315:13:468:-35.837,0,-22.0646	0/1:74:33,41:33:1179:41:1472:-110.5,0,-84.141	0/1:60:40,20:40:1440:20:720:-47.067,0,-111.836	0/1:62:33,29:33:1167:29:1028:-74.1669,0,-86.6725	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:144:0,144:0:0:144:5151:-463.731,-43.3483,0	0/1:56:21,35:21:731:35:1241:-95.0895,0,-49.2528	0/1:36:17,19:17:593:19:671:-49.8777,0,-42.8576	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:53:24,29:24:860:29:1036:-77.5984,0,-61.7672	0/1:15:7,8:7:252:8:284:-21.3761,0,-18.5135	0/1:93:33,60:33:1176:60:2137:-164.598,0,-78.152	0/1:34:19,15:19:668:15:540:-38.7015,0,-50.2106	1/1:31:0,31:0:0:31:1073:-96.8728,-9.33193,0	1/1:53:0,53:0:0:53:1887:-170.108,-15.9546,0	0/1:68:31,37:31:1112:37:1332:-99.7123,0,-79.9213	1/1:94:0,94:0:0:94:3356:-302.091,-28.2968,0	0/1:57:35,22:35:1247:22:760:-51.5572,0,-95.0046	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	1/1:102:0,102:0:0:102:3636:-327.428,-30.7051,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:59:0,59:0:0:59:2103:-189.526,-17.7608,0	1/1:26:0,26:0:0:26:932:-84.1942,-7.82678,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:78:0,78:0:0:78:2745:-246.662,-23.4803,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:49:27,22:27:972:22:792:-56.8552,0,-73.0474	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:50:13,37:13:468:37:1305:-102.698,0,-27.4081	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:23:7,16:7:244:16:572:-44.8897,0,-15.3757	0/1:45:20,25:20:716:25:869:-64.9775,0,-51.2214	1/1:75:2,73:2:68:73:2608:-228.496,-16.1195,0	0/1:83:45,38:45:1616:38:1356:-97.3526,0,-120.74	1/1:26:0,26:0:0:26:917:-82.6862,-7.82678,0	1/1:28:1,27:1:36:27:964:-83.4785,-4.83057,0	1/1:39:0,39:0:0:39:1377:-124.227,-11.7402,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:75:0,75:0:0:75:2681:-241.53,-22.5773,0	0/1:35:17,18:17:604:18:644:-47.7536,0,-44.1546	1/1:73:1,72:1:36:72:2544:-225.583,-18.3769,0	0/1:40:17,23:17:608:23:824:-62.4421,0,-43.0108	0/1:104:59,45:59:2120:45:1603:-113.252,0,-159.646	1/1:37:1,36:1:36:36:1292:-112.981,-7.53984,0	0/1:5:1,4:1:36:4:144:-11.8075,0,-2.09312	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:61:0,61:0:0:61:2173:-195.833,-18.3628,0	1/1:101:0,101:0:0:101:3610:-325.081,-30.404,0	0/1:55:33,22:33:1180:22:773:-53.3328,0,-89.923	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:21:9,12:9:324:12:424:-32.1748,0,-23.1842	0/1:81:41,40:41:1463:40:1440:-105.514,0,-107.582	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2598	0/1:49:29,20:29:1017:20:705:-49.0132,0,-77.0877	0/1:38:20,18:20:701:18:629:-45.4945,0,-51.9726	0/1:20:9,11:9:309:11:392:-29.5995,0,-22.1201	0/1:55:36,18:36:1288:18:644:-41.6753,0,-99.6067	0/1:50:30,20:30:1080:20:704:-48.633,0,-82.4618	1/1:61:0,60:0:0:60:2137:-192.276,-18.0618,0	1/1:66:1,64:1:21:64:2279:-203.197,-17.7519,0
chr06	31338233	.	C	T	377184	PASS	AB=0.502199;ABP=3.41148;AC=138;AF=0.734043;AN=188;AO=13951;CIGAR=1X;DP=18723;DPB=18723;DPRA=0;EPP=29589.2;EPPR=10093.4;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9925;MQMR=59.9845;NS=94;NUMALT=1;ODDS=7.14864;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=497046;QR=168945;RO=4770;RPL=6424;RPP=192.375;RPPR=109.652;RPR=7527;RUN=1;SAF=6502;SAP=142.599;SAR=7449;SRF=2172;SRP=85.6246;SRR=2598;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:41,40:41:1427:40:1425:-104.162,0,-104.339	0/1:275:138,137:138:4869:137:4886:-357.107,0,-355.581	0/1:228:136,92:136:4818:92:3260:-224.986,0,-365.142	1/1:471:2,469:2:72:469:16794:-1504.27,-134.948,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:283:1,282:1:36:282:10068:-902.458,-81.5932,0	0/1:392:210,182:210:7479:182:6482:-465.465,0,-554.13	1/1:263:0,263:0:0:263:9332:-839.85,-79.1709,0	0/1:272:144,128:144:5093:128:4575:-330.035,0,-376.629	0/1:135:66,69:66:2287:69:2453:-180.385,0,-165.449	1/1:233:0,233:0:0:233:8259:-743.327,-70.14,0	1/1:191:1,190:1:36:190:6807:-609.102,-53.8985,0	0/1:170:73,97:73:2568:97:3462:-260.617,0,-179.638	0/1:195:104,91:104:3672:91:3256:-234.56,0,-271.982	1/1:166:1,165:1:36:165:5869:-524.722,-46.3727,0	1/1:169:0,169:0:0:169:6005:-540.559,-50.8741,0	1/1:162:0,162:0:0:162:5778:-520.135,-48.7669,0	0/1:86:30,56:30:1048:56:1987:-153.215,0,-68.7388	1/1:386:1,385:1:36:385:13702:-1229.32,-112.599,0	1/1:231:1,230:1:36:230:8161:-730.888,-65.9397,0	1/1:91:0,91:0:0:91:3250:-292.72,-27.3937,0	0/1:158:74,84:74:2638:84:2981:-220.958,0,-190.103	1/1:206:0,206:0:0:206:7324:-659.213,-62.0122,0	0/1:143:80,63:80:2823:63:2235:-158.366,0,-211.261	0/1:547:245,302:245:8691:302:10729:-800.857,0,-617.525	0/1:438:203,235:203:7230:235:8361:-620.648,0,-518.904	0/1:68:34,34:34:1216:34:1224:-89.997,0,-89.2765	0/1:506:250,256:250:8896:256:9140:-670.254,0,-648.305	0/1:203:109,94:109:3883:94:3368:-242.227,0,-288.557	0/1:263:123,140:123:4324:140:5008:-371.697,0,-310.166	0/1:13:8,5:8:279:5:180:-12.6387,0,-21.5341	0/1:29:12,17:12:432:17:604:-45.9607,0,-30.4913	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:20:2,18:2:72:18:644:-52.27,0,-0.816122	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:474:1,473:1:36:473:16892:-1516.32,-139.09,0	0/1:214:99,115:99:3523:115:4088:-303.687,0,-252.86	0/1:147:78,69:78:2772:69:2465:-177.853,0,-205.468	0/1:4:3,1:3:99:1:32:-1.99519,0,-8.03246	0/1:272:130,142:130:4577:142:5078:-375.284,0,-330.216	0/1:73:36,37:36:1280:37:1320:-97.1268,0,-93.528	0/1:263:124,138:124:4411:138:4905:-362.414,0,-317.972	0/1:178:80,98:80:2841:98:3520:-263.425,0,-202.345	1/1:175:0,175:0:0:175:6247:-562.325,-52.6803,0	1/1:180:0,180:0:0:180:6377:-574.02,-54.1854,0	0/1:196:69,127:69:2460:127:4498:-345.987,0,-162.653	1/1:328:2,326:2:72:326:11626:-1039.37,-91.9011,0	0/1:258:142,116:142:5009:116:4139:-295.026,0,-373.293	0/1:276:123,153:123:4367:153:5424:-405.207,0,-310.12	1/1:364:0,364:0:0:364:12892:-1160.1,-109.575,0	0/1:42:16,26:16:559:26:932:-71.5556,0,-37.9943	1/1:208:0,208:0:0:208:7401:-666.137,-62.6142,0	1/1:110:0,110:0:0:110:3894:-350.654,-33.1133,0	1/1:38:0,38:0:0:38:1357:-122.429,-11.4391,0	1/1:220:0,220:0:0:220:7833:-704.998,-66.2266,0	1/1:107:1,106:1:36:106:3754:-334.461,-28.6119,0	1/1:31:1,30:1:36:30:1072:-93.1942,-5.73366,0	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:180:97,83:97:3464:83:2961:-212.538,0,-257.787	1/1:252:2,250:2:63:250:8925:-797.251,-69.8764,0	0/1:13:5,8:5:180:8:280:-21.6259,0,-12.6387	0/1:317:142,174:142:5024:174:6177:-460.546,0,-356.823	1/1:375:1,374:1:36:374:13357:-1198.33,-109.288,0	0/1:178:79,99:79:2803:99:3520:-263.425,0,-198.925	0/1:176:80,96:80:2835:96:3386:-251.972,0,-202.406	1/1:265:2,263:2:72:263:9419:-840.834,-72.9362,0	0/1:181:118,63:118:4173:63:2247:-148.006,0,-321.264	1/1:91:0,91:0:0:91:3251:-292.811,-27.3937,0	1/1:107:0,107:0:0:107:3813:-343.367,-32.2102,0	1/1:184:0,184:0:0:184:6526:-587.426,-55.3895,0	0/1:64:41,23:41:1464:23:804:-53.4106,0,-112.79	1/1:246:0,246:0:0:246:8774:-789.653,-74.0534,0	0/1:187:104,83:104:3663:83:2942:-208.72,0,-273.583	1/1:361:0,361:0:0:361:12866:-1157.76,-108.672,0	0/1:354:194,160:194:6890:160:5713:-407.723,0,-513.604	0/1:96:45,51:45:1608:51:1821:-135.271,0,-116.111	1/1:329:2,327:2:72:327:11678:-1044.05,-92.2021,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:279:0,279:0:0:279:9954:-895.802,-83.9874,0	1/1:191:0,191:0:0:191:6811:-613.064,-57.4967,0	1/1:486:0,486:0:0:486:17283:-1555.11,-146.301,0	0/1:177:90,87:90:3176:87:3115:-227.294,0,-232.783	1/1:204:0,204:0:0:204:7292:-656.33,-61.4101,0	0/1:200:114,86:114:4016:86:3065:-215.872,0,-301.419	0/1:341:176,165:176:6222:165:5924:-430.615,0,-457.431	0/1:72:25,47:25:883:47:1664:-128.371,0,-58.1133	0/1:162:79,83:79:2832:83:2955:-217.417,0,-206.352	0/1:153:79,74:79:2755:74:2656:-193.038,0,-202.133	0/1:127:78,49:78:2722:49:1737:-118.382,0,-206.99	0/1:208:90,118:90:3175:118:4159:-311.881,0,-223.36	0/1:217:133,84:133:4742:84:3011:-205.897,0,-361.616	1/1:195:0,195:0:0:195:6953:-625.835,-58.7009,0	1/1:280:0,280:0:0:280:9953:-895.714,-84.2884,0
chr06	31387334	.	A	T	31249.4	PASS	AB=0.460775;ABP=59.5671;AC=45;AF=0.239362;AN=188;AO=1964;CIGAR=1X;DP=8951;DPB=8951;DPRA=1.2758;EPP=4267.78;EPPR=15172.9;GTI=1;LEN=1;MEANALT=1;MQM=49.6706;MQMR=50.3958;NS=94;NUMALT=1;ODDS=1.35236;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70335;QR=248257;RO=6986;RPL=0;RPP=4267.78;RPPR=15172.9;RPR=1964;RUN=1;SAF=1964;SAP=4267.78;SAR=0;SRF=6986;SRP=15172.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:25,41:25:892:41:1466:-108.218,0,-58.6633	0/1:85:42,43:42:1481:43:1540:-109.721,0,-101.338	0/1:223:118,105:118:4189:105:3756:-260.793,0,-300.827	0/0:177:176,0:176:6228:0:0:0,-52.9813,-556.947	0/0:66:65,1:65:2289:1:36:0,-16.2788,-201.449	0/0:47:47,0:47:1684:0:0:0,-14.1484,-147.864	0/0:45:45,0:45:1604:0:0:0,-13.5463,-143.945	0/1:147:80,67:80:2849:67:2396:-165.419,0,-204.677	0/0:123:122,1:122:4326:1:36:0,-33.5057,-373.196	0/1:65:34,31:34:1220:31:1112:-80.5636,0,-89.835	0/1:74:43,31:43:1544:31:1116:-78.3148,0,-116.095	0/0:89:89,0:89:3157:0:0:0,-26.7917,-274.46	0/0:71:71,0:71:2540:0:0:0,-21.3731,-222.245	0/1:74:35,39:35:1256:39:1400:-103.645,0,-90.4749	0/1:69:35,34:35:1248:34:1216:-88.7841,0,-91.4263	0/0:69:69,0:69:2468:0:0:0,-20.7711,-220.146	0/0:30:30,0:30:1080:0:0:0,-9.0309,-95.0982	0/0:33:33,0:33:1169:0:0:0,-9.93399,-102.568	0/1:30:15,15:15:540:15:540:-38.8382,0,-38.8382	0/0:211:211,0:211:7529:0:0:0,-63.5173,-675.307	0/0:186:186,0:186:6563:0:0:0,-55.9916,-588.299	0/0:128:128,0:128:4512:0:0:0,-38.5318,-404.832	0/1:79:44,35:44:1561:35:1256:-89.3898,0,-116.76	0/0:41:41,0:41:1464:0:0:0,-12.3422,-131.182	0/1:117:75,42:75:2628:42:1500:-99.754,0,-199.736	0/0:334:332,2:332:11854:2:72:0,-93.7122,-1057.74	0/1:289:154,135:154:5442:135:4833:-345.725,0,-400.406	0/1:37:19,18:19:680:18:644:-46.8273,0,-50.1525	0/1:277:176,101:176:6269:101:3628:-242.136,0,-479.652	0/1:134:82,52:82:2906:52:1864:-126.652,0,-220.144	0/1:86:54,32:54:1924:32:1140:-76.8263,0,-146.872	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/1:15:9,6:9:324:6:216:-15.2253,0,-24.9162	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.51118	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.7966	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.6145	0/0:153:153,0:153:5472:0:0:0,-46.0576,-491.647	0/1:140:87,53:87:3100:53:1890:-127.348,0,-234.278	0/1:52:20,32:20:716:32:1152:-85.3996,0,-47.7031	0/1:8:7,1:7:248:1:36:-1.18099,0,-20.203	0/1:98:77,21:77:2733:21:748:-37.7998,0,-215.133	0/1:30:14,16:14:504:16:576:-42.7065,0,-36.1865	0/1:121:69,52:69:2414:52:1872:-131.728,0,-179.885	0/1:59:23,36:23:820:36:1296:-98.8921,0,-56.2612	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173	0/0:113:113,0:113:4001:0:0:0,-34.0164,-359.737	0/1:169:82,87:82:2902:87:3116:-223.521,0,-204.38	0/0:195:195,0:195:6878:0:0:0,-58.7008,-617.281	0/1:96:59,37:59:2097:37:1319:-89.8768,0,-159.7	0/1:108:50,58:50:1792:58:2072:-153.361,0,-127.916	0/0:143:143,0:143:5080:0:0:0,-43.0473,-456.221	0/1:6:4,2:4:144:2:72:-5.02085,0,-11.2766	0/0:164:164,0:164:5799:0:0:0,-49.3689,-508.574	0/0:91:91,0:91:3244:0:0:0,-27.3937,-291.551	0/0:10:10,0:10:360:0:0:0,-3.0103,-31.58	0/0:220:220,0:220:7817:0:0:0,-66.2266,-700.12	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.3667	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4267	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.3495	0/1:94:38,56:38:1364:56:1989:-149.787,0,-93.9031	0/0:96:96,0:96:3448:0:0:0,-28.8989,-309.253	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9285	0/1:178:96,82:96:3401:82:2932:-210.221,0,-252.203	0/0:173:171,2:171:6100:2:72:0,-45.2512,-539.511	0/1:72:46,26:46:1629:26:920:-61.1945,0,-124.649	0/1:66:44,22:44:1560:22:784:-50.9185,0,-119.774	0/0:150:148,2:148:5281:2:72:0,-38.3275,-467.474	0/0:256:254,2:254:9021:2:72:0,-70.2366,-799.636	0/0:42:40,2:40:1432:2:72:0,-5.82373,-121.113	0/0:23:23,0:23:805:0:0:0,-6.92369,-71.1995	0/0:53:53,0:53:1904:0:0:0,-15.9546,-170.912	0/1:28:10,18:10:360:18:644:-49.4861,0,-24.2284	0/0:123:123,0:123:4338:0:0:0,-37.0267,-375.343	0/1:74:38,36:38:1352:36:1296:-92.0474,0,-96.985	0/0:86:86,0:86:3072:0:0:0,-25.8886,-274.171	0/1:204:91,113:91:3225:113:4048:-302.087,0,-228.3	0/1:166:87,79:87:3078:79:2836:-199.271,0,-218.313	0/0:122:121,1:121:4286:1:36:0,-33.2046,-373.985	0/0:18:18,0:18:644:0:0:0,-5.41854,-56.7218	0/0:126:126,0:126:4454:0:0:0,-37.9298,-398.885	0/0:165:164,1:164:5781:1:36:0,-46.1489,-500.457	0/0:120:120,0:120:4261:0:0:0,-36.1236,-382.776	0/1:40:20,20:20:720:20:716:-52.6355,0,-52.859	0/0:82:82,0:82:2925:0:0:0,-24.6845,-262.761	0/1:44:17,27:17:608:27:968:-73.7506,0,-41.5773	0/1:130:71,59:71:2528:59:2120:-150.334,0,-188.103	0/1:29:19,10:19:684:10:360:-23.3113,0,-51.3902	0/1:63:35,28:35:1248:28:1008:-69.3271,0,-90.6723	0/1:78:38,40:38:1348:40:1427:-102.036,0,-93.7196	0/1:57:28,29:28:1004:29:1040:-76.3414,0,-73.1951	0/1:100:48,52:48:1724:52:1864:-136.766,0,-123.412	0/1:55:24,31:24:856:31:1107:-83.2423,0,-60.5622	0/0:136:136,0:136:4822:0:0:0,-40.9401,-431.279	0/0:86:86,0:86:3065:0:0:0,-25.8886,-275.099
chr06	31387346	.	GTGAA	ATGAG,ATGAA	190188	PASS	AB=0.536899,0.458197;ABP=53.6489,68.0044;AC=143,45;AF=0.760638,0.239362;AN=188;AO=7029,1977;CIGAR=1X3M1X,1X4M;DP=9051;DPB=9051;DPRA=0,1.30282;EPP=15222.9,4296.01;EPPR=5.18177;GTI=1;LEN=5,1;MEANALT=1.97872,2.47273;MQM=50.4432,49.7248;MQMR=58;NS=94;NUMALT=2;ODDS=1.33065;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=249002,70666;QR=36;RO=1;RPL=5,0;RPP=15222.9,4296.01;RPPR=5.18177;RPR=7024,1977;RUN=1,1;SAF=7029,1977;SAP=15266.3,4296.01;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:66:0,25,41:0:0:25,41:890,1449:-185.511,-114.999,-107.473,-70.8579,0,-58.5156	1/2:84:0,41,43:0:0:41,43:1445,1527:-233.533,-121.536,-109.193,-112.339,0,-99.395	1/2:226:0,122,104:0:0:122,104:4340,3689:-635.715,-291.859,-255.133,-344.201,0,-312.894	1/1:179:0,178,0:0:0:178,0:6343,0:-567.637,-53.5833,0,-567.637,-53.5833,-567.637	1/1:67:0,66,1:0:0:66,1:2348,36:-210.146,-19.868,0,-207.217,-16.5798,-206.916	1/1:47:0,46,0:0:0:46,0:1633,0:-143.765,-13.8474,0,-143.765,-13.8474,-143.765	1/1:47:0,47,0:0:0:47,0:1665,0:-149.518,-14.1484,0,-149.518,-14.1484,-149.518	1/2:148:0,80,67:0:0:80,67:2804,2378:-409.486,-188.396,-164.314,-221.192,0,-201.023	1/1:125:0,123,1:0:0:123,1:4358,36:-379.935,-37.0267,0,-377.067,-34.1279,-376.766	1/2:66:0,32,31:0:0:32,31:1137,1112:-182.773,-90.4539,-80.8209,-92.3327,0,-83.0008	1/2:74:0,43,31:0:0:43,31:1532,1116:-215.541,-91.2591,-78.3148,-124.64,0,-115.308	1/1:89:0,89,0:0:0:89,0:3139,0:-273.406,-26.7917,0,-273.406,-26.7917,-273.406	1/1:71:0,71,0:0:0:71,0:2528,0:-221.501,-21.3731,0,-221.501,-21.3731,-221.501	1/2:74:0,35,39:0:0:35,39:1254,1400:-215.886,-114.181,-103.645,-102.062,0,-90.3221	1/2:70:0,35,35:0:0:35,35:1247,1256:-203.841,-102.61,-92.0744,-101.587,0,-91.0513	1/1:70:0,70,0:0:0:70,0:2496,0:-222.446,-21.0721,0,-222.446,-21.0721,-222.446	1/1:30:0,29,0:0:0:29,0:1039,0:-91.254,-8.72987,0,-91.254,-8.72987,-91.254	1/1:33:0,33,0:0:0:33,0:1182,0:-103.693,-9.93399,0,-103.693,-9.93399,-103.693	1/2:31:0,15,16:0:0:15,16:526,572:-87.7478,-45.9006,-41.3851,-42.1937,0,-37.3773	1/1:213:0,212,0:0:0:212,0:7511,0:-673.767,-63.8184,0,-673.767,-63.8184,-673.767	1/1:187:0,185,0:0:0:185,0:6525,0:-584.824,-55.6906,0,-584.824,-55.6906,-584.824	1/1:131:0,130,0:0:0:130,0:4573,0:-410.332,-39.1339,0,-410.332,-39.1339,-410.332	1/2:82:0,45,37:0:0:45,37:1584,1309:-235.278,-106.584,-93.0376,-129.046,0,-117.908	1/1:42:0,42,0:0:0:42,0:1487,0:-133.161,-12.6433,0,-133.161,-12.6433,-133.161	1/2:118:0,76,42:0:0:76,42:2684,1497:-338.861,-122.053,-99.1742,-217.162,0,-204.519	1/1:335:0,332,2:0:0:332,2:11817,72:-1061.18,-99.942,0,-1055.3,-94.0365,-1054.7	1/2:289:0,154,131:0:0:154,131:5441,4698:-822.521,-381.63,-335.272,-440.909,0,-401.474	1/2:37:0,19,18:0:0:19,18:675,648:-107.686,-52.9033,-47.1837,-55.1387,0,-49.7201	1/2:282:0,178,102:0:0:178,102:6297,3668:-810.3,-298.882,-245.299,-511.523,0,-480.818	1/2:134:0,82,52:0:0:82,52:2906,1870:-387.112,-151.967,-127.282,-235.5,0,-219.847	1/2:87:0,54,32:0:0:54,32:1903,1148:-247.859,-93.3772,-77.1216,-154.487,0,-144.854	1/1:1:0,1,0:0:0:1,0:36,0:-3.58923,-0.30103,0,-3.58923,-0.30103,-3.58923	1/2:15:0,9,6:0:0:9,6:323,216:-44.2094,-17.9346,-15.2253,-26.6333,0,-24.8271	1/1:3:0,3,0:0:0:3,0:106,0:-9.67217,-0.90309,0,-9.67217,-0.90309,-9.67217	1/1:7:0,7,0:0:0:7,0:235,0:-21.0217,-2.10721,0,-21.0217,-2.10721,-21.0217	1/1:8:0,8,0:0:0:8,0:287,0:-25.5514,-2.40824,0,-25.5514,-2.40824,-25.5514	1/1:154:0,154,0:0:0:154,0:5463,0:-490.997,-46.3586,0,-490.997,-46.3586,-490.997	1/2:143:0,89,54:0:0:89,54:3118,1928:-408.78,-156.638,-129.846,-252.495,0,-236.239	1/2:53:0,20,33:0:0:20,33:712,1182:-150.778,-94.1043,-88.0837,-57.0218,0,-47.0878	1/2:8:0,7,1:0:0:7,1:246,36:-23.2543,-3.2882,-1.18099,-20.324,0,-20.023	1/2:102:0,79,23:0:0:79,23:2770,828:-291.815,-67.5499,-43.7685,-224.621,0,-217.697	1/2:31:0,14,16:0:0:14,16:501,568:-86.3465,-45.8848,-41.6704,-40.4567,0,-35.6402	1/2:124:0,70,54:0:0:70,54:2486,1935:-358.963,-157.611,-136.539,-201.707,0,-185.451	1/2:60:0,23,37:0:0:23,37:828,1317:-174.857,-107.401,-100.477,-67.8143,0,-56.6762	1/1:55:0,55,0:0:0:55,0:1935,0:-173.64,-16.5567,0,-173.64,-16.5567,-173.64	1/1:113:0,112,0:0:0:112,0:3976,0:-357.234,-33.7154,0,-357.234,-33.7154,-357.234	1/2:169:0,83,86:0:0:83,86:2924,3076:-477.055,-245.038,-220.053,-232.363,0,-206.474	1/1:198:0,198,0:0:0:198,0:7034,0:-631.52,-59.6039,0,-631.52,-59.6039,-631.52	1/2:96:0,58,38:0:0:58,38:2048,1362:-277.431,-111,-93.54,-166.786,0,-155.347	1/2:108:0,51,57:0:0:51,57:1817,2042:-313.332,-166.114,-150.761,-147.574,0,-130.415	1/1:148:0,148,0:0:0:148,0:5217,0:-468.499,-44.5524,0,-468.499,-44.5524,-468.499	1/2:6:0,4,2:0:0:4,2:123,72:-16.0204,-6.22497,-5.02085,-10.1372,0,-9.53513	1/1:164:0,164,0:0:0:164,0:5836,0:-511.58,-49.3689,0,-511.58,-49.3689,-511.58	1/1:92:0,92,0:0:0:92,0:3261,0:-293.103,-27.6948,0,-293.103,-27.6948,-293.103	1/1:11:0,11,0:0:0:11,0:389,0:-34.206,-3.31133,0,-34.206,-3.31133,-34.206	1/1:224:0,223,0:0:0:223,0:7915,0:-709.405,-67.1297,0,-709.405,-67.1297,-709.405	1/1:16:0,16,0:0:0:16,0:571,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chr06	31387432	.	G	A	49637.8	PASS	AB=0.513881;ABP=12.3547;AC=46;AF=0.244681;AN=188;AO=2885;CIGAR=1X;DP=11561;DPB=11561;DPRA=1.35681;EPP=6172.53;EPPR=18511.8;GTI=0;LEN=1;MEANALT=1.09434;MQM=59.9563;MQMR=59.9858;NS=94;NUMALT=1;ODDS=2.83921;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103157;QR=309393;RO=8667;RPL=2874;RPP=6172.53;RPPR=18511.8;RPR=11;RUN=1;SAF=0;SAP=6267.71;SAR=2885;SRF=0;SRP=18823.2;SRR=8667;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:29,8:29:1023:8:288:-15.1293,0,-81.2436	0/1:253:112,141:112:4001:141:5062:-379.562,0,-284.118	0/1:135:56,79:56:2004:79:2835:-214.749,0,-139.994	0/0:214:213,0:213:7600:0:0:0,-64.1194,-683.679	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.932	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.488	0/0:130:129,0:129:4615:0:0:0,-38.8329,-415.154	0/1:240:112,128:112:3993:128:4568:-339.038,0,-287.312	0/0:131:129,2:129:4573:2:72:0,-32.5982,-404.899	0/1:197:129,68:129:4594:68:2432:-159.832,0,-354.323	0/1:63:39,24:39:1404:24:856:-58.3962,0,-107.694	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.622	0/1:82:50,32:50:1796:32:1148:-78.9454,0,-137.238	0/1:95:47,48:47:1683:48:1722:-126.668,0,-123.158	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/0:110:110,0:110:3916:0:0:0,-33.1133,-352.633	0/0:95:95,0:95:3388:0:0:0,-28.5978,-305.134	0/1:46:19,26:19:684:26:932:-70.409,0,-47.3186	0/0:79:79,0:79:2818:0:0:0,-23.7814,-253.858	0/0:180:179,0:179:6398:0:0:0,-53.8844,-575.549	0/0:155:154,0:154:5496:0:0:0,-46.3586,-494.409	0/1:114:48,66:48:1724:66:2364:-178.701,0,-121.128	0/0:219:219,0:219:7834:0:0:0,-65.9256,-705.088	0/1:75:32,43:32:1152:43:1544:-116.676,0,-81.4129	0/0:696:695,1:695:24770:1:36:0,-205.919,-2224.94	0/1:213:88,125:88:3110:125:4488:-339.965,0,-216.009	0/1:38:20,18:20:698:18:648:-47.0825,0,-51.7023	0/1:213:89,124:89:3187:124:4448:-336.37,0,-222.934	0/1:296:162,134:162:5796:134:4747:-338.255,0,-432.647	0/1:160:70,90:70:2495:90:3198:-239.876,0,-176.638	0/1:19:14,5:14:504:5:176:-10.4654,0,-39.9785	0/1:32:18,14:18:648:14:498:-35.522,0,-49.0189	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3237	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:238:238,0:238:8522:0:0:0,-71.6451,-766.978	0/1:362:193,169:193:6869:169:6038:-434.55,0,-509.309	0/1:86:44,42:44:1580:42:1491:-108.594,0,-116.603	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:173:83,90:83:2971:90:3226:-238.483,0,-215.544	0/1:46:17,29:17:604:29:1036:-79.7065,0,-40.8432	0/1:131:42,88:42:1493:88:3142:-243.512,0,-95.1689	0/1:90:48,42:48:1711:42:1508:-108.922,0,-127.182	0/0:98:98,0:98:3474:0:0:0,-29.5009,-312.873	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871	0/1:169:83,86:83:2958:86:3052:-224.036,0,-215.579	0/0:253:250,3:250:8930:3:108:0,-66.0854,-793.609	0/1:143:75,68:75:2671:68:2440:-176.808,0,-197.588	0/1:194:74,120:74:2644:120:4290:-327.868,0,-179.807	0/0:195:195,0:195:6948:0:0:0,-58.7008,-625.389	0/1:9:3,6:3:108:6:210:-16.5324,0,-7.3659	0/0:180:180,0:180:6431:0:0:0,-54.1854,-578.878	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.377	0/0:129:129,0:129:4619:0:0:0,-38.8329,-415.873	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/1:106:52,54:52:1849:54:1940:-142.967,0,-134.779	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/1:18:13,5:13:455:5:180:-11.1335,0,-35.8634	0/1:268:104,164:104:3698:164:5857:-446.563,0,-252.347	0/0:281:279,1:279:9939:1:36:0,-81.0499,-890.855	0/1:86:44,42:44:1568:42:1508:-110.126,0,-115.523	0/1:105:62,43:62:2203:43:1526:-106.023,0,-166.927	0/0:165:161,4:161:5760:4:144:0,-36.3563,-505.202	0/0:124:119,4:119:4240:4:140:0,-24.3601,-368.854	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:133:133,0:133:4751:0:0:0,-40.037,-427.748	0/0:107:107,0:107:3803:0:0:0,-32.2102,-342.199	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	0/0:125:125,0:125:4454:0:0:0,-37.6287,-401.031	0/1:89:53,36:53:1904:36:1287:-89.3411,0,-144.846	0/0:169:169,0:169:6046:0:0:0,-50.8741,-544.243	0/1:166:79,87:79:2824:87:3119:-230.965,0,-204.428	0/1:131:63,68:63:2256:68:2426:-179.155,0,-163.868	0/0:170:170,0:170:6059:0:0:0,-51.1751,-545.416	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:130:128,1:128:4570:1:36:0,-35.5944,-407.867	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.213	0/0:186:186,0:186:6636:0:0:0,-55.9916,-597.319	0/1:118:56,62:56:1991:62:2217:-164.259,0,-143.942	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:133:73,60:73:2612:60:2143:-153.1,0,-195.205	0/1:228:118,110:118:4212:110:3952:-287.235,0,-310.627	0/1:41:22,19:22:792:19:675:-48.7347,0,-59.2634	0/1:64:34,30:34:1205:30:1080:-78.244,0,-89.488	0/1:83:34,49:34:1224:49:1752:-132.979,0,-85.4816	0/1:35:25,10:25:900:10:360:-22.2083,0,-70.7804	0/1:92:39,53:39:1395:53:1880:-141.782,0,-98.1536	0/1:87:35,52:35:1251:52:1868:-142.21,0,-86.7047	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:136:136,0:136:4850:0:0:0,-40.9401,-436.655
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chr06	31418911	.	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chr06	31433207	.	A	G	21473.1	PASS	AB=0.514367;ABP=7.44024;AC=45;AF=0.244565;AN=184;AO=1288;CIGAR=1X;DP=5760;DPB=5760;DPRA=0.984641;EPP=2799.87;EPPR=9709.49;GTI=2;LEN=1;MEANALT=1.03922;MQM=59.9472;MQMR=59.9987;NS=92;NUMALT=1;ODDS=0.345262;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46094;QR=160328;RO=4470;RPL=1288;RPP=2799.87;RPPR=9709.49;RPR=0;RUN=1;SAF=0;SAP=2799.87;SAR=1288;SRF=0;SRP=9709.49;SRR=4470;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:27,24:27:964:24:848:-61.2871,0,-71.7243	0/1:46:33,13:33:1184:13:464:-28.2501,0,-93.0209	0/1:112:43,69:43:1536:69:2480:-189.738,0,-104.818	0/0:206:206,0:206:7388:0:0:0,-62.0122,-664.965	0/0:83:82,1:82:2944:1:36:0,-21.3872,-261.595	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:67:29,38:29:1040:38:1368:-103.252,0,-73.7454	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:53:27,26:27:972:26:921:-67.2506,0,-71.8433	0/1:21:8,13:8:288:13:460:-35.4137,0,-19.9458	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:34:17,17:17:608:17:608:-44.817,0,-44.817	0/1:34:17,17:17:612:17:612:-45.1784,0,-45.1784	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:146:145,1:145:5196:1:32:0,-40.7511,-464.579	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.444	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/1:105:59,46:59:2112:46:1656:-117.72,0,-158.74	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/1:49:26,23:26:936:23:828:-59.9636,0,-69.809	0/0:194:194,0:194:6968:0:0:0,-58.3998,-627.182	0/1:119:55,64:55:1976:64:2288:-170.359,0,-142.292	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:160:70,90:70:2512:90:3224:-242.217,0,-178.167	0/1:68:35,33:35:1260:33:1188:-86.7586,0,-93.2354	0/1:95:48,47:48:1704:47:1688:-123.609,0,-125.048	.:.:.:.:.:.:.:.	0/1:14:5,9:5:180:9:324:-24.9706,0,-12.3376	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/1:89:43,46:43:1544:46:1648:-121.817,0,-112.461	0/1:24:11,13:11:392:13:468:-35.2349,0,-28.3953	.:.:.:.:.:.:.:.	0/1:86:42,44:42:1508:44:1572:-115.883,0,-110.126	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:103:54,48:54:1944:48:1720:-124.167,0,-144.318	0/1:30:15,15:15:540:15:540:-39.9056,0,-39.9056	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.477	0/1:62:29,33:29:1044:33:1180:-87.8442,0,-75.6109	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:63:30,33:30:1080:33:1153:-85.1068,0,-78.5484	0/1:100:52,48:52:1860:48:1724:-125.342,0,-137.577	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	0/0:136:136,0:136:4884:0:0:0,-40.9401,-439.711	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:146:146,0:146:5228:0:0:0,-43.9504,-470.658	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:53:20,33:20:716:33:1169:-89.5607,0,-48.8131	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:92:58,34:58:2084:34:1216:-82.0518,0,-160.135	0/0:133:131,2:131:4689:2:72:0,-33.2003,-415.332	0/1:43:17,26:17:608:26:924:-70.5334,0,-42.1077	0/1:85:45,40:45:1616:40:1432:-103.59,0,-120.142	0/0:117:117,0:117:4212:0:0:0,-35.2205,-379.258	0/0:165:156,9:156:5589:9:320:0,-20.5276,-473.988	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/0:105:104,1:104:3720:1:36:0,-28.0099,-331.403	0/1:117:69,48:69:2461:48:1724:-120.225,0,-186.522	0/1:83:45,38:45:1616:38:1368:-98.4353,0,-120.745	0/0:68:65,3:65:2336:3:108:0,-10.3949,-200.424	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/1:37:14,22:14:504:22:788:-60.1913,0,-34.641	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:23:7,16:7:252:16:568:-44.5282,0,-16.1053	0/1:65:38,27:38:1360:27:959:-67.0584,0,-103.134	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:44:17,27:17:612:27:968:-74.174,0,-42.1681	0/1:40:20,20:20:716:20:716:-52.7265,0,-52.7265	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	0/1:64:21,43:21:756:43:1539:-119.536,0,-49.1013	0/1:30:7,23:7:252:23:817:-64.8199,0,-13.9981	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399
chr06	31520191	.	G	A	150403	PASS	AB=0.613359;ABP=350.583;AC=145;AF=0.771277;AN=188;AO=6888;CIGAR=1X;DP=8106;DPB=8106;DPRA=29.043;EPP=14830.1;EPPR=2608.89;GTI=7;LEN=1;MEANALT=1.02151;MQM=59.9917;MQMR=60;NS=94;NUMALT=1;ODDS=0.187354;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246926;QR=43438;RO=1216;RPL=15;RPP=14830.1;RPPR=2608.89;RPR=6873;RUN=1;SAF=0;SAP=14960.1;SAR=6888;SRF=0;SRP=2643.52;SRR=1216;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:17,27:17:603:27:947:-72.2969,0,-41.3542	0/1:73:30,43:30:1072:43:1548:-117.638,0,-74.8173	0/1:195:68,127:68:2440:127:4549:-350.873,0,-161.154	1/1:261:0,261:0:0:261:9368:-843.078,-78.5688,0	1/1:90:0,90:0:0:90:3230:-290.921,-27.0927,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:132:0,132:0:0:132:4733:-426.126,-39.736,0	0/1:102:35,67:35:1260:67:2404:-185.903,0,-83.0004	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	0/1:63:20,43:20:720:43:1540:-119.928,0,-46.1639	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:52:0,52:0:0:52:1857:-167.409,-15.6536,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:39:19,20:19:680:20:720:-53.3886,0,-49.789	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:223:0,223:0:0:223:8002:-720.198,-67.1297,0	1/1:133:0,133:0:0:133:4768:-429.277,-40.037,0	1/1:170:0,170:0:0:170:6108:-549.817,-51.1751,0	0/1:125:43,82:43:1532:82:2931:-226.394,0,-100.544	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:69:15,54:15:540:54:1936:-153.745,0,-28.1655	1/1:318:0,318:0:0:318:11397:-1025.6,-95.7275,0	0/1:185:62,123:62:2228:123:4377:-338.411,0,-145.093	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0491	0/1:233:63,170:63:2264:170:6092:-478.24,0,-133.882	0/1:75:32,43:32:1135:43:1540:-116.316,0,-79.8808	0/1:98:42,56:42:1512:56:2008:-151.492,0,-106.874	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/1:165:45,120:45:1607:120:4316:-338.944,0,-95.2494	0/1:21:13,8:13:453:8:288:-19.9458,0,-34.778	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:86:32,54:32:1152:54:1930:-148.086,0,-78.1016	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:151:69,82:69:2463:82:2944:-219.738,0,-176.468	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:182:0,182:0:0:182:6540:-588.679,-54.7875,0	0/1:121:26,95:26:932:95:3410:-270.689,0,-47.7742	1/1:177:0,177:0:0:177:6360:-572.487,-53.2823,0	0/1:68:19,49:19:676:49:1756:-137.854,0,-40.698	0/1:73:26,47:26:932:47:1692:-130.592,0,-62.2237	1/1:175:0,175:0:0:175:6288:-566.01,-52.6803,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:209:0,209:0:0:209:7500:-675.038,-62.9153,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:169:0,169:0:0:169:6031:-542.892,-50.8741,0	1/1:65:0,65:0:0:65:2331:-210.049,-19.567,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:62:4,58:4:144:58:2084:-174.516,-5.35024,0	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:275:152,123:152:5388:123:4410:-314.288,0,-402.269	1/1:228:0,228:0:0:228:8189:-737.018,-68.6348,0	0/1:40:17,23:17:604:23:828:-62.8029,0,-42.6494	0/1:76:27,49:27:972:49:1751:-134.995,0,-64.9196	1/1:210:3,207:3:108:207:7420:-657.769,-53.1411,0	1/1:174:1,173:1:36:173:6200:-554.497,-48.7809,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:28:18,10:18:648:10:360:-24.3155,0,-50.223	1/1:102:0,101:0:0:101:3595:-323.398,-30.404,0	0/1:94:55,39:55:1926:39:1393:-97.3711,0,-145.316	1/1:168:0,167:0:0:167:5968:-537.013,-50.272,0	0/1:195:74,121:74:2655:121:4336:-331.714,0,-180.494	0/1:69:16,53:16:572:53:1904:-150.867,0,-31.0424	1/1:115:0,115:0:0:115:4117:-370.712,-34.6185,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:109:0,109:0:0:109:3900:-351.194,-32.8123,0	1/1:107:1,106:1:36:106:3808:-339.318,-28.6119,0	1/1:271:0,271:0:0:271:9723:-875.013,-81.5791,0	0/1:65:32,33:32:1134:33:1170:-85.9513,0,-82.8003	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:52:24,28:24:855:28:999:-74.5709,0,-61.6166	0/1:17:8,9:8:288:9:315:-23.5697,0,-21.1499	0/1:35:13,22:13:468:22:792:-61.0696,0,-31.9236	0/1:31:18,13:18:639:13:459:-32.3122,0,-48.5063	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	1/1:279:0,279:0:0:279:9985:-898.586,-83.9874,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0
chr06	31520197	.	A	G	18622.4	PASS	AB=0.386829;ABP=350.99;AC=43;AF=0.228723;AN=188;AO=1225;CIGAR=1X;DP=8159;DPB=8159;DPRA=0.918213;EPP=2483.79;EPPR=14191.2;GTI=6;LEN=1;MEANALT=1.02174;MQM=60;MQMR=59.9967;NS=94;NUMALT=1;ODDS=1.84427;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43862;QR=248511;RO=6932;RPL=1204;RPP=2483.79;RPPR=14191.2;RPR=21;RUN=1;SAF=0;SAP=2663.06;SAR=1225;SRF=0;SRP=15055.7;SRR=6932;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:27,16:27:972:16:576:-39.2307,0,-74.8536	0/1:72:42,30:42:1512:30:1080:-75.8391,0,-114.7	0/1:196:127,69:127:4572:69:2476:-164.092,0,-352.641	0/0:263:263,0:263:9445:0:0:0,-79.1709,-850.002	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/0:134:134,0:134:4781:0:0:0,-40.338,-430.447	0/1:101:66,35:66:2368:35:1260:-83.3015,0,-182.974	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.475	0/1:65:43,22:43:1548:22:792:-52.0387,0,-120.046	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:37:19,18:19:684:18:644:-47.1525,0,-50.7522	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:226:226,0:226:8078:0:0:0,-68.0328,-727.036	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.753	0/0:170:170,0:170:6097:0:0:0,-51.1751,-548.828	0/1:129:86,43:86:3069:43:1543:-100.33,0,-237.605	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:69:54,15:54:1944:15:532:-27.442,0,-154.465	0/0:323:323,0:323:11557:0:0:0,-97.2327,-1040	0/1:186:124,62:124:4452:62:2221:-144.162,0,-344.858	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/1:232:169,63:169:6053:63:2240:-132.024,0,-475.032	0/1:76:44,32:44:1584:32:1134:-79.489,0,-119.973	0/1:99:56,42:56:2012:42:1500:-105.433,0,-151.492	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/1:166:120,46:120:4308:46:1648:-98.6376,0,-337.924	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	1/1:5:0,5:0:0:5:161:-14.8066,-1.50515,0	0/1:88:55,33:55:1972:33:1179:-79.9266,0,-151.256	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:154:83,71:83:2961:71:2537:-182.221,0,-220.363	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:185:185,0:185:6635:0:0:0,-55.6905,-597.226	0/1:123:97,26:97:3488:26:936:-47.5328,0,-277.103	0/0:178:178,0:178:6400:0:0:0,-53.5833,-576.085	0/1:69:50,19:50:1788:19:684:-41.1193,0,-140.432	0/1:74:47,27:47:1658:27:968:-65.1611,0,-127.227	0/0:175:175,0:175:6256:0:0:0,-52.6802,-563.133	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:211:211,0:211:7522:0:0:0,-63.5173,-677.006	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:169:168,0:168:6032:0:0:0,-50.573,-542.691	0/0:66:66,0:66:2367:0:0:0,-19.868,-213.287	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:63:58,5:58:2080:5:180:0,-2.41282,-170.918	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:275:121,154:121:4352:154:5527:-414.77,0,-309.069	0/0:233:232,1:232:8309:1:36:0,-66.5417,-744.218	0/1:42:25,17:25:900:17:605:-42.1373,0,-68.6778	0/1:73:47,26:47:1683:26:936:-62.5843,0,-129.781	0/0:212:209,3:209:7485:3:108:0,-53.7432,-663.615	0/0:178:177,1:177:6352:1:36:0,-49.9851,-568.17	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.484	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:27:10,17:10:360:17:612:-47.2856,0,-24.6165	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:94:39,55:39:1400:55:1963:-148.648,0,-98.0024	0/0:167:167,0:167:5989:0:0:0,-50.272,-539.113	0/1:197:123,74:123:4384:74:2664:-180.702,0,-335.43	0/1:69:54,15:54:1932:15:540:-28.1655,0,-153.386	0/0:112:112,0:112:4028:0:0:0,-33.7154,-362.707	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:108:108,0:108:3884:0:0:0,-32.5112,-349.753	0/0:111:111,0:111:3977:0:0:0,-33.4143,-358.118	0/0:269:269,0:269:9672:0:0:0,-80.9771,-870.425	0/1:64:32,32:32:1148:32:1148:-84.3639,0,-84.3639	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:52:27,25:27:968:25:896:-65.3068,0,-71.7838	0/1:19:10,9:10:356:9:320:-23.4228,0,-26.6617	0/1:34:22,12:22:788:12:420:-27.8984,0,-61.0098	0/1:31:13,18:13:464:18:640:-48.5974,0,-32.7656	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/1:30:14,16:14:504:16:572:-42.7825,0,-36.6672	0/0:285:285,0:285:10221:0:0:0,-85.7935,-919.813	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399
chr06	31564482	.	A	C	56564.7	PASS	AB=0.485259;ABP=15.5583;AC=46;AF=0.244681;AN=188;AO=3244;CIGAR=1X;DP=13104;DPB=13104;DPRA=1.15788;EPP=6427.47;EPPR=18919.4;GTI=0;LEN=1;MEANALT=1.01818;MQM=59.9812;MQMR=59.9973;NS=94;NUMALT=1;ODDS=2.58999;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115417;QR=353367;RO=9856;RPL=73;RPP=6427.47;RPPR=18919.4;RPR=3171;RUN=1;SAF=3244;SAP=7047.27;SAR=0;SRF=9856;SRP=21405;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:19,27:19:665:27:957:-72.5975,0,-46.325	0/1:221:112,109:112:4001:109:3890:-283.766,0,-293.751	0/1:141:57,84:57:2048:84:2999:-227.696,0,-142.146	0/0:187:186,1:186:6680:1:36:0,-52.6943,-597.676	0/0:110:109,1:109:3896:1:36:0,-29.515,-347.236	0/0:103:103,0:103:3677:0:0:0,-31.0061,-331.132	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.889	0/1:215:109,106:109:3908:106:3746:-272.62,0,-287.191	0/0:152:152,0:152:5449:0:0:0,-45.7566,-490.536	0/1:181:105,76:105:3768:76:2720:-190.557,0,-284.832	0/1:115:63,52:63:2264:52:1839:-131.17,0,-169.404	0/0:105:105,0:105:3780:0:0:0,-31.6081,-340.397	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:132:68,64:68:2448:64:2283:-165.995,0,-180.838	0/1:94:45,49:45:1612:49:1756:-130.027,0,-117.073	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:124:124,0:124:4460:0:0:0,-37.3277,-401.568	0/0:97:97,0:97:3471:0:0:0,-29.1999,-312.601	0/1:54:24,30:24:864:30:1076:-80.8972,0,-61.8269	0/0:242:242,0:242:8676:0:0:0,-72.8493,-780.831	0/0:205:205,0:205:7368:0:0:0,-61.7111,-663.164	0/0:85:85,0:85:3033:0:0:0,-25.5875,-273.199	0/1:125:65,60:65:2328:60:2098:-151.458,0,-172.151	0/0:177:177,0:177:6318:0:0:0,-53.2823,-568.71	0/1:113:46,67:46:1656:67:2400:-182.236,0,-115.312	0/0:438:438,0:438:15724:0:0:0,-131.851,-1414.85	0/1:297:159,138:159:5685:138:4901:-351.834,0,-422.357	0/1:69:39,30:39:1404:30:1061:-75.0283,0,-105.888	0/1:322:171,151:171:6136:151:5353:-384.974,0,-455.406	0/1:347:196,151:196:7040:151:5357:-377.804,0,-529.201	0/1:198:74,124:74:2644:124:4403:-336.841,0,-178.603	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:254:254,0:254:9124:0:0:0,-76.4616,-821.129	0/1:284:148,136:148:5312:136:4836:-349.903,0,-392.72	0/1:109:58,51:58:2084:51:1814:-130.728,0,-155.018	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:170:100,70:100:3592:70:2482:-172.458,0,-272.311	0/1:53:25,28:25:900:28:985:-73.0069,0,-65.3664	0/1:177:106,71:106:3785:71:2531:-174.758,0,-287.565	0/1:145:60,85:60:2156:85:3024:-228.74,0,-150.658	0/0:89:88,1:88:3160:1:36:0,-23.1934,-281.026	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.776	0/1:192:112,79:112:4008:79:2828:-196.902,0,-303.053	0/0:250:246,4:246:8844:4:144:0,-61.9439,-782.626	0/1:110:56,54:56:2012:54:1940:-141.763,0,-148.24	0/1:311:167,144:167:5972:144:5141:-369.21,0,-443.967	0/0:125:125,0:125:4492:0:0:0,-37.6287,-404.447	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:168:168,0:168:6013:0:0:0,-50.573,-541.273	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.455	0/0:170:170,0:170:6088:0:0:0,-51.1751,-548.021	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:154:90,64:90:3206:64:2296:-160.542,0,-242.402	0/0:142:142,0:142:5100:0:0:0,-42.7463,-459.141	0/1:15:3,12:3:108:12:423:-33.8896,0,-5.55972	0/1:237:117,120:117:4193:120:4261:-312.326,0,-306.205	0/0:258:254,4:254:9093:4:144:0,-64.3521,-805.03	0/1:119:73,46:73:2620:46:1636:-111.706,0,-200.225	0/1:103:46,57:46:1648:57:2000:-149.231,0,-117.599	0/0:251:249,2:249:8917:2:72:0,-68.7218,-795.674	0/0:167:167,0:167:6004:0:0:0,-50.272,-540.462	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:92:89,3:89:3196:3:108:0,-17.6196,-277.787	0/0:109:108,1:108:3876:1:36:0,-29.214,-345.436	0/1:59:29,30:29:1040:30:1059:-77.8597,0,-76.1536	0/0:155:154,0:154:5517:0:0:0,-46.3586,-496.293	0/1:123:50,73:50:1792:73:2604:-197.582,0,-124.536	0/0:306:306,0:306:10956:0:0:0,-92.1152,-985.937	0/1:224:114,110:114:4073:110:3931:-286.552,0,-299.325	0/1:283:143,140:143:5121:140:4978:-362.978,0,-375.839	0/0:205:205,0:205:7353:0:0:0,-61.7111,-661.815	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:133:132,1:132:4721:1:36:0,-36.4387,-421.45	0/0:153:153,0:153:5491:0:0:0,-46.0576,-494.314	0/0:269:267,0:267:9528:0:0:0,-80.375,-857.142	0/1:114:63,51:63:2264:51:1809:-128.772,0,-169.705	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.586	0/1:144:65,79:65:2340:79:2808:-209.613,0,-167.511	0/1:203:110,93:110:3956:93:3309:-236.915,0,-295.116	0/1:57:33,24:33:1188:24:851:-59.7507,0,-90.0699	0/1:129:69,60:69:2476:60:2147:-154.664,0,-184.261	0/1:92:51,41:51:1836:41:1468:-104.721,0,-137.826	0/1:114:54,60:54:1940:60:2144:-158.91,0,-140.559	0/1:133:76,57:76:2732:57:2005:-140.685,0,-206.085	0/1:92:35,57:35:1256:57:2044:-156.537,0,-85.6505	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.451	0/0:143:143,0:143:5128:0:0:0,-43.0473,-461.661
chr06	31577310	.	G	C	68320.3	PASS	AB=0.499242;ABP=3.02018;AC=141;AF=0.758065;AN=186;AO=3232;CIGAR=1X;DP=4230;DPB=4230;DPRA=0;EPP=6995.18;EPPR=2154.95;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9616;MQMR=59.9276;NS=93;NUMALT=1;ODDS=1.523;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115316;QR=35482;RO=995;RPL=0;RPP=7021.21;RPPR=2163.63;RPR=3232;RUN=1;SAF=3229;SAP=6995.18;SAR=3;SRF=994;SRP=2154.95;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:20,16:20:720:16:563:-40.1613,0,-54.2917	0/1:27:14,13:14:504:13:464:-33.9697,0,-37.5703	0/1:66:31,35:31:1089:35:1252:-93.1171,0,-78.4346	1/1:85:0,85:0:0:85:3044:-274.184,-25.5876,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:25:0,25:0:0:25:877:-79.2452,-7.52575,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:52:23,29:23:824:29:1032:-77.5399,0,-58.8298	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:36:13,23:13:464:23:828:-64.007,0,-31.2604	0/1:40:28,12:28:1008:12:428:-26.8176,0,-78.9948	1/1:97:0,97:0:0:97:3454:-311.073,-29.1999,0	1/1:81:0,81:0:0:81:2877:-259.166,-24.3834,0	0/1:47:21,26:21:737:26:932:-70.0505,0,-52.5022	0/1:92:49,43:49:1764:43:1539:-111.108,0,-131.349	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:28:0,28:0:0:28:999:-90.2251,-8.42884,0	0/1:26:18,8:18:648:8:288:-18.4406,0,-50.8251	1/1:29:0,29:0:0:29:1024:-92.4726,-8.72987,0	1/1:75:0,75:0:0:75:2671:-240.078,-22.5773,0	1/1:21:0,21:0:0:21:737:-66.6514,-6.32163,0	0/1:43:17,26:17:612:26:927:-70.8039,0,-42.4609	1/1:18:1,17:1:36:17:608:-51.4537,-1.82027,0	0/1:37:21,16:21:741:16:564:-39.9522,0,-55.8735	1/1:81:0,81:0:0:81:2874:-258.897,-24.3834,0	0/1:94:42,52:42:1496:52:1852:-138.663,0,-106.638	0/1:23:11,12:11:392:12:432:-32.2975,0,-28.6964	0/1:87:42,45:42:1485:45:1588:-117.021,0,-107.751	0/1:39:14,25:14:504:25:900:-69.5808,0,-33.9579	0/1:39:22,17:22:777:17:604:-42.9504,0,-58.5102	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	1/1:166:0,166:0:0:166:5952:-534.85,-49.971,0	0/1:32:18,14:18:633:14:504:-36.0651,0,-47.6621	0/1:39:23,16:23:813:16:566:-39.53,0,-61.7489	.:.:.:.:.:.:.:.	0/1:30:14,16:14:504:16:568:-42.421,0,-36.6672	0/1:36:21,15:21:752:15:524:-36.652,0,-57.1692	0/1:74:44,30:44:1557:30:1076:-74.8766,0,-118.143	0/1:57:36,21:36:1292:21:748:-50.4866,0,-99.4251	1/1:50:0,50:0:0:50:1783:-160.738,-15.0515,0	1/1:60:0,60:0:0:60:2117:-190.797,-18.0618,0	0/1:38:13,25:13:464:25:888:-68.7999,0,-30.6584	1/1:45:0,44:0:0:44:1572:-141.393,-13.2453,0	0/1:29:15,14:15:510:14:487:-35.4293,0,-37.4882	0/1:36:16,20:16:568:20:704:-52.8475,0,-40.6148	1/1:24:0,24:0:0:24:856:-77.3605,-7.22472,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:57:0,57:0:0:57:2031:-183.062,-17.1587,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:46:22,24:22:788:24:860:-63.8745,0,-57.3974	1/1:72:0,72:0:0:72:2572:-231.73,-21.6742,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:47:18,29:18:648:29:1040:-79.766,0,-44.5035	1/1:59:1,58:1:36:58:2073:-183.241,-14.1625,0	0/1:29:4,24:4:129:24:864:-69.2939,0,-3.14649	0/1:30:17,13:17:597:13:460:-32.7045,0,-45.0252	1/1:64:2,62:2:72:62:2199:-191.338,-12.4292,0	1/1:61:1,59:1:36:59:2092:-185.025,-14.7484,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:54:0,54:0:0:54:1936:-174.515,-16.2556,0	0/1:10:4,6:4:140:6:212:-16.4145,0,-9.93428	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:42:22,20:22:792:20:711:-51.6724,0,-58.9624	1/1:90:0,90:0:0:90:3205:-288.673,-27.0927,0	0/1:51:26,25:26:913:25:888:-64.8865,0,-67.1315	0/1:32:19,13:19:661:13:464:-32.4645,0,-50.1787	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	0/1:56:31,25:31:1112:25:888:-63.3813,0,-83.4887	1/1:66:0,66:0:0:66:2363:-212.928,-19.868,0	0/1:43:20,23:20:720:23:828:-61.8998,0,-52.1845	0/1:127:66,61:66:2376:61:2192:-159.315,0,-175.867	0/1:20:7,13:7:252:13:460:-35.7148,0,-17.0084	0/1:56:26,30:26:932:30:1076:-80.2952,0,-67.341	0/1:57:37,20:37:1332:20:716:-47.609,0,-103.024	0/1:40:23,17:23:824:17:608:-43.0108,0,-62.4063	0/1:69:24,45:24:864:45:1612:-124.599,0,-57.3115	0/1:53:35,18:35:1256:18:648:-42.6973,0,-97.3907	1/1:42:0,42:0:0:42:1500:-135.29,-12.6433,0	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0
chr06	31577344	.	A	C	10297.8	PASS	AB=0.28777;ABP=1308.14;AC=43;AF=0.231183;AN=186;AO=968;CIGAR=1X;DP=8574;DPB=8574;DPRA=0.74926;EPP=2096.32;EPPR=16423.8;GTI=7;LEN=1;MEANALT=1;MQM=59.9256;MQMR=59.9583;NS=93;NUMALT=1;ODDS=0.076656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33942;QR=271985;RO=7606;RPL=959;RPP=2027.55;RPPR=337.246;RPR=9;RUN=1;SAF=958;SAP=2019.03;SAR=10;SRF=3251;SRP=350.976;SRR=4355;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:23,20:23:828:20:684:-48.9322,0,-61.8998	0/1:73:61,12:61:2192:12:428:-16.8836,0,-175.57	0/1:99:70,29:70:2499:29:1008:-61.2114,0,-195.36	0/0:170:170,0:170:6069:0:0:0,-51.1751,-546.313	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.319	0/1:108:85,23:85:3048:23:801:-39.8955,0,-242.038	0/0:126:126,0:126:4536:0:0:0,-37.9298,-408.404	0/1:68:56,12:56:1993:12:424:-18.0264,0,-159.172	0/1:75:48,27:48:1711:27:958:-63.9586,0,-131.698	0/0:190:190,0:190:6772:0:0:0,-57.1957,-609.554	0/0:150:150,0:150:5353:0:0:0,-45.1545,-481.713	0/1:88:68,20:68:2424:20:716:-38.2771,0,-191.926	0/1:139:88,51:88:3160:51:1782:-118.815,0,-242.779	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.787	0/0:107:107,0:107:3835:0:0:0,-32.2102,-345.345	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/1:53:35,18:35:1252:18:648:-42.6973,0,-97.0281	0/0:81:81,0:81:2884:0:0:0,-24.3834,-259.798	0/0:147:147,0:147:5237:0:0:0,-44.2514,-470.613	0/0:42:42,0:42:1512:0:0:0,-12.6433,-134.922	0/1:59:45,14:45:1604:14:491:-26.7593,0,-126.889	0/0:104:103,1:103:3692:1:36:0,-27.7088,-328.884	0/1:46:28,18:28:1008:18:640:-44.0819,0,-77.189	0/0:197:197,0:197:7047:0:0:0,-59.3029,-634.29	0/1:155:116,39:116:4137:39:1371:-77.0281,0,-325.846	0/1:41:30,11:30:1071:11:374:-21.6442,0,-84.3594	0/1:120:78,42:78:2795:42:1488:-98.0886,0,-215.666	0/1:64:49,15:49:1751:15:517:-27.5887,0,-138.607	0/1:75:53,22:53:1900:22:792:-49.0284,0,-148.701	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.0752	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:366:366,0:366:13119:0:0:0,-110.177,-1179.58	0/1:58:42,16:42:1504:16:572:-34.3537,0,-118.193	0/1:87:65,22:65:2331:22:747:-41.3527,0,-183.859	.:.:.:.:.:.:.:.	0/1:65:50,15:50:1777:15:540:-29.3696,0,-140.644	0/1:50:29,21:29:1035:21:748:-52.5938,0,-78.4116	0/1:93:50,43:50:1791:43:1495:-106.844,0,-133.476	0/1:107:73,34:73:2620:34:1192:-75.3722,0,-203.837	0/0:114:114,0:114:4057:0:0:0,-34.3174,-365.317	0/0:115:115,0:115:4120:0:0:0,-34.6184,-370.983	0/1:63:51,12:51:1832:12:428:-19.8939,0,-146.196	0/0:119:119,0:119:4264:0:0:0,-35.8226,-383.893	0/1:59:43,16:43:1524:16:531:-30.3391,0,-119.69	0/1:77:60,17:60:2129:17:580:-29.3401,0,-168.697	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/0:15:14,1:14:500:1:36:0,-0.917175,-41.7379	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.513	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.776	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:125:125,0:125:4446:0:0:0,-37.6287,-400.31	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:82:61,21:61:2183:21:706:-39.1664,0,-172.051	0/0:182:182,0:182:6490:0:0:0,-54.7875,-584.183	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:80:63,17:63:2260:17:612:-31.331,0,-179.579	0/0:146:145,1:145:5164:1:36:0,-40.3521,-461.303	0/0:38:35,3:35:1243:3:108:0,-1.36397,-102.099	0/1:44:27,17:27:953:17:603:-41.3542,0,-72.838	0/0:147:146,1:146:5219:1:32:0,-41.0521,-466.649	0/0:114:113,1:113:4052:1:36:0,-30.7191,-361.268	0/0:84:84,0:84:3011:0:0:0,-25.2865,-271.216	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.286	0/0:173:173,0:173:6180:0:0:0,-52.0782,-556.24	0/1:19:15,4:15:536:4:140:-7.22501,0,-42.8552	0/0:67:67,0:67:2390:0:0:0,-20.169,-215.342	0/1:72:50,22:50:1792:22:792:-49.9315,0,-139.888	0/0:202:202,0:202:7228:0:0:0,-60.8081,-650.572	0/1:85:60,25:60:2152:25:878:-53.7489,0,-168.357	0/1:69:50,19:50:1788:19:676:-40.3969,0,-140.432	0/0:76:76,0:76:2727:0:0:0,-22.8783,-245.671	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:122:122,0:122:4355:0:0:0,-36.7257,-392.125	0/0:91:91,0:91:3251:0:0:0,-27.3937,-292.807	0/0:167:167,0:167:5973:0:0:0,-50.272,-537.675	0/1:118:90,28:90:3220:28:973:-52.3556,0,-254.501	0/0:136:136,0:136:4871:0:0:0,-40.9401,-438.54	0/1:105:85,20:85:3052:20:716:-33.1596,0,-243.301	0/1:213:149,64:149:5319:64:2243:-138.012,0,-414.723	0/1:43:37,6:37:1319:6:204:-5.74908,0,-106.067	0/1:88:63,25:63:2238:25:872:-52.3044,0,-175.192	0/1:99:62,37:62:2206:37:1312:-88.5797,0,-169.002	0/1:66:46,20:46:1652:20:681:-41.7317,0,-129.1	0/1:102:78,24:78:2796:24:828:-44.1282,0,-221.175	0/1:78:38,40:38:1368:40:1395:-102.363,0,-99.9405	0/0:112:112,0:112:3997:0:0:0,-33.7154,-359.901	0/0:221:221,0:221:7894:0:0:0,-66.5276,-710.485
chr06	31577425	.	C	A	59919.9	PASS	AB=0.499241;ABP=3.03666;AC=47;AF=0.25;AN=188;AO=2645;CIGAR=1X;DP=10595;DPB=10595;DPRA=1.05102;EPP=5746.55;EPPR=17235.8;GTI=1;LEN=1;MEANALT=1.11538;MQM=59.9796;MQMR=59.9989;NS=94;NUMALT=1;ODDS=4.74875;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93991;QR=282073;RO=7940;RPL=1325;RPP=3.03082;RPPR=3.86795;RPR=1320;RUN=1;SAF=1325;SAP=3.03082;SAR=1320;SRF=3941;SRP=3.9303;SRR=3999;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:19,11:19:657:11:387:-25.8125,0,-50.0983	0/1:190:102,88:102:3606:88:3133:-224.995,0,-267.55	0/1:99:42,57:42:1504:57:2025:-152.719,0,-105.853	0/0:158:158,0:158:5636:0:0:0,-47.5627,-507.361	0/0:52:51,1:51:1811:1:36:0,-12.0553,-159.673	0/0:47:47,0:47:1652:0:0:0,-14.1484,-148.965	0/0:142:142,0:142:5024:0:0:0,-42.7463,-452.308	0/1:152:75,77:75:2640:77:2710:-198.386,0,-192.087	0/0:82:82,0:82:2894:0:0:0,-24.6845,-260.695	0/1:82:41,41:41:1459:41:1457:-106.74,0,-106.921	0/1:171:83,88:83:2923:88:3131:-230.541,0,-211.829	0/0:180:180,0:180:6382:0:0:0,-54.1854,-574.473	0/0:155:155,0:155:5467:0:0:0,-46.6596,-492.159	0/1:183:89,93:89:3109:93:3310:-242.972,0,-224.891	0/1:144:76,68:76:2689:68:2431:-175.697,0,-198.906	0/0:129:129,0:129:4579:0:0:0,-38.8329,-412.276	0/0:135:135,0:135:4759:0:0:0,-40.639,-428.47	0/0:128:128,0:128:4574:0:0:0,-38.5318,-411.825	0/1:125:71,54:71:2529:54:1915:-134.998,0,-190.231	0/0:126:126,0:126:4507:0:0:0,-37.9298,-405.798	0/0:128:128,0:128:4554:0:0:0,-38.5318,-410.028	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:79:37,42:37:1305:42:1500:-111.513,0,-93.968	0/0:104:103,1:103:3659:1:36:0,-27.7088,-325.915	0/1:87:52,35:52:1854:35:1232:-84.9922,0,-140.949	0/0:206:206,0:206:7351:0:0:0,-62.0122,-661.639	0/1:154:78,76:78:2787:76:2694:-196.345,0,-204.712	0/1:115:53,62:53:1848:62:2203:-163.916,0,-131.979	0/1:158:78,80:78:2786:80:2864:-210.435,0,-203.417	0/1:60:36,24:36:1275:24:864:-60.0208,0,-96.9905	0/1:101:50,51:50:1783:51:1817:-133.405,0,-130.348	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:430:430,0:430:15290:0:0:0,-129.443,-1375.82	0/1:72:39,33:39:1383:33:1167:-83.6622,0,-103.094	0/1:179:93,86:93:3319:86:3040:-219.946,0,-245.044	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:100:47,53:47:1684:53:1896:-140.759,0,-121.744	0/1:86:41,45:41:1433:45:1600:-118.402,0,-103.375	0/1:131:76,55:76:2717:55:1961:-137.329,0,-205.337	0/1:212:110,102:110:3914:102:3626:-262.725,0,-288.636	0/0:138:138,0:138:4870:0:0:0,-41.5421,-438.451	0/0:86:86,0:86:3045:0:0:0,-25.8886,-274.28	0/1:106:57,49:57:2035:49:1726:-123.713,0,-151.512	0/0:108:108,0:108:3859:0:0:0,-32.5112,-347.505	0/1:117:61,56:61:2175:56:1991:-144.243,0,-160.795	0/1:119:64,55:64:2287:55:1962:-141.009,0,-170.268	0/0:105:105,0:105:3759:0:0:0,-31.6081,-338.509	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:121:120,1:120:4308:1:36:0,-32.8264,-384.297	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.29	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:78:39,39:39:1387:39:1373:-100.386,0,-101.648	0/0:192:192,0:192:6803:0:0:0,-57.7978,-612.345	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:89:43,45:43:1540:45:1597:-117.168,0,-112.043	0/0:169:168,1:168:6024:1:36:0,-47.2758,-538.665	0/1:64:37,27:37:1313:27:949:-66.4569,0,-99.2038	0/1:76:38,38:38:1345:38:1339:-97.9301,0,-98.4699	0/0:131:129,1:129:4579:1:36:0,-35.8955,-408.678	0/0:108:108,0:108:3856:0:0:0,-32.5112,-347.237	0/0:82:82,0:82:2923:0:0:0,-24.6845,-263.305	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:242:239,0:239:8472:0:0:0,-71.9462,-762.124	0/1:19:12,7:12:428:7:252:-17.3094,0,-33.1392	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:60:30,30:30:1064:30:1063:-77.919,0,-78.0099	0/0:179:179,0:179:6317:0:0:0,-53.8844,-568.624	0/1:128:53,75:53:1892:75:2676:-202.553,0,-132.026	0/1:103:52,50:52:1841:50:1753:-126.984,0,-134.904	0/0:90:90,0:90:3210:0:0:0,-27.0927,-289.122	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:111:111,0:111:3938:0:0:0,-33.4143,-354.612	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.04	0/0:224:223,0:223:7975:0:0:0,-67.1297,-717.413	0/1:255:147,108:147:5167:108:3833:-268.405,0,-388.411	0/0:136:134,2:134:4737:2:72:0,-34.1034,-419.651	0/1:195:99,95:99:3504:95:3367:-244.487,0,-256.809	0/1:310:150,160:150:5316:160:5674:-417.461,0,-385.256	0/1:92:35,57:35:1241:57:2030:-155.276,0,-84.2977	0/1:175:88,87:88:3075:87:3104:-226.908,0,-224.298	0/1:143:59,84:59:2068:84:3003:-227.454,0,-143.342	0/1:105:51,54:51:1823:54:1936:-142.908,0,-132.742	0/1:152:73,79:73:2619:79:2815:-207.833,0,-190.2	0/1:157:49,108:49:1739:108:3833:-297.903,0,-109.532	0/0:106:106,0:106:3763:0:0:0,-31.9092,-338.869	0/0:274:274,0:274:9740:0:0:0,-82.4822,-876.553
chr06	31596935	.	ATTT	GTTC,ATTC	147060	PASS	AB=0.356374,0.641926;ABP=635.503,620.621;AC=138,48;AF=0.741935,0.258065;AN=186;AO=4162,2277;CIGAR=1X2M1X,3M1X;DP=6455;DPB=6455;DPRA=70.1522,1.414;EPP=9040.68,4947.45;EPPR=0;GTI=7;LEN=4,1;MEANALT=1.77174,2.14035;MQM=42.3582,37.8138;MQMR=0;NS=93;NUMALT=2;ODDS=1.04592;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=145618,81040;QR=0;RO=0;RPL=543,1016;RPP=4939.58,60.2534;RPPR=0;RPR=3619,1261;RUN=1,1;SAF=543,1016;SAP=4939.58,60.2534;SAR=3619,1261;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:56:0,17,39:0:0:17,39:583,1392:-152.893,-106.042,-100.924,-47.1898,0,-35.4497	1/2:88:0,32,56:0:0:32,56:1116,2004:-239.304,-150.454,-140.821,-89.1883,0,-72.3306	1/2:92:0,38,54:0:0:38,54:1316,1914:-245.914,-140.699,-129.26,-105.548,0,-89.2928	1/1:108:0,106,0:0:0:106,0:3707,0:-328.217,-31.9092,0,-328.217,-31.9092,-328.217	1/1:35:0,34,1:0:0:34,1:1204,36:-107.186,-10.235,0,-105.105,-7.88745,-104.804	1/1:23:0,23,0:0:0:23,0:797,0:-71.1108,-6.92369,0,-71.1108,-6.92369,-71.1108	1/1:51:0,49,1:0:0:49,1:1708,36:-151.347,-14.7505,0,-149.514,-12.9766,-149.213	1/2:113:0,35,78:0:0:35,78:1233,2756:-310.295,-211.089,-200.553,-99.5507,0,-76.0703	1/1:99:0,99,0:0:0:99,0:3460,0:-305.121,-29.802,0,-305.121,-29.802,-305.121	1/2:92:0,27,65:0:0:27,65:937,2319:-251.088,-175.845,-167.717,-75.5838,0,-56.0168	1/2:63:0,14,49:0:0:14,49:487,1727:-169.935,-130.947,-126.732,-39.3283,0,-24.5778	1/1:47:0,46,1:0:0:46,1:1607,32:-142.346,-13.8474,0,-140.471,-11.7272,-140.169	1/1:66:0,65,0:0:0:65,0:2257,0:-199.854,-19.567,0,-199.854,-19.567,-199.854	1/2:61:0,25,35:0:0:25,35:866,1252:-162.032,-94.4689,-86.9432,-67.5898,0,-57.0538	1/2:80:0,30,50:0:0:30,50:1063,1758:-217.586,-132.465,-123.434,-85.4616,0,-70.4101	1/1:40:0,39,1:0:0:39,1:1367,36:-121.482,-11.7402,0,-118.544,-8.44293,-118.243	1/1:44:0,44,0:0:0:44,0:1529,0:-136.185,-13.2453,0,-136.185,-13.2453,-136.185	1/1:46:0,46,0:0:0:46,0:1611,0:-143.15,-13.8474,0,-143.15,-13.8474,-143.15	1/2:49:0,21,28:0:0:21,28:658,995:-125.859,-73.5131,-67.1914,-52.6626,0,-44.2338	1/1:82:0,82,0:0:0:82,0:2865,0:-250.976,-24.6845,0,-250.976,-24.6845,-250.976	1/1:81:0,81,0:0:0:81,0:2845,0:-250.905,-24.3834,0,-250.905,-24.3834,-250.905	1/1:56:0,56,0:0:0:56,0:1954,0:-124.507,-16.8577,0,-124.507,-16.8577,-124.507	1/2:74:0,16,58:0:0:16,58:556,2041:-198.805,-154.563,-149.747,-44.5793,0,-27.1196	1/1:98:0,98,0:0:0:98,0:3358,0:-297.421,-29.5009,0,-297.421,-29.5009,-297.421	1/2:58:0,17,41:0:0:17,41:599,1472:-157.263,-109.581,-104.464,-48.0219,0,-35.6797	1/1:219:0,218,1:0:0:218,1:7687,36:-560.421,-65.6245,0,-557.589,-62.4449,-557.288	1/2:170:0,58,112:0:0:58,112:2036,4015:-463.972,-300.832,-283.372,-163.482,0,-129.766	1/2:35:0,17,18:0:0:17,18:593,629:-94.1503,-47.1621,-42.0446,-47.32,0,-41.9015	1/2:189:0,94,95:0:0:94,95:3281,3381:-446.37,-259.191,-230.894,-187.475,0,-158.877	1/2:96:0,48,48:0:0:48,48:1687,1716:-263.25,-129.394,-114.945,-134.194,0,-119.744	1/2:71:0,22,48:0:0:22,48:742,1716:-188.611,-129.351,-122.728,-59.3785,0,-44.9291	1/2:4:0,2,2:0:0:2,2:66,72:-10.6571,-5.45443,-4.85237,-5.52322,0,-4.92116	1/1:8:0,8,0:0:0:8,0:283,0:-25.6491,-2.40824,0,-25.6491,-2.40824,-25.6491	1/1:3:0,3,0:0:0:3,0:108,0:-9.83748,-0.90309,0,-9.83748,-0.90309,-9.83748	.:.:.:.:.:.:.:.	1/2:3:0,2,1:0:0:2,1:71,36:-7.81488,-1.97784,-1.37578,-6.10667,0,-5.80564	1/1:293:0,291,1:0:0:291,1:10265,36:-730.825,-87.5997,0,-727.887,-84.6623,-727.586	1/2:76:0,33,43:0:0:33,43:1152,1525:-205.379,-113.259,-103.325,-92.4548,0,-79.5105	1/2:57:0,17,40:0:0:17,40:603,1436:-157.002,-108.865,-103.748,-48.4811,0,-36.4399	2/2:1:0,0,1:0:0:0,1:0,36:-3.18762,-3.18762,-3.18762,-0.30103,-0.30103,0	1/2:88:0,36,52:0:0:36,52:1272,1860:-238.146,-137.485,-126.648,-100.997,0,-85.3436	1/2:41:0,16,25:0:0:16,25:567,892:-111.646,-66.963,-62.1465,-45.0216,0,-37.4959	1/2:139:0,39,99:0:0:39,99:1362,3536:-370.961,-263.287,-251.546,-107.722,0,-77.9197	1/2:101:0,40,61:0:0:40,61:1393,2162:-275.385,-163.664,-151.623,-112.059,0,-93.6965	1/1:51:0,51,0:0:0:51,0:1781,0:-157.118,-15.3525,0,-157.118,-15.3525,-157.118	1/1:138:0,137,0:0:0:137,0:4803,0:-319.225,-41.2411,0,-319.225,-41.2411,-319.225	1/2:99:0,43,55:0:0:43,55:1508,1968:-268.108,-147.806,-134.861,-120.417,0,-103.861	1/1:87:0,85,1:0:0:85,1:2959,36:-262.057,-25.5876,0,-260.223,-23.7667,-259.922	1/2:93:0,20,73:0:0:20,73:702,2616:-252.053,-196.231,-190.211,-56.1625,0,-34.1873	1/2:91:0,29,62:0:0:29,62:1038,2219:-251.402,-168.371,-159.641,-83.3765,0,-64.7126	1/1:122:0,122,0:0:0:122,0:4276,0:-333.301,-36.7257,0,-333.301,-36.7257,-333.301	1/2:9:0,5,4:0:0:5,4:180,144:-25.7282,-11.1703,-9.66517,-14.9022,0,-13.6981	1/1:100:0,98,0:0:0:98,0:3429,0:-303.862,-29.5009,0,-303.862,-29.5009,-303.862	1/1:36:0,36,0:0:0:36,0:1269,0:-76.1117,-10.8371,0,-76.1117,-10.8371,-76.1117	1/1:2:0,2,0:0:0:2,0:65,0:-6.15374,-0.60206,0,-6.15374,-0.60206,-6.15374	1/1:41:0,41,0:0:0:41,0:1444,0:-128.025,-12.3422,0,-128.025,-12.3422,-128.025	1/1:40:0,40,0:0:0:40,0:1403,0:-124.301,-12.0412,0,-124.301,-12.0412,-124.301	1/1:5:0,5,0:0:0:5,0:179,0:-12.0228,-1.50515,0,-12.0228,-1.50515,-12.0228	1/1:14:0,14,0:0:0:14,0:484,0:-40.9192,-4.21442,0,-40.9192,-4.21442,-40.9192	1/2:49:0,8,41:0:0:8,41:281,1433:-130.11,-107.822,-105.413,-22.6279,0,-10.2857	1/1:71:0,71,0:0:0:71,0:2484,0:-220.028,-21.3731,0,-220.028,-21.3731,-220.028	1/2:9:0,2,7:0:0:2,7:71,252:-25.0815,-19.3387,-18.7367,-6.09124,0,-3.98403	1/2:127:0,59,68:0:0:59,68:2071,2436:-317.626,-186.608,-168.848,-131.325,0,-110.855	1/1:48:0,47,1:0:0:47,1:1620,36:-143.395,-14.1484,0,-140.728,-11.1504,-140.427	1/2:85:0,42,43:0:0:42,43:1477,1532:-231.351,-113.338,-100.695,-118.349,0,-105.405	1/2:58:0,27,31:0:0:27,31:941,1108:-158.299,-83.8326,-75.7048,-74.8031,0,-65.4711	1/1:58:0,57,1:0:0:57,1:1958,36:-173.332,-17.1587,0,-171.095,-14.6387,-170.794	1/1:65:0,65,0:0:0:65,0:2283,0:-201.997,-19.567,0,-201.997,-19.567,-201.997	1/1:14:0,14,0:0:0:14,0:494,0:-43.9006,-4.21442,0,-43.9006,-4.21442,-43.9006	1/1:42:0,42,0:0:0:42,0:1444,0:-128.467,-12.6433,0,-128.467,-12.6433,-128.467	1/1:83:0,83,0:0:0:83,0:2888,0:-217.373,-24.9855,0,-217.373,-24.9855,-217.373	1/2:24:0,5,19:0:0:5,19:172,675:-65.3987,-51.5762,-50.071,-14.1616,0,-8.442	1/1:25:0,25,0:0:0:25,0:872,0:-77.4641,-7.52575,0,-77.4641,-7.52575,-77.4641	1/2:68:0,12,56:0:0:12,56:424,1972:-178.065,-144.178,-140.566,-34.2291,0,-17.3714	1/1:23:0,22,0:0:0:22,0:774,0:-66.046,-6.62266,0,-66.046,-6.62266,-66.046	1/2:96:0,30,66:0:0:30,66:1077,2345:-261.549,-175.903,-166.873,-85.9897,0,-66.1217	1/2:63:0,17,46:0:0:17,46:592,1644:-168.565,-121.608,-116.49,-47.2936,0,-33.4462	1/1:55:0,55,0:0:0:55,0:1956,0:-173.876,-16.5567,0,-173.876,-16.5567,-173.876	1/1:9:0,9,0:0:0:9,0:308,0:-27.809,-2.70927,0,-27.809,-2.70927,-27.809	1/1:72:0,72,0:0:0:72,0:2535,0:-222.756,-21.6742,0,-222.756,-21.6742,-222.756	1/1:53:0,52,1:0:0:52,1:1826,36:-161.019,-15.6536,0,-158.151,-12.4336,-157.85	1/1:105:0,105,0:0:0:105,0:3703,0:-327.96,-31.6082,0,-327.96,-31.6082,-327.96	1/2:76:0,36,40:0:0:36,40:1265,1427:-209.593,-107.946,-97.109,-101.987,0,-89.9455	1/1:50:0,50,0:0:0:50,0:1755,0:-155.326,-15.0515,0,-155.326,-15.0515,-155.326	1/2:100:0,43,57:0:0:43,57:1511,2012:-276.218,-154.882,-141.938,-121.677,0,-104.518	1/2:150:0,58,91:0:0:58,91:2025,3237:-406.996,-245.576,-228.116,-161.44,0,-134.047	1/2:33:0,15,18:0:0:15,18:523,648:-91.0405,-49.055,-44.5395,-42.3253,0,-36.9068	1/2:87:0,34,53:0:0:34,53:1173,1887:-232.229,-139.326,-129.091,-93.236,0,-77.2814	1/2:87:0,31,56:0:0:31,56:1075,1980:-233.508,-147.418,-138.086,-86.4265,0,-69.5689	1/2:45:0,8,36:0:0:8,36:280,1291:-117.557,-95.7394,-93.3311,-21.8313,0,-10.9943	1/2:95:0,20,75:0:0:20,75:697,2666:-256.135,-200.501,-194.48,-55.9737,0,-33.3964	1/2:90:0,18,72:0:0:18,72:630,2550:-241.573,-192.427,-187.009,-49.4807,0,-27.8065	1/1:25:0,25,0:0:0:25,0:897,0:-79.7737,-7.52575,0,-79.7737,-7.52575,-79.7737	1/1:91:0,91,0:0:0:91,0:3165,0:-280.728,-27.3937,0,-280.728,-27.3937,-280.728
chr06	31609457	.	T	C	19740.3	PASS	AB=0.478244;ABP=13.5926;AC=46;AF=0.244681;AN=188;AO=1242;CIGAR=1X;DP=5625;DPB=5625;DPRA=1.11423;EPP=2699.98;EPPR=9514.06;GTI=0;LEN=1;MEANALT=1.0566;MQM=59.9501;MQMR=59.9744;NS=94;NUMALT=1;ODDS=2.70654;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43949;QR=155602;RO=4380;RPL=0;RPP=2699.98;RPPR=9505.38;RPR=1242;RUN=1;SAF=0;SAP=2699.98;SAR=1242;SRF=1;SRP=9505.38;SRR=4379;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:32,17:32:1136:17:591:-38.7648,0,-87.7984	0/1:45:28,17:28:987:17:603:-41.0538,0,-75.5967	0/1:80:44,36:44:1568:36:1259:-89.5271,0,-117.329	0/0:99:98,1:98:3483:1:36:0,-26.2037,-310.085	0/0:50:50,0:50:1771:0:0:0,-15.0515,-159.672	0/0:36:34,2:34:1224:2:72:0,-4.00036,-103.63	0/0:66:66,0:66:2334:0:0:0,-19.868,-210.319	0/1:53:25,28:25:872:28:977:-72.2856,0,-62.839	0/0:78:78,0:78:2761:0:0:0,-23.4803,-248.732	0/1:57:29,28:29:1032:28:985:-71.8028,0,-76.0348	0/1:36:22,14:22:784:14:500:-34.4991,0,-60.0468	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.211	0/0:67:67,0:67:2385:0:0:0,-20.169,-214.906	0/1:49:19,30:19:680:30:1055:-80.5096,0,-46.7787	0/1:62:37,25:37:1320:25:880:-60.8538,0,-100.438	0/0:56:56,0:56:1984:0:0:0,-16.8577,-178.835	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/1:30:14,16:14:491:16:568:-42.421,0,-35.4902	0/0:111:111,0:111:3882:0:0:0,-33.4143,-349.574	0/0:77:77,0:77:2709:0:0:0,-23.1793,-244.055	0/0:74:74,0:74:2613:0:0:0,-22.2762,-235.418	0/1:89:52,37:52:1849:37:1315:-91.8594,0,-139.896	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/1:75:41,34:41:1472:34:1211:-86.7183,0,-110.199	0/0:152:152,0:152:5415:0:0:0,-45.7566,-487.483	0/1:77:47,29:47:1654:29:1025:-69.3228,0,-125.906	0/1:19:5,14:5:180:14:495:-39.1635,0,-10.8325	0/1:123:48,75:48:1716:75:2645:-201.268,0,-117.699	0/1:66:47,19:47:1676:19:672:-40.9375,0,-131.259	0/1:54:40,14:40:1428:14:500:-29.0806,0,-112.562	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:186:185,1:185:6564:1:32:0,-52.7923,-587.648	0/1:87:48,39:48:1699:39:1396:-99.7495,0,-127.006	0/1:36:14,22:14:504:22:772:-58.9634,0,-34.861	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:139:76,62:76:2704:62:2203:-156.633,0,-201.703	0/1:23:12,11:12:428:11:388:-28.3337,0,-31.9351	0/1:76:43,33:43:1536:33:1157:-81.5559,0,-115.652	0/1:40:18,22:18:635:22:788:-59.2036,0,-45.4358	0/0:44:44,0:44:1559:0:0:0,-13.2453,-140.601	0/0:69:69,0:69:2453:0:0:0,-20.7711,-221.023	0/1:79:36,43:36:1292:43:1527:-113.942,0,-92.8024	0/0:89:88,1:88:3124:1:32:0,-23.5924,-278.151	0/1:58:36,22:36:1284:22:775:-52.6109,0,-98.4037	0/1:49:33,16:33:1171:16:576:-37.4245,0,-90.9462	0/0:74:74,0:74:2656:0:0:0,-22.2762,-238.096	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:130:130,0:130:4619:0:0:0,-39.1339,-415.877	0/0:52:52,0:52:1818:0:0:0,-15.6536,-163.897	0/0:14:14,0:14:481:0:0:0,-4.21442,-43.6151	0/0:83:83,0:83:2939:0:0:0,-24.9855,-264.743	0/0:21:21,0:21:736:0:0:0,-6.32163,-66.5339	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:49:23,26:23:828:26:928:-69.0878,0,-60.0936	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.873	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:99:37,62:37:1315:62:2201:-168.552,0,-88.8491	0/0:77:77,0:77:2745:0:0:0,-23.1793,-246.921	0/1:50:30,20:30:1064:20:716:-49.7162,0,-81.0202	0/1:35:19,16:19:680:16:563:-40.4631,0,-50.9931	0/0:105:104,1:104:3654:1:36:0,-28.0099,-325.466	0/0:127:125,2:125:4453:2:72:0,-31.3941,-394.104	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:34:34,0:34:1191:0:0:0,-10.235,-107.494	0/1:12:7,5:7:248:5:176:-12.5727,0,-19.0518	0/0:120:120,0:120:4265:0:0:0,-36.1236,-384.03	0/1:43:24,19:24:845:19:671:-47.7715,0,-63.4228	0/0:104:101,3:101:3600:3:108:0,-21.2319,-314.133	0/1:69:40,29:40:1432:29:1040:-73.1433,0,-108.407	0/1:82:46,36:46:1624:36:1288:-91.5391,0,-121.764	0/0:40:40,0:40:1401:0:0:0,-12.0412,-126.385	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.148	0/0:114:114,0:114:4072:0:0:0,-34.3174,-366.668	0/1:63:30,33:30:1080:33:1158:-85.5601,0,-78.5484	0/0:55:55,0:55:1943:0:0:0,-16.5566,-175.146	0/1:52:30,22:30:1072:22:772:-54.1477,0,-81.1389	0/1:101:40,61:40:1432:61:2159:-164.17,0,-98.7736	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	0/1:48:20,28:20:708:28:980:-73.8314,0,-49.5962	0/1:50:30,20:30:1080:20:707:-48.9031,0,-82.4618	0/1:47:21,26:21:748:26:917:-68.6962,0,-53.4969	0/1:95:59,35:59:2112:35:1244:-83.6081,0,-161.692	0/1:80:16,64:16:572:64:2246:-178.25,0,-27.731	0/0:22:22,0:22:769:0:0:0,-6.62266,-69.5286	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447
chr06	31693059	.	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chr06	31757416	.	A	C	27056.9	PASS	AB=0.514768;ABP=8.8467;AC=46;AF=0.244681;AN=188;AO=1593;CIGAR=1X;DP=6994;DPB=6994;DPRA=0.855959;EPP=3462.17;EPPR=11722.4;GTI=1;LEN=1;MEANALT=1.04082;MQM=59.6893;MQMR=59.7608;NS=94;NUMALT=1;ODDS=0.879387;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57125;QR=193263;RO=5397;RPL=0;RPP=3462.17;RPPR=11722.4;RPR=1593;RUN=1;SAF=1593;SAP=3462.17;SAR=0;SRF=5397;SRP=11722.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:82:36,46:36:1288:46:1648:-123.916,0,-91.5309	0/1:82:37,45:37:1328:45:1616:-121.037,0,-95.1378	0/0:184:183,0:183:6568:0:0:0,-55.0885,-590.789	0/0:70:69,1:69:2476:1:36:0,-17.4738,-219.472	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.481	0/0:115:115,0:115:4103:0:0:0,-34.6184,-369.451	0/1:153:77,76:77:2768:76:2720:-198.952,0,-203.27	0/0:78:76,2:76:2724:2:72:0,-16.6436,-238.555	0/1:72:40,32:40:1440:32:1152:-82.309,0,-108.224	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8453	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.004	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.018	0/1:24:11,13:11:396:13:468:-35.2303,0,-28.758	0/1:45:18,26:18:648:26:932:-70.6314,0,-45.0799	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.986	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.103	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.685	0/1:11:6,5:6:212:5:176:-12.6799,0,-16.1101	0/1:125:54,71:54:1928:71:2548:-191.931,0,-136.164	0/0:104:104,0:104:3732:0:0:0,-31.3071,-335.941	0/0:132:132,0:132:4713:0:0:0,-39.736,-424.264	0/1:33:21,12:21:756:12:432:-29.2826,0,-58.4332	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.823	0/1:65:20,45:20:720:45:1612:-125.803,0,-45.5536	0/0:250:250,0:250:8959:0:0:0,-75.2575,-806.262	0/1:167:86,81:86:3092:81:2901:-211.043,0,-228.227	0/1:12:4,8:4:144:8:288:-22.6504,0,-9.70126	0/1:245:104,141:104:3736:141:5028:-378.907,0,-262.642	0/1:162:88,74:88:3152:74:2652:-190.15,0,-235.111	0/1:121:65,56:65:2340:56:2008:-144.564,0,-174.434	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.661	0/0:195:195,0:195:6997:0:0:0,-58.7008,-629.392	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:128:67,61:67:2400:61:2188:-158.024,0,-177.72	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9289	0/1:122:57,65:57:2044:65:2336:-173.741,0,-147.457	0/1:56:34,22:34:1216:22:792:-54.7476,0,-92.8885	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.473	0/0:95:95,0:95:3392:0:0:0,-28.5978,-305.42	0/1:128:64,64:64:2292:64:2296:-168.358,0,-167.894	0/0:146:146,0:146:5240:0:0:0,-43.9504,-471.727	0/1:77:19,58:19:684:58:2080:-164.273,0,-38.7095	0/1:128:55,73:55:1976:73:2620:-197.513,0,-139.536	0/0:74:74,0:74:2633:0:0:0,-22.2762,-237.216	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/0:102:102,0:102:3644:0:0:0,-30.7051,-328.147	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8102	0/1:31:12,19:12:432:19:672:-51.4716,0,-29.5694	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.69	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:96:47,49:47:1684:49:1760:-129.78,0,-122.944	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.931	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.1992	0/0:134:134,0:134:4804:0:0:0,-40.338,-432.509	0/0:118:118,0:118:4228:0:0:0,-35.5215,-379.753	0/1:54:26,28:26:932:28:1004:-74.4156,0,-67.9432	0/1:51:30,21:30:1076:21:756:-53.0123,0,-81.7956	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.212	0/0:55:54,1:54:1932:1:36:0,-12.9584,-170.554	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.153	0/0:83:82,0:82:2917:0:0:0,-24.6845,-262.371	0/1:19:6,13:6:216:13:468:-36.7354,0,-14.0709	0/0:210:210,0:210:7509:0:0:0,-63.2163,-675.674	0/1:59:27,32:27:972:32:1148:-85.8563,0,-70.0338	0/0:135:135,0:135:4779:0:0:0,-40.639,-430.211	0/1:101:58,43:58:2061:43:1540:-108.489,0,-155.353	0/1:123:52,71:52:1872:71:2548:-192.478,0,-131.712	0/0:88:87,1:87:3105:1:36:0,-22.8924,-276.008	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:86:86,0:86:3031:0:0:0,-25.8886,-273.005	0/0:112:112,0:112:4001:0:0:0,-33.7154,-360.275	0/0:147:147,0:147:5276:0:0:0,-44.2514,-474.963	0/1:101:60,40:60:2160:40:1436:-99.0704,0,-164.195	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.083	0/1:46:29,17:29:1040:17:612:-41.5661,0,-80.067	0/1:95:54,41:54:1944:41:1476:-104.531,0,-146.625	0/1:40:23,17:23:828:17:612:-43.364,0,-62.7987	0/1:58:29,29:29:1040:29:1040:-76.4219,0,-76.4479	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:11:4,7:4:144:7:252:-19.7083,0,-10.0023	0/1:41:21,20:21:756:20:720:-52.7784,0,-56.025	0/1:45:16,29:16:576:29:1044:-80.7238,0,-38.6263	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.091
chr06	31757475	.	T	C	110076	PASS	AB=0.481201;ABP=12.3178;AC=142;AF=0.755319;AN=188;AO=5261;CIGAR=1X;DP=6846;DPB=6846;DPRA=36.7957;EPP=11418.4;EPPR=3433.94;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.7666;MQMR=59.7082;NS=94;NUMALT=1;ODDS=2.13696;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185916;QR=56319;RO=1580;RPL=5260;RPP=11418.4;RPPR=3433.94;RPR=1;RUN=1;SAF=5261;SAP=11427.1;SAR=0;SRF=1580;SRP=3433.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:6,1:6:208:1:36:-1.49107,0,-16.9519	0/1:81:45,36:45:1604:36:1275:-90.6526,0,-120.259	0/1:77:43,34:43:1544:34:1216:-86.5673,0,-116.066	1/1:179:0,179:0:0:179:6306:-567.5,-53.8844,0	1/1:70:1,69:1:36:69:2460:-218.034,-17.4738,0	1/1:67:0,67:0:0:67:2391:-215.439,-20.169,0	1/1:112:2,110:2:72:110:3834:-338.419,-26.8786,0	0/1:152:77,75:77:2759:75:2653:-193.233,0,-202.761	1/1:74:2,72:2:72:72:2556:-223.44,-15.4395,0	0/1:72:32,40:32:1144:40:1420:-106.423,0,-81.5884	0/1:15:9,6:9:320:6:216:-15.2727,0,-24.6269	1/1:55:0,55:0:0:55:1927:-173.688,-16.5567,0	1/1:52:0,52:0:0:52:1864:-168.036,-15.6536,0	0/1:24:13,11:13:464:11:387:-27.9412,0,-34.8709	0/1:46:28,18:28:991:18:626:-42.8124,0,-75.6088	1/1:32:0,32:0:0:32:1124:-101.465,-9.63296,0	1/1:41:0,41:0:0:41:1468:-132.379,-12.3422,0	1/1:49:0,49:0:0:49:1747:-157.502,-14.7505,0	0/1:9:3,6:3:108:6:216:-17.0778,0,-7.3659	0/1:124:71,52:71:2487:52:1843:-128.761,0,-186.683	1/1:106:0,105:0:0:105:3730:-335.393,-31.6082,0	1/1:131:1,130:1:36:130:4592:-409.785,-35.8367,0	0/1:34:13,21:13:464:21:733:-56.0546,0,-31.8579	1/1:29:0,28:0:0:28:981:-88.2339,-8.42884,0	0/1:64:44,20:44:1572:20:707:-44.6805,0,-122.506	1/1:242:0,242:0:0:242:8526:-767.318,-72.8493,0	0/1:167:81,86:81:2880:86:3023:-221.935,0,-209.157	0/1:12:8,4:8:275:4:144:-9.70126,0,-21.4665	0/1:243:141,102:141:5012:102:3588:-249.942,0,-378.044	0/1:155:72,83:72:2546:83:2932:-217.428,0,-182.592	0/1:119:55,64:55:1976:64:2265:-168.289,0,-142.287	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	1/1:14:0,14:0:0:14:494:-44.7926,-4.21442,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:129:0,129:0:0:129:4502:-405.345,-38.8329,0	1/1:188:0,188:0:0:188:6660:-599.468,-56.5936,0	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:130:61,69:61:2158:69:2425:-179.23,0,-154.852	0/1:8:2,6:2:72:6:201:-16.0081,0,-4.42848	0/1:120:63,57:63:2251:57:2013:-145.307,0,-166.711	0/1:55:22,33:22:792:33:1176:-89.5907,0,-55.0486	1/1:46:0,46:0:0:46:1631:-147.077,-13.8474,0	1/1:93:0,93:0:0:93:3312:-298.222,-27.9958,0	0/1:130:64,65:64:2292:65:2300:-167.951,0,-167.341	1/1:144:0,144:0:0:144:5116:-460.578,-43.3483,0	0/1:72:55,17:55:1960:17:608:-33.3779,0,-154.997	0/1:126:73,53:73:2620:53:1884:-131.903,0,-198.115	1/1:73:0,73:0:0:73:2594:-233.707,-21.9752,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:101:0,101:0:0:101:3547:-319.429,-30.404,0	1/1:16:0,16:0:0:16:572:-51.8102,-4.81648,0	0/1:28:18,10:18:644:10:360:-24.3155,0,-49.8536	1/1:66:0,66:0:0:66:2328:-209.779,-19.868,0	1/1:35:0,35:0:0:35:1230:-110.992,-10.5361,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	0/1:96:49,47:49:1756:47:1667:-121.413,0,-129.421	1/1:92:0,92:0:0:92:3233:-291.193,-27.6948,0	0/1:7:3,4:3:108:4:144:-11.1992,0,-7.96796	1/1:129:0,129:0:0:129:4555:-410.111,-38.8329,0	1/1:117:0,117:0:0:117:4159:-373.973,-35.2205,0	0/1:52:28,24:28:1004:24:864:-62.4208,0,-75.0177	0/1:50:21,29:21:752:29:1021:-77.1441,0,-52.9524	1/1:114:0,114:0:0:114:4037:-363.507,-34.3174,0	1/1:54:1,53:1:36:53:1873:-165.247,-12.6573,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:56:0,56:0:0:56:1989:-179.282,-16.8577,0	1/1:82:0,82:0:0:82:2872:-258.709,-24.6845,0	0/1:18:12,6:12:428:6:212:-14.0063,0,-33.4393	1/1:203:0,203:0:0:203:7110:-639.747,-61.1091,0	0/1:56:30,26:30:1056:26:923:-66.5257,0,-78.485	1/1:132:0,132:0:0:132:4711:-424.126,-39.736,0	0/1:101:43,58:43:1544:58:2058:-155.084,0,-108.849	0/1:119:70,49:70:2496:49:1708:-118.163,0,-189.015	1/1:81:1,80:1:36:80:2832:-251.352,-20.7852,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:84:0,84:0:0:84:2916:-262.669,-25.2865,0	1/1:108:0,108:0:0:108:3808:-342.915,-32.5112,0	1/1:143:0,143:0:0:143:5037:-453.47,-43.0473,0	0/1:103:41,62:41:1450:62:2215:-168.594,0,-99.7837	1/1:47:0,47:0:0:47:1651:-148.872,-14.1484,0	0/1:44:16,28:16:572:28:991:-76.2582,0,-38.5681	0/1:96:42,53:42:1499:53:1890:-141.407,0,-106.244	0/1:38:18,20:18:644:20:707:-52.5121,0,-46.8433	0/1:57:28,29:28:1004:29:1025:-75.3953,0,-73.4845	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7083	0/1:41:20,21:20:707:21:748:-55.3031,0,-51.6042	0/1:42:28,14:28:1008:14:504:-33.0525,0,-78.3885	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	1/1:69:0,69:0:0:69:2401:-216.344,-20.7711,0
chr06	31758594	.	T	G	77755	PASS	AB=0.491493;ABP=4.34028;AC=142;AF=0.755319;AN=188;AO=3670;CIGAR=1X;DP=4757;DPB=4757;DPRA=51.1398;EPP=7972.31;EPPR=2359.06;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9918;MQMR=59.9871;NS=94;NUMALT=1;ODDS=1.93826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131023;QR=38710;RO=1085;RPL=0;RPP=7972.31;RPPR=2359.06;RPR=3670;RUN=1;SAF=3670;SAP=7972.31;SAR=0;SRF=1085;SRP=2359.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:75:33,42:33:1188:42:1495:-112.267,0,-84.6513	0/1:48:20,28:20:712:28:996:-75.5054,0,-49.9572	1/1:109:0,109:0:0:109:3881:-349.485,-32.8123,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:26:0,26:0:0:26:925:-83.5678,-7.82678,0	1/1:92:0,92:0:0:92:3246:-292.351,-27.6948,0	0/1:61:31,30:31:1104:30:1080:-79.1504,0,-81.3078	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/1:78:41,37:41:1453:37:1316:-95.2615,0,-107.584	0/1:47:19,28:19:680:28:1004:-76.5275,0,-47.3808	1/1:44:0,44:0:0:44:1553:-140.06,-13.2453,0	1/1:66:0,66:0:0:66:2353:-212.028,-19.868,0	0/1:46:21,25:21:744:25:891:-66.6614,0,-53.4351	0/1:69:32,37:32:1152:37:1332:-99.4113,0,-83.2191	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:52:1,51:1:36:51:1820:-160.482,-12.0553,0	1/1:45:0,45:0:0:45:1601:-144.38,-13.5464,0	0/1:40:18,22:18:648:22:774:-57.939,0,-46.6107	0/1:51:34,17:34:1208:17:612:-40.0609,0,-93.6736	1/1:85:0,85:0:0:85:3017:-271.76,-25.5876,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:33:19,14:19:669:14:504:-35.7641,0,-50.6	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:19:11,8:11:388:8:288:-20.5478,0,-29.5378	1/1:169:3,166:3:104:166:5930:-524.103,-41.1713,0	0/1:87:40,47:40:1416:47:1680:-125.298,0,-101.548	0/1:27:16,11:16:568:11:396:-27.8549,0,-43.3241	0/1:61:38,23:38:1349:23:828:-56.4813,0,-103.345	0/1:54:26,28:26:913:28:1004:-74.4202,0,-66.2284	0/1:41:18,23:18:648:23:813:-61.1469,0,-46.3097	0/1:11:9,2:9:316:2:72:-3.52539,0,-25.4675	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:177:0,177:0:0:177:6349:-571.497,-53.2823,0	1/1:104:0,104:0:0:104:3708:-333.921,-31.3071,0	0/1:62:36,26:36:1288:26:928:-65.1744,0,-97.5597	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:45:26,19:26:932:19:680:-47.9828,0,-70.6525	0/1:29:15,14:15:540:14:489:-35.609,0,-40.2067	0/1:27:14,13:14:500:13:464:-33.9697,0,-37.2084	0/1:79:32,47:32:1140:47:1688:-128.426,0,-79.1278	1/1:63:0,63:0:0:63:2234:-201.321,-18.9649,0	1/1:42:0,42:0:0:42:1483:-133.761,-12.6433,0	0/1:40:24,16:24:849:16:572:-39.7722,0,-64.6866	1/1:105:0,105:0:0:105:3762:-338.775,-31.6082,0	0/1:67:31,36:31:1112:36:1288:-96.054,0,-80.2223	0/1:79:50,29:50:1792:29:1040:-70.133,0,-137.781	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:23:8,15:8:288:15:521:-40.2926,0,-19.3437	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:15:0,15:0:0:15:532:-48.2125,-4.51545,0	1/1:6:0,6:0:0:6:216:-19.7896,-1.80618,0	0/1:28:15,13:15:525:13:468:-34.0308,0,-39.1492	1/1:83:0,83:0:0:83:2984:-268.791,-24.9855,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:97:0,97:0:0:97:3472:-312.692,-29.1999,0	1/1:97:4,93:4:140:93:3336:-287.512,-16.2553,0	0/1:37:13,24:13:464:24:860:-66.5837,0,-30.9594	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	1/1:125:2,123:2:72:123:4380:-387.538,-30.792,0	1/1:60:0,60:0:0:60:2135:-192.416,-18.0618,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:77:0,77:0:0:77:2734:-246.3,-23.1793,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:62:31,30:31:1100:30:1066:-77.5292,0,-80.5797	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:63:28,35:28:1008:35:1256:-94.3804,0,-72.0715	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:94:0,94:0:0:94:3330:-299.917,-28.2968,0	0/1:92:44,47:44:1568:47:1679:-123.643,0,-113.658	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:89:47,42:47:1688:42:1508:-109.223,0,-125.415	0/1:139:76,63:76:2724:63:2237:-159.749,0,-203.56	0/1:26:11,15:11:392:15:540:-41.1098,0,-27.7933	0/1:63:31,32:31:1108:32:1152:-85.0253,0,-81.0661	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:30:13,17:13:464:17:612:-46.381,0,-33.0666	0/1:81:39,42:39:1388:42:1504:-111.271,0,-100.835	0/1:56:38,18:38:1360:18:648:-41.7942,0,-105.843	1/1:51:0,51:0:0:51:1803:-162.549,-15.3525,0	1/1:107:0,107:0:0:107:3790:-341.299,-32.2102,0
chr06	31823383	.	TAT	AAC,TAC	115954	PASS	AB=0.508325,0.487258;ABP=4.78186,7.16067;AC=140,48;AF=0.744681,0.255319;AN=188;AO=4225,1451;CIGAR=1X1M1X,2M1X;DP=5710;DPB=6643.33;DPRA=61.3871,1.27134;EPP=9168.8,3153.82;EPPR=7.35324;GTI=2;LEN=3,1;MEANALT=1.89247,2.24561;MQM=59.907,59.9807;MQMR=60;NS=94;NUMALT=2;ODDS=0.214466;PAIRED=0,0;PAIREDR=0;PAO=2800,0;PQA=76115,0;PQR=0;PRO=0;QA=145295,51275;QR=70;RO=2;RPL=1,1;RPP=9168.8,3145.14;RPPR=3.0103;RPR=4224,1450;RUN=1,1;SAF=0,1;SAP=9177.48,3145.14;SAR=4225,1450;SRF=1;SRP=3.0103;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,16,8:0:0:16,8:539,276:-66.4371,-22.767,-17.9505,-44.0123,0,-41.6041	1/2:61:0,29,32:0:0:29,32:987,1140:-173.332,-93.2762,-84.5464,-80.4032,0,-70.7702	1/2:159:0,82,76:0:0:82,76:2831,2701:-450.168,-220.174,-195.489,-230.063,0,-207.185	1/1:109:0,109,0:0:0:109,0:3725,0:-335.093,-32.8123,0,-335.093,-32.8123,-335.093	1/1:26:0,26,0:0:0:26,0:878,0:-79.3235,-7.82678,0,-79.3235,-7.82678,-79.3235	1/1:31:0,30,1:0:0:30,1:1048,36:-94.2691,-9.0309,0,-91.3313,-5.73366,-91.0303	1/1:55:0,55,0:0:0:55,0:1903,0:-171.191,-16.5567,0,-171.191,-16.5567,-171.191	1/2:57:0,23,34:0:0:23,34:784,1220:-163.473,-99.8718,-92.9481,-63.9495,0,-53.7145	1/1:59:0,56,3:0:0:56,3:1899,108:-170.786,-16.8577,0,-161.972,-7.6856,-161.069	1/2:76:0,32,44:0:0:32,44:1124,1566:-219.11,-127.629,-117.996,-91.4803,0,-78.235	1/2:70:0,35,35:0:0:35,35:1205,1256:-200.319,-102.454,-91.9181,-97.8648,0,-87.3287	1/1:78:0,78,0:0:0:78,0:2693,0:-242.596,-23.4803,0,-242.596,-23.4803,-242.596	1/1:66:0,66,0:0:0:66,0:2235,0:-201.408,-19.868,0,-201.408,-19.868,-201.408	1/2:76:0,43,33:0:0:43,33:1442,1166:-212.092,-95.3129,-82.3686,-117.124,0,-107.19	1/2:46:0,20,26:0:0:20,26:720,920:-133.684,-74.9343,-68.9137,-58.7489,0,-50.9221	1/1:64:0,62,1:0:0:62,1:2148,36:-193.227,-18.6639,0,-190.29,-15.7264,-189.989	1/1:42:0,41,0:0:0:41,0:1400,0:-125.93,-12.3422,0,-125.93,-12.3422,-125.93	1/1:29:0,28,0:0:0:28,0:961,0:-86.4858,-8.42884,0,-86.4858,-8.42884,-86.4858	1/2:42:0,16,26:0:0:16,26:550,916:-119.583,-74.9297,-70.1132,-44.9999,0,-37.1731	1/2:91:0,54,37:0:0:54,37:1886,1319:-260.925,-107.518,-91.2624,-153.407,0,-142.269	1/1:85:0,84,0:0:0:84,0:2837,0:-255.229,-25.2865,0,-255.229,-25.2865,-255.229	1/1:54:0,53,0:0:0:53,0:1843,0:-165.872,-15.9546,0,-165.872,-15.9546,-165.872	1/2:32:0,16,16:0:0:16,16:552,556:-90.0398,-45.1984,-40.3819,-44.8368,0,-40.0203	1/1:15:0,15,0:0:0:15,0:501,0:-45.0509,-4.51545,0,-45.0509,-4.51545,-45.0509	1/2:38:0,12,26:0:0:12,26:419,927:-110,-75.9206,-72.3082,-34.4307,0,-26.6039	1/1:130:0,129,1:0:0:129,1:4493,36:-404.244,-38.8329,0,-401.306,-35.8949,-401.005	1/2:135:0,58,77:0:0:58,77:2015,2719:-385.584,-221.773,-204.313,-164.161,0,-140.982	1/2:25:0,15,10:0:0:15,10:529,352:-72.0815,-29.0079,-24.4924,-43.4257,0,-40.4154	1/2:203:0,101,101:0:0:101,101:3440,3579:-570.767,-291.679,-261.275,-279.189,0,-248.785	1/2:61:0,29,32:0:0:29,32:996,1130:-173.242,-92.374,-83.6441,-81.2162,0,-71.5832	1/2:63:0,33,30:0:0:33,30:1139,1076:-180.29,-87.7635,-77.8295,-92.5242,0,-83.4933	1/2:11:0,2,9:0:0:2,9:63,320:-31.4919,-26.4331,-25.831,-5.38109,0,-2.67182	1/1:8:0,8,0:0:0:8,0:284,0:-25.9036,-2.40824,0,-25.9036,-2.40824,-25.9036	1/1:9:0,9,0:0:0:9,0:322,0:-29.3242,-2.70927,0,-29.3242,-2.70927,-29.3242	1/1:6:0,6,0:0:0:6,0:203,0:-18.6015,-1.80618,0,-18.6015,-1.80618,-18.6015	1/1:12:0,12,0:0:0:12,0:413,0:-37.4988,-3.61236,0,-37.4988,-3.61236,-37.4988	1/2:138:0,74,62:0:0:74,62:2527,2161:-380.863,-175.782,-153.506,-205.099,0,-186.435	1/1:38:0,37,0:0:0:37,0:1270,0:-114.341,-11.1381,0,-114.341,-11.1381,-114.341	1/2:55:0,22,33:0:0:22,33:774,1172:-158.859,-95.8535,-89.2308,-63.3588,0,-53.4249	1/2:3:0,2,1:0:0:2,1:70,36:-8.98601,-3.29724,-2.69518,-6.04527,0,-5.74424	1/2:77:0,37,38:0:0:37,38:1297,1314:-212.298,-106.757,-95.6187,-105.531,0,-94.0916	1/2:40:0,16,24:0:0:16,24:533,852:-112.547,-69.4184,-64.6019,-43.1144,0,-35.8897	1/2:81:0,50,30:0:0:50,30:1712,1076:-226.715,-87.7622,-72.7107,-138.945,0,-129.914	1/2:55:0,33,21:0:0:33,21:1137,744:-152.956,-60.6069,-50.6729,-92.3471,0,-86.0254	1/1:42:1,41,0:1:36:41,0:1410,0:-123.606,-9.40476,0,-123.907,-12.3422,-126.845	1/1:38:0,38,0:0:0:38,0:1309,0:-117.81,-11.4391,0,-117.81,-11.4391,-117.81	1/2:37:0,17,20:0:0:17,20:581,707:-105.08,-57.934,-52.8165,-47.4926,0,-41.472	1/1:106:0,104,2:0:0:104,2:3604,72:-324.218,-31.3071,0,-318.343,-25.4322,-317.741	1/2:34:0,14,20:0:0:14,20:485,716:-97.8052,-58.3906,-54.1762,-39.4138,0,-33.3932	1/2:114:0,55,59:0:0:55,59:1925,2090:-326.83,-170.25,-153.694,-156.577,0,-138.816	1/1:76:0,76,0:0:0:76,0:2617,0:-235.512,-22.8783,0,-235.512,-22.8783,-235.512	1/2:6:0,4,2:0:0:4,2:136,72:-16.8958,-5.87483,-4.67071,-11.0177,0,-10.4156	1/1:63:0,63,0:0:0:63,0:2171,0:-195.652,-18.9649,0,-195.652,-18.9649,-195.652	1/1:56:0,56,0:0:0:56,0:1943,0:-174.891,-16.8577,0,-174.891,-16.8577,-174.891	1/2:6:0,5,1:0:0:5,1:171,32:-16.795,-2.89828,-1.39313,-14.2203,0,-13.9193	1/1:86:0,86,0:0:0:86,0:2993,0:-269.601,-25.8886,0,-269.601,-25.8886,-269.601	1/1:4:0,4,0:0:0:4,0:142,0:-12.7727,-1.20412,0,-12.7727,-1.20412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chr06	31830786	.	G	T	164678	PASS	AB=0.503625;ABP=3.56138;AC=141;AF=0.75;AN=188;AO=7812;CIGAR=1X;DP=10236;DPB=10236;DPRA=44.4826;EPP=16966.6;EPPR=5255.8;GTI=0;LEN=1;MEANALT=1.04348;MQM=59.9913;MQMR=60;NS=94;NUMALT=1;ODDS=1.13985;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278784;QR=86233;RO=2419;RPL=7812;RPP=16966.6;RPPR=5255.8;RPR=0;RUN=1;SAF=7812;SAP=16966.6;SAR=0;SRF=2419;SRP=5255.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:30,31:30:1068:31:1100:-80.9475,0,-78.0692	0/1:173:75,98:75:2683:98:3497:-262.862,0,-189.636	0/1:172:85,87:85:3044:87:3107:-228.072,0,-222.413	1/1:224:1,223:1:36:223:7966:-713.366,-63.8324,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:196:0,196:0:0:196:6959:-626.378,-59.0019,0	0/1:180:67,113:67:2339:113:4035:-309.153,0,-156.578	1/1:104:0,104:0:0:104:3695:-332.752,-31.3071,0	0/1:104:43,60:43:1535:60:2149:-162.35,0,-107.115	0/1:43:15,28:15:540:28:992:-76.6501,0,-35.9922	1/1:71:0,71:0:0:71:2535:-228.401,-21.3731,0	1/1:61:0,61:0:0:61:2162:-194.846,-18.3628,0	0/1:48:27,21:27:968:21:756:-53.9178,0,-72.9879	0/1:59:30,29:30:1072:29:1040:-76.1536,0,-79.0317	1/1:46:0,46:0:0:46:1611:-145.264,-13.8474,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:48:22,26:22:773:26:932:-69.7494,0,-55.44	0/1:259:159,100:159:5638:100:3588:-245.159,0,-429.574	1/1:163:0,163:0:0:163:5840:-525.712,-49.0679,0	1/1:106:0,106:0:0:106:3770:-339.497,-31.9092,0	0/1:95:40,55:40:1436:55:1950:-147.174,0,-100.94	1/1:161:1,160:1:32:160:5708:-510.641,-45.2665,0	0/1:122:72,50:72:2571:50:1792:-124.837,0,-194.914	1/1:381:4,376:4:140:376:13407:-1193.48,-101.805,0	0/1:234:123,111:123:4367:111:3953:-285.52,0,-322.764	0/1:50:28,22:28:1004:22:779:-55.3806,0,-75.6244	0/1:401:198,203:198:7108:203:7243:-531.213,0,-519.063	0/1:130:61,69:61:2154:69:2476:-183.96,0,-154.99	0/1:119:68,51:68:2425:51:1820:-128.259,0,-182.682	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:200:102,98:102:3645:98:3473:-252.574,0,-268.047	1/1:252:0,252:0:0:252:8971:-807.37,-75.8596,0	0/1:59:25,34:25:900:34:1215:-91.895,0,-63.5602	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:179:84,95:84:3012:95:3377:-250.261,0,-217.426	0/1:41:22,19:22:779:19:681:-49.2773,0,-58.0898	0/1:182:96,86:96:3414:86:3063:-221.111,0,-252.687	0/1:67:37,30:37:1324:30:1076:-76.9838,0,-99.2931	1/1:72:0,72:0:0:72:2559:-230.56,-21.6742,0	1/1:119:0,119:0:0:119:4262:-383.758,-35.8226,0	0/1:139:61,78:61:2179:78:2773:-207.967,0,-154.532	1/1:173:1,171:1:36:171:6109:-546.386,-48.4638,0	0/1:164:80,82:80:2863:82:2937:-215.51,0,-208.853	0/1:150:75,75:75:2688:75:2696:-197.712,0,-197.01	1/1:159:0,159:0:0:159:5640:-507.725,-47.8638,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	1/1:224:2,222:2:72:222:7914:-705.448,-60.594,0	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:140:1,139:1:36:139:4935:-440.703,-38.5459,0	1/1:86:0,86:0:0:86:3075:-276.978,-25.8886,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:27:0,27:0:0:27:963:-86.9859,-8.12781,0	0/1:61:35,26:35:1241:26:928:-65.4749,0,-93.6297	1/1:86:1,85:1:36:85:3044:-270.591,-22.2903,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:239:0,239:0:0:239:8511:-765.989,-71.9462,0	1/1:142:0,142:0:0:142:5095:-458.691,-42.7463,0	0/1:78:40,38:40:1417:38:1356:-98.8601,0,-104.345	0/1:85:36,49:36:1279:49:1760:-133.096,0,-89.8249	1/1:184:1,183:1:36:183:6486:-580.231,-51.7912,0	1/1:139:2,137:2:72:137:4882:-432.695,-35.0064,0	1/1:17:0,17:0:0:17:603:-54.5995,-5.11751,0	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	1/1:189:1,188:1:36:188:6710:-600.379,-53.2964,0	0/1:88:32,56:32:1139:56:2012:-154.862,0,-76.3277	1/1:125:0,125:0:0:125:4476:-403.009,-37.6288,0	0/1:252:134,118:134:4804:118:4185:-300.97,0,-356.655	0/1:131:67,64:67:2380:64:2287:-166.656,0,-175.024	1/1:105:0,105:0:0:105:3750:-337.699,-31.6082,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:173:4,169:4:144:169:6044:-530.749,-38.7646,0	1/1:118:1,117:1:36:117:4183:-373.053,-31.9233,0	1/1:271:0,271:0:0:271:9741:-876.632,-81.5791,0	0/1:110:49,61:49:1752:61:2175:-162.903,0,-124.851	1/1:60:0,60:0:0:60:2151:-193.857,-18.0618,0	0/1:90:42,48:42:1496:48:1711:-127.182,0,-107.842	0/1:144:74,70:74:2629:70:2495:-181.454,0,-193.508	0/1:59:30,29:30:1076:29:1036:-75.7931,0,-79.3921	0/1:82:38,44:38:1321:44:1576:-117.447,0,-94.5003	1/1:66:0,66:0:0:66:2355:-212.208,-19.868,0	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	0/1:68:27,41:27:972:41:1467:-111.855,0,-67.3279	0/1:50:35,15:35:1234:15:536:-33.5233,0,-96.3112	1/1:195:1,194:1:36:194:6897:-617.196,-55.1026,0	1/1:117:0,117:0:0:117:4184:-376.742,-35.2205,0
chr06	31924916	.	C	A	71744.9	PASS	AB=0.504342;ABP=3.97199;AC=49;AF=0.260638;AN=188;AO=2994;CIGAR=1X;DP=12403;DPB=12403;DPRA=1.10328;EPP=1878.33;EPPR=5830.06;GTI=2;LEN=1;MEANALT=1.0339;MQM=59.9773;MQMR=59.9933;NS=94;NUMALT=1;ODDS=7.64754;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104407;QR=329924;RO=9406;RPL=2112;RPP=1100.28;RPPR=4994.79;RPR=882;RUN=1;SAF=1419;SAP=20.6606;SAR=1575;SRF=4837;SRP=19.5916;SRR=4569;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:87:38,49:38:1340:49:1703:-127.362,0,-94.7104	0/1:109:59,50:59:2065:50:1770:-126.769,0,-153.305	0/1:226:120,106:120:4210:106:3695:-264.723,0,-311.053	0/0:257:257,0:257:8985:0:0:0,-77.3647,-808.644	0/0:92:92,0:92:3210:0:0:0,-27.6948,-289.123	0/0:73:73,0:73:2579:0:0:0,-21.9752,-232.346	0/0:107:106,1:106:3724:1:36:0,-28.6119,-331.767	0/1:147:61,86:61:2184:86:3034:-229.038,0,-152.575	0/0:207:207,0:207:7240:0:0:0,-62.3132,-651.667	0/1:127:53,74:53:1834:74:2575:-193.768,0,-127.103	0/1:100:55,45:55:1940:45:1540:-108.782,0,-144.771	0/0:234:234,0:234:8201:0:0:0,-70.441,-738.118	0/0:199:199,0:199:7071:0:0:0,-59.905,-636.454	0/1:144:59,85:59:2059:85:2948:-222.207,0,-142.233	0/1:143:72,71:72:2554:71:2449:-177.618,0,-187.063	0/0:140:140,0:140:4911:0:0:0,-42.1442,-442.147	0/0:109:109,0:109:3815:0:0:0,-32.8123,-342.993	0/0:113:113,0:113:3978:0:0:0,-34.0164,-358.211	0/1:52:19,33:19:680:33:1158:-88.8715,0,-45.8756	0/1:163:86,77:86:2989:77:2638:-188.602,0,-220.173	0/0:237:236,1:236:8287:1:36:0,-67.7458,-742.253	0/0:100:100,0:100:3430:0:0:0,-30.103,-308.912	0/1:176:91,85:91:3222:85:2990:-216.353,0,-237.222	0/0:126:126,0:126:4425:0:0:0,-37.9298,-398.426	0/1:71:34,37:34:1184:37:1312:-97.0085,0,-85.4885	0/0:287:286,1:286:10029:1:32:0,-83.1963,-899.361	0/1:253:127,126:127:4417:126:4379:-318.129,0,-321.546	0/1:86:40,46:40:1436:46:1624:-120.56,0,-103.649	0/1:171:77,93:77:2651:93:3197:-236.423,0,-187.299	0/1:145:59,86:59:2096:86:3004:-226.942,0,-145.261	0/1:159:91,68:91:3244:68:2352:-164.076,0,-244.319	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2579	0/1:319:156,163:156:5449:163:5638:-411.529,0,-394.519	0/0:94:92,2:92:3204:2:72:0,-21.4601,-281.746	0/1:102:55,47:55:1937:47:1627:-116.01,0,-143.9	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/1:156:84,72:84:2981:72:2488:-177.211,0,-221.561	0/1:49:26,23:26:915:23:819:-59.2811,0,-67.9151	0/1:291:133,158:133:4723:158:5490:-406.323,0,-337.63	0/1:131:66,65:66:2300:65:2286:-166.567,0,-167.826	0/0:141:141,0:141:4946:0:0:0,-42.4452,-445.292	0/0:151:151,0:151:5277:0:0:0,-45.4555,-475.074	0/1:160:89,71:89:3093:71:2461:-173.581,0,-230.435	0/0:184:183,1:183:6432:1:36:0,-51.7912,-575.377	0/1:76:42,34:42:1451:34:1138:-79.8369,0,-108.002	0/1:159:86,73:86:3043:73:2575:-184.134,0,-226.235	0/0:96:95,1:95:3372:1:36:0,-25.3006,-300.097	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:139:139,0:139:4860:0:0:0,-41.8432,-437.556	0/1:65:27,38:27:935:38:1289:-96.7366,0,-64.8924	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/0:134:133,1:133:4653:1:32:0,-37.1387,-415.738	0/0:83:83,0:83:2891:0:0:0,-24.9855,-260.425	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:14:14,0:14:474:0:0:0,-4.21442,-42.9822	0/1:120:51,69:51:1810:69:2382:-178.514,0,-127.057	0/0:169:167,2:167:5866:2:72:0,-44.0373,-521.222	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:196:196,0:196:6860:0:0:0,-59.0019,-617.48	0/0:275:270,5:270:9495:5:176:0,-66.5982,-838.335	0/1:81:51,30:51:1820:30:1056:-70.9674,0,-139.698	0/1:125:72,53:72:2492:53:1854:-129.509,0,-186.903	0/0:236:234,2:234:8195:2:72:0,-64.2064,-730.736	0/0:178:173,5:173:6055:5:176:0,-37.3983,-528.875	0/0:91:90,0:90:3172:0:0:0,-27.0927,-285.494	0/0:103:103,0:103:3665:0:0:0,-31.0061,-330.054	0/0:80:80,0:80:2789:0:0:0,-24.0824,-251.251	0/1:24:8,16:8:269:16:548:-42.4193,0,-17.3114	0/0:91:91,0:91:3186:0:0:0,-27.3937,-286.966	0/1:150:84,66:84:2946:66:2301:-162.161,0,-220.22	0/0:282:282,0:282:9957:0:0:0,-84.8905,-896.083	0/1:158:94,64:94:3325:64:2260:-156.101,0,-251.906	0/1:246:102,144:102:3579:144:5061:-381.584,0,-248.267	0/0:188:186,2:186:6512:2:72:0,-49.7569,-579.339	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:154:154,0:154:5345:0:0:0,-46.3586,-481.189	0/0:121:121,0:121:4211:0:0:0,-36.4246,-379.178	0/0:157:157,0:157:5508:0:0:0,-47.2617,-495.852	0/1:98:53,45:53:1858:45:1574:-112.448,0,-137.995	0/0:160:160,0:160:5563:0:0:0,-48.1648,-500.803	0/1:144:80,63:80:2791:63:2187:-153.687,0,-208.022	0/1:257:146,111:146:5126:111:3888:-272.751,0,-384.123	0/1:42:23,19:23:824:19:666:-47.6203,0,-61.8401	0/1:148:73,75:73:2525:75:2649:-194.099,0,-182.947	0/0:154:154,0:154:5389:0:0:0,-46.3586,-485.146	0/1:108:51,57:51:1756:57:1977:-145.69,0,-125.807	0/1:122:56,66:56:1980:66:2360:-175.933,0,-141.749	0/1:172:57,115:57:2016:115:4053:-313.184,0,-129.934	0/0:241:241,0:241:8452:0:0:0,-72.5482,-760.695	0/0:265:265,0:265:9292:0:0:0,-79.7729,-836.266
chr06	32003766	.	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chr06	32009326	.	C	T	28724.5	PASS	AB=0.502214;ABP=3.15455;AC=47;AF=0.25;AN=188;AO=1723;CIGAR=1X;DP=6681;DPB=6681;DPRA=1.21239;EPP=3744.46;EPPR=10762.7;GTI=0;LEN=1;MEANALT=1.01695;MQM=59.9861;MQMR=59.9927;NS=94;NUMALT=1;ODDS=4.49909;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61729;QR=177039;RO=4955;RPL=0;RPP=3744.46;RPPR=10762.7;RPR=1723;RUN=1;SAF=1723;SAP=3744.46;SAR=0;SRF=4955;SRP=10762.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:24,27:24:860:27:968:-72.0848,0,-62.3693	0/1:41:20,21:20:711:21:748:-55.3025,0,-51.9734	0/1:257:100,157:100:3563:157:5636:-429.977,0,-243.514	0/0:161:161,0:161:5756:0:0:0,-48.4658,-518.157	0/0:85:83,2:83:2976:2:68:0,-19.1298,-261.615	0/0:53:52,1:52:1864:1:36:0,-12.3563,-164.441	0/0:66:64,2:64:2280:2:72:0,-13.0313,-198.626	0/1:112:61,51:61:2184:51:1836:-131.805,0,-163.111	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:96:41,55:41:1464:55:1962:-147.955,0,-103.157	0/1:64:32,32:32:1139:32:1147:-84.2737,0,-83.5525	0/0:132:132,0:132:4706:0:0:0,-39.736,-423.701	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/1:30:8,22:8:288:22:788:-62.2077,0,-17.2365	0/1:63:27,36:27:964:36:1296:-97.979,0,-68.1119	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:36:15,21:15:540:21:752:-57.1646,0,-38.0995	0/1:90:47,43:47:1688:43:1548:-112.52,0,-125.114	0/0:81:80,1:80:2848:1:36:0,-20.7852,-252.961	0/0:114:114,0:114:4088:0:0:0,-34.3174,-368.105	0/1:43:28,15:28:1008:15:535:-35.5403,0,-78.0921	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:86:30,56:30:1068:56:2016:-155.824,0,-70.5435	0/0:140:139,1:139:4956:1:36:0,-38.5459,-442.594	0/1:173:96,77:96:3405:77:2760:-196.563,0,-254.587	0/1:28:13,15:13:468:15:536:-40.146,0,-34.0308	0/1:164:80,84:80:2848:84:2997:-220.592,0,-207.19	0/1:75:52,23:52:1848:23:824:-51.9061,0,-144.023	0/1:55:22,33:22:780:33:1184:-90.3117,0,-53.9664	0/1:24:20,4:20:712:4:144:-6.0889,0,-57.1819	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:24:24,0:24:841:0:0:0,-7.22472,-76.0064	0/1:142:88,54:88:3144:54:1927:-130.96,0,-240.44	0/0:95:94,0:94:3360:0:0:0,-28.2968,-302.257	0/1:57:30,27:30:1068:27:972:-70.6392,0,-79.2734	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:94:48,46:48:1712:46:1638:-119.411,0,-126.069	0/1:31:18,13:18:644:13:468:-33.1277,0,-48.9587	0/1:162:72,90:72:2579:90:3224:-241.615,0,-183.592	0/1:49:26,23:26:932:23:824:-59.7328,0,-69.4484	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/1:115:56,59:56:2000:59:2112:-155.731,0,-145.655	0/0:103:103,0:103:3653:0:0:0,-31.0061,-328.975	0/1:64:27,37:27:968:37:1328:-100.556,0,-68.1714	0/1:78:48,30:48:1724:30:1080:-74.0329,0,-131.965	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:17:13,4:13:468:4:144:-8.19611,0,-37.3421	0/0:97:97,0:97:3464:0:0:0,-29.1999,-311.971	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:39:23,16:23:824:16:557:-38.7163,0,-62.7431	0/0:73:72,1:72:2571:1:32:0,-18.7759,-228.44	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:148:147,1:147:5264:1:36:0,-40.9542,-470.298	0/0:133:126,6:126:4496:6:216:0,-20.3053,-384.393	0/1:52:31,21:31:1112:21:756:-52.7137,0,-84.7378	0/1:82:35,47:35:1260:47:1672:-126.083,0,-89.021	0/0:101:98,3:98:3500:3:108:0,-20.3289,-305.136	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.513	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.371	0/0:58:58,0:58:2060:0:0:0,-17.4597,-185.672	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:30:20,10:20:708:10:360:-23.7134,0,-55.0147	0/0:114:113,0:113:4023:0:0:0,-34.0164,-362.049	0/1:50:20,30:20:712:30:1080:-82.4618,0,-49.3552	0/0:107:107,0:107:3816:0:0:0,-32.2102,-343.639	0/1:128:64,64:64:2296:64:2281:-167.018,0,-168.369	0/1:196:71,125:71:2548:125:4484:-344.726,0,-170.568	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/0:75:73,2:73:2608:2:72:0,-15.7405,-228.132	0/0:102:102,0:102:3640:0:0:0,-30.7051,-327.804	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/1:42:17,25:17:612:25:892:-67.9564,0,-42.7702	0/0:49:48,1:48:1712:1:36:0,-11.1522,-150.767	0/1:40:27,13:27:972:13:468:-30.4184,0,-75.7567	0/1:106:58,48:58:2076:48:1728:-123.896,0,-155.201	0/1:26:15,11:15:519:11:396:-28.156,0,-39.2099	0/1:55:33,22:33:1184:22:792:-55.049,0,-90.3117	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/1:50:30,20:30:1080:20:720:-50.0773,0,-82.4618	0/1:95:47,48:47:1683:48:1717:-126.217,0,-123.158	0/1:51:25,26:25:892:26:932:-68.8463,0,-65.2472	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:95:94,1:94:3363:1:36:0,-24.9996,-299.288
chr06	32009331	.	C	T	103181	PASS	AB=0.493464;ABP=4.25925;AC=141;AF=0.75;AN=188;AO=4939;CIGAR=1X;DP=6664;DPB=6664;DPRA=0;EPP=10727.9;EPPR=3744.46;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9933;MQMR=59.9901;NS=94;NUMALT=1;ODDS=4.91013;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176491;QR=61536;RO=1723;RPL=0;RPP=10727.9;RPPR=3744.46;RPR=4939;RUN=1;SAF=4939;SAP=10727.9;SAR=0;SRF=1723;SRP=3744.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:27,24:27:972:24:856:-62.0086,0,-72.4454	0/1:39:21,18:21:752:18:640:-46.1891,0,-56.2661	0/1:254:153,101:153:5446:101:3624:-249.903,0,-413.8	1/1:162:0,162:0:0:162:5783:-520.585,-48.7669,0	1/1:86:2,84:2:68:84:3003:-264.043,-19.4309,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:66:2,64:2:72:64:2273:-197.994,-13.0313,0	0/1:114:51,63:51:1832:63:2260:-169.345,0,-130.843	1/1:40:0,40:0:0:40:1417:-127.825,-12.0412,0	0/1:98:56,42:56:1995:42:1504:-106.154,0,-150.322	0/1:61:32,29:32:1148:29:1040:-75.5515,0,-85.267	1/1:136:0,136:0:0:136:4867:-438.183,-40.9401,0	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	0/1:30:21,9:21:756:9:319:-20.0205,0,-59.3363	0/1:63:37,26:37:1315:26:928:-64.8734,0,-99.6861	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:37:20,17:20:711:17:612:-44.2753,0,-53.1769	0/1:89:44,45:44:1568:45:1608:-118.218,0,-114.62	1/1:81:2,79:2:72:79:2840:-249.001,-17.5467,0	1/1:113:0,113:0:0:113:4037:-363.517,-34.0164,0	0/1:42:15,27:15:540:27:972:-75.1546,0,-36.2933	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:86:57,29:57:2044:29:1036:-67.6653,0,-158.343	1/1:140:0,140:0:0:140:4977:-448.079,-42.1442,0	0/1:174:78,96:78:2767:96:3439:-257.344,0,-196.89	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:164:85,79:85:3044:79:2805:-203.32,0,-224.821	0/1:74:23,51:23:805:51:1821:-141.893,0,-50.4913	0/1:55:33,22:33:1175:22:792:-55.049,0,-89.5003	0/1:23:4,19:4:144:19:680:-54.6055,0,-6.38993	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:13:0,13:0:0:13:455:-41.282,-3.91339,0	1/1:23:0,23:0:0:23:807:-72.9492,-6.92369,0	1/1:23:0,23:0:0:23:819:-74.0316,-6.92369,0	0/1:138:56,82:56:2012:82:2923:-221.763,0,-139.811	1/1:95:0,95:0:0:95:3399:-306.124,-28.5979,0	0/1:57:27,30:27:968:30:1068:-79.2734,0,-70.2787	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/1:93:45,48:45:1596:48:1724:-127.45,0,-115.934	0/1:30:12,18:12:432:18:639:-48.8073,0,-30.1903	0/1:161:88,73:88:3152:73:2620:-187.581,0,-235.439	0/1:49:24,25:24:860:25:900:-66.5705,0,-62.9714	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:74:0,74:0:0:74:2637:-237.576,-22.2762,0	0/1:117:61,56:61:2179:56:1984:-143.611,0,-161.155	1/1:101:0,101:0:0:101:3602:-324.386,-30.404,0	0/1:64:38,26:38:1360:26:928:-64.5723,0,-103.435	0/1:77:29,48:29:1040:48:1724:-132.266,0,-70.7351	1/1:73:0,73:0:0:73:2602:-234.427,-21.9752,0	0/1:11:5,6:5:161:6:216:-16.4792,0,-11.4952	1/1:63:0,63:0:0:63:2255:-203.212,-18.9649,0	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:15:4,11:4:144:11:387:-30.6505,0,-8.79817	1/1:92:0,92:0:0:92:3293:-296.589,-27.6948,0	1/1:37:0,37:0:0:37:1309:-118.11,-11.1381,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:20:0,20:0:0:20:699:-63.231,-6.0206,0	0/1:39:15,24:15:532:24:855:-65.53,0,-36.4729	1/1:75:0,75:0:0:75:2679:-241.355,-22.5773,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:151:0,151:0:0:151:5417:-487.657,-45.4555,0	1/1:133:6,127:6:216:127:4520:-386.552,-20.2465,0	0/1:50:21,29:21:752:29:1032:-78.142,0,-52.9548	0/1:82:45,37:45:1612:37:1328:-95.1378,0,-120.686	1/1:103:3,100:3:108:100:3581:-312.422,-20.9309,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:58:0,58:0:0:58:2063:-185.941,-17.4597,0	1/1:49:0,49:0:0:49:1724:-155.443,-14.7505,0	0/1:30:10,20:10:356:20:720:-56.0979,0,-23.3503	1/1:115:0,114:0:0:114:4057:-364.955,-34.3174,0	0/1:51:30,21:30:1076:21:752:-52.6537,0,-81.8003	1/1:106:0,106:0:0:106:3782:-340.579,-31.9092,0	0/1:130:65,65:65:2312:65:2309:-168.935,0,-169.207	0/1:195:126,68:126:4499:68:2428:-160.164,0,-346.468	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	1/1:75:2,73:2:72:73:2619:-229.12,-15.7405,0	1/1:106:0,106:0:0:106:3786:-340.937,-31.9092,0	1/1:104:0,104:0:0:104:3727:-335.63,-31.3071,0	0/1:44:26,18:26:928:18:648:-45.4066,0,-70.5929	1/1:49:0,49:0:0:49:1756:-158.323,-14.7505,0	0/1:40:13,27:13:468:27:972:-75.7567,0,-30.4184	0/1:100:46,54:46:1648:54:1925:-143.422,0,-118.506	0/1:27:13,14:13:464:14:500:-37.2084,0,-33.9697	0/1:53:21,32:21:744:32:1140:-86.9546,0,-51.3297	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:50:20,30:20:716:30:1080:-82.4618,0,-49.7162	0/1:94:49,45:49:1760:45:1616:-117.433,0,-130.387	0/1:51:27,24:27:959:24:864:-62.73,0,-71.2729	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:95:2,93:2:72:93:3327:-292.811,-21.7611,0
chr06	32009346	.	G	A	29586.5	PASS	AB=0.503817;ABP=3.44128;AC=47;AF=0.25;AN=188;AO=1736;CIGAR=1X;DP=6698;DPB=6698;DPRA=1.14763;EPP=3686.33;EPPR=10458.7;GTI=0;LEN=1;MEANALT=1;MQM=59.9862;MQMR=59.9927;NS=94;NUMALT=1;ODDS=3.97319;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62262;QR=177363;RO=4958;RPL=10;RPP=3686.33;RPPR=10467.3;RPR=1726;RUN=1;SAF=1736;SAP=3772.69;SAR=0;SRF=4957;SRP=10760.5;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:24,27:24:851:27:968:-72.0848,0,-61.5569	0/1:42:20,22:20:716:22:792:-58.9624,0,-52.1245	0/1:261:103,158:103:3700:158:5660:-430.933,0,-254.632	0/0:162:162,0:162:5808:0:0:0,-48.7669,-522.832	0/0:86:84,2:84:3011:2:68:0,-19.4309,-264.762	0/0:53:53,0:53:1886:0:0:0,-15.9546,-170.017	0/0:65:63,2:63:2256:2:72:0,-12.7302,-196.466	0/1:114:63,51:63:2264:51:1828:-130.484,0,-169.705	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:98:41,57:41:1463:57:2048:-155.091,0,-102.464	0/1:63:31,32:31:1112:32:1152:-85.0253,0,-81.4265	0/0:135:135,0:135:4823:0:0:0,-40.639,-434.225	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.626	0/1:32:10,22:10:345:22:788:-61.6056,0,-21.7479	0/1:63:26,37:26:924:37:1328:-100.857,0,-64.5128	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	0/0:52:52,0:52:1854:0:0:0,-15.6536,-167.138	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:36:15,21:15:540:21:752:-57.1673,0,-38.0995	0/1:88:45,43:45:1591:43:1546:-112.943,0,-116.989	0/0:80:78,2:78:2791:2:72:0,-17.2457,-244.593	0/0:113:112,0:112:4002:0:0:0,-33.7154,-360.009	0/1:43:28,15:28:1004:15:536:-35.6305,0,-77.7316	0/0:23:22,0:22:788:0:0:0,-6.62266,-70.885	0/1:83:28,55:28:1008:55:1970:-152.589,0,-66.0509	0/0:144:144,0:144:5141:0:0:0,-43.3483,-462.831	0/1:172:95,77:95:3404:77:2757:-196.593,0,-254.797	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/1:167:81,86:81:2884:86:3084:-227.516,0,-209.526	0/1:75:52,23:52:1864:23:828:-52.2669,0,-145.462	0/1:52:19,33:19:684:33:1180:-90.8545,0,-46.2368	0/1:24:20,4:20:720:4:140:-5.71986,0,-57.9041	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:144:89,55:89:3184:55:1980:-135.126,0,-243.436	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.765	0/1:58:30,28:30:1063:28:1008:-73.5766,0,-78.5211	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:93:47,46:47:1688:46:1636:-119.533,0,-124.211	0/1:31:18,13:18:640:13:468:-33.1277,0,-48.5974	0/1:164:74,90:74:2647:90:3240:-242.451,0,-189.107	0/1:49:25,24:25:900:24:864:-63.3321,0,-66.5705	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.953	0/1:115:55,60:55:1972:60:2128:-157.168,0,-143.136	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/1:66:27,39:27:972:39:1404:-106.791,0,-67.9299	0/1:79:49,30:49:1760:30:1076:-73.3715,0,-134.903	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/0:93:93,0:93:3320:0:0:0,-27.9958,-299.018	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:39:24,15:24:864:15:524:-35.7495,0,-66.3424	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.944	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:150:149,0:149:5352:0:0:0,-44.8535,-481.451	0/0:131:125,6:125:4480:6:216:0,-19.6444,-382.952	0/1:51:30,21:30:1080:21:756:-53.0147,0,-82.1607	0/1:79:35,44:35:1241:44:1580:-118.71,0,-88.2111	0/0:97:94,3:94:3368:3:108:0,-19.1247,-293.261	0/0:83:83,0:83:2967:0:0:0,-24.9855,-267.263	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.664	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:30:20,10:20:712:10:360:-23.7134,0,-55.3758	0/0:115:115,0:115:4123:0:0:0,-34.6184,-371.253	0/1:51:21,30:21:752:30:1061:-80.4468,0,-52.6537	0/0:106:105,1:105:3740:1:36:0,-28.3109,-333.204	0/1:129:65,64:65:2315:64:2304:-168.788,0,-169.777	0/1:199:71,128:71:2548:128:4596:-353.898,0,-169.665	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/0:74:72,2:72:2584:2:72:0,-15.4395,-225.972	0/0:103:103,0:103:3663:0:0:0,-31.0061,-329.874	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.123	0/1:43:17,26:17:608:26:936:-71.6152,0,-42.1077	0/0:48:47,0:47:1684:0:0:0,-14.1484,-151.487	0/1:41:28,13:28:1000:13:464:-29.7553,0,-77.9731	0/1:107:58,49:58:2067:49:1760:-126.474,0,-154.09	0/1:26:15,11:15:540:11:392:-27.7933,0,-41.1098	0/1:56:34,22:34:1211:22:792:-54.748,0,-92.4378	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:50:30,20:30:1076:20:720:-50.0773,0,-82.1014	0/1:96:48,48:48:1696:48:1728:-126.906,0,-124.024	0/1:53:26,27:26:932:27:972:-71.8433,0,-68.2443	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:95:93,2:93:3336:2:72:0,-21.7611,-293.62
chr06	32022949	.	TAT	TT,TTT	117173	PASS	AB=0.516655,0.482282;ABP=9.80942,10.7051;AC=140,48;AF=0.744681,0.255319;AN=188;AO=4292,1365;CIGAR=1M1D1M,1M1X1M;DP=5663;DPB=4232.33;DPRA=0,0.990661;EPP=9244.96,2932.43;EPPR=9.52472;GTI=1;LEN=1,1;MEANALT=1.56383,2.04;MQM=44.1214,56.8901;MQMR=37.3333;NS=94;NUMALT=2;ODDS=0.363263;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=150614,48921;QR=90;RO=3;RPL=4283,1361;RPP=9244.96,2932.43;RPPR=9.52472;RPR=9,4;RUN=1,1;SAF=0,0;SAP=9322.97,2967.07;SAR=4292,1365;SRF=0;SRP=9.52472;SRR=3;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,22,16:0:0:22,16:765,568:-103.362,-46.4996,-39.8769,-57.2024,0,-52.3859	1/2:87:0,46,41:0:0:46,41:1620,1476:-246.798,-120.654,-106.807,-126.493,0,-114.151	1/2:113:0,55,58:0:0:55,58:1935,2076:-321.437,-168.843,-152.287,-152.943,0,-135.483	1/1:111:0,110,1:0:0:110,1:3865,36:-343.272,-33.1133,0,-340.335,-29.8165,-340.034	1/2:47:0,41,6:0:0:41,6:1437,212:-132.013,-17.6102,-5.26792,-114.754,0,-112.948	1/1:36:0,36,0:0:0:36,0:1280,0:-111.299,-10.8371,0,-111.299,-10.8371,-111.299	1/1:105:1,104,0:1:28:104,0:3632,0:-318.667,-28.9053,0,-318.968,-31.3071,-321.099	1/2:119:0,69,50:0:0:69,50:2421,1796:-336.983,-146.621,-125.85,-190.713,0,-175.661	1/1:77:0,77,0:0:0:77,0:2671,0:-233.591,-23.1793,0,-233.591,-23.1793,-233.591	1/2:73:0,41,32:0:0:41,32:1445,1137:-209.146,-92.8444,-80.5021,-116.653,0,-107.02	1/2:37:0,18,19:0:0:18,19:644,684:-107.858,-56.16,-50.7415,-52.0544,0,-46.3349	1/1:41:0,41,0:0:0:41,0:1414,0:-124.535,-12.3422,0,-124.535,-12.3422,-124.535	1/1:45:0,45,0:0:0:45,0:1573,0:-137.452,-13.5464,0,-137.452,-13.5464,-137.452	1/2:45:0,23,22:0:0:23,22:816,792:-129.728,-64.9399,-58.0162,-65.1415,0,-58.5188	1/2:30:0,17,13:0:0:17,13:600,464:-86.4694,-38.1786,-33.0611,-48.6442,0,-44.7308	1/1:40:0,40,0:0:0:40,0:1409,0:-125.047,-12.0412,0,-125.047,-12.0412,-125.047	1/1:31:0,31,0:0:0:31,0:1096,0:-96.1793,-9.33193,0,-96.1793,-9.33193,-96.1793	1/1:39:0,39,0:0:0:39,0:1373,0:-120.712,-11.7402,0,-120.712,-11.7402,-120.712	1/2:17:0,6,11:0:0:6,11:216,392:-49.3716,-32.2652,-30.459,-17.4587,0,-14.1473	1/2:167:1,89,77:1:28:89,77:3095,2768:-471.909,-223.61,-199.021,-246.47,0,-225.493	1/1:82:1,81,0:1:34:81,0:2817,0:-243.263,-21.4968,0,-243.564,-24.3834,-246.131	1/1:74:0,74,0:0:0:74,0:2620,0:-233.687,-22.2762,0,-233.687,-22.2762,-233.687	1/2:52:0,27,25:0:0:27,25:940,885:-147.847,-72.2381,-64.1103,-75.9583,0,-68.4325	1/1:57:0,57,0:0:0:57,0:1990,0:-174.607,-17.1587,0,-174.607,-17.1587,-174.607	1/2:63:0,32,31:0:0:32,31:1093,1112:-178.317,-91.007,-81.3741,-87.6579,0,-78.326	1/1:173:0,173,0:0:0:173,0:6032,0:-532.95,-52.0782,0,-532.95,-52.0782,-532.95	1/2:102:0,62,40:0:0:62,40:2170,1436:-290.225,-117.436,-98.7718,-173.141,0,-161.1	1/2:24:0,13,11:0:0:13,11:460,396:-68.8457,-32.5472,-28.6338,-36.6504,0,-33.339	1/2:141:0,67,74:0:0:67,74:2364,2652:-407.428,-216.564,-196.395,-191.217,0,-168.941	1/2:112:0,52,60:0:0:52,60:1814,2148:-320.319,-175.362,-159.709,-145.306,0,-127.245	1/2:66:0,28,38:0:0:28,38:989,1364:-189.812,-111.525,-103.096,-78.6374,0,-67.1983	1/2:2:0,1,1:0:0:1,1:36,36:-6.17399,-3.29553,-2.9945,-3.23509,0,-2.93406	1/1:8:0,8,0:0:0:8,0:269,0:-24.1703,-2.40824,0,-24.1703,-2.40824,-24.1703	1/1:1:0,1,0:0:0:1,0:36,0:-3.5027,-0.30103,0,-3.5027,-0.30103,-3.5027	1/1:3:0,3,0:0:0:3,0:108,0:-9.80756,-0.90309,0,-9.80756,-0.90309,-9.80756	1/1:6:0,6,0:0:0:6,0:208,0:-18.6341,-1.80618,0,-18.6341,-1.80618,-18.6341	1/2:131:0,79,52:0:0:79,52:2786,1872:-374.648,-153.083,-129.302,-221.919,0,-206.265	1/1:138:0,138,0:0:0:138,0:4823,0:-425.523,-41.5421,0,-425.523,-41.5421,-425.523	1/2:40:0,24,15:0:0:24,15:832,540:-108.984,-44.0761,-36.8514,-64.9628,0,-60.4473	1/2:5:0,3,2:0:0:3,2:108,72:-14.8722,-6.23141,-5.32832,-8.99805,0,-8.39599	1/2:88:0,56,32:0:0:56,32:1976,1141:-250.499,-92.9461,-76.0884,-157.905,0,-148.272	1/2:21:0,12,9:0:0:12,9:424,320:-59.7395,-26.3512,-22.7388,-33.7377,0,-31.0284	1/2:75:0,37,38:0:0:37,38:1293,1364:-213.59,-111.278,-100.14,-102.661,0,-91.2218	1/2:39:0,23,16:0:0:23,16:820,576:-113.357,-47.2971,-40.3734,-66.4163,0,-61.5998	1/1:44:0,44,0:0:0:44,0:1576,0:-139.352,-13.2453,0,-139.352,-13.2453,-139.352	1/1:49:0,49,0:0:0:49,0:1713,0:-152.906,-14.7505,0,-152.906,-14.7505,-152.906	1/2:59:0,30,29:0:0:30,29:1045,1040:-166.449,-85.0236,-75.9927,-81.7721,0,-73.0422	1/1:77:0,77,0:0:0:77,0:2706,0:-238.694,-23.1793,0,-238.694,-23.1793,-238.694	1/2:67:0,30,37:0:0:30,37:1045,1317:-191.365,-107.586,-98.555,-84.128,0,-72.9899	1/2:91:0,46,45:0:0:46,45:1601,1616:-260.736,-131.993,-118.145,-129.095,0,-115.549	1/1:113:0,113,0:0:0:113,0:3910,0:-348.922,-34.0164,0,-348.922,-34.0164,-348.922	1/2:4:0,2,2:0:0:2,2:72,72:-11.9897,-6.18697,-5.58491,-6.15931,0,-5.55725	1/1:130:0,130,0:0:0:130,0:4594,0:-399.736,-39.1339,0,-399.736,-39.1339,-399.736	1/2:55:0,32,22:0:0:32,22:1137,788:-156.214,-64.2624,-54.6294,-91.9482,0,-85.3255	1/2:12:0,8,4:0:0:8,4:280,144:-33.3192,-11.9633,-9.55506,-21.7033,0,-20.4992	1/1:86:0,86,0:0:0:86,0:3007,0:-264.76,-25.8886,0,-264.76,-25.8886,-264.76	1/1:25:0,25,0:0:0:25,0:865,0:-75.8734,-7.52575,0,-75.8734,-7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chr06	32022955	.	TAT	TT,TTT	119707	PASS	AB=0.523358,0.47594;ABP=16.5021,17.3258;AC=140,48;AF=0.744681,0.255319;AN=188;AO=4386,1362;CIGAR=1M1D1M,1M1X1M;DP=5754;DPB=4291.33;DPRA=0,1.01692;EPP=9527.09,2960.56;EPPR=5.18177;GTI=2;LEN=1,1;MEANALT=1.60638,2.0566;MQM=44.1224,56.8789;MQMR=42;NS=94;NUMALT=2;ODDS=0.416099;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=155714,48805;QR=36;RO=1;RPL=4386,1362;RPP=9527.09,2960.56;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=9527.09,2960.56;SAR=4386,1362;SRF=0;SRP=5.18177;SRR=1;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,23,16:0:0:23,16:794,576:-106.935,-47.2186,-40.295,-60.06,0,-55.2435	1/2:86:0,46,40:0:0:46,40:1652,1440:-246.747,-117.72,-103.872,-129.38,0,-117.339	1/2:112:0,54,58:0:0:54,58:1921,2088:-321.186,-169.915,-153.659,-151.623,0,-134.163	1/1:113:1,111,1:1:36:111,1:3942,36:-346.831,-30.5677,0,-344.195,-30.4726,-346.745	1/2:49:0,43,6:0:0:43,6:1525,212:-139.068,-17.6102,-4.66586,-121.81,0,-120.004	1/1:37:0,37,0:0:0:37,0:1297,0:-113.165,-11.1381,0,-113.165,-11.1381,-113.165	1/1:107:0,106,1:0:0:106,1:3724,26:-329.571,-31.9092,0,-327.59,-29.674,-327.289	1/2:121:0,72,49:0:0:72,49:2553,1756:-343.797,-143.347,-121.673,-200.801,0,-186.05	1/1:79:0,79,0:0:0:79,0:2783,0:-243.027,-23.7814,0,-243.027,-23.7814,-243.027	1/2:74:0,43,31:0:0:43,31:1519,1112:-213.202,-90.9007,-77.9564,-122.656,0,-113.324	1/2:37:0,18,19:0:0:18,19:640,684:-107.519,-56.16,-50.7415,-51.7143,0,-45.9948	1/1:43:0,43,0:0:0:43,0:1536,0:-134.91,-12.9443,0,-134.91,-12.9443,-134.91	1/1:45:0,45,0:0:0:45,0:1616,0:-141.47,-13.5464,0,-141.47,-13.5464,-141.47	1/2:46:0,24,22:0:0:24,22:856,792:-132.923,-64.9399,-57.7151,-68.3378,0,-61.7151	1/2:30:0,17,13:0:0:17,13:608,468:-87.519,-38.5398,-33.4223,-49.3363,0,-45.4229	1/1:42:0,42,0:0:0:42,0:1482,0:-131.393,-12.6433,0,-131.393,-12.6433,-131.393	1/1:34:0,34,0:0:0:34,0:1209,0:-105.746,-10.235,0,-105.746,-10.235,-105.746	1/1:39:0,39,0:0:0:39,0:1400,0:-122.8,-11.7402,0,-122.8,-11.7402,-122.8	1/2:17:0,7,10:0:0:7,10:252,360:-49.7293,-29.6974,-27.5902,-20.3867,0,-17.3764	1/2:168:0,91,77:0:0:91,77:3253,2749:-486.097,-224.383,-196.989,-262.069,0,-238.89	1/1:84:0,82,1:0:0:82,1:2901,33:-252.736,-24.6845,0,-250.226,-22.1803,-249.925	1/1:77:0,77,0:0:0:77,0:2722,0:-241.985,-23.1793,0,-241.985,-23.1793,-241.985	1/2:52:0,27,25:0:0:27,25:968,885:-150.401,-72.4205,-64.2927,-78.334,0,-70.8083	1/1:61:0,61,0:0:0:61,0:2180,0:-191.256,-18.3628,0,-191.256,-18.3628,-191.256	1/2:63:0,32,31:0:0:32,31:1152,1112:-183.182,-91.007,-81.3741,-92.5308,0,-83.1989	1/1:178:0,178,0:0:0:178,0:6290,0:-552.777,-53.5833,0,-552.777,-53.5833,-552.777	1/2:100:0,60,40:0:0:60,40:2141,1440:-288.403,-117.795,-99.733,-170.964,0,-158.923	1/2:24:0,13,11:0:0:13,11:468,396:-69.5016,-32.5472,-28.6338,-37.3088,0,-33.9974	1/2:142:0,68,74:0:0:68,74:2413,2656:-411.752,-216.864,-196.394,-195.243,0,-172.967	1/2:114:0,54,60:0:0:54,60:1932,2152:-329.838,-175.721,-159.466,-154.471,0,-136.41	1/2:66:0,28,38:0:0:28,38:1008,1359:-191.017,-111.074,-102.646,-80.296,0,-68.8568	1/2:2:0,1,1:0:0:1,1:36,36:-6.17399,-3.29553,-2.9945,-3.23509,0,-2.93406	1/1:10:0,10,0:0:0:10,0:330,0:-29.5611,-3.0103,0,-29.5611,-3.0103,-29.5611	1/1:1:0,1,0:0:0:1,0:36,0:-3.5027,-0.30103,0,-3.5027,-0.30103,-3.5027	1/1:3:0,3,0:0:0:3,0:108,0:-9.80756,-0.90309,0,-9.80756,-0.90309,-9.80756	1/1:6:0,6,0:0:0:6,0:216,0:-19.2648,-1.80618,0,-19.2648,-1.80618,-19.2648	1/2:133:0,81,52:0:0:81,52:2870,1868:-380.647,-152.724,-128.34,-228.277,0,-212.624	1/1:138:0,138,0:0:0:138,0:4926,0:-433.65,-41.5421,0,-433.65,-41.5421,-433.65	1/2:40:0,25,15:0:0:25,15:900,536:-114.064,-44.011,-36.4852,-70.4057,0,-65.8903	1/2:5:0,3,2:0:0:3,2:108,72:-14.8722,-6.23141,-5.32832,-8.99805,0,-8.39599	1/2:90:0,58,32:0:0:58,32:2072,1133:-256.853,-92.3984,-74.9387,-164.806,0,-155.173	1/2:21:0,12,9:0:0:12,9:417,324:-59.4836,-26.7137,-23.1014,-33.1193,0,-30.4101	1/2:76:0,37,39:0:0:37,39:1309,1385:-216.815,-112.883,-101.745,-104.281,0,-92.5409	1/2:41:0,25,16:0:0:25,16:870,576:-117.117,-47.2971,-39.7713,-70.1732,0,-65.3568	1/1:47:0,47,0:0:0:47,0:1672,0:-147.944,-14.1484,0,-147.944,-14.1484,-147.944	1/1:49:0,48,1:0:0:48,1:1709,36:-152.105,-14.4494,0,-149.19,-11.177,-148.889	1/2:60:0,31,29:0:0:31,29:1116,1044:-172.477,-85.382,-76.0501,-87.4478,0,-78.718	1/1:78:0,78,0:0:0:78,0:2747,0:-242.982,-23.4803,0,-242.982,-23.4803,-242.982	1/2:68:0,31,37:0:0:31,37:1097,1332:-196.971,-108.938,-99.6061,-88.387,0,-77.2489	1/2:92:0,47,45:0:0:47,45:1649,1601:-263.347,-130.685,-116.537,-133.013,0,-119.467	1/1:118:0,118,0:0:0:118,0:4134,0:-368.331,-35.5215,0,-368.331,-35.5215,-368.331	1/2:4:0,2,2:0:0:2,2:72,72:-11.9897,-6.18697,-5.58491,-6.15931,0,-5.55725	1/1:130:0,130,0:0:0:130,0:4656,0:-404.373,-39.1339,0,-404.373,-39.1339,-404.373	1/2:55:0,33,22:0:0:33,22:1180,792:-160.486,-64.983,-55.049,-95.8605,0,-89.2378	1/2:12:0,8,4:0:0:8,4:288,144:-33.6591,-11.9633,-9.55506,-22.0447,0,-20.8406	1/1:89:0,89,0:0:0:89,0:3124,0:-274.654,-26.7917,0,-274.654,-26.7917,-274.654	1/1:26:0,26,0:0:0:26,0:919,0:-81.0767,-7.82678,0,-81.0767,-7.82678,-81.0767	1/1:8:0,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chr06	32028645	.	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chr06	32037111	.	TGCC	CGCC,CGCT	570042	PASS	AB=0.494926,0.501723;ABP=5.34599,3.27971;AC=140,48;AF=0.744681,0.255319;AN=188;AO=15695,5287;CIGAR=1X3M,1X2M1X;DP=21073;DPB=21074.2;DPRA=17.4194,1.30657;EPP=34049.5,11466.2;EPPR=20.3821;GTI=1;LEN=1,4;MEANALT=2.58065,2.84058;MQM=59.9814,59.9166;MQMR=60;NS=94;NUMALT=2;ODDS=8.54165;PAIRED=0,0;PAIREDR=0;PAO=3.5,3.5;PQA=126,126;PQR=0;PRO=0;QA=556259,184526;QR=276;RO=8;RPL=7481,2815;RPP=77.3466,51.331;RPPR=7.35324;RPR=8214,2472;RUN=1,1;SAF=7485,2815;SAP=75.7328,51.331;SAR=8210,2472;SRF=2;SRP=7.35324;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:142:0,70,72:0:0:70,72:2486,2465:-402.996,-200.429,-179.357,-202.916,0,-181.242	1/2:326:1,182,142:1:36:182,142:6457,4954:-925.715,-399.936,-348.086,-523.135,0,-483.326	1/2:333:0,207,125:0:0:207,125:7353,4359:-953.705,-354.558,-292.245,-599.197,0,-561.568	1/1:379:0,376,1:0:0:376,1:13369,36:-1202.59,-113.187,0,-1199.65,-110.228,-1199.35	1/1:168:0,164,3:0:0:164,3:5841,108:-525.447,-49.3689,0,-516.634,-40.5492,-515.731	1/1:80:0,79,1:0:0:79,1:2811,35:-252.881,-23.7814,0,-250.033,-20.5838,-249.732	1/1:356:0,353,1:0:0:353,1:12481,36:-1122.81,-106.264,0,-1119.87,-103.31,-1119.57	1/2:315:0,168,147:0:0:168,147:5904,5116:-896.89,-416.337,-365.764,-480.903,0,-436.651	1/1:199:0,197,1:0:0:197,1:7036,36:-632.971,-59.3029,0,-630.034,-56.3206,-629.733	1/2:266:0,122,143:0:0:122,143:4343,5029:-763.311,-409.357,-372.631,-353.948,0,-310.901	1/2:240:0,113,127:0:0:113,127:3998,4437:-686.918,-361.275,-327.259,-325.994,0,-287.763	1/1:203:0,202,0:0:0:202,0:7139,0:-642.218,-60.8081,0,-642.218,-60.8081,-642.218	1/1:199:0,198,1:0:0:198,1:6996,35:-629.298,-59.6039,0,-626.45,-56.4063,-626.149	1/2:190:0,98,91:0:0:98,91:3462,3133:-536.519,-254.573,-225.072,-282.063,0,-254.669	1/2:160:0,77,83:0:0:77,83:2746,2909:-460.913,-237.064,-213.885,-224.202,0,-199.217	1/1:181:0,181,0:0:0:181,0:6394,0:-575.554,-54.4864,0,-575.554,-54.4864,-575.554	1/1:173:0,171,0:0:0:171,0:6061,0:-545.212,-51.4761,0,-545.212,-51.4761,-545.212	1/1:187:0,187,0:0:0:187,0:6568,0:-591.206,-56.2926,0,-591.206,-56.2926,-591.206	1/2:163:0,85,78:0:0:85,78:3012,2764:-470.894,-225.524,-199.936,-245.724,0,-222.244	1/2:632:1,279,348:1:36:279,348:9953,12209:-1800.88,-989.811,-908.761,-808.475,0,-706.654	1/1:294:0,291,3:0:0:291,3:10226,102:-919.942,-87.5997,0,-911.669,-78.9859,-910.765	1/1:117:0,116,0:0:0:116,0:4116,0:-370.266,-34.9195,0,-370.266,-34.9195,-370.266	1/2:183:0,98,85:0:0:98,85:3437,3018:-525.955,-246.264,-216.763,-280.044,0,-254.456	1/1:302:0,300,0:0:0:300,0:10628,0:-956.084,-90.309,0,-956.084,-90.309,-956.084	1/2:185:0,80,105:0:0:80,105:2838,3643:-527.7,-296.475,-272.392,-231.576,0,-199.968	1/1:611:0,610,0:0:0:610,0:21629,0:-1945.72,-183.628,0,-1945.72,-183.628,-1945.72	1/2:526:0,277,246:0:0:277,246:9880,8534:-1499.08,-693.672,-610.286,-805.426,0,-731.373	1/2:94:0,52,42:0:0:52,42:1841,1466:-269.553,-119.59,-103.936,-150.315,0,-137.671	1/2:459:0,233,226:0:0:233,226:8253,7901:-1315.33,-643.092,-572.952,-672.59,0,-604.557	1/2:241:0,130,108:0:0:130,108:4631,3743:-681.699,-304.229,-265.095,-377.483,0,-344.972	1/2:211:0,89,122:0:0:89,122:3158,4209:-599.58,-342.276,-315.484,-257.654,0,-220.928	1/2:16:0,8,8:0:0:8,8:288,287:-47.2682,-23.7682,-21.36,-23.8592,0,-21.4509	1/1:47:0,47,0:0:0:47,0:1668,0:-150.407,-14.1484,0,-150.407,-14.1484,-150.407	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/2:544:0,262,278:0:0:262,278:9317,9689:-1547.26,-787.981,-709.112,-759.303,0,-675.617	1/1:235:0,231,1:0:0:231,1:8195,36:-737.216,-69.5379,0,-734.278,-66.5989,-733.977	1/2:185:0,89,94:0:0:89,94:3162,3334:-529.397,-271.738,-244.946,-257.766,0,-229.469	2/2:13:0,0,13:0:0:0,13:0,436:-39.5595,-39.5595,-39.5595,-3.91339,-3.91339,0	1/2:223:0,88,134:0:0:88,134:3139,4704:-638.72,-382.83,-356.34,-255.884,0,-215.546	1/2:121:0,56,65:0:0:56,65:1997,2254:-346.304,-183.556,-166.699,-163.1,0,-143.533	1/2:375:0,183,191:0:0:183,191:6470,6617:-1064.62,-537.854,-482.765,-526.833,0,-469.337	1/2:239:0,119,120:0:0:119,120:4196,4207:-684.34,-342.691,-306.869,-342,0,-305.877	1/1:176:1,173,0:1:36:173,0:6121,0:-547.45,-49.0992,0,-547.751,-52.0782,-550.689	1/1:196:1,195,0:1:36:195,0:6912,0:-618.556,-55.4036,0,-618.857,-58.7009,-621.794	1/2:324:1,159,164:1:33:159,164:5637,5724:-921.761,-462.823,-417.627,-456.593,0,-409.892	1/1:320:0,314,3:0:0:314,3:11161,101:-1004.05,-94.5234,0,-995.866,-86.3299,-994.963	1/2:224:0,119,104:0:0:119,104:4212,3653:-640.401,-297.313,-261.491,-343.081,0,-311.773	1/2:309:0,162,146:0:0:162,146:5764,5127:-887.14,-417.383,-368.616,-469.859,0,-425.909	1/1:343:0,341,1:0:0:341,1:12106,36:-1089.04,-102.651,0,-1086.1,-99.7138,-1085.8	1/2:24:0,11,13:0:0:11,13:392,468:-70.4971,-38.5463,-35.2349,-32.3087,0,-28.3953	1/1:325:0,323,0:0:0:323,0:11481,0:-1032.79,-97.2327,0,-1032.79,-97.2327,-1032.79	1/2:114:0,45,69:0:0:45,69:1608,2402:-326.776,-195.666,-182.119,-131.464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chr06	32051913	.	G	C	20024.5	PASS	AB=0.492199;ABP=4.12838;AC=45;AF=0.239362;AN=188;AO=1043;CIGAR=1X;DP=4756;DPB=4756;DPRA=0.894066;EPP=780.245;EPPR=1897.79;GTI=2;LEN=1;MEANALT=1.02128;MQM=42.2483;MQMR=59.7034;NS=94;NUMALT=1;ODDS=2.59597;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37196;QR=131429;RO=3709;RPL=827;RPP=780.245;RPPR=1910.45;RPR=216;RUN=1;SAF=0;SAP=2267.86;SAR=1043;SRF=3;SRP=8030.96;SRR=3706;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:10,1:10:341:1:36:-0.286945,0,-27.7064	0/1:43:29,14:29:1005:14:495:-31.9387,0,-77.8142	0/1:77:46,31:46:1627:31:1108:-76.7455,0,-123.539	0/0:176:176,0:176:6245:0:0:0,-52.9813,-562.081	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:34:23,11:23:816:11:381:-24.3856,0,-63.5267	0/0:35:35,0:35:1228:0:0:0,-10.536,-110.824	0/1:54:26,28:26:904:28:1008:-69.641,0,-65.3907	0/1:11:7,4:7:248:4:129:-8.02388,0,-19.3529	0/0:59:59,0:59:2091:0:0:0,-17.7608,-188.46	0/0:56:56,0:56:1952:0:0:0,-16.8577,-175.954	0/1:40:21,19:21:747:19:684:-46.7977,0,-55.5049	0/1:47:25,22:25:896:22:777:-52.3934,0,-66.8013	0/0:35:35,0:35:1195:0:0:0,-10.536,-107.719	0/0:20:19,0:19:665:0:0:0,-5.71957,-59.8135	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8767	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/1:81:43,38:43:1523:38:1338:-89.8845,0,-112.951	0/0:137:137,0:137:4868:0:0:0,-41.2411,-438.245	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:47:19,28:19:676:28:1004:-71.8396,0,-47.0196	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.8558	0/1:10:2,8:2:72:8:284:-21.6515,0,-3.82642	0/0:149:149,0:149:5260:0:0:0,-44.8535,-472.437	0/1:73:31,42:31:1091:42:1498:-105.931,0,-76.5236	0/1:16:7,9:7:252:9:316:-22.1044,0,-18.2125	0/1:117:51,66:51:1836:66:2360:-161.211,0,-130.264	0/1:65:37,28:37:1298:28:1008:-66.3297,0,-97.5502	0/1:52:29,23:29:1036:23:820:-54.5711,0,-77.9004	0/1:16:11,5:11:392:5:180:-10.9579,0,-30.8036	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:134:62,72:62:2193:72:2542:-173.833,0,-157.296	0/0:57:56,0:56:1996:0:0:0,-16.8577,-179.525	0/1:41:16,24:16:559:24:856:-64.9602,0,-38.2372	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:77:36,41:36:1284:41:1455:-101.12,0,-92.6808	0/1:20:12,8:12:432:8:288:-18.7089,0,-33.2006	0/1:51:21,30:21:752:30:1069:-75.8492,0,-52.6504	0/1:26:6,20:6:216:20:716:-53.1508,0,-11.9637	0/0:34:34,0:34:1158:0:0:0,-10.235,-104.517	0/0:45:45,0:45:1582:0:0:0,-13.5463,-142.643	0/1:35:18,17:18:630:17:604:-44.1546,0,-46.4886	0/0:91:91,0:91:3235:0:0:0,-27.3937,-291.302	0/1:51:25,26:25:896:26:936:-64.4465,0,-65.5972	0/1:100:76,24:76:2707:24:860:-42.4009,0,-213.739	0/0:57:57,0:57:2030:0:0:0,-17.1587,-182.902	0/1:7:6,1:6:216:1:36:-1.28039,0,-17.6833	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:61:37,24:37:1332:24:856:-53.0587,0,-101.82	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:78:78,0:78:2761:0:0:0,-23.4803,-248.694	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:36:17,19:17:595:19:684:-47.6203,0,-43.0314	0/0:70:70,0:70:2472:0:0:0,-21.0721,-222.531	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:192:192,0:192:6812:0:0:0,-57.7978,-612.772	0/0:85:85,0:85:3012:0:0:0,-25.5875,-271.27	0/1:41:16,25:16:572:25:888:-63.5774,0,-39.4712	0/1:33:15,18:15:528:18:633:-44.2212,0,-37.9174	0/0:113:113,0:113:4022:0:0:0,-34.0164,-362.139	0/0:92:91,1:91:3228:1:36:0,-24.3072,-287.336	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.313	0/1:18:3,15:3:108:15:540:-40.5725,0,-4.65663	0/0:60:60,0:60:2131:0:0:0,-18.0618,-192.058	0/1:61:40,21:40:1423:21:748:-49.2825,0,-110.004	0/0:96:96,0:96:3403:0:0:0,-28.8989,-306.479	0/1:134:76,58:76:2711:58:2072:-134.545,0,-203.853	0/1:23:8,15:8:284:15:536:-41.6511,0,-18.9797	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/0:24:23,0:23:802:0:0:0,-6.92369,-72.1381	0/0:62:62,0:62:2186:0:0:0,-18.6639,-196.997	0/0:56:56,0:56:1978:0:0:0,-16.8577,-178.293	0/0:132:132,0:132:4707:0:0:0,-39.736,-423.657	0/1:49:23,26:23:828:26:923:-63.2231,0,-60.0936	0/0:38:37,1:37:1319:1:36:0,-7.85266,-115.414	0/1:30:19,11:19:657:11:396:-24.011,0,-50.4193	0/1:82:39,43:39:1365:43:1548:-106.754,0,-98.4566	0/1:14:6,8:6:207:8:288:-22.053,0,-14.7525	0/1:48:21,27:21:728:27:967:-72.8977,0,-51.3883	0/0:54:54,0:54:1891:0:0:0,-16.2556,-170.463	0/1:23:11,12:11:381:12:423:-29.3465,0,-27.6969	0/1:50:24,26:24:860:26:928:-64.423,0,-62.6703	0/1:58:15,43:15:531:43:1546:-112.463,0,-30.6622	0/0:114:114,0:114:4068:0:0:0,-34.3174,-366.231	0/0:69:69,0:69:2458:0:0:0,-20.7711,-221.462
chr06	32051928	.	A	G	15722.7	PASS	AB=0.492481;ABP=4.05522;AC=45;AF=0.239362;AN=188;AO=1050;CIGAR=1X;DP=4835;DPB=4835;DPRA=0.882788;EPP=2265.72;EPPR=8105.16;GTI=2;LEN=1;MEANALT=1.04255;MQM=42.3438;MQMR=59.6865;NS=94;NUMALT=1;ODDS=3.78903;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37481;QR=135328;RO=3783;RPL=1048;RPP=2265.72;RPPR=8131.06;RPR=2;RUN=1;SAF=0;SAP=2283.06;SAR=1050;SRF=3;SRP=8191.65;SRR=3780;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:44:29,15:29:1032:15:540:-35.6912,0,-79.9482	0/1:77:46,31:46:1631:31:1112:-77.1058,0,-123.899	0/0:179:179,0:179:6389:0:0:0,-53.8844,-575.034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:35:24,11:24:841:11:392:-25.084,0,-65.4703	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:55:26,29:26:917:29:1040:-72.3111,0,-66.2666	0/1:11:7,4:7:252:4:144:-9.22279,0,-19.7176	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:40:20,20:20:716:20:716:-49.4853,0,-52.7183	0/1:46:25,21:25:900:21:752:-50.3697,0,-67.463	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.231	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:82:44,38:44:1584:38:1352:-90.9492,0,-118.139	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.796	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/1:49:23,26:23:809:26:923:-63.9492,0,-58.3562	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9062	0/1:10:2,8:2:72:8:288:-21.9114,0,-3.82642	0/0:156:156,0:156:5589:0:0:0,-46.9607,-502.005	0/1:75:33,42:33:1188:42:1504:-105.869,0,-84.6513	0/1:16:7,9:7:252:9:324:-22.2885,0,-18.2125	0/1:115:48,66:48:1720:66:2364:-162.005,0,-120.421	0/1:64:36,28:36:1277:28:1004:-66.3733,0,-95.9652	0/1:49:27,22:27:968:22:788:-52.5957,0,-72.6869	0/1:17:12,5:12:428:5:180:-10.6569,0,-33.7413	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:137:65,72:65:2340:72:2552:-173.734,0,-169.604	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.556	0/1:39:14,25:14:504:25:892:-68.8595,0,-33.9579	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:76:36,40:36:1275:40:1427:-98.8868,0,-92.173	0/1:19:11,8:11:392:8:288:-19.0099,0,-29.9005	0/1:50:21,29:21:737:29:1040:-74.0172,0,-51.5909	0/1:26:6,20:6:216:20:716:-53.1508,0,-11.9637	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.933	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.578	0/1:34:17,17:17:612:17:608:-44.817,0,-45.1784	0/0:98:98,0:98:3493:0:0:0,-29.5009,-314.481	0/1:52:24,28:24:864:28:996:-69.7378,0,-62.429	0/1:100:75,25:75:2688:25:900:-45.7074,0,-212.03	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.163	0/1:7:6,1:6:216:1:36:-1.28039,0,-17.6833	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:59:35,24:35:1256:24:860:-54.6127,0,-95.5845	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:75:75,0:75:2685:0:0:0,-22.5772,-241.851	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:36:17,19:17:604:19:684:-47.6203,0,-43.8453	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.549	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:195:195,0:195:6951:0:0:0,-58.7008,-625.249	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.197	0/1:41:15,26:15:525:26:936:-67.3601,0,-35.2358	0/1:34:16,18:16:572:18:644:-44.8123,0,-41.5784	0/0:114:114,0:114:4085:0:0:0,-34.3174,-367.797	0/0:99:98,1:98:3516:1:36:0,-26.4144,-313.24	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.1686	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.002	0/1:17:3,14:3:108:14:491:-36.9124,0,-4.95766	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:63:42,20:42:1493:20:708:-45.0222,0,-115.639	0/0:98:98,0:98:3495:0:0:0,-29.5009,-314.753	0/1:142:80,62:80:2868:62:2211:-144.212,0,-215.558	0/1:23:8,15:8:284:15:527:-40.8365,0,-18.9797	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.052	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.987	0/0:132:132,0:132:4706:0:0:0,-39.736,-423.625	0/1:50:24,26:24:851:26:914:-62.2706,0,-61.858	0/0:40:39,1:39:1389:1:36:0,-8.45472,-121.71	0/1:30:20,10:20:716:10:360:-20.9614,0,-55.7368	0/1:85:40,45:40:1436:45:1607:-111.042,0,-103.934	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:50:20,30:20:720:30:1068:-81.3806,0,-50.0773	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.872	0/1:22:10,12:10:360:12:419:-29.3888,0,-26.1216	0/1:51:25,26:25:900:26:919:-63.4705,0,-65.9685	0/1:59:16,43:16:572:43:1535:-111.734,0,-34.0527	0/0:117:117,0:117:4192:0:0:0,-35.2205,-377.388	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.506
chr06	32174965	.	G	A	108205	PASS	AB=0.472766;ABP=24.0632;AC=136;AF=0.73913;AN=184;AO=5197;CIGAR=1X;DP=6942;DPB=6942;DPRA=19.2611;EPP=11288.2;EPPR=3790.06;GTI=0;LEN=1;MEANALT=1.01111;MQM=59.6935;MQMR=59.9914;NS=92;NUMALT=1;ODDS=2.52116;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184343;QR=61546;RO=1744;RPL=0;RPP=11288.2;RPPR=3790.06;RPR=5197;RUN=1;SAF=0;SAP=11288.2;SAR=5197;SRF=0;SRP=3790.06;SRR=1744;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:14,12:14:492:12:417:-30.0275,0,-36.7856	0/1:129:54,75:54:1915:75:2678:-202.372,0,-133.794	0/1:130:65,65:65:2311:65:2310:-169.011,0,-169.117	1/1:116:0,116:0:0:116:4141:-372.866,-34.9195,0	1/1:71:0,71:0:0:71:2494:-224.708,-21.3731,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:116:0,116:0:0:116:4111:-370.172,-34.9195,0	0/1:158:88,70:88:3099:70:2485:-176.331,0,-231.575	1/1:79:0,79:0:0:79:2796:-251.86,-23.7814,0	0/1:40:18,22:18:622:22:788:-59.1171,0,-44.2608	0/1:45:23,22:23:802:22:771:-56.164,0,-58.9511	1/1:43:0,43:0:0:43:1527:-137.63,-12.9443,0	1/1:53:0,53:0:0:53:1881:-169.544,-15.9546,0	0/1:85:55,30:55:1946:30:1080:-71.9073,0,-149.827	0/1:61:32,29:32:1148:29:1009:-72.7559,0,-85.267	1/1:27:0,27:0:0:27:972:-87.6917,-8.12781,0	1/1:54:0,54:0:0:54:1905:-171.726,-16.2556,0	1/1:41:0,41:0:0:41:1454:-131.141,-12.3422,0	0/1:23:10,13:10:338:13:468:-35.536,0,-23.8223	0/1:101:56,45:56:1958:45:1590:-112.978,0,-146.043	1/1:153:0,153:0:0:153:5414:-487.001,-46.0576,0	1/1:74:0,74:0:0:74:2602:-234.368,-22.2762,0	0/1:88:31,57:31:1038:57:2035:-156.814,0,-67.2274	1/1:84:0,84:0:0:84:2983:-268.684,-25.2865,0	0/1:70:48,22:48:1692:22:788:-50.1727,0,-131.491	1/1:214:0,214:0:0:214:7638:-687.394,-64.4204,0	0/1:119:62,57:62:2202:57:2016:-145.778,0,-162.622	0/1:34:17,17:17:599:17:597:-43.8211,0,-44.0031	0/1:137:79,58:79:2795:58:2076:-145.867,0,-210.551	0/1:134:60,74:60:2103:74:2651:-198.191,0,-149.199	0/1:93:47,46:47:1675:46:1625:-118.54,0,-123.041	0/1:9:4,5:4:135:5:176:-13.4739,0,-9.77324	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:161:85,76:85:3000:76:2724:-196.93,0,-221.766	1/1:199:1,198:1:36:198:7019:-628.135,-56.3067,0	0/1:38:20,18:20:712:18:640:-46.4902,0,-52.9675	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:84:58,26:58:2062:26:932:-58.9123,0,-160.563	0/1:39:20,19:20:707:19:661:-48.0668,0,-52.2144	0/1:77:48,29:48:1703:29:1039:-70.645,0,-130.376	0/1:52:29,23:29:1028:23:810:-57.5631,0,-77.1795	1/1:44:0,44:0:0:44:1558:-140.502,-13.2453,0	1/1:84:0,84:0:0:84:2933:-264.2,-25.2865,0	0/1:78:31,47:31:1098:47:1672:-127.272,0,-75.6483	1/1:151:0,151:0:0:151:5335:-480.28,-45.4555,0	0/1:88:55,33:55:1947:33:1168:-78.7414,0,-149.015	0/1:105:55,50:55:1936:50:1780:-128.874,0,-142.906	1/1:152:1,151:1:36:151:5329:-476.072,-42.1583,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:118:0,117:0:0:117:4114:-369.914,-35.2205,0	0/1:48:18,30:18:639:30:1080:-83.0629,0,-43.3888	0/1:11:5,6:5:180:6:216:-16.4709,0,-13.2407	1/1:85:0,85:0:0:85:3005:-270.581,-25.5876,0	1/1:35:0,35:0:0:35:1247:-112.498,-10.5361,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:55:28,27:28:987:27:968:-70.8715,0,-72.5864	1/1:106:0,106:0:0:106:3766:-339.131,-31.9092,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:131:1,130:1:36:130:4602:-410.742,-35.8367,0	1/1:127:0,127:0:0:127:4497:-404.892,-38.2308,0	0/1:63:36,27:36:1280:27:963:-68.0164,0,-96.5383	0/1:61:36,25:36:1275:25:892:-62.2345,0,-96.6894	1/1:122:3,119:3:104:119:4230:-371.173,-27.0229,0	1/1:119:0,119:0:0:119:4239:-381.676,-35.8226,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:84:0,84:0:0:84:3004:-270.465,-25.2865,0	1/1:76:1,75:1:32:75:2679:-238.154,-19.679,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:90:0,90:0:0:90:3166:-285.024,-27.0927,0	0/1:61:45,16:45:1577:16:572:-33.4506,0,-123.853	1/1:107:0,107:0:0:107:3768:-339.259,-32.2102,0	0/1:125:67,58:67:2351:58:2057:-147.748,0,-174.218	0/1:85:42,43:42:1472:43:1521:-111.589,0,-107.184	1/1:66:0,66:0:0:66:2347:-211.474,-19.868,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:81:1,80:1:36:80:2841:-252.318,-20.7852,0	1/1:118:0,118:0:0:118:4206:-378.685,-35.5215,0	1/1:125:5,120:5:180:120:4239:-364.994,-21.0767,0	0/1:98:48,50:48:1703:50:1783:-131.242,0,-124.054	1/1:59:0,59:0:0:59:2093:-188.636,-17.7608,0	0/1:84:42,42:42:1468:42:1471:-107.394,0,-107.125	0/1:140:63,77:63:2229:77:2723:-203.152,0,-158.729	0/1:26:11,15:11:392:15:523:-39.5717,0,-27.7933	0/1:61:34,27:34:1208:27:954:-67.8107,0,-90.6633	1/1:47:0,47:0:0:47:1667:-150.297,-14.1484,0	0/1:21:9,12:9:324:12:432:-32.8903,0,-23.1842	0/1:69:38,31:38:1356:31:1054:-74.3861,0,-101.569	0/1:50:35,15:35:1230:15:540:-33.885,0,-95.9509	1/1:68:0,68:0:0:68:2432:-219.125,-20.47,0	1/1:73:0,73:0:0:73:2579:-232.359,-21.9752,0
chr06	32174979	.	G	C	109802	PASS	AB=0.469967;ABP=28.9664;AC=136;AF=0.73913;AN=184;AO=5235;CIGAR=1X;DP=7014;DPB=7014;DPRA=19.4611;EPP=11370.7;EPPR=3855.2;GTI=0;LEN=1;MEANALT=1.05556;MQM=59.6844;MQMR=59.9915;NS=92;NUMALT=1;ODDS=2.87974;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186627;QR=63099;RO=1774;RPL=0;RPP=11370.7;RPPR=3855.2;RPR=5235;RUN=1;SAF=0;SAP=11370.7;SAR=5235;SRF=0;SRP=3855.2;SRR=1774;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:14,12:14:495:12:432:-31.3877,0,-37.0563	0/1:131:55,76:55:1955:76:2724:-205.952,0,-136.79	0/1:133:65,68:65:2292:68:2427:-178.634,0,-166.503	1/1:115:0,115:0:0:115:4129:-371.788,-34.6185,0	1/1:68:0,68:0:0:68:2436:-219.491,-20.47,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:118:0,118:0:0:118:4204:-378.306,-35.5215,0	0/1:167:95,72:95:3376:72:2569:-181.178,0,-253.783	1/1:82:0,82:0:0:82:2914:-262.458,-24.6845,0	0/1:40:17,23:17:603:23:824:-62.3557,0,-42.5583	0/1:45:23,22:23:815:22:784:-57.3376,0,-60.1244	1/1:44:0,44:0:0:44:1554:-140.149,-13.2453,0	1/1:56:0,56:0:0:56:1976:-178.102,-16.8577,0	0/1:83:55,28:55:1945:28:1000:-65.3253,0,-150.339	0/1:61:33,28:33:1167:28:991:-71.1407,0,-86.9736	1/1:25:0,25:0:0:25:896:-80.9144,-7.52575,0	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	1/1:44:0,44:0:0:44:1572:-141.75,-13.2453,0	0/1:25:12,13:12:423:13:468:-34.9339,0,-30.8793	0/1:105:58,47:58:2076:47:1671:-119.061,0,-155.484	1/1:150:0,150:0:0:150:5348:-481.306,-45.1545,0	1/1:80:0,80:0:0:80:2835:-255.326,-24.0824,0	0/1:88:32,56:32:1148:56:1990:-152.822,0,-77.1392	1/1:85:0,84:0:0:84:2987:-268.68,-25.2865,0	0/1:69:48,21:48:1724:21:747:-46.7832,0,-134.674	1/1:219:0,219:0:0:219:7823:-704.032,-65.9256,0	0/1:120:61,59:61:2180:59:2112:-154.007,0,-160.343	0/1:36:17,19:17:603:19:667:-49.5175,0,-43.7624	0/1:138:80,58:80:2854:58:2076:-145.567,0,-215.555	0/1:137:64,73:64:2250:73:2597:-192.559,0,-161.52	0/1:93:47,46:47:1656:46:1652:-120.97,0,-121.329	0/1:9:4,5:4:144:5:180:-13.8381,0,-10.6043	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:161:86,75:86:3053:75:2673:-192.289,0,-226.533	1/1:195:1,194:1:36:194:6898:-617.248,-55.1026,0	0/1:40:21,19:21:752:19:680:-48.9289,0,-55.9651	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:82:58,24:58:2035:24:849:-52.0434,0,-158.735	0/1:39:20,19:20:716:19:667:-48.6098,0,-53.0275	0/1:78:48,30:48:1724:30:1071:-73.2213,0,-131.965	0/1:54:30,24:30:1072:24:856:-61.1031,0,-80.5368	1/1:45:0,45:0:0:45:1599:-144.191,-13.5464,0	1/1:82:0,82:0:0:82:2933:-264.199,-24.6845,0	0/1:78:30,48:30:1080:48:1707:-130.42,0,-74.0329	1/1:151:0,150:0:0:150:5348:-481.083,-45.1545,0	0/1:92:57,35:57:2039:35:1242:-84.326,0,-156.087	0/1:109:58,51:58:2053:51:1832:-132.346,0,-152.228	1/1:150:1,148:1:36:148:5301:-473.548,-41.615,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:121:0,121:0:0:121:4301:-387.136,-36.4246,0	0/1:50:18,32:18:648:32:1152:-88.9377,0,-43.6004	0/1:11:5,6:5:180:6:216:-16.4709,0,-13.2407	1/1:83:0,83:0:0:83:2956:-266.222,-24.9855,0	1/1:35:0,35:0:0:35:1243:-112.137,-10.5361,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:55:27,27:27:959:27:959:-70.0009,0,-70.0101	1/1:109:0,109:0:0:109:3904:-351.545,-32.8123,0	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	1/1:131:0,131:0:0:131:4649:-418.569,-39.4349,0	1/1:122:0,122:0:0:122:4354:-392.022,-36.7257,0	0/1:65:38,27:38:1337:27:944:-65.6916,0,-101.061	0/1:59:34,25:34:1216:25:900:-63.5579,0,-91.9858	1/1:124:3,121:3:108:121:4319:-378.801,-27.2526,0	1/1:118:0,118:0:0:118:4214:-379.427,-35.5215,0	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	1/1:86:0,86:0:0:86:3075:-276.956,-25.8886,0	1/1:77:1,76:1:36:76:2697:-239.373,-19.581,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:91:0,91:0:0:91:3254:-292.987,-27.3937,0	0/1:62:46,16:46:1620:16:564:-32.4264,0,-127.422	1/1:107:0,107:0:0:107:3821:-344.023,-32.2102,0	0/1:127:69,58:69:2463:58:2071:-148.42,0,-183.693	0/1:86:45,41:45:1607:41:1463:-106.065,0,-119.031	1/1:68:0,68:0:0:68:2412:-217.326,-20.47,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:82:1,81:1:36:81:2904:-257.988,-21.0862,0	1/1:120:0,120:0:0:120:4285:-385.784,-36.1236,0	1/1:127:5,122:5:176:122:4368:-376.968,-22.0458,0	0/1:101:48,53:48:1724:53:1881:-139.153,0,-125.041	1/1:59:0,59:0:0:59:2112:-190.347,-17.7608,0	0/1:84:42,42:42:1478:42:1500:-110.005,0,-108.026	0/1:140:62,78:62:2213:78:2757:-206.209,0,-157.289	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/1:62:35,27:35:1260:27:964:-68.4116,0,-95.0416	1/1:50:0,50:0:0:50:1746:-157.397,-15.0515,0	0/1:20:8,11:8:288:11:392:-29.5345,0,-20.188	0/1:68:39,29:39:1396:29:1020:-71.6399,0,-105.469	0/1:50:36,14:36:1279:14:496:-29.9228,0,-100.361	1/1:71:0,71:0:0:71:2535:-228.391,-21.3731,0	1/1:72:0,72:0:0:72:2562:-230.829,-21.6742,0
chr06	32175006	.	T	C	110597	PASS	AB=0.475167;ABP=20.6977;AC=137;AF=0.744565;AN=184;AO=5246;CIGAR=1X;DP=6997;DPB=6997;DPRA=25.619;EPP=11359.8;EPPR=3783.56;GTI=1;LEN=1;MEANALT=1.02198;MQM=59.6981;MQMR=59.9914;NS=92;NUMALT=1;ODDS=4.10669;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187165;QR=62583;RO=1749;RPL=5242;RPP=11359.8;RPPR=3783.56;RPR=4;RUN=1;SAF=0;SAP=11394.6;SAR=5246;SRF=0;SRP=3800.92;SRR=1749;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:14,13:14:504:13:468:-34.3242,0,-37.5703	0/1:129:53,76:53:1904:76:2736:-207.588,0,-132.805	0/1:129:62,67:62:2224:67:2377:-175.339,0,-161.591	1/1:114:0,114:0:0:114:4066:-366.121,-34.3174,0	1/1:67:0,67:0:0:67:2408:-216.972,-20.169,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:116:0,116:0:0:116:4143:-373.049,-34.9195,0	0/1:162:90,72:90:3216:72:2563:-182.145,0,-240.896	1/1:80:0,80:0:0:80:2857:-257.346,-24.0824,0	0/1:41:18,23:18:640:23:828:-62.4155,0,-45.5871	0/1:43:21,22:21:752:22:775:-57.1269,0,-55.062	1/1:46:0,46:0:0:46:1629:-146.868,-13.8474,0	1/1:55:0,55:0:0:55:1960:-176.66,-16.5567,0	0/1:85:55,30:55:1976:30:1076:-71.5552,0,-152.527	0/1:59:32,27:32:1148:27:963:-69.2252,0,-85.8691	1/1:26:0,26:0:0:26:919:-82.9803,-7.82678,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:42:0,42:0:0:42:1504:-135.636,-12.6433,0	0/1:24:12,12:12:428:12:432:-31.9965,0,-31.6341	0/1:102:55,47:55:1945:47:1684:-121.135,0,-144.574	1/1:153:0,152:0:0:152:5402:-485.997,-45.7566,0	1/1:77:0,77:0:0:77:2732:-246.064,-23.1793,0	0/1:86:30,56:30:1080:56:2016:-155.794,0,-71.6247	1/1:86:0,86:0:0:86:3075:-276.955,-25.8886,0	0/1:71:49,22:49:1751:22:780:-49.1499,0,-136.5	1/1:217:0,217:0:0:217:7758:-698.185,-65.3235,0	0/1:121:62,59:62:2228:59:2105:-153.181,0,-164.359	0/1:35:17,18:17:608:18:631:-46.5796,0,-44.516	0/1:137:80,57:80:2872:57:2044:-142.989,0,-217.475	0/1:132:60,72:60:2140:72:2566:-191.39,0,-153.132	0/1:94:48,46:48:1720:46:1627:-118.419,0,-126.789	0/1:9:4,5:4:144:5:180:-13.8381,0,-10.6043	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:163:85,78:85:3052:78:2774:-200.825,0,-225.841	1/1:199:1,198:1:36:198:7079:-633.528,-56.3067,0	0/1:41:21,20:21:752:20:708:-51.1445,0,-55.664	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:79:55,24:55:1967:24:860:-53.9405,0,-153.523	0/1:39:20,19:20:720:19:675:-49.3322,0,-53.3886	0/1:78:48,30:48:1704:30:1080:-74.0329,0,-130.163	0/1:54:30,24:30:1064:24:860:-61.4639,0,-79.816	1/1:44:0,44:0:0:44:1569:-141.5,-13.2453,0	1/1:86:0,86:0:0:86:3075:-276.971,-25.8886,0	0/1:78:31,47:31:1108:47:1675:-127.541,0,-76.5507	1/1:150:0,150:0:0:150:5352:-481.807,-45.1545,0	0/1:91:57,34:57:2048:34:1212:-81.9879,0,-157.198	0/1:108:58,50:58:2061:50:1792:-129.048,0,-153.248	1/1:149:1,148:1:36:148:5291:-472.666,-41.2552,0	0/1:6:5,1:5:180:1:32:-1.39313,0,-14.7459	1/1:123:0,123:0:0:123:4373:-393.562,-37.0267,0	0/1:47:17,30:17:608:30:1062:-81.7407,0,-40.9036	0/1:11:5,6:5:180:6:216:-16.4709,0,-13.2407	1/1:84:0,84:0:0:84:2998:-269.959,-25.2865,0	1/1:36:0,36:0:0:36:1296:-116.904,-10.8371,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:55:27,28:27:972:28:997:-73.4824,0,-71.2413	1/1:108:0,108:0:0:108:3854:-347.048,-32.5112,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:129:0,129:0:0:129:4612:-415.242,-38.8329,0	1/1:124:0,123:0:0:123:4408:-396.523,-37.0267,0	0/1:62:34,28:34:1220:28:969:-68.8506,0,-91.4429	0/1:61:35,26:35:1260:26:923:-65.0216,0,-95.3427	1/1:127:4,123:4:144:123:4392:-382.133,-24.9172,0	1/1:115:0,115:0:0:115:4103:-369.443,-34.6185,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:86:0,86:0:0:86:3064:-275.921,-25.8886,0	1/1:76:1,75:1:36:75:2675:-237.394,-19.28,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:94:0,94:0:0:94:3302:-297.35,-28.2968,0	0/1:61:45,16:45:1616:16:572:-33.4506,0,-127.367	1/1:105:0,105:0:0:105:3768:-339.271,-31.6082,0	0/1:131:69,62:69:2446:62:2203:-159.089,0,-180.957	0/1:88:42,46:42:1496:46:1648:-122.109,0,-108.444	1/1:66:0,66:0:0:66:2336:-210.483,-19.868,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:84:1,83:1:36:83:2973:-264.194,-21.6882,0	1/1:118:0,118:0:0:118:4235:-381.287,-35.5215,0	1/1:125:5,120:5:180:120:4283:-369.059,-21.0767,0	0/1:99:48,51:48:1709:51:1824:-134.631,0,-124.292	1/1:58:0,58:0:0:58:2084:-187.828,-17.4597,0	0/1:86:43,43:43:1544:43:1531:-112.191,0,-113.364	0/1:140:64,76:64:2288:76:2716:-202.521,0,-164.038	0/1:28:12,16:12:428:16:576:-43.7461,0,-30.43	0/1:64:35,29:35:1260:29:1036:-74.2847,0,-94.4396	1/1:50:0,50:0:0:50:1762:-158.841,-15.0515,0	0/1:20:8,12:8:284:12:419:-32.0128,0,-19.8828	0/1:69:39,30:39:1404:30:1055:-74.4844,0,-105.888	0/1:51:36,15:36:1288:15:532:-32.8606,0,-100.871	1/1:73:0,73:0:0:73:2603:-234.507,-21.9752,0	1/1:74:0,74:0:0:74:2635:-237.397,-22.2762,0
chr06	32208100	.	C	T	44979	PASS	AB=0.539171;ABP=52.1736;AC=47;AF=0.25;AN=188;AO=2002;CIGAR=1X;DP=7153;DPB=7153;DPRA=1.40457;EPP=4350.3;EPPR=11160;GTI=2;LEN=1;MEANALT=1.08475;MQM=48.5669;MQMR=56.6826;NS=94;NUMALT=1;ODDS=0.205505;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70982;QR=179306;RO=5138;RPL=960;RPP=10.3035;RPPR=29.849;RPR=1042;RUN=1;SAF=960;SAP=10.3035;SAR=1042;SRF=2443;SRP=29.849;SRR=2695;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:10,11:10:356:11:368:-26.716,0,-26.0409	0/1:77:36,41:36:1283:41:1468:-108.408,0,-92.4527	0/1:132:60,72:60:2144:72:2559:-189.225,0,-153.381	0/0:174:173,1:173:6052:1:36:0,-48.79,-539.817	0/0:34:33,0:33:1139:0:0:0,-9.93399,-102.129	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4099	0/0:64:64,0:64:2227:0:0:0,-19.2659,-199.905	0/1:123:64,59:64:2249:59:2103:-149.948,0,-165.031	0/0:71:71,0:71:2471:0:0:0,-21.3731,-221.244	0/1:95:39,56:39:1392:56:1995:-149.33,0,-96.473	0/1:89:43,46:43:1441:46:1613:-117.153,0,-102.812	0/0:89:88,1:88:3060:1:36:0,-23.2086,-271.244	0/0:86:86,0:86:2999:0:0:0,-25.8886,-269.306	0/1:91:45,46:45:1522:46:1626:-117.48,0,-109.211	0/1:81:45,36:45:1573:36:1263:-88.2908,0,-117.323	0/0:66:66,0:66:2302:0:0:0,-19.868,-206.416	0/0:96:96,0:96:3326:0:0:0,-28.8989,-298.085	0/0:78:78,0:78:2715:0:0:0,-23.4803,-242.362	0/1:45:21,24:21:739:24:856:-61.4535,0,-53.1877	0/1:67:28,39:28:982:39:1392:-104.143,0,-68.4767	0/0:103:101,1:101:3550:1:36:0,-27.6607,-315.951	0/0:38:37,1:37:1285:1:36:0,-7.86571,-112.255	0/1:61:26,35:26:894:35:1233:-92.1321,0,-62.2847	0/0:26:26,0:26:908:0:0:0,-7.82678,-81.8031	0/1:28:20,8:20:688:8:288:-17.7173,0,-53.7003	0/0:183:182,1:182:6411:1:36:0,-51.5097,-572.658	0/1:174:68,106:68:2396:106:3778:-283.177,0,-162.949	0/1:54:20,33:20:703:33:1138:-85.8226,0,-47.1539	0/1:137:70,67:70:2413:67:2373:-170.205,0,-176.171	0/1:90:37,53:37:1280:53:1864:-139.447,0,-88.2602	0/1:78:33,45:33:1148:45:1572:-117.169,0,-79.9432	0/1:6:3,3:3:99:3:97:-7.20472,0,-7.42694	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8161	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59142	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.504	0/1:234:118,116:118:4095:116:4121:-294.361,0,-297.89	0/0:83:83,0:83:2866:0:0:0,-24.9855,-257.807	0/1:97:47,50:47:1664:50:1783:-130.317,0,-120.184	0/1:2:1,1:1:36:1:36:-2.97671,0,-2.99621	0/1:116:44,72:44:1548:72:2565:-192.78,0,-104.545	0/1:39:17,22:17:608:22:784:-58.1872,0,-43.1883	0/1:86:34,52:34:1201:52:1826:-136.882,0,-82.2786	0/1:59:30,29:30:1051:29:1031:-73.0328,0,-77.0206	0/0:79:78,1:78:2703:1:36:0,-20.2026,-239.429	0/0:74:73,0:73:2530:0:0:0,-21.9752,-227.33	0/1:82:41,41:41:1444:41:1459:-104.961,0,-105.436	0/0:131:131,0:131:4595:0:0:0,-39.4349,-412.4	0/1:60:28,32:28:986:32:1141:-83.9711,0,-70.9703	0/1:107:50,57:50:1742:57:2027:-148.765,0,-124.658	0/0:69:69,0:69:2445:0:0:0,-20.7711,-220.181	0/1:4:3,1:3:108:1:36:-2.37465,0,-8.87105	0/0:70:70,0:70:2462:0:0:0,-21.0721,-221.538	0/1:35:15,20:15:512:20:715:-53.4633,0,-35.7804	0/1:9:4,5:4:140:5:176:-13.4368,0,-10.229	0/0:73:72,0:72:2528:0:0:0,-21.6742,-227.283	0/0:32:32,0:32:1101:0:0:0,-9.63296,-98.681	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7231	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:50:25,25:25:859:25:883:-63.9677,0,-62.1835	0/0:117:114,1:114:4003:1:36:0,-31.3687,-355.267	0/1:4:3,1:3:108:1:36:-2.37893,0,-8.86863	0/0:149:148,1:148:5184:1:36:0,-41.2747,-462.257	0/0:125:124,1:124:4358:1:36:0,-34.05,-387.742	0/1:63:37,26:37:1299:26:921:-63.8506,0,-97.8462	0/1:51:20,31:20:696:31:1090:-82.0686,0,-47.4775	0/0:79:78,0:78:2700:0:0:0,-23.4803,-242.863	0/0:81:79,2:79:2781:2:72:0,-17.5797,-243.554	0/0:54:54,0:54:1855:0:0:0,-16.2556,-166.835	0/0:58:57,0:57:2032:0:0:0,-17.1587,-182.385	0/0:82:82,0:82:2837:0:0:0,-24.6845,-254.403	0/1:9:4,5:4:140:5:180:-13.7824,0,-10.2281	0/0:68:67,0:67:2301:0:0:0,-20.169,-206.061	0/1:71:30,41:30:1044:41:1457:-109.177,0,-72.6734	0/0:90:90,0:90:3123:0:0:0,-27.0927,-280.743	0/1:169:82,87:82:2865:87:3086:-223.997,0,-206.943	0/1:53:20,33:20:720:33:1184:-90.2654,0,-48.9696	0/0:97:96,1:96:3395:1:36:0,-25.6169,-301.17	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4934	0/0:105:104,1:104:3658:1:36:0,-28.0217,-325.622	0/0:67:67,0:67:2337:0:0:0,-20.169,-209.949	0/0:123:123,0:123:4300:0:0:0,-37.0267,-386.358	0/1:113:62,51:62:2153:51:1804:-125.549,0,-158.868	0/0:95:95,0:95:3291:0:0:0,-28.5978,-296.149	0/1:110:58,52:58:2013:52:1828:-129.91,0,-148.077	0/1:174:75,98:75:2592:98:3512:-260.972,0,-180.458	0/1:55:20,35:20:708:35:1239:-93.6347,0,-47.3897	0/1:95:41,54:41:1381:54:1929:-143.747,0,-95.7207	0/0:105:105,0:105:3623:0:0:0,-31.6081,-325.598	0/1:57:29,28:29:1028:28:1000:-72.6017,0,-75.4404	0/1:128:52,74:52:1791:74:2610:-192.99,0,-122.892	0/1:108:38,70:38:1320:70:2469:-188.133,0,-86.4871	0/0:69:69,0:69:2404:0:0:0,-20.7711,-216.463	0/0:138:138,0:138:4760:0:0:0,-41.5421,-428.089
chr06	32341233	.	G	A	9509.16	PASS	AB=0.381138;ABP=222.916;AC=43;AF=0.231183;AN=186;AO=689;CIGAR=1X;DP=4513;DPB=4513;DPRA=0.916162;EPP=1499.15;EPPR=8289.36;GTI=4;LEN=1;MEANALT=1;MQM=59.9942;MQMR=59.9974;NS=93;NUMALT=1;ODDS=1.41677;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24495;QR=136604;RO=3824;RPL=689;RPP=1499.15;RPPR=8289.36;RPR=0;RUN=1;SAF=0;SAP=1499.15;SAR=689;SRF=0;SRP=8306.72;SRR=3824;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:70:51,19:51:1828:19:684:-40.8182,0,-143.729	0/1:69:37,32:37:1332:32:1144:-82.4984,0,-99.4113	0/0:115:115,0:115:4109:0:0:0,-34.6184,-369.994	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:74:48,26:48:1707:26:932:-61.9226,0,-131.639	0/0:28:27,1:27:960:1:36:0,-4.83056,-83.118	0/1:74:48,26:48:1720:26:928:-61.562,0,-132.809	0/1:20:11,9:11:396:9:316:-22.7583,0,-29.9621	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:25:14,11:14:504:11:378:-26.8239,0,-38.1723	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.303	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:69:46,23:46:1652:23:813:-52.7157,0,-128.197	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/1:36:9,27:9:320:27:937:-73.8041,0,-18.3053	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:29:10,19:10:352:19:680:-52.7993,0,-23.2883	0/0:194:194,0:194:6920:0:0:0,-58.3998,-622.87	0/1:58:34,24:34:1201:24:860:-60.2621,0,-90.9339	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:98:62,36:62:2196:36:1292:-87.0828,0,-168.402	0/1:64:42,22:42:1508:22:784:-51.618,0,-116.749	0/1:55:39,16:39:1400:16:568:-34.8952,0,-109.742	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:84:59,25:59:2107:25:884:-54.5918,0,-164.612	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.099	0/1:31:26,5:26:928:5:180:-7.22014,0,-74.5063	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:55:35,20:35:1229:20:720:-48.5721,0,-94.3552	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:61:28,33:28:1000:33:1154:-85.7994,0,-71.9525	0/1:30:16,14:16:568:14:504:-36.6672,0,-42.421	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:34:14,20:14:492:20:712:-54.1716,0,-34.3773	0/0:92:92,0:92:3277:0:0:0,-27.6948,-295.149	0/1:40:24,16:24:856:16:576:-40.1338,0,-65.3199	0/1:62:29,33:29:1032:33:1176:-87.4839,0,-74.5296	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:86:86,0:86:3057:0:0:0,-25.8886,-275.348	0/1:22:13,9:13:464:9:320:-22.5197,0,-35.4748	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:22:22,0:22:771:0:0:0,-6.62266,-69.7103	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:36:26,10:26:932:10:345:-20.5437,0,-73.3618	0/0:83:83,0:83:2960:0:0:0,-24.9855,-266.631	.:.:.:.:.:.:.:.	0/0:167:166,1:166:5937:1:36:0,-46.6737,-530.839	0/0:107:104,3:104:3720:3:108:0,-22.135,-324.926	0/1:48:35,13:35:1252:13:453:-26.6502,0,-98.5356	0/1:29:15,14:15:532:14:504:-36.9682,0,-39.4832	0/0:88:87,1:87:3116:1:36:0,-22.8924,-277.068	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.585	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/1:21:12,9:12:428:9:309:-21.8191,0,-32.5372	0/0:84:84,0:84:2969:0:0:0,-25.2865,-267.441	0/1:37:27,10:27:968:10:360:-21.6062,0,-76.2993	0/0:90:90,0:90:3221:0:0:0,-27.0927,-290.11	0/1:95:55,40:55:1957:40:1417:-99.2275,0,-147.806	0/1:46:24,22:24:860:22:788:-57.3974,0,-63.8745	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/0:88:88,0:88:3123:0:0:0,-26.4906,-281.298	0/1:51:35,16:35:1260:16:572:-36.4609,0,-98.353	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/1:27:19,8:19:680:8:284:-17.7755,0,-53.4014	0/1:38:27,11:27:953:11:388:-23.8182,0,-74.6442	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/1:28:19,9:19:676:9:320:-20.7135,0,-52.7392	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:15:11,4:11:387:4:144:-8.79817,0,-30.6505	0/1:38:25,13:25:900:13:464:-30.6584,0,-69.8819	0/1:22:14,8:14:500:8:273:-18.2775,0,-38.7135	0/0:94:94,0:94:3367:0:0:0,-28.2968,-303.245	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115
chr06	32341244	.	T	C	10176.3	PASS	AB=0.39181;ABP=186.727;AC=43;AF=0.231183;AN=186;AO=715;CIGAR=1X;DP=4518;DPB=4518;DPRA=0.941659;EPP=1555.61;EPPR=8252.44;GTI=4;LEN=1;MEANALT=1;MQM=59.9706;MQMR=59.9974;NS=93;NUMALT=1;ODDS=1.47904;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25551;QR=135619;RO=3803;RPL=715;RPP=1555.61;RPPR=8252.44;RPR=0;RUN=1;SAF=0;SAP=1555.61;SAR=715;SRF=0;SRP=8261.12;SRR=3803;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:9,2:9:316:2:72:-3.52539,0,-25.4675	0/1:69:50,19:50:1770:19:676:-40.3969,0,-138.808	0/1:70:37,33:37:1328:33:1180:-85.4359,0,-98.7501	0/0:114:114,0:114:4100:0:0:0,-34.3174,-369.183	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/1:77:51,26:51:1816:26:917:-59.6653,0,-140.542	0/0:27:26,1:26:928:1:36:0,-4.52953,-80.24	0/1:73:46,27:46:1656:27:960:-64.7405,0,-127.353	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:28:15,13:15:536:13:460:-33.3065,0,-40.146	0/1:25:16,9:16:572:9:324:-21.9801,0,-44.2877	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/1:68:44,24:44:1568:24:864:-57.6102,0,-120.942	0/0:54:54,0:54:1909:0:0:0,-16.2556,-172.086	0/0:73:73,0:73:2579:0:0:0,-21.9752,-232.355	0/1:37:9,28:9:324:28:995:-78.7251,0,-18.3677	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/1:29:10,19:10:356:19:684:-53.1605,0,-23.6514	0/0:196:196,0:196:6982:0:0:0,-59.0019,-628.445	0/1:57:33,24:33:1188:24:864:-60.9239,0,-90.0699	0/1:10:8,2:8:288:2:68:-3.44741,0,-23.2571	0/1:100:61,39:61:2188:39:1381:-94.4838,0,-167.083	0/1:64:41,23:41:1449:23:824:-55.2174,0,-111.438	0/1:55:37,18:37:1332:18:640:-41.3727,0,-103.625	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:81:57,24:57:2021:24:856:-52.9777,0,-157.778	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.35	0/1:31:26,5:26:932:5:180:-7.22014,0,-74.8669	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:57:36,21:36:1273:21:752:-50.8475,0,-97.7122	0/1:16:12,4:12:428:4:144:-8.49714,0,-34.0423	0/1:62:28,34:28:996:34:1197:-89.3579,0,-71.291	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:34:14,20:14:500:20:720:-54.8938,0,-35.1012	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.584	0/1:39:23,16:23:824:16:576:-40.4348,0,-62.7431	0/1:65:30,35:30:1053:35:1260:-94.1385,0,-75.5116	0/0:94:94,0:94:3259:0:0:0,-28.2968,-293.526	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.581	0/1:25:15,10:15:536:10:356:-24.8555,0,-41.0491	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:38:26,12:26:932:12:432:-27.7821,0,-72.7597	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	.:.:.:.:.:.:.:.	0/0:166:165,1:165:5783:1:36:0,-46.3727,-516.989	0/0:105:102,3:102:3660:3:108:0,-21.533,-319.528	0/1:50:35,15:35:1256:15:532:-33.1616,0,-98.2938	0/1:28:14,14:14:504:14:489:-35.9101,0,-37.2693	0/0:92:91,1:91:3252:1:36:0,-24.0965,-289.303	0/0:102:102,0:102:3633:0:0:0,-30.7051,-327.175	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:67:66,1:66:2364:1:36:0,-16.5707,-209.42	0/1:20:12,8:12:424:8:284:-19.8828,0,-32.4758	0/0:86:86,0:86:3069:0:0:0,-25.8886,-276.437	0/1:38:29,9:29:1044:9:324:-18.0667,0,-82.8357	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/1:93:54,39:54:1936:39:1396:-97.9433,0,-146.521	0/1:47:25,22:25:888:22:792:-57.4573,0,-66.0906	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:39:39,0:39:1381:0:0:0,-11.7402,-124.587	0/0:88:88,0:88:3110:0:0:0,-26.4906,-280.126	0/1:51:33,18:33:1184:18:648:-43.2994,0,-91.5158	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:28:19,9:19:669:9:324:-21.077,0,-52.1051	0/1:40:28,12:28:1004:12:432:-27.18,0,-78.6347	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	0/1:28:19,9:19:684:9:324:-21.077,0,-53.4615	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/1:38:24,14:24:848:14:504:-34.259,0,-65.2005	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/0:95:95,0:95:3385:0:0:0,-28.5978,-304.865	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232
chr06	32389439	.	T	A	79626.9	PASS	AB=0.485652;ABP=7.12288;AC=139;AF=0.747312;AN=186;AO=3846;CIGAR=1X;DP=5039;DPB=5039;DPRA=13.6821;EPP=8337.13;EPPR=2582.73;GTI=2;LEN=1;MEANALT=1.01087;MQM=47.1529;MQMR=59.0084;NS=93;NUMALT=1;ODDS=0.518338;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137116;QR=42622;RO=1192;RPL=3844;RPP=8337.13;RPPR=2582.73;RPR=2;RUN=1;SAF=3846;SAP=8354.49;SAR=0;SRF=1192;SRP=2591.41;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:15,15:15:532:15:536:-38.8937,0,-39.1762	0/1:54:26,28:26:936:28:1003:-72.4409,0,-68.2111	0/1:95:60,35:60:2156:35:1241:-81.2644,0,-165.617	1/1:118:0,118:0:0:118:4194:-373.799,-35.5215,0	1/1:37:0,37:0:0:37:1328:-118.3,-11.1381,0	1/1:37:0,37:0:0:37:1321:-116.725,-11.1381,0	1/1:55:0,55:0:0:55:1976:-176.554,-16.5567,0	0/1:84:36,48:36:1277:48:1705:-126.151,0,-89.8295	1/1:57:0,57:0:0:57:2044:-180.786,-17.1587,0	0/1:44:23,21:23:828:21:737:-52.4909,0,-61.5891	0/1:19:9,10:9:324:10:360:-26.8472,0,-23.7863	1/1:46:0,46:0:0:46:1656:-146.718,-13.8474,0	1/1:30:0,30:0:0:30:1071:-95.1715,-9.0309,0	0/1:38:23,15:23:828:15:536:-36.5685,0,-63.4042	0/1:22:13,9:13:468:9:324:-22.7232,0,-35.837	1/1:20:0,20:0:0:20:720:-64.1382,-6.0206,0	1/1:10:0,10:0:0:10:356:-31.9442,-3.0103,0	1/1:16:0,16:0:0:16:576:-50.7581,-4.81648,0	0/1:9:4,5:4:140:5:180:-13.1341,0,-10.2222	0/1:128:62,66:62:2213:66:2361:-173.06,0,-160.873	1/1:115:0,115:0:0:115:4113:-363.75,-34.6185,0	1/1:61:0,61:0:0:61:2150:-192.771,-18.3628,0	0/1:74:31,42:31:1108:42:1508:-112.853,0,-77.6908	1/1:62:0,62:0:0:62:2224:-197.711,-18.6639,0	0/1:54:25,29:25:896:29:1044:-76.1786,0,-64.6478	1/1:163:1,162:1:36:162:5696:-504.179,-45.4696,0	0/1:131:77,54:77:2743:54:1935:-132.613,0,-206.819	0/1:6:3,3:3:104:3:108:-8.18089,0,-7.89472	0/1:168:86,82:86:3088:82:2929:-210.905,0,-227.538	0/1:92:42,50:42:1474:50:1792:-130.685,0,-104.977	0/1:59:26,33:26:932:33:1180:-87.6817,0,-66.3142	0/1:6:5,1:5:180:1:36:-1.76063,0,-14.7459	1/1:19:0,19:0:0:19:669:-59.6147,-5.71957,0	1/1:16:0,16:0:0:16:572:-50.2231,-4.81648,0	1/1:7:0,7:0:0:7:237:-21.3837,-2.10721,0	1/1:15:0,15:0:0:15:540:-47.6743,-4.51545,0	0/1:70:43,27:43:1544:27:972:-66.0716,0,-118.121	1/1:84:0,84:0:0:84:2986:-265.249,-25.2865,0	0/1:17:8,9:8:284:9:324:-23.9553,0,-20.7079	.:.:.:.:.:.:.:.	0/1:71:43,28:43:1536:28:989:-66.675,0,-115.58	0/1:6:3,3:3:108:3:108:-8.18089,0,-8.26899	0/1:104:55,49:55:1965:49:1749:-123.952,0,-145.702	0/1:9:5,4:5:180:4:140:-10.1739,0,-13.8428	1/1:14:0,14:0:0:14:489:-44.1083,-4.21442,0	1/1:98:0,98:0:0:98:3490:-312.931,-29.5009,0	0/1:59:27,32:27:953:32:1142:-82.8606,0,-68.1754	1/1:89:0,89:0:0:89:3153:-280.473,-26.7917,0	0/1:48:26,22:26:932:22:792:-56.7498,0,-69.7494	0/1:99:52,47:52:1868:47:1669:-119.904,0,-138.597	1/1:84:0,84:0:0:84:3008:-265.813,-25.2865,0	0/1:3:2,1:2:72:1:36:-2.67568,0,-5.93363	1/1:63:0,63:0:0:63:2268:-201.311,-18.9649,0	0/1:70:40,30:40:1440:30:1065:-74.7123,0,-108.779	0/1:5:1,4:1:36:4:144:-11.67,0,-2.09268	1/1:90:0,90:0:0:90:3217:-285.178,-27.0927,0	1/1:22:0,22:0:0:22:788:-70.1972,-6.62266,0	1/1:5:0,5:0:0:5:180:-16.4978,-1.50515,0	1/1:12:0,12:0:0:12:432:-39.0927,-3.61236,0	0/1:79:39,40:39:1384:40:1440:-104.502,0,-101.035	1/1:38:1,37:1:36:37:1328:-114.312,-7.84087,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9427	1/1:84:0,84:0:0:84:2945:-263.835,-25.2865,0	1/1:103:1,102:1:36:102:3608:-318.633,-27.4078,0	0/1:41:24,17:24:864:17:612:-41.8831,0,-65.6546	0/1:40:22,18:22:788:18:618:-43.6017,0,-59.2036	1/1:151:3,148:3:108:148:5286:-457.467,-35.3804,0	1/1:151:0,151:0:0:151:5360:-477.825,-45.4555,0	1/1:13:0,13:0:0:13:468:-41.3834,-3.91339,0	1/1:41:0,41:0:0:41:1476:-131.204,-12.3422,0	1/1:31:0,31:0:0:31:1116:-100.123,-9.33193,0	0/1:11:7,4:7:248:4:144:-9.93011,0,-19.3529	1/1:98:0,98:0:0:98:3466:-303.612,-29.5009,0	0/1:57:33,24:33:1188:24:841:-57.8393,0,-88.6898	1/1:116:0,116:0:0:116:4126:-365.428,-34.9195,0	0/1:78:34,44:34:1193:44:1569:-117.251,0,-84.0026	0/1:73:33,40:33:1188:40:1440:-104.477,0,-84.826	1/1:59:0,59:0:0:59:2120:-187.676,-17.7608,0	1/1:10:0,10:0:0:10:360:-32.2665,-3.0103,0	1/1:49:0,49:0:0:49:1724:-153.642,-14.7505,0	1/1:67:0,67:0:0:67:2374:-210.798,-20.169,0	1/1:138:0,138:0:0:138:4960:-441.016,-41.5421,0	0/1:40:25,15:25:896:15:540:-36.324,0,-68.9192	1/1:32:0,32:0:0:32:1148:-103.038,-9.63296,0	0/1:14:4,10:4:144:10:360:-28.3524,0,-9.0992	0/1:50:17,33:17:612:33:1184:-89.4955,0,-40.3619	0/1:13:6,7:6:216:7:248:-17.9823,0,-15.8742	0/1:28:14,14:14:504:14:500:-35.8985,0,-37.2189	1/1:26:0,26:0:0:26:932:-82.6094,-7.82678,0	0/1:25:11,14:11:396:14:500:-37.4112,0,-28.3136	0/1:50:26,24:26:924:24:860:-61.1893,0,-68.1239	0/1:27:16,11:16:576:11:388:-26.9556,0,-44.0295	1/1:59:0,59:0:0:59:2120:-187.225,-17.7608,0	1/1:24:0,24:0:0:24:856:-76.948,-7.22472,0
chr06	32412157	.	A	G	84262.8	PASS	AB=0.468525;ABP=71.2201;AC=46;AF=0.247312;AN=186;AO=3746;CIGAR=1X;DP=16433;DPB=16433;DPRA=1.26307;EPP=90.2773;EPPR=65.6779;GTI=1;LEN=1;MEANALT=1.06667;MQM=51.7787;MQMR=50.9483;NS=93;NUMALT=1;ODDS=5.63797;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133522;QR=454224;RO=12683;RPL=3202;RPP=4098.41;RPPR=13647.1;RPR=544;RUN=1;SAF=1137;SAP=1259.05;SAR=2609;SRF=4766;SRP=1702.93;SRR=7917;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:23,19:23:824:19:684:-49.0296,0,-61.6239	0/1:214:115,98:115:4109:98:3494:-250.339,0,-305.659	0/1:105:54,51:54:1940:51:1792:-129.951,0,-143.268	0/0:570:570,0:570:20406:0:0:0,-171.587,-1730.9	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.702	0/0:83:82,1:82:2944:1:36:0,-21.3872,-261.577	0/0:238:238,0:238:8492:0:0:0,-71.6451,-737.238	0/1:239:122,117:122:4372:117:4172:-303.671,0,-321.618	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/1:199:96,103:96:3456:103:3684:-259.629,0,-236.331	0/1:147:78,69:78:2792:69:2448:-155.23,0,-191.955	0/0:79:79,0:79:2791:0:0:0,-23.7814,-251.429	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:71:35,36:35:1256:36:1296:-95.5247,0,-91.9722	0/1:156:78,78:78:2792:78:2792:-186.466,0,-194.518	0/0:68:68,0:68:2436:0:0:0,-20.47,-218.045	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.542	0/1:38:23,15:23:819:15:540:-35.2785,0,-62.5924	0/1:1205:629,575:629:22563:575:20556:-1451.66,0,-1631.5	0/0:171:171,0:171:6096:0:0:0,-51.4761,-548.742	0/0:180:180,0:180:6443:0:0:0,-54.1854,-556.219	0/1:173:96,77:96:3456:77:2752:-175.3,0,-237.169	0/0:183:181,2:181:6481:2:72:0,-48.2518,-575.086	0/1:57:30,27:30:1061:27:963:-69.8272,0,-74.0142	0/0:635:635,0:635:22689:0:0:0,-191.154,-1967.48	0/1:265:153,112:153:5468:112:3981:-278.704,0,-412.472	0/1:48:26,22:26:928:22:788:-56.7949,0,-69.3888	0/1:601:302,299:302:10836:299:10627:-699.054,0,-758.652	0/1:121:62,59:62:2216:59:2110:-153.744,0,-163.28	0/1:248:132,116:132:4712:116:4132:-277.232,0,-326.178	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:471:249,222:249:8926:222:7904:-528.031,0,-635.937	0/0:136:136,0:136:4855:0:0:0,-40.9401,-437.104	0/1:40:19,21:19:684:21:756:-56.326,0,-49.8491	.:.:.:.:.:.:.:.	0/1:297:168,129:168:6032:129:4616:-326.197,0,-452.721	0/1:40:15,25:15:540:25:896:-68.9192,0,-36.8953	0/1:151:82,69:82:2932:69:2459:-176.108,0,-218.659	0/1:127:69,58:69:2472:58:2076:-137.647,0,-175.448	0/0:158:158,0:158:5653:0:0:0,-47.5627,-488.665	0/0:222:221,1:221:7912:1:36:0,-63.705,-685.794	0/1:92:66,26:66:2372:26:936:-56.8647,0,-186.043	0/0:456:456,0:456:16300:0:0:0,-137.27,-1398.74	0/1:248:143,105:143:5120:105:3756:-248.948,0,-368.69	0/1:377:233,144:233:8348:144:5148:-322.804,0,-601.837	0/0:238:236,2:236:8460:2:72:0,-64.8084,-738.567	0/1:25:17,8:17:612:8:288:-16.1186,0,-44.6347	0/0:137:137,0:137:4928:0:0:0,-41.2411,-443.668	0/1:119:72,47:72:2563:47:1647:-102.719,0,-184.755	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/0:103:99,4:99:3552:4:144:0,-18.832,-284.435	0/0:24:24,0:24:851:0:0:0,-7.22472,-74.463	0/0:38:37,1:37:1328:1:36:0,-8.3155,-113.679	0/1:34:18,16:18:648:16:576:-41.9396,0,-48.4169	0/0:189:187,2:187:6681:2:72:0,-50.0579,-569.641	0/1:27:14,13:14:504:13:460:-31.355,0,-36.213	0/0:445:444,1:444:15878:1:36:0,-130.835,-1375.42	0/0:313:310,3:310:11120:3:93:0,-85.5472,-921.584	0/1:94:50,43:50:1796:43:1532:-109.818,0,-133.567	0/1:180:85,95:85:3052:95:3380:-226.999,0,-206.17	0/0:459:452,7:452:16164:7:252:0,-117.021,-1342.56	0/0:298:298,0:298:10696:0:0:0,-89.7069,-915.627	0/0:22:22,0:22:792:0:0:0,-6.62266,-67.2396	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.79	0/0:168:168,0:168:6028:0:0:0,-50.573,-529.951	0/1:52:29,23:29:1031:23:820:-52.1442,0,-70.7551	0/0:70:68,2:68:2429:2:72:0,-14.2354,-211.982	0/1:106:57,49:57:2052:49:1720:-123.172,0,-153.042	0/0:166:166,0:166:5937:0:0:0,-49.971,-534.437	0/1:429:226,203:226:8120:203:7248:-483.41,0,-564.385	0/1:61:27,34:27:972:34:1216:-91.2939,0,-69.3901	0/0:140:140,0:140:5028:0:0:0,-42.1442,-452.664	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:154:154,0:154:5527:0:0:0,-46.3586,-494.655	0/0:146:145,1:145:5196:1:36:0,-40.3521,-464.136	0/0:640:636,4:636:22787:4:140:0,-181.403,-1922.3	0/1:165:73,92:73:2620:92:3268:-233.889,0,-178.952	0/0:184:184,0:184:6592:0:0:0,-55.3895,-556.086	0/1:153:79,74:79:2832:74:2617:-182.376,0,-202.026	0/1:297:157,140:157:5628:140:4978:-336.732,0,-400.349	0/1:48:24,24:24:860:24:864:-63.6331,0,-63.2724	0/1:82:42,40:42:1504:40:1407:-102.239,0,-110.97	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:34:18,16:18:648:16:561:-40.5825,0,-48.4169	0/1:71:52,19:52:1849:19:684:-40.5164,0,-145.315	0/1:159:61,98:61:2184:98:3481:-246.165,0,-139.857	0/0:392:391,1:391:14012:1:36:0,-114.405,-1174.63	0/0:266:266,0:266:9521:0:0:0,-80.074,-825.334
chr06	32415509	.	A	T	112236	PASS	AB=0.490552;ABP=13.5963;AC=95;AF=0.505319;AN=188;AO=6708;CIGAR=1X;DP=13668;DPB=13668;DPRA=36.7312;EPP=14569.2;EPPR=15105.6;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9697;MQMR=59.9698;NS=94;NUMALT=1;ODDS=4.90549;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=239014;QR=248847;RO=6955;RPL=0;RPP=14569.2;RPPR=15105.6;RPR=6708;RUN=1;SAF=6708;SAP=14569.2;SAR=0;SRF=6955;SRP=15105.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:119:51,68:51:1817:68:2420:-182.234,0,-127.979	0/1:130:74,56:74:2656:56:1988:-140.061,0,-200.152	0/1:214:113,101:113:4056:101:3596:-259.428,0,-300.806	0/1:348:159,189:159:5701:189:6737:-501.649,0,-408.446	0/1:75:41,34:41:1476:34:1199:-85.6375,0,-110.559	0/1:61:30,31:30:1061:31:1116:-82.3889,0,-77.4365	0/1:185:98,87:98:3516:87:3081:-221.828,0,-260.959	0/1:240:132,108:132:4744:108:3852:-274.403,0,-354.809	0/1:216:113,103:113:4041:103:3688:-267.1,0,-298.853	0/1:162:74,88:74:2656:88:3121:-232.348,0,-190.519	0/1:69:22,47:22:792:47:1684:-131.076,0,-50.8346	0/1:192:90,102:90:3236:102:3651:-270.996,0,-233.663	0/1:136:76,60:76:2724:60:2143:-152.197,0,-204.463	0/1:73:39,34:39:1404:34:1199:-86.235,0,-104.684	0/1:168:86,82:86:3092:82:2940:-214.261,0,-227.934	0/1:89:44,45:44:1580:45:1616:-118.938,0,-115.7	0/1:44:18,26:18:648:26:932:-70.9535,0,-45.4066	0/1:53:27,26:27:972:26:928:-67.8837,0,-71.8433	0/1:49:32,17:32:1152:17:604:-39.9401,0,-89.2397	0/1:173:89,84:89:3196:84:2998:-217.974,0,-235.784	0/1:266:115,151:115:4136:151:5380:-404.261,0,-292.348	0/1:132:63,69:63:2264:69:2460:-181.919,0,-164.286	0/1:211:106,105:106:3804:105:3744:-273.644,0,-279.04	0/1:117:53,64:53:1900:64:2257:-168.172,0,-136.057	0/1:165:80,85:80:2880:85:3036:-223.801,0,-209.766	0/1:323:206,117:206:7234:117:4183:-279.419,0,-553.881	0/1:430:220,209:220:7900:209:7456:-541.584,0,-581.52	0/1:57:32,24:32:1152:24:860:-60.5044,0,-86.7726	0/1:435:210,225:210:7483:225:7983:-587.548,0,-542.564	0/1:199:108,91:108:3861:91:3236:-231.557,0,-287.773	0/1:164:92,72:92:3292:72:2572:-182.361,0,-247.131	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:42:19,23:19:684:23:820:-61.4793,0,-49.2471	0/1:9:3,6:3:93:6:212:-16.7155,0,-5.96746	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:21:5,16:5:180:16:568:-45.1302,0,-10.2304	0/1:376:191,184:191:6836:184:6562:-477.417,0,-502.062	0/1:215:118,97:118:4195:97:3468:-247.611,0,-313.007	0/1:71:33,38:33:1188:38:1356:-100.967,0,-85.8551	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:143:76,67:76:2720:67:2383:-171.68,0,-201.986	0/1:45:29,16:29:1044:16:565:-37.6332,0,-80.7285	0/1:214:128,86:128:4577:86:3080:-213.008,0,-347.674	0/1:91:44,47:44:1576:47:1675:-123.643,0,-114.738	0/1:98:42,56:42:1504:56:1988:-149.692,0,-106.154	0/1:228:112,116:112:4028:116:4128:-303.07,0,-294.072	0/1:231:105,126:105:3776:126:4515:-336.979,0,-270.49	0/1:287:153,134:153:5428:134:4773:-343.332,0,-402.252	0/1:159:77,82:77:2730:82:2928:-215.891,0,-198.077	0/1:138:70,68:70:2516:68:2421:-176.602,0,-185.093	0/1:61:36,25:36:1292:25:880:-61.1547,0,-98.2209	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:171:93,78:93:3325:78:2764:-197.527,0,-247.989	0/1:74:42,32:42:1504:32:1144:-80.9933,0,-113.378	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:224:123,101:123:4359:101:3594:-256.149,0,-325.053	0/1:84:42,42:42:1512:42:1496:-109.648,0,-111.088	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:30:16,14:16:576:14:500:-36.3053,0,-43.1441	0/1:135:63,72:63:2241:72:2541:-188.17,0,-161.313	0/1:149:71,78:71:2541:78:2792:-206.667,0,-184.086	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/1:236:133,103:133:4735:103:3700:-262.158,0,-355.263	0/1:249:113,136:113:4056:136:4867:-363.226,0,-290.27	0/1:84:45,39:45:1620:39:1400:-101.013,0,-120.803	0/1:147:76,71:76:2728:71:2536:-184.24,0,-201.483	0/1:312:146,166:146:5233:166:5924:-439.35,0,-377.184	0/1:272:121,151:121:4299:151:5410:-405.15,0,-305.204	0/1:48:20,28:20:720:28:1000:-75.8659,0,-50.6793	0/1:87:46,41:46:1656:41:1451:-104.696,0,-123.139	0/1:90:49,41:49:1734:41:1460:-104.603,0,-129.248	0/1:40:15,25:15:540:25:900:-69.2798,0,-36.8953	0/1:239:109,130:109:3905:130:4601:-342.298,0,-279.695	0/1:137:84,53:84:2993:53:1877:-127.807,0,-228.076	0/1:224:110,114:110:3937:114:4066:-298.694,0,-287.09	0/1:271:160,111:160:5744:111:3964:-275.373,0,-435.495	0/1:159:65,94:65:2317:94:3368:-255.472,0,-160.925	0/1:169:77,92:77:2745:92:3273:-243.917,0,-196.417	0/1:9:3,6:3:108:6:204:-15.983,0,-7.3659	0/1:181:91,90:91:3245:90:3208:-234.44,0,-237.784	0/1:151:74,77:74:2641:77:2700:-197.789,0,-192.479	0/1:329:155,174:155:5564:174:6197:-458.791,0,-401.843	0/1:141:74,66:74:2648:66:2359:-170.059,0,-196.063	0/1:109:64,45:64:2300:45:1616:-112.918,0,-174.449	0/1:83:47,36:47:1673:36:1284:-90.8779,0,-125.168	0/1:249:120,128:120:4297:128:4563:-335.734,0,-311.7	0/1:48:27,21:27:968:21:738:-52.2919,0,-72.9879	0/1:118:63,55:63:2259:55:1946:-139.893,0,-168.05	0/1:119:71,48:71:2548:48:1715:-118.813,0,-193.748	0/1:49:24,25:24:864:25:871:-63.9504,0,-63.3321	0/1:92:44,48:44:1580:48:1701:-125.679,0,-114.797	0/1:136:65,71:65:2336:71:2520:-186.11,0,-169.545	0/1:230:138,92:138:4933:92:3256:-22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chr06	32415523	.	C	A	10177.4	PASS	AB=0.216753;ABP=4462.22;AC=44;AF=0.234043;AN=188;AO=1392;CIGAR=1X;DP=13562;DPB=13562;DPRA=1.13216;EPP=3025.7;EPPR=26025.3;GTI=14;LEN=1;MEANALT=1.04082;MQM=59.9562;MQMR=59.9707;NS=94;NUMALT=1;ODDS=1.63586;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49341;QR=434318;RO=12167;RPL=0;RPP=3025.7;RPPR=26033.9;RPR=1392;RUN=1;SAF=1392;SAP=3025.7;SAR=0;SRF=12166;SRP=26414.6;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:115:71,44:71:2540:44:1576:-107.513,0,-194.224	0/1:125:108,17:108:3854:17:608:-17.4233,0,-309.427	0/1:209:169,40:169:6042:40:1423:-65.4521,0,-480.968	0/0:348:348,0:348:12414:0:0:0,-104.758,-1117.1	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.116	0/0:61:61,0:61:2160:0:0:0,-18.3628,-194.665	0/0:182:182,0:182:6520:0:0:0,-54.7875,-586.883	0/1:236:195,41:195:6979:41:1458:-60.4422,0,-557.067	0/0:213:213,0:213:7610:0:0:0,-64.1194,-684.935	0/1:160:130,30:130:4634:30:1053:-46.9114,0,-369.059	0/1:69:48,21:48:1715:21:736:-45.7913,0,-133.864	0/0:196:196,0:196:6994:0:0:0,-59.0019,-629.525	0/0:140:140,0:140:4985:0:0:0,-42.1442,-448.799	0/1:72:58,14:58:2080:14:504:-24.0239,0,-165.792	0/1:165:130,35:130:4664:35:1252:-63.3151,0,-370.251	0/0:89:89,0:89:3191:0:0:0,-26.7917,-287.412	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:49:42,7:42:1503:7:244:-7.54839,0,-120.813	0/1:170:134,36:134:4783:36:1280:-64.3281,0,-379.449	0/0:264:264,0:264:9409:0:0:0,-79.4719,-846.774	0/0:133:133,0:133:4741:0:0:0,-40.037,-426.849	0/1:206:162,44:162:5778:44:1548:-77.5996,0,-458.124	0/0:119:119,0:119:4263:0:0:0,-35.8226,-383.847	0/1:162:124,38:124:4431:38:1360:-73.9337,0,-350.195	0/0:320:320,0:320:11441:0:0:0,-96.3296,-1029.57	0/1:424:330,93:330:11763:93:3328:-172.042,0,-930.84	0/1:58:42,16:42:1500:16:568:-33.9921,0,-117.835	0/1:433:331,102:331:11815:102:3628:-196.381,0,-932.867	0/1:196:162,34:162:5770:34:1220:-51.1049,0,-460.409	0/1:161:133,28:133:4732:28:973:-39.4142,0,-377.574	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:41:40,1:40:1423:1:36:0,-8.74395,-124.768	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:20:20,0:20:693:0:0:0,-6.0206,-62.6894	0/1:363:283,80:283:10140:80:2823:-145.034,0,-803.256	0/0:215:214,1:214:7582:1:36:0,-61.1232,-678.828	0/1:70:56,14:56:2008:14:500:-24.2641,0,-159.921	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:144:115,29:115:4100:29:1036:-50.2056,0,-325.718	0/1:43:38,5:38:1368:5:168:-2.50607,0,-110.477	0/1:208:184,24:184:6565:24:855:-14.6559,0,-528.308	0/1:92:66,26:66:2368:26:932:-56.5041,0,-185.683	0/0:97:97,0:97:3438:0:0:0,-29.1999,-309.635	0/0:227:227,0:227:8078:0:0:0,-68.3338,-727.041	0/1:228:171,57:171:6127:57:2032:-114.518,0,-482.889	0/0:286:286,0:286:10200:0:0:0,-86.0946,-917.93	0/1:159:121,38:121:4331:38:1315:-70.7795,0,-342.101	0/1:136:106,30:106:3774:30:1044:-53.3269,0,-298.92	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:169:169,0:169:6028:0:0:0,-50.8741,-542.624	0/1:72:61,11:61:2183:11:392:-13.9459,0,-175.061	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:232:231,1:231:8194:1:21:0,-67.739,-734.89	0/0:88:88,0:88:3133:0:0:0,-26.4906,-282.195	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:30:30,0:30:1057:0:0:0,-9.0309,-95.439	0/1:132:100,32:100:3561:32:1126:-61.9043,0,-280.957	0/0:149:149,0:149:5310:0:0:0,-44.8535,-478.036	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:235:235,0:235:8376:0:0:0,-70.742,-753.848	0/0:247:247,0:247:8831:0:0:0,-74.3544,-794.777	0/1:86:71,15:71:2548:15:517:-20.966,0,-203.682	0/1:146:110,36:110:3940:36:1295:-72.9036,0,-310.813	0/0:312:312,0:312:11145:0:0:0,-93.9214,-1002.94	0/0:270:269,1:269:9579:1:36:0,-77.6798,-858.471	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:86:86,0:86:3049:0:0:0,-25.8886,-274.64	0/0:93:93,0:93:3319:0:0:0,-27.9958,-298.928	0/1:40:31,9:31:1108:9:324:-17.4647,0,-87.9898	0/0:241:241,0:241:8593:0:0:0,-72.5482,-773.369	0/1:136:115,21:115:4082:21:748:-26.7052,0,-325.858	0/0:225:225,0:225:8034:0:0:0,-67.7317,-723.08	0/1:272:211,61:211:7557:61:2173:-113.955,0,-598.287	0/1:156:123,33:123:4408:33:1168:-58.4665,0,-349.931	0/0:167:167,0:167:5963:0:0:0,-50.272,-536.778	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:179:179,0:179:6406:0:0:0,-53.8844,-576.62	0/0:152:152,0:152:5422:0:0:0,-45.7566,-488.111	0/0:331:330,1:330:11801:1:36:0,-96.0426,-1058.35	0/1:139:106,33:106:3778:33:1153:-62.2315,0,-298.376	0/0:108:108,0:108:3875:0:0:0,-32.5112,-348.943	0/1:82:65,17:65:2310:17:604:-30.0061,0,-182.455	0/1:245:192,53:192:6828:53:1873:-95.0948,0,-540.564	0/1:47:35,12:35:1256:12:413:-23.3494,0,-99.1969	0/1:118:88,29:88:3164:29:1040:-58.3341,0,-249.403	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.059	0/1:48:36,12:36:1296:12:428:-24.4094,0,-102.494	0/1:90:65,25:65:2313:25:884:-52.7857,0,-181.336	0/1:123:81,42:81:2904:42:1466:-95.2014,0,-224.562	0/0:231:231,0:231:8247:0:0:0,-69.5379,-742.244	0/0:226:225,0:225:8032:0:0:0,-67.7317,-722.541
chr06	32415561	.	TGA	CGT,TGT	139534	PASS	AB=0.298325,0.205239;ABP=8859.75,12563.6;AC=55,39;AF=0.292553,0.207447;AN=188;AO=7479,3416;CIGAR=1X1M1X,2M1X;DP=25070;DPB=25503;DPRA=0,0;EPP=16243.5,7420.76;EPPR=30670.7;GTI=1;LEN=3,1;MEANALT=2.06383,2.50877;MQM=59.7274,59.7359;MQMR=59.9705;NS=94;NUMALT=2;ODDS=3.25894;PAIRED=0,0;PAIREDR=0;PAO=1291,3;PQA=45232,108;PQR=72;PRO=2;QA=258967,122208;QR=490140;RO=14127;RPL=2,1171;RPP=16226.1,736.248;RPPR=2296.8;RPR=7477,2245;RUN=1,1;SAF=2,1171;SAP=16226.1,736.248;SAR=7477,2245;SRF=5131;SRP=2299.18;SRR=8996;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	0/2:59:28,12,19:28:951:12,19:411,676:-46.6404,-21.7089,-94.9931,0,-43.5365,-71.1789	0/2:335:167,77,91:167:5830:77,91:2696,3272:-216.677,-47.5999,-498.623,0,-254.853,-446.812	0/2:214:98,53,63:98:3429:53,63:1837,2253:-154.186,-34.3818,-297.401,0,-129.67,-260.012	0/1:473:309,163,1:309:10725:163,1:5633,36:-364.414,0,-822.741,-454.495,-868.871,-1326.02	0/1:182:126,55,1:126:4369:55,1:1938,36:-119.863,0,-338.56,-154.855,-352.179,-509.667	0/1:145:79,66,0:79:2771:66,0:2297,0:-162.984,0,-205.634,-186.765,-225.502,-412.268	0/1:333:220,108,5:220:7671:108,5:3772,176:-240.578,0,-591.355,-292.477,-609.538,-914.84	0/2:402:182,109,109:182:6283:109,109:3741,3908:-263.897,-15.0352,-492.665,0,-206.794,-477.634	0/1:226:126,100,0:126:4301:100,0:3411,0:-238.802,0,-317.797,-276.732,-347.9,-624.635	0/2:363:191,56,114:191:6602:56,114:1958,4086:-275.645,-173.862,-693.436,0,-377.154,-502.12	0/2:178:96,38,44:96:3333:38,44:1315,1567:-98.8215,-20.9003,-280.403,0,-164.124,-257.703	0/1:164:78,85,0:78:2729:85,0:2956,0:-216.84,0,-196.438,-240.321,-222.026,-462.348	0/1:146:79,66,0:79:2752:66,0:2331,0:-166.04,0,-203.92,-189.822,-223.788,-413.612	0/2:215:103,39,72:103:3511:39,72:1368,2588:-180.123,-99.8083,-372.917,0,-173.527,-263.179	0/2:271:159,35,77:159:5488:35,77:1214,2760:-177.203,-126.392,-561.7,0,-347.173,-422.672	0/1:151:94,57,0:94:3260:57,0:1962,0:-131.028,0,-247.807,-159.324,-264.966,-424.304	0/1:160:76,84,0:76:2582:84,0:2912,0:-213.793,0,-184.107,-236.672,-209.394,-446.078	0/1:148:72,76,0:72:2473:76,0:2623,0:-191.401,0,-177.921,-213.075,-200.799,-413.881	0/1:63:29,22,12:29:1026:22,12:760,432:-53.0081,0,-76.945,-26.5023,-48.3336,-106.462	0/2:499:228,134,137:228:7937:134,137:4639,4910:-331.809,-23.4636,-628.511,0,-268.407,-604.152	0/1:435:288,146,0:288:9840:146,0:5022,0:-321.124,0,-754.601,-407.82,-798.551,-1206.37	0/1:218:139,79,0:139:4705:79,0:2764,0:-183.317,0,-357.943,-225.16,-381.724,-606.598	0/2:363:212,42,108:212:7369:42,108:1434,3867:-251.387,-199.705,-786.165,0,-483.612,-566.605	0/1:333:196,137,0:196:6810:137,0:4800,0:-331.49,0,-512.391,-390.492,-553.632,-944.135	0/2:229:141,26,60:141:4951:26,60:912,2133:-131.374,-99.6054,-494.728,0,-328.739,-384.891	0/1:685:364,318,1:364:12655:318,1:11141,36:-796.882,0,-933.182,-903.519,-1025.97,-1932.11	0/2:699:390,110,197:390:13511:110,197:3800,7029:-455.597,-264.285,-1329.05,0,-789.172,-1038.59	0/2:135:57,31,47:57:2001:31,47:1056,1669:-118.832,-50.3368,-203.843,0,-77.1906,-148.699	0/2:794:418,178,198:418:14566:178,198:6187,7076:-451.11,-73.9487,-1204.91,0,-681.557,-1124.95	0/2:490:268,90,131:268:9326:90,131:3133,4700:-302.696,-128.724,-859.936,0,-503.66,-718.877	0/2:355:187,76,91:187:6488:76,91:2615,3243:-207.681,-51.6061,-556.101,0,-315.01,-499.988	0/1:8:3,5,0:3:106:5,0:172,0:-13.4092,0,-7.48086,-14.3123,-8.98601,-22.9486	0/1:31:24,7,0:24:852:7,0:250,0:-13.5148,0,-67.6689,-20.7395,-69.7761,-90.1591	0/1:11:7,4,0:7:225:4,0:137,0:-9.00412,0,-16.9049,-11.1113,-18.109,-29.233	0/1:8:3,5,0:3:100:5,0:180,0:-14.1438,0,-6.92162,-15.0469,-8.42677,-23.1305	0/1:6:3,3,0:3:108:3,0:104,0:-7.54832,0,-7.91215,-8.45141,-8.81524,-17.2664	0/2:750:409,141,198:409:14338:141,198:4856,7055:-451.931,-180.639,-1304.93,0,-772.33,-1107.14	0/1:476:283,193,0:283:9800:193,0:6684,0:-457.885,0,-738.332,-543.076,-796.431,-1339.51	0/2:117:53,23,41:53:1813:23,41:801,1464:-103.372,-54.192,-194.417,0,-82.0137,-134.809	0/2:7:3,1,3:3:108:1,3:34,108:-7.92411,-6.0742,-14.5854,0,-6.0742,-7.92411	0/2:360:170,75,115:170:5898:75,115:2640,4120:-284.765,-121.032,-577.503,0,-264.139,-444.432	0/1:83:45,38,0:45:1580:38,0:1335,0:-95.4647,0,-117.504,-109.011,-128.943,-237.603	0/2:413:209,55,149:209:7232:55,149:1905,5348:-373.129,-281.235,-852.363,0,-432.879,-542.838	0/2:275:139,50,86:139:4873:50,86:1741,3054:-206.932,-107.232,-488.717,0,-254.995,-370.652	0/1:223:134,89,0:134:4602:89,0:3021,0:-204.633,0,-346.87,-244.971,-373.662,-618.652	0/1:294:196,97,0:196:6840:97,0:3350,0:-213.182,0,-527.154,-272.184,-556.354,-828.525	0/1:213:116,58,38:116:4067:58,38:2011,1358:-128.53,0,-313.494,-52.7239,-220.23,-372.24	0/1:377:244,132,1:244:8348:132,1:4569,36:-297.674,0,-637.809,-368.187,-674.607,-1045.45	0/1:279:179,100,0:179:6267:100,0:3479,0:-228.969,0,-479.79,-282.854,-509.893,-792.758	0/2:467:214,122,129:214:7473:122,129:4205,4635:-313.696,-36.5763,-607.707,0,-266.32,-569.032	0/1:300:173,126,0:173:5967:126,0:4364,0:-302.604,0,-446.825,-354.682,-484.755,-839.411	0/2:19:7,4,7:7:250:4,7:134,252:-18.4803,-9.73932,-28.9234,0,-9.5574,-18.2992	0/1:259:112,147,0:112:3961:147,0:5059,0:-377.128,0,-278.368,-410.843,-322.619,-733.462	0/2:174:82,34,58:82:2843:34,58:1187,2071:-144.162,-72.3036,-293.139,0,-134.528,-213.615	0/1:34:18,9,7:18:630:9,7:324,252:-21.0204,0,-48.4568,-5.87564,-30.6012,-54.9343	0/2:399:225,53,121:225:7803:53,121:1827,4336:-285.869,-205.203,-822.866,0,-485.225,-597.202	0/1:136:97,37,2:97:3385:37,2:1274,72:-74.2609,0,-264.171,-97.5852,-269.434,-372.306	0/2:26:16,3,7:16:566:3,7:108,244:-15.0193,-11.0201,-56.2212,0,-37.2821,-43.9881	0/1:35:20,15,0:20:697:15,0:517,0:-36.3191,0,-52.5164,-42.3397,-57.0319,-99.0254	0/2:294:177,44,72:177:6141:44,72:1544,2568:-156.061,-83.6972,-569.603,0,-373.506,-477.481	0/1:310:192,118,0:192:6709:118,0:4068,0:-272.991,0,-510.582,-330.789,-546.104,-876.547	0/2:17:5,2,9:5:174:2,9:72,320:-24.6017,-20.2292,-33.7776,0,-8.28564,-11.4591	0/1:476:256,217,0:256:8941:217,0:7523,0:-534.413,0,-661.03,-611.476,-726.353,-1337.74	0/1:722:440,278,4:440:15261:278,4:9634,144:-650.516,0,-1156.76,-771.219,-1228.7,-2010.48	0/2:331:154,81,95:154:5411:81,95:2827,3408:-231.608,-48.0407,-464.073,0,-210.494,-411.824	0/2:194:121,19,52:121:4081:19,52:657,1860:-114.693,-97.7314,-422.724,0,-277.331,-315.067	0/1:498:317,180,0:317:11028:180,0:6160,0:-404.568,0,-842.503,-499.994,-896.688,-1396.67	0/1:358:257,97,2:257:8929:97,2:3356,72:-195.319,0,-696.689,-266.808,-720.014,-992.104	0/1:96:62,33,1:62:2149:33,1:1129,36:-72.9478,0,-164.711,-88.6738,-171.708,-263.033	0/1:166:95,71,0:95:3293:71,0:2444,0:-169.888,0,-246.27,-198.486,-267.643,-466.13	0/1:279:145,132,1:145:5036:132,1:4616,36:-331.907,0,-369.697,-372.619,-406.496,-781.718	0/2:63:35,11,17:35:1236:11,17:396,608:-39.0396,-17.2655,-114.607,0,-68.3394,-95.5328	0/1:171:94,77,0:94:3218:77,0:2566,0:-179.374,0,-238.03,-207.671,-261.209,-468.882	0/2:113:62,22,29:62:2132:22,29:771,1044:-66.5018,-22.4297,-188.94,0,-110.396,-164.404	0/1:570:347,223,0:347:11947:223,0:7686,0:-519.201,0,-903.205,-623.658,-970.335,-1593.99	0/1:437:273,163,0:273:9516:163,0:5667,0:-378.526,0,-724.813,-460.707,-773.881,-1234.6	0/1:235:111,67,56:111:3864:67,56:2316,2012:-154.689,0,-294.023,-24.0689,-150.159,-321.409	0/1:322:171,150,1:171:5841:150,1:5250,36:-375.657,0,-428.841,-424.196,-471.058,-897.893	0/1:32:20,12,0:20:699:12,0:405,0:-26.795,0,-53.2524,-32.8156,-56.8648,-89.6837	0/1:256:175,78,3:175:6098:78,3:2739,104:-170.237,0,-472.423,-214.464,-487.45,-709.466	0/1:216:118,96,0:118:4019:96,0:3347,0:-236.676,0,-297.142,-272.198,-326.041,-598.239	0/1:480:309,168,0:309:10776:168,0:5853,0:-382.943,0,-825.837,-475.961,-876.41,-1352.37	0/2:362:190,71,100:190:6549:71,100:2451,3575:-234.306,-92.3852,-602.977,0,-332.851,-501.87	0/1:196:112,83,0:112:3913:83,0:2882,0:-200.532,0,-293.31,-234.247,-318.295,-552.554	0/2:302:156,46,100:156:5347:46,100:1605,3583:-244.232,-160.658,-580.882,0,-303.537,-403.973	0/2:532:303,79,150:303:10497:79,150:2709,5334:-343.383,-214.68,-1044.02,0,-633.208,-807.972	0/1:94:51,24,19:51:1794:24,19:843,684:-53.2595,0,-138.813,-12.8193,-90.246,-153.14	0/1:181:85,96,0:85:2920:96,0:3307,0:-242.997,0,-208.207,-268.584,-237.105,-505.692	0/1:173:78,95,0:78:2724:95,0:3230,0:-238.477,0,-192.973,-261.957,-221.571,-483.533	0/2:119:75,21,23:75:2605:21,23:708,824:-44.6273,-9.83897,-215.284,0,-154.409,-204.858	0/2:200:121,26,53:121:4148:26,53:894,1898:-118.367,-82.1978,-411.105,0,-264.145,-320.789	0/2:267:160,19,88:160:5569:19,88:628,3168:-210.324,-207.716,-654.822,0,-402.073,-426.358	0/1:384:216,166,1:216:7469:166,1:5682,36:-395.807,0,-556.937,-457.892,-603.97,-1064.5	0/1:381:260,120,0:260:9129:120,0:4096,0:-254.077,0,-706.854,-332.345,-742.978,-1075.34
chr06	32415575	.	AAA	GAA,GAG	390972	PASS	AB=0.730279,0.26606;ABP=3903.35,4028.35;AC=145,43;AF=0.771277,0.228723;AN=188;AO=16188,2275;CIGAR=1X2M,1X1M1X;DP=18527;DPB=18527;DPRA=0,1.33971;EPP=35111.4,4943.11;EPPR=7.35324;GTI=9;LEN=1,3;MEANALT=2.15957,2.625;MQM=59.8872,59.578;MQMR=60;NS=94;NUMALT=2;ODDS=1.58993;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=573091,78005;QR=60;RO=2;RPL=6,0;RPP=35102.7,4943.11;RPPR=7.35324;RPR=16182,2275;RUN=1,1;SAF=1,0;SAP=35146.1,4943.11;SAR=16187,2275;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:56:0,37,19:0:0:37,19:1287,628:-155.745,-51.0925,-39.9544,-104.989,0,-99.2696	1/2:336:0,245,90:0:0:245,90:8729,3135:-966.418,-254.927,-181.175,-711.481,0,-684.389	1/2:212:0,148,63:0:0:148,63:5287,2188:-608.993,-177.929,-133.376,-431.133,0,-412.168	1/1:278:0,276,1:0:0:276,1:9773,34:-879.028,-83.0843,0,-876.27,-80.2765,-875.969	1/1:144:0,144,0:0:0:144,0:5123,0:-461.213,-43.3483,0,-461.213,-43.3483,-461.213	1/1:145:0,145,0:0:0:145,0:5151,0:-463.724,-43.6494,0,-463.724,-43.6494,-463.724	1/1:241:0,233,4:0:0:233,4:8258,134:-742.892,-70.14,0,-732.041,-59.2821,-730.837	1/2:403:0,290,111:0:0:290,111:10224,3777:-1138.86,-306.443,-219.144,-832.52,0,-799.106	1/1:221:0,218,1:0:0:218,1:7683,33:-691.21,-65.6245,0,-688.541,-62.9384,-688.24	1/2:230:0,154,76:0:0:154,76:5466,2573:-654.253,-208.903,-162.544,-445.693,0,-422.815	1/2:123:0,84,39:0:0:84,39:2999,1332:-352.934,-108.43,-83.1431,-244.85,0,-233.11	1/1:166:0,166,0:0:0:166,0:5789,0:-521.1,-49.971,0,-521.1,-49.971,-521.1	1/1:148:0,148,0:0:0:148,0:5253,0:-472.901,-44.5524,0,-472.901,-44.5524,-472.901	1/2:161:0,109,51:0:0:109,51:3860,1757:-457.09,-142.658,-109.845,-314.421,0,-299.069	1/2:138:0,108,30:0:0:108,30:3776,1004:-388.813,-81.6228,-49.1115,-307.528,0,-298.497	1/1:106:0,105,0:0:0:105,0:3720,0:-334.629,-31.6082,0,-334.629,-31.6082,-334.629	1/1:159:0,158,1:0:0:158,1:5601,36:-503.858,-47.5627,0,-500.924,-44.2692,-500.623	1/1:143:0,143,0:0:0:143,0:5031,0:-452.93,-43.0473,0,-452.93,-43.0473,-452.93	1/2:62:0,49,13:0:0:49,13:1723,453:-176.233,-35.9731,-21.2226,-140.601,0,-136.688	1/2:371:0,273,95:0:0:273,95:9637,3228:-1046.6,-261.833,-179.652,-784.854,0,-756.256	1/1:284:0,284,0:0:0:284,0:10064,0:-905.652,-85.4925,0,-905.652,-85.4925,-905.652	1/1:143:0,142,0:0:0:142,0:5000,0:-449.899,-42.7463,0,-449.899,-42.7463,-449.899	1/2:211:0,145,66:0:0:145,66:5146,2244:-601.037,-182.029,-138.38,-419.352,0,-399.484	1/1:270:1,268,0:1:24:268,0:9535,0:-855.587,-78.8771,0,-855.888,-80.676,-857.747	1/2:115:0,85,29:0:0:85,29:3029,993:-327.5,-80.599,-55.0114,-246.907,0,-238.177	1/1:559:0,557,1:0:0:557,1:19804,36:-1781.44,-167.674,0,-1778.51,-164.733,-1778.21	1/2:373:0,283,90:0:0:283,90:10029,3086:-1067.84,-250.86,-165.669,-817.32,0,-790.228	1/2:89:0,61,26:0:0:61,26:2144,877:-245.643,-71.126,-52.7632,-174.578,0,-166.751	1/2:482:0,363,119:0:0:363,119:12884,4145:-1387.15,-337.418,-228.144,-1050.08,0,-1014.26	1/2:350:0,269,81:0:0:269,81:9560,2822:-1008.78,-229.839,-148.862,-779.286,0,-754.903	1/2:231:0,186,43:0:0:186,43:6619,1454:-657.207,-117.747,-61.7557,-539.537,0,-526.593	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:11:0,11,0:0:0:11,0:372,0:-33.8038,-3.31133,0,-33.8038,-3.31133,-33.8038	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:478:0,362,114:0:0:362,114:12711,3956:-1355.71,-321.209,-212.236,-1034.63,0,-1000.31	1/1:363:0,363,0:0:0:363,0:12808,0:-1152.22,-109.274,0,-1152.22,-109.274,-1152.22	1/2:121:0,78,41:0:0:78,41:2736,1402:-336.471,-113.813,-90.3331,-222.715,0,-210.373	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:241:0,177,63:0:0:177,63:6264,2186:-687.891,-177.702,-124.419,-510.256,0,-491.291	1/1:65:0,65,0:0:0:65,0:2297,0:-206.99,-19.567,0,-206.99,-19.567,-206.99	1/2:256:0,173,82:0:0:173,82:6101,2800:-723.96,-227.188,-175.11,-496.835,0,-472.151	1/2:208:0,141,64:0:0:141,64:4979,2187:-582.902,-177.462,-135.017,-405.504,0,-386.239	1/1:164:0,163,0:0:0:163,0:5680,0:-511.105,-49.0679,0,-511.105,-49.0679,-511.105	1/1:175:0,173,2:0:0:173,2:6127,72:-551.174,-52.0782,0,-545.299,-45.8435,-544.697	1/2:206:0,168,38:0:0:168,38:6014,1326:-598.621,-108.192,-57.6194,-490.779,0,-479.34	1/1:236:0,233,2:0:0:233,2:8251,70:-742.023,-70.14,0,-736.329,-64.3728,-735.727	1/1:188:0,187,0:0:0:187,0:6619,0:-595.426,-56.2926,0,-595.426,-56.2926,-595.426	1/2:362:0,259,102:0:0:259,102:9193,3561:-1038.72,-289.723,-211.756,-749.078,0,-718.373	1/1:274:0,274,0:0:0:274,0:9717,0:-874.469,-82.4822,0,-874.469,-82.4822,-874.469	1/2:15:0,8,7:0:0:8,7:280,237:-42.3392,-19.5518,-17.1436,-23.1311,0,-21.0239	1/1:258:0,257,0:0:0:257,0:9119,0:-820.353,-77.3647,0,-820.353,-77.3647,-820.353	1/2:116:0,80,36:0:0:80,36:2849,1258:-334.876,-102.664,-78.5818,-232.564,0,-221.726	1/2:34:0,26,7:0:0:26,7:924,246:-95.462,-20.1496,-12.3228,-75.438,0,-73.3308	1/2:223:0,171,52:0:0:171,52:6048,1786:-637.961,-145.355,-93.879,-492.952,0,-477.298	1/1:91:0,91,0:0:0:91,0:3212,0:-289.303,-27.3937,0,-289.303,-27.3937,-289.303	1/2:19:0,16,3:0:0:16,3:561,106:-54.6339,-8.98601,-4.16953,-46.0006,0,-45.0976	1/1:21:0,21,0:0:0:21,0:744,0:-67.2843,-6.32163,0,-67.2843,-6.32163,-67.2843	1/2:192:0,145,47:0:0:145,47:5170,1622:-553.554,-132.114,-88.4651,-421.788,0,-407.639	1/1:230:0,229,0:0:0:229,0:8088,0:-727.6,-68.9359,0,-727.6,-68.9359,-727.6	1/2:14:0,5,9:0:0:5,9:180,313:-40.4875,-25.7961,-24.2909,-15.0469,0,-12.3376	1/1:359:0,357,0:0:0:357,0:12669,0:-1139.81,-107.468,0,-1139.81,-107.468,-1139.81	1/1:579:0,573,4:0:0:573,4:20415,134:-1836.4,-172.49,0,-1825.55,-161.649,-1824.34	1/2:273:0,192,80:0:0:192,80:6787,2729:-774.16,-221.405,-163.607,-552.741,0,-528.659	1/2:79:0,60,19:0:0:60,19:2061,618:-217.439,-50.0713,-32.0095,-167.697,0,-161.977	1/1:320:0,318,0:0:0:318,0:11226,0:-1009.96,-95.7275,0,-1009.96,-95.7275,-1009.96	1/1:199:0,196,2:0:0:196,2:6927,72:-623.166,-59.0019,0,-617.291,-53.0663,-616.689	1/1:66:0,66,0:0:0:66,0:2340,0:-210.848,-19.868,0,-210.848,-19.868,-210.848	1/1:162:0,160,0:0:0:160,0:5650,0:-508.328,-48.1648,0,-508.328,-48.1648,-508.328	1/1:237:0,236,1:0:0:236,1:8337,36:-749.979,-71.0431,0,-747.042,-67.7468,-746.741	1/2:33:0,21,12:0:0:21,12:740,414:-94.2289,-33.9771,-27.6554,-60.5994,0,-56.987	1/1:167:0,167,0:0:0:167,0:5879,0:-529.222,-50.272,0,-529.222,-50.272,-529.222	1/2:111:0,83,28:0:0:83,28:2960,951:-318.763,-77.459,-52.4735,-241.647,0,-233.218	1/1:456:0,454,1:0:0:454,1:16059,25:-1444.7,-136.668,0,-1442.75,-134.716,-1442.45	1/1:315:0,315,0:0:0:315,0:11195,0:-1007.42,-94.8245,0,-1007.42,-94.8245,-1007.42	1/2:231:0,175,56:0:0:175,56:6166,1916:-657.443,-155.787,-103.107,-502,0,-485.142	1/1:314:0,313,1:0:0:313,1:11063,33:-995.228,-94.2224,0,-992.56,-91.2243,-992.259	1/1:32:0,32,0:0:0:32,0:1136,0:-102.549,-9.63296,0,-102.549,-9.63296,-102.549	1/1:165:0,165,0:0:0:165,0:5852,0:-526.791,-49.67,0,-526.791,-49.67,-526.791	1/1:211:0,211,0:0:0:211,0:7513,0:-676.202,-63.5173,0,-676.202,-63.5173,-676.202	1/1:300:1,298,0:1:36:298,0:10627,0:-952.727,-86.7695,0,-953.028,-89.7069,-955.966	1/2:258:0,193,62:0:0:193,62:6831,2107:-727.427,-171.007,-112.908,-556.537,0,-537.873	1/1:153:0,153,0:0:0:153,0:5432,0:-488.989,-46.0576,0,-488.989,-46.0576,-488.989	1/2:236:0,156,78:0:0:156,78:5503,2647:-662.764,-214.669,-167.708,-448.118,0,-424.638	1/2:347:0,257,90:0:0:257,90:9112,3051:-990.054,-247.718,-170.354,-742.679,0,-715.586	1/2:94:0,75,19:0:0:75,19:2636,641:-266.836,-52.2665,-29.6892,-214.91,0,-209.19	1/1:182:0,182,0:0:0:182,0:6454,0:-580.925,-54.7875,0,-580.925,-54.7875,-580.925	1/1:176:0,175,1:0:0:175,1:6097,36:-548.448,-52.6803,0,-545.514,-49.3867,-545.213	1/2:84:0,70,14:0:0:70,14:2487,468:-240.889,-38.2185,-17.1464,-203.009,0,-198.794	1/2:133:0,99,34:0:0:99,34:3469,1141:-375.032,-92.7525,-62.9505,-282.619,0,-272.384	1/2:161:0,105,55:0:0:105,55:3706,1889:-455.174,-153.39,-121.782,-301.8,0,-285.243	1/1:283:0,282,0:0:0:282,0:10006,0:-900.062,-84.8905,0,-900.062,-84.8905,-900.062	1/1:266:0,263,0:0:0:263,0:9308,0:-837.384,-79.1709,0,-837.384,-79.1709,-837.384
chr06	32421262	.	G	T	223742	PASS	AB=0.503491;ABP=3.70776;AC=142;AF=0.763441;AN=186;AO=10562;CIGAR=1X;DP=13868;DPB=13868;DPRA=0;EPP=22877.3;EPPR=7123.27;GTI=1;LEN=1;MEANALT=1.22581;MQM=57.2502;MQMR=59.9738;NS=93;NUMALT=1;ODDS=0.579575;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=377854;QR=116409;RO=3279;RPL=10553;RPP=22860;RPPR=7123.27;RPR=9;RUN=1;SAF=10560;SAP=22920.7;SAR=2;SRF=3279;SRP=7123.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:79:47,32:47:1684:32:1140:-79.0327,0,-128.066	0/1:210:81,129:81:2898:129:4612:-351.192,0,-197.838	0/1:183:91,91:91:3243:91:3268:-238.283,0,-236.517	1/1:296:0,296:0:0:296:10608:-954.01,-89.1049,0	1/1:89:1,88:1:36:88:3152:-279.958,-23.1934,0	1/1:91:0,91:0:0:91:3260:-292.932,-27.3937,0	1/1:157:1,156:1:36:156:5588:-498.945,-43.6634,0	0/1:325:167,157:167:5953:157:5625:-407.049,0,-437.985	1/1:133:5,126:5:180:126:4524:-390.338,-23.2426,0	0/1:169:74,95:74:2631:95:3397:-254.849,0,-186.163	0/1:77:41,36:41:1446:36:1283:-92.4368,0,-107.255	1/1:83:0,83:0:0:83:2962:-265.541,-24.9855,0	1/1:91:0,91:0:0:91:3247:-290.899,-27.3937,0	0/1:113:58,55:58:2056:55:1967:-143.124,0,-151.226	0/1:77:39,38:39:1384:38:1368:-100.237,0,-101.68	1/1:62:0,62:0:0:62:2200:-197.593,-18.6639,0	1/1:112:0,112:0:0:112:3994:-359.125,-33.7154,0	1/1:58:0,58:0:0:58:2036:-183.159,-17.4597,0	0/1:38:19,19:19:680:19:684:-49.1604,0,-50.09	0/1:241:99,142:99:3555:142:5073:-383.024,0,-247.598	1/1:146:0,146:0:0:146:5227:-469.697,-43.9504,0	1/1:161:1,159:1:36:159:5687:-508.031,-44.9064,0	0/1:168:81,87:81:2892:87:3120:-230.011,0,-209.944	1/1:185:1,184:1:36:184:6572:-587.039,-52.0923,0	0/1:87:37,50:37:1328:50:1786:-134.407,0,-93.6326	1/1:582:2,578:2:72:578:20726:-1855.41,-168.121,0	0/1:321:162,159:162:5775:159:5688:-414.552,0,-423.237	0/1:44:23,21:23:793:21:752:-54.719,0,-58.4398	0/1:355:194,160:194:6950:160:5751:-410.416,0,-518.639	0/1:442:198,242:198:7055:242:8675:-646.402,0,-501.926	0/1:216:94,122:94:3359:122:4369:-328.313,0,-237.504	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7811,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0648,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.1946,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7701,-1.80618,0	0/1:213:103,110:103:3617:110:3925:-288.964,0,-261.618	1/1:314:0,312:0:0:312:11177:-1002.7,-93.9214,0	0/1:74:41,33:41:1444:33:1180:-84.0458,0,-107.98	1/1:8:0,8:0:0:8:288:-26.2549,-2.40824,0	0/1:237:107,129:107:3840:129:4597:-342.112,0,-274.392	0/1:36:23,13:23:816:13:458:-30.6243,0,-62.9246	0/1:219:106,111:106:3748:111:3961:-290.583,0,-271.836	0/1:110:51,59:51:1807:59:2111:-157.007,0,-129.798	1/1:85:0,85:0:0:85:3033:-273.071,-25.5876,0	1/1:144:0,144:0:0:144:5157:-463.115,-43.3483,0	0/1:228:108,120:108:3855:120:4312:-316.439,0,-278.511	1/1:270:1,269:1:36:269:9604:-859.752,-77.6798,0	0/1:146:83,62:83:2937:62:2228:-156.322,0,-220.555	0/1:271:148,123:148:5293:123:4411:-315.527,0,-394.925	1/1:161:0,161:0:0:161:5788:-520.804,-48.4658,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:228:0,228:0:0:228:8145:-731.58,-68.6348,0	0/1:77:30,47:30:1056:47:1684:-128.604,0,-72.1688	1/1:3:0,3:0:0:3:108:-10.0648,-0.90309,0	1/1:175:1,174:1:36:174:6206:-553.809,-49.082,0	1/1:58:0,58:0:0:58:2084:-187.732,-17.4597,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:388:-35.2558,-3.31133,0	0/1:150:70,78:70:2472:78:2778:-204.944,0,-177.82	1/1:139:1,138:1:36:138:4923:-438.873,-38.2449,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:447:0,447:0:0:447:15999:-1438.32,-134.56,0	1/1:372:3,368:3:108:368:13211:-1176.92,-101.967,0	0/1:200:112,86:112:3975:86:3088:-217.754,0,-297.997	0/1:188:98,90:98:3484:90:3222:-233.296,0,-257.177	1/1:319:1,317:1:36:317:11308:-1010.21,-92.4891,0	1/1:185:4,181:4:135:181:6473:-568.392,-43.208,0	1/1:31:0,31:0:0:31:1102:-97.6527,-9.33193,0	1/1:105:0,105:0:0:105:3725:-334.977,-31.6082,0	1/1:142:1,141:1:36:141:5041:-449.838,-39.148,0	0/1:16:8,8:8:284:8:284:-21.0859,0,-21.0869	1/1:152:0,152:0:0:152:5399:-484.779,-45.7566,0	0/1:54:30,24:30:1048:24:860:-61.3586,0,-78.3717	1/1:330:0,330:0:0:330:11799:-1059.27,-99.3399,0	0/1:252:140,112:140:5020:112:4013:-285.295,0,-376.086	0/1:200:99,99:99:3518:99:3547:-258.72,0,-256.908	1/1:218:0,218:0:0:218:7827:-702.06,-65.6245,0	1/1:7:0,7:0:0:7:252:-22.9724,-2.10721,0	1/1:194:2,191:2:72:191:6826:-606.826,-51.6219,0	1/1:171:0,171:0:0:171:6139:-550.678,-51.4761,0	1/1:194:0,194:0:0:194:6948:-624.92,-58.3998,0	0/1:138:69,68:69:2415:68:2416:-175.524,0,-176.005	1/1:84:0,84:0:0:84:3009:-270.859,-25.2865,0	0/1:103:52,51:52:1774:51:1783:-129.648,0,-128.93	0/1:187:92,95:92:3162:95:3400:-249.782,0,-228.511	0/1:51:20,31:20:708:31:1097:-83.2309,0,-48.6931	0/1:74:34,39:34:1180:39:1392:-102.959,0,-84.167	1/1:63:0,63:0:0:63:2247:-202.16,-18.9649,0	0/1:31:14,17:14:504:17:604:-44.9668,0,-36.3662	0/1:95:49,46:49:1696:46:1652:-120.112,0,-124.322	0/1:82:60,22:60:2111:22:784:-46.0931,0,-165.572	1/1:283:0,283:0:0:283:10164:-914.134,-85.1915,0	1/1:120:0,120:0:0:120:4276:-384.707,-36.1236,0
chr06	32421281	.	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chr06	32522742	.	C	T	64715.3	PASS	AB=0.518194;ABP=17.7864;AC=49;AF=0.260638;AN=188;AO=2703;CIGAR=1X;DP=10270;DPB=10270;DPRA=1.39336;EPP=118.405;EPPR=132.617;GTI=1;LEN=1;MEANALT=1.01724;MQM=46.6167;MQMR=59.88;NS=94;NUMALT=1;ODDS=0.905172;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96885;QR=269029;RO=7566;RPL=1447;RPP=32.3175;RPPR=782.486;RPR=1256;RUN=1;SAF=285;SAP=3658.03;SAR=2418;SRF=1160;SRP=7901.51;SRR=6406;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:30,28:30:1061:28:996:-70.2227,0,-78.3396	0/1:68:23,45:23:828:45:1612:-123.415,0,-54.3741	0/1:174:87,86:87:3041:86:3084:-221.522,0,-221.482	0/0:152:152,0:152:5415:0:0:0,-45.7566,-487.377	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9319	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:88:88,0:88:3104:0:0:0,-26.4906,-279.046	0/1:195:75,120:75:2610:120:4289:-320.159,0,-176.404	0/0:116:113,3:113:4052:3:108:0,-24.9553,-354.791	0/1:109:59,50:59:2082:50:1800:-126.412,0,-154.834	0/1:105:61,44:61:2158:44:1576:-108.717,0,-162.245	0/0:110:110,0:110:3886:0:0:0,-33.1133,-349.927	0/0:105:105,0:105:3716:0:0:0,-31.6081,-334.627	0/1:126:67,59:67:2370:59:2098:-147.227,0,-175.496	0/1:109:44,65:44:1584:65:2325:-172.942,0,-109.949	0/0:91:91,0:91:3242:0:0:0,-27.3937,-291.993	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:45:17,28:17:612:28:1008:-75.7107,0,-41.8671	0/1:115:62,53:62:2228:53:1908:-134.714,0,-166.165	0/0:142:142,0:142:5017:0:0:0,-42.7463,-451.673	0/0:150:150,0:150:5304:0:0:0,-45.1545,-477.502	0/1:121:56,65:56:1946:65:2321:-169.425,0,-138.985	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.452	0/1:53:27,26:27:968:26:932:-67.285,0,-71.4828	0/0:501:500,1:500:17765:1:36:0,-147.218,-1594.83	0/1:243:107,136:107:3780:136:4854:-357.671,0,-267.246	0/1:34:18,16:18:648:16:576:-41.4062,0,-48.4169	0/1:581:279,302:279:9946:302:10844:-789.735,0,-720.178	0/1:115:49,66:49:1741:66:2376:-175.706,0,-122.354	0/1:97:49,48:49:1749:48:1709:-122.363,0,-128.446	0/1:4:1,3:1:36:3:108:-8.74115,0,-2.39415	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8885	0/1:362:191,171:191:6797:171:6140:-439.078,0,-502.829	0/0:83:83,0:83:2976:0:0:0,-24.9855,-267.216	0/1:54:38,16:38:1364:16:576:-35.4129,0,-106.805	1/1:2:0,2:0:0:2:72:-6.74218,-0.60206,0	0/1:140:52,88:52:1845:88:3160:-238.1,0,-124.178	0/1:51:26,25:26:932:25:900:-64.1023,0,-68.8463	0/1:128:69,59:69:2431:59:2120:-148.675,0,-180.502	0/1:101:50,51:50:1800:51:1836:-130.303,0,-131.878	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/0:217:216,1:216:7704:1:36:0,-61.7252,-689.794	0/1:57:21,36:21:756:36:1281:-97.1857,0,-51.2085	0/0:115:115,0:115:4059:0:0:0,-34.6184,-365.478	0/1:106:54,52:54:1925:52:1860:-132.958,0,-141.615	0/1:135:75,60:75:2658:60:2152:-149.015,0,-198.824	0/0:208:207,1:207:7358:1:36:0,-59.0177,-658.673	0/1:19:17,2:17:608:2:68:-0.688258,0,-49.3316	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.96	0/1:177:87,90:87:3112:90:3232:-233.458,0,-227.023	0/1:10:6,4:6:201:4:144:-10.1566,0,-15.4055	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5989	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7659	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6444	0/1:154:60,94:60:2129:94:3356:-250.095,0,-145.509	0/0:141:139,2:139:4969:2:72:0,-35.703,-440.605	1/1:21:1,20:1:36:20:720:-60.3201,-2.72336,0	0/0:325:325,0:325:11566:0:0:0,-97.8347,-1040.81	0/0:173:170,3:170:5983:3:104:0,-42.4874,-528.964	0/1:87:36,51:36:1292:51:1832:-136.742,0,-90.3942	0/1:65:29,36:29:1025:36:1280:-94.0411,0,-72.9937	0/0:151:150,1:150:5331:1:36:0,-41.907,-476.359	0/0:125:123,2:123:4389:2:72:0,-31.0394,-387.786	0/0:104:103,1:103:3688:1:36:0,-27.7485,-328.564	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.133	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.18	0/1:19:10,9:10:345:9:324:-23.3783,0,-25.6613	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/1:109:48,61:48:1701:61:2188:-161.869,0,-120.556	0/0:265:265,0:265:9388:0:0:0,-79.7729,-844.875	0/1:174:74,100:74:2637:100:3588:-265.703,0,-185.196	0/1:76:37,39:37:1332:39:1400:-102.079,0,-97.2577	0/0:130:128,2:128:4536:2:72:0,-32.3725,-401.643	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/0:77:76,1:76:2697:1:36:0,-19.6207,-239.415	0/0:246:246,0:246:8737:0:0:0,-74.0534,-786.273	0/1:78:42,36:42:1504:36:1292:-91.5513,0,-112.173	0/0:137:137,0:137:4882:0:0:0,-41.2411,-439.519	0/1:92:38,54:38:1349:54:1944:-144.3,0,-94.0131	0/1:151:85,66:85:2999:66:2353:-162.51,0,-224.681	0/1:20:13,7:13:468:7:252:-16.7546,0,-36.439	0/1:61:34,27:34:1220:27:968:-67.616,0,-91.7421	0/0:94:94,0:94:3360:0:0:0,-28.2968,-302.617	0/1:113:51,62:51:1805:62:2227:-162.769,0,-128.713	0/1:169:86,83:86:3084:83:2984:-213.841,0,-226.914	0/1:79:35,44:35:1260:44:1576:-116.466,0,-89.9241	0/0:117:117,0:117:4153:0:0:0,-35.2205,-373.903	0/0:119:119,0:119:4242:0:0:0,-35.8226,-381.925
chr06	32522760	.	C	T	37923.7	PASS	AB=0.515232;ABP=12.1391;AC=48;AF=0.255319;AN=188;AO=2353;CIGAR=1X;DP=8829;DPB=8829;DPRA=1.23735;EPP=5112.48;EPPR=14052.4;GTI=1;LEN=1;MEANALT=1.05263;MQM=44.9099;MQMR=59.8473;NS=94;NUMALT=1;ODDS=0.0460187;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83428;QR=230821;RO=6470;RPL=2353;RPP=5112.48;RPPR=14052.4;RPR=0;RUN=1;SAF=0;SAP=5112.48;SAR=2353;SRF=0;SRP=14052.4;SRR=6470;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:32,28:32:1148:28:985:-68.6365,0,-85.568	0/1:64:23,41:23:824:41:1449:-110.083,0,-55.2174	0/1:171:85,85:85:3029:85:2984:-214.344,0,-221.303	0/0:154:154,0:154:5471:0:0:0,-46.3586,-492.459	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9319	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:88:88,0:88:3137:0:0:0,-26.4906,-281.99	0/1:191:72,119:72:2573:119:4196:-312.217,0,-174.321	0/0:120:117,3:117:4173:3:108:0,-26.1595,-365.653	0/1:109:59,50:59:2109:50:1747:-121.821,0,-157.264	0/1:104:62,42:62:2197:42:1489:-101.283,0,-166.04	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.861	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.354	0/1:124:68,56:68:2436:56:1997:-138.745,0,-182.038	0/1:109:44,65:44:1584:65:2302:-170.968,0,-109.949	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.099	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.959	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:43:18,25:18:644:25:896:-66.3446,0,-45.3463	0/1:113:62,51:62:2201:51:1794:-125.312,0,-164.337	0/0:147:146,0:146:5221:0:0:0,-43.9504,-469.667	0/0:66:65,0:65:2324:0:0:0,-19.5669,-209.06	0/1:117:55,62:55:1976:62:2209:-160.356,0,-142.893	0/0:57:57,0:57:2018:0:0:0,-17.1587,-181.867	0/1:53:29,24:29:1044:24:864:-61.1068,0,-78.3202	0/0:227:227,0:227:8080:0:0:0,-68.3338,-727.146	0/1:242:106,136:106:3797:136:4872:-359.186,0,-269.077	0/1:30:18,12:18:644:12:428:-29.316,0,-49.2597	0/1:250:110,140:110:3899:140:4982:-362.458,0,-275.841	0/1:113:49,64:49:1730:64:2285:-168.227,0,-121.964	0/1:99:52,47:52:1856:47:1657:-116.954,0,-137.472	0/1:4:1,3:1:36:3:108:-8.74115,0,-2.39415	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8885	0/1:174:99,75:99:3564:75:2684:-184.991,0,-268.583	0/0:85:85,0:85:2998:0:0:0,-25.5875,-269.963	0/1:53:38,15:38:1368:15:513:-30.1121,0,-107.466	1/1:2:0,2:0:0:2:72:-6.74218,-0.60206,0	0/1:140:53,87:53:1870:87:3064:-229.754,0,-126.425	0/1:49:29,20:29:1036:20:720:-49.0472,0,-78.8034	0/1:124:67,57:67:2404:57:1999:-139.225,0,-179.241	0/1:101:50,51:50:1792:51:1824:-129.303,0,-131.158	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.227	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.269	0/1:59:21,38:21:756:38:1353:-102.989,0,-50.6065	0/0:113:113,0:113:4029:0:0:0,-34.0164,-362.779	0/1:104:54,50:54:1921:50:1751:-124.028,0,-141.857	0/1:136:74,62:74:2660:62:2213:-154.194,0,-198.705	0/0:84:83,1:83:2957:1:36:0,-21.69,-262.762	0/1:19:17,2:17:593:2:72:-1.06337,0,-47.9747	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.73	0/1:114:55,59:55:1949:59:2101:-150.977,0,-141.363	0/1:10:6,4:6:216:4:136:-9.4618,0,-16.7439	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.3208	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9015	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/1:151:60,91:60:2156:91:3242:-241.405,0,-148.829	0/0:143:141,2:141:4992:2:72:0,-36.3051,-442.682	0/1:20:2,18:2:72:18:644:-51.0935,0,-0.816122	0/0:143:143,0:143:5098:0:0:0,-43.0473,-458.957	0/0:174:170,3:170:6104:3:104:0,-42.8429,-539.816	0/1:87:38,49:38:1364:49:1703:-125.413,0,-96.8702	0/1:65:30,35:30:1061:35:1233:-89.8717,0,-76.2324	0/0:156:155,1:155:5533:1:36:0,-43.4122,-494.532	0/0:128:126,2:126:4494:2:57:0,-33.3202,-398.637	0/0:105:104,1:104:3736:1:36:0,-28.0495,-332.881	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.968	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.67	0/1:19:10,9:10:360:9:324:-23.3783,0,-27.0247	0/0:81:81,0:81:2866:0:0:0,-24.3834,-258.14	0/1:108:50,58:50:1777:58:2065:-151.209,0,-127.7	0/0:270:269,0:269:9531:0:0:0,-80.9771,-857.351	0/1:174:75,99:75:2677:99:3471:-255.744,0,-188.794	0/1:74:36,38:36:1277:38:1315:-95.1853,0,-92.9084	0/0:131:128,2:128:4577:2:72:0,-32.6215,-405.385	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:68:68,0:68:2402:0:0:0,-20.47,-216.389	0/0:79:78,1:78:2792:1:36:0,-20.2228,-247.962	0/0:254:254,0:254:9051:0:0:0,-76.4616,-814.52	0/1:77:42,35:42:1489:35:1237:-87.0155,0,-111.123	0/0:139:138,1:138:4937:1:36:0,-38.2453,-440.869	0/1:92:41,51:41:1457:51:1813:-132.71,0,-103.729	0/1:146:82,64:82:2940:64:2292:-158.601,0,-220.882	0/1:20:13,7:13:468:7:248:-16.4112,0,-36.439	0/1:59:34,25:34:1209:25:896:-61.8911,0,-91.3488	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/1:110:50,60:50:1783:60:2137:-155.653,0,-127.639	0/1:170:89,81:89:3175:81:2889:-205.174,0,-234.415	0/1:79:35,44:35:1237:44:1580:-116.8,0,-87.8509	0/0:118:118,0:118:4176:0:0:0,-35.5215,-375.97	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.746
chr06	32576769	.	A	G	110196	PASS	AB=0.416426;ABP=276.316;AC=140;AF=0.744681;AN=188;AO=5564;CIGAR=1X;DP=8228;DPB=8228;DPRA=22.1075;EPP=12085.1;EPPR=5768.27;GTI=4;LEN=1;MEANALT=1.09677;MQM=51.1265;MQMR=59.9861;NS=94;NUMALT=1;ODDS=0.627022;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196073;QR=94643;RO=2655;RPL=0;RPP=12085.1;RPPR=5768.27;RPR=5564;RUN=1;SAF=0;SAP=12085.1;SAR=5564;SRF=0;SRP=5768.27;SRR=2655;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:16,7:16:572:7:248:-15.7263,0,-44.8897	0/1:153:82,71:82:2929:71:2523:-181.11,0,-217.785	0/1:151:94,57:94:3354:57:2023:-136.457,0,-256.621	1/1:140:0,140:0:0:140:5000:-447.119,-42.1442,0	1/1:44:2,42:2:72:42:1494:-127.273,-6.4198,0	1/1:34:1,33:1:36:33:1156:-100.68,-6.63675,0	1/1:91:0,91:0:0:91:3235:-289.26,-27.3937,0	0/1:110:67,43:67:2391:43:1529:-104.464,0,-182.334	1/1:34:0,34:0:0:34:1168:-105.332,-10.235,0	0/1:77:53,24:53:1876:24:834:-51.7004,0,-145.94	0/1:71:35,36:35:1247:36:1271:-92.887,0,-91.1609	1/1:55:0,55:0:0:55:1897:-170.725,-16.5567,0	1/1:72:0,72:0:0:72:2520:-226.751,-21.6742,0	0/1:107:49,58:49:1747:58:2028:-149.838,0,-125.303	0/1:65:36,29:36:1288:29:1022:-72.056,0,-96.6566	1/1:55:0,55:0:0:55:1886:-169.358,-16.5567,0	1/1:94:0,94:0:0:94:3300:-296.771,-28.2968,0	1/1:76:0,76:0:0:76:2669:-238.549,-22.8783,0	0/1:61:31,30:31:1099:30:1035:-74.9878,0,-80.8566	0/1:170:102,68:102:3633:68:2411:-165.229,0,-276	1/1:64:0,64:0:0:64:2255:-202.169,-19.2659,0	1/1:108:0,108:0:0:108:3835:-342.161,-32.5112,0	0/1:110:62,48:62:2228:48:1686:-117.892,0,-167.671	1/1:67:0,67:0:0:67:2350:-209.979,-20.169,0	0/1:88:51,37:51:1821:37:1316:-91.8852,0,-137.679	1/1:249:0,249:0:0:249:8808:-786.585,-74.9565,0	0/1:179:105,74:105:3752:74:2579:-177.297,0,-283.996	0/1:39:24,15:24:864:15:532:-36.2294,0,-66.3424	0/1:234:139,95:139:4987:95:3379:-231.085,0,-378.535	0/1:136:83,53:83:2968:53:1891:-127.799,0,-226.413	0/1:143:83,59:83:2948:59:2081:-143.571,0,-222.448	0/1:11:7,4:7:252:4:140:-9.5912,0,-19.7176	1/1:17:0,17:0:0:17:597:-53.4578,-5.11751,0	1/1:7:0,7:0:0:7:248:-22.4388,-2.10721,0	1/1:19:0,19:0:0:19:680:-61.4859,-5.71957,0	1/1:14:0,14:0:0:14:491:-44.4987,-4.21442,0	0/1:202:91,111:91:3252:111:3880:-286.377,0,-232.093	1/1:151:0,151:0:0:151:5290:-473.018,-45.4555,0	0/1:100:56,43:56:1975:43:1504:-105.409,0,-147.86	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:173:109,63:109:3855:63:2248:-149.593,0,-295.008	0/1:60:32,28:32:1139:28:972:-69.3649,0,-84.7566	0/1:154:101,53:101:3566:53:1829:-117.829,0,-274.787	0/1:70:45,25:45:1616:25:861:-56.0299,0,-124.658	1/1:69:0,69:0:0:69:2398:-214.764,-20.7711,0	1/1:101:0,100:0:0:100:3581:-319.335,-30.103,0	0/1:112:68,44:68:2416:44:1563:-107.151,0,-183.979	1/1:125:2,123:2:72:123:4355:-383.706,-30.792,0	0/1:117:72,44:72:2572:44:1546:-103.49,0,-196.452	0/1:167:109,58:109:3881:58:2075:-134.696,0,-299.213	1/1:49:1,48:1:36:48:1693:-147.798,-11.1522,0	0/1:11:7,4:7:248:4:144:-9.94595,0,-19.3529	1/1:189:0,189:0:0:189:6677:-599.594,-56.8947,0	0/1:81:39,42:39:1383:42:1480:-108.441,0,-100.385	0/1:24:15,9:15:528:9:324:-22.2056,0,-40.6266	1/1:77:0,76:0:0:76:2687:-240.911,-22.8783,0	1/1:27:0,27:0:0:27:953:-85.5373,-8.12781,0	1/1:4:0,4:0:0:4:144:-13.2414,-1.20412,0	1/1:9:0,9:0:0:9:320:-28.993,-2.70927,0	0/1:124:81,43:81:2890:43:1481:-95.196,0,-223.008	1/1:146:0,146:0:0:146:5122:-458.124,-43.9504,0	0/1:3:2,1:2:72:1:32:-2.29009,0,-5.93363	1/1:168:2,166:2:72:166:5847:-515.665,-43.7363,0	1/1:97:4,93:4:144:93:3258:-278.342,-15.8863,0	0/1:58:44,14:44:1576:14:491:-26.7137,0,-124.672	0/1:79:37,42:37:1328:42:1478:-108.776,0,-96.0409	1/1:123:7,115:7:243:115:4032:-338.04,-14.9824,0	1/1:125:0,125:0:0:125:4418:-395.436,-37.6288,0	1/1:39:0,39:0:0:39:1384:-123.825,-11.7402,0	1/1:58:0,57:0:0:57:1962:-176.212,-17.1587,0	1/1:99:0,99:0:0:99:3518:-313.894,-29.802,0	0/1:21:12,9:12:424:9:324:-23.0594,0,-32.1748	1/1:118:0,118:0:0:118:4151:-372.656,-35.5215,0	0/1:45:30,15:30:1048:15:531:-34.5423,0,-81.081	1/1:122:0,121:0:0:121:4242:-378.865,-36.4246,0	0/1:129:81,48:81:2889:48:1716:-115.019,0,-221.412	0/1:126:79,47:79:2820:47:1672:-112.73,0,-216.107	1/1:75:3,72:3:108:72:2572:-221.387,-12.5021,0	1/1:6:0,6:0:0:6:212:-19.412,-1.80618,0	1/1:67:0,67:0:0:67:2366:-211.98,-20.169,0	1/1:60:0,60:0:0:60:2125:-191.287,-18.0618,0	1/1:104:3,101:3:104:101:3576:-310.778,-21.6043,0	0/1:83:43,40:43:1510:40:1389:-99.2243,0,-111.206	1/1:51:0,51:0:0:51:1783:-159.842,-15.3525,0	0/1:75:37,38:37:1328:38:1348:-98.1051,0,-97.245	0/1:116:63,53:63:2264:53:1888:-134.385,0,-169.103	0/1:45:21,24:21:741:24:852:-63.3504,0,-53.4652	0/1:57:34,23:34:1212:23:792:-54.2953,0,-92.2276	1/1:77:0,77:0:0:77:2684:-241.393,-23.1793,0	0/1:98:53,45:53:1904:45:1577:-111.833,0,-142.137	0/1:186:98,88:98:3508:88:3086:-220.659,0,-259.934	0/1:61:47,14:47:1675:14:504:-27.145,0,-132.674	1/1:57:1,56:1:36:56:1998:-175.092,-13.5604,0	1/1:86:0,86:0:0:86:3021:-270.703,-25.8886,0
chr06	32576797	.	T	G	114815	PASS	AB=0.421982;ABP=242.562;AC=140;AF=0.744681;AN=188;AO=5641;CIGAR=1X;DP=8283;DPB=8283;DPRA=22.2554;EPP=12252.3;EPPR=5724.84;GTI=5;LEN=1;MEANALT=1.02151;MQM=51.1432;MQMR=59.9776;NS=94;NUMALT=1;ODDS=2.01798;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201810;QR=93438;RO=2639;RPL=5641;RPP=12252.3;RPPR=5724.84;RPR=0;RUN=1;SAF=0;SAP=12252.3;SAR=5641;SRF=0;SRP=5733.53;SRR=2639;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:15,7:15:531:7:248:-16.0287,0,-41.4992	0/1:153:80,73:80:2823:73:2599:-187.839,0,-208.248	0/1:154:96,58:96:3368:58:2076:-140.316,0,-256.976	1/1:142:0,142:0:0:142:5074:-454.526,-42.7463,0	1/1:45:1,44:1:36:44:1569:-137.252,-9.94808,0	1/1:36:1,35:1:36:35:1252:-109.314,-7.23881,0	1/1:90:0,90:0:0:90:3236:-289.314,-27.0927,0	0/1:112:68,44:68:2413:44:1557:-106.446,0,-183.71	1/1:34:0,34:0:0:34:1224:-110.173,-10.235,0	0/1:78:54,24:54:1921:24:864:-54.0576,0,-149.68	0/1:69:35,34:35:1252:34:1216:-88.5446,0,-92.214	1/1:56:0,56:0:0:56:2009:-180.784,-16.8577,0	1/1:72:0,72:0:0:72:2567:-230.904,-21.6742,0	0/1:106:47,59:47:1688:59:2103:-156.949,0,-120.298	0/1:64:35,29:35:1233:29:1040:-73.8254,0,-92.0062	1/1:57:0,57:0:0:57:2044:-183.311,-17.1587,0	1/1:94:0,94:0:0:94:3361:-302.16,-28.2968,0	1/1:77:0,77:0:0:77:2759:-246.631,-23.1793,0	0/1:61:30,31:30:1061:31:1099:-80.6873,0,-77.4365	0/1:169:101,68:101:3530:68:2436:-167.728,0,-267.031	1/1:65:0,65:0:0:65:2319:-207.9,-19.567,0	1/1:110:0,110:0:0:110:3941:-351.016,-33.1133,0	0/1:110:61,49:61:2094:49:1747:-123.346,0,-155.607	1/1:66:0,66:0:0:66:2338:-209.659,-19.868,0	0/1:87:50,37:50:1796:37:1323:-92.7996,0,-135.733	1/1:252:1,251:1:21:251:8991:-800.466,-73.7702,0	0/1:175:102,73:102:3630:73:2599:-180.035,0,-274.223	0/1:39:23,16:23:809:16:572:-39.8128,0,-61.3881	0/1:238:138,100:138:4888:100:3592:-248.198,0,-368.425	0/1:133:82,51:82:2940:51:1809:-121.77,0,-224.797	0/1:143:85,58:85:2988:58:2076:-142.984,0,-226.101	0/1:13:8,5:8:284:5:180:-12.5724,0,-21.99	1/1:18:0,18:0:0:18:632:-56.806,-5.41854,0	1/1:7:0,7:0:0:7:239:-21.7164,-2.10721,0	1/1:19:0,19:0:0:19:680:-61.4859,-5.71957,0	1/1:14:0,14:0:0:14:504:-45.6722,-4.21442,0	0/1:208:95,113:95:3404:113:4052:-299.849,0,-243.959	1/1:149:0,149:0:0:149:5340:-477.055,-44.8535,0	0/1:99:53,46:53:1893:46:1621:-116.264,0,-140.844	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:176:109,65:109:3872:65:2336:-156.87,0,-295.807	0/1:59:30,29:30:1046:29:1044:-75.9879,0,-76.6851	0/1:155:101,54:101:3548:54:1928:-126.348,0,-272.867	0/1:70:44,26:44:1584:26:936:-62.7127,0,-121.779	1/1:71:0,71:0:0:71:2536:-226.742,-21.3731,0	1/1:101:0,101:0:0:101:3607:-322.056,-30.404,0	0/1:114:68,46:68:2421:46:1656:-114.906,0,-183.827	1/1:129:2,127:2:72:127:4556:-400.985,-31.9961,0	0/1:117:72,45:72:2539:45:1616:-109.689,0,-193.537	0/1:170:110,60:110:3865:60:2148:-140.332,0,-296.868	1/1:50:1,49:1:36:49:1760:-153.753,-11.4532,0	0/1:11:7,4:7:237:4:144:-9.94595,0,-18.3477	1/1:190:0,190:0:0:190:6801:-610.628,-57.1957,0	0/1:78:35,42:35:1215:42:1512:-112.115,0,-86.1084	0/1:25:15,10:15:525:10:356:-24.7791,0,-40.0523	1/1:79:0,79:0:0:79:2820:-253.083,-23.7814,0	1/1:24:0,24:0:0:24:864:-77.7723,-7.22472,0	1/1:4:0,4:0:0:4:144:-13.2414,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.3459,-2.70927,0	0/1:123:80,43:80:2849:43:1540:-100.566,0,-219.62	1/1:151:0,151:0:0:151:5407:-483.567,-45.4555,0	0/1:3:2,1:2:72:1:36:-2.67996,0,-5.93363	1/1:173:1,172:1:36:172:6176:-548.098,-48.4799,0	1/1:97:2,95:2:72:95:3404:-297.636,-22.3632,0	0/1:58:44,14:44:1538:14:496:-27.286,0,-121.248	0/1:80:37,43:37:1313:43:1540:-114.029,0,-94.3873	1/1:124:5,119:5:165:119:4247:-364.054,-22.1541,0	1/1:126:0,126:0:0:126:4516:-404.058,-37.9298,0	1/1:39:0,39:0:0:39:1400:-125.24,-11.7402,0	1/1:57:0,57:0:0:57:2044:-183.938,-17.1587,0	1/1:99:0,99:0:0:99:3542:-316.067,-29.802,0	0/1:20:12,8:12:432:8:288:-20.1357,0,-33.2006	1/1:117:0,117:0:0:117:4189:-375.895,-35.2205,0	0/1:45:31,14:31:1093:14:500:-31.7583,0,-85.1313	1/1:119:0,119:0:0:119:4264:-381.779,-35.8226,0	0/1:131:82,49:82:2899:49:1751:-117.547,0,-221.708	0/1:131:80,51:80:2849:51:1813:-123.791,0,-217.212	1/1:76:3,73:3:108:73:2620:-225.698,-12.8031,0	1/1:6:0,6:0:0:6:216:-19.7762,-1.80618,0	1/1:69:0,69:0:0:69:2472:-221.209,-20.7711,0	1/1:60:0,60:0:0:60:2128:-191.653,-18.0618,0	1/1:105:2,103:2:57:103:3652:-321.947,-26.1948,0	0/1:84:43,41:43:1544:41:1468:-105.838,0,-113.967	1/1:51:0,51:0:0:51:1826:-163.69,-15.3525,0	0/1:74:37,37:37:1302:37:1328:-96.4772,0,-95.2011	0/1:115:62,53:62:2209:53:1892:-135.037,0,-164.455	0/1:47:23,24:23:820:24:864:-63.8263,0,-59.9741	0/1:61:36,25:36:1281:25:881:-61.0865,0,-97.2284	1/1:77:0,77:0:0:77:2760:-248.216,-23.1793,0	0/1:99:51,48:51:1821:48:1728:-124.834,0,-134.367	0/1:190:101,89:101:3598:89:3188:-228.516,0,-266.824	0/1:62:46,16:46:1637:16:568:-32.5837,0,-128.953	1/1:56:0,56:0:0:56:2012:-179.949,-16.8577,0	1/1:86:0,86:0:0:86:3078:-275.562,-25.8886,0
chr06	32595810	.	T	A	35813.3	PASS	AB=0.502864;ABP=3.25904;AC=46;AF=0.244681;AN=188;AO=1781;CIGAR=1X;DP=7243;DPB=7243;DPRA=1.22979;EPP=2047.71;EPPR=4648.96;GTI=2;LEN=1;MEANALT=1.03922;MQM=59.9585;MQMR=59.9663;NS=94;NUMALT=1;ODDS=2.79426;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63666;QR=194899;RO=5454;RPL=1538;RPP=2047.71;RPPR=4648.96;RPR=243;RUN=1;SAF=1781;SAP=3870.4;SAR=0;SRF=5454;SRP=11846.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:464:14:500:-37.2084,0,-33.9697	0/1:64:33,31:33:1184:31:1108:-80.7651,0,-87.6024	0/1:100:39,61:39:1404:61:2159:-164.471,0,-96.5563	0/0:171:171,0:171:6106:0:0:0,-51.4761,-549.642	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/1:94:56,38:56:2004:38:1360:-94.4038,0,-152.337	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.519	0/1:81:44,37:44:1557:37:1328:-95.4388,0,-116.036	0/1:37:14,23:14:500:23:816:-62.6236,0,-34.1981	0/0:107:107,0:107:3826:0:0:0,-32.2102,-344.536	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/1:77:40,37:40:1436:37:1315:-95.4717,0,-106.358	0/1:48:23,25:23:828:25:900:-66.8716,0,-60.3947	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/1:35:22,13:22:783:13:464:-31.5615,0,-60.2569	0/1:173:85,88:85:3047:88:3156:-232.186,0,-222.336	0/0:149:149,0:149:5316:0:0:0,-44.8535,-478.545	0/0:106:105,1:105:3764:1:36:0,-28.3109,-335.361	0/1:118:51,67:51:1828:67:2400:-180.735,0,-129.262	0/0:42:41,0:41:1460:0:0:0,-12.3422,-131.279	0/1:57:30,26:30:1071:26:936:-67.342,0,-79.4842	0/0:241:240,1:240:8553:1:36:0,-68.95,-766.171	0/1:130:74,56:74:2611:56:1991:-140.33,0,-196.103	0/1:32:18,14:18:626:14:504:-36.0651,0,-47.0304	0/1:150:84,66:84:2987:66:2364:-167.864,0,-223.908	0/1:163:97,66:97:3472:66:2368:-164.31,0,-263.624	0/1:109:56,53:56:1993:53:1885:-137.115,0,-146.83	0/1:12:6,6:6:216:6:200:-14.7147,0,-16.1782	0/0:19:16,0:16:572:0:0:0,-4.81648,-51.454	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:265:124,141:124:4421:141:5050:-374.872,0,-318.289	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/1:49:18,31:18:644:31:1101:-84.6488,0,-43.5401	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:126:51,75:51:1828:75:2674:-202.97,0,-126.871	0/1:27:9,18:9:324:18:639:-49.7104,0,-21.378	0/1:80:54,25:54:1920:25:896:-56.8197,0,-148.937	0/1:66:29,37:29:1027:37:1320:-99.234,0,-72.8742	0/0:78:77,0:77:2756:0:0:0,-23.1793,-247.922	0/0:73:73,0:73:2595:0:0:0,-21.9752,-233.799	0/1:102:54,48:54:1928:48:1716:-124.021,0,-143.092	0/0:131:131,0:131:4692:0:0:0,-39.4349,-422.44	0/1:77:36,41:36:1292:41:1472:-109.597,0,-93.4045	0/1:96:56,40:56:2008:40:1440:-100.997,0,-152.094	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.008	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/0:80:80,0:80:2847:0:0:0,-24.0824,-256.362	0/1:53:30,23:30:1064:23:820:-58.1679,0,-80.1171	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:100:100,0:100:3568:0:0:0,-30.103,-321.284	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.631	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:87:47,40:47:1684:40:1428:-102.623,0,-125.613	0/0:93:93,0:93:3312:0:0:0,-27.9958,-298.297	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:206:206,0:206:7356:0:0:0,-62.0122,-662.088	0/0:157:154,3:154:5515:3:104:0,-37.5589,-486.77	0/1:57:28,29:28:1000:29:1032:-76.0302,0,-73.1567	0/1:36:15,21:15:540:21:752:-57.1692,0,-38.0995	0/0:133:128,5:128:4596:5:180:0,-23.4849,-397.251	0/0:122:117,5:117:4179:5:180:0,-20.1736,-359.738	0/0:38:36,2:36:1273:2:68:0,-4.98143,-108.413	0/0:22:21,0:21:752:0:0:0,-6.32163,-67.6465	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.794	0/1:19:6,13:6:212:13:464:-36.3779,0,-13.7052	0/0:194:194,0:194:6902:0:0:0,-58.3998,-621.249	0/1:70:30,40:30:1071:40:1428:-107.742,0,-75.6295	0/0:133:133,0:133:4734:0:0:0,-40.037,-426.22	0/1:70:35,35:35:1260:35:1253:-92.0026,0,-92.6334	0/1:55:25,30:25:900:30:1072:-80.2303,0,-64.7644	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.464	0/0:170:170,0:170:6112:0:0:0,-51.1751,-550.177	0/1:53:17,36:17:612:36:1288:-100.264,0,-39.4588	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:39:23,16:23:824:16:568:-39.7104,0,-62.7431	0/1:177:88,89:88:3133:89:3188:-233.861,0,-228.913	0/1:32:11,21:11:396:21:756:-58.7343,0,-26.3416	0/1:121:61,60:61:2188:60:2148:-157.163,0,-160.761	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/1:43:21,22:21:756:22:792:-58.6614,0,-55.4229	0/1:95:50,45:50:1796:45:1607:-116.322,0,-133.324	0/1:83:29,54:29:1040:54:1940:-149.891,0,-68.9265	0/0:97:97,0:97:3476:0:0:0,-29.1999,-312.994	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621
chr06	32595819	.	T	C	114971	PASS	AB=0.50493;ABP=3.73832;AC=142;AF=0.755319;AN=188;AO=5488;CIGAR=1X;DP=7224;DPB=7224;DPRA=9.69892;EPP=11911.4;EPPR=3759.66;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9743;MQMR=59.9538;NS=94;NUMALT=1;ODDS=4.82495;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195218;QR=61501;RO=1730;RPL=5487;RPP=11911.4;RPPR=3759.66;RPR=1;RUN=1;SAF=5488;SAP=11920.1;SAR=0;SRF=1730;SRP=3759.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:13,12:13:468:12:424:-30.9707,0,-34.9339	0/1:62:31,31:31:1086:31:1112:-81.7275,0,-79.3812	0/1:99:60,39:60:2136:39:1404:-96.8573,0,-162.698	1/1:169:0,166:0:0:166:5929:-533.36,-49.971,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:29:0,29:0:0:29:1021:-92.2003,-8.72987,0	1/1:121:0,121:0:0:121:4297:-386.906,-36.4246,0	0/1:94:37,57:37:1316:57:2030:-154.674,0,-90.445	1/1:72:0,72:0:0:72:2561:-230.739,-21.6742,0	0/1:80:36,44:36:1288:44:1576:-118.049,0,-92.1412	0/1:35:21,14:21:747:14:496:-34.4382,0,-57.0183	1/1:109:0,109:0:0:109:3875:-348.944,-32.8123,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	0/1:77:35,42:35:1247:42:1477:-110.041,0,-89.3548	0/1:47:23,24:23:813:24:846:-62.3094,0,-59.3407	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:34:12,22:12:424:22:784:-60.6489,0,-28.2614	0/1:172:87,85:87:3116:85:3033:-221.422,0,-228.889	1/1:147:0,147:0:0:147:5220:-469.934,-44.2514,0	1/1:107:1,106:1:36:106:3764:-335.361,-28.6119,0	0/1:119:67,52:67:2387:52:1859:-131.749,0,-179.265	1/1:42:0,42:0:0:42:1490:-134.378,-12.6433,0	0/1:57:26,31:26:932:31:1103:-82.4211,0,-67.0402	1/1:247:1,246:1:36:246:8763:-785.064,-70.7561,0	0/1:130:56,74:56:1991:74:2633:-198.078,0,-140.33	0/1:32:14,18:14:500:18:648:-49.0189,0,-35.7032	0/1:150:62,88:62:2197:88:3139:-237.581,0,-152.84	0/1:165:68,97:68:2406:97:3424:-258.704,0,-167.126	0/1:108:51,57:51:1823:57:2043:-151.63,0,-131.839	0/1:11:6,5:6:216:5:161:-11.4952,0,-16.4792	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	0/1:265:136,129:136:4813:129:4541:-329.088,0,-353.554	1/1:98:0,98:0:0:98:3476:-313.052,-29.5009,0	0/1:49:30,19:30:1036:19:680:-46.7787,0,-78.7954	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:126:75,51:75:2665:51:1802:-124.531,0,-202.031	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5241	0/1:75:23,52:23:820:52:1872:-146.182,0,-51.5453	0/1:66:34,31:34:1212:31:1095:-78.9325,0,-89.4596	1/1:78:0,78:0:0:78:2768:-249.36,-23.4803,0	1/1:74:0,74:0:0:74:2647:-238.476,-22.2762,0	0/1:101:49,52:49:1756:52:1851:-136.465,0,-127.92	1/1:134:0,134:0:0:134:4765:-429.009,-40.338,0	0/1:73:38,35:38:1360:35:1251:-90.9191,0,-100.725	0/1:93:38,55:38:1364:55:1964:-149.039,0,-95.0626	1/1:98:0,98:0:0:98:3484:-313.771,-29.5009,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:79:0,78:0:0:78:2800:-252.018,-23.4803,0	0/1:52:22,30:22:788:30:1072:-81.1389,0,-55.5912	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:98:0,98:0:0:98:3489:-314.214,-29.5009,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:83:39,44:39:1359:44:1571:-116.695,0,-97.6191	1/1:93:0,93:0:0:93:3318:-298.838,-27.9958,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:210:0,209:0:0:209:7456:-670.724,-62.9153,0	1/1:156:3,153:3:108:153:5444:-480.013,-36.8855,0	0/1:54:26,28:26:932:28:1008:-74.7807,0,-67.9386	0/1:34:20,14:20:708:14:500:-35.1012,0,-53.8106	1/1:135:5,130:5:171:130:4638:-401.858,-24.9136,0	1/1:121:5,116:5:180:116:4151:-357.22,-19.8726,0	1/1:35:1,34:1:36:34:1220:-106.509,-6.93778,0	1/1:24:0,24:0:0:24:840:-75.9154,-7.22472,0	1/1:38:0,38:0:0:38:1336:-120.536,-11.4391,0	0/1:19:12,7:12:432:7:244:-16.5799,0,-33.5016	1/1:201:0,201:0:0:201:7159:-644.368,-60.507,0	0/1:69:38,31:38:1337:31:1076:-76.3738,0,-99.8487	1/1:131:0,131:0:0:131:4675:-420.912,-39.4349,0	0/1:68:36,32:36:1279:32:1144:-82.7995,0,-94.9424	0/1:57:30,27:30:1068:27:943:-68.0223,0,-79.2596	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:81:0,81:0:0:81:2868:-258.354,-24.3834,0	1/1:168:0,168:0:0:168:5988:-539.027,-50.573,0	0/1:55:38,17:38:1359:17:593:-37.1381,0,-106.049	1/1:47:0,47:0:0:47:1673:-150.855,-14.1484,0	0/1:39:16,23:16:560:23:796:-60.2148,0,-38.984	0/1:176:87,89:87:3084:89:3160:-231.641,0,-224.806	0/1:30:19,11:19:680:11:392:-26.5809,0,-52.4983	0/1:115:54,61:54:1902:61:2143:-158.518,0,-136.838	1/1:64:0,64:0:0:64:2269:-204.471,-19.2659,0	0/1:41:20,21:20:711:21:747:-55.2121,0,-51.9734	0/1:94:44,50:44:1572:50:1763:-130.653,0,-113.475	0/1:83:54,29:54:1932:29:991:-64.5051,0,-149.171	1/1:97:0,97:0:0:97:3443:-310.082,-29.1999,0	1/1:92:0,92:0:0:92:3262:-293.799,-27.6948,0
chr06	32595904	.	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chr06	32667710	.	A	T	56359.3	PASS	AB=0.544567;ABP=56.044;AC=57;AF=0.306452;AN=186;AO=2914;CIGAR=1X;DP=7702;DPB=7702;DPRA=1.23711;EPP=6330.68;EPPR=10332.8;GTI=6;LEN=1;MEANALT=1.07407;MQM=59.9547;MQMR=59.9969;NS=93;NUMALT=1;ODDS=0.364775;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104413;QR=168179;RO=4781;RPL=0;RPP=6330.68;RPPR=10332.8;RPR=2914;RUN=1;SAF=2914;SAP=6330.68;SAR=0;SRF=4781;SRP=10384.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:16,20:16:549:20:716:-53.9306,0,-38.8954	0/1:66:30,36:30:1076:36:1292:-96.7149,0,-77.2849	0/1:122:53,69:53:1881:69:2467:-185.558,0,-132.841	0/0:79:79,0:79:2741:0:0:0,-23.7814,-246.928	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.169	0/0:36:36,0:36:1265:0:0:0,-10.8371,-114.151	0/0:68:68,0:68:2417:0:0:0,-20.47,-217.785	0/1:82:51,31:51:1820:31:1116:-76.0672,0,-139.397	0/0:68:68,0:68:2383:0:0:0,-20.47,-214.722	0/1:54:26,27:26:913:27:968:-71.123,0,-66.1699	0/1:218:23,195:23:812:195:7007:-565.064,0,-7.77638	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/1:67:24,43:24:856:43:1540:-118.716,0,-57.1921	0/1:41:25,16:25:892:16:576:-39.8328,0,-68.2575	0/0:75:75,0:75:2648:0:0:0,-22.5772,-238.569	0/0:34:33,0:33:1172:0:0:0,-9.93399,-105.515	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/1:64:15,49:15:536:49:1760:-139.416,0,-29.3089	0/1:100:37,63:37:1316:63:2253:-172.928,0,-88.6388	0/0:167:167,0:167:5829:0:0:0,-50.272,-524.73	0/0:87:87,0:87:3051:0:0:0,-26.1896,-274.818	0/1:77:38,39:38:1315:39:1392:-102.4,0,-95.464	0/0:59:59,0:59:2074:0:0:0,-17.7608,-186.927	0/1:39:15,24:15:536:24:864:-66.3424,0,-36.8346	0/0:162:162,0:162:5644:0:0:0,-48.7669,-508.085	0/1:191:89,102:89:3158:102:3664:-272.465,0,-226.947	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:153:85,68:85:2908:68:2436:-173.437,0,-215.892	0/1:77:41,36:41:1407:36:1283:-92.5933,0,-103.74	0/1:103:54,49:54:1871:49:1760:-127.678,0,-137.657	1/1:284:5,278:5:180:278:9974:-880.969,-68.9993,0	0/1:23:19,4:19:661:4:140:-6.02089,0,-52.8879	.:.:.:.:.:.:.:.	0/0:2:2,0:2:53:0:0:0,-0.60206,-5.0343	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:132:70,61:70:2477:61:2176:-156.308,0,-183.388	0/0:126:126,0:126:4436:0:0:0,-37.9298,-399.412	0/1:130:19,111:19:680:111:3976:-318.893,0,-22.3953	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	0/1:66:36,30:36:1284:30:1076:-77.2849,0,-95.9954	0/1:31:8,23:8:284:23:820:-64.7824,0,-16.5714	0/1:104:54,50:54:1924:50:1792:-130.255,0,-142.13	0/1:35:20,15:20:690:15:540:-38.4005,0,-51.8808	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/0:94:94,0:94:3313:0:0:0,-28.2968,-298.391	0/1:78:40,38:40:1360:38:1356:-98.8601,0,-99.2081	0/0:125:125,0:125:4427:0:0:0,-37.6287,-398.601	0/1:56:28,28:28:1004:28:1004:-73.8182,0,-73.8182	0/1:83:46,37:46:1598:37:1328:-94.8367,0,-119.12	0/0:120:120,0:120:4232:0:0:0,-36.1236,-381.059	1/1:97:6,91:6:216:91:3253:-273.2,-9.4094,0	0/0:135:135,0:135:4748:0:0:0,-40.639,-427.48	0/1:57:24,33:24:792:33:1169:-88.3566,0,-54.4227	1/1:211:6,205:6:216:205:7352:-641.93,-43.7268,0	0/0:78:78,0:78:2720:0:0:0,-23.4803,-245.04	0/0:58:58,0:58:2004:0:0:0,-17.4597,-180.627	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:72:37,35:37:1320:35:1260:-92.0313,0,-97.4278	0/0:82:81,0:81:2862:0:0:0,-24.3834,-257.456	1/1:96:0,96:0:0:96:3433:-309.182,-28.8989,0	0/0:74:74,0:74:2610:0:0:0,-22.2762,-235.146	0/0:152:148,4:148:5257:4:144:0,-32.4429,-459.956	0/1:47:26,21:26:909:21:756:-54.2188,0,-67.975	0/1:38:23,15:23:794:15:525:-36.1389,0,-60.3342	0/0:126:124,2:124:4292:2:72:0,-31.0931,-379.621	0/0:192:189,3:189:6633:3:108:0,-47.7226,-586.982	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/0:60:60,0:60:2106:0:0:0,-18.0618,-189.806	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	1/1:288:6,282:6:193:282:10101:-891.333,-69.011,0	0/0:108:107,0:107:3740:0:0:0,-32.2102,-336.59	0/1:51:22,29:22:776:29:1044:-78.9161,0,-54.8096	0/0:204:204,0:204:7131:0:0:0,-61.4101,-641.856	0/1:114:57,57:57:2025:57:2040:-149.555,0,-148.203	0/1:81:35,46:35:1244:46:1652:-124.584,0,-87.8812	0/0:46:45,1:45:1612:1:36:0,-10.2495,-141.772	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:61:61,0:61:2153:0:0:0,-18.3628,-194.036	0/0:77:77,0:77:2730:0:0:0,-23.1793,-245.941	0/0:122:122,0:122:4273:0:0:0,-36.7257,-384.748	0/1:61:34,27:34:1200:27:964:-68.7106,0,-89.9428	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:41:26,15:26:932:15:540:-36.5943,0,-71.8566	0/1:74:40,34:40:1428:34:1220:-87.8306,0,-106.541	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:43:19,24:19:669:24:864:-65.1365,0,-47.5897	0/0:39:39,0:39:1377:0:0:0,-11.7402,-124.227	1/1:247:18,228:18:629:228:8157:-675.848,-17.4789,0	0/1:72:31,41:31:1100:41:1476:-111.462,0,-77.6361	0/1:41:23,18:23:820:18:648:-46.3097,0,-61.7803	0/0:88:88,0:88:3098:0:0:0,-26.4906,-279.039	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579
chr06	32667719	.	A	G	55191.7	PASS	AB=0.531833;ABP=30.3834;AC=57;AF=0.306452;AN=186;AO=2886;CIGAR=1X;DP=7913;DPB=7913;DPRA=1.19722;EPP=6269.88;EPPR=10769.7;GTI=4;LEN=1;MEANALT=1.01786;MQM=59.9508;MQMR=59.9893;NS=93;NUMALT=1;ODDS=0.658649;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103092;QR=180361;RO=5026;RPL=0;RPP=6269.88;RPPR=10769.7;RPR=2886;RUN=1;SAF=2886;SAP=6269.88;SAR=0;SRF=5026;SRP=10916.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:16,20:16:576:20:716:-53.9306,0,-41.3379	0/1:68:33,35:33:1188:35:1252:-92.5141,0,-86.7586	0/1:126:58,68:58:2088:68:2432:-181.206,0,-150.26	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.024	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/1:87:55,32:55:1976:32:1148:-77.4402,0,-151.925	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.62	0/1:56:28,28:28:1008:28:985:-72.1038,0,-74.1787	0/1:219:24,195:24:864:195:6961:-560.628,0,-12.157	0/0:61:60,1:60:2147:1:36:0,-14.7646,-189.899	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.646	0/1:68:26,42:26:936:42:1508:-115.537,0,-64.0894	0/1:41:25,16:25:900:16:576:-39.8328,0,-68.9788	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:64:15,49:15:540:49:1752:-138.696,0,-29.6706	0/1:96:36,60:36:1296:60:2152:-165.048,0,-88.0451	0/0:177:177,0:177:6341:0:0:0,-53.2823,-570.779	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.582	0/1:76:38,38:38:1368:38:1344:-98.3813,0,-100.543	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/1:40:15,25:15:540:25:896:-68.9192,0,-36.8953	0/0:174:174,0:174:6241:0:0:0,-52.3792,-561.412	0/1:193:93,100:93:3333:100:3565:-262.958,0,-242.087	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:157:89,68:89:3196:68:2428:-171.512,0,-240.601	0/1:78:42,36:42:1508:36:1296:-93.4636,0,-112.534	0/1:107:58,49:58:2073:49:1760:-126.474,0,-154.628	1/1:285:5,280:5:180:280:10013:-884.529,-69.2415,0	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/1:130:70,60:70:2512:60:2128:-152.651,0,-187.198	0/0:134:134,0:134:4801:0:0:0,-40.338,-432.243	0/1:132:21,111:21:756:111:3960:-316.847,0,-28.6313	1/1:51:0,51:0:0:51:1798:-162.099,-15.3525,0	0/1:64:36,28:36:1292:28:1000:-71.0495,0,-97.3178	0/1:31:8,23:8:288:23:799:-62.8923,0,-16.9355	0/1:108:58,50:58:2080:50:1770:-127.068,0,-154.959	0/1:38:23,15:23:824:15:540:-37.4974,0,-63.0442	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:101:101,0:101:3617:0:0:0,-30.404,-325.734	0/1:83:47,36:47:1692:36:1296:-91.9584,0,-127.581	0/0:132:132,0:132:4740:0:0:0,-39.736,-426.752	0/1:58:30,28:30:1072:28:1008:-73.5766,0,-79.3327	0/1:83:47,36:47:1688:36:1292:-91.5983,0,-127.221	0/0:126:126,0:126:4528:0:0:0,-37.9298,-407.685	1/1:97:6,91:6:216:91:3218:-270.048,-9.4094,0	0/0:138:138,0:138:4943:0:0:0,-41.5421,-445.019	0/1:58:26,32:26:928:32:1152:-86.5304,0,-66.3785	1/1:212:7,205:7:252:205:7319:-635.724,-40.7894,0	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:63:63,0:63:2233:0:0:0,-18.9649,-201.233	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:74:38,36:38:1364:36:1296:-94.6677,0,-100.784	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	1/1:95:0,95:0:0:95:3389:-305.224,-28.5979,0	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/0:157:153,4:153:5496:4:140:0,-34.3171,-481.82	0/1:47:26,21:26:936:21:752:-53.8578,0,-70.4111	0/1:36:22,14:22:792:14:504:-34.861,0,-60.7686	0/0:131:129,2:129:4636:2:72:0,-32.5982,-410.564	0/0:199:196,3:196:7021:3:108:0,-49.8298,-621.875	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	1/1:288:7,280:7:252:280:10037:-880.233,-63.7265,0	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/1:52:24,28:24:864:28:1004:-75.0161,0,-62.429	0/0:215:215,0:215:7700:0:0:0,-64.7214,-693.034	0/1:115:57,58:57:2044:58:2056:-150.691,0,-149.613	0/1:84:38,46:38:1368:46:1652:-123.681,0,-98.1343	0/0:50:49,1:49:1756:1:36:0,-11.4537,-154.726	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:125:124,1:124:4437:1:36:0,-34.0305,-395.901	0/1:62:35,27:35:1260:27:972:-69.1307,0,-95.0416	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:38:26,12:26:936:12:432:-27.7821,0,-73.1203	0/1:74:42,32:42:1504:32:1144:-80.9933,0,-113.378	0/1:10:8,2:8:288:2:68:-3.44741,0,-23.2571	0/1:44:19,25:19:684:25:900:-68.0739,0,-48.645	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	1/1:238:20,218:20:716:218:7774:-634.222,-6.87742,0	0/1:71:32,39:32:1152:39:1400:-104.926,0,-82.617	0/1:42:24,18:24:860:18:644:-45.6473,0,-65.0786	0/0:92:92,0:92:3312:0:0:0,-27.6948,-298.275	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253
chr06	32693868	.	C	T	35310.5	PASS	AB=0.535929;ABP=45.9206;AC=46;AF=0.244681;AN=188;AO=2060;CIGAR=1X;DP=7589;DPB=7589;DPRA=1.18696;EPP=4476.24;EPPR=11976.5;GTI=1;LEN=1;MEANALT=1.01923;MQM=59.949;MQMR=59.9973;NS=94;NUMALT=1;ODDS=0.132451;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73484;QR=196040;RO=5526;RPL=2058;RPP=4458.89;RPPR=11941.8;RPR=2;RUN=1;SAF=2058;SAP=4458.89;SAR=2;SRF=5518;SRP=11933.2;SRR=8;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:18,49:18:633:49:1752:-137.795,0,-37.1261	0/1:53:25,28:25:900:28:985:-73.0069,0,-65.3664	0/1:100:35,65:35:1232:65:2326:-179.409,0,-81.081	0/0:147:147,0:147:5219:0:0:0,-44.2514,-469.85	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.185	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:87:87,0:87:3106:0:0:0,-26.1896,-279.766	0/1:140:85,55:85:3036:55:1963:-134.8,0,-231.326	0/0:116:115,1:115:4074:1:36:0,-31.3212,-363.248	0/1:91:50,41:50:1758:41:1464:-104.662,0,-131.108	0/1:39:23,16:23:816:16:563:-39.259,0,-62.0215	0/0:84:84,0:84:2990:0:0:0,-25.2865,-269.332	0/0:71:70,0:70:2474:0:0:0,-21.0721,-222.552	0/1:61:26,35:26:928:35:1251:-94.5314,0,-65.4754	0/1:84:32,52:32:1144:52:1859:-142.303,0,-77.983	0/0:83:83,0:83:2930:0:0:0,-24.9855,-263.933	0/0:25:25,0:25:839:0:0:0,-7.52575,-75.8149	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	0/1:153:73,80:73:2564:80:2836:-209.42,0,-184.952	0/0:168:168,0:168:5989:0:0:0,-50.573,-539.117	0/0:104:104,0:104:3694:0:0:0,-31.3071,-332.664	0/1:105:39,66:39:1396:66:2355:-180.6,0,-94.3309	0/0:17:16,1:16:558:1:36:0,-1.51923,-46.9482	0/1:122:61,61:61:2156:61:2160:-157.938,0,-157.58	0/0:191:190,1:190:6716:1:36:0,-53.8985,-600.921	0/1:307:135,172:135:4775:172:6168:-462.801,0,-337.491	0/1:34:10,24:10:360:24:864:-67.8475,0,-22.5093	0/1:235:122,113:122:4350:113:4036:-292.685,0,-320.933	0/1:130:58,72:58:2080:72:2543:-189.985,0,-148.336	0/1:96:39,57:39:1377:57:2031:-154.161,0,-95.3278	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:170:68,102:68:2432:102:3641:-276.719,0,-167.961	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/1:56:30,26:30:1080:26:928:-66.9806,0,-80.6556	0/1:7:3,4:3:108:4:136:-10.4683,0,-7.96796	0/1:138:68,70:68:2427:70:2508:-184.43,0,-177.143	0/1:19:6,13:6:216:13:460:-36.0158,0,-14.0709	0/1:158:72,86:72:2542:86:3080:-229.834,0,-181.469	0/1:58:26,32:26:936:32:1152:-86.5304,0,-67.0997	0/0:48:48,0:48:1686:0:0:0,-14.4494,-152.025	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.765	0/1:129:68,61:68:2422:61:2162:-156.013,0,-179.402	0/0:142:141,1:141:5010:1:36:0,-39.148,-447.449	0/1:88:47,40:47:1622:40:1430:-102.574,0,-119.84	0/1:83:43,40:43:1525:40:1404:-101.669,0,-112.556	0/0:109:109,0:109:3894:0:0:0,-32.8123,-350.653	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/1:56:18,38:18:612:38:1368:-106.563,0,-38.5397	0/1:4:1,3:1:36:3:99:-8.03246,0,-2.39415	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.456	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:5:5,0:5:156:0:0:0,-1.50515,-14.347	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:77:45,32:45:1599:32:1152:-80.8108,0,-121.02	0/0:86:86,0:86:3056:0:0:0,-25.8886,-275.268	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:134:134,0:134:4734:0:0:0,-40.338,-426.222	0/0:116:116,0:116:4113:0:0:0,-34.9195,-370.354	0/1:70:38,32:38:1364:32:1138:-81.6537,0,-101.989	0/1:52:17,35:17:608:35:1256:-97.6917,0,-39.3985	0/0:127:127,0:127:4519:0:0:0,-38.2308,-406.877	0/0:190:186,4:186:6618:4:144:0,-43.8821,-582.387	0/0:33:32,1:32:1135:1:36:0,-6.33571,-98.8598	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:55:55,0:55:1935:0:0:0,-16.5566,-174.423	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:96:96,0:96:3373:0:0:0,-28.8989,-303.784	0/1:87:31,56:31:1099:56:1986:-152.823,0,-73.0298	0/0:194:194,0:194:6890:0:0:0,-58.3998,-620.169	0/1:80:49,31:49:1720:31:1116:-76.6693,0,-131	0/1:105:43,62:43:1526:62:2210:-167.555,0,-106.023	0/0:82:81,0:81:2894:0:0:0,-24.3834,-260.335	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:78:78,0:78:2772:0:0:0,-23.4803,-249.72	0/0:66:66,0:66:2343:0:0:0,-19.868,-211.129	0/0:160:160,0:160:5617:0:0:0,-48.1648,-505.658	0/1:61:27,34:27:955:34:1220:-91.7394,0,-67.902	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.744	0/1:42:22,20:22:769:20:716:-52.1245,0,-56.8853	0/1:141:69,72:69:2413:72:2565:-188.097,0,-174.979	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:87:46,41:46:1623:41:1468:-106.226,0,-120.166	0/0:71:71,0:71:2526:0:0:0,-21.3731,-227.591	0/1:26:20,6:20:707:6:207:-11.1401,0,-56.1278	0/1:65:31,34:31:1075:34:1211:-89.7294,0,-77.4876	0/1:87:24,63:24:836:63:2243:-175.944,0,-49.3651	0/0:106:106,0:106:3745:0:0:0,-31.9092,-337.253	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.033
chr06	32693934	.	G	A	56130.8	PASS	AB=0.517597;ABP=19.9759;AC=48;AF=0.255319;AN=188;AO=3278;CIGAR=1X;DP=12744;DPB=12744;DPRA=1.17787;EPP=7121.1;EPPR=20536.5;GTI=1;LEN=1;MEANALT=1.12069;MQM=59.8282;MQMR=59.9589;NS=94;NUMALT=1;ODDS=2.52421;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117366;QR=337676;RO=9456;RPL=3278;RPP=7121.1;RPPR=20536.5;RPR=0;RUN=1;SAF=0;SAP=7121.1;SAR=3278;SRF=0;SRP=20536.5;SRR=9456;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:29,26:29:1044:26:936:-68.0028,0,-77.7182	0/1:160:70,90:70:2484:90:3228:-242.387,0,-175.65	0/1:123:75,48:75:2672:48:1709:-117.067,0,-203.7	0/0:266:264,1:264:9421:1:36:0,-76.5345,-844.256	0/0:128:128,0:128:4560:0:0:0,-38.5318,-410.569	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.898	0/0:142:141,1:141:5052:1:36:0,-39.148,-451.198	0/1:285:163,122:163:5820:122:4341:-305.033,0,-438.121	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.524	0/1:153:81,72:81:2904:72:2592:-187.47,0,-215.535	0/1:83:46,37:46:1640:37:1332:-95.1969,0,-122.903	0/0:116:116,0:116:4140:0:0:0,-34.9195,-372.785	0/0:93:93,0:93:3312:0:0:0,-27.9958,-298.3	0/1:117:48,69:48:1692:69:2468:-187.084,0,-117.346	0/1:92:52,40:52:1848:40:1436:-101.843,0,-138.905	0/0:56:56,0:56:1988:0:0:0,-16.8577,-179.194	0/0:127:127,0:127:4536:0:0:0,-38.2308,-408.408	0/0:79:78,0:78:2788:0:0:0,-23.4803,-250.793	0/1:62:22,40:22:788:40:1432:-110.506,0,-52.5809	0/1:289:147,141:147:5232:141:5033:-365.998,0,-383.965	0/0:194:194,0:194:6940:0:0:0,-58.3998,-623.297	0/0:223:222,0:222:7924:0:0:0,-66.8287,-712.828	0/1:179:84,94:84:2989:94:3349:-247.683,0,-215.296	0/0:160:159,1:159:5672:1:36:0,-44.5665,-507.004	0/1:93:38,55:38:1360:55:1976:-150.119,0,-94.7048	0/0:400:400,0:400:14288:0:0:0,-120.412,-1285.63	0/1:259:128,131:128:4568:131:4696:-344.342,0,-333.316	0/1:47:26,21:26:924:21:756:-54.2188,0,-69.3292	0/1:368:166,201:166:5924:201:7193:-536.581,0,-422.433	0/1:194:64,130:64:2284:130:4656:-360.78,0,-147.422	0/1:150:77,73:77:2752:73:2620:-190.893,0,-202.768	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:294:149,145:149:5308:145:5180:-377.837,0,-389.355	0/0:225:224,1:224:8020:1:36:0,-64.1335,-718.187	0/1:87:39,48:39:1392:48:1728:-129.616,0,-99.3812	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:226:99,127:99:3537:127:4536:-340.28,0,-250.505	0/1:36:10,26:10:352:26:928:-73.0012,0,-21.1811	0/1:210:85,125:85:3016:125:4480:-339.754,0,-208.457	0/1:139:75,64:75:2692:64:2304:-165.691,0,-200.679	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/0:131:130,1:130:4660:1:36:0,-35.8367,-415.963	0/1:173:81,92:81:2904:92:3292:-244.421,0,-209.517	0/0:333:332,1:332:11864:1:36:0,-96.6447,-1062.95	0/1:160:80,80:80:2852:80:2872:-210.452,0,-208.754	0/1:239:112,126:112:3997:126:4512:-334.369,0,-288.06	0/0:162:162,0:162:5799:0:0:0,-48.7669,-522.023	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:145:145,0:145:5161:0:0:0,-43.6493,-464.632	0/1:92:50,42:50:1788:42:1512:-108.624,0,-133.508	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.728	0/0:61:60,1:60:2156:1:36:0,-14.7646,-190.709	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:131:74,56:74:2652:56:2016:-142.173,0,-199.432	0/0:133:133,0:133:4748:0:0:0,-40.037,-427.394	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/0:399:399,0:399:14228:0:0:0,-120.111,-1280.23	0/0:204:203,1:203:7248:1:36:0,-57.8118,-648.777	0/1:74:39,35:39:1404:35:1252:-90.7089,0,-104.383	0/1:175:92,83:92:3300:83:2956:-212.814,0,-243.683	0/0:280:277,2:277:9916:2:72:0,-77.5105,-885.544	0/0:73:72,1:72:2584:1:32:0,-18.7759,-229.609	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:92:92,0:92:3276:0:0:0,-27.6948,-295.061	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.725	0/1:36:13,23:13:456:23:824:-63.6462,0,-30.5362	0/0:92:92,0:92:3280:0:0:0,-27.6948,-295.421	0/1:63:21,42:21:748:42:1508:-117.026,0,-48.6804	0/0:188:188,0:188:6736:0:0:0,-56.5936,-606.314	0/1:255:138,117:138:4932:117:4196:-301.027,0,-367.269	0/1:212:106,106:106:3784:106:3796:-278.011,0,-276.941	0/0:212:212,0:212:7560:0:0:0,-63.8184,-680.444	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:162:161,1:161:5748:1:36:0,-45.1686,-513.063	0/0:162:162,0:162:5784:0:0:0,-48.7669,-520.676	0/0:235:234,0:234:8356:0:0:0,-70.441,-751.689	0/1:128:56,72:56:2000:72:2584:-194.266,0,-141.697	0/0:108:108,0:108:3856:0:0:0,-32.5112,-347.232	0/1:128:65,63:65:2320:63:2264:-165.44,0,-170.529	0/1:224:107,117:107:3816:117:4176:-308.579,0,-276.208	0/1:71:32,39:32:1148:39:1400:-104.926,0,-82.2563	0/1:119:53,66:53:1892:66:2372:-177.725,0,-134.736	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.211	0/1:55:28,27:28:992:27:972:-71.2413,0,-73.0377	0/1:115:58,57:58:2084:57:2040:-149.247,0,-153.212	0/1:110:38,72:38:1348:72:2549:-196.547,0,-88.507	0/0:148:148,0:148:5276:0:0:0,-44.5524,-474.972	0/0:147:147,0:147:5228:0:0:0,-44.2514,-470.662
chr06	32693990	.	T	C	294051	PASS	AB=0.424814;ABP=398.764;AC=139;AF=0.739362;AN=188;AO=11110;CIGAR=1X;DP=15785;DPB=15785;DPRA=38.1063;EPP=24128.1;EPPR=10130.8;GTI=3;LEN=1;MEANALT=1.05435;MQM=58.362;MQMR=59.7551;NS=94;NUMALT=1;ODDS=0.664365;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=393866;QR=165436;RO=4668;RPL=6296;RPP=432.286;RPPR=3.10148;RPR=4814;RUN=1;SAF=6296;SAP=432.286;SAR=4814;SRF=2340;SRP=3.07729;SRR=2328;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:44,39:44:1549:39:1383:-99.667,0,-114.669	0/1:195:107,88:107:3819:88:3136:-223.612,0,-285.16	0/1:273:155,118:155:5526:118:4182:-294.247,0,-415.155	1/1:342:0,342:0:0:342:12090:-1087.42,-102.952,0	1/1:108:0,108:0:0:108:3849:-346.426,-32.5112,0	1/1:78:0,78:0:0:78:2759:-248.407,-23.4803,0	1/1:175:0,175:0:0:175:6211:-558.191,-52.6803,0	0/1:295:172,123:172:6085:123:4333:-301.302,0,-458.847	1/1:123:2,121:2:72:121:4294:-379.6,-30.19,0	0/1:161:92,69:92:3253:69:2429:-170.229,0,-244.502	0/1:173:97,75:97:3411:75:2648:-186.253,0,-254.973	1/1:149:1,148:1:36:148:5193:-463.729,-41.2552,0	1/1:123:0,123:0:0:123:4351:-391.617,-37.0267,0	0/1:166:100,66:100:3513:66:2362:-162.845,0,-266.413	0/1:122:73,49:73:2574:49:1760:-121.776,0,-195.132	1/1:102:0,102:0:0:102:3600:-324.155,-30.7051,0	1/1:116:0,116:0:0:116:4111:-370.031,-34.9195,0	1/1:97:1,96:1:36:96:3417:-304.003,-25.6016,0	0/1:99:66,33:66:2348:33:1176:-75.9131,0,-181.778	0/1:475:301,174:301:10662:174:6177:-411.768,0,-816.469	1/1:293:0,293:0:0:293:10426:-937.912,-88.2018,0	1/1:202:0,202:0:0:202:7181:-644.498,-60.8081,0	0/1:124:63,61:63:2243:61:2133:-154.882,0,-164.77	1/1:142:0,142:0:0:142:5054:-454.628,-42.7463,0	0/1:130:74,56:74:2585:56:1972:-138.382,0,-193.722	1/1:524:3,521:3:104:521:18410:-1645.16,-148.037,0	0/1:379:214,165:214:7587:165:5845:-411.771,0,-568.786	0/1:70:41,29:41:1450:29:1036:-72.4636,0,-109.694	0/1:496:286,210:286:10076:210:7493:-524.688,0,-757.461	0/1:211:116,95:116:4099:95:3399:-242.426,0,-305.467	0/1:173:101,72:101:3600:72:2541:-176.684,0,-272.101	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	1/1:20:0,20:0:0:20:716:-64.7584,-6.0206,0	1/1:3:0,3:0:0:3:108:-10.0724,-0.90309,0	1/1:19:0,19:0:0:19:680:-61.4723,-5.71957,0	1/1:15:0,15:0:0:15:532:-48.2094,-4.51545,0	0/1:440:218,222:218:7740:222:7881:-575.959,0,-564.158	1/1:252:0,252:0:0:252:8922:-802.485,-75.8596,0	0/1:121:74,47:74:2622:47:1654:-112.598,0,-199.613	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:428:324,104:324:11475:104:3694:-203.523,0,-903.652	0/1:84:42,42:42:1472:42:1486:-108.616,0,-107.457	0/1:213:121,92:121:4320:92:3234:-227.069,0,-324.83	0/1:142:81,61:81:2887:61:2174:-153.142,0,-217.303	1/1:132:0,130:0:0:130:4596:-413.29,-39.1339,0	1/1:152:0,152:0:0:152:5365:-482.594,-45.7566,0	0/1:174:98,76:98:3461:76:2716:-191.409,0,-258.955	1/1:284:2,282:2:72:282:9964:-889.374,-78.6558,0	0/1:202:104,98:104:3700:98:3463:-249.555,0,-272.396	0/1:241:135,106:135:4798:106:3789:-268.548,0,-359.353	1/1:277:0,277:0:0:277:9835:-884.235,-83.3853,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:251:0,251:0:0:251:8963:-805.742,-75.5585,0	0/1:92:40,52:40:1412:52:1819:-136.243,0,-99.6716	0/1:26:17,9:17:612:9:324:-21.6717,0,-47.5867	1/1:225:0,224:0:0:224:7872:-707.804,-67.4307,0	1/1:50:0,50:0:0:50:1777:-160.163,-15.0515,0	1/1:11:0,11:0:0:11:392:-35.4968,-3.31133,0	1/1:39:0,39:0:0:39:1372:-123.731,-11.7402,0	0/1:124:67,57:67:2348:57:2035:-146.074,0,-174.239	1/1:220:0,220:0:0:220:7786:-700.486,-66.2266,0	0/1:6:4,2:4:136:2:72:-5.02561,0,-10.7694	1/1:324:0,324:0:0:324:11519:-1036.15,-97.5337,0	1/1:320:3,317:3:108:317:11294:-1005.92,-86.2544,0	0/1:161:78,83:78:2764:83:2972:-218.207,0,-200.506	0/1:152:86,66:86:3065:66:2325:-163.698,0,-229.677	1/1:270:5,265:5:180:265:9405:-828.563,-64.726,0	1/1:233:4,228:4:144:228:8111:-716.292,-56.885,0	1/1:66:1,65:1:36:65:2311:-204.136,-16.2697,0	1/1:143:1,142:1:27:142:5033:-449.886,-40.3475,0	1/1:192:0,192:0:0:192:6814:-612.586,-57.7978,0	0/1:27:14,13:14:483:13:440:-31.779,0,-35.6695	1/1:110:1,107:1:36:107:3799:-338.473,-29.2728,0	0/1:129:69,60:69:2434:60:2147:-154.649,0,-179.766	1/1:217:0,217:0:0:217:7675:-690.024,-65.3235,0	0/1:265:143,122:143:5101:122:4326:-309.65,0,-379.361	0/1:169:100,69:100:3559:69:2437:-168.687,0,-269.564	1/1:105:0,105:0:0:105:3727:-334.83,-31.6082,0	1/1:16:0,16:0:0:16:552:-49.9552,-4.81648,0	1/1:136:0,136:0:0:136:4816:-433.513,-40.9401,0	1/1:172:0,172:0:0:172:6102:-549.132,-51.7772,0	1/1:312:0,312:0:0:312:11069:-995.566,-93.9214,0	0/1:190:112,78:112:3967:78:2787:-193.668,0,-299.816	1/1:104:0,104:0:0:104:3666:-329.933,-31.3071,0	0/1:157:87,70:87:3099:70:2478:-175.955,0,-231.876	0/1:271:134,137:134:4766:137:4819:-352.165,0,-347.216	0/1:64:34,30:34:1220:30:1067:-76.9541,0,-90.7286	0/1:127:73,54:73:2608:54:1910:-133.932,0,-195.937	1/1:120:0,120:0:0:120:4234:-380.887,-36.1236,0	0/1:103:55,48:55:1955:48:1711:-123.237,0,-145.219	0/1:192:130,62:130:4592:62:2195:-139.877,0,-355.566	0/1:129:88,41:88:3113:41:1464:-93.0873,0,-241.512	1/1:166:0,166:0:0:166:5876:-528.564,-49.971,0	1/1:186:0,186:0:0:186:6577:-591.851,-55.9916,0
chr06	32766454	.	GACTG	GTCTT,GACTT	94346.5	PASS	AB=0.641458,0.353125;ABP=837.292,902.407;AC=96,84;AF=0.533333,0.466667;AN=180;AO=3276,1713;CIGAR=1M1X2M1X,4M1X;DP=5015;DPB=5016.2;DPRA=28.1629,11.2584;EPP=7116.75,3722.74;EPPR=7.35324;GTI=10;LEN=5,1;MEANALT=2.22472,2.22472;MQM=48.054,58.0817;MQMR=29.5;NS=90;NUMALT=2;ODDS=5192.42;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=58.6667,58.6667;PQR=0;PRO=0;QA=113650,60879;QR=68;RO=2;RPL=0,0;RPP=7116.75,3722.74;RPPR=7.35324;RPR=3276,1713;RUN=1,1;SAF=0,0;SAP=7116.75,3722.74;SAR=3276,1713;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,16,1:0:0:16,1:565,36:-50.6321,-4.81648,0,-47.6942,-1.51924,-47.3932	1/2:38:0,33,5:0:0:33,5:1151,180:-108.268,-15.0469,-5.11292,-93.5797,0,-92.0746	1/2:37:0,31,6:0:0:31,6:1060,208:-102.869,-17.2529,-7.92097,-85.9618,0,-84.1557	1/2:138:0,88,50:0:0:88,50:3059,1767:-386.188,-139.572,-113.081,-246.959,0,-231.908	1/2:16:0,9,7:0:0:9,7:302,243:-31.7601,-8.1832,-5.47393,-23.8088,0,-21.7016	1/2:4:0,1,3:0:0:1,3:36,104:-7.36838,-4.41143,-4.1104,-3.2724,0,-2.36931	1/2:30:0,17,13:0:0:17,13:590,464:-85.7261,-38.1841,-33.0666,-47.8934,0,-43.98	1/2:65:1,57,7:1:32:57,7:2000,252:-178.523,-18.1682,-3.45079,-158.261,0,-158.601	1/2:17:0,11,6:0:0:11,6:378,216:-48.0568,-17.976,-14.6647,-30.4326,0,-28.6264	1/2:88:0,67,21:0:0:67,21:2284,748:-245.684,-61.3227,-41.1537,-184.714,0,-178.392	1/2:44:0,33,11:0:0:33,11:1131,383:-122.741,-31.4919,-21.5579,-91.5948,0,-88.2835	1/2:85:0,43,42:0:0:43,42:1472,1485:-239.432,-121.269,-108.325,-118.509,0,-105.866	1/2:103:0,48,55:0:0:48,55:1627,1951:-290.33,-159.3,-144.851,-131.375,0,-114.818	1/2:64:0,47,16:0:0:47,16:1611,568:-173.835,-46.3713,-32.2229,-127.557,0,-122.741	1/2:61:0,36,25:0:0:36,25:1267,888:-175.031,-72.6602,-61.8232,-102.674,0,-95.1479	1/2:61:0,32,29:0:0:32,29:1131,1036:-175.802,-84.8194,-75.1865,-91.3362,0,-82.6063	1/2:63:0,31,32:0:0:31,32:1089,1133:-178.631,-91.3493,-82.0174,-87.629,0,-77.9961	1/2:42:0,19,23:0:0:19,23:652,819:-119.644,-67.0833,-61.3638,-52.9084,0,-45.9847	1/2:22:0,15,6:0:0:15,6:535,216:-61.152,-17.7458,-13.2304,-43.5238,0,-41.7177	1/2:64:0,45,18:0:0:45,18:1582,640:-178.152,-50.0444,-36.4981,-128.337,0,-122.919	1/2:58:0,35,23:0:0:35,23:1198,824:-164.088,-67.5596,-57.0236,-96.8791,0,-89.9554	1/2:29:0,16,13:0:0:16,13:568,464:-69.6558,-24.0282,-19.2117,-45.9151,0,-42.0017	1/2:39:0,33,6:0:0:33,6:1150,216:-110.76,-17.9843,-8.05034,-93.1331,0,-91.327	1/2:20:0,9,11:0:0:9,11:323,396:-58.7628,-32.6668,-29.9575,-26.4535,0,-23.1422	1/2:35:0,20,15:0:0:20,15:702,536:-100.43,-44.0594,-38.0388,-56.7236,0,-52.2082	1/2:95:0,46,49:0:0:46,49:1601,1744:-261.044,-133.055,-119.208,-128.328,0,-113.577	1/2:103:0,82,21:0:0:82,21:2857,744:-289.468,-58.611,-33.9265,-231.2,0,-224.878	1/2:44:0,31,12:0:0:31,12:1093,424:-122.775,-34.5413,-25.2094,-88.2453,0,-84.6329	1/2:72:0,64,8:0:0:64,8:2214,288:-202.451,-23.8592,-4.59325,-178.95,0,-176.542	1/2:54:0,49,5:0:0:49,5:1678,180:-150.589,-15.0469,-0.296445,-135.901,0,-134.395	1/2:59:0,51,7:0:0:51,7:1759,239:-161.659,-19.4284,-4.07582,-142.267,0,-140.16	1/2:9:0,8,1:0:0:8,1:278,36:-25.708,-3.29724,-0.889005,-22.7689,0,-22.4679	1/2:7:0,5,2:0:0:5,2:178,72:-20.6072,-6.23466,-4.72951,-14.7304,0,-14.1283	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/2:6:0,4,2:0:0:4,2:138,72:-17.3613,-6.23466,-5.03054,-11.4808,0,-10.8788	1/2:202:0,132,67:0:0:132,67:4627,2369:-566.49,-192.958,-153.222,-373.545,0,-353.376	1/2:28:0,8,19:0:0:8,19:279,676:-74.265,-52.7226,-50.3144,-21.5211,0,-15.8015	1/2:43:0,33,10:0:0:33,10:1135,360:-121.394,-29.6865,-19.7525,-92.0163,0,-89.006	.:.:.:.:.:.:.:.	1/1:47:0,45,2:0:0:45,2:1545,72:-138.448,-13.5464,0,-132.573,-7.31169,-131.971	1/2:26:1,19,6:1:36:19,6:662,216:-69.2426,-16.0018,-12.0134,-51.9206,0,-51.8584	1/2:21:0,19,2:0:0:19,2:634,72:-57.2896,-6.22982,-0.510245,-51.4167,0,-50.8147	1/2:54:0,42,11:0:0:42,11:1466,370:-148.506,-30.0895,-17.4463,-118.535,0,-115.223	1/2:80:0,35,45:0:0:35,45:1225,1607:-230.005,-131.371,-120.835,-98.985,0,-85.4387	1/2:23:0,16,7:0:0:16,7:539,252:-61.8145,-18.5453,-13.7288,-43.5954,0,-41.4881	1/1:50:0,45,5:0:0:45,5:1574,180:-141.07,-13.5464,0,-133.415,-5.67338,-131.91	1/2:47:0,27,20:0:0:27,20:952,712:-121.163,-44.2721,-36.1443,-77.1997,0,-71.1791	1/2:45:0,35,10:0:0:35,10:1214,343:-126.239,-28.1903,-17.6542,-98.392,0,-95.3817	1/2:83:0,61,22:0:0:61,22:2096,780:-227.697,-59.094,-40.7311,-168.836,0,-162.213	1/2:29:0,15,14:0:0:15,14:538,504:-84.5912,-41.4809,-36.9655,-43.4667,0,-39.2523	1/1:5:0,5,0:0:0:5,0:175,0:-16.0046,-1.50515,0,-16.0046,-1.50515,-16.0046	1/2:25:0,12,13:0:0:12,13:419,468:-65.2945,-31.4683,-27.8559,-34.1503,0,-30.2369	1/2:29:0,26,3:0:0:26,3:892,108:-80.9035,-9.17208,-1.3453,-72.0892,0,-71.1862	2/2:2:0,0,2:0:0:0,2:0,68:-6.45771,-6.45771,-6.45771,-0.60206,-0.60206,0	1/2:54:0,34,20:0:0:34,20:1143,704:-149.331,-57.6584,-47.4234,-92.0172,0,-85.9966	1/2:9:0,4,5:0:0:4,5:136,176:-23.3041,-12.6542,-11.4501,-10.9695,0,-9.46432	1/2:4:0,2,2:0:0:2,2:72,72:-12.0361,-6.23466,-5.6326,-6.15931,0,-5.55725	1/2:8:0,2,6:0:0:2,6:66,216:-23.2672,-17.9843,-17.3823,-5.6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chr06	32766467	.	C	T	24819.6	PASS	AB=0.356016;ABP=881.58;AC=84;AF=0.466667;AN=180;AO=1760;CIGAR=1X;DP=5111;DPB=5111;DPRA=11.4742;EPP=3452.18;EPPR=6910.91;GTI=14;LEN=1;MEANALT=1;MQM=57.8881;MQMR=48.3826;NS=90;NUMALT=1;ODDS=0.118228;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62640;QR=117477;RO=3351;RPL=44;RPP=3452.18;RPPR=6910.91;RPR=1716;RUN=1;SAF=0;SAP=3824.8;SAR=1760;SRF=0;SRP=7279.61;SRR=3351;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:16,1:16:568:1:36:0,-1.51923,-47.6798	0/1:43:38,5:38:1344:5:180:-3.60778,0,-107.873	0/1:37:31,6:31:1061:6:216:-8.6524,0,-84.2469	0/1:138:88,50:88:3086:50:1792:-115.331,0,-234.262	0/1:17:9,8:9:320:8:288:-9.0939,0,-22.6656	0/1:4:1,3:1:36:3:108:-4.11218,0,-2.36931	0/1:30:17,13:17:608:13:468:-33.4287,0,-45.5239	0/1:71:62,9:62:2180:9:299:-5.84817,0,-172.472	0/1:20:14,6:14:496:6:216:-13.7616,0,-38.3063	0/1:85:65,20:65:2283:20:720:-39.5389,0,-179.04	0/1:44:34,10:34:1186:10:347:-18.3183,0,-93.1491	0/1:91:46,45:46:1581:45:1604:-117.235,0,-114.245	0/1:110:54,56:54:1844:56:1982:-145.539,0,-131.933	0/1:62:46,16:46:1636:16:572:-33.1414,0,-125.239	0/1:65:40,25:40:1412:25:896:-61.3911,0,-106.979	0/1:64:33,31:33:1115:31:1112:-81.1162,0,-80.4242	0/1:64:33,31:33:1139:31:1112:-79.8309,0,-82.082	0/1:42:19,23:19:671:23:798:-59.4758,0,-47.7329	0/1:26:17,9:17:585:9:324:-19.1004,0,-44.9406	0/1:66:46,20:46:1626:20:720:-40.5561,0,-126.046	0/1:55:32,23:32:1121:23:828:-58.2875,0,-83.8829	0/1:30:17,13:17:608:13:464:-19.2715,0,-45.2093	0/1:38:32,6:32:1144:6:216:-8.35137,0,-91.0746	0/1:20:9,11:9:315:11:387:-29.1407,0,-22.4336	0/1:33:19,14:19:684:14:500:-35.4022,0,-51.1745	0/1:96:46,50:46:1644:50:1770:-121.296,0,-116.807	0/1:104:83,21:83:2948:21:744:-33.6255,0,-232.564	0/1:46:31,15:31:1080:15:526:-33.8169,0,-82.887	0/1:73:65,8:65:2324:8:288:-4.29222,0,-185.745	0/1:54:48,6:48:1711:6:207:-2.69596,0,-137.191	0/1:59:51,8:51:1804:8:288:-8.50427,0,-144.113	0/1:9:8,1:8:288:1:32:-0.490043,0,-23.3405	0/1:8:6,2:6:212:2:72:-4.42848,0,-16.8667	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.1145	0/1:204:135,69:135:4746:69:2460:-160.229,0,-362.716	0/1:28:8,20:8:284:20:716:-53.9727,0,-15.8021	0/1:44:33,11:33:1153:11:396:-22.7374,0,-90.333	.:.:.:.:.:.:.:.	0/0:47:45,2:45:1604:2:72:0,-7.31169,-137.182	0/1:27:20,7:20:699:7:252:-13.6902,0,-54.8127	0/1:19:17,2:17:600:2:72:-1.11231,0,-48.3989	0/1:54:42,12:42:1487:12:417:-20.2208,0,-116.983	0/1:83:38,45:38:1324:45:1604:-119.662,0,-93.3709	0/1:23:16,7:16:572:7:252:-13.7288,0,-44.3508	0/0:50:45,5:45:1593:5:180:0,-5.67338,-133.615	0/1:48:28,20:28:986:20:712:-35.8433,0,-73.9183	0/1:43:32,11:32:1125:11:392:-22.3016,0,-87.9897	0/1:82:61,21:61:2166:21:738:-37.3515,0,-168.856	0/1:29:15,14:15:540:14:504:-36.9655,0,-39.4202	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3008	0/1:25:12,13:12:428:13:468:-27.8559,0,-31.0281	0/1:27:24,3:24:833:3:108:-1.94736,0,-66.5029	1/1:2:0,2:0:0:2:64:-6.07869,-0.60206,0	0/1:55:36,19:36:1261:19:669:-43.9769,0,-96.1684	0/1:9:4,5:4:140:5:180:-11.4515,0,-9.79955	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.55725	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.0521	0/1:39:35,4:35:1243:4:136:-0.835368,0,-99.7812	0/1:111:52,59:52:1816:59:2107:-156.471,0,-128.794	.:.:.:.:.:.:.:.	0/1:227:134,93:134:4701:93:3323:-230.952,0,-349.696	0/1:48:25,23:25:880:23:828:-60.3854,0,-64.3949	0/1:62:44,18:44:1544:18:640:-36.9117,0,-119.208	0/0:51:44,7:44:1541:7:233:0,-1.1877,-122.807	0/1:52:38,14:38:1314:14:504:-27.6866,0,-101.597	0/1:69:37,32:37:1316:32:1127:-78.6098,0,-96.0592	0/1:52:27,25:27:932:25:881:-63.9482,0,-67.8383	0/1:29:17,12:17:576:12:428:-30.1069,0,-43.1094	0/1:39:19,20:19:659:20:720:-53.3795,0,-47.1382	0/0:29:27,2:27:955:2:68:0,-2.27216,-79.4329	0/1:17:8,9:8:280:9:324:-24.3514,0,-20.2674	0/1:74:47,27:47:1662:27:960:-64.3942,0,-126.859	0/1:31:18,13:18:609:13:464:-32.7656,0,-45.3838	0/1:125:84,41:84:2922:41:1463:-91.9815,0,-224.21	0/0:31:27,4:27:968:4:144:0,-3.23125,-80.3887	0/1:144:92,52:92:3249:52:1836:-122.164,0,-247.554	0/1:10:6,4:6:207:4:140:-9.93428,0,-15.8421	0/1:51:24,27:24:843:27:953:-70.7313,0,-59.7657	0/1:38:20,18:20:701:18:644:-39.4354,0,-51.6108	0/1:67:47,20:47:1628:20:699:-43.0592,0,-125.111	0/1:75:52,23:52:1844:23:824:-51.9037,0,-142.591	0/1:87:44,43:44:1547:43:1540:-112.703,0,-112.105	0/1:76:60,16:60:2068:16:576:-29.2944,0,-162.612	0/1:148:109,39:109:3761:39:1387:-78.2274,0,-292.495	0/1:36:30,6:30:1005:6:216:-6.57078,0,-79.1988	0/1:73:58,15:58:1987:15:540:-26.9613,0,-156.26	0/1:79:39,40:39:1364:40:1430:-105.203,0,-98.4832	0/1:39:28,11:28:960:11:385:-21.781,0,-74.5381	0/1:73:50,23:50:1715:23:812:-51.4165,0,-131.767	0/1:68:55,13:55:1917:13:443:-18.6931,0,-151.472	0/1:154:89,65:89:3120:65:2328:-163.404,0,-232.32	0/1:162:85,77:85:2987:77:2737:-193.086,0,-216.578
chr06	32766479	.	G	A	30197.7	PASS	AB=0.397382;ABP=457.144;AC=84;AF=0.466667;AN=180;AO=1987;CIGAR=1X;DP=5204;DPB=5204;DPRA=29.2247;EPP=4010.7;EPPR=6395.66;GTI=10;LEN=1;MEANALT=1.02247;MQM=47.0483;MQMR=54.4228;NS=90;NUMALT=1;ODDS=0.160368;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70725;QR=114222;RO=3214;RPL=36;RPP=4010.7;RPPR=6395.66;RPR=1951;RUN=1;SAF=0;SAP=4317.73;SAR=1987;SRF=0;SRP=6982.12;SRR=3214;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:13,5:13:459:5:171:-10.2354,0,-36.1254	0/1:43:33,10:33:1179:10:360:-19.5919,0,-93.1972	0/1:38:20,18:20:716:18:648:-46.8375,0,-53.1583	0/1:137:53,84:53:1888:84:3011:-227.689,0,-124.269	0/1:16:7,9:7:244:9:324:-23.2084,0,-6.13018	0/1:4:3,1:3:108:1:36:-2.36931,0,-4.11218	0/1:31:14,17:14:504:17:602:-44.7266,0,-36.3662	0/1:74:65,9:65:2305:9:311:-5.87054,0,-182.866	0/1:20:6,14:6:212:14:491:-37.9446,0,-13.3959	0/1:88:70,18:70:2489:18:640:-30.9735,0,-197.019	0/1:45:34,11:34:1205:11:388:-21.4233,0,-94.7791	0/1:93:44,49:44:1544:49:1738:-127.247,0,-111.228	0/1:106:56,50:56:1986:50:1763:-126.003,0,-147.096	0/1:64:52,12:52:1841:12:432:-19.6017,0,-143.373	0/1:66:53,13:53:1891:13:464:-21.6756,0,-148.798	0/1:64:31,33:31:1112:33:1152:-83.6068,0,-81.119	0/1:66:32,34:32:1135:34:1216:-88.3552,0,-81.2957	0/1:43:23,20:23:815:20:720:-51.7029,0,-60.7019	0/1:26:20,6:20:707:6:216:-11.8271,0,-54.7467	0/1:68:53,15:53:1887:15:540:-28.091,0,-144.917	0/1:57:23,34:23:828:34:1216:-91.7164,0,-57.6854	0/1:30:13,17:13:468:17:612:-45.5679,0,-19.2728	0/1:39:33,6:33:1172:6:216:-7.67502,0,-93.6394	0/1:20:11,9:11:387:9:324:-23.2273,0,-29.1407	0/0:35:33,2:33:1175:2:66:0,-4.53243,-99.585	0/1:95:49,46:49:1747:46:1635:-115.644,0,-119.48	0/1:109:91,18:91:3263:18:642:-24.7955,0,-255.38	0/1:46:32,14:32:1119:14:500:-31.0459,0,-86.7862	0/1:74:54,20:54:1905:20:720:-42.2139,0,-148.421	0/1:53:41,12:41:1472:12:428:-22.4823,0,-116.206	0/0:62:59,3:59:2120:3:108:0,-8.67678,-180.31	0/1:9:1,8:1:36:8:279:-22.5456,0,-0.889005	0/1:8:2,6:2:72:6:216:-17.2241,0,-4.42848	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/1:7:3,4:3:104:4:144:-11.1145,0,-7.5956	0/1:204:145,59:145:5136:59:2103:-126.049,0,-399.661	0/1:26:18,8:18:644:8:288:-16.7512,0,-48.1054	0/1:45:37,8:37:1313:8:288:-12.4273,0,-104.662	.:.:.:.:.:.:.:.	0/0:45:42,3:42:1489:3:108:0,-3.55927,-123.784	0/1:27:22,5:22:783:5:180:-8.27953,0,-61.2842	0/1:22:19,3:19:684:3:92:-1.64551,0,-55.0425	0/1:55:39,16:39:1378:16:576:-35.0323,0,-106.019	0/1:79:43,36:43:1531:36:1288:-91.2674,0,-114.299	0/1:23:7,16:7:252:16:568:-44.0104,0,-13.7288	0/0:50:46,4:46:1639:4:144:0,-1.99676,-127.272	0/1:47:21,26:21:748:26:928:-69.0496,0,-39.3729	0/0:45:43,2:43:1529:2:72:0,-6.97904,-130.275	0/1:86:73,13:73:2594:13:449:-14.1857,0,-202.493	0/1:29:14,15:14:495:15:531:-38.6303,0,-36.1512	0/1:4:2,2:2:72:2:72:-5.57282,0,-5.60367	0/1:25:13,12:13:453:12:428:-31.0281,0,-27.8296	0/1:30:19,11:19:676:11:396:-26.6227,0,-51.6632	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:56:20,36:20:703:36:1284:-97.671,0,-46.7303	0/1:9:5,4:5:180:4:144:-10.1513,0,-11.4515	0/1:4:2,2:2:72:2:72:-5.55725,0,-5.6326	0/1:9:7,2:7:252:2:72:-4.0521,0,-20.3197	0/1:38:32,6:32:1148:6:216:-8.17833,0,-91.6756	0/1:113:59,54:59:2053:54:1927:-137.95,0,-151.018	.:.:.:.:.:.:.:.	0/1:231:95,136:95:3404:136:4848:-361.54,0,-237.035	0/1:49:24,25:24:852:25:896:-65.4596,0,-62.2406	0/1:66:48,18:48:1720:18:644:-37.3259,0,-132.477	0/1:53:46,7:46:1635:7:252:-6.63423,0,-122.455	0/1:50:14,35:14:504:35:1256:-97.2049,0,-28.371	0/1:69:33,36:33:1172:36:1286:-93.3699,0,-82.6468	0/1:53:26,27:26:914:27:972:-71.0547,0,-65.4183	0/1:32:13,19:13:464:19:676:-51.1525,0,-32.4425	0/1:40:21,19:21:739:19:676:-48.3306,0,-54.7821	0/1:30:26,4:26:928:4:135:-3.30551,0,-74.4982	0/1:18:9,9:9:324:9:315:-23.0847,0,-24.0504	0/1:75:47,28:47:1647:28:996:-66.8198,0,-125.645	0/1:31:12,19:12:428:19:660:-49.6276,0,-29.5269	0/1:125:96,29:96:3426:29:1036:-55.1406,0,-267.806	0/1:33:29,4:29:1040:4:144:-2.94392,0,-75.6641	0/1:147:54,93:54:1932:93:3317:-252.001,0,-129.879	0/1:10:4,6:4:144:6:216:-16.6617,0,-10.3033	0/1:53:30,23:30:1080:23:818:-57.1855,0,-81.5403	0/1:37:18,19:18:644:19:665:-48.6947,0,-39.7576	0/1:71:23,48:23:820:48:1711:-131.261,0,-52.7438	0/1:83:69,14:69:2439:14:500:-19.9017,0,-194.008	0/1:89:43,46:43:1514:46:1643:-120.162,0,-109.757	0/1:76:65,11:65:2327:11:396:-12.7619,0,-186.042	0/1:154:105,49:105:3729:49:1730:-107.755,0,-286.3	0/1:37:32,5:32:1128:5:180:-5.31169,0,-87.6447	0/1:76:54,20:54:1897:20:720:-41.6701,0,-148.013	0/1:79:42,37:42:1494:37:1314:-94.0184,0,-110.955	0/1:44:28,16:28:996:16:572:-36.6679,0,-76.4892	0/1:75:49,26:49:1723:26:919:-59.7071,0,-132.462	0/1:71:59,12:59:2080:12:432:-17.4698,0,-164.15	0/1:155:65,90:65:2328:90:3172:-235.685,0,-163.103	0/1:165:78,87:78:2763:87:3073:-222.784,0,-194.522
chr06	32859549	.	G	A	27647.1	PASS	AB=0.47029;ABP=31.7833;AC=47;AF=0.25;AN=188;AO=1779;CIGAR=1X;DP=7815;DPB=7815;DPRA=1.08081;EPP=3866.06;EPPR=13107.8;GTI=0;LEN=1;MEANALT=1.01818;MQM=59.8673;MQMR=59.9619;NS=94;NUMALT=1;ODDS=2.37247;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62157;QR=215905;RO=6035;RPL=0;RPP=3866.06;RPPR=13107.8;RPR=1779;RUN=1;SAF=1779;SAP=3866.06;SAR=0;SRF=6035;SRP=13107.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	0/1:135:68,67:68:2412:67:2283:-165.083,0,-176.696	0/1:147:90,57:90:3240:57:2028:-138.539,0,-247.569	0/0:176:175,1:175:6257:1:36:0,-49.383,-559.625	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.224	0/1:75:56,19:56:1989:19:669:-37.9567,0,-156.705	0/0:55:52,3:52:1864:3:108:0,-6.48148,-157.964	0/1:73:37,36:37:1305:36:1280:-93.4831,0,-95.7742	0/1:60:29,31:29:1029:31:1097:-80.9762,0,-74.8593	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/1:79:32,47:32:1144:47:1658:-125.704,0,-79.4881	0/1:78:34,44:34:1224:44:1515:-113.143,0,-86.9867	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.002	0/1:49:24,25:24:864:25:880:-64.7672,0,-63.3321	0/1:135:76,59:76:2724:59:2085:-147.277,0,-204.764	0/0:129:129,0:129:4589:0:0:0,-38.8329,-413.176	0/0:107:107,0:107:3810:0:0:0,-32.2102,-343.095	0/1:43:29,14:29:1044:14:470:-29.6735,0,-81.3301	0/0:87:87,0:87:3124:0:0:0,-26.1896,-280.958	0/1:49:14,35:14:500:35:1218:-95.1688,0,-30.5857	0/0:280:278,2:278:9907:2:72:0,-77.4517,-884.57	0/1:159:89,70:89:3200:70:2427:-170.82,0,-240.358	0/1:44:21,23:21:756:23:738:-53.4678,0,-55.1219	0/1:178:70,108:70:2508:108:3763:-285.202,0,-172.389	0/1:149:75,74:75:2684:74:2504:-180.751,0,-196.952	0/1:107:62,45:62:2205:45:1563:-108.744,0,-166.503	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:13:13,0:13:434:0:0:0,-3.91339,-39.3775	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:178:93,85:93:3344:85:3025:-218.834,0,-247.593	0/0:139:139,0:139:4984:0:0:0,-41.8432,-448.707	0/1:90:55,35:55:1976:35:1244:-85.172,0,-151.022	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:109:63,46:63:2268:46:1602:-111.653,0,-171.57	0/1:90:50,40:50:1788:40:1398:-99.0194,0,-132.746	0/1:68:40,28:40:1436:28:974:-67.4981,0,-109.067	0/1:78:42,36:42:1504:36:1273:-91.3902,0,-112.174	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/1:93:52,41:52:1864:41:1403:-98.5637,0,-140.044	0/0:132:132,0:132:4725:0:0:0,-39.736,-425.407	0/1:86:49,37:49:1760:37:1242:-86.1744,0,-132.785	0/1:135:84,51:84:2975:51:1805:-122.09,0,-227.334	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.641	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/1:31:19,12:19:676:12:432:-29.8884,0,-51.8361	0/1:14:9,5:9:301:5:180:-12.3376,0,-23.1993	0/0:73:68,4:68:2429:4:140:0,-9.08741,-205.917	0/0:50:49,1:49:1748:1:36:0,-11.4532,-154.006	0/0:7:6,1:6:216:1:21:0,-0.00726414,-17.6906	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.883	0/1:92:57,35:57:2040:35:1211:-81.5922,0,-156.177	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.964	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:157:157,0:157:5601:0:0:0,-47.2617,-504.212	0/0:175:174,1:174:6248:1:32:0,-49.4809,-559.213	0/1:56:30,26:30:1080:26:921:-66.2464,0,-80.6556	0/1:78:35,43:35:1256:43:1493:-111.176,0,-89.8649	0/0:133:133,0:133:4734:0:0:0,-40.037,-426.218	0/0:68:68,0:68:2417:0:0:0,-20.47,-217.67	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:10:6,4:6:201:4:140:-9.93428,0,-15.4067	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/1:62:39,23:39:1396:23:813:-54.8191,0,-107.275	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.531	0/1:109:53,56:53:1904:56:1895:-138.002,0,-138.825	0/1:113:58,55:58:2054:55:1926:-139.597,0,-151.111	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.692	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:143:143,0:143:5120:0:0:0,-43.0473,-460.942	0/0:143:143,0:143:5106:0:0:0,-43.0473,-459.681	0/0:150:149,1:149:5322:1:36:0,-41.5562,-475.511	0/1:79:42,37:42:1504:37:1314:-94.7796,0,-111.828	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:99:55,44:55:1972:44:1576:-112.322,0,-147.953	0/1:127:59,68:59:2112:68:2421:-179.912,0,-152.118	0/1:28:19,9:19:680:9:294:-18.3467,0,-53.1003	0/1:63:32,31:32:1152:31:1093:-79.7128,0,-85.0253	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/1:72:34,38:34:1206:38:1349:-100.031,0,-87.1703	0/1:107:57,50:57:2033:50:1758:-126.289,0,-151.03	0/1:80:30,50:30:1076:50:1788:-137.12,0,-73.0705	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:91:91,0:91:3257:0:0:0,-27.3937,-293.348
chr06	33137738	.	A	G	224733	PASS	AB=0.500364;ABP=3.01662;AC=136;AF=0.723404;AN=188;AO=8117;CIGAR=1X;DP=10904;DPB=10904;DPRA=28.4627;EPP=12094.6;EPPR=4726.55;GTI=1;LEN=1;MEANALT=1.04444;MQM=59.5783;MQMR=59.665;NS=94;NUMALT=1;ODDS=0.208002;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=285705;QR=98770;RO=2782;RPL=3723;RPP=123.459;RPPR=38.0911;RPR=4394;RUN=1;SAF=4418;SAP=141.309;SAR=3699;SRF=1446;SRP=12.4549;SRR=1336;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:23,16:23:804:16:560:-38.9886,0,-60.9256	0/1:147:73,74:73:2587:74:2619:-191.68,0,-188.818	0/1:141:79,62:79:2769:62:2193:-155.185,0,-206.997	1/1:167:0,167:0:0:167:5870:-527.763,-50.272,0	1/1:47:2,45:2:72:45:1588:-136.309,-7.31169,0	1/1:66:0,66:0:0:66:2301:-207.29,-19.868,0	1/1:164:0,164:0:0:164:5817:-522.345,-49.3689,0	0/1:242:124,118:124:4415:118:4154:-301.16,0,-324.581	1/1:119:0,119:0:0:119:4185:-376.791,-35.8226,0	0/1:102:53,49:53:1904:49:1723:-124.364,0,-140.918	0/1:102:47,55:47:1672:55:1921:-142.404,0,-120.051	1/1:187:0,187:0:0:187:6468:-582.141,-56.2926,0	1/1:139:0,139:0:0:139:4917:-442.611,-41.8432,0	0/1:147:78,69:78:2782:69:2434:-174.925,0,-206.326	0/1:151:77,74:77:2744:74:2617:-190.222,0,-201.179	1/1:112:0,112:0:0:112:3902:-351.312,-33.7154,0	1/1:142:0,142:0:0:142:4983:-447.252,-42.7463,0	1/1:131:0,131:0:0:131:4546:-409.276,-39.4349,0	0/1:69:41,28:41:1451:28:985:-68.182,0,-110.09	0/1:166:73,92:73:2593:92:3257:-243.317,0,-183.588	1/1:192:0,192:0:0:192:6765:-608.831,-57.7978,0	1/1:48:0,48:0:0:48:1688:-152.176,-14.4494,0	0/1:87:30,57:30:1072:57:2022:-155.878,0,-70.5967	1/1:85:3,82:3:108:82:2915:-252.511,-15.5124,0	0/1:86:43,43:43:1531:43:1532:-112.258,0,-112.189	1/1:251:2,248:2:72:248:8760:-781.437,-68.7806,0	0/1:316:162,154:162:5755:154:5433:-393.95,0,-422.087	0/1:73:40,33:40:1410:33:1171:-83.7215,0,-105.218	0/1:211:104,107:104:3679:107:3803:-278.93,0,-267.771	0/1:82:36,46:36:1262:46:1635:-122.733,0,-89.1873	0/1:86:43,43:43:1535:43:1504:-109.752,0,-112.554	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:10:0,10:0:0:10:360:-32.7304,-3.0103,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:252:-22.8363,-2.10721,0	0/1:319:164,155:164:5832:155:5509:-399.886,0,-428.776	1/1:78:0,78:0:0:78:2771:-249.609,-23.4803,0	0/1:90:44,46:44:1559:46:1628:-119.702,0,-113.508	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:126:59,67:59:2096:67:2377:-176.055,0,-150.966	0/1:68:40,28:40:1400:28:991:-69.0316,0,-105.023	0/1:166:93,73:93:3277:73:2545:-179.22,0,-245.145	0/1:133:58,75:58:2065:75:2651:-198.795,0,-146.036	1/1:116:0,115:0:0:115:4060:-365.203,-34.6185,0	1/1:68:0,68:0:0:68:2410:-217.139,-20.47,0	0/1:122:51,71:51:1819:71:2493:-187.862,0,-127.247	1/1:122:2,120:2:72:120:4250:-375.82,-29.8889,0	0/1:133:68,65:68:2388:65:2279:-165.314,0,-175.028	0/1:174:84,90:84:2996:90:3166:-232.78,0,-217.391	1/1:160:1,159:1:36:159:5553:-495.876,-44.598,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:128:1,127:1:36:127:4485:-400.184,-34.9336,0	0/1:56:29,27:29:1036:27:939:-67.9448,0,-76.6881	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:149:0,149:0:0:149:5261:-473.476,-44.8535,0	1/1:37:2,35:2:72:35:1240:-105.058,-4.30139,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:120:64,56:64:2271:56:1984:-142.706,0,-168.479	1/1:172:0,172:0:0:172:6051:-544.67,-51.7772,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:182:0,182:0:0:182:6427:-578.479,-54.7875,0	1/1:162:0,160:0:0:160:5655:-508.685,-48.1648,0	0/1:117:59,58:59:2096:58:2024:-147.202,0,-153.682	0/1:80:38,42:38:1360:42:1462:-107.788,0,-98.6157	1/1:180:3,177:3:104:177:6206:-548.884,-44.4826,0	1/1:157:1,156:1:36:156:5447:-486.744,-43.6634,0	1/1:81:0,81:0:0:81:2856:-257.255,-24.3834,0	1/1:75:0,75:0:0:75:2667:-240.251,-22.5773,0	1/1:146:0,146:0:0:146:5153:-463.881,-43.9504,0	0/1:25:10,15:10:351:15:528:-40.3194,0,-24.4009	1/1:116:0,116:0:0:116:4103:-369.033,-34.9195,0	0/1:67:28,39:28:996:39:1396:-105.731,0,-69.7695	1/1:162:0,162:0:0:162:5705:-513.535,-48.7669,0	0/1:155:76,79:76:2687:79:2785:-204.107,0,-195.416	0/1:131:54,77:54:1928:77:2707:-204.405,0,-134.359	1/1:157:2,155:2:72:155:5506:-488.825,-40.425,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:82:0,82:0:0:82:2921:-263.099,-24.6845,0	1/1:141:1,140:1:36:140:4928:-439.98,-38.847,0	1/1:180:0,180:0:0:180:6347:-571.275,-54.1854,0	0/1:134:65,69:65:2319:69:2408:-176.629,0,-168.619	1/1:137:0,137:0:0:137:4778:-429.849,-41.2411,0	0/1:175:88,87:88:3128:87:3085:-225.061,0,-229.059	0/1:251:130,121:130:4612:121:4247:-306.833,0,-339.665	0/1:57:22,35:22:788:35:1220:-92.942,0,-54.0857	0/1:123:67,56:67:2369:56:1937:-137.567,0,-176.389	1/1:127:0,127:0:0:127:4417:-397.418,-38.2308,0	0/1:116:57,59:57:2032:59:2020:-147.139,0,-148.231	0/1:155:75,80:75:2636:80:2801:-205.331,0,-190.786	0/1:146:92,54:92:3296:54:1907:-127.95,0,-252.904	1/1:139:0,139:0:0:139:4832:-435.023,-41.8432,0	1/1:238:1,237:1:36:237:8311:-744.122,-68.0469,0
chr06	33194318	.	C	T	126127	PASS	AB=0.722032;ABP=1005.86;AC=143;AF=0.760638;AN=188;AO=5759;CIGAR=1X;DP=6423;DPB=6423;DPRA=0;EPP=12249.3;EPPR=1397.42;GTI=12;LEN=1;MEANALT=1.02128;MQM=59.9338;MQMR=59.9955;NS=94;NUMALT=1;ODDS=3.23913;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205972;QR=23447;RO=662;RPL=30;RPP=12249.3;RPPR=1397.42;RPR=5729;RUN=1;SAF=5759;SAP=12508.5;SAR=0;SRF=662;SRP=1440.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:11,21:11:392:21:748:-58.0123,0,-25.9871	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:124:30,94:30:1060:94:3384:-267.446,0,-58.3836	1/1:279:0,279:0:0:279:9963:-895.344,-83.9874,0	1/1:33:0,33:0:0:33:1188:-107.226,-9.93399,0	1/1:39:0,39:0:0:39:1395:-125.848,-11.7402,0	1/1:99:0,99:0:0:99:3525:-317.46,-29.802,0	0/1:86:17,69:17:608:69:2480:-197.564,0,-29.1634	1/1:85:0,84:0:0:84:3002:-270.16,-25.2865,0	0/1:63:22,41:22:780:41:1460:-112.731,0,-51.5581	0/1:27:9,18:9:324:18:648:-50.5241,0,-21.378	1/1:83:0,83:0:0:83:2966:-267.172,-24.9855,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:31:17,14:17:608:14:490:-35.0992,0,-45.7201	0/1:49:21,28:21:748:28:1008:-76.2859,0,-52.8948	1/1:54:0,54:0:0:54:1944:-175.23,-16.2556,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:27:0,27:0:0:27:963:-86.9859,-8.12781,0	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/1:119:23,96:23:819:96:3443:-274.259,0,-38.209	1/1:99:0,99:0:0:99:3533:-318.178,-29.802,0	1/1:180:1,179:1:36:179:6423:-574.534,-50.5871,0	0/1:96:36,60:36:1260:60:2152:-165.048,0,-84.8007	1/1:64:0,64:0:0:64:2283:-205.732,-19.2659,0	0/1:37:7,30:7:248:30:1072:-85.6543,0,-11.5261	1/1:284:0,284:0:0:284:10146:-913.071,-85.4925,0	0/1:109:34,75:34:1201:75:2688:-209.339,0,-75.5814	0/1:16:4,12:4:140:12:428:-34.0423,0,-8.1281	0/1:121:30,91:30:1068:91:3268:-257.913,0,-60.0074	0/1:75:24,51:24:837:51:1807:-140.332,0,-53.0684	0/1:84:21,63:21:748:63:2260:-178.376,0,-42.3588	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:116:33,83:33:1158:83:2965:-232.163,0,-69.6056	1/1:142:0,142:0:0:142:5053:-454.914,-42.7463,0	0/1:17:2,15:2:72:15:540:-43.819,0,-1.71921	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:94:15,78:15:536:78:2792:-223.311,0,-20.3598	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:113:20,93:20:701:93:3336:-266.441,0,-29.3953	0/1:25:3,22:3:104:22:784:-63.3576,0,-2.17706	1/1:43:0,43:0:0:43:1525:-137.542,-12.9443,0	1/1:105:0,105:0:0:105:3737:-336.497,-31.6082,0	0/1:78:18,60:18:644:60:2133:-168.756,0,-34.8103	1/1:176:1,175:1:36:175:6245:-558.544,-49.383,0	0/1:28:5,23:5:180:23:828:-66.3928,0,-8.12322	0/1:79:20,59:20:720:59:2101:-165.576,0,-41.3474	1/1:103:0,103:0:0:103:3691:-332.378,-31.0061,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:112:0,112:0:0:112:4011:-361.165,-33.7154,0	1/1:45:3,42:3:108:42:1495:-124.768,-3.47118,0	0/1:11:6,5:6:212:5:176:-12.8737,0,-16.1135	1/1:91:0,91:0:0:91:3258:-293.432,-27.3937,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:16:0,16:0:0:16:557:-50.4556,-4.81648,0	0/1:49:15,34:15:531:34:1215:-94.9039,0,-33.3714	1/1:87:2,85:2:72:85:3052:-268.072,-19.3529,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:203:0,203:0:0:203:7253:-652.823,-61.1091,0	1/1:162:0,162:0:0:162:5798:-521.803,-48.7669,0	0/1:35:8,27:8:288:27:972:-77.2619,0,-15.7314	0/1:47:9,38:9:290:38:1368:-109.272,0,-12.2637	1/1:119:0,119:0:0:119:4260:-383.546,-35.8226,0	1/1:98:1,97:1:36:97:3480:-309.813,-25.9027,0	1/1:33:1,32:1:36:32:1152:-100.392,-6.33572,0	1/1:26:1,25:1:36:25:884:-76.2795,-4.22851,0	1/1:20:1,19:1:36:19:684:-58.2921,-2.42233,0	0/1:16:3,13:3:108:13:468:-37.6432,0,-5.25869	1/1:98:0,98:0:0:98:3485:-313.822,-29.5009,0	0/1:30:9,21:9:324:21:749:-58.6166,0,-20.475	1/1:121:0,121:0:0:121:4328:-389.696,-36.4246,0	0/1:97:29,68:29:1032:68:2448:-191.366,0,-63.9936	0/1:57:13,44:13:468:44:1571:-124.508,0,-25.3009	1/1:71:1,70:1:36:70:2520:-223.453,-17.7749,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:85:0,85:0:0:85:3039:-273.74,-25.5876,0	1/1:145:0,145:0:0:145:5152:-463.821,-43.6494,0	1/1:155:0,155:0:0:155:5535:-498.258,-46.6597,0	0/1:29:8,21:8:284:21:752:-59.2764,0,-17.1735	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	0/1:28:11,17:11:388:17:608:-46.6232,0,-26.8285	0/1:61:18,43:18:636:43:1535:-120.078,0,-39.2052	0/1:18:8,10:8:284:10:356:-26.9627,0,-20.4848	0/1:51:22,29:22:776:29:1029:-77.5686,0,-54.8081	1/1:51:0,51:0:0:51:1836:-165.507,-15.3525,0	0/1:29:8,21:8:284:21:752:-59.2764,0,-17.1735	0/1:68:20,48:20:704:48:1712:-133.896,0,-43.2145	0/1:45:22,23:22:770:23:824:-60.937,0,-56.073	1/1:119:0,119:0:0:119:4271:-384.566,-35.8226,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0
chr06	33194345	.	T	A	7529.58	PASS	AB=0.304659;ABP=742.774;AC=45;AF=0.239362;AN=188;AO=691;CIGAR=1X;DP=5949;DPB=5949;DPRA=0.789352;EPP=1503.5;EPPR=11416.3;GTI=10;LEN=1;MEANALT=1.03704;MQM=59.9305;MQMR=59.9502;NS=94;NUMALT=1;ODDS=0.159498;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24587;QR=184319;RO=5256;RPL=691;RPP=1503.5;RPPR=11416.3;RPR=0;RUN=1;SAF=691;SAP=1503.5;SAR=0;SRF=5256;SRP=11416.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:19,11:19:655:11:396:-26.9518,0,-50.2402	0/1:19:10,9:10:345:9:324:-23.7863,0,-25.6613	0/1:116:83,33:83:2932:33:1184:-71.9488,0,-229.195	0/0:267:267,0:267:9334:0:0:0,-80.375,-839.779	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/0:36:36,0:36:1248:0:0:0,-10.8371,-112.619	0/0:91:91,0:91:3212:0:0:0,-27.3937,-289.304	0/1:82:64,18:64:2264:18:644:-33.6061,0,-179.336	0/0:80:80,0:80:2779:0:0:0,-24.0824,-250.35	0/1:65:41,24:41:1437:24:864:-58.5156,0,-110.057	0/1:29:19,10:19:635:10:360:-24.0144,0,-48.7327	0/0:76:76,0:76:2679:0:0:0,-22.8783,-241.357	0/0:51:51,0:51:1762:0:0:0,-15.3525,-158.859	0/1:30:12,17:12:414:17:603:-45.5101,0,-28.5004	0/1:49:25,24:25:872:24:848:-61.887,0,-64.0432	0/0:47:47,0:47:1633:0:0:0,-14.1484,-147.25	0/0:22:22,0:22:749:0:0:0,-6.62266,-67.724	0/0:23:23,0:23:794:0:0:0,-6.92369,-71.7758	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:112:89,23:89:3149:23:815:-39.9308,0,-249.921	0/0:89:89,0:89:3116:0:0:0,-26.7917,-280.667	0/0:157:156,1:156:5495:1:36:0,-43.6634,-491.081	0/1:88:53,35:53:1859:35:1237:-85.142,0,-141.096	0/0:59:59,0:59:2081:0:0:0,-17.7608,-187.559	0/1:34:26,8:26:923:8:272:-14.5739,0,-73.1517	0/0:250:250,0:250:8780:0:0:0,-75.2575,-790.198	0/1:97:65,32:65:2258:32:1152:-74.7902,0,-174.279	0/1:16:12,4:12:424:4:144:-8.49714,0,-33.6799	0/1:114:84,30:84:2949:30:1064:-61.7536,0,-231.326	0/1:71:46,25:46:1613:25:900:-59.9479,0,-124.081	0/1:82:61,21:61:2163:21:756:-43.6828,0,-170.252	0/0:7:7,0:7:235:0:0:0,-2.10721,-21.4779	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:12:12,0:12:407:0:0:0,-3.61236,-36.9555	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3237	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/1:111:77,34:77:2677:34:1193:-74.2589,0,-207.761	0/0:119:119,0:119:4147:0:0:0,-35.8226,-373.419	0/1:20:15,5:15:515:5:180:-10.4903,0,-40.6544	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:90:72,18:72:2509:18:637:-30.5645,0,-198.968	0/1:8:5,2:5:168:2:72:-4.36968,0,-12.9879	0/1:107:86,21:86:3021:21:752:-35.796,0,-239.912	0/1:23:20,3:20:699:3:108:-3.15148,0,-56.3088	0/0:36:36,0:36:1255:0:0:0,-10.8371,-113.191	0/0:97:97,0:97:3420:0:0:0,-29.1999,-308.003	0/1:73:54,19:54:1872:19:667:-38.3794,0,-146.779	0/0:159:158,1:158:5559:1:36:0,-44.2655,-496.842	0/1:26:20,6:20:689:6:212:-11.598,0,-54.5018	0/1:73:52,21:52:1820:21:747:-45.5791,0,-142.103	0/0:97:97,0:97:3374:0:0:0,-29.1999,-303.745	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/0:104:104,0:104:3674:0:0:0,-31.3071,-330.864	0/0:41:38,3:38:1343:3:108:0,-2.26706,-111.094	0/1:11:4,7:4:140:7:248:-19.3529,0,-9.63325	0/0:83:83,0:83:2895:0:0:0,-24.9855,-260.783	0/0:29:29,0:29:1004:0:0:0,-8.72987,-90.6676	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:49:34,15:34:1194:15:513:-31.7418,0,-93.0133	0/0:81:80,1:80:2836:1:36:0,-20.7852,-251.879	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/0:188:187,1:187:6622:1:36:0,-52.9954,-592.464	0/0:152:152,0:152:5406:0:0:0,-45.7566,-486.14	0/1:32:24,8:24:856:8:288:-16.6344,0,-67.7281	0/1:49:36,13:36:1253:13:456:-26.6228,0,-98.3168	0/0:105:105,0:105:3684:0:0:0,-31.6081,-331.751	0/0:90:89,1:89:3095:1:36:0,-23.4944,-275.18	0/0:33:32,1:32:1117:1:36:0,-6.33571,-97.2369	0/0:24:23,1:23:806:1:36:0,-3.62644,-69.2599	0/0:20:20,0:20:697:0:0:0,-6.0206,-63.0507	0/1:16:13,3:13:449:3:108:-5.25869,0,-35.921	0/0:89:89,0:89:3111:0:0:0,-26.7917,-280.219	0/1:29:20,9:20:712:9:320:-20.4125,0,-55.3581	0/0:109:109,0:109:3799:0:0:0,-32.8123,-342.109	0/1:96:66,30:66:2347:30:1076:-68.254,0,-182.59	0/1:56:41,15:41:1442:15:516:-29.9057,0,-113.203	0/0:64:63,1:63:2231:1:36:0,-15.6676,-197.456	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:74:74,0:74:2609:0:0:0,-22.2762,-235.056	0/0:130:130,0:130:4588:0:0:0,-39.1339,-413.076	0/0:144:144,0:144:5077:0:0:0,-43.3483,-457.06	0/1:25:17,8:17:599:8:284:-18.3776,0,-46.7123	0/0:64:64,0:64:2245:0:0:0,-19.2659,-202.31	0/1:28:17,11:17:584:11:396:-27.5539,0,-44.4519	0/1:56:38,18:38:1330:18:640:-41.0716,0,-103.141	0/1:16:8,8:8:256:8:288:-21.4509,0,-18.5357	0/1:46:24,22:24:839:22:784:-57.035,0,-61.9799	0/0:48:48,0:48:1641:0:0:0,-14.4494,-147.959	0/1:27:20,7:20:694:7:252:-14.9011,0,-54.6526	0/1:63:43,20:43:1486:20:720:-46.1639,0,-115.064	0/1:45:22,23:22:751:23:815:-60.1244,0,-54.3596	0/0:105:105,0:105:3716:0:0:0,-31.6081,-334.64	0/0:80:80,0:80:2820:0:0:0,-24.0824,-254.039
chr06	33417747	.	C	A	26981.6	PASS	AB=0.527787;ABP=23.1634;AC=47;AF=0.252688;AN=186;AO=1597;CIGAR=1X;DP=6349;DPB=6349;DPRA=1.22323;EPP=3470.85;EPPR=10308.8;GTI=0;LEN=1;MEANALT=1.06;MQM=59.5128;MQMR=59.9739;NS=93;NUMALT=1;ODDS=0.263835;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57019;QR=170014;RO=4746;RPL=0;RPP=3470.85;RPPR=10308.8;RPR=1597;RUN=1;SAF=1597;SAP=3470.85;SAR=0;SRF=4746;SRP=10308.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:20,18:20:712:18:648:-47.1428,0,-52.9675	0/1:81:30,51:30:1072:51:1821:-139.497,0,-72.409	0/1:63:26,37:26:932:37:1320:-100.13,0,-65.234	0/0:109:109,0:109:3920:0:0:0,-32.8123,-352.991	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:124:64,60:64:2284:60:2126:-154.163,0,-168.494	0/0:112:111,1:111:3984:1:32:0,-30.516,-355.549	0/1:94:44,50:44:1568:50:1777:-131.774,0,-113.115	0/1:40:21,19:21:756:19:684:-49.8422,0,-56.326	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.743	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:55:25,30:25:884:30:1061:-79.2218,0,-63.3217	0/1:46:27,19:27:968:19:680:-47.6772,0,-73.59	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:32:19,13:19:684:13:468:-32.5196,0,-52.2574	0/1:121:42,79:42:1512:79:2840:-219.363,0,-99.9484	0/0:135:135,0:135:4832:0:0:0,-40.639,-435.035	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:60:31,27:31:1108:27:968:-69.6109,0,-82.2116	0/0:181:181,0:181:6476:0:0:0,-54.4864,-582.925	0/1:53:29,24:29:1040:24:863:-62.0379,0,-77.9598	0/0:182:181,1:181:6496:1:36:0,-51.1892,-580.967	0/1:162:46,116:46:1652:116:4102:-320.565,0,-100.202	0/1:30:12,18:12:424:18:644:-49.2551,0,-29.4655	0/1:165:80,85:80:2868:85:3033:-223.473,0,-208.687	0/1:97:51,46:51:1820:46:1633:-118.029,0,-134.878	0/1:70:37,33:37:1328:33:1165:-84.0655,0,-98.7501	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:192:85,106:85:3048:106:3777:-282.211,0,-216.693	0/0:163:162,0:162:5800:0:0:0,-48.7669,-521.754	0/1:47:25,22:25:896:22:792:-57.4396,0,-66.8119	.:.:.:.:.:.:.:.	0/1:87:42,45:42:1508:45:1605:-118.54,0,-109.825	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:114:63,51:63:2260:51:1828:-130.464,0,-169.345	0/1:70:48,22:48:1716:22:792:-50.5243,0,-133.654	0/0:33:32,0:32:1144:0:0:0,-9.63296,-103.055	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:77:40,37:40:1436:37:1309:-94.895,0,-106.358	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.788	0/1:56:33,23:33:1176:23:813:-56.6268,0,-89.2901	0/1:75:45,30:45:1612:30:1080:-74.9222,0,-122.793	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:28:20,8:20:720:8:288:-17.8376,0,-56.6999	0/0:106:106,0:106:3791:0:0:0,-31.9092,-341.388	0/1:4:3,1:3:108:1:36:-2.38905,0,-8.87105	0/0:137:137,0:137:4916:0:0:0,-41.2411,-442.59	0/0:83:82,1:82:2944:1:36:0,-21.3872,-261.595	0/1:53:33,20:33:1180:20:720:-49.1742,0,-90.5535	0/1:32:15,17:15:536:17:608:-45.4191,0,-38.9419	0/0:254:252,2:252:9016:2:72:0,-69.6297,-804.564	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3237	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/1:9:4,5:4:144:5:176:-13.4759,0,-10.6043	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.182	0/1:65:21,44:21:756:44:1550:-120.22,0,-48.8003	0/0:89:89,0:89:3173:0:0:0,-26.7917,-285.793	0/1:111:40,71:40:1436:71:2548:-194.957,0,-96.1233	0/1:84:39,45:39:1400:45:1605:-119.432,0,-101.013	0/0:89:86,3:86:3080:3:108:0,-16.7165,-267.353	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.516	0/0:114:114,0:114:4092:0:0:0,-34.3174,-368.465	0/1:81:37,44:37:1328:44:1580:-118.097,0,-94.4175	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:59:20,39:20:720:39:1404:-108.889,0,-47.368	0/1:134:61,73:61:2184:73:2605:-194.347,0,-156.488	0/1:48:24,24:24:864:24:860:-63.2653,0,-63.6331	0/1:70:29,41:29:1040:41:1476:-112.047,0,-72.8423	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/1:41:23,18:23:828:18:648:-46.3015,0,-62.5019	0/1:52:26,26:26:936:26:934:-68.5957,0,-68.9059	0/1:72:28,43:28:1004:43:1544:-117.516,0,-68.943	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115
chr06	33417754	.	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chr06	33452894	.	T	A	93564	PASS	AB=0.521137;ABP=13.6587;AC=144;AF=0.765957;AN=188;AO=4527;CIGAR=1X;DP=5853;DPB=5853;DPRA=15.7231;EPP=9833.27;EPPR=2878.04;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9918;MQMR=59.9751;NS=94;NUMALT=1;ODDS=0.921703;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159222;QR=47273;RO=1324;RPL=0;RPP=9833.27;RPPR=2878.04;RPR=4527;RUN=1;SAF=0;SAP=9833.27;SAR=4527;SRF=0;SRP=2878.04;SRR=1324;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:11,14:11:396:14:488:-36.7247,0,-28.457	0/1:45:22,23:22:788:23:811:-59.7636,0,-57.6984	0/1:217:96,121:96:3433:121:4299:-321.766,0,-243.858	1/1:203:1,202:1:36:202:7106:-636.012,-57.5108,0	1/1:32:0,32:0:0:32:1109:-100.112,-9.63296,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:62:0,62:0:0:62:2191:-197.456,-18.6639,0	0/1:71:36,35:36:1292:35:1209:-87.7377,0,-95.2106	1/1:40:0,40:0:0:40:1379:-124.403,-12.0412,0	0/1:58:22,36:22:784:36:1274:-97.5017,0,-53.4242	0/1:57:26,31:26:924:31:1100:-82.1516,0,-66.3189	1/1:54:0,54:0:0:54:1910:-172.176,-16.2556,0	1/1:51:0,51:0:0:51:1807:-162.911,-15.3525,0	0/1:63:35,28:35:1252:28:996:-70.9441,0,-94.0202	0/1:49:27,22:27:968:22:758:-53.7862,0,-72.6869	1/1:49:0,49:0:0:49:1711:-154.272,-14.7505,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:28:0,28:0:0:28:988:-89.2339,-8.42884,0	0/1:32:16,16:16:568:16:561:-41.1842,0,-41.8189	0/1:95:40,55:40:1421:55:1944:-146.636,0,-99.5876	1/1:80:0,79:0:0:79:2772:-249.326,-23.7814,0	1/1:69:0,69:0:0:69:2432:-219.133,-20.7711,0	0/1:36:16,20:16:572:20:712:-53.5696,0,-40.9763	1/1:13:0,13:0:0:13:455:-41.282,-3.91339,0	0/1:23:17,6:17:612:6:212:-12.5011,0,-48.4897	1/1:140:0,140:0:0:140:4934:-444.215,-42.1442,0	0/1:122:58,64:58:2060:64:2253:-166.307,0,-148.946	0/1:24:13,11:13:455:11:373:-26.6705,0,-34.0572	0/1:176:79,97:79:2832:97:3377:-251.165,0,-202.137	0/1:84:53,31:53:1882:31:1074:-71.68,0,-144.371	0/1:54:18,36:18:635:36:1273:-98.6169,0,-41.2213	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:129:72,57:72:2563:57:1999:-141.348,0,-192.087	1/1:76:0,76:0:0:76:2676:-241.085,-22.8783,0	0/1:52:25,27:25:900:27:933:-68.6268,0,-65.6675	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:119:45,74:45:1608:74:2576:-196.268,0,-109.188	1/1:25:0,25:0:0:25:835:-75.454,-7.52575,0	0/1:79:27,52:27:960:52:1830:-141.198,0,-62.9349	0/1:32:15,17:15:540:17:600:-44.6962,0,-39.3036	1/1:37:0,37:0:0:37:1311:-118.291,-11.1381,0	1/1:29:0,29:0:0:29:1018:-91.9304,-8.72987,0	0/1:42:24,18:24:860:18:640:-45.2861,0,-65.0786	1/1:105:2,103:2:72:103:3630:-320.07,-24.7714,0	0/1:49:29,20:29:1036:20:697:-48.3012,0,-78.8034	0/1:140:63,77:63:2260:77:2736:-204.34,0,-161.518	1/1:101:0,101:0:0:101:3477:-313.146,-30.404,0	0/1:5:1,4:1:32:4:140:-11.4394,0,-1.69416	1/1:75:0,75:0:0:75:2634:-237.309,-22.5773,0	0/1:55:24,31:24:856:31:1086:-81.4909,0,-60.8045	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:136:0,136:0:0:136:4770:-429.462,-40.9401,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	0/1:72:35,37:35:1256:37:1286:-94.3651,0,-91.6711	1/1:68:0,68:0:0:68:2373:-213.826,-20.47,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:223:0,223:0:0:223:7860:-707.435,-67.1297,0	1/1:96:1,95:1:36:95:3365:-299.469,-25.3006,0	0/1:72:30,42:30:1068:42:1487:-112.45,0,-74.7497	0/1:48:18,30:18:644:30:1044:-79.8175,0,-43.8412	1/1:79:2,77:2:72:77:2717:-237.937,-16.9446,0	1/1:101:1,100:1:36:100:3539:-315.124,-26.8058,0	1/1:44:0,44:0:0:44:1548:-139.609,-13.2453,0	1/1:30:0,30:0:0:30:1024:-92.4647,-9.0309,0	1/1:43:0,43:0:0:43:1526:-137.632,-12.9443,0	0/1:26:15,11:15:528:11:396:-28.156,0,-40.0246	1/1:84:0,84:0:0:84:2975:-267.984,-25.2865,0	0/1:73:36,37:36:1284:37:1316:-96.7666,0,-93.8882	1/1:50:0,50:0:0:50:1761:-158.772,-15.0515,0	1/1:175:0,175:0:0:175:6147:-553.336,-52.6803,0	0/1:73:39,34:39:1388:34:1203:-86.5998,0,-103.244	1/1:100:0,100:0:0:100:3498:-315.034,-30.103,0	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	1/1:77:0,77:0:0:77:2748:-247.563,-23.1793,0	1/1:97:0,97:0:0:97:3444:-310.173,-29.1999,0	1/1:64:0,64:0:0:64:2240:-201.862,-19.2659,0	0/1:57:28,28:28:1000:28:1004:-73.4584,0,-73.098	1/1:52:0,52:0:0:52:1799:-162.188,-15.6536,0	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/1:91:38,53:38:1356:53:1875:-141.635,0,-94.9468	0/1:22:8,14:8:288:14:492:-37.9897,0,-19.6447	0/1:44:24,20:24:864:20:695:-49.6261,0,-64.8372	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	0/1:30:18,12:18:636:12:428:-29.8279,0,-48.5353	0/1:146:80,66:80:2860:66:2336:-166.55,0,-213.581	0/1:41:27,14:27:964:14:504:-33.3559,0,-74.7346	1/1:95:0,95:0:0:95:3310:-298.119,-28.5979,0	1/1:54:0,54:0:0:54:1908:-171.995,-16.2556,0
chr06	33563660	.	AGCAGAACA	AGCAAAACA,AGCAAAACC	170325	PASS	AB=0.560063,0.433914;ABP=101.873,122.692;AC=142,46;AF=0.755319,0.244681;AN=188;AO=6460,1392;CIGAR=4M1X4M,4M1X3M1X;DP=7934;DPB=7946.56;DPRA=42.6452,0.836287;EPP=14030.7,3025.7;EPPR=7.35324;GTI=4;LEN=1,9;MEANALT=2.10753,2.38462;MQM=59.946,50.3384;MQMR=60;NS=94;NUMALT=2;ODDS=2.75534;PAIRED=0,0;PAIREDR=0;PAO=21.6667,8;PQA=634,229;PQR=634;PRO=21.6667;QA=231508,48938;QR=72;RO=2;RPL=0,0;RPP=14030.7,3025.7;RPPR=7.35324;RPR=6460,1392;RUN=1,1;SAF=6460,1392;SAP=14030.7,3025.7;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:9:0,8,1:0:0:8,1:288,36:-26.7858,-3.28545,-0.877212,-23.8592,0,-23.5581	1/2:24:0,19,5:0:0:19,5:680,174:-69.9134,-14.453,-8.73341,-55.8096,0,-54.3044	1/2:113:0,73,39:0:0:73,39:2624,1380:-325.519,-111.442,-89.4665,-214.03,0,-202.289	1/1:274:0,273,0:0:0:273,0:9801,0:-881.459,-82.1812,0,-881.459,-82.1812,-881.459	1/1:41:0,41,0:0:0:41,0:1472,0:-132.673,-12.3422,0,-132.673,-12.3422,-132.673	1/1:35:0,32,0:0:0:32,0:1148,0:-103.27,-9.63296,0,-103.27,-9.63296,-103.27	1/1:87:0,87,0:0:0:87,0:3113,0:-280.133,-26.1896,0,-280.133,-26.1896,-280.133	1/2:99:0,51,48:0:0:51,48:1813,1685:-284.178,-136.435,-121.082,-147.634,0,-133.185	1/1:78:0,77,1:0:0:77,1:2772,36:-249.257,-23.1793,0,-246.331,-19.8939,-246.03	1/2:86:0,54,32:0:0:54,32:1929,1100:-245.98,-88.6994,-72.4438,-157.525,0,-147.892	1/2:41:0,23,18:0:0:23,18:828,642:-120.07,-52.5069,-45.5832,-67.9204,0,-62.5019	1/1:74:0,73,0:0:0:73,0:2583,0:-232.355,-21.9752,0,-232.355,-21.9752,-232.355	1/1:70:0,68,0:0:0:68,0:2433,0:-218.838,-20.47,0,-218.838,-20.47,-218.838	1/2:54:0,27,27:0:0:27,27:968,951:-155.649,-76.693,-68.5652,-79.2587,0,-71.1309	1/2:66:0,36,30:0:0:36,30:1296,1067:-192.581,-86.8257,-75.9886,-105.917,0,-96.8866	1/1:67:0,65,0:0:0:65,0:2336,0:-210.139,-19.567,0,-210.139,-19.567,-210.139	1/1:30:0,29,0:0:0:29,0:1044,0:-93.915,-8.72987,0,-93.915,-8.72987,-93.915	1/1:26:0,25,0:0:0:25,0:900,0:-80.9612,-7.52575,0,-80.9612,-7.52575,-80.9612	1/2:35:0,15,20:0:0:15,20:540,707:-101.806,-57.742,-53.2265,-44.4211,0,-38.4005	1/2:117:0,72,45:0:0:72,45:2584,1550:-335.787,-125.001,-103.327,-210.799,0,-197.253	1/1:148:0,147,0:0:0:147,0:5284,0:-475.285,-44.2514,0,-475.285,-44.2514,-475.285	1/1:47:0,47,0:0:0:47,0:1684,0:-151.847,-14.1484,0,-151.847,-14.1484,-151.847	1/2:37:0,22,15:0:0:22,15:777,515:-104.963,-41.6808,-35.0581,-63.6277,0,-59.1123	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:56:0,30,26:0:0:30,26:1076,926:-162.863,-75.0962,-66.0653,-88.122,0,-80.2952	1/1:217:0,215,0:0:0:215,0:7698,0:-692.433,-64.7215,0,-692.433,-64.7215,-692.433	1/2:152:0,77,75:0:0:77,75:2772,2666:-442.144,-215.967,-192.787,-226.378,0,-203.801	1/2:39:0,22,17:0:0:22,17:792,609:-114.473,-49.8486,-43.226,-64.983,0,-59.8655	1/2:180:0,123,57:0:0:123,57:4405,1996:-520.757,-161.519,-124.492,-359.226,0,-342.068	1/2:79:0,45,34:0:0:45,34:1601,1184:-226.261,-95.7787,-82.2324,-130.832,0,-120.597	1/2:68:0,37,31:0:0:37,31:1328,1101:-198.091,-89.7629,-78.6248,-108.684,0,-99.3522	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:32:0,32,0:0:0:32,0:1152,0:-103.99,-9.63296,0,-103.99,-9.63296,-103.99	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:161:0,96,63:0:0:96,63:3452,2231:-462.617,-180.981,-152.083,-281.631,0,-262.666	1/1:99:0,98,0:0:0:98,0:3528,0:-317.288,-29.5009,0,-317.288,-29.5009,-317.288	1/2:31:0,17,14:0:0:17,14:608,488:-89.3464,-39.7633,-34.6458,-49.9345,0,-45.7201	2/2:2:0,0,2:0:0:0,2:0,71:-6.72193,-6.72193,-6.72193,-0.60206,-0.60206,0	1/2:109:0,72,37:0:0:72,37:2580,1305:-316.31,-105.898,-84.224,-210.764,0,-199.626	1/1:36:0,34,0:0:0:34,0:1224,0:-110.082,-10.235,0,-110.082,-10.235,-110.082	1/2:95:0,42,53:0:0:42,53:1512,1851:-272.774,-149.396,-136.753,-123.731,0,-107.777	1/2:39:0,19,20:0:0:19,20:684,718:-114.243,-58.4299,-52.7104,-56.1708,0,-50.1502	1/1:40:0,37,0:0:0:37,0:1332,0:-119.821,-11.1381,0,-119.821,-11.1381,-119.821	1/1:110:0,108,0:0:0:108,0:3861,0:-347.384,-32.5112,0,-347.384,-32.5112,-347.384	1/2:85:0,50,33:0:0:50,33:1785,1173:-240.517,-94.993,-79.9415,-145.519,0,-135.586	1/1:157:0,151,3:0:0:151,3:5421,99:-487.672,-45.4555,0,-479.69,-37.4861,-478.787	1/2:81:0,43,38:0:0:43,38:1540,1338:-233.605,-108.009,-95.0651,-125.949,0,-114.51	1/2:135:0,76,58:0:0:76,58:2736,2027:-387.111,-163.86,-140.981,-223.273,0,-205.813	1/1:98:0,89,0:0:0:89,0:3200,0:-287.813,-26.7917,0,-287.813,-26.7917,-287.813	1/2:9:0,6,3:0:0:6,3:216,107:-26.6757,-9.04829,-7.24211,-17.9843,0,-17.0812	1/1:149:0,149,0:0:0:149,0:5330,0:-479.82,-44.8535,0,-479.82,-44.8535,-479.82	1/2:98:0,46,51:0:0:46,51:1656,1790:-279.842,-144.718,-130.871,-135.193,0,-119.84	1/2:9:0,3,6:0:0:3,6:108,215:-26.6435,-17.8303,-16.9272,-9.17208,0,-7.3659	1/1:207:0,206,0:0:0:206,0:7389,0:-664.587,-62.0122,0,-664.587,-62.0122,-664.587	1/1:11:0,11,0:0:0:11,0:396,0:-35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chr06	33563677	.	T	A	21726.1	PASS	AB=0.43904;ABP=105.203;AC=46;AF=0.244681;AN=188;AO=1414;CIGAR=1X;DP=7910;DPB=7910;DPRA=0.853824;EPP=3073.47;EPPR=14089.4;GTI=4;LEN=1;MEANALT=1.07547;MQM=50.4936;MQMR=59.9572;NS=94;NUMALT=1;ODDS=1.49118;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50753;QR=232616;RO=6491;RPL=0;RPP=3073.47;RPPR=14098;RPR=1414;RUN=1;SAF=1414;SAP=3073.47;SAR=0;SRF=6490;SRP=14089.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:7,1:7:252:1:36:-1.17824,0,-20.6207	0/1:24:19,5:19:684:5:180:-9.2731,0,-54.6656	0/1:113:73,40:73:2624:40:1440:-94.1989,0,-202.39	0/0:278:278,0:278:9974:0:0:0,-83.6863,-897.593	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.228	0/1:99:51,48:51:1820:48:1727:-125.284,0,-134.279	0/0:78:77,1:77:2764:1:36:0,-19.8939,-245.415	0/1:87:56,31:56:2012:31:1108:-72.9932,0,-155.163	0/1:40:22,18:22:792:18:648:-46.4185,0,-59.5645	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.33	0/1:55:28,26:28:1004:26:936:-66.8887,0,-74.0616	0/1:70:37,33:37:1332:33:1188:-85.837,0,-99.1103	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:37:15,22:15:536:22:792:-60.2542,0,-37.4367	0/1:115:70,45:70:2516:45:1604:-109.085,0,-192.073	0/0:144:144,0:144:5125:0:0:0,-43.3483,-461.394	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:37:22,15:22:788:15:540:-36.9691,0,-60.1067	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:58:31,27:31:1104:27:972:-69.544,0,-82.2109	0/0:216:216,0:216:7744:0:0:0,-65.0225,-696.986	0/1:152:77,75:77:2752:75:2688:-194.885,0,-202.16	0/1:39:22,17:22:788:17:612:-43.4917,0,-59.5046	0/1:180:122,58:122:4388:58:2069:-130.849,0,-340.901	0/1:80:44,36:44:1580:36:1296:-91.7344,0,-118.409	0/1:65:34,31:34:1220:31:1112:-80.5006,0,-90.5399	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:162:98,64:98:3528:64:2300:-157.69,0,-268.96	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.47	0/1:31:17,14:17:608:14:504:-36.0686,0,-45.7201	1/1:2:0,2:0:0:2:72:-6.81432,-0.60206,0	0/1:111:71,40:71:2548:40:1436:-95.3731,0,-196.156	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:93:41,52:41:1450:52:1868:-138.822,0,-102.799	0/1:39:18,20:18:648:20:720:-52.8657,0,-46.8907	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.658	0/0:107:106,1:106:3791:1:36:0,-28.6119,-337.786	0/1:84:51,33:51:1819:33:1184:-80.9743,0,-138.704	0/0:157:154,3:154:5524:3:108:0,-37.2196,-487.242	0/1:81:43,38:43:1544:38:1346:-95.5341,0,-114.87	0/1:139:78,61:78:2804:61:2177:-153.124,0,-210.756	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.528	0/1:9:6,3:6:216:3:108:-7.33288,0,-17.0812	0/0:148:148,0:148:5291:0:0:0,-44.5524,-476.219	0/1:99:47,52:47:1692:52:1868:-137.059,0,-122.761	0/1:9:3,6:3:108:6:216:-17.0164,0,-7.3659	0/0:205:205,0:205:7326:0:0:0,-61.7111,-659.39	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/1:7:3,4:3:108:4:144:-11.1628,0,-7.96796	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:68:51,17:51:1823:17:612:-34.6167,0,-143.835	0/0:90:90,0:90:3223:0:0:0,-27.0927,-290.269	0/1:11:5,6:5:180:6:212:-16.0551,0,-13.2407	0/0:344:343,0:343:12296:0:0:0,-103.253,-1106	0/0:161:156,5:156:5565:5:180:0,-31.968,-484.474	0/1:62:32,30:32:1139:30:1080:-78.5298,0,-84.1545	0/1:87:57,30:57:2048:30:1080:-71.0254,0,-158.402	0/0:162:156,6:156:5596:6:216:0,-29.7923,-484.786	0/0:190:187,3:187:6728:3:108:0,-47.1535,-595.547	0/0:33:32,1:32:1152:1:36:0,-6.34751,-100.404	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.919	0/1:26:19,7:19:684:7:252:-15.1267,0,-54.0635	0/0:129:129,0:129:4612:0:0:0,-38.8329,-415.245	0/1:123:81,42:81:2904:42:1508:-98.2278,0,-224.565	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.187	0/0:171:171,0:171:6139:0:0:0,-51.4761,-552.562	0/1:162:72,90:72:2571:90:3222:-239.583,0,-182.872	0/0:129:129,0:129:4640:0:0:0,-38.8329,-417.76	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:127:127,0:127:4564:0:0:0,-38.2308,-410.924	0/0:153:153,0:153:5461:0:0:0,-46.0576,-491.588	0/0:147:147,0:147:5268:0:0:0,-44.2514,-474.256	0/1:45:23,22:23:824:22:788:-57.1436,0,-60.937	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:54:41,13:41:1472:13:468:-26.0709,0,-116.521	0/1:128:66,62:66:2372:62:2232:-161.822,0,-175.204	0/1:17:9,8:9:324:8:288:-20.8931,0,-24.3883	0/1:75:35,40:35:1256:40:1440:-106.646,0,-90.768	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:42:17,25:17:600:25:900:-67.8915,0,-41.6859	0/1:81:42,38:42:1508:38:1368:-97.9295,0,-111.612	0/1:62:17,45:17:603:45:1620:-126.687,0,-35.9356	0/0:289:289,0:289:10321:0:0:0,-86.9977,-928.773	0/0:94:91,2:91:3268:2:72:0,-21.5409,-287.525
chr06	33563707	.	T	G	137724	PASS	AB=0.564454;ABP=116.099;AC=142;AF=0.755319;AN=188;AO=6414;CIGAR=1X;DP=7804;DPB=7804;DPRA=41.9462;EPP=13922.1;EPPR=3010.5;GTI=4;LEN=1;MEANALT=1.05376;MQM=59.9471;MQMR=50.6116;NS=94;NUMALT=1;ODDS=1.60523;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229127;QR=49484;RO=1385;RPL=6413;RPP=13922.1;RPPR=3010.5;RPR=1;RUN=1;SAF=6412;SAP=13913.5;SAR=2;SRF=1385;SRP=3010.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.877212	0/1:24:5,19:5:180:19:675:-53.8522,0,-9.2731	0/1:115:41,74:41:1476:74:2636:-202.869,0,-96.8354	1/1:271:0,271:0:0:271:9711:-873.937,-81.5791,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:34:0,34:0:0:34:1216:-109.746,-10.235,0	1/1:85:0,85:0:0:85:3035:-273.379,-25.5876,0	0/1:96:49,47:49:1752:47:1671:-121.778,0,-128.421	1/1:77:1,76:1:36:76:2732:-242.536,-19.5928,0	0/1:84:29,55:29:1036:55:1961:-151.477,0,-67.4403	0/1:40:17,23:17:612:23:820:-62.0813,0,-43.1906	1/1:72:0,72:0:0:72:2558:-230.47,-21.6742,0	1/1:68:0,67:0:0:67:2396:-215.634,-20.169,0	0/1:50:24,26:24:843:26:924:-68.4262,0,-60.3892	0/1:70:32,38:32:1137:38:1360:-101.628,0,-81.256	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	1/1:28:0,28:0:0:28:987:-89.1437,-8.42884,0	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	0/1:37:22,15:22:788:15:536:-37.4367,0,-59.8997	0/1:115:44,71:44:1575:71:2541:-194.321,0,-106.298	1/1:144:0,144:0:0:144:5141:-462.831,-43.3483,0	1/1:45:0,45:0:0:45:1597:-144.018,-13.5464,0	0/1:36:15,21:15:540:21:752:-57.1692,0,-37.2701	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:58:27,31:27:955:31:1105:-82.2998,0,-68.033	1/1:211:1,210:1:36:210:7488:-670.359,-59.9191,0	0/1:149:74,75:74:2647:75:2692:-197.665,0,-192.285	0/1:39:17,22:17:608:22:788:-59.5046,0,-43.1366	0/1:174:54,120:54:1932:120:4304:-335.152,0,-121.096	0/1:82:36,46:36:1277:46:1629:-122.199,0,-89.4362	0/1:68:31,37:31:1112:37:1332:-99.7123,0,-79.5975	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:32:0,32:0:0:32:1133:-102.277,-9.63296,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:159:63,96:63:2255:96:3422:-260.329,0,-154.564	1/1:97:0,97:0:0:97:3475:-312.941,-29.1999,0	0/1:31:14,17:14:496:17:608:-45.7201,0,-35.3576	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81432	0/1:112:40,72:40:1395:72:2580:-198.723,0,-91.3855	1/1:35:0,35:0:0:35:1251:-112.894,-10.5361,0	0/1:94:53,41:53:1900:41:1472:-104.479,0,-141.396	0/1:38:18,19:18:635:19:684:-50.409,0,-45.6781	1/1:39:0,39:0:0:39:1383:-124.768,-11.7402,0	1/1:107:1,106:1:36:106:3796:-338.238,-28.6119,0	0/1:86:33,53:33:1173:53:1885:-144.038,0,-79.3793	1/1:152:3,149:3:108:149:5351:-471.678,-35.7144,0	0/1:81:37,44:37:1316:44:1582:-117.86,0,-92.8186	0/1:136:59,77:59:2124:77:2772:-208.78,0,-149.63	1/1:96:0,96:0:0:96:3433:-309.175,-28.8989,0	0/1:9:3,5:3:108:5:180:-13.784,0,-7.27438	1/1:147:0,147:0:0:147:5249:-472.542,-44.2514,0	0/1:96:50,45:50:1796:45:1612:-116.568,0,-131.932	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0164	1/1:199:0,199:0:0:199:7110:-639.96,-59.905,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.1628	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:67:17,50:17:612:50:1777:-140.042,0,-34.9178	1/1:90:0,90:0:0:90:3210:-289.1,-27.0927,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4143	1/1:343:0,343:0:0:343:12253:-1102.5,-103.253,0	1/1:157:5,152:5:180:152:5424:-471.791,-30.7639,0	0/1:65:30,35:30:1080:35:1256:-93.7783,0,-77.6267	0/1:87:30,57:30:1080:57:2021:-155.971,0,-71.0254	1/1:159:4,155:4:140:155:5548:-486.312,-35.2222,0	1/1:188:2,186:2:72:186:6647:-591.492,-49.7793,0	1/1:33:1,32:1:36:32:1144:-99.683,-6.34751,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.4277	1/1:126:0,126:0:0:126:4497:-404.898,-37.9298,0	0/1:122:40,82:40:1436:82:2910:-225.407,0,-92.0704	1/1:85:0,85:0:0:85:3028:-272.748,-25.5876,0	1/1:171:0,171:0:0:171:6081:-547.349,-51.4761,0	0/1:161:88,73:88:3151:73:2602:-185.963,0,-233.957	1/1:129:0,129:0:0:129:4616:-415.604,-38.8329,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:126:0,126:0:0:126:4528:-407.685,-37.9298,0	1/1:152:0,152:0:0:152:5428:-488.574,-45.7566,0	1/1:148:0,148:0:0:148:5265:-473.986,-44.5524,0	0/1:41:21,20:21:752:20:720:-52.7865,0,-55.0496	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	0/1:53:13,40:13:455:40:1422:-112.321,0,-25.21	0/1:126:60,66:60:2135:66:2326:-171.668,0,-153.754	0/1:17:8,9:8:288:9:324:-24.3883,0,-20.8931	0/1:74:38,36:38:1347:36:1290:-94.1276,0,-98.6283	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:41:25,16:25:896:16:572:-39.4712,0,-67.8383	0/1:79:37,42:37:1320:42:1484:-110.073,0,-94.2617	0/1:61:44,17:44:1576:17:612:-37.0506,0,-123.186	1/1:281:1,279:1:36:279:9941:-890.995,-81.05,0	1/1:91:2,89:2:72:89:3196:-281.048,-20.5794,0
chr06	33563713	.	A	G	20225.6	PASS	AB=0.430962;ABP=131.636;AC=46;AF=0.244681;AN=188;AO=1362;CIGAR=1X;DP=7811;DPB=7811;DPRA=0.836236;EPP=2960.56;EPPR=13987.3;GTI=4;LEN=1;MEANALT=1.01852;MQM=50.5793;MQMR=59.9283;NS=94;NUMALT=1;ODDS=3.12917;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48301;QR=229439;RO=6448;RPL=1362;RPP=2960.56;RPPR=14004.7;RPR=0;RUN=1;SAF=1362;SAP=2960.56;SAR=0;SRF=6446;SRP=13987.3;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:8,1:8:284:1:36:-0.877213,0,-23.1941	0/1:24:19,5:19:676:5:176:-8.91254,0,-53.9433	0/1:112:72,40:72:2580:40:1427:-93.9955,0,-198.734	0/0:277:277,0:277:9847:0:0:0,-83.3853,-886.184	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/0:35:35,0:35:1221:0:0:0,-10.536,-110.191	0/0:87:87,0:87:3100:0:0:0,-26.1896,-279.071	0/1:94:49,45:49:1725:45:1600:-115.487,0,-127.236	0/0:76:75,1:75:2688:1:36:0,-19.2918,-238.578	0/1:82:54,28:54:1913:28:1000:-65.088,0,-147.761	0/1:41:23,18:23:811:18:640:-45.4076,0,-60.9677	0/0:70:70,0:70:2474:0:0:0,-21.0721,-222.914	0/0:70:70,0:70:2488:0:0:0,-21.0721,-224.173	0/1:50:26,24:26:919:24:835:-59.8138,0,-67.9747	0/1:71:38,33:38:1360:33:1180:-84.8218,0,-101.327	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/1:37:15,22:15:540:22:775:-58.7418,0,-37.7984	0/1:115:70,45:70:2492:45:1608:-109.399,0,-189.915	0/0:146:146,0:146:5220:0:0:0,-43.9504,-469.939	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:35:22,13:22:784:13:460:-30.6849,0,-60.3479	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/1:55:31,24:31:1108:24:843:-58.8851,0,-83.4743	0/0:214:214,0:214:7618:0:0:0,-64.4204,-685.658	0/1:149:77,72:77:2709:72:2558:-184.501,0,-199.192	0/1:39:22,17:22:792:17:599:-42.332,0,-59.8655	0/1:176:119,57:119:4244:57:2020:-128.043,0,-329.155	0/1:81:45,36:45:1604:36:1273:-89.3834,0,-120.248	0/1:68:37,31:37:1328:31:1104:-78.8895,0,-99.3522	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:161:97,64:97:3438:64:2283:-156.483,0,-261.168	0/0:99:99,0:99:3524:0:0:0,-29.802,-317.291	0/1:29:17,12:17:612:12:432:-30.2148,0,-46.6836	1/1:2:0,2:0:0:2:72:-6.81432,-0.60206,0	0/1:108:70,38:70:2491:38:1347:-88.3034,0,-191.921	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:88:39,49:39:1396:49:1747:-129.622,0,-99.4485	0/1:39:19,20:19:684:20:707:-51.8088,0,-50.1502	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.725	0/0:107:106,1:106:3796:1:36:0,-28.6119,-338.236	0/1:83:52,31:52:1856:31:1103:-74.0201,0,-142.334	0/0:156:153,3:153:5464:3:99:0,-37.7475,-482.677	0/1:81:44,37:44:1564:37:1293:-91.035,0,-116.24	0/1:135:76,59:76:2719:59:2116:-149.17,0,-204.314	0/0:97:97,0:97:3439:0:0:0,-29.1999,-309.667	0/1:9:6,3:6:216:3:108:-7.33288,0,-17.0812	0/0:148:148,0:148:5233:0:0:0,-44.5524,-470.882	0/1:94:47,47:47:1680:47:1672:-121.702,0,-123.187	0/1:9:3,6:3:108:6:216:-17.0164,0,-7.3659	0/0:201:201,0:201:7152:0:0:0,-60.507,-643.742	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:7:3,4:3:104:4:144:-11.1628,0,-7.5956	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:65:49,16:49:1752:16:567:-31.5831,0,-138.352	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.481	0/1:11:5,6:5:180:6:216:-16.4143,0,-13.2407	0/0:340:340,0:340:12062:0:0:0,-102.35,-1085.33	0/0:158:153,5:153:5436:5:180:0,-31.0649,-472.873	0/1:63:33,30:33:1150:30:1071:-77.4264,0,-84.8396	0/1:89:59,30:59:2104:30:1061:-68.7261,0,-162.837	0/0:162:157,5:157:5591:5:180:0,-32.5335,-486.592	0/0:186:184,2:184:6559:2:72:0,-49.1773,-583.544	0/0:32:31,1:31:1094:1:32:0,-6.43839,-95.5737	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.717	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.961	0/1:25:19,6:19:680:6:216:-12.1999,0,-54.0034	0/0:128:128,0:128:4515:0:0:0,-38.5318,-406.522	0/1:122:81,41:81:2858:41:1445:-93.1539,0,-220.73	0/0:85:85,0:85:3024:0:0:0,-25.5875,-272.39	0/0:166:166,0:166:5915:0:0:0,-49.971,-532.417	0/1:161:72,89:72:2568:89:3176:-235.214,0,-182.904	0/0:130:130,0:130:4610:0:0:0,-39.1339,-415.067	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.444	0/0:155:155,0:155:5498:0:0:0,-46.6596,-494.901	0/0:146:146,0:146:5188:0:0:0,-43.9504,-467.062	0/1:44:23,21:23:824:21:729:-52.1963,0,-61.238	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.04	0/1:50:40,10:40:1414:10:356:-17.2289,0,-112.504	0/1:124:63,61:63:2214:61:2159:-156.524,0,-162.195	0/1:16:9,7:9:324:7:252:-18.1478,0,-24.6894	0/1:75:36,39:36:1288:39:1361:-99.8128,0,-93.6463	0/0:63:62,1:62:2216:1:36:0,-15.3666,-196.106	0/1:41:18,23:18:635:23:808:-60.0979,0,-44.7049	0/1:78:42,36:42:1512:36:1253:-88.8771,0,-112.894	0/1:62:18,43:18:648:43:1514:-117.283,0,-39.9297	0/0:283:283,0:283:10060:0:0:0,-85.1915,-905.306	0/0:93:91,2:91:3226:2:72:0,-21.1815,-283.749
chr06	33610001	.	G	T	61308.6	PASS	AB=0.484395;ABP=6.26327;AC=144;AF=0.774194;AN=186;AO=2861;CIGAR=1X;DP=3663;DPB=3663;DPRA=0;EPP=6198.23;EPPR=1686.29;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.9759;MQMR=59.8986;NS=93;NUMALT=1;ODDS=0.377908;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102203;QR=28538;RO=799;RPL=2856;RPP=6172.24;RPPR=1677.75;RPR=5;RUN=1;SAF=2858;SAP=6189.56;SAR=3;SRF=798;SRP=1729.34;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:12,24:12:432:24:860:-66.8848,0,-28.3841	0/1:34:19,15:19:684:15:540:-38.7015,0,-51.6553	0/1:54:34,20:34:1216:20:712:-48.151,0,-93.3611	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:26:1,25:1:36:25:900:-77.7227,-4.22851,0	0/1:59:39,20:39:1396:20:716:-47.0069,0,-108.178	1/1:67:0,67:0:0:67:2376:-214.096,-20.169,0	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3029	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:39:0,39:0:0:39:1395:-125.848,-11.7402,0	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3053	0/1:39:17,22:17:612:22:788:-59.5046,0,-43.6733	1/1:22:0,22:0:0:22:755:-68.2422,-6.62266,0	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:14:10,4:10:352:4:144:-9.0992,0,-27.8038	0/1:79:36,43:36:1280:43:1538:-114.932,0,-91.6769	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:64:42,22:42:1491:22:788:-51.9789,0,-115.218	1/1:51:0,51:0:0:51:1823:-164.35,-15.3525,0	0/1:52:20,32:20:716:32:1152:-88.3366,0,-49.1142	1/1:92:0,92:0:0:92:3275:-294.97,-27.6948,0	0/1:120:61,59:61:2188:59:2120:-154.945,0,-161.062	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:80:55,25:55:1972:25:893:-56.6071,0,-153.672	0/1:51:21,30:21:752:30:1067:-80.9887,0,-52.6491	0/1:57:31,26:31:1112:26:936:-67.4008,0,-83.2326	1/1:2:0,2:0:0:2:66:-6.26795,-0.60206,0	1/1:19:0,19:0:0:19:669:-60.5339,-5.71957,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:8:0,8:0:0:8:277:-25.2651,-2.40824,0	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	0/1:95:48,47:48:1685:47:1692:-123.969,0,-123.334	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:16:10,6:10:348:6:212:-14.6083,0,-26.8387	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:36:12,24:12:432:24:860:-66.8848,0,-28.3841	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:84:47,37:47:1688:37:1328:-94.5357,0,-126.916	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	0/1:35:22,13:22:783:13:468:-31.9236,0,-60.2569	1/1:53:0,53:0:0:53:1883:-169.748,-15.9546,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:35:18,17:18:640:17:604:-44.1546,0,-47.3933	1/1:96:0,95:0:0:95:3404:-306.215,-28.5979,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/1:5:2,3:2:72:3:97:-7.54484,0,-5.33157	1/1:57:0,56:0:0:56:1960:-176.311,-16.8577,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:32:12,20:12:432:20:696:-53.3273,0,-29.5882	1/1:56:0,55:0:0:55:1980:-178.115,-16.5567,0	.:.:.:.:.:.:.:.	1/1:65:0,65:0:0:65:2320:-209.061,-19.567,0	1/1:82:3,79:3:108:79:2828:-244.681,-14.6093,0	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2689	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	1/1:66:0,66:0:0:66:2341:-210.947,-19.868,0	1/1:64:1,63:1:36:63:2256:-199.705,-15.6676,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:38:0,38:0:0:38:1360:-122.7,-11.4391,0	0/1:8:2,6:2:72:6:205:-16.3754,0,-4.42848	1/1:102:0,102:0:0:102:3652:-328.884,-30.7051,0	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	1/1:104:0,104:0:0:104:3729:-335.802,-31.3071,0	1/1:81:0,81:0:0:81:2883:-259.706,-24.3834,0	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:33:1,32:1:36:32:1152:-100.392,-6.33572,0	1/1:33:0,33:0:0:33:1157:-104.434,-9.93399,0	1/1:90:0,90:0:0:90:3205:-288.665,-27.0927,0	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:31:17,14:17:595:14:495:-35.5511,0,-44.5385	0/1:52:29,23:29:1032:23:828:-59.1906,0,-77.5399	0/1:6:2,4:2:64:4:144:-11.5074,0,-4.26668	0/1:33:16,17:16:576:17:612:-45.4794,0,-42.241	1/1:34:0,34:0:0:34:1207:-108.935,-10.235,0	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/1:37:11,26:11:392:26:928:-72.7001,0,-24.4819	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0
chr06	33665821	.	AC	AT,TT	311133	PASS	AB=0.59488,0.404143;ABP=403.118,411.402;AC=144,44;AF=0.765957,0.234043;AN=188;AO=9814,2085;CIGAR=1M1X,2X;DP=11919;DPB=11931;DPRA=0,0.939611;EPP=21253.1,4504.51;EPPR=18.2106;GTI=3;LEN=1,2;MEANALT=1.67021,2.09804;MQM=59.9657,59.5007;MQMR=60;NS=94;NUMALT=2;ODDS=4.16512;PAIRED=0,0;PAIREDR=0;PAO=9.5,10.5;PQA=336,372;PQR=0;PRO=0;QA=347521,73120;QR=243;RO=7;RPL=6081,2082;RPP=1222.85,4504.51;RPPR=3.32051;RPR=3733,3;RUN=1,1;SAF=6086,2085;SAP=1233.27,4530.53;SAR=3728,0;SRF=4;SRP=3.32051;SRR=3;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,30,14:0:0:30,14:1063,491:-126.905,-40.3064,-31.2755,-86.9499,0,-82.7355	1/2:129:0,54,74:0:0:54,74:1910,2593:-366.512,-210.946,-194.69,-155.558,0,-133.282	1/2:131:0,51,80:0:0:51,80:1827,2799:-376.271,-227.268,-211.915,-149.299,0,-125.216	1/1:289:0,289,0:0:0:289,0:10122,0:-910.916,-86.9977,0,-910.916,-86.9977,-910.916	1/1:76:0,75,1:0:0:75,1:2652,36:-238.566,-22.5773,0,-235.628,-19.28,-235.327	1/1:55:0,55,0:0:0:55,0:1968,0:-177.277,-16.5567,0,-177.277,-16.5567,-177.277	1/1:217:1,216,0:1:36:216,0:7574,0:-678.116,-61.7252,0,-678.417,-65.0225,-681.355	1/2:81:0,37,44:0:0:37,44:1313,1559:-234.196,-127.22,-116.082,-107.214,0,-93.9691	1/1:91:0,90,1:0:0:90,1:3212,25:-288.929,-27.0927,0,-286.982,-24.8946,-286.681	1/2:127:0,77,50:0:0:77,50:2699,1751:-362.379,-142.756,-119.577,-219.915,0,-204.864	1/2:204:0,129,75:0:0:129,75:4591,2657:-590.949,-216.788,-177.955,-374.515,0,-351.938	1/1:129:0,129,0:0:0:129,0:4609,0:-414.91,-38.8329,0,-414.91,-38.8329,-414.91	1/1:114:0,114,0:0:0:114,0:4091,0:-368.354,-34.3174,0,-368.354,-34.3174,-368.354	1/2:238:0,145,92:0:0:145,92:5183,3184:-681.271,-258.661,-215.011,-422.601,0,-394.906	1/2:93:0,51,42:0:0:51,42:1820,1483:-269.486,-121.112,-105.759,-148.729,0,-136.085	1/1:121:0,121,0:0:0:121,0:4311,0:-388.168,-36.4246,0,-388.168,-36.4246,-388.168	1/1:130:0,130,0:0:0:130,0:4664,0:-419.92,-39.1339,0,-419.92,-39.1339,-419.92	1/1:97:0,97,0:0:0:97,0:3484,0:-313.589,-29.1999,0,-313.589,-29.1999,-313.589	1/2:92:0,46,46:0:0:46,46:1637,1644:-267.642,-134.257,-120.409,-133.683,0,-119.835	1/2:216:0,138,78:0:0:138,78:4919,2749:-625.13,-224.163,-182.621,-401.321,0,-377.84	1/1:246:0,246,0:0:0:246,0:8687,0:-781.83,-74.0534,0,-781.83,-74.0534,-781.83	1/1:102:0,102,0:0:0:102,0:3600,0:-324.21,-30.7051,0,-324.21,-30.7051,-324.21	1/2:93:0,59,34:0:0:59,34:2035,1196:-263.007,-97.703,-79.9423,-165.653,0,-155.418	1/1:188:0,187,0:0:0:187,0:6665,0:-599.59,-56.2926,0,-599.59,-56.2926,-599.59	1/2:87:0,51,36:0:0:51,36:1828,1242:-250.324,-101.234,-85.8816,-149.44,0,-138.603	1/1:281:4,274,3:4:135:274,3:9671,101:-857.875,-71.5401,0,-850.895,-74.2991,-860.934	1/2:226:0,143,83:0:0:143,83:5032,2919:-647.547,-237.935,-194.888,-409.964,0,-384.978	1/2:70:0,42,28:0:0:42,28:1482,984:-201.111,-80.4332,-67.7899,-121.03,0,-112.601	1/2:233:0,162,71:0:0:162,71:5753,2485:-671.244,-202.525,-153.759,-469.07,0,-447.697	1/2:111:0,76,35:0:0:76,35:2671,1207:-315.788,-98.3779,-75.4996,-217.757,0,-207.221	1/2:155:0,97,58:0:0:97,58:3414,2043:-444.596,-166.673,-137.473,-278.274,0,-260.815	1/1:10:0,10,0:0:0:10,0:351,0:-31.9267,-3.0103,0,-31.9267,-3.0103,-31.9267	1/1:32:0,32,0:0:0:32,0:1144,0:-103.27,-9.63296,0,-103.27,-9.63296,-103.27	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/2:268:0,184,84:0:0:184,84:6470,2954:-767.414,-240.766,-185.377,-526.999,0,-501.712	1/1:163:0,163,0:0:0:163,0:5746,0:-517.261,-49.0679,0,-517.261,-49.0679,-517.261	1/2:114:0,67,47:0:0:67,47:2408,1655:-331.347,-134.895,-114.725,-196.807,0,-182.659	1/2:2:0,1,1:0:0:1,1:32,36:-5.85565,-3.29724,-2.99621,-2.89828,0,-2.59725	1/2:159:0,95,64:0:0:95,64:3365,2245:-456.903,-182.786,-154.188,-274.469,0,-255.203	1/1:96:0,96,0:0:0:96,0:3411,0:-307.206,-28.8989,0,-307.206,-28.8989,-307.206	1/2:157:0,95,62:0:0:95,62:3379,2204:-455.32,-179.947,-151.349,-275.728,0,-257.064	1/2:99:0,66,33:0:0:66,33:2318,1140:-281.586,-92.9392,-73.0712,-188.994,0,-179.06	1/1:141:0,141,0:0:0:141,0:4920,0:-442.743,-42.4452,0,-442.743,-42.4452,-442.743	1/1:81:0,80,0:0:0:80,0:2844,0:-255.946,-24.0824,0,-255.946,-24.0824,-255.946	1/2:74:0,46,28:0:0:46,28:1653,973:-214.309,-79.4495,-65.6021,-135.211,0,-126.782	1/1:196:0,196,0:0:0:196,0:6914,0:-622.329,-59.0019,0,-622.329,-59.0019,-622.329	1/1:122:0,122,0:0:0:122,0:4321,0:-389.069,-36.7257,0,-389.069,-36.7257,-389.069	1/2:121:0,81,40:0:0:81,40:2848,1436:-349.24,-117.493,-93.1094,-232.103,0,-220.062	1/1:174:0,174,0:0:0:174,0:6131,0:-551.893,-52.3792,0,-551.893,-52.3792,-551.893	1/2:8:0,3,5:0:0:3,5:104,180:-23.4927,-15.0445,-14.1414,-8.79971,0,-7.29456	1/1:150:0,149,1:0:0:149,1:5352,28:-481.41,-44.8535,0,-479.192,-42.3548,-478.891	1/2:57:0,37,20:0:0:37,20:1292,711:-163.38,-58.2932,-47.1551,-105.44,0,-99.4195	1/2:19:0,12,7:0:0:12,7:417,250:-54.6257,-20.7312,-17.1188,-34.2479,0,-32.1406	1/1:195:0,195,0:0:0:195,0:6940,0:-624.67,-58.7009,0,-624.67,-5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chr06	33685493	.	AGCTA	GGCTG,GGCTA	387379	PASS	AB=0.489455,0.503835;ABP=10.063,3.94289;AC=144,44;AF=0.765957,0.234043;AN=188;AO=14318,3715;CIGAR=1X3M1X,1X4M;DP=18144;DPB=18144.2;DPRA=0,1.28454;EPP=31042.1,8035.32;EPPR=5.18177;GTI=1;LEN=5,1;MEANALT=2.64894,3.08621;MQM=59.7475,59.9731;MQMR=60;NS=94;NUMALT=2;ODDS=2.64215;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=32,0;PQR=0;PRO=0;QA=504216,132737;QR=36;RO=1;RPL=5,4;RPP=31050.7,8035.32;RPPR=5.18177;RPR=14313,3711;RUN=1,1;SAF=14317,3715;SAP=31085.5,8070.03;SAR=1,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:119:0,74,45:0:0:74,45:2579,1590:-339.279,-129.84,-107.564,-209.79,0,-196.243	1/2:228:0,106,120:0:0:106,120:3775,4301:-658.444,-350.781,-318.872,-307.66,0,-271.537	1/2:187:0,77,110:0:0:77,110:2710,3921:-540.577,-319.969,-296.79,-220.962,0,-187.848	1/1:392:0,389,0:0:0:389,0:13662,0:-1229,-117.101,0,-1229,-117.101,-1229	1/1:228:0,225,1:0:0:225,1:7940,36:-714.279,-67.7318,0,-711.342,-64.7794,-711.041	1/1:282:0,281,1:0:0:281,1:9897,36:-890.079,-84.5894,0,-887.142,-81.2922,-886.841	1/1:286:0,286,0:0:0:286,0:10106,0:-909.461,-86.0946,0,-909.461,-86.0946,-909.461	1/2:356:0,146,205:0:0:146,205:5139,7296:-1013.03,-594.684,-550.734,-418.408,0,-356.697	1/1:265:0,263,0:0:0:263,0:9216,0:-829.076,-79.1709,0,-829.076,-79.1709,-829.076	1/2:166:0,82,81:0:0:82,81:2896,2904:-472.744,-236.91,-212.226,-235.887,0,-211.503	1/2:44:0,24,20:0:0:24,20:853,720:-128.616,-59.1082,-51.8835,-69.8656,0,-63.845	1/1:75:0,74,0:0:0:74,0:2631,0:-236.672,-22.2762,0,-236.672,-22.2762,-236.672	1/1:66:0,66,0:0:0:66,0:2346,0:-211.395,-19.868,0,-211.395,-19.868,-211.395	1/2:76:0,35,41:0:0:35,41:1221,1453:-218.022,-118.722,-108.186,-99.6514,0,-87.3092	1/2:84:0,46,38:0:0:46,38:1638,1368:-245.485,-111.982,-98.1343,-133.861,0,-122.422	1/1:52:0,52,0:0:0:52,0:1852,0:-166.88,-15.6536,0,-166.88,-15.6536,-166.88	1/1:77:0,77,0:0:0:77,0:2690,0:-242.259,-23.1793,0,-242.259,-23.1793,-242.259	1/1:87:0,87,0:0:0:87,0:3092,0:-278.396,-26.1896,0,-278.396,-26.1896,-278.396	1/2:34:0,11,23:0:0:11,23:393,820:-99.2365,-67.1973,-63.886,-32.3961,0,-25.4724	1/2:325:0,128,196:0:0:128,196:4540,7021:-942.49,-572.608,-534.076,-369.898,0,-310.896	1/1:290:0,286,4:0:0:286,4:10043,144:-903.416,-86.0946,0,-891.666,-73.9851,-890.462	1/1:366:0,363,1:0:0:363,1:12795,36:-1150.86,-109.274,0,-1147.92,-106.328,-1147.62	1/2:363:0,158,203:0:0:158,203:5538,7281:-1044.46,-593.868,-546.305,-450.582,0,-389.473	1/1:370:0,359,8:0:0:359,8:12713,288:-1143.6,-108.07,0,-1120.1,-84.5629,-1117.7	1/2:168:0,101,63:0:0:101,63:3523,2248:-469.825,-183.309,-152.905,-286.56,0,-267.595	1/1:771:0,762,4:0:0:762,4:26784,144:-2409.26,-229.385,0,-2397.51,-217.624,-2396.3	1/2:378:0,170,205:0:0:170,205:6015,7329:-1087.49,-597.598,-546.423,-489.911,0,-428.2	1/2:42:0,26,16:0:0:26,16:923,576:-122.561,-47.3585,-39.5317,-75.5603,0,-70.7439	1/2:480:0,254,223:0:0:254,223:9009,7936:-1380.68,-646.783,-570.322,-733.907,0,-666.777	1/2:357:0,201,154:0:0:201,154:6987,5512:-1017.4,-449.496,-388.989,-567.907,0,-521.548	1/2:346:0,185,159:0:0:185,159:6513,5678:-993.084,-462.913,-407.223,-530.165,0,-482.301	1/1:21:0,21,0:0:0:21,0:748,0:-67.6454,-6.32163,0,-67.6454,-6.32163,-67.6454	1/1:38:0,37,0:0:0:37,0:1308,0:-117.652,-11.1381,0,-117.652,-11.1381,-117.652	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:16:0,15,0:0:0:15,0:525,0:-47.1673,-4.51545,0,-47.1673,-4.51545,-47.1673	1/1:15:0,15,0:0:0:15,0:521,0:-47.218,-4.51545,0,-47.218,-4.51545,-47.218	1/2:242:0,120,121:0:0:120,121:4253,4295:-696.334,-349.866,-313.743,-346.462,0,-310.038	1/1:460:0,458,1:0:0:458,1:15973,36:-1436.83,-137.872,0,-1433.9,-134.904,-1433.59	1/2:50:0,28,21:0:0:28,21:980,748:-140.68,-60.964,-52.5352,-79.7095,0,-73.3879	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/2:316:0,150,161:0:0:150,161:5323,5777:-904.91,-471.254,-426.1,-433.691,0,-385.225	1/1:34:0,34,0:0:0:34,0:1207,0:-108.927,-10.235,0,-108.927,-10.235,-108.927	1/2:424:0,194,226:0:0:194,226:6839,8101:-1217.4,-660.711,-602.311,-556.681,0,-488.648	1/2:133:0,66,67:0:0:66,67:2330,2408:-386.449,-196.807,-176.939,-189.998,0,-169.829	1/1:59:0,59,0:0:0:59,0:2097,0:-188.925,-17.7608,0,-188.925,-17.7608,-188.925	1/1:258:0,256,0:0:0:256,0:9047,0:-813.798,-77.0637,0,-813.798,-77.0637,-813.798	1/2:242:0,102,138:0:0:102,138:3588,4892:-690.631,-398.572,-367.867,-292.096,0,-250.554	1/1:467:0,461,3:0:0:461,3:16214,108:-1458.06,-138.775,0,-1449.25,-129.943,-1448.35	1/1:304:0,300,0:0:0:300,0:10552,0:-949.225,-90.309,0,-949.225,-90.309,-949.225	1/2:285:0,146,139:0:0:146,139:5160,4985:-827.183,-406.952,-363.002,-420.587,0,-378.744	1/1:445:0,443,0:0:0:443,0:15523,0:-1396.34,-133.356,0,-1396.34,-133.356,-1396.34	1/2:14:0,6,8:0:0:6,8:208,288:-40.7593,-23.8592,-22.053,-17.2523,0,-14.8441	1/1:232:0,230,0:0:0:230,0:8086,0:-727.413,-69.2369,0,-727.413,-69.2369,-727.413	1/2:90:0,45,44:0:0:45,44:1574,1565:-255.514,-127.535,-113.988,-127.972,0,-114.727	1/2:65:0,37,28:0:0:37,28:1293,1008:-187.784,-82.6075,-71.4694,-105.532,0,-97.1027	1/1:16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chr06	33685646	.	C	T	28283.2	PASS	AB=0.499865;ABP=3.01088;AC=43;AF=0.228723;AN=188;AO=1870;CIGAR=1X;DP=8088;DPB=8088;DPRA=1.12209;EPP=4054.98;EPPR=13470.5;GTI=0;LEN=1;MEANALT=1.06;MQM=39.2155;MQMR=43.0219;NS=94;NUMALT=1;ODDS=0.938279;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66997;QR=221791;RO=6210;RPL=1869;RPP=4054.98;RPPR=13470.5;RPR=1;RUN=1;SAF=0;SAP=4063.66;SAR=1870;SRF=0;SRP=13487.9;SRR=6210;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:27,32:27:951:32:1152:-79.308,0,-63.3615	0/1:33:14,19:14:500:19:684:-47.2184,0,-33.6493	0/1:157:75,82:75:2683:82:2948:-198.522,0,-182.742	0/0:166:166,0:166:5919:0:0:0,-49.971,-522.678	0/0:63:60,3:60:2152:3:108:0,-9.3788,-178.45	0/0:53:53,0:53:1908:0:0:0,-15.9546,-164.159	0/0:66:65,1:65:2320:1:36:0,-16.3873,-201.262	0/1:184:77,106:77:2751:106:3785:-260.383,0,-182.009	0/0:85:85,0:85:3027:0:0:0,-25.5875,-260.825	0/1:65:30,35:30:1067:35:1260:-89.151,0,-74.7144	0/1:60:29,31:29:1040:31:1112:-78.4887,0,-73.3816	0/0:104:104,0:104:3702:0:0:0,-31.3071,-318.591	0/0:79:79,0:79:2816:0:0:0,-23.7814,-244.077	0/1:73:32,41:32:1152:41:1472:-103.356,0,-79.1517	0/1:55:32,23:32:1148:23:828:-55.6259,0,-85.6201	0/0:84:84,0:84:2993:0:0:0,-25.2865,-261.633	0/0:24:24,0:24:851:0:0:0,-7.22472,-74.1025	0/0:31:31,0:31:1091:0:0:0,-9.33193,-94.8496	0/1:22:10,12:10:356:12:432:-29.7595,0,-23.97	0/1:147:58,89:58:2073:89:3200:-232.982,0,-139.15	0/0:127:127,0:127:4521:0:0:0,-38.2308,-395.354	0/0:103:103,0:103:3679:0:0:0,-31.0061,-326.989	0/1:119:63,56:63:2252:56:2012:-138.743,0,-164.131	0/0:29:29,0:29:1032:0:0:0,-8.72987,-90.2505	0/1:103:48,55:48:1720:55:1980:-137.161,0,-119.684	0/0:209:208,1:208:7438:1:36:0,-59.3943,-657.435	0/1:208:112,95:112:3992:95:3400:-227.787,0,-284.762	0/1:38:20,18:20:716:18:648:-44.3656,0,-51.3632	0/1:193:91,102:91:3247:102:3664:-262.995,0,-229.044	0/1:140:81,59:81:2888:59:2104:-137.702,0,-210.18	0/1:107:56,51:56:1991:51:1824:-125.295,0,-143.672	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.1794	0/0:28:28,0:28:1004:0:0:0,-8.42884,-88.2804	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.8907	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.3268	0/0:41:41,0:41:1468:0:0:0,-12.3422,-126.685	0/1:169:96,73:96:3428:73:2620:-178.338,0,-254.296	0/0:121:121,0:121:4312:0:0:0,-36.4246,-376.658	0/1:50:25,25:25:883:25:892:-58.3599,0,-61.3402	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.80756	0/1:112:68,44:68:2415:44:1579:-100.993,0,-176.632	0/0:37:35,2:35:1251:2:72:0,-5.33449,-104.177	0/1:130:51,79:51:1820:79:2832:-201.362,0,-120.607	0/1:40:18,22:18:648:22:792:-57.173,0,-45.7581	0/0:53:53,0:53:1904:0:0:0,-15.9546,-168.861	0/0:118:118,0:118:4224:0:0:0,-35.5215,-376.278	0/1:107:45,62:45:1620:62:2221:-153.259,0,-107.991	0/0:122:121,1:121:4332:1:32:0,-33.5263,-379.303	0/0:109:109,0:109:3891:0:0:0,-32.8123,-344.066	0/1:113:49,64:49:1743:64:2292:-165.419,0,-120.806	0/0:84:82,0:82:2923:0:0:0,-24.6845,-258.912	0/1:15:9,5:9:320:5:180:-11.256,0,-23.7102	0/0:114:113,0:113:4032:0:0:0,-34.0164,-346.208	0/1:109:77,32:77:2746:32:1152:-67.6373,0,-210.5	0/1:13:5,8:5:180:8:288:-20.5135,0,-11.9773	0/0:102:102,0:102:3652:0:0:0,-30.7051,-316.93	0/0:63:62,0:62:2207:0:0:0,-18.6639,-195.367	0/1:5:4,1:4:144:1:36:-2.01586,0,-11.6921	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.6681	0/1:110:54,56:54:1940:56:2012:-138.114,0,-135.496	0/0:130:130,0:130:4652:0:0:0,-39.1339,-408.681	0/1:17:7,10:7:252:10:360:-26.5568,0,-17.593	0/0:133:133,0:133:4752:0:0:0,-40.037,-421.694	0/0:173:173,0:173:6200:0:0:0,-52.0782,-549.33	0/1:97:60,37:60:2152:37:1332:-84.4488,0,-159.024	0/1:88:47,41:47:1688:41:1461:-100.229,0,-122.971	0/0:75:75,0:75:2675:0:0:0,-22.5772,-235.701	0/0:179:176,3:176:6292:3:108:0,-44.1384,-546.987	0/0:30:30,0:30:1076:0:0:0,-9.0309,-94.584	0/0:81:81,0:81:2896:0:0:0,-24.3834,-248.437	0/0:58:58,0:58:2076:0:0:0,-17.4597,-184.827	0/1:23:13,10:13:464:10:345:-23.1002,0,-34.6132	0/0:171:170,0:170:6071:0:0:0,-51.1751,-521.794	0/1:61:35,26:35:1236:26:936:-58.8777,0,-88.3502	0/0:157:157,0:157:5596:0:0:0,-47.2617,-488.882	0/0:92:92,0:92:3288:0:0:0,-27.6948,-289.943	0/1:184:87,97:87:3087:97:3437:-230.54,0,-204.703	0/0:114:114,0:114:4088:0:0:0,-34.3174,-352.534	0/0:22:22,0:22:788:0:0:0,-6.62266,-68.5865	0/0:50:50,0:50:1788:0:0:0,-15.0515,-156.912	0/0:142:140,2:140:5003:2:72:0,-36.8098,-423.911	0/0:145:145,0:145:5192:0:0:0,-43.6493,-459.725	0/1:43:18,25:18:648:25:892:-64.9456,0,-44.855	0/0:69:69,0:69:2454:0:0:0,-20.7711,-217.636	0/1:44:24,20:24:848:20:704:-48.528,0,-62.4092	0/1:103:46,57:46:1652:57:2033:-145.271,0,-115.556	0/1:16:4,12:4:144:12:432:-31.4749,0,-7.96514	0/1:58:31,27:31:1104:27:972:-62.4074,0,-78.3055	0/0:69:69,0:69:2458:0:0:0,-20.7711,-211.747	0/1:56:27,29:27:964:29:1032:-70.3818,0,-67.9484	0/1:127:77,50:77:2747:50:1792:-113.685,0,-200.883	0/1:62:23,39:23:815:39:1404:-101.318,0,-53.6281	0/0:124:124,0:124:4444:0:0:0,-37.3277,-391.923	0/0:104:104,0:104:3698:0:0:0,-31.3071,-327.092
chr06	33685664	.	T	C	124527	PASS	AB=0.494592;ABP=3.94982;AC=145;AF=0.771277;AN=188;AO=6126;CIGAR=1X;DP=8009;DPB=8009;DPRA=0;EPP=13305.5;EPPR=4087.55;GTI=0;LEN=1;MEANALT=1.02128;MQM=42.8932;MQMR=39.2371;NS=94;NUMALT=1;ODDS=1.78148;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219090;QR=67305;RO=1881;RPL=6126;RPP=13305.5;RPPR=4087.55;RPR=0;RUN=1;SAF=0;SAP=13305.5;SAR=6126;SRF=0;SRP=4087.55;SRR=1881;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:32,25:32:1148:25:888:-58.4841,0,-79.5497	0/1:33:19,14:19:684:14:489:-32.7044,0,-47.2184	0/1:157:82,75:82:2944:75:2692:-183.28,0,-198.283	1/1:163:0,163:0:0:163:5840:-515.114,-49.0679,0	1/1:60:3,57:3:108:57:2033:-168.035,-8.47572,0	1/1:56:0,56:0:0:56:2016:-173.51,-16.8577,0	1/1:64:1,63:1:36:63:2264:-196.151,-15.7852,0	0/1:184:106,78:106:3762:78:2788:-185.01,0,-258.947	1/1:84:0,84:0:0:84:2982:-257.86,-25.2865,0	0/1:65:34,31:34:1220:31:1104:-77.9947,0,-86.2402	0/1:58:32,26:32:1152:26:932:-65.3293,0,-82.1323	1/1:100:0,100:0:0:100:3584:-307.61,-30.103,0	1/1:75:0,75:0:0:75:2692:-232.719,-22.5773,0	0/1:71:41,30:41:1472:30:1076:-72.911,0,-103.958	0/1:56:24,32:24:860:32:1152:-85.653,0,-58.1572	1/1:81:0,81:0:0:81:2912:-254.4,-24.3834,0	1/1:23:1,22:1:36:22:792:-65.0446,-3.34492,0	1/1:26:0,26:0:0:26:936:-80.8713,-7.82678,0	0/1:22:12,10:12:432:10:360:-24.2597,0,-29.7595	0/1:147:92,55:92:3281:55:1980:-130.835,0,-240.359	1/1:126:0,126:0:0:126:4467:-390.603,-37.9298,0	1/1:106:0,106:0:0:106:3778:-335.782,-31.9092,0	0/1:119:57,62:57:2048:62:2220:-161.066,0,-141.255	1/1:28:0,28:0:0:28:1008:-87.8649,-8.42884,0	0/1:103:54,49:54:1928:49:1764:-123.274,0,-133.321	1/1:209:1,208:1:36:208:7445:-658.246,-59.3943,0	0/1:206:95,111:95:3365:111:3952:-282.394,0,-225.673	0/1:38:18,20:18:648:20:720:-51.6746,0,-44.3656	0/1:194:103,91:103:3664:91:3257:-229.425,0,-262.99	0/1:137:59,78:59:2112:78:2800:-203.069,0,-138.792	0/1:105:50,55:50:1792:55:1965:-141.589,0,-123.157	1/1:12:0,12:0:0:12:432:-38.1794,-3.61236,0	1/1:27:0,27:0:0:27:960:-84.4969,-8.12781,0	1/1:5:0,5:0:0:5:180:-15.8907,-1.50515,0	1/1:9:0,9:0:0:9:324:-28.3268,-2.70927,0	1/1:40:0,40:0:0:40:1417:-122.676,-12.0412,0	0/1:167:74,93:74:2648:93:3332:-246.15,0,-181.173	1/1:122:0,122:0:0:122:4338:-377.776,-36.7257,0	0/1:50:25,25:25:892:25:900:-62.553,0,-58.3599	1/1:3:0,3:0:0:3:104:-9.48643,-0.90309,0	0/1:111:44,67:44:1572:67:2377:-173.496,0,-100.701	1/1:37:0,37:0:0:37:1324:-115.394,-11.1381,0	0/1:131:80,51:80:2868:51:1809:-119.227,0,-203.812	0/1:41:22,19:22:792:19:684:-48.4249,0,-56.872	1/1:49:0,49:0:0:49:1749:-155.062,-14.7505,0	1/1:116:0,116:0:0:116:4152:-369.901,-34.9195,0	0/1:108:64,44:64:2300:44:1569:-103.224,0,-158.594	1/1:119:1,118:1:36:118:4228:-369.673,-32.2243,0	1/1:110:0,110:0:0:110:3913:-346.124,-33.1133,0	0/1:113:65,48:65:2313:48:1720:-118.674,0,-167.385	1/1:79:0,79:0:0:79:2836:-251.276,-23.7814,0	0/1:15:6,9:6:216:9:324:-24.0655,0,-14.4465	1/1:112:0,112:0:0:112:3990:-342.367,-33.7154,0	0/1:108:32,76:32:1144:76:2713:-207.727,0,-67.2986	0/1:14:8,6:8:288:6:216:-14.7853,0,-20.2124	1/1:101:0,100:0:0:100:3558:-309.216,-30.103,0	1/1:64:0,64:0:0:64:2284:-202.431,-19.2659,0	0/1:5:1,4:1:36:4:144:-11.6921,0,-2.01586	1/1:11:0,11:0:0:11:392:-35.3224,-3.31133,0	0/1:109:54,55:54:1932:55:1960:-137.643,0,-131.989	1/1:125:0,125:0:0:125:4500:-396.425,-37.6288,0	0/1:17:10,7:10:356:7:252:-17.593,0,-26.2545	1/1:128:0,128:0:0:128:4570:-405.85,-38.5318,0	1/1:176:0,176:0:0:176:6286:-556.297,-52.9813,0	0/1:98:38,60:38:1360:60:2133:-157.186,0,-86.6828	0/1:87:41,46:41:1476:46:1648:-119.791,0,-101.779	1/1:74:0,73:0:0:73:2624:-230.648,-21.9752,0	1/1:180:3,177:3:108:177:6317:-549.242,-44.4395,0	1/1:28:0,28:0:0:28:1008:-88.6183,-8.42884,0	1/1:80:0,80:0:0:80:2872:-246.103,-24.0824,0	1/1:58:0,58:0:0:58:2071:-184.384,-17.4597,0	0/1:22:10,12:10:360:12:432:-32.0562,0,-24.6119	1/1:172:0,172:0:0:172:6164:-529.391,-51.7772,0	0/1:61:26,35:26:928:35:1229:-87.5569,0,-58.4367	1/1:156:0,156:0:0:156:5578:-486.611,-46.9607,0	1/1:88:0,88:0:0:88:3133:-276.224,-26.4906,0	0/1:186:99,87:99:3544:87:3093:-204.654,0,-238.074	1/1:114:0,114:0:0:114:4081:-351.468,-34.3174,0	1/1:21:0,21:0:0:21:756:-65.6353,-6.32163,0	1/1:49:0,49:0:0:49:1756:-154.07,-14.7505,0	1/1:142:1,141:1:36:141:5026:-428.504,-39.4001,0	1/1:144:1,143:1:36:143:5124:-449.089,-39.7569,0	0/1:45:27,18:27:968:18:648:-44.253,0,-70.9092	1/1:69:0,69:0:0:69:2484:-220.108,-20.7711,0	0/1:39:18,21:18:648:21:756:-55.6402,0,-44.9952	0/1:103:58,45:58:2080:45:1620:-112.582,0,-148.093	0/1:16:12,4:12:432:4:144:-7.96514,0,-31.4749	0/1:57:27,30:27:968:30:1080:-76.3601,0,-62.4686	1/1:69:0,69:0:0:69:2480:-213.534,-20.7711,0	0/1:55:28,27:28:1004:27:968:-68.4505,0,-67.9259	0/1:126:51,75:51:1836:75:2692:-196.399,0,-117.613	0/1:62:39,23:39:1400:23:824:-54.4016,0,-101.045	1/1:122:0,122:0:0:122:4380:-386.215,-36.7257,0	1/1:99:0,99:0:0:99:3544:-313.369,-29.802,0
chr06	33772565	.	TGCAA	TGCAG	112896	PASS	AB=0.43039;ABP=165.051;AC=143;AF=0.760638;AN=188;AO=5455;CIGAR=4M1X;DP=7693;DPB=7700.8;DPRA=18.5604;EPP=11848.4;EPPR=4778.08;GTI=5;LEN=1;MEANALT=1.32609;MQM=59.2389;MQMR=59.3156;NS=94;NUMALT=1;ODDS=0.749028;PAIRED=0;PAIREDR=0;PAO=15;PQA=517;PQR=0;PRO=9;QA=194364;QR=78233;RO=2199;RPL=0;RPP=11848.4;RPPR=4778.08;RPR=5455;RUN=1;SAF=5455;SAP=11848.4;SAR=0;SRF=2199;SRP=4778.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:46,16:46:1636:16:571:-32.6956,0,-128.426	0/1:69:49,20:49:1741:20:720:-44.3401,0,-136.166	0/1:111:64,47:64:2270:47:1658:-115.888,0,-170.954	1/1:193:0,192:0:0:192:6800:-611.014,-57.7978,0	1/1:9:0,9:0:0:9:324:-29.4606,-2.70927,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:91:0,91:0:0:91:3221:-289.672,-27.3937,0	0/1:140:83,57:83:2939:57:2052:-142.725,0,-222.527	1/1:99:0,97:0:0:97:3461:-311.081,-29.1999,0	0/1:74:34,40:34:1223:40:1398:-103.786,0,-88.0724	0/1:80:38,42:38:1365:42:1496:-110.654,0,-98.5542	1/1:124:0,123:0:0:123:4367:-392.341,-37.0267,0	1/1:87:0,84:0:0:84:3009:-270.495,-25.2865,0	0/1:105:52,53:52:1860:53:1904:-138.763,0,-136.049	0/1:81:43,36:43:1532:36:1281:-91.3937,0,-113.976	1/1:55:0,55:0:0:55:1972:-177.674,-16.5567,0	1/1:56:0,56:0:0:56:2004:-180.581,-16.8577,0	1/1:42:0,38:0:0:38:1368:-123.084,-11.4391,0	0/1:27:19,8:19:677:8:288:-18.0869,0,-53.0735	0/1:145:81,64:81:2899:64:2300:-163.354,0,-217.409	1/1:155:1,154:1:35:154:5448:-486.71,-43.161,0	1/1:38:0,38:0:0:38:1368:-122.456,-11.4391,0	0/1:93:51,42:51:1779:42:1504:-107.349,0,-132.281	1/1:30:0,30:0:0:30:1080:-97.4995,-9.0309,0	0/1:57:46,11:46:1628:11:392:-18.4613,0,-129.625	1/1:174:0,173:0:0:173:6163:-553.96,-52.0782,0	0/1:195:112,83:112:3954:83:2960:-207.631,0,-297.15	0/1:30:14,16:14:503:16:576:-43.1441,0,-36.5768	0/1:270:121,148:121:4301:148:5289:-394.922,0,-305.993	0/1:66:36,30:36:1283:30:1064:-76.1588,0,-95.9054	0/1:122:55,67:55:1941:67:2382:-177.658,0,-137.938	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:14:0,14:0:0:14:504:-45.6804,-4.21442,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	0/1:209:106,102:106:3780:102:3626:-263.428,0,-277.292	1/1:83:0,83:0:0:83:2931:-263.985,-24.9855,0	0/1:57:29,28:29:1038:28:996:-72.7785,0,-76.5402	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:118:58,60:58:2069:60:2133:-156.63,0,-150.945	1/1:21:0,21:0:0:21:752:-67.9388,-6.32163,0	0/1:135:107,28:107:3793:28:993:-48.9882,0,-300.38	0/1:71:47,24:47:1687:24:849:-55.1683,0,-130.716	1/1:61:0,61:0:0:61:2142:-192.842,-18.3628,0	1/1:51:0,50:0:0:50:1781:-160.301,-15.0515,0	0/1:106:68,38:68:2400:38:1364:-91.1163,0,-184.289	1/1:110:3,106:3:108:106:3785:-330.685,-23.052,0	1/1:73:1,72:1:36:72:2565:-227.415,-18.3769,0	0/1:101:57,44:57:2022:44:1561:-110.342,0,-151.72	1/1:53:0,53:0:0:53:1896:-170.831,-15.9546,0	0/0:3:3,0:3:107:0:0:0,-0.90309,-9.98217	1/1:86:0,86:0:0:86:3092:-277.98,-25.8886,0	0/1:81:53,28:53:1881:28:989:-64.8764,0,-145.039	1/1:6:0,6:0:0:6:216:-19.7858,-1.80618,0	0/1:122:58,64:58:2062:64:2255:-166.303,0,-148.55	1/1:23:0,23:0:0:23:809:-73.0145,-6.92369,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:109:72,37:72:2560:37:1324:-86.6498,0,-197.805	1/1:121:1,118:1:36:118:4218:-375.783,-32.5941,0	0/1:5:4,1:4:143:1:36:-2.09312,0,-11.7163	1/1:152:0,152:0:0:152:5407:-486.257,-45.7566,0	1/1:102:8,94:8:286:94:3352:-275.699,-4.61951,0	0/1:54:16,38:16:569:38:1368:-107.098,0,-35.2641	0/1:71:35,36:35:1250:36:1239:-90.3746,0,-91.4097	1/1:148:0,147:0:0:147:5219:-469.318,-44.2514,0	1/1:89:0,89:0:0:89:3162:-284.464,-26.7917,0	1/1:41:0,41:0:0:41:1476:-133.114,-12.3422,0	1/1:39:0,39:0:0:39:1370:-123.188,-11.7402,0	1/1:51:0,50:0:0:50:1792:-161.157,-15.0515,0	0/1:28:16,11:16:567:11:381:-26.1744,0,-42.8574	1/1:81:0,81:0:0:81:2908:-261.902,-24.3834,0	0/1:69:34,35:34:1217:35:1252:-92.1964,0,-89.0166	1/1:174:0,174:0:0:174:6194:-556.526,-52.3792,0	1/1:159:0,159:0:0:159:5640:-506.3,-47.8638,0	0/1:85:70,14:70:2488:14:500:-19.69,0,-198.411	1/1:113:0,113:0:0:113:4052:-364.337,-34.0164,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:77:0,77:0:0:77:2734:-246.204,-23.1793,0	1/1:74:0,73:0:0:73:2597:-233.625,-21.9752,0	1/1:198:0,197:0:0:197:7042:-633.236,-59.3029,0	0/1:95:55,39:55:1968:39:1400:-97.6461,0,-148.805	1/1:98:0,98:0:0:98:3520:-316.805,-29.5009,0	0/1:56:31,24:31:1110:24:849:-59.8118,0,-83.2949	0/1:195:109,83:109:3906:83:2980:-210.274,0,-292.844	0/1:30:18,12:18:642:12:432:-30.1903,0,-49.0788	0/1:80:46,33:46:1635:33:1180:-82.4735,0,-123.369	1/1:86:0,86:0:0:86:3077:-277.027,-25.8886,0	0/1:48:21,27:21:740:27:949:-71.271,0,-52.4288	0/1:114:62,49:62:2214:49:1745:-123.558,0,-165.684	0/1:83:60,22:60:2137:22:788:-46.1146,0,-167.452	1/1:155:0,153:0:0:153:5442:-489.095,-46.0576,0	1/1:95:0,95:0:0:95:3396:-305.357,-28.5979,0
chr06	33772630	.	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chr06	33785332	.	A	G	45539.5	PASS	AB=0.531043;ABP=44.6688;AC=45;AF=0.239362;AN=188;AO=2660;CIGAR=1X;DP=10836;DPB=10836;DPRA=1.27601;EPP=5779.13;EPPR=17748.3;GTI=1;LEN=1;MEANALT=1.01852;MQM=59.9771;MQMR=59.9998;NS=94;NUMALT=1;ODDS=0.0634046;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94918;QR=292042;RO=8172;RPL=0;RPP=5779.13;RPPR=17748.3;RPR=2660;RUN=1;SAF=0;SAP=5779.13;SAR=2660;SRF=0;SRP=17748.3;SRR=8172;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:12,16:12:432:16:567:-42.9319,0,-30.7924	0/1:217:80,137:80:2831:137:4872:-373.311,0,-189.704	0/1:193:93,99:93:3340:99:3540:-260.649,0,-242.659	0/0:330:329,1:329:11719:1:36:0,-95.7416,-1050.98	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:169:169,0:169:6039:0:0:0,-50.8741,-543.615	0/1:172:78,94:78:2791:94:3358:-250.659,0,-199.653	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:115:54,61:54:1908:61:2192:-162.927,0,-137.377	0/1:79:30,49:30:1061:49:1756:-134.543,0,-72.018	0/0:67:66,1:66:2360:1:36:0,-16.5707,-209.06	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.662	0/1:96:54,42:54:1909:42:1496:-106.033,0,-143.187	0/1:62:25,37:25:896:37:1317:-100.166,0,-62.2965	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.626	0/0:79:79,0:79:2814:0:0:0,-23.7814,-253.499	0/0:67:67,0:67:2399:0:0:0,-20.169,-216.166	0/1:45:24,21:24:847:21:756:-54.8209,0,-63.0024	0/1:349:177,172:177:6300:172:6137:-447.372,0,-462.03	0/0:168:168,0:168:5967:0:0:0,-50.573,-537.137	0/0:88:88,0:88:3138:0:0:0,-26.4906,-282.645	0/1:68:39,29:39:1396:29:1035:-72.993,0,-105.469	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.786	0/1:69:36,33:36:1283:33:1157:-83.6632,0,-95.0016	0/0:386:384,2:384:13748:2:68:0,-109.74,-1230.64	0/1:299:125,174:125:4471:174:6188:-467.009,0,-312.551	0/1:49:23,26:23:815:26:936:-69.809,0,-58.9203	0/1:460:216,244:216:7737:244:8739:-648.005,0,-557.886	0/1:202:103,99:103:3678:99:3535:-257.55,0,-270.414	0/1:132:70,62:70:2496:62:2211:-159.518,0,-185.157	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:1:0,0:0:0:0:0:0,0,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:196:107,89:107:3815:89:3164:-225.982,0,-284.544	0/0:178:177,1:177:6349:1:36:0,-49.9851,-567.899	0/1:91:46,45:46:1634:45:1599:-116.806,0,-119.954	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:169:83,86:83:2988:86:3069:-225.561,0,-218.277	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/1:116:65,51:65:2325:51:1824:-129.522,0,-174.589	0/1:94:44,50:44:1572:50:1788:-132.906,0,-113.475	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:89:89,0:89:3185:0:0:0,-26.7917,-286.872	0/1:155:52,103:52:1868:103:3675:-284.294,0,-121.74	0/0:190:190,0:190:6809:0:0:0,-57.1957,-612.878	0/0:138:138,0:138:4935:0:0:0,-41.5421,-444.297	0/1:193:77,116:77:2751:116:4164:-316.843,0,-189.733	0/0:165:164,1:164:5853:1:36:0,-46.0717,-523.28	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:162:162,0:162:5788:0:0:0,-48.7669,-521.033	0/1:48:22,26:22:779:26:923:-68.9364,0,-55.9826	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:152:81,71:81:2888:71:2525:-181.743,0,-214.398	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.472	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:52:21,31:21:747:31:1108:-84.3774,0,-51.9007	0/0:139:139,0:139:4969:0:0:0,-41.8432,-447.358	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:351:351,0:351:12578:0:0:0,-105.662,-1131.84	0/0:229:227,2:227:8119:2:72:0,-62.0991,-723.887	0/1:68:37,31:37:1332:31:1116:-80.2801,0,-99.7123	0/1:97:54,43:54:1940:43:1517:-107.621,0,-145.676	0/0:217:215,2:215:7691:2:72:0,-58.4868,-685.385	0/0:61:60,1:60:2137:1:36:0,-14.7646,-188.998	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:29:12,17:12:428:17:604:-45.9607,0,-30.1289	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.87	0/1:94:30,64:30:1068:64:2283:-177.435,0,-68.1352	0/0:112:111,1:111:3965:1:36:0,-30.1171,-353.442	0/0:293:293,0:293:10523:0:0:0,-88.2018,-946.979	0/1:84:38,46:38:1347:46:1639:-122.511,0,-96.243	0/0:154:154,0:154:5528:0:0:0,-46.3586,-497.643	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:178:178,0:178:6388:0:0:0,-53.5833,-575.007	0/0:130:130,0:130:4647:0:0:0,-39.1339,-418.392	0/0:327:327,0:327:11645:0:0:0,-98.4368,-1047.92	0/1:113:48,65:48:1707:65:2318:-174.863,0,-119.899	0/0:101:100,0:100:3569:0:0:0,-30.103,-321.057	0/1:112:60,52:60:2152:52:1844:-132.522,0,-160.232	0/1:138:75,63:75:2670:63:2264:-162.48,0,-199.003	0/1:51:25,26:25:896:26:924:-68.1251,0,-65.6078	0/1:62:32,30:32:1144:30:1056:-76.6843,0,-84.6057	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/1:44:12,32:12:428:32:1139:-89.5033,0,-25.6135	0/1:83:42,41:42:1500:41:1476:-108.151,0,-110.309	0/1:76:17,59:17:612:59:2103:-166.66,0,-32.5352	0/0:234:233,0:233:8315:0:0:0,-70.14,-748.089	0/0:130:129,1:129:4598:1:36:0,-35.5356,-410.387
chr06	33785347	.	A	T	46159.8	PASS	AB=0.5298;ABP=41.5774;AC=45;AF=0.239362;AN=188;AO=2665;CIGAR=1X;DP=10905;DPB=10905;DPRA=1.30451;EPP=5651.84;EPPR=17453.4;GTI=1;LEN=1;MEANALT=1.05769;MQM=59.955;MQMR=59.9995;NS=94;NUMALT=1;ODDS=1.06074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94776;QR=295153;RO=8235;RPL=2649;RPP=5651.84;RPPR=17453.4;RPR=16;RUN=1;SAF=0;SAP=5789.98;SAR=2665;SRF=0;SRP=17885.1;SRR=8235;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:12,16:12:432:16:564:-42.6615,0,-30.7924	0/1:215:79,136:79:2816:136:4868:-373.552,0,-188.956	0/1:192:94,98:94:3380:98:3436:-251.654,0,-246.617	0/0:331:331,0:331:11855:0:0:0,-99.6409,-1066.81	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:173:173,0:173:6172:0:0:0,-52.0782,-555.578	0/1:172:77,95:77:2764:95:3376:-252.281,0,-197.224	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:113:53,60:53:1895:60:2113:-156.421,0,-136.811	0/1:76:27,49:27:963:49:1752:-135.086,0,-64.1077	0/0:70:69,1:69:2471:1:36:0,-17.4738,-219.045	0/0:79:79,0:79:2801:0:0:0,-23.7814,-252.327	0/1:95:52,43:52:1845:43:1539:-110.204,0,-137.73	0/1:61:24,37:24:860:37:1305:-99.3866,0,-59.359	0/0:65:65,0:65:2309:0:0:0,-19.5669,-208.069	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:45:24,21:24:864:21:756:-54.8209,0,-64.5362	0/1:356:181,175:181:6508:175:6229:-453.541,0,-478.634	0/0:169:169,0:169:6042:0:0:0,-50.8741,-543.883	0/0:88:87,0:87:3128:0:0:0,-26.1896,-281.385	0/1:71:39,32:39:1404:32:1128:-80.4542,0,-105.286	0/0:113:113,0:113:4038:0:0:0,-34.0164,-363.607	0/1:68:37,31:37:1317:31:1089:-77.8473,0,-98.3598	0/0:386:383,3:383:13722:3:108:0,-106.122,-1224.68	0/1:301:125,176:125:4483:176:6244:-471.448,0,-313.028	0/1:49:23,26:23:819:26:932:-69.4484,0,-59.2811	0/1:466:218,248:218:7824:248:8795:-651.243,0,-563.905	0/1:203:103,99:103:3708:99:3534:-257.102,0,-272.752	0/1:132:70,62:70:2501:62:2216:-159.969,0,-185.605	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:198:109,89:109:3915:89:3188:-227.54,0,-292.937	0/0:178:178,0:178:6375:0:0:0,-53.5833,-573.839	0/1:90:45,45:45:1616:45:1608:-117.917,0,-118.637	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:172:86,86:86:3079:86:3084:-226.009,0,-225.56	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:117:65,52:65:2328:52:1847:-131.289,0,-174.559	0/1:92:44,48:44:1569:48:1720:-127.391,0,-113.805	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/1:158:53,105:53:1904:105:3752:-290.318,0,-124.075	0/0:191:191,0:191:6851:0:0:0,-57.4967,-616.657	0/0:141:141,0:141:5047:0:0:0,-42.4452,-454.375	0/1:192:78,114:78:2786:114:4057:-307.52,0,-193.182	0/0:163:162,1:162:5809:1:36:0,-45.4696,-519.321	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:161:161,0:161:5779:0:0:0,-48.4658,-520.222	0/1:48:23,25:23:824:25:884:-65.4266,0,-60.0339	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:154:80,74:80:2872:74:2618:-189.502,0,-212.358	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:52:22,30:22:792:30:1072:-81.1389,0,-55.9521	0/0:139:139,0:139:5004:0:0:0,-41.8432,-450.504	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:356:355,1:355:12689:1:36:0,-103.568,-1138.23	0/0:236:234,2:234:8394:2:72:0,-64.2064,-748.624	0/1:69:37,32:37:1317:32:1109:-79.3408,0,-98.0588	0/1:98:54,44:54:1944:44:1568:-111.911,0,-145.735	0/0:221:219,2:219:7864:2:72:0,-59.6909,-700.947	0/0:61:60,1:60:2148:1:36:0,-14.7646,-189.989	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:29:13,16:13:464:16:557:-41.7257,0,-33.3676	0/0:112:112,0:112:4032:0:0:0,-33.7154,-363.066	0/1:92:31,61:31:1112:61:2168:-167.692,0,-72.6966	0/0:112:112,0:112:3995:0:0:0,-33.7154,-359.741	0/0:295:295,0:295:10578:0:0:0,-88.8038,-951.929	0/1:84:38,45:38:1364:45:1604:-119.305,0,-97.7154	0/0:154:154,0:154:5528:0:0:0,-46.3586,-497.643	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:180:180,0:180:6459:0:0:0,-54.1854,-581.393	0/0:130:130,0:130:4649:0:0:0,-39.1339,-418.571	0/0:328:328,0:328:11775:0:0:0,-98.7378,-1059.61	0/1:115:48,67:48:1716:67:2380:-179.837,0,-120.107	0/0:102:102,0:102:3655:0:0:0,-30.7051,-329.153	0/1:113:60,53:60:2160:53:1872:-134.737,0,-160.65	0/1:141:77,64:77:2763:64:2288:-163.736,0,-206.465	0/1:50:25,25:25:900:25:896:-65.9089,0,-66.2695	0/1:62:33,29:33:1184:29:1028:-74.1692,0,-88.2045	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	0/1:45:13,32:13:468:32:1135:-88.9022,0,-28.9133	0/1:83:42,41:42:1504:41:1468:-107.431,0,-110.669	0/1:77:18,58:18:633:58:2080:-164.231,0,-34.0574	0/0:238:237,1:237:8520:1:21:0,-69.5465,-764.696	0/0:129:128,0:128:4591:0:0:0,-38.5318,-412.993
chr06	33801638	.	TTGGA	ATGGG,TTGGG	222117	PASS	AB=0.491737,0.498517;ABP=5.80929,3.10047;AC=144,44;AF=0.765957,0.234043;AN=188;AO=8352,2372;CIGAR=1X3M1X,4M1X;DP=10828;DPB=10828;DPRA=29.0968,1.16497;EPP=18139.1,5153.74;EPPR=0;GTI=1;LEN=5,1;MEANALT=2.44086,2.89091;MQM=55.1379,59.7445;MQMR=0;NS=94;NUMALT=2;ODDS=0.283821;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=286776,83990;QR=0;RO=0;RPL=15,1;RPP=18009.1,5145.06;RPPR=0;RPR=8337,2371;RUN=1,1;SAF=15,1;SAP=18009.1,5145.06;SAR=8337,2371;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:98:0,49,48:0:0:49,48:1682,1700:-274.73,-138.475,-123.725,-136.244,0,-121.794	1/2:198:0,101,92:0:0:101,92:3424,3221:-538.386,-261.947,-231.543,-276.47,0,-248.775	1/2:166:0,87,78:0:0:87,78:3004,2785:-470.457,-227.103,-200.914,-243.4,0,-219.919	1/1:209:0,208,1:0:0:208,1:7117,36:-635.25,-62.6142,0,-632.312,-59.317,-632.011	1/1:178:0,172,2:0:0:172,2:5938,72:-530.895,-51.7772,0,-525.02,-45.888,-524.418	1/1:111:0,111,0:0:0:111,0:3836,0:-344.859,-33.4143,0,-344.859,-33.4143,-344.859	1/1:198:0,197,0:0:0:197,0:6724,0:-603.936,-59.3029,0,-603.936,-59.3029,-603.936	1/2:193:0,113,75:0:0:113,75:3928,2643:-533.613,-215.304,-181.287,-318.425,0,-295.848	1/1:169:0,167,0:0:0:167,0:5699,0:-510.814,-50.272,0,-510.814,-50.272,-510.814	1/2:108:0,46,62:0:0:46,62:1581,2207:-308.521,-180.201,-166.353,-128.669,0,-110.005	1/2:43:0,27,16:0:0:27,16:930,557:-121.138,-45.6324,-37.5046,-75.8518,0,-71.0353	1/1:75:0,75,0:0:0:75,0:2560,0:-230.139,-22.5773,0,-230.139,-22.5773,-230.139	1/1:69:0,67,0:0:0:67,0:2321,0:-208.046,-20.169,0,-208.046,-20.169,-208.046	1/2:77:0,42,35:0:0:42,35:1428,1245:-217.374,-101.815,-89.1715,-115.907,0,-105.371	1/2:61:0,34,27:0:0:34,27:1157,955:-171.931,-78.1303,-67.8953,-94.1483,0,-86.0205	1/1:56:0,56,0:0:0:56,0:1890,0:-170.117,-16.8577,0,-170.117,-16.8577,-170.117	1/1:54:0,54,0:0:0:54,0:1857,0:-166.778,-16.2556,0,-166.778,-16.2556,-166.778	1/1:49:0,48,0:0:0:48,0:1666,0:-149.494,-14.4494,0,-149.494,-14.4494,-149.494	1/2:41:0,16,24:0:0:16,24:527,864:-113.009,-70.4982,-65.6817,-42.494,0,-35.2693	1/2:349:0,162,186:0:0:162,186:5524,6667:-991.466,-543.742,-494.975,-447.774,0,-391.783	1/1:184:0,182,0:0:0:182,0:6223,0:-557.039,-54.7875,0,-557.039,-54.7875,-557.039	1/1:129:0,128,0:0:0:128,0:4368,0:-392.675,-38.5318,0,-392.675,-38.5318,-392.675	1/2:119:0,66,51:0:0:66,51:2278,1800:-330.952,-146.636,-126.768,-184.374,0,-169.021	1/1:210:0,209,0:0:0:209,0:7279,0:-654.023,-62.9153,0,-654.023,-62.9153,-654.023	1/2:104:0,46,57:0:0:46,57:1589,1989:-290.444,-161.831,-147.983,-128.671,0,-111.512	1/1:322:0,322,0:0:0:322,0:10969,0:-984.43,-96.9317,0,-984.43,-96.9317,-984.43	1/2:297:0,141,152:0:0:141,152:4817,5410:-830.381,-440.922,-398.477,-389.515,0,-343.758	1/2:26:0,10,16:0:0:10,16:352,572:-75.6186,-46.9946,-43.9843,-28.9778,0,-24.1613	1/2:361:0,154,202:0:0:154,202:5340,7157:-1016.85,-583.12,-536.761,-433.831,0,-373.023	1/2:156:0,80,75:0:0:80,75:2760,2646:-437.453,-215.481,-191.398,-222.053,0,-199.476	1/2:128:0,62,63:0:0:62,63:2125,2225:-353.575,-181.221,-162.557,-172.377,0,-153.413	1/1:4:0,4,0:0:0:4,0:144,0:-13.2999,-1.20412,0,-13.2999,-1.20412,-13.2999	1/1:13:0,13,0:0:0:13,0:459,0:-41.6064,-3.91339,0,-41.6064,-3.91339,-41.6064	1/1:2:0,2,0:0:0:2,0:70,0:-6.63669,-0.60206,0,-6.63669,-0.60206,-6.63669	1/1:3:0,3,0:0:0:3,0:100,0:-9.31735,-0.90309,0,-9.31735,-0.90309,-9.31735	1/1:5:0,5,0:0:0:5,0:177,0:-16.249,-1.50515,0,-16.249,-1.50515,-16.249	1/2:174:0,90,82:0:0:90,82:3082,2927:-488.722,-238.678,-211.585,-250.095,0,-225.411	1/1:239:0,238,0:0:0:238,0:8168,0:-731.806,-71.6451,0,-731.806,-71.6451,-731.806	1/2:57:0,30,27:0:0:30,27:1021,946:-159.887,-77.3251,-68.2942,-82.9069,0,-74.7791	1/2:2:0,1,1:0:0:1,1:36,36:-6.23114,-3.29724,-2.99621,-3.29354,0,-2.99251	1/2:180:0,91,89:0:0:91,89:3166,3184:-517.122,-259.985,-232.591,-257.49,0,-230.698	1/1:21:0,21,0:0:0:21,0:725,0:-65.2152,-6.32163,0,-65.2152,-6.32163,-65.2152	1/2:199:0,103,95:0:0:103,95:3536,3341:-558.499,-271.987,-240.981,-286.647,0,-258.049	1/2:59:0,28,31:0:0:28,31:985,1103:-170.369,-90.2341,-81.8053,-80.4887,0,-71.1568	1/1:53:0,51,1:0:0:51,1:1734,36:-155.923,-15.3525,0,-153.476,-12.8862,-153.175	1/1:129:0,125,1:0:0:125,1:4321,36:-386.676,-37.6288,0,-383.738,-34.6863,-383.437	1/2:166:0,101,63:0:0:101,63:3508,2233:-466.349,-181.976,-151.572,-284.433,0,-265.468	1/1:180:0,175,0:0:0:175,0:5969,0:-536.464,-52.6803,0,-536.464,-52.6803,-536.464	1/1:155:0,154,1:0:0:154,1:5280,36:-474.108,-46.3586,0,-471.17,-43.0614,-470.869	1/2:170:0,75,94:0:0:75,94:2634,3339:-486.196,-272.146,-249.569,-214.126,0,-185.829	1/1:230:0,227,1:0:0:227,1:7927,32:-711.367,-68.3338,0,-708.79,-65.7607,-708.489	2/2:4:0,0,4:0:0:0,4:0,140:-12.9446,-12.9446,-12.9446,-1.20412,-1.20412,0	1/1:126:0,125,1:0:0:125,1:4336,36:-389.056,-37.6288,0,-386.12,-34.3325,-385.818	1/2:38:0,21,17:0:0:21,17:715,612:-108.276,-50.2913,-43.9697,-58.3362,0,-53.2187	1/1:6:0,6,0:0:0:6,0:214,0:-19.5724,-1.80618,0,-19.5724,-1.80618,-19.5724	1/2:172:0,92,77:0:0:92,77:3167,2680:-474.344,-217.944,-190.25,-256.436,0,-233.256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chr06	33801651	.	G	A	175950	PASS	AB=0.495782;ABP=3.72473;AC=143;AF=0.760638;AN=188;AO=8227;CIGAR=1X;DP=10577;DPB=10577;DPRA=28.422;EPP=17737.7;EPPR=5058.26;GTI=2;LEN=1;MEANALT=1.05376;MQM=55.0827;MQMR=59.7509;NS=94;NUMALT=1;ODDS=0.531475;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293780;QR=82686;RO=2344;RPL=28;RPP=17625.3;RPPR=5015.07;RPR=8199;RUN=1;SAF=13;SAP=17755;SAR=8214;SRF=5;SRP=5049.6;SRR=2339;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:96:47,49:47:1661:49:1723:-126.079,0,-120.873	0/1:193:93,100:93:3242:100:3588:-262.767,0,-233.899	0/1:163:77,86:77:2734:86:3073:-226.946,0,-197.233	1/1:200:0,198:0:0:198:7068:-632.815,-59.6039,0	1/1:178:2,176:2:68:176:6283:-555.424,-47.1256,0	1/1:109:0,109:0:0:109:3920:-352.241,-32.8123,0	1/1:189:1,188:1:36:188:6705:-598.771,-53.3015,0	0/1:186:77,109:77:2691:109:3892:-291.77,0,-186.121	1/1:166:0,166:0:0:166:5897:-528.162,-49.971,0	0/1:105:61,44:61:2172:44:1580:-110.815,0,-164.126	0/1:43:16,27:16:567:27:968:-74.4505,0,-38.4097	1/1:74:0,74:0:0:74:2648:-237.952,-22.2762,0	1/1:69:0,69:0:0:69:2475:-221.735,-20.7711,0	0/1:75:35,40:35:1234:40:1427:-105.785,0,-88.7834	0/1:62:28,34:28:1004:34:1220:-91.3823,0,-71.9603	1/1:54:0,54:0:0:54:1918:-172.572,-16.2556,0	1/1:56:0,56:0:0:56:1992:-178.433,-16.8577,0	1/1:49:0,49:0:0:49:1747:-156.898,-14.7505,0	0/1:41:25,16:25:878:16:568:-38.9583,0,-66.9935	0/1:343:184,159:184:6541:159:5679:-407.187,0,-485.503	1/1:177:0,177:0:0:177:6319:-564.748,-53.2823,0	1/1:124:0,124:0:0:124:4441:-398.89,-37.3277,0	0/1:120:53,67:53:1871:67:2400:-179.475,0,-132.545	1/1:206:0,206:0:0:206:7388:-663.727,-62.0122,0	0/1:103:57,46:57:2011:46:1652:-117.762,0,-150.255	1/1:315:0,315:0:0:315:11261:-1009.92,-94.8245,0	0/1:292:152,139:152:5359:139:4950:-354.591,0,-394.421	0/1:28:18,10:18:629:10:360:-24.2817,0,-48.5026	0/1:352:200,152:200:7092:152:5413:-380.873,0,-531.881	0/1:150:69,80:69:2432:80:2840:-207.681,0,-174.009	0/1:123:62,60:62:2199:60:2130:-154.053,0,-161.081	1/1:4:0,4:0:0:4:144:-13.2999,-1.20412,0	1/1:13:0,13:0:0:13:468:-42.4159,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.8237,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.056,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5205,-1.50515,0	0/1:171:82,89:82:2852:89:3196:-235.366,0,-205.435	1/1:231:0,231:0:0:231:8239:-738.516,-69.5379,0	0/1:57:27,30:27:931:30:1061:-78.3379,0,-66.9401	0/1:2:1,1:1:36:1:36:-2.99251,0,-2.99621	0/1:176:85,91:85:3002:91:3264:-240.629,0,-217.423	1/1:20:0,20:0:0:20:712:-63.9856,-6.0206,0	0/1:193:93,100:93:3266:100:3585:-264.111,0,-235.984	0/1:59:32,27:32:1144:27:955:-68.4564,0,-85.495	1/1:51:0,51:0:0:51:1770:-159.377,-15.3525,0	1/1:127:1,126:1:36:126:4528:-401.978,-34.633,0	0/1:163:60,103:60:2117:103:3675:-280.368,0,-141.729	1/1:174:0,174:0:0:174:6196:-557.022,-52.3792,0	1/1:149:1,148:1:32:148:5294:-472.784,-41.6562,0	0/1:164:90,74:90:3186:74:2660:-189.965,0,-237.4	1/1:222:0,222:0:0:222:7976:-715.678,-66.8287,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:123:0,123:0:0:123:4420:-396.647,-37.0267,0	0/1:36:17,19:17:608:19:676:-50.3237,0,-44.2103	1/1:6:0,6:0:0:6:216:-19.7528,-1.80618,0	0/1:164:72,92:72:2538:92:3269:-243.181,0,-179.263	1/1:81:0,81:0:0:81:2891:-259.258,-24.3834,0	0/1:2:1,1:1:36:1:36:-2.99577,0,-2.99621	1/1:17:0,17:0:0:17:608:-54.9726,-5.11751,0	0/1:147:71,76:71:2512:76:2728:-201.137,0,-182.075	1/1:74:0,74:0:0:74:2621:-235.112,-22.2762,0	0/1:4:3,1:3:108:1:36:-2.39244,0,-8.87105	1/1:118:0,118:0:0:118:4221:-379.61,-35.5215,0	1/1:280:0,280:0:0:280:10002:-898.862,-84.2884,0	0/1:76:36,40:36:1259:40:1429:-105.739,0,-90.7199	0/1:65:46,19:46:1599:19:684:-42.294,0,-124.626	1/1:179:1,178:1:36:178:6367:-568.885,-50.2861,0	1/1:210:1,209:1:36:209:7488:-669.128,-59.6231,0	1/1:13:0,13:0:0:13:459:-41.6033,-3.91339,0	1/1:113:0,113:0:0:113:4050:-362.136,-34.0164,0	1/1:81:0,81:0:0:81:2876:-258.773,-24.3834,0	0/1:20:9,11:9:324:11:392:-28.5463,0,-23.4853	1/1:148:0,148:0:0:148:5242:-469.267,-44.5524,0	0/1:80:45,35:45:1591:35:1256:-88.5732,0,-119.394	1/1:236:0,235:0:0:235:8378:-749.564,-70.7421,0	1/1:186:0,186:0:0:186:6648:-597.342,-55.9916,0	0/1:79:37,42:37:1323:42:1483:-108.678,0,-95.5884	1/1:78:0,78:0:0:78:2754:-247.228,-23.4803,0	1/1:3:0,3:0:0:3:108:-10.056,-0.90309,0	1/1:156:2,154:2:72:154:5483:-484.121,-40.124,0	1/1:116:0,116:0:0:116:4143:-371.54,-34.9195,0	1/1:389:0,389:0:0:389:13905:-1248.38,-117.101,0	0/1:104:59,45:59:2060:45:1620:-114.609,0,-154.35	1/1:70:0,70:0:0:70:2503:-225.368,-21.0721,0	0/1:93:44,49:44:1566:49:1745:-128.958,0,-113.229	0/1:89:43,46:43:1522:46:1617:-118.752,0,-110.463	0/1:35:20,15:20:698:15:540:-38.3073,0,-52.6038	0/1:43:27,16:27:901:16:576:-39.109,0,-68.4465	1/1:71:0,71:0:0:71:2539:-227.974,-21.3731,0	0/1:28:13,15:13:468:15:525:-38.9988,0,-34.0308	0/1:45:26,19:26:927:19:680:-47.8037,0,-70.201	0/1:53:35,18:35:1231:18:648:-42.58,0,-95.1363	1/1:144:3,141:3:104:141:5041:-442.406,-33.6455,0	1/1:91:0,91:0:0:91:3233:-290.972,-27.3937,0
chr06	33802442	.	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chr06	33813734	.	T	C	161051	PASS	AB=0.514453;ABP=11.0449;AC=141;AF=0.766304;AN=184;AO=7597;CIGAR=1X;DP=9762;DPB=9762;DPRA=53.6264;EPP=16499.7;EPPR=4691.22;GTI=1;LEN=1;MEANALT=1.06593;MQM=59.9668;MQMR=59.9963;NS=92;NUMALT=1;ODDS=6.10367;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=270768;QR=77287;RO=2159;RPL=0;RPP=16499.7;RPPR=4691.22;RPR=7597;RUN=1;SAF=7597;SAP=16499.7;SAR=0;SRF=2159;SRP=4691.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:7,21:7:252:21:748:-59.2165,0,-14.6001	0/1:229:102,127:102:3656:127:4515:-337.585,0,-260.308	0/1:142:63,79:63:2268:79:2787:-208.324,0,-161.636	1/1:204:1,203:1:36:203:7219:-646.172,-57.8118,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	1/1:106:0,106:0:0:106:3780:-340.4,-31.9092,0	1/1:163:0,163:0:0:163:5806:-522.655,-49.0679,0	0/1:164:84,80:84:2988:80:2855:-207.818,0,-219.785	1/1:174:2,172:2:72:172:6116:-543.653,-45.5425,0	0/1:134:64,70:64:2284:70:2508:-185.634,0,-165.484	0/1:68:30,38:30:1071:38:1351:-101.42,0,-76.2316	1/1:71:0,71:0:0:71:2515:-226.602,-21.3731,0	1/1:79:0,79:0:0:79:2806:-252.779,-23.7814,0	0/1:85:37,48:37:1332:48:1711:-128.687,0,-94.5948	0/1:88:47,41:47:1688:41:1468:-105.925,0,-125.716	1/1:62:0,62:0:0:62:2201:-198.346,-18.6639,0	1/1:76:0,76:0:0:76:2715:-244.593,-22.8783,0	1/1:87:0,87:0:0:87:3106:-279.766,-26.1896,0	0/1:49:25,24:25:896:24:856:-62.6106,0,-66.2099	0/1:186:74,112:74:2660:112:3995:-303.75,0,-183.654	1/1:150:1,148:1:36:148:5302:-473.703,-41.615,0	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	0/1:102:53,49:53:1889:49:1752:-127.259,0,-139.581	1/1:114:1,113:1:36:113:4020:-358.388,-30.7191,0	0/1:96:36,60:36:1292:60:2144:-164.329,0,-87.6849	1/1:325:1,324:1:36:324:11579:-1037.88,-94.2365,0	0/1:168:76,92:76:2728:92:3283:-245.117,0,-195.19	0/1:43:21,22:21:756:22:782:-57.7593,0,-55.4229	0/1:215:112,103:112:4024:103:3658:-264.705,0,-297.626	0/1:163:88,75:88:3156:75:2663:-190.848,0,-235.197	0/1:113:55,58:55:1964:58:2072:-152.734,0,-143.019	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:233:120,113:120:4300:113:4005:-290.502,0,-317.037	1/1:102:0,102:0:0:102:3644:-328.161,-30.7051,0	0/1:81:47,34:47:1679:34:1209:-84.7323,0,-127.013	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:238:99,138:99:3525:138:4920:-371.249,0,-245.755	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:132:66,65:66:2372:65:2320:-169.266,0,-173.943	0/1:108:51,57:51:1832:57:2040:-151.361,0,-132.65	1/1:79:0,79:0:0:79:2809:-253.012,-23.7814,0	1/1:119:0,119:0:0:119:4236:-381.411,-35.8226,0	0/1:149:70,79:70:2497:79:2834:-210.445,0,-180.128	1/1:74:0,73:0:0:73:2601:-233.977,-21.9752,0	1/1:89:0,89:0:0:89:3167:-285.255,-26.7917,0	0/1:95:41,54:41:1472:54:1936:-145.919,0,-104.178	1/1:112:0,112:0:0:112:3992:-359.472,-33.7154,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:299:0,298:0:0:298:10644:-957.513,-89.7069,0	0/1:82:52,30:52:1864:30:1076:-72.4684,0,-143.355	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:148:61,87:61:2180:87:3108:-235.395,0,-151.914	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:74:44,30:44:1584:30:1076:-74.8766,0,-120.575	1/1:132:0,132:0:0:132:4688:-422.082,-39.736,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:136:0,136:0:0:136:4858:-437.286,-40.9401,0	1/1:142:0,142:0:0:142:5058:-455.367,-42.7463,0	0/1:57:27,30:27:972:30:1057:-78.2811,0,-70.6392	0/1:54:21,33:21:738:33:1180:-90.2524,0,-50.4858	1/1:171:0,171:0:0:171:6108:-549.82,-51.4761,0	1/1:170:1,169:1:36:169:6044:-540.465,-47.5768,0	1/1:20:0,20:0:0:20:714:-64.5869,-6.0206,0	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	1/1:99:0,99:0:0:99:3506:-315.75,-29.802,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:84:0,84:0:0:84:2995:-269.783,-25.2865,0	0/1:75:40,35:40:1432:35:1256:-90.7634,0,-106.6	1/1:154:0,154:0:0:154:5463:-491.784,-46.3586,0	1/1:284:0,284:0:0:284:10121:-910.829,-85.4925,0	0/1:124:40,84:40:1436:84:2996:-232.545,0,-92.2067	1/1:181:0,180:0:0:180:6423:-577.798,-54.1854,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:161:0,161:0:0:161:5739:-516.622,-48.4658,0	1/1:137:0,137:0:0:137:4878:-439.174,-41.2411,0	1/1:137:0,137:0:0:137:4867:-438.186,-41.2411,0	0/1:100:57,43:57:2044:43:1540:-108.79,0,-154.129	1/1:60:0,60:0:0:60:2127:-191.698,-18.0618,0	0/1:105:50,55:50:1758:55:1951:-144.257,0,-126.894	0/1:152:76,76:76:2728:76:2728:-200.006,0,-200.006	0/1:58:34,24:34:1216:24:860:-60.2621,0,-92.2868	0/1:71:29,42:29:1027:42:1499:-113.561,0,-71.369	1/1:70:0,70:0:0:70:2466:-222.195,-21.0721,0	0/1:26:20,6:20:720:6:212:-11.598,0,-57.302	0/1:88:58,30:58:2076:30:1065:-69.67,0,-160.62	0/1:84:59,25:59:2103:25:881:-54.3202,0,-164.252	1/1:184:0,184:0:0:184:6547:-589.317,-55.3895,0	1/1:150:2,148:2:72:148:5259:-466.614,-38.3178,0
chr06	33813773	.	G	A	407100	PASS	AB=0.512392;ABP=15.2271;AC=144;AF=0.765957;AN=188;AO=15142;CIGAR=1X;DP=19637;DPB=19637;DPRA=0;EPP=32883.4;EPPR=9737.72;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.9787;MQMR=59.9911;NS=94;NUMALT=1;ODDS=9.94871;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=535160;QR=159079;RO=4487;RPL=7574;RPP=3.01546;RPPR=32.5355;RPR=7568;RUN=1;SAF=7574;SAP=3.01546;SAR=7568;SRF=2119;SRP=33.0155;SRR=2368;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:84:35,49:35:1232:49:1704:-128.357,0,-85.8948	0/1:384:186,198:186:6632:198:7060:-519.867,0,-481.358	0/1:249:111,138:111:3921:138:4862:-362.783,0,-278.127	1/1:387:2,385:2:72:385:13635:-1220.12,-109.662,0	1/1:147:0,147:0:0:147:5157:-464.277,-44.2514,0	1/1:166:0,166:0:0:166:5871:-528.507,-49.971,0	1/1:221:0,221:0:0:221:7831:-704.826,-66.5276,0	0/1:357:179,178:179:6383:178:6256:-455.675,0,-467.094	1/1:280:1,279:1:36:279:9815:-879.704,-80.6901,0	0/1:288:147,141:147:5152:141:4989:-362.466,0,-377.13	0/1:160:86,74:86:3053:74:2642:-189.862,0,-226.835	1/1:151:0,151:0:0:151:5318:-478.761,-45.4555,0	1/1:141:1,140:1:36:140:4949:-441.965,-38.847,0	0/1:162:73,89:73:2592:89:3175:-237.208,0,-184.763	0/1:171:94,77:94:3339:77:2743:-195.636,0,-249.253	1/1:138:0,138:0:0:138:4897:-440.882,-41.5421,0	1/1:136:0,136:0:0:136:4850:-436.654,-40.9401,0	1/1:150:0,150:0:0:150:5359:-482.443,-45.1545,0	0/1:103:57,46:57:2023:46:1648:-117.602,0,-151.336	0/1:425:165,260:165:5843:260:9131:-693.847,0,-398.049	1/1:324:1,323:1:36:323:11312:-1014.38,-93.9354,0	1/1:158:0,158:0:0:158:5567:-501.158,-47.5627,0	0/1:186:92,94:92:3273:94:3341:-244.916,0,-238.798	1/1:166:0,166:0:0:166:5862:-527.687,-49.971,0	0/1:185:82,103:82:2921:103:3646:-272.654,0,-207.433	1/1:623:2,621:2:72:621:22045:-1976.64,-180.705,0	0/1:434:188,246:188:6643:246:8672:-649.842,0,-467.307	0/1:90:53,37:53:1844:37:1316:-91.6491,0,-139.145	0/1:506:246,260:246:8747:260:9202:-675.84,0,-634.904	0/1:273:141,132:141:5001:132:4692:-340.261,0,-368.057	0/1:267:130,137:130:4603:137:4837:-354.889,0,-334.062	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:8:0,8:0:0:8:276:-25.1752,-2.40824,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:471:244,227:244:8683:227:8015:-579.596,0,-639.682	1/1:291:0,290:0:0:290:10260:-922.977,-87.2987,0	0/1:155:90,65:90:3184:65:2282:-158.982,0,-240.124	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:369:160,208:160:5692:208:7289:-545.083,0,-401.413	1/1:101:0,101:0:0:101:3612:-325.286,-30.404,0	0/1:212:104,108:104:3688:108:3807:-279.013,0,-268.305	0/1:205:95,110:95:3362:110:3919:-291.193,0,-241.087	1/1:157:0,157:0:0:157:5563:-500.782,-47.2617,0	1/1:206:0,206:0:0:206:7201:-648.156,-62.0122,0	0/1:288:127,161:127:4505:161:5681:-424.718,0,-318.922	1/1:250:1,249:1:36:249:8787:-787.231,-71.6592,0	1/1:203:0,203:0:0:203:7100:-639.027,-61.1091,0	0/1:297:146,150:146:5185:150:5345:-391.719,0,-377.325	1/1:242:0,242:0:0:242:8438:-759.442,-72.8493,0	0/1:11:4,7:4:140:7:248:-19.3529,0,-9.63325	1/1:422:1,421:1:32:421:14954:-1342.4,-123.835,0	0/1:116:64,52:64:2304:52:1838:-130.78,0,-172.701	0/1:17:11,6:11:377:6:212:-14.3073,0,-29.1404	0/1:315:146,167:146:5193:167:5852:-431.851,0,-372.927	1/1:126:1,125:1:36:125:4382:-390.96,-34.3315,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	1/1:17:0,17:0:0:17:582:-52.7013,-5.11751,0	0/1:160:89,71:89:3149:71:2505:-177.537,0,-235.472	1/1:218:1,217:1:36:217:7708:-690.161,-62.0263,0	0/1:8:4,4:4:144:4:131:-9.70523,0,-10.9054	1/1:334:1,333:1:36:333:11764:-1054.91,-96.9457,0	1/1:334:6,328:6:197:328:11611:-1026.82,-82.4927,0	0/1:161:73,88:73:2582:88:3135:-233.911,0,-184.161	0/1:154:64,90:64:2256:90:3174:-239.528,0,-156.943	1/1:396:1,395:1:36:395:13969:-1253.4,-115.61,0	1/1:320:1,319:1:36:319:11311:-1014.28,-92.7313,0	1/1:54:2,52:2:72:52:1856:-160.483,-9.4189,0	1/1:195:0,195:0:0:195:6846:-616.221,-58.7009,0	1/1:181:0,181:0:0:181:6439:-579.6,-54.4864,0	0/1:30:19,11:19:672:11:396:-26.9518,0,-51.7759	1/1:182:0,182:0:0:182:6389:-575.112,-54.7875,0	0/1:148:76,72:76:2689:72:2517:-182.223,0,-197.699	1/1:357:0,356:0:0:356:12512:-1125.73,-107.167,0	1/1:497:2,494:2:42:494:17522:-1572.58,-145.631,0	0/1:249:92,157:92:3275:157:5564:-425.932,0,-220.014	1/1:265:0,265:0:0:265:9415:-847.319,-79.773,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:300:0,300:0:0:300:10528:-947.457,-90.309,0	1/1:254:2,252:2:72:252:8858:-790.385,-69.6249,0	1/1:393:0,393:0:0:393:13867:-1247.83,-118.305,0	0/1:236:115,120:115:4076:120:4250:-311.73,0,-296.075	1/1:158:0,158:0:0:158:5596:-503.768,-47.5627,0	0/1:199:100,99:100:3546:99:3465:-252.159,0,-259.445	0/1:329:170,159:170:6035:159:5687:-412.91,0,-444.218	0/1:112:58,54:58:2071:54:1932:-140.441,0,-152.945	0/1:157:71,86:71:2536:86:3054:-227.771,0,-181.23	1/1:154:0,154:0:0:154:5437:-489.467,-46.3586,0	0/1:86:51,35:51:1802:35:1230:-85.1139,0,-136.572	0/1:177:103,74:103:3624:74:2640:-184.565,0,-272.896	0/1:166:116,50:116:4084:50:1792:-111.591,0,-317.777	1/1:300:0,300:0:0:300:10596:-953.569,-90.309,0	1/1:276:0,276:0:0:276:9797:-881.683,-83.0843,0
chr06	33857250	.	CCGC	CCGT	27853.5	PASS	AB=0.383916;ABP=428.005;AC=43;AF=0.228723;AN=188;AO=1409;CIGAR=3M1X;DP=9807;DPB=9809.25;DPRA=1.01401;EPP=268.434;EPPR=43.9241;GTI=7;LEN=1;MEANALT=1.32075;MQM=59.9766;MQMR=59.99;NS=94;NUMALT=1;ODDS=3.60178;PAIRED=0;PAIREDR=0;PAO=2.5;PQA=88.5;PQR=88.5;PRO=2.5;QA=50153;QR=294680;RO=8365;RPL=497;RPP=268.434;RPPR=43.9241;RPR=912;RUN=1;SAF=1409;SAP=3062.61;SAR=0;SRF=8365;SRP=18167.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:23,30:23:817:30:1050:-78.8542,0,-57.8973	0/1:159:103,56:103:3654:56:1999:-132.319,0,-281.204	0/1:143:88,55:88:3104:55:1959:-133.537,0,-236.542	0/0:243:239,2:239:8417:2:72:0,-66.0713,-750.716	0/0:108:107,0:107:3775:0:0:0,-32.2102,-339.592	0/0:86:85,0:85:3026:0:0:0,-25.5875,-272.212	0/0:153:153,0:153:5413:0:0:0,-46.0576,-487.306	0/1:170:91,79:91:3191:79:2816:-202.505,0,-236.242	0/0:104:103,1:103:3611:1:36:0,-27.7088,-321.602	0/1:74:46,28:46:1628:28:1008:-68.7601,0,-124.526	0/0:20:19,1:19:657:1:36:0,-2.42232,-55.8526	0/0:47:47,0:47:1668:0:0:0,-14.1484,-150.406	0/0:45:45,0:45:1575:0:0:0,-13.5463,-142.039	0/1:28:23,5:23:812:5:180:-8.12322,0,-64.9722	0/1:26:17,9:17:612:9:324:-21.6791,0,-47.5867	0/0:24:24,0:24:842:0:0:0,-7.22472,-76.0977	0/0:34:34,0:34:1195:0:0:0,-10.235,-107.855	0/0:29:28,0:28:995:0:0:0,-8.42884,-89.505	0/0:17:16,1:16:561:1:36:0,-1.51923,-46.8999	0/1:223:140,82:140:4932:82:2906:-194.586,0,-376.852	0/0:429:428,1:428:15145:1:36:0,-125.544,-1359.2	0/0:183:183,0:183:6458:0:0:0,-55.0885,-581.319	0/1:64:31,32:31:1079:32:1116:-81.4783,0,-78.1506	0/0:122:122,0:122:4248:0:0:0,-36.7257,-382.506	0/1:91:50,41:50:1763:41:1460:-104.302,0,-131.56	0/0:402:398,3:398:13963:3:108:0,-110.998,-1246.4	0/1:185:110,74:110:3884:74:2635:-181.648,0,-294.01	0/1:12:10,2:10:358:2:72:-3.22436,0,-28.9506	0/1:260:182,76:182:6436:76:2692:-164.552,0,-501.365	0/1:157:101,56:101:3570:56:1992:-132.163,0,-274.249	0/1:167:103,64:103:3585:64:2288:-155.91,0,-272.592	0/0:11:10,0:10:353:0:0:0,-3.0103,-31.7502	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3825	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:14:13,0:13:467:0:0:0,-3.91339,-42.0094	0/0:20:19,0:19:671:0:0:0,-5.71957,-60.4895	0/1:70:59,11:59:2073:11:396:-14.9107,0,-165.767	0/0:235:234,0:234:8242:0:0:0,-70.441,-741.447	0/1:35:28,7:28:1001:7:252:-12.4413,0,-79.8115	0/1:11:6,5:6:214:5:180:-13.2407,0,-16.2965	0/1:156:108,48:108:3830:48:1716:-107.765,0,-297.941	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.832	0/1:220:100,119:100:3519:119:4242:-315.714,0,-250.677	0/1:22:17,5:17:593:5:180:-9.9294,0,-47.0734	0/0:37:37,0:37:1306:0:0:0,-11.1381,-117.841	0/0:117:117,0:117:4085:0:0:0,-35.2205,-367.844	0/1:146:75,70:75:2633:70:2472:-178.722,0,-193.208	0/0:208:208,0:208:7309:0:0:0,-62.6142,-657.876	0/0:158:158,0:158:5549:0:0:0,-47.5627,-499.544	0/1:99:63,34:63:2213:34:1220:-80.5848,0,-169.913	0/0:223:222,0:222:7822:0:0:0,-66.8287,-703.664	0/1:25:11,14:11:380:14:504:-38.1723,0,-27.0058	0/0:172:171,0:171:6031:0:0:0,-51.4761,-542.585	0/1:80:46,34:46:1618:34:1207:-84.8529,0,-121.826	0/1:18:15,3:15:500:3:108:-4.65663,0,-39.8969	0/1:143:87,56:87:3067:56:2008:-137.946,0,-233.215	0/0:42:42,0:42:1486:0:0:0,-12.6433,-134.035	0/1:7:5,2:5:178:2:72:-4.72951,0,-14.2614	0/0:22:22,0:22:781:0:0:0,-6.62266,-70.6134	0/1:131:66,64:66:2345:64:2272:-165.246,0,-171.817	0/0:88:88,0:88:3095:0:0:0,-26.4906,-278.78	0/1:9:5,4:5:170:4:144:-10.6043,0,-12.925	0/0:264:262,1:262:9244:1:36:0,-75.9125,-828.368	0/0:209:208,1:208:7330:1:36:0,-59.317,-656.165	0/1:82:56,26:56:1974:26:920:-58.4326,0,-153.25	0/1:89:54,35:54:1889:35:1242:-85.2922,0,-143.495	0/0:196:195,0:195:6900:0:0:0,-58.7008,-620.866	0/0:224:220,3:220:7771:3:108:0,-57.3758,-689.369	0/0:20:19,1:19:661:1:36:0,-2.42232,-56.2149	0/0:91:90,0:90:3165:0:0:0,-27.0927,-284.718	0/0:66:66,0:66:2350:0:0:0,-19.868,-211.76	0/1:29:10,19:10:353:19:676:-52.4381,0,-23.3789	0/0:187:187,0:187:6602:0:0:0,-56.2926,-594.272	0/1:44:35,9:35:1212:9:320:-15.897,0,-96.1361	0/0:218:218,0:218:7659:0:0:0,-65.6245,-689.364	0/0:228:226,0:226:7918:0:0:0,-68.0328,-712.303	0/1:166:79,86:79:2775:86:3071:-226.529,0,-199.904	0/0:125:125,0:125:4404:0:0:0,-37.6287,-396.54	0/0:12:12,0:12:431:0:0:0,-3.61236,-39.1307	0/0:145:144,0:144:5097:0:0:0,-43.3483,-458.521	0/0:246:246,0:246:8641:0:0:0,-74.0534,-777.623	0/0:259:259,0:259:9103:0:0:0,-77.9668,-819.265	0/1:50:35,14:35:1220:14:504:-30.5316,0,-94.9347	0/0:36:35,0:35:1244:0:0:0,-10.536,-111.905	0/1:27:21,6:21:751:6:212:-11.297,0,-59.7886	0/1:45:36,9:36:1269:9:315:-15.1409,0,-100.966	0/1:15:10,5:10:339:5:180:-12.0366,0,-26.3215	0/1:25:21,4:21:753:4:136:-5.04979,0,-60.571	0/0:46:45,0:45:1594:0:0:0,-13.5463,-143.389	0/1:30:21,9:21:733:9:315:-19.6563,0,-57.2595	0/1:34:28,6:28:963:6:216:-9.55549,0,-76.7433	0/1:11:10,1:10:352:1:36:-0.286945,0,-28.707	0/0:84:84,0:84:2971:0:0:0,-25.2865,-267.624	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.582
chr06	33857333	.	ATTA	ATTT,ATTTT	128078	PASS	AB=0.707268,0.289724;ABP=747.438,769.198;AC=146,42;AF=0.776596,0.223404;AN=188;AO=5269,582;CIGAR=3M1X,1M1I2M1X;DP=5871;DPB=6019.5;DPRA=0,0.706108;EPP=11444.5,1266.81;EPPR=9.52472;GTI=10;LEN=1,5;MEANALT=1.6383,2.13636;MQM=59.9977,59.9966;MQMR=60;NS=94;NUMALT=2;ODDS=1360.06;PAIRED=0,0;PAIREDR=0;PAO=3.5,3.5;PQA=126,126;PQR=0;PRO=0;QA=188598,20555;QR=87;RO=3;RPL=0,0;RPP=11444.5,1266.81;RPPR=9.52472;RPR=5269,582;RUN=1,1;SAF=0,0;SAP=11444.5,1266.81;SAR=5269,582;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:13:0,9,4:0:0:9,4:324,141:-38.2748,-11.8329,-9.12364,-26.7966,0,-25.5925	1/2:57:0,37,20:0:0:37,20:1328,708:-166.353,-58.0247,-46.8866,-108.684,0,-102.664	1/2:106:0,65,41:0:0:65,41:2313,1449:-306.872,-118.365,-98.7976,-188.862,0,-176.52	1/1:134:0,134,0:0:0:134,0:4800,0:-432.156,-40.338,0,-432.156,-40.338,-432.156	1/1:49:0,48,0:0:0:48,0:1728,0:-155.485,-14.4494,0,-155.485,-14.4494,-155.485	1/1:48:0,48,0:0:0:48,0:1728,0:-155.805,-14.4494,0,-155.805,-14.4494,-155.805	1/1:75:0,74,0:0:0:74,0:2656,0:-239.024,-22.2762,0,-239.024,-22.2762,-239.024	1/2:96:0,59,37:0:0:59,37:2105,1296:-277.406,-105.802,-88.0411,-171.957,0,-160.819	1/1:77:0,77,0:0:0:77,0:2764,0:-249.001,-23.1793,0,-249.001,-23.1793,-249.001	1/2:38:0,30,7:0:0:30,7:1072,245:-107.46,-20.0383,-11.0074,-87.5275,0,-85.4203	1/2:25:0,21,4:0:0:21,4:741,144:-72.4408,-12.1095,-5.78787,-60.69,0,-59.4858	1/1:60:0,59,0:0:0:59,0:2120,0:-190.709,-17.7608,0,-190.709,-17.7608,-190.709	1/1:73:0,73,0:0:0:73,0:2616,0:-235.688,-21.9752,0,-235.688,-21.9752,-235.688	1/2:32:0,28,4:0:0:28,4:1008,142:-94.1772,-11.9252,-3.49631,-82.6075,0,-81.4034	1/2:21:0,17,4:0:0:17,4:612,143:-61.9554,-12.0173,-6.89981,-50.2959,0,-49.0918	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:70:0,69,0:0:0:69,0:2468,0:-222.162,-20.7711,0,-222.162,-20.7711,-222.162	1/1:38:0,38,0:0:0:38,0:1360,0:-122.701,-11.4391,0,-122.701,-11.4391,-122.701	1/2:16:0,11,5:0:0:11,5:396,174:-46.8159,-14.4961,-11.1848,-32.6714,0,-31.1663	1/2:85:0,63,22:0:0:63,22:2249,775:-246.803,-63.4496,-44.4847,-183.707,0,-177.084	1/1:122:0,122,0:0:0:122,0:4363,0:-392.844,-36.7257,0,-392.844,-36.7257,-392.844	1/1:110:0,110,0:0:0:110,0:3924,0:-353.351,-33.1133,0,-353.351,-33.1133,-353.351	1/2:50:0,37,13:0:0:37,13:1332,460:-146.511,-37.822,-26.6839,-109.044,0,-105.131	1/1:53:0,53,0:0:0:53,0:1889,0:-170.286,-15.9546,0,-170.286,-15.9546,-170.286	1/2:67:0,30,37:0:0:30,37:1076,1272:-191.409,-103.639,-94.6084,-88.122,0,-76.9838	1/1:253:0,253,0:0:0:253,0:9046,0:-814.055,-76.1606,0,-814.055,-76.1606,-814.055	1/2:132:0,101,31:0:0:101,31:3589,1089:-381.446,-88.9874,-58.5834,-292.811,0,-283.479	1/2:19:0,15,4:0:0:15,4:536,144:-55.8096,-12.1095,-7.59405,-44.0594,0,-42.8552	1/2:125:0,91,32:0:0:91,32:3252,1128:-357.055,-91.9006,-64.5069,-265.214,0,-255.581	1/2:85:0,62,23:0:0:62,23:2220,802:-246.624,-65.5749,-46.911,-181.401,0,-174.477	1/2:55:0,45,10:0:0:45,10:1600,360:-160.117,-29.734,-16.1877,-130.742,0,-127.732	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:85:0,60,24:0:0:60,24:2146,864:-245.484,-70.498,-52.4362,-174.986,0,-167.761	1/1:153:0,152,0:0:0:152,0:5417,0:-487.408,-45.7566,0,-487.408,-45.7566,-487.408	1/2:19:0,15,4:0:0:15,4:540,142:-55.9903,-11.9251,-7.40964,-44.4211,0,-43.217	1/2:4:0,2,2:0:0:2,2:72,68:-11.7405,-5.85565,-5.25359,-6.23466,0,-5.6326	1/2:66:0,47,19:0:0:47,19:1680,649:-190.002,-53.0093,-38.8609,-137.339,0,-131.619	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/2:31:0,16,15:0:0:16,15:576,534:-90.8794,-43.8787,-39.0622,-47.3585,0,-42.8431	1/2:19:0,15,4:0:0:15,4:540,144:-56.1708,-12.1095,-7.59405,-44.4211,0,-43.217	1/1:52:0,52,0:0:0:52,0:1864,0:-168.039,-15.6536,0,-168.039,-15.6536,-168.039	1/1:69:0,69,0:0:0:69,0:2480,0:-223.453,-20.7711,0,-223.453,-20.7711,-223.453	1/2:71:0,51,20:0:0:51,20:1806,711:-205.402,-58.2959,-42.9433,-147.461,0,-141.44	1/1:181:0,181,0:0:0:181,0:6475,0:-582.834,-54.4864,0,-582.834,-54.4864,-582.834	1/1:107:1,106,0:1:25:106,0:3793,0:-339.067,-29.7103,0,-339.368,-31.9092,-341.315	1/2:49:0,40,8:0:0:40,8:1436,280:-139.995,-22.8433,-10.8021,-117.215,0,-114.806	1/1:42:0,42,0:0:0:42,0:1512,0:-136.375,-12.6433,0,-136.375,-12.6433,-136.375	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:113:0,113,0:0:0:113,0:4049,0:-364.595,-34.0164,0,-364.595,-34.0164,-364.595	1/2:14:0,10,4:0:0:10,4:360,138:-40.9406,-11.5557,-8.54539,-29.734,0,-28.5299	1/2:19:0,6,13:0:0:6,13:216,465:-55.9001,-38.2749,-36.4687,-17.9843,0,-14.0709	1/2:61:0,42,18:0:0:42,18:1508,641:-175.364,-52.3454,-39.7021,-123.119,0,-117.7	1/1:57:0,57,0:0:0:57,0:2048,0:-184.592,-17.1587,0,-184.592,-17.1587,-184.592	1/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chr06	33867583	.	A	T	36829.4	PASS	AB=0.558887;ABP=128.58;AC=45;AF=0.239362;AN=188;AO=2335;CIGAR=1X;DP=8464;DPB=8464;DPRA=1.16119;EPP=5047.37;EPPR=13281.6;GTI=3;LEN=1;MEANALT=1.04;MQM=39.5572;MQMR=42.4117;NS=94;NUMALT=1;ODDS=0.799175;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83017;QR=219208;RO=6123;RPL=3;RPP=5047.37;RPPR=13281.6;RPR=2332;RUN=1;SAF=0;SAP=5073.4;SAR=2335;SRF=0;SRP=13298.9;SRR=6123;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:10,8:10:360:8:288:-19.2375,0,-25.7362	0/1:95:42,53:42:1512:53:1884:-128.506,0,-101.176	0/1:76:27,49:27:968:49:1733:-121.518,0,-59.3306	0/0:158:158,0:158:5680:0:0:0,-47.5627,-494.493	0/0:58:57,1:57:2029:1:32:0,-14.3387,-173.932	0/0:47:47,0:47:1680:0:0:0,-14.1484,-144.146	0/0:141:141,0:141:5040:0:0:0,-42.4452,-444.372	0/1:122:53,69:53:1900:69:2467:-167.669,0,-126.335	0/0:106:105,1:105:3744:1:32:0,-28.8284,-315.89	0/1:98:38,60:38:1345:60:2136:-154.302,0,-89.0278	0/1:56:24,32:24:840:32:1148:-82.633,0,-57.812	0/0:75:74,0:74:2648:0:0:0,-22.2762,-224.819	0/0:95:95,0:95:3408:0:0:0,-28.5978,-291.371	0/1:75:40,35:40:1436:35:1240:-84.0461,0,-102.717	0/1:93:43,50:43:1533:50:1768:-125.531,0,-106.95	0/0:65:65,0:65:2331:0:0:0,-19.5669,-203.873	0/0:82:82,0:82:2944:0:0:0,-24.6845,-249.658	0/0:84:84,0:84:3003:0:0:0,-25.2865,-255.482	0/1:56:24,32:24:864:32:1132:-78.3302,0,-56.8216	0/1:261:99,162:99:3560:162:5788:-422.026,0,-231.922	0/0:101:101,0:101:3613:0:0:0,-30.404,-314.61	0/0:74:74,0:74:2647:0:0:0,-22.2762,-233.737	0/1:72:40,32:40:1436:32:1140:-77.0561,0,-105.314	0/0:34:34,0:34:1224:0:0:0,-10.235,-105.337	0/1:67:33,34:33:1161:34:1197:-82.0509,0,-80.5445	0/0:263:262,1:262:9394:1:36:0,-75.6348,-829.261	0/1:212:83,129:83:2984:129:4592:-329.336,0,-196.574	0/1:66:29,37:29:1044:37:1320:-93.2454,0,-70.5692	0/1:269:118,151:118:4240:151:5373:-388.458,0,-294.981	0/1:102:42,60:42:1512:60:2115:-150.274,0,-100.987	0/1:90:29,61:29:1040:61:2149:-157.41,0,-64.4242	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.96	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.80756	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.6673	0/0:3:3,0:3:99:0:0:0,-0.90309,-8.58087	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.58608	0/1:261:117,144:117:4208:144:5136:-372.614,0,-294.65	0/0:137:137,0:137:4920:0:0:0,-41.2411,-428.757	0/1:98:54,44:54:1926:44:1564:-102.096,0,-134.071	0/1:5:4,1:4:140:1:36:-1.91845,0,-11.1018	0/1:176:60,113:60:2139:113:4025:-289.78,0,-135.254	0/0:69:69,0:69:2462:0:0:0,-20.7711,-214.645	0/1:104:40,64:40:1423:64:2267:-160.921,0,-93.6819	0/1:100:48,52:48:1719:52:1864:-131.768,0,-121.64	0/0:89:89,0:89:3169:0:0:0,-26.7917,-280.037	0/0:101:101,0:101:3620:0:0:0,-30.404,-321.956	0/1:122:61,60:61:2187:60:2126:-140.143,0,-149.219	0/0:148:148,0:148:5294:0:0:0,-44.5524,-466.583	0/0:74:73,1:73:2628:1:36:0,-18.7955,-228.152	0/1:72:32,40:32:1152:40:1428:-100.831,0,-80.4925	0/0:106:106,0:106:3782:0:0:0,-31.9092,-335.794	0/1:8:5,3:5:180:3:108:-7.33771,0,-13.8579	0/0:123:123,0:123:4420:0:0:0,-37.0267,-377.421	0/1:43:26,17:26:927:17:585:-39.2438,0,-69.8683	0/1:11:6,5:6:216:5:180:-12.0602,0,-15.5185	0/1:99:37,62:37:1319:62:2204:-158.559,0,-85.3133	0/0:39:39,0:39:1396:0:0:0,-11.7402,-122.759	0/1:3:2,1:2:72:1:36:-2.63303,0,-5.85828	0/0:24:24,0:24:860:0:0:0,-7.22472,-76.0783	0/1:47:23,24:23:824:24:849:-58.964,0,-58.3767	0/0:138:138,0:138:4917:0:0:0,-41.5421,-432.88	0/1:10:4,6:4:144:6:204:-14.8893,0,-9.41194	0/0:143:143,0:143:5124:0:0:0,-43.0473,-455.896	0/0:162:162,0:162:5808:0:0:0,-48.7669,-511.385	0/1:71:31,40:31:1112:40:1420:-100.324,0,-76.2488	0/1:91:31,60:31:1112:60:2128:-156.864,0,-70.8509	0/0:97:97,0:97:3476:0:0:0,-29.1999,-304.328	0/0:100:100,0:100:3575:0:0:0,-30.103,-315.075	0/0:34:34,0:34:1211:0:0:0,-10.235,-105.148	0/0:66:66,0:66:2351:0:0:0,-19.868,-199.309	0/0:108:108,0:108:3839:0:0:0,-32.5112,-341.434	0/1:17:6,11:6:216:11:392:-29.3875,0,-14.3312	0/0:145:144,1:144:5160:1:36:0,-40.3032,-437.059	0/1:59:26,33:26:936:33:1176:-79.5901,0,-61.7592	0/0:113:112,0:112:4024:0:0:0,-33.7154,-351.684	0/0:108:108,0:108:3884:0:0:0,-32.5112,-341.43	0/1:67:34,33:34:1202:33:1171:-78.6728,0,-81.2601	0/0:65:65,0:65:2332:0:0:0,-19.5669,-197.707	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.8298	0/0:80:80,0:80:2872:0:0:0,-24.0824,-250.955	0/0:47:47,0:47:1679:0:0:0,-14.1484,-142.243	0/0:184:184,0:184:6604:0:0:0,-55.3895,-581.451	0/1:146:72,74:72:2592:74:2636:-183.899,0,-184.726	0/0:76:76,0:76:2702:0:0:0,-22.8783,-238.642	0/1:117:64,53:64:2300:53:1900:-129.477,0,-165.959	0/1:151:71,80:71:2535:80:2853:-198.847,0,-175.99	0/1:56:20,36:20:720:36:1288:-91.1383,0,-45.1095	0/1:109:59,50:59:2107:50:1733:-112.595,0,-144.579	0/0:96:96,0:96:3440:0:0:0,-28.8989,-294.261	0/1:63:36,27:36:1288:27:964:-61.9938,0,-92.6041	0/1:134:55,79:55:1976:79:2802:-199.708,0,-133.172	0/1:101:37,64:37:1332:64:2300:-168.79,0,-87.5722	0/0:90:90,0:90:3215:0:0:0,-27.0927,-283.338	0/0:127:127,0:127:4501:0:0:0,-38.2308,-394.074
chr06	33869473	.	A	G	195.364	PASS	AB=0.141975;ABP=1806.67;AC=28;AF=0.148936;AN=188;AO=259;CIGAR=1X;DP=6598;DPB=6598;DPRA=0.716228;EPP=4.89671;EPPR=12795.6;GTI=14;LEN=1;MEANALT=1;MQM=57.4054;MQMR=48.3505;NS=94;NUMALT=1;ODDS=44.9842;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=8615;QR=226838;RO=6339;RPL=137;RPP=4.89671;RPPR=12795.6;RPR=122;RUN=1;SAF=0;SAP=565.422;SAR=259;SRF=0;SRP=13768;SRR=6339;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:14,3:14:487:3:99:-4.11062,0,-37.0181	0/1:54:47,7:47:1679:7:221:-3.88519,0,-126.483	0/1:138:120,18:120:4308:18:607:-12.2011,0,-325.134	0/0:144:144,0:144:5137:0:0:0,-43.3483,-455.923	0/0:78:78,0:78:2778:0:0:0,-23.4803,-233.929	0/0:63:63,0:63:2256:0:0:0,-18.9649,-192.916	0/0:142:142,0:142:5066:0:0:0,-42.7463,-447.751	0/0:72:66,6:66:2372:6:195:0,-3.81387,-182.467	0/0:89:89,0:89:3172:0:0:0,-26.7917,-270.206	0/0:39:39,0:39:1400:0:0:0,-11.7402,-123.905	0/0:35:33,2:33:1184:2:64:0,-4.45736,-98.9102	0/0:60:60,0:60:2156:0:0:0,-18.0618,-183.794	0/0:50:50,0:50:1792:0:0:0,-15.0515,-149.694	0/0:44:40,4:40:1427:4:131:0,-1.13185,-107.593	0/1:34:25,9:25:896:9:304:-17.4529,0,-70.079	0/0:41:41,0:41:1476:0:0:0,-12.3422,-124.596	0/0:65:65,0:65:2328:0:0:0,-19.5669,-197.113	0/0:43:43,0:43:1531:0:0:0,-12.9443,-129.231	0/1:23:16,7:16:576:7:232:-14.2722,0,-42.1482	0/1:88:73,15:73:2606:15:510:-17.2728,0,-205.007	0/0:118:118,0:118:4227:0:0:0,-35.5215,-359.792	0/0:81:81,0:81:2912:0:0:0,-24.3834,-259.273	0/0:43:40,3:40:1419:3:108:0,-3.31211,-116.128	0/0:88:88,0:88:3156:0:0:0,-26.4906,-267.749	0/1:51:43,8:43:1548:8:271:-9.3577,0,-117.164	0/0:272:272,0:272:9747:0:0:0,-81.8802,-866.315	0/1:158:141,17:141:5038:17:574:-4.05414,0,-384.146	0/1:10:9,1:9:324:1:36:-0.587975,0,-24.9584	0/1:144:126,18:126:4524:18:610:-11.8377,0,-357.303	0/1:59:51,8:51:1836:8:268:-6.66722,0,-138.69	0/1:54:47,7:47:1665:7:232:-4.94951,0,-132.052	0/0:7:7,0:7:252:0:0:0,-2.10721,-21.5009	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.7005	0/0:7:7,0:7:252:0:0:0,-2.10721,-21.6806	0/0:7:7,0:7:248:0:0:0,-2.10721,-21.4202	0/0:8:8,0:8:288:0:0:0,-2.40824,-24.7295	0/1:86:77,9:77:2752:9:299:-1.32186,0,-220.69	0/0:136:136,0:136:4875:0:0:0,-40.9401,-415.157	0/0:34:32,2:32:1152:2:72:0,-3.3983,-89.9665	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.36921	0/1:46:36,10:36:1272:10:312:-14.5326,0,-94.9819	0/0:38:38,0:38:1368:0:0:0,-11.4391,-114.384	0/1:96:83,13:83:2958:13:420:-9.21174,0,-222.514	0/1:19:17,2:17:612:2:68:-0.71454,0,-47.503	0/0:54:54,0:54:1931:0:0:0,-16.2556,-171.544	0/0:113:113,0:113:4036:0:0:0,-34.0164,-359.189	0/1:76:68,8:68:2444:8:258:-0.224114,0,-184.067	0/0:157:157,0:157:5618:0:0:0,-47.2617,-499.253	0/0:99:99,0:99:3536:0:0:0,-29.802,-315.21	0/1:64:54,10:54:1923:10:335:-11.1632,0,-151.342	0/0:113:113,0:113:4043:0:0:0,-34.0164,-358.98	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:112:112,0:112:4020:0:0:0,-33.7154,-342.315	0/1:14:11,3:11:392:3:104:-5.48839,0,-31.0886	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.43644	0/0:64:59,5:59:2116:5:167:0,-3.90833,-166.282	0/0:45:45,0:45:1597:0:0:0,-13.5463,-142.272	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.5627	0/0:40:38,2:38:1347:2:68:0,-5.61338,-107.597	0/0:92:90,2:90:3223:2:72:0,-20.858,-278.2	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.5972	0/0:136:136,0:136:4876:0:0:0,-40.9401,-432.592	0/0:150:150,0:150:5388:0:0:0,-45.1545,-478.769	0/1:30:26,4:26:936:4:126:-2.62051,0,-70.862	0/1:34:30,4:30:1076:4:131:-1.74454,0,-85.585	0/0:152:152,0:152:5394:0:0:0,-45.7566,-479.151	0/0:109:109,0:109:3907:0:0:0,-32.8123,-346.725	0/0:26:26,0:26:936:0:0:0,-7.82678,-78.8792	0/0:74:74,0:74:2640:0:0:0,-22.2762,-225.164	0/0:67:67,0:67:2396:0:0:0,-20.169,-212.588	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5974	0/0:114:114,0:114:4100:0:0:0,-34.3174,-350.136	0/1:52:45,7:45:1599:7:236:-5.91634,0,-120.46	0/0:330:330,0:330:11820:0:0:0,-99.3399,-1003.87	0/0:140:140,0:140:5023:0:0:0,-42.1442,-448.06	0/1:85:68,17:68:2412:17:553:-23.7959,0,-177.936	0/0:60:60,0:60:2152:0:0:0,-18.0618,-183.075	0/0:5:5,0:5:167:0:0:0,-1.50515,-14.6881	0/0:88:88,0:88:3138:0:0:0,-26.4906,-267.387	0/0:153:153,0:153:5488:0:0:0,-46.0576,-467.754	0/0:215:215,0:215:7679:0:0:0,-64.7214,-683.264	0/1:56:49,7:49:1747:7:231:-4.24629,0,-139.08	0/0:55:55,0:55:1980:0:0:0,-16.5566,-176.33	0/0:35:35,0:35:1256:0:0:0,-10.536,-111.759	0/0:50:47,3:47:1688:3:104:0,-5.34869,-141.859	0/1:13:11,2:11:396:2:63:-2.06977,0,-29.5927	0/1:38:33,5:33:1184:5:167:-3.87214,0,-89.5446	0/0:89:89,0:89:3196:0:0:0,-26.7917,-271.718	0/0:23:23,0:23:824:0:0:0,-6.92369,-69.7047	0/1:62:53,9:53:1890:9:295:-8.20587,0,-142.224	0/1:19:17,2:17:608:2:72:-1.11673,0,-48.7321	0/0:102:102,0:102:3664:0:0:0,-30.7051,-324.368	0/0:84:84,0:84:2992:0:0:0,-25.2865,-266.005
chr06	33926939	.	C	T	63805.1	PASS	AB=0.461242;ABP=26.7437;AC=139;AF=0.763736;AN=182;AO=3016;CIGAR=1X;DP=4001;DPB=4001;DPRA=8.88;EPP=6500.16;EPPR=2115.93;GTI=1;LEN=1;MEANALT=1;MQM=54.1051;MQMR=44.3574;NS=91;NUMALT=1;ODDS=1.73907;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107647;QR=35005;RO=985;RPL=3010;RPP=6500.16;RPPR=2115.93;RPR=6;RUN=1;SAF=3016;SAP=6552.17;SAR=0;SRF=985;SRP=2141.91;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:14,5:14:504:5:174:-9.78834,0,-38.7608	0/1:49:28,21:28:1008:21:756:-53.2015,0,-73.775	0/1:76:27,49:27:959:49:1760:-135.045,0,-61.4313	1/1:102:0,102:0:0:102:3655:-328.082,-30.7051,0	1/1:18:0,18:0:0:18:644:-57.8284,-5.41854,0	1/1:19:0,19:0:0:19:684:-61.7224,-5.71957,0	1/1:57:0,57:0:0:57:2035:-182.903,-17.1587,0	0/1:41:23,18:23:828:18:639:-45.1668,0,-60.2989	1/1:43:0,43:0:0:43:1544:-138.442,-12.9443,0	0/1:46:21,25:21:752:25:900:-67.2446,0,-52.6556	0/1:15:6,9:6:208:9:324:-24.9576,0,-14.3235	1/1:44:0,44:0:0:44:1560:-139.803,-13.2453,0	1/1:37:0,37:0:0:37:1315:-118.184,-11.1381,0	0/1:16:9,7:9:324:7:248:-17.8143,0,-23.693	0/1:30:14,16:14:500:16:576:-43.1065,0,-35.745	1/1:14:0,14:0:0:14:476:-42.7111,-4.21442,0	1/1:11:0,11:0:0:11:396:-35.8867,-3.31133,0	1/1:11:0,11:0:0:11:392:-35.5345,-3.31133,0	0/1:10:7,3:7:243:3:108:-7.03954,0,-18.9182	0/1:97:59,38:59:2116:38:1358:-92.552,0,-157.708	1/1:113:0,113:0:0:113:3998:-359.225,-34.0164,0	1/1:32:0,32:0:0:32:1148:-103.546,-9.63296,0	0/1:37:19,18:19:680:18:640:-46.4991,0,-49.5616	1/1:32:0,32:0:0:32:1152:-103.816,-9.63296,0	0/1:30:22,8:22:792:8:288:-17.0117,0,-61.3561	1/1:152:0,152:0:0:152:5433:-488.726,-45.7566,0	0/1:135:78,57:78:2777:57:2039:-142.513,0,-203.501	0/1:21:10,11:10:351:11:396:-29.5886,0,-25.1915	0/1:131:73,58:73:2603:58:2075:-147.284,0,-191.808	0/1:46:21,25:21:756:25:892:-66.573,0,-53.5744	0/1:72:44,28:44:1584:28:995:-67.6343,0,-119.161	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	1/1:13:0,13:0:0:13:468:-42.2303,-3.91339,0	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:212:-19.38,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:126:73,53:73:2543:53:1875:-130.886,0,-186.784	1/1:28:0,28:0:0:28:1004:-90.305,-8.42884,0	0/1:15:6,9:6:207:9:324:-24.5503,0,-14.1311	.:.:.:.:.:.:.:.	0/1:64:37,27:37:1319:27:964:-67.3737,0,-95.7987	1/1:12:0,12:0:0:12:428:-38.6764,-3.61236,0	0/1:76:31,45:31:1103:45:1620:-122.74,0,-75.3736	0/1:16:7,9:7:243:9:324:-24.6543,0,-16.9649	1/1:28:0,28:0:0:28:989:-88.3656,-8.42884,0	1/1:61:0,61:0:0:61:2183:-196.504,-18.3628,0	0/1:32:21,11:21:752:11:392:-25.9016,0,-56.8701	1/1:96:0,96:0:0:96:3431:-308.659,-28.8989,0	1/1:60:0,60:0:0:60:2160:-194.1,-18.0618,0	0/1:42:17,25:17:578:25:896:-68.0803,0,-39.0293	1/1:34:0,34:0:0:34:1196:-107.848,-10.235,0	.:.:.:.:.:.:.:.	1/1:43:0,43:0:0:43:1533:-136.338,-12.9443,0	0/1:28:11,17:11:396:17:612:-46.9691,0,-26.4693	0/1:11:4,7:4:144:7:252:-19.6597,0,-9.81818	0/1:49:19,30:19:667:30:1080:-81.5175,0,-44.8403	1/1:20:0,20:0:0:20:720:-65.0558,-6.0206,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.3232	1/1:14:0,14:0:0:14:504:-45.6839,-4.21442,0	0/1:42:31,11:31:1108:11:396:-23.1588,0,-84.798	1/1:44:0,44:0:0:44:1584:-142.469,-13.2453,0	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	1/1:104:0,104:0:0:104:3724:-335.029,-31.3071,0	1/1:78:0,78:0:0:78:2793:-251.138,-23.4803,0	0/1:40:25,15:25:896:15:522:-35.1777,0,-67.2372	0/1:26:12,14:12:424:14:480:-35.6204,0,-30.1803	1/1:94:0,94:0:0:94:3376:-303.582,-28.2968,0	1/1:77:0,77:0:0:77:2728:-245.433,-23.1793,0	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	1/1:22:0,22:0:0:22:792:-70.754,-6.62266,0	1/1:24:0,24:0:0:24:858:-77.4077,-7.22472,0	0/1:14:6,8:6:216:8:284:-21.6607,0,-15.2604	1/1:80:0,80:0:0:80:2868:-256.525,-24.0824,0	0/1:68:29,39:29:1032:39:1396:-104.919,0,-70.9523	1/1:56:0,56:0:0:56:1972:-177.04,-16.8577,0	1/1:84:0,84:0:0:84:2997:-269.559,-25.2865,0	0/1:22:11,11:11:396:11:396:-28.8826,0,-26.271	1/1:66:0,66:0:0:66:2368:-212.301,-19.868,0	1/1:11:0,11:0:0:11:396:-35.8923,-3.31133,0	1/1:48:0,48:0:0:48:1720:-154.475,-14.4494,0	1/1:39:0,39:0:0:39:1379:-124.034,-11.7402,0	1/1:73:0,73:0:0:73:2602:-233.781,-21.9752,0	0/1:50:29,21:29:1003:21:743:-52.0111,0,-73.7994	1/1:16:0,16:0:0:16:546:-49.3321,-4.81648,0	0/1:16:9,7:9:309:7:239:-16.9942,0,-21.8879	0/1:75:48,27:48:1685:27:968:-64.6669,0,-125.173	0/1:6:4,2:4:144:2:72:-5.01335,0,-11.3233	0/1:30:15,15:15:540:15:540:-39.7826,0,-39.2289	1/1:25:0,25:0:0:25:891:-80.1015,-7.52575,0	0/1:15:9,6:9:324:6:208:-14.5212,0,-24.5824	0/1:53:25,28:25:888:28:1000:-74.113,0,-63.2391	0/1:32:26,6:26:923:6:216:-10.141,0,-72.0662	1/1:85:0,85:0:0:85:3029:-272.173,-25.5876,0	1/1:40:0,40:0:0:40:1401:-125.757,-12.0412,0
chr06	34234183	.	G	A	140297	PASS	AB=0.423449;ABP=218.775;AC=143;AF=0.760638;AN=188;AO=5384;CIGAR=1X;DP=7843;DPB=7843;DPRA=0;EPP=1056.26;EPPR=1207.61;GTI=6;LEN=1;MEANALT=1.04255;MQM=58.8241;MQMR=59.9821;NS=94;NUMALT=1;ODDS=1.05536;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192010;QR=87513;RO=2455;RPL=1885;RPP=1053.66;RPPR=1207.61;RPR=3499;RUN=1;SAF=1;SAP=11685.5;SAR=5383;SRF=0;SRP=5333.98;SRR=2455;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:18,10:18:648:10:360:-24.2977,0,-50.223	0/1:155:103,52:103:3648:52:1868:-121.676,0,-281.866	0/1:65:38,27:38:1355:27:942:-65.4703,0,-102.683	1/1:116:0,116:0:0:116:4137:-372.4,-34.9195,0	1/1:57:1,56:1:36:56:2015:-177.993,-13.5604,0	1/1:61:0,61:0:0:61:2192:-197.496,-18.3628,0	1/1:61:0,61:0:0:61:2183:-196.091,-18.3628,0	0/1:250:140,110:140:4977:110:3931:-278.24,0,-372.823	0/1:36:4,32:4:136:32:1143:-91.0842,0,-1.73846	0/1:127:76,51:76:2728:51:1822:-125.943,0,-207.503	0/1:82:49,33:49:1746:33:1184:-82.1689,0,-132.738	1/1:56:0,56:0:0:56:1989:-178.078,-16.8577,0	1/1:50:0,50:0:0:50:1759:-158.349,-15.0515,0	0/1:94:60,33:60:2156:33:1160:-75.9407,0,-165.951	0/1:48:25,23:25:891:23:828:-60.3321,0,-66.0593	1/1:47:0,46:0:0:46:1630:-146.44,-13.8474,0	1/1:88:0,88:0:0:88:3130:-281.526,-26.4906,0	1/1:60:0,60:0:0:60:2151:-193.781,-18.0618,0	0/1:41:28,13:28:1004:13:468:-30.117,0,-78.3336	0/1:181:105,76:105:3731:76:2714:-189.258,0,-281.506	1/1:81:0,81:0:0:81:2912:-262.284,-24.3834,0	1/1:58:0,58:0:0:58:2080:-186.309,-17.4597,0	0/1:21:12,9:12:423:9:324:-23.1704,0,-32.0834	1/1:83:1,82:1:36:82:2932:-260.374,-21.3872,0	0/1:82:50,32:50:1800:32:1143:-78.4482,0,-137.598	1/1:257:0,257:0:0:257:9171:-823.881,-77.3647,0	0/1:196:109,87:109:3890:87:3106:-220.743,0,-291.292	0/1:40:27,13:27:968:13:468:-30.3722,0,-75.3962	0/1:246:149,97:149:5302:97:3471:-238.389,0,-403.264	0/1:157:107,50:107:3818:50:1777:-112.436,0,-296.555	0/1:79:44,35:44:1576:35:1232:-87.3709,0,-118.35	1/1:4:0,4:0:0:4:144:-13.2956,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.2956,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:165:94,71:94:3356:71:2543:-179.345,0,-252.588	1/1:156:0,156:0:0:156:5567:-500.508,-46.9607,0	0/1:78:34,44:34:1224:44:1557:-116.433,0,-86.9867	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:161:100,61:100:3559:61:2188:-148.678,0,-272.009	1/1:28:0,28:0:0:28:989:-89.2668,-8.42884,0	0/1:98:56,42:56:1995:42:1512:-106.843,0,-150.322	0/1:72:37,35:37:1305:35:1238:-90.0026,0,-96.075	1/1:65:0,65:0:0:65:2336:-210.041,-19.567,0	1/1:59:2,57:2:72:57:2031:-176.065,-10.924,0	0/1:117:80,37:80:2855:37:1328:-83.9605,0,-221.967	1/1:140:1,139:1:36:139:4926:-439.251,-38.5459,0	1/1:68:0,68:0:0:68:2439:-219.707,-20.47,0	0/1:184:112,72:112:3996:72:2568:-175.559,0,-304.442	1/1:86:0,86:0:0:86:3053:-274.859,-25.8886,0	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	1/1:79:0,79:0:0:79:2814:-253.387,-23.7814,0	0/1:48:23,25:23:816:25:882:-65.0882,0,-59.3123	0/1:15:11,4:11:377:4:144:-8.74661,0,-29.7425	0/1:135:81,54:81:2869:54:1929:-133.186,0,-217.808	1/1:16:0,16:0:0:16:539:-48.7968,-4.81648,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:7:0,7:0:0:7:252:-23.0111,-2.10721,0	0/1:64:37,27:37:1320:27:968:-68.1538,0,-99.836	1/1:114:0,114:0:0:114:4063:-365.68,-34.3174,0	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:153:2,151:2:72:151:5374:-476.682,-39.2209,0	1/1:147:2,145:2:72:145:5174:-458.329,-37.4147,0	0/1:91:48,43:48:1724:43:1548:-112.156,0,-128.052	0/1:104:50,54:50:1788:54:1931:-142.091,0,-129.895	1/1:112:0,112:0:0:112:3997:-359.726,-33.7154,0	1/1:86:1,85:1:36:85:3048:-270.76,-22.2903,0	1/1:32:0,32:0:0:32:1140:-102.777,-9.63296,0	1/1:62:1,61:1:36:61:2165:-191.197,-15.0656,0	1/1:92:0,91:0:0:91:3267:-292.997,-27.3937,0	0/1:29:17,12:17:604:12:432:-30.4913,0,-45.9607	1/1:73:0,73:0:0:73:2578:-230.309,-21.9752,0	0/1:83:57,26:57:2027:26:936:-59.5256,0,-157.711	1/1:78:0,78:0:0:78:2756:-248.168,-23.4803,0	1/1:114:1,113:1:36:113:4027:-358.097,-30.7191,0	0/1:139:82,57:82:2944:57:2048:-142.027,0,-223.35	1/1:84:0,84:0:0:84:3007:-270.814,-25.2865,0	1/1:15:0,15:0:0:15:528:-47.8479,-4.51545,0	1/1:139:0,139:0:0:139:4957:-446.051,-41.8432,0	1/1:65:0,65:0:0:65:2332:-209.917,-19.567,0	1/1:153:0,153:0:0:153:5475:-491.745,-46.0576,0	0/1:97:47,50:47:1675:50:1787:-131.042,0,-121.837	1/1:64:0,64:0:0:64:2266:-204.098,-19.2659,0	0/1:92:50,42:50:1761:42:1490:-106.575,0,-131.074	0/1:145:77,67:77:2724:67:2360:-168.403,0,-201.69	0/1:38:16,22:16:572:22:775:-57.9934,0,-40.3743	0/1:79:36,43:36:1296:43:1517:-113.012,0,-93.1626	1/1:58:0,58:0:0:58:2043:-184.096,-17.4597,0	0/1:74:43,31:43:1529:31:1108:-77.7195,0,-115.625	0/1:117:55,62:55:1972:62:2217:-163.479,0,-142.534	0/1:58:39,19:39:1392:19:680:-44.045,0,-108.119	1/1:56:0,56:0:0:56:1984:-178.447,-16.8577,0	1/1:95:1,94:1:36:94:3355:-297.421,-24.9996,0
chr06	34234193	.	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chr06	34302150	.	G	A	22647.3	PASS	AB=0.523963;ABP=13.8336;AC=48;AF=0.258065;AN=186;AO=1159;CIGAR=1X;DP=4690;DPB=4690;DPRA=0.997094;EPP=1551.11;EPPR=3191.48;GTI=1;LEN=1;MEANALT=1;MQM=59.9776;MQMR=59.9989;NS=93;NUMALT=1;ODDS=0.337799;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41385;QR=126054;RO=3531;RPL=1034;RPP=1551.11;RPPR=3191.48;RPR=125;RUN=1;SAF=1159;SAP=2519.75;SAR=0;SRF=3531;SRP=7670.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:17,10:17:612:10:356:-24.2534,0,-47.2856	0/1:25:14,11:14:481:11:396:-28.457,0,-36.0893	0/1:86:22,64:22:792:64:2292:-180.645,0,-45.7171	0/0:115:115,0:115:4064:0:0:0,-34.6184,-365.944	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:28:24,4:24:852:4:144:-4.88478,0,-68.5715	0/1:30:15,15:15:540:15:534:-39.3628,0,-39.9056	0/0:27:25,2:25:892:2:72:0,-1.29109,-73.763	0/1:84:46,38:46:1652:38:1356:-97.054,0,-123.682	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7641	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/1:29:20,9:20:707:9:320:-20.4125,0,-55.2247	0/1:48:29,19:29:1036:19:680:-47.0797,0,-79.1045	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:25:6,19:6:216:19:684:-54.3646,0,-12.2648	0/1:116:56,60:56:2004:60:2148:-158.668,0,-145.714	0/0:77:77,0:77:2748:0:0:0,-23.1793,-247.563	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/1:82:40,42:40:1432:42:1489:-109.618,0,-104.493	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:37:22,15:22:775:15:524:-36.3502,0,-58.9331	0/0:113:112,1:112:4016:1:36:0,-30.4181,-358.03	0/1:155:73,82:73:2615:82:2912:-215.655,0,-188.937	0/1:20:9,11:9:315:11:396:-29.9621,0,-22.6666	0/1:101:50,51:50:1783:51:1813:-133.045,0,-130.348	0/1:60:32,28:32:1140:28:1000:-72.2536,0,-84.8474	0/1:40:26,14:26:928:14:500:-33.295,0,-71.7971	.:.:.:.:.:.:.:.	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:123:64,59:64:2266:59:2106:-152.782,0,-167.173	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:35:23,12:23:809:12:426:-28.1413,0,-62.5923	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:73:25,48:25:900:48:1728:-133.83,0,-59.3458	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:46:18,28:18:644:28:998:-76.2868,0,-44.4432	0/1:30:13,17:13:468:17:608:-46.0211,0,-33.4287	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:59:26,33:26:924:33:1184:-89.1075,0,-65.7169	0/0:82:82,0:82:2899:0:0:0,-24.6845,-261.142	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:69:32,37:32:1152:37:1328:-99.0512,0,-83.2191	0/0:96:96,0:96:3433:0:0:0,-28.8989,-309.182	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	0/0:67:67,0:67:2371:0:0:0,-20.169,-213.646	0/1:16:9,7:9:309:7:248:-17.8477,0,-23.3242	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:79:33,46:33:1180:46:1638:-123.904,0,-82.7267	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:50:25,25:25:892:25:900:-66.2695,0,-65.5482	0/0:68:66,2:66:2335:2:72:0,-13.6333,-203.571	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:134:134,0:134:4792:0:0:0,-40.338,-431.437	0/0:52:51,1:51:1828:1:36:0,-12.0553,-161.203	0/1:37:12,25:12:432:25:892:-69.4616,0,-28.0831	0/1:38:9,29:9:320:29:1026:-81.2127,0,-17.7032	0/0:87:85,2:85:3048:2:72:0,-19.3529,-267.713	0/0:92:88,4:88:3145:4:144:0,-14.3811,-269.96	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/1:22:8,14:8:288:14:489:-37.7162,0,-19.6447	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.92	0/1:79:34,45:34:1220:45:1605:-120.957,0,-86.3254	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/0:101:101,0:101:3615:0:0:0,-30.404,-325.554	0/1:43:24,19:24:860:19:684:-48.946,0,-64.7775	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.985	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/1:38:12,26:12:432:26:928:-72.3991,0,-27.7821	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	0/1:75:39,36:39:1386:36:1288:-93.6463,0,-102.46	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:38:21,17:21:729:17:604:-43.2515,0,-54.4896	0/0:54:54,0:54:1892:0:0:0,-16.2556,-170.553	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:62:33,29:33:1168:29:1044:-75.6109,0,-86.7634	0/1:50:15,35:15:540:35:1256:-98.2938,0,-33.885	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.242	0/0:88:88,0:88:3143:0:0:0,-26.4906,-283.095
chr06	34303228	.	T	C	109202	PASS	AB=0.507592;ABP=4.62595;AC=143;AF=0.760638;AN=188;AO=5201;CIGAR=1X;DP=6813;DPB=6813;DPRA=14.7891;EPP=11253.5;EPPR=3470.9;GTI=0;LEN=1;MEANALT=1.03261;MQM=59.9419;MQMR=59.9627;NS=94;NUMALT=1;ODDS=6.19;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184882;QR=57122;RO=1609;RPL=5;RPP=11253.5;RPPR=3470.9;RPR=5196;RUN=1;SAF=0;SAP=11296.8;SAR=5201;SRF=0;SRP=3496.91;SRR=1609;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:10,3:10:356:3:108:-6.14357,0,-28.4679	0/1:95:48,47:48:1712:47:1645:-119.735,0,-125.768	0/1:75:34,41:34:1199:41:1464:-109.479,0,-85.6375	1/1:103:2,101:2:72:101:3612:-318.446,-24.1694,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:94:0,94:0:0:94:3313:-298.388,-28.2968,0	0/1:60:33,27:33:1184:27:936:-66.4893,0,-88.6154	1/1:45:0,45:0:0:45:1592:-143.545,-13.5464,0	0/1:129:76,53:76:2701:53:1896:-132.076,0,-204.501	0/1:52:22,30:22:761:30:1063:-80.3273,0,-53.1533	1/1:68:0,68:0:0:68:2386:-214.996,-20.47,0	1/1:64:0,64:0:0:64:2236:-201.469,-19.2659,0	0/1:70:36,34:36:1276:34:1197:-86.9613,0,-94.071	0/1:68:43,25:43:1494:25:883:-59.3166,0,-114.282	1/1:45:0,45:0:0:45:1583:-142.758,-13.5464,0	1/1:84:0,84:0:0:84:2973:-267.803,-25.2865,0	1/1:46:0,46:0:0:46:1620:-146.086,-13.8474,0	0/1:66:28,38:28:984:38:1337:-100.76,0,-69.0054	0/1:99:56,43:56:1968:43:1536:-108.731,0,-147.591	1/1:94:0,94:0:0:94:3356:-302.238,-28.2968,0	1/1:47:0,47:0:0:47:1646:-148.426,-14.1484,0	0/1:26:14,12:14:500:12:428:-31.032,0,-37.5094	1/1:69:0,69:0:0:69:2454:-221.114,-20.7711,0	0/1:46:36,10:36:1296:10:356:-18.5339,0,-103.097	1/1:224:1,223:1:36:223:7989:-715.43,-63.8324,0	0/1:107:43,64:43:1517:64:2300:-175.051,0,-104.611	0/1:32:18,14:18:648:14:496:-35.3413,0,-49.0189	0/1:130:47,83:47:1684:83:2971:-228.486,0,-112.713	0/1:112:65,47:65:2293:47:1692:-118.851,0,-172.915	0/1:54:27,27:27:959:27:964:-70.8212,0,-70.3698	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0748,-0.90309,0	0/1:186:68,118:68:2411:118:4183:-320.652,0,-161.255	1/1:136:0,136:0:0:136:4804:-432.496,-40.9401,0	0/1:67:23,44:23:797:44:1539:-118.63,0,-51.8769	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:298:152,146:152:5415:146:5226:-380.77,0,-397.776	1/1:89:0,89:0:0:89:3135:-282.376,-26.7917,0	0/1:62:19,42:19:680:42:1491:-115.761,0,-42.8066	0/1:70:35,35:35:1248:35:1245:-91.2806,0,-91.5528	1/1:66:0,66:0:0:66:2336:-210.498,-19.868,0	1/1:59:0,59:0:0:59:2107:-189.898,-17.7608,0	0/1:42:19,23:19:676:23:820:-61.4793,0,-48.5247	1/1:122:0,122:0:0:122:4344:-391.112,-36.7257,0	1/1:105:0,105:0:0:105:3746:-337.34,-31.6082,0	0/1:102:62,40:62:2216:40:1428:-98.1125,0,-169	1/1:112:0,112:0:0:112:3987:-359.022,-33.7154,0	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	0/1:30:15,14:15:532:14:500:-36.3679,0,-39.2086	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	0/1:67:27,40:27:944:40:1415:-107.46,0,-65.1051	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:75:28,47:28:1004:47:1680:-128.91,0,-68.0986	1/1:152:1,151:1:36:151:5352:-478.207,-42.1583,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:144:0,144:0:0:144:5151:-463.73,-43.3483,0	1/1:134:2,132:2:68:132:4707:-417.334,-33.8803,0	0/1:110:58,52:58:2068:52:1847:-133.396,0,-153.278	0/1:31:18,13:18:648:13:464:-32.7656,0,-49.32	1/1:112:2,110:2:72:110:3898:-344.178,-26.8786,0	1/1:121:1,119:1:36:119:4251:-379.171,-32.8852,0	1/1:47:0,47:0:0:47:1671:-150.673,-14.1484,0	1/1:69:0,69:0:0:69:2438:-219.664,-20.7711,0	1/1:106:0,106:0:0:106:3739:-336.712,-31.9092,0	0/1:28:20,8:20:716:8:288:-17.8386,0,-56.3389	1/1:42:0,42:0:0:42:1498:-135.1,-12.6433,0	0/1:88:35,53:35:1244:53:1888:-143.706,0,-85.774	1/1:69:0,69:0:0:69:2440:-219.854,-20.7711,0	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0	0/1:47:28,19:28:1000:19:680:-47.3808,0,-76.167	1/1:98:0,98:0:0:98:3499:-315.12,-29.5009,0	1/1:28:0,28:0:0:28:983:-88.6946,-8.42884,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:112:1,111:1:32:111:3960:-353.389,-30.516,0	0/1:99:43,56:43:1528:56:1992:-149.752,0,-108.011	1/1:75:1,74:1:36:74:2629:-233.258,-18.979,0	0/1:83:47,36:47:1666:36:1266:-89.2534,0,-125.24	0/1:123:59,64:59:2104:64:2282:-168.616,0,-152.603	0/1:36:15,21:15:540:21:752:-57.1692,0,-38.0995	0/1:81:47,34:47:1684:34:1187:-82.7479,0,-127.464	1/1:50:0,50:0:0:50:1750:-157.781,-15.0515,0	0/1:49:26,23:26:919:23:824:-59.7328,0,-68.2757	0/1:123:52,71:52:1814:71:2512:-189.304,0,-126.513	0/1:77:50,27:50:1772:27:972:-64.6186,0,-136.498	1/1:63:1,62:1:36:62:2212:-195.746,-15.3666,0	1/1:106:0,106:0:0:106:3761:-338.69,-31.9092,0
chr06	34303298	.	C	G	161298	PASS	AB=0.538126;ABP=43.5776;AC=143;AF=0.760638;AN=188;AO=6024;CIGAR=1X;DP=7530;DPB=7530;DPRA=80.957;EPP=1703.56;EPPR=422.023;GTI=3;LEN=1;MEANALT=1.06452;MQM=59.6414;MQMR=59.6473;NS=94;NUMALT=1;ODDS=0.165471;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215239;QR=53467;RO=1500;RPL=1926;RPP=1703.56;RPPR=422.023;RPR=4098;RUN=1;SAF=6024;SAP=13084;SAR=0;SRF=1500;SRP=3260.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:11,20:11:375:20:720:-55.6053,0,-24.7459	0/1:44:15,29:15:536:29:1031:-79.8123,0,-35.3295	0/1:106:46,60:46:1632:60:2152:-162.014,0,-115.253	1/1:215:0,215:0:0:215:7647:-686.96,-64.7215,0	1/1:23:0,23:0:0:23:824:-74.4764,-6.92369,0	1/1:28:0,28:0:0:28:1000:-90.3072,-8.42884,0	1/1:77:0,77:0:0:77:2751:-247.825,-23.1793,0	0/1:96:36,60:36:1279:60:2156:-165.4,0,-86.5136	1/1:78:1,77:1:36:77:2712:-240.699,-19.8821,0	0/1:81:51,30:51:1824:30:1080:-73.0431,0,-139.271	0/1:42:23,19:23:828:19:680:-48.8853,0,-62.2009	1/1:84:0,84:0:0:84:2972:-267.665,-25.2865,0	1/1:81:0,81:0:0:81:2882:-259.504,-24.3834,0	0/1:39:18,21:18:644:21:756:-56.5717,0,-46.544	0/1:66:31,35:31:1116:35:1260:-93.8375,0,-80.8791	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:18:0,18:0:0:18:648:-58.6346,-5.41854,0	1/1:23:0,23:0:0:23:824:-74.2752,-6.92369,0	0/1:18:5,13:5:180:13:468:-37.0329,0,-11.1335	0/1:128:56,72:56:2000:72:2571:-193.088,0,-141.652	1/1:171:0,171:0:0:171:6102:-549.158,-51.4761,0	1/1:69:0,69:0:0:69:2480:-223.222,-20.7711,0	0/1:100:51,49:51:1811:49:1752:-127.768,0,-133.163	1/1:17:0,17:0:0:17:604:-54.6814,-5.11751,0	0/1:67:35,32:35:1252:32:1152:-83.8165,0,-92.8069	1/1:230:0,230:0:0:230:8226:-740.34,-69.2369,0	0/1:219:98,121:98:3508:121:4336:-324.465,0,-249.87	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2836	0/1:209:111,98:111:3959:98:3502:-252.472,0,-293.516	0/1:64:24,40:24:848:40:1432:-109.842,0,-57.3609	0/1:149:68,80:68:2424:80:2857:-212.493,0,-173.536	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.82813,-0.60206,0	0/1:240:106,134:106:3786:134:4783:-358.372,0,-268.678	1/1:88:0,88:0:0:88:3145:-282.106,-26.4906,0	0/1:37:22,15:22:792:15:536:-37.4218,0,-60.4512	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:100:36,64:36:1292:64:2274:-174.818,0,-86.4762	1/1:31:0,31:0:0:31:1116:-100.746,-9.33193,0	0/1:90:40,49:40:1428:49:1755:-131.063,0,-101.652	0/1:58:31,27:31:1108:27:954:-68.711,0,-82.5689	1/1:54:0,54:0:0:54:1922:-172.882,-16.2556,0	1/1:117:0,117:0:0:117:4174:-375.782,-35.2205,0	0/1:85:37,48:37:1332:48:1706:-128.224,0,-94.5336	1/1:170:0,169:0:0:169:6043:-543.152,-50.8741,0	1/1:76:1,75:1:36:75:2692:-238.918,-19.28,0	0/1:76:38,38:38:1368:38:1360:-99.8118,0,-100.529	1/1:137:1,136:1:36:136:4884:-436.11,-37.6428,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:145:0,145:0:0:145:5177:-465.975,-43.6494,0	0/1:50:20,30:20:720:30:1065:-81.0749,0,-50.0773	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:135:56,79:56:1991:79:2832:-214.464,0,-138.814	1/1:33:0,33:0:0:33:1180:-106.503,-9.93399,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:8:0,8:0:0:8:288:-26.265,-2.40824,0	0/1:94:51,43:51:1819:43:1510:-107.878,0,-135.637	1/1:83:0,83:0:0:83:2980:-268.416,-24.9855,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:232:0,232:0:0:232:8286:-745.732,-69.839,0	1/1:169:0,169:0:0:169:6038:-543.285,-50.8741,0	0/1:45:17,28:17:604:28:1000:-76.769,0,-41.135	0/1:58:23,35:23:811:35:1248:-95.1514,0,-55.8359	1/1:151:5,146:5:171:146:5207:-452.873,-29.7301,0	1/1:140:1,138:1:36:138:4952:-442.218,-38.6047,0	1/1:28:0,28:0:0:28:994:-89.7115,-8.42884,0	1/1:59:0,59:0:0:59:2104:-189.565,-17.7608,0	1/1:40:0,40:0:0:40:1435:-129.446,-12.0412,0	0/1:15:7,8:7:252:8:276:-20.6598,0,-18.5135	1/1:129:0,129:0:0:129:4632:-416.994,-38.8329,0	0/1:117:51,66:51:1787:66:2359:-177.323,0,-125.869	1/1:128:0,128:0:0:128:4596:-413.766,-38.5318,0	1/1:206:0,205:0:0:205:7341:-660.274,-61.7112,0	0/1:45:17,28:17:600:28:987:-75.4575,0,-40.781	1/1:93:4,88:4:144:88:3155:-270.831,-14.741,0	1/1:14:0,14:0:0:14:489:-44.3391,-4.21442,0	1/1:83:0,83:0:0:83:2967:-267.152,-24.9855,0	1/1:80:0,80:0:0:80:2864:-257.978,-24.0824,0	1/1:214:1,213:1:36:213:7559:-676.622,-60.8221,0	0/1:60:25,35:25:900:35:1226:-92.5759,0,-63.2592	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	0/1:41:18,23:18:626:23:820:-61.7779,0,-44.3187	0/1:131:68,63:68:2402:63:2260:-164.217,0,-176.996	0/1:28:12,16:12:432:16:576:-43.5552,0,-30.7924	0/1:67:27,40:27:964:40:1440:-109.729,0,-66.8915	1/1:72:0,72:0:0:72:2584:-232.8,-21.6742,0	0/1:26:14,12:14:491:12:432:-31.3898,0,-36.6943	0/1:71:40,31:40:1427:31:1108:-78.6426,0,-107.304	0/1:49:29,20:29:1032:20:716:-50.0149,0,-78.4407	1/1:192:3,189:3:108:189:6762:-598.559,-47.7226,0	1/1:91:0,91:0:0:91:3250:-292.712,-27.3937,0
chr06	34303314	.	TGA	CGA,CGG	150333	PASS	AB=0.524051,0.471519;ABP=18.8868,25.2748;AC=143,45;AF=0.760638,0.239362;AN=188;AO=5820,1507;CIGAR=1X2M,1X1M1X;DP=7349;DPB=7349.33;DPRA=79.0108,1.06892;EPP=12641,3275.42;EPPR=9.52472;GTI=3;LEN=1,3;MEANALT=1.75269,2.23077;MQM=59.6881,59.6682;MQMR=60;NS=94;NUMALT=2;ODDS=0.882154;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=13.5,13.5;PQR=0;PRO=0;QA=200850,51296;QR=108;RO=3;RPL=5819,1507;RPP=12632.3,3275.42;RPPR=9.52472;RPR=1,0;RUN=1,1;SAF=5819,1507;SAP=12632.3,3275.42;SAR=1,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,18,12:0:0:18,12:629,423:-85.9568,-34.7936,-29.375,-51.5143,0,-47.902	1/2:46:0,31,15:0:0:31,15:1030,525:-126.366,-43.0643,-33.7324,-83.6457,0,-79.1303	1/2:103:0,55,47:0:0:55,47:1908,1569:-282.056,-126.984,-110.427,-155.052,0,-140.904	1/1:212:0,212,0:0:0:212,0:7405,0:-666.226,-63.8184,0,-666.226,-63.8184,-666.226	1/1:20:0,20,0:0:0:20,0:668,0:-60.4246,-6.0206,0,-60.4246,-6.0206,-60.4246	1/1:27:0,27,0:0:0:27,0:931,0:-84.0925,-8.12781,0,-84.0925,-8.12781,-84.0925	1/1:76:0,76,0:0:0:76,0:2637,0:-237.567,-22.8783,0,-237.567,-22.8783,-237.567	1/2:98:0,60,37:0:0:60,37:2096,1291:-275.539,-105.041,-86.9795,-170.536,0,-159.398	1/1:75:0,74,1:0:0:74,1:2493,28:-224.315,-22.2762,0,-222.097,-19.7775,-221.796	1/2:77:0,27,50:0:0:27,50:942,1726:-217.181,-140.564,-132.436,-76.9641,0,-61.9126	1/2:42:0,19,23:0:0:19,23:651,799:-118.143,-65.3046,-59.5851,-53.1834,0,-46.2597	1/1:80:0,79,0:0:0:79,0:2650,0:-238.108,-23.7814,0,-238.108,-23.7814,-238.108	1/1:74:0,74,0:0:0:74,0:2509,0:-225.998,-22.2762,0,-225.998,-22.2762,-225.998	1/2:37:0,20,17:0:0:20,17:710,557:-103.152,-45.3226,-39.302,-58.1696,0,-53.0521	1/2:65:0,34,30:0:0:34,30:1180,1023:-178.91,-82.985,-72.7499,-95.9099,0,-86.879	1/1:47:0,47,0:0:0:47,0:1575,0:-142.033,-14.1484,0,-142.033,-14.1484,-142.033	1/1:17:0,17,0:0:0:17,0:577,0:-52.2405,-5.11751,0,-52.2405,-5.11751,-52.2405	1/1:23:0,23,0:0:0:23,0:786,0:-70.8435,-6.92369,0,-70.8435,-6.92369,-70.8435	1/2:16:0,11,5:0:0:11,5:357,166:-42.5627,-13.761,-10.4497,-29.1313,0,-27.6261	1/2:128:1,68,59:1:36:68,59:2392,2018:-355.231,-160.825,-143.292,-191.756,0,-176.933	1/1:172:0,172,0:0:0:172,0:5928,0:-533.457,-51.7772,0,-533.457,-51.7772,-533.457	1/1:64:0,64,0:0:0:64,0:2225,0:-200.449,-19.2659,0,-200.449,-19.2659,-200.449	1/2:99:0,46,53:0:0:46,53:1594,1801:-275.871,-146.409,-132.562,-129.805,0,-113.85	1/1:17:0,17,0:0:0:17,0:577,0:-52.2471,-5.11751,0,-52.2471,-5.11751,-52.2471	1/2:67:0,31,36:0:0:31,36:1101,1257:-192.213,-102.503,-93.1714,-90.0618,0,-79.2247	1/1:224:0,224,0:0:0:224,0:7739,0:-696.554,-67.4307,0,-696.554,-67.4307,-696.554	1/2:214:0,116,98:0:0:116,98:4038,3331:-598.782,-270.494,-235.575,-328.631,0,-299.13	1/2:22:0,11,11:0:0:11,11:376,368:-60.6437,-30.1237,-26.8124,-30.858,0,-27.5466	1/2:209:0,98,110:0:0:98,110:3434,3777:-586.187,-306.767,-277.266,-279.516,0,-246.403	1/2:63:0,39,24:0:0:39,24:1362,790:-174.973,-64.1731,-52.4329,-111.137,0,-103.912	1/2:144:0,76,68:0:0:76,68:2653,2333:-405.541,-189.75,-166.872,-216.137,0,-195.667	1/1:5:0,5,0:0:0:5,0:171,0:-15.7255,-1.50515,0,-15.7255,-1.50515,-15.7255	1/1:18:0,18,0:0:0:18,0:620,0:-56.1201,-5.41854,0,-56.1201,-5.41854,-56.1201	1/1:1:0,1,0:0:0:1,0:32,0:-3.19931,-0.30103,0,-3.19931,-0.30103,-3.19931	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:2:0,2,0:0:0:2,0:63,0:-5.97456,-0.60206,0,-5.97456,-0.60206,-5.97456	1/2:234:0,126,107:0:0:126,107:4268,3632:-640.706,-294.668,-256.738,-346.166,0,-313.955	1/1:88:0,88,0:0:0:88,0:3070,0:-276.113,-26.4906,0,-276.113,-26.4906,-276.113	1/2:36:0,13,23:0:0:13,23:432,806:-100.849,-65.9196,-62.0062,-35.2678,0,-28.3442	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:99:0,63,36:0:0:63,36:2217,1234:-281.002,-100.519,-81.5538,-180.829,0,-169.992	1/1:31:0,31,0:0:0:31,0:1039,0:-93.8065,-9.33193,0,-93.8065,-9.33193,-93.8065	1/2:88:0,47,39:0:0:47,39:1644,1325:-241.285,-107.542,-93.3937,-133.831,0,-122.091	1/2:60:0,27,33:0:0:27,33:913,1120:-165.157,-91.1519,-83.0241,-74.3438,0,-64.4098	1/1:50:0,50,0:0:0:50,0:1670,0:-150.397,-15.0515,0,-150.397,-15.0515,-150.397	1/1:113:1,112,0:1:36:112,0:3903,0:-347.855,-30.4181,0,-348.156,-33.7154,-351.094	1/2:83:0,45,38:0:0:45,38:1562,1299:-232.673,-105.705,-92.1586,-127.312,0,-115.873	1/1:165:0,163,0:0:0:163,0:5626,0:-505.877,-49.0679,0,-505.877,-49.0679,-505.877	1/1:71:0,70,0:0:0:70,0:2375,0:-213.644,-21.0721,0,-213.644,-21.0721,-213.644	1/2:73:0,34,38:0:0:34,38:1174,1277:-198.824,-103.44,-93.2048,-95.3851,0,-83.946	1/1:137:0,136,1:0:0:136,1:4730,36:-425.5,-40.9401,0,-422.563,-37.6428,-422.262	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:140:0,140,0:0:0:140,0:4788,0:-431.031,-42.1442,0,-431.031,-42.1442,-431.031	1/2:49:0,29,19:0:0:29,19:1027,673:-138.426,-54.8176,-46.0877,-83.603,0,-77.8834	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:134:0,77,55:0:0:77,55:2705,1883:-373.042,-152.882,-129.703,-220.209,0,-203.652	1/1:34:0,34,0:0:0:34,0:1147,0:-103.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chr06	34303434	.	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chr06	34306983	.	C	T	156037	PASS	AB=0.4995;ABP=3.01899;AC=142;AF=0.755319;AN=188;AO=7300;CIGAR=1X;DP=9324;DPB=9324;DPRA=25.0538;EPP=15854.8;EPPR=4391.56;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.7385;MQMR=59.9466;NS=94;NUMALT=1;ODDS=11.4422;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261159;QR=71914;RO=2021;RPL=7300;RPP=15854.8;RPPR=4391.56;RPR=0;RUN=1;SAF=7300;SAP=15854.8;SAR=0;SRF=2021;SRP=4391.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/1:112:56,56:56:1985:56:1990:-145.654,0,-145.207	0/1:118:49,69:49:1738:69:2467:-186.277,0,-121.181	1/1:167:0,167:0:0:167:5979:-538.127,-50.272,0	1/1:68:0,68:0:0:68:2416:-217.694,-20.47,0	1/1:41:0,41:0:0:41:1476:-133.075,-12.3422,0	1/1:199:1,198:1:36:198:7041:-630.042,-56.3067,0	0/1:139:75,64:75:2658:64:2279:-163.386,0,-197.623	1/1:96:0,96:0:0:96:3428:-308.585,-28.8989,0	0/1:128:66,62:66:2360:62:2210:-160.575,0,-174.121	0/1:50:18,32:18:648:32:1134:-87.3136,0,-43.6004	1/1:62:0,62:0:0:62:2212:-199.28,-18.6639,0	1/1:42:0,42:0:0:42:1512:-136.329,-12.6433,0	0/1:91:48,43:48:1690:43:1540:-111.498,0,-124.991	0/1:48:23,25:23:820:25:891:-66.0593,0,-59.6731	1/1:37:1,36:1:36:36:1287:-112.506,-7.53984,0	1/1:61:0,61:0:0:61:2188:-197.157,-18.3628,0	1/1:47:0,47:0:0:47:1684:-151.815,-14.1484,0	0/1:29:19,10:19:658:10:356:-23.6227,0,-50.8114	0/1:167:86,81:86:3076:81:2900:-210.956,0,-226.772	1/1:94:0,94:0:0:94:3371:-303.603,-28.2968,0	1/1:165:0,165:0:0:165:5936:-534.337,-49.67,0	0/1:36:17,19:17:599:19:680:-50.6921,0,-43.401	1/1:120:0,120:0:0:120:4289:-386.15,-36.1236,0	0/1:91:50,40:50:1788:40:1434:-101.587,0,-133.75	1/1:262:0,262:0:0:262:9358:-842.156,-78.8699,0	0/1:202:83,119:83:2951:119:4260:-322.767,0,-205.016	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:238:130,108:130:4616:108:3848:-274.869,0,-343.96	0/1:204:75,129:75:2662:129:4625:-354.999,0,-178.416	0/1:113:53,60:53:1896:60:2152:-159.907,0,-136.902	1/1:7:0,7:0:0:7:252:-23.0258,-2.10721,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:163:70,93:70:2508:93:3316:-249.576,0,-176.904	1/1:248:0,248:0:0:248:8849:-795.988,-74.6554,0	0/1:63:37,26:37:1323:26:936:-65.5946,0,-100.406	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:209:104,105:104:3704:105:3751:-274.863,0,-270.649	1/1:53:0,53:0:0:53:1876:-169.109,-15.9546,0	0/1:123:50,73:50:1796:73:2601:-197.22,0,-124.896	0/1:42:17,25:17:604:25:900:-68.6774,0,-42.0473	1/1:50:0,50:0:0:50:1800:-162.281,-15.0515,0	1/1:71:0,71:0:0:71:2541:-228.845,-21.3731,0	0/1:56:30,26:30:1065:26:932:-67.3412,0,-79.3021	1/1:198:0,198:0:0:198:7071:-636.379,-59.6039,0	1/1:97:0,97:0:0:97:3477:-313.127,-29.1999,0	0/1:134:82,50:82:2923:50:1800:-122.18,0,-223.191	1/1:247:0,247:0:0:247:8859:-797.166,-74.3544,0	0/1:27:9,18:9:320:18:648:-50.506,0,-21.0145	1/1:237:1,236:1:36:236:8463:-757.906,-67.7458,0	0/1:85:43,42:43:1528:42:1508:-110.427,0,-112.226	0/1:18:13,5:13:460:5:180:-11.1335,0,-36.3168	0/1:116:75,41:75:2654:41:1476:-98.2163,0,-204.187	1/1:3:0,3:0:0:3:108:-10.0748,-0.90309,0	0/1:15:9,6:9:324:6:212:-14.9092,0,-24.9904	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:130:74,56:74:2647:56:2008:-141.421,0,-199.331	1/1:125:3,122:3:104:122:4367:-383.492,-27.9323,0	0/1:9:6,3:6:212:3:108:-7.36548,0,-16.7155	1/1:130:0,130:0:0:130:4652:-418.807,-39.1339,0	1/1:234:1,233:1:36:233:8327:-745.701,-66.8427,0	0/1:103:47,56:47:1658:56:1975:-147.015,0,-118.5	0/1:54:36,18:36:1275:18:644:-42.0288,0,-98.7905	1/1:139:2,137:2:72:137:4902:-434.457,-35.0064,0	1/1:223:2,221:2:68:221:7910:-705.445,-60.672,0	1/1:28:0,28:0:0:28:993:-89.6814,-8.42884,0	1/1:100:0,100:0:0:100:3587:-322.951,-30.103,0	1/1:70:1,69:1:36:69:2480:-219.848,-17.4738,0	0/1:59:29,30:29:1036:30:1060:-77.9457,0,-75.7931	1/1:94:0,94:0:0:94:3352:-301.648,-28.2968,0	0/1:57:25,32:25:892:32:1144:-86.1102,0,-63.441	1/1:169:0,169:0:0:169:6051:-544.691,-50.8741,0	1/1:235:0,235:0:0:235:8439:-759.491,-70.7421,0	0/1:133:58,75:58:2061:75:2679:-201.204,0,-145.722	1/1:116:3,113:3:108:113:4017:-351.517,-24.8443,0	1/1:8:0,8:0:0:8:288:-26.2387,-2.40824,0	1/1:140:2,138:2:72:138:4948:-438.624,-35.3075,0	1/1:146:0,146:0:0:146:5244:-472.037,-43.9504,0	1/1:337:1,336:1:36:336:12003:-1076.43,-97.8488,0	0/1:106:53,53:53:1895:53:1906:-139.844,0,-138.906	1/1:43:0,43:0:0:43:1548:-139.607,-12.9443,0	0/1:70:36,34:36:1284:34:1224:-89.3945,0,-94.7913	0/1:111:55,56:55:1939:56:2005:-147.306,0,-141.359	0/1:40:26,14:26:919:14:504:-33.6392,0,-70.985	0/1:47:25,22:25:891:22:787:-56.9765,0,-66.3604	1/1:70:0,70:0:0:70:2511:-226.176,-21.0721,0	0/1:62:34,28:34:1211:28:1008:-72.3725,0,-90.6317	0/1:106:47,59:47:1688:59:2105:-157.807,0,-120.298	0/1:66:46,20:46:1632:20:716:-44.8993,0,-127.301	1/1:99:0,99:0:0:99:3544:-319.137,-29.802,0	1/1:73:0,73:0:0:73:2612:-235.059,-21.9752,0
chr06	34307077	.	TT	CG,TG	167815	PASS	AB=0.480066,0.518284;ABP=15.5633,13.5715;AC=142,44;AF=0.763441,0.236559;AN=186;AO=5943,1910;CIGAR=2X,1M1X;DP=7866;DPB=7866;DPRA=0,1.29473;EPP=12873.4,4150.52;EPPR=11.6962;GTI=0;LEN=2,1;MEANALT=1.68817,2.12727;MQM=59.6032,59.978;MQMR=60;NS=93;NUMALT=2;ODDS=0.131597;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=210147,68312;QR=131;RO=4;RPL=4,0;RPP=12873.4,4150.52;RPPR=11.6962;RPR=5939,1910;RUN=1,1;SAF=0,0;SAP=12908.1,4150.52;SAR=5943,1910;SRF=0;SRP=11.6962;SRR=4;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:55:1,21,33:1:25:21,33:751,1184:-155.671,-94.7355,-90.3595,-59.3954,0,-51.4054	1/2:57:0,35,22:0:0:35,22:1241,792:-166.067,-64.983,-54.447,-101.442,0,-94.8191	1/2:110:0,48,62:0:0:48,62:1681,2209:-317.162,-180.409,-165.96,-137.105,0,-118.442	1/1:136:0,136,0:0:0:136,0:4844,0:-436.108,-40.9401,0,-436.108,-40.9401,-436.108	1/1:58:0,57,1:0:0:57,1:2021,36:-181.803,-17.1587,0,-178.865,-13.8615,-178.564	1/1:69:0,69,0:0:0:69,0:2469,0:-222.438,-20.7711,0,-222.438,-20.7711,-222.438	1/1:133:0,133,0:0:0:133,0:4724,0:-425.217,-40.037,0,-425.217,-40.037,-425.217	1/2:117:0,57,60:0:0:57,60:2015,2148:-339.484,-175.526,-158.367,-164.313,0,-146.252	1/1:85:0,83,2:0:0:83,2:2926,72:-262.885,-24.9855,0,-257.01,-18.7508,-256.408	1/2:121:0,59,62:0:0:59,62:2083,2211:-350.21,-180.59,-162.83,-169.974,0,-151.31	1/2:69:0,31,38:0:0:31,38:1110,1350:-200.773,-110.36,-101.028,-90.7702,0,-79.3311	1/1:75:0,75,0:0:0:75,0:2649,0:-238.588,-22.5773,0,-238.588,-22.5773,-238.588	1/1:69:0,69,0:0:0:69,0:2438,0:-219.651,-20.7711,0,-219.651,-20.7711,-219.651	1/2:65:0,30,35:0:0:30,35:1063,1247:-188.58,-101.998,-92.9671,-86.9368,0,-76.4007	1/2:57:0,26,31:0:0:26,31:932,1097:-165.717,-89.7061,-81.8793,-76.3676,0,-67.0357	1/1:31:0,31,0:0:0:31,0:1105,0:-99.7534,-9.33193,0,-99.7534,-9.33193,-99.7534	1/1:50:0,50,0:0:0:50,0:1786,0:-161.02,-15.0515,0,-161.02,-15.0515,-161.02	1/1:32:0,32,0:0:0:32,0:1146,0:-103.442,-9.63296,0,-103.442,-9.63296,-103.442	1/2:29:0,15,14:0:0:15,14:538,496:-84.6334,-40.7598,-36.2444,-44.2298,0,-40.0154	1/2:204:0,104,100:0:0:104,100:3697,3566:-592.308,-291.042,-259.735,-301.622,0,-271.519	1/1:100:0,100,0:0:0:100,0:3512,0:-315.98,-30.103,0,-315.98,-30.103,-315.98	1/1:144:0,144,0:0:0:144,0:5072,0:-456.623,-43.3483,0,-456.623,-43.3483,-456.623	1/2:69:0,29,40:0:0:29,40:1000,1440:-199.079,-117.857,-109.127,-81.5738,0,-69.5326	1/1:133:0,130,3:0:0:130,3:4547,108:-409.013,-39.1339,0,-400.2,-29.9618,-399.297	1/2:54:0,28,26:0:0:28,26:960,928:-153.909,-76.0115,-67.5826,-78.248,0,-70.4212	1/1:353:0,352,1:0:0:352,1:12508,36:-1124.82,-105.963,0,-1121.88,-102.665,-1121.58	1/2:188:0,96,90:0:0:96,90:3404,3221:-539.972,-262.658,-233.759,-277.31,0,-250.218	1/2:22:0,13,9:0:0:13,9:460,324:-64.2536,-26.7966,-22.8832,-37.8143,0,-35.105	1/2:257:0,143,113:0:0:143,113:5053,4044:-741.387,-329.881,-286.833,-411.611,0,-377.594	1/2:143:0,78,64:0:0:78,64:2763,2281:-411.092,-186.033,-162.552,-225.162,0,-205.896	1/2:95:0,51,44:0:0:51,44:1792,1580:-275.044,-129.246,-113.894,-146.153,0,-132.908	1/1:19:0,19,0:0:0:19,0:676,0:-61.1621,-5.71957,0,-61.1621,-5.71957,-61.1621	1/1:13:0,13,0:0:0:13,0:449,0:-40.7334,-3.91339,0,-40.7334,-3.91339,-40.7334	1/1:11:0,11,0:0:0:11,0:386,0:-35.0756,-3.31133,0,-35.0756,-3.31133,-35.0756	1/1:9:0,9,0:0:0:9,0:320,0:-29.1426,-2.70927,0,-29.1426,-2.70927,-29.1426	1/1:14:0,14,0:0:0:14,0:494,0:-44.7849,-4.21442,0,-44.7849,-4.21442,-44.7849	1/2:189:0,82,107:0:0:82,107:2903,3832:-549.329,-312.866,-288.182,-236.818,0,-204.608	1/1:51:0,51,0:0:0:51,0:1785,0:-160.796,-15.3525,0,-160.796,-15.3525,-160.796	1/2:76:0,26,50:0:0:26,50:908,1792:-220.365,-146.511,-138.684,-74.2062,0,-59.1547	.:.:.:.:.:.:.:.	1/2:136:0,75,61:0:0:75,61:2658,2192:-395.609,-179.183,-156.605,-216.783,0,-198.42	1/1:35:0,35,0:0:0:35,0:1233,0:-111.135,-10.5361,0,-111.135,-10.5361,-111.135	1/2:128:0,49,79:0:0:49,79:1710,2819:-369.236,-230.168,-215.417,-139.42,0,-115.639	1/2:60:0,31,29:0:0:31,29:1114,1040:-176.065,-85.1845,-75.8526,-91.2397,0,-82.5098	1/1:62:0,62,0:0:0:62,0:2177,0:-196.164,-18.6639,0,-196.164,-18.6639,-196.164	1/1:153:0,152,1:0:0:152,1:5381,36:-484.037,-45.7566,0,-481.1,-42.4593,-480.799	1/2:120:0,62,58:0:0:62,58:2194,2069:-347.631,-169.019,-150.355,-178.966,0,-161.507	1/1:66:0,65,1:0:0:65,1:2311,36:-207.883,-19.567,0,-204.945,-16.2697,-204.644	1/1:86:0,86,0:0:0:86,0:3031,0:-273.004,-25.8886,0,-273.004,-25.8886,-273.004	1/2:141:0,65,76:0:0:65,76:2293,2724:-409.222,-222.525,-202.958,-187.052,0,-164.174	1/1:189:0,178,9:0:0:178,9:6315,324:-567.864,-53.5833,0,-541.427,-27.1016,-538.718	1/2:13:0,5,8:0:0:5,8:180,288:-38.5463,-23.8592,-22.354,-15.0469,0,-12.6387	1/1:105:0,104,0:0:0:104,0:3717,0:-334.446,-31.3071,0,-334.446,-31.3071,-334.446	1/2:74:0,40,34:0:0:40,34:1384,1224:-212.685,-100.232,-88.1908,-112.806,0,-102.571	1/2:21:0,7,14:0:0:7,14:252,504:-62.0456,-41.4837,-39.3765,-20.9217,0,-16.7073	1/2:81:0,35,46:0:0:35,46:1247,1635:-235.034,-133.401,-122.865,-101.989,0,-88.1411	1/1:44:0,42,2:0:0:42,2:1499,72:-134.842,-12.6433,0,-128.967,-6.4086,-128.365	1/2: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chr06	34307086	.	C	T	124332	PASS	AB=0.479833;ABP=15.7099;AC=142;AF=0.763441;AN=186;AO=5878;CIGAR=1X;DP=7775;DPB=7775;DPRA=0;EPP=12671.6;EPPR=4107.1;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.614;MQMR=60;NS=93;NUMALT=1;ODDS=0.173946;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209676;QR=67954;RO=1894;RPL=11;RPP=12671.6;RPPR=4107.1;RPR=5867;RUN=1;SAF=0;SAP=12766.9;SAR=5878;SRF=0;SRP=4115.78;SRR=1894;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:34,21:34:1220:21:752:-51.4496,0,-93.5502	0/1:57:22,35:22:788:35:1252:-95.81,0,-54.0861	0/1:110:61,49:61:2192:49:1729:-122.746,0,-164.432	1/1:136:0,136:0:0:136:4851:-436.738,-40.9401,0	1/1:55:1,54:1:36:54:1932:-170.558,-12.9584,0	1/1:69:0,69:0:0:69:2453:-221.002,-20.7711,0	1/1:132:0,132:0:0:132:4690:-422.21,-39.736,0	0/1:116:60,56:60:2148:56:1985:-143.974,0,-158.668	1/1:83:2,81:2:72:81:2876:-251.899,-18.1488,0	0/1:123:64,59:64:2285:59:2104:-152.6,0,-168.883	0/1:67:37,30:37:1332:30:1080:-77.2579,0,-100.013	1/1:75:0,75:0:0:75:2673:-240.741,-22.5773,0	1/1:68:0,68:0:0:68:2440:-219.822,-20.47,0	0/1:65:35,30:35:1241:30:1076:-77.5721,0,-92.4256	0/1:57:31,26:31:1116:26:936:-67.3961,0,-83.593	1/1:30:0,30:0:0:30:1068:-96.4228,-9.0309,0	1/1:49:0,49:0:0:49:1752:-157.96,-14.7505,0	1/1:32:0,32:0:0:32:1152:-103.982,-9.63296,0	0/1:29:14,15:14:500:15:540:-40.1961,0,-36.6063	0/1:199:99,100:99:3560:100:3569:-261.507,0,-260.702	1/1:100:0,100:0:0:100:3553:-319.13,-30.103,0	1/1:143:0,143:0:0:143:5113:-460.307,-43.0473,0	0/1:67:39,28:39:1404:28:1008:-70.8627,0,-106.49	1/1:134:3,131:3:108:131:4696:-412.663,-30.2629,0	0/1:53:25,28:25:896:28:1004:-74.6644,0,-65.0058	1/1:348:1,347:1:36:347:12368:-1109.15,-101.16,0	0/1:183:86,96:86:3096:96:3440:-254.659,0,-223.719	0/1:22:9,13:9:324:13:464:-35.4669,0,-22.8832	0/1:257:114,143:114:4092:143:5062:-378.355,0,-291.1	0/1:142:64,78:64:2304:78:2758:-205.701,0,-164.874	0/1:90:41,49:41:1476:49:1752:-130.86,0,-106.043	1/1:19:0,19:0:0:19:684:-61.8811,-5.71957,0	1/1:13:0,13:0:0:13:468:-42.455,-3.91339,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:14:0,14:0:0:14:504:-45.6899,-4.21442,0	0/1:187:105,82:105:3776:82:2917:-206.467,0,-283.745	1/1:51:0,51:0:0:51:1820:-164.02,-15.3525,0	0/1:76:50,26:50:1796:26:936:-61.673,0,-139.044	.:.:.:.:.:.:.:.	0/1:134:59,75:59:2112:75:2669:-199.967,0,-150.011	1/1:35:0,35:0:0:35:1252:-112.806,-10.5361,0	0/1:126:76,49:76:2717:49:1730:-117.983,0,-206.783	0/1:60:29,31:29:1044:31:1112:-82.3295,0,-76.213	1/1:60:0,60:0:0:60:2127:-191.653,-18.0618,0	1/1:151:1,150:1:36:150:5361:-478.991,-41.8573,0	0/1:118:59,59:59:2101:59:2090:-152.748,0,-153.836	1/1:65:1,64:1:36:64:2281:-201.945,-15.9687,0	1/1:83:0,83:0:0:83:2946:-265.367,-24.9855,0	0/1:139:75,64:75:2692:64:2289:-164.412,0,-200.681	1/1:188:9,179:9:320:179:6372:-544.2,-27.4513,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:104:0,104:0:0:104:3705:-333.611,-31.3071,0	0/1:71:33,38:33:1188:38:1364:-101.685,0,-85.8555	0/1:22:15,7:15:536:7:237:-15.0364,0,-41.9522	0/1:81:45,35:45:1616:35:1256:-88.9963,0,-121.388	1/1:44:2,42:2:72:42:1506:-128.994,-6.4086,0	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:45:25,20:25:896:20:712:-50.8511,0,-67.414	1/1:117:0,117:0:0:117:4192:-377.436,-35.2205,0	0/1:16:8,8:8:288:8:269:-19.7181,0,-21.4509	1/1:157:1,156:1:36:156:5580:-498.715,-43.6634,0	1/1:185:0,185:0:0:185:6587:-592.865,-55.6906,0	0/1:30:19,11:19:684:11:377:-25.2224,0,-52.8594	0/1:53:31,22:31:1116:22:792:-55.6511,0,-84.7971	1/1:159:3,156:3:108:156:5562:-490.125,-37.7886,0	1/1:88:3,85:3:108:85:3048:-264.462,-16.4155,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:93:0,93:0:0:93:3301:-297.234,-27.9958,0	1/1:83:0,83:0:0:83:2965:-267.073,-24.9855,0	0/1:15:2,13:2:72:13:468:-37.9442,0,-2.32127	1/1:116:0,116:0:0:116:4118:-370.543,-34.9195,0	0/1:49:30,19:30:1076:19:680:-46.7705,0,-82.4024	1/1:112:0,112:0:0:112:4004:-360.53,-33.7154,0	1/1:90:0,90:0:0:90:3188:-287.127,-27.0927,0	0/1:42:27,15:27:972:15:540:-36.2909,0,-75.1546	1/1:59:0,59:0:0:59:2099:-189.159,-17.7608,0	1/1:23:0,23:0:0:23:828:-74.7127,-6.92369,0	1/1:56:0,56:0:0:56:1988:-179.172,-16.8577,0	1/1:101:0,101:0:0:101:3612:-325.208,-30.404,0	1/1:124:0,124:0:0:124:4418:-396.976,-37.3277,0	0/1:93:40,53:40:1436:53:1893:-142.646,0,-101.542	1/1:44:0,44:0:0:44:1572:-141.767,-13.2453,0	0/1:77:43,34:43:1529:34:1220:-86.9168,0,-114.722	0/1:139:72,67:72:2577:67:2408:-175.116,0,-190.334	0/1:45:17,28:17:612:28:1008:-77.4737,0,-41.8671	0/1:77:41,36:41:1476:36:1288:-93.0443,0,-109.957	1/1:43:0,43:0:0:43:1548:-139.605,-12.9443,0	0/1:29:17,12:17:608:12:424:-29.7665,0,-46.3222	0/1:88:49,39:49:1756:39:1388:-98.7191,0,-131.833	0/1:73:55,18:55:1976:18:648:-36.6637,0,-156.139	1/1:110:0,110:0:0:110:3929:-353.759,-33.1133,0	1/1:99:0,99:0:0:99:3548:-318.984,-29.802,0
chr06	34307108	.	A	G	124975	PASS	AB=0.481461;ABP=13.7992;AC=142;AF=0.763441;AN=186;AO=5919;CIGAR=1X;DP=7822;DPB=7822;DPRA=0;EPP=12856;EPPR=4128.81;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.5984;MQMR=60;NS=93;NUMALT=1;ODDS=0.027701;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211638;QR=68073;RO=1900;RPL=5919;RPP=12856;RPPR=4128.81;RPR=0;RUN=1;SAF=0;SAP=12856;SAR=5919;SRF=0;SRP=4128.81;SRR=1900;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:34,22:34:1212:22:792:-54.748,0,-92.5286	0/1:57:22,35:22:792:35:1260:-96.5304,0,-54.447	0/1:108:60,48:60:2148:48:1712:-121.832,0,-161.076	1/1:135:0,135:0:0:135:4791:-431.343,-40.6391,0	1/1:57:1,56:1:36:56:2000:-176.675,-13.5604,0	1/1:68:0,68:0:0:68:2436:-219.466,-20.47,0	1/1:135:0,135:0:0:135:4824:-434.215,-40.6391,0	0/1:118:61,57:61:2163:57:2039:-148.2,0,-159.415	1/1:86:2,84:2:72:84:3016:-264.032,-19.0519,0	0/1:121:63,58:63:2252:58:2084:-151.403,0,-166.519	0/1:68:37,31:37:1332:31:1116:-80.1595,0,-99.7123	1/1:75:0,75:0:0:75:2680:-241.369,-22.5773,0	1/1:69:0,69:0:0:69:2472:-222.701,-20.7711,0	0/1:65:35,30:35:1260:30:1076:-77.5721,0,-94.1385	0/1:56:30,26:30:1076:26:936:-67.6971,0,-80.2952	1/1:31:0,31:0:0:31:1116:-100.742,-9.33193,0	1/1:50:0,50:0:0:50:1792:-161.561,-15.0515,0	1/1:32:0,32:0:0:32:1148:-103.622,-9.63296,0	0/1:29:14,15:14:504:15:536:-39.8344,0,-36.9682	0/1:202:101,101:101:3609:101:3605:-263.845,0,-264.207	1/1:100:0,100:0:0:100:3592:-322.623,-30.103,0	1/1:142:0,142:0:0:142:5063:-455.812,-42.7463,0	0/1:67:39,28:39:1389:28:992:-69.4207,0,-105.138	1/1:136:3,133:3:108:133:4751:-417.608,-30.8649,0	0/1:54:26,28:26:936:28:1008:-74.7239,0,-68.3038	1/1:346:1,345:1:36:345:12347:-1107.34,-100.558,0	0/1:188:90,98:90:3228:98:3520:-260.408,0,-234.148	0/1:22:9,13:9:324:13:462:-35.284,0,-22.8832	0/1:258:113,145:113:4045:145:5179:-388.576,0,-286.57	0/1:142:64,78:64:2296:78:2788:-208.402,0,-164.155	0/1:93:43,50:43:1548:50:1788:-133.15,0,-111.617	1/1:19:0,19:0:0:19:675:-61.0677,-5.71957,0	1/1:13:0,13:0:0:13:464:-42.0929,-3.91339,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:14:0,14:0:0:14:504:-45.6899,-4.21442,0	0/1:185:104,80:104:3727:80:2859:-201.795,0,-279.881	1/1:51:0,51:0:0:51:1824:-164.225,-15.3525,0	0/1:75:49,26:49:1760:26:932:-61.6134,0,-136.107	.:.:.:.:.:.:.:.	0/1:132:58,74:58:2084:74:2656:-199.4,0,-148.094	1/1:35:0,35:0:0:35:1244:-112.112,-10.5361,0	0/1:130:81,49:81:2904:49:1744:-118.099,0,-222.461	0/1:61:29,32:29:1044:32:1148:-85.267,0,-75.912	1/1:62:0,62:0:0:62:2220:-200.04,-18.6639,0	1/1:152:1,150:1:36:150:5352:-478.179,-42.2171,0	0/1:119:57,62:57:2036:62:2220:-164.102,0,-147.69	1/1:64:1,63:1:36:63:2260:-200.056,-15.6676,0	1/1:85:0,85:0:0:85:3029:-272.793,-25.5876,0	0/1:141:76,65:76:2724:65:2328:-167.321,0,-202.958	1/1:187:9,178:9:324:178:6369:-543.632,-26.7868,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:105:0,105:0:0:105:3754:-338.025,-31.6082,0	0/1:74:34,40:34:1224:40:1404:-104.378,0,-88.1908	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:81:46,35:46:1625:35:1260:-89.3128,0,-122.153	1/1:44:2,42:2:72:42:1504:-128.813,-6.4086,0	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:45:25,20:25:900:20:711:-50.7505,0,-67.7747	1/1:119:0,119:0:0:119:4255:-383.105,-35.8226,0	0/1:16:8,8:8:288:8:284:-21.0415,0,-21.4509	1/1:162:0,162:0:0:162:5784:-520.663,-48.7669,0	1/1:186:0,186:0:0:186:6667:-599.952,-55.9916,0	0/1:29:18,11:18:644:11:396:-27.2482,0,-49.5607	0/1:54:31,23:31:1116:23:824:-58.2277,0,-84.4961	1/1:158:4,154:4:144:154:5494:-480.48,-34.2491,0	1/1:87:3,84:3:108:84:3016:-261.583,-16.1144,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:96:0,96:0:0:96:3422:-307.348,-28.8989,0	1/1:85:0,85:0:0:85:3043:-274.09,-25.5876,0	0/1:15:2,13:2:72:13:468:-37.9442,0,-2.32127	1/1:118:0,118:0:0:118:4187:-376.752,-35.5215,0	0/1:49:30,19:30:1068:19:680:-46.7705,0,-81.6816	1/1:114:0,114:0:0:114:4068:-366.288,-34.3174,0	1/1:92:0,92:0:0:92:3288:-296.117,-27.6948,0	0/1:42:27,15:27:968:15:536:-35.9292,0,-74.7941	1/1:57:0,57:0:0:57:2027:-182.682,-17.1587,0	1/1:23:0,23:0:0:23:828:-74.7127,-6.92369,0	1/1:56:0,55:0:0:55:1967:-177.087,-16.5567,0	1/1:100:0,100:0:0:100:3583:-322.605,-30.103,0	1/1:126:0,126:0:0:126:4507:-404.986,-37.9298,0	0/1:94:41,53:41:1472:53:1896:-142.618,0,-104.479	1/1:44:0,44:0:0:44:1572:-141.767,-13.2453,0	0/1:79:44,35:44:1580:35:1256:-89.5533,0,-118.71	0/1:141:72,69:72:2584:69:2475:-180.54,0,-190.364	0/1:44:16,28:16:572:28:1008:-77.7747,0,-38.5681	0/1:77:41,36:41:1468:36:1283:-92.5933,0,-109.237	1/1:44:0,44:0:0:44:1572:-141.763,-13.2453,0	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	0/1:89:50,39:50:1791:39:1400:-99.4983,0,-134.68	0/1:70:52,18:52:1864:18:644:-37.2119,0,-146.967	1/1:110:0,110:0:0:110:3898:-350.973,-33.1133,0	1/1:98:0,98:0:0:98:3516:-316.326,-29.5009,0
chr06	34311371	.	TGTG	TGTT,AGTT	207437	PASS	AB=0.662535,0.335296;ABP=743.478,763.375;AC=143,43;AF=0.768817,0.231183;AN=186;AO=6739,1088;CIGAR=3M1X,1X2M1X;DP=7850;DPB=7850.5;DPRA=85.3152,0.909552;EPP=14567.2,2365.57;EPPR=5.18177;GTI=7;LEN=1,4;MEANALT=1.70652,2.17391;MQM=59.644,39.2243;MQMR=60;NS=93;NUMALT=2;ODDS=2.79144;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=18,18;PQR=0;PRO=0;QA=240315,38049;QR=33;RO=1;RPL=2803,0;RPP=416.647,2365.57;RPPR=5.18177;RPR=3936,1088;RUN=1,1;SAF=2811,0;SAP=405.047,2365.57;SAR=3928,1088;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,28,2:0:0:28,2:995,72:-89.5224,-8.42884,0,-84.0279,-2.59446,-83.4258	1/2:54:0,36,17:0:0:36,17:1267,599:-148.177,-45.0462,-34.2091,-103.109,0,-97.992	1/2:79:0,46,33:0:0:46,33:1644,1152:-222.147,-88.0991,-74.2518,-134.389,0,-124.455	1/1:169:0,169,0:0:0:169,0:6004,0:-540.457,-50.8741,0,-540.457,-50.8741,-540.457	1/1:20:0,20,0:0:0:20,0:716,0:-64.7631,-6.0206,0,-64.7631,-6.0206,-64.7631	1/1:23:0,23,0:0:0:23,0:828,0:-74.8278,-6.92369,0,-74.8278,-6.92369,-74.8278	1/1:68:0,68,0:0:0:68,0:2428,0:-218.767,-20.47,0,-218.767,-20.47,-218.767	1/2:138:0,105,33:0:0:105,33:3754,1168:-395.755,-89.6662,-58.0581,-306.429,0,-296.495	1/1:138:0,138,0:0:0:138,0:4926,0:-443.371,-41.5421,0,-443.371,-41.5421,-443.371	1/2:98:0,81,17:0:0:81,17:2870,599:-279.717,-45.932,-21.5485,-234.121,0,-229.003	1/2:70:0,47,22:0:0:47,22:1672,775:-196.03,-59.8042,-45.6558,-136.218,0,-129.596	1/1:189:0,188,0:0:0:188,0:6695,0:-602.271,-56.5936,0,-602.271,-56.5936,-602.271	1/1:168:0,168,0:0:0:168,0:5985,0:-538.734,-50.573,0,-538.734,-50.573,-538.734	1/2:115:0,65,50:0:0:65,50:2309,1752:-323.45,-135.295,-115.728,-188.498,0,-173.446	1/2:120:0,74,45:0:0:74,45:2638,1587:-338.732,-123.732,-101.456,-215.092,0,-201.546	1/1:135:0,135,0:0:0:135,0:4789,0:-431.07,-40.6391,0,-431.07,-40.6391,-431.07	1/1:71:0,70,0:0:0:70,0:2495,0:-223.877,-21.0721,0,-223.877,-21.0721,-223.877	1/1:70:0,70,0:0:0:70,0:2490,0:-224.35,-21.0721,0,-224.35,-21.0721,-224.35	1/2:38:0,22,16:0:0:22,16:777,555:-106.226,-42.9517,-36.3291,-63.614,0,-58.7975	1/2:99:0,63,36:0:0:63,36:2228,1270:-279.796,-98.366,-79.4011,-181.772,0,-170.935	1/1:202:0,201,0:0:0:201,0:7127,0:-641.188,-60.507,0,-641.188,-60.507,-641.188	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/2:44:0,20,24:0:0:20,24:710,846:-123.65,-65.7913,-59.7707,-58.2047,0,-50.98	1/1:35:0,35,0:0:0:35,0:1252,0:-112.985,-10.5361,0,-112.985,-10.5361,-112.985	1/2:35:0,20,15:0:0:20,15:720,537:-100.468,-41.7172,-35.6966,-59.0989,0,-54.5835	1/1:191:0,191,0:0:0:191,0:6767,0:-608.936,-57.4967,0,-608.936,-57.4967,-608.936	1/2:110:0,77,33:0:0:77,33:2756,1151:-315.053,-90.3451,-67.1658,-225.051,0,-215.117	1/2:48:0,37,10:0:0:37,10:1309,355:-134.425,-27.7982,-16.6601,-106.73,0,-103.72	1/2:155:0,94,61:0:0:94,61:3366,2145:-442.05,-167.594,-139.298,-274.802,0,-256.439	1/2:61:0,46,15:0:0:46,15:1624,511:-171.91,-39.6439,-25.7966,-132.598,0,-128.083	1/2:73:0,50,23:0:0:50,23:1765,803:-206.609,-62.9243,-47.8728,-144.026,0,-137.102	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:13:0,13,0:0:0:13,0:460,0:-41.7354,-3.91339,0,-41.7354,-3.91339,-41.7354	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:227:0,158,68:0:0:158,68:5680,2361:-646.375,-183.036,-135.473,-463.32,0,-442.85	1/1:57:0,57,0:0:0:57,0:2044,0:-184.175,-17.1587,0,-184.175,-17.1587,-184.175	1/2:55:0,35,20:0:0:35,20:1247,710:-156.19,-54.6199,-44.0839,-101.913,0,-95.8922	.:.:.:.:.:.:.:.	1/2:120:0,71,49:0:0:71,49:2544,1742:-342.791,-135.314,-113.941,-207.824,0,-193.073	1/1:54:0,52,0:0:0:52,0:1855,0:-166.735,-15.6536,0,-166.735,-15.6536,-166.735	1/2:99:0,84,15:0:0:84,15:3001,504:-284.382,-39.6813,-14.3948,-244.975,0,-240.459	1/2:111:0,71,40:0:0:71,40:2541,1386:-315.27,-108.048,-86.6749,-207.564,0,-195.522	1/1:112:1,109,0:1:33:109,0:3911,0:-348.037,-30.1411,0,-348.338,-32.8123,-351.006	1/1:60:0,60,0:0:0:60,0:2133,0:-192.176,-18.0618,0,-192.176,-18.0618,-192.176	1/2:43:0,33,10:0:0:33,10:1180,354:-123.675,-27.4412,-17.5072,-96.5741,0,-93.5638	1/1:158:0,157,0:0:0:157,0:5606,0:-504.344,-47.2617,0,-504.344,-47.2617,-504.344	1/1:49:0,49,0:0:0:49,0:1740,0:-156.882,-14.7505,0,-156.882,-14.7505,-156.882	1/2:116:0,74,42:0:0:74,42:2656,1466:-329.978,-113.318,-91.0416,-217.002,0,-204.359	1/1:58:0,56,0:0:0:56,0:2004,0:-180.335,-16.8577,0,-180.335,-16.8577,-180.335	1/2:7:0,3,4:0:0:3,4:108,136:-19.8038,-10.9784,-10.0754,-9.17208,0,-7.96796	1/1:108:0,108,0:0:0:108,0:3880,0:-348.764,-32.5112,0,-348.764,-32.5112,-348.764	1/2:26:0,18,8:0:0:18,8:648,282:-75.2448,-22.3571,-16.9385,-53.2333,0,-50.8251	1/2:3:0,1,2:0:0:1,2:36,66:-8.35748,-5.40552,-5.10449,-3.29724,0,-2.69518	1/2:113:0,80,32:0:0:80,32:2859,1095:-317.82,-84.6964,-60.614,-233.121,0,-223.488	1/1:32:0,32,0:0:0:32,0:1148,0:-103.621,-9.63296,0,-103.621,-9.63296,-103.621	2/2:1:0,0,1:0:0:0,1:0,36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chr06	34311383	.	GGAT	GGAC,AGAC	205548	PASS	AB=0.65931,0.336649;ABP=712.181,748.615;AC=143,43;AF=0.768817,0.231183;AN=186;AO=6701,1093;CIGAR=3M1X,1X2M1X;DP=7825;DPB=7825;DPRA=85.0435,0.957965;EPP=14545.4,2376.43;EPPR=5.18177;GTI=7;LEN=1,4;MEANALT=1.78261,2.20408;MQM=59.6705,39.3211;MQMR=60;NS=93;NUMALT=2;ODDS=3.60746;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=238073,38190;QR=36;RO=1;RPL=2819,4;RPP=369.179,2341.81;RPPR=5.18177;RPR=3882,1089;RUN=1,1;SAF=2820,4;SAP=367.802,2341.81;SAR=3881,1089;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,27,2:0:0:27,2:972,72:-87.4439,-8.12781,0,-81.9498,-2.29343,-81.3477	1/2:54:0,37,17:0:0:37,17:1286,593:-149.427,-44.9024,-33.7643,-104.857,0,-99.7392	1/2:79:0,45,32:0:0:45,32:1589,1097:-213.467,-84.0613,-70.5149,-129.43,0,-119.798	1/1:171:0,170,1:0:0:170,1:6056,35:-544.786,-51.1751,0,-541.94,-47.9796,-541.639	1/1:21:0,21,0:0:0:21,0:726,0:-65.6565,-6.32163,0,-65.6565,-6.32163,-65.6565	1/1:23:0,23,0:0:0:23,0:813,0:-73.4651,-6.92369,0,-73.4651,-6.92369,-73.4651	1/1:66:0,66,0:0:0:66,0:2368,0:-213.371,-19.868,0,-213.371,-19.868,-213.371	1/2:138:0,104,33:0:0:104,33:3685,1134:-387.092,-86.8936,-55.5865,-300.24,0,-290.306	1/1:136:0,135,0:0:0:135,0:4781,0:-430.092,-40.6391,0,-430.092,-40.6391,-430.092	1/2:96:0,79,17:0:0:79,17:2790,599:-273.253,-46.1062,-22.3248,-227.483,0,-222.366	1/2:69:0,47,22:0:0:47,22:1669,778:-196.481,-60.5966,-46.4482,-136.228,0,-129.605	1/1:187:0,186,0:0:0:186,0:6579,0:-591.727,-55.9916,0,-591.727,-55.9916,-591.727	1/1:168:0,168,0:0:0:168,0:5975,0:-537.81,-50.573,0,-537.81,-50.573,-537.81	1/2:115:0,65,50:0:0:65,50:2322,1754:-325.097,-135.774,-116.207,-189.667,0,-174.616	1/2:116:0,71,45:0:0:71,45:2528,1598:-330.648,-124.691,-103.317,-206.304,0,-192.757	1/1:134:0,134,0:0:0:134,0:4766,0:-429.005,-40.338,0,-429.005,-40.338,-429.005	1/1:70:0,70,0:0:0:70,0:2478,0:-222.629,-21.0721,0,-222.629,-21.0721,-222.629	1/1:70:0,70,0:0:0:70,0:2512,0:-226.329,-21.0721,0,-226.329,-21.0721,-226.329	1/2:39:0,22,16:0:0:22,16:780,557:-106.352,-42.7991,-36.1765,-63.5361,0,-58.7196	1/2:97:0,61,36:0:0:61,36:2192,1258:-276.262,-97.4674,-79.1046,-179.137,0,-168.3	1/1:202:0,202,0:0:0:202,0:7175,0:-645.774,-60.8081,0,-645.774,-60.8081,-645.774	1/1:19:0,19,0:0:0:19,0:669,0:-60.5339,-5.71957,0,-60.5339,-5.71957,-60.5339	1/2:43:0,19,23:0:0:19,23:667,817:-117.514,-63.2247,-57.5051,-54.3789,0,-47.4553	1/1:36:0,36,0:0:0:36,0:1288,0:-116.224,-10.8371,0,-116.224,-10.8371,-116.224	1/2:35:0,19,15:0:0:19,15:684,518:-95.7711,-39.9493,-34.2297,-55.8068,0,-51.2913	1/1:190:0,188,0:0:0:188,0:6701,0:-602.931,-56.5936,0,-602.931,-56.5936,-602.931	1/2:105:0,73,32:0:0:73,32:2597,1121:-299.546,-87.8994,-65.9242,-211.99,0,-202.357	1/2:44:0,33,11:0:0:33,11:1167,394:-126.181,-31.133,-21.199,-95.395,0,-92.0837	1/2:152:0,91,61:0:0:91,61:3238,2154:-432.135,-168.293,-140.9,-264.188,0,-245.825	1/2:62:0,47,15:0:0:47,15:1658,515:-174.812,-39.7918,-25.6434,-135.352,0,-130.837	1/2:71:1,47,23:1:36:47,23:1635,826:-193.628,-61.0469,-49.8366,-129.929,0,-125.943	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:12:0,12,0:0:0:12,0:409,0:-37.1354,-3.61236,0,-37.1354,-3.61236,-37.1354	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:222:0,154,67:0:0:154,67:5486,2316:-627.371,-180.209,-133.851,-447.241,0,-427.072	1/1:57:0,56,0:0:0:56,0:1997,0:-179.78,-16.8577,0,-179.78,-16.8577,-179.78	1/2:55:0,35,20:0:0:35,20:1242,704:-155.226,-54.0947,-43.5586,-101.472,0,-95.4512	.:.:.:.:.:.:.:.	1/2:125:0,74,50:0:0:74,50:2648,1773:-353.503,-137.586,-115.31,-215.963,0,-200.912	1/1:53:0,53,0:0:0:53,0:1884,0:-169.829,-15.9546,0,-169.829,-15.9546,-169.829	1/2:102:0,85,17:0:0:85,17:3002,569:-288.798,-44.3917,-18.8041,-244.734,0,-239.616	1/2:112:0,72,40:0:0:72,40:2561,1415:-318.852,-110.134,-88.4595,-209.062,0,-197.021	1/1:114:0,112,2:0:0:112,2:3949,69:-355.187,-33.7154,0,-349.712,-27.9027,-349.11	1/1:61:0,61,0:0:0:61,0:2177,0:-196.138,-18.3628,0,-196.138,-18.3628,-196.138	1/2:43:0,33,10:0:0:33,10:1150,339:-119.923,-26.3836,-16.4496,-93.868,0,-90.8577	1/1:158:0,155,0:0:0:155,0:5465,0:-491.516,-46.6597,0,-491.516,-46.6597,-491.516	1/1:49:0,49,0:0:0:49,0:1752,0:-157.962,-14.7505,0,-157.962,-14.7505,-157.962	1/2:115:0,74,41:0:0:74,41:2652,1440:-327.82,-111.52,-89.2442,-216.642,0,-204.3	1/1:59:0,59,0:0:0:59,0:2082,0:-187.644,-17.7608,0,-187.644,-17.7608,-187.644	1/2:7:0,3,4:0:0:3,4:108,130:-19.3199,-10.4889,-9.5858,-9.17208,0,-7.96796	1/1:109:0,108,0:0:0:108,0:3867,0:-347.672,-32.5112,0,-347.672,-32.5112,-347.672	1/2:26:0,18,8:0:0:18,8:644,288:-75.3324,-22.8095,-17.391,-52.8721,0,-50.4638	1/2:3:0,1,2:0:0:1,2:36,72:-8.77882,-5.83438,-5.53335,-3.29724,0,-2.69518	1/2:119:0,83,34:0:0:83,34:2963,1168:-331.813,-90.2361,-65.2506,-241.608,0,-231.373	1/1:31:0,31,0:0:0:31,0:1116,0:-100.742,-9.33193,0,-100.742,-9.33193,-100.742	2/2:1:0,0,1:0:0:0,1:0,36: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chr06	34406397	.	T	C	26110.2	PASS	AB=0.528478;ABP=23.417;AC=44;AF=0.23913;AN=184;AO=1546;CIGAR=1X;DP=6279;DPB=6279;DPRA=1.08755;EPP=3360.11;EPPR=10261.1;GTI=1;LEN=1;MEANALT=1.02041;MQM=59.9476;MQMR=59.9831;NS=92;NUMALT=1;ODDS=1.63929;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55067;QR=169360;RO=4732;RPL=1545;RPP=3351.43;RPPR=10261.1;RPR=1;RUN=1;SAF=1545;SAP=3351.43;SAR=1;SRF=4732;SRP=10278.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:14,26:14:500:26:932:-71.6662,0,-33.295	0/1:77:42,35:42:1512:35:1252:-89.8058,0,-113.195	0/1:95:24,71:24:864:71:2544:-200.613,0,-49.4847	0/0:132:132,0:132:4706:0:0:0,-39.736,-423.701	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/0:82:80,2:80:2855:2:72:0,-17.8477,-250.351	0/1:82:41,41:41:1468:41:1454:-106.47,0,-107.732	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:31:16,15:16:576:15:525:-38.2477,0,-42.8431	0/1:35:20,15:20:707:15:531:-37.5859,0,-53.4185	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:43:43,0:43:1531:0:0:0,-12.9443,-137.961	0/1:56:27,29:27:972:29:1034:-76.5158,0,-70.9402	0/1:60:30,30:30:1076:30:1072:-78.7307,0,-79.0911	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:50:50,0:50:1744:0:0:0,-15.0515,-157.239	0/1:28:15,13:15:540:13:464:-33.6687,0,-40.5077	0/1:87:51,36:51:1824:36:1275:-88.8627,0,-138.251	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/1:62:33,29:33:1184:29:1044:-75.6109,0,-88.2045	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/1:60:30,30:30:1076:30:1065:-78.098,0,-79.0911	0/0:151:151,0:151:5412:0:0:0,-45.4555,-487.209	0/1:141:64,77:64:2274:77:2717:-202.326,0,-162.476	0/1:46:14,32:14:500:32:1139:-88.971,0,-31.4888	0/1:145:79,66:79:2844:66:2356:-168.639,0,-212.548	0/1:101:62,39:62:2228:39:1388:-94.8103,0,-170.38	0/1:66:29,37:29:1036:37:1332:-100.314,0,-73.6859	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	.:.:.:.:.:.:.:.	0/1:204:99,105:99:3523:105:3729:-274.329,0,-255.868	0/0:104:104,0:104:3711:0:0:0,-31.3071,-334.192	0/1:41:21,20:21:756:20:697:-50.7079,0,-56.025	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:91:30,61:30:1068:61:2175:-168.622,0,-69.0383	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:98:49,49:49:1764:49:1756:-128.823,0,-129.543	0/1:70:36,34:36:1292:34:1211:-88.2234,0,-95.5117	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.87	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:69:34,35:34:1224:35:1256:-92.5742,0,-89.696	0/0:155:155,0:155:5542:0:0:0,-46.6596,-498.902	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:105:39,66:39:1404:66:2349:-180.06,0,-95.0511	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:81:37,44:37:1319:44:1580:-118.108,0,-94.6277	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	.:.:.:.:.:.:.:.	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:42:19,23:19:684:23:828:-62.2009,0,-49.2471	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/0:164:164,0:164:5888:0:0:0,-49.3689,-530.028	0/0:128:127,1:127:4541:1:36:0,-34.9336,-405.257	0/1:47:22,25:22:788:25:900:-67.1726,0,-57.0964	0/1:45:13,32:13:468:32:1139:-89.272,0,-28.9133	0/0:97:97,0:97:3466:0:0:0,-29.1999,-312.151	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/0:24:23,1:23:828:1:36:0,-3.62644,-71.2458	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:60:60,0:60:2142:0:0:0,-18.0618,-193.046	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:70:70,0:70:2489:0:0:0,-21.0721,-224.262	0/1:80:36,44:36:1292:44:1556:-116.247,0,-92.5014	0/0:86:86,0:86:3064:0:0:0,-25.8886,-275.987	0/0:95:95,0:95:3407:0:0:0,-28.5978,-306.574	0/1:70:31,39:31:1112:39:1394:-104.686,0,-79.3192	0/0:101:98,3:98:3511:3:108:0,-20.3289,-306.124	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:83:83,0:83:2975:0:0:0,-24.9855,-267.982	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:142:141,1:141:5038:1:36:0,-39.148,-449.967	0/1:84:46,38:46:1652:38:1329:-94.6198,0,-123.682	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/1:82:36,46:36:1287:46:1632:-122.482,0,-91.4483	0/1:154:79,74:79:2799:74:2632:-190.746,0,-205.771	0/1:49:28,21:28:1008:21:739:-52.0819,0,-76.2859	0/1:86:36,50:36:1277:50:1778:-134.412,0,-89.3425	0/0:75:75,0:75:2666:0:0:0,-22.5772,-240.116	0/1:19:8,11:8:279:11:396:-30.2632,0,-19.728	0/1:52:27,25:27:972:25:896:-65.3068,0,-72.1443	0/1:75:26,49:26:936:49:1751:-135.296,0,-61.9822	0/0:95:94,1:94:3349:1:36:0,-24.9996,-298.028	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891
chr06	34406418	.	T	C	95453.5	PASS	AB=0.474458;ABP=19.2059;AC=140;AF=0.76087;AN=184;AO=4704;CIGAR=1X;DP=6230;DPB=6230;DPRA=11.3993;EPP=10217.6;EPPR=3303.65;GTI=1;LEN=1;MEANALT=1.05495;MQM=59.9853;MQMR=60;NS=92;NUMALT=1;ODDS=2.12969;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163747;QR=53894;RO=1520;RPL=4704;RPP=10217.6;RPPR=3294.97;RPR=0;RUN=1;SAF=4704;SAP=10217.6;SAR=0;SRF=1519;SRP=3294.97;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:22,14:22:784:14:500:-34.4991,0,-60.0468	0/1:72:32,40:32:1148:40:1356:-100.657,0,-81.9557	0/1:94:69,25:69:2430:25:858:-49.2349,0,-190.659	1/1:132:0,132:0:0:132:4611:-415.161,-39.736,0	1/1:62:0,62:0:0:62:2152:-193.944,-18.6639,0	1/1:28:0,28:0:0:28:983:-88.7834,-8.42884,0	1/1:82:1,81:1:36:81:2863:-254.311,-21.0862,0	0/1:80:39,41:39:1387:41:1434:-105.272,0,-101.046	1/1:69:0,69:0:0:69:2355:-212.208,-20.7711,0	0/1:29:13,16:13:460:16:529:-39.192,0,-33.0055	0/1:35:15,20:15:531:20:675:-50.5273,0,-37.5859	1/1:66:0,66:0:0:66:2258:-203.481,-19.868,0	1/1:42:0,42:0:0:42:1448:-130.587,-12.6433,0	0/1:56:29,27:29:1032:27:910:-65.3476,0,-76.3358	0/1:59:29,30:29:1027:30:1044:-76.5089,0,-74.9814	1/1:37:0,37:0:0:37:1277:-115.228,-11.1381,0	1/1:74:0,74:0:0:74:2542:-229.03,-22.2762,0	1/1:49:1,48:1:36:48:1664:-146.446,-11.1522,0	0/1:26:11,15:11:396:15:531:-40.2951,0,-28.156	0/1:92:37,55:37:1302:55:1877:-141.509,0,-89.785	1/1:105:0,105:0:0:105:3683:-331.674,-31.6082,0	1/1:103:0,101:0:0:101:3563:-320.52,-30.404,0	0/1:62:30,32:30:1072:32:1140:-84.2453,0,-78.1286	1/1:74:0,74:0:0:74:2555:-230.201,-22.2762,0	0/1:58:28,30:28:985:30:1064:-78.6119,0,-71.5018	1/1:148:0,147:0:0:147:5169:-464.997,-44.2514,0	0/1:141:77,64:77:2733:64:2257:-160.947,0,-203.767	0/1:44:31,13:31:1108:13:455:-28.0366,0,-86.7857	0/1:141:66,75:66:2318:75:2618:-193.422,0,-166.433	0/1:97:37,60:37:1328:60:2091:-159.258,0,-90.6223	0/1:65:36,29:36:1279:29:1010:-71.6426,0,-95.8455	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	0/1:203:102,100:102:3632:100:3420:-246.852,0,-265.916	1/1:102:0,101:0:0:101:3540:-318.451,-30.404,0	0/1:39:19,20:19:680:20:700:-51.5833,0,-49.789	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:93:60,33:60:2126:33:1146:-75.4484,0,-163.612	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	0/1:99:49,50:49:1738:50:1747:-127.704,0,-126.901	0/1:71:35,36:35:1248:36:1284:-94.4903,0,-91.2517	1/1:47:0,47:0:0:47:1638:-147.707,-14.1484,0	1/1:66:0,66:0:0:66:2335:-210.41,-19.868,0	0/1:68:34,34:34:1215:34:1160:-84.2277,0,-89.1857	1/1:153:0,153:0:0:153:5349:-481.551,-46.0576,0	1/1:49:0,49:0:0:49:1701:-153.373,-14.7505,0	0/1:106:67,39:67:2377:39:1374:-92.0479,0,-182.278	1/1:84:0,83:0:0:83:2837:-255.21,-24.9855,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:56:0,56:0:0:56:1953:-176.044,-16.8577,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:8:4,4:4:144:4:117:-8.4123,0,-10.9054	0/1:84:47,37:47:1673:37:1268:-89.1306,0,-125.569	1/1:36:0,36:0:0:36:1271:-114.692,-10.8371,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:42:23,19:23:820:19:674:-48.3443,0,-61.4793	1/1:89:0,89:0:0:89:3046:-274.371,-26.7917,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	1/1:162:2,160:2:72:160:5630:-499.993,-41.9301,0	1/1:129:1,128:1:36:128:4458:-397.796,-35.2346,0	0/1:47:25,22:25:884:22:769:-55.3802,0,-65.73	0/1:42:31,11:31:1112:11:396:-23.3395,0,-87.7481	1/1:96:0,96:0:0:96:3328:-299.739,-28.8989,0	1/1:39:0,39:0:0:39:1356:-122.335,-11.7402,0	1/1:24:1,23:1:36:23:772:-66.1919,-3.62645,0	1/1:45:0,45:0:0:45:1592:-143.57,-13.5464,0	1/1:59:0,59:0:0:59:2049:-184.678,-17.7608,0	0/1:16:7,9:7:248:9:320:-24.3259,0,-17.8477	1/1:69:0,69:0:0:69:2369:-213.465,-20.7711,0	0/1:79:44,35:44:1567:35:1227:-86.9517,0,-117.54	1/1:88:0,88:0:0:88:3042:-274.013,-26.4906,0	1/1:94:0,94:0:0:94:3290:-296.055,-28.2968,0	0/1:69:37,32:37:1289:32:1133:-81.5056,0,-95.535	1/1:102:4,98:4:144:98:3406:-293.445,-17.3914,0	1/1:11:0,11:0:0:11:378:-34.3491,-3.31133,0	1/1:81:0,81:0:0:81:2855:-257.19,-24.3834,0	1/1:102:0,102:0:0:102:3572:-321.692,-30.7051,0	1/1:140:1,139:1:36:139:4867:-434.59,-38.5459,0	0/1:83:36,47:36:1249:47:1601:-119.389,0,-87.7216	1/1:51:0,51:0:0:51:1768:-159.4,-15.3525,0	0/1:79:46,33:46:1631:33:1155:-80.4742,0,-123.297	0/1:149:71,78:71:2494:78:2729:-200.999,0,-179.858	0/1:48:20,28:20:716:28:1004:-76.2264,0,-50.3183	0/1:82:49,33:49:1756:33:1140:-78.2181,0,-133.64	1/1:75:0,75:0:0:75:2595:-233.8,-22.5773,0	0/1:19:11,8:11:396:8:275:-19.3639,0,-30.2632	0/1:53:25,28:25:859:28:962:-70.9346,0,-61.6661	0/1:76:50,26:50:1756:26:884:-56.9906,0,-135.442	1/1:97:2,95:2:68:95:3345:-294.81,-22.7422,0	1/1:97:0,97:0:0:97:3304:-297.583,-29.1999,0
chr06	34412363	.	C	T	92306.2	PASS	AB=0.505582;ABP=4.10115;AC=140;AF=0.752688;AN=186;AO=6656;CIGAR=1X;DP=8668;DPB=8668;DPRA=31.3949;EPP=14456.3;EPPR=4365.5;GTI=1;LEN=1;MEANALT=1.03261;MQM=28.61;MQMR=59.6356;NS=93;NUMALT=1;ODDS=2.64885;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236901;QR=71488;RO=2009;RPL=1;RPP=14447.6;RPPR=4365.5;RPR=6655;RUN=1;SAF=1;SAP=14447.6;SAR=6655;SRF=0;SRP=4365.5;SRR=2009;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:4,5:4:140:5:180:-8.89042,0,-10.2353	0/1:88:52,36:52:1855:36:1283:-54.8705,0,-140.723	0/1:97:44,53:44:1567:53:1887:-88.4554,0,-111.721	1/1:209:0,209:0:0:209:7445:-532.62,-62.9153,0	1/1:40:0,40:0:0:40:1432:-98.5974,-12.0412,0	1/1:44:0,44:0:0:44:1580:-97.6553,-13.2453,0	1/1:82:0,82:0:0:82:2943:-207.912,-24.6845,0	0/1:149:77,72:77:2731:72:2571:-118.102,0,-201.161	1/1:63:0,63:0:0:63:2241:-142.763,-18.9649,0	0/1:134:60,74:60:2139:74:2640:-150.579,0,-152.438	0/1:56:25,31:25:878:31:1089:-60.9659,0,-61.8305	1/1:87:0,87:0:0:87:3068:-192.873,-26.1896,0	1/1:81:0,81:0:0:81:2896:-181.313,-24.3834,0	0/1:73:36,37:36:1287:37:1321:-66.2965,0,-93.8813	0/1:57:40,17:40:1424:17:608:-27.3657,0,-111.298	1/1:63:0,63:0:0:63:2222:-151.06,-18.9649,0	1/1:73:0,73:0:0:73:2608:-163.426,-21.9752,0	1/1:60:0,60:0:0:60:2140:-134.18,-18.0618,0	0/1:42:20,22:20:697:22:784:-36.1516,0,-50.4074	0/1:155:67,88:67:2397:88:3098:-177.418,0,-169.23	1/1:101:0,101:0:0:101:3590:-244.824,-30.404,0	1/1:99:0,99:0:0:99:3526:-273.305,-29.802,0	0/1:95:53,42:53:1900:42:1488:-78.3638,0,-140.514	1/1:52:0,52:0:0:52:1848:-124.663,-15.6536,0	0/1:45:16,29:16:572:29:1029:-55.2933,0,-38.2671	1/1:345:0,345:0:0:345:12160:-940.534,-103.855,0	0/1:218:96,121:96:3436:121:4335:-224.19,0,-243.908	0/1:45:14,31:14:492:31:1108:-61.0358,0,-31.066	0/1:286:139,146:139:4949:146:5155:-315.029,0,-359.478	0/1:92:51,41:51:1814:41:1468:-69.7376,0,-135.827	0/1:117:63,54:63:2219:54:1929:-97.9368,0,-164.749	1/1:1:0,1:0:0:1:36:-2.7362,-0.30103,0	1/1:10:0,10:0:0:10:349:-24.3631,-3.0103,0	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:32:-2.5029,-0.30103,0	1/1:6:0,6:0:0:6:216:-13.5598,-1.80618,0	0/1:240:117,123:117:4122:123:4392:-267.978,0,-298.917	1/1:212:0,212:0:0:212:7505:-504.747,-63.8184,0	0/1:100:53,47:53:1878:47:1684:-76.3408,0,-138.905	0/1:6:2,4:2:72:4:144:-8.31777,0,-5.03054	0/1:136:69,67:69:2467:67:2400:-120.281,0,-181.329	1/1:69:0,69:0:0:69:2459:-165.889,-20.7711,0	0/1:77:39,38:39:1396:38:1364:-66.4539,0,-102.746	0/1:111:52,59:52:1851:59:2109:-115.787,0,-133.368	1/1:85:0,85:0:0:85:3056:-218.243,-25.5876,0	1/1:88:0,88:0:0:88:3156:-240.946,-26.4906,0	0/1:153:76,77:76:2720:77:2748:-125.456,0,-198.978	1/1:179:0,179:0:0:179:6318:-449.952,-53.8844,0	1/1:137:0,137:0:0:137:4863:-346.41,-41.2411,0	0/1:119:60,59:60:2136:59:2110:-116.845,0,-156.684	1/1:60:0,60:0:0:60:2152:-164.263,-18.0618,0	0/1:7:4,3:4:135:3:108:-6.02053,0,-10.3753	1/1:138:0,138:0:0:138:4933:-312.607,-41.5421,0	0/1:59:23,36:23:816:36:1284:-82.1741,0,-56.0005	0/1:27:15,12:15:532:12:424:-19.6607,0,-40.0853	0/1:123:55,68:55:1957:68:2432:-125.508,0,-139.355	1/1:39:0,39:0:0:39:1354:-99.6623,-11.7402,0	0/1:4:2,2:2:72:2:72:-4.73079,0,-5.62609	1/1:10:0,10:0:0:10:360:-28.0725,-3.0103,0	0/1:20:14,6:14:496:6:207:-7.66324,0,-38.9537	1/1:150:2,147:2:68:147:5247:-372.186,-38.7438,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0748	1/1:234:0,234:0:0:234:8270:-635.176,-70.441,0	1/1:170:4,166:4:136:166:5945:-417.598,-38.602,0	0/1:39:18,21:18:648:21:729:-38.5595,0,-46.901	0/1:91:50,41:50:1796:41:1472:-79.831,0,-134.524	1/1:126:3,123:3:108:123:4371:-302.832,-27.8546,0	1/1:98:0,98:0:0:98:3459:-249.327,-29.5009,0	1/1:20:0,20:0:0:20:720:-49.5253,-6.0206,0	1/1:67:0,67:0:0:67:2404:-149.779,-20.169,0	1/1:90:0,90:0:0:90:3201:-248.502,-27.0927,0	0/1:16:7,9:7:252:9:324:-15.9101,0,-18.2125	1/1:85:1,84:1:36:84:2994:-184.376,-21.9893,0	0/1:49:24,25:24:843:25:888:-42.6952,0,-61.3813	1/1:133:0,133:0:0:133:4776:-320.799,-40.037,0	1/1:160:0,160:0:0:160:5728:-409.753,-48.1648,0	0/1:97:44,53:44:1567:53:1862:-87.9231,0,-111.949	1/1:99:1,98:1:36:98:3504:-215.411,-26.2037,0	1/1:15:0,15:0:0:15:518:-33.1694,-4.51545,0	1/1:101:0,101:0:0:101:3601:-240.406,-30.404,0	1/1:103:0,103:0:0:103:3679:-234.197,-31.0061,0	1/1:160:1,159:1:36:159:5679:-398.671,-44.5665,0	0/1:153:71,82:71:2530:82:2915:-164.608,0,-181.884	1/1:70:1,69:1:36:69:2434:-170.642,-17.4738,0	0/1:89:45,44:45:1574:44:1576:-83.8976,0,-115.137	0/1:177:88,89:88:3132:89:3168:-171.135,0,-228.818	0/1:46:25,21:25:900:21:756:-34.3473,0,-67.3673	0/1:105:52,53:52:1856:53:1884:-86.8376,0,-135.707	1/1:88:2,86:2:72:86:3077:-186.479,-19.6539,0	0/1:30:17,13:17:608:13:460:-23.229,0,-46.0211	0/1:110:53,57:53:1883:57:2040:-103.705,0,-136.633	0/1:89:59,30:59:2116:30:1064:-49.7541,0,-163.912	1/1:120:0,120:0:0:120:4244:-307.143,-36.1236,0	1/1:111:0,111:0:0:111:3973:-288.674,-33.4143,0
chr06	34412387	.	C	T	94476.3	PASS	AB=0.508815;ABP=5.76664;AC=140;AF=0.752688;AN=186;AO=6799;CIGAR=1X;DP=8829;DPB=8829;DPRA=31.9783;EPP=14740.8;EPPR=4382.89;GTI=2;LEN=1;MEANALT=1.05435;MQM=28.6564;MQMR=59.3798;NS=93;NUMALT=1;ODDS=1.40249;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241708;QR=72226;RO=2025;RPL=6796;RPP=14740.8;RPPR=4382.89;RPR=3;RUN=1;SAF=0;SAP=14766.9;SAR=6799;SRF=0;SRP=4400.24;SRR=2025;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:4,4:4:144:4:144:-6.88769,0,-10.9054	0/1:93:54,39:54:1927:39:1363:-58.8337,0,-145.695	0/1:100:46,54:46:1648:54:1912:-89.8312,0,-118.095	1/1:213:0,213:0:0:213:7600:-542.461,-64.1194,0	1/1:39:0,39:0:0:39:1385:-94.9326,-11.7402,0	1/1:46:0,46:0:0:46:1631:-101.923,-13.8474,0	1/1:82:1,81:1:36:81:2888:-202.278,-21.7037,0	0/1:150:77,73:77:2760:73:2579:-118.642,0,-203.465	1/1:64:0,64:0:0:64:2294:-145.624,-19.2659,0	0/1:134:61,73:61:2154:73:2589:-147.271,0,-153.295	0/1:56:23,33:23:828:33:1183:-65.9119,0,-57.3575	1/1:86:0,86:0:0:86:3045:-191.477,-25.8886,0	1/1:80:0,80:0:0:80:2876:-179.778,-24.0824,0	0/1:73:36,37:36:1292:37:1323:-66.2259,0,-93.8438	0/1:58:40,18:40:1421:18:644:-29.6772,0,-109.867	1/1:65:0,65:0:0:65:2336:-157.068,-19.567,0	1/1:77:0,77:0:0:77:2764:-172.759,-23.1793,0	1/1:62:0,62:0:0:62:2220:-139.193,-18.6639,0	0/1:42:21,21:21:752:21:741:-34.1299,0,-55.3611	0/1:165:72,93:72:2588:93:3249:-185.282,0,-182.953	1/1:108:2,106:2:72:106:3775:-249.791,-26.996,0	1/1:100:0,100:0:0:100:3549:-277.629,-30.103,0	0/1:95:53,41:53:1888:41:1426:-74.5827,0,-139.733	1/1:51:0,51:0:0:51:1824:-122.266,-15.3525,0	0/1:44:15,29:15:517:29:1028:-55.5509,0,-33.6093	1/1:364:0,364:0:0:364:12853:-994.551,-109.575,0	0/1:220:97,123:97:3468:123:4323:-225.548,0,-245.392	0/1:46:14,32:14:504:32:1152:-63.2748,0,-31.8507	0/1:293:141,152:141:4992:152:5417:-332.518,0,-361.097	0/1:95:51,43:51:1817:43:1474:-71.1745,0,-135.124	0/1:122:66,55:66:2347:55:1945:-99.1008,0,-174.703	1/1:1:0,1:0:0:1:36:-2.7362,-0.30103,0	1/1:10:0,10:0:0:10:360:-24.5694,-3.0103,0	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-2.55871,-0.30103,0	1/1:6:0,6:0:0:6:216:-13.5598,-1.80618,0	0/1:246:121,125:121:4311:125:4456:-271.781,0,-314.097	1/1:217:0,217:0:0:217:7681:-518.549,-65.3235,0	0/1:98:52,46:52:1860:46:1639:-74.6038,0,-137.926	0/1:6:2,4:2:72:4:144:-8.31777,0,-5.03054	0/1:140:74,66:74:2633:66:2366:-115.84,0,-193.574	1/1:70:0,70:0:0:70:2512:-169.016,-21.0721,0	0/1:79:40,39:40:1432:39:1367:-68.1899,0,-105.379	0/1:111:52,59:52:1860:59:2120:-116.316,0,-133.688	1/1:82:0,82:0:0:82:2935:-211.555,-24.6845,0	1/1:88:0,88:0:0:88:3135:-241.101,-26.4906,0	0/1:153:74,79:74:2647:79:2803:-128.174,0,-192.418	1/1:183:2,181:2:72:181:6350:-447.041,-49.2849,0	1/1:135:0,135:0:0:135:4840:-346.069,-40.6391,0	0/1:119:58,61:58:2079:61:2179:-121.867,0,-151.557	1/1:62:0,62:0:0:62:2187:-168.57,-18.6639,0	0/1:7:4,3:4:144:3:108:-6.02053,0,-11.2064	1/1:142:0,142:0:0:142:5074:-320.797,-42.7463,0	0/1:61:25,36:25:900:36:1277:-80.9444,0,-62.9578	0/1:30:16,14:16:572:14:504:-23.4647,0,-42.7825	0/1:122:52,70:52:1833:70:2466:-130.803,0,-128.485	1/1:43:0,42:0:0:42:1480:-107.977,-12.6433,0	0/1:3:1,2:1:36:2:72:-5.03182,0,-2.69518	1/1:12:0,12:0:0:12:424:-31.7108,-3.61236,0	0/1:20:14,6:14:504:6:212:-7.91736,0,-39.6775	1/1:152:1,151:1:36:151:5408:-385.869,-42.1583,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0748	1/1:239:1,238:1:32:238:8464:-646.419,-68.9225,0	1/1:179:4,175:4:144:175:6226:-438.049,-40.5732,0	0/1:39:17,22:17:612:22:784:-41.7101,0,-43.6733	0/1:96:54,42:54:1932:42:1459:-78.1157,0,-145.255	1/1:130:3,127:3:108:127:4495:-313.172,-29.0587,0	1/1:100:0,100:0:0:100:3506:-254.543,-30.103,0	1/1:21:0,21:0:0:21:756:-51.9878,-6.32163,0	1/1:67:0,67:0:0:67:2389:-149.35,-20.169,0	1/1:92:0,92:0:0:92:3291:-253.517,-27.6948,0	0/1:16:7,9:7:252:9:324:-15.9101,0,-18.2125	1/1:87:0,87:0:0:87:3070:-193.738,-26.1896,0	0/1:49:23,26:23:824:26:921:-44.7737,0,-59.6766	1/1:136:0,136:0:0:136:4850:-324.893,-40.9401,0	1/1:168:0,168:0:0:168:6017:-430.095,-50.573,0	0/1:100:44,56:44:1550:56:1979:-94.719,0,-109.661	1/1:99:1,98:1:36:98:3501:-214.923,-26.2037,0	1/1:15:0,15:0:0:15:535:-33.2721,-4.51545,0	1/1:104:0,104:0:0:104:3719:-248.157,-31.3071,0	1/1:105:0,105:0:0:105:3741:-237.292,-31.6082,0	1/1:162:1,161:1:36:161:5715:-403.841,-45.1686,0	0/1:150:69,81:69:2472:81:2906:-164.937,0,-177.577	1/1:71:0,71:0:0:71:2544:-179.624,-21.3731,0	0/1:90:46,44:46:1627:44:1580:-83.6828,0,-119.607	0/1:175:86,89:86:3073:89:3172:-173.786,0,-223.485	0/1:49:25,24:25:892:24:860:-38.7685,0,-65.8033	0/1:105:52,53:52:1860:53:1887:-87.2027,0,-136.067	1/1:88:1,87:1:36:87:3107:-194.466,-23.842,0	0/1:31:18,13:18:633:13:464:-22.8812,0,-47.3333	0/1:108:50,58:50:1796:58:2061:-106.07,0,-129.41	0/1:87:56,31:56:1985:31:1114:-53.3482,0,-152.728	1/1:123:1,122:1:36:122:4326:-309.08,-33.9722,0	1/1:115:1,113:1:36:113:4026:-290.05,-31.518,0
chr06	34414231	.	A	G	98160.4	PASS	AB=0.493927;ABP=3.88065;AC=143;AF=0.760638;AN=188;AO=4763;CIGAR=1X;DP=6151;DPB=6151;DPRA=66.129;EPP=10345.7;EPPR=3012.67;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.9591;MQMR=60;NS=94;NUMALT=1;ODDS=0.861213;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166763;QR=49313;RO=1386;RPL=4763;RPP=10345.7;RPPR=3012.67;RPR=0;RUN=1;SAF=4763;SAP=10345.7;SAR=0;SRF=1386;SRP=3012.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:40:26,14:26:920:14:500:-33.295,0,-71.0759	0/1:176:99,76:99:3519:76:2649:-185.612,0,-263.881	1/1:159:0,159:0:0:159:5575:-501.873,-47.8638,0	1/1:16:1,15:1:36:15:525:-43.9798,-1.21821,0	1/1:65:0,65:0:0:65:2281:-205.549,-19.567,0	1/1:53:0,53:0:0:53:1854:-167.137,-15.9546,0	0/1:61:28,33:28:974:33:1159:-85.9828,0,-69.6079	1/1:91:0,91:0:0:91:3186:-286.963,-27.3937,0	0/1:62:39,23:39:1384:23:805:-54.1036,0,-106.195	0/1:61:30,31:30:1059:31:1112:-82.0285,0,-77.2576	1/1:102:0,102:0:0:102:3488:-314.135,-30.7051,0	1/1:68:0,68:0:0:68:2351:-211.846,-20.47,0	0/1:58:32,26:32:1132:26:919:-65.5664,0,-84.7288	0/1:60:25,34:25:874:34:1195:-89.7342,0,-60.855	1/1:52:0,52:0:0:52:1826:-164.614,-15.6536,0	1/1:50:0,50:0:0:50:1763:-158.953,-15.0515,0	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	0/1:33:8,25:8:288:25:856:-67.417,0,-16.3334	0/1:85:37,48:37:1302:48:1686:-126.378,0,-91.8923	1/1:130:0,130:0:0:130:4533:-408.143,-39.1339,0	1/1:150:0,150:0:0:150:5269:-474.349,-45.1545,0	0/1:61:21,40:21:752:40:1417:-109.463,0,-49.6434	1/1:42:2,40:2:72:40:1381:-117.748,-5.80654,0	0/1:57:35,22:35:1252:22:788:-54.0861,0,-95.8264	1/1:143:0,143:0:0:143:4993:-449.52,-43.0473,0	0/1:156:84,72:84:3007:72:2476:-176.129,0,-223.9	0/1:23:17,6:17:612:6:212:-12.5011,0,-48.4897	0/1:192:113,79:113:4024:79:2792:-193.722,0,-304.55	0/1:99:43,56:43:1540:56:1984:-149.031,0,-109.091	0/1:89:49,40:49:1746:40:1414:-100.764,0,-130.631	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:8:0,8:0:0:8:271:-24.7194,-2.40824,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:17:0,17:0:0:17:594:-53.7856,-5.11751,0	0/1:164:86,78:86:3058:78:2747:-198.103,0,-226.08	1/1:95:0,95:0:0:95:3318:-298.76,-28.5979,0	0/1:61:29,32:29:1040:32:1139:-84.4556,0,-75.5515	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:66:30,36:30:1064:36:1221:-90.3171,0,-76.2037	1/1:35:0,35:0:0:35:1233:-111.272,-10.5361,0	0/1:23:10,13:10:360:13:464:-35.1738,0,-25.8206	0/1:44:24,20:24:864:20:694:-49.5351,0,-64.8372	1/1:52:0,52:0:0:52:1821:-164.169,-15.6536,0	1/1:66:0,66:0:0:66:2312:-208.338,-19.868,0	0/1:96:51,45:51:1824:45:1590:-114.49,0,-135.542	1/1:95:0,95:0:0:95:3356:-302.258,-28.5979,0	1/1:39:0,39:0:0:39:1376:-124.136,-11.7402,0	0/1:60:33,27:33:1180:27:951:-67.8425,0,-88.4462	1/1:121:0,121:0:0:121:4190:-377.281,-36.4246,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:98:0,98:0:0:98:3482:-313.592,-29.5009,0	0/1:37:21,16:21:747:16:564:-39.9522,0,-56.4162	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:126:56,70:56:2008:70:2400:-178.322,0,-143.064	1/1:18:0,18:0:0:18:620:-56.1201,-5.41854,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:65:20,45:20:708:45:1585:-123.371,0,-44.4786	1/1:79:1,78:1:32:78:2720:-241.843,-20.5821,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:73:0,73:0:0:73:2575:-231.998,-21.9752,0	1/1:95:1,94:1:36:94:3292:-292.901,-24.9996,0	0/1:43:18,25:18:648:25:880:-66.5734,0,-45.7076	0/1:50:17,33:17:608:33:1165:-90.1045,0,-40.0005	1/1:89:0,89:0:0:89:3113:-280.397,-26.7917,0	1/1:133:1,132:1:36:132:4585:-409.211,-36.4387,0	1/1:55:0,55:0:0:55:1934:-174.335,-16.5567,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:39:0,39:0:0:39:1359:-122.606,-11.7402,0	0/1:12:3,9:3:108:9:305:-24.1649,0,-6.46281	1/1:144:0,144:0:0:144:5066:-456.09,-43.3483,0	0/1:45:26,19:26:928:19:671:-47.1694,0,-70.2919	1/1:107:0,107:0:0:107:3785:-340.849,-32.2102,0	1/1:120:1,119:1:36:119:4206:-375.124,-32.5253,0	0/1:36:14,22:14:504:22:773:-59.0533,0,-34.861	1/1:37:0,37:0:0:37:1276:-115.135,-11.1381,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:83:0,83:0:0:83:2939:-264.743,-24.9855,0	1/1:100:1,99:1:32:99:3487:-310.832,-26.9037,0	1/1:169:0,169:0:0:169:5865:-527.97,-50.8741,0	0/1:30:16,14:16:568:14:500:-36.3053,0,-42.421	1/1:72:0,72:0:0:72:2525:-227.499,-21.6742,0	0/1:29:18,11:18:639:11:368:-24.7113,0,-49.1084	0/1:112:54,58:54:1912:58:2011:-147.543,0,-138.642	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:66:33,33:33:1154:33:1138:-82.8557,0,-84.2968	1/1:66:0,66:0:0:66:2269:-204.469,-19.868,0	0/1:50:29,21:29:1040:21:724:-50.4252,0,-78.8629	0/1:99:50,49:50:1762:49:1696:-123.118,0,-129.06	0/1:47:29,18:29:1028:18:644:-44.1422,0,-78.6846	1/1:58:2,56:2:72:56:1978:-171.456,-10.623,0	1/1:68:2,66:2:72:66:2298:-200.243,-13.6333,0
chr06	34423481	.	A	G	16938	PASS	AB=0.470326;ABP=20.1505;AC=46;AF=0.244681;AN=188;AO=1062;CIGAR=1X;DP=5150;DPB=5150;DPRA=0.93347;EPP=2300.44;EPPR=8849.61;GTI=1;LEN=1;MEANALT=1.02041;MQM=59.935;MQMR=59.9626;NS=94;NUMALT=1;ODDS=3.11917;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37746;QR=146153;RO=4086;RPL=0;RPP=2309.11;RPPR=8875.65;RPR=1062;RUN=1;SAF=1061;SAP=2300.44;SAR=1;SRF=4083;SRP=8849.61;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:12,25:12:428:25:885:-68.797,0,-27.7207	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	0/1:52:22,30:22:792:30:1076:-81.4993,0,-55.9521	0/0:132:132,0:132:4714:0:0:0,-39.736,-424.417	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/0:111:111,0:111:3996:0:0:0,-33.4143,-359.809	0/1:47:23,24:23:824:24:852:-62.852,0,-60.3349	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:56:29,27:29:1029:27:953:-69.2256,0,-76.0635	0/1:44:27,17:27:972:17:593:-40.4494,0,-74.5526	0/0:117:117,0:117:4212:0:0:0,-35.2205,-379.245	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.424	0/1:38:21,17:21:756:17:612:-43.9743,0,-56.9281	0/1:87:36,51:36:1296:51:1787:-134.912,0,-90.7543	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.608	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:29:29,0:29:1014:0:0:0,-8.72987,-91.5675	0/1:27:16,11:16:576:11:377:-26.1301,0,-44.0472	0/1:64:36,28:36:1296:28:1008:-71.7704,0,-97.678	0/0:130:130,0:130:4644:0:0:0,-39.1339,-418.121	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:62:36,26:36:1296:26:921:-64.5413,0,-98.2801	0/0:124:123,1:123:4379:1:36:0,-33.7294,-390.68	0/1:147:74,72:74:2641:72:2554:-185.798,0,-193.625	0/1:34:19,15:19:684:15:540:-38.7015,0,-51.6553	0/1:110:48,62:48:1724:62:2172:-162.629,0,-122.332	0/1:49:35,14:35:1252:14:500:-30.5857,0,-98.2346	0/1:47:26,21:26:921:21:756:-54.2188,0,-69.0568	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:162:85,77:85:3060:77:2768:-200.594,0,-226.861	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/1:46:28,18:28:1008:18:625:-42.7251,0,-77.189	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:52:31,21:31:1101:21:729:-50.2736,0,-83.7448	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:54:33,21:33:1180:21:752:-51.7506,0,-90.2524	0/1:69:38,31:38:1348:31:1116:-79.7529,0,-100.849	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.246	0/0:69:67,2:67:2369:2:64:0,-14.693,-207.389	0/1:36:24,12:24:864:12:432:-28.3841,0,-67.2455	0/0:68:68,0:68:2414:0:0:0,-20.47,-217.513	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/1:52:33,19:33:1173:19:684:-46.2368,0,-90.222	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.708	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:37:22,15:22:784:15:540:-37.7984,0,-59.7458	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:67:37,30:37:1317:30:1080:-77.3442,0,-98.6608	0/0:49:48,0:48:1709:0:0:0,-14.4494,-153.812	0/1:6:1,5:1:36:5:165:-13.3674,0,-1.79209	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:8:3,5:3:108:5:165:-12.7654,0,-7.66693	0/0:91:91,0:91:3242:0:0:0,-27.3937,-291.999	0/0:92:91,1:91:3242:1:36:0,-24.0965,-288.4	0/1:40:25,15:25:900:15:525:-35.5369,0,-69.2798	0/1:26:10,16:10:360:16:576:-44.3482,0,-24.9175	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:68:66,2:66:2376:2:72:0,-13.6333,-207.261	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/0:42:42,0:42:1485:0:0:0,-12.6433,-133.872	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.912	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.5996	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.952	0/1:73:42,31:42:1508:31:1108:-78.0558,0,-114.039	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.61	0/0:97:97,0:97:3462:0:0:0,-29.1999,-311.789	0/1:26:13,13:13:434:13:451:-33.093,0,-31.5507	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.72	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:41:41,0:41:1434:0:0:0,-12.3422,-129.352	0/0:105:105,0:105:3765:0:0:0,-31.6081,-339.042	0/1:64:32,32:32:1133:32:1144:-84.003,0,-83.0107	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/1:55:29,26:29:1044:26:905:-65.2061,0,-77.7182	0/1:115:56,59:56:1997:59:2094:-154.11,0,-145.383	0/1:17:9,8:9:320:8:269:-19.4186,0,-24.0248	0/1:75:43,32:43:1529:32:1148:-81.0168,0,-115.166	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:55:32,23:32:1137:23:824:-57.9267,0,-86.0803	0/1:77:32,45:32:1137:45:1620:-122.91,0,-79.4577	0/0:102:102,0:102:3659:0:0:0,-30.7051,-329.511	0/0:127:127,0:127:4557:0:0:0,-38.2308,-410.293
chr06	34423483	.	C	G	85852.9	PASS	AB=0.528226;ABP=18.4558;AC=142;AF=0.755319;AN=188;AO=4054;CIGAR=1X;DP=5117;DPB=5117;DPRA=27.5;EPP=8780.12;EPPR=2293.92;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9526;MQMR=59.9348;NS=94;NUMALT=1;ODDS=3.28775;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144010;QR=37837;RO=1059;RPL=0;RPP=8806.16;RPPR=2302.6;RPR=4054;RUN=1;SAF=4051;SAP=8780.12;SAR=3;SRF=1058;SRP=2293.92;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:25,12:25:883:12:394:-24.6363,0,-68.6179	0/1:27:14,13:14:504:13:449:-32.6097,0,-37.5703	0/1:52:30,22:30:1076:22:788:-55.5912,0,-81.4993	1/1:131:0,131:0:0:131:4692:-422.44,-39.4349,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:35:0,35:0:0:35:1237:-111.632,-10.5361,0	1/1:112:0,112:0:0:112:3964:-356.932,-33.7154,0	0/1:47:24,23:24:860:23:828:-60.6957,0,-63.5734	1/1:91:0,91:0:0:91:3211:-289.211,-27.3937,0	0/1:54:25,29:25:877:29:1035:-77.2074,0,-62.9896	0/1:42:17,25:17:612:25:877:-66.6019,0,-42.7702	1/1:114:0,114:0:0:114:4009:-360.984,-34.3174,0	1/1:89:0,89:0:0:89:3191:-287.402,-26.7917,0	0/1:38:17,21:17:608:21:744:-55.8452,0,-43.6129	0/1:88:52,36:52:1837:36:1284:-89.3728,0,-139.117	1/1:44:0,44:0:0:44:1576:-142.131,-13.2453,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:26:10,16:10:360:16:548:-41.8145,0,-24.9175	0/1:65:28,37:28:1008:37:1324:-99.8951,0,-71.4694	1/1:128:0,128:0:0:128:4556:-410.207,-38.5318,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:30:14,16:14:504:16:564:-42.0594,0,-36.6672	1/1:17:0,17:0:0:17:593:-53.6947,-5.11751,0	0/1:62:26,36:26:936:36:1277:-96.5672,0,-65.8956	1/1:124:1,123:1:36:123:4405:-393.02,-33.7294,0	0/1:145:72,73:72:2567:73:2605:-191.047,0,-187.63	0/1:34:15,19:15:540:19:661:-49.5766,0,-38.7015	0/1:110:61,49:61:2180:49:1719:-121.877,0,-163.353	0/1:50:15,35:15:540:35:1241:-96.941,0,-33.885	0/1:47:21,26:21:748:26:932:-70.0505,0,-53.4969	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:373:-33.8952,-3.31133,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:162:76,86:76:2727:86:3065:-227.311,0,-196.905	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:46:18,28:18:627:28:1000:-76.468,0,-42.907	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:51:21,30:21:752:30:1072:-81.4399,0,-52.6531	1/1:34:0,34:0:0:34:1200:-108.303,-10.235,0	0/1:54:21,33:21:747:33:1169:-89.2597,0,-51.2987	0/1:70:31,39:31:1112:39:1370:-102.523,0,-79.2121	1/1:49:0,49:0:0:49:1748:-157.601,-14.7505,0	1/1:69:0,69:0:0:69:2459:-221.564,-20.7711,0	0/1:36:12,24:12:432:24:849:-65.8907,0,-28.3841	1/1:67:0,67:0:0:67:2374:-213.915,-20.169,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:52:19,33:19:684:33:1184:-91.2148,0,-46.2368	1/1:57:0,57:0:0:57:2037:-183.596,-17.1587,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	0/1:37:15,22:15:540:22:784:-59.7452,0,-37.7984	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:68:31,37:31:1108:37:1316:-98.2718,0,-79.561	1/1:49:0,49:0:0:49:1684:-151.838,-14.7505,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/1:36:16,20:16:576:20:712:-53.5696,0,-41.3379	1/1:71:0,71:0:0:71:2537:-228.579,-21.3731,0	0/1:8:5,3:5:180:3:93:-6.26849,0,-14.1438	1/1:90:0,90:0:0:90:3185:-286.871,-27.0927,0	1/1:89:1,87:1:36:87:3105:-276.097,-23.2322,0	0/1:40:15,25:15:536:25:896:-68.9192,0,-36.5336	0/1:26:16,10:16:576:10:360:-24.9175,0,-44.3482	1/1:64:0,63:0:0:63:2237:-201.233,-18.9649,0	1/1:68:3,65:3:108:65:2325:-199.433,-10.3949,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:43:0,43:0:0:43:1526:-137.594,-12.9443,0	1/1:50:0,50:0:0:50:1781:-160.56,-15.0515,0	0/1:8:5,3:5:180:3:104:-7.29266,0,-14.1438	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:67:31,36:31:1107:36:1265:-93.9816,0,-79.7711	1/1:84:0,84:0:0:84:2935:-264.352,-25.2865,0	1/1:97:0,97:0:0:97:3472:-312.645,-29.1999,0	0/1:27:13,14:13:464:14:481:-35.4873,0,-33.9697	1/1:78:0,78:0:0:78:2784:-250.799,-23.4803,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:49:0,48:0:0:48:1700:-152.963,-14.4494,0	1/1:42:0,42:0:0:42:1485:-133.943,-12.6433,0	1/1:103:0,103:0:0:103:3658:-329.418,-31.0061,0	0/1:64:32,31:32:1126:31:1103:-80.3326,0,-82.3996	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	0/1:55:26,29:26:932:29:1040:-77.3577,0,-67.6422	0/1:116:59,57:59:2108:57:1995:-144.899,0,-155.07	0/1:16:8,8:8:279:8:284:-21.0869,0,-20.6311	0/1:75:32,43:32:1144:43:1536:-115.885,0,-80.6565	1/1:57:0,57:0:0:57:2029:-182.881,-17.1587,0	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	0/1:55:23,32:23:824:32:1141:-86.4427,0,-57.9267	0/1:76:45,31:45:1612:31:1112:-77.5131,0,-122.491	1/1:100:0,100:0:0:100:3561:-320.696,-30.103,0	1/1:123:0,123:0:0:123:4322:-389.153,-37.0267,0
chr06	34450355	.	A	G	51246.2	PASS	AB=0.51609;ABP=16.1477;AC=42;AF=0.228261;AN=184;AO=3035;CIGAR=1X;DP=13263;DPB=13263;DPRA=1.09081;EPP=6593.43;EPPR=22195.5;GTI=0;LEN=1;MEANALT=1.03846;MQM=59.9974;MQMR=59.9961;NS=92;NUMALT=1;ODDS=1.49206;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108045;QR=365877;RO=10224;RPL=0;RPP=6593.43;RPPR=22195.5;RPR=3035;RUN=1;SAF=0;SAP=6593.43;SAR=3035;SRF=0;SRP=22204.1;SRR=10224;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:99:45,54:45:1601:54:1932:-144.355,0,-114.576	0/1:116:63,53:63:2260:53:1873:-133.927,0,-168.743	0/1:498:268,230:268:9606:230:8211:-589.089,0,-714.577	0/0:423:423,0:423:15128:0:0:0,-127.336,-1361.24	0/0:131:129,2:129:4631:2:72:0,-32.5982,-410.114	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:96:96,0:96:3424:0:0:0,-28.8989,-308.372	0/1:182:83,99:83:2960:99:3541:-264.111,0,-211.844	0/0:145:145,0:145:5167:0:0:0,-43.6493,-465.17	0/1:67:34,33:34:1220:33:1188:-87.0596,0,-89.9378	0/1:40:26,14:26:936:14:504:-33.6569,0,-72.5183	0/0:134:134,0:134:4791:0:0:0,-40.338,-431.346	0/0:123:123,0:123:4402:0:0:0,-37.0267,-396.351	0/1:67:32,35:32:1144:35:1248:-92.4559,0,-83.1005	0/1:110:48,62:48:1719:62:2211:-166.141,0,-121.881	0/0:101:101,0:101:3585:0:0:0,-30.404,-322.858	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:33:15,18:15:540:18:640:-47.9953,0,-39.0025	0/1:305:152,153:152:5455:153:5434:-397.374,0,-399.262	0/0:211:211,0:211:7506:0:0:0,-63.5173,-675.585	0/0:376:376,0:376:13434:0:0:0,-113.187,-1208.85	0/1:242:119,123:119:4268:123:4358:-319.544,0,-311.448	0/0:89:87,2:87:3104:2:72:0,-19.9549,-272.751	0/1:176:86,90:86:3066:90:3208:-235.96,0,-223.187	0/0:421:421,0:421:15046:0:0:0,-126.734,-1353.87	0/1:331:140,191:140:5019:191:6798:-512.25,0,-352.214	0/1:56:32,24:32:1148:24:854:-60.3224,0,-86.7722	0/1:379:175,202:175:6276:202:7217:-535.818,0,-451.158	0/1:113:66,47:66:2372:47:1684:-117.831,0,-179.721	0/1:111:36,75:36:1296:75:2646:-204.969,0,-83.5296	.:.:.:.:.:.:.:.	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:256:117,139:117:4191:139:4930:-366.786,0,-300.307	0/0:263:263,0:263:9444:0:0:0,-79.1709,-849.916	0/1:57:22,35:22:788:35:1242:-94.925,0,-54.0861	.:.:.:.:.:.:.:.	0/1:162:90,71:90:3232:71:2504:-176.931,0,-242.424	0/0:41:41,0:41:1442:0:0:0,-12.3422,-130.074	0/1:303:132,171:132:4716:171:6105:-458.338,0,-333.388	0/1:76:46,30:46:1640:30:1080:-74.635,0,-125.01	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:218:218,0:218:7797:0:0:0,-65.6245,-701.759	0/1:239:106,133:106:3777:133:4756:-356.251,0,-268.183	0/0:301:301,0:301:10762:0:0:0,-90.61,-968.483	0/0:169:169,0:169:6042:0:0:0,-50.8741,-543.883	0/1:191:101,90:101:3636:90:3232:-233.603,0,-269.946	0/0:156:156,0:156:5595:0:0:0,-46.9607,-503.67	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:220:220,0:220:7891:0:0:0,-66.2266,-710.213	0/1:46:20,26:20:716:26:923:-69.5394,0,-50.9203	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:175:81,94:81:2893:94:3333:-247.508,0,-207.924	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:105:48,57:48:1705:57:2029:-151.273,0,-122.126	0/0:131:125,6:125:4469:6:212:0,-20.0101,-382.953	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:302:301,0:301:10788:0:0:0,-90.61,-970.609	0/0:184:183,1:183:6521:1:36:0,-51.7912,-583.375	0/1:75:47,28:47:1692:28:999:-67.6473,0,-129.99	0/1:166:77,89:77:2760:89:3151:-233.843,0,-198.671	0/0:303:302,1:302:10801:1:36:0,-87.6138,-968.167	0/0:230:228,2:228:8183:2:72:0,-62.4002,-729.643	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.665	0/0:54:54,0:54:1918:0:0:0,-16.2556,-172.896	0/1:34:29,5:29:1025:5:176:-5.95,0,-82.3257	0/0:171:170,1:170:6104:1:36:0,-47.8779,-545.86	0/1:114:57,57:57:2044:57:2029:-148.563,0,-149.914	0/0:175:175,0:175:6243:0:0:0,-52.6802,-561.965	0/0:375:373,2:373:13356:2:72:0,-106.05,-1194.99	0/1:238:119,119:119:4263:119:4220:-308.334,0,-312.202	0/0:110:109,1:109:3897:1:36:0,-29.515,-347.324	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:212:210,2:210:7540:2:72:0,-56.9816,-671.801	0/0:165:165,0:165:5910:0:0:0,-49.6699,-532.007	0/0:306:306,0:306:10958:0:0:0,-92.1152,-986.112	0/1:78:39,39:39:1400:39:1387:-101.648,0,-102.819	0/0:97:97,0:97:3475:0:0:0,-29.1999,-312.961	0/1:48:28,20:28:1008:20:696:-48.5102,0,-76.5869	0/1:196:96,100:96:3440:100:3569:-262.415,0,-250.811	0/1:35:19,16:19:676:16:543:-38.6526,0,-50.6319	0/1:100:34,66:34:1216:66:2331:-179.945,0,-79.6436	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:23:10,13:10:356:13:459:-34.7204,0,-25.4576	0/1:91:46,45:46:1656:45:1612:-117.976,0,-121.935	0/1:99:37,62:37:1332:62:2224:-170.622,0,-90.3804	0/0:222:222,0:222:7941:0:0:0,-66.8287,-714.713	0/0:147:147,0:147:5276:0:0:0,-44.2514,-474.974
chr06	34456667	.	G	A	12345.6	PASS	AB=0.311652;ABP=1002.59;AC=42;AF=0.223404;AN=188;AO=1020;CIGAR=1X;DP=8171;DPB=8171;DPRA=0.904046;EPP=2209.23;EPPR=9785.31;GTI=7;LEN=1;MEANALT=1.02174;MQM=59.9814;MQMR=59.9937;NS=94;NUMALT=1;ODDS=0.00891823;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36304;QR=255372;RO=7149;RPL=1019;RPP=2209.23;RPPR=9785.31;RPR=1;RUN=1;SAF=1020;SAP=2217.91;SAR=0;SRF=7149;SRP=15526.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:37,17:37:1311:17:612:-39.1578,0,-102.035	0/1:48:36,12:36:1296:12:428:-24.4094,0,-102.494	0/1:90:65,25:65:2312:25:900:-54.2283,0,-181.248	0/0:236:236,0:236:8423:0:0:0,-71.0431,-758.074	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.583	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/1:83:56,27:56:1984:27:968:-62.4519,0,-153.846	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/1:86:57,29:57:2044:29:1036:-67.6653,0,-158.343	0/1:53:32,21:32:1148:21:748:-51.6907,0,-87.6752	0/0:103:103,0:103:3668:0:0:0,-31.0061,-330.325	0/0:151:151,0:151:5385:0:0:0,-45.4555,-484.782	0/1:51:34,17:34:1216:17:612:-40.0609,0,-94.394	0/1:80:55,25:55:1976:25:888:-56.1566,0,-154.032	0/0:87:87,0:87:3072:0:0:0,-26.1896,-276.705	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:88:74,14:74:2647:14:504:-19.2075,0,-211.985	0/0:132:132,0:132:4715:0:0:0,-39.736,-424.51	0/0:135:135,0:135:4832:0:0:0,-40.639,-435.035	0/1:73:50,23:50:1773:23:815:-51.6947,0,-137.876	0/0:42:42,0:42:1488:0:0:0,-12.6433,-134.212	0/1:94:82,12:82:2926:12:421:-9.92665,0,-235.277	0/0:224:224,0:224:8016:0:0:0,-67.4307,-721.461	0/1:188:126,62:126:4498:62:2199:-141.582,0,-348.395	0/1:40:27,13:27:955:13:458:-29.5132,0,-74.2237	0/1:312:226,85:226:8050:85:3033:-179.22,0,-630.523	0/1:105:69,36:69:2463:36:1284:-84.2553,0,-190.316	0/1:82:52,30:52:1868:30:1076:-72.4669,0,-143.715	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:41:41,0:41:1444:0:0:0,-12.3422,-130.253	0/1:194:120,74:120:4286:74:2634:-178.907,0,-327.495	0/0:158:158,0:158:5676:0:0:0,-47.5627,-510.957	0/1:48:26,22:26:932:22:780:-56.0736,0,-69.7494	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:108:62,46:62:2219:46:1644:-115.737,0,-167.463	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:41:33,8:33:1175:8:284:-13.5611,0,-93.7147	0/1:50:29,21:29:1031:21:748:-52.5938,0,-78.0511	0/0:81:81,0:81:2874:0:0:0,-24.3834,-258.895	0/0:131:131,0:131:4676:0:0:0,-39.4349,-421.003	0/1:110:79,31:79:2831:31:1116:-67.6384,0,-221.915	0/0:184:184,0:184:6574:0:0:0,-55.3895,-591.713	0/0:115:114,0:114:4071:0:0:0,-34.3174,-366.217	0/1:100:75,25:75:2665:25:896:-50.8574,0,-209.992	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:107:107,0:107:3843:0:0:0,-32.2102,-346.064	0/1:33:21,12:21:756:12:432:-29.2765,0,-58.4332	0/1:14:10,4:10:360:4:140:-8.73016,0,-28.5299	0/1:120:90,30:90:3201:30:1072:-60.6673,0,-252.189	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/1:62:47,15:47:1692:15:540:-30.2727,0,-133.903	0/0:99:99,0:99:3528:0:0:0,-29.802,-317.728	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	0/0:261:261,0:261:9312:0:0:0,-78.5688,-838.048	0/0:164:163,1:163:5832:1:36:0,-45.7706,-521.393	0/1:62:44,18:44:1576:18:636:-38.9042,0,-123.468	0/1:78:55,23:55:1967:23:819:-50.5519,0,-153.824	0/0:126:126,0:126:4532:0:0:0,-37.9298,-408.045	0/0:135:134,1:134:4807:1:36:0,-37.0408,-429.185	0/0:42:42,0:42:1476:0:0:0,-12.6433,-133.132	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.664	0/1:29:21,8:21:744:8:269:-15.8063,0,-58.5545	0/0:184:182,2:182:6535:2:72:0,-48.5528,-581.393	0/1:121:79,42:79:2811:42:1489:-97.8779,0,-216.805	0/0:89:89,0:89:3175:0:0:0,-26.7917,-285.974	0/0:164:164,0:164:5862:0:0:0,-49.3689,-527.691	0/0:66:61,5:61:2171:5:176:0,-3.68296,-179.471	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:110:110,0:110:3931:0:0:0,-33.1133,-353.982	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:200:200,0:200:7147:0:0:0,-60.206,-643.288	0/1:50:32,18:32:1148:18:648:-43.6004,0,-88.5783	0/0:102:102,0:102:3631:0:0:0,-30.7051,-326.994	0/1:43:30,13:30:1080:13:457:-28.5191,0,-84.569	0/1:116:80,36:80:2829:36:1296:-82.0245,0,-219.927	0/1:25:21,4:21:752:4:144:-5.78787,0,-60.4805	0/1:69:53,16:53:1871:16:568:-30.6808,0,-147.895	0/0:90:90,0:90:3210:0:0:0,-27.0927,-289.122	0/1:51:36,15:36:1279:15:536:-33.2223,0,-100.06	0/1:118:71,47:71:2552:47:1646:-112.903,0,-194.408	0/1:61:31,30:31:1104:30:1032:-74.8237,0,-81.3078	0/0:159:159,0:159:5671:0:0:0,-47.8638,-510.511	0/0:131:131,0:131:4678:0:0:0,-39.4349,-421.181
chr06	34474999	.	A	G	23218.9	PASS	AB=0.514156;ABP=9.1583;AC=46;AF=0.247312;AN=186;AO=1827;CIGAR=1X;DP=8006;DPB=8006;DPRA=1.02464;EPP=3970.29;EPPR=13416.2;GTI=3;LEN=1;MEANALT=1.03704;MQM=33.7641;MQMR=35.5538;NS=93;NUMALT=1;ODDS=1.1994;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65368;QR=221262;RO=6177;RPL=1827;RPP=3970.29;RPPR=13416.2;RPR=0;RUN=1;SAF=0;SAP=3970.29;SAR=1827;SRF=0;SRP=13416.2;SRR=6177;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:21,23:21:756:23:828:-56.3023,0,-49.0698	0/1:131:74,57:74:2660:57:2052:-127.788,0,-182.709	0/1:98:44,54:44:1569:54:1940:-128.556,0,-97.9145	0/0:194:194,0:194:6960:0:0:0,-58.3998,-561.249	0/0:56:56,0:56:2008:0:0:0,-16.8577,-167.158	0/0:38:38,0:38:1364:0:0:0,-11.4391,-113.726	0/0:128:128,0:128:4588:0:0:0,-38.5318,-377.083	0/1:125:69,56:69:2472:56:2008:-123.759,0,-165.678	0/0:80:79,1:79:2832:1:36:0,-20.6948,-229.661	0/1:116:66,50:66:2356:50:1788:-113.331,0,-160.747	0/1:40:15,25:15:540:25:900:-53.4107,0,-28.9653	0/0:60:60,0:60:2139:0:0:0,-18.0618,-164.452	0/0:46:46,0:46:1627:0:0:0,-13.8474,-124.206	0/1:47:26,21:26:927:21:756:-41.0533,0,-56.9506	0/1:54:30,24:30:1076:24:860:-46.0582,0,-64.8428	0/0:51:51,0:51:1832:0:0:0,-15.3525,-138.69	0/0:67:67,0:67:2404:0:0:0,-20.169,-184.253	0/0:41:40,1:40:1440:1:36:0,-9.43946,-107.154	0/1:30:17,13:17:612:13:468:-25.2925,0,-38.0716	0/1:103:41,62:41:1472:62:2209:-144.712,0,-88.1945	0/0:131:131,0:131:4669:0:0:0,-39.4349,-382.769	0/0:36:36,0:36:1288:0:0:0,-10.8371,-105.988	0/1:91:44,47:44:1580:47:1676:-107.937,0,-99.7771	0/0:122:122,0:122:4380:0:0:0,-36.7257,-354.136	0/1:35:16,19:16:572:19:684:-41.17,0,-38.4668	0/0:295:295,0:295:10565:0:0:0,-88.8038,-870.576	0/1:216:102,114:102:3664:114:4060:-269.152,0,-236.492	0/1:33:14,19:14:504:19:676:-40.1579,0,-28.6469	0/1:160:78,81:78:2792:81:2904:-179.782,0,-171.297	0/1:161:88,73:88:3160:73:2624:-169.842,0,-208.331	0/1:125:67,58:67:2370:58:2075:-128.01,0,-157.717	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-17.1666	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.56353	0/1:4:3,1:3:108:1:36:-2.18348,0,-7.74633	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.696	0/1:180:94,86:94:3376:86:3067:-168.852,0,-201.451	0/0:224:223,1:223:7970:1:36:0,-64.0431,-665.247	0/1:47:25,22:25:900:22:783:-43.3444,0,-54.9343	0/1:4:1,3:1:36:3:100:-6.99958,0,-1.85042	0/1:135:59,76:59:2116:76:2708:-180.526,0,-132.476	0/0:24:24,0:24:860:0:0:0,-7.22472,-66.0059	0/1:106:40,66:40:1436:66:2321:-154.926,0,-85.2206	0/1:86:42,44:42:1508:44:1580:-88.6364,0,-89.068	0/0:55:55,0:55:1971:0:0:0,-16.5566,-147.247	0/0:125:125,0:125:4488:0:0:0,-37.6287,-374.002	0/1:93:28,65:28:1008:65:2328:-158.53,0,-55.0662	0/0:171:169,2:169:6017:2:72:0,-45.0397,-489.007	0/0:91:91,0:91:3260:0:0:0,-27.3937,-270.112	0/1:140:66,74:66:2356:74:2656:-173.619,0,-148.461	0/0:187:187,0:187:6713:0:0:0,-56.2926,-543.369	0/1:4:2,2:2:72:2:72:-5.26652,0,-4.45931	0/0:129:129,0:129:4636:0:0:0,-38.8329,-383.464	0/1:32:14,18:14:504:18:632:-41.592,0,-33.7173	0/1:12:2,10:2:72:10:360:-25.45,0,-2.95117	0/1:110:73,37:73:2605:37:1320:-71.8354,0,-175.57	0/0:39:39,0:39:1400:0:0:0,-11.7402,-113.988	0/1:2:1,1:1:36:1:36:-2.21902,0,-2.85243	0/0:13:13,0:13:468:0:0:0,-3.91339,-39.2748	0/1:46:26,20:26:932:20:720:-43.5591,0,-62.604	0/0:107:107,0:107:3823:0:0:0,-32.2102,-290.239	0/1:4:3,1:3:108:1:36:-1.69864,0,-7.14199	0/0:238:238,0:238:8516:0:0:0,-71.6451,-696.288	0/0:245:242,3:242:8677:3:108:0,-64.7196,-702.307	0/1:60:31,29:31:1116:29:1025:-65.3228,0,-73.8794	0/1:54:22,32:22:788:32:1148:-77.0357,0,-48.0786	0/0:122:121,1:121:4340:1:36:0,-33.8229,-356.297	0/0:73:73,0:73:2609:0:0:0,-21.9752,-215.202	0/0:16:16,0:16:576:0:0:0,-4.81648,-44.2908	0/0:54:54,0:54:1932:0:0:0,-16.2556,-159.679	0/0:94:94,0:94:3372:0:0:0,-28.2968,-255.426	0/1:14:4,10:4:144:10:356:-24.3021,0,-8.12899	0/0:81:81,0:81:2885:0:0:0,-24.3834,-240.639	0/1:73:37,36:37:1332:36:1284:-84.6255,0,-86.3819	0/0:137:137,0:137:4900:0:0:0,-41.2411,-396.439	0/0:165:165,0:165:5928:0:0:0,-49.6699,-486.379	0/1:120:59,61:59:2120:61:2188:-141.358,0,-132.551	0/0:96:95,1:95:3404:1:36:0,-25.5113,-275.198	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.4169	0/0:109:109,0:109:3876:0:0:0,-32.8123,-319.549	0/0:59:59,0:59:2120:0:0:0,-17.7608,-177.658	0/0:185:184,1:184:6574:1:36:0,-52.7878,-534.526	0/1:129:58,71:58:2069:71:2556:-146.33,0,-118.667	0/0:22:22,0:22:792:0:0:0,-6.62266,-60.0951	0/1:69:29,40:29:1040:40:1428:-83.2804,0,-58.1723	0/1:133:58,74:58:2084:74:2656:-153.027,0,-116.256	0/1:51:24,27:24:864:27:972:-55.4716,0,-50.5193	0/1:64:42,22:42:1503:22:784:-39.1544,0,-93.4584	0/0:51:51,0:51:1832:0:0:0,-15.3525,-140.83	0/1:13:6,7:6:212:7:252:-14.6643,0,-12.7441	0/1:79:37,42:37:1328:42:1512:-86.6546,0,-76.7744	0/1:59:16,43:16:576:43:1548:-94.2434,0,-25.9134	0/0:113:113,0:113:4060:0:0:0,-34.0164,-327.436	0/0:84:84,0:84:3016:0:0:0,-25.2865,-228.004
chr06	34488609	.	C	T	11784.5	PASS	AB=0.427332;ABP=87.5894;AC=47;AF=0.25;AN=188;AO=795;CIGAR=1X;DP=4442;DPB=4442;DPRA=0.800983;EPP=1729.33;EPPR=7905;GTI=5;LEN=1;MEANALT=1.04348;MQM=59.9774;MQMR=60;NS=94;NUMALT=1;ODDS=0.223799;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28092;QR=130107;RO=3643;RPL=795;RPP=1729.33;RPPR=7905;RPR=0;RUN=1;SAF=0;SAP=1729.33;SAR=795;SRF=0;SRP=7913.68;SRR=3643;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:62:35,27:35:1256:27:952:-67.3313,0,-94.6814	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/0:77:77,0:77:2753:0:0:0,-23.1793,-248.01	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8446	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:66:38,28:38:1341:28:1000:-70.4474,0,-101.12	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:78:47,30:47:1688:30:1022:-68.89,0,-128.815	0/1:36:23,13:23:820:13:468:-31.6226,0,-63.2854	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:44:27,17:27:960:17:593:-40.4494,0,-73.471	0/1:42:25,17:25:896:17:597:-41.4129,0,-68.3171	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:51:51,0:51:1805:0:0:0,-15.3525,-162.73	0/1:18:7,11:7:252:11:388:-29.8388,0,-17.6104	0/1:39:18,21:18:644:21:748:-55.9051,0,-46.5504	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:36:17,19:17:582:19:661:-48.9745,0,-41.8617	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:19:15,3:15:540:3:108:-4.2968,0,-43.1582	0/0:96:96,0:96:3413:0:0:0,-28.8989,-307.384	0/1:78:43,35:43:1527:35:1241:-88.5122,0,-114.242	0/1:24:18,6:18:640:6:216:-12.5658,0,-50.7046	0/1:76:41,35:41:1472:35:1252:-90.1068,0,-109.898	0/1:66:30,36:30:1076:36:1266:-94.3706,0,-77.2849	0/1:77:40,37:40:1428:37:1271:-91.5037,0,-105.638	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:128:82,46:82:2925:46:1652:-110.437,0,-224.952	0/0:109:108,0:108:3872:0:0:0,-32.5112,-348.315	0/1:30:18,12:18:631:12:424:-29.4655,0,-48.0848	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:38:19,19:19:675:19:669:-49.0948,0,-49.6378	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/1:39:25,14:25:883:14:500:-33.596,0,-68.0473	0/1:42:30,12:30:1068:12:417:-25.2178,0,-83.7888	0/0:40:40,0:40:1402:0:0:0,-12.0412,-126.473	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:28:16,12:16:572:12:424:-30.0676,0,-43.3846	0/0:81:78,3:78:2773:3:108:0,-14.3083,-239.735	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:84:47,37:47:1692:37:1320:-93.8154,0,-127.28	0/0:109:109,0:109:3889:0:0:0,-32.8123,-350.204	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:27:11,16:11:396:16:561:-42.6902,0,-27.8549	0/1:7:3,4:3:108:4:125:-9.45141,0,-7.96796	0/1:31:10,21:10:360:21:725:-56.2339,0,-23.4124	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/0:126:126,0:126:4472:0:0:0,-37.9298,-402.651	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/0:92:92,0:92:3262:0:0:0,-27.6948,-293.799	0/1:48:23,25:23:828:25:885:-65.5179,0,-60.3947	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:25:24,0:24:860:0:0:0,-7.22472,-77.5059	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/1:12:7,5:7:237:5:176:-12.5727,0,-18.0467	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:29:19,10:19:680:10:356:-23.6514,0,-52.7993	0/0:137:137,0:137:4879:0:0:0,-41.2411,-439.26	0/0:72:72,0:72:2548:0:0:0,-21.6742,-229.569	0/1:28:12,16:12:428:16:554:-41.7566,0,-30.43	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:106:67,39:67:2404:39:1369:-91.5949,0,-184.707	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:42:21,21:21:752:21:756:-55.724,0,-55.363	0/1:70:48,22:48:1724:22:784:-49.8118,0,-134.373	0/1:31:18,13:18:648:13:464:-32.7656,0,-49.32	0/1:51:32,19:32:1144:19:684:-46.5378,0,-87.917	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:12:9,3:9:315:3:108:-6.46281,0,-25.0749	0/1:72:46,26:46:1652:26:928:-62.1641,0,-127.294	0/1:36:11,25:11:396:25:888:-69.4019,0,-25.1457	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609
chr06	34488977	.	C	G	23002.6	PASS	AB=0.410413;ABP=276.137;AC=46;AF=0.244681;AN=188;AO=1620;CIGAR=1X;DP=10092;DPB=10092;DPRA=0.935108;EPP=3520.8;EPPR=18347.6;GTI=3;LEN=1;MEANALT=1.13208;MQM=59.9512;MQMR=59.987;NS=94;NUMALT=1;ODDS=0.670031;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56475;QR=294224;RO=8456;RPL=1620;RPP=3520.8;RPPR=18356.3;RPR=0;RUN=1;SAF=1620;SAP=3520.8;SAR=0;SRF=8455;SRP=18356.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:3,10:3:104:10:336:-26.6498,0,-5.78942	0/1:145:90,54:90:3069:54:1882:-125.945,0,-232.727	0/1:109:73,36:73:2551:36:1264:-81.2475,0,-197.028	0/0:357:355,0:355:12492:0:0:0,-106.866,-1123.5	0/0:106:105,1:105:3712:1:36:0,-28.3109,-330.682	0/0:36:36,0:36:1253:0:0:0,-10.8371,-113.07	0/0:150:149,1:149:5198:1:36:0,-41.5562,-464.366	0/1:199:132,67:132:4603:67:2362:-152.932,0,-354.532	0/0:66:64,0:64:2250:0:0:0,-19.2659,-202.401	0/1:136:77,59:77:2713:59:2069:-145.531,0,-203.474	0/1:36:20,16:20:690:16:534:-37.5385,0,-51.5822	0/0:73:73,0:73:2433:0:0:0,-21.9752,-219.225	0/0:52:51,0:51:1725:0:0:0,-15.3525,-155.207	0/1:58:26,32:26:872:32:1113:-83.0147,0,-61.3246	0/1:48:25,23:25:859:23:772:-55.3399,0,-63.174	0/0:52:52,0:52:1755:0:0:0,-15.6536,-158.228	0/0:70:70,0:70:2350:0:0:0,-21.0721,-211.754	0/0:55:55,0:55:1823:0:0:0,-16.5566,-164.341	0/1:23:12,11:12:407:11:362:-25.9747,0,-30.0318	0/1:190:120,70:120:4152:70:2442:-162.838,0,-316.669	0/0:150:149,0:149:5211:0:0:0,-44.8535,-468.775	0/0:149:149,0:149:5131:0:0:0,-44.8535,-461.94	0/1:118:67,51:67:2383:51:1791:-125.95,0,-179.206	0/0:129:128,1:128:4448:1:36:0,-35.2346,-396.896	0/1:35:15,20:15:518:20:712:-53.8706,0,-36.4095	0/0:409:408,1:408:14326:1:36:0,-119.523,-1285.53	0/1:206:116,89:116:4051:89:3113:-218.313,0,-302.714	0/1:31:16,15:16:555:15:507:-36.6196,0,-40.9441	0/1:230:161,69:161:5630:69:2454:-151.874,0,-437.592	0/1:125:77,47:77:2697:47:1665:-112.448,0,-205.286	0/1:113:66,47:66:2349:47:1644:-114.229,0,-177.651	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/1:179:91,87:91:3048:87:2981:-214.582,0,-220.61	0/0:261:260,0:260:9125:0:0:0,-78.2678,-820.879	0/1:36:19,17:19:650:17:582:-41.8643,0,-47.9818	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:115:65,50:65:2244:50:1774:-125.323,0,-167.598	0/0:20:19,0:19:676:0:0:0,-5.71957,-60.7067	0/1:145:103,41:103:3625:41:1460:-87.9874,0,-282.748	0/1:69:41,28:41:1416:28:931:-63.3196,0,-106.962	0/0:46:46,0:46:1603:0:0:0,-13.8474,-144.559	0/0:116:116,0:116:4055:0:0:0,-34.9195,-365.141	0/1:158:87,71:87:3027:71:2466:-174.625,0,-225.095	0/0:283:282,1:282:9747:1:36:0,-81.5932,-873.582	0/0:140:140,0:140:4904:0:0:0,-42.1442,-441.514	0/1:171:133,38:133:4678:38:1348:-70.1441,0,-369.708	0/0:201:201,0:201:6964:0:0:0,-60.507,-626.838	0/1:5:4,1:4:129:1:36:-2.09312,0,-10.4225	0/0:156:156,0:156:5488:0:0:0,-46.9607,-494.048	0/1:42:19,23:19:665:23:800:-59.6725,0,-47.5295	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/1:127:77,50:77:2650:50:1747:-119.28,0,-200.515	0/0:52:51,1:51:1797:1:36:0,-12.0553,-158.412	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:57:35,22:35:1222:22:784:-53.7252,0,-93.1233	0/0:89:89,0:89:3062:0:0:0,-26.7917,-275.812	0/1:7:4,3:4:140:3:99:-7.12937,0,-10.8374	0/0:437:437,0:437:15251:0:0:0,-131.55,-1372.34	0/0:266:265,1:265:9395:1:36:0,-76.4757,-841.922	0/1:75:47,28:47:1632:28:980:-65.9329,0,-124.588	0/1:101:79,22:79:2740:22:779:-40.028,0,-216.436	0/0:208:204,3:204:7144:3:99:0,-53.429,-633.782	0/0:120:120,0:120:4205:0:0:0,-36.1236,-378.636	0/0:17:17,0:17:583:0:0:0,-5.11751,-52.7924	0/0:99:99,0:99:3430:0:0:0,-29.802,-308.914	0/0:87:87,0:87:2971:0:0:0,-26.1896,-267.625	0/1:16:7,9:7:248:9:316:-23.9624,0,-17.8477	0/0:117:117,0:117:4082:0:0:0,-35.2205,-367.566	0/1:39:16,23:16:528:23:811:-61.5698,0,-36.0933	0/0:142:142,0:142:4942:0:0:0,-42.7463,-444.933	0/0:191:191,0:191:6697:0:0:0,-57.4967,-602.813	0/1:122:71,50:71:2524:50:1781:-123.786,0,-190.625	0/0:236:236,0:236:8233:0:0:0,-71.0431,-740.995	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:132:132,0:132:4618:0:0:0,-39.736,-415.786	0/0:159:159,0:159:5468:0:0:0,-47.8638,-492.228	0/0:250:250,0:250:8692:0:0:0,-75.2575,-782.289	0/1:83:40,43:40:1380:43:1508:-111.026,0,-99.5085	0/0:55:55,0:55:1829:0:0:0,-16.5566,-164.882	0/1:110:55,55:55:1837:55:1880:-136.361,0,-132.491	0/1:155:76,79:76:2647:79:2694:-195.999,0,-191.818	0/1:44:26,18:26:911:18:626:-43.418,0,-69.0596	0/1:59:22,37:22:728:37:1255:-95.4851,0,-48.0653	0/0:65:64,0:64:2164:0:0:0,-19.2659,-194.664	0/1:17:8,9:8:284:9:311:-23.2062,0,-20.7858	0/1:66:39,27:39:1357:27:931:-64.2336,0,-102.558	0/1:84:34,50:34:1175:50:1767:-134.026,0,-80.7668	0/0:230:230,0:230:7944:0:0:0,-69.2369,-714.997	0/0:80:80,0:80:2766:0:0:0,-24.0824,-249.184
chr06	34501881	.	C	T	110226	PASS	AB=0.566903;ABP=107.319;AC=142;AF=0.763441;AN=186;AO=5089;CIGAR=1X;DP=6257;DPB=6257;DPRA=0;EPP=10915.1;EPPR=2468.11;GTI=4;LEN=1;MEANALT=1.01075;MQM=59.9803;MQMR=60;NS=93;NUMALT=1;ODDS=5.41236;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182219;QR=41739;RO=1167;RPL=16;RPP=10915.1;RPPR=2468.11;RPR=5073;RUN=1;SAF=5089;SAP=11053.6;SAR=0;SRF=1167;SRP=2537.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/1:70:31,39:31:1108:39:1396:-104.867,0,-78.9589	0/1:95:53,42:53:1879:42:1487:-105.525,0,-140.79	1/1:106:0,106:0:0:106:3781:-340.488,-31.9092,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:129:0,129:0:0:129:4607:-414.793,-38.8329,0	0/1:72:23,49:23:828:49:1756:-136.65,0,-53.17	1/1:103:0,103:0:0:103:3670:-330.504,-31.0061,0	0/1:99:34,65:34:1215:65:2306:-177.986,0,-79.8538	0/1:36:19,17:19:684:17:608:-44.2149,0,-51.0532	1/1:90:0,90:0:0:90:3240:-291.82,-27.0927,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	0/1:40:16,24:16:572:24:864:-66.0414,0,-39.7722	0/1:68:34,34:34:1224:34:1220:-89.6368,0,-89.997	1/1:42:0,42:0:0:42:1503:-135.564,-12.6433,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:22:13,9:13:468:9:320:-22.5197,0,-35.837	0/1:104:55,49:55:1976:49:1760:-127.377,0,-146.808	1/1:77:0,77:0:0:77:2751:-247.56,-23.1793,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:74:35,39:35:1260:39:1392:-103.303,0,-91.4293	1/1:79:0,79:0:0:79:2827:-254.668,-23.7814,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:197:0,197:0:0:197:7010:-630.964,-59.3029,0	0/1:157:68,89:68:2431:89:3196:-240.601,0,-171.783	0/1:34:20,14:20:701:14:504:-35.4631,0,-53.1767	0/1:193:55,138:55:1959:138:4936:-386.29,0,-118.486	0/1:78:31,47:31:1108:47:1684:-128.367,0,-76.5507	0/1:47:13,34:13:468:34:1220:-95.9584,0,-28.3112	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:19:0,19:0:0:19:667:-60.3546,-5.71957,0	1/1:3:0,3:0:0:3:100:-9.33044,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:163:75,88:75:2688:88:3153:-234.926,0,-193.097	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:44:17,27:17:612:27:964:-73.8315,0,-42.1681	.:.:.:.:.:.:.:.	0/1:71:30,41:30:1068:41:1476:-111.763,0,-75.0589	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:60:21,39:21:735:39:1391:-107.426,0,-48.4096	0/1:55:25,30:25:896:30:1076:-80.5962,0,-64.4037	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:44:10,34:10:360:34:1224:-97.2217,0,-19.499	1/1:150:4,146:4:144:146:5252:-459.5,-31.8409,0	1/1:76:1,75:1:36:75:2696:-239.286,-19.28,0	0/1:58:32,26:32:1148:26:936:-67.0997,0,-86.1701	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:85:29,56:29:1036:56:1993:-154.031,0,-67.9664	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:91:34,56:34:1224:56:1979:-151.077,0,-83.1601	1/1:77:0,77:0:0:77:2763:-248.911,-23.1793,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:209:0,209:0:0:209:7488:-673.962,-62.9153,0	1/1:122:0,122:0:0:122:4376:-394.013,-36.7257,0	0/1:60:18,42:18:648:42:1508:-117.953,0,-40.5901	0/1:37:12,25:12:424:25:900:-70.1829,0,-27.3583	1/1:117:0,117:0:0:117:4190:-377.281,-35.2205,0	1/1:121:0,121:0:0:121:4348:-391.493,-36.4246,0	1/1:37:0,37:0:0:37:1318:-118.921,-11.1381,0	1/1:47:0,47:0:0:47:1665:-150.135,-14.1484,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:30:10,20:10:360:20:720:-56.0979,0,-23.7134	1/1:103:0,103:0:0:103:3674:-330.863,-31.0061,0	0/1:95:31,64:31:1116:64:2287:-177.493,0,-72.1538	1/1:77:0,77:0:0:77:2747:-247.471,-23.1793,0	1/1:161:0,161:0:0:161:5780:-520.313,-48.4658,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:145:0,145:0:0:145:5168:-465.257,-43.6494,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:121:0,121:0:0:121:4340:-390.774,-36.4246,0	1/1:52:0,52:0:0:52:1857:-167.408,-15.6536,0	1/1:95:0,95:0:0:95:3408:-306.934,-28.5979,0	0/1:59:27,32:27:968:32:1152:-86.2294,0,-69.6766	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	0/1:35:16,19:16:568:19:671:-50.1789,0,-40.9158	0/1:114:65,49:65:2336:49:1756:-124.007,0,-176.182	0/1:26:13,13:13:464:13:468:-34.6329,0,-34.2707	0/1:48:21,27:21:744:27:968:-72.9879,0,-52.8349	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	0/1:42:20,22:20:712:22:776:-57.5167,0,-51.7634	0/1:109:66,43:66:2359:43:1536:-105.721,0,-179.756	0/1:65:48,17:48:1704:17:612:-35.8014,0,-134.076	1/1:183:1,182:1:36:182:6536:-584.722,-51.4902,0	1/1:95:0,95:0:0:95:3394:-305.675,-28.5979,0
chr06	34821794	.	ATAT	TTAT,TTAC	381962	PASS	AB=0.507558,0.489949;ABP=6.19425,8.64151;AC=142,46;AF=0.755319,0.244681;AN=188;AO=10696,3171;CIGAR=1X3M,1X2M1X;DP=13906;DPB=13906.2;DPRA=11.4913,1.04622;EPP=23229.1,6880.07;EPPR=22.5536;GTI=2;LEN=1,4;MEANALT=1.8172,2.26;MQM=59.9867,59.62;MQMR=60;NS=94;NUMALT=2;ODDS=1.86551;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=382546,111497;QR=265;RO=9;RPL=5650,1712;RPP=77.0742,46.8431;RPPR=5.18177;RPR=5046,1459;RUN=1,1;SAF=5650,1713;SAP=77.0742,47.5388;SAR=5046,1458;SRF=6;SRP=5.18177;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:72:0,24,46:0:0:24,46:851,1600:-199.421,-130.088,-122.863,-69.3437,0,-55.4964	1/2:226:0,109,116:0:0:109,116:3890,4129:-653.741,-336.616,-303.804,-317.269,0,-282.35	1/2:216:0,108,106:0:0:108,106:3869,3754:-621.424,-305.887,-273.376,-315.626,0,-283.716	1/1:309:0,309,0:0:0:309,0:11079,0:-996.998,-93.0183,0,-996.998,-93.0183,-996.998	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/1:25:0,25,0:0:0:25,0:879,0:-79.4268,-7.52575,0,-79.4268,-7.52575,-79.4268	1/1:173:0,171,2:0:0:171,2:6114,72:-549.999,-51.4761,0,-544.125,-45.2415,-543.523	1/2:250:0,137,112:0:0:137,112:4884,3898:-714.947,-316.828,-275.587,-398.22,0,-364.504	1/1:209:0,209,0:0:0:209,0:7485,0:-673.691,-62.9153,0,-673.691,-62.9153,-673.691	1/2:217:0,107,110:0:0:107,110:3821,3826:-622.94,-311.42,-279.21,-311.872,0,-278.759	1/2:82:0,31,51:0:0:31,51:1116,1803:-238.237,-147.174,-137.842,-91.4198,0,-76.0672	1/1:159:0,159,0:0:0:159,0:5692,0:-512.398,-47.8638,0,-512.398,-47.8638,-512.398	1/1:149:0,147,0:0:0:147,0:5245,0:-471.837,-44.2514,0,-471.837,-44.2514,-471.837	1/2:162:0,85,77:0:0:85,77:3044,2685:-466.896,-218.647,-193.06,-248.602,0,-225.423	1/2:144:1,87,56:1:35:87,56:3111,1940:-408.125,-154.75,-131.408,-250.829,0,-236.819	1/1:105:0,105,0:0:0:105,0:3764,0:-338.931,-31.6082,0,-338.931,-31.6082,-338.931	1/1:119:0,119,0:0:0:119,0:4237,0:-381.507,-35.8226,0,-381.507,-35.8226,-381.507	1/1:82:0,82,0:0:0:82,0:2944,0:-265.193,-24.6845,0,-265.193,-24.6845,-265.193	1/2:57:0,26,31:0:0:26,31:921,1110:-165.745,-90.722,-82.8952,-75.3784,0,-66.0465	1/2:211:0,101,110:0:0:101,110:3619,3893:-612.555,-317.4,-286.996,-295.511,0,-262.398	1/1:324:0,324,0:0:0:324,0:11610,0:-1044.76,-97.5337,0,-1044.76,-97.5337,-1044.76	1/1:55:0,55,0:0:0:55,0:1976,0:-178.115,-16.5567,0,-178.115,-16.5567,-178.115	1/2:148:0,74,74:0:0:74,74:2644,2590:-426.639,-211.062,-188.786,-215.931,0,-193.654	1/1:156:0,156,0:0:0:156,0:5591,0:-503.311,-46.9607,0,-503.311,-46.9607,-503.311	1/2:109:0,59,50:0:0:59,50:2116,1756:-315.646,-143.052,-125.292,-172.948,0,-157.896	1/1:317:0,315,0:0:0:315,0:11259,0:-1012.88,-94.8245,0,-1012.88,-94.8245,-1012.88	1/2:465:0,254,210:0:0:254,210:9098,7422:-1346.37,-604.397,-527.936,-741.971,0,-678.755	1/2:53:0,29,24:0:0:29,24:1039,843:-153.67,-68.9298,-60.1999,-85.0945,0,-77.8697	1/2:357:0,173,184:0:0:173,184:6216,6501:-1036.88,-529.778,-477.699,-507.455,0,-452.066	1/2:185:0,93,92:0:0:93,92:3321,3241:-534.712,-263.956,-235.96,-271.111,0,-243.416	1/2:185:0,93,91:0:0:93,91:3328,3200:-531.841,-260.454,-232.459,-271.381,0,-243.988	1/1:10:0,10,0:0:0:10,0:349,0:-31.7446,-3.0103,0,-31.7446,-3.0103,-31.7446	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/2:289:0,143,146:0:0:143,146:5116,5157:-837.497,-420.32,-377.273,-417.532,0,-373.582	1/1:154:0,152,0:0:0:152,0:5448,0:-490.172,-45.7566,0,-490.172,-45.7566,-490.172	1/2:89:0,46,43:0:0:46,43:1652,1480:-255.221,-120.451,-106.604,-135.121,0,-122.177	1/2:5:0,4,1:0:0:4,1:140,36:-14.6799,-3.29724,-2.09312,-11.7405,0,-11.4394	1/2:199:0,96,102:0:0:96,102:3448,3572:-571.665,-290.386,-261.488,-281.276,0,-250.571	1/1:43:0,43,0:0:0:43,0:1548,0:-139.613,-12.9443,0,-139.613,-12.9443,-139.613	1/2:179:0,91,88:0:0:91,88:3253,3074:-515.614,-250.372,-222.978,-265.596,0,-239.105	1/2:107:0,47,60:0:0:47,60:1684,2119:-310.213,-172.87,-158.722,-137.699,0,-119.637	1/1:119:0,119,0:0:0:119,0:4257,0:-383.307,-35.8226,0,-383.307,-35.8226,-383.307	1/1:154:0,154,0:0:0:154,0:5508,0:-495.844,-46.3586,0,-495.844,-46.3586,-495.844	1/2:176:0,101,75:0:0:101,75:3570,2614:-502.958,-212.207,-181.803,-291.101,0,-268.524	1/1:192:0,188,4:0:0:188,4:6710,138:-603.628,-56.5936,0,-592.417,-45.0379,-591.213	1/1:206:1,205,0:1:25:205,0:7334,0:-657.606,-59.5123,0,-657.907,-61.7112,-659.856	1/2:238:0,126,112:0:0:126,112:4528,3949:-691.272,-321.872,-283.942,-369.756,0,-336.04	1/1:177:1,175,0:1:30:175,0:6278,0:-562.081,-50.3116,0,-562.382,-52.6803,-564.78	1/2:8:0,1,7:0:0:1,7:36,251:-23.5379,-20.5998,-20.2988,-3.29724,0,-1.19003	1/1:175:0,174,0:0:0:174,0:6218,0:-559.465,-52.3792,0,-559.465,-52.3792,-559.465	1/2:84:0,33,50:0:0:33,50:1184,1743:-238.302,-141.722,-131.788,-96.5745,0,-81.523	1/2:9:0,6,3:0:0:6,3:216,103:-26.3423,-8.70671,-6.90053,-17.9843,0,-17.0812	1/2:261:0,133,128:0:0:133,128:4764,4524:-756.88,-368.356,-328.319,-388.52,0,-349.988	1/1:79:0,79,0:0:0:79,0:2814,0:-253.499,-23.7814,0,-253.499,-23.7814,-253.499	1/2:11:0,6,5:0:0:6,5:216,166:-31.4014,-13.7617,-11.9555,-17.9843,0,-16.4792	1/1:37:0,37,0:0:0:37,0:1319,0:-119.011,-11.1381,0,-119.011,-11.1381,-119.011	1/2:210:0,109,101:0:0:109,101:3879,3568:-606.932,-290.795,-257.983,-316.491,0,-286.087	1/1:143:0,143,0:0:0:143,0:5114,0:-460.402,-43.0473,0,-460.402,-43.0473,-460.402	2/2:13:0,0,13:0:0:0,13:0,460:-41.7353,-41.7353,-41.7353,-3.91339,-3.91339,0	1/1:160:0,160,0:0:0:160,0:5715,0:-514.468,-48.1648,0,-514.468,-48.1648,-514.468	1/1:310:2,307,0:2:55:307,0:10974,0:-982.302,-88.1254,0,-982.904,-92.4162,-987.251	1/2:117:0,69,48:0:0:69,48:2464,1681:-337.988,-137.097,-116.326,-201.243,0,-186.794	1/2:92:0,48,44:0:0:48,44:1705,1522:-262.887,-123.971,-109.521,-139.267,0,-126.022	1/1:289:0,289,0:0:0:289,0:10352,0:-931.582,-86.9977,0,-931.582,-86.9977,-931.582	1/1:216:0,211,5:0:0:211,5:7545,174:-678.741,-63.5173,0,-664.593,-49.0212,-663.088	1/1:86:0,85,0:0:0:85,0:3016,0:-271.31,-25.5876,0,-271.31,-25.5876,-271.31	1/1:133:0,133,0:0:0:133,0:4751,0:-427.739,-40.037,0,-427.739,-40.037,-427.739	1/1:108:0,108,0:0:0:108,0:3856,0:-347.231,-32.5112,0,-347.231,-32.5112,-347.231	1/2:42:0,26,16:0:0:26,16:932,565:-122.38,-46.3631,-38.5363,-76.3721,0,-71.5556	1/1:198:0,198,0:0:0:198,0:7059,0:-635.371,-59.6039,0,-635.371,-59.6039,-635.371	1/2:252:0,121,130:0:0:121,130:4335,4523:-721.353,-367.824,-331.399,-353.601,0,-314.467	1/1:336:2,332,0:2:60:332,0:11882,0:-1063.53,-95.1472,0,-1064.13,-99.942,-1068.93	1/1:269:0,267,1:0:0:267,1:9571,36:-860.983,-80.375,0,-858.046,-77.4376,-857.745	1/2:46:0,15,31:0:0:15,31:540,1114:-135.297,-91.2357,-86.7202,-44.4211,0,-35.0892	1/1:273:0,271,2:0:0:271,2:9673,72:-870.156,-81.5791,0,-864.282,-75.3445,-863.68	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:215:0,215,0:0:0:215,0:7666,0:-689.974,-64.7215,0,-689.974,-64.7215,-689.974	1/1:170:0,170,0:0:0:170,0:6059,0:-545.413,-51.1751,0,-545.413,-51.1751,-545.413	1/1:396:0,394,0:0:0:394,0:14114,0:-1269.71,-118.606,0,-1269.71,-118.606,-1269.71	1/2:131:0,73,58:0:0:73,58:2624,2021:-378.754,-164.675,-142.7,-214.432,0,-196.972	1/1:149:1,148,0:1:24:148,0:5320,0:-476.523,-42.4536,0,-476.824,-44.5524,-478.682	1/2:128:0,70,57:0:0:70,57:2503,2016:-368.288,-164.193,-143.121,-204.09,0,-186.931	1/2:208:0,113,95:0:0:113,95:4059,3362:-605.285,-274.163,-240.146,-331.479,0,-302.881	1/2:57:1,30,26:1:36:30,26:1044,914:-155.946,-71.3609,-65.2677,-81.9388,0,-77.0498	1/1:123:0,122,0:0:0:122,0:4352,0:-391.533,-36.7257,0,-391.533,-36.7257,-391.533	1/1:126:0,126,0:0:0:126,0:4507,0:-405.798,-37.9298,0,-405.798,-37.9298,-405.798	1/2:83:0,45,37:0:0:45,37:1620,1303:-238.273,-106.083,-92.537,-132.272,0,-121.134	1/2:119:0,73,46:0:0:73,46:2612,1622:-345.391,-132.392,-110.417,-213.353,0,-199.505	1/2:131:0,38,92:0:0:38,92:1360,3247:-375.304,-264.399,-252.959,-110.902,0,-83.2069	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/1:171:0,171,0:0:0:171,0:6086,0:-547.843,-51.4761,0,-547.843,-51.4761,-547.843
chr06	34821828	.	TGT	GGT	22919.7	PASS	AB=0.479116;ABP=13.9846;AC=47;AF=0.252688;AN=186;AO=1414;CIGAR=1X2M;DP=6572;DPB=6571.67;DPRA=0.964853;EPP=3047.47;EPPR=11025.8;GTI=1;LEN=1;MEANALT=1.16327;MQM=59.9625;MQMR=59.9786;NS=93;NUMALT=1;ODDS=1.11777;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50286;QR=181075;RO=5136;RPL=1412;RPP=3056.13;RPPR=11025.8;RPR=2;RUN=1;SAF=1;SAP=3064.79;SAR=1413;SRF=0;SRP=11155.7;SRR=5136;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:12,37:12:422:37:1311:-103.54,0,-23.5638	0/1:76:31,45:31:1100:45:1616:-122.852,0,-76.4314	0/1:101:47,54:47:1673:54:1918:-142.492,0,-120.453	0/0:181:179,0:179:6320:0:0:0,-53.8844,-568.539	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:77:75,2:75:2655:2:72:0,-16.3426,-232.358	0/1:85:47,38:47:1618:38:1347:-95.9303,0,-120.318	0/0:127:127,0:127:4477:0:0:0,-38.2308,-403.102	0/1:105:51,52:51:1782:52:1847:-135.182,0,-129.334	0/1:25:6,19:6:214:19:684:-54.3646,0,-12.082	0/0:98:98,0:98:3485:0:0:0,-29.5009,-313.862	0/0:83:83,0:83:2960:0:0:0,-24.9855,-266.634	0/1:43:23,20:23:826:20:707:-51.0103,0,-61.7195	0/1:70:42,28:42:1487:28:983:-67.7104,0,-113.05	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.544	0/0:33:33,0:33:1159:0:0:0,-9.93399,-104.616	0/0:33:33,0:33:1157:0:0:0,-9.93399,-104.435	0/1:23:8,15:8:288:15:536:-41.6511,0,-19.3437	0/1:116:63,52:63:2221:52:1857:-132.509,0,-165.254	0/0:170:170,0:170:6010:0:0:0,-51.1751,-541.011	0/0:33:32,0:32:1144:0:0:0,-9.63296,-102.91	0/1:79:41,38:41:1446:38:1356:-98.5142,0,-106.654	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9347	0/1:66:37,29:37:1311:29:1035:-73.5951,0,-98.4234	0/0:152:152,0:152:5344:0:0:0,-45.7566,-480.4	0/1:240:136,104:136:4829:104:3698:-260.72,0,-362.52	0/1:29:16,13:16:570:13:459:-32.9142,0,-42.9031	0/1:179:99,80:99:3481:80:2843:-202.224,0,-259.62	0/1:59:37,22:37:1295:22:788:-53.484,0,-99.0893	0/1:75:40,35:40:1420:35:1244:-89.6874,0,-105.519	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:169:0:0:0,-1.50515,-15.542	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0836	0/1:155:78,76:78:2753:76:2724:-198.825,0,-201.435	0/0:64:63,0:63:2235:0:0:0,-18.9649,-201.055	0/1:37:19,15:19:660:15:519:-36.4443,0,-49.129	.:.:.:.:.:.:.:.	0/1:111:56,54:56:1992:54:1940:-141.55,0,-146.229	0/0:16:15,0:15:527:0:0:0,-4.51545,-47.401	0/1:94:56,38:56:1991:38:1352:-93.682,0,-151.166	0/1:51:24,27:24:855:27:956:-71.0032,0,-61.9185	0/0:55:55,0:55:1935:0:0:0,-16.5566,-174.267	0/0:110:109,0:109:3850:0:0:0,-32.8123,-346.338	0/1:90:51,39:51:1784:39:1400:-99.2065,0,-133.746	0/0:80:77,3:77:2711:3:108:0,-14.0072,-234.161	0/0:128:128,0:128:4557:0:0:0,-38.5318,-410.299	0/1:73:42,31:42:1482:31:1103:-77.6046,0,-111.698	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.401	0/1:5:1,4:1:28:4:144:-11.8085,0,-1.29458	0/0:76:76,0:76:2671:0:0:0,-22.8783,-240.637	0/1:43:20,23:20:692:23:806:-59.9139,0,-49.6549	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:115:61,54:61:2162:54:1916:-138.099,0,-160.228	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:29:29,0:29:1017:0:0:0,-8.72987,-91.8408	0/1:62:31,31:31:1091:31:1089:-79.6532,0,-79.8341	0/0:65:65,0:65:2306:0:0:0,-19.5669,-207.8	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/0:82:82,0:82:2913:0:0:0,-24.6845,-262.406	0/0:122:122,0:122:4295:0:0:0,-36.7257,-386.729	0/1:56:29,27:29:1004:27:955:-69.4072,0,-73.8106	0/1:40:26,14:26:919:14:491:-32.4799,0,-70.9849	0/0:167:167,0:167:5893:0:0:0,-50.272,-530.487	0/0:130:127,3:127:4417:3:108:0,-29.0587,-387.632	0/0:35:35,0:35:1220:0:0:0,-10.536,-110.101	0/0:72:72,0:72:2493:0:0:0,-21.6742,-224.618	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.367	0/1:24:10,14:10:335:14:504:-38.4734,0,-23.2495	0/0:120:120,0:120:4212:0:0:0,-36.1236,-379.262	0/1:152:77,74:77:2676:74:2622:-190.491,0,-195.347	0/0:122:122,0:122:4263:0:0:0,-36.7257,-383.851	0/0:114:113,1:113:3995:1:36:0,-30.7191,-356.145	0/1:18:3,15:3:108:15:540:-43.518,0,-4.65663	0/0:91:89,2:89:3132:2:68:0,-20.936,-275.613	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:95:93,0:93:3259:0:0:0,-27.9958,-293.173	0/0:79:79,0:79:2776:0:0:0,-23.7814,-250.081	0/0:266:265,0:265:9369:0:0:0,-79.7729,-842.828	0/1:53:36,17:36:1238:17:608:-39.0974,0,-95.7622	0/0:67:67,0:67:2345:0:0:0,-20.169,-211.308	0/1:35:23,12:23:813:12:424:-27.9604,0,-62.9545	0/1:107:54,53:54:1900:53:1875:-136.818,0,-139.064	0/1:13:4,8:4:144:8:288:-22.2952,0,-9.34143	0/0:62:62,0:62:2181:0:0:0,-18.6639,-196.555	0/0:63:61,0:61:2174:0:0:0,-18.3628,-195.567	0/1:27:12,15:12:432:15:527:-39.6324,0,-31.0934	0/1:44:31,13:31:1097:13:446:-27.2203,0,-85.7936	0/1:67:18,49:18:640:49:1756:-138.155,0,-37.7597	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3688	0/0:99:98,0:98:3462:0:0:0,-29.5009,-311.435
chr06	34821845	.	C	A	108136	PASS	AB=0.51055;ABP=5.8052;AC=139;AF=0.739362;AN=188;AO=5075;CIGAR=1X;DP=6518;DPB=6518;DPRA=16.9961;EPP=11023.2;EPPR=3132.1;GTI=2;LEN=1;MEANALT=1.02222;MQM=59.9848;MQMR=59.982;NS=94;NUMALT=1;ODDS=1.86264;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181698;QR=51371;RO=1441;RPL=5075;RPP=11023.2;RPPR=3132.1;RPR=0;RUN=1;SAF=0;SAP=11023.2;SAR=5075;SRF=0;SRP=3132.1;SRR=1441;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:40,10:40:1428:10:356:-17.3297,0,-113.766	0/1:75:45,30:45:1605:30:1080:-74.936,0,-122.161	0/1:103:56,47:56:1986:47:1692:-121.561,0,-148.004	1/1:179:0,179:0:0:179:6415:-577.437,-53.8844,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:77:2,75:2:72:75:2688:-235.328,-16.3426,0	0/1:83:37,46:37:1320:46:1629:-121.91,0,-94.1165	1/1:127:0,127:0:0:127:4548:-409.486,-38.2308,0	0/1:106:55,51:55:1946:51:1818:-131.992,0,-143.503	0/1:24:18,6:18:633:6:216:-12.5658,0,-50.0703	1/1:98:0,98:0:0:98:3495:-314.761,-29.5009,0	1/1:82:0,82:0:0:82:2952:-265.913,-24.6845,0	0/1:43:20,23:20:720:23:828:-61.8998,0,-52.1845	0/1:69:29,40:29:1029:40:1436:-108.767,0,-72.1501	1/1:55:0,55:0:0:55:1952:-175.953,-16.5567,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:117:54,63:54:1944:63:2248:-167.363,0,-140.015	1/1:168:0,168:0:0:168:5996:-539.748,-50.573,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:79:40,39:40:1410:39:1404:-102.878,0,-103.367	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:64:27,37:27:957:37:1328:-100.556,0,-67.1779	1/1:150:0,150:0:0:150:5353:-481.903,-45.1545,0	0/1:239:105,134:105:3772:134:4795:-359.759,0,-267.732	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/1:180:83,97:83:2938:97:3456:-257.069,0,-210.467	0/1:60:23,37:23:809:37:1324:-101.4,0,-55.0665	0/1:77:37,39:37:1328:39:1400:-103.205,0,-96.73	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:154:76,78:76:2706:78:2782:-203.634,0,-197.422	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.5126	0/0:1:1,0:1:21:0:0:0,-0.30103,-2.09995	0/1:111:55,56:55:1972:56:2012:-147.939,0,-144.34	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:92:36,56:36:1288:56:2008:-153.299,0,-88.5288	0/1:53:29,24:29:1040:24:860:-61.7672,0,-77.9598	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	1/1:105:0,105:0:0:105:3758:-338.42,-31.6082,0	0/1:88:39,49:39:1380:49:1756:-131.833,0,-98.0054	1/1:79:3,76:3:108:76:2732:-236.047,-13.7062,0	1/1:127:0,127:0:0:127:4556:-410.205,-38.2308,0	0/1:73:31,42:31:1112:42:1508:-114.039,0,-78.4162	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	0/1:41:21,20:21:752:20:716:-52.4255,0,-55.664	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:116:56,60:56:1978:60:2140:-157.949,0,-143.372	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:61:32,29:32:1129:29:1036:-75.1911,0,-83.5535	1/1:65:0,65:0:0:65:2335:-210.409,-19.567,0	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:120:0,120:0:0:120:4301:-387.265,-36.1236,0	0/1:56:27,29:27:972:29:1040:-77.0567,0,-70.9402	0/1:41:15,26:15:521:26:932:-71.8566,0,-34.8741	1/1:162:0,162:0:0:162:5792:-521.395,-48.7669,0	1/1:128:3,125:3:108:125:4492:-394.372,-28.4567,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:70:0,70:0:0:70:2494:-224.712,-21.0721,0	1/1:35:0,35:0:0:35:1252:-112.957,-10.5361,0	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	1/1:118:0,118:0:0:118:4221:-380.069,-35.5215,0	0/1:152:75,77:75:2647:77:2741:-201.175,0,-192.716	1/1:117:0,117:0:0:117:4177:-376.111,-35.2205,0	1/1:113:0,113:0:0:113:4036:-363.429,-34.0164,0	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	1/1:89:2,87:2:72:87:3116:-273.83,-19.9549,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:95:0,95:0:0:95:3389:-305.225,-28.5979,0	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	1/1:264:0,263:0:0:263:9432:-848.479,-79.1709,0	0/1:53:19,34:19:684:34:1220:-94.1522,0,-45.9357	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	0/1:35:13,22:13:468:22:792:-61.0696,0,-31.9236	0/1:106:52,54:52:1868:54:1936:-142.607,0,-136.49	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:63:0,63:0:0:63:2249:-202.671,-18.9649,0	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:45:14,31:14:500:31:1111:-86.755,0,-31.7898	0/1:68:50,18:50:1796:18:648:-38.1818,0,-141.452	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0
chr06	34845624	.	A	G	188000	PASS	AB=0.51497;ABP=12.7624;AC=144;AF=0.765957;AN=188;AO=8974;CIGAR=1X;DP=11435;DPB=11435;DPRA=0;EPP=19481.1;EPPR=5323.12;GTI=0;LEN=1;MEANALT=1.10638;MQM=54.027;MQMR=59.611;NS=94;NUMALT=1;ODDS=3.41119;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317852;QR=86953;RO=2450;RPL=1;RPP=19481.1;RPPR=5323.12;RPR=8973;RUN=1;SAF=0;SAP=19489.8;SAR=8974;SRF=0;SRP=5323.12;SRR=2450;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:14,12:14:504:12:428:-30.9327,0,-37.8372	0/1:184:76,108:76:2703:108:3829:-287.56,0,-188.068	0/1:215:114,101:114:4062:101:3586:-256.285,0,-300.639	1/1:301:0,301:0:0:301:10645:-956.365,-90.61,0	1/1:91:3,88:3:104:88:3135:-271.436,-17.6909,0	1/1:51:0,51:0:0:51:1785:-160.486,-15.3525,0	1/1:163:0,163:0:0:163:5777:-518.469,-49.0679,0	0/1:181:89,92:89:3175:92:3279:-237.281,0,-231.46	1/1:74:0,74:0:0:74:2617:-235.045,-22.2762,0	0/1:88:52,36:52:1856:36:1278:-88.626,0,-140.796	0/1:38:19,19:19:648:19:676:-49.602,0,-47.1801	1/1:47:0,47:0:0:47:1679:-150.624,-14.1484,0	1/1:48:0,48:0:0:48:1695:-152.344,-14.4494,0	0/1:76:41,35:41:1449:35:1228:-87.6667,0,-107.826	0/1:52:28,24:28:991:24:864:-62.0592,0,-73.8476	1/1:37:0,37:0:0:37:1294:-116.344,-11.1381,0	1/1:56:0,56:0:0:56:1999:-179.661,-16.8577,0	1/1:45:0,45:0:0:45:1592:-142.563,-13.5464,0	0/1:20:7,13:7:240:13:456:-34.9313,0,-15.9141	0/1:409:207,202:207:7304:202:7143:-518.503,0,-534.272	1/1:127:1,126:1:32:126:4397:-391.752,-35.064,0	1/1:194:0,192:0:0:192:6838:-614.167,-57.7978,0	0/1:102:54,48:54:1936:48:1685:-120.759,0,-143.802	1/1:121:0,121:0:0:121:4297:-385.547,-36.4246,0	0/1:90:50,40:50:1792:40:1410:-99.889,0,-134.459	1/1:285:0,285:0:0:285:10121:-908.88,-85.7936,0	0/1:252:127,125:127:4481:125:4446:-323.42,0,-327.379	0/1:25:17,8:17:599:8:275:-17.5259,0,-46.7123	0/1:455:186,269:186:6622:269:9502:-717.12,0,-458.622	0/1:186:90,96:90:3191:96:3398:-248.706,0,-231.394	0/1:178:86,92:86:3054:92:3308:-243.638,0,-221.305	1/1:16:0,16:0:0:16:559:-50.5128,-4.81648,0	1/1:24:0,24:0:0:24:851:-76.8055,-7.22472,0	1/1:10:0,10:0:0:10:326:-29.5914,-3.0103,0	1/1:7:0,7:0:0:7:252:-22.9711,-2.10721,0	1/1:33:0,33:0:0:33:1171:-104.934,-9.93399,0	0/1:156:78,78:78:2783:78:2776:-202.868,0,-203.748	1/1:326:2,324:2:72:324:11539:-1028.14,-91.2991,0	0/1:35:20,14:20:695:14:491:-33.021,0,-52.2707	0/1:7:3,4:3:108:4:144:-11.1875,0,-7.96796	0/1:218:99,119:99:3526:119:4201:-310.661,0,-251.89	1/1:45:0,45:0:0:45:1571:-141.475,-13.5464,0	0/1:196:106,89:106:3755:89:3079:-217.262,0,-279.063	0/1:41:20,21:20:716:21:752:-55.6161,0,-52.4246	1/1:43:0,43:0:0:43:1507:-135.811,-12.9443,0	1/1:118:1,117:1:36:117:4165:-371.063,-31.9233,0	0/1:212:105,107:105:3744:107:3818:-278.332,0,-273.279	1/1:279:4,274:4:144:274:9705:-857.764,-70.7323,0	1/1:159:0,159:0:0:159:5637:-505.56,-47.8638,0	0/1:215:102,113:102:3615:113:4048:-299.109,0,-260.826	1/1:252:0,251:0:0:251:8909:-800.329,-75.5585,0	0/1:18:8,10:8:288:10:351:-26.4866,0,-20.8489	1/1:229:0,229:0:0:229:8120:-728.074,-68.9359,0	0/1:64:33,31:33:1166:31:1112:-81.0248,0,-85.9755	0/1:18:5,13:5:180:13:453:-35.4181,0,-11.1335	0/1:209:101,107:101:3603:107:3765:-275.022,0,-261.406	1/1:47:0,47:0:0:47:1672:-150.293,-14.1484,0	0/1:16:9,7:9:324:7:252:-18.1745,0,-24.6894	1/1:18:0,18:0:0:18:648:-58.517,-5.41854,0	0/1:100:32,68:32:1144:68:2406:-186.023,0,-73.0912	1/1:81:0,81:0:0:81:2864:-257.518,-24.3834,0	0/1:13:6,7:6:212:7:252:-19.099,0,-15.5089	1/1:287:0,286:0:0:286:10118:-908.043,-86.0946,0	1/1:281:2,279:2:72:279:9921:-883.737,-77.7527,0	0/1:89:47,42:47:1671:42:1487:-106.671,0,-123.835	0/1:151:75,76:75:2641:76:2695:-197.15,0,-192.48	1/1:208:8,200:8:284:200:7063:-608.041,-36.7109,0	1/1:170:1,169:1:36:169:6000:-535.734,-47.5768,0	1/1:29:0,29:0:0:29:1023:-92.1111,-8.72987,0	1/1:86:0,86:0:0:86:3055:-272.491,-25.8886,0	1/1:61:0,61:0:0:61:2166:-194.404,-18.3628,0	0/1:29:11,18:11:387:18:640:-49.0174,0,-26.4361	1/1:161:0,161:0:0:161:5677:-507.164,-48.4658,0	0/1:83:42,41:42:1492:41:1441:-104.551,0,-109.568	1/1:217:0,216:0:0:216:7609:-683,-65.0225,0	1/1:284:0,284:0:0:284:10108:-907.484,-85.4925,0	0/1:145:67,78:67:2361:78:2730:-201.399,0,-169.09	1/1:194:0,194:0:0:194:6897:-617.224,-58.3998,0	1/1:19:0,19:0:0:19:665:-59.8324,-5.71957,0	1/1:177:0,176:0:0:176:6240:-559.555,-52.9813,0	1/1:222:0,222:0:0:222:7790:-697.731,-66.8287,0	1/1:289:1,288:1:36:288:10194:-911.799,-83.4309,0	0/1:87:36,51:36:1288:51:1796:-135.308,0,-90.0316	1/1:55:0,55:0:0:55:1959:-176.42,-16.5567,0	0/1:63:32,31:32:1139:31:1078:-78.1348,0,-83.7189	0/1:81:39,42:39:1379:42:1489:-109.485,0,-100.02	0/1:32:16,16:16:576:16:568:-41.5092,0,-42.542	1/1:64:0,64:0:0:64:2257:-201.818,-19.2659,0	1/1:38:0,38:0:0:38:1364:-122.372,-11.4391,0	0/1:41:14,27:14:491:27:956:-73.6758,0,-32.1696	0/1:62:31,31:31:1086:31:1112:-81.1997,0,-79.3617	0/1:52:33,19:33:1160:19:671:-45.0165,0,-89.0531	1/1:169:0,168:0:0:168:5953:-534.334,-50.573,0	1/1:87:0,87:0:0:87:3072:-276.26,-26.1896,0
chr06	34897750	.	T	A	30360.9	PASS	AB=0.497645;ABP=3.18419;AC=44;AF=0.234043;AN=188;AO=1806;CIGAR=1X;DP=7979;DPB=7979;DPRA=1.02285;EPP=3916.01;EPPR=13150.3;GTI=1;LEN=1;MEANALT=1.02;MQM=59.9856;MQMR=59.9917;NS=94;NUMALT=1;ODDS=2.77227;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64690;QR=216505;RO=6170;RPL=1805;RPP=3916.01;RPPR=13150.3;RPR=1;RUN=1;SAF=0;SAP=3924.69;SAR=1806;SRF=0;SRP=13401;SRR=6170;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:23,12:23:816:12:428:-28.3228,0,-63.2257	0/1:67:34,33:34:1205:33:1184:-86.6993,0,-88.5849	0/1:71:29,42:29:1025:42:1492:-113.201,0,-71.1876	0/0:156:156,0:156:5546:0:0:0,-46.9607,-499.265	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/0:57:57,0:57:1995:0:0:0,-17.1587,-179.819	0/0:116:116,0:116:4075:0:0:0,-34.9195,-366.939	0/1:132:63,69:63:2252:69:2457:-181.647,0,-163.207	0/0:102:102,0:102:3626:0:0:0,-30.7051,-326.544	0/1:117:49,68:49:1729:68:2444:-184.994,0,-120.672	0/1:78:35,43:35:1233:43:1529:-114.421,0,-87.7918	0/0:93:93,0:93:3298:0:0:0,-27.9958,-297.038	0/0:69:68,1:68:2424:1:36:0,-17.1728,-214.818	0/1:85:46,39:46:1618:39:1392:-99.9915,0,-120.317	0/1:66:36,30:36:1277:30:1080:-77.6453,0,-95.3631	0/0:58:58,0:58:2060:0:0:0,-17.4597,-185.672	0/0:79:78,0:78:2743:0:0:0,-23.4803,-246.75	0/0:63:63,0:63:2211:0:0:0,-18.9649,-199.25	0/1:35:16,19:16:534:19:680:-50.9931,0,-37.8385	0/1:135:68,67:68:2187:67:2393:-174.986,0,-156.435	0/0:128:128,0:128:4493:0:0:0,-38.5318,-404.539	0/0:91:91,0:91:3157:0:0:0,-27.3937,-284.353	0/1:58:36,22:36:1265:22:784:-53.4242,0,-96.6908	0/0:132:132,0:132:4717:0:0:0,-39.736,-424.688	0/1:82:49,33:49:1654:33:1188:-82.5441,0,-124.451	0/0:244:244,0:244:8659:0:0:0,-73.4513,-779.309	0/1:253:134,119:134:4419:119:4256:-307.055,0,-321.72	0/1:34:14,20:14:473:20:716:-54.5327,0,-32.6562	0/1:221:113,108:113:4015:108:3884:-283.225,0,-295.008	0/1:109:51,58:51:1797:58:2080:-154.658,0,-129.068	0/1:79:48,31:48:1697:31:1116:-76.9703,0,-129.233	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/1:237:113,124:113:4029:124:4456:-329.864,0,-291.454	0/0:148:148,0:148:4990:0:0:0,-44.5524,-449.202	0/1:80:49,31:49:1631:31:1112:-76.3089,0,-122.981	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:122:73,49:73:2620:49:1760:-121.958,0,-199.322	0/0:26:26,0:26:905:0:0:0,-7.82678,-81.7628	0/1:102:49,53:49:1729:53:1900:-140.573,0,-125.188	0/1:109:41,68:41:1472:68:2448:-187.762,0,-99.9639	0/0:83:83,0:83:2923:0:0:0,-24.9855,-263.302	0/0:96:96,0:96:3421:0:0:0,-28.8989,-308.103	0/1:90:37,53:37:1249:53:1896:-143.825,0,-85.6067	0/0:124:122,2:122:4204:2:72:0,-30.491,-371.706	0/0:111:111,0:111:3908:0:0:0,-33.4143,-351.912	0/1:75:43,32:43:1517:32:1152:-81.4129,0,-114.244	0/0:93:92,1:92:3239:1:36:0,-24.3975,-288.132	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:100:100,0:100:3437:0:0:0,-30.103,-309.538	0/1:27:4,23:4:144:23:828:-66.7163,0,-5.18581	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:113:60,53:60:2103:53:1889:-136.27,0,-155.518	0/0:69:69,0:69:2374:0:0:0,-20.7711,-213.91	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:65:30,35:30:1072:35:1252:-93.3611,0,-77.2255	0/0:117:113,2:113:4036:2:72:0,-28.1416,-356.592	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:199:199,0:199:7017:0:0:0,-59.905,-631.598	0/0:184:183,1:183:6471:1:36:0,-51.7912,-578.882	0/1:58:37,21:37:1278:21:756:-50.9075,0,-97.8567	0/1:79:51,28:51:1813:28:1008:-67.255,0,-139.668	0/0:121:121,0:121:4244:0:0:0,-36.4246,-382.141	0/0:70:70,0:70:2440:0:0:0,-21.0721,-219.85	0/0:17:16,1:16:557:1:36:0,-1.51923,-46.8573	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.526	0/0:88:88,0:88:3094:0:0:0,-26.4906,-278.685	0/1:25:11,14:11:373:14:504:-38.1723,0,-26.3695	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.701	0/1:47:33,14:33:1180:14:504:-31.5497,0,-92.3596	0/0:150:150,0:150:5345:0:0:0,-45.1545,-481.184	0/0:81:81,0:81:2877:0:0:0,-24.3834,-259.166	0/1:80:33,47:33:1168:47:1688:-128.125,0,-81.3448	0/0:100:100,0:100:3530:0:0:0,-30.103,-317.91	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:75:74,1:74:2524:1:36:0,-18.979,-223.804	0/0:88:88,0:88:3034:0:0:0,-26.4906,-273.287	0/0:173:173,0:173:6055:0:0:0,-52.0782,-545.058	0/1:93:48,45:48:1720:45:1616:-117.734,0,-127.09	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:113:58,55:58:2034:55:1953:-142.027,0,-149.313	0/1:153:79,74:79:2836:74:2644:-192.149,0,-209.42	0/1:45:20,25:20:708:25:896:-67.414,0,-50.4979	0/0:92:92,0:92:3129:0:0:0,-27.6948,-281.832	0/0:69:69,0:69:2453:0:0:0,-20.7711,-221.023	0/1:46:16,30:16:549:30:1061:-81.952,0,-35.8851	0/1:95:53,42:53:1877:42:1500:-106.697,0,-140.609	0/1:80:25,55:25:881:55:1972:-153.672,0,-55.5235	0/0:98:98,0:98:3421:0:0:0,-29.5009,-308.102	0/0:111:111,0:111:3878:0:0:0,-33.4143,-349.212
chr06	34898608	.	A	C	71749.5	PASS	AB=0.495383;ABP=3.35118;AC=145;AF=0.77957;AN=186;AO=3387;CIGAR=1X;DP=4370;DPB=4370;DPRA=47.4891;EPP=7349.1;EPPR=26.1578;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.3174;MQMR=59.9518;NS=93;NUMALT=1;ODDS=0.455866;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121025;QR=34873;RO=976;RPL=0;RPP=7357.79;RPPR=2122.37;RPR=3387;RUN=1;SAF=3386;SAP=7349.1;SAR=1;SRF=437;SRP=26.1578;SRR=539;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:8,13:8:284:13:468:-36.138,0,-19.5817	0/1:38:12,26:12:432:26:932:-72.7564,0,-27.7821	0/1:54:24,30:24:855:30:1065:-79.875,0,-60.9281	1/1:113:0,113:0:0:113:4027:-362.588,-34.0164,0	1/1:31:0,31:0:0:31:1112:-100.083,-9.33193,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:18:0,18:0:0:18:640:-57.9155,-5.41854,0	0/1:67:15,52:15:536:52:1864:-147.829,0,-28.4054	1/1:30:0,30:0:0:30:1076:-97.1447,-9.0309,0	0/1:22:9,13:9:320:13:468:-35.837,0,-22.5197	0/1:47:34,12:34:1220:12:428:-24.638,0,-95.8996	1/1:59:0,59:0:0:59:2116:-190.692,-17.7608,0	1/1:46:0,46:0:0:46:1643:-147.913,-13.8474,0	0/1:52:40,12:40:1432:12:432:-23.5569,0,-113.524	0/1:61:39,22:39:1392:22:788:-52.6539,0,-107.216	1/1:35:0,35:0:0:35:1256:-113.305,-10.5361,0	1/1:18:0,18:0:0:18:639:-57.8002,-5.41854,0	1/1:15:1,14:1:36:14:500:-41.7379,-0.917175,0	0/0:36:33,3:33:1168:3:108:0,-0.76191,-95.352	0/1:64:15,48:15:540:48:1715:-135.183,0,-29.6118	1/1:63:0,63:0:0:63:2248:-202.538,-18.9649,0	1/1:81:0,81:0:0:81:2900:-261.026,-24.3834,0	0/1:49:17,32:17:612:32:1127:-86.9732,0,-40.6568	1/1:27:0,27:0:0:27:960:-86.6868,-8.12781,0	0/1:27:7,20:7:252:20:712:-56.2742,0,-14.9011	1/1:122:1,121:1:36:121:4312:-384.554,-33.1274,0	0/1:79:24,54:24:860:54:1944:-151.351,0,-53.8817	0/1:36:31,5:31:1104:5:180:-5.71341,0,-88.7877	0/1:75:13,62:13:468:62:2218:-177.012,0,-19.8824	1/1:37:3,33:3:108:33:1176:-96.0727,-1.12174,0	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:15:0,15:0:0:15:540:-48.9243,-4.51545,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:147:92,55:92:3295:55:1980:-134.188,0,-252.517	1/1:71:0,71:0:0:71:2548:-229.486,-21.3731,0	0/1:59:49,10:49:1730:10:360:-14.9835,0,-138.223	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:51:18,33:18:644:33:1188:-91.8761,0,-42.9381	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:68:22,46:22:779:46:1643:-127.675,0,-49.962	0/1:61:48,13:48:1720:13:464:-23.7347,0,-136.723	1/1:24:0,23:0:0:23:793:-71.3127,-6.92369,0	1/1:56:0,56:0:0:56:2000:-179.904,-16.8577,0	0/1:57:19,38:19:680:38:1341:-103.816,0,-44.3705	1/1:63:0,63:0:0:63:2254:-203.08,-18.9649,0	1/1:65:1,64:1:36:64:2286:-202.356,-15.9687,0	0/1:30:11,19:11:396:19:680:-52.4983,0,-26.9518	1/1:75:0,75:0:0:75:2680:-240.956,-22.5773,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:88:0,88:0:0:88:3160:-284.592,-26.4906,0	1/1:13:0,13:0:0:13:468:-42.4489,-3.91339,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:61:21,40:21:748:40:1427:-110.125,0,-49.2825	1/1:23:0,21:0:0:21:748:-67.2858,-6.32163,0	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.4881,-2.70927,0	0/1:30:8,22:8:284:22:788:-62.2032,0,-16.8725	1/1:47:1,46:1:36:46:1638:-144.073,-10.5501,0	.:.:.:.:.:.:.:.	1/1:83:0,83:0:0:83:2958:-266.136,-24.9855,0	1/1:99:0,99:0:0:99:3532:-318.063,-29.802,0	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	1/1:41:2,39:2:72:39:1393:-118.83,-5.50551,0	1/1:80:4,76:4:144:76:2728:-232.4,-10.7688,0	1/1:69:0,69:0:0:69:2484:-223.747,-20.7711,0	0/1:17:2,15:2:72:15:536:-43.4502,0,-1.71921	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:51:1,50:1:36:50:1779:-156.759,-11.7543,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:88:0,88:0:0:88:3164:-283.822,-26.4906,0	0/1:32:11,21:11:396:21:756:-58.7179,0,-26.3498	1/1:44:0,44:0:0:44:1571:-141.627,-13.2453,0	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	0/1:48:12,36:12:432:36:1287:-101.658,0,-24.7708	1/1:46:1,45:1:36:45:1600:-140.506,-10.2491,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:48:0,48:0:0:48:1708:-153.967,-14.4494,0	1/1:64:0,64:0:0:64:2270:-201.8,-19.2659,0	1/1:130:0,130:0:0:130:4650:-418.382,-39.1339,0	0/1:63:38,25:38:1356:25:892:-61.5861,0,-103.376	1/1:47:0,47:0:0:47:1680:-151.46,-14.1484,0	0/1:50:42,8:42:1500:8:284:-10.8519,0,-120.243	0/1:120:89,31:89:3179:31:1101:-63.2656,0,-250.21	0/1:35:19,16:19:680:16:559:-40.1016,0,-50.9931	1/1:30:0,30:0:0:30:1076:-97.1271,-9.0309,0	1/1:38:0,38:0:0:38:1364:-123.044,-11.4391,0	0/1:37:28,9:28:996:9:324:-18.357,0,-78.8168	0/1:71:41,30:41:1455:30:1076:-75.7675,0,-109.872	0/1:52:42,10:42:1508:10:339:-15.1701,0,-120.361	1/1:70:0,70:0:0:70:2474:-222.89,-21.0721,0	1/1:56:0,56:0:0:56:2000:-180.231,-16.8577,0
chr06	34898640	.	A	G	70637.2	PASS	AB=0.492834;ABP=3.81951;AC=145;AF=0.77957;AN=186;AO=3339;CIGAR=1X;DP=4307;DPB=4307;DPRA=46.8043;EPP=7236.2;EPPR=32.224;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.3558;MQMR=59.9917;NS=93;NUMALT=1;ODDS=1.91849;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119024;QR=34505;RO=966;RPL=3339;RPP=7253.56;RPPR=2100.65;RPR=0;RUN=1;SAF=3337;SAP=7236.2;SAR=2;SRF=426;SRP=32.224;SRR=540;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/1:39:12,27:12:432:27:968:-75.689,0,-27.481	0/1:51:23,28:23:794:28:992:-74.2174,0,-56.4208	1/1:110:0,110:0:0:110:3917:-352.695,-33.1133,0	1/1:28:0,28:0:0:28:1000:-90.1204,-8.42884,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:18:0,18:0:0:18:639:-57.8245,-5.41854,0	0/1:68:16,52:16:572:52:1856:-146.807,0,-31.343	1/1:29:0,29:0:0:29:1025:-92.5525,-8.72987,0	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	0/1:47:36,11:36:1283:11:395:-21.7327,0,-101.624	1/1:57:0,57:0:0:57:2028:-182.776,-17.1587,0	1/1:46:0,46:0:0:46:1627:-146.48,-13.8474,0	0/1:51:40,11:40:1440:11:387:-19.8027,0,-114.545	0/1:58:38,20:38:1364:20:702:-46.0304,0,-105.601	1/1:36:0,36:0:0:36:1283:-115.722,-10.8371,0	1/1:18:0,18:0:0:18:639:-57.6393,-5.41854,0	1/1:15:1,14:1:36:14:496:-41.376,-0.917175,0	0/0:36:33,3:33:1180:3:108:0,-0.76191,-96.4329	0/1:65:16,49:16:568:49:1752:-138.262,0,-31.8849	1/1:62:0,62:0:0:62:2203:-198.488,-18.6639,0	1/1:78:0,78:0:0:78:2787:-251.038,-23.4803,0	0/1:46:16,30:16:576:30:1072:-82.9313,0,-38.3214	1/1:27:0,27:0:0:27:949:-85.7039,-8.12781,0	0/1:27:8,19:8:284:19:680:-53.4014,0,-17.7755	1/1:121:0,121:0:0:121:4327:-389.497,-36.4246,0	0/1:78:25,53:25:892:53:1892:-147.033,0,-57.1193	0/1:34:29,5:29:1040:5:180:-6.31547,0,-83.6793	0/1:73:13,60:13:468:60:2150:-171.385,0,-20.4845	1/1:37:3,34:3:108:34:1207:-98.8601,-1.06294,0	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:16:0,16:0:0:16:576:-52.1521,-4.81648,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:148:93,55:93:3328:55:1975:-133.441,0,-255.186	1/1:71:0,71:0:0:71:2548:-229.486,-21.3731,0	0/1:58:48,10:48:1713:10:352:-14.5585,0,-136.994	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:52:18,34:18:640:34:1220:-94.4426,0,-42.2758	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:68:22,46:22:783:46:1648:-128.116,0,-50.3229	0/1:60:47,13:47:1673:13:452:-22.9493,0,-132.793	1/1:22:0,22:0:0:22:762:-68.8962,-6.62266,0	1/1:56:0,56:0:0:56:2004:-180.271,-16.8577,0	0/1:56:19,37:19:684:37:1328:-102.946,0,-45.0326	1/1:62:0,62:0:0:62:2220:-200.024,-18.6639,0	1/1:65:1,64:1:36:64:2288:-202.54,-15.9687,0	0/1:27:10,17:10:356:17:612:-47.2856,0,-24.2534	1/1:73:0,73:0:0:73:2600:-233.809,-21.9752,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:88:0,88:0:0:88:3149:-283.602,-26.4906,0	1/1:13:0,13:0:0:13:456:-41.3689,-3.91339,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:61:21,40:21:756:40:1428:-110.216,0,-50.0044	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:315:-28.6695,-2.70927,0	0/1:31:9,22:9:324:22:792:-62.2631,0,-20.1739	1/1:45:1,44:1:36:44:1576:-138.498,-9.94808,0	.:.:.:.:.:.:.:.	1/1:79:0,79:0:0:79:2817:-253.467,-23.7814,0	1/1:97:0,97:0:0:97:3459:-311.499,-29.1999,0	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	1/1:38:1,37:1:36:37:1324:-115.853,-7.84087,0	1/1:78:2,76:2:72:76:2731:-239.141,-16.6436,0	1/1:67:0,67:0:0:67:2387:-215.022,-20.169,0	1/1:16:1,15:1:36:15:532:-44.6077,-1.21821,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:51:1,50:1:36:50:1784:-157.209,-11.7543,0	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	1/1:87:0,87:0:0:87:3098:-277.899,-26.1896,0	0/1:33:12,21:12:417:21:729:-55.9832,0,-27.9262	1/1:44:0,44:0:0:44:1560:-140.63,-13.2453,0	1/1:76:0,76:0:0:76:2704:-243.605,-22.8783,0	0/1:46:11,35:11:396:35:1256:-99.4897,0,-22.1354	1/1:46:1,45:1:36:45:1583:-139.047,-10.2491,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:47:0,47:0:0:47:1663:-149.919,-14.1484,0	1/1:64:1,63:1:36:63:2248:-196.223,-15.6676,0	1/1:128:0,128:0:0:128:4547:-409.144,-38.5318,0	0/1:63:38,25:38:1349:25:888:-61.231,0,-102.743	1/1:47:0,47:0:0:47:1651:-148.861,-14.1484,0	0/1:49:42,7:42:1508:7:252:-8.27849,0,-121.264	0/1:116:85,31:85:3032:31:1093:-63.744,0,-238.189	0/1:33:17,15:17:604:15:536:-38.5822,0,-44.6981	1/1:29:0,29:0:0:29:1027:-92.7164,-8.72987,0	1/1:38:0,38:0:0:38:1364:-123.044,-11.4391,0	0/1:37:28,9:28:1000:9:320:-17.9935,0,-79.1773	0/1:71:41,30:41:1461:30:1071:-75.3163,0,-110.411	0/1:53:42,11:42:1500:11:396:-20.0143,0,-119.34	1/1:69:0,68:0:0:68:2423:-217.95,-20.47,0	1/1:54:0,54:0:0:54:1915:-172.584,-16.2556,0
chr06	34898654	.	G	A	61083.6	PASS	AB=0.387263;ABP=259.565;AC=141;AF=0.766304;AN=184;AO=3041;CIGAR=1X;DP=4477;DPB=4477;DPRA=0;EPP=6606.46;EPPR=811.617;GTI=5;LEN=1;MEANALT=1.01087;MQM=59.3782;MQMR=56.8014;NS=92;NUMALT=1;ODDS=0.253539;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107420;QR=51364;RO=1435;RPL=3041;RPP=6606.46;RPPR=202.406;RPR=0;RUN=1;SAF=3041;SAP=6606.46;SAR=0;SRF=888;SRP=178.969;SRR=547;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/1:28:6,22:6:216:22:788:-62.8078,0,-11.3617	0/1:39:13,26:13:468:26:920:-71.3491,0,-30.6327	1/1:104:0,104:0:0:104:3715:-334.5,-31.3071,0	1/1:27:0,27:0:0:27:968:-87.3235,-8.12781,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:18:0,18:0:0:18:626:-56.6616,-5.41854,0	0/1:52:5,47:5:180:47:1676:-135.428,0,-0.898505	1/1:27:0,27:0:0:27:951:-85.8961,-8.12781,0	0/1:40:27,13:27:968:13:459:-29.6029,0,-75.0203	0/1:64:54,10:54:1936:10:348:-12.3836,0,-154.983	1/1:55:1,54:1:36:54:1924:-169.822,-12.9584,0	1/1:43:0,43:0:0:43:1519:-136.879,-12.9443,0	0/1:48:37,11:37:1332:11:383:-20.3431,0,-105.733	0/1:82:64,18:64:2292:18:639:-32.9255,0,-181.489	1/1:34:0,34:0:0:34:1196:-107.901,-10.235,0	1/1:14:0,14:0:0:14:496:-44.9661,-4.21442,0	1/1:12:1,11:1:36:11:381:-31.0224,-0.0140851,0	0/1:37:33,4:33:1172:4:140:-1.8063,0,-94.6494	0/1:116:72,44:72:2576:44:1548:-104.562,0,-196.006	1/1:57:0,57:0:0:57:2013:-181.398,-17.1587,0	1/1:74:0,74:0:0:74:2596:-233.843,-22.2762,0	0/1:80:52,28:52:1864:28:992:-65.4982,0,-143.267	1/1:25:0,25:0:0:25:896:-80.9332,-7.52575,0	0/1:22:7,15:7:252:15:514:-39.9612,0,-16.4063	1/1:104:1,103:1:36:103:3632:-323.389,-27.7088,0	0/1:73:24,49:24:852:49:1736:-134.505,0,-55.0252	0/1:35:30,5:30:1059:5:179:-5.92309,0,-85.0844	0/1:175:118,56:118:4232:56:1944:-122.316,0,-327.602	0/1:32:4,28:4:144:28:1004:-81.0429,0,-3.24162	0/1:54:40,14:40:1436:14:496:-28.7186,0,-113.015	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:13:0,13:0:0:13:464:-42.0868,-3.91339,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:203:-18.6012,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:201:148,53:148:5283:53:1879:-108.846,0,-414.774	1/1:64:1,63:1:36:63:2205:-195.08,-15.6676,0	0/1:56:46,10:46:1643:10:356:-15.5236,0,-131.3	.:.:.:.:.:.:.:.	0/1:47:18,29:18:640:29:1028:-78.674,0,-43.7809	1/1:15:0,15:0:0:15:524:-47.4896,-4.51545,0	0/1:56:21,35:21:752:35:1256:-96.476,0,-51.1486	0/1:70:57,13:57:2044:13:459:-20.572,0,-163.049	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:53:0,53:0:0:53:1896:-170.561,-15.9546,0	0/1:35:5,30:5:180:30:1039:-83.2709,0,-6.01601	1/1:57:0,57:0:0:57:2015:-181.582,-17.1587,0	1/1:56:1,55:1:36:55:1944:-171.58,-13.2594,0	0/1:45:30,15:30:1072:15:520:-33.5816,0,-82.6151	1/1:69:0,69:0:0:69:2439:-219.579,-20.7711,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:82:0,82:0:0:82:2884:-259.786,-24.6845,0	0/1:28:17,11:17:612:11:388:-26.8178,0,-46.906	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:57:20,37:20:720:37:1316:-101.345,0,-47.9701	1/1:19:0,19:0:0:19:660:-59.7233,-5.71957,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.38905	1/1:9:0,9:0:0:9:315:-28.6695,-2.70927,0	0/1:27:8,19:8:288:19:669:-52.4061,0,-18.1396	1/1:40:1,39:1:36:39:1383:-121.142,-8.44293,0	.:.:.:.:.:.:.:.	1/1:76:0,76:0:0:76:2682:-241.302,-22.8783,0	1/1:83:1,82:1:36:82:2885:-256.262,-21.3872,0	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/1:62:25,37:25:900:37:1328:-101.148,0,-62.412	1/1:70:3,67:3:108:67:2375:-203.895,-11.0079,0	1/1:63:0,63:0:0:63:2230:-200.906,-18.9649,0	0/1:16:2,14:2:72:14:496:-40.1578,0,-2.02024	1/1:18:0,18:0:0:18:631:-57.1157,-5.41854,0	1/1:48:1,47:1:36:47:1656:-145.705,-10.8512,0	0/1:17:7,10:7:252:10:348:-26.5376,0,-17.8468	1/1:83:0,83:0:0:83:2929:-263.793,-24.9855,0	0/1:28:9,19:9:324:19:664:-51.6442,0,-21.077	1/1:42:0,42:0:0:42:1499:-134.992,-12.6433,0	1/1:68:0,68:0:0:68:2403:-216.527,-20.47,0	0/1:38:6,32:6:216:32:1136:-91.1065,0,-8.35045	1/1:44:1,43:1:36:43:1528:-133.821,-9.64705,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:39:0,39:0:0:39:1367:-123.306,-11.7402,0	1/1:54:0,54:0:0:54:1906:-169.917,-16.2556,0	1/1:120:0,120:0:0:120:4192:-377.289,-36.1236,0	0/1:80:56,24:56:2012:24:852:-52.8711,0,-156.947	1/1:42:0,42:0:0:42:1484:-133.841,-12.6433,0	0/1:59:52,7:52:1854:7:252:-5.26819,0,-149.25	0/1:172:142,30:142:5080:30:1063:-44.1762,0,-404.606	0/1:28:17,11:17:608:11:384:-26.4658,0,-46.6232	1/1:26:0,26:0:0:26:912:-82.3959,-7.82678,0	1/1:36:0,36:0:0:36:1276:-115.127,-10.8371,0	0/1:36:28,8:28:1008:8:280:-14.7022,0,-80.1993	0/1:63:36,27:36:1269:27:964:-68.1061,0,-95.5459	0/1:79:70,9:70:2512:9:312:-4.62012,0,-201.869	1/1:61:0,61:0:0:61:2135:-192.416,-18.3628,0	1/1:51:0,51:0:0:51:1798:-162.059,-15.3525,0
chr06	34898858	.	C	T	9098.95	PASS	AB=0.428469;ABP=65.1411;AC=41;AF=0.222826;AN=184;AO=600;CIGAR=1X;DP=3755;DPB=3755;DPRA=0.765009;EPP=1279.97;EPPR=6597.92;GTI=3;LEN=1;MEANALT=1.04762;MQM=59.9983;MQMR=59.9756;NS=92;NUMALT=1;ODDS=1.81393;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21363;QR=112299;RO=3152;RPL=2;RPP=1288.58;RPPR=6597.92;RPR=598;RUN=1;SAF=599;SAP=1297.22;SAR=1;SRF=3152;SRP=6847.49;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:20,10:20:716:10:360:-23.7134,0,-55.7368	0/1:26:11,15:11:392:15:532:-40.3863,0,-27.7933	0/1:27:18,9:18:635:9:320:-21.0145,0,-49.3492	0/0:79:79,0:79:2798:0:0:0,-23.7814,-252.061	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.576	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:54:54,0:54:1918:0:0:0,-16.2556,-172.896	0/1:53:32,21:32:1144:21:720:-49.1612,0,-87.3149	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/1:52:36,16:36:1288:16:572:-36.1599,0,-100.57	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:31:14,17:14:504:17:612:-46.0815,0,-36.3662	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:68:40,28:40:1422:28:1004:-70.2058,0,-107.806	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:50:23,26:23:807:26:924:-68.3675,0,-57.8392	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:27:14,13:14:489:13:460:-33.6076,0,-36.2111	0/0:142:142,0:142:5059:0:0:0,-42.7463,-455.444	0/1:62:40,22:40:1427:22:783:-52.1287,0,-110.063	0/1:19:9,10:9:324:10:347:-25.844,0,-23.7863	0/1:98:51,47:51:1832:47:1680:-121.986,0,-135.66	0/1:38:24,14:24:864:14:497:-33.6252,0,-66.6434	0/1:36:25,11:25:875:11:396:-25.1457,0,-68.229	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:72:46,26:46:1652:26:932:-62.5247,0,-127.294	0/0:90:90,0:90:3202:0:0:0,-27.0927,-288.403	0/1:16:5,11:5:180:11:387:-30.3495,0,-11.7356	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:40:19,21:19:684:21:752:-55.9651,0,-49.8491	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:67:26,41:26:911:41:1460:-111.527,0,-62.136	0/1:26:17,9:17:612:9:324:-21.6791,0,-47.5867	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/1:37:18,19:18:640:19:675:-49.9388,0,-46.7912	0/0:98:98,0:98:3487:0:0:0,-29.5009,-313.415	0/0:71:69,1:69:2464:1:36:0,-17.8337,-218.416	0/1:28:20,8:20:716:8:288:-17.8386,0,-56.3389	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.902	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.92	0/1:16:13,3:13:459:3:108:-5.25869,0,-36.8276	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:23:13,10:13:464:10:356:-25.4576,0,-35.1738	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:27:15,12:15:524:12:432:-31.0934,0,-39.3618	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.546	0/0:112:112,0:112:4000:0:0:0,-33.7154,-360.191	0/1:30:24,6:24:864:6:216:-10.7596,0,-69.0517	0/1:22:7,15:7:243:15:536:-41.9522,0,-15.5848	0/0:66:66,0:66:2346:0:0:0,-19.868,-211.398	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.701	0/1:8:5,3:5:171:3:93:-6.26849,0,-13.3172	0/0:72:72,0:72:2546:0:0:0,-21.6742,-229.391	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/0:87:87,0:87:3082:0:0:0,-26.1896,-277.609	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/1:62:33,29:33:1172:29:1002:-71.8232,0,-87.1236	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:38:37,0:37:1312:0:0:0,-11.1381,-118.022	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/0:133:133,0:133:4710:0:0:0,-40.037,-424.061	0/1:70:45,25:45:1594:25:900:-60.2489,0,-122.677	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:20:15,5:15:536:5:180:-10.5315,0,-42.5542	0/1:56:26,30:26:928:30:1080:-80.6556,0,-66.7527	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:30:30,0:30:1062:0:0:0,-9.0309,-95.89	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/1:33:21,12:21:756:12:423:-28.4711,0,-58.4332	0/1:21:14,7:14:496:7:252:-16.7073,0,-38.6526	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605
chr06	34918794	.	T	C	24746	PASS	AB=0.447042;ABP=87.4182;AC=44;AF=0.236559;AN=186;AO=1559;CIGAR=1X;DP=8075;DPB=8075;DPRA=0.910185;EPP=3388.34;EPPR=14095.9;GTI=1;LEN=1;MEANALT=1.04255;MQM=60;MQMR=59.9756;NS=93;NUMALT=1;ODDS=3.29849;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55632;QR=233419;RO=6514;RPL=0;RPP=3388.34;RPPR=14095.9;RPR=1559;RUN=1;SAF=1559;SAP=3388.34;SAR=0;SRF=6514;SRP=14148;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:36,10:36:1273:10:356:-18.5339,0,-101.024	0/1:61:28,33:28:1008:33:1188:-88.8658,0,-72.6735	0/1:202:125,77:125:4476:77:2747:-186.664,0,-342.114	0/0:263:263,0:263:9437:0:0:0,-79.1709,-849.286	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.472	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:64:64,0:64:2275:0:0:0,-19.2659,-205.012	0/1:78:53,25:53:1896:25:892:-57.1193,0,-147.437	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/1:58:31,27:31:1097:27:968:-69.9776,0,-81.5783	0/1:75:44,31:44:1576:31:1112:-77.8141,0,-119.554	0/0:84:84,0:84:2986:0:0:0,-25.2865,-268.97	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:60:38,22:38:1360:22:792:-53.5439,0,-104.639	0/1:43:22,21:22:792:21:752:-55.062,0,-58.6614	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.762	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:31:17,14:17:603:14:500:-36.0042,0,-45.2676	0/1:145:78,67:78:2785:67:2380:-170.809,0,-207.24	0/0:138:138,0:138:4960:0:0:0,-41.5421,-446.547	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.592	0/1:68:45,23:45:1616:23:816:-53.2917,0,-125.26	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:81:58,23:58:2076:23:820:-49.7391,0,-162.727	0/0:273:273,0:273:9754:0:0:0,-82.1812,-877.807	0/1:222:126,96:126:4528:96:3425:-241.634,0,-340.857	0/1:43:23,20:23:824:20:707:-51.0103,0,-61.539	0/1:232:121,110:121:4356:110:3908:-282.017,0,-322.314	0/1:109:70,39:70:2485:39:1396:-93.1268,0,-191.09	0/1:49:26,23:26:928:23:828:-60.0936,0,-69.0878	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:190:94,96:94:3380:96:3443:-252.887,0,-247.219	0/0:152:151,1:151:5412:1:36:0,-42.1583,-483.611	0/1:75:34,41:34:1224:41:1468:-109.839,0,-87.8898	.:.:.:.:.:.:.:.	0/1:113:40,72:40:1432:72:2558:-196.396,0,-95.1025	0/0:57:57,0:57:2043:0:0:0,-17.1587,-184.141	0/1:148:94,54:94:3376:54:1905:-127.173,0,-259.502	0/1:38:18,20:18:644:20:720:-53.6896,0,-46.8515	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.127	0/0:113:113,0:113:4048:0:0:0,-34.0164,-364.507	0/1:96:59,37:59:2112:37:1307:-89.031,0,-161.448	0/0:168:168,0:168:6009:0:0:0,-50.573,-540.914	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/1:77:41,36:41:1472:36:1292:-93.4045,0,-109.597	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/0:134:134,0:134:4804:0:0:0,-40.338,-432.515	0/1:50:24,26:24:864:26:923:-68.3353,0,-63.0311	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/1:128:67,61:67:2396:61:2171:-157.124,0,-177.365	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:80:46,34:46:1637:34:1216:-85.6642,0,-123.534	0/0:124:124,0:124:4464:0:0:0,-37.3277,-401.927	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:197:197,0:197:7064:0:0:0,-59.3029,-635.819	0/0:181:181,0:181:6477:0:0:0,-54.4864,-582.237	0/1:57:34,23:34:1220:23:812:-56.2422,0,-92.4571	0/1:72:37,35:37:1332:35:1248:-90.9507,0,-98.5082	0/0:95:93,2:93:3329:2:72:0,-21.7611,-292.988	0/0:191:191,0:191:6853:0:0:0,-57.4967,-616.835	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.409	0/1:32:6,26:6:216:26:932:-74.5659,0,-10.1576	0/0:153:153,0:153:5492:0:0:0,-46.0576,-494.405	0/1:73:53,20:53:1893:20:720:-43.1536,0,-148.671	0/0:124:124,0:124:4431:0:0:0,-37.3277,-398.961	0/0:213:213,0:213:7651:0:0:0,-64.1194,-688.621	0/1:85:59,26:59:2120:26:925:-57.9791,0,-165.47	0/0:102:101,1:101:3636:1:36:0,-27.1068,-323.845	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:111:111,0:111:3992:0:0:0,-33.4143,-359.468	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.879	0/0:151:151,0:151:5415:0:0:0,-45.4555,-487.478	0/1:58:27,31:27:972:31:1108:-82.5713,0,-70.3382	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.695	0/1:43:20,23:20:720:23:824:-61.539,0,-52.1845	0/1:120:56,64:56:2004:64:2299:-171.047,0,-144.51	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/0:72:71,1:71:2539:1:36:0,-18.0759,-225.162	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:50:31,19:31:1116:19:671:-45.6643,0,-85.7002	0/1:153:79,74:79:2836:74:2640:-191.79,0,-209.42	0/1:68:29,39:29:1040:39:1391:-105.018,0,-73.4443	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144
chr06	34918810	.	TCTGA	TCTGG	136584	PASS	AB=0.539833;ABP=50.9295;AC=142;AF=0.763441;AN=186;AO=6364;CIGAR=4M1X;DP=8024;DPB=8024;DPRA=17.4326;EPP=13623.2;EPPR=3453.57;GTI=2;LEN=1;MEANALT=1.47826;MQM=59.9826;MQMR=60;NS=93;NUMALT=1;ODDS=4.93622;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226783;QR=55172;RO=1605;RPL=6341;RPP=13623.2;RPPR=3453.57;RPR=23;RUN=1;SAF=6364;SAP=13822.3;SAR=0;SRF=1605;SRP=3488.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:11,33:11:373:33:1179:-93.1719,0,-20.6508	0/1:63:35,28:35:1187:28:1004:-71.711,0,-88.1632	0/1:206:78,127:78:2679:127:4520:-345.047,0,-179.437	1/1:257:1,254:1:31:254:9092:-815.123,-73.9898,0	1/1:49:0,49:0:0:49:1742:-157.063,-14.7505,0	1/1:38:2,36:2:65:36:1283:-109.6,-5.26611,0	1/1:65:0,65:0:0:65:2318:-208.88,-19.567,0	0/1:76:25,51:25:841:51:1819:-141.112,0,-53.1204	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	0/1:58:28,29:28:962:29:1036:-76.0355,0,-69.3706	0/1:74:32,42:32:1090:42:1485:-111.666,0,-76.1259	1/1:83:0,83:0:0:83:2917:-262.764,-24.9855,0	1/1:59:1,58:1:36:58:2043:-180.541,-14.1625,0	0/1:59:22,37:22:773:37:1282:-97.9156,0,-52.1306	0/1:44:22,22:22:747:22:788:-57.9995,0,-54.2984	1/1:47:0,47:0:0:47:1668:-150.405,-14.1484,0	1/1:33:0,32:0:0:32:1107:-99.5668,-9.63296,0	1/1:27:0,27:0:0:27:945:-85.3622,-8.12781,0	0/1:32:13,18:13:456:18:640:-48.3419,0,-31.7844	0/1:146:69,76:69:2350:76:2732:-202.221,0,-167.863	1/1:135:0,134:0:0:134:4770:-429.206,-40.338,0	1/1:116:0,116:0:0:116:4133:-372.154,-34.9195,0	0/1:69:24,45:24:801:45:1616:-124.959,0,-51.6288	1/1:36:0,34:0:0:34:1224:-110.107,-10.235,0	0/1:78:23,55:23:800:55:1976:-154.634,0,-48.838	1/1:271:0,271:0:0:271:9664:-868.611,-81.5791,0	0/1:224:99,124:99:3374:124:4436:-331.922,0,-236.398	0/1:41:20,21:20:685:21:735:-54.1292,0,-49.6263	0/1:235:114,121:114:3929:121:4321:-318.323,0,-283.072	0/1:108:41,67:41:1439:67:2404:-184.105,0,-97.2937	0/1:51:25,26:25:871:26:932:-68.8463,0,-63.3542	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:19:0,18:0:0:18:648:-58.2921,-5.41854,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:32:0,31:0:0:31:1104:-99.3109,-9.33193,0	0/1:189:96,93:96:3310:93:3335:-243.472,0,-241.232	1/1:150:1,149:1:36:149:5324:-475.694,-41.5562,0	0/1:75:41,34:41:1450:34:1212:-86.8091,0,-108.219	.:.:.:.:.:.:.:.	0/1:116:78,38:78:2601:38:1364:-88.1412,0,-199.423	1/1:56:0,55:0:0:55:1934:-173.973,-16.5567,0	0/1:149:57,91:57:1955:91:3242:-247.157,0,-131.382	0/1:38:21,17:21:717:17:603:-43.1604,0,-53.4066	1/1:43:0,42:0:0:42:1492:-134.283,-12.6433,0	1/1:112:0,112:0:0:112:4004:-360.55,-33.7154,0	0/1:98:38,60:38:1282:60:2143:-163.636,0,-86.1753	1/1:168:0,168:0:0:168:5945:-535.162,-50.573,0	1/1:105:0,105:0:0:105:3729:-335.812,-31.6082,0	0/1:78:39,37:39:1358:37:1319:-95.8397,0,-99.3461	1/1:100:0,100:0:0:100:3578:-322.226,-30.103,0	0/1:11:4,7:4:143:7:252:-19.7176,0,-9.91011	1/1:134:0,130:0:0:130:4664:-419.566,-39.1339,0	0/1:51:27,24:27:943:24:856:-62.0086,0,-69.8317	0/1:16:12,4:12:415:4:144:-8.49714,0,-32.864	0/1:122:61,61:61:2100:61:2196:-161.179,0,-152.545	1/1:29:0,23:0:0:23:824:-74.1516,-6.92369,0	0/0:5:5,0:5:174:0:0:0,-1.50515,-16.0015	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:80:34,46:34:1174:46:1635:-123.355,0,-81.8803	1/1:125:0,123:0:0:123:4346:-390.955,-37.0267,0	0/1:7:5,2:5:171:2:72:-4.72951,0,-13.619	1/1:191:1,190:1:36:190:6799:-608.383,-53.8985,0	1/1:178:0,178:0:0:178:6362:-571.894,-53.5833,0	0/1:55:22,32:22:719:32:1148:-87.1629,0,-48.5481	0/1:72:36,36:36:1238:36:1296:-95.2698,0,-90.047	1/1:99:2,94:2:72:94:3363:-296.095,-22.39,0	1/1:189:0,189:0:0:189:6720:-604.877,-56.8947,0	1/1:40:0,38:0:0:38:1351:-121.568,-11.4391,0	1/1:67:0,66:0:0:66:2360:-212.417,-19.868,0	1/1:44:0,44:0:0:44:1575:-142.041,-13.2453,0	0/1:32:26,6:26:899:6:201:-8.78408,0,-71.5896	1/1:154:0,151:0:0:151:5402:-485.992,-45.4555,0	0/1:72:20,52:20:694:52:1864:-146.365,0,-41.1071	1/1:122:0,119:0:0:119:4206:-378.391,-35.8226,0	1/1:210:0,207:0:0:207:7337:-660.084,-62.3132,0	0/1:89:27,61:27:948:61:2196:-171.163,0,-58.8898	1/1:105:1,104:1:31:104:3695:-329.654,-28.5087,0	1/1:16:0,15:0:0:15:540:-48.5767,-4.51545,0	1/1:107:0,105:0:0:105:3768:-339.013,-31.6082,0	1/1:80:1,78:1:36:78:2773:-246.212,-20.5429,0	1/1:148:0,147:0:0:147:5268:-474.045,-44.2514,0	0/1:59:31,28:31:1076:28:1004:-72.9151,0,-79.3866	1/1:55:0,55:0:0:55:1955:-176.218,-16.5567,0	0/1:44:25,19:25:877:19:671:-47.4705,0,-66.0021	0/1:119:64,55:64:2207:55:1941:-139.142,0,-163.073	0/1:22:10,12:10:341:12:428:-32.2361,0,-24.3971	1/1:69:0,69:0:0:69:2453:-221.023,-20.7711,0	1/1:68:0,67:0:0:67:2364:-212.765,-20.169,0	0/1:48:18,30:18:619:30:1080:-83.0638,0,-41.5818	0/1:159:77,81:77:2677:81:2835:-207.464,0,-193.257	0/1:68:39,29:39:1348:29:1032:-72.7234,0,-101.147	1/1:110:1,108:1:36:108:3855:-343.548,-29.5738,0	1/1:85:0,85:0:0:85:3014:-271.489,-25.5876,0
chr06	34918954	.	A	C	133500	PASS	AB=0.530093;ABP=30.848;AC=143;AF=0.768817;AN=186;AO=6260;CIGAR=1X;DP=7936;DPB=7936;DPRA=0;EPP=13596.4;EPPR=3631.54;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9904;MQMR=60;NS=93;NUMALT=1;ODDS=6.40432;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223776;QR=59722;RO=1671;RPL=6260;RPP=13596.4;RPPR=3631.54;RPR=0;RUN=1;SAF=0;SAP=13596.4;SAR=6260;SRF=0;SRP=3631.54;SRR=1671;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:18,30:18:648:30:1053:-80.6291,0,-44.2024	0/1:134:60,74:60:2148:74:2652:-198.588,0,-153.249	0/1:81:35,46:35:1248:46:1656:-124.945,0,-88.2414	1/1:162:0,162:0:0:162:5778:-520.134,-48.7669,0	1/1:43:0,43:0:0:43:1531:-138.082,-12.9443,0	1/1:62:1,61:1:36:61:2184:-193.228,-15.0656,0	1/1:114:0,114:0:0:114:4062:-365.766,-34.3174,0	0/1:92:41,51:41:1453:51:1801:-134.676,0,-103.369	1/1:102:0,102:0:0:102:3649:-328.613,-30.7051,0	0/1:84:41,43:41:1476:43:1540:-113.607,0,-107.85	0/1:52:19,33:19:680:33:1175:-90.4034,0,-45.8756	1/1:68:2,66:2:72:66:2362:-206.002,-13.6333,0	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	0/1:65:36,29:36:1296:29:1044:-74.7079,0,-97.377	0/1:75:36,39:36:1292:39:1396:-103.362,0,-94.0065	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2127	0/1:138:52,86:52:1849:86:3084:-236.246,0,-125.146	1/1:91:0,91:0:0:91:3230:-290.92,-27.3937,0	1/1:214:0,214:0:0:214:7657:-689.164,-64.4204,0	0/1:85:44,41:44:1572:41:1476:-107.549,0,-116.184	1/1:146:0,146:0:0:146:5224:-470.298,-43.9504,0	0/1:79:35,44:35:1260:44:1572:-117.945,0,-89.9241	1/1:303:1,302:1:36:302:10809:-969.113,-87.6138,0	0/1:124:69,55:69:2484:55:1976:-140.787,0,-186.485	0/1:38:18,19:18:644:19:684:-50.3924,0,-46.7928	0/1:187:92,95:92:3280:95:3374:-247.582,0,-239.128	0/1:144:51,93:51:1824:93:3324:-256.029,0,-121.093	0/1:130:59,71:59:2100:71:2544:-190.077,0,-150.136	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:13:1,12:1:36:12:428:-35.2605,-0.315115,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	0/1:240:112,128:112:4008:128:4589:-340.926,0,-288.662	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:48:23,25:23:824:25:892:-66.1502,0,-60.0339	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:124:57,67:57:2044:67:2400:-178.929,0,-146.904	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:85:42,43:42:1484:43:1532:-112.586,0,-108.267	0/1:92:37,55:37:1328:55:1956:-148.618,0,-92.1275	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	1/1:91:1,89:1:36:89:3182:-283.078,-23.7793,0	0/1:106:53,53:53:1880:53:1904:-139.729,0,-137.57	1/1:111:0,111:0:0:111:3965:-356.671,-33.4143,0	1/1:131:0,131:0:0:131:4644:-418.122,-39.4349,0	0/1:128:41,87:41:1472:87:3105:-241.144,0,-94.2443	1/1:187:0,187:0:0:187:6675:-600.826,-56.2926,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:99:0,99:0:0:99:3517:-316.738,-29.802,0	0/1:47:13,34:13:460:34:1216:-95.5982,0,-27.587	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	0/1:71:35,36:35:1221:36:1284:-94.4903,0,-88.8183	1/1:82:0,82:0:0:82:2924:-263.396,-24.6845,0	0/1:10:6,4:6:208:4:144:-10.3033,0,-16.0488	1/1:16:0,16:0:0:16:560:-50.7263,-4.81648,0	0/1:50:28,22:28:1008:22:776:-55.1093,0,-75.9849	1/1:116:0,115:0:0:115:4119:-370.534,-34.6185,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:250:0,250:0:0:250:8945:-805.03,-75.2575,0	1/1:137:1,136:1:36:136:4884:-436.112,-37.6428,0	0/1:63:27,36:27:972:36:1296:-97.979,0,-68.833	0/1:54:31,23:31:1108:23:824:-58.2277,0,-83.7754	1/1:106:1,105:1:36:105:3723:-331.67,-28.3109,0	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0	0/1:15:2,13:2:72:13:468:-37.9442,0,-2.32127	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	1/1:90:0,90:0:0:90:3224:-290.382,-27.0927,0	0/1:68:38,30:38:1356:30:1080:-77.0432,0,-101.87	1/1:144:0,144:0:0:144:5110:-460.043,-43.3483,0	1/1:78:0,78:0:0:78:2784:-250.801,-23.4803,0	0/1:85:41,44:41:1464:44:1580:-116.904,0,-106.469	1/1:83:1,82:1:36:82:2912:-258.717,-21.3872,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:100:0,100:0:0:100:3600:-324.205,-30.103,0	1/1:71:0,71:0:0:71:2537:-228.579,-21.3731,0	1/1:119:0,119:0:0:119:4232:-381.061,-35.8226,0	0/1:124:66,57:66:2342:57:2031:-145.675,0,-173.65	1/1:53:0,53:0:0:53:1889:-170.286,-15.9546,0	0/1:110:56,54:56:2004:54:1944:-142.123,0,-147.52	0/1:148:80,68:80:2864:68:2440:-175.303,0,-213.445	0/1:62:27,35:27:972:35:1251:-94.2304,0,-69.134	1/1:102:0,102:0:0:102:3644:-328.165,-30.7051,0	1/1:64:0,64:0:0:64:2295:-206.81,-19.2659,0	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/1:78:42,36:42:1512:36:1284:-92.3831,0,-112.894	0/1:82:59,23:59:2101:23:809:-48.4438,0,-164.673	1/1:45:0,45:0:0:45:1614:-145.55,-13.5464,0	1/1:110:1,108:1:36:108:3876:-345.436,-29.5738,0
chr06	34918992	.	A	G	151802	PASS	AB=0.527503;ABP=26.8989;AC=144;AF=0.765957;AN=188;AO=6989;CIGAR=1X;DP=8713;DPB=8713;DPRA=0;EPP=14842.6;EPPR=3562.11;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.97;MQMR=59.9954;NS=94;NUMALT=1;ODDS=0.736905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=249393;QR=61695;RO=1722;RPL=39;RPP=14842.6;RPPR=3562.11;RPR=6950;RUN=1;SAF=6989;SAP=15179.4;SAR=0;SRF=1722;SRP=3742.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:36,31:36:1280:31:1108:-79.862,0,-95.3342	0/1:53:26,27:26:936:27:968:-71.4828,0,-68.6049	0/1:142:59,83:59:2101:83:2968:-224.606,0,-146.611	1/1:223:0,223:0:0:223:7950:-715.478,-67.1297,0	1/1:73:2,71:2:72:71:2518:-220.034,-15.1385,0	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	1/1:98:0,98:0:0:98:3474:-312.871,-29.5009,0	0/1:147:70,77:70:2508:77:2764:-204.75,0,-181.721	1/1:122:0,122:0:0:122:4320:-388.979,-36.7257,0	0/1:126:58,68:58:2080:68:2436:-181.566,0,-149.54	0/1:29:10,19:10:360:19:680:-52.7993,0,-24.0144	1/1:65:0,65:0:0:65:2311:-208.25,-19.567,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:30:11,19:11:396:19:684:-52.8594,0,-26.9518	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.937	1/1:39:0,39:0:0:39:1380:-124.499,-11.7402,0	1/1:35:0,35:0:0:35:1245:-112.353,-10.5361,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:21:6,15:6:216:15:521:-40.8947,0,-13.4689	0/1:76:37,39:37:1320:39:1404:-103.781,0,-96.2237	1/1:145:0,145:0:0:145:5181:-466.429,-43.6494,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:154:73,81:73:2624:81:2900:-214.877,0,-190.048	1/1:99:0,99:0:0:99:3556:-320.247,-29.802,0	0/1:59:32,27:32:1152:27:972:-70.0371,0,-86.2294	1/1:349:0,349:0:0:349:12422:-1117.82,-105.059,0	0/1:181:101,80:101:3616:80:2876:-204.59,0,-271.159	0/1:30:10,20:10:360:20:701:-54.3808,0,-23.7134	0/1:148:62,86:62:2224:86:3073:-232.245,0,-155.872	0/1:137:46,91:46:1652:91:3268:-253.098,0,-107.727	0/1:96:49,47:49:1756:47:1692:-123.668,0,-129.425	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:145:86,59:86:3096:59:2101:-145.706,0,-235.217	1/1:146:0,146:0:0:146:5236:-471.376,-43.9504,0	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:164:71,93:71:2548:93:3324:-250.009,0,-180.193	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:191:97,93:97:3472:93:3328:-241.896,0,-255.269	0/1:32:15,17:15:540:17:597:-44.4232,0,-39.3036	1/1:48:0,48:0:0:48:1701:-153.375,-14.4494,0	1/1:163:0,163:0:0:163:5807:-522.7,-49.0679,0	0/1:187:83,104:83:2957:104:3726:-279.243,0,-210.07	1/1:289:0,289:0:0:289:10248:-922.25,-86.9977,0	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	0/1:138:62,76:62:2232:76:2728:-204.221,0,-159.601	1/1:124:0,124:0:0:124:4438:-399.59,-37.3277,0	0/1:10:2,8:2:72:8:280:-22.529,0,-3.82642	1/1:149:0,149:0:0:149:5323:-479.202,-44.8535,0	0/1:94:45,49:45:1608:49:1756:-130.026,0,-116.713	0/1:16:9,7:9:320:7:233:-16.4778,0,-24.3259	0/1:184:76,108:76:2711:108:3851:-291.396,0,-188.844	1/1:54:0,54:0:0:54:1921:-173.165,-16.2556,0	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:70:40,30:40:1421:30:1066:-75.178,0,-107.113	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	1/1:262:1,261:1:36:261:9333:-836.336,-75.2716,0	1/1:206:0,206:0:0:206:7380:-664.244,-62.0122,0	0/1:47:15,32:15:536:32:1132:-88.0383,0,-34.4264	0/1:112:58,54:58:2084:54:1917:-139.09,0,-154.115	1/1:252:1,251:1:36:251:8965:-803.232,-72.2613,0	1/1:143:0,143:0:0:143:5085:-457.794,-43.0473,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:86:0,86:0:0:86:3042:-274.009,-25.8886,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	1/1:144:0,144:0:0:144:5133:-462.115,-43.3483,0	0/1:103:48,55:48:1724:55:1968:-146.389,0,-124.439	1/1:122:0,122:0:0:122:4317:-388.707,-36.7257,0	1/1:151:0,151:0:0:151:5378:-484.151,-45.4555,0	0/1:179:84,95:84:2997:95:3378:-250.35,0,-216.076	1/1:158:0,157:0:0:157:5606:-504.3,-47.2617,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:141:1,140:1:36:140:5008:-447.269,-38.847,0	1/1:89:0,89:0:0:89:3185:-286.873,-26.7917,0	1/1:267:0,267:0:0:267:9537:-857.795,-80.375,0	0/1:47:25,22:25:900:22:792:-57.4573,0,-67.1726	1/1:33:0,33:0:0:33:1147:-103.532,-9.93399,0	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:115:56,59:56:2016:59:2109:-155.46,0,-147.094	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:28:19,9:19:684:9:324:-21.077,0,-53.4615	0/1:60:24,36:24:856:36:1284:-97.801,0,-59.2993	0/1:58:38,20:38:1364:20:720:-47.669,0,-105.601	1/1:108:0,108:0:0:108:3848:-346.516,-32.5112,0	1/1:75:0,75:0:0:75:2666:-240.181,-22.5773,0
chr06	34923862	.	T	C	110219	PASS	AB=0.467164;ABP=34.3832;AC=143;AF=0.777174;AN=184;AO=5407;CIGAR=1X;DP=7214;DPB=7214;DPRA=0;EPP=11709.4;EPPR=3907.32;GTI=1;LEN=1;MEANALT=1.05435;MQM=60;MQMR=60;NS=92;NUMALT=1;ODDS=0.895228;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188490;QR=63187;RO=1802;RPL=2;RPP=11726.8;RPPR=3916;RPR=5405;RUN=1;SAF=4;SAP=11709.4;SAR=5403;SRF=1;SRP=3907.32;SRR=1801;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:25,8:25:896:8:284:-15.9694,0,-71.0264	0/1:83:52,31:52:1844:31:1088:-73.2437,0,-141.255	0/1:71:34,37:34:1208:37:1300:-95.9281,0,-87.653	1/1:186:0,186:0:0:186:6483:-583.573,-55.9916,0	1/1:63:0,63:0:0:63:2195:-197.814,-18.9649,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	1/1:52:0,52:0:0:52:1772:-159.758,-15.6536,0	0/1:91:50,41:50:1772:41:1436:-102.142,0,-132.369	1/1:65:0,65:0:0:65:2296:-206.902,-19.567,0	0/1:135:82,53:82:2891:53:1840:-125.238,0,-219.79	0/1:53:22,31:22:775:31:1092:-82.635,0,-54.1166	1/1:69:0,69:0:0:69:2420:-218.058,-20.7711,0	1/1:47:0,47:0:0:47:1620:-146.088,-14.1484,0	0/1:74:40,34:40:1399:34:1166:-82.9659,0,-103.93	0/1:46:26,20:26:915:20:694:-48.933,0,-68.8182	1/1:46:0,46:0:0:46:1581:-142.577,-13.8474,0	1/1:56:0,56:0:0:56:1964:-177.036,-16.8577,0	1/1:40:0,40:0:0:40:1416:-127.737,-12.0412,0	0/1:34:14,20:14:492:20:712:-54.1716,0,-34.3773	0/1:122:76,46:76:2650:46:1598:-107.379,0,-202.021	1/1:108:0,108:0:0:108:3794:-341.664,-32.5112,0	1/1:78:0,78:0:0:78:2716:-244.686,-23.4803,0	0/1:84:44,40:44:1568:40:1408:-101.728,0,-116.125	1/1:120:2,117:2:72:117:4051:-357.949,-29.3457,0	0/1:47:27,20:27:956:20:708:-49.8972,0,-72.2073	1/1:318:3,314:3:100:314:10841:-966.29,-86.4492,0	0/1:204:96,108:96:3378:108:3779:-278.901,0,-242.829	0/1:40:22,18:22:780:18:632:-45.1656,0,-58.4818	0/1:198:111,87:111:3882:87:3035:-213.779,0,-289.975	0/1:129:76,53:76:2666:53:1844:-127.405,0,-201.355	0/1:108:56,52:56:1950:52:1789:-128.777,0,-143.264	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	0/1:182:100,82:100:3458:82:2866:-203.392,0,-256.649	1/1:120:2,118:2:72:118:4120:-364.15,-29.2869,0	0/1:66:39,27:39:1372:27:952:-66.1272,0,-103.911	.:.:.:.:.:.:.:.	0/1:100:56,44:56:1951:44:1548:-109.509,0,-145.76	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	0/1:137:77,60:77:2693:60:2073:-145.597,0,-201.375	0/1:71:36,35:36:1261:35:1224:-89.0905,0,-92.417	1/1:61:0,61:0:0:61:2142:-193.047,-18.3628,0	1/1:132:0,132:0:0:132:4611:-415.161,-39.736,0	0/1:110:43,67:43:1528:67:2380:-181.345,0,-104.7	1/1:120:0,120:0:0:120:4176:-376.029,-36.1236,0	1/1:88:0,88:0:0:88:3095:-278.781,-26.4906,0	0/1:113:52,61:52:1813:61:2129:-157.86,0,-129.433	1/1:126:0,126:0:0:126:4317:-388.715,-37.9298,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:63:2,60:2:72:60:2116:-183.873,-12.187,0	0/1:42:25,17:25:887:17:596:-41.3245,0,-67.5049	0/1:35:20,15:20:700:15:536:-38.0388,0,-52.7874	0/1:82:46,36:46:1605:36:1246:-87.7533,0,-120.053	1/1:34:1,33:1:36:33:1150:-100.206,-6.63675,0	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:99:48,51:48:1678:51:1785:-131.128,0,-121.503	1/1:120:3,116:3:108:116:4024:-352.281,-26.1072,0	0/1:5:1,4:1:36:4:127:-10.2393,0,-2.09312	1/1:180:3,177:3:104:177:6195:-547.957,-44.4826,0	1/1:109:0,109:0:0:109:3787:-341.031,-32.8123,0	0/1:45:18,27:18:636:27:935:-70.9158,0,-44.0217	0/1:42:27,15:27:916:15:511:-33.67,0,-70.1043	1/1:151:0,151:0:0:151:5300:-477.143,-45.4555,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	1/1:9:0,9:0:0:9:299:-27.2332,-2.70927,0	1/1:26:0,26:0:0:26:920:-83.1171,-7.82678,0	1/1:70:0,70:0:0:70:2412:-217.338,-21.0721,0	0/1:13:9,4:9:312:4:144:-9.40023,0,-24.502	1/1:74:0,74:0:0:74:2608:-234.97,-22.2762,0	0/1:51:20,31:20:704:31:1100:-83.9578,0,-48.332	1/1:150:0,150:0:0:150:5181:-466.443,-45.1545,0	1/1:138:0,138:0:0:138:4804:-432.524,-41.5421,0	0/1:64:40,24:40:1416:24:852:-57.7345,0,-108.471	1/1:43:0,43:0:0:43:1516:-136.733,-12.9443,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:93:0,93:0:0:93:3216:-289.666,-27.9958,0	1/1:80:0,80:0:0:80:2828:-254.761,-24.0824,0	1/1:162:0,161:0:0:161:5538:-498.199,-48.4658,0	0/1:94:36,58:36:1272:58:1994:-151.436,0,-86.4861	1/1:43:0,43:0:0:43:1477:-133.221,-12.9443,0	0/1:83:45,38:45:1590:38:1310:-93.2122,0,-118.403	0/1:175:83,92:83:2896:92:3203:-235.814,0,-208.198	0/1:21:10,11:10:352:11:396:-29.6611,0,-25.6966	1/1:85:0,85:0:0:85:2988:-269.156,-25.5876,0	1/1:66:0,66:0:0:66:2300:-207.264,-19.868,0	0/1:21:11,10:11:387:10:356:-26.0596,0,-28.8443	0/1:73:40,33:40:1399:33:1168:-83.452,0,-104.228	0/1:74:50,24:50:1703:24:826:-52.3779,0,-131.276	1/1:26:1,25:1:36:25:878:-75.7376,-4.22851,0	1/1:93:0,93:0:0:93:3210:-289.129,-27.9958,0
chr06	34923907	.	A	G	121130	PASS	AB=0.471853;ABP=27.3363;AC=143;AF=0.777174;AN=184;AO=5724;CIGAR=1X;DP=7609;DPB=7609;DPRA=0;EPP=12380.5;EPPR=4057.19;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.9962;MQMR=60;NS=92;NUMALT=1;ODDS=0.775908;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204275;QR=67342;RO=1879;RPL=5720;RPP=12397.8;RPPR=4057.19;RPR=4;RUN=1;SAF=2;SAP=12415.2;SAR=5722;SRF=0;SRP=4083.21;SRR=1879;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:28,9:28:1008:9:320:-18.0042,0,-79.8982	0/1:94:57,37:57:2043:37:1302:-89.183,0,-155.844	0/1:73:36,36:36:1292:36:1296:-94.9293,0,-94.5692	1/1:193:0,191:0:0:191:6820:-613.51,-57.4967,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	0/1:101:53,48:53:1900:48:1716:-124.322,0,-140.874	1/1:69:0,69:0:0:69:2459:-221.564,-20.7711,0	0/1:139:83,56:83:2984:56:2000:-138.431,0,-226.948	0/1:55:22,33:22:792:33:1180:-89.9514,0,-55.049	1/1:79:0,79:0:0:79:2819:-253.949,-23.7814,0	1/1:50:0,50:0:0:50:1777:-160.213,-15.0515,0	0/1:79:42,37:42:1494:37:1328:-96.0409,0,-110.972	0/1:51:27,23:27:959:23:817:-58.4218,0,-71.2142	1/1:48:0,48:0:0:48:1702:-153.464,-14.4494,0	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:43:0,43:0:0:43:1543:-139.163,-12.9443,0	0/1:36:11,25:11:396:25:891:-69.6723,0,-25.1457	0/1:126:78,48:78:2804:48:1712:-116.436,0,-214.669	1/1:113:0,113:0:0:113:4034:-363.249,-34.0164,0	1/1:84:0,83:0:0:83:2957:-266.003,-24.9855,0	0/1:91:49,42:49:1733:42:1499:-107.81,0,-128.859	1/1:123:2,121:2:72:121:4312:-381.419,-30.19,0	0/1:48:27,21:27:972:21:744:-52.8349,0,-73.3485	1/1:328:3,324:3:104:324:11565:-1031.02,-89.0905,0	0/1:211:98,113:98:3503:113:4025:-298.921,0,-251.963	0/1:40:22,18:22:792:18:648:-46.6107,0,-59.5645	0/1:209:114,95:114:4096:95:3386:-242.04,0,-305.909	0/1:132:75,57:75:2684:57:2031:-143.326,0,-202.069	0/1:108:55,53:55:1972:53:1890:-137.866,0,-145.244	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:187:104,83:104:3723:83:2960:-210.342,0,-278.978	1/1:128:2,126:2:72:126:4488:-397.253,-31.6951,0	0/1:67:38,29:38:1360:29:1044:-74.1058,0,-102.532	.:.:.:.:.:.:.:.	0/1:115:62,53:62:2220:53:1899:-136.569,0,-165.446	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:149:84,65:84:3015:65:2324:-164.567,0,-226.726	0/1:73:37,36:37:1332:36:1288:-94.2484,0,-98.2072	1/1:65:0,65:0:0:65:2301:-207.35,-19.567,0	1/1:136:0,136:0:0:136:4839:-435.667,-40.9401,0	0/1:116:44,72:44:1576:72:2588:-198.249,0,-107.212	1/1:121:0,121:0:0:121:4319:-388.887,-36.4246,0	1/1:90:0,90:0:0:90:3207:-288.853,-27.0927,0	0/1:116:53,63:53:1900:63:2241:-167.034,0,-136.358	1/1:135:0,135:0:0:135:4828:-434.675,-40.6391,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:67:2,65:2:72:65:2331:-203.212,-13.3323,0	0/1:45:27,18:27:968:18:634:-43.8408,0,-73.891	0/1:41:24,17:24:860:17:612:-43.0712,0,-65.3796	0/1:88:49,39:49:1749:39:1379:-97.9173,0,-131.202	1/1:34:1,33:1:36:33:1184:-103.27,-6.63675,0	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:103:49,54:49:1752:54:1932:-143.15,0,-126.958	1/1:123:3,120:3:108:120:4308:-377.82,-26.9515,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:192:0,192:0:0:192:6863:-617.74,-57.7978,0	1/1:113:0,113:0:0:113:4047:-364.417,-34.0164,0	0/1:47:21,26:21:752:26:923:-69.2384,0,-53.8578	0/1:44:29,15:29:1044:15:540:-35.6912,0,-81.0295	1/1:159:0,159:0:0:159:5673:-510.689,-47.8638,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:12:0,12:0:0:12:406:-36.8642,-3.61236,0	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	1/1:76:0,76:0:0:76:2710:-244.145,-22.8783,0	0/1:14:10,4:10:356:4:144:-9.0992,0,-28.1668	1/1:90:0,90:0:0:90:3189:-287.234,-27.0927,0	0/1:54:20,34:20:716:34:1208:-92.7705,0,-48.5121	1/1:162:0,162:0:0:162:5774:-519.777,-48.7669,0	1/1:145:0,145:0:0:145:5198:-467.955,-43.6494,0	0/1:76:44,32:44:1567:32:1140:-80.0309,0,-118.443	1/1:50:0,50:0:0:50:1769:-159.491,-15.0515,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:96:0,96:0:0:96:3435:-309.363,-28.8989,0	1/1:90:0,90:0:0:90:3186:-286.965,-27.0927,0	1/1:163:0,163:0:0:163:5828:-524.631,-49.0679,0	0/1:102:41,61:41:1472:61:2192:-166.84,0,-102.071	1/1:45:0,45:0:0:45:1598:-144.109,-13.5464,0	0/1:88:47,41:47:1692:41:1463:-105.475,0,-126.076	0/1:174:85,89:85:3052:89:3175:-233.595,0,-222.53	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	1/1:92:0,92:0:0:92:3296:-296.859,-27.6948,0	1/1:75:0,75:0:0:75:2664:-240.005,-22.5773,0	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/1:78:42,36:42:1512:36:1284:-92.3831,0,-112.894	0/1:78:54,24:54:1936:24:856:-53.8808,0,-151.036	1/1:25:1,24:1:36:24:856:-73.7628,-3.92748,0	1/1:96:0,96:0:0:96:3409:-307.025,-28.8989,0
chr06	34983251	.	A	G	27845.6	PASS	AB=0.479955;ABP=15.3721;AC=44;AF=0.234043;AN=188;AO=1730;CIGAR=1X;DP=8298;DPB=8298;DPRA=1.1094;EPP=3759.66;EPPR=14263.1;GTI=1;LEN=1;MEANALT=1.01724;MQM=55.8387;MQMR=54.954;NS=94;NUMALT=1;ODDS=0.583018;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61528;QR=235223;RO=6567;RPL=0;RPP=3759.66;RPPR=14263.1;RPR=1730;RUN=1;SAF=1730;SAP=3759.66;SAR=0;SRF=6567;SRP=14263.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:9,12:9:324:12:410:-30.84,0,-23.1427	0/1:115:59,56:59:2124:56:1993:-144.423,0,-156.67	0/1:207:115,92:115:4105:92:3249:-229.624,0,-305.935	0/0:253:253,0:253:9034:0:0:0,-76.1606,-811.868	0/0:52:48,4:48:1705:4:144:0,-2.34954,-140.246	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7346	0/0:158:158,0:158:5684:0:0:0,-47.5627,-511.142	0/1:127:75,52:75:2700:52:1845:-127.562,0,-204.811	0/0:47:46,1:46:1656:1:36:0,-10.5552,-145.622	0/1:100:50,50:50:1792:50:1766:-129.065,0,-131.292	0/1:63:34,29:34:1224:29:1044:-75.2283,0,-91.3821	0/0:49:48,1:48:1728:1:36:0,-11.1522,-152.066	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.597	0/1:92:49,43:49:1764:43:1540:-110.936,0,-131.157	0/1:44:24,20:24:864:20:720:-51.8027,0,-64.7598	0/0:50:50,0:50:1800:0:0:0,-15.0515,-161.446	0/0:76:76,0:76:2732:0:0:0,-22.8783,-245.925	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.229	0/1:28:13,15:13:468:15:536:-39.8894,0,-33.9122	0/1:214:106,108:106:3774:108:3834:-279.782,0,-274.599	0/0:116:116,0:116:4176:0:0:0,-34.9195,-375.266	0/0:178:178,0:178:6380:0:0:0,-53.5833,-573.226	0/1:20:10,10:10:360:10:356:-26.2606,0,-26.6967	0/0:79:77,2:77:2745:2:72:0,-16.9496,-240.139	0/1:55:22,33:22:788:33:1173:-89.2416,0,-54.5607	0/0:267:265,2:265:9494:2:57:0,-74.9617,-847.416	0/1:165:79,86:79:2825:86:3055:-225.076,0,-204.195	0/1:15:9,6:9:324:6:212:-14.87,0,-24.96	0/1:289:147,142:147:5253:142:5020:-364.842,0,-385.393	0/1:103:54,49:54:1936:49:1752:-126.815,0,-143.328	0/1:14:9,5:9:316:5:176:-11.9103,0,-24.5448	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6459	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.2289	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5401	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6651	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5401	0/1:119:57,62:57:2052:62:2212:-163.277,0,-148.92	0/0:221:221,0:221:7905:0:0:0,-66.5276,-710.639	0/1:62:30,32:30:1072:32:1148:-84.7287,0,-77.8926	1/1:6:0,6:0:0:6:216:-19.7703,-1.80618,0	0/1:159:84,75:84:3012:75:2649:-190.526,0,-223.156	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.861	0/1:87:45,42:45:1612:42:1493:-107.976,0,-118.255	0/1:37:18,19:18:648:19:680:-50.3729,0,-47.4349	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.255	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.057	0/1:102:51,50:51:1828:50:1788:-130.037,0,-133.874	0/0:151:151,0:151:5412:0:0:0,-45.4555,-486.371	0/0:126:126,0:126:4497:0:0:0,-37.9298,-404.497	0/1:139:74,65:74:2656:65:2309:-166.153,0,-196.77	0/0:188:188,0:188:6714:0:0:0,-56.5936,-602.345	0/1:13:10,3:10:360:3:108:-6.15896,0,-28.7642	0/0:157:156,1:156:5589:1:36:0,-43.6685,-499.017	0/1:49:37,12:37:1309:12:432:-24.4115,0,-101.79	0/1:15:7,8:7:248:8:288:-21.7147,0,-18.1336	0/1:171:100,71:100:3592:71:2537:-176.623,0,-270.705	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.8861	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0648	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.57	0/1:42:27,15:27:972:15:540:-36.258,0,-75.0269	0/0:129:127,2:127:4568:2:72:0,-31.9981,-403.726	0/1:7:2,5:2:72:5:176:-14.0708,0,-4.72247	0/0:165:165,0:165:5916:0:0:0,-49.6699,-530.512	0/0:209:207,2:207:7412:2:72:0,-56.0805,-659.331	0/1:78:42,36:42:1508:36:1287:-92.4713,0,-111.125	0/1:90:43,47:43:1544:47:1654:-121.947,0,-111.991	0/0:98:98,0:98:3509:0:0:0,-29.5009,-315.583	0/0:112:112,0:112:4012:0:0:0,-33.7154,-360.818	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.2392	0/0:95:94,1:94:3372:1:36:0,-24.9996,-299.418	0/0:61:60,1:60:2156:1:36:0,-14.7646,-190.209	0/1:30:12,18:12:432:18:633:-48.2414,0,-30.1103	0/0:161:159,2:159:5712:2:68:0,-42.0081,-506.382	0/1:60:31,29:31:1112:29:1006:-72.5401,0,-82.2105	0/0:71:70,1:70:2497:1:36:0,-17.7749,-221.122	0/0:142:142,0:142:5062:0:0:0,-42.7463,-454.709	0/1:135:71,64:71:2544:64:2287:-164.785,0,-188.386	0/0:103:101,2:101:3624:2:72:0,-24.1791,-319.105	0/0:10:10,0:10:352:0:0:0,-3.0103,-31.9959	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.153	0/0:157:157,0:157:5617:0:0:0,-47.2617,-503.15	0/0:221:220,1:220:7874:1:36:0,-62.9384,-703.94	0/1:92:56,36:56:2016:36:1292:-88.587,0,-153.11	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.779	0/1:48:28,20:28:1008:20:716:-50.2938,0,-76.4562	0/1:76:35,41:35:1260:41:1476:-110.219,0,-90.6876	0/1:35:14,21:14:500:21:737:-55.7134,0,-34.7651	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.404	0/0:75:75,0:75:2655:0:0:0,-22.5772,-238.842	0/1:59:30,29:30:1076:29:1044:-76.4507,0,-79.3057	0/1:133:61,72:61:2173:72:2583:-192.371,0,-155.606	0/1:32:12,20:12:432:20:711:-54.6099,0,-29.4206	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.236	0/0:72:71,1:71:2548:1:36:0,-18.0769,-225.147
chr06	34983288	.	G	A	28704.1	PASS	AB=0.486425;ABP=8.66988;AC=44;AF=0.234043;AN=188;AO=1744;CIGAR=1X;DP=8205;DPB=8205;DPRA=1.0169;EPP=3790.06;EPPR=14017.7;GTI=1;LEN=1;MEANALT=1.0566;MQM=55.7265;MQMR=55.0243;NS=94;NUMALT=1;ODDS=1.76136;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62485;QR=230069;RO=6454;RPL=1744;RPP=3790.06;RPPR=14009;RPR=0;RUN=1;SAF=1744;SAP=3790.06;SAR=0;SRF=6453;SRP=14009;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:8,12:8:288:12:432:-33.0059,0,-20.2279	0/1:111:57,54:57:2013:54:1936:-140.606,0,-147.896	0/1:204:111,93:111:3967:93:3340:-238.508,0,-294.122	0/0:253:252,0:252:8936:0:0:0,-75.8596,-802.796	0/0:52:48,4:48:1724:4:144:0,-2.34954,-141.904	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.3754	0/0:153:151,0:151:5370:0:0:0,-45.4555,-482.585	0/1:126:74,52:74:2627:52:1834:-126.774,0,-198.574	0/0:47:46,1:46:1644:1:36:0,-10.5552,-144.546	0/1:101:50,51:50:1785:51:1836:-135.01,0,-130.366	0/1:65:36,29:36:1283:29:1044:-74.6263,0,-96.0872	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.798	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.663	0/1:94:48,46:48:1728:46:1652:-120.048,0,-127.32	0/1:45:24,21:24:864:21:752:-54.3621,0,-64.4587	0/0:50:50,0:50:1752:0:0:0,-15.0515,-157.495	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.563	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.795	0/1:27:13,14:13:468:14:504:-37.3154,0,-34.2132	0/1:216:106,110:106:3774:110:3941:-288.298,0,-273.713	0/0:112:112,0:112:3958:0:0:0,-33.7154,-355.869	0/0:175:175,0:175:6219:0:0:0,-52.6802,-559.029	0/1:21:10,11:10:345:11:396:-29.5589,0,-25.0322	0/0:78:76,2:76:2694:2:72:0,-16.6485,-235.595	0/1:55:22,33:22:792:33:1184:-90.2335,0,-54.9196	0/0:261:261,0:261:9308:0:0:0,-78.5688,-836.445	0/1:164:78,86:78:2788:86:3092:-228.052,0,-201.356	0/1:16:9,7:9:324:7:252:-18.1695,0,-24.659	0/1:288:144,144:144:5149:144:5161:-377.196,0,-376.262	0/1:103:55,48:55:1963:48:1724:-124.293,0,-145.759	0/1:15:10,5:10:360:5:180:-11.9757,0,-28.1766	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6459	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.2111	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5401	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3046	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5401	0/1:120:57,63:57:2021:63:2248:-166.197,0,-145.856	0/0:214:214,0:214:7628:0:0:0,-64.4204,-685.805	0/1:63:29,34:29:1035:34:1216:-90.4865,0,-74.2683	1/1:6:0,6:0:0:6:216:-19.7703,-1.80618,0	0/1:159:83,75:83:2984:75:2684:-193.582,0,-220.587	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.153	0/1:87:45,42:45:1612:42:1502:-108.005,0,-118.252	0/1:37:18,19:18:624:19:680:-50.3729,0,-45.2707	0/0:40:40,0:40:1397:0:0:0,-12.0412,-125.646	0/0:71:71,0:71:2556:0:0:0,-21.3731,-229.762	0/1:99:48,51:48:1716:51:1828:-134.52,0,-124.767	0/0:145:144,0:144:5139:0:0:0,-43.3483,-461.798	0/0:125:124,1:124:4429:1:36:0,-34.0395,-394.8	0/1:143:75,68:75:2683:68:2444:-177.053,0,-198.071	0/0:186:186,0:186:6619:0:0:0,-55.9916,-593.833	0/1:13:10,3:10:356:3:108:-6.15896,0,-28.4181	0/0:155:154,1:154:5513:1:36:0,-43.0665,-492.2	0/1:44:34,10:34:1197:10:360:-19.4611,0,-94.6846	0/1:14:6,8:6:216:8:288:-22.0157,0,-15.5618	0/1:168:98,70:98:3498:70:2520:-175.905,0,-264.099	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.1667	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0648	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.118	0/1:42:27,15:27:972:15:525:-34.9018,0,-75.0269	0/0:128:126,2:126:4454:2:72:0,-31.697,-393.512	0/1:7:2,5:2:72:5:165:-13.0553,0,-4.72247	0/0:158:156,1:156:5589:1:36:0,-43.968,-498.155	0/0:204:201,3:201:7155:3:108:0,-51.3453,-633.096	0/1:75:40,35:40:1421:35:1256:-90.5943,0,-104.207	0/1:91:43,48:43:1529:48:1724:-127.943,0,-110.353	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.505	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.288	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.1633	0/0:95:95,0:95:3378:0:0:0,-28.5978,-303.559	0/0:61:61,0:61:2188:0:0:0,-18.3628,-196.688	0/1:29:12,17:12:413:17:612:-46.6608,0,-28.7072	0/0:160:160,0:160:5658:0:0:0,-48.1648,-508.333	0/1:59:31,28:31:1116:28:1008:-73.0212,0,-82.8705	0/0:70:70,0:70:2463:0:0:0,-21.0721,-221.676	0/0:138:138,0:138:4945:0:0:0,-41.5421,-444.714	0/1:132:69,63:69:2452:63:2245:-161.917,0,-181.036	0/0:102:100,2:100:3587:2:72:0,-23.878,-315.886	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.543	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.274	0/0:153:153,0:153:5483:0:0:0,-46.0576,-492.377	0/0:220:220,0:220:7883:0:0:0,-66.2266,-708.309	0/1:90:52,37:52:1849:37:1320:-91.8917,0,-139.501	0/0:48:48,0:48:1693:0:0:0,-14.4494,-152.479	0/1:51:30,21:30:1076:21:752:-52.6184,0,-81.6712	0/1:77:34,43:34:1216:43:1540:-115.484,0,-86.4422	0/1:35:14,21:14:496:21:756:-57.4228,0,-34.4046	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.742	0/0:73:73,0:73:2611:0:0:0,-21.9752,-234.89	0/1:59:32,27:32:1144:27:964:-69.2555,0,-85.4224	0/1:136:58,78:58:2067:78:2788:-209.888,0,-145.181	0/1:35:12,23:12:428:23:828:-64.2318,0,-28.1571	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.201	0/0:69:68,1:68:2432:1:36:0,-17.1738,-215.028
chr06	35077621	.	T	C	124461	PASS	AB=0.499187;ABP=3.02795;AC=142;AF=0.763441;AN=186;AO=5829;CIGAR=1X;DP=7388;DPB=7388;DPRA=40.1413;EPP=12660.5;EPPR=3357.99;GTI=3;LEN=1;MEANALT=1.02174;MQM=60;MQMR=60;NS=93;NUMALT=1;ODDS=0.0577322;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208004;QR=55796;RO=1557;RPL=0;RPP=12660.5;RPPR=3357.99;RPR=5829;RUN=1;SAF=0;SAP=12660.5;SAR=5829;SRF=0;SRP=3383.99;SRR=1557;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:17,17:17:608:17:597:-43.822,0,-44.817	0/1:110:50,60:50:1792:60:2139:-159.664,0,-128.449	0/1:104:54,50:54:1940:50:1792:-130.255,0,-143.569	1/1:210:1,209:1:36:209:7473:-669.015,-59.618,0	1/1:57:0,57:0:0:57:2026:-182.611,-17.1587,0	1/1:39:0,39:0:0:39:1389:-125.307,-11.7402,0	1/1:91:0,91:0:0:91:3247:-292.451,-27.3937,0	0/1:115:63,52:63:2260:52:1851:-132.251,0,-169.044	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:59:25,34:25:900:34:1197:-90.2726,0,-63.5602	0/1:23:15,8:15:521:8:288:-19.3437,0,-40.2926	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:51:0,51:0:0:51:1806:-162.82,-15.3525,0	0/1:29:13,16:13:464:16:568:-42.722,0,-33.3676	0/1:43:20,23:20:720:23:815:-60.7265,0,-52.1845	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:210:108,102:108:3868:102:3647:-265.218,0,-285.099	1/1:129:0,129:0:0:129:4613:-415.332,-38.8329,0	1/1:112:0,112:0:0:112:3994:-359.649,-33.7154,0	0/1:87:36,51:36:1288:51:1828:-138.611,0,-90.034	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	0/1:69:39,30:39:1400:30:1071:-75.9305,0,-105.528	1/1:325:1,324:1:36:324:11599:-1040.18,-94.2365,0	0/1:199:92,107:92:3296:107:3814:-283.551,0,-236.954	0/1:17:10,7:10:356:7:248:-17.5467,0,-27.2637	0/1:271:137,134:137:4924:134:4797:-350.306,0,-361.729	0/1:101:40,61:40:1432:61:2152:-163.541,0,-98.7736	0/1:129:67,62:67:2385:62:2199:-159.34,0,-176.073	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:85:49,35:49:1760:35:1260:-88.0591,0,-133.038	1/1:191:0,191:0:0:191:6825:-614.32,-57.4967,0	0/1:28:16,12:16:572:12:424:-30.0676,0,-43.3846	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:133:57,76:57:2029:76:2697:-202.937,0,-142.844	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	0/1:155:52,103:52:1872:103:3684:-285.103,0,-122.099	0/1:28:17,11:17:608:11:375:-25.6482,0,-46.6232	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	1/1:82:0,82:0:0:82:2931:-264.024,-24.6845,0	0/1:130:58,72:58:2084:72:2592:-194.394,0,-148.696	1/1:162:3,159:3:108:159:5680:-501.243,-38.6917,0	1/1:121:2,119:2:72:119:4259:-376.652,-29.5879,0	0/1:121:67,54:67:2400:54:1932:-137.732,0,-179.832	1/1:71:0,71:0:0:71:2532:-228.13,-21.3731,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:141:0,141:0:0:141:5040:-453.744,-42.4452,0	0/1:34:18,16:18:648:16:576:-41.94,0,-48.4169	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:119:82,37:82:2933:37:1309:-82.288,0,-228.38	1/1:40:0,40:0:0:40:1421:-128.185,-12.0412,0	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:60:33,27:33:1188:27:968:-69.3756,0,-89.1668	1/1:70:0,70:0:0:70:2499:-225.162,-21.0721,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:209:1,208:1:36:208:7438:-665.866,-59.317,0	1/1:169:5,163:5:180:163:5823:-507.629,-34.3808,0	0/1:54:31,23:31:1104:23:824:-58.2277,0,-83.415	0/1:91:40,51:40:1436:51:1815:-136.236,0,-102.144	1/1:146:0,146:0:0:146:5208:-468.858,-43.9504,0	1/1:107:1,106:1:36:106:3790:-337.699,-28.6119,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:75:0,75:0:0:75:2682:-241.625,-22.5773,0	1/1:61:0,61:0:0:61:2147:-193.495,-18.3628,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:155:0,155:0:0:155:5505:-495.576,-46.6597,0	0/1:41:24,17:24:860:17:597:-41.7139,0,-65.3796	1/1:158:0,158:0:0:158:5633:-507.092,-47.5627,0	1/1:133:1,132:1:36:132:4715:-420.911,-36.4387,0	0/1:84:38,46:38:1368:46:1656:-124.042,0,-98.1343	1/1:70:0,70:0:0:70:2484:-223.812,-21.0721,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:114:0,114:0:0:114:4073:-366.755,-34.3174,0	1/1:108:0,108:0:0:108:3854:-347.053,-32.5112,0	1/1:222:0,222:0:0:222:7959:-716.331,-66.8287,0	0/1:61:34,27:34:1216:27:957:-68.081,0,-91.3837	1/1:36:0,36:0:0:36:1276:-115.142,-10.8371,0	0/1:45:29,16:29:1040:16:564:-37.5434,0,-80.368	0/1:69:31,38:31:1112:38:1351:-101.119,0,-79.6203	0/1:27:16,11:16:572:11:396:-27.8549,0,-43.6856	1/1:53:0,53:0:0:53:1883:-169.748,-15.9546,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	0/1:19:12,7:12:432:7:235:-15.7576,0,-33.5016	0/1:25:12,13:12:432:13:453:-33.5739,0,-31.6954	0/1:30:24,6:24:864:6:216:-10.7596,0,-69.0517	1/1:100:0,100:0:0:100:3549:-319.617,-30.103,0	1/1:48:1,47:1:36:47:1673:-147.257,-10.8512,0
chr06	35077654	.	T	A	25166.1	PASS	AB=0.494171;ABP=3.92164;AC=44;AF=0.236559;AN=186;AO=1539;CIGAR=1X;DP=7461;DPB=7461;DPRA=1.08059;EPP=3344.91;EPPR=12858.1;GTI=3;LEN=1;MEANALT=1;MQM=59.9994;MQMR=59.9926;NS=93;NUMALT=1;ODDS=0.985654;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54638;QR=210832;RO=5920;RPL=1539;RPP=3344.91;RPPR=12858.1;RPR=0;RUN=1;SAF=0;SAP=3344.91;SAR=1539;SRF=0;SRP=12858.1;SRR=5920;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:17,17:17:608:17:578:-42.1024,0,-44.817	0/1:110:60,50:60:2141:50:1792:-128.449,0,-159.843	0/1:104:51,53:51:1816:53:1855:-135.917,0,-132.414	0/0:212:212,0:212:7491:0:0:0,-63.8184,-674.233	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:38:38,0:38:1334:0:0:0,-11.4391,-120.356	0/0:93:93,0:93:3305:0:0:0,-27.9958,-297.669	0/1:115:52,63:52:1864:63:2237:-166.973,0,-133.421	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/1:60:35,25:35:1241:25:900:-63.2592,0,-93.9307	0/1:23:9,14:9:324:14:481:-36.6908,0,-22.5822	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/1:30:16,14:16:576:14:485:-34.9461,0,-43.1441	0/1:42:22,20:22:773:20:701:-50.7685,0,-57.2462	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:210:103,107:103:3681:107:3825:-281.229,0,-268.275	0/0:132:132,0:132:4720:0:0:0,-39.736,-424.96	0/0:114:114,0:114:4058:0:0:0,-34.3174,-365.406	0/1:87:51,36:51:1813:36:1253:-86.8783,0,-137.26	0/0:86:86,0:86:3060:0:0:0,-25.8886,-275.631	0/1:69:32,37:32:1129:37:1328:-99.0512,0,-81.1453	0/0:324:323,1:323:11501:1:36:0,-93.9354,-1031.37	0/1:199:107,92:107:3809:92:3258:-233.534,0,-283.103	0/1:17:7,10:7:237:10:356:-27.2637,0,-16.5415	0/1:274:137,137:137:4839:137:4902:-358.849,0,-353.184	0/1:101:61,40:61:2123:40:1421:-97.7814,0,-160.93	0/1:128:63,65:63:2260:65:2317:-170.257,0,-165.131	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:86:38,48:38:1368:48:1728:-129.917,0,-97.5322	0/0:189:189,0:189:6762:0:0:0,-56.8947,-608.65	0/1:26:12,14:12:432:14:496:-37.1475,0,-31.3944	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:132:76,56:76:2736:56:1982:-138.915,0,-206.746	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:158:104,54:104:3694:54:1906:-124.251,0,-285.098	0/1:27:11,16:11:381:16:561:-42.6893,0,-26.4928	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605	0/1:134:76,58:76:2732:58:2058:-145.15,0,-205.784	0/0:162:159,3:159:5673:3:104:0,-39.0641,-500.987	0/0:122:122,0:122:4314:0:0:0,-36.7257,-388.436	0/1:119:54,65:54:1936:65:2321:-173.326,0,-138.694	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:141:141,0:141:5045:0:0:0,-42.4452,-454.194	0/1:35:17,18:17:608:18:633:-46.759,0,-44.516	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:122:38,84:38:1360:84:2968:-230.625,0,-85.9749	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	.:.:.:.:.:.:.:.	0/0:11:11,0:11:373:0:0:0,-3.31133,-33.8952	0/1:62:29,33:29:1029:33:1158:-85.8587,0,-74.2573	0/0:72:71,0:71:2506:0:0:0,-21.3731,-225.431	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:212:212,0:212:7509:0:0:0,-63.8184,-675.854	0/0:170:165,5:165:5905:5:180:0,-34.623,-515.006	0/1:55:24,31:24:856:31:1116:-84.195,0,-60.8045	0/1:89:52,37:52:1853:37:1317:-92.0382,0,-140.256	0/0:148:148,0:148:5263:0:0:0,-44.5524,-473.805	0/0:110:109,1:109:3884:1:36:0,-29.515,-346.155	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:77:76,0:76:2713:0:0:0,-22.8783,-244.052	0/0:65:65,0:65:2309:0:0:0,-19.5669,-208.069	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/0:158:158,0:158:5657:0:0:0,-47.5627,-509.058	0/1:42:18,24:18:618:24:826:-62.0084,0,-43.295	0/0:161:161,0:161:5780:0:0:0,-48.4658,-520.313	0/0:139:138,1:138:4888:1:36:0,-38.2449,-436.472	0/1:87:48,39:48:1724:39:1381:-98.3972,0,-129.256	0/0:72:72,0:72:2538:0:0:0,-21.6742,-228.669	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/0:116:116,0:116:4125:0:0:0,-34.9195,-371.435	0/0:107:107,0:107:3776:0:0:0,-32.2102,-340.036	0/0:228:228,0:228:8096:0:0:0,-68.6348,-728.659	0/1:60:27,33:27:953:33:1165:-87.0932,0,-68.0215	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:47:15,32:15:540:32:1148:-89.4814,0,-34.7881	0/1:67:38,29:38:1364:29:1040:-73.7454,0,-102.892	0/1:27:12,15:12:428:15:536:-40.447,0,-30.731	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.28	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:31:6,25:6:201:25:885:-70.6346,0,-9.08511	0/0:102:102,0:102:3649:0:0:0,-30.7051,-328.613	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805
chr06	35110624	.	C	T	17314.1	PASS	AB=0.492359;ABP=4.07219;AC=47;AF=0.25;AN=188;AO=1054;CIGAR=1X;DP=4387;DPB=4387;DPRA=1.15294;EPP=2274.4;EPPR=7108.65;GTI=2;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=0.131406;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37661;QR=119058;RO=3332;RPL=2;RPP=2274.4;RPPR=7108.65;RPR=1052;RUN=1;SAF=1054;SAP=2291.74;SAR=0;SRF=3332;SRP=7238.36;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:14,12:14:495:12:432:-31.3944,0,-37.0563	0/1:23:14,9:14:504:9:309:-21.217,0,-38.7744	0/1:77:25,52:25:891:52:1861:-144.589,0,-57.3295	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/1:74:31,43:31:1112:43:1527:-115.446,0,-78.1151	0/0:68:65,3:65:2320:3:108:0,-10.3949,-198.985	0/1:50:24,26:24:851:26:927:-68.6959,0,-61.858	0/1:38:20,18:20:711:18:644:-46.8515,0,-52.8765	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/0:70:70,0:70:2489:0:0:0,-21.0721,-224.262	0/1:48:24,24:24:864:24:864:-63.6331,0,-63.6331	0/1:57:32,25:32:1140:25:877:-62.0865,0,-85.7505	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:27:19,8:19:680:8:284:-17.7755,0,-53.4014	0/1:43:26,17:26:936:17:612:-42.4691,0,-71.6152	0/0:60:59,1:59:2104:1:36:0,-14.4635,-186.031	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:44:23,21:23:828:21:752:-54.7609,0,-61.5988	0/0:33:33,0:33:1166:0:0:0,-9.93399,-105.246	0/1:42:12,30:12:432:30:1076:-84.5096,0,-26.5779	0/0:127:127,0:127:4542:0:0:0,-38.2308,-408.946	0/1:171:78,93:78:2796:93:3335:-248.89,0,-200.404	0/1:39:24,15:24:864:15:536:-36.8346,0,-66.3424	0/1:102:55,47:55:1967:47:1675:-120.331,0,-146.599	0/1:35:19,16:19:680:16:572:-41.2774,0,-50.9931	0/1:67:37,30:37:1305:30:1075:-76.8936,0,-97.5802	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:114:54,60:54:1923:60:2133:-157.919,0,-139.029	0/0:109:109,0:109:3886:0:0:0,-32.8123,-349.935	0/1:52:25,27:25:900:27:972:-72.1443,0,-65.6675	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:47:30,17:30:1059:17:612:-41.265,0,-81.472	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:41:21,20:21:752:20:716:-52.4255,0,-55.664	0/1:35:17,18:17:612:18:648:-48.1158,0,-44.8774	0/0:38:38,0:38:1342:0:0:0,-11.4391,-121.079	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:51:28,23:28:1004:23:824:-59.1308,0,-75.3233	0/0:67:66,1:66:2359:1:36:0,-16.5707,-208.97	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:56:34,22:34:1212:22:788:-54.3871,0,-92.5286	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:39:23,16:23:828:16:568:-39.7111,0,-63.1039	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:63:31,32:31:1112:32:1148:-84.6649,0,-81.4265	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:50:34,16:34:1212:16:563:-35.9477,0,-94.3348	0/0:64:63,1:63:2264:1:36:0,-15.6676,-200.424	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:88:87,0:87:3089:0:0:0,-26.1896,-277.878	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/1:40:23,17:23:811:17:608:-43.0108,0,-61.2688	0/1:32:10,22:10:360:22:783:-61.16,0,-23.1113	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/0:82:78,4:78:2800:4:144:0,-11.3708,-238.926	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/0:105:105,0:105:3763:0:0:0,-31.6081,-338.868	0/1:59:38,21:38:1352:21:748:-49.8845,0,-104.22	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:49:26,23:26:923:23:828:-60.0936,0,-68.6363	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:40:40,0:40:1405:0:0:0,-12.0412,-126.745	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.709	0/1:56:35,21:35:1248:21:752:-51.1486,0,-95.7672	0/0:60:60,0:60:2151:0:0:0,-18.0618,-193.857	0/1:29:13,16:13:468:16:554:-41.455,0,-33.7298	0/1:80:33,47:33:1188:47:1684:-127.765,0,-83.1462	0/1:19:17,2:17:608:2:72:-1.11715,0,-49.3325	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/1:33:11,22:11:396:22:783:-60.859,0,-26.0488	0/1:107:46,61:46:1652:61:2179:-164.165,0,-116.758	0/1:51:22,29:22:788:29:1044:-78.9223,0,-55.8923	0/0:41:40,1:40:1436:1:36:0,-8.74395,-125.939	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78
chr06	35458471	.	T	A	27172.5	PASS	AB=0.584806;ABP=169.118;AC=49;AF=0.263441;AN=186;AO=1568;CIGAR=1X;DP=4892;DPB=4892;DPRA=1.18644;EPP=3407.88;EPPR=7216.64;GTI=2;LEN=1;MEANALT=1.01887;MQM=59.9649;MQMR=59.9871;NS=93;NUMALT=1;ODDS=0.33279;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55945;QR=117693;RO=3322;RPL=0;RPP=3407.88;RPPR=7216.64;RPR=1568;RUN=1;SAF=0;SAP=3407.88;SAR=1568;SRF=0;SRP=7216.64;SRR=3322;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:29,24:29:1040:24:851:-60.9549,0,-77.9598	0/1:34:8,26:8:280:26:932:-73.9638,0,-15.3043	0/1:68:28,40:28:989:40:1440:-109.428,0,-68.852	0/0:75:75,0:75:2644:0:0:0,-22.5772,-238.206	0/0:55:50,5:50:1775:5:180:0,-0.00458458,-143.48	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:82:18,64:18:644:64:2288:-181.497,0,-33.6061	0/1:32:8,24:8:284:24:855:-67.6372,0,-16.2704	0/1:38:20,18:20:700:18:644:-46.8515,0,-51.8843	0/1:72:47,25:47:1612:25:887:-58.474,0,-123.686	0/0:74:74,0:74:2637:0:0:0,-22.2762,-237.576	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/1:67:40,27:40:1417:27:964:-66.838,0,-107.656	0/1:54:20,34:20:693:34:1193:-91.4165,0,-46.434	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:28:5,23:5:176:23:824:-66.0545,0,-7.75618	0/1:57:14,43:14:500:43:1536:-121.374,0,-28.1775	0/1:86:21,65:21:748:65:2317:-182.9,0,-41.7567	0/0:52:52,0:52:1837:0:0:0,-15.6536,-165.609	0/1:75:19,56:19:680:56:1990:-156.789,0,-38.9519	0/1:44:34,9:34:1216:9:305:-14.6101,0,-96.5881	0/1:73:31,42:31:1100:42:1512:-114.399,0,-77.3351	0/0:68:68,0:68:2401:0:0:0,-20.47,-216.346	0/1:143:49,94:49:1764:94:3344:-258.118,0,-115.996	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:130:34,96:34:1197:96:3444:-271.038,0,-68.8995	0/1:84:35,49:35:1248:49:1735:-131.147,0,-87.3383	0/1:66:20,46:20:716:46:1648:-128.741,0,-44.8997	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:20:19,0:19:676:0:0:0,-5.71957,-60.8084	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:156:75,81:75:2656:81:2912:-215.354,0,-192.324	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.085	0/1:46:23,23:23:808:23:828:-60.9886,0,-59.1927	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:48:16,32:16:576:32:1135:-88.0086,0,-37.7255	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:111:42,69:42:1476:69:2454:-187.7,0,-99.7174	0/1:39:25,14:25:892:14:504:-33.9579,0,-68.8595	0/0:50:50,0:50:1754:0:0:0,-15.0515,-158.14	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/1:68:24,44:24:860:44:1576:-121.655,0,-57.2518	0/0:65:64,1:64:2273:1:32:0,-16.3676,-201.632	0/0:49:49,0:49:1729:0:0:0,-14.7505,-155.893	0/1:46:20,26:20:708:26:932:-70.3515,0,-50.1982	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.016	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:55:54,1:54:1898:1:36:0,-12.9584,-167.496	0/1:49:21,28:21:737:28:1000:-75.5649,0,-51.8998	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:60:23,37:23:816:37:1328:-101.76,0,-55.6999	0/1:27:24,3:24:852:3:104:-1.575,0,-68.8726	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:59:25,34:25:885:34:1211:-91.5347,0,-62.2058	0/0:73:73,0:73:2559:0:0:0,-21.9752,-230.562	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:49:49,0:49:1740:0:0:0,-14.7505,-156.884	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/1:31:14,17:14:504:17:598:-44.8163,0,-36.3662	0/1:33:9,24:9:324:24:848:-66.7057,0,-19.5719	0/0:81:80,1:80:2848:1:36:0,-20.7852,-252.961	0/0:73:70,3:70:2436:3:108:0,-11.9,-209.416	0/0:36:36,0:36:1262:0:0:0,-10.8371,-113.878	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.174	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:77:77,0:77:2732:0:0:0,-23.1793,-246.122	0/1:58:28,30:28:1000:30:1064:-78.6119,0,-72.8556	0/0:70:70,0:70:2474:0:0:0,-21.0721,-222.911	0/0:43:43,0:43:1472:0:0:0,-12.9443,-132.765	0/1:110:32,78:32:1121:78:2787:-217.957,0,-68.0824	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.275	0/1:27:19,8:19:646:8:279:-17.3197,0,-50.1693	0/0:75:75,0:75:2625:0:0:0,-22.5772,-236.496	0/1:35:22,13:22:750:13:455:-30.7459,0,-57.2764	0/1:81:39,42:39:1380:42:1512:-111.991,0,-100.115	0/1:14:8,6:8:276:6:212:-15.2104,0,-20.9608	0/0:75:75,0:75:2661:0:0:0,-22.5772,-239.735	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/1:58:26,32:26:928:32:1148:-86.1701,0,-66.3785	0/1:101:54,47:54:1932:47:1671:-120.273,0,-143.753	0/1:47:17,30:17:589:30:1066:-82.1026,0,-39.1849	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7228	0/0:73:73,0:73:2599:0:0:0,-21.9752,-234.159
chr06	35477980	.	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chr06	35489106	.	A	C	76970.4	PASS	AB=0.429669;ABP=114.802;AC=140;AF=0.76087;AN=184;AO=3740;CIGAR=1X;DP=5235;DPB=5235;DPRA=0;EPP=8124.32;EPPR=3242.85;GTI=2;LEN=1;MEANALT=1.03261;MQM=48.5171;MQMR=48.88;NS=92;NUMALT=1;ODDS=0.674423;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133751;QR=53462;RO=1492;RPL=3740;RPP=8124.32;RPPR=3242.85;RPR=0;RUN=1;SAF=0;SAP=8124.32;SAR=3740;SRF=0;SRP=3242.85;SRR=1492;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:31,11:31:1104:11:396:-23.1444,0,-86.0598	0/1:54:36,18:36:1292:18:648:-42.0783,0,-99.8576	0/1:103:64,39:64:2285:39:1392:-93.9177,0,-171.672	1/1:146:0,146:0:0:146:5174:-461.485,-43.9504,0	1/1:33:1,32:1:36:32:1148:-98.8341,-6.35522,0	1/1:14:0,14:0:0:14:500:-43.9874,-4.21442,0	1/1:33:0,33:0:0:33:1188:-106.647,-9.93399,0	0/1:89:39,50:39:1396:50:1788:-133.563,0,-98.1828	0/1:91:59,32:59:2104:32:1148:-75.6828,0,-161.028	0/1:43:28,15:28:1008:15:540:-35.7269,0,-76.5874	0/1:13:10,3:10:360:3:108:-5.68237,0,-28.6534	1/1:53:0,53:0:0:53:1895:-169.528,-15.9546,0	1/1:45:0,45:0:0:45:1608:-143.291,-13.5464,0	0/1:21:14,7:14:500:7:252:-16.5825,0,-38.795	0/1:36:22,14:22:792:14:504:-34.1895,0,-60.3804	1/1:31:0,31:0:0:31:1093:-97.2941,-9.33193,0	1/1:14:0,14:0:0:14:499:-44.8234,-4.21442,0	1/1:16:0,16:0:0:16:572:-51.4722,-4.81648,0	0/1:20:11,9:11:396:9:320:-22.9679,0,-29.3874	0/1:179:95,84:95:3397:84:3012:-214.979,0,-249.711	0/1:85:53,32:53:1899:32:1152:-77.0344,0,-144.099	1/1:122:0,122:0:0:122:4380:-390.439,-36.7257,0	0/1:114:73,41:73:2624:41:1472:-97.0842,0,-200.606	1/1:40:1,39:1:36:39:1392:-121.345,-8.46243,0	0/1:59:37,22:37:1332:22:788:-52.6946,0,-101.774	1/1:156:0,155:0:0:155:5549:-495.242,-46.6597,0	0/1:134:81,53:81:2893:53:1896:-128.858,0,-217.727	0/1:9:5,4:5:180:4:144:-10.5322,0,-13.757	0/1:210:125,85:125:4496:85:3033:-208.233,0,-336.727	0/1:82:62,20:62:2220:20:720:-39.6685,0,-174.398	0/1:73:33,40:33:1180:40:1440:-106.808,0,-84.0077	1/1:7:0,7:0:0:7:252:-22.488,-2.10721,0	1/1:7:0,7:0:0:7:252:-22.9041,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.12364,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.2414,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.4623,-1.50515,0	0/1:84:50,34:50:1791:34:1224:-84.5992,0,-134.514	1/1:61:0,61:0:0:61:2192:-196.073,-18.3628,0	0/1:28:16,12:16:576:12:428:-30.0166,0,-43.5443	.:.:.:.:.:.:.:.	0/1:69:29,40:29:1040:40:1425:-106.677,0,-72.6427	1/1:15:0,15:0:0:15:536:-48.32,-4.51545,0	0/1:126:77,49:77:2768:49:1745:-118.568,0,-209.949	0/1:18:7,11:7:248:11:396:-30.3691,0,-16.8757	1/1:20:0,20:0:0:20:720:-64.2564,-6.0206,0	1/1:64:0,64:0:0:64:2296:-205.104,-19.2659,0	0/1:81:41,40:41:1472:40:1440:-103.989,0,-107.429	1/1:126:0,126:0:0:126:4496:-399.144,-37.9298,0	1/1:73:1,72:1:36:72:2558:-224.981,-18.3964,0	0/1:57:34,22:34:1224:22:788:-53.3776,0,-92.1922	1/1:43:0,43:0:0:43:1535:-137.123,-12.9443,0	0/1:2:1,1:1:36:1:36:-2.97671,0,-2.99621	1/1:85:0,85:0:0:85:3041:-270.362,-25.5876,0	0/1:47:27,20:27:964:20:720:-50.0777,0,-72.3538	0/1:8:5,3:5:180:3:108:-7.61231,0,-14.0738	0/1:73:21,52:21:752:52:1867:-145.077,0,-44.7339	1/1:36:0,36:0:0:36:1277:-114.614,-10.8371,0	0/1:9:8,1:8:288:1:36:-0.869497,0,-23.083	1/1:10:0,10:0:0:10:360:-31.6583,-3.0103,0	0/1:58:26,32:26:936:32:1148:-85.3954,0,-66.6628	1/1:43:0,43:0:0:43:1536:-137.346,-12.9443,0	.:.:.:.:.:.:.:.	1/1:136:0,136:0:0:136:4873:-434.313,-40.9401,0	1/1:107:1,106:1:36:106:3792:-336.089,-28.6314,0	0/1:39:19,20:19:676:20:720:-53.0247,0,-48.8601	0/1:73:31,42:31:1116:42:1493:-111.993,0,-76.9639	1/1:135:1,134:1:36:134:4797:-425.568,-37.0603,0	1/1:107:2,105:2:72:105:3750:-328.28,-25.4106,0	1/1:11:0,11:0:0:11:396:-35.7877,-3.31133,0	1/1:37:0,37:0:0:37:1324:-117.53,-11.1381,0	1/1:24:0,24:0:0:24:860:-77.309,-7.22472,0	0/1:11:4,7:4:144:7:252:-19.5928,0,-9.87668	1/1:47:0,47:0:0:47:1646:-147.169,-14.1484,0	0/1:74:50,24:50:1781:24:860:-55.0328,0,-137.302	1/1:74:0,74:0:0:74:2664:-237.873,-22.2762,0	1/1:117:0,117:0:0:117:4170:-371.928,-35.2205,0	0/1:87:47,40:47:1676:40:1440:-103.004,0,-122.826	1/1:47:1,46:1:36:46:1629:-142.316,-10.5501,0	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	1/1:57:0,57:0:0:57:2033:-181.855,-17.1587,0	1/1:84:0,84:0:0:84:3001:-268.451,-25.2865,0	1/1:116:1,115:1:36:115:4090:-361.207,-31.3212,0	0/1:31:20,11:20:720:11:387:-25.0856,0,-55.4614	1/1:33:0,32:0:0:32:1146:-102.387,-9.63296,0	0/1:20:14,6:14:504:6:216:-13.6626,0,-39.176	0/1:70:37,33:37:1320:33:1188:-85.5065,0,-97.234	0/1:11:5,6:5:180:6:216:-16.3022,0,-12.9527	1/1:26:0,26:0:0:26:932:-83.7509,-7.82678,0	1/1:38:0,38:0:0:38:1368:-122.33,-11.4391,0	0/1:8:3,5:3:108:5:176:-13.6977,0,-6.90513	0/1:29:12,17:12:428:17:608:-46.0323,0,-29.9623	0/1:32:21,11:21:752:11:396:-26.1547,0,-56.9189	1/1:82:0,82:0:0:82:2944:-262.523,-24.6845,0	1/1:50:0,50:0:0:50:1789:-159.48,-15.0515,0
chr06	35778751	.	TG	TT	93297.2	PASS	AB=0.450209;ABP=69.8277;AC=143;AF=0.760638;AN=188;AO=4274;CIGAR=1M1X;DP=6009;DPB=6009;DPRA=0;EPP=8115.81;EPPR=3647.07;GTI=2;LEN=1;MEANALT=1.20213;MQM=51.1551;MQMR=59.8754;NS=94;NUMALT=1;ODDS=0.144796;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153046;QR=59638;RO=1710;RPL=139;RPP=8115.81;RPPR=3647.07;RPR=4135;RUN=1;SAF=0;SAP=9283.88;SAR=4274;SRF=0;SRP=3716.23;SRR=1710;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:14,5:14:486:5:180:-10.7132,0,-38.3405	0/1:101:52,49:52:1768:49:1749:-126.259,0,-128.989	0/1:83:39,44:39:1367:44:1580:-116.557,0,-98.3365	1/1:92:0,91:0:0:91:3261:-291.986,-27.3937,0	1/1:50:1,48:1:36:48:1716:-150.061,-11.4994,0	1/1:33:0,33:0:0:33:1184:-104.761,-9.93399,0	1/1:123:0,121:0:0:121:4338:-387.003,-36.4246,0	0/1:84:29,55:29:1023:55:1959:-149.613,0,-67.0935	0/1:54:21,30:21:743:30:1080:-81.1893,0,-51.5158	0/1:53:25,28:25:887:28:1008:-74.7046,0,-64.1932	0/1:73:38,35:38:1321:35:1245:-89.8686,0,-97.212	1/1:83:0,83:0:0:83:2957:-264.17,-24.9855,0	1/1:71:0,71:0:0:71:2543:-227.328,-21.3731,0	0/1:89:41,48:41:1455:48:1724:-127.765,0,-104.454	0/1:63:34,28:34:1170:28:1008:-71.4265,0,-86.5935	1/1:63:0,63:0:0:63:2264:-202.479,-18.9649,0	1/1:62:0,62:0:0:62:2213:-197.484,-18.6639,0	1/1:72:0,72:0:0:72:2558:-228.481,-21.6742,0	0/1:64:36,28:36:1227:28:1008:-70.7918,0,-91.4528	0/1:86:48,38:48:1628:38:1349:-95.4219,0,-120.91	0/1:97:48,49:48:1698:49:1756:-126.912,0,-123.907	1/1:20:0,20:0:0:20:720:-64.576,-6.0206,0	0/1:67:36,31:36:1236:31:1116:-80.4044,0,-91.3666	1/1:54:4,50:4:144:50:1800:-148.375,-2.942,0	0/1:31:17,12:17:583:12:432:-30.016,0,-43.7164	1/1:132:1,129:1:34:129:4632:-412.144,-36.0795,0	0/1:116:68,48:68:2372:48:1705:-118.1,0,-178.069	0/1:46:31,15:31:1091:15:536:-34.3769,0,-84.6505	0/1:67:44,23:44:1516:23:824:-54.1347,0,-116.558	0/1:91:46,45:46:1604:45:1612:-117.075,0,-117.251	0/1:88:26,62:26:919:62:2223:-173.022,0,-56.5352	1/1:5:0,5:0:0:5:180:-16.5003,-1.50515,0	1/1:13:0,13:0:0:13:464:-41.507,-3.91339,0	1/1:3:0,3:0:0:3:108:-10.0205,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.474,-1.50515,0	1/1:4:0,4:0:0:4:144:-12.9338,-1.20412,0	0/1:247:145,101:145:5104:101:3625:-250.796,0,-385.095	1/1:96:1,94:1:36:94:3365:-297.963,-25.2895,0	0/1:103:55,48:55:1903:48:1724:-122.496,0,-140.534	0/1:3:1,2:1:36:2:72:-5.91123,0,-2.69518	0/1:45:21,24:21:745:24:849:-62.4943,0,-53.8271	1/1:30:0,30:0:0:30:1076:-96.816,-9.0309,0	0/1:72:43,29:43:1514:29:1044:-71.2609,0,-114.863	0/1:95:67,28:67:2374:28:1008:-61.9742,0,-185.319	1/1:52:0,52:0:0:52:1872:-167.851,-15.6536,0	1/1:66:0,66:0:0:66:2346:-210.932,-19.868,0	0/1:68:26,40:26:932:40:1432:-107.691,0,-63.9684	1/1:86:0,86:0:0:86:3076:-275.607,-25.8886,0	1/1:41:2,39:2:61:39:1404:-120.166,-6.549,0	0/1:49:31,18:31:1077:18:648:-43.6377,0,-82.4841	1/1:100:0,100:0:0:100:3596:-322.93,-30.103,0	1/1:1:0,1:0:0:1:36:-3.59142,-0.30103,0	1/1:57:0,57:0:0:57:2048:-182.515,-17.1587,0	0/1:24:14,10:14:472:10:360:-25.4858,0,-35.5747	0/1:8:4,4:4:139:4:144:-10.6453,0,-10.4435	0/1:57:25,32:25:863:32:1148:-86.0871,0,-60.823	1/1:32:0,32:0:0:32:1148:-103.128,-9.63296,0	0/1:9:6,3:6:205:3:108:-7.34965,0,-16.0744	1/1:13:0,13:0:0:13:453:-41.0591,-3.91339,0	0/1:69:44,25:44:1563:25:900:-60.1571,0,-120.175	1/1:122:0,120:0:0:120:4269:-382.494,-36.1236,0	0/1:3:1,2:1:36:2:72:-5.92061,0,-2.69518	1/1:70:1,69:1:36:69:2480:-219.518,-17.9485,0	1/1:106:2,104:2:72:104:3698:-323.913,-25.0725,0	0/1:55:31,24:31:1075:24:860:-59.7751,0,-80.4974	0/1:36:21,15:21:743:15:540:-38.008,0,-56.356	1/1:102:0,102:0:0:102:3633:-325.049,-30.7051,0	1/1:89:0,89:0:0:89:3185:-285.719,-26.7917,0	1/1:20:0,20:0:0:20:720:-64.7085,-6.0206,0	1/1:63:0,63:0:0:63:2268:-202.958,-18.9649,0	1/1:73:0,73:0:0:73:2620:-234.893,-21.9752,0	0/1:19:15,4:15:504:4:144:-7.56869,0,-39.9589	1/1:44:1,43:1:36:43:1540:-133.829,-9.64705,0	0/1:46:19,27:19:669:27:972:-73.3717,0,-46.6876	1/1:85:0,85:0:0:85:3037:-272.15,-25.5876,0	1/1:66:0,66:0:0:66:2353:-211.466,-19.868,0	0/1:49:30,19:30:1036:19:669:-45.2533,0,-78.7935	1/1:52:0,52:0:0:52:1864:-166.335,-15.6536,0	1/1:5:0,5:0:0:5:180:-16.4623,-1.50515,0	1/1:54:3,51:3:103:51:1828:-154.579,-6.64602,0	1/1:51:0,51:0:0:51:1813:-161.865,-15.3525,0	1/1:127:0,126:0:0:126:4528:-405.17,-37.9298,0	0/1:93:50,43:50:1732:43:1529:-109.342,0,-128.163	1/1:56:0,54:0:0:54:1929:-172.448,-16.2556,0	0/1:93:48,43:48:1700:43:1548:-111.298,0,-125.532	0/1:187:101,85:101:3546:85:3048:-217.377,0,-263.138	0/1:40:24,16:24:840:16:576:-39.7711,0,-63.8734	1/1:75:0,75:0:0:75:2692:-239.791,-22.5773,0	1/1:62:1,61:1:36:61:2196:-192.629,-15.0656,0	0/1:61:45,16:45:1539:16:561:-31.8687,0,-120.432	0/1:102:56,45:56:1981:45:1620:-114.785,0,-147.788	0/1:98:77,21:77:2622:21:752:-38.013,0,-206.722	1/1:28:0,28:0:0:28:1004:-90.5201,-8.42884,0	1/1:97:0,97:0:0:97:3480:-311.929,-29.1999,0
chr06	35778780	.	GG	TC,GC	124224	PASS	AB=0.44644,0.549314;ABP=79.3054,67.6893;AC=143,45;AF=0.760638,0.239362;AN=188;AO=4194,1695;CIGAR=2X,1M1X;DP=5907;DPB=5907.5;DPRA=0,1.14585;EPP=9110.17,3683.66;EPPR=0;GTI=3;LEN=2,1;MEANALT=1.67021,2.15686;MQM=50.8071,59.8891;MQMR=0;NS=94;NUMALT=2;ODDS=0.193013;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=148814,60524;QR=0;RO=0;RPL=4194,1695;RPP=9110.17,3683.66;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=9110.17,3683.66;SAR=4194,1695;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:19:0,5,14:0:0:5,14:180,485:-54.3277,-39.7544,-38.2492,-14.9276,0,-10.7132	1/2:100:0,47,52:0:0:47,52:1667,1841:-284.916,-150.032,-135.884,-134.955,0,-119.301	1/2:83:0,44,39:0:0:44,39:1560,1404:-241.13,-114.915,-101.67,-126.571,0,-114.831	1/1:93:0,93,0:0:0:93,0:3314,0:-296.832,-27.9958,0,-296.832,-27.9958,-296.832	1/1:49:0,48,1:0:0:48,1:1705,36:-152.25,-14.4494,0,-149.313,-11.1522,-149.012	1/1:32:0,32,0:0:0:32,0:1116,0:-98.6849,-9.63296,0,-98.6849,-9.63296,-98.6849	1/1:123:0,123,0:0:0:123,0:4309,0:-384.539,-37.0267,0,-384.539,-37.0267,-384.539	1/2:80:0,51,29:0:0:51,29:1792,1040:-229.674,-85.1836,-69.8311,-144.845,0,-136.115	1/2:53:0,32,21:0:0:32,21:1115,756:-151.19,-62.0456,-52.4126,-89.4973,0,-83.1757	1/2:53:0,28,25:0:0:28,25:989,881:-152.309,-72.0801,-63.6513,-80.5808,0,-73.0551	1/2:74:0,36,38:0:0:36,38:1294,1368:-217.026,-111.982,-101.145,-105.403,0,-93.9643	1/1:83:0,83,0:0:0:83,0:2917,0:-260.55,-24.9855,0,-260.55,-24.9855,-260.55	1/1:68:0,68,0:0:0:68,0:2415,0:-216.167,-20.47,0,-216.167,-20.47,-216.167	1/2:89:0,48,41:0:0:48,41:1709,1461:-257.868,-119.442,-104.992,-138.781,0,-126.439	1/2:62:0,27,33:0:0:27,33:968,1176:-174.418,-95.8706,-87.7428,-78.5601,0,-68.6262	1/1:61:0,61,0:0:0:61,0:2186,0:-195.476,-18.3628,0,-195.476,-18.3628,-195.476	1/1:62:0,62,0:0:0:62,0:2224,0:-198.302,-18.6639,0,-198.302,-18.6639,-198.302	1/1:71:0,71,0:0:0:71,0:2514,0:-223.654,-21.3731,0,-223.654,-21.3731,-223.654	1/2:63:0,27,36:0:0:27,36:970,1296:-184.277,-106.099,-97.9714,-78.5352,0,-67.6981	1/2:86:0,37,49:0:0:37,49:1317,1760:-250.865,-143.933,-132.795,-107.289,0,-92.5381	1/2:95:0,48,47:0:0:48,47:1696,1684:-274.061,-137.699,-123.249,-136.716,0,-122.568	1/1:20:0,20,0:0:0:20,0:706,0:-63.3998,-6.0206,0,-63.3998,-6.0206,-63.3998	1/2:66:0,29,36:0:0:29,36:1040,1296:-190.393,-105.742,-97.0126,-84.6499,0,-73.8129	1/1:52:0,48,4:0:0:48,4:1692,144:-151.623,-14.4494,0,-139.873,-2.33994,-138.669	1/2:31:0,12,19:0:0:12,19:422,676:-89.4087,-55.1775,-51.5652,-34.583,0,-28.8634	1/1:128:0,128,0:0:0:128,0:4575,0:-410.449,-38.5318,0,-410.449,-38.5318,-410.449	1/2:117:0,49,68:0:0:49,68:1739,2440:-339.612,-199.34,-184.59,-140.626,0,-120.156	1/2:43:0,13,29:0:0:13,29:458,1029:-120.777,-83.8316,-79.9182,-36.937,0,-28.2071	1/2:64:0,18,43:0:0:18,43:638,1544:-177.762,-125.949,-120.531,-51.8088,0,-38.8645	1/2:88:0,43,45:0:0:43,45:1519,1605:-254.224,-131.192,-118.247,-123.386,0,-109.84	1/2:88:0,59,25:0:0:59,25:2094,885:-241.809,-72.0824,-54.3216,-169.722,0,-162.196	1/1:4:0,4,0:0:0:4,0:144,0:-13.27,-1.20412,0,-13.27,-1.20412,-13.27	1/1:14:0,14,0:0:0:14,0:481,0:-43.131,-4.21442,0,-43.131,-4.21442,-43.131	1/1:3:0,3,0:0:0:3,0:106,0:-9.84108,-0.90309,0,-9.84108,-0.90309,-9.84108	1/1:4:0,4,0:0:0:4,0:144,0:-13.2414,-1.20412,0,-13.2414,-1.20412,-13.2414	1/1:4:0,4,0:0:0:4,0:144,0:-12.9338,-1.20412,0,-12.9338,-1.20412,-12.9338	1/2:242:0,99,143:0:0:99,143:3534,5128:-705.282,-418.588,-388.786,-287.051,0,-244.004	1/1:96:0,96,0:0:0:96,0:3398,0:-303.643,-28.8989,0,-303.643,-28.8989,-303.643	1/2:102:0,47,55:0:0:47,55:1644,1972:-293.412,-161.196,-147.048,-132.567,0,-116.011	1/2:3:0,2,1:0:0:2,1:70,36:-8.96801,-3.29724,-2.69518,-6.02695,0,-5.72592	1/2:46:0,25,21:0:0:25,21:880,741:-131.648,-60.69,-53.1642,-71.3087,0,-64.9871	1/1:31:0,31,0:0:0:31,0:1102,0:-99.1523,-9.33193,0,-99.1523,-9.33193,-99.1523	1/2:70:0,28,42:0:0:28,42:986,1497:-201.873,-122.357,-113.928,-79.8683,0,-67.2251	1/2:93:0,27,66:0:0:27,66:972,2368:-272.351,-193.51,-185.382,-79.1996,0,-59.3316	1/1:51:0,51,0:0:0:51,0:1819,0:-163.082,-15.3525,0,-163.082,-15.3525,-163.082	1/1:61:0,60,0:0:0:60,0:2131,0:-191.224,-18.0618,0,-191.224,-18.0618,-191.224	1/2:68:0,41,27:0:0:41,27:1438,972:-195.438,-79.6596,-67.3174,-116.133,0,-108.005	1/1:83:0,83,0:0:0:83,0:2936,0:-263.625,-24.9855,0,-263.625,-24.9855,-263.625	1/1:41:0,39,2:0:0:39,2:1398,72:-125.067,-11.7402,0,-119.192,-5.50551,-118.589	1/2:50:0,19,31:0:0:19,31:672,1112:-145.38,-91.0594,-85.3398,-54.675,0,-45.343	1/1:99:0,99,0:0:0:99,0:3488,0:-313.343,-29.802,0,-313.343,-29.802,-313.343	1/1:1:0,1,0:0:0:1,0:36,0:-3.59142,-0.30103,0,-3.59142,-0.30103,-3.59142	1/1:58:0,58,0:0:0:58,0:2060,0:-184.064,-17.4597,0,-184.064,-17.4597,-184.064	1/2:23:0,10,13:0:0:10,13:345,468:-66.5359,-38.5453,-35.535,-28.3418,0,-24.4284	1/2:8:0,4,4:0:0:4,4:144,129:-22.2353,-10.7235,-9.51937,-11.8494,0,-10.6453	1/2:56:0,31,25:0:0:31,25:1112,866:-161.041,-70.7256,-61.3937,-90.6663,0,-83.1405	1/1:32:0,32,0:0:0:32,0:1132,0:-101.697,-9.63296,0,-101.697,-9.63296,-101.697	1/2:8:0,3,5:0:0:3,5:108,180: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chr06	35797615	.	CGCG	CGCC,TGCC	193087	PASS	AB=0.485777,0.507877;ABP=11.0405,5.47352;AC=140,46;AF=0.752688,0.247312;AN=186;AO=6823,2338;CIGAR=3M1X,1X2M1X;DP=9223;DPB=9223.25;DPRA=0,1.41527;EPP=14801.6,5071.23;EPPR=20.3821;GTI=1;LEN=1,4;MEANALT=2.12903,2.56897;MQM=59.9821,59.9376;MQMR=56;NS=93;NUMALT=2;ODDS=0.330987;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=240877,81662;QR=242;RO=8;RPL=6821,2338;RPP=14801.6,5079.91;RPPR=3.0103;RPR=2,0;RUN=1,1;SAF=6819,2337;SAP=14784.2,5071.23;SAR=4,1;SRF=4;SRP=3.0103;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:23:0,12,11:0:0:12,11:432,387:-67.1081,-31.8549,-28.2425,-35.6088,0,-32.2975	1/2:202:0,74,127:0:0:74,127:2592,4427:-571.068,-360.167,-337.891,-211.038,0,-172.808	1/2:101:0,41,60:0:0:41,60:1446,2099:-288.854,-171.114,-158.771,-118.092,0,-100.03	1/1:283:0,280,2:0:0:280,2:9847,70:-885.835,-84.2884,0,-880.139,-78.5996,-879.537	1/1:78:0,77,1:0:0:77,1:2708,36:-243.602,-23.1793,0,-240.664,-19.8821,-240.363	1/1:87:0,86,0:0:0:86,0:3055,0:-274.926,-25.8886,0,-274.926,-25.8886,-274.926	1/1:114:0,112,0:0:0:112,0:3967,0:-356.958,-33.7154,0,-356.958,-33.7154,-356.958	1/2:214:0,124,87:0:0:124,87:4395,3021:-603.687,-245.641,-208.313,-358.107,0,-331.918	1/2:121:0,61,59:0:0:61,59:2136,2013:-337.047,-163.268,-144.905,-173.833,0,-156.072	1/2:121:0,54,67:0:0:54,67:1919,2343:-347.336,-190.958,-174.702,-156.731,0,-136.562	1/2:58:0,30,28:0:0:30,28:1063,1003:-168.751,-82.1573,-73.1264,-86.9499,0,-78.5211	1/1:97:0,95,0:0:0:95,0:3371,0:-303.248,-28.5979,0,-303.248,-28.5979,-303.248	1/1:88:0,88,0:0:0:88,0:3055,0:-275.178,-26.4906,0,-275.178,-26.4906,-275.178	1/2:78:0,30,48:0:0:30,48:1067,1663:-222.464,-135.506,-126.475,-87.3103,0,-72.8609	1/2:70:0,31,39:0:0:31,39:1075,1378:-199.951,-112.578,-103.246,-87.7233,0,-75.9831	1/1:60:0,60,0:0:0:60,0:2079,0:-187.376,-18.0618,0,-187.376,-18.0618,-187.376	1/1:116:0,116,0:0:0:116,0:4104,0:-369.544,-34.9195,0,-369.544,-34.9195,-369.544	1/1:92:0,92,0:0:0:92,0:3248,0:-292.524,-27.6948,0,-292.524,-27.6948,-292.524	1/2:49:0,24,24:0:0:24,24:847,834:-136.892,-67.9158,-60.6911,-69.0891,0,-61.8644	1/2:216:0,102,113:0:0:102,113:3613,3940:-614.879,-320.56,-289.855,-294.448,0,-260.432	1/2:150:0,62,86:0:0:62,86:2202,2983:-421.939,-242.509,-223.845,-179.474,0,-153.585	1/1:92:0,91,1:0:0:91,1:3214,36:-289.122,-27.3937,0,-286.184,-24.0965,-285.883	1/2:40:0,13,27:0:0:13,27:464,946:-115.155,-77.3259,-73.4125,-38.1841,0,-30.0563	1/2:51:0,46,5:0:0:46,5:1606,176:-145.304,-14.678,-0.83061,-130.978,0,-129.472	1/2:56:0,14,40:0:0:14,40:500,1390:-153.766,-112.999,-108.785,-40.7666,0,-28.7254	1/1:339:2,332,1:2:53:332,1:11778,29:-1054.84,-95.7837,0,-1053.14,-97.6314,-1057	1/2:181:0,86,94:0:0:86,94:3033,3261:-512.017,-265.057,-239.169,-246.95,0,-218.653	1/2:52:0,27,25:0:0:27,25:936,871:-147.254,-71.1787,-63.0509,-76.4229,0,-68.8971	1/2:202:1,96,104:1:27:96,104:3435,3631:-573.131,-293.321,-266.55,-278.094,0,-248.914	1/2:184:0,94,88:0:0:94,88:3256,3056:-513.113,-248.494,-220.197,-264.679,0,-238.188	1/2:83:0,43,40:0:0:43,40:1518,1401:-237.958,-114.342,-101.398,-123.967,0,-111.926	1/1:8:0,8,0:0:0:8,0:272,0:-24.8089,-2.40824,0,-24.8089,-2.40824,-24.8089	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:8:0,8,0:0:0:8,0:279,0:-25.4475,-2.40824,0,-25.4475,-2.40824,-25.4475	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:271:1,122,145:1:36:122,145:4314,5114:-764.56,-413.504,-379.716,-348.456,0,-307.744	1/1:130:0,129,1:0:0:129,1:4579,36:-411.916,-38.8329,0,-408.978,-35.5356,-408.677	1/2:48:1,24,23:1:36:24,23:842,798:-130.033,-61.9169,-57.6301,-65.4688,0,-61.4829	.:.:.:.:.:.:.:.	1/2:198:0,104,94:0:0:104,94:3700,3280:-568.668,-267.125,-235.818,-301.895,0,-273.598	1/1:42:0,42,0:0:0:42,0:1479,0:-133.402,-12.6433,0,-133.402,-12.6433,-133.402	1/2:87:0,44,43:0:0:44,43:1563,1531:-252.499,-125.139,-111.894,-127.716,0,-114.771	1/2:59:0,32,27:0:0:32,27:1120,946:-168.446,-77.3242,-67.6913,-91.4719,0,-83.3441	1/1:74:0,73,0:0:0:73,0:2549,0:-229.271,-21.9752,0,-229.271,-21.9752,-229.271	1/1:77:0,77,0:0:0:77,0:2704,0:-243.604,-23.1793,0,-243.604,-23.1793,-243.604	1/2:159:0,85,73:0:0:85,73:3023,2542:-453.168,-206.805,-181.218,-246.463,0,-224.487	1/1:98:0,96,1:0:0:96,1:3436,36:-309.113,-28.8989,0,-306.176,-25.9415,-305.875	1/1:92:0,91,0:0:0:91,0:3220,0:-289.663,-27.3937,0,-289.663,-27.3937,-289.663	1/2:196:0,102,94:0:0:102,94:3608,3302:-562.973,-269.106,-238.401,-294.22,0,-265.923	1/1:117:0,117,0:0:0:117,0:4106,0:-369.672,-35.2205,0,-369.672,-35.2205,-369.672	1/2:10:0,5,5:0:0:5,5:180,179:-29.6433,-14.9552,-13.4501,-15.0469,0,-13.5418	1/1:88:0,88,0:0:0:88,0:3110,0:-280.126,-26.4906,0,-280.126,-26.4906,-280.126	1/2:35:1,20,14:1:25:20,14:697,488:-94.2219,-37.8413,-33.7582,-54.8365,0,-52.5615	1/2:22:0,10,12:0:0:10,12:351,424:-63.4485,-34.884,-31.8737,-28.9164,0,-25.304	1/2:126:0,67,58:0:0:67,58:2387,2015:-358.428,-163.861,-143.692,-194.617,0,-177.158	1/1:47:0,47,0:0:0:47,0:1664,0:-150.047,-1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chr06	35899845	.	G	C	137097	PASS	AB=0.649417;ABP=568.861;AC=141;AF=0.766304;AN=184;AO=6205;CIGAR=1X;DP=7237;DPB=7237;DPRA=0;EPP=13451;EPPR=2196.27;GTI=7;LEN=1;MEANALT=1.1087;MQM=59.9936;MQMR=60;NS=92;NUMALT=1;ODDS=1.94671;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219999;QR=35951;RO=1022;RPL=111;RPP=12530.1;RPPR=1977.51;RPR=6094;RUN=1;SAF=108;SAP=12555.2;SAR=6097;SRF=26;SRP=2002.17;SRR=996;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:32:10,22:10:351:22:792:-61.9727,0,-22.2937	0/1:106:34,72:34:1208:72:2553:-198.11,0,-77.1169	1/1:249:0,249:0:0:249:8827:-794.42,-74.9565,0	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	1/1:122:0,122:0:0:122:4317:-388.707,-36.7257,0	0/1:89:18,70:18:625:70:2440:-193.003,0,-29.7227	0/1:48:13,35:13:464:35:1247:-98.0846,0,-27.6481	0/1:85:36,49:36:1288:49:1748:-132.017,0,-90.636	0/1:32:8,24:8:284:24:846:-66.8248,0,-16.2704	1/1:88:0,88:0:0:88:3104:-279.588,-26.4906,0	1/1:68:0,68:0:0:68:2385:-214.906,-20.47,0	0/1:43:12,31:12:415:31:1085:-85.0127,0,-24.736	0/1:47:19,28:19:659:28:978:-74.1803,0,-45.4839	1/1:62:0,62:0:0:62:2181:-196.555,-18.6639,0	1/1:40:0,40:0:0:40:1407:-126.926,-12.0412,0	1/1:34:0,34:0:0:34:1197:-108.033,-10.235,0	0/1:17:4,13:4:125:13:451:-35.8023,0,-6.44111	0/1:139:21,118:21:752:118:4185:-334.988,0,-26.1631	0/1:178:57,121:57:2010:121:4290:-332.694,0,-127.589	1/1:55:0,55:0:0:55:1934:-174.333,-16.5567,0	0/1:61:20,40:20:712:40:1440:-111.476,0,-45.9852	0/1:42:4,38:4:144:38:1348:-108.977,0,-0.670357	0/1:36:5,31:5:167:31:1112:-89.5543,0,-4.52133	1/1:288:0,288:0:0:288:10177:-915.863,-86.6966,0	0/1:158:73,85:73:2611:85:3022:-224.648,0,-187.675	0/1:24:10,14:10:343:14:496:-37.7495,0,-23.9758	0/1:213:46,167:46:1626:167:5956:-472.03,0,-82.508	0/1:107:38,69:38:1323:69:2444:-188.003,0,-87.1558	0/1:77:28,49:28:1004:49:1739:-133.614,0,-67.4966	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	0/1:163:80,83:80:2790:83:2937:-215.497,0,-202.271	1/1:85:0,84:0:0:84:2999:-269.782,-25.2865,0	0/1:39:19,20:19:668:20:720:-53.3886,0,-48.7055	.:.:.:.:.:.:.:.	0/1:135:49,86:49:1747:86:3059:-234.901,0,-116.874	1/1:31:0,31:0:0:31:1102:-99.4898,-9.33193,0	0/1:54:10,44:10:360:44:1568:-125.156,0,-16.4887	0/1:48:18,30:18:636:30:1056:-80.9003,0,-43.1186	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:81:0,80:0:0:80:2822:-253.859,-24.0824,0	0/1:60:12,48:12:428:48:1698:-135.043,0,-20.797	1/1:167:0,167:0:0:167:5873:-528.685,-50.272,0	1/1:83:0,83:0:0:83:2954:-266.093,-24.9855,0	0/1:110:45,64:45:1588:64:2277:-172.018,0,-110.036	1/1:130:1,128:1:36:128:4531:-404.357,-35.5944,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:85:0,85:0:0:85:3012:-271.311,-25.5876,0	0/1:59:11,48:11:396:48:1709:-136.333,0,-18.222	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:129:46,82:46:1600:82:2913:-223.511,0,-105.392	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	0/1:25:3,22:3:95:22:779:-62.9063,0,-1.33846	1/1:59:0,59:0:0:59:2091:-188.46,-17.7608,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:223:0,223:0:0:223:7937:-714.358,-67.1297,0	1/1:210:0,210:0:0:210:7452:-670.724,-63.2163,0	0/1:34:11,23:11:381:23:815:-63.4357,0,-24.3856	0/1:53:19,34:19:669:34:1192:-91.6286,0,-44.5794	1/1:179:3,175:3:104:175:6249:-552.8,-44.237,0	1/1:148:0,148:0:0:148:5267:-474.168,-44.5524,0	1/1:25:0,25:0:0:25:884:-79.8784,-7.52575,0	1/1:65:0,65:0:0:65:2270:-204.56,-19.567,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:16:5,11:5:165:11:387:-30.3495,0,-10.3571	1/1:123:0,123:0:0:123:4379:-394.283,-37.0267,0	0/1:77:49,28:49:1716:28:957:-63.0279,0,-131.543	1/1:125:0,125:0:0:125:4416:-397.612,-37.6288,0	1/1:209:0,209:0:0:209:7474:-672.703,-62.9153,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:125:0,125:0:0:125:4457:-401.301,-37.6288,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:90:0,90:0:0:90:3211:-289.211,-27.0927,0	1/1:145:0,144:0:0:144:5074:-456.446,-43.3483,0	1/1:202:0,202:0:0:202:7184:-646.619,-60.8081,0	0/1:37:16,21:16:535:21:748:-56.5072,0,-37.3274	1/1:59:0,59:0:0:59:2088:-188.188,-17.7608,0	0/1:52:26,26:26:908:26:919:-67.3726,0,-66.3789	0/1:89:41,48:41:1421:48:1667:-123.522,0,-101.392	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:72:0,72:0:0:72:2535:-228.4,-21.6742,0	1/1:70:0,70:0:0:70:2456:-221.294,-21.0721,0	0/1:21:5,16:5:172:16:572:-45.4918,0,-9.49634	0/1:66:30,36:30:1045:36:1274:-95.0935,0,-74.4898	0/1:76:45,30:45:1588:30:1058:-72.594,0,-120.273	1/1:173:0,173:0:0:173:6188:-557.016,-52.0782,0	1/1:101:0,101:0:0:101:3563:-320.879,-30.404,0
chr06	35899893	.	A	G	13499.8	PASS	AB=0.344863;ABP=607.364;AC=43;AF=0.233696;AN=184;AO=1004;CIGAR=1X;DP=7156;DPB=7156;DPRA=0.881488;EPP=2183.17;EPPR=13357.6;GTI=9;LEN=1;MEANALT=1.02083;MQM=60;MQMR=59.9932;NS=92;NUMALT=1;ODDS=0.206039;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35955;QR=220502;RO=6150;RPL=1004;RPP=2183.17;RPPR=13357.6;RPR=0;RUN=1;SAF=0;SAP=2183.17;SAR=1004;SRF=0;SRP=13357.6;SRR=6150;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:30:21,9:21:756:9:320:-20.1115,0,-59.3363	0/1:103:71,32:71:2540:32:1144:-72.2634,0,-197.844	0/0:248:248,0:248:8904:0:0:0,-74.6554,-801.337	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/1:92:74,18:74:2656:18:644:-30.5958,0,-211.591	0/1:44:33,11:33:1188:11:388:-22.012,0,-93.9833	0/1:88:50,38:50:1796:38:1353:-95.5778,0,-135.432	0/1:32:24,8:24:864:8:288:-16.6344,0,-68.4496	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/1:44:31,13:31:1116:13:468:-29.2143,0,-87.5064	0/1:48:28,20:28:1008:20:716:-50.3183,0,-76.5869	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:15:11,4:11:396:4:140:-8.42913,0,-31.4673	0/1:140:121,19:121:4336:19:676:-19.0238,0,-348.271	0/1:178:121,57:121:4336:57:2044:-130.648,0,-336.832	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:57:40,17:40:1436:17:608:-37.8933,0,-112.379	0/1:40:36,4:36:1288:4:144:-1.27242,0,-104.182	0/1:36:31,5:31:1108:5:180:-5.71499,0,-89.1939	0/0:275:275,0:275:9841:0:0:0,-82.7832,-885.633	0/1:155:85,70:85:3052:70:2504:-178.953,0,-228.249	0/1:24:14,10:14:500:10:359:-25.4289,0,-38.1115	0/1:214:169,45:169:6072:45:1616:-81.3096,0,-482.159	0/1:103:68,35:68:2436:35:1252:-81.979,0,-188.489	0/1:77:49,28:49:1756:28:1008:-67.857,0,-135.145	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:167:85,82:85:3056:82:2932:-213.843,0,-224.996	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.948	0/1:38:19,19:19:684:19:680:-50.09,0,-50.4512	.:.:.:.:.:.:.:.	0/1:131:83,48:83:2976:48:1724:-116.01,0,-228.637	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:52:43,9:43:1532:9:324:-13.8523,0,-122.52	0/1:50:31,19:31:1116:19:676:-46.1165,0,-85.7002	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.762	0/1:54:46,8:46:1640:8:284:-9.64773,0,-131.633	0/0:162:162,0:162:5808:0:0:0,-48.7669,-522.832	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:108:65,43:65:2340:43:1548:-107.102,0,-178.348	0/0:132:131,1:131:4700:1:36:0,-36.1377,-419.561	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:57:46,11:46:1656:11:392:-18.4613,0,-132.17	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:125:80,45:80:2872:45:1616:-108.101,0,-221.088	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:24:21,3:21:752:3:104:-2.47809,0,-60.7815	0/0:61:60,1:60:2156:1:36:0,-14.7646,-190.709	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:223:223,0:223:7980:0:0:0,-67.1297,-718.223	0/0:212:212,0:212:7592:0:0:0,-63.8184,-683.318	0/1:33:23,10:23:828:10:360:-22.8103,0,-64.9101	0/1:55:34,21:34:1201:21:756:-51.8106,0,-91.837	0/0:174:172,2:172:6161:2:72:0,-45.5425,-547.75	0/0:149:147,2:147:5276:2:72:0,-38.0167,-468.138	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/1:75:28,47:28:1000:47:1688:-129.63,0,-67.1089	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/0:212:212,0:212:7628:0:0:0,-63.8184,-686.551	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:144:143,0:143:5097:0:0:0,-43.0473,-458.515	0/0:198:198,0:198:7080:0:0:0,-59.6039,-637.261	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:54:28,26:28:1008:26:932:-67.9432,0,-74.7807	0/1:90:48,42:48:1720:42:1504:-108.562,0,-127.993	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:21:16,5:16:576:5:176:-9.86339,0,-45.8534	0/1:67:37,30:37:1317:30:1072:-76.6234,0,-98.6608	0/1:76:31,44:31:1100:44:1571:-118.89,0,-76.5185	0/0:173:173,0:173:6220:0:0:0,-52.0782,-559.893	0/0:101:100,1:100:3584:1:36:0,-26.8058,-319.168
chr06	35901442	.	A	G	30147.4	PASS	AB=0.485683;ABP=9.60097;AC=44;AF=0.236559;AN=186;AO=1811;CIGAR=1X;DP=9079;DPB=9079;DPRA=0.917359;EPP=3900.88;EPPR=15733.2;GTI=3;LEN=1;MEANALT=1;MQM=59.9034;MQMR=57.4773;NS=93;NUMALT=1;ODDS=1.849;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64850;QR=259898;RO=7268;RPL=4;RPP=3900.88;RPPR=15733.2;RPR=1807;RUN=1;SAF=1811;SAP=3935.55;SAR=0;SRF=7268;SRP=15785.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:33,16:33:1184:16:576:-37.4245,0,-92.0831	0/1:150:61,89:61:2180:89:3184:-241.63,0,-151.191	0/1:100:51,49:51:1817:49:1751:-127.77,0,-133.661	0/0:202:202,0:202:7256:0:0:0,-60.8081,-652.62	0/0:88:88,0:88:3156:0:0:0,-26.4906,-283.918	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.417	0/0:156:156,0:156:5581:0:0:0,-46.9607,-502.151	0/1:147:82,65:82:2940:65:2336:-166.21,0,-220.134	0/1:92:53,39:53:1908:39:1396:-98.2443,0,-144.135	0/1:76:59,17:59:2112:17:612:-32.5352,0,-167.307	0/1:19:9,10:9:320:10:360:-27.0247,0,-23.3553	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.127	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.793	0/1:31:11,20:11:396:20:720:-55.7968,0,-25.9343	0/1:40:24,16:24:864:16:572:-39.7437,0,-65.9666	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.014	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0036	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.106	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8086	0/1:194:118,76:118:4240:76:2728:-187.36,0,-322.992	0/1:148:85,63:85:3021:63:2260:-159.11,0,-226.827	0/0:159:159,0:159:5677:0:0:0,-47.8638,-509.578	0/1:98:48,50:48:1713:50:1792:-132.059,0,-124.814	0/0:142:138,4:138:4932:4:144:0,-29.4326,-429.907	0/1:118:51,67:51:1832:67:2404:-181.095,0,-129.493	0/0:446:446,0:446:15951:0:0:0,-134.259,-1430.01	0/1:237:123,114:123:4381:114:4078:-295.847,0,-322.342	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2271	0/1:378:189,189:189:6669:189:6754:-493.039,0,-485.979	0/1:103:50,53:50:1800:53:1899:-140.181,0,-130.43	0/1:131:60,71:60:2152:71:2520:-187.61,0,-154.429	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4918	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.378	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3104	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.804	0/1:132:67,65:67:2393:65:2331:-170.277,0,-175.474	0/0:335:335,0:335:11947:0:0:0,-100.845,-1073.15	0/1:20:7,13:7:252:13:464:-36.0769,0,-17.0019	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93105	0/1:126:57,69:57:2040:69:2476:-185.164,0,-145.859	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.8109	0/1:186:75,111:75:2672:111:3964:-300.958,0,-184.026	0/1:30:14,16:14:504:16:576:-43.1441,0,-35.9043	0/0:44:44,0:44:1580:0:0:0,-13.2453,-141.854	0/0:113:112,1:112:4008:1:36:0,-30.4181,-356.579	0/1:135:62,73:62:2224:73:2620:-195.408,0,-159.502	0/0:210:209,1:209:7436:1:36:0,-59.618,-664.694	0/0:133:133,0:133:4760:0:0:0,-40.037,-428.321	0/1:112:57,55:57:2033:55:1980:-144.751,0,-149.25	0/0:245:245,0:245:8753:0:0:0,-73.7523,-787.16	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3168	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.294	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.2724	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0012	0/1:134:66,68:66:2364:68:2424:-178.072,0,-172.44	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.77	0/1:14:9,5:9:316:5:176:-11.9706,0,-24.5573	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.0843	0/1:59:29,30:29:1021:30:1072:-79.0317,0,-74.3298	0/0:106:106,0:106:3800:0:0:0,-31.9092,-341.341	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.5503	0/0:217:217,0:217:7756:0:0:0,-65.3235,-696.97	0/0:238:237,1:237:8466:1:36:0,-68.0469,-757.681	0/1:67:55,12:55:1953:12:432:-19.0522,0,-155.594	0/1:111:60,51:60:2122:51:1821:-130.754,0,-157.009	0/0:167:165,2:165:5897:2:72:0,-43.4353,-523.736	0/0:114:110,4:110:3914:4:144:0,-21.0038,-338.883	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.018	0/0:104:104,0:104:3720:0:0:0,-31.3071,-334.865	0/0:59:59,0:59:2124:0:0:0,-17.7608,-190.6	0/1:32:15,17:15:540:17:612:-45.7805,0,-38.6801	0/0:132:132,0:132:4732:0:0:0,-39.736,-424.766	0/1:50:21,29:21:752:29:1040:-78.8629,0,-52.9362	0/0:141:141,0:141:5060:0:0:0,-42.4452,-455.175	0/0:125:125,0:125:4469:0:0:0,-37.6287,-401.974	0/0:161:161,0:161:5777:0:0:0,-48.4658,-519.055	0/0:82:82,0:82:2932:0:0:0,-24.6845,-263.591	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5363	0/0:92:92,0:92:3288:0:0:0,-27.6948,-295.937	0/0:101:101,0:101:3620:0:0:0,-30.404,-325.859	0/0:351:351,0:351:12564:0:0:0,-105.662,-1128.56	0/1:63:28,35:28:1004:35:1252:-94.0175,0,-71.6162	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.372	0/1:40:23,17:23:828:17:608:-43.0099,0,-62.7656	0/1:71:45,26:45:1616:26:936:-63.1854,0,-124.284	0/1:29:10,19:10:360:19:680:-52.7993,0,-24.0053	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.022	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.183	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6308	0/1:43:20,23:20:716:23:820:-61.1777,0,-51.7752	0/1:33:15,18:15:540:18:644:-48.3557,0,-38.9102	0/0:141:141,0:141:5007:0:0:0,-42.4452,-449.926	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.559
chr06	35901598	.	ATTGT	ATTGC,CTTGC	185120	PASS	AB=0.5,0.498945;ABP=3.0103,3.04697;AC=142,44;AF=0.763441,0.236559;AN=186;AO=6945,1903;CIGAR=4M1X,1X3M1X;DP=8862;DPB=8862.2;DPRA=0,1.00557;EPP=15057.8,4135.32;EPPR=9.52472;GTI=1;LEN=1,5;MEANALT=1.64516,2.07843;MQM=49.7437,35.3363;MQMR=60;NS=93;NUMALT=2;ODDS=1.82831;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=248496,67441;QR=107;RO=3;RPL=6942,1903;RPP=15057.8,4135.32;RPPR=9.52472;RPR=3,0;RUN=1,1;SAF=0,0;SAP=15083.9,4135.32;SAR=6945,1903;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:52:0,34,18:0:0:34,18:1212,634:-142.715,-44.8373,-34.6023,-98.2012,0,-92.7826	1/2:131:0,77,53:0:0:77,53:2747,1885:-351.938,-130.777,-107.598,-221.134,0,-205.18	1/2:152:0,71,81:0:0:71,81:2524,2890:-403.382,-200.963,-179.59,-202.75,0,-178.366	1/1:163:0,163,0:0:0:163,0:5822,0:-520.287,-49.0679,0,-520.287,-49.0679,-520.287	1/1:138:0,138,0:0:0:138,0:4935,0:-440.858,-41.5421,0,-440.858,-41.5421,-440.858	1/1:87:0,87,0:0:0:87,0:3120,0:-277.282,-26.1896,0,-277.282,-26.1896,-277.282	1/1:136:0,135,0:0:0:135,0:4840,0:-431.963,-40.6391,0,-431.963,-40.6391,-431.963	1/2:126:0,56,70:0:0:56,70:2003,2466:-333.399,-172.266,-155.409,-161.465,0,-140.393	1/2:66:0,39,27:0:0:39,27:1381,948:-176.872,-65.3367,-53.5965,-111.857,0,-103.729	1/2:66:0,36,30:0:0:36,30:1292,1067:-185.931,-80.9115,-70.0744,-105.363,0,-96.3319	1/2:23:0,14,9:0:0:14,9:504,315:-65.1848,-24.198,-19.9835,-41.3269,0,-38.6176	1/1:33:0,33,0:0:0:33,0:1188,0:-105.892,-9.93399,0,-105.892,-9.93399,-105.892	1/1:43:0,43,0:0:0:43,0:1535,0:-136.905,-12.9443,0,-136.905,-12.9443,-136.905	1/2:47:0,20,27:0:0:20,27:716,934:-125.009,-66.9396,-60.919,-58.4045,0,-50.2767	1/2:36:0,23,13:0:0:23,13:820,463:-100.819,-34.4614,-27.5377,-66.693,0,-62.7796	1/1:18:0,18,0:0:0:18,0:633,0:-56.8822,-5.41854,0,-56.8822,-5.41854,-56.8822	1/1:38:0,38,0:0:0:38,0:1356,0:-120.585,-11.4391,0,-120.585,-11.4391,-120.585	1/1:32:0,32,0:0:0:32,0:1148,0:-102.632,-9.63296,0,-102.632,-9.63296,-102.632	1/2:13:0,4,9:0:0:4,9:144,313:-33.5284,-22.2783,-21.0742,-11.5831,0,-8.87388	1/2:213:0,105,108:0:0:105,108:3780,3856:-597.404,-290.321,-258.713,-307.428,0,-274.916	1/2:140:0,68,72:0:0:68,72:2436,2565:-383.188,-186.002,-165.532,-197.524,0,-175.85	1/1:156:0,156,0:0:0:156,0:5587,0:-500.737,-46.9607,0,-500.737,-46.9607,-500.737	1/2:65:0,30,35:0:0:30,35:1072,1243:-180.793,-94.112,-85.0811,-87.0248,0,-76.4887	1/1:133:0,129,4:0:0:129,4:4632,144:-413.199,-38.8329,0,-402.718,-28.0262,-401.513	1/2:78:0,36,42:0:0:36,42:1283,1486:-212.659,-108.645,-97.8084,-104.352,0,-91.7085	1/1:375:0,374,0:0:0:374,0:13395,0:-1200.2,-112.585,0,-1200.2,-112.585,-1200.2	1/2:231:0,120,111:0:0:120,111:4299,3937:-631.663,-283.594,-247.47,-348.404,0,-314.99	1/2:23:0,15,8:0:0:15,8:540,282:-63.8033,-20.2686,-15.7531,-43.8611,0,-41.4528	1/2:345:0,173,171:0:0:173,171:6183,6090:-969.151,-467.987,-415.909,-501.151,0,-449.675	1/2:105:0,49,56:0:0:49,56:1756,1972:-285.704,-143.314,-128.563,-142.728,0,-125.87	1/2:173:0,84,89:0:0:84,89:3003,3117:-476.91,-233.391,-208.104,-243.86,0,-217.068	1/1:17:0,17,0:0:0:17,0:604,0:-54.4112,-5.11751,0,-54.4112,-5.11751,-54.4112	1/1:12:0,12,0:0:0:12,0:432,0:-38.9977,-3.61236,0,-38.9977,-3.61236,-38.9977	1/1:9:0,9,0:0:0:9,0:324,0:-28.9557,-2.70927,0,-28.9557,-2.70927,-28.9557	1/1:6:0,6,0:0:0:6,0:216,0:-19.6182,-1.80618,0,-19.6182,-1.80618,-19.6182	1/1:9:0,9,0:0:0:9,0:324,0:-29.2479,-2.70927,0,-29.2479,-2.70927,-29.2479	1/2:112:0,61,51:0:0:61,51:2192,1819:-318.9,-140.451,-122.089,-178.796,0,-163.443	1/1:228:0,228,0:0:0:228,0:8167,0:-729.862,-68.6348,0,-729.862,-68.6348,-729.862	1/2:46:0,26,20:0:0:26,20:932,706:-123.468,-48.4319,-40.6051,-75.3597,0,-69.3391	1/2:6:0,4,2:0:0:4,2:144,72:-17.2673,-5.56564,-4.36152,-12.0373,0,-11.4353	1/2:126:0,63,63:0:0:63,63:2264,2263:-348.116,-164.497,-145.532,-183.96,0,-164.995	1/1:20:0,20,0:0:0:20,0:716,0:-64.4428,-6.0206,0,-64.4428,-6.0206,-64.4428	1/2:204:0,97,107:0:0:97,107:3479,3806:-553.168,-272.583,-243.383,-280.921,0,-248.711	1/2:37:0,13,24:0:0:13,24:468,845:-102.05,-63.9982,-60.0848,-38.4001,0,-31.1754	1/1:37:0,37,0:0:0:37,0:1332,0:-119.782,-11.1381,0,-119.782,-11.1381,-119.782	1/1:132:0,132,0:0:0:132,0:4701,0:-422.088,-39.736,0,-422.088,-39.736,-422.088	1/2:101:0,63,38:0:0:63,38:2256,1364:-276.603,-95.5717,-76.6068,-181.359,0,-169.919	1/1:129:1,128,0:1:36:128,0:4563,0:-403.48,-35.2346,0,-403.781,-38.5318,-406.719	1/1:103:1,101,1:1:36:101,1:3607,36:-319.04,-27.454,0,-316.631,-27.7061,-319.267	1/2:144:0,75,69:0:0:75,69:2679,2453:-402.527,-184.853,-162.276,-218.016,0,-197.245	1/1:150:0,150,0:0:0:150,0:5357,0:-480.29,-45.1545,0,-480.29,-45.1545,-480.29	1/2:14:0,5,9:0:0:5,9:180,324:-39.3717,-24.7291,-23.224,-14.9927,0,-12.2834	1/1:156:0,156,0:0:0:156,0:5575,0:-495.856,-46.9607,0,-495.856,-46.9607,-495.856	1/2:26:0,11,15:0:0:11,15:392,537:-73.2593,-41.5154,-38.204,-32.0914,0,-27.5759	1/2:12:0,5,7:0:0:5,7:180,240:-31.0397,-16.4665,-14.9613,-14.9022,0,-12.795	1/2:146:0,69,75:0:0:69,75:2476,2626:-390.233,-189.462,-168.691,-200.75,0,-178.173	1/1:39:0,39,0:0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chr07	19148	.	TCC	GCC,GCT	135882	PASS	AB=0.48263,0.513896;ABP=12.8173,9.2868;AC=139,49;AF=0.739362,0.260638;AN=188;AO=4610,1930;CIGAR=1X2M,1X1M1X;DP=6567;DPB=6567;DPRA=0,1.6472;EPP=10013.5,4193.95;EPPR=7.35324;GTI=1;LEN=1,3;MEANALT=1.85106,2.23214;MQM=59.9419,59.4083;MQMR=60;NS=94;NUMALT=2;ODDS=1.58026;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=163419,66614;QR=67;RO=2;RPL=0,0;RPP=10013.5,4193.95;RPPR=7.35324;RPR=4610,1930;RUN=1,1;SAF=0,0;SAP=10013.5,4193.95;SAR=4610,1930;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:20:0,12,8:0:0:12,8:428,270:-57.1221,-22.2207,-18.6084,-35.2464,0,-32.8382	1/2:110:0,46,64:0:0:46,64:1624,2201:-311.321,-179.072,-165.224,-132.599,0,-113.333	1/2:163:0,75,87:0:0:75,87:2619,3017:-458.216,-245.186,-222.608,-213.018,0,-186.829	1/2:175:1,93,78:1:31:93,78:3299,2686:-484.147,-215.665,-190.157,-266.309,0,-245.316	1/1:35:0,35,0:0:0:35,0:1224,0:-110.462,-10.5361,0,-110.462,-10.5361,-110.462	1/1:40:0,40,0:0:0:40,0:1432,0:-129.178,-12.0412,0,-129.178,-12.0412,-129.178	1/2:82:0,34,48:0:0:34,48:1193,1671:-233.273,-136.184,-125.949,-97.4382,0,-82.9887	1/1:83:0,82,0:0:0:82,0:2892,0:-260.154,-24.6845,0,-260.154,-24.6845,-260.154	1/1:32:0,31,0:0:0:31,0:1104,0:-99.3103,-9.33193,0,-99.3103,-9.33193,-99.3103	1/1:40:0,40,0:0:0:40,0:1427,0:-128.727,-12.0412,0,-128.727,-12.0412,-128.727	1/2:51:0,20,31:0:0:20,31:700,1079:-144.99,-88.0429,-82.0223,-57.2963,0,-47.9644	1/2:61:0,35,26:0:0:35,26:1256,874:-173.603,-71.1397,-60.6037,-102.809,0,-94.9825	1/2:47:0,17,30:0:0:17,30:591,1039:-132.83,-84.7875,-79.67,-48.3896,0,-39.3587	1/2:46:0,21,25:0:0:21,25:735,862:-130.129,-70.328,-64.0064,-60.1484,0,-52.6227	1/1:49:0,49,0:0:0:49,0:1744,0:-157.243,-14.7505,0,-157.243,-14.7505,-157.243	1/2:42:0,17,25:0:0:17,25:608,850:-118.855,-69.2711,-64.1536,-49.9345,0,-42.4088	1/2:41:0,24,17:0:0:24,17:840,598:-117.374,-49.0316,-41.8068,-68.6935,0,-63.576	1/2:33:0,15,18:0:0:15,18:519,609:-91.6963,-49.5169,-45.0014,-42.5213,0,-37.1027	1/1:20:0,20,0:0:0:20,0:704,0:-63.6845,-6.0206,0,-63.6845,-6.0206,-63.6845	1/1:83:0,83,0:0:0:83,0:2943,0:-265.105,-24.9855,0,-265.105,-24.9855,-265.105	1/1:76:0,76,0:0:0:76,0:2689,0:-242.255,-22.8783,0,-242.255,-22.8783,-242.255	1/2:141:0,58,82:0:0:58,82:2058,2845:-398.926,-231.247,-213.787,-167.72,0,-143.035	1/2:61:0,29,32:0:0:29,32:1036,1116:-175.56,-91.0892,-82.3594,-84.824,0,-75.1911	1/1:72:0,69,0:0:0:69,0:2454,0:-220.802,-20.7711,0,-220.802,-20.7711,-220.802	1/2:38:0,24,14:0:0:24,14:852,491:-109.732,-40.3081,-33.0833,-69.7757,0,-65.5612	1/1:169:0,169,0:0:0:169,0:5979,0:-538.216,-50.8741,0,-538.216,-50.8741,-538.216	1/2:171:0,87,84:0:0:87,84:3091,2895:-487.368,-235.491,-209.301,-252.226,0,-226.94	1/1:33:0,32,0:0:0:32,0:1148,0:-103.347,-9.63296,0,-103.347,-9.63296,-103.347	1/2:215:0,90,124:0:0:90,124:3195,4242:-604.537,-344.207,-317.115,-260.322,0,-222.994	1/2:68:0,28,40:0:0:28,40:975,1359:-189.815,-110.529,-102.1,-79.63,0,-67.5888	1/2:77:0,50,26:0:0:50,26:1757,914:-217.19,-74.1813,-59.1298,-143.076,0,-135.249	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:14:0,14,0:0:0:14,0:500,0:-45.3362,-4.21442,0,-45.3362,-4.21442,-45.3362	1/2:15:0,3,12:0:0:3,12:108,407:-42.1582,-33.3418,-32.4387,-9.17208,0,-5.55972	1/2:175:0,87,88:0:0:87,88:3101,3010:-497.136,-244.358,-218.169,-253.127,0,-226.636	1/1:155:0,154,1:0:0:154,1:5498,25:-494.684,-46.3586,0,-492.736,-44.1598,-492.435	1/1:65:0,65,0:0:0:65,0:2279,0:-205.369,-19.567,0,-205.369,-19.567,-205.369	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:58:0,29,29:0:0:29,29:1016,1000:-164.234,-81.5619,-72.832,-83.0191,0,-74.2892	1/2:28:0,18,10:0:0:18,10:632,352:-80.4415,-29.0081,-23.5896,-51.7849,0,-48.7746	1/1:139:0,139,0:0:0:139,0:4933,0:-444.052,-41.8432,0,-444.052,-41.8432,-444.052	1/1:66:0,66,0:0:0:66,0:2329,0:-209.869,-19.868,0,-209.869,-19.868,-209.869	1/1:40:0,40,0:0:0:40,0:1409,0:-127.105,-12.0412,0,-127.105,-12.0412,-127.105	1/1:63:0,62,0:0:0:62,0:2204,0:-198.331,-18.6639,0,-198.331,-18.6639,-198.331	1/1:70:0,69,0:0:0:69,0:2435,0:-219.041,-20.7711,0,-219.041,-20.7711,-219.041	1/1:174:0,172,1:0:0:172,1:6073,36:-546.314,-51.7772,0,-543.376,-48.8397,-543.075	1/2:69:0,34,35:0:0:34,35:1220,1218:-198.894,-99.3758,-89.1408,-99.8718,0,-89.3357	1/2:108:0,54,53:0:0:54,53:1934,1795:-303.24,-145.507,-129.252,-157.8,0,-141.845	1/2:143:0,75,68:0:0:75,68:2658,2360:-408.694,-192.157,-169.58,-216.888,0,-196.418	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:84:0,83,1:0:0:83,1:2972,28:-267.432,-24.9855,0,-265.214,-22.4868,-264.913	1/2:24:0,12,12:0:0:12,12:432,423:-70.0466,-34.7939,-31.1815,-35.6088,0,-31.9965	1/1:12:0,12,0:0:0:12,0:423,0:-38.4051,-3.61236,0,-38.4051,-3.61236,-38.4051	1/2:60:0,24,36:0:0:24,36:845,1264:-171.883,-103.092,-95.8675,-69.1424,0,-58.3053	1/2:37:0,17,20:0:0:17,20:597,690:-104.772,-56.1812,-51.0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chr07	42398	.	G	T	23399	PASS	AB=0.491713;ABP=4.73788;AC=48;AF=0.26087;AN=184;AO=1424;CIGAR=1X;DP=5075;DPB=5075;DPRA=1.2183;EPP=3095.19;EPPR=7924.54;GTI=0;LEN=1;MEANALT=1.04167;MQM=59.9228;MQMR=59.9929;NS=92;NUMALT=1;ODDS=2.06559;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50626;QR=130295;RO=3648;RPL=0;RPP=3095.19;RPPR=7924.54;RPR=1424;RUN=1;SAF=1424;SAP=3095.19;SAR=0;SRF=3648;SRP=7924.54;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/1:55:32,23:32:1129:23:812:-56.8376,0,-85.3597	0/1:72:43,29:43:1533:29:1025:-70.8865,0,-116.587	0/1:103:48,55:48:1698:55:1976:-147.109,0,-122.096	0/0:67:67,0:67:2377:0:0:0,-20.169,-214.185	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:78:78,0:78:2766:0:0:0,-23.4803,-249.179	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:50:32,18:32:1148:18:648:-43.6004,0,-88.5783	0/1:51:31,20:31:1112:20:720:-49.7762,0,-85.0388	0/1:36:20,16:20:720:16:568:-40.6148,0,-54.2917	0/1:47:26,21:26:936:21:741:-52.8586,0,-70.4111	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:36:26,10:26:928:10:360:-21.9072,0,-73.0012	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:121:121,0:121:4333:0:0:0,-36.4246,-390.143	0/1:98:38,60:38:1345:60:2147:-163.997,0,-91.8472	0/1:56:32,24:32:1129:24:860:-60.8642,0,-85.0587	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.604	0/1:44:24,20:24:837:20:708:-50.8003,0,-62.4003	0/0:136:136,0:136:4858:0:0:0,-40.9401,-437.371	0/1:105:50,55:50:1796:55:1945:-143.716,0,-130.314	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:178:87,91:87:3113:91:3260:-240.036,0,-226.812	0/1:63:31,32:31:1116:32:1128:-82.862,0,-81.7868	0/1:49:25,24:25:877:24:820:-59.3591,0,-64.4947	.:.:.:.:.:.:.:.	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:161:0:0:0,-1.50515,-14.8066	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:139:71,68:71:2552:68:2416:-175.821,0,-188.087	0/0:88:88,0:88:3130:0:0:0,-26.4906,-281.924	0/0:41:40,0:40:1432:0:0:0,-12.0412,-128.818	.:.:.:.:.:.:.:.	0/1:64:24,40:24:856:40:1417:-108.559,0,-58.0933	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/0:107:107,0:107:3822:0:0:0,-32.2102,-344.174	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.11	0/0:66:66,0:66:2337:0:0:0,-19.868,-210.589	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.538	0/1:48:30,18:30:1080:18:648:-44.1978,0,-83.0638	0/1:73:54,18:54:1910:18:648:-36.6179,0,-150.14	0/1:49:26,23:26:936:23:809:-58.3778,0,-69.8008	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:63:30,33:30:1065:33:1168:-86.4623,0,-77.1949	0/1:31:23,8:23:824:8:284:-16.5714,0,-65.1514	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/1:42:17,25:17:612:25:881:-66.958,0,-42.7702	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.964	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:201:80,121:80:2849:121:4332:-329.547,0,-196.14	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:53:25,27:25:900:27:957:-70.4691,0,-65.346	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:63:26,37:26:902:37:1293:-97.7041,0,-62.5255	0/1:66:32,34:32:1152:34:1209:-89.2462,0,-84.1222	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/1:21:14,7:14:504:7:248:-16.3426,0,-39.3765	0/1:33:20,13:20:705:13:468:-32.5257,0,-53.8388	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/1:90:51,39:51:1779:39:1387:-98.0355,0,-133.294	0/1:47:28,19:28:1008:19:680:-47.3808,0,-76.8879	0/0:79:79,0:79:2806:0:0:0,-23.7814,-252.777	0/1:98:49,49:49:1760:49:1744:-127.743,0,-129.183	0/1:147:74,73:74:2656:73:2586:-188.735,0,-195.034	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:99:99,0:99:3495:0:0:0,-29.802,-314.759	0/1:42:22,20:22:788:20:701:-50.7685,0,-58.6015	0/1:36:17,19:17:612:19:676:-50.3184,0,-44.5764	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:93:45,48:45:1608:48:1709:-125.871,0,-117.014	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:57:26,31:26:936:31:1104:-82.5119,0,-67.4008	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:31:9,22:9:324:22:773:-60.5576,0,-20.1739	0/1:81:52,29:52:1872:29:1044:-69.8914,0,-144.376	0/1:48:15,33:15:536:33:1142:-88.632,0,-34.1254	0/0:100:100,0:100:3581:0:0:0,-30.103,-322.495	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039
chr07	126473	.	G	A	40201.1	PASS	AB=0.541628;ABP=68.4561;AC=49;AF=0.260638;AN=188;AO=2358;CIGAR=1X;DP=7621;DPB=7621;DPRA=1.31487;EPP=5123.34;EPPR=11418.4;GTI=3;LEN=1;MEANALT=1.01923;MQM=51.2523;MQMR=59.5839;NS=94;NUMALT=1;ODDS=0.423169;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84217;QR=187786;RO=5261;RPL=0;RPP=5123.34;RPPR=11418.4;RPR=2358;RUN=1;SAF=0;SAP=5123.34;SAR=2358;SRF=0;SRP=11427.1;SRR=5261;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:37,35:37:1296:35:1256:-91.0834,0,-95.2239	0/1:51:34,17:34:1207:17:608:-39.4279,0,-93.5651	0/1:166:96,70:96:3429:70:2511:-174.877,0,-258.785	0/1:162:63,99:63:2251:99:3547:-269.706,0,-154.067	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.305	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.515	0/1:140:65,75:65:2328:75:2659:-197.02,0,-167.631	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.418	0/0:178:178,0:178:6380:0:0:0,-53.5833,-574.155	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.993	0/1:55:36,19:36:1281:19:669:-43.7405,0,-99.0254	0/1:93:57,36:57:2037:36:1280:-86.3644,0,-155.549	0/1:64:35,29:35:1252:29:1031:-72.7949,0,-93.6663	0/1:71:33,38:33:1156:38:1364:-100.563,0,-82.9614	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.613	0/1:70:41,29:41:1454:29:1031:-71.4486,0,-110.017	0/1:45:24,21:24:856:21:756:-54.411,0,-63.7971	0/1:40:16,24:16:572:24:864:-65.2803,0,-39.4354	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.7257	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.826	0/0:132:132,0:132:4705:0:0:0,-39.736,-423.127	0/1:148:45,103:45:1599:103:3664:-284.773,0,-99.6424	0/1:138:58,80:58:2071:80:2876:-215.786,0,-145.109	0/0:128:128,0:128:4588:0:0:0,-38.5318,-412.95	0/1:77:34,43:34:1220:43:1522:-112.235,0,-86.9051	0/0:156:156,0:156:5557:0:0:0,-46.9607,-500.219	0/1:106:54,52:54:1899:52:1853:-133.694,0,-139.204	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.621	0/1:147:73,74:73:2603:74:2611:-190.563,0,-190.257	0/1:100:41,59:41:1448:59:2105:-157.733,0,-100.175	0/1:79:36,43:36:1296:43:1544:-115.221,0,-93.1626	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8454	0/0:23:23,0:23:819:0:0:0,-6.92369,-73.9819	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/1:6:2,4:2:72:4:144:-11.4424,0,-5.03054	0/1:199:87,112:87:3102:112:3995:-298.124,0,-219.483	0/0:129:128,1:128:4555:1:36:0,-35.2594,-406.177	0/0:48:48,0:48:1673:0:0:0,-14.4494,-150.829	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:100:50,50:50:1783:50:1762:-127.508,0,-130.649	0/1:16:6,10:6:216:10:356:-27.323,0,-14.974	0/0:144:144,0:144:5137:0:0:0,-43.3483,-462.11	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.395	0/0:37:37,0:37:1310:0:0:0,-11.1381,-118.195	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.583	0/0:51:51,0:51:1810:0:0:0,-15.3525,-163.159	0/0:124:124,0:124:4428:0:0:0,-37.3277,-398.666	0/1:112:52,60:52:1857:60:2152:-159.593,0,-133.683	0/1:79:35,44:35:1256:44:1580:-118.503,0,-89.5593	0/1:121:57,64:57:2030:64:2300:-170.391,0,-146.532	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0704	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.779	0/1:76:36,40:36:1265:40:1440:-106.529,0,-91.2723	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:93:36,57:36:1277:57:2044:-154.301,0,-87.181	0/1:35:17,18:17:612:18:648:-48.0255,0,-44.8728	0/1:7:2,5:2:72:5:180:-14.4214,0,-4.72951	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6935	0/1:71:40,31:40:1408:31:1116:-77.5689,0,-105.641	0/0:101:101,0:101:3613:0:0:0,-30.404,-325.354	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:105:32,73:32:1152:73:2606:-202.269,0,-72.382	0/0:215:215,0:215:7703:0:0:0,-64.7214,-692.863	0/1:82:45,37:45:1604:37:1328:-94.3927,0,-119.919	0/0:21:21,0:21:724:0:0:0,-6.32163,-65.4675	0/1:112:37,75:37:1324:75:2669:-206.114,0,-85.7417	0/1:106:39,67:39:1385:67:2404:-184.304,0,-93.0331	0/1:41:19,22:19:663:22:792:-58.8061,0,-47.4922	0/1:91:47,44:47:1684:44:1571:-113.197,0,-124.413	0/1:47:20,27:20:720:27:956:-71.9371,0,-50.9804	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.4033	0/1:123:51,72:51:1819:72:2580:-193.972,0,-126.704	0/1:124:46,77:46:1656:77:2741:-208.316,0,-112.064	0/0:164:163,1:163:5796:1:32:0,-46.1797,-518.382	0/1:120:61,59:61:2196:59:2112:-153.802,0,-161.777	0/1:84:29,55:29:1040:55:1964:-150.348,0,-68.6278	0/0:86:86,0:86:3074:0:0:0,-25.8886,-276.852	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.478	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.562	0/0:93:93,0:93:3314:0:0:0,-27.9958,-298.386	0/0:175:174,0:174:6232:0:0:0,-52.3792,-560.599	0/1:68:35,33:35:1252:33:1184:-86.2312,0,-92.5104	0/1:63:29,34:29:1040:34:1220:-90.8395,0,-74.9178	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.16	0/1:140:68,72:68:2448:72:2564:-188.544,0,-178.416	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5418	0/1:68:32,36:32:1124:36:1292:-95.2437,0,-80.9599	0/0:135:135,0:135:4807:0:0:0,-40.639,-432.755	0/1:39:22,17:22:792:17:608:-42.5987,0,-59.864	0/1:111:54,57:54:1940:57:2027:-148.066,0,-141.405	0/1:85:28,57:28:1004:57:2027:-156.443,0,-65.0837	0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.358	0/0:80:79,1:79:2832:1:36:0,-20.4892,-251.506
chr07	129626	.	TATC	AATC,AATT	113417	PASS	AB=0.532254,0.465001;ABP=35.9281,41.7696;AC=149,37;AF=0.801075,0.198925;AN=186;AO=6063,1700;CIGAR=1X3M,1X2M1X;DP=7778;DPB=7778.5;DPRA=0,1.64771;EPP=13160,3694.51;EPPR=5.18177;GTI=1;LEN=1,4;MEANALT=1.6129,2.25581;MQM=31.8661,24.9729;MQMR=56;NS=93;NUMALT=2;ODDS=1.00409;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=192903,60072;QR=34;RO=1;RPL=6062,1700;RPP=13160,3694.51;RPPR=5.18177;RPR=1,0;RUN=1,1;SAF=6061,1700;SAP=13151.3,3694.51;SAR=2,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15,0:0:0:15,0:450,0:-36.7089,-4.51545,0,-36.7089,-4.51545,-36.7089	1/1:71:0,71,0:0:0:71,0:2127,0:-172.478,-21.3731,0,-172.478,-21.3731,-172.478	1/1:41:0,41,0:0:0:41,0:1230,0:-99.8699,-12.3422,0,-99.8699,-12.3422,-99.8699	1/2:131:0,72,59:0:0:72,59:2346,2091:-283.044,-112.963,-91.2891,-170.349,0,-152.588	1/1:75:0,75,0:0:0:75,0:2379,0:-194.303,-22.5773,0,-194.303,-22.5773,-194.303	1/1:55:0,55,0:0:0:55,0:1651,0:-133.97,-16.5567,0,-133.97,-16.5567,-133.97	1/2:106:0,47,59:0:0:47,59:1531,2099:-224.157,-113.178,-99.03,-111.252,0,-93.4915	1/1:115:0,115,0:0:0:115,0:3432,0:-278.241,-34.6185,0,-278.241,-34.6185,-278.241	1/1:77:0,77,0:0:0:77,0:2309,0:-187.234,-23.1793,0,-187.234,-23.1793,-187.234	1/1:74:0,74,0:0:0:74,0:2422,0:-198.237,-22.2762,0,-198.237,-22.2762,-198.237	1/2:62:0,30,31:0:0:30,31:983,1100:-130.545,-59.1629,-50.132,-71.3985,0,-62.0666	1/1:50:0,50,0:0:0:50,0:1500,0:-121.733,-15.0515,0,-121.733,-15.0515,-121.733	1/1:39:0,39,0:0:0:39,0:1170,0:-95.0114,-11.7402,0,-95.0114,-11.7402,-95.0114	1/2:99:0,61,38:0:0:61,38:1911,1341:-210.245,-72.8686,-54.5058,-137.637,0,-126.198	1/1:67:0,67,0:0:0:67,0:2149,0:-175.646,-20.169,0,-175.646,-20.169,-175.646	1/2:69:0,50,19:0:0:50,19:1559,667:-148.289,-36.5393,-21.4878,-112.005,0,-106.286	1/1:53:0,53,0:0:0:53,0:1590,0:-129.021,-15.9546,0,-129.021,-15.9546,-129.021	1/1:24:0,24,0:0:0:24,0:720,0:-58.5724,-7.22472,0,-58.5724,-7.22472,-58.5724	1/1:23:0,23,0:0:0:23,0:690,0:-56.1431,-6.92369,0,-56.1431,-6.92369,-56.1431	1/1:154:0,152,1:0:0:152,1:4934,36:-403.023,-45.7566,0,-401.104,-43.8042,-400.803	1/1:139:0,138,1:0:0:138,1:4291,36:-349.11,-41.5421,0,-347.191,-39.3763,-346.89	1/2:85:0,30,55:0:0:30,55:1012,1936:-178.752,-104.297,-95.2664,-74.7402,0,-58.1835	1/2:71:0,39,31:0:0:39,31:1257,1103:-150.265,-59.3247,-47.5845,-90.9472,0,-81.6153	1/1:101:0,101,0:0:0:101,0:3152,0:-256.859,-30.404,0,-256.859,-30.404,-256.859	1/2:54:0,28,26:0:0:28,26:860,931:-111.513,-50.1031,-41.6742,-61.6712,0,-53.8445	1/1:207:0,206,0:0:0:206,0:7081,0:-582.007,-62.0122,0,-582.007,-62.0122,-582.007	1/2:167:0,87,80:0:0:87,80:2752,2846:-350.284,-152.759,-126.569,-197.789,0,-173.707	1/1:41:0,41,0:0:0:41,0:1290,0:-105.284,-12.3422,0,-105.284,-12.3422,-105.284	1/2:234:0,118,115:0:0:118,115:4063,4031:-517.648,-219.311,-183.79,-298.413,0,-263.794	1/2:201:0,121,80:0:0:121,80:3786,2827:-424.742,-153.082,-116.657,-271.92,0,-247.838	1/2:106:0,70,36:0:0:70,36:2269,1260:-232.599,-68.2978,-47.2257,-164.562,0,-153.725	1/1:4:0,4,0:0:0:4,0:128,0:-10.7267,-1.20412,0,-10.7267,-1.20412,-10.7267	1/1:13:0,13,0:0:0:13,0:404,0:-33.1221,-3.91339,0,-33.1221,-3.91339,-33.1221	1/1:1:0,1,0:0:0:1,0:30,0:-2.69919,-0.30103,0,-2.69919,-0.30103,-2.69919	1/1:6:0,6,0:0:0:6,0:180,0:-14.8455,-1.80618,0,-14.8455,-1.80618,-14.8455	.:.:.:.:.:.:.:.	1/2:237:0,94,143:0:0:94,143:3215,5080:-508.757,-273.135,-244.839,-235.908,0,-192.86	1/1:216:0,215,1:0:0:215,1:6778,36:-551.845,-64.7215,0,-549.926,-62.5556,-549.625	1/1:67:0,67,0:0:0:67,0:2011,0:-163.121,-20.169,0,-163.121,-20.169,-163.121	1/2:5:0,4,1:0:0:4,1:128,36:-11.4331,-2.16588,-0.961755,-9.52258,0,-9.22155	1/2:100:0,56,42:0:0:56,42:1784,1486:-208.936,-80.3743,-63.5166,-128.599,0,-115.956	1/2:23:0,13,10:0:0:13,10:416,347:-49.3287,-19.2972,-15.3838,-30.2961,0,-27.2858	1/1:106:0,106,0:0:0:106,0:3344,0:-272.785,-31.9092,0,-272.785,-31.9092,-272.785	1/1:105:0,105,0:0:0:105,0:3413,0:-279.316,-31.6082,0,-279.316,-31.6082,-279.316	1/1:68:0,68,0:0:0:68,0:2223,0:-182.27,-20.47,0,-182.27,-20.47,-182.27	1/1:90:0,89,0:0:0:89,0:3009,0:-247.134,-26.7917,0,-247.134,-26.7917,-247.134	1/1:118:0,118,0:0:0:118,0:3540,0:-286.924,-35.5215,0,-286.924,-35.5215,-286.924	1/1:148:0,147,1:0:0:147,1:4737,36:-386.982,-44.2514,0,-385.063,-42.0855,-384.762	1/2:95:0,61,34:0:0:61,34:1989,1202:-209.341,-65.1377,-46.7749,-144.467,0,-134.232	1/2:202:0,98,104:0:0:98,104:3170,3710:-428.547,-199.133,-169.632,-229.684,0,-198.377	1/2:126:0,62,64:0:0:62,64:2122,2238:-277.623,-121.953,-103.289,-155.949,0,-136.684	1/1:8:0,8,0:0:0:8,0:264,0:-21.8933,-2.40824,0,-21.8933,-2.40824,-21.8933	1/1:113:0,113,0:0:0:113,0:3377,0:-273.943,-34.0164,0,-273.943,-34.0164,-273.943	1/2:49:0,27,22:0:0:27,22:911,773:-108.935,-42.2381,-34.1103,-66.9705,0,-60.3478	1/1:7:0,7,0:0:0:7,0:193,0:-15.723,-2.10721,0,-15.723,-2.10721,-15.723	1/2:66:0,45,21:0:0:45,21:1382,749:-139.141,-40.4645,-26.9181,-98.9323,0,-92.6106	1/2:50:0,26,23:0:0:26,23:815,804:-102.58,-43.7856,-35.9588,-58.8185,0,-51.8948	1/2:5:0,1,4:0:0:1,4:35,143:-10.3383,-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chr07	129664	.	CTGT	CCGT,CGT	136791	PASS	AB=0.496659,0.497773;ABP=3.35851,3.16506;AC=139,49;AF=0.739362,0.260638;AN=188;AO=4795,1796;CIGAR=1M1X2M,1M1D2M;DP=6631;DPB=6181.5;DPRA=0,1.31948;EPP=10397.9,3902.97;EPPR=13.8677;GTI=1;LEN=1,1;MEANALT=1.92553,2.41071;MQM=59.9812,59.9994;MQMR=60;NS=94;NUMALT=2;ODDS=1.7897;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=169330,61597;QR=180;RO=5;RPL=2,0;RPP=10397.9,3902.97;RPPR=13.8677;RPR=4793,1796;RUN=1,1;SAF=0,0;SAP=10415.2,3902.97;SAR=4795,1796;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,24,8:0:0:24,8:852,268:-91.4747,-22.0389,-14.8142,-69.7757,0,-67.3674	1/2:64:0,40,24:0:0:40,24:1432,827:-184.307,-67.5204,-55.4792,-117.136,0,-109.912	1/2:91:0,47,44:0:0:47,44:1667,1516:-259.306,-123.487,-109.338,-136.168,0,-122.923	1/2:144:0,54,89:0:0:54,89:1932,3069:-406.84,-249.291,-233.036,-157.541,0,-130.749	1/1:34:0,32,1:0:0:32,1:1135,36:-102.15,-9.63296,0,-99.2126,-6.64062,-98.9115	1/1:14:0,14,0:0:0:14,0:495,0:-44.883,-4.21442,0,-44.883,-4.21442,-44.883	1/2:53:0,24,28:0:0:24,28:840,940:-144.467,-76.1174,-68.8927,-68.334,0,-59.9052	1/1:68:0,68,0:0:0:68,0:2372,0:-213.735,-20.47,0,-213.735,-20.47,-213.735	1/1:81:1,80,0:1:36:80,0:2807,0:-249.271,-20.7852,0,-249.572,-24.0824,-252.509	1/1:64:1,62,0:1:36:62,0:2203,0:-195,-15.6615,0,-195.301,-18.6639,-198.238	1/2:39:0,20,18:0:0:20,18:683,612:-105.047,-49.623,-43.6024,-55.4059,0,-49.9874	1/2:74:0,35,39:0:0:35,39:1212,1309:-204.865,-106.362,-95.826,-98.844,0,-87.1038	1/2:72:0,36,36:0:0:36,36:1275,1233:-204.299,-100.432,-89.5948,-104.215,0,-93.3781	1/2:52:0,28,24:0:0:28,24:987,817:-146.985,-66.617,-58.1882,-80.7142,0,-73.4895	1/1:61:0,61,0:0:0:61,0:2143,0:-193.135,-18.3628,0,-193.135,-18.3628,-193.135	1/2:48:0,20,28:0:0:20,28:712,962:-136.496,-78.4604,-72.4398,-58.3861,0,-49.9572	1/2:23:0,7,15:0:0:7,15:252,523:-63.1081,-42.5426,-40.4354,-20.5794,0,-16.0639	1/2:27:0,19,8:0:0:19,8:659,280:-76.6949,-23.1311,-17.4115,-53.9127,0,-51.5045	1/1:19:0,19,0:0:0:19,0:668,0:-60.4457,-5.71957,0,-60.4457,-5.71957,-60.4457	1/1:88:0,87,1:0:0:87,1:3107,36:-279.497,-26.1896,0,-276.56,-22.8924,-276.259	1/1:124:0,123,0:0:0:123,0:4335,0:-389.967,-37.0267,0,-389.967,-37.0267,-389.967	1/2:87:0,25,62:0:0:25,62:875,2109:-242.607,-171.414,-163.888,-71.5404,0,-52.8765	1/2:120:0,67,53:0:0:67,53:2368,1851:-343.769,-150.912,-130.743,-193.208,0,-177.253	1/1:29:0,25,2:0:0:25,2:892,72:-80.2403,-7.52575,0,-74.3653,-1.65092,-73.7632	1/2:73:0,40,33:0:0:40,33:1423,1120:-207.146,-91.1672,-79.126,-116.326,0,-106.392	1/1:210:0,207,1:0:0:207,1:7309,36:-657.542,-62.3132,0,-654.605,-59.3575,-654.304	1/2:163:0,79,84:0:0:79,84:2790,2869:-460.373,-233.163,-209.382,-227.557,0,-202.271	1/1:27:0,27,0:0:0:27,0:947,0:-85.5438,-8.12781,0,-85.5438,-8.12781,-85.5438	1/2:199:0,112,87:0:0:112,87:3967,3006:-567.749,-244.589,-210.873,-323.509,0,-297.32	1/2:103:0,52,51:0:0:52,51:1803,1725:-286.725,-140.175,-124.521,-146.892,0,-131.54	1/2:116:0,58,58:0:0:58,58:2057,1984:-328.963,-161.371,-143.911,-167.94,0,-150.48	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:19:0,16,0:0:0:16,0:576,0:-51.8376,-4.81648,0,-51.8376,-4.81648,-51.8376	1/1:5:0,5,0:0:0:5,0:171,0:-15.7255,-1.50515,0,-15.7255,-1.50515,-15.7255	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/2:17:0,12,5:0:0:12,5:428,164:-48.4889,-13.5787,-9.96637,-35.2464,0,-33.7413	1/2:169:0,87,79:0:0:87,79:3065,2684:-467.252,-217.709,-191.519,-249.571,0,-225.789	1/1:146:0,146,0:0:0:146,0:5196,0:-467.775,-43.9504,0,-467.775,-43.9504,-467.775	1/1:46:0,46,0:0:0:46,0:1602,0:-144.468,-13.8474,0,-144.468,-13.8474,-144.468	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:89:0,39,49:0:0:39,49:1362,1684:-247.612,-136.821,-125.081,-110.865,0,-96.1143	1/2:29:0,14,15:0:0:14,15:500,502:-81.7588,-40.9832,-36.7688,-41.1218,0,-36.6063	1/1:98:0,97,0:0:0:97,0:3433,0:-308.823,-29.1999,0,-308.823,-29.1999,-308.823	1/1:60:1,59,0:1:36:59,0:2078,0:-183.663,-14.4635,0,-183.964,-17.7608,-186.902	1/1:63:0,63,0:0:0:63,0:2186,0:-197.004,-18.9649,0,-197.004,-18.9649,-197.004	1/1:130:0,130,0:0:0:130,0:4643,0:-418.033,-39.1339,0,-418.033,-39.1339,-418.033	1/1:124:0,124,0:0:0:124,0:4405,0:-396.624,-37.3277,0,-396.624,-37.3277,-396.624	1/1:107:0,107,0:0:0:107,0:3815,0:-343.548,-32.2102,0,-343.548,-32.2102,-343.548	1/2:40:0,23,17:0:0:23,17:781,600:-112.537,-49.2117,-42.288,-63.6724,0,-58.5549	1/2:73:0,33,39:0:0:33,39:1171,1359:-205.919,-110.508,-100.574,-95.403,0,-83.6628	1/2:17:0,9,8:0:0:9,8:320,288:-49.9345,-23.8592,-21.1499,-26.4331,0,-24.0248	1/1:9:0,9,0:0:0:9,0:311,0:-28.3237,-2.70927,0,-28.3237,-2.70927,-28.3237	1/1:91:0,90,0:0:0:90,0:3191,0:-287.056,-27.0927,0,-287.056,-27.0927,-287.056	1/2:34:0,15,19:0:0:15,19:540,663:-98.34,-54.2739,-49.7584,-44.4211,0,-38.7015	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:84:0,42,41:0:0:42,41:1485,1394:-234.005,-113.052,-100.409,-120.94,0,-108.597	1/2:27:0,10,17:0:0:10,17:342,608:-77.6853,-49.9345,-46.9242,-28.0985,0,-22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chr07	138980	.	C	A	51344.6	PASS	AB=0.519406;ABP=21.7199;AC=50;AF=0.265957;AN=188;AO=2981;CIGAR=1X;DP=10094;DPB=10094;DPRA=1.19243;EPP=6398.23;EPPR=15058;GTI=0;LEN=1;MEANALT=1.08772;MQM=59.9973;MQMR=59.9986;NS=94;NUMALT=1;ODDS=0.314137;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106561;QR=253562;RO=7108;RPL=2972;RPP=6398.23;RPPR=15049.4;RPR=9;RUN=1;SAF=0;SAP=6476.17;SAR=2981;SRF=1;SRP=15429.2;SRR=7107;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:29,42:29:1019:42:1492:-113.201,0,-70.6482	0/1:89:37,52:37:1332:52:1853:-140.256,0,-93.3907	0/1:201:101,100:101:3573:100:3572:-261.179,0,-261.272	0/1:132:62,70:62:2208:70:2514:-186.776,0,-159.249	0/0:122:121,1:121:4329:1:36:0,-33.1274,-386.186	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:129:73,56:73:2587:56:2016:-142.88,0,-194.244	0/0:155:154,1:154:5506:1:36:0,-43.0614,-492.067	0/0:179:179,0:179:6396:0:0:0,-53.8844,-575.73	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:101:47,54:47:1676:54:1932:-143.753,0,-120.723	0/1:118:55,63:55:1952:63:2228:-165.26,0,-140.432	0/1:81:39,42:39:1376:42:1508:-111.631,0,-99.7525	0/1:106:61,45:61:2172:45:1603:-112.65,0,-163.837	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/1:62:29,33:29:1035:33:1180:-87.8442,0,-74.7992	0/1:37:21,16:21:748:16:572:-40.6753,0,-56.5072	0/1:30:13,17:13:468:17:608:-46.0211,0,-33.4287	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:190:190,0:190:6749:0:0:0,-57.1957,-607.484	0/0:283:283,0:283:10076:0:0:0,-85.1915,-906.777	0/1:115:38,77:38:1337:77:2733:-211.594,0,-86.0095	0/1:119:46,72:46:1633:72:2575:-196.118,0,-111.376	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/1:187:93,94:93:3314:94:3345:-244.975,0,-242.177	0/0:182:181,1:181:6483:1:36:0,-51.1892,-579.956	0/1:427:216,210:216:7727:210:7501:-546.533,0,-566.864	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:270:144,126:144:5141:126:4504:-324.25,0,-381.553	0/1:123:52,71:52:1841:71:2535:-191.374,0,-128.942	0/1:105:66,39:66:2349:39:1392:-93.9709,0,-180.059	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/1:59:31,28:31:1085:28:993:-71.9226,0,-80.1962	0/1:218:118,100:118:4225:100:3580:-256.783,0,-314.804	0/0:136:136,0:136:4841:0:0:0,-40.9401,-435.845	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:112:64,48:64:2283:48:1706:-120.11,0,-172.016	0/1:31:14,17:14:489:17:612:-46.0815,0,-35.007	0/0:203:203,0:203:7262:0:0:0,-61.1091,-653.632	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.682	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:177:177,0:177:6280:0:0:0,-53.2823,-565.296	0/0:135:135,0:135:4794:0:0:0,-40.639,-431.617	0/0:139:139,0:139:4976:0:0:0,-41.8432,-447.989	0/1:77:35,42:35:1248:42:1502:-112.295,0,-89.4456	0/1:155:76,79:76:2704:79:2816:-207.021,0,-196.943	0/1:154:74,79:74:2652:79:2832:-208.701,0,-192.509	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:176:176,0:176:6292:0:0:0,-52.9813,-566.374	0/1:49:23,26:23:824:26:936:-69.809,0,-59.7328	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:120:43,77:43:1510:77:2735:-210.269,0,-100.066	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:29:28,1:28:999:1:36:0,-5.13159,-86.6262	0/1:106:65,41:65:2328:41:1468:-100.507,0,-177.871	0/0:140:137,3:137:4874:3:108:0,-32.069,-428.737	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:132:61,71:61:2170:71:2543:-189.384,0,-155.829	0/0:252:252,0:252:8990:0:0:0,-75.8596,-809.08	0/1:72:29,43:29:1036:43:1548:-117.939,0,-71.8798	0/0:59:59,0:59:2089:0:0:0,-17.7608,-188.278	0/1:135:62,73:62:2203:73:2620:-195.408,0,-157.896	0/1:237:80,157:80:2868:157:5607:-433.407,0,-187.013	0/1:84:45,39:45:1604:39:1395:-100.562,0,-119.364	0/1:66:22,44:22:788:44:1584:-122.984,0,-51.3768	0/1:60:32,28:32:1148:28:995:-71.8022,0,-85.568	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:145:67,78:67:2385:78:2785:-207.24,0,-171.257	0/1:93:46,47:46:1640:47:1688:-124.211,0,-119.893	0/0:264:264,0:264:9429:0:0:0,-79.4719,-848.57	0/1:145:57,88:57:2033:88:3160:-240.975,0,-139.591	0/1:185:87,97:87:3096:97:3459:-255.771,0,-223.117	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.957	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0316	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/0:161:161,0:161:5749:0:0:0,-48.4658,-517.526	0/1:54:26,28:26:928:28:1004:-74.4202,0,-67.5826	0/1:67:31,36:31:1108:36:1275:-94.8833,0,-79.862	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:196:104,92:104:3728:92:3300:-238.217,0,-276.719	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:82:48,34:48:1711:34:1220:-85.4223,0,-129.591	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/1:68:31,37:31:1099:37:1328:-99.3522,0,-78.7494	0/1:190:104,85:104:3727:85:3043:-216.845,0,-278.375	0/1:100:34,66:34:1224:66:2372:-183.635,0,-80.364	0/0:86:85,1:85:2984:1:36:0,-22.2903,-265.193	0/0:102:100,2:100:3584:2:72:0,-23.8683,-315.93
chr07	167138	.	TTGAA	CTGAA,CTGAG	94115.4	PASS	AB=0.480963,0.516108;ABP=12.6834,9.93598;AC=135,51;AF=0.725806,0.274194;AN=186;AO=3622,1597;CIGAR=1X4M,1X3M1X;DP=5243;DPB=5243;DPRA=14.3819,1.32499;EPP=7868.08,3470.85;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=1.79121,2.17308;MQM=40.7107,29.0019;MQMR=49;NS=93;NUMALT=2;ODDS=0.666517;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=128206,56406;QR=36;RO=1;RPL=0,0;RPP=7868.08,3470.85;RPPR=5.18177;RPR=3622,1597;RUN=1,1;SAF=3622,1597;SAP=7868.08,3470.85;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,14,12:0:0:14,12:500,421:-62.3453,-23.9443,-19.7299,-38.6931,0,-35.0807	1/2:38:0,14,24:0:0:14,24:486,846:-84.6823,-47.8016,-43.5871,-37.18,0,-29.9553	1/2:52:0,27,25:0:0:27,25:959,882:-123.461,-50.0337,-41.9059,-73.7212,0,-66.1955	1/2:104:0,30,74:0:0:30,74:1048,2602:-249.313,-167.538,-158.507,-82.0961,0,-59.8199	1/1:32:0,30,1:0:0:30,1:1044,36:-90.1397,-9.0309,0,-87.98,-6.87749,-87.679	1/1:24:1,23,0:1:36:23,0:797,0:-64.5212,-3.64595,0,-64.8222,-6.92369,-67.7434	1/2:67:0,37,30:0:0:37,30:1295,1045:-170.077,-67.9892,-56.8511,-102.397,0,-93.3662	1/1:88:0,88,0:0:0:88,0:3098,0:-262.532,-26.4906,0,-262.532,-26.4906,-262.532	1/1:67:0,67,0:0:0:67,0:2381,0:-202.031,-20.169,0,-202.031,-20.169,-202.031	1/1:56:0,56,0:0:0:56,0:1974,0:-172.459,-16.8577,0,-172.459,-16.8577,-172.459	1/2:48:0,26,22:0:0:26,22:922,783:-123.914,-50.9174,-43.0907,-73.3112,0,-66.6885	1/2:69:0,42,27:0:0:42,27:1498,959:-168.021,-53.8688,-41.2255,-114.439,0,-106.311	1/2:55:0,22,33:0:0:22,33:765,1173:-123.693,-65.8809,-59.2583,-58.1094,0,-48.1754	1/2:56:0,25,31:0:0:25,31:884,1112:-135.677,-67.2272,-59.7014,-68.7583,0,-59.4264	1/1:40:0,40,0:0:0:40,0:1416,0:-124.402,-12.0412,0,-124.402,-12.0412,-124.402	1/2:40:0,22,18:0:0:22,18:767,639:-98.498,-39.0033,-32.3806,-59.7948,0,-54.3763	1/2:73:0,38,35:0:0:38,35:1318,1226:-169.695,-69.6139,-58.1747,-100.37,0,-89.8339	1/2:57:0,34,23:0:0:34,23:1210,825:-138.535,-46.268,-36.033,-92.5549,0,-85.6312	1/1:37:0,37,0:0:0:37,0:1315,0:-112.224,-11.1381,0,-112.224,-11.1381,-112.224	1/1:67:0,67,0:0:0:67,0:2381,0:-208.86,-20.169,0,-208.86,-20.169,-208.86	1/1:55:0,55,0:0:0:55,0:1960,0:-170.109,-16.5567,0,-170.109,-16.5567,-170.109	1/2:65:0,14,51:0:0:14,51:496,1768:-158.837,-119.215,-115.001,-39.958,0,-24.6055	1/2:44:0,25,19:0:0:25,19:894,663:-113.94,-43.2564,-35.7307,-70.9953,0,-65.2757	1/1:105:0,104,0:0:0:104,0:3671,0:-317.379,-31.3071,0,-317.379,-31.3071,-317.379	1/2:43:0,17,26:0:0:17,26:608,918:-103.442,-55.9634,-50.8459,-47.7933,0,-39.9665	1/1:132:0,132,0:0:0:132,0:4690,0:-412.728,-39.736,0,-412.728,-39.736,-412.728	1/2:76:0,45,31:0:0:45,31:1553,1091:-187.679,-66.715,-53.1687,-121.26,0,-111.928	1/1:30:0,30,0:0:0:30,0:1072,0:-92.9746,-9.0309,0,-92.9746,-9.0309,-92.9746	1/2:125:0,60,62:0:0:60,62:2132,2193:-315.823,-145.988,-127.926,-169.897,0,-151.233	1/2:71:0,38,33:0:0:38,33:1335,1161:-174.62,-70.5658,-59.1266,-104.356,0,-94.4219	1/2:65:0,20,44:0:0:20,44:699,1554:-154.753,-99.8895,-93.8689,-54.8927,0,-41.6474	1/1:4:0,4,0:0:0:4,0:144,0:-12.7816,-1.20412,0,-12.7816,-1.20412,-12.7816	1/1:4:0,4,0:0:0:4,0:132,0:-11.6036,-1.20412,0,-11.6036,-1.20412,-11.6036	1/1:3:0,3,0:0:0:3,0:108,0:-9.48528,-0.90309,0,-9.48528,-0.90309,-9.48528	1/1:4:0,4,0:0:0:4,0:144,0:-12.5341,-1.20412,0,-12.5341,-1.20412,-12.5341	2/2:5:0,0,5:0:0:0,5:0,180:-11.77,-11.77,-11.77,-1.50515,-1.50515,0	1/2:197:0,89,107:0:0:89,107:3182,3800:-509.345,-255.688,-228.897,-253.673,0,-221.463	1/1:57:0,56,1:0:0:56,1:1954,36:-168.616,-16.8577,0,-166.455,-14.4225,-166.154	1/1:50:0,49,0:0:0:49,0:1718,0:-145.513,-14.7505,0,-145.513,-14.7505,-145.513	.:.:.:.:.:.:.:.	1/2:56:0,27,29:0:0:27,29:968,1014:-137.498,-61.8846,-53.7568,-75.9214,0,-67.1916	1/2:18:0,7,11:0:0:7,11:248,391:-43.3446,-23.9485,-21.8413,-19.7105,0,-16.3991	1/1:85:0,85,0:0:0:85,0:2979,0:-257.528,-25.5876,0,-257.528,-25.5876,-257.528	1/1:60:0,60,0:0:0:60,0:2130,0:-186.572,-18.0618,0,-186.572,-18.0618,-186.572	1/1:52:0,52,0:0:0:52,0:1860,0:-163.246,-15.6536,0,-163.246,-15.6536,-163.246	1/1:62:0,62,0:0:0:62,0:2208,0:-194.312,-18.6639,0,-194.312,-18.6639,-194.312	1/1:53:0,53,0:0:0:53,0:1853,0:-157.535,-15.9546,0,-157.535,-15.9546,-157.535	1/1:60:0,59,0:0:0:59,0:2072,0:-180.735,-17.7608,0,-180.735,-17.7608,-180.735	1/2:90:0,33,56:0:0:33,56:1172,1971:-220.202,-127.366,-117.432,-92.8146,0,-75.957	1/2:49:0,14,35:0:0:14,35:492,1237:-118.927,-79.9224,-75.708,-39.3314,0,-28.7953	1/2:128:0,63,65:0:0:63,65:2243,2265:-331.353,-152.735,-133.77,-178.939,0,-159.372	1/1:2:0,2,0:0:0:2,0:72,0:-6.65513,-0.60206,0,-6.65513,-0.60206,-6.65513	1/1:70:0,70,0:0:0:70,0:2493,0:-211.705,-21.0721,0,-211.705,-21.0721,-211.705	1/2:18:0,10,8:0:0:10,8:339,287:-46.3599,-19.3077,-16.2974,-27.3657,0,-24.9575	1/1:8:0,8,0:0:0:8,0:278,0:-23.8413,-2.40824,0,-23.8413,-2.40824,-23.8413	1/2:34:0,14,20:0:0:14,20:496,707:-81.673,-42.9048,-38.6903,-39.08,0,-33.0594	1/2:43:0,22,21:0:0:22,21:779,746:-109.761,-48.051,-41.4284,-62.025,0,-55.7034	2/2:3:0,0,3:0:0:0,3:0,106:-8.3617,-8.3617,-8.3617,-0.90309,-0.90309,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chr07	200790	.	C	T	124967	PASS	AB=0.470624;ABP=40.519;AC=138;AF=0.734043;AN=188;AO=6157;CIGAR=1X;DP=8815;DPB=8815;DPRA=0;EPP=13355.4;EPPR=5763.93;GTI=2;LEN=1;MEANALT=1.01064;MQM=59.993;MQMR=60;NS=94;NUMALT=1;ODDS=1.05724;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218085;QR=94149;RO=2657;RPL=6156;RPP=13364.1;RPPR=5763.93;RPR=1;RUN=1;SAF=6156;SAP=13364.1;SAR=1;SRF=2657;SRP=5772.61;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:14,23:14:491:23:820:-62.9844,0,-33.383	0/1:148:79,69:79:2793:69:2434:-174.763,0,-207.055	0/1:162:94,68:94:3362:68:2436:-170.728,0,-254.028	0/1:212:122,90:122:4294:90:3202:-224.585,0,-322.82	1/1:30:1,29:1:36:29:1040:-90.3161,-5.43263,0	1/1:42:0,42:0:0:42:1480:-133.492,-12.6433,0	0/1:114:57,57:57:2021:57:2035:-149.104,0,-147.844	1/1:103:0,102:0:0:102:3587:-322.68,-30.7051,0	1/1:102:0,102:0:0:102:3564:-320.96,-30.7051,0	1/1:100:0,100:0:0:100:3573:-321.776,-30.103,0	0/1:79:39,40:39:1384:40:1419:-104.225,0,-101.077	0/1:111:61,50:61:2159:50:1773:-126.438,0,-161.16	0/1:79:35,44:35:1232:44:1560:-116.91,0,-87.3999	0/1:91:40,51:40:1409:51:1803:-135.157,0,-99.7115	1/1:77:0,77:0:0:77:2736:-246.484,-23.1793,0	0/1:70:28,42:28:972:42:1478:-112.241,0,-66.7171	0/1:89:38,51:38:1329:51:1808:-136.208,0,-93.116	0/1:72:33,39:33:1180:39:1375:-102.374,0,-84.8339	1/1:96:0,96:0:0:96:3373:-303.789,-28.8989,0	1/1:166:2,164:2:68:164:5824:-517.816,-43.5133,0	1/1:225:1,224:1:36:224:7899:-707.348,-64.1335,0	0/1:96:75,21:75:2655:21:727:-36.8506,0,-210.296	0/1:71:42,29:42:1496:29:994:-68.3935,0,-113.561	1/1:90:0,90:0:0:90:3180:-286.425,-27.0927,0	0/1:77:49,28:49:1742:28:1004:-67.4966,0,-133.884	1/1:216:0,216:0:0:216:7662:-689.62,-65.0225,0	0/1:209:101,108:101:3584:108:3836:-282.521,0,-259.852	1/1:57:0,57:0:0:57:2024:-182.433,-17.1587,0	0/1:185:92,93:92:3273:93:3305:-241.978,0,-239.099	0/1:106:56,50:56:2004:50:1767:-127.403,0,-148.724	0/1:151:87,64:87:3041:64:2267:-158.837,0,-228.462	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	1/1:1:0,1:0:0:1:25:-2.49986,-0.30103,0	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:210:103,107:103:3621:107:3779:-277.094,0,-262.881	1/1:124:0,124:0:0:124:4402:-396.353,-37.3277,0	1/1:95:0,95:0:0:95:3322:-299.203,-28.5979,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:119:66,53:66:2355:53:1873:-133.025,0,-176.386	0/1:49:14,35:14:489:35:1244:-97.5142,0,-29.5884	1/1:108:0,108:0:0:108:3838:-345.618,-32.5112,0	1/1:91:0,91:0:0:91:3225:-290.473,-27.3937,0	1/1:77:1,76:1:36:76:2670:-236.949,-19.581,0	1/1:112:0,112:0:0:112:3973:-357.762,-33.7154,0	1/1:75:0,75:0:0:75:2615:-235.594,-22.5773,0	1/1:126:2,124:2:72:124:4398:-389.157,-31.0931,0	0/1:87:41,46:41:1448:46:1625:-120.347,0,-104.424	0/1:115:63,52:63:2252:52:1864:-133.421,0,-168.325	0/1:154:91,63:91:3239:63:2233:-154.874,0,-245.374	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:117:0,117:0:0:117:4187:-377.011,-35.2205,0	0/1:42:26,16:26:923:16:572:-39.1702,0,-70.7435	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:117:58,59:58:2054:59:2104:-154.409,0,-149.907	0/1:39:20,19:20:703:19:671:-48.9756,0,-51.8533	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	0/1:77:41,36:41:1452:36:1279:-92.2331,0,-107.794	1/1:138:0,138:0:0:138:4903:-441.425,-41.5421,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:159:58,101:58:2061:101:3585:-274.994,0,-137.895	1/1:141:0,141:0:0:141:5032:-453.025,-42.4452,0	0/1:64:48,16:48:1678:16:576:-32.9091,0,-132.036	1/1:104:1,103:1:36:103:3676:-327.443,-27.7088,0	0/1:160:98,62:98:3477:62:2208:-150.82,0,-264.977	0/1:113:83,30:83:2967:30:1059:-61.604,0,-233.246	0/1:36:17,19:17:608:19:684:-51.0532,0,-44.2149	0/1:85:48,37:48:1716:37:1328:-94.2347,0,-129.138	0/1:86:40,46:40:1428:46:1619:-120.107,0,-102.929	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	0/1:96:51,45:51:1817:45:1584:-113.95,0,-134.91	0/1:88:50,38:50:1796:38:1347:-95.0388,0,-135.432	1/1:180:0,180:0:0:180:6367:-573.124,-54.1854,0	0/1:117:65,52:65:2305:52:1859:-132.368,0,-172.489	0/1:127:68,59:68:2418:59:2094:-150.498,0,-179.645	1/1:86:0,86:0:0:86:3042:-274.008,-25.8886,0	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	1/1:83:0,83:0:0:83:2964:-266.994,-24.9855,0	1/1:61:0,61:0:0:61:2148:-193.586,-18.3628,0	1/1:227:0,227:0:0:227:8075:-726.773,-68.3338,0	0/1:103:48,55:48:1686:55:1936:-143.461,0,-121.016	0/1:62:28,34:28:991:34:1208:-90.3622,0,-70.8397	1/1:114:0,114:0:0:114:4032:-363.07,-34.3174,0	0/1:162:85,77:85:3008:77:2690:-193.578,0,-222.184	1/1:50:0,50:0:0:50:1771:-159.672,-15.0515,0	0/1:71:33,38:33:1171:38:1344:-99.887,0,-84.3235	1/1:116:0,116:0:0:116:4082:-367.57,-34.9195,0	0/1:69:34,35:34:1192:35:1219:-89.2388,0,-86.8113	0/1:136:67,69:67:2376:69:2431:-178.105,0,-173.156	0/1:85:53,32:53:1853:32:1132:-76.601,0,-141.457	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	1/1:127:0,127:0:0:127:4500:-405.171,-38.2308,0
chr07	225003	.	C	A	79923.2	PASS	AB=0.50706;ABP=4.42062;AC=136;AF=0.731183;AN=186;AO=3907;CIGAR=1X;DP=5521;DPB=5521;DPRA=14.9918;EPP=8486.95;EPPR=3505.6;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9864;MQMR=59.9926;NS=93;NUMALT=1;ODDS=0.102247;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139439;QR=57238;RO=1613;RPL=2;RPP=8469.59;RPPR=3505.6;RPR=3905;RUN=1;SAF=2;SAP=8469.59;SAR=3905;SRF=0;SRP=3505.6;SRR=1613;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:57:29,28:29:1003:28:984:-71.7098,0,-73.4181	0/1:91:49,42:49:1730:42:1508:-108.621,0,-128.587	0/1:92:42,50:42:1500:50:1780:-132.788,0,-107.6	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	1/1:27:0,27:0:0:27:967:-87.1893,-8.12781,0	0/1:104:45,59:45:1604:59:2112:-159.042,0,-113.343	1/1:115:0,115:0:0:115:4101:-369.275,-34.6185,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:105:0,105:0:0:105:3735:-336.35,-31.6082,0	0/1:80:38,42:38:1368:42:1495:-110.761,0,-99.3384	0/1:74:48,26:48:1712:26:932:-61.9226,0,-132.089	0/1:50:25,25:25:888:25:896:-65.9089,0,-65.1875	0/1:75:37,38:37:1311:38:1348:-99.0416,0,-95.7136	1/1:50:1,49:1:36:49:1764:-155.445,-11.4532,0	0/1:53:20,33:20:704:33:1167:-89.3818,0,-47.7299	0/1:44:22,22:22:760:22:769:-56.2833,0,-55.4706	0/1:60:27,33:27:956:33:1171:-87.6349,0,-68.2939	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:87:0,87:0:0:87:3107:-279.857,-26.1896,0	0/1:50:41,9:41:1460:9:324:-14.4544,0,-116.645	0/1:44:23,21:23:824:21:747:-54.309,0,-61.238	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:31:16,15:16:568:15:527:-38.4283,0,-42.1199	1/1:156:0,156:0:0:156:5569:-501.332,-46.9607,0	0/1:68:23,45:23:820:45:1612:-124.9,0,-53.6525	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:117:59,58:59:2104:58:2088:-152.969,0,-154.409	0/1:74:26,48:26:932:48:1720:-132.809,0,-61.9226	0/1:27:14,13:14:489:13:451:-32.792,0,-36.2111	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:144:63,81:63:2191:81:2908:-218.607,0,-154.103	1/1:93:0,93:0:0:93:3295:-296.769,-27.9958,0	1/1:63:0,63:0:0:63:2244:-202.224,-18.9649,0	.:.:.:.:.:.:.:.	0/1:93:50,43:50:1775:43:1544:-111.257,0,-132.037	0/1:23:13,10:13:441:10:360:-25.8206,0,-33.0895	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:34:0,34:0:0:34:1199:-108.215,-10.235,0	1/1:43:0,43:0:0:43:1528:-137.811,-12.9443,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:76:0,76:0:0:76:2716:-244.684,-22.8783,0	0/1:53:22,31:22:776:31:1108:-84.0764,0,-54.2076	0/1:183:67,116:67:2372:116:4122:-316.078,0,-158.648	0/1:62:23,39:23:819:39:1400:-107.635,0,-55.3677	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	0/1:54:36,18:36:1284:18:639:-41.5826,0,-99.6078	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:88:49,39:49:1744:39:1396:-99.4485,0,-130.731	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:73:42,31:42:1478:31:1116:-78.7765,0,-111.338	1/1:95:1,94:1:36:94:3348:-297.937,-24.9996,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:88:44,44:44:1584:44:1568:-114.921,0,-116.361	1/1:117:0,117:0:0:117:4169:-375.393,-35.2205,0	0/1:67:45,22:45:1585:22:792:-51.3502,0,-122.769	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:66:17,49:17:612:49:1759:-138.726,0,-35.5455	0/1:111:74,37:74:2615:37:1332:-86.7681,0,-202.182	0/1:48:24,24:24:856:24:851:-62.46,0,-62.9117	0/1:23:16,7:16:568:7:252:-16.1053,0,-44.5282	0/1:36:22,14:22:783:14:495:-34.046,0,-59.9559	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:56:22,34:22:792:34:1207:-92.0776,0,-54.748	0/1:81:53,28:53:1904:28:1000:-65.9314,0,-147.254	1/1:87:0,87:0:0:87:3086:-277.969,-26.1896,0	0/1:109:56,53:56:1993:53:1904:-138.825,0,-146.83	0/1:98:39,58:39:1369:58:2031:-153.497,0,-93.947	1/1:135:0,135:0:0:135:4826:-434.494,-40.6391,0	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	1/1:44:1,43:1:36:43:1537:-135.024,-9.64705,0	1/1:58:0,58:0:0:58:2065:-186.119,-17.4597,0	1/1:117:0,117:0:0:117:4136:-372.427,-35.2205,0	0/1:52:23,29:23:824:29:1044:-78.6212,0,-58.8298	0/1:39:20,19:20:716:19:684:-50.1502,0,-53.0275	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	0/1:97:50,47:50:1779:47:1684:-122.647,0,-131.192	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:62:37,25:37:1303:25:900:-62.6572,0,-98.9067	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	0/1:54:24,30:24:856:30:1059:-79.3637,0,-61.1055	0/1:136:58,78:58:2063:78:2788:-210.221,0,-145	0/1:48:21,27:21:739:27:968:-72.9879,0,-52.3829	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:75:1,74:1:36:74:2651:-235.237,-18.979,0
chr07	249326	.	G	A	38074.5	PASS	AB=0.510975;ABP=7.63383;AC=49;AF=0.260638;AN=188;AO=2269;CIGAR=1X;DP=7832;DPB=7832;DPRA=1.54155;EPP=4930.08;EPPR=12065.5;GTI=3;LEN=1;MEANALT=1.07547;MQM=59.5249;MQMR=59.9537;NS=94;NUMALT=1;ODDS=0.306818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80837;QR=196455;RO=5555;RPL=2269;RPP=4930.08;RPPR=12039.5;RPR=0;RUN=1;SAF=2269;SAP=4930.08;SAR=0;SRF=5552;SRP=12039.5;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:8,15:8:273:15:540:-41.9931,0,-17.9765	0/1:99:46,53:46:1603:53:1900:-141.285,0,-114.754	0/1:185:94,91:94:3309:91:3234:-235.58,0,-242.327	0/1:200:99,101:99:3515:101:3594:-263.407,0,-256.353	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/1:117:63,54:63:2252:54:1919:-137.74,0,-167.723	0/0:82:82,0:82:2900:0:0:0,-24.6845,-260.458	0/0:55:55,0:55:1935:0:0:0,-16.5566,-174.423	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.534	0/0:86:86,0:86:3041:0:0:0,-25.8886,-273.918	0/1:75:33,42:33:1162:42:1498:-112.498,0,-82.3081	0/1:65:33,32:33:1156:32:1136:-82.9623,0,-84.7767	0/1:95:43,52:43:1479:52:1840:-137.269,0,-104.802	0/0:47:47,0:47:1641:0:0:0,-14.1484,-147.973	0/1:69:32,37:32:1118:37:1328:-99.042,0,-80.1549	0/1:98:54,44:54:1919:44:1534:-108.644,0,-143.486	0/1:58:27,31:27:960:31:1108:-82.5713,0,-69.2565	0/0:59:59,0:59:2076:0:0:0,-17.7608,-187.109	0/0:138:137,0:137:4893:0:0:0,-41.2411,-440.161	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.751	0/1:126:39,87:39:1404:87:3115:-241.708,0,-88.7295	0/1:45:27,18:27:954:18:648:-45.1008,0,-72.6253	0/0:113:113,0:113:3990:0:0:0,-34.0164,-359.289	0/1:41:17,24:17:608:24:856:-65.0097,0,-42.7098	0/0:119:118,1:118:4180:1:36:0,-32.2243,-372.727	0/1:164:67,97:67:2377:97:3426:-259.137,0,-164.818	0/0:31:31,0:31:1079:0:0:0,-9.33193,-97.4149	0/1:268:147,121:147:5240:121:4311:-307.478,0,-391.061	0/1:113:59,54:59:2088:54:1928:-139.283,0,-154.171	0/1:111:58,53:58:2065:53:1880:-135.86,0,-152.705	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:178:92,86:92:3253:86:3053:-221.407,0,-239.409	0/0:381:377,3:377:13326:3:108:0,-104.609,-1189.09	0/0:89:89,0:89:3138:0:0:0,-26.7917,-282.648	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:136:69,67:69:2468:67:2403:-175.43,0,-181.434	0/1:47:27,20:27:959:20:704:-49.5302,0,-72.477	0/0:53:52,0:52:1817:0:0:0,-15.6536,-163.447	0/0:24:24,0:24:833:0:0:0,-7.22472,-75.2847	0/0:59:59,0:59:2072:0:0:0,-17.7608,-186.663	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/0:81:80,1:80:2860:1:32:0,-21.1856,-254.44	0/0:143:143,0:143:5075:0:0:0,-43.0473,-456.896	0/1:68:31,37:31:1094:37:1323:-98.8966,0,-78.2982	0/1:97:59,38:59:2101:38:1364:-93.4901,0,-160.158	0/1:142:79,63:79:2793:63:2264:-161.266,0,-208.864	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/0:159:159,0:159:5605:0:0:0,-47.8638,-504.544	0/1:32:11,21:11:396:21:756:-58.7334,0,-26.3498	0/0:10:10,0:10:337:0:0:0,-3.0103,-30.6547	0/1:104:52,51:52:1848:51:1795:-130.305,0,-135.234	0/1:26:7,19:7:252:19:684:-54.0565,0,-15.2022	0/1:6:3,3:3:104:3:108:-8.26739,0,-7.89663	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/1:68:38,30:38:1364:30:1060:-75.2328,0,-102.461	0/0:122:120,2:120:4201:2:72:0,-29.8889,-371.437	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:74:46,28:46:1622:28:1000:-68.0345,0,-123.991	0/0:144:144,0:144:5088:0:0:0,-43.3483,-458.062	0/1:66:29,36:29:1021:36:1280:-95.5704,0,-72.2737	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.422	0/1:39:17,22:17:595:22:792:-59.8655,0,-42.1365	0/1:112:51,61:51:1796:61:2188:-163.461,0,-128.204	0/1:33:17,16:17:599:16:561:-40.8785,0,-44.3041	0/1:76:29,47:29:1007:47:1664:-127.052,0,-68.0589	0/1:86:46,40:46:1652:40:1436:-103.645,0,-123.08	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:136:44,92:44:1555:92:3312:-257.306,0,-99.3009	0/1:78:41,37:41:1426:37:1331:-96.5928,0,-105.151	0/0:167:167,0:167:5910:0:0:0,-50.272,-531.941	0/1:150:79,71:79:2820:71:2525:-182.344,0,-208.829	0/1:168:91,77:91:3207:77:2740:-196.244,0,-238.27	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:93:93,0:93:3300:0:0:0,-27.9958,-297.219	0/0:136:136,0:136:4800:0:0:0,-40.9401,-432.155	0/0:153:152,0:152:5344:0:0:0,-45.7566,-480.737	0/1:88:55,32:55:1941:32:1127:-75.1859,0,-148.415	0/1:56:25,31:25:870:31:1107:-83.0778,0,-61.7569	0/0:52:52,0:52:1823:0:0:0,-15.6536,-164.347	0/1:98:46,52:46:1595:52:1845:-136.811,0,-114.333	0/0:43:43,0:43:1508:0:0:0,-12.9443,-136.01	0/0:61:60,0:60:2109:0:0:0,-18.0618,-189.744	0/0:70:70,0:70:2486:0:0:0,-21.0721,-223.993	0/1:60:25,35:25:883:35:1256:-95.2835,0,-61.7257	0/1:160:71,89:71:2501:89:3165:-236.878,0,-177.178	0/1:70:25,45:25:888:45:1591:-122.316,0,-59.1669	0/0:41:41,0:41:1449:0:0:0,-12.3422,-130.704	0/0:90:89,1:89:3138:1:36:0,-23.4944,-279.047
chr07	249386	.	T	C	36677.9	PASS	AB=0.498207;ABP=3.13488;AC=49;AF=0.263441;AN=186;AO=2232;CIGAR=1X;DP=7934;DPB=7934;DPRA=1.32738;EPP=4841.05;EPPR=12326.2;GTI=1;LEN=1;MEANALT=1.05455;MQM=59.5515;MQMR=59.9781;NS=93;NUMALT=1;ODDS=3.73215;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78998;QR=202900;RO=5699;RPL=0;RPP=4849.74;RPPR=12343.5;RPR=2232;RUN=1;SAF=1;SAP=4841.05;SAR=2231;SRF=2;SRP=12360.9;SRR=5697;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:17,22:17:608:22:792:-59.84,0,-43.3119	0/1:103:58,45:58:2072:45:1620:-115.063,0,-155.745	0/1:189:109,80:109:3895:80:2851:-199.875,0,-293.849	0/1:220:109,111:109:3900:111:3927:-286.811,0,-284.967	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:86:48,38:48:1674:38:1356:-96.4492,0,-125.054	0/0:134:134,0:134:4783:0:0:0,-40.338,-430.619	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:100:100,0:100:3563:0:0:0,-30.103,-320.879	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/1:52:27,25:27:964:25:871:-63.0386,0,-71.4233	0/1:47:17,30:17:603:30:1068:-82.2229,0,-40.4511	0/1:69:32,37:32:1133:37:1288:-95.3977,0,-81.5056	0/0:59:59,0:59:2096:0:0:0,-17.7608,-188.907	0/1:46:25,21:25:896:21:743:-53.3083,0,-67.113	0/1:77:42,34:42:1477:34:1146:-80.1438,0,-109.985	0/1:35:26,9:26:911:9:320:-18.6063,0,-71.7689	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:113:113,0:113:4028:0:0:0,-34.0164,-362.706	0/0:136:136,0:136:4835:0:0:0,-40.9401,-435.308	0/1:154:49,105:49:1743:105:3730:-289.531,0,-110.795	0/1:28:15,13:15:528:13:468:-34.0308,0,-39.4225	0/0:71:70,1:70:2503:1:36:0,-17.7749,-221.924	0/1:71:34,37:34:1216:37:1312:-97.0065,0,-88.3734	0/0:233:232,1:232:8213:1:36:0,-66.5417,-735.592	0/1:113:60,53:60:2139:53:1882:-135.632,0,-158.761	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/1:186:72,114:72:2557:114:4048:-308.438,0,-174.388	0/1:195:124,71:124:4435:71:2530:-169.242,0,-340.546	0/1:193:105,88:105:3720:88:3099:-221.025,0,-276.906	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	0/1:137:66,71:66:2342:71:2458:-180.144,0,-169.798	0/0:176:176,0:176:6267:0:0:0,-52.9813,-564.128	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.59	.:.:.:.:.:.:.:.	0/1:135:60,75:60:2131:75:2668:-199.705,0,-151.419	0/1:42:26,15:26:924:15:536:-35.8729,0,-70.7758	0/0:90:89,1:89:3175:1:36:0,-23.4944,-282.376	0/0:62:62,0:62:2192:0:0:0,-18.6639,-197.544	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/0:85:84,1:84:2991:1:36:0,-21.9893,-265.823	0/0:108:108,0:108:3838:0:0:0,-32.5112,-345.618	0/0:165:165,0:165:5857:0:0:0,-49.6699,-527.241	0/1:108:50,58:50:1775:58:2071:-154.138,0,-127.521	0/1:243:137,106:137:4876:106:3755:-264.94,0,-365.843	0/1:198:107,91:107:3796:91:3236:-231.83,0,-282.235	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:135:135,0:135:4836:0:0:0,-40.639,-435.394	0/1:65:40,25:40:1419:25:896:-61.3372,0,-108.44	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7919	0/1:79:37,42:37:1320:42:1497:-111.216,0,-95.3206	0/1:30:6,24:6:212:24:842:-67.0485,0,-10.3939	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:16:16,0:16:558:0:0:0,-4.81648,-50.5465	0/1:99:58,41:58:2075:41:1459:-101.006,0,-157.218	0/0:118:118,0:118:4216:0:0:0,-35.5215,-379.621	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:119:56,63:56:2012:63:2242:-166.21,0,-145.531	0/0:117:114,2:114:4079:2:72:0,-28.4426,-360.459	0/1:86:47,39:47:1675:39:1400:-100.406,0,-125.14	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.903	0/1:99:50,49:50:1765:49:1730:-126.173,0,-129.329	0/1:146:49,97:49:1736:97:3450:-266.708,0,-112.574	0/1:31:18,13:18:635:13:464:-32.7609,0,-48.145	0/1:109:57,52:57:2025:52:1810:-130.336,0,-149.709	0/1:41:25,16:25:883:16:559:-38.2954,0,-67.4452	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/1:90:44,46:44:1580:46:1632:-120.026,0,-115.399	0/1:74:36,38:36:1284:38:1355:-99.9262,0,-93.5872	0/0:102:102,0:102:3635:0:0:0,-30.7051,-327.356	0/1:150:56,94:56:2003:94:3355:-256.967,0,-135.388	0/1:91:50,41:50:1772:41:1431:-101.664,0,-132.367	0/0:98:98,0:98:3495:0:0:0,-29.5009,-314.753	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:93:93,0:93:3324:0:0:0,-27.9958,-299.378	0/0:76:76,0:76:2686:0:0:0,-22.8783,-241.985	0/0:170:170,0:170:6091:0:0:0,-51.1751,-548.29	0/1:72:32,40:32:1135:40:1394:-104.073,0,-80.7839	0/1:31:22,9:22:780:9:311:-18.9918,0,-61.1911	0/0:47:46,1:46:1644:1:32:0,-10.9491,-145.049	0/1:75:38,37:38:1351:37:1297:-94.4319,0,-99.3123	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/1:47:23,24:23:797:24:844:-62.1002,0,-57.8973	0/1:93:53,40:53:1870:40:1418:-99.909,0,-140.582	0/1:57:20,37:20:708:37:1265:-96.9863,0,-46.8869	0/0:112:111,1:111:3980:1:36:0,-30.1171,-354.165	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.734
chr07	249417	.	G	T	35877.1	PASS	AB=0.491427;ABP=5.87707;AC=48;AF=0.258065;AN=186;AO=2212;CIGAR=1X;DP=8035;DPB=8035;DPRA=1.36682;EPP=4797.63;EPPR=12584.6;GTI=1;LEN=1;MEANALT=1.05882;MQM=59.5014;MQMR=59.9677;NS=93;NUMALT=1;ODDS=0.196541;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77907;QR=207426;RO=5818;RPL=2212;RPP=4806.31;RPPR=12601.9;RPR=0;RUN=1;SAF=1;SAP=4797.63;SAR=2211;SRF=2;SRP=12619.3;SRR=5816;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:15,21:15:536:21:744:-56.4218,0,-37.7377	0/1:105:62,43:62:2216:43:1532:-106.551,0,-168.092	0/1:191:111,80:111:3958:80:2830:-197.275,0,-298.907	0/1:223:110,113:110:3944:113:3990:-291.658,0,-288.022	0/0:65:65,0:65:2306:0:0:0,-19.5669,-207.8	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.583	0/1:84:46,38:46:1648:38:1334:-95.0666,0,-123.322	0/0:135:135,0:135:4815:0:0:0,-40.639,-433.507	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/0:99:99,0:99:3531:0:0:0,-29.802,-318	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/1:53:27,26:27:956:26:936:-68.5803,0,-70.4011	0/1:51:19,32:19:680:32:1121:-85.7825,0,-46.1766	0/1:71:32,39:32:1144:39:1388:-103.75,0,-81.8964	0/0:57:57,0:57:2023:0:0:0,-17.1587,-182.342	0/1:46:24,22:24:847:22:784:-56.9907,0,-62.7013	0/1:77:45,32:45:1616:32:1129:-78.7142,0,-122.551	0/1:34:25,9:25:887:9:301:-17.1787,0,-69.9131	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:113:113,0:113:4022:0:0:0,-34.0164,-362.162	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871	0/1:155:50,105:50:1779:105:3706:-287.066,0,-113.733	0/1:28:15,13:15:531:13:464:-33.6687,0,-39.6931	0/0:73:72,1:72:2580:1:36:0,-18.3769,-228.851	0/1:77:40,37:40:1428:37:1328:-96.6383,0,-105.638	0/0:244:243,1:243:8661:1:36:0,-69.853,-775.889	0/1:115:63,52:63:2252:52:1783:-126.116,0,-168.325	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:189:76,113:76:2720:113:3981:-301.562,0,-188.149	0/1:202:129,73:129:4620:73:2544:-168.392,0,-354.889	0/1:200:108,91:108:3842:91:3195:-226.781,0,-285.861	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	0/1:131:66,64:66:2339:64:2272:-165.248,0,-171.276	0/0:179:179,0:179:6411:0:0:0,-53.8844,-577.077	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	.:.:.:.:.:.:.:.	0/1:140:65,75:65:2319:75:2646:-196.218,0,-166.826	0/1:41:26,15:26:932:15:540:-36.5943,0,-71.8566	0/0:95:94,0:94:3360:0:0:0,-28.2968,-302.257	0/0:62:62,0:62:2194:0:0:0,-18.6639,-197.725	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.631	0/0:85:84,1:84:3000:1:36:0,-21.9893,-266.632	0/0:115:115,0:115:4081:0:0:0,-34.6184,-367.478	0/0:171:171,0:171:6082:0:0:0,-51.4761,-547.484	0/1:110:49,61:49:1756:61:2169:-162.351,0,-125.211	0/1:250:143,107:143:5095:107:3798:-266.683,0,-383.438	0/1:199:108,91:108:3844:91:3225:-230.552,0,-286.25	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:139:139,0:139:4932:0:0:0,-41.8432,-444.033	0/1:62:38,24:38:1352:24:807:-54.2161,0,-103.317	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2366	0/1:81:39,42:39:1400:42:1454:-106.741,0,-101.911	0/1:33:7,26:7:252:26:902:-71.0464,0,-13.095	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:98:60,38:60:2132:38:1341:-90.6905,0,-162.645	0/0:115:115,0:115:4119:0:0:0,-34.6184,-370.894	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:122:57,65:57:2048:65:2255:-166.464,0,-147.866	0/0:120:119,1:119:4235:1:36:0,-32.5253,-377.733	0/1:84:46,38:46:1636:38:1368:-98.1297,0,-122.234	0/0:91:91,0:91:3247:0:0:0,-27.3937,-292.45	0/1:94:48,46:48:1703:46:1628:-118.508,0,-125.258	0/1:144:49,95:49:1721:95:3331:-256.596,0,-111.824	0/1:31:17,14:17:608:14:492:-35.2758,0,-45.7201	0/1:108:58,50:58:2059:50:1757:-125.883,0,-153.07	0/1:41:25,16:25:900:16:572:-39.4712,0,-68.9788	0/0:33:33,0:33:1162:0:0:0,-9.93399,-104.885	0/1:90:47,43:47:1680:43:1453:-103.923,0,-124.394	0/1:73:36,37:36:1283:37:1271:-92.6983,0,-93.7974	0/0:110:110,0:110:3893:0:0:0,-33.1133,-350.566	0/1:150:57,93:57:2019:93:3260:-248.419,0,-136.828	0/1:86:50,36:50:1782:36:1273:-88.966,0,-133.995	0/0:102:102,0:102:3640:0:0:0,-30.7051,-327.806	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:77:77,0:77:2727:0:0:0,-23.1793,-245.674	0/0:170:170,0:170:6052:0:0:0,-51.1751,-544.785	0/1:72:32,40:32:1131:40:1436:-107.852,0,-80.4236	0/1:31:21,10:21:744:10:360:-23.4124,0,-57.9524	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:79:38,40:38:1346:40:1413:-103.549,0,-97.5944	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.803	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.591	0/1:45:23,22:23:828:22:773:-56.3101,0,-61.2978	0/1:95:56,39:56:2008:39:1404:-98.0476,0,-152.395	0/1:55:20,35:20:711:35:1221:-93.6348,0,-47.759	0/0:113:113,0:113:4003:0:0:0,-34.0164,-360.092	0/0:85:84,0:84:2982:0:0:0,-25.2865,-268.292
chr07	250813	.	A	G	104258	PASS	AB=0.477919;ABP=18.6413;AC=140;AF=0.744681;AN=188;AO=5002;CIGAR=1X;DP=6941;DPB=6941;DPRA=0;EPP=10804;EPPR=4180.94;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9682;MQMR=59.9488;NS=94;NUMALT=1;ODDS=0.147079;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178656;QR=69274;RO=1932;RPL=6;RPP=10812.7;RPPR=4180.94;RPR=4996;RUN=1;SAF=5001;SAP=10856;SAR=1;SRF=1932;SRP=4198.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:22,10:22:788:10:360:-23.1113,0,-61.6118	0/1:100:55,45:55:1964:45:1603:-114.456,0,-146.932	0/1:112:37,75:37:1332:75:2680:-207.73,0,-86.467	0/1:167:91,76:91:3249:76:2703:-193.05,0,-242.358	1/1:56:0,56:0:0:56:2003:-180.543,-16.8577,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:118:64,54:64:2292:54:1932:-138.635,0,-171.02	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:64:0,63:0:0:63:2252:-202.583,-18.9649,0	1/1:52:1,51:1:36:51:1813:-158.916,-12.0579,0	0/1:51:30,21:30:1080:21:752:-52.6537,0,-82.1607	0/1:41:20,21:20:716:21:748:-55.3031,0,-52.4255	0/1:47:21,26:21:756:26:932:-70.0505,0,-54.2188	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	0/1:32:18,14:18:648:14:491:-34.8882,0,-49.0189	0/1:53:25,28:25:900:28:988:-73.2793,0,-65.3664	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:183:1,182:1:36:182:6536:-584.722,-51.4902,0	1/1:124:0,124:0:0:124:4422:-398.149,-37.3277,0	0/1:72:44,28:44:1546:28:1004:-69.0017,0,-117.754	0/1:57:27,30:27:953:30:1057:-78.2811,0,-68.9246	1/1:88:0,88:0:0:88:3140:-282.826,-26.4906,0	0/1:59:25,34:25:900:34:1215:-91.895,0,-63.5602	1/1:192:3,189:3:108:189:6742:-596.781,-47.7226,0	0/1:133:80,53:80:2876:53:1904:-131.601,0,-217.764	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:203:104,99:104:3740:99:3540:-257.7,0,-275.69	0/1:69:29,40:29:1040:40:1436:-108.767,0,-73.1433	0/1:80:44,36:44:1580:36:1279:-91.33,0,-118.409	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/1:152:77,75:77:2772:75:2696:-197.127,0,-203.964	1/1:184:0,184:0:0:184:6533:-588.057,-55.3895,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:144:77,67:77:2764:67:2408:-173.628,0,-205.653	0/1:36:16,20:16:576:20:716:-53.9306,0,-41.3379	1/1:133:0,133:0:0:133:4734:-426.219,-40.037,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:68:0,68:0:0:68:2414:-217.515,-20.47,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	1/1:185:0,185:0:0:185:6618:-595.7,-55.6906,0	0/1:101:47,54:47:1680:54:1928:-143.393,0,-121.083	0/1:98:54,44:54:1921:44:1565:-111.639,0,-143.664	0/1:126:60,66:60:2156:66:2351:-173.918,0,-156.376	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:90:0,90:0:0:90:3203:-288.494,-27.0927,0	0/1:36:28,8:28:1008:8:288:-15.4303,0,-80.1993	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:127:69,58:69:2472:58:2069:-148.249,0,-184.186	0/1:58:25,33:25:896:33:1180:-89.0483,0,-63.5006	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:55:25,30:25:896:30:1076:-80.5962,0,-64.4037	1/1:92:1,91:1:36:91:3253:-289.392,-24.0965,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:141:73,68:73:2620:68:2436:-177.05,0,-193.602	1/1:172:0,172:0:0:172:6134:-552.113,-51.7772,0	0/1:75:35,39:35:1256:39:1400:-103.663,0,-90.7093	1/1:74:0,74:0:0:74:2637:-237.577,-22.2762,0	0/1:113:62,51:62:2213:51:1828:-130.785,0,-165.417	0/1:94:63,31:63:2260:31:1104:-71.3738,0,-175.366	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:59:29,30:29:1036:30:1072:-79.0317,0,-75.7931	0/1:44:18,26:18:644:26:936:-71.3141,0,-45.0453	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:88:56,31:56:2012:31:1112:-73.8419,0,-154.804	0/1:50:28,22:28:1000:22:788:-56.1933,0,-75.2639	1/1:131:0,129:0:0:129:4592:-413.088,-38.8329,0	0/1:112:48,64:48:1724:64:2278:-171.565,0,-121.73	0/1:96:52,44:52:1872:44:1573:-112.943,0,-139.86	1/1:65:0,64:0:0:64:2283:-205.372,-19.2659,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:70:0,70:0:0:70:2491:-224.442,-21.0721,0	1/1:115:1,113:1:36:113:4031:-359.38,-31.079,0	1/1:207:0,207:0:0:207:7395:-665.587,-62.3132,0	0/1:70:35,35:35:1256:35:1252:-91.912,0,-92.2732	0/1:33:19,14:19:684:14:500:-35.4022,0,-51.9563	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:111:52,59:52:1872:59:2120:-157.654,0,-134.717	1/1:42:0,42:0:0:42:1504:-135.648,-12.6433,0	1/1:61:0,61:0:0:61:2171:-195.656,-18.3628,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:27:17,10:17:608:10:342:-22.9809,0,-46.9242	0/1:91:48,43:48:1728:43:1519:-109.609,0,-128.412	0/1:68:43,25:43:1548:25:887:-59.6781,0,-119.143	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0
chr07	250846	.	G	A	32128.5	PASS	AB=0.519616;ABP=15.1926;AC=49;AF=0.260638;AN=188;AO=1901;CIGAR=1X;DP=6830;DPB=6830;DPRA=1.25078;EPP=4130.98;EPPR=10680.1;GTI=0;LEN=1;MEANALT=1.03774;MQM=59.9658;MQMR=59.9777;NS=94;NUMALT=1;ODDS=1.28;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67835;QR=173204;RO=4925;RPL=1901;RPP=4130.98;RPPR=10688.8;RPR=0;RUN=1;SAF=1901;SAP=4130.98;SAR=0;SRF=4924;SRP=10688.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:11,22:11:378:22:788:-61.3108,0,-24.4151	0/1:97:45,52:45:1575:52:1846:-137.219,0,-112.84	0/1:109:72,37:72:2527:37:1319:-86.1989,0,-194.868	0/1:160:75,85:75:2636:85:3048:-226.384,0,-188.693	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.509	0/0:53:53,0:53:1873:0:0:0,-15.9546,-168.847	0/1:119:55,64:55:1939:64:2281:-169.728,0,-138.961	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.113	0/0:60:60,0:60:2106:0:0:0,-18.0618,-189.806	0/0:50:49,0:49:1738:0:0:0,-14.7505,-155.067	0/1:52:23,29:23:807:29:1012:-75.7358,0,-57.2938	0/1:42:22,20:22:767:20:707:-51.3113,0,-56.7062	0/1:47:26,21:26:893:21:756:-54.2188,0,-66.5298	0/0:53:53,0:53:1839:0:0:0,-15.9546,-165.79	0/1:31:13,18:13:455:18:639:-48.5063,0,-31.95	0/1:53:29,24:29:985:24:855:-61.3156,0,-73.0015	0/1:23:9,14:9:320:14:504:-38.7744,0,-22.2187	0/0:31:31,0:31:1067:0:0:0,-9.33193,-96.3339	0/0:185:184,1:184:6536:1:36:0,-52.0923,-584.729	0/0:121:121,0:121:4250:0:0:0,-36.4246,-382.624	0/1:70:27,43:27:972:43:1528:-116.741,0,-66.7258	0/1:57:31,26:31:1067:26:928:-66.6795,0,-79.1752	0/0:85:85,0:85:2992:0:0:0,-25.5875,-269.513	0/1:60:34,26:34:1195:26:936:-66.4977,0,-89.7928	0/0:186:182,4:182:6428:4:144:0,-42.678,-565.3	0/1:136:55,81:55:1931:81:2896:-218.661,0,-133.123	0/0:37:37,0:37:1278:0:0:0,-11.1381,-115.316	0/1:194:89,105:89:3132:105:3748:-279.121,0,-223.705	0/1:67:40,27:40:1432:27:964:-66.9078,0,-109.009	0/1:77:33,44:33:1166:44:1580:-119.312,0,-82.0663	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:373:0:0:0,-3.31133,-33.8952	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/1:148:73,75:73:2575:75:2678:-196.712,0,-187.448	0/0:181:181,0:181:6358:0:0:0,-54.4864,-572.32	0/0:54:54,0:54:1874:0:0:0,-16.2556,-168.935	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:139:65,74:65:2308:74:2636:-195.645,0,-166.138	0/1:36:20,16:20:696:16:568:-40.6148,0,-52.1253	0/0:131:131,0:131:4631:0:0:0,-39.4349,-416.954	0/0:34:34,0:34:1198:0:0:0,-10.235,-108.124	0/0:36:36,0:36:1252:0:0:0,-10.8371,-112.979	0/0:69:69,0:69:2417:0:0:0,-20.7711,-217.784	0/0:74:74,0:74:2580:0:0:0,-22.2762,-232.447	0/0:181:180,0:180:6326:0:0:0,-54.1854,-569.078	0/1:99:53,46:53:1885:46:1648:-118.807,0,-140.125	0/1:98:43,54:43:1532:54:1931:-144.506,0,-108.613	0/1:125:66,59:66:2324:59:2105:-152.09,0,-171.79	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:90:90,0:90:3181:0:0:0,-27.0927,-286.513	0/1:37:8,29:8:288:29:1035:-82.325,0,-15.1293	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:126:57,69:57:2025:69:2451:-182.893,0,-144.591	0/1:58:33,25:33:1162:25:888:-62.7793,0,-87.4256	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:12:10,2:10:352:2:72:-3.22436,0,-28.4058	0/1:54:31,23:31:1089:23:828:-58.5885,0,-82.0617	0/0:92:91,1:91:3177:1:36:0,-24.0965,-282.56	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:140:67,73:67:2359:73:2611:-193.093,0,-170.423	0/0:164:164,0:164:5789:0:0:0,-49.3689,-521.127	0/1:71:36,35:36:1276:35:1256:-91.9722,0,-93.7699	0/0:72:72,0:72:2542:0:0:0,-21.6742,-229.031	0/1:111:50,61:50:1779:61:2184:-163.412,0,-126.978	0/1:91:33,58:33:1143:58:2069:-159.086,0,-75.781	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/1:60:32,28:32:1114:28:1000:-72.2536,0,-82.5014	0/1:44:26,18:26:906:18:644:-45.0453,0,-68.6081	0/0:11:11,0:11:371:0:0:0,-3.31133,-33.7152	0/1:86:29,57:29:1044:57:2031:-157.173,0,-68.3862	0/1:48:23,25:23:815:25:892:-66.1502,0,-59.2213	0/0:124:124,0:124:4367:0:0:0,-37.3277,-393.209	0/1:114:66,48:66:2310:48:1724:-121.128,0,-173.841	0/1:91:40,51:40:1410:51:1828:-137.407,0,-99.802	0/0:66:66,0:66:2307:0:0:0,-19.868,-207.889	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/0:112:111,1:111:3903:1:36:0,-30.1171,-347.866	0/0:208:208,0:208:7344:0:0:0,-62.6142,-661.015	0/1:69:34,35:34:1173:35:1238:-90.9518,0,-85.0982	0/1:33:14,18:14:504:18:644:-48.3357,0,-35.7425	0/0:40:40,0:40:1374:0:0:0,-12.0412,-123.952	0/1:106:56,50:56:1942:50:1771:-127.763,0,-143.146	0/0:41:41,0:41:1424:0:0:0,-12.3422,-128.453	0/0:63:63,0:63:2206:0:0:0,-18.9649,-198.805	0/0:42:42,0:42:1457:0:0:0,-12.6433,-131.422	0/1:27:11,16:11:388:16:576:-44.0472,0,-27.1296	0/1:91:41,50:41:1415:50:1778:-132.908,0,-100.248	0/1:69:26,43:26:895:43:1518:-116.141,0,-60.0887	0/0:74:74,0:74:2583:0:0:0,-22.2762,-232.717	0/0:58:58,0:58:2017:0:0:0,-17.4597,-181.802
chr07	278153	.	C	T	47089.3	PASS	AB=0.523487;ABP=22.7986;AC=48;AF=0.255319;AN=188;AO=2167;CIGAR=1X;DP=7326;DPB=7326;DPRA=1.26281;EPP=905.47;EPPR=1818.78;GTI=0;LEN=1;MEANALT=1;MQM=52.0512;MQMR=53.1115;NS=94;NUMALT=1;ODDS=4.01038;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76822;QR=181809;RO=5159;RPL=2167;RPP=4708.59;RPPR=11205.6;RPR=0;RUN=1;SAF=1558;SAP=905.47;SAR=609;SRF=3618;SRP=1818.78;SRR=1541;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:16,13:16:572:13:468:-33.4344,0,-42.9584	0/1:30:16,14:16:572:14:491:-35.2045,0,-42.6611	0/1:48:18,30:18:644:30:1048:-79.537,0,-43.5906	0/1:63:33,30:33:1117:30:1042:-75.0027,0,-81.6306	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.7753	0/0:23:23,0:23:824:0:0:0,-6.92369,-73.8685	0/1:39:15,24:15:531:24:845:-64.5165,0,-36.1703	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.556	0/0:36:36,0:36:1288:0:0:0,-10.8371,-114.573	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.6618	0/0:292:292,0:292:10273:0:0:0,-87.9008,-920.992	0/1:125:61,64:61:2117:64:2279:-166.509,0,-152.489	0/1:58:31,27:31:1099:27:959:-68.9514,0,-81.3143	0/1:76:40,36:40:1416:36:1288:-92.4216,0,-104.66	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.634	0/1:70:30,40:30:1057:40:1419:-106.362,0,-74.2042	0/1:60:29,31:29:1027:31:1104:-81.3426,0,-74.4618	0/1:21:14,7:14:500:7:252:-16.6494,0,-38.7875	0/0:130:130,0:130:4549:0:0:0,-39.1339,-406.39	0/0:53:53,0:53:1873:0:0:0,-15.9546,-168.747	0/0:60:60,0:60:2114:0:0:0,-18.0618,-190.345	0/1:15:7,8:7:248:8:288:-21.0262,0,-18.1363	0/1:29:10,19:10:345:19:676:-52.2196,0,-22.6172	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.821	0/1:28:14,14:14:504:14:495:-36.3263,0,-37.229	0/0:66:66,0:66:2324:0:0:0,-19.868,-209.201	0/1:74:30,44:30:1067:44:1559:-117.787,0,-73.7356	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.2481	0/1:77:44,33:44:1556:33:1184:-83.5517,0,-116.915	0/1:18:10,8:10:360:8:279:-19.9645,0,-27.2506	0/1:31:13,18:13:464:18:639:-48.417,0,-32.6226	0/0:82:81,1:81:2855:1:36:0,-21.3383,-252.792	0/0:92:92,0:92:3231:0:0:0,-27.6948,-288.239	0/0:178:178,0:178:6270:0:0:0,-53.5833,-559.904	0/0:78:78,0:78:2736:0:0:0,-23.4803,-244.921	0/1:199:83,116:83:2923:116:4098:-307.505,0,-201.283	0/1:151:73,78:73:2600:78:2796:-206.228,0,-188.563	0/0:13:13,0:13:455:0:0:0,-3.91339,-40.9558	0/0:231:231,0:231:8085:0:0:0,-69.5379,-721.236	0/1:102:47,55:47:1638:55:1945:-143.872,0,-116.139	0/1:42:21,21:21:730:21:756:-55.2442,0,-53.2832	0/1:120:61,59:61:2134:59:2103:-152.316,0,-154.7	0/0:47:47,0:47:1659:0:0:0,-14.1484,-149.185	0/0:67:67,0:67:2378:0:0:0,-20.169,-213.681	0/0:57:57,0:57:1991:0:0:0,-17.1587,-179.105	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.899	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.7033	0/0:51:51,0:51:1815:0:0:0,-15.3525,-162.937	0/1:26:10,16:10:343:16:576:-43.9316,0,-23.3555	0/1:45:14,31:14:500:31:1093:-84.9077,0,-31.7471	0/1:64:33,31:33:1184:31:1103:-79.9296,0,-87.5088	0/0:109:108,1:108:3802:1:36:0,-29.3887,-337.032	0/0:32:32,0:32:1120:0:0:0,-9.63296,-100.771	0/1:28:18,10:18:625:10:360:-24.2345,0,-48.1146	0/0:47:47,0:47:1593:0:0:0,-14.1484,-142.713	0/1:39:18,21:18:648:21:728:-53.7151,0,-46.6086	0/1:22:13,9:13:447:9:309:-21.4697,0,-33.9055	0/1:156:72,84:72:2537:84:2980:-220.899,0,-180.847	0/0:53:53,0:53:1857:0:0:0,-15.9546,-167.072	0/1:35:11,24:11:396:24:852:-66.1565,0,-25.3493	0/0:100:99,1:99:3501:1:36:0,-26.5116,-311.049	0/0:71:71,0:71:2498:0:0:0,-21.3731,-224.161	0/1:62:26,36:26:924:36:1296:-98.1254,0,-64.8134	0/0:49:49,0:49:1740:0:0:0,-14.7505,-156.627	0/1:24:10,14:10:360:14:500:-37.5159,0,-25.472	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.662	0/1:60:22,38:22:784:38:1351:-103.67,0,-51.5206	0/1:45:19,26:19:676:26:924:-69.6557,0,-47.3076	0/1:443:233,210:233:8169:210:7415:-527.328,0,-597.035	0/1:23:10,13:10:336:13:449:-33.7199,0,-23.5879	0/1:65:33,32:33:1188:32:1140:-83.1637,0,-87.6096	0/0:124:124,0:124:4366:0:0:0,-37.3277,-390.799	0/1:14:12,2:12:432:2:63:-1.75905,0,-34.9185	0/1:29:13,16:13:464:16:576:-43.3139,0,-33.2684	0/0:83:83,0:83:2904:0:0:0,-24.9855,-260.519	0/1:40:17,23:17:612:23:828:-62.6479,0,-43.3365	0/1:44:14,30:14:504:30:1068:-82.7373,0,-32.2935	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.4214	0/0:94:94,0:94:3339:0:0:0,-28.2968,-297.366	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.1413	0/0:26:26,0:26:909:0:0:0,-7.82678,-81.7627	0/0:57:56,1:56:2004:1:28:0,-14.4225,-177.566	0/1:53:35,18:35:1237:18:644:-42.2361,0,-95.5793	0/1:68:34,34:34:1193:34:1212:-88.5412,0,-86.8387	0/0:56:56,0:56:1986:0:0:0,-16.8577,-177.897	0/1:122:70,52:70:2487:52:1836:-128.257,0,-186.961	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.7031	0/0:92:92,0:92:3260:0:0:0,-27.6948,-292.278	0/0:79:79,0:79:2824:0:0:0,-23.7814,-253.349	0/1:360:161,199:161:5655:199:7069:-523.53,0,-397.282	0/1:676:327,349:327:11402:349:12310:-897.415,0,-816.085	0/1:82:27,55:27:936:55:1964:-150.901,0,-59.7713	0/0:65:64,1:64:2285:1:27:0,-16.868,-203.194	0/0:115:115,0:115:4038:0:0:0,-34.6184,-362.832
chr07	282021	.	A	G	15794.6	PASS	AB=0.26963;ABP=2492.22;AC=44;AF=0.234043;AN=188;AO=1469;CIGAR=1X;DP=11499;DPB=11499;DPRA=1.41459;EPP=3158.25;EPPR=21626.8;GTI=9;LEN=1;MEANALT=1;MQM=59.9816;MQMR=59.9819;NS=94;NUMALT=1;ODDS=0.175976;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52407;QR=359772;RO=10030;RPL=1465;RPP=3158.25;RPPR=21626.8;RPR=4;RUN=1;SAF=1469;SAP=3192.9;SAR=0;SRF=10030;SRP=21782.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:23,13:23:824:13:468:-31.6226,0,-63.6462	0/0:134:134,0:134:4801:0:0:0,-40.338,-432.243	0/0:144:144,0:144:5168:0:0:0,-43.3483,-465.259	0/0:180:178,2:178:6389:2:72:0,-47.3487,-568.258	0/0:136:136,0:136:4865:0:0:0,-40.9401,-438.002	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:102:68,34:68:2440:34:1220:-79.4017,0,-189.15	0/0:289:288,1:288:10360:1:36:0,-83.3994,-928.559	0/1:167:139,28:139:4984:28:992:-39.3224,0,-398.434	0/0:157:157,0:157:5632:0:0:0,-47.2617,-506.999	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:57:57,0:57:2034:0:0:0,-17.1587,-183.331	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:65:50,15:50:1792:15:540:-29.3696,0,-141.996	0/1:50:32,18:32:1152:18:635:-42.4255,0,-88.9386	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:55:42,13:42:1512:13:449:-24.1808,0,-119.818	0/1:38:25,13:25:900:13:468:-31.0205,0,-69.8819	0/1:148:115,33:115:4109:33:1188:-62.6762,0,-325.441	0/1:187:148,39:148:5312:39:1400:-70.0066,0,-421.919	0/1:138:66,72:66:2360:72:2588:-191.626,0,-171.117	0/1:105:79,26:79:2836:26:932:-52.5907,0,-223.87	0/0:201:194,7:194:6941:7:248:0,-37.8428,-602.09	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:772:605,167:605:21713:167:5922:-300.696,0,-1720.72	0/1:192:122,70:122:4392:70:2504:-167.815,0,-337.653	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:193:157,36:157:5644:36:1296:-58.8451,0,-449.979	0/1:153:127,26:127:4552:26:936:-38.5015,0,-363.788	0/0:143:143,0:143:5132:0:0:0,-43.0473,-462.02	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:186:186,0:186:6684:0:0:0,-55.9916,-601.633	0/0:602:601,1:601:21552:1:36:0,-177.622,-1935.19	0/1:52:42,10:42:1508:10:351:-16.2731,0,-120.361	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:141:102,39:102:3668:39:1400:-83.854,0,-287.877	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:294:226,68:226:8112:68:2415:-129.104,0,-641.583	0/1:75:55,20:55:1958:20:707:-41.3773,0,-153.917	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/1:174:142,32:142:5077:32:1148:-51.2506,0,-404.694	0/1:200:166,34:166:5933:34:1220:-49.9008,0,-473.872	0/1:332:238,94:238:8524:94:3333:-200.246,0,-667.217	0/0:120:120,0:120:4316:0:0:0,-36.1236,-388.614	0/0:136:136,0:136:4860:0:0:0,-40.9401,-437.327	0/0:172:172,0:172:6176:0:0:0,-51.7772,-555.936	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:212:167,45:167:6004:45:1607:-81.101,0,-476.635	0/1:42:28,14:28:1004:14:504:-33.0548,0,-78.0326	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:77:76,1:76:2728:1:36:0,-19.581,-242.164	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:114:66,48:66:2368:48:1698:-118.784,0,-179.061	0/0:168:168,0:168:6022:0:0:0,-50.573,-542.082	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:235:150,85:150:5388:85:3052:-204.167,0,-414.307	0/0:340:339,1:339:12147:1:36:0,-98.7519,-1089.48	0/1:68:52,16:52:1860:16:572:-31.3434,0,-147.21	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.437	0/1:211:146,65:146:5247:65:2319:-145.453,0,-408.847	0/1:63:34,29:34:1212:29:1036:-74.589,0,-90.4214	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:114:114,0:114:4081:0:0:0,-34.3174,-367.474	0/1:25:18,7:18:648:7:252:-15.5032,0,-51.1261	0/0:150:150,0:150:5365:0:0:0,-45.1545,-482.981	0/1:61:39,22:39:1396:22:783:-52.4301,0,-107.576	0/0:265:265,0:265:9504:0:0:0,-79.7729,-855.287	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.213	0/1:217:147,70:147:5241:70:2495:-159.48,0,-406.496	0/1:118:80,38:80:2880:38:1360:-87.1791,0,-223.914	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:142:142,0:142:5112:0:0:0,-42.7463,-460.219	0/0:179:179,0:179:6420:0:0:0,-53.8844,-577.886	0/0:382:382,0:382:13703:0:0:0,-114.993,-1233	0/0:145:145,0:145:5194:0:0:0,-43.6493,-467.597	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:65:56,9:56:1998:9:319:-9.48462,0,-160.525	0/0:107:107,0:107:3839:0:0:0,-32.2102,-345.705	0/1:56:39,17:39:1404:17:594:-36.9269,0,-109.802	0/1:87:63,24:63:2268:24:851:-50.7198,0,-178.192	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:68:38,30:38:1368:30:1065:-75.6897,0,-102.951	0/1:42:29,13:29:1025:13:464:-29.4542,0,-79.9174	0/0:152:152,0:152:5464:0:0:0,-45.7566,-491.885	0/0:120:120,0:120:4320:0:0:0,-36.1236,-388.974
chr07	282163	.	G	A	51367.9	PASS	AB=0.393514;ABP=844.233;AC=93;AF=0.494681;AN=188;AO=3368;CIGAR=1X;DP=8576;DPB=8576;DPRA=46.0968;EPP=7299.17;EPPR=11201.5;GTI=11;LEN=1;MEANALT=1.03226;MQM=59.9982;MQMR=59.9981;NS=94;NUMALT=1;ODDS=3.65959;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120665;QR=186029;RO=5205;RPL=3366;RPP=7299.17;RPPR=11201.5;RPR=2;RUN=1;SAF=0;SAP=7316.53;SAR=3368;SRF=0;SRP=11305.5;SRR=5205;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:54,14:54:1910:14:496:-24.5042,0,-151.706	0/1:54:19,35:19:680:35:1251:-96.6393,0,-45.2735	0/1:146:62,84:62:2220:84:3016:-227.72,0,-156.114	0/1:180:67,113:67:2403:113:4018:-307.622,0,-162.34	0/1:107:71,36:71:2539:36:1292:-84.3736,0,-196.55	0/1:87:60,27:60:2147:27:972:-61.6083,0,-167.307	0/1:60:41,19:41:1472:19:672:-42.7445,0,-114.714	0/1:186:104,82:104:3732:82:2948:-209.561,0,-280.088	0/1:96:78,18:78:2778:18:644:-29.3917,0,-221.362	0/1:75:43,32:43:1548:32:1148:-81.0526,0,-117.036	0/1:26:14,12:14:504:12:424:-30.6696,0,-37.8713	0/1:63:35,28:35:1256:28:1008:-72.0715,0,-94.3804	0/1:55:20,35:20:711:35:1260:-97.1488,0,-47.759	0/1:43:16,27:16:572:27:972:-74.8536,0,-38.8691	0/1:71:58,13:58:2088:13:468:-21.0865,0,-166.817	0/1:32:19,13:19:671:13:468:-32.8267,0,-51.0828	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/1:24:21,3:21:738:3:108:-2.85045,0,-59.5167	0/1:180:131,49:131:4673:49:1760:-104.498,0,-366.546	0/1:143:112,31:112:4007:31:1112:-57.3441,0,-317.772	0/1:124:92,32:92:3291:32:1152:-66.6624,0,-259.081	0/1:88:59,29:59:2104:29:1025:-66.0701,0,-163.139	0/1:54:38,16:38:1351:16:576:-35.9194,0,-105.634	0/1:71:15,56:15:528:56:1993:-158.269,0,-26.4782	0/1:415:320,94:320:11446:94:3361:-177.719,0,-905.03	0/1:216:157,59:157:5603:59:2120:-126.046,0,-439.371	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/1:218:144,74:144:5149:74:2651:-173.211,0,-397.925	0/1:107:75,32:75:2687:32:1148:-71.4196,0,-209.864	0/1:106:27,79:27:972:79:2844:-224.288,0,-55.8887	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	0/0:28:26,2:26:923:2:72:0,-1.59212,-76.55	0/1:119:45,74:45:1604:74:2646:-202.563,0,-108.828	0/1:213:98,115:98:3499:115:4128:-307.584,0,-251.001	0/1:45:34,11:34:1216:11:396:-22.4364,0,-96.2002	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:124:86,38:86:3075:38:1368:-86.0931,0,-239.65	0/1:29:11,18:11:396:18:648:-49.922,0,-27.2529	0/1:272:229,43:229:8164:43:1535:-56.5622,0,-652.894	0/1:41:32,9:32:1144:9:324:-17.1636,0,-90.9273	0/1:45:15,30:15:540:30:1050:-81.2616,0,-35.3902	0/1:138:103,35:103:3688:35:1260:-72.1633,0,-290.581	0/1:140:106,34:106:3796:34:1204:-66.5216,0,-299.694	0/1:253:205,48:205:7301:48:1716:-78.565,0,-580.982	0/1:123:43,80:43:1544:80:2876:-222.049,0,-102.226	0/1:111:33,77:33:1176:77:2749:-214.325,0,-72.8202	0/1:143:61,82:61:2188:82:2935:-221.336,0,-154.138	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:157:116,41:116:4130:41:1467:-85.0636,0,-324.621	0/1:54:36,18:36:1296:18:644:-42.035,0,-100.688	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:85:41,44:41:1457:44:1572:-116.184,0,-105.836	0/1:33:13,20:13:468:20:720:-55.1948,0,-32.5257	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/1:56:45,11:45:1605:11:381:-17.7583,0,-127.88	0/1:124:60,64:60:2152:64:2292:-169.214,0,-156.619	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:168:118,50:118:4198:50:1800:-111.709,0,-327.427	0/1:223:128,95:128:4557:95:3416:-240.523,0,-343.167	0/1:70:57,13:57:2044:13:468:-21.3875,0,-163.16	0/1:80:42,38:42:1512:38:1364:-98.9783,0,-112.292	0/1:109:78,31:78:2788:31:1112:-67.5791,0,-218.349	0/1:195:139,56:139:5000:56:2000:-121.573,0,-391.444	0/1:10:7,2:7:252:2:72:-3.76762,0,-19.9599	0/1:45:29,16:29:1040:16:576:-38.6286,0,-80.368	0/1:51:20,31:20:720:31:1116:-85.3992,0,-49.7762	0/1:29:21,8:21:747:8:278:-16.6265,0,-58.8244	0/1:189:74,115:74:2634:115:4109:-313.1,0,-180.412	0/1:70:50,20:50:1787:20:720:-44.0567,0,-140.04	0/1:169:86,83:86:3083:83:2976:-217.198,0,-226.823	0/1:117:42,75:42:1512:75:2692:-207.304,0,-101.154	0/1:126:85,41:85:3024:41:1472:-94.8464,0,-234.46	0/1:85:63,22:63:2247:22:788:-45.6572,0,-176.905	0/1:15:13,2:13:464:2:72:-2.32127,0,-37.5821	0/1:131:67,64:67:2404:64:2300:-167.826,0,-177.182	0/1:147:82,65:82:2922:65:2336:-166.248,0,-218.963	0/1:236:120,116:120:4296:116:4144:-302.099,0,-315.774	0/1:61:23,38:23:816:38:1368:-105.058,0,-55.3989	0/1:35:14,21:14:500:21:752:-57.4702,0,-34.8001	0/1:29:25,4:25:888:4:144:-4.58375,0,-71.5092	0/1:70:29,41:29:1040:41:1476:-112.064,0,-72.8423	0/1:31:23,8:23:815:8:284:-16.5714,0,-64.3388	0/1:65:51,14:51:1828:14:504:-26.1311,0,-145.234	0/1:52:28,24:28:1000:24:864:-62.429,0,-74.6618	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	0/1:72:52,20:52:1860:20:716:-43.0936,0,-146.005	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	0/1:192:100,92:100:3578:92:3296:-239.061,0,-264.428	0/1:82:41,41:41:1455:41:1468:-107.732,0,-106.561
chr07	306335	.	T	G	79193.7	PASS	AB=0.540048;ABP=55.7094;AC=140;AF=0.752688;AN=186;AO=5508;CIGAR=1X;DP=7254;DPB=7254;DPRA=0;EPP=11773.2;EPPR=3781.37;GTI=0;LEN=1;MEANALT=1.05376;MQM=29.1344;MQMR=41.6707;NS=93;NUMALT=1;ODDS=6.15274;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196995;QR=62422;RO=1740;RPL=22;RPP=11773.2;RPPR=3781.37;RPR=5486;RUN=1;SAF=5508;SAP=11963.5;SAR=0;SRF=1740;SRP=3781.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:12,9:12:424:9:305:-16.0078,0,-31.1609	0/1:157:52,105:52:1872:105:3752:-219.756,0,-115.263	0/1:87:39,47:39:1400:47:1672:-93.0041,0,-96.4564	0/1:208:68,140:68:2448:140:5032:-292.46,0,-150.645	1/1:28:0,28:0:0:28:1000:-71.1975,-8.42884,0	1/1:28:0,28:0:0:28:1008:-71.3734,-8.42884,0	0/1:77:40,37:40:1428:37:1324:-70.8691,0,-101.485	1/1:92:0,92:0:0:92:3292:-233.429,-27.6948,0	1/1:51:0,51:0:0:51:1809:-128.799,-15.3525,0	1/1:180:0,180:0:0:180:6421:-455.958,-54.1854,0	1/1:63:0,63:0:0:63:2252:-159.886,-18.9649,0	0/1:84:47,37:47:1692:37:1324:-68.7619,0,-122.376	0/1:52:24,28:24:856:28:1008:-55.7198,0,-59.7834	0/1:81:41,40:41:1472:40:1436:-77.3698,0,-102.354	1/1:63:0,63:0:0:63:2260:-160.136,-18.9649,0	0/1:57:29,28:29:1040:28:1004:-54.1267,0,-73.6514	0/1:96:48,48:48:1705:48:1720:-93.0783,0,-120.845	0/1:44:24,20:24:860:20:716:-38.4306,0,-61.9353	1/1:55:0,55:0:0:55:1965:-139.218,-16.5567,0	1/1:124:0,123:0:0:123:4412:-311.512,-37.0267,0	1/1:133:0,133:0:0:133:4745:-336.789,-40.037,0	0/1:64:42,22:42:1504:22:780:-36.6673,0,-112.014	0/1:44:23,21:23:828:21:756:-40.3552,0,-59.5393	1/1:107:0,107:0:0:107:3812:-271.075,-32.2102,0	0/1:35:19,16:19:684:16:568:-30.1932,0,-49.7104	1/1:310:0,310:0:0:310:11101:-786.279,-93.3193,0	0/1:152:66,86:66:2368:86:3084:-172.688,0,-160.868	1/1:38:0,38:0:0:38:1364:-96.6752,-11.4391,0	0/1:110:44,66:44:1584:66:2349:-133.918,0,-105.092	0/1:94:38,56:38:1364:56:2000:-113.817,0,-91.3837	0/1:75:27,48:27:964:48:1709:-98.8378,0,-60.4891	1/1:6:0,6:0:0:6:197:-14.7076,-1.80618,0	1/1:12:0,12:0:0:12:432:-30.7498,-3.61236,0	1/1:7:0,7:0:0:7:248:-17.9659,-2.10721,0	1/1:14:0,14:0:0:14:504:-35.8277,-4.21442,0	0/1:6:5,1:5:180:1:36:-1.0149,0,-14.3062	0/1:202:93,109:93:3348:109:3908:-215.743,0,-231.946	1/1:123:0,123:0:0:123:4405:-311.694,-37.0267,0	1/1:52:0,52:0:0:52:1856:-131.958,-15.6536,0	.:.:.:.:.:.:.:.	0/1:126:67,59:67:2412:59:2124:-112.152,0,-172.851	0/1:22:11,11:11:396:11:392:-21.5578,0,-27.7847	1/1:35:0,35:0:0:35:1260:-89.1462,-10.5361,0	1/1:105:0,105:0:0:105:3760:-267.564,-31.6082,0	1/1:52:0,52:0:0:52:1848:-131.84,-15.6536,0	1/1:49:0,49:0:0:49:1745:-124.028,-14.7505,0	1/1:37:0,37:0:0:37:1309:-93.3402,-11.1381,0	1/1:131:0,131:0:0:131:4712:-332.8,-39.4349,0	0/1:83:32,51:32:1144:51:1832:-104.696,0,-74.1529	0/1:136:66,69:66:2356:69:2480:-134.462,0,-163.255	0/1:107:51,54:51:1836:54:1936:-105.321,0,-128.609	1/1:3:0,3:0:0:3:104:-7.80818,-0.90309,0	1/1:80:0,80:0:0:80:2876:-203.312,-24.0824,0	0/1:22:7,15:7:252:15:528:-31.4793,0,-15.7946	1/1:11:0,11:0:0:11:396:-28.2108,-3.31133,0	0/1:80:33,47:33:1184:47:1669:-94.6481,0,-79.7667	0/1:22:9,13:9:324:13:468:-26.6661,0,-22.0995	1/1:3:0,3:0:0:3:108:-7.89903,-0.90309,0	1/1:19:0,19:0:0:19:654:-47.1022,-5.71957,0	0/1:33:14,19:14:504:19:684:-38.5886,0,-34.4083	1/1:114:1,113:1:36:113:4045:-282.801,-30.8147,0	1/1:2:0,2:0:0:2:72:-5.36005,-0.60206,0	0/1:196:95,101:95:3416:101:3601:-197.185,0,-238.44	1/1:158:0,158:0:0:158:5680:-404.334,-47.5627,0	0/1:102:45,57:45:1608:57:2040:-114.035,0,-110.573	1/1:59:0,59:0:0:59:2082:-148.403,-17.7608,0	0/1:136:59,77:59:2124:77:2752:-154.478,0,-144.197	0/1:55:30,25:30:1076:25:900:-47.1998,0,-77.3685	0/1:29:17,12:17:608:12:432:-21.5274,0,-43.9092	0/1:33:9,24:9:316:24:856:-51.1075,0,-18.1612	0/1:73:41,32:41:1468:32:1148:-59.4662,0,-106.389	1/1:16:0,16:0:0:16:576:-40.9057,-4.81648,0	0/1:51:16,35:16:561:35:1252:-73.6179,0,-34.0906	0/1:55:22,33:22:792:33:1184:-67.4237,0,-53.1471	1/1:117:0,117:0:0:117:4181:-296.358,-35.2205,0	0/1:149:71,78:71:2552:78:2796:-153.205,0,-178.468	0/1:32:16,16:16:572:16:568:-31.0963,0,-40.9085	1/1:134:3,131:3:108:131:4678:-321.502,-30.5305,0	1/1:18:0,18:0:0:18:648:-45.9836,-5.41854,0	1/1:85:0,85:0:0:85:3052:-215.682,-25.5876,0	1/1:68:0,68:0:0:68:2432:-172.505,-20.47,0	1/1:195:0,195:0:0:195:6942:-492.917,-58.7009,0	0/1:97:45,51:45:1612:51:1836:-100.589,0,-112.175	0/1:59:35,24:35:1260:24:860:-43.3687,0,-92.9245	1/1:92:1,91:1:36:91:3268:-227.378,-24.0965,0	0/1:145:68,77:68:2440:77:2764:-151.543,0,-169.183	1/1:38:0,38:0:0:38:1356:-96.9041,-11.4391,0	1/1:78:0,78:0:0:78:2771:-198.807,-23.4803,0	1/1:72:0,72:0:0:72:2580:-182.514,-21.6742,0	0/1:40:12,28:12:432:28:996:-59.0683,0,-26.1382	0/1:79:40,39:40:1436:39:1396:-75.4556,0,-102.419	0/1:75:43,32:43:1540:32:1132:-58.0228,0,-111.358	1/1:130:0,130:0:0:130:4664:-341.465,-39.1339,0	1/1:84:0,84:0:0:84:3004:-213.117,-25.2865,0
chr07	313208	.	GA	GT,AT	205121	PASS	AB=0.487186,0.508946;ABP=8.9094,5.8853;AC=138,48;AF=0.741935,0.258065;AN=186;AO=5768,2116;CIGAR=1M1X,2X;DP=7904;DPB=7904;DPRA=0,1.35592;EPP=2654.75,1318.03;EPPR=0;GTI=0;LEN=1,2;MEANALT=1.7957,2.29091;MQM=59.9227,54.172;MQMR=0;NS=93;NUMALT=2;ODDS=2.52879;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=204558,73881;QR=0;RO=0;RPL=4213,1624;RPP=2662.75,1318.03;RPPR=0;RPR=1555,492;RUN=1,1;SAF=2,0;SAP=12510.7,4597.85;SAR=5766,2116;SRF=0;SRP=0;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:63:0,27,36:0:0:27,36:960,1267:-181.443,-103.208,-95.0801,-78.5885,0,-67.7514	1/2:153:0,80,73:0:0:80,73:2834,2568:-439.532,-208.671,-184.589,-231.213,0,-209.237	1/2:45:0,21,24:0:0:21,24:737,826:-126.994,-67.0122,-60.6906,-60.329,0,-53.1043	1/2:105:0,50,55:0:0:50,55:1784,1907:-300.434,-155.08,-140.029,-145.705,0,-129.148	1/1:85:0,85,0:0:0:85,0:2990,0:-269.332,-25.5876,0,-269.332,-25.5876,-269.332	1/1:89:0,89,0:0:0:89,0:3157,0:-284.356,-26.7917,0,-284.356,-26.7917,-284.356	1/2:159:0,62,97:0:0:62,97:2185,3327:-447.99,-270.088,-251.424,-178.251,0,-149.051	1/1:185:0,185,0:0:0:185,0:6542,0:-588.859,-55.6906,0,-588.859,-55.6906,-588.859	1/1:67:0,66,0:0:0:66,0:2336,0:-210.28,-19.868,0,-210.28,-19.868,-210.28	1/1:118:0,118,0:0:0:118,0:4188,0:-377.099,-35.5215,0,-377.099,-35.5215,-377.099	1/1:51:0,51,0:0:0:51,0:1811,0:-163.257,-15.3525,0,-163.257,-15.3525,-163.257	1/2:61:0,34,27:0:0:34,27:1195,959:-175.548,-78.2815,-68.0465,-97.6194,0,-89.4916	1/2:64:0,41,23:0:0:41,23:1445,795:-181.467,-63.8096,-51.4673,-118.002,0,-111.078	1/2:71:0,35,36:0:0:35,36:1260,1272:-206.331,-103.517,-92.9813,-103.169,0,-92.3324	1/1:50:0,50,0:0:0:50,0:1788,0:-161.203,-15.0515,0,-161.203,-15.0515,-161.203	1/2:48:0,26,22:0:0:26,22:896,784:-136.796,-64.0224,-56.1957,-73.1239,0,-66.5013	1/2:67:0,36,31:0:0:36,31:1288,1052:-190.341,-85.3016,-74.4645,-105.387,0,-96.0546	1/2:69:0,25,43:0:0:25,43:889,1529:-196.383,-123.935,-116.409,-72.4624,0,-59.5181	1/1:34:0,34,0:0:0:34,0:1207,0:-108.935,-10.235,0,-108.935,-10.235,-108.935	1/1:164:0,164,0:0:0:164,0:5816,0:-523.55,-49.3689,0,-523.55,-49.3689,-523.55	1/1:110:0,110,0:0:0:110,0:3932,0:-354.073,-33.1133,0,-354.073,-33.1133,-354.073	1/2:36:0,12,24:0:0:12,24:428,824:-102.05,-67.1556,-63.5432,-35.2464,0,-28.0217	1/2:83:0,32,50:0:0:32,50:1136,1717:-231.644,-139.079,-129.446,-92.5547,0,-77.5032	1/1:122:0,122,0:0:0:122,0:4332,0:-390.056,-36.7257,0,-390.056,-36.7257,-390.056	1/2:77:0,37,40:0:0:37,40:1320,1395:-221.222,-113.611,-102.473,-107.964,0,-95.9226	1/1:196:0,194,2:0:0:194,2:6879,72:-618.818,-58.3998,0,-612.945,-52.1671,-612.343	1/2:163:0,91,71:0:0:91,71:3248,2497:-467.143,-202.618,-175.224,-264.519,0,-243.146	1/1:33:0,33,0:0:0:33,0:1180,0:-106.508,-9.93399,0,-106.508,-9.93399,-106.508	1/2:89:0,44,45:0:0:44,45:1576,1569:-256.316,-127.783,-114.538,-128.886,0,-115.34	1/2:128:0,60,67:0:0:60,67:2125,2361:-364.085,-190.987,-172.925,-173.091,0,-152.922	1/2:101:0,37,64:0:0:37,64:1312,2237:-288.677,-181.786,-170.648,-107.244,0,-87.9776	1/1:9:0,9,0:0:0:9,0:301,0:-27.4137,-2.70927,0,-27.4137,-2.70927,-27.4137	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:2:0,2,0:0:0:2,0:67,0:-6.36304,-0.60206,0,-6.36304,-0.60206,-6.36304	1/1:2:0,2,0:0:0:2,0:72,0:-6.63658,-0.60206,0,-6.63658,-0.60206,-6.63658	1/2:8:0,6,2:0:0:6,2:216,72:-23.8427,-6.21747,-4.41129,-17.9843,0,-17.3823	1/2:187:0,88,99:0:0:88,99:3148,3508:-542.466,-285.767,-259.276,-257.055,0,-227.253	1/1:117:0,116,1:0:0:116,1:4084,36:-367.382,-34.9195,0,-364.444,-31.6222,-364.143	1/1:51:0,51,0:0:0:51,0:1823,0:-164.331,-15.3525,0,-164.331,-15.3525,-164.331	.:.:.:.:.:.:.:.	1/2:122:0,61,61:0:0:61,61:2176,2119:-349.502,-172.24,-153.877,-177.614,0,-159.251	1/2:25:0,11,14:0:0:11,14:392,500:-73.013,-41.0606,-37.7492,-32.3087,0,-28.0943	1/1:180:0,179,0:0:0:179,0:6358,0:-571.965,-53.8844,0,-571.965,-53.8844,-571.965	1/1:73:0,73,0:0:0:73,0:2616,0:-235.688,-21.9752,0,-235.688,-21.9752,-235.688	1/1:56:0,55,0:0:0:55,0:1952,0:-175.596,-16.5567,0,-175.596,-16.5567,-175.596	1/1:108:0,108,0:0:0:108,0:3834,0:-345.258,-32.5112,0,-345.258,-32.5112,-345.258	1/1:68:0,68,0:0:0:68,0:2399,0:-216.165,-20.47,0,-216.165,-20.47,-216.165	1/1:123:0,122,1:0:0:122,1:4310,36:-387.632,-36.7257,0,-384.695,-33.4284,-384.394	1/2:106:0,49,57:0:0:49,57:1741,2005:-305.164,-163.295,-148.545,-142.222,0,-125.063	1/2:193:0,104,89:0:0:104,89:3647,3114:-549.788,-253.007,-221.7,-297.131,0,-270.339	1/2:182:0,85,96:0:0:85,96:3013,3295:-512.711,-267.252,-241.665,-245.448,0,-216.549	1/2:4:0,3,1:0:0:3,1:104,34:-11.556,-3.09788,-2.19479,-8.79971,0,-8.49868	1/1:108:0,108,0:0:0:108,0:3817,0:-343.73,-32.5112,0,-343.73,-32.5112,-343.73	1/2:45:0,13,32:0:0:13,32:434,1135:-127.807,-92.6829,-88.7696,-35.4641,0,-25.8311	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:90:0,58,32:0:0:58,32:2041,1124:-257.465,-91.3142,-73.8545,-166.501,0,-156.868	1/2:44:0,16,28:0:0:16,28:572,980:-126.385,-79.7421,-74.9256,-46.9969,0,-38.5681	1/2:6:0,1,5:0:0:1,5:36,180:-17.9797,-15.0423,-14.7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chr07	313221	.	TGAAA	AGAAA,AGAAT	173466	PASS	AB=0.495035,0.501418;ABP=3.91585,3.08422;AC=139,47;AF=0.747312,0.252688;AN=186;AO=6006,2132;CIGAR=1X4M,1X3M1X;DP=8172;DPB=8172;DPRA=0,1.324;EPP=13044.9,4632.59;EPPR=16.0391;GTI=0;LEN=1,5;MEANALT=1.83871,2.28302;MQM=59.9224,54.1323;MQMR=60;NS=93;NUMALT=2;ODDS=1.9993;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=214829,74922;QR=180;RO=6;RPL=6006,2132;RPP=13044.9,4632.59;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13044.9,4632.59;SAR=6006,2132;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:65:0,29,36:0:0:29,36:1044,1275:-189.11,-103.922,-95.1924,-85.5449,0,-74.7079	1/2:160:0,87,73:0:0:87,73:3120,2561:-462.445,-207.967,-181.777,-254.832,0,-232.857	1/2:48:0,24,24:0:0:24,24:856,832:-137.254,-67.4679,-60.2432,-70.1364,0,-62.9117	1/2:109:0,52,57:0:0:52,57:1861,1984:-313.035,-161.359,-145.705,-152.029,0,-134.871	1/1:88:0,88,0:0:0:88,0:3124,0:-281.386,-26.4906,0,-281.386,-26.4906,-281.386	1/1:95:1,93,0:1:31:93,0:3314,0:-295.408,-25.4773,0,-295.709,-27.9958,-298.197	1/2:160:0,63,95:0:0:63,95:2264,3337:-455.881,-271.179,-252.214,-184.698,0,-156.1	1/1:194:1,193,0:1:30:193,0:6890,0:-617.155,-55.4003,0,-617.456,-58.0988,-619.854	1/1:71:1,68,1:1:36:68,1:2423,22:-214.525,-17.4977,0,-213.149,-18.8261,-215.785	1/1:125:0,125,0:0:0:125,0:4463,0:-401.836,-37.6288,0,-401.836,-37.6288,-401.836	1/1:52:0,52,0:0:0:52,0:1859,0:-167.575,-15.6536,0,-167.575,-15.6536,-167.575	1/2:61:0,33,27:0:0:33,27:1176,953:-173.253,-77.3936,-67.4596,-95.8537,0,-87.7258	1/2:66:0,44,22:0:0:44,22:1580,786:-192.429,-63.5378,-50.2925,-129.246,0,-122.624	1/2:70:0,34,36:0:0:34,36:1220,1283:-203.668,-104.152,-93.9173,-99.8718,0,-89.0347	1/1:52:0,50,0:0:0:50,0:1796,0:-161.563,-15.0515,0,-161.563,-15.0515,-161.563	1/2:47:0,25,22:0:0:25,22:888,784:-136.358,-64,-56.4742,-72.7133,0,-66.0906	1/2:67:0,36,31:0:0:36,31:1296,1094:-194.675,-88.923,-78.0859,-106.107,0,-96.7749	1/2:70:0,26,44:0:0:26,44:936,1557:-202.891,-126.515,-118.688,-76.7327,0,-63.4874	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/1:174:0,173,0:0:0:173,0:6211,0:-558.864,-52.0782,0,-558.864,-52.0782,-558.864	1/1:116:0,116,0:0:0:116,0:4130,0:-371.883,-34.9195,0,-371.883,-34.9195,-371.883	1/2:37:0,13,24:0:0:13,24:464,837:-106.144,-68.314,-64.4006,-38.1841,0,-30.9594	1/2:89:0,38,51:0:0:38,51:1332,1791:-253.853,-145.465,-134.026,-108.738,0,-93.3856	1/1:125:0,125,0:0:0:125,0:4480,0:-403.312,-37.6288,0,-403.312,-37.6288,-403.312	1/2:81:0,40,41:0:0:40,41:1440,1423:-233.311,-115.808,-103.767,-117.857,0,-105.514	1/1:202:0,200,2:0:0:200,2:7167,72:-644.72,-60.206,0,-638.847,-53.9732,-638.245	1/2:164:0,92,72:0:0:92,72:3300,2553:-476.878,-207.714,-180.02,-269.519,0,-247.845	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/2:88:0,42,45:0:0:42,45:1512,1576:-251.398,-128.021,-115.378,-123.43,0,-109.884	1/2:137:0,69,68:0:0:69,68:2453,2393:-394.087,-194.192,-173.421,-200.248,0,-179.778	1/2:104:0,40,64:0:0:40,64:1436,2248:-299.29,-182.149,-170.107,-117.496,0,-98.2305	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:3:0,3,0:0:0:3,0:100,0:-9.32986,-0.90309,0,-9.32986,-0.90309,-9.32986	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:10:0,7,3:0:0:7,3:252,100:-28.9895,-8.40853,-6.30132,-20.9217,0,-20.0187	1/2:192:0,91,101:0:0:91,101:3244,3532:-551.465,-287.029,-259.635,-264.789,0,-234.385	1/1:123:0,120,0:0:0:120,0:4299,0:-386.78,-36.1236,0,-386.78,-36.1236,-386.78	1/1:54:0,54,0:0:0:54,0:1923,0:-173.329,-16.2556,0,-173.329,-16.2556,-173.329	.:.:.:.:.:.:.:.	1/2:120:0,58,61:0:0:58,61:2039,2120:-337.837,-172.136,-154.676,-165.828,0,-147.465	1/2:25:0,11,14:0:0:11,14:387,497:-72.2921,-40.7904,-37.479,-31.8546,0,-27.6402	1/1:192:0,192,0:0:0:192,0:6875,0:-618.808,-57.7978,0,-618.808,-57.7978,-618.808	1/1:74:0,74,0:0:0:74,0:2655,0:-238.924,-22.2762,0,-238.924,-22.2762,-238.924	1/1:60:0,60,0:0:0:60,0:2136,0:-192.508,-18.0618,0,-192.508,-18.0618,-192.508	1/1:109:0,108,0:0:0:108,0:3868,0:-348.034,-32.5112,0,-348.034,-32.5112,-348.034	1/1:70:0,70,0:0:0:70,0:2503,0:-225.519,-21.0721,0,-225.519,-21.0721,-225.519	1/1:128:0,128,0:0:0:128,0:4582,0:-412.544,-38.5318,0,-412.544,-38.5318,-412.544	1/2:110:0,52,58:0:0:52,58:1872,2021:-316.965,-164.213,-148.56,-153.106,0,-135.646	1/2:197:0,108,89:0:0:108,89:3867,3141:-570.831,-255.473,-222.962,-315.713,0,-288.921	1/2:186:0,86,97:0:0:86,97:3084,3384:-526.627,-275.086,-249.198,-251.617,0,-222.417	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:113:0,113,0:0:0:113,0:4048,0:-364.507,-34.0164,0,-364.507,-34.0164,-364.507	1/2:45:0,13,32:0:0:13,32:451,1116:-127.64,-90.9814,-87.068,-37.0059,0,-27.3729	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:89:0,57,32:0:0:57,32:2032,1104:-255.193,-89.5475,-72.3888,-165.994,0,-156.361	1/2:47:0,18,29:0:0:18,29:631,1008:-133.355,-82.0064,-76.5878,-51.6971,0,-42.9673	1/2:6:0,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chr07	342379	.	T	C	24167.9	PASS	AB=0.502194;ABP=3.14372;AC=49;AF=0.260638;AN=188;AO=1611;CIGAR=1X;DP=5871;DPB=5871;DPRA=1.22805;EPP=3501.25;EPPR=9240.46;GTI=1;LEN=1;MEANALT=1.03774;MQM=39.8256;MQMR=58.5599;NS=94;NUMALT=1;ODDS=0.759986;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57090;QR=152104;RO=4258;RPL=0;RPP=3501.25;RPPR=9249.14;RPR=1611;RUN=1;SAF=0;SAP=3501.25;SAR=1611;SRF=1;SRP=9240.46;SRR=4257;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:34,19:34:1224:19:646:-40.9658,0,-94.3317	0/1:41:22,19:22:777:19:668:-46.323,0,-57.487	0/1:80:46,34:46:1652:34:1200:-80.9754,0,-124.46	0/1:120:56,64:56:2003:64:2270:-158.483,0,-144.418	0/0:45:45,0:45:1620:0:0:0,-13.5463,-145.982	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8517	0/1:39:15,24:15:514:24:860:-61.3572,0,-34.6668	0/0:67:67,0:67:2387:0:0:0,-20.169,-214.561	0/0:103:101,2:101:3606:2:72:0,-24.1918,-317.517	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.433	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.394	0/1:105:49,56:49:1743:56:2000:-141.626,0,-125.474	0/1:90:46,44:46:1648:44:1567:-109.103,0,-121.309	0/1:49:32,17:32:1132:17:608:-38.184,0,-87.3894	0/0:105:105,0:105:3749:0:0:0,-31.6081,-337.502	0/1:57:31,26:31:1108:26:903:-61.7739,0,-82.7698	0/1:20:9,11:9:324:11:388:-28.1824,0,-23.4712	0/1:27:8,19:8:288:19:676:-51.1388,0,-18.1271	0/0:20:19,1:19:667:1:36:0,-2.43755,-56.6168	0/0:112:112,0:112:4028:0:0:0,-33.7154,-362.515	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.936	0/1:81:34,47:34:1207:47:1651:-117.66,0,-84.5518	0/1:61:37,24:37:1332:24:855:-55.9285,0,-101.686	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4544	0/1:50:29,21:29:1040:21:733:-46.1933,0,-78.8296	0/0:167:167,0:167:5988:0:0:0,-50.272,-538.924	0/1:166:58,108:58:2084:108:3830:-281.273,0,-137.606	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.615	0/1:153:88,65:88:3160:65:2315:-151.464,0,-238.396	0/1:83:42,41:42:1499:41:1459:-100.395,0,-110.101	0/1:55:29,26:29:1044:26:904:-61.5401,0,-77.704	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.025	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.8881	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19863	0/1:3:1,2:1:36:2:72:-5.71023,0,-2.69347	0/1:197:92,105:92:3291:105:3705:-258.717,0,-236.972	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.896	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.113	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	0/1:54:36,18:36:1284:18:648:-40.1502,0,-99.5902	0/1:33:13,19:13:468:19:662:-47.5819,0,-32.475	0/0:80:78,2:78:2783:2:72:0,-17.2827,-243.735	0/0:69:69,0:69:2438:0:0:0,-20.7711,-219.674	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/0:91:91,0:91:3237:0:0:0,-27.3937,-291.06	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.357	0/0:97:97,0:97:3463:0:0:0,-29.1999,-311.649	0/1:83:48,35:48:1712:35:1248:-80.9673,0,-129.343	0/1:89:46,43:46:1652:43:1536:-105.316,0,-122.176	0/1:26:10,16:10:352:16:576:-41.9452,0,-23.5828	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:72:72,0:72:2564:0:0:0,-21.6742,-230.778	0/1:41:22,19:22:788:19:680:-46.2698,0,-58.9026	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0165	0/1:89:53,36:53:1891:36:1265:-83.0911,0,-143.57	0/1:24:15,9:15:536:9:320:-20.5731,0,-40.7179	0/1:4:2,2:2:72:2:72:-4.12229,0,-5.6326	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:28:10,18:10:356:18:648:-48.1044,0,-23.7316	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.027	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9444	0/1:115:65,50:65:2306:50:1756:-114.492,0,-173.165	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.116	0/1:34:15,19:15:536:19:676:-46.4463,0,-38.0619	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.519	0/1:106:57,49:57:2044:49:1728:-116.955,0,-152.232	0/1:86:26,60:26:936:60:2109:-155.695,0,-58.6705	0/1:32:13,19:13:468:19:684:-49.808,0,-32.8214	0/1:38:16,22:16:564:22:784:-57.2258,0,-39.6261	0/1:51:27,24:27:963:24:856:-58.4204,0,-71.5838	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.1594	0/1:91:39,52:39:1400:52:1860:-135.09,0,-98.8493	0/1:56:26,30:26:932:30:1058:-74.6879,0,-66.8745	0/0:71:71,0:71:2509:0:0:0,-21.3731,-225.84	0/1:65:36,29:36:1292:29:1036:-69.6405,0,-97.0054	0/1:55:29,26:29:1044:26:928:-64.0726,0,-77.545	0/0:81:81,0:81:2894:0:0:0,-24.3834,-260.13	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.018	0/0:107:107,0:107:3827:0:0:0,-32.2102,-344.474	0/0:83:81,2:81:2892:2:72:0,-18.1777,-253.332	0/0:125:124,1:124:4436:1:36:0,-34.2051,-395.624	0/1:67:33,34:33:1153:34:1199:-82.9794,0,-83.9032	0/1:73:40,33:40:1432:33:1171:-78.8801,0,-107.202	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.381	0/1:136:63,73:63:2247:73:2586:-181.377,0,-161.423	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.456	0/0:62:62,0:62:2212:0:0:0,-18.6639,-198.992	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.129	0/1:34:13,21:13:453:21:740:-54.6269,0,-30.8564	0/1:70:39,31:39:1395:31:1090:-73.8632,0,-104.759	0/1:80:36,43:36:1287:43:1540:-105.729,0,-91.9078	0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.325	0/0:135:135,0:135:4805:0:0:0,-40.639,-432.467
chr07	359158	.	T	A	46683.3	PASS	AB=0.49537;ABP=4.0359;AC=50;AF=0.265957;AN=188;AO=2756;CIGAR=1X;DP=9934;DPB=9934;DPRA=1.41833;EPP=5987.59;EPPR=15589.8;GTI=1;LEN=1;MEANALT=1;MQM=59.7892;MQMR=59.8526;NS=94;NUMALT=1;ODDS=2.7574;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98711;QR=257015;RO=7178;RPL=14;RPP=5866.6;RPPR=15364.8;RPR=2742;RUN=1;SAF=2742;SAP=5866.6;SAR=14;SRF=7152;SRP=15364.8;SRR=26;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:16,21:16:576:21:756:-57.2291,0,-41.0369	0/1:144:79,65:79:2840:65:2328:-162.343,0,-212.489	0/1:131:63,68:63:2260:68:2428:-179.341,0,-164.228	0/1:203:101,102:101:3613:102:3660:-268.494,0,-264.265	0/1:47:38,9:38:1368:9:324:-15.3574,0,-109.272	0/0:32:31,1:31:1108:1:36:0,-6.03468,-96.4327	0/1:142:51,91:51:1828:91:3260:-250.874,0,-122.055	0/0:206:206,0:206:7396:0:0:0,-62.0122,-665.679	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.223	0/0:74:72,2:72:2580:2:72:0,-15.4395,-225.612	0/0:104:101,3:101:3636:3:108:0,-21.2319,-316.264	0/1:89:47,42:47:1688:42:1508:-109.223,0,-125.415	0/1:93:50,43:50:1796:43:1538:-109.353,0,-133.927	0/1:160:92,68:92:3292:68:2425:-167.614,0,-248.335	0/0:85:84,1:84:3020:1:36:0,-21.9893,-267.328	0/1:74:41,33:41:1472:33:1184:-84.5921,0,-109.136	0/1:125:76,49:76:2728:49:1741:-119.344,0,-208.134	0/1:104:59,45:59:2120:45:1620:-113.419,0,-159.761	0/0:79:77,2:77:2764:2:72:0,-16.9446,-242.164	0/0:173:173,0:173:6176:0:0:0,-52.0782,-555.94	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/1:98:33,65:33:1184:65:2332:-180.634,0,-77.3674	0/1:95:44,51:44:1572:51:1813:-134.852,0,-113.174	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.941	0/1:79:33,46:33:1184:46:1648:-124.827,0,-83.0869	0/0:400:398,2:398:14241:2:68:0,-113.954,-1274.99	0/1:252:116,136:116:4133:136:4880:-363.456,0,-296.295	0/0:50:50,0:50:1796:0:0:0,-15.0515,-156.642	0/1:203:98,105:98:3516:105:3752:-276.772,0,-255.54	0/1:129:75,54:75:2681:54:1940:-136.043,0,-202.7	0/1:78:46,32:46:1640:32:1144:-79.7892,0,-124.408	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/1:207:111,96:111:3976:96:3448:-248.219,0,-293.075	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.846	0/0:87:86,1:86:3096:1:36:0,-22.5913,-275.268	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:119:76,43:76:2716:43:1540:-103.071,0,-208.859	0/1:52:19,33:19:680:33:1188:-88.8448,0,-43.4821	0/0:154:154,0:154:5489:0:0:0,-46.3586,-494.138	0/0:109:107,2:107:3844:2:72:0,-25.9755,-338.215	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:94:93,1:93:3340:1:36:0,-24.6985,-297.218	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.157	0/1:87:49,38:49:1748:38:1356:-96.1509,0,-131.415	0/1:153:72,81:72:2576:81:2900:-213.989,0,-186.032	0/1:111:64,47:64:2280:47:1688:-118.793,0,-172.048	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:123:122,1:122:4368:1:36:0,-33.4284,-385.871	0/1:45:18,27:18:640:27:968:-73.891,0,-44.383	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:94:44,50:44:1564:50:1800:-133.985,0,-112.755	0/1:55:35,20:35:1236:20:720:-48.5721,0,-94.9876	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:94:42,52:42:1496:52:1860:-139.383,0,-104.083	0/0:161:160,1:160:5740:1:36:0,-44.8676,-513.107	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:171:112,59:112:3997:59:2109:-138.601,0,-308.443	0/0:310:309,1:309:11064:1:32:0,-90.12,-992.453	0/1:92:38,54:38:1364:54:1936:-146.822,0,-95.366	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.337	0/1:177:124,53:124:4432:53:1874:-115.653,0,-345.77	0/1:116:29,87:29:1044:87:3120:-246.107,0,-59.3553	0/1:56:25,31:25:900:31:1116:-83.894,0,-64.4633	0/1:89:28,61:28:1004:61:2188:-170.394,0,-63.8842	0/1:122:68,54:68:2440:54:1944:-136.131,0,-178.713	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:160:62,98:62:2224:98:3513:-268.213,0,-152.259	0/1:103:46,57:46:1641:57:2029:-151.875,0,-116.969	0/0:185:185,0:185:6616:0:0:0,-55.6905,-595.521	0/1:113:56,57:56:1993:57:2036:-149.496,0,-145.626	0/1:151:81,70:81:2896:70:2508:-180.517,0,-215.421	0/0:91:89,2:89:3184:2:72:0,-20.557,-279.947	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:115:114,1:114:4092:1:36:0,-31.0202,-364.866	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:230:230,0:230:8236:0:0:0,-69.2369,-741.249	0/1:127:74,53:74:2652:53:1904:-133.407,0,-200.695	0/1:109:59,50:59:2120:50:1796:-127.92,0,-157.152	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.273	0/1:180:98,82:98:3508:82:2921:-208.933,0,-261.745	0/0:52:50,2:50:1788:2:72:0,-8.81684,-153.089	0/0:102:101,1:101:3624:1:36:0,-27.1068,-322.762	0/0:86:85,1:85:3044:1:36:0,-22.2903,-269.089	0/1:111:50,61:50:1792:61:2196:-164.491,0,-128.148	0/1:182:85,97:85:3040:97:3476:-256.902,0,-217.68	0/1:118:48,70:48:1694:70:2504:-190.091,0,-117.063	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:124:122,2:122:4380:2:72:0,-30.491,-387.531
chr07	359211	.	G	T	369282	PASS	AB=0.48628;ABP=21.66;AC=140;AF=0.744681;AN=188;AO=14157;CIGAR=1X;DP=20046;DPB=20046;DPRA=0;EPP=30744.5;EPPR=12764.8;GTI=2;LEN=1;MEANALT=1.11702;MQM=51.4572;MQMR=52.2474;NS=94;NUMALT=1;ODDS=4.86625;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=503743;QR=207555;RO=5877;RPL=7082;RPP=3.01782;RPPR=99.491;RPR=7075;RUN=1;SAF=7082;SAP=3.01782;SAR=7075;SRF=2683;SRP=99.491;SRR=3194;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:142:72,70:72:2550:70:2490:-177.466,0,-185.387	0/1:267:142,125:142:5011:125:4450:-316.316,0,-367.891	0/1:252:130,122:130:4586:122:4328:-310.346,0,-334.875	0/1:500:241,259:241:8542:259:9203:-660.625,0,-611.236	1/1:174:6,167:6:216:167:5938:-503.957,-32.6409,0	1/1:68:0,68:0:0:68:2411:-214.296,-20.47,0	0/1:312:173,138:173:6120:138:4925:-342.927,0,-453.007	1/1:352:0,351:0:0:351:12499:-1111.72,-105.662,0	1/1:268:0,268:0:0:268:9462:-841.6,-80.676,0	1/1:154:4,150:4:140:150:5344:-461.532,-33.414,0	1/1:155:0,155:0:0:155:5532:-491.298,-46.6597,0	0/1:197:87,110:87:3075:110:3923:-288.573,0,-215.407	0/1:166:83,83:83:2933:83:2975:-215.035,0,-212.659	0/1:237:111,126:111:3896:126:4462:-326.111,0,-277.66	1/1:163:0,163:0:0:163:5823:-515.209,-49.0679,0	0/1:136:66,70:66:2329:70:2485:-180.285,0,-167.607	0/1:176:86,90:86:3030:90:3187:-233.065,0,-218.649	0/1:155:84,71:84:2974:71:2534:-180.613,0,-219.171	1/1:101:0,101:0:0:101:3587:-321.387,-30.404,0	1/1:308:0,308:0:0:308:10966:-974.818,-92.7172,0	1/1:237:0,237:0:0:237:8436:-748.674,-71.3441,0	0/1:249:179,70:179:6267:70:2486:-146.761,0,-485.911	0/1:234:102,132:102:3622:132:4690:-344.542,0,-253.571	1/1:215:1,214:1:36:214:7633:-676.083,-61.1729,0	0/1:216:94,121:94:3344:121:4324:-318.091,0,-234.138	1/1:723:1,722:1:36:722:25613:-2285.68,-214.071,0	0/1:609:280,329:280:9974:329:11726:-852.603,0,-707.439	1/1:81:0,81:0:0:81:2851:-252.894,-24.3834,0	0/1:444:229,215:229:8083:215:7656:-548.118,0,-589.244	0/1:285:145,140:145:5157:140:4991:-358.011,0,-373.483	0/1:227:126,101:126:4439:101:3574:-248.433,0,-325.492	1/1:24:0,24:0:0:24:844:-75.3402,-7.22472,0	1/1:55:0,55:0:0:55:1960:-174.768,-16.5567,0	1/1:27:0,27:0:0:27:960:-85.5945,-8.12781,0	1/1:11:0,11:0:0:11:388:-34.8766,-3.31133,0	0/1:66:21,45:21:748:45:1593:-120.841,0,-47.4056	0/1:439:223,215:223:7863:215:7672:-552.355,0,-572.611	1/1:243:0,243:0:0:243:8620:-766.929,-73.1503,0	1/1:139:0,139:0:0:139:4930:-440.354,-41.8432,0	0/1:6:4,2:4:136:2:72:-4.91884,0,-10.3777	0/1:323:174,149:174:6124:149:5284:-372.6,0,-447.541	0/1:83:48,35:48:1707:35:1240:-85.3156,0,-128.233	1/1:346:0,346:0:0:346:12320:-1094.14,-104.156,0	1/1:167:1,166:1:36:166:5906:-522.674,-46.6737,0	1/1:155:0,155:0:0:155:5535:-492.534,-46.6597,0	1/1:225:0,225:0:0:225:7974:-707.102,-67.7318,0	1/1:189:1,188:1:36:188:6703:-591.722,-53.2964,0	1/1:235:1,234:1:36:234:8354:-735.257,-67.1935,0	0/1:191:84,107:84:2956:107:3817:-280.519,0,-206.474	0/1:280:150,130:150:5347:130:4652:-327.781,0,-393.921	0/1:372:196,175:196:6944:175:6222:-442.44,0,-508.448	1/1:29:0,29:0:0:29:1031:-91.7256,-8.72987,0	1/1:254:1,252:1:36:252:8993:-795.59,-72.8422,0	0/1:123:51,71:51:1786:71:2523:-187.647,0,-123.362	1/1:29:0,29:0:0:29:1017:-90.1495,-8.72987,0	0/1:281:136,145:136:4785:145:5139:-370.115,0,-342.563	0/1:143:68,75:68:2415:75:2674:-194.528,0,-172.435	0/1:43:14,29:14:478:29:1036:-79.4902,0,-30.2843	1/1:32:0,32:0:0:32:1130:-101.378,-9.63296,0	0/1:199:105,94:105:3662:94:3313:-234.193,0,-266.985	1/1:256:1,255:1:36:255:9082:-804.33,-73.4654,0	1/1:22:0,22:0:0:22:788:-69.9112,-6.62266,0	0/1:335:178,157:178:6226:157:5582:-398.98,0,-456.836	1/1:507:1,506:1:32:506:17986:-1597.97,-149.443,0	0/1:193:109,84:109:3865:84:2995:-208.335,0,-287.51	1/1:165:0,164:0:0:164:5851:-518.946,-49.3689,0	0/1:376:146,230:146:5146:230:8163:-612.429,0,-346.311	0/1:305:211,94:211:7437:94:3317:-201.925,0,-571.919	0/1:89:43,46:43:1522:46:1627:-118.386,0,-110.006	0/1:224:151,73:151:5297:73:2604:-162.742,0,-406.064	0/1:171:93,78:93:3267:78:2785:-198.522,0,-240.362	1/1:53:0,53:0:0:53:1889:-168.18,-15.9546,0	0/1:284:145,139:145:5151:139:4958:-354.374,0,-376.276	0/1:187:92,95:92:3273:95:3400:-246.426,0,-237.217	1/1:366:0,366:0:0:366:13047:-1158.11,-110.177,0	0/1:323:179,144:179:6317:144:5124:-356.953,0,-466.075	0/1:247:102,145:102:3613:145:5173:-386.604,0,-249.921	1/1:181:1,180:1:36:180:6404:-566.154,-50.8882,0	1/1:11:0,11:0:0:11:392:-35.5203,-3.31133,0	1/1:244:1,241:1:36:241:8596:-759.81,-69.6082,0	1/1:256:0,256:0:0:256:9088:-807.092,-77.0637,0	1/1:478:0,477:0:0:477:16996:-1508.53,-143.591,0	0/1:217:122,95:122:4317:95:3396:-238.369,0,-320.174	0/1:177:75,102:75:2640:102:3642:-270.247,0,-183.269	1/1:191:0,191:0:0:191:6803:-607.652,-57.4967,0	0/1:321:162,159:162:5723:159:5669:-408.523,0,-412.681	1/1:68:0,68:0:0:68:2389:-214.395,-20.47,0	1/1:162:0,162:0:0:162:5769:-515.231,-48.7669,0	1/1:164:0,164:0:0:164:5847:-520.837,-49.3689,0	0/1:153:84,69:84:2961:69:2476:-175.523,0,-219.635	0/1:258:139,119:139:4887:119:4243:-301.526,0,-360.199	0/1:194:120,74:120:4246:74:2627:-175.316,0,-321.971	1/1:127:1,126:1:36:126:4503:-397.989,-34.6823,0	1/1:229:1,228:1:36:228:8126:-719.179,-65.3874,0
chr07	434676	.	GTT	ATT	109026	PASS	AB=0.506167;ABP=4.3762;AC=136;AF=0.73913;AN=184;AO=5290;CIGAR=1X2M;DP=7350;DPB=7350;DPRA=26.9121;EPP=11490.1;EPPR=4406.76;GTI=2;LEN=1;MEANALT=1.27473;MQM=59.1242;MQMR=59.8607;NS=92;NUMALT=1;ODDS=1.44808;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188912;QR=70776;RO=2032;RPL=5290;RPP=11490.1;RPPR=4406.76;RPR=0;RUN=1;SAF=5290;SAP=11490.1;SAR=0;SRF=2032;SRP=4415.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:13,7:13:455:7:248:-16.6083,0,-35.2621	0/1:190:106,83:106:3713:83:2972:-210.285,0,-277.118	0/1:97:39,58:39:1352:58:2069:-157.243,0,-92.7062	0/1:164:103,59:103:3616:59:2105:-140.496,0,-276.507	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:31:0,31:0:0:31:1099:-98.9068,-9.33193,0	0/1:114:52,62:52:1820:62:2224:-166.052,0,-129.755	1/1:125:0,125:0:0:125:4468:-402.064,-37.6288,0	1/1:85:0,85:0:0:85:3018:-271.7,-25.5876,0	1/1:111:0,111:0:0:111:3961:-356.1,-33.4143,0	1/1:26:0,26:0:0:26:932:-84.1669,-7.82678,0	0/1:19:11,8:11:369:8:288:-20.5252,0,-27.8128	0/1:35:18,17:18:627:17:593:-43.1412,0,-46.218	0/1:60:25,35:25:855:35:1252:-94.9008,0,-59.1884	1/1:29:0,29:0:0:29:1038:-93.3096,-8.72987,0	0/1:20:6,14:6:214:14:500:-39.1165,0,-13.5872	0/1:58:26,30:26:880:30:1072:-79.5938,0,-62.3117	0/1:24:14,9:14:500:9:320:-21.8389,0,-38.0554	1/1:18:0,17:0:0:17:604:-54.3109,-5.11751,0	1/1:91:0,90:0:0:90:3183:-285.962,-27.0927,0	1/1:125:0,124:0:0:124:4435:-398.882,-37.3277,0	0/1:88:67,21:67:2358:21:756:-41.8732,0,-185.987	0/1:316:140,173:140:4870:173:6134:-456.938,0,-343.859	1/1:126:0,126:0:0:126:4528:-407.61,-37.9298,0	0/1:43:24,19:24:842:19:684:-48.8995,0,-63.1533	1/1:235:0,235:0:0:235:8412:-756.823,-70.7421,0	0/1:128:61,67:61:2098:67:2396:-177.185,0,-150.549	1/1:10:0,10:0:0:10:360:-32.472,-3.0103,0	0/1:145:67,78:67:2333:78:2804:-208.909,0,-166.578	0/1:188:85,102:85:2979:102:3647:-271.7,0,-211.675	0/1:239:120,118:120:4099:118:4182:-302.793,0,-297.008	1/1:6:0,6:0:0:6:216:-19.7615,-1.80618,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:4:0,4:0:0:4:144:-13.2906,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:67:23,43:23:815:43:1529:-117.658,0,-53.4436	1/1:191:0,191:0:0:191:6780:-609.592,-57.4967,0	1/1:22:0,19:0:0:19:680:-61.1911,-5.71957,0	.:.:.:.:.:.:.:.	0/1:148:71,76:71:2465:76:2709:-199.345,0,-177.596	0/1:12:4,8:4:139:8:288:-22.6261,0,-9.24014	1/1:73:0,73:0:0:73:2603:-234.301,-21.9752,0	1/1:28:0,27:0:0:27:972:-87.3882,-8.12781,0	1/1:22:0,22:0:0:22:788:-71.2108,-6.62266,0	1/1:83:0,82:0:0:82:2938:-264.328,-24.6845,0	1/1:56:0,56:0:0:56:2012:-181.286,-16.8577,0	1/1:129:0,129:0:0:129:4633:-416.66,-38.8329,0	0/1:120:62,57:62:2145:57:2048:-148.347,0,-157.131	0/1:113:54,59:54:1923:59:2105:-155.677,0,-139.224	0/1:152:67,84:67:2376:84:3005:-224.861,0,-168.294	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:148:0,148:0:0:148:5270:-474.098,-44.5524,0	0/1:52:22,29:22:754:29:1036:-77.8317,0,-52.4666	1/1:10:0,10:0:0:10:360:-32.674,-3.0103,0	0/1:69:39,30:39:1355:30:1076:-76.3344,0,-101.475	0/1:52:22,30:22:766:30:1065:-80.5062,0,-53.6037	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:19:0,19:0:0:19:680:-61.5272,-5.71957,0	0/1:125:69,56:69:2370:56:1997:-142.347,0,-175.925	1/1:54:2,52:2:67:52:1868:-162.001,-9.89278,0	.:.:.:.:.:.:.:.	0/1:213:88,124:88:3055:124:4431:-334.602,0,-210.964	1/1:202:3,197:3:108:197:7050:-624.13,-50.4572,0	0/1:83:42,41:42:1475:41:1472:-107.763,0,-108.051	1/1:56:0,56:0:0:56:1972:-177.566,-16.8577,0	0/1:178:87,91:87:3028:91:3272:-241.06,0,-219.168	0/1:186:117,69:117:4082:69:2472:-166.662,0,-311.576	0/1:9:2,7:2:64:7:243:-19.4919,0,-3.36883	0/1:65:29,36:29:1016:36:1288:-96.6202,0,-72.1824	0/1:54:23,31:23:814:31:1112:-84.0862,0,-57.3254	1/1:45:0,45:0:0:45:1600:-144.239,-13.5464,0	0/1:95:50,45:50:1718:45:1620:-117.367,0,-126.297	0/1:54:20,34:20:702:34:1205:-92.4983,0,-47.2474	1/1:260:0,260:0:0:260:9257:-832.817,-78.2678,0	0/1:112:49,63:49:1714:63:2260:-169.894,0,-120.824	0/1:38:24,14:24:846:14:500:-33.8745,0,-65.0201	1/1:64:0,64:0:0:64:2292:-206.478,-19.2659,0	1/1:22:0,22:0:0:22:776:-70.1081,-6.62266,0	1/1:72:0,72:0:0:72:2573:-231.729,-21.6742,0	1/1:87:0,87:0:0:87:3105:-279.015,-26.1896,0	1/1:223:0,223:0:0:223:7966:-716.242,-67.1297,0	0/1:46:21,25:21:734:25:900:-67.3867,0,-52.5326	0/1:21:9,12:9:322:12:428:-32.5372,0,-23.0026	1/1:36:0,36:0:0:36:1287:-114.544,-10.8371,0	0/1:56:23,32:23:806:32:1148:-86.8153,0,-56.0673	1/1:21:0,21:0:0:21:755:-68.2091,-6.32163,0	1/1:31:0,31:0:0:31:1100:-99.2621,-9.33193,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:13:5,8:5:178:8:288:-22.354,0,-12.4553	0/1:33:15,18:15:526:18:648:-48.6938,0,-37.7363	0/1:17:9,8:9:289:8:273:-19.7373,0,-21.2048	1/1:137:0,137:0:0:137:4877:-438.821,-41.2411,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0
chr07	434687	.	T	C	95222.8	PASS	AB=0.492779;ABP=4.79776;AC=135;AF=0.733696;AN=184;AO=4868;CIGAR=1X;DP=6890;DPB=6890;DPRA=25.2271;EPP=10573.7;EPPR=4385.04;GTI=1;LEN=1;MEANALT=1.04396;MQM=59.1495;MQMR=59.837;NS=92;NUMALT=1;ODDS=1.21019;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168992;QR=71982;RO=2018;RPL=4868;RPP=10573.7;RPPR=4385.04;RPR=0;RUN=1;SAF=4868;SAP=10573.7;SAR=0;SRF=2018;SRP=4385.04;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:13,6:13:450:6:207:-13.2014,0,-35.1086	0/1:182:106,76:106:3791:76:2602:-179.535,0,-286.598	0/1:90:37,53:37:1313:53:1801:-135.202,0,-91.2709	0/1:159:98,61:98:3499:61:2148:-145.515,0,-267.186	1/1:14:0,14:0:0:14:481:-43.6151,-4.21442,0	1/1:28:0,28:0:0:28:991:-89.4704,-8.42884,0	0/1:111:51,60:51:1836:60:2130:-158.489,0,-132.071	1/1:118:0,118:0:0:118:4104:-369.45,-35.5215,0	1/1:75:0,75:0:0:75:2622:-236.109,-22.5773,0	1/1:103:1,102:1:36:102:3591:-319.428,-27.4078,0	1/1:23:0,23:0:0:23:776:-70.1223,-6.92369,0	0/1:18:11,7:11:388:7:243:-16.7889,0,-29.8388	0/1:34:17,17:17:603:17:582:-42.4593,0,-44.3645	0/1:56:24,32:24:851:32:1102:-82.618,0,-60.0518	1/1:25:0,25:0:0:25:862:-77.6225,-7.52575,0	0/1:19:6,13:6:216:13:433:-33.5124,0,-14.0709	0/1:50:26,24:26:928:24:810:-58.1597,0,-68.7868	0/1:23:14,9:14:496:9:301:-20.4582,0,-38.0506	1/1:18:0,18:0:0:18:606:-54.809,-5.41854,0	1/1:82:0,82:0:0:82:2841:-255.43,-24.6845,0	1/1:117:1,116:1:36:116:4082:-363.837,-31.6222,0	0/1:86:67,19:67:2400:19:671:-34.8272,0,-190.368	0/1:302:143,159:143:5100:159:5440:-398.684,0,-368.194	1/1:114:0,114:0:0:114:4021:-362.007,-34.3174,0	0/1:43:25,18:25:900:18:627:-43.7841,0,-68.3767	1/1:228:2,226:2:63:226:7971:-711.248,-62.6566,0	0/1:118:59,58:59:2112:58:2022:-146.616,0,-154.723	1/1:8:0,8:0:0:8:267:-24.3554,-2.40824,0	0/1:141:66,75:66:2372:75:2651:-196.363,0,-171.292	0/1:178:85,93:85:3014:93:3240:-238.147,0,-217.878	0/1:222:116,106:116:4134:106:3717:-266.586,0,-305.38	1/1:5:0,5:0:0:5:180:-16.5229,-1.50515,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:3:1,2:1:36:2:72:-5.91003,0,-2.69518	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:62:24,38:24:856:38:1299:-98.5382,0,-58.6972	1/1:173:0,172:0:0:172:5959:-535.717,-51.7772,0	1/1:22:0,22:0:0:22:759:-68.5508,-6.62266,0	.:.:.:.:.:.:.:.	0/1:144:69,74:69:2453:74:2557:-186.862,0,-177.608	0/1:10:5,5:5:180:5:167:-12.3439,0,-13.5418	1/1:70:0,70:0:0:70:2377:-214.132,-21.0721,0	1/1:28:0,28:0:0:28:979:-88.3592,-8.42884,0	1/1:20:0,20:0:0:20:679:-61.4018,-6.0206,0	1/1:78:0,78:0:0:78:2712:-244.201,-23.4803,0	1/1:53:0,53:0:0:53:1884:-169.811,-15.9546,0	1/1:121:0,121:0:0:121:4243:-381.648,-36.4246,0	0/1:114:58,56:58:2075:56:1960:-142.309,0,-152.702	0/1:108:53,55:53:1896:55:1929:-141.341,0,-138.301	0/1:147:66,81:66:2353:81:2808:-208.242,0,-167.706	1/1:6:0,6:0:0:6:188:-17.2275,-1.80618,0	1/1:120:0,120:0:0:120:4165:-374.936,-36.1236,0	0/1:48:22,26:22:779:26:901:-66.9243,0,-55.9826	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:67:38,29:38:1364:29:999:-70.0022,0,-102.891	0/1:49:22,27:22:788:27:939:-70.0722,0,-56.4943	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:17:0,17:0:0:17:604:-54.6891,-5.11751,0	0/1:122:70,52:70:2444:52:1813:-126.645,0,-183.487	1/1:48:2,46:2:68:46:1565:-134.647,-7.99173,0	.:.:.:.:.:.:.:.	0/1:206:87,119:87:3120:119:4116:-308.512,0,-218.87	1/1:193:3,190:3:108:190:6674:-590.374,-48.0236,0	0/1:74:41,33:41:1453:33:1120:-78.7995,0,-108.717	1/1:50:1,49:1:36:49:1729:-152.17,-11.4549,0	0/1:173:87,86:87:3089:86:2990:-217.198,0,-226.157	0/1:178:114,64:114:4084:64:2191:-143.817,0,-314.156	0/1:8:2,6:2:72:6:190:-14.9973,0,-4.42848	0/1:64:31,33:31:1108:33:1162:-85.585,0,-80.7651	0/1:50:23,27:23:816:27:930:-68.9426,0,-58.7102	1/1:34:1,33:1:36:33:1118:-97.2721,-6.63675,0	0/1:91:49,42:49:1764:42:1452:-103.521,0,-131.564	0/1:49:20,29:20:720:29:1009:-76.3682,0,-50.3783	1/1:231:1,229:1:36:229:7918:-708.969,-66.0361,0	0/1:107:47,60:47:1688:60:2092:-156.323,0,-119.997	0/1:38:24,14:24:856:14:479:-31.9737,0,-65.922	1/1:60:0,60:0:0:60:2059:-185.524,-18.0618,0	1/1:19:0,19:0:0:19:659:-59.5844,-5.71957,0	1/1:62:0,62:0:0:62:2122:-191.197,-18.6639,0	1/1:85:1,84:1:36:84:2923:-258.515,-22.0141,0	1/1:212:0,212:0:0:212:7435:-668.859,-63.8184,0	0/1:44:21,23:21:739:23:774:-56.6955,0,-53.5868	0/1:21:9,12:9:324:12:420:-31.8124,0,-23.1842	1/1:35:0,35:0:0:35:1151:-102.566,-10.5361,0	0/1:54:23,31:23:819:31:1066:-79.9662,0,-57.7759	1/1:16:1,15:1:36:15:503:-42.0187,-1.24967,0	1/1:28:0,28:0:0:28:938:-84.7052,-8.42884,0	1/1:29:0,29:0:0:29:1002:-90.4887,-8.72987,0	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:31:15,16:15:536:16:555:-40.9201,0,-39.2429	0/1:17:9,8:9:316:8:276:-20.0259,0,-23.6613	1/1:115:0,115:0:0:115:3901:-351.22,-34.6185,0	1/1:31:1,30:1:36:30:1046:-90.8501,-5.73366,0
chr07	516862	.	T	C	42731.8	PASS	AB=0.523208;ABP=25.5871;AC=47;AF=0.25;AN=188;AO=2529;CIGAR=1X;DP=8852;DPB=8852;DPRA=1.19829;EPP=5494.66;EPPR=13718;GTI=3;LEN=1;MEANALT=1.01961;MQM=59.5346;MQMR=59.6149;NS=94;NUMALT=1;ODDS=0.642585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89869;QR=226066;RO=6320;RPL=2529;RPP=5494.66;RPPR=13709.3;RPR=0;RUN=1;SAF=2529;SAP=5494.66;SAR=0;SRF=6319;SRP=13718;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:24,61:24:860:61:2167:-169.694,0,-52.1343	0/1:119:55,64:55:1980:64:2286:-169.548,0,-142.486	0/1:85:43,42:43:1540:42:1503:-109.96,0,-113.294	0/1:200:94,106:94:3367:106:3793:-281.329,0,-242.808	0/0:70:69,0:69:2438:0:0:0,-20.7711,-219.304	0/0:71:71,0:71:2514:0:0:0,-21.3731,-226.512	0/1:121:65,56:65:2323:56:1975:-141.484,0,-172.903	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.596	0/0:121:121,0:121:4310:0:0:0,-36.4246,-388.006	0/0:76:76,0:76:2727:0:0:0,-22.8783,-245.662	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.632	0/1:83:40,43:40:1431:43:1525:-112.495,0,-103.155	0/1:49:18,31:18:639:31:1108:-85.2691,0,-43.0796	0/1:91:42,49:42:1504:49:1745:-129.905,0,-108.252	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.715	0/1:57:24,33:24:856:33:1141:-85.8271,0,-60.2006	0/1:59:28,31:28:1008:31:1112:-82.6224,0,-73.2756	0/1:51:21,30:21:743:30:1067:-80.9805,0,-51.8408	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.337	0/0:157:157,0:157:5627:0:0:0,-47.2617,-506.503	0/0:144:144,0:144:5154:0:0:0,-43.3483,-463.531	0/1:122:48,74:48:1724:74:2635:-200.642,0,-118.67	0/1:78:28,50:28:1008:50:1786:-137.536,0,-67.556	0/0:129:128,1:128:4570:1:36:0,-35.2346,-407.7	0/1:69:40,28:40:1440:28:1004:-69.8276,0,-109	0/0:361:361,0:361:12942:0:0:0,-108.672,-1164.52	0/1:171:91,80:91:3255:80:2834:-203.799,0,-241.69	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.805	0/1:210:77,133:77:2764:133:4730:-362.614,0,-185.721	0/1:208:96,112:96:3417:112:3958:-293.638,0,-245.122	0/1:167:82,85:82:2939:85:2990:-219.038,0,-214.452	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:150:77,73:77:2764:73:2611:-190.079,0,-203.818	0/0:231:231,0:231:8276:0:0:0,-69.5379,-744.777	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.268	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:129:72,57:72:2588:57:1992:-140.501,0,-194.322	0/1:26:17,9:17:612:9:324:-21.6744,0,-47.5867	0/0:137:137,0:137:4902:0:0:0,-41.2411,-441.267	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.056	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.087	0/0:98:98,0:98:3501:0:0:0,-29.5009,-314.808	0/0:112:111,1:111:3969:1:36:0,-30.1171,-353.747	0/0:138:138,0:138:4955:0:0:0,-41.5421,-445.957	0/1:101:48,53:48:1724:53:1862:-137.436,0,-124.808	0/1:132:69,63:69:2458:63:2244:-162.473,0,-181.72	0/1:185:82,103:82:2919:103:3665:-274.247,0,-207.102	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0952	0/0:109:109,0:109:3884:0:0:0,-32.8123,-349.677	0/1:45:24,21:24:849:21:752:-54.459,0,-63.1797	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:107:58,49:58:2076:49:1748:-125.389,0,-154.743	0/1:105:56,49:56:2008:49:1756:-126.708,0,-149.381	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6957	0/1:67:30,37:30:1076:37:1309:-97.5579,0,-76.9774	0/0:94:94,0:94:3368:0:0:0,-28.2968,-302.538	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:226:112,114:112:3971:114:4061:-297.151,0,-288.946	0/0:316:316,0:316:11347:0:0:0,-95.1255,-1021.07	0/1:57:19,38:19:675:38:1364:-105.902,0,-43.9182	0/0:69:69,0:69:2452:0:0:0,-20.7711,-220.933	0/1:206:102,104:102:3632:104:3711:-272.154,0,-265.062	0/1:89:19,70:19:676:70:2507:-199.081,0,-34.3716	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:85:48,37:48:1720:37:1304:-92.0629,0,-129.437	0/1:71:43,28:43:1544:28:1000:-68.9422,0,-117.88	0/0:18:18,0:18:639:0:0:0,-5.41854,-56.4689	0/1:113:67,46:67:2412:46:1613:-111.368,0,-183.06	0/1:58:27,31:27:968:31:1103:-82.1037,0,-69.958	0/0:204:204,0:204:7294:0:0:0,-61.4101,-655.58	0/1:162:85,77:85:3048:77:2747:-198.604,0,-225.765	0/1:110:35,75:35:1252:75:2692:-209.374,0,-79.8623	0/0:115:114,0:114:4085:0:0:0,-34.3174,-367.244	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.524	0/0:99:98,1:98:3491:1:36:0,-26.2037,-310.767	0/0:144:144,0:144:5159:0:0:0,-43.3483,-464.388	0/1:120:65,55:65:2336:55:1913:-136.312,0,-174.369	0/1:48:27,21:27:953:21:747:-53.1002,0,-71.6315	0/0:93:93,0:93:3318:0:0:0,-27.9958,-298.828	0/1:138:72,66:72:2557:66:2326:-168.048,0,-188.748	0/0:30:29,1:29:1035:1:36:0,-5.6433,-90.0673	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.447	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:49:25,24:25:896:24:860:-62.9621,0,-66.2053	0/1:135:62,73:62:2203:73:2583:-192.072,0,-157.892	0/1:60:26,34:26:932:34:1212:-91.3222,0,-66.1347	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.517	0/0:76:76,0:76:2723:0:0:0,-22.8783,-245.21
chr07	516872	.	A	T	127842	PASS	AB=0.475351;ABP=27.8461;AC=141;AF=0.75;AN=188;AO=6224;CIGAR=1X;DP=8698;DPB=8698;DPRA=0;EPP=13500.9;EPPR=5364.38;GTI=3;LEN=1;MEANALT=1.04255;MQM=59.6068;MQMR=59.5379;NS=94;NUMALT=1;ODDS=0.183499;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220861;QR=87910;RO=2469;RPL=6223;RPP=13509.6;RPPR=5364.38;RPR=1;RUN=1;SAF=6223;SAP=13509.6;SAR=1;SRF=2469;SRP=5364.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:58,23:58:2076:23:819:-49.6481,0,-162.516	0/1:111:60,51:60:2116:51:1816:-130.228,0,-156.199	0/1:83:42,41:42:1477:41:1449:-105.702,0,-108.221	0/1:199:106,91:106:3788:91:3205:-228.937,0,-281.304	1/1:69:0,69:0:0:69:2444:-220.211,-20.7711,0	1/1:72:0,72:0:0:72:2545:-229.297,-21.6742,0	0/1:115:54,61:54:1936:61:2175:-161.397,0,-139.891	1/1:67:0,67:0:0:67:2392:-215.237,-20.169,0	1/1:115:0,115:0:0:115:4084:-367.694,-34.6185,0	1/1:75:0,75:0:0:75:2675:-240.99,-22.5773,0	1/1:46:0,46:0:0:46:1644:-148.245,-13.8474,0	0/1:83:44,39:44:1572:39:1374:-98.9635,0,-116.725	0/1:49:30,19:30:1063:19:680:-46.7567,0,-81.2222	0/1:89:49,40:49:1752:40:1436:-102.737,0,-130.836	1/1:60:0,60:0:0:60:2141:-192.956,-18.0618,0	0/1:56:33,23:33:1172:23:811:-56.4477,0,-88.9206	0/1:57:29,28:29:1040:28:1004:-73.5172,0,-76.7475	0/1:50:31,19:31:1100:19:676:-46.1165,0,-83.3116	1/1:37:0,37:0:0:37:1319:-119.003,-11.1381,0	1/1:159:0,159:0:0:159:5671:-510.47,-47.8638,0	1/1:145:0,145:0:0:145:5148:-462.994,-43.6494,0	0/1:123:71,52:71:2523:52:1818:-126.823,0,-190.218	0/1:77:50,27:50:1792:27:955:-63.0855,0,-138.377	1/1:131:1,130:1:36:130:4618:-411.974,-35.8367,0	0/1:68:28,40:28:1000:40:1401:-105.892,0,-69.8269	1/1:358:1,357:1:36:357:12633:-1133.13,-104.17,0	0/1:163:75,88:75:2669:88:3138:-233.573,0,-191.371	1/1:38:0,38:0:0:38:1356:-122.328,-11.4391,0	0/1:206:129,77:129:4567:77:2747:-185.395,0,-349.097	0/1:205:110,95:110:3935:95:3331:-238.265,0,-292.224	0/1:163:84,79:84:2999:79:2823:-205.229,0,-221.055	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:149:73,76:73:2603:76:2697:-198.115,0,-189.661	1/1:226:0,226:0:0:226:7988:-718.882,-68.0328,0	1/1:54:0,54:0:0:54:1893:-170.595,-16.2556,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:118:47,71:47:1660:71:2533:-192.689,0,-113.58	0/1:25:9,16:9:301:16:576:-44.6492,0,-19.8861	1/1:134:0,134:0:0:134:4762:-428.508,-40.338,0	1/1:68:0,68:0:0:68:2440:-219.846,-20.47,0	1/1:65:0,65:0:0:65:2298:-207.077,-19.567,0	1/1:94:0,94:0:0:94:3333:-299.695,-28.2968,0	1/1:110:1,109:1:36:109:3870:-344.862,-29.515,0	1/1:137:0,137:0:0:137:4882:-439.423,-41.2411,0	0/1:100:53,47:53:1877:47:1673:-120.519,0,-139.093	0/1:127:60,67:60:2118:67:2378:-176.034,0,-152.643	0/1:175:100,75:100:3534:75:2679:-188.657,0,-265.475	1/1:13:0,13:0:0:13:464:-42.0952,-3.91339,0	1/1:106:0,106:0:0:106:3772:-339.605,-31.9092,0	0/1:45:22,23:22:776:23:824:-60.9351,0,-56.6154	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:106:50,56:50:1788:56:1999:-148.25,0,-129.289	0/1:102:47,55:47:1665:55:1939:-144.078,0,-119.423	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	1/1:14:0,14:0:0:14:504:-45.6957,-4.21442,0	0/1:65:36,29:36:1269:29:1032:-73.6173,0,-94.3021	1/1:89:0,89:0:0:89:3154:-283.289,-26.7917,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:221:112,109:112:4012:109:3877:-281.99,0,-294.246	1/1:317:0,317:0:0:317:11283:-1015.22,-95.4265,0	0/1:58:38,20:38:1349:20:712:-46.9469,0,-104.249	1/1:68:0,68:0:0:68:2395:-215.806,-20.47,0	0/1:200:99,101:99:3529:101:3582:-262.362,0,-257.595	0/1:86:68,17:68:2419:17:608:-29.1003,0,-192.012	0/1:11:7,4:7:252:4:135:-9.17118,0,-19.7176	0/1:80:37,43:37:1328:43:1517:-112.699,0,-95.7317	0/1:70:29,41:29:1036:41:1454:-110.082,0,-72.4818	1/1:17:0,17:0:0:17:603:-54.5991,-5.11751,0	0/1:110:44,66:44:1584:66:2348:-178.213,0,-109.515	0/1:55:30,25:30:1076:25:877:-62.6719,0,-80.5799	1/1:201:0,201:0:0:201:7063:-635.689,-60.507,0	0/1:158:75,83:75:2664:83:2946:-217.802,0,-192.343	0/1:102:70,32:70:2504:32:1148:-72.9166,0,-194.899	1/1:115:0,115:0:0:115:4068:-366.232,-34.6185,0	1/1:13:0,13:0:0:13:460:-41.7272,-3.91339,0	1/1:80:0,80:0:0:80:2855:-257.16,-24.0824,0	1/1:97:1,96:1:36:96:3409:-303.392,-25.6016,0	1/1:142:0,142:0:0:142:5065:-455.905,-42.7463,0	0/1:118:54,64:54:1924:64:2287:-170.562,0,-137.826	0/1:48:22,26:22:792:26:924:-69.0259,0,-57.1515	1/1:91:0,91:0:0:91:3208:-288.934,-27.3937,0	0/1:139:65,73:65:2324:73:2578:-190.265,0,-167.514	1/1:30:0,29:0:0:29:1014:-91.1151,-8.72987,0	1/1:75:0,75:0:0:75:2643:-238.087,-22.5773,0	1/1:56:0,56:0:0:56:2003:-180.543,-16.8577,0	0/1:48:24,24:24:860:24:845:-61.913,0,-63.2632	0/1:133:73,60:73:2585:60:2121:-151.118,0,-192.844	0/1:63:34,29:34:1216:29:1023:-73.4158,0,-90.7793	1/1:90:0,90:0:0:90:3186:-286.955,-27.0927,0	1/1:76:0,76:0:0:76:2679:-241.251,-22.8783,0
chr07	535313	.	G	A	126794	PASS	AB=0.484654;ABP=13.2073;AC=138;AF=0.734043;AN=188;AO=6128;CIGAR=1X;DP=8703;DPB=8703;DPRA=93.5699;EPP=13214.4;EPPR=5575.02;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.9243;MQMR=59.9845;NS=94;NUMALT=1;ODDS=0.931953;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219105;QR=91769;RO=2574;RPL=6117;RPP=13214.4;RPPR=5575.02;RPR=11;RUN=1;SAF=6128;SAP=13309.8;SAR=0;SRF=2574;SRP=5592.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:464:14:500:-37.2084,0,-33.9697	0/1:117:59,58:59:2116:58:2076:-151.62,0,-155.48	0/1:312:149,163:149:5299:163:5827:-430.567,0,-383.124	0/1:246:108,138:108:3839:138:4937:-370.23,0,-271.655	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:79:43,36:43:1531:36:1292:-92.8,0,-114.299	1/1:118:0,118:0:0:118:4229:-380.788,-35.5215,0	1/1:79:0,79:0:0:79:2812:-253.318,-23.7814,0	1/1:71:1,70:1:36:70:2512:-222.734,-17.7749,0	1/1:61:0,61:0:0:61:2176:-195.977,-18.3628,0	0/1:93:45,48:45:1605:48:1724:-127.45,0,-116.742	0/1:79:46,33:46:1624:33:1188:-83.4472,0,-122.665	0/1:76:31,45:31:1112:45:1608:-122.132,0,-77.5131	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	0/1:62:31,31:31:1112:31:1112:-81.7275,0,-81.7275	0/1:43:20,23:20:711:23:828:-61.8989,0,-51.3714	0/1:29:12,17:12:428:17:603:-45.8696,0,-30.1289	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:243:1,242:1:36:242:8654:-775.253,-69.552,0	1/1:149:0,149:0:0:149:5309:-477.757,-44.8535,0	0/1:152:111,41:111:3963:41:1464:-86.2995,0,-311.105	0/1:145:83,62:83:2972:62:2196:-154.256,0,-223.993	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	0/1:47:23,24:23:815:24:864:-63.9342,0,-59.5224	1/1:217:0,217:0:0:217:7764:-698.791,-65.3235,0	0/1:189:100,89:100:3562:89:3177:-229.258,0,-263.893	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	0/1:265:129,136:129:4600:136:4880:-359.578,0,-334.391	0/1:151:70,81:70:2512:81:2908:-216.495,0,-180.876	1/1:174:0,174:0:0:174:6234:-561.132,-52.3792,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/1:140:68,72:68:2429:72:2576:-189.839,0,-176.72	0/1:125:57,68:57:2035:68:2432:-181.507,0,-145.793	1/1:52:0,52:0:0:52:1824:-164.439,-15.6536,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:146:70,76:70:2489:76:2716:-200.646,0,-180.312	0/1:39:17,22:17:597:22:792:-59.8655,0,-42.316	1/1:163:0,163:0:0:163:5803:-522.388,-49.0679,0	1/1:71:0,71:0:0:71:2531:-228.041,-21.3731,0	1/1:61:1,60:1:36:60:2152:-190.347,-14.7646,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:141:0,141:0:0:141:5039:-453.649,-42.4452,0	1/1:138:0,138:0:0:138:4930:-443.806,-41.5421,0	0/1:70:33,37:33:1180:37:1323:-98.2992,0,-85.4359	0/1:149:72,77:72:2576:77:2768:-204.507,0,-187.236	0/1:117:66,51:66:2360:51:1815:-128.405,0,-177.438	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:139:0,139:0:0:139:4975:-447.895,-41.8432,0	0/1:92:41,51:41:1464:51:1813:-135.756,0,-104.361	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:181:95,86:95:3387:86:3072:-222.091,0,-250.559	0/1:27:15,12:15:536:12:428:-30.731,0,-40.447	0/1:14:4,10:4:140:10:360:-28.5299,0,-8.73016	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:45:23,22:23:820:22:788:-57.6984,0,-60.5762	1/1:94:0,94:0:0:94:3376:-304.051,-28.2968,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:164:82,81:82:2911:81:2882:-210.316,0,-212.923	1/1:139:0,139:0:0:139:4969:-447.247,-41.8432,0	0/1:56:30,26:30:1072:26:932:-67.3412,0,-79.9348	1/1:118:1,117:1:32:117:4196:-374.619,-32.3222,0	0/1:212:110,102:110:3915:102:3660:-265.784,0,-288.726	0/1:197:121,76:121:4324:76:2732:-186.819,0,-330.034	0/1:39:21,18:21:739:18:648:-46.9117,0,-55.0922	0/1:60:29,31:29:1040:31:1108:-81.9692,0,-75.8526	0/1:39:14,25:14:504:25:900:-69.5808,0,-33.9579	1/1:34:0,34:0:0:34:1210:-109.204,-10.235,0	0/1:86:49,37:49:1756:37:1328:-93.9291,0,-132.435	0/1:55:20,35:20:716:35:1245:-95.7895,0,-48.2111	1/1:178:0,178:0:0:178:6375:-573.839,-53.5833,0	0/1:202:117,85:117:4166:85:3043:-213.292,0,-314.315	0/1:102:53,49:53:1887:49:1732:-125.46,0,-139.403	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:125:1,124:1:36:124:4437:-395.902,-34.0305,0	1/1:132:0,132:0:0:132:4711:-424.149,-39.736,0	1/1:161:0,161:0:0:161:5775:-519.864,-48.4658,0	0/1:55:33,22:33:1184:22:784:-54.3273,0,-90.3117	0/1:79:50,29:50:1787:29:1044:-70.4911,0,-137.331	1/1:47:0,47:0:0:47:1675:-151.036,-14.1484,0	0/1:110:48,62:48:1685:62:2228:-167.671,0,-118.821	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:69:0,69:0:0:69:2441:-219.754,-20.7711,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	0/1:55:24,31:24:843:31:1087:-81.5734,0,-59.6313	0/1:96:55,41:55:1963:41:1459:-102.702,0,-148.046	0/1:89:66,23:66:2355:23:816:-46.97,0,-185.417	1/1:121:0,121:0:0:121:4306:-387.71,-36.4246,0	1/1:83:0,83:0:0:83:2961:-266.723,-24.9855,0
chr07	605717	.	GAC	AAG,GAG	118368	PASS	AB=0.497751,0.50015;ABP=3.1568,3.01095;AC=122,66;AF=0.648936,0.351064;AN=188;AO=3967,1741;CIGAR=1X1M1X,2M1X;DP=5725;DPB=5726;DPRA=15.6951,1.32889;EPP=8617.24,3783.54;EPPR=9.52472;GTI=4;LEN=3,1;MEANALT=1.94505,2.10526;MQM=59.9461,59.9937;MQMR=60;NS=94;NUMALT=2;ODDS=0.716295;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=72,0;PQR=0;PRO=0;QA=139784,62202;QR=106;RO=3;RPL=3967,1741;RPP=8617.24,3783.54;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=3967,1741;SAP=8617.24,3783.54;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,7,15:0:0:7,15:240,536:-63.5387,-44.0594,-41.9522,-19.8266,0,-15.3112	1/2:79:0,40,39:0:0:40,39:1400,1404:-228.818,-114.919,-102.878,-114.254,0,-102.514	1/2:77:0,45,32:0:0:45,32:1568,1144:-221.145,-93.6366,-80.0902,-127.862,0,-118.229	1/2:141:0,62,79:0:0:62,79:2152,2832:-406.265,-231.337,-212.673,-175.28,0,-151.498	1/1:36:0,36,0:0:0:36,0:1281,0:-115.593,-10.8371,0,-115.593,-10.8371,-115.593	1/1:46:0,44,2:0:0:44,2:1545,72:-138.983,-13.2453,0,-133.107,-7.01066,-132.505	1/2:87:0,49,38:0:0:49,38:1719,1354:-250.609,-110.72,-95.969,-140.244,0,-128.805	1/1:86:0,84,2:0:0:84,2:2958,63:-266.14,-25.2865,0,-261.075,-19.9054,-260.473	1/1:67:0,67,0:0:0:67,0:2362,0:-212.84,-20.169,0,-212.84,-20.169,-212.84	1/1:78:0,74,2:0:0:74,2:2595,72:-233.441,-22.2762,0,-227.566,-16.4014,-226.964	1/1:16:0,16,0:0:0:16,0:569,0:-51.5425,-4.81648,0,-51.5425,-4.81648,-51.5425	1/2:33:0,13,20:0:0:13,20:464,715:-96.4843,-58.6569,-54.7435,-38.1843,0,-32.1637	1/2:48:0,22,26:0:0:22,26:759,936:-138.386,-76.7327,-70.11,-62.0048,0,-54.178	1/2:31:0,21,10:0:0:21,10:750,360:-90.8796,-29.734,-23.4124,-61.5045,0,-58.4942	1/1:52:0,49,3:0:0:49,3:1731,108:-155.717,-14.7505,0,-146.904,-5.57839,-146.001	1/2:25:0,13,12:0:0:13,12:454,422:-71.6298,-34.7019,-30.7885,-37.2782,0,-33.6659	1/2:28:0,17,11:0:0:17,11:606,392:-81.7066,-32.3087,-27.1912,-49.7541,0,-46.4428	1/2:32:0,19,13:0:0:19,13:668,468:-92.9156,-38.5463,-32.8267,-54.7258,0,-50.8124	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:78:0,78,0:0:0:78,0:2751,0:-247.832,-23.4803,0,-247.832,-23.4803,-247.832	1/1:63:0,63,0:0:0:63,0:2222,0:-200.244,-18.9649,0,-200.244,-18.9649,-200.244	1/2:85:0,38,47:0:0:38,47:1335,1680:-245.995,-137.339,-125.9,-109.01,0,-94.8617	1/2:32:0,14,18:0:0:14,18:490,640:-92.3757,-52.5108,-48.2964,-40.2173,0,-34.7987	1/1:34:0,34,0:0:0:34,0:1191,0:-107.482,-10.235,0,-107.482,-10.235,-107.482	1/2:70:0,43,27:0:0:43,27:1516,964:-202.382,-78.949,-66.0047,-123.789,0,-115.661	1/1:255:0,253,1:0:0:253,1:8960,36:-805.993,-76.1606,0,-803.056,-73.1832,-802.755	1/2:151:0,78,73:0:0:78,73:2737,2616:-436.452,-213.712,-190.232,-223.094,0,-201.119	1/1:16:1,15,0:1:34:15,0:525,0:-44.1807,-1.41757,0,-44.4818,-4.51545,-47.2391	1/2:197:0,100,96:0:0:100,96:3549,3452:-570.785,-281.633,-251.53,-289.15,0,-260.251	1/2:87:0,55,32:0:0:55,32:1942,1148:-252.14,-93.9969,-77.4402,-158.499,0,-148.866	1/1:86:0,86,0:0:0:86,0:2993,0:-269.604,-25.8886,0,-269.604,-25.8886,-269.604	1/2:9:0,1,8:0:0:1,8:36,288:-26.7966,-23.8592,-23.5581,-3.29724,0,-0.889005	1/2:9:0,4,5:0:0:4,5:137,180:-26.1605,-15.0469,-13.8428,-11.4637,0,-9.95853	2/2:10:0,0,10:0:0:0,10:0,356:-32.3812,-32.3812,-32.3812,-3.0103,-3.0103,0	1/2:14:0,7,7:0:0:7,7:245,243:-40.0353,-20.1003,-17.9931,-20.2834,0,-18.1762	2/2:15:0,1,14:0:0:1,14:34,459:-41.2814,-38.5226,-38.2216,-4.21442,-1.11654,0	1/2:118:0,50,67:0:0:50,67:1768,2392:-339.023,-195.028,-179.977,-144.009,0,-123.84	1/2:185:0,87,98:0:0:87,98:3078,3515:-537.757,-287.053,-260.863,-251.059,0,-221.558	1/2:40:0,29,11:0:0:29,11:1036,392:-116.777,-32.3087,-23.5789,-84.8243,0,-81.513	1/2:5:0,2,3:0:0:2,3:68,108:-14.6799,-9.17208,-8.57002,-5.85565,0,-4.95256	1/2:73:0,28,45:0:0:28,45:974,1616:-211.372,-132.184,-123.755,-79.5403,0,-65.9939	1/2:24:0,11,13:0:0:11,13:388,464:-69.7759,-38.1841,-34.8728,-31.9463,0,-28.0329	1/2:58:0,38,20:0:0:38,20:1340,697:-166.14,-57.0301,-45.5909,-109.46,0,-103.439	1/2:28:0,15,13:0:0:15,13:531,460:-81.0758,-37.822,-33.3065,-43.6076,0,-39.6942	1/1:36:0,36,0:0:0:36,0:1290,0:-116.404,-10.8371,0,-116.404,-10.8371,-116.404	1/1:93:0,93,0:0:0:93,0:3305,0:-297.671,-27.9958,0,-297.671,-27.9958,-297.671	1/1:63:0,62,0:0:0:62,0:2186,0:-196.724,-18.6639,0,-196.724,-18.6639,-196.724	1/1:96:0,91,4:0:0:91,4:3216,144:-289.313,-27.3937,0,-277.563,-15.5149,-276.359	1/2:88:0,36,52:0:0:36,52:1255,1848:-253.008,-150.947,-140.109,-102.413,0,-86.7595	1/2:90:1,56,33:1:36:56,33:1979,1174:-253.606,-92.7346,-78.8145,-158.23,0,-151.234	1/2:42:0,17,25:0:0:17,25:610,896:-123.191,-73.4346,-68.3171,-50.1153,0,-42.5896	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:95:0,93,1:0:0:93,1:3271,36:-294.251,-27.9958,0,-291.314,-25.0584,-291.013	1/2:33:0,16,17:0:0:16,17:574,600:-96.0337,-49.2117,-44.3952,-47.1778,0,-42.0603	1/2:16:0,6,10:0:0:6,10:208,360:-46.6348,-29.734,-27.9278,-17.2523,0,-14.242	1/2:50:0,16,34:0:0:16,34:559,1220:-145.341,-99.8718,-95.0553,-45.8214,0,-35.5864	1/2:27:0,16,11:0:0:16,11:560,388:-77.5069,-31.946,-27.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chr07	609182	.	T	A	115415	PASS	AB=0.485923;ABP=11.019;AC=140;AF=0.744681;AN=188;AO=5623;CIGAR=1X;DP=8021;DPB=8021;DPRA=0;EPP=12213.2;EPPR=5208.03;GTI=4;LEN=1;MEANALT=1.01064;MQM=59.3377;MQMR=59.9433;NS=94;NUMALT=1;ODDS=0.549635;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201187;QR=85520;RO=2397;RPL=5623;RPP=12213.2;RPPR=5208.03;RPR=0;RUN=1;SAF=5623;SAP=12213.2;SAR=0;SRF=2397;SRP=5208.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:19,19:19:663:19:684:-50.4508,0,-48.5543	0/1:109:63,46:63:2224:46:1656:-115.303,0,-167.61	0/1:99:42,57:42:1472:57:2052:-155.121,0,-102.97	0/1:295:146,149:146:5231:149:5310:-389.082,0,-382.12	1/1:56:2,54:2:72:54:1944:-168.341,-10.021,0	1/1:38:0,38:0:0:38:1345:-121.317,-11.4391,0	0/1:107:63,44:63:2251:44:1561:-108.141,0,-170.642	1/1:112:0,112:0:0:112:4014:-361.079,-33.7154,0	1/1:62:0,62:0:0:62:2220:-199.996,-18.6639,0	1/1:91:0,91:0:0:91:3268:-294.287,-27.3937,0	1/1:46:0,46:0:0:46:1648:-148.544,-13.8474,0	0/1:56:27,29:27:960:29:1034:-76.5023,0,-69.8586	0/1:44:24,20:24:856:20:707:-50.7086,0,-64.1158	0/1:28:11,17:11:383:17:612:-46.9395,0,-26.3735	1/1:47:0,47:0:0:47:1680:-151.455,-14.1484,0	0/1:28:15,13:15:536:13:468:-33.9856,0,-40.146	0/1:44:23,21:23:824:21:756:-55.1219,0,-61.238	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	1/1:29:0,29:0:0:29:1032:-93.1619,-8.72987,0	1/1:191:1,190:1:36:190:6814:-607.474,-53.8985,0	1/1:182:0,182:0:0:182:6471:-582.117,-54.7875,0	0/1:117:86,31:86:3045:31:1105:-64.4751,0,-238.951	0/1:41:21,20:21:748:20:701:-51.0509,0,-55.3031	1/1:79:0,79:0:0:79:2831:-253.709,-23.7814,0	0/1:37:23,14:23:828:14:504:-34.56,0,-63.6776	1/1:340:0,340:0:0:340:12195:-1096.43,-102.35,0	0/1:208:105,103:105:3768:103:3683:-268.978,0,-276.704	1/1:19:0,19:0:0:19:680:-61.513,-5.71957,0	0/1:337:182,155:182:6510:155:5568:-399.722,0,-484.528	0/1:169:77,92:77:2755:92:3300:-246.237,0,-197.317	1/1:102:0,102:0:0:102:3654:-328.659,-30.7051,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:20:0,20:0:0:20:704:-63.6561,-6.0206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:130:57,73:57:2007:73:2616:-196.086,0,-141.765	0/1:172:67,105:67:2395:105:3761:-286.767,0,-164.029	1/1:38:0,38:0:0:38:1360:-122.69,-11.4391,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:146:71,75:71:2544:75:2696:-198.894,0,-185.26	0/1:25:13,12:13:464:12:432:-31.5801,0,-34.5718	0/1:110:54,56:54:1916:56:2008:-147.81,0,-139.601	0/1:53:25,28:25:891:28:1004:-74.7162,0,-64.5542	1/1:33:0,33:0:0:33:1179:-106.368,-9.93399,0	1/1:83:0,83:0:0:83:2980:-268.154,-24.9855,0	1/1:88:0,88:0:0:88:3164:-284.617,-26.4906,0	1/1:172:0,172:0:0:172:6155:-553.857,-51.7772,0	0/1:122:58,64:58:2088:64:2281:-168.807,0,-151.464	0/1:173:110,63:110:3939:63:2260:-151.497,0,-302.622	0/1:176:80,96:80:2876:96:3427:-254.752,0,-206.087	1/1:3:0,3:0:0:3:104:-9.69544,-0.90309,0	1/1:111:0,111:0:0:111:3944:-355.075,-33.4143,0	0/1:18:11,7:11:396:7:252:-17.5926,0,-30.5642	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:163:82,81:82:2924:81:2900:-212.148,0,-214.328	0/1:47:22,25:22:792:25:896:-66.759,0,-57.4573	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:12:0,12:0:0:12:417:-37.7736,-3.61236,0	0/1:38:22,16:22:764:16:564:-39.5191,0,-57.6376	1/1:79:1,78:1:36:78:2792:-247.852,-20.1831,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:285:140,145:140:5019:145:5170:-379.596,0,-365.956	1/1:104:0,104:0:0:104:3694:-332.14,-31.3071,0	0/1:40:21,19:21:752:19:684:-49.8491,0,-55.9651	1/1:55:1,54:1:36:54:1917:-169.123,-12.9584,0	0/1:134:60,74:60:2147:74:2660:-199.282,0,-153.159	0/1:118:83,35:83:2976:35:1260:-78.1839,0,-232.551	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:86:29,57:29:1025:57:2043:-158.101,0,-66.6721	0/1:47:26,21:26:923:21:756:-54.2106,0,-69.2302	1/1:18:1,17:1:21:17:612:-53.3126,-3.31859,0	0/1:103:58,44:58:2071:44:1561:-109.397,0,-155.595	0/1:70:29,41:29:1044:41:1476:-112.042,0,-73.2027	1/1:102:0,102:0:0:102:3659:-329.388,-30.7051,0	0/1:207:118,89:118:4221:89:3196:-225.479,0,-317.755	0/1:74:31,43:31:1107:43:1544:-116.932,0,-77.6639	1/1:109:0,109:0:0:109:3897:-350.92,-32.8123,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:118:0,118:0:0:118:4240:-381.555,-35.5215,0	1/1:138:0,138:0:0:138:4916:-442.5,-41.5421,0	1/1:227:0,227:0:0:227:8087:-727.631,-68.3338,0	0/1:65:35,30:35:1232:30:1076:-77.5743,0,-91.6143	0/1:37:24,13:24:845:13:449:-29.5993,0,-65.229	1/1:76:0,76:0:0:76:2724:-245.26,-22.8783,0	0/1:102:55,47:55:1972:47:1666:-118.968,0,-147.05	1/1:41:0,41:0:0:41:1461:-131.784,-12.3422,0	1/1:58:0,58:0:0:58:2088:-188.166,-17.4597,0	1/1:53:0,53:0:0:53:1904:-171.392,-15.9546,0	0/1:21:12,9:12:428:9:324:-23.1842,0,-32.5372	0/1:42:18,24:18:632:24:864:-65.4047,0,-43.3679	0/1:47:30,17:30:1047:17:608:-40.9036,0,-80.3908	1/1:140:0,140:0:0:140:5018:-451.741,-42.1442,0	1/1:64:0,64:0:0:64:2296:-206.875,-19.2659,0
chr07	609197	.	G	T	112792	PASS	AB=0.486557;ABP=10.1911;AC=140;AF=0.744681;AN=188;AO=5549;CIGAR=1X;DP=7906;DPB=7906;DPRA=0;EPP=12052.5;EPPR=5119;GTI=4;LEN=1;MEANALT=1.01064;MQM=59.3948;MQMR=59.9635;NS=94;NUMALT=1;ODDS=0.276202;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197273;QR=83456;RO=2356;RPL=5549;RPP=12052.5;RPPR=5119;RPR=0;RUN=1;SAF=5549;SAP=12052.5;SAR=0;SRF=2356;SRP=5119;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:18,19:18:631:19:680:-50.3909,0,-45.9776	0/1:105:60,45:60:2132:45:1595:-111.019,0,-160.54	0/1:96:42,54:42:1487:54:1924:-144.516,0,-105.225	0/1:290:143,147:143:5054:147:5189:-379.636,0,-367.708	1/1:57:2,55:2:72:55:1955:-169.327,-10.322,0	1/1:38:0,38:0:0:38:1360:-122.656,-11.4391,0	0/1:104:60,44:60:2119:44:1552:-108.624,0,-159.672	1/1:110:0,110:0:0:110:3906:-351.691,-33.1133,0	1/1:58:0,58:0:0:58:2034:-183.198,-17.4597,0	1/1:92:0,92:0:0:92:3237:-291.514,-27.6948,0	1/1:43:0,42:0:0:42:1504:-135.249,-12.6433,0	0/1:54:26,28:26:919:28:978:-72.0516,0,-66.7705	0/1:43:23,20:23:824:20:720:-52.1829,0,-61.539	0/1:28:12,16:12:410:16:572:-43.3846,0,-28.7977	1/1:49:0,49:0:0:49:1747:-157.481,-14.7505,0	0/1:27:14,13:14:500:13:452:-32.8647,0,-37.2084	0/1:43:22,21:22:784:21:756:-55.4229,0,-57.9396	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	1/1:28:0,28:0:0:28:987:-89.1248,-8.42884,0	1/1:189:1,188:1:36:188:6718:-600.36,-53.2964,0	1/1:180:0,180:0:0:180:6394:-575.127,-54.1854,0	0/1:114:84,30:84:2976:30:1058:-60.9769,0,-233.757	0/1:42:21,21:21:752:21:741:-54.3043,0,-55.363	1/1:81:0,81:0:0:81:2879:-258.27,-24.3834,0	0/1:39:25,14:25:876:14:500:-33.596,0,-67.4053	1/1:333:0,333:0:0:333:11873:-1067.41,-100.243,0	0/1:201:99,102:99:3510:102:3621:-265.5,0,-255.605	1/1:19:0,19:0:0:19:668:-60.4378,-5.71957,0	0/1:328:174,154:174:6166:154:5486:-395.077,0,-456.302	0/1:166:74,92:74:2633:92:3269:-244.371,0,-187.245	1/1:98:0,98:0:0:98:3488:-313.962,-29.5009,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:19:0,19:0:0:19:680:-61.5007,-5.71957,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:129:55,74:55:1936:74:2627:-197.364,0,-135.681	0/1:168:67,101:67:2357:101:3554:-269.434,0,-161.815	1/1:38:0,38:0:0:38:1368:-123.397,-11.4391,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:141:68,73:68:2395:73:2604:-192.135,0,-173.363	0/1:25:13,12:13:455:12:432:-31.5801,0,-33.7562	0/1:109:54,55:54:1912:55:1972:-144.889,0,-139.545	0/1:53:25,28:25:873:28:976:-72.1922,0,-62.9299	1/1:34:0,34:0:0:34:1202:-108.459,-10.235,0	1/1:81:0,81:0:0:81:2871:-258.617,-24.3834,0	1/1:89:0,89:0:0:89:3178:-285.889,-26.7917,0	1/1:170:0,170:0:0:170:6052:-544.605,-51.1751,0	0/1:120:56,64:56:1990:64:2226:-164.445,0,-143.249	0/1:174:110,64:110:3931:64:2277:-152.702,0,-301.601	0/1:176:81,95:81:2867:95:3376:-250.842,0,-205.279	1/1:3:0,3:0:0:3:98:-9.14143,-0.90309,0	1/1:114:0,114:0:0:114:4062:-365.689,-34.3174,0	0/1:18:11,7:11:388:7:252:-17.5926,0,-29.8388	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:163:83,80:83:2912:80:2864:-208.916,0,-213.246	0/1:46:22,24:22:772:24:864:-64.1823,0,-55.9539	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:12:0,12:0:0:12:428:-38.7638,-3.61236,0	0/1:37:21,16:21:752:16:576:-40.5441,0,-56.8681	1/1:80:2,78:2:72:78:2761:-241.807,-17.2457,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:274:137,137:137:4808:137:4888:-357.296,0,-350.396	1/1:102:0,102:0:0:102:3633:-326.382,-30.7051,0	0/1:40:21,19:21:747:19:680:-49.488,0,-55.5131	1/1:54:1,53:1:36:53:1876:-165.441,-12.6573,0	0/1:133:60,73:60:2135:73:2587:-193.013,0,-152.381	0/1:119:84,35:84:2990:35:1256:-77.5227,0,-233.509	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:83:26,57:26:910:57:2036:-158.355,0,-57.2286	0/1:46:25,21:25:892:21:756:-54.5117,0,-66.7441	1/1:18:1,17:1:36:17:612:-51.8142,-1.82027,0	0/1:103:58,45:58:2063:45:1599:-113.035,0,-154.934	0/1:69:28,41:28:1008:41:1463:-111.172,0,-70.2653	1/1:102:0,102:0:0:102:3624:-326.174,-30.7051,0	0/1:206:120,86:120:4266:86:3059:-213.455,0,-322.108	0/1:73:30,43:30:1064:43:1531:-116.082,0,-74.0965	1/1:108:0,108:0:0:108:3835:-345.349,-32.5112,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:115:0,115:0:0:115:4102:-369.178,-34.6185,0	1/1:135:0,135:0:0:135:4806:-432.4,-40.6391,0	1/1:229:0,229:0:0:229:8144:-732.742,-68.9359,0	0/1:63:34,29:34:1212:29:1035:-74.4973,0,-90.4214	0/1:36:25,11:25:883:11:392:-24.7783,0,-68.9504	1/1:72:0,72:0:0:72:2552:-229.841,-21.6742,0	0/1:99:54,45:54:1910:45:1580:-112.525,0,-142.374	1/1:40:0,40:0:0:40:1409:-127.105,-12.0412,0	1/1:55:0,55:0:0:55:1968:-177.371,-16.5567,0	1/1:52:0,52:0:0:52:1860:-167.521,-15.6536,0	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:43:19,24:19:675:24:860:-64.7429,0,-47.3515	0/1:46:29,17:29:1036:17:612:-41.5661,0,-79.7065	1/1:140:0,140:0:0:140:4932:-444.004,-42.1442,0	1/1:63:0,63:0:0:63:2255:-203.193,-18.9649,0
chr07	611053	.	T	C	87434.4	PASS	AB=0.556588;ABP=86.8141;AC=140;AF=0.744681;AN=188;AO=4212;CIGAR=1X;DP=5554;DPB=5554;DPRA=0;EPP=9149.25;EPPR=2906.27;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9727;MQMR=60;NS=94;NUMALT=1;ODDS=3.74602;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150050;QR=47550;RO=1337;RPL=4212;RPP=9149.25;RPPR=2906.27;RPR=0;RUN=1;SAF=0;SAP=9149.25;SAR=4212;SRF=0;SRP=2906.27;SRR=1337;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	0/1:42:18,24:18:644:24:864:-65.4393,0,-45.6473	0/1:79:36,43:36:1296:43:1533:-114.479,0,-93.1626	0/1:140:67,73:67:2359:73:2620:-193.903,0,-170.42	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:61:18,43:18:648:43:1518:-118.546,0,-40.2891	1/1:57:0,57:0:0:57:2029:-182.88,-17.1587,0	1/1:69:0,69:0:0:69:2454:-221.111,-20.7711,0	1/1:57:0,57:0:0:57:2022:-182.249,-17.1587,0	1/1:45:0,44:0:0:44:1573:-141.648,-13.2453,0	0/1:74:34,40:34:1224:40:1440:-107.622,0,-88.1908	0/1:65:30,35:30:1080:35:1260:-94.1385,0,-77.9463	0/1:48:27,21:27:964:21:752:-53.5568,0,-72.6274	1/1:71:0,71:0:0:71:2556:-230.29,-21.3731,0	0/1:49:33,16:33:1184:16:567:-36.6103,0,-92.1178	0/1:23:10,13:10:345:13:468:-35.536,0,-24.4571	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:117:0,117:0:0:117:4181:-376.472,-35.2205,0	1/1:105:0,104:0:0:104:3699:-332.665,-31.3071,0	0/1:49:28,21:28:1000:21:741:-52.2611,0,-75.5649	0/1:58:20,38:20:697:38:1349:-104.249,0,-45.5909	1/1:42:0,42:0:0:42:1476:-133.132,-12.6433,0	0/1:30:13,17:13:438:17:582:-43.6679,0,-30.7087	1/1:205:0,203:0:0:203:7246:-651.906,-61.1091,0	0/1:141:55,86:55:1957:86:3050:-232.282,0,-133.958	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:166:64,102:64:2270:102:3615:-275.582,0,-154.588	0/1:37:12,25:12:413:25:900:-70.1829,0,-26.3597	1/1:62:0,62:0:0:62:2190:-197.363,-18.6639,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:153:71,82:71:2537:82:2929:-217.785,0,-182.522	0/1:75:28,47:28:1000:47:1677:-128.638,0,-67.7381	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:60:14,46:14:504:46:1648:-130.547,0,-27.6363	0/1:34:12,22:12:432:22:792:-61.3707,0,-28.9862	0/1:49:16,33:16:553:33:1153:-89.3214,0,-35.3435	0/1:33:15,18:15:540:18:644:-48.3566,0,-39.0025	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:77:0,77:0:0:77:2741:-246.931,-23.1793,0	1/1:52:0,52:0:0:52:1813:-163.445,-15.6536,0	1/1:128:0,128:0:0:128:4592:-413.444,-38.5318,0	0/1:55:26,29:26:928:29:1032:-76.6368,0,-67.2816	0/1:56:24,32:24:864:32:1152:-87.1325,0,-61.2249	0/1:85:39,46:39:1370:46:1648:-123.021,0,-98.007	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:91:0,90:0:0:90:3226:-290.095,-27.0927,0	0/1:33:15,18:15:540:18:644:-48.3566,0,-39.0025	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:69:20,49:20:690:49:1749:-136.921,0,-41.6457	0/1:33:16,17:16:568:17:581:-42.6754,0,-41.5179	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:49:18,31:18:648:31:1097:-84.2875,0,-43.9014	1/1:93:0,93:0:0:93:3348:-301.535,-27.9958,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:121:50,71:50:1777:71:2556:-193.865,0,-123.786	1/1:162:0,162:0:0:162:5730:-515.814,-48.7669,0	0/1:42:13,29:13:445:29:1029:-80.2779,0,-27.7321	1/1:46:0,46:0:0:46:1633:-147.257,-13.8474,0	0/1:96:35,61:35:1245:61:2181:-167.655,0,-83.4538	0/1:105:70,35:70:2460:35:1207:-77.3186,0,-190.04	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:23:11,12:11:366:12:432:-32.2975,0,-26.3348	0/1:32:20,12:20:716:12:432:-29.5882,0,-55.1348	1/1:27:0,27:0:0:27:957:-86.4439,-8.12781,0	0/1:83:24,59:24:860:59:2092:-163.561,0,-52.7363	0/1:94:40,54:40:1440:54:1921:-144.868,0,-101.601	1/1:73:0,73:0:0:73:2549:-229.654,-21.9752,0	0/1:118:54,64:54:1910:64:2303:-172.009,0,-136.652	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	1/1:75:0,75:0:0:75:2666:-240.183,-22.5773,0	1/1:14:0,14:0:0:14:489:-44.3389,-4.21442,0	1/1:67:0,67:0:0:67:2347:-211.485,-20.169,0	1/1:45:0,45:0:0:45:1604:-144.591,-13.5464,0	1/1:154:0,154:0:0:154:5475:-492.876,-46.3586,0	0/1:48:26,22:26:936:22:792:-57.1562,0,-70.11	0/1:64:36,28:36:1296:28:1008:-71.7704,0,-97.678	1/1:32:0,32:0:0:32:1125:-101.555,-9.63296,0	0/1:94:46,48:46:1652:48:1728:-127.508,0,-120.672	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:52:0,52:0:0:52:1857:-167.408,-15.6536,0	1/1:53:0,53:0:0:53:1889:-170.286,-15.9546,0	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6107	0/1:59:32,27:32:1137:27:964:-69.3161,0,-84.8762	0/1:50:36,14:36:1281:14:504:-30.6466,0,-100.54	1/1:138:0,138:0:0:138:4877:-439.071,-41.5421,0	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0
chr07	708874	.	G	T	47607.6	PASS	AB=0.560424;ABP=158.624;AC=49;AF=0.260638;AN=188;AO=2760;CIGAR=1X;DP=8153;DPB=8153;DPRA=1.76858;EPP=5892.5;EPPR=11443.8;GTI=6;LEN=1;MEANALT=1.08621;MQM=59.9841;MQMR=59.9991;NS=94;NUMALT=1;ODDS=0.542782;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97652;QR=191656;RO=5388;RPL=2748;RPP=5892.5;RPPR=11443.8;RPR=12;RUN=1;SAF=0;SAP=5996.27;SAR=2760;SRF=0;SRP=11702.9;SRR=5388;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:27,29:27:959:29:1028:-75.9754,0,-69.7677	0/1:142:52,90:52:1868:90:3200:-245.465,0,-125.653	0/1:158:75,83:75:2687:83:2966:-219.61,0,-194.511	0/1:246:126,120:126:4503:120:4263:-309.796,0,-331.385	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.018	0/1:115:57,58:57:2027:58:2055:-150.603,0,-148.084	0/0:176:176,0:176:6219:0:0:0,-52.9813,-559.814	0/0:78:78,0:78:2764:0:0:0,-23.4803,-249.001	0/0:81:81,0:81:2861:0:0:0,-24.3834,-257.728	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:44:23,21:23:828:21:739:-53.5871,0,-61.5988	0/1:45:21,24:21:756:24:847:-63.0024,0,-54.8209	0/1:42:22,20:22:788:20:720:-52.4855,0,-58.6015	0/0:26:26,0:26:908:0:0:0,-7.82678,-82.0325	0/1:16:6,10:6:216:10:343:-26.3841,0,-14.974	0/1:47:21,25:21:752:25:896:-66.7532,0,-53.7991	0/1:25:10,15:10:360:15:540:-41.4108,0,-25.2186	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:125:123,2:123:4383:2:72:0,-30.792,-387.808	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.155	0/1:231:78,152:78:2787:152:5358:-412.763,0,-181.474	0/1:104:51,52:51:1790:52:1810:-131.814,0,-130.015	0/0:108:107,1:107:3778:1:36:0,-28.913,-336.624	0/1:70:31,38:31:1104:38:1352:-100.85,0,-78.5399	0/0:302:301,1:301:10648:1:36:0,-87.3128,-954.646	0/1:228:122,106:122:4368:106:3732:-267.451,0,-324.659	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:311:155,156:155:5527:156:5511:-402.504,0,-403.937	0/1:109:66,43:66:2364:43:1528:-105.001,0,-180.206	0/0:107:107,0:107:3832:0:0:0,-32.2102,-345.077	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/1:16:5,11:5:176:11:392:-30.8036,0,-11.3685	0/1:109:42,67:42:1500:67:2379:-181.556,0,-102.482	0/1:275:125,150:125:4472:150:5307:-394.988,0,-319.867	0/0:41:41,0:41:1458:0:0:0,-12.3422,-131.515	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:139:60,79:60:2143:79:2805:-210.846,0,-151.294	0/1:34:11,23:11:392:23:824:-64.2483,0,-25.385	0/1:170:55,115:55:1951:115:4096:-317.653,0,-124.69	0/1:40:9,31:9:320:31:1080:-85.4646,0,-17.1012	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/0:120:120,0:120:4256:0:0:0,-36.1236,-383.22	0/0:127:126,1:126:4460:1:36:0,-34.6325,-397.975	0/0:231:231,0:231:8211:0:0:0,-69.5379,-739.007	0/1:99:49,50:49:1752:50:1764:-129.241,0,-128.162	0/1:111:58,53:58:2067:53:1875:-135.614,0,-152.886	0/1:215:102,113:102:3624:113:3984:-293.902,0,-261.647	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:125:125,0:125:4468:0:0:0,-37.6287,-402.291	0/1:44:10,34:10:352:34:1200:-95.0603,0,-18.7729	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/1:143:75,68:75:2683:68:2392:-172.492,0,-198.667	0/1:82:43,39:43:1536:39:1371:-99.0025,0,-113.849	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:92:40,52:40:1407:52:1856:-139.625,0,-99.2317	0/0:47:46,1:46:1629:1:36:0,-10.5501,-143.299	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:140:29,111:29:1032:111:3915:-310.404,0,-51.0493	0/0:200:200,0:200:7107:0:0:0,-60.206,-639.696	0/1:62:34,28:34:1216:28:996:-71.291,0,-91.0827	0/0:92:91,1:91:3238:1:32:0,-24.4954,-288.442	0/1:186:67,119:67:2400:119:4215:-323.54,0,-160.265	0/1:141:58,83:58:2076:83:2941:-222.48,0,-144.665	0/1:9:3,6:3:108:6:199:-15.5262,0,-7.3659	0/1:90:34,56:34:1199:56:1984:-151.742,0,-81.1221	0/1:41:16,25:16:564:25:879:-67.0846,0,-38.7481	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:123:62,61:62:2203:61:2153:-157.009,0,-161.508	0/1:71:46,25:46:1640:25:876:-57.7839,0,-126.516	0/0:114:114,0:114:4029:0:0:0,-34.3174,-362.802	0/1:141:69,72:69:2459:72:2564:-188.565,0,-179.119	0/1:78:31,47:31:1099:47:1640:-124.406,0,-75.7391	0/0:68:67,1:67:2388:1:36:0,-16.8718,-211.576	0/0:16:16,0:16:559:0:0:0,-4.81648,-50.6376	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/0:132:132,0:132:4695:0:0:0,-39.736,-422.713	0/0:231:229,1:229:8111:1:36:0,-65.9984,-726.418	0/1:42:16,26:16:567:26:924:-70.8344,0,-38.7175	0/1:35:12,23:12:428:23:812:-62.8649,0,-28.3228	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.646	0/1:69:19,50:19:654:50:1780:-139.712,0,-38.409	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:28:12,16:12:424:16:553:-41.6652,0,-30.0676	0/1:40:6,34:6:216:34:1220:-98.0656,0,-7.74931	0/1:42:7,35:7:252:35:1220:-97.4596,0,-10.3857	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:28:27,1:27:945:1:32:0,-5.22953,-82.1629
chr07	708880	.	G	A	51388.8	PASS	AB=0.574263;ABP=246.836;AC=49;AF=0.260638;AN=188;AO=2930;CIGAR=1X;DP=8372;DPB=8372;DPRA=1.73477;EPP=6339.39;EPPR=11729.1;GTI=7;LEN=1;MEANALT=1.03571;MQM=59.9816;MQMR=60;NS=94;NUMALT=1;ODDS=0.657631;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104679;QR=194407;RO=5440;RPL=2927;RPP=6339.39;RPPR=11729.1;RPR=3;RUN=1;SAF=0;SAP=6365.42;SAR=2930;SRF=0;SRP=11815.8;SRR=5440;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:25,30:25:887:30:1076:-80.5962,0,-63.5915	0/1:154:53,101:53:1900:101:3571:-275.237,0,-124.919	0/1:163:75,88:75:2681:88:3132:-233.037,0,-192.465	0/1:249:127,122:127:4525:122:4362:-317.783,0,-332.461	0/0:47:46,1:46:1639:1:36:0,-10.5501,-144.2	0/0:81:81,0:81:2885:0:0:0,-24.3834,-259.885	0/1:118:58,60:58:2075:60:2152:-158.426,0,-151.498	0/0:182:182,0:182:6494:0:0:0,-54.7875,-584.546	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:44:23,21:23:828:21:756:-55.1219,0,-61.5988	0/1:45:21,24:21:756:24:852:-63.454,0,-54.8209	0/1:44:22,22:22:792:22:784:-57.6386,0,-58.3604	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:17:6,11:6:216:11:387:-30.0484,0,-14.673	0/1:43:20,23:20:716:23:828:-61.8998,0,-51.8234	0/1:25:10,15:10:360:15:536:-41.0491,0,-25.2186	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:128:127,1:127:4531:1:36:0,-34.9336,-404.36	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.726	0/1:245:79,166:79:2808:166:5953:-462.123,0,-179.206	0/1:108:51,57:51:1817:57:2035:-150.91,0,-131.298	0/0:108:108,0:108:3833:0:0:0,-32.5112,-345.168	0/1:71:32,39:32:1144:39:1391:-104.115,0,-81.8964	0/0:305:304,1:304:10861:1:36:0,-88.2159,-973.794	0/1:234:120,114:120:4292:114:4042:-293.525,0,-316.017	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:322:156,166:156:5592:166:5930:-436.875,0,-406.47	0/1:111:66,45:66:2363:45:1612:-111.956,0,-179.513	0/0:109:109,0:109:3900:0:0:0,-32.8123,-351.194	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:111:43,68:43:1544:68:2416:-184.281,0,-105.839	0/1:288:128,160:128:4592:160:5712:-427.5,0,-326.747	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:148:62,86:62:2228:86:3071:-232.066,0,-156.231	0/1:34:11,23:11:392:23:813:-63.2541,0,-25.385	0/1:178:55,123:55:1968:123:4420:-344.387,0,-123.812	0/1:41:9,32:9:324:32:1143:-90.8365,0,-17.1636	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:116:116,0:116:4176:0:0:0,-34.9195,-376.02	0/0:128:128,0:128:4562:0:0:0,-38.5318,-410.747	0/0:228:228,0:228:8127:0:0:0,-68.6348,-731.447	0/1:103:51,52:51:1823:52:1868:-137.393,0,-133.344	0/1:116:59,57:59:2098:57:2048:-149.672,0,-154.169	0/1:219:102,117:102:3639:117:4160:-308.032,0,-261.79	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.8	0/1:45:10,35:10:360:35:1256:-99.7989,0,-19.198	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:149:72,77:72:2571:77:2756:-203.428,0,-186.786	0/1:81:42,39:42:1499:39:1373:-99.4832,0,-110.82	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:96:41,55:41:1476:55:1976:-149.216,0,-104.237	0/0:49:48,1:48:1728:1:36:0,-11.1522,-152.207	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:152:30,122:30:1072:122:4360:-346.819,0,-51.0359	0/0:202:202,0:202:7227:0:0:0,-60.8081,-650.484	0/1:62:34,28:34:1216:28:1000:-71.6515,0,-91.0827	0/0:95:93,1:93:3313:1:36:0,-25.0584,-294.79	0/1:194:65,129:65:2332:129:4600:-355.764,0,-151.74	0/1:147:58,89:58:2071:89:3204:-244.33,0,-142.409	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:93:35,58:35:1260:58:2070:-158.574,0,-85.7097	0/1:46:16,30:16:568:30:1072:-82.9451,0,-37.6045	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:127:64,63:64:2292:63:2241:-163.721,0,-168.311	0/1:73:46,27:46:1611:27:968:-65.4622,0,-123.3	0/0:116:116,0:116:4131:0:0:0,-34.9195,-371.976	0/1:145:70,75:70:2488:75:2696:-199.234,0,-180.522	0/1:86:34,52:34:1220:52:1849:-140.799,0,-84.2182	0/0:69:68,1:68:2423:1:36:0,-17.1728,-214.727	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:110:110,0:110:3909:0:0:0,-33.1133,-352.002	0/0:133:133,0:133:4760:0:0:0,-40.037,-428.558	0/0:235:234,1:234:8378:1:36:0,-67.1438,-750.426	0/1:45:16,29:16:563:29:1040:-80.368,0,-37.4528	0/1:38:13,25:13:468:25:896:-69.5212,0,-31.0205	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/1:72:19,53:19:680:53:1900:-149.604,0,-39.855	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/1:41:6,35:6:216:35:1248:-100.283,0,-7.44828	0/1:44:7,36:7:243:36:1288:-102.919,0,-8.90497	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759
chr07	730544	.	C	T	40462.9	PASS	AB=0.47204;ABP=38.2245;AC=50;AF=0.265957;AN=188;AO=2455;CIGAR=1X;DP=9807;DPB=9807;DPRA=0.975107;EPP=5333.98;EPPR=15967.7;GTI=1;LEN=1;MEANALT=1;MQM=59.9837;MQMR=59.9871;NS=94;NUMALT=1;ODDS=8.58722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87754;QR=263312;RO=7352;RPL=0;RPP=5333.98;RPPR=15967.7;RPR=2455;RUN=1;SAF=2455;SAP=5333.98;SAR=0;SRF=7352;SRP=15967.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:14,9:14:500:9:309:-21.217,0,-38.4125	0/1:176:82,94:82:2940:94:3367:-250.264,0,-211.853	0/1:123:64,59:64:2300:59:2108:-152.963,0,-170.234	0/1:214:115,99:115:4124:99:3540:-254.388,0,-306.923	0/0:32:30,2:30:1076:2:72:0,-2.79624,-90.3161	0/0:50:49,1:49:1748:1:36:0,-11.4532,-154.006	0/1:149:62,87:62:2232:87:3103:-234.643,0,-156.29	0/0:233:233,0:233:8360:0:0:0,-70.14,-752.395	0/0:97:96,1:96:3436:1:36:0,-25.6016,-305.855	0/0:144:144,0:144:5152:0:0:0,-43.3483,-463.822	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:92:57,35:57:2052:35:1260:-86.0107,0,-157.257	0/1:70:41,29:41:1468:29:1032:-72.1214,0,-111.344	0/1:89:55,34:55:1976:34:1220:-83.3151,0,-151.323	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/1:43:26,17:26:936:17:612:-42.4691,0,-71.6152	0/1:54:33,21:33:1180:21:715:-48.4056,0,-90.2524	0/1:62:40,22:40:1436:22:788:-52.5809,0,-110.874	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:220:220,0:220:7868:0:0:0,-66.2266,-708.145	0/0:173:173,0:173:6188:0:0:0,-52.0782,-557.018	0/1:122:29,93:29:1032:93:3344:-264.449,0,-56.4678	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	0/0:141:141,0:141:5036:0:0:0,-42.4452,-453.387	0/1:83:41,42:41:1468:42:1504:-110.669,0,-107.431	0/0:408:408,0:408:14580:0:0:0,-122.82,-1311.95	0/1:203:116,87:116:4164:87:3112:-219.198,0,-313.832	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:314:134,180:134:4788:180:6446:-485.702,0,-336.554	0/1:135:75,60:75:2688:60:2143:-152.497,0,-201.526	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8133	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:182:130,52:130:4656:52:1863:-113.161,0,-364.414	0/1:160:79,81:79:2836:81:2893:-212.44,0,-207.313	0/0:95:95,0:95:3392:0:0:0,-28.5978,-305.496	0/1:8:4,4:4:144:4:136:-10.1673,0,-10.9054	0/1:140:77,63:77:2760:63:2264:-161.878,0,-206.497	0/1:35:16,19:16:576:19:660:-49.1854,0,-41.6389	0/1:124:61,63:61:2176:63:2234:-163.994,0,-158.779	0/1:61:43,18:43:1540:18:648:-40.2891,0,-120.53	0/0:81:81,0:81:2916:0:0:0,-24.3834,-262.674	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.892	0/0:194:193,1:193:6912:1:23:0,-56.1004,-619.847	0/1:120:80,40:80:2868:40:1427:-92.6032,0,-222.233	0/1:189:109,80:109:3908:80:2872:-201.822,0,-295.018	0/1:171:86,85:86:3084:85:3035:-221.904,0,-226.312	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/1:60:32,28:32:1132:28:996:-71.8925,0,-84.1268	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:162:77,85:77:2760:85:3039:-224.973,0,-199.875	0/1:38:29,9:29:1040:9:324:-18.0667,0,-82.4752	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:116:53,63:53:1904:63:2259:-168.652,0,-136.718	0/0:124:124,0:124:4432:0:0:0,-37.3277,-399.043	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:118:104,14:104:3728:14:504:-10.1766,0,-300.199	0/0:259:259,0:259:9288:0:0:0,-77.9668,-835.849	0/1:68:29,39:29:1040:39:1381:-104.117,0,-73.4443	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.772	0/1:141:60,81:60:2152:81:2896:-218.429,0,-151.502	0/1:150:49,101:49:1760:101:3612:-280.131,0,-113.529	0/1:29:19,10:19:680:10:360:-24.0144,0,-52.7993	0/1:71:33,38:33:1188:38:1349:-100.335,0,-85.8555	0/1:84:46,38:46:1640:38:1364:-97.7742,0,-122.602	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:100:42,58:42:1496:58:2080:-157.367,0,-104.832	0/1:86:60,26:60:2144:26:927:-57.8588,0,-167.339	0/0:249:249,0:249:8912:0:0:0,-74.9565,-802.063	0/1:178:89,89:89:3192:89:3172:-232.119,0,-233.92	0/1:107:44,63:44:1572:63:2253:-170.822,0,-109.561	0/0:193:193,0:193:6920:0:0:0,-58.0988,-622.865	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:144:144,0:144:5168:0:0:0,-43.3483,-465.259	0/0:119:117,2:117:4200:2:72:0,-28.9858,-371.326	0/0:208:208,0:208:7460:0:0:0,-62.6142,-671.442	0/1:88:54,34:54:1944:34:1224:-83.9764,0,-148.745	0/1:47:26,21:26:936:21:756:-54.2188,0,-70.4111	0/0:105:105,0:105:3748:0:0:0,-31.6081,-337.435	0/1:154:91,63:91:3244:63:2248:-156.223,0,-245.824	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:52:27,25:27:972:25:900:-65.6675,0,-72.1443	0/1:79:57,22:57:2040:22:792:-47.8243,0,-160.087	0/1:60:21,39:21:752:39:1400:-108.237,0,-49.9445	0/0:162:162,0:162:5756:0:0:0,-48.7669,-518.161	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.692
chr07	730582	.	A	G	153037	PASS	AB=0.523644;ABP=28.1681;AC=138;AF=0.734043;AN=188;AO=7308;CIGAR=1X;DP=9800;DPB=9800;DPRA=0;EPP=15776.7;EPPR=5368.75;GTI=1;LEN=1;MEANALT=1.08511;MQM=59.9873;MQMR=59.9807;NS=94;NUMALT=1;ODDS=7.69848;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261057;QR=88762;RO=2483;RPL=7298;RPP=15785.4;RPPR=5377.42;RPR=10;RUN=1;SAF=7307;SAP=15863.4;SAR=1;SRF=2482;SRP=5386.09;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:9,14:9:324:14:493:-37.7792,0,-22.5822	0/1:174:93,81:93:3308:81:2886:-207.597,0,-245.561	0/1:125:60,64:60:2128:64:2288:-168.494,0,-154.101	0/1:215:99,116:99:3527:116:4151:-309.051,0,-252.919	1/1:33:2,31:2:72:31:1108:-93.1937,-3.09727,0	1/1:51:1,50:1:36:50:1789:-157.693,-11.7543,0	0/1:144:85,59:85:3018:59:2120:-147.72,0,-228.503	1/1:228:0,228:0:0:228:8144:-732.974,-68.6348,0	1/1:98:4,94:4:144:94:3346:-288.044,-16.1873,0	1/1:140:2,138:2:72:138:4932:-437.195,-35.3075,0	1/1:79:0,79:0:0:79:2830:-254.938,-23.7814,0	0/1:94:38,56:38:1360:56:2012:-153.056,0,-94.4038	0/1:70:32,38:32:1144:38:1359:-101.538,0,-82.1974	0/1:86:32,54:32:1148:54:1936:-148.628,0,-77.7413	1/1:92:0,92:0:0:92:3271:-294.609,-27.6948,0	0/1:41:16,25:16:576:25:900:-68.9788,0,-39.8328	0/1:54:21,33:21:744:33:1179:-90.1616,0,-51.0216	0/1:62:22,40:22:792:40:1440:-111.234,0,-52.9418	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	1/1:222:1,220:1:36:220:7865:-704.277,-63.2892,0	1/1:169:0,168:0:0:168:6000:-539.787,-50.573,0	0/1:126:97,29:97:3464:29:1036:-55.6241,0,-274.043	0/1:30:14,16:14:489:16:576:-43.1441,0,-35.308	1/1:137:0,137:0:0:137:4900:-441.152,-41.2411,0	0/1:81:42,39:42:1504:39:1400:-101.916,0,-111.261	1/1:414:0,412:0:0:412:14724:-1324.58,-124.024,0	0/1:201:87,112:87:3111:112:4024:-302.082,0,-219.952	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:316:182,134:182:6523:134:4774:-334.691,0,-492.026	0/1:136:62,74:62:2224:74:2660:-198.705,0,-159.482	1/1:104:0,104:0:0:104:3711:-334.192,-31.3071,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:16:0,16:0:0:16:572:-51.813,-4.81648,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:181:52,129:52:1872:129:4628:-362.196,0,-114.273	0/1:162:83,79:83:2984:79:2804:-203.832,0,-220.025	1/1:93:2,91:2:72:91:3232:-284.265,-21.16,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:141:63,78:63:2260:78:2776:-207.634,0,-161.217	0/1:34:18,16:18:639:16:568:-41.2168,0,-47.6032	0/1:127:63,64:63:2252:64:2289:-168.04,0,-164.712	0/1:60:18,42:18:644:42:1508:-117.953,0,-40.2288	1/1:81:0,81:0:0:81:2888:-260.155,-24.3834,0	1/1:79:0,79:0:0:79:2805:-252.689,-23.7814,0	1/1:122:0,122:0:0:122:4355:-392.125,-36.7257,0	1/1:192:2,190:2:68:190:6804:-605.98,-51.3486,0	0/1:120:39,81:39:1391:81:2912:-226.191,0,-89.3646	0/1:192:82,110:82:2924:110:3952:-298.072,0,-205.598	0/1:171:85,86:85:3024:86:3092:-227.031,0,-220.913	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:117:0,117:0:0:117:4184:-376.74,-35.2205,0	0/1:59:28,31:28:1004:31:1107:-82.1794,0,-72.9151	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:160:86,74:86:3092:74:2633:-189.051,0,-230.342	0/1:38:10,28:10:360:28:996:-78.5144,0,-21.3052	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:26:0,26:0:0:26:927:-83.7474,-7.82678,0	0/1:115:63,52:63:2260:52:1861:-133.151,0,-169.044	1/1:124:0,124:0:0:124:4431:-398.956,-37.3277,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:117:14,103:14:500:103:3675:-295.733,0,-10.1157	1/1:259:0,259:0:0:259:9207:-828.59,-77.9668,0	0/1:69:40,29:40:1432:29:1036:-72.7828,0,-108.407	1/1:74:0,74:0:0:74:2607:-234.864,-22.2762,0	0/1:142:82,60:82:2940:60:2156:-151.561,0,-222.088	0/1:154:102,51:102:3657:51:1805:-116.313,0,-282.914	0/1:29:10,19:10:356:19:680:-52.7993,0,-23.6514	0/1:70:38,32:38:1353:32:1140:-81.8371,0,-100.996	0/1:84:38,46:38:1364:46:1639:-122.511,0,-97.7742	1/1:18:0,18:0:0:18:636:-57.568,-5.41854,0	0/1:97:56,41:56:2008:41:1450:-101.595,0,-151.793	0/1:83:27,56:27:964:56:1992:-154.567,0,-62.0913	1/1:248:0,248:0:0:248:8867:-798.016,-74.6554,0	0/1:178:91,87:91:3244:87:3128:-228.162,0,-238.599	0/1:109:64,45:64:2292:45:1616:-112.918,0,-173.712	1/1:194:1,193:1:36:193:6888:-616.392,-54.8015,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:140:0,140:0:0:140:5012:-451.227,-42.1442,0	1/1:121:2,118:2:72:118:4211:-372.333,-29.6467,0	1/1:207:0,207:0:0:207:7379:-664.158,-62.3132,0	0/1:88:34,54:34:1208:54:1944:-148.745,0,-82.5354	0/1:46:21,25:21:748:25:896:-67.113,0,-53.7979	1/1:103:0,103:0:0:103:3673:-330.767,-31.0061,0	0/1:154:63,91:63:2255:91:3232:-244.743,0,-156.854	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:92:0,92:0:0:92:3283:-295.69,-27.6948,0	1/1:82:0,82:0:0:82:2913:-262.404,-24.6845,0	0/1:53:27,26:27:956:26:936:-68.6049,0,-70.4011	0/1:78:20,58:20:716:58:2047:-161.015,0,-41.2874	0/1:60:39,21:39:1391:21:756:-50.3054,0,-107.426	1/1:165:2,163:2:68:163:5833:-518.624,-43.2122,0	1/1:96:0,96:0:0:96:3431:-309.003,-28.8989,0
chr07	730720	.	T	C	47863.5	PASS	AB=0.519192;ABP=20.4303;AC=50;AF=0.265957;AN=188;AO=2843;CIGAR=1X;DP=9459;DPB=9459;DPRA=1.60263;EPP=6176.51;EPPR=14363;GTI=4;LEN=1;MEANALT=1.01852;MQM=59.9532;MQMR=59.9873;NS=94;NUMALT=1;ODDS=0.590445;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100820;QR=235620;RO=6613;RPL=2842;RPP=6167.82;RPPR=14345.6;RPR=1;RUN=1;SAF=2842;SAP=6167.82;SAR=1;SRF=6611;SRP=14345.6;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:17,12:17:603:12:428:-30.1289,0,-45.8696	0/1:169:77,92:77:2751:92:3271:-243.108,0,-196.958	0/1:153:74,79:74:2630:79:2790:-205.281,0,-190.889	0/1:269:128,141:128:4553:141:4995:-368.723,0,-328.961	0/0:85:84,1:84:3007:1:36:0,-21.9893,-267.262	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/1:72:35,37:35:1239:37:1316:-97.0676,0,-90.1395	0/0:187:187,0:187:6654:0:0:0,-56.2926,-598.942	0/0:89:89,0:89:3167:0:0:0,-26.7917,-285.255	0/0:114:114,0:114:4042:0:0:0,-34.3174,-363.968	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:76:39,37:39:1389:37:1332:-97.3041,0,-102.429	0/1:64:39,25:39:1396:25:883:-60.5215,0,-106.673	0/1:75:44,31:44:1576:31:1080:-74.9285,0,-119.554	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:59:36,23:36:1279:23:828:-57.0833,0,-97.6517	0/1:65:29,36:29:1032:36:1288:-96.6566,0,-73.6265	0/1:67:30,37:30:1080:37:1319:-98.8412,0,-77.3442	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.904	0/0:157:156,1:156:5547:1:32:0,-44.0624,-496.157	0/0:155:155,0:155:5517:0:0:0,-46.6596,-496.655	0/1:124:45,79:45:1612:79:2832:-217.791,0,-108.042	0/1:95:52,43:52:1852:43:1544:-110.654,0,-138.362	0/0:139:139,0:139:4962:0:0:0,-41.8432,-446.727	0/1:66:39,27:39:1387:27:957:-66.5759,0,-105.26	0/0:422:421,1:421:15027:1:36:0,-123.436,-1348.56	0/1:169:85,84:85:3044:84:2980:-217.559,0,-223.316	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:228:109,119:109:3876:119:4216:-310.987,0,-280.4	0/1:227:123,104:123:4390:104:3720:-266.668,0,-326.939	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:234:105,129:105:3752:129:4572:-341.161,0,-267.44	0/1:259:128,131:128:4519:131:4627:-338.628,0,-328.78	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.759	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:163:84,79:84:3008:79:2787:-202.002,0,-221.883	0/1:21:12,9:12:423:9:324:-23.1842,0,-32.0834	0/1:137:65,72:65:2319:72:2540:-187.596,0,-167.729	0/1:66:33,33:33:1176:33:1152:-84.1154,0,-86.2798	0/0:90:90,0:90:3195:0:0:0,-27.0927,-287.775	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/0:116:116,0:116:4135:0:0:0,-34.9195,-372.335	0/0:205:205,0:205:7278:0:0:0,-61.7111,-655.076	0/1:129:56,73:56:1997:73:2599:-195.324,0,-141.169	0/1:156:64,91:64:2296:91:3217:-242.361,0,-159.882	0/1:164:79,85:79:2817:85:3038:-224.281,0,-204.399	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:110:110,0:110:3894:0:0:0,-33.1133,-350.654	0/1:56:29,27:29:1031:27:943:-68.3255,0,-76.2449	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/1:133:53,80:53:1900:80:2789:-211.182,0,-131.241	0/1:15:7,8:7:239:8:288:-21.752,0,-17.3273	1/1:12:1,11:1:36:11:387:-31.5677,-0.0140851,0	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:97:58,39:58:2064:39:1376:-94.9359,0,-156.831	0/0:133:133,0:133:4748:0:0:0,-40.037,-427.475	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:223:135,88:135:4819:88:3130:-214.797,0,-366.736	0/0:198:197,1:197:7042:1:36:0,-56.0057,-630.242	0/1:57:34,23:34:1212:23:824:-57.3246,0,-92.2276	0/0:89:89,0:89:3179:0:0:0,-26.7917,-286.334	0/1:202:98,104:98:3496:104:3703:-272.663,0,-254.043	0/1:117:39,78:39:1381:78:2739:-211.531,0,-89.3663	0/1:21:11,10:11:396:10:351:-25.605,0,-29.6611	0/1:97:40,57:40:1428:57:2036:-154.312,0,-99.6176	0/1:93:41,52:41:1476:52:1844:-138.244,0,-105.14	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:96:43,53:43:1536:53:1883:-140.849,0,-109.634	0/1:65:32,33:32:1136:33:1163:-85.4092,0,-82.9819	0/0:150:149,1:149:5322:1:36:0,-41.5562,-475.386	0/1:204:76,128:76:2705:128:4540:-347.36,0,-182.283	0/1:80:28,52:28:996:52:1860:-143.597,0,-65.8725	0/0:102:102,0:102:3655:0:0:0,-30.7051,-329.148	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:121:120,0:120:4276:0:0:0,-36.1236,-384.658	0/0:128:128,0:128:4557:0:0:0,-38.5318,-410.297	0/0:184:184,0:184:6549:0:0:0,-55.3895,-589.496	0/1:127:62,65:62:2202:65:2294:-168.49,0,-160.213	0/1:67:33,34:33:1162:34:1212:-89.2173,0,-84.7163	0/0:91:91,0:91:3220:0:0:0,-27.3937,-290.022	0/1:154:89,65:89:3143:65:2294:-160.359,0,-236.737	0/0:46:46,0:46:1616:0:0:0,-13.8474,-145.729	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:68:67,0:67:2370:0:0:0,-20.169,-213.198	0/1:30:10,20:10:360:20:698:-54.109,0,-23.7134	0/1:76:40,36:40:1424:36:1278:-92.4434,0,-105.579	0/1:93:31,62:31:1100:62:2197:-169.998,0,-71.3145	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:128:128,0:128:4571:0:0:0,-38.5318,-411.556
chr07	730761	.	TT	TC	111224	PASS	AB=0.48013;ABP=19.8373;AC=138;AF=0.734043;AN=188;AO=5590;CIGAR=1M1X;DP=8162;DPB=8162;DPRA=0;EPP=12124.2;EPPR=5533.75;GTI=2;LEN=1;MEANALT=1.2234;MQM=59.9998;MQMR=59.9961;NS=94;NUMALT=1;ODDS=1.20618;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196905;QR=87968;RO=2547;RPL=2;RPP=12124.2;RPPR=5533.75;RPR=5588;RUN=1;SAF=0;SAP=12141.5;SAR=5590;SRF=0;SRP=5533.75;SRR=2547;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:53,28:53:1850:28:1000:-65.9319,0,-142.393	0/1:44:14,30:14:434:30:1050:-81.5635,0,-26.1126	0/1:121:64,57:64:2223:57:1994:-143.306,0,-163.906	0/1:141:68,73:68:2319:73:2615:-193.152,0,-166.521	1/1:48:0,48:0:0:48:1695:-152.835,-14.4494,0	1/1:49:0,49:0:0:49:1728:-155.802,-14.7505,0	0/1:92:64,27:64:2223:27:957:-58.7964,0,-172.686	1/1:76:0,76:0:0:76:2696:-242.884,-22.8783,0	1/1:109:0,109:0:0:109:3843:-346.066,-32.8123,0	1/1:45:0,45:0:0:45:1548:-139.605,-13.5464,0	1/1:76:0,75:0:0:75:2620:-235.689,-22.5773,0	0/1:107:54,52:54:1888:52:1824:-132.277,0,-138.035	0/1:86:41,45:41:1420:45:1570:-115.698,0,-102.203	0/1:90:44,46:44:1483:46:1565:-114.042,0,-106.661	1/1:74:0,74:0:0:74:2570:-231.548,-22.2762,0	0/1:63:35,27:35:1204:27:942:-66.0883,0,-89.6558	0/1:50:28,22:28:944:22:784:-55.8324,0,-70.2136	0/1:28:14,14:14:497:14:484:-35.4597,0,-36.6359	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:118:0,117:0:0:117:4187:-376.651,-35.2205,0	1/1:129:0,129:0:0:129:4587:-412.998,-38.8329,0	0/1:122:87,35:87:2981:35:1247:-75.8084,0,-231.797	0/1:108:47,60:47:1608:60:2129:-159.415,0,-112.54	1/1:80:0,80:0:0:80:2826:-254.579,-24.0824,0	0/1:103:60,43:60:2055:43:1512:-105.365,0,-154.209	1/1:212:0,212:0:0:212:7470:-672.349,-63.8184,0	0/1:204:94,110:94:3317:110:3912:-290.865,0,-237.34	1/1:31:0,31:0:0:31:1070:-96.6046,-9.33193,0	0/1:185:54,128:54:1887:128:4510:-351.026,0,-115.061	0/1:136:61,75:61:2122:75:2633:-196.277,0,-150.304	1/1:96:0,95:0:0:95:3356:-301.915,-28.5979,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:41:0,41:0:0:41:1453:-131.064,-12.3422,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:18:0,18:0:0:18:631:-57.1157,-5.41854,0	0/1:27:18,9:18:646:9:311:-20.1959,0,-50.3435	0/1:221:114,106:114:3984:106:3711:-267.717,0,-292.275	0/1:138:57,81:57:2009:81:2870:-216.996,0,-139.54	1/1:60:0,60:0:0:60:2095:-188.818,-18.0618,0	0/1:11:5,6:5:180:6:208:-15.7478,0,-13.2407	0/1:76:45,31:45:1587:31:1103:-76.7015,0,-120.238	0/1:32:16,16:16:570:16:563:-41.3662,0,-42	0/1:155:72,83:72:2473:83:2912:-215.654,0,-176.161	0/1:58:26,32:26:891:32:1070:-79.1397,0,-63.0398	1/1:57:2,55:2:72:55:1885:-163.088,-10.322,0	1/1:120:0,120:0:0:120:4235:-381.331,-36.1236,0	1/1:110:1,109:1:36:109:3829:-341.209,-29.515,0	1/1:157:0,156:0:0:156:5531:-497.668,-46.9607,0	0/1:107:44,63:44:1546:63:2220:-167.853,0,-107.219	0/1:91:54,37:54:1835:37:1295:-89.4566,0,-138.028	0/1:136:78,58:78:2724:58:2034:-142.389,0,-204.461	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:122:0,120:0:0:120:4224:-380.044,-36.1236,0	0/1:40:23,17:23:797:17:612:-43.3722,0,-60.0041	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:128:53,74:53:1853:74:2640:-199.355,0,-128.555	0/1:64:40,24:40:1368:24:864:-58.8166,0,-104.145	0/1:20:9,11:9:313:11:396:-29.9621,0,-22.4845	1/1:26:0,23:0:0:23:813:-73.1624,-6.92369,0	0/1:107:53,53:53:1840:53:1868:-136.13,0,-133.608	1/1:138:1,137:1:25:137:4786:-428.406,-39.0423,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:117:52,65:52:1766:65:2317:-173.568,0,-123.994	1/1:123:0,122:0:0:122:4314:-388.078,-36.7257,0	0/1:84:59,25:59:1996:25:883:-54.5009,0,-154.617	1/1:60:0,60:0:0:60:2109:-190.078,-18.0618,0	0/1:125:63,62:63:2081:62:2182:-159.018,0,-149.921	0/1:144:108,35:108:3724:35:1222:-66.8752,0,-291.956	0/1:44:25,19:25:822:19:668:-47.2003,0,-61.037	0/1:49:29,20:29:1029:20:701:-48.6613,0,-78.1717	0/1:44:27,17:27:926:17:599:-40.9928,0,-70.4037	1/1:32:2,30:2:70:30:1045:-87.7102,-2.98563,0	0/1:177:95,82:95:3265:82:2894:-207.412,0,-240.786	0/1:86:41,45:41:1430:45:1597:-118.13,0,-103.105	1/1:122:0,121:0:0:121:4281:-385.181,-36.4246,0	0/1:129:57,72:57:1986:72:2543:-190.286,0,-140.178	0/1:95:59,36:59:2016:36:1264:-85.4626,0,-153.108	1/1:71:0,71:0:0:71:2520:-227.05,-21.3731,0	1/1:27:0,27:0:0:27:938:-84.7318,-8.12781,0	1/1:77:0,77:0:0:77:2756:-248.281,-23.1793,0	1/1:55:1,54:1:25:54:1893:-168.146,-14.0568,0	1/1:160:0,160:0:0:160:5697:-512.85,-48.1648,0	0/1:68:37,31:37:1306:31:1079:-76.9476,0,-97.3661	0/1:83:41,41:41:1447:41:1436:-104.599,0,-105.588	1/1:44:0,44:0:0:44:1516:-136.726,-13.2453,0	0/1:157:68,89:68:2377:89:3095:-231.519,0,-166.925	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	1/1:102:0,102:0:0:102:3544:-319.171,-30.7051,0	1/1:89:1,88:1:36:88:3093:-275.002,-23.1934,0	0/1:70:30,40:30:1038:40:1411:-106.214,0,-72.6542	0/1:178:102,75:102:3472:75:2597:-180.338,0,-259.051	0/1:85:56,29:56:1927:29:1036:-67.9664,0,-148.116	1/1:81:1,80:1:25:80:2822:-251.721,-21.8836,0	1/1:92:0,91:0:0:91:3211:-288.962,-27.3937,0
chr07	731131	.	T	C	30807.4	PASS	AB=0.519687;ABP=14.6384;AC=51;AF=0.271277;AN=188;AO=1802;CIGAR=1X;DP=6219;DPB=6219;DPRA=1.26576;EPP=3872.69;EPPR=9458.04;GTI=1;LEN=1;MEANALT=1.03636;MQM=59.7919;MQMR=59.9778;NS=94;NUMALT=1;ODDS=4.68256;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64412;QR=157664;RO=4414;RPL=1797;RPP=3872.69;RPPR=9458.04;RPR=5;RUN=1;SAF=1802;SAP=3916;SAR=0;SRF=4414;SRP=9587.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/1:111:66,45:66:2368:45:1603:-111.09,0,-179.964	0/1:73:32,41:32:1152:41:1472:-110.801,0,-82.015	0/1:93:45,48:45:1616:48:1716:-126.725,0,-117.734	0/0:61:60,1:60:2133:1:36:0,-14.7646,-188.638	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	0/1:79:43,36:43:1532:36:1288:-92.4399,0,-114.392	0/0:133:133,0:133:4764:0:0:0,-40.037,-428.903	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.783	0/0:67:67,0:67:2373:0:0:0,-20.169,-213.824	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/1:67:40,27:40:1436:27:968:-67.2684,0,-109.369	0/1:60:28,32:28:1000:32:1143:-85.1006,0,-72.2536	0/1:55:27,28:27:960:28:999:-73.6673,0,-70.1596	0/0:39:39,0:39:1382:0:0:0,-11.7402,-124.677	0/1:33:16,17:16:576:17:612:-45.4702,0,-42.241	0/1:29:12,17:12:417:17:612:-46.6836,0,-29.1303	0/1:36:23,13:23:824:13:459:-30.807,0,-63.6453	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:75:74,1:74:2660:1:36:0,-18.979,-236.047	0/0:101:101,0:101:3627:0:0:0,-30.404,-326.633	0/1:76:20,56:20:716:56:1996:-157.034,0,-41.8894	0/1:35:9,26:9:309:26:928:-73.3022,0,-17.6047	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:23:6,17:6:212:17:612:-48.4851,0,-12.5011	0/0:236:234,2:234:8304:2:72:0,-64.2064,-740.494	0/1:161:79,81:79:2813:81:2912:-213.786,0,-204.884	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:139:78,61:78:2800:61:2165:-153.27,0,-210.396	0/1:74:32,42:32:1148:42:1504:-113.372,0,-81.3536	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:26:8,18:8:288:18:640:-50.0943,0,-18.4406	0/1:162:85,77:85:3029:77:2764:-200.233,0,-224.073	0/1:183:80,103:80:2853:103:3676:-275.827,0,-201.918	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:94:49,45:49:1760:45:1602:-116.153,0,-130.387	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/1:88:43,45:43:1548:45:1596:-117.438,0,-113.122	0/1:48:26,22:26:936:22:784:-56.4321,0,-70.11	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:85:85,0:85:3033:0:0:0,-25.5875,-273.199	0/0:93:93,0:93:3314:0:0:0,-27.9958,-298.476	0/0:142:141,0:141:5022:0:0:0,-42.4452,-451.913	0/1:81:37,44:37:1323:44:1576:-117.746,0,-94.9879	0/1:119:56,63:56:2004:63:2260:-167.84,0,-144.811	0/1:113:51,62:51:1813:62:2205:-164.697,0,-129.433	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:94:93,1:93:3317:1:36:0,-24.6985,-295.141	0/1:28:9,19:9:324:19:680:-53.0985,0,-21.077	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.4855	0/1:77:42,35:42:1504:35:1237:-88.4484,0,-112.475	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:80:40,40:40:1440:40:1436:-105.422,0,-105.815	0/0:86:86,0:86:3062:0:0:0,-25.8886,-275.809	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:115:49,66:49:1756:66:2351:-177.228,0,-123.706	0/0:148:148,0:148:5293:0:0:0,-44.5524,-476.504	0/1:73:34,39:34:1220:39:1404:-104.684,0,-88.1316	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.484	0/1:104:50,54:50:1800:54:1932:-142.819,0,-130.975	0/1:109:40,69:40:1425:69:2480:-190.638,0,-95.7332	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:42:21,20:21:747:20:716:-52.0658,0,-54.8524	0/1:60:29,31:29:1040:31:1116:-82.689,0,-75.8526	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:49:22,27:22:788:27:968:-72.6784,0,-56.4939	0/1:46:20,26:20:716:26:932:-70.3433,0,-50.9203	0/0:152:152,0:152:5452:0:0:0,-45.7566,-490.803	0/1:100:46,54:46:1656:54:1944:-145.131,0,-119.215	0/1:77:49,28:49:1737:28:993:-66.5032,0,-133.433	0/0:65:64,1:64:2285:1:36:0,-15.9687,-202.312	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:174:174,0:174:6164:0:0:0,-52.3792,-554.855	0/1:96:61,35:61:2158:35:1245:-83.4515,0,-165.585	0/1:25:7,18:7:252:18:627:-49.2277,0,-15.5032	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:77:39,38:39:1404:38:1364:-99.8423,0,-103.48	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:37:16,21:16:557:21:756:-57.2291,0,-39.3165	0/1:85:43,42:43:1525:42:1494:-109.146,0,-111.954	0/1:32:13,19:13:464:19:665:-50.5398,0,-32.4645	0/0:20:20,0:20:689:0:0:0,-6.0206,-62.3285	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614
chr07	816757	.	A	C	38282.1	PASS	AB=0.51479;ABP=11.2964;AC=50;AF=0.268817;AN=186;AO=2256;CIGAR=1X;DP=7598;DPB=7598;DPRA=1.21924;EPP=4893.17;EPPR=11581.3;GTI=2;LEN=1;MEANALT=1.01887;MQM=59.9836;MQMR=60;NS=93;NUMALT=1;ODDS=0.873288;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80572;QR=191379;RO=5336;RPL=2256;RPP=4901.85;RPPR=11581.3;RPR=0;RUN=1;SAF=1;SAP=4893.17;SAR=2255;SRF=0;SRP=11590;SRR=5336;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:5,13:5:180:13:468:-37.0411,0,-11.1335	0/1:89:30,59:30:1080:59:2097:-162.206,0,-70.7216	0/1:140:70,70:70:2512:70:2512:-184.188,0,-184.188	0/1:224:94,130:94:3364:130:4634:-349.79,0,-235.546	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:101:62,39:62:2224:39:1396:-95.5351,0,-170.02	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/1:71:36,35:36:1296:35:1256:-91.9722,0,-95.5708	0/1:67:34,33:34:1224:33:1181:-86.4287,0,-90.298	0/1:47:21,26:21:756:26:936:-70.4111,0,-54.2188	0/0:53:52,0:52:1868:0:0:0,-15.6536,-168.039	0/1:46:25,21:25:900:21:756:-54.5198,0,-67.4736	0/1:57:29,28:29:1044:28:1000:-73.1567,0,-77.1161	0/1:54:29,25:29:1040:25:887:-63.8925,0,-77.6587	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:134:133,0:133:4768:0:0:0,-40.037,-428.956	0/0:166:166,0:166:5960:0:0:0,-49.971,-536.505	0/1:86:29,57:29:1036:57:2040:-157.983,0,-67.6653	0/1:53:28,25:28:1000:25:900:-65.3664,0,-74.3608	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/1:67:32,35:32:1148:35:1237:-91.4633,0,-83.4608	0/0:257:257,0:257:9201:0:0:0,-77.3647,-828.059	0/1:173:99,74:99:3536:74:2649:-186.578,0,-266.372	0/0:35:34,1:34:1224:1:36:0,-6.93777,-106.869	0/1:221:106,115:106:3808:115:4083:-301.07,0,-276.389	0/1:107:39,68:39:1391:68:2440:-187.645,0,-93.278	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:194:94,100:94:3376:100:3590:-264.906,0,-245.655	0/1:156:68,87:68:2444:87:3109:-233.016,0,-173.195	0/0:74:73,1:73:2615:1:36:0,-18.6779,-231.999	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:122:59,63:59:2112:63:2249:-165.946,0,-153.623	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/1:101:64,37:64:2292:37:1328:-89.4182,0,-176.137	0/1:63:27,36:27:968:36:1292:-97.6189,0,-68.4725	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.269	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:145:144,0:144:5164:0:0:0,-43.3483,-464.54	0/1:110:41,69:41:1472:69:2449:-187.551,0,-99.6628	0/1:82:40,42:40:1440:42:1512:-111.69,0,-105.213	0/1:168:79,89:79:2836:89:3196:-237.29,0,-204.905	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:150:149,1:149:5352:1:36:0,-41.5562,-478.212	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:109:57,52:57:2025:52:1845:-133.516,0,-149.709	0/1:49:24,25:24:860:25:888:-65.4886,0,-62.9714	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:57:29,28:29:1044:28:978:-71.1699,0,-77.1161	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:194:96,98:96:3452:98:3508:-257.53,0,-252.491	0/0:148:148,0:148:5304:0:0:0,-44.5524,-477.494	0/1:74:24,50:24:860:50:1781:-138.295,0,-55.4456	0/0:67:65,2:65:2336:2:72:0,-13.3323,-203.663	0/1:157:83,74:83:2938:74:2614:-188.088,0,-217.391	0/1:79:31,48:31:1104:48:1708:-130.224,0,-75.8893	0/1:26:12,14:12:432:14:500:-37.5094,0,-31.3944	0/1:77:45,32:45:1605:32:1144:-80.0902,0,-121.559	0/1:63:29,34:29:1044:34:1195:-88.8882,0,-75.3099	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:84:49,35:49:1760:35:1252:-87.6986,0,-133.397	0/1:57:37,20:37:1328:20:707:-46.7959,0,-102.664	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/1:154:82,72:82:2944:72:2588:-186.81,0,-218.835	0/1:47:18,29:18:648:29:1036:-79.4055,0,-44.5035	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:84:37,47:37:1324:47:1672:-125.481,0,-94.1756	0/1:60:35,25:35:1256:25:896:-62.8986,0,-95.2835	0/0:102:102,0:102:3655:0:0:0,-30.7051,-329.153	0/1:139:79,60:79:2840:60:2148:-151.744,0,-213.994	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/1:34:22,12:22:792:12:432:-28.9862,0,-61.3707	0/1:94:46,48:46:1643:48:1719:-126.699,0,-119.861	0/1:63:20,43:20:712:43:1544:-120.288,0,-45.4418	0/0:87:86,0:86:3080:0:0:0,-25.8886,-277.216	0/0:83:82,0:82:2952:0:0:0,-24.6845,-265.553
chr07	943504	.	C	A	141872	PASS	AB=0.52919;ABP=42.3095;AC=139;AF=0.739362;AN=188;AO=6819;CIGAR=1X;DP=9329;DPB=9329;DPRA=0;EPP=14706.2;EPPR=5410.03;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9661;MQMR=60;NS=94;NUMALT=1;ODDS=3.39622;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243825;QR=89024;RO=2506;RPL=12;RPP=14706.2;RPPR=5410.03;RPR=6807;RUN=1;SAF=6819;SAP=14810.3;SAR=0;SRF=2506;SRP=5444.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:25,32:25:887:32:1152:-86.8314,0,-62.9894	0/1:86:41,45:41:1433:45:1616:-119.841,0,-103.375	0/1:187:75,112:75:2667:112:4001:-303.984,0,-183.983	0/1:190:83,107:83:2952:107:3803:-285.271,0,-208.719	1/1:57:0,57:0:0:57:2028:-182.79,-17.1587,0	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	0/1:90:37,53:37:1324:53:1908:-144.905,0,-92.3694	1/1:171:0,171:0:0:171:6108:-549.806,-51.4761,0	1/1:81:1,80:1:36:80:2830:-251.339,-20.7852,0	1/1:75:1,74:1:36:74:2637:-233.977,-18.979,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	0/1:95:48,46:48:1708:46:1648:-119.952,0,-125.349	0/1:119:69,49:69:2442:49:1756:-122.442,0,-184.154	0/1:95:39,56:39:1388:56:2016:-153.115,0,-96.6211	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	0/1:69:37,32:37:1312:32:1152:-83.2191,0,-97.6106	0/1:34:20,14:20:716:14:500:-35.1012,0,-54.5327	0/1:53:30,23:30:1072:23:828:-58.8895,0,-80.8379	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:120:0,120:0:0:120:4277:-385.106,-36.1236,0	1/1:196:0,196:0:0:196:7015:-631.407,-59.0019,0	0/1:154:95,59:95:3379:59:2112:-143.987,0,-257.968	0/1:97:49,48:49:1735:48:1720:-125.886,0,-127.234	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:81:39,42:39:1392:42:1489:-109.92,0,-101.196	1/1:220:1,219:1:36:219:7837:-701.753,-62.6283,0	1/1:278:1,277:1:36:277:9852:-882.978,-80.0881,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:272:108,164:108:3848:164:5864:-445.989,0,-264.638	0/1:157:84,73:84:2970:73:2608:-187.706,0,-220.272	1/1:98:0,98:0:0:98:3496:-314.847,-29.5009,0	1/1:30:0,30:0:0:30:1065:-96.1606,-9.0309,0	1/1:74:0,74:0:0:74:2614:-235.505,-22.2762,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:49:22,27:22:788:27:957:-71.6934,0,-56.4943	0/1:187:83,104:83:2947:104:3726:-279.247,0,-209.172	0/1:141:71,70:71:2534:70:2512:-183.887,0,-185.865	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:90:37,53:37:1324:53:1888:-143.106,0,-92.3694	0/1:36:17,19:17:612:19:684:-51.0532,0,-44.5764	0/1:224:82,142:82:2932:142:5063:-388.382,0,-196.684	0/1:50:19,31:19:667:31:1108:-84.9789,0,-45.3031	1/1:46:0,46:0:0:46:1636:-147.523,-13.8474,0	1/1:114:0,114:0:0:114:4090:-368.227,-34.3174,0	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0	1/1:220:0,220:0:0:220:7861:-707.517,-66.2266,0	0/1:107:55,52:55:1968:52:1844:-134.028,0,-145.185	0/1:159:72,87:72:2560:87:3124:-233.522,0,-182.787	0/1:134:41,93:41:1423:93:3336:-260.118,0,-88.0239	1/1:15:0,15:0:0:15:521:-47.2163,-4.51545,0	1/1:127:1,126:1:36:126:4528:-404.087,-34.6325,0	0/1:74:49,25:49:1722:25:900:-59.0448,0,-132.987	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	0/1:172:78,94:78:2788:94:3356:-250.478,0,-199.384	0/1:37:12,25:12:423:25:881:-68.4678,0,-27.267	0/1:22:10,12:10:356:12:432:-32.5985,0,-25.7586	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:96:1,95:1:32:95:3397:-302.707,-25.6996,0	1/1:93:1,92:1:36:92:3312:-294.699,-24.3975,0	1/1:21:0,21:0:0:21:745:-67.3734,-6.32163,0	0/1:174:80,94:80:2846:94:3355:-249.787,0,-203.999	1/1:154:0,154:0:0:154:5494:-494.587,-46.3586,0	0/1:88:38,50:38:1359:50:1800:-135.792,0,-96.1192	1/1:78:0,78:0:0:78:2793:-251.608,-23.4803,0	0/1:89:38,51:38:1364:51:1836:-138.729,0,-96.269	0/1:202:141,61:141:5005:61:2177:-135.365,0,-389.792	0/1:63:37,26:37:1303:26:932:-65.234,0,-98.6057	0/1:68:32,36:32:1132:36:1296:-96.4739,0,-81.7185	0/1:50:26,24:26:928:24:860:-62.6703,0,-68.7868	1/1:36:0,36:0:0:36:1287:-116.133,-10.8371,0	0/1:185:73,112:73:2608:112:4002:-304.673,0,-179.278	0/1:101:39,62:39:1369:62:2232:-170.74,0,-93.1022	1/1:124:0,124:0:0:124:4422:-398.15,-37.3277,0	0/1:199:78,121:78:2766:121:4340:-330.869,0,-189.277	0/1:162:81,81:81:2887:81:2893:-211.838,0,-211.3	1/1:125:0,125:0:0:125:4449:-400.56,-37.6288,0	1/1:34:0,34:0:0:34:1210:-109.204,-10.235,0	1/1:96:0,96:0:0:96:3399:-306.122,-28.8989,0	1/1:131:0,131:0:0:131:4673:-420.731,-39.4349,0	1/1:168:0,168:0:0:168:5997:-539.836,-50.573,0	0/1:44:23,21:23:802:21:756:-55.1219,0,-59.2521	0/1:86:44,42:44:1554:42:1512:-110.486,0,-114.262	1/1:54:1,53:1:36:53:1900:-167.676,-12.6573,0	0/1:126:63,63:63:2221:63:2264:-166.093,0,-162.224	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:65:1,64:1:36:64:2293:-203.033,-15.9687,0	1/1:66:0,65:0:0:65:2340:-210.499,-19.567,0	0/1:93:42,50:42:1500:50:1796:-133.868,0,-107.24	0/1:165:78,87:78:2760:87:3124:-231.716,0,-198.971	0/1:63:40,23:40:1423:23:824:-55.5184,0,-109.402	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:111:0,111:0:0:111:3992:-359.468,-33.4143,0
chr07	943581	.	C	T	32177.5	PASS	AB=0.49987;ABP=3.01086;AC=49;AF=0.263441;AN=186;AO=1936;CIGAR=1X;DP=6938;DPB=6938;DPRA=1.3339;EPP=4206.98;EPPR=10858.2;GTI=1;LEN=1;MEANALT=1.01852;MQM=54.2185;MQMR=59.5783;NS=93;NUMALT=1;ODDS=1.25818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69137;QR=176658;RO=4999;RPL=0;RPP=4206.98;RPPR=10858.2;RPR=1936;RUN=1;SAF=0;SAP=4206.98;SAR=1936;SRF=0;SRP=10858.2;SRR=4999;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:94:60,34:60:2112:34:1211:-80.6633,0,-162.011	0/1:49:21,28:21:744:28:992:-74.4524,0,-52.5339	0/1:41:17,24:17:604:24:856:-64.8268,0,-42.3484	0/1:123:59,64:59:2108:64:2285:-168.494,0,-152.955	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7126	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.095	0/1:98:54,44:54:1921:44:1570:-111.664,0,-143.652	0/0:123:123,0:123:4365:0:0:0,-37.0267,-392.678	0/0:94:94,0:94:3278:0:0:0,-28.2968,-295.188	0/0:106:106,0:106:3714:0:0:0,-31.9092,-334.442	0/0:46:46,0:46:1595:0:0:0,-13.8474,-143.783	0/1:69:34,35:34:1155:35:1235:-90.1693,0,-83.4636	0/1:76:39,37:39:1360:37:1306:-93.9377,0,-99.7869	0/1:96:54,42:54:1881:42:1488:-104.91,0,-140.63	0/0:81:81,0:81:2839:0:0:0,-24.3834,-255.74	0/1:59:35,24:35:1244:24:860:-59.846,0,-94.4911	0/1:95:49,46:49:1719:46:1632:-117.896,0,-126.385	0/1:75:40,34:40:1392:34:1220:-87.057,0,-103.018	0/0:30:30,0:30:1054:0:0:0,-9.0309,-95.0032	0/0:68:67,1:67:2376:1:32:0,-17.2718,-210.884	0/0:146:146,0:146:5139:0:0:0,-43.9504,-462.585	0/1:109:34,75:34:1216:75:2688:-209.119,0,-76.9334	0/1:115:55,60:55:1946:60:2152:-158.967,0,-140.708	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.368	0/1:69:33,36:33:1161:36:1276:-93.8851,0,-84.0191	0/0:166:166,0:166:5919:0:0:0,-49.971,-532.809	0/0:112:111,1:111:3932:1:36:0,-30.2609,-350.601	0/0:43:42,0:42:1500:0:0:0,-12.6433,-134.765	0/1:113:59,54:59:2099:54:1916:-137.825,0,-155.142	0/1:73:50,23:50:1788:23:828:-52.7628,0,-139.208	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.863	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.822	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	.:.:.:.:.:.:.:.	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:247:117,130:117:4142:130:4639:-342.818,0,-298.611	0/1:156:71,85:71:2522:85:3032:-225.61,0,-180.119	0/0:38:38,0:38:1346:0:0:0,-11.4391,-121.427	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:67:40,27:40:1424:27:967:-66.4605,0,-108.27	0/1:45:25,20:25:887:20:720:-51.3646,0,-66.6018	0/1:57:33,24:33:1175:24:839:-57.4675,0,-88.889	0/1:79:33,46:33:1172:46:1640:-123.601,0,-82.0038	0/0:72:72,0:72:2504:0:0:0,-21.6742,-225.606	0/0:111:110,0:110:3872:0:0:0,-33.1133,-348.294	0/0:70:70,0:70:2442:0:0:0,-21.0721,-219.976	0/0:141:141,0:141:5016:0:0:0,-42.4452,-451.135	0/1:90:54,36:54:1881:36:1292:-89.4081,0,-142.067	0/1:71:44,27:44:1551:27:964:-65.5578,0,-118.375	0/1:140:72,68:72:2520:68:2436:-177.058,0,-184.845	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0748	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/1:34:19,15:19:667:15:540:-38.1914,0,-50.1196	0/1:18:9,9:9:320:9:324:-24.0131,0,-23.7238	0/1:63:44,19:44:1550:19:684:-42.8341,0,-120.813	0/1:61:31,30:31:1112:30:1080:-78.6252,0,-82.0168	0/1:6:2,4:2:68:4:144:-11.5037,0,-4.65153	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4816	0/0:93:93,0:93:3280:0:0:0,-27.9958,-295.401	0/0:129:128,1:128:4442:1:36:0,-35.2372,-396.349	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1376	0/1:104:48,56:48:1696:56:2012:-149.661,0,-121.615	0/0:113:111,2:111:3948:2:72:0,-27.1846,-348.561	0/1:32:19,13:19:662:13:460:-32.0189,0,-50.2689	0/0:39:39,0:39:1366:0:0:0,-11.7402,-123.232	0/1:83:40,43:40:1423:43:1544:-113.884,0,-103.363	0/1:50:17,33:17:612:33:1176:-90.7171,0,-40.3619	0/1:24:8,16:8:284:16:576:-44.747,0,-18.674	0/1:79:30,49:30:1072:49:1760:-134.101,0,-73.0029	0/1:87:44,43:44:1542:43:1540:-112.599,0,-112.88	0/0:26:26,0:26:905:0:0:0,-7.82678,-81.7619	0/1:66:27,39:27:939:39:1401:-106.087,0,-64.8906	0/1:51:20,31:20:703:31:1104:-83.4392,0,-48.2318	0/0:117:117,0:117:4142:0:0:0,-35.2205,-372.931	0/1:82:36,46:36:1287:46:1639:-122.916,0,-91.446	0/1:125:76,49:76:2709:49:1747:-118.861,0,-206.393	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.81	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3075	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.051	0/0:58:58,0:58:2035:0:0:0,-17.4597,-183.353	0/0:118:118,0:118:4223:0:0:0,-35.5215,-380.206	0/1:112:52,60:52:1822:60:2156:-160.199,0,-130.492	0/1:82:54,28:54:1923:28:1008:-66.2022,0,-148.644	0/0:119:119,0:119:4208:0:0:0,-35.8226,-378.884	0/1:180:85,95:85:3022:95:3390:-250.772,0,-217.786	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.562	0/0:102:101,1:101:3573:1:36:0,-27.1158,-318.167	0/0:83:83,0:83:2918:0:0:0,-24.9855,-262.726	0/1:62:31,31:31:1084:31:1094:-79.8401,0,-79.1803	0/1:78:30,48:30:1063:48:1711:-130.435,0,-72.4913	0/1:70:23,47:23:824:47:1683:-130.223,0,-53.4112	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2429	0/0:120:119,1:119:4216:1:36:0,-32.5279,-376.015
chr07	1047643	.	A	G	28406	PASS	AB=0.666527;ABP=577.245;AC=54;AF=0.290323;AN=186;AO=1609;CIGAR=1X;DP=3714;DPB=3714;DPRA=1.52806;EPP=3496.91;EPPR=4573.96;GTI=13;LEN=1;MEANALT=1;MQM=59.1529;MQMR=59.9762;NS=93;NUMALT=1;ODDS=0.0791526;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56988;QR=74102;RO=2105;RPL=0;RPP=3496.91;RPPR=4573.96;RPR=1609;RUN=1;SAF=0;SAP=3496.91;SAR=1609;SRF=0;SRP=4573.96;SRR=2105;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:2,19:2:72:19:666:-53.4045,0,-0.515092	0/1:39:14,25:14:500:25:892:-68.8311,0,-33.596	0/1:64:9,55:9:320:55:1968:-157.288,0,-9.87644	0/1:192:79,113:79:2788:113:4015:-302.634,0,-193.363	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:46:19,27:19:646:27:941:-71.0564,0,-44.6104	0/0:40:40,0:40:1382:0:0:0,-12.0412,-124.673	0/0:27:27,0:27:934:0:0:0,-8.12781,-84.3712	0/1:52:26,26:26:906:26:921:-67.5516,0,-66.1892	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:42:11,31:11:372:31:1084:-85.2177,0,-21.1633	0/1:34:10,24:10:356:24:860:-67.4868,0,-22.1462	0/1:18:5,13:5:176:13:460:-36.3168,0,-10.7665	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:25:6,19:6:212:19:657:-51.9162,0,-11.899	0/1:13:2,11:2:72:11:379:-30.5212,0,-2.92333	0/1:11:5,6:5:180:6:212:-16.1062,0,-13.2407	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:82:82,0:82:2881:0:0:0,-24.6845,-259.525	0/1:37:5,32:5:180:32:1140:-91.6732,0,-5.41395	0/1:61:10,51:10:356:51:1809:-144.64,0,-14.0184	0/1:25:4,21:4:135:21:752:-60.4629,0,-4.95676	0/1:22:4,18:4:135:18:648:-52.0292,0,-5.85985	0/0:161:161,0:161:5726:0:0:0,-48.4658,-515.458	0/0:90:90,0:90:3165:0:0:0,-27.0927,-285.077	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:134:34,100:34:1195:100:3536:-277.225,0,-67.5165	0/1:95:46,49:46:1618:49:1755:-129.075,0,-117.31	0/0:37:37,0:37:1299:0:0:0,-11.1381,-117.21	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:71:30,41:30:1060:41:1464:-110.683,0,-74.3381	0/1:34:7,27:7:252:27:950:-75.5608,0,-12.7939	0/1:11:6,5:6:212:5:171:-12.4141,0,-16.1135	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:87:41,46:41:1409:46:1644:-121.831,0,-100.885	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/1:66:19,47:19:676:47:1680:-131.593,0,-41.3	0/1:27:9,18:9:320:18:624:-48.2238,0,-21.0145	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:42:42,0:42:1485:0:0:0,-12.6433,-133.943	0/1:50:23,27:23:807:27:936:-69.2928,0,-57.8977	0/1:46:15,31:15:527:31:1103:-85.7068,0,-33.9128	0/1:65:25,40:25:892:40:1415:-108.024,0,-61.0327	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/1:55:14,41:14:492:41:1463:-115.374,0,-28.0557	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:89:39,50:39:1360:50:1742:-129.811,0,-95.9039	0/1:18:5,13:5:152:13:468:-37.0197,0,-8.5614	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:11:11,0:11:370:0:0:0,-3.31133,-33.6237	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/0:29:28,1:28:990:1:36:0,-5.13159,-85.8144	0/0:13:13,0:13:441:0:0:0,-3.91339,-40.0132	0/1:186:79,107:79:2774:107:3772:-283.651,0,-193.909	0/0:26:25,1:25:892:1:36:0,-4.2285,-77.0014	1/1:14:1,13:1:36:13:449:-36.9103,-0.616145,0	0/0:30:30,0:30:1009:0:0:0,-9.0309,-91.1087	0/1:86:17,69:17:608:69:2450:-194.695,0,-29.1634	0/1:89:20,69:20:711:69:2446:-193.575,0,-37.524	0/1:9:2,7:2:72:7:236:-18.8525,0,-4.12745	0/0:31:31,0:31:1088:0:0:0,-9.33193,-98.2292	0/1:29:8,21:8:288:21:752:-59.255,0,-17.5375	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/1:38:23,15:23:802:15:524:-35.6202,0,-61.0583	0/1:53:15,38:15:524:38:1341:-104.246,0,-31.535	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:119:53,66:53:1857:66:2347:-175.504,0,-131.585	0/1:41:7,34:7:248:34:1203:-96.1308,0,-10.322	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.462	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8767	0/0:50:50,0:50:1759:0:0:0,-15.0515,-158.593	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.198	0/0:65:64,1:64:2254:1:36:0,-15.9687,-199.525	0/1:42:10,32:10:356:32:1136:-89.8995,0,-19.738	0/1:22:7,15:7:248:15:521:-40.5937,0,-16.0415	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/1:41:10,31:10:352:31:1116:-88.3988,0,-19.676	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:25:25,0:25:871:0:0:0,-7.52575,-78.7055	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:27:10,17:10:360:17:608:-46.9184,0,-24.6165	0/1:32:3,29:3:108:29:1016:-82.1022,0,-0.44221	0/0:114:114,0:114:4024:0:0:0,-34.3174,-362.352	0/0:39:39,0:39:1361:0:0:0,-11.7402,-122.786
chr07	1047657	.	CTTT	TTTT,ATTC	80550	PASS	AB=0.342449,0.656327;ABP=531.24,523.061;AC=133,53;AF=0.715054,0.284946;AN=186;AO=2193,1634;CIGAR=1X3M,1X2M1X;DP=3832;DPB=3832;DPRA=20.8152,1.46996;EPP=4627.09,3430.64;EPPR=0;GTI=10;LEN=1,4;MEANALT=1.61957,2.03774;MQM=59.9622,59.1004;MQMR=0;NS=93;NUMALT=2;ODDS=6707.67;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=78134,57614;QR=0;RO=0;RPL=2177,1620;RPP=4627.09,3430.64;RPPR=0;RPR=16,14;RUN=1,1;SAF=0,0;SAP=4765.05,3551.2;SAR=2193,1634;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	2/2:24:0,2,22:0:0:2,22:72,762:-67.8312,-61.955,-61.3529,-6.62266,-0.387998,0	1/2:40:0,15,25:0:0:15,25:540,893:-117.198,-73.1355,-68.6201,-44.4211,0,-36.8953	1/2:64:0,9,55:0:0:9,55:324,1938:-183.62,-157.181,-154.472,-26.7966,0,-10.2399	1/2:196:0,81,115:0:0:81,115:2898,4065:-566.805,-330.488,-306.105,-236.672,0,-202.054	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:8:0,8,0:0:0:8,0:273,0:-24.9002,-2.40824,0,-24.9002,-2.40824,-24.9002	1/2:48:0,21,27:0:0:21,27:752,933:-137.319,-75.987,-69.6653,-61.6846,0,-53.5568	1/1:42:0,42,0:0:0:42,0:1474,0:-132.95,-12.6433,0,-132.95,-12.6433,-132.95	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/2:53:0,27,26:0:0:27,26:972,917:-154.305,-75.0191,-66.8913,-79.6418,0,-71.815	1/1:9:0,8,0:0:0:8,0:273,0:-24.5424,-2.40824,0,-24.5424,-2.40824,-24.5424	1/2:43:0,11,32:0:0:11,32:388,1130:-122.421,-90.8264,-87.5151,-31.946,0,-22.3131	1/2:34:0,9,25:0:0:9,25:324,889:-99.2412,-72.8033,-70.094,-26.7966,0,-19.2708	1/2:18:0,5,13:0:0:5,13:180,460:-52.5107,-37.8219,-36.3168,-15.0469,0,-11.1335	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/2:24:0,6,18:0:0:6,18:212,638:-69.5782,-52.313,-50.5068,-17.6186,0,-12.2001	1/2:13:0,2,11:0:0:2,11:72,381:-37.1778,-31.3009,-30.6988,-6.23466,0,-2.92333	1/2:11:0,5,6:0:0:5,6:180,210:-32.1226,-17.4309,-15.9258,-15.0469,0,-13.2407	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:28:0,28,0:0:0:28,0:989,0:-89.322,-8.42884,0,-89.322,-8.42884,-89.322	1/1:85:0,85,0:0:0:85,0:3033,0:-273.199,-25.5876,0,-273.199,-25.5876,-273.199	1/2:37:0,5,32:0:0:5,32:180,1139:-107.705,-93.0176,-91.5124,-15.0469,0,-5.41395	1/2:62:0,11,51:0:0:11,51:396,1809:-179.979,-147.666,-144.355,-32.6714,0,-17.3189	1/2:25:0,4,21:0:0:4,21:144,746:-72.8796,-61.1291,-59.925,-12.1095,0,-5.78787	1/2:23:0,4,19:0:0:4,19:144,663:-66.0249,-54.2733,-53.0692,-12.1095,0,-6.38993	1/1:168:0,168,0:0:0:168,0:5971,0:-537.496,-50.573,0,-537.496,-50.573,-537.496	1/1:92:0,92,0:0:0:92,0:3269,0:-294.43,-27.6948,0,-294.43,-27.6948,-294.43	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:137:0,38,99:0:0:38,99:1329,3496:-392.162,-284.044,-272.605,-108.469,0,-78.6666	1/2:97:0,47,50:0:0:47,50:1658,1760:-278.141,-143.138,-128.99,-135.355,0,-120.304	1/1:37:0,37,0:0:0:37,0:1310,0:-118.199,-11.1381,0,-118.199,-11.1381,-118.199	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	.:.:.:.:.:.:.:.	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:3:0,1,2:0:0:1,2:36,71:-9.07908,-6.14,-5.83897,-3.29724,0,-2.69518	1/2:73:0,30,43:0:0:30,43:1076,1544:-214.072,-126.309,-117.278,-88.122,0,-75.1777	1/2:34:0,7,27:0:0:7,27:252,958:-98.9539,-78.3909,-76.2837,-20.9217,0,-12.7939	1/2:11:0,6,5:0:0:6,5:201,180:-31.3093,-15.0469,-13.2407,-16.6109,0,-15.1057	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:89:0,42,47:0:0:42,47:1497,1644:-255.99,-133.993,-121.349,-122.351,0,-108.202	1/2:10:0,4,6:0:0:4,6:144,213:-29.462,-17.7103,-16.5062,-12.1095,0,-10.3033	1/2:67:0,19,48:0:0:19,48:680,1690:-193.38,-137.926,-132.207,-55.8096,0,-41.3602	1/2:27:0,9,18:0:0:9,18:324,623:-77.0436,-50.6015,-47.8922,-26.7966,0,-21.378	1/1:10:0,10,0:0:0:10,0:352,0:-32.0182,-3.0103,0,-32.0182,-3.0103,-32.0182	1/1:23:0,23,0:0:0:23,0:805,0:-72.7675,-6.92369,0,-72.7675,-6.92369,-72.7675	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:46:0,46,0:0:0:46,0:1636,0:-147.517,-13.8474,0,-147.517,-13.8474,-147.517	1/2:54:0,24,29:0:0:24,29:856,1005:-151.358,-81.573,-74.3482,-69.8438,0,-61.1139	1/2:50:0,17,32:0:0:17,32:600,1121:-140.047,-91.1877,-86.0702,-48.8517,0,-39.2187	1/2:66:0,26,40:0:0:26,40:932,1420:-192.016,-116.001,-108.174,-76.3721,0,-64.3309	1/1:15:0,15,0:0:0:15,0:529,0:-47.9406,-4.51545,0,-47.9406,-4.51545,-47.9406	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/2:55:0,14,41:0:0:14,41:500,1458:-159.907,-119.142,-114.927,-41.1218,0,-28.7795	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:96:0,43,53:0:0:43,53:1540,1868:-277.427,-151.833,-138.888,-125.949,0,-109.994	1/2:20:0,6,14:0:0:6,14:216,482:-56.6806,-39.0504,-37.2442,-17.9843,0,-13.7699	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:12:0,12,0:0:0:12,0:417,0:-37.8602,-3.61236,0,-37.8602,-3.61236,-37.8602	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/1:29:0,28,1:0:0:28,1:1008,36:-90.6765,-8.42884,0,-87.7391,-5.1316,-87.4381	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/2:199:0,89,110:0:0:89,110:3169,3871:-573.729,-315.446,-288.654,-258.638,0,-225.525	1/1:27:0,26,1:0:0:26,1:936,36:-84.1996,-7.82678,0,-81.2622,-4.52954,-80.9612	1/2:15:0,2,13:0:0:2,13:72,452:-42.7812,-36.9045,-36.3024,-6.23466,0,-2.32127	1/1:35:0,35,0:0:0:35,0:1241,0:-111.993,-10.5361,0,-111.993,-10.5361,-111.993	1/2:88:0,19,68:0:0:19,68:684,2384:-249.744,-193.931,-188.211,-55.8488,0,-35.3788	1/2:91:0,20,71:0:0:20,71:720,2504:-262.96,-204.21,-198.189,-59.1082,0,-37.735	1/2:9:0,2,7:0:0:2,7:72,241:-25.7847,-19.9063,-19.3043,-6.23466,0,-4.12745	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/2:30:0,9,21:0:0:9,21:324,754:-88.281,-61.8439,-59.1347,-26.7966,0,-20.475	1/1:19:0,19,0:0:0:19,0:668,0:-60.4434,-5.71957,0,-60.4434,-5.71957,-60.4434	1/2:41:0,26,15:0:0:26,15:917,533:-118.081,-43.4159,-35.5891,-75.0178,0,-70.5024	1/2:53:0,15,38:0:0:15,38:540,1334:-152.598,-108.533,-104.018,-44.4211,0,-32.9819	1/1:27:0,27,0:0:0:27,0:960,0:-86.7163,-8.12781,0,-86.7163,-8.12781,-86.7163	1/2:125:0,57,68:0:0:57,68:2033,2367:-358.406,-192.677,-175.518,-166.082,0,-145.612	1/2:43:0,7,36:0:0:7,36:244,1286:-124.934,-105.092,-102.984,-20.1922,0,-9.35514	1/1:66:0,66,0:0:0:66,0:2368,0:-213.377,-19.868,0,-213.377,-19.868,-213.377	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/1:50:0,50,0:0:0:50,0:1784,0:-160.842,-15.0515,0,-160.842,-15.0515,-160.842	1/1:18:0,18,0:0:0:18,0:640,0:-57.7974,-5.41854,0,-57.7974,-5.41854,-57.7974	1/1:67:0,67,0:0:0:67,0:2377,0:-214.187,-20.169,0,-214.187,-20.169,-214.187	1/2:43:0,11,32:0:0:11,32:396,1124:-124.136,-91.8221,-88.5108,-32.6714,0,-23.0385	1/2:22:0,7,15:0:0:7,15:244,529:-63.2688,-43.4263,-41.3191,-20.1922,0,-15.6768	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:41:0,10,31:0:0:10,31:360,1103:-119.613,-90.2382,-87.2279,-29.734,0,-20.4021	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/2:6:0,2,4:0:0:2,4:72,144:-17.9843,-12.1095,-11.5074,-6.23466,0,-5.03054	1/2:27:0,10,17:0:0:10,17:345,608:-77.9463,-49.9253,-46.915,-28.3705,0,-23.253	1/2:32:0,3,29:0:0:3,29:108,1022:-92.3718,-83.5589,-82.6558,-9.17208,0,-0.44221	1/1:116:0,115,0:0:0:115,0:4094,0:-368.284,-34.6185,0,-368.284,-34.6185,-368.284	1/1:40:0,40,0:0:0:40,0:1440,0:-129.898,-12.0412,0,-129.898,-12.0412,-129.898
chr07	1048243	.	A	G	22400.3	PASS	AB=0.513889;ABP=7.59452;AC=50;AF=0.268817;AN=186;AO=1408;CIGAR=1X;DP=4624;DPB=4624;DPRA=1.30806;EPP=3060.44;EPPR=6962.59;GTI=1;LEN=1;MEANALT=1.03846;MQM=60;MQMR=60;NS=93;NUMALT=1;ODDS=0.834048;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48925;QR=114127;RO=3213;RPL=1408;RPP=3060.44;RPPR=6962.59;RPR=0;RUN=1;SAF=0;SAP=3060.44;SAR=1408;SRF=0;SRP=6979.95;SRR=3213;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:10,13:10:360:13:451:-33.9961,0,-25.8206	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/1:70:34,36:34:1208:36:1238:-90.6478,0,-87.954	0/1:144:60,84:60:2120:84:2888:-216.813,0,-147.721	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:39:12,27:12:432:27:920:-71.3707,0,-27.481	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:29:19,10:19:671:10:344:-22.5622,0,-51.9859	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:67:36,31:36:1280:31:1080:-77.3381,0,-95.3342	0/1:72:40,32:40:1427:32:1111:-78.622,0,-107.053	0/1:45:26,19:26:932:19:664:-46.5381,0,-70.6525	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/1:39:20,19:20:712:19:676:-49.4278,0,-52.6665	0/1:23:10,13:10:356:13:464:-35.1738,0,-25.4576	0/1:19:8,11:8:288:11:383:-29.0837,0,-20.5478	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/0:77:77,0:77:2731:0:0:0,-23.1793,-246.034	0/1:50:11,39:11:388:39:1333:-105.214,0,-20.2059	0/1:36:23,13:23:824:13:456:-30.5362,0,-63.6462	0/1:16:9,7:9:324:7:231:-16.2967,0,-24.6894	0/1:18:3,15:3:108:15:528:-42.4328,0,-4.65663	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.219	0/0:115:114,0:114:4022:0:0:0,-34.3174,-361.814	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/1:148:75,73:75:2617:73:2534:-183.762,0,-191.227	0/1:48:22,26:22:780:26:920:-68.6676,0,-56.0736	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:13:4,9:4:135:9:297:-23.1368,0,-8.56912	0/1:129:66,63:66:2344:63:2175:-157.185,0,-172.387	0/1:49:20,29:20:708:29:1016:-77.0012,0,-49.2951	0/1:45:20,25:20:720:25:883:-66.2411,0,-51.5824	.:.:.:.:.:.:.:.	0/1:41:21,19:21:752:19:664:-47.8263,0,-55.7483	0/1:33:10,23:10:360:23:808:-63.1056,0,-22.8103	0/1:42:22,20:22:792:20:696:-50.3173,0,-58.9624	0/1:31:16,15:16:568:15:524:-38.1577,0,-42.1199	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:63:63,0:63:2232:0:0:0,-18.9649,-201.145	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:81:81,0:81:2869:0:0:0,-24.3834,-258.447	0/1:49:17,32:17:608:32:1105:-85.004,0,-40.3016	0/1:80:37,43:37:1312:43:1469:-108.419,0,-94.2993	0/1:35:18,17:18:631:17:596:-43.4317,0,-46.5796	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.169	0/1:33:15,18:15:536:18:620:-46.1889,0,-38.6408	0/1:4:3,1:3:104:1:32:-1.99519,0,-8.49869	0/1:79:36,43:36:1272:43:1488:-110.432,0,-91.0015	0/1:17:10,7:10:356:7:248:-17.5467,0,-27.2637	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:22:22,0:22:768:0:0:0,-6.62266,-69.4404	0/0:98:98,0:98:3474:0:0:0,-29.5009,-312.873	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:202:96,106:96:3411:106:3672:-269.884,0,-246.398	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/1:21:8,13:8:284:13:448:-34.3273,0,-19.5817	0/0:37:37,0:37:1286:0:0:0,-11.1381,-116.039	0/1:61:38,23:38:1344:23:808:-54.6773,0,-102.897	0/1:96:33,63:33:1156:63:2203:-169.637,0,-75.4475	0/1:49:31,18:31:1112:18:605:-40.0151,0,-85.6409	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:37:21,16:21:735:16:564:-39.9522,0,-55.3333	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:78:43,35:43:1535:35:1216:-86.2629,0,-114.962	0/1:48:29,19:29:1044:19:659:-45.1829,0,-79.8254	0/0:87:86,1:86:3064:1:36:0,-22.5913,-272.392	0/1:91:40,50:40:1416:50:1732:-128.712,0,-100.285	0/1:44:27,17:27:956:17:600:-41.0839,0,-73.1104	0/0:61:61,0:61:2154:0:0:0,-18.3628,-194.124	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.203	0/0:62:61,1:61:2148:1:36:0,-15.0656,-189.99	0/1:54:32,22:32:1140:22:776:-53.9065,0,-86.6536	0/1:49:28,21:28:996:21:710:-49.4616,0,-75.2044	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:102:44,58:44:1572:58:2051:-154.156,0,-111.067	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.793	0/0:58:58,0:58:2056:0:0:0,-17.4597,-185.309	0/1:51:29,22:29:1036:22:776:-54.8096,0,-78.2014	0/1:125:73,52:73:2593:52:1836:-127.892,0,-195.989	0/1:43:14,29:14:500:29:999:-77.2748,0,-32.3919	0/0:124:124,0:124:4409:0:0:0,-37.3277,-396.984	0/0:86:86,0:86:3060:0:0:0,-25.8886,-275.631
chr07	1049859	.	ATATG	ATATA,ATTATA	136892	PASS	AB=0.418964,0.576656;ABP=224.377,201.092;AC=135,53;AF=0.718085,0.281915;AN=188;AO=4280,2242;CIGAR=4M1X,1M1I3M1X;DP=6549;DPB=6999.2;DPRA=47.4348,1.22286;EPP=9270.87,4854.1;EPPR=5.18177;GTI=4;LEN=1,6;MEANALT=1.81522,2.26923;MQM=59.9907,45.4451;MQMR=60;NS=94;NUMALT=2;ODDS=0.366247;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=153076,79260;QR=36;RO=1;RPL=3,2;RPP=9270.87,4854.1;RPPR=5.18177;RPR=4277,2240;RUN=1,1;SAF=4280,2242;SAP=9296.91,4871.45;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,20,18:0:0:20,18:716,624:-108.275,-49.8762,-43.8556,-58.7471,0,-53.3286	1/2:79:0,25,54:0:0:25,54:900,1907:-226.993,-153.554,-146.028,-73.7953,0,-57.5396	1/2:75:0,30,45:0:0:30,45:1065,1602:-216.021,-129.245,-120.215,-87.1289,0,-73.5825	1/2:155:0,65,90:0:0:65,90:2336,3158:-442.307,-251.727,-232.16,-190.932,0,-163.84	1/1:57:0,56,0:0:0:56,0:2012,0:-181.052,-16.8577,0,-181.052,-16.8577,-181.052	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/2:117:0,43,72:0:0:43,72:1536,2534:-328.289,-203.052,-190.108,-125.346,0,-103.672	1/1:118:0,117,0:0:0:117,0:4164,0:-374.66,-35.2205,0,-374.66,-35.2205,-374.66	1/1:105:0,105,0:0:0:105,0:3772,0:-339.678,-31.6082,0,-339.678,-31.6082,-339.678	1/2:53:0,15,38:0:0:15,38:540,1349:-153.057,-108.993,-104.477,-44.4211,0,-32.9819	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/2:41:0,12,29:0:0:12,29:416,1032:-117.075,-83.2704,-79.658,-34.1521,0,-25.4222	1/2:26:0,8,18:0:0:8,18:288,645:-75.2535,-51.7514,-49.3431,-23.8592,0,-18.4406	1/2:42:0,14,28:0:0:14,28:504,1002:-121.668,-80.5418,-76.3274,-41.4837,0,-33.0548	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/2:26:0,9,17:0:0:9,17:309,591:-72.9537,-47.8657,-45.1564,-25.4314,0,-20.3139	1/2:33:0,11,22:0:0:11,22:396,780:-95.3928,-63.078,-59.7666,-32.6714,0,-26.0488	1/2:37:0,8,28:0:0:8,28:284,1001:-103.866,-80.7247,-78.3164,-23.2027,0,-14.7738	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/1:130:0,130,0:0:0:130,0:4644,0:-418.121,-39.1339,0,-418.121,-39.1339,-418.121	1/1:87:0,86,0:0:0:86,0:3087,0:-277.778,-25.8886,0,-277.778,-25.8886,-277.778	1/2:115:0,36,79:0:0:36,79:1273,2781:-326.808,-223.125,-212.288,-104.034,0,-80.2525	1/2:73:0,35,38:0:0:35,38:1256,1322:-209.001,-106.543,-96.0074,-102.809,0,-91.3701	1/2:106:0,67,39:0:0:67,39:2400,1381:-307.286,-111.551,-91.3823,-196.088,0,-184.348	1/2:94:0,44,50:0:0:44,50:1580,1769:-270.697,-141.805,-128.56,-129.246,0,-114.195	1/1:217:0,217,0:0:0:217,0:7740,0:-696.63,-65.3235,0,-696.63,-65.3235,-696.63	1/1:151:0,150,0:0:0:150,0:5392,0:-485.108,-45.1545,0,-485.108,-45.1545,-485.108	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:209:0,95,114:0:0:95,114:3399,4039:-599.854,-322.71,-294.112,-277.497,0,-243.179	1/2:113:0,40,73:0:0:40,73:1440,2569:-323.997,-206.496,-194.455,-117.857,0,-95.8813	1/1:89:0,89,0:0:0:89,0:3188,0:-287.144,-26.7917,0,-287.144,-26.7917,-287.144	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:15:0,6,9:0:0:6,9:212,315:-42.9707,-25.7026,-23.8964,-17.6186,0,-14.9093	1/2:114:0,43,71:0:0:43,71:1538,2522:-327.917,-202.503,-189.559,-125.769,0,-104.395	1/2:236:1,79,153:1:36:79,153:2836,5432:-663.481,-432.44,-411.597,-228.441,0,-185.321	1/2:39:0,20,19:0:0:20,19:716,673:-112.944,-54.5507,-48.5301,-58.7471,0,-53.0275	2/2:2:0,0,2:0:0:0,2:0,72:-6.63311,-6.63311,-6.63311,-0.60206,-0.60206,0	1/2:118:0,50,68:0:0:50,68:1785,2418:-339.813,-194.288,-179.236,-145.879,0,-125.409	1/2:18:0,7,11:0:0:7,11:252,384:-51.8289,-31.2615,-29.1543,-20.9217,0,-17.6104	1/2:118:0,63,54:0:0:63,54:2223,1877:-331.69,-150.673,-131.708,-181.03,0,-164.774	1/2:37:0,16,21:0:0:16,21:576,743:-106.719,-59.7146,-54.8982,-47.3585,0,-41.0369	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/1:89:0,89,0:0:0:89,0:3200,0:-288.222,-26.7917,0,-288.222,-26.7917,-288.222	1/1:73:0,73,0:0:0:73,0:2566,0:-231.183,-21.9752,0,-231.183,-21.9752,-231.183	1/1:134:0,133,0:0:0:133,0:4753,0:-427.645,-40.037,0,-427.645,-40.037,-427.645	1/2:90:0,53,37:0:0:53,37:1889,1302:-258.86,-104.88,-88.925,-154.332,0,-143.194	1/2:83:0,26,57:0:0:26,57:932,2023:-238.683,-162.666,-154.839,-76.3721,0,-59.2134	1/2:146:0,75,70:0:0:75,70:2643,2448:-411.627,-196.439,-173.862,-215.236,0,-194.164	1/1:12:0,12,0:0:0:12,0:421,0:-38.2234,-3.61236,0,-38.2234,-3.61236,-38.2234	1/1:111:0,111,0:0:0:111,0:3973,0:-357.759,-33.4143,0,-357.759,-33.4143,-357.759	1/2:43:0,23,20:0:0:23,20:827,703:-123.779,-56.3001,-49.3765,-67.8303,0,-61.8097	1/2:4:0,3,1:0:0:3,1:100,36:-11.3342,-3.25759,-2.3545,-8.42677,0,-8.12574	1/2:105:0,41,64:0:0:41,64:1453,2258:-299.901,-181.531,-169.189,-118.722,0,-99.4558	1/2:33:0,19,14:0:0:19,1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chr07	1049889	.	C	T	37036.4	PASS	AB=0.576872;ABP=196.978;AC=53;AF=0.281915;AN=188;AO=2184;CIGAR=1X;DP=6407;DPB=6407;DPRA=1.20902;EPP=4745.51;EPPR=9162.28;GTI=3;LEN=1;MEANALT=1.01923;MQM=45.4377;MQMR=59.986;NS=94;NUMALT=1;ODDS=0.188843;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78015;QR=149264;RO=4218;RPL=2184;RPP=4745.51;RPPR=9162.28;RPR=0;RUN=1;SAF=2184;SAP=4745.51;SAR=0;SRF=4218;SRP=9162.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:20,17:20:686:17:608:-42.7668,0,-50.9176	0/1:77:25,52:25:896:52:1861:-142.586,0,-57.781	0/1:75:29,45:29:1031:45:1608:-120.546,0,-70.4667	0/1:148:61,87:61:2167:87:3116:-229.777,0,-150.744	0/0:57:57,0:57:1984:0:0:0,-17.1587,-178.83	0/0:31:31,0:31:1063:0:0:0,-9.33193,-95.971	0/1:114:42,72:42:1475:72:2566:-192.405,0,-98.7236	0/0:120:120,0:120:4222:0:0:0,-36.1236,-380.161	0/0:106:106,0:106:3783:0:0:0,-31.9092,-340.669	0/1:52:15,37:15:540:37:1328:-102.831,0,-33.283	0/0:24:24,0:24:833:0:0:0,-7.22472,-75.2847	0/1:41:12,29:12:415:29:1036:-79.6929,0,-25.3146	0/1:26:8,18:8:288:18:648:-49.5331,0,-18.4406	0/1:40:14,26:14:481:26:936:-71.03,0,-31.5739	0/0:24:24,0:24:843:0:0:0,-7.22472,-76.188	0/1:24:8,16:8:275:16:572:-44.0051,0,-17.8588	0/1:32:10,22:10:352:22:767:-59.0015,0,-22.3852	0/1:37:8,29:8:288:29:1044:-81.5756,0,-15.1293	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:125:124,0:124:4380:0:0:0,-37.3277,-394.012	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.318	0/1:111:35,76:35:1243:76:2699:-205.939,0,-78.7595	0/1:72:35,37:35:1230:37:1292:-93.4476,0,-89.3283	0/1:101:62,39:62:2170:39:1396:-94.1814,0,-165.16	0/1:95:45,50:45:1608:50:1788:-129.521,0,-116.412	0/0:212:212,0:212:7539:0:0:0,-63.8184,-678.55	0/0:149:148,0:148:5251:0:0:0,-44.5524,-472.37	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:201:90,111:90:3210:111:3980:-290.997,0,-228.587	0/1:112:42,70:42:1504:70:2490:-187.399,0,-101.939	0/0:86:86,0:86:3045:0:0:0,-25.8886,-274.28	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:15:6,9:6:216:9:324:-24.6652,0,-15.2751	0/1:113:44,69:44:1528:69:2472:-185.15,0,-103.79	0/1:230:77,153:77:2725:153:5451:-413.286,0,-176.256	0/1:38:20,18:20:703:18:644:-46.2262,0,-52.1544	1/1:2:0,2:0:0:2:72:-6.63311,-0.60206,0	0/1:114:49,65:49:1752:65:2328:-172.344,0,-123.647	0/1:15:6,9:6:198:9:324:-24.6652,0,-13.6278	0/1:114:61,53:61:2161:53:1889:-133.622,0,-160.438	0/1:37:16,21:16:572:21:748:-55.2732,0,-40.6753	0/0:26:26,0:26:904:0:0:0,-7.82678,-81.6719	0/0:90:89,0:89:3196:0:0:0,-26.7917,-287.503	0/0:71:71,0:71:2526:0:0:0,-21.3731,-227.58	0/0:129:129,0:129:4572:0:0:0,-38.8329,-411.645	0/1:86:53,33:53:1892:33:1184:-79.5369,0,-144.67	0/1:81:25,56:25:872:56:2016:-154.562,0,-54.4102	0/1:139:74,65:74:2632:65:2306:-163.166,0,-195.282	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8579	0/0:111:111,0:111:3938:0:0:0,-33.4143,-354.612	0/1:42:22,20:22:779:20:708:-50.1029,0,-57.7888	0/1:4:3,1:3:108:1:36:-2.3545,0,-8.87105	0/1:103:42,61:42:1466:61:2184:-163.386,0,-101.224	0/1:34:20,14:20:705:14:496:-34.2576,0,-53.5378	1/1:1:0,1:0:0:1:36:-3.55862,-0.30103,0	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:64:64,0:64:2247:0:0:0,-19.2659,-202.491	0/0:59:58,1:58:2052:1:36:0,-14.2022,-181.391	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:148:77,71:77:2764:71:2527:-178.644,0,-204.449	0/0:145:145,0:145:5137:0:0:0,-43.6493,-462.473	0/1:48:15,33:15:536:33:1162:-89.1147,0,-34.1254	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/1:156:65,91:65:2313:91:3261:-241.743,0,-161.468	0/1:100:35,65:35:1226:65:2317:-174.36,0,-80.5392	0/1:14:4,10:4:144:10:360:-28.169,0,-9.0992	0/0:52:52,0:52:1825:0:0:0,-15.6536,-164.526	0/1:79:34,45:34:1153:45:1612:-119.167,0,-80.2839	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9546	0/1:124:62,62:62:2186:62:2215:-159.757,0,-159.675	0/1:45:29,16:29:1022:16:576:-38.0536,0,-78.7445	0/0:172:172,0:172:6092:0:0:0,-51.7772,-548.382	0/1:128:43,85:43:1525:85:3051:-231.835,0,-99.0093	0/1:82:32,50:32:1105:50:1781:-133.35,0,-75.0673	0/0:56:56,0:56:1982:0:0:0,-16.8577,-178.653	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.231	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/0:90:90,0:90:3192:0:0:0,-27.0927,-287.503	0/1:76:39,37:39:1353:37:1328:-95.3365,0,-99.1851	0/1:26:10,16:10:351:16:568:-43.0925,0,-24.0999	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/1:69:29,40:29:1021:40:1432:-106.01,0,-71.4292	0/0:22:22,0:22:767:0:0:0,-6.62266,-69.3494	0/0:41:40,0:40:1428:0:0:0,-12.0412,-128.458	0/0:30:30,0:30:1054:0:0:0,-9.0309,-95.1692	0/1:31:12,19:12:420:19:680:-51.5363,0,-28.8021	0/1:59:27,32:27:968:32:1148:-83.0313,0,-69.6766	0/1:34:6,28:6:208:28:1008:-79.798,0,-8.82406	0/0:64:64,0:64:2230:0:0:0,-19.2659,-200.959	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663
chr07	1050038	.	G	A	106816	PASS	AB=0.469438;ABP=35.7941;AC=135;AF=0.718085;AN=188;AO=5222;CIGAR=1X;DP=7373;DPB=7373;DPRA=0;EPP=11342.4;EPPR=4671.68;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9763;MQMR=60;NS=94;NUMALT=1;ODDS=0.412591;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185376;QR=76409;RO=2150;RPL=0;RPP=11342.4;RPPR=4671.68;RPR=5222;RUN=1;SAF=0;SAP=11342.4;SAR=5222;SRF=0;SRP=4671.68;SRR=2150;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:20,14:20:712:14:491:-34.2861,0,-54.1716	0/1:132:71,61:71:2539:61:2177:-156.459,0,-189.024	0/1:136:56,80:56:1989:80:2819:-213.006,0,-138.342	0/1:207:109,98:109:3889:98:3478:-250.918,0,-287.89	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	1/1:26:0,26:0:0:26:920:-83.1171,-7.82678,0	0/1:125:76,49:76:2685:49:1755:-120.605,0,-204.266	1/1:176:0,176:0:0:176:6241:-561.787,-52.9813,0	1/1:74:0,74:0:0:74:2589:-233.256,-22.2762,0	0/1:62:39,23:39:1388:23:828:-56.1803,0,-106.555	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2693	0/1:29:16,13:16:568:13:460:-33.0055,0,-42.722	0/1:36:23,13:23:819:13:468:-31.6226,0,-63.1945	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:25:15,10:15:540:10:356:-24.8555,0,-41.4108	0/1:24:14,10:14:495:10:356:-25.1565,0,-37.6583	0/1:24:17,7:17:608:7:248:-15.4395,0,-47.8273	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:185:0,185:0:0:185:6547:-589.303,-55.6906,0	1/1:102:0,102:0:0:102:3633:-327.176,-30.7051,0	0/1:121:77,44:77:2753:44:1576:-105.707,0,-211.586	0/1:107:35,72:35:1244:72:2551:-197.628,0,-80.0545	0/1:131:59,72:59:2101:72:2524:-187.974,0,-149.923	0/1:62:36,26:36:1288:26:927:-65.0835,0,-97.5597	1/1:299:0,299:0:0:299:10623:-955.979,-90.008,0	1/1:156:0,156:0:0:156:5583:-502.592,-46.9607,0	1/1:12:0,12:0:0:12:422:-38.3146,-3.61236,0	0/1:179:85,94:85:3000:94:3357:-248.461,0,-216.348	0/1:117:65,52:65:2332:52:1847:-131.289,0,-174.919	1/1:130:2,128:2:72:128:4551:-402.92,-32.2972,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:93:66,27:66:2368:27:952:-57.9994,0,-185.382	0/1:230:138,92:138:4908:92:3272:-225.462,0,-372.635	0/1:20:17,3:17:599:3:108:-4.05457,0,-48.2175	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:125:53,72:53:1896:72:2555:-192.572,0,-133.289	0/1:17:8,9:8:280:9:324:-24.3883,0,-20.4218	0/1:138:64,74:64:2275:74:2629:-195.314,0,-163.47	0/1:43:24,19:24:864:19:676:-48.2237,0,-65.1383	1/1:15:0,15:0:0:15:518:-46.9455,-4.51545,0	1/1:111:0,111:0:0:111:3946:-355.331,-33.4143,0	1/1:136:3,133:3:108:133:4727:-415.515,-30.8649,0	1/1:195:0,195:0:0:195:6924:-623.001,-58.7009,0	0/1:93:45,48:45:1569:48:1711:-126.28,0,-113.5	0/1:129:65,64:65:2304:64:2281:-166.717,0,-168.786	0/1:142:77,65:77:2694:65:2315:-165.864,0,-199.955	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:162:0,162:0:0:162:5775:-519.863,-48.7669,0	0/1:35:18,17:18:640:17:604:-44.1546,0,-47.3933	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:109:62,47:62:2202:47:1687:-119.305,0,-165.632	0/1:41:18,23:18:648:23:815:-61.3285,0,-46.3097	0/1:5:4,1:4:131:1:36:-2.09312,0,-10.6083	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:48:0,48:0:0:48:1711:-154.275,-14.4494,0	1/1:35:0,35:0:0:35:1233:-111.272,-10.5361,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:218:110,108:110:3898:108:3861:-282.059,0,-285.389	1/1:221:2,219:2:72:219:7754:-691.046,-59.6909,0	0/1:24:13,11:13:456:11:392:-28.3953,0,-34.1485	1/1:101:0,101:0:0:101:3600:-324.207,-30.404,0	0/1:248:125,123:125:4475:123:4361:-318.009,0,-328.263	0/1:103:71,32:71:2535:32:1135:-71.4508,0,-197.395	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:52:0,52:0:0:52:1829:-164.889,-15.6536,0	0/1:54:33,21:33:1124:21:743:-50.9377,0,-85.2031	1/1:23:0,23:0:0:23:778:-70.3299,-6.92369,0	0/1:86:46,40:46:1639:40:1420:-102.209,0,-121.909	0/1:25:13,12:13:468:12:417:-30.3345,0,-34.9339	1/1:166:0,166:0:0:166:5907:-531.74,-49.971,0	0/1:130:68,62:68:2440:62:2209:-159.939,0,-180.721	0/1:94:44,50:44:1557:50:1779:-132.095,0,-112.123	1/1:70:0,70:0:0:70:2474:-222.907,-21.0721,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:105:0,105:0:0:105:3760:-338.6,-31.6082,0	1/1:114:0,114:0:0:114:3989:-359.202,-34.3174,0	1/1:182:0,182:0:0:182:6448:-580.406,-54.7875,0	0/1:56:26,29:26:909:29:1032:-76.422,0,-65.3516	0/1:25:16,9:16:563:9:310:-20.7076,0,-43.4734	1/1:21:0,21:0:0:21:728:-65.8391,-6.32163,0	0/1:43:26,17:26:927:17:608:-42.1077,0,-70.8031	1/1:37:0,37:0:0:37:1294:-116.569,-11.1381,0	1/1:35:0,35:0:0:35:1240:-111.904,-10.5361,0	1/1:22:0,22:0:0:22:771:-69.7103,-6.62266,0	0/1:21:14,7:14:489:7:252:-16.7073,0,-38.0173	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:47:30,17:30:1053:17:595:-39.7283,0,-80.9302	1/1:102:0,102:0:0:102:3594:-323.668,-30.7051,0	1/1:25:0,25:0:0:25:877:-79.2452,-7.52575,0
chr07	1050178	.	G	T	60457.5	PASS	AB=0.51092;ABP=10.1242;AC=51;AF=0.271277;AN=188;AO=3517;CIGAR=1X;DP=12303;DPB=12303;DPRA=1.23009;EPP=7570.75;EPPR=18800.3;GTI=0;LEN=1;MEANALT=1.03571;MQM=59.9613;MQMR=59.981;NS=94;NUMALT=1;ODDS=3.67115;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125833;QR=314163;RO=8784;RPL=8;RPP=7570.75;RPPR=18800.3;RPR=3509;RUN=1;SAF=3517;SAP=7640.08;SAR=0;SRF=8784;SRP=19077.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:200:87,113:87:3101:113:4053:-304.747,0,-219.107	0/1:124:58,66:58:2080:66:2344:-173.89,0,-150.143	0/1:370:183,187:183:6552:187:6682:-490.07,0,-478.381	0/0:44:43,1:43:1540:1:36:0,-9.64704,-135.295	0/0:114:114,0:114:4087:0:0:0,-34.3174,-368.015	0/1:187:89,98:89:3180:98:3513:-260.087,0,-230.132	0/0:249:249,0:249:8924:0:0:0,-74.9565,-803.127	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/1:210:86,124:86:3076:124:4443:-336.817,0,-213.852	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/1:84:44,40:44:1580:40:1440:-104.611,0,-117.205	0/1:73:30,43:30:1080:43:1548:-117.638,0,-75.5381	0/1:148:78,69:78:2800:69:2458:-176.862,0,-207.626	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.553	0/1:58:27,31:27:968:31:1116:-83.292,0,-69.9776	0/1:108:64,44:64:2277:44:1566:-108.719,0,-172.679	0/1:96:53,43:53:1891:43:1548:-110.714,0,-141.569	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:206:204,2:204:7305:2:72:0,-55.1755,-650.662	0/0:214:214,0:214:7646:0:0:0,-64.4204,-688.17	0/1:78:35,43:35:1260:43:1531:-114.602,0,-90.2251	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	0/1:187:87,100:87:3086:100:3589:-266.923,0,-221.674	0/1:79:35,44:35:1256:44:1575:-118.259,0,-89.5639	0/0:456:454,2:454:16276:2:72:0,-130.599,-1457.83	0/0:296:296,0:296:10519:0:0:0,-89.1049,-946.626	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:488:247,241:247:8816:241:8629:-629.594,0,-646.524	0/1:230:118,112:118:4228:112:4012:-292.032,0,-311.463	0/0:182:182,0:182:6525:0:0:0,-54.7875,-587.33	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5384	0/1:169:91,78:91:3272:78:2808:-202.085,0,-243.825	0/1:234:126,108:126:4492:108:3869:-277.961,0,-334.007	0/1:96:62,34:62:2215:34:1224:-81.5682,0,-170.715	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:252:103,149:103:3681:149:5327:-403.703,0,-255.632	0/1:30:21,9:21:741:9:324:-20.475,0,-57.2775	0/1:191:86,105:86:3075:105:3761:-281.188,0,-219.481	0/1:64:27,37:27:972:37:1332:-100.916,0,-68.532	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:141:141,0:141:5060:0:0:0,-42.4452,-455.544	0/0:259:259,0:259:9285:0:0:0,-77.9668,-835.613	0/1:164:78,86:78:2773:86:3071:-227.25,0,-200.44	0/1:314:122,192:122:4359:192:6829:-520.156,0,-297.961	0/1:199:90,108:90:3224:108:3854:-287.085,0,-230.418	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:169:169,0:169:6046:0:0:0,-50.8741,-544.24	0/1:109:47,62:47:1662:62:2226:-167.791,0,-117.05	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/1:181:86,95:86:3025:95:3388:-250.647,0,-217.991	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:216:216,0:216:7735:0:0:0,-65.0225,-696.18	0/0:142:140,2:140:5000:2:72:0,-35.9095,-443.312	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:245:125,120:125:4464:120:4307:-314.052,0,-328.179	0/0:259:259,0:259:9264:0:0:0,-77.9668,-833.724	0/1:106:59,47:59:2112:47:1688:-120.298,0,-158.44	0/0:137:137,0:137:4898:0:0:0,-41.2411,-440.914	0/1:142:73,69:73:2596:69:2437:-176.835,0,-191.143	0/1:197:65,132:65:2317:132:4713:-365.025,0,-149.486	0/1:43:19,24:19:684:24:850:-63.8739,0,-48.946	0/0:105:105,0:105:3741:0:0:0,-31.6081,-336.89	0/1:127:64,63:64:2288:63:2252:-164.712,0,-167.951	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:89:56,33:56:1989:33:1184:-80.0766,0,-152.491	0/1:87:43,44:43:1540:44:1572:-115.581,0,-112.703	0/0:221:221,0:221:7884:0:0:0,-66.5276,-709.561	0/1:244:144,100:144:5156:100:3588:-249.675,0,-390.73	0/1:157:92,65:92:3296:65:2320:-161.798,0,-249.597	0/0:213:212,1:212:7588:1:24:0,-61.7195,-680.402	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:191:191,0:191:6835:0:0:0,-57.4967,-615.22	0/0:150:150,0:150:5368:0:0:0,-45.1545,-483.252	0/0:284:284,0:284:10158:0:0:0,-85.4925,-914.15	0/1:94:51,43:51:1832:43:1548:-111.316,0,-136.864	0/1:66:37,29:37:1320:29:1036:-73.6859,0,-99.234	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/1:149:80,69:80:2864:69:2463:-177.07,0,-213.144	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:62:31,31:31:1104:31:1116:-82.0878,0,-81.0068	0/1:141:74,67:74:2648:67:2412:-174.891,0,-196.121	0/1:67:24,43:24:860:43:1527:-117.553,0,-57.5528	0/0:146:146,0:146:5209:0:0:0,-43.9504,-468.946	0/0:108:108,0:108:3867:0:0:0,-32.5112,-348.224
chr07	1052637	.	T	C	178154	PASS	AB=0.507129;ABP=5.51814;AC=135;AF=0.725806;AN=186;AO=6760;CIGAR=1X;DP=9571;DPB=9571;DPRA=0;EPP=14526.2;EPPR=6050.67;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.9308;MQMR=60;NS=93;NUMALT=1;ODDS=0.171098;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240022;QR=99026;RO=2809;RPL=3484;RPP=16.9077;RPPR=157.471;RPR=3276;RUN=1;SAF=3500;SAP=21.5128;SAR=3260;SRF=1634;SRP=165.875;SRR=1175;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/1:82:30,52:30:1063:52:1828:-140.113,0,-71.2964	0/1:91:33,58:33:1184:58:2071:-159.266,0,-79.4746	0/1:227:127,100:127:4425:100:3572:-253.352,0,-330.094	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:203:-18.6012,-1.80618,0	0/1:142:68,74:68:2419:74:2627:-193.932,0,-175.22	1/1:93:0,93:0:0:93:3330:-299.917,-27.9958,0	1/1:114:0,114:0:0:114:4047:-364.416,-34.3174,0	0/1:172:93,79:93:3284:79:2760:-196.864,0,-244.006	1/1:145:1,144:1:36:144:5093:-454.915,-40.0511,0	0/1:199:100,99:100:3495:99:3481:-253.437,0,-254.86	0/1:187:93,94:93:3263:94:3366:-246.857,0,-237.6	0/1:157:77,80:77:2730:80:2824:-207.137,0,-198.681	1/1:147:0,147:0:0:147:5211:-469.127,-44.2514,0	0/1:178:91,87:91:3239:87:3098:-225.464,0,-238.149	0/1:81:32,49:32:1132:49:1756:-133.94,0,-77.8052	0/1:88:47,41:47:1651:41:1439:-103.312,0,-122.386	1/1:91:0,91:0:0:91:3238:-291.642,-27.3937,0	1/1:79:0,79:0:0:79:2818:-253.857,-23.7814,0	1/1:195:0,195:0:0:195:6960:-626.46,-58.7009,0	0/1:21:18,3:18:612:3:108:-3.75354,0,-49.0759	0/1:93:39,54:39:1360:54:1924:-145.441,0,-94.6998	0/1:86:35,51:35:1235:51:1828:-138.911,0,-85.5649	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	1/1:216:0,216:0:0:216:7668:-690.149,-65.0225,0	1/1:177:0,177:0:0:177:6281:-565.374,-53.2823,0	1/1:80:0,80:0:0:80:2828:-254.759,-24.0824,0	0/1:231:106,125:106:3735:125:4437:-329.965,0,-266.818	0/1:98:38,60:38:1342:60:2124:-161.924,0,-91.5776	1/1:127:0,127:0:0:127:4505:-405.611,-38.2308,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:3,6:3:99:6:216:-17.0812,0,-6.52731	0/1:307:146,161:146:5153:161:5705:-421.153,0,-371.502	0/1:42:26,16:26:924:16:576:-39.5302,0,-70.8344	0/1:99:41,58:41:1446:58:2047:-154.697,0,-100.632	0/1:4:2,2:2:64:2:72:-5.6326,0,-4.87457	0/1:95:54,41:54:1919:41:1468:-103.815,0,-144.389	0/1:58:26,32:26:909:32:1143:-85.719,0,-64.6637	0/1:47:29,18:29:1024:18:629:-42.7854,0,-78.3242	0/1:117:59,58:59:2078:58:2058:-150.268,0,-152.069	1/1:110:1,109:1:36:109:3860:-343.992,-29.515,0	1/1:101:0,101:0:0:101:3587:-323.001,-30.404,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:159:0,159:0:0:159:5646:-508.255,-47.8638,0	0/1:73:37,36:37:1328:36:1284:-93.8882,0,-97.847	0/1:152:85,66:85:3007:66:2370:-167.696,0,-225.048	0/1:88:36,52:36:1262:52:1864:-141.549,0,-87.3903	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:41:0,41:0:0:41:1472:-132.775,-12.3422,0	0/1:103:56,47:56:1971:47:1664:-119.041,0,-146.659	0/1:9:2,7:2:72:7:248:-19.9546,0,-4.12745	0/1:115:60,55:60:2136:55:1980:-143.856,0,-157.89	0/1:46:20,26:20:697:26:924:-69.6297,0,-49.2033	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:74:0,74:0:0:74:2623:-236.315,-22.2762,0	1/1:170:1,169:1:36:169:5986:-535.249,-47.5768,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:175:104,71:104:3679:71:2491:-171.759,0,-278.634	1/1:130:0,130:0:0:130:4614:-415.377,-39.1339,0	0/1:103:52,51:52:1848:51:1814:-132.531,0,-135.594	1/1:55:1,54:1:36:54:1920:-169.478,-12.9584,0	0/1:130:70,60:70:2473:60:2138:-153.552,0,-183.69	0/1:94:68,26:68:2400:26:932:-55.9016,0,-187.962	0/1:101:40,61:40:1414:61:2169:-165.07,0,-97.1518	1/1:47:2,45:2:72:45:1616:-138.893,-7.31169,0	0/1:79:25,54:25:880:54:1919:-149.184,0,-55.7363	1/1:32:0,32:0:0:32:1144:-103.269,-9.63296,0	0/1:81:43,38:43:1519:38:1334:-95.974,0,-112.619	0/1:163:68,95:68:2379:95:3353:-252.914,0,-165.299	1/1:91:0,91:0:0:91:3210:-289.118,-27.3937,0	0/1:143:62,81:62:2163:81:2894:-217.647,0,-151.888	0/1:5:4,1:4:136:1:36:-2.09312,0,-11.0704	1/1:177:1,176:1:32:176:6243:-558.765,-50.083,0	1/1:20:1,19:1:36:19:678:-57.7501,-2.42233,0	1/1:84:0,84:0:0:84:2985:-268.879,-25.2865,0	1/1:93:0,93:0:0:93:3309:-298.025,-27.9958,0	1/1:218:0,218:0:0:218:7747:-697.264,-65.6245,0	0/1:106:57,49:57:2003:49:1746:-125.512,0,-148.632	0/1:175:79,96:79:2779:96:3382:-251.912,0,-197.67	1/1:94:0,94:0:0:94:3345:-301.267,-28.2968,0	0/1:251:116,135:116:4058:135:4772:-354.08,0,-289.852	1/1:44:1,43:1:36:43:1532:-134.575,-9.64705,0	1/1:131:0,130:0:0:130:4594:-413.228,-39.1339,0	1/1:156:0,156:0:0:156:5567:-501.152,-46.9607,0	0/1:141:66,75:66:2342:75:2674:-198.459,0,-168.593	0/1:242:107,135:107:3789:135:4740:-353.905,0,-268.361	0/1:146:101,45:101:3550:45:1602:-100.516,0,-275.763	1/1:79:0,79:0:0:79:2804:-252.6,-23.7814,0	1/1:245:1,244:1:36:244:8648:-774.719,-70.1541,0
chr07	1052652	.	G	A	178659	PASS	AB=0.487024;ABP=11.6889;AC=135;AF=0.725806;AN=186;AO=6795;CIGAR=1X;DP=9853;DPB=9853;DPRA=0;EPP=14758.2;EPPR=6641.2;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.9258;MQMR=59.9997;NS=93;NUMALT=1;ODDS=0.202008;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242328;QR=108047;RO=3057;RPL=3491;RPP=14.1853;RPPR=40.2606;RPR=3304;RUN=1;SAF=3491;SAP=14.1853;SAR=3304;SRF=1643;SRP=40.2606;SRR=1414;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:9,6:9:292:6:216:-15.2751,0,-22.0796	0/1:86:33,53:33:1156:53:1904:-145.749,0,-78.4551	0/1:94:36,58:36:1292:58:2080:-159.173,0,-88.2869	0/1:233:131,102:131:4641:102:3631:-256.856,0,-347.714	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:152:78,74:78:2734:74:2647:-192.719,0,-200.543	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	1/1:117:0,117:0:0:117:4164:-374.939,-35.2205,0	0/1:170:94,76:94:3334:76:2706:-192.608,0,-249.101	1/1:147:1,146:1:36:146:5220:-466.339,-40.6531,0	0/1:209:111,98:111:3917:98:3458:-248.352,0,-289.809	0/1:191:97,94:97:3459:94:3358:-244.933,0,-254.026	0/1:167:85,82:85:3006:82:2910:-211.861,0,-220.501	1/1:149:0,149:0:0:149:5352:-481.802,-44.8535,0	0/1:178:92,86:92:3262:86:3080:-223.845,0,-240.216	0/1:87:38,49:38:1322:49:1741:-130.782,0,-93.0856	0/1:90:49,41:49:1716:41:1472:-105.683,0,-127.63	1/1:89:0,89:0:0:89:3173:-285.793,-26.7917,0	1/1:79:0,79:0:0:79:2807:-252.865,-23.7814,0	1/1:197:0,197:0:0:197:7063:-635.722,-59.3029,0	0/1:24:21,3:21:752:3:108:-2.85045,0,-60.7815	0/1:99:45,54:45:1601:54:1931:-144.264,0,-114.576	0/1:84:35,49:35:1230:49:1752:-132.677,0,-85.7159	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	1/1:212:0,212:0:0:212:7539:-678.549,-63.8184,0	1/1:180:0,180:0:0:180:6356:-572.122,-54.1854,0	1/1:79:0,79:0:0:79:2816:-253.68,-23.7814,0	0/1:242:117,125:117:4123:125:4445:-327.373,0,-298.406	0/1:102:41,61:41:1451:61:2187:-166.388,0,-100.18	1/1:131:0,131:0:0:131:4640:-417.763,-39.4349,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:234:-21.3858,-2.10721,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:3,6:3:99:6:216:-17.0812,0,-6.52731	0/1:314:153,161:153:5381:161:5722:-420.577,0,-389.903	0/1:43:27,16:27:955:16:576:-39.2291,0,-73.3206	0/1:102:44,58:44:1544:58:2057:-154.694,0,-108.544	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:98:56,42:56:1995:42:1489:-104.798,0,-150.322	0/1:63:29,34:29:1025:34:1207:-89.9704,0,-73.5958	0/1:50:31,19:31:1081:19:680:-46.4777,0,-82.5449	0/1:118:61,57:61:2159:57:2016:-146.19,0,-159.055	1/1:110:1,109:1:32:109:3897:-347.718,-29.914,0	1/1:100:0,100:0:0:100:3558:-320.4,-30.103,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:160:0,160:0:0:160:5701:-513.203,-48.1648,0	0/1:77:42,35:42:1499:35:1248:-89.4456,0,-112.025	0/1:165:94,71:94:3337:71:2547:-179.763,0,-250.875	0/1:94:41,53:41:1443:53:1888:-141.9,0,-101.868	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:43:0,43:0:0:43:1536:-138.532,-12.9443,0	0/1:111:63,48:63:2153:48:1724:-122.031,0,-160.616	0/1:9:2,7:2:72:7:252:-20.3188,0,-4.12745	0/1:125:66,59:66:2331:59:2099:-151.548,0,-172.419	0/1:47:24,23:24:849:23:828:-60.6957,0,-62.5794	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:74:0,74:0:0:74:2648:-238.563,-22.2762,0	1/1:176:1,175:1:36:175:6201:-554.47,-49.383,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:184:114,70:114:4064:70:2484:-168.418,0,-310.559	1/1:127:0,127:0:0:127:4537:-408.493,-38.2308,0	0/1:107:53,54:53:1885:54:1936:-142.302,0,-137.716	1/1:55:1,54:1:36:54:1917:-169.207,-12.9584,0	0/1:137:77,60:77:2740:60:2148:-152.346,0,-205.6	0/1:105:79,26:79:2803:26:914:-50.9657,0,-220.903	0/1:105:43,62:43:1508:62:2203:-166.927,0,-104.402	1/1:47:2,45:2:72:45:1597:-137.182,-7.31169,0	0/1:80:27,53:27:963:53:1884:-145.754,0,-62.9035	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:85:47,38:47:1676:38:1364:-97.4723,0,-125.54	0/1:163:69,94:69:2429:94:3346:-252.287,0,-169.795	1/1:92:0,92:0:0:92:3278:-295.236,-27.6948,0	0/1:152:73,79:73:2592:79:2832:-209.361,0,-187.771	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:175:2,173:2:72:173:6165:-548.108,-45.8435,0	1/1:20:1,19:1:36:19:684:-58.2921,-2.42233,0	1/1:83:0,83:0:0:83:2984:-268.788,-24.9855,0	1/1:97:0,97:0:0:97:3484:-313.695,-29.1999,0	1/1:218:2,216:2:72:216:7724:-688.353,-58.7878,0	0/1:113:64,49:64:2252:49:1760:-124.666,0,-168.925	0/1:181:85,96:85:3007:96:3395:-251.274,0,-216.374	1/1:96:0,96:0:0:96:3428:-308.733,-28.8989,0	0/1:267:133,133:133:4706:133:4741:-346.453,0,-343.308	1/1:42:1,41:1:36:41:1476:-129.538,-9.04499,0	1/1:131:0,131:0:0:131:4642:-417.933,-39.4349,0	1/1:160:0,160:0:0:160:5691:-512.307,-48.1648,0	0/1:145:70,75:70:2495:75:2680:-197.796,0,-181.153	0/1:248:111,137:111:3932:137:4912:-367.57,0,-279.418	0/1:165:119,46:119:4176:46:1643:-98.4426,0,-326.355	1/1:81:0,81:0:0:81:2881:-259.526,-24.3834,0	1/1:249:2,247:2:68:247:8838:-788.947,-68.4988,0
chr07	1082058	.	A	G	148687	PASS	AB=0.539511;ABP=74.5652;AC=136;AF=0.731183;AN=186;AO=7181;CIGAR=1X;DP=9617;DPB=9617;DPRA=0;EPP=15561.6;EPPR=5275.35;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.8123;MQMR=59.9753;NS=93;NUMALT=1;ODDS=0.0420163;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255424;QR=86475;RO=2432;RPL=7177;RPP=15561.6;RPPR=5275.35;RPR=4;RUN=1;SAF=7181;SAP=15596.4;SAR=0;SRF=2432;SRP=5284.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:8,19:8:288:19:652:-50.8633,0,-18.1396	0/1:128:44,83:44:1556:83:2980:-229.97,0,-101.868	0/1:86:35,51:35:1248:51:1794:-135.824,0,-86.7363	0/1:224:75,149:75:2652:149:5348:-414.018,0,-171.45	1/1:81:0,81:0:0:81:2879:-259.339,-24.3834,0	1/1:72:1,71:1:36:71:2524:-223.793,-18.0759,0	0/1:169:84,85:84:2988:85:3040:-222.91,0,-218.277	1/1:212:0,212:0:0:212:7550:-679.531,-63.8184,0	1/1:106:0,106:0:0:106:3763:-338.869,-31.9092,0	0/1:118:65,53:65:2332:53:1900:-135.756,0,-174.618	1/1:94:0,94:0:0:94:3349:-301.623,-28.2968,0	0/1:79:42,36:42:1487:36:1276:-91.2884,0,-110.284	0/1:78:40,38:40:1420:38:1346:-97.5299,0,-104.617	0/1:79:48,31:48:1716:31:1091:-74.7174,0,-130.944	1/1:83:0,83:0:0:83:2931:-263.998,-24.9855,0	0/1:66:36,30:36:1284:30:1064:-76.1851,0,-95.9954	0/1:89:38,51:38:1364:51:1790:-134.583,0,-96.269	0/1:69:34,35:34:1208:35:1236:-90.7732,0,-88.255	1/1:72:0,72:0:0:72:2576:-232.047,-21.6742,0	1/1:222:1,221:1:36:221:7886:-706.165,-63.2304,0	1/1:108:0,107:0:0:107:3795:-341.388,-32.2102,0	0/1:90:53,37:53:1849:37:1328:-92.7295,0,-139.595	0/1:119:52,67:52:1856:67:2376:-178.272,0,-131.497	0/1:115:48,67:48:1712:67:2385:-180.252,0,-119.747	0/1:71:23,48:23:812:48:1719:-133.622,0,-52.0278	1/1:275:1,274:1:36:274:9764:-875.094,-79.185,0	1/1:220:0,220:0:0:220:7825:-704.284,-66.2266,0	1/1:52:0,52:0:0:52:1860:-167.661,-15.6536,0	0/1:307:134,173:134:4780:173:6149:-460.59,0,-337.942	0/1:112:36,76:36:1257:76:2700:-209.525,0,-79.7149	1/1:174:0,174:0:0:174:6208:-558.172,-52.3792,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:205:106,99:106:3773:99:3497:-252.895,0,-278.058	0/1:190:100,90:100:3564:90:3217:-232.536,0,-263.774	0/1:85:46,39:46:1640:39:1383:-99.1805,0,-122.301	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:196:56,140:56:1968:140:4979:-389.251,0,-118.391	0/1:43:25,18:25:888:18:640:-44.985,0,-67.2947	0/1:134:44,90:44:1568:90:3195:-247.388,0,-101.074	0/1:79:44,35:44:1559:35:1243:-88.3917,0,-116.82	1/1:80:0,80:0:0:80:2802:-252.402,-24.0824,0	1/1:159:0,159:0:0:159:5640:-507.148,-47.8638,0	1/1:85:0,85:0:0:85:3036:-273.462,-25.5876,0	1/1:189:0,189:0:0:189:6741:-606.52,-56.8947,0	0/1:111:39,72:39:1380:72:2553:-196.335,0,-91.0844	0/1:152:74,78:74:2631:78:2796:-206.123,0,-191.281	0/1:154:68,86:68:2424:86:3068:-229.934,0,-172.058	1/1:9:0,9:0:0:9:309:-28.1407,-2.70927,0	1/1:135:0,135:0:0:135:4801:-432.246,-40.6391,0	0/1:79:30,49:30:1068:49:1749:-133.907,0,-72.5208	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:95:38,57:38:1356:57:2027:-154.076,0,-93.7426	0/1:45:22,23:22:788:23:813:-59.9436,0,-57.6984	0/1:3:1,2:1:36:2:72:-5.34699,0,-2.69518	1/1:3:0,3:0:0:3:104:-9.70243,-0.90309,0	1/1:119:0,119:0:0:119:4240:-381.085,-35.8226,0	1/1:139:1,138:1:36:138:4908:-438.085,-38.2449,0	.:.:.:.:.:.:.:.	0/1:193:99,94:99:3518:94:3367:-245.085,0,-258.729	1/1:181:0,181:0:0:181:6449:-580.417,-54.4864,0	0/1:62:23,39:23:820:39:1388:-105.189,0,-55.4587	1/1:168:0,168:0:0:168:5993:-539.433,-50.573,0	0/1:156:66,90:66:2356:90:3197:-240.834,0,-165.338	0/1:118:78,40:78:2768:40:1408:-91.4938,0,-213.841	0/1:45:20,25:20:712:25:884:-66.332,0,-50.8603	1/1:74:0,74:0:0:74:2616:-235.687,-22.2762,0	0/1:92:50,42:50:1780:42:1504:-107.959,0,-132.788	1/1:35:0,35:0:0:35:1233:-111.272,-10.5361,0	0/1:107:48,59:48:1683:59:2086:-155.799,0,-119.543	0/1:83:36,47:36:1276:47:1679:-126.411,0,-90.1576	1/1:159:0,159:0:0:159:5582:-502.463,-47.8638,0	0/1:117:38,78:38:1356:78:2783:-215.429,0,-87.0613	0/1:89:32,57:32:1144:57:2036:-156.72,0,-76.4778	1/1:98:0,98:0:0:98:3504:-315.571,-29.5009,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:102:0,102:0:0:102:3622:-326.184,-30.7051,0	1/1:85:0,85:0:0:85:3018:-271.849,-25.5876,0	1/1:148:0,148:0:0:148:5268:-474.252,-44.5524,0	0/1:108:56,52:56:2000:52:1864:-135.527,0,-147.726	0/1:61:34,27:34:1201:27:964:-68.7132,0,-90.0308	1/1:114:0,114:0:0:114:4059:-365.408,-34.3174,0	0/1:158:90,68:90:3196:68:2436:-171.926,0,-240.303	1/1:54:0,54:0:0:54:1920:-172.613,-16.2556,0	1/1:85:0,85:0:0:85:3007:-270.861,-25.5876,0	1/1:83:0,83:0:0:83:2939:-264.733,-24.9855,0	0/1:59:32,27:32:1144:27:960:-68.9555,0,-85.5087	0/1:146:75,71:75:2669:71:2525:-183.551,0,-196.504	0/1:78:56,22:56:2004:22:784:-47.402,0,-157.153	1/1:137:1,136:1:36:136:4836:-431.735,-37.6428,0	1/1:95:0,95:0:0:95:3368:-303.335,-28.5979,0
chr07	1082112	.	T	C	188241	PASS	AB=0.502026;ABP=3.23909;AC=136;AF=0.723404;AN=188;AO=8962;CIGAR=1X;DP=12171;DPB=12171;DPRA=0;EPP=19290.4;EPPR=6878.16;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.9868;MQMR=60;NS=94;NUMALT=1;ODDS=1.13745;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=320195;QR=114927;RO=3206;RPL=21;RPP=19281.8;RPPR=6886.8;RPR=8941;RUN=1;SAF=1;SAP=19455.1;SAR=8961;SRF=1;SRP=6956.07;SRR=3205;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:23,33:23:824:33:1184:-90.0106,0,-57.6256	0/1:191:92,99:92:3308:99:3539:-261.222,0,-240.441	0/1:212:111,101:111:3988:101:3611:-261.376,0,-295.29	0/1:371:194,177:194:6926:177:6301:-455.413,0,-511.723	1/1:129:0,129:0:0:129:4594:-413.624,-38.8329,0	1/1:84:0,84:0:0:84:3000:-270.231,-25.2865,0	0/1:196:88,108:88:3111:108:3842:-286.973,0,-221.212	1/1:234:0,234:0:0:234:8326:-749.347,-70.441,0	1/1:130:0,130:0:0:130:4638:-417.578,-39.1339,0	0/1:131:58,73:58:2084:73:2604:-195.161,0,-148.395	1/1:65:2,63:2:72:63:2243:-195.296,-12.7302,0	0/1:69:43,26:43:1544:26:921:-62.4341,0,-118.482	0/1:60:31,29:31:1116:29:1044:-76.213,0,-82.6899	0/1:55:30,25:30:1080:25:900:-64.7644,0,-80.9566	1/1:67:0,67:0:0:67:2408:-216.975,-20.169,0	0/1:42:27,15:27:972:15:536:-35.9316,0,-75.1546	0/1:67:45,22:45:1620:22:784:-50.6864,0,-125.921	0/1:58:29,29:29:1044:29:1044:-76.8151,0,-76.8151	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:383:3,380:3:108:380:13523:-1206.79,-105.219,0	1/1:268:0,268:0:0:268:9600:-863.951,-80.676,0	0/1:156:96,60:96:3440:60:2152:-146.987,0,-262.852	0/1:128:45,83:45:1616:83:2969:-228.909,0,-107.198	0/1:130:51,79:51:1832:79:2816:-214.544,0,-126.027	0/1:105:39,66:39:1385:66:2366:-181.59,0,-93.3387	1/1:446:1,445:1:36:445:15910:-1427.99,-130.661,0	1/1:242:0,242:0:0:242:8633:-776.958,-72.8493,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:365:161,204:161:5757:204:7305:-547.622,0,-408.369	0/1:110:49,61:49:1760:61:2181:-163.441,0,-125.571	1/1:256:0,256:0:0:256:9158:-824.19,-77.0637,0	1/1:20:1,19:1:36:19:684:-58.2921,-2.42233,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	1/1:13:0,13:0:0:13:445:-40.3754,-3.91339,0	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:193:100,93:100:3596:93:3294:-238.579,0,-265.746	0/1:193:103,90:103:3704:90:3221:-232.013,0,-275.462	0/1:61:44,17:44:1569:17:612:-37.0506,0,-123.137	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:213:104,109:104:3705:109:3903:-287.344,0,-269.532	0/1:32:22,10:22:777:10:360:-23.1113,0,-60.6174	0/1:215:109,106:109:3901:106:3777:-275.397,0,-286.56	0/1:77:39,38:39:1404:38:1364:-99.8814,0,-103.48	1/1:68:0,68:0:0:68:2423:-218.326,-20.47,0	1/1:108:0,108:0:0:108:3868:-348.315,-32.5112,0	1/1:274:0,274:0:0:274:9793:-881.315,-82.4822,0	1/1:272:0,272:0:0:272:9763:-878.611,-81.8802,0	0/1:143:88,55:88:3164:55:1962:-133.808,0,-241.936	0/1:178:85,93:85:3052:93:3316:-245.069,0,-221.325	0/1:179:102,76:102:3652:76:2732:-192.179,0,-274.941	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:193:0,193:0:0:193:6928:-623.584,-58.0988,0	0/1:41:26,15:26:932:15:527:-35.418,0,-71.8566	0/1:13:2,11:2:72:11:392:-31.7067,0,-2.92333	0/1:200:95,105:95:3416:105:3742:-276.772,0,-247.447	0/1:73:28,45:28:1004:45:1612:-123.395,0,-68.7007	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:77:0,77:0:0:77:2755:-248.191,-23.1793,0	1/1:97:0,97:0:0:97:3480:-313.41,-29.1999,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:275:115,160:115:4124:160:5712:-431.416,0,-288.56	1/1:224:3,221:3:108:221:7917:-702.477,-57.3556,0	0/1:65:34,31:34:1209:31:1116:-81.1847,0,-89.5472	1/1:125:0,125:0:0:125:4471:-402.559,-37.6288,0	0/1:326:161,165:161:5784:165:5907:-433.603,0,-422.536	0/1:138:79,59:79:2840:59:2116:-149.167,0,-214.295	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	1/1:104:1,103:1:36:103:3671:-326.993,-27.7088,0	0/1:83:44,38:44:1584:38:1353:-97.0242,0,-117.807	1/1:29:0,29:0:0:29:1020:-92.1094,-8.72987,0	0/1:150:72,78:72:2592:78:2794:-206.545,0,-188.374	0/1:90:43,47:43:1533:47:1669:-123.403,0,-111.168	1/1:206:0,206:0:0:206:7262:-653.628,-62.0122,0	0/1:256:121,135:121:4333:135:4856:-360.127,0,-313.08	0/1:154:79,75:79:2836:75:2661:-193.375,0,-209.119	1/1:113:0,113:0:0:113:4044:-364.148,-34.0164,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:185:2,183:2:72:183:6556:-583.282,-48.8538,0	1/1:215:0,215:0:0:215:7684:-691.592,-64.7215,0	1/1:376:0,376:0:0:376:13508:-1215.5,-113.187,0	0/1:137:66,71:66:2361:71:2541:-187.698,0,-171.505	0/1:59:30,29:30:1076:29:1040:-76.1536,0,-79.3921	1/1:92:0,92:0:0:92:3277:-295.149,-27.6948,0	0/1:158:74,84:74:2664:84:3012:-223.748,0,-192.442	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:83:0,83:0:0:83:2956:-266.273,-24.9855,0	1/1:62:0,62:0:0:62:2203:-198.534,-18.6639,0	0/1:30:11,19:11:396:19:680:-52.4983,0,-26.9518	0/1:62:35,27:35:1252:27:965:-68.5027,0,-94.3212	0/1:63:45,18:45:1620:18:648:-39.687,0,-127.125	1/1:186:0,185:0:0:185:6533:-587.693,-55.6906,0	1/1:97:0,97:0:0:97:3478:-313.229,-29.1999,0
chr07	1083277	.	C	A	22637.6	PASS	AB=0.470512;ABP=26.3181;AC=51;AF=0.274194;AN=186;AO=1459;CIGAR=1X;DP=5679;DPB=5679;DPRA=1.07651;EPP=3171.19;EPPR=9138.41;GTI=0;LEN=1;MEANALT=1.01818;MQM=43.8814;MQMR=59.7303;NS=93;NUMALT=1;ODDS=4.40051;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52070;QR=150094;RO=4219;RPL=1458;RPP=3162.51;RPPR=9138.41;RPR=1;RUN=1;SAF=1458;SAP=3162.51;SAR=1;SRF=4219;SRP=9164.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:17,13:17:612:13:468:-31.2044,0,-46.3615	0/1:29:12,17:12:432:17:597:-43.7247,0,-30.4846	0/1:44:24,20:24:864:20:716:-49.4746,0,-64.8257	0/1:137:75,62:75:2647:62:2224:-155.303,0,-196.018	0/0:24:22,2:22:792:2:72:0,-0.534804,-64.9158	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.417	0/1:49:19,30:19:680:30:1060:-79.7443,0,-46.7783	0/0:69:69,0:69:2476:0:0:0,-20.7711,-222.903	0/0:114:114,0:114:4042:0:0:0,-34.3174,-363.961	0/1:87:44,43:44:1576:43:1544:-108.883,0,-115.938	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.467	0/1:102:56,46:56:1955:46:1636:-111.298,0,-145.511	0/1:45:19,26:19:676:26:936:-68.25,0,-47.6164	0/1:45:25,20:25:892:20:716:-49.3039,0,-67.0518	0/0:51:51,0:51:1795:0:0:0,-15.3525,-161.828	0/1:86:39,47:39:1396:47:1680:-121.246,0,-99.7296	0/1:34:24,10:24:864:10:360:-21.4593,0,-67.8442	0/1:35:16,19:16:576:19:676:-48.7305,0,-41.5324	0/0:29:29,0:29:1008:0:0:0,-8.72987,-91.0281	0/0:88:88,0:88:3138:0:0:0,-26.4906,-282.596	0/0:155:155,0:155:5474:0:0:0,-46.6596,-492.151	0/1:71:30,41:30:1044:41:1468:-109.401,0,-72.8938	0/1:87:57,30:57:2039:30:1080:-69.5041,0,-157.589	0/1:49:33,16:33:1180:16:572:-35.4229,0,-91.7499	0/1:40:24,16:24:856:16:576:-38.4531,0,-65.3177	0/0:157:157,0:157:5572:0:0:0,-47.2617,-501.595	0/0:106:106,0:106:3773:0:0:0,-31.9092,-339.692	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.262	0/1:128:79,49:79:2802:49:1752:-116.077,0,-213.886	0/1:115:79,36:79:2823:36:1280:-78.0454,0,-219.681	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:266:0:0:0,-2.40824,-24.2636	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82226	0/1:182:94,88:94:3332:88:3143:-225.375,0,-245.282	0/1:74:46,28:46:1640:28:989:-65.1988,0,-125.612	0/1:45:16,29:16:572:29:1044:-75.975,0,-38.1605	0/1:5:2,3:2:72:3:108:-8.35367,0,-5.33157	0/1:64:36,28:36:1281:28:989:-68.2091,0,-96.0521	0/1:30:14,16:14:485:16:576:-42.0237,0,-34.9445	0/1:72:39,32:39:1395:32:1132:-78.4254,0,-104.116	0/1:35:19,16:19:676:16:576:-40.4448,0,-50.6304	0/0:56:56,0:56:1980:0:0:0,-16.8577,-178.472	0/0:96:96,0:96:3422:0:0:0,-28.8989,-308.17	0/0:44:44,0:44:1552:0:0:0,-13.2453,-139.877	0/0:119:118,1:118:4236:1:36:0,-32.2741,-377.867	0/1:17:11,6:11:387:6:216:-14.3993,0,-30.048	0/1:44:23,21:23:828:21:756:-53.7047,0,-61.5902	0/1:83:53,30:53:1886:30:1076:-71.3258,0,-145	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3132	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.69	0/1:60:22,38:22:792:38:1368:-104.263,0,-53.5439	0/1:9:5,4:5:180:4:144:-10.1693,0,-13.8394	0/1:70:37,33:37:1309:33:1188:-83.1452,0,-97.0359	0/1:37:20,17:20:720:17:612:-43.4476,0,-53.9448	0/1:5:2,3:2:72:3:108:-8.12802,0,-5.33157	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:72:72,0:72:2557:0:0:0,-21.6742,-230.376	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.239	0/1:3:1,2:1:36:2:72:-5.83909,0,-2.69518	0/1:124:65,59:65:2315:59:2108:-149.449,0,-171.254	0/0:115:115,0:115:4098:0:0:0,-34.6184,-368.984	0/1:63:44,19:44:1552:19:684:-41.56,0,-120.993	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.54	0/1:104:67,37:67:2412:37:1324:-85.9628,0,-186.026	0/1:61:21,40:21:752:40:1440:-109.043,0,-49.643	0/1:25:13,12:13:453:12:428:-29.97,0,-33.5723	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:33:17,16:17:591:16:576:-41.0975,0,-43.5813	0/0:23:23,0:23:802:0:0:0,-6.92369,-72.4951	0/1:59:28,31:28:1004:31:1104:-77.9144,0,-72.9085	0/1:31:14,17:14:489:17:593:-42.5507,0,-34.9988	0/0:138:138,0:138:4894:0:0:0,-41.5421,-440.41	0/1:86:44,42:44:1563:42:1481:-104.412,0,-115.036	0/1:31:23,8:23:828:8:279:-15.3345,0,-65.5076	0/0:58:57,1:57:2052:1:36:0,-13.979,-181.351	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.784	0/0:172:169,3:169:6010:3:108:0,-41.7953,-531.009	0/1:54:23,31:23:824:31:1087:-79.5302,0,-58.2277	0/1:61:29,32:29:1023:32:1128:-81.914,0,-74.0166	0/0:46:46,0:46:1589:0:0:0,-13.8474,-143.29	0/1:145:67,78:67:2376:78:2771:-201.792,0,-170.445	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.911	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.708	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.376	0/1:18:10,8:10:341:8:288:-19.9222,0,-25.5968	0/1:77:37,40:37:1304:40:1428:-102.897,0,-94.4762	0/1:66:19,47:19:684:47:1661:-127.965,0,-42.0223	0/0:77:77,0:77:2736:0:0:0,-23.1793,-246.48	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.825
chr07	1087158	.	C	T	13760.6	PASS	AB=0.473088;ABP=14.1137;AC=54;AF=0.287234;AN=188;AO=843;CIGAR=1X;DP=3093;DPB=3093;DPRA=1.06695;EPP=1781.82;EPPR=4604.22;GTI=1;LEN=1;MEANALT=1.01887;MQM=59.9976;MQMR=59.9933;NS=94;NUMALT=1;ODDS=0.842695;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30168;QR=80509;RO=2249;RPL=6;RPP=1781.82;RPPR=4604.22;RPR=837;RUN=1;SAF=843;SAP=1833.56;SAR=0;SRF=2249;SRP=4886.65;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/1:36:17,19:17:612:19:684:-51.0532,0,-44.5764	0/1:27:20,7:20:720:7:252:-14.9011,0,-57.001	0/1:51:21,30:21:756:30:1080:-82.1607,0,-53.0147	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:36:20,16:20:703:16:576:-41.3379,0,-52.7564	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:36:23,13:23:824:13:468:-31.6226,0,-63.6462	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:37:18,19:18:644:19:680:-50.3911,0,-47.1525	0/1:32:9,23:9:324:23:813:-63.8561,0,-19.8729	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:23:12,11:12:432:11:392:-28.6964,0,-32.2975	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.954	0/1:36:18,18:18:644:18:644:-47.4535,0,-47.4535	0/1:18:5,13:5:180:13:468:-37.0411,0,-11.1335	0/1:36:19,17:19:676:17:612:-44.5764,0,-50.3309	0/1:39:23,16:23:824:16:566:-39.53,0,-62.7431	0/0:147:147,0:147:5249:0:0:0,-44.2514,-472.547	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:50:27,23:27:972:23:809:-58.0768,0,-72.7464	0/1:49:23,26:23:819:26:936:-69.809,0,-59.2811	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:83:43,40:43:1544:40:1440:-104.912,0,-114.268	0/1:48:33,15:33:1180:15:520:-32.6762,0,-92.0586	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:40:24,16:24:864:16:572:-39.7722,0,-66.0414	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/1:47:28,19:28:984:19:672:-46.6579,0,-74.7222	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:56:40,16:40:1440:16:576:-35.3173,0,-113.04	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	0/1:68:37,31:37:1332:31:1109:-79.651,0,-99.7123	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:54:54,0:54:1920:0:0:0,-16.2556,-173.074	0/1:22:9,13:9:316:13:468:-35.837,0,-22.1562	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:48:29,19:29:1044:19:680:-47.0797,0,-79.8254	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:70:37,33:37:1313:33:1184:-85.7962,0,-97.3976	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:53:36,17:36:1287:17:612:-39.4588,0,-100.178	0/1:65:19,46:19:676:46:1641:-128.41,0,-41.601	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:53:24,28:24:860:28:1008:-75.023,0,-61.7085	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:56:30,26:30:1057:26:936:-67.7018,0,-78.5813	0/1:16:6,10:6:212:10:356:-27.5648,0,-14.6083	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/1:43:22,21:22:788:21:756:-55.4229,0,-58.3005	0/1:31:9,22:9:324:22:767:-60.0175,0,-20.1739	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:21:20,1:20:720:1:36:0,-2.72335,-61.5305	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:67:35,32:35:1256:32:1143:-83.0097,0,-93.1763	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/1:43:25,18:25:900:18:644:-45.3454,0,-68.3767	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:23:16,7:16:572:7:252:-16.1053,0,-44.8897	0/1:50:29,21:29:1044:21:756:-53.3157,0,-79.2233	0/1:35:12,23:12:432:23:820:-63.5865,0,-28.6851	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968
chr07	1126792	.	A	G	35342.1	PASS	AB=0.497909;ABP=3.17377;AC=52;AF=0.276596;AN=188;AO=2149;CIGAR=1X;DP=7809;DPB=7809;DPRA=1.06968;EPP=4669.5;EPPR=12278.3;GTI=1;LEN=1;MEANALT=1.05357;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=0.502567;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76019;QR=201280;RO=5657;RPL=2149;RPP=4669.5;RPPR=12278.3;RPR=0;RUN=1;SAF=2149;SAP=4669.5;SAR=0;SRF=5657;SRP=12287;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:7,15:7:252:15:531:-41.4992,0,-16.4063	0/1:92:52,40:52:1852:40:1415:-99.9518,0,-139.265	0/1:87:43,44:43:1536:44:1541:-112.79,0,-112.343	0/1:141:87,53:87:3104:53:1879:-126.884,0,-237.084	0/0:64:64,0:64:2266:0:0:0,-19.2659,-204.202	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:127:75,52:75:2678:52:1835:-127.199,0,-203.033	0/0:126:126,0:126:4495:0:0:0,-37.9298,-404.72	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/1:75:38,37:38:1330:37:1314:-95.9846,0,-97.421	0/0:68:68,0:68:2415:0:0:0,-20.47,-217.606	0/1:69:34,35:34:1208:35:1227:-89.962,0,-88.255	0/1:75:30,45:30:1068:45:1592:-120.993,0,-73.8548	0/1:81:40,41:40:1424:41:1446:-106.051,0,-104.074	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/1:53:25,28:25:892:28:1008:-75.0818,0,-64.6451	0/1:66:35,31:35:1218:31:1108:-80.163,0,-90.0539	0/1:72:32,40:32:1144:40:1411:-105.612,0,-81.5954	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/0:162:161,1:161:5753:1:27:0,-46.0671,-515.185	0/0:116:116,0:116:4126:0:0:0,-34.9195,-371.526	0/1:94:41,53:41:1476:53:1844:-137.939,0,-104.839	0/1:46:17,29:17:594:29:1032:-79.3461,0,-39.9382	0/1:61:38,23:38:1364:23:815:-55.3079,0,-104.698	0/1:47:24,23:24:856:23:816:-59.6133,0,-63.2127	0/0:251:251,0:251:8936:0:0:0,-75.5585,-804.227	0/0:232:232,0:232:8225:0:0:0,-69.839,-740.269	0/0:32:32,0:32:1127:0:0:0,-9.63296,-101.737	0/1:194:101,93:101:3587:93:3306:-239.359,0,-264.639	0/1:182:98,84:98:3480:84:3003:-215.714,0,-258.624	0/0:120:120,0:120:4266:0:0:0,-36.1236,-384.12	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:15:7,8:7:243:8:288:-21.752,0,-17.692	0/1:175:88,87:88:3122:87:3069:-223.76,0,-228.527	0/1:183:101,82:101:3620:82:2925:-208.395,0,-270.917	0/1:81:35,46:35:1236:46:1627:-122.335,0,-87.1608	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:97:55,42:55:1971:42:1500:-106.095,0,-148.464	0/1:40:19,21:19:675:21:722:-53.2563,0,-49.0358	0/1:85:31,54:31:1099:54:1877:-143.617,0,-73.6319	0/1:59:27,32:27:955:32:1140:-85.1484,0,-68.5041	0/0:52:52,0:52:1850:0:0:0,-15.6536,-166.779	0/0:69:69,0:69:2451:0:0:0,-20.7711,-220.845	0/0:92:92,0:92:3256:0:0:0,-27.6948,-293.261	0/0:129:129,0:129:4587:0:0:0,-38.8329,-412.998	0/1:105:51,54:51:1824:54:1910:-140.568,0,-132.833	0/1:98:53,45:53:1892:45:1586:-113.528,0,-141.057	0/1:174:66,108:66:2351:108:3827:-292.248,0,-159.469	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:132:132,0:132:4689:0:0:0,-39.736,-422.173	0/1:57:38,19:38:1326:19:669:-43.3752,0,-102.479	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/1:92:54,38:54:1936:38:1351:-94.1948,0,-146.822	0/1:26:11,15:11:392:15:527:-39.9334,0,-27.7933	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:90:90,0:90:3192:0:0:0,-27.0927,-287.503	0/0:135:135,0:135:4827:0:0:0,-40.639,-434.585	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:170:76,93:76:2694:93:3290:-245.213,0,-191.599	0/0:202:202,0:202:7187:0:0:0,-60.8081,-646.891	0/1:60:34,26:34:1176:26:932:-66.1371,0,-88.0796	0/0:88:87,1:87:3116:1:36:0,-22.8924,-277.068	0/1:130:72,58:72:2567:58:2069:-147.346,0,-192.146	0/1:123:48,75:48:1703:75:2660:-202.618,0,-116.529	0/1:26:15,11:15:528:11:384:-27.0679,0,-40.0246	0/0:60:60,0:60:2116:0:0:0,-18.0618,-190.707	0/1:90:48,42:48:1698:42:1475:-105.949,0,-126.012	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/1:98:56,42:56:2000:42:1489:-104.804,0,-150.773	0/1:49:18,31:18:635:31:1094:-84.0178,0,-42.7265	0/0:133:133,0:133:4728:0:0:0,-40.037,-425.68	0/1:99:54,45:54:1923:45:1599:-114.397,0,-143.544	0/1:78:36,42:36:1271:42:1483:-110.283,0,-91.2118	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:78:77,1:77:2734:1:36:0,-19.8821,-242.704	0/0:84:84,0:84:2986:0:0:0,-25.2865,-268.972	0/0:208:208,0:208:7431:0:0:0,-62.6142,-668.837	0/1:102:41,61:41:1464:61:2168:-164.682,0,-101.351	0/1:62:37,25:37:1311:25:884:-61.2145,0,-99.627	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/1:116:62,54:62:2211:54:1907:-136.988,0,-164.335	0/0:39:38,1:38:1343:1:32:0,-8.54086,-117.97	0/0:77:77,0:77:2736:0:0:0,-23.1793,-246.481	0/0:83:83,0:83:2942:0:0:0,-24.9855,-265.015	0/1:58:23,35:23:815:35:1228:-93.3613,0,-56.211	0/1:105:60,45:60:2156:45:1574:-110.341,0,-162.699	0/1:58:19,39:19:667:39:1371:-106.228,0,-42.8949	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.835	0/0:106:104,1:104:3723:1:36:0,-28.3697,-331.672
chr07	1129744	.	A	T	197712	PASS	AB=0.490862;ABP=8.64551;AC=136;AF=0.723404;AN=188;AO=9612;CIGAR=1X;DP=13583;DPB=13583;DPRA=0;EPP=20875.2;EPPR=8595.53;GTI=1;LEN=1;MEANALT=1.11702;MQM=59.9632;MQMR=59.9881;NS=94;NUMALT=1;ODDS=0.903536;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=343160;QR=141816;RO=3957;RPL=9612;RPP=20875.2;RPPR=8595.53;RPR=0;RUN=1;SAF=0;SAP=20875.2;SAR=9612;SRF=0;SRP=8595.53;SRR=3957;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:17,18:17:608:18:644:-47.7545,0,-44.516	0/1:217:98,119:98:3520:119:4264:-318.615,0,-251.685	0/1:260:138,122:138:4951:122:4284:-307.471,0,-367.47	0/1:330:128,202:128:4554:202:7220:-550.514,0,-310.688	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:54:0,54:0:0:54:1913:-172.442,-16.2556,0	0/1:187:98,88:98:3520:88:3152:-227.554,0,-260.657	1/1:224:0,224:0:0:224:7994:-719.471,-67.4307,0	1/1:64:0,64:0:0:64:2281:-205.547,-19.2659,0	0/1:97:47,50:47:1688:50:1765:-129.931,0,-123.007	1/1:135:0,135:0:0:135:4829:-434.763,-40.6391,0	0/1:103:49,54:49:1747:54:1944:-144.23,0,-126.507	0/1:116:45,70:45:1607:70:2520:-192.073,0,-109.941	0/1:187:94,93:94:3367:93:3328:-243.441,0,-246.948	1/1:109:1,108:1:36:108:3868:-344.717,-29.214,0	0/1:96:38,58:38:1351:58:2080:-158.571,0,-92.9907	0/1:138:72,66:72:2584:66:2338:-169.134,0,-191.267	0/1:106:54,52:54:1944:52:1864:-136.13,0,-143.327	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:327:0,327:0:0:327:11614:-1045.07,-98.4368,0	1/1:110:0,110:0:0:110:3935:-354.343,-33.1133,0	0/1:145:103,41:103:3688:41:1456:-87.6279,0,-288.415	0/1:34:19,15:19:676:15:540:-38.7015,0,-50.933	0/1:149:78,71:78:2808:71:2544:-184.357,0,-208.105	0/1:73:31,42:31:1108:42:1508:-114.039,0,-78.0558	1/1:441:2,439:2:72:439:15672:-1403.34,-125.918,0	1/1:302:0,302:0:0:302:10804:-972.26,-90.9111,0	1/1:66:1,65:1:36:65:2325:-205.911,-16.2697,0	0/1:411:208,203:208:7456:203:7267:-530.359,0,-547.36	0/1:202:112,90:112:4028:90:3213:-228.583,0,-301.898	1/1:141:0,141:0:0:141:5037:-453.475,-42.4452,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:15:11,4:11:396:4:140:-8.42913,0,-31.4673	0/1:243:112,131:112:4015:131:4681:-348.298,0,-288.387	0/1:310:150,160:150:5367:160:5680:-417.994,0,-389.842	0/1:117:58,59:58:2084:59:2112:-155.127,0,-152.61	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:293:143,149:143:5140:149:5340:-392.468,0,-374.479	0/1:81:35,46:35:1260:46:1652:-124.585,0,-89.3221	0/1:137:66,71:66:2351:71:2510:-184.909,0,-170.608	0/1:94:56,38:56:2012:38:1360:-94.4038,0,-153.056	1/1:81:0,81:0:0:81:2879:-259.347,-24.3834,0	1/1:97:0,97:0:0:97:3472:-312.692,-29.1999,0	1/1:144:0,144:0:0:144:5120:-460.915,-43.3483,0	1/1:229:0,228:0:0:228:8122:-730.638,-68.6348,0	0/1:97:56,41:56:2000:41:1463:-102.766,0,-151.074	0/1:482:224,258:224:8023:258:9188:-681.794,0,-576.366	0/1:227:113,112:113:4052:112:4014:-293.357,0,-296.775	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:490:0,490:0:0:490:17472:-1572.1,-147.505,0	0/1:64:37,27:37:1332:27:972:-68.532,0,-100.916	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:154:76,78:76:2716:78:2777:-203.811,0,-198.325	0/1:44:26,18:26:932:18:648:-45.4066,0,-70.9535	0/1:10:4,6:4:144:6:201:-15.4067,0,-10.3033	1/1:22:0,22:0:0:22:789:-71.3351,-6.62266,0	1/1:116:0,116:0:0:116:4117:-370.715,-34.9195,0	1/1:217:1,216:1:36:216:7768:-695.462,-61.7252,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:306:182,124:182:6528:124:4406:-304.597,0,-495.486	1/1:297:0,297:0:0:297:10593:-952.796,-89.4059,0	0/1:134:61,71:61:2180:71:2520:-186.957,0,-156.371	1/1:88:1,87:1:36:87:3124:-277.787,-22.8924,0	0/1:187:83,104:83:2984:104:3716:-278.35,0,-212.499	0/1:198:145,53:145:5200:53:1867:-108.703,0,-408.534	0/1:55:31,24:31:1112:24:860:-61.1619,0,-83.8347	1/1:123:0,122:0:0:122:4368:-392.974,-36.7257,0	0/1:137:68,69:68:2436:69:2468:-181.133,0,-178.254	1/1:30:0,30:0:0:30:1061:-95.7994,-9.0309,0	0/1:133:65,68:65:2324:68:2440:-179.818,0,-169.38	0/1:77:41,36:41:1472:36:1288:-93.0443,0,-109.597	1/1:219:0,219:0:0:219:7796:-701.674,-65.9256,0	0/1:299:156,143:156:5589:143:5093:-368.505,0,-413.122	0/1:230:114,116:114:4084:116:4134:-303.005,0,-298.509	1/1:230:3,227:3:108:227:8124:-721.096,-59.1617,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:185:0,184:0:0:184:6574:-591.379,-55.3895,0	1/1:210:3,207:3:108:207:7398:-655.78,-53.1411,0	1/1:268:0,268:0:0:268:9521:-856.324,-80.676,0	0/1:125:68,55:68:2448:55:1972:-140.368,0,-183.188	0/1:99:42,57:42:1512:57:2051:-155.06,0,-106.573	1/1:106:0,106:0:0:106:3777:-340.129,-31.9092,0	0/1:167:77,90:77:2752:90:3232:-240.829,0,-197.65	1/1:34:0,34:0:0:34:1224:-109.102,-10.235,0	1/1:96:0,96:0:0:96:3433:-309.182,-28.8989,0	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0	0/1:136:71,64:71:2548:64:2304:-166.621,0,-188.571	0/1:135:77,58:77:2759:58:2072:-146.112,0,-207.911	0/1:82:57,25:57:2035:25:900:-56.6366,0,-158.737	1/1:185:0,185:0:0:185:6620:-595.88,-55.6906,0	1/1:105:0,105:0:0:105:3760:-338.595,-31.6082,0
chr07	1134141	.	ACTAT	ACTAC	113237	PASS	AB=0.54815;ABP=82.4732;AC=135;AF=0.725806;AN=186;AO=5453;CIGAR=4M1X;DP=7257;DPB=7258.8;DPRA=19.7092;EPP=11844;EPPR=3844.34;GTI=2;LEN=1;MEANALT=1.34783;MQM=59.8469;MQMR=59.978;NS=93;NUMALT=1;ODDS=2.6192;PAIRED=0;PAIREDR=0;PAO=4.5;PQA=158;PQR=0;PRO=0;QA=194500;QR=61468;RO=1769;RPL=0;RPP=11844;RPPR=3844.34;RPR=5453;RUN=1;SAF=0;SAP=11844;SAR=5453;SRF=0;SRP=3844.34;SRR=1769;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:12,44:12:410:44:1567:-124.45,0,-20.3691	0/1:43:19,24:19:656:24:860:-64.7775,0,-46.4177	0/1:145:65,80:65:2250:80:2861:-214.074,0,-159.115	0/1:155:87,68:87:3003:68:2413:-170.762,0,-223.848	1/1:65:1,63:1:36:63:2268:-200.755,-16.0576,0	1/1:31:0,31:0:0:31:1107:-99.9326,-9.33193,0	0/1:55:18,34:18:617:34:1205:-92.7654,0,-39.864	1/1:109:0,108:0:0:108:3841:-345.515,-32.5112,0	1/1:108:0,107:0:0:107:3814:-343.071,-32.2102,0	0/1:42:19,22:19:673:22:784:-58.182,0,-48.1957	1/1:24:0,24:0:0:24:858:-77.5416,-7.22472,0	0/1:88:42,45:42:1445:45:1612:-118.849,0,-103.835	0/1:67:42,25:42:1474:25:900:-61.152,0,-112.787	0/1:38:19,19:19:632:19:661:-48.3725,0,-45.7543	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	0/1:51:28,23:28:980:23:828:-59.4916,0,-73.1599	0/1:23:13,10:13:449:10:360:-25.8197,0,-33.8153	0/1:27:19,8:19:669:8:284:-17.7755,0,-52.4084	1/1:18:0,18:0:0:18:644:-58.2888,-5.41854,0	1/1:160:0,160:0:0:160:5703:-513.366,-48.1648,0	1/1:177:0,177:0:0:177:6317:-567.465,-53.2823,0	0/1:84:61,23:61:2123:23:819:-48.745,0,-166.053	0/1:97:41,55:41:1400:55:1980:-149.216,0,-97.0343	0/1:57:18,38:18:635:38:1364:-105.899,0,-40.3156	0/1:69:19,50:19:665:50:1796:-141.151,0,-39.4038	1/1:192:0,190:0:0:190:6752:-607.48,-57.1957,0	1/1:190:0,190:0:0:190:6789:-611.079,-57.1957,0	1/1:27:0,26:0:0:26:936:-84.1996,-7.82678,0	0/1:186:72,114:72:2532:114:4072:-310.67,0,-172.142	0/1:129:46,83:46:1595:83:2958:-227.604,0,-105.004	1/1:133:0,133:0:0:133:4735:-426.169,-40.037,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:3:0,3:0:0:3:108:-10.0742,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:153:78,74:78:2704:74:2656:-193.282,0,-197.609	0/1:90:31,59:31:1092:59:2116:-163.616,0,-71.4959	0/1:38:27,11:27:923:11:392:-24.1809,0,-71.9409	0/0:4:4,0:4:143:0:0:0,-1.20412,-13.2214	0/1:112:52,59:52:1784:59:2116:-156.935,0,-127.067	0/1:37:10,26:10:354:26:928:-72.6477,0,-21.0129	0/1:151:59,91:59:2052:91:3245:-246.776,0,-139.456	0/1:47:32,15:32:1114:15:532:-34.0647,0,-86.4203	1/1:45:0,45:0:0:45:1601:-144.378,-13.5464,0	1/1:80:0,80:0:0:80:2865:-258.063,-24.0824,0	1/1:102:0,102:0:0:102:3599:-324.043,-30.7051,0	1/1:177:0,177:0:0:177:6311:-568.075,-53.2823,0	0/1:97:35,61:35:1221:61:2196:-168.715,0,-81.0035	0/1:69:29,40:29:1016:40:1417:-106.726,0,-70.9807	0/1:166:53,112:53:1810:112:3994:-309.591,0,-113.15	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:132:0,132:0:0:132:4736:-426.211,-39.736,0	0/1:43:13,30:13:459:30:1067:-83.3969,0,-28.701	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:104:38,64:38:1313:64:2292:-175.51,0,-87.4381	0/1:45:9,36:9:312:36:1292:-103.037,0,-14.8684	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:70:0,70:0:0:70:2493:-224.565,-21.0721,0	1/1:112:0,112:0:0:112:4005:-360.639,-33.7154,0	0/1:3:2,1:2:67:1:36:-2.69518,0,-5.45975	0/1:166:76,88:76:2642:88:3121:-231.461,0,-188.374	1/1:180:3,177:3:107:177:6294:-556.462,-44.2434,0	0/1:45:14,30:14:486:30:1080:-83.9066,0,-30.4638	1/1:88:0,88:0:0:88:3133:-282.038,-26.4906,0	0/1:121:49,70:49:1693:70:2497:-188.872,0,-116.546	0/1:96:48,48:48:1682:48:1705:-124.821,0,-122.767	0/1:28:15,12:15:525:12:432:-30.8719,0,-39.2332	1/1:54:0,54:0:0:54:1932:-174.153,-16.2556,0	0/1:44:24,20:24:834:20:703:-50.3482,0,-62.084	1/1:14:0,14:0:0:14:488:-44.2397,-4.21442,0	0/1:149:46,103:46:1600:103:3679:-286.452,0,-99.4361	0/1:87:42,45:42:1462:45:1594:-117.467,0,-105.684	1/1:135:1,134:1:31:134:4780:-427.256,-37.5396,0	0/1:176:96,79:96:3325:79:2815:-200.696,0,-246.586	0/1:83:41,42:41:1440:42:1508:-111.019,0,-104.91	1/1:75:0,72:0:0:72:2567:-231.002,-21.6742,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:83:0,83:0:0:83:2973:-267.795,-24.9855,0	1/1:59:0,58:0:0:58:2069:-186.11,-17.4597,0	1/1:233:0,233:0:0:233:8307:-747.639,-70.14,0	0/1:50:29,20:29:1016:20:697:-47.976,0,-76.6843	0/1:59:25,34:25:873:34:1220:-92.346,0,-61.1264	1/1:34:0,33:0:0:33:1180:-106.206,-9.93399,0	0/1:117:54,63:54:1889:63:2241:-166.732,0,-135.061	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:62:0,62:0:0:62:2181:-196.386,-18.6639,0	1/1:62:0,62:0:0:62:2199:-198.148,-18.6639,0	0/1:22:9,13:9:315:13:464:-35.4748,0,-22.0658	0/1:70:41,29:41:1424:29:1032:-72.1214,0,-107.383	0/1:59:42,17:42:1480:17:612:-37.6527,0,-115.735	1/1:107:0,106:0:0:106:3790:-340.747,-31.9092,0	1/1:57:0,57:0:0:57:2017:-181.801,-17.1587,0
chr07	1158232	.	C	T	42440.9	PASS	AB=0.512572;ABP=9.67151;AC=52;AF=0.27957;AN=186;AO=2493;CIGAR=1X;DP=8747;DPB=8747;DPRA=1.07358;EPP=5416.49;EPPR=13572.5;GTI=1;LEN=1;MEANALT=1.07273;MQM=59.6619;MQMR=59.9013;NS=93;NUMALT=1;ODDS=2.7618;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89234;QR=223700;RO=6249;RPL=0;RPP=5416.49;RPPR=13572.5;RPR=2493;RUN=1;SAF=2493;SAP=5416.49;SAR=0;SRF=6249;SRP=13572.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:170:79,91:79:2844:91:3264:-242.758,0,-205.021	0/1:113:56,57:56:2004:57:2026:-148.481,0,-146.617	0/1:144:70,74:70:2500:74:2648:-195.213,0,-181.903	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.655	0/1:178:90,88:90:3201:88:3144:-229.598,0,-234.728	0/0:132:132,0:132:4724:0:0:0,-39.736,-424.763	0/0:150:150,0:150:5356:0:0:0,-45.1545,-482.171	0/1:95:55,40:55:1964:40:1428:-100.214,0,-148.437	0/0:69:67,2:67:2396:2:72:0,-13.9343,-209.058	0/1:96:41,55:41:1468:55:1966:-148.295,0,-103.517	0/1:101:49,52:49:1724:52:1868:-137.839,0,-125.038	0/1:78:43,35:43:1536:35:1237:-88.152,0,-115.045	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/1:90:32,58:32:1152:58:2076:-159.995,0,-76.8974	0/1:81:46,35:46:1652:35:1252:-88.5817,0,-124.479	0/1:95:46,49:46:1652:49:1756:-129.675,0,-120.371	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.474	0/0:204:204,0:204:7269:0:0:0,-61.4101,-654.265	0/0:163:163,0:163:5828:0:0:0,-49.0679,-524.588	0/1:45:14,31:14:504:31:1112:-86.845,0,-32.1517	0/1:61:32,29:32:1148:29:1044:-75.8977,0,-85.267	0/1:53:33,20:33:1184:20:708:-48.091,0,-90.9137	0/1:89:51,38:51:1832:38:1358:-95.7205,0,-138.369	0/0:289:289,0:289:10372:0:0:0,-86.9977,-933.385	0/0:208:207,1:207:7412:1:36:0,-59.016,-663.519	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:185:89,95:89:3176:95:3408:-251.32,0,-230.436	0/1:88:42,46:42:1508:46:1644:-121.75,0,-109.524	0/0:113:113,0:113:4044:0:0:0,-34.0164,-363.435	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.759	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:284:129,155:129:4608:155:5552:-414.214,0,-328.725	0/1:137:66,71:66:2353:71:2528:-186.495,0,-170.786	0/1:83:41,42:41:1468:42:1500:-110.247,0,-107.431	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:75:37,38:37:1324:38:1349:-99.1229,0,-96.8848	0/1:47:22,25:22:788:25:896:-66.8119,0,-57.0964	0/1:91:52,39:52:1860:39:1404:-98.7585,0,-140.286	0/1:98:51,47:51:1824:47:1680:-121.986,0,-134.94	0/0:89:88,1:88:3164:1:36:0,-23.1934,-281.385	0/0:152:152,0:152:5460:0:0:0,-45.7566,-491.494	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.725	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.029	0/1:115:63,52:63:2256:52:1856:-132.688,0,-168.684	0/1:175:77,97:77:2752:97:3476:-260.34,0,-195.222	0/1:91:55,36:55:1976:36:1284:-88.4697,0,-150.721	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:81:80,0:80:2856:0:0:0,-24.0824,-256.804	0/1:28:21,7:21:756:7:252:-14.5977,0,-59.9384	0/1:9:5,4:5:172:4:144:-10.6043,0,-13.1087	0/1:97:45,52:45:1612:52:1868:-139.178,0,-116.17	0/1:48:24,24:24:856:24:856:-62.9071,0,-62.9117	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:103:102,1:102:3660:1:36:0,-27.4078,-326.005	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:82:52,30:52:1849:30:1072:-72.108,0,-142.004	0/0:203:203,0:203:7241:0:0:0,-61.1091,-651.678	0/1:103:50,53:50:1796:53:1896:-139.901,0,-130.916	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:132:63,69:63:2260:69:2468:-182.485,0,-163.927	0/1:90:41,49:41:1464:49:1745:-130.24,0,-104.963	0/1:45:18,27:18:640:27:972:-74.2516,0,-44.383	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.666	0/1:106:54,52:54:1936:52:1856:-135.404,0,-142.606	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:85:51,34:51:1824:34:1216:-84.159,0,-138.854	0/1:82:40,42:40:1436:42:1512:-111.689,0,-104.804	0/0:211:211,0:211:7560:0:0:0,-63.5173,-680.383	0/1:141:65,75:65:2328:75:2696:-200.168,0,-167.313	0/1:85:26,59:26:928:59:2124:-165.823,0,-58.2507	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.673	0/0:96:96,0:96:3435:0:0:0,-28.8989,-309.359	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.518	0/1:128:69,59:69:2468:59:2112:-151.804,0,-183.84	0/1:81:37,44:37:1332:44:1576:-117.746,0,-95.7908	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.375	0/1:192:98,94:98:3524:94:3380:-246.407,0,-259.57	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.711	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.424	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:45:25,20:25:888:20:712:-50.8521,0,-66.6927	0/1:102:45,57:45:1616:57:2048:-153.854,0,-115.023	0/1:190:62,127:62:2232:127:4549:-352.428,0,-144.037	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:154:154,0:154:5528:0:0:0,-46.3586,-497.643
chr07	1158881	.	A	T	150239	PASS	AB=0.484519;ABP=14.3055;AC=134;AF=0.72043;AN=186;AO=7209;CIGAR=1X;DP=10016;DPB=10016;DPRA=0;EPP=15657.2;EPPR=6093.99;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.9329;MQMR=58.298;NS=93;NUMALT=1;ODDS=1.55492;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258321;QR=100594;RO=2805;RPL=0;RPP=15657.2;RPPR=6093.99;RPR=7209;RUN=1;SAF=7209;SAP=15657.2;SAR=0;SRF=2805;SRP=6093.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:41,34:41:1468:34:1220:-87.518,0,-109.766	0/1:70:27,43:27:972:43:1540:-117.821,0,-66.7161	0/1:119:51,68:51:1828:68:2441:-184.122,0,-128.973	0/1:239:111,128:111:3988:128:4596:-341.857,0,-285.997	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:85:44,41:44:1580:41:1459:-106.017,0,-116.78	1/1:144:0,144:0:0:144:5141:-462.764,-43.3483,0	1/1:163:0,163:0:0:163:5831:-524.897,-49.0679,0	0/1:90:49,41:49:1756:41:1472:-105.683,0,-131.044	1/1:45:0,45:0:0:45:1602:-144.469,-13.5464,0	0/1:108:40,68:40:1440:68:2420:-185.499,0,-97.2947	0/1:105:48,57:48:1724:57:2048:-152.965,0,-123.743	0/1:79:41,38:41:1468:38:1345:-97.5668,0,-108.609	1/1:76:0,76:0:0:76:2736:-246.482,-22.8783,0	0/1:72:40,32:40:1440:32:1152:-82.316,0,-108.061	0/1:35:21,14:21:752:14:504:-35.162,0,-57.4145	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2744	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:160:0,160:0:0:160:5722:-515.077,-48.1648,0	1/1:164:1,163:1:36:163:5822:-520.497,-45.7711,0	0/1:148:107,41:107:3848:41:1472:-88.2237,0,-301.844	0/1:172:81,91:81:2897:91:3257:-241.572,0,-209.006	0/1:51:32,18:32:1152:18:644:-42.8841,0,-88.5716	0/1:118:74,44:74:2660:44:1571:-106.159,0,-203.988	1/1:304:0,304:0:0:304:10910:-981.738,-91.5131,0	1/1:277:0,277:0:0:277:9942:-894.681,-83.3853,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:366:166,200:166:5968:200:7179:-535.981,0,-426.18	0/1:180:87,93:87:3117:93:3332:-245.912,0,-226.474	1/1:135:0,135:0:0:135:4829:-434.76,-40.6391,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:192:110,82:110:3948:82:2943:-207.305,0,-296.546	0/1:106:40,66:40:1421:66:2360:-180.749,0,-96.1742	0/1:39:18,21:18:648:21:756:-56.6271,0,-46.8417	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69474	0/1:137:76,61:76:2728:61:2177:-154.953,0,-203.642	0/1:19:9,10:9:320:10:360:-27.0247,0,-23.3744	0/1:205:108,97:108:3880:97:3488:-252.395,0,-287.35	0/1:46:22,24:22:788:24:864:-64.2352,0,-57.383	1/1:70:0,70:0:0:70:2501:-225.341,-21.0721,0	1/1:182:0,182:0:0:182:6532:-587.928,-54.7875,0	1/1:164:3,161:3:108:161:5752:-506.358,-39.2938,0	1/1:269:0,269:0:0:269:9639:-867.448,-80.9771,0	0/1:161:85,76:85:3048:76:2716:-196.218,0,-225.906	0/1:142:72,70:72:2558:70:2497:-182.235,0,-185.559	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.193	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:91:0,91:0:0:91:3251:-292.811,-27.3937,0	0/1:77:36,41:36:1292:41:1460:-108.512,0,-93.3363	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:132:69,63:69:2461:63:2264:-164.286,0,-181.854	0/1:77:44,33:44:1580:33:1184:-83.689,0,-119.128	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5064	1/1:21:0,21:0:0:21:756:-68.3388,-6.32163,0	1/1:115:0,115:0:0:115:4097:-368.887,-34.6185,0	1/1:103:1,102:1:36:102:3664:-326.365,-27.4083,0	0/1:21:16,5:16:576:5:180:-10.2304,0,-45.8469	0/1:313:176,137:176:6297:137:4909:-347.734,0,-472.189	1/1:274:0,274:0:0:274:9820:-883.737,-82.4822,0	0/1:69:36,33:36:1277:33:1184:-86.0972,0,-94.3625	1/1:128:0,128:0:0:128:4585:-412.813,-38.5318,0	0/1:226:114,112:114:4100:112:4008:-292.32,0,-300.93	0/1:108:76,32:76:2701:32:1152:-71.4789,0,-210.74	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4878	1/1:73:0,73:0:0:73:2624:-236.371,-21.9752,0	0/1:48:24,24:24:864:24:864:-63.6331,0,-63.6104	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:105:57,48:57:2052:48:1724:-123.828,0,-153.251	0/1:153:72,81:72:2584:81:2908:-215.897,0,-186.687	1/1:168:0,168:0:0:168:6031:-542.872,-50.573,0	0/1:139:79,60:79:2829:60:2156:-152.463,0,-212.801	0/1:142:73,69:73:2612:69:2480:-180.707,0,-192.567	1/1:66:4,62:4:144:62:2207:-185.582,-6.55529,0	1/1:21:0,21:0:0:21:752:-68.0044,-6.32163,0	1/1:83:0,83:0:0:83:2952:-265.912,-24.9855,0	1/1:155:0,155:0:0:155:5557:-500.212,-46.6597,0	1/1:299:0,299:0:0:299:10709:-963.713,-90.008,0	0/1:63:30,33:30:1076:33:1184:-87.9034,0,-78.0089	0/1:88:45,43:45:1620:43:1544:-112.762,0,-119.529	1/1:55:0,55:0:0:55:1972:-177.754,-16.5567,0	0/1:139:65,74:65:2336:74:2664:-198.162,0,-168.256	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:81:0,81:0:0:81:2901:-261.324,-24.3834,0	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	0/1:43:24,19:24:864:19:680:-48.5849,0,-64.9952	0/1:111:45,65:45:1620:65:2336:-177.026,0,-112.353	0/1:74:45,29:45:1616:29:1023:-70.0964,0,-123.381	1/1:185:0,185:0:0:185:6635:-597.227,-55.6906,0	1/1:135:1,134:1:36:134:4812:-429.636,-37.0412,0
chr07	1158900	.	ATT	ATG,AG	213442	PASS	AB=0.48491,0.512313;ABP=13.6924,10.1222;AC=134,52;AF=0.72043,0.27957;AN=186;AO=7167,2777;CIGAR=2M1X,1M1D1X;DP=9970;DPB=9044;DPRA=0,0.966604;EPP=15522.6,6033.19;EPPR=9.52472;GTI=0;LEN=1,2;MEANALT=1.83871,2.22807;MQM=59.9471,58.3425;MQMR=60;NS=93;NUMALT=2;ODDS=1.32653;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=256466,99276;QR=106;RO=3;RPL=7162,2777;RPP=15522.6,6033.19;RPPR=9.52472;RPR=5,0;RUN=1,1;SAF=7167,2777;SAP=15566,6033.19;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:73:0,32,41:0:0:32,41:1140,1472:-213.252,-120.362,-110.729,-93.2478,0,-80.9056	1/2:69:0,43,26:0:0:43,26:1544,936:-202.68,-76.7311,-63.7868,-126.309,0,-118.482	1/2:119:0,68,51:0:0:68,51:2429,1832:-347.838,-149.803,-129.333,-198.394,0,-183.041	1/2:233:0,123,109:0:0:123,109:4400,3905:-676.702,-317.916,-280.889,-358.863,0,-326.051	1/1:59:0,59,0:0:0:59,0:2124,0:-191.428,-17.7608,0,-191.428,-17.7608,-191.428	1/1:46:0,46,0:0:0:46,0:1648,0:-148.609,-13.8474,0,-148.609,-13.8474,-148.609	1/2:84:0,40,44:0:0:40,44:1432,1569:-244.993,-128.214,-116.173,-117.136,0,-103.891	1/1:144:0,144,0:0:0:144,0:5143,0:-462.985,-43.3483,0,-462.985,-43.3483,-462.985	1/1:163:0,162,0:0:0:162,0:5764,0:-518.513,-48.7669,0,-518.513,-48.7669,-518.513	1/2:91:0,42,49:0:0:42,49:1508,1751:-266.003,-142.99,-130.346,-123.371,0,-108.621	1/1:45:0,44,0:0:0:44,0:1576,0:-141.772,-13.2453,0,-141.772,-13.2453,-141.772	1/2:106:0,66,40:0:0:66,40:2364,1440:-310.548,-117.765,-97.8968,-193.142,0,-181.101	1/2:107:0,60,47:0:0:60,47:2123,1688:-310.281,-138.009,-119.947,-172.628,0,-158.48	1/2:79:0,39,40:0:0:39,40:1387,1431:-230.051,-117.02,-105.28,-113.388,0,-101.347	1/1:76:0,76,0:0:0:76,0:2732,0:-246.122,-22.8783,0,-246.122,-22.8783,-246.122	1/2:74:0,32,42:0:0:32,42:1152,1483:-214.915,-120.914,-111.281,-94.3572,0,-81.7139	1/2:37:0,16,21:0:0:16,21:576,756:-108.971,-61.9899,-57.1734,-47.3408,0,-41.0192	1/2:37:0,20,17:0:0:20,17:716,604:-107.963,-49.5727,-43.5521,-58.7471,0,-53.6296	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3154,-8.42884,0,-90.3154,-8.42884,-90.3154	1/1:156:1,155,0:1:36:155,0:5564,0:-497.284,-43.3624,0,-497.585,-46.6597,-500.522	1/1:162:0,161,1:0:0:161,1:5784,36:-520.312,-48.4658,0,-517.375,-45.169,-517.074	1/2:146:0,40,106:0:0:40,106:1425,3797:-426.048,-309.901,-297.859,-116.504,0,-84.5951	1/2:170:0,90,79:0:0:90,79:3236,2829:-494.593,-230.584,-203.491,-264.008,0,-240.227	1/2:51:0,18,33:0:0:18,33:644,1188:-149.751,-97.2376,-91.8191,-52.8721,0,-42.9381	1/2:118:0,43,72:0:0:43,72:1539,2566:-334.469,-208.968,-196.024,-125.499,0,-103.824	1/1:306:0,305,0:0:0:305,0:10911,0:-981.528,-91.8142,0,-981.528,-91.8142,-981.528	1/1:277:1,275,0:1:36:275,0:9853,0:-883.103,-79.8458,0,-883.404,-82.7833,-886.341	1/1:38:0,38,0:0:0:38,0:1355,0:-122.25,-11.4391,0,-122.25,-11.4391,-122.25	1/2:362:0,199,162:0:0:199,162:7133,5775:-1051.76,-469.999,-410.094,-581.862,0,-533.096	1/2:181:0,92,88:0:0:92,88:3298,3164:-527.073,-258.087,-230.393,-269.033,0,-242.543	1/1:133:0,133,0:0:0:133,0:4692,0:-422.437,-40.037,0,-422.437,-40.037,-422.437	1/1:7:0,7,0:0:0:7,0:237,0:-21.6591,-2.10721,0,-21.6591,-2.10721,-21.6591	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	.:.:.:.:.:.:.:.	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:13:0,7,6:0:0:7,6:252,212:-38.1841,-17.6186,-15.5114,-20.9217,0,-19.1156	1/2:192:0,83,108:0:0:83,108:2976,3831:-554.76,-312.03,-287.044,-242.881,0,-210.37	1/2:108:0,68,40:0:0:68,40:2429,1440:-315.682,-117.651,-97.1811,-198.389,0,-186.348	1/2:37:0,19,17:0:0:19,17:676,612:-105.034,-49.9434,-44.2238,-55.0961,0,-49.9786	1/2:3:0,2,1:0:0:2,1:72,36:-9.17166,-3.2968,-2.69474,-6.23466,0,-5.93363	1/2:135:0,61,73:0:0:61,73:2181,2591:-388.514,-210.678,-192.316,-177.832,0,-155.857	1/2:20:0,11,9:0:0:11,9:392,324:-58.6989,-26.748,-23.4367,-32.3087,0,-29.5995	1/2:205:0,95,109:0:0:95,109:3400,3833:-589.09,-311.85,-283.252,-277.235,0,-244.423	1/2:45:0,23,22:0:0:23,22:828,792:-132.529,-64.9683,-58.0447,-67.9204,0,-61.2978	1/1:71:0,71,0:0:0:71,0:2544,0:-229.211,-21.3731,0,-229.211,-21.3731,-229.211	1/1:178:0,178,0:0:0:178,0:6341,0:-570.771,-53.5833,0,-570.771,-53.5833,-570.771	1/1:164:0,160,3:0:0:160,3:5744,108:-516.741,-48.1648,0,-507.929,-39.2702,-507.026	1/1:263:0,263,0:0:0:263,0:9373,0:-843.521,-79.1709,0,-843.521,-79.1709,-843.521	1/2:160:0,76,84:0:0:76,84:2732,3016:-469.09,-246.205,-223.326,-223.244,0,-197.957	1/2:138:0,69,69:0:0:69,69:2464,2463:-401.834,-200.95,-180.179,-201.241,0,-180.47	1/2:29:0,14,15:0:0:14,15:504,540:-85.5313,-44.4074,-40.193,-41.4837,0,-36.9682	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:90:0,90,0:0:0:90,0:3240,0:-291.82,-27.0927,0,-291.82,-27.0927,-291.82	1/2:76:0,40,36:0:0:40,36:1440,1285:-222.559,-105.066,-93.0244,-117.852,0,-107.015	1/2:13:0,10,3:0:0:10,3:360,108:-38.5463,-9.17208,-6.16178,-29.734,0,-28.8309	1/2:133:0,65,68:0:0:65,68:2332,2444:-389.885,-199.671,-180.104,-190.573,0,-170.103	1/2:75:0,33,42:0:0:33,42:1188,1500:-219.406,-122.47,-112.536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chr07	1170878	.	AAG	AAC,GAC	244472	PASS	AB=0.537384,0.46035;ABP=61.946,69.3062;AC=136,50;AF=0.731183,0.268817;AN=186;AO=6863,2247;CIGAR=2M1X,1X1M1X;DP=9136;DPB=9137.67;DPRA=99.2935,1.25909;EPP=59.6239,1453.2;EPPR=5.18177;GTI=2;LEN=1,3;MEANALT=1.88043,2.18966;MQM=56.9843,55.3765;MQMR=60;NS=93;NUMALT=2;ODDS=3.12127;PAIRED=0,0;PAIREDR=0;PAO=1,3;PQA=0,104;PQR=0;PRO=1;QA=244211,78640;QR=36;RO=1;RPL=6837,2228;RPP=14680.8,4718.67;RPPR=5.18177;RPR=26,19;RUN=1,1;SAF=3194,492;SAP=74.3987,1544.56;SAR=3669,1755;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,27,13:0:0:27,13:940,447:-113.021,-36.6278,-28.5,-76.7386,0,-72.8252	1/2:146:0,60,86:0:0:60,86:2144,3028:-420.757,-246.431,-228.369,-174.68,0,-148.792	1/2:119:0,59,60:0:0:59,60:2116,2118:-345.195,-172.8,-155.039,-172.751,0,-154.689	1/2:173:0,84,89:0:0:84,89:3008,3080:-489.193,-244.348,-219.062,-245.193,0,-218.401	1/1:49:0,49,0:0:0:49,0:1741,0:-156.854,-14.7505,0,-156.854,-14.7505,-156.854	1/1:73:0,73,0:0:0:73,0:2603,0:-234.324,-21.9752,0,-234.324,-21.9752,-234.324	1/2:128:0,53,75:0:0:53,75:1904,2598:-363.836,-209.015,-193.061,-155.173,0,-132.595	1/1:167:0,167,0:0:0:167,0:5925,0:-532.324,-50.272,0,-532.324,-50.272,-532.324	1/1:134:0,133,0:0:0:133,0:4696,0:-421.894,-40.037,0,-421.894,-40.037,-421.894	1/2:137:0,56,81:0:0:56,81:1995,2856:-392.091,-229.764,-212.906,-162.68,0,-138.296	1/1:101:0,101,0:0:0:101,0:3614,0:-324.995,-30.404,0,-324.995,-30.404,-324.995	1/2:121:0,90,31:0:0:90,31:3219,1054:-347.964,-85.8207,-58.728,-262.488,0,-253.156	1/2:97:0,65,31:0:0:65,31:2324,1089:-277.848,-88.7147,-69.1478,-189.232,0,-179.9	1/2:82:0,49,33:0:0:49,33:1760,1155:-237.065,-93.6855,-78.9351,-143.731,0,-133.797	1/1:99:0,97,1:0:0:97,1:3459,36:-310.667,-29.1999,0,-307.73,-26.2625,-307.429	1/2:83:0,52,31:0:0:52,31:1856,1109:-241.498,-90.7879,-75.1343,-151.067,0,-141.735	1/2:107:0,66,40:0:0:66,40:2340,1413:-305.724,-115.14,-95.2715,-190.656,0,-178.615	1/2:83:0,48,35:0:0:48,35:1716,1212:-238.499,-98.8328,-84.3834,-140.017,0,-129.481	1/1:75:0,74,0:0:0:74,0:2605,0:-234.162,-22.2762,0,-234.162,-22.2762,-234.162	1/1:126:0,126,0:0:0:126,0:4461,0:-401.142,-37.9298,0,-401.142,-37.9298,-401.142	1/1:158:0,158,0:0:0:158,0:5639,0:-506.416,-47.5627,0,-506.416,-47.5627,-506.416	1/2:32:0,12,20:0:0:12,20:432,683:-90.997,-55.7611,-52.1488,-35.5886,0,-29.568	1/2:89:0,48,41:0:0:48,41:1716,1386:-250.438,-110.561,-96.1115,-140.22,0,-127.878	1/2:74:0,45,28:0:0:45,28:1607,980:-210.685,-79.7399,-66.1936,-130.957,0,-122.528	1/2:40:0,35,4:0:0:35,4:1252,144:-112.517,-11.7497,-1.21362,-100.767,0,-99.563	1/1:214:0,214,0:0:0:214,0:7604,0:-683.727,-64.4204,0,-683.727,-64.4204,-683.727	1/1:250:0,249,1:0:0:249,1:8844,28:-793.845,-74.9565,0,-791.627,-72.4578,-791.326	1/1:51:0,51,0:0:0:51,0:1815,0:-162.548,-15.3525,0,-162.548,-15.3525,-162.548	1/2:160:0,111,48:0:0:111,48:3972,1708:-462.329,-139.282,-105.867,-323.151,0,-308.702	1/2:107:0,56,50:0:0:56,50:1987,1759:-304.693,-143.168,-126.311,-161.52,0,-146.468	1/1:88:0,87,1:0:0:87,1:3098,36:-278.546,-26.1896,0,-275.608,-22.8924,-275.307	1/1:8:0,8,0:0:0:8,0:284,0:-25.8829,-2.40824,0,-25.8829,-2.40824,-25.8829	1/1:11:0,11,0:0:0:11,0:396,0:-35.9463,-3.31133,0,-35.9463,-3.31133,-35.9463	1/1:12:0,11,0:0:0:11,0:396,0:-35.6183,-3.31133,0,-35.6183,-3.31133,-35.6183	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:4:0,1,3:0:0:1,3:36,106:-11.9251,-8.98601,-8.68498,-3.29724,0,-2.39415	1/2:275:0,173,101:0:0:173,101:6154,3532:-787.284,-286.712,-234.634,-500.672,0,-470.268	1/2:74:0,41,33:0:0:41,33:1468,1159:-213.858,-94.6713,-82.329,-119.54,0,-109.606	1/2:73:0,40,33:0:0:40,33:1432,1134:-208.869,-92.3726,-80.3314,-116.846,0,-106.912	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:106:0,64,42:0:0:64,42:2267,1490:-305.942,-121.74,-102.474,-184.557,0,-171.913	1/2:45:0,26,19:0:0:26,19:927,680:-131.301,-55.8098,-47.983,-75.8487,0,-70.1291	1/2:118:0,78,40:0:0:78,40:2788,1372:-338.319,-111.167,-87.687,-227.498,0,-215.457	1/2:127:0,62,65:0:0:62,65:2197,2278:-361.283,-183.338,-164.674,-178.295,0,-158.728	1/1:116:0,114,0:0:0:114,0:4068,0:-365.698,-34.3174,0,-365.698,-34.3174,-365.698	1/1:80:0,78,0:0:0:78,0:2772,0:-249.018,-23.4803,0,-249.018,-23.4803,-249.018	1/1:130:0,130,0:0:0:130,0:4609,0:-413.521,-39.1339,0,-413.521,-39.1339,-413.521	1/1:132:0,131,0:0:0:131,0:4673,0:-418.426,-39.4349,0,-418.426,-39.4349,-418.426	1/2:103:0,46,57:0:0:46,57:1626,1989:-291.424,-159.166,-145.319,-132.607,0,-115.448	1/2:191:0,71,120:0:0:71,120:2525,4243:-547.487,-341.9,-320.527,-205.94,0,-169.816	1/2:89:0,63,26:0:0:63,26:2241,899:-255.769,-73.307,-54.3421,-182.811,0,-174.984	1/1:9:0,9,0:0:0:9,0:324,0:-29.4957,-2.70927,0,-29.4957,-2.70927,-29.4957	1/1:139:0,139,0:0:0:139,0:4955,0:-444.797,-41.8432,0,-444.797,-41.8432,-444.797	1/2:40:0,23,17:0:0:23,17:824,602:-116.466,-49.3929,-42.4692,-67.4283,0,-62.3108	1/1:9:0,9,0:0:0:9,0:312,0:-28.3626,-2.70927,0,-28.3626,-2.70927,-28.3626	1/2:73:0,47,26:0:0:47,26:1651,906:-208.331,-74.0266,-59.8782,-134.654,0,-126.8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chr07	1213416	.	C	T	7.82008e-10	PASS	AB=0.474241;ABP=28.6288;AC=52;AF=0.276596;AN=188;AO=2120;CIGAR=1X;DP=7875;DPB=7875;DPRA=1.33837;EPP=4606.53;EPPR=12456.4;GTI=48;LEN=1;MEANALT=1.07018;MQM=15.766;MQMR=59.2824;NS=94;NUMALT=1;ODDS=23.2202;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76014;QR=205318;RO=5751;RPL=2120;RPP=4606.53;RPPR=12456.4;RPR=0;RUN=1;SAF=0;SAP=4606.53;SAR=2120;SRF=0;SRP=12491.1;SRR=5751;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:17,12:17:608:12:432:-12.8841,0,-46.2862	0/1:178:95,83:95:3370:83:2969:-61.4014,0,-249.743	0/1:185:111,74:111:3969:74:2660:-46.8291,0,-301.645	0/1:218:98,120:98:3513:120:4312:-102.227,0,-248.877	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1125	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:73:43,30:43:1544:30:1076:-20.2091,0,-117.242	0/0:202:202,0:202:7138:0:0:0,-60.8081,-642.368	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.092	0/1:86:46,40:46:1637:40:1436:-31.5715,0,-121.621	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.455	0/1:66:46,20:46:1641:20:720:-7.22162,0,-128.073	0/1:65:34,31:34:1224:31:1116:-22.3397,0,-88.6634	0/1:78:54,24:54:1940:24:864:-8.72774,0,-151.324	0/0:81:81,0:81:2916:0:0:0,-24.3834,-262.603	0/1:68:42,26:42:1497:26:932:-14.2481,0,-114.517	0/1:30:13,17:13:468:17:612:-13.567,0,-33.4287	0/1:26:12,14:12:432:14:504:-11.181,0,-31.3944	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.336	0/0:104:104,0:104:3725:0:0:0,-31.3071,-335.449	0/0:115:115,0:115:4113:0:0:0,-34.6184,-368.358	0/1:62:18,44:18:648:44:1580:-40.7495,0,-34.8166	0/1:46:22,24:22:788:24:864:-18.6304,0,-57.3974	0/1:44:33,11:33:1184:11:396:-3.56171,0,-93.623	0/1:75:41,34:41:1457:34:1209:-28.5016,0,-107.129	0/0:220:218,1:218:7787:1:36:0,-64.6812,-699.034	0/0:175:175,0:175:6224:0:0:0,-52.6802,-559.529	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:196:96,100:96:3432:100:3592:-78.5543,0,-249.587	0/1:235:138,97:138:4907:97:3454:-65.5828,0,-370.859	0/0:59:59,0:59:2105:0:0:0,-17.7608,-188.771	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:20:12,8:12:417:8:288:-6.62492,0,-31.8396	0/1:123:71,52:71:2518:52:1872:-32.4497,0,-189.616	0/1:70:50,20:50:1788:20:716:-7.8087,0,-140.095	0/1:51:32,19:32:1152:19:684:-11.4224,0,-86.7575	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:123:66,57:66:2338:57:2052:-44.3026,0,-173.596	0/1:23:14,9:14:504:9:320:-5.34448,0,-38.7025	0/1:134:64,70:64:2262:70:2520:-55.7108,0,-159.986	0/1:39:20,18:20:705:18:648:-14.5383,0,-52.183	0/1:42:21,20:21:741:20:720:-14.5979,0,-54.5028	0/0:90:90,0:90:3190:0:0:0,-27.0927,-287.099	0/0:121:121,0:121:4336:0:0:0,-36.4246,-390.044	0/0:166:166,0:166:5908:0:0:0,-49.971,-531.337	0/1:86:45,41:45:1605:41:1457:-28.7891,0,-118.85	0/1:150:75,75:75:2681:75:2696:-55.4783,0,-196.236	0/1:86:29,57:29:1044:57:2044:-54.3495,0,-68.3862	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:173:171,2:171:6148:2:72:0,-49.2345,-550.488	0/1:67:28,39:28:1004:39:1404:-34.2761,0,-68.6525	1/1:2:0,2:0:0:2:72:-2.84368,-0.60206,0	0/1:123:65,58:65:2336:58:2088:-44.7742,0,-173.365	0/1:21:9,12:9:316:12:428:-9.71894,0,-22.4572	0/0:10:9,1:9:324:1:32:0,-1.51861,-28.0142	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.218	0/0:96:96,0:96:3403:0:0:0,-28.8989,-306.36	0/1:6:2,4:2:72:4:144:-5.56673,0,-5.03054	0/1:131:75,55:75:2688:55:1957:-35.948,0,-202.683	0/0:185:183,2:183:6529:2:72:0,-52.8469,-584.69	0/1:76:34,42:34:1209:42:1489:-34.9191,0,-86.2	0/0:75:75,0:75:2666:0:0:0,-22.5772,-240.183	0/1:105:49,56:49:1734:56:1977:-48.636,0,-122.926	0/1:258:90,168:90:3221:168:6040:-154.238,0,-208.889	0/1:54:39,15:39:1400:15:540:-4.09912,0,-109.553	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.274	0/1:48:30,18:30:1080:18:648:-11.8044,0,-83.0189	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.946	0/1:89:52,37:52:1868:37:1328:-23.8736,0,-141.502	0/1:95:53,42:53:1855:42:1493:-29.8103,0,-136.734	0/0:121:121,0:121:4333:0:0:0,-36.4246,-389.513	0/1:182:85,97:85:3029:97:3477:-79.9697,0,-218.052	0/1:94:49,45:49:1764:45:1616:-35.8881,0,-121.697	0/0:128:127,1:127:4568:1:36:0,-37.0352,-409.217	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:122:122,0:122:4319:0:0:0,-36.7257,-387.932	0/0:140:137,3:137:4893:3:108:0,-37.9535,-436.254	0/0:120:120,0:120:4289:0:0:0,-36.1236,-385.978	0/1:36:25,11:25:900:11:392:-4.03484,0,-70.4481	0/1:66:39,27:39:1404:27:968:-18.1187,0,-106.79	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.954	0/1:83:43,40:43:1529:40:1440:-31.9397,0,-112.88	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3313	0/0:51:51,0:51:1787:0:0:0,-15.3525,-161.07	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.679	0/1:61:33,28:33:1188:28:1004:-18.8713,0,-88.83	0/1:92:59,33:59:2116:33:1184:-20.3475,0,-162.873	0/1:51:17,34:17:608:34:1224:-32.3631,0,-39.6995	0/0:185:185,0:185:6614:0:0:0,-55.6905,-592.454	0/0:65:65,0:65:2306:0:0:0,-19.5669,-207.385
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chr07	1269909	.	A	G	38703.9	PASS	AB=0.489483;ABP=6.89273;AC=53;AF=0.284946;AN=186;AO=1983;CIGAR=1X;DP=6809;DPB=6809;DPRA=1.28169;EPP=1711.28;EPPR=2415.91;GTI=1;LEN=1;MEANALT=1.05556;MQM=40.6334;MQMR=58.8524;NS=93;NUMALT=1;ODDS=3.10602;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70965;QR=172172;RO=4823;RPL=367;RPP=1711.28;RPPR=2415.91;RPR=1616;RUN=1;SAF=1983;SAP=4309.04;SAR=0;SRF=4823;SRP=10476;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:7,7:7:252:7:252:-17.4662,0,-18.7513	0/1:103:49,54:49:1760:54:1944:-132.903,0,-127.022	0/1:65:49,16:49:1764:16:576:-29.5532,0,-139.267	0/1:132:61,69:61:2180:69:2457:-175.174,0,-156.938	0/0:48:48,0:48:1709:0:0:0,-14.4494,-153.88	0/0:45:45,0:45:1597:0:0:0,-13.5463,-143.856	0/1:100:45,55:45:1620:55:1976:-141.376,0,-115.94	0/0:91:91,0:91:3226:0:0:0,-27.3937,-290.148	0/0:49:49,0:49:1764:0:0:0,-14.7505,-158.944	0/1:76:35,41:35:1245:41:1461:-105.121,0,-87.7596	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.646	0/1:66:30,36:30:1072:36:1296:-88.6524,0,-76.8094	0/1:67:39,28:39:1389:28:1008:-64.9802,0,-105.048	0/1:56:32,24:32:1152:24:856:-55.8762,0,-87.0815	0/0:58:58,0:58:2084:0:0:0,-17.4597,-186.94	0/1:41:24,17:24:849:17:612:-40.7963,0,-64.354	0/1:68:37,31:37:1302:31:1116:-73.6341,0,-96.837	0/1:79:42,37:42:1512:37:1313:-87.3397,0,-112.433	0/0:43:43,0:43:1495:0:0:0,-12.9443,-134.796	0/0:63:63,0:63:2253:0:0:0,-18.9649,-202.933	0/0:111:111,0:111:3931:0:0:0,-33.4143,-353.255	0/1:54:14,40:14:500:40:1440:-110.964,0,-29.0699	0/1:62:32,30:32:1144:30:1077:-74.5918,0,-84.5732	0/1:75:49,26:49:1764:26:917:-55.2759,0,-136.421	0/1:53:16,36:16:576:36:1277:-94.3376,0,-36.1751	0/0:232:230,2:230:8216:2:72:0,-63.1203,-730.766	0/0:106:106,0:106:3774:0:0:0,-31.9092,-339.374	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:188:83,105:83:2969:105:3747:-272.911,0,-210.643	0/1:141:88,53:88:3160:53:1900:-120.81,0,-242.1	0/0:134:134,0:134:4771:0:0:0,-40.338,-429.378	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2437	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3099	0/1:4:2,2:2:72:2:72:-5.14817,0,-5.63069	0/1:218:109,109:109:3924:109:3907:-277.057,0,-287.667	0/1:147:79,68:79:2798:68:2414:-163.354,0,-207.5	0/1:36:21,15:21:756:15:536:-33.9388,0,-57.4943	1/1:2:0,2:0:0:2:72:-6.56353,-0.60206,0	0/1:124:68,56:68:2399:56:1999:-133.58,0,-178.792	0/1:30:10,20:10:345:20:720:-53.4954,0,-22.3499	0/1:87:52,35:52:1853:35:1260:-81.2558,0,-140.805	0/1:82:48,34:48:1720:34:1224:-82.8049,0,-130.373	0/1:70:36,34:36:1277:34:1205:-82.8463,0,-94.1366	0/0:110:110,0:110:3903:0:0:0,-33.1133,-351.426	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.813	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.514	0/1:82:46,36:46:1656:36:1292:-88.0801,0,-124.553	0/1:94:51,43:51:1820:43:1540:-105.108,0,-135.757	0/1:104:54,50:54:1940:50:1800:-125.386,0,-143.555	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.694	0/1:27:17,10:17:612:10:345:-22.3038,0,-47.2718	0/1:18:11,7:11:392:7:248:-15.9576,0,-30.192	0/1:77:37,40:37:1317:40:1436:-99.0333,0,-95.6463	0/1:31:14,17:14:500:17:599:-42.4232,0,-35.9817	0/1:2:1,1:1:36:1:36:-2.93406,0,-2.99621	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6451	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.631	.:.:.:.:.:.:.:.	0/1:202:113,89:113:4052:89:3192:-221.045,0,-303.86	0/0:169:169,0:169:6050:0:0:0,-50.8741,-543.607	0/1:57:26,31:26:936:31:1094:-77.1934,0,-67.3282	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.849	0/1:116:52,64:52:1872:64:2296:-164.178,0,-133.818	0/1:72:22,50:22:773:50:1791:-135.115,0,-48.1929	0/1:19:8,11:8:288:11:396:-28.8253,0,-20.5469	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.07	0/1:97:48,49:48:1705:49:1756:-125.599,0,-124.496	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:90:40,50:40:1436:50:1781:-123.595,0,-102.184	0/1:65:37,28:37:1298:28:1004:-65.5412,0,-97.342	0/0:126:126,0:126:4478:0:0:0,-37.9298,-402.545	0/1:81:54,27:54:1925:27:964:-60.4606,0,-148.889	0/1:65:39,26:39:1389:26:928:-59.4466,0,-105.642	0/0:105:105,0:105:3760:0:0:0,-31.6081,-337.249	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6115	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.492	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.126	0/0:152:152,0:152:5400:0:0:0,-45.7566,-486.096	0/1:98:38,60:38:1368:60:2160:-157.483,0,-93.8962	0/1:55:24,31:24:864:31:1101:-79.94,0,-61.4897	0/0:80:79,1:79:2836:1:36:0,-20.5797,-251.961	0/1:175:102,73:102:3638:73:2620:-176.202,0,-274.544	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.432	0/0:80:80,0:80:2853:0:0:0,-24.0824,-256.579	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201	0/1:27:12,15:12:402:15:536:-38.0644,0,-28.336	0/1:82:37,45:37:1328:45:1620:-112.242,0,-94.9988	0/1:67:20,47:20:701:47:1688:-126.768,0,-43.2018	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.631	0/0:101:101,0:101:3594:0:0:0,-30.404,-323.595
chr07	1269914	.	A	G	29889.4	PASS	AB=0.483483;ABP=12.4787;AC=53;AF=0.284946;AN=186;AO=1938;CIGAR=1X;DP=6760;DPB=6760;DPRA=1.27215;EPP=4159.37;EPPR=9702.37;GTI=1;LEN=1;MEANALT=1.01852;MQM=40.6414;MQMR=58.8461;NS=93;NUMALT=1;ODDS=3.13078;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69244;QR=172528;RO=4820;RPL=1932;RPP=4159.37;RPPR=9702.37;RPR=6;RUN=1;SAF=1938;SAP=4211.32;SAR=0;SRF=4820;SRP=10469.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:7,7:7:252:7:252:-17.4662,0,-18.7513	0/1:104:49,55:49:1748:55:1959:-134.23,0,-125.643	0/1:65:49,16:49:1752:16:576:-29.5532,0,-138.161	0/1:130:64,66:64:2285:66:2368:-167.849,0,-166.699	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.489	0/0:45:45,0:45:1620:0:0:0,-13.5463,-145.905	0/1:99:45,54:45:1616:54:1936:-138.215,0,-115.894	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.476	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.347	0/1:75:35,40:35:1260:40:1425:-102.27,0,-89.4134	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.646	0/1:65:30,35:30:1068:35:1260:-85.9045,0,-76.7828	0/1:66:39,27:39:1400:27:972:-62.4709,0,-106.341	0/1:54:32,22:32:1148:22:775:-50.4823,0,-87.3282	0/0:58:58,0:58:2084:0:0:0,-17.4597,-186.953	0/1:40:23,17:23:820:17:600:-40.2625,0,-62.0498	0/1:69:38,31:38:1364:31:1108:-72.8184,0,-102.118	0/1:76:41,35:41:1472:35:1256:-83.4314,0,-109.825	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.005	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.283	0/0:115:115,0:115:4113:0:0:0,-34.6184,-369.623	0/1:53:13,40:13:464:40:1440:-111.265,0,-26.1386	0/1:62:33,29:33:1184:29:1026:-70.1689,0,-88.1259	0/1:74:51,23:51:1820:23:828:-48.3077,0,-141.74	0/1:52:16,36:16:576:36:1288:-95.6231,0,-36.5214	0/0:234:231,3:231:8257:3:108:0,-60.4903,-731.246	0/0:105:105,0:105:3749:0:0:0,-31.6081,-337.125	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/1:188:84,104:84:3016:104:3728:-271.419,0,-214.864	0/1:140:88,52:88:3160:52:1864:-118.001,0,-242.402	0/0:134:134,0:134:4785:0:0:0,-40.338,-430.664	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2437	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3099	0/1:4:2,2:2:72:2:72:-5.14817,0,-5.63069	0/1:210:109,101:109:3916:101:3614:-253.731,0,-289.356	0/1:146:79,67:79:2813:67:2408:-163.059,0,-208.733	0/1:36:21,15:21:756:15:540:-34.1201,0,-57.4943	1/1:2:0,2:0:0:2:72:-6.56353,-0.60206,0	0/1:123:67,56:67:2408:56:1985:-133.229,0,-179.903	0/1:30:10,20:10:352:20:720:-53.4954,0,-22.9864	0/1:87:52,35:52:1857:35:1251:-80.6051,0,-141.165	0/1:83:49,34:49:1760:34:1220:-82.1932,0,-133.662	0/1:70:36,34:36:1296:34:1194:-82.2928,0,-95.8494	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.475	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.403	0/0:87:87,0:87:3105:0:0:0,-26.1896,-279.61	0/1:81:46,35:46:1652:35:1244:-84.5038,0,-124.494	0/1:93:51,42:51:1836:42:1497:-101.325,0,-137.497	0/1:101:53,48:53:1896:48:1728:-120.358,0,-140.5	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:74:74,0:74:2628:0:0:0,-22.2762,-236.58	0/1:28:17,11:17:608:11:389:-26.0783,0,-46.6094	0/1:18:11,7:11:396:7:248:-15.9576,0,-30.5542	0/1:74:34,40:34:1216:40:1432:-99.6491,0,-87.4647	0/1:31:14,17:14:504:17:603:-42.7349,0,-36.3436	0/1:2:1,1:1:36:1:36:-2.93406,0,-2.99621	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6385	0/0:121:121,0:121:4317:0:0:0,-36.4246,-388.441	.:.:.:.:.:.:.:.	0/1:203:116,87:116:4145:87:3100:-212.019,0,-311.908	0/0:168:168,0:168:6008:0:0:0,-50.573,-539.848	0/1:57:26,31:26:932:31:1105:-77.945,0,-66.9676	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.44	0/1:113:51,62:51:1809:62:2232:-159.387,0,-129.059	0/1:70:21,49:21:756:49:1751:-132.254,0,-47.2726	0/1:20:9,9:9:320:9:320:-22.2734,0,-22.3471	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.312	0/1:96:47,49:47:1684:49:1749:-125.099,0,-122.91	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:89:40,49:40:1424:49:1752:-121.458,0,-101.407	0/1:63:36,27:36:1296:27:972:-63.5324,0,-97.8557	0/0:121:121,0:121:4317:0:0:0,-36.4246,-388.197	0/1:81:55,26:55:1972:26:936:-57.93,0,-153.119	0/1:64:38,26:38:1364:26:932:-60.1597,0,-103.732	0/0:104:104,0:104:3732:0:0:0,-31.3071,-333.28	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3728	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.335	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.566	0/0:152:152,0:152:5414:0:0:0,-45.7566,-487.279	0/1:96:38,58:38:1352:58:2072:-150.713,0,-93.0583	0/1:54:25,29:25:900:29:1027:-73.0923,0,-65.0292	0/0:80:79,1:79:2828:1:36:0,-20.5797,-251.25	0/1:174:103,71:103:3692:71:2505:-166.617,0,-279.725	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.016	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.162	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.689	0/1:25:11,14:11:396:14:504:-35.8458,0,-28.4393	0/1:81:38,43:38:1356:43:1540:-105.92,0,-97.8148	0/1:67:19,48:19:684:48:1689:-126.672,0,-41.685	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.351	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.407
chr07	1277841	.	TATTC	CATTC	133077	PASS	AB=0.50667;ABP=4.7193;AC=132;AF=0.709677;AN=186;AO=5058;CIGAR=1X4M;DP=7277;DPB=7277;DPRA=79.9451;EPP=8.205;EPPR=39.7638;GTI=1;LEN=1;MEANALT=1.41758;MQM=59.9585;MQMR=59.9683;NS=93;NUMALT=1;ODDS=3.58036;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180156;QR=76049;RO=2178;RPL=21;RPP=10804.7;RPPR=4611.66;RPR=5037;RUN=1;SAF=2495;SAP=4.99545;SAR=2563;SRF=1007;SRP=29.8257;SRR=1171;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:15,20:15:516:20:707:-53.4185,0,-36.2002	0/1:58:38,20:38:1327:20:711:-46.8559,0,-102.27	0/1:106:65,41:65:2255:41:1445:-98.4328,0,-171.3	0/1:86:52,33:52:1811:33:1184:-81.0179,0,-137.422	1/1:25:0,21:0:0:21:745:-67.0144,-6.32163,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:46:21,25:21:720:25:900:-67.4736,0,-51.2717	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:68:0,67:0:0:67:2389:-214.904,-20.169,0	0/1:42:21,21:21:729:21:752:-55.363,0,-53.2879	1/1:109:0,108:0:0:108:3845:-346.005,-32.5112,0	0/1:181:85,96:85:2980:96:3385:-250.342,0,-213.951	0/1:159:67,92:67:2361:92:3304:-249.713,0,-164.887	0/1:173:76,97:76:2640:97:3443:-258.004,0,-185.771	1/1:151:0,151:0:0:151:5395:-485.595,-45.4555,0	0/1:101:46,55:46:1601:55:1959:-146.181,0,-113.974	0/1:154:79,74:79:2751:74:2608:-188.593,0,-201.467	0/1:154:72,80:72:2502:80:2844:-210.081,0,-179.319	1/1:97:0,95:0:0:95:3403:-306.126,-28.5979,0	1/1:108:1,105:1:36:105:3751:-334.205,-28.6641,0	1/1:64:1,62:1:36:62:2219:-196.448,-15.6515,0	0/1:38:31,7:31:1092:7:248:-11.2251,0,-87.1498	0/1:26:14,11:14:487:11:396:-28.2345,0,-36.4147	0/1:38:14,23:14:479:23:823:-62.9815,0,-32.0223	0/1:24:12,12:12:407:12:432:-31.9965,0,-29.7309	1/1:109:0,108:0:0:108:3851:-346.575,-32.5112,0	1/1:98:0,98:0:0:98:3520:-317.009,-29.5009,0	1/1:72:0,72:0:0:72:2563:-230.92,-21.6742,0	0/1:133:63,69:63:2189:69:2465:-182.153,0,-157.329	0/1:29:16,13:16:555:13:468:-33.7298,0,-41.5465	1/1:24:0,24:0:0:24:842:-75.9371,-7.22472,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:15:11,4:11:389:4:144:-8.79817,0,-30.833	0/1:333:170,162:170:5967:162:5795:-421.493,0,-437.007	0/1:36:15,21:15:508:21:752:-57.1692,0,-35.205	0/1:100:44,56:44:1541:56:1995:-149.72,0,-108.841	.:.:.:.:.:.:.:.	0/1:66:35,31:35:1220:31:1112:-80.5188,0,-90.2353	0/1:81:40,41:40:1406:41:1476:-108.753,0,-102.453	0/1:70:37,33:37:1317:33:1180:-85.4359,0,-97.7604	0/1:107:48,59:48:1687:59:2087:-155.889,0,-119.906	0/1:103:47,56:47:1651:56:2003:-149.537,0,-117.87	1/1:57:0,55:0:0:55:1968:-177.083,-16.5567,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:58:0,58:0:0:58:2065:-186.12,-17.4597,0	0/1:52:26,26:26:902:26:920:-67.4635,0,-65.8409	0/1:67:43,24:43:1499:24:860:-57.5528,0,-115.034	0/1:81:37,44:37:1295:44:1563:-116.577,0,-92.468	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:70:1,69:1:30:69:2472:-219.734,-18.0725,0	0/1:12:4,8:4:129:8:284:-22.291,0,-8.31657	0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863	0/1:61:26,35:26:910:35:1251:-94.5314,0,-63.8525	0/1:17:6,11:6:208:11:396:-30.8652,0,-13.9415	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:49:0,48:0:0:48:1673:-150.49,-14.4494,0	1/1:217:3,214:3:102:214:7602:-674.703,-55.8069,0	0/1:5:3,2:3:106:2:72:-5.33157,0,-8.38401	0/1:55:30,24:30:1058:24:856:-60.7458,0,-78.9164	1/1:102:0,101:0:0:101:3606:-324.445,-30.404,0	0/1:33:11,22:11:385:22:779:-60.4981,0,-25.0512	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:60:26,33:26:895:33:1180:-88.3875,0,-62.7423	0/1:52:34,18:34:1185:18:644:-42.6085,0,-91.3011	0/1:86:35,51:35:1205:51:1824:-138.553,0,-82.861	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	0/1:141:70,70:70:2447:70:2472:-180.229,0,-177.984	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:32:21,11:21:731:11:392:-25.9871,0,-56.4747	0/1:65:25,40:25:864:40:1436:-109.971,0,-58.5077	1/1:51:0,49:0:0:49:1749:-157.361,-14.7505,0	0/1:92:50,42:50:1761:42:1504:-107.96,0,-131.079	0/1:70:28,41:28:979:41:1449:-109.661,0,-67.379	1/1:65:2,63:2:72:63:2218:-193.043,-12.7302,0	1/1:7:0,7:0:0:7:235:-21.4779,-2.10721,0	1/1:63:0,61:0:0:61:2164:-194.81,-18.3628,0	1/1:93:0,93:0:0:93:3320:-299.019,-27.9958,0	1/1:108:1,107:1:36:107:3822:-340.578,-28.913,0	0/1:156:59,95:59:2048:95:3362:-256.08,0,-137.873	0/1:151:80,69:80:2803:69:2440:-174.641,0,-207.301	1/1:157:1,155:1:35:155:5516:-493.064,-43.8169,0	0/1:216:104,112:104:3605:112:3991:-294.359,0,-259.641	1/1:60:0,60:0:0:60:2121:-191.157,-18.0618,0	1/1:148:0,148:0:0:148:5276:-474.979,-44.5524,0	1/1:121:0,120:0:0:120:4286:-385.578,-36.1236,0	0/1:129:56,73:56:1977:73:2585:-194.063,0,-139.372	0/1:164:71,93:71:2475:93:3290:-246.948,0,-173.636	0/1:132:85,45:85:3004:45:1592:-104.139,0,-231.17	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:224:2,221:2:72:221:7868:-701.316,-60.6528,0
chr07	1278541	.	A	G	35362.5	PASS	AB=0.45216;ABP=99.2071;AC=52;AF=0.276596;AN=188;AO=2194;CIGAR=1X;DP=8688;DPB=8688;DPRA=1.15117;EPP=4767.22;EPPR=14102.4;GTI=0;LEN=1;MEANALT=1;MQM=59.897;MQMR=59.9697;NS=94;NUMALT=1;ODDS=0.578473;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78400;QR=228037;RO=6493;RPL=0;RPP=4767.22;RPPR=14102.4;RPR=2194;RUN=1;SAF=2194;SAP=4767.22;SAR=0;SRF=6493;SRP=14102.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:42,29:42:1504:29:1032:-71.819,0,-114.277	0/1:71:35,36:35:1203:36:1284:-94.4903,0,-87.1934	0/1:163:100,63:100:3523:63:2249:-153.604,0,-268.206	0/1:248:146,102:146:5156:102:3633:-252.433,0,-389.526	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.374	0/1:56:34,22:34:1216:22:777:-53.3927,0,-92.8751	0/0:144:144,0:144:5144:0:0:0,-43.3483,-463.103	0/0:109:109,0:109:3892:0:0:0,-32.8123,-350.475	0/1:67:35,32:35:1233:32:1140:-82.732,0,-91.1031	0/0:40:40,0:40:1409:0:0:0,-12.0412,-127.105	0/1:100:53,47:53:1900:47:1676:-121.024,0,-141.175	0/1:72:44,28:44:1549:28:1000:-68.6412,0,-118.026	0/1:59:39,20:39:1392:20:716:-47.0069,0,-107.818	0/0:88:88,0:88:3118:0:0:0,-26.4906,-280.845	0/1:54:30,24:30:1056:24:860:-61.4662,0,-79.0953	0/1:51:33,18:33:1184:18:644:-42.9381,0,-91.5158	0/1:52:25,27:25:872:27:972:-72.1159,0,-63.1401	0/0:32:32,0:32:1099:0:0:0,-9.63296,-99.21	0/0:150:150,0:150:5254:0:0:0,-45.1545,-472.997	0/0:146:146,0:146:5162:0:0:0,-43.9504,-464.725	0/1:155:102,53:102:3544:53:1889:-123.626,0,-272.239	0/1:82:48,34:48:1705:34:1212:-84.6735,0,-129.049	0/1:46:22,24:22:784:24:860:-63.8745,0,-57.0365	0/1:39:24,15:24:852:15:540:-37.1964,0,-65.2602	0/0:217:215,2:215:7487:2:72:0,-58.4868,-667.044	0/0:202:202,0:202:7159:0:0:0,-60.8081,-644.371	0/0:36:36,0:36:1110:0:0:0,-10.8371,-100.176	0/1:307:181,126:181:6385:126:4518:-314.371,0,-482.326	0/1:162:99,63:99:3486:63:2238:-152.895,0,-265.186	0/0:151:151,0:151:5297:0:0:0,-45.4555,-476.813	0/0:13:13,0:13:445:0:0:0,-3.91339,-40.3754	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2943	0/1:12:7,5:7:248:5:176:-12.5727,0,-19.0518	0/1:187:106,81:106:3773:81:2912:-206.022,0,-283.477	0/1:293:143,150:143:4865:150:5382:-396.303,0,-349.798	0/1:48:24,24:24:841:24:864:-63.5883,0,-61.5569	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:83:54,29:54:1924:29:1044:-69.2893,0,-148.451	0/1:29:15,14:15:419:14:504:-36.9682,0,-29.2504	0/1:124:72,52:72:2531:52:1864:-130.712,0,-190.71	0/1:48:29,19:29:1036:19:684:-47.4124,0,-79.1045	0/1:59:27,32:27:926:32:1144:-85.5072,0,-65.8869	0/0:100:100,0:100:3568:0:0:0,-30.103,-321.329	0/0:138:137,1:137:4798:1:36:0,-37.9439,-428.378	0/0:175:173,2:173:6138:2:72:0,-45.8435,-545.686	0/1:80:48,32:48:1678:32:1148:-79.5474,0,-127.22	0/1:99:38,61:38:1333:61:2169:-165.669,0,-90.4658	0/1:44:19,25:19:680:25:885:-66.7212,0,-48.2838	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:110:110,0:110:3909:0:0:0,-33.1133,-351.378	0/1:78:52,26:52:1852:26:928:-60.3579,0,-143.48	0/1:17:12,5:12:390:5:180:-11.4346,0,-30.2945	0/1:124:80,44:80:2788:44:1565:-103.811,0,-213.83	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/1:18:12,6:12:424:6:212:-14.0063,0,-33.0779	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:94:94,0:94:3369:0:0:0,-28.2968,-303.424	0/0:97:96,1:96:3429:1:36:0,-25.6016,-305.224	0/0:6:6,0:6:197:0:0:0,-1.80618,-18.0513	0/1:223:123,100:123:4305:100:3547:-251.816,0,-320.498	0/0:190:190,0:190:6765:0:0:0,-57.1957,-608.699	0/1:36:26,10:26:917:10:360:-21.8786,0,-72.0075	0/0:119:119,0:119:4219:0:0:0,-35.8226,-379.884	0/1:151:72,79:72:2549:79:2805:-207.234,0,-184.205	0/1:268:61,207:61:2059:207:7387:-584.181,0,-104.895	0/1:36:23,13:23:801:13:468:-31.6226,0,-61.5696	0/0:52:51,0:51:1805:0:0:0,-15.3525,-162.37	0/1:41:22,19:22:784:19:684:-49.5481,0,-58.5417	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:95:47,48:47:1688:48:1716:-126.12,0,-123.609	0/1:76:45,31:45:1588:31:1108:-77.1527,0,-120.332	0/0:112:112,0:112:3953:0:0:0,-33.7154,-355.965	0/1:203:119,84:119:4195:84:3020:-210.915,0,-316.623	0/1:42:31,11:31:1112:11:392:-22.9651,0,-87.7481	0/0:188:188,0:188:6451:0:0:0,-56.5936,-580.657	0/0:18:18,0:18:625:0:0:0,-5.41854,-56.5725	0/0:151:151,0:151:4978:0:0:0,-45.4555,-448.178	0/0:169:169,0:169:5866:0:0:0,-50.8741,-528.055	0/0:208:208,0:208:7248:0:0:0,-62.6142,-652.373	0/1:52:28,24:28:1004:24:864:-62.429,0,-75.02	0/1:69:39,30:39:1358:30:1070:-75.841,0,-101.743	0/0:58:58,0:58:2031:0:0:0,-17.4597,-183.057	0/1:120:63,57:63:2260:57:2032:-147.027,0,-167.539	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:85:85,0:85:3025:0:0:0,-25.5875,-272.48	0/0:86:86,0:86:3045:0:0:0,-25.8886,-274.28	0/1:33:15,18:15:532:18:648:-48.7179,0,-38.2791	0/1:93:59,34:59:2070:34:1214:-81.5704,0,-158.572	0/1:75:33,42:33:1139:42:1500:-112.717,0,-80.1015	0/0:90:90,0:90:3147:0:0:0,-27.0927,-283.455	0/0:102:102,0:102:3587:0:0:0,-30.7051,-323.037
chr07	1278731	.	A	G	87985.6	PASS	AB=0.502291;ABP=3.36844;AC=52;AF=0.276596;AN=188;AO=3983;CIGAR=1X;DP=13814;DPB=13814;DPRA=1.29719;EPP=8651.98;EPPR=21303;GTI=0;LEN=1;MEANALT=1.08696;MQM=59.9761;MQMR=59.9912;NS=94;NUMALT=1;ODDS=2.70977;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139472;QR=345155;RO=9825;RPL=1779;RPP=101.484;RPPR=60.722;RPR=2204;RUN=1;SAF=1779;SAP=101.484;SAR=2204;SRF=4659;SRP=59.822;SRR=5166;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:9,19:9:324:19:655:-50.8417,0,-21.077	0/1:241:140,101:140:4909:101:3520:-244.459,0,-369.418	0/1:185:83,102:83:2884:102:3563:-265.187,0,-204.104	0/1:255:128,127:128:4497:127:4475:-326.157,0,-328.138	0/0:108:105,3:105:3671:3:93:0,-23.8345,-321.919	0/0:77:76,1:76:2674:1:21:0,-21.0794,-238.807	0/1:176:91,85:91:3227:85:3015:-218.598,0,-237.67	0/0:234:233,1:233:8139:1:36:0,-66.8427,-728.94	0/0:110:110,0:110:3826:0:0:0,-33.1133,-344.541	0/1:129:58,71:58:2064:71:2496:-186.057,0,-147.198	0/0:139:139,0:139:4813:0:0:0,-41.8432,-433.337	0/1:175:96,79:96:3333:79:2775:-197.311,0,-247.511	0/1:174:92,82:92:3196:82:2849:-204.267,0,-235.487	0/1:151:84,67:84:2957:67:2292:-161.08,0,-220.909	0/0:137:137,0:137:4809:0:0:0,-41.2411,-432.972	0/1:147:65,82:65:2281:82:2904:-217.344,0,-161.3	0/1:177:100,77:100:3480:77:2658:-186.181,0,-260.133	0/1:156:70,86:70:2467:86:3001:-223.363,0,-175.325	0/0:105:103,2:103:3587:2:72:0,-24.7714,-316.203	0/0:191:191,0:191:6764:0:0:0,-57.4967,-608.835	0/0:197:197,0:197:6928:0:0:0,-59.3029,-623.598	0/1:72:20,52:20:708:52:1852:-145.284,0,-42.3714	0/1:93:50,43:50:1723:43:1500:-107.295,0,-127.356	0/1:148:81,67:81:2871:67:2349:-167.115,0,-214.076	0/1:81:34,47:34:1216:47:1627:-122.223,0,-85.3631	0/0:394:392,2:392:13873:2:68:0,-112.148,-1241.9	0/0:272:269,2:269:9492:2:64:0,-75.847,-848.157	0/0:82:82,0:82:2915:0:0:0,-24.6845,-262.586	0/1:238:131,107:131:4603:107:3757:-266.683,0,-342.79	0/1:176:102,73:102:3610:73:2531:-174.997,0,-272.066	0/0:192:192,0:192:6704:0:0:0,-57.7978,-603.451	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:22:21,1:21:726:1:36:0,-3.02438,-62.0577	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:8:8,0:8:257:0:0:0,-2.40824,-23.4437	0/1:16:10,6:10:356:6:213:-14.6998,0,-27.5648	0/1:365:169,196:169:5918:196:6856:-507.197,0,-422.863	0/1:118:49,69:49:1694:69:2438:-184.151,0,-117.22	0/1:168:80,88:80:2796:88:3047:-223.888,0,-201.077	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:203:126,77:126:4475:77:2697:-181.861,0,-341.811	0/1:109:60,49:60:2108:49:1724:-122.63,0,-157.175	0/1:214:107,107:107:3780:107:3723:-270.852,0,-275.981	0/1:213:90,121:90:3090:121:4244:-318.328,0,-214.515	0/1:120:64,56:64:2230:56:1939:-138.658,0,-164.838	0/0:126:123,2:123:4299:2:72:0,-31.1519,-380.253	0/0:169:169,0:169:5925:0:0:0,-50.8741,-533.367	0/0:220:220,0:220:7750:0:0:0,-66.2266,-697.541	0/1:136:71,65:71:2516:65:2279:-164.43,0,-185.75	0/1:145:71,74:71:2484:74:2628:-193.116,0,-180.164	0/1:156:77,79:77:2734:79:2804:-205.638,0,-199.34	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:219:219,0:219:7767:0:0:0,-65.9256,-699.066	0/1:81:47,34:47:1660:34:1179:-82.0274,0,-125.301	0/1:23:13,10:13:452:10:356:-25.4576,0,-34.0874	0/1:157:72,85:72:2521:85:3004:-223.33,0,-179.878	0/1:70:39,31:39:1374:31:1078:-76.2531,0,-102.885	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3756	0/0:67:66,1:66:2302:1:36:0,-16.5707,-203.841	0/0:218:216,2:216:7620:2:72:0,-58.7878,-679.014	0/1:5:1,4:1:32:4:144:-11.8085,0,-1.69416	0/1:202:101,101:101:3602:101:3558:-259.619,0,-263.578	0/0:212:210,2:210:7354:2:72:0,-56.9816,-655.083	0/1:135:55,79:55:1941:79:2732:-205.422,0,-134.267	0/0:119:119,0:119:4121:0:0:0,-35.8226,-371.079	0/1:200:101,99:101:3586:99:3468:-252.125,0,-262.741	0/1:156:69,87:69:2457:87:3009:-223.917,0,-174.422	0/1:73:38,35:38:1329:35:1238:-89.7477,0,-97.9323	0/0:129:125,4:125:4435:4:144:0,-25.5193,-386.009	0/1:226:108,118:108:3805:118:4105:-301.605,0,-274.619	0/0:19:19,0:19:645:0:0:0,-5.71957,-58.367	0/1:86:48,38:48:1696:38:1314:-92.6664,0,-127.035	0/1:88:45,43:45:1593:43:1512:-109.88,0,-117.168	0/0:250:248,2:248:8664:2:72:0,-68.4208,-772.937	0/1:188:95,93:95:3370:93:3307:-241.253,0,-246.921	0/1:145:67,78:67:2361:78:2758:-204.811,0,-169.099	0/0:179:175,4:175:6224:4:144:0,-40.5707,-546.945	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:231:231,0:231:8182:0:0:0,-69.5379,-736.396	0/0:191:190,1:190:6758:1:32:0,-54.2974,-605.099	0/0:283:283,0:283:9950:0:0:0,-85.1915,-895.455	0/1:206:95,111:95:3289:111:3844:-284.145,0,-234.222	0/1:167:85,82:85:2973:82:2894:-210.426,0,-217.531	0/0:212:212,0:212:7367:0:0:0,-63.8184,-662.727	0/1:334:162,172:162:5672:172:6043:-443.436,0,-410.066	0/0:117:116,1:116:4039:1:36:0,-31.6222,-360.105	0/0:140:140,0:140:4888:0:0:0,-42.1442,-440.078	0/0:128:128,0:128:4486:0:0:0,-38.5318,-403.913	0/1:149:68,81:68:2397:81:2864:-213.143,0,-171.133	0/1:205:116,89:116:4063:89:3146:-221.654,0,-304.149	0/1:193:72,121:72:2503:121:4186:-318.808,0,-167.424	0/0:137:137,0:137:4821:0:0:0,-41.2411,-434.05	0/0:239:234,5:234:8170:5:180:0,-55.3941,-718.775
chr07	1278739	.	T	A	269786	PASS	AB=0.508103;ABP=7.51491;AC=136;AF=0.723404;AN=188;AO=10220;CIGAR=1X;DP=14137;DPB=14137;DPRA=0;EPP=22195.5;EPPR=8495.64;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9813;MQMR=59.9821;NS=94;NUMALT=1;ODDS=6.86305;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=362480;QR=138840;RO=3911;RPL=4621;RPP=206.237;RPPR=102.356;RPR=5599;RUN=1;SAF=4621;SAP=206.237;SAR=5599;SRF=1744;SRP=102.356;SRR=2167;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:18,12:18:640:12:432:-30.1903,0,-48.8984	0/1:236:97,139:97:3434:139:4890:-369.212,0,-238.23	0/1:186:101,85:101:3606:85:3029:-216.849,0,-268.754	0/1:253:121,132:121:4295:132:4690:-346.099,0,-310.57	1/1:114:3,111:3:89:111:3945:-346.94,-26.0131,0	1/1:82:1,81:1:36:81:2884:-256.197,-21.0862,0	0/1:181:86,95:86:3061:95:3402:-251.908,0,-221.232	1/1:251:0,251:0:0:251:8885:-799.64,-75.5585,0	1/1:121:0,121:0:0:121:4292:-386.461,-36.4246,0	0/1:131:70,61:70:2508:61:2180:-157.031,0,-186.537	1/1:139:0,139:0:0:139:4903:-441.427,-41.8432,0	0/1:176:81,95:81:2865:95:3355:-249.188,0,-205.106	0/1:171:81,90:81:2863:90:3133:-230.721,0,-206.433	0/1:156:70,86:70:2465:86:3064:-229.029,0,-175.143	1/1:140:0,140:0:0:140:5003:-450.418,-42.1442,0	0/1:145:79,66:79:2820:66:2355:-168.559,0,-210.39	0/1:180:79,101:79:2816:101:3568:-267.144,0,-199.495	0/1:159:89,70:89:3155:70:2495:-176.938,0,-236.313	1/1:111:2,109:2:72:109:3848:-339.682,-26.5776,0	1/1:195:0,195:0:0:195:6969:-627.274,-58.7009,0	1/1:215:0,215:0:0:215:7579:-682.162,-64.7215,0	0/1:71:49,21:49:1751:21:752:-46.5744,0,-136.442	0/1:90:43,47:43:1509:47:1646:-121.332,0,-109.008	0/1:150:66,84:66:2340:84:2973:-222.65,0,-165.706	0/1:77:44,33:44:1557:33:1169:-82.336,0,-117.24	1/1:403:2,401:2:72:401:14227:-1273.36,-114.478,0	1/1:295:1,294:1:36:294:10452:-937.005,-85.2056,0	1/1:85:0,85:0:0:85:3012:-271.313,-25.5876,0	0/1:240:105,135:105:3742:135:4803:-360.178,0,-264.733	0/1:176:70,106:70:2488:106:3787:-287.99,0,-171.19	1/1:200:0,200:0:0:200:7044:-634.032,-60.206,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:25:1,24:1:36:24:860:-74.1236,-3.92748,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:7:0,7:0:0:7:238:-21.752,-2.10721,0	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/1:358:183,175:183:6516:175:6216:-451.771,0,-478.757	0/1:125:71,54:71:2532:54:1936:-136.888,0,-190.503	0/1:174:91,83:91:3239:83:2919:-210.495,0,-239.353	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:200:75,125:75:2666:125:4404:-336.326,0,-179.979	0/1:108:48,60:48:1720:60:2140:-160.357,0,-122.574	0/1:211:103,108:103:3672:108:3856:-283.719,0,-267.038	0/1:212:118,94:118:4180:94:3311:-234.391,0,-312.566	0/1:122:59,63:59:2085:63:2241:-165.228,0,-151.193	1/1:136:1,135:1:32:135:4761:-425.453,-37.7408,0	1/1:177:0,177:0:0:177:6270:-564.397,-53.2823,0	1/1:224:0,224:0:0:224:8008:-720.743,-67.4307,0	0/1:137:65,72:65:2288:72:2572:-190.489,0,-164.939	0/1:154:75,79:75:2688:79:2793:-205.252,0,-195.806	0/1:155:76,79:76:2695:79:2796:-205.22,0,-196.136	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:224:0,224:0:0:224:7943:-714.897,-67.4307,0	0/1:82:35,47:35:1252:47:1684:-127.162,0,-88.3006	0/1:24:11,13:11:396:13:460:-34.5107,0,-28.758	0/1:158:83,75:83:2958:75:2680:-193.883,0,-218.89	0/1:75:33,42:33:1184:42:1465:-109.562,0,-84.2911	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:74:1,73:1:36:73:2565:-227.503,-18.6779,0	1/1:222:1,221:1:36:221:7866:-704.374,-63.2304,0	0/1:7:6,1:6:208:1:36:-1.49107,0,-16.9519	0/1:209:103,106:103:3643:106:3742:-274.064,0,-265.158	1/1:225:2,223:2:72:223:7886:-702.933,-60.895,0	0/1:131:76,55:76:2683:55:1960:-137.241,0,-202.279	1/1:130:0,130:0:0:130:4627:-416.596,-39.1339,0	0/1:208:99,109:99:3532:109:3863:-285.251,0,-255.476	0/1:159:86,73:86:3046:73:2612:-187.464,0,-225.485	0/1:74:35,39:35:1248:39:1368:-101.142,0,-90.3486	1/1:135:4,130:4:136:130:4636:-404.825,-28.1183,0	0/1:225:112,113:112:3980:113:3999:-292.333,0,-290.662	1/1:21:0,21:0:0:21:725:-65.5677,-6.32163,0	0/1:90:35,55:35:1209:55:1948:-148.501,0,-82.0154	0/1:95:42,53:42:1481:53:1889:-141.689,0,-104.985	1/1:267:0,267:0:0:267:9442:-849.753,-80.375,0	0/1:188:88,100:88:3101:100:3567:-264.643,0,-222.723	0/1:149:77,72:77:2716:72:2532:-183.267,0,-199.83	1/1:183:4,179:4:144:179:6355:-558.73,-41.7749,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:239:0,239:0:0:239:8454:-760.859,-71.9462,0	1/1:210:0,210:0:0:210:7470:-672.348,-63.2163,0	1/1:290:1,289:1:36:289:10252:-919.017,-83.7004,0	0/1:203:106,97:106:3780:97:3407:-245.738,0,-279.291	0/1:173:86,87:86:3019:87:3095:-226.699,0,-219.864	1/1:221:0,221:0:0:221:7822:-704.001,-66.5276,0	0/1:333:173,159:173:6148:159:5635:-407.063,0,-453.213	1/1:117:0,117:0:0:117:4150:-373.685,-35.2205,0	1/1:144:0,144:0:0:144:5083:-457.619,-43.3483,0	1/1:135:1,132:1:36:132:4690:-418.664,-36.7985,0	0/1:146:78,67:78:2788:67:2369:-169.46,0,-207.152	0/1:206:88,118:88:3100:118:4175:-313.921,0,-217.216	0/1:181:109,72:109:3871:72:2553:-175.533,0,-294.056	1/1:149:0,149:0:0:149:5309:-477.944,-44.8535,0	1/1:240:4,236:4:144:236:8395:-742.244,-58.9336,0
chr07	1278772	.	G	C	124536	PASS	AB=0.49277;ABP=5.08281;AC=137;AF=0.728723;AN=188;AO=6073;CIGAR=1X;DP=8412;DPB=8412;DPRA=0;EPP=13190.4;EPPR=5073.4;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9779;MQMR=59.9803;NS=94;NUMALT=1;ODDS=2.85598;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215731;QR=83483;RO=2335;RPL=6073;RPP=13190.4;RPPR=5073.4;RPR=0;RUN=1;SAF=0;SAP=13190.4;SAR=6073;SRF=0;SRP=5073.4;SRR=2335;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:12,11:12:428:11:373:-26.9716,0,-31.9351	0/1:129:56,73:56:2004:73:2590:-194.513,0,-141.801	0/1:119:58,61:58:2041:61:2128:-155.959,0,-148.138	0/1:154:79,75:79:2832:75:2651:-192.474,0,-208.76	1/1:69:2,67:2:72:67:2397:-209.148,-13.9343,0	1/1:52:1,51:1:32:51:1817:-160.61,-12.4542,0	0/1:92:42,50:42:1504:50:1767:-131.616,0,-107.96	1/1:189:0,189:0:0:189:6674:-600.735,-56.8947,0	1/1:111:0,111:0:0:111:3923:-353.261,-33.4143,0	0/1:62:32,30:32:1148:30:1072:-78.1286,0,-84.966	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	0/1:102:54,48:54:1914:48:1683:-121.045,0,-141.831	0/1:117:57,60:57:2048:60:2160:-159.446,0,-149.371	0/1:89:42,47:42:1508:47:1692:-125.775,0,-109.223	1/1:89:0,89:0:0:89:3178:-286.242,-26.7917,0	0/1:79:49,30:49:1747:30:1076:-73.3715,0,-133.732	0/1:111:49,62:49:1752:62:2194:-164.308,0,-124.55	0/1:92:57,35:57:2044:35:1256:-85.6505,0,-156.537	1/1:54:1,52:1:36:52:1864:-164.441,-12.7161,0	1/1:93:0,93:0:0:93:3321:-299.107,-27.9958,0	1/1:175:0,175:0:0:175:6197:-557.826,-52.6803,0	0/1:31:19,12:19:680:12:432:-29.8893,0,-52.1972	0/1:74:29,45:29:1036:45:1563:-118.678,0,-71.2777	0/1:104:52,52:52:1868:52:1856:-136.013,0,-137.092	0/1:40:28,12:28:996:12:432:-27.18,0,-77.9137	1/1:224:1,222:1:32:222:7915:-709.154,-64.2703,0	1/1:180:0,180:0:0:180:6385:-574.737,-54.1854,0	1/1:55:0,55:0:0:55:1965:-177.123,-16.5567,0	0/1:103:50,53:50:1796:53:1889:-139.28,0,-130.916	0/1:121:51,70:51:1828:70:2497:-188.557,0,-128.376	1/1:166:0,166:0:0:166:5879:-529.221,-49.971,0	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:6:0,6:0:0:6:186:-17.0436,-1.80618,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:11:4,7:4:144:7:237:-18.3477,0,-10.0023	0/1:214:113,101:113:4052:101:3590:-258.885,0,-300.256	0/1:79:41,38:41:1476:38:1334:-96.5699,0,-109.355	0/1:88:46,42:46:1643:42:1481:-107.068,0,-121.667	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:109:36,73:36:1287:73:2607:-202.058,0,-83.3205	0/1:59:27,32:27:963:32:1114:-82.8024,0,-69.2252	0/1:123:79,44:79:2816:44:1576:-105.105,0,-216.597	0/1:151:87,64:87:3115:64:2288:-160.726,0,-235.12	0/1:65:36,29:36:1284:29:1029:-73.3542,0,-96.2965	1/1:113:1,112:1:36:112:3971:-353.98,-30.4181,0	1/1:99:0,99:0:0:99:3488:-314.125,-29.802,0	1/1:114:0,114:0:0:114:4066:-366.124,-34.3174,0	0/1:83:47,36:47:1665:36:1281:-90.6058,0,-125.15	0/1:109:53,56:53:1908:56:1992:-146.74,0,-139.185	0/1:57:31,26:31:1096:26:920:-65.9569,0,-81.7912	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:126:0,126:0:0:126:4488:-404.087,-37.9298,0	0/1:28:13,15:13:464:15:540:-40.5077,0,-33.6687	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:79:38,41:38:1360:41:1442:-106.29,0,-98.9192	0/1:42:15,27:15:536:27:945:-72.7184,0,-35.9316	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:16:0,16:0:0:16:557:-50.4556,-4.81648,0	1/1:44:0,44:0:0:44:1557:-140.42,-13.2453,0	1/1:129:1,128:1:32:128:4578:-408.982,-35.6336,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:111:57,54:57:2040:54:1921:-139.751,0,-150.458	1/1:128:1,127:1:36:127:4494:-401.028,-34.9336,0	0/1:59:36,23:36:1288:23:822:-56.5419,0,-98.4628	1/1:84:0,84:0:0:84:2997:-269.961,-25.2865,0	0/1:145:67,78:67:2388:78:2796:-208.228,0,-171.528	0/1:47:21,26:21:752:26:924:-69.3292,0,-53.8578	0/1:49:24,25:24:864:25:900:-66.5705,0,-63.3321	1/1:76:2,74:2:72:74:2637:-230.739,-16.0416,0	0/1:141:70,71:70:2485:71:2492:-182.053,0,-181.457	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	0/1:45:23,22:23:824:22:791:-57.9692,0,-60.937	0/1:55:21,34:21:756:34:1190:-90.8443,0,-51.8106	1/1:213:1,212:1:36:212:7412:-663.53,-60.5211,0	0/1:101:43,58:43:1536:58:2072:-156.346,0,-108.129	0/1:92:52,40:52:1860:40:1417:-100.123,0,-139.985	1/1:109:4,105:4:144:105:3728:-322.406,-19.4987,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:122:0,122:0:0:122:4326:-389.515,-36.7257,0	1/1:104:0,104:0:0:104:3667:-330.233,-31.3071,0	1/1:158:1,157:1:36:157:5589:-499.532,-43.9645,0	0/1:138:77,61:77:2760:61:2188:-155.644,0,-207.099	0/1:94:50,44:50:1777:44:1572:-113.475,0,-131.914	1/1:133:0,133:0:0:133:4764:-428.917,-40.037,0	0/1:209:111,98:111:3980:98:3510:-253.195,0,-295.475	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:100:0,99:0:0:99:3544:-318.957,-29.802,0	1/1:82:0,82:0:0:82:2929:-263.843,-24.6845,0	0/1:91:49,42:49:1752:42:1508:-108.621,0,-130.57	0/1:111:49,62:49:1755:62:2199:-164.76,0,-124.819	0/1:114:70,43:70:2507:43:1533:-103.887,0,-191.505	1/1:73:0,73:0:0:73:2560:-230.645,-21.9752,0	1/1:148:5,143:5:180:143:5114:-443.847,-28.0004,0
chr07	1293662	.	GAAAGAT	GCAAGAT,GCAAAGAT	118620	PASS	AB=0.531761,0.466352;ABP=30.8734,34.2822;AC=135,51;AF=0.725806,0.274194;AN=186;AO=4083,1486;CIGAR=1M1X5M,1M1I6M;DP=5575;DPB=5787.29;DPRA=0,1.14657;EPP=8869.13,3229.82;EPPR=0;GTI=1;LEN=1,1;MEANALT=1.63441,2.11321;MQM=59.8673,59.9556;MQMR=0;NS=93;NUMALT=2;ODDS=0.831695;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=146278,52696;QR=0;RO=0;RPL=0,0;RPP=8869.13,3229.82;RPPR=0;RPR=4083,1486;RUN=1,1;SAF=4083,1486;SAP=8869.13,3229.82;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,ins	GT:DP:AD:RO:QR:AO:QA:GL	1/2:14:0,6,8:0:0:6,8:203,288:-40.0339,-23.8592,-22.053,-16.5193,0,-14.1111	1/2:91:0,48,43:0:0:48,43:1720,1509:-263.439,-123.157,-108.707,-140.636,0,-127.692	1/2:62:0,38,24:0:0:38,24:1349,848:-179.33,-69.4149,-57.9758,-110.269,0,-103.044	1/2:109:0,60,48:0:0:60,48:2152,1693:-313.375,-137.845,-119.783,-175.526,0,-161.076	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/1:47:0,47,0:0:0:47,0:1692,0:-152.567,-14.1484,0,-152.567,-14.1484,-152.567	1/2:60:0,30,30:0:0:30,30:1060,1072:-173.543,-87.7616,-78.7307,-86.136,0,-77.1051	1/1:92:0,92,0:0:0:92,0:3292,0:-296.435,-27.6948,0,-296.435,-27.6948,-296.435	1/1:48:0,48,0:0:0:48,0:1720,0:-155.086,-14.4494,0,-155.086,-14.4494,-155.086	1/2:78:0,37,41:0:0:37,41:1328,1464:-228.039,-119.712,-108.574,-108.684,0,-96.3419	1/1:76:0,76,0:0:0:76,0:2732,0:-246.12,-22.8783,0,-246.12,-22.8783,-246.12	1/2:63:0,38,25:0:0:38,25:1356,880:-182.539,-71.992,-60.5528,-110.9,0,-103.375	1/2:76:0,33,43:0:0:33,43:1184,1521:-220.815,-124.237,-114.303,-96.9343,0,-83.99	1/2:109:0,55,54:0:0:55,54:1968,1921:-317.382,-156.9,-140.344,-160.838,0,-144.583	1/1:55:0,55,0:0:0:55,0:1980,0:-178.474,-16.5567,0,-178.474,-16.5567,-178.474	1/2:47:0,22,25:0:0:22,25:792,880:-136.619,-71.992,-65.3693,-64.983,0,-57.4573	1/2:85:0,33,51:0:0:33,51:1180,1809:-243.594,-147.377,-137.443,-96.2134,0,-80.8608	1/2:54:0,30,24:0:0:30,24:1075,860:-157.901,-70.4971,-61.4662,-87.7613,0,-80.5366	1/1:31:0,31,0:0:0:31,0:1112,0:-100.369,-9.33193,0,-100.369,-9.33193,-100.369	1/1:90:0,90,0:0:0:90,0:3216,0:-289.663,-27.0927,0,-289.663,-27.0927,-289.663	1/1:40:0,40,0:0:0:40,0:1432,0:-129.178,-12.0412,0,-129.178,-12.0412,-129.178	1/2:48:0,22,26:0:0:22,26:792,920:-139.912,-75.2903,-68.6676,-64.9784,0,-57.1516	1/2:16:0,6,10:0:0:6,10:216,352:-46.6354,-29.0079,-27.2017,-17.9843,0,-14.974	1/2:39:0,16,23:0:0:16,23:572,808:-112.759,-66.1164,-61.2999,-46.9969,0,-40.0733	1/2:16:0,14,2:0:0:14,2:500,72:-46.9969,-6.23466,-2.02024,-41.1218,0,-40.5197	1/1:188:0,188,0:0:0:188,0:6714,0:-604.334,-56.5936,0,-604.334,-56.5936,-604.334	1/1:100:0,100,0:0:0:100,0:3588,0:-323.126,-30.103,0,-323.126,-30.103,-323.126	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1529,-9.0309,0,-97.1529,-9.0309,-97.1529	1/2:117:0,71,46:0:0:71,46:2525,1624:-338.106,-132.602,-111.228,-205.858,0,-192.011	1/2:93:0,50,43:0:0:50,43:1784,1528:-270.267,-124.869,-109.817,-145.754,0,-132.81	1/1:86:0,86,0:0:0:86,0:3084,0:-277.78,-25.8886,0,-277.78,-25.8886,-277.78	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:157:0,78,79:0:0:78,79:2804,2793:-456.592,-227.829,-204.349,-229.119,0,-205.337	1/2:120:0,90,30:0:0:90,30:3228,1072:-350.88,-87.5889,-60.4962,-263.648,0,-254.618	1/2:52:0,20,32:0:0:20,32:716,1148:-152.386,-93.9969,-87.9763,-58.7471,0,-49.1142	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:72:0,44,28:0:0:44,28:1580,980:-208.94,-80.0825,-66.8372,-129.21,0,-120.782	1/2:25:0,9,16:0:0:9,16:324,568:-73.0739,-46.6354,-43.9261,-26.7966,0,-21.9801	1/2:40:0,28,12:0:0:28,12:1008,417:-116.504,-34.2479,-25.819,-82.6075,0,-78.9952	1/2:54:0,29,25:0:0:29,25:1036,877:-156.19,-71.7194,-62.9896,-84.824,0,-77.2983	1/2:45:0,25,19:0:0:25,19:896,676:-128.167,-55.0888,-47.5631,-73.0748,0,-67.3553	1/1:37:0,37,0:0:0:37,0:1328,0:-119.736,-11.1381,0,-119.736,-11.1381,-119.736	1/1:59:0,59,0:0:0:59,0:2120,0:-191.066,-17.7608,0,-191.066,-17.7608,-191.066	1/1:85:0,85,0:0:0:85,0:3035,0:-273.109,-25.5876,0,-273.109,-25.5876,-273.109	1/2:50:0,26,24:0:0:26,24:936,856:-146.353,-70.1364,-62.3096,-76.5748,0,-69.3501	1/2:78:0,34,44:0:0:34,44:1212,1576:-227.68,-128.886,-118.651,-99.1513,0,-85.906	1/2:65:0,43,22:0:0:43,22:1532,746:-185.713,-60.8289,-47.8846,-125.229,0,-118.606	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:83:0,83,0:0:0:83,0:2980,0:-268.432,-24.9855,0,-268.432,-24.9855,-268.432	1/2:17:0,14,3:0:0:14,3:500,108:-49.9345,-9.17208,-4.95766,-41.1218,0,-40.2187	1/2:17:0,3,13:0:0:3,13:108,456:-45.952,-37.1377,-36.2346,-8.84217,0,-4.92878	1/2:59:0,30,29:0:0:30,29:1076,1040:-172.948,-85.1845,-76.1536,-88.122,0,-79.3921	1/2:12:0,8,4:0:0:8,4:288,144:-35.4502,-12.1095,-9.70126,-23.6998,0,-22.4957	.:.:.:.:.:.:.:.	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chr07	1293701	.	TAGA	GAGA	83738.3	PASS	AB=0.514939;ABP=9.36848;AC=135;AF=0.725806;AN=186;AO=4076;CIGAR=1X3M;DP=5684;DPB=5683.5;DPRA=0;EPP=8853.93;EPPR=3420.93;GTI=0;LEN=1;MEANALT=1.22581;MQM=59.9151;MQMR=59.9298;NS=93;NUMALT=1;ODDS=1.2307;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145645;QR=55596;RO=1582;RPL=4076;RPP=8853.93;RPPR=3420.93;RPR=0;RUN=1;SAF=4076;SAP=8853.93;SAR=0;SRF=1582;SRP=3438.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:9,5:9:310:5:180:-12.1203,0,-23.8133	0/1:95:44,50:44:1559:50:1792:-132.906,0,-111.945	0/1:66:26,39:26:923:39:1396:-106.11,0,-63.5572	0/1:110:51,59:51:1786:59:2092:-155.434,0,-127.907	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:46:0,46:0:0:46:1642:-148.068,-13.8474,0	0/1:60:31,29:31:1092:29:1011:-72.6941,0,-80.5275	1/1:92:1,91:1:36:91:3259:-289.903,-24.0965,0	1/1:52:0,52:0:0:52:1868:-168.396,-15.6536,0	0/1:84:44,39:44:1562:39:1388:-99.8739,0,-115.527	1/1:80:0,79:0:0:79:2819:-253.588,-23.7814,0	0/1:65:25,40:25:873:40:1421:-108.618,0,-59.3192	0/1:80:46,34:46:1629:34:1207:-84.8529,0,-122.815	0/1:109:54,54:54:1887:54:1931:-141.195,0,-137.222	1/1:55:0,54:0:0:54:1940:-174.536,-16.2556,0	0/1:46:24,22:24:846:22:788:-57.3974,0,-62.6117	0/1:86:54,32:54:1894:32:1131:-76.2082,0,-144.849	0/1:56:27,29:27:951:29:1044:-77.4171,0,-69.0463	1/1:31:0,31:0:0:31:1112:-100.369,-9.33193,0	1/1:90:0,87:0:0:87:3113:-280.035,-26.1896,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:47:26,21:26:920:21:756:-54.2142,0,-68.9687	0/1:19:11,8:11:377:8:288:-20.5478,0,-28.5392	0/1:41:25,16:25:885:16:576:-39.8328,0,-67.6261	0/1:17:3,14:3:107:14:500:-40.2187,0,-4.83496	1/1:188:0,186:0:0:186:6667:-599.756,-55.9916,0	1/1:101:0,100:0:0:100:3588:-322.925,-30.103,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:125:52,73:52:1828:73:2611:-197.609,0,-127.171	0/1:94:43,50:43:1486:50:1783:-132.358,0,-105.674	1/1:82:0,81:0:0:81:2893:-260.237,-24.3834,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:162:83,79:83:2951:79:2832:-206.352,0,-217.059	0/1:125:35,89:35:1201:89:3179:-248.644,0,-70.62	0/1:57:35,22:35:1226:22:779:-53.2734,0,-93.4837	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:71:28,43:28:988:43:1531:-116.673,0,-67.8587	0/1:25:17,8:17:599:8:284:-18.3776,0,-46.7131	0/1:42:12,29:12:417:29:1040:-81.2123,0,-25.1603	0/1:56:27,25:27:950:25:900:-65.3076,0,-69.8012	0/1:48:24,24:24:843:24:856:-62.9117,0,-61.7393	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:60:0,60:0:0:60:2134:-192.325,-18.0618,0	1/1:87:0,87:0:0:87:3088:-278.075,-26.1896,0	0/1:49:24,25:24:846:25:900:-66.5705,0,-61.7087	0/1:83:47,36:47:1637:36:1288:-91.2381,0,-122.63	0/1:71:26,44:26:882:44:1538:-117.334,0,-58.3138	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:84:0,84:0:0:84:2998:-270.051,-25.2865,0	0/1:18:4,14:4:143:14:504:-40.2796,0,-7.8029	0/1:17:14,3:14:485:3:99:-4.11907,0,-38.8606	0/1:60:31,29:31:1080:29:1027:-74.6804,0,-79.4467	0/1:13:5,8:5:173:8:288:-22.3458,0,-11.9962	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:41:0,41:0:0:41:1476:-133.122,-12.3422,0	1/1:123:1,122:1:36:122:4377:-390.504,-33.4284,0	0/1:4:2,2:2:65:2:72:-5.6326,0,-4.96891	0/1:102:47,55:47:1645:55:1962:-146.134,0,-117.63	1/1:155:2,152:2:71:152:5444:-483.342,-39.9747,0	0/1:76:34,42:34:1199:42:1500:-112.416,0,-85.3368	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	0/1:76:30,46:30:1063:46:1640:-125.01,0,-73.1034	0/1:68:41,26:41:1437:26:928:-63.3095,0,-109.097	0/1:28:22,6:22:782:6:216:-11.3617,0,-62.2752	1/1:26:1,25:1:35:25:891:-77.0101,-4.32815,0	0/1:106:56,50:56:1974:50:1782:-128.752,0,-146.023	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:57:25,32:25:871:32:1152:-86.8314,0,-61.5462	0/1:39:19,20:19:665:20:716:-53.0275,0,-48.4342	1/1:119:0,119:0:0:119:4229:-380.689,-35.8226,0	0/1:82:38,44:38:1336:44:1576:-117.447,0,-95.8468	0/1:49:19,30:19:671:30:1076:-82.4024,0,-45.9661	1/1:98:0,98:0:0:98:3507:-315.795,-29.5009,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:58:0,58:0:0:58:2055:-185.214,-17.4597,0	1/1:101:0,101:0:0:101:3602:-324.385,-30.404,0	0/1:96:40,56:40:1422:56:1994:-150.829,0,-99.3783	0/1:74:44,30:44:1553:30:1080:-75.237,0,-117.786	1/1:79:0,79:0:0:79:2816:-253.677,-23.7814,0	0/1:108:53,55:53:1881:55:1972:-145.235,0,-137.058	1/1:37:1,36:1:36:36:1288:-112.625,-7.53984,0	1/1:72:0,72:0:0:72:2579:-232.359,-21.6742,0	1/1:62:0,61:0:0:61:2180:-196.106,-18.3628,0	0/1:55:28,27:28:977:27:947:-68.9871,0,-71.6848	0/1:92:40,51:40:1414:51:1828:-137.047,0,-99.7932	0/1:51:30,21:30:1055:21:756:-53.0147,0,-79.9073	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:90:0,90:0:0:90:3215:-289.537,-27.0927,0
chr07	1296325	.	AGC	CGA,CGC	71753.5	PASS	AB=0.590802,0.405913;ABP=155.624,166.865;AC=137,49;AF=0.736559,0.263441;AN=186;AO=3084,874;CIGAR=1X1M1X,1X2M;DP=3967;DPB=3967;DPRA=10.769,1.06597;EPP=6699.83,1900.88;EPPR=7.35324;GTI=3;LEN=3,1;MEANALT=1.61957,2.07843;MQM=34.0603,59.3696;MQMR=54.5;NS=93;NUMALT=2;ODDS=1.24437;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=107641,31073;QR=65;RO=2;RPL=0,0;RPP=6699.83,1900.88;RPPR=7.35324;RPR=3084,874;RUN=1,1;SAF=3084,874;SAP=6699.83,1900.88;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:9:0,5,4:0:0:5,4:180,140:-24.829,-11.7405,-10.2353,-13.4272,0,-12.2231	1/2:25:0,11,14:0:0:11,14:386,504:-69.2885,-41.4837,-38.1723,-28.1393,0,-23.9249	1/2:43:0,29,14:0:0:29,14:1001,504:-114.857,-41.4837,-32.7538,-73.7185,0,-69.5041	1/2:74:0,49,25:0:0:49,25:1709,884:-192.809,-72.3242,-57.5737,-120.822,0,-113.297	1/1:15:0,14,0:0:0:14,0:471,0:-39.2057,-4.21442,0,-39.2057,-4.21442,-39.2057	1/1:15:0,15,0:0:0:15,0:513,0:-41.7685,-4.51545,0,-41.7685,-4.51545,-41.7685	1/2:20:0,12,8:0:0:12,8:422,288:-54.2477,-23.8592,-20.2468,-30.7305,0,-28.3223	1/1:42:0,42,0:0:0:42,0:1480,0:-119.882,-12.6433,0,-119.882,-12.6433,-119.882	1/1:21:0,21,0:0:0:21,0:722,0:-58.9991,-6.32163,0,-58.9991,-6.32163,-58.9991	1/2:27:0,17,10:0:0:17,10:558,356:-69.8209,-29.3577,-24.2402,-40.7976,0,-37.7873	1/1:47:0,47,0:0:0:47,0:1644,0:-132.245,-14.1484,0,-132.245,-14.1484,-132.245	1/2:84:0,58,25:0:0:58,25:2028,883:-218.602,-71.8526,-54.3929,-146.765,0,-139.24	1/2:53:0,33,20:0:0:33,20:1164,703:-142.238,-57.5725,-47.6385,-85.0046,0,-78.984	1/2:45:0,35,10:0:0:35,10:1223,352:-117.879,-28.9962,-18.4602,-89.2264,0,-86.2161	1/1:82:0,82,0:0:0:82,0:2873,0:-227.912,-24.6845,0,-227.912,-24.6845,-227.912	1/2:39:0,24,15:0:0:24,15:825,536:-104.7,-44.0308,-36.8061,-61.0094,0,-56.494	1/2:39:0,27,12:0:0:27,12:950,428:-102.811,-35.2464,-27.1186,-67.9068,0,-64.2945	1/2:23:0,12,11:0:0:12,11:428,392:-63.6054,-32.3087,-28.6964,-31.6372,0,-28.3258	1/1:19:0,19,0:0:0:19,0:652,0:-53.9087,-5.71957,0,-53.9087,-5.71957,-53.9087	1/1:36:0,36,0:0:0:36,0:1249,0:-99.4091,-10.8371,0,-99.4091,-10.8371,-99.4091	1/1:61:0,61,0:0:0:61,0:2123,0:-171.938,-18.3628,0,-171.938,-18.3628,-171.938	1/2:47:1,29,17:1:29:29,17:992,608:-117.769,-47.3399,-40.9113,-68.4739,0,-65.661	1/1:42:0,39,3:0:0:39,3:1342,104:-107.848,-11.7402,0,-99.3925,-2.94046,-98.4894	1/1:12:0,12,0:0:0:12,0:415,0:-34.4597,-3.61236,0,-34.4597,-3.61236,-34.4597	1/2:17:0,10,7:0:0:10,7:355,248:-46.4821,-20.5282,-17.5179,-26.2945,0,-24.1873	1/1:92:0,92,0:0:0:92,0:3205,0:-257.039,-27.6948,0,-257.039,-27.6948,-257.039	1/1:41:0,41,0:0:0:41,0:1451,0:-116.971,-12.3422,0,-116.971,-12.3422,-116.971	1/1:36:0,36,0:0:0:36,0:1271,0:-104.007,-10.8371,0,-104.007,-10.8371,-104.007	1/2:66:0,56,10:0:0:56,10:1961,360:-168.51,-29.734,-12.8763,-139.128,0,-136.118	1/2:78:0,58,20:0:0:58,20:1982,708:-202.117,-57.9965,-40.5368,-144.463,0,-138.443	1/1:62:0,62,0:0:0:62,0:2140,0:-171.339,-18.6639,0,-171.339,-18.6639,-171.339	1/1:4:0,4,0:0:0:4,0:142,0:-11.9183,-1.20412,0,-11.9183,-1.20412,-11.9183	1/1:4:0,4,0:0:0:4,0:144,0:-12.0108,-1.20412,0,-12.0108,-1.20412,-12.0108	.:.:.:.:.:.:.:.	1/1:2:0,2,0:0:0:2,0:72,0:-6.1677,-0.60206,0,-6.1677,-0.60206,-6.1677	1/2:11:0,5,6:0:0:5,6:178,212:-29.7379,-17.6186,-16.1135,-12.4453,0,-10.6391	1/2:139:0,94,45:0:0:94,45:3311,1577:-365.353,-128.615,-100.318,-237.076,0,-223.53	1/2:42:0,34,8:0:0:34,8:1179,288:-110.522,-23.8305,-13.5954,-87.043,0,-84.6348	1/2:38:0,19,18:0:0:19,18:653,648:-99.408,-52.9633,-47.2438,-46.563,0,-41.1445	1/1:1:0,1,0:0:0:1,0:34,0:-3.14617,-0.30103,0,-3.14617,-0.30103,-3.14617	1/2:38:0,24,14:0:0:24,14:850,492:-100.962,-40.3694,-33.1447,-60.9296,0,-56.7152	1/2:34:0,24,10:0:0:24,10:837,360:-90.0091,-29.7294,-22.5046,-60.6257,0,-57.6154	1/2:41:0,27,14:0:0:27,14:950,504:-110.281,-41.4837,-33.3559,-69.1426,0,-64.9282	1/2:48:0,28,20:0:0:28,20:972,692:-125.472,-56.5457,-48.1169,-69.2558,0,-63.2352	1/2:37:0,23,14:0:0:23,14:812,504:-99.6146,-41.4551,-34.5314,-58.502,0,-54.2876	1/1:36:0,36,0:0:0:36,0:1240,0:-100.032,-10.8371,0,-100.032,-10.8371,-100.032	1/1:38:0,38,0:0:0:38,0:1295,0:-107.325,-11.4391,0,-107.325,-11.4391,-107.325	1/1:71:0,71,0:0:0:71,0:2507,0:-197.793,-21.3731,0,-197.793,-21.3731,-197.793	1/2:28:0,19,9:0:0:19,9:664,324:-74.6922,-26.7966,-21.077,-48.2406,0,-45.5313	1/2:56:0,35,20:0:0:35,20:1228,704:-144.59,-57.3427,-46.8066,-87.2638,0,-81.2432	1/1:23:0,22,1:0:0:22,1:764,36:-61.2781,-6.62266,0,-58.3385,-3.32542,-58.0374	1/1:11:0,11,0:0:0:11,0:394,0:-31.8489,-3.31133,0,-31.8489,-3.31133,-31.8489	1/1:53:0,53,0:0:0:53,0:1845,0:-147.361,-15.9546,0,-147.361,-15.9546,-147.361	1/2:27:0,22,5:0:0:22,5:756,176:-68.8186,-14.6799,-8.05721,-54.4822,0,-52.9771	1/2:5:0,1,4:0:0:1,4:34,144:-14.631,-12.1095,-11.8085,-2.84514,0,-1.64102	1/2:37:0,19,18:0:0:19,18:663,636:-99.8103,-52.1495,-46.4299,-47.9941,0,-42.5756	1/2:10:0,8,2:0:0:8,2:284,72:-26.4622,-6.23466,-3.82642,-20.5783,0,-19.9763	1/2:6:0,3,3:0:0:3,3:106,108:-16.7739,-9.17208,-8.26899,-7.93959,0,-7.0365	1/1:5:0,5,0:0:0:5,0: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chr07	1296336	.	A	G	13393	PASS	AB=0.420136;ABP=117.47;AC=49;AF=0.266304;AN=184;AO=877;CIGAR=1X;DP=3799;DPB=3799;DPRA=1.06746;EPP=1898.72;EPPR=6345.88;GTI=2;LEN=1;MEANALT=1.01961;MQM=59.3033;MQMR=34.1075;NS=92;NUMALT=1;ODDS=0.0757138;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31337;QR=103836;RO=2921;RPL=1;RPP=1898.72;RPPR=6345.88;RPR=876;RUN=1;SAF=877;SAP=1907.39;SAR=0;SRF=2921;SRP=6345.88;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:5,3:5:180:3:108:-7.66693,0,-12.5241	0/1:23:9,14:9:320:14:504:-38.7744,0,-19.5403	0/1:43:29,14:29:1002:14:504:-32.7538,0,-69.3638	0/1:72:47,25:47:1679:25:900:-59.5486,0,-109.868	0/0:13:13,0:13:453:0:0:0,-3.91339,-37.493	0/0:14:14,0:14:500:0:0:0,-4.21442,-40.1469	0/1:19:11,8:11:396:8:288:-20.5478,0,-26.1567	0/0:40:40,0:40:1428:0:0:0,-12.0412,-114.799	0/0:21:21,0:21:748:0:0:0,-6.32163,-60.5023	0/1:25:15,10:15:540:10:356:-24.8539,0,-35.9321	0/0:47:47,0:47:1680:0:0:0,-14.1484,-133.989	0/1:81:58,23:58:2055:23:824:-49.942,0,-141.932	0/1:53:33,20:33:1184:20:712:-48.4517,0,-79.7065	0/1:45:34,11:34:1208:11:388:-21.6994,0,-84.4337	0/0:77:77,0:77:2772:0:0:0,-23.1793,-218.463	0/1:37:23,14:23:820:14:500:-34.1695,0,-56.0622	0/1:36:24,12:24:860:12:432:-28.3841,0,-57.3683	0/1:22:11,11:11:396:11:392:-28.9974,0,-25.887	0/0:18:18,0:18:636:0:0:0,-5.41854,-52.3558	0/0:33:33,0:33:1168:0:0:0,-9.93399,-92.4999	0/0:57:57,0:57:2005:0:0:0,-17.1587,-162.613	0/1:43:27,16:27:968:16:576:-39.213,0,-64.6929	0/0:39:36,3:36:1284:3:104:0,-2.03736,-92.9448	0/0:10:10,0:10:352:0:0:0,-3.0103,-29.1351	0/1:18:10,7:10:360:7:252:-17.545,0,-24.0888	0/0:87:87,0:87:3120:0:0:0,-26.1896,-247.672	0/0:38:38,0:38:1356:0:0:0,-11.4391,-108.995	0/0:34:34,0:34:1204:0:0:0,-10.235,-98.5273	0/1:64:54,10:54:1904:10:360:-13.4784,0,-131.987	0/1:72:53,19:53:1885:19:676:-39.4654,0,-129.704	0/0:56:56,0:56:1977:0:0:0,-16.8577,-156.599	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.0108	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.08924	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.1677	0/1:11:5,6:5:180:6:216:-16.4792,0,-10.7311	0/1:134:89,45:89:3180:45:1609:-104.758,0,-212.734	0/1:38:29,9:29:1032:9:324:-18.038,0,-73.0072	0/1:37:19,18:19:676:18:648:-47.4568,0,-42.54	.:.:.:.:.:.:.:.	0/1:38:24,14:24:849:14:500:-33.8685,0,-56.3718	0/1:30:20,10:20:716:10:356:-23.3457,0,-48.5261	0/1:39:25,14:25:888:14:500:-33.596,0,-60.0752	0/1:46:26,20:26:932:20:711:-50.4337,0,-60.1126	0/1:37:23,14:23:816:14:504:-34.5314,0,-54.622	0/0:36:36,0:36:1273:0:0:0,-10.8371,-101.479	0/0:36:36,0:36:1284:0:0:0,-10.8371,-104.993	0/0:68:68,0:68:2432:0:0:0,-20.47,-190.807	0/1:26:17,9:17:589:9:316:-20.9521,0,-39.896	0/1:53:33,20:33:1175:20:716:-48.8122,0,-77.3195	0/0:22:21,1:21:748:1:36:0,-3.02438,-56.1527	0/0:11:11,0:11:396:0:0:0,-3.31133,-31.9295	0/0:53:53,0:53:1866:0:0:0,-15.9546,-148.403	0/1:26:21,5:21:748:5:172:-7.99119,0,-51.6264	0/1:5:1,4:1:36:4:144:-11.8085,0,-1.74101	0/1:36:18,18:18:648:18:648:-47.8148,0,-41.1994	0/1:9:7,2:7:252:2:72:-4.12745,0,-17.5698	0/1:6:3,3:3:108:3:108:-8.26899,0,-7.11917	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.7942	0/0:30:30,0:30:1072:0:0:0,-9.0309,-86.8689	0/0:75:75,0:75:2684:0:0:0,-22.5772,-213.079	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:172:44,128:44:1561:128:4553:-357.822,0,-71.179	0/0:103:103,0:103:3619:0:0:0,-31.0061,-289.233	0/1:17:6,11:6:212:11:392:-30.5025,0,-12.5324	0/0:36:35,1:35:1248:1:36:0,-7.2388,-95.8743	0/1:48:41,7:41:1451:7:252:-8.54737,0,-101.834	0/1:39:14,25:14:492:25:896:-69.1917,0,-28.1985	0/1:38:16,22:16:552:22:792:-60.1574,0,-33.5437	0/0:11:11,0:11:392:0:0:0,-3.31133,-32.3074	0/1:28:18,10:18:640:10:356:-23.9238,0,-43.1673	0/0:12:12,0:12:428:0:0:0,-3.61236,-34.9079	0/1:19:11,8:11:396:8:284:-20.1551,0,-25.6885	0/1:59:14,45:14:495:45:1585:-125.094,0,-22.9057	0/0:43:43,0:43:1536:0:0:0,-12.9443,-122.833	0/1:58:26,32:26:928:32:1152:-86.5295,0,-56.0928	0/0:16:16,0:16:564:0:0:0,-4.81648,-46.5403	0/0:59:59,0:59:2077:0:0:0,-17.7608,-168.231	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.116	0/0:39:39,0:39:1392:0:0:0,-11.7402,-113.552	0/0:41:41,0:41:1460:0:0:0,-12.3422,-119.043	0/0:56:56,0:56:1972:0:0:0,-16.8577,-157.477	0/1:33:15,18:15:536:18:644:-48.3566,0,-32.1542	0/1:57:33,24:33:1184:24:855:-60.1114,0,-77.7576	0/0:49:49,0:49:1748:0:0:0,-14.7505,-140.33	0/1:90:58,32:58:2072:32:1152:-76.8974,0,-138.466	0/0:29:29,0:29:1013:0:0:0,-8.72987,-82.9799	0/0:71:71,0:71:2524:0:0:0,-21.3731,-203.889	0/0:87:87,0:87:3108:0:0:0,-26.1896,-250.088	0/1:47:32,15:32:1123:15:540:-34.7596,0,-75.286	0/1:72:40,32:40:1415:32:1140:-81.0108,0,-92.8393	0/1:57:26,31:26:916:31:1108:-82.7575,0,-56.3225	0/0:59:59,0:59:2089:0:0:0,-17.7608,-165.543	0/0:86:86,0:86:3061:0:0:0,-25.8886,-244.171
chr07	1296350	.	C	T	55539.4	PASS	AB=0.330337;ABP=1004.37;AC=130;AF=0.698925;AN=186;AO=3037;CIGAR=1X;DP=5896;DPB=5896;DPRA=7.1099;EPP=3542.74;EPPR=907.054;GTI=18;LEN=1;MEANALT=1;MQM=34.05;MQMR=46.2924;NS=93;NUMALT=1;ODDS=0.52457;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108845;QR=102373;RO=2859;RPL=2631;RPP=3542.74;RPPR=910.372;RPR=406;RUN=1;SAF=3037;SAP=6597.77;SAR=0;SRF=2858;SRP=6202.57;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:31,5:31:1108:5:180:-4.09525,0,-82.7913	0/1:50:39,11:39:1400:11:396:-16.5788,0,-106.334	0/1:118:91,27:91:3264:27:972:-43.8281,0,-242.865	0/1:177:129,48:129:4620:48:1719:-81.3094,0,-351.609	1/1:15:1,14:1:36:14:500:-37.3978,-0.942016,0	1/1:14:0,14:0:0:14:504:-40.3967,-4.21442,0	0/1:36:24,12:24:856:12:432:-23.908,0,-64.9053	1/1:41:1,40:1:36:40:1436:-112.773,-8.95463,0	1/1:20:0,20:0:0:20:716:-57.7818,-6.0206,0	0/1:58:42,16:42:1504:16:572:-28.6857,0,-114.671	1/1:48:0,48:0:0:48:1720:-137.097,-14.4494,0	0/1:111:53,58:53:1892:58:2084:-134.095,0,-131.285	0/1:64:31,33:31:1116:33:1188:-76.5961,0,-79.5825	0/1:55:22,33:22:792:33:1188:-79.3054,0,-53.2608	1/1:80:0,80:0:0:80:2876:-226.769,-24.0824,0	0/1:61:38,23:38:1355:23:828:-48.8467,0,-99.9152	0/1:48:22,26:22:788:26:925:-59.7414,0,-54.8897	0/1:25:13,12:13:464:12:432:-27.9054,0,-34.1893	1/1:18:0,18:0:0:18:648:-52.9603,-5.41854,0	1/1:36:0,36:0:0:36:1280:-101.288,-10.8371,0	1/1:60:2,58:2:72:58:2084:-160.257,-11.3617,0	0/1:128:99,29:99:3560:29:1030:-42.8386,0,-274.396	0/1:83:45,38:45:1603:38:1364:-82.9203,0,-113.982	0/1:39:28,11:28:1004:11:396:-20.7214,0,-73.3169	0/1:65:55,10:55:1972:10:360:-9.9731,0,-149.629	1/1:90:0,90:0:0:90:3236:-256.471,-27.0927,0	1/1:40:0,40:0:0:40:1436:-115.24,-12.0412,0	1/1:35:0,35:0:0:35:1260:-102.453,-10.5361,0	0/1:216:161,55:161:5772:55:1976:-90.4361,0,-444.185	0/1:139:83,56:83:2972:56:2004:-119.185,0,-217.012	1/1:59:0,59:0:0:59:2100:-166.032,-17.7608,0	1/1:4:0,4:0:0:4:144:-12.0108,-1.20412,0	1/1:4:0,4:0:0:4:144:-12.0108,-1.20412,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:59:-5.37689,-0.60206,0	0/1:36:31,5:31:1104:5:180:-3.20534,0,-84.2255	0/1:187:93,94:93:3339:94:3354:-211.229,0,-241.492	0/1:102:69,33:69:2472:33:1184:-65.8296,0,-180.182	0/1:45:25,20:25:896:20:716:-43.1585,0,-66.024	0/1:5:4,1:4:144:1:36:-1.74101,0,-11.2765	0/1:115:91,24:91:3260:24:860:-34.0429,0,-246.978	0/1:37:13,24:13:446:24:860:-57.9547,0,-28.8057	0/1:140:113,27:113:4037:27:959:-35.3249,0,-305.172	0/1:59:31,28:31:1108:28:1004:-61.9901,0,-80.6813	0/1:45:22,23:22:792:23:824:-52.5754,0,-56.3179	1/1:35:0,35:0:0:35:1260:-99.853,-10.5361,0	1/1:38:0,38:0:0:38:1360:-111.037,-11.4391,0	1/1:71:1,70:1:36:70:2504:-192.742,-17.8063,0	0/1:71:52,19:52:1864:19:680:-33.326,0,-143.059	0/1:115:79,36:79:2824:36:1296:-67.9546,0,-213.602	0/1:67:45,22:45:1608:22:788:-42.6319,0,-121.66	1/1:11:0,11:0:0:11:396:-31.9295,-3.31133,0	1/1:52:0,52:0:0:52:1868:-148.42,-15.6536,0	0/1:55:33,22:33:1171:22:788:-45.7876,0,-86.2517	0/0:13:12,1:12:432:1:36:0,-0.667231,-34.3637	0/1:96:77,19:77:2759:19:684:-26.0594,0,-210.305	0/1:35:27,8:27:968:8:288:-12.6122,0,-74.1856	0/1:12:9,3:9:320:3:108:-5.31299,0,-25.2233	1/1:5:0,5:0:0:5:180:-14.3259,-1.50515,0	1/1:30:0,30:0:0:30:1072:-86.6951,-9.0309,0	1/1:81:0,81:0:0:81:2908:-230.652,-24.3834,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.5238	0/1:190:144,46:144:5150:46:1648:-72.3403,0,-404.847	1/1:110:0,110:0:0:110:3944:-314.558,-33.1133,0	0/1:28:22,6:22:792:6:216:-9.42503,0,-61.0965	1/1:38:1,37:1:36:37:1323:-101.69,-7.84087,0	0/1:145:102,43:102:3648:43:1544:-78.6242,0,-273.443	0/0:160:146,14:146:5244:14:500:0,-7.86336,-420.123	0/1:48:31,17:31:1108:17:608:-34.4636,0,-84.4085	1/1:11:0,11:0:0:11:396:-32.5096,-3.31133,0	0/1:35:16,19:16:576:19:680:-44.1101,0,-41.2725	1/1:15:0,15:0:0:15:540:-44.0227,-4.51545,0	0/1:97:85,12:85:3052:12:432:-5.13054,0,-228.992	0/1:77:63,14:63:2264:14:495:-16.5441,0,-177.033	1/1:45:0,45:0:0:45:1605:-127.526,-13.5464,0	0/1:106:79,27:79:2836:27:956:-44.4537,0,-216.988	0/1:108:91,17:91:3260:17:612:-17.5754,0,-242.396	1/1:65:3,62:3:108:62:2228:-170.015,-10.0817,0	1/1:4:0,4:0:0:4:144:-11.116,-1.20412,0	1/1:40:1,39:1:36:39:1400:-110.499,-8.58671,0	1/1:43:0,43:0:0:43:1544:-125.633,-12.9443,0	1/1:57:0,57:0:0:57:2016:-160.302,-17.1587,0	0/1:48:31,17:31:1086:17:612:-33.5587,0,-82.5407	0/1:70:34,36:34:1212:36:1296:-81.811,0,-87.5004	1/1:49:0,49:0:0:49:1764:-141.051,-14.7505,0	0/1:111:52,59:52:1872:59:2124:-135.84,0,-133.621	1/1:30:0,30:0:0:30:1080:-87.7562,-9.0309,0	1/1:69:0,69:0:0:69:2465:-198.017,-20.7711,0	1/1:92:0,92:0:0:92:3308:-265.698,-27.6948,0	0/1:51:18,33:18:648:33:1175:-77.7271,0,-42.5593	0/1:88:48,40:48:1719:40:1436:-89.0021,0,-126.025	0/1:72:46,26:46:1636:26:936:-52.7311,0,-124.415	1/1:65:0,65:0:0:65:2321:-183.449,-19.567,0	1/1:87:0,87:0:0:87:3115:-246.561,-26.1896,0
chr07	1296356	.	G	A	45996.1	PASS	AB=0.333585;ABP=959.184;AC=130;AF=0.698925;AN=186;AO=3059;CIGAR=1X;DP=5883;DPB=5883;DPRA=7.0942;EPP=6628.18;EPPR=882.654;GTI=18;LEN=1;MEANALT=1.03261;MQM=34.0608;MQMR=46.3297;NS=93;NUMALT=1;ODDS=0.571125;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109521;QR=100683;RO=2821;RPL=3057;RPP=6628.18;RPPR=885.948;RPR=2;RUN=1;SAF=3059;SAP=6645.54;SAR=0;SRF=2820;SRP=6120.05;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:32,5:32:1133:5:180:-3.79422,0,-84.5784	0/1:49:39,10:39:1404:10:360:-14.8377,0,-106.995	0/1:120:91,29:91:3257:29:1044:-48.8293,0,-241.572	0/1:174:125,49:125:4445:49:1756:-85.4205,0,-337.598	1/1:15:0,15:0:0:15:540:-44.3914,-4.51545,0	1/1:15:0,15:0:0:15:540:-43.3187,-4.51545,0	0/1:34:23,11:23:816:11:396:-21.6412,0,-62.3791	1/1:43:1,42:1:36:42:1489:-117.413,-9.55669,0	1/1:20:0,20:0:0:20:720:-57.9832,-6.0206,0	0/1:59:42,17:42:1493:17:608:-31.2536,0,-113.118	1/1:47:0,47:0:0:47:1684:-134.228,-14.1484,0	0/1:110:51,59:51:1828:59:2116:-137.157,0,-125.762	0/1:63:30,33:30:1076:33:1186:-76.8864,0,-76.2845	0/1:57:22,35:22:788:35:1256:-84.3457,0,-52.3148	1/1:82:0,82:0:0:82:2933:-231.044,-24.6845,0	0/1:61:37,24:37:1328:24:864:-52.0642,0,-97.399	0/1:48:21,27:21:744:27:972:-62.6622,0,-51.3258	0/1:25:13,12:13:468:12:432:-27.9054,0,-34.5514	1/1:18:0,18:0:0:18:648:-52.9603,-5.41854,0	1/1:36:0,36:0:0:36:1284:-101.601,-10.8371,0	1/1:62:2,60:2:72:60:2156:-166.1,-11.9637,0	0/1:124:95,29:95:3382:29:1006:-43.1909,0,-259.581	0/1:83:45,38:45:1604:38:1356:-83.4766,0,-114.305	0/1:39:28,11:28:995:11:396:-20.7214,0,-71.9035	0/1:65:55,10:55:1968:10:360:-9.9731,0,-149.312	1/1:91:0,91:0:0:91:3248:-257.737,-27.3937,0	1/1:40:0,40:0:0:40:1410:-113.341,-12.0412,0	1/1:36:0,36:0:0:36:1288:-104.973,-10.8371,0	0/1:214:158,56:158:5620:56:2008:-93.8736,0,-431.857	0/1:140:83,57:83:2972:57:2025:-120.584,0,-216.911	1/1:61:0,61:0:0:61:2188:-172.408,-18.3628,0	1/1:4:0,4:0:0:4:144:-12.0108,-1.20412,0	1/1:4:0,4:0:0:4:140:-11.805,-1.20412,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:68:-5.95632,-0.60206,0	0/1:36:31,5:31:1116:5:180:-3.20534,0,-84.9974	0/1:183:89,94:89:3187:94:3366:-213.014,0,-229.189	0/1:103:68,34:68:2391:34:1205:-67.3454,0,-174.969	0/1:44:23,20:23:824:20:720:-43.4332,0,-60.0109	0/1:5:4,1:4:144:1:36:-1.74101,0,-11.2765	0/1:116:92,24:92:3233:24:864:-33.943,0,-244.59	0/1:37:13,24:13:468:24:849:-57.2065,0,-30.7949	0/1:136:111,24:111:3961:24:860:-28.4219,0,-301.071	0/1:58:30,28:30:1065:28:1008:-62.4718,0,-77.1248	0/1:45:22,23:22:788:23:809:-51.5728,0,-56.2842	1/1:35:0,35:0:0:35:1226:-97.6705,-10.5361,0	1/1:38:0,38:0:0:38:1364:-111.238,-11.4391,0	1/1:71:0,71:0:0:71:2552:-200.061,-21.3731,0	0/1:71:52,19:52:1868:19:680:-33.326,0,-143.319	0/1:116:80,36:80:2868:36:1296:-67.6536,0,-217.191	0/1:67:45,22:45:1597:22:792:-42.8128,0,-121.18	1/1:11:0,11:0:0:11:392:-31.7477,-3.31133,0	1/1:53:0,53:0:0:53:1881:-149.193,-15.9546,0	0/1:54:33,21:33:1161:21:756:-43.4004,0,-86.0418	0/0:13:12,1:12:432:1:36:0,-0.667231,-34.3637	0/1:95:77,18:77:2760:18:637:-23.2661,0,-211.784	0/1:35:27,8:27:957:8:288:-12.6122,0,-73.2026	0/1:12:9,3:9:324:3:108:-5.31299,0,-25.5537	1/1:5:0,5:0:0:5:180:-14.3259,-1.50515,0	1/1:31:0,31:0:0:31:1116:-90.0188,-9.33193,0	1/1:79:0,79:0:0:79:2836:-224.915,-23.7814,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.5238	0/1:188:142,46:142:5068:46:1637:-72.1226,0,-398.091	1/1:112:0,112:0:0:112:3982:-318.692,-33.7154,0	0/1:28:22,6:22:777:6:216:-9.42503,0,-60.5161	1/1:39:1,38:1:36:38:1368:-105.123,-8.1419,0	0/1:143:100,43:100:3558:43:1544:-79.4151,0,-266.193	0/0:161:146,15:146:5222:15:536:0,-5.29544,-415.341	0/1:47:31,16:31:1116:16:572:-31.8426,0,-85.4254	1/1:11:0,11:0:0:11:392:-32.3074,-3.31133,0	0/1:35:16,19:16:576:19:684:-44.2911,0,-41.2725	1/1:15:0,15:0:0:15:536:-43.8414,-4.51545,0	0/1:94:83,11:83:2980:11:396:-3.11121,0,-223.128	0/1:75:61,14:61:2164:14:504:-17.2817,0,-169.265	1/1:47:0,47:0:0:47:1688:-133.431,-14.1484,0	0/1:106:79,27:79:2832:27:964:-44.8151,0,-216.727	0/1:104:87,17:87:3112:17:612:-18.7795,0,-231.559	1/1:65:3,62:3:108:62:2232:-170.216,-10.0817,0	1/1:4:0,4:0:0:4:140:-11.0882,-1.20412,0	1/1:41:1,40:1:36:40:1440:-113.621,-8.88774,0	1/1:44:0,44:0:0:44:1584:-128.658,-13.2453,0	1/1:58:0,58:0:0:58:2084:-165.271,-17.4597,0	0/1:48:31,17:31:1108:17:612:-33.5587,0,-84.1747	0/1:70:34,36:34:1220:36:1292:-81.6304,0,-88.1713	1/1:49:0,49:0:0:49:1764:-141.051,-14.7505,0	0/1:111:51,60:51:1817:60:2156:-138.528,0,-128.757	1/1:30:0,30:0:0:30:1080:-87.7562,-9.0309,0	1/1:71:0,71:0:0:71:2552:-205.004,-21.3731,0	1/1:90:0,90:0:0:90:3236:-259.835,-27.0927,0	0/1:53:20,33:20:716:33:1184:-77.8496,0,-48.1767	0/1:86:47,39:47:1688:39:1404:-86.8833,0,-124.019	0/1:72:46,26:46:1652:26:921:-51.729,0,-125.703	1/1:63:0,63:0:0:63:2253:-177.912,-18.9649,0	1/1:87:0,87:0:0:87:3118:-247.708,-26.1896,0
chr07	1296362	.	A	C,G	122092	PASS	AB=0.332578,0.668519;ABP=970.059,979.326;AC=129,56;AF=0.693548,0.301075;AN=186;AO=3017,2820;CIGAR=1X,1X;DP=5844;DPB=5844;DPRA=7.0471,1.78383;EPP=6554.34,864.949;EPPR=6.91895;GTI=10;LEN=1,1;MEANALT=1.6413,2.01724;MQM=34.059,46.3227;MQMR=48.8;NS=93;NUMALT=2;ODDS=10266.8;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=107444,100591;QR=180;RO=5;RPL=3017,880;RPP=6554.34,868.211;RPPR=6.91895;RPR=0,1940;RUN=1,1;SAF=3017,2819;SAP=6554.34,6117.88;SAR=0,1;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:37:0,5,32:0:0:5,32:180,1147:-99.5812,-86.4798,-84.9746,-13.4272,0,-3.79422	1/2:50:0,11,39:0:0:11,39:396,1389:-136.908,-108.911,-105.6,-28.319,0,-16.5788	1/2:120:0,29,91:0:0:29,91:1036,3268:-326.687,-251.213,-242.483,-75.8011,0,-48.4074	1/2:172:0,45,127:0:0:45,127:1596,4481:-466.371,-355.302,-341.756,-111.386,0,-73.1551	1/1:15:0,15,0:0:0:15,0:540,0:-44.3914,-4.51545,0,-44.3914,-4.51545,-44.3914	1/1:14:0,14,0:0:0:14,0:500,0:-40.1749,-4.21442,0,-40.1749,-4.21442,-40.1749	1/2:35:0,11,24:0:0:11,24:396,850:-96.4537,-68.2166,-64.9053,-28.5649,0,-21.3402	1/1:43:0,42,1:0:0:42,1:1492,36:-120.232,-12.6433,0,-117.484,-9.55669,-117.183	1/1:19:0,19,0:0:0:19,0:663,0:-54.1949,-5.71957,0,-54.1949,-5.71957,-54.1949	1/2:59:0,17,42:0:0:17,42:608,1504:-162.851,-119.281,-114.163,-43.8968,0,-31.2536	1/1:48:0,48,0:0:0:48,0:1700,0:-136.136,-14.4494,0,-136.136,-14.4494,-136.136	1/2:110:0,59,51:0:0:59,51:2107,1805:-293.116,-141.637,-123.876,-151.809,0,-136.457	1/2:64:0,33,31:0:0:33,31:1175,1116:-174.356,-89.5165,-79.5825,-85.1763,0,-75.8444	1/2:56:0,35,21:0:0:35,21:1225,741:-147.71,-58.9283,-48.3923,-89.1148,0,-82.7932	1/1:82:0,82,0:0:0:82,0:2915,0:-230.755,-24.6845,0,-230.755,-24.6845,-230.755	1/2:61:0,24,37:0:0:24,37:847,1320:-165.992,-103.976,-96.7515,-62.3457,0,-51.2076	1/2:48:0,27,21:0:0:27,21:959,756:-128.411,-60.3301,-52.2023,-68.4153,0,-62.0937	1/2:25:0,12,13:0:0:12,13:424,468:-69.2202,-38.1638,-34.5514,-31.3946,0,-27.4812	1/1:18:0,18,0:0:0:18,0:644,0:-52.7588,-5.41854,0,-52.7588,-5.41854,-52.7588	1/1:35:0,35,0:0:0:35,0:1243,0:-98.2291,-10.5361,0,-98.2291,-10.5361,-98.2291	1/1:62:0,60,2:0:0:60,2:2131,72:-171.096,-18.0618,0,-165.35,-11.9637,-164.747	1/2:126:0,27,99:0:0:27,99:972,3520:-348.857,-280.767,-272.639,-68.4112,0,-38.6093	1/2:77:0,36,41:0:0:36,41:1283,1462:-206.191,-115.023,-104.186,-91.4966,0,-79.1543	1/2:40:0,12,28:0:0:12,28:420,997:-106.672,-75.831,-72.2186,-31.1645,0,-22.7356	1/2:64:0,10,54:0:0:10,54:356,1913:-174.328,-148.325,-145.315,-26.3273,0,-10.0716	1/1:92:1,91,0:1:36:91,0:3251,0:-255.165,-24.5071,0,-255.466,-27.3937,-258.033	1/1:37:0,37,0:0:0:37,0:1319,0:-105.924,-11.1381,0,-105.924,-11.1381,-105.924	1/1:34:0,34,0:0:0:34,0:1199,0:-98.1774,-10.235,0,-98.1774,-10.235,-98.1774	1/2:213:1,53,159:1:36:53,159:1885,5688:-584.177,-450.942,-437.924,-130.562,0,-85.636	1/2:139:1,57,81:1:36:57,81:2013,2900:-369.182,-225.017,-210.796,-141.497,0,-120.052	1/1:60:0,60,0:0:0:60,0:2117,0:-168.315,-18.0618,0,-168.315,-18.0618,-168.315	1/1:4:0,4,0:0:0:4,0:144,0:-12.0108,-1.20412,0,-12.0108,-1.20412,-12.0108	1/1:4:0,4,0:0:0:4,0:144,0:-12.0108,-1.20412,0,-12.0108,-1.20412,-12.0108	.:.:.:.:.:.:.:.	1/1:2:0,2,0:0:0:2,0:72,0:-6.1677,-0.60206,0,-6.1677,-0.60206,-6.1677	1/2:35:0,5,30:0:0:5,30:174,1080:-95.77,-83.7549,-82.2497,-12.3216,0,-3.29072	1/2:181:0,93,88:0:0:93,88:3304,3149:-489.306,-254.478,-226.483,-235.162,0,-208.672	1/2:103:0,33,70:0:0:33,70:1180,2456:-274.892,-188.818,-178.884,-86.3997,0,-65.3276	1/2:45:0,20,25:0:0:20,25:720,888:-121.729,-71.3465,-65.3259,-50.7115,0,-43.1857	1/2:5:0,1,4:0:0:1,4:36,144:-14.1938,-11.5775,-11.2765,-2.94513,0,-1.74101	1/2:115:0,24,91:0:0:24,91:864,3204:-311.552,-250.236,-243.011,-61.6378,0,-34.244	1/2:36:0,23,13:0:0:23,13:794,464:-95.0264,-37.6621,-30.7384,-57.7017,0,-53.7883	1/2:136:0,26,110:0:0:26,110:923,3929:-372.763,-306.014,-298.187,-67.0731,0,-33.9598	1/2:57:0,27,30:0:0:27,30:964,1068:-153.987,-85.8185,-77.6906,-68.5001,0,-59.4692	1/2:45:0,23,22:0:0:23,22:824,792:-122.105,-63.2415,-56.3179,-59.1981,0,-52.5754	1/1:34:0,34,0:0:0:34,0:1224,0:-96.984,-10.235,0,-96.984,-10.235,-96.984	1/1:38:0,38,0:0:0:38,0:1364,0:-111.238,-11.4391,0,-111.238,-11.4391,-111.238	1/1:70:0,70,0:0:0:70,0:2507,0:-196.552,-21.0721,0,-196.552,-21.0721,-196.552	1/2:70:0,18,52:0:0:18,52:648,1868:-195.354,-149.089,-143.67,-46.5927,0,-30.9392	1/2:118:0,36,82:0:0:36,82:1274,2926:-322.711,-232.332,-221.495,-90.702,0,-66.0175	1/2:66:0,21,45:0:0:21,45:756,1592:-180.789,-127.324,-121.002,-53.7912,0,-40.2448	1/1:11:0,11,0:0:0:11,0:396,0:-31.9295,-3.31133,0,-31.9295,-3.31133,-31.9295	1/1:50:0,50,0:0:0:50,0:1770,0:-140.429,-15.0515,0,-140.429,-15.0515,-140.429	1/2:52:0,21,31:0:0:21,31:733,1079:-138.341,-85.7855,-79.4638,-52.8783,0,-43.5464	2/2:13:0,1,12:0:0:1,12:36,432:-37.2836,-34.6647,-34.3637,-3.61236,-0.667231,0	1/2:97:0,19,78:0:0:19,78:680,2791:-268.224,-219.51,-213.79,-49.0373,0,-25.5569	1/2:36:0,8,28:0:0:8,28:284,1000:-98.6048,-78.3682,-75.9599,-20.5575,0,-12.1287	1/2:12:0,3,9:0:0:3,9:108,324:-34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chr07	1296381	.	CA	CG,TG	88030.9	PASS	AB=0.401288,0.597486;ABP=279.095,272.278;AC=132,54;AF=0.709677,0.290323;AN=186;AO=2954,1960;CIGAR=1M1X,2X;DP=4919;DPB=4922.5;DPRA=10.6826,1.51396;EPP=6417.54,4250.41;EPPR=0;GTI=10;LEN=1,2;MEANALT=1.66304,2.05263;MQM=34.1195,40.4204;MQMR=0;NS=93;NUMALT=2;ODDS=7142.28;PAIRED=0,0;PAIREDR=0;PAO=0,7;PQA=0,248;PQR=0;PRO=0;QA=104188,68668;QR=0;RO=0;RPL=2954,1960;RPP=6417.54,4259.1;RPPR=0;RPR=0,0;RUN=1,1;SAF=2954,1959;SAP=6417.54,4250.41;SAR=0,1;SRF=0;SRP=0;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:33:0,5,28:0:0:5,28:180,973:-85.9512,-72.8481,-71.3429,-13.4272,0,-4.99834	1/2:35:0,10,25:0:0:10,25:352,896:-93.753,-68.6528,-65.6425,-25.4196,0,-17.8939	1/2:102:0,25,77:0:0:25,77:880,2712:-271.04,-206.531,-199.005,-64.8317,0,-41.6524	1/2:151:0,47,104:0:0:47,104:1657,3601:-400.511,-283.673,-269.524,-117.156,0,-85.8491	1/1:14:0,14,0:0:0:14,0:481,0:-40.0644,-4.21442,0,-40.0644,-4.21442,-40.0644	1/1:14:0,14,0:0:0:14,0:488,0:-39.5414,-4.21442,0,-39.5414,-4.21442,-39.5414	1/2:28:0,12,16:0:0:12,16:411,530:-71.3717,-41.6122,-37.9999,-30.0733,0,-25.2568	1/1:41:0,40,1:0:0:40,1:1416,34:-114.783,-12.0412,0,-112.155,-9.08772,-111.854	1/1:20:0,20,0:0:0:20,0:716,0:-58.2433,-6.0206,0,-58.2433,-6.0206,-58.2433	1/2:48:0,16,32:0:0:16,32:548,1113:-127.212,-87.7188,-82.9023,-39.8108,0,-30.1779	1/1:43:0,43,0:0:0:43,0:1506,0:-121.136,-12.9443,0,-121.136,-12.9443,-121.136	1/2:84:0,57,27:0:0:57,27:2012,962:-218.281,-72.7935,-55.6348,-145.457,0,-137.329	1/2:43:0,33,10:0:0:33,10:1164,360:-112.206,-27.8169,-17.8829,-84.7225,0,-81.7122	1/2:45:0,34,11:0:0:34,11:1193,361:-114.589,-28.2091,-17.9741,-86.6955,0,-83.3842	1/1:80:0,80,0:0:0:80,0:2817,0:-223.447,-24.0824,0,-223.447,-24.0824,-223.447	1/2:45:0,23,22:0:0:23,22:816,776:-119.282,-59.6317,-52.708,-59.9782,0,-53.3555	1/2:36:0,26,10:0:0:26,10:928,335:-91.8167,-26.0003,-18.1736,-66.134,0,-63.1237	1/2:13:0,11,2:0:0:11,2:396,61:-33.8232,-4.97105,-1.65972,-29.1503,0,-28.5482	1/1:18:0,18,0:0:0:18,0:636,0:-52.3079,-5.41854,0,-52.3079,-5.41854,-52.3079	1/1:35:0,35,0:0:0:35,0:1206,0:-96.209,-10.5361,0,-96.209,-10.5361,-96.209	1/1:58:0,57,1:0:0:57,1:2019,36:-162.137,-17.1587,0,-159.328,-14.0052,-159.027	1/2:109:0,29,78:0:0:29,78:1031,2722:-287.878,-215.191,-206.461,-72.7061,0,-49.2257	1/2:78:0,38,40:0:0:38,40:1332,1392:-203.437,-108.734,-97.2952,-95.0244,0,-82.9832	1/2:41:0,12,29:0:0:12,29:420,1017:-108.199,-77.3568,-73.7444,-31.1645,0,-22.4346	1/2:57:0,10,47:0:0:10,47:360,1662:-154.432,-128.229,-125.219,-26.5297,0,-12.3813	1/1:90:0,90,0:0:0:90,0:3187,0:-254.379,-27.0927,0,-254.379,-27.0927,-254.379	1/1:39:0,39,0:0:0:39,0:1383,0:-111.539,-11.7402,0,-111.539,-11.7402,-111.539	1/1:33:0,33,0:0:0:33,0:1151,0:-94.7783,-9.93399,0,-94.7783,-9.93399,-94.7783	1/2:207:0,55,152:0:0:55,152:1905,5308:-558.195,-422.85,-406.294,-135.661,0,-89.9043	1/2:121:0,56,65:0:0:56,65:1979,2307:-322.538,-179.912,-163.054,-142.954,0,-123.387	1/1:56:0,56,0:0:0:56,0:1967,0:-156.956,-16.8577,0,-156.956,-16.8577,-156.956	1/1:3:0,3,0:0:0:3,0:108,0:-9.08924,-0.90309,0,-9.08924,-0.90309,-9.08924	1/1:4:0,4,0:0:0:4,0:144,0:-12.0108,-1.20412,0,-12.0108,-1.20412,-12.0108	.:.:.:.:.:.:.:.	1/1:2:0,2,0:0:0:2,0:68,0:-5.95632,-0.60206,0,-5.95632,-0.60206,-5.95632	1/2:29:0,5,24:0:0:5,24:176,820:-74.8354,-62.8074,-61.3022,-12.3326,0,-5.10785	1/2:137:0,91,45:0:0:91,45:3222,1556:-354.501,-124.23,-96.8361,-230.297,0,-216.751	1/2:96:0,34,62:0:0:34,62:1195,2115:-249.93,-162.384,-152.149,-87.8668,0,-69.2029	1/2:24:0,17,7:0:0:17,7:604,247:-61.6689,-19.2383,-14.1208,-42.7575,0,-40.6503	1/2:5:0,1,4:0:0:1,4:36,144:-14.1938,-11.5775,-11.2765,-2.94513,0,-1.74101	1/2:102:0,24,78:0:0:24,78:855,2734:-273.18,-212.122,-204.897,-61.3788,0,-37.8984	1/2:28:0,24,4:0:0:24,4:848,144:-72.7013,-11.5775,-4.35278,-61.4652,0,-60.261	1/2:123:0,27,96:0:0:27,96:952,3385:-330.843,-261.763,-253.636,-69.4018,0,-40.5029	1/2:38:0,28,10:0:0:28,10:979,360:-97.9088,-28.1759,-19.747,-70.0671,0,-67.0568	1/2:31:0,23,8:0:0:23,8:797,268:-78.5453,-21.2126,-14.2889,-57.6529,0,-55.2447	1/1:35:0,35,0:0:0:35,0:1218,0:-98.4903,-10.5361,0,-98.4903,-10.5361,-98.4903	1/1:36:0,36,0:0:0:36,0:1284,0:-104.898,-10.8371,0,-104.898,-10.8371,-104.898	1/1:70:0,70,0:0:0:70,0:2469,0:-194.71,-21.0721,0,-194.71,-21.0721,-194.71	1/2:61:0,18,43:0:0:18,43:648,1522:-167.189,-120.923,-115.505,-46.5927,0,-33.6485	1/2:96:0,35,61:0:0:35,61:1248,2154:-257.598,-169.219,-158.683,-88.3834,0,-70.0205	1/2:67:0,22,45:0:0:22,45:780,1573:-181.208,-125.715,-119.093,-55.8165,0,-42.2702	1/1:10:0,10,0:0:0:10,0:356,0:-28.8787,-3.0103,0,-28.8787,-3.0103,-28.8787	1/1:47:0,47,0:0:0:47,0:1676,0:-133.691,-14.1484,0,-133.691,-14.1484,-133.691	1/2:49:0,21,28:0:0:21,28:735,975:-129.999,-77.1351,-70.8135,-53.1879,0,-44.7591	1/2:9:0,1,8:0:0:1,8:36,286:-24.7382,-22.119,-21.8179,-2.94513,0,-0.536889	1/2:75:0,17,58:0:0:17,58:582,2052:-202.936,-160.092,-154.974,-43.1636,0,-25.7039	1/2:34:0,8,26:0:0:8,26:284,890:-90.0931,-69.8539,-67.4457,-20.5575,0,-12.7307	1/2:9:0,3,6:0:0:3,6:104,216:-25.1522,-17.6425,-16.7394,-7.83563,0,-6.02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chr07	1310012	.	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chr07	1311388	.	A	C	52699.8	PASS	AB=0.45172;ABP=112.461;AC=132;AF=0.709677;AN=186;AO=6120;CIGAR=1X;DP=9112;DPB=9112;DPRA=13.3289;EPP=13292.4;EPPR=6497.88;GTI=4;LEN=1;MEANALT=1.01099;MQM=22.9392;MQMR=40.7987;NS=93;NUMALT=1;ODDS=1.49638;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218077;QR=106711;RO=2991;RPL=2;RPP=13275.1;RPPR=6376.85;RPR=6118;RUN=1;SAF=2;SAP=13275.1;SAR=6118;SRF=14;SRP=6376.85;SRR=2977;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:33,26:33:1184:26:924:-35.7109,0,-80.4192	0/1:81:48,33:48:1720:33:1176:-43.4452,0,-120.791	0/1:161:97,64:97:3460:64:2288:-83.1646,0,-243.461	0/1:279:156,123:156:5558:123:4386:-169.196,0,-401.657	1/1:62:1,61:1:36:61:2180:-121.774,-15.2094,0	1/1:51:1,50:1:36:50:1788:-99.9747,-11.9649,0	0/1:110:66,44:66:2343:44:1571:-57.2188,0,-171.241	1/1:154:0,154:0:0:154:5476:-317.141,-46.3586,0	1/1:103:0,103:0:0:103:3688:-211.932,-31.0061,0	0/1:94:54,40:54:1923:40:1425:-53.6183,0,-140.14	1/1:34:0,34:0:0:34:1191:-69.9389,-10.235,0	0/1:117:59,58:59:2100:58:2064:-83.9612,0,-140.752	0/1:77:34,43:34:1224:43:1536:-65.2446,0,-78.8404	0/1:55:27,28:27:960:28:1000:-41.0442,0,-66.7994	1/1:91:0,91:0:0:91:3247:-187.124,-27.3937,0	0/1:85:52,33:52:1844:33:1180:-42.0946,0,-132.557	0/1:42:23,19:23:824:19:684:-26.8879,0,-56.9939	0/1:40:19,21:19:672:21:744:-31.1755,0,-45.5025	1/1:22:0,22:0:0:22:788:-46.0863,-6.62266,0	1/1:185:1,184:1:36:184:6540:-373.574,-52.1879,0	1/1:190:0,190:0:0:190:6788:-389.647,-57.1957,0	0/1:101:73,28:73:2620:28:985:-25.7876,0,-198.85	0/1:136:83,53:83:2951:53:1888:-67.8539,0,-216.412	0/1:52:25,27:25:896:27:963:-39.8389,0,-60.8315	0/1:71:44,27:44:1572:27:950:-33.9802,0,-115.01	1/1:222:1,221:1:36:221:7848:-433.464,-63.2925,0	1/1:213:1,212:1:36:212:7539:-432.489,-61.3832,0	1/1:39:0,39:0:0:39:1396:-80.7454,-11.7402,0	0/1:362:207,155:207:7366:155:5527:-197.667,0,-537.534	0/1:188:82,106:82:2932:106:3796:-161.774,0,-195.773	1/1:80:0,80:0:0:80:2848:-164.846,-24.0824,0	1/1:10:0,10:0:0:10:356:-20.8672,-3.0103,0	1/1:9:0,9:0:0:9:315:-18.5739,-2.70927,0	1/1:2:0,2:0:0:2:72:-4.32984,-0.60206,0	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.6318	0/1:232:109,123:109:3896:123:4408:-172.715,0,-273.052	0/1:86:54,32:54:1940:32:1143:-39.8588,0,-141.169	0/1:28:14,14:14:500:14:500:-20.4854,0,-34.3353	1/1:2:0,2:0:0:2:68:-4.30123,-0.60206,0	0/1:169:90,79:90:3191:79:2831:-111.242,0,-223.342	0/1:30:19,11:19:676:11:392:-13.7304,0,-49.875	0/1:168:94,74:94:3342:74:2618:-101.27,0,-236.627	0/1:55:28,27:28:995:27:960:-38.966,0,-71.0964	0/1:71:37,34:37:1328:34:1208:-48.9846,0,-94.2529	1/1:95:0,95:0:0:95:3396:-187.264,-28.5979,0	1/1:88:1,87:1:36:87:3104:-175.423,-23.103,0	1/1:180:4,176:4:144:176:6283:-350.223,-41.2254,0	0/1:100:59,41:59:2112:41:1457:-53.8359,0,-153.623	0/1:169:83,86:83:2980:86:3062:-125.406,0,-208.731	0/1:105:45,60:45:1604:60:2115:-86.9463,0,-109.755	1/1:4:0,4:0:0:4:144:-8.4318,-1.20412,0	1/1:113:0,113:0:0:113:4056:-232.411,-34.0164,0	0/1:65:31,34:31:1108:34:1216:-47.4983,0,-77.9306	0/1:17:13,4:13:468:4:144:-3.31429,0,-34.8562	0/1:192:96,96:96:3404:96:3426:-139.353,0,-235.72	0/1:59:30,29:30:1063:29:1026:-41.7218,0,-75.2615	0/0:9:9,0:9:324:0:0:0,-2.70927,-26.1776	1/1:11:0,11:0:0:11:396:-21.8315,-3.31133,0	1/1:100:0,100:0:0:100:3538:-204.804,-30.103,0	1/1:82:0,82:0:0:82:2914:-170.148,-24.6845,0	0/1:6:2,4:2:72:4:144:-6.62562,0,-4.84895	0/1:254:144,110:144:5143:110:3917:-139.871,0,-377.155	1/1:158:0,158:0:0:158:5628:-323.674,-47.5627,0	0/1:70:31,39:31:1100:39:1379:-58.9235,0,-74.0082	1/1:106:1,105:1:36:105:3755:-213.214,-29.0064,0	0/1:183:102,80:102:3637:80:2842:-110.545,0,-261.673	0/1:185:147,38:147:5259:38:1352:-22.3658,0,-401.871	0/1:49:26,23:26:909:23:820:-32.5955,0,-63.4082	1/1:86:0,86:0:0:86:3088:-178.77,-25.8886,0	0/1:34:12,22:12:424:22:783:-33.2042,0,-26.4209	1/1:14:0,14:0:0:14:492:-28.8596,-4.21442,0	0/1:89:53,36:53:1900:36:1296:-47.2715,0,-132.37	0/1:109:41,68:41:1468:68:2424:-107.39,0,-90.6639	1/1:122:0,122:0:0:122:4328:-249.981,-36.7257,0	0/1:173:88,85:88:3123:85:3032:-122.709,0,-221.051	0/1:135:84,51:84:3020:51:1812:-64.1112,0,-213.924	1/1:143:0,143:0:0:143:5104:-295.175,-43.0473,0	1/1:9:0,9:0:0:9:324:-18.6867,-2.70927,0	1/1:126:1,125:1:36:125:4412:-253.006,-35.1936,0	1/1:97:1,96:1:36:96:3424:-194.849,-26.6412,0	1/1:201:0,201:0:0:201:7138:-413.458,-60.507,0	0/1:60:31,29:31:1112:29:1036:-41.5901,0,-79.676	0/1:68:36,32:36:1275:32:1139:-45.8029,0,-89.128	1/1:36:0,36:0:0:36:1283:-73.7506,-10.8371,0	0/1:144:73,71:73:2610:71:2540:-102.296,0,-183.796	1/1:35:0,35:0:0:35:1240:-72.1761,-10.5361,0	1/1:88:0,88:0:0:88:3148:-182.116,-26.4906,0	1/1:71:0,71:0:0:71:2536:-145.712,-21.3731,0	0/1:31:12,19:12:432:19:684:-29.8646,0,-28.322	0/1:93:52,41:52:1856:41:1468:-56.2679,0,-132.337	0/1:67:45,22:45:1607:22:775:-25.014,0,-120.398	1/1:128:0,128:0:0:128:4579:-262.506,-38.5318,0	1/1:129:0,129:0:0:129:4603:-264.555,-38.8329,0
chr07	1315696	.	G	A	61273.1	PASS	AB=0.507853;ABP=6.7617;AC=54;AF=0.287234;AN=188;AO=3577;CIGAR=1X;DP=13390;DPB=13390;DPRA=1.06861;EPP=7666.49;EPPR=20138.1;GTI=1;LEN=1;MEANALT=1.05;MQM=59.9944;MQMR=59.975;NS=94;NUMALT=1;ODDS=18.6328;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127761;QR=350321;RO=9809;RPL=3565;RPP=7666.49;RPPR=20146.5;RPR=12;RUN=1;SAF=0;SAP=7770.37;SAR=3577;SRF=1;SRP=21294.3;SRR=9808;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:111:53,58:53:1884:58:2060:-152.255,0,-136.424	0/1:118:55,63:55:1946:63:2256:-167.781,0,-139.893	0/1:231:130,101:130:4635:101:3622:-256.646,0,-347.776	0/1:334:181,152:181:6436:152:5422:-387.505,0,-478.727	0/0:166:164,1:164:5867:1:36:0,-46.4315,-524.543	0/0:112:112,0:112:3997:0:0:0,-33.7154,-359.919	0/1:142:54,88:54:1914:88:3117:-238.011,0,-129.79	0/0:326:326,0:326:11610:0:0:0,-98.1358,-1044.77	0/0:214:214,0:214:7642:0:0:0,-64.4204,-687.818	0/1:112:36,76:36:1284:76:2703:-209.797,0,-82.1481	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:119:56,63:56:2012:63:2255:-167.39,0,-145.531	0/1:71:39,32:39:1404:32:1148:-82.2567,0,-105.286	0/1:39:29,10:29:1029:10:351:-20.1865,0,-81.181	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/1:87:51,36:51:1815:36:1292:-90.3942,0,-137.441	0/1:27:17,10:17:595:10:360:-24.6165,0,-45.7489	0/1:32:11,21:11:396:21:752:-58.3733,0,-26.3498	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:352:352,0:352:12579:0:0:0,-105.963,-1131.62	0/0:319:319,0:319:11392:0:0:0,-96.0286,-1025.16	0/1:216:80,136:80:2850:136:4888:-375.047,0,-191.715	0/1:171:79,92:79:2819:92:3280:-243.945,0,-202.473	0/1:86:27,59:27:968:59:2112:-164.46,0,-61.5488	0/1:171:77,93:77:2746:93:3315:-247.033,0,-195.847	0/0:437:433,4:433:15481:4:144:0,-118.236,-1379.68	0/0:467:465,2:465:16676:2:72:0,-133.744,-1491.85	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:463:239,224:239:8537:224:7980:-578.847,0,-628.952	0/1:107:51,56:51:1828:56:2008:-148.783,0,-132.591	0/0:182:182,0:182:6482:0:0:0,-54.7875,-583.418	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:53:53,0:53:1900:0:0:0,-15.9546,-170.421	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:62:31,31:31:1095:31:1088:-79.5626,0,-80.1952	0/1:213:116,97:116:4147:97:3488:-250.01,0,-309.271	0/1:227:129,98:129:4612:98:3501:-246.965,0,-346.911	0/1:52:24,28:24:855:28:993:-74.0289,0,-61.6166	1/1:7:0,7:0:0:7:234:-21.3866,-2.10721,0	0/1:147:75,72:75:2700:72:2561:-186.488,0,-198.992	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.2574	0/1:274:116,158:116:4142:158:5656:-426.678,0,-290.481	0/1:50:27,23:27:968:23:828:-59.7926,0,-72.3859	0/1:53:34,19:34:1224:19:680:-45.5746,0,-94.5125	0/0:199:198,1:198:7036:1:36:0,-56.3067,-629.708	0/0:265:265,0:265:9493:0:0:0,-79.7729,-853.769	0/0:345:344,0:344:12291:0:0:0,-103.554,-1105.67	0/1:155:86,69:86:3088:69:2453:-174.365,0,-231.488	0/1:206:113,93:113:4039:93:3328:-237.726,0,-301.686	0/1:144:57,87:57:2035:87:3120:-237.678,0,-140.073	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/0:178:178,0:178:6358:0:0:0,-53.5833,-572.311	0/1:78:34,44:34:1224:44:1551:-116.398,0,-86.9867	0/1:24:4,20:4:144:20:720:-57.9041,0,-6.0889	0/1:261:139,122:139:4961:122:4371:-314.994,0,-368.07	0/1:99:44,55:44:1567:55:1964:-147.233,0,-111.519	0/1:25:12,13:12:432:13:451:-33.3941,0,-31.6954	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.932	0/0:86:85,1:85:3035:1:36:0,-22.2903,-269.782	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:329:157,172:157:5624:172:6172:-456.537,0,-407.242	0/0:235:233,2:233:8316:2:72:0,-63.9053,-741.612	0/1:86:46,40:46:1635:40:1436:-103.649,0,-121.549	0/0:207:207,0:207:7406:0:0:0,-62.3132,-666.585	0/1:299:169,130:169:6038:130:4663:-329.822,0,-453.516	0/1:304:118,186:118:4206:186:6638:-505.984,0,-287.208	0/1:25:13,12:13:468:12:428:-31.3331,0,-34.9339	0/0:88:88,0:88:3147:0:0:0,-26.4906,-283.455	0/1:33:10,23:10:351:23:827:-64.82,0,-21.9927	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:163:82,81:82:2910:81:2874:-209.829,0,-213.066	0/1:161:78,83:78:2783:83:2954:-217.626,0,-202.243	0/0:186:186,0:186:6626:0:0:0,-55.9916,-596.419	0/1:250:139,111:139:4991:111:3969:-282.143,0,-374.078	0/1:198:105,93:105:3741:93:3298:-237.436,0,-277.286	0/0:149:147,2:147:5272:2:72:0,-38.0167,-467.778	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:178:178,0:178:6358:0:0:0,-53.5833,-572.311	0/0:177:177,0:177:6283:0:0:0,-53.2823,-565.559	0/0:502:502,0:502:17863:0:0:0,-151.117,-1607.25	0/1:61:20,41:20:720:41:1468:-114.053,0,-46.7659	0/1:64:34,30:34:1211:30:1071:-77.4357,0,-90.0296	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:118:67,51:67:2400:51:1832:-129.639,0,-180.735	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/1:23:11,12:11:387:12:428:-31.9351,0,-28.2422	0/1:53:29,24:29:1040:24:864:-62.128,0,-77.9598	0/1:78:31,47:31:1108:47:1671:-127.196,0,-76.5507	0/0:147:147,0:147:5247:0:0:0,-44.2514,-472.368	0/0:119:119,0:119:4263:0:0:0,-35.8226,-383.847
chr07	1361573	.	A	G	29909.8	PASS	AB=0.484487;ABP=10.8929;AC=53;AF=0.281915;AN=188;AO=1839;CIGAR=1X;DP=6729;DPB=6729;DPRA=1.30699;EPP=3987.67;EPPR=10612.8;GTI=2;LEN=1;MEANALT=1.06452;MQM=59.9739;MQMR=59.9849;NS=94;NUMALT=1;ODDS=0.898688;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65284;QR=172688;RO=4886;RPL=1839;RPP=3996.35;RPPR=10612.8;RPR=0;RUN=1;SAF=1838;SAP=3987.67;SAR=1;SRF=4886;SRP=10612.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:19,23:19:659:23:814:-60.9382,0,-46.989	0/1:71:33,38:33:1180:38:1368:-102.048,0,-85.1349	0/1:91:56,35:56:1979:35:1231:-83.6943,0,-150.99	0/1:159:89,70:89:3155:70:2475:-175.14,0,-236.313	0/0:32:32,0:32:1128:0:0:0,-9.63296,-101.828	0/0:13:13,0:13:447:0:0:0,-3.91339,-40.5577	0/1:48:23,24:23:800:24:860:-63.2137,0,-57.8108	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:131:130,1:130:4612:1:36:0,-35.8367,-411.642	0/1:55:18,37:18:635:37:1320:-102.545,0,-40.9203	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:93:52,41:52:1840:41:1453:-103.069,0,-137.885	0/1:93:41,52:41:1450:52:1836:-137.524,0,-102.799	0/1:78:47,31:47:1676:31:1116:-77.2714,0,-127.647	0/0:78:78,0:78:2728:0:0:0,-23.4803,-245.728	0/1:58:41,17:41:1459:17:604:-37.2309,0,-114.146	0/1:36:16,20:16:572:20:720:-54.2917,0,-40.9763	0/1:48:25,23:25:884:23:828:-60.3947,0,-65.4289	0/0:30:30,0:30:1054:0:0:0,-9.0309,-95.1692	0/0:67:66,1:66:2360:1:36:0,-16.5707,-209.06	0/0:97:97,0:97:3432:0:0:0,-29.1999,-309.097	0/1:57:17,40:17:604:40:1407:-109.765,0,-37.5319	0/1:121:66,55:66:2360:55:1932:-137.727,0,-176.234	0/1:65:37,28:37:1304:28:1000:-70.7484,0,-98.0944	0/1:28:10,18:10:339:18:631:-48.6868,0,-22.4087	0/0:144:143,1:143:5068:1:36:0,-39.75,-452.673	0/0:153:153,0:153:5411:0:0:0,-46.0576,-487.128	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/1:204:101,103:101:3556:103:3655:-267.743,0,-258.844	0/1:90:45,45:45:1588:45:1594:-116.656,0,-116.118	0/0:99:99,0:99:3485:0:0:0,-29.802,-313.864	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:11:5,6:5:180:6:195:-14.5565,0,-13.2407	0/1:212:108,104:108:3831:104:3670:-266.682,0,-280.853	0/1:79:45,34:45:1583:34:1216:-85.9652,0,-118.978	0/1:40:26,14:26:915:14:500:-33.295,0,-70.6244	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:74:41,33:41:1446:33:1151:-81.6163,0,-108.088	0/1:25:9,16:9:324:16:572:-44.2877,0,-21.9801	0/1:81:37,44:37:1316:44:1584:-118.468,0,-94.3584	0/1:75:40,35:40:1432:35:1241:-89.4153,0,-106.6	0/1:52:28,24:28:977:24:846:-60.8055,0,-72.587	0/0:97:97,0:97:3409:0:0:0,-29.1999,-307.027	0/0:84:84,0:84:2957:0:0:0,-25.2865,-266.365	0/0:133:132,1:132:4692:1:36:0,-36.4387,-418.846	0/1:63:23,40:23:808:40:1432:-110.213,0,-54.0752	0/1:90:44,46:44:1556:46:1620:-118.995,0,-113.239	0/1:58:34,24:34:1208:24:840:-58.4557,0,-91.5663	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:84:84,0:84:2989:0:0:0,-25.2865,-269.241	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:120:68,52:68:2415:52:1822:-128.134,0,-181.483	0/1:7:4,3:4:136:3:108:-7.96796,0,-10.4683	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/0:100:98,2:98:3457:2:72:0,-23.2663,-304.508	0/1:6:5,1:5:172:1:36:-1.79209,0,-14.0118	0/1:194:104,90:104:3680:90:3210:-230.722,0,-273.005	0/0:133:130,3:130:4569:3:108:0,-29.9618,-401.305	0/1:50:33,16:33:1142:16:561:-35.7074,0,-87.974	0/0:73:73,0:73:2563:0:0:0,-21.9752,-230.922	0/1:121:62,59:62:2184:59:2116:-154.284,0,-160.402	0/1:83:36,47:36:1280:47:1684:-126.862,0,-90.5177	0/1:32:19,13:19:671:13:456:-31.7397,0,-51.0828	0/0:45:45,0:45:1570:0:0:0,-13.5463,-141.589	0/1:40:23,17:23:812:17:570:-39.5734,0,-61.3597	0/0:14:14,0:14:488:0:0:0,-4.21442,-44.2504	0/1:97:40,56:40:1379:56:1999:-151.052,0,-95.2743	0/1:62:26,36:26:904:36:1292:-97.9199,0,-63.0108	0/0:202:202,0:202:7137:0:0:0,-60.8081,-642.399	0/1:135:77,58:77:2704:58:2079:-146.741,0,-202.968	0/1:39:19,20:19:657:20:712:-52.6665,0,-47.7103	0/0:94:93,1:93:3294:1:36:0,-24.6985,-293.082	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:104:104,0:104:3619:0:0:0,-31.3071,-325.922	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.823	0/0:146:145,1:145:5120:1:36:0,-40.3521,-457.353	0/1:71:41,30:41:1464:30:1060:-74.3381,0,-110.683	0/1:61:33,28:33:1180:28:999:-71.8617,0,-88.1452	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:137:84,53:84:2959:53:1870:-127.337,0,-225.305	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:82:82,0:82:2884:0:0:0,-24.6845,-259.797	0/0:71:71,0:71:2476:0:0:0,-21.3731,-223.094	0/1:30:10,20:10:360:20:707:-54.9237,0,-23.7134	0/1:86:37,49:37:1307:49:1748:-131.716,0,-92.0422	0/1:83:32,51:32:1148:51:1824:-139.456,0,-78.6443	0/0:101:101,0:101:3577:0:0:0,-30.404,-322.139	0/0:105:103,1:103:3672:1:36:0,-28.0687,-327.087
chr07	1382471	.	C	A	34200.2	PASS	AB=0.508075;ABP=5.28967;AC=54;AF=0.287234;AN=188;AO=2050;CIGAR=1X;DP=6781;DPB=6781;DPRA=1.18645;EPP=4454.53;EPPR=10267.6;GTI=1;LEN=1;MEANALT=1.07018;MQM=54.2283;MQMR=59.4906;NS=94;NUMALT=1;ODDS=0.211992;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73118;QR=166950;RO=4727;RPL=2050;RPP=4454.53;RPPR=10267.6;RPR=0;RUN=1;SAF=2050;SAP=4454.53;SAR=0;SRF=4727;SRP=10267.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:10,7:10:360:7:252:-17.8536,0,-27.6268	0/1:66:29,37:29:1008:37:1323:-99.1254,0,-71.1516	0/1:77:42,35:42:1468:35:1248:-89.1688,0,-109.216	0/1:196:123,72:123:4313:72:2576:-172.682,0,-329.263	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.752	0/1:118:61,57:61:2175:57:2012:-145.164,0,-160.403	0/1:132:79,53:79:2764:53:1885:-129.68,0,-208.904	0/0:77:77,0:77:2717:0:0:0,-23.1793,-244.703	0/1:97:62,35:62:2207:35:1240:-82.5333,0,-169.683	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:97:46,51:46:1622:51:1828:-134.999,0,-117.042	0/1:73:42,31:42:1496:31:1112:-77.7759,0,-112.906	0/1:60:29,31:29:1027:31:1088:-79.7825,0,-74.652	0/0:97:97,0:97:3435:0:0:0,-29.1999,-309.316	0/1:47:23,24:23:820:24:860:-63.2143,0,-59.9649	0/1:38:18,20:18:644:20:720:-53.3231,0,-46.8515	0/1:41:19,22:19:684:22:784:-58.3715,0,-49.5317	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.884	0/0:129:129,0:129:4537:0:0:0,-38.8329,-408.467	0/0:131:131,0:131:4567:0:0:0,-39.4349,-410.85	0/1:27:10,17:10:356:17:597:-45.8496,0,-24.2534	0/1:78:31,47:31:1088:47:1677:-127.139,0,-74.708	0/1:51:27,24:27:948:24:847:-60.7082,0,-70.2049	0/1:23:10,13:10:360:13:460:-34.5892,0,-25.8206	0/0:197:197,0:197:6936:0:0:0,-59.3029,-624.304	0/0:172:172,0:172:6104:0:0:0,-51.7772,-549.431	0/0:56:56,0:56:1970:0:0:0,-16.8577,-177.539	0/1:191:96,95:96:3376:95:3408:-248.889,0,-246.546	0/1:92:37,55:37:1288:55:1972:-148.624,0,-88.4879	0/0:104:104,0:104:3635:0:0:0,-31.3071,-326.86	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3089	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.857	0/1:7:3,4:3:108:4:140:-10.8089,0,-7.96796	0/1:204:95,109:95:3383:109:3899:-289.476,0,-243.265	0/1:83:29,54:29:1019:54:1918:-146.377,0,-66.0446	0/1:39:19,20:19:680:20:716:-52.5802,0,-49.789	1/1:1:0,1:0:0:1:32:-3.19727,-0.30103,0	0/1:103:43,60:43:1518:60:2139:-160.569,0,-105.759	0/1:21:12,9:12:428:9:311:-21.8001,0,-32.5307	0/1:41:25,16:25:883:16:576:-39.7147,0,-67.4076	0/1:69:31,38:31:1095:38:1368:-102.476,0,-77.9981	0/1:60:19,40:19:684:40:1428:-110.518,0,-43.7676	0/0:55:55,0:55:1946:0:0:0,-16.5566,-175.302	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.37	0/0:125:125,0:125:4407:0:0:0,-37.6287,-396.787	0/1:80:32,47:32:1129:47:1692:-127.776,0,-77.7709	0/1:97:43,54:43:1517:54:1927:-143.957,0,-107.609	0/1:61:35,26:35:1252:26:936:-65.6003,0,-94.5929	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0703	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.891	0/0:61:61,0:61:2132:0:0:0,-18.3628,-192.143	0/1:12:4,8:4:144:8:284:-22.2299,0,-9.70126	0/1:149:67,82:67:2386:82:2944:-219.656,0,-170.136	0/1:16:8,8:8:288:8:284:-21.0694,0,-21.2892	0/1:2:1,1:1:36:1:36:-2.93406,0,-2.99621	0/0:6:6,0:6:194:0:0:0,-1.80618,-17.7776	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.503	0/0:90:90,0:90:3175:0:0:0,-27.0927,-285.65	0/1:6:5,1:5:180:1:36:-1.7895,0,-14.7459	0/1:228:123,105:123:4325:105:3764:-269.479,0,-320.785	0/0:91:90,1:90:3180:1:36:0,-23.798,-282.79	0/1:70:31,39:31:1095:39:1396:-104.495,0,-77.7824	0/0:42:41,1:41:1445:1:36:0,-9.04758,-126.739	0/1:142:75,67:75:2642:67:2368:-170.321,0,-194.649	0/1:133:53,80:53:1861:80:2833:-214.616,0,-127.458	0/1:30:18,12:18:648:12:424:-29.3975,0,-49.5892	0/0:51:51,0:51:1808:0:0:0,-15.3525,-162.999	0/1:29:14,15:14:496:15:525:-38.8354,0,-36.244	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.2904	0/1:82:45,37:45:1595:37:1313:-93.4959,0,-118.939	0/1:132:62,70:62:2192:70:2500:-183.614,0,-157.783	0/0:109:108,1:108:3823:1:36:0,-29.2191,-340.64	0/1:118:57,61:57:2028:61:2188:-161.25,0,-147.266	0/1:18:12,6:12:415:6:212:-13.1795,0,-32.254	0/0:108:108,0:108:3836:0:0:0,-32.5112,-344.279	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0345	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/0:76:76,0:76:2698:0:0:0,-22.8783,-242.396	0/0:141:141,0:141:4986:0:0:0,-42.4452,-448.667	0/1:60:35,25:35:1242:25:868:-60.1494,0,-94.0142	0/1:80:38,42:38:1352:42:1504:-111.159,0,-97.8589	0/0:63:63,0:63:2227:0:0:0,-18.9649,-200.675	0/1:129:67,62:67:2360:62:2205:-159.502,0,-173.748	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:79:79,0:79:2791:0:0:0,-23.7814,-251.366	0/0:73:73,0:73:2598:0:0:0,-21.9752,-234.051	0/1:36:16,20:16:558:20:716:-53.7757,0,-39.7094	0/1:74:38,35:38:1340:35:1248:-88.968,0,-98.5503	0/1:93:27,66:27:959:66:2355:-184.009,0,-58.6273	0/0:155:155,0:155:5477:0:0:0,-46.6596,-493.035	0/0:115:114,1:114:3992:1:36:0,-31.0228,-355.728
chr07	1417786	.	A	T,G	163283	PASS	AB=0.516129,0.483871;ABP=13.5174,13.5174;AC=134,52;AF=0.72043,0.27957;AN=186;AO=5498,2258;CIGAR=1X,1X;DP=7759;DPB=7759;DPRA=0,1.42917;EPP=11941.8,4906.2;EPPR=9.52472;GTI=0;LEN=1,1;MEANALT=1.60215,2;MQM=59.9947,59.9894;MQMR=60;NS=93;NUMALT=2;ODDS=2.2694;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=196031,79698;QR=108;RO=3;RPL=5498,2258;RPP=11941.8,4906.2;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=5498,2258;SAP=11941.8,4906.2;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,17,15:0:0:17,15:612,527:-93.1854,-43.2447,-38.1272,-50.2959,0,-45.7805	1/2:338:0,168,170:0:0:168,170:6010,6035:-982.159,-492.083,-441.51,-490.433,0,-439.258	1/2:140:0,83,57:0:0:83,57:2952,2008:-404.406,-163.833,-138.848,-240.927,0,-223.768	1/2:214:0,94,120:0:0:94,120:3330,4256:-618.325,-347.06,-318.763,-271.619,0,-235.496	1/1:96:0,96,0:0:0:96,0:3432,0:-309.094,-28.8989,0,-309.094,-28.8989,-309.094	1/1:48:0,48,0:0:0:48,0:1715,0:-154.636,-14.4494,0,-154.636,-14.4494,-154.636	1/2:138:0,60,78:0:0:60,78:2148,2756:-399.971,-224.801,-206.739,-175.526,0,-152.045	1/2:144:0,87,57:0:0:87,57:3120,2013:-418.764,-164.282,-138.093,-254.837,0,-237.678	1/1:66:1,65,0:1:36:65,0:2301,0:-203.748,-16.2697,0,-204.049,-19.567,-206.986	1/2:99:0,63,36:0:0:63,36:2264,1263:-287.838,-103.135,-84.1698,-185.057,0,-174.22	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/2:36:0,17,19:0:0:17,19:595,675:-103.764,-55.3574,-50.2399,-48.7592,0,-43.0396	1/2:31:0,18,13:0:0:18,13:648,456:-90.3387,-37.4598,-32.0413,-53.2333,0,-49.32	1/2:36:0,20,16:0:0:20,16:716,551:-103.495,-45.098,-39.0774,-58.7471,0,-53.9306	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/2:32:0,14,18:0:0:14,18:504,618:-91.6525,-50.5214,-46.3069,-41.4837,0,-36.0651	1/2:27:0,18,9:0:0:18,9:640,320:-78.5885,-26.4331,-21.0145,-52.5108,0,-49.8015	1/2:28:0,16,12:0:0:16,12:564,419:-80.3537,-34.4303,-29.6138,-46.2738,0,-42.6615	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/1:232:0,231,1:0:0:231,1:8265,36:-743.498,-69.5379,0,-740.56,-66.2407,-740.259	1/1:164:0,164,0:0:0:164,0:5851,0:-526.702,-49.3689,0,-526.702,-49.3689,-526.702	1/2:139:0,41,98:0:0:41,98:1453,3487:-402.908,-284.541,-272.199,-118.722,0,-89.2208	1/2:52:0,25,27:0:0:25,27:883,955:-150.045,-78.1365,-70.6107,-72.2617,0,-64.1339	1/2:137:0,54,83:0:0:54,83:1915,2939:-395.775,-239.759,-223.503,-156.371,0,-131.386	1/2:61:0,37,24:0:0:37,24:1324,847:-177.293,-69.324,-58.1859,-108.324,0,-101.099	1/1:295:0,295,0:0:0:295,0:10497,0:-944.649,-88.8039,0,-944.649,-88.8039,-944.649	1/1:154:0,154,0:0:0:154,0:5446,0:-490.27,-46.3586,0,-490.27,-46.3586,-490.27	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	1/2:274:0,138,136:0:0:138,136:4919,4808:-792.9,-391.937,-350.395,-401.317,0,-360.377	1/2:334:0,187,147:0:0:187,147:6678,5197:-968.069,-423.621,-367.328,-544.803,0,-500.551	1/1:61:0,61,0:0:0:61,0:2183,0:-196.735,-18.3628,0,-196.735,-18.3628,-196.735	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:16:0,16,0:0:0:16,0:563,0:-50.9992,-4.81648,0,-50.9992,-4.81648,-50.9992	.:.:.:.:.:.:.:.	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:10:0,5,5:0:0:5,5:180,171:-28.9164,-14.2203,-12.7152,-15.0469,0,-13.5418	1/2:110:0,59,51:0:0:59,51:2097,1788:-316.732,-145.847,-128.086,-171.238,0,-155.886	1/2:140:0,76,64:0:0:76,64:2719,2276:-407.555,-185.837,-162.958,-222.075,0,-202.809	1/2:51:0,31,20:0:0:31,20:1084,707:-146.116,-57.934,-48.602,-88.5342,0,-82.5136	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:147:0,83,64:0:0:83,64:2963,2252:-425.24,-183.676,-158.69,-241.918,0,-222.652	1/2:22:0,14,8:0:0:14,8:504,284:-64.6221,-23.4951,-19.2807,-41.4837,0,-39.0754	1/2:107:0,51,56:0:0:51,56:1807,1965:-307.471,-160.265,-144.913,-147.558,0,-130.701	1/2:37:0,27,10:0:0:27,10:972,356:-108.684,-29.3709,-21.2431,-79.6701,0,-76.6598	1/2:18:0,8,10:0:0:8,10:288,351:-52.4197,-28.9164,-26.5081,-23.8592,0,-20.8489	1/1:100:0,100,0:0:0:100,0:3554,0:-320.069,-30.103,0,-320.069,-30.103,-320.069	1/1:91:0,91,0:0:0:91,0:3255,0:-293.17,-27.3937,0,-293.17,-27.3937,-293.17	1/1:182:1,181,0:1:36:181,0:6460,0:-577.889,-51.1892,0,-578.19,-54.4864,-581.128	1/2:62:0,28,34:0:0:28,34:993,1211:-179.959,-99.0605,-90.6317,-81.2537,0,-71.0186	1/2:81:0,38,43:0:0:38,43:1360,1510:-234.154,-123.247,-111.808,-111.261,0,-98.3172	1/2:145:0,71,74:0:0:71,74:2524,2562:-414.237,-208.552,-187.179,-206.036,0,-183.76	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:181:0,181,0:0:0:181,0:6467,0:-582.117,-54.4864,0,-582.117,-54.4864,-582.117	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:9:0,3,6:0:0:3,6:108,203:-25.6145,-16.795,-15.8919,-9.17208,0,-7.3659	1/2:90:0,51,39:0:0:51,39:1828,1349:-259.06,-109.963,-94.6106,-149.448,0,-137.708	1/2:45:0,20,25:0:0:20,25:720,896:-132.184,-73.4346,-67.414,-59.1082,0,-51.5824	1/2:8:0,5,3:0:0:5,3:161,93:-20.7607,-7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chr07	1430536	.	C	G	171685	PASS	AB=0.46752;ABP=40.9552;AC=139;AF=0.739362;AN=188;AO=8167;CIGAR=1X;DP=10419;DPB=10419;DPRA=12.4373;EPP=17702.7;EPPR=4677.9;GTI=1;LEN=1;MEANALT=1.09677;MQM=59.9638;MQMR=59.975;NS=94;NUMALT=1;ODDS=19.0589;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287911;QR=79272;RO=2240;RPL=5;RPP=17694;RPPR=4677.9;RPR=8162;RUN=1;SAF=1;SAP=17728.7;SAR=8166;SRF=0;SRP=4867.11;SRR=2240;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:109:55,54:55:1976:54:1915:-139.813,0,-145.302	0/1:52:26,26:26:936:26:932:-68.5453,0,-68.9059	0/1:156:93,63:93:3328:63:2248:-155.622,0,-252.777	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:47:1,46:1:36:46:1640:-144.29,-10.5501,0	0/1:103:44,59:44:1555:59:2100:-158.264,0,-108.864	0/1:88:30,58:30:1063:58:2051:-158.369,0,-69.4902	1/1:85:1,84:1:36:84:2991:-265.824,-21.9893,0	0/1:76:42,33:42:1495:33:1173:-83.0558,0,-112.024	1/1:165:0,165:0:0:165:5796:-521.76,-49.67,0	0/1:84:54,30:54:1893:30:1035:-68.1688,0,-145.357	0/1:69:51,18:51:1788:18:635:-36.7059,0,-140.429	0/1:84:55,29:55:1916:29:1027:-67.4557,0,-147.426	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:81:50,31:50:1775:31:1093:-74.2942,0,-135.649	0/1:81:52,29:52:1844:29:1044:-69.8914,0,-141.854	0/1:80:55,25:55:1936:25:851:-52.8155,0,-150.432	1/1:143:0,143:0:0:143:5064:-455.904,-43.0473,0	1/1:101:0,101:0:0:101:3536:-318.447,-30.404,0	1/1:87:0,86:0:0:86:3048:-274.191,-25.8886,0	0/1:40:28,12:28:984:12:409:-25.0942,0,-76.8295	0/1:59:27,32:27:950:32:1140:-85.1484,0,-68.0527	0/1:86:35,51:35:1256:51:1777:-134.32,0,-87.4567	0/1:79:44,35:44:1559:35:1216:-85.9591,0,-116.82	1/1:150:0,150:0:0:150:5316:-478.576,-45.1545,0	1/1:170:0,170:0:0:170:5971:-537.504,-51.1751,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	0/1:121:55,66:55:1956:66:2328:-173.355,0,-139.891	0/1:99:45,54:45:1590:54:1915:-142.824,0,-113.587	1/1:50:0,50:0:0:50:1778:-160.301,-15.0515,0	1/1:158:1,157:1:36:157:5527:-493.962,-43.9645,0	1/1:344:0,344:0:0:344:12113:-1090.04,-103.554,0	1/1:868:0,868:0:0:868:30595:-2752.61,-261.294,0	1/1:535:1,533:1:36:533:18852:-1692.63,-157.457,0	1/1:142:4,138:4:144:138:4869:-425.05,-29.4326,0	0/1:191:120,70:120:4253:70:2465:-164.674,0,-325.525	0/1:73:27,46:27:951:46:1609:-123.121,0,-63.9291	0/1:151:38,113:38:1323:113:3923:-307.792,0,-73.9105	1/1:80:0,80:0:0:80:2826:-254.579,-24.0824,0	0/1:88:45,43:45:1590:43:1539:-112.312,0,-116.898	0/1:58:22,36:22:761:36:1261:-96.3315,0,-51.3469	0/1:52:25,27:25:883:27:940:-69.2572,0,-64.1339	0/1:66:56,10:56:1966:10:356:-12.5133,0,-157.343	0/1:61:46,15:46:1602:15:506:-27.495,0,-126.102	1/1:90:0,90:0:0:90:3175:-285.975,-27.0927,0	1/1:100:0,100:0:0:100:3533:-318.179,-30.103,0	1/1:167:0,167:0:0:167:5851:-526.706,-50.272,0	0/1:88:56,32:56:1990:32:1133:-75.787,0,-152.846	0/1:76:42,34:42:1508:34:1201:-85.5162,0,-113.136	0/1:89:52,37:52:1832:37:1315:-91.8584,0,-138.366	1/1:473:0,473:0:0:473:16741:-1506.36,-142.387,0	1/1:69:0,69:0:0:69:2444:-220.214,-20.7711,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:249:10,239:10:360:239:8390:-722.371,-42.2122,0	0/1:104:58,46:58:2067:46:1640:-116.582,0,-154.993	0/1:49:33,16:33:1167:16:568:-36.7014,0,-90.5859	1/1:250:5,245:5:180:245:8570:-754.712,-58.7054,0	1/1:172:0,172:0:0:172:6098:-548.926,-51.7772,0	1/1:35:0,33:0:0:33:1159:-104.257,-9.93399,0	1/1:66:1,65:1:36:65:2244:-198.62,-16.2697,0	1/1:67:4,63:4:144:63:2234:-188.009,-6.85539,0	0/1:120:86,31:86:3075:31:1085:-62.3785,0,-241.398	1/1:101:0,99:0:0:99:3470:-312.15,-29.802,0	0/1:49:38,11:38:1364:11:380:-19.7793,0,-108.31	1/1:61:0,61:0:0:61:2176:-196.107,-18.3628,0	0/1:88:44,44:44:1576:44:1551:-113.388,0,-115.641	0/1:55:36,19:36:1283:19:672:-44.2502,0,-99.216	0/1:111:26,85:26:915:85:3007:-237.446,0,-49.2512	1/1:65:0,65:0:0:65:2252:-202.94,-19.567,0	0/1:62:43,19:43:1509:19:671:-42.0519,0,-117.437	1/1:119:0,119:0:0:119:4199:-378.093,-35.8226,0	0/1:61:31,30:31:1108:30:1044:-75.9051,0,-81.6682	0/1:29:26,3:26:908:3:108:-1.3453,0,-73.3026	1/1:87:0,87:0:0:87:3094:-278.688,-26.1896,0	0/1:65:27,38:27:951:38:1333:-100.701,0,-66.3341	0/1:43:27,16:27:968:16:567:-38.4164,0,-74.4931	1/1:37:0,37:0:0:37:1317:-118.83,-11.1381,0	1/1:262:2,260:2:68:260:9165:-818.37,-72.4122,0	1/1:77:0,77:0:0:77:2706:-243.785,-23.1793,0	1/1:44:0,44:0:0:44:1547:-139.518,-13.2453,0	1/1:114:0,114:0:0:114:3997:-359.922,-34.3174,0	0/1:87:54,33:54:1892:33:1166:-79.056,0,-144.366	0/1:68:47,21:47:1662:21:743:-46.7233,0,-129.396	1/1:100:0,99:0:0:99:3472:-312.332,-29.802,0	0/1:161:98,63:98:3435:63:2191:-148.975,0,-260.898	1/1:34:0,34:0:0:34:1196:-107.913,-10.235,0	1/1:72:0,72:0:0:72:2547:-229.482,-21.6742,0	1/1:61:0,61:0:0:61:2129:-191.875,-18.3628,0	0/1:166:36,130:36:1267:130:4614:-365.453,0,-64.3609	0/1:192:55,137:55:1937:137:4846:-378.499,0,-116.807	0/1:91:65,26:65:2301:26:914:-55.1809,0,-179.956	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:70:1,69:1:36:69:2399:-212.563,-17.4738,0
chr07	1430548	.	C	T	36964	PASS	AB=0.526354;ABP=27.6184;AC=49;AF=0.260638;AN=188;AO=2181;CIGAR=1X;DP=10322;DPB=10322;DPRA=0.729311;EPP=4678.39;EPPR=17214.8;GTI=1;LEN=1;MEANALT=1.10714;MQM=59.9807;MQMR=59.9739;NS=94;NUMALT=1;ODDS=20.6012;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77742;QR=290014;RO=8133;RPL=2174;RPP=4678.39;RPPR=17214.8;RPR=7;RUN=1;SAF=0;SAP=4738.99;SAR=2181;SRF=2;SRP=17646.2;SRR=8131;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:108:55,53:55:1964:53:1892:-138.047,0,-144.524	0/1:50:25,25:25:882:25:896:-65.9089,0,-64.645	0/1:155:62,92:62:2211:92:3281:-248.792,0,-152.536	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:44:43,0:43:1540:0:0:0,-12.9443,-138.602	0/1:102:58,44:58:2076:44:1540:-108.148,0,-156.405	0/1:86:58,28:58:2080:28:981:-62.7125,0,-161.582	0/0:86:85,0:85:3036:0:0:0,-25.5875,-273.111	0/1:74:34,40:34:1224:40:1432:-106.901,0,-88.1908	0/0:162:162,0:162:5799:0:0:0,-48.7669,-522.023	0/1:86:31,55:31:1099:55:1976:-152.226,0,-73.3309	0/1:68:19,49:19:676:49:1748:-137.134,0,-40.698	0/1:84:31,53:31:1095:53:1888:-144.912,0,-73.5726	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:78:31,47:31:1086:47:1680:-128.007,0,-74.5672	0/1:80:29,51:29:1027:51:1824:-140.359,0,-68.6598	0/1:77:25,52:25:896:52:1863:-144.769,0,-57.781	0/0:143:143,0:143:5099:0:0:0,-43.0473,-459.052	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.242	0/0:88:88,0:88:3135:0:0:0,-26.4906,-282.376	0/1:38:12,26:12:432:26:932:-72.7597,0,-27.7821	0/1:60:32,28:32:1152:28:1000:-72.2536,0,-85.9283	0/1:83:50,33:50:1779:33:1176:-81.1623,0,-135.407	0/1:74:32,42:32:1148:42:1496:-112.658,0,-81.3536	0/0:148:148,0:148:5287:0:0:0,-44.5524,-475.966	0/0:167:167,0:167:5960:0:0:0,-50.272,-536.507	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:120:67,53:67:2388:53:1874:-132.811,0,-179.054	0/1:96:53,43:53:1896:43:1536:-109.634,0,-142.019	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:159:158,1:158:5638:1:36:0,-44.2655,-503.942	0/0:342:342,0:342:12181:0:0:0,-102.952,-1096.14	0/0:855:855,0:855:30438:0:0:0,-257.381,-2738.41	0/0:533:533,0:533:19052:0:0:0,-160.449,-1714.24	0/0:145:140,4:140:5000:4:144:0,-30.3945,-436.835	0/1:189:72,117:72:2572:117:4188:-320.205,0,-174.835	0/1:72:46,26:46:1631:26:928:-62.1641,0,-125.403	0/1:153:115,37:115:4059:37:1313:-72.4511,0,-319.48	0/0:79:79,0:79:2813:0:0:0,-23.7814,-253.408	0/1:88:44,44:44:1576:44:1576:-115.641,0,-115.641	0/1:58:36,22:36:1275:22:792:-54.1459,0,-97.5925	0/1:51:27,24:27:964:24:852:-61.6479,0,-71.7241	0/1:66:10,56:10:356:56:2012:-161.485,0,-12.5133	0/1:58:14,44:14:504:44:1576:-124.672,0,-28.2384	0/0:92:92,0:92:3278:0:0:0,-27.6948,-295.24	0/0:96:96,0:96:3419:0:0:0,-28.8989,-307.925	0/0:166:166,0:166:5887:0:0:0,-49.971,-529.943	0/1:86:32,53:32:1144:53:1869:-142.628,0,-77.4106	0/1:76:34,42:34:1211:42:1509:-113.226,0,-86.4172	0/1:87:37,50:37:1328:50:1779:-134.203,0,-93.6317	0/0:476:476,0:476:16990:0:0:0,-143.29,-1528.61	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:234:225,9:225:7988:9:310:0,-42.2076,-690.713	0/1:98:44,53:44:1576:53:1869:-138.928,0,-112.572	0/1:46:16,30:16:576:30:1060:-81.8639,0,-38.3276	0/0:253:249,3:249:8867:3:108:0,-66.1143,-787.805	0/0:170:170,0:170:6080:0:0:0,-51.1751,-547.303	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:65:64,1:64:2284:1:36:0,-15.9687,-202.224	0/0:68:64,4:64:2284:4:129:0,-8.54238,-193.894	0/1:119:32,87:32:1125:87:3075:-241.156,0,-65.7335	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.52	0/1:48:11,37:11:392:37:1328:-105.373,0,-21.1706	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/1:89:45,44:45:1604:44:1576:-115.34,0,-117.858	0/1:56:19,37:19:684:37:1324:-102.604,0,-45.0326	0/1:109:82,27:82:2915:27:957:-53.6316,0,-229.774	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.277	0/1:61:19,42:19:680:42:1500:-116.932,0,-43.1663	0/0:118:118,0:118:4201:0:0:0,-35.5215,-378.268	0/1:58:29,29:29:1040:29:1036:-76.0942,0,-76.4546	0/1:27:3,24:3:104:24:841:-67.8786,0,-1.575	0/0:88:88,0:88:3129:0:0:0,-26.4906,-281.835	0/1:66:39,27:39:1392:27:968:-67.5612,0,-105.711	0/1:41:16,25:16:576:25:896:-68.6181,0,-39.8328	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:264:262,2:262:9321:2:72:0,-72.6352,-832.005	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.995	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:113:113,0:113:4013:0:0:0,-34.0164,-361.36	0/1:88:34,54:34:1216:54:1928:-147.306,0,-83.2559	0/1:67:21,46:21:756:46:1643:-127.99,0,-48.1982	0/0:99:99,0:99:3527:0:0:0,-29.802,-317.639	0/1:160:61,99:61:2192:99:3536:-270.285,0,-149.251	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.769	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:159:123,36:123:4382:36:1288:-68.3598,0,-346.691	0/1:189:137,52:137:4869:52:1872:-111.864,0,-381.468	0/1:95:26,69:26:915:69:2449:-192.066,0,-54.0677	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:71:70,1:70:2516:1:32:0,-18.1738,-223.492
chr07	1462930	.	C	T	87529.6	PASS	AB=0.532937;ABP=69.5249;AC=53;AF=0.284946;AN=186;AO=3766;CIGAR=1X;DP=11703;DPB=11703;DPRA=1.33216;EPP=8172.09;EPPR=17227.1;GTI=3;LEN=1;MEANALT=1.01786;MQM=59.978;MQMR=59.9972;NS=93;NUMALT=1;ODDS=0.1719;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134503;QR=279836;RO=7936;RPL=1773;RPP=30.9177;RPPR=16.7396;RPR=1993;RUN=1;SAF=1772;SAP=31.4274;SAR=1994;SRF=3855;SRP=16.9859;SRR=4081;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:17,26:17:608:26:927:-70.8031,0,-42.1077	0/1:170:72,98:72:2546:98:3519:-265.744,0,-178.209	0/1:133:63,70:63:2208:70:2497:-184.944,0,-158.947	0/1:220:99,121:99:3492:121:4304:-321.309,0,-248.263	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:35:35,0:35:1230:0:0:0,-10.536,-111.002	0/1:142:65,77:65:2324:77:2751:-205.085,0,-166.674	0/1:197:69,128:69:2448:128:4570:-352.161,0,-161.27	0/0:139:139,0:139:4895:0:0:0,-41.8432,-440.706	0/1:197:114,83:114:4051:83:2939:-205.441,0,-305.477	0/0:118:118,0:118:4131:0:0:0,-35.5215,-371.975	0/1:171:80,91:80:2768:91:3240:-240.344,0,-197.883	0/1:166:69,97:69:2451:97:3468:-261.971,0,-170.874	0/1:113:48,65:48:1699:65:2328:-175.763,0,-119.179	0/0:143:143,0:143:5072:0:0:0,-43.0473,-456.625	0/1:125:59,66:59:2065:66:2363:-175.299,0,-148.489	0/1:104:54,50:54:1912:50:1796:-130.615,0,-141.05	0/1:100:59,41:59:2087:41:1468:-102.313,0,-157.997	0/0:63:63,0:63:2202:0:0:0,-18.9649,-198.443	0/1:105:60,45:60:2113:45:1616:-114.122,0,-158.827	0/0:257:257,0:257:9094:0:0:0,-77.3647,-818.444	0/1:26:5,21:5:176:21:726:-57.83,0,-8.35824	0/1:137:63,74:63:2213:74:2660:-198.404,0,-158.19	0/1:96:47,49:47:1642:49:1764:-130.145,0,-119.165	0/1:38:18,20:18:644:20:707:-52.5154,0,-46.8515	0/0:342:341,1:341:11946:1:36:0,-99.354,-1071.42	0/0:308:308,0:308:10841:0:0:0,-92.7172,-975.608	0/0:67:67,0:67:2364:0:0:0,-20.169,-213.017	0/1:229:116,113:116:4101:113:4031:-294.042,0,-300.34	0/1:150:81,69:81:2844:69:2472:-177.579,0,-211.042	0/0:165:165,0:165:5809:0:0:0,-49.6699,-522.929	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:9:2,7:2:57:7:239:-19.1334,0,-2.70404	0/1:386:179,207:179:6282:207:7405:-550.296,0,-449.283	0/1:107:47,60:47:1658:60:2151:-161.642,0,-117.296	0/1:91:44,47:44:1567:47:1665:-122.742,0,-113.927	.:.:.:.:.:.:.:.	0/1:177:80,97:80:2837:97:3463:-258.6,0,-202.286	0/1:87:43,44:43:1540:44:1567:-115.131,0,-112.703	0/1:109:56,53:56:1950:53:1900:-138.466,0,-142.96	0/1:149:73,76:73:2586:76:2727:-200.819,0,-188.136	0/1:137:73,64:73:2495:64:2296:-165.66,0,-183.554	0/0:88:88,0:88:3111:0:0:0,-26.4906,-280.217	0/0:81:81,0:81:2817:0:0:0,-24.3834,-253.767	0/0:170:170,0:170:5981:0:0:0,-51.1751,-538.4	0/1:117:52,65:52:1860:65:2303:-172.308,0,-132.459	0/1:156:79,77:79:2824:77:2742:-200.061,0,-207.439	0/1:81:40,41:40:1380:41:1463:-107.582,0,-100.108	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.425	0/0:63:63,0:63:2203:0:0:0,-18.9649,-198.533	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:145:59,86:59:2069:86:3050:-231.078,0,-142.83	0/1:38:23,15:23:785:15:536:-37.1357,0,-59.5241	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:105:105,0:105:3716:0:0:0,-31.6081,-334.643	0/0:169:167,2:167:5840:2:72:0,-44.0373,-518.88	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:324:148,176:148:5234:176:6297:-469.288,0,-373.667	0/0:144:144,0:144:5092:0:0:0,-43.3483,-458.426	0/1:113:57,56:57:2035:56:2000:-146.257,0,-149.405	0/0:72:72,0:72:2508:0:0:0,-21.6742,-225.97	0/1:186:84,102:84:2969:102:3660:-273.612,0,-211.449	0/1:136:43,93:43:1514:93:3328:-258.798,0,-95.6115	0/1:53:25,28:25:891:28:1004:-74.7213,0,-64.5542	0/0:102:102,0:102:3621:0:0:0,-30.7051,-326.096	0/1:122:55,67:55:1964:67:2412:-180.61,0,-140.31	0/0:37:37,0:37:1301:0:0:0,-11.1381,-117.389	0/1:122:72,50:72:2547:50:1758:-121.776,0,-192.756	0/1:193:89,104:89:3129:104:3699:-275.014,0,-223.737	0/0:227:227,0:227:8059:0:0:0,-68.3338,-725.333	0/1:262:121,141:121:4297:141:5034:-374.334,0,-308.039	0/1:59:33,26:33:1162:26:936:-66.7987,0,-87.1245	0/0:167:167,0:167:5925:0:0:0,-50.272,-533.361	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:112:112,0:112:3938:0:0:0,-33.7154,-354.615	0/0:86:86,0:86:3005:0:0:0,-25.8886,-270.679	0/0:218:218,0:218:7698:0:0:0,-65.6245,-692.862	0/1:178:81,97:81:2873:97:3460:-258.029,0,-205.223	0/1:160:75,85:75:2657:85:3037:-225.394,0,-191.211	0/0:174:174,0:174:6177:0:0:0,-52.3792,-556.03	0/1:313:138,175:138:4886:175:6250:-468.373,0,-345.675	0/0:83:83,0:83:2948:0:0:0,-24.9855,-265.553	0/0:137:137,0:137:4816:0:0:0,-41.2411,-433.6	0/0:100:100,0:100:3547:0:0:0,-30.103,-319.441	0/1:78:40,38:40:1407:38:1349:-98.229,0,-103.446	0/1:154:78,76:78:2738:76:2728:-199.404,0,-200.303	0/1:134:41,93:41:1427:93:3322:-258.851,0,-88.3842	0/0:253:251,1:251:8777:1:36:0,-72.5662,-786.391	0/0:258:258,0:258:9111:0:0:0,-77.6657,-819.975
chr07	1463758	.	ACCG	ACCA,GCCA	193502	PASS	AB=0.504607,0.490154;ABP=4.03072,7.67141;AC=134,54;AF=0.712766,0.287234;AN=188;AO=6433,2727;CIGAR=3M1X,1X2M1X;DP=9209;DPB=9209;DPRA=25.0027,1.35281;EPP=13972.1,5924.62;EPPR=11.6962;GTI=2;LEN=1,4;MEANALT=2.05435,2.50877;MQM=59.9695,59.8577;MQMR=60;NS=94;NUMALT=2;ODDS=0.406042;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=230457,96057;QR=137;RO=4;RPL=0,0;RPP=13972.1,5924.62;RPPR=11.6962;RPR=6433,2727;RUN=1,1;SAF=6433,2727;SAP=13972.1,5924.62;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:15:0,13,2:0:0:13,2:468,72:-44.4211,-6.23466,-2.32127,-38.5463,0,-37.9442	1/2:109:0,80,29:0:0:80,29:2849,1026:-316.121,-83.9106,-59.8282,-232.565,0,-223.835	1/2:136:0,39,94:0:0:39,94:1404,3258:-379.319,-264.756,-253.015,-114.559,0,-86.2625	1/2:189:0,86,101:0:0:86,101:3088,3576:-543.243,-291.369,-265.48,-251.953,0,-221.549	1/1:74:0,73,1:0:0:73,1:2616,36:-235.323,-21.9752,0,-232.386,-18.6779,-232.085	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/2:99:0,58,41:0:0:58,41:2084,1457:-289.058,-119.045,-101.585,-170.37,0,-158.028	1/2:110:0,65,42:0:0:65,42:2336,1479:-311.064,-120.484,-100.917,-190.659,0,-178.015	1/1:76:0,75,0:0:0:75,0:2688,0:-241.913,-22.5773,0,-241.913,-22.5773,-241.913	1/2:107:0,63,44:0:0:63,44:2252,1531:-308.456,-124.834,-105.869,-183.974,0,-170.729	1/1:91:0,91,0:0:0:91,0:3262,0:-293.796,-27.3937,0,-293.796,-27.3937,-293.796	1/2:90:0,42,48:0:0:42,48:1508,1678:-259.873,-136.856,-124.213,-123.371,0,-108.922	1/2:68:0,30,38:0:0:30,38:1080,1335:-197.129,-109.002,-99.9713,-88.4823,0,-77.0432	1/2:89:0,57,32:0:0:57,32:2025,1138:-258.102,-93.0955,-75.9368,-165.362,0,-155.729	1/1:70:0,70,0:0:0:70,0:2520,0:-227.051,-21.0721,0,-227.051,-21.0721,-227.051	1/2:204:0,101,103:0:0:101,103:3620,3617:-589.979,-294.735,-264.33,-295.6,0,-264.594	1/2:65:0,41,24:0:0:41,24:1468,842:-188.434,-68.7153,-56.3731,-120.072,0,-112.847	1/2:48:0,35,13:0:0:35,13:1256,463:-140.276,-37.822,-27.286,-102.809,0,-98.8958	1/1:56:0,56,0:0:0:56,0:2012,0:-181.353,-16.8577,0,-181.353,-16.8577,-181.353	1/2:185:0,87,96:0:0:87,96:3120,3415:-532.746,-278.267,-252.077,-254.477,0,-225.578	1/1:130:0,129,0:0:0:129,0:4628,0:-416.322,-38.8329,0,-416.322,-38.8329,-416.322	1/2:114:0,42,71:0:0:42,71:1508,2499:-326.566,-203.55,-190.907,-123.129,0,-101.756	1/2:102:0,31,71:0:0:31,71:1108,2495:-293.774,-203.43,-194.098,-90.6991,0,-69.3259	1/2:91:0,48,43:0:0:48,43:1724,1534:-266.047,-125.409,-110.959,-140.996,0,-128.052	1/2:71:0,39,32:0:0:39,32:1400,1123:-205.949,-91.7444,-80.0042,-114.559,0,-104.926	1/1:333:0,328,1:0:0:328,1:11764,35:-1058.3,-98.7378,0,-1055.45,-95.8827,-1055.15	1/1:215:0,214,0:0:0:214,0:7668,0:-689.787,-64.4204,0,-689.787,-64.4204,-689.787	1/1:52:0,52,0:0:0:52,0:1868,0:-168.399,-15.6536,0,-168.399,-15.6536,-168.399	1/2:210:0,106,104:0:0:106,104:3788,3678:-608.773,-299.918,-268.009,-309.21,0,-277.903	1/2:151:0,93,57:0:0:93,57:3327,2013:-435.161,-163.865,-135.869,-271.232,0,-254.073	1/1:85:0,83,0:0:0:83,0:2957,0:-265.974,-24.9855,0,-265.974,-24.9855,-265.974	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:7:0,7,0:0:0:7,0:244,0:-22.2994,-2.10721,0,-22.2994,-2.10721,-22.2994	2/2:5:0,0,5:0:0:0,5:0,179:-16.4604,-16.4604,-16.4604,-1.50515,-1.50515,0	1/2:195:0,101,94:0:0:101,94:3632,3323:-567.316,-270.993,-240.588,-296.68,0,-268.383	1/2:257:0,123,132:0:0:123,132:4407,4669:-739.7,-380.281,-343.255,-359.415,0,-319.679	1/2:65:0,36,28:0:0:36,28:1296,994:-186.855,-81.1029,-70.2658,-105.865,0,-97.4366	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:121:0,74,46:0:0:74,46:2652,1605:-346.885,-130.587,-108.311,-216.349,0,-202.502	1/2:21:0,11,10:0:0:11,10:388,359:-61.2335,-29.6433,-26.332,-31.946,0,-28.9357	1/2:156:1,87,68:1:30:87,68:3128,2363:-444.59,-189.688,-165.897,-252.857,0,-234.785	1/2:65:0,42,23:0:0:42,23:1512,816:-190.212,-66.8375,-54.1942,-123.731,0,-116.808	1/2:57:0,28,28:0:0:28,28:1008,988:-162.696,-80.4453,-72.0164,-82.2477,0,-73.8188	1/1:85:0,85,0:0:0:85,0:3055,0:-275.178,-25.5876,0,-275.178,-25.5876,-275.178	1/1:125:0,124,0:0:0:124,0:4432,0:-398.799,-37.3277,0,-398.799,-37.3277,-398.799	1/1:205:0,205,0:0:0:205,0:7314,0:-658.311,-61.7112,0,-658.311,-61.7112,-658.311	1/2:103:0,61,42:0:0:61,42:2176,1500:-300.039,-122.652,-104.289,-177.744,0,-165.1	1/2:105:0,47,58:0:0:47,58:1676,2045:-303.484,-166.862,-152.713,-136.977,0,-119.517	1/2:144:0,76,67:0:0:76,67:2705,2364:-412.951,-192.49,-169.612,-220.455,0,-200.286	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:132:0,131,0:0:0:131,0:4692,0:-422.14,-39.4349,0,-422.14,-39.4349,-422.14	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:16:0,15,1:0:0:15,1:540,36:-48.5767,-4.51545,0,-45.6393,-1.21821,-45.3383	1/2:78:0,34,44:0:0:34,44:1212,1530:-223.543,-124.745,-114.51,-99.1513,0,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chr07	1463869	.	C	G	145404	PASS	AB=0.454897;ABP=94.4869;AC=135;AF=0.718085;AN=188;AO=5560;CIGAR=1X;DP=8395;DPB=8395;DPRA=0;EPP=17.7091;EPPR=158.72;GTI=5;LEN=1;MEANALT=1.08511;MQM=59.9752;MQMR=59.9823;NS=94;NUMALT=1;ODDS=0.261336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198561;QR=101029;RO=2824;RPL=2877;RPP=17.7091;RPPR=158.72;RPR=2683;RUN=1;SAF=0;SAP=12076.4;SAR=5560;SRF=0;SRP=6135.25;SRR=2824;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:76:30,46:30:1076:46:1656:-126.45,0,-74.2746	0/1:60:31,29:31:1116:29:1040:-75.8526,0,-82.6899	0/1:156:68,87:68:2440:87:3106:-232.786,0,-172.769	0/1:256:182,74:182:6513:74:2647:-161.412,0,-509.189	1/1:75:0,75:0:0:75:2679:-241.355,-22.5773,0	1/1:11:0,11:0:0:11:391:-35.5295,-3.31133,0	0/1:74:42,32:42:1508:32:1136:-80.2727,0,-113.738	0/1:117:69,48:69:2454:48:1687:-116.893,0,-185.893	1/1:107:0,105:0:0:105:3729:-335.415,-31.6082,0	0/1:67:40,27:40:1421:27:968:-67.2684,0,-108.016	1/1:53:0,53:0:0:53:1889:-170.286,-15.9546,0	0/1:126:62,64:62:2210:64:2295:-168.611,0,-161.234	0/1:90:33,57:33:1184:57:2024:-155.338,0,-79.7756	0/1:66:43,23:43:1516:23:819:-54.1636,0,-116.862	1/1:91:0,91:0:0:91:3254:-293.079,-27.3937,0	0/1:87:38,49:38:1349:49:1764:-132.854,0,-95.5187	0/1:37:22,15:22:788:15:540:-37.7984,0,-60.1067	0/1:30:15,15:15:540:15:531:-39.091,0,-39.9056	1/1:45:0,45:0:0:45:1619:-146,-13.5464,0	0/1:218:111,107:111:3992:107:3818:-278.191,0,-293.844	1/1:139:0,139:0:0:139:4937:-444.482,-41.8432,0	0/1:99:65,34:65:2332:34:1209:-79.3135,0,-180.338	0/1:142:79,63:79:2819:63:2247:-159.702,0,-211.146	0/1:74:34,40:34:1209:40:1440:-107.622,0,-86.8379	0/1:64:30,34:30:1076:34:1220:-90.8409,0,-77.8869	1/1:218:2,216:2:72:216:7724:-688.355,-58.7878,0	1/1:242:0,242:0:0:242:8679:-781.1,-72.8493,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:252:154,98:154:5516:98:3486:-238.091,0,-420.704	0/1:136:84,52:84:3020:52:1842:-125.118,0,-231.09	1/1:73:0,73:0:0:73:2590:-233.347,-21.9752,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:210:89,121:89:3196:121:4321:-325.848,0,-224.646	0/1:149:91,58:91:3236:58:2072:-141.866,0,-246.607	0/1:48:18,30:18:621:30:1063:-81.5314,0,-41.7615	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:125:70,55:70:2501:55:1967:-139.676,0,-187.712	0/1:28:10,18:10:356:18:648:-50.223,0,-23.9524	0/1:156:98,58:98:3528:58:2076:-140.15,0,-270.767	0/1:55:24,31:24:864:31:1116:-84.195,0,-61.5259	0/1:55:31,24:31:1097:24:842:-59.5396,0,-82.4814	1/1:96:0,96:0:0:96:3452:-310.891,-28.8989,0	1/1:115:0,115:0:0:115:4087:-368.016,-34.6185,0	1/1:127:0,127:0:0:127:4539:-408.677,-38.2308,0	0/1:72:44,28:44:1584:28:1000:-68.6412,0,-121.177	0/1:123:62,61:62:2228:61:2172:-158.717,0,-163.757	0/1:150:81,68:81:2889:68:2431:-173.832,0,-215.032	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:102:0,102:0:0:102:3656:-329.244,-30.7051,0	1/1:68:0,68:0:0:68:2410:-217.156,-20.47,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:148:67,81:67:2393:81:2889:-215.693,0,-171.073	0/1:56:36,20:36:1277:20:716:-47.91,0,-98.3734	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:67:0,66:0:0:66:2362:-212.603,-19.868,0	1/1:96:0,96:0:0:96:3429:-308.821,-28.8989,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:197:127,70:127:4545:70:2493:-165.32,0,-349.912	1/1:169:2,165:2:72:165:5850:-519.851,-43.7202,0	0/1:64:37,27:37:1320:27:955:-66.9989,0,-99.8298	1/1:95:0,95:0:0:95:3402:-306.395,-28.5979,0	0/1:191:94,97:94:3368:97:3484:-256.274,0,-245.839	0/1:149:98,51:98:3524:51:1807:-118.056,0,-272.515	0/1:30:14,14:14:504:14:504:-36.9094,0,-36.9094	1/1:35:0,34:0:0:34:1224:-110.185,-10.235,0	0/1:49:19,30:19:684:30:1064:-81.319,0,-47.1399	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:74:35,38:35:1260:38:1364:-100.726,0,-91.3705	0/1:77:47,30:47:1665:30:1072:-73.6131,0,-126.956	1/1:119:0,119:0:0:119:4250:-382.678,-35.8226,0	0/1:168:115,53:115:4132:53:1904:-121.065,0,-321.489	0/1:78:38,40:38:1345:40:1427:-105.246,0,-97.8678	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:79:1,78:1:36:78:2792:-247.922,-20.1831,0	1/1:108:0,108:0:0:108:3871:-348.584,-32.5112,0	1/1:226:2,224:2:72:224:7973:-710.755,-61.1961,0	0/1:66:24,42:24:864:42:1499:-115.336,0,-58.2146	0/1:88:36,52:36:1288:52:1841:-139.477,0,-89.7329	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:130:62,68:62:2224:68:2444:-181.081,0,-161.29	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	1/1:83:0,83:0:0:83:2956:-266.273,-24.9855,0	0/1:49:20,29:20:690:29:1020:-77.3589,0,-47.6663	0/1:81:44,37:44:1571:37:1308:-93.6353,0,-117.297	0/1:66:47,19:47:1692:19:680:-41.5538,0,-132.699	1/1:149:0,149:0:0:149:5348:-481.451,-44.8535,0	1/1:129:0,129:0:0:129:4619:-415.873,-38.8329,0
chr07	1463902	.	A	T	168086	PASS	AB=0.457725;ABP=102.889;AC=135;AF=0.718085;AN=188;AO=6884;CIGAR=1X;DP=10416;DPB=10416;DPRA=0;EPP=14951.4;EPPR=7672.65;GTI=5;LEN=1;MEANALT=1;MQM=59.9731;MQMR=59.9943;NS=94;NUMALT=1;ODDS=1.1098;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246703;QR=126471;RO=3532;RPL=5535;RPP=5530.3;RPPR=2839.64;RPR=1349;RUN=1;SAF=1349;SAP=5530.3;SAR=5535;SRF=692;SRP=2839.64;SRR=2840;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:30,48:30:1076:48:1712:-130.885,0,-73.6725	0/1:101:53,48:53:1904:48:1728:-125.401,0,-141.234	0/1:173:80,93:80:2845:93:3332:-247.984,0,-204.209	0/1:286:200,86:200:7140:86:3061:-189.624,0,-556.566	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:87:54,33:54:1932:33:1184:-80.6787,0,-147.967	0/1:148:85,63:85:3048:63:2260:-159.11,0,-229.997	1/1:123:1,122:1:36:122:4373:-390.142,-33.4284,0	0/1:94:52,42:52:1860:42:1508:-107.718,0,-139.383	1/1:60:0,60:0:0:60:2133:-192.236,-18.0618,0	0/1:143:69,74:69:2468:74:2664:-196.401,0,-179.327	0/1:108:46,62:46:1656:62:2232:-168.632,0,-116.817	0/1:79:50,29:50:1800:29:1040:-70.133,0,-138.501	1/1:109:2,107:2:72:107:3825:-337.609,-25.9755,0	0/1:98:45,53:45:1612:53:1893:-141.145,0,-115.869	0/1:45:25,20:25:900:20:720:-51.5824,0,-67.7747	0/1:42:23,19:23:828:19:680:-48.8859,0,-62.2009	1/1:53:2,51:2:72:51:1828:-157.964,-9.11787,0	0/1:314:155,159:155:5522:159:5696:-418.215,0,-402.582	1/1:169:0,169:0:0:169:6037:-543.434,-50.8741,0	0/1:136:100,36:100:3572:36:1288:-75.2835,0,-280.748	0/1:177:95,82:95:3397:82:2944:-211.893,0,-252.604	0/1:98:46,52:46:1652:52:1868:-138.898,0,-119.468	0/1:72:35,37:35:1260:37:1324:-97.7879,0,-92.0313	1/1:287:3,284:3:93:284:10208:-909.965,-77.7189,0	1/1:281:0,281:0:0:281:10041:-903.626,-84.5894,0	1/1:44:2,42:2:72:42:1508:-129.178,-6.4086,0	0/1:323:191,132:191:6836:132:4744:-329.883,0,-518.078	0/1:169:102,67:102:3649:67:2408:-166.102,0,-277.739	1/1:99:0,99:0:0:99:3544:-319.169,-29.802,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:246:105,141:105:3764:141:5053:-380.859,0,-264.906	0/1:196:112,84:112:4016:84:2994:-210.37,0,-302.626	0/1:60:26,34:26:932:34:1224:-92.4052,0,-66.1371	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:164:96,68:96:3440:68:2417:-168.416,0,-260.444	0/1:30:10,20:10:360:20:720:-56.0979,0,-23.7134	0/1:185:121,64:121:4328:64:2296:-151.211,0,-334.006	0/1:70:34,36:34:1211:36:1292:-95.5117,0,-88.2234	0/1:67:35,32:35:1256:32:1152:-83.8211,0,-93.1763	1/1:121:2,119:2:72:119:4276:-378.18,-29.5879,0	1/1:125:0,125:0:0:125:4473:-402.738,-37.6288,0	1/1:148:0,148:0:0:148:5292:-476.416,-44.5524,0	0/1:93:58,35:58:2068:35:1260:-85.7097,0,-158.395	0/1:144:71,73:71:2529:73:2620:-192.699,0,-184.512	0/1:188:102,86:102:3656:86:3076:-220.475,0,-272.65	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:126:1,125:1:36:125:4488:-400.489,-34.3315,0	1/1:82:0,82:0:0:82:2952:-265.913,-24.6845,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:180:81,99:81:2908:99:3545:-265.071,0,-207.77	0/1:72:45,27:45:1596:27:968:-65.7632,0,-122.256	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:101:1,100:1:36:100:3576:-318.427,-26.8058,0	1/1:137:2,135:2:72:135:4852:-429.939,-34.4044,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:240:144,96:144:5152:96:3417:-235.497,0,-391.574	1/1:223:2,221:2:72:221:7928:-706.705,-60.293,0	0/1:67:36,31:36:1288:31:1116:-80.5827,0,-96.0546	1/1:107:0,107:0:0:107:3852:-346.874,-32.2102,0	0/1:240:115,125:115:4128:125:4480:-331.12,0,-299.456	0/1:206:139,67:139:4996:67:2382:-152.622,0,-387.773	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	1/1:45:0,45:0:0:45:1608:-145.008,-13.5464,0	0/1:85:41,44:41:1476:44:1584:-117.264,0,-107.549	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:96:48,48:48:1720:48:1720:-126.187,0,-126.187	0/1:94:55,39:55:1976:39:1404:-98.3625,0,-149.818	1/1:157:0,157:0:0:157:5620:-505.922,-47.2617,0	0/1:215:140,75:140:5017:75:2666:-175.461,0,-386.953	0/1:103:49,54:49:1752:54:1944:-144.23,0,-126.958	1/1:102:0,102:0:0:102:3664:-329.963,-30.7051,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:95:2,93:2:72:93:3348:-294.699,-21.7611,0	1/1:122:1,121:1:36:121:4344:-387.536,-33.1274,0	1/1:260:4,256:4:144:256:9159:-810.952,-64.9542,0	0/1:95:30,65:30:1080:65:2336:-181.901,0,-68.9154	0/1:100:46,54:46:1652:54:1940:-144.773,0,-118.865	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	0/1:156:72,84:72:2592:84:3020:-225.069,0,-186.567	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:88:4,84:4:144:84:3020:-258.716,-13.177,0	1/1:97:5,92:5:180:92:3281:-278.957,-12.6478,0	0/1:53:22,31:22:788:31:1116:-84.7971,0,-55.2902	0/1:95:48,47:48:1716:47:1680:-122.889,0,-126.128	0/1:73:49,24:49:1760:24:848:-54.5572,0,-136.709	1/1:193:5,188:5:176:188:6729:-589.498,-41.9138,0	1/1:148:4,144:4:144:144:5164:-451.586,-31.2388,0
chr07	1468833	.	C	A	161225	PASS	AB=0.483283;ABP=19.9262;AC=135;AF=0.718085;AN=188;AO=7940;CIGAR=1X;DP=11545;DPB=11545;DPRA=0;EPP=17244.5;EPPR=7818.14;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.6239;MQMR=59.9639;NS=94;NUMALT=1;ODDS=1.09049;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=283041;QR=128768;RO=3599;RPL=0;RPP=17244.5;RPPR=7818.14;RPR=7940;RUN=1;SAF=7940;SAP=17244.5;SAR=0;SRF=3599;SRP=7818.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:13,19:13:460:19:680:-51.8798,0,-32.1024	0/1:155:91,64:91:3256:64:2228:-154.107,0,-246.601	0/1:138:74,64:74:2656:64:2262:-162.273,0,-197.744	0/1:319:165,154:165:5896:154:5512:-400.171,0,-434.096	1/1:39:0,39:0:0:39:1370:-123.586,-11.7402,0	1/1:66:0,66:0:0:66:2334:-210.119,-19.868,0	0/1:184:59,125:59:2100:125:4461:-346.258,0,-133.88	0/1:229:100,129:100:3580:129:4625:-347.418,0,-253.471	1/1:166:0,166:0:0:166:5907:-531.571,-49.971,0	0/1:163:71,92:71:2556:92:3206:-239.685,0,-181.222	1/1:87:0,87:0:0:87:3123:-281.246,-26.1896,0	0/1:74:43,31:43:1527:31:1112:-78.085,0,-115.446	0/1:71:38,33:38:1364:33:1149:-82.197,0,-101.688	0/1:121:61,60:61:2192:60:2156:-157.873,0,-161.121	1/1:64:0,64:0:0:64:2288:-206.182,-19.2659,0	0/1:69:37,32:37:1328:32:1152:-83.2145,0,-99.0512	0/1:96:46,50:46:1640:50:1800:-133.353,0,-118.99	0/1:50:31,19:31:1099:19:684:-46.8306,0,-84.1564	1/1:40:0,40:0:0:40:1436:-129.33,-12.0412,0	0/1:273:156,117:156:5588:117:4173:-293.551,0,-420.859	1/1:169:0,169:0:0:169:6011:-541.07,-50.8741,0	0/1:173:122,51:122:4380:51:1831:-112.917,0,-342.294	0/1:169:75,94:75:2696:94:3365:-252.153,0,-192.01	0/1:95:58,37:58:2084:37:1298:-88.5099,0,-159.232	0/1:53:34,19:34:1220:19:669:-44.5747,0,-94.1522	1/1:465:1,464:1:36:464:16513:-1481.58,-136.381,0	1/1:267:0,267:0:0:267:9512:-855.966,-80.375,0	1/1:28:0,28:0:0:28:989:-89.3173,-8.42884,0	0/1:361:172,185:172:6132:185:6594:-485.704,0,-444.156	0/1:242:129,112:129:4624:112:4013:-288.357,0,-343.415	1/1:243:0,243:0:0:243:8590:-773.032,-73.1503,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:19:0,19:0:0:19:669:-60.533,-5.71957,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/1:202:98,104:98:3502:104:3736:-275.599,0,-254.311	0/1:189:142,47:142:5064:47:1680:-94.5599,0,-399.013	0/1:94:45,49:45:1612:49:1756:-130.011,0,-117.073	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:202:112,90:112:4008:90:3224:-228.181,0,-300.101	0/1:52:30,22:30:1071:22:792:-55.9521,0,-81.0481	0/1:146:68,78:68:2432:78:2766:-205.056,0,-175.185	0/1:96:42,54:42:1491:54:1936:-145.608,0,-105.585	0/1:56:29,27:29:1040:27:968:-70.5797,0,-77.0567	1/1:178:1,177:1:36:177:6289:-561.561,-49.9851,0	1/1:143:0,143:0:0:143:5101:-459.168,-43.0473,0	1/1:198:0,198:0:0:198:7112:-639.307,-59.6039,0	0/1:150:60,90:60:2156:90:3167:-240.091,0,-149.148	0/1:147:75,72:75:2688:72:2558:-186.202,0,-197.286	0/1:212:98,114:98:3516:114:4076:-303.205,0,-252.745	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:159:0,159:0:0:159:5678:-511.01,-47.8638,0	1/1:88:0,88:0:0:88:3156:-284.203,-26.4906,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:150:77,73:77:2764:73:2607:-189.642,0,-203.847	0/1:65:30,35:30:1072:35:1256:-93.7634,0,-77.2255	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:10:0,10:0:0:10:356:-32.3803,-3.0103,0	1/1:143:0,143:0:0:143:5072:-456.58,-43.0473,0	1/1:122:0,122:0:0:122:4357:-392.266,-36.7257,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:236:135,101:135:4816:101:3579:-251.262,0,-362.554	1/1:286:1,285:1:36:285:10163:-910.76,-82.4963,0	0/1:102:55,47:55:1964:47:1673:-119.951,0,-146.33	1/1:84:0,84:0:0:84:3000:-270.225,-25.2865,0	0/1:269:137,131:137:4887:131:4693:-341.483,0,-358.948	0/1:195:115,80:115:4120:80:2846:-197.623,0,-312.283	0/1:32:11,21:11:388:21:756:-58.7343,0,-25.6244	1/1:98:0,98:0:0:98:3486:-313.911,-29.5009,0	0/1:95:52,43:52:1868:43:1525:-108.912,0,-139.801	1/1:36:0,36:0:0:36:1262:-113.876,-10.8371,0	0/1:193:79,114:79:2816:114:4076:-308.663,0,-195.581	0/1:75:33,42:33:1188:42:1512:-113.797,0,-84.6513	1/1:252:0,252:0:0:252:9011:-810.57,-75.8596,0	0/1:228:115,113:115:4108:113:4032:-294.397,0,-301.271	0/1:144:90,54:90:3212:54:1917:-129.436,0,-245.955	1/1:96:0,96:0:0:96:3394:-305.643,-28.8989,0	1/1:6:0,6:0:0:6:216:-19.7822,-1.80618,0	1/1:104:1,103:1:36:103:3662:-326.17,-27.7088,0	1/1:145:0,145:0:0:145:5171:-465.255,-43.6494,0	1/1:218:0,218:0:0:218:7772:-699.395,-65.6245,0	0/1:95:61,34:61:2184:34:1224:-81.8668,0,-168.228	0/1:71:45,26:45:1607:26:928:-62.4651,0,-123.546	1/1:85:0,85:0:0:85:3044:-274.174,-25.5876,0	0/1:138:62,76:62:2220:76:2720:-203.49,0,-158.522	1/1:51:0,51:0:0:51:1828:-164.76,-15.3525,0	1/1:81:0,81:0:0:81:2904:-261.396,-24.3834,0	1/1:71:0,71:0:0:71:2552:-229.856,-21.3731,0	0/1:52:25,27:25:900:27:972:-72.1443,0,-65.6675	0/1:116:44,72:44:1580:72:2571:-196.704,0,-107.572	0/1:71:45,26:45:1612:26:932:-62.8202,0,-123.997	1/1:126:0,126:0:0:126:4472:-402.605,-37.9298,0	1/1:112:0,112:0:0:112:3997:-359.91,-33.7154,0
chr07	1468845	.	A	G	159518	PASS	AB=0.4816;ABP=23.2276;AC=135;AF=0.718085;AN=188;AO=7817;CIGAR=1X;DP=11390;DPB=11390;DPRA=0;EPP=16960;EPPR=7655.52;GTI=2;LEN=1;MEANALT=1.07447;MQM=59.6476;MQMR=59.9585;NS=94;NUMALT=1;ODDS=1.00631;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279494;QR=127060;RO=3564;RPL=0;RPP=16977.4;RPPR=7655.52;RPR=7817;RUN=1;SAF=7815;SAP=16960;SAR=2;SRF=3564;SRP=7742.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:13,19:13:452:19:684:-52.241,0,-31.3781	0/1:154:89,65:89:3169:65:2316:-162.331,0,-239.075	0/1:133:72,61:72:2565:61:2192:-157.492,0,-191.062	0/1:313:165,148:165:5843:148:5289:-381.915,0,-431.136	1/1:38:0,38:0:0:38:1364:-123.053,-11.4391,0	1/1:63:0,63:0:0:63:2235:-201.351,-18.9649,0	0/1:182:60,121:60:2152:121:4330:-335.017,0,-139.101	0/1:230:105,125:105:3745:125:4481:-334.192,0,-267.385	1/1:161:0,161:0:0:161:5740:-516.559,-48.4658,0	0/1:161:70,91:70:2467:91:3268:-245.866,0,-173.814	1/1:83:0,83:0:0:83:2961:-266.688,-24.9855,0	0/1:73:42,31:42:1504:31:1112:-78.3861,0,-113.679	0/1:69:38,31:38:1364:31:1111:-79.5208,0,-102.29	0/1:119:60,59:60:2156:59:2115:-154.786,0,-158.484	1/1:62:0,62:0:0:62:2224:-200.407,-18.6639,0	0/1:69:39,30:39:1377:30:1076:-76.3772,0,-103.456	0/1:91:44,47:44:1580:47:1684:-124.437,0,-115.098	0/1:50:31,19:31:1097:19:684:-46.8306,0,-83.9581	1/1:41:0,41:0:0:41:1467:-132.118,-12.3422,0	0/1:265:151,114:151:5373:114:4038:-283.816,0,-403.929	1/1:166:0,166:0:0:166:5935:-534.222,-49.971,0	0/1:168:119,49:119:4276:49:1760:-108.033,0,-334.443	0/1:170:77,93:77:2741:93:3332:-248.887,0,-195.756	0/1:92:57,35:57:2032:35:1244:-84.5588,0,-155.458	0/1:55:36,19:36:1288:19:684:-45.3291,0,-99.6669	1/1:453:2,451:2:72:451:16153:-1446,-129.53,0	1/1:266:0,266:0:0:266:9534:-857.938,-80.074,0	1/1:27:0,27:0:0:27:961:-86.8003,-8.12781,0	0/1:357:173,184:173:6124:184:6583:-485.074,0,-443.794	0/1:235:124,109:124:4418:109:3893:-279.984,0,-327.291	1/1:238:0,238:0:0:238:8443:-759.832,-71.6451,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:19:0,19:0:0:19:680:-61.5288,-5.71957,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/1:198:96,102:96:3452:102:3652:-269.248,0,-250.797	0/1:186:140,46:140:4985:46:1648:-92.5844,0,-392.808	0/1:94:45,49:45:1616:49:1760:-130.371,0,-117.433	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:201:112,89:112:3985:89:3187:-226.515,0,-298.334	0/1:51:30,21:30:1076:21:748:-52.2928,0,-81.8003	0/1:143:66,76:66:2364:76:2707:-199.793,0,-169.912	0/1:94:41,53:41:1468:53:1900:-142.974,0,-104.119	0/1:54:27,27:27:972:27:964:-70.8212,0,-71.5423	1/1:178:1,177:1:36:177:6300:-563.155,-49.9851,0	1/1:145:0,145:0:0:145:5195:-467.634,-43.6494,0	1/1:195:0,195:0:0:195:6987:-628.468,-58.7009,0	0/1:151:58,93:58:2076:93:3336:-254.989,0,-141.655	0/1:142:71,70:71:2552:70:2509:-183.246,0,-187.125	0/1:210:96,114:96:3406:114:4100:-305.965,0,-243.5	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:158:0,158:0:0:158:5649:-508.403,-47.5627,0	1/1:90:0,90:0:0:90:3205:-288.611,-27.0927,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:149:76,73:76:2701:73:2600:-189.192,0,-198.48	0/1:61:27,34:27:953:34:1203:-90.1961,0,-67.7205	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:10:0,10:0:0:10:352:-32.0178,-3.0103,0	1/1:137:0,137:0:0:137:4920:-442.91,-41.2411,0	1/1:122:0,122:0:0:122:4362:-392.718,-36.7257,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:239:137,102:137:4904:102:3645:-256.297,0,-369.565	1/1:283:2,280:2:72:280:10015:-894.251,-78.3137,0	0/1:104:56,48:56:2008:48:1728:-124.299,0,-149.686	1/1:83:0,83:0:0:83:2965:-267.076,-24.9855,0	0/1:262:132,130:132:4679:130:4634:-338.343,0,-342.344	0/1:189:113,76:113:4014:76:2732:-189.225,0,-304.554	0/1:30:9,21:9:320:21:748:-58.6144,0,-20.1115	1/1:95:0,95:0:0:95:3366:-303.13,-28.5979,0	0/1:92:51,41:51:1804:41:1464:-104.353,0,-134.947	1/1:35:0,34:0:0:34:1224:-110.105,-10.235,0	0/1:193:80,111:80:2838:111:3954:-297.935,0,-197.8	0/1:74:33,41:33:1188:41:1468:-110.14,0,-84.9524	1/1:249:0,249:0:0:249:8861:-797.186,-74.9565,0	0/1:227:113,114:113:4060:114:4067:-297.854,0,-297.252	0/1:142:90,52:90:3175:52:1872:-125.999,0,-243.226	1/1:94:0,94:0:0:94:3376:-304.012,-28.2968,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:104:1,103:1:36:103:3677:-327.52,-27.7088,0	1/1:144:0,144:0:0:144:5156:-464.069,-43.3483,0	1/1:217:0,217:0:0:217:7734:-695.994,-65.3235,0	0/1:95:61,34:61:2188:34:1220:-81.5066,0,-168.588	0/1:71:45,26:45:1604:26:936:-63.1863,0,-123.277	1/1:86:0,86:0:0:86:3092:-278.491,-25.8886,0	0/1:138:62,76:62:2224:76:2732:-204.568,0,-158.882	1/1:54:0,54:0:0:54:1915:-172.591,-16.2556,0	1/1:80:0,80:0:0:80:2844:-255.998,-24.0824,0	1/1:70:0,70:0:0:70:2508:-225.898,-21.0721,0	0/1:51:24,27:24:864:27:968:-72.0848,0,-62.73	0/1:115:45,70:45:1612:70:2516:-192.056,0,-110.752	0/1:70:45,25:45:1601:25:900:-60.2466,0,-123.306	1/1:126:0,126:0:0:126:4520:-406.924,-37.9298,0	1/1:109:1,108:1:36:108:3868:-344.707,-29.214,0
chr07	1472191	.	T	A	17939.7	PASS	AB=0.34757;ABP=551.142;AC=48;AF=0.258065;AN=186;AO=967;CIGAR=1X;DP=6237;DPB=6237;DPRA=0.870961;EPP=25.9174;EPPR=11422.8;GTI=5;LEN=1;MEANALT=1.03636;MQM=52.1386;MQMR=59.9913;NS=93;NUMALT=1;ODDS=1.29627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34502;QR=188324;RO=5263;RPL=967;RPP=2102.82;RPPR=11422.8;RPR=0;RUN=1;SAF=534;SAP=25.9174;SAR=433;SRF=5263;SRP=11431.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:11,4:11:396:4:144:-8.77199,0,-31.4673	0/1:69:55,14:55:1972:14:496:-24.0295,0,-156.984	0/1:65:49,16:49:1732:16:572:-32.0023,0,-136.595	0/1:81:64,17:64:2283:17:608:-30.1157,0,-181.348	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.135	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/1:54:44,10:44:1580:10:356:-16.0025,0,-126.236	0/1:80:68,12:68:2440:12:428:-14.7042,0,-195.773	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:46:40,6:40:1436:6:216:-5.88866,0,-115.69	0/0:41:40,0:40:1431:0:0:0,-12.0412,-128.766	0/1:79:22,57:22:775:57:2036:-159.019,0,-46.2898	0/1:79:23,56:23:828:56:1990:-154.534,0,-51.0627	0/1:62:31,31:31:1116:31:1112:-81.2811,0,-82.0878	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:66:24,42:24:860:42:1491:-113.822,0,-57.8539	0/1:51:31,20:31:1112:20:716:-49.292,0,-85.0388	0/1:49:22,27:22:773:27:972:-72.8457,0,-55.139	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:64:53,11:53:1877:11:396:-16.5633,0,-149.941	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/1:47:38,9:38:1356:9:324:-15.3156,0,-108.192	0/1:68:52,16:52:1830:16:572:-30.6488,0,-144.507	0/1:60:52,8:52:1864:8:288:-8.16836,0,-149.978	0/1:23:12,11:12:424:11:392:-28.635,0,-31.5727	0/0:295:295,0:295:10540:0:0:0,-88.8038,-948.515	0/0:156:156,0:156:5577:0:0:0,-46.9607,-502.052	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.1369	0/1:108:93,15:93:3340:15:540:-16.0653,0,-268.305	0/0:117:112,5:112:4007:5:180:0,-18.6919,-344.29	0/0:158:158,0:158:5672:0:0:0,-47.5627,-510.597	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:3,2:3:108:2:72:-5.31813,0,-8.57002	0/1:157:95,62:95:3402:62:2223:-152.08,0,-259.131	0/0:100:96,4:96:3431:4:144:0,-16.8083,-295.709	0/1:33:12,21:12:428:21:748:-56.9416,0,-28.9248	.:.:.:.:.:.:.:.	0/1:92:78,14:78:2781:14:504:-17.6309,0,-222.835	0/1:35:18,14:18:648:14:496:-34.7518,0,-48.6591	0/1:79:64,15:64:2289:15:540:-25.0858,0,-182.488	0/1:50:23,27:23:820:27:968:-71.5079,0,-59.071	0/1:61:22,39:22:792:39:1373:-103.61,0,-53.2428	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.797	0/0:164:163,1:163:5822:1:23:0,-47.3689,-522.091	0/1:23:17,6:17:612:6:216:-11.875,0,-48.4897	0/1:65:50,15:50:1792:15:540:-29.1435,0,-141.996	0/1:71:59,12:59:2124:12:432:-17.6145,0,-170.055	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:119:119,0:119:4260:0:0:0,-35.8226,-383.579	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.458	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:53:42,11:42:1493:11:384:-18.7713,0,-118.708	0/1:24:17,7:17:612:7:252:-15.7189,0,-48.1887	0/1:9:8,1:8:288:1:36:-0.883903,0,-23.5581	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:94:94,0:94:3353:0:0:0,-28.2968,-301.986	0/0:120:118,2:118:4221:2:72:0,-29.2999,-373.245	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	0/0:74:72,2:72:2580:2:59:0,-16.6879,-226.861	0/0:205:204,0:204:7324:0:0:0,-61.4101,-658.829	0/0:44:41,3:41:1468:3:104:0,-3.55395,-122.725	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/1:82:64,18:64:2296:18:640:-32.6156,0,-182.217	0/1:48:35,13:35:1247:13:464:-27.4852,0,-98.0846	0/1:14:4,10:4:144:10:360:-28.4835,0,-9.0992	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:76:56,20:56:2008:20:712:-41.3983,0,-158.115	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:51:48,3:48:1711:3:104:0,-5.67,-144.592	0/1:27:16,11:16:576:11:392:-27.2776,0,-44.0472	0/0:132:132,0:132:4716:0:0:0,-39.736,-424.598	0/1:71:57,14:57:2048:14:496:-23.3371,0,-163.218	0/1:45:35,10:35:1256:10:357:-18.4334,0,-99.7989	0/0:119:119,0:119:4255:0:0:0,-35.8226,-383.129	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/0:92:92,0:92:3287:0:0:0,-27.6948,-296.049	0/0:172:171,0:171:6122:0:0:0,-51.4761,-550.719	0/1:94:62,31:62:2201:31:1105:-71.0434,0,-169.999	0/1:75:32,43:32:1152:43:1544:-116.442,0,-81.4129	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/1:112:63,49:63:2256:49:1752:-123.723,0,-169.588	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:34:6,28:6:216:28:1004:-79.9629,0,-9.55549	0/1:58:31,27:31:1104:27:960:-68.9871,0,-82.2109	0/1:57:15,42:15:536:42:1489:-116.573,0,-31.4161	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:91:89,2:89:3192:2:72:0,-20.5667,-280.676
chr07	1472309	.	G	A	89793	PASS	AB=0.363636;ABP=793.624;AC=131;AF=0.704301;AN=186;AO=4575;CIGAR=1X;DP=7713;DPB=7713;DPRA=10.5728;EPP=9928.81;EPPR=6814.92;GTI=10;LEN=1;MEANALT=1.01099;MQM=59.9784;MQMR=60;NS=93;NUMALT=1;ODDS=0.948438;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163361;QR=111114;RO=3137;RPL=1;RPP=9928.81;RPPR=6814.92;RPR=4574;RUN=1;SAF=0;SAP=9937.5;SAR=4575;SRF=0;SRP=6814.92;SRR=3137;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:23,28:23:815:28:1004:-75.3233,0,-58.3182	0/1:55:30,25:30:1067:25:888:-63.6824,0,-79.7846	0/1:79:25,54:25:881:54:1925:-149.744,0,-55.8245	0/1:228:156,72:156:5569:72:2575:-163.365,0,-432.699	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	0/1:114:92,22:92:3255:22:784:-36.5665,0,-258.853	0/1:107:63,44:63:2210:44:1560:-108.48,0,-166.952	1/1:84:0,84:0:0:84:2970:-267.531,-25.2865,0	0/1:97:64,33:64:2288:33:1184:-77.6684,0,-176.982	1/1:26:0,26:0:0:26:908:-82.034,-7.82678,0	0/1:102:55,47:55:1946:47:1680:-120.782,0,-144.71	0/1:70:43,27:43:1527:27:954:-65.1019,0,-116.65	0/1:104:82,22:82:2870:22:792:-40.2986,0,-227.23	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:56:36,20:36:1257:20:707:-47.0969,0,-96.5723	0/1:61:52,9:52:1855:9:324:-11.143,0,-148.866	0/1:39:31,8:31:1088:8:288:-14.5272,0,-86.4863	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:208:157,51:157:5542:51:1818:-101.286,0,-436.294	1/1:145:0,145:0:0:145:5175:-465.891,-43.6494,0	0/1:113:96,17:96:3439:17:608:-21.0356,0,-275.706	0/1:74:29,45:29:1036:45:1602:-122.188,0,-71.2777	0/1:74:45,29:45:1585:29:1036:-71.2777,0,-120.662	0/1:38:19,19:19:672:19:669:-49.0948,0,-49.3677	1/1:231:1,230:1:36:230:8231:-737.201,-65.9397,0	1/1:139:0,139:0:0:139:4970:-447.443,-41.8432,0	1/1:24:0,24:0:0:24:847:-76.5487,-7.22472,0	0/1:279:212,67:212:7548:67:2403:-132.538,0,-595.376	0/1:71:42,29:42:1492:29:1044:-72.9017,0,-113.201	1/1:111:0,111:0:0:111:3953:-355.962,-33.4143,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:215:137,78:137:4847:78:2792:-186.791,0,-371.663	0/1:165:110,54:110:3900:54:1944:-125.507,0,-301.466	0/1:63:46,17:46:1625:17:608:-36.0871,0,-127.572	0/1:6:4,2:4:136:2:72:-5.03054,0,-10.7694	0/1:95:67,28:67:2388:28:1004:-62.078,0,-186.58	0/1:36:26,10:26:936:10:356:-21.5442,0,-73.7224	0/1:125:51,74:51:1801:74:2652:-201.297,0,-124.741	0/1:55:41,14:41:1453:14:500:-28.7795,0,-114.507	0/1:54:34,20:34:1205:20:720:-48.8732,0,-92.4983	1/1:117:0,117:0:0:117:4190:-377.28,-35.2205,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:110:0,110:0:0:110:3930:-353.892,-33.1133,0	0/1:80:50,30:50:1747:30:1072:-72.7101,0,-133.428	0/1:128:85,43:85:3044:43:1544:-100.721,0,-235.658	0/1:104:78,26:78:2763:26:928:-52.5311,0,-217.603	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:153:78,75:78:2776:75:2687:-196.017,0,-204.022	0/1:43:32,11:32:1130:11:396:-23.0385,0,-89.0626	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:99:0,99:0:0:99:3524:-317.369,-29.802,0	1/1:78:3,75:3:93:75:2621:-227.087,-14.8036,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:169:103,66:103:3661:66:2368:-162.504,0,-278.82	1/1:158:0,158:0:0:158:5664:-509.879,-47.5627,0	0/1:81:55,26:55:1905:26:936:-60.176,0,-147.34	1/1:72:0,72:0:0:72:2577:-232.179,-21.6742,0	0/1:123:34,89:34:1198:89:3183:-249.667,0,-71.0973	0/1:62:25,37:25:896:37:1323:-100.707,0,-62.2965	0/1:26:19,7:19:649:7:252:-15.2022,0,-50.9011	1/1:60:0,60:0:0:60:2114:-190.526,-18.0618,0	0/1:78:51,27:51:1797:27:968:-63.957,0,-138.53	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:146:76,70:76:2714:70:2493:-180.672,0,-200.552	0/1:53:27,26:27:968:26:917:-66.89,0,-71.4828	1/1:192:0,192:0:0:192:6857:-617.2,-57.7978,0	0/1:147:88,59:88:3131:59:2120:-146.817,0,-237.765	0/1:114:52,62:52:1850:62:2207:-164.577,0,-132.461	1/1:82:1,81:1:36:81:2912:-258.716,-21.0862,0	1/1:7:0,7:0:0:7:243:-22.2081,-2.10721,0	1/1:70:0,70:0:0:70:2499:-225.162,-21.0721,0	1/1:94:0,94:0:0:94:3328:-299.735,-28.2968,0	1/1:170:2,168:2:72:168:6015:-534.617,-44.3384,0	0/1:95:70,25:70:2463:25:876:-50.5573,0,-193.322	0/1:76:49,27:49:1709:27:955:-63.3866,0,-131.212	1/1:27:0,27:0:0:27:945:-85.362,-8.12781,0	0/1:160:103,57:103:3616:57:2042:-135.887,0,-277.482	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	0/1:51:44,7:44:1562:7:243:-6.85495,0,-125.518	0/1:103:74,29:74:2626:29:1040:-62.9083,0,-205.581	0/1:62:48,14:48:1683:14:504:-27.0342,0,-133.089	1/1:112:0,112:0:0:112:4024:-362.347,-33.7154,0	1/1:67:0,67:0:0:67:2374:-213.915,-20.169,0
chr07	1472336	.	C	G	91359.3	PASS	AB=0.364002;ABP=802.728;AC=131;AF=0.704301;AN=186;AO=4646;CIGAR=1X;DP=7834;DPB=7834;DPRA=10.739;EPP=10091.7;EPPR=6919.15;GTI=11;LEN=1;MEANALT=1.03297;MQM=59.9692;MQMR=59.9871;NS=93;NUMALT=1;ODDS=1.54059;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166112;QR=113650;RO=3185;RPL=4646;RPP=10091.7;RPPR=6919.15;RPR=0;RUN=1;SAF=0;SAP=10091.7;SAR=4646;SRF=0;SRP=6919.15;SRR=3185;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:22,30:22:792:30:1072:-81.1383,0,-55.9521	0/1:55:30,25:30:1068:25:892:-64.043,0,-79.8754	0/1:80:27,53:27:949:53:1900:-147.187,0,-61.6404	0/1:230:157,73:157:5599:73:2612:-166.091,0,-434.792	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:116:93,23:93:3324:23:824:-39.5638,0,-264.459	0/1:108:62,46:62:2205:46:1648:-116.097,0,-166.202	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	0/1:100:66,34:66:2368:34:1220:-80.0038,0,-183.275	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:106:57,49:57:2040:49:1748:-125.695,0,-151.963	0/1:71:44,27:44:1584:27:961:-65.4321,0,-121.478	0/1:106:84,22:84:2988:22:792:-39.6965,0,-237.244	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:56:36,20:36:1292:20:716:-47.91,0,-99.7261	0/1:61:52,9:52:1855:9:324:-11.143,0,-148.866	0/1:37:29,8:29:1044:8:288:-15.1293,0,-83.1367	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:216:161,55:161:5722:55:1972:-112.732,0,-450.076	1/1:149:0,148:0:0:148:5304:-477.239,-44.5524,0	0/1:115:98,16:98:3497:16:561:-16.1404,0,-280.263	0/1:72:29,43:29:1021:43:1544:-117.551,0,-70.5261	0/1:75:46,29:46:1629:29:1036:-70.9767,0,-124.32	0/1:40:19,21:19:680:21:756:-56.326,0,-49.488	1/1:235:1,234:1:36:234:8350:-747.908,-67.1438,0	1/1:142:0,142:0:0:142:5053:-454.914,-42.7463,0	1/1:24:0,24:0:0:24:838:-75.7363,-7.22472,0	0/1:285:217,68:217:7777:68:2440:-134.061,0,-614.164	0/1:74:44,30:44:1561:30:1070:-74.3362,0,-118.503	1/1:113:0,113:0:0:113:4048:-364.507,-34.0164,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:218:139,79:139:4987:79:2836:-189.845,0,-383.351	0/1:167:112,55:112:4005:55:1968:-127.123,0,-310.366	0/1:67:49,18:49:1740:18:644:-38.1216,0,-136.713	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:95:67,28:67:2385:28:1004:-62.078,0,-186.308	0/1:36:26,10:26:936:10:356:-21.5442,0,-73.7224	0/1:129:55,74:55:1968:74:2652:-200.093,0,-138.562	0/1:55:41,14:41:1456:14:504:-29.1414,0,-114.779	0/1:56:36,20:36:1288:20:712:-47.549,0,-99.3659	1/1:116:0,116:0:0:116:4148:-373.503,-34.9195,0	1/1:65:0,65:0:0:65:2329:-209.869,-19.567,0	1/1:109:0,109:0:0:109:3868:-348.314,-32.8123,0	0/1:84:52,32:52:1826:32:1148:-78.3433,0,-139.33	0/1:129:86,43:86:3069:43:1536:-99.7002,0,-237.594	0/1:104:77,27:77:2764:27:960:-55.404,0,-217.694	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:84:0,84:0:0:84:3011:-271.221,-25.2865,0	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:154:79,75:79:2806:75:2669:-194.096,0,-206.419	0/1:44:33,11:33:1180:11:396:-22.7374,0,-93.2627	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	1/1:79:3,76:3:108:76:2726:-234.651,-13.7062,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:174:104,69:104:3709:69:2472:-170.296,0,-281.503	1/1:159:0,159:0:0:159:5699:-513.026,-47.8638,0	0/1:85:58,27:58:2061:27:968:-61.8498,0,-160.172	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	0/1:126:35,91:35:1252:91:3249:-254.7,0,-75.0553	0/1:64:26,38:26:936:38:1364:-103.795,0,-65.2935	0/1:26:19,7:19:684:7:252:-15.2022,0,-54.0635	1/1:64:0,64:0:0:64:2273:-204.83,-19.2659,0	0/1:82:52,30:52:1849:30:1063:-71.2957,0,-142.004	1/1:17:0,17:0:0:17:603:-54.5995,-5.11751,0	0/1:149:79,70:79:2782:70:2489:-179.385,0,-205.764	0/1:53:27,26:27:968:26:924:-67.5231,0,-71.4828	1/1:198:0,198:0:0:198:7074:-636.715,-59.6039,0	0/1:149:90,59:90:3209:59:2109:-145.224,0,-244.178	0/1:115:53,62:53:1908:62:2201:-163.735,0,-137.379	1/1:86:1,85:1:36:85:3039:-270.141,-22.2903,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	1/1:94:0,94:0:0:94:3343:-301.087,-28.2968,0	1/1:172:0,172:0:0:172:6161:-554.586,-51.7772,0	0/1:94:69,25:69:2471:25:900:-53.0242,0,-194.346	0/1:76:49,27:49:1756:27:968:-64.5591,0,-135.446	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:161:103,58:103:3662:58:2084:-139.364,0,-281.316	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0	1/1:62:0,62:0:0:62:2214:-199.523,-18.6639,0	0/1:51:44,7:44:1580:7:248:-7.31166,0,-127.139	0/1:106:75,31:75:2658:31:1112:-68.4822,0,-207.554	0/1:61:47,14:47:1684:14:504:-27.3353,0,-133.484	1/1:112:0,112:0:0:112:4008:-360.909,-33.7154,0	1/1:68:0,68:0:0:68:2431:-219.043,-20.47,0
chr07	1611203	.	G	A	83483.4	PASS	AB=0.443332;ABP=117.204;AC=133;AF=0.707447;AN=188;AO=4142;CIGAR=1X;DP=6433;DPB=6433;DPRA=11.5179;EPP=8824.37;EPPR=4733.28;GTI=4;LEN=1;MEANALT=1.02151;MQM=59.9628;MQMR=59.9904;NS=94;NUMALT=1;ODDS=0.0421287;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147867;QR=81825;RO=2289;RPL=4122;RPP=8824.37;RPPR=4733.28;RPR=20;RUN=1;SAF=0;SAP=8997.25;SAR=4142;SRF=0;SRP=4973.51;SRR=2289;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:41,17:41:1472:17:612:-37.9503,0,-115.316	0/1:36:25,11:25:868:11:396:-25.1457,0,-67.5959	0/1:82:38,44:38:1364:44:1584:-118.167,0,-98.3763	0/1:187:112,75:112:3998:75:2681:-185.241,0,-303.717	1/1:49:0,49:0:0:49:1749:-157.694,-14.7505,0	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:119:73,46:73:2616:46:1644:-112.426,0,-199.865	0/1:109:58,51:58:2072:51:1815:-130.817,0,-153.938	1/1:63:0,63:0:0:63:2236:-201.504,-18.9649,0	0/1:69:42,27:42:1495:27:957:-65.6728,0,-114.073	1/1:55:0,55:0:0:55:1966:-176.588,-16.5567,0	0/1:78:38,40:38:1359:40:1432:-105.697,0,-99.1295	0/1:81:38,43:38:1345:43:1540:-114.51,0,-96.9647	0/1:72:44,28:44:1584:28:1000:-68.6412,0,-121.177	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:69:48,21:48:1720:21:744:-46.5133,0,-134.314	0/1:22:14,8:14:500:8:273:-18.2775,0,-38.7135	0/1:32:20,12:20:716:12:420:-28.5005,0,-55.1348	1/1:32:0,31:0:0:31:1104:-99.3076,-9.33193,0	0/1:115:59,56:59:2120:56:2016:-147.094,0,-156.45	1/1:129:0,129:0:0:129:4588:-413.081,-38.8329,0	0/1:75:48,27:48:1724:27:972:-65.2207,0,-132.868	0/1:78:49,29:49:1760:29:1032:-69.7131,0,-135.204	0/1:40:23,17:23:824:17:612:-43.3722,0,-62.4421	0/1:77:45,32:45:1608:32:1152:-80.8108,0,-121.831	1/1:138:0,138:0:0:138:4907:-441.779,-41.5421,0	1/1:120:0,120:0:0:120:4301:-387.26,-36.1236,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:243:114,129:114:4076:129:4561:-337.502,0,-293.877	0/1:49:29,20:29:1028:20:720:-50.3783,0,-78.0826	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:24:17,7:17:608:7:252:-15.8042,0,-47.8273	0/1:142:85,57:85:3039:57:2008:-138.245,0,-230.993	0/1:44:29,15:29:1027:15:536:-35.3295,0,-79.4969	0/1:67:34,33:34:1224:33:1188:-87.0596,0,-90.298	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:146:79,67:79:2844:67:2398:-172.126,0,-212.247	0/1:39:29,10:29:1036:10:349:-20.0046,0,-81.8137	0/1:105:60,45:60:2140:45:1616:-114.121,0,-161.223	0/1:47:24,23:24:860:23:819:-59.8832,0,-63.5734	0/1:34:21,13:21:752:13:468:-32.2246,0,-57.7712	1/1:75:0,75:0:0:75:2647:-238.473,-22.5773,0	1/1:70:0,70:0:0:70:2489:-224.262,-21.0721,0	1/1:178:1,177:1:36:177:6348:-567.81,-49.9851,0	0/1:70:36,34:36:1288:34:1220:-89.0347,0,-95.1515	0/1:137:70,67:70:2480:67:2404:-175.375,0,-182.211	0/1:123:67,56:67:2399:56:2012:-144.324,0,-179.139	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:66:0,66:0:0:66:2357:-212.387,-19.868,0	1/1:44:0,44:0:0:44:1539:-138.794,-13.2453,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:82:34,48:34:1220:48:1720:-130.38,0,-85.4223	0/1:30:19,11:19:684:11:396:-26.9518,0,-52.8594	0/1:10:5,5:5:171:5:180:-13.5418,0,-12.7152	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:87:0,87:0:0:87:3117:-280.755,-26.1896,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:126:59,67:59:2108:67:2408:-179.046,0,-152.059	1/1:88:0,88:0:0:88:3141:-282.915,-26.4906,0	0/1:84:39,45:39:1391:45:1605:-119.452,0,-100.202	1/1:42:0,42:0:0:42:1489:-134.303,-12.6433,0	0/1:72:25,47:25:888:47:1684:-130.173,0,-58.5649	0/1:112:78,34:78:2795:34:1205:-75.0385,0,-218.074	0/1:56:35,21:35:1256:21:756:-51.5095,0,-96.4876	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:32:18,14:18:648:14:500:-35.7032,0,-49.0189	1/1:17:0,17:0:0:17:597:-54.0561,-5.11751,0	0/1:91:53,38:53:1896:38:1334:-92.9621,0,-143.524	0/1:75:43,32:43:1548:32:1146:-80.8426,0,-117.036	1/1:66:0,66:0:0:66:2334:-210.317,-19.868,0	0/1:137:63,73:63:2244:73:2616:-194.388,0,-160.924	0/1:104:54,50:54:1931:50:1777:-128.86,0,-142.759	1/1:101:1,100:1:32:100:3573:-318.578,-27.2047,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:96:0,96:0:0:96:3429:-308.819,-28.8989,0	1/1:78:1,77:1:36:77:2751:-244.227,-19.8821,0	1/1:114:0,114:0:0:114:4069:-366.397,-34.3174,0	0/1:38:23,15:23:813:15:540:-37.4974,0,-62.05	0/1:56:32,24:32:1144:24:855:-60.4125,0,-86.4118	1/1:23:0,23:0:0:23:815:-73.6714,-6.92369,0	0/1:96:55,41:55:1976:41:1465:-103.246,0,-149.216	1/1:26:1,25:1:36:25:900:-77.7227,-4.22851,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:47:0,47:0:0:47:1677:-151.216,-14.1484,0	0/1:56:30,26:30:1067:26:936:-67.7018,0,-79.4835	0/1:87:49,38:49:1739:38:1351:-95.7,0,-130.604	0/1:67:48,19:48:1716:19:684:-41.7213,0,-134.557	1/1:95:0,95:0:0:95:3387:-305.043,-28.5979,0	1/1:75:1,74:1:36:74:2656:-235.687,-18.979,0
chr07	1611218	.	T	C	82501.5	PASS	AB=0.449851;ABP=90.9991;AC=133;AF=0.707447;AN=188;AO=4138;CIGAR=1X;DP=6365;DPB=6365;DPRA=13.6774;EPP=8988.56;EPPR=4832.36;GTI=3;LEN=1;MEANALT=1.03226;MQM=59.9577;MQMR=59.9865;NS=94;NUMALT=1;ODDS=0.367079;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147625;QR=78758;RO=2224;RPL=4138;RPP=8988.56;RPPR=4832.36;RPR=0;RUN=1;SAF=0;SAP=8988.56;SAR=4138;SRF=0;SRP=4832.36;SRR=2224;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:41,17:41:1452:17:608:-37.5909,0,-113.516	0/1:34:23,11:23:809:11:396:-25.7477,0,-62.8933	0/1:79:35,44:35:1237:44:1572:-117.99,0,-87.8509	0/1:186:110,76:110:3944:76:2696:-186.894,0,-299.16	1/1:49:0,49:0:0:49:1748:-157.603,-14.7505,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:116:69,47:69:2461:47:1660:-114.764,0,-186.823	0/1:111:59,52:59:2120:52:1842:-132.633,0,-157.654	1/1:63:0,63:0:0:63:2240:-201.864,-18.9649,0	0/1:69:43,26:43:1494:26:928:-63.0672,0,-113.978	1/1:55:0,55:0:0:55:1945:-175.194,-16.5567,0	0/1:77:38,39:38:1355:39:1386:-101.858,0,-99.0704	0/1:79:34,45:34:1201:45:1616:-121.949,0,-84.6123	0/1:67:40,27:40:1410:27:968:-67.2684,0,-107.024	1/1:46:0,46:0:0:46:1646:-148.428,-13.8474,0	0/1:72:49,23:49:1744:23:820:-52.4484,0,-135.57	0/1:21:13,8:13:453:8:288:-19.9458,0,-34.778	0/1:31:19,12:19:668:12:432:-29.8893,0,-51.1137	1/1:32:0,32:0:0:32:1152:-103.987,-9.63296,0	0/1:113:57,56:57:2006:56:1999:-146.167,0,-146.794	1/1:129:0,129:0:0:129:4589:-413.176,-38.8329,0	0/1:72:45,27:45:1608:27:968:-65.7632,0,-123.336	0/1:77:48,29:48:1697:29:1040:-70.7351,0,-129.835	0/1:41:23,18:23:824:18:624:-44.1392,0,-62.1411	0/1:76:45,31:45:1601:31:1112:-77.5131,0,-121.5	1/1:139:0,139:0:0:139:4939:-444.66,-41.8432,0	1/1:123:0,123:0:0:123:4400:-396.169,-37.0267,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:238:111,127:111:3904:127:4518:-335.141,0,-279.908	0/1:46:26,20:26:905:20:720:-51.2814,0,-67.9154	1/1:55:0,55:0:0:55:1959:-176.584,-16.5567,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:9:0,8:0:0:8:288:-25.9076,-2.40824,0	0/1:24:17,7:17:574:7:252:-15.8042,0,-44.7513	0/1:133:79,54:79:2809:54:1932:-134.12,0,-213.012	0/1:43:27,16:27:949:16:572:-38.8691,0,-72.7785	0/1:69:35,34:35:1232:34:1220:-89.3357,0,-90.4102	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:143:75,67:75:2627:67:2381:-171.44,0,-193.569	0/1:37:27,10:27:956:10:356:-21.2431,0,-75.2176	0/1:103:59,44:59:2063:44:1573:-110.853,0,-154.893	0/1:44:23,21:23:824:21:752:-54.7609,0,-61.238	0/1:34:19,15:19:672:15:540:-38.7015,0,-50.5718	1/1:74:0,74:0:0:74:2640:-237.847,-22.2762,0	1/1:69:0,69:0:0:69:2460:-221.655,-20.7711,0	1/1:180:1,179:1:36:179:6366:-569.432,-50.5871,0	0/1:67:33,34:33:1169:34:1209:-88.9451,0,-85.3463	0/1:137:71,66:71:2517:66:2353:-170.786,0,-185.54	0/1:128:71,57:71:2525:57:2029:-144.346,0,-188.966	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:65:0,65:0:0:65:2307:-207.891,-19.567,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:84:35,49:35:1256:49:1735:-131.127,0,-88.0588	0/1:28:16,12:16:561:12:420:-29.7052,0,-42.3883	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:88:0,88:0:0:88:3143:-283.095,-26.4906,0	1/1:65:0,65:0:0:65:2315:-208.61,-19.567,0	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/1:125:59,66:59:2074:66:2368:-175.749,0,-149.299	1/1:90:0,89:0:0:89:3188:-286.783,-26.7917,0	0/1:83:38,45:38:1345:45:1593:-118.673,0,-96.3627	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	0/1:73:25,48:25:900:48:1708:-132.029,0,-59.3458	0/1:110:77,33:77:2703:33:1188:-74.1153,0,-210.398	0/1:53:32,21:32:1118:21:756:-52.4126,0,-84.9689	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:29:16,13:16:576:13:464:-33.3676,0,-43.4451	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:94:54,40:54:1905:40:1428:-100.521,0,-143.429	0/1:75:43,32:43:1525:32:1152:-81.3067,0,-114.964	1/1:69:0,69:0:0:69:2452:-220.933,-20.7711,0	0/1:135:62,73:62:2212:73:2620:-195.408,0,-158.706	0/1:93:46,47:46:1628:47:1688:-124.166,0,-118.805	1/1:101:1,100:1:36:100:3572:-318.09,-26.8058,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:93:0,93:0:0:93:3340:-300.813,-27.9958,0	1/1:75:0,75:0:0:75:2662:-239.818,-22.5773,0	1/1:115:0,115:0:0:115:4120:-370.984,-34.6185,0	0/1:38:23,15:23:809:15:536:-37.1357,0,-61.6892	0/1:56:32,24:32:1144:24:849:-59.871,0,-86.4118	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:92:53,39:53:1896:39:1388:-97.5242,0,-143.223	1/1:26:0,26:0:0:26:922:-83.2971,-7.82678,0	1/1:48:0,48:0:0:48:1701:-153.359,-14.4494,0	1/1:48:0,48:0:0:48:1694:-152.745,-14.4494,0	0/1:58:31,27:31:1104:27:964:-69.6171,0,-82.2109	0/1:84:46,38:46:1644:38:1346:-96.1522,0,-122.962	0/1:68:50,18:50:1768:18:648:-38.1818,0,-138.933	1/1:94:0,94:0:0:94:3368:-303.334,-28.2968,0	1/1:75:2,73:2:68:73:2620:-229.59,-16.1195,0
chr07	1611227	.	G	T	40178.6	PASS	AB=0.559602;ABP=130.104;AC=55;AF=0.292553;AN=188;AO=2316;CIGAR=1X;DP=6468;DPB=6468;DPRA=1.42863;EPP=5032.14;EPPR=9008.11;GTI=4;LEN=1;MEANALT=1.03448;MQM=59.9788;MQMR=59.9585;NS=94;NUMALT=1;ODDS=0.464295;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82850;QR=148453;RO=4147;RPL=2316;RPP=5032.14;RPPR=9008.11;RPR=0;RUN=1;SAF=0;SAP=5032.14;SAR=2316;SRF=0;SRP=9008.11;SRR=4147;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:17,41:17:612:41:1472:-115.316,0,-37.9503	0/1:37:11,26:11:396:26:932:-72.9545,0,-24.8446	0/1:82:43,39:43:1536:39:1384:-100.172,0,-113.849	0/1:187:75,112:75:2672:112:4006:-304.436,0,-184.434	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:122:48,74:48:1712:74:2633:-200.49,0,-117.64	0/1:112:52,60:52:1860:60:2137:-158.881,0,-133.858	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/1:70:27,43:27:972:43:1548:-118.541,0,-66.7258	0/0:52:52,0:52:1864:0:0:0,-15.6536,-167.412	0/1:77:40,37:40:1428:37:1324:-96.2828,0,-105.638	0/1:83:46,37:46:1652:37:1328:-94.8367,0,-123.983	0/1:72:28,44:28:1004:44:1578:-120.637,0,-69.0017	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:71:23,48:23:808:48:1728:-134.432,0,-51.667	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:32:12,20:12:428:20:720:-55.4958,0,-29.2258	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.505	0/1:116:55,61:55:1976:61:2192:-162.626,0,-143.195	0/0:130:130,0:130:4648:0:0:0,-39.1339,-418.48	0/1:74:27,47:27:972:47:1692:-130.291,0,-65.5217	0/1:76:27,49:27:968:49:1764:-136.165,0,-64.5591	0/1:41:18,23:18:640:23:809:-60.7861,0,-45.5871	0/1:77:32,45:32:1148:45:1620:-122.911,0,-80.4505	0/0:138:138,0:138:4924:0:0:0,-41.5421,-443.313	0/0:123:123,0:123:4404:0:0:0,-37.0267,-396.528	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:245:129,116:129:4625:116:4120:-297.233,0,-342.658	0/1:48:20,28:20:720:28:993:-75.2331,0,-50.6793	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.753	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:19:18,0:18:648:0:0:0,-5.41854,-58.434	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.5032	0/1:140:55,85:55:1972:85:3060:-233.484,0,-135.611	0/1:45:16,29:16:572:29:1025:-79.0143,0,-38.2671	0/1:69:34,35:34:1220:35:1252:-92.214,0,-89.3357	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:147:66,81:66:2364:81:2881:-215.275,0,-168.767	0/1:40:11,29:11:388:29:1044:-82.2336,0,-23.2162	0/1:105:45,60:45:1612:60:2148:-161.893,0,-113.761	0/1:47:22,25:22:788:25:900:-67.1726,0,-57.0964	0/1:33:12,21:12:428:21:756:-58.4332,0,-28.9248	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:175:174,1:174:6216:1:36:0,-49.082,-555.94	0/1:70:35,35:35:1248:35:1260:-92.6334,0,-91.5528	0/1:137:65,72:65:2332:72:2580:-191.208,0,-168.898	0/1:126:56,70:56:2008:70:2520:-189.119,0,-143.064	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:45:44,1:44:1576:1:36:0,-9.94807,-138.447	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:81:46,35:46:1648:35:1260:-89.3221,0,-124.222	0/1:32:13,19:13:468:19:684:-52.2574,0,-32.8267	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:91:88,3:88:3160:3:108:0,-17.3186,-274.549	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/1:10:5,5:5:180:5:156:-11.3367,0,-13.5418	0/1:126:65,60:65:2332:60:2152:-155.998,0,-172.19	0/0:90:89,0:89:3188:0:0:0,-26.7917,-286.781	0/1:84:45,39:45:1608:39:1381:-99.3002,0,-119.724	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:73:48,25:48:1724:25:884:-57.9032,0,-133.47	0/1:113:33,80:33:1184:80:2876:-225.06,0,-72.8519	0/1:56:21,35:21:756:35:1252:-96.1274,0,-51.5095	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:31:13,18:13:464:18:644:-48.9587,0,-32.7656	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:93:39,54:39:1400:54:1929:-145.889,0,-98.3034	0/1:76:32,44:32:1148:44:1576:-119.253,0,-80.6454	0/0:68:67,0:67:2404:0:0:0,-20.169,-216.257	0/1:136:74,62:74:2656:62:2216:-158.764,0,-198.346	0/1:103:48,55:48:1720:55:1953:-145.036,0,-124.034	0/0:102:102,0:102:3672:0:0:0,-30.7051,-330.681	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.635	0/0:119:119,0:119:4248:0:0:0,-35.8226,-382.5	0/1:38:15,23:15:532:23:820:-62.6828,0,-36.7739	0/1:58:24,34:24:852:34:1220:-92.6471,0,-59.5406	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:94:39,54:39:1392:54:1929:-145.529,0,-97.2235	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.021	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:58:27,31:27:968:31:1112:-82.9316,0,-69.9776	0/1:87:38,49:38:1344:49:1760:-132.494,0,-95.0705	0/1:69:18,51:18:644:51:1808:-142.23,0,-37.5195	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.049	0/0:74:73,1:73:2604:1:36:0,-18.6779,-231.011
chr07	1632297	.	TAATC	CAATT,TAATT	138604	PASS	AB=0.440495,0.556994;ABP=162.202,149.048;AC=133,55;AF=0.707447,0.292553;AN=188;AO=4861,2892;CIGAR=1X3M1X,4M1X;DP=7776;DPB=7775.8;DPRA=27.8602,1.48187;EPP=10558.5,6282.91;EPPR=0;GTI=6;LEN=5,1;MEANALT=1.87097,2.2;MQM=32.5733,55.3862;MQMR=0;NS=94;NUMALT=2;ODDS=0.175011;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=171278,103131;QR=0;RO=0;RPL=4861,2892;RPP=10558.5,6282.91;RPPR=0;RPR=0,0;RUN=1,1;SAF=4861,2892;SAP=10558.5,6282.91;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:98:0,58,40:0:0:58,40:2021,1423:-246.386,-115.407,-97.9474,-131.304,0,-119.263	1/2:76:0,37,39:0:0:37,39:1307,1393:-198.98,-113.662,-102.524,-85.6397,0,-73.8996	1/2:217:0,98,118:0:0:98,118:3477,4244:-572.34,-345.535,-316.034,-226.854,0,-191.332	1/2:232:0,92,139:0:0:92,139:3233,4972:-633.855,-405.11,-377.416,-228.794,0,-186.951	1/1:61:0,61,0:0:0:61,0:2181,0:-167.725,-18.3628,0,-167.725,-18.3628,-167.725	1/1:26:0,26,0:0:0:26,0:912,0:-67.7453,-7.82678,0,-67.7453,-7.82678,-67.7453	1/2:99:0,35,64:0:0:35,64:1228,2270:-271.223,-183.758,-173.222,-87.7912,0,-68.5253	1/2:174:0,64,110:0:0:64,110:2243,3939:-466.427,-321.056,-301.79,-145.683,0,-112.57	1/1:94:0,93,1:0:0:93,1:3284,36:-241.009,-27.9958,0,-238.074,-24.7023,-237.773	1/2:85:0,37,48:0:0:37,48:1319,1707:-232.994,-139.388,-128.25,-93.9385,0,-79.4891	1/1:62:0,62,0:0:0:62,0:2200,0:-174.504,-18.6639,0,-174.504,-18.6639,-174.504	1/2:74:0,43,31:0:0:43,31:1512,1104:-188.13,-90.1986,-77.2543,-98.2584,0,-88.9264	1/2:74:0,42,32:0:0:42,32:1484,1139:-188.366,-92.9002,-80.2569,-95.7908,0,-86.1579	1/2:53:0,28,25:0:0:28,25:955,867:-135.978,-70.7057,-62.2769,-65.5933,0,-58.0676	1/2:79:0,35,44:0:0:35,44:1229,1571:-214.782,-127.904,-117.368,-87.2073,0,-73.9619	1/2:75:0,32,43:0:0:32,43:1119,1528:-198.729,-124.735,-115.102,-74.3124,0,-61.3681	1/2:34:0,16,18:0:0:16,18:561,648:-90.2772,-53.1068,-48.2903,-37.4938,0,-32.0753	1/2:26:0,14,12:0:0:14,12:494,428:-67.6924,-35.0903,-30.8759,-32.9283,0,-29.3159	1/1:25:0,24,0:0:0:24,0:828,0:-61.1302,-7.22472,0,-61.1302,-7.22472,-61.1302	1/2:179:0,93,86:0:0:93,86:3276,3043:-480.907,-247.522,-219.527,-233.718,0,-207.83	1/1:182:0,181,0:0:0:181,0:6341,0:-484.264,-54.4864,0,-484.264,-54.4864,-484.264	1/2:118:0,24,94:0:0:24,94:844,3384:-339.013,-276.18,-268.955,-63.1648,0,-34.868	1/2:144:0,48,96:0:0:48,96:1702,3391:-395.718,-276.121,-261.671,-119.922,0,-91.023	1/2:121:0,54,67:0:0:54,67:1917,2387:-325.388,-194.077,-177.821,-131.638,0,-111.469	1/2:107:0,37,70:0:0:37,70:1325,2507:-293.139,-203.826,-192.688,-89.6338,0,-68.5617	1/1:205:0,205,0:0:0:205,0:7239,0:-595.102,-61.7112,0,-595.102,-61.7112,-595.102	1/1:208:0,208,0:0:0:208,0:7293,0:-559.838,-62.6142,0,-559.838,-62.6142,-559.838	1/1:24:0,24,0:0:0:24,0:842,0:-65.2101,-7.22472,0,-65.2101,-7.22472,-65.2101	1/2:158:0,111,47:0:0:111,47:3892,1643:-421.777,-133.961,-100.547,-288.157,0,-274.008	1/2:101:0,51,50:0:0:51,50:1796,1792:-264.596,-144.648,-129.295,-120.273,0,-105.222	1/1:74:0,73,1:0:0:73,1:2548,36:-205.666,-21.9752,0,-202.729,-18.6797,-202.428	1/1:1:0,1,0:0:0:1,0:36,0:-3.05454,-0.30103,0,-3.05454,-0.30103,-3.05454	1/1:15:0,15,0:0:0:15,0:537,0:-40.1662,-4.51545,0,-40.1662,-4.51545,-40.1662	1/1:7:0,7,0:0:0:7,0:248,0:-18.4934,-2.10721,0,-18.4934,-2.10721,-18.4934	1/1:4:0,4,0:0:0:4,0:139,0:-10.5955,-1.20412,0,-10.5955,-1.20412,-10.5955	1/2:24:0,13,11:0:0:13,11:457,392:-62.1252,-32.2737,-28.3603,-30.1767,0,-26.8654	1/2:146:0,79,67:0:0:79,67:2803,2384:-399.147,-194.442,-170.661,-205.045,0,-184.876	1/2:104:0,39,64:0:0:39,64:1374,2300:-280.659,-187.42,-175.68,-93.3005,0,-74.0346	1/2:19:0,6,13:0:0:6,13:210,455:-51.0129,-37.1043,-35.2981,-14.2178,0,-10.3044	2/2:3:0,0,3:0:0:0,3:0,108:-10.0648,-10.0648,-10.0648,-0.90309,-0.90309,0	1/2:122:0,42,79:0:0:42,79:1474,2793:-327.226,-226.972,-214.329,-100.295,0,-76.5136	1/2:25:0,11,14:0:0:11,14:386,500:-67.5081,-40.9591,-37.6477,-26.8745,0,-22.6601	1/2:214:0,57,156:0:0:57,156:2008,5587:-589.993,-453.565,-436.407,-136.439,0,-89.4779	1/2:55:0,27,28:0:0:27,28:958,968:-146.472,-78.9235,-70.7957,-67.8768,0,-59.448	1/2:47:0,25,22:0:0:25,22:871,775:-125.69,-63.3472,-55.8214,-62.6752,0,-56.0525	1/1:72:0,72,0:0:0:72,0:2506,0:-204.46,-21.6742,0,-204.46,-21.6742,-204.46	1/1:74:0,74,0:0:0:74,0:2589,0:-191.139,-22.2762,0,-191.139,-22.2762,-191.139	1/1:83:0,82,0:0:0:82,0:2890,0:-229.548,-24.6845,0,-229.548,-24.6845,-229.548	1/2:49:0,26,23:0:0:26,23:914,824:-132.877,-67.525,-59.6982,-65.6888,0,-58.7651	1/2:153:0,67,86:0:0:67,86:2351,3079:-418.555,-250.973,-230.804,-167.914,0,-142.025	1/2:103:0,45,58:0:0:45,58:1578,2075:-286.159,-169.357,-155.811,-117.139,0,-99.6794	1/1:6:0,6,0:0:0:6,0:216,0:-17.5319,-1.80618,0,-17.5319,-1.80618,-17.5319	1/1:76:0,76,0:0:0:76,0:2682,0:-195.811,-22.8783,0,-195.811,-22.8783,-195.811	1/1:88:0,86,1:0:0:86,1:3011,36:-250.273,-25.8886,0,-247.336,-22.895,-247.035	1/2:5:0,2,3:0:0:2,3:72,108:-13.7569,-9.1617,-8.55964,-4.91319,0,-4.0101	1/2:186:0,99,86:0:0:99,86:3500,3078:-486.652,-250.544,-220.742,-236.229,0,-210.341	1/2:35:0,21,14:0:0: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chr07	1632307	.	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chr07	1716727	.	A	T	154947	PASS	AB=0.545644;ABP=89.8348;AC=135;AF=0.718085;AN=188;AO=7350;CIGAR=1X;DP=9547;DPB=9547;DPRA=102.645;EPP=15963.3;EPPR=4743.33;GTI=3;LEN=1;MEANALT=1.13978;MQM=59.9917;MQMR=59.9945;NS=94;NUMALT=1;ODDS=1.31797;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262969;QR=78101;RO=2183;RPL=7350;RPP=15963.3;RPPR=4743.33;RPR=0;RUN=1;SAF=0;SAP=15963.3;SAR=7350;SRF=0;SRP=4743.33;SRR=2183;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:41,31:41:1468:31:1101:-77.7242,0,-110.742	0/1:76:26,50:26:932:50:1792:-138.684,0,-61.3206	0/1:132:55,77:55:1968:77:2749:-207.915,0,-137.659	0/1:248:118,129:118:4236:129:4614:-340.708,0,-306.704	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:44:0,44:0:0:44:1572:-141.771,-13.2453,0	0/1:123:42,80:42:1508:80:2872:-221.631,0,-98.9291	0/1:174:74,100:74:2630:100:3556:-267.867,0,-184.565	1/1:191:0,191:0:0:191:6872:-618.544,-57.4967,0	0/1:118:43,75:43:1540:75:2688:-206.642,0,-103.372	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:152:66,86:66:2368:86:3069:-230.677,0,-167.621	1/1:89:0,89:0:0:89:3188:-287.144,-26.7917,0	0/1:64:32,32:32:1140:32:1148:-84.3639,0,-83.6433	0/1:98:52,46:52:1868:46:1656:-119.827,0,-138.898	0/1:61:25,35:25:900:35:1252:-94.5635,0,-62.8994	0/1:34:17,17:17:599:17:612:-45.1784,0,-44.0031	0/1:39:20,19:20:708:19:684:-50.1502,0,-52.3054	1/1:40:0,40:0:0:40:1435:-129.448,-12.0412,0	0/1:112:56,56:56:2008:56:1986:-145.295,0,-147.278	1/1:240:0,238:0:0:238:8491:-763.829,-71.6451,0	0/1:55:38,17:38:1360:17:582:-36.1422,0,-106.144	0/1:152:83,69:83:2965:69:2461:-175.986,0,-221.324	0/1:41:15,26:15:536:26:932:-71.8566,0,-36.2326	0/1:73:38,34:38:1368:34:1193:-85.6381,0,-101.387	1/1:357:1,356:1:36:356:12724:-1141.38,-103.869,0	1/1:259:1,258:1:36:258:9250:-828.865,-74.3685,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:172:74,98:74:2656:98:3520:-265.232,0,-187.509	1/1:137:0,136:0:0:136:4849:-436.201,-40.9401,0	1/1:138:0,138:0:0:138:4944:-445.109,-41.5421,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:14:9,5:9:324:5:168:-11.2351,0,-25.2914	0/1:264:102,162:102:3664:162:5792:-441.921,0,-250.491	0/1:76:29,47:29:1040:47:1658:-126.468,0,-71.0361	0/1:55:24,31:24:864:31:1116:-84.195,0,-61.5259	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:95:31,64:31:1116:64:2285:-177.312,0,-72.1538	0/1:29:14,15:14:495:15:540:-40.2067,0,-36.1532	0/1:121:49,72:49:1737:72:2573:-195.393,0,-120.188	0/1:84:43,41:43:1536:41:1476:-107.85,0,-113.247	0/1:109:43,66:43:1544:66:2364:-180.206,0,-106.441	1/1:163:0,162:0:0:162:5775:-519.502,-48.7669,0	1/1:147:0,147:0:0:147:5253:-472.904,-44.2514,0	1/1:207:0,207:0:0:207:7350:-661.548,-62.3132,0	0/1:67:30,37:30:1068:37:1324:-99.2931,0,-76.2631	0/1:136:58,78:58:2088:78:2781:-209.589,0,-147.25	0/1:35:17,18:17:604:18:648:-48.1158,0,-44.1546	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:121:0,121:0:0:121:4344:-391.133,-36.4246,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:149:57,92:57:2031:92:3282:-250.745,0,-138.208	0/1:48:21,27:21:752:27:968:-72.9879,0,-53.5568	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:119:0,119:0:0:119:4265:-384.026,-35.8226,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:190:0,190:0:0:190:6801:-612.16,-57.1957,0	1/1:193:0,193:0:0:193:6909:-621.875,-58.0988,0	0/1:67:41,26:41:1472:26:928:-63.6692,0,-112.607	1/1:69:0,69:0:0:69:2484:-223.813,-20.7711,0	0/1:165:84,81:84:2956:81:2908:-212.285,0,-216.599	0/1:119:56,63:56:1976:63:2253:-167.209,0,-142.29	0/1:34:14,20:14:500:20:716:-54.5327,0,-35.1012	1/1:81:0,81:0:0:81:2886:-259.977,-24.3834,0	0/1:54:25,29:25:896:29:1026:-76.3811,0,-64.7047	1/1:13:0,12:0:0:12:432:-38.8614,-3.61236,0	0/1:122:64,58:64:2296:58:2088:-151.464,0,-170.175	0/1:148:69,79:69:2465:79:2840:-211.285,0,-177.55	1/1:214:0,213:0:0:213:7613:-684.848,-64.1194,0	0/1:125:56,69:56:2008:69:2480:-185.824,0,-143.365	0/1:90:38,52:38:1364:52:1864:-140.947,0,-95.968	1/1:145:2,142:2:72:142:5054:-448.168,-36.8714,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:90:2,88:2:72:88:3137:-275.718,-20.256,0	1/1:130:0,129:0:0:129:4611:-414.793,-38.8329,0	1/1:338:0,337:0:0:337:12067:-1085.51,-101.447,0	0/1:73:31,42:31:1116:42:1512:-114.399,0,-78.7765	0/1:83:47,35:47:1684:35:1260:-88.8069,0,-126.949	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:188:86,102:86:3075:102:3660:-273.009,0,-220.384	1/1:32:0,32:0:0:32:1128:-101.828,-9.63296,0	1/1:104:0,104:0:0:104:3744:-337.158,-31.3071,0	1/1:89:0,89:0:0:89:3184:-286.784,-26.7917,0	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/1:102:45,57:45:1616:57:2030:-152.267,0,-115.025	0/1:91:52,39:52:1868:39:1396:-98.5448,0,-141.006	1/1:162:0,162:0:0:162:5816:-523.551,-48.7669,0	1/1:201:1,200:1:36:200:7192:-643.733,-56.9088,0
chr07	1716733	.	C	T	36203.3	PASS	AB=0.461474;ABP=64.9167;AC=53;AF=0.281915;AN=188;AO=2223;CIGAR=1X;DP=9490;DPB=9490;DPRA=0.870921;EPP=4830.19;EPPR=15778.8;GTI=2;LEN=1;MEANALT=1.01818;MQM=59.9991;MQMR=59.9915;NS=94;NUMALT=1;ODDS=0.0540946;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79555;QR=258635;RO=7265;RPL=2223;RPP=4830.19;RPPR=15778.8;RPR=0;RUN=1;SAF=0;SAP=4830.19;SAR=2223;SRF=0;SRP=15778.8;SRR=7265;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:32,45:32:1144:45:1616:-122.551,0,-80.0902	0/1:78:50,28:50:1796:28:1002:-67.0154,0,-138.442	0/1:132:77,55:77:2730:55:1961:-137.027,0,-206.205	0/1:250:127,123:127:4534:123:4412:-321.994,0,-332.967	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692	0/0:43:43,0:43:1521:0:0:0,-12.9443,-137.181	0/1:120:77,43:77:2756:43:1514:-100.426,0,-212.158	0/1:172:99,73:99:3548:73:2586:-181.209,0,-267.751	0/0:190:190,0:190:6751:0:0:0,-57.1957,-607.665	0/1:116:73,43:73:2594:43:1540:-103.974,0,-198.786	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:153:86,67:86:3057:67:2394:-169.659,0,-229.195	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/1:63:32,31:32:1148:31:1116:-81.7868,0,-84.6649	0/1:99:46,53:46:1637:53:1908:-142.196,0,-117.815	0/1:58:33,25:33:1175:25:900:-63.8613,0,-88.5972	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	0/1:40:19,21:19:680:21:748:-55.6035,0,-49.488	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:114:58,56:58:2046:56:1997:-145.685,0,-150.091	0/0:235:235,0:235:8378:0:0:0,-70.742,-754.027	0/1:56:17,39:17:612:39:1400:-109.442,0,-38.5558	0/1:152:69,83:69:2464:83:2965:-221.324,0,-176.258	0/1:42:27,15:27:960:15:540:-36.2933,0,-74.073	0/1:72:34,38:34:1216:38:1368:-101.747,0,-88.0724	0/0:355:354,0:354:12534:0:0:0,-106.565,-1127.53	0/0:261:261,0:261:9303:0:0:0,-78.5688,-837.237	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:175:98,77:98:3498:77:2768:-196.68,0,-262.347	0/0:136:136,0:136:4838:0:0:0,-40.9401,-435.574	0/0:139:139,0:139:4924:0:0:0,-41.8432,-443.309	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:267:161,105:161:5744:105:3772:-259.244,0,-436.642	0/1:77:47,30:47:1676:30:1076:-73.9735,0,-127.877	0/1:56:31,25:31:1093:25:896:-64.1027,0,-81.82	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:93:62,31:62:2220:31:1112:-72.3956,0,-172.069	0/1:29:15,14:15:536:14:504:-36.9682,0,-39.8449	0/1:123:72,51:72:2539:51:1828:-127.774,0,-191.73	0/1:80:39,41:39:1374:41:1468:-108.334,0,-99.8722	0/1:107:64,43:64:2281:43:1544:-107.043,0,-173.34	0/0:161:161,0:161:5749:0:0:0,-48.4658,-517.526	0/0:147:147,0:147:5207:0:0:0,-44.2514,-468.77	0/0:205:205,0:205:7323:0:0:0,-61.7111,-659.116	0/1:67:37,30:37:1283:30:1057:-75.27,0,-95.5956	0/1:137:77,60:77:2727:60:2144:-151.986,0,-204.428	0/1:36:18,18:18:644:18:644:-47.4535,0,-47.4535	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:122:122,0:122:4354:0:0:0,-36.7257,-392.032	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:148:90,58:90:3194:58:2084:-143.278,0,-243.129	0/1:48:25,23:25:900:23:824:-60.0339,0,-66.8716	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:81:81,0:81:2878:0:0:0,-24.3834,-259.254	0/0:117:117,0:117:4189:0:0:0,-35.2205,-377.19	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/0:188:188,0:188:6704:0:0:0,-56.5936,-603.431	0/0:189:189,0:189:6708:0:0:0,-56.8947,-603.796	0/1:69:26,43:26:917:43:1544:-118.482,0,-62.0735	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:163:79,84:79:2772:84:2967:-218.192,0,-200.649	0/1:117:63,54:63:2256:54:1921:-137.945,0,-168.082	0/1:34:20,14:20:716:14:504:-35.4631,0,-54.5327	0/0:80:80,0:80:2819:0:0:0,-24.0824,-253.946	0/1:52:27,25:27:972:25:896:-65.3068,0,-72.0144	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:123:57,66:57:2048:66:2364:-175.992,0,-147.565	0/1:146:75,71:75:2665:71:2548:-185.62,0,-196.145	0/0:211:211,0:211:7470:0:0:0,-63.5173,-672.344	0/1:126:69,57:69:2484:57:2048:-146.662,0,-185.883	0/1:91:50,41:50:1773:41:1472:-105.382,0,-132.457	0/0:145:142,3:142:5068:3:108:0,-33.5742,-446.191	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:85:83,2:83:2954:2:72:0,-18.7508,-259.254	0/0:127:127,0:127:4495:0:0:0,-38.2308,-404.719	0/0:330:330,0:330:11745:0:0:0,-99.3399,-1056.91	0/1:73:41,32:41:1464:32:1152:-82.015,0,-110.081	0/1:83:36,47:36:1288:47:1669:-125.51,0,-91.2381	0/0:63:63,0:63:2237:0:0:0,-18.9649,-201.592	0/1:185:99,86:99:3499:86:3074:-221.197,0,-259.428	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:34:15,19:15:536:19:680:-51.2941,0,-38.3398	0/1:103:56,47:56:2000:47:1684:-120.841,0,-149.268	0/1:91:39,52:39:1395:52:1868:-141.006,0,-98.4546	0/0:162:162,0:162:5762:0:0:0,-48.7669,-518.696	0/0:198:197,1:197:7008:1:36:0,-56.0057,-627.186
chr07	1720850	.	C	G	193105	PASS	AB=0.593183;ABP=1053.98;AC=52;AF=0.276596;AN=188;AO=8283;CIGAR=1X;DP=23700;DPB=23700;DPRA=1.42177;EPP=17989.3;EPPR=33430.7;GTI=4;LEN=1;MEANALT=1.22388;MQM=59.959;MQMR=59.7754;NS=94;NUMALT=1;ODDS=0.134185;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293219;QR=544199;RO=15398;RPL=5074;RPP=914.862;RPPR=2352.84;RPR=3209;RUN=1;SAF=5074;SAP=914.862;SAR=3209;SRF=9741;SRP=2355.14;SRR=5657;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:19,12:19:671:12:415:-28.3484,0,-51.3839	0/1:133:79,54:79:2787:54:1888:-130.159,0,-211.033	0/1:177:71,105:71:2473:105:3698:-279.817,0,-169.619	0/1:566:241,324:241:8518:324:11452:-860.12,0,-596.182	0/0:141:139,1:139:4971:1:36:0,-38.9058,-443.917	0/0:50:49,1:49:1752:1:36:0,-11.4532,-154.366	0/1:283:103,180:103:3636:180:6371:-488.292,0,-242.246	0/1:188:65,123:65:2288:123:4229:-324.195,0,-149.587	0/0:59:59,0:59:2077:0:0:0,-17.7608,-187.199	0/1:246:90,156:90:3189:156:5578:-428.089,0,-213.15	0/0:476:476,0:476:16844:0:0:0,-143.29,-1515.38	0/1:68:32,36:32:1091:36:1239:-91.3379,0,-77.9769	0/0:59:59,0:59:2077:0:0:0,-17.7608,-187.199	0/1:149:56,93:56:1974:93:3240:-246.967,0,-131.881	0/1:114:48,66:48:1693:66:2317:-174.467,0,-118.337	0/1:107:53,54:53:1859:54:1889:-138.077,0,-135.343	0/1:83:38,45:38:1317:45:1562:-115.881,0,-93.8416	0/1:53:19,34:19:648:34:1174:-90.0063,0,-42.6825	0/0:36:36,0:36:1270:0:0:0,-10.8371,-114.601	0/1:376:149,227:149:5241:227:8063:-612.492,0,-358.514	0/0:185:184,1:184:6536:1:26:0,-53.0907,-585.646	0/1:186:44,142:44:1560:142:5049:-398.566,0,-84.695	0/1:162:60,102:60:2132:102:3591:-274.63,0,-142.891	0/1:186:72,114:72:2511:114:3982:-302.567,0,-170.239	0/1:201:84,117:84:2987:117:4138:-312.098,0,-208.272	0/0:500:499,1:499:17555:1:36:0,-146.917,-1575.97	0/0:364:364,0:364:12913:0:0:0,-109.575,-1161.7	0/0:49:49,0:49:1711:0:0:0,-14.7505,-154.272	0/1:479:187,292:187:6595:292:10363:-788.406,0,-448.815	0/0:248:248,0:248:8726:0:0:0,-74.6554,-785.347	0/0:207:205,2:205:7245:2:72:0,-55.4765,-645.242	0/0:790:789,1:789:28068:1:36:0,-234.215,-2521.01	0/0:624:622,1:622:22100:1:36:0,-184.303,-1984.34	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5295	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.1638	0/1:360:174,186:174:6122:186:6551:-481.304,0,-442.72	0/1:368:157,211:157:5569:211:7484:-562.827,0,-390.418	0/1:57:18,39:18:640:39:1353:-104.907,0,-40.7706	0/1:774:284,489:284:10112:489:17472:-1337.91,0,-676.678	0/1:313:109,202:109:3803:202:7105:-545.537,0,-248.481	0/1:278:126,151:126:4493:151:5363:-399.062,0,-320.771	0/1:270:103,166:103:3661:166:5905:-450.208,0,-248.348	0/1:118:50,68:50:1730:68:2334:-174.793,0,-120.459	0/1:109:50,59:50:1766:59:2062:-153.033,0,-126.405	0/0:159:159,0:159:5603:0:0:0,-47.8638,-504.393	0/0:88:88,0:88:3105:0:0:0,-26.4906,-279.679	0/0:232:231,1:231:8094:1:36:0,-66.2407,-724.893	0/1:285:120,164:120:4210:164:5793:-435.634,0,-293.224	0/1:323:169,154:169:5947:154:5448:-393.219,0,-438.103	0/1:279:127,152:127:4490:152:5359:-398.445,0,-319.792	0/0:928:928,0:928:32738:0:0:0,-279.356,-2944.83	0/0:130:129,1:129:4571:1:36:0,-35.5356,-407.959	0/0:121:121,0:121:4271:0:0:0,-36.4246,-384.569	0/1:15:8,7:8:284:7:248:-18.1472,0,-21.3879	0/1:295:126,169:126:4461:169:5982:-449.458,0,-312.842	0/1:104:35,69:35:1231:69:2403:-185.217,0,-79.7861	0/1:1271:414,855:414:14643:855:30453:-2356.97,0,-934.538	0/0:988:987,0:987:34778:0:0:0,-297.117,-3127.87	0/0:185:185,0:185:6547:0:0:0,-55.6905,-589.131	0/0:189:186,2:186:6598:2:72:0,-50.1167,-587.066	0/1:795:299,495:299:10558:495:17628:-1346.77,0,-710.625	0/0:124:124,0:124:4402:0:0:0,-37.3277,-395.865	0/0:256:255,1:255:9033:1:36:0,-73.4654,-809.246	0/1:140:57,83:57:2017:83:2953:-223.859,0,-139.653	0/0:135:134,0:134:4756:0:0:0,-40.338,-427.749	0/1:330:118,212:118:4149:212:7458:-571.923,0,-274.247	0/1:228:51,177:51:1808:177:6298:-498.279,0,-94.3594	0/1:387:198,189:198:7064:189:6763:-492.244,0,-519.223	0/0:57:56,1:56:1913:1:32:0,-13.9594,-169.239	0/1:131:64,67:64:2256:67:2351:-172.413,0,-163.805	0/0:802:801,1:801:28303:1:36:0,-237.828,-2542.55	0/1:98:33,65:33:1141:65:2233:-171.729,0,-73.4922	0/1:68:24,44:24:848:44:1548:-119.141,0,-56.1696	0/0:217:217,0:217:7706:0:0:0,-65.3235,-693.216	0/1:311:108,203:108:3843:203:7183:-552.907,0,-252.437	0/1:189:79,110:79:2763:110:3865:-291.15,0,-192.012	0/0:142:141,1:141:5008:1:36:0,-39.148,-447.252	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.3651	0/0:226:224,1:224:7962:1:32:0,-64.8723,-713.338	0/0:123:123,0:123:4373:0:0:0,-37.0267,-393.745	0/0:282:282,0:282:9968:0:0:0,-84.8905,-897.036	0/1:193:96,97:96:3356:97:3410:-249.017,0,-244.155	0/1:126:51,75:51:1786:75:2663:-201.987,0,-123.089	0/0:161:161,0:161:5643:0:0:0,-48.4658,-507.99	0/1:243:103,140:103:3602:140:4948:-372.324,0,-251.038	0/0:49:49,0:49:1709:0:0:0,-14.7505,-154.093	0/0:45:45,0:45:1529:0:0:0,-13.5463,-137.896	0/0:77:77,0:77:2724:0:0:0,-23.1793,-245.403	0/1:581:288,293:288:10280:293:10500:-770.005,0,-750.03	0/1:955:456,497:456:16248:497:17693:-1304.75,0,-1173.34	0/1:144:47,97:47:1654:97:3398:-262.688,0,-105.798	0/0:88:88,0:88:3097:0:0:0,-26.4906,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chr07	1744524	.	T	A	130387	PASS	AB=0.491587;ABP=10.2444;AC=52;AF=0.276596;AN=188;AO=5796;CIGAR=1X;DP=21197;DPB=21197;DPRA=1.37678;EPP=12588.9;EPPR=33406.8;GTI=0;LEN=1;MEANALT=1.15254;MQM=59.9624;MQMR=59.9903;NS=94;NUMALT=1;ODDS=12.8767;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205050;QR=548395;RO=15383;RPL=3201;RPP=140.595;RPPR=319.352;RPR=2595;RUN=1;SAF=3201;SAP=140.595;SAR=2595;SRF=8440;SRP=319.352;SRR=6943;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:38,27:38:1347:27:941:-65.0753,0,-101.603	0/1:369:203,166:203:7223:166:5896:-419.6,0,-539.047	0/1:279:146,133:146:5211:133:4721:-340.747,0,-385.142	0/1:306:165,141:165:5899:141:4987:-356.864,0,-438.905	0/0:149:149,0:149:5312:0:0:0,-44.8535,-478.186	0/0:129:129,0:129:4602:0:0:0,-38.8329,-414.345	0/1:303:155,148:155:5551:148:5260:-382.324,0,-408.501	0/1:473:255,218:255:9099:218:7742:-554.419,0,-676.492	0/0:222:222,0:222:7903:0:0:0,-66.8287,-711.298	0/1:364:189,175:189:6751:175:6128:-442.05,0,-498.09	0/0:164:164,0:164:5801:0:0:0,-49.3689,-522.208	0/1:171:78,93:78:2762:93:3299:-245.653,0,-197.346	0/0:165:165,0:165:5891:0:0:0,-49.6699,-530.301	0/1:175:85,90:85:3019:90:3162:-232.121,0,-219.262	0/1:194:94,100:94:3350:100:3530:-259.509,0,-243.317	0/1:141:69,72:69:2451:72:2531:-185.595,0,-178.395	0/1:171:69,102:69:2450:102:3612:-273.811,0,-169.278	0/1:181:94,87:94:3326:87:3092:-224.02,0,-245.073	0/0:118:118,0:118:4211:0:0:0,-35.5215,-379.163	0/1:494:271,221:271:9699:221:7844:-557.49,0,-724.264	0/0:380:380,0:380:13538:0:0:0,-114.391,-1218.21	0/1:183:67,116:67:2389:116:4127:-316.453,0,-160.177	0/1:171:91,76:91:3236:76:2695:-192.163,0,-240.829	0/1:280:144,136:144:5151:136:4714:-340.137,0,-379.443	0/1:170:101,69:101:3594:69:2445:-169.127,0,-272.492	0/0:880:878,1:878:31288:1:32:0,-261.746,-2811.76	0/0:443:442,1:442:15754:1:36:0,-129.758,-1413.96	0/0:87:87,0:87:3065:0:0:0,-26.1896,-276.08	0/1:575:306,269:306:10919:269:9526:-684.195,0,-809.516	0/0:230:230,0:230:8182:0:0:0,-69.2369,-736.4	0/0:270:270,0:270:9615:0:0:0,-81.2781,-865.308	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7464	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:37:16,21:16:563:21:743:-56.0552,0,-39.8611	0/1:412:221,190:221:7883:190:6681:-477.377,0,-585.506	0/1:312:171,141:171:6101:141:4990:-355.328,0,-455.27	0/1:144:74,70:74:2609:70:2480:-180.106,0,-191.71	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:333:186,147:186:6659:147:5213:-369.067,0,-499.144	0/1:108:51,57:51:1832:57:2024:-149.922,0,-132.65	0/1:265:129,136:129:4608:136:4765:-349.239,0,-335.108	0/1:216:100,116:100:3596:116:4083:-302.636,0,-258.823	0/1:114:50,64:50:1792:64:2259:-169.254,0,-127.245	0/0:215:215,0:215:7678:0:0:0,-64.7214,-691.056	0/0:348:348,0:348:12369:0:0:0,-104.758,-1113.05	0/0:305:304,1:304:10864:1:36:0,-88.2159,-974.063	0/1:197:98,99:98:3496:99:3525:-258.139,0,-255.549	0/1:420:225,195:225:8036:195:6886:-493.376,0,-596.827	0/1:390:215,175:215:7696:175:6238:-444.116,0,-575.273	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:465:464,0:464:16572:0:0:0,-139.678,-1490.88	0/0:79:79,0:79:2808:0:0:0,-23.7814,-252.958	0/1:23:9,14:9:324:14:496:-38.0506,0,-22.5822	0/1:361:188,173:188:6690:173:6144:-444.387,0,-493.509	0/1:107:44,63:44:1567:63:2240:-169.654,0,-109.111	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:243:243,0:243:8681:0:0:0,-73.1503,-781.28	0/0:239:239,0:239:8499:0:0:0,-71.9462,-764.915	0/1:15:7,8:7:252:8:266:-19.7396,0,-18.5135	0/0:321:320,1:320:11429:1:36:0,-93.0323,-1024.89	0/0:292:292,0:292:10401:0:0:0,-87.9008,-936.016	0/1:151:69,82:69:2476:82:2903:-216.044,0,-177.638	0/0:180:178,2:178:6323:2:68:0,-47.7277,-562.707	0/1:346:178,168:178:6312:168:5929:-429.568,0,-464.019	0/1:370:130,238:130:4604:238:8440:-648.469,0,-303.386	0/1:85:38,47:38:1331:47:1632:-121.578,0,-94.5015	0/0:240:240,0:240:8520:0:0:0,-72.2472,-766.805	0/1:246:120,126:120:4264:126:4455:-327.069,0,-309.888	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/1:122:62,60:62:2212:60:2131:-155.332,0,-162.619	0/1:159:80,79:80:2838:79:2802:-204.556,0,-207.792	0/0:371:371,0:371:13185:0:0:0,-111.682,-1186.39	0/1:391:197,194:197:7068:194:6920:-505.165,0,-518.476	0/1:200:109,91:109:3831:91:3216:-229.456,0,-284.782	0/0:337:333,4:333:11848:4:144:0,-88.1335,-1052.87	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:342:342,0:342:12274:0:0:0,-102.952,-1104.49	0/0:269:269,0:269:9619:0:0:0,-80.9771,-865.664	0/0:580:579,1:579:20666:1:36:0,-170.999,-1855.84	0/1:220:107,113:107:3824:113:3960:-290.365,0,-278.131	0/1:145:77,68:77:2743:68:2400:-172.607,0,-203.463	0/0:236:236,0:236:8420:0:0:0,-71.0431,-757.808	0/1:295:156,136:156:5575:136:4838:-347.316,0,-413.613	0/0:108:108,0:108:3851:0:0:0,-32.5112,-346.787	0/0:149:149,0:149:5301:0:0:0,-44.8535,-477.227	0/0:160:159,0:159:5659:0:0:0,-47.8638,-509.074	0/1:117:56,61:56:1995:61:2149:-158.454,0,-144.603	0/1:190:111,77:111:3972:77:2732:-189.206,0,-300.762	0/1:194:69,125:69:2480:125:4438:-341.195,0,-165.053	0/0:240:240,0:240:8560:0:0:0,-72.2472,-770.4	0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chr07	1750250	.	CC	AC,GC	92200.5	PASS	AB=0.481308,0.516745;ABP=10.8032,9.26428;AC=135,51;AF=0.725806,0.274194;AN=186;AO=3158,1329;CIGAR=1X1M,1X1M;DP=4495;DPB=4495;DPRA=0,1.15437;EPP=6860.52,2880.22;EPPR=5.18177;GTI=0;LEN=1,1;MEANALT=1.6129,2.01887;MQM=59.9693,59.9865;MQMR=60;NS=93;NUMALT=2;ODDS=1.63153;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=109311,47322;QR=28;RO=1;RPL=0,0;RPP=6860.52,2888.9;RPPR=5.18177;RPR=3158,1329;RUN=1,1;SAF=3158,1328;SAP=6860.52,2880.22;SAR=0,1;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,17,7:0:0:17,7:593,252:-69.1424,-20.9217,-15.8042,-48.5772,0,-46.47	1/2:44:0,22,22:0:0:22,22:761,792:-126.814,-64.983,-58.3604,-62.1842,0,-55.5615	1/2:55:0,28,27:0:0:28,27:962,964:-157.048,-78.949,-70.5202,-78.4497,0,-70.3219	1/2:84:0,45,39:0:0:45,39:1574,1374:-240.264,-112.214,-98.6681,-128.4,0,-116.66	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:15:0,6,9:0:0:6,9:216,320:-44.0594,-26.4331,-24.6269,-17.9843,0,-15.2751	1/2:68:0,43,25:0:0:43,25:1488,892:-193.983,-73.0739,-60.1296,-121.262,0,-113.736	1/1:37:0,36,0:0:0:36,0:1254,0:-112.799,-10.8371,0,-112.799,-10.8371,-112.799	1/2:47:0,24,23:0:0:24,23:813,824:-133.193,-67.5596,-60.3349,-65.9815,0,-59.0578	1/1:53:0,53,0:0:0:53,0:1816,0:-163.713,-15.9546,0,-163.713,-15.9546,-163.713	1/2:104:0,46,58:0:0:46,58:1626,2035:-298.384,-165.958,-152.111,-132.778,0,-115.318	1/1:93:0,93,0:0:0:93,0:3158,0:-284.437,-27.9958,0,-284.437,-27.9958,-284.437	1/2:70:0,37,33:0:0:37,33:1313,1171:-202.74,-95.7627,-84.6246,-107.332,0,-97.3976	1/2:86:0,43,43:0:0:43,43:1537,1548:-251.989,-126.669,-113.724,-125.679,0,-112.735	1/2:52:0,34,18:0:0:34,18:1111,648:-142.926,-53.2333,-42.9983,-90.0412,0,-84.6227	1/2:56:0,23,33:0:0:23,33:790,1169:-159.722,-95.5813,-88.6576,-64.4888,0,-54.5548	1/2:37:0,14,23:0:0:14,23:474,824:-105.979,-67.5596,-63.3452,-38.7653,0,-31.8416	1/1:28:0,27,1:0:0:27,1:938,36:-84.3699,-8.12781,0,-81.432,-4.83057,-81.131	1/2:42:0,25,17:0:0:25,17:843,604:-117.875,-49.5731,-42.0473,-68.6498,0,-63.5323	1/1:121:0,120,0:0:0:120,0:4127,0:-371.313,-36.1236,0,-371.313,-36.1236,-371.313	1/2:4:0,3,1:0:0:3,1:104,36:-11.7405,-3.29724,-2.39415,-8.79971,0,-8.49868	1/2:55:0,17,38:0:0:17,38:589,1334:-156.785,-108.917,-103.799,-48.2158,0,-36.7766	1/2:26:0,8,18:0:0:8,18:254,648:-73.6636,-53.2333,-50.8251,-20.7607,0,-15.3421	1/2:19:0,9,10:0:0:9,10:320,360:-55.8096,-29.734,-27.0247,-26.4331,0,-23.4228	1/1:81:0,81,0:0:0:81,0:2775,0:-249.986,-24.3834,0,-249.986,-24.3834,-249.986	1/1:85:0,85,0:0:0:85,0:2935,0:-264.378,-25.5876,0,-264.378,-25.5876,-264.378	1/1:27:0,27,0:0:0:27,0:949,0:-85.7228,-8.12781,0,-85.7228,-8.12781,-85.7228	1/2:86:1,37,48:1:28:37,48:1286,1705:-241.033,-136.786,-127.865,-102.4,0,-90.1674	1/1:38:0,38,0:0:0:38,0:1330,0:-119.996,-11.4391,0,-119.996,-11.4391,-119.996	1/1:35:0,35,0:0:0:35,0:1204,0:-108.658,-10.5361,0,-108.658,-10.5361,-108.658	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:9:0,2,7:0:0:2,7:57,252:-25.4314,-20.9217,-20.3197,-4.81125,0,-2.70404	1/2:150:0,66,84:0:0:66,84:2268,3016:-430.541,-246.384,-226.516,-184.508,0,-159.221	1/2:30:0,12,18:0:0:12,18:417,610:-83.7011,-49.7971,-46.1848,-34.2479,0,-28.8293	1/2:49:0,12,37:0:0:12,37:432,1326:-143.754,-108.504,-104.892,-35.6088,0,-24.4707	.:.:.:.:.:.:.:.	1/2:65:0,28,37:0:0:28,37:965,1286:-183.28,-104.899,-96.4698,-78.7275,0,-67.5894	1/2:35:0,11,24:0:0:11,24:377,864:-101.456,-70.8578,-67.5465,-30.9466,0,-23.7219	1/2:55:0,29,26:0:0:29,26:942,928:-152.007,-76.0115,-67.2816,-76.3373,0,-68.5106	1/2:65:0,30,35:0:0:30,35:1065,1260:-189.941,-103.169,-94.1385,-87.1285,0,-76.5924	1/2:89:0,49,40:0:0:49,40:1684,1432:-253.873,-117.136,-102.386,-137.088,0,-125.046	1/1:37:0,37,0:0:0:37,0:1268,0:-114.412,-11.1381,0,-114.412,-11.1381,-114.412	1/1:77:0,77,0:0:0:77,0:2634,0:-237.253,-23.1793,0,-237.253,-23.1793,-237.253	1/1:46:0,46,0:0:0:46,0:1596,0:-143.921,-13.8474,0,-143.921,-13.8474,-143.921	1/2:25:0,11,14:0:0:11,14:392,489:-72.0801,-40.1245,-36.8131,-32.3087,0,-28.0943	1/2:37:0,17,20:0:0:17,20:589,720:-106.971,-59.1082,-53.9907,-48.2158,0,-42.1952	1/2:33:0,24,9:0:0:24,9:845,324:-95.5813,-26.7966,-19.5719,-69.1424,0,-66.4331	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:56:0,56,0:0:0:56,0:1917,0:-172.798,-16.8577,0,-172.798,-16.8577,-172.798	1/1:16:0,16,0:0:0:16,0:549,0:-49.7324,-4.81648,0,-49.7324,-4.81648,-49.7324	1/1:7:0,7,0:0:0:7,0:237,0:-21.6591,-2.10721,0,-21.6591,-2.10721,-21.6591	1/2:43:0,18,25:0:0:18,25:610,900:-123.245,-73.7953,-68.3767,-49.7971,0,-42.2714	1/2:10:0,6,4:0:0:6,4:216,144:-29.734,-12.1095,-10.3033,-17.9843,0,-16.7802	1/2:4:0,2,2:0:0:2,2:72,68:-11.7405,-5.85565,-5.25359,-6.23466,0,-5.6326	1/1:13:0,13,0:0:0:13,0:426,0: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chr07	1860240	.	T	C	366956	PASS	AB=0.544683;ABP=170.479;AC=137;AF=0.728723;AN=188;AO=13946;CIGAR=1X;DP=18372;DPB=18372;DPRA=0;EPP=30234.3;EPPR=9561.85;GTI=1;LEN=1;MEANALT=1.11702;MQM=59.9953;MQMR=59.9982;NS=94;NUMALT=1;ODDS=2.83798;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=488230;QR=156846;RO=4414;RPL=6792;RPP=23.4146;RPPR=44.3834;RPR=7154;RUN=1;SAF=6798;SAP=22.0843;SAR=7148;SRF=2355;SRP=46.1131;SRR=2059;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:149:54,95:54:1936:95:3305:-252.816,0,-129.663	0/1:151:76,75:76:2698:75:2567:-185.822,0,-197.609	0/1:286:130,156:130:4590:156:5457:-405.172,0,-327.173	0/1:334:170,164:170:6075:164:5802:-421.755,0,-446.309	1/1:226:0,226:0:0:226:7990:-719.086,-68.0328,0	1/1:108:0,108:0:0:108:3775:-339.952,-32.5112,0	0/1:120:57,63:57:2036:63:2219:-163.851,0,-147.389	0/1:266:116,150:116:4145:150:5212:-389.154,0,-293.158	1/1:382:1,381:1:32:381:13290:-1192.74,-111.794,0	0/1:222:95,127:95:3404:127:4447:-333.578,0,-239.746	1/1:147:3,144:3:108:144:5023:-442.151,-34.1762,0	0/1:336:165,171:165:5873:171:5980:-437.171,0,-427.537	1/1:239:1,238:1:36:238:8324:-745.591,-68.3479,0	0/1:159:78,81:78:2764:81:2804:-204.734,0,-201.137	0/1:208:93,114:93:3306:114:3994:-296.979,0,-235.086	0/1:146:69,77:69:2452:77:2659:-195.605,0,-176.985	0/1:112:54,58:54:1919:58:2023:-148.626,0,-139.271	0/1:97:41,56:41:1441:56:1958:-147.295,0,-100.784	1/1:108:0,108:0:0:108:3739:-336.715,-32.5112,0	0/1:257:114,143:114:4056:143:5072:-379.264,0,-287.862	1/1:431:2,429:2:68:429:15119:-1354,-123.286,0	0/1:130:66,64:66:2359:64:2226:-161.468,0,-173.434	0/1:220:78,142:78:2769:142:5013:-385.095,0,-183.224	0/1:79:23,56:23:824:56:1968:-153.61,0,-50.7019	0/1:118:65,53:65:2298:53:1849:-131.166,0,-171.559	1/1:646:2,644:2:68:644:22618:-2028.62,-188.008,0	1/1:567:2,565:2:68:565:19823:-1777.18,-164.226,0	1/1:94:1,93:1:36:93:3256:-289.663,-24.6985,0	0/1:402:167,235:167:5971:235:8211:-618.011,0,-416.483	1/1:226:0,226:0:0:226:7909:-711.854,-68.0328,0	1/1:225:0,225:0:0:225:7890:-710.138,-67.7318,0	1/1:13:1,12:1:36:12:424:-34.8981,-0.315115,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:498:243,255:243:8655:255:8906:-651.631,0,-629.034	0/1:110:45,65:45:1597:65:2316:-175.588,0,-110.905	0/1:163:90,73:90:3220:73:2534:-179.246,0,-240.955	1/1:1:0,1:0:0:1:28:-2.79973,-0.30103,0	0/1:228:101,127:101:3592:127:4446:-331.681,0,-254.851	0/1:91:38,53:38:1355:53:1871:-141.275,0,-94.856	0/1:215:68,147:68:2423:147:5140:-398.025,0,-153.604	0/1:333:161,172:161:5652:172:5984:-438.437,0,-408.566	0/1:173:73,100:73:2573:100:3484:-261.696,0,-179.741	1/1:235:0,235:0:0:235:8237:-741.357,-70.7421,0	1/1:187:0,187:0:0:187:6605:-594.539,-56.2926,0	1/1:253:2,251:2:72:251:8801:-785.257,-69.3239,0	0/1:119:48,71:48:1711:71:2513:-190.6,0,-118.452	0/1:184:92,92:92:3274:92:3235:-235.986,0,-239.491	0/1:86:57,28:57:2023:28:978:-62.4235,0,-156.434	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:191:0,191:0:0:191:6750:-607.582,-57.4967,0	1/1:176:0,175:0:0:175:6125:-551.148,-52.6803,0	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:324:129,195:129:4620:195:6851:-519.135,0,-318.43	0/1:87:26,60:26:936:60:2050:-158.516,0,-58.3111	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:23:0,23:0:0:23:811:-73.31,-6.92369,0	1/1:242:0,242:0:0:242:8459:-761.334,-72.8493,0	1/1:237:0,237:0:0:237:8273:-744.602,-71.3441,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	1/1:353:1,351:1:36:351:12420:-1114.05,-102.724,0	1/1:287:1,286:1:32:286:10037:-900.087,-83.1963,0	0/1:152:52,99:52:1838:99:3466:-266.338,0,-119.884	1/1:176:0,175:0:0:175:6200:-557.84,-52.6803,0	0/1:395:171,224:171:6057:224:7867:-589.163,0,-426.333	0/1:189:106,83:106:3796:83:2914:-205.599,0,-284.943	0/1:83:35,48:35:1240:48:1648:-123.616,0,-86.919	1/1:109:0,109:0:0:109:3825:-344.45,-32.8123,0	0/1:103:41,62:41:1450:62:2153:-163.028,0,-99.7883	1/1:21:0,21:0:0:21:723:-65.3855,-6.32163,0	0/1:124:36,88:36:1266:88:3078:-239.922,0,-76.9134	0/1:216:78,137:78:2792:137:4814:-368.341,0,-186.439	1/1:354:0,354:0:0:354:12277:-1104.81,-106.565,0	0/1:268:90,178:90:3228:178:6280:-484.627,0,-210.066	0/1:262:124,138:124:4396:138:4799:-353.205,0,-316.944	1/1:215:2,213:2:72:213:7435:-662.379,-57.8847,0	1/1:26:0,26:0:0:26:916:-82.7565,-7.82678,0	1/1:244:0,244:0:0:244:8598:-773.824,-73.4513,0	1/1:231:0,229:0:0:229:8064:-725.429,-68.9359,0	1/1:334:2,331:2:72:331:11691:-1045.28,-93.6662,0	0/1:155:79,76:79:2797:76:2643:-191.458,0,-205.31	0/1:186:99,86:99:3505:86:2977:-212.113,0,-259.609	1/1:223:0,223:0:0:223:7754:-697.91,-67.1297,0	0/1:445:223,222:223:7860:222:7683:-557.573,0,-573.481	1/1:65:0,65:0:0:65:2233:-201.232,-19.567,0	1/1:221:0,221:0:0:221:7619:-685.774,-66.5276,0	1/1:211:0,211:0:0:211:7352:-661.75,-63.5173,0	0/1:111:63,48:63:2235:48:1663:-116.542,0,-167.999	0/1:202:100,102:100:3564:102:3551:-258.995,0,-260.161	0/1:313:189,124:189:6643:124:4332:-295.841,0,-503.736	1/1:293:1,292:1:32:292:10258:-919.965,-85.0025,0	1/1:344:1,343:1:36:343:11830:-1061.01,-99.956,0
chr07	1860292	.	A	G	34053.4	PASS	AB=0.427688;ABP=230.694;AC=50;AF=0.268817;AN=186;AO=2152;CIGAR=1X;DP=9425;DPB=9425;DPRA=1.27815;EPP=4676.02;EPPR=15785.3;GTI=2;LEN=1;MEANALT=1.05263;MQM=59.9772;MQMR=59.9889;NS=93;NUMALT=1;ODDS=0.876462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77160;QR=260118;RO=7268;RPL=2152;RPP=4676.02;RPPR=15785.3;RPR=0;RUN=1;SAF=0;SAP=4676.02;SAR=2152;SRF=0;SRP=15785.3;SRR=7268;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:58,25:58:2069:25:896:-55.9749,0,-161.493	0/1:75:37,38:37:1324:38:1360:-100.123,0,-96.8848	0/1:100:63,37:63:2260:37:1313:-88.3667,0,-173.56	0/1:149:90,59:90:3232:59:2120:-146.215,0,-246.248	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:56:56,0:56:1970:0:0:0,-16.8577,-177.571	0/1:74:44,30:44:1576:30:1076:-74.8766,0,-119.855	0/1:190:109,81:109:3908:81:2892:-203.321,0,-294.717	0/0:237:236,0:236:8416:0:0:0,-71.0431,-757.23	0/1:129:80,49:80:2876:49:1748:-118.771,0,-220.243	0/0:68:67,1:67:2396:1:36:0,-16.8718,-212.108	0/1:149:73,76:73:2628:76:2732:-201.269,0,-191.913	0/0:122:121,1:121:4331:1:36:0,-33.1274,-386.367	0/1:72:42,30:42:1508:30:1076:-75.4787,0,-114.34	0/1:99:50,49:50:1792:49:1760:-128.882,0,-131.756	0/1:67:35,32:35:1260:32:1152:-83.8211,0,-93.5365	0/1:54:29,25:29:1044:25:896:-64.7047,0,-78.0192	0/1:47:25,22:25:900:22:792:-57.4573,0,-67.1726	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:116:65,51:65:2324:51:1832:-130.241,0,-174.501	0/0:210:209,1:209:7458:1:36:0,-59.618,-667.665	0/1:71:42,29:42:1489:29:1040:-72.5412,0,-112.929	0/1:118:85,33:85:3033:33:1184:-71.3468,0,-237.677	0/1:20:18,2:18:648:2:72:-0.816123,0,-52.6313	0/1:69:24,45:24:864:45:1612:-124.599,0,-57.3115	0/0:414:412,2:412:14765:2:72:0,-117.79,-1321.48	0/0:219:218,1:218:7832:1:36:0,-62.3273,-701.306	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:185:132,53:132:4716:53:1908:-115.75,0,-368.91	0/0:119:119,0:119:4253:0:0:0,-35.8226,-382.948	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:11:11,0:11:373:0:0:0,-3.31133,-33.8952	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:235:118,117:118:4244:117:4191:-306.629,0,-311.395	0/1:67:42,25:42:1504:25:900:-61.152,0,-115.486	0/1:83:49,34:49:1760:34:1220:-85.1213,0,-133.698	.:.:.:.:.:.:.:.	0/1:145:108,37:108:3857:37:1332:-76.533,0,-303.675	0/1:37:19,18:19:684:18:648:-47.5138,0,-50.7522	0/1:117:69,48:69:2431:48:1728:-120.585,0,-183.821	0/1:234:121,112:121:4317:112:4024:-291.847,0,-318.206	0/1:87:49,38:49:1760:38:1364:-96.8711,0,-132.494	0/0:143:143,0:143:5124:0:0:0,-43.0473,-461.302	0/0:112:111,0:111:3927:0:0:0,-33.4143,-353.41	0/0:132:132,0:132:4721:0:0:0,-39.736,-425.034	0/1:61:42,19:42:1512:19:680:-43.1663,0,-118.012	0/1:92:57,34:57:2040:34:1220:-82.4988,0,-156.266	0/1:21:7,14:7:252:14:504:-39.3765,0,-16.7073	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:92:91,1:91:3260:1:36:0,-24.0965,-290.022	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.821	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:142:83,59:83:2984:59:2120:-148.322,0,-226.045	0/1:40:31,9:31:1097:9:324:-17.4647,0,-86.9968	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0178	0/0:161:161,0:161:5788:0:0:0,-48.4658,-521.031	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.386	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:188:188,0:188:6721:0:0:0,-56.5936,-604.964	0/0:157:157,0:157:5590:0:0:0,-47.2617,-503.223	0/1:53:41,12:41:1472:12:428:-22.9042,0,-116.822	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/1:289:164,124:164:5862:124:4428:-311.785,0,-440.781	0/1:104:44,60:44:1576:60:2155:-162.91,0,-110.824	0/1:42:30,12:30:1080:12:432:-26.5779,0,-84.87	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:52:33,19:33:1169:19:684:-46.2368,0,-89.8617	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:67:41,26:41:1457:26:928:-63.6601,0,-111.255	0/1:100:68,32:68:2432:32:1140:-72.8062,0,-189.033	0/0:164:164,0:164:5876:0:0:0,-49.3689,-528.95	0/1:135:97,38:97:3465:38:1360:-82.0615,0,-271.422	0/1:140:74,66:74:2644:66:2372:-171.585,0,-196.063	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:108:108,0:108:3884:0:0:0,-32.5112,-349.753	0/0:139:139,0:139:4965:0:0:0,-41.8432,-446.998	0/1:83:38,45:38:1360:45:1594:-118.763,0,-97.7151	0/1:84:37,47:37:1332:47:1688:-126.92,0,-94.8959	0/0:119:119,0:119:4280:0:0:0,-35.8226,-385.376	0/1:251:129,122:129:4632:122:4384:-319.173,0,-341.483	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.269	0/0:107:107,0:107:3835:0:0:0,-32.2102,-345.345	0/1:53:30,23:30:1080:23:815:-57.7154,0,-81.5587	0/1:85:44,41:44:1580:41:1472:-107.189,0,-116.904	0/1:225:86,139:86:3076:139:4992:-381.694,0,-209.337	0/0:145:145,0:145:5192:0:0:0,-43.6493,-467.419	0/0:170:169,1:169:6053:1:36:0,-47.5768,-541.273
chr07	1884701	.	C	T	37473.5	PASS	AB=0.528;ABP=24.2907;AC=51;AF=0.277174;AN=184;AO=1654;CIGAR=1X;DP=5017;DPB=5017;DPRA=1.39214;EPP=127.554;EPPR=258.041;GTI=4;LEN=1;MEANALT=1.04;MQM=59.9758;MQMR=59.9762;NS=92;NUMALT=1;ODDS=1.60139;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58746;QR=119253;RO=3358;RPL=1654;RPP=3594.63;RPPR=7268.78;RPR=0;RUN=1;SAF=673;SAP=127.554;SAR=981;SRF=1362;SRP=262.938;SRR=1996;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:8,9:8:284:9:309:-22.665,0,-20.4266	0/1:50:21,28:21:743:28:1004:-75.5656,0,-52.0833	0/1:76:34,42:34:1192:42:1477:-110.344,0,-84.7041	0/1:64:26,38:26:932:38:1341:-101.722,0,-64.9329	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:51:25,26:25:896:26:924:-68.1251,0,-65.6078	0/1:52:23,29:23:824:29:1015:-75.9702,0,-58.8298	0/0:49:47,0:47:1661:0:0:0,-14.1484,-149.416	0/1:46:15,31:15:536:31:1112:-86.544,0,-34.7274	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.286	0/1:132:72,60:72:2532:60:2106:-150.073,0,-188.395	0/0:89:89,0:89:3161:0:0:0,-26.7917,-284.715	0/1:128:65,63:65:2319:63:2264:-165.49,0,-170.438	0/1:78:40,38:40:1416:38:1356:-98.8601,0,-104.257	0/1:85:41,44:41:1460:44:1534:-112.76,0,-106.108	0/1:124:62,62:62:2198:62:2220:-162.737,0,-160.757	0/1:72:40,32:40:1436:32:1152:-82.316,0,-107.864	0/0:69:68,0:68:2421:0:0:0,-20.47,-217.785	0/1:78:38,40:38:1348:40:1440:-106.417,0,-98.1399	0/0:60:60,0:60:2147:0:0:0,-18.0618,-193.497	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/1:41:20,21:20:707:21:752:-55.664,0,-51.6123	0/1:36:13,23:13:468:23:813:-62.652,0,-31.6226	0/0:86:86,0:86:3034:0:0:0,-25.8886,-273.289	0/0:73:73,0:73:2572:0:0:0,-21.9752,-231.729	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/1:57:30,27:30:1068:27:934:-67.2104,0,-79.2734	0/0:20:20,0:20:688:0:0:0,-6.0206,-62.2375	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:194:88,106:88:3106:106:3763:-280.472,0,-221.369	0/1:27:11,16:11:396:16:576:-44.0472,0,-27.8549	0/1:86:48,38:48:1694:38:1342:-95.19,0,-126.854	.:.:.:.:.:.:.:.	0/1:55:24,31:24:864:31:1104:-83.114,0,-61.5259	0/1:47:18,29:18:635:29:1036:-79.4055,0,-43.3286	0/1:53:21,32:21:739:32:1139:-86.8638,0,-50.0978	0/1:61:25,36:25:864:36:1283:-97.4098,0,-59.7095	0/1:82:42,40:42:1484:40:1407:-102.242,0,-109.17	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.181	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/0:68:68,0:68:2417:0:0:0,-20.47,-217.785	0/1:28:10,18:10:351:18:633:-48.8662,0,-23.4978	0/1:54:27,27:27:964:27:927:-67.4833,0,-70.8212	0/1:54:27,27:27:947:27:972:-71.5423,0,-69.2881	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:42:42,0:42:1483:0:0:0,-12.6433,-133.764	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:53:26,27:26:928:27:959:-70.6708,0,-67.8837	0/1:21:9,12:9:320:12:428:-32.5372,0,-22.8207	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:55:55,0:55:1956:0:0:0,-16.5566,-176.316	0/1:30:12,18:12:413:18:644:-49.2597,0,-28.4669	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/1:59:30,29:30:1055:29:1017:-74.0793,0,-77.2715	0/1:43:15,28:15:521:28:1000:-77.3711,0,-34.272	0/1:57:30,27:30:1076:27:972:-70.6392,0,-79.9941	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/1:129:63,66:63:2260:66:2347:-172.656,0,-164.512	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:22:10,12:10:356:12:417:-31.2386,0,-25.7586	0/1:32:14,18:14:492:18:644:-48.6576,0,-34.9794	0/0:50:50,0:50:1775:0:0:0,-15.0515,-160.032	0/1:49:27,22:27:964:22:788:-56.4943,0,-72.3264	0/1:50:22,28:22:788:28:985:-73.91,0,-56.1933	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.108	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:65:65,0:65:2295:0:0:0,-19.5669,-206.812	0/1:101:49,52:49:1755:52:1868:-137.995,0,-127.829	0/1:89:40,49:40:1407:49:1735:-129.64,0,-100.135	0/0:97:97,0:97:3438:0:0:0,-29.1999,-309.635	0/1:169:84,85:84:2992:85:3022:-221.337,0,-218.639	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.272	0/0:80:80,0:80:2851:0:0:0,-24.0824,-256.828	0/0:97:97,0:97:3454:0:0:0,-29.1999,-311.073	0/1:82:43,39:43:1539:39:1396:-101.255,0,-114.118	0/1:99:49,50:49:1733:50:1775:-130.23,0,-126.451	0/1:67:17,50:17:608:50:1774:-139.773,0,-34.883	0/0:32:32,0:32:1119:0:0:0,-9.63296,-101.017	0/0:124:124,0:124:4411:0:0:0,-37.3277,-397.165
chr07	1885579	.	C	G	62666.8	PASS	AB=0.517309;ABP=20.3746;AC=52;AF=0.276596;AN=188;AO=3460;CIGAR=1X;DP=11996;DPB=11996;DPRA=1.15212;EPP=6697.39;EPPR=18315.6;GTI=0;LEN=1;MEANALT=1.06897;MQM=59.9139;MQMR=59.9801;NS=94;NUMALT=1;ODDS=1.88086;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123382;QR=302676;RO=8529;RPL=99;RPP=6681.01;RPPR=18324.3;RPR=3361;RUN=1;SAF=3458;SAP=7498.94;SAR=2;SRF=8528;SRP=18514.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:42,30:42:1490:30:1042:-72.4113,0,-112.719	0/1:241:115,126:115:4104:126:4493:-331.989,0,-296.996	0/1:224:118,106:118:4181:106:3794:-274.227,0,-309.044	0/1:262:121,141:121:4270:141:5039:-374.73,0,-304.674	0/0:153:153,0:153:5460:0:0:0,-46.0576,-491.53	0/0:97:97,0:97:3458:0:0:0,-29.1999,-311.432	0/1:198:93,105:93:3290:105:3719:-275.306,0,-236.717	0/1:213:110,103:110:3910:103:3628:-262.585,0,-287.975	0/0:159:159,0:159:5645:0:0:0,-47.8638,-508.174	0/1:126:65,61:65:2279:61:2178:-158.356,0,-167.44	0/0:56:56,0:56:1954:0:0:0,-16.8577,-176.132	0/1:67:22,45:22:771:45:1584:-122.677,0,-49.5413	0/0:73:73,0:73:2566:0:0:0,-21.9752,-231.188	0/1:66:24,42:24:837:42:1504:-115.68,0,-55.7777	0/1:79:36,43:36:1288:43:1529:-114.12,0,-92.4422	0/1:57:24,33:24:852:33:1179:-89.2552,0,-59.8417	0/1:65:35,30:35:1235:30:1067:-76.7743,0,-91.8865	0/1:39:18,21:18:644:21:756:-56.6271,0,-46.5504	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.393	0/1:332:166,166:166:5913:166:5948:-435.485,0,-432.335	0/0:213:213,0:213:7547:0:0:0,-64.1194,-679.273	0/1:138:39,99:39:1372:99:3540:-277.264,0,-82.2364	0/1:124:52,72:52:1847:72:2592:-196.172,0,-129.182	0/1:151:75,76:75:2634:76:2692:-197.06,0,-191.853	0/1:86:51,35:51:1799:35:1229:-85.0227,0,-136.303	0/0:348:348,0:348:12252:0:0:0,-104.758,-1101.44	0/0:391:391,0:391:13868:0:0:0,-117.703,-1247.91	0/0:31:31,0:31:1099:0:0:0,-9.33193,-99.2195	0/1:507:254,253:254:9044:253:9047:-661.568,0,-661.32	0/0:136:136,0:136:4847:0:0:0,-40.9401,-436.386	0/0:130:130,0:130:4617:0:0:0,-39.1339,-415.696	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/1:180:92,88:92:3288:88:3148:-229.36,0,-241.955	0/1:249:109,139:109:3866:139:4963:-371.805,0,-273.122	0/1:65:29,36:29:1031:36:1277:-95.6642,0,-73.5357	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/1:179:79,100:79:2803:100:3584:-268.882,0,-198.626	0/1:33:20,13:20:712:13:468:-32.5257,0,-54.4727	0/1:180:74,106:74:2627:106:3770:-285.295,0,-182.492	0/1:86:40,46:40:1440:46:1644:-122.36,0,-104.009	0/1:66:39,27:39:1382:27:956:-66.4878,0,-104.809	0/0:145:144,0:144:5114:0:0:0,-43.3483,-460.156	0/0:183:181,2:181:6454:2:72:0,-48.2518,-574.112	0/0:225:224,0:224:7972:0:0:0,-67.4307,-717.286	0/1:179:74,104:74:2620:104:3694:-277.53,0,-182.103	0/1:169:82,87:82:2900:87:3097:-228.083,0,-210.361	0/1:252:127,125:127:4526:125:4475:-327.059,0,-331.649	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:236:235,1:235:8370:1:36:0,-67.4448,-749.712	0/0:36:35,1:35:1235:1:36:0,-7.2388,-107.855	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/1:232:110,122:110:3903:122:4339:-320.845,0,-281.625	0/1:86:39,47:39:1371:47:1657:-123.511,0,-97.7992	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9338	0/0:112:112,0:112:3996:0:0:0,-33.7154,-358.886	0/0:98:98,0:98:3502:0:0:0,-29.5009,-315.39	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/0:208:207,0:207:7371:0:0:0,-62.3132,-663.08	0/0:277:275,2:275:9738:2:72:0,-76.5486,-869.542	0/1:107:59,48:59:2080:48:1715:-122.423,0,-155.261	0/0:172:172,0:172:6070:0:0:0,-51.7772,-546.407	0/1:208:106,102:106:3763:102:3656:-266.629,0,-276.258	0/1:176:50,125:50:1780:125:4475:-350.033,0,-107.595	0/1:24:7,17:7:252:17:612:-48.178,0,-15.8042	0/0:123:122,1:122:4347:1:36:0,-33.4284,-387.808	0/1:82:44,38:44:1560:38:1353:-97.2271,0,-116.007	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:111:67,44:67:2365:44:1557:-107.005,0,-179.693	0/1:64:35,29:35:1236:29:1029:-73.4972,0,-92.2783	0/0:229:229,0:229:8069:0:0:0,-68.9359,-726.236	0/1:247:143,104:143:5115:104:3732:-261.709,0,-386.138	0/1:118:63,54:63:2232:54:1928:-138.216,0,-165.478	0/0:173:173,0:173:6163:0:0:0,-52.0782,-554.769	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:209:209,0:209:7401:0:0:0,-62.9153,-666.143	0/0:153:153,0:153:5445:0:0:0,-46.0576,-490.181	0/0:268:267,1:267:9480:1:36:0,-77.0778,-849.567	0/1:123:66,57:66:2322:57:2026:-145.586,0,-172.211	0/1:51:23,28:23:811:28:991:-74.1372,0,-57.9574	0/0:79:79,0:79:2791:0:0:0,-23.7814,-251.429	0/1:139:68,71:68:2440:71:2524:-185.567,0,-178.012	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.038	0/0:82:82,0:82:2914:0:0:0,-24.6845,-262.493	0/1:43:28,15:28:1004:15:540:-35.9922,0,-77.7316	0/1:70:35,35:35:1243:35:1260:-92.6334,0,-91.1018	0/1:58:22,36:22:788:36:1276:-97.6833,0,-53.7851	0/0:181:181,0:181:6409:0:0:0,-54.4864,-576.906	0/0:104:104,0:104:3694:0:0:0,-31.3071,-332.661
chr07	1885632	.	A	G	184456	PASS	AB=0.498817;ABP=3.08735;AC=134;AF=0.72043;AN=186;AO=8669;CIGAR=1X;DP=11867;DPB=11867;DPRA=128.978;EPP=17816.5;EPPR=6804.76;GTI=2;LEN=1;MEANALT=1.02174;MQM=54.0897;MQMR=59.9912;NS=93;NUMALT=1;ODDS=2.28236;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309231;QR=114414;RO=3196;RPL=8551;RPP=17816.5;RPPR=6804.76;RPR=118;RUN=1;SAF=0;SAP=18827.5;SAR=8669;SRF=0;SRP=6943.04;SRR=3196;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:9,9:9:324:9:316:-23.1123,0,-24.0873	0/1:192:102,90:102:3633:90:3206:-229.757,0,-269.377	0/1:125:53,72:53:1900:72:2542:-190.825,0,-133.649	0/1:368:202,166:202:7236:166:5928:-421.718,0,-540.428	1/1:54:0,54:0:0:54:1936:-173.876,-16.2556,0	1/1:114:0,114:0:0:114:4075:-365.272,-34.3174,0	0/1:249:169,80:169:6052:80:2851:-180.728,0,-469.824	0/1:248:96,152:96:3444:152:5409:-408.673,0,-235.517	1/1:114:0,114:0:0:114:4051:-363.116,-34.3174,0	0/1:137:74,63:74:2648:63:2229:-159.467,0,-197.325	1/1:72:0,72:0:0:72:2567:-230.447,-21.6742,0	0/1:101:58,43:58:2072:43:1548:-108.356,0,-156.347	1/1:77:0,77:0:0:77:2751:-245.996,-23.1793,0	0/1:78:35,43:35:1256:43:1531:-114.4,0,-89.8649	0/1:104:50,54:50:1800:54:1944:-143.445,0,-130.975	0/1:65:35,30:35:1260:30:1080:-77.6884,0,-94.1385	0/1:94:46,48:46:1644:48:1724:-126.323,0,-119.952	0/1:91:39,52:39:1404:52:1859:-139.558,0,-99.2655	1/1:51:0,51:0:0:51:1822:-163.505,-15.3525,0	0/1:262:127,135:127:4539:135:4844:-356.789,0,-329.807	1/1:191:2,189:2:72:189:6734:-596.841,-50.66,0	0/1:94:56,38:56:2000:38:1355:-93.8093,0,-151.977	0/1:83:44,39:44:1571:39:1396:-100.14,0,-116.695	0/1:59:33,26:33:1180:26:932:-66.3089,0,-88.7473	0/1:88:29,58:29:1044:58:2054:-157.741,0,-67.7259	1/1:454:4,450:4:140:450:16057:-1429.42,-123.723,0	1/1:347:0,347:0:0:347:12387:-1111.94,-104.457,0	1/1:57:0,57:0:0:57:2033:-181.928,-17.1587,0	0/1:498:212,286:212:7592:286:10187:-765.296,0,-533.405	1/1:150:0,150:0:0:150:5337:-478.841,-45.1545,0	1/1:226:3,223:3:108:223:7933:-702.088,-57.9576,0	1/1:3:0,3:0:0:3:104:-9.69137,-0.90309,0	1/1:15:0,15:0:0:15:528:-47.7629,-4.51545,0	.:.:.:.:.:.:.:.	1/1:9:0,9:0:0:9:315:-28.6202,-2.70927,0	0/1:7:5,2:5:180:2:72:-4.72092,0,-14.4449	0/1:263:140,123:140:5015:123:4364:-313.104,0,-372.325	0/1:187:82,105:82:2940:105:3746:-279.145,0,-208.541	0/1:73:37,36:37:1328:36:1287:-93.7276,0,-97.847	1/1:2:0,2:0:0:2:68:-6.45092,-0.60206,0	0/1:170:73,97:73:2616:97:3467:-260.143,0,-184.513	0/1:50:30,20:30:1063:20:711:-49.155,0,-80.9293	0/1:58:28,30:28:1008:30:1060:-78.1108,0,-73.5766	0/1:133:74,59:74:2652:59:2099:-148.865,0,-198.889	0/1:71:39,32:39:1395:32:1132:-80.709,0,-104.475	1/1:83:0,83:0:0:83:2959:-266.319,-24.9855,0	1/1:236:0,236:0:0:236:8419:-753.368,-71.0431,0	1/1:219:1,218:1:36:218:7748:-692.368,-62.3273,0	0/1:121:61,60:61:2192:60:2144:-156.655,0,-161.116	0/1:112:46,66:46:1632:66:2369:-179.248,0,-113.453	0/1:77:40,37:40:1421:37:1316:-95.4933,0,-105.006	1/1:6:0,6:0:0:6:212:-19.412,-1.80618,0	1/1:221:0,220:0:0:220:7837:-700.487,-66.2266,0	1/1:68:0,68:0:0:68:2448:-220.037,-20.47,0	0/1:7:1,6:1:36:6:216:-17.2654,0,-1.49106	0/1:170:84,86:84:2996:86:3063:-223.734,0,-218.698	0/1:67:49,18:49:1756:18:639:-37.6282,0,-138.155	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:9:0,9:0:0:9:324:-29.4976,-2.70927,0	1/1:96:0,96:0:0:96:3442:-309.124,-28.8989,0	1/1:151:0,151:0:0:151:5412:-486.54,-45.4555,0	0/1:4:2,2:2:72:2:72:-5.62767,0,-5.6326	1/1:251:1,250:1:36:250:8892:-794.499,-71.9603,0	1/1:194:4,190:4:144:190:6769:-595.194,-45.0862,0	0/1:93:42,51:42:1500:51:1822:-135.409,0,-107.299	1/1:124:0,124:0:0:124:4409:-396.333,-37.3277,0	0/1:269:129,140:129:4604:140:4999:-368.08,0,-333.549	0/1:116:80,36:80:2839:36:1288:-81.125,0,-220.827	0/1:29:11,18:11:396:18:648:-49.7179,0,-27.2529	1/1:107:0,107:0:0:107:3836:-343.918,-32.2102,0	0/1:100:42,58:42:1508:58:2070:-156.359,0,-105.912	1/1:29:0,29:0:0:29:1036:-93.31,-8.72987,0	0/1:132:62,70:62:2216:70:2499:-184.248,0,-159.969	0/1:89:40,49:40:1432:49:1758:-131.181,0,-102.386	1/1:300:0,300:0:0:300:10647:-955.794,-90.309,0	0/1:230:108,122:108:3884:122:4347:-320.952,0,-280.516	0/1:149:75,74:75:2676:74:2664:-194.371,0,-196.232	1/1:166:0,166:0:0:166:5929:-531.576,-49.971,0	1/1:7:0,7:0:0:7:248:-22.6215,-2.10721,0	1/1:185:1,184:1:36:184:6583:-585.973,-52.0923,0	1/1:137:2,135:2:72:135:4814:-424.75,-34.4044,0	1/1:396:0,396:0:0:396:14145:-1270.73,-119.208,0	0/1:131:67,64:67:2408:64:2279:-165.425,0,-177.541	0/1:68:40,28:40:1440:28:996:-69.3175,0,-109.428	1/1:101:0,101:0:0:101:3602:-322.682,-30.404,0	0/1:165:76,89:76:2732:89:3167:-234.487,0,-196.452	1/1:45:0,45:0:0:45:1619:-145.44,-13.5464,0	1/1:113:0,113:0:0:113:4027:-360.759,-34.0164,0	1/1:78:0,78:0:0:78:2792:-250.482,-23.4803,0	0/1:50:23,27:23:828:27:972:-72.4752,0,-59.7926	0/1:101:50,51:50:1791:51:1828:-133.679,0,-131.068	0/1:95:72,23:72:2579:23:824:-45.6137,0,-203.761	1/1:150:0,150:0:0:150:5334:-479.148,-45.1545,0	1/1:117:0,117:0:0:117:4197:-377.276,-35.2205,0
chr07	1885734	.	T	G	158545	PASS	AB=0.494141;ABP=4.81693;AC=134;AF=0.712766;AN=188;AO=7723;CIGAR=1X;DP=10811;DPB=10811;DPRA=46.9826;EPP=16773.3;EPPR=6697.66;GTI=0;LEN=1;MEANALT=1.04348;MQM=59.9775;MQMR=59.9906;NS=94;NUMALT=1;ODDS=1.2656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275155;QR=110277;RO=3083;RPL=0;RPP=16773.3;RPPR=6697.66;RPR=7723;RUN=1;SAF=7723;SAP=16773.3;SAR=0;SRF=3083;SRP=6697.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:30,19:30:1080:19:680:-46.7787,0,-82.7628	0/1:171:102,69:102:3660:69:2480:-171.04,0,-278.127	0/1:139:62,77:62:2224:77:2772:-207.877,0,-158.581	0/1:193:94,99:94:3368:99:3527:-259.54,0,-245.237	1/1:103:3,100:3:108:100:3572:-311.613,-20.9309,0	1/1:105:0,105:0:0:105:3744:-337.159,-31.6082,0	0/1:133:68,65:68:2444:65:2294:-166.682,0,-180.178	0/1:204:103,101:103:3687:101:3597:-262.526,0,-270.622	1/1:148:1,147:1:36:147:5215:-465.886,-40.9542,0	0/1:147:77,70:77:2747:70:2498:-180.792,0,-203.221	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	0/1:105:44,61:44:1576:61:2184:-165.218,0,-110.523	1/1:91:0,91:0:0:91:3241:-291.911,-27.3937,0	0/1:107:49,58:49:1752:58:2072:-154.537,0,-125.754	0/1:86:33,53:33:1170:53:1904:-145.749,0,-79.7173	0/1:53:28,25:28:999:25:896:-65.0058,0,-74.2699	0/1:109:64,45:64:2296:45:1608:-112.198,0,-174.089	0/1:66:33,33:33:1188:33:1184:-87.0003,0,-87.3606	1/1:40:0,40:0:0:40:1425:-128.545,-12.0412,0	0/1:224:121,103:121:4321:103:3700:-265.77,0,-321.635	1/1:180:0,180:0:0:180:6425:-578.338,-54.1854,0	0/1:164:111,52:111:3968:52:1857:-117.98,0,-307.327	0/1:109:47,62:47:1684:62:2213:-166.622,0,-119.035	0/1:161:70,91:70:2516:91:3245:-243.804,0,-178.226	0/1:87:41,46:41:1468:46:1637:-121.427,0,-106.226	1/1:391:2,389:2:57:389:13815:-1237.72,-112.289,0	1/1:217:1,216:1:21:216:7669:-688.145,-63.2236,0	1/1:64:0,64:0:0:64:2277:-205.187,-19.2659,0	0/1:233:134,97:134:4789:97:3480:-243.513,0,-361.268	1/1:211:2,209:2:57:209:7454:-665.49,-58.104,0	1/1:133:0,133:0:0:133:4711:-424.15,-40.037,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:2:0,2:0:0:2:69:-6.55254,-0.60206,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:269:126,143:126:4520:143:5084:-376.724,0,-325.99	0/1:249:130,119:130:4668:119:4235:-306.376,0,-345.323	0/1:71:33,38:33:1184:38:1360:-101.326,0,-85.4952	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:188:90,98:90:3216:98:3520:-260.415,0,-233.069	0/1:30:22,8:22:792:8:288:-17.2365,0,-62.5748	0/1:154:82,72:82:2931:72:2569:-185.1,0,-217.666	0/1:124:59,65:59:2120:65:2306:-170.472,0,-153.741	0/1:81:36,45:36:1292:45:1600:-119.905,0,-92.2003	1/1:139:0,139:0:0:139:4912:-442.23,-41.8432,0	1/1:116:1,115:1:36:115:4088:-364.507,-31.3212,0	1/1:162:2,160:2:72:160:5666:-503.222,-41.9301,0	0/1:137:76,61:76:2719:61:2168:-154.146,0,-203.712	0/1:147:49,98:49:1740:98:3465:-267.811,0,-112.633	0/1:230:101,129:101:3608:129:4618:-346.543,0,-255.69	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	1/1:158:1,157:1:36:157:5578:-498.542,-43.9645,0	1/1:59:0,59:0:0:59:2089:-188.278,-17.7608,0	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:101:45,56:45:1612:56:1996:-149.51,0,-114.966	0/1:44:17,27:17:612:27:972:-74.5526,0,-42.1681	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	1/1:138:1,137:1:36:137:4923:-439.62,-37.9439,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:234:0,234:0:0:234:8285:-745.66,-70.441,0	1/1:238:0,238:0:0:238:8438:-759.415,-71.6451,0	0/1:106:54,52:54:1936:52:1842:-134.148,0,-142.607	1/1:66:1,65:1:36:65:2313:-204.831,-16.2697,0	0/1:201:91,110:91:3253:110:3933:-293.625,0,-232.482	0/1:106:66,40:66:2359:40:1425:-96.6363,0,-180.659	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	0/1:113:61,52:61:2187:52:1857:-133.391,0,-163.079	1/1:24:0,24:0:0:24:849:-76.7278,-7.22472,0	0/1:121:52,69:52:1863:69:2449:-184.24,0,-131.524	0/1:95:46,49:46:1632:49:1744:-128.647,0,-118.571	1/1:201:1,200:1:36:200:7115:-636.811,-56.9088,0	0/1:158:92,66:92:3284:66:2353:-164.465,0,-248.218	0/1:129:71,58:71:2533:58:2069:-147.646,0,-189.387	1/1:113:0,113:0:0:113:4022:-362.167,-34.0164,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:139:0,139:0:0:139:4981:-448.436,-41.8432,0	1/1:123:0,123:0:0:123:4377:-393.733,-37.0267,0	1/1:294:0,294:0:0:294:10429:-938.53,-88.5028,0	0/1:124:61,63:61:2170:63:2264:-166.695,0,-158.238	0/1:62:31,31:31:1112:31:1116:-82.0878,0,-81.7275	1/1:98:0,98:0:0:98:3503:-315.479,-29.5009,0	0/1:212:111,100:111:3946:100:3584:-259.038,0,-291.605	1/1:64:0,64:0:0:64:2281:-205.55,-19.2659,0	1/1:103:0,103:0:0:103:3670:-330.501,-31.0061,0	1/1:92:0,92:0:0:92:3295:-296.768,-27.6948,0	0/1:34:15,19:15:540:19:661:-49.5766,0,-38.7015	0/1:99:49,50:49:1760:50:1781:-130.769,0,-128.882	0/1:93:61,32:61:2180:32:1148:-75.634,0,-168.47	1/1:117:0,116:0:0:116:4137:-372.153,-34.9195,0	1/1:128:1,127:1:36:127:4557:-406.695,-34.9336,0
chr07	1885759	.	T	C	162006	PASS	AB=0.496161;ABP=3.79396;AC=134;AF=0.712766;AN=188;AO=7821;CIGAR=1X;DP=10925;DPB=10925;DPRA=47.4783;EPP=16873.4;EPPR=6712.89;GTI=0;LEN=1;MEANALT=1.02174;MQM=59.9737;MQMR=59.9907;NS=94;NUMALT=1;ODDS=0.954055;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279248;QR=111259;RO=3102;RPL=7808;RPP=16873.4;RPPR=6712.89;RPR=13;RUN=1;SAF=7821;SAP=16986.1;SAR=0;SRF=3102;SRP=6738.92;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:29,19:29:1016:19:684:-47.4409,0,-77.2995	0/1:171:102,69:102:3664:69:2472:-170.63,0,-278.486	0/1:140:62,78:62:2208:78:2796:-209.736,0,-156.838	0/1:197:95,102:95:3420:102:3659:-270.209,0,-248.709	1/1:104:3,101:3:108:101:3598:-313.949,-21.232,0	1/1:106:0,106:0:0:106:3773:-339.767,-31.9092,0	0/1:136:67,69:67:2404:69:2472:-181.794,0,-175.676	0/1:205:104,101:104:3719:101:3623:-264.563,0,-273.2	1/1:150:1,149:1:36:149:5329:-476.141,-41.5562,0	0/1:148:76,71:76:2732:71:2512:-181.877,0,-201.669	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	0/1:105:44,61:44:1572:61:2188:-165.578,0,-110.163	1/1:94:0,94:0:0:94:3341:-300.905,-28.2968,0	0/1:111:51,60:51:1828:60:2124:-157.994,0,-131.387	0/1:89:34,55:34:1216:55:1976:-151.323,0,-82.9549	0/1:55:29,26:29:1044:26:936:-68.0028,0,-77.7182	0/1:110:64,46:64:2304:46:1643:-115.045,0,-174.507	0/1:67:33,34:33:1184:34:1219:-89.8476,0,-86.6993	1/1:42:0,42:0:0:42:1503:-135.564,-12.6433,0	0/1:227:118,109:118:4217:109:3894:-282.32,0,-311.375	1/1:183:0,183:0:0:183:6484:-583.637,-55.0885,0	0/1:165:113,52:113:4033:52:1864:-118.369,0,-313.169	0/1:110:50,60:50:1796:60:2155:-161.104,0,-128.809	0/1:162:71,91:71:2548:91:3260:-244.853,0,-180.803	0/1:88:42,46:42:1489:46:1634:-120.857,0,-107.812	1/1:391:1,390:1:36:390:13914:-1248.43,-114.104,0	1/1:219:0,219:0:0:219:7797:-701.761,-65.9256,0	1/1:65:0,65:0:0:65:2319:-208.969,-19.567,0	0/1:236:135,101:135:4839:101:3620:-254.962,0,-364.62	1/1:212:0,212:0:0:212:7581:-682.327,-63.8184,0	1/1:134:0,133:0:0:133:4753:-427.676,-40.037,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:274:127,147:127:4572:147:5242:-389.434,0,-329.16	0/1:248:130,118:130:4655:118:4193:-302.896,0,-344.456	0/1:72:33,39:33:1188:39:1396:-104.263,0,-85.5544	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:190:91,99:91:3272:99:3536:-261.252,0,-237.503	0/1:31:22,9:22:792:9:315:-19.3553,0,-62.2737	0/1:158:84,74:84:3016:74:2648:-191.004,0,-224.108	0/1:125:60,65:60:2156:65:2303:-169.9,0,-156.678	0/1:83:36,47:36:1292:47:1644:-123.253,0,-91.5983	1/1:136:0,136:0:0:136:4868:-438.272,-40.9401,0	1/1:116:1,115:1:36:115:4115:-366.936,-31.3212,0	1/1:169:1,168:1:36:168:5978:-534.529,-47.2758,0	0/1:137:77,60:77:2755:60:2147:-152.256,0,-206.95	0/1:145:49,96:49:1764:96:3410:-263.464,0,-115.394	0/1:228:101,127:101:3632:127:4532:-339.412,0,-258.449	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:156:1,155:1:36:155:5540:-495.117,-43.3624,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:103:45,58:45:1607:58:2057:-154.392,0,-113.913	0/1:46:18,28:18:648:28:1004:-76.8285,0,-44.8045	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:140:1,139:1:36:139:4973:-444.106,-38.5459,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:233:0,233:0:0:233:8313:-748.179,-70.14,0	1/1:239:0,239:0:0:239:8555:-769.937,-71.9462,0	0/1:107:53,54:53:1908:54:1932:-141.946,0,-139.787	1/1:70:1,69:1:36:69:2475:-219.401,-17.4738,0	0/1:203:91,112:91:3272:112:3984:-297.611,0,-233.59	0/1:104:66,38:66:2368:38:1346:-90.1316,0,-182.071	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	1/1:93:0,93:0:0:93:3319:-298.928,-27.9958,0	0/1:117:63,54:63:2268:54:1940:-139.656,0,-169.162	1/1:25:0,25:0:0:25:883:-79.7875,-7.52575,0	0/1:124:53,71:53:1908:71:2541:-191.609,0,-134.67	0/1:95:45,50:45:1612:50:1780:-131.885,0,-116.772	1/1:205:0,205:0:0:205:7294:-656.514,-61.7112,0	0/1:160:93,67:93:3340:67:2404:-168.452,0,-252.652	0/1:126:69,57:69:2480:57:2048:-146.662,0,-185.523	1/1:113:0,113:0:0:113:4047:-364.416,-34.0164,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:140:1,139:1:36:139:4950:-442.028,-38.5459,0	1/1:121:0,121:0:0:121:4315:-388.439,-36.4246,0	1/1:297:0,297:0:0:297:10619:-955.623,-89.4059,0	0/1:126:62,64:62:2223:64:2271:-166.722,0,-162.404	0/1:61:30,31:30:1071:31:1112:-82.0285,0,-78.3388	1/1:103:0,103:0:0:103:3672:-330.682,-31.0061,0	0/1:215:112,103:112:4011:103:3683:-266.951,0,-296.457	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	1/1:106:0,106:0:0:106:3801:-342.286,-31.9092,0	1/1:95:1,94:1:36:94:3358:-298.837,-24.9996,0	0/1:34:15,19:15:540:19:680:-51.2941,0,-38.7015	0/1:102:52,50:52:1864:50:1764:-128.336,0,-137.334	0/1:94:62,32:62:2228:32:1148:-75.333,0,-172.487	1/1:120:0,120:0:0:120:4312:-388.254,-36.1236,0	1/1:133:2,131:2:72:131:4662:-412.904,-33.2003,0
chr07	1902395	.	T	A	117760	PASS	AB=0.480446;ABP=39.0164;AC=52;AF=0.276596;AN=188;AO=5223;CIGAR=1X;DP=19816;DPB=19816;DPRA=1.20424;EPP=11344.6;EPPR=31676.1;GTI=1;LEN=1;MEANALT=1.08065;MQM=56.2474;MQMR=59.8067;NS=94;NUMALT=1;ODDS=1.57819;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186433;QR=520273;RO=14586;RPL=2404;RPP=74.6132;RPPR=53.7846;RPR=2819;RUN=1;SAF=2404;SAP=74.6132;SAR=2819;SRF=7001;SRP=53.7846;SRR=7585;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:153:82,71:82:2920:71:2518:-179.891,0,-216.562	0/1:323:178,144:178:6365:144:5107:-360.575,0,-475.648	0/1:284:132,152:132:4732:152:5452:-403.466,0,-340.501	0/1:619:310,309:310:11076:309:10998:-802.122,0,-810.388	0/0:156:156,0:156:5600:0:0:0,-46.9607,-504.099	0/0:138:138,0:138:4933:0:0:0,-41.5421,-444.076	0/1:277:167,110:167:5927:110:3933:-270.459,0,-450.104	0/1:219:134,85:134:4784:85:3014:-205.043,0,-364.784	0/0:261:259,1:259:9257:1:32:0,-75.4079,-829.794	0/1:176:93,83:93:3340:83:2956:-212.135,0,-247.835	0/0:124:124,0:124:4432:0:0:0,-37.3277,-398.981	0/1:170:88,82:88:3127:82:2948:-212.039,0,-230.45	0/0:187:187,0:187:6636:0:0:0,-56.2926,-597.3	0/1:134:88,46:88:3160:46:1639:-106.992,0,-244.232	0/1:150:74,76:74:2625:76:2728:-199.842,0,-191.333	0/1:120:59,61:59:2116:61:2184:-159.817,0,-154.567	0/1:133:68,65:68:2436:65:2320:-168.468,0,-179.458	0/1:87:49,37:49:1748:37:1315:-91.7627,0,-131.355	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.932	0/1:395:208,187:208:7430:187:6695:-482.937,0,-549.83	0/0:372:372,0:372:13256:0:0:0,-111.983,-1192.82	0/1:219:58,161:58:2075:161:5753:-451.302,0,-121.094	0/1:218:115,103:115:4132:103:3700:-267.083,0,-306.297	0/1:236:153,83:153:5444:83:2973:-196.467,0,-419.032	0/1:177:86,91:86:3067:91:3248:-238.482,0,-221.947	0/0:659:659,0:659:23541:0:0:0,-198.379,-2117.99	0/0:566:563,1:563:20104:1:36:0,-166.573,-1805.08	0/0:80:80,0:80:2853:0:0:0,-24.0824,-256.994	0/1:632:328,304:328:11701:304:10829:-783.289,0,-862.674	0/0:288:288,0:288:10289:0:0:0,-86.6966,-925.915	0/0:261:261,0:261:9283:0:0:0,-78.5688,-835.346	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.742	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:21:21,0:21:744:0:0:0,-6.32163,-66.3438	0/1:20:10,10:10:351:10:360:-26.5115,0,-25.9061	0/1:421:215,206:215:7661:206:7341:-533.641,0,-562.791	0/1:308:179,129:179:6368:129:4603:-321.467,0,-480.46	0/1:92:46,46:46:1656:46:1618:-117.646,0,-121.617	0/1:11:3,8:3:108:8:288:-22.8943,0,-6.76384	0/1:307:157,150:157:5579:150:5365:-390.102,0,-409.8	0/1:59:31,28:31:1089:28:989:-71.1961,0,-80.5542	0/1:340:170,170:170:6067:170:6053:-441.462,0,-443.759	0/1:157:91,66:91:3224:66:2355:-164.801,0,-243.118	0/1:117:58,59:58:2059:59:2116:-155.164,0,-150.358	0/0:305:305,0:305:10892:0:0:0,-91.8141,-979.858	0/0:260:260,0:260:9245:0:0:0,-78.2678,-831.952	0/0:488:487,1:487:17379:1:36:0,-143.309,-1559.93	0/1:201:104,97:104:3721:97:3478:-251.584,0,-274.569	0/1:307:146,161:146:5220:161:5758:-425.267,0,-377.514	0/1:280:163,117:163:5824:117:4203:-294.026,0,-439.984	0/0:12:11,1:11:387:1:36:0,-0.0140849,-31.5677	0/0:219:219,0:219:7844:0:0:0,-65.9256,-705.876	0/0:154:153,1:153:5450:1:36:0,-42.7603,-485.997	0/1:17:11,6:11:396:6:216:-14.5916,0,-30.6737	0/1:262:134,128:134:4790:128:4553:-329.813,0,-352.339	0/1:123:55,68:55:1964:68:2395:-178.43,0,-140.009	0/1:19:15,4:15:536:4:140:-7.22021,0,-42.8552	0/0:33:33,0:33:1148:0:0:0,-9.93399,-103.623	0/0:169:169,0:169:6036:0:0:0,-50.8741,-542.938	0/0:209:209,0:209:7440:0:0:0,-62.9153,-669.591	0/1:11:9,2:9:320:2:72:-3.4955,0,-25.8287	0/0:439:438,1:438:15573:1:36:0,-128.554,-1397.12	0/0:468:466,2:466:16609:2:66:0,-134.644,-1487.35	0/1:150:85,65:85:3023:65:2318:-163.367,0,-227.126	0/0:239:239,0:239:8535:0:0:0,-71.9462,-768.062	0/1:362:197,164:197:7060:164:5868:-418.319,0,-526.402	0/1:229:75,154:75:2671:154:5527:-427.864,0,-171.695	0/1:64:31,33:31:1099:33:1158:-84.6728,0,-79.9379	0/0:137:137,0:137:4890:0:0:0,-41.2411,-440.235	0/1:156:87,69:87:3104:69:2474:-174.963,0,-232.623	0/0:42:42,0:42:1483:0:0:0,-12.6433,-133.764	0/1:277:161,116:161:5725:116:4136:-286.655,0,-431.889	0/1:195:112,83:112:3980:83:2952:-205.979,0,-299.671	0/0:347:347,0:347:12305:0:0:0,-104.457,-1106.82	0/1:270:137,133:137:4884:133:4759:-346.732,0,-358.429	0/1:244:96,148:96:3392:148:5293:-401.485,0,-232.029	0/0:226:224,2:224:7989:2:72:0,-61.2331,-712.001	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:236:235,0:235:8374:0:0:0,-70.742,-753.09	0/0:244:242,2:242:8638:2:72:0,-66.6517,-770.579	0/0:442:442,0:442:15772:0:0:0,-133.055,-1418.55	0/1:243:130,113:130:4645:113:4029:-289.113,0,-345.005	0/1:150:74,76:74:2652:76:2728:-200.159,0,-193.765	0/0:171:169,2:169:6030:2:72:0,-44.6398,-535.942	0/1:271:154,117:154:5499:117:4166:-292.2,0,-413.446	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.077	0/0:155:155,0:155:5519:0:0:0,-46.6596,-496.797	0/0:126:126,0:126:4484:0:0:0,-37.9298,-403.518	0/1:91:48,43:48:1716:43:1548:-111.904,0,-127.332	0/1:217:116,101:116:4126:101:3588:-255.937,0,-305.973	0/1:149:60,89:60:2139:89:3182:-241.549,0,-147.924	0/0:295:295,0:295:10559:0:0:0,-88.8038,-950.197	0/0:195:195,0:195:6956:0:0:0,-58.7008,-626.091
chr07	1902450	.	AG	CC,CG	220797	PASS	AB=0.508729,0.489196;ABP=6.83937,8.87534;AC=135,53;AF=0.718085,0.281915;AN=188;AO=7603,2832;CIGAR=2X,1X1M;DP=10452;DPB=10454;DPRA=0,1.00771;EPP=16512.7,6152.62;EPPR=11.6962;GTI=2;LEN=2,1;MEANALT=1.7234,2.14545;MQM=59.9766,59.9587;MQMR=57;NS=94;NUMALT=2;ODDS=0.807507;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=70,70;PQR=0;PRO=0;QA=268956,101265;QR=133;RO=4;RPL=7603,2832;RPP=16512.7,6152.62;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=16512.7,6152.62;SAR=7603,2832;SRF=0;SRP=11.6962;SRR=4;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:59:0,19,40:0:0:19,40:672,1409:-169.608,-115.064,-109.344,-54.896,0,-42.8548	1/2:253:0,141,111:0:0:141,111:4972,3965:-728.095,-323.266,-280.821,-404.825,0,-371.411	1/2:122:0,54,68:0:0:54,68:1889,2433:-352.43,-198.754,-182.498,-154.029,0,-133.559	1/2:358:0,177,181:0:0:177,181:6274,6476:-1039.5,-528.378,-475.095,-511.414,0,-456.927	1/1:89:0,89,0:0:0:89,0:3129,0:-281.835,-26.7917,0,-281.835,-26.7917,-281.835	1/1:73:0,73,0:0:0:73,0:2581,0:-232.537,-21.9752,0,-232.537,-21.9752,-232.537	1/2:137:0,77,60:0:0:77,60:2729,2148:-397.844,-175.526,-152.346,-222.675,0,-204.613	1/2:140:0,84,56:0:0:84,56:2942,2004:-403.146,-163.774,-138.488,-239.726,0,-222.868	1/1:124:0,124,0:0:0:124,0:4346,0:-391.317,-37.3277,0,-391.317,-37.3277,-391.317	1/2:114:1,73,40:1:36:73,40:2564,1413:-320.234,-111.855,-92.8176,-205.735,0,-196.631	1/1:26:0,26,0:0:0:26,0:930,0:-84.0189,-7.82678,0,-84.0189,-7.82678,-84.0189	1/2:65:0,35,29:0:0:35,29:1232,1035:-184.757,-84.4646,-73.9285,-100.392,0,-91.6623	1/1:63:0,63,0:0:0:63,0:2231,0:-201.053,-18.9649,0,-201.053,-18.9649,-201.053	1/2:49:0,30,18:0:0:30,18:1065,648:-139.665,-52.8924,-43.8615,-86.7896,0,-81.371	1/2:50:0,26,24:0:0:26,24:934,864:-147.051,-70.8578,-63.0311,-76.5525,0,-69.3278	1/2:52:0,25,27:0:0:25,27:887,968:-151.575,-79.3096,-71.7838,-72.6215,0,-64.4937	1/2:94:0,45,49:0:0:45,49:1614,1751:-274.769,-143.123,-129.577,-132.004,0,-117.253	1/2:58:0,33,25:0:0:33,25:1171,900:-169.2,-73.7953,-63.8613,-95.7626,0,-88.2369	1/1:36:0,36,0:0:0:36,0:1283,0:-115.771,-10.8371,0,-115.771,-10.8371,-115.771	1/2:207:0,93,114:0:0:93,114:3284,4058:-598.516,-331.088,-303.092,-267.782,0,-233.465	1/1:222:0,221,0:0:0:221,0:7866,0:-707.609,-66.5276,0,-707.609,-66.5276,-707.609	1/2:133:0,36,96:0:0:36,96:1259,3424:-381.533,-279.113,-268.276,-102.412,0,-73.5131	1/2:89:0,46,43:0:0:46,43:1641,1544:-260.081,-126.309,-112.461,-134.13,0,-121.186	1/2:121:0,72,49:0:0:72,49:2575,1756:-353.54,-143.574,-121.899,-210.325,0,-195.574	1/2:77:0,44,33:0:0:44,33:1542,1172:-221.324,-95.8535,-82.6082,-125.824,0,-115.89	1/1:415:0,414,0:0:0:414,0:14598,0:-1313.21,-124.626,0,-1313.21,-124.626,-1313.21	1/1:252:0,252,0:0:0:252,0:8908,0:-801.648,-75.8596,0,-801.648,-75.8596,-801.648	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/2:367:0,191,176:0:0:191,176:6774,6313:-1067.16,-515.276,-457.78,-552.238,0,-499.257	1/1:185:0,185,0:0:0:185,0:6581,0:-592.371,-55.6906,0,-592.371,-55.6906,-592.371	1/1:135:0,135,0:0:0:135,0:4797,0:-431.876,-40.6391,0,-431.876,-40.6391,-431.876	1/1:14:0,14,0:0:0:14,0:493,0:-44.7017,-4.21442,0,-44.7017,-4.21442,-44.7017	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:10:0,10,0:0:0:10,0:349,0:-31.7447,-3.0103,0,-31.7447,-3.0103,-31.7447	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:10:0,3,7:0:0:3,7:106,252:-29.5348,-20.9039,-20.0008,-8.98601,0,-6.8788	1/2:203:0,92,110:0:0:92,110:3255,3921:-584.806,-319.686,-291.992,-265.191,0,-232.078	1/2:223:1,117,105:1:25:117,105:4163,3760:-643.764,-304.791,-271.516,-337.435,0,-307.773	1/2:38:0,16,22:0:0:16,22:576,784:-111.261,-64.2613,-59.4448,-47.3585,0,-40.7358	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/2:198:0,99,98:0:0:99,98:3518,3512:-573.094,-286.429,-256.627,-286.662,0,-257.161	1/2:28:0,16,12:0:0:16,12:570,432:-82.0671,-35.6088,-30.7924,-46.8165,0,-43.2041	1/2:175:0,84,91:0:0:84,91:2932,3229:-501.909,-263.436,-238.149,-238.825,0,-211.431	1/2:86:0,52,34:0:0:52,34:1810,1220:-247.04,-99.8718,-84.2182,-147.523,0,-137.288	1/2:63:0,30,33:0:0:30,33:1069,1188:-184.427,-97.2946,-88.2637,-87.4901,0,-77.5561	1/1:171:0,171,0:0:0:171,0:5992,0:-539.391,-51.4761,0,-539.391,-51.4761,-539.391	1/1:135:0,135,0:0:0:135,0:4788,0:-431.077,-40.6391,0,-431.077,-40.6391,-431.077	1/1:278:0,278,0:0:0:278,0:9838,0:-885.309,-83.6863,0,-885.309,-83.6863,-885.309	1/2:126:0,55,71:0:0:55,71:1942,2542:-365.801,-207.658,-191.101,-158.498,0,-137.125	1/2:186:0,75,110:0:0:75,110:2680,3941:-539.916,-321.407,-298.829,-218.507,0,-185.394	1/2:175:0,112,63:0:0:112,63:3984,2249:-508.386,-183.707,-149.991,-325.036,0,-306.071	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:126:0,126,0:0:0:126,0:4481,0:-403.459,-37.9298,0,-403.459,-37.9298,-403.459	1/1:41:0,40,1:0:0:40,1:1412,36:-127.015,-12.0412,0,-124.078,-8.74396,-123.777	1/2:11:0,8,3:0:0:8,3:288,108:-32.6714,-9.17208,-6.76384,-23.8592,0,-22.9561	1/2:141:0,73,68:0:0:73,68:2590,2436:-410.041,-199.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chr07	1943605	.	G	C	130731	PASS	AB=0.474975;ABP=30.5066;AC=136;AF=0.723404;AN=188;AO=6320;CIGAR=1X;DP=8991;DPB=8991;DPRA=0;EPP=13718;EPPR=5787.81;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.9335;MQMR=54.9245;NS=94;NUMALT=1;ODDS=0.569533;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226460;QR=95060;RO=2664;RPL=1;RPP=13718;RPPR=5787.81;RPR=6319;RUN=1;SAF=6320;SAP=13726.7;SAR=0;SRF=2664;SRP=5787.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:84:40,44:40:1432:44:1569:-116.213,0,-103.751	0/1:75:38,37:38:1368:37:1305:-95.1677,0,-100.716	0/1:83:30,53:30:1072:53:1899:-146.202,0,-71.7001	0/1:233:96,137:96:3426:137:4912:-372.089,0,-238.079	1/1:64:1,63:1:36:63:2241:-198.357,-15.6714,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:112:60,52:60:2122:52:1868:-134.684,0,-157.34	0/1:151:95,56:95:3363:56:2016:-136.257,0,-257.116	1/1:130:0,130:0:0:130:4655:-419.108,-39.1339,0	0/1:81:40,41:40:1425:41:1476:-108.746,0,-104.031	1/1:83:2,81:2:57:81:2904:-256.179,-19.5762,0	0/1:113:45,68:45:1616:68:2444:-186.198,0,-111.565	1/1:95:0,95:0:0:95:3420:-308.006,-28.5979,0	0/1:86:48,38:48:1728:38:1356:-96.4519,0,-129.745	0/1:83:44,39:44:1535:39:1396:-100.954,0,-113.304	0/1:83:44,39:44:1576:39:1400:-101.314,0,-117.006	0/1:34:14,20:14:500:20:716:-54.5327,0,-35.0561	0/1:48:22,26:22:792:26:936:-70.11,0,-57.0825	1/1:60:0,60:0:0:60:2160:-194.663,-18.0618,0	0/1:195:101,94:101:3624:94:3372:-244.995,0,-267.303	1/1:109:0,109:0:0:109:3902:-351.372,-32.8123,0	0/1:106:70,36:70:2516:36:1296:-85.0348,0,-194.55	0/1:113:56,57:56:1982:57:2033:-149.225,0,-144.445	0/1:29:7,22:7:252:22:792:-62.8758,0,-14.2754	0/1:133:82,51:82:2910:51:1813:-123.409,0,-221.824	1/1:160:0,160:0:0:160:5722:-515.093,-48.1648,0	1/1:311:0,311:0:0:311:11146:-1003.01,-93.6203,0	1/1:50:0,50:0:0:50:1792:-161.559,-15.0515,0	0/1:211:120,91:120:4233:91:3253:-229.461,0,-317.23	1/1:126:0,125:0:0:125:4484:-403.362,-37.6288,0	1/1:112:0,112:0:0:112:4007:-360.811,-33.7154,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:13:10,3:10:360:3:104:-5.78942,0,-28.7972	0/1:229:124,105:124:4448:105:3755:-269.21,0,-331.127	0/1:140:92,48:92:3281:48:1728:-113.661,0,-253.058	0/1:69:29,40:29:1040:40:1436:-108.763,0,-73.044	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:112:57,55:57:2052:55:1963:-143.229,0,-151.045	0/1:44:18,26:18:644:26:936:-71.3141,0,-44.9827	0/1:145:67,78:67:2359:78:2800:-208.59,0,-168.705	0/1:74:32,42:32:1137:42:1512:-114.098,0,-80.2461	0/1:61:35,26:35:1245:26:921:-64.8424,0,-93.8756	1/1:112:0,112:0:0:112:4008:-360.906,-33.7154,0	1/1:134:0,134:0:0:134:4801:-432.24,-40.338,0	1/1:149:0,148:0:0:148:5293:-476.139,-44.5524,0	0/1:108:59,49:59:2109:49:1764:-126.533,0,-157.372	0/1:88:52,36:52:1838:36:1288:-89.7329,0,-139.036	0/1:52:26,26:26:902:26:928:-68.1847,0,-65.7478	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:127:0,127:0:0:127:4543:-409.03,-38.2308,0	1/1:57:2,55:2:72:55:1972:-170.925,-10.329,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.628	0/1:138:79,59:79:2813:59:2112:-148.807,0,-211.617	0/1:58:35,23:35:1245:23:824:-57.0236,0,-94.7787	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6216	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:141:1,140:1:36:140:5032:-449.423,-38.8507,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.5906	1/1:257:0,257:0:0:257:9177:-825.894,-77.3647,0	1/1:122:2,120:2:72:120:4296:-379.987,-29.896,0	0/1:55:34,21:34:1201:21:752:-51.4496,0,-91.7305	1/1:73:0,73:0:0:73:2616:-235.684,-21.9752,0	0/1:142:62,80:62:2198:80:2864:-215.23,0,-155.12	0/1:147:113,34:113:4026:34:1224:-66.2156,0,-317.879	0/1:61:38,23:38:1368:23:828:-56.4813,0,-104.931	1/1:58:0,58:0:0:58:2067:-186.296,-17.4597,0	0/1:59:32,27:32:1152:27:972:-70.0371,0,-86.1118	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4258	0/1:154:81,73:81:2916:73:2620:-189.688,0,-216.045	0/1:96:53,42:53:1908:42:1496:-105.974,0,-142.863	1/1:147:0,147:0:0:147:5284:-475.69,-44.2514,0	0/1:132:78,54:78:2800:54:1936:-134.774,0,-212.226	0/1:121:53,68:53:1904:68:2440:-183.424,0,-135.017	1/1:111:0,111:0:0:111:3967:-357.221,-33.4143,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:126:1,124:1:36:124:4444:-396.532,-34.3938,0	1/1:73:0,73:0:0:73:2624:-236.404,-21.9752,0	1/1:224:1,223:1:36:223:7984:-714.981,-63.8362,0	0/1:77:42,35:42:1508:35:1256:-90.1626,0,-112.686	0/1:116:60,56:60:2152:56:2012:-146.424,0,-158.831	1/1:75:0,74:0:0:74:2660:-239.318,-22.2762,0	0/1:177:79,98:79:2821:98:3520:-263.716,0,-200.589	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:106:0,106:0:0:106:3804:-342.557,-31.9092,0	1/1:87:0,86:0:0:86:3096:-278.496,-25.8886,0	0/1:53:22,31:22:788:31:1112:-84.4334,0,-55.208	0/1:127:57,69:57:2048:69:2480:-185.157,0,-146.082	0/1:97:54,43:54:1940:43:1544:-110.046,0,-145.501	1/1:98:0,98:0:0:98:3501:-315.299,-29.5009,0	1/1:136:2,134:2:72:134:4799:-425.232,-34.1104,0
chr07	1943911	.	T	C	69552.1	PASS	AB=0.474322;ABP=52.6359;AC=52;AF=0.276596;AN=188;AO=4116;CIGAR=1X;DP=16184;DPB=16184;DPRA=1.06689;EPP=8759.32;EPPR=25434.5;GTI=0;LEN=1;MEANALT=1.03509;MQM=59.9942;MQMR=59.9944;NS=94;NUMALT=1;ODDS=5.81959;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147288;QR=432491;RO=12065;RPL=4095;RPP=8759.32;RPPR=25434.5;RPR=21;RUN=1;SAF=0;SAP=8940.79;SAR=4116;SRF=0;SRP=26201.8;SRR=12065;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:28,26:28:1000:26:919:-66.7705,0,-74.0598	0/1:278:149,129:149:5348:129:4636:-333.714,0,-397.765	0/1:204:107,97:107:3817:97:3458:-250.023,0,-282.316	0/1:355:200,155:200:7165:155:5547:-392.488,0,-538.038	0/0:132:132,0:132:4732:0:0:0,-39.736,-426.038	0/0:99:98,1:98:3520:1:36:0,-26.2037,-313.41	0/1:219:122,97:122:4361:97:3484:-247.845,0,-326.738	0/1:279:157,122:157:5636:122:4369:-309.391,0,-423.371	0/0:185:185,0:185:6614:0:0:0,-55.6905,-595.337	0/1:201:110,91:110:3940:91:3256:-232.754,0,-294.285	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/1:102:49,53:49:1760:53:1895:-140.122,0,-127.979	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016	0/1:136:66,70:66:2368:70:2515:-185.662,0,-172.438	0/1:80:37,43:37:1328:43:1548:-115.531,0,-95.7398	0/1:106:49,57:49:1760:57:2033:-151.321,0,-126.775	0/1:125:53,72:53:1900:72:2584:-195.18,0,-133.649	0/1:86:37,49:37:1328:49:1748:-131.716,0,-93.9337	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:317:174,143:174:6252:143:5117:-365.244,0,-467.334	0/0:223:223,0:223:7973:0:0:0,-67.1297,-717.592	0/1:206:75,131:75:2688:131:4696:-360.787,0,-180.152	0/1:156:82,74:82:2903:74:2633:-190.256,0,-214.541	0/1:187:80,107:80:2853:107:3836:-289.143,0,-200.714	0/1:114:79,35:79:2836:35:1230:-76.6834,0,-221.161	0/0:605:604,1:604:21696:1:36:0,-178.525,-1948.47	0/0:361:360,1:360:12928:1:36:0,-105.074,-1158.95	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:416:241,175:241:8637:175:6216:-434.309,0,-652.093	0/0:285:285,0:285:10232:0:0:0,-85.7935,-920.803	0/0:218:218,0:218:7801:0:0:0,-65.6245,-702.118	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:254:140,114:140:5032:114:4087:-291.553,0,-376.562	0/1:374:208,166:208:7476:166:5925:-420.772,0,-560.294	0/1:84:45,39:45:1616:39:1395:-100.562,0,-120.443	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:259:147,112:147:5243:112:4012:-283.301,0,-394.037	0/1:37:19,18:19:680:18:648:-47.5138,0,-50.3911	0/1:194:83,111:83:2980:111:3951:-297.382,0,-210.032	0/1:118:52,65:52:1857:65:2327:-174.109,0,-131.827	0/1:106:63,43:63:2264:43:1544:-107.344,0,-172.113	0/0:168:168,0:168:6032:0:0:0,-50.573,-542.982	0/0:224:224,0:224:8036:0:0:0,-67.4307,-723.257	0/0:329:329,0:329:11800:0:0:0,-99.0389,-1061.86	0/1:228:136,91:136:4853:91:3268:-225.646,0,-368.23	0/1:252:135,117:135:4848:117:4191:-301.51,0,-360.613	0/1:342:166,176:166:5949:176:6308:-464.859,0,-432.563	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:262:262,0:262:9404:0:0:0,-78.8699,-846.319	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:27:17,10:17:608:10:356:-24.2534,0,-46.9242	0/1:213:129,84:129:4624:84:3000:-206.112,0,-352.203	0/1:97:44,53:44:1580:53:1896:-141.718,0,-113.292	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:162:162,0:162:5804:0:0:0,-48.7669,-522.472	0/0:164:162,2:162:5820:2:72:0,-42.5322,-517.074	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:472:471,0:471:16896:0:0:0,-141.785,-1520.03	0/0:495:495,0:495:17761:0:0:0,-149.01,-1598.09	0/1:140:75,65:75:2688:65:2336:-168.355,0,-200.02	0/0:163:163,0:163:5841:0:0:0,-49.0679,-525.771	0/1:351:168,183:168:6032:183:6552:-484.101,0,-437.32	0/1:167:64,103:64:2296:103:3696:-282.568,0,-156.629	0/1:39:17,22:17:612:22:776:-58.4206,0,-43.6733	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	0/1:111:65,46:65:2332:46:1656:-115.914,0,-176.725	0/1:33:14,19:14:489:19:680:-51.5952,0,-34.4049	0/1:162:81,81:81:2897:81:2863:-209.14,0,-212.197	0/1:136:65,71:65:2336:71:2548:-188.63,0,-169.559	0/0:355:355,0:355:12685:0:0:0,-106.866,-1141.47	0/1:281:186,95:186:6635:95:3407:-222.254,0,-512.637	0/1:227:128,99:128:4584:99:3544:-250.835,0,-344.391	0/0:232:232,0:232:8336:0:0:0,-69.839,-750.243	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:222:222,0:222:7964:0:0:0,-66.8287,-716.78	0/0:252:252,0:252:9025:0:0:0,-75.8596,-812.226	0/0:416:416,0:416:14912:0:0:0,-125.228,-1341.81	0/1:137:66,71:66:2368:71:2539:-187.519,0,-172.137	0/1:115:62,53:62:2228:53:1891:-135.849,0,-166.165	0/0:154:154,0:154:5516:0:0:0,-46.3586,-496.565	0/1:244:132,112:132:4696:112:4024:-288.896,0,-349.35	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/1:76:41,35:41:1456:35:1256:-90.467,0,-108.458	0/1:96:48,48:48:1720:48:1728:-126.906,0,-126.187	0/1:115:46,69:46:1656:69:2480:-188.835,0,-114.71	0/0:242:242,0:242:8668:0:0:0,-72.8493,-780.113	0/0:168:167,1:167:5988:1:36:0,-46.9748,-535.426
chr07	2093125	.	C	A	129668	PASS	AB=0.526783;ABP=70.3585;AC=53;AF=0.281915;AN=188;AO=5719;CIGAR=1X;DP=19284;DPB=19284;DPRA=1.12972;EPP=12395.6;EPPR=29396.1;GTI=0;LEN=1;MEANALT=1.21875;MQM=59.8645;MQMR=59.988;NS=94;NUMALT=1;ODDS=1.76592;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201387;QR=479342;RO=13548;RPL=3234;RPP=216.019;RPPR=492.746;RPR=2485;RUN=1;SAF=3237;SAP=219.446;SAR=2482;SRF=7651;SRP=496.114;SRR=5897;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:113:55,58:55:1907:58:2056:-151.294,0,-137.886	0/1:204:97,107:97:3430:107:3746:-275.934,0,-247.503	0/1:289:145,144:145:5119:144:5081:-370.413,0,-373.857	0/1:475:221,253:221:7831:253:8929:-660.432,0,-561.779	0/0:166:163,3:163:5808:3:100:0,-40.6405,-513.507	0/0:158:158,0:158:5622:0:0:0,-47.5627,-506.103	0/1:286:151,134:151:5313:134:4743:-340.878,0,-392.158	0/1:377:192,185:192:6776:185:6542:-474.68,0,-496.432	0/0:233:233,0:233:8183:0:0:0,-70.14,-736.492	0/1:249:106,143:106:3749:143:5030:-377.857,0,-262.656	0/0:177:177,0:177:6255:0:0:0,-53.2823,-563.05	0/1:221:108,112:108:3819:112:3961:-290.094,0,-277.319	0/0:184:184,0:184:6521:0:0:0,-55.3895,-586.975	0/1:153:80,71:80:2790:71:2521:-181.326,0,-205.524	0/1:198:95,103:95:3354:103:3612:-265.681,0,-242.473	0/1:154:62,92:62:2186:92:3280:-248.902,0,-150.647	0/1:162:75,87:75:2675:87:3052:-226.142,0,-192.228	0/1:105:52,53:52:1844:53:1873:-137.237,0,-134.629	0/0:108:108,0:108:3795:0:0:0,-32.5112,-341.643	0/1:272:139,132:139:4953:132:4596:-331.855,0,-363.981	0/0:331:331,0:331:11721:0:0:0,-99.6409,-1054.77	0/1:142:46,96:46:1627:96:3397:-263.197,0,-103.972	0/1:200:123,77:123:4377:77:2690:-182.136,0,-333.898	0/1:237:120,117:120:4235:117:4143:-301.708,0,-309.988	0/1:164:79,85:79:2820:85:2983:-219.328,0,-204.671	0/0:720:720,0:720:25530:0:0:0,-216.742,-2295.91	0/0:473:469,4:469:16630:4:144:0,-129.074,-1483.05	0/0:93:92,1:92:3261:1:32:0,-24.7965,-290.512	0/1:459:220,238:220:7772:238:8373:-615.295,0,-561.289	0/0:233:233,0:233:8318:0:0:0,-70.14,-748.63	0/0:253:253,0:253:9002:0:0:0,-76.1606,-810.164	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:44:44,0:44:1541:0:0:0,-13.2453,-138.977	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:28:12,16:12:419:16:538:-40.2896,0,-29.6138	0/1:485:243,241:243:8528:241:8526:-621.278,0,-621.472	0/1:248:115,132:115:4046:132:4650:-343.943,0,-289.616	0/1:128:58,70:58:2054:70:2481:-185.01,0,-146.599	0/1:5:2,3:2:59:3:100:-7.82529,0,-4.09899	0/1:282:139,143:139:4945:143:5032:-368.115,0,-360.311	0/1:81:47,34:47:1684:34:1207:-84.5518,0,-127.464	0/1:303:153,150:153:5457:150:5213:-378.09,0,-400.047	0/1:188:82,106:82:2846:106:3775:-283.356,0,-199.78	0/1:151:66,85:66:2343:85:2974:-222.303,0,-165.674	0/0:217:217,0:217:7711:0:0:0,-65.3235,-694.031	0/0:175:175,0:175:6192:0:0:0,-52.6802,-557.379	0/0:287:287,0:287:10180:0:0:0,-86.3956,-916.136	0/1:164:73,91:73:2590:91:3181:-237.142,0,-183.98	0/1:312:131,181:131:4608:181:6371:-479.555,0,-320.969	0/1:320:144,176:144:5134:176:6269:-467.958,0,-365.873	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:254:254,0:254:8997:0:0:0,-76.4616,-809.716	0/0:113:113,0:113:4012:0:0:0,-34.0164,-361.273	0/1:21:6,15:6:208:15:517:-40.5248,0,-12.7375	0/1:288:135,153:135:4725:153:5374:-397.092,0,-338.717	0/1:99:43,56:43:1523:56:1980:-148.672,0,-107.56	0/1:21:9,12:9:320:12:428:-32.5363,0,-22.8207	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:225:225,0:225:7977:0:0:0,-67.7317,-717.955	0/0:252:251,1:251:8830:1:32:0,-72.6602,-791.498	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/0:371:368,3:368:13051:3:108:0,-101.607,-1164.33	0/0:387:378,6:378:13403:6:216:0,-96.1648,-1186.18	0/1:147:69,78:69:2451:78:2697:-198.7,0,-176.593	0/0:164:163,1:163:5773:1:36:0,-45.7706,-516.093	0/1:295:147,147:147:5221:147:5114:-371.527,0,-381.169	0/1:275:86,189:86:3075:189:6670:-517.581,0,-194.195	0/1:102:52,50:52:1841:50:1758:-127.791,0,-135.263	0/0:99:99,0:99:3514:0:0:0,-29.802,-316.471	0/1:174:88,86:88:3119:86:3054:-222.708,0,-228.556	0/1:44:24,20:24:851:20:701:-50.1641,0,-63.6641	0/1:188:74,114:74:2631:114:4038:-307.011,0,-180.444	0/1:133:59,73:59:2057:73:2568:-190.53,0,-145.341	0/0:408:408,0:408:14476:0:0:0,-122.82,-1302.6	0/1:306:125,180:125:4413:180:6363:-480.617,0,-305.213	0/1:240:139,101:139:4900:101:3513:-244.131,0,-368.911	0/0:218:216,2:216:7628:2:72:0,-58.7878,-679.727	0/0:32:31,1:31:1104:1:36:0,-6.03468,-96.0724	0/0:225:225,0:225:8013:0:0:0,-67.7317,-721.195	0/0:265:265,0:265:9416:0:0:0,-79.7729,-847.41	0/0:362:359,2:359:12757:2:68:0,-102.567,-1141.49	0/1:213:100,113:100:3494:113:3988:-294.988,0,-249.19	0/1:173:83,90:83:2910:90:3163:-232.808,0,-210.057	0/0:202:202,0:202:7082:0:0:0,-60.8081,-637.446	0/1:354:172,182:172:6078:182:6432:-472.381,0,-440.561	0/0:92:92,0:92:3264:0:0:0,-27.6948,-293.98	0/0:189:189,0:189:6626:0:0:0,-56.8947,-596.429	0/0:166:166,0:166:5771:0:0:0,-49.971,-519.51	0/1:140:64,75:64:2229:75:2656:-197.082,0,-158.668	0/1:246:126,120:126:4468:120:4227:-306.551,0,-328.239	0/1:176:61,115:61:2138:115:3985:-305.86,0,-139.704	0/0:215:215,0:215:7560:0:0:0,-64.7214,-680.454	0/0:302:301,1:301:10632:1:36:0,-87.3128,-953.201
chr07	2093152	.	C	T	139155	PASS	AB=0.537636;ABP=139.493;AC=53;AF=0.281915;AN=188;AO=5989;CIGAR=1X;DP=19604;DPB=19604;DPRA=1.16;EPP=12938.6;EPPR=29461.3;GTI=1;LEN=1;MEANALT=1.04762;MQM=59.8325;MQMR=59.9877;NS=94;NUMALT=1;ODDS=2.81999;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213771;QR=483905;RO=13610;RPL=3414;RPP=258.236;RPPR=453.324;RPR=2575;RUN=1;SAF=3408;SAP=250.987;SAR=2581;SRF=7634;SRP=441.607;SRR=5976;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:119:55,64:55:1963:64:2300:-171.436,0,-141.122	0/1:208:101,107:101:3565:107:3818:-281.183,0,-258.444	0/1:297:142,155:142:5037:155:5526:-407.651,0,-364.071	0/1:487:219,268:219:7782:268:9571:-714.621,0,-553.813	0/0:167:163,3:163:5784:3:108:0,-40.2556,-510.6	0/0:154:154,0:154:5479:0:0:0,-46.3586,-493.238	0/1:286:145,140:145:5137:140:5023:-366.061,0,-376.318	0/1:385:192,193:192:6814:193:6856:-500.939,0,-497.439	0/0:233:233,0:233:8283:0:0:0,-70.14,-745.484	0/1:251:105,146:105:3732:146:5161:-388.989,0,-260.522	0/0:178:178,0:178:6316:0:0:0,-53.5833,-568.534	0/1:225:108,117:108:3832:117:4169:-307.659,0,-277.298	0/0:183:183,0:183:6496:0:0:0,-55.0885,-584.724	0/1:160:82,78:82:2886:78:2767:-201.105,0,-211.811	0/1:204:99,105:99:3521:105:3751:-276.347,0,-255.689	0/1:161:65,96:65:2287:96:3407:-258.272,0,-157.621	0/1:165:76,89:76:2706:89:3196:-238.193,0,-194.113	0/1:110:53,57:53:1896:57:2039:-150.666,0,-137.805	0/0:107:107,0:107:3810:0:0:0,-32.2102,-343.098	0/1:287:141,146:141:5024:146:5205:-382.132,0,-365.911	0/0:339:339,0:339:12069:0:0:0,-102.049,-1086.07	0/1:147:47,100:47:1666:100:3531:-273.748,0,-105.975	0/1:203:122,81:122:4349:81:2904:-200.48,0,-330.476	0/1:239:120,119:120:4273:119:4259:-311.539,0,-312.802	0/1:170:84,86:84:3005:86:3084:-226.605,0,-219.504	0/0:723:723,0:723:25675:0:0:0,-217.645,-2308.6	0/0:476:474,2:474:16901:2:72:0,-136.454,-1513.77	0/0:92:91,1:91:3216:1:36:0,-24.0965,-286.062	0/1:474:225,249:225:8014:249:8868:-655.329,0,-578.594	0/0:233:233,0:233:8293:0:0:0,-70.14,-746.363	0/0:253:253,0:253:9024:0:0:0,-76.1606,-812.141	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:31:13,18:13:464:18:631:-47.782,0,-32.7656	0/1:490:237,253:237:8387:253:9061:-667.899,0,-607.338	0/1:258:117,141:117:4160:141:5030:-375.17,0,-296.909	0/1:128:55,73:55:1932:73:2617:-197.245,0,-135.622	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/1:291:141,150:141:4989:150:5348:-393.83,0,-361.558	0/1:82:46,36:46:1648:36:1292:-91.8993,0,-123.924	0/1:313:158,155:158:5632:155:5517:-402.396,0,-412.779	0/1:198:78,120:78:2739:120:4274:-325.23,0,-187.149	0/1:152:63,89:63:2264:89:3166:-239.246,0,-158.266	0/0:218:218,0:218:7752:0:0:0,-65.6245,-697.716	0/0:174:174,0:174:6231:0:0:0,-52.3792,-560.885	0/0:289:289,0:289:10295:0:0:0,-86.9977,-926.479	0/1:166:76,90:76:2702:90:3205:-238.694,0,-193.453	0/1:320:130,190:130:4606:190:6785:-514.387,0,-318.373	0/1:332:146,186:146:5196:186:6642:-497.888,0,-367.838	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:251:249,0:249:8854:0:0:0,-74.9565,-796.508	0/0:112:112,0:112:3998:0:0:0,-33.7154,-360.009	0/1:22:6,16:6:212:16:572:-45.1908,0,-12.8021	0/1:299:138,161:138:4887:161:5759:-428.31,0,-349.932	0/1:102:43,59:43:1507:59:2112:-159.644,0,-105.215	0/1:21:9,12:9:316:12:432:-32.8987,0,-22.4572	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:235:235,0:235:8321:0:0:0,-70.742,-748.899	0/0:250:249,1:249:8904:1:36:0,-71.6592,-797.744	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/0:375:374,1:374:13291:1:36:0,-109.288,-1192.4	0/0:395:389,6:389:13859:6:212:0,-99.482,-1227.49	0/1:149:67,82:67:2391:82:2917:-217.887,0,-170.593	0/0:159:159,0:159:5657:0:0:0,-47.8638,-509.249	0/1:298:146,152:146:5188:152:5438:-399.813,0,-377.355	0/1:282:86,196:86:3036:196:7023:-547.21,0,-188.577	0/1:105:53,52:53:1908:52:1864:-136.428,0,-140.389	0/0:98:98,0:98:3499:0:0:0,-29.5009,-315.121	0/1:178:90,88:90:3194:88:3147:-229.815,0,-234.101	0/1:47:24,23:24:860:23:819:-59.8808,0,-63.5734	0/1:191:76,115:76:2689:115:4088:-310.59,0,-184.758	0/1:134:57,77:57:2027:77:2747:-206.88,0,-142.364	0/0:412:412,0:412:14626:0:0:0,-124.024,-1316.09	0/1:311:123,188:123:4370:188:6739:-512.948,0,-299.856	0/1:241:141,100:141:5009:100:3535:-245.811,0,-378.409	0/0:222:218,4:218:7761:4:144:0,-53.515,-685.209	0/0:32:31,1:31:1093:1:36:0,-6.03468,-95.0794	0/0:227:227,0:227:8051:0:0:0,-68.3338,-724.614	0/0:271:271,0:271:9641:0:0:0,-81.5791,-867.644	0/0:359:355,3:355:12702:3:108:0,-98.0534,-1132.93	0/1:222:99,123:99:3507:123:4416:-330.764,0,-249.012	0/1:179:86,93:86:3061:93:3323:-245.393,0,-221.834	0/0:206:206,0:206:7292:0:0:0,-62.0122,-656.337	0/1:366:174,192:174:6211:192:6856:-506.892,0,-448.909	0/0:90:90,0:90:3182:0:0:0,-27.0927,-286.603	0/0:185:185,0:185:6569:0:0:0,-55.6905,-591.291	0/0:169:169,0:169:6007:0:0:0,-50.8741,-540.735	0/1:144:66,78:66:2354:78:2792:-208.172,0,-168.769	0/1:252:129,123:129:4568:123:4416:-321.726,0,-335.426	0/1:185:62,123:62:2207:123:4373:-338.054,0,-143.204	0/0:212:212,0:212:7577:0:0:0,-63.8184,-681.969	0/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chr07	2110148	.	A	G	47350.2	PASS	AB=0.47565;ABP=31.1401;AC=52;AF=0.27957;AN=186;AO=2615;CIGAR=1X;DP=10172;DPB=10172;DPRA=1.07276;EPP=5681.41;EPPR=16404.1;GTI=1;LEN=1;MEANALT=1;MQM=50.7086;MQMR=57.1257;NS=93;NUMALT=1;ODDS=3.97723;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93032;QR=270359;RO=7557;RPL=2457;RPP=4391.96;RPPR=13254.7;RPR=158;RUN=1;SAF=2457;SAP=4391.96;SAR=158;SRF=7175;SRP=13262.5;SRR=382;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:21,2:21:743:2:72:0,-0.104156,-59.9686	0/1:172:85,87:85:3039:87:3120:-228.389,0,-221.055	0/1:147:83,64:83:2964:64:2284:-161.071,0,-222.335	0/1:228:115,113:115:4120:113:3997:-289.632,0,-301.975	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5195	0/0:44:44,0:44:1567:0:0:0,-13.2453,-140.433	0/1:172:105,67:105:3749:67:2400:-162.725,0,-285.675	0/1:83:40,43:40:1436:43:1529:-112.395,0,-104.301	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.318	0/1:144:73,71:73:2600:71:2523:-183.053,0,-190.78	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.224	0/1:87:33,54:33:1180:54:1904:-144.289,0,-80.1043	0/0:64:64,0:64:2289:0:0:0,-19.2659,-205.54	0/1:76:40,36:40:1427:36:1279:-91.8802,0,-105.776	0/1:84:34,50:34:1224:50:1788:-134.244,0,-85.1212	0/1:39:19,20:19:684:20:716:-52.8157,0,-49.9712	0/1:66:41,25:41:1459:25:887:-60.0877,0,-111.503	0/1:71:40,31:40:1424:31:1108:-78.3867,0,-106.933	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1138	0/1:202:100,102:100:3577:102:3639:-264.922,0,-261.174	0/0:188:188,0:188:6730:0:0:0,-56.5936,-604.794	0/1:125:58,67:58:2063:67:2351:-173.345,0,-148.167	0/1:98:71,27:71:2548:27:964:-55.9906,0,-199.902	0/1:155:93,62:93:3344:62:2228:-153.472,0,-254.341	0/1:37:24,13:24:848:13:464:-30.8291,0,-65.3685	0/0:368:368,0:368:13137:0:0:0,-110.779,-1181.33	0/0:217:217,0:217:7720:0:0:0,-65.3235,-694.296	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.238	0/1:342:181,161:181:6500:161:5723:-409.189,0,-481.954	0/0:401:401,0:401:14310:0:0:0,-120.713,-1285.77	0/0:163:163,0:163:5823:0:0:0,-49.0679,-523.499	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2549	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4358	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0648	.:.:.:.:.:.:.:.	0/1:9:6,3:6:212:3:108:-7.34057,0,-16.6972	0/1:311:160,151:160:5727:151:5375:-388.427,0,-421.096	0/1:150:79,71:79:2803:71:2526:-181.492,0,-206.873	0/1:50:22,28:22:784:28:1004:-75.2182,0,-55.7484	0/1:2:1,1:1:36:1:36:-2.98442,0,-2.9945	0/1:170:82,88:82:2944:88:3120:-228.971,0,-213.582	0/1:30:16,14:16:576:14:495:-35.7117,0,-43.0259	0/1:84:48,36:48:1712:36:1279:-89.7652,0,-128.842	0/1:81:42,39:42:1512:39:1376:-99.0393,0,-111.907	0/1:86:46,40:46:1656:40:1416:-101.357,0,-123.336	0/0:161:161,0:161:5738:0:0:0,-48.4658,-516.083	0/0:109:109,0:109:3900:0:0:0,-32.8123,-349.38	0/0:179:179,0:179:6404:0:0:0,-53.8844,-575.795	0/1:127:76,51:76:2728:51:1815:-124.441,0,-207.374	0/1:174:90,84:90:3236:84:2993:-215.694,0,-238.728	0/1:204:108,96:108:3864:96:3418:-244.784,0,-286.431	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70181	0/0:122:121,1:121:4322:1:36:0,-33.1364,-384.874	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.262	0/1:21:9,12:9:309:12:432:-32.801,0,-21.768	0/1:148:63,85:63:2260:85:3048:-229.122,0,-158.879	0/1:51:23,28:23:828:28:1000:-74.5246,0,-59.4812	0/1:7:4,3:4:140:3:108:-7.91334,0,-10.829	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6485	0/0:98:98,0:98:3520:0:0:0,-29.5009,-315.686	0/0:105:105,0:105:3750:0:0:0,-31.6081,-337.384	0/1:10:4,6:4:144:6:208:-15.9817,0,-10.3017	0/0:365:358,7:358:12800:7:244:0,-87.6785,-1128.95	0/0:281:277,4:277:9923:4:144:0,-71.3321,-879.061	0/1:99:56,43:56:2008:43:1544:-108.901,0,-151.068	0/0:81:81,0:81:2892:0:0:0,-24.3834,-259.215	0/1:197:132,65:132:4727:65:2315:-148.463,0,-365.822	0/1:82:24,58:24:856:58:2068:-160.165,0,-52.6663	0/1:23:14,9:14:504:9:324:-22.4855,0,-38.7381	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.08	0/1:95:42,53:42:1500:53:1888:-140.512,0,-106.666	0/1:15:8,7:8:288:7:252:-18.4192,0,-21.7487	0/1:98:47,51:47:1684:51:1802:-132.577,0,-121.878	0/1:88:39,49:39:1400:49:1733:-129.204,0,-99.5202	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.259	0/1:212:125,87:125:4484:87:3081:-212.518,0,-339.648	0/1:40:18,22:18:648:22:780:-58.3165,0,-46.4925	0/0:153:152,1:152:5448:1:36:0,-42.4684,-485.345	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.7708	0/0:104:102,2:102:3633:2:72:0,-24.4928,-319.961	0/0:141:141,0:141:5059:0:0:0,-42.4452,-453.719	0/0:217:217,0:217:7754:0:0:0,-65.3235,-696.277	0/1:85:46,39:46:1639:39:1370:-97.2753,0,-122.005	0/1:67:41,26:41:1472:26:928:-63.1169,0,-112.543	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.233	0/1:158:83,75:83:2972:75:2662:-190.849,0,-219.933	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.022	0/0:75:75,0:75:2692:0:0:0,-22.5772,-241.685	0/0:65:65,0:65:2320:0:0:0,-19.5669,-208.815	0/1:28:20,8:20:720:8:284:-17.3949,0,-56.5304	0/1:59:31,28:31:1116:28:984:-70.2334,0,-82.6247	0/1:73:24,49:24:856:49:1752:-134.818,0,-55.2627	0/0:163:163,0:163:5864:0:0:0,-49.0679,-527.084	0/0:111:111,0:111:3980:0:0:0,-33.4143,-357.756
chr07	2113924	.	G	A	134271	PASS	AB=0.451329;ABP=115.251;AC=136;AF=0.723404;AN=188;AO=6498;CIGAR=1X;DP=9503;DPB=9503;DPRA=102.172;EPP=13991.9;EPPR=6319.32;GTI=4;LEN=1;MEANALT=1.01075;MQM=59.4854;MQMR=59.9234;NS=94;NUMALT=1;ODDS=1.23358;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233062;QR=107531;RO=3004;RPL=14;RPP=13991.9;RPPR=6302.23;RPR=6484;RUN=1;SAF=0;SAP=14113.2;SAR=6498;SRF=2;SRP=6508.75;SRR=3002;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:36,25:36:1276:25:891:-61.9312,0,-96.7802	0/1:166:95,71:95:3400:71:2544:-179.07,0,-256.235	0/1:88:49,39:49:1743:39:1400:-99.7635,0,-130.663	0/1:196:95,101:95:3395:101:3618:-266.801,0,-246.763	1/1:96:0,96:0:0:96:3432:-308.828,-28.8989,0	1/1:85:0,85:0:0:85:3052:-273.981,-25.5876,0	0/1:90:58,32:58:2069:32:1152:-76.8942,0,-159.386	0/1:204:96,108:96:3440:108:3872:-285.697,0,-248.389	1/1:136:0,136:0:0:136:4872:-438.111,-40.9401,0	0/1:153:72,81:72:2575:81:2885:-213.762,0,-185.941	1/1:34:0,34:0:0:34:1220:-110.029,-10.235,0	0/1:79:40,39:40:1440:39:1404:-102.841,0,-106.116	1/1:77:0,77:0:0:77:2752:-247.696,-23.1793,0	0/1:58:31,27:31:1107:27:968:-69.9694,0,-82.4804	0/1:72:31,41:31:1103:41:1472:-111.045,0,-77.9056	0/1:51:29,22:29:1044:22:792:-56.2522,0,-78.9214	0/1:64:37,27:37:1317:27:972:-68.5258,0,-99.5639	0/1:56:32,24:32:1143:24:860:-60.8432,0,-86.3206	1/1:14:0,14:0:0:14:504:-45.6804,-4.21442,0	0/1:200:94,106:94:3375:106:3801:-281.967,0,-243.67	1/1:238:0,238:0:0:238:8539:-767.831,-71.6451,0	0/1:110:74,36:74:2651:36:1284:-82.7233,0,-205.722	0/1:61:34,27:34:1220:27:972:-69.4244,0,-91.7438	0/1:173:91,82:91:3260:82:2933:-212.091,0,-241.542	0/1:115:67,48:67:2400:48:1711:-119.644,0,-181.638	1/1:349:2,347:2:72:347:12439:-1112.18,-98.2227,0	1/1:198:0,198:0:0:198:7124:-641.174,-59.6039,0	1/1:46:0,46:0:0:46:1656:-149.314,-13.8474,0	0/1:283:147,136:147:5272:136:4884:-354.426,0,-389.423	1/1:118:1,117:1:36:117:4204:-374.731,-31.9233,0	1/1:158:2,156:2:68:156:5580:-495.803,-41.105,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:21:0,21:0:0:21:756:-68.3496,-6.32163,0	1/1:7:0,7:0:0:7:250:-22.822,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:252:133,119:133:4761:119:4280:-309.509,0,-352.785	0/1:228:141,87:141:5051:87:3124:-212.724,0,-385.965	0/1:40:20,20:20:716:20:720:-53.079,0,-52.7265	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:128:66,62:66:2349:62:2213:-160.884,0,-173.132	0/1:29:11,18:11:383:18:648:-49.922,0,-26.0734	0/1:170:80,89:80:2872:89:3169:-234.165,0,-207.483	0/1:123:67,56:67:2412:56:2012:-144.326,0,-180.309	0/1:80:42,38:42:1508:38:1364:-98.7308,0,-111.932	1/1:80:0,80:0:0:80:2862:-257.806,-24.0824,0	1/1:153:0,153:0:0:153:5479:-493.037,-46.0576,0	1/1:182:0,182:0:0:182:6536:-587.892,-54.7875,0	0/1:144:83,61:83:2959:61:2188:-153.788,0,-223.056	0/1:170:95,75:95:3420:75:2681:-190.07,0,-256.833	0/1:136:78,58:78:2795:58:2084:-146.881,0,-210.251	1/1:9:0,9:0:0:9:324:-29.3749,-2.70927,0	1/1:92:1,91:1:36:91:3272:-290.713,-24.0965,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:19:10,9:10:352:9:324:-23.7863,0,-26.2986	0/1:142:90,52:90:3224:52:1868:-125.653,0,-247.636	0/1:33:19,14:19:676:14:500:-35.4022,0,-51.234	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:81:1,80:1:36:80:2871:-254.927,-20.7852,0	1/1:88:0,88:0:0:88:3160:-284.607,-26.4906,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:205:1,204:1:36:204:7297:-653.157,-58.1129,0	1/1:157:0,157:0:0:157:5640:-506.968,-47.2617,0	0/1:98:50,48:50:1788:48:1724:-125.944,0,-131.702	1/1:99:0,99:0:0:99:3551:-319.773,-29.802,0	0/1:133:80,53:80:2868:53:1904:-131.585,0,-218.318	0/1:81:50,31:50:1788:31:1116:-76.3683,0,-136.819	0/1:12:7,5:7:248:5:180:-12.935,0,-19.0518	1/1:47:2,45:2:72:45:1608:-136.846,-7.31169,0	0/1:100:59,41:59:2120:41:1476:-103.009,0,-160.965	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:147:78,69:78:2804:69:2476:-178.694,0,-208.348	0/1:67:42,25:42:1508:25:900:-60.9241,0,-115.846	1/1:106:0,106:0:0:106:3808:-342.539,-31.9092,0	0/1:160:101,59:101:3578:59:2116:-142.523,0,-274.059	0/1:132:77,55:77:2751:55:1972:-137.942,0,-207.979	1/1:162:1,161:1:36:161:5771:-515.597,-45.1686,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:124:0,124:0:0:124:4433:-398.782,-37.3277,0	1/1:94:0,94:0:0:94:3368:-303.256,-28.2968,0	1/1:218:0,218:0:0:218:7828:-704.479,-65.6245,0	0/1:117:57,60:57:2039:60:2160:-159.425,0,-148.561	0/1:65:33,32:33:1184:32:1148:-84.0522,0,-87.3014	1/1:117:0,117:0:0:117:4197:-377.726,-35.2205,0	0/1:197:115,82:115:4127:82:2944:-205.858,0,-312.307	1/1:41:0,41:0:0:41:1468:-132.386,-12.3422,0	1/1:97:0,97:0:0:97:3475:-312.869,-29.1999,0	1/1:81:0,81:0:0:81:2916:-262.627,-24.3834,0	0/1:23:7,16:7:252:16:576:-44.0556,0,-16.1053	0/1:52:29,23:29:1044:23:824:-58.8288,0,-78.6212	0/1:84:54,30:54:1940:30:1080:-72.2161,0,-149.59	1/1:55:0,55:0:0:55:1980:-178.47,-16.5567,0	1/1:98:0,98:0:0:98:3524:-317.336,-29.5009,0
chr07	2174474	.	G	A	147563	PASS	AB=0.497087;ABP=3.42773;AC=134;AF=0.72043;AN=186;AO=7114;CIGAR=1X;DP=9972;DPB=9972;DPRA=0;EPP=15251.7;EPPR=6062.2;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.9889;MQMR=59.9944;NS=93;NUMALT=1;ODDS=2.40416;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253687;QR=102022;RO=2854;RPL=20;RPP=15277.6;RPPR=6070.79;RPR=7094;RUN=1;SAF=7111;SAP=15424.8;SAR=3;SRF=2853;SRP=6191.71;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:17,19:17:604:19:680:-50.6921,0,-43.8535	0/1:95:48,47:48:1699:47:1668:-121.81,0,-124.589	0/1:93:48,45:48:1712:45:1608:-117.014,0,-126.37	0/1:138:61,77:61:2183:77:2755:-206.649,0,-155.193	1/1:82:1,81:1:36:81:2896:-257.278,-21.0862,0	1/1:74:1,73:1:36:73:2615:-231.999,-18.6779,0	0/1:194:91,103:91:3256:103:3680:-273.003,0,-234.861	0/1:201:99,102:99:3527:102:3652:-268.377,0,-257.133	1/1:91:0,91:0:0:91:3246:-292.361,-27.3937,0	0/1:128:51,77:51:1828:77:2735:-207.859,0,-126.269	1/1:129:0,129:0:0:129:4609:-414.974,-38.8329,0	0/1:91:43,48:43:1527:48:1724:-128.052,0,-110.329	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	0/1:102:53,49:53:1899:49:1756:-127.619,0,-140.482	0/1:85:40,45:40:1440:45:1605:-119.152,0,-104.31	0/1:84:44,40:44:1576:40:1436:-104.251,0,-116.845	0/1:99:45,54:45:1607:54:1936:-144.714,0,-115.117	0/1:72:40,32:40:1432:32:1148:-81.9557,0,-107.503	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	0/1:252:131,121:131:4669:121:4339:-314.824,0,-344.512	1/1:217:0,217:0:0:217:7678:-691.051,-65.3235,0	0/1:114:71,42:71:2548:42:1447:-96.1425,0,-195.194	0/1:145:65,80:65:2320:80:2829:-211.2,0,-165.411	0/1:147:65,82:65:2300:82:2921:-218.873,0,-163.008	0/1:105:47,58:47:1676:58:2078:-155.682,0,-119.519	1/1:274:1,273:1:36:273:9699:-869.267,-78.8839,0	1/1:202:2,200:2:72:200:7140:-635.822,-53.9713,0	1/1:41:0,41:0:0:41:1453:-131.064,-12.3422,0	0/1:210:110,100:110:3952:100:3578:-259.01,0,-292.654	1/1:153:1,152:1:32:152:5401:-483.024,-42.8583,0	1/1:157:0,157:0:0:157:5569:-501.334,-47.2617,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:6:4,2:4:144:2:57:-3.60713,0,-11.5074	0/1:198:84,114:84:3012:114:4081:-307.87,0,-211.705	0/1:175:79,94:79:2821:94:3348:-249.099,0,-201.69	0/1:85:36,49:36:1292:49:1745:-131.746,0,-90.9962	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:195:97,98:97:3471:98:3500:-256.51,0,-253.9	0/1:42:27,15:27:964:15:540:-36.2933,0,-74.4336	0/1:173:92,81:92:3268:81:2903:-209.427,0,-242.262	0/1:102:41,61:41:1467:61:2171:-164.951,0,-101.62	0/1:55:27,28:27:942:28:1004:-74.1192,0,-68.5357	1/1:108:0,108:0:0:108:3852:-346.877,-32.5112,0	1/1:149:0,149:0:0:149:5306:-477.674,-44.8535,0	1/1:151:0,151:0:0:151:5357:-482.26,-45.4555,0	0/1:104:46,58:46:1648:58:2070:-155.264,0,-117.301	0/1:92:47,45:47:1684:45:1616:-118.035,0,-124.152	0/1:148:70,78:70:2516:78:2780:-205.889,0,-182.139	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:239:0,239:0:0:239:8513:-766.172,-71.9462,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:137:65,72:65:2328:72:2572:-190.489,0,-168.539	0/1:61:22,39:22:784:39:1396:-107.576,0,-52.5211	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:144:0,144:0:0:144:5125:-461.392,-43.3483,0	1/1:120:0,120:0:0:120:4301:-387.265,-36.1236,0	0/1:5:2,3:2:68:3:93:-7.17158,0,-4.95256	1/1:151:0,151:0:0:151:5364:-482.893,-45.4555,0	1/1:158:0,158:0:0:158:5631:-506.911,-47.5627,0	0/1:109:58,51:58:2080:51:1830:-132.168,0,-154.658	1/1:77:0,77:0:0:77:2752:-247.921,-23.1793,0	0/1:144:69,75:69:2459:75:2656:-195.937,0,-178.216	0/1:129:90,39:90:3216:39:1400:-87.4663,0,-250.828	0/1:56:33,23:33:1180:23:812:-56.5432,0,-89.6504	1/1:85:0,85:0:0:85:3013:-271.402,-25.5876,0	0/1:83:45,38:45:1616:38:1348:-96.6343,0,-120.745	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/1:105:55,50:55:1956:50:1788:-129.594,0,-144.708	0/1:89:40,49:40:1440:49:1737:-129.821,0,-103.106	1/1:242:0,242:0:0:242:8608:-774.718,-72.8493,0	0/1:183:112,71:112:4020:71:2548:-174.482,0,-306.899	0/1:171:102,69:102:3668:69:2472:-171.258,0,-278.846	1/1:119:0,119:0:0:119:4268:-384.297,-35.8226,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:135:2,133:2:68:133:4752:-421.381,-34.1813,0	1/1:89:0,89:0:0:89:3133:-282.197,-26.7917,0	1/1:206:1,205:1:36:205:7315:-654.797,-58.4139,0	0/1:88:40,48:40:1428:48:1719:-128.505,0,-102.327	0/1:79:48,31:48:1720:31:1116:-76.9703,0,-131.304	1/1:84:0,84:0:0:84:3013:-271.4,-25.2865,0	0/1:133:66,67:66:2364:67:2393:-175.589,0,-172.981	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:83:0,83:0:0:83:2963:-266.902,-24.9855,0	1/1:70:0,70:0:0:70:2502:-225.431,-21.0721,0	0/1:82:42,40:42:1504:40:1436:-104.853,0,-110.97	0/1:121:55,66:55:1951:66:2368:-176.953,0,-139.441	0/1:100:67,32:67:2400:32:1152:-73.8283,0,-186.095	1/1:63:0,63:0:0:63:2244:-202.222,-18.9649,0	1/1:117:0,117:0:0:117:4191:-377.284,-35.2205,0
chr07	2174489	.	C	T	47300.9	PASS	AB=0.498758;ABP=3.08579;AC=52;AF=0.27957;AN=186;AO=2820;CIGAR=1X;DP=9982;DPB=9982;DPRA=1.18504;EPP=6117.88;EPPR=15546.4;GTI=0;LEN=1;MEANALT=1;MQM=59.9957;MQMR=59.9968;NS=93;NUMALT=1;ODDS=3.39231;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100318;QR=253502;RO=7162;RPL=2816;RPP=6091.87;RPPR=15511.7;RPR=4;RUN=1;SAF=2817;SAP=6100.53;SAR=3;SRF=7158;SRP=15520.4;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:19,18:19:676:18:625:-45.4338,0,-50.0299	0/1:99:49,50:49:1722:50:1778:-130.498,0,-125.462	0/1:96:48,48:48:1701:48:1717:-125.916,0,-124.475	0/1:142:79,63:79:2821:63:2248:-159.837,0,-211.381	0/0:82:81,1:81:2872:1:36:0,-21.0862,-255.118	0/0:73:72,1:72:2564:1:36:0,-18.3769,-227.41	0/1:193:102,91:102:3630:91:3226:-232.461,0,-268.807	0/1:197:102,95:102:3638:95:3357:-243.042,0,-268.322	0/0:90:90,0:90:3163:0:0:0,-27.0927,-284.896	0/1:126:76,50:76:2699:50:1796:-123.993,0,-205.225	0/0:126:126,0:126:4430:0:0:0,-37.9298,-398.871	0/1:88:47,41:47:1635:41:1472:-106.285,0,-120.944	0/0:82:82,0:82:2850:0:0:0,-24.6845,-256.734	0/1:102:48,54:48:1688:54:1924:-142.732,0,-121.499	0/1:84:44,40:44:1562:40:1436:-104.251,0,-115.584	0/1:86:41,45:41:1441:45:1608:-119.122,0,-104.095	0/1:99:54,45:54:1902:45:1579:-112.596,0,-141.652	0/1:70:32,38:32:1134:38:1344:-100.185,0,-81.2951	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.682	0/1:253:122,131:122:4311:131:4609:-338.814,0,-312.006	0/0:218:218,0:218:7713:0:0:0,-65.6245,-694.209	0/1:111:41,70:41:1447:70:2488:-190.757,0,-97.1108	0/1:147:82,65:82:2892:65:2283:-161.479,0,-216.262	0/1:147:84,63:84:2991:63:2256:-159.052,0,-225.171	0/1:103:56,47:56:1992:47:1680:-120.481,0,-148.548	0/0:276:275,1:275:9726:1:32:0,-79.885,-872.101	0/0:201:199,2:199:7047:2:72:0,-53.6703,-627.459	0/0:44:44,0:44:1549:0:0:0,-13.2453,-139.7	0/1:204:99,105:99:3521:105:3729:-274.4,0,-255.689	0/0:156:156,0:156:5540:0:0:0,-46.9607,-498.728	0/0:164:164,0:164:5807:0:0:0,-49.3689,-522.748	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:5:2,3:2:63:3:108:-8.57002,0,-4.478	0/1:199:115,84:115:4047:84:2978:-208.346,0,-304.514	0/1:174:94,80:94:3347:80:2876:-206.697,0,-249.069	0/1:84:48,36:48:1663:36:1279:-90.1259,0,-124.667	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:198:102,96:102:3592:96:3427:-249.04,0,-263.885	0/1:42:15,27:15:531:27:963:-74.3427,0,-35.4786	0/1:172:79,93:79:2783:93:3318:-247.061,0,-198.933	0/1:104:61,43:61:2155:43:1531:-106.775,0,-162.907	0/1:53:28,25:28:995:25:896:-65.0058,0,-73.9094	0/0:111:111,0:111:3898:0:0:0,-33.4143,-351.014	0/0:152:152,0:152:5432:0:0:0,-45.7566,-489.011	0/0:150:150,0:150:5331:0:0:0,-45.1545,-479.897	0/1:105:58,47:58:2059:47:1682:-120.059,0,-153.973	0/1:90:45,45:45:1595:45:1603:-117.467,0,-116.747	0/1:147:75,72:75:2661:72:2572:-187.479,0,-195.484	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:247:247,0:247:8698:0:0:0,-74.3544,-782.821	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/1:138:73,65:73:2581:65:2310:-166.618,0,-190.997	0/1:60:38,22:38:1364:22:779:-52.3703,0,-104.999	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:147:147,0:147:5188:0:0:0,-44.2514,-467.061	0/0:123:123,0:123:4356:0:0:0,-37.0267,-392.214	0/1:6:3,3:3:99:3:108:-8.26899,0,-7.4304	0/0:147:147,0:147:5197:0:0:0,-44.2514,-467.87	0/0:153:153,0:153:5434:0:0:0,-46.0576,-489.191	0/1:108:52,56:52:1847:56:1994:-147.221,0,-133.998	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.113	0/1:142:75,67:75:2671:67:2386:-172.249,0,-197.889	0/1:129:40,89:40:1412:89:3160:-245.792,0,-88.5417	0/1:54:22,32:22:775:32:1135:-86.2024,0,-53.8156	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:83:38,45:38:1342:45:1608:-120.025,0,-96.0931	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:100:50,50:50:1771:50:1783:-130.649,0,-129.569	0/1:89:51,38:51:1828:38:1360:-95.9089,0,-138.009	0/0:253:253,0:253:8915:0:0:0,-76.1606,-802.34	0/1:183:72,111:72:2558:111:3983:-303.57,0,-175.381	0/1:164:71,93:71:2508:93:3281:-246.14,0,-176.602	0/0:118:118,0:118:4176:0:0:0,-35.5215,-376.022	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:134:132,2:132:4695:2:72:0,-33.5013,-415.874	0/0:91:91,0:91:3208:0:0:0,-27.3937,-288.941	0/0:210:209,1:209:7425:1:36:0,-59.618,-664.687	0/1:89:48,41:48:1701:41:1436:-102.741,0,-126.582	0/1:81:32,49:32:1124:49:1752:-133.581,0,-77.0818	0/0:81:81,0:81:2859:0:0:0,-24.3834,-257.547	0/1:132:66,66:66:2312:66:2336:-170.762,0,-168.604	0/0:38:38,0:38:1337:0:0:0,-11.4391,-120.628	0/0:85:85,0:85:3015:0:0:0,-25.5875,-271.58	0/0:68:68,0:68:2381:0:0:0,-20.47,-214.545	0/1:83:42,41:42:1491:41:1472:-107.791,0,-109.498	0/1:116:64,52:64:2296:52:1823:-129.428,0,-171.982	0/1:100:32,68:32:1091:68:2440:-189.752,0,-68.3861	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.221	0/0:119:119,0:119:4197:0:0:0,-35.8226,-377.91
chr07	2176095	.	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chr07	2306901	.	T	A	34393.5	PASS	AB=0.48482;ABP=11.6464;AC=54;AF=0.287234;AN=188;AO=2101;CIGAR=1X;DP=7561;DPB=7561;DPRA=1.09254;EPP=4513.31;EPPR=10997.9;GTI=1;LEN=1;MEANALT=1.05263;MQM=59.9786;MQMR=59.7027;NS=94;NUMALT=1;ODDS=6.08378;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73809;QR=192085;RO=5456;RPL=12;RPP=4461.64;RPPR=10897.7;RPR=2089;RUN=1;SAF=6;SAP=4513.31;SAR=2095;SRF=14;SRP=11729.3;SRR=5442;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:27,8:27:943:8:284:-15.3673,0,-74.3767	0/1:76:49,27:49:1731:27:955:-63.3866,0,-133.132	0/1:91:60,31:60:2116:31:1094:-71.3758,0,-163.297	0/1:107:66,41:66:2290:41:1429:-96.6884,0,-174.144	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.524	0/0:45:45,0:45:1574:0:0:0,-13.5463,-141.945	0/1:58:42,16:42:1488:16:558:-33.0867,0,-116.752	0/1:94:41,53:41:1443:53:1891:-142.171,0,-101.86	0/0:53:53,0:53:1860:0:0:0,-15.9546,-167.631	0/1:77:33,44:33:1144:44:1520:-113.907,0,-80.0792	0/0:103:103,0:103:3632:0:0:0,-31.0061,-326.996	0/1:81:42,39:42:1491:39:1339:-96.4184,0,-110.055	0/0:83:83,0:83:2939:0:0:0,-24.9855,-264.738	0/1:122:57,64:57:1992:64:2188:-160.397,0,-142.755	0/1:79:32,47:32:1131:47:1654:-125.365,0,-78.3131	0/1:81:42,39:42:1461:39:1377:-99.8432,0,-106.841	0/1:62:30,32:30:1055:32:1140:-84.2453,0,-76.5962	0/1:50:28,22:28:996:22:788:-56.1933,0,-74.887	0/0:53:53,0:53:1855:0:0:0,-15.9546,-167.118	0/1:178:93,85:93:3250:85:3000:-216.647,0,-239.049	0/0:94:94,0:94:3311:0:0:0,-28.2968,-298.135	0/1:85:23,62:23:802:62:2173:-170.24,0,-46.909	0/1:53:32,21:32:1128:21:739:-50.8778,0,-85.8737	0/1:86:56,30:56:1964:30:1068:-70.5435,0,-151.015	0/1:38:21,17:21:730:17:608:-43.6129,0,-54.5803	0/0:171:171,0:171:6036:0:0:0,-51.4761,-543.283	0/0:169:169,0:169:5966:0:0:0,-50.8741,-537.02	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:181:106,75:106:3754:75:2671:-186.149,0,-283.515	0/0:116:114,2:114:4049:2:56:0,-29.6012,-359.237	0/0:87:87,0:87:3000:0:0:0,-26.1896,-270.228	0/1:5:2,3:2:63:3:108:-8.57002,0,-4.478	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.95	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8895	0/1:13:4,9:4:140:9:322:-25.4108,0,-9.03119	0/1:228:101,127:101:3558:127:4444:-331.499,0,-251.789	0/1:114:61,53:61:2149:53:1883:-135.431,0,-159.358	0/1:115:66,49:66:2303:49:1735:-121.815,0,-172.911	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:85:50,35:50:1708:35:1224:-84.8733,0,-128.409	0/1:65:27,38:27:948:38:1305:-98.1773,0,-66.0511	0/1:71:43,28:43:1508:28:985:-67.5884,0,-114.571	0/1:77:40,37:40:1420:37:1312:-95.2024,0,-104.916	0/1:64:34,30:34:1183:30:1049:-75.452,0,-87.4942	0/0:63:63,0:63:2231:0:0:0,-18.9649,-200.996	0/0:105:105,0:105:3731:0:0:0,-31.6081,-335.965	0/0:97:97,0:97:3401:0:0:0,-29.1999,-306.307	0/1:101:46,55:46:1619:55:1910:-141.767,0,-115.574	0/1:91:40,51:40:1428:51:1811:-135.877,0,-101.104	0/1:48:33,15:33:1152:15:516:-32.314,0,-89.5367	0/0:13:13,0:13:442:0:0:0,-3.91339,-40.1016	0/0:134:134,0:134:4710:0:0:0,-40.338,-424.047	0/0:50:50,0:50:1754:0:0:0,-15.0515,-158.009	0/1:12:4,8:4:140:8:280:-21.9269,0,-9.33222	0/1:58:31,27:31:1091:27:959:-69.1657,0,-81.0216	0/1:26:14,12:14:496:12:432:-31.3944,0,-37.1475	1/1:4:0,4:0:0:4:129:-11.9243,-1.20412,0	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:62:62,0:62:2174:0:0:0,-18.6639,-195.918	0/0:159:159,0:159:5624:0:0:0,-47.8638,-505.902	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:110:109,1:109:3857:1:36:0,-29.516,-343.725	0/0:142:141,0:141:4938:0:0:0,-42.4452,-444.207	0/1:53:35,18:35:1248:18:631:-41.1611,0,-96.5359	0/0:65:65,0:65:2281:0:0:0,-19.5669,-205.547	0/1:90:53,37:53:1876:37:1292:-89.4855,0,-142.024	0/1:96:28,68:28:955:68:2358:-183.577,0,-57.3575	0/1:83:38,45:38:1340:45:1600:-119.305,0,-95.9099	0/0:62:62,0:62:2193:0:0:0,-18.6639,-197.596	0/1:80:27,53:27:951:53:1843:-142.065,0,-61.5515	0/1:10:3,7:3:104:7:248:-19.6539,0,-6.69251	0/1:104:57,47:57:2003:47:1648:-117.299,0,-149.217	0/1:57:35,22:35:1203:22:773:-52.7308,0,-91.4103	0/0:104:104,0:104:3661:0:0:0,-31.3071,-329.675	0/1:113:59,54:59:2107:54:1910:-138.159,0,-155.558	0/1:78:57,20:57:1998:20:716:-41.2287,0,-156.546	0/0:109:108,1:108:3803:1:21:0,-30.7123,-340.367	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1246	0/0:98:98,0:98:3476:0:0:0,-29.5009,-312.9	0/0:97:97,0:97:3401:0:0:0,-29.1999,-306.301	0/0:168:168,0:168:5929:0:0:0,-50.573,-533.718	0/1:127:70,57:70:2475:57:2025:-144.29,0,-184.359	0/1:67:32,35:32:1130:35:1224:-90.2925,0,-81.8332	0/0:89:88,1:88:3107:1:36:0,-23.1934,-276.184	0/1:194:92,101:92:3275:101:3576:-263.59,0,-236.503	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:95:95,0:95:3344:0:0:0,-28.5978,-300.98	0/0:91:91,0:91:3200:0:0:0,-27.3937,-288.13	0/1:89:43,46:43:1527:46:1635:-120.646,0,-110.931	0/1:196:94,102:94:3294:102:3526:-258.549,0,-237.619	0/1:66:20,46:20:703:46:1635:-127.57,0,-43.7232	0/0:69:69,0:69:2417:0:0:0,-20.7711,-217.784	0/0:106:106,0:106:3743:0:0:0,-31.9092,-336.979
chr07	2306910	.	T	C	114877	PASS	AB=0.507023;ABP=4.87078;AC=134;AF=0.712766;AN=188;AO=5466;CIGAR=1X;DP=7619;DPB=7619;DPRA=27.2975;EPP=11027.9;EPPR=4613.19;GTI=1;LEN=1;MEANALT=1.06452;MQM=59.6751;MQMR=59.9856;NS=94;NUMALT=1;ODDS=5.31698;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192969;QR=76620;RO=2147;RPL=100;RPP=11019.6;RPPR=4613.19;RPR=5366;RUN=1;SAF=3;SAP=11846.2;SAR=5463;SRF=0;SRP=4665.16;SRR=2147;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:9,27:9:324:27:968:-76.6003,0,-18.6688	0/1:78:30,48:30:1067:48:1711:-130.791,0,-72.8527	0/1:92:31,61:31:1108:61:2155:-166.508,0,-72.3362	0/1:107:41,66:41:1459:66:2317:-176.538,0,-99.3927	1/1:45:0,45:0:0:45:1616:-145.725,-13.5464,0	1/1:45:1,44:1:36:44:1557:-136.817,-9.94808,0	0/1:57:17,40:17:604:40:1408:-109.858,0,-37.5319	0/1:96:55,41:55:1963:41:1468:-103.509,0,-148.046	1/1:48:0,48:0:0:48:1680:-151.378,-14.4494,0	0/1:79:45,34:45:1620:34:1203:-84.7904,0,-122.309	1/1:103:0,103:0:0:103:3651:-328.701,-31.0061,0	0/1:81:40,41:40:1436:41:1434:-104.926,0,-105.154	1/1:80:0,80:0:0:80:2793:-251.602,-24.0824,0	0/1:128:70,58:70:2500:58:2002:-141.901,0,-186.721	0/1:80:49,31:49:1756:31:1099:-75.1371,0,-134.242	0/1:84:41,43:41:1463:43:1492:-108.725,0,-106.679	0/1:63:33,30:33:1176:30:1027:-73.7686,0,-87.1829	0/1:50:22,28:22:788:28:996:-74.887,0,-56.1933	1/1:56:0,56:0:0:56:1979:-178.269,-16.8577,0	0/1:181:86,95:86:3076:95:3372:-249.201,0,-222.582	1/1:97:0,97:0:0:97:3377:-304.115,-29.1999,0	0/1:83:60,22:60:2131:22:784:-45.877,0,-167.053	0/1:52:21,31:21:752:31:1108:-84.3774,0,-52.3527	0/1:84:31,53:31:1116:53:1847:-141.091,0,-75.4652	0/1:40:18,22:18:633:22:780:-58.4818,0,-45.2539	1/1:171:0,170:0:0:170:6016:-541.162,-51.1751,0	1/1:168:0,168:0:0:168:5919:-532.793,-50.573,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:184:78,106:78:2779:106:3756:-282.84,0,-194.962	1/1:115:2,113:2:72:113:3998:-353.136,-27.7817,0	1/1:90:0,90:0:0:90:3175:-285.96,-27.0927,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:19:0,18:0:0:18:640:-57.5651,-5.41854,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:7:0,7:0:0:7:248:-22.6454,-2.10721,0	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.5925	0/1:229:129,100:129:4599:100:3547:-250.489,0,-345.14	0/1:113:52,61:52:1849:61:2175:-161.99,0,-132.672	0/1:112:49,62:49:1743:62:2173:-162.062,0,-123.38	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:88:35,53:35:1252:53:1857:-140.908,0,-86.4944	0/1:64:38,26:38:1342:26:920:-63.8373,0,-101.813	0/1:71:29,42:29:1036:42:1504:-114.22,0,-72.1808	0/1:76:37,39:37:1301:39:1373:-100.986,0,-94.511	0/1:66:30,36:30:1063:36:1275:-95.1676,0,-76.1128	1/1:66:0,66:0:0:66:2342:-210.981,-19.868,0	1/1:108:0,108:0:0:108:3821:-344.054,-32.5112,0	1/1:95:0,95:0:0:95:3378:-304.234,-28.5979,0	0/1:104:56,47:56:1999:47:1652:-117.621,0,-148.856	0/1:90:51,39:51:1828:39:1384:-97.6052,0,-137.708	0/1:48:16,32:16:567:32:1122:-86.8362,0,-36.9113	1/1:13:0,13:0:0:13:445:-40.3721,-3.91339,0	1/1:141:0,141:0:0:141:4986:-448.83,-42.4452,0	1/1:55:0,55:0:0:55:1932:-174.041,-16.5567,0	0/1:12:8,4:8:288:4:136:-8.96318,0,-22.655	0/1:59:28,31:28:996:31:1084:-80.0929,0,-72.1941	0/1:25:11,14:11:392:14:486:-36.5422,0,-28.0943	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0458	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:65:0,65:0:0:65:2311:-208.237,-19.567,0	1/1:159:0,159:0:0:159:5578:-502.007,-47.8638,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:113:0,113:0:0:113:4032:-363.06,-34.0164,0	1/1:141:0,141:0:0:141:5000:-450.14,-42.4452,0	0/1:50:17,33:17:608:33:1173:-90.6896,0,-40.0005	1/1:66:0,66:0:0:66:2330:-209.954,-19.868,0	0/1:95:39,56:39:1371:56:1996:-151.315,0,-95.0899	0/1:95:66,29:66:2367:29:1036:-64.9561,0,-184.69	0/1:85:46,39:46:1640:39:1345:-95.7462,0,-122.301	1/1:66:0,66:0:0:66:2342:-210.955,-19.868,0	0/1:84:55,29:55:1968:29:1024:-66.9157,0,-152.109	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:101:48,53:48:1724:53:1855:-136.812,0,-125.041	0/1:60:24,36:24:856:36:1288:-98.1618,0,-59.2993	1/1:107:0,107:0:0:107:3797:-340.975,-32.2102,0	0/1:117:56,61:56:2012:61:2150:-158.222,0,-146.13	0/1:79:23,56:23:811:56:1980:-154.69,0,-49.5286	1/1:112:1,111:1:36:111:3947:-351.783,-30.1171,0	1/1:9:0,9:0:0:9:324:-29.4881,-2.70927,0	1/1:95:1,93:1:36:93:3303:-293.737,-25.0584,0	1/1:100:0,100:0:0:100:3580:-322.396,-30.103,0	1/1:169:0,169:0:0:169:5992:-539.373,-50.8741,0	0/1:126:60,66:60:2152:66:2347:-172.838,0,-156.017	0/1:67:36,31:36:1292:31:1087:-77.9661,0,-96.4148	1/1:88:1,87:1:36:87:3062:-272.206,-22.8924,0	0/1:187:101,86:101:3612:86:3043:-217.8,0,-268.994	1/1:47:0,47:0:0:47:1635:-147.435,-14.1484,0	1/1:97:0,97:0:0:97:3388:-305.005,-29.1999,0	1/1:91:0,91:0:0:91:3185:-286.787,-27.3937,0	0/1:89:48,41:48:1712:41:1425:-101.749,0,-127.574	0/1:198:104,94:104:3727:94:3253:-233.345,0,-276.026	0/1:65:46,19:46:1614:19:676:-41.5987,0,-125.981	1/1:72:0,72:0:0:72:2543:-229.111,-21.6742,0	1/1:105:0,105:0:0:105:3662:-329.732,-31.6082,0
chr07	2306937	.	GCTC	ACTT,ACTC	164975	PASS	AB=0.517265,0.479991;ABP=14.3324,18.2176;AC=134,54;AF=0.712766,0.287234;AN=188;AO=5580,2106;CIGAR=1X2M1X,1X3M;DP=7712;DPB=7712;DPRA=20.7204,1.12105;EPP=11774.9,4550.11;EPPR=5.18177;GTI=1;LEN=4,1;MEANALT=1.86022,2.22807;MQM=59.6375,59.9791;MQMR=60;NS=94;NUMALT=2;ODDS=6.89356;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=198035,75405;QR=36;RO=1;RPL=5541,2103;RPP=11783.4,4550.11;RPPR=5.18177;RPR=39,3;RUN=1,1;SAF=1,0;SAP=12111.1,4576.13;SAR=5579,2106;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,28,10:0:0:28,10:984,341:-108.02,-28.0075,-19.5786,-80.3563,0,-77.346	1/2:81:0,52,29:0:0:52,29:1848,1044:-236.048,-85.5368,-69.8832,-150.87,0,-142.14	1/2:94:0,62,32:0:0:62,32:2182,1148:-271.606,-93.9969,-75.333,-177.965,0,-168.332	1/2:109:0,70,39:0:0:70,39:2496,1395:-317.555,-114.106,-93.0337,-203.806,0,-192.066	1/1:33:0,33,0:0:0:33,0:1170,0:-105.606,-9.93399,0,-105.606,-9.93399,-105.606	1/1:45:0,45,0:0:0:45,0:1600,0:-144.278,-13.5464,0,-144.278,-13.5464,-144.278	1/2:57:0,40,17:0:0:40,17:1429,597:-165.452,-48.9386,-36.8974,-116.867,0,-111.749	1/2:98:0,42,56:0:0:42,56:1502,2001:-285.913,-163.504,-150.861,-122.767,0,-105.909	1/1:51:0,51,0:0:0:51,0:1795,0:-161.801,-15.3525,0,-161.801,-15.3525,-161.801	1/2:80:0,36,44:0:0:36,44:1280,1584:-233.908,-129.606,-118.769,-104.66,0,-91.4143	1/1:104:0,103,0:0:0:103,0:3682,0:-331.226,-31.0061,0,-331.226,-31.0061,-331.226	1/2:84:0,43,41:0:0:43,41:1521,1476:-244.63,-120.794,-107.85,-124.193,0,-111.851	1/1:83:0,82,0:0:0:82,0:2882,0:-259.258,-24.6845,0,-259.258,-24.6845,-259.258	1/2:128:0,60,68:0:0:60,68:2122,2425:-370.845,-198.035,-179.973,-173.165,0,-152.695	1/2:81:0,33,48:0:0:33,48:1164,1728:-236.115,-141.356,-131.422,-95.1145,0,-80.6651	1/2:85:0,46,39:0:0:46,39:1615,1396:-244.851,-114.199,-100.352,-131.006,0,-119.266	1/2:64:0,31,33:0:0:31,33:1081,1188:-185.203,-97.2946,-87.9627,-88.2626,0,-78.3286	1/2:50:0,29,21:0:0:29,21:1035,752:-146.044,-61.6846,-52.9548,-84.7171,0,-78.3955	1/1:55:0,55,0:0:0:55,0:1965,0:-177.01,-16.5567,0,-177.01,-16.5567,-177.01	1/2:186:0,98,87:0:0:98,87:3479,3111:-537.154,-253.707,-224.206,-283.483,0,-257.294	1/1:99:0,98,0:0:0:98,0:3438,0:-309.015,-29.5009,0,-309.015,-29.5009,-309.015	1/2:83:0,23,60:0:0:23,60:825,2109:-239.303,-172.011,-165.087,-67.6492,0,-49.5874	1/2:53:0,32,20:0:0:32,20:1150,720:-152.644,-58.8244,-49.1914,-93.8948,0,-87.8742	1/2:86:0,55,30:0:0:55,30:1957,1080:-247.678,-88.2095,-71.6528,-159.553,0,-150.522	1/2:37:0,20,17:0:0:20,17:713,612:-108.414,-50.2959,-44.2753,-58.4759,0,-53.3584	1/1:179:0,177,1:0:0:177,1:6256,36:-562.737,-53.2823,0,-559.799,-50.31,-559.498	1/1:175:0,175,0:0:0:175,0:6170,0:-555.371,-52.6803,0,-555.371,-52.6803,-555.371	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/2:180:0,105,75:0:0:105,75:3728,2700:-524.405,-220.666,-189.058,-304.096,0,-281.519	1/1:118:0,117,1:0:0:117,1:4161,36:-374.269,-35.2205,0,-371.331,-31.9233,-371.03	1/1:91:0,90,0:0:0:90,0:3179,0:-285.969,-27.0927,0,-285.969,-27.0927,-285.969	1/2:5:0,2,3:0:0:2,3:71,108:-14.9552,-9.17208,-8.57002,-6.14,0,-5.23691	1/1:20:0,20,0:0:0:20,0:712,0:-64.4022,-6.0206,0,-64.4022,-6.0206,-64.4022	1/1:5:0,5,0:0:0:5,0:176,0:-16.0962,-1.50515,0,-16.0962,-1.50515,-16.0962	1/1:9:0,9,0:0:0:9,0:304,0:-27.6803,-2.70927,0,-27.6803,-2.70927,-27.6803	1/2:13:0,4,9:0:0:4,9:144,324:-38.5463,-26.7966,-25.5925,-12.1095,0,-9.40023	1/2:232:1,103,126:1:36:103,126:3665,4522:-664.308,-365.952,-337.883,-295.749,0,-260.757	1/2:116:0,66,50:0:0:66,50:2336,1788:-336.418,-146.151,-126.283,-190.623,0,-175.571	1/2:114:0,67,47:0:0:67,47:2397,1692:-333.848,-138.418,-118.249,-195.789,0,-181.64	1/2:5:0,1,4:0:0:1,4:36,140:-14.6799,-11.7405,-11.4394,-3.29724,0,-2.09312	1/2:87:0,53,34:0:0:53,34:1880,1224:-253.389,-100.232,-84.2774,-153.515,0,-143.28	1/2:65:0,28,36:0:0:28,36:994,1292:-186.362,-105.387,-96.958,-80.9715,0,-70.1344	1/2:71:0,41,29:0:0:41,29:1449,1036:-202.507,-84.6092,-72.2669,-118.037,0,-109.308	1/2:76:0,39,36:0:0:39,36:1396,1284:-218.506,-104.667,-92.9264,-113.837,0,-103	1/2:66:0,36,30:0:0:36,30:1286,1076:-192.952,-88.122,-77.2849,-105.187,0,-96.1566	1/1:63:0,63,0:0:0:63,0:2248,0:-202.553,-18.9649,0,-202.553,-18.9649,-202.553	1/1:100:0,99,0:0:0:99,0:3489,0:-313.872,-29.802,0,-313.872,-29.802,-313.872	1/1:96:0,96,0:0:0:96,0:3417,0:-307.739,-28.8989,0,-307.739,-28.8989,-307.739	1/2:104:0,47,57:0:0:47,57:1673,2044:-303.405,-167.073,-152.925,-136.689,0,-119.53	1/2:93:0,42,51:0:0:42,51:1504,1832:-272.189,-149.808,-137.165,-122.739,0,-107.386	1/2:47:0,31,16:0:0:31,16:1085,572:-135.266,-46.9969,-37.665,-88.6242,0,-83.8077	1/1:13:0,13,0:0:0:13,0:456,0:-41.3694,-3.91339,0,-41.3694,-3.91339,-41.3694	1/1:133:0,133,0:0:0:133,0:4707,0:-423.622,-40.037,0,-423.622,-40.037,-423.622	1/1:55:0,55,0:0:0:55,0:1953,0:-175.914,-16.5567,0,-175.914,-16.5567,-175.914	1/2:11:0,4,7:0:0:4,7:144,246:-32.1271,-20.3744,-19.1702,-12.1095,0,-10.0023	1/2:56:0,29,27:0:0:29,27:1017,959:-161.245,-78.4976,-69.7677,-83.1006,0,-74.9728	1/2:26:0,15,11: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chr07	2306949	.	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chr07	2372691	.	G	C	71951.6	PASS	AB=0.521632;ABP=27.8125;AC=53;AF=0.281915;AN=188;AO=3199;CIGAR=1X;DP=10743;DPB=10743;DPRA=1.13953;EPP=46.4594;EPPR=119.275;GTI=0;LEN=1;MEANALT=1.13333;MQM=59.9756;MQMR=59.9954;NS=94;NUMALT=1;ODDS=4.65875;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112381;QR=266063;RO=7531;RPL=3198;RPP=6940.87;RPPR=16243.6;RPR=1;RUN=1;SAF=1472;SAP=47.1491;SAR=1727;SRF=3435;SRP=128.991;SRR=4096;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:24,23:24:848:23:784:-56.3602,0,-62.1317	0/1:154:65,88:65:2303:88:3101:-232.899,0,-161.114	0/1:174:86,88:86:3068:88:3098:-226.667,0,-223.97	0/1:215:104,111:104:3696:111:3879:-284.587,0,-268.124	0/0:80:78,1:78:2735:1:36:0,-20.468,-242.868	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/1:132:74,58:74:2609:58:2066:-146.475,0,-195.322	0/1:184:96,88:96:3388:88:3070:-221.137,0,-249.747	0/0:144:143,1:143:5048:1:36:0,-39.75,-450.87	0/1:75:26,49:26:924:49:1752:-135.387,0,-60.9004	0/0:130:130,0:130:4535:0:0:0,-39.1339,-408.232	0/1:155:72,83:72:2537:83:2912:-215.654,0,-181.922	0/0:164:164,0:164:5807:0:0:0,-49.3689,-522.748	0/1:149:75,74:75:2639:74:2591:-188.585,0,-192.903	0/1:146:62,84:62:2211:84:2924:-219.442,0,-155.304	0/1:139:59,80:59:2078:80:2801:-210.486,0,-145.447	0/1:152:72,80:72:2557:80:2788:-205.403,0,-184.623	0/1:115:54,60:54:1873:60:2086:-153.371,0,-134.207	0/0:99:99,0:99:3516:0:0:0,-29.802,-316.65	0/1:163:79,84:79:2827:84:2989:-220.174,0,-205.6	0/0:189:186,3:186:6560:3:108:0,-46.8195,-580.414	0/1:53:14,39:14:500:39:1381:-108.632,0,-29.3816	0/1:79:42,37:42:1481:37:1307:-94.1494,0,-109.801	0/1:110:64,46:64:2279:46:1636:-114.415,0,-172.258	0/1:68:34,34:34:1202:34:1203:-88.1056,0,-88.0142	0/0:214:214,0:214:7572:0:0:0,-64.4204,-681.527	0/0:212:211,0:211:7508:0:0:0,-63.5173,-675.406	0/0:87:87,0:87:3056:0:0:0,-26.1896,-275.271	0/1:178:87,91:87:3057:91:3180:-232.84,0,-221.778	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/0:98:97,0:97:3403:0:0:0,-29.1999,-306.276	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:10:6,4:6:212:4:135:-9.47221,0,-16.4145	0/1:354:180,173:180:6351:173:6082:-440.867,0,-465.066	0/1:78:40,38:40:1424:38:1339:-97.3289,0,-104.977	0/1:134:57,77:57:2036:77:2713:-204.076,0,-143.174	0/1:5:3,2:3:108:2:68:-4.95062,0,-8.57002	0/1:144:82,61:82:2888:61:2138:-149.278,0,-216.747	0/1:94:50,44:50:1764:44:1527:-109.422,0,-130.744	0/1:121:65,56:65:2285:56:1961:-140.336,0,-169.482	0/1:154:79,75:79:2768:75:2644:-191.848,0,-203.004	0/1:126:57,69:57:1994:69:2443:-182.196,0,-141.803	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.099	0/0:161:161,0:161:5737:0:0:0,-48.4658,-516.448	0/0:157:157,0:157:5519:0:0:0,-47.2617,-496.842	0/1:60:28,32:28:1004:32:1125:-83.4944,0,-72.6141	0/1:123:72,51:72:2537:51:1814:-126.513,0,-191.554	0/1:130:60,70:60:2135:70:2476:-183.959,0,-153.284	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:181:178,3:178:6278:3:108:0,-44.4113,-555.044	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:136:66,70:66:2336:70:2481:-182.593,0,-169.558	0/1:49:23,26:23:828:26:894:-66.0189,0,-60.0936	0/1:2:1,1:1:36:1:27:-2.09772,0,-2.99621	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.887	0/0:171:171,0:171:6020:0:0:0,-51.4761,-541.912	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:137:137,0:137:4864:0:0:0,-41.2411,-437.913	0/0:167:164,3:164:5803:3:104:0,-40.5692,-512.684	0/1:49:23,26:23:800:26:919:-68.2757,0,-57.5653	0/0:82:82,0:82:2858:0:0:0,-24.6845,-257.456	0/1:157:77,80:77:2720:80:2844:-208.935,0,-197.781	0/1:108:43,65:43:1535:65:2317:-176.278,0,-105.931	0/1:78:35,43:35:1229:43:1469:-109.015,0,-87.4315	0/0:90:90,0:90:3183:0:0:0,-27.0927,-286.694	0/1:173:81,92:81:2820:92:3196:-235.788,0,-201.961	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.551	0/1:105:37,68:37:1303:68:2382:-183.028,0,-85.9624	0/0:199:197,0:197:6969:0:0:0,-59.3029,-626.939	0/1:163:82,80:82:2897:80:2774:-200.862,0,-211.929	0/1:99:38,61:38:1339:61:2187:-167.293,0,-91.0073	0/0:151:151,0:151:5366:0:0:0,-45.4555,-483.076	0/0:12:12,0:12:404:0:0:0,-3.61236,-36.6817	0/0:125:121,4:121:4266:4:119:0,-26.6238,-373.116	0/0:134:134,0:134:4719:0:0:0,-40.338,-424.875	0/0:187:186,1:186:6519:1:32:0,-53.0933,-583.605	0/1:146:75,71:75:2679:71:2478:-179.323,0,-197.404	0/1:136:56,80:56:1967:80:2810:-212.199,0,-136.365	0/0:187:187,0:187:6629:0:0:0,-56.2926,-596.696	0/1:268:141,126:141:4981:126:4436:-318.678,0,-367.709	0/0:65:65,0:65:2278:0:0:0,-19.5669,-205.282	0/0:146:145,0:145:5141:0:0:0,-43.6493,-462.473	0/0:144:144,0:144:5065:0:0:0,-43.3483,-456.001	0/1:101:49,52:49:1731:52:1844:-135.836,0,-125.67	0/1:152:65,87:65:2302:87:3079:-231.584,0,-161.684	0/1:126:40,86:40:1410:86:2972:-229.778,0,-89.266	0/0:97:97,0:97:3374:0:0:0,-29.1999,-303.877	0/0:225:225,0:225:7926:0:0:0,-67.7317,-713.379
chr07	2375213	.	C	A	84939.9	PASS	AB=0.437626;ABP=136.828;AC=135;AF=0.725806;AN=186;AO=4238;CIGAR=1X;DP=6487;DPB=6487;DPRA=14.0913;EPP=9179.67;EPPR=4849.77;GTI=7;LEN=1;MEANALT=1.03261;MQM=59.9712;MQMR=59.9621;NS=93;NUMALT=1;ODDS=0.922872;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151130;QR=79944;RO=2244;RPL=3;RPP=9179.67;RPPR=4841.11;RPR=4235;RUN=1;SAF=0;SAP=9205.71;SAR=4238;SRF=1;SRP=4867.11;SRR=2243;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:99:58,41:58:2080:41:1460:-101.894,0,-157.668	0/1:56:30,26:30:1076:26:932:-67.3412,0,-80.2952	0/1:130:96,34:96:3399:34:1216:-70.6127,0,-266.988	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:143:86,57:86:3076:57:2043:-141.094,0,-234.018	0/1:94:57,37:57:2030:37:1324:-91.1653,0,-154.674	1/1:73:0,73:0:0:73:2624:-236.405,-21.9752,0	0/1:107:75,32:75:2669:32:1152:-71.7799,0,-208.244	1/1:62:0,62:0:0:62:2204:-198.623,-18.6639,0	0/1:72:29,43:29:1021:43:1543:-117.489,0,-70.5261	1/1:95:0,95:0:0:95:3377:-304.146,-28.5979,0	0/1:50:30,20:30:1072:20:707:-48.9031,0,-81.741	0/1:94:55,39:55:1961:39:1404:-98.3625,0,-148.467	0/1:68:44,24:44:1559:24:860:-57.2518,0,-120.131	0/1:72:44,28:44:1580:28:992:-67.9202,0,-120.817	0/1:97:49,48:49:1732:48:1702:-124.26,0,-126.962	1/1:49:0,49:0:0:49:1749:-157.693,-14.7505,0	0/1:81:43,38:43:1535:38:1323:-94.9826,0,-114.059	1/1:112:0,112:0:0:112:3972:-357.672,-33.7154,0	0/1:18:4,14:4:135:14:500:-39.9176,0,-7.04457	0/1:50:30,20:30:1080:20:708:-48.9941,0,-82.4618	0/1:154:88,66:88:3152:66:2342:-164.677,0,-237.547	0/1:18:2,16:2:72:16:557:-45.037,0,-1.41818	1/1:193:4,189:4:144:189:6767:-595.783,-44.7852,0	1/1:151:0,151:0:0:151:5432:-489.006,-45.4555,0	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0	0/1:149:101,48:101:3597:48:1706:-108.971,0,-279.083	1/1:107:5,102:5:176:102:3614:-309.28,-16.0252,0	1/1:73:0,73:0:0:73:2580:-232.431,-21.9752,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:271:130,141:130:4642:141:5018:-370.187,0,-336.363	0/1:89:47,42:47:1692:42:1499:-108.412,0,-125.775	0/1:80:38,42:38:1336:42:1472:-108.689,0,-96.4548	.:.:.:.:.:.:.:.	0/1:98:73,25:73:2585:25:866:-48.7504,0,-203.397	0/1:39:15,24:15:536:24:864:-66.3424,0,-36.8346	0/1:26:14,12:14:500:12:413:-29.671,0,-37.5094	0/1:98:56,42:56:1999:42:1512:-106.874,0,-150.682	0/1:74:47,27:47:1664:27:972:-65.5217,0,-127.771	1/1:62:0,62:0:0:62:2201:-198.337,-18.6639,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:44:0,44:0:0:44:1571:-141.681,-13.2453,0	0/1:104:54,50:54:1902:50:1776:-128.813,0,-139.957	0/1:100:60,40:60:2140:40:1436:-99.4347,0,-162.765	0/1:71:51,20:51:1824:20:707:-42.5815,0,-143.068	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/1:91:43,48:43:1515:48:1722:-127.867,0,-109.249	0/1:22:12,10:12:413:10:356:-25.7586,0,-30.8752	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:34:0,34:0:0:34:1194:-107.761,-10.235,0	1/1:110:0,110:0:0:110:3922:-353.083,-33.1133,0	0/1:2:1,1:1:36:1:27:-2.09772,0,-2.99621	1/1:92:0,91:0:0:91:3233:-290.831,-27.3937,0	1/1:92:2,90:2:72:90:3210:-282.286,-20.858,0	0/1:79:21,58:21:756:58:2082:-163.869,0,-44.4558	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	0/1:157:93,64:93:3323:64:2280:-158.194,0,-252.026	0/1:65:50,15:50:1792:15:536:-29.0079,0,-141.996	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:94:26,68:26:919:68:2429:-190.567,0,-54.7293	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:75:51,24:51:1828:24:864:-55.4769,0,-142.224	1/1:114:0,114:0:0:114:4077:-367.115,-34.3174,0	0/1:101:70,31:70:2508:31:1112:-69.9873,0,-195.568	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:91:0,91:0:0:91:3256:-293.26,-27.3937,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:51:1,50:1:36:50:1800:-158.684,-11.7543,0	1/1:46:0,46:0:0:46:1633:-147.257,-13.8474,0	1/1:30:0,30:0:0:30:1080:-97.5109,-9.0309,0	0/1:146:58,87:58:2059:87:3106:-235.757,0,-141.572	0/1:73:42,31:42:1503:31:1101:-77.4242,0,-113.589	1/1:126:0,123:0:0:123:4381:-394.113,-37.0267,0	0/1:190:96,94:96:3420:94:3353:-244.79,0,-250.817	1/1:46:0,46:0:0:46:1630:-146.987,-13.8474,0	1/1:73:0,73:0:0:73:2611:-235.237,-21.9752,0	1/1:82:0,82:0:0:82:2897:-260.965,-24.6845,0	0/1:30:17,13:17:604:13:453:-32.0687,0,-45.6597	0/1:77:38,39:38:1334:39:1404:-103.48,0,-97.179	0/1:97:69,28:69:2456:28:1000:-61.1155,0,-192.095	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:121:1,120:1:36:120:4254:-379.441,-32.8264,0
chr07	2375248	.	G	T	40039.5	PASS	AB=0.562637;ABP=142.562;AC=49;AF=0.263441;AN=186;AO=2315;CIGAR=1X;DP=6671;DPB=6671;DPRA=1.59298;EPP=5029.97;EPPR=9461.94;GTI=7;LEN=1;MEANALT=1;MQM=59.9508;MQMR=59.9803;NS=93;NUMALT=1;ODDS=0.654089;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82704;QR=156005;RO=4356;RPL=2315;RPP=5029.97;RPPR=9461.94;RPR=0;RUN=1;SAF=0;SAP=5029.97;SAR=2315;SRF=0;SRP=9461.94;SRR=4356;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:101:42,59:42:1512:59:2090:-157.962,0,-105.971	0/1:55:25,30:25:900:30:1064:-79.515,0,-64.7644	0/1:132:34,98:34:1208:98:3509:-276.282,0,-69.2901	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:151:61,90:61:2168:90:3202:-242.937,0,-149.932	0/1:96:37,59:37:1332:59:2120:-162.17,0,-91.2835	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.174	0/1:108:33,75:33:1184:75:2673:-208.303,0,-74.3571	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:73:44,29:44:1580:29:1044:-72.2996,0,-120.516	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/1:52:21,31:21:752:31:1116:-85.0981,0,-52.3527	0/1:96:41,55:41:1468:55:1976:-149.216,0,-103.517	0/1:71:27,44:27:972:44:1576:-120.758,0,-66.4248	0/1:74:28,46:28:1000:46:1652:-126.692,0,-68.0392	0/1:101:49,52:49:1743:52:1838:-135.292,0,-126.745	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:81:40,41:40:1420:41:1468:-108.033,0,-103.714	0/0:114:114,0:114:4065:0:0:0,-34.3174,-366.037	0/1:18:14,4:14:500:4:140:-7.52604,0,-39.9176	0/1:53:21,32:21:752:32:1152:-88.0356,0,-52.0517	0/1:158:67,91:67:2404:91:3230:-241.82,0,-169.054	0/1:19:16,3:16:568:3:108:-4.3556,0,-45.7323	0/0:193:189,4:189:6757:4:144:0,-44.7852,-594.861	0/0:158:158,0:158:5664:0:0:0,-47.5627,-509.879	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/1:152:47,105:47:1688:105:3745:-291.495,0,-106.45	0/0:110:106,4:106:3804:4:144:0,-19.7997,-329.243	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.866	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:279:147,132:147:5260:132:4732:-342.049,0,-389.55	0/1:91:41,50:41:1468:50:1796:-134.529,0,-105.022	0/1:84:42,42:42:1508:42:1512:-111.088,0,-110.728	.:.:.:.:.:.:.:.	0/1:100:26,74:26:932:74:2645:-208.193,0,-54.0959	0/1:42:25,17:25:896:17:597:-41.4129,0,-68.3171	0/1:28:12,16:12:432:16:566:-42.842,0,-30.7924	0/1:105:47,58:47:1684:58:2073:-155.231,0,-120.239	0/1:77:26,51:26:928:51:1800:-139.099,0,-60.6589	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.777	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:105:50,55:50:1800:55:1965:-144.889,0,-130.674	0/1:106:41,65:41:1468:65:2321:-177.239,0,-100.507	0/1:72:20,52:20:712:52:1853:-145.374,0,-42.7325	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:16:3,13:3:108:13:453:-36.2831,0,-5.25869	0/1:97:49,48:49:1756:48:1701:-124.174,0,-129.124	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.703	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/0:94:93,1:93:3324:1:36:0,-24.6985,-295.78	0/1:81:59,22:59:2116:22:777:-45.7369,0,-166.325	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:161:67,94:67:2384:94:3372:-255.23,0,-166.352	0/1:67:16,51:16:572:51:1828:-144.632,0,-31.6444	0/1:16:10,6:10:360:6:216:-14.9657,0,-27.9278	0/0:56:56,0:56:1997:0:0:0,-16.8577,-180.002	0/1:99:72,27:72:2592:27:957:-56.6419,0,-203.726	0/1:18:9,9:9:324:9:322:-23.9057,0,-24.0873	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:77:25,52:25:896:52:1860:-144.5,0,-57.7694	0/0:119:119,0:119:4252:0:0:0,-35.8226,-382.86	0/1:101:31,70:31:1112:70:2516:-196.287,0,-69.9873	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.734	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:52:51,1:51:1828:1:36:0,-12.0553,-161.203	0/0:46:45,1:45:1616:1:36:0,-10.2491,-142.132	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/1:155:94,61:94:3368:61:2192:-150.886,0,-256.676	0/1:74:32,42:32:1140:42:1497:-112.746,0,-80.633	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.324	0/1:203:101,102:101:3620:102:3653:-267.863,0,-264.896	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/1:31:13,18:13:464:18:648:-49.32,0,-32.7656	0/1:79:41,38:41:1472:38:1360:-98.9192,0,-108.995	0/1:97:28,69:28:1000:69:2461:-192.543,0,-61.1155	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.892
chr07	2394475	.	G	A	48204.4	PASS	AB=0.40043;ABP=203.224;AC=125;AF=0.672043;AN=186;AO=2440;CIGAR=1X;DP=4702;DPB=4702;DPRA=0.332142;EPP=5301.4;EPPR=4908.37;GTI=9;LEN=1;MEANALT=1.02174;MQM=59.8939;MQMR=59.8358;NS=93;NUMALT=1;ODDS=0.47102;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87299;QR=80709;RO=2259;RPL=0;RPP=5301.4;RPPR=4908.37;RPR=2440;RUN=1;SAF=2440;SAP=5301.4;SAR=0;SRF=2259;SRP=4908.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:44:31,13:31:1112:13:468:-29.2143,0,-86.9949	0/1:41:23,18:23:816:18:644:-45.9484,0,-61.4179	0/1:54:30,24:30:1057:24:837:-59.39,0,-79.1833	1/1:20:0,20:0:0:20:697:-63.0507,-6.0206,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:50:23,27:23:820:27:972:-72.7441,0,-59.071	0/1:52:30,22:30:1068:22:788:-55.5912,0,-80.7785	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:35:17,18:17:608:18:648:-48.0626,0,-44.4983	1/1:31:0,31:0:0:31:1112:-100.346,-9.33193,0	0/1:33:13,20:13:468:20:720:-55.1948,0,-32.5257	1/1:32:1,31:1:36:31:1116:-97.1534,-6.03469,0	0/1:46:28,18:28:989:18:648:-44.8045,0,-75.47	0/1:17:9,8:9:324:8:288:-21.1465,0,-24.3883	0/1:31:12,19:12:432:19:669:-51.202,0,-29.8893	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:94:47,46:47:1688:46:1635:-119.036,0,-123.806	1/1:72:0,72:0:0:72:2573:-231.817,-21.6742,0	0/1:44:28,16:28:1000:16:572:-38.5681,0,-77.0701	0/1:16:8,8:8:288:8:273:-20.0837,0,-21.4509	0/1:24:10,14:10:356:14:504:-38.4734,0,-25.1565	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	1/1:125:0,125:0:0:125:4461:-401.17,-37.6288,0	1/1:58:0,58:0:0:58:2057:-185.388,-17.4597,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:106:55,51:55:1972:51:1832:-133.252,0,-145.846	1/1:29:2,27:2:72:27:953:-79.2016,-1.89315,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/0:149:148,0:148:5278:0:0:0,-44.5524,-474.762	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:135:132,3:132:4717:3:93:0,-31.9623,-415.982	0/1:78:33,45:33:1188:45:1616:-122.249,0,-83.7483	0/1:71:34,37:34:1205:37:1332:-98.8093,0,-87.3808	0/1:119:106,13:106:3792:13:468:-6.63708,0,-305.656	0/0:89:88,1:88:3123:1:36:0,-23.1934,-277.69	0/1:46:22,24:22:777:24:864:-64.2343,0,-56.403	0/1:62:52,10:52:1872:10:360:-14.0804,0,-150.004	0/1:50:28,22:28:1008:22:792:-56.5508,0,-75.9849	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/1:21:8,13:8:276:13:453:-34.7776,0,-18.8536	1/1:29:0,29:0:0:29:1044:-94.2744,-8.72987,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	0/1:51:29,22:29:1044:22:780:-55.1705,0,-78.9223	0/1:41:22,19:22:788:19:680:-49.1869,0,-58.9026	0/1:75:34,41:34:1209:41:1449:-108.103,0,-86.536	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/0:118:114,3:114:4073:3:108:0,-25.5052,-355.899	0/1:30:8,22:8:273:22:792:-62.5748,0,-15.8693	0/1:8:4,4:4:144:4:140:-10.5354,0,-10.9054	0/0:98:97,1:97:3480:1:36:0,-25.9037,-309.814	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	0/0:77:76,1:76:2732:1:36:0,-19.581,-242.523	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:59:0,59:0:0:59:2116:-190.68,-17.7608,0	0/1:28:14,14:14:500:14:500:-36.9073,0,-36.9064	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:72:29,43:29:1044:43:1525:-115.867,0,-72.6006	0/1:86:60,26:60:2122:26:932:-58.308,0,-165.357	0/0:75:69,6:69:2480:6:216:0,-2.78674,-203.585	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:52:23,29:23:828:29:1036:-77.9004,0,-59.1906	0/0:140:139,1:139:4908:1:36:0,-38.5459,-437.739	1/1:46:0,46:0:0:46:1629:-146.896,-13.8474,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2741	1/1:83:0,83:0:0:83:2968:-267.28,-24.9855,0	0/1:72:31,41:31:1112:41:1468:-110.675,0,-78.7172	0/1:40:22,18:22:788:18:614:-43.5358,0,-59.2036	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:26:0,26:0:0:26:913:-82.4822,-7.82678,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	0/1:43:22,21:22:773:21:756:-55.3779,0,-56.9452	0/1:21:9,12:9:320:12:432:-32.8996,0,-22.8207	1/1:27:0,27:0:0:27:972:-87.7964,-8.12781,0	0/1:44:16,28:16:576:28:1008:-77.791,0,-38.9297	1/1:18:0,18:0:0:18:636:-57.568,-5.41854,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:28:0,28:0:0:28:988:-89.2274,-8.42884,0	0/1:91:82,9:82:2944:9:320:-1.74863,0,-237.755	0/1:290:258,32:258:9245:32:1152:-16.6914,0,-743.351	0/1:36:28,8:28:1004:8:288:-15.4303,0,-79.8388	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0
chr07	2394502	.	GTCA	ATCA,ATCG	115194	PASS	AB=0.401424,0.593235;ABP=192.663,172.67;AC=124,62;AF=0.666667,0.333333;AN=186;AO=2392,2284;CIGAR=1X3M,1X2M1X;DP=4706;DPB=4705.5;DPRA=0.373057,1.5956;EPP=2056.48,2815.66;EPPR=7.35324;GTI=10;LEN=1,4;MEANALT=1.8,2.29091;MQM=59.9206,59.8087;MQMR=60;NS=93;NUMALT=2;ODDS=11472;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=85563,79706;QR=72;RO=2;RPL=1948,2002;RPP=2056.48,2815.66;RPPR=7.35324;RPR=444,282;RUN=1,1;SAF=2392,2284;SAP=5197.17,4962.65;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:5:0,1,4:0:0:1,4:36,129:-13.6695,-10.7246,-10.4236,-3.29724,0,-2.09312	1/2:44:0,13,31:0:0:13,31:464,1074:-125.448,-87.6175,-83.7042,-38.1841,0,-28.8522	1/2:41:0,18,23:0:0:18,23:644,806:-118.453,-65.9354,-60.5168,-52.8721,0,-45.9484	1/2:52:0,20,32:0:0:20,32:711,1101:-147.705,-89.7612,-83.7406,-58.295,0,-48.6621	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:49:0,26,23:0:0:26,23:924,785:-139.341,-64.0389,-56.2121,-75.6499,0,-68.7263	1/2:51:0,21,30:0:0:21,30:736,1048:-145.489,-85.5982,-79.2766,-60.2408,0,-51.2099	1/1:34:0,34,0:0:0:34,0:1216,0:-109.747,-10.235,0,-109.747,-10.235,-109.747	1/2:37:0,18,19:0:0:18,19:644,667:-107.121,-54.6312,-49.2126,-52.8444,0,-47.1248	1/1:31:0,30,0:0:0:30,0:1076,0:-96.8712,-9.0309,0,-96.8712,-9.0309,-96.8712	1/2:32:0,19,13:0:0:19,13:676,457:-92.6455,-37.5502,-31.8307,-55.4484,0,-51.535	1/1:32:0,31,1:0:0:31,1:1112,36:-100.032,-9.33193,0,-97.0941,-6.03469,-96.7931	1/2:45:0,17,28:0:0:17,28:612,966:-128.761,-78.8189,-73.7014,-50.2959,0,-41.8671	1/2:17:0,8,9:0:0:8,9:288,322:-50.112,-26.615,-24.2068,-23.8558,0,-21.1465	1/2:31:0,19,12:0:0:19,12:680,430:-90.8794,-35.4278,-29.7082,-55.8096,0,-52.1972	1/2:22:0,11,11:0:0:11,11:392,385:-63.6297,-31.674,-28.3626,-32.3087,0,-28.9974	1/2:23:0,11,11:0:0:11,11:396,387:-63.9167,-31.5971,-28.2858,-32.4127,0,-29.1013	1/1:17:0,17,0:0:0:17,0:606,0:-54.8714,-5.11751,0,-54.8714,-5.11751,-54.8714	1/2:92:0,43,48:0:0:43,48:1540,1703:-264.414,-138.821,-125.876,-125.708,0,-111.259	1/1:71:0,71,0:0:0:71,0:2543,0:-229.121,-21.3731,0,-229.121,-21.3731,-229.121	1/2:45:0,16,29:0:0:16,29:561,1004:-127.59,-81.9378,-77.1213,-46.0006,0,-37.2708	1/2:16:0,8,8:0:0:8,8:288,281:-46.726,-23.2223,-20.8141,-23.8592,0,-21.4509	1/2:23:0,13,10:0:0:13,10:468,346:-66.6567,-28.4623,-24.549,-38.5463,0,-35.536	1/2:23:0,11,12:0:0:11,12:396,419:-66.7479,-34.4312,-31.1198,-32.6714,0,-29.0591	1/1:120:0,119,0:0:0:119,0:4236,0:-381.128,-35.8226,0,-381.128,-35.8226,-381.128	1/1:57:0,57,0:0:0:57,0:2036,0:-183.512,-17.1587,0,-183.512,-17.1587,-183.512	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/2:108:0,52,55:0:0:52,55:1864,1913:-307.59,-155.557,-139.904,-152.055,0,-135.499	1/1:27:0,25,2:0:0:25,2:892,72:-80.1951,-7.52575,0,-74.32,-1.29109,-73.718	1/1:51:0,51,0:0:0:51,0:1836,0:-165.521,-15.3525,0,-165.521,-15.3525,-165.521	2/2:150:0,0,147:0:0:0,147:0,5132:-461.662,-461.662,-461.662,-44.2514,-44.2514,0	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	.:.:.:.:.:.:.:.	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	2/2:136:0,0,135:0:0:0,135:0,4696:-422.521,-422.521,-422.521,-40.6391,-40.6391,0	1/2:78:0,42,36:0:0:42,36:1508,1272:-226.956,-103.941,-91.2975,-123.371,0,-112.534	1/2:71:0,36,35:0:0:36,35:1296,1252:-208.197,-102.449,-91.6119,-106.107,0,-95.5708	1/2:122:0,14,108:0:0:14,108:504,3758:-347.032,-305.906,-301.692,-41.4837,0,-8.97243	2/2:90:0,1,89:0:0:1,89:36,3046:-273.947,-271.009,-270.708,-26.7917,-23.4944,0	1/2:46:0,22,24:0:0:22,24:788,843:-133.23,-68.9637,-62.341,-64.6212,0,-57.3965	1/2:65:0,10,54:0:0:10,54:360,1893:-183.495,-154.119,-151.109,-29.474,0,-13.2184	1/2:51:0,22,29:0:0:22,29:780,1020:-146.869,-83.3815,-76.7589,-63.8408,0,-55.1109	1/2:25:0,14,11:0:0:14,11:504,388:-73.0739,-31.946,-27.7315,-41.4837,0,-38.1723	1/2:20:0,12,8:0:0:12,8:432,277:-58.1137,-22.8569,-19.2445,-35.6084,0,-33.2002	1/1:26:0,26,0:0:0:26,0:932,0:-84.1985,-7.82678,0,-84.1985,-7.82678,-84.1985	1/1:28:0,28,0:0:0:28,0:1008,0:-91.0364,-8.42884,0,-91.0364,-8.42884,-91.0364	1/1:64:0,64,0:0:0:64,0:2282,0:-205.371,-19.2659,0,-205.371,-19.2659,-205.371	1/2:53:0,21,31:0:0:21,31:756,1087:-150.195,-88.5051,-82.1835,-61.7429,0,-52.411	1/2:41:0,19,22:0:0:19,22:680,761:-117.642,-62.1844,-56.4648,-55.8096,0,-49.1869	1/2:76:0,40,35:0:0:40,35:1436,1225:-216.799,-99.657,-87.6158,-117.137,0,-106.601	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:49:0,49,0:0:0:49,0:1756,0:-158.324,-14.7505,0,-158.324,-14.7505,-158.324	1/1:26:0,26,0:0:0:26,0:925,0:-83.5674,-7.82678,0,-83.5674,-7.82678,-83.5674	2/2:119:0,3,116:0:0:3,116:108,3984:-358.033,-349.22,-348.317,-34.9195,-25.7474,0	1/2:31:0,22,9:0:0:22,9:788,312:-89.9773,-25.705,-19.0824,-64.6221,0,-61.9129	1/2:8:0,3,4:0:0:3,4:104,139:-19.8126,-11.3547,-10.4516,-8.50313,0,-7.29901	2/2:100:0,0,97:0:0:0,97:0,3408:-306.595,-306.595,-306.595,-29.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chr07	2395569	.	C	T	32961.4	PASS	AB=0.509711;ABP=6.13129;AC=53;AF=0.281915;AN=188;AO=1950;CIGAR=1X;DP=7106;DPB=7106;DPRA=1.09904;EPP=4211.36;EPPR=11121.1;GTI=0;LEN=1;MEANALT=1;MQM=59.9246;MQMR=59.987;NS=94;NUMALT=1;ODDS=5.16792;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69632;QR=184153;RO=5156;RPL=1949;RPP=4228.7;RPPR=11190.4;RPR=1;RUN=1;SAF=1948;SAP=4220.03;SAR=2;SRF=5148;SRP=11129.7;SRR=8;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:9,16:9:305:16:572:-43.8575,0,-20.2515	0/1:87:61,26:61:2162:26:928:-57.6487,0,-168.653	0/1:163:65,98:65:2323:98:3496:-265.783,0,-160.262	0/1:133:78,55:78:2786:55:1956:-136.278,0,-210.943	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:82:32,50:32:1144:50:1796:-137.238,0,-78.5851	0/1:83:42,41:42:1504:41:1438:-104.722,0,-110.669	0/0:59:59,0:59:2099:0:0:0,-17.7608,-189.179	0/1:56:20,36:20:720:36:1296:-100.086,0,-48.2711	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.46	0/1:74:35,39:35:1260:39:1404:-104.383,0,-91.4293	0/0:49:49,0:49:1734:0:0:0,-14.7505,-156.341	0/1:34:17,17:17:608:17:608:-44.817,0,-44.817	0/1:44:29,15:29:1044:15:536:-35.3295,0,-81.0295	0/1:43:22,21:22:792:21:752:-55.062,0,-58.6614	0/1:40:16,24:16:572:24:847:-64.5075,0,-39.7722	0/1:20:12,8:12:432:8:279:-19.4269,0,-33.2006	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/1:198:84,114:84:2990:114:4061:-306.072,0,-209.728	0/0:140:140,0:140:5011:0:0:0,-42.1442,-451.136	0/1:87:32,55:32:1148:55:1953:-149.854,0,-77.4402	0/1:79:39,40:39:1404:40:1440:-106.116,0,-102.878	0/1:56:36,20:36:1296:20:712:-47.549,0,-100.086	0/1:86:35,51:35:1248:51:1815:-137.633,0,-86.7363	0/0:166:165,1:165:5900:1:36:0,-46.3727,-527.512	0/0:202:202,0:202:7227:0:0:0,-60.8081,-650.481	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.7422	0/1:198:102,96:102:3626:96:3433:-249.574,0,-266.942	0/0:170:167,3:167:5979:3:108:0,-41.0999,-528.14	0/0:123:123,0:123:4399:0:0:0,-37.0267,-396.069	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:43:43,0:43:1527:0:0:0,-12.9443,-137.722	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:26:11,15:11:388:15:536:-40.748,0,-27.4306	0/1:150:80,70:80:2852:70:2507:-180.727,0,-211.761	0/1:87:48,39:48:1694:39:1404:-100.47,0,-126.555	0/1:43:21,22:21:743:22:788:-58.3005,0,-54.249	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:118:74,44:74:2643:44:1572:-106.25,0,-202.595	0/1:36:15,21:15:536:21:748:-56.8082,0,-37.7377	0/1:121:53,68:53:1887:68:2436:-183.071,0,-133.683	0/1:47:31,16:31:1116:16:576:-38.0266,0,-86.6033	0/1:48:27,21:27:963:21:748:-53.1959,0,-72.5365	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.242	0/0:135:135,0:135:4754:0:0:0,-40.639,-428.015	0/1:70:31,39:31:1108:39:1400:-105.227,0,-78.9565	0/1:97:47,50:47:1683:50:1768:-130.194,0,-122.556	0/1:82:51,31:51:1828:31:1112:-75.7069,0,-140.116	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.56	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.496	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:102:50,52:50:1788:52:1857:-136.703,0,-130.498	0/1:23:10,13:10:356:13:464:-35.1738,0,-25.4576	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:86:86,0:86:3041:0:0:0,-25.8886,-273.918	0/0:95:95,0:95:3381:0:0:0,-28.5978,-304.504	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:158:157,1:157:5628:1:36:0,-43.9645,-503.042	0/0:135:135,0:135:4835:0:0:0,-40.639,-435.303	0/1:70:30,40:30:1071:40:1430:-107.917,0,-75.6295	0/0:69:68,1:68:2440:1:36:0,-17.1728,-216.257	0/1:82:44,38:44:1580:38:1364:-98.3763,0,-117.807	0/1:152:56,96:56:2001:96:3424:-262.615,0,-134.603	0/1:38:18,20:18:640:20:705:-52.3345,0,-46.4902	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:36:20,16:20:716:16:570:-40.7953,0,-53.9306	0/1:24:9,15:9:324:15:536:-41.3501,0,-22.2811	0/0:155:155,0:155:5515:0:0:0,-46.6596,-496.479	0/1:60:25,35:25:900:35:1252:-94.9233,0,-63.2592	0/0:123:122,1:122:4344:1:36:0,-33.4284,-387.536	0/1:173:81,92:81:2904:92:3291:-244.331,0,-209.517	0/1:53:28,25:28:976:25:900:-65.3664,0,-72.1951	0/0:76:76,0:76:2711:0:0:0,-22.8783,-244.234	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:92:92,0:92:3287:0:0:0,-27.6948,-296.049	0/0:100:100,0:100:3560:0:0:0,-30.103,-320.607	0/0:119:118,1:118:4232:1:36:0,-32.2243,-377.461	0/1:44:21,23:21:756:23:820:-60.8634,0,-55.1219	0/1:43:24,19:24:864:19:669:-47.5897,0,-65.1383	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:73:33,40:33:1160:40:1440:-107.923,0,-82.7287	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/0:51:51,0:51:1808:0:0:0,-15.3525,-162.999	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.116	0/1:58:36,22:36:1288:22:788:-53.7851,0,-98.7638	0/1:100:59,41:59:2124:41:1468:-102.313,0,-161.325	0/1:130:52,78:52:1868:78:2769:-210.317,0,-129.265	0/0:135:135,0:135:4822:0:0:0,-40.639,-434.135	0/0:77:77,0:77:2750:0:0:0,-23.1793,-247.741
chr07	2397804	.	C	T	99303.9	PASS	AB=0.478166;ABP=20.0786;AC=135;AF=0.725806;AN=186;AO=4863;CIGAR=1X;DP=7024;DPB=7024;DPRA=0;EPP=10562.9;EPPR=4680.37;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.9817;MQMR=59.9893;NS=93;NUMALT=1;ODDS=0.167453;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173789;QR=76637;RO=2158;RPL=4863;RPP=10562.9;RPPR=4680.37;RPR=0;RUN=1;SAF=4863;SAP=10562.9;SAR=0;SRF=2158;SRP=4689.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:62:30,32:30:1071:32:1152:-85.3263,0,-78.0378	0/1:56:25,31:25:892:31:1116:-83.894,0,-63.742	0/1:195:111,84:111:3967:84:3008:-212.25,0,-298.52	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:57:0,57:0:0:57:2030:-182.971,-17.1587,0	0/1:97:53,44:53:1889:44:1576:-112.932,0,-141.086	0/1:68:31,37:31:1108:37:1324:-98.9921,0,-79.561	1/1:56:0,56:0:0:56:1981:-178.564,-16.8577,0	0/1:60:40,20:40:1415:20:720:-47.067,0,-109.585	1/1:110:0,110:0:0:110:3932:-354.073,-33.1133,0	0/1:75:36,39:36:1275:39:1396:-103.362,0,-92.475	1/1:77:1,76:1:36:76:2720:-241.445,-19.581,0	0/1:132:58,74:58:2056:74:2644:-198.471,0,-145.573	0/1:59:32,27:32:1143:27:972:-70.0371,0,-85.4179	0/1:60:28,32:28:1004:32:1139:-84.7566,0,-72.6141	0/1:78:45,33:45:1607:33:1188:-83.7483,0,-121.439	0/1:50:24,26:24:860:26:936:-69.508,0,-62.6703	1/1:55:0,55:0:0:55:1980:-178.466,-16.5567,0	0/1:129:68,61:68:2414:61:2180:-157.633,0,-178.683	1/1:99:1,98:1:36:98:3516:-313.046,-26.2037,0	0/1:51:25,26:25:891:26:932:-68.8463,0,-65.1562	0/1:39:25,14:25:879:14:496:-33.2335,0,-67.6866	0/1:41:18,23:18:644:23:805:-60.4253,0,-45.9484	0/1:37:15,22:15:536:22:792:-60.4676,0,-37.4367	1/1:193:0,193:0:0:193:6924:-623.223,-58.0988,0	1/1:108:0,108:0:0:108:3863:-347.865,-32.5112,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:203:119,84:119:4219:84:2999:-209.032,0,-318.785	1/1:87:3,84:3:108:84:3013:-261.325,-16.1144,0	1/1:127:1,126:1:36:126:4520:-403.368,-34.6325,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:209:102,107:102:3603:107:3824:-281.44,0,-261.562	0/1:107:50,57:50:1774:57:2044:-152.022,0,-127.731	0/1:83:54,29:54:1928:29:1036:-68.5684,0,-148.725	.:.:.:.:.:.:.:.	0/1:87:49,38:49:1709:38:1364:-96.8711,0,-127.901	0/1:50:31,19:31:1108:19:684:-46.8388,0,-84.9795	0/1:85:34,51:34:1185:51:1804:-137.052,0,-81.3652	0/1:74:34,40:34:1203:40:1432:-106.901,0,-86.2955	0/1:46:26,20:26:912:20:708:-50.1982,0,-68.5457	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:44:0,44:0:0:44:1546:-139.428,-13.2453,0	1/1:93:0,93:0:0:93:3326:-299.557,-27.9958,0	0/1:47:27,20:27:960:20:716:-50.6193,0,-72.5679	0/1:101:50,51:50:1788:51:1819:-133.587,0,-130.799	0/1:91:48,43:48:1672:43:1535:-111.049,0,-123.37	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:82:2,80:2:72:80:2864:-251.159,-17.8477,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:75:38,36:38:1360:36:1264:-91.424,0,-100.065	0/1:31:17,14:17:584:14:500:-36.0042,0,-43.5489	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:154:0,154:0:0:154:5504:-495.486,-46.3586,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:129:0,129:0:0:129:4609:-413.524,-38.8329,0	1/1:99:0,99:0:0:99:3538:-318.629,-29.802,0	0/1:58:34,24:34:1198:24:864:-60.6228,0,-90.6643	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/1:150:83,67:83:2948:67:2391:-170.292,0,-220.398	0/1:64:36,28:36:1278:28:981:-69.3351,0,-96.0557	0/1:44:28,16:28:999:16:568:-38.2065,0,-76.9792	1/1:49:0,49:0:0:49:1756:-158.322,-14.7505,0	0/1:78:35,43:35:1260:43:1544:-115.773,0,-90.2251	0/1:20:16,4:16:567:4:144:-7.29302,0,-45.3401	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	1/1:118:0,118:0:0:118:4198:-378.001,-35.5215,0	0/1:151:80,71:80:2864:71:2548:-184.115,0,-212.542	0/1:76:45,31:45:1600:31:1093:-75.7994,0,-121.412	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:77:0,77:0:0:77:2759:-248.551,-23.1793,0	1/1:145:0,145:0:0:145:5159:-464.452,-43.6494,0	0/1:87:43,44:43:1540:44:1562:-114.68,0,-112.703	0/1:54:26,28:26:907:28:1004:-74.4202,0,-65.6887	1/1:96:0,96:0:0:96:3435:-309.363,-28.8989,0	0/1:371:166,205:166:5842:205:7287:-544.201,0,-414.219	1/1:55:0,55:0:0:55:1956:-176.313,-16.5567,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	0/1:58:30,28:30:1076:28:1004:-73.2143,0,-79.6931	0/1:194:102,92:102:3634:92:3295:-238.369,0,-268.865	0/1:73:49,24:49:1760:24:856:-55.3859,0,-136.709	1/1:102:0,102:0:0:102:3618:-325.825,-30.7051,0	1/1:81:0,79:0:0:79:2817:-253.408,-23.7814,0
chr07	2422537	.	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chr07	2448465	.	G	A	81092	PASS	AB=0.481139;ABP=12.0209;AC=135;AF=0.718085;AN=188;AO=3912;CIGAR=1X;DP=5433;DPB=5433;DPRA=19.4624;EPP=8497.81;EPPR=3299.31;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9604;MQMR=59.9934;NS=94;NUMALT=1;ODDS=1.25213;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139809;QR=54139;RO=1518;RPL=0;RPP=8497.81;RPPR=3299.31;RPR=3912;RUN=1;SAF=3912;SAP=8497.81;SAR=0;SRF=1518;SRP=3299.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:201:5:180:-13.2407,0,-15.1057	0/1:47:22,25:22:780:25:895:-66.7217,0,-56.3746	0/1:68:34,34:34:1205:34:1209:-88.6441,0,-88.2839	0/1:113:61,52:61:2161:52:1868:-134.352,0,-160.739	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:59:25,34:25:896:34:1220:-92.346,0,-63.1996	0/1:81:37,44:37:1290:44:1584:-118.468,0,-92.0134	1/1:84:0,84:0:0:84:3008:-270.95,-25.2865,0	0/1:44:22,22:22:792:22:777:-57.005,0,-58.358	1/1:34:0,34:0:0:34:1214:-109.566,-10.235,0	0/1:75:40,34:40:1425:34:1216:-87.1097,0,-105.91	1/1:43:0,43:0:0:43:1548:-139.507,-12.9443,0	0/1:51:32,19:32:1133:19:669:-45.1814,0,-86.9241	0/1:40:22,18:22:788:18:644:-46.2494,0,-59.2036	0/1:36:11,25:11:392:25:900:-70.4839,0,-24.783	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/1:19:8,11:8:288:11:381:-28.9011,0,-20.5478	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:95:43,52:43:1529:52:1864:-139.442,0,-109.303	1/1:89:0,89:0:0:89:3173:-285.793,-26.7917,0	0/1:88:60,28:60:2160:28:1007:-64.4557,0,-168.176	0/1:80:40,40:40:1436:40:1402:-102.391,0,-105.455	0/1:55:11,44:11:381:44:1584:-126.295,0,-18.064	0/1:56:31,25:31:1116:25:900:-64.4633,0,-83.894	1/1:189:1,188:1:36:188:6729:-602.08,-53.2964,0	1/1:173:0,173:0:0:173:6193:-557.465,-52.0782,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:160:75,85:75:2696:85:3032:-224.946,0,-194.719	1/1:84:1,83:1:32:83:2980:-265.232,-22.0872,0	1/1:56:0,56:0:0:56:1959:-176.58,-16.8577,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:19:9,10:9:316:10:356:-26.6617,0,-23.0593	0/1:124:59,65:59:2120:65:2336:-173.172,0,-153.74	0/1:82:38,44:38:1330:44:1563:-116.277,0,-95.3113	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5241	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:114:66,48:66:2338:48:1727:-121.398,0,-176.359	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:94:67,27:67:2404:27:964:-58.78,0,-188.32	0/1:32:20,12:20:712:12:428:-29.2258,0,-54.7737	0/1:32:17,15:17:608:15:540:-39.3036,0,-45.4191	1/1:82:0,82:0:0:82:2908:-261.954,-24.6845,0	1/1:63:0,63:0:0:63:2253:-203.031,-18.9649,0	1/1:126:0,126:0:0:126:4489:-403.99,-37.9298,0	0/1:49:33,16:33:1165:16:576:-37.4245,0,-90.4045	0/1:82:47,35:47:1688:35:1245:-87.6683,0,-127.522	0/1:89:33,56:33:1188:56:2012:-154.561,0,-80.4369	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:77:0,77:0:0:77:2743:-247.113,-23.1793,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:52:29,23:29:1040:23:824:-58.8298,0,-78.2608	0/1:31:9,22:9:309:22:784:-61.552,0,-18.8088	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:42:1,41:1:36:41:1472:-129.178,-9.04499,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	1/1:89:0,89:0:0:89:3188:-287.087,-26.7917,0	1/1:122:2,120:2:72:120:4308:-381.056,-29.8889,0	0/1:58:25,33:25:885:33:1154:-86.7025,0,-62.5068	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:70:32,38:32:1148:38:1353:-100.996,0,-82.5577	0/1:209:138,71:138:4944:71:2537:-165.664,0,-382.194	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:52:0,52:0:0:52:1845:-166.328,-15.6536,0	0/1:37:19,18:19:669:18:648:-47.5138,0,-49.3958	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:148:0,148:0:0:148:5276:-474.977,-44.5524,0	0/1:40:11,28:11:396:28:1004:-78.5759,0,-23.8828	1/1:71:0,71:0:0:71:2537:-228.579,-21.3731,0	0/1:103:50,53:50:1788:53:1888:-139.192,0,-130.193	0/1:46:24,21:24:864:21:756:-54.3543,0,-64.1764	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:57:0,57:0:0:57:2040:-183.682,-17.1587,0	1/1:119:0,119:0:0:119:4230:-380.88,-35.8226,0	0/1:60:31,29:31:1101:29:1040:-75.8526,0,-81.3366	0/1:43:19,24:19:684:24:860:-64.7771,0,-48.946	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:71:45,26:45:1605:26:932:-62.8257,0,-123.365	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:53:0,53:0:0:53:1880:-169.476,-15.9546,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:52:25,27:25:884:27:968:-71.7838,0,-64.2248	0/1:34:25,9:25:884:9:324:-19.2708,0,-69.6433	1/1:105:0,105:0:0:105:3752:-337.881,-31.6082,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0
chr07	2448853	.	G	A	5488.56	PASS	AB=0.451209;ABP=75.6907;AC=40;AF=0.212766;AN=188;AO=1592;CIGAR=1X;DP=7848;DPB=7848;DPRA=1.38881;EPP=3459.99;EPPR=13472.9;GTI=4;LEN=1;MEANALT=1.04444;MQM=21.8059;MQMR=43.9247;NS=94;NUMALT=1;ODDS=0.349438;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56973;QR=223014;RO=6251;RPL=1592;RPP=3459.99;RPPR=13472.9;RPR=0;RUN=1;SAF=0;SAP=3459.99;SAR=1592;SRF=0;SRP=13576.9;SRR=6251;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:360:0:0:0,-3.0103,-30.7609	0/0:83:83,0:83:2975:0:0:0,-24.9855,-259.204	0/0:99:99,0:99:3522:0:0:0,-29.802,-305.588	0/1:182:106,76:106:3786:76:2721:-94.1066,0,-280.729	0/0:46:46,0:46:1648:0:0:0,-13.8474,-144.247	0/0:32:32,0:32:1152:0:0:0,-9.63296,-100.281	0/1:142:74,68:74:2660:68:2444:-90.7095,0,-191.423	0/0:69:69,0:69:2441:0:0:0,-20.7711,-212.753	0/0:51:51,0:51:1807:0:0:0,-15.3525,-157.213	0/1:110:63,47:63:2255:47:1676:-59.3646,0,-166.652	0/0:30:30,0:30:1068:0:0:0,-9.0309,-94.6349	0/0:27:27,0:27:960:0:0:0,-8.12781,-84.4895	0/0:54:54,0:54:1936:0:0:0,-16.2556,-168.144	0/1:50:30,20:30:1063:20:716:-20.9413,0,-79.1069	0/1:30:11,19:11:392:19:680:-28.3297,0,-26.2139	0/1:26:13,13:13:459:13:468:-15.6473,0,-32.6956	0/0:17:17,0:17:612:0:0:0,-5.11751,-53.8979	0/0:14:14,0:14:504:0:0:0,-4.21442,-43.798	0/0:16:16,0:16:576:0:0:0,-4.81648,-49.8274	0/1:175:99,76:99:3540:76:2728:-96.8218,0,-258.449	0/0:202:201,1:201:7129:1:36:0,-58.8187,-623.412	0/1:78:42,36:42:1500:36:1280:-53.018,0,-110.149	0/1:116:56,60:56:2008:60:2130:-82.5901,0,-143	0/1:131:67,64:67:2382:64:2289:-75.132,0,-170.131	0/1:51:26,25:26:924:25:892:-29.5781,0,-66.226	0/0:297:297,0:297:10582:0:0:0,-89.4059,-940.316	0/0:187:187,0:187:6704:0:0:0,-56.2926,-588.559	0/0:18:18,0:18:648:0:0:0,-5.41854,-56.3002	0/1:196:106,90:106:3789:90:3221:-132.367,0,-278.836	0/0:176:175,1:175:6251:1:36:0,-50.9919,-545.939	0/0:160:159,1:159:5680:1:36:0,-45.9816,-499.548	0/1:12:8,4:8:288:4:144:-3.74817,0,-21.7619	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.3743	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.35581	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.2557	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.6417	0/1:129:76,53:76:2720:53:1904:-73.5519,0,-202.129	0/1:142:66,76:66:2342:76:2720:-93.4666,0,-161.809	0/0:22:22,0:22:792:0:0:0,-6.62266,-69.7037	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.53612	0/1:174:103,71:103:3683:71:2533:-75.6525,0,-270.023	0/1:21:15,6:15:540:6:216:-4.6197,0,-40.5501	0/1:106:57,49:57:2040:49:1756:-55.9911,0,-147.427	0/1:56:33,23:33:1184:23:820:-28.173,0,-88.4165	0/1:47:27,20:27:960:20:712:-25.3226,0,-71.1781	0/0:133:133,0:133:4727:0:0:0,-40.037,-419.006	0/0:127:127,0:127:4527:0:0:0,-38.2308,-395.235	0/0:116:115,0:115:4102:0:0:0,-34.6184,-362.27	0/1:104:58,46:58:2072:46:1652:-60.7938,0,-150.245	0/1:111:80,31:80:2864:31:1088:-27.1219,0,-219.6	0/1:196:118,78:118:4207:78:2796:-107.508,0,-314.99	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5724	0/0:216:216,0:216:7692:0:0:0,-65.0225,-665.326	0/0:51:51,0:51:1815:0:0:0,-15.3525,-162.407	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.96	0/1:91:62,29:62:2215:29:1044:-24.7268,0,-166.659	0/1:51:18,33:18:644:33:1180:-49.6615,0,-41.525	0/1:6:3,2:3:108:2:72:-2.70903,0,-7.86494	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.57343	0/0:117:117,0:117:4171:0:0:0,-35.2205,-365.882	0/0:77:77,0:77:2768:0:0:0,-23.1793,-244.427	0/1:5:1,4:1:36:4:144:-6.57251,0,-2.05347	0/0:189:189,0:189:6714:0:0:0,-56.8947,-595.365	0/0:213:212,1:212:7540:1:36:0,-61.9362,-661.287	0/1:73:43,30:43:1539:30:1072:-31.9074,0,-113.463	0/0:69:69,0:69:2459:0:0:0,-20.7711,-217.562	0/1:168:96,72:96:3411:72:2572:-90.0395,0,-251.963	0/1:123:54,69:54:1915:69:2467:-98.1055,0,-133.107	0/1:9:6,3:6:216:3:108:-2.86086,0,-16.7394	0/0:129:129,0:129:4601:0:0:0,-38.8329,-399.666	0/1:68:36,32:36:1288:32:1144:-47.7108,0,-94.6301	0/1:18:13,5:13:459:5:176:-4.6016,0,-35.394	0/0:144:142,0:142:5034:0:0:0,-42.7463,-435.954	0/0:25:25,0:25:892:0:0:0,-7.52575,-76.907	0/0:166:166,0:166:5916:0:0:0,-49.971,-513.02	0/1:187:101,86:101:3616:86:3088:-113.364,0,-264.034	0/0:19:19,0:19:652:0:0:0,-5.71957,-56.9451	0/0:96:96,0:96:3412:0:0:0,-28.8989,-297.275	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.5027	0/0:123:123,0:123:4404:0:0:0,-37.0267,-384.811	0/0:120:120,0:120:4264:0:0:0,-36.1236,-368.157	0/0:195:195,0:195:6974:0:0:0,-58.7008,-616.177	0/1:82:43,39:43:1536:39:1404:-52.1624,0,-111.917	0/1:48:32,16:32:1144:16:572:-17.1842,0,-87.2124	0/0:46:46,0:46:1648:0:0:0,-13.8474,-145.868	0/1:86:44,41:44:1576:41:1472:-54.857,0,-113.779	0/0:32:32,0:32:1144:0:0:0,-9.63296,-100.371	0/0:59:59,0:59:2098:0:0:0,-17.7608,-180.023	0/0:40:40,0:40:1436:0:0:0,-12.0412,-124.725	0/1:21:8,13:8:288:13:468:-17.1525,0,-18.9499	0/1:41:16,25:16:576:25:892:-32.5884,0,-38.3931	0/1:53:17,36:17:604:36:1296:-54.8228,0,-38.1677	0/0:133:131,2:131:4708:2:72:0,-35.889,-411.75	0/0:53:53,0:53:1888:0:0:0,-15.9546,-166.25
chr07	2494366	.	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chr07	2502396	.	G	A	174040	PASS	AB=0.524415;ABP=33.5479;AC=133;AF=0.707447;AN=188;AO=8325;CIGAR=1X;DP=11155;DPB=11155;DPRA=30.2908;EPP=18080.5;EPPR=6128.73;GTI=4;LEN=1;MEANALT=1.09783;MQM=59.9897;MQMR=59.9699;NS=94;NUMALT=1;ODDS=1.25545;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=297756;QR=100957;RO=2821;RPL=8325;RPP=18080.5;RPPR=6128.73;RPR=0;RUN=1;SAF=0;SAP=18080.5;SAR=8325;SRF=0;SRP=6128.73;SRR=2821;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:93:42,51:42:1500:51:1832:-137.165,0,-107.299	0/1:85:48,37:48:1709:37:1316:-93.1543,0,-128.506	0/1:208:72,136:72:2568:136:4880:-376.737,0,-168.756	0/1:269:142,127:142:5084:127:4525:-326.171,0,-376.727	1/1:105:1,104:1:36:104:3728:-332.12,-28.0099,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	0/1:65:33,32:33:1184:32:1136:-82.9806,0,-87.3014	0/1:251:106,145:106:3783:145:5193:-391.948,0,-265.111	1/1:139:1,138:1:36:138:4948:-441.871,-38.2449,0	0/1:124:57,67:57:2040:67:2400:-178.929,0,-146.544	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:102:45,57:45:1616:57:2048:-153.887,0,-115.025	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	0/1:79:45,34:45:1600:34:1224:-86.6857,0,-120.509	0/1:60:30,30:30:1072:30:1080:-79.4515,0,-78.7307	0/1:74:40,34:40:1422:34:1209:-86.8389,0,-106	0/1:56:23,33:23:824:33:1171:-88.839,0,-57.6256	0/1:33:16,17:16:576:17:612:-45.4794,0,-42.241	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:216:101,115:101:3620:115:4089:-303.171,0,-260.983	1/1:191:1,190:1:36:190:6793:-607.843,-53.8985,0	0/1:216:142,74:142:5100:74:2660:-174.623,0,-394.119	0/1:214:93,121:93:3332:121:4344:-326.713,0,-235.677	0/1:80:37,43:37:1316:43:1548:-115.531,0,-94.6594	0/1:105:48,57:48:1716:57:2040:-152.264,0,-123.117	1/1:336:0,336:0:0:336:12040:-1083.44,-101.146,0	1/1:287:1,286:1:36:286:10260:-919.725,-82.7973,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:354:151,203:151:5416:203:7276:-548.326,0,-381.004	1/1:191:0,191:0:0:191:6792:-611.351,-57.4967,0	1/1:183:0,183:0:0:183:6540:-588.684,-55.0885,0	0/1:15:11,4:11:396:4:140:-8.42913,0,-31.4673	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:208:104,104:104:3732:104:3708:-271.306,0,-273.466	0/1:131:49,82:49:1752:82:2928:-224.32,0,-118.529	0/1:48:24,24:24:855:24:860:-63.2724,0,-62.8207	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:168:80,87:80:2868:87:3112:-229.675,0,-207.725	0/1:19:11,8:11:384:8:288:-20.5478,0,-29.1751	0/1:313:127,186:127:4532:186:6645:-503.905,0,-313.826	0/1:53:30,23:30:1062:23:828:-58.8895,0,-79.9354	0/1:67:32,35:32:1148:35:1260:-93.5365,0,-83.4608	1/1:137:0,136:0:0:136:4830:-434.644,-40.9401,0	1/1:179:1,178:1:36:178:6346:-567.632,-50.2861,0	1/1:311:0,310:0:0:310:11045:-993.729,-93.3193,0	0/1:113:70,43:70:2520:43:1536:-104.517,0,-193.035	0/1:100:33,67:33:1184:67:2393:-185.522,0,-76.7653	0/1:125:58,66:58:2068:66:2356:-174.612,0,-148.704	1/1:18:1,17:1:36:17:612:-51.8152,-1.82027,0	1/1:171:0,171:0:0:171:6144:-553.056,-51.4761,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:162:91,71:91:3256:71:2514:-177.743,0,-244.365	0/1:109:44,65:44:1580:65:2326:-176.788,0,-109.679	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	1/1:61:0,61:0:0:61:2183:-196.736,-18.3628,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:205:0,205:0:0:205:7311:-658.041,-61.7112,0	1/1:294:2,291:2:72:291:10420:-931.018,-81.7142,0	0/1:39:17,22:17:612:22:792:-59.8655,0,-43.6733	1/1:127:0,127:0:0:127:4526:-407.508,-38.2308,0	0/1:213:77,135:77:2764:135:4842:-371.755,0,-184.815	0/1:194:116,78:116:4156:78:2773:-191.408,0,-315.823	0/1:62:27,35:27:968:35:1260:-95.0416,0,-68.7735	1/1:68:0,67:0:0:67:2404:-216.404,-20.169,0	0/1:34:19,15:19:684:15:540:-38.7015,0,-51.6553	0/1:35:16,19:16:576:19:680:-50.9931,0,-41.6389	1/1:103:0,103:0:0:103:3696:-332.841,-31.0061,0	0/1:109:57,52:57:2052:52:1866:-135.407,0,-152.139	1/1:295:0,294:0:0:294:10497:-944.437,-88.5028,0	0/1:220:112,107:112:4012:107:3825:-278.16,0,-294.983	0/1:209:65,144:65:2296:144:5160:-401.625,0,-143.757	1/1:89:0,89:0:0:89:3146:-283.365,-26.7917,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:142:0,142:0:0:142:5093:-458.512,-42.7463,0	1/1:236:0,236:0:0:236:8467:-762.016,-71.0431,0	1/1:301:0,301:0:0:301:10749:-967.314,-90.61,0	0/1:44:24,20:24:860:20:707:-50.7093,0,-64.4765	0/1:84:44,40:44:1576:40:1440:-104.611,0,-116.843	1/1:63:0,63:0:0:63:2245:-202.312,-18.9649,0	0/1:116:62,54:62:2228:54:1931:-139.146,0,-165.854	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:81:0,81:0:0:81:2889:-260.244,-24.3834,0	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	0/1:37:22,15:22:788:15:540:-37.7984,0,-60.1067	0/1:81:41,40:41:1463:40:1436:-105.154,0,-107.582	0/1:84:55,29:55:1959:29:1040:-68.6278,0,-151.298	1/1:233:0,233:0:0:233:8318:-748.627,-70.14,0	1/1:127:4,123:4:144:123:4401:-382.947,-24.9172,0
chr07	2502419	.	A	C	122168	PASS	AB=0.48508;ABP=11.8877;AC=134;AF=0.728261;AN=184;AO=5898;CIGAR=1X;DP=8278;DPB=8278;DPRA=0;EPP=12801.7;EPPR=5147.23;GTI=0;LEN=1;MEANALT=1.09783;MQM=59.988;MQMR=59.997;NS=92;NUMALT=1;ODDS=2.86349;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211061;QR=84506;RO=2369;RPL=0;RPP=12810.4;RPPR=5147.23;RPR=5898;RUN=1;SAF=5897;SAP=12801.7;SAR=1;SRF=2369;SRP=5147.23;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:30,34:30:1072:34:1201:-89.1277,0,-77.5265	0/1:44:26,18:26:917:18:648:-45.4066,0,-69.5993	0/1:145:93,52:93:3318:52:1868:-124.75,0,-255.186	0/1:217:114,103:114:4081:103:3678:-265.899,0,-302.151	1/1:50:1,48:1:36:48:1716:-151.127,-11.512,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:67:38,29:38:1340:29:1040:-73.7454,0,-100.731	0/1:158:73,85:73:2597:85:3052:-227.346,0,-186.415	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	0/1:98:51,47:51:1832:47:1673:-121.354,0,-135.659	1/1:86:0,86:0:0:86:3081:-277.516,-25.8886,0	0/1:99:50,49:50:1796:49:1756:-128.522,0,-132.12	1/1:107:0,107:0:0:107:3827:-344.626,-32.2102,0	0/1:89:51,38:51:1824:38:1368:-96.6292,0,-137.649	0/1:66:36,30:36:1292:30:1071:-76.8336,0,-96.7158	0/1:69:35,34:35:1241:34:1216:-88.9755,0,-91.2214	0/1:33:18,15:18:648:15:536:-38.6408,0,-48.7179	0/1:43:18,25:18:648:25:884:-66.9341,0,-45.7076	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:142:76,66:76:2713:66:2368:-170.632,0,-201.666	1/1:177:0,177:0:0:177:6328:-569.608,-53.2823,0	0/1:107:63,44:63:2222:44:1580:-110.281,0,-168.031	0/1:104:57,47:57:2033:47:1684:-120.54,0,-151.933	0/1:67:30,37:30:1061:37:1320:-98.9329,0,-75.6304	0/1:83:44,39:44:1561:39:1396:-100.953,0,-115.794	1/1:247:1,246:1:21:246:8804:-790.248,-72.2545,0	1/1:214:0,214:0:0:214:7672:-690.514,-64.4204,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:204:111,93:111:3924:93:3326:-238.147,0,-291.94	1/1:115:6,109:6:216:109:3893:-330.772,-14.8279,0	1/1:74:0,74:0:0:74:2636:-237.486,-22.2762,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:216:115,100:115:4113:100:3588:-257.989,0,-305.272	0/1:112:45,67:45:1612:67:2385:-181.191,0,-111.655	0/1:66:30,36:30:1072:36:1281:-95.7233,0,-76.9245	.:.:.:.:.:.:.:.	0/1:152:65,87:65:2336:87:3086:-232.211,0,-164.743	0/1:44:23,21:23:828:21:741:-53.7668,0,-61.5988	0/1:131:76,55:76:2732:55:1972:-138.32,0,-206.687	0/1:70:37,33:37:1328:33:1162:-83.8132,0,-98.7478	0/1:64:34,30:34:1216:30:1076:-77.8869,0,-90.4806	1/1:126:0,126:0:0:126:4493:-404.538,-37.9298,0	1/1:131:0,128:0:0:128:4596:-413.439,-38.5318,0	1/1:132:0,132:0:0:132:4728:-425.679,-39.736,0	0/1:88:40,48:40:1428:48:1724:-128.955,0,-102.327	0/1:125:64,61:64:2265:61:2188:-159.557,0,-166.483	0/1:83:35,47:35:1241:47:1688:-127.163,0,-86.9484	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:109:0,109:0:0:109:3893:-350.563,-32.8123,0	1/1:48:0,48:0:0:48:1713:-154.454,-14.4494,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:88:43,44:43:1514:44:1580:-115.942,0,-110	0/1:43:22,21:22:788:21:748:-54.7004,0,-58.3005	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:74:0,74:0:0:74:2645:-238.296,-22.2762,0	1/1:92:1,91:1:32:91:3255:-289.971,-24.4954,0	.:.:.:.:.:.:.:.	1/1:155:0,155:0:0:155:5536:-498.364,-46.6597,0	1/1:173:1,172:1:36:172:6156:-550.54,-48.4799,0	0/1:59:24,35:24:864:35:1256:-95.5845,0,-60.3218	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	0/1:147:76,71:76:2713:71:2526:-183.341,0,-200.161	0/1:170:102,67:102:3615:67:2408:-165.89,0,-274.468	0/1:60:32,28:32:1152:28:1004:-72.6141,0,-85.9283	1/1:71:0,71:0:0:71:2533:-228.22,-21.3731,0	0/1:70:31,39:31:1089:39:1400:-104.957,0,-77.2452	0/1:33:19,14:19:665:14:500:-35.4022,0,-50.2388	1/1:109:0,109:0:0:109:3892:-350.475,-32.8123,0	0/1:91:39,52:39:1389:52:1864:-140.646,0,-97.9132	1/1:164:0,164:0:0:164:5890:-530.203,-49.3689,0	0/1:125:58,67:58:2061:67:2385:-177.277,0,-148.131	0/1:83:51,32:51:1828:32:1148:-78.6439,0,-139.815	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:66:1,65:1:36:65:2324:-205.822,-16.2697,0	1/1:82:0,82:0:0:82:2933:-264.204,-24.6845,0	1/1:226:0,225:0:0:225:8037:-722.991,-67.7318,0	0/1:71:27,44:27:972:44:1576:-120.758,0,-66.4248	0/1:74:28,44:28:1000:44:1561:-118.746,0,-68.2816	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:138:62,76:62:2224:76:2732:-204.58,0,-158.882	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	0/1:61:35,26:35:1260:26:932:-65.836,0,-95.3427	0/1:133:74,59:74:2660:59:2116:-150.672,0,-199.608	0/1:80:50,30:50:1792:30:1076:-73.0705,0,-137.48	1/1:140:0,140:0:0:140:5017:-451.676,-42.1442,0	1/1:86:0,86:0:0:86:3075:-276.978,-25.8886,0
chr07	2505236	.	A	T	49973.6	PASS	AB=0.527197;ABP=38.6816;AC=55;AF=0.292553;AN=188;AO=2950;CIGAR=1X;DP=10198;DPB=10198;DPRA=1.26328;EPP=6408.85;EPPR=15691.9;GTI=0;LEN=1;MEANALT=1.16129;MQM=59.9949;MQMR=59.9964;NS=94;NUMALT=1;ODDS=0.244852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104921;QR=253028;RO=7233;RPL=2948;RPP=6391.49;RPPR=15683.2;RPR=2;RUN=1;SAF=2948;SAP=6391.49;SAR=2;SRF=7228;SRP=15665.9;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:21,9:21:744:9:324:-20.475,0,-58.2534	0/1:136:58,78:58:2029:78:2736:-205.542,0,-141.941	0/1:107:49,57:49:1702:57:2048:-152.323,0,-121.195	0/1:222:114,108:114:3985:108:3840:-278.968,0,-292.019	0/0:72:71,1:71:2458:1:36:0,-18.0759,-217.876	0/0:49:49,0:49:1721:0:0:0,-14.7505,-155.173	0/1:125:55,70:55:1876:70:2483:-186.096,0,-131.485	0/1:211:92,119:92:3238:119:4179:-312.772,0,-228.127	0/0:106:106,0:106:3733:0:0:0,-31.9092,-336.175	0/1:128:48,80:48:1696:80:2854:-218.565,0,-114.394	0/0:60:60,0:60:2113:0:0:0,-18.0618,-190.438	0/1:103:44,58:44:1545:58:2075:-155.955,0,-108.275	0/0:76:76,0:76:2653:0:0:0,-22.8783,-239.015	0/1:66:29,37:29:1031:37:1294:-96.889,0,-73.2346	0/1:58:32,26:32:1108:26:928:-66.3785,0,-82.5642	0/1:56:28,28:28:983:28:996:-73.0972,0,-71.9249	0/1:87:43,44:43:1503:44:1559:-114.411,0,-109.373	0/1:84:43,41:43:1518:41:1413:-102.172,0,-111.625	0/0:32:32,0:32:1110:0:0:0,-9.63296,-100.205	0/1:147:66,81:66:2319:81:2887:-215.815,0,-164.72	0/0:134:134,0:134:4724:0:0:0,-40.338,-425.325	0/1:169:67,102:67:2351:102:3601:-273.424,0,-160.976	0/1:94:47,47:47:1660:47:1680:-123.19,0,-121.391	0/1:113:49,64:49:1694:64:2295:-172.794,0,-118.728	0/1:87:29,58:29:993:58:2080:-161.281,0,-63.4873	0/0:345:343,2:343:11952:2:72:0,-97.0186,-1068.73	0/0:205:205,0:205:7242:0:0:0,-61.7111,-651.846	0/0:81:81,0:81:2768:0:0:0,-24.3834,-249.362	0/1:215:94,121:94:3323:121:4314:-323.715,0,-234.569	0/0:163:161,2:161:5632:2:68:0,-42.6102,-500.557	0/0:97:97,0:97:3429:0:0:0,-29.1999,-308.825	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:247:141,105:141:4932:105:3731:-261.58,0,-369.625	0/1:228:111,116:111:3916:116:4129:-303.101,0,-283.945	0/1:81:51,30:51:1766:30:1074:-72.5893,0,-134.835	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:187:94,92:94:3232:92:3270:-238.209,0,-234.793	0/1:27:13,14:13:456:14:500:-37.2084,0,-33.2454	0/1:145:64,81:64:2245:81:2894:-217.046,0,-158.664	0/1:95:42,53:42:1491:53:1874:-140.339,0,-105.886	0/1:82:44,38:44:1526:38:1334:-95.6739,0,-112.946	0/0:174:174,0:174:6079:0:0:0,-52.3792,-547.223	0/0:180:180,0:180:6298:0:0:0,-54.1854,-566.925	0/0:278:276,2:276:9599:2:72:0,-76.8496,-857.056	0/1:131:70,60:70:2442:60:2122:-151.842,0,-180.632	0/1:161:75,86:75:2651:86:3064:-227.521,0,-190.372	0/1:116:58,54:58:2047:54:1918:-138.821,0,-150.427	0/0:17:17,0:17:579:0:0:0,-5.11751,-52.431	0/0:167:164,3:164:5765:3:108:0,-40.1968,-508.902	0/0:31:31,0:31:1096:0:0:0,-9.33193,-98.9499	0/1:22:10,12:10:343:12:432:-32.5985,0,-24.5779	0/1:146:69,77:69:2439:77:2739:-202.796,0,-175.816	0/1:70:36,34:36:1266:34:1204:-87.5937,0,-93.169	0/1:11:4,7:4:136:7:252:-19.7176,0,-9.26421	0/0:17:17,0:17:587:0:0:0,-5.11751,-53.1539	0/0:46:46,0:46:1622:0:0:0,-13.8474,-146.267	0/0:121:120,1:120:4219:1:36:0,-32.8264,-376.297	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/0:296:296,0:296:10307:0:0:0,-89.1049,-927.586	0/0:208:203,5:203:7083:5:176:0,-46.4292,-621.359	0/1:80:40,40:40:1385:40:1420:-104.015,0,-100.862	0/0:89:89,0:89:3025:0:0:0,-26.7917,-272.485	0/1:162:73,89:73:2562:89:3166:-236.397,0,-182.065	0/1:86:36,50:36:1250:50:1783:-134.863,0,-86.9119	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/0:89:89,0:89:3089:0:0:0,-26.7917,-278.243	0/1:99:51,48:51:1780:48:1716:-124.924,0,-130.678	0/1:10:4,6:4:135:6:216:-16.7802,0,-9.47221	0/0:119:119,0:119:4137:0:0:0,-35.8226,-372.522	0/1:71:24,46:24:848:46:1648:-127.177,0,-55.208	0/0:102:101,1:101:3517:1:36:0,-27.1068,-313.146	0/1:245:94,151:94:3331:151:5370:-409.68,0,-226.258	0/1:202:104,98:104:3641:98:3516:-255.841,0,-267.092	0/0:148:148,0:148:5186:0:0:0,-44.5524,-466.886	0/0:17:17,0:17:591:0:0:0,-5.11751,-53.5153	0/0:229:224,3:224:7742:3:108:0,-58.6185,-686.768	0/0:108:108,0:108:3750:0:0:0,-32.5112,-337.702	0/0:231:231,0:231:8144:0:0:0,-69.5379,-732.762	0/1:143:77,65:77:2734:65:2320:-166.043,0,-203.285	0/1:57:28,29:28:978:29:1044:-77.1161,0,-71.1725	0/0:110:110,0:110:3869:0:0:0,-33.1133,-348.407	0/1:191:95,96:95:3361:96:3432:-251.597,0,-245.211	0/0:58:58,0:58:2041:0:0:0,-17.4597,-183.96	0/0:94:94,0:94:3300:0:0:0,-28.2968,-297.222	0/0:66:65,0:65:2283:0:0:0,-19.5669,-205.37	0/1:26:12,14:12:424:14:500:-37.5094,0,-30.6696	0/1:79:38,41:38:1338:41:1472:-108.995,0,-96.9371	0/1:79:27,52:27:942:52:1835:-141.647,0,-61.311	0/0:97:97,0:97:3398:0:0:0,-29.1999,-306.037	0/0:104:104,0:104:3616:0:0:0,-31.3071,-325.653
chr07	2506003	.	T	C	146307	PASS	AB=0.519509;ABP=18.3454;AC=132;AF=0.709677;AN=186;AO=6993;CIGAR=1X;DP=9238;DPB=9238;DPRA=100.402;EPP=15188.1;EPPR=4856.25;GTI=3;LEN=1;MEANALT=1.09783;MQM=53.759;MQMR=59.7248;NS=93;NUMALT=1;ODDS=1.20314;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250208;QR=80095;RO=2235;RPL=0;RPP=15188.1;RPPR=4856.25;RPR=6993;RUN=1;SAF=6993;SAP=15188.1;SAR=0;SRF=2235;SRP=4856.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:104:44,60:44:1580:60:2133:-159.662,0,-111.173	0/1:63:36,27:36:1292:27:968:-67.1744,0,-97.6173	0/1:134:61,73:61:2192:73:2604:-193.196,0,-157.207	0/1:233:104,129:104:3736:129:4613:-344.594,0,-266.246	1/1:119:1,118:1:36:118:4217:-373.99,-32.2243,0	1/1:14:0,14:0:0:14:504:-45.4743,-4.21442,0	0/1:61:31,30:31:1108:30:1076:-78.6172,0,-81.6682	0/1:183:92,91:92:3292:91:3272:-237.649,0,-241.387	1/1:169:0,167:0:0:167:5996:-536.048,-50.272,0	0/1:63:26,37:26:932:37:1323:-99.0588,0,-65.234	1/1:23:0,23:0:0:23:824:-74.4147,-6.92369,0	0/1:44:24,20:24:860:20:720:-51.4142,0,-64.2754	1/1:26:0,25:0:0:25:900:-80.4012,-7.52575,0	0/1:31:12,19:12:428:19:684:-52.4706,0,-29.525	0/1:42:16,26:16:576:26:932:-71.4422,0,-39.5294	0/1:11:6,5:6:216:5:180:-13.2173,0,-16.4783	0/1:18:8,10:8:288:10:356:-26.8618,0,-20.8489	0/1:12:3,9:3:108:9:316:-25.0795,0,-6.46281	1/1:10:0,10:0:0:10:356:-32.2803,-3.0103,0	0/1:228:125,103:125:4469:103:3692:-262.108,0,-333.734	1/1:217:0,217:0:0:217:7765:-696.162,-65.3235,0	0/1:196:132,64:132:4724:64:2284:-146.609,0,-366.316	0/1:164:71,93:71:2548:93:3320:-248.636,0,-180.196	0/1:69:24,45:24:864:45:1616:-124.252,0,-57.3069	0/1:131:76,55:76:2736:55:1972:-137.991,0,-207.021	1/1:394:0,394:0:0:394:14067:-1261.54,-118.606,0	1/1:208:0,208:0:0:208:7441:-668.261,-62.6142,0	1/1:11:0,11:0:0:11:396:-35.8824,-3.31133,0	0/1:285:146,139:146:5212:139:4963:-360.771,0,-383.101	1/1:140:2,138:2:72:138:4952:-437.304,-35.3075,0	1/1:150:0,150:0:0:150:5364:-481.382,-45.1545,0	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:12:2,10:2:72:10:360:-29.0855,0,-3.22436	.:.:.:.:.:.:.:.	1/1:15:0,15:0:0:15:540:-48.5958,-4.51545,0	0/1:11:5,6:5:180:6:212:-16.0551,0,-13.2407	0/1:102:52,50:52:1860:50:1792:-130.683,0,-136.974	0/1:212:112,99:112:4016:99:3540:-252.048,0,-297.872	0/1:19:6,13:6:216:13:453:-35.2439,0,-14.0626	0/1:6:5,1:5:180:1:36:-1.78699,0,-14.7459	0/1:142:63,79:63:2264:79:2809:-209.896,0,-161.265	0/1:8:5,3:5:180:3:108:-7.52321,0,-14.1438	0/1:247:68,179:68:2436:179:6405:-499.838,0,-145.141	0/1:24:7,17:7:252:17:599:-46.9696,0,-15.8042	0/1:23:8,15:8:284:15:540:-41.865,0,-18.9797	1/1:195:0,195:0:0:195:6981:-626.744,-58.7009,0	1/1:153:1,152:1:36:152:5432:-483.131,-42.4593,0	1/1:239:0,239:0:0:239:8548:-767.071,-71.9462,0	0/1:119:49,70:49:1756:70:2504:-189.458,0,-122.492	0/1:97:56,41:56:2004:41:1468:-102.022,0,-151.401	0/1:135:57,78:57:2044:78:2804:-211.722,0,-143.593	1/1:9:0,9:0:0:9:324:-29.3976,-2.70927,0	1/1:246:0,246:0:0:246:8748:-783.168,-74.0534,0	1/1:61:0,60:0:0:60:2152:-193.086,-18.0618,0	0/1:11:5,6:5:180:6:216:-16.4143,0,-13.2407	0/1:190:98,92:98:3512:92:3285:-237.35,0,-259.02	0/1:50:28,21:28:1008:21:752:-52.9176,0,-76.0388	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:9:0,9:0:0:9:324:-28.9344,-2.70927,0	1/1:79:0,79:0:0:79:2813:-252.729,-23.7814,0	1/1:66:0,66:0:0:66:2352:-211.586,-19.868,0	0/1:5:3,2:3:108:2:68:-4.94911,0,-8.57002	1/1:204:0,203:0:0:203:7276:-651.302,-61.1091,0	1/1:171:2,168:2:72:168:6024:-534.055,-44.698,0	0/1:58:34,24:34:1209:24:860:-60.0272,0,-91.6498	1/1:112:0,112:0:0:112:4012:-359.95,-33.7154,0	0/1:281:136,145:136:4892:145:5177:-380.288,0,-355.7	0/1:174:98,76:98:3512:76:2716:-191.426,0,-263.039	0/1:11:6,5:6:216:5:180:-13.0508,0,-16.4709	1/1:83:0,83:0:0:83:2983:-266.657,-24.9855,0	0/1:36:16,20:16:576:20:720:-54.2721,0,-41.337	0/1:19:9,10:9:324:10:360:-26.9165,0,-23.7839	1/1:145:0,145:0:0:145:5202:-465.287,-43.6494,0	0/1:84:39,44:39:1404:44:1572:-114.699,0,-101.304	1/1:246:0,246:0:0:246:8772:-785.885,-74.0534,0	0/1:165:68,97:68:2432:97:3484:-263.447,0,-169.456	0/1:151:64,87:64:2273:87:3116:-233.833,0,-159.328	1/1:92:0,92:0:0:92:3288:-294.893,-27.6948,0	1/1:9:0,9:0:0:9:320:-29.0451,-2.70927,0	1/1:134:0,134:0:0:134:4812:-432.242,-40.338,0	1/1:167:2,165:2:68:165:5889:-520.185,-43.8188,0	1/1:361:0,360:0:0:360:12909:-1158.89,-108.371,0	0/1:30:13,17:13:468:17:612:-45.7013,0,-33.4287	0/1:30:14,16:14:504:16:576:-43.0466,0,-36.6672	1/1:19:0,19:0:0:19:680:-61.3963,-5.71957,0	0/1:37:19,18:19:680:18:640:-46.1646,0,-50.3626	1/1:14:0,14:0:0:14:504:-45.5483,-4.21442,0	1/1:39:0,39:0:0:39:1404:-126.23,-11.7402,0	1/1:28:0,28:0:0:28:1004:-90.3012,-8.42884,0	0/1:12:5,7:5:180:7:248:-19.0195,0,-12.9397	0/1:36:17,19:17:608:19:684:-50.8399,0,-44.214	0/1:30:22,8:22:784:8:288:-17.1268,0,-61.853	1/1:186:0,186:0:0:186:6665:-598.216,-55.9916,0	1/1:34:0,34:0:0:34:1224:-110.273,-10.235,0
chr07	2506169	.	TTA	TTG,CTG	152799	PASS	AB=0.477895,0.52;ABP=19.1386,16.2129;AC=134,54;AF=0.712766,0.287234;AN=188;AO=5177,1986;CIGAR=2M1X,1X1M1X;DP=7177;DPB=7177;DPRA=77.1613,0.983647;EPP=11201.3,4280.88;EPPR=5.18177;GTI=2;LEN=1,3;MEANALT=1.76344,2.15254;MQM=59.8517,58.7749;MQMR=60;NS=94;NUMALT=2;ODDS=1.10744;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=185014,69697;QR=21;RO=1;RPL=5,4;RPP=11201.3,4280.88;RPPR=5.18177;RPR=5172,1982;RUN=1,1;SAF=0,0;SAP=11244.7,4315.55;SAR=5177,1986;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:64:0,29,34:0:0:29,34:1040,1186:-181.309,-96.4775,-87.7476,-84.9309,0,-74.6959	1/2:129:0,57,72:0:0:57,72:2039,2551:-374.076,-207.814,-190.655,-166.619,0,-144.944	1/2:83:0,44,38:0:0:44,38:1563,1331:-235.625,-108.33,-95.0851,-127.356,0,-115.917	1/2:124:0,62,62:0:0:62,62:2221,2159:-356.732,-175.842,-157.178,-181.243,0,-162.579	1/1:86:0,86,0:0:0:86,0:3096,0:-278.866,-25.8886,0,-278.866,-25.8886,-278.866	1/1:51:0,51,0:0:0:51,0:1832,0:-165.16,-15.3525,0,-165.16,-15.3525,-165.16	1/2:69:0,30,38:0:0:30,38:1080,1362:-199.143,-111.02,-101.989,-88.1256,0,-76.6864	1/2:156:0,85,71:0:0:85,71:3036,2458:-447.404,-199.877,-174.289,-247.878,0,-226.504	1/1:87:0,87,0:0:0:87,0:3081,0:-277.509,-26.1896,0,-277.509,-26.1896,-277.509	1/2:140:0,69,70:0:0:69,70:2476,2461:-402.172,-200.204,-179.433,-202.11,0,-181.038	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:28:0,14,14:0:0:14,14:500,498:-81.5961,-40.9168,-36.7024,-41.0351,0,-36.8206	1/1:34:0,34,0:0:0:34,0:1224,0:-110.459,-10.235,0,-110.459,-10.235,-110.459	1/2:36:0,21,15:0:0:21,15:739,529:-103.575,-43.4257,-37.1041,-60.5015,0,-55.9861	1/2:44:0,27,17:0:0:27,17:952,600:-126.691,-49.1782,-41.0504,-77.8653,0,-72.7478	1/2:25:0,14,11:0:0:14,11:504,394:-73.615,-32.4902,-28.2758,-41.4837,0,-38.1723	1/2:37:0,21,16:0:0:21,16:723,542:-102.826,-44.1046,-37.783,-59.0617,0,-54.2452	1/2:36:0,16,20:0:0:16,20:567,706:-103.909,-57.7176,-52.9011,-46.5442,0,-40.5236	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:159:0,69,90:0:0:69,90:2467,3105:-453.677,-252.525,-231.754,-201.504,0,-174.412	1/1:124:0,123,1:0:0:123,1:4421,36:-397.425,-37.0267,0,-394.487,-33.7294,-394.186	1/2:123:0,36,87:0:0:36,87:1288,3085:-356.709,-251.679,-240.842,-105.387,0,-79.1969	1/2:84:0,44,39:0:0:44,39:1572,1363:-239.12,-110.944,-97.6991,-128.324,0,-116.584	1/2:104:0,52,52:0:0:52,52:1868,1841:-302.637,-150.247,-134.594,-152.746,0,-137.092	1/2:74:0,22,52:0:0:22,52:777,1845:-213.948,-150.673,-144.051,-63.6277,0,-47.9741	1/1:418:0,418,0:0:0:418,0:14942,0:-1344.4,-125.831,0,-1344.4,-125.831,-1344.4	1/1:152:0,152,0:0:0:152,0:5460,0:-491.422,-45.7566,0,-491.422,-45.7566,-491.422	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/2:215:0,95,120:0:0:95,120:3407,4182:-618.267,-340.376,-311.778,-278.245,0,-242.122	1/1:112:1,107,3:1:21:107,3:3819,108:-341.686,-30.6513,0,-333.175,-23.353,-333.86	1/1:114:0,112,1:0:0:112,1:4012,36:-360.954,-33.7154,0,-358.017,-30.703,-357.716	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:3:0,3,0:0:0:3,0:108,0:-10.0031,-0.90309,0,-10.0031,-0.90309,-10.0031	2/2:1:0,0,1:0:0:0,1:0,36:-3.59727,-3.59727,-3.59727,-0.30103,-0.30103,0	1/2:110:0,52,58:0:0:52,58:1868,2038:-318.587,-166.196,-150.543,-152.746,0,-135.286	1/2:215:0,102,111:0:0:102,111:3624,3879:-610.642,-315.34,-284.635,-295.336,0,-261.921	1/2:23:0,17,6:0:0:17,6:612,216:-67.9141,-17.9788,-12.8613,-50.295,0,-48.4888	1/2:3:0,1,2:0:0:1,2:36,64:-8.42677,-5.47604,-5.17501,-3.29724,0,-2.69518	1/2:93:0,30,63:0:0:30,63:1070,2223:-268.143,-181.092,-172.062,-87.4056,0,-68.4407	1/2:9:0,1,8:0:0:1,8:36,288:-25.6354,-22.6962,-22.3952,-3.29724,0,-0.889005	1/2:137:0,75,62:0:0:75,62:2675,2182:-395.51,-177.445,-154.868,-218.418,0,-199.754	1/2:38:0,17,21:0:0:17,21:608,753:-111.295,-61.718,-56.6005,-49.9345,0,-43.6129	1/2:41:0,24,17:0:0:24,17:856,591:-118.16,-48.3745,-41.1498,-70.1364,0,-65.0189	1/1:64:0,63,0:0:0:63,0:2229,0:-200.652,-18.9649,0,-200.652,-18.9649,-200.652	1/1:138:0,138,0:0:0:138,0:4934,0:-444.203,-41.5421,0,-444.203,-41.5421,-444.203	1/1:128:0,128,0:0:0:128,0:4555,0:-410.113,-38.5318,0,-410.113,-38.5318,-410.113	1/2:113:0,47,66:0:0:47,66:1692,2310:-326.028,-187.965,-173.816,-138.418,0,-118.55	1/2:90:0,60,30:0:0:60,30:2152,1062:-262.361,-86.8311,-68.7693,-175.885,0,-166.855	1/2:100:0,52,48:0:0:52,48:1868,1671:-288.568,-136.176,-120.522,-152.746,0,-138.296	1/1:20:0,20,0:0:0:20,0:716,0:-64.7644,-6.0206,0,-64.7644,-6.0206,-64.7644	1/1:100:0,99,0:0:0:99,0:3503,0:-315.104,-29.802,0,-315.104,-29.802,-315.104	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/2:13:0,6,7:0:0:6,7:216,233:-36.8168,-19.1797,-17.3735,-17.9843,0,-15.8771	1/2:95:0,45,49:0:0:45,49:1612,1684:-268.11,-136.656,-123.11,-131.45,0,-116.7	1/2:23:0,11,12:0:0:11,12:396,432:-67.8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chr07	2506707	.	C	A	25306	PASS	AB=0.48383;ABP=10.1733;AC=53;AF=0.281915;AN=188;AO=1531;CIGAR=1X;DP=5957;DPB=5957;DPRA=0.977559;EPP=3327.53;EPPR=9596.58;GTI=2;LEN=1;MEANALT=1.07407;MQM=59.9099;MQMR=58.3984;NS=94;NUMALT=1;ODDS=2.50655;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54804;QR=157424;RO=4418;RPL=0;RPP=3327.53;RPPR=9596.58;RPR=1531;RUN=1;SAF=1531;SAP=3327.53;SAR=0;SRF=4418;SRP=9596.58;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:28,27:28:1000:27:972:-71.2413,0,-73.7229	0/1:48:31,17:31:1104:17:612:-40.964,0,-85.1777	0/1:210:103,107:103:3659:107:3841:-282.649,0,-265.645	0/1:106:69,36:69:2456:36:1288:-84.2557,0,-188.766	0/0:37:37,0:37:1308:0:0:0,-11.1381,-118.012	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.7776	0/1:39:23,16:23:820:16:576:-40.4325,0,-62.3298	0/1:69:35,34:35:1252:34:1216:-88.9755,0,-92.1196	0/0:71:71,0:71:2532:0:0:0,-21.3731,-227.943	0/1:39:21,18:21:756:18:644:-46.5504,0,-56.5298	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.087	0/1:65:37,28:37:1310:28:996:-70.3874,0,-98.5893	0/0:53:53,0:53:1861:0:0:0,-15.9546,-167.758	0/1:47:30,17:30:1076:17:608:-40.9036,0,-82.9549	0/1:34:18,15:18:648:15:540:-38.6427,0,-48.2711	0/1:39:18,21:18:644:21:750:-56.0854,0,-46.5504	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/1:12:7,5:7:244:5:180:-12.9397,0,-18.6867	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.492	0/1:103:48,55:48:1708:55:1964:-146.029,0,-122.939	0/0:124:122,1:122:4372:1:36:0,-33.7867,-389.731	0/1:107:43,64:43:1536:64:2300:-175.051,0,-106.19	0/1:76:35,41:35:1256:41:1476:-110.181,0,-90.2171	0/1:57:28,29:28:1000:29:1036:-76.3952,0,-73.1563	0/1:82:44,38:44:1568:38:1364:-98.3759,0,-116.084	0/0:246:246,0:246:8808:0:0:0,-74.0534,-790.425	0/0:202:200,0:200:7123:0:0:0,-60.206,-640.162	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5005	0/1:123:54,69:54:1920:69:2457:-184.357,0,-135.863	0/0:109:107,2:107:3809:2:72:0,-25.9755,-333.565	0/0:93:93,0:93:3320:0:0:0,-27.9958,-297.442	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9612	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:28:22,6:22:784:6:216:-11.3617,0,-62.4192	0/1:135:69,66:69:2467:66:2361:-172.109,0,-181.475	0/1:121:52,69:52:1860:69:2476:-186.669,0,-131.075	0/1:40:18,21:18:644:21:756:-56.2496,0,-46.1548	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:73:48,25:48:1691:25:896:-58.8789,0,-130.134	0/1:31:19,12:19:667:12:432:-29.881,0,-50.9326	0/1:100:55,45:55:1963:45:1612:-115.267,0,-146.788	0/1:28:9,19:9:315:19:684:-53.4615,0,-20.2551	0/1:43:23,20:23:828:20:720:-52.1845,0,-61.4171	0/0:94:94,0:94:3339:0:0:0,-28.2968,-300.385	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.388	0/0:95:95,0:95:3384:0:0:0,-28.5978,-304.041	0/1:61:34,27:34:1220:27:972:-69.4351,0,-91.6676	0/1:67:38,29:38:1348:29:1040:-73.7454,0,-101.349	0/1:109:39,70:39:1396:70:2493:-191.809,0,-92.9052	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7889	0/0:123:123,0:123:4400:0:0:0,-37.0267,-395.471	0/0:40:40,0:40:1432:0:0:0,-12.0412,-128.462	0/1:16:5,11:5:176:11:396:-31.1663,0,-11.3685	0/1:54:29,25:29:1040:25:890:-64.1344,0,-77.1212	0/1:34:18,16:18:648:16:576:-41.94,0,-48.3974	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.32966	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.7852	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.034	0/0:78:78,0:78:2773:0:0:0,-23.4803,-249.629	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:128:127,0:127:4517:0:0:0,-38.2308,-406.198	0/0:144:144,0:144:5123:0:0:0,-43.3483,-459.987	0/1:41:23,18:23:816:18:648:-46.2397,0,-61.3745	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.068	0/1:85:46,39:46:1632:39:1385:-99.3597,0,-120.809	0/1:111:40,71:40:1440:71:2537:-195.165,0,-96.4248	0/1:20:12,8:12:420:8:273:-18.8796,0,-32.1134	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6188	0/1:35:17,18:17:600:18:648:-48.1158,0,-43.7813	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2343	0/0:81:81,0:81:2868:0:0:0,-24.3834,-257.83	0/1:50:29,21:29:1036:21:748:-52.5938,0,-77.7951	0/0:117:117,0:117:4144:0:0:0,-35.2205,-372.541	0/1:91:52,39:52:1839:39:1392:-98.1853,0,-137.979	0/1:67:47,20:47:1668:20:716:-44.5987,0,-130.209	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.687	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.138	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.064	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.601	0/1:41:17,24:17:612:24:860:-65.3796,0,-43.0643	0/1:62:37,25:37:1293:25:900:-62.6572,0,-97.9929	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.092	0/1:102:55,47:55:1976:47:1675:-120.332,0,-147.281	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1716	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.095	0/0:41:40,0:40:1427:0:0:0,-12.0412,-128.335	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:93:47,46:47:1662:46:1634:-119.346,0,-121.792	0/1:38:17,21:17:570:21:752:-56.5671,0,-40.1286	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.126	0/0:69:69,0:69:2459:0:0:0,-20.7711,-220.993
chr07	2506740	.	TAC	GAT,GAC	123725	PASS	AB=0.524188,0.469764;ABP=18.9777,27.9594;AC=135,53;AF=0.718085,0.281915;AN=188;AO=4500,1482;CIGAR=1X1M1X,1X2M;DP=6018;DPB=6018.33;DPRA=32.3441,0.96502;EPP=9774.64,3221.13;EPPR=7.35324;GTI=2;LEN=3,1;MEANALT=1.86022,2.23636;MQM=58.316,59.9514;MQMR=60;NS=94;NUMALT=2;ODDS=4.03956;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=156381,52615;QR=50;RO=2;RPL=4500,1482;RPP=9774.64,3221.13;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=4500,1482;SAP=9774.64,3221.13;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,27,25:0:0:27,25:945,887:-149.189,-72.3395,-64.2117,-76.9175,0,-69.3917	1/2:49:0,32,17:0:0:32,17:1095,599:-137.93,-49.1206,-39.4876,-89.1582,0,-84.0407	1/2:211:0,105,106:0:0:105,106:3643,3767:-602.074,-307.311,-275.703,-295.113,0,-263.204	1/2:106:0,71,35:0:0:71,35:2448,1256:-301.374,-102.809,-81.4361,-198.919,0,-188.383	1/1:37:0,37,0:0:0:37,0:1280,0:-115.494,-11.1381,0,-115.494,-11.1381,-115.494	1/1:12:0,11,0:0:0:11,0:383,0:-34.5552,-3.31133,0,-34.5552,-3.31133,-34.5552	1/2:39:0,23,16:0:0:23,16:795,567:-111.082,-46.544,-39.6203,-64.8886,0,-60.0721	1/2:67:0,37,30:0:0:37,30:1291,1055:-191.113,-86.2291,-75.091,-105.234,0,-96.2035	1/1:73:0,73,0:0:0:73,0:2535,0:-228.282,-21.9752,0,-228.282,-21.9752,-228.282	1/2:40:0,21,18:0:0:21,18:724,644:-111.358,-52.6164,-46.2948,-58.8356,0,-53.417	1/1:30:0,30,0:0:0:30,0:1034,0:-93.3518,-9.0309,0,-93.3518,-9.0309,-93.3518	1/2:66:0,38,28:0:0:38,28:1324,972:-186.62,-79.3603,-67.9212,-107.607,0,-99.1777	1/1:53:0,52,0:0:0:52,0:1774,0:-159.647,-15.6536,0,-159.647,-15.6536,-159.647	1/2:49:0,31,18:0:0:31,18:1081,612:-137.877,-49.979,-40.6471,-88.2413,0,-82.8228	1/2:34:0,18,16:0:0:18,16:619,563:-96.3918,-46.1827,-40.7641,-50.5569,0,-45.7404	1/2:37:0,19,18:0:0:19,18:678,644:-108.144,-52.8721,-47.1525,-55.6293,0,-50.2108	1/2:19:0,11,8:0:0:11,8:396,284:-55.8096,-23.4951,-20.1838,-32.6714,0,-30.2632	1/2:13:0,8,5:0:0:8,5:276,180:-37.4592,-15.0469,-12.6387,-22.7664,0,-21.2612	1/1:35:0,35,0:0:0:35,0:1229,0:-110.87,-10.5361,0,-110.87,-10.5361,-110.87	1/2:103:0,49,54:0:0:49,54:1724,1905:-295.743,-155.47,-140.72,-140.624,0,-124.369	1/1:127:0,126,1:0:0:126,1:4382,36:-393.885,-37.9298,0,-390.947,-34.6325,-390.646	1/2:108:0,44,64:0:0:44,64:1545,2296:-313.281,-187.635,-174.39,-126,0,-106.734	1/2:77:0,38,39:0:0:38,39:1270,1392:-216.486,-113.838,-102.399,-102.993,0,-91.2532	1/2:56:0,28,28:0:0:28,28:993,996:-162.427,-81.526,-73.0972,-81.2558,0,-72.827	1/2:80:0,42,38:0:0:42,38:1497,1325:-229.507,-108.108,-95.465,-121.751,0,-110.311	1/1:255:0,255,0:0:0:255,0:8926,0:-801.085,-76.7627,0,-801.085,-76.7627,-801.085	1/1:204:0,204,0:0:0:204,0:7119,0:-640.142,-61.4101,0,-640.142,-61.4101,-640.142	1/1:28:0,28,0:0:0:28,0:966,0:-86.6626,-8.42884,0,-86.6626,-8.42884,-86.6626	1/2:122:0,54,68:0:0:54,68:1893,2440:-353.251,-199.326,-183.07,-154.22,0,-133.75	1/1:115:0,111,2:0:0:111,2:3846,72:-344.497,-33.4143,0,-338.622,-27.5247,-338.02	1/1:93:0,91,0:0:0:91,0:3179,0:-285.516,-27.3937,0,-285.516,-27.3937,-285.516	1/2:5:0,4,1:0:0:4,1:128,36:-13.5778,-3.29724,-2.09312,-10.6323,0,-10.3313	1/1:22:0,22,0:0:0:22,0:769,0:-69.4853,-6.62266,0,-69.4853,-6.62266,-69.4853	1/1:11:0,11,0:0:0:11,0:390,0:-35.4338,-3.31133,0,-35.4338,-3.31133,-35.4338	1/1:28:0,28,0:0:0:28,0:980,0:-88.5111,-8.42884,0,-88.5111,-8.42884,-88.5111	1/2:28:0,22,6:0:0:22,6:765,203:-78.9636,-16.7942,-10.1715,-62.5096,0,-60.7034	1/2:135:1,73,61:1:23:73,61:2555,2135:-379.421,-172.054,-151.845,-206.019,0,-189.424	1/2:117:0,52,61:0:0:52,61:1845,2184:-328.296,-178.129,-162.476,-150.189,0,-131.826	1/2:40:0,18,22:0:0:18,22:636,791:-116.636,-64.8788,-59.4602,-52.1132,0,-45.4906	1/1:2:0,2,0:0:0:2,0:62,0:-5.88871,-0.60206,0,-5.88871,-0.60206,-5.88871	1/2:71:0,45,24:0:0:45,24:1592,852:-199.101,-69.5162,-55.9699,-129.678,0,-122.453	1/2:31:0,19,12:0:0:19,12:669,419:-88.8537,-34.4283,-28.7088,-54.7754,0,-51.163	1/2:101:0,59,42:0:0:59,42:2053,1512:-290.589,-123.731,-105.971,-167.212,0,-154.569	1/2:28:0,9,19:0:0:9,19:313,665:-79.8983,-54.4532,-51.7439,-25.7934,0,-20.0739	1/2:42:0,23,19:0:0:23,19:792,671:-119.218,-54.9962,-48.0725,-64.5706,0,-58.851	1/1:96:0,94,0:0:0:94,0:3252,0:-292.197,-28.2968,0,-292.197,-28.2968,-292.197	1/1:48:0,47,0:0:0:47,0:1632,0:-146.345,-14.1484,0,-146.345,-14.1484,-146.345	1/1:99:0,98,0:0:0:98,0:3389,0:-304.527,-29.5009,0,-304.527,-29.5009,-304.527	1/2:60:0,34,26:0:0:34,26:1197,913:-172.005,-74.6572,-64.4222,-97.699,0,-89.8723	1/2:68:0,38,29:0:0:38,29:1316,1044:-192.147,-85.2623,-73.8232,-106.955,0,-98.2253	1/2:107:0,41,66:0:0:41,66:1448,2368:-311.386,-193.51,-181.168,-118.231,0,-98.3627	1/1:6:0,6,0:0:0:6,0:186,0:-17.045,-1.80618,0,-17.045,-1.80618,-17.045	1/1:129:0,129,0:0:0:129,0:4483,0:-402.814,-38.8329,0,-402.814,-38.8329,-402.814	1/1:41:0,41,0:0:0:41,0:1435,0:-128.76,-12.3422,0,-128.76,-12.3422,-128.76	1/2:17:0,5,12:0:0:5,12:180,432:-50.2959,-35.6088,-34.1037,-15.0469,0,-11.4346	1/2:52:0,27,24:0:0:27,24:927,842:-143.33,-68.4851,-60.3573,-74.8323,0,-67.6076	1/2:33:0,18,15:0:0:18,15:630,536:-95.29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chr07	2518218	.	T	C	36499.2	PASS	AB=0.5118;ABP=8.08363;AC=52;AF=0.27957;AN=186;AO=2162;CIGAR=1X;DP=8199;DPB=8199;DPRA=0.975097;EPP=4689.05;EPPR=12939;GTI=1;LEN=1;MEANALT=1;MQM=59.9977;MQMR=60;NS=93;NUMALT=1;ODDS=2.89221;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77199;QR=214958;RO=6037;RPL=2161;RPP=4689.05;RPPR=12939;RPR=1;RUN=1;SAF=0;SAP=4697.73;SAR=2162;SRF=0;SRP=13112.2;SRR=6037;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:21,31:21:744:31:1116:-85.0981,0,-51.6308	0/1:127:65,62:65:2317:62:2228:-162.553,0,-170.558	0/1:135:58,77:58:2043:77:2755:-207.552,0,-143.497	0/1:235:121,114:121:4322:114:4055:-294.392,0,-318.411	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.253	0/0:55:55,0:55:1927:0:0:0,-16.5566,-173.701	0/1:118:54,64:54:1917:64:2296:-171.379,0,-137.284	0/1:138:74,64:74:2640:64:2280:-163.92,0,-196.305	0/0:113:113,0:113:3984:0:0:0,-34.0164,-358.749	0/1:122:73,49:73:2601:49:1750:-121.058,0,-197.611	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:30:11,19:11:396:19:679:-52.4079,0,-26.9518	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:26:8,18:8:288:18:648:-50.8251,0,-18.4406	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	0/1:22:13,9:13:464:9:320:-22.5197,0,-35.4748	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:186:99,87:99:3522:87:3112:-224.314,0,-261.196	0/0:129:129,0:129:4579:0:0:0,-38.8329,-412.274	0/1:133:51,82:51:1813:82:2918:-222.815,0,-123.413	0/1:68:37,31:37:1313:31:1112:-79.9213,0,-97.9997	0/1:130:78,52:78:2796:52:1868:-129.265,0,-212.746	0/1:61:39,22:39:1404:22:764:-50.7139,0,-108.296	0/0:334:334,0:334:11863:0:0:0,-100.544,-1067.53	0/0:201:201,0:201:7162:0:0:0,-60.507,-644.637	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:262:132,130:132:4695:130:4655:-340.241,0,-343.838	0/0:122:118,4:118:4183:4:144:0,-23.412,-363.337	0/0:231:231,0:231:8258:0:0:0,-69.5379,-743.228	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:10:6,4:6:216:4:135:-9.47221,0,-16.7802	0/1:89:33,56:33:1188:56:2012:-154.561,0,-80.4369	0/1:167:88,79:88:3152:79:2806:-202.505,0,-233.633	0/1:22:9,13:9:320:13:464:-35.4748,0,-22.5197	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:108:67,41:67:2382:41:1457:-98.9127,0,-182.123	0/1:18:7,11:7:237:11:396:-30.5642,0,-16.2405	0/1:151:85,66:85:3040:66:2342:-165.582,0,-228.375	0/1:28:16,12:16:572:12:432:-30.7924,0,-43.3846	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/0:138:138,0:138:4945:0:0:0,-41.5421,-445.197	0/0:90:90,0:90:3193:0:0:0,-27.0927,-287.594	0/0:203:203,0:203:7243:0:0:0,-61.1091,-651.921	0/1:143:71,72:71:2525:72:2575:-188.952,0,-184.453	0/1:99:46,53:46:1648:53:1885:-140.125,0,-118.807	0/1:121:53,68:53:1855:68:2444:-183.79,0,-130.799	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:101:101,0:101:3597:0:0:0,-30.404,-323.936	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:140:57,83:57:2032:83:2971:-225.478,0,-141.008	0/1:43:18,25:18:648:25:896:-68.0161,0,-45.7076	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:129:129,0:129:4617:0:0:0,-38.8329,-415.692	0/0:63:62,1:62:2197:1:36:0,-15.3666,-194.396	.:.:.:.:.:.:.:.	0/0:276:276,0:276:9846:0:0:0,-83.0843,-886.085	0/0:184:183,1:183:6545:1:36:0,-51.7912,-585.533	0/1:38:16,22:16:561:22:792:-60.1665,0,-39.378	0/0:92:91,1:91:3199:1:36:0,-24.0965,-284.534	0/1:274:128,146:128:4562:146:5196:-385.297,0,-328.262	0/1:98:27,71:27:964:71:2544:-199.71,0,-57.5759	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/1:57:21,36:21:752:36:1296:-99.7852,0,-50.8475	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:151:151,0:151:5374:0:0:0,-45.4555,-483.792	0/1:52:33,19:33:1165:19:684:-46.2368,0,-89.5014	0/0:200:196,4:196:6949:4:140:0,-47.2614,-612.53	0/1:191:83,108:83:2954:108:3831:-287.487,0,-208.594	0/1:143:71,72:71:2529:72:2554:-187.06,0,-184.813	0/0:117:116,1:116:4149:1:36:0,-31.6222,-369.993	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:108:108,0:108:3830:0:0:0,-32.5112,-344.896	0/0:99:99,0:99:3514:0:0:0,-29.802,-316.469	0/0:233:233,0:233:8238:0:0:0,-70.14,-741.435	0/1:60:22,38:22:788:38:1364:-104.999,0,-53.183	0/1:31:22,9:22:788:9:315:-19.3553,0,-61.9129	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:63:35,28:35:1237:28:992:-70.6295,0,-92.6674	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/1:37:18,19:18:648:19:676:-50.0299,0,-47.5138	0/1:25:7,18:7:252:18:640:-50.4036,0,-15.5032	0/0:149:149,0:149:5325:0:0:0,-44.8535,-479.383	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391
chr07	2636221	.	TGAT	CGAC,CGAT	231006	PASS	AB=0.421337,0.575015;ABP=371.287,337.917;AC=132,56;AF=0.702128,0.297872;AN=188;AO=7079,3976;CIGAR=1X2M1X,1X3M;DP=11093;DPB=11099.8;DPRA=22.8235,1.42089;EPP=15374.9,8636.78;EPPR=16.0391;GTI=5;LEN=4,1;MEANALT=1.98901,2.26866;MQM=36.447,46.5757;MQMR=54;NS=94;NUMALT=2;ODDS=0.624547;PAIRED=0,0;PAIREDR=0;PAO=27,0;PQA=860,0;PQR=0;PRO=0;QA=243768,136117;QR=208;RO=6;RPL=4492,2029;RPP=1116.21,6.68258;RPPR=4.45795;RPR=2587,1947;RUN=1,1;SAF=4492,2029;SAP=1116.21,6.68258;SAR=2587,1947;SRF=4;SRP=4.45795;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,20,21:0:0:20,21:691,658:-91.8966,-49.5088,-43.4882,-42.6689,0,-36.3473	1/2:129:0,44,85:0:0:44,85:1537,2872:-315.555,-220.288,-207.043,-95.2386,0,-69.6511	1/2:142:0,57,84:0:0:57,84:1971,2880:-337.096,-217.921,-200.762,-119.161,0,-93.8748	1/2:181:0,84,95:0:0:84,95:2908,3258:-420.454,-249.74,-224.454,-170.647,0,-142.049	1/1:44:0,44,0:0:0:44,0:1529,0:-103.997,-13.2453,0,-103.997,-13.2453,-103.997	1/1:49:0,48,1:0:0:48,1:1685,35:-113.175,-14.4494,0,-110.596,-11.5514,-110.295	1/2:150:0,65,84:0:0:65,84:2239,2855:-350.358,-220.39,-200.823,-129.896,0,-104.61	1/2:161:0,80,81:0:0:80,81:2756,2824:-376.984,-217.455,-193.373,-159.485,0,-135.101	1/1:80:0,77,1:0:0:77,1:2619,35:-175.144,-23.1793,0,-172.565,-20.599,-172.264	1/2:116:0,41,75:0:0:41,75:1391,2573:-292.324,-199.79,-187.448,-92.8339,0,-70.2567	1/1:132:0,131,0:0:0:131,0:4555,0:-294.067,-39.4349,0,-294.067,-39.4349,-294.067	1/2:142:1,75,66:1:35:75,66:2547,2188:-310.398,-161.697,-141.955,-146.104,0,-129.071	1/1:123:0,123,0:0:0:123,0:4263,0:-287.421,-37.0267,0,-287.421,-37.0267,-287.421	1/2:193:1,85,107:1:36:85,107:2939,3648:-442.479,-276.569,-253.897,-163.222,0,-133.928	1/2:133:0,47,86:0:0:47,86:1646,2904:-318.194,-224.882,-210.734,-93.5901,0,-67.7015	1/2:99:0,35,64:0:0:35,64:1214,2213:-246.826,-171.647,-161.111,-75.4717,0,-56.2058	1/2:128:0,60,68:0:0:60,68:2066,2278:-300.09,-172.703,-154.641,-127.341,0,-106.871	1/2:94:0,48,46:0:0:48,46:1630,1587:-216.17,-120.575,-106.126,-95.8851,0,-82.0377	1/1:70:0,70,0:0:0:70,0:2418,0:-168.782,-21.0721,0,-168.782,-21.0721,-168.782	1/2:327:0,172,152:0:0:172,152:5963,5266:-833.911,-413.944,-362.167,-420.049,0,-374.293	1/1:127:0,127,0:0:0:127,0:4295,0:-299.985,-38.2308,0,-299.985,-38.2308,-299.985	1/2:71:0,18,53:0:0:18,53:628,1799:-182.958,-137.914,-132.495,-45.359,0,-29.4044	1/2:112:0,40,72:0:0:40,72:1386,2475:-274.432,-193.965,-181.924,-80.7511,0,-59.077	1/2:96:0,36,59:0:0:36,59:1208,2083:-244.912,-165.232,-154.395,-79.7726,0,-62.0118	1/2:81:0,34,47:0:0:34,47:1162,1619:-193.982,-126.125,-115.89,-68.1432,0,-53.9948	1/1:347:0,346,1:0:0:346,1:12014,32:-936.865,-104.156,0,-934.286,-101.258,-933.985	1/1:237:0,236,0:0:0:236,0:8089,0:-564.071,-71.0431,0,-564.071,-71.0431,-564.071	1/1:61:0,61,0:0:0:61,0:2085,0:-139.383,-18.3628,0,-139.383,-18.3628,-139.383	1/2:313:0,172,141:0:0:172,141:5918,4775:-768.188,-365.779,-314.002,-402.718,0,-360.273	1/2:71:0,62,7:0:0:62,7:2154,248:-150.653,-19.1343,-0.470454,-131.522,0,-129.415	1/1:83:0,82,1:0:0:82,1:2815,32:-185.966,-24.6845,0,-183.387,-21.7862,-183.086	2/2:7:0,0,7:0:0:0,7:0,243:-22.2075,-22.2075,-22.2075,-2.10721,-2.10721,0	1/1:14:0,14,0:0:0:14,0:475,0:-30.6933,-4.21442,0,-30.6933,-4.21442,-30.6933	1/1:7:0,7,0:0:0:7,0:237,0:-16.8849,-2.10721,0,-16.8849,-2.10721,-16.8849	1/1:1:0,1,0:0:0:1,0:36,0:-2.27887,-0.30103,0,-2.27887,-0.30103,-2.27887	1/2:2:0,1,1:0:0:1,1:36,36:-4.69694,-2.99799,-2.69696,-1.97784,0,-1.67681	1/2:366:0,183,182:0:0:183,182:6327,6193:-901.824,-482.351,-427.263,-419.422,0,-364.634	1/2:140:0,57,83:0:0:57,83:1944,2901:-348.511,-228.627,-211.468,-120.18,0,-95.195	1/2:115:0,61,54:0:0:61,54:2096,1859:-255.639,-139.465,-121.102,-116.459,0,-100.203	1/2:4:0,3,1:0:0:3,1:96,35:-7.97244,-2.89801,-1.99492,-5.37038,0,-5.06935	1/2:109:0,36,72:0:0:36,72:1263,2460:-273.574,-189.461,-178.624,-84.1656,0,-62.4915	1/2:71:0,33,37:0:0:33,37:1145,1247:-160.259,-94.8266,-84.8926,-65.5135,0,-54.3753	1/2:158:0,65,93:0:0:65,93:2232,3254:-392.015,-250.763,-231.196,-141.55,0,-113.554	1/2:182:0,74,108:0:0:74,108:2540,3649:-433.44,-281.961,-259.685,-151.765,0,-119.254	1/2:89:0,45,44:0:0:45,44:1547,1510:-204.975,-117.073,-103.527,-88.1915,0,-74.9462	1/1:109:0,109,0:0:0:109,0:3722,0:-268.859,-32.8123,0,-268.859,-32.8123,-268.859	1/1:99:0,99,0:0:0:99,0:3364,0:-228.691,-29.802,0,-228.691,-29.802,-228.691	1/1:153:0,153,0:0:0:153,0:5239,0:-392.482,-46.0576,0,-392.482,-46.0576,-392.482	1/2:112:0,45,67:0:0:45,67:1574,2329:-275.147,-181.675,-168.128,-93.7648,0,-73.5958	1/2:165:0,45,120:0:0:45,120:1532,4133:-408.1,-320.983,-307.437,-87.3885,0,-51.2649	1/2:193:0,88,104:0:0:88,104:3054,3597:-500.101,-284.586,-258.096,-215.476,0,-184.169	1/1:9:0,9,0:0:0:9,0:284,0:-20.0279,-2.70927,0,-20.0279,-2.70927,-20.0279	1/1:99:0,97,0:0:0:97,0:3353,0:-231.041,-29.1999,0,-231.041,-29.1999,-231.041	1/1:62:0,62,0:0:0:62,0:2143,0:-159.833,-18.6639,0,-159.833,-18.6639,-159.833	2/2:5:0,0,5:0:0:0,5:0,179:-16.1848,-16.1848,-16.1848,-1.50515,-1.50515,0	1/2:233:0,73,160:0:0:73,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chr07	2636278	.	C	T	127272	PASS	AB=0.514864;ABP=11.9189;AC=135;AF=0.718085;AN=188;AO=6218;CIGAR=1X;DP=8495;DPB=8495;DPRA=13.0384;EPP=13505.2;EPPR=4938.77;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.9519;MQMR=59.9996;NS=94;NUMALT=1;ODDS=0.880169;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220420;QR=81145;RO=2273;RPL=6218;RPP=13505.2;RPPR=4938.77;RPR=0;RUN=1;SAF=0;SAP=13505.2;SAR=6218;SRF=0;SRP=4938.77;SRR=2273;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:16,20:16:572:20:701:-52.5746,0,-40.9763	0/1:146:84,62:84:3012:62:2178:-152.333,0,-227.36	0/1:121:59,62:59:2078:62:2201:-161.929,0,-150.863	0/1:98:42,56:42:1477:56:1979:-148.819,0,-103.722	1/1:48:0,48:0:0:48:1689:-152.294,-14.4494,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:82:41,41:41:1464:41:1461:-107.1,0,-107.372	0/1:129:79,50:79:2806:50:1777:-121.188,0,-213.944	1/1:63:0,63:0:0:63:2241:-201.951,-18.9649,0	0/1:122:43,79:43:1544:79:2805:-215.964,0,-102.527	1/1:65:0,65:0:0:65:2320:-209.058,-19.567,0	0/1:91:45,46:45:1596:46:1648:-121.215,0,-116.537	1/1:86:0,86:0:0:86:3080:-277.428,-25.8886,0	0/1:89:42,47:42:1495:47:1661:-122.983,0,-108.052	0/1:83:44,39:44:1584:39:1404:-101.674,0,-117.866	0/1:71:32,39:32:1148:39:1381:-103.214,0,-82.2567	0/1:97:39,58:39:1396:58:2076:-157.911,0,-96.7392	0/1:62:28,34:28:999:34:1205:-90.09,0,-71.5606	1/1:47:1,46:1:36:46:1618:-142.307,-10.5501,0	0/1:327:102,225:102:3630:225:7966:-618.527,0,-228.466	1/1:182:0,182:0:0:182:6413:-577.262,-54.7875,0	0/1:37:22,15:22:784:15:540:-37.7984,0,-59.7458	0/1:79:42,37:42:1508:37:1309:-94.3191,0,-112.233	0/1:111:44,67:44:1576:67:2352:-178.495,0,-108.717	0/1:70:31,39:31:1112:39:1377:-103.132,0,-79.3192	1/1:229:2,227:2:68:227:8032:-716.441,-62.4782,0	1/1:214:0,214:0:0:214:7621:-685.925,-64.4204,0	1/1:42:1,41:1:32:41:1460:-128.495,-9.44395,0	0/1:165:61,104:61:2169:104:3671:-280.922,0,-145.805	1/1:79:2,77:2:72:77:2687:-235.236,-16.9446,0	1/1:74:1,73:1:36:73:2581:-228.57,-18.6779,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:209:102,107:102:3652:107:3812:-280.36,0,-265.969	0/1:108:51,57:51:1832:57:2003:-148.029,0,-132.65	0/1:71:32,39:32:1148:39:1385:-103.575,0,-82.2567	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:84:33,51:33:1180:51:1779:-135.102,0,-81.2215	0/1:38:13,25:13:464:25:896:-69.5212,0,-30.6584	0/1:110:42,68:42:1477:68:2372:-180.62,0,-100.109	0/1:111:55,55:55:1960:55:1960:-143.242,0,-143.242	0/1:49:23,26:23:824:26:928:-69.0878,0,-59.7328	1/1:47:0,47:0:0:47:1665:-150.135,-14.1484,0	1/1:104:0,104:0:0:104:3684:-331.743,-31.3071,0	1/1:178:0,177:0:0:177:6245:-561.793,-53.2823,0	0/1:86:38,48:38:1368:48:1701:-127.485,0,-97.5322	0/1:109:65,44:65:2336:44:1568:-108.599,0,-177.687	0/1:135:75,60:75:2684:60:2144:-152.589,0,-201.166	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:99:0,99:0:0:99:3494:-314.671,-29.802,0	1/1:35:0,35:0:0:35:1214:-109.557,-10.5361,0	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.5925	0/1:203:125,78:125:4461:78:2768:-188.254,0,-340.551	0/1:38:22,16:22:788:16:572:-40.3743,0,-59.8057	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:45:0,44:0:0:44:1529:-137.527,-13.2453,0	1/1:116:1,115:1:36:115:4104:-365.945,-31.3212,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:147:1,146:1:36:146:5190:-463.642,-40.6531,0	1/1:153:0,153:0:0:153:5459:-491.44,-46.0576,0	0/1:48:21,27:21:732:27:934:-69.9193,0,-51.7492	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	0/1:177:107,70:107:3817:70:2447:-167.042,0,-290.444	0/1:123:84,39:84:2985:39:1321:-82.1507,0,-231.855	0/1:38:18,20:18:640:20:697:-51.6115,0,-46.4902	1/1:104:0,104:0:0:104:3679:-331.272,-31.3071,0	0/1:78:38,40:38:1349:40:1424:-104.977,0,-98.2279	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	1/1:35:0,35:0:0:35:1225:-110.552,-10.5361,0	0/1:92:45,47:45:1612:47:1684:-124.152,0,-117.675	1/1:106:1,105:1:36:105:3706:-330.145,-28.3109,0	1/1:159:0,159:0:0:159:5685:-511.768,-47.8638,0	0/1:68:28,39:28:989:39:1381:-104.059,0,-68.7934	1/1:119:1,118:1:36:118:4197:-374.313,-32.2243,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:115:2,113:2:72:113:4001:-353.445,-27.7817,0	1/1:214:1,213:1:36:213:7537:-674.774,-60.8221,0	1/1:198:0,198:0:0:198:7012:-631.146,-59.6039,0	0/1:103:55,48:55:1968:48:1705:-122.728,0,-146.389	0/1:75:39,36:39:1404:36:1276:-92.5649,0,-104.082	1/1:109:0,109:0:0:109:3885:-349.844,-32.8123,0	0/1:189:87,102:87:3128:102:3625:-269.561,0,-224.851	1/1:47:0,47:0:0:47:1684:-151.777,-14.1484,0	1/1:107:0,107:0:0:107:3844:-346.154,-32.2102,0	1/1:94:0,94:0:0:94:3365:-303.064,-28.2968,0	0/1:44:17,27:17:608:27:953:-72.838,0,-41.8067	0/1:74:31,43:31:1089:43:1528:-115.537,0,-76.0411	0/1:119:87,32:87:3124:32:1148:-67.8073,0,-245.563	1/1:106:0,106:0:0:106:3728:-335.72,-31.9092,0	1/1:139:2,137:2:72:137:4882:-432.696,-35.0064,0
chr07	2665356	.	T	C	88299.6	PASS	AB=0.488186;ABP=8.9108;AC=64;AF=0.340426;AN=188;AO=4532;CIGAR=1X;DP=11377;DPB=11377;DPRA=1.28756;EPP=9844.12;EPPR=14860.2;GTI=3;LEN=1;MEANALT=1.04478;MQM=59.9629;MQMR=59.9959;NS=94;NUMALT=1;ODDS=2.96108;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162073;QR=244585;RO=6842;RPL=4532;RPP=9844.12;RPPR=14860.2;RPR=0;RUN=1;SAF=0;SAP=9844.12;SAR=4532;SRF=0;SRP=14860.2;SRR=6842;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:24,18:24:856:18:632:-44.5635,0,-64.7178	0/1:196:98,97:98:3516:97:3469:-253.36,0,-257.589	0/1:109:45,64:45:1608:64:2300:-173.344,0,-112.198	0/1:142:67,75:67:2400:75:2692:-199.778,0,-173.511	0/0:105:103,2:103:3665:2:72:0,-24.7714,-323.217	0/0:132:131,1:131:4666:1:36:0,-36.1377,-416.502	0/1:146:60,86:60:2141:86:3069:-232.487,0,-149.003	0/1:150:88,62:88:3137:62:2224:-155.27,0,-237.4	0/0:163:163,0:163:5836:0:0:0,-49.0679,-525.352	0/1:57:44,13:44:1580:13:449:-23.5788,0,-125.333	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/1:69:45,24:45:1612:24:860:-56.9508,0,-124.599	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.546	0/1:87:47,40:47:1688:40:1432:-102.988,0,-126.017	0/1:52:38,14:38:1368:14:504:-30.0445,0,-107.767	0/1:62:44,18:44:1580:18:648:-39.988,0,-123.828	0/1:81:55,26:55:1980:26:932:-59.8154,0,-154.091	0/1:64:44,20:44:1580:20:716:-45.5018,0,-123.226	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:147:80,67:80:2848:67:2408:-172.725,0,-212.308	0/0:159:157,1:157:5583:1:36:0,-44.2494,-499.068	0/1:50:16,34:16:572:34:1204:-93.6143,0,-36.7619	0/1:71:32,39:32:1152:39:1391:-104.116,0,-82.617	0/1:107:54,53:54:1940:53:1896:-138.338,0,-142.666	0/1:79:38,41:38:1364:41:1445:-106.562,0,-99.2793	0/0:268:267,1:267:9576:1:36:0,-77.0778,-858.194	0/0:234:234,0:234:8350:0:0:0,-70.441,-751.507	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/1:223:108,115:108:3845:115:4114:-303.309,0,-279.117	0/1:115:101,14:101:3613:14:504:-11.0796,0,-290.756	0/0:118:118,0:118:4183:0:0:0,-35.5215,-376.65	1/1:494:1,492:1:36:492:17559:-1576.31,-145.169,0	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/1:13:8,5:8:273:5:180:-12.6387,0,-20.9868	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:388:3,385:3:108:385:13758:-1227.91,-106.724,0	0/1:166:113,53:113:4013:53:1896:-120.947,0,-311.389	0/1:98:39,59:39:1388:59:2101:-159.857,0,-95.718	0/1:121:25,96:25:896:96:3428:-272.31,0,-44.5357	1/1:268:3,265:3:108:265:9474:-842.542,-70.6009,0	0/1:110:63,47:63:2260:47:1684:-118.734,0,-170.549	0/1:68:17,51:17:612:51:1832:-144.691,0,-34.9434	0/1:140:63,77:63:2248:77:2752:-205.778,0,-160.439	0/1:81:71,10:71:2537:10:360:-8.36087,0,-204.196	0/1:66:52,14:52:1868:14:504:-25.8301,0,-148.531	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.973	0/0:125:125,0:125:4476:0:0:0,-37.6287,-403.009	0/0:160:159,1:159:5708:1:36:0,-44.5665,-510.237	0/1:107:52,55:52:1853:55:1980:-146.264,0,-134.838	0/1:169:88,81:88:3160:81:2889:-209.371,0,-233.75	0/1:140:72,68:72:2557:68:2436:-177.351,0,-188.235	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:114:112,2:112:3992:2:72:0,-27.4807,-352.635	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	1/1:380:9,371:9:324:371:13277:-1165.2,-84.8855,0	0/1:137:81,56:81:2912:56:2004:-139.392,0,-221.073	0/1:61:35,26:35:1252:26:932:-65.836,0,-94.6222	1/1:278:2,276:2:72:276:9853:-879.849,-76.8496,0	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:146:146,0:146:5209:0:0:0,-43.9504,-468.949	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	1/1:246:2,244:2:72:244:8726:-778.491,-67.2167,0	0/0:141:141,0:141:5024:0:0:0,-42.4452,-452.309	0/0:205:204,1:204:7285:1:36:0,-58.1129,-652.104	0/1:42:19,23:19:654:23:828:-61.9728,0,-46.5343	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/1:150:77,73:77:2764:73:2578:-187.112,0,-203.847	0/1:58:22,36:22:788:36:1284:-98.4037,0,-53.7851	0/1:112:16,96:16:557:96:3444:-276.457,0,-16.7402	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/1:71:49,22:49:1760:22:792:-50.2325,0,-137.311	1/1:120:10,110:10:360:110:3933:-321.413,-3.3793,0	0/0:75:75,0:75:2646:0:0:0,-22.5772,-238.385	0/1:34:25,9:25:896:9:320:-18.9073,0,-70.7253	0/0:211:211,0:211:7564:0:0:0,-63.5173,-680.798	0/0:128:128,0:128:4576:0:0:0,-38.5318,-412.006	0/1:111:60,51:60:2144:51:1824:-131.027,0,-159.813	0/0:132:130,2:130:4648:2:72:0,-32.8992,-411.646	0/1:21:17,4:17:608:4:144:-6.99199,0,-48.7304	0/0:123:123,0:123:4365:0:0:0,-37.0267,-393.013	0/0:112:112,0:112:4008:0:0:0,-33.7154,-360.909	0/0:189:188,1:188:6705:1:36:0,-53.2964,-599.929	0/1:78:61,17:61:2188:17:608:-31.5717,0,-173.705	0/1:54:42,12:42:1497:12:428:-22.6032,0,-118.767	0/0:160:159,1:159:5700:1:36:0,-44.5665,-509.519	0/1:141:101,40:101:3616:40:1436:-87.0924,0,-283.2	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.034	0/1:193:22,171:22:788:171:6140:-494.594,0,-13.146	0/1:209:31,178:31:1097:178:6404:-513.529,0,-36.1227	0/1:54:30,24:30:1076:24:856:-61.1055,0,-80.8972	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:126:126,0:126:4505:0:0:0,-37.9298,-405.617
chr07	2665396	.	A	T	4416.93	PASS	AB=0.34034;ABP=224.203;AC=44;AF=0.234043;AN=188;AO=343;CIGAR=1X;DP=2147;DPB=2147;DPRA=1.06807;EPP=747.825;EPPR=3909.49;GTI=7;LEN=1;MEANALT=1;MQM=60;MQMR=59.9412;NS=94;NUMALT=1;ODDS=0.160623;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=12296;QR=64468;RO=1803;RPL=343;RPP=747.825;RPPR=3900.82;RPR=0;RUN=1;SAF=343;SAP=747.825;SAR=0;SRF=1802;SRP=3909.49;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:33:22,11:22:792:11:396:-26.0488,0,-61.6717	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:35:17,18:17:612:18:648:-48.1158,0,-44.8774	0/1:21:19,2:19:680:2:72:-0.515093,0,-55.2075	0/0:22:22,0:22:765:0:0:0,-6.62266,-69.1677	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:29:21,8:21:752:8:288:-17.5375,0,-59.2764	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:30:23,7:23:824:7:252:-13.9981,0,-65.4524	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.359	0/1:35:21,14:21:752:14:500:-34.8001,0,-57.4702	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29214	0/1:19:12,7:12:428:7:248:-16.9446,0,-33.1346	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:52:32,20:32:1144:20:705:-48.1192,0,-87.616	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:14:13,1:13:468:1:36:0,-0.616145,-38.8614	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5561	0/0:73:71,2:71:2548:2:72:0,-15.1385,-222.717	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:52:39,13:39:1404:13:468:-26.8061,0,-111.006	0/1:24:14,10:14:481:10:345:-24.1561,0,-36.3903	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:56:34,22:34:1216:22:790:-54.5677,0,-92.8889	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:41:23,18:23:824:18:644:-45.9484,0,-62.1411	0/1:17:14,3:14:504:3:108:-4.95766,0,-40.5806	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.684	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8098	0/1:23:15,8:15:536:8:284:-18.9797,0,-41.6511	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/0:39:39,0:39:1366:0:0:0,-11.7402,-123.234	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:31:28,3:28:981:3:108:-0.74324,0,-79.2691	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:18:15,3:15:521:3:108:-4.65663,0,-41.7978	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8803	0/0:70:69,0:69:2484:0:0:0,-20.7711,-223.453	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:40:22,18:22:773:18:648:-46.6107,0,-57.8483	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6786	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:35:24,11:24:864:11:392:-25.084,0,-67.5465	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7776	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4976	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5548	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:38:29,9:29:1025:9:324:-18.0667,0,-81.1215	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:48:43,5:43:1544:5:180:-2.10263,0,-124.804	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.014	0/1:26:21,5:21:756:5:180:-8.72528,0,-60.5404	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057
chr07	2665603	.	A	C	34829.4	PASS	AB=0.493845;ABP=4.37356;AC=49;AF=0.260638;AN=188;AO=2061;CIGAR=1X;DP=7667;DPB=7667;DPRA=1.09443;EPP=4357.64;EPPR=11773.5;GTI=1;LEN=1;MEANALT=1.01695;MQM=59.8729;MQMR=59.7617;NS=94;NUMALT=1;ODDS=2.02664;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73535;QR=200985;RO=5603;RPL=2047;RPP=4357.64;RPPR=11782;RPR=14;RUN=1;SAF=2061;SAP=4478.41;SAR=0;SRF=5602;SRP=12161.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:20,24:20:716:24:860:-64.4756,0,-51.4525	0/1:74:52,22:52:1872:22:792:-49.3285,0,-146.483	0/1:56:27,29:27:972:29:1044:-77.4171,0,-70.9402	0/1:154:90,64:90:3216:64:2288:-159.823,0,-243.304	0/0:61:60,1:60:2156:1:36:0,-14.7646,-190.701	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.872	0/1:83:55,28:55:1980:28:999:-65.239,0,-153.489	0/1:146:63,82:63:2256:82:2936:-220.387,0,-159.29	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.687	0/1:74:44,30:44:1580:30:1080:-75.237,0,-120.215	0/0:39:38,0:38:1364:0:0:0,-11.4391,-122.701	0/1:117:50,67:50:1796:67:2362:-177.614,0,-126.381	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.926	0/1:62:27,35:27:964:35:1256:-94.6814,0,-68.368	0/1:91:48,43:48:1728:43:1540:-111.499,0,-128.383	0/1:65:34,31:34:1208:31:1101:-79.8252,0,-89.3507	0/1:49:23,26:23:828:26:932:-69.4484,0,-60.0238	0/1:42:17,25:17:612:25:885:-67.3214,0,-42.7002	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:148:68,80:68:2448:80:2829:-210.289,0,-175.908	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.81	0/1:118:42,76:42:1497:76:2708:-208.397,0,-99.501	0/1:116:58,58:58:2088:58:2051:-149.87,0,-153.27	0/1:50:24,26:24:860:26:924:-68.4262,0,-62.6703	0/1:92:37,55:37:1324:55:1955:-148.529,0,-91.7673	0/0:207:207,0:207:7421:0:0:0,-62.3132,-667.932	0/0:224:224,0:224:8028:0:0:0,-67.4307,-722.526	0/0:49:49,0:49:1764:0:0:0,-14.7505,-158.954	0/1:153:91,62:91:3261:62:2216:-153.647,0,-247.651	0/0:96:94,2:94:3364:2:72:0,-22.0622,-296.139	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.5774	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.0666	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.29	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5474	0/0:29:28,1:28:1008:1:32:0,-5.53056,-87.6431	0/1:232:107,125:107:3840:125:4439:-329.837,0,-275.956	0/1:126:62,64:62:2224:64:2285:-167.982,0,-162.494	0/1:49:32,17:32:1148:17:608:-40.3016,0,-88.1774	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.2975	0/1:144:91,53:91:3272:53:1891:-127.119,0,-251.306	0/1:47:26,21:26:936:21:756:-54.2188,0,-70.4064	0/1:109:49,60:49:1751:60:2148:-160.774,0,-124.994	0/1:88:48,40:48:1711:40:1440:-103.407,0,-127.784	0/1:88:46,42:46:1652:42:1496:-108.419,0,-122.32	0/0:84:83,0:83:2980:0:0:0,-24.9855,-267.95	0/0:101:97,4:97:3465:4:144:0,-17.0904,-298.711	0/0:138:137,1:137:4899:1:36:0,-37.9439,-437.451	0/1:74:38,36:38:1360:36:1296:-94.6677,0,-100.424	0/1:79:38,41:38:1368:41:1463:-108.184,0,-99.6111	0/1:62:40,22:40:1432:22:783:-52.1291,0,-110.514	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/0:16:15,1:15:540:1:36:0,-1.2182,-43.9878	0/1:143:73,70:73:2616:70:2497:-181.934,0,-192.64	0/1:35:14,21:14:504:21:744:-56.7097,0,-35.162	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0178	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.628	0/0:87:87,0:87:3114:0:0:0,-26.1896,-280.485	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:164:164,0:164:5889:0:0:0,-49.3689,-529.746	0/0:119:118,1:118:4232:1:36:0,-32.2243,-377.432	0/1:44:26,18:26:928:18:640:-44.684,0,-70.548	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:151:75,76:75:2692:76:2720:-199.573,0,-197.069	0/1:102:41,61:41:1468:61:2188:-166.466,0,-101.711	0/1:31:14,17:14:504:17:612:-46.0806,0,-36.321	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.06	0/1:45:30,15:30:1076:15:540:-35.3795,0,-83.4405	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	0/0:132:132,0:132:4728:0:0:0,-39.736,-425.673	0/1:63:38,25:38:1364:25:882:-60.7307,0,-104.095	0/0:151:151,0:151:5404:0:0:0,-45.4555,-486.486	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:104:51,53:51:1805:53:1904:-140.33,0,-131.421	0/0:58:56,2:56:2004:2:72:0,-10.623,-173.791	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4478	0/0:57:56,1:56:2012:1:36:0,-13.5604,-177.75	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.227	0/0:154:153,1:153:5500:1:36:0,-42.7603,-491.439	0/1:98:47,51:47:1692:51:1826:-135.12,0,-122.695	0/1:92:46,46:46:1656:46:1639:-120.103,0,-121.634	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:176:85,91:85:3060:91:3218:-236.857,0,-222.637	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.762	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.111	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.075	0/1:44:19,25:19:684:25:895:-67.6245,0,-48.1435	0/1:73:31,42:31:1116:42:1503:-113.587,0,-78.7552	0/1:66:31,35:31:1112:35:1260:-93.8375,0,-80.5234	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.134	0/0:123:123,0:123:4424:0:0:0,-37.0267,-398.301
chr07	2726818	.	C	T	32664.9	PASS	AB=0.515789;ABP=11.0333;AC=52;AF=0.276596;AN=188;AO=1921;CIGAR=1X;DP=6926;DPB=6926;DPRA=1.29364;EPP=4139.74;EPPR=10713.3;GTI=1;LEN=1;MEANALT=1.01786;MQM=59.9531;MQMR=59.9878;NS=94;NUMALT=1;ODDS=2.95966;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68665;QR=178799;RO=5004;RPL=4;RPP=4139.74;RPPR=10721.9;RPR=1917;RUN=1;SAF=1921;SAP=4174.41;SAR=0;SRF=5003;SRP=10860.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/1:101:41,60:41:1459:60:2144:-162.824,0,-101.201	0/1:67:43,24:43:1540:24:856:-57.1921,0,-118.724	0/1:117:64,53:64:2300:53:1904:-136.417,0,-172.034	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:66:36,30:36:1292:30:1068:-76.5641,0,-96.7158	0/1:113:49,64:49:1756:64:2282:-171.606,0,-124.308	0/0:109:109,0:109:3896:0:0:0,-32.8123,-350.835	0/1:90:42,48:42:1512:48:1720:-127.993,0,-109.282	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.632	0/1:80:37,43:37:1328:43:1535:-114.36,0,-95.7398	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/1:80:41,39:41:1476:39:1386:-100.956,0,-109.054	0/1:77:46,31:46:1648:31:1112:-77.212,0,-125.429	0/1:50:28,22:28:996:22:775:-55.0197,0,-74.9034	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/1:75:34,41:34:1207:41:1472:-110.199,0,-86.358	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:88:44,44:44:1580:44:1558:-114.019,0,-116.001	0/0:249:248,1:248:8850:1:36:0,-71.3582,-792.89	0/1:63:26,37:26:928:37:1328:-100.857,0,-64.8734	0/1:52:12,40:12:424:40:1419:-112.353,0,-22.8429	0/1:60:27,33:27:972:33:1180:-88.4462,0,-69.7361	0/1:34:16,18:16:576:18:640:-47.6943,0,-41.94	0/0:226:225,1:225:8024:1:36:0,-64.4345,-718.584	0/0:133:130,3:130:4648:3:108:0,-29.9618,-408.408	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/1:123:43,80:43:1544:80:2860:-220.611,0,-102.226	0/0:95:93,2:93:3314:2:72:0,-21.7611,-291.642	0/0:95:95,0:95:3389:0:0:0,-28.5978,-305.224	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:241:129,112:129:4608:112:3991:-286.593,0,-342.337	0/1:137:60,77:60:2140:77:2752:-206.681,0,-151.627	0/1:67:37,30:37:1328:30:1071:-76.5326,0,-99.6532	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:92:53,39:53:1876:39:1396:-98.2443,0,-141.421	0/1:32:18,14:18:631:14:500:-35.7032,0,-47.4827	0/1:45:24,21:24:864:21:752:-54.4599,0,-64.5362	0/1:105:58,47:58:2075:47:1684:-120.239,0,-155.412	0/1:77:36,41:36:1279:41:1468:-109.237,0,-92.2331	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.5	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.903	0/1:78:41,37:41:1472:37:1320:-95.6216,0,-109.296	0/1:106:61,45:61:2188:45:1596:-112.019,0,-165.277	0/1:39:18,21:18:648:21:746:-55.7244,0,-46.9117	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:66:37,29:37:1305:29:1040:-74.0464,0,-97.8814	0/1:32:13,19:13:468:19:676:-51.5304,0,-32.8267	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:101:101,0:101:3619:0:0:0,-30.404,-325.915	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:127:127,0:127:4525:0:0:0,-38.2308,-407.418	0/0:134:132,2:132:4719:2:68:0,-33.8803,-418.412	0/1:67:29,38:29:1035:38:1356:-102.171,0,-73.2941	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/1:122:56,66:56:2003:66:2372:-177.012,0,-143.811	0/1:53:17,36:17:600:36:1296:-100.989,0,-38.3746	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/1:118:47,71:47:1680:71:2548:-194.049,0,-115.966	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/1:59:27,32:27:959:32:1148:-85.8691,0,-68.8646	0/0:104:104,0:104:3690:0:0:0,-31.3071,-332.302	0/0:95:95,0:95:3384:0:0:0,-28.5978,-304.777	0/1:62:31,31:31:1104:31:1103:-80.9159,0,-81.0068	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.484	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:76:35,41:35:1237:41:1468:-109.537,0,-88.754	0/0:114:114,0:114:4067:0:0:0,-34.3174,-366.217	0/1:137:76,61:76:2728:61:2179:-155.134,0,-204.522	0/1:64:30,34:30:1068:34:1224:-91.2011,0,-77.1661	0/0:144:144,0:144:5172:0:0:0,-43.3483,-465.618	0/1:179:97,81:97:3475:81:2908:-208.142,0,-259.16	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.317	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:45:23,22:23:828:22:780:-56.9767,0,-61.2978	0/1:89:34,55:34:1224:55:1968:-150.603,0,-83.6754	0/1:99:37,62:37:1316:62:2220:-170.262,0,-88.9398	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:103:103,0:103:3683:0:0:0,-31.0061,-330.817
chr07	2859488	.	C	G	35304.1	PASS	AB=0.516909;ABP=14.0992;AC=52;AF=0.276596;AN=188;AO=2319;CIGAR=1X;DP=7743;DPB=7743;DPRA=1.28156;EPP=5038.65;EPPR=11774.6;GTI=1;LEN=1;MEANALT=1.01667;MQM=40.2027;MQMR=53.9887;NS=94;NUMALT=1;ODDS=0.474529;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81886;QR=192798;RO=5421;RPL=0;RPP=5038.65;RPPR=11774.6;RPR=2319;RUN=1;SAF=0;SAP=5038.65;SAR=2319;SRF=0;SRP=11774.6;SRR=5421;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:31,20:31:1079:20:698:-42.8202,0,-81.7938	0/1:63:25,38:25:896:38:1328:-92.9726,0,-61.7847	0/1:250:104,146:104:3717:146:5169:-359.849,0,-257.869	0/1:177:105,72:105:3736:72:2544:-168.339,0,-282.592	0/0:89:89,0:89:3176:0:0:0,-26.7917,-285.279	0/0:60:59,1:59:2076:1:36:0,-14.8156,-183.411	0/0:55:55,0:55:1940:0:0:0,-16.5566,-174.347	0/1:105:43,62:43:1540:62:2213:-154.95,0,-106.492	0/0:108:108,0:108:3855:0:0:0,-32.5112,-345.608	0/1:50:25,25:25:882:25:860:-60.7717,0,-64.4511	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.9589	0/0:74:74,0:74:2615:0:0:0,-22.2762,-234.736	0/0:69:68,1:68:2436:1:36:0,-17.3835,-214.985	0/1:42:26,16:26:924:16:558:-36.0301,0,-70.6437	0/1:66:31,35:31:1098:35:1220:-86.7082,0,-79.0618	0/1:51:23,28:23:828:28:995:-70.0471,0,-59.3462	0/0:28:28,0:28:1004:0:0:0,-8.42884,-89.4063	0/1:35:20,15:20:712:15:540:-34.1932,0,-53.6806	0/1:26:16,10:16:564:10:348:-21.6926,0,-43.1046	0/1:101:42,59:42:1489:59:2104:-151.782,0,-103.478	0/0:118:118,0:118:4156:0:0:0,-35.5215,-372.475	0/1:118:36,82:36:1283:82:2893:-218.911,0,-80.1042	0/1:177:88,89:88:3113:89:3150:-221.763,0,-226.445	0/1:49:20,29:20:716:29:1032:-73.5663,0,-49.9262	0/1:65:41,24:41:1456:24:824:-51.4993,0,-110.968	0/0:292:292,0:292:10442:0:0:0,-87.9008,-938.692	0/0:283:282,1:282:10017:1:36:0,-81.737,-893.809	0/0:44:44,0:44:1554:0:0:0,-13.2453,-139.632	0/1:119:67,52:67:2396:52:1824:-125.41,0,-179.904	0/0:107:104,3:104:3687:3:86:0,-24.7321,-323.013	0/0:94:93,1:93:3320:1:27:0,-25.6381,-295.642	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1656	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9133	0/1:4:3,1:3:104:1:36:-2.18348,0,-8.10204	0/1:196:108,87:108:3840:87:3069:-209.743,0,-286.198	0/1:186:78,108:78:2760:108:3838:-274.432,0,-191.511	0/1:32:16,16:16:555:16:576:-38.8836,0,-40.5338	0/1:6:2,4:2:72:4:140:-10.681,0,-5.02085	0/1:141:80,61:80:2842:61:2145:-140.378,0,-213.037	0/1:19:11,8:11:381:8:284:-19.2077,0,-28.8592	0/1:164:77,87:77:2735:87:3035:-212.801,0,-196.451	0/1:50:23,27:23:816:27:953:-68.8237,0,-58.6523	0/1:57:31,26:31:1093:26:911:-63.1731,0,-81.315	0/0:102:101,0:101:3587:0:0:0,-30.404,-322.255	0/0:83:83,0:83:2958:0:0:0,-24.9855,-265.601	0/1:138:73,65:73:2599:65:2315:-161.223,0,-192.181	0/0:128:128,0:128:4568:0:0:0,-38.5318,-408.803	0/1:80:38,42:38:1350:42:1491:-106.006,0,-97.5453	0/1:96:49,47:49:1723:47:1671:-118.24,0,-125.802	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83179	0/1:132:60,72:60:2148:72:2534:-171.575,0,-152.924	0/0:51:51,0:51:1792:0:0:0,-15.3525,-161.405	0/1:7:5,2:5:171:2:72:-4.32923,0,-13.5782	0/1:156:70,86:70:2504:86:3028:-211.097,0,-178.29	0/1:53:23,30:23:816:30:1072:-77.176,0,-57.6297	0/1:10:8,2:8:288:2:72:-3.70833,0,-23.2498	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.1567	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.216	0/0:85:85,0:85:2997:0:0:0,-25.5875,-269.357	0/1:6:1,5:1:36:5:176:-13.4171,0,-1.77687	0/0:79:79,0:79:2814:0:0:0,-23.7814,-253.088	0/0:145:143,2:143:5108:2:72:0,-36.9942,-451.491	0/1:54:35,19:35:1252:19:684:-41.6725,0,-96.5559	0/0:96:96,0:96:3410:0:0:0,-28.8989,-306.269	0/1:163:74,89:74:2643:89:3151:-226.468,0,-188.806	0/1:155:51,104:51:1832:104:3656:-273.468,0,-118.149	0/1:19:7,12:7:252:12:428:-31.5845,0,-17.0195	0/0:54:53,1:53:1873:1:36:0,-12.868,-164.569	0/1:42:22,20:22:773:20:711:-50.3077,0,-57.165	0/1:14:10,4:10:356:4:129:-7.44492,0,-28.1446	0/0:71:71,0:71:2532:0:0:0,-21.3731,-227.317	0/1:54:31,23:31:1112:23:828:-54.0462,0,-83.5119	0/0:92:91,1:91:3205:1:36:0,-24.4486,-282.788	0/0:195:195,0:195:6984:0:0:0,-58.7008,-627.299	0/1:156:76,80:76:2715:80:2813:-191.761,0,-196.513	0/0:57:57,0:57:2028:0:0:0,-17.1587,-181.536	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.0618	0/0:107:107,0:107:3819:0:0:0,-32.2102,-342.616	0/1:101:55,46:55:1972:46:1626:-105.788,0,-146.738	0/1:218:96,122:96:3414:122:4334:-310.879,0,-240.557	0/1:50:28,22:28:1000:22:777:-52.7315,0,-75.033	0/1:72:36,36:36:1292:36:1272:-89.5704,0,-94.4726	0/0:38:38,0:38:1327:0:0:0,-11.4391,-119.377	0/1:138:70,68:70:2472:68:2384:-164.958,0,-180.769	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.5777	0/0:61:61,0:61:2160:0:0:0,-18.3628,-193.477	0/0:61:61,0:61:2158:0:0:0,-18.3628,-193.789	0/1:26:12,14:12:432:14:504:-36.0453,0,-31.0236	0/1:65:35,30:35:1252:30:1056:-71.1441,0,-93.006	0/1:60:19,41:19:676:41:1450:-108.361,0,-42.9793	0/0:103:102,0:102:3631:0:0:0,-30.7051,-325.999	0/0:98:98,0:98:3462:0:0:0,-29.5009,-311.06
chr07	2870296	.	A	G	26134	PASS	AB=0.503542;ABP=3.34867;AC=51;AF=0.274194;AN=186;AO=1573;CIGAR=1X;DP=5383;DPB=5383;DPRA=1.27903;EPP=3418.74;EPPR=8215.6;GTI=0;LEN=1;MEANALT=1.05085;MQM=59.9212;MQMR=59.9711;NS=93;NUMALT=1;ODDS=1.84731;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56116;QR=134305;RO=3806;RPL=0;RPP=3418.74;RPPR=8215.6;RPR=1573;RUN=1;SAF=1573;SAP=3418.74;SAR=0;SRF=3806;SRP=8267.63;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:15,8:15:536:8:280:-18.6156,0,-41.6511	0/1:36:15,21:15:491:21:747:-56.7179,0,-33.6623	0/1:125:53,72:53:1878:72:2565:-193.47,0,-131.666	0/1:165:70,95:70:2451:95:3393:-255.913,0,-171.171	0/0:29:29,0:29:1021:0:0:0,-8.72987,-92.2003	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/1:69:27,42:27:957:42:1497:-114.251,0,-65.6724	0/0:70:70,0:70:2482:0:0:0,-21.0721,-223.631	0/1:26:15,11:15:525:11:392:-27.7933,0,-39.7513	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.268	0/0:84:84,0:84:2990:0:0:0,-25.2865,-269.329	0/0:66:66,0:66:2338:0:0:0,-19.868,-210.632	0/1:49:21,28:21:756:28:993:-74.932,0,-53.6168	0/1:72:31,41:31:1112:41:1474:-111.282,0,-78.7172	0/1:58:27,31:27:949:31:1108:-82.5713,0,-68.263	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/1:40:24,16:24:856:16:568:-39.4107,0,-65.3199	0/1:87:56,31:56:1952:31:1112:-74.2017,0,-149.759	0/0:70:69,1:69:2476:1:36:0,-17.4738,-219.495	0/1:79:37,42:37:1328:42:1482:-109.888,0,-96.0409	0/1:40:17,23:17:608:23:828:-62.746,0,-43.0108	0/1:38:31,7:31:1104:7:252:-11.5898,0,-88.2315	0/1:35:13,22:13:453:22:773:-59.3534,0,-30.5636	0/0:103:101,2:101:3594:2:72:0,-24.1694,-316.828	0/0:171:171,0:171:6003:0:0:0,-51.4761,-540.377	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.6994	0/1:177:85,92:85:2991:92:3308:-244.655,0,-216.138	0/0:53:52,1:52:1785:1:36:0,-12.3563,-157.324	0/0:53:53,0:53:1859:0:0:0,-15.9546,-167.584	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2943	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:24:8,16:8:269:16:573:-44.6792,0,-17.3114	0/1:177:98,79:98:3482:79:2825:-201.2,0,-260.304	0/1:59:35,24:35:1229:24:864:-60.3218,0,-93.1511	0/1:39:20,18:20:720:18:648:-46.8529,0,-53.3298	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:51:33,18:33:1176:18:648:-43.2994,0,-90.7952	0/1:40:23,17:23:824:17:612:-43.3722,0,-62.4421	0/1:85:50,35:50:1751:35:1244:-86.6771,0,-132.28	0/1:51:25,26:25:881:26:936:-69.2069,0,-64.2533	0/1:51:23,27:23:820:27:960:-71.3436,0,-58.7496	0/0:53:53,0:53:1855:0:0:0,-15.9546,-167.224	0/0:42:42,0:42:1474:0:0:0,-12.6433,-132.95	0/1:123:50,73:50:1728:73:2605:-197.67,0,-118.764	0/0:52:52,0:52:1819:0:0:0,-15.6536,-163.985	0/1:70:29,41:29:1025:41:1476:-112.064,0,-71.4886	0/1:59:28,31:28:974:31:1101:-81.6376,0,-70.2074	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:62:36,26:36:1277:26:923:-64.7221,0,-96.5672	0/0:30:30,0:30:1031:0:0:0,-9.0309,-93.0924	0/1:8:4,4:4:125:4:144:-10.9054,0,-9.15038	0/1:69:45,24:45:1589:24:860:-56.9403,0,-122.527	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:17:17,0:17:574:0:0:0,-5.11751,-51.976	0/0:47:47,0:47:1654:0:0:0,-14.1484,-149.144	0/0:95:94,0:94:3365:0:0:0,-28.2968,-302.704	.:.:.:.:.:.:.:.	0/0:117:117,0:117:4095:0:0:0,-35.2205,-368.728	0/0:101:100,1:100:3483:1:36:0,-26.8058,-310.078	0/1:30:16,14:16:576:14:485:-34.9461,0,-43.1441	0/0:85:85,0:85:2984:0:0:0,-25.5875,-268.789	0/1:70:35,35:35:1222:35:1236:-90.4694,0,-89.1923	0/1:35:15,20:15:536:20:720:-54.5927,0,-38.0388	0/1:56:24,32:24:848:32:1138:-85.8687,0,-59.782	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	0/0:72:71,1:71:2529:1:36:0,-18.0759,-224.262	0/1:33:15,18:15:525:18:644:-48.3566,0,-37.6441	0/0:64:62,1:62:2175:1:36:0,-15.7264,-192.414	0/0:62:62,0:62:2194:0:0:0,-18.6639,-197.722	0/1:85:39,46:39:1302:46:1637:-122.001,0,-91.8703	0/0:50:50,0:50:1724:0:0:0,-15.0515,-155.437	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:75:38,37:38:1334:37:1328:-97.245,0,-97.7786	0/1:81:43,38:43:1510:38:1319:-94.6175,0,-111.806	0/1:45:21,24:21:756:24:856:-63.8148,0,-54.8209	0/1:73:34,39:34:1209:39:1404:-104.656,0,-87.1389	0/0:47:47,0:47:1677:0:0:0,-14.1484,-151.215	0/1:120:66,54:66:2334:54:1924:-137.313,0,-174.193	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:71:70,1:70:2459:1:36:0,-17.7749,-217.962	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.487	0/1:44:18,26:18:648:26:924:-70.2323,0,-45.4066	0/1:100:54,46:54:1936:46:1648:-118.506,0,-144.412	0/1:84:35,49:35:1233:49:1722:-129.974,0,-85.9856	0/0:71:70,1:70:2441:1:36:0,-17.7749,-216.338	0/0:97:97,0:97:3453:0:0:0,-29.1999,-310.982
chr07	2870520	.	GATCAAC	AATTGAT,GATCGAC	115018	PASS	AB=0.472162,0.520684;ABP=24.6514,14.9578;AC=137,51;AF=0.728723,0.271277;AN=188;AO=3836,1683;CIGAR=1X2M2X1M1X,4M1X2M;DP=5549;DPB=5548.71;DPRA=40.1884,1.26567;EPP=8324.09,3622.94;EPPR=5.18177;GTI=0;LEN=7,1;MEANALT=1.8587,2.39623;MQM=53.6243,59.9768;MQMR=58;NS=94;NUMALT=2;ODDS=0.312363;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=135024,60047;QR=35;RO=1;RPL=1,4;RPP=8324.09,3622.94;RPPR=5.18177;RPR=3835,1679;RUN=1,1;SAF=3836,1683;SAP=8332.78,3657.6;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:50:0,32,18:0:0:32,18:1107,636:-141.717,-52.1495,-42.5165,-89.9178,0,-84.4993	1/2:35:0,14,21:0:0:14,21:497,748:-101.557,-61.3237,-57.1092,-40.5878,0,-34.2661	1/2:76:0,35,40:0:0:35,40:1237,1429:-217.047,-116.562,-106.026,-100.535,0,-88.4942	1/2:160:0,74,84:0:0:74,84:2615,2999:-456.863,-244.49,-222.214,-212.407,0,-187.12	1/1:35:0,35,0:0:0:35,0:1221,0:-109.865,-10.5361,0,-109.865,-10.5361,-109.865	1/1:19:0,19,0:0:0:19,0:669,0:-60.2913,-5.71957,0,-60.2913,-5.71957,-60.2913	1/1:58:0,57,0:0:0:57,0:1976,0:-177.085,-17.1587,0,-177.085,-17.1587,-177.085	1/2:69:0,19,49:0:0:19,49:655,1733:-194.277,-141.27,-135.551,-53.1165,0,-38.366	1/1:72:0,72,0:0:0:72,0:2493,0:-223.861,-21.6742,0,-223.861,-21.6742,-223.861	1/2:52:0,30,22:0:0:30,22:1038,788:-148.796,-64.5937,-55.5628,-84.5546,0,-77.932	1/1:16:0,16,0:0:0:16,0:566,0:-51.1402,-4.81648,0,-51.1402,-4.81648,-51.1402	1/1:83:0,83,0:0:0:83,0:2928,0:-262.308,-24.9855,0,-262.308,-24.9855,-262.308	1/1:66:0,66,0:0:0:66,0:2356,0:-209.437,-19.868,0,-209.437,-19.868,-209.437	1/2:31:0,12,19:0:0:12,19:426,671:-89.6566,-54.9962,-51.3839,-35.0142,0,-29.2947	1/2:58:0,28,30:0:0:28,30:979,1072:-167.213,-87.7616,-79.3327,-79.8042,0,-70.7733	1/2:56:0,24,31:0:0:24,31:845,1100:-158.163,-89.7174,-82.4927,-68.5347,0,-59.2028	1/1:25:0,25,0:0:0:25,0:891,0:-80.1572,-7.52575,0,-80.1572,-7.52575,-80.1572	1/2:33:0,15,18:0:0:15,18:525,640:-94.6003,-52.5108,-47.9953,-42.4394,0,-37.0209	1/2:21:0,8,13:0:0:8,13:285,468:-61.5508,-38.5463,-36.138,-23.3601,0,-19.4467	1/2:109:0,42,67:0:0:42,67:1485,2396:-316.484,-195.728,-183.085,-121.11,0,-100.941	1/1:109:0,109,0:0:0:109,0:3842,0:-344.307,-32.8123,0,-344.307,-32.8123,-344.307	1/2:104:0,42,62:0:0:42,62:1496,2211:-302.469,-180.59,-167.947,-122.235,0,-103.571	1/2:114:0,43,71:0:0:43,71:1532,2531:-331.275,-206.668,-193.724,-124.963,0,-103.59	1/2:43:0,15,27:0:0:15,27:526,968:-121.713,-79.075,-74.5595,-42.7519,0,-34.6241	1/2:60:0,48,12:0:0:48,12:1697,432:-173.156,-35.6088,-21.1594,-137.905,0,-134.293	1/1:177:0,175,0:0:0:175,0:6197,0:-556.54,-52.6803,0,-556.54,-52.6803,-556.54	1/1:113:0,113,0:0:0:113,0:3976,0:-357.287,-34.0164,0,-357.287,-34.0164,-357.287	1/1:26:0,26,0:0:0:26,0:923,0:-83.2147,-7.82678,0,-83.2147,-7.82678,-83.2147	1/2:151:0,91,58:0:0:91,58:3226,2072:-431.462,-168.984,-141.591,-262.527,0,-245.067	1/1:46:0,46,0:0:0:46,0:1620,0:-144.59,-13.8474,0,-144.59,-13.8474,-144.59	1/1:53:0,53,0:0:0:53,0:1830,0:-164.672,-15.9546,0,-164.672,-15.9546,-164.672	1/2:6:0,5,1:0:0:5,1:180,32:-17.5916,-2.89828,-1.39313,-15.0198,0,-14.7188	1/1:11:0,11,0:0:0:11,0:380,0:-34.3174,-3.31133,0,-34.3174,-3.31133,-34.3174	1/1:4:0,4,0:0:0:4,0:140,0:-11.8741,-1.20412,0,-11.8741,-1.20412,-11.8741	1/1:5:0,5,0:0:0:5,0:176,0:-15.6565,-1.50515,0,-15.6565,-1.50515,-15.6565	1/1:6:0,6,0:0:0:6,0:209,0:-19.0618,-1.80618,0,-19.0618,-1.80618,-19.0618	1/2:163:0,86,76:0:0:86,76:3018,2719:-467.106,-221.744,-195.856,-245.386,0,-222.508	1/2:71:0,32,38:0:0:32,38:1125,1360:-201.236,-110.979,-101.347,-90.3249,0,-78.8857	1/2:32:0,12,20:0:0:12,20:431,712:-92.9039,-58.3861,-54.7737,-34.872,0,-28.8514	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:93:0,47,45:0:0:47,45:1659,1608:-265.74,-131.104,-116.956,-134.631,0,-121.084	1/2:22:0,9,13:0:0:9,13:319,455:-63.3177,-37.3686,-34.6593,-26.3013,0,-22.3879	1/2:73:0,32,41:0:0:32,41:1121,1458:-210.12,-119.174,-109.541,-91.2986,0,-78.9564	1/2:36:0,23,13:0:0:23,13:822,464:-104.987,-38.1841,-31.2604,-67.1596,0,-63.2462	1/2:52:0,25,26:0:0:25,26:882,932:-147.546,-76.0219,-68.4962,-71.5285,0,-63.7018	1/1:84:0,84,0:0:0:84,0:2967,0:-266.928,-25.2865,0,-266.928,-25.2865,-266.928	1/1:97:0,97,0:0:0:97,0:3376,0:-302.719,-29.1999,0,-302.719,-29.1999,-302.719	1/2:88:0,25,63:0:0:25,63:888,2234:-254.588,-182.358,-174.832,-72.5846,0,-53.6197	1/1:42:0,40,2:0:0:40,2:1384,72:-124.123,-12.0412,0,-118.247,-5.80654,-117.645	1/2:39:0,13,26:0:0:13,26:465,928:-113.896,-76.0115,-72.0981,-38.2416,0,-30.4149	1/2:74:0,48,26:0:0:48,26:1670,923:-211.058,-75.56,-61.1105,-135.85,0,-128.023	1/1:3:0,3,0:0:0:3,0:105,0:-9.78991,-0.90309,0,-9.78991,-0.90309,-9.78991	1/2:129:0,63,64:0:0:63,64:2226,2292:-366.881,-186.971,-168.006,-179.959,0,-160.694	1/1:17:0,17,0:0:0:17,0:595,0:-52.9511,-5.11751,0,-52.9511,-5.11751,-52.9511	1/1:2:0,2,0:0:0:2,0:72,0:-6.81953,-0.60206,0,-6.81953,-0.60206,-6.81953	1/2:79:0,43,34:0:0:43,34:1517,1212:-221.865,-98.8199,-85.8757,-123.068,0,-112.833	1/2:32:0,22,10:0:0:22,10:780,356:-92.8667,-29.3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chr07	2870531	.	C	T	28843.4	PASS	AB=0.522351;ABP=16.891;AC=52;AF=0.276596;AN=188;AO=1680;CIGAR=1X;DP=5496;DPB=5496;DPRA=1.31954;EPP=3564.74;EPPR=8200.55;GTI=1;LEN=1;MEANALT=1;MQM=59.9732;MQMR=53.6115;NS=94;NUMALT=1;ODDS=0.236189;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60027;QR=136304;RO=3815;RPL=1670;RPP=3564.74;RPPR=8200.55;RPR=10;RUN=1;SAF=1680;SAP=3651.08;SAR=0;SRF=3815;SRP=8287.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:32,18:32:1152:18:644:-43.2391,0,-88.4581	0/1:34:14,20:14:504:20:708:-53.8106,0,-35.1597	0/1:77:36,41:36:1292:41:1470:-109.417,0,-92.9277	0/1:155:76,79:76:2697:79:2816:-206.999,0,-195.651	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.364	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.1959	0/0:57:57,0:57:2027:0:0:0,-17.1587,-181.492	0/1:70:19,51:19:671:51:1827:-143.639,0,-39.2346	0/0:71:70,0:70:2507:0:0:0,-21.0721,-224.749	0/1:53:29,24:29:1035:24:853:-61.1325,0,-77.3127	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.0404	0/0:82:82,0:82:2896:0:0:0,-24.6845,-259.179	0/0:66:66,0:66:2359:0:0:0,-19.868,-209.615	0/1:31:12,19:12:428:19:680:-52.1972,0,-29.474	0/1:57:28,29:28:1004:29:1044:-77.1161,0,-73.2162	0/1:56:25,31:25:900:31:1104:-82.813,0,-64.0735	0/0:25:25,0:25:900:0:0:0,-7.52575,-80.9248	0/1:32:15,17:15:536:17:593:-44.0618,0,-37.8616	0/1:22:9,13:9:324:13:458:-34.9314,0,-22.5124	0/1:108:42,66:42:1508:66:2364:-180.507,0,-103.301	0/0:107:106,1:106:3768:1:36:0,-28.617,-334.105	0/1:100:41,59:41:1468:59:2120:-160.965,0,-102.255	0/1:112:43,69:43:1544:69:2472:-189.018,0,-105.249	0/1:44:17,27:17:608:27:960:-73.471,0,-41.4344	0/1:60:48,12:48:1716:12:419:-19.9815,0,-136.008	0/0:176:176,0:176:6291:0:0:0,-52.9813,-564.61	0/0:111:111,0:111:3984:0:0:0,-33.4143,-357.952	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.5946	0/1:155:91,64:91:3268:64:2273:-158.171,0,-247.299	0/0:46:46,0:46:1643:0:0:0,-13.8474,-146.085	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.2	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7188	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.292	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.9795	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.0185	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5559	0/1:162:86,76:86:3055:76:2724:-196.636,0,-226.177	0/1:70:33,37:33:1175:37:1324:-98.39,0,-82.3019	0/1:32:12,20:12:432:20:711:-54.6827,0,-28.9402	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:93:48,45:48:1720:45:1595:-115.844,0,-126.536	0/1:21:9,12:9:324:12:428:-32.5372,0,-23.1388	0/1:73:32,41:32:1148:41:1454:-109.181,0,-81.3655	0/1:36:23,13:23:820:13:464:-31.2604,0,-63.1143	0/1:49:25,24:25:892:24:860:-62.9714,0,-65.5918	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.418	0/0:98:98,0:98:3502:0:0:0,-29.5009,-313.503	0/1:87:25,62:25:900:62:2224:-174.235,0,-54.9829	0/0:42:40,2:40:1436:2:72:0,-5.80654,-122.22	0/1:39:13,26:13:464:26:932:-72.4587,0,-30.3249	0/1:71:46,25:46:1648:25:900:-59.9479,0,-126.923	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0679	0/1:132:63,69:63:2260:69:2461:-182.007,0,-162.442	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.6021	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	0/1:76:41,35:41:1467:35:1234:-88.4836,0,-108.812	0/1:33:22,11:22:784:11:396:-26.0488,0,-60.8966	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4912	0/0:51:51,0:51:1815:0:0:0,-15.3525,-162.324	0/0:98:98,0:98:3511:0:0:0,-29.5009,-314.834	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83179	0/0:115:115,0:115:4111:0:0:0,-34.6184,-369.63	0/0:91:89,2:89:3182:2:57:0,-21.9804,-280.207	0/1:47:28,19:28:1004:19:684:-47.7419,0,-76.1983	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.456	0/1:94:31,63:31:1116:63:2260:-175.366,0,-71.4879	0/1:103:30,73:30:1076:73:2617:-204.77,0,-65.9793	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.359	0/0:39:39,0:39:1381:0:0:0,-11.7402,-123.74	0/1:32:14,18:14:504:18:648:-49.0189,0,-34.8758	0/1:10:6,4:6:207:4:144:-10.3033,0,-15.9444	0/0:121:121,0:121:4315:0:0:0,-36.4246,-386.843	0/1:37:17,20:17:608:20:701:-52.2736,0,-43.5857	0/0:59:59,0:59:2116:0:0:0,-17.7608,-189.932	0/0:114:114,0:114:4051:0:0:0,-34.3174,-363.553	0/1:59:27,32:27:959:32:1148:-85.8691,0,-68.4625	0/0:30:30,0:30:1076:0:0:0,-9.0309,-96.5483	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.1957	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.173	0/1:50:18,32:18:648:32:1148:-88.5783,0,-43.2703	0/1:202:131,71:131:4688:71:2554:-169.302,0,-359.648	0/1:71:25,46:25:900:46:1630:-125.614,0,-59.7331	0/1:48:15,33:15:540:33:1184:-92.4189,0,-34.1115	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.133	0/1:102:57,45:57:2024:45:1620:-115.385,0,-151.328	0/0:35:35,0:35:1247:0:0:0,-10.536,-111.322	0/0:66:66,0:66:2320:0:0:0,-19.868,-208.171	0/0:62:62,0:62:2228:0:0:0,-18.6639,-198.634	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4137	0/1:55:28,27:28:980:27:964:-70.5202,0,-71.8281	0/1:66:23,43:23:828:43:1548:-119.745,0,-54.8958	0/0:43:43,0:43:1535:0:0:0,-12.9443,-137.646	0/0:78:77,1:77:2728:1:36:0,-19.8821,-240.525
chr07	2870538	.	C	A	77804.5	PASS	AB=0.472385;ABP=24.4778;AC=136;AF=0.723404;AN=188;AO=3830;CIGAR=1X;DP=5551;DPB=5551;DPRA=40.2029;EPP=8302.39;EPPR=3729.26;GTI=0;LEN=1;MEANALT=1.01087;MQM=53.5762;MQMR=59.9727;NS=94;NUMALT=1;ODDS=0.269053;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137189;QR=61202;RO=1720;RPL=3828;RPP=8302.39;RPPR=3729.26;RPR=2;RUN=1;SAF=3830;SAP=8319.75;SAR=0;SRF=1720;SRP=3737.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:19,31:19:667:31:1108:-84.5224,0,-45.3031	0/1:35:21,14:21:743:14:504:-34.8586,0,-56.6573	0/1:78:42,36:42:1504:36:1292:-92.6267,0,-112.174	0/1:160:85,75:85:3012:75:2688:-193.226,0,-223.051	1/1:34:0,34:0:0:34:1224:-110.17,-10.235,0	1/1:19:0,19:0:0:19:665:-60.0226,-5.71957,0	1/1:56:0,56:0:0:56:2000:-178.97,-16.8577,0	0/1:71:52,19:52:1851:19:680:-39.6844,0,-145.496	1/1:72:0,72:0:0:72:2557:-229.367,-21.6742,0	0/1:54:24,30:24:856:30:1080:-81.0575,0,-61.0939	1/1:16:0,16:0:0:16:576:-52.0404,-4.81648,0	1/1:82:0,82:0:0:82:2947:-263.632,-24.6845,0	1/1:66:0,66:0:0:66:2364:-209.965,-19.868,0	0/1:31:19,12:19:675:12:432:-29.8337,0,-51.745	0/1:56:29,27:29:1027:27:957:-69.3136,0,-75.8845	0/1:57:31,26:31:1107:26:928:-66.2218,0,-82.7814	1/1:25:0,25:0:0:25:900:-80.9248,-7.52575,0	0/1:32:18,14:18:635:14:500:-34.6306,0,-47.844	0/1:22:13,9:13:459:9:324:-22.5124,0,-35.0214	0/1:109:67,42:67:2390:42:1497:-102.078,0,-182.544	1/1:108:1,107:1:36:107:3837:-339.976,-28.9181,0	0/1:101:59,42:59:2116:42:1508:-105.551,0,-160.305	0/1:113:71,42:71:2511:42:1512:-102.07,0,-192.224	0/1:45:28,17:28:1000:17:612:-41.492,0,-76.769	0/1:60:12,48:12:424:48:1711:-135.598,0,-20.4346	1/1:175:0,175:0:0:175:6258:-562.083,-52.6803,0	1/1:112:0,112:0:0:112:4013:-360.667,-33.7154,0	1/1:26:0,26:0:0:26:932:-84.0163,-7.82678,0	0/1:156:64,92:64:2264:92:3304:-250.237,0,-157.06	1/1:45:0,45:0:0:45:1616:-143.66,-13.5464,0	1/1:53:0,53:0:0:53:1904:-171.201,-15.9546,0	0/1:6:1,5:1:36:5:180:-14.7188,0,-1.79209	1/1:11:0,11:0:0:11:396:-35.6464,-3.31133,0	1/1:4:0,4:0:0:4:128:-11.6152,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.0185,-1.50515,0	1/1:6:0,6:0:0:6:212:-19.2948,-1.80618,0	0/1:163:77,86:77:2748:86:3084:-228.296,0,-198.492	0/1:72:39,33:39:1395:33:1184:-82.2535,0,-104.174	0/1:32:20,12:20:720:12:432:-28.9402,0,-55.4958	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:95:47,48:47:1665:48:1713:-125.301,0,-121.538	0/1:22:13,9:13:438:9:324:-22.8378,0,-33.1169	0/1:73:41,32:41:1464:32:1148:-81.3655,0,-110.081	0/1:35:12,23:12:428:23:828:-64.0859,0,-28.3228	0/1:52:26,26:26:917:26:936:-68.5868,0,-67.191	1/1:84:0,84:0:0:84:3001:-269.976,-25.2865,0	1/1:97:0,97:0:0:97:3480:-311.436,-29.1999,0	0/1:87:62,25:62:2213:25:896:-54.6271,0,-173.243	1/1:42:2,40:2:72:40:1432:-121.93,-5.80654,0	0/1:40:26,14:26:917:14:492:-32.1036,0,-70.8034	0/1:71:24,47:24:864:47:1692:-130.69,0,-56.7094	1/1:3:0,3:0:0:3:108:-10.0679,-0.90309,0	0/1:129:67,62:67:2408:62:2228:-160.951,0,-178.143	1/1:17:0,17:0:0:17:612:-54.0599,-5.11751,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:81:38,43:38:1364:43:1529:-112.882,0,-98.6773	0/1:33:11,22:11:392:22:792:-61.6155,0,-25.6861	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:5:0,5:0:0:5:180:-16.4912,-1.50515,0	1/1:50:0,50:0:0:50:1766:-158.52,-15.0515,0	1/1:99:0,98:0:0:98:3519:-315.157,-29.5009,0	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:116:0,116:0:0:116:4171:-375.038,-34.9195,0	1/1:93:2,91:2:57:91:3272:-288.283,-22.5825,0	0/1:47:20,27:20:720:27:972:-73.3774,0,-50.9804	1/1:41:0,41:0:0:41:1467:-132.231,-12.3422,0	0/1:96:65,31:65:2315:31:1108:-70.1693,0,-179.711	0/1:105:75,30:75:2671:30:1076:-65.3759,0,-209.027	0/1:11:1,10:1:36:10:356:-29.0129,0,-0.286945	1/1:39:0,39:0:0:39:1404:-125.522,-11.7402,0	0/1:34:20,14:20:711:14:504:-34.2737,0,-54.0806	0/1:10:4,6:4:144:6:216:-16.7659,0,-10.3033	1/1:124:0,124:0:0:124:4448:-397.647,-37.3277,0	0/1:37:19,18:19:657:18:648:-47.1725,0,-48.3123	1/1:59:0,59:0:0:59:2104:-188.608,-17.7608,0	1/1:118:0,118:0:0:118:4225:-379.347,-35.5215,0	0/1:60:32,28:32:1144:28:1008:-72.5523,0,-85.2077	1/1:29:0,29:0:0:29:1029:-92.4969,-8.72987,0	1/1:8:0,8:0:0:8:288:-26.1957,-2.40824,0	1/1:32:0,32:0:0:32:1148:-102.981,-9.63296,0	0/1:51:33,18:33:1171:18:644:-42.6129,0,-90.3441	0/1:196:71,125:71:2529:125:4484:-343.319,0,-168.858	0/1:74:49,25:49:1751:25:896:-58.4722,0,-135.597	0/1:49:35,14:35:1256:14:504:-30.6585,0,-98.5948	1/1:46:0,46:0:0:46:1649:-148.162,-13.8474,0	0/1:108:48,60:48:1711:60:2128:-158.235,0,-121.764	1/1:35:0,35:0:0:35:1260:-112.476,-10.5361,0	1/1:67:0,67:0:0:67:2391:-214.32,-20.169,0	1/1:62:1,61:1:36:61:2188:-191.444,-15.0666,0	0/1:16:8,8:8:279:8:288:-21.4137,0,-20.6311	0/1:57:27,30:27:955:30:1076:-79.2082,0,-69.1061	0/1:69:45,24:45:1597:24:845:-54.8255,0,-123.247	1/1:42:0,42:0:0:42:1508:-134.997,-12.6433,0	1/1:80:1,79:1:36:79:2838:-250.267,-20.4841,0
chr07	3010370	.	T	C	99256.5	PASS	AB=0.828076;ABP=595.733;AC=166;AF=0.882979;AN=188;AO=4460;CIGAR=1X;DP=4653;DPB=4653;DPRA=0;EPP=9687.78;EPPR=415.59;GTI=16;LEN=1;MEANALT=1.03191;MQM=59.9957;MQMR=59.7105;NS=94;NUMALT=1;ODDS=40.7679;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159665;QR=6807;RO=190;RPL=0;RPP=9687.78;RPPR=415.59;RPR=4460;RUN=1;SAF=4460;SAP=9687.78;SAR=0;SRF=190;SRP=415.59;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:178:2,176:2:68:176:6289:-559.645,-47.1256,0	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	1/1:20:1,19:1:36:19:680:-57.9309,-2.42233,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:82:3,78:3:108:78:2800:-242.164,-14.6681,0	1/1:82:0,82:0:0:82:2921:-263.124,-24.6845,0	1/1:59:2,57:2:72:57:2052:-178.115,-10.924,0	1/1:47:4,43:4:144:43:1528:-124.499,-0.834793,0	1/1:81:4,77:4:144:77:2768:-236.047,-11.0698,0	0/1:30:5,25:5:171:25:896:-71.9295,0,-6.69455	1/1:29:2,27:2:72:27:972:-80.9612,-1.89315,0	0/1:55:7,48:7:248:48:1724:-138.889,0,-6.10754	1/1:43:3,40:3:108:40:1428:-118.742,-2.86912,0	0/1:28:4,24:4:144:24:864:-69.6537,0,-4.88478	0/1:20:3,17:3:108:17:608:-49.0314,0,-4.05457	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:88:2,86:2:72:86:3072:-269.872,-19.6539,0	1/1:122:0,122:0:0:122:4364:-392.935,-36.7257,0	1/1:109:4,105:4:144:105:3764:-325.645,-19.4987,0	1/1:96:0,96:0:0:96:3425:-308.463,-28.8989,0	1/1:23:2,21:2:72:21:741:-60.1749,-0.0869676,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:110:1,109:1:36:109:3908:-348.315,-29.515,0	1/1:147:4,143:4:144:143:5128:-448.362,-30.9519,0	0/1:18:2,16:2:68:16:568:-46.0333,0,-1.03917	1/1:167:2,165:2:72:165:5894:-523.73,-43.4353,0	1/1:116:0,116:0:0:116:4160:-374.582,-34.9195,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:138:8,130:8:288:130:4656:-392.931,-15.2747,0	1/1:82:1,81:1:36:81:2888:-256.559,-21.0862,0	0/1:18:4,14:4:144:14:495:-39.4645,0,-7.86597	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:98:1,96:1:36:96:3440:-306.215,-25.9615,0	1/1:38:2,36:2:72:36:1288:-109.387,-4.60242,0	1/1:41:2,39:2:72:39:1400:-119.462,-5.50551,0	1/1:38:1,37:1:32:37:1332:-116.983,-8.23983,0	1/1:77:0,77:0:0:77:2744:-247.203,-23.1793,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:26:2,24:2:72:24:864:-71.2458,-0.990058,0	1/1:35:3,32:3:108:32:1152:-93.9234,-0.469324,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	1/1:26:1,25:1:32:25:888:-77.0397,-4.62747,0	1/1:42:0,41:0:0:41:1476:-132.776,-12.3422,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	0/1:73:11,62:11:396:62:2228:-178.809,0,-13.9993	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:123:3,120:3:108:120:4292:-376.383,-26.9515,0	1/1:90:0,90:0:0:90:3236:-291.461,-27.0927,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:97:1,96:1:36:96:3428:-305.136,-25.6016,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:13:1,12:1:36:12:428:-35.2605,-0.315115,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:78:1,77:1:36:77:2752:-244.324,-19.8821,0	1/1:61:0,61:0:0:61:2176:-196.107,-18.3628,0	1/1:101:5,96:5:180:96:3436:-292.901,-13.852,0	1/1:92:3,89:3:108:89:3165:-274.999,-17.6196,0	1/1:32:2,30:2:72:30:1076:-90.3161,-2.79624,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:56:0,56:0:0:56:1997:-180.002,-16.8577,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:143:2,141:2:72:141:5052:-447.988,-36.2106,0	0/1:72:9,63:9:324:63:2255:-181.538,0,-7.81782	0/1:29:5,24:5:180:24:864:-69.3527,0,-7.82219	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/1:42:7,35:7:248:35:1256:-100.702,0,-10.0209	0/1:21:4,17:4:144:17:608:-48.7304,0,-6.99199	0/1:58:7,51:7:252:51:1819:-146.531,0,-5.56922	0/1:53:7,46:7:252:46:1648:-132.654,0,-7.07437	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.78699	0/1:27:4,23:4:144:23:820:-65.9947,0,-5.18581	0/1:18:3,15:3:108:15:540:-43.518,0,-4.65663	1/1:29:1,28:1:36:28:1004:-87.0776,-5.1316,0	1/1:68:4,64:4:144:64:2288:-192.868,-7.15642,0
chr07	3373390	.	C	T	136189	PASS	AB=0.498145;ABP=3.14723;AC=136;AF=0.723404;AN=188;AO=6500;CIGAR=1X;DP=8806;DPB=8806;DPRA=0;EPP=14117.6;EPPR=5006.08;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.8486;MQMR=59.9905;NS=94;NUMALT=1;ODDS=0.742534;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232697;QR=82038;RO=2304;RPL=0;RPP=14117.6;RPPR=4988.73;RPR=6500;RUN=1;SAF=0;SAP=14117.6;SAR=6500;SRF=2;SRP=4988.73;SRR=2302;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:28,12:28:1004:12:432:-27.18,0,-78.6347	1/1:99:0,99:0:0:99:3556:-320.244,-29.802,0	1/1:123:0,123:0:0:123:4416:-397.611,-37.0267,0	0/1:161:78,83:78:2784:83:2978:-219.74,0,-202.335	0/1:83:43,40:43:1536:40:1432:-104.184,0,-113.548	0/1:61:27,34:27:972:34:1220:-91.7358,0,-69.4351	0/1:144:61,83:61:2179:83:2969:-224.013,0,-153.027	1/1:125:1,124:1:36:124:4442:-396.351,-34.0305,0	0/1:106:79,27:79:2801:27:968:-55.5282,0,-220.392	0/1:83:61,22:61:2148:22:788:-46.2593,0,-168.6	1/1:37:0,37:0:0:37:1304:-117.659,-11.1381,0	0/1:57:23,34:23:824:34:1224:-93.3075,0,-57.3246	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:53:0,53:0:0:53:1898:-170.539,-15.9546,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	0/1:41:17,24:17:604:24:864:-65.7324,0,-42.3484	1/1:49:0,49:0:0:49:1749:-157.686,-14.7505,0	1/1:40:0,40:0:0:40:1427:-128.723,-12.0412,0	0/1:36:14,22:14:495:22:792:-60.7686,0,-34.0459	0/1:268:119,149:119:4220:149:5355:-400.338,0,-299.306	0/1:141:72,69:72:2560:69:2472:-180.288,0,-188.206	1/1:183:0,183:0:0:183:6526:-587.422,-55.0885,0	0/1:111:48,63:48:1716:63:2268:-170.963,0,-121.311	0/1:107:10,97:10:360:97:3469:-280.208,0,-0.534092	0/1:97:43,54:43:1536:54:1936:-145.259,0,-109.333	1/1:303:0,303:0:0:303:10814:-973.114,-91.2121,0	0/1:204:88,116:88:3134:116:4157:-312.894,0,-220.876	0/1:28:14,14:14:504:14:504:-37.2683,0,-37.2693	1/1:333:2,331:2:72:331:11840:-1058.61,-93.4063,0	0/1:108:48,60:48:1701:60:2152:-161.435,0,-120.863	1/1:142:1,141:1:36:141:5035:-449.623,-39.148,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:134:0,134:0:0:134:4799:-432.065,-40.338,0	0/1:194:101,93:101:3607:93:3336:-242.052,0,-266.436	0/1:37:19,18:19:672:18:644:-47.1525,0,-49.6687	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:152:0,152:0:0:152:5451:-490.653,-45.7566,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:161:73,87:73:2587:87:3108:-231.418,0,-184.555	0/1:54:29,25:29:1031:25:900:-65.0638,0,-76.8388	1/1:50:0,50:0:0:50:1800:-162.281,-15.0515,0	0/1:115:70,45:70:2471:45:1616:-111.112,0,-188.026	1/1:163:0,163:0:0:163:5840:-525.708,-49.0679,0	1/1:216:0,216:0:0:216:7667:-689.919,-65.0225,0	0/1:115:57,58:57:2039:58:2084:-153.212,0,-149.163	0/1:98:42,56:42:1504:56:1991:-149.951,0,-106.154	0/1:177:133,44:133:4748:44:1569:-87.5161,0,-374.197	0/1:13:8,5:8:288:5:180:-12.6371,0,-22.354	0/1:166:74,92:74:2652:92:3300:-247.244,0,-188.955	0/1:42:23,18:23:828:18:648:-45.9285,0,-62.1421	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:175:0,175:0:0:175:6271:-564.414,-52.6803,0	0/1:52:40,12:40:1402:12:432:-23.5676,0,-110.82	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:76:31,45:31:1104:45:1616:-122.85,0,-76.7924	1/1:86:0,86:0:0:86:3092:-278.502,-25.8886,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:178:83,95:83:2944:95:3397:-252.36,0,-211.613	1/1:180:0,180:0:0:180:6440:-579.668,-54.1854,0	0/1:28:9,19:9:324:19:680:-53.1003,0,-21.077	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	0/1:194:122,72:122:4334:72:2584:-174.28,0,-331.838	1/1:134:1,133:1:36:133:4725:-421.732,-36.7397,0	0/1:25:16,9:16:576:9:324:-21.9235,0,-44.6492	0/1:111:45,66:45:1603:66:2372:-180.323,0,-111.145	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:91:0,91:0:0:91:3248:-292.54,-27.3937,0	1/1:40:0,40:0:0:40:1440:-129.897,-12.0412,0	1/1:162:0,162:0:0:162:5815:-523.437,-48.7669,0	1/1:134:0,134:0:0:134:4789:-431.037,-40.338,0	0/1:99:59,40:59:2099:40:1432:-99.3678,0,-159.377	0/1:68:41,27:41:1468:27:968:-66.9673,0,-111.946	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:100:43,57:43:1539:57:2022:-152.145,0,-108.699	0/1:146:69,77:69:2456:77:2764:-205.048,0,-177.345	1/1:296:1,295:1:36:295:10588:-949.219,-85.5066,0	1/1:73:0,73:0:0:73:2615:-235.54,-21.9752,0	1/1:37:0,37:0:0:37:1332:-120.179,-11.1381,0	1/1:68:0,68:0:0:68:2435:-219.401,-20.47,0	0/1:130:70,60:70:2487:60:2160:-155.525,0,-184.95	0/1:28:15,13:15:536:13:464:-33.6687,0,-40.146	0/1:87:40,47:40:1410:47:1679:-125.206,0,-101.006	0/1:48:28,20:28:996:20:720:-50.6789,0,-75.5054	0/1:29:11,18:11:396:18:639:-49.1084,0,-27.2529	0/1:54:20,34:20:711:34:1205:-92.4977,0,-48.06	0/1:53:37,16:37:1324:16:572:-35.8573,0,-103.508	1/1:116:0,116:0:0:116:4149:-373.577,-34.9195,0	1/1:81:0,81:0:0:81:2908:-261.94,-24.3834,0
chr07	3373419	.	C	T	132349	PASS	AB=0.480916;ABP=17.1;AC=137;AF=0.728723;AN=188;AO=6332;CIGAR=1X;DP=8664;DPB=8664;DPRA=0;EPP=13219.5;EPPR=5025.69;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.8582;MQMR=59.982;NS=94;NUMALT=1;ODDS=1.90918;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223352;QR=83247;RO=2329;RPL=6270;RPP=13219.5;RPPR=5034.35;RPR=62;RUN=1;SAF=0;SAP=13752.8;SAR=6332;SRF=1;SRP=5051.69;SRR=2328;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:28,13:28:1008:13:444:-27.9418,0,-78.6941	1/1:97:1,96:1:36:96:3362:-299.193,-25.6016,0	1/1:122:0,122:0:0:122:4308:-387.895,-36.7257,0	0/1:158:78,80:78:2769:80:2839:-208.178,0,-201.888	0/1:82:43,39:43:1529:39:1392:-100.894,0,-113.217	0/1:64:28,36:28:1004:36:1269:-95.2367,0,-71.4099	0/1:141:60,81:60:2141:81:2823:-211.846,0,-150.511	1/1:119:1,118:1:36:118:4183:-373.052,-32.2243,0	0/1:110:83,27:83:2972:27:953:-52.97,0,-234.571	0/1:85:63,22:63:2268:22:777:-44.6628,0,-178.794	1/1:35:0,35:0:0:35:1203:-108.567,-10.5361,0	0/1:58:24,34:24:852:34:1216:-92.286,0,-59.5406	1/1:59:0,59:0:0:59:2105:-189.717,-17.7608,0	1/1:52:0,52:0:0:52:1856:-166.462,-15.6536,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	0/1:44:18,25:18:636:25:900:-68.0089,0,-44.2643	1/1:50:0,50:0:0:50:1777:-160.21,-15.0515,0	1/1:40:0,40:0:0:40:1436:-129.534,-12.0412,0	0/1:35:13,22:13:468:22:792:-61.0696,0,-31.9236	0/1:257:116,141:116:4160:141:4929:-365.826,0,-297.217	0/1:142:74,68:74:2636:68:2403:-173.779,0,-194.581	1/1:173:0,173:0:0:173:5962:-536.692,-52.0782,0	0/1:109:48,61:48:1705:61:2188:-164.369,0,-120.922	1/1:103:9,94:9:324:94:3341:-271.4,-1.50024,0	0/1:94:44,50:44:1565:50:1788:-132.849,0,-112.843	1/1:290:0,289:0:0:289:10113:-909.842,-86.9977,0	0/1:199:88,111:88:3152:111:3920:-293.079,0,-224	0/1:29:15,14:15:540:14:504:-36.9673,0,-40.2067	1/1:329:1,328:1:36:328:11435:-1025.44,-95.4406,0	0/1:103:47,56:47:1684:56:1971:-146.632,0,-120.841	1/1:138:0,138:0:0:138:4855:-437.081,-41.5421,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:129:0,129:0:0:129:4568:-411.287,-38.8329,0	0/1:197:104,93:104:3717:93:3294:-237.371,0,-275.427	0/1:38:20,18:20:716:18:640:-46.4902,0,-53.3286	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:145:1,144:1:36:144:5065:-452.364,-40.0601,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	0/1:157:74,83:74:2641:83:2897:-213.696,0,-190.673	0/1:51:27,24:27:972:24:864:-62.73,0,-72.4454	1/1:45:0,45:0:0:45:1570:-141.585,-13.5464,0	0/1:113:68,45:68:2431:45:1548:-105.586,0,-185.029	1/1:162:0,162:0:0:162:5688:-512.034,-48.7669,0	1/1:204:0,204:0:0:204:7033:-632.956,-61.4101,0	0/1:116:60,56:60:2135:56:2004:-145.714,0,-157.498	0/1:99:42,57:42:1504:57:2044:-154.419,0,-105.853	0/1:177:134,43:134:4789:43:1540:-84.9095,0,-377.883	0/1:14:8,6:8:288:6:208:-14.8415,0,-22.053	0/1:167:77,90:77:2764:90:3194:-237.408,0,-198.729	0/1:43:25,18:25:891:18:648:-45.6862,0,-67.5645	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:168:0,168:0:0:168:5983:-538.562,-50.573,0	0/1:55:39,16:39:1400:16:572:-35.2568,0,-109.743	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:73:32,41:32:1144:41:1453:-109.087,0,-81.2943	1/1:85:0,85:0:0:85:3021:-272.119,-25.5876,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:172:79,93:79:2831:93:3257:-241.57,0,-203.251	1/1:172:3,169:3:108:169:5961:-526.517,-41.702,0	0/1:27:8,19:8:288:19:654:-51.0498,0,-18.1396	1/1:87:0,87:0:0:87:3093:-278.597,-26.1896,0	0/1:193:123,70:123:4408:70:2493:-166.464,0,-338.793	1/1:127:3,124:3:108:124:4385:-384.72,-28.1556,0	0/1:25:16,9:16:568:9:318:-21.4196,0,-43.9261	0/1:115:46,69:46:1635:69:2457:-186.764,0,-112.82	1/1:58:0,58:0:0:58:2061:-185.759,-17.4597,0	1/1:22:0,22:0:0:22:765:-69.1677,-6.62266,0	1/1:93:0,93:0:0:93:3321:-299.106,-27.9958,0	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	1/1:159:0,159:0:0:159:5659:-509.405,-47.8638,0	1/1:132:0,132:0:0:132:4657:-419.168,-39.736,0	0/1:104:64,40:64:2273:40:1332:-88.8503,0,-173.524	0/1:64:40,24:40:1440:24:837:-56.3797,0,-110.632	0/1:6:2,4:2:72:4:140:-11.138,0,-5.03054	0/1:100:43,57:43:1548:57:2037:-153.44,0,-109.51	0/1:147:72,74:72:2569:74:2637:-193.263,0,-187.148	1/1:290:0,290:0:0:290:10247:-922.15,-87.2987,0	1/1:71:0,71:0:0:71:2514:-226.461,-21.3731,0	1/1:36:0,36:0:0:36:1292:-116.581,-10.8371,0	1/1:65:0,65:0:0:65:2308:-207.971,-19.567,0	0/1:130:71,59:71:2528:59:2112:-151.209,0,-188.636	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:86:39,47:39:1395:47:1684:-125.958,0,-99.9598	0/1:48:29,19:29:1029:19:669:-46.0841,0,-78.4717	0/1:29:11,18:11:387:18:648:-49.922,0,-26.4361	0/1:56:21,35:21:747:35:1256:-96.4867,0,-50.6966	0/1:52:37,15:37:1320:15:521:-31.5612,0,-103.448	1/1:113:0,113:0:0:113:3922:-353.169,-34.0164,0	1/1:80:0,80:0:0:80:2819:-253.943,-24.0824,0
chr07	3373431	.	A	T	40289.4	PASS	AB=0.51639;ABP=13.6873;AC=51;AF=0.271277;AN=188;AO=2377;CIGAR=1X;DP=8947;DPB=8947;DPRA=1.12152;EPP=5164.6;EPPR=14267.4;GTI=0;LEN=1;MEANALT=1.01754;MQM=59.9756;MQMR=59.8452;NS=94;NUMALT=1;ODDS=1.2428;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84949;QR=235499;RO=6569;RPL=2377;RPP=5164.6;RPPR=14267.4;RPR=0;RUN=1;SAF=0;SAP=5164.6;SAR=2377;SRF=0;SRP=14267.4;SRR=6569;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:11,29:11:396:29:1044:-82.2336,0,-23.9415	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.72	0/0:124:124,0:124:4460:0:0:0,-37.3277,-401.568	0/1:162:82,80:82:2944:80:2865:-209.318,0,-216.38	0/1:85:41,44:41:1468:44:1576:-116.544,0,-106.828	0/1:65:36,29:36:1283:29:1033:-73.7155,0,-96.1975	0/1:146:84,62:84:3001:62:2224:-156.474,0,-226.282	0/0:124:123,1:123:4408:1:36:0,-33.7294,-393.293	0/1:107:27,80:27:968:80:2861:-225.514,0,-55.2272	0/1:82:22,60:22:768:60:2156:-169.622,0,-44.7532	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:57:32,25:32:1144:25:896:-63.8016,0,-86.11	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.227	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.486	0/1:44:26,18:26:936:18:648:-45.4066,0,-71.3062	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.514	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.773	0/1:37:23,14:23:820:14:486:-32.9296,0,-62.9844	0/1:275:152,123:152:5448:123:4397:-313.118,0,-406.833	0/1:147:73,74:73:2616:74:2648:-194.315,0,-191.435	0/0:184:184,0:184:6578:0:0:0,-55.3895,-591.968	0/1:108:60,48:60:2148:48:1709:-121.583,0,-161.072	0/0:104:96,8:96:3440:8:288:0,-5.03971,-283.544	0/1:98:53,45:53:1904:45:1605:-115.237,0,-142.08	0/0:307:307,0:307:11017:0:0:0,-92.4162,-991.344	0/1:207:118,89:118:4240:89:3187:-224.741,0,-319.458	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9673	0/0:344:343,1:343:12300:1:36:0,-99.956,-1103.22	0/1:110:60,50:60:2147:50:1796:-128.809,0,-160.36	0/0:144:144,0:144:5159:0:0:0,-43.3483,-464.375	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/0:134:134,0:134:4824:0:0:0,-40.338,-434.256	0/1:197:93,104:93:3340:104:3706:-274.438,0,-241.509	0/1:38:18,20:18:644:20:701:-51.9726,0,-46.8515	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:150:150,0:150:5369:0:0:0,-45.1545,-483.294	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:165:88,77:88:3108:77:2745:-197.621,0,-230.271	0/1:55:25,30:25:892:30:1076:-80.588,0,-64.0424	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.921	0/1:116:45,71:45:1620:71:2541:-194.02,0,-111.17	0/0:169:169,0:169:6057:0:0:0,-50.8741,-545.228	0/0:222:222,0:222:7972:0:0:0,-66.8287,-717.352	0/1:121:59,62:59:2120:62:2168:-158.956,0,-154.644	0/1:100:57,43:57:2052:43:1536:-108.43,0,-154.827	0/1:183:44,138:44:1580:138:4956:-391.189,0,-86.7896	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6371	0/1:171:95,76:95:3403:76:2713:-192.936,0,-255.004	0/1:44:18,26:18:648:26:936:-71.3141,0,-45.3852	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:175:175,0:175:6281:0:0:0,-52.6802,-565.301	0/1:58:16,42:16:572:42:1504:-118.195,0,-34.3537	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:76:44,32:44:1580:32:1152:-81.1119,0,-119.611	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.385	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:179:98,81:98:3488:81:2867:-204.379,0,-260.246	0/0:177:177,0:177:6339:0:0:0,-53.2823,-570.585	0/1:30:19,11:19:684:11:392:-26.5892,0,-52.8594	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.381	0/1:196:72,124:72:2576:124:4437:-340.498,0,-172.992	0/0:136:135,1:135:4852:1:36:0,-37.3418,-433.141	0/1:25:9,16:9:324:16:572:-44.2877,0,-21.9235	0/1:115:68,47:68:2424:47:1688:-117.588,0,-183.797	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:93:93,0:93:3309:0:0:0,-27.9958,-298.028	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.662	0/0:160:160,0:160:5720:0:0:0,-48.1648,-514.893	0/0:134:134,0:134:4820:0:0:0,-40.338,-433.825	0/1:104:40,64:40:1432:64:2274:-173.613,0,-97.8632	0/1:69:27,42:27:972:42:1504:-114.884,0,-67.0268	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.507	0/1:102:59,43:59:2120:43:1548:-108.908,0,-160.306	0/1:153:78,75:78:2800:75:2666:-194.125,0,-206.179	0/0:302:300,2:300:10761:2:56:0,-85.6333,-963.102	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.11	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.179	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.207	0/1:133:60,73:60:2156:73:2628:-196.729,0,-154.262	0/1:28:13,15:13:464:15:536:-40.146,0,-33.6687	0/1:89:47,42:47:1692:42:1504:-108.862,0,-125.775	0/1:50:20,30:20:720:30:1080:-82.4618,0,-50.0769	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	0/1:57:36,21:36:1292:21:752:-50.8475,0,-99.4241	0/1:51:14,37:14:504:37:1324:-104.11,0,-30.344	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.812	0/0:81:80,1:80:2872:1:36:0,-20.7869,-255.106
chr07	3373442	.	G	A	137997	PASS	AB=0.483906;ABP=13.3548;AC=137;AF=0.728723;AN=188;AO=6599;CIGAR=1X;DP=8989;DPB=8989;DPRA=0;EPP=14332.6;EPPR=5188.49;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.8359;MQMR=59.9874;NS=94;NUMALT=1;ODDS=1.22289;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235957;QR=85656;RO=2388;RPL=6599;RPP=14332.6;RPPR=5188.49;RPR=0;RUN=1;SAF=0;SAP=14332.6;SAR=6599;SRF=0;SRP=5188.49;SRR=2388;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:29,13:29:1044:13:464:-29.4542,0,-81.6315	1/1:102:0,102:0:0:102:3655:-329.149,-30.7051,0	1/1:125:0,125:0:0:125:4428:-398.689,-37.6288,0	0/1:163:80,83:80:2872:83:2979:-219.228,0,-209.649	0/1:86:44,42:44:1580:42:1497:-109.115,0,-116.603	0/1:63:29,34:29:1040:34:1209:-90.1411,0,-74.9495	0/1:146:62,84:62:2232:84:2975:-223.949,0,-157.193	1/1:128:1,127:1:36:127:4552:-406.247,-34.9336,0	0/1:110:83,27:83:2964:27:957:-53.3306,0,-233.88	0/1:83:61,22:61:2184:22:788:-46.2593,0,-171.84	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:58:25,33:25:892:33:1184:-89.4078,0,-63.1399	1/1:60:1,59:1:36:59:2116:-187.11,-14.4635,0	1/1:54:0,54:0:0:54:1925:-172.667,-16.2556,0	1/1:55:0,55:0:0:55:1980:-178.247,-16.5567,0	0/1:43:18,25:18:629:25:881:-66.6536,0,-43.9895	1/1:50:0,50:0:0:50:1787:-161.105,-15.0515,0	1/1:41:0,41:0:0:41:1476:-133.133,-12.3422,0	0/1:37:14,23:14:504:23:815:-62.5327,0,-34.5596	0/1:276:123,153:123:4420:153:5433:-405.393,0,-314.886	0/1:147:75,72:75:2680:72:2580:-188.197,0,-197.037	1/1:181:0,181:0:0:181:6470:-582.382,-54.4864,0	0/1:111:49,62:49:1756:62:2224:-167.005,0,-124.91	1/1:105:8,97:8:288:97:3469:-286.152,-5.34074,0	0/1:100:45,55:45:1612:55:1976:-147.954,0,-115.267	1/1:307:0,306:0:0:306:10930:-983.314,-92.1152,0	0/1:204:88,116:88:3145:116:4164:-313.525,0,-221.864	0/1:29:15,14:15:540:14:504:-36.9673,0,-40.2067	1/1:342:1,341:1:36:341:12210:-1095.13,-99.354,0	0/1:111:50,61:50:1796:61:2175:-162.586,0,-128.508	1/1:144:0,144:0:0:144:5123:-461.135,-43.3483,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:137:0,137:0:0:137:4924:-443.252,-41.2411,0	0/1:201:106,95:106:3816:95:3404:-246.062,0,-283.128	0/1:38:20,18:20:716:18:648:-47.2127,0,-53.3286	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:153:1,152:1:36:152:5433:-485.437,-42.4593,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:166:78,88:78:2788:88:3165:-235.099,0,-201.19	0/1:55:30,25:30:1072:25:900:-64.7628,0,-80.2276	1/1:49:0,49:0:0:49:1733:-156.251,-14.7505,0	0/1:117:71,46:71:2552:46:1656:-114.108,0,-194.709	1/1:170:0,170:0:0:170:6064:-545.858,-51.1751,0	1/1:219:0,219:0:0:219:7853:-706.716,-65.9256,0	0/1:121:61,60:61:2188:60:2126:-155.18,0,-160.761	0/1:100:43,57:43:1544:57:2052:-154.827,0,-109.15	0/1:184:139,45:139:4980:45:1605:-88.6474,0,-392.958	0/1:13:8,5:8:284:5:180:-12.6355,0,-21.99	0/1:172:77,95:77:2753:95:3408:-255.154,0,-196.233	0/1:43:25,18:25:900:18:648:-45.6862,0,-68.3767	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:175:0,174:0:0:174:6212:-558.775,-52.3792,0	0/1:58:42,16:42:1512:16:576:-34.7152,0,-118.915	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:77:32,45:32:1152:45:1590:-120.205,0,-80.8108	1/1:83:0,83:0:0:83:2988:-269.146,-24.9855,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:181:83,98:83:2988:98:3497:-260.453,0,-214.665	1/1:181:0,181:0:0:181:6450:-580.576,-54.4864,0	0/1:29:10,19:10:356:19:680:-52.7993,0,-23.6514	1/1:90:1,89:1:21:89:3150:-281.622,-24.9928,0	0/1:194:122,72:122:4380:72:2578:-173.742,0,-335.972	1/1:137:2,135:2:72:135:4852:-429.901,-34.4044,0	0/1:25:16,9:16:576:9:324:-21.9235,0,-44.6492	0/1:113:47,66:47:1692:66:2364:-179.001,0,-118.55	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:23:0,23:0:0:23:809:-73.1283,-6.92369,0	1/1:93:0,93:0:0:93:3311:-298.207,-27.9958,0	1/1:42:0,42:0:0:42:1489:-134.302,-12.6433,0	1/1:159:0,159:0:0:159:5697:-512.823,-47.8638,0	1/1:135:0,135:0:0:135:4852:-436.703,-40.6391,0	0/1:105:64,41:64:2304:41:1446:-98.7662,0,-176.012	0/1:69:42,27:42:1508:27:968:-66.6663,0,-115.244	0/1:6:2,4:2:72:4:144:-11.507,0,-5.03054	0/1:102:43,59:43:1548:59:2124:-160.666,0,-108.908	0/1:154:75,79:75:2692:79:2805:-206.326,0,-196.166	1/1:307:0,307:0:0:307:10992:-988.935,-92.4162,0	1/1:72:0,72:0:0:72:2588:-233.113,-21.6742,0	1/1:37:0,37:0:0:37:1332:-120.179,-11.1381,0	1/1:68:0,68:0:0:68:2442:-220.028,-20.47,0	0/1:136:75,61:75:2688:61:2177:-155.247,0,-201.225	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:90:43,47:43:1544:47:1692:-125.474,0,-112.16	0/1:50:30,20:30:1080:20:720:-50.0769,0,-82.4618	0/1:29:11,18:11:396:18:648:-49.922,0,-27.2529	0/1:57:21,36:21:756:36:1281:-98.4317,0,-51.2085	0/1:53:37,16:37:1324:16:576:-36.2188,0,-103.508	1/1:118:0,118:0:0:118:4210:-379.064,-35.5215,0	1/1:85:0,85:0:0:85:3036:-273.455,-25.5876,0
chr07	3380414	.	A	T	212299	PASS	AB=0.526743;ABP=45.055;AC=137;AF=0.728723;AN=188;AO=10064;CIGAR=1X;DP=13290;DPB=13290;DPRA=0;EPP=21856.7;EPPR=6997.32;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9154;MQMR=59.9826;NS=94;NUMALT=1;ODDS=13.1187;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=359510;QR=114835;RO=3221;RPL=19;RPP=21692;RPPR=6807.54;RPR=10045;RUN=1;SAF=19;SAP=21692;SAR=10045;SRF=22;SRP=6807.54;SRR=3199;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:23,17:23:805:17:608:-42.7824,0,-60.7263	1/1:218:0,218:0:0:218:7800:-701.691,-65.6245,0	1/1:203:0,203:0:0:203:7259:-653.079,-61.1091,0	0/1:323:158,164:158:5632:164:5870:-431.118,0,-409.71	0/1:158:81,77:81:2897:77:2751:-200.269,0,-213.401	0/1:34:11,23:11:392:23:828:-64.6091,0,-25.385	0/1:141:76,65:76:2710:65:2317:-166.074,0,-201.698	1/1:106:0,106:0:0:106:3783:-340.647,-31.9092,0	0/1:104:60,44:60:2140:44:1576:-110.824,0,-161.561	0/1:199:101,98:101:3608:98:3524:-257.463,0,-265.022	1/1:74:0,74:0:0:74:2615:-235.596,-22.2762,0	0/1:85:43,42:43:1503:42:1512:-110.787,0,-109.972	1/1:87:0,87:0:0:87:3128:-281.732,-26.1896,0	1/1:81:0,81:0:0:81:2899:-261.146,-24.3834,0	1/1:79:0,79:0:0:79:2823:-254.309,-23.7814,0	0/1:66:27,39:27:960:39:1400:-106.431,0,-66.8483	1/1:87:0,87:0:0:87:3092:-278.508,-26.1896,0	1/1:71:0,71:0:0:71:2532:-228.131,-21.3731,0	0/1:57:26,31:26:928:31:1108:-82.8723,0,-66.6795	0/1:269:130,139:130:4653:139:4961:-365.644,0,-337.953	0/1:229:101,128:101:3607:128:4565:-342.078,0,-255.9	1/1:177:1,176:1:36:176:6277:-561.427,-49.684,0	0/1:105:52,53:52:1852:53:1900:-139.67,0,-135.352	1/1:188:7,181:7:252:181:6450:-557.513,-33.5647,0	0/1:186:63,123:63:2247:123:4390:-339.268,0,-146.491	1/1:547:2,545:2:72:545:19467:-1744.34,-157.827,0	0/1:252:127,125:127:4544:125:4464:-326.057,0,-333.267	0/1:45:22,23:22:784:23:820:-60.5762,0,-57.2075	1/1:457:1,456:1:32:456:16351:-1467.03,-134.371,0	0/1:184:78,106:78:2791:106:3781:-285.099,0,-196.04	1/1:218:0,218:0:0:218:7758:-697.624,-65.6245,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:26:17,9:17:608:9:324:-21.6791,0,-47.2252	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:293:0,293:0:0:293:10468:-942.038,-88.2018,0	0/1:384:181,203:181:6450:203:7268:-538.564,0,-464.991	0/1:63:26,37:26:936:37:1328:-100.857,0,-65.5946	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:169:2,167:2:72:167:5968:-530.39,-44.0373,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:253:117,136:117:4157:136:4855:-360.944,0,-298.154	0/1:77:37,40:37:1323:40:1428:-105.638,0,-96.192	1/1:82:0,82:0:0:82:2915:-262.586,-24.6845,0	0/1:171:84,87:84:2969:87:3098:-227.57,0,-215.965	1/1:259:0,259:0:0:259:9246:-832.104,-77.9668,0	1/1:286:1,284:1:27:284:10140:-909.787,-83.4087,0	0/1:248:121,127:121:4344:127:4548:-334.831,0,-316.478	0/1:240:103,137:103:3672:137:4904:-369.264,0,-258.118	0/1:302:126,176:126:4516:176:6252:-471.864,0,-315.696	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	0/1:188:82,106:82:2940:106:3768:-282.679,0,-208.24	0/1:70:39,31:39:1400:31:1108:-78.9589,0,-105.227	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:207:1,206:1:36:206:7343:-657.28,-58.7149,0	0/1:73:38,35:38:1352:35:1246:-90.467,0,-100.005	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:36:13,23:13:460:23:811:-62.4729,0,-30.8983	0/1:52:25,27:25:896:27:956:-70.694,0,-65.3068	1/1:177:0,177:0:0:177:6340:-570.668,-53.2823,0	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:229:124,105:124:4430:105:3759:-269.573,0,-329.935	1/1:390:2,388:2:72:388:13855:-1239.84,-110.565,0	0/1:132:45,87:45:1603:87:3111:-240.469,0,-104.823	1/1:129:0,129:0:0:129:4615:-415.513,-38.8329,0	0/1:211:105,106:105:3746:106:3800:-278.68,0,-273.823	1/1:134:1,133:1:36:133:4756:-424.6,-36.7397,0	0/1:24:8,16:8:288:16:568:-44.2271,0,-19.0427	0/1:84:42,42:42:1466:42:1503:-110.277,0,-106.944	1/1:76:0,74:0:0:74:2628:-236.406,-22.2762,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:140:0,140:0:0:140:5011:-451.137,-42.1442,0	1/1:101:0,101:0:0:101:3616:-325.608,-30.404,0	1/1:219:0,219:0:0:219:7803:-702.284,-65.9256,0	1/1:210:0,210:0:0:210:7508:-675.763,-63.2163,0	0/1:258:107,151:107:3816:151:5395:-408.012,0,-265.973	0/1:158:75,83:75:2684:83:2956:-218.68,0,-194.242	0/1:31:10,21:10:356:21:748:-58.3134,0,-23.0493	0/1:178:73,105:73:2616:105:3748:-283.933,0,-182.104	0/1:163:86,77:86:3068:77:2740:-197.768,0,-227.282	1/1:375:2,373:2:72:373:13303:-1190.11,-106.05,0	1/1:114:0,114:0:0:114:4071:-366.577,-34.3174,0	1/1:54:0,54:0:0:54:1919:-172.986,-16.2556,0	1/1:123:0,123:0:0:123:4390:-395.265,-37.0267,0	0/1:173:78,95:78:2763:95:3399:-254.044,0,-196.835	0/1:66:41,24:41:1456:24:864:-58.1558,0,-111.409	0/1:93:50,43:50:1769:43:1536:-110.537,0,-131.495	0/1:84:51,33:51:1812:33:1176:-80.8612,0,-138.075	0/1:36:19,17:19:671:17:612:-44.5587,0,-49.8787	0/1:79:37,42:37:1301:42:1512:-112.585,0,-93.6079	0/1:70:47,23:47:1671:23:820:-53.0504,0,-129.604	1/1:132:0,132:0:0:132:4721:-425.049,-39.736,0	1/1:129:0,129:0:0:129:4616:-415.585,-38.8329,0
chr07	3802692	.	G	A	242728	PASS	AB=0.552572;ABP=182.695;AC=136;AF=0.723404;AN=188;AO=11666;CIGAR=1X;DP=15054;DPB=15054;DPRA=0;EPP=25335.4;EPPR=7329.56;GTI=5;LEN=1;MEANALT=1.1383;MQM=54.0268;MQMR=59.778;NS=94;NUMALT=1;ODDS=1.72545;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=415016;QR=116660;RO=3374;RPL=0;RPP=25335.4;RPPR=7329.56;RPR=11666;RUN=1;SAF=0;SAP=25335.4;SAR=11666;SRF=0;SRP=7329.56;SRR=3374;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:19,25:19:659:25:892:-66.9696,0,-46.387	1/1:297:0,297:0:0:297:10566:-946.855,-89.4059,0	1/1:185:0,185:0:0:185:6577:-590.239,-55.6906,0	0/1:301:127,174:127:4377:174:6169:-463.512,0,-303.224	0/1:146:63,83:63:2207:83:2913:-217.512,0,-154.923	0/1:136:67,69:67:2359:69:2456:-177.717,0,-171.607	0/1:217:99,117:99:3395:117:4139:-306.27,0,-240.37	1/1:293:0,293:0:0:293:10355:-927.726,-88.2018,0	0/1:118:63,55:63:2177:55:1949:-139.44,0,-160.669	0/1:181:90,91:90:3123:91:3229:-235.753,0,-226.809	1/1:58:0,58:0:0:58:2081:-186.904,-17.4597,0	0/1:82:38,44:38:1309:44:1557:-114.926,0,-93.4224	1/1:126:0,126:0:0:126:4481:-400.999,-37.9298,0	1/1:80:0,80:0:0:80:2836:-254.435,-24.0824,0	1/1:59:0,59:0:0:59:2109:-189.736,-17.7608,0	0/1:45:22,23:22:747:23:828:-60.6918,0,-53.9987	1/1:95:0,95:0:0:95:3383:-302.921,-28.5979,0	1/1:45:0,45:0:0:45:1607:-144.547,-13.5464,0	0/1:34:16,17:16:540:17:608:-43.8495,0,-38.6275	0/1:408:162,246:162:5594:246:8776:-663.595,0,-380.763	0/1:189:88,100:88:3044:100:3533:-260.036,0,-217.19	1/1:175:0,175:0:0:175:6244:-560.576,-52.6803,0	0/1:150:66,83:66:2334:83:2952:-220.106,0,-164.342	1/1:189:17,172:17:580:172:6139:-498.168,-4.37715,0	0/1:112:64,48:64:2184:48:1727:-121.548,0,-163.08	1/1:604:2,602:2:72:602:21410:-1915.59,-174.985,0	0/1:295:140,155:140:4848:155:5539:-407.281,0,-347.666	0/1:39:20,19:20:708:19:661:-47.99,0,-52.3054	1/1:418:0,418:0:0:418:14881:-1336.82,-125.831,0	0/1:498:159,339:159:5578:339:12061:-932.447,0,-352.094	1/1:238:0,238:0:0:238:8510:-763.244,-71.6451,0	1/1:7:0,7:0:0:7:252:-22.8047,-2.10721,0	0/1:21:5,16:5:180:16:572:-45.2949,0,-10.2221	1/1:16:0,16:0:0:16:576:-51.8555,-4.81648,0	1/1:5:0,5:0:0:5:180:-16.5048,-1.50515,0	0/1:5:2,3:2:59:3:108:-8.54469,0,-4.09899	1/1:220:0,219:0:0:219:7772:-698.02,-65.9256,0	0/1:353:150,203:150:5173:203:7195:-539.36,0,-359.448	0/1:38:15,23:15:509:23:815:-61.8676,0,-34.6686	0/1:4:2,2:2:59:2:72:-5.62291,0,-4.40002	1/1:503:9,494:9:305:494:17616:-1553.3,-123.641,0	1/1:32:0,32:0:0:32:1140:-102.575,-9.63296,0	0/1:177:103,74:103:3588:74:2623:-182.334,0,-269.826	0/1:75:42,33:42:1460:33:1173:-83.1264,0,-109.098	1/1:90:0,90:0:0:90:3201:-287.615,-27.0927,0	0/1:152:87,65:87:2994:65:2318:-162.898,0,-223.934	1/1:245:0,245:0:0:245:8678:-776.844,-73.7524,0	1/1:431:0,431:0:0:431:15276:-1370.1,-129.744,0	0/1:275:102,172:102:3544:172:6116:-466.482,0,-236.324	0/1:282:115,167:115:3966:167:5937:-448.512,0,-272.234	0/1:244:113,130:113:3931:130:4648:-344.577,0,-280.46	0/1:10:2,8:2:59:8:288:-23.1187,0,-2.59384	0/1:257:132,125:132:4582:125:4438:-320.432,0,-335.147	0/1:74:21,53:21:719:53:1888:-147.842,0,-42.7486	1/1:30:0,30:0:0:30:1069:-95.9709,-9.0309,0	1/1:295:0,295:0:0:295:10499:-941.325,-88.8039,0	0/1:71:36,35:36:1242:35:1252:-91.4007,0,-90.6984	1/1:11:0,11:0:0:11:396:-35.9493,-3.31133,0	0/1:26:8,18:8:273:18:639:-49.749,0,-17.0734	0/1:126:57,69:57:2013:69:2455:-181.043,0,-143.472	1/1:136:1,135:1:36:135:4815:-428.447,-37.3418,0	0/1:5:1,4:1:36:4:144:-11.7129,0,-2.09312	0/1:437:146,290:146:5092:290:10336:-795.272,0,-326.805	1/1:432:1,431:1:36:431:15373:-1375.83,-126.447,0	0/1:140:79,61:79:2755:61:2192:-155.028,0,-206.044	1/1:167:0,167:0:0:167:5928:-532.206,-50.272,0	0/1:322:156,165:156:5361:165:5895:-431.129,0,-385.731	1/1:128:1,127:1:36:127:4529:-402.759,-34.9336,0	0/1:19:8,11:8:275:11:383:-29.0395,0,-19.3639	0/1:96:41,55:41:1390:55:1976:-148.21,0,-96.4665	1/1:104:0,102:0:0:102:3640:-326.913,-30.7051,0	1/1:42:0,42:0:0:42:1497:-134.717,-12.6433,0	1/1:190:0,190:0:0:190:6736:-603.242,-57.1957,0	1/1:201:0,200:0:0:200:7099:-634.947,-60.206,0	1/1:249:0,249:0:0:249:8883:-796.034,-74.9565,0	1/1:255:0,255:0:0:255:9118:-817.24,-76.7627,0	0/1:216:113,103:113:3893:103:3656:-261.899,0,-285.096	0/1:185:81,103:81:2818:103:3668:-273.369,0,-198.081	0/1:16:7,9:7:237:9:324:-24.4259,0,-16.8426	0/1:180:70,110:70:2396:110:3925:-298.13,0,-161.706	0/1:174:93,81:93:3205:81:2862:-204.081,0,-236.286	1/1:309:1,307:1:36:307:10941:-978.935,-89.4785,0	1/1:103:0,103:0:0:103:3643:-326.893,-31.0061,0	1/1:62:1,61:1:36:61:2172:-191.92,-15.0656,0	1/1:95:0,95:0:0:95:3354:-300.71,-28.5979,0	0/1:135:61,74:61:2073:74:2611:-193.449,0,-146.197	0/1:47:24,23:24:804:23:800:-57.9228,0,-58.5121	0/1:74:34,40:34:1152:40:1414:-104.783,0,-81.7035	0/1:67:26,41:26:873:41:1456:-110.66,0,-58.7088	0/1:29:16,13:16:559:13:464:-33.1843,0,-41.9077	0/1:76:33,43:33:1116:43:1517:-113.18,0,-77.8534	0/1:82:56,26:56:1922:26:919:-58.1543,0,-148.562	1/1:262:0,262:0:0:262:9323:-835.592,-78.8699,0	1/1:87:1,86:1:32:86:3063:-271.526,-22.9903,0
chr07	3802724	.	GTT	ATG,ATT	332910	PASS	AB=0.554039,0.444333;ABP=205.546,217.933;AC=135,53;AF=0.718085,0.281915;AN=188;AO=12000,3565;CIGAR=1X1M1X,1X2M;DP=15592;DPB=15592;DPRA=0,1.21137;EPP=25887.3,7744.31;EPPR=5.18177;GTI=5;LEN=3,1;MEANALT=1.92553,2.30159;MQM=53.9641,59.7173;MQMR=60;NS=94;NUMALT=2;ODDS=4.55418;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=426696,127599;QR=36;RO=1;RPL=11980,3565;RPP=25887.3,7744.31;RPPR=5.18177;RPR=20,0;RUN=1,1;SAF=0,0;SAP=26060.7,7744.31;SAR=12000,3565;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,26,20:0:0:26,20:928,712:-133.657,-58.3861,-50.5593,-75.626,0,-69.6054	1/1:313:0,311,1:0:0:311,1:11040,36:-988.209,-93.6203,0,-985.271,-90.6409,-984.97	1/1:194:0,194,0:0:0:194,0:6904,0:-619.231,-58.3998,0,-619.231,-58.3998,-619.231	1/2:314:0,173,139:0:0:173,139:6170,4986:-908.146,-406.167,-354.089,-502.021,0,-460.178	1/2:148:0,83,65:0:0:83,65:2924,2325:-427.254,-189.914,-164.928,-237.695,0,-218.128	1/2:143:0,72,70:0:0:72,70:2571,2520:-413.23,-205.683,-184.009,-207.632,0,-186.56	1/2:224:0,120,103:0:0:120,103:4247,3680:-645.021,-300.01,-263.886,-345.007,0,-314.001	1/1:306:0,304,1:0:0:304,1:10793,36:-964.397,-91.5131,0,-961.459,-88.5357,-961.158	1/2:121:0,57,64:0:0:57,64:2026,2296:-351.86,-187.632,-170.473,-164.584,0,-145.318	1/2:191:0,94,97:0:0:94,97:3350,3447:-553.183,-281.235,-252.938,-272.303,0,-243.103	1/1:60:0,59,0:0:0:59,0:2068,0:-185.353,-17.7608,0,-185.353,-17.7608,-185.353	1/2:83:0,45,38:0:0:45,38:1597,1368:-241.396,-111.982,-98.4353,-129.771,0,-118.332	1/1:127:0,127,0:0:0:127,0:4521,0:-404.468,-38.2308,0,-404.468,-38.2308,-404.468	1/1:86:0,86,0:0:0:86,0:3031,0:-271.395,-25.8886,0,-271.395,-25.8886,-271.395	1/1:61:0,61,0:0:0:61,0:2164,0:-194.516,-18.3628,0,-194.516,-18.3628,-194.516	1/2:46:0,23,23:0:0:23,23:824,828:-134.522,-67.9189,-60.9952,-66.9606,0,-60.0369	1/1:97:0,97,0:0:0:97,0:3454,0:-309.44,-29.1999,0,-309.44,-29.1999,-309.44	1/1:49:0,49,0:0:0:49,0:1744,0:-156.799,-14.7505,0,-156.799,-14.7505,-156.799	1/2:37:0,18,19:0:0:18,19:641,684:-107.45,-56.1306,-50.7121,-51.6747,0,-45.9551	1/2:422:0,253,169:0:0:253,169:8977,6072:-1222.37,-495.688,-419.527,-727.041,0,-676.167	1/2:201:0,104,97:0:0:104,97:3662,3464:-579.537,-282.727,-251.42,-297.164,0,-267.964	1/1:180:0,180,0:0:0:180,0:6402,0:-574.967,-54.1854,0,-574.967,-54.1854,-574.967	1/2:155:0,85,70:0:0:85,70:3005,2508:-449.175,-204.898,-179.31,-244.632,0,-223.56	1/2:196:0,177,19:0:0:177,19:6266,680:-564.235,-55.7934,-2.51105,-508.799,0,-503.079	1/2:118:0,49,69:0:0:49,69:1748,2480:-344.704,-202.651,-187.9,-142.41,0,-121.639	1/1:625:0,621,1:0:0:621,1:22089,32:-1983.16,-186.94,0,-1980.58,-184.348,-1980.28	1/2:307:0,160,147:0:0:160,147:5715,5276:-894.016,-430.707,-382.542,-463.666,0,-419.415	1/2:42:0,21,21:0:0:21,21:754,756:-123.418,-62.0456,-55.724,-61.7316,0,-55.4099	1/1:423:0,423,0:0:0:423,0:15110,0:-1357.02,-127.336,0,-1357.02,-127.336,-1357.02	1/2:512:0,349,163:0:0:349,163:12432,5833:-1485.66,-475.947,-370.888,-1010.07,0,-961.005	1/1:247:0,247,0:0:0:247,0:8783,0:-788.562,-74.3544,0,-788.562,-74.3544,-788.562	1/1:7:0,7,0:0:0:7,0:252,0:-22.8047,-2.10721,0,-22.8047,-2.10721,-22.8047	1/2:22:0,16,6:0:0:16,6:576,216:-64.7755,-17.976,-13.1596,-47.1588,0,-45.3527	1/1:16:0,16,0:0:0:16,0:563,0:-50.8222,-4.81648,0,-50.8222,-4.81648,-50.8222	1/1:6:0,6,0:0:0:6,0:214,0:-19.5606,-1.80618,0,-19.5606,-1.80618,-19.5606	1/2:5:0,3,2:0:0:3,2:108,72:-15.0219,-6.23466,-5.33157,-9.14675,0,-8.54469	1/1:223:0,222,1:0:0:222,1:7937,36:-712.551,-66.8287,0,-709.613,-63.5314,-709.312	1/2:366:0,204,161:0:0:204,161:7246,5716:-1054.09,-465.702,-404.291,-588.385,0,-539.919	1/2:39:1,23,15:1:36:23,15:822,536:-107.061,-40.7058,-36.7197,-63.7152,0,-62.1373	1/2:4:0,2,2:0:0:2,2:72,72:-12.1001,-6.23466,-5.6326,-6.22497,0,-5.62291	1/1:514:0,508,6:0:0:508,6:18111,216:-1624.89,-152.923,0,-1607.26,-134.939,-1605.46	1/1:32:0,32,0:0:0:32,0:1130,0:-101.675,-9.63296,0,-101.675,-9.63296,-101.675	1/2:182:0,75,107:0:0:75,107:2683,3827:-530.301,-312.386,-289.809,-218.271,0,-186.061	1/2:75:0,33,42:0:0:33,42:1179,1512:-219.634,-123.715,-113.781,-96.277,0,-83.6337	1/1:92:0,92,0:0:0:92,0:3263,0:-293.168,-27.6948,0,-293.168,-27.6948,-293.168	1/2:162:0,71,91:0:0:71,91:2518,3216:-467.158,-262.263,-240.89,-205.249,0,-177.855	1/1:255:0,255,0:0:0:255,0:9037,0:-809.149,-76.7627,0,-809.149,-76.7627,-809.149	1/1:443:0,443,0:0:0:443,0:15677,0:-1403.35,-133.356,0,-1403.35,-133.356,-1403.35	1/2:295:0,177,117:0:0:177,117:6298,4196:-854.291,-342.263,-288.98,-512.052,0,-476.831	1/2:295:0,177,117:0:0:177,117:6306,4182:-853.228,-341.06,-287.778,-512.255,0,-477.034	1/2:249:0,131,117:0:0:131,117:4664,4189:-721.346,-341.591,-302.157,-379.752,0,-344.531	1/2:10:0,8,2:0:0:8,2:271,72:-28.1256,-6.23466,-3.82642,-22.2463,0,-21.6443	1/2:271:0,128,143:0:0:128,143:4581,5117:-789.159,-417.374,-378.842,-372.143,0,-329.095	1/2:78:0,54,23:0:0:54,23:1936,824:-225.14,-67.3435,-51.0879,-157.937,0,-151.014	1/1:31:0,31,0:0:0:31,0:1112,0:-99.6452,-9.33193,0,-99.6452,-9.33193,-99.6452	1/1:306:0,305,0:0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chr07	3802741	.	T	C	56799.5	PASS	AB=0.452994;ABP=151.424;AC=52;AF=0.276596;AN=188;AO=3536;CIGAR=1X;DP=15457;DPB=15457;DPRA=0.99403;EPP=7681.34;EPPR=25880.4;GTI=4;LEN=1;MEANALT=1.04762;MQM=59.7064;MQMR=54.0107;NS=94;NUMALT=1;ODDS=3.76908;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126261;QR=426650;RO=11917;RPL=3536;RPP=7681.34;RPPR=25880.4;RPR=0;RUN=1;SAF=0;SAP=7681.34;SAR=3536;SRF=0;SRP=25880.4;SRR=11917;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:25,19:25:900:19:680:-48.2838,0,-67.686	0/0:308:308,0:308:10962:0:0:0,-92.7172,-981.451	0/0:193:193,0:193:6909:0:0:0,-58.0988,-619.732	0/1:311:174,137:174:6240:137:4851:-342.615,0,-466.793	0/1:149:83,66:83:2969:66:2360:-167.782,0,-221.484	0/1:139:73,66:73:2609:66:2353:-170.16,0,-190.467	0/1:221:119,102:119:4276:102:3636:-260.892,0,-316.628	0/0:304:303,1:303:10819:1:36:0,-87.9148,-963.093	0/1:123:58,65:58:2088:65:2317:-171.759,0,-150.125	0/1:190:93,97:93:3329:97:3457:-254.139,0,-241.925	0/0:60:59,1:59:2124:1:36:0,-14.5591,-187.279	0/1:84:45,39:45:1616:39:1404:-101.373,0,-119.614	0/0:125:125,0:125:4443:0:0:0,-37.6287,-397.435	0/0:85:85,0:85:3052:0:0:0,-25.5875,-273.056	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.128	0/1:46:23,23:23:828:23:824:-60.6344,0,-60.3908	0/0:96:96,0:96:3448:0:0:0,-28.8989,-309.098	0/0:49:49,0:49:1764:0:0:0,-14.7505,-158.581	0/1:35:17,18:17:597:18:644:-47.7369,0,-43.3736	0/1:419:251,168:251:8982:168:6035:-417.102,0,-678.233	0/1:200:103,97:103:3692:97:3476:-252.691,0,-270.892	0/0:178:178,0:178:6385:0:0:0,-53.5833,-573.489	0/1:156:85,71:85:3048:71:2537:-181.458,0,-226.803	0/0:195:177,18:177:6325:18:648:0,-0.0820775,-508.777	0/1:117:48,69:48:1716:69:2460:-186.421,0,-119.056	0/0:618:618,0:618:22128:0:0:0,-186.037,-1986.56	0/1:305:159,146:159:5708:146:5183:-374.784,0,-419.284	0/1:42:21,21:21:752:21:756:-55.724,0,-55.2488	0/0:420:420,0:420:15008:0:0:0,-126.433,-1347.74	0/1:510:346,163:346:12360:163:5817:-369.934,0,-954.964	0/0:247:247,0:247:8846:0:0:0,-74.3544,-793.349	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.8047	0/1:22:16,6:16:576:6:212:-12.7988,0,-45.3527	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.4988	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.3777	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.54469	0/0:221:221,0:221:7940:0:0:0,-66.5276,-713.849	0/1:366:202,164:202:7233:164:5865:-417.754,0,-538.727	0/1:39:24,15:24:864:15:540:-37.14,0,-65.9664	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.62291	0/0:511:506,5:506:18172:5:180:0,-137.274,-1614.12	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.1773	0/1:182:74,108:74:2664:108:3872:-293.849,0,-184.345	0/1:75:33,42:33:1180:42:1512:-113.781,0,-83.7183	0/0:91:91,0:91:3246:0:0:0,-27.3937,-291.102	0/1:162:71,91:71:2544:91:3237:-242.784,0,-180.194	0/0:251:251,0:251:8958:0:0:0,-75.5585,-801.707	0/0:434:434,0:434:15505:0:0:0,-130.647,-1389.59	0/1:296:178,118:178:6392:118:4232:-291.949,0,-484.861	0/1:291:175,116:175:6280:116:4126:-283.909,0,-475.649	0/1:245:131,114:131:4700:114:4084:-293.984,0,-348.987	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8048	0/1:268:128,140:128:4570:140:4964:-366.182,0,-329.12	0/1:77:53,24:53:1904:24:823:-51.2,0,-148.344	0/0:31:31,0:31:1097:0:0:0,-9.33193,-98.1893	0/0:300:300,0:300:10708:0:0:0,-90.309,-959.077	0/1:76:37,39:37:1324:39:1381:-101.701,0,-96.1436	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9493	0/1:27:20,7:20:705:7:244:-14.1716,0,-55.3806	0/1:133:73,60:73:2605:60:2112:-150.275,0,-192.368	0/0:135:134,1:134:4820:1:36:0,-37.0408,-428.662	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.7129	0/1:443:292,151:292:10416:151:5417:-354.285,0,-800.478	0/0:443:442,1:442:15863:1:36:0,-129.758,-1417.86	0/1:143:62,81:62:2228:81:2897:-217.912,0,-157.359	0/0:165:164,1:164:5892:1:36:0,-46.7672,-526.05	0/1:331:168,160:168:6036:160:5706:-414.523,0,-441.328	0/0:131:130,1:130:4664:1:32:0,-36.2356,-415.314	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2122	0/1:97:54,43:54:1936:43:1536:-109.319,0,-144.323	0/0:107:107,0:107:3806:0:0:0,-32.2102,-341.948	0/0:46:46,0:46:1644:0:0:0,-13.8474,-147.778	0/0:192:192,0:192:6888:0:0:0,-57.7978,-616.805	0/0:205:205,0:205:7287:0:0:0,-61.7111,-651.568	0/0:256:255,1:255:9148:1:36:0,-73.6092,-816.329	0/0:258:258,0:258:9253:0:0:0,-77.6657,-829.381	0/1:228:110,118:110:3929:118:4221:-310.975,0,-282.219	0/1:197:107,90:107:3832:90:3228:-231.371,0,-284.62	0/1:16:10,6:10:345:6:212:-14.6083,0,-26.301	0/1:186:111,75:111:3961:75:2688:-186.167,0,-299.716	0/1:176:82,94:82:2929:94:3372:-250.706,0,-209.653	0/0:315:313,2:313:11256:2:72:0,-87.9877,-1002.71	0/0:105:105,0:105:3734:0:0:0,-31.6081,-334.184	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.325	0/0:95:95,0:95:3393:0:0:0,-28.5978,-304.119	0/1:141:77,64:77:2764:64:2300:-164.803,0,-205.549	0/1:47:23,24:23:828:24:860:-63.5652,0,-59.6973	0/1:80:42,38:42:1512:38:1338:-96.6254,0,-111.569	0/1:67:41,26:41:1472:26:936:-64.3905,0,-112.079	0/1:30:13,17:13:468:17:608:-46.0211,0,-33.2427	0/1:77:42,35:42:1493:35:1252:-89.7966,0,-111.27	0/1:81:26,55:26:936:55:1976:-153.727,0,-59.9355	0/0:266:266,0:266:9541:0:0:0,-80.074,-855.045	0/0:91:90,1:90:3217:1:36:0,-23.7955,-284.905
chr07	3804058	.	A	G	111321	PASS	AB=0.585615;ABP=214.578;AC=135;AF=0.718085;AN=188;AO=5296;CIGAR=1X;DP=6686;DPB=6686;DPRA=71.8817;EPP=11425.1;EPPR=2947.93;GTI=5;LEN=1;MEANALT=1.02151;MQM=59.9772;MQMR=59.9611;NS=94;NUMALT=1;ODDS=2.12801;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188373;QR=49651;RO=1388;RPL=5286;RPP=11416.4;RPPR=2947.93;RPR=10;RUN=1;SAF=5295;SAP=11494.4;SAR=1;SRF=1388;SRP=3017.01;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:8,17:8:288:17:608:-47.5263,0,-18.7417	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:80:0,79:0:0:79:2797:-251.608,-23.7814,0	0/1:88:33,55:33:1184:55:1953:-149.553,0,-80.3777	0/1:34:14,20:14:504:20:711:-54.0806,0,-35.4631	0/1:29:10,19:10:360:19:684:-53.1605,0,-24.0144	0/1:53:23,30:23:824:30:1072:-80.8373,0,-58.5287	1/1:110:0,110:0:0:110:3932:-354.073,-33.1133,0	0/1:77:28,49:28:1004:49:1748:-134.425,0,-67.4966	0/1:60:24,36:24:860:36:1279:-97.3506,0,-59.66	1/1:73:0,73:0:0:73:2572:-231.727,-21.9752,0	0/1:95:35,60:35:1248:60:2144:-164.63,0,-84.027	1/1:77:0,77:0:0:77:2718:-244.863,-23.1793,0	1/1:73:0,73:0:0:73:2558:-230.471,-21.9752,0	1/1:54:1,53:1:36:53:1895:-167.228,-12.6573,0	0/1:60:29,31:29:1032:31:1112:-82.3295,0,-75.1317	1/1:57:0,57:0:0:57:2011:-181.263,-17.1587,0	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	0/1:50:24,26:24:864:26:928:-68.7868,0,-63.0311	0/1:112:50,62:50:1796:62:2219:-166.258,0,-128.207	0/1:126:55,71:55:1972:71:2525:-189.571,0,-139.825	1/1:85:0,85:0:0:85:3041:-273.919,-25.5876,0	0/1:82:24,58:24:860:58:2071:-161.976,0,-53.0374	1/1:91:1,90:1:36:90:3216:-286.064,-23.7955,0	0/1:66:21,45:21:744:45:1567:-121.449,0,-47.4163	1/1:138:0,138:0:0:138:4898:-440.782,-41.5421,0	0/1:143:67,76:67:2392:76:2698:-200.016,0,-172.49	0/1:51:23,28:23:828:28:999:-74.872,0,-59.4916	1/1:96:0,96:0:0:96:3423:-308.284,-28.8989,0	0/1:51:14,37:14:500:37:1320:-103.749,0,-29.9836	1/1:76:1,75:1:36:75:2669:-236.856,-19.28,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:216:0,216:0:0:216:7725:-695.282,-65.0225,0	0/1:94:24,70:24:856:70:2478:-194.974,0,-49.0643	0/1:79:40,39:40:1440:39:1377:-100.445,0,-106.116	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:53:2,51:2:72:51:1801:-155.533,-9.11787,0	1/1:46:0,46:0:0:46:1597:-144.013,-13.8474,0	0/1:111:36,75:36:1283:75:2670:-207.131,0,-81.5001	0/1:114:57,57:57:2048:57:2027:-148.385,0,-150.274	1/1:68:0,68:0:0:68:2419:-217.966,-20.47,0	0/1:84:27,57:27:968:57:2044:-158.888,0,-62.1499	1/1:89:0,89:0:0:89:3180:-286.425,-26.7917,0	1/1:128:0,127:0:0:127:4484:-403.374,-38.2308,0	0/1:90:31,59:31:1104:59:2104:-162.537,0,-72.5779	0/1:67:39,28:39:1400:28:993:-69.5135,0,-106.13	0/1:65:32,33:32:1140:33:1176:-86.5805,0,-83.3423	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:48:19,29:19:684:29:1036:-79.1045,0,-47.4409	0/1:19:9,10:9:316:10:360:-27.0247,0,-23.0593	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:77:0,77:0:0:77:2720:-245.044,-23.1793,0	0/1:28:8,20:8:284:20:681:-53.1757,0,-17.4745	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:65:34,31:34:1220:31:1108:-80.464,0,-90.5399	1/1:94:1,93:1:36:93:3308:-294.339,-24.6985,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:84:48,36:48:1720:36:1279:-90.1259,0,-129.799	1/1:142:0,142:0:0:142:5063:-455.817,-42.7463,0	0/1:29:13,16:13:464:16:557:-41.7266,0,-33.3676	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	0/1:115:31,84:31:1104:84:2982:-233.865,0,-65.0522	1/1:138:0,138:0:0:138:4925:-443.397,-41.5421,0	0/1:47:24,23:24:864:23:820:-59.9741,0,-63.9342	0/1:42:12,30:12:428:30:1076:-84.5096,0,-26.2155	1/1:62:0,62:0:0:62:2186:-197.003,-18.6639,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:59:0,59:0:0:59:2103:-189.539,-17.7608,0	1/1:66:3,63:3:108:63:2225:-190.438,-9.79281,0	1/1:189:1,188:1:36:188:6699:-599.388,-53.2964,0	1/1:62:0,62:0:0:62:2201:-198.354,-18.6639,0	0/1:107:25,82:25:896:82:2948:-233.343,0,-48.7501	0/1:60:23,37:23:815:37:1309:-100.049,0,-55.5974	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:64:25,39:25:900:39:1395:-106.578,0,-62.0551	0/1:58:18,40:18:644:40:1427:-111.267,0,-40.8309	1/1:223:0,223:0:0:223:7941:-714.716,-67.1297,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	1/1:85:0,85:0:0:85:3029:-272.839,-25.5876,0	1/1:57:0,57:0:0:57:2007:-180.9,-17.1587,0	0/1:140:68,72:68:2431:72:2552:-187.785,0,-176.901	0/1:35:10,25:10:360:25:845:-65.8114,0,-22.2083	0/1:71:35,36:35:1243:36:1279:-94.0312,0,-90.8007	0/1:68:32,36:32:1148:36:1279:-94.9424,0,-83.1598	0/1:37:18,19:18:648:19:684:-50.7522,0,-47.5138	0/1:126:66,60:66:2340:60:2129:-153.947,0,-172.928	0/1:137:76,61:76:2715:61:2165:-153.875,0,-203.352	1/1:133:0,133:0:0:133:4750:-427.658,-40.037,0	1/1:108:0,108:0:0:108:3871:-348.584,-32.5112,0
chr07	4043572	.	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chr07	4146997	.	A	C	153157	PASS	AB=0.484167;ABP=16.281;AC=133;AF=0.722826;AN=184;AO=7430;CIGAR=1X;DP=10583;DPB=10583;DPRA=0;EPP=16007;EPPR=6773.84;GTI=0;LEN=1;MEANALT=1.03261;MQM=58.4505;MQMR=59.8556;NS=92;NUMALT=1;ODDS=1.12181;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=265202;QR=112766;RO=3150;RPL=7415;RPP=16007;RPPR=6782.48;RPR=15;RUN=1;SAF=0;SAP=16137.1;SAR=7430;SRF=1;SRP=6834.47;SRR=3149;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:20,22:20:720:22:788:-58.5581,0,-52.4846	0/1:125:76,49:76:2720:49:1751:-120.063,0,-207.407	0/1:118:54,64:54:1935:64:2279:-169.699,0,-138.901	0/1:293:147,146:147:5257:146:5188:-378.704,0,-383.974	1/1:65:0,65:0:0:65:2320:-209.047,-19.567,0	1/1:17:0,17:0:0:17:604:-54.6771,-5.11751,0	1/1:143:0,143:0:0:143:5128:-461.506,-43.0473,0	0/1:165:82,83:82:2936:83:2923:-213.441,0,-214.803	1/1:143:0,142:0:0:142:5060:-454.528,-42.7463,0	0/1:140:81,59:81:2904:59:2108:-147.469,0,-219.451	1/1:79:0,79:0:0:79:2812:-253.248,-23.7814,0	1/1:96:0,96:0:0:96:3448:-310.193,-28.8989,0	1/1:101:0,101:0:0:101:3579:-321.962,-30.404,0	0/1:68:29,39:29:1044:39:1400:-105.652,0,-73.8048	0/1:80:39,41:39:1400:41:1459:-107.462,0,-102.217	0/1:81:38,43:38:1333:43:1525:-113.065,0,-95.8782	1/1:88:0,88:0:0:88:3147:-283.152,-26.4906,0	0/1:84:50,34:50:1800:34:1215:-84.3385,0,-136.992	0/1:50:26,24:26:936:24:855:-61.9227,0,-69.5043	0/1:261:149,112:149:5352:112:3992:-280.756,0,-403.157	1/1:190:0,190:0:0:190:6779:-609.078,-57.1957,0	0/1:149:104,45:104:3716:45:1608:-100.01,0,-289.787	0/1:124:58,66:58:2076:66:2343:-173.194,0,-149.727	0/1:144:73,71:73:2624:71:2535:-184.91,0,-193.059	0/1:100:50,50:50:1800:50:1800:-131.688,0,-132.178	1/1:307:0,307:0:0:307:10955:-985.207,-92.4162,0	1/1:176:0,175:0:0:175:6240:-560.996,-52.6803,0	1/1:52:0,52:0:0:52:1864:-167.905,-15.6536,0	0/1:279:157,122:157:5588:122:4359:-308.025,0,-419.042	1/1:99:1,98:1:36:98:3483:-309.911,-26.2037,0	1/1:141:1,140:1:36:140:5007:-447.046,-38.847,0	0/1:8:1,7:1:36:7:243:-19.7983,0,-1.19003	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:176:-16.1741,-1.50515,0	0/1:7:4,3:4:144:3:108:-7.96514,0,-11.2064	0/1:274:131,143:131:4712:143:5103:-375.928,0,-341.748	0/1:267:102,165:102:3653:165:5924:-452.707,0,-248.597	0/1:71:34,37:34:1224:37:1316:-97.1646,0,-89.0921	.:.:.:.:.:.:.:.	0/1:164:83,81:83:2972:81:2903:-211.139,0,-218.326	0/1:45:18,27:18:648:27:957:-72.8975,0,-45.1055	0/1:152:93,59:93:3332:59:2086:-142.153,0,-254.341	0/1:85:47,38:47:1692:38:1355:-96.6612,0,-126.979	0/1:96:46,50:46:1648:50:1796:-132.95,0,-119.665	1/1:134:1,133:1:36:133:4751:-423.271,-36.7397,0	1/1:152:1,151:1:36:151:5393:-481.194,-42.1583,0	1/1:162:0,162:0:0:162:5778:-519.811,-48.7669,0	1/1:165:1,164:1:36:164:5879:-525.487,-46.0717,0	0/1:170:98,72:98:3515:72:2575:-180.798,0,-265.384	0/1:194:84,110:84:3016:110:3928:-294.972,0,-213.265	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:167:87,80:87:3124:80:2868:-207.943,0,-231.113	1/1:50:0,50:0:0:50:1777:-160.047,-15.0515,0	0/1:20:9,11:9:320:11:380:-28.5035,0,-23.1218	0/1:145:62,83:62:2201:83:2943:-221.192,0,-154.704	0/1:45:32,13:32:1143:13:464:-28.5512,0,-89.6323	0/1:5:3,2:3:104:2:72:-5.32966,0,-8.19766	1/1:18:0,18:0:0:18:640:-57.8425,-5.41854,0	1/1:69:0,69:0:0:69:2464:-221.992,-20.7711,0	1/1:137:0,137:0:0:137:4899:-440.887,-41.2411,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:209:0,209:0:0:209:7476:-672.127,-62.9153,0	1/1:221:2,219:2:72:219:7821:-696.622,-59.6909,0	0/1:97:41,56:41:1476:56:1980:-148.899,0,-103.919	1/1:102:0,102:0:0:102:3648:-328.097,-30.7051,0	0/1:229:118,111:118:4202:111:3964:-287.907,0,-309.078	0/1:136:89,47:89:3200:47:1688:-111.267,0,-247.282	0/1:26:16,10:16:576:10:360:-24.827,0,-44.3482	1/1:68:0,68:0:0:68:2440:-219.713,-20.47,0	0/1:104:42,61:42:1508:61:2192:-166.073,0,-104.646	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:108:0,108:0:0:108:3813:-342.617,-32.5112,0	0/1:71:42,29:42:1504:29:1044:-72.8734,0,-114.281	1/1:153:0,153:0:0:153:5453:-489.565,-46.0576,0	1/1:177:0,177:0:0:177:6324:-568.488,-53.2823,0	0/1:100:52,48:52:1856:48:1724:-125.152,0,-137.214	1/1:97:0,97:0:0:97:3460:-310.778,-29.1999,0	1/1:10:0,10:0:0:10:360:-32.7351,-3.0103,0	1/1:141:0,141:0:0:141:5025:-452.126,-42.4452,0	0/1:152:85,67:85:3048:67:2404:-170.742,0,-228.679	0/1:300:145,155:145:5179:155:5552:-409.331,0,-375.895	0/1:119:57,62:57:2044:62:2209:-163.251,0,-148.409	0/1:81:47,34:47:1668:34:1203:-84.1632,0,-126.021	1/1:149:0,149:0:0:149:5294:-476.484,-44.8535,0	0/1:210:93,117:93:3320:117:4186:-313.361,0,-235.8	1/1:63:0,63:0:0:63:2259:-203.081,-18.9649,0	1/1:90:0,90:0:0:90:3227:-290.35,-27.0927,0	1/1:80:0,80:0:0:80:2872:-258.2,-24.0824,0	0/1:45:28,17:28:1008:17:603:-41.0355,0,-77.4834	0/1:90:44,46:44:1553:46:1631:-119.894,0,-112.651	0/1:97:68,29:68:2423:29:1040:-64.686,0,-188.756	1/1:79:0,79:0:0:79:2824:-254.275,-23.7814,0	1/1:125:0,125:0:0:125:4434:-399.068,-37.6288,0
chr07	4151250	.	ACA	GCA	109069	PASS	AB=0.519534;ABP=13.5297;AC=135;AF=0.718085;AN=188;AO=4234;CIGAR=1X2M;DP=5781;DPB=6036.33;DPRA=31.3967;EPP=5.24434;EPPR=90.1105;GTI=0;LEN=1;MEANALT=1.26087;MQM=43.4865;MQMR=59.474;NS=94;NUMALT=1;ODDS=3.5052;PAIRED=0;PAIREDR=0;PAO=383;PQA=13660;PQR=0;PRO=0;QA=150597;QR=53112;RO=1521;RPL=2085;RPP=5.111;RPPR=90.1105;RPR=2149;RUN=1;SAF=1;SAP=9188.34;SAR=4233;SRF=0;SRP=3305.82;SRR=1521;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:6,13:6:216:13:463:-35.3715,0,-14.0709	0/1:46:20,25:20:670:25:883:-64.749,0,-46.7897	0/1:85:35,49:35:1215:49:1743:-129.058,0,-84.0381	0/1:126:51,74:51:1782:74:2647:-194.368,0,-122.698	1/1:30:0,29:0:0:29:1027:-90.8738,-8.72987,0	1/1:12:0,12:0:0:12:431:-38.2376,-3.61236,0	1/1:62:1,61:1:36:61:2174:-187.614,-15.0656,0	0/1:99:48,51:48:1664:51:1812:-130.072,0,-120.223	1/1:40:0,40:0:0:40:1418:-125.846,-12.0412,0	0/1:48:21,27:21:737:27:958:-69.8927,0,-52.2003	1/1:62:0,62:0:0:62:2195:-193.796,-18.6639,0	1/1:110:0,110:0:0:110:3955:-349.473,-33.1133,0	1/1:104:0,103:0:0:103:3677:-324.14,-31.0061,0	0/1:41:17,24:17:587:24:851:-63.3,0,-40.8105	0/1:88:44,42:44:1541:42:1508:-106.248,0,-112.775	0/1:60:28,32:28:979:32:1147:-83.2383,0,-70.3549	1/1:23:0,23:0:0:23:809:-72.0585,-6.92369,0	0/1:30:11,19:11:393:19:680:-51.4253,0,-26.6622	0/1:41:13,28:13:420:28:1007:-76.6976,0,-25.7664	0/1:136:72,64:72:2541:64:2273:-158.705,0,-187.969	1/1:99:1,98:1:27:98:3480:-305.116,-27.1022,0	0/1:26:17,9:17:595:9:316:-19.5195,0,-45.2549	0/1:47:18,29:18:640:29:1021:-76.0114,0,-43.7809	0/1:28:14,14:14:496:14:503:-36.1741,0,-36.5449	0/1:64:21,43:21:745:43:1526:-115.989,0,-48.1082	1/1:158:0,158:0:0:158:5638:-477.483,-47.5627,0	1/1:121:0,121:0:0:121:4343:-384.038,-36.4246,0	1/1:39:0,39:0:0:39:1373:-122.007,-11.7402,0	0/1:164:81,83:81:2831:83:2960:-206.126,0,-201.529	1/1:47:0,47:0:0:47:1679:-148.692,-14.1484,0	1/1:55:0,55:0:0:55:1928:-169.625,-16.5567,0	0/1:6:2,4:2:72:4:144:-11.2775,0,-5.03054	1/1:7:0,7:0:0:7:252:-22.688,-2.10721,0	1/1:1:0,1:0:0:1:32:-3.17344,-0.30103,0	1/1:9:0,9:0:0:9:324:-28.9962,-2.70927,0	0/1:9:7,2:7:252:2:72:-4.00936,0,-20.3197	0/1:223:107,115:107:3766:115:4075:-284.672,0,-266.611	0/1:38:17,21:17:580:21:744:-54.7628,0,-41.0362	0/1:47:23,21:23:817:21:751:-52.9801,0,-60.2602	1/1:2:0,2:0:0:2:72:-6.71863,-0.60206,0	0/1:65:25,40:25:871:40:1440:-108.198,0,-59.1151	0/1:33:13,20:13:450:20:716:-53.7979,0,-30.8838	0/1:71:40,31:40:1407:31:1111:-77.1399,0,-105.52	0/1:57:30,27:30:1020:27:933:-65.3721,0,-74.8812	0/1:77:38,39:38:1318:39:1365:-96.8229,0,-95.6505	1/1:48:0,47:0:0:47:1669:-141.43,-14.1484,0	1/1:82:0,82:0:0:82:2896:-256.379,-24.6845,0	1/1:70:0,69:0:0:69:2457:-215.914,-20.7711,0	1/1:72:0,72:0:0:72:2536:-222.847,-21.6742,0	0/1:36:24,12:24:851:12:426:-26.7954,0,-66.0725	0/1:55:26,29:26:903:29:1032:-71.2675,0,-62.0169	1/1:3:0,3:0:0:3:108:-9.85882,-0.90309,0	0/1:53:27,25:27:960:25:900:-63.9051,0,-70.687	1/1:30:0,28:0:0:28:1002:-87.0249,-8.42884,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:96:44,52:44:1543:52:1860:-135.99,0,-110.236	0/1:30:17,13:17:561:13:468:-32.5705,0,-41.7632	0/1:5:3,2:3:108:2:72:-4.85066,0,-8.56158	1/1:12:0,12:0:0:12:428:-37.6767,-3.61236,0	1/1:78:1,76:1:36:76:2714:-235.667,-19.8839,0	1/1:99:0,99:0:0:99:3525:-309.587,-29.802,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:103:1,102:1:28:102:3633:-308.725,-28.2064,0	1/1:99:0,99:0:0:99:3485:-305.593,-29.802,0	0/1:53:16,37:16:554:37:1327:-101.543,0,-34.2074	1/1:62:0,62:0:0:62:2216:-195.331,-18.6639,0	0/1:84:56,28:56:1929:28:1000:-63.1209,0,-148.559	0/1:84:49,35:49:1732:35:1239:-84.009,0,-130.849	0/1:37:18,19:18:630:19:684:-49.7942,0,-45.8833	1/1:22:0,22:0:0:22:792:-70.3688,-6.62266,0	0/1:39:22,17:22:755:17:612:-39.8347,0,-54.0545	0/1:17:5,12:5:180:12:428:-32.9398,0,-11.4056	1/1:69:1,66:1:31:66:2350:-204.686,-17.3807,0	0/1:116:31,84:31:1090:84:2977:-228.762,0,-63.4745	1/1:67:0,66:0:0:66:2349:-207.693,-19.868,0	1/1:100:0,100:0:0:100:3557:-313.342,-30.103,0	0/1:30:14,15:14:501:15:536:-38.7107,0,-36.3744	1/1:76:0,75:0:0:75:2665:-235.305,-22.5773,0	1/1:4:0,4:0:0:4:144:-13.0837,-1.20412,0	1/1:69:0,68:0:0:68:2436:-214.738,-20.47,0	0/1:77:44,33:44:1511:33:1184:-81.9491,0,-113.096	0/1:102:57,45:57:2017:45:1594:-110.298,0,-150.982	0/1:71:31,40:31:1070:40:1438:-105.007,0,-75.1955	0/1:64:31,33:31:1081:33:1169:-83.4312,0,-78.3164	1/1:50:0,50:0:0:50:1781:-157.054,-15.0515,0	0/1:157:73,84:73:2577:84:3001:-216.777,0,-184.883	1/1:32:0,32:0:0:32:1121:-99.7015,-9.63296,0	1/1:77:0,76:0:0:76:2702:-238.948,-22.8783,0	1/1:91:0,91:0:0:91:3204:-283.448,-27.3937,0	0/1:33:17,15:17:584:15:522:-36.1753,0,-42.87	0/1:77:35,42:35:1223:42:1461:-105.759,0,-87.0686	0/1:84:53,31:53:1845:31:1054:-67.8701,0,-140.975	1/1:80:0,80:0:0:80:2847:-250.7,-24.0824,0	1/1:127:0,127:0:0:127:4540:-399.259,-38.2308,0
chr07	4169787	.	T	C	114725	PASS	AB=0.5015;ABP=3.09499;AC=137;AF=0.736559;AN=186;AO=5539;CIGAR=1X;DP=7703;DPB=7703;DPRA=0;EPP=12030.8;EPPR=4693.39;GTI=0;LEN=1;MEANALT=1.04301;MQM=59.8928;MQMR=59.9903;NS=93;NUMALT=1;ODDS=0.987261;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198222;QR=77418;RO=2160;RPL=0;RPP=12030.8;RPPR=4693.39;RPR=5539;RUN=1;SAF=5539;SAP=12030.8;SAR=0;SRF=2160;SRP=4693.39;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:6,22:6:208:22:788:-62.816,0,-10.6302	0/1:91:32,59:32:1152:59:2116:-163.315,0,-76.5964	0/1:111:42,69:42:1504:69:2453:-187.609,0,-102.24	0/1:163:99,64:99:3560:64:2304:-158.544,0,-271.536	1/1:65:0,65:0:0:65:2317:-208.761,-19.567,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:125:0,124:0:0:124:4410:-396.672,-37.3277,0	0/1:106:46,59:46:1644:59:2108:-158.012,0,-116.281	1/1:130:0,130:0:0:130:4648:-418.11,-39.1339,0	0/1:115:54,61:54:1917:61:2171:-161.038,0,-138.187	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:77:0,77:0:0:77:2764:-248.811,-23.1793,0	1/1:79:0,79:0:0:79:2824:-254.356,-23.7814,0	0/1:67:46,21:46:1637:21:756:-48.1697,0,-127.448	0/1:83:27,56:27:968:56:2004:-155.63,0,-62.4519	0/1:74:45,29:45:1620:29:1040:-71.6381,0,-123.812	1/1:101:0,101:0:0:101:3592:-323.478,-30.404,0	0/1:70:38,32:38:1368:32:1144:-82.1974,0,-102.349	0/1:41:21,20:21:756:20:720:-52.7865,0,-56.025	0/1:164:100,64:100:3588:64:2288:-156.784,0,-273.757	1/1:150:0,150:0:0:150:5357:-482.262,-45.1545,0	0/1:37:26,11:26:936:11:396:-24.3503,0,-73.419	0/1:89:40,49:40:1436:49:1745:-130.542,0,-102.746	0/1:122:41,81:41:1468:81:2904:-224.825,0,-95.6904	0/1:49:20,29:20:720:29:1032:-78.443,0,-50.3783	1/1:219:0,219:0:0:219:7872:-708.389,-65.9256,0	1/1:171:0,171:0:0:171:6144:-553.056,-51.4761,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:162:82,80:82:2948:80:2861:-208.959,0,-216.786	1/1:86:1,85:1:36:85:3044:-270.429,-22.2903,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:195:93,102:93:3348:102:3656:-270.013,0,-242.835	0/1:74:34,40:34:1224:40:1432:-106.901,0,-88.1908	0/1:75:39,36:39:1389:36:1292:-93.9983,0,-102.73	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:96:41,54:41:1472:54:1928:-144.839,0,-103.818	0/1:48:27,21:27:968:21:756:-53.9178,0,-72.9879	0/1:126:48,78:48:1724:78:2792:-213.591,0,-117.516	0/1:84:47,37:47:1692:37:1332:-94.8959,0,-127.28	0/1:72:31,41:31:1093:41:1460:-110.019,0,-77.0035	1/1:81:0,81:0:0:81:2888:-260.156,-24.3834,0	1/1:83:0,83:0:0:83:2964:-266.994,-24.9855,0	1/1:124:0,124:0:0:124:4436:-399.412,-37.3277,0	1/1:112:0,112:0:0:112:4011:-361.179,-33.7154,0	0/1:89:47,42:47:1676:42:1499:-108.411,0,-124.336	0/1:187:85,102:85:3041:102:3652:-272.592,0,-217.625	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:136:64,72:64:2288:72:2569:-190.518,0,-165.242	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:95:59,36:59:2120:36:1296:-88.3461,0,-162.471	0/1:49:26,23:26:932:23:824:-59.7328,0,-69.4484	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:78:0,78:0:0:78:2793:-251.211,-23.4803,0	1/1:104:0,104:0:0:104:3724:-335.361,-31.3071,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:81:0,81:0:0:81:2885:-259.885,-24.3834,0	1/1:148:2,146:2:72:146:5256:-466.334,-37.7157,0	0/1:60:35,25:35:1260:25:892:-62.5288,0,-95.6437	1/1:52:0,52:0:0:52:1860:-167.675,-15.6536,0	0/1:128:53,75:53:1904:75:2677:-202.642,0,-133.106	0/1:82:50,32:50:1788:32:1148:-78.9454,0,-136.518	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2753	1/1:87:0,87:0:0:87:3108:-279.678,-26.1896,0	0/1:110:57,53:57:2044:53:1900:-138.164,0,-151.118	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	0/1:61:26,35:26:932:35:1260:-95.3427,0,-65.836	1/1:199:0,199:0:0:199:7132:-641.863,-59.905,0	1/1:91:0,91:0:0:91:3249:-292.627,-27.3937,0	0/1:72:39,33:39:1396:33:1184:-85.1942,0,-104.265	1/1:76:0,76:0:0:76:2712:-244.265,-22.8783,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	0/1:102:55,47:55:1957:47:1668:-119.702,0,-145.695	0/1:218:114,104:114:4080:104:3712:-268.656,0,-301.762	0/1:122:67,55:67:2408:55:1968:-140.669,0,-180.25	0/1:75:42,32:42:1508:32:1152:-81.3541,0,-113.379	1/1:94:0,94:0:0:94:3361:-302.694,-28.2968,0	0/1:138:64,74:64:2296:74:2648:-197.024,0,-165.359	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:60:0,60:0:0:60:2147:-193.339,-18.0618,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	0/1:44:25,19:25:888:19:680:-48.2838,0,-66.9928	0/1:77:45,32:45:1620:32:1140:-79.7299,0,-122.911	0/1:80:51,29:51:1824:29:1040:-69.8296,0,-140.359	1/1:42:0,42:0:0:42:1497:-135.02,-12.6433,0	1/1:102:0,102:0:0:102:3652:-328.875,-30.7051,0
chr07	4169798	.	A	G	35248.9	PASS	AB=0.491584;ABP=5.67845;AC=49;AF=0.263441;AN=186;AO=2138;CIGAR=1X;DP=7777;DPB=7777;DPRA=1.31135;EPP=4645.62;EPPR=12247.9;GTI=0;LEN=1;MEANALT=1;MQM=59.9486;MQMR=59.8867;NS=93;NUMALT=1;ODDS=0.951923;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75924;QR=201212;RO=5639;RPL=0;RPP=4645.62;RPPR=12247.9;RPR=2138;RUN=1;SAF=2138;SAP=4645.62;SAR=0;SRF=5639;SRP=12247.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:21,6:21:752:6:216:-11.6627,0,-59.8784	0/1:92:61,31:61:2173:31:1112:-72.6966,0,-168.14	0/1:110:69,41:69:2472:41:1472:-99.6628,0,-189.62	0/1:162:64,98:64:2292:98:3480:-264.644,0,-157.766	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.471	0/0:54:54,0:54:1902:0:0:0,-16.2556,-171.348	0/0:127:126,1:126:4481:1:36:0,-34.6325,-399.822	0/1:106:62,44:62:2182:44:1565:-109.23,0,-164.724	0/0:130:130,0:130:4625:0:0:0,-39.1339,-415.786	0/1:117:62,55:62:2194:55:1934:-139.112,0,-162.501	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.288	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.038	0/1:64:21,43:21:756:43:1521:-117.915,0,-49.0728	0/1:83:56,27:56:1996:27:972:-62.8124,0,-154.929	0/1:72:29,43:29:1040:43:1517:-115.145,0,-72.2402	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.712	0/1:74:35,39:35:1252:39:1388:-102.943,0,-90.7089	0/1:41:21,20:21:756:20:716:-52.4255,0,-56.025	0/1:164:63,101:63:2244:101:3601:-274.927,0,-152.827	0/0:151:151,0:151:5351:0:0:0,-45.4555,-481.715	0/1:37:12,25:12:424:25:885:-68.8281,0,-27.0856	0/1:88:49,39:49:1733:39:1388:-98.7283,0,-129.762	0/1:119:80,39:80:2876:39:1385:-89.1243,0,-223.209	0/1:49:29,20:29:1040:20:674:-46.2207,0,-79.1639	0/0:226:225,1:225:7995:1:21:0,-65.9349,-717.453	0/0:171:171,0:171:6113:0:0:0,-51.4761,-550.27	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:161:80,81:80:2830:81:2897:-212.498,0,-206.471	0/0:91:90,1:90:3224:1:36:0,-23.7955,-286.622	0/0:74:74,0:74:2628:0:0:0,-22.2762,-236.768	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:192:101,91:101:3593:91:3230:-232.496,0,-265.739	0/1:75:41,34:41:1472:34:1209:-86.5369,0,-110.199	0/1:75:36,39:36:1296:39:1385:-102.37,0,-94.3585	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:97:54,43:54:1932:43:1497:-105.818,0,-144.957	0/1:47:21,26:21:756:26:909:-67.975,0,-54.2188	0/1:126:78,48:78:2800:48:1720:-117.156,0,-214.31	0/1:84:38,46:38:1364:46:1633:-121.884,0,-97.7742	0/1:72:41,31:41:1461:31:1094:-77.0947,0,-110.102	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.963	0/0:85:85,0:85:3006:0:0:0,-25.5875,-270.77	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/0:116:116,0:116:4132:0:0:0,-34.9195,-372.066	0/1:91:42,49:42:1504:49:1737:-129.219,0,-108.261	0/1:189:103,86:103:3646:86:3050:-217.833,0,-271.45	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:135:72,63:72:2588:63:2231:-160.412,0,-191.592	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:8:7,1:7:229:1:36:-1.19004,0,-18.5213	0/1:97:38,59:38:1353:59:2096:-159.686,0,-92.8685	0/1:49:23,26:23:820:26:917:-68.0941,0,-59.372	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:79:79,0:79:2832:0:0:0,-23.7814,-254.737	0/0:109:109,0:109:3885:0:0:0,-32.8123,-349.844	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:82:81,1:81:2900:1:36:0,-21.0862,-257.637	0/0:152:150,2:150:5368:2:68:0,-39.2988,-476.758	0/1:60:25,35:25:877:35:1248:-94.5612,0,-61.1609	0/0:54:54,0:54:1920:0:0:0,-16.2556,-173.075	0/1:128:76,52:76:2713:52:1868:-129.867,0,-205.88	0/1:85:35,50:35:1260:50:1787:-135.525,0,-88.1027	0/1:36:20,16:20:716:16:576:-41.3379,0,-53.9306	0/0:88:88,0:88:3144:0:0:0,-26.4906,-282.916	0/1:110:56,54:56:1993:54:1940:-141.763,0,-146.527	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:62:36,26:36:1288:26:936:-65.8956,0,-97.5597	0/0:197:197,0:197:7012:0:0:0,-59.3029,-631.098	0/0:93:93,0:93:3287:0:0:0,-27.9958,-295.854	0/1:73:34,39:34:1220:39:1384:-102.881,0,-88.1316	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.812	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:71:71,0:71:2520:0:0:0,-21.3731,-227.041	0/1:103:47,56:47:1684:56:1970:-146.565,0,-120.841	0/1:220:106,114:106:3769:114:4019:-295.673,0,-273.183	0/1:122:56,66:56:2012:66:2357:-175.661,0,-144.627	0/1:77:35,42:35:1252:42:1493:-111.483,0,-89.8058	0/0:98:98,0:98:3505:0:0:0,-29.5009,-315.648	0/1:140:75,65:75:2692:65:2324:-167.276,0,-200.38	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.755	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:43:19,24:19:684:24:842:-63.1526,0,-48.946	0/1:77:34,43:34:1205:43:1536:-115.354,0,-85.5746	0/1:75:29,46:29:1032:46:1620:-123.509,0,-70.6139	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.932	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.667
chr07	4169825	.	T	C	296594	PASS	AB=0.39301;ABP=1163.71;AC=136;AF=0.723404;AN=188;AO=11530;CIGAR=1X;DP=18641;DPB=18641;DPRA=0;EPP=25031.4;EPPR=15427;GTI=6;LEN=1;MEANALT=1.04255;MQM=59.9522;MQMR=57.6465;NS=94;NUMALT=1;ODDS=13.4753;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=410127;QR=253954;RO=7107;RPL=5570;RPP=31.6557;RPPR=2535.52;RPR=5960;RUN=1;SAF=5571;SAP=31.3626;SAR=5959;SRF=2115;SRP=2532;SRR=4992;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:49,36:49:1752:36:1274:-89.3739,0,-131.678	0/1:307:161,146:161:5776:146:5181:-374.015,0,-426.322	0/1:308:166,142:166:5936:142:5066:-363.369,0,-440.594	0/1:515:301,214:301:10737:214:7632:-531.88,0,-806.663	1/1:150:0,150:0:0:150:5354:-481.965,-45.1545,0	1/1:123:3,119:3:108:119:4226:-370.436,-26.8979,0	1/1:262:1,261:1:36:261:9252:-828.97,-75.2716,0	0/1:366:221,145:221:7932:145:5157:-353.901,0,-601.921	1/1:193:0,193:0:0:193:6835:-614.852,-58.0988,0	0/1:287:195,92:195:6980:92:3281:-209.114,0,-541.666	1/1:130:0,130:0:0:130:4643:-418.033,-39.1339,0	1/1:130:0,130:0:0:130:4607:-414.775,-39.1339,0	1/1:152:0,152:0:0:152:5395:-485.666,-45.7566,0	0/1:165:118,47:118:4236:47:1654:-99.4734,0,-330.329	0/1:192:104,88:104:3740:88:3160:-226.826,0,-277.656	0/1:153:100,53:100:3584:53:1900:-125.22,0,-276.549	1/1:166:0,166:0:0:166:5936:-534.34,-49.971,0	0/1:165:99,66:99:3535:66:2350:-162.086,0,-268.419	0/1:115:68,47:68:2444:47:1665:-115.517,0,-185.405	0/1:401:217,184:217:7763:184:6498:-464.195,0,-577.671	1/1:216:0,216:0:0:216:7683:-691.507,-65.0225,0	0/1:96:48,48:48:1720:48:1700:-124.314,0,-126.164	0/1:195:132,62:132:4719:62:2220:-141.305,0,-365.945	0/1:326:183,143:183:6521:143:5083:-359.434,0,-488.466	0/1:119:71,48:71:2535:48:1711:-118.452,0,-192.374	1/1:467:0,467:0:0:467:16659:-1498.97,-140.581,0	1/1:341:1,340:1:36:340:12114:-1086.52,-99.053,0	1/1:84:0,84:0:0:84:2985:-268.882,-25.2865,0	0/1:489:275,214:275:9819:214:7648:-541.152,0,-735.642	1/1:213:9,204:9:324:204:7234:-621.903,-34.9094,0	1/1:176:0,176:0:0:176:6265:-563.944,-52.9813,0	0/1:25:20,5:20:720:5:172:-8.29222,0,-57.2917	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:34:19,15:19:684:15:523:-37.1634,0,-51.5734	0/1:463:260,203:260:9265:203:7181:-506.941,0,-693.813	0/1:270:178,92:178:6350:92:3284:-214.433,0,-488.999	0/1:202:134,68:134:4780:68:2388:-154.358,0,-367.43	0/1:22:14,8:14:496:8:288:-19.6447,0,-38.2942	0/1:326:173,153:173:6185:153:5431:-390.786,0,-456.785	0/1:111:75,36:75:2673:36:1266:-80.8268,0,-206.902	0/1:312:186,126:186:6644:126:4490:-310.348,0,-502.776	0/1:187:122,64:122:4372:64:2283:-149.46,0,-337.191	0/1:152:93,59:93:3273:59:2073:-141.083,0,-248.955	1/1:112:0,112:0:0:112:4024:-362.346,-33.7154,0	1/1:235:0,234:0:0:234:8296:-746.294,-70.441,0	1/1:293:1,292:1:36:292:10364:-929.082,-84.6035,0	1/1:191:0,191:0:0:191:6812:-613.152,-57.4967,0	0/1:322:196,126:196:7020:126:4499:-308.148,0,-533.989	0/1:431:259,172:259:9250:172:6117:-420.887,0,-701.947	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:369:214,155:214:7639:155:5512:-385.127,0,-575.047	1/1:72:0,72:0:0:72:2571:-231.638,-21.6742,0	0/1:26:10,16:10:360:16:537:-40.8182,0,-24.8625	0/1:316:208,108:208:7417:108:3850:-251.571,0,-571.762	0/1:140:104,36:104:3732:36:1273:-72.7277,0,-293.844	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0675	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:120:0,120:0:0:120:4271:-384.559,-36.1236,0	1/1:208:0,208:0:0:208:7410:-666.945,-62.6142,0	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.092	1/1:223:0,223:0:0:223:7934:-714.083,-67.1297,0	1/1:352:4,348:4:144:348:12437:-1105.85,-92.6489,0	0/1:191:127,64:127:4536:64:2288:-148.685,0,-349.713	1/1:168:0,168:0:0:168:5937:-534.442,-50.573,0	0/1:343:213,130:213:7620:130:4655:-315.858,0,-582.279	0/1:253:184,69:184:6586:69:2455:-145.032,0,-516.466	0/1:86:52,34:52:1859:34:1216:-83.858,0,-141.131	1/1:159:0,159:0:0:159:5662:-509.682,-47.8638,0	0/1:250:148,102:148:5312:102:3617:-250.476,0,-402.697	0/1:31:21,10:21:722:10:341:-21.6858,0,-55.9303	1/1:134:0,134:0:0:134:4716:-424.6,-40.338,0	0/1:177:107,70:107:3782:70:2520:-173.769,0,-284.476	1/1:315:0,315:0:0:315:11155:-1003.8,-94.8245,0	1/1:276:1,275:1:36:275:9803:-878.623,-79.4897,0	0/1:217:126,91:126:4508:91:3241:-226.587,0,-340.278	1/1:207:1,206:1:32:206:7387:-661.675,-59.1139,0	1/1:18:0,18:0:0:18:620:-56.1201,-5.41854,0	1/1:237:0,237:0:0:237:8450:-760.502,-71.3441,0	0/1:260:139,121:139:4984:121:4313:-310.079,0,-370.004	0/1:587:376,211:376:13424:211:7544:-502.295,0,-1029.27	0/1:264:163,101:163:5821:101:3587:-243.565,0,-443.865	0/1:177:109,68:109:3898:68:2433:-165.941,0,-297.595	1/1:162:0,162:0:0:162:5738:-516.535,-48.7669,0	0/1:315:188,127:188:6740:127:4507:-310.975,0,-511.343	1/1:90:0,90:0:0:90:3192:-287.501,-27.0927,0	1/1:112:0,112:0:0:112:3928:-353.706,-33.7154,0	1/1:108:1,107:1:32:107:3813:-340.168,-29.3119,0	0/1:118:82,36:82:2912:36:1284:-80.3419,0,-226.054	0/1:203:135,68:135:4823:68:2411:-156.138,0,-371.724	0/1:177:131,46:131:4658:46:1652:-95.6852,0,-365.797	1/1:75:1,74:1:36:74:2612:-231.729,-18.9816,0	1/1:216:0,216:0:0:216:7664:-689.797,-65.0225,0
chr07	4169833	.	CC	CT,AT	492336	PASS	AB=0.781045,0.217765;ABP=8074.61,8143.1;AC=137,51;AF=0.728723,0.271277;AN=188;AO=16337,2585;CIGAR=1M1X,2X;DP=18948;DPB=18948;DPRA=0,1.49461;EPP=35469.7,5616.27;EPPR=39.9253;GTI=9;LEN=1,2;MEANALT=1.71277,2.1;MQM=59.9495,53.3954;MQMR=60;NS=94;NUMALT=2;ODDS=1.17771;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=580950,91103;QR=560;RO=17;RPL=7665,13;RPP=137.795,5503.92;RPPR=4.1599;RPR=8672,2572;RUN=1,1;SAF=7666,13;SAP=137.26,5503.92;SAR=8671,2572;SRF=10;SRP=4.1599;SRR=7;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:89:0,70,19:0:0:70,19:2484,680:-257.378,-54.9893,-33.9172,-202.742,0,-197.023	1/2:311:0,235,76:0:0:235,76:8379,2706:-902.921,-219.91,-149.168,-683.365,0,-660.487	1/2:313:0,245,67:0:0:245,67:8661,2365:-896.979,-191.597,-117.845,-705.374,0,-685.205	1/2:527:0,413,114:0:0:413,114:14716,4042:-1526.64,-328.241,-203.915,-1198.76,0,-1164.44	1/1:156:0,156,0:0:0:156,0:5555,0:-500.063,-46.9607,0,-500.063,-46.9607,-500.063	1/1:122:0,122,0:0:0:122,0:4344,0:-391.031,-36.7257,0,-391.031,-36.7257,-391.031	1/1:272:0,270,2:0:0:270,2:9541,48:-858.4,-81.2781,0,-854.683,-77.3205,-854.081	1/2:371:0,268,103:0:0:268,103:9535,3649:-1072.8,-295.726,-215.05,-777.432,0,-746.426	1/1:197:0,197,0:0:0:197,0:6937,0:-623.77,-59.3029,0,-623.77,-59.3029,-623.77	1/2:291:0,215,76:0:0:215,76:7652,2676:-841.653,-218.018,-153.296,-623.987,0,-601.109	1/1:129:0,129,0:0:0:129,0:4592,0:-413.448,-38.8329,0,-413.448,-38.8329,-413.448	1/1:131:0,131,0:0:0:131,0:4650,0:-418.658,-39.4349,0,-418.658,-39.4349,-418.658	1/1:158:1,157,0:1:26:157,0:5558,0:-497.735,-44.9629,0,-498.036,-47.2617,-500.074	1/2:167:0,122,45:0:0:122,45:4338,1577:-480.831,-127.339,-90.6137,-353.841,0,-340.295	1/2:194:0,152,42:0:0:152,42:5423,1485:-562.625,-120.532,-74.7759,-442.445,0,-429.801	1/2:158:0,129,29:0:0:129,29:4556,1038:-455.878,-84.8623,-46.0294,-371.373,0,-362.643	1/1:165:1,164,0:1:36:164,0:5793,0:-517.889,-46.0717,0,-518.19,-49.3689,-521.127	1/2:167:0,137,30:0:0:137,30:4874,1065:-484.08,-86.865,-45.6239,-397.569,0,-388.538	1/2:115:0,90,25:0:0:90,25:3201,898:-334.276,-73.4136,-46.3209,-261.22,0,-253.694	1/2:408:3,360,44:3:86:360,44:12849,1550:-1165.48,-118.908,-17.3687,-1040.69,0,-1034.28	1/1:220:0,219,1:0:0:219,1:7766,25:-698.716,-65.9256,0,-696.768,-63.7267,-696.467	1/1:98:0,90,7:0:0:90,7:3220,252:-289.677,-27.0927,0,-269.137,-6.45045,-267.03	1/2:197:0,163,34:0:0:163,34:5760,1209:-567.875,-98.7913,-49.7234,-469.439,0,-459.204	1/2:333:0,274,59:0:0:274,59:9777,2088:-966.643,-169.646,-87.1639,-797.35,0,-779.59	1/2:120:0,105,15:0:0:105,15:3733,538:-348.24,-44.0362,-12.428,-304.561,0,-300.045	1/1:472:0,471,0:0:0:471,0:16787,0:-1510.19,-141.785,0,-1510.19,-141.785,-1510.19	1/1:350:0,350,0:0:0:350,0:12425,0:-1118.09,-105.361,0,-1118.09,-105.361,-1118.09	1/1:84:0,84,0:0:0:84,0:2992,0:-269.513,-25.2865,0,-269.513,-25.2865,-269.513	1/2:499:0,412,87:0:0:412,87:14684,3073:-1446.79,-249.87,-125.846,-1197.28,0,-1171.09	1/1:213:2,203,8:2:72:203,8:7206,260:-641.789,-55.2266,0,-621.633,-40.3808,-625.1	1/1:178:0,178,0:0:0:178,0:6342,0:-570.871,-53.5833,0,-570.871,-53.5833,-570.871	1/2:26:0,19,7:0:0:19,7:675,250:-75.4311,-20.4267,-14.7071,-55.3573,0,-53.2501	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:33:0,23,10:0:0:23,10:820,360:-96.4924,-29.6517,-22.728,-67.1988,0,-64.1885	1/2:472:0,386,86:0:0:386,86:13743,3043:-1367.17,-247.413,-131.215,-1120.11,0,-1094.23	1/2:278:0,181,97:0:0:181,97:6430,3425:-802.041,-278.093,-223.606,-524.301,0,-495.101	1/2:205:0,154,51:0:0:154,51:5467,1779:-588.331,-142.881,-96.5226,-445.796,0,-430.444	1/2:22:0,9,13:0:0:9,13:324,441:-62.4963,-36.0509,-33.3416,-26.7966,0,-22.8832	1/2:335:1,265,69:1:36:265,69:9455,2416:-962.297,-191.809,-114.974,-767.841,0,-750.008	1/2:112:0,87,25:0:0:87,25:3096,890:-324.632,-72.3093,-46.1197,-252.677,0,-245.151	1/2:323:0,247,75:0:0:247,75:8815,2640:-932.832,-214.2,-139.846,-718.733,0,-696.155	1/2:192:1,158,33:1:36:158,33:5668,1165:-553.709,-91.6882,-47.0631,-459.378,0,-452.381	1/2:153:0,122,31:0:0:122,31:4299,1068:-436.801,-86.7909,-50.0653,-350.355,0,-341.023	1/1:115:0,115,0:0:0:115,0:4098,0:-369.005,-34.6185,0,-369.005,-34.6185,-369.005	1/1:238:0,238,0:0:0:238,0:8450,0:-760.507,-71.6451,0,-760.507,-71.6451,-760.507	1/1:300:0,299,1:0:0:299,1:10615,23:-955.033,-90.008,0,-953.265,-88.0092,-952.964	1/1:193:0,192,1:0:0:192,1:6846,23:-615.979,-57.7978,0,-614.211,-55.7989,-613.91	1/2:322:0,229,93:0:0:229,93:8191,3300:-936.408,-268.498,-199.562,-668.265,0,-640.269	1/2:436:0,356,80:0:0:356,80:12706,2830:-1265.91,-230.197,-123.031,-1036.07,0,-1011.99	1/1:29:0,29,0:0:0:29,0:1025,0:-92.5607,-8.72987,0,-92.5607,-8.72987,-92.5607	1/2:371:0,287,84:0:0:287,84:10178,2991:-1071.75,-242.54,-156.145,-829.561,0,-804.274	1/1:70:0,70,0:0:0:70,0:2507,0:-225.882,-21.0721,0,-225.882,-21.0721,-225.882	1/2:26:0,20,6:0:0:20,6:701,216:-74.9632,-17.9289,-11.90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chr07	4169839	.	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chr07	4169846	.	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chr07	4245862	.	A	G	13117.5	PASS	AB=0.326692;ABP=893.415;AC=50;AF=0.265957;AN=188;AO=1121;CIGAR=1X;DP=7202;DPB=7202;DPRA=0.856031;EPP=2437.23;EPPR=12819.6;GTI=10;LEN=1;MEANALT=1.03704;MQM=59.2667;MQMR=59.9752;NS=94;NUMALT=1;ODDS=0.116075;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38741;QR=216909;RO=6077;RPL=1121;RPP=2437.23;RPPR=12819.6;RPR=0;RUN=1;SAF=0;SAP=2437.23;SAR=1121;SRF=0;SRP=13199;SRR=6077;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:26,12:26:932:12:420:-26.6949,0,-72.7597	0/1:111:70,41:70:2492:41:1385:-91.3404,0,-191.119	0/1:82:48,34:48:1724:34:1124:-76.7358,0,-130.761	0/1:140:105,35:105:3764:35:1222:-68.1094,0,-296.815	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.857	0/0:170:170,0:170:6040:0:0:0,-51.1751,-543.707	0/1:111:69,42:69:2468:42:1417:-94.3935,0,-188.96	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.607	0/1:76:60,16:60:2143:16:572:-28.9066,0,-170.259	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:68:68,0:68:2439:0:0:0,-20.47,-219.764	0/1:25:9,16:9:324:16:576:-44.6492,0,-21.9801	0/1:33:25,8:25:896:8:288:-16.3334,0,-71.0264	0/1:20:15,5:15:540:5:171:-9.70485,0,-42.9159	0/0:27:27,0:27:954:0:0:0,-8.12781,-86.174	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	0/1:17:12,5:12:424:5:176:-11.0675,0,-33.3789	0/1:162:129,33:129:4624:33:1150:-54.9808,0,-367.556	0/0:145:145,0:145:5150:0:0:0,-43.6493,-463.645	0/1:121:79,40:79:2811:40:1383:-88.6036,0,-217.066	0/1:66:39,27:39:1396:27:940:-64.9362,0,-106.071	0/1:106:67,39:67:2381:39:1343:-89.2441,0,-182.637	0/1:82:64,18:64:2265:18:627:-32.0593,0,-179.427	0/0:293:293,0:293:10468:0:0:0,-88.2018,-942.035	0/0:162:162,0:162:5795:0:0:0,-48.7669,-521.664	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/1:184:143,41:143:5072:41:1410:-71.7753,0,-401.207	0/0:87:86,1:86:3080:1:36:0,-22.5913,-273.83	0/0:127:127,0:127:4521:0:0:0,-38.2308,-407.058	0/1:5:3,2:3:104:2:68:-4.95256,0,-8.19766	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:1,3:1:27:3:96:-7.75396,0,-1.49566	0/1:91:60,31:60:2160:31:1108:-72.6088,0,-167.273	0/1:186:121,64:121:4309:64:2205:-142.589,0,-331.936	0/1:25:17,8:17:604:8:279:-17.9218,0,-47.1649	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:118:90,28:90:3224:28:936:-48.9947,0,-254.861	0/1:16:9,7:9:324:7:251:-18.1128,0,-24.6894	0/1:145:93,52:93:3324:52:1801:-118.696,0,-255.729	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	0/1:29:21,8:21:752:8:288:-17.5375,0,-59.2764	0/0:124:124,0:124:4401:0:0:0,-37.3277,-396.265	0/0:115:115,0:115:4074:0:0:0,-34.6184,-366.849	0/0:198:197,0:197:7051:0:0:0,-59.3029,-634.41	0/0:133:133,0:133:4736:0:0:0,-40.037,-426.398	0/1:68:53,15:53:1900:15:523:-26.9284,0,-150.808	0/1:135:110,25:110:3932:25:862:-37.2257,0,-313.164	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:131:61,70:61:2188:70:2359:-173.093,0,-157.751	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:64:47,17:47:1659:17:578:-33.0697,0,-130.331	0/1:51:32,19:32:1117:19:646:-43.0936,0,-85.4826	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:196:196,0:196:7010:0:0:0,-59.0019,-630.962	0/0:175:174,1:174:6206:1:36:0,-49.082,-555.039	0/1:35:27,8:27:959:8:284:-15.3673,0,-76.0893	0/0:81:81,0:81:2907:0:0:0,-24.3834,-261.864	0/1:123:75,48:75:2696:48:1695:-115.769,0,-205.856	0/1:74:37,37:37:1316:37:1291:-94.1149,0,-96.4656	0/1:6:3,3:3:108:3:104:-7.88562,0,-8.26899	0/0:104:104,0:104:3702:0:0:0,-31.3071,-333.383	0/1:50:36,14:36:1296:14:504:-30.6181,0,-101.892	0/1:14:10,4:10:360:4:140:-8.73016,0,-28.5299	0/0:121:121,0:121:4293:0:0:0,-36.4246,-386.546	0/1:42:20,22:20:716:22:745:-54.7127,0,-52.1245	0/0:178:178,0:178:6328:0:0:0,-53.5833,-569.502	0/0:166:166,0:166:5938:0:0:0,-49.971,-534.527	0/1:109:52,57:52:1850:57:1917:-139.974,0,-133.966	0/0:70:68,2:68:2432:2:72:0,-14.2354,-212.299	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:116:114,2:114:4079:2:63:0,-28.9363,-361.313	0/1:97:62,35:62:2228:35:1181:-77.3163,0,-171.584	0/1:181:147,34:147:5237:34:1190:-52.8319,0,-416.982	0/1:50:33,17:33:1188:17:612:-40.3619,0,-92.1771	0/1:35:25,10:25:891:10:360:-22.2083,0,-69.9727	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:45:29,16:29:1040:16:559:-37.0627,0,-80.368	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.359	0/0:54:54,0:54:1935:0:0:0,-16.2556,-174.426	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:20:17,3:17:612:3:108:-4.05457,0,-49.3928	0/1:21:4,17:4:144:17:604:-48.3405,0,-6.99199	0/0:114:114,0:114:4028:0:0:0,-34.3174,-362.48	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445
chr07	4245871	.	T	C	13048.7	PASS	AB=0.318342;ABP=978.128;AC=50;AF=0.265957;AN=188;AO=1091;CIGAR=1X;DP=7217;DPB=7217;DPRA=0.825498;EPP=2372.09;EPPR=13233.9;GTI=10;LEN=1;MEANALT=1.01786;MQM=59.3162;MQMR=59.9633;NS=94;NUMALT=1;ODDS=1.87521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38432;QR=218854;RO=6125;RPL=1091;RPP=2372.09;RPPR=13233.9;RPR=0;RUN=1;SAF=0;SAP=2372.09;SAR=1091;SRF=0;SRP=13303.3;SRR=6125;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:26,16:26:928:16:568:-38.8086,0,-71.195	0/1:110:73,37:73:2567:37:1279:-81.9195,0,-198.163	0/1:76:49,27:49:1745:27:948:-62.7178,0,-134.454	0/1:141:106,35:106:3784:35:1244:-69.791,0,-298.314	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.157	0/0:55:55,0:55:1964:0:0:0,-16.5566,-176.906	0/0:167:167,0:167:5973:0:0:0,-50.272,-537.675	0/1:105:68,37:68:2417:37:1283:-84.1583,0,-186.177	0/0:61:60,1:60:2136:1:36:0,-14.7646,-188.91	0/1:75:59,16:59:2116:16:572:-29.2077,0,-168.131	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:47:45,2:45:1608:2:72:0,-7.31169,-138.173	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:24:9,15:9:324:15:532:-40.9884,0,-22.2811	0/1:35:27,8:27:968:8:288:-15.7314,0,-76.9013	0/1:20:15,5:15:536:5:180:-10.5315,0,-42.5542	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/1:17:12,5:12:432:5:172:-10.7005,0,-34.1037	0/1:160:128,32:128:4557:32:1140:-54.6876,0,-362.132	0/0:147:147,0:147:5261:0:0:0,-44.2514,-473.625	0/1:127:83,44:83:2956:44:1568:-103.152,0,-228.042	0/1:70:41,29:41:1449:29:1040:-72.6588,0,-109.632	0/1:107:69,38:69:2476:38:1344:-89.028,0,-190.883	0/1:80:63,17:63:2256:17:604:-30.5975,0,-179.221	0/0:301:301,0:301:10769:0:0:0,-90.61,-968.952	0/0:161:161,0:161:5776:0:0:0,-48.4658,-519.953	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:184:147,37:147:5228:37:1310:-62.794,0,-415.258	0/0:89:88,1:88:3156:1:36:0,-23.1934,-280.666	0/0:127:127,0:127:4529:0:0:0,-38.2308,-407.749	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:1,3:1:32:3:100:-8.12632,0,-1.99519	0/1:89:60,29:60:2152:29:1040:-67.1227,0,-167.156	0/1:184:120,63:120:4281:63:2209:-143.244,0,-330.014	0/1:25:17,8:17:600:8:279:-17.9218,0,-46.8034	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:115:87,28:87:3124:28:988:-54.5872,0,-246.767	0/1:16:9,7:9:324:7:252:-18.2017,0,-24.6894	0/1:145:93,52:93:3313:52:1802:-118.791,0,-254.739	0/1:29:16,13:16:576:13:456:-32.6434,0,-43.4451	0/1:30:22,8:22:792:8:288:-17.2365,0,-62.5748	0/0:122:122,0:122:4364:0:0:0,-36.7257,-392.935	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.592	0/0:199:199,0:199:7110:0:0:0,-59.905,-639.955	0/0:135:135,0:135:4836:0:0:0,-40.639,-435.393	0/1:68:53,15:53:1900:15:536:-28.1048,0,-150.808	0/1:134:110,24:110:3944:24:851:-36.543,0,-314.542	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:126:60,66:60:2141:66:2297:-169.002,0,-155.026	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.462	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:65:48,17:48:1682:17:584:-33.3123,0,-132.096	0/1:51:33,18:33:1180:18:626:-41.3022,0,-91.1555	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.646	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:199:199,0:199:7069:0:0:0,-59.905,-636.268	0/0:177:176,1:176:6274:1:36:0,-49.684,-561.154	0/1:37:28,9:28:1004:9:320:-18.0042,0,-79.5378	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:131:82,49:82:2917:49:1730:-116.519,0,-223.329	0/1:76:39,37:39:1404:37:1303:-94.2355,0,-103.781	0/1:6:3,3:3:108:3:108:-8.25798,0,-8.26899	0/0:104:104,0:104:3717:0:0:0,-31.3071,-334.73	0/1:51:37,14:37:1332:14:491:-29.14,0,-104.83	0/1:14:11,3:11:392:3:100:-5.11602,0,-31.4056	0/0:128:128,0:128:4551:0:0:0,-38.5318,-409.731	0/1:37:19,18:19:684:18:627:-45.5986,0,-50.7522	0/0:184:184,0:184:6577:0:0:0,-55.3895,-591.898	0/0:166:166,0:166:5948:0:0:0,-49.971,-535.427	0/1:105:50,55:50:1785:55:1918:-141.27,0,-129.323	0/0:70:68,2:68:2436:2:72:0,-14.2354,-212.659	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7336	0/0:115:114,1:114:4084:1:36:0,-31.0202,-364.147	0/1:93:60,33:60:2137:33:1144:-75.1935,0,-164.6	0/1:183:148,35:148:5316:35:1244:-57.091,0,-423.484	0/1:50:33,17:33:1184:17:608:-40.0005,0,-91.8168	0/1:35:25,10:25:885:10:360:-22.2083,0,-69.4305	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:45:30,15:30:1064:15:528:-34.2934,0,-82.5253	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/1:8:7,1:7:252:1:32:-0.791073,0,-20.6207	0/1:22:19,3:19:680:3:108:-3.45251,0,-54.9065	0/1:20:4,16:4:144:16:567:-45.3116,0,-7.29302	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.155	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.374
chr07	4336918	.	G	T	62287.6	PASS	AB=0.507214;ABP=6.23724;AC=52;AF=0.276596;AN=188;AO=3635;CIGAR=1X;DP=12662;DPB=12662;DPRA=1.16711;EPP=7818.33;EPPR=19399.1;GTI=0;LEN=1;MEANALT=1.03448;MQM=59.934;MQMR=59.9925;NS=94;NUMALT=1;ODDS=0.928576;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130073;QR=322834;RO=9024;RPL=9;RPP=7818.33;RPPR=19442.3;RPR=3626;RUN=1;SAF=3635;SAP=7896.31;SAR=0;SRF=9017;SRP=19537.6;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:32,32:32:1132:32:1131:-82.8318,0,-82.9227	0/1:117:69,48:69:2476:48:1707:-118.695,0,-187.873	0/1:206:82,124:82:2923:124:4427:-336.59,0,-201.293	0/1:250:119,131:119:4272:131:4685:-346.552,0,-309.399	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	0/0:177:177,0:177:6340:0:0:0,-53.2823,-570.691	0/1:243:134,109:134:4804:109:3898:-277.863,0,-359.365	0/0:173:173,0:173:6156:0:0:0,-52.0782,-554.133	0/1:133:76,57:76:2724:57:2013:-141.402,0,-205.366	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/0:125:125,0:125:4472:0:0:0,-37.6287,-402.65	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/1:171:83,88:83:2938:88:3143:-231.619,0,-213.179	0/1:121:60,61:60:2144:61:2192:-161.121,0,-156.803	0/1:128:76,52:76:2732:52:1853:-128.516,0,-207.59	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:56:21,35:21:756:35:1256:-96.4876,0,-51.5095	0/1:46:29,17:29:1031:17:603:-40.7521,0,-79.2552	0/1:243:90,153:90:3232:153:5488:-420.749,0,-217.951	0/0:216:215,0:215:7697:0:0:0,-64.7214,-692.402	0/1:93:33,60:33:1164:60:2148:-165.592,0,-77.0684	0/1:212:107,105:107:3832:105:3767:-275.41,0,-281.258	0/1:140:72,68:72:2576:68:2443:-177.981,0,-189.945	0/1:114:42,72:42:1495:72:2560:-196.327,0,-100.526	0/0:312:312,0:312:11182:0:0:0,-93.9214,-1006.26	0/0:204:201,3:201:7190:3:108:0,-51.3349,-637.08	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:300:143,157:143:5136:157:5631:-416.6,0,-372.071	0/0:213:206,7:206:7379:7:252:0,-41.0904,-641.127	0/0:204:204,0:204:7297:0:0:0,-61.4101,-656.78	0/1:31:12,19:12:432:19:671:-51.3839,0,-29.8893	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:15:4,11:4:144:11:388:-30.7419,0,-8.79817	0/1:207:98,108:98:3498:108:3880:-287.021,0,-252.658	0/1:181:112,69:112:4015:69:2448:-166.086,0,-307.051	0/1:80:37,43:37:1300:43:1548:-115.531,0,-93.2161	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:198:106,92:106:3779:92:3299:-237.392,0,-280.706	0/1:37:14,23:14:504:23:828:-63.706,0,-34.2406	0/1:259:130,129:130:4644:129:4603:-336.467,0,-340.157	0/1:77:42,35:42:1503:35:1256:-90.166,0,-112.385	0/1:65:31,34:31:1103:34:1216:-90.1796,0,-79.8226	0/0:122:122,0:122:4363:0:0:0,-36.7257,-392.844	0/0:140:139,1:139:4956:1:36:0,-38.5459,-442.591	0/0:209:209,0:209:7479:0:0:0,-62.9153,-673.148	0/1:128:79,49:79:2822:49:1756:-119.792,0,-215.686	0/1:176:93,83:93:3324:83:2971:-214.641,0,-246.397	0/1:154:79,75:79:2840:75:2696:-196.525,0,-209.479	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:183:108,75:108:3876:75:2696:-187.795,0,-293.945	0/0:133:133,0:133:4780:0:0:0,-40.037,-430.355	0/1:32:8,24:8:288:24:860:-68.0889,0,-16.6344	0/1:173:107,66:107:3832:66:2352:-159.853,0,-292.998	0/1:70:28,42:28:1008:42:1497:-113.951,0,-69.9643	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:174:174,0:174:6206:0:0:0,-52.3792,-558.638	0/0:118:118,0:118:4218:0:0:0,-35.5215,-379.799	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/0:179:179,0:179:6401:0:0:0,-53.8844,-576.178	0/0:236:236,0:236:8450:0:0:0,-71.0431,-760.501	0/1:103:37,66:37:1319:66:2359:-181.562,0,-88.0051	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.03	0/1:302:167,135:167:5984:135:4802:-341.227,0,-447.754	0/1:242:82,160:82:2924:160:5740:-443.702,0,-190.544	0/1:82:38,44:38:1364:44:1575:-117.356,0,-98.3763	0/0:79:79,0:79:2811:0:0:0,-23.7814,-253.23	0/1:54:31,23:31:1116:23:820:-57.8669,0,-84.4961	0/1:33:10,23:10:352:23:828:-64.9101,0,-22.0842	0/0:131:131,0:131:4668:0:0:0,-39.4349,-420.281	0/1:101:42,59:42:1493:59:2118:-160.484,0,-104.259	0/0:364:364,0:364:12998:0:0:0,-109.575,-1169.63	0/0:266:265,1:265:9516:1:36:0,-76.4757,-852.795	0/1:210:94,115:94:3365:115:4123:-307.201,0,-239.789	0/0:142:141,1:141:5051:1:36:0,-39.148,-451.136	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:176:176,0:176:6284:0:0:0,-52.9813,-565.656	0/1:177:102,75:102:3624:75:2696:-189.598,0,-273.083	0/1:363:206,157:206:7355:157:5607:-395.475,0,-552.727	0/1:61:34,27:34:1224:27:972:-69.4305,0,-92.1042	0/1:120:59,61:59:2116:61:2191:-161.332,0,-154.585	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/1:162:71,91:71:2548:91:3264:-245.213,0,-180.803	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/0:95:95,0:95:3381:0:0:0,-28.5978,-304.505	0/1:107:46,61:46:1630:61:2196:-165.695,0,-114.777	0/1:202:102,100:102:3668:100:3564:-260.159,0,-269.514	0/1:98:29,69:29:1044:69:2484:-194.312,0,-64.7739	0/0:234:234,0:234:8368:0:0:0,-70.441,-753.124	0/0:162:161,1:161:5771:1:36:0,-45.1686,-515.905
chr07	4337008	.	C	T	57178	PASS	AB=0.534161;ABP=25.858;AC=133;AF=0.715054;AN=186;AO=2998;CIGAR=1X;DP=4056;DPB=4056;DPRA=22.0326;EPP=6513.08;EPPR=2300.43;GTI=2;LEN=1;MEANALT=1;MQM=41.6731;MQMR=44.345;NS=93;NUMALT=1;ODDS=1.74447;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107449;QR=37793;RO=1058;RPL=0;RPP=6513.08;RPPR=2300.43;RPR=2998;RUN=1;SAF=2998;SAP=6513.08;SAR=0;SRF=1058;SRP=2300.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:6,8:6:216:8:288:-20.9629,0,-15.1092	0/1:54:28,26:28:996:26:936:-63.9844,0,-71.3429	0/1:66:26,40:26:909:40:1436:-104.314,0,-59.8349	0/1:65:22,43:22:788:43:1544:-111.126,0,-50.3045	1/1:31:2,29:2:72:29:1038:-82.7718,-2.6133,0	1/1:16:0,16:0:0:16:565:-49.5068,-4.81648,0	1/1:37:0,37:0:0:37:1332:-113.648,-11.1381,0	0/1:35:16,19:16:572:19:680:-48.8413,0,-39.6052	1/1:49:0,49:0:0:49:1757:-152.539,-14.7505,0	0/1:31:19,12:19:684:12:417:-26.5478,0,-51.7011	1/1:33:0,33:0:0:33:1184:-99.6386,-9.93399,0	1/1:38:1,37:1:36:37:1332:-111.494,-8.88043,0	1/1:42:0,42:0:0:42:1504:-129.329,-12.6433,0	0/1:43:27,16:27:972:16:576:-37.0553,0,-72.6154	0/1:35:17,18:17:604:18:648:-45.0059,0,-43.1774	0/1:36:16,20:16:564:20:720:-52.2502,0,-38.9123	1/1:29:0,29:0:0:29:1044:-88.6604,-8.72987,0	0/1:40:26,14:26:936:14:504:-32.0333,0,-70.354	0/1:18:8,10:8:288:10:360:-26.0895,0,-19.8637	0/1:138:50,88:50:1788:88:3160:-229.673,0,-116.844	1/1:58:0,58:0:0:58:2066:-178.865,-17.4597,0	0/1:49:23,26:23:828:26:924:-62.7085,0,-58.985	0/1:41:20,21:20:712:21:756:-52.7952,0,-51.3686	0/1:25:16,9:16:560:9:320:-20.3178,0,-41.718	0/1:37:15,22:15:536:22:792:-57.7538,0,-36.2781	1/1:151:0,151:0:0:151:5420:-458.066,-45.4555,0	1/1:87:0,87:0:0:87:3101:-265.583,-26.1896,0	1/1:14:0,14:0:0:14:500:-43.4226,-4.21442,0	0/1:95:40,55:40:1440:55:1962:-139.253,0,-98.5839	1/1:41:0,41:0:0:41:1476:-124.825,-12.3422,0	1/1:62:1,61:1:36:61:2196:-180.8,-16.5773,0	0/1:4:1,3:1:36:3:108:-8.49855,0,-2.332	1/1:9:0,9:0:0:9:324:-27.8321,-2.70927,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.46061,-0.60206,0	0/1:8:5,3:5:180:3:108:-7.17938,0,-13.7042	0/1:103:58,45:58:2072:45:1616:-107.141,0,-154.048	0/1:76:22,54:22:792:54:1940:-144.544,0,-47.3888	0/1:21:9,12:9:320:12:432:-31.2682,0,-21.3404	1/1:1:0,1:0:0:1:36:-2.6486,-0.30103,0	0/1:45:15,30:15:540:30:1072:-78.9679,0,-34.2517	0/1:29:13,16:13:464:16:576:-41.2633,0,-32.2166	0/1:51:23,28:23:824:28:996:-71.1778,0,-57.302	0/1:20:8,12:8:288:12:432:-31.912,0,-19.1224	0/1:38:22,16:22:788:16:572:-38.057,0,-59.088	1/1:54:0,54:0:0:54:1936:-158.915,-16.2556,0	1/1:55:0,55:0:0:55:1980:-170.267,-16.5567,0	1/1:63:0,63:0:0:63:2226:-186.886,-18.9649,0	0/1:59:33,26:33:1180:26:936:-62.0827,0,-86.1518	0/1:29:12,17:12:428:17:612:-41.7122,0,-29.5028	0/1:56:33,23:33:1184:23:813:-50.7208,0,-89.2837	1/1:5:0,5:0:0:5:180:-15.5769,-1.50515,0	0/1:89:42,47:42:1492:47:1684:-118.289,0,-103.111	1/1:24:0,24:0:0:24:864:-71.215,-7.22472,0	0/1:9:8,1:8:284:1:36:-0.636877,0,-22.3816	0/1:53:14,39:14:504:39:1396:-104.853,0,-28.8521	0/1:23:10,13:10:356:13:468:-33.6644,0,-25.118	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.41867	1/1:5:0,5:0:0:5:180:-16.1402,-1.50515,0	1/1:32:0,32:0:0:32:1148:-98.2729,-9.63296,0	1/1:87:0,87:0:0:87:3132:-265.022,-26.1896,0	0/1:4:2,2:2:72:2:72:-4.61349,0,-5.53588	1/1:61:1,60:1:36:60:2160:-180.78,-15.4601,0	1/1:93:0,93:0:0:93:3348:-282.498,-27.9958,0	0/1:24:8,16:8:288:16:576:-42.9609,0,-18.589	1/1:23:0,23:0:0:23:813:-68.9594,-6.92369,0	0/1:72:32,40:32:1144:40:1432:-100.538,0,-79.9493	0/1:58:32,26:32:1129:26:936:-63.1989,0,-82.9118	0/1:18:11,7:11:387:7:242:-14.4411,0,-29.1399	1/1:28:0,28:0:0:28:1004:-86.9319,-8.42884,0	0/1:60:27,33:27:964:33:1170:-81.5743,0,-67.8158	0/1:12:7,5:7:252:5:180:-12.4615,0,-19.1628	1/1:63:0,63:0:0:63:2268:-196.801,-18.9649,0	0/1:38:21,17:21:756:17:608:-41.7868,0,-55.0406	1/1:72:0,72:0:0:72:2580:-221.515,-21.6742,0	1/1:92:0,92:0:0:92:3304:-280.675,-27.6948,0	0/1:41:10,31:10:356:31:1108:-84.0474,0,-18.5299	1/1:31:0,31:0:0:31:1112:-96.1549,-9.33193,0	1/1:3:0,3:0:0:3:108:-9.51379,-0.90309,0	1/1:37:0,37:0:0:37:1311:-113.376,-11.1381,0	0/1:49:24,25:24:845:25:896:-62.7327,0,-59.6321	0/1:89:46,43:46:1648:43:1540:-104.07,0,-119.464	0/1:51:22,29:22:788:29:1036:-74.0122,0,-54.8213	0/1:31:13,18:13:468:18:648:-46.3684,0,-32.6598	1/1:33:0,33:0:0:33:1173:-100.909,-9.93399,0	0/1:82:35,47:35:1247:47:1692:-119.74,0,-86.2356	1/1:30:0,30:0:0:30:1076:-93.4618,-9.0309,0	1/1:51:0,51:0:0:51:1828:-157.702,-15.3525,0	1/1:43:0,43:0:0:43:1535:-131.835,-12.9443,0	0/1:22:15,7:15:540:7:252:-14.9864,0,-41.3666	0/1:31:18,13:18:640:13:464:-30.6122,0,-47.2671	0/1:37:24,13:24:860:13:464:-28.4525,0,-64.5644	1/1:59:1,58:1:36:58:2084:-174.684,-14.3372,0	1/1:56:0,56:0:0:56:2016:-173.7,-16.8577,0
chr07	4337186	.	G	A	80109	PASS	AB=0.503977;ABP=3.44211;AC=133;AF=0.715054;AN=186;AO=3926;CIGAR=1X;DP=5502;DPB=5502;DPRA=8.53261;EPP=8519.53;EPPR=3420.91;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9944;MQMR=59.9962;NS=93;NUMALT=1;ODDS=0.674516;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139655;QR=55840;RO=1574;RPL=1;RPP=8519.53;RPPR=3420.91;RPR=3925;RUN=1;SAF=0;SAP=8528.21;SAR=3926;SRF=0;SRP=3420.91;SRR=1574;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:12,7:12:419:7:248:-16.9446,0,-32.3231	0/1:113:71,42:71:2544:42:1508:-101.998,0,-195.194	0/1:77:35,42:35:1256:42:1490:-111.214,0,-90.166	0/1:122:62,60:62:2209:60:2131:-155.332,0,-162.348	1/1:38:0,38:0:0:38:1355:-122.25,-11.4391,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:65:0,65:0:0:65:2280:-205.459,-19.567,0	0/1:101:42,59:42:1490:59:2090:-157.965,0,-103.989	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:81:49,32:49:1732:32:1131:-77.7143,0,-131.779	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	1/1:38:0,37:0:0:37:1324:-119.141,-11.1381,0	1/1:39:0,39:0:0:39:1388:-125.218,-11.7402,0	0/1:43:22,21:22:788:21:744:-54.34,0,-58.3005	0/1:27:14,13:14:496:13:468:-34.3318,0,-36.8465	0/1:37:22,15:22:784:15:527:-36.6221,0,-59.7458	1/1:42:0,42:0:0:42:1489:-134.303,-12.6433,0	0/1:31:13,18:13:460:18:632:-47.8748,0,-32.4034	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	0/1:155:82,73:82:2918:73:2599:-187.498,0,-216.195	1/1:76:0,76:0:0:76:2715:-244.593,-22.8783,0	0/1:104:59,45:59:2099:45:1599:-112.892,0,-157.872	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/1:109:58,51:58:2068:51:1809:-130.277,0,-153.579	0/1:42:16,26:16:563:26:923:-70.7435,0,-38.3559	1/1:165:0,165:0:0:165:5880:-529.313,-49.67,0	1/1:96:1,95:1:36:95:3393:-301.986,-25.3006,0	1/1:18:0,18:0:0:18:633:-57.2959,-5.41854,0	0/1:134:59,75:59:2086:75:2671:-200.298,0,-147.671	1/1:92:0,92:0:0:92:3262:-293.8,-27.6948,0	1/1:63:0,63:0:0:63:2239:-201.773,-18.9649,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:103:54,49:54:1920:49:1729:-124.888,0,-142.071	0/1:116:56,60:56:1964:60:2147:-158.577,0,-142.114	0/1:39:22,17:22:773:17:612:-43.6733,0,-58.1493	1/1:2:0,2:0:0:2:64:-6.0781,-0.60206,0	0/1:78:32,46:32:1135:46:1634:-123.867,0,-78.9777	0/1:24:12,12:12:424:12:432:-31.9965,0,-31.2717	0/1:78:39,39:39:1396:39:1391:-102.008,0,-102.454	0/1:31:22,9:22:775:9:316:-19.4469,0,-60.7393	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:73:0,73:0:0:73:2598:-234.068,-21.9752,0	1/1:130:0,130:0:0:130:4600:-414.166,-39.1339,0	0/1:72:27,45:27:968:45:1576:-120.453,0,-65.7632	0/1:79:43,36:43:1525:36:1292:-92.8024,0,-113.76	0/1:134:60,74:60:2126:74:2618:-195.529,0,-151.269	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:101:43,58:43:1525:58:2075:-156.616,0,-107.137	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:80:28,51:28:1000:51:1803:-138.41,0,-66.1743	0/1:28:13,15:13:459:15:532:-39.7842,0,-33.2152	0/1:12:7,5:7:248:5:176:-12.5727,0,-19.0518	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:44:0,44:0:0:44:1526:-137.628,-13.2453,0	1/1:81:0,81:0:0:81:2884:-259.798,-24.3834,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:120:0,120:0:0:120:4284:-385.736,-36.1236,0	1/1:172:3,169:3:99:169:5990:-529.973,-42.5406,0	0/1:51:21,30:21:726:30:1068:-81.0795,0,-50.306	1/1:70:1,69:1:36:69:2484:-220.214,-17.4738,0	0/1:119:57,62:57:1979:62:2220:-164.242,0,-142.557	0/1:50:35,15:35:1252:15:532:-33.1616,0,-97.9336	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:89:1,88:1:36:88:3135:-278.777,-23.1934,0	0/1:62:29,33:29:1044:33:1174:-87.3035,0,-75.6109	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	1/1:78:3,75:3:108:75:2641:-227.67,-13.4052,0	0/1:29:16,13:16:572:13:468:-33.7298,0,-43.0836	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:107:0,107:0:0:107:3813:-343.368,-32.2102,0	0/1:80:41,39:41:1460:39:1400:-102.217,0,-107.614	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:78:0,78:0:0:78:2779:-250.35,-23.4803,0	0/1:87:34,53:34:1196:53:1873:-142.658,0,-81.753	0/1:100:47,53:47:1663:53:1888:-140.095,0,-119.854	0/1:69:31,38:31:1103:38:1364:-102.29,0,-78.8087	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0491	1/1:33:0,33:0:0:33:1162:-104.885,-9.93399,0	0/1:65:29,36:29:1024:36:1287:-96.5667,0,-72.9056	1/1:34:0,34:0:0:34:1202:-108.486,-10.235,0	1/1:49:0,49:0:0:49:1747:-157.514,-14.7505,0	1/1:46:0,46:0:0:46:1643:-148.158,-13.8474,0	0/1:28:18,10:18:635:10:360:-24.3155,0,-49.0481	0/1:53:25,28:25:875:28:996:-74.0003,0,-63.1115	0/1:37:27,10:27:946:10:352:-20.8801,0,-74.3148	1/1:73:0,73:0:0:73:2587:-233.077,-21.9752,0	1/1:50:0,50:0:0:50:1771:-159.672,-15.0515,0
chr07	4337216	.	A	C	25890.2	PASS	AB=0.489442;ABP=6.08239;AC=52;AF=0.27957;AN=186;AO=1558;CIGAR=1X;DP=5567;DPB=5567;DPRA=1.20475;EPP=3368.81;EPPR=8600.13;GTI=1;LEN=1;MEANALT=1.05455;MQM=60;MQMR=59.9945;NS=93;NUMALT=1;ODDS=0.108951;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55665;QR=143576;RO=4003;RPL=1556;RPP=3368.81;RPPR=8600.13;RPR=2;RUN=1;SAF=0;SAP=3386.16;SAR=1558;SRF=0;SRP=8695.41;SRR=4003;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:112:40,72:40:1432:72:2560:-196.933,0,-95.4622	0/1:79:43,36:43:1540:36:1277:-91.4497,0,-115.112	0/1:121:59,62:59:2103:62:2212:-162.92,0,-153.114	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:103:60,43:60:2160:43:1540:-107.887,0,-163.661	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/1:79:31,48:31:1116:48:1720:-131.304,0,-76.9703	0/0:31:30,0:30:1076:0:0:0,-9.0309,-96.7931	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/1:44:22,22:22:788:22:792:-58.3604,0,-57.9995	0/1:29:15,14:15:531:14:504:-36.9682,0,-39.392	0/1:38:16,22:16:572:22:792:-60.1665,0,-40.3743	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:32:19,13:19:676:13:468:-32.8267,0,-51.535	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:158:77,81:77:2755:81:2912:-214.752,0,-200.629	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/1:105:48,57:48:1724:57:2035:-151.813,0,-123.837	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:109:51,58:51:1836:58:2076:-154.298,0,-132.708	0/1:42:27,15:27:972:15:521:-34.5731,0,-75.1546	0/0:170:170,0:170:6108:0:0:0,-51.1751,-549.818	0/0:97:96,1:96:3443:1:36:0,-25.6016,-306.483	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:135:76,59:76:2732:59:2108:-149.35,0,-205.483	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:103:51,52:51:1836:52:1857:-136.402,0,-134.515	0/1:120:64,56:64:2295:56:1993:-143.519,0,-170.687	0/1:38:18,20:18:644:20:720:-53.6896,0,-46.8515	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/1:80:46,34:46:1656:34:1216:-85.6642,0,-125.246	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:79:41,38:41:1472:38:1368:-99.6395,0,-108.995	0/1:30:9,21:9:324:21:756:-59.3363,0,-20.475	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:75:75,0:75:2683:0:0:0,-22.5772,-241.714	0/0:134:134,0:134:4816:0:0:0,-40.338,-433.593	0/1:71:44,27:44:1580:27:972:-66.4248,0,-121.118	0/1:79:36,43:36:1292:43:1527:-113.942,0,-92.8024	0/1:134:74,60:74:2651:60:2152:-153.609,0,-198.497	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:102:59,43:59:2111:43:1527:-107.017,0,-159.553	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:81:52,29:52:1855:29:1028:-68.4496,0,-142.846	0/1:30:16,14:16:576:14:500:-36.3053,0,-43.1441	0/1:12:5,7:5:180:7:244:-18.6871,0,-12.9397	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.895	0/0:178:175,3:175:6270:3:104:0,-43.8805,-554.689	0/1:50:30,20:30:1080:20:699:-48.181,0,-82.4618	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:122:66,55:66:2368:55:1946:-138.629,0,-176.594	0/1:49:15,34:15:540:34:1203:-93.8237,0,-34.1861	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:90:89,1:89:3169:1:36:0,-23.4944,-281.835	0/1:67:38,29:38:1368:29:1040:-73.7454,0,-103.252	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:78:78,0:78:2795:0:0:0,-23.4803,-251.599	0/1:30:13,17:13:468:17:608:-46.0211,0,-33.4287	0/0:76:75,0:75:2696:0:0:0,-22.5772,-242.524	0/0:110:109,0:109:3903:0:0:0,-32.8123,-351.103	0/1:82:41,41:41:1476:41:1472:-108.092,0,-108.452	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/1:88:54,34:54:1944:34:1224:-83.9764,0,-148.745	0/1:101:53,48:53:1895:48:1704:-123.241,0,-140.423	0/1:69:39,29:39:1404:29:1040:-73.0845,0,-105.829	0/1:25:10,15:10:360:15:540:-41.4108,0,-25.2186	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/1:62:34,28:34:1224:28:1008:-72.3725,0,-91.8032	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:28:10,18:10:360:18:644:-49.8618,0,-24.3155	0/1:53:27,25:27:964:25:896:-64.947,0,-71.0635	0/1:35:10,25:10:356:25:888:-69.703,0,-21.8452	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282
chr07	4413378	.	CC	CT	21424	PASS	AB=0.473511;ABP=19.691;AC=53;AF=0.281915;AN=188;AO=1304;CIGAR=1M1X;DP=5308;DPB=5308;DPRA=1.00978;EPP=2799.97;EPPR=8623.81;GTI=2;LEN=1;MEANALT=1.10526;MQM=59.9939;MQMR=60;NS=94;NUMALT=1;ODDS=1.42633;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46667;QR=139299;RO=3990;RPL=4;RPP=2799.97;RPPR=8606.49;RPR=1300;RUN=1;SAF=0;SAP=2834.61;SAR=1304;SRF=2;SRP=8649.82;SRR=3988;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:39:22,17:22:785:17:608:-43.3119,0,-59.234	0/1:126:82,43:82:2890:43:1540:-100.905,0,-222.348	0/1:80:36,44:36:1252:44:1572:-117.689,0,-88.8954	0/0:38:37,0:37:1308:0:0:0,-11.1381,-117.757	0/0:7:7,0:7:250:0:0:0,-2.10721,-22.8467	0/0:27:27,0:27:965:0:0:0,-8.12781,-87.167	0/1:71:36,35:36:1252:35:1260:-92.3324,0,-91.6066	0/0:41:41,0:41:1415:0:0:0,-12.3422,-127.641	0/1:32:18,14:18:620:14:504:-36.0651,0,-46.4878	0/0:56:56,0:56:1971:0:0:0,-16.8577,-177.664	0/0:108:108,0:108:3796:0:0:0,-32.5112,-341.839	0/0:59:59,0:59:2053:0:0:0,-17.7608,-185.04	0/1:34:19,15:19:656:15:536:-38.3398,0,-49.1259	0/1:85:43,42:43:1504:42:1493:-109.075,0,-110.061	0/1:54:26,28:26:901:28:1008:-74.7807,0,-65.1447	0/0:43:42,0:42:1463:0:0:0,-12.6433,-131.601	0/1:26:14,12:14:498:12:432:-31.3944,0,-37.3288	0/1:33:11,22:11:390:22:788:-61.3108,0,-25.505	0/1:56:35,20:35:1232:20:711:-47.504,0,-94.3726	0/0:109:109,0:109:3792:0:0:0,-32.8123,-341.477	0/1:81:39,42:39:1355:42:1489:-109.92,0,-97.8607	0/1:35:16,19:16:565:19:684:-51.3543,0,-40.6435	0/1:40:26,14:26:908:14:500:-33.295,0,-69.9916	0/1:32:18,14:18:626:14:504:-36.0651,0,-47.0296	0/0:137:137,0:137:4805:0:0:0,-41.2411,-432.607	0/0:101:101,0:101:3587:0:0:0,-30.404,-323.037	0/0:41:41,0:41:1422:0:0:0,-12.3422,-128.271	0/1:107:54,53:54:1874:53:1900:-139.068,0,-136.722	0/0:36:35,1:35:1224:1:36:0,-7.2388,-106.863	0/0:45:45,0:45:1614:0:0:0,-13.5463,-145.55	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:15:15,0:15:501:0:0:0,-4.51545,-45.4061	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1413	0/0:19:19,0:19:656:0:0:0,-5.71957,-59.3602	0/1:15:10,5:10:320:5:180:-12.0366,0,-24.5939	0/1:164:88,76:88:3058:76:2729:-196.483,0,-226.079	0/1:41:25,15:25:885:15:540:-36.5355,0,-67.5668	0/1:58:33,25:33:1155:25:891:-63.049,0,-86.7952	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:27:9,18:9:320:18:633:-49.1673,0,-21.0148	0/1:35:11,24:11:385:24:864:-67.5465,0,-24.4481	0/1:91:43,48:43:1514:48:1716:-127.332,0,-109.158	0/1:57:29,28:29:1018:28:994:-72.6141,0,-74.7706	0/1:75:38,37:38:1282:37:1328:-97.245,0,-93.0922	0/0:54:54,0:54:1901:0:0:0,-16.2556,-171.366	0/0:73:73,0:73:2529:0:0:0,-21.9752,-227.857	0/0:113:112,1:112:3905:1:36:0,-30.4181,-348.044	0/1:29:13,16:13:435:16:572:-43.0836,0,-30.7387	0/1:88:47,40:47:1659:40:1436:-102.988,0,-123.047	0/1:32:20,12:20:699:12:432:-29.5882,0,-53.5991	0/0:11:11,0:11:380:0:0:0,-3.31133,-34.5307	0/0:58:58,0:58:2041:0:0:0,-17.4597,-183.96	0/0:20:20,0:20:700:0:0:0,-6.0206,-63.3214	0/1:8:4,4:4:122:4:144:-10.9054,0,-8.87332	0/1:49:32,17:32:1115:17:593:-38.9451,0,-85.9039	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99375	0/0:7:7,0:7:250:0:0:0,-2.10721,-22.8467	0/0:41:40,0:40:1407:0:0:0,-12.0412,-126.566	0/0:96:95,1:95:3359:1:36:0,-25.3006,-298.93	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.4989	0/0:171:169,1:169:5870:1:36:0,-47.9366,-524.817	0/0:76:74,2:74:2611:2:72:0,-16.0416,-228.4	0/1:30:25,5:25:894:5:180:-7.52116,0,-71.7494	0/0:68:68,0:68:2368:0:0:0,-20.47,-213.376	0/1:76:46,30:46:1626:30:1076:-74.2746,0,-123.749	0/1:54:22,32:22:769:32:1148:-87.3742,0,-53.2735	0/1:48:28,20:28:948:20:720:-50.6793,0,-71.1727	0/0:41:41,0:41:1444:0:0:0,-12.3422,-130.254	0/1:44:26,18:26:912:18:648:-45.4066,0,-69.1484	0/1:14:7,7:7:228:7:252:-18.8145,0,-16.6237	0/0:61:61,0:61:2062:0:0:0,-18.3628,-185.842	0/1:45:29,13:29:1014:13:464:-29.095,0,-78.567	0/0:58:57,0:57:2011:0:0:0,-17.1587,-180.901	0/0:103:103,0:103:3602:0:0:0,-31.0061,-324.386	0/1:41:24,17:24:847:17:612:-43.0712,0,-64.2059	0/0:124:123,0:123:4271:0:0:0,-37.0267,-384.21	0/0:18:18,0:18:611:0:0:0,-5.41854,-55.3068	0/0:75:74,0:74:2591:0:0:0,-22.2762,-233.078	0/1:72:39,33:39:1356:33:1146:-81.7667,0,-100.66	0/1:78:36,42:36:1261:42:1504:-112.174,0,-90.3091	0/1:52:26,26:26:923:26:936:-68.9059,0,-67.7337	0/1:70:36,34:36:1266:34:1216:-88.6745,0,-93.1696	0/0:56:56,0:56:1942:0:0:0,-16.8577,-175.051	0/1:142:75,67:75:2636:67:2400:-173.51,0,-194.74	0/0:35:35,0:35:1209:0:0:0,-10.536,-109.109	0/0:60:60,0:60:2045:0:0:0,-18.0618,-184.314	0/0:69:69,0:69:2405:0:0:0,-20.7711,-216.704	0/1:38:24,14:24:836:14:504:-34.259,0,-64.1156	0/1:119:55,64:55:1886:64:2300:-171.438,0,-134.188	0/1:80:21,59:21:735:59:2116:-166.626,0,-42.3881	0/0:94:94,0:94:3280:0:0:0,-28.2968,-295.419	0/0:96:96,0:96:3322:0:0:0,-28.8989,-299.196
chr07	4427716	.	T	C	168053	PASS	AB=0.50448;ABP=4.21653;AC=135;AF=0.725806;AN=186;AO=9174;CIGAR=1X;DP=12611;DPB=12611;DPRA=68.5272;EPP=19924.1;EPPR=7462.02;GTI=1;LEN=1;MEANALT=1.02174;MQM=37.0871;MQMR=59.3904;NS=93;NUMALT=1;ODDS=0.562826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=327155;QR=122287;RO=3435;RPL=9174;RPP=19924.1;RPPR=7462.02;RPR=0;RUN=1;SAF=0;SAP=19924.1;SAR=9174;SRF=0;SRP=7462.02;SRR=3435;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:21,26:21:737:26:913:-60.0803,0,-52.4931	0/1:252:142,110:142:5088:110:3933:-239.355,0,-380.557	0/1:193:91,102:91:3256:102:3644:-232.326,0,-234.886	0/1:302:141,161:141:4998:161:5715:-395.631,0,-358.038	1/1:117:0,117:0:0:117:4175:-346.4,-35.2205,0	1/1:99:0,99:0:0:99:3527:-280.524,-29.802,0	1/1:180:0,180:0:0:180:6448:-544.266,-54.1854,0	0/1:252:124,128:124:4424:128:4547:-289.19,0,-321.796	1/1:142:0,142:0:0:142:5052:-404.492,-42.7463,0	0/1:112:59,52:59:2108:52:1839:-122.682,0,-155.82	1/1:88:0,88:0:0:88:3156:-266.823,-26.4906,0	1/1:91:0,91:0:0:91:3253:-258.999,-27.3937,0	1/1:84:0,84:0:0:84:3012:-238.029,-25.2865,0	0/1:102:49,53:49:1756:53:1846:-121.649,0,-127.614	0/1:74:35,39:35:1243:39:1394:-95.1287,0,-89.8917	0/1:54:31,23:31:1108:23:820:-50.7825,0,-83.5694	1/1:83:0,83:0:0:83:2973:-238.862,-24.9855,0	0/1:66:29,37:29:1040:37:1324:-87.939,0,-73.8479	0/1:67:34,33:34:1224:33:1184:-75.2708,0,-90.298	0/1:266:137,129:137:4869:129:4591:-308.712,0,-358.1	1/1:174:0,174:0:0:174:6195:-513.016,-52.3792,0	0/1:98:69,29:69:2440:29:1044:-60.6016,0,-188.276	0/1:162:77,85:77:2730:85:3013:-208.643,0,-197.129	0/1:221:102,119:102:3649:119:4208:-281.877,0,-261.925	0/1:140:63,77:63:2233:77:2749:-187.083,0,-159.06	1/1:445:0,445:0:0:445:15862:-1365.94,-133.958,0	1/1:272:0,272:0:0:272:9688:-801.855,-81.8802,0	1/1:44:0,44:0:0:44:1565:-130.309,-13.2453,0	0/1:337:152,185:152:5420:185:6612:-467.821,0,-385.954	1/1:203:3,200:3:108:200:7134:-575.796,-51.0339,0	1/1:158:0,158:0:0:158:5660:-475.784,-47.5627,0	0/1:3:1,2:1:36:2:72:-5.45459,0,-2.69518	1/1:15:0,15:0:0:15:536:-45.1763,-4.51545,0	1/1:8:0,8:0:0:8:288:-23.5852,-2.40824,0	1/1:3:0,3:0:0:3:108:-9.08924,-0.90309,0	0/1:9:4,5:4:140:5:180:-12.2231,0,-10.2353	0/1:229:115,114:115:4132:114:4073:-280.718,0,-302.976	0/1:226:116,110:116:4129:110:3918:-253.348,0,-303.741	0/1:78:34,44:34:1220:44:1568:-102.377,0,-86.6265	1/1:5:0,5:0:0:5:180:-15.3923,-1.50515,0	0/1:278:133,145:133:4729:145:5204:-345.419,0,-341.746	0/1:41:29,12:29:1031:12:432:-23.5767,0,-80.7512	0/1:253:115,138:115:4101:138:4902:-330.107,0,-292.884	0/1:88:44,44:44:1561:44:1576:-106.784,0,-114.282	0/1:72:41,31:41:1464:31:1107:-72.3884,0,-109.996	1/1:158:0,158:0:0:158:5634:-487.018,-47.5627,0	1/1:209:0,209:0:0:209:7452:-601.384,-62.9153,0	1/1:225:0,225:0:0:225:8022:-680.868,-67.7318,0	0/1:162:85,77:85:3021:77:2760:-187.11,0,-223.287	0/1:173:90,83:90:3193:83:2968:-200.55,0,-235.427	0/1:286:143,143:143:5046:143:5083:-353.006,0,-368.184	1/1:7:0,7:0:0:7:252:-21.911,-2.10721,0	1/1:174:0,174:0:0:174:6217:-497.556,-52.3792,0	1/1:108:0,108:0:0:108:3861:-333.146,-32.5112,0	0/1:6:1,5:1:32:5:180:-13.1262,0,-1.39313	0/1:238:112,126:112:3973:126:4493:-300.787,0,-286.025	0/1:68:22,46:22:788:46:1637:-118.04,0,-50.7701	.:.:.:.:.:.:.:.	1/1:22:0,22:0:0:22:788:-68.4779,-6.62266,0	1/1:153:0,153:0:0:153:5434:-452.246,-46.0576,0	1/1:136:0,136:0:0:136:4831:-410.817,-40.9401,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:232:0,232:0:0:232:8279:-715.504,-69.839,0	1/1:262:1,261:1:32:261:9306:-780.538,-75.6705,0	0/1:96:48,48:48:1704:48:1724:-113.932,0,-124.745	1/1:126:0,126:0:0:126:4467:-378.025,-37.9298,0	0/1:274:125,149:125:4435:149:5310:-368.168,0,-316.04	0/1:181:127,54:127:4525:54:1940:-110.755,0,-352.859	0/1:53:23,30:23:813:30:1064:-72.3626,0,-57.4933	1/1:116:0,116:0:0:116:4140:-331.762,-34.9195,0	0/1:124:54,70:54:1940:70:2516:-179.995,0,-137.503	0/1:26:13,13:13:464:13:464:-31.8068,0,-33.7772	1/1:149:0,149:0:0:149:5340:-430.362,-44.8535,0	0/1:86:45,41:45:1585:41:1468:-90.9518,0,-117.038	1/1:333:0,333:0:0:333:11867:-973.078,-100.243,0	1/1:171:0,171:0:0:171:6117:-513.325,-51.4761,0	0/1:150:70,79:70:2500:79:2787:-180.29,0,-179.958	1/1:95:0,95:0:0:95:3380:-272.129,-28.5979,0	1/1:6:0,6:0:0:6:216:-16.9672,-1.80618,0	1/1:150:0,150:0:0:150:5347:-440,-45.1545,0	0/1:156:68,88:68:2406:88:3107:-201.448,0,-169.69	0/1:285:140,145:140:4958:145:5154:-347.84,0,-360.563	0/1:125:53,72:53:1896:72:2565:-177.186,0,-133.217	0/1:71:34,37:34:1220:37:1332:-91.8528,0,-88.7255	1/1:111:0,111:0:0:111:3965:-337.265,-33.4143,0	0/1:147:74,73:74:2622:73:2616:-176.454,0,-191.967	1/1:45:0,45:0:0:45:1593:-128.453,-13.5464,0	1/1:83:0,83:0:0:83:2972:-239.8,-24.9855,0	1/1:77:0,77:0:0:77:2753:-220.968,-23.1793,0	0/1:44:24,20:24:860:20:720:-46.3833,0,-64.3419	0/1:90:42,48:42:1508:48:1707:-112.784,0,-108.877	0/1:57:46,11:46:1648:11:396:-16.7418,0,-131.437	1/1:188:2,186:2:72:186:6642:-556.767,-49.7569,0	1/1:142:0,142:0:0:142:5069:-427.477,-42.7463,0
chr07	4453868	.	T	C	46919.7	PASS	AB=0.409229;ABP=167.397;AC=134;AF=0.712766;AN=188;AO=2625;CIGAR=1X;DP=3993;DPB=3993;DPRA=0;EPP=5703.13;EPPR=2964.9;GTI=0;LEN=1;MEANALT=1.04255;MQM=37.411;MQMR=51.3028;NS=94;NUMALT=1;ODDS=0.180309;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93672;QR=48894;RO=1364;RPL=2625;RPP=5703.13;RPPR=2964.9;RPR=0;RUN=1;SAF=0;SAP=5703.13;SAR=2625;SRF=0;SRP=2964.9;SRR=1364;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:22,15:22:788:15:540:-32.0216,0,-59.4281	0/1:34:12,22:12:432:22:769:-52.8533,0,-28.7735	0/1:88:53,35:53:1896:35:1256:-74.5533,0,-142.822	0/1:103:53,49:53:1904:49:1756:-118.584,0,-139.662	0/1:9:1,8:1:36:8:288:-21.7176,0,-0.877212	1/1:10:0,10:0:0:10:360:-28.4854,-3.0103,0	1/1:41:0,41:0:0:41:1472:-125.589,-12.3422,0	0/1:63:44,19:44:1572:19:684:-36.869,0,-121.753	1/1:50:0,50:0:0:50:1800:-145.349,-15.0515,0	0/1:20:10,10:10:360:10:348:-23.306,0,-26.6613	1/1:19:0,19:0:0:19:676:-58.1664,-5.71957,0	0/1:41:23,18:23:828:18:640:-40.0971,0,-62.0853	1/1:35:0,35:0:0:35:1256:-102.214,-10.5361,0	0/1:25:16,9:16:576:9:324:-18.9402,0,-43.5606	0/1:17:9,8:9:324:8:284:-19.5987,0,-24.1792	0/1:30:14,16:14:504:16:572:-39.205,0,-36.2994	1/1:5:0,5:0:0:5:180:-14.9323,-1.50515,0	0/1:15:9,6:9:324:6:216:-13.0236,0,-24.8482	0/1:13:2,11:2:72:11:392:-28.0337,0,-2.88627	0/1:97:71,26:71:2548:26:920:-48.5701,0,-199.592	1/1:73:0,73:0:0:73:2590:-214.664,-21.9752,0	0/1:90:72,18:72:2577:18:648:-29.5592,0,-204.623	0/1:76:49,27:49:1745:27:972:-60.7393,0,-133.823	0/1:26:12,14:12:432:14:474:-32.0638,0,-30.8455	0/1:50:29,21:29:1040:21:737:-45.244,0,-78.5709	1/1:174:3,171:3:104:171:6030:-511.494,-42.791,0	1/1:82:0,82:0:0:82:2944:-242.814,-24.6845,0	1/1:8:0,8:0:0:8:288:-24.4269,-2.40824,0	0/1:125:67,58:67:2385:58:2069:-140.303,0,-176.443	1/1:66:1,65:1:36:65:2325:-189.103,-16.2815,0	1/1:40:0,40:0:0:40:1440:-122.92,-12.0412,0	0/1:6:1,5:1:36:5:180:-13.5861,0,-1.7803	1/1:8:0,8:0:0:8:288:-23.22,-2.40824,0	1/1:5:0,5:0:0:5:180:-14.8196,-1.50515,0	1/1:10:0,10:0:0:10:356:-29.3376,-3.0103,0	0/1:16:14,2:14:485:2:72:-1.35122,0,-38.8514	0/1:89:52,37:52:1864:37:1324:-87.8837,0,-140.643	0/1:81:52,29:52:1868:29:1040:-62.5186,0,-143.085	0/1:18:10,8:10:360:8:284:-17.9005,0,-27.1482	0/1:6:3,3:3:108:3:108:-7.56303,0,-8.23597	0/1:40:18,22:18:648:22:788:-54.1262,0,-46.3522	0/1:9:4,5:4:144:5:180:-12.683,0,-10.5607	0/1:63:41,22:41:1472:22:773:-45.9321,0,-112.847	0/1:22:10,12:10:360:12:428:-29.6792,0,-26.0655	0/1:20:10,10:10:356:10:360:-24.6602,0,-26.302	1/1:55:0,55:0:0:55:1968:-168.918,-16.5567,0	1/1:22:0,22:0:0:22:783:-63.8015,-6.62266,0	1/1:99:0,98:0:0:98:3478:-296.224,-29.5009,0	0/1:16:7,9:7:252:9:324:-23.2571,0,-18.1641	0/1:39:26,13:26:936:13:468:-27.1811,0,-72.3952	0/1:66:33,33:33:1169:33:1180:-83.2568,0,-85.3562	1/1:4:0,4:0:0:4:144:-12.6673,-1.20412,0	1/1:59:0,59:0:0:59:2124:-171.363,-17.7608,0	1/1:20:0,19:0:0:19:684:-59.5199,-5.71957,0	0/1:9:6,3:6:216:3:108:-6.37998,0,-16.6691	0/1:59:35,24:35:1256:24:849:-51.3293,0,-94.5858	0/1:21:9,12:9:324:12:424:-29.9968,0,-23.0472	0/1:2:1,1:1:36:1:36:-2.87864,0,-2.99251	1/1:30:0,30:0:0:30:1080:-94.0838,-9.0309,0	1/1:63:0,63:0:0:63:2252:-188.704,-18.9649,0	1/1:73:0,73:0:0:73:2614:-221.749,-21.9752,0	0/1:6:2,4:2:72:4:144:-9.42739,0,-5.01752	1/1:62:0,62:0:0:62:2224:-192.133,-18.6639,0	1/1:73:0,73:0:0:73:2590:-218.904,-21.9752,0	0/1:25:18,7:18:648:7:237:-12.5572,0,-50.7163	1/1:31:0,31:0:0:31:1116:-95.8608,-9.33193,0	0/1:55:35,20:35:1260:20:705:-43.008,0,-96.3932	0/1:78:53,25:53:1908:25:900:-52.8287,0,-147.794	0/1:11:7,4:7:252:4:129:-7.90684,0,-19.6422	1/1:33:0,33:0:0:33:1188:-96.7355,-9.93399,0	0/1:25:15,10:15:540:10:360:-24.1486,0,-41.2548	0/1:36:20,16:20:705:16:576:-38.8051,0,-52.8132	1/1:62:0,62:0:0:62:2190:-175.386,-18.6639,0	0/1:50:31,19:31:1112:19:684:-40.4981,0,-84.4656	1/1:75:0,75:0:0:75:2673:-221.759,-22.5773,0	1/1:40:0,39:0:0:39:1404:-119.203,-11.7402,0	0/1:58:36,22:36:1292:22:792:-47.2926,0,-98.2217	1/1:43:2,41:2:72:41:1461:-112.184,-6.14463,0	1/1:17:0,17:0:0:17:612:-49.6798,-5.11751,0	1/1:25:2,23:2:68:23:820:-59.4068,-1.08375,0	0/1:48:30,18:30:1076:18:644:-37.3154,0,-80.4802	0/1:149:93,56:93:3340:56:1999:-123.173,0,-255.061	0/1:45:24,21:24:864:21:744:-49.9524,0,-64.2313	0/1:19:8,11:8:288:11:396:-28.446,0,-20.4978	1/1:13:0,13:0:0:13:468:-40.5555,-3.91339,0	0/1:51:28,23:28:1008:23:824:-55.5483,0,-75.2441	1/1:17:0,17:0:0:17:597:-48.1643,-5.11751,0	1/1:34:0,34:0:0:34:1211:-97.9442,-10.235,0	1/1:35:0,35:0:0:35:1256:-101.331,-10.5361,0	0/1:16:10,6:10:360:6:216:-13.5873,0,-27.8205	0/1:54:28,26:28:1008:26:928:-61.6445,0,-74.126	0/1:30:18,12:18:648:12:432:-28.2864,0,-49.3484	1/1:55:0,55:0:0:55:1953:-167.305,-16.5567,0	1/1:30:0,30:0:0:30:1072:-92.233,-9.0309,0
chr07	4460300	.	CGAC	TGAT,TGAC	221891	PASS	AB=0.484498,0.510642;ABP=15.4652,8.87986;AC=134,54;AF=0.712766,0.287234;AN=188;AO=7375,3060;CIGAR=1X2M1X,1X3M;DP=10479;DPB=10479.5;DPRA=56.328,1.10368;EPP=15844.4,6561.14;EPPR=0;GTI=1;LEN=4,1;MEANALT=2.04301,2.48333;MQM=59.9397,59.9967;MQMR=0;NS=94;NUMALT=2;ODDS=1.84475;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=68,0;PQR=0;PRO=0;QA=260907,109353;QR=0;RO=0;RPL=20,10;RPP=15844.4,6561.14;RPPR=0;RPR=7355,3050;RUN=1,1;SAF=7375,3060;SAP=16017.6,6647.72;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:28:0,17,11:0:0:17,11:605,388:-81.2551,-31.946,-26.8285,-49.6629,0,-46.3515	1/2:224:0,118,104:0:0:118,104:4158,3686:-638.845,-300.314,-264.793,-338.563,0,-307.256	1/2:130:0,80,50:0:0:80,50:2855,1796:-379.619,-146.871,-122.788,-233.106,0,-218.055	1/2:229:0,107,122:0:0:107,122:3771,4363:-663.145,-356.118,-323.908,-307.381,0,-270.656	1/1:97:0,97,0:0:0:97,0:3455,0:-311.163,-29.1999,0,-311.163,-29.1999,-311.163	1/1:54:0,54,0:0:0:54,0:1900,0:-171.274,-16.2556,0,-171.274,-16.2556,-171.274	1/1:94:0,94,0:0:0:94,0:3300,0:-297.222,-28.2968,0,-297.222,-28.2968,-297.222	1/2:189:0,95,94:0:0:95,94:3350,3347:-545.919,-273.151,-244.553,-273.122,0,-244.825	1/1:125:0,125,0:0:0:125,0:4438,0:-399.593,-37.6288,0,-399.593,-37.6288,-399.593	1/2:134:0,70,64:0:0:70,64:2451,2280:-385.596,-186.196,-165.124,-199.752,0,-180.486	1/1:90:0,88,0:0:0:88,0:3119,0:-280.577,-26.4906,0,-280.577,-26.4906,-280.577	1/2:98:0,49,49:0:0:49,49:1716,1760:-283.551,-143.933,-129.183,-139.972,0,-125.222	1/1:101:0,100,0:0:0:100,0:3547,0:-319.08,-30.103,0,-319.08,-30.103,-319.08	1/2:127:0,57,68:0:0:57,68:2029,2438:-364.27,-198.904,-181.745,-165.421,0,-144.951	1/2:111:0,41,70:0:0:41,70:1463,2500:-323.232,-204.181,-191.839,-119.407,0,-98.335	1/2:92:0,47,45:0:0:47,45:1682,1612:-268.984,-131.824,-117.675,-137.518,0,-123.972	1/1:116:0,112,1:0:0:112,1:3957,36:-355.95,-33.7154,0,-353.013,-30.7746,-352.712	1/2:90:0,39,49:0:0:39,49:1395,1743:-255.825,-142.072,-130.332,-113.778,0,-99.0272	1/2:52:0,23,29:0:0:23,29:828,1034:-152.206,-84.6436,-77.7199,-67.9204,0,-59.1906	1/2:189:0,99,90:0:0:99,90:3522,3223:-550.23,-263.199,-233.397,-287.389,0,-260.296	1/1:117:0,116,1:0:0:116,1:4085,36:-367.48,-34.9195,0,-364.543,-31.6222,-364.242	1/2:75:0,25,50:0:0:25,50:887,1788:-218.418,-146.151,-138.625,-72.6225,0,-57.571	1/2:78:0,39,39:0:0:39,39:1376,1392:-225.882,-113.839,-102.099,-112.398,0,-100.658	1/2:112:0,67,45:0:0:67,45:2365,1597:-323.058,-130.472,-110.303,-192.94,0,-179.394	1/2:78:0,48,28:0:0:48,28:1714,1000:-221.344,-81.6016,-67.1521,-139.814,0,-131.385	1/1:288:0,288,0:0:0:288,0:10186,0:-916.68,-86.6966,0,-916.68,-86.6966,-916.68	1/1:219:0,219,0:0:0:219,0:7732,0:-695.862,-65.9256,0,-695.862,-65.9256,-695.862	1/1:53:0,53,0:0:0:53,0:1895,0:-170.828,-15.9546,0,-170.828,-15.9546,-170.828	1/2:228:0,105,121:0:0:105,121:3742,4305:-655.869,-350.853,-319.245,-305.022,0,-268.598	1/1:155:0,148,5:0:0:148,5:5211,180:-468.811,-44.5524,0,-454.124,-29.7726,-452.618	1/1:97:0,97,0:0:0:97,0:3454,0:-311.074,-29.1999,0,-311.074,-29.1999,-311.074	1/2:9:0,7,2:0:0:7,2:252,72:-26.7966,-6.23466,-4.12745,-20.9217,0,-20.3197	1/1:16:0,16,0:0:0:16,0:556,0:-50.3653,-4.81648,0,-50.3653,-4.81648,-50.3653	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:8:0,1,7:0:0:1,7:35,252:-23.7682,-20.9217,-20.6207,-3.1976,0,-1.09039	1/2:331:0,162,167:0:0:162,167:5772,5974:-957.621,-487.147,-438.38,-470.484,0,-420.212	1/2:266:0,137,129:0:0:137,129:4793,4622:-767.246,-377.309,-336.068,-390.292,0,-351.459	1/2:109:0,47,61:0:0:47,61:1658,2176:-312.46,-177.462,-163.314,-135.07,0,-116.707	1/2:4:0,1,3:0:0:1,3:33,108:-11.8328,-9.17208,-8.87105,-2.9981,0,-2.09501	1/2:195:0,112,77:0:0:112,77:3991,2768:-551.163,-225.854,-192.139,-325.34,0,-302.161	1/2:36:0,13,23:0:0:13,23:461,815:-104.305,-66.7471,-62.8337,-37.9124,0,-30.9887	1/2:135:0,63,72:0:0:63,72:2194,2576:-388.822,-210.415,-191.451,-178.76,0,-157.085	1/2:137:0,70,67:0:0:70,67:2473,2386:-396.212,-194.828,-173.755,-201.739,0,-181.57	1/2:117:0,65,50:0:0:65,50:2293,1788:-332.528,-145.82,-126.253,-186.732,0,-171.681	1/1:88:0,88,0:0:0:88,0:3090,0:-278.329,-26.4906,0,-278.329,-26.4906,-278.329	1/1:166:0,164,1:0:0:164,1:5798,36:-521.579,-49.3689,0,-518.642,-46.4315,-518.341	1/1:189:0,188,0:0:0:188,0:6644,0:-597.793,-56.5936,0,-597.793,-56.5936,-597.793	1/2:137:0,60,77:0:0:60,77:2085,2759:-394.874,-225.372,-207.31,-169.854,0,-146.675	1/2:163:0,73,90:0:0:73,90:2588,3211:-472.959,-262.12,-240.145,-211.194,0,-184.101	1/2:127:0,79,48:0:0:79,48:2804,1711:-368.251,-139.826,-116.044,-228.781,0,-214.331	1/1:5:0,5,0:0:0:5,0:173,0:-15.9093,-1.50515,0,-15.9093,-1.50515,-15.9093	1/1:241:0,240,0:0:0:240,0:8462,0:-761.286,-72.2472,0,-761.286,-72.2472,-761.286	1/1:28:0,27,0:0:0:27,0:959,0:-86.3433,-8.12781,0,-86.3433,-8.12781,-86.3433	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:113:0,46,65:0:0:46,65:1625,2328:-322.227,-189.892,-176.045,-132.3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chr07	4470516	.	T	C	46837.2	PASS	AB=0.515652;ABP=14.0904;AC=53;AF=0.281915;AN=188;AO=2699;CIGAR=1X;DP=9057;DPB=9057;DPRA=1.21463;EPP=5614.63;EPPR=13042.4;GTI=2;LEN=1;MEANALT=1.05172;MQM=59.5317;MQMR=59.9288;NS=94;NUMALT=1;ODDS=0.312175;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96048;QR=223232;RO=6352;RPL=2672;RPP=5631.64;RPPR=13152.5;RPR=27;RUN=1;SAF=2;SAP=5846.46;SAR=2697;SRF=13;SRP=13683.5;SRR=6339;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:9,13:9:316:13:468:-35.837,0,-22.1562	0/1:157:72,85:72:2529:85:3024:-225.017,0,-180.531	0/1:151:74,77:74:2609:77:2739:-201.281,0,-189.603	0/1:195:106,89:106:3719:89:3171:-226.897,0,-276.217	0/0:49:49,0:49:1728:0:0:0,-14.7505,-155.805	0/0:56:56,0:56:1941:0:0:0,-16.8577,-174.965	0/0:180:178,2:178:6261:2:72:0,-47.3487,-556.753	0/1:151:65,86:65:2299:86:3058:-229.912,0,-160.432	0/0:88:88,0:88:3079:0:0:0,-26.4906,-277.342	0/1:152:68,84:68:2388:84:2990:-223.542,0,-169.423	0/0:71:71,0:71:2505:0:0:0,-21.3731,-225.702	0/1:87:30,57:30:1056:57:2018:-155.668,0,-69.1613	0/0:106:106,0:106:3726:0:0:0,-31.9092,-334.593	0/1:73:31,42:31:1092:42:1474:-110.927,0,-76.6144	0/1:69:37,32:37:1308:32:1148:-82.8588,0,-97.2458	0/1:65:32,33:32:1124:33:1180:-86.9076,0,-81.901	0/0:73:73,0:73:2523:0:0:0,-21.9752,-227.321	0/1:82:33,49:33:1160:49:1739:-132.096,0,-79.9443	0/1:68:26,42:26:901:42:1476:-112.621,0,-60.9322	0/1:138:72,66:72:2524:66:2355:-170.662,0,-185.786	0/0:146:146,0:146:5156:0:0:0,-43.9504,-464.093	0/1:63:24,39:24:852:39:1387:-106.16,0,-58.0355	0/1:106:58,48:58:1998:48:1697:-121.083,0,-148.182	0/1:83:55,28:55:1952:28:996:-64.9675,0,-150.97	0/1:66:34,32:34:1212:32:1140:-83.0256,0,-89.5183	0/0:264:264,0:264:9269:0:0:0,-79.4719,-833.895	0/0:169:168,0:168:5869:0:0:0,-50.573,-528.015	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/1:266:139,125:139:4881:125:4470:-322.657,0,-359.603	0/0:87:85,2:85:2980:2:72:0,-19.3529,-261.599	0/0:126:126,0:126:4448:0:0:0,-37.9298,-400.498	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:5:1,4:1:32:4:144:-11.8001,0,-1.69416	0/1:236:106,130:106:3698:130:4629:-345.708,0,-261.967	0/1:71:37,34:37:1308:34:1203:-87.163,0,-96.6393	0/1:110:53,57:53:1879:57:2034:-150.206,0,-136.275	0/1:5:1,4:1:36:4:144:-11.8037,0,-2.09312	0/1:160:78,82:78:2753:82:2919:-214.773,0,-199.848	0/1:64:30,34:30:1064:34:1215:-90.3898,0,-76.8057	0/1:97:46,51:46:1620:51:1813:-134.233,0,-116.889	0/1:154:67,87:67:2343:87:3098:-232.675,0,-164.772	0/1:81:42,39:42:1484:39:1400:-101.916,0,-109.471	0/0:114:114,0:114:4017:0:0:0,-34.3174,-361.723	0/0:97:97,0:97:3372:0:0:0,-29.1999,-303.694	0/0:132:132,0:132:4685:0:0:0,-39.736,-421.808	0/1:134:60,74:60:2092:74:2617:-195.267,0,-148.213	0/1:294:181,113:181:6351:113:4006:-272.212,0,-483.189	0/1:165:87,78:87:3049:78:2757:-198.7,0,-224.973	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:139:138,1:138:4896:1:32:0,-38.6443,-437.598	0/0:45:45,0:45:1552:0:0:0,-13.5463,-139.971	0/1:6:1,5:1:36:5:180:-14.7376,0,-1.79209	0/1:112:55,57:55:1912:57:2018:-147.987,0,-138.643	0/1:68:39,29:39:1349:29:1035:-72.9746,0,-101.236	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:82:82,0:82:2879:0:0:0,-24.6845,-259.35	0/0:108:107,1:107:3785:1:36:0,-28.913,-337.253	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:140:140,0:140:4914:0:0:0,-42.1442,-442.419	0/0:178:175,3:175:6154:3:108:0,-43.5106,-543.885	0/1:72:49,23:49:1716:23:824:-52.6791,0,-133.048	0/0:67:67,0:67:2345:0:0:0,-20.169,-211.309	0/1:146:70,75:70:2446:75:2684:-197.742,0,-176.382	0/1:96:28,68:28:980:68:2413:-188.513,0,-59.614	0/1:44:24,20:24:828:20:720:-51.8779,0,-61.5879	0/0:109:109,0:109:3864:0:0:0,-32.8123,-347.951	0/1:81:31,50:31:1076:50:1783:-136.268,0,-72.7647	0/1:26:7,19:7:248:19:684:-54.0276,0,-14.8374	0/0:93:93,0:93:3269:0:0:0,-27.9958,-294.238	0/1:87:44,43:44:1521:43:1532:-111.967,0,-110.99	0/0:184:184,0:184:6474:0:0:0,-55.3895,-582.758	0/0:166:166,0:166:5849:0:0:0,-49.971,-526.528	0/1:80:35,45:35:1229:45:1605:-120.637,0,-86.8293	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:88:87,0:87:3068:0:0:0,-26.1896,-276.072	0/1:131:69,62:69:2424:62:2207:-159.443,0,-178.983	0/1:145:81,64:81:2826:64:2296:-163.169,0,-210.929	0/1:105:48,57:48:1696:57:2034:-151.635,0,-121.318	0/1:65:29,36:29:1028:36:1288:-96.6425,0,-73.2661	0/0:124:124,0:124:4395:0:0:0,-37.3277,-395.727	0/1:142:66,76:66:2333:76:2678:-198.456,0,-167.48	0/0:51:51,0:51:1762:0:0:0,-15.3525,-158.862	0/0:113:113,0:113:3984:0:0:0,-34.0164,-358.757	0/0:82:82,0:82:2908:0:0:0,-24.6845,-261.949	0/1:52:30,22:30:1059:22:788:-55.5866,0,-79.9669	0/1:68:31,36:31:1092:36:1284:-95.2592,0,-78.061	0/1:106:25,81:25:860:81:2878:-227.339,0,-45.8052	0/0:110:110,0:110:3877:0:0:0,-33.1133,-349.129	0/0:93:90,3:90:3155:3:108:0,-17.9206,-274.105
chr07	4475903	.	C	T	56729.6	PASS	AB=0.46467;ABP=26.1791;AC=136;AF=0.723404;AN=188;AO=2730;CIGAR=1X;DP=3880;DPB=3880;DPRA=0;EPP=5818.75;EPPR=2456.96;GTI=0;LEN=1;MEANALT=1;MQM=59.9685;MQMR=59.9757;NS=94;NUMALT=1;ODDS=1.66056;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97508;QR=41152;RO=1150;RPL=13;RPP=5818.75;RPPR=2456.96;RPR=2717;RUN=1;SAF=2730;SAP=5931.13;SAR=0;SRF=1150;SRP=2500.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:21,21:21:752:21:752:-55.363,0,-55.363	0/1:35:22,13:22:788:13:468:-31.9236,0,-60.7087	0/1:61:37,24:37:1307:24:864:-59.7197,0,-99.5679	0/1:77:41,36:41:1464:36:1292:-93.4045,0,-108.877	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:49:1,48:1:36:48:1716:-151.119,-11.1522,0	0/1:65:36,29:36:1288:29:1040:-74.3474,0,-96.6566	1/1:76:0,76:0:0:76:2716:-244.683,-22.8783,0	0/1:28:17,11:17:600:11:396:-27.5539,0,-45.8948	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:43:16,27:16:576:27:964:-74.1325,0,-39.2307	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:34:21,13:21:756:13:464:-31.8625,0,-58.1322	0/1:27:17,10:17:612:10:360:-24.6165,0,-47.2856	0/1:21:8,13:8:288:13:453:-34.778,0,-19.9458	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	1/1:75:1,74:1:36:74:2602:-230.824,-18.979,0	0/1:64:47,17:47:1671:17:612:-36.1475,0,-131.406	0/1:60:23,37:23:828:37:1326:-101.58,0,-56.7823	0/1:55:32,23:32:1148:23:824:-57.8982,0,-87.0699	0/1:65:28,37:28:1004:37:1328:-100.255,0,-71.1089	1/1:144:0,144:0:0:144:5141:-462.795,-43.3483,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:92:60,32:60:2148:32:1137:-74.9422,0,-165.892	1/1:84:1,83:1:36:83:2949:-262.045,-21.6882,0	1/1:33:0,33:0:0:33:1180:-106.505,-9.93399,0	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:76:30,46:30:1072:46:1656:-126.45,0,-73.9142	0/1:78:35,43:35:1252:43:1544:-115.773,0,-89.5047	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:36:22,14:22:784:14:504:-34.861,0,-60.0468	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:82:48,34:48:1704:34:1212:-84.7019,0,-128.959	0/1:21:5,16:5:176:16:563:-44.6775,0,-9.86339	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	1/1:91:0,91:0:0:91:3260:-293.609,-27.3937,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:71:0,71:0:0:71:2521:-227.141,-21.3731,0	0/1:64:31,33:31:1112:33:1188:-87.9627,0,-81.1254	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/1:64:32,32:32:1152:32:1140:-83.6433,0,-84.7242	1/1:12:0,12:0:0:12:405:-36.773,-3.61236,0	1/1:55:0,55:0:0:55:1965:-177.123,-16.5567,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:58:30,28:30:1072:28:1004:-73.2161,0,-79.3327	0/1:57:36,21:36:1296:21:716:-47.5953,0,-99.7852	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:18:0,18:0:0:18:642:-58.1097,-5.41854,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:76:1,75:1:36:75:2692:-238.926,-19.28,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:106:0,106:0:0:106:3774:-339.86,-31.9092,0	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:68:39,29:39:1388:29:1028:-72.363,0,-104.749	0/1:70:56,14:56:2008:14:504:-24.626,0,-159.921	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:34:17,17:17:608:17:604:-44.4556,0,-44.817	0/1:15:9,6:9:309:6:216:-15.2751,0,-23.6253	1/1:76:2,74:2:68:74:2628:-230.307,-16.4206,0	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	1/1:106:0,106:0:0:106:3812:-343.276,-31.9092,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:84:50,34:50:1800:34:1212:-84.0998,0,-136.996	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:32:0,32:0:0:32:1132:-102.186,-9.63296,0	0/1:42:29,13:29:1044:13:468:-29.8164,0,-81.6315	0/1:86:46,40:46:1637:40:1417:-101.937,0,-121.728	0/1:32:15,17:15:532:17:608:-45.4191,0,-38.5801	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:35:15,20:15:540:20:700:-52.7813,0,-38.4005	1/1:24:0,24:0:0:24:862:-77.9023,-7.22472,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:30:0,30:0:0:30:1061:-95.7994,-9.0309,0	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:63:33,30:33:1184:30:1080:-78.5484,0,-87.9034	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:31:0,31:0:0:31:1074:-96.964,-9.33193,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0
chr07	4475934	.	A	G	18821.7	PASS	AB=0.527281;ABP=16.7541;AC=52;AF=0.276596;AN=188;AO=1125;CIGAR=1X;DP=3872;DPB=3872;DPRA=1.11981;EPP=2445.92;EPPR=5965.87;GTI=0;LEN=1;MEANALT=1.01786;MQM=59.9662;MQMR=59.9916;NS=94;NUMALT=1;ODDS=1.59941;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40081;QR=98383;RO=2746;RPL=1125;RPP=2445.92;RPPR=5965.87;RPR=0;RUN=1;SAF=1125;SAP=2445.92;SAR=0;SRF=2746;SRP=5965.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:21,20:21:756:20:712:-52.0644,0,-56.025	0/1:35:14,21:14:504:21:748:-57.1092,0,-35.162	0/1:60:24,36:24:860:36:1266:-96.1793,0,-59.66	0/1:77:37,39:37:1332:39:1392:-102.487,0,-97.0902	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:51:50,1:50:1792:1:36:0,-11.7543,-157.964	0/1:68:30,38:30:1080:38:1348:-101.15,0,-77.0432	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/1:28:12,16:12:428:16:568:-43.0092,0,-30.43	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:42:27,15:27:968:15:531:-35.4786,0,-74.7941	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:31:12,19:12:428:19:684:-52.5584,0,-29.5269	0/1:28:10,18:10:360:18:598:-45.7024,0,-24.3155	0/1:22:14,8:14:500:8:288:-19.6447,0,-38.7135	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:31:15,16:15:540:16:572:-42.4815,0,-39.6046	0/0:75:74,1:74:2652:1:36:0,-18.979,-235.314	0/1:64:17,47:17:612:47:1680:-132.217,0,-36.1475	0/1:60:36,24:36:1281:24:856:-59.2993,0,-97.5295	0/1:55:23,32:23:828:32:1144:-86.7129,0,-58.2875	0/1:64:37,27:37:1328:27:968:-68.1714,0,-100.556	0/0:146:146,0:146:5231:0:0:0,-43.9504,-470.927	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:92:33,59:33:1180:59:2107:-162.204,0,-78.8133	0/0:84:83,1:83:2968:1:32:0,-22.0872,-264.154	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:73:45,28:45:1620:28:1004:-68.7007,0,-124.115	0/1:80:44,36:44:1580:36:1283:-91.6902,0,-118.409	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:35:15,20:15:540:20:720:-54.5927,0,-38.4005	0/1:20:11,9:11:392:9:324:-23.4853,0,-29.5995	0/1:82:34,48:34:1220:48:1728:-131.121,0,-85.4223	0/1:21:16,5:16:576:5:180:-10.2304,0,-45.8534	0/1:25:13,12:13:464:12:428:-31.2453,0,-34.5718	0/0:92:92,0:92:3269:0:0:0,-27.6948,-294.402	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:72:72,0:72:2577:0:0:0,-21.6742,-232.177	0/1:63:33,30:33:1184:30:1064:-77.1068,0,-87.9034	0/1:26:15,11:15:540:11:392:-27.7933,0,-41.1098	0/1:65:32,33:32:1152:33:1182:-87.121,0,-84.4232	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:10:8,2:8:288:2:63:-2.97285,0,-23.2571	0/1:62:31,31:31:1103:31:1112:-81.7275,0,-80.9159	0/1:53:21,32:21:756:32:1148:-87.6752,0,-52.4126	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:75:74,1:74:2660:1:36:0,-18.979,-236.047	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:68:32,36:32:1136:36:1288:-95.7535,0,-82.0789	0/1:68:13,55:13:468:55:1963:-156.475,0,-21.9896	0/1:9:7,2:7:243:2:72:-4.12745,0,-19.4982	0/0:31:31,0:31:1099:0:0:0,-9.33193,-99.2195	0/1:35:19,16:19:676:16:576:-41.6389,0,-50.6319	0/1:15:6,9:6:212:9:306:-23.3532,0,-14.9093	0/0:78:78,0:78:2773:0:0:0,-23.4803,-249.81	0/1:33:14,19:14:496:19:675:-51.143,0,-35.0403	0/0:108:108,0:108:3867:0:0:0,-32.5112,-348.224	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:83:34,49:34:1224:49:1751:-132.888,0,-85.4816	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:42:13,29:13:464:29:1040:-81.2711,0,-29.4542	0/1:86:41,45:41:1467:45:1594:-117.859,0,-106.437	0/1:30:16,14:16:576:14:495:-35.8521,0,-43.1441	0/1:20:10,10:10:360:10:352:-25.9976,0,-26.7237	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:34:19,15:19:676:15:531:-37.8869,0,-50.933	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:17:10,7:10:360:7:237:-16.5415,0,-27.6268	0/1:63:32,31:32:1148:31:1099:-80.2546,0,-84.6649	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944
chr07	4603925	.	G	T	35152.4	PASS	AB=0.513225;ABP=8.98351;AC=55;AF=0.292553;AN=188;AO=2032;CIGAR=1X;DP=7168;DPB=7168;DPRA=1.16972;EPP=4277.56;EPPR=10870.8;GTI=1;LEN=1;MEANALT=1.0339;MQM=59.5487;MQMR=59.9784;NS=94;NUMALT=1;ODDS=0.999705;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72883;QR=183557;RO=5132;RPL=16;RPP=4277.56;RPPR=10862.2;RPR=2016;RUN=1;SAF=0;SAP=4415.44;SAR=2032;SRF=1;SRP=11138.3;SRR=5131;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:39:13,26:13:468:26:932:-72.4238,0,-30.7195	0/1:115:55,60:55:1968:60:2151:-158.252,0,-142.777	0/1:257:144,113:144:5172:113:4037:-286.106,0,-388.254	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/1:87:44,43:44:1551:43:1548:-113.419,0,-113.689	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:92:56,36:56:2004:36:1296:-88.2278,0,-152.939	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:84:47,37:47:1657:37:1332:-94.883,0,-124.129	0/0:65:64,0:64:2296:0:0:0,-19.2659,-206.541	0/1:25:13,12:13:459:12:432:-31.6908,0,-34.1183	0/1:72:37,35:37:1328:35:1253:-91.3638,0,-98.1481	0/1:66:33,33:33:1188:33:1188:-87.3357,0,-87.3606	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/1:41:22,19:22:792:19:684:-49.5419,0,-59.2634	0/1:32:14,18:14:500:18:648:-48.9739,0,-35.7032	0/1:56:25,31:25:900:31:1116:-83.8931,0,-64.4633	0/0:174:174,0:174:6230:0:0:0,-52.3792,-560.794	0/1:53:18,35:18:644:35:1256:-97.3879,0,-42.336	0/1:123:68,55:68:2413:55:1963:-139.904,0,-180.399	0/1:33:10,23:10:360:23:828:-64.8652,0,-22.8103	0/1:31:21,10:21:756:10:360:-23.4124,0,-59.0353	0/0:243:241,2:241:8612:2:72:0,-66.3136,-768.202	0/0:141:140,1:140:5019:1:20:0,-40.5085,-449.918	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/1:182:81,101:81:2908:101:3605:-269.766,0,-207.167	0/0:118:113,5:113:4015:5:180:0,-18.9695,-344.987	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:164:75,88:75:2687:88:3156:-234.82,0,-192.646	0/1:117:47,70:47:1692:70:2507:-190.239,0,-117.346	0/1:46:20,26:20:720:26:936:-70.7075,0,-51.2814	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:78:39,39:39:1392:39:1404:-103.174,0,-102.099	0/1:27:11,16:11:396:16:576:-44.0463,0,-27.8549	0/1:88:46,42:46:1643:42:1504:-109.137,0,-121.663	0/1:51:30,21:30:1054:21:756:-52.9994,0,-79.8167	0/1:57:24,33:24:860:33:1188:-90.0699,0,-60.5631	0/0:92:91,1:91:3233:1:36:0,-24.0965,-287.594	0/0:75:74,1:74:2625:1:36:0,-18.979,-232.896	0/0:129:129,0:129:4593:0:0:0,-38.8329,-413.533	0/1:83:44,39:44:1576:39:1404:-101.661,0,-117.146	0/1:112:53,59:53:1896:59:2109:-156.34,0,-137.203	0/1:104:51,53:51:1819:53:1893:-139.339,0,-132.683	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:81:81,0:81:2903:0:0:0,-24.3834,-261.504	0/0:61:61,0:61:2187:0:0:0,-18.3628,-197.095	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:139:75,64:75:2700:64:2300:-165.406,0,-201.4	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:67:67,0:67:2386:0:0:0,-20.169,-214.997	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	1/1:1:0,1:0:0:1:21:-2.09991,-0.30103,0	0/0:271:271,0:271:9705:0:0:0,-81.5791,-873.397	0/0:152:151,1:151:5385:1:36:0,-42.1583,-481.181	0/1:54:25,29:25:900:29:1044:-78.011,0,-65.0654	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/1:204:109,95:109:3907:95:3416:-246.21,0,-290.412	0/1:143:51,92:51:1836:92:3312:-255.234,0,-122.473	0/1:41:27,14:27:968:14:504:-33.3022,0,-75.0951	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/1:66:23,43:23:824:43:1548:-119.612,0,-54.6153	0/1:52:29,23:29:1036:23:828:-59.185,0,-77.898	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.82	0/1:85:39,46:39:1391:46:1656:-123.73,0,-99.9007	0/0:114:114,0:114:4073:0:0:0,-34.3174,-366.755	0/0:170:170,0:170:6092:0:0:0,-51.1751,-548.381	0/1:49:20,29:20:716:29:1023:-77.5855,0,-50.0172	0/0:86:86,0:86:3065:0:0:0,-25.8886,-276.078	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.131	0/1:66:31,35:31:1108:35:1260:-93.8184,0,-80.1548	0/1:176:96,80:96:3456:80:2876:-205.941,0,-258.27	0/1:87:39,48:39:1404:48:1720:-128.878,0,-100.47	0/1:70:37,32:37:1323:32:1152:-82.8569,0,-98.2405	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.654	0/1:107:57,50:57:2048:50:1796:-129.686,0,-152.381	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.565	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:38:16,22:16:576:22:792:-60.1665,0,-40.7358	0/1:110:49,61:49:1755:61:2192:-164.24,0,-125.12	0/1:56:13,43:13:464:43:1525:-120.683,0,-25.2398	0/0:207:207,0:207:7368:0:0:0,-62.3132,-663.063	0/0:72:71,0:71:2552:0:0:0,-21.3731,-229.609
chr07	4603942	.	A	T	33762.4	PASS	AB=0.511729;ABP=7.69652;AC=55;AF=0.292553;AN=188;AO=2020;CIGAR=1X;DP=7136;DPB=7136;DPRA=1.13;EPP=4389.38;EPPR=11105.7;GTI=2;LEN=1;MEANALT=1.01724;MQM=59.5911;MQMR=59.9783;NS=94;NUMALT=1;ODDS=0.691083;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72029;QR=183234;RO=5113;RPL=2020;RPP=4389.38;RPPR=11105.7;RPR=0;RUN=1;SAF=0;SAP=4389.38;SAR=2020;SRF=0;SRP=11105.7;SRR=5113;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/1:37:12,25:12:428:25:885:-68.7853,0,-27.7207	0/1:113:53,60:53:1904:60:2152:-159.878,0,-137.621	0/1:258:146,112:146:5220:112:3997:-282.208,0,-392.273	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:87:44,43:44:1567:43:1536:-112.342,0,-115.131	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/1:90:54,36:54:1932:36:1266:-86.6557,0,-147.064	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:82:45,37:45:1616:37:1328:-95.1249,0,-121.046	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:25:13,12:13:455:12:428:-31.3312,0,-33.7562	0/1:71:38,33:38:1368:33:1180:-85.1324,0,-102.048	0/1:65:33,32:33:1184:32:1140:-83.3324,0,-87.3014	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:41:23,18:23:824:18:648:-46.3034,0,-62.1411	0/1:32:14,18:14:504:18:648:-48.9739,0,-36.0651	0/1:57:26,31:26:936:31:1104:-82.5116,0,-67.4008	0/0:174:174,0:174:6217:0:0:0,-52.3792,-559.626	0/1:53:18,35:18:633:35:1241:-96.0352,0,-41.3405	0/1:123:68,55:68:2444:55:1976:-141.065,0,-183.188	0/1:33:10,23:10:356:23:809:-63.1494,0,-22.4473	0/1:31:21,10:21:756:10:352:-22.6863,0,-59.0353	0/0:241:239,2:239:8557:2:72:0,-65.7115,-763.203	0/0:142:142,0:142:5077:0:0:0,-42.7463,-456.582	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:182:82,100:82:2948:100:3569:-266.573,0,-210.766	0/0:122:117,5:117:4208:5:180:0,-20.1736,-362.347	0/0:88:88,0:88:3143:0:0:0,-26.4906,-283.095	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/1:160:73,87:73:2628:87:3100:-231.048,0,-188.602	0/1:118:48,70:48:1720:70:2502:-189.455,0,-119.564	0/1:46:20,26:20:720:26:936:-70.7075,0,-51.2814	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:79:40,39:40:1436:39:1384:-101.073,0,-105.756	0/1:27:11,16:11:396:16:576:-44.0463,0,-27.8549	0/1:87:45,42:45:1616:42:1489:-108.086,0,-119.539	0/1:50:29,21:29:1040:21:756:-53.3004,0,-78.8629	0/1:58:25,33:25:900:33:1184:-89.4086,0,-63.8613	0/0:91:90,1:90:3204:1:36:0,-23.7955,-284.983	0/0:74:73,1:73:2608:1:36:0,-18.6779,-231.37	0/0:130:130,0:130:4680:0:0:0,-39.1339,-421.358	0/1:83:44,39:44:1584:39:1400:-101.301,0,-117.866	0/1:110:51,59:51:1824:59:2081:-154.423,0,-131.328	0/1:102:50,52:50:1792:52:1864:-137.33,0,-130.857	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.947	0/0:61:60,0:60:2156:0:0:0,-18.0618,-193.947	0/1:10:7,3:7:252:3:104:-6.69251,0,-20.0187	0/1:138:75,63:75:2696:63:2252:-161.347,0,-201.342	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:81:81,0:81:2907:0:0:0,-24.3834,-261.864	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/0:267:267,0:267:9596:0:0:0,-80.375,-863.588	0/0:153:152,1:152:5425:1:36:0,-42.4593,-484.737	0/1:54:25,29:25:900:29:1040:-77.6506,0,-65.0654	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.454	0/1:203:110,93:110:3931:93:3309:-236.886,0,-292.873	0/1:145:53,92:53:1904:92:3285:-252.204,0,-127.988	0/1:39:25,14:25:896:14:504:-33.9042,0,-69.2202	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:66:23,43:23:828:43:1548:-119.612,0,-54.9761	0/1:52:29,23:29:1027:23:818:-58.2862,0,-77.0886	0/0:92:92,0:92:3299:0:0:0,-27.6948,-297.128	0/1:86:40,46:40:1440:46:1628:-120.91,0,-104.009	0/0:111:111,0:111:3960:0:0:0,-33.4143,-356.59	0/0:171:171,0:171:6132:0:0:0,-51.4761,-551.979	0/1:48:19,29:19:665:29:1044:-79.8107,0,-45.7233	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.499	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:83:82,0:82:2948:0:0:0,-24.6845,-265.19	0/1:67:32,35:32:1148:35:1237:-91.4441,0,-83.4527	0/1:178:97,80:97:3472:80:2810:-199.466,0,-259.05	0/1:87:39,48:39:1404:48:1716:-128.519,0,-100.47	0/1:71:38,33:38:1364:33:1169:-84.1428,0,-101.688	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:107:58,49:58:2076:49:1756:-126.105,0,-154.9	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.371	0/1:39:16,23:16:567:23:805:-61.0273,0,-39.6206	0/1:109:48,61:48:1724:61:2177:-163.051,0,-122.633	0/1:57:15,42:15:532:42:1504:-118.496,0,-31.0525	0/0:204:204,0:204:7289:0:0:0,-61.4101,-656.06	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051
chr07	4655796	.	CAG	GAA,GAG	169641	PASS	AB=0.547093,0.450114;ABP=78.8883,88.1542;AC=135,51;AF=0.725806,0.274194;AN=186;AO=6224,1783;CIGAR=1X1M1X,1X2M;DP=8023;DPB=8024.33;DPRA=0,1.01957;EPP=13518.3,3874.75;EPPR=5.18177;GTI=2;LEN=3,1;MEANALT=1.77419,2.15517;MQM=50.4431,59.627;MQMR=60;NS=93;NUMALT=2;ODDS=1.15158;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=72,0;PQR=0;PRO=0;QA=220566,63798;QR=36;RO=1;RPL=0,0;RPP=13518.3,3874.75;RPPR=5.18177;RPR=6224,1783;RUN=1,1;SAF=6224,1783;SAP=13518.3,3874.75;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,19,20:0:0:19,20:676,704:-112.567,-57.6596,-51.9401,-55.2603,0,-49.2397	1/2:63:0,37,26:0:0:37,26:1309,913:-180.716,-74.6285,-63.4904,-106.438,0,-98.6117	1/2:136:0,106,29:0:0:106,29:3762,1044:-388.292,-85.1841,-53.2749,-303.154,0,-294.424	1/2:213:0,120,93:0:0:120,93:4243,3313:-613.865,-270.078,-233.954,-344.141,0,-316.145	1/1:42:0,39,3:0:0:39,3:1347,108:-120.804,-11.7402,0,-111.99,-2.56809,-111.087	1/1:18:0,18,0:0:0:18,0:631,0:-56.9068,-5.41854,0,-56.9068,-5.41854,-56.9068	1/1:32:0,32,0:0:0:32,0:1141,0:-102.24,-9.63296,0,-102.24,-9.63296,-102.24	1/2:124:0,75,49:0:0:75,49:2680,1745:-359.712,-142.559,-119.981,-217.509,0,-202.758	1/1:116:0,116,0:0:0:116,0:4085,0:-365.901,-34.9195,0,-365.901,-34.9195,-365.901	1/2:60:0,33,27:0:0:33,27:1156,972:-173.387,-79.6488,-69.7148,-94.0928,0,-85.965	1/1:22:0,22,0:0:0:22,0:772,0:-68.6181,-6.62266,0,-68.6181,-6.62266,-68.6181	1/2:71:0,27,44:0:0:27,44:960,1576:-206.792,-128.865,-120.737,-78.2828,0,-65.0375	1/1:64:0,64,0:0:0:64,0:2230,0:-200.257,-19.2659,0,-200.257,-19.2659,-200.257	1/2:45:0,20,25:0:0:20,25:698,900:-130.38,-73.7953,-67.7747,-56.9377,0,-49.4119	1/2:69:0,43,25:0:0:43,25:1513,892:-195.043,-72.6834,-59.7391,-122.355,0,-114.829	1/2:56:0,29,27:0:0:29,27:1013,955:-160.242,-78.1221,-69.3922,-82.4705,0,-74.3427	1/1:22:0,22,0:0:0:22,0:778,0:-70.0887,-6.62266,0,-70.0887,-6.62266,-70.0887	1/2:19:0,6,13:0:0:6,13:216,468:-56.096,-38.5355,-36.7294,-17.9195,0,-14.0061	1/2:22:0,13,9:0:0:13,9:463,324:-64.4004,-26.7966,-22.8832,-37.9616,0,-35.2523	1/2:161:0,90,71:0:0:90,71:3185,2526:-464.558,-206.204,-179.111,-258.708,0,-237.335	1/1:227:0,227,0:0:0:227,0:8096,0:-724.523,-68.3338,0,-724.523,-68.3338,-724.523	1/2:89:0,50,38:0:0:50,38:1773,1340:-253.051,-109.101,-94.0494,-143.964,0,-132.525	1/2:88:0,51,37:0:0:51,37:1800,1332:-255.006,-108.927,-93.575,-146.434,0,-135.296	1/2:67:0,39,28:0:0:39,28:1378,1008:-193.76,-82.6075,-70.8673,-111.508,0,-103.079	1/2:95:0,55,40:0:0:55,40:1945,1432:-274.066,-116.866,-100.31,-157.554,0,-145.513	1/1:125:0,125,0:0:0:125,0:4419,0:-395.727,-37.6288,0,-395.727,-37.6288,-395.727	1/1:254:0,253,1:0:0:253,1:8997,36:-805.291,-76.1606,0,-802.354,-72.8633,-802.053	1/1:25:0,25,0:0:0:25,0:892,0:-79.6076,-7.52575,0,-79.6076,-7.52575,-79.6076	1/2:380:0,177,201:0:0:177,201:6267,7220:-1096.25,-588.955,-535.673,-507.295,0,-446.788	1/1:124:0,123,1:0:0:123,1:4393,36:-393.273,-37.0267,0,-390.336,-33.7294,-390.035	1/1:108:0,108,0:0:0:108,0:3822,0:-342.807,-32.5112,0,-342.807,-32.5112,-342.807	1/2:11:0,7,4:0:0:7,4:247,144:-31.9652,-12.0986,-9.99138,-20.2222,0,-19.0181	1/1:17:0,17,0:0:0:17,0:600,0:-53.6432,-5.11751,0,-53.6432,-5.11751,-53.6432	.:.:.:.:.:.:.:.	1/1:7:0,7,0:0:0:7,0:249,0:-22.6853,-2.10721,0,-22.6853,-2.10721,-22.6853	1/2:12:0,8,4:0:0:8,4:288,144:-35.5231,-12.1095,-9.70126,-23.7731,0,-22.569	1/2:172:0,79,93:0:0:79,93:2837,3335:-502.639,-272.298,-248.517,-230.699,0,-202.703	1/2:104:0,57,47:0:0:57,47:2038,1664:-301.48,-135.886,-118.727,-165.95,0,-151.801	1/2:29:0,14,15:0:0:14,15:496,540:-84.4236,-44.4211,-40.2067,-40.3577,0,-35.8423	1/1:3:0,3,0:0:0:3,0:101,0:-9.40202,-0.90309,0,-9.40202,-0.90309,-9.40202	1/2:100:0,64,35:0:0:64,35:2276,1256:-286.916,-102.451,-83.1847,-184.463,0,-173.927	1/2:15:0,9,6:0:0:9,6:324,216:-44.3142,-17.9735,-15.2643,-26.6999,0,-24.8937	1/2:87:0,69,18:0:0:69,18:2421,640:-248.193,-52.292,-31.5209,-196.056,0,-190.638	1/2:32:0,14,18:0:0:14,18:492,648:-93.1431,-53.231,-49.0166,-40.2665,0,-34.848	1/2:48:0,27,21:0:0:27,21:963,752:-139.914,-61.6846,-53.5568,-78.5863,0,-72.2646	1/1:95:0,95,0:0:0:95,0:3370,0:-301.611,-28.5979,0,-301.611,-28.5979,-301.611	1/1:128:0,127,0:0:0:127,0:4479,0:-399.994,-38.2308,0,-399.994,-38.2308,-399.994	1/1:208:0,208,0:0:0:208,0:7342,0:-656.686,-62.6142,0,-656.686,-62.6142,-656.686	1/2:41:0,34,7:0:0:34,7:1196,252:-117.263,-20.911,-10.6759,-96.7093,0,-94.6021	1/2:84:0,44,40:0:0:44,40:1573,1436:-245.043,-117.496,-104.251,-127.903,0,-115.862	1/2:140:0,83,57:0:0:83,57:2941,2048:-405.329,-167.411,-142.425,-238.274,0,-221.115	1/1:9:0,8,0:0:0:8,0:288,0:-25.8983,-2.40824,0,-25.8983,-2.40824,-25.8983	1/1:169:0,169,0:0:0:169,0:6007,0:-537.464,-50.8741,0,-537.464,-50.8741,-537.464	1/1:64:0,64,0:0:0:64,0:2262,0:-202.651,-19.2659,0,-202.651,-19.2659,-202.651	1/2:5:0,1,4:0:0:1,4:34,144:-14.8566,-12.1095,-11.8085,-3.09039,0,-1.88627	1/2:163:0,77,83:0:0:77,83:2719,2984:-463.686,-243.424,-220.245,-220.268,0,-195.282	1/2:36:0,21,15:0:0:21,15:732,506:-100.605,-41.3424,-35.0208,-59.6034,0,-55.088	1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chr07	4655897	.	TT	CT,CC	136188	PASS	AB=0.534493,0.463443;ABP=38.0637,42.3836;AC=138,50;AF=0.734043,0.265957;AN=188;AO=5087,1581;CIGAR=1X1M,2X;DP=6679;DPB=6679;DPRA=0,1.0544;EPP=11049.3,3436.11;EPPR=9.52472;GTI=3;LEN=1,2;MEANALT=1.64894,2.11111;MQM=59.7498,32.8482;MQMR=60;NS=94;NUMALT=2;ODDS=0.0464947;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=182006,55906;QR=108;RO=3;RPL=0,0;RPP=11049.3,3436.11;RPPR=9.52472;RPR=5087,1581;RUN=1,1;SAF=0,0;SAP=11049.3,3436.11;SAR=5087,1581;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,12,20:0:0:12,20:432,720:-81.6359,-46.3687,-42.7563,-35.6006,0,-29.58	1/2:105:0,63,42:0:0:63,42:2241,1494:-278.163,-95.5639,-76.599,-182.913,0,-170.27	1/2:65:0,41,24:0:0:41,24:1468,840:-174.529,-54.7782,-42.4359,-120.063,0,-112.838	1/2:139:0,80,59:0:0:80,59:2872,2105:-385.395,-151.099,-127.017,-234.631,0,-216.87	1/1:21:0,21,0:0:0:21,0:756,0:-68.2316,-6.32163,0,-68.2316,-6.32163,-68.2316	1/1:49:0,49,0:0:0:49,0:1749,0:-157.692,-14.7505,0,-157.692,-14.7505,-157.692	1/1:94:0,94,0:0:0:94,0:3365,0:-303.038,-28.2968,0,-303.038,-28.2968,-303.038	1/2:101:0,63,37:0:0:63,37:2256,1286:-266.615,-82.8671,-63.9022,-183.767,0,-172.629	1/1:81:0,81,0:0:0:81,0:2889,0:-260.244,-24.3834,0,-260.244,-24.3834,-260.244	1/2:102:0,59,43:0:0:59,43:2093,1530:-278.782,-108.235,-90.4739,-170.877,0,-157.933	1/1:36:0,36,0:0:0:36,0:1288,0:-116.128,-10.8371,0,-116.128,-10.8371,-116.128	1/2:66:0,36,30:0:0:36,30:1292,1026:-172.332,-66.909,-56.0719,-105.739,0,-96.7076	1/1:58:0,58,0:0:0:58,0:2080,0:-187.462,-17.4597,0,-187.462,-17.4597,-187.462	1/2:69:0,44,25:0:0:44,25:1584,887:-188.401,-59.1238,-45.8784,-129.595,0,-122.07	1/2:60:0,27,33:0:0:27,33:968,1155:-161.581,-82.6126,-74.4847,-79.3049,0,-69.3709	1/2:51:0,26,25:0:0:26,25:923,875:-135.619,-60.3865,-52.5597,-75.56,0,-68.0342	1/1:61:0,61,0:0:0:61,0:2160,0:-194.657,-18.3628,0,-194.657,-18.3628,-194.657	1/2:47:0,23,24:0:0:23,24:824,833:-121.568,-54.3384,-47.4147,-67.5514,0,-60.3267	1/2:36:0,19,17:0:0:19,17:684,608:-95.3457,-39.4978,-33.7782,-56.1708,0,-51.0532	1/2:66:0,38,28:0:0:38,28:1368,1008:-183.739,-72.0978,-60.6587,-111.977,0,-103.548	1/1:129:0,129,0:0:0:129,0:4620,0:-415.951,-38.8329,0,-415.951,-38.8329,-415.951	1/2:16:0,8,8:0:0:8,8:269,283:-43.1811,-21.3842,-18.976,-22.1279,0,-19.7196	1/2:51:0,24,27:0:0:24,27:855,955:-138.137,-68.4299,-61.2052,-70.0431,0,-61.9153	1/2:99:0,59,40:0:0:59,40:2124,1392:-268.462,-95.1304,-77.3696,-173.654,0,-161.612	1/2:8:0,3,5:0:0:3,5:108,180:-21.3784,-12.5457,-11.6426,-9.17208,0,-7.66693	1/1:268:0,268,0:0:0:268,0:9588,0:-862.841,-80.676,0,-862.841,-80.676,-862.841	1/1:91:0,91,0:0:0:91,0:3260,0:-293.607,-27.3937,0,-293.607,-27.3937,-293.607	1/1:35:0,35,0:0:0:35,0:1236,0:-111.538,-10.5361,0,-111.538,-10.5361,-111.538	1/2:95:0,49,46:0:0:49,46:1755,1627:-264.201,-121.06,-106.31,-143.482,0,-129.635	1/1:137:0,131,6:0:0:131,6:4685,214:-421.48,-39.4349,0,-406.855,-24.5025,-405.048	1/1:88:0,88,0:0:0:88,0:3157,0:-284.253,-26.4906,0,-284.253,-26.4906,-284.253	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:2:0,2,0:0:0:2,0:72,0:-6.82813,-0.60206,0,-6.82813,-0.60206,-6.82813	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:5:0,3,2:0:0:3,2:108,72:-13.7672,-4.91319,-4.0101,-9.17208,0,-8.57002	1/2:191:0,102,89:0:0:102,89:3657,3148:-531.988,-233.709,-203.004,-298.62,0,-271.828	1/2:192:0,130,61:0:0:130,61:4664,2154:-525.831,-145.37,-106.236,-380.473,0,-362.11	1/2:35:0,16,19:0:0:16,19:572,646:-89.5603,-42.8865,-38.0701,-46.9969,0,-41.2774	1/2:6:0,5,1:0:0:5,1:176,36:-17.1202,-2.75351,-1.24836,-14.6799,0,-14.3788	1/2:178:0,106,70:0:0:106,70:3807,2449:-477.735,-167.18,-135.271,-310.603,0,-289.531	1/2:31:0,14,17:0:0:14,17:504,610:-82.7995,-41.6503,-37.4359,-41.4837,0,-36.3662	1/2:89:0,53,36:0:0:53,36:1904,1256:-241.789,-86.4295,-70.475,-155.683,0,-144.846	1/2:70:0,38,32:0:0:38,32:1352,1130:-190.416,-80.2686,-68.8294,-110.479,0,-100.846	1/2:66:0,30,36:0:0:30,36:1061,1292:-179.032,-92.6008,-83.5699,-86.7685,0,-75.9314	1/1:79:0,79,0:0:0:79,0:2834,0:-255.296,-23.7814,0,-255.296,-23.7814,-255.296	1/1:85:0,85,0:0:0:85,0:3047,0:-274.445,-25.5876,0,-274.445,-25.5876,-274.445	1/1:130:0,130,0:0:0:130,0:4655,0:-419.101,-39.1339,0,-419.101,-39.1339,-419.101	1/2:68:0,26,42:0:0:26,42:936,1482:-182.522,-106.134,-98.3072,-76.7303,0,-64.0871	1/2:108:0,60,48:0:0:60,48:2156,1723:-298.986,-123.08,-105.018,-176.243,0,-161.793	1/2:63:0,43,20:0:0:43,20:1544,714:-178.769,-52.7965,-39.8522,-126.308,0,-120.287	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:82:0,82,0:0:0:82,0:2948,0:-265.553,-24.6845,0,-265.553,-24.6845,-265.553	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:10:0,7,3:0:0:7,3:248,108:-27.4722,-7.22465,-5.11744,-20.557,0,-19.6539	1/2:90:0,38,52:0:0:38,52:1364,1835:-236.675,-125.388,-113.949,-111.622,0,-95.968	1/2:42:0,13,29:0:0:13,29:468,1029:-112.158,-73.9582,-70.0448,-38.5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chr07	4666669	.	C	T	29412.8	PASS	AB=0.360141;ABP=869.161;AC=50;AF=0.268817;AN=186;AO=1842;CIGAR=1X;DP=11319;DPB=11319;DPRA=0.815268;EPP=2901.4;EPPR=15374;GTI=8;LEN=1;MEANALT=1.11111;MQM=59.9159;MQMR=59.9732;NS=93;NUMALT=1;ODDS=1.71689;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65322;QR=336675;RO=9462;RPL=1705;RPP=2901.4;RPPR=15374;RPR=137;RUN=1;SAF=1842;SAP=4002.86;SAR=0;SRF=9462;SRP=20549.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:25,3:25:892:3:104:-0.992346,0,-71.9071	0/1:150:126,24:126:4491:24:864:-32.9281,0,-359.204	0/1:212:149,63:149:5261:63:2251:-139.025,0,-409.812	0/1:326:209,117:209:7405:117:4172:-277.528,0,-568.367	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.323	0/0:165:165,0:165:5879:0:0:0,-49.6699,-529.223	0/1:167:127,40:127:4487:40:1415:-77.3746,0,-353.541	0/0:125:125,0:125:4466:0:0:0,-37.6287,-402.109	0/1:154:94,60:94:3359:60:2135:-146.042,0,-256.168	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:78:33,45:33:1171:45:1573:-118.362,0,-82.2163	0/0:85:84,0:84:2988:0:0:0,-25.2865,-268.791	0/1:70:34,36:34:1189:36:1288:-95.1515,0,-86.2408	0/1:66:38,28:38:1356:28:954:-66.2961,0,-102.473	0/1:59:30,29:30:1068:29:1021:-74.4371,0,-78.6713	0/0:80:80,0:80:2858:0:0:0,-24.0824,-257.457	0/1:47:33,14:33:1184:14:504:-31.5497,0,-92.7199	0/1:24:16,8:16:576:8:284:-18.6786,0,-44.9503	0/1:192:134,58:134:4776:58:2059:-127.783,0,-372.199	0/0:211:211,0:211:7471:0:0:0,-63.5173,-672.433	0/1:40:29,11:29:1032:11:392:-23.5789,0,-81.1523	0/1:142:74,68:74:2602:68:2381:-171.798,0,-191.681	0/1:128:105,22:105:3755:22:784:-32.3317,0,-299.599	0/1:53:43,10:43:1531:10:354:-16.2452,0,-122.128	0/0:531:530,0:530:18846:0:0:0,-159.546,-1695.5	0/0:303:303,0:303:10790:0:0:0,-91.2121,-971.012	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.181	0/1:336:216,120:216:7712:120:4239:-280.549,0,-592.968	0/0:236:235,1:235:8420:1:32:0,-67.8438,-754.597	0/0:180:180,0:180:6424:0:0:0,-54.1854,-578.247	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:191:107,83:107:3813:83:2947:-207.875,0,-285.811	0/1:125:107,18:107:3809:18:644:-20.6619,0,-305.379	0/1:58:47,11:47:1673:11:396:-18.523,0,-133.396	.:.:.:.:.:.:.:.	0/1:170:108,62:108:3840:62:2208:-147.81,0,-294.611	0/1:37:22,15:22:777:15:514:-35.4457,0,-59.1123	0/1:126:88,38:88:3131:38:1356:-84.4107,0,-244.087	0/1:95:51,44:51:1823:44:1563:-112.363,0,-135.751	0/1:53:24,28:24:826:28:979:-72.4949,0,-58.7277	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:176:176,0:176:6264:0:0:0,-52.9813,-563.857	0/0:254:254,0:254:8990:0:0:0,-76.4616,-809.086	0/1:83:53,30:53:1869:30:1064:-71.0862,0,-143.502	0/1:193:118,75:118:4232:75:2668:-182.268,0,-322.96	0/1:167:115,52:115:4086:52:1842:-115.787,0,-317.656	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:219:217,2:217:7779:2:72:0,-59.0888,-693.302	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:144:106,38:106:3747:38:1340:-77.5462,0,-294.079	0/1:54:33,21:33:1184:21:739:-50.5768,0,-90.6127	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:143:143,0:143:5091:0:0:0,-43.0473,-458.336	0/0:104:104,0:104:3696:0:0:0,-31.3071,-332.842	0/1:8:3,5:3:93:5:180:-14.1438,0,-6.26849	0/0:324:323,0:323:11532:0:0:0,-97.2327,-1037.54	0/0:321:318,2:318:11284:2:72:0,-89.8527,-1008.58	0/1:99:58,41:58:2054:41:1443:-100.363,0,-155.324	0/0:77:77,0:77:2728:0:0:0,-23.1793,-245.765	0/1:197:147,50:147:5240:50:1784:-101.54,0,-412.437	0/1:136:39,97:39:1396:97:3463:-270.941,0,-84.999	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7641	0/0:161:161,0:161:5739:0:0:0,-48.4658,-516.629	0/1:56:40,16:40:1418:16:574:-35.1366,0,-111.058	0/1:25:8,17:8:288:17:608:-47.5263,0,-18.7417	0/0:128:127,1:127:4496:1:36:0,-34.9336,-401.213	0/1:113:51,62:51:1809:62:2220:-166.048,0,-129.073	0/0:287:287,0:287:10169:0:0:0,-86.3956,-913.952	0/0:257:257,0:257:9176:0:0:0,-77.3647,-825.81	0/1:75:66,9:66:2355:9:315:-6.10998,0,-189.631	0/0:226:226,0:226:8067:0:0:0,-68.0328,-726.051	0/0:25:24,0:24:856:0:0:0,-7.22472,-77.0014	0/0:193:193,0:193:6883:0:0:0,-58.0988,-619.533	0/1:113:81,32:81:2874:32:1118:-66.9096,0,-224.881	0/0:346:345,0:345:12283:0:0:0,-103.855,-1104.96	0/1:65:50,14:50:1770:14:496:-25.3489,0,-139.956	0/1:74:45,29:45:1608:29:1020:-69.7971,0,-122.734	0/0:101:100,0:100:3550:0:0:0,-30.103,-319.456	0/1:107:57,50:57:2040:50:1753:-125.841,0,-151.662	0/0:52:52,0:52:1847:0:0:0,-15.6536,-164.7	0/0:79:78,0:78:2783:0:0:0,-23.4803,-250.351	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/1:45:24,21:24:856:21:756:-54.8209,0,-63.8148	0/1:83:42,41:42:1486:41:1455:-106.26,0,-109.048	0/1:85:28,57:28:1004:57:2035:-157.832,0,-65.0883	0/0:226:225,0:225:7939:0:0:0,-67.7317,-714.181	0/0:98:97,0:97:3452:0:0:0,-29.1999,-310.532
chr07	4666756	.	T	A	66098.9	PASS	AB=0.465948;ABP=68.3766;AC=51;AF=0.271277;AN=188;AO=3074;CIGAR=1X;DP=13224;DPB=13224;DPRA=1.08302;EPP=6678.12;EPPR=22043.5;GTI=3;LEN=1;MEANALT=1;MQM=50.0423;MQMR=48.8236;NS=94;NUMALT=1;ODDS=1.72406;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109920;QR=363543;RO=10150;RPL=1787;RPP=179.61;RPPR=4163.7;RPR=1287;RUN=1;SAF=1287;SAP=179.61;SAR=1787;SRF=2870;SRP=4163.7;SRR=7280;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:25,27:25:896:27:968:-70.8742,0,-63.1641	0/1:138:70,68:70:2516:68:2432:-170.577,0,-180.587	0/1:148:79,69:79:2820:69:2484:-175.107,0,-206.531	0/1:253:146,107:146:5236:107:3832:-264.852,0,-392.792	0/0:67:66,1:66:2376:1:36:0,-16.6663,-207.354	0/0:72:72,0:72:2592:0:0:0,-21.6742,-229.942	0/0:208:208,0:208:7433:0:0:0,-62.6142,-665.183	0/1:174:88,86:88:3148:86:3069:-215.578,0,-226.312	0/0:230:230,0:230:8253:0:0:0,-69.2369,-734.357	0/1:133:63,70:63:2237:70:2497:-182.124,0,-160.777	0/0:110:108,2:108:3880:2:72:0,-26.4146,-338.652	0/1:169:85,84:85:3047:84:3003:-212.591,0,-219.844	0/0:165:161,4:161:5762:4:144:0,-36.8883,-499.392	0/1:125:73,52:73:2624:52:1864:-128.25,0,-196.762	0/1:134:70,64:70:2516:64:2300:-163.734,0,-184.886	0/1:117:56,61:56:2012:61:2188:-157.709,0,-144.868	0/0:86:86,0:86:3076:0:0:0,-25.8886,-274.369	0/1:65:28,37:28:1008:37:1328:-96.2664,0,-69.7361	0/1:58:38,20:38:1353:20:720:-46.4979,0,-102.87	0/1:208:130,78:130:4656:78:2808:-187.632,0,-353.031	0/0:230:230,0:230:8209:0:0:0,-69.2369,-733.408	0/1:97:35,62:35:1256:62:2164:-162.931,0,-83.8159	0/1:139:80,59:80:2852:59:2105:-146.07,0,-211.528	0/1:96:68,28:68:2429:28:1000:-57.485,0,-188.456	0/1:71:38,33:38:1368:33:1165:-82.7799,0,-101.117	0/0:375:370,5:370:13231:5:180:0,-96.4957,-1166.47	0/0:396:396,0:396:14205:0:0:0,-119.208,-1267.26	0/0:81:79,2:79:2840:2:68:0,-18.1083,-247.957	0/1:378:235,143:235:8417:143:5105:-341.181,0,-637.543	0/0:238:228,10:228:8196:10:356:0,-39.8228,-696.638	0/0:163:161,2:161:5760:2:72:0,-42.3257,-508.655	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.79966	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.5668	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.63241	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.1807	0/0:14:13,1:13:453:1:36:0,-0.759929,-37.2669	0/1:364:174,190:174:6233:190:6800:-497.526,0,-448.99	0/1:184:114,70:114:4104:70:2489:-165.156,0,-311.301	0/1:82:40,42:40:1417:42:1512:-107.701,0,-101.613	1/1:1:0,1:0:0:1:36:-3.5027,-0.30103,0	0/1:190:118,72:118:4210:72:2573:-169.984,0,-319.173	0/1:58:26,32:26:936:32:1144:-84.1923,0,-66.1935	0/1:160:91,69:91:3253:69:2456:-169.328,0,-241.2	0/1:135:70,65:70:2508:65:2332:-164.591,0,-184.272	0/1:113:55,58:55:1972:58:2064:-150.05,0,-142.617	0/0:141:141,0:141:5048:0:0:0,-42.4452,-449.627	0/0:136:136,0:136:4865:0:0:0,-40.9401,-431.668	0/0:258:258,0:258:9253:0:0:0,-77.6657,-826.701	0/1:138:85,53:85:3044:53:1896:-127.84,0,-231.534	0/1:162:95,67:95:3412:67:2389:-163.616,0,-257.244	0/1:140:95,45:95:3408:45:1604:-100.571,0,-263.079	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.8903	0/0:194:194,0:194:6964:0:0:0,-58.3998,-619.953	0/0:79:79,0:79:2821:0:0:0,-23.7814,-252.786	0/1:7:5,2:5:180:2:72:-4.59292,0,-14.2995	0/1:174:97,77:97:3447:77:2764:-192.118,0,-255.031	0/1:77:54,23:54:1897:23:824:-50.0508,0,-145.967	1/1:2:0,2:0:0:2:72:-6.77694,-0.60206,0	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.395	0/0:145:144,1:144:5172:1:36:0,-40.1466,-458.132	0/0:194:192,2:192:6880:2:72:0,-51.6104,-607.851	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58648	0/0:244:243,1:243:8697:1:36:0,-69.9303,-774.792	0/0:265:263,2:263:9413:2:72:0,-73.0308,-830.826	0/1:102:56,46:56:2012:46:1636:-111.846,0,-149.2	0/0:100:100,0:100:3573:0:0:0,-30.103,-320.136	0/1:189:95,94:95:3397:94:3368:-242.885,0,-247.431	0/1:225:70,155:70:2516:155:5523:-422.76,0,-157.754	0/1:68:32,36:32:1144:36:1296:-95.5578,0,-82.1819	0/0:82:82,0:82:2944:0:0:0,-24.6845,-261.895	0/1:115:50,65:50:1788:65:2336:-172.9,0,-125.567	0/1:32:20,12:20:720:12:432:-29.4074,0,-55.1474	0/0:187:187,0:187:6685:0:0:0,-56.2926,-592.802	0/1:145:79,66:79:2809:66:2345:-161.498,0,-206.049	0/0:359:359,0:359:12837:0:0:0,-108.07,-1145.25	0/0:290:289,1:289:10353:1:36:0,-83.7502,-922.21	0/1:61:36,25:36:1288:25:892:-60.4373,0,-96.6904	0/0:105:105,0:105:3776:0:0:0,-31.6081,-336.01	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.2513	0/0:202:199,3:199:7129:3:108:0,-51.0005,-627.848	0/1:130:75,55:75:2665:55:1968:-133.787,0,-198.276	0/0:361:361,0:361:12949:0:0:0,-108.672,-1157.84	0/1:154:77,77:77:2749:77:2745:-195.289,0,-199.375	0/1:119:64,55:64:2296:55:1972:-139.859,0,-169.444	0/0:121:120,1:120:4297:1:36:0,-32.8761,-379.149	0/1:251:124,127:124:4444:127:4556:-329.483,0,-320.576	0/0:55:54,1:54:1940:1:36:0,-13.1022,-168.211	0/0:185:184,1:184:6612:1:36:0,-52.1695,-583.937	0/0:148:147,1:147:5268:1:36:0,-41.0979,-461.566	0/1:66:41,25:41:1472:25:900:-60.6754,0,-111.074	0/1:169:82,87:82:2944:87:3128:-227.6,0,-210.613	0/1:125:39,86:39:1396:86:3084:-237.189,0,-87.5063	0/0:183:182,1:182:6536:1:36:0,-51.54,-581.198	0/0:171:166,5:166:5964:5:176:0,-35.4931,-517.742
chr07	4845727	.	GATG	AATA,GATA	160792	PASS	AB=0.395251,0.602737;ABP=476.583,458.561;AC=134,52;AF=0.72043,0.27957;AN=186;AO=4708,3009;CIGAR=1X2M1X,3M1X;DP=7737;DPB=7737.75;DPRA=21.0136,1.61793;EPP=10226.3,6536.97;EPPR=7.35324;GTI=7;LEN=4,1;MEANALT=1.82609,2.16949;MQM=59.9494,59.987;MQMR=60;NS=93;NUMALT=2;ODDS=0.354673;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=72,0;PQR=0;PRO=0;QA=166825,107764;QR=69;RO=2;RPL=4708,3009;RPP=10226.3,6536.97;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=4708,3009;SAP=10226.3,6536.97;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:29:0,11,18:0:0:11,18:394,640:-84.644,-52.5108,-49.1994,-32.4902,0,-27.0717	1/2:92:0,19,73:0:0:19,73:668,2615:-267.995,-213.622,-207.903,-54.7252,0,-32.75	1/2:109:0,31,78:0:0:31,78:1079,2796:-316.134,-228.4,-219.068,-88.0847,0,-64.6044	1/2:159:0,49,110:0:0:49,110:1739,3933:-462.734,-321.048,-306.297,-142.042,0,-108.929	1/1:20:0,19,1:0:0:19,1:681,36:-61.2599,-5.71957,0,-58.3224,-2.42233,-58.0214	1/1:26:0,26,0:0:0:26,0:908,0:-82.0335,-7.82678,0,-82.0335,-7.82678,-82.0335	1/1:71:0,71,0:0:0:71,0:2510,0:-226.152,-21.3731,0,-226.152,-21.3731,-226.152	1/2:104:0,21,82:0:0:21,82:739,2942:-300.114,-239.957,-233.636,-60.1499,0,-35.4655	1/1:62:0,61,0:0:0:61,0:2173,0:-195.486,-18.3628,0,-195.486,-18.3628,-195.486	1/2:86:0,23,63:0:0:23,63:797,2249:-248.479,-183.707,-176.783,-65.122,0,-46.1571	1/1:116:0,115,1:0:0:115,1:4104,36:-369.181,-34.6185,0,-366.244,-31.3217,-365.943	1/2:131:0,70,61:0:0:70,61:2503,2196:-383.635,-179.542,-158.47,-204.451,0,-186.088	1/1:120:0,119,0:0:0:119,0:4221,0:-379.713,-35.8226,0,-379.713,-35.8226,-379.713	1/2:123:0,67,55:0:0:67,55:2382,1976:-355.354,-161.257,-141.088,-194.153,0,-177.597	1/2:82:0,40,42:0:0:40,42:1432,1512:-240.509,-123.731,-111.69,-117.137,0,-104.493	1/2:122:0,69,53:0:0:69,53:2416,1900:-351.895,-155.323,-134.552,-196.927,0,-180.972	1/1:67:0,67,0:0:0:67,0:2360,0:-212.658,-20.169,0,-212.658,-20.169,-212.658	1/2:52:0,17,35:0:0:17,35:608,1260:-152.746,-103.169,-98.0519,-49.9347,0,-39.3986	1/2:59:0,31,28:0:0:31,28:1112,1000:-172.532,-81.8865,-72.5546,-91.0031,0,-82.5743	1/2:133:0,29,104:0:0:29,104:1023,3702:-385.369,-302.073,-293.343,-83.6489,0,-52.3418	1/1:85:0,84,0:0:0:84,0:2965,0:-266.724,-25.2865,0,-266.724,-25.2865,-266.724	1/2:89:0,17,72:0:0:17,72:605,2573:-259.452,-210.145,-205.027,-49.6633,0,-27.9891	1/2:95:0,29,65:0:0:29,65:1029,2336:-274.409,-190.572,-181.843,-83.8332,0,-64.2662	1/2:67:0,18,49:0:0:18,49:645,1764:-196.897,-144.293,-138.875,-52.9625,0,-38.212	1/2:88:0,37,51:0:0:37,51:1324,1824:-257.051,-149.089,-137.95,-108.32,0,-92.9675	1/1:112:0,112,0:0:0:112,0:3973,0:-357.763,-33.7154,0,-357.763,-33.7154,-357.763	1/1:112:0,111,0:0:0:111,0:3949,0:-355.23,-33.4143,0,-355.23,-33.4143,-355.23	1/1:44:0,44,0:0:0:44,0:1563,0:-140.602,-13.2453,0,-140.602,-13.2453,-140.602	1/2:165:0,38,126:0:0:38,126:1347,4513:-477.78,-368.046,-356.607,-109.73,0,-71.8	1/1:61:0,58,3:0:0:58,3:2069,108:-186.045,-17.4597,0,-177.233,-8.28766,-176.33	1/1:90:0,89,0:0:0:89,0:3155,0:-283.875,-26.7917,0,-283.875,-26.7917,-283.875	1/2:15:0,6,9:0:0:6,9:214,324:-44.2404,-26.7966,-24.9904,-17.8016,0,-15.0924	1/1:15:0,15,0:0:0:15,0:534,0:-48.3941,-4.51545,0,-48.3941,-4.51545,-48.3941	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:15:0,15,0:0:0:15,0:516,0:-46.7644,-4.51545,0,-46.7644,-4.51545,-46.7644	1/2:9:0,7,2:0:0:7,2:241,72:-25.7958,-6.23466,-4.12745,-19.9175,0,-19.3154	1/2:299:0,151,147:0:0:151,147:5357,5276:-866.816,-430.363,-384.907,-436.45,0,-392.198	1/2:124:0,43,81:0:0:43,81:1516,2901:-360.374,-236.94,-223.996,-123.788,0,-99.4043	1/2:121:0,68,53:0:0:68,53:2397,1908:-351.204,-156.043,-135.573,-195.518,0,-179.563	.:.:.:.:.:.:.:.	1/2:94:0,21,73:0:0:21,73:747,2613:-274.318,-213.441,-207.119,-61.2334,0,-39.2582	1/2:61:0,35,26:0:0:35,26:1239,919:-176.122,-75.1987,-64.6627,-101.277,0,-93.4504	1/2:138:0,49,89:0:0:49,89:1739,3188:-402.034,-260.347,-245.597,-142.043,0,-115.251	1/2:123:0,54,69:0:0:54,69:1929,2480:-359.955,-202.682,-186.426,-157.631,0,-136.86	1/2:86:0,37,49:0:0:37,49:1307,1760:-250.371,-143.933,-132.795,-106.793,0,-92.0427	1/1:70:0,70,0:0:0:70,0:2486,0:-223.995,-21.0721,0,-223.995,-21.0721,-223.995	1/1:70:0,69,1:0:0:69,1:2420,36:-217.696,-20.7711,0,-214.758,-17.4738,-214.457	1/1:70:0,69,1:0:0:69,1:2426,36:-218.236,-20.7711,0,-215.298,-17.4738,-214.997	1/2:76:0,18,58:0:0:18,58:648,2075:-222.434,-169.56,-164.141,-53.2333,0,-35.7736	1/2:113:0,39,74:0:0:39,74:1377,2660:-329.371,-217.369,-205.629,-112.357,0,-90.0806	1/2:141:0,26,115:0:0:26,115:921,4107:-410.221,-335.195,-327.369,-75.3802,0,-40.7618	1/1:4:0,4,0:0:0:4,0:139,0:-12.8522,-1.20412,0,-12.8522,-1.20412,-12.8522	1/1:39:0,39,0:0:0:39,0:1386,0:-125.038,-11.7402,0,-125.038,-11.7402,-125.038	1/1:39:0,39,0:0:0:39,0:1383,0:-124.769,-11.7402,0,-124.769,-11.7402,-124.769	1/2:18:0,7,11:0:0:7,11:246,396:-52.6912,-32.6714,-30.5642,-20.3744,0,-17.063	1/2:125:0,38,87:0:0:38,87:1349,3116:-364.391,-254.477,-243.038,-110.27,0,-84.08	1/2:45:0,21,24:0:0:21,24:750,856:-131.284,-70.1364,-63.8148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chr07	4845745	.	C	T	119218	PASS	AB=0.610794;ABP=882.115;AC=54;AF=0.287234;AN=188;AO=5063;CIGAR=1X;DP=13155;DPB=13155;DPRA=1.37778;EPP=10997.2;EPPR=17572.4;GTI=8;LEN=1;MEANALT=1.01613;MQM=55.2021;MQMR=59.9609;NS=94;NUMALT=1;ODDS=0.883254;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180685;QR=287770;RO=8091;RPL=2920;RPP=261.944;RPPR=409.705;RPR=2143;RUN=1;SAF=2920;SAP=261.944;SAR=2143;SRF=4661;SRP=409.705;SRR=3430;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:17,33:17:608:33:1188:-91.7866,0,-40.0005	0/1:185:42,143:42:1504:143:5061:-399.11,0,-79.964	0/1:163:48,115:48:1688:115:4095:-318.474,0,-103.136	0/1:291:90,201:90:3203:201:7190:-556.523,0,-200.894	0/0:55:54,1:54:1899:1:36:0,-12.9584,-167.586	0/0:40:40,0:40:1400:0:0:0,-12.0412,-126.294	0/0:115:115,0:115:4065:0:0:0,-34.6184,-366.038	0/1:204:54,150:54:1940:150:5345:-418.338,0,-113.268	0/0:91:91,0:91:3244:0:0:0,-27.3937,-292.183	0/1:170:60,110:60:2151:110:3926:-301.275,0,-142.681	0/0:166:165,1:165:5920:1:36:0,-46.3731,-529.305	0/1:204:105,99:105:3711:99:3548:-257.562,0,-272.783	0/0:191:191,0:191:6834:0:0:0,-57.4967,-615.129	0/1:201:103,98:103:3673:98:3507:-254.407,0,-270.259	0/1:149:67,82:67:2383:82:2925:-217.228,0,-169.874	0/1:177:96,81:96:3423:81:2881:-205.761,0,-255.002	0/0:140:140,0:140:4991:0:0:0,-42.1442,-449.337	0/1:116:46,70:46:1639:70:2496:-188.924,0,-112.878	0/1:93:46,47:46:1648:47:1676:-122.878,0,-120.543	0/1:202:49,153:49:1756:153:5446:-428.449,0,-97.4439	0/0:117:116,1:116:4129:1:36:0,-31.6222,-368.196	0/1:141:25,115:25:862:115:4086:-324.417,0,-35.3891	0/1:136:46,90:46:1636:90:3232:-249.196,0,-106.589	0/1:123:31,92:31:1091:92:3276:-257.246,0,-61.4721	0/1:139:43,96:43:1540:96:3436:-266.568,0,-97.0481	0/0:227:222,5:222:7912:5:176:0,-52.2182,-695.974	0/0:177:177,0:177:6319:0:0:0,-53.2823,-568.785	0/0:80:80,0:80:2839:0:0:0,-24.0824,-255.748	0/1:291:62,229:62:2210:229:8190:-647.564,0,-111.564	0/0:196:188,8:188:6683:8:288:0,-32.8311,-575.374	0/0:173:171,2:171:6060:2:72:0,-45.2415,-538.671	0/1:15:6,9:6:212:9:316:-24.2634,0,-14.9093	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:14:7,7:7:252:7:252:-18.7445,0,-18.8145	0/1:510:248,262:248:8841:262:9351:-685.253,0,-642.152	0/1:220:69,151:69:2464:151:5402:-418.65,0,-155.788	0/1:183:97,86:97:3411:86:3074:-220.174,0,-252.118	1/1:1:0,1:0:0:1:36:-3.57343,-0.30103,0	0/1:208:76,132:76:2713:132:4690:-358.501,0,-181.798	0/1:95:60,35:60:2139:35:1256:-84.5543,0,-164.175	0/1:204:64,140:64:2288:140:5016:-388.395,0,-144.772	0/1:227:112,115:112:3971:115:4124:-301.72,0,-289.25	0/1:154:70,84:70:2468:84:3006:-222.789,0,-176.013	0/0:107:106,1:106:3758:1:36:0,-28.6119,-334.824	0/0:94:93,1:93:3306:1:36:0,-24.6985,-294.158	0/0:110:110,0:110:3873:0:0:0,-33.1133,-348.766	0/1:145:36,109:36:1275:109:3890:-304.924,0,-71.4029	0/1:223:75,148:75:2688:148:5291:-405.94,0,-174.904	0/1:220:46,174:46:1648:174:6235:-493.617,0,-82.3819	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:71:71,0:71:2524:0:0:0,-21.3731,-227.409	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/1:28:10,18:10:347:18:632:-48.6671,0,-23.1348	0/1:191:62,129:62:2216:129:4628:-358.112,0,-141.838	0/1:73:24,49:24:856:49:1752:-135.365,0,-55.3859	0/1:11:4,7:4:135:7:243:-18.8783,0,-9.17118	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:77:77,0:77:2728:0:0:0,-23.1793,-245.758	0/0:256:256,0:256:9119:0:0:0,-77.0637,-820.688	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:229:229,0:229:8166:0:0:0,-68.9359,-734.935	0/0:142:142,0:142:5049:0:0:0,-42.7463,-454.557	0/1:111:36,75:36:1280:75:2668:-206.232,0,-82.0889	0/0:59:58,1:58:2059:1:36:0,-14.1777,-181.998	0/1:200:73,127:73:2576:127:4522:-345.898,0,-171.883	0/1:145:49,96:49:1731:96:3428:-264.836,0,-112.377	0/1:81:47,34:47:1676:34:1207:-84.0007,0,-126.744	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:142:76,66:76:2693:66:2357:-169.13,0,-199.868	0/1:38:12,26:12:424:26:924:-71.7891,0,-27.0573	0/0:82:82,0:82:2903:0:0:0,-24.6845,-261.499	0/1:171:66,105:66:2343:105:3746:-285.312,0,-159.653	0/0:123:123,0:123:4349:0:0:0,-37.0267,-391.586	0/0:156:156,0:156:5566:0:0:0,-46.9607,-501.064	0/1:161:51,110:51:1800:110:3900:-301.599,0,-113.813	0/0:129:129,0:129:4615:0:0:0,-38.8329,-415.513	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8767	0/0:126:125,1:125:4454:1:36:0,-34.3366,-397.438	0/1:125:50,75:50:1776:75:2685:-203.694,0,-122.494	0/0:150:150,0:150:5337:0:0:0,-45.1545,-480.465	0/1:199:81,118:81:2883:118:4212:-318.221,0,-199.802	0/1:178:98,80:98:3461:80:2859:-203.101,0,-258.111	0/0:193:193,0:193:6855:0:0:0,-58.0988,-617.021	0/1:341:160,181:160:5718:181:6470:-476.971,0,-412.081	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/0:196:196,0:196:6959:0:0:0,-59.0019,-626.371	0/0:197:197,0:197:7025:0:0:0,-59.3029,-632.124	0/1:125:76,49:76:2702:49:1745:-119.056,0,-205.79	0/1:266:171,95:171:6071:95:3364:-221.821,0,-466.417	0/1:206:66,140:66:2350:140:4972:-383.329,0,-149.743	0/0:138:138,0:138:4843:0:0:0,-41.5421,-436.029	0/0:249:249,0:249:8880:0:0:0,-74.9565,-799.187
chr07	4848150	.	TA	CA	131511	PASS	AB=0.552613;ABP=107.433;AC=135;AF=0.733696;AN=184;AO=6375;CIGAR=1X1M;DP=8329;DPB=8337;DPRA=0;EPP=13802.8;EPPR=4230.87;GTI=2;LEN=1;MEANALT=1.05435;MQM=53.2058;MQMR=59.8439;NS=92;NUMALT=1;ODDS=1.11113;PAIRED=0;PAIREDR=0;PAO=8;PQA=282;PQR=0;PRO=0;QA=225704;QR=68360;RO=1947;RPL=6370;RPP=13802.8;RPPR=4230.87;RPR=5;RUN=1;SAF=6375;SAP=13846.1;SAR=0;SRF=1947;SRP=4230.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:5,7:5:180:7:252:-19.2888,0,-12.9397	0/1:87:45,42:45:1591:42:1504:-109.151,0,-117.286	0/1:58:31,27:31:1090:27:927:-66.1015,0,-80.9446	0/1:181:88,93:88:3117:93:3298:-241.405,0,-226.258	1/1:46:0,46:0:0:46:1644:-147.802,-13.8474,0	1/1:30:0,27:0:0:27:972:-87.361,-8.12781,0	1/1:140:0,140:0:0:140:4938:-442.826,-42.1442,0	0/1:111:49,62:49:1730:62:2166:-161.608,0,-122.569	1/1:37:0,37:0:0:37:1277:-115.007,-11.1381,0	0/1:114:57,57:57:2008:57:2026:-147.827,0,-146.675	1/1:103:0,103:0:0:103:3668:-329.374,-31.0061,0	0/1:83:37,46:37:1294:46:1608:-119.782,0,-91.7695	1/1:110:0,110:0:0:110:3873:-348.235,-33.1133,0	0/1:108:51,57:51:1768:57:1984:-145.972,0,-126.89	0/1:66:28,38:28:995:38:1356:-101.889,0,-69.9391	0/1:72:37,35:37:1310:35:1247:-90.7067,0,-96.5261	1/1:113:0,113:0:0:113:4013:-360.769,-34.0164,0	0/1:91:34,57:34:1185:57:2006:-153.039,0,-79.5579	0/1:51:18,33:18:624:33:1175:-90.6036,0,-41.1306	0/1:142:72,70:72:2542:70:2490:-180.908,0,-186.247	1/1:155:0,155:0:0:155:5437:-488.618,-46.6597,0	0/1:59:43,16:43:1538:16:564:-33.2159,0,-120.95	0/1:23:15,8:15:522:8:288:-19.2953,0,-40.383	0/1:50:20,30:20:701:30:1064:-80.7694,0,-48.3592	0/1:56:25,31:25:881:31:1088:-81.1165,0,-62.7495	1/1:284:0,284:0:0:284:10069:-902.906,-85.4925,0	1/1:198:0,198:0:0:198:7037:-631.969,-59.6039,0	1/1:50:0,50:0:0:50:1752:-157.775,-15.0515,0	0/1:232:117,115:117:4055:115:4050:-294.009,0,-295.228	1/1:65:1,64:1:36:64:2266:-199.633,-15.9687,0	1/1:65:0,65:0:0:65:2313:-207.903,-19.567,0	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	1/1:13:0,13:0:0:13:455:-41.2286,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.7215,-0.60206,0	1/1:5:0,5:0:0:5:180:-16.535,-1.50515,0	.:.:.:.:.:.:.:.	0/1:278:112,166:112:3943:166:5871:-443.103,0,-271.373	0/1:138:58,80:58:2038:80:2840:-213.827,0,-142.148	0/1:82:26,56:26:893:56:1977:-153.248,0,-55.9921	.:.:.:.:.:.:.:.	0/1:104:54,50:54:1902:50:1796:-129.966,0,-140.145	0/1:38:22,16:22:751:16:572:-40.3043,0,-56.4639	0/1:52:32,20:32:1129:20:716:-49.0281,0,-86.2637	0/1:68:31,37:31:1094:37:1295:-95.7274,0,-78.2974	0/1:80:29,51:29:1025:51:1808:-138.598,0,-68.4771	1/1:67:1,66:1:36:66:2335:-205.896,-16.5707,0	1/1:65:0,65:0:0:65:2300:-206.909,-19.567,0	1/1:145:0,145:0:0:145:5160:-463.167,-43.6494,0	0/1:103:46,57:46:1606:57:2012:-149.954,0,-113.819	0/1:208:82,126:82:2858:126:4499:-341.491,0,-194.841	0/1:126:55,70:55:1884:70:2489:-185.29,0,-131.856	1/1:15:0,15:0:0:15:523:-47.3181,-4.51545,0	1/1:74:0,74:0:0:74:2627:-236.034,-22.2762,0	1/1:38:0,38:0:0:38:1327:-119.456,-11.4391,0	0/1:6:4,2:4:140:2:72:-5.0235,0,-11.1386	0/1:107:52,55:52:1834:55:1950:-143.216,0,-133.124	0/1:6:5,1:5:178:1:36:-1.78524,0,-14.5625	0/1:11:4,7:4:144:7:252:-19.6597,0,-10.0023	1/1:27:0,27:0:0:27:950:-85.4657,-8.12781,0	1/1:65:0,65:0:0:65:2312:-207.874,-19.567,0	1/1:161:0,161:0:0:161:5728:-514.426,-48.4658,0	1/1:4:0,4:0:0:4:144:-13.2883,-1.20412,0	1/1:276:0,276:0:0:276:9782:-877.334,-83.0843,0	1/1:127:0,127:0:0:127:4531:-406.851,-38.2308,0	0/1:76:37,39:37:1289:39:1396:-102.765,0,-93.4272	1/1:73:0,73:0:0:73:2597:-233.258,-21.9752,0	0/1:113:49,64:49:1717:64:2284:-171.019,0,-120.791	0/1:71:44,27:44:1554:27:972:-66.2592,0,-118.77	0/1:45:17,28:17:610:28:985:-75.2735,0,-41.6865	1/1:71:0,71:0:0:71:2491:-223.888,-21.3731,0	0/1:125:49,76:49:1729:76:2688:-203.68,0,-118.265	0/1:26:11,15:11:394:15:531:-40.2074,0,-27.9747	1/1:78:0,78:0:0:78:2744:-246.856,-23.4803,0	0/1:91:25,66:25:880:66:2316:-181.089,0,-52.1206	1/1:84:0,84:0:0:84:2981:-267.855,-25.2865,0	1/1:169:0,168:0:0:168:5939:-532.538,-50.573,0	0/1:48:17,31:17:592:31:1108:-85.4877,0,-39.1531	1/1:147:0,146:0:0:146:5185:-465.694,-43.9504,0	1/1:9:0,9:0:0:9:324:-29.4755,-2.70927,0	1/1:83:1,82:1:34:82:2905:-257.675,-21.5866,0	0/1:93:36,57:36:1272:57:2044:-155.843,0,-86.7859	1/1:126:1,125:1:36:125:4415:-392.799,-34.3315,0	0/1:147:57,90:57:2012:90:3127:-235.769,0,-137.099	0/1:76:27,49:27:943:49:1715:-131.272,0,-62.2997	1/1:140:0,140:0:0:140:4975:-446.345,-42.1442,0	0/1:181:74,107:74:2584:107:3767:-283.853,0,-178.308	1/1:48:0,48:0:0:48:1701:-152.991,-14.4494,0	1/1:114:1,113:1:36:113:3974:-353.819,-30.7191,0	1/1:96:0,96:0:0:96:3433:-308.879,-28.8989,0	0/1:75:28,47:28:996:47:1639:-124.48,0,-67.3736	0/1:107:47,60:47:1644:60:2135:-159.757,0,-116.028	0/1:63:37,25:37:1308:25:900:-62.1624,0,-99.0076	1/1:151:0,151:0:0:151:5339:-478.629,-45.4555,0	1/1:117:1,116:1:36:116:4095:-363.608,-31.6222,0
chr07	4848211	.	C	T	119323	PASS	AB=0.573241;ABP=171.913;AC=131;AF=0.704301;AN=186;AO=5592;CIGAR=1X;DP=7152;DPB=7152;DPRA=39.7;EPP=11972.8;EPPR=3299.86;GTI=6;LEN=1;MEANALT=1.02222;MQM=59.9326;MQMR=60;NS=93;NUMALT=1;ODDS=1.27599;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200508;QR=55798;RO=1558;RPL=5577;RPP=12015.9;RPPR=3299.86;RPR=15;RUN=1;SAF=5;SAP=12102.5;SAR=5587;SRF=0;SRP=3386.16;SRR=1558;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:8,13:8:288:13:460:-35.4137,0,-19.9458	0/1:50:18,32:18:644:32:1152:-88.9305,0,-43.2391	0/1:173:83,90:83:2980:90:3219:-237.852,0,-216.354	0/1:225:82,143:82:2914:143:5134:-394.46,0,-194.761	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:21:0,21:0:0:21:747:-67.5543,-6.32163,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	0/1:72:24,48:24:845:48:1716:-133.043,0,-54.6929	1/1:73:0,73:0:0:73:2608:-234.968,-21.9752,0	0/1:83:38,45:38:1338:45:1605:-119.753,0,-95.7305	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:103:44,59:44:1584:59:2124:-160.422,0,-111.845	1/1:108:0,108:0:0:108:3864:-347.954,-32.5112,0	0/1:68:33,35:33:1179:35:1247:-92.0634,0,-85.9472	0/1:106:41,64:41:1476:64:2296:-174.933,0,-101.168	0/1:74:32,42:32:1144:42:1504:-113.378,0,-80.9933	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:27:8,19:8:284:19:674:-52.8152,0,-17.7755	0/1:37:12,25:12:432:25:900:-70.1829,0,-28.0831	0/1:89:45,44:45:1620:44:1584:-116.06,0,-119.298	1/1:185:0,185:0:0:185:6636:-597.312,-55.6906,0	0/1:55:34,21:34:1205:21:752:-51.4496,0,-92.1972	0/1:75:36,39:36:1292:39:1404:-104.08,0,-94.0065	0/1:25:5,19:5:180:19:684:-54.3058,0,-8.96752	0/1:32:13,19:13:464:19:669:-50.901,0,-32.4645	1/1:212:0,212:0:0:212:7603:-684.302,-63.8184,0	1/1:197:0,197:0:0:197:7069:-636.268,-59.3029,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:224:100,124:100:3596:124:4452:-333.418,0,-256.414	1/1:94:2,92:2:72:92:3304:-290.612,-21.4601,0	1/1:83:0,83:0:0:83:2971:-267.62,-24.9855,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:230:109,121:109:3920:121:4348:-322.2,0,-283.754	0/1:59:22,37:22:788:37:1332:-102.422,0,-53.484	0/1:46:12,34:12:432:34:1220:-96.2594,0,-25.3738	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:67:26,41:26:936:41:1472:-112.607,0,-64.3905	0/1:26:10,16:10:360:16:576:-44.3482,0,-24.9175	0/1:90:40,50:40:1425:50:1796:-134.83,0,-101.453	0/1:67:35,32:35:1256:32:1148:-83.4608,0,-93.1763	0/1:63:30,33:30:1072:33:1180:-87.4982,0,-77.8276	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:78:0,78:0:0:78:2775:-249.98,-23.4803,0	1/1:113:0,113:0:0:113:4028:-362.706,-34.0164,0	0/1:63:25,38:25:900:38:1368:-104.456,0,-62.3561	0/1:82:31,51:31:1108:51:1832:-140.476,0,-75.3465	0/1:68:27,41:27:959:41:1476:-112.666,0,-66.1554	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:94:0,94:0:0:94:3372:-303.691,-28.2968,0	1/1:60:0,60:0:0:60:2145:-193.298,-18.0618,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:104:33,71:33:1180:71:2548:-198.263,0,-75.2009	0/1:23:6,17:6:216:17:612:-48.4897,0,-12.8668	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	1/1:13:0,13:0:0:13:468:-42.4587,-3.91339,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:122:0,122:0:0:122:4392:-395.45,-36.7257,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:219:1,218:1:36:218:7810:-699.271,-62.3273,0	1/1:107:2,105:2:72:105:3761:-331.851,-25.3735,0	0/1:49:11,38:11:396:38:1368:-108.67,0,-21.2323	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	0/1:99:49,50:49:1737:50:1783:-130.945,0,-126.811	0/1:104:53,51:53:1904:51:1836:-134.214,0,-140.331	0/1:46:15,31:15:540:31:1097:-85.1906,0,-35.0892	1/1:48:0,48:0:0:48:1724:-155.41,-14.4494,0	0/1:29:11,18:11:396:18:644:-49.5607,0,-27.2529	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	1/1:99:1,98:1:36:98:3512:-312.692,-26.2037,0	0/1:75:30,45:30:1072:45:1612:-122.793,0,-74.2152	1/1:104:0,104:0:0:104:3740:-336.799,-31.3071,0	1/1:149:0,149:0:0:149:5314:-478.393,-44.8535,0	0/1:51:20,31:20:712:31:1083:-82.4173,0,-49.0541	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:11:0,11:0:0:11:396:-35.9818,-3.31133,0	1/1:98:0,98:0:0:98:3520:-317.009,-29.5009,0	0/1:100:46,54:46:1648:54:1940:-144.773,0,-118.506	1/1:166:0,166:0:0:166:5952:-535.697,-49.971,0	0/1:59:20,39:20:720:39:1400:-108.536,0,-47.368	0/1:96:41,55:41:1472:55:1980:-149.556,0,-103.877	1/1:75:0,75:0:0:75:2692:-242.434,-22.5773,0	0/1:151:79,72:79:2832:72:2588:-187.668,0,-209.663	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:89:0,89:0:0:89:3202:-288.398,-26.7917,0	1/1:98:0,98:0:0:98:3524:-317.368,-29.5009,0	0/1:32:14,18:14:504:18:648:-49.0189,0,-36.0651	0/1:90:39,51:39:1404:51:1832:-138.068,0,-99.5666	0/1:69:43,26:43:1544:26:929:-63.1206,0,-118.482	1/1:125:0,125:0:0:125:4462:-401.732,-37.6288,0	1/1:144:1,143:1:36:143:5144:-459.497,-39.75,0
chr07	4894970	.	C	T	30402.2	PASS	AB=0.601253;ABP=258.936;AC=51;AF=0.274194;AN=186;AO=1745;CIGAR=1X;DP=4936;DPB=4936;DPRA=1.2838;EPP=3748.92;EPPR=6895.31;GTI=4;LEN=1;MEANALT=1;MQM=59.941;MQMR=59.995;NS=93;NUMALT=1;ODDS=1.16112;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61795;QR=113906;RO=3190;RPL=1741;RPP=3757.57;RPPR=6895.31;RPR=4;RUN=1;SAF=1;SAP=3783.55;SAR=1744;SRF=0;SRP=6930.01;SRR=3190;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:19,31:19:684:31:1096:-83.8984,0,-46.8388	0/1:29:8,21:8:288:21:745:-58.536,0,-17.5375	0/1:74:29,45:29:1036:45:1605:-122.462,0,-71.2777	0/1:155:64,91:64:2269:91:3221:-243.452,0,-157.812	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.2929	0/0:24:24,0:24:837:0:0:0,-7.22472,-75.6456	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.554	0/1:56:24,32:24:860:32:1134:-85.5108,0,-60.8642	0/0:67:67,0:67:2385:0:0:0,-20.169,-214.906	0/1:45:6,39:6:212:39:1343:-107.615,0,-5.87845	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:50:23,27:23:805:27:950:-70.7616,0,-57.716	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:48:19,29:19:684:29:1024:-77.9858,0,-47.4409	0/1:49:21,28:21:752:28:1008:-76.2859,0,-53.2558	0/1:44:27,17:27:949:17:612:-42.1681,0,-72.4775	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:103:31,72:31:1116:72:2513:-195.412,0,-69.7456	0/0:97:97,0:97:3461:0:0:0,-29.1999,-311.701	0/1:73:13,60:13:468:60:2126:-169.63,0,-20.4845	0/1:86:28,58:28:1004:58:2079:-161.491,0,-64.7873	0/1:29:19,10:19:654:10:356:-23.6514,0,-50.4477	0/1:71:25,46:25:896:46:1625:-125.163,0,-59.5872	0/0:119:118,1:118:4214:1:36:0,-32.2243,-375.839	0/0:152:152,0:152:5433:0:0:0,-45.7566,-489.098	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:128:65,63:65:2328:63:2226:-162.069,0,-171.248	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:69:69,0:69:2469:0:0:0,-20.7711,-222.462	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:106:46,60:46:1652:60:2129:-159.968,0,-117.059	0/1:92:36,56:36:1292:56:1955:-148.525,0,-88.889	0/1:39:14,25:14:504:25:900:-69.5808,0,-33.9579	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:46:30,16:30:1072:16:572:-37.966,0,-82.9451	0/1:31:12,19:12:420:19:670:-51.2934,0,-28.8021	0/1:86:36,50:36:1292:50:1784:-134.954,0,-90.6952	0/1:25:11,14:11:381:14:500:-37.8081,0,-27.0949	0/1:30:13,17:13:464:17:612:-46.3825,0,-33.0666	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:71:71,0:71:2510:0:0:0,-21.3731,-226.15	0/1:74:33,41:33:1173:41:1457:-109.148,0,-83.5993	0/1:50:19,31:19:676:31:1100:-84.2582,0,-46.1165	0/1:102:28,74:28:1004:74:2629:-206.151,0,-59.9708	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:97:41,56:41:1472:56:1994:-150.534,0,-103.576	0/1:28:14,14:14:500:14:504:-37.2693,0,-36.9073	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:75:73,2:73:2600:2:72:0,-15.7405,-227.41	.:.:.:.:.:.:.:.	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:61:58,3:58:2084:3:108:0,-8.28766,-177.755	0/1:66:27,39:27:972:39:1396:-106.071,0,-67.9299	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:107:52,55:52:1853:55:1922:-141.04,0,-134.838	0/1:161:34,127:34:1182:127:4458:-352.918,0,-58.2147	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:42:7,35:7:252:35:1245:-99.7094,0,-10.3857	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/1:54:24,30:24:864:30:1080:-81.2576,0,-61.8269	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:55:30,25:30:1061:25:848:-60.0617,0,-79.2427	0/0:27:26,1:26:932:1:36:0,-4.52953,-80.6006	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:44:43,1:43:1548:1:36:0,-9.64704,-136.015	0/1:66:36,30:36:1292:30:1057:-75.571,0,-96.7158	0/0:62:61,0:61:2196:0:0:0,-18.3628,-197.662	0/1:24:12,12:12:413:12:412:-30.1832,0,-30.2731	0/1:53:29,24:29:1036:24:850:-60.8645,0,-77.5993	0/0:31:31,0:31:1078:0:0:0,-9.33193,-97.3243	0/1:66:34,32:34:1200:32:1118:-81.0405,0,-88.4349	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:40:19,21:19:669:21:752:-55.9651,0,-48.4927	0/1:77:24,53:24:860:53:1896:-147.739,0,-54.5425	0/1:60:15,45:15:540:45:1596:-125.868,0,-30.8747	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/0:61:61,0:61:2147:0:0:0,-18.3628,-193.493
chr07	4894983	.	GACA	CACA	63837.6	PASS	AB=0.394611;ABP=285.868;AC=135;AF=0.725806;AN=186;AO=3192;CIGAR=1X3M;DP=4998;DPB=4998.75;DPRA=6.02536;EPP=6934.35;EPPR=3863.89;GTI=4;LEN=1;MEANALT=1.21739;MQM=59.9912;MQMR=59.9439;NS=93;NUMALT=1;ODDS=0.503303;PAIRED=0;PAIREDR=0;PAO=1.5;PQA=54;PQR=0;PRO=0;QA=113921;QR=63438;RO=1782;RPL=3192;RPP=6934.35;RPPR=3872.57;RPR=0;RUN=1;SAF=0;SAP=6934.35;SAR=3192;SRF=1;SRP=3863.89;SRR=1781;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:29,19:29:1040:19:669:-45.7251,0,-79.1054	0/1:30:22,8:22:781:8:288:-17.2365,0,-60.9524	0/1:76:48,27:48:1688:27:968:-64.5003,0,-129.268	0/1:156:92,63:92:3289:63:2249:-155.652,0,-249.21	1/1:28:0,28:0:0:28:977:-88.2405,-8.42884,0	1/1:23:0,23:0:0:23:805:-72.7099,-6.92369,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	0/1:57:31,26:31:1110:26:921:-66.0465,0,-83.0524	1/1:68:0,68:0:0:68:2417:-217.785,-20.47,0	0/1:45:39,6:39:1378:6:216:-6.24416,0,-110.772	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:52:29,23:29:1035:23:828:-59.1906,0,-77.81	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:49:29,20:29:1034:20:720:-50.3783,0,-78.5671	0/1:50:28,22:28:1006:22:788:-56.1933,0,-75.8048	0/1:47:19,28:19:680:28:978:-74.1811,0,-47.3808	1/1:23:0,22:0:0:22:773:-69.53,-6.62266,0	0/1:23:16,7:16:564:7:252:-16.1053,0,-44.1656	1/1:25:0,25:0:0:25:896:-80.9245,-7.52575,0	0/1:104:74,30:74:2634:30:1072:-65.4272,0,-205.941	1/1:99:0,98:0:0:98:3497:-314.679,-29.5009,0	0/1:74:60,14:60:2150:14:504:-23.4195,0,-171.492	0/1:89:60,29:60:2138:29:1044:-67.4831,0,-165.896	0/1:29:10,19:10:360:19:646:-49.7254,0,-24.0144	0/1:71:47,23:47:1680:23:813:-52.0583,0,-130.055	1/1:118:2,115:2:72:115:4117:-363.876,-28.7436,0	1/1:151:0,150:0:0:150:5326:-479.221,-45.1545,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:129:64,65:64:2286:65:2321:-170.316,0,-167.169	1/1:62:0,61:0:0:61:2169:-195.194,-18.3628,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:6:4,2:4:143:2:72:-5.03054,0,-11.4153	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:108:62,46:62:2220:46:1648:-116.097,0,-167.552	0/1:96:59,37:59:2106:37:1332:-91.2835,0,-160.91	0/1:42:27,14:27:959:14:504:-32.996,0,-73.9236	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:47:16,31:16:567:31:1112:-86.2429,0,-37.2128	0/1:32:19,13:19:669:13:459:-32.0111,0,-50.9026	0/1:85:50,34:50:1775:34:1220:-84.4605,0,-134.386	0/1:25:14,11:14:499:11:392:-28.0943,0,-37.719	0/1:32:17,15:17:610:15:540:-39.3036,0,-45.5999	1/1:62:0,62:0:0:62:2208:-198.985,-18.6639,0	1/1:55:0,53:0:0:53:1889:-169.97,-15.9546,0	1/1:72:0,72:0:0:72:2561:-230.739,-21.6742,0	0/1:77:42,35:42:1477:35:1252:-89.8058,0,-110.044	0/1:51:32,19:32:1145:19:661:-44.4591,0,-88.0071	0/1:102:74,28:74:2642:28:1008:-60.3313,0,-207.322	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:42:0,41:0:0:41:1476:-132.718,-12.3422,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:99:57,42:57:2040:42:1481:-103.781,0,-154.071	0/1:28:14,14:14:497:14:485:-35.5481,0,-36.6355	0/0:9:9,0:9:321:0:0:0,-2.70927,-29.2335	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:74:2,72:2:59:72:2580:-226.845,-16.672,0	.:.:.:.:.:.:.:.	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	1/1:63:3,60:3:107:60:2141:-182.974,-8.98272,0	0/1:69:41,26:41:1455:26:936:-64.0306,0,-110.717	1/1:61:0,61:0:0:61:2162:-194.843,-18.3628,0	0/1:107:54,52:54:1914:52:1864:-135.77,0,-140.268	0/1:168:135,33:135:4805:33:1180:-55.935,0,-382.017	0/1:27:16,11:16:566:11:392:-27.4922,0,-43.1433	1/1:41:0,41:0:0:41:1449:-130.704,-12.3422,0	0/1:44:37,7:37:1309:7:252:-9.78364,0,-104.865	0/1:26:12,13:12:421:13:468:-34.6389,0,-30.4039	1/1:83:0,83:0:0:83:2950:-265.731,-24.9855,0	0/1:56:30,26:30:1079:26:932:-67.3412,0,-80.5656	1/1:84:0,84:0:0:84:3011:-271.221,-25.2865,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:56:26,30:26:925:30:1076:-80.2952,0,-66.707	1/1:27:2,25:2:61:25:877:-73.452,-2.33458,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:66:30,36:30:1055:36:1292:-96.7158,0,-75.3919	1/1:61:0,57:0:0:57:2033:-182.881,-17.1587,0	0/1:26:12,14:12:424:14:496:-37.1429,0,-30.6696	0/1:55:25,30:25:882:30:1061:-79.2427,0,-63.1402	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:66:31,35:31:1088:35:1245:-92.4847,0,-78.3452	1/1:14:0,14:0:0:14:489:-44.3389,-4.21442,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:40:21,19:21:754:19:684:-49.8491,0,-56.1457	0/1:77:53,24:53:1899:24:845:-53.1878,0,-148.009	0/1:61:45,15:45:1608:15:536:-30.1534,0,-126.589	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:58:0,57:0:0:57:2036:-183.152,-17.1587,0
chr07	4920033	.	TT	TC,CC	234415	PASS	AB=0.501779,0.497174;ABP=3.14167,3.34168;AC=132,54;AF=0.709677,0.290323;AN=186;AO=6321,2400;CIGAR=1M1X,2X;DP=8728;DPB=8728;DPRA=36.3333,1.12029;EPP=584.475,35.6729;EPPR=9.52472;GTI=1;LEN=1,2;MEANALT=1.66667,1.98333;MQM=53.9275,54.1142;MQMR=55.6667;NS=93;NUMALT=2;ODDS=2.62028;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=224936,83962;QR=108;RO=3;RPL=12,4;RPP=13624.9,5179.86;RPPR=9.52472;RPR=6309,2396;RUN=1,1;SAF=2522,1109;SAP=563.22,32.9802;SAR=3799,1291;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,20,22:0:0:20,22:712,788:-122.057,-64.4427,-58.4221,-57.9698,0,-51.3471	1/2:143:0,77,66:0:0:77,66:2740,2347:-410.902,-188.756,-165.577,-222.498,0,-202.63	1/2:94:0,47,47:0:0:47,47:1684,1649:-270.579,-133.812,-119.663,-137.12,0,-122.971	1/2:123:0,61,60:0:0:61,60:2175,2110:-348.04,-171.152,-152.789,-176.958,0,-158.896	1/1:65:0,65,0:0:0:65,0:2321,0:-208.779,-19.567,0,-208.779,-19.567,-208.779	1/1:46:0,46,0:0:0:46,0:1636,0:-146.703,-13.8474,0,-146.703,-13.8474,-146.703	1/1:89:0,89,0:0:0:89,0:3166,0:-283.835,-26.7917,0,-283.835,-26.7917,-283.835	1/2:127:0,61,65:0:0:61,65:2154,2319:-363.209,-188.418,-170.056,-174.891,0,-155.324	1/1:107:0,107,0:0:0:107,0:3791,0:-340.215,-32.2102,0,-340.215,-32.2102,-340.215	1/2:75:0,41,34:0:0:41,34:1459,1179:-214.475,-95.7395,-83.3973,-119.085,0,-108.85	1/1:103:0,103,0:0:0:103,0:3678,0:-330.505,-31.0061,0,-330.505,-31.0061,-330.505	1/2:135:0,70,65:0:0:70,65:2496,2270:-385.229,-183.665,-162.593,-201.913,0,-182.346	1/1:143:0,142,1:0:0:142,1:5031,34:-450.205,-42.7463,0,-447.577,-39.7928,-447.276	1/2:169:0,83,86:0:0:83,86:2945,3034:-486.548,-246.961,-221.975,-239.94,0,-214.052	1/2:105:0,61,44:0:0:61,44:2171,1564:-303.21,-127.453,-109.09,-176.112,0,-162.866	1/2:131:0,76,55:0:0:76,55:2728,1926:-378.538,-156.757,-133.878,-222.135,0,-205.578	1/1:121:0,120,1:0:0:120,1:4278,36:-382.717,-36.1236,0,-379.969,-33.037,-379.668	1/2:91:0,40,51:0:0:40,51:1428,1784:-260.335,-144.583,-132.542,-116.103,0,-100.751	1/1:88:0,88,0:0:0:88,0:3135,0:-280.67,-26.4906,0,-280.67,-26.4906,-280.67	1/2:131:0,71,60:0:0:71,60:2522,2110:-376.967,-171.794,-150.421,-205.526,0,-187.464	1/1:167:0,167,0:0:0:167,0:5927,0:-531.755,-50.272,0,-531.755,-50.272,-531.755	1/2:31:0,15,16:0:0:15,16:528,547:-87.6963,-44.7222,-40.2068,-43.3209,0,-38.5045	1/2:67:0,40,27:0:0:40,27:1436,959:-195.259,-78.3851,-66.3439,-117.23,0,-109.102	1/2:102:0,62,40:0:0:62,40:2220,1403:-294.12,-113.727,-95.0628,-180.745,0,-168.704	1/2:59:0,33,26:0:0:33,26:1188,929:-172.349,-75.9439,-66.0099,-96.7619,0,-88.9351	1/1:183:0,183,0:0:0:183,0:6480,0:-582.341,-55.0885,0,-582.341,-55.0885,-582.341	1/1:171:1,170,0:1:36:170,0:6048,0:-538.66,-47.9093,0,-538.961,-51.1751,-541.87	1/1:62:0,61,0:0:0:61,0:2171,0:-194.713,-18.3628,0,-194.713,-18.3628,-194.713	1/2:171:0,88,83:0:0:88,83:3125,2911:-491.199,-237.098,-210.608,-254.453,0,-229.467	1/1:75:0,68,7:0:0:68,7:2427,239:-218.022,-20.47,0,-198.665,-0.770802,-196.558	1/1:114:0,113,1:0:0:113,1:4047,36:-363.526,-34.0164,0,-360.675,-30.8147,-360.374	1/2:8:0,5,3:0:0:5,3:180,108:-23.8219,-9.15779,-7.65264,-15.0234,0,-14.1204	1/1:7:0,7,0:0:0:7,0:244,0:-22.2724,-2.10721,0,-22.2724,-2.10721,-22.2724	1/1:8:0,8,0:0:0:8,0:288,0:-25.1988,-2.40824,0,-25.1988,-2.40824,-25.1988	1/1:13:0,13,0:0:0:13,0:468,0:-42.3473,-3.91339,0,-42.3473,-3.91339,-42.3473	2/2:5:0,0,5:0:0:0,5:0,180:-16.5105,-16.5105,-16.5105,-1.50515,-1.50515,0	1/2:290:0,134,156:0:0:134,156:4776,5495:-836.382,-447.413,-407.075,-389.323,0,-342.362	1/2:47:0,26,21:0:0:26,21:932,717:-134.129,-58.3549,-50.5281,-76.1225,0,-69.8008	1/2:114:0,46,68:0:0:46,68:1612,2349:-319.428,-188.87,-175.022,-130.904,0,-110.434	2/2:1:0,0,1:0:0:0,1:0,36:-3.59317,-3.59317,-3.59317,-0.30103,-0.30103,0	1/2:90:0,42,48:0:0:42,48:1486,1695:-258.488,-137.639,-124.996,-121.202,0,-106.752	1/2:72:1,29,42:1:36:29,42:1032,1453:-198.067,-114.645,-108.853,-80.7752,0,-71.0696	1/2:130:0,58,72:0:0:58,72:2050,2498:-369.454,-202.747,-185.287,-167.056,0,-145.382	1/2:139:0,68,71:0:0:68,71:2413,2496:-399.31,-202.972,-182.502,-196.69,0,-175.317	1/2:101:0,44,57:0:0:44,57:1533,1998:-287.237,-162.801,-149.556,-124.785,0,-107.626	1/1:77:0,77,0:0:0:77,0:2760,0:-248.294,-23.1793,0,-248.294,-23.1793,-248.294	1/1:71:0,71,0:0:0:71,0:2548,0:-228.751,-21.3731,0,-228.751,-21.3731,-228.751	1/1:96:0,96,0:0:0:96,0:3436,0:-309.097,-28.8989,0,-309.097,-28.8989,-309.097	1/2:58:0,30,28:0:0:30,28:1076,974:-166.707,-79.2577,-70.2268,-87.8011,0,-79.3722	1/2:91:0,47,44:0:0:47,44:1671,1540:-261.247,-125.549,-111.401,-136.049,0,-122.804	1/2:104:0,64,40:0:0:64,40:2283,1405:-300.441,-114.607,-95.3416,-186.187,0,-174.145	.:.:.:.:.:.:.:.	1/1:79:0,79,0:0:0:79,0:2819,0:-252.928,-23.7814,0,-252.928,-23.7814,-252.928	1/1:67:0,67,0:0:0:67,0:2371,0:-213.496,-20.169,0,-213.496,-20.169,-213.496	1/2:8:0,7,1:0:0:7,1:248,36:-23.434,-3.2882,-1.18099,-20.504,0,-20.203	1/2:83:0,43,40:0:0:43,40:1536,1400:-237.797,-113.264,-100.32,-124.884,0,-112.843	1/2:40:0,14,26:0:0:14,26:504,917:-115.802,-74.8756,-70.6612,-41.282,0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chr07	4920041	.	A	G	173360	PASS	AB=0.503873;ABP=3.6326;AC=132;AF=0.709677;AN=186;AO=6353;CIGAR=1X;DP=8745;DPB=8745;DPRA=32.3556;EPP=1980.01;EPPR=311.693;GTI=1;LEN=1;MEANALT=1.01111;MQM=53.9029;MQMR=54.1899;NS=93;NUMALT=1;ODDS=2.28534;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225891;QR=85694;RO=2391;RPL=539;RPP=9513.88;RPPR=3588.68;RPR=5814;RUN=1;SAF=2511;SAP=608.535;SAR=3842;SRF=1104;SRP=33.4245;SRR=1287;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:22,21:22:783:21:744:-53.9117,0,-57.6702	0/1:143:64,79:64:2304:79:2808:-208.736,0,-162.544	0/1:96:48,48:48:1724:48:1707:-124.536,0,-125.96	0/1:125:62,63:62:2232:63:2251:-164.877,0,-162.701	1/1:64:0,64:0:0:64:2281:-205.208,-19.2659,0	1/1:43:0,43:0:0:43:1540:-138.089,-12.9443,0	1/1:88:0,88:0:0:88:3136:-281.14,-26.4906,0	0/1:125:66,59:66:2361:59:2065:-147.466,0,-174.365	1/1:103:0,103:0:0:103:3691:-331.298,-31.0061,0	0/1:76:33,43:33:1188:43:1536:-115.246,0,-83.2938	1/1:106:0,106:0:0:106:3732:-335.391,-31.9092,0	0/1:136:65,71:65:2324:71:2488:-181.388,0,-167.057	1/1:139:0,139:0:0:139:4954:-443.528,-41.8432,0	0/1:171:85,86:85:3033:86:3050:-222.876,0,-221.217	0/1:103:44,59:44:1567:59:2099:-157.272,0,-110.01	0/1:136:56,80:56:2007:80:2854:-215.214,0,-139.577	1/1:120:0,120:0:0:120:4277:-382.929,-36.1236,0	0/1:92:53,39:53:1908:39:1388:-96.9396,0,-142.995	1/1:87:0,87:0:0:87:3080:-276.114,-26.1896,0	0/1:131:60,71:60:2143:71:2548:-189.791,0,-153.29	1/1:173:0,173:0:0:173:6139:-550.861,-52.0782,0	0/1:32:17,15:17:612:15:536:-38.9236,0,-45.7598	0/1:66:27,39:27:959:39:1385:-104.819,0,-66.6021	0/1:102:39,63:39:1404:63:2249:-171.305,0,-95.0006	0/1:61:25,36:25:896:36:1255:-94.3575,0,-62.4432	1/1:188:0,188:0:0:188:6671:-599.571,-56.5936,0	1/1:169:0,169:0:0:169:6035:-540.98,-50.8741,0	1/1:60:0,60:0:0:60:2148:-193.066,-18.0618,0	0/1:170:82,88:82:2933:88:3137:-230.971,0,-212.875	1/1:78:7,71:7:252:71:2502:-202.221,-0.586872,0	1/1:115:0,115:0:0:115:4083:-367.05,-34.6185,0	0/1:7:3,4:3:108:4:129:-9.80614,0,-7.95367	1/1:7:0,7:0:0:7:248:-22.6343,-2.10721,0	1/1:8:0,8:0:0:8:284:-24.8397,-2.40824,0	1/1:13:0,13:0:0:13:468:-42.3473,-3.91339,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7408	0/1:294:158,136:158:5676:136:4857:-348.434,0,-422.121	0/1:48:21,27:21:748:27:941:-70.2039,0,-53.0959	0/1:115:68,47:68:2444:47:1664:-114.806,0,-183.138	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/1:89:47,42:47:1688:42:1512:-109.381,0,-124.496	0/1:72:43,29:43:1544:29:1031:-71.0358,0,-117.077	0/1:128:70,58:70:2500:58:2069:-147.679,0,-185.907	0/1:141:72,69:72:2583:69:2456:-178.586,0,-189.681	0/1:96:57,38:57:2048:38:1347:-92.5408,0,-155.679	1/1:80:0,80:0:0:80:2836:-254.981,-24.0824,0	1/1:68:0,68:0:0:68:2423:-217.544,-20.47,0	1/1:96:0,96:0:0:96:3408:-306.624,-28.8989,0	0/1:58:28,30:28:1000:30:1048:-76.9247,0,-72.4218	0/1:93:44,49:44:1580:49:1755:-129.748,0,-114.386	0/1:103:40,63:40:1440:63:2236:-170.222,0,-98.7413	.:.:.:.:.:.:.:.	1/1:81:0,81:0:0:81:2908:-260.539,-24.3834,0	1/1:68:0,68:0:0:68:2389:-215.094,-20.47,0	0/1:9:1,8:1:36:8:288:-23.4921,0,-0.879958	0/1:81:40,41:40:1436:41:1464:-106.982,0,-103.857	0/1:40:26,14:26:932:14:495:-32.6422,0,-72.0118	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82717	1/1:6:0,6:0:0:6:216:-19.726,-1.80618,0	1/1:91:1,90:1:36:90:3213:-285.182,-23.9392,0	1/1:136:2,134:2:72:134:4781:-422.095,-34.1083,0	0/1:3:2,1:2:72:1:36:-2.69259,0,-5.9287	1/1:93:0,93:0:0:93:3300:-296.755,-27.9958,0	1/1:137:2,135:2:72:135:4807:-425.096,-34.4093,0	0/1:70:31,39:31:1116:39:1388:-103.603,0,-79.52	1/1:34:0,34:0:0:34:1205:-108.674,-10.235,0	0/1:122:57,65:57:2052:65:2295:-169.709,0,-148.08	0/1:80:39,41:39:1387:41:1472:-108.078,0,-100.652	0/1:78:35,43:35:1252:43:1516:-112.813,0,-89.2163	1/1:73:0,73:0:0:73:2568:-228.578,-21.9752,0	0/1:133:68,65:68:2440:65:2305:-167.388,0,-179.423	0/1:19:10,9:10:360:9:316:-23.0047,0,-26.9943	1/1:34:0,34:0:0:34:1224:-110.189,-10.235,0	0/1:52:24,28:24:864:28:1004:-74.6106,0,-62.2271	1/1:188:0,188:0:0:188:6680:-597.775,-56.5936,0	1/1:128:0,128:0:0:128:4554:-409.581,-38.5318,0	0/1:82:34,48:34:1224:48:1711:-128.849,0,-84.8559	1/1:90:0,90:0:0:90:3214:-288.403,-27.0927,0	1/1:12:0,12:0:0:12:428:-38.7651,-3.61236,0	1/1:78:0,78:0:0:78:2772:-249.096,-23.4803,0	0/1:67:27,40:27:968:40:1440:-109.41,0,-67.0561	1/1:144:1,143:1:36:143:5094:-454.331,-39.7526,0	0/1:173:91,82:91:3272:82:2925:-210.883,0,-241.55	0/1:123:66,57:66:2372:57:2040:-146.548,0,-176.39	1/1:139:0,139:0:0:139:4970:-445.976,-41.8432,0	0/1:225:107,118:107:3831:118:4208:-309.79,0,-276.448	1/1:63:0,63:0:0:63:2245:-200.212,-18.9649,0	1/1:118:0,118:0:0:118:4162:-371.913,-35.5215,0	1/1:117:0,117:0:0:117:4132:-369.554,-35.2205,0	0/1:114:62,52:62:2191:52:1852:-131.288,0,-162.46	0/1:148:80,68:80:2860:68:2399:-170.892,0,-212.349	0/1:106:70,36:70:2500:36:1292:-84.5078,0,-192.214	1/1:121:0,121:0:0:121:4274:-383.494,-36.4246,0	1/1:203:0,203:0:0:203:7228:-649.561,-61.1091,0
chr07	4973719	.	C	A	31605.5	PASS	AB=0.486079;ABP=9.60015;AC=51;AF=0.271277;AN=188;AO=1920;CIGAR=1X;DP=7590;DPB=7590;DPRA=1.00717;EPP=4172.24;EPPR=12232.9;GTI=1;LEN=1;MEANALT=1;MQM=59.9521;MQMR=59.9704;NS=94;NUMALT=1;ODDS=1.7124;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68661;QR=202266;RO=5668;RPL=0;RPP=4172.24;RPPR=12232.9;RPR=1920;RUN=1;SAF=1920;SAP=4172.24;SAR=0;SRF=5668;SRP=12310.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:9,18:9:320:18:644:-50.1624,0,-21.0145	0/1:129:75,54:75:2670:54:1932:-135.316,0,-201.712	0/1:130:71,59:71:2552:59:2124:-152.294,0,-190.796	0/1:126:58,68:58:2067:68:2444:-182.285,0,-148.371	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:111:111,0:111:3948:0:0:0,-33.4143,-355.498	0/1:91:60,31:60:2160:31:1116:-73.358,0,-167.273	0/0:116:116,0:116:4124:0:0:0,-34.9195,-371.347	0/1:93:49,44:49:1751:44:1584:-114.856,0,-129.878	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.786	0/1:83:43,40:43:1511:40:1432:-104.192,0,-111.297	0/0:66:66,0:66:2339:0:0:0,-19.868,-210.77	0/1:77:32,45:32:1139:45:1607:-121.74,0,-79.4114	0/1:60:20,40:20:716:40:1432:-111.116,0,-46.7059	0/1:61:33,28:33:1175:28:996:-71.5921,0,-87.6941	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/1:48:23,25:23:816:25:900:-66.8716,0,-59.3123	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:183:101,82:101:3599:82:2913:-207.316,0,-269.026	0/0:154:154,0:154:5488:0:0:0,-46.3586,-494.05	0/1:53:19,34:19:680:34:1209:-93.1595,0,-45.5746	0/1:64:35,29:35:1232:29:1017:-72.5657,0,-91.9181	0/1:91:52,39:52:1864:39:1394:-98.3639,0,-140.646	0/1:70:39,31:39:1400:31:1112:-79.3192,0,-105.227	0/0:196:195,0:195:6972:0:0:0,-58.7008,-626.816	0/0:201:200,0:200:7155:0:0:0,-60.206,-643.647	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:226:113,113:113:4040:113:4036:-295.395,0,-295.756	0/0:86:82,4:82:2920:4:144:0,-12.575,-249.722	0/0:92:91,1:91:3239:1:36:0,-24.0965,-288.134	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:173:81,92:81:2900:92:3289:-244.149,0,-209.158	0/1:75:41,34:41:1464:34:1220:-87.5296,0,-109.479	0/1:65:32,33:32:1140:33:1188:-87.6616,0,-83.3423	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:148:62,86:62:2200:86:3084:-233.235,0,-153.713	0/1:39:21,18:21:752:18:648:-46.9117,0,-56.2661	0/1:144:65,79:65:2311:79:2819:-210.595,0,-164.898	0/1:67:46,21:46:1631:21:752:-47.7068,0,-126.909	0/1:37:20,17:20:711:17:604:-43.524,0,-53.1775	0/0:79:77,2:77:2728:2:72:0,-16.9446,-238.927	0/0:103:103,0:103:3676:0:0:0,-31.0061,-331.044	0/0:108:108,0:108:3848:0:0:0,-32.5112,-346.518	0/1:59:32,27:32:1140:27:964:-69.3159,0,-85.1484	0/1:87:58,29:58:2068:29:1044:-68.0852,0,-160.201	0/1:119:59,60:59:2116:60:2160:-158.844,0,-154.886	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:81:81,0:81:2894:0:0:0,-24.3834,-260.695	0/0:25:24,1:24:856:1:36:0,-3.92747,-73.7628	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:96:46,50:46:1648:50:1796:-133.023,0,-119.699	0/1:34:20,14:20:704:14:500:-35.1012,0,-53.4495	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:94:94,0:94:3344:0:0:0,-28.2968,-301.179	0/0:102:101,1:101:3602:1:36:0,-27.1068,-320.788	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:119:118,1:118:4200:1:36:0,-32.2243,-374.585	0/1:65:37,28:37:1312:28:1004:-71.1089,0,-98.8065	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/1:131:65,66:65:2312:66:2364:-173.583,0,-168.906	0/1:81:26,55:26:936:55:1972:-153.371,0,-60.176	0/1:22:11,11:11:392:11:381:-27.998,0,-28.9974	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/1:59:31,28:31:1099:28:1000:-72.5546,0,-81.4587	0/1:22:17,5:17:608:5:180:-9.9294,0,-48.4294	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/1:82:47,35:47:1675:35:1229:-86.2271,0,-126.352	0/0:151:151,0:151:5391:0:0:0,-45.4555,-485.294	0/0:117:117,0:117:4200:0:0:0,-35.2205,-377.752	0/1:83:50,33:50:1792:33:1176:-81.1621,0,-136.577	0/0:74:73,1:73:2592:1:36:0,-18.6779,-229.155	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:132:132,0:132:4707:0:0:0,-39.736,-423.791	0/1:149:71,78:71:2527:78:2767:-204.399,0,-182.828	0/0:159:159,0:159:5672:0:0:0,-47.8638,-510.602	0/1:106:54,52:54:1936:52:1868:-136.49,0,-142.607	0/1:43:21,22:21:756:22:792:-58.6614,0,-55.4229	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/1:131:77,54:77:2751:54:1925:-134.09,0,-208.397	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:73:72,1:72:2572:1:36:0,-18.3769,-228.131	0/1:29:17,12:17:604:12:428:-30.1289,0,-45.9607	0/1:91:47,44:47:1688:44:1580:-115.097,0,-124.813	0/1:56:19,37:19:667:37:1315:-101.793,0,-43.4969	0/0:128:126,2:126:4492:2:72:0,-31.6951,-397.614	0/0:99:99,0:99:3542:0:0:0,-29.802,-318.988
chr07	4973744	.	T	G	86550.5	PASS	AB=0.488384;ABP=12.2928;AC=51;AF=0.271277;AN=188;AO=3887;CIGAR=1X;DP=15087;DPB=15087;DPRA=1.15882;EPP=8443.52;EPPR=24260.5;GTI=1;LEN=1;MEANALT=1.09677;MQM=59.814;MQMR=59.9799;NS=94;NUMALT=1;ODDS=1.89949;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137075;QR=398733;RO=11187;RPL=1863;RPP=17.4911;RPPR=3.13162;RPR=2024;RUN=1;SAF=1863;SAP=17.4911;SAR=2024;SRF=5610;SRP=3.22168;SRR=5577;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:23,46:23:828:46:1617:-125.037,0,-54.073	0/1:241:128,113:128:4557:113:3999:-287.538,0,-337.748	0/1:242:131,111:131:4686:111:3885:-276.94,0,-349.05	0/1:248:121,127:121:4315:127:4494:-329.942,0,-313.872	0/0:157:157,0:157:5540:0:0:0,-47.2617,-498.727	0/0:127:126,0:126:4476:0:0:0,-37.9298,-402.651	0/0:231:231,0:231:8255:0:0:0,-69.5379,-742.946	0/1:193:99,92:99:3535:92:3266:-236.26,0,-260.503	0/0:194:193,1:193:6879:1:36:0,-54.8015,-615.581	0/1:176:82,94:82:2904:94:3316:-245.676,0,-208.614	0/0:170:170,0:170:6100:0:0:0,-51.1751,-549.099	0/1:174:96,78:96:3423:78:2709:-191.617,0,-255.897	0/0:136:136,0:136:4845:0:0:0,-40.9401,-436.201	0/1:157:69,88:69:2461:88:3072:-229.439,0,-174.481	0/1:136:60,76:60:2152:76:2669:-199.511,0,-153.007	0/1:127:70,57:70:2498:57:1993:-141.399,0,-186.841	0/0:148:148,0:148:5278:0:0:0,-44.5524,-475.146	0/1:92:43,49:43:1536:49:1735:-128.72,0,-110.838	0/0:101:101,0:101:3563:0:0:0,-30.404,-320.877	0/1:275:159,116:159:5676:116:4098:-286.219,0,-428.176	0/0:301:301,0:301:10718:0:0:0,-90.61,-964.531	0/1:102:32,70:32:1144:70:2482:-192.928,0,-72.5645	0/1:151:77,74:77:2729:74:2619:-190.494,0,-200.392	0/1:184:107,77:107:3827:77:2734:-190.902,0,-289.237	0/1:124:70,54:70:2483:54:1916:-135.336,0,-186.396	0/0:401:400,1:400:14231:1:36:0,-117.115,-1276.94	0/0:363:362,1:362:12895:1:36:0,-105.676,-1156.77	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/1:400:199,201:199:7096:201:7090:-517.695,0,-518.286	0/0:167:160,7:160:5718:7:248:0,-27.6078,-492.073	0/0:222:221,1:221:7829:1:32:0,-63.6293,-700.746	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:19:8,11:8:280:11:383:-29.0837,0,-19.8197	0/1:380:176,204:176:6297:204:7173:-531.21,0,-452.43	0/1:167:87,79:87:3100:79:2765:-198.728,0,-228.898	0/1:148:74,73:74:2643:73:2583:-188.082,0,-193.505	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:267:117,149:117:4150:149:5296:-396.309,0,-293.252	0/1:103:47,55:47:1688:55:1959:-145.511,0,-121.142	0/1:229:107,122:107:3801:122:4278:-316.256,0,-273.348	0/1:195:121,74:121:4307:74:2624:-177.575,0,-329.105	0/1:86:45,41:45:1590:41:1434:-103.465,0,-117.5	0/0:150:148,2:148:5266:2:72:0,-38.3178,-467.239	0/0:194:193,1:193:6871:1:36:0,-54.8015,-614.864	0/0:205:205,0:205:7332:0:0:0,-61.7111,-659.928	0/1:129:83,46:83:2968:46:1627:-107.882,0,-228.52	0/1:168:99,69:99:3517:69:2452:-170.352,0,-266.167	0/1:253:119,134:119:4241:134:4721:-348.884,0,-305.709	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:192:191,0:191:6820:0:0:0,-57.4967,-613.514	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:206:111,95:111:3947:95:3362:-240.769,0,-293.397	0/1:72:44,28:44:1546:28:983:-67.1079,0,-117.756	0/1:16:11,5:11:392:5:176:-11.3685,0,-30.8036	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9546	0/0:175:175,0:175:6234:0:0:0,-52.6802,-561.158	0/0:228:226,2:226:8077:2:63:0,-62.6517,-720.961	0/1:12:4,8:4:140:8:284:-22.291,0,-9.33222	0/0:188:188,0:188:6719:0:0:0,-56.5936,-603.767	0/0:252:251,1:251:8985:1:36:0,-72.2613,-805.03	0/1:109:65,44:65:2319:44:1555:-107.429,0,-176.149	0/0:126:126,0:126:4515:0:0:0,-37.9298,-406.517	0/1:281:138,143:138:4895:143:5050:-370.054,0,-356.114	0/1:155:60,95:60:2135:95:3355:-255.507,0,-145.758	0/1:79:35,44:35:1244:44:1527:-113.924,0,-88.4824	0/0:140:139,0:139:4937:0:0:0,-41.8432,-444.239	0/1:141:74,67:74:2622:67:2346:-168.935,0,-193.78	0/1:37:26,11:26:924:11:396:-24.8446,0,-72.3395	0/0:139:138,0:138:4885:0:0:0,-41.5421,-439.484	0/1:135:74,61:74:2628:61:2184:-156.178,0,-196.127	0/0:311:311,0:311:11088:0:0:0,-93.6203,-997.787	0/0:223:223,0:223:7926:0:0:0,-67.1297,-713.368	0/1:185:107,78:107:3840:78:2719:-189.239,0,-290.105	0/0:146:145,1:145:5196:1:36:0,-40.3521,-464.172	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:231:231,0:231:8215:0:0:0,-69.5379,-739.361	0/1:231:119,112:119:4236:112:3978:-288.646,0,-311.879	0/0:353:353,0:353:12592:0:0:0,-106.264,-1133.11	0/1:187:104,83:104:3735:83:2926:-207.284,0,-280.056	0/1:109:53,56:53:1875:56:1998:-147.277,0,-136.216	0/0:172:171,0:171:6102:0:0:0,-51.4761,-548.92	0/1:255:141,114:141:5051:114:4010:-284.325,0,-377.967	0/0:61:60,0:60:2145:0:0:0,-18.0618,-192.956	0/0:158:157,0:157:5591:0:0:0,-47.2617,-502.953	0/0:162:162,0:162:5791:0:0:0,-48.7669,-521.305	0/1:86:41,45:41:1472:45:1620:-120.197,0,-106.888	0/1:208:116,92:116:4152:92:3216:-227.048,0,-311.244	0/1:154:54,100:54:1917:100:3482:-267.222,0,-126.447	0/0:201:200,1:200:7151:1:36:0,-56.9088,-640.049	0/0:221:221,0:221:7864:0:0:0,-66.5276,-707.786
chr07	4991413	.	TCTTT	TCTGG,TCTTG	93049	PASS	AB=0.518335,0.4726;ABP=10.0973,18.8369;AC=135,51;AF=0.725806,0.274194;AN=186;AO=3329,1158;CIGAR=3M2X,4M1X;DP=4517;DPB=4517;DPRA=16.3551,1.3131;EPP=7231.84,2517.58;EPPR=5.18177;GTI=2;LEN=2,1;MEANALT=1.90217,2.40351;MQM=59.9886,60;MQMR=60;NS=93;NUMALT=2;ODDS=0.302801;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=116212,41098;QR=27;RO=1;RPL=3329,1158;RPP=7231.84,2517.58;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=3329,1158;SAP=7231.84,2517.58;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,19,16:0:0:19,16:665,563:-100.286,-46.1827,-40.4631,-54.4543,0,-49.6378	1/2:22:0,11,11:0:0:11,11:394,380:-63.3586,-31.2201,-27.9088,-32.4902,0,-29.1788	1/2:87:0,41,46:0:0:41,46:1397,1613:-244.941,-131.61,-119.267,-113.676,0,-99.829	1/2:89:0,50,39:0:0:50,39:1744,1392:-255.674,-113.839,-98.7873,-142.188,0,-130.448	1/1:23:0,23,0:0:0:23,0:806,0:-72.8574,-6.92369,0,-72.8574,-6.92369,-72.8574	1/1:22:0,22,0:0:0:22,0:785,0:-70.9741,-6.62266,0,-70.9741,-6.62266,-70.9741	1/1:53:0,52,0:0:0:52,0:1797,0:-161.667,-15.6536,0,-161.667,-15.6536,-161.667	1/2:54:0,32,22:0:0:32,22:1115,775:-154.119,-63.4485,-53.8156,-91.0205,0,-84.3979	1/1:41:0,40,0:0:0:40,0:1408,0:-126.656,-12.0412,0,-126.656,-12.0412,-126.656	1/2:27:0,10,17:0:0:10,17:358,604:-78.7688,-49.5731,-46.5628,-29.5526,0,-24.4351	1/1:30:0,30,0:0:0:30,0:1018,0:-91.9237,-9.0309,0,-91.9237,-9.0309,-91.9237	1/2:78:0,45,31:0:0:45,31:1531,1112:-214.948,-90.77,-77.2237,-124.239,0,-114.907	1/1:66:0,66,0:0:0:66,0:2310,0:-208.159,-19.868,0,-208.159,-19.868,-208.159	1/2:30:0,12,18:0:0:12,18:418,636:-86.139,-52.1495,-48.5371,-34.3397,0,-28.9212	1/2:42:0,16,26:0:0:16,26:563,924:-121.481,-75.6509,-70.8344,-46.1834,0,-38.3566	1/2:39:0,20,19:0:0:20,19:681,672:-110.324,-55.0873,-49.0667,-55.5842,0,-49.8646	1/1:31:0,31,0:0:0:31,0:1094,0:-98.7705,-9.33193,0,-98.7705,-9.33193,-98.7705	1/2:26:0,13,13:0:0:13,13:456,464:-75.2899,-38.1841,-34.2707,-37.4595,0,-33.5461	1/1:17:0,17,0:0:0:17,0:580,0:-52.5196,-5.11751,0,-52.5196,-5.11751,-52.5196	1/2:76:0,38,37:0:0:38,37:1327,1324:-215.898,-107.964,-96.5251,-107.927,0,-96.7893	1/1:57:0,57,0:0:0:57,0:1969,0:-177.479,-17.1587,0,-177.479,-17.1587,-177.479	1/2:102:0,34,67:0:0:34,67:1176,2404:-291.641,-196.088,-185.853,-95.5443,0,-75.3753	1/2:47:0,23,23:0:0:23,23:818,826:-134.052,-67.3899,-60.4662,-66.6689,0,-59.7452	1/2:45:0,30,15:0:0:30,15:1024,540:-127.499,-44.4211,-35.3902,-83.4318,0,-78.9163	1/2:39:0,21,17:0:0:21,17:756,608:-111.262,-49.5748,-43.2532,-61.6858,0,-56.5683	1/1:134:0,133,1:0:0:133,1:4637,36:-417.136,-40.037,0,-414.198,-36.7397,-413.897	1/1:105:0,103,1:0:0:103,1:3671,36:-330.234,-31.0061,0,-327.297,-28.0687,-326.996	1/1:18:0,18,0:0:0:18,0:619,0:-56.0293,-5.41854,0,-56.0293,-5.41854,-56.0293	1/2:108:0,63,43:0:0:63,43:2201,1532:-304.021,-124.984,-106.019,-179.144,0,-166.199	1/1:52:0,52,0:0:0:52,0:1830,0:-164.979,-15.6536,0,-164.979,-15.6536,-164.979	1/1:64:0,64,0:0:0:64,0:2234,0:-201.319,-19.2659,0,-201.319,-19.2659,-201.319	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:7:0,7,0:0:0:7,0:239,0:-21.8424,-2.10721,0,-21.8424,-2.10721,-21.8424	1/1:4:0,4,0:0:0:4,0:128,0:-11.8352,-1.20412,0,-11.8352,-1.20412,-11.8352	1/1:2:0,2,0:0:0:2,0:67,0:-6.36284,-0.60206,0,-6.36284,-0.60206,-6.36284	1/2:4:0,2,2:0:0:2,2:64,72:-11.3708,-6.23466,-5.6326,-5.47604,0,-4.87398	1/2:146:0,73,72:0:0:73,72:2566,2516:-413.598,-204.734,-182.759,-208.933,0,-187.259	1/2:60:0,32,27:0:0:32,27:1120,964:-169.708,-78.5893,-68.9563,-91.1129,0,-82.9851	1/2:23:0,14,9:0:0:14,9:472,306:-63.4064,-25.1593,-20.9449,-38.5858,0,-35.8766	.:.:.:.:.:.:.:.	1/2:83:0,44,38:0:0:44,38:1542,1352:-235.652,-110.182,-96.9362,-125.464,0,-114.025	1/2:22:1,6,15:1:27:6,15:186,531:-55.8227,-41.2077,-41.5251,-12.8397,0,-10.4474	1/2:95:0,51,43:0:0:51,43:1792,1508:-268.701,-122.843,-107.491,-145.984,0,-133.04	1/2:25:0,15,10:0:0:15,10:505,360:-70.6366,-29.734,-25.2186,-41.2531,0,-38.2428	1/2:39:0,21,18:0:0:21,18:702,632:-108.612,-51.7882,-45.4666,-57.1674,0,-51.7489	1/1:61:0,61,0:0:0:61,0:2154,0:-194.126,-18.3628,0,-194.126,-18.3628,-194.126	1/1:50:0,50,0:0:0:50,0:1760,0:-158.682,-15.0515,0,-158.682,-15.0515,-158.682	1/1:104:0,104,0:0:0:104,0:3678,0:-331.224,-31.3071,0,-331.224,-31.3071,-331.224	1/2:67:0,42,24:0:0:42,24:1492,855:-191.409,-69.8303,-57.187,-121.717,0,-114.492	1/2:55:0,27,27:0:0:27,27:964,959:-156.731,-78.1379,-70.0101,-78.5897,0,-70.4619	1/2:63:0,41,22:0:0:41,22:1397,792:-178.306,-64.983,-52.6408,-113.676,0,-107.053	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:54:0,54,0:0:0:54,0:1912,0:-172.355,-16.2556,0,-172.355,-16.2556,-172.355	1/1:28:0,28,0:0:0:28,0:980,0:-88.5099,-8.42884,0,-88.5099,-8.42884,-88.5099	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.0469,0,-14.4449	1/2:66:0,33,33:0:0:33,33:1160,1176:-190.633,-96.2138,-86.2798,-94.7728,0,-84.8388	1/2:26:0,16,10:0:0:16,10:555,354:-74.2968,-29.1892,-24.3727,-45.4587,0,-42.4484	1/2:15:0,10,2:0:0:10,2:360,72:-35.2517,-5.87616,-2.86586,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chr07	4991635	.	A	G	29817.6	PASS	AB=0.491619;ABP=5.2307;AC=51;AF=0.271277;AN=188;AO=1810;CIGAR=1X;DP=7140;DPB=7140;DPRA=1.33748;EPP=3933.38;EPPR=11577;GTI=2;LEN=1;MEANALT=1;MQM=59.6735;MQMR=59.9537;NS=94;NUMALT=1;ODDS=0.770958;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64700;QR=191079;RO=5330;RPL=1810;RPP=3933.38;RPPR=11577;RPR=0;RUN=1;SAF=1810;SAP=3933.38;SAR=0;SRF=5330;SRP=11577;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:93:51,42:51:1819:42:1499:-107.125,0,-135.995	0/1:55:25,30:25:900:30:1072:-80.2354,0,-64.7644	0/1:175:90,85:90:3224:85:3044:-221.46,0,-237.701	0/1:169:84,85:84:3012:85:3038:-222.68,0,-220.437	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.214	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.49	0/1:130:83,47:83:2946:47:1669:-111.357,0,-226.238	0/0:149:149,0:149:5340:0:0:0,-44.8535,-480.722	0/1:72:29,43:29:1040:43:1536:-116.852,0,-72.1952	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:76:33,43:33:1188:43:1528:-114.927,0,-84.3488	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:37:19,18:19:684:18:640:-46.7866,0,-50.7513	0/1:55:24,31:24:841:31:1112:-83.8347,0,-59.4497	0/1:41:21,20:21:756:20:711:-51.9505,0,-56.025	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:101:52,49:52:1868:49:1764:-128.62,0,-137.995	0/0:146:146,0:146:5252:0:0:0,-43.9504,-472.785	0/1:103:28,75:28:1008:75:2678:-210.199,0,-60.0303	0/1:82:42,40:42:1497:40:1440:-105.213,0,-109.481	0/1:102:63,39:63:2260:39:1396:-95.2294,0,-172.958	0/1:134:71,63:71:2536:63:2264:-163.659,0,-188.153	0/0:214:214,0:214:7662:0:0:0,-64.4204,-689.482	0/0:241:240,1:240:8617:1:36:0,-68.95,-771.921	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:245:126,119:126:4520:119:4261:-309.883,0,-333.214	0/0:113:109,4:109:3916:4:144:0,-20.7028,-339.318	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:176:90,86:90:3212:86:3083:-224.714,0,-236.322	0/1:91:55,36:55:1976:36:1292:-88.8193,0,-150.721	0/1:27:18,9:18:644:9:315:-20.5308,0,-50.1628	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:102:55,47:55:1980:47:1680:-120.782,0,-147.713	0/1:20:6,14:6:212:14:504:-39.6775,0,-13.4042	0/1:137:66,71:66:2376:71:2544:-187.959,0,-172.856	0/1:35:13,22:13:464:22:788:-60.704,0,-31.5615	0/1:43:16,27:16:568:27:959:-73.6729,0,-38.5076	0/0:159:159,0:159:5688:0:0:0,-47.8638,-512.039	0/0:96:96,0:96:3417:0:0:0,-28.8989,-307.744	0/0:155:155,0:155:5551:0:0:0,-46.6596,-499.712	0/1:86:50,36:50:1792:36:1282:-89.2965,0,-135.674	0/1:72:50,22:50:1796:22:792:-49.9268,0,-140.248	0/1:125:60,65:60:2156:65:2323:-171.696,0,-156.678	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:60:59,1:59:2112:1:36:0,-14.4635,-186.751	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:9:5,4:5:180:4:135:-9.76487,0,-13.8428	0/1:91:53,38:53:1900:38:1360:-95.3023,0,-143.884	0/1:59:35,24:35:1252:24:860:-59.9587,0,-95.2243	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9422	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:62:62,0:62:2224:0:0:0,-18.6639,-199.797	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:142:142,0:142:5092:0:0:0,-42.7463,-458.402	0/0:147:144,3:144:5176:3:108:0,-34.1762,-455.902	0/1:59:34,25:34:1220:25:900:-63.5602,0,-92.346	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:80:30,50:30:1080:50:1776:-136.033,0,-73.4309	0/1:69:24,45:24:864:45:1607:-124.148,0,-57.3111	0/1:13:8,5:8:288:5:180:-12.634,0,-22.354	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.341	0/1:42:17,25:17:612:25:898:-68.497,0,-42.7702	0/1:13:11,2:11:396:2:72:-2.91849,0,-32.0694	0/0:164:163,1:163:5840:1:32:0,-46.1696,-522.501	0/1:113:70,43:70:2516:43:1520:-103.013,0,-192.675	0/0:92:92,0:92:3281:0:0:0,-27.6948,-295.507	0/0:136:136,0:136:4877:0:0:0,-40.9401,-439.08	0/1:87:43,44:43:1548:44:1576:-115.744,0,-113.423	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:103:100,3:100:3600:3:108:0,-20.9309,-314.129	0/1:75:41,34:41:1476:34:1212:-86.8091,0,-110.559	0/0:254:253,1:253:9092:1:36:0,-72.8633,-814.652	0/1:26:10,16:10:360:16:568:-43.6251,0,-24.9175	0/1:45:18,27:18:648:27:968:-73.891,0,-45.1055	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:104:55,49:55:1968:49:1748:-126.297,0,-146.077	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:73:37,36:37:1328:36:1274:-92.9476,0,-97.847	0/1:53:16,37:16:568:37:1328:-103.868,0,-35.4973	0/0:121:121,0:121:4317:0:0:0,-36.4246,-388.678	0/0:81:79,2:79:2840:2:72:0,-17.5467,-249.001
chr07	4991718	.	GAG	AAT,AAG	220454	PASS	AB=0.503005,0.495492;ABP=3.42795,3.95002;AC=138,50;AF=0.734043,0.265957;AN=188;AO=7747,2658;CIGAR=1X1M1X,1X2M;DP=10419;DPB=10419;DPRA=0,1.23413;EPP=16825.4,5774.78;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.71277,2.14815;MQM=59.6325,59.9831;MQMR=60;NS=94;NUMALT=2;ODDS=1.59862;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=273233,95233;QR=36;RO=1;RPL=7747,2658;RPP=16825.4,5774.78;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=16825.4,5774.78;SAR=7747,2658;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:21:0,14,7:0:0:14,7:480,252:-59.8682,-20.9217,-16.7073,-39.3006,0,-37.1934	1/2:402:0,193,208:0:0:193,208:6852,7428:-1163.81,-605.628,-547.53,-558.286,0,-495.671	1/2:155:0,86,69:0:0:86,69:3070,2476:-452.572,-202.322,-176.434,-250.608,0,-229.836	1/2:165:0,78,87:0:0:78,87:2767,3112:-479.542,-254.118,-230.637,-225.781,0,-199.591	1/1:66:0,62,4:0:0:62,4:2195,144:-197.438,-18.6639,0,-185.688,-6.55436,-184.484	1/1:70:0,70,0:0:0:70,0:2480,0:-223.409,-21.0721,0,-223.409,-21.0721,-223.409	1/1:120:0,120,0:0:0:120,0:4226,0:-380.512,-36.1236,0,-380.512,-36.1236,-380.512	1/2:238:0,113,125:0:0:113,125:3959,4480:-687.612,-365.739,-331.723,-322.227,0,-284.598	1/1:49:0,49,0:0:0:49,0:1728,0:-155.724,-14.7505,0,-155.724,-14.7505,-155.724	1/2:112:0,66,46:0:0:66,46:2332,1644:-324.311,-134.399,-114.531,-190.267,0,-176.42	1/1:80:0,80,0:0:0:80,0:2819,0:-253.861,-24.0824,0,-253.861,-24.0824,-253.861	1/2:56:0,27,29:0:0:27,29:956,1044:-163.398,-85.5449,-77.4171,-78.2102,0,-69.4803	1/1:32:0,32,0:0:0:32,0:1143,0:-103.162,-9.63296,0,-103.162,-9.63296,-103.162	1/2:131:0,49,81:0:0:49,81:1740,2916:-378.616,-238.041,-223.29,-140.68,0,-116.296	1/2:40:0,15,25:0:0:15,25:536,900:-117.494,-73.7953,-69.2798,-44.0572,0,-36.5315	1/2:39:0,10,29:0:0:10,29:345,1044:-113.567,-85.5449,-82.5346,-28.3705,0,-19.6407	1/1:111:0,111,0:0:0:111,0:3910,0:-351.131,-33.4143,0,-351.131,-33.4143,-351.131	1/2:49:0,12,37:0:0:12,37:412,1327:-142.042,-108.594,-104.982,-33.795,0,-22.6569	1/1:26:0,26,0:0:0:26,0:919,0:-83.0236,-7.82678,0,-83.0236,-7.82678,-83.0236	1/2:192:0,105,87:0:0:105,87:3730,3117:-558.487,-254.565,-222.957,-304.279,0,-278.09	1/1:134:0,133,0:0:0:133,0:4660,0:-419.193,-40.037,0,-419.193,-40.037,-419.193	1/2:128:0,66,62:0:0:66,62:2336,2228:-372.394,-182.12,-162.252,-190.63,0,-171.966	1/2:20:0,11,9:0:0:11,9:390,324:-58.5669,-26.7966,-23.4853,-32.1277,0,-29.4184	1/2:109:0,61,48:0:0:61,48:2153,1720:-315.931,-140.636,-122.273,-175.651,0,-161.201	1/2:51:0,28,23:0:0:28,23:971,824:-146.47,-67.5596,-59.1308,-79.2632,0,-72.3395	1/1:391:0,391,0:0:0:391,0:13816,0:-1243.12,-117.703,0,-1243.12,-117.703,-1243.12	1/1:182:0,180,0:0:0:180,0:6354,0:-571.611,-54.1854,0,-571.611,-54.1854,-571.611	1/1:24:0,24,0:0:0:24,0:846,0:-76.4508,-7.22472,0,-76.4508,-7.22472,-76.4508	1/2:253:0,131,122:0:0:131,122:4603,4353:-729.792,-355.218,-315.783,-374.928,0,-338.203	1/1:691:0,680,11:0:0:680,11:24053,396:-2163.61,-204.7,0,-2131.29,-172.029,-2127.98	1/1:124:0,124,0:0:0:124,0:4363,0:-392.839,-37.3277,0,-392.839,-37.3277,-392.839	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:10:0,10,0:0:0:10,0:358,0:-32.5577,-3.0103,0,-32.5577,-3.0103,-32.5577	1/1:5:0,5,0:0:0:5,0:167,0:-14.0557,-1.50515,0,-14.0557,-1.50515,-14.0557	1/1:7:0,7,0:0:0:7,0:246,0:-22.4591,-2.10721,0,-22.4591,-2.10721,-22.4591	1/2:12:0,5,7:0:0:5,7:180,252:-35.6088,-20.9217,-19.4166,-15.0469,0,-12.9397	1/2:112:0,47,64:0:0:47,64:1658,2294:-322.073,-187.094,-172.946,-134.974,0,-115.708	1/2:299:0,160,137:0:0:160,137:5631,4912:-859.001,-400.669,-352.504,-458.366,0,-417.125	1/2:67:0,31,36:0:0:31,36:1109,1292:-196.13,-105.747,-96.4148,-90.7413,0,-79.9042	1/2:5:0,1,4:0:0:1,4:28,140:-13.9452,-11.7405,-11.4394,-2.4987,0,-1.29458	1/2:172:0,82,90:0:0:82,90:2891,3236:-499.719,-264.368,-239.683,-235.707,0,-208.614	1/2:35:0,17,18:0:0:17,18:600,644:-101.728,-52.8721,-47.7545,-49.2113,0,-43.7928	1/2:154:0,90,64:0:0:90,64:3185,2285:-445.814,-186.644,-159.551,-259.526,0,-240.26	1/2:59:0,21,37:0:0:21,37:739,1315:-167.41,-107.26,-100.939,-60.2472,0,-49.1091	1/2:34:0,16,18:0:0:16,18:573,648:-99.9619,-53.2333,-48.4169,-47.0874,0,-41.6689	1/1:80:0,80,0:0:0:80,0:2847,0:-256.469,-24.0824,0,-256.469,-24.0824,-256.469	1/1:153:0,153,0:0:0:153,0:5384,0:-484.693,-46.0576,0,-484.693,-46.0576,-484.693	1/1:214:0,214,0:0:0:214,0:7545,0:-679.069,-64.4204,0,-679.069,-64.4204,-679.069	1/2:102:0,63,39:0:0:63,39:2223,1381:-293.86,-112.847,-93.8817,-181.367,0,-169.627	1/2:215:0,103,112:0:0:103,112:3632,4016:-623.638,-327.913,-296.907,-296.081,0,-262.365	1/2:153:0,77,76:0:0:77,76:2701,2732:-443.042,-223.244,-200.065,-220.153,0,-197.274	1/1:18:0,17,0:0:0:17,0:607,0:-54.6024,-5.11751,0,-54.6024,-5.11751,-54.6024	1/1:147:0,147,0:0:0:147,0:5173,0:-465.662,-44.2514,0,-465.662,-44.2514,-465.662	1/1:108:0,108,0:0:0:108,0:3815,0:-343.48,-32.5112,0,-343.48,-32.5112,-343.48	1/2:12:0,3,9:0:0:3,9:108,324:-35.6088,-26.7966,-25.8935,-9.17208,0,-6.46281	1/2:134:0,77,57:0:0:77,57:2700,2019:-384.501,-164.822,-141.643,-220.03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chr07	5018740	.	G	A	45891.4	PASS	AB=0.529538;ABP=42.0073;AC=53;AF=0.281915;AN=188;AO=2750;CIGAR=1X;DP=9682;DPB=9682;DPRA=1.29441;EPP=5974.56;EPPR=15036.1;GTI=1;LEN=1;MEANALT=1;MQM=59.8156;MQMR=59.9521;NS=94;NUMALT=1;ODDS=3.15568;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97052;QR=246828;RO=6927;RPL=2750;RPP=5974.56;RPPR=15036.1;RPR=0;RUN=1;SAF=2750;SAP=5974.56;SAR=0;SRF=6927;SRP=15044.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:14,21:14:500:21:736:-56.0257,0,-34.8001	0/1:145:82,63:82:2924:63:2240:-158.207,0,-219.659	0/1:84:45,39:45:1616:39:1388:-99.9309,0,-120.443	0/1:232:111,121:111:3954:121:4278:-315.363,0,-286.201	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.851	0/1:133:64,69:64:2284:69:2445:-180.267,0,-165.785	0/1:173:92,81:92:3281:81:2865:-205.633,0,-243.343	0/0:111:111,0:111:3959:0:0:0,-33.4143,-356.502	0/1:104:49,55:49:1760:55:1948:-144.284,0,-127.374	0/0:49:49,0:49:1739:0:0:0,-14.7505,-156.794	0/1:50:31,19:31:1092:19:659:-44.5792,0,-83.5381	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.133	0/1:101:44,57:44:1568:57:2003:-150.132,0,-111.005	0/1:67:39,28:39:1392:28:996:-69.7859,0,-105.41	0/1:55:33,22:33:1172:22:780:-53.9654,0,-89.2308	0/0:83:83,0:83:2936:0:0:0,-24.9855,-264.474	0/1:72:33,39:33:1175:39:1388:-103.541,0,-84.3828	0/0:31:31,0:31:1091:0:0:0,-9.33193,-98.4981	0/1:192:78,114:78:2787:114:4002:-302.574,0,-193.272	0/0:203:203,0:203:7225:0:0:0,-61.1091,-650.303	0/1:111:24,87:24:856:87:3043:-240.688,0,-43.9468	0/1:36:22,14:22:792:14:500:-34.4991,0,-60.7686	0/1:89:47,42:47:1668:42:1477:-106.431,0,-123.616	0/1:92:29,63:29:1036:63:2228:-173.081,0,-65.8592	0/0:319:317,0:317:11290:0:0:0,-95.4265,-1015.62	0/0:240:239,1:239:8530:1:36:0,-68.6489,-764.101	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:250:103,147:103:3677:147:5165:-389.739,0,-255.875	0/0:227:218,9:218:7785:9:320:0,-39.1938,-671.538	0/0:97:97,0:97:3423:0:0:0,-29.1999,-308.282	0/1:10:3,7:3:108:7:240:-18.921,0,-7.06487	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:226:121,105:121:4293:105:3760:-270.553,0,-318.467	0/1:197:86,111:86:3088:111:3914:-292.765,0,-218.844	0/1:55:26,29:26:923:29:1040:-77.3577,0,-66.8301	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:190:86,104:86:3061:104:3642:-270.79,0,-218.523	0/1:36:18,18:18:644:18:640:-47.0875,0,-47.4535	0/1:142:65,77:65:2328:77:2717:-202.013,0,-167.034	0/1:53:35,18:35:1232:18:640:-41.9747,0,-95.0384	0/1:63:25,38:25:884:38:1340:-101.935,0,-60.9135	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/0:128:128,0:128:4552:0:0:0,-38.5318,-409.849	0/0:274:273,1:273:9733:1:32:0,-79.2829,-872.452	0/1:131:70,61:70:2497:61:2140:-153.432,0,-184.688	0/1:259:107,152:107:3803:152:5328:-401.686,0,-264.5	0/1:119:53,66:53:1896:66:2334:-174.482,0,-135.091	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/0:118:118,0:118:4227:0:0:0,-35.5215,-380.609	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:18:9,9:9:324:9:320:-23.7207,0,-24.0873	0/1:181:97,84:97:3446:84:2930:-209.432,0,-255.865	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	1/1:3:0,3:0:0:3:104:-9.70239,-0.90309,0	0/0:44:44,0:44:1552:0:0:0,-13.2453,-139.969	0/0:125:125,0:125:4445:0:0:0,-37.6287,-400.136	0/0:126:126,0:126:4440:0:0:0,-37.9298,-399.774	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/0:169:167,0:167:5964:0:0:0,-50.272,-536.501	0/0:326:319,7:319:11436:7:244:0,-75.8387,-1006.81	0/1:107:51,56:51:1801:56:1957:-144.192,0,-130.16	0/0:71:70,1:70:2512:1:36:0,-17.7749,-222.734	0/1:124:57,67:57:1969:67:2343:-173.8,0,-140.148	0/1:107:42,65:42:1508:65:2324:-177.21,0,-103.804	0/1:24:8,16:8:288:16:560:-43.5017,0,-19.0427	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:98:44,54:44:1571:54:1936:-145.015,0,-112.18	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/0:98:98,0:98:3479:0:0:0,-29.5009,-313.323	0/1:83:41,42:41:1468:42:1468:-107.416,0,-107.431	0/0:153:152,1:152:5402:1:36:0,-42.4593,-482.713	0/0:145:144,1:144:5152:1:21:0,-41.5536,-461.726	0/1:187:66,121:66:2352:121:4312:-331.923,0,-155.647	0/0:149:148,1:148:5300:1:36:0,-41.2552,-473.534	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:133:133,0:133:4721:0:0:0,-40.037,-425.039	0/1:133:67,66:67:2404:66:2329:-169.825,0,-176.579	0/0:192:192,0:192:6797:0:0:0,-57.7978,-611.733	0/1:111:54,57:54:1936:57:2027:-149.288,0,-141.102	0/1:70:35,35:35:1239:35:1240:-90.8324,0,-90.7416	0/0:95:95,0:95:3341:0:0:0,-28.5978,-300.908	0/1:127:66,61:66:2351:61:2139:-154.51,0,-173.618	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:84:84,0:84:2980:0:0:0,-25.2865,-268.434	0/1:57:35,22:35:1256:22:763:-51.8298,0,-96.1866	0/1:98:57,41:57:2040:41:1443:-100.654,0,-154.371	0/1:50:19,31:19:680:31:1108:-84.9795,0,-46.4777	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:91:90,0:90:3224:0:0:0,-27.0927,-290.101
chr07	5018789	.	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chr07	5427841	.	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chr07	5449007	.	C	A	36275.9	PASS	AB=0.40847;ABP=423.972;AC=49;AF=0.263441;AN=186;AO=2389;CIGAR=1X;DP=10834;DPB=10834;DPRA=1.44688;EPP=5190.66;EPPR=18319.4;GTI=3;LEN=1;MEANALT=1.13333;MQM=59.954;MQMR=59.975;NS=93;NUMALT=1;ODDS=3.9866;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85036;QR=302277;RO=8435;RPL=0;RPP=5190.66;RPPR=18319.4;RPR=2389;RUN=1;SAF=2389;SAP=5190.66;SAR=0;SRF=8435;SRP=18319.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:40,31:40:1436:31:1116:-79.3786,0,-108.165	0/1:82:55,27:55:1980:27:972:-63.1134,0,-153.79	0/1:172:92,80:92:3308:80:2880:-207.658,0,-246.16	0/1:248:157,91:157:5636:91:3212:-214.273,0,-432.703	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:206:206,0:206:7388:0:0:0,-62.0122,-664.965	0/1:186:106,80:106:3804:80:2812:-197.323,0,-286.565	0/0:156:155,1:155:5544:1:25:0,-44.4608,-496.585	0/1:102:65,37:65:2332:37:1332:-89.4773,0,-179.434	0/0:57:57,0:57:2043:0:0:0,-17.1587,-184.141	0/0:133:133,0:133:4763:0:0:0,-40.037,-428.827	0/0:121:121,0:121:4348:0:0:0,-36.4246,-391.493	0/1:81:51,30:51:1828:30:1080:-73.1298,0,-140.418	0/1:85:45,39:45:1616:39:1400:-100.653,0,-120.084	0/1:73:43,30:43:1548:30:1075:-75.0877,0,-117.638	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:37:17,20:17:599:20:720:-53.9907,0,-43.1	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:193:132,59:132:4748:59:2107:-132.041,0,-369.619	0/0:214:214,0:214:7652:0:0:0,-64.4204,-688.648	0/1:199:75,122:75:2683:122:4339:-331.02,0,-182.052	0/1:145:81,64:81:2904:64:2289:-162.62,0,-217.946	0/1:93:55,38:55:1972:38:1368:-95.425,0,-149.759	0/1:114:59,55:59:2108:55:1972:-143.437,0,-155.672	0/0:401:399,2:399:14274:2:59:0,-115.11,-1278.62	0/0:228:228,0:228:8129:0:0:0,-68.6348,-731.617	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:252:140,112:140:5012:112:3990:-283.428,0,-375.262	0/0:225:218,7:218:7816:7:252:0,-44.7028,-680.438	0/0:186:185,1:185:6597:1:36:0,-52.3933,-590.214	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:267:169,98:169:6042:98:3513:-235.947,0,-463.508	0/1:146:85,61:85:3040:61:2173:-151.884,0,-229.88	0/1:39:21,18:21:756:18:603:-42.8413,0,-56.6271	.:.:.:.:.:.:.:.	0/1:134:86,48:86:3088:48:1709:-113.756,0,-237.809	0/1:39:29,10:29:1040:10:360:-21.0041,0,-82.1742	0/1:230:128,102:128:4584:102:3612:-256.047,0,-343.488	0/1:69:46,23:46:1652:23:828:-54.073,0,-128.197	0/1:71:37,34:37:1328:34:1216:-88.3734,0,-98.4491	0/0:182:182,0:182:6540:0:0:0,-54.7875,-588.679	0/0:194:194,0:194:6956:0:0:0,-58.3998,-626.086	0/1:266:164,102:164:5845:102:3638:-247.321,0,-446.071	0/0:147:147,0:147:5260:0:0:0,-44.2514,-473.531	0/1:122:90,32:90:3217:32:1148:-66.9042,0,-253.025	0/1:233:132,101:132:4740:101:3579:-252.174,0,-356.617	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:119:68,50:68:2436:50:1796:-126.041,0,-183.614	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5054	0/1:139:75,63:75:2700:63:2264:-162.11,0,-201.341	0/1:90:74,16:74:2648:16:553:-23.0013,0,-211.46	0/1:13:10,3:10:352:3:108:-6.16178,0,-28.1048	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.948	0/0:114:114,0:114:4104:0:0:0,-34.3174,-369.543	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:280:278,1:278:9968:1:23:0,-81.9824,-894.334	0/0:230:222,8:222:7933:8:288:0,-42.9695,-687.727	0/1:68:42,26:42:1508:26:883:-59.3054,0,-115.545	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016	0/1:210:136,74:136:4876:74:2604:-171.387,0,-375.618	0/1:157:69,87:69:2476:87:3075:-229.655,0,-175.773	0/1:32:21,11:21:748:11:392:-25.9871,0,-58.0123	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:42:26,16:26:936:16:561:-38.1739,0,-71.9162	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/0:167:167,0:167:5980:0:0:0,-50.272,-538.298	0/1:100:63,37:63:2256:37:1324:-89.3591,0,-173.2	0/0:150:149,1:149:5340:1:23:0,-42.8546,-478.433	0/0:222:222,0:222:7945:0:0:0,-66.8287,-715.072	0/1:142:72,70:72:2584:70:2493:-181.846,0,-190.063	0/0:136:134,2:134:4812:2:72:0,-34.1034,-426.397	0/0:26:25,1:25:888:1:36:0,-4.2285,-76.6408	0/0:143:142,1:142:5100:1:36:0,-39.449,-455.525	0/1:127:85,42:85:3036:42:1497:-96.7917,0,-235.24	0/1:242:142,100:142:5096:100:3554:-247.217,0,-385.933	0/1:71:37,34:37:1314:34:1224:-89.0939,0,-97.1871	0/1:85:55,30:55:1976:30:1072:-71.2049,0,-152.527	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:173:107,65:107:3839:65:2336:-158.441,0,-293.647	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:97:97,0:97:3475:0:0:0,-29.1999,-312.961	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/1:35:19,16:19:684:16:561:-40.2811,0,-51.3543	0/1:80:52,28:52:1868:28:1008:-66.954,0,-144.317	0/1:77:35,42:35:1256:42:1489:-111.123,0,-90.166	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:132:131,1:131:4699:1:25:0,-37.2368,-420.569
chr07	5449150	.	T	A	38464.5	PASS	AB=0.526443;ABP=30.6867;AC=54;AF=0.287234;AN=188;AO=2412;CIGAR=1X;DP=8152;DPB=8152;DPRA=1.0334;EPP=5240.6;EPPR=12456.4;GTI=1;LEN=1;MEANALT=1.05172;MQM=44.1161;MQMR=56.9604;NS=94;NUMALT=1;ODDS=3.80595;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85726;QR=204806;RO=5735;RPL=0;RPP=5240.6;RPPR=12456.4;RPR=2412;RUN=1;SAF=2412;SAP=5240.6;SAR=0;SRF=5735;SRP=12456.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:27,39:27:964:39:1400:-95.1797,0,-66.6421	0/1:79:40,38:40:1432:38:1334:-86.8365,0,-104.449	0/1:116:48,68:48:1697:68:2398:-159.809,0,-117.343	0/1:161:85,76:85:3040:76:2721:-192.632,0,-224.529	0/0:68:68,0:68:2420:0:0:0,-20.47,-217.293	0/0:109:109,0:109:3897:0:0:0,-32.8123,-348.696	0/0:102:102,0:102:3633:0:0:0,-30.7051,-327.044	0/1:115:70,45:70:2496:45:1620:-99.4019,0,-189.082	0/0:109:109,0:109:3839:0:0:0,-32.8123,-342.331	0/1:69:30,39:30:1061:39:1396:-102.033,0,-75.0283	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.711	0/0:57:57,0:57:2044:0:0:0,-17.1587,-183.438	0/0:61:61,0:61:2184:0:0:0,-18.3628,-195.84	0/1:37:14,23:14:489:23:824:-61.4341,0,-33.1835	0/1:58:26,32:26:936:32:1152:-85.1727,0,-67.0343	0/1:56:28,28:28:1004:28:1008:-71.6299,0,-73.0892	0/0:69:69,0:69:2468:0:0:0,-20.7711,-220.8	0/1:43:21,22:21:752:22:792:-51.1952,0,-54.8662	0/1:26:7,19:7:248:19:680:-47.4361,0,-14.6597	0/1:191:89,102:89:3169:102:3611:-264.187,0,-227.143	0/0:120:120,0:120:4304:0:0:0,-36.1236,-385.846	0/1:131:22,109:22:788:109:3863:-305.268,0,-31.5215	0/1:87:42,45:42:1496:45:1530:-110.276,0,-107.933	0/1:132:74,58:74:2648:58:2065:-141.715,0,-198.701	0/1:25:17,8:17:612:8:288:-18.2316,0,-47.8877	0/0:321:321,0:321:11516:0:0:0,-96.6306,-1035.69	0/0:233:233,0:233:8318:0:0:0,-70.14,-748.127	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:267:144,123:144:5157:123:4409:-312.033,0,-383.452	0/0:123:118,5:118:4179:5:172:0,-21.6134,-360.22	0/0:140:140,0:140:5024:0:0:0,-42.1442,-451.72	0/1:16:5,11:5:176:11:381:-29.1235,0,-11.3685	0/0:28:27,1:27:964:1:36:0,-4.88032,-83.4346	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4978	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.8693	0/1:18:7,11:7:252:11:381:-26.472,0,-17.5349	0/1:153:75,78:75:2696:78:2774:-202.264,0,-196.694	0/1:168:80,88:80:2823:88:3156:-228.464,0,-202.861	0/1:44:17,26:17:600:26:936:-64.8479,0,-40.7386	1/1:4:0,4:0:0:4:144:-12.8987,-1.20412,0	0/1:97:49,48:49:1741:48:1694:-119.079,0,-127.042	0/1:36:18,18:18:644:18:640:-45.8868,0,-47.425	0/1:157:86,71:86:3069:71:2525:-175.826,0,-228.947	0/1:50:24,26:24:860:26:917:-67.0815,0,-62.6703	0/1:52:22,30:22:773:30:1061:-78.0876,0,-54.2075	0/0:157:157,0:157:5640:0:0:0,-47.2617,-507.634	0/0:98:98,0:98:3516:0:0:0,-29.5009,-314.642	0/1:117:62,55:62:2204:55:1944:-137.682,0,-163.332	0/0:64:64,0:64:2288:0:0:0,-19.2659,-205.859	0/1:161:92,69:92:3273:69:2480:-172.622,0,-245.441	0/1:167:80,87:80:2857:87:3094:-224.945,0,-207.024	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1377	0/1:106:57,49:57:2044:49:1756:-110.428,0,-151.715	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.371	0/1:25:14,11:14:481:11:392:-25.2422,0,-35.9627	0/1:108:43,65:43:1540:65:2321:-172.844,0,-106.239	0/1:26:13,13:13:468:13:468:-34.2616,0,-34.6043	0/1:14:4,10:4:140:10:356:-27.989,0,-8.73016	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7519	0/0:72:71,1:71:2536:1:36:0,-18.138,-224.881	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.266	0/1:5:1,4:1:36:4:144:-11.6921,0,-2.09312	0/0:165:165,0:165:5905:0:0:0,-49.6699,-531.469	0/0:234:232,1:232:8293:1:36:0,-66.9299,-742.293	0/1:67:33,34:33:1184:34:1201:-84.9807,0,-86.4184	0/0:88:86,0:86:3042:0:0:0,-25.8886,-273.503	0/1:162:66,96:66:2341:96:3388:-253.204,0,-161.995	0/1:100:21,79:21:737:79:2765:-216.386,0,-36.5476	0/1:13:5,8:5:180:8:273:-20.2236,0,-12.6304	0/0:62:62,0:62:2224:0:0:0,-18.6639,-199.194	0/1:80:45,35:45:1593:35:1256:-87.5575,0,-119.535	0/1:19:9,10:9:324:10:360:-26.1497,0,-23.7576	0/0:93:93,0:93:3309:0:0:0,-27.9958,-295.673	0/1:34:10,24:10:360:24:849:-60.3002,0,-22.402	0/0:85:85,0:85:3029:0:0:0,-25.5875,-272.622	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.712	0/1:163:89,74:89:3150:74:2592:-162.767,0,-233.246	0/0:89:89,0:89:3192:0:0:0,-26.7917,-286.224	0/0:38:38,0:38:1333:0:0:0,-11.4391,-119.243	0/0:75:74,1:74:2644:1:36:0,-19.0287,-234.358	0/1:119:54,65:54:1940:65:2313:-154.957,0,-138.44	0/1:243:110,133:110:3944:133:4739:-347.115,0,-281.591	0/1:87:41,46:41:1464:46:1633:-119.166,0,-105.537	0/1:43:18,25:18:636:25:900:-67.3513,0,-44.5906	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.744	0/1:92:50,42:50:1788:42:1489:-104.37,0,-133.258	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.1937	0/0:56:56,0:56:2012:0:0:0,-16.8577,-180.641	0/0:65:65,0:65:2332:0:0:0,-19.5669,-209.072	0/1:31:11,20:11:392:20:720:-54.9053,0,-26.2429	0/1:73:46,27:46:1652:27:953:-62.6788,0,-126.991	0/1:52:15,37:15:540:37:1324:-102.679,0,-33.2653	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.365	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.09
chr07	5457961	.	T	A	89737.7	PASS	AB=0.431283;ABP=137.008;AC=135;AF=0.725806;AN=186;AO=4258;CIGAR=1X;DP=6122;DPB=6122;DPRA=0;EPP=8964.73;EPPR=3953.39;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9688;MQMR=59.9935;NS=93;NUMALT=1;ODDS=0.442741;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152214;QR=66747;RO=1859;RPL=32;RPP=8973.28;RPPR=3953.39;RPR=4226;RUN=1;SAF=1;SAP=9240.46;SAR=4257;SRF=0;SRP=4039.78;SRR=1859;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:43:26,17:26:932:17:612:-42.4691,0,-71.2546	0/1:101:60,39:60:2160:39:1387:-94.9615,0,-164.505	0/1:228:140,87:140:5036:87:3119:-212.243,0,-384.677	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:85:0,85:0:0:85:3043:-274.099,-25.5876,0	0/1:78:45,33:45:1620:33:1188:-83.7483,0,-122.61	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	0/1:105:61,44:61:2184:44:1580:-110.883,0,-165.218	1/1:23:0,23:0:0:23:819:-74.0316,-6.92369,0	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:51:0,51:0:0:51:1823:-164.35,-15.3525,0	0/1:40:21,19:21:756:19:684:-49.8491,0,-56.326	0/1:30:19,11:19:684:11:387:-26.135,0,-52.8594	0/1:37:20,17:20:720:17:608:-43.9139,0,-53.9907	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:25:15,10:15:540:10:356:-24.8555,0,-41.4108	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:87:46,41:46:1652:41:1472:-106.587,0,-122.779	1/1:169:0,169:0:0:169:6002:-540.285,-50.8741,0	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/1:78:40,38:40:1436:38:1368:-99.9405,0,-106.057	0/1:74:35,39:35:1256:39:1392:-103.303,0,-91.0691	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	1/1:150:0,150:0:0:150:5364:-482.89,-45.1545,0	1/1:142:0,142:0:0:142:5026:-452.485,-42.7463,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:227:133,94:133:4780:94:3372:-235.361,0,-362.021	1/1:104:3,101:3:108:101:3619:-315.733,-21.232,0	1/1:93:0,93:0:0:93:3303:-297.488,-27.9958,0	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:109:62,47:62:2228:47:1692:-119.755,0,-167.972	0/1:60:24,36:24:860:36:1287:-98.071,0,-59.66	0/1:16:8,8:8:288:8:277:-20.4486,0,-21.4509	.:.:.:.:.:.:.:.	0/1:93:54,39:54:1936:39:1400:-98.3034,0,-146.521	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:65:42,23:42:1504:23:824:-54.9164,0,-116.088	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/1:32:21,11:21:756:11:396:-26.3498,0,-58.7343	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:116:69,47:69:2480:47:1688:-117.287,0,-188.534	1/1:66:0,66:0:0:66:2358:-212.478,-19.868,0	0/1:131:72,59:72:2573:59:2116:-151.274,0,-192.383	0/1:118:56,62:56:2012:62:2210:-163.641,0,-145.832	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:38:17,21:17:612:21:752:-56.5671,0,-43.9743	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:123:66,57:66:2368:57:2025:-145.494,0,-176.351	0/1:24:15,9:15:521:9:309:-20.916,0,-39.9916	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:325:0,325:0:0:325:11642:-1047.64,-97.8348,0	1/1:109:0,109:0:0:109:3892:-350.475,-32.8123,0	0/1:54:29,25:29:1032:25:892:-64.3441,0,-76.9379	1/1:33:0,33:0:0:33:1153:-104.074,-9.93399,0	0/1:134:88,46:88:3164:46:1656:-108.99,0,-244.645	0/1:138:96,42:96:3433:42:1500:-93.7524,0,-267.64	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	0/1:41:21,20:21:756:20:720:-52.7865,0,-56.025	0/1:26:11,15:11:396:15:536:-40.748,0,-28.156	1/1:106:0,106:0:0:106:3777:-340.121,-31.9092,0	0/1:60:48,12:48:1720:12:429:-20.8877,0,-137.024	1/1:100:0,100:0:0:100:3571:-321.594,-30.103,0	1/1:235:0,234:0:0:234:8377:-753.302,-70.441,0	0/1:29:25,4:25:896:4:140:-4.21471,0,-72.2305	1/1:90:1,89:1:36:89:3177:-282.555,-23.4944,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:93:0,93:0:0:93:3316:-298.657,-27.9958,0	0/1:58:29,29:29:1040:29:1040:-76.4546,0,-76.4546	0/1:210:107,103:107:3848:103:3700:-269.985,0,-283.298	0/1:39:20,19:20:720:19:684:-50.1502,0,-53.3886	0/1:46:27,19:27:972:19:658:-45.6922,0,-73.9505	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:81:43,38:43:1548:38:1364:-98.6773,0,-115.23	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:53:0,52:0:0:52:1872:-168.399,-15.6536,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	0/1:43:18,25:18:648:25:892:-67.6554,0,-45.7076	0/1:37:26,11:26:936:11:396:-24.8446,0,-73.4214	1/1:194:0,194:0:0:194:6927:-623.491,-58.3998,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0
chr07	5457969	.	C	T	33205.6	PASS	AB=0.567042;ABP=131.411;AC=51;AF=0.274194;AN=186;AO=1869;CIGAR=1X;DP=6163;DPB=6163;DPRA=0.984095;EPP=3975.1;EPPR=9107.09;GTI=1;LEN=1;MEANALT=1.01887;MQM=59.9765;MQMR=59.9802;NS=93;NUMALT=1;ODDS=0.384133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66885;QR=153558;RO=4292;RPL=1859;RPP=3975.1;RPPR=9115.67;RPR=10;RUN=1;SAF=0;SAP=4061.49;SAR=1869;SRF=1;SRP=9314.29;SRR=4291;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:43:17,26:17:612:26:936:-71.6152,0,-42.4691	0/1:102:42,60:42:1508:60:2145:-162.611,0,-105.292	0/1:227:87,140:87:3105:140:5015:-383.135,0,-211.342	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.628	0/1:78:33,45:33:1184:45:1620:-122.61,0,-83.388	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/1:106:44,62:44:1567:62:2219:-168.065,0,-109.411	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:41:20,21:20:720:21:756:-56.025,0,-52.7865	0/1:31:11,20:11:396:20:702:-54.1697,0,-26.6508	0/1:36:16,20:16:563:20:720:-54.2917,0,-40.1621	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:25:10,15:10:360:15:521:-39.6906,0,-25.2186	0/1:11:6,5:6:201:5:180:-13.2407,0,-15.1057	0/1:93:45,48:45:1616:48:1712:-126.37,0,-117.734	0/0:167:167,0:167:5996:0:0:0,-50.272,-539.741	0/1:32:13,19:13:468:19:684:-52.2574,0,-32.8267	0/1:78:38,39:38:1353:39:1404:-103.12,0,-98.5294	0/1:76:40,36:40:1436:36:1288:-93.3453,0,-106.655	0/1:21:7,14:7:252:14:504:-39.3765,0,-16.7073	0/0:151:151,0:151:5432:0:0:0,-45.4555,-489.006	0/0:142:142,0:142:5088:0:0:0,-42.7463,-458.063	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:229:94,135:94:3357:135:4833:-366.187,0,-233.409	0/0:108:105,3:105:3717:3:108:0,-22.4361,-324.55	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/1:19:10,9:10:347:9:324:-23.7863,0,-25.844	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:108:46,62:46:1652:62:2224:-167.913,0,-116.457	0/1:61:36,25:36:1273:25:900:-62.9582,0,-96.5081	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	.:.:.:.:.:.:.:.	0/1:97:40,57:40:1440:57:2029:-153.681,0,-100.698	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:66:24,42:24:849:42:1512:-116.507,0,-56.8598	0/1:25:14,11:14:491:11:396:-28.457,0,-36.9954	0/1:31:11,20:11:396:20:720:-55.7968,0,-26.6508	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:116:47,69:47:1684:69:2468:-187.455,0,-116.928	0/0:66:66,0:66:2319:0:0:0,-19.868,-208.966	0/1:130:59,71:59:2105:71:2541:-189.805,0,-150.584	0/1:118:63,55:63:2264:55:1965:-141.602,0,-168.501	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:39:22,17:22:788:17:597:-42.316,0,-59.5046	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/1:11:8,3:8:280:3:108:-6.76384,0,-22.228	0/1:123:57,66:57:2037:66:2372:-176.711,0,-146.574	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.668	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:334:334,0:334:11890:0:0:0,-100.544,-1069.95	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.792	0/1:54:25,29:25:900:29:1036:-77.2983,0,-65.0654	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:134:48,86:48:1728:86:3079:-236.999,0,-115.467	0/1:139:40,99:40:1436:99:3521:-275.256,0,-87.6945	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:39:20,19:20:711:19:684:-50.1502,0,-52.5755	0/1:29:17,12:17:604:12:432:-30.4913,0,-45.9607	0/0:105:105,0:105:3757:0:0:0,-31.6081,-338.138	0/1:60:12,48:12:432:48:1724:-137.384,0,-21.1594	0/0:101:101,0:101:3605:0:0:0,-30.404,-324.655	0/0:234:234,0:234:8389:0:0:0,-70.441,-755.011	0/1:29:4,25:4:144:25:881:-70.876,0,-4.58375	0/0:91:90,1:90:3217:1:36:0,-23.7955,-286.153	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/1:58:28,30:28:1008:30:1061:-78.3387,0,-73.5766	0/1:212:104,108:104:3740:108:3872:-284.856,0,-272.981	0/1:38:19,19:19:684:19:680:-50.09,0,-50.4512	0/1:48:22,26:22:788:26:928:-69.3888,0,-56.7954	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:82:38,44:38:1364:44:1572:-117.087,0,-98.3763	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:23:14,9:14:500:9:324:-22.5822,0,-38.4125	0/1:42:24,18:24:864:18:648:-46.0086,0,-65.4393	0/1:38:11,27:11:396:27:960:-75.2771,0,-24.5436	0/0:197:196,0:196:7037:0:0:0,-59.0019,-633.027	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47
chr07	5501179	.	C	G	14821	PASS	AB=0.3198;ABP=1468.82;AC=53;AF=0.281915;AN=188;AO=1670;CIGAR=1X;DP=10449;DPB=10449;DPRA=0.969974;EPP=3543.03;EPPR=19022.9;GTI=10;LEN=1;MEANALT=1.14286;MQM=37.9222;MQMR=59.587;NS=94;NUMALT=1;ODDS=1.04646;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55709;QR=307392;RO=8767;RPL=1669;RPP=3620.69;RPPR=19022.9;RPR=1;RUN=1;SAF=1659;SAP=3534.45;SAR=11;SRF=8767;SRP=19040.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:19,6:19:663:6:175:-7.56758,0,-52.4677	0/1:153:104,49:104:3626:49:1656:-86.1912,0,-280.357	0/1:128:74,53:74:2584:53:1787:-106.585,0,-193.691	0/1:174:129,45:129:4558:45:1522:-78.4219,0,-357.983	0/0:96:96,0:96:3383:0:0:0,-28.8989,-304.658	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:136:136,0:136:4805:0:0:0,-40.9401,-432.582	0/1:188:129,59:129:4491:59:2002:-103.56,0,-347.535	0/0:83:83,0:83:2893:0:0:0,-24.9855,-260.462	0/1:120:78,42:78:2741:42:1372:-83.2639,0,-210.788	0/0:100:100,0:100:3514:0:0:0,-30.103,-316.453	0/0:69:69,0:69:2364:0:0:0,-20.7711,-213.011	0/0:84:84,0:84:2911:0:0:0,-25.2865,-262.1	0/1:75:49,26:49:1659:26:853:-48.3996,0,-126.691	0/1:58:44,14:44:1555:14:443:-20.633,0,-122.75	0/1:56:38,18:38:1308:18:609:-34.4035,0,-101.151	0/0:107:107,0:107:3704:0:0:0,-32.2102,-333.47	0/1:46:27,19:27:947:19:604:-35.81,0,-71.6717	0/1:27:22,5:22:784:5:171:-6.61897,0,-62.3765	0/1:159:115,44:115:4042:44:1463:-77.5694,0,-316.094	0/0:156:155,0:155:5437:0:0:0,-46.6596,-489.046	0/1:86:51,35:51:1809:35:1174:-75.1139,0,-137.148	0/1:42:29,13:29:1011:13:441:-24.5218,0,-78.6525	0/1:165:121,43:121:4237:43:1421:-68.8205,0,-331.566	0/1:93:78,15:78:2689:15:502:-14.0428,0,-214.246	0/0:433:433,0:433:15255:0:0:0,-130.346,-1372.52	0/0:264:264,0:264:9288:0:0:0,-79.4719,-835.543	0/0:35:35,0:35:1231:0:0:0,-10.536,-111.093	0/1:243:157,86:157:5543:86:2856:-173.702,0,-425.833	0/0:218:214,3:214:7560:3:93:0,-57.8321,-672.457	0/0:140:140,0:140:4945:0:0:0,-42.1442,-445.184	0/1:6:3,3:3:108:3:102:-6.63731,0,-8.26899	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.4893	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:21:21,0:21:716:0:0:0,-6.32163,-64.7546	0/1:6:5,1:5:171:1:27:-0.814954,0,-13.9193	0/1:182:129,52:129:4484:52:1749:-96.3564,0,-348.676	0/1:219:141,77:141:4948:77:2564:-146.28,0,-379.262	0/1:58:42,16:42:1486:16:517:-24.2838,0,-116.436	0/1:6:5,1:5:180:1:36:-1.49284,0,-14.735	0/1:148:92,56:92:3219:56:1879:-109.518,0,-245.33	0/1:21:9,12:9:320:12:420:-29.547,0,-22.8207	0/1:149:107,42:107:3747:42:1409:-75.3253,0,-292.484	0/1:77:56,21:56:1978:21:673:-34.0884,0,-155.102	0/1:54:34,20:34:1184:20:644:-37.7957,0,-90.6039	0/0:86:86,0:86:3034:0:0:0,-25.8886,-273.201	0/0:191:190,0:190:6650:0:0:0,-57.1957,-598.159	0/1:235:164,71:164:5807:71:2381:-128.539,0,-451.989	0/0:208:208,0:208:7286:0:0:0,-62.6142,-655.669	0/1:200:131,69:131:4598:69:2343:-137.37,0,-353.748	0/1:137:102,34:102:3625:34:1156:-57.6277,0,-285.155	0/0:23:23,0:23:801:0:0:0,-6.92369,-72.4067	0/1:121:84,37:84:2905:37:1267:-67.98,0,-225.22	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.4487	0/1:9:4,5:4:144:5:172:-11.489,0,-10.6043	0/1:159:111,48:111:3907:48:1608:-82.7253,0,-303.931	0/1:13:11,2:11:383:2:59:-1.55038,0,-30.8872	1/1:1:0,1:0:0:1:36:-3.3876,-0.30103,0	0/0:26:26,0:26:901:0:0:0,-7.82678,-81.3998	0/0:63:63,0:63:2202:0:0:0,-18.9649,-198.438	0/0:128:128,0:128:4410:0:0:0,-38.5318,-397.074	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4807	0/0:376:375,0:375:13222:0:0:0,-112.886,-1189.36	0/0:393:391,2:391:13729:2:72:0,-111.715,-1227.58	0/1:117:62,55:62:2147:55:1846:-117.478,0,-158.261	0/0:107:107,0:107:3776:0:0:0,-32.2102,-340.018	0/1:183:130,53:130:4547:53:1774:-94.6632,0,-354.275	0/1:55:25,30:25:879:30:1025:-70.5953,0,-62.8678	0/1:25:17,8:17:595:8:266:-14.4978,0,-46.3463	0/0:69:69,0:69:2411:0:0:0,-20.7711,-217.233	0/1:74:54,20:54:1910:20:658:-35.397,0,-149.895	0/1:27:15,12:15:532:12:414:-27.8145,0,-40.0853	0/0:99:99,0:99:3509:0:0:0,-29.802,-316.009	0/1:80:60,20:60:2062:20:657:-28.7362,0,-161.717	0/0:205:205,0:205:7229:0:0:0,-61.7111,-650.607	0/0:230:230,0:230:8092:0:0:0,-69.2369,-728.208	0/1:108:90,18:90:3176:18:621:-17.0153,0,-253.518	0/0:183:183,0:183:6511:0:0:0,-55.0885,-586.002	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:190:190,0:190:6763:0:0:0,-57.1957,-608.623	0/1:124:87,37:87:3033:37:1222:-61.2175,0,-234.614	0/1:288:212,76:212:7393:76:2564:-130.846,0,-578.7	0/1:111:62,49:62:2127:49:1649:-105.282,0,-158.243	0/1:64:39,25:39:1366:25:838:-52.4137,0,-103.965	0/0:108:107,0:107:3716:0:0:0,-32.2102,-334.265	0/1:128:75,53:75:2638:53:1721:-107.916,0,-199.057	0/0:49:49,0:49:1706:0:0:0,-14.7505,-153.796	0/0:87:87,0:87:3014:0:0:0,-26.1896,-271.117	0/0:86:86,0:86:2962:0:0:0,-25.8886,-266.753	0/1:31:21,10:21:735:10:344:-18.651,0,-57.1313	0/1:91:65,25:65:2230:25:814:-40.6559,0,-173.459	0/1:53:21,32:21:735:32:970:-69.0238,0,-50.5145	0/0:221:220,1:220:7634:1:36:0,-62.9319,-682.515	0/0:118:116,1:116:4063:1:32:0,-32.4527,-362.716
chr07	5501210	.	CACA	CACT	126733	PASS	AB=0.461448;ABP=68.6431;AC=136;AF=0.723404;AN=188;AO=6179;CIGAR=3M1X;DP=8956;DPB=8956;DPRA=0;EPP=13403.2;EPPR=5935.48;GTI=2;LEN=1;MEANALT=1.38298;MQM=59.9851;MQMR=60;NS=94;NUMALT=1;ODDS=0.972538;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220577;QR=95985;RO=2736;RPL=1;RPP=13411.9;RPPR=5935.48;RPR=6178;RUN=1;SAF=3;SAP=13394.5;SAR=6176;SRF=0;SRP=5944.16;SRR=2736;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:88:46,40:46:1579:40:1424:-102.357,0,-116.297	0/1:77:39,38:39:1384:38:1368:-100.242,0,-101.679	0/1:115:63,51:63:2227:51:1817:-129.23,0,-166.115	0/1:272:148,122:148:5241:122:4353:-310.307,0,-390.193	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:122:0,120:0:0:120:4288:-385.739,-36.1236,0	0/1:207:113,91:113:3968:91:3248:-230.772,0,-295.546	1/1:104:0,102:0:0:102:3643:-327.839,-30.7051,0	0/1:80:43,36:43:1495:36:1275:-90.9119,0,-110.699	1/1:33:0,30:0:0:30:1072:-96.4692,-9.0309,0	1/1:93:0,93:0:0:93:3294:-296.68,-27.9958,0	1/1:78:0,76:0:0:76:2712:-244.042,-22.8783,0	0/1:34:16,18:16:573:18:640:-47.6943,0,-41.669	0/1:76:31,45:31:1083:45:1598:-121.202,0,-74.8992	0/1:37:17,20:17:593:20:712:-53.2685,0,-42.5581	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:21:8,13:8:282:13:464:-35.7759,0,-19.3998	0/1:18:5,13:5:180:13:468:-37.0411,0,-11.1335	0/1:283:155,127:155:5500:127:4528:-322.439,0,-409.879	1/1:180:2,178:2:72:178:6349:-564.664,-47.3487,0	0/1:102:56,46:56:1941:46:1635:-116.733,0,-144.258	0/1:123:66,57:66:2258:57:2048:-147.565,0,-166.452	0/1:26:12,14:12:417:14:500:-37.5094,0,-30.0352	0/1:113:68,45:68:2374:45:1591:-109.463,0,-179.901	1/1:280:0,279:0:0:279:9961:-896.149,-83.9874,0	1/1:254:0,254:0:0:254:9054:-814.834,-76.4616,0	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:303:163,140:163:5725:140:5009:-359.744,0,-424.161	1/1:107:2,103:2:72:103:3687:-325.218,-25.1088,0	1/1:97:0,97:0:0:97:3460:-311.613,-29.1999,0	0/1:5:4,1:4:138:1:36:-2.09312,0,-11.2547	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:12:8,4:8:254:4:144:-9.70126,0,-19.557	0/1:194:106,88:106:3708:88:3156:-225.865,0,-275.527	0/1:107:65,42:65:2285:42:1493:-102.451,0,-173.702	0/1:31:14,17:14:495:17:596:-44.6297,0,-35.5511	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:187:104,82:104:3681:82:2917:-206.414,0,-275.143	0/1:31:11,20:11:386:20:711:-54.9837,0,-25.7436	0/1:134:57,77:57:1994:77:2736:-206.146,0,-139.395	0/1:55:31,23:31:1089:23:824:-57.8679,0,-81.7031	0/1:53:28,25:28:1001:25:896:-65.0058,0,-74.4512	1/1:154:0,152:0:0:152:5436:-489.084,-45.7566,0	1/1:161:0,161:0:0:161:5731:-515.909,-48.4658,0	0/1:221:125,96:125:4363:96:3422:-241.665,0,-326.324	1/1:101:0,101:0:0:101:3611:-325.196,-30.404,0	0/1:127:55,72:55:1927:72:2584:-194.578,0,-135.473	0/1:64:43,21:43:1507:21:752:-48.7403,0,-116.655	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	0/1:136:68,66:68:2398:66:2360:-171.959,0,-175.379	1/1:62:0,61:0:0:61:2176:-195.747,-18.3628,0	0/1:6:3,3:3:101:3:108:-8.26899,0,-7.61719	0/1:190:111,79:111:3894:79:2832:-197.923,0,-293.463	0/1:50:25,25:25:873:25:900:-66.2695,0,-63.8332	0/1:6:4,2:4:132:2:72:-5.03054,0,-10.3992	1/1:14:0,14:0:0:14:490:-44.4305,-4.21442,0	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0	1/1:98:0,97:0:0:97:3460:-311.402,-29.1999,0	0/1:6:4,2:4:136:2:72:-5.03054,0,-10.7688	1/1:217:0,217:0:0:217:7771:-699.42,-65.3235,0	1/1:195:7,188:7:235:188:6713:-582.769,-37.2239,0	0/1:44:25,19:25:871:19:669:-47.2886,0,-65.4591	1/1:116:0,116:0:0:116:4164:-374.941,-34.9195,0	0/1:176:103,73:103:3589:73:2620:-183.066,0,-270.239	0/1:136:88,48:88:3101:48:1705:-112.795,0,-238.378	0/1:18:8,10:8:274:10:352:-26.5997,0,-19.5729	1/1:55:0,54:0:0:54:1907:-171.624,-16.2556,0	0/1:36:15,21:15:521:21:756:-57.5301,0,-36.3803	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	1/1:170:0,168:0:0:168:5982:-538.201,-50.573,0	0/1:127:71,56:71:2498:56:2008:-142.763,0,-186.843	1/1:127:0,126:0:0:126:4489:-403.969,-37.9298,0	1/1:120:0,117:0:0:117:4200:-377.823,-35.2205,0	0/1:94:40,54:40:1407:54:1932:-145.849,0,-98.6288	1/1:90:1,88:1:36:88:3160:-281.026,-23.5532,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:117:0,117:0:0:117:4177:-376.112,-35.2205,0	0/1:125:66,59:66:2346:59:2116:-153.08,0,-173.77	0/1:334:177,157:177:6208:157:5621:-405.465,0,-458.284	0/1:46:17,29:17:609:29:1037:-79.7963,0,-41.2952	0/1:63:40,23:40:1405:23:820:-55.1576,0,-107.78	1/1:57:0,56:0:0:56:1995:-179.483,-16.8577,0	0/1:123:54,69:54:1871:69:2452:-183.909,0,-131.64	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:61:0,60:0:0:60:2131:-191.737,-18.0618,0	1/1:78:0,78:0:0:78:2751:-247.834,-23.4803,0	0/1:17:7,10:7:246:10:356:-27.2637,0,-17.3645	0/1:47:25,22:25:874:22:788:-57.0964,0,-64.8279	0/1:91:62,29:62:2172:29:1036:-66.1596,0,-168.353	1/1:157:0,157:0:0:157:5628:-506.64,-47.2617,0	1/1:102:0,101:0:0:101:3608:-324.567,-30.404,0
chr07	5503869	.	ATTAT	ATTAC	108665	PASS	AB=0.466092;ABP=48.2188;AC=135;AF=0.718085;AN=188;AO=5284;CIGAR=4M1X;DP=7743;DPB=7743;DPRA=16.6409;EPP=11364.4;EPPR=5218.94;GTI=2;LEN=1;MEANALT=1.35484;MQM=59.9843;MQMR=59.9876;NS=94;NUMALT=1;ODDS=1.10854;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=0;PRO=0;QA=189127;QR=85726;RO=2418;RPL=13;RPP=11364.4;RPPR=5218.94;RPR=5271;RUN=1;SAF=5284;SAP=11477.1;SAR=0;SRF=2418;SRP=5253.63;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:17,9:17:596:9:324:-21.6791,0,-46.1406	0/1:121:60,61:60:2121:61:2176:-159.682,0,-154.734	0/1:95:37,57:37:1319:57:2039:-155.184,0,-90.4139	0/1:185:93,91:93:3284:91:3253:-237.24,0,-240.033	1/1:41:0,41:0:0:41:1467:-132.325,-12.3422,0	1/1:44:0,41:0:0:41:1476:-132.779,-12.3422,0	1/1:57:0,57:0:0:57:2033:-183.24,-17.1587,0	0/1:116:72,44:72:2545:44:1568:-106.492,0,-194.382	1/1:80:1,78:1:36:78:2796:-248.326,-20.498,0	0/1:64:28,36:28:987:36:1292:-97.3178,0,-69.8764	1/1:44:0,43:0:0:43:1540:-138.533,-12.9443,0	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:64:0,63:0:0:63:2268:-204.071,-18.9649,0	0/1:71:31,40:31:1084:40:1436:-108.16,0,-76.4939	0/1:59:29,30:29:1003:30:1063:-78.2192,0,-72.8184	0/1:46:30,16:30:1057:16:557:-36.6082,0,-81.5921	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:53:25,28:25:876:28:999:-74.2699,0,-63.2009	0/1:33:14,19:14:503:19:680:-51.5952,0,-35.6737	0/1:159:91,68:91:3239:68:2440:-171.991,0,-243.87	1/1:148:0,144:0:0:144:5146:-462.008,-43.3483,0	0/1:107:76,31:76:2682:31:1112:-68.1811,0,-209.417	0/1:82:53,28:53:1883:28:1008:-66.2931,0,-145.005	0/1:98:42,55:42:1486:55:1968:-147.933,0,-104.573	0/1:58:20,38:20:691:38:1364:-105.601,0,-45.0511	1/1:257:1,256:1:36:256:9175:-822.12,-73.7664,0	1/1:118:0,117:0:0:117:4137:-372.152,-35.2205,0	1/1:37:0,37:0:0:37:1311:-118.291,-11.1381,0	0/1:219:113,106:113:3998:106:3790:-275.372,0,-294.089	1/1:107:6,101:6:208:101:3609:-305.956,-13.1512,0	1/1:87:0,87:0:0:87:3124:-281.385,-26.1896,0	0/1:3:1,2:1:35:2:72:-5.93363,0,-2.59554	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:273:130,142:130:4632:142:5084:-375.464,0,-334.805	0/1:219:122,97:122:4327:97:3476:-247.126,0,-323.686	0/1:36:21,15:21:752:15:540:-38.0995,0,-57.1692	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:83:44,39:44:1577:39:1387:-100.141,0,-117.236	0/1:16:7,9:7:251:9:324:-24.6894,0,-18.1214	0/1:169:76,90:76:2668:90:3228:-240.44,0,-190.064	0/1:80:34,46:34:1210:46:1656:-125.246,0,-85.1236	0/1:64:30,34:30:1070:34:1216:-90.4806,0,-77.3466	1/1:77:0,76:0:0:76:2717:-244.471,-22.8783,0	1/1:62:0,62:0:0:62:2219:-199.974,-18.6639,0	0/1:125:70,55:70:2498:55:1976:-140.485,0,-187.445	1/1:102:0,101:0:0:101:3632:-326.704,-30.404,0	0/1:148:78,69:78:2766:69:2472:-178.123,0,-204.571	0/1:142:72,70:72:2545:70:2507:-183.135,0,-186.556	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	0/1:80:51,28:51:1823:28:1000:-66.1743,0,-140.211	1/1:19:0,19:0:0:19:672:-60.8063,-5.71957,0	0/1:22:13,9:13:453:9:324:-22.8832,0,-34.478	0/1:101:56,45:56:1983:45:1620:-115.686,0,-148.341	0/1:40:26,14:26:905:14:504:-33.6569,0,-69.7223	0/1:8:5,3:5:179:3:108:-7.66693,0,-14.0522	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:54:0,52:0:0:52:1872:-168.399,-15.6536,0	1/1:126:1,124:1:36:124:4451:-397.16,-34.3903,0	0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4604	1/1:178:0,178:0:0:178:6377:-574.017,-53.5833,0	1/1:133:0,133:0:0:133:4768:-429.276,-40.037,0	0/1:90:43,47:43:1514:47:1651:-121.775,0,-109.46	1/1:52:0,52:0:0:52:1845:-166.329,-15.6536,0	0/1:127:71,56:71:2525:56:2008:-142.763,0,-189.272	0/1:87:59,28:59:2112:28:1004:-64.4863,0,-164.16	0/1:22:12,9:12:432:9:324:-22.8244,0,-32.5397	1/1:60:0,55:0:0:55:1968:-177.035,-16.5567,0	0/1:88:50,36:50:1766:36:1286:-89.8234,0,-133.003	0/1:19:9,10:9:316:10:360:-27.0247,0,-23.0592	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:66:38,28:38:1336:28:987:-69.2751,0,-100.672	1/1:100:2,97:2:72:97:3467:-305.424,-23.2852,0	1/1:169:0,168:0:0:168:6009:-540.631,-50.573,0	0/1:77:49,28:49:1742:28:1008:-67.857,0,-133.884	1/1:98:1,96:1:36:96:3452:-307.293,-25.9615,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:114:0,114:0:0:114:4092:-368.465,-34.3174,0	0/1:80:41,39:41:1442:39:1383:-100.686,0,-105.991	0/1:147:85,62:85:3017:62:2232:-156.892,0,-227.511	0/1:118:58,60:58:2085:60:2152:-158.426,0,-151.772	0/1:50:27,23:27:970:23:822:-59.2515,0,-72.5663	1/1:106:0,106:0:0:106:3791:-341.388,-31.9092,0	0/1:154:85,67:85:3020:67:2400:-170.14,0,-225.915	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:84:0,84:0:0:84:3007:-270.861,-25.2865,0	1/1:40:0,40:0:0:40:1431:-129.087,-12.0412,0	0/1:41:18,23:18:639:23:824:-62.1411,0,-45.4969	0/1:78:35,42:35:1251:42:1488:-110.673,0,-89.3567	0/1:73:47,25:47:1676:25:888:-58.2532,0,-129.142	1/1:100:1,99:1:36:99:3545:-315.658,-26.5047,0	1/1:94:0,94:0:0:94:3363:-302.886,-28.2968,0
chr07	5579178	.	GTA	CTT,GTT	196563	PASS	AB=0.535375,0.464134;ABP=69.3793,71.2356;AC=134,54;AF=0.712766,0.287234;AN=188;AO=7763,2846;CIGAR=1X1M1X,2M1X;DP=10616;DPB=10618;DPRA=0,1.10151;EPP=16860.2,6183.02;EPPR=7.35324;GTI=2;LEN=3,1;MEANALT=1.7234,2.04762;MQM=41.8047,29.6701;MQMR=45.5;NS=94;NUMALT=2;ODDS=2.10461;PAIRED=0,0;PAIREDR=0;PAO=3,3;PQA=72,72;PQR=0;PRO=0;QA=273024,101336;QR=62;RO=2;RPL=0,0;RPP=16860.2,6183.02;RPPR=7.35324;RPR=7763,2846;RUN=1,1;SAF=0,0;SAP=16860.2,6183.02;SAR=7763,2846;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:62:0,21,41:0:0:21,41:723,1457:-144.127,-86.9948,-80.6732,-57.4446,0,-45.1024	1/2:122:0,82,40:0:0:82,40:2867,1417:-314.558,-88.8912,-64.2067,-225.966,0,-213.925	1/2:155:0,82,73:0:0:82,73:2881,2601:-384.23,-156.959,-132.275,-227.575,0,-205.6	1/2:207:0,113,94:0:0:113,94:4006,3364:-531.891,-216.749,-182.732,-315.456,0,-287.159	1/1:98:0,96,2:0:0:96,2:3373,64:-295.554,-28.8989,0,-290.399,-23.4235,-289.797	1/1:43:0,42,1:0:0:42,1:1462,36:-128.593,-12.6433,0,-126.282,-10.0415,-125.981	1/1:149:0,149,0:0:0:149,0:5196,0:-453.65,-44.8535,0,-453.65,-44.8535,-453.65	1/2:238:0,110,128:0:0:110,128:3807,4577:-583.749,-282.771,-249.658,-301.288,0,-262.756	1/1:153:0,152,1:0:0:152,1:5366,36:-466.228,-45.7566,0,-464.227,-43.4989,-463.926	1/2:93:1,48,44:1:36:48,44:1690,1572:-231.52,-98.4814,-86.8847,-130.453,0,-120.059	1/1:78:0,78,0:0:0:78,0:2770,0:-243.412,-23.4803,0,-243.412,-23.4803,-243.412	1/1:88:0,86,1:0:0:86,1:3018,36:-263.569,-25.8886,0,-260.631,-22.9473,-260.33	1/1:84:0,84,0:0:0:84,0:2965,0:-259.782,-25.2865,0,-259.782,-25.2865,-259.782	1/2:86:0,52,34:0:0:52,34:1818,1212:-221.172,-77.566,-61.9124,-143.913,0,-133.678	1/2:76:0,37,39:0:0:37,39:1316,1377:-192.622,-88.7759,-77.6378,-104.162,0,-92.4221	1/2:68:0,34,34:0:0:34,34:1182,1207:-172.057,-78.2856,-68.0505,-94.0856,0,-83.8506	1/1:49:0,49,0:0:0:49,0:1725,0:-152.21,-14.7505,0,-152.21,-14.7505,-152.21	1/2:55:0,25,30:0:0:25,30:866,1059:-134.424,-66.1834,-58.6576,-68.55,0,-59.5191	1/2:40:0,18,22:0:0:18,22:646,788:-100.381,-49.7934,-44.3749,-50.9056,0,-44.2829	1/2:195:0,114,81:0:0:114,81:4021,2908:-505.04,-186.599,-152.282,-318.752,0,-294.369	1/1:206:0,206,0:0:0:206,0:7246,0:-633.595,-62.0122,0,-633.595,-62.0122,-633.595	1/2:112:0,51,61:0:0:51,61:1773,2177:-277.982,-140.143,-124.79,-138.152,0,-119.79	1/1:46:0,46,0:0:0:46,0:1607,0:-141.474,-13.8474,0,-141.474,-13.8474,-141.474	1/2:186:0,119,67:0:0:119,67:4209,2381:-483.316,-150.871,-115.048,-332.75,0,-312.581	1/2:63:0,20,43:0:0:20,43:695,1544:-153.068,-97.9098,-91.8892,-55.4804,0,-42.5361	1/2:324:1,188,135:1:26:188,135:6574,4783:-824.397,-307.011,-252.454,-515.7,0,-477.097	1/1:200:0,200,0:0:0:200,0:7028,0:-615.42,-60.206,0,-615.42,-60.206,-615.42	1/1:32:0,32,0:0:0:32,0:1133,0:-99.2418,-9.63296,0,-99.2418,-9.63296,-99.2418	1/2:273:0,158,115:0:0:158,115:5567,4136:-702.323,-263.509,-215.946,-439.125,0,-404.506	1/1:118:0,115,3:0:0:115,3:4015,104:-350.18,-34.6185,0,-343.501,-27.6566,-342.598	1/1:130:0,129,1:0:0:129,1:4560,36:-398.075,-38.8329,0,-395.914,-36.3977,-395.613	1/2:15:0,4,11:0:0:4,11:136,392:-36.283,-25.4603,-24.2562,-11.1442,0,-7.83286	1/1:39:0,39,0:0:0:39,0:1385,0:-121.36,-11.7402,0,-121.36,-11.7402,-121.36	1/1:12:0,12,0:0:0:12,0:424,0:-37.5188,-3.61236,0,-37.5188,-3.61236,-37.5188	1/2:15:0,12,3:0:0:12,3:428,108:-42.4985,-9.17208,-5.55972,-33.6827,0,-32.7796	1/2:14:0,6,8:0:0:6,8:204,288:-34.722,-18.468,-16.6618,-16.5675,0,-14.1592	1/2:232:0,103,129:0:0:103,129:3619,4632:-581.158,-296.753,-265.747,-284.722,0,-245.89	1/2:239:0,116,123:0:0:116,123:4091,4359:-598.155,-277.236,-242.317,-321.232,0,-284.205	1/2:64:0,33,30:0:0:33,30:1169,1068:-160.702,-67.7218,-57.7878,-92.9369,0,-83.906	1/2:3:0,2,1:0:0:2,1:72,36:-8.37871,-2.60173,-1.99967,-6.08786,0,-5.78683	1/2:126:0,71,55:0:0:71,55:2489,1968:-320.38,-124.166,-102.793,-196.522,0,-179.965	1/2:41:0,27,14:0:0:27,14:972,491:-108.58,-31.3769,-23.2491,-77.5079,0,-73.2935	1/2:197:0,111,86:0:0:111,86:3887,3046:-499.381,-192.266,-158.852,-307.422,0,-281.533	1/2:54:0,26,28:0:0:26,28:905,973:-135.603,-63.863,-56.0363,-72.054,0,-63.6252	1/2:55:0,32,23:0:0:32,23:1113,824:-139.482,-52.7205,-43.0876,-87.068,0,-80.1444	1/1:176:0,175,1:0:0:175,1:6112,36:-535.212,-52.6803,0,-532.974,-50.1602,-532.673	1/1:159:0,159,0:0:0:159,0:5624,0:-491.475,-47.8638,0,-491.475,-47.8638,-491.475	1/2:346:0,207,139:0:0:207,139:7305,4964:-893.355,-319.399,-257.086,-574.266,0,-532.423	1/1:147:0,147,0:0:0:147,0:5148,0:-451.302,-44.2514,0,-451.302,-44.2514,-451.302	1/2:266:0,119,147:0:0:119,147:4212,5223:-666.874,-336.846,-301.023,-330.346,0,-286.094	1/2:193:0,101,92:0:0:101,92:3565,3281:-490.367,-210.766,-180.362,-279.915,0,-252.22	1/1:7:0,7,0:0:0:7,0:237,0:-21.2085,-2.10721,0,-21.2085,-2.10721,-21.2085	1/2:141:0,82,59:0:0:82,59:2885,2112:-358.174,-130.107,-105.423,-228.372,0,-210.611	1/1:27:0,27,0:0:0:27,0:945,0:-83.1702,-8.12781,0,-83.1702,-8.12781,-83.1702	1/2:22:0,9,13:0:0:9,13:313,468:-55.267,-30.3392,-27.63,-25.248,0,-21.3346	1/2:133:0,67,66:0:0:67,66:2388,2352:-336.988,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chr07	5579207	.	GGAA	GGAC,ACAC	204687	PASS	AB=0.523082,0.472428;ABP=31.7801,43.9623;AC=134,53;AF=0.712766,0.281915;AN=188;AO=7723,2939;CIGAR=3M1X,2X1M1X;DP=10728;DPB=10728;DPRA=0,1.14852;EPP=16026.1,6384.97;EPPR=18.2106;GTI=2;LEN=1,4;MEANALT=2.21277,2.61667;MQM=42.0155,29.5662;MQMR=55.2857;NS=94;NUMALT=2;ODDS=0.611683;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=276149,104003;QR=237;RO=7;RPL=7636,2939;RPP=16026.1,6384.97;RPPR=18.2106;RPR=87,0;RUN=1,1;SAF=0,0;SAP=16773.3,6384.97;SAR=7723,2939;SRF=0;SRP=18.2106;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:62:0,21,41:0:0:21,41:752,1433:-146.046,-86.4911,-80.1694,-59.8758,0,-47.5336	1/2:121:0,80,41:0:0:80,41:2876,1470:-318.363,-91.8564,-67.774,-226.811,0,-214.469	1/2:158:0,83,74:0:0:83,74:2938,2628:-390.882,-158.649,-133.663,-232.248,0,-209.972	1/2:213:0,112,99:0:0:112,99:4005,3520:-543.722,-227.106,-193.39,-316.647,0,-286.845	1/1:97:0,97,0:0:0:97,0:3472,0:-304.001,-29.1999,0,-304.001,-29.1999,-304.001	1/1:46:0,45,1:0:0:45,1:1593,36:-139.954,-13.5464,0,-137.644,-10.9446,-137.343	1/1:149:0,147,0:0:0:147,0:5227,0:-455.648,-44.2514,0,-455.648,-44.2514,-455.648	1/2:236:0,106,129:0:0:106,129:3781,4579:-582.258,-283.538,-251.629,-298.701,0,-259.868	1/1:149:0,148,1:0:0:148,1:5309,36:-459.033,-44.5524,0,-457.032,-42.2948,-456.731	1/2:97:0,49,48:0:0:49,48:1752,1681:-248.342,-110.093,-95.3427,-138.565,0,-124.116	1/1:79:0,79,0:0:0:79,0:2844,0:-249.691,-23.7814,0,-249.691,-23.7814,-249.691	1/1:88:1,86,0:1:34:86,0:3050,0:-263.683,-23.1058,0,-263.984,-25.8886,-266.742	1/1:84:0,84,0:0:0:84,0:3016,0:-264.046,-25.2865,0,-264.046,-25.2865,-264.046	1/2:87:0,52,35:0:0:52,35:1872,1231:-226.975,-79.1777,-63.5242,-148.108,0,-137.572	1/2:77:0,37,40:0:0:37,40:1328,1433:-196.719,-91.966,-80.8278,-105.072,0,-93.031	1/2:69:0,35,34:0:0:35,34:1256,1199:-177.086,-77.3933,-66.8573,-100.01,0,-89.7748	1/1:48:0,48,0:0:0:48,0:1728,0:-152.122,-14.4494,0,-152.122,-14.4494,-152.122	1/2:58:0,25,33:0:0:25,33:894,1160:-143.624,-72.8911,-65.3653,-71.051,0,-61.117	1/2:42:0,17,24:0:0:17,24:612,846:-102.206,-53.7755,-48.6579,-48.46,0,-41.2353	1/2:200:0,118,82:0:0:118,82:4206,2913:-520.654,-187.451,-151.93,-333.515,0,-308.83	1/1:204:0,202,0:0:0:202,0:7225,0:-631.684,-60.8081,0,-631.684,-60.8081,-631.684	1/2:115:0,50,65:0:0:50,65:1787,2302:-288.111,-149.299,-134.248,-139.131,0,-119.564	1/1:46:0,46,0:0:0:46,0:1637,0:-143.852,-13.8474,0,-143.852,-13.8474,-143.852	1/2:191:0,121,70:0:0:121,70:4318,2496:-499.982,-158.3,-121.876,-341.988,0,-320.916	1/2:65:0,20,45:0:0:20,45:712,1612:-159.019,-102.488,-96.467,-56.8602,0,-43.3139	1/2:324:0,186,138:0:0:186,138:6651,4912:-842.23,-317.81,-261.819,-524.733,0,-483.191	1/1:203:0,201,0:0:0:201,0:7204,0:-630.305,-60.507,0,-630.305,-60.507,-630.305	1/1:32:0,32,0:0:0:32,0:1144,0:-100.137,-9.63296,0,-100.137,-9.63296,-100.137	1/2:277:0,156,119:0:0:156,119:5600,4196:-711.935,-269.845,-222.884,-442.158,0,-406.335	1/1:114:0,107,3:0:0:107,3:3830,104:-335.23,-32.2102,0,-328.551,-25.5284,-327.648	1/1:132:0,131,1:0:0:131,1:4681,36:-408.508,-39.4349,0,-406.347,-36.9998,-406.046	1/2:15:0,4,11:0:0:4,11:129,396:-35.7625,-25.5649,-24.3608,-10.5067,0,-7.19534	1/1:38:0,38,0:0:0:38,0:1364,0:-119.441,-11.4391,0,-119.441,-11.4391,-119.441	1/1:12:0,12,0:0:0:12,0:432,0:-37.9715,-3.61236,0,-37.9715,-3.61236,-37.9715	0/1:15:3,12,0:3:108:12,0:428,0:-32.7596,0,-5.55972,-33.6627,-9.17208,-42.4785	1/2:14:0,5,9:0:0:5,9:180,324:-35.1565,-20.7799,-19.2748,-14.7054,0,-11.9961	1/2:232:1,101,129:1:36:101,129:3617,4588:-575.271,-291.51,-264.044,-281.123,0,-245.228	1/2:245:0,114,129:0:0:114,129:4092,4563:-613.239,-291.732,-257.414,-321.554,0,-282.721	1/2:65:0,34,31:0:0:34,31:1224,1089:-167.19,-69.7586,-59.5236,-97.7468,0,-88.4149	1/2:3:0,2,1:0:0:2,1:72,36:-8.37871,-2.60173,-1.99967,-6.08786,0,-5.78683	1/2:127:0,70,57:0:0:70,57:2520,1991:-325.637,-127.178,-106.105,-198.77,0,-181.612	1/2:42:0,27,15:0:0:27,15:972,539:-111.086,-33.8851,-25.7573,-77.5079,0,-72.9925	1/2:198:0,113,85:0:0:113,85:4049,3016:-509.964,-189.742,-155.725,-320.532,0,-294.944	1/2:56:0,25,31:0:0:25,31:900,1085:-142.141,-70.9674,-63.4417,-71.4952,0,-62.1633	1/2:57:0,28,27:0:0:28,27:991,952:-139.053,-61.1635,-52.7346,-77.9104,0,-69.7826	1/1:175:1,171,1:1:36:171,1:6110,36:-531.106,-48.5187,0,-529.169,-49.2406,-531.802	1/1:155:0,155,0:0:0:155,0:5568,0:-486.172,-46.6597,0,-486.172,-46.6597,-486.172	1/2:353:0,209,142:0:0:209,142:7453,5007:-910.052,-323.326,-260.411,-586.758,0,-544.012	1/1:149:0,148,0:0:0:148,0:5257,0:-461.052,-44.5524,0,-461.052,-44.5524,-461.052	1/2:271:0,118,150:0:0:118,150:4244,5301:-674.865,-342.608,-307.087,-332.294,0,-287.139	1/2:196:0,101,94:0:0:101,94:3605,3325:-497.489,-214.472,-184.068,-283.067,0,-254.77	1/1:8:0,8,0:0:0:8,0:288,0:-25.6462,-2.40824,0,-25.6462,-2.40824,-25.6462	1/2:141:0,81,59:0:0:81,59:2904,2100:-359.583,-129.469,-105.085,-230.198,0,-212.437	1/1:27:0,27,0:0:0:27,0:968,0:-85.1185,-8.12781,0,-85.1185,-8.12781,-85.1185	1/2:22:0,9,13:0:0:9,13:320,455:-55.439,-29.9217,-27.2124,-25.8403,0,-21.9269	1/2:135:0,67,67:0: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chr07	5715998	.	C	T	36909.3	PASS	AB=0.406889;ABP=444.586;AC=51;AF=0.271277;AN=188;AO=2396;CIGAR=1X;DP=10520;DPB=10520;DPRA=1.17022;EPP=5197.18;EPPR=17596.3;GTI=3;LEN=1;MEANALT=1.05172;MQM=59.9766;MQMR=59.9767;NS=94;NUMALT=1;ODDS=1.90467;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85686;QR=289924;RO=8114;RPL=0;RPP=5205.86;RPPR=17622.3;RPR=2396;RUN=1;SAF=2395;SAP=5197.18;SAR=1;SRF=8111;SRP=17596.3;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:17,5:17:604:5:180:-9.9294,0,-48.0679	0/1:154:92,62:92:3272:62:2216:-153.338,0,-248.343	0/1:116:77,39:77:2740:39:1392:-90.6595,0,-211.923	0/1:199:132,67:132:4728:67:2388:-155.271,0,-365.774	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:54:54,0:54:1912:0:0:0,-16.2556,-172.358	0/0:141:141,0:141:5036:0:0:0,-42.4452,-453.387	0/1:195:123,72:123:4372:72:2584:-174.1,0,-334.957	0/0:84:83,0:83:2948:0:0:0,-24.9855,-265.196	0/1:156:106,50:106:3796:50:1776:-113.162,0,-294.877	0/0:126:126,0:126:4512:0:0:0,-37.9298,-406.248	0/0:89:89,0:89:3148:0:0:0,-26.7917,-283.548	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.734	0/1:132:66,66:66:2344:66:2356:-172.563,0,-171.484	0/1:101:58,43:58:2076:43:1544:-108.849,0,-156.706	0/1:54:28,26:28:992:26:928:-67.5826,0,-73.3388	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.386	0/0:100:100,0:100:3563:0:0:0,-30.103,-320.879	0/1:57:23,34:23:820:34:1220:-92.9481,0,-56.9638	0/1:136:92,44:92:3296:44:1576:-101.191,0,-255.919	0/0:178:178,0:178:6348:0:0:0,-53.5833,-571.406	0/1:126:43,83:43:1544:83:2972:-229.782,0,-101.323	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:113:77,36:77:2756:36:1276:-81.1267,0,-214.266	0/1:53:39,14:39:1396:14:492:-28.6578,0,-109.985	0/1:400:278,122:278:9968:122:4372:-273.241,0,-776.64	0/0:232:231,0:231:8241:0:0:0,-69.5379,-741.344	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:239:155,84:155:5545:84:3016:-199.724,0,-425.778	0/0:178:176,1:176:6300:1:36:0,-50.0439,-563.495	0/0:144:142,2:142:5088:2:68:0,-36.8906,-451.606	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:217:102,115:102:3664:115:4115:-305.211,0,-264.639	0/1:203:130,73:130:4636:73:2600:-173.14,0,-356.296	0/1:143:77,66:77:2759:66:2372:-170.687,0,-205.504	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:121:73,48:73:2600:48:1724:-119.021,0,-196.721	0/1:63:36,27:36:1292:27:964:-68.1119,0,-97.6189	0/1:96:58,38:58:2084:38:1364:-94.1618,0,-158.931	0/1:107:58,49:58:2076:49:1764:-126.834,0,-154.9	0/1:77:32,45:32:1152:45:1612:-122.191,0,-80.8108	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18	0/0:144:144,0:144:5148:0:0:0,-43.3483,-463.462	0/1:240:165,75:165:5904:75:2680:-169.196,0,-459.223	0/0:217:216,0:216:7712:0:0:0,-65.0225,-693.757	0/1:178:124,54:124:4444:54:1920:-119.491,0,-346.547	0/1:112:66,46:66:2360:46:1656:-115.613,0,-178.943	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:80:61,19:61:2176:19:680:-37.4468,0,-172.024	0/0:79:79,0:79:2836:0:0:0,-23.7814,-254.988	0/1:21:10,11:10:352:11:392:-29.2807,0,-25.6966	0/1:87:49,38:49:1736:38:1360:-96.511,0,-130.333	0/1:27:20,7:20:720:7:244:-14.1716,0,-57.001	0/0:17:16,1:16:576:1:36:0,-1.51923,-48.5767	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.692	0/0:162:159,3:159:5696:3:104:0,-39.0641,-503.055	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:282:282,0:282:10116:0:0:0,-84.8905,-910.369	0/0:285:283,1:283:10149:1:36:0,-82.2541,-909.735	0/1:67:52,14:52:1856:14:500:-25.1086,0,-147.092	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:203:128,75:128:4592:75:2676:-179.977,0,-352.248	0/1:134:65,69:65:2332:69:2460:-181.317,0,-169.802	0/1:55:30,25:30:1076:25:884:-63.3217,0,-80.5962	0/0:97:97,0:97:3428:0:0:0,-29.1999,-308.738	0/1:158:76,82:76:2724:82:2952:-218.349,0,-197.84	0/1:16:10,6:10:360:6:212:-14.6083,0,-27.9278	0/0:100:99,1:99:3524:1:36:0,-26.5047,-313.773	0/1:45:31,14:31:1108:14:500:-31.7898,0,-86.4846	0/0:251:249,0:249:8809:0:0:0,-74.9565,-792.451	0/0:147:147,0:147:5268:0:0:0,-44.2514,-474.255	0/1:107:76,31:76:2720:31:1108:-67.8208,0,-212.833	0/0:174:174,0:174:6164:0:0:0,-52.3792,-554.867	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:132:130,0:130:4633:0:0:0,-39.1339,-416.774	0/1:101:58,43:58:2068:43:1529:-107.497,0,-155.987	0/1:164:113,51:113:4016:51:1820:-114.71,0,-312.263	0/1:125:60,65:60:2152:65:2324:-171.791,0,-156.316	0/1:83:41,42:41:1472:42:1512:-111.389,0,-107.791	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536	0/1:219:100,119:100:3584:119:4262:-317.83,0,-256.841	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:68:68,0:68:2416:0:0:0,-20.47,-217.691	0/0:77:77,0:77:2736:0:0:0,-23.1793,-246.484	0/1:76:38,38:38:1364:38:1356:-99.4622,0,-100.182	0/1:165:73,92:73:2592:92:3280:-245.751,0,-183.86	0/1:89:40,49:40:1440:49:1760:-131.892,0,-103.02	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:124:123,1:123:4389:1:36:0,-33.7294,-391.585
chr07	5716110	.	G	A	126858	PASS	AB=0.560843;ABP=150.984;AC=137;AF=0.728723;AN=188;AO=6127;CIGAR=1X;DP=8159;DPB=8159;DPRA=0;EPP=13298.9;EPPR=4413.27;GTI=2;LEN=1;MEANALT=1.01064;MQM=59.9938;MQMR=59.998;NS=94;NUMALT=1;ODDS=1.85052;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218526;QR=72134;RO=2031;RPL=2;RPP=13290.3;RPPR=4413.27;RPR=6125;RUN=1;SAF=1;SAP=13298.9;SAR=6126;SRF=0;SRP=4413.27;SRR=2031;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:25,37:25:900:37:1320:-100.438,0,-62.6572	0/1:68:21,47:21:752:47:1669:-130.025,0,-47.5362	0/1:180:78,102:78:2764:102:3649:-274.427,0,-194.815	0/1:183:79,104:79:2799:104:3709:-278.923,0,-197.063	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:137:0,137:0:0:137:4855:-437.104,-41.2411,0	0/1:116:52,64:52:1856:64:2276:-170.18,0,-132.4	1/1:62:0,62:0:0:62:2206:-198.804,-18.6639,0	0/1:74:23,51:23:811:51:1808:-140.724,0,-51.0337	1/1:58:0,58:0:0:58:2060:-185.67,-17.4597,0	1/1:89:0,89:0:0:89:3185:-286.872,-26.7917,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	0/1:44:21,23:21:737:23:828:-61.5988,0,-53.4053	0/1:83:47,36:47:1673:36:1292:-91.5983,0,-125.87	0/1:63:29,34:29:1027:34:1211:-90.3306,0,-73.7773	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	0/1:41:23,18:23:824:18:637:-45.315,0,-62.1411	0/1:133:53,80:53:1872:80:2865:-218.049,0,-128.719	1/1:131:0,131:0:0:131:4642:-417.942,-39.4349,0	0/1:166:93,73:93:3310:73:2609:-185.087,0,-248.148	1/1:129:0,129:0:0:129:4620:-415.963,-38.8329,0	0/1:78:29,49:29:1031:49:1752:-134.484,0,-69.6223	0/1:64:26,38:26:928:38:1359:-103.344,0,-64.5723	0/1:137:58,79:58:2060:79:2828:-213.516,0,-144.428	1/1:199:1,198:1:36:198:7048:-630.783,-56.3067,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:242:94,148:94:3314:148:5308:-405.004,0,-225.627	1/1:130:1,129:1:32:129:4587:-409.739,-35.9346,0	1/1:90:3,87:3:108:87:3098:-268.97,-17.0175,0	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:15:5,10:5:176:10:360:-28.2289,0,-11.6696	0/1:20:12,8:12:428:8:284:-19.8828,0,-32.8382	0/1:200:112,88:112:3970:88:3103:-219.29,0,-297.285	0/1:123:44,79:44:1568:79:2817:-216.742,0,-104.385	0/1:52:26,26:26:928:26:926:-68.0042,0,-68.1847	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:110:39,71:39:1388:71:2517:-193.666,0,-92.1056	0/1:54:35,19:35:1232:19:667:-44.099,0,-94.9257	0/1:136:58,78:58:2076:78:2779:-209.41,0,-146.17	0/1:67:31,36:31:1060:36:1277:-95.0621,0,-75.5322	0/1:53:30,23:30:1044:23:819:-58.077,0,-78.3123	1/1:109:0,109:0:0:109:3890:-350.294,-32.8123,0	1/1:128:1,127:1:36:127:4512:-402.651,-34.9336,0	0/1:142:63,79:63:2252:79:2840:-213.091,0,-160.197	1/1:146:1,145:1:21:145:5190:-465.138,-41.8504,0	0/1:104:34,70:34:1215:70:2497:-193.675,0,-78.3486	0/1:99:25,74:25:892:74:2619:-206.154,0,-50.7977	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:134:53,81:53:1900:81:2904:-221.257,0,-130.94	1/1:98:1,97:1:36:97:3479:-309.722,-25.9027,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	0/1:73:30,43:30:1072:43:1527:-115.747,0,-74.8173	0/1:51:33,18:33:1188:18:644:-42.9381,0,-91.8761	0/1:21:6,15:6:216:15:527:-41.4386,0,-13.4689	1/1:24:0,24:0:0:24:836:-75.5547,-7.22472,0	1/1:94:0,94:0:0:94:3344:-301.176,-28.2968,0	1/1:97:0,97:0:0:97:3467:-312.242,-29.1999,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:138:0,138:0:0:138:4952:-445.828,-41.5421,0	1/1:149:1,147:1:36:147:5263:-470.284,-41.2415,0	0/1:74:25,49:25:900:49:1755:-135.957,0,-59.0448	1/1:89:0,89:0:0:89:3191:-287.412,-26.7917,0	0/1:122:48,74:48:1724:74:2643:-201.391,0,-118.72	0/1:140:70,70:70:2458:70:2508:-183.828,0,-179.329	0/1:53:25,28:25:900:28:980:-72.5556,0,-65.3664	1/1:79:0,79:0:0:79:2815:-253.59,-23.7814,0	0/1:57:33,24:33:1160:24:837:-58.4864,0,-87.5452	0/1:23:6,17:6:216:17:608:-48.1283,0,-12.8668	1/1:161:0,161:0:0:161:5730:-515.817,-48.4658,0	0/1:84:31,53:31:1103:53:1882:-144.37,0,-74.2933	1/1:121:0,121:0:0:121:4327:-389.606,-36.4246,0	1/1:152:0,152:0:0:152:5435:-489.279,-45.7566,0	0/1:75:26,49:26:919:49:1752:-135.387,0,-60.4489	1/1:109:0,109:0:0:109:3899:-351.103,-32.8123,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:107:0,107:0:0:107:3827:-344.626,-32.2102,0	0/1:101:40,61:40:1406:61:2184:-166.422,0,-96.4291	0/1:138:43,95:43:1544:95:3381:-262.964,0,-97.7109	0/1:56:31,25:31:1107:25:892:-63.742,0,-83.0825	0/1:89:36,53:36:1283:53:1895:-144.036,0,-88.981	1/1:38:0,38:0:0:38:1322:-119.276,-11.4391,0	0/1:127:60,67:60:2106:67:2374:-175.685,0,-151.575	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	1/1:85:0,85:0:0:85:3017:-271.761,-25.5876,0	0/1:61:35,26:35:1256:26:927:-65.3845,0,-94.9825	0/1:130:64,66:64:2300:66:2357:-173.253,0,-168.127	0/1:77:59,18:59:2076:18:644:-35.1113,0,-163.929	1/1:65:0,65:0:0:65:2310:-208.16,-19.567,0	1/1:103:0,103:0:0:103:3668:-330.323,-31.0061,0
chr07	5716135	.	T	G	31981.1	PASS	AB=0.436474;ABP=165.234;AC=51;AF=0.271277;AN=188;AO=2028;CIGAR=1X;DP=8236;DPB=8236;DPRA=1.17362;EPP=4406.76;EPPR=13474.8;GTI=2;LEN=1;MEANALT=1;MQM=59.9975;MQMR=59.9929;NS=94;NUMALT=1;ODDS=2.44529;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72261;QR=222267;RO=6208;RPL=2028;RPP=4406.76;RPPR=13483.5;RPR=0;RUN=1;SAF=0;SAP=4406.76;SAR=2028;SRF=1;SRP=13474.8;SRR=6207;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:37,24:37:1328:24:864:-59.7197,0,-101.459	0/1:69:47,22:47:1673:22:779:-49.6616,0,-130.084	0/1:183:105,78:105:3757:78:2783:-195.622,0,-283.24	0/1:184:104,80:104:3712:80:2861:-202.338,0,-278.89	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:40:40,0:40:1405:0:0:0,-12.0412,-126.745	0/0:141:141,0:141:5036:0:0:0,-42.4452,-453.385	0/1:117:63,54:63:2260:54:1916:-137.497,0,-168.442	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:74:51,23:51:1815:23:824:-52.2071,0,-141.354	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:44:24,20:24:856:20:711:-51.0703,0,-64.1158	0/1:84:37,47:37:1316:47:1679:-126.11,0,-93.4553	0/1:63:34,29:34:1224:29:1044:-75.3099,0,-91.5022	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:40:17,23:17:612:23:823:-62.352,0,-43.3722	0/1:133:80,53:80:2860:53:1891:-130.431,0,-217.601	0/0:136:136,0:136:4860:0:0:0,-40.9401,-437.554	0/1:165:72,93:72:2580:93:3302:-247.728,0,-182.779	0/0:128:128,0:128:4604:0:0:0,-38.5318,-414.522	0/1:76:47,29:47:1680:29:1024:-69.5943,0,-128.609	0/1:64:38,26:38:1364:26:928:-64.5723,0,-103.795	0/1:136:79,57:79:2832:57:2039:-142.841,0,-214.175	0/0:201:201,0:201:7208:0:0:0,-60.507,-648.773	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:243:149,94:149:5336:94:3349:-228.476,0,-407.223	0/0:131:130,1:130:4633:1:21:0,-37.335,-414.664	0/0:90:88,2:88:3148:2:72:0,-20.256,-276.709	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:15:10,5:10:360:5:171:-11.21,0,-28.2289	0/1:20:8,12:8:288:12:426:-32.6568,0,-20.2468	0/1:206:92,114:92:3285:114:4070:-304.474,0,-233.856	0/1:128:82,46:82:2937:46:1648:-110.077,0,-226.03	0/1:52:25,27:25:900:27:968:-71.7838,0,-65.6675	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:111:72,39:72:2588:39:1392:-92.1647,0,-199.754	0/1:54:20,34:20:720:34:1203:-92.3194,0,-48.8732	0/1:135:77,58:77:2756:58:2072:-146.112,0,-207.643	0/1:67:36,31:36:1288:31:1108:-79.862,0,-96.0546	0/1:52:23,29:23:828:29:1031:-77.4491,0,-59.1906	0/0:113:113,0:113:4021:0:0:0,-34.0164,-362.079	0/0:130:129,1:129:4632:1:36:0,-35.5356,-413.443	0/1:142:81,61:81:2904:61:2168:-152.64,0,-218.849	0/0:147:146,1:146:5232:1:36:0,-40.6531,-467.419	0/1:102:69,33:69:2472:33:1180:-75.803,0,-192.029	0/1:103:77,26:77:2764:26:919:-52.0193,0,-217.995	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:135:82,53:82:2921:53:1881:-128.929,0,-222.485	0/0:99:98,1:98:3512:1:36:0,-26.2037,-312.692	0/0:12:11,1:11:392:1:36:0,-0.0140849,-32.0218	0/1:75:45,30:45:1612:30:1080:-74.936,0,-122.791	0/1:50:17,33:17:612:33:1175:-91.0055,0,-40.3619	0/1:21:15,6:15:528:6:216:-13.4689,0,-41.5297	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/0:99:99,0:99:3533:0:0:0,-29.802,-318.178	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:144:144,0:144:5164:0:0:0,-43.3483,-464.9	0/0:150:149,1:149:5348:1:36:0,-41.5588,-477.855	0/1:75:50,25:50:1800:25:896:-58.3831,0,-139.705	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/1:124:74,50:74:2656:50:1768:-122.076,0,-201.958	0/1:141:71,70:71:2552:70:2504:-183.167,0,-187.485	0/1:52:28,24:28:1004:24:852:-61.3468,0,-75.0223	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:56:25,31:25:900:31:1103:-82.7221,0,-64.4633	0/1:26:19,7:19:665:7:248:-14.8374,0,-52.346	0/0:160:160,0:160:5748:0:0:0,-48.1648,-517.433	0/1:88:56,32:56:2008:32:1131:-75.6071,0,-154.503	0/0:123:123,0:123:4412:0:0:0,-37.0267,-397.251	0/0:153:153,0:153:5484:0:0:0,-46.0576,-493.686	0/1:75:49,26:49:1764:26:932:-61.6216,0,-136.467	0/0:112:112,0:112:3997:0:0:0,-33.7154,-359.919	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:108:108,0:108:3860:0:0:0,-32.5112,-347.596	0/1:101:63,38:63:2233:38:1346:-91.0353,0,-170.829	0/1:139:96,43:96:3418:43:1532:-96.3299,0,-265.989	0/1:56:26,30:26:936:30:1067:-79.4835,0,-67.7018	0/1:90:53,37:53:1896:37:1328:-92.7295,0,-143.825	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:130:70,60:70:2503:60:2131:-152.923,0,-186.388	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:60:25,35:25:892:35:1256:-95.2835,0,-62.5379	0/1:129:65,64:65:2313:64:2296:-168.068,0,-169.596	0/1:75:18,57:18:648:57:2001:-157.785,0,-36.0746	0/0:65:65,0:65:2306:0:0:0,-19.5669,-207.798	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.361
chr07	5721898	.	G	A	99649.8	PASS	AB=0.513394;ABP=9.00176;AC=133;AF=0.707447;AN=188;AO=4875;CIGAR=1X;DP=6760;DPB=6760;DPRA=55.6813;EPP=10588.9;EPPR=4096.24;GTI=1;LEN=1;MEANALT=1;MQM=59.9832;MQMR=59.9729;NS=94;NUMALT=1;ODDS=0.405689;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173506;QR=67304;RO=1885;RPL=0;RPP=10588.9;RPPR=4096.24;RPR=4875;RUN=1;SAF=4875;SAP=10588.9;SAR=0;SRF=1885;SRP=4096.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:15,26:15:540:26:928:-71.496,0,-36.5943	0/1:24:10,14:10:360:14:489:-37.1142,0,-25.5196	0/1:294:132,162:132:4680:162:5759:-429.922,0,-332.855	0/1:163:77,86:77:2756:86:3061:-226.651,0,-199.212	1/1:67:0,67:0:0:67:2378:-214.275,-20.169,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:47:2,45:2:72:45:1583:-135.919,-7.31169,0	0/1:86:40,46:40:1421:46:1614:-119.655,0,-102.297	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0	0/1:65:36,29:36:1269:29:1028:-73.2661,0,-94.9438	1/1:59:0,59:0:0:59:2113:-190.434,-17.7608,0	1/1:105:0,105:0:0:105:3768:-339.315,-31.6082,0	1/1:105:0,105:0:0:105:3772:-339.678,-31.6082,0	0/1:77:37,40:37:1309:40:1428:-105.638,0,-94.9302	0/1:62:21,41:21:756:41:1468:-113.752,0,-49.7034	0/1:89:41,48:41:1472:48:1690:-125.591,0,-105.984	1/1:35:0,35:0:0:35:1252:-112.971,-10.5361,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:49:33,16:33:1188:16:546:-34.7088,0,-92.4781	0/1:54:25,29:25:896:29:1044:-78.0192,0,-64.7047	1/1:64:0,64:0:0:64:2266:-204.199,-19.2659,0	0/1:31:20,11:20:697:11:392:-26.2881,0,-53.7187	1/1:92:0,92:0:0:92:3236:-291.459,-27.6948,0	0/1:31:8,23:8:288:23:824:-65.1514,0,-16.9355	0/1:53:26,27:26:928:27:968:-71.4828,0,-67.8837	0/1:145:67,78:67:2378:78:2770:-205.888,0,-170.596	1/1:132:0,132:0:0:132:4705:-423.61,-39.736,0	1/1:52:0,52:0:0:52:1838:-165.697,-15.6536,0	0/1:119:42,77:42:1463:77:2719:-209.127,0,-96.1358	1/1:128:3,125:3:108:125:4403:-386.365,-28.4567,0	1/1:44:1,43:1:36:43:1533:-134.663,-9.64705,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:200:107,93:107:3829:93:3304:-237.37,0,-284.599	0/1:69:33,36:33:1184:36:1273:-94.0999,0,-86.0972	0/1:60:30,30:30:1072:30:1080:-79.4515,0,-78.7307	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:92:39,53:39:1404:53:1887:-142.414,0,-98.9645	0/1:44:29,15:29:1036:15:540:-35.6912,0,-80.3086	0/1:121:64,57:64:2285:57:2021:-145.737,0,-169.485	0/1:69:34,35:34:1224:35:1260:-92.9344,0,-89.696	0/1:40:17,23:17:612:23:824:-62.4421,0,-43.3722	1/1:91:0,91:0:0:91:3238:-291.639,-27.3937,0	1/1:139:0,139:0:0:139:4958:-446.367,-41.8432,0	0/1:112:43,69:43:1525:69:2450:-187.036,0,-103.826	1/1:48:0,48:0:0:48:1691:-152.473,-14.4494,0	0/1:111:33,78:33:1180:78:2778:-216.844,0,-73.0937	0/1:59:23,36:23:824:36:1258:-95.7575,0,-56.7225	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:103:41,62:41:1468:62:2211:-168.247,0,-101.41	1/1:54:0,54:0:0:54:1917:-172.782,-16.2556,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:81:35,46:35:1245:46:1641:-123.589,0,-87.9693	0/1:33:9,24:9:324:24:849:-66.7938,0,-19.5719	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:9:0,9:0:0:9:294:-26.7756,-2.70927,0	1/1:66:0,66:0:0:66:2316:-208.689,-19.868,0	1/1:127:2,125:2:72:125:4473:-395.901,-31.3941,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:105:0,105:0:0:105:3763:-338.869,-31.6082,0	1/1:127:0,127:0:0:127:4541:-408.855,-38.2308,0	0/1:30:23,7:23:809:7:233:-12.2634,0,-64.0974	1/1:51:0,51:0:0:51:1809:-163.09,-15.3525,0	0/1:122:51,71:51:1832:71:2526:-190.864,0,-128.435	0/1:83:64,19:64:2281:19:684:-36.9048,0,-180.565	0/1:41:29,12:29:1040:12:417:-25.518,0,-81.5721	1/1:33:0,33:0:0:33:1187:-107.139,-9.93399,0	0/1:64:42,22:42:1508:22:792:-52.3398,0,-116.749	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:113:0,113:0:0:113:4052:-364.867,-34.0164,0	0/1:79:53,26:53:1904:26:936:-60.7781,0,-147.856	1/1:106:0,106:0:0:106:3762:-338.779,-31.9092,0	1/1:91:0,91:0:0:91:3242:-291.999,-27.3937,0	0/1:84:49,35:49:1749:35:1218:-84.6328,0,-132.406	1/1:104:1,103:1:36:103:3595:-320.153,-27.7088,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:104:0,104:0:0:104:3684:-331.759,-31.3071,0	0/1:68:26,42:26:921:42:1512:-115.905,0,-62.7352	0/1:107:44,63:44:1557:63:2245:-170.102,0,-108.209	0/1:80:41,39:41:1476:39:1389:-101.225,0,-109.054	0/1:81:39,42:39:1404:42:1493:-110.279,0,-102.276	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:151:74,77:74:2643:77:2764:-203.546,0,-192.661	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:76:1,75:1:36:75:2696:-239.286,-19.28,0	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	0/1:40:25,15:25:896:15:540:-36.8953,0,-68.9192	0/1:131:73,58:73:2611:58:2076:-147.676,0,-195.025	0/1:73:51,22:51:1836:22:784:-48.9087,0,-143.545	1/1:157:0,157:0:0:157:5599:-504.029,-47.2617,0	1/1:96:0,96:0:0:96:3437:-309.542,-28.8989,0
chr07	5721946	.	A	C	29646.4	PASS	AB=0.487435;ABP=8.24912;AC=55;AF=0.292553;AN=188;AO=1875;CIGAR=1X;DP=6701;DPB=6701;DPRA=1.18468;EPP=4074.52;EPPR=10456.5;GTI=1;LEN=1;MEANALT=1;MQM=59.9707;MQMR=59.9927;NS=94;NUMALT=1;ODDS=0.640162;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65576;QR=171990;RO=4822;RPL=1874;RPP=4065.84;RPPR=10447.8;RPR=1;RUN=1;SAF=1874;SAP=4065.84;SAR=1;SRF=4819;SRP=10447.8;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:26,16:26:924:16:561:-38.1739,0,-70.8344	0/1:24:14,10:14:504:10:345:-24.1561,0,-38.4734	0/1:287:157,130:157:5608:130:4598:-327.591,0,-418.448	0/1:162:88,74:88:3134:74:2592:-184.759,0,-233.519	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:46:44,2:44:1571:2:72:0,-7.01066,-134.844	0/1:90:49,41:49:1756:41:1405:-99.6478,0,-131.231	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/1:67:31,36:31:1104:36:1274:-94.793,0,-79.5016	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:105:104,1:104:3702:1:32:0,-28.4088,-330.183	0/0:105:105,0:105:3736:0:0:0,-31.6081,-336.44	0/1:76:41,35:41:1459:35:1218:-87.0436,0,-108.727	0/1:65:43,22:43:1527:22:770:-50.0524,0,-118.155	0/1:92:50,42:50:1784:42:1445:-102.645,0,-133.148	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.683	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:49:16,33:16:568:33:1154:-89.4143,0,-36.7014	0/1:53:29,24:29:1036:24:852:-61.0458,0,-77.5993	0/0:63:60,0:60:2137:0:0:0,-18.0618,-192.237	0/1:31:11,20:11:396:20:711:-54.9837,0,-26.6508	0/0:94:94,0:94:3351:0:0:0,-28.2968,-301.807	0/1:30:22,8:22:784:8:288:-17.2365,0,-61.853	0/1:52:26,26:26:936:26:936:-68.9059,0,-68.9059	0/1:139:75,64:75:2696:64:2252:-161.099,0,-201.041	0/0:131:131,0:131:4687:0:0:0,-39.4349,-421.99	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:118:75,43:75:2680:43:1506:-100.307,0,-205.924	0/0:127:124,3:124:4428:3:108:0,-28.1556,-388.618	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:197:93,104:93:3306:104:3602:-265.088,0,-238.456	0/1:68:35,33:35:1244:33:1132:-81.7101,0,-91.7946	0/1:60:30,30:30:1051:30:1046:-76.3866,0,-76.8378	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:92:53,39:53:1895:39:1334:-92.6579,0,-143.133	0/1:45:14,31:14:495:31:1085:-84.4106,0,-31.3367	0/1:120:57,63:57:2023:63:2202:-162.319,0,-146.219	0/1:69:36,33:36:1292:33:1095:-78.0742,0,-95.8127	0/1:41:24,17:24:860:17:604:-42.3484,0,-65.3796	0/0:90:90,0:90:3214:0:0:0,-27.0927,-289.482	0/0:137:137,0:137:4912:0:0:0,-41.2411,-442.23	0/1:114:69,45:69:2472:45:1608:-110.693,0,-188.416	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:111:77,34:77:2756:34:1176:-72.7271,0,-214.868	0/1:59:35,24:35:1256:24:838:-57.9748,0,-95.5845	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:104:64,40:64:2288:40:1409:-95.7946,0,-174.875	0/0:50:50,0:50:1763:0:0:0,-15.0515,-158.897	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:82:46,36:46:1631:36:1265:-89.4659,0,-122.389	0/1:36:26,10:26:920:10:341:-20.1807,0,-72.28	0/1:11:8,3:8:288:3:99:-5.92525,0,-22.9561	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:126:124,2:124:4435:2:63:0,-31.9466,-393.338	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:106:106,0:106:3775:0:0:0,-31.9092,-339.947	0/0:126:125,0:125:4467:0:0:0,-37.6287,-401.84	0/1:30:7,23:7:252:23:828:-65.8132,0,-13.9981	0/0:52:52,0:52:1839:0:0:0,-15.6536,-165.79	0/1:120:68,52:68:2404:52:1796:-125.792,0,-180.492	0/1:83:18,65:18:635:65:2263:-178.944,0,-32.4915	0/1:39:11,28:11:392:28:983:-77.0424,0,-23.8799	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:64:23,41:23:828:41:1459:-112.339,0,-55.5782	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.03	0/1:80:26,54:26:928:54:1898:-147.012,0,-59.7559	0/0:104:104,0:104:3718:0:0:0,-31.3071,-334.82	0/0:90:90,0:90:3223:0:0:0,-27.0927,-290.291	0/1:83:35,48:35:1252:48:1677:-126.228,0,-87.9996	0/0:101:100,1:100:3563:1:36:0,-26.8058,-317.28	0/0:3:3,0:3:96:0:0:0,-0.90309,-8.95808	0/0:105:105,0:105:3743:0:0:0,-31.6081,-337.071	0/1:66:40,26:40:1423:26:919:-63.1582,0,-108.499	0/1:104:59,45:59:2099:45:1580:-111.181,0,-157.872	0/1:74:37,37:37:1332:37:1311:-96.0147,0,-97.9062	0/1:79:41,38:41:1446:38:1344:-97.4788,0,-106.653	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:149:75,74:75:2673:74:2511:-181.387,0,-195.96	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:72:72,0:72:2554:0:0:0,-21.6742,-230.11	0/0:80:80,0:80:2847:0:0:0,-24.0824,-256.468	0/1:41:14,27:14:491:27:956:-74.0135,0,-32.1789	0/1:129:57,72:57:2016:72:2514:-187.619,0,-142.878	0/1:72:22,50:22:775:50:1763:-137.279,0,-48.397	0/0:160:160,0:160:5703:0:0:0,-48.1648,-513.39	0/0:94:94,0:94:3309:0:0:0,-28.2968,-298.028
chr07	5723135	.	A	G	272660	PASS	AB=0.48377;ABP=22.8164;AC=133;AF=0.715054;AN=186;AO=10620;CIGAR=1X;DP=15111;DPB=15111;DPRA=164.239;EPP=23046.7;EPPR=9720.36;GTI=1;LEN=1;MEANALT=1.07609;MQM=59.9615;MQMR=59.9942;NS=93;NUMALT=1;ODDS=0.619069;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=374363;QR=159737;RO=4483;RPL=7045;RPP=2465.01;RPPR=827.92;RPR=3575;RUN=1;SAF=7047;SAP=2470.69;SAR=3573;SRF=2896;SRP=832.985;SRR=1587;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:31,47:31:1112:47:1663:-126.476,0,-76.911	0/1:330:205,125:205:7282:125:4435:-299.983,0,-556.096	0/1:216:112,102:112:4012:102:3557:-255.562,0,-296.48	0/1:210:98,111:98:3507:111:3922:-289.898,0,-252.56	1/1:121:0,121:0:0:121:4261:-383.671,-36.4246,0	1/1:97:0,97:0:0:97:3439:-309.725,-29.1999,0	1/1:247:0,247:0:0:247:8735:-786.152,-74.3544,0	0/1:232:122,110:122:4365:110:3864:-278.119,0,-323.184	1/1:170:0,170:0:0:170:5911:-532.108,-51.1751,0	0/1:137:87,50:87:3078:50:1750:-116.494,0,-236.006	1/1:141:0,141:0:0:141:5022:-452.128,-42.4452,0	1/1:231:0,231:0:0:231:8188:-736.929,-69.5379,0	1/1:195:0,195:0:0:195:6866:-618.014,-58.7009,0	0/1:179:105,74:105:3742:74:2639:-183.872,0,-283.096	0/1:176:91,85:91:3230:85:2997:-216.979,0,-237.941	0/1:164:86,78:86:3047:78:2750:-198.372,0,-225.09	1/1:186:0,186:0:0:186:6578:-592.077,-55.9916,0	1/1:156:0,156:0:0:156:5441:-489.826,-46.9607,0	0/1:117:61,56:61:2179:56:1987:-143.883,0,-161.155	0/1:195:82,113:82:2921:113:3993:-300.86,0,-204.423	1/1:230:0,230:0:0:230:8062:-725.61,-69.2369,0	0/1:60:38,22:38:1364:22:771:-51.6485,0,-104.999	1/1:138:0,138:0:0:138:4865:-438.006,-41.5421,0	0/1:212:88,124:88:3132:124:4342:-327.142,0,-218.289	0/1:175:70,104:70:2488:104:3642:-275.249,0,-171.432	0/1:357:198,159:198:7043:159:5622:-398.638,0,-526.467	1/1:358:1,357:1:36:357:12624:-1132.4,-104.17,0	1/1:106:0,106:0:0:106:3763:-338.095,-31.9092,0	0/1:266:131,135:131:4673:135:4781:-350.375,0,-340.657	1/1:157:6,151:6:216:151:5284:-455.906,-27.4712,0	1/1:169:2,167:2:72:167:5906:-524.811,-44.0373,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:8:6,2:6:208:2:72:-4.42848,0,-16.6508	0/1:498:243,255:243:8607:255:8937:-654.41,0,-624.718	0/1:166:91,75:91:3245:75:2696:-192.913,0,-242.299	0/1:172:92,80:92:3270:80:2793:-199.726,0,-242.744	.:.:.:.:.:.:.:.	0/1:193:96,97:96:3358:97:3416:-249.555,0,-244.338	0/1:114:49,65:49:1756:65:2287:-171.775,0,-124.007	0/1:140:73,67:73:2594:67:2354:-169.975,0,-191.564	0/1:211:105,106:105:3748:106:3741:-273.376,0,-274.004	0/1:168:85,83:85:3024:83:2878:-208.68,0,-221.816	1/1:154:1,153:1:36:153:5404:-482.898,-42.7603,0	1/1:131:0,131:0:0:131:4645:-418.217,-39.4349,0	0/1:188:91,97:91:3256:97:3425:-251.872,0,-236.667	1/1:201:1,200:1:36:200:7030:-629.173,-56.9088,0	0/1:181:99,82:99:3533:82:2891:-205.939,0,-263.692	0/1:261:130,131:130:4667:131:4605:-336.052,0,-341.62	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:217:136,80:136:4872:80:2770:-184.161,0,-373.25	1/1:106:0,106:0:0:106:3758:-338.421,-31.9092,0	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:202:102,100:102:3664:100:3541:-258.092,0,-269.154	0/1:103:49,54:49:1760:54:1881:-138.552,0,-127.678	0/1:15:4,11:4:144:11:384:-30.3792,0,-8.79817	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:181:0,181:0:0:181:6363:-572.77,-54.4864,0	1/1:202:0,202:0:0:202:7087:-637.87,-60.8081,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	1/1:145:0,145:0:0:145:5084:-457.623,-43.6494,0	1/1:289:5,284:5:172:284:10082:-891.504,-71.1797,0	0/1:114:61,53:61:2184:53:1850:-132.461,0,-162.509	1/1:92:1,91:1:36:91:3202:-284.805,-24.0965,0	0/1:225:110,115:110:3944:115:4073:-299.025,0,-287.42	0/1:175:118,57:118:4198:57:2021:-129.481,0,-325.322	0/1:74:30,44:30:1063:44:1552:-117.696,0,-73.7046	1/1:132:0,132:0:0:132:4552:-409.854,-39.736,0	0/1:207:101,106:101:3605:106:3748:-275.209,0,-262.341	0/1:58:21,37:21:752:37:1291:-99.0304,0,-50.5465	1/1:114:1,113:1:36:113:3970:-353.898,-30.7191,0	0/1:151:82,69:82:2922:69:2440:-173.461,0,-217.751	1/1:349:0,349:0:0:349:12341:-1110.36,-105.059,0	1/1:165:0,165:0:0:165:5770:-519.427,-49.67,0	0/1:92:48,44:48:1711:44:1563:-113.266,0,-126.58	1/1:165:2,163:2:72:163:5785:-513.931,-42.8332,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:138:0,138:0:0:138:4866:-438.089,-41.5421,0	0/1:121:59,62:59:2077:62:2220:-163.64,0,-150.772	0/1:249:122,127:122:4373:127:4452:-325.893,0,-318.785	0/1:238:119,119:119:4213:119:4232:-309.415,0,-307.709	0/1:176:98,77:98:3487:77:2727:-192.634,0,-261.002	1/1:218:0,217:0:0:217:7691:-691.87,-65.3235,0	0/1:349:159,190:159:5672:190:6713:-499.187,0,-405.54	1/1:121:0,121:0:0:121:4265:-384.028,-36.4246,0	1/1:204:0,204:0:0:204:7223:-650.131,-61.4101,0	1/1:182:0,182:0:0:182:6430:-578.748,-54.7875,0	0/1:118:71,47:71:2515:47:1659:-114.075,0,-191.078	0/1:153:69,83:69:2453:83:2947:-219.349,0,-174.907	0/1:189:129,60:129:4619:60:2122:-134.353,0,-358.978	1/1:128:0,128:0:0:128:4472:-402.655,-38.5318,0	1/1:287:0,287:0:0:287:10084:-907.506,-86.3956,0
chr07	5763130	.	T	C	121023	PASS	AB=0.512617;ABP=13.6406;AC=134;AF=0.712766;AN=188;AO=8873;CIGAR=1X;DP=12641;DPB=12641;DPRA=27.1742;EPP=19270.5;EPPR=8178.6;GTI=2;LEN=1;MEANALT=1.02151;MQM=29.1077;MQMR=38.8175;NS=94;NUMALT=1;ODDS=0.158218;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317136;QR=132185;RO=3765;RPL=0;RPP=19270.5;RPPR=8178.6;RPR=8873;RUN=1;SAF=0;SAP=19270.5;SAR=8873;SRF=0;SRP=8178.6;SRR=3765;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:29,25:29:1024:25:887:-44.88,0,-71.3406	0/1:224:90,134:90:3152:134:4804:-261.197,0,-198.425	0/1:233:118,115:118:4140:115:4124:-212.397,0,-281.859	0/1:293:126,167:126:4402:167:5969:-335.812,0,-287.153	1/1:149:1,148:1:32:148:5299:-381.566,-41.7173,0	1/1:50:0,50:0:0:50:1796:-123.086,-15.0515,0	1/1:107:0,107:0:0:107:3848:-271.745,-32.2102,0	0/1:291:156,135:156:5431:135:4804:-242.062,0,-371.951	1/1:92:0,91:0:0:91:3260:-223.734,-27.3937,0	0/1:148:72,76:72:2479:76:2710:-148.688,0,-167.167	1/1:40:0,40:0:0:40:1440:-102.433,-12.0412,0	1/1:77:0,77:0:0:77:2734:-187.855,-23.1793,0	1/1:44:0,44:0:0:44:1572:-108.587,-13.2453,0	0/1:59:29,30:29:1020:30:1080:-60.9532,0,-70.5228	0/1:58:36,22:36:1253:22:788:-38.7504,0,-90.7958	0/1:38:19,19:19:665:19:663:-37.6822,0,-46.4589	1/1:86:0,86:0:0:86:3067:-211.267,-25.8886,0	1/1:52:0,52:0:0:52:1849:-126.762,-15.6536,0	0/1:13:8,5:8:284:5:180:-8.67314,0,-19.369	0/1:278:120,158:120:4182:158:5652:-316.575,0,-275.275	1/1:163:0,163:0:0:163:5814:-424.031,-49.0679,0	0/1:248:160,88:160:5569:88:3164:-157.222,0,-408.703	1/1:126:0,126:0:0:126:4499:-319.51,-37.9298,0	0/1:167:73,94:73:2571:94:3363:-193.68,0,-171.699	0/1:123:65,58:65:2276:58:2071:-113.513,0,-158.434	0/1:554:269,285:269:9484:285:10224:-576.226,0,-647.644	1/1:268:0,268:0:0:268:9520:-692.176,-80.676,0	1/1:33:0,33:0:0:33:1184:-86.0977,-9.93399,0	0/1:386:178,208:178:6286:208:7449:-425.083,0,-422.669	1/1:275:3,272:3:108:272:9748:-697.479,-73.1107,0	1/1:156:0,156:0:0:156:5572:-394.787,-46.9607,0	0/1:4:1,3:1:36:3:108:-6.92362,0,-2.25037	1/1:16:0,16:0:0:16:557:-40.7324,-4.81648,0	1/1:2:0,2:0:0:2:72:-5.19878,-0.60206,0	0/1:3:1,2:1:36:2:72:-4.29569,0,-2.48451	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.583	0/1:169:82,87:82:2897:87:3109:-175.576,0,-198.208	0/1:451:199,252:199:6965:252:9000:-515.72,0,-461.981	0/1:32:17,15:17:600:15:527:-27.2428,0,-41.1718	0/1:6:5,1:5:180:1:36:-1.09658,0,-14.0845	0/1:221:114,107:114:4013:107:3844:-212.141,0,-280.124	0/1:17:9,8:9:320:8:288:-16.0727,0,-22.8583	0/1:241:119,122:119:4204:122:4371:-244.736,0,-286.2	0/1:79:45,34:45:1592:34:1216:-62.4131,0,-112.176	0/1:69:31,38:31:1104:38:1368:-76.2027,0,-74.3106	1/1:106:0,106:0:0:106:3775:-275.912,-31.9092,0	1/1:273:0,273:0:0:273:9708:-665.402,-82.1812,0	0/1:306:131,175:131:4582:175:6230:-351.088,0,-302.45	1/1:154:0,154:0:0:154:5515:-391.094,-46.3586,0	0/1:291:148,143:148:5156:143:5120:-275.499,0,-355.72	0/1:143:77,66:77:2697:66:2368:-129.045,0,-189.663	1/1:10:0,10:0:0:10:360:-25.6718,-3.0103,0	0/1:206:92,114:92:3186:114:4096:-216.248,0,-207.388	1/1:50:0,50:0:0:50:1792:-130.402,-15.0515,0	0/1:17:12,5:12:405:5:180:-7.30572,0,-29.6928	0/1:189:76,113:76:2664:113:4045:-235.69,0,-173.174	0/1:34:18,16:18:636:16:576:-30.6707,0,-44.5108	0/1:6:4,2:4:140:2:72:-3.70907,0,-10.681	1/1:23:0,23:0:0:23:828:-60.3775,-6.92369,0	1/1:66:0,66:0:0:66:2360:-171.306,-19.868,0	1/1:85:0,85:0:0:85:3048:-215.796,-25.5876,0	0/1:8:2,6:2:68:6:216:-12.8579,0,-3.80917	1/1:447:1,446:1:36:446:15925:-1153.6,-131.106,0	1/1:328:4,324:4:140:324:11590:-808.896,-86.3504,0	0/1:122:69,53:69:2429:53:1889:-101.153,0,-171.254	1/1:113:1,112:1:32:112:3974:-278.762,-30.8954,0	0/1:281:117,164:117:4105:164:5883:-331.478,0,-264.311	0/1:128:87,41:87:3044:41:1468:-65.4357,0,-223.32	0/1:10:4,6:4:140:6:216:-12.9549,0,-9.47685	1/1:90:0,90:0:0:90:3232:-222.147,-27.0927,0	0/1:72:31,41:31:1100:41:1463:-84.889,0,-73.3261	0/1:22:17,5:17:608:5:180:-6.35431,0,-45.9107	1/1:111:0,111:0:0:111:3953:-271.84,-33.4143,0	0/1:75:44,31:44:1548:31:1107:-53.2013,0,-109.165	1/1:159:0,159:0:0:159:5708:-413.803,-47.8638,0	1/1:236:0,236:0:0:236:8439:-597.542,-71.0431,0	0/1:354:156,198:156:5524:198:7079:-378.971,0,-359.863	1/1:186:1,185:1:36:185:6635:-451.239,-52.604,0	1/1:20:0,20:0:0:20:720:-49.204,-6.0206,0	1/1:173:0,173:0:0:173:6204:-450.335,-52.0782,0	0/1:241:105,136:105:3723:136:4839:-260.572,0,-242.651	0/1:344:157,187:157:5508:187:6699:-370.963,0,-367.961	0/1:71:45,26:45:1608:26:920:-44.6442,0,-115.98	0/1:73:46,27:46:1640:27:959:-46.4701,0,-116.639	1/1:93:0,93:0:0:93:3275:-233.79,-27.9958,0	0/1:140:76,64:76:2700:64:2269:-119.374,0,-188.014	1/1:51:0,51:0:0:51:1816:-124.934,-15.3525,0	1/1:60:0,60:0:0:60:2148:-146.125,-18.0618,0	1/1:59:0,59:0:0:59:2073:-144.131,-17.7608,0	0/1:17:7,10:7:244:10:356:-21.4522,0,-15.4002	0/1:35:22,13:22:780:13:464:-23.8834,0,-56.9688	0/1:44:33,11:33:1149:11:396:-14.9655,0,-85.1249	1/1:239:1,236:1:36:236:8450:-594.854,-68.2359,0	1/1:80:1,79:1:36:79:2816:-196.891,-20.6588,0
chr07	5790568	.	C	G	135039	PASS	AB=0.614269;ABP=495.802;AC=139;AF=0.747312;AN=186;AO=6439;CIGAR=1X;DP=8122;DPB=8122;DPRA=0;EPP=13985.1;EPPR=3642.4;GTI=2;LEN=1;MEANALT=1.05376;MQM=59.9505;MQMR=59.9994;NS=93;NUMALT=1;ODDS=3.96104;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=230016;QR=60017;RO=1676;RPL=0;RPP=13985.1;RPPR=3642.4;RPR=6439;RUN=1;SAF=6439;SAP=13985.1;SAR=0;SRF=1676;SRP=3642.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:1,22:1:36:22:788:-67.6465,-3.32542,0	0/1:129:66,63:66:2345:63:2264:-165.189,0,-172.475	0/1:138:49,89:49:1748:89:3188:-245.591,0,-116.062	0/1:181:57,121:57:2044:121:4291:-332.419,0,-130.289	1/1:81:0,81:0:0:81:2893:-260.605,-24.3834,0	1/1:57:0,57:0:0:57:1997:-179.982,-17.1587,0	1/1:106:0,106:0:0:106:3762:-338.777,-31.9092,0	0/1:82:16,66:16:576:66:2326:-184.913,0,-27.4905	1/1:61:0,61:0:0:61:2196:-197.588,-18.3628,0	0/1:46:21,25:21:752:25:877:-65.3978,0,-54.1589	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	1/1:54:0,54:0:0:54:1936:-174.371,-16.2556,0	1/1:54:0,54:0:0:54:1929:-173.885,-16.2556,0	0/1:41:20,21:20:711:21:756:-56.025,0,-51.9734	0/1:35:19,16:19:675:16:572:-41.2774,0,-50.5409	0/1:37:23,14:23:828:14:504:-34.56,0,-63.706	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:23:10,13:10:356:13:464:-35.1738,0,-25.4576	0/1:236:80,154:80:2872:154:5491:-423.587,0,-187.989	1/1:116:0,116:0:0:116:4176:-376.02,-34.9195,0	0/1:82:35,47:35:1248:47:1688:-127.522,0,-87.9404	1/1:112:0,112:0:0:112:4009:-360.997,-33.7154,0	0/1:98:30,68:30:1080:68:2433:-189.723,0,-68.0123	0/1:48:17,30:17:604:30:1057:-80.931,0,-40.1826	0/1:241:63,178:63:2268:178:6338:-497.771,0,-131.834	1/1:188:1,187:1:36:187:6697:-599.206,-52.9954,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:258:114,144:114:4084:144:5138:-384.788,0,-290.08	1/1:156:0,156:0:0:156:5574:-501.781,-46.9607,0	1/1:170:0,170:0:0:170:6050:-544.598,-51.1751,0	.:.:.:.:.:.:.:.	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:171:86,85:86:3088:85:3056:-223.792,0,-226.671	0/1:182:55,127:55:1964:127:4541:-354.068,0,-122.248	0/1:54:26,28:26:932:28:989:-73.0488,0,-67.9432	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:118:42,76:42:1508:76:2728:-210.241,0,-100.493	0/1:29:14,15:14:495:15:536:-39.8449,0,-36.1532	0/1:132:33,99:33:1176:99:3526:-277.811,0,-66.4118	0/1:45:23,22:23:828:22:792:-58.0593,0,-61.2978	0/1:44:18,26:18:640:26:932:-70.9412,0,-44.684	1/1:105:0,105:0:0:105:3756:-338.24,-31.6082,0	1/1:136:0,136:0:0:136:4884:-439.693,-40.9401,0	0/1:157:59,98:59:2116:98:3489:-266.959,0,-143.447	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:124:49,75:49:1760:75:2681:-204.206,0,-121.356	0/1:112:36,76:36:1296:76:2721:-211.41,0,-83.2286	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:122:40,82:40:1428:82:2944:-228.467,0,-92.0919	1/1:80:0,80:0:0:80:2868:-258.354,-24.0824,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:113:50,63:50:1788:63:2256:-169.283,0,-127.186	0/1:29:7,22:7:252:22:788:-62.5043,0,-14.2991	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:124:0,124:0:0:124:4441:-399.859,-37.3277,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:242:0,241:0:0:241:8599:-773.583,-72.5482,0	1/1:221:4,217:4:140:217:7740:-683.678,-53.5831,0	0/1:44:19,25:19:680:25:896:-67.715,0,-48.2838	1/1:111:0,111:0:0:111:3965:-357.04,-33.4143,0	0/1:179:60,119:60:2152:119:4264:-330.054,0,-140.063	0/1:116:55,61:55:1968:61:2188:-162.266,0,-142.476	0/1:26:18,8:18:648:8:284:-18.0766,0,-50.8251	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:90:49,41:49:1752:41:1453:-103.971,0,-130.871	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:127:0,127:0:0:127:4530:-407.864,-38.2308,0	0/1:27:9,18:9:320:18:640:-49.8015,0,-21.0145	1/1:214:0,214:0:0:214:7606:-684.565,-64.4204,0	1/1:200:0,200:0:0:200:7104:-639.408,-60.206,0	0/1:96:32,64:32:1148:64:2251:-173.945,0,-74.731	1/1:98:0,98:0:0:98:3520:-317.009,-29.5009,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:132:0,132:0:0:132:4740:-426.75,-39.736,0	0/1:80:30,50:30:1076:50:1766:-135.031,0,-73.0705	0/1:192:44,148:44:1572:148:5300:-419.309,0,-83.9738	0/1:73:35,38:35:1256:38:1364:-101.086,0,-91.3701	0/1:49:32,17:32:1152:17:612:-40.663,0,-89.2397	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:100:46,54:46:1643:54:1936:-144.413,0,-118.055	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:57:0,57:0:0:57:2037:-183.6,-17.1587,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:84:41,43:41:1468:43:1540:-113.607,0,-107.13	0/1:39:26,13:26:932:13:453:-29.3595,0,-72.4587	1/1:135:0,135:0:0:135:4803:-432.423,-40.6391,0	1/1:78:0,78:0:0:78:2795:-251.789,-23.4803,0
chr07	5793821	.	C	T	35517.9	PASS	AB=0.557724;ABP=109.804;AC=52;AF=0.276596;AN=188;AO=2070;CIGAR=1X;DP=5773;DPB=5773;DPRA=1.50994;EPP=4497.96;EPPR=8039.63;GTI=7;LEN=1;MEANALT=1.01852;MQM=59.9763;MQMR=59.9889;NS=94;NUMALT=1;ODDS=0.888145;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73693;QR=130678;RO=3701;RPL=2069;RPP=4489.28;RPPR=8022.27;RPR=1;RUN=1;SAF=2069;SAP=4489.28;SAR=1;SRF=3699;SRP=8022.27;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:24,18:24:864:18:644:-45.6473,0,-65.4393	0/1:91:29,61:29:1017:61:2165:-167.663,0,-64.3874	0/1:120:46,74:46:1624:74:2638:-201.542,0,-110.323	0/1:146:71,75:71:2493:75:2669:-196.504,0,-180.673	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:21:21,0:21:728:0:0:0,-6.32163,-65.8377	0/0:41:41,0:41:1442:0:0:0,-12.3422,-130.072	0/1:83:27,56:27:953:56:1999:-155.198,0,-61.0978	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.414	0/1:42:26,16:26:936:16:572:-39.1702,0,-71.9162	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:59:58,0:58:2051:0:0:0,-17.4597,-184.502	0/0:45:45,0:45:1588:0:0:0,-13.5463,-143.21	0/1:25:15,10:15:528:10:354:-24.6737,0,-40.3256	0/1:44:21,23:21:756:23:828:-61.5988,0,-55.1219	0/1:60:26,34:26:905:34:1197:-89.9714,0,-63.7008	0/0:25:25,0:25:875:0:0:0,-7.52575,-79.0661	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/1:26:9,17:9:320:17:612:-47.5867,0,-21.3156	0/1:359:173,186:173:6116:186:6647:-490.218,0,-442.447	0/0:86:86,0:86:3054:0:0:0,-25.8886,-275.09	0/1:164:39,125:39:1379:125:4443:-350.673,0,-75.0391	0/0:64:64,0:64:2255:0:0:0,-19.2659,-203.211	0/1:43:26,17:26:909:17:612:-42.4691,0,-69.1791	0/1:63:28,35:28:985:35:1260:-94.7406,0,-69.9966	0/1:155:77,78:77:2730:78:2791:-204.77,0,-199.284	0/0:186:186,0:186:6586:0:0:0,-55.9916,-592.824	0/0:19:19,0:19:663:0:0:0,-5.71957,-59.9935	0/1:180:92,88:92:3233:88:3122:-227.02,0,-237.006	0/0:62:58,4:58:2038:4:144:0,-5.35024,-170.375	0/0:57:57,0:57:2004:0:0:0,-17.1587,-180.631	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:22:15,7:15:517:7:252:-16.4063,0,-40.2319	0/1:159:80,79:80:2823:79:2819:-206.085,0,-206.445	0/1:87:43,44:43:1501:44:1554:-113.961,0,-109.191	0/1:28:21,7:21:740:7:248:-14.2354,0,-58.4945	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:71:29,42:29:1019:42:1500:-113.921,0,-70.6482	0/1:16:8,8:8:279:8:284:-21.0869,0,-20.6311	0/1:96:50,46:50:1777:46:1634:-118.448,0,-131.312	0/1:28:17,11:17:608:11:387:-26.7371,0,-46.6232	0/1:33:9,24:9:316:24:860:-67.7878,0,-18.8449	0/0:87:87,0:87:3050:0:0:0,-26.1896,-274.728	0/0:91:90,1:90:3202:1:36:0,-23.7955,-284.805	0/1:87:39,48:39:1392:48:1694:-126.555,0,-99.3894	0/0:51:51,0:51:1784:0:0:0,-15.3525,-160.84	0/1:47:24,23:24:864:23:803:-58.4378,0,-63.9342	0/1:94:42,52:42:1493:52:1832:-136.861,0,-106.366	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:97:42,55:42:1496:55:1972:-148.555,0,-105.735	0/0:35:35,0:35:1224:0:0:0,-10.536,-110.461	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:73:35,38:35:1227:38:1315:-96.6684,0,-88.7579	0/1:74:37,37:37:1316:37:1323:-97.0951,0,-96.4656	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/0:58:58,0:58:2038:0:0:0,-17.4597,-183.691	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:100:100,0:100:3530:0:0:0,-30.103,-317.91	0/0:123:123,0:123:4285:0:0:0,-37.0267,-385.83	0/1:44:18,26:18:644:26:927:-70.502,0,-45.0453	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:99:46,53:46:1612:53:1854:-137.296,0,-115.564	0/1:121:17,104:17:612:104:3693:-296.149,0,-18.9888	0/1:14:9,5:9:316:5:176:-11.9706,0,-24.5644	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:86:86,0:86:3054:0:0:0,-25.8886,-275.09	0/1:48:27,21:27:950:21:743:-52.7439,0,-71.364	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.004	0/0:123:123,0:123:4327:0:0:0,-37.0267,-389.605	0/1:97:36,61:36:1296:61:2184:-167.626,0,-87.744	0/0:24:23,1:23:815:1:36:0,-3.62644,-70.0725	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:39:39,0:39:1348:0:0:0,-11.7402,-121.613	0/1:120:48,72:48:1678:72:2592:-197.404,0,-115.181	0/1:103:35,68:35:1243:68:2442:-189.029,0,-81.1678	0/1:55:19,36:19:672:36:1276:-98.5864,0,-44.2502	0/1:35:20,15:20:689:15:540:-38.4005,0,-51.7923	0/0:27:27,0:27:952:0:0:0,-8.12781,-85.9952	0/1:103:48,55:48:1699:55:1972:-146.749,0,-122.189	0/0:15:15,0:15:512:0:0:0,-4.51545,-46.4017	0/0:40:40,0:40:1408:0:0:0,-12.0412,-127.017	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/1:68:36,32:36:1253:32:1143:-82.7087,0,-92.5998	0/1:55:11,44:11:388:44:1541:-122.423,0,-18.7007	0/0:67:67,0:67:2321:0:0:0,-20.169,-209.146	0/0:72:72,0:72:2559:0:0:0,-21.6742,-230.56
chr07	5794064	.	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chr07	5910888	.	A	G	41120.9	PASS	AB=0.532874;ABP=45.2706;AC=51;AF=0.277174;AN=184;AO=2412;CIGAR=1X;DP=7594;DPB=7594;DPRA=1.25116;EPP=5240.6;EPPR=11253.4;GTI=4;LEN=1;MEANALT=1.01754;MQM=59.4979;MQMR=53.6012;NS=92;NUMALT=1;ODDS=0.877251;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86016;QR=185580;RO=5181;RPL=0;RPP=5240.6;RPPR=11253.4;RPR=2412;RUN=1;SAF=2412;SAP=5240.6;SAR=0;SRF=5181;SRP=11253.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:14,10:14:504:10:356:-25.1565,0,-38.2966	0/1:130:55,75:55:1972:75:2673:-201.649,0,-137.204	0/1:83:41,42:41:1453:42:1508:-110.985,0,-105.451	0/1:86:44,42:44:1576:42:1512:-110.479,0,-116.019	0/0:36:35,1:35:1256:1:36:0,-7.2388,-109.407	0/0:63:63,0:63:2256:0:0:0,-18.9649,-200.665	0/0:108:108,0:108:3869:0:0:0,-32.5112,-347.784	0/1:159:87,72:87:3120:72:2582:-184.743,0,-231.147	0/0:60:60,0:60:2160:0:0:0,-18.0618,-192.359	0/1:133:47,86:47:1692:86:3047:-233.764,0,-112.241	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5495	0/0:49:49,0:49:1756:0:0:0,-14.7505,-157.753	0/0:46:46,0:46:1656:0:0:0,-13.8474,-148.836	0/1:68:31,37:31:1104:37:1332:-99.6904,0,-78.9698	0/1:47:22,25:22:788:25:888:-66.0906,0,-55.9801	0/1:30:20,10:20:716:10:356:-23.3503,0,-55.616	0/0:37:37,0:37:1332:0:0:0,-11.1381,-119.387	0/1:48:26,22:26:936:22:792:-57.1562,0,-69.6115	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.6859	0/1:153:70,83:70:2516:83:2969:-221.369,0,-180.132	0/0:95:95,0:95:3382:0:0:0,-28.5978,-303.203	0/1:96:36,59:36:1292:59:2116:-161.784,0,-87.3355	0/0:108:108,0:108:3880:0:0:0,-32.5112,-348.735	0/1:125:68,57:68:2436:57:2052:-147.175,0,-180.765	0/1:57:20,37:20:712:37:1313:-101.155,0,-47.1576	0/1:330:120,210:120:4312:210:7457:-571.349,0,-288.208	0/0:147:147,0:147:5265:0:0:0,-44.2514,-471.936	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.0713	0/1:189:72,117:72:2580:117:4163:-317.39,0,-174.947	0/0:130:130,0:130:4672:0:0:0,-39.1339,-417.804	0/0:137:137,0:137:4920:0:0:0,-41.2411,-441.676	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.38905	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.162	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5048	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	.:.:.:.:.:.:.:.	0/1:171:74,97:74:2660:97:3468:-260.64,0,-187.918	0/1:201:89,112:89:3181:112:3964:-296.417,0,-225.03	0/1:32:17,15:17:612:15:532:-38.5719,0,-45.4529	.:.:.:.:.:.:.:.	0/1:106:42,64:42:1504:64:2275:-172.873,0,-103.248	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8491	0/1:92:53,39:53:1900:39:1389:-97.603,0,-142.904	0/1:58:33,25:33:1188:25:896:-63.4997,0,-89.5961	0/1:59:26,33:26:936:33:1165:-87.3895,0,-66.7332	0/0:96:96,0:96:3444:0:0:0,-28.8989,-309.691	0/0:102:102,0:102:3664:0:0:0,-30.7051,-328.148	0/1:150:87,63:87:3101:63:2247:-157.318,0,-233.936	0/0:90:90,0:90:3220:0:0:0,-27.0927,-289.398	0/1:97:57,40:57:2052:40:1406:-97.5872,0,-155.573	0/1:195:107,88:107:3828:88:3148:-224.839,0,-285.362	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59568	0/1:105:48,57:48:1724:57:2036:-151.72,0,-122.961	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.072	0/1:22:7,15:7:252:15:525:-40.9472,0,-16.3484	0/1:116:58,58:58:2076:58:2053:-150.068,0,-151.359	0/1:74:33,41:33:1173:41:1476:-110.807,0,-83.4794	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.4541	0/0:71:71,0:71:2525:0:0:0,-21.3731,-225.447	0/0:110:109,1:109:3916:1:36:0,-29.6106,-348.256	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83179	0/0:144:144,0:144:5156:0:0:0,-43.3483,-462.279	0/0:227:227,0:227:8124:0:0:0,-68.3338,-729.14	0/1:78:40,38:40:1432:38:1358:-98.2593,0,-105.384	0/0:66:66,0:66:2345:0:0:0,-19.868,-210.778	0/1:170:97,73:97:3443:73:2584:-181.52,0,-258.442	0/1:97:34,63:34:1216:63:2256:-174.092,0,-79.9212	0/1:11:4,7:4:144:7:252:-19.7176,0,-9.98341	0/0:84:83,1:83:2984:1:36:0,-21.8989,-263.203	0/1:91:40,51:40:1436:51:1828:-137.35,0,-101.706	0/1:16:3,13:3:108:13:460:-36.9189,0,-5.25142	0/0:150:147,3:147:5272:3:100:0,-36.0596,-462.771	0/1:56:32,24:32:1152:24:864:-61.2167,0,-86.4046	0/0:199:199,0:199:7129:0:0:0,-59.905,-639.522	0/0:108:107,1:107:3814:1:36:0,-29.0085,-339.386	0/1:65:42,23:42:1489:23:795:-52.2955,0,-113.631	0/0:72:72,0:72:2558:0:0:0,-21.6742,-228.961	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.3753	0/0:49:49,0:49:1745:0:0:0,-14.7505,-156.851	0/1:93:45,48:45:1605:48:1720:-127.082,0,-116.014	0/1:164:86,78:86:3088:78:2789:-201.871,0,-228.391	0/1:106:38,68:38:1360:68:2440:-187.938,0,-89.7535	0/1:54:29,25:29:1044:25:889:-64.0722,0,-77.6992	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.044	0/1:105:45,60:45:1605:60:2152:-162.289,0,-112.843	0/0:43:42,1:42:1512:1:36:0,-9.34601,-131.867	0/0:58:58,0:58:2080:0:0:0,-17.4597,-185.392	0/0:55:55,0:55:1976:0:0:0,-16.5566,-176.794	0/1:17:9,8:9:324:8:273:-19.7827,0,-24.3285	0/1:50:23,27:23:828:27:972:-72.7464,0,-59.6829	0/1:61:16,45:16:576:45:1620:-127.722,0,-33.7723	0/0:91:91,0:91:3245:0:0:0,-27.3937,-291.355	0/0:57:56,1:56:2012:1:36:0,-13.5604,-177.592
chr07	5910892	.	G	A	106272	PASS	AB=0.470916;ABP=35.9773;AC=133;AF=0.722826;AN=184;AO=5203;CIGAR=1X;DP=7585;DPB=7585;DPRA=20.8269;EPP=11240.5;EPPR=5121.26;GTI=4;LEN=1;MEANALT=1.05495;MQM=53.5895;MQMR=59.5877;NS=92;NUMALT=1;ODDS=1.6066;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186277;QR=84960;RO=2377;RPL=7;RPP=11240.5;RPPR=5121.26;RPR=5196;RUN=1;SAF=5203;SAP=11301.2;SAR=0;SRF=2377;SRP=5164.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:11,14:11:388:14:504:-37.9956,0,-27.7316	0/1:130:75,55:75:2688:55:1965:-136.396,0,-202.992	0/1:83:43,40:43:1533:40:1417:-102.327,0,-113.232	0/1:85:41,44:41:1472:44:1576:-116.368,0,-107.182	1/1:36:1,35:1:36:35:1233:-107.417,-7.23881,0	1/1:63:0,63:0:0:63:2252:-201.322,-18.9649,0	1/1:109:0,109:0:0:109:3897:-350.378,-32.8123,0	0/1:159:72,87:72:2584:87:3109:-230.104,0,-184.917	1/1:61:0,61:0:0:61:2176:-194.092,-18.3628,0	0/1:132:84,48:84:3020:48:1720:-115.109,0,-231.644	1/1:22:0,22:0:0:22:792:-71.5495,-6.62266,0	1/1:49:0,49:0:0:49:1741:-156.41,-14.7505,0	1/1:46:0,46:0:0:46:1656:-148.836,-13.8474,0	0/1:65:35,30:35:1252:30:1080:-77.6741,0,-93.3961	0/1:48:25,23:25:896:23:805:-57.7894,0,-66.5109	0/1:30:10,20:10:356:20:716:-55.616,0,-23.3503	1/1:37:0,37:0:0:37:1328:-119.031,-11.1381,0	0/1:47:21,26:21:756:26:936:-69.9125,0,-54.2188	0/1:14:7,7:7:252:7:252:-18.7566,0,-18.8145	0/1:153:82,71:82:2937:71:2552:-183.284,0,-218.49	1/1:95:0,95:0:0:95:3408:-305.538,-28.5979,0	0/1:95:58,37:58:2080:37:1321:-90.2718,0,-158.87	1/1:109:0,109:0:0:109:3916:-351.943,-32.8123,0	0/1:127:59,68:59:2096:68:2429:-179.53,0,-150.52	0/1:57:37,20:37:1283:20:720:-47.8741,0,-98.5745	0/1:329:206,122:206:7360:122:4373:-293.443,0,-562.919	1/1:147:0,147:0:0:147:5256:-471.209,-44.2514,0	1/1:18:0,18:0:0:18:648:-58.4157,-5.41854,0	0/1:190:117,73:117:4204:73:2597:-176.175,0,-320.479	1/1:130:0,130:0:0:130:4660:-417.384,-39.1339,0	1/1:136:0,136:0:0:136:4865:-436.761,-40.9401,0	0/1:4:3,1:3:104:1:36:-2.38905,0,-8.49869	1/1:12:0,12:0:0:12:413:-37.4459,-3.61236,0	1/1:5:0,5:0:0:5:180:-16.5048,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	.:.:.:.:.:.:.:.	0/1:168:92,76:92:3303:76:2724:-194.369,0,-246.911	0/1:199:110,89:110:3933:89:3165:-224.284,0,-294.23	0/1:32:15,17:15:521:17:612:-45.4529,0,-37.5752	.:.:.:.:.:.:.:.	0/1:106:63,43:63:2249:43:1525:-105.188,0,-170.615	0/1:13:7,6:7:252:6:216:-15.8491,0,-19.1156	0/1:94:41,53:41:1468:53:1904:-142.657,0,-103.682	0/1:56:23,33:23:828:33:1184:-89.8393,0,-57.9864	0/1:59:33,26:33:1184:26:936:-66.7332,0,-89.1005	1/1:96:0,96:0:0:96:3425:-307.978,-28.8989,0	1/1:103:0,103:0:0:103:3700:-331.383,-31.0061,0	0/1:151:64,87:64:2277:87:3128:-236.057,0,-159.713	1/1:90:0,90:0:0:90:3224:-289.754,-27.0927,0	0/1:97:39,58:39:1396:58:2076:-157.734,0,-96.3677	0/1:194:87,106:87:3109:106:3802:-283.273,0,-221.572	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	0/1:106:57,49:57:2052:49:1759:-125.651,0,-153.01	1/1:58:0,58:0:0:58:2084:-187.327,-17.4597,0	0/1:23:16,7:16:572:7:252:-16.0474,0,-44.8815	0/1:112:56,56:56:1993:56:2016:-147.479,0,-145.908	0/1:74:40,34:40:1424:34:1224:-88.0625,0,-106.129	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:19:0,19:0:0:19:680:-61.4535,-5.71957,0	1/1:71:0,71:0:0:71:2548:-228.129,-21.3731,0	1/1:111:0,111:0:0:111:3980:-357.499,-33.4143,0	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:146:0,146:0:0:146:5210:-467.067,-43.9504,0	1/1:228:0,228:0:0:228:8180:-734.171,-68.6348,0	0/1:77:37,40:37:1324:40:1440:-106.4,0,-95.7865	1/1:66:0,66:0:0:66:2351:-211.347,-19.868,0	0/1:169:70,98:70:2466:98:3514:-265.114,0,-171.277	0/1:99:65,34:65:2286:34:1224:-80.0368,0,-176.171	0/1:11:7,4:7:252:4:144:-9.98341,0,-19.7176	1/1:84:0,84:0:0:84:3009:-268.651,-25.2865,0	0/1:91:51,40:51:1832:40:1440:-102.064,0,-137.637	0/1:16:13,3:13:468:3:108:-5.25142,0,-37.6432	1/1:150:1,149:1:36:149:5336:-473.701,-41.5562,0	0/1:57:24,33:24:852:33:1180:-88.6231,0,-59.8335	1/1:198:0,198:0:0:198:7070:-634.25,-59.6039,0	1/1:108:0,108:0:0:108:3865:-347.385,-32.5112,0	0/1:65:21,43:21:756:43:1544:-118.458,0,-48.8741	1/1:71:0,71:0:0:71:2548:-228.061,-21.3731,0	1/1:6:0,6:0:0:6:216:-19.7408,-1.80618,0	1/1:50:0,50:0:0:50:1788:-160.655,-15.0515,0	0/1:94:48,46:48:1724:46:1652:-119.926,0,-127.14	0/1:163:78,85:78:2781:85:3056:-225.812,0,-201.455	0/1:101:64,37:64:2285:37:1320:-88.5248,0,-175.498	0/1:54:25,29:25:900:29:1032:-76.6221,0,-65.0654	1/1:54:0,54:0:0:54:1929:-173.542,-16.2556,0	0/1:105:59,45:59:2116:45:1616:-113.782,0,-159.019	1/1:43:1,42:1:36:42:1511:-131.81,-9.34602,0	1/1:58:0,58:0:0:58:2066:-184.094,-17.4597,0	1/1:55:0,55:0:0:55:1969:-176.33,-16.5567,0	0/1:17:8,9:8:288:9:324:-24.3285,0,-21.1499	0/1:50:26,24:26:936:24:849:-61.5665,0,-69.508	0/1:61:44,17:44:1584:17:612:-37.0084,0,-124.484	1/1:92:0,92:0:0:92:3304:-296.653,-27.6948,0	1/1:57:1,56:1:36:56:1997:-176.243,-13.5604,0
chr07	5910923	.	G	A	103616	PASS	AB=0.466891;ABP=45.4283;AC=133;AF=0.722826;AN=184;AO=5132;CIGAR=1X;DP=7515;DPB=7515;DPRA=20.6346;EPP=11129.6;EPPR=5140.77;GTI=4;LEN=1;MEANALT=1.01099;MQM=53.5752;MQMR=59.6129;NS=92;NUMALT=1;ODDS=0.275926;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182813;QR=84410;RO=2382;RPL=5130;RPP=11129.6;RPPR=5140.77;RPR=2;RUN=1;SAF=5132;SAP=11147;SAR=0;SRF=2382;SRP=5175.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:10,14:10:356:14:504:-38.2966,0,-25.1565	0/1:129:76,53:76:2676:53:1892:-130.261,0,-202.214	0/1:83:43,40:43:1513:40:1407:-101.444,0,-111.45	0/1:86:42,44:42:1512:44:1572:-115.709,0,-110.479	1/1:34:1,33:1:36:33:1175:-102.258,-6.63675,0	1/1:65:0,65:0:0:65:2314:-206.007,-19.567,0	1/1:109:0,109:0:0:109:3896:-350.228,-32.8123,0	0/1:157:71,86:71:2531:86:3043:-225.35,0,-180.747	1/1:61:0,61:0:0:61:2169:-193.901,-18.3628,0	0/1:131:84,47:84:2978:47:1679:-111.676,0,-228.789	1/1:22:0,22:0:0:22:775:-70.0212,-6.62266,0	1/1:48:0,48:0:0:48:1724:-154.878,-14.4494,0	1/1:46:0,46:0:0:46:1639:-147.406,-13.8474,0	0/1:66:36,30:36:1266:30:1067:-76.2078,0,-94.3512	0/1:48:25,23:25:883:23:816:-58.191,0,-65.338	0/1:29:9,20:9:307:20:708:-55.2004,0,-19.2304	1/1:35:0,35:0:0:35:1243:-111.467,-10.5361,0	0/1:48:22,26:22:773:26:907:-67.0835,0,-55.44	0/1:15:7,8:7:243:8:280:-20.9677,0,-17.692	0/1:150:83,67:83:2958:67:2382:-168.996,0,-221.284	1/1:91:0,91:0:0:91:3236:-290.164,-27.3937,0	0/1:95:58,37:58:2041:37:1328:-90.7924,0,-155.36	1/1:108:0,108:0:0:108:3859:-346.806,-32.5112,0	0/1:125:59,66:59:2116:66:2352:-173.966,0,-152.927	0/1:55:36,19:36:1279:19:680:-44.884,0,-98.8292	0/1:325:203,122:203:7217:122:4337:-292.051,0,-551.497	1/1:144:0,144:0:0:144:5148:-461.656,-43.3483,0	1/1:18:0,18:0:0:18:632:-56.9979,-5.41854,0	0/1:187:117,69:117:4127:69:2464:-165.294,0,-315.168	1/1:129:0,129:0:0:129:4554:-407.683,-38.8329,0	1/1:133:0,133:0:0:133:4764:-427.653,-40.037,0	0/1:4:3,1:3:93:1:36:-2.38905,0,-7.47261	1/1:11:0,11:0:0:11:379:-34.3956,-3.31133,0	1/1:4:0,4:0:0:4:140:-12.9104,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	.:.:.:.:.:.:.:.	0/1:170:95,75:95:3362:75:2667:-188.659,0,-251.61	0/1:199:111,88:111:3928:88:3132:-221.24,0,-293.788	0/1:31:14,17:14:500:17:599:-44.5907,0,-35.996	.:.:.:.:.:.:.:.	0/1:103:63,40:63:2233:40:1424:-97.1054,0,-169.95	0/1:13:7,6:7:252:6:212:-15.4861,0,-19.1156	0/1:93:41,52:41:1464:52:1856:-138.653,0,-103.623	0/1:56:24,32:24:851:32:1139:-85.7938,0,-60.0518	0/1:60:34,26:34:1172:26:932:-66.0743,0,-87.7185	1/1:96:0,96:0:0:96:3417:-307.264,-28.8989,0	1/1:102:0,102:0:0:102:3639:-326.138,-30.7051,0	0/1:150:63,87:63:2247:87:3115:-235.194,0,-157.317	1/1:89:0,89:0:0:89:3167:-284.689,-26.7917,0	0/1:96:41,55:41:1440:55:1955:-147.159,0,-100.367	0/1:191:86,105:86:3046:105:3747:-279.279,0,-216.865	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	0/1:105:56,49:56:1977:49:1748:-124.961,0,-146.582	1/1:58:0,58:0:0:58:2063:-185.505,-17.4597,0	0/1:23:16,7:16:568:7:252:-16.0474,0,-44.52	0/1:112:55,57:55:1941:57:2040:-149.331,0,-141.224	0/1:74:40,34:40:1409:34:1216:-87.3448,0,-104.803	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:19:0,19:0:0:19:684:-61.8133,-5.71957,0	1/1:71:0,71:0:0:71:2530:-225.912,-21.3731,0	1/1:109:0,109:0:0:109:3879:-348.164,-32.8123,0	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:146:0,146:0:0:146:5236:-469.541,-43.9504,0	1/1:223:0,223:0:0:223:7959:-714.828,-67.1297,0	0/1:76:38,38:38:1356:38:1351:-98.7115,0,-98.9706	1/1:65:0,65:0:0:65:2320:-208.519,-19.567,0	0/1:166:69,97:69:2458:97:3467:-261.941,0,-171.369	0/1:97:63,34:63:2251:34:1216:-79.9212,0,-173.628	0/1:11:7,4:7:252:4:144:-9.98341,0,-19.7176	1/1:83:0,83:0:0:83:2952:-264.285,-24.9855,0	0/1:90:50,40:50:1762:40:1427:-101.256,0,-131.75	0/1:16:13,3:13:464:3:108:-5.25142,0,-37.281	1/1:148:1,147:1:36:147:5236:-464.982,-40.9542,0	0/1:55:23,32:23:824:32:1139:-85.5826,0,-57.9185	1/1:197:0,197:0:0:197:7010:-629.018,-59.3029,0	1/1:105:0,105:0:0:105:3746:-336.692,-31.6082,0	0/1:66:23,43:23:820:43:1519:-116.142,0,-54.2503	1/1:71:0,71:0:0:71:2536:-226.997,-21.3731,0	1/1:6:0,6:0:0:6:208:-19.0193,-1.80618,0	1/1:50:0,50:0:0:50:1775:-159.529,-15.0515,0	0/1:92:47,45:47:1663:45:1598:-115.691,0,-122.259	0/1:162:79,83:79:2805:83:2972:-218.564,0,-203.913	0/1:104:68,36:68:2399:36:1265:-82.5289,0,-184.853	0/1:54:25,29:25:896:29:1021:-75.7567,0,-64.7047	1/1:55:0,55:0:0:55:1958:-176.192,-16.5567,0	0/1:104:59,45:59:2074:45:1608:-113.418,0,-155.57	1/1:42:1,41:1:36:41:1464:-127.572,-9.04499,0	1/1:58:0,58:0:0:58:2040:-182.261,-17.4597,0	1/1:54:0,54:0:0:54:1911:-171.054,-16.2556,0	0/1:17:8,9:8:284:9:324:-24.3285,0,-20.7858	0/1:49:26,23:26:923:23:824:-59.6259,0,-68.6363	0/1:63:46,17:46:1632:17:599:-35.2344,0,-128.198	1/1:90:0,90:0:0:90:3231:-290.065,-27.0927,0	1/1:56:1,55:1:36:55:1955:-172.478,-13.2594,0
chr07	5969757	.	G	A	83382.6	PASS	AB=0.486024;ABP=9.74782;AC=134;AF=0.72043;AN=186;AO=4207;CIGAR=1X;DP=6254;DPB=6254;DPRA=0;EPP=9129.71;EPPR=4448.01;GTI=4;LEN=1;MEANALT=1;MQM=59.9919;MQMR=60;NS=93;NUMALT=1;ODDS=2.91587;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148848;QR=72785;RO=2047;RPL=4207;RPP=9138.39;RPPR=4439.33;RPR=0;RUN=1;SAF=4206;SAP=9129.71;SAR=1;SRF=2046;SRP=4439.33;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:18,19:18:630:19:661:-48.6735,0,-45.8865	0/1:110:44,66:44:1571:66:2324:-176.306,0,-108.568	0/1:159:89,70:89:3165:70:2488:-176.31,0,-237.211	0/1:183:89,94:89:3166:94:3337:-245.459,0,-230.076	1/1:35:1,34:1:36:34:1203:-104.977,-6.93778,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:65:0,65:0:0:65:2286:-205.999,-19.567,0	0/1:70:43,27:43:1520:27:934:-63.2966,0,-116.018	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:79:42,37:42:1489:37:1309:-94.3282,0,-110.521	1/1:43:0,43:0:0:43:1527:-137.722,-12.9443,0	1/1:50:0,50:0:0:50:1763:-158.953,-15.0515,0	1/1:50:0,50:0:0:50:1752:-157.961,-15.0515,0	0/1:65:23,42:23:816:42:1482:-114.102,0,-54.1948	0/1:38:23,15:23:820:15:523:-35.9593,0,-62.6834	0/1:45:24,21:24:856:21:752:-54.4599,0,-63.8148	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:33:20,13:20:694:13:456:-31.4392,0,-52.8464	0/1:22:9,13:9:320:13:447:-33.935,0,-22.5197	0/1:67:47,20:47:1663:20:708:-43.8766,0,-129.788	1/1:84:0,84:0:0:84:2977:-268.163,-25.2865,0	0/1:77:51,26:51:1828:26:924:-60.2983,0,-141.622	1/1:34:1,33:1:32:33:1171:-102.497,-7.03571,0	0/1:53:18,35:18:648:35:1225:-94.5952,0,-42.6973	0/1:20:12,8:12:432:8:284:-19.8828,0,-33.2006	0/1:144:72,72:72:2576:72:2542:-185.68,0,-188.741	1/1:115:1,114:1:36:114:4049:-361.001,-31.0202,0	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	0/1:146:68,78:68:2424:78:2768:-205.411,0,-174.466	0/1:86:9,77:9:324:77:2709:-218.163,0,-3.61727	1/1:99:1,98:1:36:98:3442:-306.397,-26.2037,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:121:63,58:63:2231:58:2072:-150.298,0,-164.629	0/1:129:62,67:62:2211:67:2357:-173.555,0,-160.421	0/1:52:24,28:24:864:28:1000:-74.6618,0,-62.429	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:107:52,55:52:1864:55:1952:-143.744,0,-135.829	0/1:37:17,20:17:604:20:716:-53.6296,0,-43.5525	0/1:112:63,49:63:2219:49:1744:-123.529,0,-166.257	0/1:17:8,9:8:270:9:320:-24.0248,0,-19.5101	0/1:31:17,14:17:595:14:496:-35.6423,0,-44.5447	1/1:48:0,48:0:0:48:1678:-151.303,-14.4494,0	1/1:81:1,80:1:27:80:2829:-252.149,-21.6836,0	0/1:162:87,75:87:3105:75:2664:-191.24,0,-230.909	1/1:93:0,93:0:0:93:3297:-296.949,-27.9958,0	0/1:87:51,36:51:1832:36:1288:-90.034,0,-138.971	0/1:172:91,81:91:3231:81:2884:-208.02,0,-239.233	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:145:62,83:62:2220:83:2918:-219.205,0,-156.415	1/1:61:0,61:0:0:61:2168:-195.387,-18.3628,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:92:56,36:56:1994:36:1275:-87.3575,0,-152.038	0/1:15:4,11:4:144:11:373:-29.3798,0,-8.79817	.:.:.:.:.:.:.:.	1/1:23:0,23:0:0:23:819:-74.0316,-6.92369,0	1/1:45:0,45:0:0:45:1583:-142.76,-13.5464,0	1/1:91:0,91:0:0:91:3206:-288.763,-27.3937,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:82:0,82:0:0:82:2909:-262.045,-24.6845,0	1/1:140:0,140:0:0:140:4975:-447.897,-42.1442,0	0/1:54:29,25:29:1028:25:877:-62.9896,0,-76.5774	1/1:62:0,62:0:0:62:2200:-198.266,-18.6639,0	0/1:46:30,16:30:1068:16:572:-37.966,0,-82.5847	0/1:191:132,59:132:4703:59:2112:-132.852,0,-365.935	0/1:27:6,21:6:216:21:748:-59.5175,0,-11.6627	1/1:62:0,62:0:0:62:2193:-197.635,-18.6639,0	0/1:69:38,31:38:1340:31:1094:-77.9972,0,-100.129	0/1:22:10,12:10:356:12:432:-32.5985,0,-25.7586	1/1:89:0,89:0:0:89:3173:-285.793,-26.7917,0	0/1:49:28,21:28:1004:21:756:-53.6168,0,-75.9254	1/1:120:0,120:0:0:120:4249:-382.592,-36.1236,0	1/1:72:0,72:0:0:72:2535:-228.397,-21.6742,0	0/1:101:48,53:48:1707:53:1835:-135.021,0,-123.511	1/1:57:0,57:0:0:57:2002:-180.45,-17.1587,0	1/1:21:0,21:0:0:21:729:-65.9287,-6.32163,0	1/1:91:0,91:0:0:91:3164:-284.982,-27.3937,0	0/1:83:48,35:48:1711:35:1233:-86.2866,0,-129.29	0/1:194:88,106:88:3125:106:3769:-281.01,0,-223.077	0/1:93:44,49:44:1572:49:1736:-128.529,0,-113.776	0/1:39:24,15:24:851:15:532:-36.4729,0,-65.1693	1/1:41:1,40:1:36:40:1424:-124.859,-8.74396,0	0/1:78:44,34:44:1571:34:1195:-84.3742,0,-118.201	1/1:29:0,29:0:0:29:1028:-92.833,-8.72987,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:53:0,53:0:0:53:1869:-168.487,-15.9546,0	0/1:52:23,29:23:782:29:1019:-76.3677,0,-55.0373	0/1:109:58,51:58:2057:51:1785:-128.118,0,-152.587	0/1:21:13,8:13:449:8:280:-19.2177,0,-34.4159	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:72:0,72:0:0:72:2550:-229.751,-21.6742,0
chr07	5969904	.	T	G	33845.7	PASS	AB=0.517117;ABP=12.8973;AC=53;AF=0.284946;AN=186;AO=2019;CIGAR=1X;DP=6410;DPB=6410;DPRA=1.39872;EPP=4387.21;EPPR=9522.75;GTI=2;LEN=1;MEANALT=1.08772;MQM=53.7717;MQMR=59.6854;NS=93;NUMALT=1;ODDS=0.0797329;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72052;QR=157013;RO=4384;RPL=2019;RPP=4387.21;RPPR=9522.75;RPR=0;RUN=1;SAF=0;SAP=4387.21;SAR=2019;SRF=0;SRP=9522.75;SRR=4384;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:13,24:13:464:24:864:-66.5603,0,-30.9512	0/1:70:34,36:34:1220:36:1292:-94.6093,0,-88.7482	0/1:144:78,66:78:2804:66:2356:-168.189,0,-209.235	0/1:205:111,94:111:3968:94:3364:-240.668,0,-295.442	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.202	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.141	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.471	0/1:59:28,31:28:1004:31:1101:-81.3915,0,-72.8884	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.136	0/1:85:46,39:46:1656:39:1374:-98.1795,0,-123.738	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0516	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:40:15,25:15:528:25:900:-69.0391,0,-35.8055	0/1:43:22,21:22:788:21:740:-53.8086,0,-58.3005	0/1:27:14,13:14:504:13:464:-33.9123,0,-37.5703	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.881	0/1:32:17,15:17:589:15:527:-38.0077,0,-43.7003	0/1:19:12,7:12:432:7:252:-17.2515,0,-33.4934	0/1:57:29,28:29:1036:28:1004:-73.2009,0,-76.3946	0/0:99:98,1:98:3508:1:36:0,-26.2088,-312.319	0/1:36:12,24:12:432:24:851:-65.9969,0,-28.3807	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.838	0/1:114:69,45:69:2484:45:1616:-110.644,0,-189.481	0/1:41:12,29:12:432:29:1036:-80.6852,0,-26.879	0/1:303:160,143:160:5722:143:5112:-368.072,0,-423.85	0/0:131:131,0:131:4697:0:0:0,-39.4349,-422.86	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:160:72,88:72:2573:88:3120:-232.077,0,-183.636	0/0:95:91,4:91:3260:4:144:0,-15.3068,-280.275	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.169	0/1:3:1,2:1:36:2:72:-5.92394,0,-2.69518	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	.:.:.:.:.:.:.:.	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4165	0/1:9:6,3:6:216:3:104:-6.78507,0,-17.0812	0/1:129:60,69:60:2152:69:2472:-183.652,0,-155.079	0/1:165:65,100:65:2336:100:3555:-269.577,0,-160.823	0/1:29:17,12:17:608:12:423:-29.5838,0,-46.314	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:125:50,74:50:1800:74:2620:-197.907,0,-124.591	0/1:30:16,14:16:576:14:500:-36.2027,0,-43.0944	0/1:102:53,49:53:1908:49:1743:-125.731,0,-141.256	0/1:34:18,16:18:648:16:568:-41.0863,0,-48.4145	0/1:46:20,26:20:720:26:919:-69.1115,0,-51.2814	0/0:81:81,0:81:2855:0:0:0,-24.3834,-257.063	0/0:85:84,0:84:3016:0:0:0,-25.2865,-271.212	0/1:141:78,63:78:2796:63:2252:-159.526,0,-209.348	0/0:64:64,0:64:2288:0:0:0,-19.2659,-205.808	0/1:80:32,48:32:1148:48:1712:-130.096,0,-79.4717	0/1:145:62,82:62:2228:82:2940:-220.365,0,-157.108	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:144:64,80:64:2281:80:2868:-213.79,0,-162.194	0/0:14:13,1:13:468:1:36:0,-0.619852,-38.8617	0/1:14:9,5:9:324:5:180:-12.296,0,-25.2914	0/1:108:45,63:45:1616:63:2244:-169.018,0,-113.019	0/1:42:22,20:22:784:20:708:-51.3596,0,-58.2379	1/1:2:0,2:0:0:2:72:-6.82968,-0.60206,0	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0913	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.039	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.719	0/1:6:5,1:5:180:1:36:-1.7895,0,-14.7459	0/0:146:145,1:145:5171:1:36:0,-40.3558,-461.908	0/0:175:174,1:174:6202:1:36:0,-49.0846,-554.584	0/1:44:17,27:17:608:27:956:-72.7025,0,-41.8021	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.958	0/1:110:55,55:55:1968:55:1963:-142.844,0,-144.26	0/1:82:24,58:24:864:58:2070:-161.167,0,-53.3934	0/1:6:3,3:3:108:3:108:-8.2547,0,-8.26899	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.04	0/1:75:32,42:32:1144:42:1500:-112.49,0,-80.6306	0/1:7:2,5:2:72:5:180:-14.4329,0,-4.72951	0/0:113:113,0:113:4049:0:0:0,-34.0164,-364.529	0/1:47:16,31:16:576:31:1101:-84.9517,0,-38.0102	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.959	0/0:126:126,0:126:4497:0:0:0,-37.9298,-404.889	0/1:100:52,47:52:1872:47:1688:-121.667,0,-138.582	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.646	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.031	0/1:77:35,42:35:1245:42:1493:-110.877,0,-89.1547	0/1:197:89,107:89:3200:107:3829:-284.994,0,-228.789	0/1:76:45,31:45:1620:31:1116:-77.8008,0,-123.207	0/1:29:15,14:15:540:14:504:-36.8976,0,-40.2067	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.191	0/1:95:56,39:56:2008:39:1400:-97.5275,0,-152.346	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7897	0/0:55:54,0:54:1936:0:0:0,-16.2556,-174.104	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:23:18,5:18:644:5:180:-9.6049,0,-51.3669	0/1:52:26,26:26:928:26:932:-68.4246,0,-68.1709	0/1:41:19,22:19:676:22:783:-57.46,0,-48.8254	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.375	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.368
chr07	6117702	.	CT	TG,TT	247146	PASS	AB=0.542746,0.45663;ABP=104.742,107.734;AC=134,52;AF=0.72043,0.27957;AN=186;AO=8737,2941;CIGAR=2X,1X1M;DP=11690;DPB=11690;DPRA=0,1.10727;EPP=18975.2,6389.31;EPPR=7.35324;GTI=2;LEN=2,1;MEANALT=1.72043,2.10526;MQM=59.9845,59.9908;MQMR=60;NS=93;NUMALT=2;ODDS=0.0826324;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=309293,105112;QR=68;RO=2;RPL=0,0;RPP=18975.2,6389.31;RPPR=7.35324;RPR=8737,2941;RUN=1,1;SAF=8737,2941;SAP=18975.2,6389.31;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,29,13:0:0:29,13:1030,464:-122.111,-38.1841,-29.4542,-84.2831,0,-80.3698	1/2:215:0,123,92:0:0:123,92:4366,3288:-624.174,-268.445,-231.419,-356.085,0,-328.391	1/2:125:0,75,50:0:0:75,50:2653,1800:-363.311,-147.231,-124.653,-216.438,0,-201.386	1/2:269:0,150,119:0:0:150,119:5245,4268:-775.156,-348.475,-303.32,-427.035,0,-391.213	1/1:44:0,44,0:0:0:44,0:1571,0:-141.681,-13.2453,0,-141.681,-13.2453,-141.681	1/1:87:0,86,0:0:0:86,0:3032,0:-272.878,-25.8886,0,-272.878,-25.8886,-272.878	1/1:218:0,218,0:0:0:218,0:7656,0:-689.084,-65.6245,0,-689.084,-65.6245,-689.084	1/2:260:0,150,110:0:0:150,110:5326,3921:-753.933,-319.969,-274.815,-434.32,0,-401.206	1/1:130:0,130,0:0:0:130,0:4614,0:-415.425,-39.1339,0,-415.425,-39.1339,-415.425	1/2:71:0,39,32:0:0:39,32:1375,1148:-205.948,-93.9969,-82.2567,-112.307,0,-102.674	1/1:78:0,78,0:0:0:78,0:2791,0:-251.431,-23.4803,0,-251.431,-23.4803,-251.431	1/1:59:0,59,0:0:0:59,0:2096,0:-188.908,-17.7608,0,-188.908,-17.7608,-188.908	1/1:76:0,76,0:0:0:76,0:2711,0:-244.233,-22.8783,0,-244.233,-22.8783,-244.233	1/2:62:0,28,34:0:0:28,34:967,1207:-177.26,-98.7003,-90.2714,-78.9095,0,-68.6745	1/2:74:0,40,34:0:0:40,34:1395,1220:-213.32,-99.8718,-87.8306,-113.802,0,-103.567	1/2:51:0,20,31:0:0:20,31:699,1116:-148.277,-91.4198,-85.3992,-57.211,0,-47.8791	1/1:89:0,88,0:0:0:88,0:3084,0:-277.426,-26.4906,0,-277.426,-26.4906,-277.426	1/1:81:0,81,0:0:0:81,0:2874,0:-258.895,-24.3834,0,-258.895,-24.3834,-258.895	1/2:64:0,46,18:0:0:46,18:1639,648:-186.824,-53.2333,-39.386,-133.95,0,-128.531	1/2:274:0,127,147:0:0:127,147:4521,5248:-796.635,-428.207,-389.977,-368.784,0,-324.532	1/1:257:0,256,0:0:0:256,0:9046,0:-813.686,-77.0637,0,-813.686,-77.0637,-813.686	1/2:69:0,25,44:0:0:25,44:888,1561:-199.892,-127.534,-120.009,-72.7122,0,-59.4669	1/1:107:0,107,0:0:0:107,0:3796,0:-341.837,-32.2102,0,-341.837,-32.2102,-341.837	1/2:129:0,82,47:0:0:82,47:2884,1692:-373.173,-138.418,-113.734,-235.111,0,-220.962	1/2:72:0,45,27:0:0:45,27:1581,964:-207.626,-78.949,-65.4027,-129.031,0,-120.903	1/2:429:0,241,187:0:0:241,187:8589,6686:-1245.34,-545.239,-472.691,-700.179,0,-643.886	1/1:340:0,340,0:0:0:340,0:12075,0:-1086.6,-102.35,0,-1086.6,-102.35,-1086.6	1/1:31:0,31,0:0:0:31,0:1098,0:-99.129,-9.33193,0,-99.129,-9.33193,-99.129	1/2:262:0,135,127:0:0:135,127:4790,4522:-759.181,-368.918,-328.279,-390.618,0,-352.388	1/1:257:0,249,8:0:0:249,8:8819,273:-793.355,-74.9565,0,-771.205,-52.4645,-768.797	1/1:239:0,239,0:0:0:239,0:8451,0:-760.595,-71.9462,0,-760.595,-71.9462,-760.595	1/2:10:0,4,6:0:0:4,6:131,216:-28.5525,-17.9843,-16.7802,-10.9085,0,-9.10233	1/1:25:0,25,0:0:0:25,0:892,0:-80.5991,-7.52575,0,-80.5991,-7.52575,-80.5991	1/1:10:0,10,0:0:0:10,0:339,0:-30.8366,-3.0103,0,-30.8366,-3.0103,-30.8366	1/2:11:0,9,2:0:0:9,2:303,68:-30.4024,-5.85565,-3.14638,-24.8861,0,-24.284	1/2:12:0,5,7:0:0:5,7:169,252:-34.6111,-20.9217,-19.4166,-14.0364,0,-11.9292	1/2:162:0,91,71:0:0:91,71:3223,2556:-471.457,-208.916,-181.523,-262.898,0,-241.525	1/2:207:0,116,91:0:0:116,91:4064,3236:-594.741,-264.066,-229.147,-331.028,0,-303.635	1/2:56:0,26,30:0:0:26,30:930,1080:-164.316,-88.4823,-80.6556,-76.1919,0,-67.161	.:.:.:.:.:.:.:.	1/2:173:0,91,82:0:0:91,82:3215,2921:-500.263,-238.44,-211.046,-262.178,0,-237.493	1/2:31:0,11,20:0:0:11,20:383,701:-88.536,-57.3932,-54.0819,-31.4916,0,-25.471	1/2:163:0,102,61:0:0:102,61:3597,2180:-470.973,-178.098,-147.393,-293.23,0,-274.868	1/2:117:0,68,49:0:0:68,49:2367,1756:-336.034,-143.574,-123.103,-192.815,0,-178.064	1/2:56:0,28,28:0:0:28,28:1008,1008:-164.855,-82.6075,-74.1787,-82.6075,0,-74.1787	1/1:100:0,100,0:0:0:100,0:3573,0:-321.777,-30.103,0,-321.777,-30.103,-321.777	1/1:218:0,218,0:0:0:218,0:7691,0:-692.227,-65.6245,0,-692.227,-65.6245,-692.227	1/2:235:0,127,107:0:0:127,107:4527,3813:-679.917,-310.906,-272.675,-369.116,0,-336.906	1/1:155:0,155,0:0:0:155,0:5507,0:-495.744,-46.6597,0,-495.744,-46.6597,-495.744	1/2:205:1,97,107:1:32:97,107:3421,3840:-588.932,-310.687,-284.065,-276.003,0,-246.371	1/2:189:0,113,76:0:0:113,76:4029,2720:-550.589,-222.165,-188.149,-328.781,0,-305.902	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:135:0,83,52:0:0:83,52:2956,1860:-392.948,-152.026,-127.041,-241.279,0,-225.625	1/1:42:0,42,0:0:0:42,0:1462,0:-131.87,-12.6433,0,-131.87,-12.6433,-131.87	1/2:26:0,11,15:0:0:11,15:396,540:-76.7327,-44.4211,-41.1098,-32.6714,0,-28.156	1/2:145:0,79,66:0:0:79,66:2824,2352:-422.333,-192.071,-168.29,-230.618,0,-210.75	1/2:30:0,14,16:0:0:14,16:502,563:-87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chr07	6117735	.	G	C	129467	PASS	AB=0.484727;ABP=26.8222;AC=52;AF=0.276596;AN=188;AO=5726;CIGAR=1X;DP=20968;DPB=20968;DPRA=1.19408;EPP=12436.9;EPPR=33068;GTI=0;LEN=1;MEANALT=1.1129;MQM=59.9976;MQMR=59.9893;NS=94;NUMALT=1;ODDS=9.27229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204079;QR=542749;RO=15231;RPL=2948;RPP=13.9701;RPPR=517.144;RPR=2778;RUN=1;SAF=2948;SAP=13.9701;SAR=2778;SRF=8566;SRP=518.227;SRR=6665;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:114:61,53:61:2188:53:1900:-136.96,0,-162.868	0/1:304:165,139:165:5886:139:4983:-357.104,0,-438.336	0/1:457:264,193:264:9349:193:6857:-479.631,0,-703.809	0/1:450:214,236:214:7656:236:8460:-625.937,0,-553.613	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:122:122,0:122:4352:0:0:0,-36.7257,-391.856	0/0:333:332,0:332:11828:0:0:0,-99.942,-1064.02	0/1:370:211,159:211:7551:159:5643:-396.612,0,-568.249	0/0:285:285,0:285:10129:0:0:0,-85.7935,-911.546	0/1:186:89,96:89:3180:96:3399:-250.074,0,-230.374	0/0:138:137,0:137:4866:0:0:0,-41.2411,-437.734	0/0:176:176,0:176:6232:0:0:0,-52.9813,-560.979	0/0:172:172,0:172:6139:0:0:0,-51.7772,-552.611	0/1:142:75,66:75:2639:66:2359:-169.764,0,-194.951	0/1:181:88,93:88:3117:93:3314:-243.992,0,-226.271	0/1:139:69,70:69:2450:70:2485:-182.059,0,-178.911	0/0:143:143,0:143:5081:0:0:0,-43.0473,-457.437	0/0:127:127,0:127:4543:0:0:0,-38.2308,-409.036	0/1:104:66,38:66:2349:38:1360:-91.3935,0,-180.36	0/1:464:223,241:223:7971:241:8599:-634.228,0,-577.699	0/0:395:395,0:395:14008:0:0:0,-118.907,-1260.26	0/1:165:49,116:49:1737:116:4143:-323.384,0,-106.942	0/0:205:203,1:203:7219:1:36:0,-58.1717,-646.167	0/1:227:136,91:136:4856:91:3262:-225.466,0,-368.859	0/1:202:105,97:105:3759:97:3445:-249.455,0,-277.701	0/1:634:356,278:356:12704:278:9854:-695.955,0,-952.332	0/0:702:702,0:702:25087:0:0:0,-211.323,-2257.12	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/1:474:243,231:243:8667:231:8254:-600.181,0,-637.336	0/0:349:339,10:339:12140:10:360:0,-72.3152,-1059.7	0/0:318:317,1:317:11222:1:36:0,-92.1293,-1006.27	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:353:191,162:191:6782:162:5811:-416.837,0,-504.193	0/1:297:151,146:151:5382:146:5197:-378.465,0,-395.105	0/1:100:50,50:50:1783:50:1791:-131.37,0,-130.649	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:310:147,163:147:5247:163:5836:-432.033,0,-379.049	0/1:63:30,33:30:1058:33:1179:-87.4523,0,-76.5647	0/1:386:201,185:201:7161:185:6601:-477.964,0,-528.352	0/1:170:92,78:92:3264:78:2784:-199.626,0,-242.805	0/1:121:57,63:57:2026:63:2255:-166.729,0,-146.128	0/0:252:252,0:252:8982:0:0:0,-75.8596,-808.359	0/0:315:315,0:315:11234:0:0:0,-94.8244,-1010.95	0/1:405:195,210:195:6964:210:7501:-553.217,0,-504.907	0/0:274:272,2:272:9694:2:72:0,-75.6455,-865.576	0/1:297:144,153:144:5160:153:5465:-402.572,0,-375.124	0/1:335:170,165:170:6075:165:5845:-425.319,0,-446.005	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:296:177,119:177:6334:119:4238:-292.496,0,-481.037	0/0:146:146,0:146:5168:0:0:0,-43.9504,-465.247	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	0/1:318:151,167:151:5375:167:5947:-439.614,0,-388.154	0/1:114:54,60:54:1928:60:2127:-157.38,0,-139.479	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:227:225,1:225:7983:1:36:0,-64.7943,-714.898	0/0:210:210,0:210:7490:0:0:0,-63.2163,-674.145	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	0/0:422:422,0:422:15051:0:0:0,-127.035,-1354.32	0/0:438:430,7:430:15338:7:252:0,-108.881,-1357.11	0/1:164:88,76:88:3152:76:2704:-194.235,0,-234.536	0/0:208:208,0:208:7432:0:0:0,-62.6142,-668.925	0/1:676:361,315:361:12866:315:11105:-795.852,0,-954.266	0/1:277:97,180:97:3480:180:6432:-495.581,0,-230.025	0/1:78:39,39:39:1400:39:1379:-100.928,0,-102.819	0/0:229:228,0:228:8114:0:0:0,-68.6348,-729.889	0/1:122:58,64:58:2054:64:2284:-169.096,0,-148.402	0/1:56:38,18:38:1346:18:639:-40.9806,0,-104.581	0/0:235:234,0:234:8320:0:0:0,-70.441,-748.491	0/1:179:96,83:96:3387:83:2969:-213.557,0,-251.159	0/0:470:470,0:470:16711:0:0:0,-141.484,-1503.65	0/0:417:417,0:417:14898:0:0:0,-125.53,-1340.55	0/1:141:85,56:85:3030:56:2002:-138.008,0,-230.485	0/0:289:286,3:286:10215:3:108:0,-76.9225,-909.203	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:255:254,1:254:9010:1:36:0,-73.1644,-807.284	0/1:325:161,164:161:5749:164:5838:-427.701,0,-419.691	0/1:466:256,209:256:9141:209:7467:-531.734,0,-682.326	0/1:147:71,76:71:2531:76:2708:-199.713,0,-183.789	0/1:147:74,73:74:2613:73:2607:-190.626,0,-191.167	0/0:150:150,0:150:5353:0:0:0,-45.1545,-481.903	0/1:251:135,116:135:4804:116:4117:-295.158,0,-356.958	0/0:78:78,0:78:2765:0:0:0,-23.4803,-249.091	0/0:160:160,0:160:5709:0:0:0,-48.1648,-513.928	0/0:173:173,0:173:6184:0:0:0,-52.0782,-556.659	0/1:102:59,43:59:2102:43:1540:-108.188,0,-158.743	0/1:144:75,69:75:2679:69:2448:-177.226,0,-197.999	0/1:179:73,106:73:2602:106:3782:-286.694,0,-180.543	0/0:299:297,2:297:10560:2:72:0,-83.1712,-943.48	0/0:233:232,1:232:8261:1:36:0,-66.5417,-739.906
chr07	6223500	.	ACTC	CCTC,CCTT	85344	PASS	AB=0.465068,0.530798;ABP=28.6488,22.9396;AC=134,54;AF=0.712766,0.287234;AN=188;AO=2741,1288;CIGAR=1X3M,1X2M1X;DP=4045;DPB=4045;DPRA=0,1.08059;EPP=5911.67,2773.87;EPPR=0;GTI=2;LEN=1,4;MEANALT=1.7766,2.19298;MQM=59.973,59.6126;MQMR=0;NS=94;NUMALT=2;ODDS=0.235701;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=97956,45596;QR=0;RO=0;RPL=2736,1285;RPP=5911.67,2773.87;RPPR=0;RPR=5,3;RUN=1,1;SAF=0,0;SAP=5955.02,2799.87;SAR=2741,1288;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:55:0,26,29:0:0:26,29:936,1019:-159.659,-83.2907,-75.4639,-76.7245,0,-67.9946	1/2:25:0,5,20:0:0:5,20:180,706:-72.5239,-57.8354,-56.3302,-15.0469,0,-9.02631	1/2:101:0,45,55:0:0:45,55:1616,1942:-290.012,-158.184,-144.638,-131.883,0,-115.326	1/2:74:0,39,35:0:0:39,35:1404,1250:-216.825,-102.264,-90.5238,-114.919,0,-104.383	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:46:0,46,0:0:0:46,0:1648,0:-148.609,-13.8474,0,-148.609,-13.8474,-148.609	1/2:67:0,28,39:0:0:28,39:1008,1385:-195.441,-113.191,-104.762,-82.6075,0,-70.8673	1/1:47:0,47,0:0:0:47,0:1658,0:-149.505,-14.1484,0,-149.505,-14.1484,-149.505	1/2:32:0,25,7:0:0:25,7:900,246:-93.8141,-20.372,-12.8462,-73.7953,0,-71.6881	1/1:37:0,37,0:0:0:37,0:1324,0:-119.462,-11.1381,0,-119.462,-11.1381,-119.462	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/1:37:0,37,0:0:0:37,0:1324,0:-119.462,-11.1381,0,-119.462,-11.1381,-119.462	1/2:21:0,15,6:0:0:15,6:540,215:-61.9554,-17.893,-13.3775,-44.4211,0,-42.6149	1/2:21:0,12,9:0:0:12,9:428,323:-61.5898,-26.7011,-23.0887,-35.2464,0,-32.5372	1/2:28:0,12,16:0:0:12,16:428,553:-80.041,-45.1459,-41.5336,-35.2464,0,-30.43	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/2:11:0,5,6:0:0:5,6:180,216:-32.6714,-17.9843,-16.4792,-15.0469,0,-13.2407	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/2:52:0,24,28:0:0:24,28:860,988:-150.946,-80.8045,-73.5798,-70.4971,0,-62.0683	1/1:56:0,56,0:0:0:56,0:2012,0:-181.353,-16.8577,0,-181.353,-16.8577,-181.353	1/2:59:0,19,40:0:0:19,40:675,1417:-170.757,-115.755,-110.035,-55.3574,0,-43.3162	1/1:50:0,50,0:0:0:50,0:1779,0:-160.391,-15.0515,0,-160.391,-15.0515,-160.391	1/2:31:0,20,11:0:0:20,11:701,396:-89.7061,-32.6714,-26.6508,-57.3911,0,-54.0798	1/2:57:0,19,38:0:0:19,38:657,1341:-162.904,-109.522,-103.802,-53.7303,0,-42.2912	1/2:144:0,71,73:0:0:71,73:2529,2556:-414.436,-208.302,-186.929,-206.487,0,-184.512	1/1:124:0,124,0:0:0:124,0:4432,0:-399.045,-37.3277,0,-399.045,-37.3277,-399.045	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:98:0,40,58:0:0:40,58:1436,2080:-287.126,-169.988,-157.947,-117.496,0,-100.037	1/2:38:0,34,4:0:0:34,4:1220,143:-111.532,-12.0173,-1.7823,-99.8718,0,-98.6677	1/1:49:0,47,1:0:0:47,1:1677,36:-150.856,-14.1484,0,-147.918,-11.2107,-147.617	1/2:5:0,4,1:0:0:4,1:140,36:-14.6799,-3.29724,-2.09312,-11.7405,0,-11.4394	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:8:0,6,2:0:0:6,2:216,72:-23.8592,-6.23466,-4.42848,-17.9843,0,-17.3823	1/2:68:0,36,31:0:0:36,31:1288,1092:-193.843,-88.8134,-77.9763,-105.025,0,-95.693	1/2:86:0,42,44:0:0:42,44:1504,1547:-248.925,-126.268,-113.625,-123.011,0,-109.766	1/2:11:0,6,5:0:0:6,5:212,163:-30.7652,-13.4849,-11.6787,-17.6186,0,-16.1135	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:39:0,11,28:0:0:11,28:392,980:-112.025,-80.0704,-76.759,-32.3087,0,-23.8799	1/2:19:0,6,13:0:0:6,13:216,467:-56.0806,-38.4558,-36.6496,-17.9843,0,-14.0709	1/2:91:0,38,52:0:0:38,52:1364,1839:-261.008,-149.743,-138.304,-111.262,0,-95.6082	1/2:12:0,7,5:0:0:7,5:252,172:-34.866,-14.2945,-12.1873,-20.9217,0,-19.4166	1/2:20:0,7,12:0:0:7,12:252,430:-55.6755,-35.1117,-33.0045,-20.6056,0,-16.9932	1/1:75:0,74,0:0:0:74,0:2630,0:-236.686,-22.2762,0,-236.686,-22.2762,-236.686	1/1:46:0,46,0:0:0:46,0:1644,0:-148.249,-13.8474,0,-148.249,-13.8474,-148.249	1/2:88:0,38,49:0:0:38,49:1368,1723:-251.865,-140.239,-128.8,-111.622,0,-96.8716	1/1:44:0,44,0:0:0:44,0:1568,0:-141.412,-13.2453,0,-141.412,-13.2453,-141.412	1/2:52:0,19,33:0:0:19,33:678,1170:-150.669,-95.666,-89.9465,-55.3577,0,-45.4237	1/2:87:0,50,37:0:0:50,37:1781,1306:-251.854,-106.703,-91.6515,-145.506,0,-134.367	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:84:0,36,47:0:0:36,47:1280,1675:-240.827,-136.518,-125.681,-104.305,0,-90.1567	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:11:0,5,6:0:0:5,6:180,210:-32.1271,-17.4355,-15.9304,-15.0469,0,-13.2407	1/2:44:0,14,29:0:0:14,29:500,1003:-122.268,-81.5001,-77.2856,-40.7721,0,-32.0422	1/2:41:0,24,17:0:0:24,17:849,606:-118.897,-49.7494,-42.5247,-69.5031,0,-64.3856	1/2:5:0,2,3:0:0:2,3:72,107:-14.9486,-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chr07	6546618	.	A	G	158350	PASS	AB=0.613341;ABP=389.414;AC=142;AF=0.755319;AN=188;AO=7349;CIGAR=1X;DP=8709;DPB=8709;DPRA=0;EPP=15961.2;EPPR=2906.27;GTI=5;LEN=1;MEANALT=1.18085;MQM=59.9858;MQMR=59.9656;NS=94;NUMALT=1;ODDS=3.57163;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262930;QR=47981;RO=1337;RPL=0;RPP=15961.2;RPPR=2906.27;RPR=7349;RUN=1;SAF=7349;SAP=15961.2;SAR=0;SRF=1337;SRP=2906.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:8,18:8:288:18:644:-50.1857,0,-18.1499	0/1:40:7,32:7:252:32:1152:-91.9822,0,-11.0121	0/1:131:41,90:41:1464:90:3215:-250.134,0,-92.6211	0/1:158:62,96:62:2228:96:3440:-262.25,0,-153.221	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:89:0,89:0:0:89:3176:-286.065,-26.7917,0	0/1:109:34,74:34:1224:74:2629:-204.079,0,-77.6882	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:73:32,41:32:1148:41:1464:-110.081,0,-81.6546	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:62:29,33:29:1044:33:1184:-88.2045,0,-75.6109	0/1:47:29,18:29:1044:18:648:-44.5035,0,-80.1264	0/1:53:22,31:22:792:31:1103:-83.5946,0,-55.6511	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:128:40,88:40:1421:88:3164:-246.452,0,-89.6536	1/1:104:0,104:0:0:104:3740:-336.799,-31.3071,0	0/1:73:27,46:27:957:46:1656:-127.353,0,-64.4668	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	0/1:27:6,21:6:212:21:748:-59.5175,0,-11.297	0/1:21:3,18:3:108:18:644:-51.969,0,-3.75354	0/1:185:73,112:73:2616:112:4009:-305.307,0,-179.997	1/1:130:0,130:0:0:130:4640:-417.762,-39.1339,0	1/1:18:0,17:0:0:17:612:-55.127,-5.11751,0	0/1:164:73,90:73:2624:90:3224:-240.954,0,-186.979	1/1:169:2,167:2:72:167:5949:-528.682,-44.0373,0	1/1:59:0,58:0:0:58:2084:-187.482,-17.4597,0	1/1:153:0,153:0:0:153:5481:-493.415,-46.0576,0	1/1:321:1,319:1:36:319:11377:-1020.25,-93.0523,0	1/1:252:0,251:0:0:251:8989:-808.619,-75.5585,0	1/1:151:0,151:0:0:151:5396:-485.77,-45.4555,0	1/1:105:1,104:1:36:104:3732:-332.48,-28.0099,0	0/1:104:53,51:53:1893:51:1832:-133.854,0,-139.339	0/1:100:36,64:36:1296:64:2265:-174.008,0,-86.8409	0/1:35:16,19:16:576:19:680:-50.9931,0,-41.6389	1/1:205:1,203:1:36:203:7253:-649.216,-58.1717,0	0/1:97:30,67:30:1080:67:2408:-187.776,0,-68.3133	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/1:123:23,99:23:805:99:3545:-282.167,0,-35.6824	0/1:37:18,19:18:648:19:675:-49.9388,0,-47.5138	0/1:40:23,17:23:828:17:608:-43.0062,0,-62.8029	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	1/1:131:0,130:0:0:130:4657:-418.929,-39.1339,0	0/1:105:34,69:34:1224:69:2472:-191.398,0,-79.1305	1/1:71:0,71:0:0:71:2525:-227.5,-21.3731,0	0/1:83:44,39:44:1584:39:1404:-101.674,0,-117.866	0/1:75:32,43:32:1148:43:1548:-117.036,0,-81.0526	1/1:403:0,403:0:0:403:14437:-1299.08,-121.315,0	0/1:114:41,73:41:1472:73:2597:-199.66,0,-98.4505	1/1:111:0,110:0:0:110:3933:-353.801,-33.1133,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:120:44,76:44:1584:76:2728:-209.639,0,-106.728	0/1:19:8,11:8:284:11:381:-28.9011,0,-20.1838	1/1:194:0,194:0:0:194:6941:-624.754,-58.3998,0	1/1:117:0,117:0:0:117:4185:-376.83,-35.2205,0	1/1:99:0,99:0:0:99:3545:-319.257,-29.802,0	1/1:43:0,43:0:0:43:1535:-138.443,-12.9443,0	1/1:194:4,190:4:144:190:6790:-597.856,-45.0862,0	1/1:207:1,206:1:36:206:7355:-658.397,-58.7149,0	1/1:137:1,136:1:36:136:4886:-436.292,-37.6428,0	0/1:45:18,27:18:648:27:968:-73.891,0,-45.1055	1/1:95:0,95:0:0:95:3347:-301.446,-28.5979,0	0/1:147:55,90:55:1976:90:3213:-245.497,0,-134.218	0/1:109:50,59:50:1785:59:2120:-158.256,0,-128.118	0/1:29:9,20:9:324:20:720:-56.3989,0,-20.776	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:25:9,13:9:324:13:464:-35.1205,0,-22.5279	0/1:32:5,27:5:180:27:972:-78.1649,0,-6.9191	1/1:93:0,93:0:0:93:3325:-299.466,-27.9958,0	0/1:68:34,34:34:1220:34:1197:-87.5634,0,-89.6368	1/1:163:0,163:0:0:163:5788:-521.019,-49.0679,0	1/1:113:0,113:0:0:113:4052:-364.867,-34.0164,0	0/1:96:17,79:17:612:79:2844:-227.298,0,-26.5146	1/1:104:1,103:1:36:103:3684:-328.165,-27.7088,0	1/1:124:0,124:0:0:124:4426:-398.511,-37.3277,0	1/1:78:0,78:0:0:78:2788:-251.161,-23.4803,0	0/1:118:47,71:47:1692:71:2540:-193.33,0,-116.855	0/1:86:34,52:34:1224:52:1864:-142.151,0,-84.5785	0/1:47:29,18:29:1044:18:648:-44.5035,0,-80.1264	0/1:59:32,27:32:1152:27:972:-70.0371,0,-86.2294	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:79:33,46:33:1184:46:1647:-124.736,0,-83.0869	1/1:21:0,20:0:0:20:720:-64.7692,-6.0206,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:59:0,59:0:0:59:2114:-190.529,-17.7608,0	0/1:26:8,18:8:288:18:648:-50.8251,0,-18.4406	0/1:71:23,48:23:828:48:1724:-134.072,0,-53.471	0/1:41:21,20:21:756:20:720:-52.7865,0,-56.025	1/1:194:0,193:0:0:193:6924:-622.847,-58.0988,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0
chr07	6546623	.	A	T	18445.1	PASS	AB=0.378028;ABP=451.153;AC=46;AF=0.244681;AN=188;AO=1318;CIGAR=1X;DP=8769;DPB=8769;DPRA=0.721708;EPP=2865.01;EPPR=16176.1;GTI=5;LEN=1;MEANALT=1.01923;MQM=59.9712;MQMR=59.9287;NS=94;NUMALT=1;ODDS=2.78964;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46976;QR=267124;RO=7448;RPL=0;RPP=2865.01;RPPR=16176.1;RPR=1318;RUN=1;SAF=1318;SAP=2865.01;SAR=0;SRF=7448;SRP=16176.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:21,8:21:756:8:276:-16.4448,0,-57.0597	0/1:41:33,8:33:1184:8:284:-13.5611,0,-93.6685	0/1:132:91,41:91:3264:41:1445:-90.6079,0,-254.236	0/1:158:96,62:96:3452:62:2212:-151.782,0,-263.329	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:91:91,0:91:3276:0:0:0,-27.3937,-295.059	0/1:108:76,32:76:2736:32:1128:-69.317,0,-213.115	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:73:41,32:41:1464:32:1144:-81.2943,0,-110.081	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/0:46:45,1:45:1620:1:21:0,-11.7474,-143.99	0/1:60:33,27:33:1184:27:968:-69.3756,0,-88.8065	0/1:47:19,28:19:680:28:1000:-76.167,0,-47.3808	0/1:53:31,22:31:1116:22:792:-55.6511,0,-84.4262	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	0/1:131:91,40:91:3272:40:1432:-89.7427,0,-255.264	0/0:106:105,1:105:3768:1:36:0,-28.3109,-335.72	0/1:75:48,27:48:1720:27:968:-64.8039,0,-132.508	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:27:21,6:21:756:6:216:-11.6627,0,-60.2394	0/1:21:18,3:18:644:3:108:-3.75354,0,-51.969	0/1:187:115,72:115:4105:72:2564:-174.718,0,-313.342	0/0:133:133,0:133:4753:0:0:0,-40.037,-427.927	0/0:18:18,0:18:648:0:0:0,-5.41854,-57.9481	0/1:167:94,73:94:3376:73:2576:-181.817,0,-253.783	0/0:171:169,2:169:6018:2:72:0,-44.6394,-534.885	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.448	0/0:151:151,0:151:5428:0:0:0,-45.4555,-488.647	0/0:326:326,0:326:11697:0:0:0,-98.1358,-1051.89	0/0:254:254,0:254:9102:0:0:0,-76.4616,-819.149	0/0:151:151,0:151:5420:0:0:0,-45.4555,-487.928	0/0:107:106,1:106:3804:1:36:0,-28.6119,-338.957	0/1:104:51,53:51:1836:53:1904:-140.331,0,-134.214	0/1:96:63,33:63:2260:33:1184:-77.9694,0,-174.764	0/1:35:18,17:18:648:17:611:-44.7871,0,-48.1158	0/0:204:204,0:204:7309:0:0:0,-61.4101,-657.849	0/1:96:66,30:66:2368:30:1072:-67.8936,0,-184.479	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:122:100,22:100:3581:22:780:-33.7974,0,-285.769	0/1:38:19,19:19:684:19:684:-50.4512,0,-50.4512	0/1:40:17,23:17:612:23:828:-62.8029,0,-43.3676	0/0:69:69,0:69:2480:0:0:0,-20.7711,-222.935	0/0:131:131,0:131:4681:0:0:0,-39.4349,-421.445	0/1:106:71,35:71:2552:35:1252:-81.0759,0,-197.46	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:83:39,44:39:1404:44:1565:-116.155,0,-101.674	0/1:72:42,30:42:1504:30:1068:-74.7579,0,-113.98	0/0:405:405,0:405:14564:0:0:0,-121.917,-1310.49	0/1:113:73,40:73:2616:40:1428:-94.8011,0,-201.671	0/0:110:110,0:110:3925:0:0:0,-33.1133,-353.442	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:124:81,43:81:2916:43:1523:-100.035,0,-225.346	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	0/0:193:193,0:193:6917:0:0:0,-58.0988,-622.593	0/0:119:119,0:119:4257:0:0:0,-35.8226,-383.307	0/0:100:100,0:100:3600:0:0:0,-30.103,-324.205	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:195:195,0:195:7012:0:0:0,-58.7008,-631.139	0/0:213:213,0:213:7611:0:0:0,-64.1194,-685.024	0/0:136:135,1:135:4848:1:36:0,-37.3418,-432.874	0/1:45:27,18:27:972:18:644:-44.7442,0,-74.2516	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:147:93,54:93:3344:54:1928:-129.545,0,-254.83	0/1:108:59,49:59:2101:49:1744:-124.733,0,-156.846	0/1:29:20,9:20:720:9:324:-20.776,0,-56.3989	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:24:16,8:16:576:8:288:-19.0427,0,-44.785	0/1:32:27,5:27:972:5:180:-6.91911,0,-78.1649	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:68:34,34:34:1224:34:1208:-88.556,0,-89.997	0/0:164:164,0:164:5865:0:0:0,-49.3689,-527.903	0/0:115:115,0:115:4121:0:0:0,-34.6184,-371.072	0/1:97:80,17:80:2857:17:598:-24.9476,0,-228.166	0/0:104:103,1:103:3696:1:36:0,-27.7088,-329.243	0/0:127:127,0:127:4572:0:0:0,-38.2308,-411.643	0/0:80:78,0:78:2792:0:0:0,-23.4803,-251.161	0/1:121:73,48:73:2612:48:1696:-116.493,0,-198.903	0/1:87:53,34:53:1900:34:1204:-82.4762,0,-145.088	0/1:46:17,29:17:612:29:1036:-79.7065,0,-41.5661	0/1:59:27,32:27:972:32:1152:-86.2294,0,-70.0371	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:79:45,33:45:1620:33:1180:-82.6679,0,-122.25	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3649	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:26:18,8:18:648:8:288:-18.4406,0,-50.8251	0/1:71:48,23:48:1728:23:825:-53.2005,0,-134.432	0/1:40:20,20:20:720:20:716:-52.7265,0,-53.0876	0/0:198:198,0:198:7089:0:0:0,-59.6039,-638.05	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.956
chr07	6547883	.	AG	TT,AT	122937	PASS	AB=0.495288,0.504157;ABP=3.70604,3.55196;AC=135,53;AF=0.718085,0.281915;AN=188;AO=4056,1826;CIGAR=2X,1M1X;DP=5888;DPB=5888;DPRA=0,1.30991;EPP=8810.5,3968.12;EPPR=0;GTI=2;LEN=2,1;MEANALT=1.68085,2.03448;MQM=59.6198,59.9584;MQMR=0;NS=94;NUMALT=2;ODDS=1.27761;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=143314,65285;QR=0;RO=0;RPL=4056,1826;RPP=8810.5,3968.12;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8810.5,3968.12;SAR=4056,1826;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,15,12:0:0:15,12:529,428:-78.3078,-35.2382,-30.7228,-43.4243,0,-39.8119	1/2:99:0,47,52:0:0:47,52:1644,1849:-284.773,-151.034,-136.886,-134.091,0,-118.438	1/2:194:0,99,95:0:0:99,95:3460,3404:-559.408,-277.977,-248.175,-281.785,0,-253.187	1/2:156:0,77,79:0:0:77,79:2737,2836:-454.719,-231.694,-208.515,-223.382,0,-199.601	1/1:26:0,26,0:0:0:26,0:914,0:-82.5707,-7.82678,0,-82.5707,-7.82678,-82.5707	1/1:46:0,45,0:0:0:45,0:1597,0:-143.521,-13.5464,0,-143.521,-13.5464,-143.521	1/1:52:0,52,0:0:0:52,0:1839,0:-165.742,-15.6536,0,-165.742,-15.6536,-165.742	1/2:101:0,55,46:0:0:55,46:1943,1652:-293.137,-135.121,-118.564,-158.372,0,-144.525	1/1:35:0,35,0:0:0:35,0:1254,0:-113.124,-10.5361,0,-113.124,-10.5361,-113.124	1/2:81:0,35,46:0:0:35,46:1229,1644:-234.374,-134.401,-123.865,-100.327,0,-86.4792	1/1:55:0,55,0:0:0:55,0:1939,0:-174.778,-16.5567,0,-174.778,-16.5567,-174.778	1/1:57:0,56,1:0:0:56,1:2004,36:-180.257,-16.8577,0,-177.319,-13.5604,-177.018	1/1:54:0,54,0:0:0:54,0:1913,0:-172.437,-16.2556,0,-172.437,-16.2556,-172.437	1/2:64:0,29,35:0:0:29,35:1029,1252:-185.786,-101.958,-93.2282,-84.1831,0,-73.6471	1/2:44:0,17,27:0:0:17,27:608,972:-129.242,-79.6701,-74.5526,-49.93,0,-41.8022	1/2:46:0,26,20:0:0:26,20:936,720:-135.476,-59.1082,-51.2814,-76.7281,0,-70.7075	1/1:83:0,83,0:0:0:83,0:2904,0:-261.586,-24.9855,0,-261.586,-24.9855,-261.586	1/1:72:0,71,0:0:0:71,0:2504,0:-225.046,-21.3731,0,-225.046,-21.3731,-225.046	1/2:36:0,12,23:0:0:12,23:400,824:-99.5667,-67.2007,-63.5884,-32.3505,0,-25.4268	1/2:43:0,24,19:0:0:24,19:849,680:-124.945,-55.8014,-48.5767,-69.4995,0,-63.7799	1/1:103:0,103,0:0:0:103,0:3595,0:-323.72,-31.0061,0,-323.72,-31.0061,-323.72	1/2:18:0,4,14:0:0:4,14:144,489:-51.8765,-40.1245,-38.9204,-12.1095,0,-7.89508	1/1:45:0,42,3:0:0:42,3:1502,108:-135.113,-12.6433,0,-126.3,-3.47118,-125.397	1/2:54:0,29,25:0:0:29,25:1010,896:-155.551,-73.4346,-64.7047,-82.4704,0,-74.9446	1/2:32:0,20,12:0:0:20,12:704,432:-92.8988,-35.6088,-29.5882,-57.6468,0,-54.0344	1/2:217:0,123,94:0:0:123,94:4304,3361:-623.234,-274.408,-237.381,-349.179,0,-320.882	1/1:120:0,119,1:0:0:119,1:4229,36:-380.42,-35.8226,0,-377.482,-32.5253,-377.181	1/1:30:0,29,0:0:0:29,0:1019,0:-91.656,-8.72987,0,-91.656,-8.72987,-91.656	1/2:143:0,60,83:0:0:60,83:2152,2984:-419.175,-243.806,-225.744,-175.727,0,-150.742	1/2:61:0,54,7:0:0:54,7:1879,248:-172.7,-20.557,-4.30136,-152.496,0,-150.389	1/1:82:0,82,0:0:0:82,0:2880,0:-259.271,-24.6845,0,-259.271,-24.6845,-259.271	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/1:9:0,9,0:0:0:9,0:322,0:-29.3196,-2.70927,0,-29.3196,-2.70927,-29.3196	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/2:4:0,2,2:0:0:2,2:64,72:-11.3708,-6.23466,-5.6326,-5.47604,0,-4.87398	1/2:136:0,68,68:0:0:68,68:2430,2444:-397.869,-199.745,-179.275,-198.483,0,-178.013	1/2:57:0,33,24:0:0:33,24:1176,860:-166.344,-70.4971,-60.5631,-96.2042,0,-88.9795	1/2:65:0,39,26:0:0:39,26:1400,930:-190.384,-76.1919,-64.4517,-114.55,0,-106.724	1/1:4:0,4,0:0:0:4,0:136,0:-12.465,-1.20412,0,-12.465,-1.20412,-12.465	1/2:92:0,36,56:0:0:36,56:1292,2008:-269.506,-164.118,-153.281,-105.747,0,-88.8892	1/2:45:0,27,18:0:0:27,18:950,644:-130.202,-52.8721,-44.7442,-77.6848,0,-72.2663	1/2:61:0,25,36:0:0:25,36:890,1281:-177.275,-104.754,-97.2284,-72.8766,0,-62.0395	1/2:56:0,29,27:0:0:29,27:1015,972:-162.245,-79.6701,-70.9402,-82.9299,0,-74.8021	1/2:41:0,18,23:0:0:18,23:638,828:-119.893,-67.9204,-62.5019,-52.3297,0,-45.406	1/1:45:0,45,0:0:0:45,0:1567,0:-141.251,-13.5464,0,-141.251,-13.5464,-141.251	1/1:84:0,83,0:0:0:83,0:2952,0:-265.255,-24.9855,0,-265.255,-24.9855,-265.255	1/2:97:0,46,51:0:0:46,51:1645,1795:-280.61,-146.477,-132.629,-134.488,0,-119.135	1/1:40:0,40,0:0:0:40,0:1430,0:-128.995,-12.0412,0,-128.995,-12.0412,-128.995	1/2:115:0,51,64:0:0:51,64:1772,2295:-331.589,-187.544,-172.192,-144.397,0,-125.131	1/2:55:0,29,26:0:0:29,26:1031,915:-158.858,-74.8394,-66.1096,-84.3725,0,-76.5457	1/1:5:0,5,0:0:0:5,0:178,0:-16.3686,-1.50515,0,-16.3686,-1.50515,-16.3686	1/2:89:0,47,42:0:0:47,42:1666,1511:-259.348,-123.641,-109.493,-136.064,0,-123.421	1/1:22:0,22,0:0:0:22,0:774,0:-69.9791,-6.62266,0,-69.9791,-6.62266,-69.9791	1/2:6:0,3,3:0:0:3,3:108,108:-17.9834,-9.17208,-8.26899,-9.17114,0,-8.26805	1/2:117:0,63,54:0:0:63,54:2244,1932:-340.797,-157.9,-138.936,-183.254,0,-166.998	1/2:38:0,22,15:0:0:22,15:779,536:-107.145,-43.6997,-37.077,-63.4419,0,-58.9265	1/2:5:0,2,3:0:0: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chr07	6851504	.	ACT	ACC	57981.8	PASS	AB=0.473097;ABP=18.7836;AC=135;AF=0.725806;AN=186;AO=2962;CIGAR=2M1X;DP=4299;DPB=4299.33;DPRA=0;EPP=6417.55;EPPR=2851.98;GTI=0;LEN=1;MEANALT=1.24731;MQM=59.9865;MQMR=60;NS=93;NUMALT=1;ODDS=0.523802;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=18;PRO=0.5;QA=103062;QR=45482;RO=1312;RPL=2960;RPP=6417.55;RPPR=2851.98;RPR=2;RUN=1;SAF=2962;SAP=6434.91;SAR=0;SRF=1312;SRP=2851.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:7,9:7:230:9:320:-24.3259,0,-16.2048	0/1:34:21,13:21:712:13:436:-29.3236,0,-54.1583	0/1:62:24,38:24:824:38:1304:-98.9921,0,-55.8104	0/1:63:32,31:32:1104:31:1066:-77.2781,0,-80.6989	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:20:0,19:0:0:19:684:-61.6443,-5.71957,0	1/1:58:0,57:0:0:57:1973:-177.521,-17.1587,0	0/1:48:21,27:21:715:27:955:-71.8154,0,-50.216	1/1:29:0,29:0:0:29:992:-89.5863,-8.72987,0	0/1:39:27,12:27:934:12:428:-27.1186,0,-72.6312	1/1:34:0,33:0:0:33:1144:-102.942,-9.93399,0	1/1:60:0,60:0:0:60:2045:-184.317,-18.0618,0	1/1:47:0,47:0:0:47:1635:-147.437,-14.1484,0	0/1:55:33,22:33:1148:22:765:-52.4526,0,-87.0674	0/1:44:22,22:22:780:22:752:-54.6914,0,-57.2199	0/1:37:15,22:15:507:22:743:-56.0433,0,-34.8133	1/1:32:0,32:0:0:32:1083:-97.7685,-9.63296,0	0/1:25:18,7:18:644:7:235:-13.9522,0,-50.7651	0/1:25:11,14:11:367:14:504:-38.1723,0,-25.8258	0/1:96:41,55:41:1426:55:1895:-141.923,0,-99.735	1/1:83:0,83:0:0:83:2912:-262.314,-24.9855,0	0/1:55:38,17:38:1318:17:592:-37.0474,0,-102.362	1/1:54:0,53:0:0:53:1820:-163.765,-15.9546,0	0/1:11:4,7:4:140:7:248:-19.3529,0,-9.63346	0/1:53:28,24:28:980:24:804:-56.6537,0,-72.4984	0/1:79:52,26:52:1833:26:928:-59.9982,0,-141.41	1/1:102:0,102:0:0:102:3591:-323.396,-30.7051,0	1/1:16:0,16:0:0:16:555:-50.276,-4.81648,0	0/1:94:35,58:35:1228:58:2051:-156.552,0,-82.5152	1/1:77:0,76:0:0:76:2656:-239.033,-22.8783,0	1/1:59:0,58:0:0:58:1994:-179.417,-17.4597,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:13:0,13:0:0:13:451:-40.9198,-3.91339,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:5:4,1:4:134:1:36:-2.09312,0,-10.8854	0/1:98:56,42:56:1966:42:1441:-100.479,0,-147.713	0/1:98:41,57:41:1421:57:2014:-152.031,0,-98.6822	0/1:36:15,20:15:532:20:686:-51.2678,0,-37.4208	.:.:.:.:.:.:.:.	0/1:57:27,30:27:935:30:1023:-75.2129,0,-67.3033	0/1:22:11,11:11:383:11:396:-29.3601,0,-28.181	0/1:85:50,34:50:1752:34:1220:-84.5381,0,-132.394	0/1:29:18,11:18:628:11:388:-26.5275,0,-48.1147	0/1:35:13,22:13:468:22:727:-55.2016,0,-31.9236	1/1:48:0,48:0:0:48:1684:-151.844,-14.4494,0	1/1:44:0,44:0:0:44:1531:-138.078,-13.2453,0	0/1:87:53,32:53:1834:32:1140:-76.962,0,-139.391	1/1:46:0,46:0:0:46:1607:-144.916,-13.8474,0	0/1:41:24,16:24:844:16:572:-39.4689,0,-63.9337	0/1:108:59,48:59:1997:48:1703:-120.985,0,-147.429	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:81:41,40:41:1403:40:1376:-99.7484,0,-102.18	1/1:40:0,40:0:0:40:1419:-128.007,-12.0412,0	0/1:8:4,4:4:134:4:131:-9.70523,0,-9.98231	0/1:44:23,20:23:811:20:720:-51.8531,0,-60.0354	0/1:22:7,15:7:233:15:527:-41.1375,0,-14.6726	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:13:0,12:0:0:12:410:-36.9326,-3.61236,0	1/1:48:0,48:0:0:48:1686:-152.025,-14.4494,0	1/1:79:0,79:0:0:79:2770:-249.544,-23.7814,0	0/1:4:1,3:1:36:3:69:-5.23558,0,-2.39415	1/1:103:1,100:1:36:100:3480:-309.829,-27.1589,0	1/1:80:1,79:1:36:79:2732:-242.522,-20.4841,0	0/1:33:14,19:14:470:19:661:-49.8776,0,-32.6853	1/1:34:0,34:0:0:34:1193:-107.673,-10.235,0	0/1:73:42,31:42:1436:31:1104:-77.6954,0,-107.555	0/1:86:63,23:63:2196:23:816:-47.8731,0,-172.016	0/1:19:13,6:13:455:6:216:-14.0709,0,-35.5626	1/1:39:0,39:0:0:39:1368:-123.416,-11.7402,0	0/1:27:13,14:13:439:14:482:-35.5782,0,-31.7038	0/1:12:6,6:6:216:6:207:-15.3545,0,-16.1782	1/1:69:0,69:0:0:69:2356:-212.293,-20.7711,0	0/1:70:33,37:33:1146:37:1267:-93.2539,0,-82.3717	1/1:62:0,62:0:0:62:2102:-189.443,-18.6639,0	1/1:53:0,51:0:0:51:1796:-161.598,-15.3525,0	0/1:82:40,42:40:1355:42:1452:-106.287,0,-97.5561	1/1:50:0,50:0:0:50:1759:-158.59,-15.0515,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:38:1,37:1:28:37:1300:-114.501,-8.63941,0	0/1:28:10,18:10:337:18:644:-49.8618,0,-22.2268	0/1:86:47,39:47:1632:39:1383:-98.8795,0,-121.278	0/1:51:23,26:23:811:26:895:-65.7506,0,-58.2008	0/1:30:14,15:14:487:15:532:-39.208,0,-35.1544	1/1:22:0,22:0:0:22:762:-68.8976,-6.62266,0	0/1:69:43,26:43:1499:26:911:-61.5339,0,-114.43	1/1:23:0,23:0:0:23:797:-72.0459,-6.92369,0	1/1:43:0,42:0:0:42:1427:-128.41,-12.6433,0	1/1:37:0,37:0:0:37:1257:-113.425,-11.1381,0	0/1:18:11,7:11:392:7:243:-16.7889,0,-30.2017	0/1:88:42,46:42:1459:46:1622:-119.778,0,-105.11	0/1:38:18,20:18:615:20:688:-50.7984,0,-44.2296	1/1:43:0,43:0:0:43:1483:-133.757,-12.9443,0	1/1:42:0,42:0:0:42:1449:-130.702,-12.6433,0
chr07	6851628	.	TCTTT	ACTTT,ACTTC	97989.2	PASS	AB=0.453039,0.542472;ABP=58.4848,48.3863;AC=131,55;AF=0.704301,0.295699;AN=186;AO=3108,1593;CIGAR=1X4M,1X3M1X;DP=4721;DPB=4721;DPRA=12.0718,1.37268;EPP=6751.95,3453.49;EPPR=16.0391;GTI=2;LEN=1,5;MEANALT=1.73333,2.14286;MQM=59.9871,59.9674;MQMR=60;NS=93;NUMALT=2;ODDS=1.18286;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=110674,56113;QR=194;RO=6;RPL=0,1;RPP=6751.95,3453.49;RPPR=16.0391;RPR=3108,1592;RUN=1,1;SAF=0,2;SAP=6751.95,3444.82;SAR=3108,1591;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:15:0,9,6:0:0:9,6:324,209:-43.7881,-17.3444,-14.6351,-26.7966,0,-24.9904	1/2:40:0,24,16:0:0:24,16:864,560:-116.416,-45.9116,-38.6869,-70.8578,0,-66.0414	1/2:66:0,21,44:0:0:21,44:752,1538:-186.435,-125.106,-118.784,-61.3249,0,-48.0796	1/2:153:0,77,76:0:0:77,76:2756,2683:-443.585,-218.838,-195.658,-225.103,0,-202.224	1/1:41:0,40,1:0:0:40,1:1423,36:-128.007,-12.0412,0,-125.069,-8.74396,-124.768	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:20:0,19,1:0:0:19,1:672,36:-60.4473,-5.71957,0,-57.5096,-2.42233,-57.2086	1/2:69:0,29,40:0:0:29,40:1028,1407:-198.634,-114.884,-106.154,-84.1032,0,-72.062	1/1:55:0,55,0:0:0:55,0:1951,0:-175.865,-16.5567,0,-175.865,-16.5567,-175.865	1/2:26:0,16,10:0:0:16,10:572,348:-75.2904,-28.6449,-23.8284,-46.9969,0,-43.9866	1/1:21:0,21,0:0:0:21,0:748,0:-67.6453,-6.32163,0,-67.6453,-6.32163,-67.6453	1/1:41:0,41,0:0:0:41,0:1448,0:-130.616,-12.3422,0,-130.616,-12.3422,-130.616	1/1:55:0,55,0:0:0:55,0:1967,0:-177.304,-16.5567,0,-177.304,-16.5567,-177.304	1/2:27:0,14,13:0:0:14,13:491,465:-78.2274,-38.2748,-34.0604,-40.3067,0,-36.3933	1/2:29:0,14,14:0:0:14,14:504,497:-81.617,-40.4909,-36.2765,-41.1238,0,-36.9094	1/2:26:0,10,16:0:0:10,16:360,561:-75.3427,-45.9649,-42.9546,-29.734,0,-24.9175	1/1:17:0,17,0:0:0:17,0:600,0:-54.3292,-5.11751,0,-54.3292,-5.11751,-54.3292	1/2:13:0,3,10:0:0:3,10:108,350:-37.6407,-28.8262,-27.9231,-9.17208,0,-6.16178	1/2:8:0,3,4:0:0:3,4:108,139:-20.1766,-11.3546,-10.4515,-8.87214,0,-7.66802	1/2:68:0,22,46:0:0:22,46:784,1618:-195.966,-132.059,-125.436,-64.2613,0,-50.4139	1/1:98:0,98,0:0:0:98,0:3472,0:-312.692,-29.5009,0,-312.692,-29.5009,-312.692	1/2:148:0,40,108:0:0:40,108:1440,3785:-425.841,-308.342,-296.301,-117.857,0,-85.3453	1/1:51:0,51,0:0:0:51,0:1823,0:-164.348,-15.3525,0,-164.348,-15.3525,-164.348	1/2:66:0,37,29:0:0:37,29:1307,1000:-188.02,-81.5762,-70.4381,-106.793,0,-98.0628	1/2:36:0,9,27:0:0:9,27:316,956:-103.946,-78.2277,-75.5184,-26.0696,0,-17.9418	1/2:176:0,70,106:0:0:70,106:2512,3718:-507.661,-302.757,-281.685,-205.26,0,-173.351	1/1:79:0,79,0:0:0:79,0:2822,0:-254.219,-23.7814,0,-254.219,-23.7814,-254.219	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/2:226:0,96,130:0:0:96,130:3428,4578:-652.54,-373.06,-344.161,-279.836,0,-240.702	1/1:89:0,83,4:0:0:83,4:2927,142:-263.308,-24.9855,0,-251.738,-13.4185,-250.534	1/1:61:0,61,0:0:0:61,0:2156,0:-194.305,-18.3628,0,-194.305,-18.3628,-194.305	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:151:0,78,73:0:0:78,73:2776,2581:-436.813,-210.566,-187.086,-226.602,0,-204.627	1/2:85:0,40,44:0:0:40,44:1440,1556:-244.225,-126.725,-114.684,-117.497,0,-104.251	1/2:11:0,5,6:0:0:5,6:180,210:-32.1276,-17.436,-15.9309,-15.0469,0,-13.2407	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:58:0,31,27:0:0:31,27:1086,945:-165.6,-77.236,-67.904,-88.714,0,-80.5862	1/2:7:0,4,3:0:0:4,3:144,101:-20.2834,-8.52044,-7.31632,-12.1095,0,-11.2064	1/2:75:0,45,30:0:0:45,30:1607,1058:-217.519,-86.5002,-72.9539,-131.373,0,-122.342	1/2:33:0,20,13:0:0:20,13:712,467:-96.4841,-38.4558,-32.4352,-58.3861,0,-54.4727	1/2:35:2,13,20:2:65:13,20:468,689:-88.3286,-50.7382,-52.0693,-32.975,0,-32.1961	1/1:64:1,63,0:1:31:63,0:2248,0:-199.484,-16.1665,0,-199.785,-18.9649,-202.273	1/1:42:0,42,0:0:0:42,0:1481,0:-133.579,-12.6433,0,-133.579,-12.6433,-133.579	1/2:93:0,39,54:0:0:39,54:1376,1904:-267.425,-155.382,-143.642,-112.396,0,-96.1401	1/1:23:0,21,0:0:0:21,0:756,0:-68.0074,-6.32163,0,-68.0074,-6.32163,-68.0074	1/2:82:0,25,56:0:0:25,56:891,1973:-233.333,-160.704,-153.179,-72.7008,0,-55.8431	1/2:114:0,55,59:0:0:55,59:1968,2076:-329.832,-169.35,-152.793,-160.838,0,-143.077	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:56:0,31,25:0:0:31,25:1085,881:-160.349,-72.0829,-62.751,-88.6169,0,-81.0911	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/2:63:0,29,34:0:0:29,34:1027,1203:-181.999,-98.3402,-89.6103,-84.0123,0,-73.7773	1/2:20:0,10,10:0:0:10,10:360,344:-57.6636,-28.2815,-25.2712,-29.734,0,-26.7237	1/2:4:0,3,1:0:0:3,1:108,35:-12.0173,-3.1976,-2.29451,-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chr07	6851641	.	A	C	63978.7	PASS	AB=0.464335;ABP=34.9177;AC=131;AF=0.704301;AN=186;AO=3182;CIGAR=1X;DP=4753;DPB=4753;DPRA=12.1538;EPP=6912.64;EPPR=3392.7;GTI=2;LEN=1;MEANALT=1.02222;MQM=59.9852;MQMR=59.9822;NS=93;NUMALT=1;ODDS=1.45571;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113748;QR=56192;RO=1569;RPL=0;RPP=6912.64;RPPR=3392.7;RPR=3182;RUN=1;SAF=0;SAP=6912.64;SAR=3182;SRF=2;SRP=3392.7;SRR=1567;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:37:15,22:15:536:22:788:-60.1067,0,-37.4367	0/1:65:43,22:43:1544:22:792:-52.0387,0,-119.686	0/1:152:73,78:73:2616:78:2796:-206.065,0,-189.872	1/1:41:1,40:1:36:40:1431:-125.489,-8.74396,0	1/1:24:0,24:0:0:24:852:-76.9998,-7.22472,0	1/1:22:1,21:1:36:21:752:-64.408,-3.02439,0	0/1:68:40,28:40:1440:28:1008:-70.5663,0,-109.428	1/1:59:0,59:0:0:59:2105:-189.717,-17.7608,0	0/1:25:9,16:9:320:16:576:-44.6492,0,-21.6166	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:44:0,44:0:0:44:1557:-140.42,-13.2453,0	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	0/1:27:13,14:13:468:14:496:-36.8464,0,-34.3318	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0491	1/1:17:0,17:0:0:17:592:-53.6041,-5.11751,0	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:68:46,22:46:1637:22:792:-51.1356,0,-127.147	1/1:101:0,101:0:0:101:3601:-324.294,-30.404,0	0/1:149:108,41:108:3859:41:1468:-87.5626,0,-302.652	1/1:52:0,52:0:0:52:1864:-168.037,-15.6536,0	0/1:65:29,36:29:1027:36:1287:-96.5658,0,-73.1752	0/1:35:26,9:26:936:9:324:-18.9698,0,-74.0234	0/1:174:102,72:102:3649:72:2562:-178.45,0,-275.963	1/1:83:0,83:0:0:83:2961:-266.722,-24.9855,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:226:128,98:128:4577:98:3512:-248.257,0,-344.061	1/1:90:5,85:5:176:85:3037:-257.374,-10.9077,0	1/1:61:1,60:1:36:60:2138:-189.089,-14.7646,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:150:69,80:69:2480:80:2872:-213.641,0,-178.378	0/1:86:44,42:44:1576:42:1489:-108.414,0,-116.243	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:57:27,30:27:968:30:1080:-80.3545,0,-70.2787	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:77:29,48:29:1040:48:1711:-131.096,0,-70.7351	0/1:34:13,21:13:468:21:707:-53.7043,0,-32.2246	0/1:35:19,16:19:684:16:563:-40.4631,0,-51.3543	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:42:0,42:0:0:42:1512:-136.366,-12.6433,0	0/1:94:53,41:53:1900:41:1472:-104.479,0,-142.981	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:81:55,26:55:1968:26:936:-60.1745,0,-153.012	0/1:114:59,55:59:2108:55:1976:-143.796,0,-155.672	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:58:25,33:25:900:33:1180:-89.045,0,-63.8613	1/1:29:0,29:0:0:29:1031:-93.1026,-8.72987,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:63:34,29:34:1211:29:1044:-75.3099,0,-90.3306	0/1:19:9,10:9:320:10:360:-27.0247,0,-23.4228	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:55:0,55:0:0:55:1962:-176.853,-16.5567,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:156:0,156:0:0:156:5562:-500.701,-46.9607,0	1/1:134:3,131:3:108:131:4712:-414.162,-30.2629,0	0/1:42:27,15:27:972:15:540:-36.2933,0,-75.1546	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:116:54,62:54:1944:62:2211:-164.334,0,-140.317	0/1:87:65,22:65:2311:22:788:-45.0552,0,-182.061	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	0/1:22:10,12:10:360:12:428:-32.2358,0,-26.1216	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	0/1:54:35,19:35:1260:19:676:-44.9111,0,-97.4499	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	1/1:68:0,68:0:0:68:2413:-217.423,-20.47,0	0/1:52:19,33:19:684:33:1184:-91.2148,0,-46.2368	1/1:45:0,45:0:0:45:1611:-145.28,-13.5464,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:62:31,31:31:1112:31:1116:-82.0855,0,-81.7275	0/1:121:52,69:52:1849:69:2475:-186.578,0,-130.263	0/1:65:26,39:26:936:39:1389:-105.741,0,-64.9925	0/1:33:16,17:16:576:17:608:-45.118,0,-42.241	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:74:36,38:36:1296:38:1359:-100.334,0,-94.6677	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:42:0,42:0:0:42:1464:-132.052,-12.6433,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:40:21,19:21:756:19:684:-49.8491,0,-56.326	0/1:33:17,16:17:612:16:576:-42.241,0,-45.4794	1/1:70:0,70:0:0:70:2496:-224.893,-21.0721,0	1/1:53:0,53:0:0:53:1885:-169.927,-15.9546,0
chr07	6851659	.	A	G	62670.2	PASS	AB=0.45961;ABP=43.7057;AC=131;AF=0.704301;AN=186;AO=3140;CIGAR=1X;DP=4717;DPB=4717;DPRA=12.0615;EPP=6786.73;EPPR=3416.57;GTI=2;LEN=1;MEANALT=1.01111;MQM=59.9863;MQMR=59.9848;NS=93;NUMALT=1;ODDS=1.77973;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111575;QR=56397;RO=1576;RPL=3136;RPP=6786.73;RPPR=3425.25;RPR=4;RUN=1;SAF=0;SAP=6821.43;SAR=3140;SRF=1;SRP=3416.57;SRR=1575;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/1:39:16,23:16:572:23:816:-62.0215,0,-40.0733	0/1:65:46,19:46:1629:19:676:-41.601,0,-127.33	0/1:154:75,79:75:2692:79:2803:-206.152,0,-196.166	1/1:41:1,40:1:36:40:1419:-124.408,-8.74396,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:22:1,21:1:36:21:744:-63.6861,-3.02439,0	0/1:69:42,27:42:1500:27:968:-66.6663,0,-114.524	1/1:61:0,61:0:0:61:2163:-194.937,-18.3628,0	0/1:26:10,16:10:352:16:572:-43.9866,0,-24.1914	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	1/1:43:0,43:0:0:43:1518:-136.912,-12.9443,0	1/1:55:0,55:0:0:55:1955:-176.225,-16.5567,0	0/1:25:14,11:14:504:11:388:-27.7316,0,-38.1723	0/1:29:14,15:14:504:15:536:-39.8449,0,-36.9682	0/1:25:16,9:16:572:9:324:-21.9801,0,-44.1574	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/1:8:5,3:5:172:3:104:-7.29457,0,-13.4097	0/1:68:46,22:46:1656:22:779:-49.962,0,-128.858	1/1:98:0,98:0:0:98:3487:-314.042,-29.5009,0	0/1:144:105,39:105:3764:39:1387:-81.7798,0,-295.611	1/1:50:0,50:0:0:50:1776:-160.121,-15.0515,0	0/1:63:28,34:28:1004:34:1216:-90.7229,0,-71.6522	0/1:35:26,9:26:918:9:320:-18.6063,0,-72.3992	0/1:177:103,74:103:3704:74:2631:-183.755,0,-280.278	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:223:127,96:127:4545:96:3406:-239.626,0,-342.085	1/1:86:5,81:5:180:81:2849:-240.094,-9.33652,0	1/1:61:0,61:0:0:61:2141:-192.957,-18.3628,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:148:70,78:70:2512:78:2768:-204.809,0,-181.779	0/1:84:44,40:44:1572:40:1432:-103.891,0,-116.485	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:54:27,27:27:964:27:968:-71.1817,0,-70.8212	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:73:28,45:28:1004:45:1604:-122.675,0,-68.7007	0/1:33:13,20:13:468:20:703:-53.6595,0,-32.5257	0/1:34:19,15:19:665:15:518:-36.7105,0,-49.9378	1/1:64:0,64:0:0:64:2272:-204.743,-19.2659,0	1/1:42:0,42:0:0:42:1483:-133.763,-12.6433,0	0/1:94:53,41:53:1908:41:1451:-102.588,0,-143.701	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:81:55,26:55:1976:26:920:-58.733,0,-153.729	0/1:114:58,56:58:2088:56:2000:-145.955,0,-153.872	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	0/1:56:25,31:25:881:31:1091:-81.6329,0,-62.7482	1/1:29:0,29:0:0:29:1023:-92.3817,-8.72987,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:62:33,29:33:1180:29:1031:-74.4388,0,-87.8442	0/1:20:10,10:10:356:10:360:-26.7237,0,-26.3606	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:57:0,57:0:0:57:2027:-182.702,-17.1587,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:154:0,154:0:0:154:5497:-494.852,-46.3586,0	1/1:133:5,128:5:180:128:4555:-393.567,-23.4849,0	0/1:43:27,16:27:972:16:572:-38.8691,0,-74.8536	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:115:53,62:53:1904:62:2224:-165.806,0,-137.019	0/1:88:65,23:65:2327:23:812:-46.9103,0,-183.199	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:22:10,12:10:360:12:428:-32.2352,0,-26.1216	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:57:0,57:0:0:57:2032:-183.152,-17.1587,0	0/1:54:36,18:36:1284:18:648:-42.3916,0,-99.6078	1/1:49:0,49:0:0:49:1722:-155.264,-14.7505,0	1/1:69:0,69:0:0:69:2455:-221.205,-20.7711,0	0/1:55:20,35:20:686:35:1244:-95.708,0,-45.4991	1/1:43:0,43:0:0:43:1520:-137.093,-12.9443,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	0/1:63:31,32:31:1082:32:1136:-83.5817,0,-78.7198	0/1:124:55,69:55:1972:69:2456:-183.967,0,-140.427	0/1:65:26,39:26:936:39:1387:-105.561,0,-64.9925	0/1:33:16,17:16:576:17:599:-44.3041,0,-42.241	1/1:34:0,34:0:0:34:1202:-108.484,-10.235,0	0/1:73:35,38:35:1256:38:1352:-100.005,0,-91.3701	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:42:0,42:0:0:42:1488:-134.215,-12.6433,0	1/1:46:0,46:0:0:46:1625:-146.539,-13.8474,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:38:20,18:20:720:18:636:-46.1289,0,-53.6896	0/1:32:16,16:16:576:16:563:-41.3662,0,-42.542	1/1:72:0,72:0:0:72:2546:-229.391,-21.6742,0	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0
chr07	6879233	.	GCGCC	GCGTC,CCGTT	104087	PASS	AB=0.460556,0.53257;ABP=44.2939,31.1584;AC=135,53;AF=0.718085,0.281915;AN=188;AO=3336,1642;CIGAR=3M1X1M,1X2M2X;DP=5011;DPB=5011;DPRA=5.37742,1.35147;EPP=7221.01,3568.57;EPPR=11.6962;GTI=3;LEN=1,5;MEANALT=1.88172,2.30357;MQM=59.9658,53.511;MQMR=60;NS=94;NUMALT=2;ODDS=0.405539;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=119272,57542;QR=131;RO=4;RPL=2,0;RPP=7229.68,3568.57;RPPR=11.6962;RPR=3334,1642;RUN=1,1;SAF=3335,1642;SAP=7238.36,3568.57;SAR=1,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,23,16:0:0:23,16:815,557:-111.857,-45.4601,-38.5364,-66.7471,0,-61.9306	1/2:72:0,35,37:0:0:35,37:1248,1299:-206.622,-104.886,-94.3495,-102.089,0,-90.9507	1/2:128:0,57,70:0:0:57,70:2048,2440:-363.643,-196.569,-179.411,-167.086,0,-146.014	1/2:95:0,46,49:0:0:46,49:1633,1693:-269.475,-136.414,-122.567,-133.409,0,-118.659	1/1:39:0,39,0:0:0:39,0:1396,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/1:50:0,50,0:0:0:50,0:1800,0:-162.274,-15.0515,0,-162.274,-15.0515,-162.274	1/2:88:0,40,47:0:0:40,47:1423,1644:-248.785,-132.814,-120.773,-115.99,0,-101.842	1/1:51:0,50,0:0:0:50,0:1796,0:-161.563,-15.0515,0,-161.563,-15.0515,-161.563	1/2:33:0,13,19:0:0:13,19:464,655:-90.9055,-53.0794,-49.166,-37.8272,0,-32.1076	1/1:42:0,42,0:0:0:42,0:1512,0:-136.375,-12.6433,0,-136.375,-12.6433,-136.375	1/1:72:0,71,0:0:0:71,0:2548,0:-229.289,-21.3731,0,-229.289,-21.3731,-229.289	1/2:58:0,33,25:0:0:33,25:1188,863:-167.087,-70.1434,-60.2094,-97.2946,0,-89.7689	1/2:37:0,22,15:0:0:22,15:784,529:-107.063,-43.1545,-36.5318,-64.2613,0,-59.7458	1/2:33:0,18,14:0:0:18,14:648,497:-93.4098,-40.5307,-35.1121,-52.9492,0,-48.7348	1/2:41:0,12,29:0:0:12,29:432,1016:-117.849,-82.5967,-78.9844,-35.6088,0,-26.879	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/2:49:0,15,34:0:0:15,34:540,1193:-140.613,-96.548,-92.0326,-44.4211,0,-34.1861	1/2:21:0,10,11:0:0:10,11:356,385:-60.6655,-31.6474,-28.6371,-29.3709,0,-26.0596	1/1:52:0,52,0:0:0:52,0:1864,0:-168.039,-15.6536,0,-168.039,-15.6536,-168.039	1/2:35:0,12,22:0:0:12,22:417,767:-96.3689,-62.4668,-58.8545,-34.0181,0,-27.3954	1/1:66:0,66,0:0:0:66,0:2372,0:-213.738,-19.868,0,-213.738,-19.868,-213.738	1/2:26:0,13,13:0:0:13,13:464,468:-76.0911,-38.2641,-34.3507,-38.1841,0,-34.2707	1/2:36:0,20,16:0:0:20,16:720,571:-105.405,-46.6538,-40.6332,-59.1082,0,-54.2917	1/2:125:0,56,69:0:0:56,69:1993,2405:-358.07,-195.635,-178.778,-162.787,0,-142.015	1/1:108:0,107,0:0:0:107,0:3832,0:-344.826,-32.2102,0,-344.826,-32.2102,-344.826	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/2:74:0,35,38:0:0:35,38:1248,1341:-210.915,-109.18,-98.6437,-101.808,0,-90.3691	1/1:70:0,69,1:0:0:69,1:2450,36:-220.393,-20.7711,0,-217.461,-17.4807,-217.16	1/1:44:1,41,0:1:36:41,0:1459,0:-128.044,-9.38483,0,-128.345,-12.3422,-131.283	1/2:10:0,7,3:0:0:7,3:248,102:-28.8121,-8.59887,-6.49166,-20.557,0,-19.6539	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:11:0,5,5:0:0:5,5:180,178:-29.1641,-14.4752,-12.9701,-14.6871,0,-13.1819	1/2:35:0,19,16:0:0:19,16:684,552:-100.872,-45.0528,-39.3332,-56.1708,0,-51.3543	1/2:106:0,55,51:0:0:55,51:1967,1754:-302.837,-142.44,-125.883,-160.748,0,-145.395	1/2:112:0,54,57:0:0:54,57:1912,2021:-319.231,-163.483,-147.228,-155.741,0,-138.582	1/2:31:0,14,17:0:0:14,17:504,594:-89.6039,-48.4748,-44.2603,-41.4837,0,-36.3662	1/2:11:0,8,3:0:0:8,3:279,108:-31.8359,-9.15289,-6.74465,-23.0393,0,-22.1362	1/2:75:0,36,39:0:0:36,39:1288,1389:-218.09,-113.06,-102.222,-105.387,0,-93.6463	1/2:25:0,10,15:0:0:10,15:356,523:-71.7177,-42.7867,-39.7764,-29.2831,0,-24.7676	1/2:115:0,48,67:0:0:48,67:1712,2356:-330.667,-191.104,-176.654,-139.916,0,-119.747	1/2:25:0,13,12:0:0:13,12:468,417:-72.3316,-34.1382,-30.2248,-38.5463,0,-34.9339	1/2:29:0,11,16:0:0:11,16:392,572:-78.4331,-46.4808,-43.1694,-31.9495,0,-27.133	1/1:79:0,78,0:0:0:78,0:2763,0:-248.55,-23.4803,0,-248.55,-23.4803,-248.55	1/1:71:0,71,0:0:0:71,0:2552,0:-229.93,-21.3731,0,-229.93,-21.3731,-229.93	1/2:101:0,44,57:0:0:44,57:1572,2022:-292.858,-164.688,-151.442,-128.526,0,-111.368	1/1:43:0,43,0:0:0:43,0:1540,0:-138.893,-12.9443,0,-138.893,-12.9443,-138.893	1/2:85:0,43,42:0:0:43,42:1548,1480:-246.312,-119.998,-107.054,-126.668,0,-114.025	1/2:31:0,10,21:0:0:10,21:360,738:-89.7666,-60.3896,-57.3793,-29.734,0,-23.4124	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:100:0,38,61:0:0:38,61:1345,2143:-283.211,-173.658,-162.219,-109.546,0,-91.1828	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/2:8:0,1,7:0:0:1,7:36,249:-23.5455,-20.6075,-20.3065,-3.29724,0,-1.19003	1/2:65:0,26,39:0:0:26,39:923,1372:-186.983,-111.776,-103.949,-75.56,0,-63.8198	1/2:26:0,16,10:0:0:16,10:576,338:-74.7296,-27.7177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chr07	6879507	.	G	A	91752.3	PASS	AB=0.493008;ABP=4.80193;AC=133;AF=0.722826;AN=184;AO=4596;CIGAR=1X;DP=6744;DPB=6744;DPRA=0;EPP=9983.1;EPPR=4636.97;GTI=2;LEN=1;MEANALT=1.02174;MQM=49.4258;MQMR=58.8663;NS=92;NUMALT=1;ODDS=0.67343;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164377;QR=76315;RO=2146;RPL=4596;RPP=9983.1;RPPR=4654.31;RPR=0;RUN=1;SAF=0;SAP=9983.1;SAR=4596;SRF=2;SRP=4645.63;SRR=2144;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:5,16:5:176:16:576:-44.4807,0,-9.82432	0/1:90:43,47:43:1518:47:1683:-123.429,0,-109.715	0/1:66:31,35:31:1100:35:1248:-91.8384,0,-79.2855	0/1:125:59,66:59:2098:66:2360:-174.498,0,-150.925	1/1:27:0,27:0:0:27:942:-84.6545,-8.12781,0	1/1:19:0,19:0:0:19:684:-61.3699,-5.71957,0	1/1:57:0,57:0:0:57:2036:-182.867,-17.1587,0	0/1:84:36,48:36:1292:48:1724:-127.033,0,-91.1306	1/1:50:0,50:0:0:50:1796:-159.92,-15.0515,0	0/1:56:32,24:32:1148:24:847:-59.5078,0,-86.3915	1/1:59:0,59:0:0:59:2115:-190.052,-17.7608,0	1/1:63:0,63:0:0:63:2256:-200.828,-18.9649,0	0/1:71:42,29:42:1504:29:1044:-70.2668,0,-114.014	0/1:88:36,52:36:1263:52:1845:-138.412,0,-86.859	0/1:70:34,36:34:1199:36:1283:-94.319,0,-87.0859	0/1:64:27,36:27:951:36:1271:-94.3123,0,-66.5072	1/1:60:0,60:0:0:60:2148:-191.477,-18.0618,0	1/1:49:0,49:0:0:49:1756:-156.581,-14.7505,0	0/1:42:17,25:17:612:25:896:-66.7251,0,-42.6783	0/1:159:68,91:68:2420:91:3235:-241.673,0,-169.902	1/1:100:0,100:0:0:100:3577:-319.86,-30.103,0	0/1:74:58,16:58:2056:16:568:-29.0015,0,-162.952	1/1:59:0,59:0:0:59:2088:-187.361,-17.7608,0	0/1:97:40,57:40:1428:57:2048:-153.866,0,-99.5382	0/1:40:17,23:17:604:23:828:-62.3971,0,-41.4542	0/1:179:95,84:95:3392:84:3003:-215.539,0,-251.47	1/1:187:0,187:0:0:187:6724:-600.353,-56.2926,0	1/1:38:0,38:0:0:38:1349:-121.041,-11.4391,0	0/1:236:118,118:118:4199:118:4215:-306.766,0,-306.868	1/1:100:2,98:2:72:98:3515:-307.979,-23.2663,0	1/1:55:1,54:1:32:54:1932:-170.175,-13.3573,0	0/1:7:5,2:5:171:2:72:-4.69245,0,-13.5611	1/1:21:0,21:0:0:21:756:-67.8793,-6.32163,0	1/1:1:0,1:0:0:1:36:-3.56681,-0.30103,0	0/1:8:3,5:3:99:5:176:-13.6602,0,-6.82745	0/1:5:2,3:2:72:3:104:-8.12695,0,-5.33073	0/1:199:115,84:115:4082:84:3004:-208.666,0,-307.381	0/1:95:47,48:47:1680:48:1703:-122.96,0,-122.7	0/1:78:50,28:50:1784:28:996:-65.1787,0,-136.1	.:.:.:.:.:.:.:.	0/1:102:48,54:48:1707:54:1944:-142.031,0,-122.875	0/1:33:13,20:13:468:20:709:-53.7409,0,-32.4692	0/1:78:50,28:50:1779:28:999:-66.2682,0,-136.706	0/1:67:33,34:33:1188:34:1212:-88.5916,0,-87.0074	0/1:56:24,32:24:843:32:1148:-86.2664,0,-59.1944	1/1:57:1,56:1:36:56:1982:-174.238,-13.5604,0	1/1:84:0,84:0:0:84:3000:-266.762,-25.2865,0	0/1:77:33,44:33:1163:44:1577:-118.291,0,-81.745	1/1:81:0,81:0:0:81:2912:-261.598,-24.3834,0	0/1:113:53,60:53:1892:60:2156:-159.242,0,-136.443	0/1:162:69,93:69:2445:93:3323:-247.812,0,-171.455	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	0/1:88:42,46:42:1504:46:1656:-121.36,0,-108.933	1/1:9:0,9:0:0:9:315:-28.5745,-2.70927,0	0/1:9:6,3:6:212:3:108:-7.2778,0,-16.7135	0/1:92:40,52:40:1402:52:1872:-140.028,0,-98.7762	0/1:32:20,12:20:712:12:423:-28.5994,0,-54.7737	0/1:2:1,1:1:36:1:36:-2.98442,0,-2.99621	1/1:9:0,9:0:0:9:324:-29.3838,-2.70927,0	1/1:51:0,51:0:0:51:1817:-162.826,-15.3525,0	1/1:113:2,111:2:72:111:3975:-348.641,-27.1797,0	.:.:.:.:.:.:.:.	1/1:102:0,102:0:0:102:3625:-325.173,-30.7051,0	1/1:132:1,131:1:36:131:4699:-418.003,-36.1377,0	0/1:116:52,64:52:1856:64:2275:-168.833,0,-132.022	1/1:41:0,41:0:0:41:1459:-131.175,-12.3422,0	0/1:82:41,41:41:1446:41:1457:-105.555,0,-105.665	0/1:49:35,14:35:1260:14:504:-30.7863,0,-98.9535	1/1:31:0,31:0:0:31:1107:-99.3911,-9.33193,0	1/1:46:0,46:0:0:46:1656:-148.081,-13.8474,0	0/1:78:42,36:42:1479:36:1288:-92.2648,0,-109.697	0/1:22:13,9:13:464:9:320:-22.3457,0,-35.4463	1/1:60:0,60:0:0:60:2152:-191.587,-18.0618,0	0/1:52:24,28:24:856:28:1008:-73.8056,0,-61.6984	1/1:71:0,71:0:0:71:2531:-226.296,-21.3731,0	1/1:112:1,111:1:36:111:3967:-352.374,-30.1171,0	0/1:139:67,72:67:2382:72:2585:-187.022,0,-172.461	1/1:60:0,60:0:0:60:2160:-191.749,-18.0618,0	1/1:3:0,3:0:0:3:108:-9.98707,-0.90309,0	1/1:94:0,94:0:0:94:3376:-301.851,-28.2968,0	0/1:81:44,37:44:1576:37:1324:-93.6953,0,-117.578	0/1:181:97,83:97:3451:83:2963:-210.626,0,-256.204	0/1:114:55,59:55:1942:59:2115:-155.405,0,-140.632	0/1:69:35,34:35:1248:34:1220:-88.8066,0,-91.8523	1/1:68:0,68:0:0:68:2431:-218.061,-20.47,0	0/1:134:77,57:77:2743:57:2044:-143.326,0,-206.695	1/1:38:0,38:0:0:38:1359:-121.627,-11.4391,0	1/1:67:0,67:0:0:67:2404:-213.736,-20.169,0	1/1:77:0,77:0:0:77:2750:-245.276,-23.1793,0	0/1:46:24,22:24:860:22:779:-56.1427,0,-63.8735	0/1:137:80,57:80:2838:57:2048:-142.065,0,-214.249	0/1:54:39,15:39:1395:15:536:-32.1675,0,-109.564	1/1:66:1,65:1:36:65:2328:-204.823,-16.2697,0	1/1:104:0,104:0:0:104:3728:-334.046,-31.3071,0
chr07	6967134	.	A	T	38808	PASS	AB=0.52404;ABP=24.8304;AC=52;AF=0.282609;AN=184;AO=2297;CIGAR=1X;DP=7811;DPB=7811;DPRA=1.18739;EPP=4990.88;EPPR=11943.9;GTI=1;LEN=1;MEANALT=1.08333;MQM=59.9604;MQMR=59.9835;NS=92;NUMALT=1;ODDS=1.9218;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81758;QR=197385;RO=5507;RPL=2297;RPP=4990.88;RPPR=11952.6;RPR=0;RUN=1;SAF=2297;SAP=4990.88;SAR=0;SRF=5506;SRP=11952.6;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:49,31:49:1756:31:1068:-72.3423,0,-134.242	0/1:124:51,73:51:1832:73:2583:-195.39,0,-127.833	0/1:98:41,57:41:1468:57:2048:-155.082,0,-102.915	0/1:137:67,70:67:2404:70:2511:-185,0,-175.375	0/0:34:33,1:33:1188:1:36:0,-6.63674,-103.63	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:171:171,0:171:6140:0:0:0,-51.4761,-552.697	0/1:113:56,57:56:1997:57:2005:-146.703,0,-145.985	0/0:113:112,1:112:3987:1:36:0,-30.4181,-355.418	0/1:76:24,52:24:860:52:1849:-143.81,0,-54.8436	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/1:58:26,32:26:936:32:1135:-84.9983,0,-67.0997	0/1:50:31,19:31:1116:19:676:-46.1165,0,-85.7002	0/1:57:28,29:28:1008:29:1036:-76.3952,0,-73.8776	0/1:47:23,24:23:819:24:845:-62.2187,0,-59.8832	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:42:18,24:18:633:24:849:-64.0846,0,-44.6518	0/1:189:87,102:87:3132:102:3641:-270.999,0,-225.21	0/0:212:212,0:212:7601:0:0:0,-63.8184,-684.124	0/1:78:26,52:26:936:52:1850:-143.298,0,-61.0791	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.694	0/1:54:32,22:32:1152:22:777:-53.9866,0,-87.7345	0/1:48:19,29:19:680:29:1044:-79.8254,0,-47.0797	0/1:265:142,123:142:5089:123:4392:-315.68,0,-378.378	0/0:217:214,2:214:7684:2:68:0,-58.9179,-685.127	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:216:97,119:97:3492:119:4219:-314.867,0,-249.467	0/0:80:76,4:76:2724:4:144:0,-10.7688,-232.085	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	.:.:.:.:.:.:.:.	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:174:89,84:89:3200:84:2951:-213.38,0,-235.783	0/1:161:92,69:92:3270:69:2466:-173.728,0,-246.051	0/1:57:26,31:26:912:31:1112:-83.2326,0,-64.7421	.:.:.:.:.:.:.:.	0/1:79:29,50:29:1044:50:1783:-136.971,0,-70.4934	0/1:29:11,18:11:396:18:636:-48.8382,0,-27.2529	0/1:95:49,46:49:1760:46:1639:-119.2,0,-130.086	0/1:77:34,43:34:1220:43:1521:-114.002,0,-86.9275	0/1:60:28,32:28:1008:32:1122:-83.2245,0,-72.9746	0/0:118:118,0:118:4235:0:0:0,-35.5215,-381.328	0/0:133:133,0:133:4748:0:0:0,-40.037,-427.477	0/1:118:51,67:51:1832:67:2366:-177.675,0,-129.639	0/0:111:110,1:110:3940:1:36:0,-29.8161,-351.194	0/1:113:59,54:59:2108:54:1920:-139.056,0,-155.973	0/1:179:80,99:80:2851:99:3531:-264.096,0,-202.944	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:97:53,44:53:1904:44:1576:-112.932,0,-142.438	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.491	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:119:55,64:55:1976:64:2300:-171.424,0,-142.292	0/1:60:30,30:30:1080:30:1072:-78.6443,0,-79.4515	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:109:106,2:106:3796:2:72:0,-26.0077,-335.014	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:113:113,0:113:4048:0:0:0,-34.0164,-364.507	0/0:184:183,1:183:6580:1:36:0,-51.7912,-588.671	0/1:53:31,22:31:1112:22:792:-55.6511,0,-84.4368	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:130:64,65:64:2296:65:2332:-170.947,0,-167.708	0/1:122:35,87:35:1248:87:3111:-243.473,0,-75.8129	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:91:90,1:90:3236:1:21:0,-25.2938,-289.361	0/1:89:41,48:41:1476:48:1716:-127.933,0,-106.345	0/1:18:3,15:3:108:15:518:-41.527,0,-4.65663	0/0:113:112,0:112:4024:0:0:0,-33.7154,-361.987	0/1:83:50,33:50:1792:33:1188:-82.2431,0,-136.577	0/0:154:154,0:154:5512:0:0:0,-46.3586,-496.196	0/0:126:126,0:126:4528:0:0:0,-37.9298,-407.685	0/1:42:20,22:20:712:22:792:-58.9624,0,-51.7634	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:99:97,1:97:3461:1:36:0,-26.2625,-308.103	0/1:103:48,55:48:1720:55:1968:-146.389,0,-124.079	0/1:135:59,76:59:2120:76:2714:-203.864,0,-150.429	0/1:94:48,46:48:1715:46:1634:-119.05,0,-126.338	0/1:48:23,25:23:824:25:896:-66.5109,0,-60.0339	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/1:131:71,60:71:2537:60:2135:-152.983,0,-189.144	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/1:23:12,11:12:432:11:383:-27.8796,0,-32.2975	0/1:53:30,23:30:1076:23:815:-57.7162,0,-81.1983	0/1:57:21,36:21:756:36:1288:-99.0649,0,-51.2085	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.941	0/0:93:92,0:92:3304:0:0:0,-27.6948,-297.218
chr07	7118105	.	T	G	88250	PASS	AB=0.434762;ABP=160.822;AC=136;AF=0.723404;AN=188;AO=4451;CIGAR=1X;DP=6887;DPB=6887;DPRA=0;EPP=9659.55;EPPR=5273.17;GTI=4;LEN=1;MEANALT=1.08511;MQM=59.9252;MQMR=59.986;NS=94;NUMALT=1;ODDS=0.841491;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158431;QR=86822;RO=2427;RPL=1;RPP=9659.55;RPPR=5273.17;RPR=4450;RUN=1;SAF=4451;SAP=9668.23;SAR=0;SRF=2427;SRP=5273.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:27,16:27:964:16:572:-38.8691,0,-74.1325	0/1:68:42,26:42:1508:26:930:-63.5486,0,-115.545	0/1:144:85,59:85:3020:59:2107:-146.55,0,-228.681	0/1:128:64,64:64:2300:64:2284:-167.29,0,-168.729	1/1:34:2,32:2:72:32:1144:-96.4328,-3.3983,0	1/1:22:0,21:0:0:21:756:-68.1517,-6.32163,0	1/1:55:0,55:0:0:55:1957:-176.401,-16.5567,0	0/1:123:93,30:93:3336:30:1055:-58.2333,0,-263.43	1/1:70:1,69:1:36:69:2468:-218.776,-17.4738,0	0/1:71:42,29:42:1504:29:1036:-72.1784,0,-114.281	1/1:97:1,96:1:36:96:3412:-303.698,-25.6016,0	1/1:110:0,110:0:0:110:3873:-348.766,-33.1133,0	0/1:74:35,39:35:1260:39:1404:-104.383,0,-91.4293	0/1:80:45,35:45:1616:35:1250:-88.7227,0,-121.648	0/1:69:31,37:31:1116:37:1315:-97.8213,0,-79.9218	0/1:68:26,42:26:927:42:1504:-115.185,0,-63.2773	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:49:0,49:0:0:49:1748:-157.558,-14.7505,0	0/1:41:17,24:17:612:24:856:-65.0189,0,-43.0712	0/1:129:83,46:83:2971:46:1641:-109.058,0,-228.789	1/1:79:0,79:0:0:79:2792:-250.743,-23.7814,0	0/1:77:53,24:53:1896:24:839:-52.6441,0,-147.739	1/1:56:0,56:0:0:56:1997:-179.996,-16.8577,0	0/1:43:18,25:18:644:25:896:-68.0161,0,-45.3463	0/1:57:35,22:35:1256:22:788:-54.0861,0,-96.1866	0/1:192:112,80:112:4008:80:2853:-199.201,0,-303.112	1/1:149:0,148:0:0:148:5291:-475.998,-44.5524,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:130:62,68:62:2228:68:2436:-180.361,0,-161.65	1/1:76:6,70:6:216:70:2508:-206.177,-3.08777,0	1/1:44:1,43:1:36:43:1531:-134.484,-9.64705,0	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:9:0,9:0:0:9:312:-28.4154,-2.70927,0	0/1:18:13,5:13:464:5:176:-10.7665,0,-36.679	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:167:77,89:77:2746:89:3160:-234.293,0,-197.051	0/1:108:72,36:72:2572:36:1288:-83.7123,0,-199.219	0/1:65:30,35:30:1071:35:1240:-92.3375,0,-77.1347	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:95:48,47:48:1720:47:1673:-122.258,0,-126.488	0/1:53:36,17:36:1292:17:612:-39.4588,0,-100.629	0/1:61:30,30:30:1076:30:1076:-78.7892,0,-78.7892	0/1:46:19,27:19:684:27:953:-72.2359,0,-48.0429	0/1:46:27,19:27:968:19:675:-47.2296,0,-73.5876	1/1:92:0,92:0:0:92:3246:-292.361,-27.6948,0	1/1:46:0,46:0:0:46:1632:-147.168,-13.8474,0	0/1:103:59,43:59:2107:43:1529:-106.837,0,-158.834	1/1:88:0,88:0:0:88:3102:-279.407,-26.4906,0	0/1:118:65,53:65:2324:53:1883:-134.225,0,-173.899	0/1:107:47,60:47:1684:60:2144:-161.018,0,-119.637	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:118:73,45:73:2611:45:1610:-109.669,0,-199.716	1/1:44:0,44:0:0:44:1557:-140.42,-13.2453,0	0/1:12:8,4:8:284:4:140:-9.33222,0,-22.291	0/1:118:67,51:67:2387:51:1819:-128.469,0,-179.566	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:64:0,64:0:0:64:2277:-205.191,-19.2659,0	1/1:121:0,121:0:0:121:4299:-387.085,-36.4246,0	0/1:10:9,1:9:316:1:36:-0.587975,0,-25.7686	1/1:120:0,120:0:0:120:4269:-384.38,-36.1236,0	1/1:105:2,103:2:72:103:3668:-323.481,-24.7714,0	0/1:52:22,30:22:788:30:1080:-81.8597,0,-55.5912	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:122:68,54:68:2435:54:1932:-137.431,0,-182.679	0/1:266:177,88:177:6321:88:3143:-202.96,0,-488.846	1/1:63:2,61:2:72:61:2170:-188.729,-12.1282,0	1/1:41:1,40:1:36:40:1432:-125.579,-8.74396,0	0/1:50:27,23:27:968:23:803:-57.5359,0,-72.3859	0/1:23:13,10:13:455:10:360:-25.8206,0,-34.3583	1/1:106:0,106:0:0:106:3733:-336.168,-31.9092,0	0/1:77:57,20:57:2036:20:720:-41.9495,0,-160.143	1/1:105:0,105:0:0:105:3726:-335.52,-31.6082,0	1/1:95:1,94:1:36:94:3340:-297.218,-24.9996,0	0/1:77:41,34:41:1472:34:1212:-86.2592,0,-109.839	1/1:93:2,91:2:72:91:3236:-284.623,-21.1591,0	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	1/1:88:1,87:1:36:87:3105:-275.948,-22.8924,0	0/1:89:60,29:60:2156:29:1035:-66.6714,0,-167.515	0/1:136:73,63:73:2620:63:2247:-161.553,0,-195.107	0/1:50:25,25:25:896:25:892:-65.5482,0,-65.9089	0/1:79:44,35:44:1572:35:1247:-88.7504,0,-117.99	1/1:38:0,38:0:0:38:1355:-122.25,-11.4391,0	0/1:108:56,52:56:1994:52:1860:-135.168,0,-147.221	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:79:0,79:0:0:79:2789:-251.249,-23.7814,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	0/1:84:50,34:50:1792:34:1224:-85.1805,0,-136.276	0/1:170:87,83:87:3112:83:2942:-213.803,0,-229.132	0/1:63:38,25:38:1329:25:872:-59.8287,0,-100.943	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:81:1,80:1:36:80:2830:-251.341,-20.7852,0
chr07	7132881	.	A	G	69100.3	PASS	AB=0.510744;ABP=5.6234;AC=135;AF=0.718085;AN=188;AO=3390;CIGAR=1X;DP=4783;DPB=4783;DPRA=0;EPP=7364.3;EPPR=3023.53;GTI=4;LEN=1;MEANALT=1.02128;MQM=59.7254;MQMR=59.9504;NS=94;NUMALT=1;ODDS=0.144179;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120842;QR=49636;RO=1391;RPL=3390;RPP=7364.3;RPPR=3023.53;RPR=0;RUN=1;SAF=3390;SAP=7364.3;SAR=0;SRF=1391;SRP=3023.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:58:31,27:31:1112:27:968:-69.9694,0,-82.9316	0/1:48:25,23:25:900:23:824:-60.0339,0,-66.8716	0/1:117:67,50:67:2392:50:1800:-127.039,0,-180.317	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:108:0,108:0:0:108:3863:-347.834,-32.5112,0	0/1:67:28,39:28:1000:39:1388:-105.042,0,-70.1464	1/1:75:0,75:0:0:75:2696:-242.883,-22.5773,0	0/1:84:39,45:39:1385:45:1608:-119.706,0,-99.6603	1/1:20:0,20:0:0:20:697:-63.0483,-6.0206,0	1/1:36:0,36:0:0:36:1283:-115.764,-10.8371,0	0/1:32:21,11:21:756:11:383:-25.1703,0,-58.7343	0/1:39:19,20:19:684:20:704:-51.9397,0,-50.1502	0/1:36:19,17:19:672:17:597:-43.2186,0,-49.9698	0/1:29:4,25:4:140:25:873:-70.1454,0,-4.21471	1/1:29:0,29:0:0:29:1021:-92.2001,-8.72987,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:19:9,10:9:320:10:338:-25.0256,0,-23.4228	0/1:45:16,29:16:572:29:1021:-78.6539,0,-38.2671	1/1:84:0,83:0:0:83:2948:-265.187,-24.9855,0	0/1:36:26,10:26:928:10:360:-21.9072,0,-72.9996	1/1:34:0,34:0:0:34:1197:-108.031,-10.235,0	0/1:66:29,37:29:1036:37:1320:-99.234,0,-73.6836	0/1:32:16,16:16:576:16:563:-41.3616,0,-42.542	0/1:189:89,100:89:3165:100:3574:-264.528,0,-228.179	1/1:104:1,103:1:36:103:3670:-326.901,-27.7088,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:118:53,65:53:1874:65:2336:-174.977,0,-133.407	1/1:104:4,100:4:144:100:3581:-309.169,-17.9935,0	1/1:77:1,76:1:36:76:2688:-238.563,-19.581,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:128:62,66:62:2228:66:2346:-172.866,0,-162.252	0/1:98:45,53:45:1596:53:1880:-139.975,0,-114.429	0/1:30:15,15:15:540:15:536:-39.5357,0,-39.9056	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:81:42,39:42:1495:39:1400:-101.908,0,-110.46	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:44:23,21:23:815:21:752:-54.7563,0,-60.4254	0/1:28:17,11:17:612:11:392:-27.1889,0,-46.9846	0/1:35:14,21:14:500:21:752:-57.4702,0,-34.8001	1/1:69:0,69:0:0:69:2465:-222.1,-20.7711,0	1/1:28:0,28:0:0:28:995:-89.5739,-8.42884,0	0/1:95:48,47:48:1712:47:1680:-122.872,0,-125.768	1/1:59:0,59:0:0:59:2107:-189.896,-17.7608,0	0/1:70:39,31:39:1400:31:1108:-78.9589,0,-105.209	0/1:60:35,25:35:1256:25:896:-62.8986,0,-95.2835	1/1:9:0,9:0:0:9:312:-28.4154,-2.70927,0	0/1:47:22,25:22:784:25:883:-65.639,0,-56.7355	1/1:25:0,25:0:0:25:892:-80.5942,-7.52575,0	0/0:106:100,6:100:3560:6:216:0,-12.1187,-300.812	0/1:65:27,38:27:968:38:1351:-102.318,0,-67.8704	0/1:29:7,22:7:244:22:780:-61.7775,0,-13.5696	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:7:0,7:0:0:7:252:-23.028,-2.10721,0	1/1:52:0,52:0:0:52:1868:-168.116,-15.6536,0	1/1:82:0,82:0:0:82:2904:-261.545,-24.6845,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:153:2,151:2:72:151:5397:-479.015,-39.2209,0	1/1:121:1,120:1:36:120:4285:-382.227,-32.8264,0	0/1:42:17,25:17:612:25:887:-67.4872,0,-42.7702	1/1:38:0,38:0:0:38:1349:-121.673,-11.4391,0	0/1:89:47,42:47:1661:42:1508:-109.223,0,-122.666	0/1:30:20,10:20:716:10:360:-23.7134,0,-55.7368	1/1:11:0,11:0:0:11:383:-34.6725,-3.31133,0	1/1:37:0,37:0:0:37:1315:-118.649,-11.1381,0	0/1:47:22,25:22:792:25:864:-63.9239,0,-57.4573	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6438	1/1:45:0,45:0:0:45:1593:-143.65,-13.5464,0	0/1:53:26,27:26:928:27:964:-71.1141,0,-67.8837	1/1:87:0,87:0:0:87:3109:-279.698,-26.1896,0	1/1:45:0,45:0:0:45:1620:-146.088,-13.5464,0	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	1/1:84:7,76:7:252:76:2728:-222.658,-2.31557,0	1/1:28:0,28:0:0:28:995:-89.7569,-8.42884,0	1/1:64:0,64:0:0:64:2296:-206.893,-19.2659,0	0/1:42:20,22:20:708:22:771:-57.0579,0,-51.4014	0/1:108:51,57:51:1824:57:2028:-150.273,0,-131.929	0/1:72:35,37:35:1244:37:1319:-97.2923,0,-90.5905	0/1:32:21,11:21:756:11:396:-26.3498,0,-58.7343	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	0/1:84:35,49:35:1248:49:1756:-133.004,0,-87.3383	1/1:24:0,24:0:0:24:856:-77.3529,-7.22472,0	1/1:46:0,46:0:0:46:1633:-147.159,-13.8474,0	1/1:39:0,39:0:0:39:1382:-124.256,-11.7402,0	0/1:21:10,11:10:345:11:396:-29.6611,0,-25.0592	0/1:57:31,26:31:1104:26:932:-67.0402,0,-82.5119	0/1:33:20,13:20:716:13:449:-30.8035,0,-54.8337	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:44:0,44:0:0:44:1563:-140.96,-13.2453,0
chr07	7133130	.	A	G	138004	PASS	AB=0.485371;ABP=13.3664;AC=134;AF=0.712766;AN=188;AO=6639;CIGAR=1X;DP=9530;DPB=9530;DPRA=51.2258;EPP=14014.1;EPPR=6039.89;GTI=1;LEN=1;MEANALT=1;MQM=59.9898;MQMR=59.9948;NS=94;NUMALT=1;ODDS=3.89608;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237231;QR=103658;RO=2891;RPL=6592;RPP=14014.1;RPPR=6039.89;RPR=47;RUN=1;SAF=6639;SAP=14419.4;SAR=0;SRF=2891;SRP=6280.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:29,14:29:1040:14:500:-32.3919,0,-80.9701	0/1:141:68,73:68:2444:73:2620:-193.602,0,-177.769	0/1:115:57,58:57:2033:58:2065:-151.493,0,-148.622	0/1:180:89,91:89:3181:91:3272:-240.514,0,-232.327	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:159:2,157:2:72:157:5636:-500.522,-41.027,0	0/1:172:87,85:87:3116:85:3032:-221.331,0,-228.889	1/1:115:0,115:0:0:115:4132:-372.062,-34.6185,0	0/1:109:58,51:58:2084:51:1821:-131.357,0,-155.018	1/1:56:0,56:0:0:56:2005:-180.722,-16.8577,0	1/1:61:0,61:0:0:61:2169:-195.475,-18.3628,0	0/1:81:39,42:39:1396:42:1482:-109.287,0,-101.556	0/1:84:46,38:46:1648:38:1360:-97.4141,0,-123.322	0/1:35:19,16:19:680:16:576:-41.6389,0,-50.9931	0/1:39:23,16:23:828:16:572:-40.0733,0,-63.1039	1/1:67:1,66:1:36:66:2349:-208.069,-16.5707,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:160:73,87:73:2620:87:3112:-232.142,0,-187.882	1/1:101:0,101:0:0:101:3601:-324.296,-30.404,0	0/1:171:119,52:119:4272:52:1868:-116.923,0,-333.181	1/1:141:1,140:1:36:140:5017:-448.071,-38.847,0	0/1:112:44,68:44:1584:68:2432:-185.42,0,-109.136	0/1:77:38,39:38:1364:39:1385:-101.768,0,-99.8814	0/1:323:166,157:166:5957:157:5567:-403.919,0,-439.001	1/1:163:0,163:0:0:163:5848:-526.43,-49.0679,0	1/1:25:0,25:0:0:25:862:-77.8907,-7.52575,0	0/1:208:102,106:102:3653:106:3797:-279.312,0,-266.358	1/1:132:7,125:7:252:125:4469:-379.219,-16.707,0	1/1:216:4,212:4:140:212:7562:-667.671,-52.0779,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:11:8,3:8:288:3:104:-6.39148,0,-22.9561	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:145:79,66:79:2840:66:2348:-167.928,0,-212.188	0/1:314:161,153:161:5766:153:5471:-397.994,0,-424.528	0/1:41:24,17:24:864:17:612:-43.0712,0,-65.7403	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:164:86,78:86:3088:78:2777:-200.8,0,-228.778	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:194:90,104:90:3221:104:3728:-277.321,0,-231.709	0/1:51:30,21:30:1080:21:752:-52.6537,0,-82.1607	0/1:45:20,25:20:716:25:887:-66.6018,0,-51.2214	1/1:105:0,105:0:0:105:3763:-338.868,-31.6082,0	1/1:127:0,127:0:0:127:4542:-408.943,-38.2308,0	0/1:209:91,118:91:3268:118:4236:-318.503,0,-231.424	1/1:143:0,143:0:0:143:5119:-460.852,-43.0473,0	0/1:163:88,75:88:3145:75:2700:-194.175,0,-234.206	0/1:147:71,76:71:2541:76:2713:-200.161,0,-184.688	1/1:25:0,25:0:0:25:877:-79.2452,-7.52575,0	0/1:152:76,76:76:2717:76:2724:-199.646,0,-199.015	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.5032	0/1:92:39,53:39:1400:53:1900:-143.583,0,-98.6044	0/1:135:80,55:80:2865:55:1980:-137.835,0,-217.446	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:135:0,135:0:0:135:4786:-430.893,-40.6391,0	1/1:129:0,129:0:0:129:4613:-415.332,-38.8329,0	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	1/1:203:0,203:0:0:203:7228:-650.571,-61.1091,0	1/1:253:2,251:2:72:251:8948:-798.462,-69.3239,0	0/1:85:45,40:45:1612:40:1435:-103.86,0,-119.783	1/1:62:0,62:0:0:62:2197:-197.994,-18.6639,0	0/1:177:84,93:84:3001:93:3298:-243.755,0,-217.038	0/1:101:80,21:80:2876:21:756:-37.9632,0,-228.672	1/1:22:1,21:1:36:21:747:-63.956,-3.02439,0	1/1:97:1,96:1:36:96:3406:-303.155,-25.6016,0	0/1:84:44,40:44:1584:40:1435:-104.161,0,-117.565	0/1:33:14,19:14:500:19:680:-51.5952,0,-35.4022	1/1:111:0,111:0:0:111:3972:-357.671,-33.4143,0	0/1:64:33,31:33:1188:31:1097:-79.7727,0,-87.9627	1/1:266:0,266:0:0:266:9529:-857.564,-80.074,0	1/1:111:0,111:0:0:111:3965:-357.04,-33.4143,0	0/1:187:97,90:97:3473:90:3219:-233.639,0,-256.487	1/1:118:0,118:0:0:118:4213:-379.35,-35.5215,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:103:2,101:2:72:101:3613:-318.537,-24.1694,0	0/1:113:59,54:59:2116:54:1940:-140.86,0,-156.692	0/1:219:109,110:109:3901:110:3933:-288.235,0,-285.356	0/1:95:39,56:39:1404:56:1997:-151.404,0,-98.0614	0/1:68:35,33:35:1252:33:1169:-85.0452,0,-92.515	1/1:76:0,76:0:0:76:2736:-246.482,-22.8783,0	0/1:95:51,44:51:1836:44:1576:-113.534,0,-136.923	1/1:32:1,31:1:36:31:1099:-95.6218,-6.03469,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:41:0,41:0:0:41:1457:-131.425,-12.3422,0	0/1:62:33,29:33:1188:29:1044:-75.6109,0,-88.5647	0/1:107:56,51:56:2012:51:1817:-131.599,0,-149.143	0/1:56:34,22:34:1212:22:777:-53.3935,0,-92.5286	1/1:123:0,123:0:0:123:4364:-392.931,-37.0267,0	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0
chr07	7322023	.	A	G	25294.2	PASS	AB=0.395594;ABP=299.554;AC=51;AF=0.271277;AN=188;AO=1248;CIGAR=1X;DP=5585;DPB=5585;DPRA=1.13325;EPP=143.349;EPPR=3.69637;GTI=2;LEN=1;MEANALT=1.01754;MQM=59.9776;MQMR=59.964;NS=94;NUMALT=1;ODDS=1.55433;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44087;QR=154827;RO=4333;RPL=0;RPP=2713.01;RPPR=9412;RPR=1248;RUN=1;SAF=766;SAP=143.349;SAR=482;SRF=2185;SRP=3.69637;SRR=2148;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:16,9:16:572:9:316:-21.2531,0,-44.2877	0/1:40:27,13:27:968:13:455:-29.2408,0,-75.3962	0/1:102:68,34:68:2432:34:1211:-78.5905,0,-188.003	0/1:39:22,17:22:769:17:608:-43.3119,0,-57.7884	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:75:75,0:75:2661:0:0:0,-22.5772,-239.735	0/1:56:44,12:44:1576:12:432:-22.3635,0,-125.274	0/0:67:67,0:67:2394:0:0:0,-20.169,-215.716	0/1:57:33,24:33:1180:24:852:-59.8417,0,-89.3493	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:141:141,0:141:5024:0:0:0,-42.4452,-452.307	0/1:115:67,48:67:2387:48:1707:-119.294,0,-180.469	0/1:87:48,39:48:1720:39:1355:-96.0551,0,-128.896	0/1:109:57,52:57:2048:52:1837:-132.796,0,-151.779	0/1:105:63,42:63:2256:42:1500:-103.686,0,-171.695	0/0:88:87,1:87:3112:1:32:0,-23.2913,-277.108	0/0:81:80,1:80:2848:1:36:0,-20.7852,-252.956	0/1:52:31,21:31:1112:21:735:-50.8041,0,-84.7378	0/1:52:37,15:37:1324:15:536:-32.9213,0,-103.752	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.876	0/1:15:5,10:5:180:10:341:-26.5023,0,-12.0366	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/1:23:18,5:18:644:5:176:-9.26133,0,-51.3669	0/1:30:22,8:22:758:8:254:-14.1383,0,-59.5033	0/1:105:80,25:80:2872:25:877:-47.6371,0,-227.108	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/1:64:35,29:35:1248:29:1023:-73.1158,0,-93.3589	0/0:38:37,1:37:1319:1:21:0,-9.33919,-116.84	0/0:58:57,1:57:2036:1:36:0,-13.8615,-179.914	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:233:136,97:136:4872:97:3392:-235.352,0,-368.493	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:71:40,31:40:1428:31:1084:-76.4938,0,-107.444	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:42:32,10:32:1129:10:360:-20.101,0,-89.2731	0/1:46:28,18:28:1004:18:627:-42.907,0,-76.8285	0/1:55:46,9:46:1629:9:312:-11.8587,0,-130.34	0/1:114:60,54:60:2143:54:1924:-139.119,0,-158.791	0/1:79:44,35:44:1576:35:1236:-87.7629,0,-118.35	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.398	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/1:66:43,23:43:1540:23:808:-53.1721,0,-119.025	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:56:29,27:29:1044:27:952:-69.1375,0,-77.4171	0/1:39:23,16:23:820:16:560:-38.9886,0,-62.3823	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:32:21,11:21:756:11:392:-25.9871,0,-58.7343	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:52:39,13:39:1392:13:460:-26.0818,0,-109.919	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.273	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:49:48,1:48:1720:1:32:0,-11.5512,-151.886	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:23:15,8:15:532:8:284:-18.9797,0,-41.2894	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:54:31,23:31:1093:23:824:-58.2277,0,-82.422	0/1:35:16,19:16:576:19:676:-50.6313,0,-41.6389	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.031	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/1:101:62,39:62:2197:39:1352:-91.5713,0,-167.59	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/0:27:26,1:26:936:1:36:0,-4.52953,-80.9612	0/1:36:19,17:19:676:17:612:-44.5764,0,-50.3309	0/0:76:75,1:75:2696:1:32:0,-19.679,-239.527	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/1:40:29,11:29:1044:11:381:-22.5794,0,-82.2336	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:61:60,0:60:2152:0:0:0,-18.0618,-193.587	0/1:43:26,17:26:914:17:599:-41.2938,0,-69.3599	0/1:94:65,29:65:2332:29:1028:-64.5362,0,-181.843	0/1:120:80,40:80:2864:40:1428:-92.6939,0,-221.874	0/1:110:55,55:55:1968:55:1960:-143.562,0,-144.282	0/0:114:114,0:114:4064:0:0:0,-34.3174,-365.949	0/1:195:103,90:103:3676:90:3196:-229.407,0,-272.586	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:121:120,0:120:4300:0:0:0,-36.1236,-386.856	0/1:92:51,41:51:1798:41:1460:-104.001,0,-134.406	0/1:96:55,41:55:1964:41:1452:-102.074,0,-148.136	0/1:76:38,38:38:1356:38:1360:-99.8223,0,-99.4622	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:188:188,0:188:6720:0:0:0,-56.5936,-604.877
chr07	7355324	.	T	C	158272	PASS	AB=0.474278;ABP=43.7847;AC=133;AF=0.715054;AN=186;AO=7968;CIGAR=1X;DP=11732;DPB=11732;DPRA=42.4964;EPP=17305.3;EPPR=8167.75;GTI=3;LEN=1;MEANALT=1.04348;MQM=59.9142;MQMR=59.9662;NS=93;NUMALT=1;ODDS=3.77527;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281134;QR=134197;RO=3760;RPL=0;RPP=17305.3;RPPR=8167.75;RPR=7968;RUN=1;SAF=0;SAP=17305.3;SAR=7968;SRF=0;SRP=8167.75;SRR=3760;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:14,11:14:496:11:396:-28.457,0,-37.4485	0/1:201:122,79:122:4359:79:2798:-191.55,0,-331.87	0/1:161:100,61:100:3584:61:2188:-148.72,0,-274.301	0/1:343:180,163:180:6460:163:5733:-412.837,0,-478.231	1/1:86:0,85:0:0:85:3032:-272.749,-25.5876,0	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	1/1:229:0,229:0:0:229:8080:-727.221,-68.9359,0	0/1:137:73,64:73:2612:64:2241:-160.686,0,-194.087	1/1:67:0,67:0:0:67:2379:-214.345,-20.169,0	0/1:108:60,48:60:2144:48:1703:-121.044,0,-160.717	1/1:65:1,64:1:36:64:2252:-199.342,-15.9687,0	1/1:78:0,78:0:0:78:2718:-244.861,-23.4803,0	0/1:97:45,52:45:1607:52:1813:-134.249,0,-115.719	0/1:68:27,41:27:972:41:1443:-109.694,0,-67.3279	0/1:93:39,54:39:1396:54:1886:-142.019,0,-97.9433	0/1:68:36,32:36:1262:32:1118:-80.4531,0,-93.4109	1/1:82:0,82:0:0:82:2881:-259.526,-24.6845,0	1/1:62:0,62:0:0:62:2189:-197.274,-18.6639,0	0/1:46:22,24:22:788:24:819:-60.1742,0,-57.3974	0/1:367:163,204:163:5813:204:7187:-536.415,0,-412.806	1/1:153:0,153:0:0:153:5430:-488.834,-46.0576,0	0/1:212:162,49:162:5804:49:1724:-91.5654,0,-458.596	1/1:116:3,113:3:108:113:4009:-350.923,-24.8443,0	0/1:121:57,64:57:2031:64:2280:-169.035,0,-146.637	0/1:80:32,48:32:1152:48:1680:-127.401,0,-79.9077	0/1:336:177,159:177:6310:159:5662:-408.555,0,-466.848	1/1:239:0,239:0:0:239:8420:-757.807,-71.9462,0	1/1:60:0,60:0:0:60:2114:-190.527,-18.0618,0	0/1:451:215,235:215:7664:235:8266:-608.132,0,-553.974	1/1:121:8,113:8:284:113:3994:-333.748,-10.5213,0	1/1:123:1,122:1:36:122:4314:-384.842,-33.4284,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:28:0,28:0:0:28:997:-90.0439,-8.42884,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/1:243:119,124:119:4228:124:4365:-319.877,0,-307.55	0/1:288:157,131:157:5611:131:4605:-327.885,0,-418.416	0/1:65:30,35:30:1071:35:1218:-90.3549,0,-77.1347	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:339:190,149:190:6803:149:5287:-373.916,0,-510.292	0/1:48:18,30:18:644:30:1050:-80.3593,0,-43.8412	0/1:187:112,75:112:4004:75:2649:-182.364,0,-304.235	0/1:80:32,48:32:1139:48:1707:-129.833,0,-78.736	0/1:69:31,38:31:1098:38:1312:-97.6026,0,-78.3575	1/1:126:0,126:0:0:126:4367:-393.208,-37.9298,0	1/1:122:0,122:0:0:122:4345:-390.855,-36.7257,0	0/1:209:90,119:90:3183:119:4154:-310.934,0,-223.765	1/1:133:1,132:1:36:132:4654:-415.4,-36.4387,0	0/1:129:75,54:75:2688:54:1909:-133.236,0,-203.332	0/1:231:131,100:131:4687:100:3503:-245.944,0,-352.452	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:361:155,206:155:5544:206:7300:-548.383,0,-390.413	1/1:44:0,44:0:0:44:1547:-139.29,-13.2453,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:196:103,93:103:3687:93:3291:-237.405,0,-273.008	0/1:36:23,13:23:806:13:453:-30.2395,0,-62.0211	.:.:.:.:.:.:.:.	1/1:17:0,17:0:0:17:595:-53.8767,-5.11751,0	1/1:63:0,63:0:0:63:2235:-201.389,-18.9649,0	1/1:134:1,133:1:36:133:4660:-415.951,-36.7397,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:228:5,223:5:176:223:7870:-692.15,-52.4498,0	1/1:167:6,161:6:212:161:5714:-494.785,-30.8472,0	0/1:83:39,44:39:1392:44:1558:-115.525,0,-100.594	1/1:148:0,148:0:0:148:5233:-470.775,-44.5524,0	0/1:201:104,97:104:3732:97:3380:-243.908,0,-275.573	0/1:160:119,41:119:4208:41:1451:-82.7204,0,-330.722	1/1:26:0,26:0:0:26:923:-83.3868,-7.82678,0	1/1:136:0,136:0:0:136:4821:-434.048,-40.9401,0	0/1:89:51,38:51:1789:38:1340:-94.1056,0,-134.499	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:143:0,143:0:0:143:5026:-452.49,-43.0473,0	0/1:45:26,19:26:923:19:673:-47.3448,0,-69.8404	1/1:129:0,129:0:0:129:4578:-412.185,-38.8329,0	1/1:420:1,419:1:36:419:14899:-1337.03,-122.834,0	0/1:73:40,33:40:1431:33:1146:-81.469,0,-107.112	1/1:96:1,95:1:36:95:3338:-297.033,-25.3006,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:387:0,387:0:0:387:13768:-1238.87,-116.499,0	0/1:181:112,69:112:4012:69:2427:-164.196,0,-306.555	0/1:267:140,127:140:5011:127:4464:-321.533,0,-370.761	0/1:99:51,48:51:1815:48:1683:-121.951,0,-133.829	0/1:78:43,35:43:1536:35:1210:-85.7196,0,-115.053	1/1:99:0,99:0:0:99:3459:-311.526,-29.802,0	0/1:167:85,82:85:3027:82:2879:-209.061,0,-222.389	1/1:55:0,55:0:0:55:1927:-173.704,-16.5567,0	1/1:89:1,88:1:36:88:3088:-274.496,-23.1934,0	1/1:91:0,91:0:0:91:3214:-289.482,-27.3937,0	0/1:54:23,31:23:812:31:1081:-81.3407,0,-57.1453	0/1:89:35,54:35:1252:54:1916:-145.926,0,-86.1934	0/1:72:46,26:46:1614:26:905:-60.0877,0,-123.789	1/1:96:0,96:0:0:96:3397:-305.944,-28.8989,0	1/1:111:0,110:0:0:110:3850:-346.325,-33.1133,0
chr07	7355351	.	C	T	168304	PASS	AB=0.476184;ABP=38.9011;AC=133;AF=0.715054;AN=186;AO=8201;CIGAR=1X;DP=12048;DPB=12048;DPRA=43.6413;EPP=17353.9;EPPR=8145.16;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.8689;MQMR=59.9537;NS=93;NUMALT=1;ODDS=3.93242;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=292149;QR=137557;RO=3845;RPL=8148;RPP=17353.9;RPPR=8145.16;RPR=53;RUN=1;SAF=0;SAP=17811.3;SAR=8201;SRF=0;SRP=8352.32;SRR=3845;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:14,12:14:489:12:432:-31.3944,0,-36.5121	0/1:201:123,78:123:4409:78:2774:-189.391,0,-335.983	0/1:165:101,64:101:3609:64:2304:-157.951,0,-275.345	0/1:353:186,167:186:6684:167:5962:-430.422,0,-495.365	1/1:90:0,90:0:0:90:3202:-288.398,-27.0927,0	1/1:47:0,47:0:0:47:1673:-150.855,-14.1484,0	1/1:243:0,243:0:0:243:8608:-774.293,-73.1503,0	0/1:142:76,66:76:2705:66:2320:-166.259,0,-200.943	1/1:68:0,67:0:0:67:2370:-213.193,-20.169,0	0/1:112:63,49:63:2253:49:1764:-125.328,0,-169.316	1/1:66:0,66:0:0:66:2372:-213.722,-19.868,0	1/1:77:0,77:0:0:77:2749:-247.651,-23.1793,0	0/1:97:45,52:45:1620:52:1857:-138.207,0,-116.889	0/1:71:29,42:29:1032:42:1512:-115.001,0,-71.8179	0/1:93:40,53:40:1440:53:1908:-144.002,0,-101.902	0/1:69:36,33:36:1277:33:1163:-84.2006,0,-94.46	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	1/1:61:0,61:0:0:61:2192:-197.535,-18.3628,0	0/1:44:21,23:21:741:23:828:-61.5984,0,-53.7663	0/1:377:168,209:168:6036:209:7469:-558.735,0,-429.847	1/1:160:0,160:0:0:160:5719:-514.819,-48.1648,0	0/1:219:168,51:168:6002:51:1823:-98.4167,0,-474.357	1/1:118:3,115:3:108:115:4100:-359.107,-25.4464,0	0/1:122:57,65:57:2052:65:2340:-174.131,0,-148.226	0/1:84:32,52:32:1152:52:1853:-141.76,0,-78.7036	0/1:340:178,162:178:6366:162:5782:-418.135,0,-470.677	1/1:249:0,249:0:0:249:8903:-801.239,-74.9565,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:463:217,246:217:7758:246:8741:-647.28,0,-558.872	1/1:127:8,119:8:280:119:4205:-353.087,-12.6915,0	1/1:125:0,124:0:0:124:4445:-399.858,-37.3277,0	0/1:7:6,1:6:201:1:36:-1.49107,0,-16.3098	1/1:28:0,28:0:0:28:989:-89.322,-8.42884,0	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:249:123,126:123:4403:126:4470:-327.511,0,-321.485	0/1:296:160,136:160:5744:136:4818:-344.626,0,-427.969	0/1:66:31,35:31:1116:35:1260:-93.8375,0,-80.8837	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:347:194,153:194:6949:153:5496:-390.304,0,-521.009	0/1:48:17,31:17:612:31:1112:-85.9419,0,-40.964	0/1:195:117,78:117:4166:78:2800:-193.539,0,-316.396	0/1:84:33,51:33:1184:51:1828:-139.514,0,-81.5818	0/1:75:36,39:36:1292:39:1389:-102.722,0,-94.0056	1/1:135:0,135:0:0:135:4797:-431.883,-40.6391,0	1/1:124:0,124:0:0:124:4396:-395.216,-37.3277,0	0/1:212:90,122:90:3201:122:4335:-326.178,0,-224.489	1/1:134:1,133:1:36:133:4760:-424.912,-36.7397,0	0/1:129:71,58:71:2522:58:2033:-144.403,0,-188.396	0/1:245:135,110:135:4781:110:3906:-277.944,0,-356.69	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:366:161,205:161:5792:205:7341:-550.555,0,-411.205	1/1:43:0,43:0:0:43:1548:-138.756,-12.9443,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:198:105,93:105:3738:93:3321:-239.494,0,-276.992	0/1:39:25,14:25:896:14:483:-31.984,0,-69.2202	.:.:.:.:.:.:.:.	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:68:0,68:0:0:68:2402:-216.407,-20.47,0	1/1:140:2,138:2:72:138:4960:-439.696,-35.3075,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:234:4,230:4:144:230:8215:-725.882,-57.1274,0	1/1:173:6,167:6:216:167:5932:-514.149,-32.2877,0	0/1:87:40,47:40:1425:47:1676:-124.938,0,-102.356	1/1:152:0,152:0:0:152:5396:-485.669,-45.7566,0	0/1:211:106,105:106:3782:105:3677:-267.599,0,-277.059	0/1:163:121,42:121:4302:42:1467:-83.2505,0,-338.283	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:138:0,138:0:0:138:4933:-444.113,-41.5421,0	0/1:93:52,41:52:1872:41:1461:-103.788,0,-140.763	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	1/1:145:0,145:0:0:145:5160:-463.175,-43.6494,0	0/1:46:26,20:26:936:20:686:-48.2065,0,-70.7121	1/1:133:0,133:0:0:133:4769:-429.363,-40.037,0	1/1:424:0,424:0:0:424:15044:-1353.64,-127.637,0	0/1:78:42,36:42:1508:36:1232:-87.6905,0,-112.534	1/1:99:1,98:1:36:98:3475:-309.356,-26.2037,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:393:0,393:0:0:393:13876:-1248.57,-118.305,0	0/1:188:118,70:118:4229:70:2489:-167.663,0,-323.967	0/1:274:142,132:142:5088:132:4697:-340.379,0,-375.581	0/1:103:53,50:53:1900:50:1781:-129.565,0,-140.268	0/1:79:44,35:44:1584:35:1256:-89.5639,0,-119.07	1/1:104:0,104:0:0:104:3720:-334.999,-31.3071,0	0/1:170:88,82:88:3156:82:2923:-212.123,0,-233.088	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:93:1,92:1:36:92:3274:-290.843,-24.3975,0	1/1:90:0,90:0:0:90:3240:-291.82,-27.0927,0	0/1:54:23,31:23:828:31:1116:-84.4961,0,-58.5885	0/1:93:35,58:35:1260:58:2064:-158.033,0,-85.7097	0/1:74:48,26:48:1713:26:917:-60.566,0,-132.02	1/1:98:0,98:0:0:98:3509:-316.015,-29.5009,0	1/1:114:0,114:0:0:114:4085:-367.821,-34.3174,0
chr07	7355362	.	A	G	65768.3	PASS	AB=0.52633;ABP=46.6924;AC=53;AF=0.284946;AN=186;AO=3846;CIGAR=1X;DP=11993;DPB=11993;DPRA=1.27214;EPP=8354.49;EPPR=17689.7;GTI=3;LEN=1;MEANALT=1.03333;MQM=59.96;MQMR=59.8839;NS=93;NUMALT=1;ODDS=3.46986;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137441;QR=291467;RO=8145;RPL=3846;RPP=8354.49;RPPR=17689.7;RPR=0;RUN=1;SAF=0;SAP=8354.49;SAR=3846;SRF=0;SRP=17689.7;SRR=8145;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:11,15:11:396:15:529:-40.1139,0,-28.156	0/1:202:78,124:78:2782:124:4427:-337.303,0,-189.784	0/1:165:63,102:63:2268:102:3644:-278.495,0,-154.712	0/1:351:166,185:166:5934:185:6607:-489.044,0,-428.506	0/0:89:89,0:89:3166:0:0:0,-26.7917,-285.162	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:241:241,0:241:8619:0:0:0,-72.5482,-774.809	0/1:140:65,75:65:2332:75:2653:-196.87,0,-167.949	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.233	0/1:110:48,62:48:1720:62:2209:-165.96,0,-121.972	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.238	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:97:51,46:51:1836:46:1644:-119.047,0,-136.32	0/1:71:41,30:41:1464:30:1076:-75.7749,0,-110.683	0/1:94:53,41:53:1900:41:1472:-104.479,0,-142.981	0/1:69:32,37:32:1143:37:1297:-96.2585,0,-82.3852	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.622	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.773	0/1:47:24,23:24:860:23:824:-60.3349,0,-63.573	0/1:376:208,168:208:7443:168:6024:-429.07,0,-556.702	0/0:158:158,0:158:5607:0:0:0,-47.5627,-504.748	0/1:214:49,165:49:1760:165:5896:-466.331,0,-94.2635	0/0:117:114,3:114:4083:3:108:0,-25.1453,-357.58	0/1:121:64,57:64:2304:57:2043:-147.717,0,-171.193	0/1:84:52,32:52:1847:32:1152:-78.7036,0,-141.22	0/1:342:164,178:164:5864:178:6380:-471.336,0,-424.917	0/0:246:246,0:246:8799:0:0:0,-74.0534,-791.888	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:454:242,211:242:8688:211:7555:-543.263,0,-645.174	0/0:127:119,8:119:4247:8:284:0,-12.3275,-356.506	0/0:124:124,0:124:4407:0:0:0,-37.3277,-396.803	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:249:126,123:126:4523:123:4416:-322.654,0,-332.279	0/1:296:135,161:135:4810:161:5772:-430.489,0,-343.836	0/1:66:35,31:35:1252:31:1107:-80.0722,0,-93.1171	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:346:152,194:152:5452:194:6911:-517.899,0,-386.648	0/1:48:31,17:31:1094:17:612:-40.964,0,-84.3188	0/1:194:77,117:77:2760:117:4192:-319.037,0,-190.242	0/1:84:51,33:51:1820:33:1188:-81.9421,0,-138.795	0/1:74:38,36:38:1360:36:1283:-93.4963,0,-100.416	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.799	0/0:123:123,0:123:4407:0:0:0,-37.0267,-396.766	0/1:214:123,91:123:4400:91:3253:-228.568,0,-331.434	0/0:136:135,1:135:4811:1:36:0,-37.3418,-429.293	0/1:131:58,73:58:2072:73:2612:-195.893,0,-147.288	0/1:241:105,136:105:3752:136:4856:-364.644,0,-265.315	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:370:211,159:211:7563:159:5692:-401.009,0,-569.322	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.215	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:199:92,107:92:3304:107:3828:-284.785,0,-237.651	0/1:39:14,25:14:496:25:892:-68.8595,0,-33.1127	.:.:.:.:.:.:.:.	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.634	0/0:140:139,1:139:4944:1:36:0,-38.5459,-441.498	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:232:228,4:228:8159:4:121:0,-58.6494,-723.129	0/0:170:164,6:164:5892:6:216:0,-31.3846,-510.514	0/1:87:46,41:46:1636:41:1463:-105.776,0,-121.339	0/0:147:147,0:147:5255:0:0:0,-44.2514,-472.944	0/1:210:103,107:103:3662:107:3828:-281.5,0,-266.566	0/1:160:40,120:40:1432:120:4288:-337.92,0,-81.0128	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:137:137,0:137:4904:0:0:0,-41.2411,-441.507	0/1:93:41,52:41:1468:52:1856:-139.324,0,-104.42	0/1:14:8,6:8:284:6:212:-15.2104,0,-21.6889	0/0:145:145,0:145:5204:0:0:0,-43.6493,-468.497	0/1:46:20,26:20:712:26:928:-69.9909,0,-50.5359	0/0:132:132,0:132:4728:0:0:0,-39.736,-425.675	0/0:426:426,0:426:15247:0:0:0,-128.239,-1371.91	0/1:75:33,42:33:1188:42:1508:-113.437,0,-84.6155	0/0:101:100,1:100:3575:1:36:0,-26.8058,-318.354	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:394:394,0:394:14131:0:0:0,-118.606,-1271.5	0/1:184:68,116:68:2440:116:4151:-318.383,0,-164.46	0/1:272:129,142:129:4620:142:5068:-374.326,0,-333.995	0/1:102:49,53:49:1755:53:1900:-140.57,0,-127.528	0/1:79:35,44:35:1260:44:1571:-117.899,0,-89.9241	0/0:102:102,0:102:3650:0:0:0,-30.7051,-328.702	0/1:169:80,89:80:2867:89:3152:-233.03,0,-207.375	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:93:92,1:92:3304:1:36:0,-24.3975,-293.558	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/1:54:31,23:31:1116:23:828:-58.5885,0,-84.4961	0/1:93:57,36:57:2036:36:1288:-88.2278,0,-155.516	0/1:72:24,48:24:852:48:1693:-130.979,0,-55.3239	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.884	0/0:111:111,0:111:3975:0:0:0,-33.4143,-357.926
chr07	7455409	.	G	A	137569	PASS	AB=0.512143;ABP=18.5674;AC=53;AF=0.281915;AN=188;AO=6245;CIGAR=1X;DP=18864;DPB=18864;DPRA=1.50972;EPP=2885.08;EPPR=5204.56;GTI=1;LEN=1;MEANALT=1.06349;MQM=55.7204;MQMR=59.9633;NS=94;NUMALT=1;ODDS=2.5822;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222823;QR=449541;RO=12610;RPL=34;RPP=13270.1;RPPR=26763.5;RPR=6211;RUN=1;SAF=4596;SAP=3022.84;SAR=1649;SRF=9125;SRP=5480.7;SRR=3485;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:23,25:23:824:25:900:-66.7735,0,-60.0339	0/1:67:36,31:36:1292:31:1112:-79.9173,0,-96.4148	0/1:139:72,67:72:2575:67:2389:-173.07,0,-190.155	0/1:318:154,164:154:5467:164:5850:-430.444,0,-396.433	0/0:94:94,0:94:3348:0:0:0,-28.2968,-301.538	0/0:41:41,0:41:1442:0:0:0,-12.3422,-130.072	0/0:179:178,1:178:6217:1:36:0,-50.2861,-555.947	0/1:87:49,38:49:1756:38:1356:-95.5674,0,-132.134	0/0:68:68,0:68:2417:0:0:0,-20.47,-217.785	0/1:145:64,81:64:2273:81:2912:-218.463,0,-161.177	0/0:339:338,0:338:12103:0:0:0,-101.748,-1088.67	0/0:116:116,0:116:4138:0:0:0,-34.9195,-372.601	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/1:106:54,52:54:1936:52:1837:-133.252,0,-142.607	0/1:128:65,63:65:2287:63:2252:-163.299,0,-167.558	0/1:151:87,64:87:3104:64:2282:-159.335,0,-234.133	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:188:114,74:114:4066:74:2645:-181.097,0,-309.373	0/1:159:80,79:80:2822:79:2840:-207.546,0,-206.354	0/0:224:220,2:220:7833:2:72:0,-60.3565,-698.171	0/1:88:23,65:23:824:65:2309:-181.263,0,-47.9927	0/0:224:221,3:221:7859:3:108:0,-57.3604,-697.269	0/1:137:77,60:77:2760:60:2156:-152.909,0,-207.4	0/1:156:74,82:74:2648:82:2906:-214.319,0,-191.577	0/1:273:136,137:136:4847:137:4888:-357.683,0,-354.204	0/0:192:192,0:192:6837:0:0:0,-57.7978,-615.395	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.864	0/1:318:156,162:156:5542:162:5788:-425.055,0,-403.181	0/0:161:152,9:152:5428:9:320:0,-19.3478,-459.529	0/0:163:161,2:161:5707:2:72:0,-42.2361,-506.916	0/1:608:286,322:286:10261:322:11472:-846.239,0,-740.385	0/0:422:420,0:420:15033:0:0:0,-126.433,-1352.33	0/0:442:441,1:441:15786:1:36:0,-129.461,-1416.83	0/1:770:371,399:371:13244:399:14231:-1044.8,0,-959.86	0/1:519:220,298:220:7870:298:10604:-795,0,-552.027	0/1:329:174,155:174:6191:155:5527:-398.207,0,-458.25	0/1:101:45,56:45:1588:56:2000:-149.348,0,-112.806	0/1:265:130,135:130:4641:135:4828:-353.46,0,-338.079	0/1:264:128,136:128:4574:136:4849:-356.123,0,-332.346	0/1:232:115,117:115:4096:117:4184:-305.287,0,-298.984	0/1:268:135,133:135:4835:133:4742:-344.693,0,-354.623	0/1:259:110,149:110:3900:149:5324:-400.894,0,-273.228	0/1:103:55,47:55:1944:47:1676:-119.92,0,-144.208	0/1:126:60,66:60:2102:66:2372:-175.471,0,-151.514	0/0:137:137,0:137:4789:0:0:0,-41.2411,-431.17	0/0:83:83,0:83:2973:0:0:0,-24.9855,-267.801	0/1:237:100,137:100:3506:137:4859:-365.856,0,-244.406	0/0:95:95,0:95:3376:0:0:0,-28.5978,-304.053	0/1:151:87,64:87:3088:64:2292:-160.92,0,-232.692	0/1:143:63,80:63:2232:80:2871:-215.494,0,-158.095	0/0:310:310,0:310:11074:0:0:0,-93.3193,-996.546	0/1:80:34,46:34:1224:46:1622:-121.924,0,-86.3846	0/0:90:90,0:90:3167:0:0:0,-27.0927,-285.2	0/1:350:185,165:185:6621:165:5841:-418.879,0,-490.607	0/1:218:102,116:102:3625:116:4148:-307.218,0,-260.055	0/1:90:46,44:46:1626:44:1572:-114.617,0,-119.533	0/1:361:170,191:170:6070:191:6798:-502.815,0,-437.729	0/0:168:168,0:168:6001:0:0:0,-50.573,-540.125	0/0:144:144,0:144:5148:0:0:0,-43.3483,-463.458	0/0:131:131,0:131:4665:0:0:0,-39.4349,-420.012	0/1:339:162,177:162:5808:177:6337:-467.111,0,-420.781	0/0:110:110,0:110:3873:0:0:0,-33.1133,-348.766	0/0:228:225,3:225:7953:3:108:0,-58.5597,-705.137	0/1:81:35,46:35:1237:46:1648:-123.902,0,-87.2489	0/0:115:115,0:115:4058:0:0:0,-34.6184,-365.409	0/1:254:135,119:135:4757:119:4252:-306.069,0,-351.737	0/1:153:38,115:38:1328:115:4086:-320.562,0,-73.7593	0/1:435:232,203:232:8327:203:7261:-519.999,0,-618.476	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:83:39,44:39:1387:44:1559:-115.584,0,-100.143	0/1:297:141,156:141:5068:156:5566:-410.091,0,-366.856	0/0:38:37,1:37:1328:1:36:0,-7.98465,-116.368	0/1:93:42,51:42:1512:51:1836:-137.148,0,-108.379	0/0:313:312,0:312:11126:0:0:0,-93.9214,-1000.86	0/0:187:187,0:187:6652:0:0:0,-56.2926,-598.761	0/1:66:38,28:38:1364:28:974:-67.6033,0,-103.193	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:739:739,0:739:26533:0:0:0,-222.461,-2387.19	0/0:178:177,1:177:6308:1:36:0,-49.9851,-564.218	0/1:113:55,58:55:1968:58:2049:-150.462,0,-143.379	0/1:406:195,211:195:6948:211:7526:-554.431,0,-503.169	0/1:111:66,45:66:2320:45:1616:-112.259,0,-175.644	0/1:170:88,82:88:3136:82:2927:-211.809,0,-231.29	0/0:121:121,0:121:4323:0:0:0,-36.4246,-389.232	0/1:241:127,114:127:4539:114:4071:-293.614,0,-336.126	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/1:457:250,207:250:8954:207:7400:-525.543,0,-668.266	0/1:731:361,370:361:12872:370:13246:-968.143,0,-938.244	0/1:135:40,95:40:1436:95:3375:-263.121,0,-88.8986	0/0:75:75,0:75:2648:0:0:0,-22.5772,-238.564	0/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chr07	7455418	.	GG	CG,CA	545776	PASS	AB=0.483108,0.514451;ABP=35.5085,26.7968;AC=135,53;AF=0.718085,0.281915;AN=188;AO=13931,6777;CIGAR=1X1M,2X;DP=20756;DPB=20759.5;DPRA=0,1.36802;EPP=30184.3,14710.4;EPPR=9.52472;GTI=0;LEN=1,2;MEANALT=2.10638,2.51562;MQM=59.9648,55.9568;MQMR=60;NS=94;NUMALT=2;ODDS=11.289;PAIRED=0,0;PAIREDR=0;PAO=3,4;PQA=104,140;PQR=0;PRO=0;QA=494537,238702;QR=75;RO=3;RPL=9086,4658;RPP=2806.56,2068.59;RPPR=3.73412;RPR=4845,2119;RUN=1,1;SAF=9094,4659;SAP=2827.76,2071.85;SAR=4837,2118;SRF=1;SRP=3.73412;SRR=2;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:131:0,67,64:0:0:67,64:2347,2229:-372.487,-181.517,-161.348,-191.319,0,-172.053	1/2:115:0,61,54:0:0:61,54:2171,1852:-327.41,-150.465,-132.102,-177.293,0,-161.038	1/2:257:0,130,126:0:0:130,126:4606,4398:-732.388,-357.168,-318.035,-375.211,0,-337.282	1/2:322:0,157,165:0:0:157,165:5582,5776:-924.325,-469.44,-422.179,-454.877,0,-405.207	1/1:95:0,95,0:0:0:95,0:3336,0:-300.458,-28.5979,0,-300.458,-28.5979,-300.458	1/1:74:0,74,0:0:0:74,0:2629,0:-236.848,-22.2762,0,-236.848,-22.2762,-236.848	1/1:180:0,178,1:0:0:178,1:6290,34:-565.849,-53.5833,0,-563.091,-50.8353,-562.79	1/2:219:0,113,106:0:0:113,106:4000,3654:-622.694,-296.869,-262.853,-326.174,0,-294.265	1/1:187:0,186,0:0:0:186,0:6566,0:-590.71,-55.9916,0,-590.71,-55.9916,-590.71	1/2:149:0,65,84:0:0:65,84:2249,2949:-422.902,-240.148,-220.581,-183.102,0,-157.815	1/1:342:0,342,0:0:0:342,0:12146,0:-1092.99,-102.952,0,-1092.99,-102.952,-1092.99	1/1:201:0,201,0:0:0:201,0:7078,0:-637.084,-60.507,0,-637.084,-60.507,-637.084	1/1:181:0,180,0:0:0:180,0:6398,0:-575.551,-54.1854,0,-575.551,-54.1854,-575.551	1/2:106:0,54,52:0:0:54,52:1935,1782:-302.48,-144.659,-128.404,-158.17,0,-142.517	1/2:129:0,67,62:0:0:67,62:2368,2133:-366.102,-173.257,-153.088,-193.194,0,-174.53	1/2:155:0,88,67:0:0:88,67:3118,2357:-445.319,-191.317,-164.826,-254.354,0,-234.185	1/1:77:0,77,0:0:0:77,0:2720,0:-245.041,-23.1793,0,-245.041,-23.1793,-245.041	1/1:93:0,92,0:0:0:92,0:3237,0:-291.193,-27.6948,0,-291.193,-27.6948,-291.193	1/2:219:0,132,87:0:0:132,87:4729,3088:-637.042,-251.368,-211.632,-386.031,0,-359.841	1/2:164:0,84,80:0:0:84,80:2964,2839:-472.592,-231.242,-205.956,-241.703,0,-217.621	1/1:224:0,220,2:0:0:220,2:7845,72:-705.718,-66.2266,0,-699.848,-60.3565,-699.246	1/2:91:0,23,68:0:0:23,68:824,2386:-261.336,-194.132,-187.208,-67.5596,0,-47.0896	1/1:226:0,223,3:0:0:223,3:7912,108:-711.75,-67.1297,0,-702.943,-57.9625,-702.039	1/2:142:0,81,61:0:0:81,61:2877,2164:-410.943,-176.514,-152.13,-234.784,0,-216.421	1/2:156:0,73,83:0:0:73,83:2562,2932:-446.924,-238.422,-216.447,-208.853,0,-183.868	1/2:275:0,137,138:0:0:137,138:4899,4885:-797.502,-398.038,-356.797,-399.82,0,-358.278	1/1:194:0,193,0:0:0:193,0:6785,0:-610.368,-58.0988,0,-610.368,-58.0988,-610.368	1/1:64:0,64,0:0:0:64,0:2251,0:-202.851,-19.2659,0,-202.851,-19.2659,-202.851	1/2:323:0,157,165:0:0:157,165:5542,5767:-920.168,-468.873,-421.611,-451.246,0,-401.576	1/1:164:0,155,9:0:0:155,9:5487,307:-493.616,-46.6597,0,-468.73,-21.432,-466.02	1/1:163:0,161,2:0:0:161,2:5684,72:-511.316,-48.4658,0,-505.445,-42.2361,-504.843	1/2:613:0,285,326:0:0:285,326:10189,11584:-1771.84,-941.05,-855.257,-830.783,0,-732.648	1/1:422:0,422,0:0:0:422,0:15070,0:-1356.02,-127.035,0,-1356.02,-127.035,-1356.02	1/1:459:0,454,5:0:0:454,5:16209,163:-1458.17,-136.668,0,-1445.3,-123.477,-1443.79	1/2:780:0,377,402:0:0:377,402:13420,14235:-2249.95,-1156.37,-1042.88,-1093.57,0,-972.56	1/2:529:0,220,305:0:0:220,305:7870,10818:-1520.24,-878.493,-812.267,-641.74,0,-549.926	1/2:329:0,174,155:0:0:174,155:6159,5388:-939.753,-438.068,-385.689,-502.035,0,-455.375	1/2:105:1,45,59:1:25:45,59:1612,2080:-298.201,-167.034,-155.435,-129.625,0,-113.811	1/2:331:0,162,169:0:0:162,169:5741,6015:-956.55,-488.864,-440.097,-468.041,0,-417.167	1/2:268:0,129,139:0:0:129,139:4612,4940:-777.918,-401.867,-363.034,-376.347,0,-334.504	1/2:241:0,119,122:0:0:119,122:4220,4247:-687.952,-344.15,-308.328,-344.152,0,-307.427	1/2:272:0,135,137:0:0:135,137:4830,4873:-789.156,-395.298,-354.659,-394.214,0,-352.973	1/2:268:0,115,152:0:0:115,152:4077,5329:-765.365,-433.219,-398.601,-332.14,0,-286.383	1/2:103:0,55,48:0:0:55,48:1949,1699:-297.386,-138.613,-122.056,-159.127,0,-144.678	1/2:128:0,61,67:0:0:61,67:2101,2399:-366.297,-195.658,-177.295,-170.989,0,-150.82	1/1:135:0,135,0:0:0:135,0:4786,0:-430.897,-40.6391,0,-430.897,-40.6391,-430.897	1/1:156:0,156,0:0:0:156,0:5545,0:-499.175,-46.9607,0,-499.175,-46.9607,-499.175	1/2:232:0,93,139:0:0:93,139:3280,4828:-659.719,-392.648,-364.652,-267.421,0,-225.578	1/1:94:0,93,0:0:0:93,0:3286,0:-295.6,-27.9958,0,-295.6,-27.9958,-295.6	1/2:154:0,88,65:0:0:88,65:3113,2277:-438.664,-185.108,-158.618,-253.547,0,-233.98	1/2:143:0,62,80:0:0:62,80:2184,2800:-405.529,-227.72,-209.056,-177.801,0,-153.718	1/1:307:0,306,0:0:0:306,0:10934,0:-983.594,-92.1152,0,-983.594,-92.1152,-983.594	1/2:173:0,78,94:0:0:78,94:2783,3297:-494.886,-268.009,-244.529,-226.87,0,-198.574	1/1:94:0,94,0:0:0:94,0:3312,0:-298.296,-28.2968,0,-298.296,-28.2968,-298.296	1/2:357:0,188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chr07	7547988	.	G	A	27014.4	PASS	AB=0.509715;ABP=6.42767;AC=55;AF=0.292553;AN=188;AO=2144;CIGAR=1X;DP=7353;DPB=7353;DPRA=1.15461;EPP=4658.65;EPPR=11309.9;GTI=3;LEN=1;MEANALT=1.03279;MQM=33.2323;MQMR=45.6966;NS=94;NUMALT=1;ODDS=0.229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76778;QR=186544;RO=5207;RPL=2144;RPP=4658.65;RPPR=11309.9;RPR=0;RUN=1;SAF=0;SAP=4658.65;SAR=2144;SRF=0;SRP=11309.9;SRR=5207;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:35,37:35:1256:37:1323:-77.3678,0,-89.7167	0/1:90:35,55:35:1237:55:1980:-124.448,0,-82.0336	0/1:161:79,82:79:2836:82:2952:-174.443,0,-200.324	0/1:163:73,90:73:2619:90:3236:-209.353,0,-184.424	0/0:37:37,0:37:1332:0:0:0,-11.1381,-118.26	0/0:54:54,0:54:1936:0:0:0,-16.2556,-171.275	0/0:114:114,0:114:4084:0:0:0,-34.3174,-362.54	0/1:94:51,43:51:1828:43:1540:-88.8403,0,-132.499	0/0:109:108,1:108:3872:1:36:0,-29.7577,-340.087	0/1:76:37,39:37:1324:39:1400:-89.8869,0,-94.8043	0/0:58:58,0:58:2080:0:0:0,-17.4597,-184.224	0/0:83:83,0:83:2979:0:0:0,-24.9855,-263.054	0/0:64:64,0:64:2300:0:0:0,-19.2659,-201.215	0/1:67:36,31:36:1284:31:1112:-68.3337,0,-93.9422	0/1:43:23,20:23:819:20:720:-43.5849,0,-59.6097	0/1:57:32,25:32:1152:25:900:-54.1098,0,-84.0106	0/0:72:71,1:71:2544:1:36:0,-18.6196,-219.497	0/0:40:40,0:40:1432:0:0:0,-12.0412,-126.729	0/1:51:30,21:30:1067:21:756:-41.9837,0,-77.9221	0/1:142:69,73:69:2476:73:2616:-164.287,0,-178.11	0/0:126:126,0:126:4505:0:0:0,-37.9298,-397.306	0/1:74:24,50:24:860:50:1788:-118.12,0,-53.9782	0/0:101:101,0:101:3632:0:0:0,-30.404,-323.571	0/1:105:56,49:56:2000:49:1756:-108.274,0,-145.822	0/1:22:18,4:18:648:4:129:-4.146,0,-51.5164	0/1:255:123,132:123:4424:132:4709:-291.061,0,-314.647	0/0:158:157,1:157:5600:1:36:0,-44.3751,-488.805	0/0:40:40,0:40:1432:0:0:0,-12.0412,-128.059	0/1:151:81,69:81:2912:69:2476:-147.802,0,-212.935	0/0:129:124,5:124:4438:5:180:0,-24.1698,-377.562	0/0:119:119,0:119:4263:0:0:0,-35.8226,-378.668	0/1:6:2,4:2:72:4:144:-9.98803,0,-4.97076	0/0:15:15,0:15:540:0:0:0,-4.51545,-47.9648	0/0:6:6,0:6:212:0:0:0,-1.80618,-17.2718	0/1:4:3,1:3:108:1:36:-1.85042,0,-8.70605	0/1:6:3,3:3:108:3:108:-6.74653,0,-8.12966	0/1:189:94,95:94:3356:95:3408:-204.832,0,-241.827	0/1:124:67,57:67:2404:57:2048:-126.096,0,-177.08	0/1:52:26,26:26:936:26:928:-54.3968,0,-66.1292	0/1:2:1,1:1:36:1:36:-2.58556,0,-2.96475	0/1:93:54,39:54:1920:39:1404:-83.3884,0,-143.504	0/1:22:7,15:7:252:15:540:-36.1588,0,-16.2049	0/1:107:55,52:55:1967:52:1860:-114.019,0,-143.071	0/1:62:34,28:34:1216:28:1008:-61.983,0,-90.1554	0/1:55:32,23:32:1152:23:824:-48.9963,0,-86.2102	0/0:119:119,0:119:4264:0:0:0,-35.8226,-376.483	0/0:80:80,0:80:2872:0:0:0,-24.0824,-252.445	0/1:159:79,80:79:2821:80:2855:-179.465,0,-202.294	0/0:97:97,0:97:3476:0:0:0,-29.1999,-308.627	0/1:77:27,50:27:963:50:1796:-119.867,0,-62.8385	0/1:126:67,59:67:2408:59:2116:-126.461,0,-173.035	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.2699	0/1:114:62,52:62:2220:52:1856:-106.102,0,-162.798	0/0:54:54,0:54:1940:0:0:0,-16.2556,-171.563	1/1:2:0,2:0:0:2:72:-5.80362,-0.60206,0	0/1:78:37,41:37:1328:41:1460:-92.6493,0,-95.3079	0/1:38:24,14:24:856:14:496:-26.1067,0,-65.3298	0/1:3:2,1:2:72:1:36:-2.22055,0,-5.85828	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.7542	0/0:61:61,0:61:2192:0:0:0,-18.3628,-195.164	0/0:235:235,0:235:8428:0:0:0,-70.742,-749.941	1/1:1:0,1:0:0:1:36:-3.18762,-0.30103,0	0/0:106:105,1:105:3768:1:36:0,-28.8546,-330.934	0/0:135:130,5:130:4664:5:180:0,-25.976,-399.748	0/1:48:24,24:24:864:24:856:-54.3604,0,-62.9504	0/0:33:33,0:33:1188:0:0:0,-9.93399,-105.928	0/1:130:65,65:65:2332:65:2336:-145.473,0,-169.224	0/1:100:37,63:37:1332:63:2256:-149.251,0,-88.6862	0/1:32:21,11:21:756:11:396:-21.5881,0,-57.7354	0/0:79:79,0:79:2823:0:0:0,-23.7814,-247.923	0/1:77:36,41:36:1283:41:1459:-88.6301,0,-90.0805	0/1:15:5,10:5:176:10:356:-24.31,0,-11.542	0/0:86:86,0:86:3069:0:0:0,-25.8886,-270.661	0/1:65:30,35:30:1076:35:1252:-75.8019,0,-75.8176	0/0:153:153,0:153:5446:0:0:0,-46.0576,-481.541	0/0:93:93,0:93:3336:0:0:0,-27.9958,-296.806	0/1:84:41,43:41:1457:43:1544:-91.942,0,-103.154	0/0:59:59,0:59:2116:0:0:0,-17.7608,-186.436	0/0:10:10,0:10:356:0:0:0,-3.0103,-31.2826	0/0:50:49,1:49:1760:1:36:0,-12.7726,-154.041	0/1:62:17,45:17:612:45:1582:-102.228,0,-35.9833	0/1:141:64,77:64:2280:77:2764:-175.83,0,-160.659	0/1:87:51,36:51:1836:36:1292:-75.9433,0,-137.228	0/1:71:34,37:34:1220:37:1328:-84.913,0,-87.0998	0/0:65:65,0:65:2327:0:0:0,-19.5669,-205.448	0/1:121:56,64:56:2003:64:2284:-144.881,0,-141.477	0/0:29:29,0:29:1040:0:0:0,-8.72987,-91.6595	0/0:67:67,0:67:2394:0:0:0,-20.169,-211.966	0/0:76:75,1:75:2696:1:36:0,-19.8237,-234.776	0/1:32:13,19:13:468:19:669:-44.1905,0,-32.3972	0/1:103:51,52:51:1824:52:1856:-113.9,0,-129.716	0/1:61:19,42:19:684:42:1512:-101.912,0,-42.7787	0/0:71:71,0:71:2544:0:0:0,-21.3731,-225.992	0/0:80:80,0:80:2876:0:0:0,-24.0824,-256.181
chr07	7548140	.	GATT	AATT,AATC	135417	PASS	AB=0.48401,0.512183;ABP=11.7601,8.08956;AC=135,53;AF=0.718085,0.281915;AN=188;AO=4529,2030;CIGAR=1X3M,1X2M1X;DP=6582;DPB=6582;DPRA=23.5806,1.22069;EPP=9837.61,4411.1;EPPR=16.0391;GTI=2;LEN=1,4;MEANALT=1.77419,2.17544;MQM=56.0373,40.6631;MQMR=60;NS=94;NUMALT=2;ODDS=1.07475;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=161992,71576;QR=207;RO=6;RPL=4529,2030;RPP=9837.61,4411.1;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=0,0;SAP=9837.61,4411.1;SAR=4529,2030;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,16,16:0:0:16,16:563,564:-90.4981,-44.6751,-39.8586,-46.1694,0,-41.353	1/2:55:0,31,24:0:0:31,24:1116,861:-159.811,-68.912,-59.5801,-91.2538,0,-84.0291	1/2:145:0,59,85:0:0:59,85:2100,2976:-405.421,-234.582,-216.822,-170.898,0,-145.311	1/2:231:0,118,112:0:0:118,112:4210,3934:-650.091,-308.253,-272.731,-341.936,0,-308.22	1/1:61:0,61,0:0:0:61,0:2181,0:-196.274,-18.3628,0,-196.274,-18.3628,-196.274	1/1:40:0,39,1:0:0:39,1:1400,30:-125.965,-11.7402,0,-123.587,-9.06242,-123.286	1/1:65:0,65,0:0:0:65,0:2327,0:-209.031,-19.567,0,-209.031,-19.567,-209.031	1/2:116:0,59,56:0:0:59,56:2078,1945:-323.086,-154.05,-136.29,-169.022,0,-152.164	1/1:45:0,45,0:0:0:45,0:1596,0:-143.695,-13.5464,0,-143.695,-13.5464,-143.695	1/2:52:0,29,23:0:0:29,23:1040,793:-145.872,-61.1974,-52.4675,-85.0155,0,-78.0918	1/1:61:0,61,0:0:0:61,0:2166,0:-194.557,-18.3628,0,-194.557,-18.3628,-194.557	1/1:81:0,81,0:0:0:81,0:2895,0:-260.642,-24.3834,0,-260.642,-24.3834,-260.642	1/1:78:0,78,0:0:0:78,0:2800,0:-252.069,-23.4803,0,-252.069,-23.4803,-252.069	1/2:64:0,29,35:0:0:29,35:1040,1234:-182.99,-98.1996,-89.4697,-85.142,0,-74.6059	1/2:63:0,31,32:0:0:31,32:1108,1139:-179.513,-89.2333,-79.9013,-90.6291,0,-80.9961	1/2:48:0,27,21:0:0:27,21:968,743:-137.845,-58.9915,-50.8637,-79.203,0,-72.8814	1/1:31:0,30,0:0:0:30,0:1076,0:-96.8621,-9.0309,0,-96.8621,-9.0309,-96.8621	1/1:26:0,26,0:0:0:26,0:936,0:-84.5344,-7.82678,0,-84.5344,-7.82678,-84.5344	1/2:30:0,10,20:0:0:10,20:360,697:-84.9621,-55.5905,-52.5802,-29.7248,0,-23.7042	1/2:76:0,37,39:0:0:37,39:1328,1383:-216.661,-108.424,-97.286,-108.587,0,-96.8472	1/1:63:1,61,0:1:30:61,0:2180,0:-192.751,-15.9389,0,-193.052,-18.3628,-195.45	1/2:92:0,32,60:0:0:32,60:1148,2123:-253.919,-160.67,-151.037,-93.5965,0,-75.5347	1/1:71:0,70,1:0:0:70,1:2512,36:-225.226,-21.0721,0,-222.394,-17.8924,-222.093	1/2:21:0,13,8:0:0:13,8:464,287:-61.0207,-23.201,-19.2876,-38.1728,0,-35.7646	1/2:50:0,25,25:0:0:25,25:896,891:-144.275,-71.3287,-63.8029,-73.2994,0,-65.7737	1/2:196:1,98,97:1:36:98,97:3491,3413:-541.917,-258.327,-231.764,-280.937,0,-254.675	1/1:171:0,170,0:0:0:170,0:6105,0:-548.487,-51.1751,0,-548.487,-51.1751,-548.487	1/1:36:0,36,0:0:0:36,0:1292,0:-116.552,-10.8371,0,-116.552,-10.8371,-116.552	1/2:245:0,111,134:0:0:111,134:3966,4736:-681.056,-359.291,-325.877,-322.11,0,-281.772	1/1:121:0,116,4:0:0:116,4:4145,141:-372.522,-34.9195,0,-361.287,-23.6306,-360.083	1/1:92:0,92,0:0:0:92,0:3291,0:-295.914,-27.6948,0,-295.914,-27.6948,-295.914	1/2:12:0,7,5:0:0:7,5:252,180:-35.2515,-14.6915,-12.5843,-20.9153,0,-19.4102	1/1:23:0,22,1:0:0:22,1:792,36:-71.1643,-6.62266,0,-68.2967,-3.40268,-67.9957	1/1:9:0,9,0:0:0:9,0:324,0:-29.4532,-2.70927,0,-29.4532,-2.70927,-29.4532	2/2:3:0,0,3:0:0:0,3:0,101:-9.27352,-9.27352,-9.27352,-0.90309,-0.90309,0	1/2:15:0,9,5:0:0:9,5:320,173:-39.833,-13.7546,-11.0453,-26.073,0,-24.5678	1/2:164:0,79,85:0:0:79,85:2823,3016:-455.701,-226.682,-202.901,-229.362,0,-203.774	1/2:132:0,54,78:0:0:54,78:1933,2784:-378.081,-221.006,-204.75,-157.428,0,-133.948	1/2:60:1,28,31:1:35:28,31:1004,1094:-164.437,-82.8796,-77.2988,-79.0111,0,-72.5266	1/1:2:0,2,0:0:0:2,0:72,0:-6.83481,-0.60206,0,-6.83481,-0.60206,-6.83481	1/2:72:0,34,38:0:0:34,38:1220,1340:-204.48,-105.006,-94.7712,-99.8233,0,-88.3842	1/2:24:0,11,13:0:0:11,13:396,452:-68.2661,-35.9618,-32.6504,-32.6541,0,-28.7407	1/2:90:0,51,39:0:0:51,39:1836,1386:-260.361,-110.757,-95.4042,-149.957,0,-138.217	1/2:35:0,18,17:0:0:18,17:644,603:-98.976,-46.5346,-41.116,-52.7874,0,-47.6699	1/2:51:0,30,20:0:0:30,20:1063,694:-139.931,-53.7581,-44.7272,-86.2587,0,-80.2381	1/1:50:0,50,0:0:0:50,0:1784,0:-160.339,-15.0515,0,-160.339,-15.0515,-160.339	1/1:92:0,92,0:0:0:92,0:3291,0:-296.133,-27.6948,0,-296.133,-27.6948,-296.133	1/2:97:0,52,44:0:0:52,44:1860,1535:-271.043,-119.481,-103.828,-151.548,0,-138.303	1/1:44:0,44,0:0:0:44,0:1570,0:-141.441,-13.2453,0,-141.441,-13.2453,-141.441	1/2:97:0,44,53:0:0:44,53:1563,1860:-272.138,-144.87,-131.624,-127.615,0,-111.661	1/2:80:0,42,38:0:0:42,38:1508,1349:-225.655,-103.058,-90.4149,-122.942,0,-111.503	1/1:5:0,5,0:0:0:5,0:180,0:-16.5401,-1.50515,0,-16.5401,-1.50515,-16.5401	1/2:121:0,44,77:0:0:44,77:1580,2713:-342.728,-213.956,-200.711,-129.124,0,-105.945	1/1:55:0,55,0:0:0:55,0:1963,0:-176.455,-16.5567,0,-176.455,-16.5567,-176.455	1/2:5:0,2,1:0:0:2,1:72,36:-8.76316,-2.87855,-2.27649,-5.89284,0,-5.59181	1/2:104:0,55,49:0:0:55,49:1976,1733:-298.872,-138.087,-121.53,-161.137,0,-146.387	1/2:17:0,7,10:0:0:7,10:243,357:-47.6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chr07	7574190	.	TGACT	TGACC,AGACC	63285.6	PASS	AB=0.499782,0.493676;ABP=3.01219,4.60315;AC=137,51;AF=0.728723,0.271277;AN=188;AO=5898,2282;CIGAR=4M1X,1X3M1X;DP=8243;DPB=8252.8;DPRA=22.1478,1.43324;EPP=12801.7,4958.31;EPPR=18.2106;GTI=2;LEN=1,5;MEANALT=2.16129,2.65517;MQM=21.2708,20.4838;MQMR=37.2857;NS=94;NUMALT=2;ODDS=0.642217;PAIRED=0,0;PAIREDR=0;PAO=23.5,25.5;PQA=662.5,734.5;PQR=0;PRO=0;QA=205985,78827;QR=252;RO=7;RPL=5897,2282;RPP=12801.7,4958.31;RPPR=18.2106;RPR=1,0;RUN=1,1;SAF=5898,2282;SAP=12810.4,4958.31;SAR=0,0;SRF=7;SRP=18.2106;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:21:0,10,11:0:0:10,11:338,376:-31.9746,-16.5035,-13.4932,-15.673,0,-12.3616	1/2:152:0,68,83:0:0:68,83:2366,2826:-221.939,-118.082,-97.6121,-103.757,0,-78.7717	1/2:107:0,49,57:0:0:49,57:1714,1990:-159.506,-84.0995,-69.3491,-75.4134,0,-58.2547	1/2:240:0,120,120:0:0:120,120:4224,4116:-364.98,-175.827,-139.703,-189.356,0,-153.232	1/1:34:0,34,0:0:0:34,0:1188,0:-62.4528,-10.235,0,-62.4528,-10.235,-62.4528	1/1:40:0,40,0:0:0:40,0:1389,0:-74.7898,-12.0412,0,-74.7898,-12.0412,-74.7898	1/1:108:0,106,0:0:0:106,0:3726,0:-197.301,-31.9092,0,-197.301,-31.9092,-197.301	1/2:69:0,36,33:0:0:36,33:1275,1131:-102.694,-47.0207,-36.1836,-55.8715,0,-45.9375	1/1:111:0,111,0:0:0:111,0:3867,0:-205.817,-33.4143,0,-205.817,-33.4143,-205.817	1/2:145:0,71,74:0:0:71,74:2469,2554:-219.401,-110.464,-89.0907,-109.138,0,-86.862	1/1:40:0,40,0:0:0:40,0:1415,0:-74.2367,-12.0412,0,-74.2367,-12.0412,-74.2367	1/1:59:0,59,0:0:0:59,0:2018,0:-108.679,-17.7608,0,-108.679,-17.7608,-108.679	1/1:56:0,56,0:0:0:56,0:1941,0:-96.5595,-16.8577,0,-96.5595,-16.8577,-96.5595	1/2:65:0,37,28:0:0:37,28:1278,980:-96.7825,-41.0817,-29.9436,-55.8986,0,-47.4697	1/2:61:0,30,30:0:0:30,30:1054,1043:-92.1329,-44.1726,-35.1417,-47.908,0,-38.8771	1/2:35:0,14,20:0:0:14,20:482,680:-52.0842,-30.2594,-26.045,-21.8721,0,-15.8515	1/1:60:0,60,0:0:0:60,0:2079,0:-108.934,-18.0618,0,-108.934,-18.0618,-108.934	1/1:48:0,47,0:0:0:47,0:1593,0:-88.0326,-14.1484,0,-88.0326,-14.1484,-88.0326	1/2:28:0,11,17:0:0:11,17:374,575:-41.1285,-23.9428,-20.6315,-17.3855,0,-12.268	1/2:198:0,96,101:0:0:96,101:3391,3486:-304.652,-150.623,-121.724,-153.917,0,-123.513	1/1:193:0,192,0:0:0:192,0:6724,0:-359.549,-57.7978,0,-359.549,-57.7978,-359.549	1/2:51:0,17,32:0:0:17,32:608,1101:-81.5127,-52.2977,-47.1802,-29.1983,0,-19.5653	1/1:97:0,95,1:0:0:95,1:3327,23:-177.682,-28.5979,0,-176.34,-27.3101,-176.039	1/2:102:0,63,38:0:0:63,38:2214,1321:-156.586,-56.3986,-37.4337,-100.192,0,-88.7529	1/2:32:0,17,15:0:0:17,15:608,507:-48.8167,-22.0199,-16.9024,-26.9982,0,-22.4828	1/2:263:0,119,141:0:0:119,141:4196,4860:-436.958,-232.231,-196.408,-204.662,0,-162.217	1/1:204:0,203,0:0:0:203,0:7117,0:-376.068,-61.1091,0,-376.068,-61.1091,-376.068	1/1:40:0,40,0:0:0:40,0:1367,0:-73.0166,-12.0412,0,-73.0166,-12.0412,-73.0166	1/2:226:0,133,92:0:0:133,92:4681,3206:-374.218,-148.308,-108.271,-225.908,0,-198.213	1/1:155:0,145,5:0:0:145,5:5064,174:-270.979,-43.6494,0,-262.637,-35.2908,-261.132	1/1:79:0,77,0:0:0:77,0:2719,0:-144.766,-23.1793,0,-144.766,-23.1793,-144.766	1/2:2:0,1,1:0:0:1,1:36,36:-2.52085,-1.6883,-1.38727,-0.996907,0,-0.695877	1/1:5:0,5,0:0:0:5,0:171,0:-9.78572,-1.50515,0,-9.78572,-1.50515,-9.78572	1/1:3:0,3,0:0:0:3,0:108,0:-5.84244,-0.90309,0,-5.84244,-0.90309,-5.84244	2/2:4:0,0,4:0:0:0,4:0,142:-7.3555,-7.3555,-7.3555,-1.20412,-1.20412,0	1/1:1:0,1,0:0:0:1,0:36,0:-2.08658,-0.30103,0,-2.08658,-0.30103,-2.08658	1/2:213:0,125,87:0:0:125,87:4314,3000:-349.477,-142.15,-104.521,-207.254,0,-181.065	1/2:91:0,53,35:0:0:53,35:1845,1209:-132.224,-52.9911,-37.0365,-79.2249,0,-68.6889	1/2:58:0,31,27:0:0:31,27:1104,910:-87.2431,-40.2807,-30.9488,-47.1623,0,-39.0345	1/1:2:0,2,0:0:0:2,0:57,0:-2.41018,-0.60206,0,-2.41018,-0.60206,-2.41018	1/2:137:0,71,65:0:0:71,65:2489,2251:-208.415,-96.3504,-74.9772,-112.081,0,-92.5136	1/2:18:0,10,8:0:0:10,8:356,264:-27.0176,-11.974,-8.9637,-15.2422,0,-12.8339	1/2:96:0,47,47:0:0:47,47:1654,1626:-140.961,-68.5864,-54.4379,-72.4004,0,-58.252	1/2:89:0,33,54:0:0:33,54:1154,1875:-132.08,-81.1838,-71.2498,-50.8485,0,-34.5929	1/2:71:0,42,29:0:0:42,29:1467,997:-107.155,-43.1237,-30.4805,-64.2307,0,-55.5009	1/1:63:3,60,0:3:108:60,0:2111,0:-110.406,-9.45893,0,-111.309,-18.0618,-119.656	1/1:83:0,82,0:0:0:82,0:2825,0:-150.934,-24.6845,0,-150.934,-24.6845,-150.934	1/2:145:0,81,64:0:0:81,64:2855,2217:-224.915,-95.1406,-70.7572,-129.802,0,-110.536	1/1:93:1,90,1:1:36:90,1:3161,22:-164.821,-24.4169,0,-163.814,-25.8512,-166.182	1/2:144:0,59,83:0:0:59,83:2037,2898:-215.453,-123.13,-105.369,-92.3309,0,-67.3454	1/2:128:0,68,58:0:0:68,58:2392,2010:-212.347,-95.0672,-74.5971,-117.329,0,-99.8688	1/1:6:0,6,0:0:0:6,0:212,0:-10.9293,-1.80618,0,-10.9293,-1.80618,-10.9293	1/2:86:0,57,29:0:0:57,29:2014,1020:-131.861,-43.0882,-25.9295,-88.9734,0,-80.2436	1/1:33:0,33,0:0:0:33,0:1129,0:-66.0769,-9.93399,0,-66.0769,-9.93399,-66.0769	1/1:8:0,7,1:0:0:7,1:252,36:-13.154,-2.10721,0,-11.6658,-0.418908,-11.3648	1/2:126:0,66,58:0:0:66,58:2310,2003:-185.653,-84.2891,-64.4212,-101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chr07	7716460	.	T	C	220972	PASS	AB=0.456625;ABP=178.765;AC=135;AF=0.718085;AN=188;AO=11306;CIGAR=1X;DP=17186;DPB=17186;DPRA=0;EPP=24536.3;EPPR=12749.6;GTI=2;LEN=1;MEANALT=1.09574;MQM=59.9847;MQMR=59.9913;NS=94;NUMALT=1;ODDS=3.24446;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=396835;QR=209874;RO=5870;RPL=2;RPP=24536.3;RPPR=12749.6;RPR=11304;RUN=1;SAF=0;SAP=24553.7;SAR=11306;SRF=0;SRP=12749.6;SRR=5870;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/1:129:62,67:62:2220:67:2391:-176.614,0,-161.232	0/1:97:56,41:56:2016:41:1439:-100.605,0,-152.513	0/1:188:101,87:101:3609:87:3030:-216.337,0,-268.421	1/1:75:0,75:0:0:75:2643:-238.118,-22.5773,0	1/1:45:0,45:0:0:45:1553:-140.056,-13.5464,0	1/1:83:0,83:0:0:83:2919:-262.943,-24.9855,0	0/1:130:62,67:62:2232:67:2361:-173.553,0,-161.951	1/1:78:0,78:0:0:78:2740:-246.844,-23.4803,0	0/1:82:49,33:49:1756:33:1146:-78.7598,0,-133.64	1/1:267:0,267:0:0:267:9209:-828.822,-80.375,0	1/1:60:0,58:0:0:58:1982:-178.288,-17.4597,0	0/1:61:26,35:26:923:35:1205:-90.3876,0,-65.0239	0/1:68:38,30:38:1360:30:1048:-74.16,0,-102.231	0/1:43:21,22:21:748:22:750:-54.8681,0,-54.701	0/1:54:29,25:29:1023:25:871:-62.4498,0,-76.1261	1/1:76:0,76:0:0:76:2652:-238.927,-22.8783,0	1/1:51:0,51:0:0:51:1786:-161.021,-15.3525,0	0/1:165:74,91:74:2644:91:3177:-236.487,0,-188.537	0/1:141:86,55:86:3088:55:1941:-132.519,0,-235.702	1/1:70:1,69:1:36:69:2442:-216.437,-17.4738,0	0/1:91:66,25:66:2364:25:900:-53.9273,0,-185.625	1/1:100:2,98:2:68:98:3491:-307.944,-23.6453,0	0/1:51:28,23:28:1000:23:784:-55.3279,0,-74.9628	0/1:51:29,22:29:1036:22:784:-55.5314,0,-78.2014	0/1:274:152,122:152:5426:122:4267:-301.725,0,-405.987	1/1:122:0,122:0:0:122:4333:-390.147,-36.7257,0	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	0/1:221:127,94:127:4551:94:3323:-232.761,0,-343.228	1/1:210:7,203:7:252:203:7170:-622.334,-40.1873,0	1/1:115:0,115:0:0:115:4090:-368.289,-34.6185,0	0/1:652:368,284:368:13179:284:10001:-703.547,0,-989.64	1/1:475:1,474:1:32:474:16687:-1498.32,-139.79,0	1/1:891:0,891:0:0:891:31282:-2814.43,-268.218,0	0/1:829:447,382:447:15974:382:13451:-960.851,0,-1187.79	0/1:637:369,268:369:13212:268:9448:-658.541,0,-997.126	0/1:149:70,79:70:2503:79:2741:-202.081,0,-180.668	0/1:209:107,102:107:3821:102:3576:-259.132,0,-281.17	0/1:372:195,177:195:6939:177:6127:-439.566,0,-512.595	0/1:370:186,184:186:6641:184:6464:-470.476,0,-486.388	0/1:157:73,84:73:2628:84:2993:-222.339,0,-189.505	0/1:229:138,91:138:4918:91:3131:-213.087,0,-373.836	0/1:130:42,88:42:1472:88:3063:-236.768,0,-93.6378	0/1:56:29,27:29:1035:27:940:-68.0559,0,-76.6051	0/1:41:23,18:23:828:18:640:-45.5871,0,-62.5019	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	1/1:97:2,95:2:72:95:3371:-296.771,-22.3632,0	0/1:203:104,99:104:3728:99:3505:-254.55,0,-274.611	1/1:117:2,115:2:72:115:4090:-361.45,-28.3838,0	0/1:122:72,50:72:2588:50:1783:-124.026,0,-196.443	0/1:151:83,68:83:2984:68:2386:-169.511,0,-223.336	1/1:610:2,607:2:72:607:21377:-1916.59,-176.85,0	0/1:96:59,37:59:2103:37:1312:-89.4822,0,-160.64	1/1:69:0,69:0:0:69:2447:-220.485,-20.7711,0	0/1:928:504,424:504:18028:424:14931:-1064.19,0,-1342.74	0/1:99:63,36:63:2260:36:1244:-82.4569,0,-173.861	0/1:41:18,23:18:644:23:824:-62.1411,0,-45.9484	0/1:445:251,193:251:8965:193:6828:-480.579,0,-672.815	1/1:516:3,513:3:108:513:18120:-1620.33,-145.256,0	1/1:83:0,82:0:0:82:2896:-260.516,-24.6845,0	1/1:95:0,95:0:0:95:3310:-298.121,-28.5979,0	0/1:339:185,154:185:6624:154:5433:-387.053,0,-494.19	1/1:123:1,122:1:36:122:4288:-382.502,-33.4284,0	1/1:156:1,155:1:36:155:5459:-487.474,-43.3624,0	0/1:71:34,37:34:1205:37:1313:-97.0966,0,-87.3808	1/1:80:0,79:0:0:79:2803:-252.151,-23.7814,0	0/1:174:104,70:104:3736:70:2466:-169.814,0,-283.833	0/1:85:61,24:61:2176:24:856:-51.7736,0,-170.519	1/1:194:0,194:0:0:194:6721:-604.988,-58.3998,0	1/1:66:0,66:0:0:66:2326:-209.597,-19.868,0	0/1:79:38,41:38:1364:41:1435:-105.664,0,-99.2793	0/1:588:346,242:346:12395:242:8538:-591.422,0,-938.379	1/1:63:0,63:0:0:63:2229:-200.873,-18.9649,0	0/1:70:50,20:50:1796:20:712:-43.3346,0,-140.85	1/1:115:1,113:1:36:113:3959:-352.906,-31.079,0	1/1:110:1,109:1:36:109:3835:-341.749,-29.515,0	0/1:135:70,65:70:2499:65:2275:-164.366,0,-184.523	1/1:79:0,79:0:0:79:2760:-248.639,-23.7814,0	1/1:692:2,689:2:72:689:24264:-2176.3,-201.535,0	1/1:92:0,92:0:0:92:3244:-292.183,-27.6948,0	0/1:59:40,19:40:1420:19:680:-43.7684,0,-110.337	0/1:133:81,52:81:2900:52:1789:-121.251,0,-221.199	0/1:87:39,48:39:1387:48:1639:-121.602,0,-98.9385	0/1:49:25,24:25:896:24:844:-61.5285,0,-66.2099	1/1:63:0,63:0:0:63:2186:-197.004,-18.9649,0	0/1:123:62,61:62:2187:61:2050:-147.739,0,-160.067	1/1:37:0,37:0:0:37:1274:-114.959,-11.1381,0	1/1:65:0,65:0:0:65:2232:-201.142,-19.567,0	1/1:54:0,53:0:0:53:1810:-162.818,-15.9546,0	0/1:306:159,147:159:5666:147:5058:-363.271,0,-417.946	0/1:622:296,326:296:10561:326:11254:-825.556,0,-763.166	0/1:62:39,23:39:1404:23:770:-50.9444,0,-107.995	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:57:2,55:2:72:55:1911:-165.431,-10.322,0
chr07	8005143	.	CTGTTCGT	TTGTCCGT,CTGTCCGT	171098	PASS	AB=0.487411,0.502475;ABP=9.40696,3.25749;AC=134,54;AF=0.712766,0.287234;AN=188;AO=5736,2351;CIGAR=1X3M1X3M,4M1X3M;DP=8166;DPB=8167.88;DPRA=87.7957,1.12959;EPP=12458.6,5099.46;EPPR=9.52472;GTI=2;LEN=8,1;MEANALT=2.36559,2.73333;MQM=59.9622,59.9915;MQMR=60;NS=94;NUMALT=2;ODDS=5.0218;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=87,0;PQR=0;PRO=0;QA=203799,84049;QR=103;RO=3;RPL=5736,2351;RPP=12458.6,5108.14;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,1;SAP=12458.6,5099.46;SAR=5736,2350;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:16:0,4,12:0:0:4,12:132,428:-45.9116,-35.2464,-34.0423,-11.0017,0,-7.38933	1/2:90:0,47,43:0:0:47,43:1664,1529:-260.501,-124.957,-110.808,-135.899,0,-122.955	1/2:76:0,34,41:0:0:34,41:1215,1457:-217.787,-118.722,-108.487,-99.0617,0,-86.7195	1/2:130:0,68,60:0:0:68,60:2429,2121:-370.777,-172.736,-152.266,-198.037,0,-179.975	1/1:34:0,34,0:0:0:34,0:1196,0:-107.837,-10.235,0,-107.837,-10.235,-107.837	1/1:52:0,50,0:0:0:50,0:1773,0:-159.494,-15.0515,0,-159.494,-15.0515,-159.494	1/1:89:0,88,0:0:0:88,0:3118,0:-280.594,-26.4906,0,-280.594,-26.4906,-280.594	1/2:165:1,80,83:1:32:80,83:2825,2942:-466.591,-237.109,-215.604,-227.219,0,-204.811	1/1:88:0,86,0:0:0:86,0:3072,0:-276.384,-25.8886,0,-276.384,-25.8886,-276.384	1/2:113:0,53,58:0:0:53,58:1879,2065:-321.379,-168.3,-152.345,-153.074,0,-135.615	1/1:49:0,49,0:0:0:49,0:1746,0:-157.422,-14.7505,0,-157.422,-14.7505,-157.422	1/1:88:0,87,0:0:0:87,0:3108,0:-279.588,-26.1896,0,-279.588,-26.1896,-279.588	1/2:78:0,46,32:0:0:46,32:1645,1144:-227.771,-93.6366,-79.7892,-134.492,0,-124.859	1/2:69:0,39,30:0:0:39,30:1384,1080:-201.244,-88.4823,-76.7422,-113.119,0,-104.088	1/2:76:0,41,35:0:0:41,35:1469,1234:-220.635,-100.827,-88.4844,-120.164,0,-109.628	1/2:54:0,30,24:0:0:30,24:1078,860:-158.441,-70.4971,-61.4662,-88.3023,0,-81.0776	1/1:85:0,85,0:0:0:85,0:2988,0:-269.154,-25.5876,0,-269.154,-25.5876,-269.154	1/1:78:0,78,0:0:0:78,0:2780,0:-250.441,-23.4803,0,-250.441,-23.4803,-250.441	1/2:47:0,31,16:0:0:31,16:1089,576:-135.987,-47.3585,-38.0266,-88.9858,0,-84.1694	1/2:252:0,123,125:0:0:123,125:4362,4480:-720.755,-365.38,-328.354,-355.371,0,-317.742	1/1:127:0,127,0:0:0:127,0:4470,0:-402.475,-38.2308,0,-402.475,-38.2308,-402.475	1/2:89:0,18,71:0:0:18,71:627,2540:-258.464,-207.478,-202.059,-51.3363,0,-29.9631	1/1:51:0,51,0:0:0:51,0:1816,0:-163.721,-15.3525,0,-163.721,-15.3525,-163.721	1/2:26:0,12,14:0:0:12,14:430,496:-75.8314,-40.7598,-37.1475,-35.4278,0,-31.2134	1/2:41:0,28,12:0:0:28,12:994,432:-116.236,-35.249,-26.8202,-80.9856,0,-77.3733	1/2:245:0,119,123:0:0:119,123:4230,4404:-703.825,-359.126,-323.304,-344.676,0,-307.649	1/1:227:0,225,0:0:0:225,0:7988,0:-718.633,-67.7318,0,-718.633,-67.7318,-718.633	1/1:42:0,41,0:0:0:41,0:1452,0:-130.625,-12.3422,0,-130.625,-12.3422,-130.625	1/2:163:0,62,100:0:0:62,100:2179,3577:-469.03,-291.673,-273.009,-177.352,0,-147.249	1/1:222:0,214,8:0:0:214,8:7568,284:-680.792,-64.4204,0,-657.651,-40.9253,-655.243	1/1:132:0,128,2:0:0:128,2:4517,72:-406.375,-38.5318,0,-400.5,-32.6246,-399.898	1/2:3:0,1,2:0:0:1,2:36,68:-8.79971,-5.85565,-5.55462,-3.29724,0,-2.69518	1/1:22:0,18,0:0:0:18,0:636,0:-57.2238,-5.41854,0,-57.2238,-5.41854,-57.2238	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/2:255:0,133,122:0:0:133,122:4747,4392:-745.719,-358.725,-318.688,-387.353,0,-350.627	1/2:132:0,67,63:0:0:67,63:2367,2252:-376.383,-183.619,-163.45,-192.76,0,-173.795	1/2:71:0,34,36:0:0:34,36:1213,1288:-203.911,-105.027,-94.7917,-98.8818,0,-88.0448	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:151:0,80,71:0:0:80,71:2861,2525:-439.416,-206.127,-182.045,-233.645,0,-212.272	1/2:45:0,21,24:0:0:21,24:748,860:-131.464,-70.4971,-64.1755,-61.3235,0,-54.0988	1/2:56:0,30,25:0:0:30,25:1077,892:-160.569,-72.7142,-63.6833,-87.8524,0,-80.3267	1/2:87:0,50,37:0:0:50,37:1788,1328:-254.477,-108.684,-93.6326,-146.151,0,-135.013	1/2:73:0,40,32:0:0:40,32:1433,1152:-210.865,-93.9974,-81.9562,-116.867,0,-107.234	1/1:66:0,64,1:0:0:64,1:2278,36:-204.922,-19.2659,0,-201.985,-16.3285,-201.684	1/1:134:0,132,0:0:0:132,0:4695,0:-422.348,-39.736,0,-422.348,-39.736,-422.348	1/2:104:0,48,54:0:0:48,54:1695,1913:-293.888,-155.856,-141.407,-138.054,0,-121.799	1/1:104:0,103,0:0:0:103,0:3650,0:-328.398,-31.0061,0,-328.398,-31.0061,-328.398	1/2:106:0,50,55:0:0:50,55:1772,1972:-305.214,-160.858,-145.806,-144.371,0,-127.815	1/2:66:0,38,28:0:0:38,28:1327,998:-189.642,-81.7053,-70.2662,-108.29,0,-99.8607	1/1:19:0,19,0:0:0:19,0:682,0:-61.7099,-5.71957,0,-61.7099,-5.71957,-61.7099	1/2:307:0,147,156:0:0:147,156:5257,5582:-883.864,-455.205,-410.954,-428.681,0,-381.72	1/1:34:0,34,0:0:0:34,0:1205,0:-108.756,-10.235,0,-108.756,-10.235,-108.756	1/2:30:0,15,15:0:0:15,15:518,540:-86.4985,-44.4211,-39.9056,-42.4299,0,-37.9145	1/2:111:0,53,57:0:0:53,57:1861,2023:-316.353,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chr07	8006360	.	C	A	27010	PASS	AB=0.475723;ABP=20.7235;AC=52;AF=0.27957;AN=186;AO=1663;CIGAR=1X;DP=6048;DPB=6048;DPRA=1.26275;EPP=3596.82;EPPR=9509.72;GTI=3;LEN=1;MEANALT=1.05;MQM=60;MQMR=59.9991;NS=93;NUMALT=1;ODDS=2.37013;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59209;QR=156021;RO=4382;RPL=0;RPP=3614.17;RPPR=9518.4;RPR=1663;RUN=1;SAF=2;SAP=3596.82;SAR=1661;SRF=1;SRP=9509.72;SRR=4381;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:19,29:19:684:29:1036:-79.1045,0,-47.4409	0/1:39:26,13:26:936:13:468:-30.7195,0,-72.8193	0/1:106:71,35:71:2536:35:1256:-81.4361,0,-196.582	0/1:113:58,55:58:2051:55:1960:-142.659,0,-150.845	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:104:103,1:103:3649:1:36:0,-27.7088,-325.015	0/1:39:20,19:20:716:19:676:-49.4278,0,-53.0275	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/1:49:31,18:31:1104:18:635:-42.7265,0,-84.9202	0/0:65:65,0:65:2296:0:0:0,-19.5669,-206.9	0/0:114:114,0:114:4072:0:0:0,-34.3174,-366.668	0/1:73:37,36:37:1316:36:1276:-93.1679,0,-96.7666	0/1:37:15,22:15:532:22:762:-57.7595,0,-37.075	0/1:87:40,47:40:1419:47:1671:-124.487,0,-101.817	0/1:62:33,29:33:1153:29:1036:-74.8901,0,-85.4101	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.499	0/1:39:29,10:29:1032:10:360:-21.0041,0,-81.4533	0/1:129:83,46:83:2937:46:1636:-108.696,0,-225.732	0/0:121:121,0:121:4289:0:0:0,-36.4246,-386.19	0/1:87:41,46:41:1468:46:1643:-121.968,0,-106.226	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:35:17,18:17:612:18:648:-48.1158,0,-44.8774	0/1:67:34,33:34:1205:33:1152:-83.8144,0,-88.5849	0/1:137:66,71:66:2336:71:2516:-185.449,0,-169.257	0/0:218:218,0:218:7783:0:0:0,-65.6245,-700.5	0/0:44:44,0:44:1551:0:0:0,-13.2453,-139.881	0/1:201:90,111:90:3224:111:3992:-298.961,0,-229.875	0/0:71:68,3:68:2428:3:108:0,-11.298,-208.701	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.799	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:16:13,3:13:464:3:108:-5.25869,0,-37.281	0/1:244:114,130:114:4079:130:4633:-343.682,0,-293.844	0/1:62:39,23:39:1392:23:809:-54.4644,0,-106.915	0/1:51:27,24:27:972:24:864:-62.73,0,-72.4454	.:.:.:.:.:.:.:.	0/1:83:62,21:62:2209:21:756:-43.3817,0,-174.088	0/1:36:18,18:18:640:18:648:-47.8148,0,-47.0922	0/1:85:42,43:42:1489:43:1532:-112.586,0,-108.715	0/1:53:29,24:29:1040:24:856:-61.4065,0,-77.9598	0/1:61:28,32:28:981:32:1139:-84.3969,0,-70.1795	0/0:89:87,1:87:3078:1:36:0,-23.2522,-273.651	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:69:38,31:38:1364:31:1112:-79.6203,0,-102.29	0/0:87:87,0:87:3079:0:0:0,-26.1896,-277.338	0/1:48:33,14:33:1172:14:504:-31.3297,0,-91.4248	0/1:36:16,20:16:576:20:720:-54.2917,0,-41.3379	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:30:17,13:17:612:13:464:-33.0666,0,-46.3825	0/0:49:49,0:49:1739:0:0:0,-14.7505,-156.794	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:88:55,33:55:1960:33:1175:-79.5663,0,-150.185	0/1:36:21,15:21:748:15:531:-37.2848,0,-56.8082	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:33:33,0:33:1179:0:0:0,-9.93399,-106.417	0/0:100:100,0:100:3559:0:0:0,-30.103,-320.519	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:108:107,1:107:3798:1:36:0,-28.913,-338.422	0/0:113:112,1:112:3991:1:36:0,-30.4181,-355.783	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/1:80:44,36:44:1556:36:1266:-90.1587,0,-116.247	0/1:77:34,43:34:1190:43:1525:-114.362,0,-84.2242	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/1:51:22,29:22:788:29:1022:-76.9383,0,-55.8923	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/1:59:36,23:36:1296:23:828:-57.0833,0,-99.1832	0/0:78:76,2:76:2677:2:72:0,-16.6436,-234.336	0/0:87:87,0:87:3096:0:0:0,-26.1896,-278.866	0/1:92:44,48:44:1572:48:1724:-127.751,0,-114.077	0/0:39:37,2:37:1308:2:72:0,-4.90345,-111.185	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:52:51,1:51:1807:1:36:0,-12.0553,-159.313	0/1:64:34,30:34:1220:30:1076:-77.8869,0,-90.8409	0/1:141:79,62:79:2802:62:2211:-156.809,0,-209.975	0/1:73:38,35:38:1368:35:1229:-88.9367,0,-101.446	0/1:82:38,44:38:1338:44:1532:-113.482,0,-96.034	0/0:48:48,0:48:1692:0:0:0,-14.4494,-152.563	0/1:137:63,74:63:2244:74:2617:-194.536,0,-160.983	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.04	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:38:21,17:21:752:17:608:-43.6129,0,-56.5671	0/1:71:43,28:43:1544:28:1004:-69.3027,0,-117.88	0/1:102:27,75:27:964:75:2675:-210.29,0,-56.3718	0/0:79:79,0:79:2814:0:0:0,-23.7814,-253.499	0/0:95:94,1:94:3343:1:26:0,-25.998,-298.489
chr07	8006455	.	A	G	33103.4	PASS	AB=0.484556;ABP=11.3941;AC=54;AF=0.287234;AN=188;AO=1991;CIGAR=1X;DP=7027;DPB=7027;DPRA=1.29194;EPP=4214.23;EPPR=10651.6;GTI=0;LEN=1;MEANALT=1.01639;MQM=59.996;MQMR=60;NS=94;NUMALT=1;ODDS=2.37878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70995;QR=180278;RO=5035;RPL=13;RPP=4214.23;RPPR=10651.6;RPR=1978;RUN=1;SAF=1991;SAP=4326.41;SAR=0;SRF=5035;SRP=10936.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:11,13:11:388:13:464:-34.8728,0,-28.0326	0/1:118:73,45:73:2616:45:1620:-110.568,0,-200.166	0/1:67:46,21:46:1656:21:756:-48.1982,0,-129.159	0/1:139:73,66:73:2612:66:2360:-170.816,0,-193.485	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:119:119,0:119:4264:0:0:0,-35.8226,-383.938	0/1:152:74,78:74:2652:78:2786:-205.223,0,-193.17	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/1:128:62,65:62:2203:65:2309:-169.607,0,-160.072	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:82:36,46:36:1292:46:1648:-123.924,0,-91.8993	0/1:67:34,33:34:1215:33:1170:-85.4369,0,-89.4867	0/1:68:39,29:39:1388:29:1040:-73.4443,0,-104.749	0/1:51:23,28:23:819:28:989:-73.9695,0,-58.679	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:38:24,14:24:860:14:485:-32.5378,0,-66.2827	0/1:96:45,51:45:1616:51:1828:-135.902,0,-116.831	0/0:109:107,2:107:3832:2:72:0,-25.9755,-338.24	0/1:39:15,24:15:540:24:830:-63.2731,0,-37.1964	0/0:103:101,2:101:3628:2:72:0,-24.1694,-319.887	0/1:122:76,46:76:2724:46:1652:-112.243,0,-208.677	0/1:26:17,9:17:608:9:324:-21.6791,0,-47.2252	0/1:254:120,134:120:4297:134:4779:-353.806,0,-310.443	0/0:150:150,0:150:5372:0:0:0,-45.1545,-483.612	0/0:37:36,1:36:1292:1:36:0,-7.53983,-112.985	0/1:124:62,62:62:2220:62:2220:-162.737,0,-162.737	0/0:81:76,5:76:2705:5:176:0,-8.19841,-227.508	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:167:94,73:94:3380:73:2605:-184.426,0,-254.142	0/1:94:34,60:34:1216:60:2135:-164.119,0,-81.4497	0/1:73:31,42:31:1116:42:1504:-113.679,0,-78.7765	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:67:31,36:31:1112:36:1280:-95.3342,0,-80.2223	0/1:22:15,7:15:532:7:240:-15.3106,0,-41.5904	0/1:82:36,46:36:1292:46:1652:-124.284,0,-91.8993	0/1:100:51,49:51:1824:49:1756:-128.221,0,-134.338	0/1:63:23,40:23:828:40:1424:-109.493,0,-55.8792	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:120:116,4:116:4148:4:144:0,-22.81,-360.19	0/1:95:51,44:51:1828:44:1576:-113.534,0,-136.203	0/0:98:98,0:98:3485:0:0:0,-29.5009,-313.861	0/1:148:93,55:93:3324:55:1980:-133.922,0,-254.826	0/1:93:35,58:35:1240:58:2060:-157.676,0,-83.9087	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:69:38,31:38:1368:31:1099:-78.4484,0,-102.65	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:73:47,26:47:1684:26:936:-62.5843,0,-129.872	0/1:23:19,4:19:684:4:144:-6.38993,0,-54.9666	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:99:98,1:98:3516:1:36:0,-26.2037,-313.051	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.671	0/0:136:133,3:133:4764:3:108:0,-30.8649,-418.842	0/1:38:19,19:19:680:19:672:-49.3677,0,-50.09	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:133:85,48:85:3056:48:1685:-111.896,0,-235.231	0/1:79:23,56:23:824:56:1992:-155.773,0,-50.7019	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:89:46,43:46:1652:43:1540:-112.101,0,-122.177	0/1:34:24,10:24:856:10:360:-22.5093,0,-67.1261	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/1:110:57,53:57:2052:53:1908:-138.884,0,-151.838	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:43:13,30:13:464:30:1076:-84.2086,0,-29.1532	0/0:94:91,3:91:3264:3:108:0,-18.2216,-283.905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.78	0/1:64:27,37:27:957:37:1301:-98.1233,0,-67.1779	0/1:157:101,56:101:3613:56:1992:-132.293,0,-278.112	0/1:89:45,44:45:1620:44:1563:-114.169,0,-119.298	0/1:49:29,20:29:1036:20:712:-49.6562,0,-78.8034	0/0:117:117,0:117:4208:0:0:0,-35.2205,-378.899	0/1:152:73,79:73:2616:79:2807:-207.114,0,-189.931	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.639	0/1:63:31,32:31:1084:32:1133:-83.3118,0,-78.9012	0/1:74:36,38:36:1288:38:1352:-99.7041,0,-93.9474	0/1:69:27,42:27:964:42:1499:-114.433,0,-66.3058	0/0:120:118,2:118:4211:2:72:0,-29.2869,-372.335	0/0:105:105,0:105:3743:0:0:0,-31.6081,-337.071
chr07	8009530	.	A	G	90237.5	PASS	AB=0.477219;ABP=20.1264;AC=133;AF=0.707447;AN=188;AO=4438;CIGAR=1X;DP=6447;DPB=6447;DPRA=23.0968;EPP=9613.96;EPPR=4341.63;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.9651;MQMR=59.9741;NS=94;NUMALT=1;ODDS=0.517822;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158381;QR=71206;RO=2006;RPL=4435;RPP=9613.96;RPPR=4341.63;RPR=3;RUN=1;SAF=4438;SAP=9640;SAR=0;SRF=2006;SRP=4358.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:18,14:18:640:14:500:-35.7032,0,-48.2964	0/1:33:10,23:10:352:23:828:-64.9101,0,-22.0842	0/1:74:31,43:31:1112:43:1525:-115.265,0,-78.1151	0/1:210:111,99:111:3923:99:3536:-255.233,0,-290.046	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:74:0,74:0:0:74:2640:-237.847,-22.2762,0	0/1:47:28,19:28:992:19:684:-47.7419,0,-75.446	1/1:113:2,111:2:72:111:3957:-349.484,-27.1797,0	0/1:23:5,18:5:180:18:644:-51.3669,0,-9.62837	1/1:133:0,133:0:0:133:4758:-428.377,-40.037,0	1/1:121:0,121:0:0:121:4298:-386.988,-36.4246,0	0/1:74:29,45:29:1021:45:1587:-120.841,0,-69.9238	0/1:96:57,39:57:2044:39:1392:-96.6801,0,-155.333	0/1:104:50,54:50:1784:54:1926:-142.308,0,-129.536	0/1:64:30,34:30:1064:34:1219:-89.8311,0,-76.8057	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:39:18,21:18:640:21:747:-55.8141,0,-46.1891	0/1:123:67,56:67:2365:56:1999:-143.153,0,-176.081	1/1:79:0,79:0:0:79:2837:-255.568,-23.7814,0	0/1:82:55,27:55:1952:27:968:-62.7529,0,-151.271	1/1:75:2,73:2:72:73:2597:-227.14,-15.7405,0	0/1:20:9,11:9:324:11:388:-29.2362,0,-23.4853	0/1:52:32,20:32:1144:20:716:-49.1142,0,-87.616	0/1:96:48,48:48:1720:48:1708:-125.107,0,-126.187	1/1:163:0,163:0:0:163:5827:-524.542,-49.0679,0	1/1:36:0,36:0:0:36:1283:-115.773,-10.8371,0	0/1:156:85,71:85:3018:71:2548:-182.61,0,-224.888	1/1:71:0,71:0:0:71:2539:-228.76,-21.3731,0	1/1:73:0,71:0:0:71:2535:-228.041,-21.3731,0	0/0:9:8,1:8:288:1:27:0,-0.00948704,-23.5676	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	0/1:14:11,3:11:392:3:108:-5.86075,0,-31.4056	0/1:27:15,12:15:528:12:432:-31.0934,0,-39.7236	0/1:233:106,127:106:3754:127:4556:-340.065,0,-267.92	0/1:29:17,12:17:608:12:418:-29.2212,0,-46.3222	0/1:89:44,45:44:1576:45:1595:-117.048,0,-115.34	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:62:35,27:35:1245:27:953:-67.4195,0,-93.6889	0/1:57:25,32:25:892:32:1148:-86.4711,0,-63.441	0/1:85:40,45:40:1424:45:1605:-119.139,0,-102.847	0/1:72:42,30:42:1500:30:1068:-74.7579,0,-113.62	0/1:64:31,33:31:1092:33:1172:-86.5216,0,-78.9527	1/1:81:0,81:0:0:81:2882:-259.616,-24.3834,0	1/1:61:0,61:0:0:61:2181:-196.555,-18.3628,0	0/1:96:52,44:52:1852:44:1567:-112.422,0,-138.061	1/1:73:1,72:1:36:72:2569:-227.86,-18.3769,0	0/1:24:18,6:18:636:6:216:-12.5658,0,-50.3433	0/1:78:46,32:46:1636:32:1148:-80.1495,0,-124.048	1/1:14:1,13:1:36:13:460:-38.1371,-0.616145,0	0/1:132:80,52:80:2788:52:1851:-127.133,0,-211.422	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:80:43,37:43:1532:37:1328:-95.7398,0,-114.091	0/1:29:13,16:13:464:16:576:-43.4451,0,-33.3676	0/1:8:4,4:4:136:4:144:-10.9054,0,-10.1673	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:137:0,137:0:0:137:4887:-439.982,-41.2411,0	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	1/1:78:0,78:0:0:78:2768:-249.36,-23.4803,0	1/1:60:0,60:0:0:60:2123:-191.336,-18.0618,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:41:0,41:0:0:41:1453:-131.063,-12.3422,0	0/1:112:59,53:59:2100:53:1827:-130.988,0,-155.554	0/1:65:50,15:50:1784:15:516:-27.1965,0,-141.276	1/1:99:1,98:1:36:98:3512:-312.691,-26.2037,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:54:32,22:32:1144:22:788:-54.9892,0,-87.0137	0/1:18:6,12:6:208:12:432:-33.8027,0,-13.6405	1/1:119:2,117:2:72:117:4166:-368.016,-28.9858,0	0/1:60:30,30:30:1076:30:1080:-79.4515,0,-79.0911	1/1:149:1,148:1:36:148:5298:-473.304,-41.2552,0	1/1:50:1,49:1:36:49:1745:-153.735,-11.4532,0	0/1:96:50,46:50:1742:46:1643:-119.259,0,-128.161	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:69:38,31:38:1352:31:1116:-79.9806,0,-101.209	0/1:132:70,62:70:2466:62:2217:-160.058,0,-182.456	0/1:63:27,36:27:972:36:1274:-95.9966,0,-68.833	0/1:89:40,49:40:1436:49:1760:-131.892,0,-102.746	1/1:48:0,48:0:0:48:1720:-155.085,-14.4494,0	0/1:137:72,64:72:2580:64:2291:-165.151,0,-191.149	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:65:0,65:0:0:65:2308:-207.979,-19.567,0	1/1:107:0,107:0:0:107:3836:-345.436,-32.2102,0	0/1:89:45,44:45:1597:44:1584:-116.06,0,-117.227	0/1:200:91,109:91:3210:109:3872:-288.467,0,-228.917	0/1:82:59,23:59:2061:23:813:-48.8046,0,-161.076	1/1:28:0,28:0:0:28:1002:-90.4957,-8.42884,0	1/1:94:0,94:0:0:94:3340:-300.817,-28.2968,0
chr07	8011087	.	G	A	82567.2	PASS	AB=0.492621;ABP=6.31122;AC=54;AF=0.290323;AN=186;AO=3464;CIGAR=1X;DP=11691;DPB=11691;DPRA=1.61062;EPP=5109.05;EPPR=14402.9;GTI=0;LEN=1;MEANALT=1.04545;MQM=59.9948;MQMR=59.9904;NS=93;NUMALT=1;ODDS=4.6736;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123579;QR=291540;RO=8222;RPL=1368;RPP=335.241;RPPR=411.723;RPR=2096;RUN=1;SAF=1673;SAP=11.7388;SAR=1791;SRF=3906;SRP=47.4064;SRR=4316;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:12,19:12:424:19:684:-52.5584,0,-29.1645	0/1:171:101,70:101:3616:70:2494:-173.236,0,-274.17	0/1:170:84,86:84:2995:86:3071:-225.435,0,-217.67	0/1:266:131,135:131:4621:135:4804:-352.443,0,-335.982	0/0:36:35,1:35:1232:1:36:0,-7.2388,-107.583	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/0:53:53,0:53:1868:0:0:0,-15.9546,-168.397	0/1:117:66,51:66:2372:51:1810:-127.96,0,-178.517	0/0:91:91,0:91:3204:0:0:0,-27.3937,-288.582	0/1:176:97,79:97:3443:79:2801:-199.348,0,-257.101	0/0:103:103,0:103:3655:0:0:0,-31.0061,-329.156	0/0:160:159,1:159:5643:1:36:0,-44.5665,-504.392	0/1:143:84,59:84:2984:59:2107:-146.851,0,-225.747	0/1:121:60,61:60:2139:61:2171:-159.231,0,-156.353	0/1:205:82,123:82:2895:123:4412:-335.54,0,-199.074	0/1:135:71,63:71:2511:63:2264:-163.324,0,-185.543	0/0:113:113,0:113:3994:0:0:0,-34.0164,-359.651	0/0:120:119,0:119:4234:0:0:0,-35.8226,-380.881	0/1:69:40,29:40:1410:29:1044:-73.5037,0,-106.425	0/1:186:97,89:97:3394:89:3134:-226.294,0,-249.681	0/0:179:178,1:178:6292:1:36:0,-50.2861,-562.78	0/1:31:10,20:10:360:20:720:-55.8904,0,-23.499	0/0:93:90,3:90:3198:3:108:0,-17.9206,-277.969	0/1:85:48,37:48:1691:37:1319:-93.4236,0,-126.888	0/1:41:24,17:24:851:17:608:-42.7098,0,-64.5672	0/1:324:152,172:152:5430:172:6125:-453.816,0,-391.296	0/0:267:266,1:266:9404:1:36:0,-76.7767,-842.731	0/0:115:115,0:115:4107:0:0:0,-34.6184,-369.815	0/1:287:128,159:128:4564:159:5699:-426.631,0,-324.53	0/0:87:86,1:86:3051:1:36:0,-22.5913,-271.22	0/0:93:92,1:92:3276:1:36:0,-24.3975,-291.46	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:5:3,2:3:99:2:72:-5.33157,0,-7.73143	0/1:441:230,211:230:8081:211:7562:-547.863,0,-594.507	0/1:69:47,22:47:1680:22:783:-50.0219,0,-130.716	0/1:107:64,43:64:2266:43:1544:-107.043,0,-171.992	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:146:81,65:81:2872:65:2294:-162.769,0,-214.766	0/1:65:37,28:37:1307:28:1004:-71.1089,0,-98.3638	0/1:116:60,56:60:2156:56:1989:-144.363,0,-159.387	0/1:174:85,89:85:3009:89:3154:-231.707,0,-218.663	0/1:151:84,67:84:2995:67:2365:-167.651,0,-224.326	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:67:65,1:65:2286:1:36:0,-16.6295,-202.401	0/1:103:61,42:61:2134:42:1504:-104.648,0,-161.317	0/0:126:126,0:126:4427:0:0:0,-37.9298,-398.605	0/1:186:97,89:97:3463:89:3179:-230.342,0,-255.891	0/1:100:45,55:45:1565:55:1957:-146.301,0,-111.035	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/1:477:249,228:249:8898:228:8196:-594.057,0,-657.213	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:211:115,96:115:4066:96:3428:-245.217,0,-302.611	0/1:29:21,8:21:727:8:276:-16.444,0,-57.0196	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.229	0/0:195:195,0:195:6886:0:0:0,-58.7008,-619.812	.:.:.:.:.:.:.:.	0/0:245:245,0:245:8672:0:0:0,-73.7523,-780.477	0/0:192:190,2:190:6755:2:72:0,-50.961,-601.19	0/1:85:52,33:52:1859:33:1175:-80.4694,0,-142.001	0/0:76:76,0:76:2678:0:0:0,-22.8783,-241.264	0/1:168:83,85:83:2959:85:3031:-222.447,0,-215.97	0/1:138:46,92:46:1635:92:3300:-255.676,0,-105.896	0/0:70:69,1:69:2443:1:27:0,-18.3723,-217.426	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.443	0/1:124:56,68:56:1977:68:2414:-180.188,0,-140.875	0/1:28:13,15:13:464:15:540:-40.5077,0,-33.6687	0/0:48:48,0:48:1684:0:0:0,-14.4494,-151.844	0/1:116:62,54:62:2185:54:1919:-138.067,0,-161.995	0/0:106:106,0:106:3771:0:0:0,-31.9092,-339.591	0/0:324:324,0:324:11536:0:0:0,-97.5337,-1038.11	0/1:53:27,26:27:942:26:927:-67.7928,0,-69.1377	0/0:217:216,1:216:7677:1:36:0,-61.7252,-687.37	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:237:235,2:235:8334:2:72:0,-64.5074,-743.235	0/1:134:75,59:75:2659:59:2116:-150.371,0,-199.112	0/1:245:105,140:105:3732:140:4975:-374.147,0,-262.328	0/1:166:80,86:80:2812:86:3079:-227.367,0,-203.347	0/1:130:65,65:65:2295:65:2312:-169.205,0,-167.675	0/0:198:197,1:197:6939:1:36:0,-56.0057,-620.987	0/1:267:129,138:129:4558:138:4890:-359.879,0,-330.014	0/0:92:92,0:92:3269:0:0:0,-27.6948,-294.43	0/0:131:131,0:131:4632:0:0:0,-39.4349,-417.044	0/0:149:148,0:148:5270:0:0:0,-44.5524,-474.078	0/1:68:40,28:40:1420:28:1008:-70.5663,0,-107.627	0/1:157:82,75:82:2906:75:2672:-193.463,0,-214.514	0/1:157:55,102:55:1964:102:3648:-281.261,0,-129.774	0/0:183:182,1:182:6498:1:36:0,-51.4902,-581.302	0/0:258:257,1:257:9138:1:36:0,-74.0675,-818.798
chr07	8062482	.	C	T	18309.3	PASS	AB=0.508609;ABP=4.39362;AC=51;AF=0.271277;AN=188;AO=1098;CIGAR=1X;DP=3651;DPB=3651;DPRA=1.36225;EPP=2387.29;EPPR=5540.26;GTI=2;LEN=1;MEANALT=1.01852;MQM=59.9763;MQMR=59.9875;NS=94;NUMALT=1;ODDS=0.374885;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39319;QR=91078;RO=2550;RPL=1098;RPP=2387.29;RPPR=5540.26;RPR=0;RUN=1;SAF=0;SAP=2387.29;SAR=1098;SRF=0;SRP=5540.26;SRR=2550;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/1:22:13,9:13:453:9:320:-22.5197,0,-34.477	0/1:41:23,18:23:798:18:648:-46.3097,0,-59.7919	0/1:29:14,15:14:500:15:532:-39.4832,0,-36.6063	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:43:18,25:18:640:25:900:-68.3767,0,-44.985	0/0:80:79,1:79:2829:1:36:0,-20.4841,-251.249	0/1:24:15,9:15:536:9:320:-21.9176,0,-41.3501	0/0:52:52,0:52:1840:0:0:0,-15.6536,-165.878	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:74:40,34:40:1436:34:1224:-88.1908,0,-107.261	0/1:88:42,46:42:1500:46:1632:-120.668,0,-108.804	0/1:50:30,20:30:1076:20:714:-49.5354,0,-82.1014	0/0:56:56,0:56:2001:0:0:0,-16.8577,-180.362	0/0:45:44,1:44:1576:1:36:0,-9.94807,-138.533	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:42:23,19:23:820:19:680:-48.8859,0,-61.4793	0/1:45:27,18:27:957:18:633:-43.7487,0,-72.8975	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:28:16,12:16:564:12:428:-30.43,0,-42.6615	0/1:75:46,29:46:1648:29:1040:-71.3371,0,-126.031	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:38:22,16:22:792:16:572:-40.3743,0,-60.1665	0/1:41:37,4:37:1328:4:144:-0.966668,0,-107.48	0/0:48:46,1:46:1625:1:36:0,-10.91,-142.939	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:98:53,45:53:1896:45:1616:-116.229,0,-141.417	0/1:17:13,4:13:468:4:140:-7.82707,0,-37.3421	0/1:49:21,28:21:752:28:1008:-76.2859,0,-53.2558	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:43:16,27:16:572:27:968:-74.4931,0,-38.8691	0/1:36:18,18:18:639:18:648:-47.8148,0,-47.0012	0/1:49:22,27:22:792:27:964:-72.3264,0,-56.6646	0/1:77:30,47:30:1068:47:1680:-128.308,0,-73.2528	0/1:48:21,27:21:756:27:972:-73.3485,0,-53.9096	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:48:22,26:22:788:26:936:-70.11,0,-56.7954	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:31:14,17:14:504:17:608:-45.7201,0,-36.3662	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2163	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:34:18,16:18:648:16:576:-41.94,0,-48.4169	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:19:18,0:18:629:0:0:0,-5.41854,-56.5745	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:9:6,3:6:212:3:104:-6.99354,0,-16.7155	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:88:35,53:35:1260:53:1887:-143.616,0,-87.2148	0/1:20:4,16:4:144:16:572:-45.7928,0,-7.29302	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:28:13,15:13:464:15:540:-40.5077,0,-33.6687	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:33:18,15:18:625:15:540:-39.0025,0,-46.6385	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:34:9,25:9:320:25:896:-70.7253,0,-18.9073	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:42:41,1:41:1467:1:36:0,-9.04498,-128.727	0/1:47:16,31:16:553:31:1101:-85.25,0,-35.9456	0/1:102:54,48:54:1906:48:1716:-124.021,0,-141.109	0/1:37:17,20:17:603:20:720:-53.9907,0,-43.4614	0/1:62:29,33:29:1040:33:1180:-87.8442,0,-75.2505	0/0:41:40,0:40:1436:0:0:0,-12.0412,-129.178	0/1:92:43,49:43:1544:49:1764:-131.349,0,-111.558	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:69:40,29:40:1436:29:1040:-73.1433,0,-108.767	0/1:104:54,50:54:1927:50:1796:-130.615,0,-142.399	0/1:94:30,64:30:1072:64:2292:-178.245,0,-68.4956	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:92:92,0:92:3281:0:0:0,-27.6948,-295.509
chr07	8096306	.	G	C	129418	PASS	AB=0.404074;ABP=548.339;AC=132;AF=0.702128;AN=188;AO=6593;CIGAR=1X;DP=10703;DPB=10703;DPRA=39.1722;EPP=14319.5;EPPR=8916.9;GTI=8;LEN=1;MEANALT=1.05495;MQM=59.7455;MQMR=59.9647;NS=94;NUMALT=1;ODDS=1.51896;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235009;QR=146631;RO=4105;RPL=0;RPP=14319.5;RPPR=8916.9;RPR=6593;RUN=1;SAF=6593;SAP=14319.5;SAR=0;SRF=4105;SRP=8916.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:37,20:37:1324:20:693:-45.5283,0,-102.303	0/1:175:104,71:104:3701:71:2511:-173.553,0,-280.612	0/1:154:88,66:88:3160:66:2352:-165.574,0,-238.266	0/1:275:149,125:149:5317:125:4472:-318.91,0,-395.971	1/1:81:0,81:0:0:81:2876:-259.069,-24.3834,0	1/1:96:0,96:0:0:96:3432:-309.087,-28.8989,0	1/1:112:2,110:2:72:110:3923:-346.426,-26.8786,0	0/1:225:138,87:138:4895:87:3093:-210.786,0,-372.914	1/1:72:1,71:1:36:71:2540:-225.236,-18.0759,0	0/1:116:59,57:59:2116:57:2017:-146.859,0,-155.789	1/1:65:1,64:1:36:64:2288:-202.582,-15.9687,0	1/1:79:0,79:0:0:79:2823:-254.295,-23.7814,0	0/1:108:59,49:59:2116:49:1747:-125.002,0,-158.04	0/1:87:51,36:51:1836:36:1260:-87.5078,0,-139.331	0/1:70:35,35:35:1260:35:1256:-92.2732,0,-92.6334	1/1:51:1,50:1:36:50:1796:-158.254,-11.7543,0	1/1:77:0,77:0:0:77:2735:-246.365,-23.1793,0	1/1:71:3,68:3:108:68:2419:-207.899,-11.3211,0	0/1:45:21,24:21:752:24:843:-62.637,0,-54.4599	0/1:296:160,136:160:5706:136:4853:-347.757,0,-424.549	1/1:114:1,113:1:36:113:3998:-356.384,-30.7191,0	0/1:202:156,46:156:5596:46:1644:-87.4406,0,-442.952	1/1:66:1,65:1:36:65:2280:-201.862,-16.2697,0	0/1:103:80,23:80:2868:23:828:-43.838,0,-227.343	0/1:87:62,25:62:2213:25:900:-55.1299,0,-173.243	0/1:468:299,169:299:10649:169:5981:-397.514,0,-817.437	1/1:194:0,194:0:0:194:6956:-625.852,-58.3998,0	1/1:31:1,30:1:36:30:1076:-93.5546,-5.73366,0	0/1:436:251,185:251:8948:185:6604:-463.168,0,-673.68	1/1:155:4,151:4:144:151:5354:-468.593,-33.346,0	1/1:157:1,156:1:36:156:5567:-497.519,-43.6634,0	0/1:7:3,4:3:108:4:140:-10.8358,0,-7.96796	1/1:10:0,10:0:0:10:360:-32.7427,-3.0103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/1:276:152,124:152:5444:124:4456:-318.091,0,-407.004	0/1:277:167,110:167:5928:110:3901:-267.861,0,-450.242	0/1:80:49,31:49:1747:31:1108:-75.9419,0,-133.431	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:170:84,86:84:3016:86:3059:-224.36,0,-220.495	0/1:54:31,23:31:1112:23:820:-57.8669,0,-84.1357	0/1:118:77,41:77:2730:41:1456:-95.8016,0,-210.419	0/1:102:58,44:58:2075:44:1567:-110.615,0,-156.315	0/1:84:45,39:45:1616:39:1387:-99.728,0,-120.443	1/1:134:0,134:0:0:134:4754:-427.998,-40.338,0	1/1:160:0,160:0:0:160:5703:-513.342,-48.1648,0	0/1:228:136,92:136:4850:92:3277:-226.503,0,-368.017	1/1:90:0,90:0:0:90:3192:-287.494,-27.0927,0	0/1:156:98,58:98:3493:58:2049:-137.718,0,-267.619	0/1:102:51,51:51:1801:51:1824:-133.736,0,-131.665	1/1:7:0,7:0:0:7:237:-21.6587,-2.10721,0	0/1:177:92,85:92:3300:85:3040:-220.052,0,-243.936	1/1:59:0,59:0:0:59:2106:-189.807,-17.7608,0	0/1:17:13,4:13:468:4:144:-8.19268,0,-37.3421	0/1:152:94,58:94:3334:58:2053:-139.282,0,-254.52	0/1:76:43,33:43:1532:33:1176:-83.2467,0,-115.295	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0812	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:61:0,61:0:0:61:2180:-196.075,-18.3628,0	1/1:128:2,126:2:72:126:4504:-398.712,-31.7187,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:251:0,251:0:0:251:8945:-803.891,-75.5585,0	1/1:107:3,104:3:108:104:3691:-322.311,-22.135,0	0/1:74:38,36:38:1360:36:1284:-93.5516,0,-100.424	1/1:90:0,90:0:0:90:3197:-287.951,-27.0927,0	0/1:231:161,70:161:5772:70:2504:-156.044,0,-450.056	0/1:136:104,32:104:3744:32:1148:-62.0612,0,-296.218	1/1:20:1,19:1:36:19:684:-58.3073,-2.43755,0	1/1:53:0,53:0:0:53:1877:-169.204,-15.9546,0	0/1:104:45,59:45:1612:59:2095:-157.483,0,-114.063	0/1:29:17,12:17:612:12:428:-30.1289,0,-46.6836	1/1:111:1,108:1:36:108:3857:-343.746,-29.5488,0	0/1:70:47,23:47:1688:23:824:-53.3945,0,-131.135	1/1:193:2,190:2:72:190:6794:-604.72,-51.221,0	1/1:193:0,193:0:0:193:6918:-622.547,-58.0988,0	0/1:128:96,32:96:3418:32:1148:-65.0913,0,-269.3	1/1:96:1,95:1:36:95:3375:-300.255,-25.3006,0	1/1:9:0,9:0:0:9:324:-29.392,-2.70927,0	1/1:146:0,145:0:0:145:5165:-464.551,-43.6494,0	0/1:86:60,26:60:2160:26:924:-57.5891,0,-168.778	0/1:325:182,143:182:6529:143:5112:-362.387,0,-489.826	0/1:147:74,73:74:2664:73:2616:-191.366,0,-195.754	0/1:80:44,36:44:1568:36:1277:-91.1492,0,-117.329	1/1:90:0,90:0:0:90:3219:-289.932,-27.0927,0	0/1:202:104,98:104:3691:98:3508:-255.103,0,-271.582	1/1:59:5,54:5:176:54:1940:-158.745,-1.63334,0	1/1:102:0,102:0:0:102:3648:-328.493,-30.7051,0	1/1:79:0,79:0:0:79:2818:-253.847,-23.7814,0	0/1:30:18,12:18:648:12:432:-30.1887,0,-49.621	0/1:95:54,41:54:1917:41:1472:-104.175,0,-144.207	0/1:78:62,16:62:2193:16:576:-28.6938,0,-174.151	1/1:72:0,72:0:0:72:2569:-231.457,-21.6742,0	1/1:119:0,119:0:0:119:4250:-382.479,-35.8226,0
chr07	8097692	.	G	T	33576.7	PASS	AB=0.457016;ABP=79.1738;AC=51;AF=0.271277;AN=188;AO=2183;CIGAR=1X;DP=7994;DPB=7994;DPRA=1.36655;EPP=4743.33;EPPR=12536.7;GTI=3;LEN=1;MEANALT=1.33333;MQM=59.8598;MQMR=50.9099;NS=94;NUMALT=1;ODDS=1.12645;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76008;QR=206941;RO=5772;RPL=2183;RPP=4743.33;RPPR=12536.7;RPR=0;RUN=1;SAF=0;SAP=4743.33;SAR=2183;SRF=0;SRP=12536.7;SRR=5772;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:34,12:34:1220:12:409:-23.2881,0,-94.9934	0/1:91:36,55:36:1284:55:1893:-143.245,0,-86.4562	0/1:86:57,28:57:2028:28:985:-63.0484,0,-151.756	0/1:176:113,62:113:4052:62:2209:-145.887,0,-308.688	0/0:40:40,0:40:1436:0:0:0,-12.0412,-128.38	0/0:22:22,0:22:792:0:0:0,-6.62266,-69.2364	0/0:71:71,0:71:2544:0:0:0,-21.3731,-227.709	0/1:149:97,52:97:3480:52:1833:-120.364,0,-265.078	0/0:103:103,0:103:3692:0:0:0,-31.0061,-324.158	0/1:99:37,62:37:1324:62:2167:-165.49,0,-88.2252	0/0:25:25,0:25:888:0:0:0,-7.52575,-79.9199	0/0:121:121,0:121:4344:0:0:0,-36.4246,-385.578	0/1:89:36,53:36:1296:53:1798:-135.299,0,-87.3214	0/1:35:11,24:11:396:24:864:-67.5465,0,-24.7002	0/1:84:43,41:43:1548:41:1412:-102.081,0,-113.45	0/0:42:42,0:42:1512:0:0:0,-12.6433,-133.585	0/0:31:28,0:28:1008:0:0:0,-8.42884,-90.0129	0/0:46:46,0:46:1656:0:0:0,-13.8474,-146.442	0/1:28:5,23:5:180:23:733:-57.8362,0,-8.05143	0/1:405:130,275:130:4672:275:9440:-727.501,0,-295.478	0/0:145:144,0:144:5156:0:0:0,-43.3483,-456.877	0/1:70:43,27:43:1548:27:953:-65.0112,0,-117.372	0/0:119:119,0:119:4280:0:0:0,-35.8226,-381.293	0/1:83:50,33:50:1788:33:1154:-79.1705,0,-133.858	0/1:63:42,21:42:1504:21:733:-47.3248,0,-113.871	0/1:195:108,85:108:3880:85:2988:-210.653,0,-288.576	0/0:156:156,0:156:5600:0:0:0,-46.9607,-496.834	0/0:31:30,0:30:1080:0:0:0,-9.0309,-95.5318	0/1:180:124,55:124:4444:55:1946:-121.168,0,-343.616	0/0:121:114,6:114:4092:6:216:0,-16.6929,-344.873	0/0:118:118,0:118:4216:0:0:0,-35.5215,-376.569	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6102	0/1:17:15,2:15:540:2:57:-0.2958,0,-43.526	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81819	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.0325	0/1:215:92,122:92:3296:122:4293:-321.608,0,-230.455	0/1:122:66,56:66:2368:56:1989:-142.534,0,-171.774	0/1:49:20,29:20:712:29:987:-74.382,0,-48.8792	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.83639	0/1:308:245,61:245:8788:61:2116:-98.2101,0,-689.845	0/1:37:13,22:13:468:22:769:-58.6336,0,-31.2005	0/1:116:75,41:75:2688:41:1427:-93.8002,0,-204.394	0/1:68:25,42:25:900:42:1474:-112.416,0,-60.4889	0/1:49:21,28:21:756:28:989:-74.5715,0,-53.3347	0/0:102:102,0:102:3641:0:0:0,-30.7051,-324.894	0/0:136:136,0:136:4880:0:0:0,-40.9401,-433.72	0/1:180:116,62:116:4152:62:2160:-140.716,0,-315.734	0/0:151:151,0:151:5396:0:0:0,-45.4555,-481.789	0/1:105:61,43:61:2192:43:1503:-103.89,0,-164.569	0/1:88:50,38:50:1800:38:1360:-96.21,0,-133.706	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2174	0/1:98:63,35:63:2264:35:1180:-76.964,0,-170.977	0/0:47:47,0:47:1680:0:0:0,-14.1484,-149.643	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.50424	0/1:100:41,59:41:1460:59:2014:-151.42,0,-100.6	0/1:44:36,8:36:1273:8:273:-11.6549,0,-100.247	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.2878	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4256	0/0:53:53,0:53:1908:0:0:0,-15.9546,-170.47	0/0:71:70,0:70:2508:0:0:0,-21.0721,-222.733	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59142	0/0:152:149,2:149:5332:2:72:0,-39.0884,-468.058	0/0:167:167,0:167:5992:0:0:0,-50.272,-532.163	0/1:49:22,27:22:784:27:972:-73.0368,0,-55.5394	0/0:73:73,0:73:2612:0:0:0,-21.9752,-233.207	0/1:130:93,37:93:3340:37:1290:-77.263,0,-257.299	0/1:73:35,38:35:1260:38:1341:-99.0129,0,-91.2169	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.265	0/0:51:51,0:51:1832:0:0:0,-15.3525,-162.937	0/1:54:19,30:19:684:30:1049:-79.6166,0,-46.7202	0/1:15:9,6:9:320:6:201:-13.9016,0,-23.3924	0/0:100:100,0:100:3580:0:0:0,-30.103,-319.142	0/1:112:42,70:42:1512:70:2399:-182.44,0,-99.7277	0/0:110:110,0:110:3948:0:0:0,-33.1133,-351.071	0/0:156:156,0:156:5604:0:0:0,-46.9607,-499.907	0/1:56:39,17:39:1400:17:600:-37.4715,0,-104.918	0/0:70:68,2:68:2436:2:72:0,-14.2354,-209.923	0/0:21:21,0:21:748:0:0:0,-6.32163,-65.2836	0/0:92:91,1:91:3264:1:36:0,-24.3486,-288.162	0/1:75:56,19:56:2008:19:639:-35.2439,0,-156.276	0/1:243:151,89:151:5404:89:3056:-202.669,0,-409.735	0/1:87:27,57:27:972:57:2032:-157.517,0,-61.1432	0/1:62:32,29:32:1144:29:1014:-72.8452,0,-84.2028	0/0:51:50,0:50:1780:0:0:0,-15.0515,-158.326	0/1:145:57,88:57:2048:88:3129:-238.187,0,-137.813	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.1326	0/0:82:79,0:79:2827:0:0:0,-23.7814,-251.733	0/0:59:58,0:58:2076:0:0:0,-17.4597,-183.279	0/1:19:6,13:6:216:13:434:-33.6579,0,-13.999	0/1:51:24,27:24:856:27:949:-70.3702,0,-59.7547	0/1:82:22,60:22:788:60:2075:-162.296,0,-46.4331	0/0:137:137,0:137:4908:0:0:0,-41.2411,-437.923	0/0:117:117,0:117:4208:0:0:0,-35.2205,-377.01
chr07	8097697	.	T	G	142825	PASS	AB=0.629392;ABP=1840.56;AC=96;AF=0.510638;AN=188;AO=7960;CIGAR=1X;DP=12643;DPB=12643;DPRA=0;EPP=17287.9;EPPR=10172;GTI=8;LEN=1;MEANALT=1;MQM=53.3876;MQMR=59.3658;NS=94;NUMALT=1;ODDS=0.0669075;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=285388;QR=167371;RO=4683;RPL=7960;RPP=17287.9;RPPR=10172;RPR=0;RUN=1;SAF=0;SAP=17287.9;SAR=7960;SRF=4683;SRP=10172;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:34,46:34:1212:46:1632:-121.842,0,-85.2993	0/1:157:63,94:63:2252:94:3384:-255.106,0,-154.337	0/1:145:58,87:58:2061:87:3116:-230.966,0,-141.493	0/1:223:48,175:48:1720:175:6244:-491.348,0,-86.9822	0/1:54:13,41:13:468:41:1468:-115.018,0,-26.1478	0/1:54:32,22:32:1152:22:780:-51.9256,0,-87.6924	0/1:157:85,72:85:3048:72:2564:-182.222,0,-227.246	0/1:187:39,148:39:1392:148:5320:-419.093,0,-69.1728	0/1:173:72,101:72:2565:101:3604:-264.448,0,-178.995	0/1:158:61,97:61:2184:97:3476:-263.681,0,-148.827	0/1:51:26,25:26:932:25:892:-64.9243,0,-68.8382	0/1:153:35,118:35:1252:118:4240:-330.057,0,-66.8981	0/1:133:43,90:43:1544:90:3236:-248.884,0,-99.1712	0/1:98:62,36:62:2213:36:1288:-85.9814,0,-169.873	0/1:122:38,84:38:1364:84:3020:-234.429,0,-86.3187	0/1:72:30,42:30:1076:42:1508:-111.577,0,-75.4787	0/1:68:40,28:40:1421:28:1004:-69.5677,0,-107.462	0/1:70:25,45:25:900:45:1616:-121.991,0,-59.9425	0/1:52:24,28:24:852:28:1004:-74.9518,0,-61.2852	0/1:477:74,403:74:2637:403:14436:-1152.25,0,-93.8839	0/1:199:55,144:55:1961:144:5176:-399.107,0,-116.858	0/1:97:26,71:26:928:71:2544:-198.847,0,-54.6234	0/1:169:50,119:50:1784:119:4272:-329.707,0,-109.137	0/1:126:44,82:44:1580:82:2948:-225.239,0,-104.534	0/1:92:29,63:29:1044:63:2256:-172.572,0,-66.5629	0/1:396:203,193:203:7249:193:6940:-502.164,0,-532.863	0/1:290:136,154:136:4861:154:5516:-402.25,0,-349.832	0/1:49:19,30:19:680:30:1072:-80.5472,0,-46.7787	0/1:295:116,179:116:4164:179:6436:-488.197,0,-286.054	0/1:195:74,121:74:2644:121:4348:-328.882,0,-178.603	0/1:210:92,118:92:3284:118:4244:-315.85,0,-232.486	0/1:8:4,4:4:144:4:144:-10.8836,0,-10.9054	0/1:22:5,17:5:180:17:612:-48.498,0,-9.9294	1/1:2:0,2:0:0:2:72:-6.81819,-0.60206,0	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	1/1:5:0,5:0:0:5:180:-16.0325,-1.50515,0	0/1:345:133,212:133:4742:212:7612:-578.87,0,-322.955	0/1:263:137,126:137:4912:126:4520:-322.659,0,-362.949	0/1:80:31,49:31:1112:49:1764:-134.187,0,-75.7708	0/1:4:1,3:1:36:3:108:-8.63227,0,-2.39415	0/1:360:56,304:56:2000:304:10900:-864.202,0,-71.8136	0/1:60:26,34:26:936:34:1224:-92.0572,0,-66.4839	0/1:172:56,116:56:2004:116:4156:-319.774,0,-128.843	0/1:98:31,67:31:1112:67:2400:-186.453,0,-70.8798	0/1:95:46,49:46:1641:49:1756:-129.445,0,-119.362	0/1:185:84,101:84:3012:101:3624:-267.451,0,-215.155	0/1:170:34,136:34:1220:136:4884:-383.348,0,-58.8557	0/1:257:82,175:82:2909:175:6260:-481.985,0,-184.579	0/1:232:81,151:81:2904:151:5388:-410.9,0,-191.593	0/1:152:48,104:48:1716:104:3728:-288.656,0,-108.961	0/1:195:106,89:106:3796:89:3192:-226.721,0,-283.078	0/1:15:7,8:7:252:8:288:-21.7019,0,-18.4847	0/1:158:62,96:62:2201:96:3448:-259.602,0,-150.704	0/1:64:16,48:16:576:48:1728:-134.574,0,-32.9091	0/1:9:4,5:4:129:5:176:-13.4109,0,-9.21839	0/1:172:70,102:70:2512:102:3668:-277.517,0,-174.536	0/1:51:6,45:6:208:45:1616:-128.839,0,-3.70563	0/1:10:1,9:1:36:9:324:-26.4638,0,-0.587975	0/1:24:15,9:15:536:9:320:-21.8394,0,-41.3501	0/1:83:30,53:30:1076:53:1892:-144.085,0,-72.1362	0/1:146:78,68:78:2800:68:2444:-173.393,0,-207.913	0/1:2:1,1:1:36:1:36:-2.98936,0,-2.98717	0/1:221:70,151:70:2504:151:5428:-415.56,0,-159.025	0/1:254:84,170:84:2974:170:6088:-464.44,0,-191.421	0/1:101:52,49:52:1860:49:1748:-126.66,0,-137.247	0/1:103:29,74:29:1032:74:2660:-206.67,0,-62.1094	0/1:246:121,125:121:4340:125:4464:-325.764,0,-316.696	0/1:155:79,76:79:2798:76:2732:-198.954,0,-205.382	0/1:23:10,13:10:360:13:468:-35.3413,0,-25.8206	0/1:95:44,51:44:1584:51:1836:-134.688,0,-114.253	0/1:139:89,50:89:3188:50:1788:-119.295,0,-245.154	0/1:30:15,15:15:540:15:532:-37.9575,0,-39.9056	0/1:161:60,101:60:2148:101:3624:-274.303,0,-145.06	0/1:139:27,112:27:972:112:4012:-316.832,0,-45.9547	0/1:241:131,110:131:4662:110:3944:-278.357,0,-347.014	0/1:214:60,154:60:2152:154:5512:-427.674,0,-129.312	0/1:101:44,57:44:1584:57:2044:-149.58,0,-112.362	0/1:114:44,70:44:1572:70:2516:-189.618,0,-107.426	0/1:30:8,22:8:288:22:792:-60.1641,0,-17.2365	0/1:139:46,93:46:1656:93:3348:-256.705,0,-107.426	0/1:99:21,78:21:737:78:2796:-219.95,0,-36.8202	0/1:365:119,246:119:4215:246:8800:-677.333,0,-269.359	0/1:168:80,88:80:2826:88:3168:-233.427,0,-203.706	0/1:91:31,60:31:1108:60:2152:-166.214,0,-72.6258	0/1:101:50,51:50:1766:51:1832:-132.642,0,-128.783	0/1:209:65,144:65:2336:144:5152:-397.793,0,-147.348	0/1:50:36,14:36:1283:14:504:-29.9123,0,-100.646	0/1:120:41,79:41:1468:79:2836:-216.564,0,-96.2641	0/1:99:41,58:41:1468:58:2080:-153.285,0,-102.586	0/1:37:17,20:17:612:20:720:-53.9197,0,-44.2615	0/1:100:48,52:48:1724:52:1860:-135.557,0,-125.329	0/1:110:29,81:29:1044:81:2900:-227.971,0,-61.1524	0/1:177:44,133:44:1580:133:4736:-369.166,0,-89.1929	0/1:165:49,116: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chr07	8308205	.	C	T	59839.1	PASS	AB=0.419128;ABP=164.573;AC=133;AF=0.707447;AN=188;AO=3002;CIGAR=1X;DP=4679;DPB=4679;DPRA=9.60783;EPP=6521.77;EPPR=3644.57;GTI=4;LEN=1;MEANALT=1;MQM=59.5949;MQMR=60;NS=94;NUMALT=1;ODDS=0.0113127;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107173;QR=59656;RO=1677;RPL=3002;RPP=6521.77;RPPR=3644.57;RPR=0;RUN=1;SAF=0;SAP=6521.77;SAR=3002;SRF=0;SRP=3644.57;SRR=1677;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:18,19:18:644:19:684:-50.7346,0,-47.1525	0/1:70:30,40:30:1080:40:1425:-107.426,0,-76.4412	0/1:85:51,34:51:1832:34:1167:-79.7106,0,-139.573	0/1:88:40,48:40:1417:48:1724:-128.941,0,-101.335	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	1/1:40:0,40:0:0:40:1406:-126.832,-12.0412,0	1/1:77:0,77:0:0:77:2756:-248.206,-23.1793,0	0/1:114:76,38:76:2713:38:1358:-88.1831,0,-210.095	1/1:45:0,45:0:0:45:1611:-145.279,-13.5464,0	0/1:74:35,39:35:1226:39:1396:-103.66,0,-88.3635	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:25:0,25:0:0:25:900:-81.2926,-7.52575,0	0/1:18:6,12:6:216:12:432:-33.7993,0,-14.372	0/1:20:12,8:12:432:8:288:-20.2459,0,-33.2006	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:132:85,47:85:3052:47:1692:-112.831,0,-235.173	1/1:63:0,63:0:0:63:2264:-203.968,-18.9649,0	0/1:115:78,37:78:2781:37:1298:-82.4987,0,-215.911	1/1:41:1,40:1:36:40:1440:-126.295,-8.74396,0	0/1:61:33,28:33:1188:28:989:-70.8875,0,-88.8658	0/1:34:22,12:22:792:12:432:-28.9862,0,-61.3707	0/1:236:134,102:134:4737:102:3638:-256.033,0,-355.443	1/1:126:0,126:0:0:126:4468:-402.186,-37.9298,0	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	0/1:179:95,84:95:3401:84:2994:-215.787,0,-252.418	1/1:119:5,114:5:165:114:4047:-349.184,-20.649,0	1/1:83:1,82:1:36:82:2952:-262.267,-21.3872,0	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-9.98707,-0.90309,0	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/1:6:2,4:2:68:4:140:-11.135,0,-4.65153	0/1:45:30,15:30:1080:15:540:-35.3902,0,-83.9669	0/1:148:93,55:93:3299:55:1952:-131.293,0,-252.573	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:111:56,55:56:1978:55:1980:-145.034,0,-144.877	0/1:10:3,7:3:108:7:252:-20.0177,0,-7.06487	0/1:98:73,25:73:2592:25:885:-50.4656,0,-204.026	0/1:26:10,16:10:360:16:572:-43.9866,0,-24.9175	0/1:16:10,6:10:326:6:212:-14.6083,0,-24.8378	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:53:0,53:0:0:53:1904:-171.596,-15.9546,0	0/1:75:43,32:43:1529:32:1118:-78.31,0,-115.324	1/1:67:0,67:0:0:67:2397:-215.949,-20.169,0	0/1:66:34,32:34:1194:32:1148:-83.7554,0,-87.8933	0/1:90:54,36:54:1910:36:1287:-88.9893,0,-145.081	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:78:42,36:42:1504:36:1292:-93.1034,0,-112.174	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:55:32,23:32:1144:23:824:-57.9267,0,-86.7129	0/1:41:33,8:33:1188:8:288:-13.9252,0,-94.8864	0/1:5:3,2:3:108:2:53:-3.52887,0,-8.57002	1/1:9:0,9:0:0:9:309:-28.1403,-2.70927,0	1/1:45:0,45:0:0:45:1601:-144.215,-13.5464,0	1/1:51:0,51:0:0:51:1821:-164.137,-15.3525,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:137:0,137:0:0:137:4909:-441.94,-41.2411,0	1/1:101:0,101:0:0:101:3624:-325.862,-30.404,0	0/1:35:23,12:23:828:12:432:-28.6851,0,-64.3081	1/1:43:0,43:0:0:43:1533:-138.22,-12.9443,0	0/1:101:65,36:65:2317:36:1281:-85.1841,0,-178.385	0/1:69:46,23:46:1652:23:813:-52.718,0,-128.197	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:55:0,55:0:0:55:1961:-176.728,-16.5567,0	0/1:45:19,26:19:680:26:936:-71.0131,0,-47.9828	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:86:0,86:0:0:86:3065:-275.888,-25.8886,0	0/1:37:17,20:17:578:20:720:-53.9907,0,-41.1993	1/1:62:0,62:0:0:62:2232:-201.043,-18.6639,0	1/1:84:1,83:1:36:83:2984:-265.029,-21.6882,0	0/1:77:56,21:56:1956:21:741:-43.8256,0,-153.129	1/1:26:0,26:0:0:26:921:-83.2052,-7.82678,0	1/1:2:0,2:0:0:2:72:-6.81819,-0.60206,0	1/1:35:0,35:0:0:35:1245:-112.28,-10.5361,0	0/1:60:31,29:31:1101:29:1044:-76.1816,0,-81.3366	0/1:104:59,45:59:2094:45:1614:-113.892,0,-157.419	0/1:62:31,31:31:1097:31:1086:-79.3541,0,-80.3742	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	0/1:30:22,8:22:788:8:280:-16.5084,0,-62.2139	1/1:19:0,19:0:0:19:684:-61.8618,-5.71957,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:11:1,10:1:36:10:356:-29.0696,0,-0.286945	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:90:1,89:1:36:89:3204:-284.952,-23.4944,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0
chr07	8360395	.	C	T	75129	PASS	AB=0.471326;ABP=25.7995;AC=132;AF=0.717391;AN=184;AO=3705;CIGAR=1X;DP=5411;DPB=5411;DPRA=11.8813;EPP=8048.32;EPPR=3705.37;GTI=1;LEN=1;MEANALT=1.01099;MQM=59.8475;MQMR=59.9883;NS=92;NUMALT=1;ODDS=1.20353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132355;QR=60565;RO=1705;RPL=0;RPP=8048.32;RPPR=3705.37;RPR=3705;RUN=1;SAF=0;SAP=8048.32;SAR=3705;SRF=0;SRP=3705.37;SRR=1705;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:9,11:9:324:11:392:-29.5995,0,-23.4853	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	0/1:141:80,61:80:2828:61:2176:-153.657,0,-212.313	0/1:134:81,53:81:2854:53:1904:-131.3,0,-216.761	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:66:35,31:35:1256:31:1112:-80.5234,0,-93.4773	1/1:49:0,49:0:0:49:1748:-157.525,-14.7505,0	0/1:41:16,25:16:572:25:877:-66.903,0,-39.4712	1/1:36:0,36:0:0:36:1292:-116.579,-10.8371,0	1/1:88:0,88:0:0:88:3152:-283.902,-26.4906,0	0/1:51:25,26:25:881:26:923:-68.0342,0,-64.2533	0/1:55:24,31:24:843:31:1099:-82.6566,0,-59.6313	0/1:43:18,25:18:644:25:884:-66.9335,0,-45.3463	1/1:54:0,54:0:0:54:1927:-173.704,-16.2556,0	1/1:23:0,23:0:0:23:828:-74.8423,-6.92369,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:24:19,5:19:684:5:176:-8.95937,0,-54.6656	0/1:113:56,57:56:1981:57:2039:-149.761,0,-144.545	1/1:77:0,77:0:0:77:2735:-246.362,-23.1793,0	0/1:76:58,18:58:2060:18:648:-35.7718,0,-162.79	1/1:47:1,46:1:36:46:1644:-144.646,-10.5501,0	0/1:37:20,17:20:711:17:608:-43.9124,0,-53.1775	0/1:48:37,11:37:1323:11:396:-21.5333,0,-104.922	0/1:145:67,78:67:2393:78:2760:-204.99,0,-171.976	1/1:138:0,138:0:0:138:4914:-442.403,-41.5421,0	1/1:24:0,24:0:0:24:864:-78.081,-7.22472,0	0/1:134:66,68:66:2359:68:2444:-179.505,0,-172.23	1/1:90:3,87:3:108:87:3115:-270.499,-17.0175,0	1/1:44:0,44:0:0:44:1567:-141.312,-13.2453,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	0/1:165:92,73:92:3263:73:2590:-183.679,0,-244.222	0/1:83:47,36:47:1671:36:1275:-90.0668,0,-125.691	0/1:40:18,22:18:635:22:779:-58.3909,0,-45.4325	.:.:.:.:.:.:.:.	0/1:63:26,37:26:928:37:1320:-100.134,0,-64.8734	0/1:27:16,11:16:563:11:387:-27.0381,0,-42.8714	0/1:84:50,34:50:1784:34:1224:-85.1774,0,-135.556	0/1:41:19,22:19:676:22:792:-59.2634,0,-48.8258	0/1:51:31,20:31:1112:20:720:-49.6874,0,-85.0388	1/1:73:1,72:1:36:72:2576:-228.49,-18.3769,0	1/1:69:0,69:0:0:69:2467:-222.196,-20.7711,0	0/1:128:46,82:46:1639:82:2926:-225.023,0,-109.266	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	0/1:98:51,47:51:1815:47:1677:-121.714,0,-134.13	0/1:72:44,28:44:1571:28:1008:-69.3613,0,-120.007	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:78:26,52:26:916:52:1852:-143.48,0,-59.2761	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:86:43,43:43:1536:43:1531:-112.194,0,-112.645	0/1:15:9,6:9:315:6:207:-14.4511,0,-24.1718	0/1:7:5,2:5:157:2:72:-4.72951,0,-12.3323	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:85:2,83:2:68:83:2959:-260.085,-19.1298,0	0/1:6:4,2:4:135:2:72:-5.03054,0,-10.6763	1/1:111:1,110:1:36:110:3936:-350.827,-29.8161,0	1/1:91:0,91:0:0:91:3243:-292.092,-27.3937,0	0/1:62:35,26:35:1252:26:932:-65.4716,0,-94.2625	1/1:70:0,70:0:0:70:2508:-225.903,-21.0721,0	0/1:47:24,23:24:839:23:820:-59.9718,0,-61.6789	0/1:87:66,21:66:2348:21:748:-41.4557,0,-185.39	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:73:0,73:0:0:73:2570:-231.546,-21.9752,0	0/1:41:17,24:17:599:24:860:-65.3769,0,-41.8959	0/1:19:12,7:12:424:7:248:-16.9446,0,-32.7768	1/1:123:0,123:0:0:123:4403:-396.431,-37.0267,0	0/1:53:19,34:19:654:34:1215:-93.7003,0,-43.2148	1/1:62:0,62:0:0:62:2206:-198.802,-18.6639,0	1/1:95:0,95:0:0:95:3408:-306.923,-28.5979,0	0/1:60:30,30:30:1067:30:1080:-79.4515,0,-78.2794	1/1:77:4,73:4:144:73:2608:-221.65,-9.86569,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:60:0,60:0:0:60:2148:-193.586,-18.0618,0	0/1:82:43,39:43:1533:39:1404:-101.961,0,-113.577	0/1:123:62,61:62:2211:61:2179:-159.349,0,-162.228	0/1:48:28,20:28:1008:20:712:-49.9572,0,-76.5869	0/1:60:23,37:23:819:37:1320:-100.978,0,-55.9698	1/1:34:0,34:0:0:34:1216:-109.733,-10.235,0	0/1:95:50,45:50:1771:45:1616:-117.028,0,-131.075	1/1:15:0,15:0:0:15:523:-47.3985,-4.51545,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:53:0,53:0:0:53:1892:-170.554,-15.9546,0	0/1:31:20,11:20:716:11:396:-26.6508,0,-55.4358	0/1:94:52,42:52:1829:42:1499:-106.905,0,-136.592	0/1:60:40,20:40:1414:20:707:-45.8928,0,-109.494	1/1:82:0,82:0:0:82:2940:-264.82,-24.6845,0	1/1:80:1,79:1:36:79:2836:-251.873,-20.4841,0
chr07	8360416	.	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chr07	8606567	.	A	T	17375.7	PASS	AB=0.481448;ABP=9.61708;AC=52;AF=0.27957;AN=186;AO=1084;CIGAR=1X;DP=4050;DPB=4050;DPRA=1.10376;EPP=2356.89;EPPR=6441.43;GTI=1;LEN=1;MEANALT=1.01754;MQM=59.9649;MQMR=59.9852;NS=93;NUMALT=1;ODDS=0.227177;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38497;QR=106147;RO=2965;RPL=0;RPP=2356.89;RPPR=6441.43;RPR=1084;RUN=1;SAF=0;SAP=2356.89;SAR=1084;SRF=0;SRP=6441.43;SRR=2965;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:28,33:28:1008:33:1172:-87.4243,0,-72.6735	0/1:32:10,22:10:360:22:792:-61.9727,0,-23.1113	0/1:94:38,56:38:1364:56:1992:-151.257,0,-94.7639	0/1:79:42,37:42:1503:37:1309:-94.319,0,-111.782	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:59:58,1:58:2084:1:36:0,-14.1625,-184.232	0/1:70:42,28:42:1489:28:996:-68.8828,0,-113.229	0/0:73:73,0:73:2598:0:0:0,-21.9752,-234.068	0/1:33:20,13:20:720:13:464:-32.1635,0,-55.1948	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:31:17,14:17:595:14:500:-36.0042,0,-44.5447	0/1:30:15,15:15:540:15:540:-39.9056,0,-39.9056	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:6:4,2:4:140:2:68:-4.65153,0,-11.1384	0/1:77:36,41:36:1296:41:1445:-107.165,0,-93.7646	0/0:69:69,0:69:2471:0:0:0,-20.7711,-222.643	0/1:67:27,40:27:972:40:1409:-106.937,0,-67.6289	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/1:36:23,13:23:824:13:464:-31.2604,0,-63.6462	0/1:51:28,23:28:1008:23:824:-59.1308,0,-75.6838	0/1:90:48,42:48:1724:42:1504:-108.559,0,-128.353	0/0:124:124,0:124:4420:0:0:0,-37.3277,-397.971	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:127:61,66:61:2188:66:2344:-172.989,0,-158.955	0/0:63:61,2:61:2192:2:72:0,-12.1282,-190.709	0/0:71:68,2:68:2448:2:72:0,-14.5952,-213.738	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:57:33,24:33:1184:24:852:-59.8417,0,-89.7096	0/1:80:56,24:56:2008:24:856:-53.2787,0,-156.866	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	.:.:.:.:.:.:.:.	0/1:54:29,25:29:1044:25:881:-63.3502,0,-78.0192	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:80:39,41:39:1404:41:1445:-106.261,0,-102.577	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:16:9,7:9:324:7:244:-17.4829,0,-24.6894	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:77:42,35:42:1508:35:1217:-86.652,0,-112.835	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:43:16,27:16:576:27:964:-74.1325,0,-39.2307	0/1:74:49,25:49:1756:25:875:-56.7899,0,-136.048	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:56:26,30:26:932:30:1064:-79.214,0,-67.3412	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:72:43,29:43:1520:29:1040:-72.2402,0,-115.416	0/1:36:22,14:22:792:14:496:-34.1372,0,-60.7686	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/0:41:40,1:40:1428:1:36:0,-8.74395,-125.219	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.062	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.56	0/1:24:16,8:16:572:8:284:-18.6786,0,-44.5887	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:83:40,43:40:1436:43:1520:-112.108,0,-104.552	0/1:81:39,42:39:1400:42:1487:-109.74,0,-101.915	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:29:14,15:14:504:15:540:-40.189,0,-36.9682	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/1:28:17,11:17:603:11:396:-27.5539,0,-46.1707	0/0:71:70,1:70:2511:1:21:0,-19.2732,-224.119	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/1:68:43,25:43:1544:25:888:-59.769,0,-118.783	0/0:51:48,3:48:1724:3:108:0,-5.27736,-145.37	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/1:58:34,24:34:1209:24:845:-58.9074,0,-91.6544	0/1:107:45,62:45:1611:62:2216:-167.495,0,-113.069	0/1:28:13,15:13:449:15:527:-39.3313,0,-32.3086	0/1:29:9,20:9:320:20:720:-56.3989,0,-20.4125	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	0/1:21:11,10:11:387:10:360:-26.4227,0,-28.8443	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481
chr07	9312459	.	A	C	26632.5	PASS	AB=0.520594;ABP=15.1737;AC=52;AF=0.276596;AN=188;AO=1724;CIGAR=1X;DP=5553;DPB=5553;DPRA=1.19798;EPP=3746.63;EPPR=8300.21;GTI=2;LEN=1;MEANALT=1;MQM=59.8915;MQMR=59.9976;NS=94;NUMALT=1;ODDS=0.382031;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58745;QR=136270;RO=3825;RPL=1723;RPP=3737.95;RPPR=8222.26;RPR=1;RUN=1;SAF=1723;SAP=3737.95;SAR=1;SRF=3816;SRP=8230.9;SRR=9;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:20,31:20:712:31:1010:-74.9011,0,-49.0541	0/1:40:22,18:22:765:18:644:-46.2494,0,-57.1265	0/1:117:67,50:67:2383:50:1753:-122.831,0,-179.507	0/1:118:59,59:59:2104:59:2037:-147.702,0,-154.108	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/0:36:36,0:36:1270:0:0:0,-10.8371,-114.601	0/1:57:32,25:32:1132:25:856:-60.1923,0,-85.0299	0/0:53:52,0:52:1839:0:0:0,-15.6536,-165.469	0/1:58:38,20:38:1348:20:695:-45.4117,0,-104.161	0/0:92:92,0:92:3275:0:0:0,-27.6948,-294.971	0/0:105:105,0:105:3730:0:0:0,-31.6081,-335.902	0/1:76:37,39:37:1328:39:1327:-96.8485,0,-96.944	0/1:70:28,42:28:996:42:1408:-105.937,0,-68.8828	0/1:59:38,21:38:1360:21:723:-47.6277,0,-104.94	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.585	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/1:34:15,19:15:540:19:641:-47.7666,0,-38.7015	0/1:64:37,27:37:1324:27:931:-64.8329,0,-100.196	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.082	0/1:63:20,43:20:720:43:1467:-113.352,0,-46.1639	0/0:81:80,1:80:2868:1:36:0,-20.7852,-254.759	0/1:11:7,4:7:248:4:140:-9.63325,0,-19.3529	0/1:76:44,32:44:1572:32:1092:-75.7044,0,-118.893	0/1:122:65,57:65:2328:57:1938:-137.963,0,-173.054	0/0:118:118,0:118:4177:0:0:0,-35.5215,-376.112	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/1:115:63,52:63:2235:52:1723:-120.724,0,-166.795	0/0:51:49,2:49:1739:2:72:0,-8.51581,-149.957	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:10:5,5:5:180:5:172:-12.8077,0,-13.5418	0/1:21:12,9:12:432:9:308:-21.7302,0,-32.8996	0/1:218:100,118:100:3563:118:3963:-291.248,0,-255.254	0/1:72:38,34:38:1356:34:1145:-81.6728,0,-100.666	0/1:63:35,28:35:1252:28:947:-66.5713,0,-94.0202	0/1:7:1,6:1:36:6:178:-14.2058,0,-1.49106	0/1:64:30,34:30:1080:34:1151:-84.623,0,-78.2473	0/1:34:14,20:14:495:20:643:-47.9398,0,-34.648	0/1:68:23,45:23:816:45:1550:-119.244,0,-53.2917	0/1:51:31,20:31:1099:20:704:-48.332,0,-83.8669	0/1:60:24,36:24:864:36:1229:-92.847,0,-60.0208	0/0:73:73,0:73:2592:0:0:0,-21.9752,-233.53	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:69:49,20:49:1752:20:692:-41.8275,0,-137.193	0/0:52:52,0:52:1824:0:0:0,-15.6536,-164.438	0/1:41:9,32:9:324:32:1118:-88.5838,0,-17.1636	0/1:56:28,28:28:996:28:964:-70.2088,0,-73.0972	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:90:52,38:52:1852:38:1282:-88.5814,0,-139.867	0/0:32:31,1:31:1088:1:36:0,-6.03468,-94.631	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:81:34,47:34:1220:47:1628:-122.421,0,-85.7234	0/1:35:16,19:16:576:19:654:-48.6415,0,-41.6389	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/0:102:102,0:102:3627:0:0:0,-30.7051,-326.637	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/0:70:70,0:70:2478:0:0:0,-21.0721,-223.273	0/1:40:12,28:12:432:28:959:-74.5756,0,-27.18	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:79:34,45:34:1220:45:1557:-116.637,0,-86.3254	0/1:85:27,58:27:968:58:1984:-153.243,0,-61.8498	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5438	0/1:51:21,30:21:752:30:1003:-75.2194,0,-52.6537	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/0:85:85,0:85:3007:0:0:0,-25.5875,-270.863	0/1:58:28,30:28:1004:30:1042:-76.582,0,-73.2161	0/0:88:88,0:88:3136:0:0:0,-26.4906,-282.467	0/0:69:67,0:67:2392:0:0:0,-20.169,-215.197	0/1:90:40,50:40:1419:50:1752:-130.868,0,-100.914	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:36:18,18:18:648:18:627:-45.9173,0,-47.8148	0/1:86:40,46:40:1428:46:1593:-117.767,0,-102.929	0/1:47:25,22:25:887:22:747:-53.3939,0,-65.9997	0/1:80:39,41:39:1404:41:1402:-102.392,0,-102.577	0/1:47:21,26:21:738:26:876:-64.9625,0,-52.593	0/1:125:60,65:60:2148:65:2144:-155.592,0,-155.959	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:71:70,0:70:2508:0:0:0,-21.0721,-225.609	0/0:87:87,0:87:3086:0:0:0,-26.1896,-277.969	0/1:55:23,32:23:820:32:1104:-83.1068,0,-57.5659	0/1:148:72,76:72:2558:76:2529:-183.307,0,-185.917	0/1:79:19,60:19:680:60:2037:-159.812,0,-37.7478	0/0:79:78,1:78:2776:1:36:0,-20.1831,-246.484	0/0:96:96,0:96:3431:0:0:0,-28.8989,-309.003
chr07	9312495	.	G	A	39572.7	PASS	AB=0.497021;ABP=3.37252;AC=54;AF=0.293478;AN=184;AO=2350;CIGAR=1X;DP=8128;DPB=8128;DPRA=1.16011;EPP=5079.95;EPPR=12443.6;GTI=1;LEN=1;MEANALT=1;MQM=59.7489;MQMR=59.9842;NS=92;NUMALT=1;ODDS=1.43834;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84021;QR=205307;RO=5777;RPL=3;RPP=5079.95;RPPR=12443.6;RPR=2347;RUN=1;SAF=0;SAP=5105.97;SAR=2350;SRF=0;SRP=12547.6;SRR=5777;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:23,8:23:820:8:284:-16.5714,0,-64.7906	0/1:103:41,62:41:1457:62:2224:-169.371,0,-100.418	0/1:63:31,32:31:1099:32:1143:-84.2023,0,-80.2546	0/1:161:74,87:74:2623:87:3112:-231.839,0,-187.85	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.726	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.759	0/0:98:98,0:98:3484:0:0:0,-29.5009,-313.771	0/1:160:88,72:88:3141:72:2588:-184.972,0,-234.746	0/0:106:105,0:105:3768:0:0:0,-31.6081,-338.959	0/1:146:75,71:75:2648:71:2543:-185.17,0,-194.615	0/0:41:41,0:41:1444:0:0:0,-12.3422,-130.253	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/1:91:46,45:46:1644:45:1620:-118.636,0,-120.855	0/1:80:30,50:30:1047:50:1778:-136.214,0,-70.4541	0/1:76:41,35:41:1448:35:1256:-90.467,0,-107.735	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:103:103,0:103:3598:0:0:0,-31.0061,-324.025	0/0:74:74,0:74:2622:0:0:0,-22.2762,-236.225	0/1:32:17,15:17:608:15:540:-39.2954,0,-45.4191	0/1:90:59,31:59:2107:31:1103:-72.4848,0,-162.806	0/0:129:129,0:129:4577:0:0:0,-38.8329,-412.095	0/1:60:20,40:20:716:40:1440:-111.832,0,-46.7059	0/0:46:43,3:43:1532:3:108:0,-3.77221,-128.098	0/1:98:61,37:61:2196:37:1328:-90.3213,0,-168.404	0/1:26:12,14:12:423:14:504:-37.8621,0,-30.5783	0/1:327:173,154:173:6149:154:5497:-396.325,0,-455.071	0/0:93:93,0:93:3302:0:0:0,-27.9958,-297.4	0/0:41:41,0:41:1446:0:0:0,-12.3422,-130.434	0/1:116:63,53:63:2243:53:1885:-134.992,0,-167.214	0/0:141:138,3:138:4886:3:108:0,-32.3701,-429.819	0/0:115:115,0:115:4109:0:0:0,-34.6184,-369.994	0/1:5:3,2:3:108:2:72:-5.32673,0,-8.57002	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	.:.:.:.:.:.:.:.	0/1:200:95,105:95:3401:105:3751:-277.526,0,-246.097	0/1:123:63,60:63:2225:60:2137:-155.551,0,-163.486	0/1:71:41,30:41:1463:30:1068:-75.0508,0,-110.592	.:.:.:.:.:.:.:.	0/1:132:85,47:85:3033:47:1692:-112.825,0,-233.463	0/1:34:20,14:20:716:14:495:-34.648,0,-54.5327	0/1:111:68,43:68:2413:43:1524:-103.901,0,-184.007	0/1:81:35,46:35:1234:46:1641:-123.485,0,-86.9792	0/1:72:33,39:33:1158:39:1394:-104.079,0,-82.8484	0/0:91:91,0:91:3223:0:0:0,-27.3937,-290.292	0/0:163:162,1:162:5778:1:32:0,-45.8686,-516.906	0/1:130:77,53:77:2738:53:1895:-131.677,0,-207.526	0/0:138:138,0:138:4835:0:0:0,-41.5421,-435.306	0/1:120:56,64:56:1975:64:2292:-170.412,0,-141.898	0/1:187:89,98:89:3153:98:3503:-259.186,0,-227.703	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:76:40,36:40:1440:36:1296:-94.0493,0,-107.019	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:7:3,4:3:104:4:140:-10.8374,0,-7.5956	0/1:126:65,61:65:2297:61:2184:-158.887,0,-169.058	0/1:19:4,15:4:144:15:532:-42.4935,0,-7.59405	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/0:74:74,0:74:2625:0:0:0,-22.2762,-236.267	0/0:116:116,0:116:4150:0:0:0,-34.9195,-373.682	0/1:9:2,7:2:68:7:252:-20.315,0,-3.74844	0/0:204:204,0:204:7246:0:0:0,-61.4101,-652.197	0/0:192:191,1:191:6816:1:36:0,-54.1995,-609.911	0/1:80:55,25:55:1945:25:900:-57.2386,0,-151.242	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.145	0/1:119:67,52:67:2399:52:1859:-131.766,0,-180.344	0/1:110:34,76:34:1224:76:2732:-213.007,0,-77.3537	0/0:22:22,0:22:770:0:0:0,-6.62266,-69.6193	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.986	0/1:105:54,51:54:1935:51:1820:-132.467,0,-142.818	0/1:19:10,9:10:356:9:324:-23.7859,0,-26.6617	0/0:102:102,0:102:3626:0:0:0,-30.7051,-326.546	0/1:82:41,41:41:1461:41:1456:-106.635,0,-107.1	0/0:194:194,0:194:6880:0:0:0,-58.3998,-619.27	0/0:109:109,0:109:3874:0:0:0,-32.8123,-348.853	0/1:127:59,68:59:2093:68:2443:-181.849,0,-150.407	0/0:103:102,1:102:3655:1:36:0,-27.4078,-325.555	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:67:67,0:67:2384:0:0:0,-20.169,-214.815	0/1:56:22,34:22:776:34:1220:-93.2491,0,-53.3045	0/1:194:98,96:98:3481:96:3439:-251.318,0,-255.101	0/1:143:66,77:66:2335:77:2759:-205.496,0,-167.23	0/1:50:24,26:24:837:26:909:-67.0717,0,-60.5899	0/1:95:40,55:40:1418:55:1958:-147.889,0,-99.318	0/1:175:83,92:83:2952:92:3277:-242.462,0,-213.232	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.181	0/0:91:91,0:91:3204:0:0:0,-27.3937,-288.582	0/0:73:73,0:73:2602:0:0:0,-21.9752,-234.428	0/1:29:8,21:8:288:21:756:-59.6327,0,-17.5375	0/1:66:39,27:39:1396:27:968:-67.5694,0,-106.071	0/1:78:25,53:25:876:53:1880:-145.947,0,-55.6739	0/0:78:78,0:78:2795:0:0:0,-23.4803,-251.789	0/0:135:134,1:134:4782:1:36:0,-37.0408,-426.939
chr07	9467735	.	C	T	47879.2	PASS	AB=0.489778;ABP=8.29294;AC=53;AF=0.281915;AN=188;AO=2870;CIGAR=1X;DP=9916;DPB=9916;DPRA=1.21524;EPP=6235.14;EPPR=15301;GTI=0;LEN=1;MEANALT=1;MQM=59.5167;MQMR=59.9462;NS=94;NUMALT=1;ODDS=2.6789;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102707;QR=251763;RO=7045;RPL=2870;RPP=6235.14;RPPR=15301;RPR=0;RUN=1;SAF=0;SAP=6235.14;SAR=2870;SRF=0;SRP=15301;SRR=7045;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:13,24:13:451:24:860:-66.5837,0,-29.7817	0/1:131:66,65:66:2368:65:2324:-169.941,0,-173.943	0/1:125:73,52:73:2599:52:1872:-131.106,0,-196.53	0/1:164:82,82:82:2936:82:2929:-214.335,0,-215.105	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.708	0/0:82:80,2:80:2851:2:72:0,-17.8477,-249.987	0/0:140:140,0:140:4996:0:0:0,-42.1442,-449.79	0/1:169:96,73:96:3436:73:2609:-183.463,0,-258.571	0/0:105:105,0:105:3751:0:0:0,-31.6081,-337.79	0/1:153:57,96:57:2040:96:3417:-261.641,0,-137.814	0/0:31:31,0:31:1112:0:0:0,-9.33193,-99.7631	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:83:32,51:32:1136:51:1832:-140.156,0,-77.5634	0/1:63:26,37:26:932:37:1332:-101.217,0,-65.234	0/1:54:31,23:31:1108:23:824:-58.2277,0,-83.7754	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.65	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:54:27,27:27:955:27:968:-71.149,0,-70.0092	0/1:163:74,89:74:2656:89:3187:-237.976,0,-190.218	0/0:150:150,0:150:5360:0:0:0,-45.1545,-482.529	0/1:65:22,43:22:788:43:1542:-119.49,0,-51.6778	0/0:78:77,1:77:2740:1:36:0,-19.8821,-243.245	0/1:112:69,43:69:2464:43:1544:-105.538,0,-188.299	0/1:76:39,37:39:1404:37:1324:-96.5838,0,-103.781	0/1:386:175,211:175:6256:211:7542:-562.551,0,-446.938	0/0:268:268,0:268:9612:0:0:0,-80.676,-865.026	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/1:324:164,160:164:5875:160:5735:-418.507,0,-431.288	0/0:102:101,1:101:3587:1:36:0,-27.1068,-319.436	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/1:47:19,28:19:680:28:1008:-76.8879,0,-47.3808	0/0:54:53,0:53:1875:0:0:0,-15.9546,-168.669	0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7716	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:12:4,8:4:144:8:283:-22.1421,0,-9.70126	0/1:191:93,98:93:3300:98:3502:-257.315,0,-239.666	0/1:195:118,77:118:4228:77:2748:-188.688,0,-321.994	0/1:60:24,36:24:864:36:1296:-98.8374,0,-60.0208	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:161:76,85:76:2703:85:3050:-225.911,0,-195.049	0/1:37:16,21:16:572:21:741:-55.8679,0,-40.6753	0/1:134:69,65:69:2467:65:2336:-170.147,0,-181.945	0/1:103:58,45:58:2080:45:1601:-113.306,0,-156.464	0/1:58:27,31:27:954:31:1116:-83.2896,0,-68.7142	0/0:132:132,0:132:4725:0:0:0,-39.736,-425.404	0/0:162:162,0:162:5787:0:0:0,-48.7669,-519.833	0/1:224:122,102:122:4341:102:3654:-261.611,0,-323.428	0/0:99:99,0:99:3539:0:0:0,-29.802,-318.633	0/1:168:94,74:94:3372:74:2660:-189.068,0,-253.122	0/1:233:130,103:130:4656:103:3708:-263.646,0,-349.062	0/1:26:18,8:18:648:8:288:-18.4406,0,-50.8251	0/1:174:78,96:78:2795:96:3448:-258.104,0,-199.41	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:30:10,20:10:356:20:716:-55.7286,0,-23.3503	0/1:154:110,44:110:3912:44:1566:-94.4856,0,-305.917	0/1:43:22,21:22:784:21:742:-54.156,0,-57.9396	0/1:20:17,3:17:596:3:108:-4.05457,0,-47.9472	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:126:126,0:126:4505:0:0:0,-37.9298,-405.617	0/0:97:96,1:96:3428:1:36:0,-25.6016,-305.136	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:207:207,0:207:7377:0:0:0,-62.3132,-663.489	0/0:246:241,5:241:8595:5:180:0,-57.5013,-756.97	0/1:78:42,36:42:1508:36:1287:-92.5773,0,-112.534	0/0:97:97,0:97:3466:0:0:0,-29.1999,-312.103	0/1:196:90,106:90:3220:106:3781:-281.476,0,-231.021	0/1:108:48,60:48:1720:60:2139:-160.256,0,-122.573	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/0:95:95,0:95:3399:0:0:0,-28.5978,-306.124	0/1:72:29,43:29:1040:43:1531:-116.368,0,-72.2402	0/1:10:4,6:4:144:6:210:-16.2075,0,-10.3033	0/0:48:47,1:47:1688:1:36:0,-10.8512,-148.609	0/1:89:45,44:45:1616:44:1580:-115.692,0,-118.938	0/0:182:180,2:180:6440:2:72:0,-47.9507,-572.848	0/0:217:217,0:217:7762:0:0:0,-65.3235,-698.608	0/1:143:77,66:77:2751:66:2368:-170.258,0,-204.74	0/0:151:146,5:146:5211:5:180:0,-28.9118,-452.586	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:153:152,1:152:5431:1:36:0,-42.4593,-485.317	0/1:104:70,34:70:2495:34:1188:-75.8349,0,-193.306	0/1:233:133,100:133:4768:100:3576:-251.894,0,-359.137	0/1:97:61,36:61:2166:36:1292:-87.3839,0,-166.005	0/1:50:25,25:25:900:25:900:-66.2672,0,-66.2695	0/1:94:45,49:45:1612:49:1750:-129.458,0,-117.073	0/1:128:57,71:57:2036:71:2552:-191.37,0,-144.979	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:35:22,13:22:779:13:457:-30.9242,0,-59.8914	0/1:77:38,39:38:1355:39:1391:-102.274,0,-99.0704	0/1:56:22,34:22:775:34:1213:-92.615,0,-53.2135	0/0:159:159,0:159:5667:0:0:0,-47.8638,-510.138	0/0:92:92,0:92:3274:0:0:0,-27.6948,-294.88
chr07	10019609	.	G	C	29310.6	PASS	AB=0.425373;ABP=158.578;AC=56;AF=0.297872;AN=188;AO=1381;CIGAR=1X;DP=5365;DPB=5365;DPRA=1.27891;EPP=26.799;EPPR=24.3891;GTI=1;LEN=1;MEANALT=1.0339;MQM=60;MQMR=59.996;NS=94;NUMALT=1;ODDS=1.11006;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49266;QR=142230;RO=3982;RPL=752;RPP=26.799;RPPR=24.3891;RPR=629;RUN=1;SAF=0;SAP=3001.81;SAR=1381;SRF=0;SRP=8649.81;SRR=3982;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:97:57,40:57:2032:40:1423:-99.166,0,-153.953	0/1:98:57,41:57:2040:41:1468:-102.915,0,-154.371	0/1:107:60,47:60:2144:47:1679:-119.186,0,-161.018	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/1:101:54,47:54:1924:47:1667:-119.913,0,-143.033	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:74:40,34:40:1428:34:1216:-87.4703,0,-106.541	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:44:44,0:44:1552:0:0:0,-13.2453,-139.969	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	0/1:39:17,22:17:612:22:788:-59.5046,0,-43.6733	0/1:23:11,12:11:381:12:428:-31.9351,0,-27.6969	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.484	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	0/1:85:54,31:54:1911:31:1099:-73.6319,0,-146.679	0/0:88:88,0:88:3126:0:0:0,-26.4906,-281.567	0/1:47:23,24:23:828:24:864:-63.9342,0,-60.6957	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/1:66:47,19:47:1675:19:675:-41.209,0,-131.168	0/1:37:27,10:27:964:10:356:-21.2431,0,-75.9387	0/1:185:103,82:103:3679:82:2940:-209.143,0,-275.623	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.957	0/0:14:13,1:13:468:1:36:0,-0.616145,-38.8614	0/1:109:72,37:72:2576:37:1324:-86.6498,0,-199.277	0/0:134:133,1:133:4780:1:36:0,-36.7397,-426.756	0/0:80:77,3:77:2760:3:104:0,-14.3796,-238.939	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	1/1:3:0,3:0:0:3:105:-9.79597,-0.90309,0	0/1:10:7,3:7:244:3:108:-7.06487,0,-19.2891	0/1:76:40,35:40:1427:35:1247:-89.5971,0,-105.79	0/1:128:80,48:80:2864:48:1728:-117.273,0,-219.466	0/1:35:20,15:20:697:15:521:-36.6803,0,-52.5146	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:113:79,34:79:2793:34:1205:-74.7384,0,-217.594	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:88:61,27:61:2159:27:951:-59.4137,0,-168.086	0/1:36:18,18:18:648:18:644:-47.4535,0,-47.8148	0/1:43:21,22:21:752:22:775:-57.1269,0,-55.062	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:73:73,0:73:2615:0:0:0,-21.9752,-235.597	0/1:138:97,41:97:3483:41:1457:-89.8827,0,-272.138	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/1:113:54,59:54:1919:59:2098:-155.073,0,-138.97	0/1:87:39,48:39:1380:48:1709:-127.904,0,-98.3091	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:101:61,40:61:2192:40:1396:-95.5302,0,-167.141	0/0:23:23,0:23:807:0:0:0,-6.92369,-72.9492	0/1:16:11,5:11:392:5:180:-11.7356,0,-30.8036	0/1:74:40,34:40:1436:34:1209:-86.8379,0,-107.261	0/1:46:29,17:29:1035:17:608:-41.2046,0,-79.6157	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:73:73,0:73:2602:0:0:0,-21.9752,-234.428	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/1:9:6,3:6:207:3:108:-7.3659,0,-16.2576	0/0:134:134,0:134:4761:0:0:0,-40.338,-428.65	0/0:159:156,3:156:5596:3:108:0,-37.7886,-493.686	0/1:75:44,31:44:1580:31:1112:-77.8141,0,-119.914	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:115:76,39:76:2724:39:1400:-91.6807,0,-210.785	0/1:74:29,45:29:1027:45:1608:-122.734,0,-70.466	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:44:18,26:18:644:26:936:-71.3141,0,-45.0219	0/1:23:15,8:15:536:8:284:-18.9797,0,-41.6511	0/0:58:57,1:57:2040:1:36:0,-13.8615,-180.274	0/1:42:17,25:17:597:25:892:-67.9564,0,-41.4129	0/0:43:43,0:43:1519:0:0:0,-12.9443,-137.002	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:76:45,31:45:1599:31:1108:-77.1527,0,-121.321	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.849	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:65:36,29:36:1283:29:1040:-74.3474,0,-96.2057	0/1:114:68,46:68:2440:46:1643:-113.84,0,-185.538	0/1:64:33,31:33:1188:31:1112:-81.1254,0,-87.9627	0/1:25:15,10:15:540:10:356:-24.8555,0,-41.4108	0/1:34:18,16:18:644:16:561:-40.5821,0,-48.0556	0/1:49:24,24:24:855:24:864:-63.2733,0,-62.4611	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:42:42,0:42:1484:0:0:0,-12.6433,-133.852	0/1:30:15,15:15:540:15:536:-39.5439,0,-39.9056	0/1:71:44,27:44:1563:27:966:-65.8837,0,-119.588	0/1:27:9,18:9:320:18:648:-50.5241,0,-21.0145	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299
chr07	10596471	.	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chr07	10597005	.	G	A	40899.5	PASS	AB=0.615074;ABP=430.305;AC=52;AF=0.27957;AN=186;AO=2295;CIGAR=1X;DP=5733;DPB=5733;DPRA=1.57763;EPP=4925.92;EPPR=7403.39;GTI=6;LEN=1;MEANALT=1.23333;MQM=59.9987;MQMR=59.9977;NS=93;NUMALT=1;ODDS=2.23241;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82006;QR=121200;RO=3408;RPL=12;RPP=4882.85;RPPR=7403.39;RPR=2283;RUN=1;SAF=2290;SAP=4943.2;SAR=5;SRF=3408;SRP=7403.39;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:20,30:20:716:30:1072:-81.3813,0,-49.3566	0/1:46:9,37:9:324:37:1328:-105.975,0,-15.6585	0/1:75:44,31:44:1536:31:1085:-75.3797,0,-115.949	0/1:105:34,70:34:1224:70:2500:-193.586,0,-78.8001	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:27:27,0:27:944:0:0:0,-8.12781,-85.2713	0/0:74:74,0:74:2649:0:0:0,-22.2762,-238.654	0/1:103:34,69:34:1220:69:2480:-192.447,0,-79.1007	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.627	0/1:31:11,20:11:396:20:712:-55.0747,0,-26.6508	0/0:62:62,0:62:2184:0:0:0,-18.6639,-196.824	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.395	0/1:54:19,35:19:655:35:1260:-97.4499,0,-43.0155	0/1:88:34,54:34:1187:54:1940:-148.386,0,-80.6434	0/1:56:20,36:20:707:36:1296:-100.086,0,-47.0969	0/0:46:46,0:46:1624:0:0:0,-13.8474,-146.446	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5438	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/1:64:26,34:26:908:34:1174:-87.54,0,-63.6123	0/1:157:47,110:47:1684:110:3924:-306.092,0,-104.585	0/0:91:90,0:90:3217:0:0:0,-27.0927,-289.391	0/1:87:24,63:24:860:63:2229:-174.683,0,-51.5322	0/0:75:74,1:74:2648:1:36:0,-18.979,-234.968	0/1:65:23,42:23:815:42:1482:-114.104,0,-54.1038	0/1:81:48,33:48:1720:33:1184:-82.4849,0,-130.702	0/1:152:55,96:55:1968:96:3399:-260.309,0,-131.58	0/0:132:132,0:132:4689:0:0:0,-39.736,-422.173	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:132:50,82:50:1792:82:2948:-225.817,0,-121.827	0/0:55:54,1:54:1928:1:36:0,-12.9584,-170.198	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/1:13:11,2:11:396:2:57:-1.49992,0,-32.0694	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:169:66,97:66:2345:97:3461:-262.28,0,-161.887	0/1:93:43,49:43:1523:49:1756:-130.269,0,-109.308	0/1:61:32,29:32:1126:29:1044:-75.912,0,-83.2838	.:.:.:.:.:.:.:.	0/1:117:40,76:40:1402:76:2728:-210.483,0,-91.194	0/1:34:15,19:15:525:19:684:-51.6553,0,-37.343	0/1:133:50,81:50:1775:81:2889:-220.45,0,-120.238	0/1:40:13,27:13:468:27:968:-75.3962,0,-30.4184	0/1:42:20,22:20:684:22:788:-58.6015,0,-49.2332	0/0:66:66,0:66:2333:0:0:0,-19.868,-210.229	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/1:107:36,71:36:1288:71:2529:-195.65,0,-84.0134	0/0:61:60,1:60:2147:1:36:0,-14.7646,-189.899	0/1:61:20,41:20:716:41:1468:-114.053,0,-46.4049	0/1:108:55,53:55:1972:53:1900:-138.767,0,-145.244	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:73:33,40:33:1175:40:1413:-105.49,0,-84.0818	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:12:9,3:9:324:3:104:-6.09045,0,-25.8935	0/1:106:27,78:27:968:78:2804:-220.671,0,-55.5079	0/1:38:6,32:6:212:32:1125:-90.1169,0,-7.98566	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:76:75,1:75:2672:1:36:0,-19.28,-237.125	0/0:73:72,1:72:2571:1:36:0,-18.3769,-228.041	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:61:60,1:60:2143:1:36:0,-14.7646,-189.539	0/0:104:101,3:101:3612:3:108:0,-21.2319,-315.211	0/1:70:35,34:35:1248:34:1216:-88.6157,0,-91.4941	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.477	0/1:79:30,48:30:1072:48:1716:-130.885,0,-72.9524	0/1:81:37,44:37:1299:44:1569:-117.116,0,-92.827	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:12:11,0:11:387:0:0:0,-3.31133,-34.8068	0/1:38:13,25:13:468:25:900:-69.8815,0,-31.0205	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:117:117,0:117:4167:0:0:0,-35.2205,-375.211	0/1:47:18,29:18:644:29:1040:-79.766,0,-44.1422	0/0:108:108,0:108:3831:0:0:0,-32.5112,-344.989	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:72:22,50:22:788:50:1776:-138.449,0,-49.5706	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:31:30,1:30:1064:1:36:0,-5.73365,-92.4734	0/1:70:17,53:17:612:53:1904:-150.566,0,-34.3413	0/1:134:60,74:60:2140:74:2654:-198.767,0,-152.53	0/1:54:22,32:22:779:32:1152:-87.7345,0,-54.1764	0/1:49:18,31:18:640:31:1116:-86.0012,0,-43.1788	0/1:34:10,22:10:342:22:788:-61.2522,0,-21.1193	0/1:88:28,60:28:1004:60:2156:-167.816,0,-64.1852	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.006	0/1:63:18,42:18:629:42:1504:-117.233,0,-38.5137	0/1:178:72,106:72:2548:106:3800:-288.614,0,-175.986	0/1:61:7,52:7:239:52:1868:-150.279,0,-3.72624	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:59:59,0:59:2099:0:0:0,-17.7608,-189.179
chr07	10690509	.	CGGAC	CGGAT	112154	PASS	AB=0.54323;ABP=61.3998;AC=136;AF=0.723404;AN=188;AO=4698;CIGAR=4M1X;DP=6365;DPB=6365;DPRA=34.2097;EPP=5999.94;EPPR=3492.65;GTI=4;LEN=1;MEANALT=1.43011;MQM=59.984;MQMR=59.9827;NS=94;NUMALT=1;ODDS=0.162206;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168120;QR=54031;RO=1623;RPL=4150;RPP=5999.94;RPPR=3492.65;RPR=548;RUN=1;SAF=4698;SAP=10204.6;SAR=0;SRF=1623;SRP=3527.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:17,23:17:572:23:828:-62.8029,0,-39.7579	0/1:73:31,42:31:1011:42:1508:-114.039,0,-69.316	0/1:109:30,79:30:1023:79:2827:-221.856,0,-59.5653	0/1:134:59,74:59:1968:74:2650:-198.478,0,-137.126	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:72:35,37:35:1191:37:1317:-97.1565,0,-85.8157	1/1:104:0,103:0:0:103:3696:-332.531,-31.0061,0	0/1:66:33,33:33:1064:33:1176:-86.2798,0,-76.1878	1/1:78:0,78:0:0:78:2783:-250.71,-23.4803,0	1/1:91:0,91:0:0:91:3260:-293.621,-27.3937,0	0/1:74:31,43:31:1026:43:1527:-115.446,0,-70.3652	0/1:75:39,36:39:1278:36:1284:-93.2862,0,-92.7335	0/1:65:24,41:24:821:41:1472:-113.209,0,-54.6373	1/1:56:0,56:0:0:56:1995:-179.823,-16.8577,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:46:16,30:16:536:30:1080:-83.6659,0,-34.711	0/1:120:79,40:79:2613:40:1419:-91.8058,0,-199.246	1/1:166:0,163:0:0:163:5811:-522.788,-49.0679,0	0/1:54:42,12:42:1367:12:432:-22.9656,0,-107.065	1/1:74:0,73:0:0:73:2574:-231.556,-21.9752,0	0/1:55:21,34:21:689:34:1205:-92.1972,0,-45.7626	0/1:58:30,28:30:1030:28:1000:-72.8556,0,-75.5491	0/1:157:75,82:75:2423:82:2932:-216.852,0,-171.065	1/1:162:0,161:0:0:161:5731:-515.655,-48.4658,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:150:61,89:61:2009:89:3182:-241.445,0,-135.928	1/1:67:0,65:0:0:65:2316:-208.375,-19.567,0	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:3:1,2:1:30:2:72:-5.93363,0,-2.09648	0/1:11:2,9:2:66:9:316:-25.4675,0,-2.95662	0/1:115:38,76:38:1268:76:2683:-207.035,0,-79.7399	0/1:49:22,27:22:753:27:964:-72.3264,0,-53.3361	0/1:37:10,27:10:344:27:964:-75.9387,0,-20.1539	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:138:70,67:70:2347:67:2400:-174.656,0,-169.893	0/1:35:9,26:9:296:26:928:-73.3016,0,-16.4232	0/1:71:35,36:35:1165:36:1296:-95.5708,0,-83.7747	0/1:67:29,37:29:1001:37:1332:-99.9546,0,-70.1736	0/1:57:22,35:22:738:35:1260:-96.5468,0,-49.5744	1/1:90:0,88:0:0:88:3142:-282.676,-26.4906,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	0/1:97:48,48:48:1585:48:1701:-124.233,0,-113.793	1/1:81:0,80:0:0:80:2855:-256.926,-24.0824,0	0/1:67:34,32:34:1147:32:1137:-82.4083,0,-83.3043	0/1:123:39,83:39:1319:83:2974:-230.818,0,-81.9604	0/0:2:2,0:2:66:0:0:0,-0.60206,-6.26795	0/1:157:73,78:73:2402:78:2800:-206.469,0,-170.675	1/1:51:0,50:0:0:50:1792:-161.252,-15.0515,0	0/1:9:4,5:4:133:5:176:-13.4757,0,-9.58936	0/1:70:34,35:34:1136:35:1256:-92.3601,0,-81.5406	0/1:40:15,25:15:503:25:896:-68.9192,0,-33.5487	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:69:0,68:0:0:68:2440:-219.495,-20.47,0	1/1:122:0,122:0:0:122:4366:-393.114,-36.7257,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:83:0,83:0:0:83:2975:-267.953,-24.9855,0	1/1:80:0,80:0:0:80:2866:-258.177,-24.0824,0	0/1:67:30,37:30:993:37:1328:-99.6532,0,-69.5034	1/1:50:0,47:0:0:47:1684:-151.49,-14.1484,0	0/1:110:61,47:61:1970:47:1688:-119.413,0,-144.779	0/1:101:50,49:50:1668:49:1760:-128.648,0,-120.369	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:58:23,35:23:760:35:1256:-95.8855,0,-51.2487	0/1:17:5,12:5:165:12:432:-34.1037,0,-10.0574	1/1:95:0,94:0:0:94:3376:-303.695,-28.2968,0	0/1:60:22,37:22:753:37:1332:-102.169,0,-50.0726	1/1:109:0,107:0:0:107:3836:-345.145,-32.2102,0	1/1:128:0,128:0:0:128:4588:-413.084,-38.5318,0	0/1:46:30,16:30:1026:16:569:-37.6945,0,-78.7997	1/1:77:2,75:2:66:75:2692:-236.256,-16.9111,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:92:0,92:0:0:92:3300:-297.214,-27.6948,0	0/1:52:31,20:31:1026:20:720:-49.4164,0,-76.9295	0/1:113:58,54:58:1976:54:1940:-140.854,0,-144.099	0/1:68:31,37:31:1030:37:1328:-99.3522,0,-72.5328	0/1:52:20,31:20:672:31:1116:-85.0393,0,-45.0841	0/1:56:24,32:24:801:32:1148:-86.7722,0,-55.5421	0/1:96:45,50:45:1496:50:1796:-132.965,0,-105.971	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:86:0,85:0:0:85:3049:-274.278,-25.5876,0	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	0/1:45:15,30:15:510:30:1076:-83.6065,0,-32.6752	0/1:85:31,54:31:1028:54:1935:-148.838,0,-67.2349	0/1:72:34,38:34:1135:38:1364:-101.387,0,-80.7756	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:116:0,116:0:0:116:4159:-374.491,-34.9195,0
chr07	10690589	.	T	C	110762	PASS	AB=0.506255;ABP=4.64026;AC=134;AF=0.72043;AN=186;AO=5484;CIGAR=1X;DP=7859;DPB=7859;DPRA=0;EPP=11911.4;EPPR=5153.74;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9816;MQMR=59.8179;NS=93;NUMALT=1;ODDS=0.719641;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194873;QR=85036;RO=2372;RPL=0;RPP=11911.4;RPPR=5153.74;RPR=5484;RUN=1;SAF=5484;SAP=11911.4;SAR=0;SRF=2372;SRP=5153.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:20,12:20:712:12:419:-28.4097,0,-54.7737	0/1:168:81,87:81:2916:87:3075:-226.408,0,-212.076	0/1:69:49,20:49:1747:20:716:-43.9966,0,-136.741	0/1:122:74,48:74:2648:48:1706:-117.099,0,-201.812	1/1:79:0,78:0:0:78:2784:-250.59,-23.4803,0	1/1:60:0,60:0:0:60:2142:-193.047,-18.0618,0	1/1:134:0,133:0:0:133:4720:-424.752,-40.037,0	0/1:163:84,79:84:3024:79:2783:-201.642,0,-223.322	1/1:51:0,51:0:0:51:1796:-161.921,-15.3525,0	0/1:101:63,38:63:2264:38:1355:-91.8457,0,-173.618	1/1:86:0,86:0:0:86:3034:-272.921,-25.8886,0	1/1:87:0,87:0:0:87:3110:-280.127,-26.1896,0	0/1:86:40,46:40:1432:46:1631:-121.189,0,-103.274	0/1:93:43,50:43:1536:50:1764:-131.045,0,-110.534	0/1:51:28,23:28:1004:23:828:-59.4916,0,-75.294	1/1:64:0,63:0:0:63:2222:-199.884,-18.9649,0	1/1:86:0,86:0:0:86:3058:-275.449,-25.8886,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	0/1:69:33,36:33:1188:36:1275:-94.2812,0,-86.4093	0/1:153:46,107:46:1644:107:3765:-292.996,0,-102.191	1/1:140:0,140:0:0:140:4942:-444.934,-42.1442,0	0/1:60:27,33:27:972:33:1184:-88.8065,0,-69.365	1/1:45:0,45:0:0:45:1596:-143.93,-13.5464,0	0/1:83:43,40:43:1536:40:1427:-103.741,0,-113.548	0/1:55:11,44:11:396:44:1543:-122.602,0,-19.4257	0/1:248:113,135:113:4048:135:4809:-358.312,0,-289.845	1/1:107:0,107:0:0:107:3824:-344.358,-32.2102,0	1/1:42:0,42:0:0:42:1488:-134.215,-12.6433,0	0/1:179:69,110:69:2480:110:3919:-299.02,0,-169.569	1/1:98:1,97:1:36:97:3446:-306.755,-25.9027,0	1/1:128:0,128:0:0:128:4587:-412.994,-38.5318,0	.:.:.:.:.:.:.:.	1/1:13:0,13:0:0:13:459:-41.6441,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:25:5,20:5:180:20:716:-57.242,0,-9.02631	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	0/1:168:80,88:80:2876:88:3143:-232.522,0,-208.501	0/1:99:51,48:51:1811:48:1723:-125.554,0,-133.468	0/1:111:65,46:65:2332:46:1636:-114.114,0,-176.685	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:111:41,70:41:1472:70:2482:-190.214,0,-99.361	0/1:39:16,23:16:572:23:819:-62.2914,0,-40.0559	0/1:109:45,64:45:1612:64:2271:-171.84,0,-112.367	0/1:81:38,43:38:1349:43:1527:-113.339,0,-97.3248	0/1:62:37,25:37:1328:25:880:-60.8527,0,-101.071	1/1:65:0,65:0:0:65:2316:-208.7,-19.567,0	1/1:102:1,101:1:36:101:3588:-319.528,-27.1068,0	0/1:130:77,53:77:2760:53:1888:-131.065,0,-209.478	1/1:84:0,84:0:0:84:2982:-268.614,-25.2865,0	0/1:197:105,92:105:3748:92:3262:-234.499,0,-278.216	0/1:112:64,48:64:2300:48:1704:-119.931,0,-173.545	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:114:55,59:55:1980:59:2088:-153.873,0,-144.157	1/1:48:0,48:0:0:48:1696:-152.903,-14.4494,0	0/1:15:8,7:8:288:7:247:-18.0576,0,-21.752	0/1:79:58,21:58:2071:21:748:-43.8639,0,-162.876	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:72:0,72:0:0:72:2555:-230.199,-21.6742,0	1/1:97:0,97:0:0:97:3459:-311.523,-29.1999,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:113:0,113:0:0:113:4012:-361.268,-34.0164,0	1/1:131:2,129:2:72:129:4604:-407.687,-32.5982,0	0/1:93:50,43:50:1769:43:1509:-108.105,0,-131.495	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	0/1:145:62,83:62:2209:83:2947:-221.816,0,-155.413	0/1:66:42,24:42:1504:24:864:-58.2146,0,-115.787	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:56:0,56:0:0:56:1988:-179.194,-16.8577,0	0/1:83:35,48:35:1260:48:1715:-129.649,0,-88.72	0/1:30:20,10:20:712:10:360:-23.7134,0,-55.3758	1/1:59:0,59:0:0:59:2112:-190.335,-17.7608,0	0/1:68:47,21:47:1688:21:756:-47.8972,0,-131.735	1/1:133:0,133:0:0:133:4741:-426.85,-40.037,0	1/1:112:0,112:0:0:112:4020:-361.988,-33.7154,0	0/1:163:69,94:69:2480:94:3349:-252.56,0,-174.377	1/1:126:0,126:0:0:126:4471:-402.563,-37.9298,0	1/1:1:0,1:0:0:1:28:-2.79973,-0.30103,0	1/1:101:0,101:0:0:101:3574:-321.87,-30.404,0	0/1:97:26,71:26:936:71:2536:-199.254,0,-55.3596	0/1:144:77,67:77:2764:67:2367:-169.936,0,-204.461	0/1:117:53,64:53:1908:64:2235:-166.192,0,-136.774	0/1:60:34,26:34:1224:26:909:-64.0622,0,-92.4052	0/1:100:53,47:53:1904:47:1675:-120.933,0,-141.518	0/1:144:84,60:84:3020:60:2124:-148.078,0,-228.678	1/1:42:0,42:0:0:42:1497:-135.025,-12.6433,0	1/1:72:0,72:0:0:72:2575:-231.999,-21.6742,0	1/1:72:0,72:0:0:72:2548:-229.569,-21.6742,0	0/1:74:31,43:31:1116:43:1524:-115.177,0,-78.3659	0/1:105:42,63:42:1512:63:2229:-169.266,0,-104.735	0/1:76:54,22:54:1940:22:784:-48.0056,0,-151.998	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	1/1:120:0,120:0:0:120:4235:-381.33,-36.1236,0
chr07	10690619	.	G	A	110239	PASS	AB=0.506126;ABP=6.12322;AC=54;AF=0.287234;AN=188;AO=4856;CIGAR=1X;DP=15828;DPB=15828;DPRA=1.15002;EPP=10547.7;EPPR=23811;GTI=1;LEN=1;MEANALT=1.03175;MQM=52.6075;MQMR=59.9851;NS=94;NUMALT=1;ODDS=1.81812;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173675;QR=388896;RO=10968;RPL=2380;RPP=7.13145;RPPR=3.0491;RPR=2476;RUN=1;SAF=2380;SAP=7.13145;SAR=2476;SRF=5490;SRP=3.03881;SRR=5478;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:23,37:23:813:37:1324:-100.645,0,-55.4273	0/1:270:149,121:149:5294:121:4352:-308.683,0,-395.318	0/1:261:99,162:99:3507:162:5795:-435.846,0,-237.271	0/1:268:113,155:113:4031:155:5490:-410.852,0,-282.303	0/0:141:141,0:141:5017:0:0:0,-42.4452,-451.677	0/0:119:119,0:119:4221:0:0:0,-35.8226,-380.07	0/0:259:259,0:259:9208:0:0:0,-77.9668,-828.692	0/1:267:110,157:110:3889:157:5613:-416.566,0,-269.829	0/0:153:152,0:152:5339:0:0:0,-45.7566,-480.287	0/1:186:99,87:99:3473:87:3124:-224.702,0,-256.787	0/0:146:145,1:145:5094:1:36:0,-40.3521,-454.381	0/0:174:174,0:174:6161:0:0:0,-52.3792,-554.59	0/1:171:94,77:94:3345:77:2756:-195.064,0,-249.791	0/1:159:90,69:90:3180:69:2467:-172.895,0,-238.561	0/1:116:52,64:52:1848:64:2281:-169.257,0,-131.678	0/0:112:112,0:112:3941:0:0:0,-33.7154,-354.882	0/0:173:173,0:173:6124:0:0:0,-52.0782,-551.264	0/0:129:129,0:129:4605:0:0:0,-38.8329,-414.614	0/1:128:67,61:67:2354:61:2180:-155.917,0,-173.585	0/1:313:163,149:163:5784:149:5328:-381.74,0,-426.397	0/0:344:344,0:344:12230:0:0:0,-103.554,-1100.54	0/1:133:50,83:50:1792:83:2942:-222.616,0,-121.525	0/0:100:99,1:99:3497:1:36:0,-26.5362,-311.373	0/1:163:80,83:80:2833:83:2965:-216.751,0,-206.141	0/1:146:86,60:86:3031:60:2139:-145.82,0,-229.068	0/1:532:285,247:285:10050:247:8788:-624.845,0,-744.291	0/0:310:310,0:310:11039:0:0:0,-93.3193,-993.407	0/0:68:68,0:68:2381:0:0:0,-20.47,-214.545	0/1:363:191,172:191:6788:172:6131:-436.214,0,-501.702	0/0:167:166,1:166:5893:1:36:0,-46.6737,-526.881	0/0:240:230,10:230:8187:10:360:0,-39.7892,-704.387	0/1:18:3,15:3:108:15:536:-42.6328,0,-4.65663	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:30:20,10:20:701:10:360:-23.487,0,-54.3808	0/1:15:10,5:10:356:5:180:-11.8993,0,-27.8658	0/1:377:210,167:210:7456:167:5964:-419.955,0,-557.599	0/1:183:78,105:78:2789:105:3750:-281.187,0,-196.16	0/1:186:91,95:91:3220:95:3401:-248.082,0,-234.028	0/1:10:9,1:9:320:1:36:-0.556513,0,-26.1321	0/1:184:105,79:105:3717:79:2840:-198.802,0,-279.336	0/1:82:47,35:47:1675:35:1260:-88.464,0,-126.352	0/1:215:102,113:102:3617:113:4068:-297.945,0,-261.013	0/1:177:94,83:94:3309:83:2984:-214.222,0,-244.749	0/1:127:67,60:67:2349:60:2152:-154.139,0,-173.436	0/0:150:149,1:149:5281:1:36:0,-41.5959,-471.871	0/0:161:160,1:160:5657:1:36:0,-44.8676,-505.653	0/1:281:148,133:148:5259:133:4753:-340.453,0,-388.859	0/0:167:167,0:167:5972:0:0:0,-50.272,-537.585	0/1:321:155,166:155:5520:166:5960:-434.931,0,-400.296	0/1:209:93,116:93:3316:116:4153:-308.37,0,-235.741	0/1:24:11,13:11:392:13:464:-34.7014,0,-28.3953	0/1:201:106,95:106:3799:95:3420:-245.262,0,-281.6	0/0:69:69,0:69:2442:0:0:0,-20.7711,-220.035	0/1:22:7,15:7:252:15:536:-40.7546,0,-16.4063	0/1:185:68,117:68:2400:117:4199:-319.825,0,-160.565	0/1:57:27,30:27:964:30:1071:-77.9985,0,-69.9181	0/1:11:4,7:4:144:7:252:-19.5726,0,-10.0023	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:150:149,0:149:5290:0:0:0,-44.8535,-475.875	0/0:214:214,0:214:7578:0:0:0,-64.4204,-682.064	0/1:19:6,13:6:216:13:464:-36.1378,0,-14.0709	0/0:202:202,0:202:7213:0:0:0,-60.8081,-649.225	0/0:291:287,4:287:10173:4:144:0,-74.3734,-902.277	0/1:160:72,88:72:2554:88:3156:-234.678,0,-181.943	0/0:124:124,0:124:4374:0:0:0,-37.3277,-393.834	0/1:261:134,127:134:4776:127:4524:-325.212,0,-351.428	0/1:180:41,139:41:1472:139:4994:-390.549,0,-78.5907	0/0:76:75,1:75:2680:1:36:0,-19.3115,-237.879	0/0:138:138,0:138:4887:0:0:0,-41.5421,-439.985	0/1:179:112,67:112:3996:67:2393:-160.635,0,-305.947	0/1:42:15,27:15:540:27:972:-74.9556,0,-36.2933	0/0:172:172,0:172:6120:0:0:0,-51.7772,-550.846	0/1:127:43,84:43:1531:84:2988:-229.281,0,-99.8515	0/0:299:299,0:299:10622:0:0:0,-90.008,-955.897	0/0:213:213,0:213:7573:0:0:0,-64.1194,-681.609	0/1:324:184,140:184:6483:140:5001:-349.065,0,-486.027	0/0:205:202,3:202:7189:3:108:0,-51.7399,-637.095	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:174:174,0:174:6223:0:0:0,-52.3792,-560.166	0/1:207:120,87:120:4268:87:3120:-212.833,0,-321.985	0/1:324:156,168:156:5516:168:5997:-437.896,0,-399.025	0/1:204:112,92:112:3924:92:3287:-233.213,0,-291.945	0/1:135:61,74:61:2162:74:2630:-195.274,0,-154.207	0/1:179:83,96:83:2932:96:3448:-255.188,0,-210.23	0/1:296:149,146:149:5243:146:5226:-378.754,0,-382.846	0/0:91:91,0:91:3223:0:0:0,-27.3937,-290.292	0/0:151:151,0:151:5313:0:0:0,-45.4555,-478.307	0/0:145:145,0:145:5102:0:0:0,-43.6493,-459.327	0/1:114:66,48:66:2337:48:1719:-118.825,0,-176.271	0/1:188:107,81:107:3742:81:2895:-202.363,0,-280.389	0/1:159:47,112:47:1679:112:4019:-310.596,0,-103.533	0/0:125:125,0:125:4423:0:0:0,-37.6287,-398.241	0/0:265:265,0:265:9358:0:0:0,-79.772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chr07	10690654	.	C	T,G	167854	PASS	AB=0.489407,0.50911;ABP=7.61088,6.41289;AC=131,57;AF=0.696809,0.303191;AN=188;AO=5555,2433;CIGAR=1X,1X;DP=8005;DPB=8005;DPRA=20.2671,1.08225;EPP=12065.5,5286.2;EPPR=29.068;GTI=0;LEN=1,1;MEANALT=1.68132,2.03333;MQM=59.9658,45.6864;MQMR=60;NS=94;NUMALT=2;ODDS=0.299615;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=198639,86744;QR=428;RO=12;RPL=5555,2433;RPP=12065.5,5286.2;RPPR=29.068;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12065.5,5286.2;SAR=5555,2433;SRF=0;SRP=29.068;SRR=12;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:28:0,10,18:0:0:10,18:360,636:-80.7959,-51.4178,-48.4075,-29.734,0,-24.3155	1/2:107:0,66,41:0:0:66,41:2376,1468:-312.176,-118.302,-98.434,-194.229,0,-181.887	1/2:187:0,79,108:0:0:79,108:2810,3880:-538.724,-309.722,-285.941,-229.355,0,-196.844	1/2:156:0,70,86:0:0:70,86:2493,3055:-449.527,-246.331,-225.259,-203.55,0,-177.661	1/1:58:0,58,0:0:0:58,0:2080,0:-187.456,-17.4597,0,-187.456,-17.4597,-187.456	1/1:63:0,63,0:0:0:63,0:2235,0:-201.412,-18.9649,0,-201.412,-18.9649,-201.412	1/1:129:0,129,0:0:0:129,0:4613,0:-415.331,-38.8329,0,-415.331,-38.8329,-415.331	1/2:110:1,33,76:1:36:33,76:1184,2731:-308.364,-212.086,-205.09,-93.6371,0,-73.6963	1/1:104:0,104,0:0:0:104,0:3721,0:-335.09,-31.3071,0,-335.09,-31.3071,-335.09	1/2:88:0,63,25:0:0:63,25:2240,888:-254.595,-72.0528,-53.0879,-182.895,0,-175.369	1/1:60:0,60,0:0:0:60,0:2144,0:-193.228,-18.0618,0,-193.228,-18.0618,-193.228	1/1:89:0,89,0:0:0:89,0:3169,0:-285.434,-26.7917,0,-285.434,-26.7917,-285.434	1/2:84:0,46,38:0:0:46,38:1648,1352:-243.297,-108.89,-95.0429,-134.761,0,-123.322	1/2:66:0,37,29:0:0:37,29:1328,1018:-190.029,-81.6964,-70.5583,-108.684,0,-99.9543	1/2:60:0,27,33:0:0:27,33:968,1171:-173.326,-94.371,-86.2432,-79.3096,0,-69.3756	1/1:53:0,53,0:0:0:53,0:1904,0:-171.638,-15.9546,0,-171.638,-15.9546,-171.638	1/1:88:4,84,0:4:144:84,0:3010,0:-257.803,-13.177,0,-259.008,-25.2865,-270.757	1/1:75:0,75,0:0:0:75,0:2700,0:-243.243,-22.5773,0,-243.243,-22.5773,-243.243	1/2:58:0,31,27:0:0:31,27:1101,972:-167.227,-77.5134,-68.1815,-90.0664,0,-81.9386	1/2:158:0,58,100:0:0:58,100:2061,3568:-455.66,-287.714,-270.255,-168.3,0,-138.197	1/1:204:1,203,0:1:36:203,0:7275,0:-651.203,-57.8118,0,-651.504,-61.1091,-654.441	1/2:68:0,17,51:0:0:17,51:608,1824:-196.539,-146.961,-141.843,-49.9345,0,-34.582	1/1:58:0,57,1:0:0:57,1:2037,36:-183.243,-17.1587,0,-180.334,-13.8929,-180.033	1/2:77:0,40,37:0:0:40,37:1428,1315:-222.745,-106.363,-94.3218,-116.736,0,-105.598	1/2:93:0,46,47:0:0:46,47:1656,1684:-269.831,-134.706,-120.858,-135.481,0,-121.333	1/2:279:0,148,131:0:0:148,131:5282,4658:-804.427,-373.848,-329.295,-430.933,0,-391.498	1/1:209:3,206,0:3:108:206,0:7385,0:-654.619,-52.8401,0,-655.522,-62.0122,-664.334	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7925,-9.0309,0,-96.7925,-9.0309,-96.7925	1/2:189:0,87,102:0:0:87,102:3095,3640:-542.62,-290.394,-264.204,-252.579,0,-221.874	1/1:67:0,67,0:0:0:67,0:2397,0:-215.977,-20.169,0,-215.977,-20.169,-215.977	1/1:110:0,101,9:0:0:101,9:3598,316:-323.675,-30.404,0,-298.179,-4.55847,-295.469	1/2:18:0,3,15:0:0:3,15:108,536:-52.2452,-43.4317,-42.5286,-9.17208,0,-4.65663	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	2/2:5:0,0,5:0:0:0,5:0,176:-15.983,-15.983,-15.983,-1.50515,-1.50515,0	1/2:4:0,1,3:0:0:1,3:36,108:-11.9714,-9.03275,-8.73172,-3.29724,0,-2.39415	1/2:203:0,121,82:0:0:121,82:4325,2930:-588.47,-235.824,-199.4,-353,0,-328.316	1/2:82:0,32,50:0:0:32,50:1148,1772:-237.028,-143.387,-133.754,-93.9969,0,-78.9454	1/2:75:0,46,29:0:0:46,29:1648,1032:-216.706,-82.2968,-68.4495,-134.761,0,-126.031	2/2:1:0,0,1:0:0:0,1:0,36:-3.56681,-3.56681,-3.56681,-0.30103,-0.30103,0	1/2:72:0,36,36:0:0:36,36:1273,1292:-207.609,-103.936,-93.0991,-104.026,0,-93.1886	1/2:43:0,24,19:0:0:24,19:864,680:-125.786,-55.2853,-48.0606,-70.8578,0,-65.1383	1/2:99:0,36,63:0:0:36,63:1292,2236:-285.107,-179.716,-168.879,-105.747,0,-86.7818	1/2:98:0,53,45:0:0:53,45:1901,1607:-285.167,-130.109,-114.155,-155.413,0,-141.867	1/2:67:0,43,24:0:0:43,24:1536,860:-193.995,-68.7586,-55.8143,-125.589,0,-118.364	1/1:86:0,85,1:0:0:85,1:3012,36:-270.955,-25.5876,0,-268.053,-22.33,-267.752	1/1:57:0,57,0:0:0:57,0:2048,0:-184.592,-17.1587,0,-184.592,-17.1587,-184.592	1/2:156:0,97,59:0:0:97,59:3480,2100:-452.685,-168.828,-139.628,-284.211,0,-266.45	1/1:83:0,83,0:0:0:83,0:2961,0:-266.722,-24.9855,0,-266.722,-24.9855,-266.722	1/2:128:0,65,62:0:0:65,62:2332,2212:-365.672,-175.455,-155.888,-190.214,0,-171.55	1/2:96:0,47,49:0:0:47,49:1690,1736:-277.432,-139.548,-125.4,-138.239,0,-123.488	1/2:9:0,3,6:0:0:3,6:108,216:-26.6246,-17.8113,-16.9082,-9.17208,0,-7.3659	1/2:84:0,45,38:0:0:45,38:1601,1368:-239.902,-109.425,-95.8782,-130.477,0,-119.038	1/1:21:0,21,0:0:0:21,0:748,0:-67.6453,-6.32163,0,-67.6453,-6.32163,-67.6453	2/2:7:0,0,7:0:0:0,7:0,244:-21.4055,-21.4055,-21.4055,-2.10721,-2.10721,0	1/2:108:0,48,59:0:0:48,59:1702,2112:-307.891,-169.23,-154.78,-138.658,0,-120.897	1/2:51:0,26,25:0:0:26,25:924,896:-146.932,-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chr07	10690665	.	CGGCT	GGGCT	37483.3	PASS	AB=0.499136;ABP=3.04033;AC=57;AF=0.303191;AN=188;AO=2339;CIGAR=1X4M;DP=7920;DPB=7922.2;DPRA=1.06001;EPP=5082.08;EPPR=11904.9;GTI=1;LEN=1;MEANALT=1.76667;MQM=45.7696;MQMR=59.983;NS=94;NUMALT=1;ODDS=0.440851;PAIRED=0;PAIREDR=0;PAO=4.5;PQA=122;PQR=0;PRO=0;QA=82850;QR=193518;RO=5481;RPL=2339;RPP=5082.08;RPPR=11904.9;RPR=0;RUN=1;SAF=0;SAP=5082.08;SAR=2339;SRF=0;SRP=11904.9;SRR=5481;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:10,16:10:359:16:572:-43.2916,0,-24.8268	0/1:107:66,41:66:2337:41:1452:-97.0828,0,-178.381	0/1:180:75,102:75:2644:102:3616:-266.408,0,-184.567	0/1:150:69,81:69:2442:81:2874:-210.965,0,-174.881	0/0:57:55,0:55:1937:0:0:0,-16.5566,-174.235	0/0:63:63,0:63:2224:0:0:0,-18.9649,-200.425	0/0:129:129,0:129:4547:0:0:0,-38.8329,-409.405	0/1:108:32,75:32:1122:75:2607:-197.633,0,-68.7562	0/0:104:103,0:103:3650:0:0:0,-31.0061,-328.347	0/1:87:62,25:62:2180:25:888:-53.3889,0,-170.276	0/0:58:58,0:58:2038:0:0:0,-17.4597,-183.691	0/0:89:88,0:88:3102:0:0:0,-26.4906,-279.05	0/1:79:45,32:45:1606:32:1140:-77.9627,0,-121.242	0/1:63:37,26:37:1305:26:916:-62.5568,0,-98.785	0/1:60:28,29:28:994:29:1018:-73.3788,0,-72.2877	0/0:53:52,0:52:1845:0:0:0,-15.6536,-165.971	0/0:89:87,0:87:3066:0:0:0,-26.1896,-275.807	0/0:75:74,0:74:2639:0:0:0,-22.2762,-237.397	0/1:58:30,27:30:1055:27:956:-67.5006,0,-77.7476	0/1:156:57,98:57:2020:98:3453:-260.668,0,-135.055	0/0:204:203,0:203:7173:0:0:0,-61.1091,-645.316	0/1:71:16,54:16:572:54:1921:-149.7,0,-30.3893	0/0:58:57,1:57:2010:1:36:0,-13.8929,-177.605	0/1:76:36,39:36:1276:39:1392:-101.395,0,-92.206	0/1:94:42,48:42:1476:48:1699:-124.036,0,-105.7	0/1:276:148,124:148:5173:124:4435:-312.324,0,-383.488	0/0:209:208,0:208:7343:0:0:0,-62.6142,-660.568	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9817	0/1:179:85,94:85:3002:94:3322:-241.081,0,-216.53	0/0:68:66,0:66:2357:0:0:0,-19.868,-212.027	0/0:112:102,10:102:3588:10:356:0,-1.60346,-291.019	0/1:17:3,13:3:108:13:464:-36.476,0,-4.90259	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0183	0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891	1/1:5:0,5:0:0:5:176:-15.983,-1.50515,0	0/1:4:1,3:1:32:3:108:-8.73172,0,-1.99519	0/1:199:118,74:118:4205:74:2645:-177.291,0,-320.471	0/1:80:32,48:32:1107:48:1692:-127.24,0,-75.8519	0/1:74:46,27:46:1613:27:964:-63.0746,0,-123.146	1/1:1:0,1:0:0:1:36:-3.56681,-0.30103,0	0/1:69:35,34:35:1241:34:1198:-85.9878,0,-91.2239	0/1:42:24,18:24:860:18:640:-44.807,0,-65.0787	0/1:98:36,62:36:1268:62:2216:-167.396,0,-84.9212	0/1:98:52,44:52:1847:44:1576:-111.661,0,-137.254	0/1:67:40,23:40:1391:23:811:-52.8836,0,-106.165	0/0:86:83,1:83:2922:1:36:0,-22.0784,-259.669	0/0:57:57,0:57:1987:0:0:0,-17.1587,-179.102	0/1:151:92,57:92:3256:57:2026:-135.284,0,-248.021	0/0:85:85,0:85:3000:0:0:0,-25.5875,-270.234	0/1:125:63,61:63:2228:61:2148:-153.26,0,-163.096	0/1:100:47,53:47:1667:53:1858:-134.647,0,-120.214	0/1:9:3,6:3:108:6:216:-16.9082,0,-7.3659	0/1:81:43,34:43:1518:34:1208:-83.8273,0,-113.398	0/0:21:21,0:21:738:0:0:0,-6.32163,-66.7416	1/1:7:0,6:0:0:6:206:-18.1105,-1.80618,0	0/1:108:48,60:48:1709:60:2128:-156.577,0,-121.585	0/1:49:25,24:25:876:24:856:-61.704,0,-64.4047	0/1:6:2,4:2:72:4:144:-11.3607,0,-5.03054	0/0:10:9,0:9:315:0:0:0,-2.70927,-28.3287	0/0:81:81,0:81:2854:0:0:0,-24.3834,-257.099	0/0:116:114,0:114:4042:0:0:0,-34.3174,-363.611	0/1:11:2,8:2:72:8:280:-21.9777,0,-3.46869	0/0:93:93,0:93:3295:0:0:0,-27.9958,-296.771	0/0:159:156,3:156:5505:3:108:0,-37.8767,-485.596	0/1:66:28,36:28:978:36:1282:-94.8296,0,-68.7083	0/0:99:98,0:98:3449:0:0:0,-29.5009,-310.267	0/1:116:54,61:54:1901:61:2154:-156.413,0,-136.458	0/1:111:18,92:18:630:92:3250:-255.348,0,-23.5756	0/0:29:28,1:28:997:1:36:0,-5.16306,-86.4776	0/0:83:81,0:81:2834:0:0:0,-24.3834,-254.941	0/1:92:61,28:61:2168:28:984:-60.661,0,-168.236	0/1:13:5,7:5:175:7:244:-18.1617,0,-12.1226	0/0:119:119,0:119:4201:0:0:0,-35.8226,-378.267	0/1:61:23,37:23:814:37:1324:-99.4364,0,-55.1678	0/0:174:174,0:174:6125:0:0:0,-52.3792,-551.362	0/0:100:100,0:100:3530:0:0:0,-30.103,-317.911	0/1:151:85,66:85:3004:66:2329:-161.557,0,-225.138	0/0:76:74,1:74:2578:1:36:0,-19.3861,-228.72	0/0:7:7,0:7:251:0:0:0,-2.10721,-22.9379	0/0:73:72,0:72:2548:0:0:0,-21.6742,-229.359	0/1:105:46,56:46:1630:56:1964:-142.999,0,-115.932	0/1:181:90,89:90:3178:89:3143:-226.206,0,-232.002	0/1:83:47,35:47:1665:35:1252:-86.9026,0,-125.093	0/1:73:33,37:33:1152:37:1320:-96.688,0,-82.5712	0/1:74:33,40:33:1186:40:1436:-105.775,0,-84.6472	0/1:147:87,59:87:3085:59:2096:-142.696,0,-233.57	0/0:52:52,0:52:1840:0:0:0,-15.6536,-165.88	0/0:78:73,0:73:2560:0:0:0,-21.9752,-230.334	0/0:76:76,0:76:2692:0:0:0,-22.8783,-242.526	0/1:37:21,15:21:755:15:518:-34.6368,0,-57.0802	0/1:80:45,35:45:1597:35:1240:-86.4107,0,-119.937	0/1:80:27,53:27:959:53:1849:-140.494,0,-62.5433	0/0:53:51,0:51:1809:0:0:0,-15.3525,-162.73	0/0:143:138,0:138:4860:0:0:0,-41.5421,-437.199
chr07	10746191	.	T	C	55624	PASS	AB=0.577103;ABP=268.214;AC=152;AF=0.817204;AN=186;AO=6250;CIGAR=1X;DP=8429;DPB=8429;DPRA=0;EPP=13548.7;EPPR=4699.94;GTI=8;LEN=1;MEANALT=1.03226;MQM=23.0357;MQMR=30.954;NS=93;NUMALT=1;ODDS=0.595013;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223515;QR=77446;RO=2175;RPL=6250;RPP=13574.7;RPPR=4725.96;RPR=0;RUN=1;SAF=3;SAP=13548.7;SAR=6247;SRF=2172;SRP=4699.94;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1256:-71.985,-10.5361,0	0/1:170:82,88:82:2936:88:3148:-128.335,0,-160.879	1/1:124:0,124:0:0:124:4437:-255.475,-37.3277,0	1/1:94:0,94:0:0:94:3372:-193.103,-28.2968,0	1/1:78:0,78:0:0:78:2777:-159.83,-23.4803,0	1/1:16:0,16:0:0:16:568:-32.6539,-4.81648,0	0/1:127:61,66:61:2176:66:2376:-97.3617,0,-128.106	1/1:96:0,96:0:0:96:3436:-197.242,-28.8989,0	1/1:54:0,54:0:0:54:1925:-110.687,-16.2556,0	1/1:43:0,43:0:0:43:1540:-88.3656,-12.9443,0	1/1:51:0,51:0:0:51:1824:-104.825,-15.3525,0	1/1:83:0,83:0:0:83:2976:-170.634,-24.9855,0	0/1:89:32,57:32:1139:57:2033:-88.1232,0,-56.0788	1/1:49:0,49:0:0:49:1739:-100.506,-14.7505,0	0/1:108:37,71:37:1319:71:2544:-113.59,0,-69.431	1/1:37:0,37:0:0:37:1319:-76.0606,-11.1381,0	1/1:68:0,68:0:0:68:2436:-138.713,-20.47,0	0/1:49:18,31:18:644:31:1103:-48.9188,0,-32.4604	0/1:76:25,51:25:896:51:1814:-82.126,0,-42.3092	0/1:239:77,162:77:2747:162:5816:-260.511,0,-139.035	0/1:180:67,113:67:2366:113:4044:-177.811,0,-119.283	0/1:123:74,49:74:2619:49:1745:-63.491,0,-164.962	1/1:35:1,34:1:36:34:1209:-66.64,-7.48151,0	1/1:76:1,75:1:36:75:2677:-149.711,-19.9755,0	1/1:73:0,73:0:0:73:2616:-149.868,-21.9752,0	0/1:326:198,128:198:7057:128:4568:-164.425,0,-441.874	0/1:266:109,157:109:3908:157:5579:-240.914,0,-202.386	1/1:39:0,39:0:0:39:1396:-80.1617,-11.7402,0	1/1:307:0,307:0:0:307:11004:-629.638,-92.4162,0	1/1:33:0,33:0:0:33:1180:-67.8558,-9.93399,0	1/1:33:0,33:0:0:33:1169:-67.5308,-9.93399,0	1/1:3:0,3:0:0:3:108:-7.61133,-0.90309,0	1/1:9:0,9:0:0:9:324:-18.6867,-2.70927,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:248:-14.6438,-2.10721,0	1/1:7:0,7:0:0:7:248:-14.5572,-2.10721,0	0/1:329:116,213:116:4127:213:7636:-336.938,0,-214.546	0/1:176:90,86:90:3228:86:3076:-125.095,0,-182.065	0/1:102:40,62:40:1414:62:2187:-96.1979,0,-72.5887	1/1:4:0,4:0:0:4:144:-8.4318,-1.20412,0	0/1:155:83,72:83:2963:72:2572:-101.103,0,-169.087	1/1:35:0,35:0:0:35:1252:-71.9578,-10.5361,0	1/1:93:0,93:0:0:93:3317:-190.68,-27.9958,0	1/1:87:0,87:0:0:87:3124:-178.694,-26.1896,0	1/1:61:0,61:0:0:61:2188:-125.369,-18.3628,0	1/1:45:0,45:0:0:45:1612:-92.553,-13.5464,0	1/1:78:0,78:0:0:78:2796:-160.123,-23.4803,0	0/1:228:79,149:79:2779:149:5314:-236.351,0,-142.97	0/1:120:65,55:65:2317:55:1956:-76.7452,0,-142.163	0/1:146:63,82:63:2251:82:2936:-124.401,0,-128.182	1/1:98:1,97:1:36:97:3480:-196.533,-26.9422,0	1/1:3:0,3:0:0:3:104:-6.35271,-0.90309,0	1/1:100:0,100:0:0:100:3588:-205.323,-30.103,0	1/1:6:0,6:0:0:6:212:-12.5062,-1.80618,0	1/1:4:0,4:0:0:4:144:-8.4318,-1.20412,0	1/1:76:0,76:0:0:76:2728:-156.389,-22.8783,0	1/1:22:0,21:0:0:21:752:-43.0433,-6.32163,0	1/1:4:0,4:0:0:4:144:-8.4318,-1.20412,0	0/1:14:7,7:7:252:7:252:-10.3703,0,-15.0571	1/1:15:0,15:0:0:15:540:-30.9926,-4.51545,0	1/1:71:0,71:0:0:71:2525:-145.473,-21.3731,0	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	1/1:101:0,101:0:0:101:3620:-207.354,-30.404,0	1/1:77:0,77:0:0:77:2760:-158.157,-23.1793,0	1/1:54:0,54:0:0:54:1921:-110.575,-16.2556,0	1/1:68:0,68:0:0:68:2417:-139.234,-20.47,0	1/1:85:1,84:1:36:84:3008:-170.583,-23.5982,0	1/1:57:1,56:1:36:56:2008:-112.059,-14.1042,0	1/1:22:0,22:0:0:22:788:-45.4078,-6.62266,0	1/1:74:0,74:0:0:74:2652:-152.004,-22.2762,0	1/1:86:0,86:0:0:86:3092:-176.67,-25.8886,0	1/1:7:0,7:0:0:7:252:-14.5847,-2.10721,0	0/1:113:46,67:46:1652:67:2396:-103.518,0,-85.8839	0/1:87:32,55:32:1148:55:1953:-86.4943,0,-57.0034	0/1:167:105,62:105:3750:62:2197:-77.4539,0,-221.776	0/1:269:127,142:127:4519:142:5072:-210.304,0,-260.898	0/1:128:49,79:49:1721:79:2836:-123.669,0,-87.6604	0/1:131:59,72:59:2076:72:2565:-108.03,0,-113.053	1/1:4:0,4:0:0:4:144:-8.4318,-1.20412,0	0/1:153:50,101:50:1792:101:3608:-161.503,0,-84.2624	0/1:134:52,82:52:1864:82:2925:-127.637,0,-95.5808	0/1:209:40,169:40:1415:169:6056:-284.079,0,-46.091	0/1:141:57,84:57:2016:84:3012:-130.239,0,-111.563	0/1:78:30,48:30:1080:48:1728:-75.2799,0,-57.9977	1/1:72:0,72:0:0:72:2576:-147.869,-21.6742,0	0/1:194:62,132:62:2197:132:4709:-211.23,0,-109.953	0/1:60:19,41:19:672:41:1476:-66.2562,0,-31.5533	1/1:61:0,61:0:0:61:2188:-125.283,-18.3628,0	1/1:86:0,86:0:0:86:3074:-177.55,-25.8886,0	1/1:22:0,22:0:0:22:792:-46.542,-6.62266,0	0/1:128:63,65:63:2222:65:2328:-95.2696,0,-124.215	0/1:121:55,66:55:1968:66:2356:-99.19,0,-113.465	1/1:53:1,52:1:36:52:1864:-104.092,-13.0518,0	1/1:111:0,111:0:0:111:3973:-228.839,-33.4143,0
chr07	10746199	.	T	G	55716.1	PASS	AB=0.578538;ABP=278.608;AC=152;AF=0.817204;AN=186;AO=6271;CIGAR=1X;DP=8444;DPB=8444;DPRA=0;EPP=13620.3;EPPR=4710.76;GTI=8;LEN=1;MEANALT=1.05376;MQM=23.0199;MQMR=30.9548;NS=93;NUMALT=1;ODDS=0.882538;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224704;QR=77110;RO=2168;RPL=6271;RPP=13620.3;RPPR=4710.76;RPR=0;RUN=1;SAF=0;SAP=13620.3;SAR=6271;SRF=2168;SRP=4710.76;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1248:-71.9306,-10.5361,0	0/1:172:83,89:83:2949:89:3192:-129.753,0,-161.968	1/1:122:0,122:0:0:122:4368:-251.472,-36.7257,0	1/1:95:0,95:0:0:95:3408:-194.989,-28.5979,0	1/1:76:0,76:0:0:76:2704:-155.885,-22.8783,0	1/1:16:0,16:0:0:16:572:-32.6652,-4.81648,0	0/1:130:62,68:62:2228:68:2428:-100.425,0,-130.613	1/1:95:0,95:0:0:95:3408:-194.989,-28.5979,0	1/1:54:0,54:0:0:54:1920:-110.818,-16.2556,0	1/1:44:0,44:0:0:44:1576:-90.4166,-13.2453,0	1/1:51:0,51:0:0:51:1824:-104.746,-15.3525,0	1/1:83:0,83:0:0:83:2972:-170.351,-24.9855,0	0/1:84:31,53:31:1090:53:1892:-81.4059,0,-54.2713	1/1:50:0,50:0:0:50:1800:-102.777,-15.0515,0	0/1:105:37,68:37:1324:68:2428:-107.951,0,-70.6738	1/1:36:0,36:0:0:36:1288:-74.0087,-10.8371,0	1/1:69:0,69:0:0:69:2480:-140.654,-20.7711,0	0/1:50:19,31:19:676:31:1112:-48.7295,0,-34.6678	0/1:74:25,49:25:896:49:1756:-78.3953,0,-42.9112	0/1:244:76,168:76:2720:168:6004:-271.043,0,-134.898	0/1:178:66,112:66:2361:112:3988:-176.056,0,-117.589	0/1:121:74,47:74:2652:47:1688:-60.1721,0,-167.277	1/1:34:1,33:1:36:33:1188:-64.8557,-7.18048,0	1/1:77:1,76:1:36:76:2728:-152.082,-20.2765,0	1/1:73:0,73:0:0:73:2616:-149.868,-21.9752,0	0/1:323:192,131:192:6818:131:4700:-171.565,0,-425.449	0/1:274:109,164:109:3856:164:5876:-254.44,0,-198.905	1/1:40:0,40:0:0:40:1428:-82.1855,-12.0412,0	1/1:311:0,311:0:0:311:11156:-637.811,-93.6203,0	1/1:33:0,33:0:0:33:1188:-67.9102,-9.93399,0	1/1:34:0,34:0:0:34:1220:-69.934,-10.235,0	1/1:3:0,3:0:0:3:108:-7.61133,-0.90309,0	1/1:9:0,9:0:0:9:324:-18.6867,-2.70927,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-14.5847,-2.10721,0	1/1:7:0,7:0:0:7:248:-14.5572,-2.10721,0	0/1:331:117,214:117:4150:214:7700:-338.407,0,-215.593	0/1:183:93,90:93:3305:90:3232:-130.861,0,-185.992	0/1:101:39,61:39:1384:61:2192:-94.9721,0,-70.7435	1/1:4:0,4:0:0:4:144:-8.4318,-1.20412,0	0/1:159:86,73:86:3072:73:2624:-102.058,0,-175.625	1/1:37:0,37:0:0:37:1328:-76.0869,-11.1381,0	1/1:93:0,93:0:0:93:3320:-190.779,-27.9958,0	1/1:87:0,87:0:0:87:3116:-178.554,-26.1896,0	1/1:61:0,61:0:0:61:2184:-125.256,-18.3628,0	1/1:47:0,47:0:0:47:1688:-96.5967,-14.1484,0	1/1:78:0,78:0:0:78:2796:-160.123,-23.4803,0	0/1:224:74,150:74:2623:150:5380:-240.308,0,-131.86	0/1:122:66,56:66:2332:56:2000:-78.2484,0,-143.231	0/1:146:64,82:64:2291:82:2944:-124.403,0,-131.636	1/1:99:0,99:0:0:99:3528:-203.283,-29.802,0	1/1:3:0,3:0:0:3:104:-6.35271,-0.90309,0	1/1:99:0,99:0:0:99:3556:-203.221,-29.802,0	1/1:7:0,7:0:0:7:252:-14.5847,-2.10721,0	1/1:4:0,4:0:0:4:144:-8.4318,-1.20412,0	1/1:72:0,72:0:0:72:2588:-147.871,-21.6742,0	1/1:23:0,23:0:0:23:812:-47.2915,-6.92369,0	1/1:4:0,4:0:0:4:140:-8.40394,-1.20412,0	0/1:15:8,7:8:288:7:244:-10.0142,0,-17.5057	1/1:16:0,16:0:0:16:576:-33.0435,-4.81648,0	1/1:71:0,71:0:0:71:2544:-145.766,-21.3731,0	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	1/1:102:0,102:0:0:102:3664:-209.373,-30.7051,0	1/1:77:0,77:0:0:77:2764:-158.099,-23.1793,0	1/1:55:0,55:0:0:55:1980:-113.032,-16.5567,0	1/1:68:0,68:0:0:68:2440:-139.64,-20.47,0	1/1:85:1,84:1:36:84:3004:-170.385,-23.5982,0	1/1:56:1,55:1:36:55:1980:-109.977,-13.8031,0	1/1:21:0,21:0:0:21:756:-43.2984,-6.32163,0	1/1:74:0,74:0:0:74:2648:-151.892,-22.2762,0	1/1:86:0,86:0:0:86:3092:-176.585,-25.8886,0	1/1:7:0,7:0:0:7:252:-14.5847,-2.10721,0	0/1:115:47,68:47:1676:68:2436:-104.995,0,-87.583	0/1:86:32,54:32:1130:54:1936:-85.0378,0,-56.8496	0/1:173:109,63:109:3877:63:2240:-77.2763,0,-229.792	0/1:267:125,141:125:4433:141:5036:-208.876,0,-256.527	0/1:128:47,80:47:1680:80:2864:-125.731,0,-83.7588	0/1:132:58,74:58:2080:74:2652:-112.183,0,-111.684	1/1:4:0,4:0:0:4:144:-8.4318,-1.20412,0	0/1:153:50,103:50:1778:103:3704:-165.394,0,-83.54	0/1:133:51,82:51:1787:82:2944:-128.317,0,-91.5529	0/1:206:40,166:40:1440:166:5952:-278.515,0,-47.8457	0/1:142:57,85:57:2023:85:3060:-131.466,0,-111.96	0/1:77:29,48:29:1040:48:1724:-75.4684,0,-55.4091	1/1:71:0,71:0:0:71:2528:-145.657,-21.3731,0	0/1:190:60,130:60:2130:130:4660:-208.371,0,-106.012	0/1:61:19,42:19:671:42:1508:-67.979,0,-31.1176	1/1:63:0,63:0:0:63:2264:-129.412,-18.9649,0	1/1:87:0,87:0:0:87:3112:-179.715,-26.1896,0	1/1:22:0,22:0:0:22:788:-46.1816,-6.62266,0	0/1:127:64,63:64:2259:63:2252:-91.1001,0,-126.637	0/1:118:54,64:54:1911:64:2292:-95.8875,0,-110.904	1/1:53:1,52:1:36:52:1848:-103.813,-13.0518,0	1/1:109:0,109:0:0:109:3920:-224.945,-32.8123,0
chr07	10914757	.	G	A	74696.2	PASS	AB=0.501554;ABP=3.15202;AC=51;AF=0.271277;AN=188;AO=3398;CIGAR=1X;DP=11485;DPB=11485;DPRA=1.2285;EPP=7372.99;EPPR=17539.8;GTI=2;LEN=1;MEANALT=1.03448;MQM=45.1077;MQMR=56.6552;NS=94;NUMALT=1;ODDS=0.23277;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121141;QR=286492;RO=8080;RPL=1756;RPP=11.3153;RPPR=40.6015;RPR=1642;RUN=1;SAF=1757;SAP=11.6093;SAR=1641;SRF=4226;SRP=40.2005;SRR=3854;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:101:57,44:57:1991:44:1584:-106.533,0,-147.762	0/1:118:65,53:65:2316:53:1881:-130.926,0,-172.662	0/1:199:95,104:95:3379:104:3735:-262.964,0,-243.813	0/1:163:69,94:69:2460:94:3372:-247.929,0,-171.473	0/0:75:75,0:75:2639:0:0:0,-22.5772,-237.496	0/0:49:49,0:49:1726:0:0:0,-14.7505,-155.098	0/0:143:143,0:143:5079:0:0:0,-43.0473,-456.734	0/1:191:92,99:92:3231:99:3517:-246.989,0,-232.399	0/0:202:201,0:201:7139:0:0:0,-60.507,-640.894	0/1:105:54,51:54:1924:51:1824:-130.328,0,-141.674	0/0:141:141,0:141:5005:0:0:0,-42.4452,-450.051	0/0:187:187,0:187:6597:0:0:0,-56.2926,-592.121	0/1:153:87,66:87:3108:66:2341:-155.988,0,-232.835	0/1:185:100,85:100:3551:85:3017:-208.444,0,-263.479	0/1:140:78,62:78:2731:62:2211:-152.473,0,-203.61	0/0:130:130,0:130:4643:0:0:0,-39.1339,-417.085	0/0:136:136,0:136:4816:0:0:0,-40.9401,-433.393	0/0:116:115,1:115:4046:1:36:0,-32.8329,-361.961	0/1:79:34,45:34:1204:45:1584:-113.642,0,-84.8086	0/1:134:71,63:71:2511:63:2251:-159.013,0,-185.641	0/0:216:216,0:216:7679:0:0:0,-65.0225,-688.467	0/1:74:23,51:23:811:51:1832:-139.652,0,-51.0047	0/0:127:127,0:127:4529:0:0:0,-38.2308,-406.563	0/1:132:76,56:76:2707:56:1997:-136.432,0,-203.859	0/1:115:59,56:59:2091:56:1977:-139.751,0,-153.367	0/1:252:139,113:139:4954:113:4056:-283.508,0,-369.573	0/0:215:214,0:214:7629:0:0:0,-64.4204,-685.167	0/0:71:71,0:71:2513:0:0:0,-21.3731,-226.021	0/1:153:71,82:71:2539:82:2939:-211.386,0,-182.434	0/0:111:109,2:109:3880:2:72:0,-26.7254,-342.316	0/0:130:128,2:128:4501:2:72:0,-32.3889,-397.877	0/1:5:1,4:1:32:4:144:-11.3986,0,-1.69212	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.1886	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.057	0/1:4:2,2:2:72:2:72:-5.61541,0,-5.58633	0/1:20:11,9:11:392:9:316:-20.6787,0,-29.5501	0/1:390:218,172:218:7688:172:6116:-422.085,0,-573.781	0/1:100:47,53:47:1660:53:1881:-135.503,0,-119.481	0/1:94:61,33:61:2163:33:1184:-74.2385,0,-165.694	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.66699	0/1:144:71,73:71:2502:73:2591:-182.986,0,-181.746	0/1:70:37,33:37:1328:33:1182:-82.5956,0,-98.5376	0/1:168:78,90:78:2753:90:3214:-232.409,0,-197.146	0/1:158:78,80:78:2742:80:2821:-202.602,0,-199.268	0/1:102:55,47:55:1905:47:1661:-115.798,0,-140.636	0/0:81:81,0:81:2893:0:0:0,-24.3834,-258.758	0/0:97:96,1:96:3404:1:36:0,-25.6107,-302.118	0/1:160:68,92:68:2410:92:3260:-239.677,0,-168.533	0/0:88:88,0:88:3118:0:0:0,-26.4906,-280.372	0/1:156:81,75:81:2908:75:2662:-187.084,0,-214.554	0/1:139:77,62:77:2727:62:2232:-156.479,0,-203.644	0/1:8:2,6:2:72:6:216:-16.3013,0,-4.42848	0/1:129:59,70:59:2112:70:2504:-176.388,0,-150.908	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.395	0/1:3:2,1:2:72:1:36:-2.48451,0,-5.93363	0/1:145:67,76:67:2361:76:2696:-193.025,0,-169.147	0/1:53:38,15:38:1306:15:525:-30.4425,0,-100.585	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.1892	0/0:66:66,0:66:2355:0:0:0,-19.868,-211.63	0/0:175:175,0:175:6207:0:0:0,-52.6802,-557.936	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5357	0/0:144:144,0:144:5118:0:0:0,-43.3483,-460.312	0/0:196:195,1:195:6962:1:36:0,-55.4188,-622.452	0/1:88:41,47:41:1452:47:1688:-123.039,0,-104.171	0/0:87:87,0:87:3056:0:0:0,-26.1896,-274.979	0/1:233:122,111:122:4256:111:3944:-277.358,0,-311.722	0/1:88:22,66:22:784:66:2345:-179.71,0,-44.2855	0/0:78:78,0:78:2743:0:0:0,-23.4803,-246.521	0/0:90:90,0:90:3215:0:0:0,-27.0927,-289.028	0/1:148:74,74:74:2607:74:2647:-188.799,0,-190.152	0/1:30:22,8:22:788:8:288:-16.5426,0,-62.1576	0/0:87:87,0:87:3077:0:0:0,-26.1896,-276.683	0/1:142:70,72:70:2482:72:2574:-179.928,0,-179.707	0/0:293:292,0:292:10403:0:0:0,-87.9008,-933.371	0/0:132:132,0:132:4657:0:0:0,-39.736,-418.723	0/1:170:64,106:64:2292:106:3776:-278.718,0,-155.017	0/0:124:123,1:123:4346:1:36:0,-33.7385,-386.477	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.6858	0/0:99:97,1:97:3456:1:36:0,-26.3221,-307.429	0/1:94:49,45:49:1743:45:1604:-111.218,0,-128.186	0/1:265:137,128:137:4899:128:4585:-319.315,0,-360.915	0/1:166:90,76:90:3195:76:2697:-187.919,0,-237.162	0/1:158:79,79:79:2779:79:2820:-199.829,0,-202.625	0/1:164:74,90:74:2632:90:3224:-236.53,0,-187.667	0/1:256:120,136:120:4242:136:4850:-351.306,0,-304.264	0/0:62:62,0:62:2199:0:0:0,-18.6639,-197.994	0/0:155:155,0:155:5491:0:0:0,-46.6596,-493.462	0/0:151:150,0:150:5342:0:0:0,-45.1545,-479.296	0/1:99:61,38:61:2167:38:1368:-90.5985,0,-164.849	0/1:148:64,84:64:2283:84:2980:-216.705,0,-160.974	0/1:166:54,112:54:1905:112:3996:-301.26,0,-121.643	0/0:131:131,0:131:4632:0:0:0,-39.4349,-416.018	0/0:221:221,0:221:7852:0:0:0,-66.5276,-705.996
chr07	11910523	.	G	A	12867.5	PASS	AB=0.366851;ABP=364.421;AC=51;AF=0.271277;AN=188;AO=863;CIGAR=1X;DP=4658;DPB=4658;DPRA=0.90552;EPP=1707.3;EPPR=7470.12;GTI=5;LEN=1;MEANALT=1.01887;MQM=60;MQMR=59.9931;NS=94;NUMALT=1;ODDS=1.37684;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30884;QR=135692;RO=3794;RPL=843;RPP=1707.3;RPPR=7470.12;RPR=20;RUN=1;SAF=0;SAP=1876.99;SAR=863;SRF=0;SRP=8241.58;SRR=3794;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:20,8:20:707:8:288:-17.8386,0,-55.5257	0/1:39:29,10:29:1036:10:341:-19.2776,0,-81.8137	0/1:84:58,26:58:2084:26:932:-58.9123,0,-162.544	0/1:61:32,29:32:1137:29:1032:-74.8306,0,-84.2741	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:60:46,14:46:1644:14:504:-27.6363,0,-130.187	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:90:90,0:90:3212:0:0:0,-27.0927,-289.301	0/1:43:23,20:23:828:20:705:-50.8285,0,-61.8998	0/1:64:29,35:29:1044:35:1236:-92.2756,0,-75.0089	0/1:36:20,16:20:716:16:576:-41.3379,0,-53.9306	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/1:31:17,14:17:612:14:489:-35.007,0,-46.0815	0/1:66:47,19:47:1666:19:670:-40.7565,0,-130.358	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/1:38:20,18:20:711:18:640:-46.4902,0,-52.8765	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/1:18:16,2:16:563:2:72:-1.41818,0,-45.5806	0/1:38:26,12:26:921:12:432:-27.7821,0,-71.7614	0/1:83:67,16:67:2408:16:576:-27.1895,0,-191.986	0/0:165:165,0:165:5912:0:0:0,-49.6699,-532.184	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/1:86:60,26:60:2148:26:932:-58.3103,0,-167.699	0/0:83:83,0:83:2943:0:0:0,-24.9855,-265.103	0/0:70:70,0:70:2489:0:0:0,-21.0721,-224.262	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:116:65,51:65:2332:51:1826:-129.701,0,-175.22	0/1:72:45,27:45:1612:27:967:-65.673,0,-123.696	0/1:32:14,18:14:504:18:648:-49.0189,0,-36.0651	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:41:26,15:26:927:15:540:-36.5943,0,-71.4051	0/1:35:22,13:22:788:13:468:-31.9236,0,-60.7087	0/1:46:31,15:31:1112:15:540:-35.0892,0,-86.544	0/1:31:25,6:25:900:6:216:-10.4586,0,-71.9891	0/1:28:14,14:14:500:14:500:-36.9073,0,-36.9073	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:92:91,1:91:3264:1:36:0,-24.0965,-290.382	0/1:84:64,20:64:2277:20:720:-39.8423,0,-179.904	0/0:39:39,0:39:1379:0:0:0,-11.7402,-124.408	0/1:47:32,15:32:1137:15:540:-34.7881,0,-88.4886	0/1:44:26,18:26:928:18:644:-45.0453,0,-70.5929	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:78:52,25:52:1853:25:900:-57.7819,0,-143.509	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	0/1:88:56,32:56:2012:32:1133:-75.7863,0,-154.862	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:73:72,1:72:2588:1:36:0,-18.3769,-229.57	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:31:22,9:22:792:9:324:-20.1739,0,-62.2737	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/1:39:28,11:28:990:11:396:-24.2426,0,-77.6719	0/1:69:44,25:44:1580:25:896:-60.1893,0,-121.72	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6511	0/1:17:10,7:10:351:7:245:-17.2727,0,-26.8092	0/0:166:166,0:166:5951:0:0:0,-49.971,-535.696	0/1:35:26,9:26:932:9:324:-18.9698,0,-73.6628	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:71:50,21:50:1788:21:748:-46.2722,0,-139.829	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/1:56:32,24:32:1133:24:864:-61.2249,0,-85.419	0/1:32:25,7:25:892:7:252:-13.396,0,-70.9667	0/1:42:29,13:29:1027:13:468:-29.8164,0,-80.0989	0/1:33:14,19:14:496:19:684:-51.9563,0,-35.0403	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:76:43,33:43:1522:33:1188:-84.3503,0,-114.393	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.657	0/1:37:16,21:16:576:21:752:-56.8681,0,-41.0369	0/1:155:90,65:90:3228:65:2336:-163.84,0,-244.082	0/1:50:20,30:20:720:30:1080:-82.4618,0,-50.0773	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039
chr07	11980791	.	CA	CG,TG	99188.8	PASS	AB=0.501659,0.495761;ABP=3.07513,3.43371;AC=137,51;AF=0.728723,0.271277;AN=188;AO=3401,1348;CIGAR=1M1X,2X;DP=4761;DPB=4761;DPRA=0,1.13176;EPP=7388.19,2930.16;EPPR=11.6962;GTI=1;LEN=1,2;MEANALT=1.64894,2.13208;MQM=59.9186,59.8769;MQMR=60;NS=94;NUMALT=2;ODDS=1.41401;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=120423,47256;QR=138;RO=4;RPL=0,0;RPP=7388.19,2930.16;RPPR=11.6962;RPR=3401,1348;RUN=1,1;SAF=0,0;SAP=7388.19,2930.16;SAR=3401,1348;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:29:0,15,14:0:0:15,14:536,482:-83.2007,-39.4918,-34.9764,-44.0594,0,-39.8449	1/2:27:0,21,6:0:0:21,6:752,204:-78.2233,-16.8825,-10.5609,-61.6846,0,-59.8784	1/2:71:0,39,32:0:0:39,32:1375,1128:-204.139,-92.1946,-80.4545,-112.296,0,-102.663	1/2:88:0,44,44:0:0:44,44:1527,1533:-249.13,-125.01,-111.765,-124.467,0,-111.222	1/1:39:0,39,0:0:0:39,0:1379,0:-124.408,-11.7402,0,-124.408,-11.7402,-124.408	1/1:31:0,31,0:0:0:31,0:1103,0:-99.5798,-9.33193,0,-99.5798,-9.33193,-99.5798	1/1:45:0,44,1:0:0:44,1:1584,36:-142.492,-13.2453,0,-139.554,-9.94808,-139.253	1/2:66:0,28,38:0:0:28,38:983,1334:-188.919,-108.917,-100.488,-80.3522,0,-68.9131	1/1:52:0,52,0:0:0:52,0:1830,0:-164.96,-15.6536,0,-164.96,-15.6536,-164.96	1/2:31:0,10,21:0:0:10,21:351,756:-90.6082,-62.0456,-59.0353,-28.9164,0,-22.5947	1/1:54:0,54,0:0:0:54,0:1919,0:-172.986,-16.2556,0,-172.986,-16.2556,-172.986	1/1:61:0,61,0:0:0:61,0:2158,0:-194.486,-18.3628,0,-194.486,-18.3628,-194.486	1/2:47:0,29,18:0:0:29,18:1019,634:-134.908,-51.9684,-43.2385,-83.2914,0,-77.8729	1/2:58:0,33,25:0:0:33,25:1149,870:-164.496,-71.0644,-61.1305,-93.7799,0,-86.2542	1/2:35:0,17,18:0:0:17,18:612,632:-101.729,-51.7883,-46.6708,-50.2959,0,-44.8774	1/1:45:0,45,0:0:0:45,0:1590,0:-143.389,-13.5464,0,-143.389,-13.5464,-143.389	1/1:20:0,20,0:0:0:20,0:708,0:-64.0456,-6.0206,0,-64.0456,-6.0206,-64.0456	1/1:22:0,22,0:0:0:22,0:780,0:-70.523,-6.62266,0,-70.523,-6.62266,-70.523	1/2:24:0,14,10:0:0:14,10:472,350:-67.067,-28.8259,-24.6115,-38.5856,0,-35.5753	1/2:94:0,54,40:0:0:54,40:1884,1409:-268.292,-115.064,-98.808,-153.579,0,-141.538	1/1:85:0,85,0:0:0:85,0:3036,0:-273.471,-25.5876,0,-273.471,-25.5876,-273.471	1/2:55:0,19,36:0:0:19,36:675,1278:-159.488,-104.485,-98.7657,-55.3574,0,-44.5203	1/1:71:0,71,0:0:0:71,0:2536,0:-228.473,-21.3731,0,-228.473,-21.3731,-228.473	1/2:36:0,20,16:0:0:20,16:712,564:-104.305,-46.2735,-40.2529,-58.3855,0,-53.569	1/2:49:0,22,26:0:0:22,26:770,893:-135.141,-72.4912,-65.8686,-62.6373,0,-54.8105	1/2:132:0,66,65:0:0:66,65:2359,2276:-377.629,-185.282,-165.414,-192.448,0,-172.881	1/1:82:0,82,0:0:0:82,0:2910,0:-262.136,-24.6845,0,-262.136,-24.6845,-262.136	1/1:18:1,17,0:1:36:17,0:612,0:-51.8152,-1.82027,0,-52.1162,-5.11751,-55.0536	1/2:98:0,46,51:0:0:46,51:1610,1790:-276.762,-145.773,-131.926,-131.086,0,-115.733	1/1:70:1,66,2:1:36:66,2:2357,61:-208.646,-16.9123,0,-204.062,-14.9817,-206.398	1/1:65:0,65,0:0:0:65,0:2322,0:-209.149,-19.567,0,-209.149,-19.567,-209.149	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/1:7:0,7,0:0:0:7,0:238,0:-21.7513,-2.10721,0,-21.7513,-2.10721,-21.7513	1/2:11:0,6,5:0:0:6,5:216,173:-32.0363,-14.4042,-12.598,-17.9843,0,-16.4792	1/2:9:0,7,2:0:0:7,2:252,59:-25.6142,-5.00178,-2.89457,-20.9217,0,-20.3197	1/2:129:0,65,64:0:0:65,64:2271,2257:-368.858,-184.126,-164.559,-185.083,0,-165.817	1/2:81:0,46,35:0:0:46,35:1648,1225:-234.419,-100.011,-86.1637,-134.761,0,-124.225	1/2:36:0,19,17:0:0:19,17:672,584:-102.495,-47.7644,-42.0449,-55.0791,0,-49.9616	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:84:0,36,48:0:0:36,48:1270,1679:-239.337,-135.923,-125.086,-103.764,0,-89.3148	1/2:23:0,12,11:0:0:12,11:420,392:-66.4772,-32.3087,-28.6964,-34.5217,0,-31.2103	1/2:112:0,49,63:0:0:49,63:1731,2220:-322.046,-181.076,-166.326,-141.322,0,-122.357	1/2:28:0,18,10:0:0:18,10:625,358:-80.351,-29.5526,-24.134,-51.1524,0,-48.1421	1/2:38:0,17,21:0:0:17,21:591,717:-106.576,-58.5231,-53.4055,-48.3978,0,-42.0761	1/1:63:0,63,0:0:0:63,0:2247,0:-202.493,-18.9649,0,-202.493,-18.9649,-202.493	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/2:88:0,36,52:0:0:36,52:1292,1840:-255.615,-150.225,-139.388,-105.747,0,-90.0931	1/1:45:0,45,0:0:0:45,0:1607,0:-144.919,-13.5464,0,-144.919,-13.5464,-144.919	1/2:52:0,32,20:0:0:32,20:1144,704:-150.946,-57.6636,-48.0307,-93.6366,0,-87.616	1/2:84:0,43,41:0:0:43,41:1516,1441:-241.067,-117.641,-104.696,-123.778,0,-111.436	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:82:0,39,43:0:0:39,43:1385,1508:-235.92,-123.067,-111.327,-113.207,0,-100.262	1/1:31:0,31,0:0:0:31,0:1104,0:-99.6706,-9.33193,0,-99.6706,-9.33193,-99.6706	1/2:8:0,4,4:0:0:4,4:140,132:-22.4016,-11.001,-9.79687,-11.7405,0,-10.5363	1/2:76:1,42,33:1:34:42,33:1452,1180:-211.152,-93.4766,-83.5908,-115.23,0,-108.054	1/2:21:0,13,8:0:0:13,8:459,270:-59.6072,-22.2198,-18.3064,-37.7307,0,-35.3225	1/1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chr07	11980822	.	ATCTG	GTCTA,ATCTA	99550.7	PASS	AB=0.50184,0.491538;ABP=3.09019,4.70082;AC=137,51;AF=0.728723,0.271277;AN=188;AO=3424,1340;CIGAR=1X3M1X,4M1X;DP=4793;DPB=4793;DPRA=0,1.12201;EPP=7438.13,2912.78;EPPR=0;GTI=1;LEN=5,1;MEANALT=1.8617,2.35849;MQM=59.9252,59.8425;MQMR=0;NS=94;NUMALT=2;ODDS=1.75951;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=120242,47955;QR=0;RO=0;RPL=3424,1340;RPP=7438.13,2912.78;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=7438.13,2912.78;SAR=3424,1340;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,15,12:0:0:15,12:529,432:-78.6788,-35.6088,-31.0934,-43.4265,0,-39.8141	1/2:27:0,20,6:0:0:20,6:706,216:-75.0754,-17.5882,-11.5676,-57.4853,0,-55.6791	1/2:73:0,41,32:0:0:41,32:1400,1148:-207.587,-93.9969,-81.6546,-113.941,0,-104.308	1/2:85:0,43,41:0:0:43,41:1510,1472:-243.06,-120.172,-107.227,-122.98,0,-110.637	1/1:39:0,38,0:0:0:38,0:1343,0:-120.869,-11.4391,0,-120.869,-11.4391,-120.869	1/1:33:0,33,0:0:0:33,0:1154,0:-104.166,-9.93399,0,-104.166,-9.93399,-104.166	1/1:46:0,45,1:0:0:45,1:1580,36:-142.131,-13.5464,0,-139.193,-10.2491,-138.892	1/2:66:0,29,37:0:0:29,37:1018,1317:-190.54,-107.691,-98.9607,-83.2022,0,-72.064	1/1:52:0,51,0:0:0:51,0:1796,0:-161.643,-15.3525,0,-161.643,-15.3525,-161.643	1/2:31:0,10,20:0:0:10,20:349,712:-86.4882,-58.1025,-55.0922,-28.4494,0,-22.4288	1/1:55:0,55,0:0:0:55,0:1956,0:-176.314,-16.5567,0,-176.314,-16.5567,-176.314	1/1:62:0,62,0:0:0:62,0:2179,0:-196.376,-18.6639,0,-196.376,-18.6639,-196.376	1/2:47:0,29,18:0:0:29,18:1012,648:-135.538,-53.2333,-44.5035,-82.6604,0,-77.2419	1/2:58:0,33,25:0:0:33,25:1159,900:-167.803,-73.4769,-63.543,-94.6815,0,-87.1557	1/2:35:0,17,18:0:0:17,18:609,644:-102.539,-52.8721,-47.7545,-50.0249,0,-44.6064	1/1:45:0,45,0:0:0:45,0:1579,0:-142.4,-13.5464,0,-142.4,-13.5464,-142.4	1/1:20:0,20,0:0:0:20,0:700,0:-63.3231,-6.0206,0,-63.3231,-6.0206,-63.3231	1/1:22:0,22,0:0:0:22,0:782,0:-70.704,-6.62266,0,-70.704,-6.62266,-70.704	1/2:24:0,14,10:0:0:14,10:495,360:-70.0462,-29.734,-25.5196,-40.6694,0,-37.6591	1/2:93:0,54,39:0:0:54,39:1898,1404:-269.405,-114.919,-98.6631,-154.842,0,-143.102	1/1:85:0,85,0:0:0:85,0:2992,0:-269.517,-25.5876,0,-269.517,-25.5876,-269.517	1/2:54:0,18,36:0:0:18,36:628,1281:-155.831,-104.755,-99.3365,-51.4267,0,-40.5897	1/1:71:0,69,0:0:0:69,0:2398,0:-215.772,-20.7711,0,-215.772,-20.7711,-215.772	1/2:36:0,20,16:0:0:20,16:695,572:-103.496,-46.9969,-40.9763,-56.852,0,-52.0355	1/2:51:0,22,29:0:0:22,29:764,1011:-144.675,-82.5663,-75.9437,-62.456,0,-53.7261	1/2:133:0,68,64:0:0:68,64:2366,2300:-380.121,-187.743,-167.273,-192.479,0,-173.213	1/1:82:0,81,0:0:0:81,0:2844,0:-255.89,-24.3834,0,-255.89,-24.3834,-255.89	1/1:18:0,18,0:0:0:18,0:643,0:-58.2007,-5.41854,0,-58.2007,-5.41854,-58.2007	1/2:100:0,48,51:0:0:48,51:1683,1828:-286.041,-149.089,-134.639,-136.947,0,-121.595	1/1:73:0,69,3:0:0:69,3:2417,104:-217.458,-20.7711,0,-209.005,-12.258,-208.102	1/1:65:0,65,0:0:0:65,0:2285,0:-205.826,-19.567,0,-205.826,-19.567,-205.826	1/2:6:0,3,3:0:0:3,3:102,108:-17.4355,-9.17208,-8.26899,-8.61329,0,-7.7102	1/1:18:0,18,0:0:0:18,0:633,0:-57.2972,-5.41854,0,-57.2972,-5.41854,-57.2972	1/1:7:0,7,0:0:0:7,0:249,0:-22.7555,-2.10721,0,-22.7555,-2.10721,-22.7555	1/2:11:0,6,5:0:0:6,5:216,180:-32.6714,-15.0469,-13.2407,-17.9843,0,-16.4792	1/2:10:0,7,3:0:0:7,3:242,108:-28.8261,-9.17208,-7.06487,-20.0096,0,-19.1065	1/2:132:0,66,66:0:0:66,66:2326,2372:-383.245,-193.869,-174.001,-189.732,0,-169.864	1/2:81:0,44,36:0:0:44,36:1546,1283:-230.361,-104.528,-91.2823,-125.914,0,-115.077	1/2:36:0,19,17:0:0:19,17:666,608:-104.123,-49.9345,-44.2149,-54.5429,0,-49.4254	1/1:1:0,1,0:0:0:1,0:32,0:-3.19931,-0.30103,0,-3.19931,-0.30103,-3.19931	1/2:82:0,36,45:0:0:36,45:1267,1608:-233.226,-130.083,-119.246,-103.136,0,-89.59	1/2:22:0,12,10:0:0:12,10:425,360:-64.3515,-29.734,-26.1216,-34.9747,0,-31.9644	1/2:112:0,50,62:0:0:50,62:1741,2211:-322.024,-180.454,-165.402,-141.922,0,-123.259	1/2:28:0,18,10:0:0:18,10:642,360:-82.0652,-29.734,-24.3155,-52.6898,0,-49.6795	1/2:38:0,17,21:0:0:17,21:591,752:-109.731,-61.6846,-56.5671,-48.3981,0,-42.0765	1/1:65:0,63,0:0:0:63,0:2217,0:-199.438,-18.9649,0,-199.438,-18.9649,-199.438	1/1:43:0,43,0:0:0:43,0:1516,0:-136.733,-12.9443,0,-136.733,-12.9443,-136.733	1/2:87:0,36,49:0:0:36,49:1275,1752:-246.715,-142.854,-132.017,-103.857,0,-89.1069	1/1:49:0,48,0:0:0:48,0:1687,0:-151.894,-14.4494,0,-151.894,-14.4494,-151.894	1/2:52:0,32,20:0:0:32,20:1129,720:-151.037,-59.1082,-49.4752,-92.2857,0,-86.2651	1/2:84:0,42,41:0:0:42,41:1476,1472:-240.18,-120.133,-107.489,-120.1,0,-107.758	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:83:0,39,43:0:0:39,43:1381,1536:-237.772,-125.278,-113.538,-112.538,0,-99.5936	1/1:31:0,31,0:0:0:31,0:1093,0:-98.6795,-9.33193,0,-98.6795,-9.33193,-98.6795	1/2:8:0,4,4:0:0:4,4:129,144:-22.4927,-12.1095,-10.9054,-10.7243,0,-9.52017	1/2:75:0,42,32:0:0:42,32:1469,1152:-213.503,-93.9974,-81.3541,-119.502,0,-109.869	1/2:21:0,13,8:0:0:13,8:457,288:-61.053,-23.8592,-19.9458,-37.5504,0,-35.1422	1/1:3:0,3,0:0:0:3,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chr07	12747138	.	C	T	86075	PASS	AB=0.825581;ABP=161.376;AC=180;AF=0.957447;AN=188;AO=3793;CIGAR=1X;DP=3860;DPB=3860;DPRA=0;EPP=8230.72;EPPR=148.499;GTI=7;LEN=1;MEANALT=1;MQM=54.0061;MQMR=55.7313;NS=94;NUMALT=1;ODDS=8.86652;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135432;QR=2396;RO=67;RPL=0;RPP=8239.41;RPPR=148.499;RPR=3793;RUN=1;SAF=3792;SAP=8230.72;SAR=1;SRF=67;SRP=148.499;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:633:-57.2374,-5.41854,0	1/1:72:1,71:1:36:71:2556:-226.427,-18.0759,0	1/1:39:0,39:0:0:39:1385:-124.825,-11.7402,0	1/1:92:0,92:0:0:92:3304:-296.657,-27.6948,0	1/1:18:1,17:1:36:17:612:-51.7182,-1.82027,0	1/1:31:0,31:0:0:31:1108:-99.4573,-9.33193,0	1/1:102:0,102:0:0:102:3619:-325.319,-30.7051,0	1/1:46:0,46:0:0:46:1648:-148.268,-13.8474,0	1/1:29:0,29:0:0:29:1040:-93.7466,-8.72987,0	1/1:56:0,56:0:0:56:2001:-179.502,-16.8577,0	1/1:34:1,33:1:36:33:1167:-101.437,-6.63675,0	1/1:49:1,48:1:36:48:1724:-151.804,-11.2143,0	1/1:45:1,44:1:36:44:1580:-138.761,-9.94808,0	1/1:32:1,31:1:36:31:1112:-96.5188,-6.03469,0	1/1:32:2,30:2:72:30:1080:-90.5217,-2.79624,0	1/1:13:1,12:1:36:12:432:-35.4824,-0.315115,0	1/1:50:1,49:1:36:49:1760:-154.736,-11.4532,0	1/1:24:2,22:2:72:22:792:-64.6917,-0.40653,0	1/1:28:1,27:1:36:27:968:-83.5887,-4.90783,0	1/1:95:0,95:0:0:95:3393:-304.809,-28.5979,0	1/1:62:0,62:0:0:62:2205:-198.251,-18.6639,0	1/1:20:0,20:0:0:20:711:-64.2182,-6.0206,0	1/1:74:1,73:1:36:73:2609:-229.784,-18.7552,0	1/1:46:0,46:0:0:46:1637:-147.244,-13.8474,0	1/1:40:0,40:0:0:40:1423:-128.056,-12.0412,0	1/1:165:0,165:0:0:165:5867:-525.696,-49.67,0	1/1:53:0,53:0:0:53:1885:-169.684,-15.9546,0	0/1:31:3,28:3:104:28:1004:-81.2626,0,-0.29876	1/1:108:0,108:0:0:108:3839:-344.762,-32.5112,0	1/1:36:0,36:0:0:36:1277:-114.8,-10.8371,0	1/1:44:1,43:1:36:43:1544:-135.027,-9.64705,0	1/1:15:0,15:0:0:15:540:-48.3975,-4.51545,0	1/1:16:0,16:0:0:16:561:-50.7676,-4.81648,0	1/1:14:0,14:0:0:14:500:-45.2908,-4.21442,0	1/1:4:0,4:0:0:4:129:-11.9204,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.4854,-2.70927,0	1/1:41:1,40:1:36:40:1440:-126.12,-8.74396,0	1/1:19:0,19:0:0:19:669:-60.4734,-5.71957,0	1/1:37:1,36:1:32:36:1292:-113.164,-7.9388,0	1/1:8:0,8:0:0:8:288:-26.2403,-2.40824,0	1/1:79:0,79:0:0:79:2794:-250.391,-23.7814,0	0/1:17:2,15:2:72:15:540:-43.6236,0,-1.69972	1/1:64:0,64:0:0:64:2292:-205.798,-19.2659,0	1/1:79:7,72:7:248:72:2573:-208.72,-1.21752,0	1/1:33:1,32:1:36:32:1137:-98.8968,-6.33572,0	1/1:32:1,31:1:36:31:1086:-94.2851,-6.13026,0	0/1:40:5,35:5:180:35:1252:-100.678,0,-4.50148	1/1:118:0,118:0:0:118:4220:-377.604,-35.5215,0	1/1:58:0,58:0:0:58:2079:-186.975,-17.4597,0	1/1:71:0,71:0:0:71:2548:-229.254,-21.3731,0	1/1:36:0,36:0:0:36:1273:-114.394,-10.8371,0	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:25:0,25:0:0:25:896:-80.8944,-7.52575,0	1/1:35:0,35:0:0:35:1256:-112.854,-10.5361,0	1/1:2:0,2:0:0:2:57:-5.38585,-0.60206,0	1/1:39:0,39:0:0:39:1366:-122.69,-11.7402,0	1/1:16:0,16:0:0:16:568:-51.3797,-4.81648,0	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.6614,-1.80618,0	1/1:36:0,36:0:0:36:1296:-116.104,-10.8371,0	1/1:45:3,42:3:108:42:1512:-125.893,-3.47118,0	1/1:2:0,2:0:0:2:72:-6.72017,-0.60206,0	1/1:110:1,109:1:36:109:3878:-345.07,-29.515,0	1/1:65:0,65:0:0:65:2310:-207.574,-19.567,0	1/1:29:0,29:0:0:29:1040:-93.736,-8.72987,0	1/1:34:0,34:0:0:34:1220:-109.91,-10.235,0	1/1:56:1,55:1:36:55:1976:-174.218,-13.2594,0	1/1:26:0,26:0:0:26:932:-84.0817,-7.82678,0	0/1:11:1,10:1:36:10:360:-29.3992,0,-0.267437	1/1:45:0,45:0:0:45:1605:-144.638,-13.5464,0	0/1:25:11,14:11:396:14:500:-37.2828,0,-28.457	1/1:42:0,42:0:0:42:1493:-133.223,-12.6433,0	1/1:40:1,39:1:32:39:1377:-120.266,-8.84393,0	1/1:33:0,33:0:0:33:1188:-107.141,-9.93399,0	1/1:49:0,49:0:0:49:1760:-158.522,-14.7505,0	1/1:86:0,86:0:0:86:3073:-275.431,-25.8886,0	1/1:34:0,34:0:0:34:1224:-110.36,-10.235,0	1/1:47:0,47:0:0:47:1645:-147.74,-14.1484,0	1/1:26:0,26:0:0:26:932:-84.1416,-7.82678,0	1/1:47:1,46:1:36:46:1656:-146.004,-11.2456,0	1/1:13:0,13:0:0:13:468:-42.2474,-3.91339,0	1/1:136:0,136:0:0:136:4824:-432.995,-40.9401,0	0/1:25:3,22:3:108:22:792:-63.8469,0,-2.54942	1/1:37:1,36:1:36:36:1296:-113.032,-7.53984,0	1/1:22:0,22:0:0:22:784:-70.7856,-6.62266,0	1/1:51:1,50:1:36:50:1800:-158.225,-11.8315,0	1/1:21:1,20:1:36:20:720:-61.4835,-2.72336,0	1/1:26:1,25:1:36:25:900:-77.5345,-4.29066,0	1/1:27:0,27:0:0:27:972:-87.7263,-8.12781,0	1/1:20:0,20:0:0:20:716:-64.3518,-6.0206,0	0/1:17:3,14:3:108:14:504:-40.4701,0,-4.74131	0/1:6:2,4:2:72:4:144:-11.4752,0,-5.03054	1/1:39:0,39:0:0:39:1392:-125.205,-11.7402,0	1/1:33:0,33:0:0:33:1188:-106.917,-9.93399,0
chr07	12747144	.	TGGG	TGGT	84291.8	PASS	AB=0.802326;ABP=139.561;AC=180;AF=0.957447;AN=188;AO=3703;CIGAR=3M1X;DP=3806;DPB=3806;DPRA=0;EPP=8017.94;EPPR=159.356;GTI=8;LEN=1;MEANALT=1.26596;MQM=54.1075;MQMR=56.6806;NS=94;NUMALT=1;ODDS=0.383427;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=36;PRO=1;QA=132497;QR=2547;RO=72;RPL=2;RPP=8026.61;RPPR=159.356;RPR=3701;RUN=1;SAF=3702;SAP=8035.29;SAR=1;SRF=72;SRP=159.356;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:608:-54.9967,-5.11751,0	1/1:73:0,73:0:0:73:2613:-235.153,-21.9752,0	1/1:39:0,39:0:0:39:1400:-126.155,-11.7402,0	1/1:88:0,85:0:0:85:3036:-272.578,-25.5876,0	1/1:18:1,17:1:36:17:612:-51.7182,-1.82027,0	1/1:31:0,30:0:0:30:1072:-96.3397,-9.0309,0	1/1:98:0,98:0:0:98:3512:-315.438,-29.5009,0	1/1:44:0,44:0:0:44:1567:-141.216,-13.2453,0	1/1:27:0,27:0:0:27:968:-87.2743,-8.12781,0	1/1:54:0,53:0:0:53:1896:-169.943,-15.9546,0	1/1:32:1,31:1:36:31:1112:-96.4083,-6.03469,0	1/1:46:1,45:1:36:45:1620:-142.455,-10.3113,0	1/1:43:2,41:2:69:41:1472:-126.096,-6.39175,0	1/1:32:1,30:1:36:30:1080:-93.6038,-6.0933,0	1/1:31:2,29:2:71:29:1044:-87.3825,-2.58987,0	1/1:14:1,13:1:35:13:468:-38.7754,-0.715791,0	1/1:49:3,44:3:107:44:1576:-131.897,-4.51266,0	1/1:24:2,22:2:72:22:792:-64.6917,-0.40653,0	1/1:29:1,28:1:36:28:1004:-86.8249,-5.20886,0	1/1:95:0,94:0:0:94:3354:-301.192,-28.2968,0	1/1:61:0,61:0:0:61:2180:-196.003,-18.3628,0	1/1:20:0,20:0:0:20:716:-64.669,-6.0206,0	1/1:72:1,71:1:36:71:2548:-225.402,-18.1532,0	1/1:45:0,45:0:0:45:1616:-144.693,-13.5464,0	1/1:38:0,38:0:0:38:1364:-122.72,-11.4391,0	1/1:166:0,166:0:0:166:5911:-530.397,-49.971,0	1/1:53:0,53:0:0:53:1870:-168.336,-15.9546,0	0/1:30:6,24:6:214:24:860:-68.6125,0,-10.5061	1/1:106:0,105:0:0:105:3771:-338.349,-31.6082,0	1/1:29:0,26:0:0:26:936:-84.1254,-7.82678,0	1/1:44:1,43:1:36:43:1529:-133.896,-9.64705,0	1/1:15:0,15:0:0:15:540:-48.3975,-4.51545,0	1/1:16:0,16:0:0:16:576:-52.1222,-4.81648,0	1/1:15:0,15:0:0:15:540:-48.8676,-4.51545,0	1/1:5:0,5:0:0:5:180:-16.5425,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2493,-2.40824,0	1/1:43:1,42:1:36:42:1512:-132.588,-9.34602,0	1/1:19:0,19:0:0:19:684:-61.8266,-5.71957,0	1/1:37:1,35:1:25:35:1260:-111.02,-8.63734,0	1/1:8:0,8:0:0:8:288:-26.2403,-2.40824,0	1/1:74:0,74:0:0:74:2648:-236.913,-22.2762,0	0/1:17:2,15:2:72:15:540:-43.6236,0,-1.69972	1/1:65:0,63:0:0:63:2256:-202.717,-18.9649,0	1/1:77:7,70:7:245:70:2520:-203.992,-0.859489,0	1/1:33:1,32:1:36:32:1140:-99.0546,-6.33572,0	1/1:34:1,33:1:30:33:1176:-102.74,-7.26157,0	0/1:40:5,35:5:180:35:1256:-100.988,0,-4.50148	1/1:114:0,114:0:0:114:4047:-362.704,-34.3174,0	1/1:58:0,58:0:0:58:2079:-187.086,-17.4597,0	1/1:67:0,67:0:0:67:2400:-215.96,-20.169,0	1/1:34:0,33:0:0:33:1184:-106.26,-9.93399,0	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:25:0,25:0:0:25:900:-81.2382,-7.52575,0	1/1:34:0,34:0:0:34:1199:-107.959,-10.235,0	1/1:2:0,2:0:0:2:68:-6.00582,-0.60206,0	1/1:40:0,40:0:0:40:1421:-127.181,-12.0412,0	1/1:14:0,14:0:0:14:504:-45.6274,-4.21442,0	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.6614,-1.80618,0	1/1:37:0,34:0:0:34:1220:-108.919,-10.235,0	1/1:46:3,43:3:100:43:1544:-129.515,-4.51752,0	1/1:2:0,2:0:0:2:63:-5.96244,-0.60206,0	1/1:109:0,109:0:0:109:3908:-351.303,-32.8123,0	1/1:65:0,65:0:0:65:2332:-209.553,-19.567,0	1/1:29:0,29:0:0:29:1040:-93.736,-8.72987,0	1/1:34:0,34:0:0:34:1224:-110.263,-10.235,0	1/1:53:1,52:1:36:52:1830:-161.109,-12.3563,0	1/1:26:0,26:0:0:26:932:-84.0817,-7.82678,0	0/1:11:1,10:1:36:10:360:-29.3992,0,-0.267437	1/1:45:1,43:1:35:43:1544:-135.651,-10.1014,0	0/1:26:11,15:11:394:15:540:-40.134,0,-27.9748	1/1:42:0,40:0:0:40:1427:-128.274,-12.0412,0	1/1:40:1,39:1:35:39:1391:-121.201,-8.54663,0	1/1:33:0,33:0:0:33:1175:-105.972,-9.93399,0	1/1:49:0,49:0:0:49:1744:-157.091,-14.7505,0	1/1:87:0,86:0:0:86:3059:-274.511,-25.8886,0	1/1:33:0,33:0:0:33:1172:-105.688,-9.93399,0	1/1:44:0,42:0:0:42:1504:-135.281,-12.6433,0	1/1:26:0,26:0:0:26:932:-84.1416,-7.82678,0	1/1:48:0,46:0:0:46:1656:-148.668,-13.8474,0	1/1:13:0,13:0:0:13:468:-42.2474,-3.91339,0	1/1:136:0,136:0:0:136:4851:-435.485,-40.9401,0	0/1:25:3,22:3:108:22:792:-63.8469,0,-2.54942	1/1:37:1,36:1:36:36:1292:-112.675,-7.53984,0	1/1:21:0,20:0:0:20:720:-64.6734,-6.0206,0	1/1:51:1,50:1:36:50:1784:-156.796,-11.8315,0	1/1:21:1,20:1:36:20:720:-61.4835,-2.72336,0	1/1:27:1,25:1:36:25:896:-77.2616,-4.6426,0	1/1:27:0,27:0:0:27:972:-87.7263,-8.12781,0	1/1:19:0,19:0:0:19:684:-61.5173,-5.71957,0	0/1:17:4,13:4:143:13:464:-36.8715,0,-7.90318	0/1:6:2,4:2:72:4:144:-11.4752,0,-5.03054	1/1:39:0,38:0:0:38:1360:-122.041,-11.4391,0	1/1:32:0,32:0:0:32:1152:-103.683,-9.63296,0
chr07	12827718	.	C	A	51241.3	PASS	AB=0.503456;ABP=3.64073;AC=53;AF=0.284946;AN=186;AO=3076;CIGAR=1X;DP=10292;DPB=10292;DPRA=1.4053;EPP=6673.78;EPPR=15535.8;GTI=2;LEN=1;MEANALT=1.08333;MQM=59.9987;MQMR=59.9958;NS=93;NUMALT=1;ODDS=0.979583;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109188;QR=257684;RO=7209;RPL=1;RPP=6673.78;RPPR=15544.4;RPR=3075;RUN=1;SAF=3076;SAP=6682.46;SAR=0;SRF=7208;SRP=15648.5;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:42,22:42:1496:22:777:-50.9844,0,-115.669	0/1:203:94,109:94:3347:109:3814:-282.345,0,-240.339	0/1:95:46,49:46:1643:49:1726:-127.023,0,-119.56	0/1:203:101,102:101:3595:102:3599:-263.006,0,-262.646	0/0:133:131,0:131:4687:0:0:0,-39.4349,-421.63	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:189:188,1:188:6713:1:36:0,-53.2964,-600.647	0/1:237:122,115:122:4358:115:4113:-299.009,0,-321.05	0/0:132:130,2:130:4629:2:72:0,-32.8992,-409.937	0/1:125:50,75:50:1777:75:2646:-200.756,0,-122.582	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.899	0/1:71:32,39:32:1152:39:1400:-104.926,0,-82.617	0/1:60:25,34:25:900:34:1224:-92.3464,0,-63.2004	0/1:66:35,31:35:1260:31:1108:-80.163,0,-93.8375	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:75:75,0:75:2666:0:0:0,-22.5772,-240.185	0/1:45:24,21:24:864:21:752:-54.4599,0,-64.5362	0/1:252:117,134:117:4199:134:4733:-350.208,0,-302.171	0/0:179:179,0:179:6385:0:0:0,-53.8844,-574.74	0/1:79:24,55:24:864:55:1957:-152.622,0,-54.3012	0/0:76:76,0:76:2702:0:0:0,-22.8783,-243.424	0/1:189:125,63:125:4465:63:2264:-147.069,0,-345.066	0/1:106:60,46:60:2148:46:1622:-114.356,0,-161.678	0/1:352:175,177:175:6256:177:6255:-457.084,0,-457.173	0/0:241:241,0:241:8610:0:0:0,-72.5482,-774.897	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:303:153,149:153:5483:149:5258:-382.083,0,-402.325	0/0:148:146,2:146:5226:2:72:0,-37.7157,-463.64	0/0:108:107,1:107:3835:1:36:0,-28.913,-341.747	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:236:124,112:124:4431:112:4008:-289.866,0,-327.919	0/1:154:68,86:68:2435:86:3079:-230.979,0,-173.046	0/1:53:28,25:28:995:25:885:-64.0119,0,-73.9094	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:176:96,80:96:3396:80:2857:-204.385,0,-252.874	0/1:29:18,11:18:640:11:392:-26.8902,0,-49.1994	0/1:174:102,72:102:3631:72:2524:-175.029,0,-274.612	0/1:79:43,36:43:1544:36:1284:-92.082,0,-115.472	0/1:80:39,41:39:1396:41:1468:-108.334,0,-101.857	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.372	0/0:133:133,0:133:4763:0:0:0,-40.037,-428.827	0/1:182:100,82:100:3562:82:2884:-205.005,0,-265.998	0/0:179:179,0:179:6394:0:0:0,-53.8844,-575.549	0/1:180:76,104:76:2720:104:3677:-276.947,0,-190.856	0/1:175:80,95:80:2868:95:3393:-252.904,0,-205.677	.:.:.:.:.:.:.:.	0/1:119:71,48:71:2556:48:1683:-115.929,0,-194.467	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:14:4,10:4:129:10:360:-28.5299,0,-7.71324	0/1:152:72,79:72:2580:79:2825:-208.672,0,-186.634	0/1:36:14,22:14:496:22:788:-60.4077,0,-34.1339	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:56:56,0:56:2007:0:0:0,-16.8577,-180.903	0/0:105:105,0:105:3751:0:0:0,-31.6081,-337.79	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:217:217,0:217:7755:0:0:0,-65.3235,-697.983	0/0:314:309,5:309:11023:5:180:0,-77.9714,-975.415	0/1:103:47,56:47:1684:56:1993:-148.636,0,-120.841	0/0:98:98,0:98:3496:0:0:0,-29.5009,-314.852	0/1:172:76,96:76:2708:96:3424:-256.598,0,-192.188	0/1:80:27,53:27:968:53:1832:-141.07,0,-63.355	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/1:71:43,28:43:1535:28:1004:-69.3027,0,-117.069	0/1:18:7,11:7:248:11:392:-30.2015,0,-17.2457	0/0:92:92,0:92:3270:0:0:0,-27.6948,-294.521	0/1:101:59,42:59:2098:42:1463:-101.554,0,-158.684	0/0:177:177,0:177:6340:0:0:0,-53.2823,-570.69	0/0:179:179,0:179:6389:0:0:0,-53.8844,-575.099	0/1:161:77,84:77:2752:84:3004:-222.125,0,-199.456	0/0:120:117,3:117:4175:3:104:0,-26.4208,-366.23	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:187:186,1:186:6660:1:36:0,-52.6943,-595.879	0/1:135:62,73:62:2211:73:2578:-191.628,0,-158.615	0/1:300:142,158:142:5080:158:5644:-417.773,0,-367.036	0/1:119:67,52:67:2400:52:1864:-132.217,0,-180.434	0/1:73:37,36:37:1324:36:1273:-92.8957,0,-97.4869	0/1:113:52,61:52:1872:61:2158:-160.469,0,-134.743	0/1:151:86,65:86:3076:65:2319:-163.514,0,-231.612	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:83:83,0:83:2967:0:0:0,-24.9855,-267.263	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:75:31,44:31:1099:44:1549:-117.122,0,-76.6422	0/1:77:21,56:21:752:56:2012:-158.174,0,-44.8269	0/0:144:144,0:144:5159:0:0:0,-43.3483,-464.45	0/0:122:121,1:121:4335:1:36:0,-33.1274,-386.726
chr07	12827740	.	C	T	335972	PASS	AB=0.486429;ABP=20.338;AC=134;AF=0.712766;AN=188;AO=12751;CIGAR=1X;DP=18347;DPB=18347;DPRA=0;EPP=27674.1;EPPR=12148.1;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9882;MQMR=59.99;NS=94;NUMALT=1;ODDS=3.04995;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=454753;QR=197567;RO=5593;RPL=7080;RPP=341.1;RPPR=134.068;RPR=5671;RUN=1;SAF=7080;SAP=341.1;SAR=5671;SRF=3087;SRP=134.068;SRR=2506;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:123:57,66:57:2015:66:2340:-173.831,0,-144.596	0/1:262:142,120:142:5028:120:4279:-306.416,0,-373.798	0/1:229:111,118:111:3944:118:4244:-313.201,0,-286.216	0/1:377:209,168:209:7432:168:5996:-426.258,0,-555.438	1/1:194:0,194:0:0:194:6924:-623.228,-58.3998,0	1/1:91:0,91:0:0:91:3243:-292.092,-27.3937,0	1/1:284:2,282:2:72:282:10030:-895.801,-78.6558,0	0/1:311:149,162:149:5252:162:5808:-429.212,0,-379.199	1/1:239:2,237:2:68:237:8444:-753.508,-65.4885,0	0/1:204:112,91:112:3971:91:3199:-226.663,0,-296.112	1/1:125:0,125:0:0:125:4466:-402.11,-37.6288,0	1/1:219:1,218:1:21:218:7743:-694.802,-63.8256,0	0/1:156:83,73:83:2929:73:2590:-186.389,0,-216.882	0/1:143:73,70:73:2527:70:2508:-182.925,0,-184.633	0/1:141:63,78:63:2252:78:2771:-207.186,0,-160.498	1/1:129:0,129:0:0:129:4607:-414.795,-38.8329,0	1/1:116:0,116:0:0:116:4147:-373.413,-34.9195,0	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	0/1:86:45,41:45:1576:41:1449:-104.815,0,-116.239	0/1:357:189,168:189:6710:168:6011:-433.627,0,-496.512	1/1:300:0,300:0:0:300:10714:-964.168,-90.309,0	0/1:145:98,47:98:3461:47:1688:-108.558,0,-268.052	1/1:164:0,164:0:0:164:5848:-526.432,-49.3689,0	0/1:241:74,167:74:2599:167:5945:-462.609,0,-161.61	0/1:208:116,92:116:4111:92:3308:-235.323,0,-307.562	0/1:537:258,278:258:9114:278:9912:-730.295,0,-658.446	1/1:520:0,520:0:0:520:18610:-1674.47,-156.536,0	1/1:83:0,83:0:0:83:2941:-264.922,-24.9855,0	0/1:610:323,287:323:11441:287:10264:-740.057,0,-845.947	1/1:243:9,234:9:324:234:8313:-718.674,-43.6444,0	1/1:193:1,192:1:36:192:6849:-612.882,-54.5005,0	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:24:9,15:9:309:15:528:-40.6266,0,-20.916	0/1:464:244,220:244:8533:220:7841:-566.04,0,-628.305	0/1:221:120,101:120:4250:101:3613:-258.842,0,-316.152	0/1:120:55,65:55:1955:65:2293:-170.504,0,-140.101	0/1:11:9,2:9:315:2:72:-3.52539,0,-25.3759	0/1:276:131,145:131:4611:145:5137:-379.388,0,-332.072	0/1:72:34,38:34:1204:38:1352:-100.306,0,-86.9917	0/1:350:161,189:161:5713:189:6741:-501.404,0,-408.929	0/1:140:70,70:70:2473:70:2520:-184.907,0,-180.679	0/1:155:78,77:78:2768:77:2748:-200.895,0,-202.701	1/1:239:0,239:0:0:239:8511:-765.991,-71.9462,0	1/1:235:0,235:0:0:235:8380:-754.199,-70.7421,0	0/1:297:148,148:148:5244:148:5279:-385.783,0,-382.632	1/1:265:0,265:0:0:265:9442:-849.741,-79.773,0	0/1:262:138,124:138:4906:124:4407:-317.934,0,-362.821	0/1:232:119,113:119:4222:113:3990:-289.449,0,-310.321	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:261:118,143:118:4200:143:5128:-383.092,0,-299.612	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	0/1:26:19,7:19:650:7:228:-13.0113,0,-50.9896	0/1:276:147,129:147:5203:129:4600:-331.079,0,-385.328	0/1:83:45,38:45:1592:38:1364:-98.0752,0,-118.582	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	1/1:37:0,37:0:0:37:1311:-118.291,-11.1381,0	1/1:137:1,136:1:36:136:4845:-432.607,-37.6428,0	1/1:212:0,212:0:0:212:7560:-680.441,-63.8184,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:312:1,311:1:36:311:11130:-997.989,-90.3231,0	1/1:436:8,428:8:270:428:15227:-1344.89,-106.621,0	0/1:173:92,81:92:3278:81:2887:-207.988,0,-243.162	1/1:147:0,147:0:0:147:5222:-470.116,-44.2514,0	0/1:309:176,133:176:6226:133:4743:-334.009,0,-467.421	0/1:210:137,73:137:4857:73:2612:-172.112,0,-374.068	1/1:76:0,76:0:0:76:2698:-243.064,-22.8783,0	1/1:114:0,114:0:0:114:4067:-366.213,-34.3174,0	0/1:142:52,90:52:1833:90:3232:-248.355,0,-122.502	0/1:56:25,31:25:887:31:1112:-83.5337,0,-63.2904	1/1:189:0,189:0:0:189:6749:-607.484,-56.8947,0	0/1:191:85,106:85:2982:106:3793:-284.07,0,-211.07	1/1:318:0,318:0:0:318:11312:-1017.95,-95.7275,0	1/1:290:0,290:0:0:290:10306:-927.465,-87.2987,0	0/1:262:146,116:146:5115:116:4134:-293.372,0,-381.625	1/1:177:3,174:3:93:174:6225:-551.669,-44.6056,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:298:1,297:1:36:297:10626:-952.646,-86.1087,0	0/1:216:115,101:115:4082:101:3583:-257.655,0,-302.544	0/1:478:251,227:251:8825:227:8116:-586.562,0,-650.353	0/1:202:95,107:95:3343:107:3819:-283.013,0,-240.281	0/1:163:88,75:88:3074:75:2673:-191.746,0,-227.82	0/1:169:86,83:86:3048:83:2975:-217.108,0,-223.674	0/1:328:150,178:150:5253:178:6333:-471.327,0,-374.173	1/1:88:0,88:0:0:88:3139:-282.736,-26.4906,0	1/1:167:1,166:1:36:166:5916:-528.951,-46.6737,0	1/1:157:2,155:2:72:155:5484:-486.853,-40.425,0	0/1:65:34,31:34:1193:31:1101:-79.8314,0,-88.1062	0/1:244:130,114:130:4580:114:4065:-292.585,0,-338.917	0/1:160:115,45:115:4049:45:1608:-96.8453,0,-316.435	1/1:251:0,251:0:0:251:8980:-808.178,-75.5585,0	1/1:241:1,240:1:36:240:8577:-768.329,-68.95,0
chr07	12827766	.	TAGTA	TAGTT,GAGTT	172468	PASS	AB=0.464374,0.530478;ABP=56.5441,42.1898;AC=135,53;AF=0.718085,0.281915;AN=188;AO=5626,2587;CIGAR=4M1X,1X3M1X;DP=8251;DPB=8251.2;DPRA=0,1.13365;EPP=12141.7,5585.92;EPPR=0;GTI=1;LEN=1,5;MEANALT=1.93617,2.4;MQM=59.9614,59.9382;MQMR=0;NS=94;NUMALT=2;ODDS=0.967012;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=200303,90101;QR=0;RO=0;RPL=5617,2583;RPP=12141.7,5585.92;RPPR=0;RPR=9,4;RUN=1,1;SAF=0,0;SAP=12219.7,5620.61;SAR=5626,2587;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:65:0,25,40:0:0:25,40:896,1397:-187.041,-113.961,-106.435,-73.4346,0,-61.3934	1/2:66:0,29,37:0:0:29,37:1040,1248:-186.153,-101.318,-92.588,-85.1845,0,-74.0464	1/2:139:0,73,65:0:0:73,65:2596,2256:-394.883,-183.378,-161.403,-211.496,0,-191.929	1/2:180:0,70,109:0:0:70,109:2493,3783:-510.843,-307.644,-286.572,-203.328,0,-170.516	1/1:59:0,59,0:0:0:59,0:2120,0:-191.068,-17.7608,0,-191.068,-17.7608,-191.068	1/1:47:0,47,0:0:0:47,0:1677,0:-151.215,-14.1484,0,-151.215,-14.1484,-151.215	1/1:105:0,105,0:0:0:105,0:3764,0:-338.954,-31.6082,0,-338.954,-31.6082,-338.954	1/2:78:0,39,39:0:0:39,39:1388,1342:-222.465,-109.336,-97.5958,-113.479,0,-101.739	1/1:111:0,111,0:0:0:111,0:3946,0:-355.331,-33.4143,0,-355.331,-33.4143,-355.331	1/2:80:0,41,39:0:0:41,39:1426,1366:-227.438,-111.497,-99.1549,-116.289,0,-104.549	1/1:95:0,95,0:0:0:95,0:3397,0:-305.943,-28.5979,0,-305.943,-28.5979,-305.943	1/1:137:0,136,0:0:0:136,0:4876,0:-438.721,-40.9401,0,-438.721,-40.9401,-438.721	1/2:87:0,40,47:0:0:40,47:1420,1668:-251.961,-136.259,-124.218,-116.056,0,-101.908	1/2:82:0,43,39:0:0:43,39:1540,1352:-235.833,-110.236,-97.2917,-125.949,0,-114.209	1/2:80:0,46,33:0:0:46,33:1628,1167:-227.651,-95.0434,-81.1961,-132.602,0,-122.668	1/1:77:0,77,0:0:0:77,0:2748,0:-247.563,-23.1793,0,-247.563,-23.1793,-247.563	1/1:32:0,32,0:0:0:32,0:1140,0:-102.719,-9.63296,0,-102.719,-9.63296,-102.719	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/2:43:0,18,25:0:0:18,25:644,879:-124.418,-71.9013,-66.4828,-52.8721,0,-45.3463	1/2:104:0,50,51:0:0:50,51:1796,1766:-290.021,-143.503,-128.452,-146.511,0,-131.159	1/1:131:0,131,0:0:0:131,0:4657,0:-419.294,-39.4349,0,-419.294,-39.4349,-419.294	1/2:67:0,23,44:0:0:23,44:824,1538:-192.67,-125.465,-118.541,-67.5596,0,-54.3143	1/1:90:0,89,0:0:0:89,0:3139,0:-282.374,-26.7917,0,-282.374,-26.7917,-282.374	1/2:55:0,42,13:0:0:42,13:1508,454:-160.299,-37.2787,-24.6354,-123.371,0,-119.458	1/2:106:0,34,72:0:0:34,72:1186,2541:-303.726,-207.27,-197.035,-96.8057,0,-75.1316	1/2:188:0,98,89:0:0:98,89:3463,3060:-530.521,-248.506,-219.005,-282.112,0,-255.321	1/1:284:0,284,0:0:0:284,0:10121,0:-910.777,-85.4925,0,-910.777,-85.4925,-910.777	1/1:43:0,42,0:0:0:42,0:1504,0:-135.295,-12.6433,0,-135.295,-12.6433,-135.295	1/2:310:0,126,184:0:0:126,184:4485,6408:-886.977,-521.44,-483.51,-365.89,0,-310.501	1/1:95:0,87,8:0:0:87,8:3097,279:-278.608,-26.1896,0,-255.917,-3.14939,-253.508	1/1:84:0,84,0:0:0:84,0:2989,0:-269.241,-25.2865,0,-269.241,-25.2865,-269.241	1/2:13:0,5,8:0:0:5,8:176,287:-38.0937,-23.7682,-22.2631,-14.6799,0,-12.2716	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:2:0,1,1:0:0:1,1:36,35:-6.14,-3.1976,-2.89657,-3.29724,0,-2.99621	1/2:23:0,13,10:0:0:13,10:449,331:-63.5872,-27.1003,-23.1869,-36.8241,0,-33.8138	1/2:234:0,100,130:0:0:100,130:3592,4562:-664.289,-371.262,-341.159,-293.023,0,-253.889	1/2:65:0,29,36:0:0:29,36:1032,1258:-186.794,-102.685,-93.9551,-84.4623,0,-73.6252	1/2:68:0,37,31:0:0:37,31:1328,1097:-198.034,-89.7081,-78.57,-108.682,0,-99.3499	1/2:11:0,2,9:0:0:2,9:72,313:-31.674,-25.797,-25.1949,-6.23466,0,-3.52539	1/2:100:0,52,48:0:0:52,48:1829,1681:-286.01,-137.126,-121.472,-149.235,0,-134.786	1/2:43:0,19,23:0:0:19,23:680,801:-120.581,-65.1252,-59.4057,-55.4499,0,-48.5262	1/2:177:0,88,89:0:0:88,89:3137,3102:-508.221,-252.615,-226.125,-255.958,0,-229.167	1/2:62:0,27,35:0:0:27,35:964,1235:-179.512,-100.918,-92.7906,-78.949,0,-68.413	1/2:78:0,40,38:0:0:40,38:1432,1331:-225.424,-108.65,-96.6084,-117.128,0,-105.689	1/1:119:0,117,0:0:0:117,0:4146,0:-373.072,-35.2205,0,-373.072,-35.2205,-373.072	1/1:102:0,102,0:0:0:102,0:3637,0:-327.534,-30.7051,0,-327.534,-30.7051,-327.534	1/2:120:0,51,69:0:0:51,69:1820,2376:-341.702,-193.325,-177.973,-148.729,0,-127.958	1/1:91:0,91,0:0:0:91,0:3230,0:-290.922,-27.3937,0,-290.922,-27.3937,-290.922	1/2:81:0,48,33:0:0:48,33:1705,1165:-234.153,-95.2224,-80.7729,-139.284,0,-129.35	1/2:55:0,33,22:0:0:33,22:1176,758:-157.779,-61.9143,-51.9803,-96.2138,0,-89.5911	1/2:15:0,8,7:0:0:8,7:284,248:-43.6978,-20.5571,-18.1489,-23.4951,0,-21.3879	1/2:145:0,71,74:0:0:71,74:2543,2548:-414.685,-207.288,-185.915,-207.748,0,-185.472	1/1:43:0,43,0:0:0:43,0:1517,0:-136.821,-12.9443,0,-136.821,-12.9443,-136.821	1/2:12:0,3,9:0:0:3,9:108,307:-34.0683,-25.2513,-24.3482,-9.17208,0,-6.46281	1/2:132:0,63,68:0:0:63,68:2252,2351:-374.623,-191.002,-172.037,-183.614,0,-163.144	1/2:48:0,25,23:0:0:25,23:892,791:-137.305,-64.5813,-57.0556,-73.0739,0,-66.1502	1/2:13:0,3,10:0:0:3,10:108,343:-37.0064,-28.1902,-27.2871,-9.17208,0,-6.16178	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:86:0,83,0:0:0:83,0:2946,0:-265.014,-24.9855,0,-265.014,-24.9855,-265.014	1/1:107:0,106,0:0:0:106,0:3780,0:-340.04,-31.9092,0,-340.04,-31.9092,-340.04	1/1:3:0,2,0:0:0:2,0:72,0:-6.47689,-0.60206,0,-6.47689,-0.60206,-6.47689	1/1:103:0,103,0:0:0:103,0:3601,0:-324.295,-31.0061,0,-324.295,-31.0061,-324.295	1/1:125:0,122,3:0:0:122,3:4303,106:-386.6,-36.7257,0,-377.968,-27.7396,-377.064	1/2:71:0,32,37:0:0:32,37:1132,1266:-194.948,-102.741,-93.108,-92.1962,0,-81.0581	1/1:54:0,54,0:0:0:54,0:1906,0:-171.814,-16.2556,0,-171.814,-16.2556,-171.814	1/2:146:0,60,86:0:0:60,86:2118,3012:-417.897,-245.425,-227.364,-172.824,0,-146.935	1/2:131:0,46,83:0:0:46,83:1621,2889:-366.934,-234.956,-221.109,-132.017,0,-107.031	1/1:58:0,57,0:0:0:57,0:2040,0:-183.512,-17.1587,0,-183.512,-17.1587,-183.512	1/1:60:0,60,0:0:0:60,0:2129,0:-191.877,-18.0618,0,-191.877,-18.0618,-191.877	1/2:69:0,45,23:0:0:45,23:1620,823:-199.295,-67.1098,-53.5634,-132.184,0,-125.26	1/2:37:0,22,14:0:0:22,14:788,494:-104.515,-40.2461,-33.6235,-64.2899,0,-60.0755	1/1:97:0,97,0:0:0:97,0:3478,0:-313.23,-29.1999,0,-313.23,-29.1999,-313.23	1/2:92:0,48,44:0:0:48,44:1705,1496:-260.572,-121.643,-107.194,-139.276,0,-126.031	1/1:145:0,145,0:0:0:145,0:5177,0:-466.041,-43.6494,0,-466.041,-43.6494,-466.041	1/1:110:0,110,0:0:0:110,0:3914,0:-352.451,-33.1133,0,-352.451,-33.1133,-352.451	1/2:105:0,42,63:0:0:42,63:1478,2184:-298.179,-177.861,-165.218,-120.667,0,-101.702	1/1:62:0,61,0:0:0:61,0:2188,0:-196.983,-18.3628,0,-196.983,-18.3628,-196.983	1/1:14:0,14,0:0:0:14,0:496,0:-44.9737,-4.21442,0,-44.9737,-4.21442,-44.9737	1/1:120:0,120,0:0:0:120,0:4262,0:-383.756,-36.1236,0,-383.756,-36.1236,-383.756	1/2:84:0,39,45:0:0:39,45:1392,1580:-242.425,-128.941,-117.201,-113.839,0,-100.292	1/2:180:0,79,101:0:0:79,101:2790,3504:-512.38,-285.173,-261.392,-227.558,0,-197.154	1/2:84:0,42,42:0:0:42,42:1508,1459:-241.978,-118.96,-106.316,-123.371,0,-110.728	1/2:95:0,39,55:0:0:39,55:1392,1946:-271.983,-158.5,-146.76,-113.479,0,-96.9224	1/2:57:0,32,25:0:0:32,25:1144,864:-163.834,-70.5478,-60.9149,-93.6366,0,-86.1108	1/2:177:0,91,86:0:0:91,86:3236,2987:-506.894,-243.176,-215.782,-264.069,0,-238.181	1/1:31:0,31,0:0:0:31,0:1100,0:-99.3103,-9.33193,0,-99.3103,-9.33193,-99.3103	1/1:86:0,86,0:0:0:86,0:3076,0:-277.069,-25.8886,0,-277.069,-25.8886,-277.069	1/1:89:0,88,0:0:0:88,0:3156,0:-283.964,-26.4906,0,-283.964,-26.4906,-283.964	1/2:46:0,22,23:0:0:22,23:784,820:-130.793,-66.8871,-60.2644,-63.9493,0,-57.0256	1/2:172:0,80,89:0:0:80,89:2848,3108:-484.936,-252.811,-228.729,-232.13,0,-205.338	1/2:83:0,21,61:0:0:21,61:752,2139:-235.444,-174.116,-167.794,-61.382,0,-43.0192	1/1:116:0,116,0:0:0:116,0:4118,0:-370.804,-34.9195,0,-370.804,-34.9195,-370.804	1/1:118:0,118,0:0:0:118,0:4232,0:-381.059,-35.5215,0,-381.059,-35.5215,-381.059
chr07	12827821	.	T	A	77513.5	PASS	AB=0.479967;ABP=15.7994;AC=127;AF=0.690217;AN=184;AO=3891;CIGAR=1X;DP=5824;DPB=5824;DPRA=16.5;EPP=8391.52;EPPR=4146.34;GTI=1;LEN=1;MEANALT=1.01136;MQM=47.3156;MQMR=59.4182;NS=92;NUMALT=1;ODDS=0.640634;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139425;QR=69149;RO=1932;RPL=7;RPP=8391.52;RPPR=4146.34;RPR=3884;RUN=1;SAF=3891;SAP=8452.21;SAR=0;SRF=1932;SRP=4198.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:24,10:24:851:10:356:-21.6805,0,-66.6744	0/1:103:51,52:51:1820:52:1853:-134.445,0,-133.058	0/1:51:33,18:33:1188:18:648:-42.9631,0,-91.8408	0/1:132:66,66:66:2349:66:2376:-171.617,0,-171.794	1/1:47:0,47:0:0:47:1684:-150.537,-14.1484,0	1/1:39:0,39:0:0:39:1400:-125.632,-11.7402,0	1/1:49:0,49:0:0:49:1758:-156.02,-14.7505,0	0/1:109:49,59:49:1730:59:2104:-155.293,0,-123.186	1/1:40:0,40:0:0:40:1436:-128.599,-12.0412,0	0/1:72:36,36:36:1284:36:1292:-93.4414,0,-94.1621	1/1:23:0,23:0:0:23:828:-74.1957,-6.92369,0	1/1:33:0,33:0:0:33:1188:-105.762,-9.93399,0	0/1:27:12,15:12:432:15:540:-40.5434,0,-31.0934	0/1:22:15,7:15:540:7:252:-16.2473,0,-42.3139	0/1:29:20,9:20:720:9:324:-20.1738,0,-56.3989	1/1:36:0,36:0:0:36:1296:-115.894,-10.8371,0	1/1:31:0,31:0:0:31:1101:-98.5273,-9.33193,0	1/1:21:0,21:0:0:21:756:-68.0004,-6.32163,0	0/1:23:7,16:7:252:16:576:-44.6824,0,-16.0826	0/1:120:76,44:76:2719:44:1584:-105.137,0,-208.637	1/1:67:0,67:0:0:67:2412:-214.797,-20.169,0	0/1:105:70,35:70:2512:35:1241:-78.973,0,-194.647	1/1:62:0,62:0:0:62:2186:-195.035,-18.6639,0	0/1:109:51,58:51:1832:58:2086:-153.075,0,-132.326	0/1:47:20,27:20:720:27:972:-73.0434,0,-50.9804	0/1:302:157,145:157:5637:145:5201:-372.068,0,-416.079	1/1:107:0,107:0:0:107:3840:-342.549,-32.2102,0	1/1:20:0,20:0:0:20:720:-64.3878,-6.0206,0	0/1:114:46,68:46:1622:68:2410:-180.996,0,-111.91	1/1:109:3,106:3:108:106:3793:-329.136,-22.7371,0	1/1:86:0,86:0:0:86:3080:-274.002,-25.8886,0	0/1:10:5,5:5:180:5:180:-13.4275,0,-13.4961	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.3783,-1.80618,0	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.2281	0/1:124:63,61:63:2264:61:2192:-157.237,0,-166.666	0/1:183:91,92:91:3240:92:3292:-238.38,0,-236.641	0/1:21:9,12:9:324:12:432:-32.6761,0,-23.1842	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:106:50,56:50:1762:56:2016:-148.583,0,-126.872	0/1:8:2,6:2:72:6:216:-17.2456,0,-4.42848	0/1:120:62,58:62:2217:58:2054:-146.643,0,-163.602	0/1:33:17,16:17:612:16:572:-41.3287,0,-45.4794	0/1:49:21,28:21:756:28:1008:-75.4899,0,-53.5883	1/1:69:0,69:0:0:69:2480:-220.487,-20.7711,0	1/1:82:0,82:0:0:82:2921:-261.246,-24.6845,0	0/1:189:92,97:92:3293:97:3475:-251.054,0,-239.503	1/1:97:0,97:0:0:97:3480:-308.755,-29.1999,0	0/1:72:33,39:33:1180:39:1391:-102.453,0,-84.7709	0/1:158:89,69:89:3196:69:2472:-171.555,0,-239.81	0/1:4:1,3:1:36:3:108:-8.78295,0,-2.39415	0/1:109:52,57:52:1864:57:2052:-151.144,0,-135.184	1/1:10:0,10:0:0:10:356:-32.1119,-3.0103,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:67:33,34:33:1180:34:1224:-89.2486,0,-86.2942	0/1:17:14,3:14:504:3:108:-4.86956,0,-40.5806	0/1:5:2,3:2:72:3:108:-8.48192,0,-5.33157	1/1:10:0,10:0:0:10:345:-31.1059,-3.0103,0	1/1:24:0,24:0:0:24:864:-77.2765,-7.22472,0	1/1:71:0,71:0:0:71:2544:-226.753,-21.3731,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:138:0,138:0:0:138:4937:-439.377,-41.5421,0	1/1:152:3,149:3:108:149:5346:-464.905,-35.6814,0	0/1:77:38,39:38:1364:39:1400:-102.264,0,-99.8232	1/1:41:0,41:0:0:41:1461:-130.682,-12.3422,0	0/1:116:71,45:71:2548:45:1605:-108.277,0,-194.578	0/1:92:65,27:65:2340:27:972:-58.3762,0,-182.95	1/1:4:0,4:0:0:4:144:-13.2266,-1.20412,0	1/1:49:0,49:0:0:49:1756:-157.197,-14.7505,0	0/1:70:38,32:38:1368:32:1148:-80.6733,0,-102.214	0/1:18:12,6:12:428:6:216:-14.1989,0,-33.4117	1/1:62:0,62:0:0:62:2224:-196.573,-18.6639,0	0/1:48:23,25:23:824:25:900:-65.486,0,-60.0339	1/1:64:0,64:0:0:64:2300:-205.85,-19.2659,0	1/1:74:0,74:0:0:74:2633:-235.227,-22.2762,0	0/1:71:36,35:36:1269:35:1252:-90.554,0,-93.12	1/1:101:3,98:3:108:98:3505:-303.106,-20.3289,0	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	1/1:87:0,87:0:0:87:3128:-279.404,-26.1896,0	0/1:53:35,18:35:1252:18:637:-41.0336,0,-97.0161	0/1:162:73,89:73:2616:89:3198:-236.192,0,-186.864	0/1:89:47,42:47:1688:42:1508:-107.748,0,-125.402	0/1:28:13,15:13:464:15:540:-40.0798,0,-33.6399	0/1:33:20,13:20:720:13:468:-32.1652,0,-55.1948	0/1:73:32,41:32:1152:41:1472:-109.688,0,-81.9865	1/1:43:0,43:0:0:43:1548:-138.577,-12.9443,0	1/1:47:0,47:0:0:47:1692:-150.941,-14.1484,0	1/1:36:0,36:0:0:36:1296:-116.129,-10.8371,0	0/1:8:4,4:4:144:4:144:-10.8255,0,-10.9054	0/1:27:12,15:12:432:15:540:-39.9422,0,-31.0934	0/1:30:19,11:19:684:11:396:-26.2925,0,-52.8594	1/1:52:0,52:0:0:52:1868:-166.511,-15.6536,0	1/1:48:0,48:0:0:48:1720:-152.818,-14.4494,0
chr07	12828016	.	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chr07	14138158	.	T	G	136638	PASS	AB=0.536949;ABP=67.5174;AC=131;AF=0.696809;AN=188;AO=6727;CIGAR=1X;DP=9264;DPB=9264;DPRA=50.3261;EPP=14593.1;EPPR=5451.36;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.9875;MQMR=59.9972;NS=94;NUMALT=1;ODDS=0.919374;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238739;QR=90537;RO=2533;RPL=6725;RPP=14593.1;RPPR=5451.36;RPR=2;RUN=1;SAF=6727;SAP=14610.5;SAR=0;SRF=2533;SRP=5503.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:18,27:18:635:27:963:-73.0799,0,-43.5712	0/1:98:43,54:43:1544:54:1894:-141.175,0,-109.693	0/1:135:63,72:63:2256:72:2562:-190.192,0,-162.664	0/1:229:110,119:110:3917:119:4220:-311.046,0,-283.787	1/1:79:1,78:1:36:78:2788:-247.563,-20.1831,0	1/1:74:1,73:1:36:73:2608:-231.37,-18.6779,0	1/1:146:0,146:0:0:146:5169:-465.355,-43.9504,0	0/1:95:45,50:45:1608:50:1774:-131.344,0,-116.412	1/1:150:0,150:0:0:150:5337:-480.465,-45.1545,0	0/1:88:38,50:38:1343:50:1773:-133.359,0,-94.6787	1/1:49:1,48:1:36:48:1705:-150.137,-11.1522,0	1/1:42:0,42:0:0:42:1438:-129.709,-12.6433,0	0/1:38:24,14:24:864:14:491:-33.082,0,-66.6434	0/1:52:27,25:27:968:25:883:-64.1339,0,-71.7838	0/1:28:11,17:11:388:17:600:-45.9004,0,-26.8285	1/1:28:0,28:0:0:28:995:-89.864,-8.42884,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:40:0,40:0:0:40:1400:-126.295,-12.0412,0	0/1:33:16,17:16:568:17:575:-42.1337,0,-41.5179	0/1:178:75,103:75:2684:103:3671:-277.011,0,-188.222	1/1:250:0,250:0:0:250:8919:-802.676,-75.2575,0	0/1:135:97,38:97:3468:38:1356:-81.7014,0,-271.693	1/1:92:0,92:0:0:92:3286:-295.959,-27.6948,0	0/1:156:65,91:65:2324:91:3243:-245.131,0,-162.46	0/1:92:32,60:32:1148:60:2148:-165.893,0,-75.9351	0/1:320:143,177:143:5098:177:6293:-470.135,0,-362.635	1/1:198:1,197:1:36:197:6997:-626.198,-56.0057,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:291:128,163:128:4564:163:5789:-433.528,0,-323.325	1/1:128:2,126:2:72:126:4473:-395.906,-31.6951,0	1/1:96:4,92:4:144:92:3248:-279.228,-15.5853,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:17:5,12:5:180:12:424:-33.3789,0,-11.4346	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:10:4,6:4:135:6:216:-16.7802,0,-9.47221	0/1:120:63,57:63:2247:57:1992:-143.426,0,-166.369	0/1:226:99,127:99:3543:127:4506:-337.678,0,-251.045	0/1:39:22,17:22:788:17:575:-40.3267,0,-59.5046	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:164:80,84:80:2864:84:2973:-218.434,0,-208.628	0/1:17:8,9:8:279:9:324:-24.3883,0,-20.33	0/1:242:71,171:71:2536:171:6080:-474.456,0,-155.642	0/1:70:34,36:34:1220:36:1275:-93.9802,0,-89.0347	0/1:53:18,35:18:648:35:1205:-92.7933,0,-42.6973	1/1:236:1,235:1:36:235:8355:-748.36,-67.4448,0	1/1:98:0,98:0:0:98:3492:-314.492,-29.5009,0	0/1:228:103,125:103:3652:125:4430:-330.24,0,-260.249	1/1:129:0,129:0:0:129:4611:-415.126,-38.8329,0	0/1:132:52,80:52:1872:80:2848:-216.822,0,-129.023	0/1:238:118,120:118:4211:120:4249:-310.943,0,-307.526	0/1:17:7,10:7:252:10:325:-24.447,0,-17.9114	0/1:120:50,70:50:1792:70:2493:-188.499,0,-125.439	1/1:66:0,66:0:0:66:2352:-211.939,-19.868,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:149:61,88:61:2192:88:3133:-237.314,0,-152.692	0/1:58:20,38:20:720:38:1352:-104.521,0,-47.669	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:80:0,80:0:0:80:2836:-255.478,-24.0824,0	1/1:126:0,126:0:0:126:4462:-401.752,-37.9298,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:191:0,191:0:0:191:6790:-611.162,-57.4967,0	1/1:255:1,254:1:36:254:9038:-809.805,-73.1644,0	0/1:81:38,43:38:1360:43:1527:-113.339,0,-98.3172	1/1:87:0,87:0:0:87:3071:-276.612,-26.1896,0	0/1:308:158,150:158:5668:150:5351:-389.007,0,-417.521	0/1:107:59,48:59:2116:48:1715:-122.425,0,-158.499	1/1:10:0,10:0:0:10:326:-29.6543,-3.0103,0	1/1:87:0,87:0:0:87:3111:-280.217,-26.1896,0	0/1:65:25,40:25:888:40:1418:-108.35,0,-60.6721	0/1:30:15,15:15:540:15:532:-39.1822,0,-39.9056	1/1:140:1,139:1:36:139:4963:-443.222,-38.5459,0	0/1:55:28,27:28:1008:27:959:-70.0687,0,-74.4797	1/1:131:0,131:0:0:131:4652:-418.844,-39.4349,0	1/1:159:0,159:0:0:159:5666:-510.061,-47.8638,0	0/1:78:45,33:45:1603:33:1171:-82.2163,0,-121.079	1/1:95:0,95:0:0:95:3334:-300.277,-28.5979,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:119:0,119:0:0:119:4217:-379.713,-35.8226,0	0/1:93:52,41:52:1864:41:1460:-103.7,0,-140.044	0/1:206:101,105:101:3620:105:3715:-272.541,0,-263.993	0/1:82:40,42:40:1436:42:1488:-109.53,0,-104.853	0/1:28:8,20:8:284:20:712:-55.9778,0,-17.4745	0/1:49:25,24:25:887:24:864:-63.3321,0,-65.3973	0/1:133:53,80:53:1900:80:2838:-215.622,0,-131.241	1/1:32:0,32:0:0:32:1100:-99.3006,-9.63296,0	1/1:66:1,65:1:36:65:2310:-204.562,-16.2697,0	1/1:72:0,72:0:0:72:2516:-226.69,-21.6742,0	0/1:42:18,24:18:648:24:840:-63.2749,0,-46.0086	0/1:72:45,26:45:1604:26:918:-61.2026,0,-122.917	0/1:68:44,23:44:1559:23:815:-53.1513,0,-120.082	1/1:123:0,123:0:0:123:4411:-397.162,-37.0267,0	1/1:65:0,65:0:0:65:2257:-203.39,-19.567,0
chr07	14153675	.	T	G	87023.1	PASS	AB=0.543458;ABP=55.2898;AC=134;AF=0.712766;AN=188;AO=4247;CIGAR=1X;DP=5713;DPB=5713;DPRA=0;EPP=9225.25;EPPR=3186.39;GTI=2;LEN=1;MEANALT=1;MQM=59.9694;MQMR=54.3547;NS=94;NUMALT=1;ODDS=2.1121;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150885;QR=52414;RO=1466;RPL=0;RPP=9225.25;RPPR=3186.39;RPR=4247;RUN=1;SAF=0;SAP=9225.25;SAR=4247;SRF=0;SRP=3186.39;SRR=1466;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:6,15:6:212:15:516:-40.4418,0,-12.9675	0/1:79:40,39:40:1440:39:1387:-101.347,0,-105.578	0/1:110:51,59:51:1832:59:2116:-157.595,0,-131.261	0/1:119:47,72:47:1684:72:2576:-196.249,0,-115.714	1/1:49:0,49:0:0:49:1745:-157.332,-14.7505,0	0/1:33:4,29:4:144:29:1010:-81.273,0,-3.34616	1/1:85:0,85:0:0:85:3016:-271.67,-25.5876,0	0/1:60:29,31:29:1040:31:1092:-80.5256,0,-75.5588	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:40:19,21:19:660:21:728:-53.7965,0,-47.6391	1/1:52:0,52:0:0:52:1835:-165.43,-15.6536,0	1/1:52:0,52:0:0:52:1860:-167.671,-15.6536,0	0/1:23:13,10:13:468:10:352:-25.0945,0,-35.4292	0/1:45:21,24:21:741:24:848:-63.0927,0,-53.3667	0/1:32:16,16:16:576:16:576:-42.542,0,-42.4201	1/1:56:0,56:0:0:56:2002:-180.454,-16.8577,0	1/1:27:0,27:0:0:27:956:-86.3557,-8.12781,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:28:15,13:15:540:13:464:-33.6687,0,-40.3752	0/1:59:18,41:18:648:41:1468:-114.655,0,-40.8488	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	0/1:62:38,24:38:1364:24:852:-58.3365,0,-104.309	1/1:43:1,42:1:36:42:1500:-131.696,-9.34861,0	0/1:39:20,19:20:720:19:680:-49.789,0,-53.3009	0/1:60:26,34:26:936:34:1207:-90.8735,0,-66.2488	0/1:150:64,86:64:2284:86:3076:-231.914,0,-160.495	1/1:203:0,203:0:0:203:7214:-649.316,-61.1091,0	1/1:22:0,22:0:0:22:765:-69.1677,-6.62266,0	0/1:182:79,103:79:2832:103:3687:-277.245,0,-200.162	1/1:111:0,111:0:0:111:3927:-353.623,-33.4143,0	1/1:66:1,65:1:36:65:2278:-201.681,-16.2723,0	0/1:16:6,10:6:216:10:330:-25.2009,0,-14.8188	1/1:31:0,31:0:0:31:1101:-99.3984,-9.33193,0	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.1727	0/1:37:18,19:18:629:19:680:-50.3911,0,-45.6555	0/1:105:48,57:48:1720:57:2036:-151.904,0,-123.324	0/1:102:39,63:39:1400:63:2252:-172.21,0,-95.3725	0/1:47:23,24:23:815:24:864:-63.9342,0,-59.3406	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.55573	0/1:80:36,44:36:1277:44:1572:-117.689,0,-90.6419	0/1:29:16,13:16:572:13:460:-33.0055,0,-43.0123	0/1:85:47,38:47:1676:38:1336:-94.9502,0,-125.204	0/1:34:18,16:18:644:16:553:-39.859,0,-47.844	0/1:28:16,12:16:576:12:417:-29.4314,0,-43.6089	1/1:45:0,45:0:0:45:1593:-143.657,-13.5464,0	1/1:114:2,112:2:72:112:3950:-348.863,-27.4893,0	0/1:94:32,62:32:1144:62:2183:-168.437,0,-73.9531	1/1:50:0,50:0:0:50:1765:-159.131,-15.0515,0	0/1:74:30,44:30:1080:44:1546:-117.154,0,-75.1667	0/1:77:42,35:42:1497:35:1248:-89.445,0,-111.204	0/1:19:6,13:6:201:13:468:-36.7401,0,-12.6855	0/1:98:50,48:50:1781:48:1716:-125.221,0,-130.669	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:17:12,5:12:432:5:180:-11.4346,0,-33.9995	0/1:88:31,57:31:1093:57:2022:-155.761,0,-71.8308	0/1:41:25,16:25:884:16:561:-38.4725,0,-67.4786	1/1:12:1,11:1:36:11:396:-32.3855,-0.0150909,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:73:1,72:1:36:72:2565:-227.499,-18.3769,0	1/1:88:1,87:1:36:87:3088:-274.548,-22.895,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69259	1/1:127:0,127:0:0:127:4532:-408.047,-38.2308,0	1/1:161:2,159:2:72:159:5690:-505.385,-41.634,0	0/1:69:43,26:43:1544:26:932:-63.4278,0,-118.134	1/1:81:0,81:0:0:81:2893:-260.602,-24.3834,0	0/1:59:15,44:15:536:44:1567:-123.56,0,-30.7743	0/1:92:58,34:58:2084:34:1214:-81.8718,0,-159.827	1/1:23:2,21:2:72:21:744:-60.4525,-0.0918149,0	1/1:34:0,34:0:0:34:1198:-108.124,-10.235,0	0/1:43:18,25:18:648:25:887:-67.2038,0,-45.6285	0/1:18:7,11:7:252:11:377:-28.8394,0,-17.5938	1/1:101:0,101:0:0:101:3585:-322.855,-30.404,0	0/1:39:18,21:18:648:21:737:-54.9105,0,-46.744	1/1:105:0,105:0:0:105:3710:-334.097,-31.6082,0	1/1:121:0,121:0:0:121:4300:-387.176,-36.4246,0	0/1:120:38,82:38:1368:82:2940:-228.71,0,-86.3164	1/1:62:0,62:0:0:62:2208:-198.985,-18.6639,0	1/1:28:0,28:0:0:28:989:-89.322,-8.42884,0	1/1:91:0,91:0:0:91:3214:-289.482,-27.3937,0	0/1:42:9,33:9:309:33:1179:-93.774,0,-15.4395	0/1:82:34,48:34:1224:48:1728:-131.121,0,-85.6093	0/1:55:26,29:26:928:29:1025:-76.004,0,-67.1036	0/1:37:23,14:23:819:14:496:-33.8362,0,-62.7574	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3648	0/1:83:43,40:43:1544:40:1424:-103.472,0,-113.735	1/1:20:0,20:0:0:20:703:-63.5935,-6.0206,0	1/1:49:0,49:0:0:49:1739:-156.794,-14.7505,0	1/1:54:0,54:0:0:54:1931:-174.066,-16.2556,0	0/1:35:13,22:13:440:22:777:-59.7143,0,-29.1037	0/1:126:76,50:76:2732:50:1781:-122.641,0,-207.71	0/1:30:9,21:9:320:21:743:-58.1624,0,-20.0916	1/1:72:0,72:0:0:72:2531:-228.038,-21.6742,0	1/1:45:0,45:0:0:45:1600:-144.279,-13.5464,0
chr07	14153684	.	T	C	22939.1	PASS	AB=0.455181;ABP=57.9004;AC=54;AF=0.287234;AN=188;AO=1439;CIGAR=1X;DP=5636;DPB=5636;DPRA=0.949106;EPP=3127.76;EPPR=9114.51;GTI=2;LEN=1;MEANALT=1;MQM=54.4114;MQMR=59.9726;NS=94;NUMALT=1;ODDS=1.47777;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51464;QR=149968;RO=4196;RPL=0;RPP=3127.76;RPPR=9114.51;RPR=1439;RUN=1;SAF=0;SAP=3127.76;SAR=1439;SRF=0;SRP=9114.51;SRR=4196;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:15,5:15:540:5:180:-10.4842,0,-42.9159	0/1:76:38,38:38:1356:38:1368:-100.026,0,-99.4622	0/1:108:59,49:59:2108:49:1744:-123.993,0,-157.478	0/1:115:72,43:72:2584:43:1540:-103.925,0,-198.173	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:33:29,4:29:1027:4:140:-2.98212,0,-82.8082	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:58:31,27:31:1116:27:968:-69.7618,0,-83.2886	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:39:20,19:20:712:19:684:-50.1055,0,-52.6665	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.554	0/1:22:9,13:9:324:13:468:-35.7302,0,-22.8832	0/1:44:24,20:24:864:20:716:-51.4268,0,-64.8372	0/1:32:16,16:16:576:16:564:-41.388,0,-42.542	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:29:14,15:14:504:15:540:-40.0742,0,-36.9682	0/1:60:41,19:41:1453:19:680:-43.4241,0,-113.002	0/0:61:60,0:60:2148:0:0:0,-18.0618,-193.228	0/1:62:25,37:25:900:37:1328:-101.093,0,-62.6572	0/0:40:39,1:39:1388:1:36:0,-8.44552,-121.623	0/1:40:21,19:21:744:19:680:-49.403,0,-55.2431	0/1:61:35,26:35:1260:26:917:-64.2423,0,-95.3365	0/1:148:85,63:85:3025:63:2264:-159.294,0,-227.927	0/0:202:202,0:202:7209:0:0:0,-60.8081,-648.864	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:181:102,79:102:3621:79:2827:-200.015,0,-271.61	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.026	0/0:65:64,1:64:2281:1:36:0,-15.9713,-201.955	0/1:16:10,6:10:356:6:216:-14.8188,0,-27.5648	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:19:8,11:8:288:11:396:-30.1727,0,-20.5478	0/1:37:19,18:19:684:18:644:-47.0043,0,-50.7522	0/1:106:56,50:56:2008:50:1784:-128.803,0,-149.084	0/1:99:61,38:61:2192:38:1360:-92.6843,0,-167.715	0/1:45:23,22:23:824:22:779:-56.7177,0,-60.937	0/1:5:2,3:2:72:3:108:-8.55573,0,-5.33157	0/1:80:44,36:44:1584:36:1277:-90.7119,0,-118.769	0/1:28:13,15:13:468:15:540:-40.4383,0,-34.0308	0/1:84:37,47:37:1305:47:1688:-126.575,0,-92.4629	0/1:33:15,18:15:540:18:644:-48.145,0,-39.0025	0/1:26:12,14:12:424:14:504:-37.8384,0,-30.6696	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.892	0/0:112:112,0:112:4001:0:0:0,-33.7154,-360.278	0/1:89:60,29:60:2133:29:1034:-66.3786,0,-165.445	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:73:43,30:43:1548:30:1080:-75.4677,0,-117.638	0/1:75:33,42:33:1176:42:1508:-112.797,0,-83.5705	0/1:19:13,6:13:468:6:207:-13.2351,0,-36.7401	0/1:99:49,50:49:1748:50:1796:-131.712,0,-127.799	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:17:5,12:5:176:12:432:-33.9995,0,-11.0675	0/1:86:57,29:57:2033:29:1040:-67.6496,0,-157.352	0/1:42:15,27:15:525:27:972:-75.0868,0,-34.9348	0/0:12:11,1:11:396:1:36:0,-0.0150907,-32.3855	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:72:72,0:72:2564:0:0:0,-21.6742,-231.005	0/0:84:83,1:83:2956:1:36:0,-21.6908,-262.673	0/1:2:1,1:1:36:1:36:-2.99362,0,-2.99621	0/0:125:125,0:125:4412:0:0:0,-37.6287,-397.251	0/0:159:157,2:157:5636:2:72:0,-41.032,-500.527	0/1:71:27,44:27:972:44:1576:-120.479,0,-66.355	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/1:57:42,15:42:1512:15:531:-30.9292,0,-119.216	0/1:89:34,55:34:1216:55:1980:-151.378,0,-82.9549	0/0:23:22,1:22:792:1:36:0,-3.33052,-68.0125	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:43:24,19:24:864:19:671:-47.6929,0,-65.1383	0/1:16:9,7:9:324:7:237:-16.8283,0,-24.6894	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/1:38:20,18:20:720:18:648:-47.045,0,-53.6896	0/0:103:103,0:103:3647:0:0:0,-31.0061,-328.428	0/0:121:121,0:121:4333:0:0:0,-36.4246,-390.143	0/1:117:79,38:79:2825:38:1346:-85.4586,0,-219.267	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:90:90,0:90:3221:0:0:0,-27.0927,-290.11	0/1:43:35,8:35:1260:8:288:-13.2571,0,-100.761	0/1:83:49,34:49:1764:34:1220:-84.9494,0,-134.054	0/1:53:27,26:27:968:26:919:-66.9197,0,-71.4828	0/1:37:14,23:14:489:23:828:-63.5679,0,-33.2008	0/1:17:8,9:8:284:9:320:-23.9965,0,-20.7858	0/1:83:41,42:41:1476:42:1504:-110.455,0,-108.151	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/1:36:23,13:23:820:13:464:-30.2085,0,-63.2854	0/1:125:49,76:49:1760:76:2703:-205.422,0,-121.055	0/1:30:21,9:21:741:9:324:-20.4537,0,-57.9807	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533
chr07	14153693	.	T	G	23087.8	PASS	AB=0.458189;ABP=51.1301;AC=55;AF=0.292553;AN=188;AO=1458;CIGAR=1X;DP=5623;DPB=5623;DPRA=0.961567;EPP=3151.67;EPPR=8917.31;GTI=3;LEN=1;MEANALT=1.03333;MQM=54.3745;MQMR=59.9664;NS=94;NUMALT=1;ODDS=1.564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51709;QR=148636;RO=4161;RPL=2;RPP=3151.67;RPPR=8917.31;RPR=1456;RUN=1;SAF=0;SAP=3169.02;SAR=1458;SRF=0;SRP=9038.51;SRR=4161;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:16,5:16:572:5:180:-10.1831,0,-45.4918	0/1:77:37,40:37:1324:40:1402:-102.895,0,-96.2828	0/1:109:58,51:58:2072:51:1810:-129.718,0,-153.938	0/1:119:73,46:73:2624:46:1643:-111.979,0,-200.584	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:31:27,4:27:960:4:140:-3.58418,0,-77.3843	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.036	0/1:61:31,30:31:1101:30:1059:-77.0082,0,-81.0355	0/0:30:30,0:30:1057:0:0:0,-9.0309,-95.439	0/1:41:22,19:22:792:19:667:-47.9726,0,-59.2634	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:52:51,0:51:1821:0:0:0,-15.3525,-163.81	0/1:23:10,13:10:356:13:459:-34.6208,0,-25.4576	0/1:44:23,21:23:824:21:756:-55.0189,0,-61.238	0/1:32:16,16:16:567:16:572:-42.06,0,-41.7278	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:28:13,15:13:468:15:540:-40.3752,0,-34.0308	0/1:57:38,19:38:1368:19:658:-42.3448,0,-106.262	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/1:63:25,38:25:892:38:1334:-101.328,0,-61.6348	0/0:39:38,1:38:1364:1:36:0,-8.14449,-119.465	0/1:39:20,19:20:720:19:680:-49.704,0,-53.3886	0/1:60:34,26:34:1220:26:898:-62.8435,0,-92.0388	0/1:150:85,64:85:3048:64:2271:-159.341,0,-229.336	0/0:200:200,0:200:7142:0:0:0,-60.206,-642.837	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:179:100,79:100:3557:79:2808:-198.913,0,-266.454	0/0:108:108,0:108:3827:0:0:0,-32.5112,-344.62	0/0:64:63,1:63:2264:1:36:0,-15.6702,-200.427	0/1:16:10,6:10:341:6:205:-13.9315,0,-26.2013	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:19:8,11:8:288:11:392:-29.8149,0,-20.5478	0/1:36:18,18:18:644:18:640:-46.9523,0,-47.4535	0/1:104:57,47:57:2040:47:1673:-119.458,0,-152.565	0/1:97:58,37:58:2072:37:1328:-90.649,0,-157.795	0/1:46:24,22:24:864:22:788:-57.2223,0,-64.2352	0/1:5:2,3:2:72:3:104:-8.18622,0,-5.33157	0/1:79:44,35:44:1580:35:1231:-86.9348,0,-118.71	0/1:29:13,16:13:468:16:576:-43.3711,0,-33.7298	0/1:85:38,47:38:1337:47:1671:-124.753,0,-95.0404	0/1:33:15,18:15:540:18:643:-48.0724,0,-39.0025	0/1:29:13,16:13:464:16:576:-43.3079,0,-33.3676	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.54	0/0:110:110,0:110:3922:0:0:0,-33.1133,-353.17	0/1:90:58,32:58:2072:32:1112:-72.9484,0,-159.658	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.123	0/1:74:44,30:44:1572:30:1072:-74.4487,0,-119.495	0/1:74:33,41:33:1188:41:1464:-109.663,0,-84.9524	0/1:19:13,6:13:468:6:208:-13.3281,0,-36.7401	0/1:98:49,49:49:1760:49:1731:-126.204,0,-129.175	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:17:5,12:5:180:12:428:-33.642,0,-11.4346	0/1:89:58,31:58:2065:31:1100:-72.1613,0,-159.328	0/1:43:16,27:16:553:27:955:-73.2609,0,-37.1488	0/1:11:10,1:10:360:1:36:-0.285939,0,-29.433	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:70:70,0:70:2478:0:0:0,-21.0721,-223.257	0/0:87:86,1:86:3092:1:36:0,-22.5939,-274.206	0/1:3:2,1:2:68:1:36:-2.69259,0,-5.55462	0/0:128:128,0:128:4554:0:0:0,-38.5318,-410.021	0/0:157:155,2:155:5486:2:72:0,-40.4299,-487.039	0/1:70:26,44:26:932:44:1576:-120.71,0,-63.0569	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.646	0/1:55:41,14:41:1476:14:500:-28.748,0,-116.58	0/1:93:34,59:34:1220:59:2081:-159.261,0,-82.111	0/0:22:21,1:21:752:1:36:0,-3.02949,-64.4131	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/1:42:23,19:23:824:19:680:-48.8065,0,-61.8401	0/1:16:9,7:9:324:7:252:-18.1959,0,-24.6894	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.805	0/1:38:20,18:20:720:18:640:-46.3322,0,-53.6896	0/0:105:105,0:105:3736:0:0:0,-31.6081,-336.438	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.134	0/1:119:80,39:80:2863:39:1392:-88.9675,0,-222.084	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2452	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/1:43:36,7:36:1292:7:252:-10.0268,0,-103.639	0/1:82:48,34:48:1720:34:1204:-83.8186,0,-130.396	0/1:54:28,26:28:1000:26:904:-65.2731,0,-74.0598	0/1:36:13,23:13:468:23:828:-63.869,0,-31.6226	0/1:18:8,10:8:288:10:356:-26.9228,0,-20.8489	0/1:82:40,42:40:1436:42:1496:-110.039,0,-104.853	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:36:23,13:23:815:13:464:-30.1381,0,-62.8337	0/1:125:48,77:48:1719:77:2713:-206.318,0,-117.366	0/1:30:21,9:21:756:9:309:-19.0908,0,-59.3363	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.76
chr07	14153702	.	C	T	23489.7	PASS	AB=0.453018;ABP=64.6304;AC=54;AF=0.287234;AN=188;AO=1465;CIGAR=1X;DP=5746;DPB=5746;DPRA=0.982445;EPP=3166.87;EPPR=9221.08;GTI=2;LEN=1;MEANALT=1;MQM=54.3597;MQMR=59.964;NS=94;NUMALT=1;ODDS=2.33578;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52480;QR=152784;RO=4281;RPL=1463;RPP=3166.87;RPPR=9221.08;RPR=2;RUN=1;SAF=0;SAP=3184.22;SAR=1465;SRF=0;SRP=9299.08;SRR=4281;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:16,6:16:572:6:216:-12.9276,0,-45.1908	0/1:79:39,40:39:1396:40:1421:-103.878,0,-102.158	0/1:110:59,51:59:2105:51:1836:-131.616,0,-156.604	0/1:121:74,47:74:2649:47:1665:-113.423,0,-202.212	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:33:29,4:29:1040:4:129:-1.9683,0,-83.9804	0/0:85:85,0:85:3029:0:0:0,-25.5875,-272.839	0/1:60:32,28:32:1137:28:1008:-72.684,0,-84.5718	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:39:21,18:21:752:18:648:-46.8694,0,-56.2661	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.153	0/1:23:10,13:10:360:13:468:-35.4292,0,-25.8206	0/1:45:24,21:24:849:21:756:-54.7179,0,-63.1815	0/1:32:16,16:16:576:16:572:-42.06,0,-42.542	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:29:14,15:14:504:15:540:-40.0742,0,-36.9682	0/1:60:41,19:41:1472:19:684:-43.7839,0,-114.714	0/0:59:59,0:59:2090:0:0:0,-17.7608,-188.366	0/1:63:25,38:25:885:38:1349:-102.656,0,-61.0016	0/0:43:42,1:42:1493:1:36:0,-9.34861,-131.066	0/1:40:21,19:21:737:19:684:-49.7614,0,-54.6094	0/1:59:33,26:33:1184:26:932:-66.192,0,-89.1075	0/1:153:89,64:89:3192:64:2289:-160.036,0,-241.446	0/0:206:206,0:206:7339:0:0:0,-62.0122,-660.557	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:182:102,80:102:3649:80:2872:-203.763,0,-273.825	0/0:113:113,0:113:4013:0:0:0,-34.0164,-361.353	0/0:67:66,1:66:2338:1:36:0,-16.5733,-207.081	0/1:16:10,6:10:360:6:216:-14.8188,0,-27.9278	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:19:8,11:8:288:11:396:-30.1727,0,-20.5478	0/1:38:20,18:20:720:18:633:-45.7162,0,-53.6896	0/1:106:57,49:57:2048:49:1756:-126.271,0,-152.682	0/1:103:64,39:64:2281:39:1385:-93.729,0,-174.516	0/1:46:24,22:24:864:22:792:-57.5727,0,-64.2352	0/1:5:2,3:2:72:3:108:-8.55573,0,-5.33157	0/1:82:46,36:46:1641:36:1281:-90.6108,0,-123.292	0/1:29:13,16:13:468:16:576:-43.3711,0,-33.7298	0/1:85:38,47:38:1349:47:1688:-126.274,0,-96.1207	0/1:34:16,18:16:561:18:648:-48.2039,0,-40.5821	0/1:29:13,16:13:453:16:576:-43.3079,0,-32.3698	0/0:43:42,1:42:1482:1:36:0,-9.34601,-130.071	0/0:114:113,1:113:4030:1:36:0,-30.7282,-359.296	0/1:95:63,32:63:2226:32:1152:-74.3699,0,-172.003	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:73:43,30:43:1548:30:1080:-75.4677,0,-117.638	0/1:78:36,42:36:1251:42:1512:-112.743,0,-89.4056	0/1:19:13,6:13:468:6:216:-14.0567,0,-36.7401	0/1:99:50,49:50:1777:49:1760:-128.481,0,-130.409	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/1:18:6,12:6:216:12:432:-33.6984,0,-14.372	0/1:87:58,29:58:2073:29:1044:-67.7847,0,-160.649	0/1:43:16,27:16:576:27:972:-74.7858,0,-39.2283	0/0:12:11,1:11:396:1:36:0,-0.0150907,-32.3855	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:72:72,0:72:2583:0:0:0,-21.6742,-232.716	0/0:88:87,1:87:3120:1:36:0,-22.895,-277.425	0/1:3:2,1:2:68:1:36:-2.69259,0,-5.55462	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.603	0/0:163:161,2:161:5742:2:72:0,-42.2361,-510.063	0/1:72:28,44:28:993:44:1569:-119.475,0,-68.0059	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.438	0/1:59:44,15:44:1565:15:540:-31.1346,0,-123.379	0/1:94:35,59:35:1241:59:2116:-162.101,0,-83.6957	0/0:23:22,1:22:792:1:36:0,-3.33052,-68.0125	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:45:26,19:26:921:19:680:-47.9034,0,-69.6589	0/1:18:11,7:11:392:7:228:-15.4068,0,-30.2015	0/0:103:103,0:103:3666:0:0:0,-31.0061,-330.138	0/1:39:21,18:21:737:18:640:-46.0312,0,-54.9105	0/0:105:105,0:105:3695:0:0:0,-31.6081,-332.748	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/1:123:83,40:83:2961:40:1436:-91.3369,0,-229.695	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.989	0/1:44:36,8:36:1292:8:288:-12.956,0,-103.338	0/1:81:47,34:47:1677:34:1224:-85.9103,0,-126.832	0/1:55:29,26:29:1044:26:936:-67.7737,0,-77.7182	0/1:37:14,23:14:500:23:828:-63.5679,0,-34.1981	0/1:18:8,10:8:273:10:360:-27.2845,0,-19.4816	0/1:81:40,41:40:1417:41:1472:-108.056,0,-103.442	0/0:21:21,0:21:733:0:0:0,-6.32163,-66.2897	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:36:23,13:23:828:13:459:-30.305,0,-64.007	0/1:126:49,77:49:1764:77:2764:-210.587,0,-121.114	0/1:29:21,8:21:756:8:288:-17.5186,0,-59.6374	0/0:73:73,0:73:2605:0:0:0,-21.9752,-234.697	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.062
chr07	14240413	.	GAGCT	AAGCC,AAGCT	136708	PASS	AB=0.567297,0.428995;ABP=109.103,121.116;AC=152,34;AF=0.817204,0.182796;AN=186;AO=5222,1160;CIGAR=1X3M1X,1X4M;DP=6418;DPB=6418.8;DPRA=0,1.31107;EPP=11342.4,2521.92;EPPR=0;GTI=1;LEN=5,1;MEANALT=1.77419,2.32432;MQM=59.9389,59.8681;MQMR=0;NS=93;NUMALT=2;ODDS=1.07748;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=68,0;PQR=0;PRO=0;QA=184225,41337;QR=0;RO=0;RPL=0,0;RPP=11342.4,2521.92;RPPR=0;RPR=5222,1160;RUN=1,1;SAF=5222,1160;SAP=11342.4,2521.92;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28,0:0:0:28,0:1002,0:-90.4959,-8.42884,0,-90.4959,-8.42884,-90.4959	1/2:30:0,17,13:0:0:17,13:575,468:-85.146,-38.5463,-33.4287,-46.9501,0,-43.0367	1/1:69:0,67,0:0:0:67,0:2336,0:-210.204,-20.169,0,-210.204,-20.169,-210.204	1/1:230:0,227,0:0:0:227,0:7993,0:-719.053,-68.3338,0,-719.053,-68.3338,-719.053	1/2:23:0,13,10:0:0:13,10:448,356:-65.7537,-29.3709,-25.4576,-36.7336,0,-33.7233	1/2:7:0,6,1:0:0:6,1:208,36:-20.1922,-3.29724,-1.49106,-17.2529,0,-16.9518	1/2:35:0,21,14:0:0:21,14:736,504:-101.369,-41.4837,-35.162,-60.241,0,-56.0266	1/1:44:0,44,0:0:0:44,0:1529,0:-137.896,-13.2453,0,-137.896,-13.2453,-137.896	1/1:46:0,45,1:0:0:45,1:1571,36:-141.319,-13.5464,0,-138.382,-10.2491,-138.081	1/1:56:0,55,0:0:0:55,0:1939,0:-174.554,-16.5567,0,-174.554,-16.5567,-174.554	1/1:67:0,67,0:0:0:67,0:2380,0:-214.459,-20.169,0,-214.459,-20.169,-214.459	1/1:89:0,89,0:0:0:89,0:3129,0:-281.837,-26.7917,0,-281.837,-26.7917,-281.837	1/2:71:0,32,39:0:0:32,39:1142,1389:-206.668,-113.568,-103.935,-93.4567,0,-81.7165	1/1:63:0,63,0:0:0:63,0:2240,0:-201.864,-18.9649,0,-201.864,-18.9649,-201.864	1/2:70:0,34,36:0:0:34,36:1210,1266:-202.019,-103.402,-93.1665,-98.9715,0,-88.1344	1/1:51:0,51,0:0:0:51,0:1805,0:-162.731,-15.3525,0,-162.731,-15.3525,-162.731	1/1:23:0,23,0:0:0:23,0:816,0:-73.7618,-6.92369,0,-73.7618,-6.92369,-73.7618	1/2:34:0,12,22:0:0:12,22:420,776:-97.4383,-63.267,-59.6546,-34.5217,0,-27.899	1/2:26:0,16,10:0:0:16,10:576,360:-76.7327,-29.734,-24.9175,-47.3585,0,-44.3482	1/2:122:0,93,29:0:0:93,29:3265,1044:-351.265,-85.5449,-57.5491,-266.078,0,-257.348	1/2:139:0,81,57:0:0:81,57:2835,2033:-396.372,-165.72,-141.337,-230.646,0,-213.487	1/2:88:0,29,59:0:0:29,59:1031,2116:-256.966,-172.948,-164.218,-84.3742,0,-66.6134	1/1:72:0,72,0:0:0:72,0:2528,0:-227.772,-21.6742,0,-227.772,-21.6742,-227.772	1/1:31:0,31,0:0:0:31,0:1099,0:-99.2198,-9.33193,0,-99.2198,-9.33193,-99.2198	1/1:58:0,58,0:0:0:58,0:2072,0:-186.751,-17.4597,0,-186.751,-17.4597,-186.751	1/2:155:0,107,47:0:0:107,47:3766,1677:-443.287,-136.707,-104.497,-306.575,0,-292.427	1/1:241:0,240,0:0:0:240,0:8521,0:-766.538,-72.2472,0,-766.538,-72.2472,-766.538	1/1:37:0,37,0:0:0:37,0:1293,0:-116.669,-11.1381,0,-116.669,-11.1381,-116.669	1/2:304:0,164,139:0:0:164,139:5765,4947:-872.516,-403.263,-353.895,-469.336,0,-427.493	1/1:24:0,22,0:0:0:22,0:763,0:-68.6424,-6.62266,0,-68.6424,-6.62266,-68.6424	1/1:63:0,62,0:0:0:62,0:2161,0:-194.396,-18.6639,0,-194.396,-18.6639,-194.396	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	.:.:.:.:.:.:.:.	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:22:0,21,0:0:0:21,0:727,0:-65.3903,-6.32163,0,-65.3903,-6.32163,-65.3903	1/2:199:0,109,89:0:0:109,89:3839,3173:-571.185,-258.642,-225.83,-312.538,0,-285.746	1/1:94:0,93,0:0:0:93,0:3274,0:-288.146,-27.9958,0,-288.146,-27.9958,-288.146	1/2:28:0,20,8:0:0:20,8:708,284:-81.1644,-23.4951,-17.4745,-58.0239,0,-55.6156	1/1:3:0,3,0:0:0:3,0:105,0:-9.79597,-0.90309,0,-9.79597,-0.90309,-9.79597	1/2:67:0,45,22:0:0:45,22:1585,758:-190.959,-61.9115,-48.3652,-129.394,0,-122.771	1/1:50:0,48,0:0:0:48,0:1675,0:-148.511,-14.4494,0,-148.511,-14.4494,-148.511	1/1:83:0,82,0:0:0:82,0:2885,0:-259.53,-24.6845,0,-259.53,-24.6845,-259.53	1/1:48:0,47,0:0:0:47,0:1658,0:-149.167,-14.1484,0,-149.167,-14.1484,-149.167	1/1:47:0,46,0:0:0:46,0:1613,0:-145.148,-13.8474,0,-145.148,-13.8474,-145.148	1/1:82:0,82,0:0:0:82,0:2872,0:-258.72,-24.6845,0,-258.72,-24.6845,-258.72	1/1:75:0,75,0:0:0:75,0:2636,0:-237.487,-22.5773,0,-237.487,-22.5773,-237.487	1/2:119:0,74,45:0:0:74,45:2602,1571:-339.883,-128.08,-105.804,-212.153,0,-198.607	1/2:61:0,41,20:0:0:41,20:1444,720:-176.665,-59.1082,-46.7659,-117.914,0,-111.893	1/2:67:0,34,32:0:0:34,32:1210,1133:-190.95,-92.3324,-82.0974,-98.6601,0,-89.0272	1/2:77:0,60,17:0:0:60,17:2144,612:-225.103,-50.2959,-32.2341,-175.166,0,-170.049	1/1:13:0,13,0:0:0:13,0:458,0:-41.5536,-3.91339,0,-41.5536,-3.91339,-41.5536	1/1:77:0,75,1:0:0:75,1:2638,36:-237.355,-22.5773,0,-234.417,-19.5949,-234.116	1/1:60:0,60,0:0:0:60,0:2123,0:-191.338,-18.0618,0,-191.338,-18.0618,-191.338	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:132:0,132,0:0:0:132,0:4658,0:-419.206,-39.736,0,-419.206,-39.736,-419.206	1/1:22:0,22,0:0:0:22,0:780,0:-70.5225,-6.62266,0,-70.5225,-6.62266,-70.5225	1/1:20:0,20,0:0:0:20,0:710,0:-64.2257,-6.0206,0,-64.2257,-6.0206,-64.2257	1/2:17:0,10,6:0:0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chr07	14240437	.	C	G	18303.8	PASS	AB=0.431647;ABP=110.472;AC=34;AF=0.182796;AN=186;AO=1146;CIGAR=1X;DP=6303;DPB=6303;DPRA=1.20667;EPP=2413.96;EPPR=10974.2;GTI=1;LEN=1;MEANALT=1.10811;MQM=59.863;MQMR=59.9545;NS=93;NUMALT=1;ODDS=0.970483;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40806;QR=183425;RO=5144;RPL=9;RPP=2413.96;RPPR=10974.2;RPR=1137;RUN=1;SAF=1146;SAP=2491.52;SAR=0;SRF=5144;SRP=11173.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:29:16,13:16:576:13:456:-32.6434,0,-43.4451	0/0:67:66,1:66:2329:1:36:0,-16.5707,-206.271	0/0:226:226,0:226:8076:0:0:0,-68.0328,-726.857	0/1:22:13,9:13:468:9:315:-22.0646,0,-35.8354	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/1:34:20,14:20:708:14:500:-35.1012,0,-53.8106	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.962	0/0:45:43,1:43:1539:1:36:0,-9.93196,-135.276	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/0:89:89,0:89:3137:0:0:0,-26.7917,-282.554	0/1:69:31,38:31:1107:38:1368:-102.65,0,-79.1691	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:69:34,35:34:1183:35:1245:-91.5816,0,-86	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:32:11,21:11:392:21:756:-58.7343,0,-25.9871	0/1:26:16,10:16:576:10:360:-24.9175,0,-44.3482	0/1:121:93,28:93:3299:28:993:-53.2579,0,-260.706	0/1:135:81,54:81:2888:54:1944:-134.597,0,-219.518	0/1:87:30,57:30:1071:57:2031:-156.872,0,-70.512	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:57:57,0:57:2017:0:0:0,-17.1587,-181.801	0/1:148:101,46:101:3620:46:1637:-103.006,0,-281.394	0/0:237:237,0:237:8459:0:0:0,-71.3441,-761.315	0/0:36:35,1:35:1247:1:36:0,-7.2388,-108.936	0/1:297:159,138:159:5680:138:4859:-348.058,0,-421.915	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7203	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	.:.:.:.:.:.:.:.	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/1:196:105,90:105:3752:90:3228:-231.72,0,-278.86	0/0:93:92,0:92:3282:0:0:0,-27.6948,-290.886	0/1:28:20,8:20:681:8:273:-16.4713,0,-53.1748	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:65:44,21:44:1572:21:729:-46.3617,0,-122.205	0/0:50:49,0:49:1751:0:0:0,-14.7505,-155.349	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.082	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/0:47:46,0:46:1621:0:0:0,-13.8474,-145.817	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.384	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.757	0/1:116:71,44:71:2535:44:1568:-105.805,0,-193.423	0/1:60:40,20:40:1404:20:720:-47.067,0,-108.595	0/1:66:34,32:34:1205:32:1140:-83.0412,0,-88.8859	0/1:75:58,17:58:2080:17:612:-32.8362,0,-164.893	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:77:77,0:77:2735:0:0:0,-23.1793,-246.393	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:132:131,0:131:4647:0:0:0,-39.4349,-418.034	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4057	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:96:96,0:96:3426:0:0:0,-28.8989,-308.547	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:118:117,0:117:4188:0:0:0,-35.2205,-376.742	0/1:73:40,33:40:1436:33:1154:-82.0956,0,-107.562	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:83:82,0:82:2927:0:0:0,-24.6845,-263.304	0/0:154:153,0:153:5447:0:0:0,-46.0576,-489.997	0/0:79:79,0:79:2796:0:0:0,-23.7814,-251.878	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:91:55,36:55:1968:36:1292:-89.1891,0,-150.001	0/1:44:34,10:34:1220:10:360:-19.499,0,-96.8615	0/0:94:94,0:94:3340:0:0:0,-28.2968,-300.815	0/0:173:171,0:171:6123:0:0:0,-51.4761,-550.81	0/1:54:18,36:18:644:36:1277:-96.9886,0,-42.035	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:86:49,37:49:1747:37:1328:-93.9337,0,-131.625	0/1:97:53,44:53:1896:44:1565:-111.938,0,-141.717	0/1:118:67,51:67:2396:51:1836:-129.999,0,-180.376	0/1:56:34,22:34:1220:22:773:-53.0318,0,-93.2491	0/1:45:22,23:22:788:23:828:-61.2978,0,-57.6984	0/0:46:46,0:46:1622:0:0:0,-13.8474,-146.267	0/1:108:56,52:56:2008:52:1834:-132.786,0,-148.482	0/1:21:10,11:10:356:11:392:-29.2984,0,-26.0596	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:98:52,46:52:1856:46:1637:-118.116,0,-137.819	0/1:58:18,40:18:639:40:1436:-112.078,0,-40.3785	0/0:153:153,0:153:5468:0:0:0,-46.0576,-491.759	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.584
chr07	14328212	.	T	G	99541.2	PASS	AB=0.44404;ABP=137.407;AC=134;AF=0.712766;AN=188;AO=5029;CIGAR=1X;DP=7796;DPB=7796;DPRA=83.8172;EPP=10923.3;EPPR=5989.76;GTI=6;LEN=1;MEANALT=1.06452;MQM=53.753;MQMR=59.9402;NS=94;NUMALT=1;ODDS=0.305527;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179587;QR=98964;RO=2761;RPL=0;RPP=10923.3;RPPR=5998.45;RPR=5029;RUN=1;SAF=5029;SAP=10923.3;SAR=0;SRF=2760;SRP=5989.76;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:13,16:13:464:16:572:-41.9642,0,-33.3676	0/1:167:111,55:111:3983:55:1972:-126.952,0,-308.328	0/1:116:74,42:74:2660:42:1488:-98.6001,0,-204.618	0/1:177:116,61:116:4168:61:2180:-142.818,0,-322.016	1/1:82:0,82:0:0:82:2921:-262.603,-24.6845,0	1/1:34:0,34:0:0:34:1224:-109.926,-10.235,0	1/1:44:0,44:0:0:44:1572:-141.673,-13.2453,0	0/1:125:64,61:64:2284:61:2173:-157.246,0,-168.176	1/1:28:0,28:0:0:28:1000:-89.8885,-8.42884,0	0/1:77:42,35:42:1508:35:1252:-89.6426,0,-112.835	1/1:42:0,42:0:0:42:1508:-135.917,-12.6433,0	1/1:58:0,58:0:0:58:2025:-181.696,-17.4597,0	0/1:42:23,19:23:824:19:680:-48.532,0,-61.8401	0/1:68:34,34:34:1220:34:1209:-87.7402,0,-89.6368	0/1:45:25,20:25:887:20:716:-51.1202,0,-66.6018	1/1:29:0,29:0:0:29:1036:-93.2913,-8.72987,0	1/1:57:0,57:0:0:57:2039:-183.054,-17.1587,0	1/1:38:0,38:0:0:38:1360:-122.222,-11.4391,0	0/1:19:15,4:15:540:4:144:-7.56058,0,-43.217	0/1:254:145,109:145:5208:109:3900:-273.735,0,-392.395	1/1:43:0,43:0:0:43:1528:-137.459,-12.9443,0	0/1:190:162,28:162:5820:28:1008:-33.5162,0,-466.715	0/1:25:3,22:3:108:22:788:-63.6642,0,-2.54942	0/1:34:12,22:12:428:22:783:-60.3983,0,-28.6238	0/1:53:31,22:31:1104:22:788:-53.7062,0,-83.716	0/1:244:122,122:122:4384:122:4358:-317.858,0,-321.278	1/1:152:0,152:0:0:152:5413:-486.002,-45.7566,0	1/1:26:0,26:0:0:26:927:-83.4823,-7.82678,0	0/1:260:123,136:123:4420:136:4852:-357.866,0,-319.644	1/1:306:10,296:10:360:296:10575:-915.24,-59.3709,0	1/1:56:2,54:2:72:54:1930:-166.456,-10.0234,0	0/1:2:1,1:1:36:1:36:-2.96475,0,-2.99621	1/1:8:0,8:0:0:8:284:-25.852,-2.40824,0	1/1:3:0,3:0:0:3:108:-10.0289,-0.90309,0	0/1:22:6,16:6:216:16:576:-45.2185,0,-13.1663	1/1:1:0,1:0:0:1:36:-3.58305,-0.30103,0	0/1:186:90,96:90:3236:96:3438:-253.28,0,-235.469	0/1:288:164,124:164:5867:124:4415:-307.485,0,-441.443	0/1:33:16,17:16:572:17:603:-44.3444,0,-41.8794	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:192:123,69:123:4412:69:2472:-164.181,0,-339.454	0/1:18:10,8:10:360:8:288:-20.8116,0,-27.3175	0/1:173:79,93:79:2825:93:3311:-245.04,0,-202.161	0/1:53:31,22:31:1116:22:788:-54.8812,0,-84.7971	0/1:49:27,22:27:972:22:784:-56.0005,0,-73.0474	1/1:43:1,42:1:36:42:1500:-131.451,-9.34602,0	1/1:260:0,260:0:0:260:9273:-830.885,-78.2678,0	0/1:190:90,100:90:3220:100:3580:-263.993,0,-232.825	1/1:82:0,82:0:0:82:2936:-264.104,-24.6845,0	0/1:154:85,69:85:3045:69:2480:-176.74,0,-227.918	0/1:144:76,68:76:2720:68:2436:-175.948,0,-201.69	0/1:11:4,7:4:144:7:252:-19.701,0,-9.99757	0/1:162:64,98:64:2296:98:3507:-265.591,0,-158.134	1/1:14:0,14:0:0:14:504:-45.6298,-4.21442,0	0/1:10:4,6:4:144:6:208:-15.9888,0,-10.3033	0/1:132:65,67:65:2324:67:2362:-172.608,0,-169.684	0/1:14:5,9:5:180:9:312:-24.1484,0,-12.3376	0/1:6:4,2:4:144:2:72:-5.02863,0,-11.5074	1/1:16:0,16:0:0:16:572:-51.7994,-4.81648,0	1/1:44:0,44:0:0:44:1568:-141.183,-13.2453,0	1/1:112:0,111:0:0:111:3960:-355.705,-33.4143,0	1/1:7:0,7:0:0:7:252:-23.0124,-2.10721,0	1/1:204:0,204:0:0:204:7309:-655.215,-61.4101,0	1/1:193:0,193:0:0:193:6913:-620.785,-58.0988,0	0/1:54:23,31:23:828:31:1104:-83.0132,0,-58.5885	1/1:70:0,70:0:0:70:2512:-225.03,-21.0721,0	0/1:88:50,38:50:1784:38:1356:-94.8634,0,-134.352	0/1:54:33,21:33:1169:21:752:-51.5345,0,-89.2597	1/1:9:0,9:0:0:9:320:-28.5977,-2.70927,0	1/1:51:0,51:0:0:51:1832:-163.872,-15.3525,0	0/1:74:39,35:39:1400:35:1244:-89.8806,0,-104.023	0/1:6:1,5:1:36:5:180:-14.7339,0,-1.79209	1/1:112:0,112:0:0:112:3984:-356.691,-33.7154,0	0/1:37:13,24:13:468:24:848:-65.138,0,-31.3215	1/1:22:0,22:0:0:22:783:-70.395,-6.62266,0	1/1:121:0,120:0:0:120:4285:-384.841,-36.1236,0	0/1:198:131,67:131:4691:67:2408:-156.128,0,-362.741	1/1:62:0,62:0:0:62:2216:-198.928,-18.6639,0	1/1:17:0,17:0:0:17:608:-54.7047,-5.11751,0	1/1:99:2,97:2:72:97:3466:-304.337,-22.9652,0	0/1:88:50,38:50:1796:38:1356:-95.1385,0,-135.432	0/1:180:122,58:122:4360:58:2072:-132.433,0,-338.388	0/1:95:41,54:41:1459:54:1940:-145.889,0,-103.007	0/1:34:22,12:22:783:12:432:-28.9579,0,-60.5579	0/1:41:21,20:21:752:20:716:-52.379,0,-55.664	0/1:116:67,49:67:2408:49:1756:-122.49,0,-182.057	1/1:33:0,33:0:0:33:1176:-105.688,-9.93399,0	1/1:81:1,80:1:36:80:2825:-251.372,-22.0099,0	1/1:68:0,67:0:0:67:2404:-215.2,-20.169,0	0/1:14:11,3:11:396:3:108:-5.84646,0,-31.7683	0/1:52:34,18:34:1215:18:629:-40.1346,0,-93.9798	0/1:46:27,19:27:968:19:671:-46.7431,0,-73.59	1/1:77:0,77:0:0:77:2756:-247.12,-23.1793,0	1/1:50:0,50:0:0:50:1792:-161.364,-15.0515,0
chr07	14328225	.	T	C	100988	PASS	AB=0.4444;ABP=136.06;AC=134;AF=0.712766;AN=188;AO=5052;CIGAR=1X;DP=7821;DPB=7821;DPRA=84.086;EPP=10843.4;EPPR=5907.7;GTI=6;LEN=1;MEANALT=1.02151;MQM=53.7298;MQMR=59.9422;NS=94;NUMALT=1;ODDS=0.268415;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180442;QR=99233;RO=2767;RPL=15;RPP=10843.4;RPPR=5899.09;RPR=5037;RUN=1;SAF=5052;SAP=10973.3;SAR=0;SRF=2766;SRP=6002.79;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:13,16:13:468:16:576:-42.3208,0,-33.7298	0/1:167:112,55:112:4012:55:1980:-127.72,0,-310.997	0/1:118:74,44:74:2664:44:1531:-101.862,0,-204.375	0/1:175:115,60:115:4113:60:2133:-139.127,0,-317.673	1/1:81:0,81:0:0:81:2895:-260.141,-24.3834,0	1/1:35:0,35:0:0:35:1256:-112.683,-10.5361,0	1/1:44:0,44:0:0:44:1556:-140.232,-13.2453,0	0/1:127:65,62:65:2332:62:2208:-159.777,0,-171.891	1/1:27:0,27:0:0:27:960:-86.2973,-8.12781,0	0/1:75:41,34:41:1472:34:1211:-86.5581,0,-110.199	1/1:42:0,42:0:0:42:1508:-135.915,-12.6433,0	1/1:60:0,60:0:0:60:2150:-192.511,-18.0618,0	0/1:44:24,20:24:860:20:716:-51.1521,0,-64.4765	0/1:71:35,36:35:1260:36:1288:-93.4066,0,-92.3324	0/1:45:25,20:25:876:20:720:-51.4316,0,-65.6079	1/1:30:0,30:0:0:30:1072:-96.4701,-9.0309,0	1/1:59:0,59:0:0:59:2111:-189.531,-17.7608,0	1/1:38:0,38:0:0:38:1364:-122.574,-11.4391,0	0/1:20:15,5:15:536:5:180:-10.4899,0,-42.5542	0/1:252:148,104:148:5308:104:3711:-257.551,0,-401.994	1/1:42:0,42:0:0:42:1508:-135.515,-12.6433,0	0/1:189:159,30:159:5716:30:1080:-40.2933,0,-457.66	0/1:25:3,22:3:108:22:788:-63.6642,0,-2.54942	0/1:34:12,22:12:428:22:792:-61.2081,0,-28.6238	0/1:53:31,22:31:1108:22:773:-52.7896,0,-84.0764	0/1:244:123,121:123:4404:121:4333:-315.529,0,-323.081	1/1:153:0,153:0:0:153:5472:-491.118,-46.0576,0	1/1:27:0,27:0:0:27:968:-87.1665,-8.12781,0	0/1:260:124,135:124:4441:135:4840:-356.884,0,-321.486	1/1:308:10,298:10:360:298:10658:-922.765,-59.9729,0	1/1:57:1,56:1:36:56:1985:-174.781,-13.5604,0	0/1:2:1,1:1:36:1:36:-2.96475,0,-2.99621	1/1:8:0,8:0:0:8:279:-25.3736,-2.40824,0	1/1:3:0,3:0:0:3:108:-10.0289,-0.90309,0	0/1:22:6,16:6:212:16:576:-45.2185,0,-12.8006	1/1:1:0,1:0:0:1:36:-3.58305,-0.30103,0	0/1:189:92,97:92:3300:97:3459:-254.344,0,-240.295	0/1:291:167,124:167:5985:124:4429:-308.071,0,-451.154	0/1:33:16,17:16:576:17:610:-45.0257,0,-42.241	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:195:125,70:125:4475:70:2500:-165.788,0,-344.218	0/1:18:10,8:10:360:8:288:-20.8116,0,-27.3175	0/1:173:79,94:79:2840:94:3360:-249.459,0,-203.57	0/1:52:31,21:31:1108:21:756:-52.4961,0,-84.3774	0/1:49:26,23:26:936:23:808:-58.2069,0,-69.809	1/1:43:1,42:1:36:42:1504:-131.778,-9.34602,0	1/1:259:0,259:0:0:259:9252:-828.946,-77.9668,0	0/1:192:90,102:90:3220:102:3638:-268.251,0,-232.222	1/1:81:0,81:0:0:81:2874:-258.542,-24.3834,0	0/1:155:83,72:83:2988:72:2568:-183.904,0,-222.49	0/1:140:75,65:75:2688:65:2340:-168.518,0,-200.016	0/1:12:4,8:4:144:8:277:-21.5644,0,-9.69654	0/1:163:65,98:65:2319:98:3509:-265.475,0,-159.902	1/1:14:0,14:0:0:14:500:-45.2685,-4.21442,0	0/1:10:4,6:4:144:6:212:-16.3496,0,-10.3033	0/1:134:66,68:66:2368:68:2440:-178.954,0,-173.04	0/1:14:5,9:5:180:9:324:-25.1842,0,-12.3376	0/1:6:4,2:4:140:2:72:-5.02863,0,-11.1384	1/1:16:0,16:0:0:16:576:-52.1604,-4.81648,0	1/1:48:0,48:0:0:48:1720:-154.443,-14.4494,0	1/1:111:0,111:0:0:111:3971:-357.003,-33.4143,0	1/1:6:0,6:0:0:6:216:-19.7762,-1.80618,0	1/1:205:0,205:0:0:205:7306:-656.392,-61.7112,0	1/1:198:0,197:0:0:197:7043:-632.017,-59.3029,0	0/1:54:24,30:24:864:30:1072:-80.1065,0,-61.8269	1/1:68:0,68:0:0:68:2432:-218.792,-20.47,0	0/1:90:51,39:51:1836:39:1400:-97.7818,0,-138.428	0/1:54:32,22:32:1148:22:779:-53.9624,0,-87.3742	1/1:9:0,9:0:0:9:309:-27.9371,-2.70927,0	1/1:52:0,52:0:0:52:1872:-167.457,-15.6536,0	0/1:75:39,36:39:1404:36:1281:-92.9237,0,-104.082	0/1:6:1,5:1:36:5:180:-14.7339,0,-1.79209	1/1:112:0,112:0:0:112:3986:-357.176,-33.7154,0	0/1:38:13,25:13:468:25:883:-67.9707,0,-31.0205	1/1:21:0,21:0:0:21:747:-67.185,-6.32163,0	1/1:119:0,119:0:0:119:4258:-382.77,-35.8226,0	0/1:199:132,67:132:4740:67:2400:-155.129,0,-366.846	1/1:62:0,62:0:0:62:2200:-197.616,-18.6639,0	1/1:17:0,17:0:0:17:608:-54.7047,-5.11751,0	1/1:100:2,98:2:72:98:3479:-305.431,-23.2663,0	0/1:86:49,37:49:1764:37:1324:-92.8736,0,-133.155	0/1:179:122,57:122:4368:57:2031:-129.048,0,-339.407	0/1:94:40,54:40:1440:54:1940:-146.19,0,-101.601	0/1:34:22,12:22:788:12:428:-28.5969,0,-61.0098	0/1:41:21,20:21:756:20:716:-52.3777,0,-56.025	0/1:115:65,50:65:2332:50:1791:-125.933,0,-175.521	1/1:33:0,33:0:0:33:1180:-106.044,-9.93399,0	1/1:80:0,80:0:0:80:2845:-255.211,-24.0824,0	1/1:70:0,70:0:0:70:2474:-222.085,-21.0721,0	0/1:15:12,3:12:432:3:108:-5.54543,0,-34.7057	0/1:51:34,17:34:1220:17:608:-38.461,0,-94.7448	0/1:46:27,19:27:972:19:684:-47.9141,0,-73.9505	1/1:77:0,77:0:0:77:2764:-248.121,-23.1793,0	1/1:49:0,49:0:0:49:1753:-157.933,-14.7505,0
chr07	14572912	.	A	T	99615.7	PASS	AB=0.489863;ABP=6.5322;AC=135;AF=0.725806;AN=186;AO=4820;CIGAR=1X;DP=6844;DPB=6844;DPRA=74.3804;EPP=10400.1;EPPR=4361.22;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.9357;MQMR=59.996;NS=93;NUMALT=1;ODDS=0.667659;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172573;QR=72388;RO=2023;RPL=7;RPP=10408.8;RPPR=4369.88;RPR=4813;RUN=1;SAF=4819;SAP=10460.8;SAR=1;SRF=2022;SRP=4387.22;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:26,18:26:936:18:618:-42.6938,0,-71.3141	0/1:163:85,78:85:3029:78:2791:-202.359,0,-223.772	0/1:206:82,124:82:2944:124:4426:-336.446,0,-203.181	0/1:106:66,40:66:2349:40:1428:-96.9084,0,-179.758	1/1:50:0,50:0:0:50:1784:-160.841,-15.0515,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:99:0,99:0:0:99:3536:-318.447,-29.802,0	0/1:78:33,45:33:1169:45:1616:-122.25,0,-82.0349	1/1:88:0,88:0:0:88:3160:-284.567,-26.4906,0	0/1:67:37,30:37:1328:30:1076:-76.9838,0,-99.6532	1/1:57:0,57:0:0:57:2052:-184.949,-17.1587,0	1/1:109:0,109:0:0:109:3893:-350.563,-32.8123,0	0/1:68:35,33:35:1260:33:1184:-86.3983,0,-93.2354	0/1:52:27,25:27:968:25:896:-65.3068,0,-71.7838	0/1:39:14,25:14:500:25:896:-69.2202,0,-33.596	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:48:27,21:27:968:21:756:-53.9178,0,-72.9879	0/1:98:50,48:50:1780:48:1724:-125.944,0,-130.982	1/1:116:0,116:0:0:116:4144:-373.142,-34.9195,0	0/1:53:39,14:39:1404:14:500:-29.3816,0,-110.705	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	0/1:89:43,46:43:1544:46:1638:-120.916,0,-112.461	0/1:91:30,61:30:1080:61:2159:-167.174,0,-70.1195	0/1:151:71,80:71:2556:80:2876:-213.621,0,-184.834	1/1:208:0,208:0:0:208:7452:-670.72,-62.6142,0	1/1:29:1,28:1:36:28:1008:-87.4381,-5.1316,0	0/1:144:81,63:81:2896:63:2256:-159.946,0,-217.528	1/1:148:1,147:1:36:147:5280:-471.735,-40.9542,0	1/1:85:0,85:0:0:85:3030:-272.931,-25.5876,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:8:6,2:6:216:2:63:-3.57491,0,-17.3823	0/1:178:86,92:86:3076:92:3292:-242.915,0,-223.485	0/1:103:57,46:57:2040:46:1656:-118.322,0,-152.866	0/1:56:33,23:33:1180:23:828:-57.9864,0,-89.6504	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:139:81,58:81:2897:58:2064:-144.188,0,-219.121	0/1:85:45,40:45:1616:40:1440:-104.31,0,-120.142	0/1:128:57,71:57:2029:71:2535:-189.847,0,-144.349	0/1:48:18,30:18:648:30:1080:-83.0615,0,-44.2024	0/1:43:25,18:25:896:18:648:-45.7076,0,-68.0161	1/1:86:0,86:0:0:86:3075:-276.978,-25.8886,0	1/1:94:0,94:0:0:94:3372:-303.682,-28.2968,0	0/1:85:40,45:40:1432:45:1605:-119.151,0,-103.59	1/1:92:0,92:0:0:92:3295:-296.768,-27.6948,0	0/1:73:36,37:36:1292:37:1332:-98.2072,0,-94.6086	0/1:129:38,91:38:1360:91:3252:-254.066,0,-83.8677	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:76:43,33:43:1540:33:1184:-83.99,0,-116.015	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	0/1:11:6,5:6:201:5:180:-13.2407,0,-15.1057	0/1:81:55,26:55:1972:26:932:-59.8108,0,-153.371	0/1:57:32,25:32:1132:25:888:-63.0803,0,-85.0299	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:82:0,82:0:0:82:2940:-264.826,-24.6845,0	1/1:96:1,95:1:36:95:3397:-302.345,-25.3006,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:74:2,72:2:72:72:2575:-225.162,-15.4395,0	1/1:139:1,138:1:36:138:4928:-439.7,-38.2449,0	0/1:62:28,34:28:985:34:1216:-91.0823,0,-70.2977	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:87:40,47:40:1436:47:1681:-125.388,0,-103.348	0/1:125:77,48:77:2756:48:1724:-117.817,0,-210.653	1/1:34:1,33:1:36:33:1179:-102.819,-6.63675,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:48:25,23:25:900:23:819:-59.5821,0,-66.8716	0/1:17:10,7:10:360:7:244:-17.1819,0,-27.6268	1/1:101:0,101:0:0:101:3619:-325.909,-30.404,0	0/1:76:45,31:45:1612:31:1112:-77.5131,0,-122.492	1/1:119:1,118:1:36:118:4228:-376.664,-32.2243,0	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	0/1:83:43,40:43:1532:40:1436:-104.55,0,-113.188	1/1:84:0,84:0:0:84:3020:-271.982,-25.2865,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:84:0,84:0:0:84:3007:-270.856,-25.2865,0	0/1:64:39,25:39:1400:25:896:-61.6944,0,-107.033	0/1:144:66,78:66:2364:78:2803:-209.161,0,-169.67	0/1:63:32,31:32:1148:31:1107:-80.9753,0,-84.6603	0/1:57:35,22:35:1252:22:792:-54.447,0,-95.8264	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/1:79:38,41:38:1360:41:1470:-108.586,0,-98.9192	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:66:0,66:0:0:66:2357:-212.385,-19.868,0	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	0/1:42:22,20:22:788:20:720:-52.4855,0,-58.6015	0/1:98:48,49:48:1701:49:1747:-127.954,0,-123.814	0/1:58:37,21:37:1332:21:743:-49.7336,0,-102.723	1/1:47:2,45:2:72:45:1597:-137.181,-7.31169,0	1/1:93:0,93:0:0:93:3344:-301.176,-27.9958,0
chr07	14740281	.	CT	TC,TT	128513	PASS	AB=0.549427,0.448162;ABP=73.4189,80.4556;AC=136,52;AF=0.723404,0.276596;AN=188;AO=4585,1496;CIGAR=2X,1X1M;DP=6098;DPB=6098;DPRA=32.7742,1.03912;EPP=9959.21,3251.53;EPPR=0;GTI=2;LEN=2,1;MEANALT=1.75269,2.16071;MQM=53.5328,59.982;MQMR=0;NS=94;NUMALT=2;ODDS=1.55934;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=162819,53563;QR=0;RO=0;RPL=0,0;RPP=9959.21,3251.53;RPPR=0;RPR=4585,1496;RUN=1,1;SAF=4585,1496;SAP=9959.21,3251.53;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,26,13:0:0:26,13:932,468:-114.271,-38.5463,-30.7195,-76.0839,0,-72.1705	1/2:47:0,32,15:0:0:32,15:1135,536:-136.264,-44.0594,-34.4264,-92.5602,0,-88.0448	1/2:129:0,68,61:0:0:68,61:2411,2192:-374.437,-179.171,-158.701,-195.622,0,-177.259	1/2:147:0,74,73:0:0:74,73:2592,2620:-424.403,-214.072,-191.796,-210.685,0,-188.71	1/1:17:0,16,0:0:0:16,0:572,0:-51.4574,-4.81648,0,-51.4574,-4.81648,-51.4574	1/1:15:0,15,0:0:0:15,0:540,0:-48.5917,-4.51545,0,-48.5917,-4.51545,-48.5917	1/1:93:0,91,1:0:0:91,1:3253,36:-292.301,-27.3937,0,-289.364,-24.4014,-289.063	1/2:115:0,61,53:0:0:61,53:2138,1889:-326.612,-153.971,-135.608,-172.634,0,-156.68	1/1:86:0,85,0:0:0:85,0:3013,0:-268.295,-25.5876,0,-268.295,-25.5876,-268.295	1/2:64:0,34,30:0:0:34,30:1196,1076:-185.226,-88.122,-77.8869,-97.4592,0,-88.4283	1/1:53:0,53,0:0:0:53,0:1874,0:-168.492,-15.9546,0,-168.492,-15.9546,-168.492	1/1:86:0,85,0:0:0:85,0:3041,0:-272.021,-25.5876,0,-272.021,-25.5876,-272.021	1/2:46:0,31,15:0:0:31,15:1097,540:-132.895,-44.4211,-35.0892,-88.8307,0,-84.3153	1/2:37:0,22,15:0:0:22,15:790,540:-108.625,-44.4211,-37.7984,-64.5624,0,-60.0469	1/2:54:0,31,23:0:0:31,23:1090,824:-155.044,-67.5596,-58.2277,-87.8376,0,-80.9139	1/1:54:0,54,0:0:0:54,0:1942,0:-174.547,-16.2556,0,-174.547,-16.2556,-174.547	1/1:44:0,44,0:0:0:44,0:1584,0:-142.135,-13.2453,0,-142.135,-13.2453,-142.135	1/1:34:0,34,0:0:0:34,0:1222,0:-109.924,-10.235,0,-109.924,-10.235,-109.924	1/2:35:0,19,16:0:0:19,16:682,572:-102.471,-46.9969,-41.2774,-55.8321,0,-51.0156	1/2:64:0,36,28:0:0:36,28:1288,989:-185.732,-80.8932,-70.0561,-105.194,0,-96.7647	1/1:83:0,83,0:0:0:83,0:2937,0:-263.765,-24.9855,0,-263.765,-24.9855,-263.765	1/2:39:0,7,32:0:0:7,32:250,1152:-114.732,-94.3572,-92.25,-20.7319,0,-11.099	1/1:61:0,61,0:0:0:61,0:2139,0:-192.566,-18.3628,0,-192.566,-18.3628,-192.566	1/2:67:0,39,28:0:0:39,28:1355,1008:-192.131,-82.6075,-70.8673,-109.877,0,-101.448	1/2:71:0,48,22:0:0:48,22:1698,773:-200.438,-63.0507,-48.6013,-137.522,0,-130.899	1/2:221:0,147,72:0:0:147,72:5193,2580:-631.878,-210.522,-166.271,-421.459,0,-399.785	1/1:206:0,206,0:0:0:206,0:7323,0:-656.547,-62.0122,0,-656.547,-62.0122,-656.547	1/1:38:0,38,0:0:0:38,0:1366,0:-122.842,-11.4391,0,-122.842,-11.4391,-122.842	1/2:104:0,54,49:0:0:54,49:1925,1760:-300.092,-143.673,-127.418,-156.516,0,-141.765	1/1:87:0,84,3:0:0:84,3:2970,104:-266.439,-25.2865,0,-257.986,-16.4868,-257.083	1/1:82:0,82,0:0:0:82,0:2942,0:-264.6,-24.6845,0,-264.6,-24.6845,-264.6	1/2:5:0,2,3:0:0:2,3:72,108:-15.0375,-9.17208,-8.57002,-6.22497,0,-5.32188	1/1:6:0,6,0:0:0:6,0:212,0:-19.3981,-1.80618,0,-19.3981,-1.80618,-19.3981	1/1:7:0,7,0:0:0:7,0:252,0:-22.9711,-2.10721,0,-22.9711,-2.10721,-22.9711	1/2:14:0,7,7:0:0:7,7:241,252:-40.4374,-20.9217,-18.8145,-19.8672,0,-17.76	1/2:9:0,3,6:0:0:3,6:106,216:-26.5932,-17.9843,-17.0812,-8.96377,0,-7.15759	1/2:145:0,77,68:0:0:77,68:2742,2429:-419.57,-198.394,-175.215,-221.531,0,-201.061	1/2:61:0,29,32:0:0:29,32:1026,1144:-176.101,-93.6366,-84.9067,-82.8181,0,-73.1851	1/2:40:0,20,20:0:0:20,20:705,720:-116.236,-59.1082,-53.0876,-57.4834,0,-51.4628	1/1:2:0,2,0:0:0:2,0:72,0:-6.82703,-0.60206,0,-6.82703,-0.60206,-6.82703	1/2:110:0,48,62:0:0:48,62:1707,2217:-319.939,-181.129,-166.679,-139.166,0,-120.502	1/2:19:0,13,6:0:0:13,6:468,216:-56.0667,-17.9843,-14.0709,-38.4419,0,-36.6358	1/2:78:0,50,28:0:0:50,28:1787,1004:-226.841,-82.247,-67.1955,-144.951,0,-136.522	1/2:45:0,25,20:0:0:25,20:896,720:-132.004,-59.1082,-51.5824,-73.2545,0,-67.2339	1/2:58:0,30,27:0:0:30,27:1065,972:-166.03,-79.4166,-70.3857,-86.7151,0,-78.5873	1/1:68:0,68,0:0:0:68,0:2431,0:-218.434,-20.47,0,-218.434,-20.47,-218.434	1/1:72:0,70,1:0:0:70,1:2426,36:-216.55,-21.0721,0,-213.612,-18.0696,-213.311	1/2:97:0,61,35:0:0:61,35:2170,1260:-279.37,-102.812,-84.4487,-176.559,0,-166.023	1/1:36:0,36,0:0:0:36,0:1290,0:-116.255,-10.8371,0,-116.255,-10.8371,-116.255	1/2:89:0,57,32:0:0:57,32:2040,1148:-260.131,-93.9969,-76.8382,-166.492,0,-156.859	1/2:23:0,14,9:0:0:14,9:504,324:-67.8524,-26.7966,-22.5822,-41.4154,0,-38.7062	1/1:2:0,2,0:0:0:2,0:72,0:-6.83179,-0.60206,0,-6.83179,-0.60206,-6.83179	1/2:127:0,72,55:0:0:72,55:2557,1976:-368.766,-161.558,-139.884,-207.564,0,-191.008	1/1:26:0,24,1:0:0:24,1:853,36:-76.7411,-7.22472,0,-73.8057,-4.23418,-73.5047	1/1:5:0,5,0:0:0:5,0:180,0:-16.5105,-1.50515,0,-16.5105,-1.50515,-16.5105	1/2:77:0,44,33:0:0:44,33:1558,1184:-223.193,-96.9343,-83.689,-126.614,0,-116.68	1/2:21:0,13,8:0:0:13,8:464,288:-61.6299,-23.8592,-19.9458,-38.1292,0,-35.721	2/2:2:0,0,2:0:0:0,2: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chr07	14740314	.	C	T	267669	PASS	AB=0.522042;ABP=35.7486;AC=135;AF=0.718085;AN=188;AO=10052;CIGAR=1X;DP=13781;DPB=13781;DPRA=0;EPP=21830.7;EPPR=8091.75;GTI=0;LEN=1;MEANALT=1.04255;MQM=57.12;MQMR=59.9809;NS=94;NUMALT=1;ODDS=0.406524;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=359568;QR=132679;RO=3725;RPL=4506;RPP=236.662;RPPR=289.47;RPR=5546;RUN=1;SAF=4506;SAP=236.662;SAR=5546;SRF=1512;SRP=289.47;SRR=2213;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:25,55:25:884:55:1970:-153.119,0,-55.796	0/1:195:76,119:76:2711:119:4246:-323.338,0,-185.533	0/1:204:99,105:99:3507:105:3756:-275.884,0,-254.423	0/1:342:159,182:159:5678:182:6516:-482.805,0,-408.277	1/1:73:0,73:0:0:73:2624:-236.33,-21.9752,0	1/1:79:0,79:0:0:79:2836:-255.135,-23.7814,0	1/1:203:1,202:1:36:202:7216:-645.59,-57.5108,0	0/1:317:156,161:156:5545:161:5767:-422.59,0,-403.739	1/1:186:0,186:0:0:186:6616:-593.375,-55.9916,0	0/1:137:60,77:60:2141:77:2738:-205.173,0,-151.715	1/1:85:0,85:0:0:85:3042:-273.598,-25.5876,0	1/1:139:0,139:0:0:139:4958:-444.757,-41.8432,0	0/1:84:27,57:27:964:57:2039:-157.413,0,-61.7903	0/1:88:39,49:39:1388:49:1754:-131.423,0,-98.7283	0/1:94:40,54:40:1440:54:1927:-144.315,0,-101.601	1/1:110:1,109:1:36:109:3904:-347.531,-29.515,0	1/1:89:0,89:0:0:89:3201:-287.652,-26.7917,0	1/1:86:0,86:0:0:86:3077:-276.828,-25.8886,0	0/1:55:26,29:26:915:29:1036:-76.8413,0,-66.1089	0/1:215:116,99:116:4143:99:3544:-254.346,0,-308.332	1/1:230:0,230:0:0:230:8214:-738.46,-69.2369,0	0/1:113:77,36:77:2756:36:1296:-82.9198,0,-214.266	1/1:145:0,145:0:0:145:5187:-466.797,-43.6494,0	0/1:212:94,118:94:3365:118:4227:-315.999,0,-239.246	0/1:129:50,78:50:1764:78:2800:-212.927,0,-120.325	0/1:473:207,266:207:7370:266:9524:-713.059,0,-520.96	1/1:406:0,406:0:0:406:14563:-1307.68,-122.218,0	1/1:71:1,70:1:36:70:2508:-222.078,-17.7749,0	0/1:287:150,137:150:5361:137:4883:-352.926,0,-396.226	1/1:222:5,217:5:180:217:7780:-682.859,-50.2766,0	1/1:195:3,192:3:108:192:6832:-604.518,-48.6257,0	0/1:7:3,4:3:108:4:144:-11.197,0,-7.96796	1/1:15:0,15:0:0:15:536:-48.5435,-4.51545,0	1/1:8:0,8:0:0:8:288:-26.2096,-2.40824,0	0/1:23:15,8:15:540:8:288:-19.2859,0,-42.0128	0/1:14:11,3:11:396:3:108:-5.83542,0,-31.7683	0/1:304:148,156:148:5247:156:5584:-409.729,0,-380.857	0/1:151:85,66:85:3019:66:2361:-165.814,0,-226.482	0/1:67:32,35:32:1139:35:1243:-91.6489,0,-82.6494	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:269:140,129:140:5018:129:4636:-336.004,0,-370.786	0/1:37:14,23:14:500:23:828:-63.6021,0,-34.1981	0/1:141:60,81:60:2139:81:2891:-217.466,0,-150.332	0/1:129:54,74:54:1906:74:2629:-197.803,0,-132.924	0/1:121:56,65:56:1995:65:2323:-172.698,0,-143.399	1/1:141:0,141:0:0:141:5045:-453.848,-42.4452,0	1/1:175:2,173:2:72:173:6190:-548.193,-45.8435,0	0/1:215:107,108:107:3843:108:3867:-283.117,0,-281.343	1/1:131:0,131:0:0:131:4704:-423.356,-39.4349,0	0/1:256:114,142:114:4065:142:5066:-378.774,0,-288.973	0/1:184:106,78:106:3778:78:2773:-194.401,0,-284.83	0/1:5:3,2:3:108:2:72:-5.32664,0,-8.57002	0/1:271:119,152:119:4245:152:5403:-403.646,0,-300.65	1/1:61:0,61:0:0:61:2173:-195.67,-18.3628,0	0/1:9:3,6:3:104:6:216:-17.0398,0,-6.99354	0/1:197:104,93:104:3728:93:3305:-237.94,0,-276.418	0/1:94:49,45:49:1760:45:1599:-115.848,0,-130.387	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:25:0,25:0:0:25:900:-81.3137,-7.52575,0	1/1:139:0,139:0:0:139:4976:-447.103,-41.8432,0	1/1:176:1,175:1:36:175:6280:-560.745,-49.383,0	0/1:2:1,1:1:36:1:36:-2.99362,0,-2.99621	1/1:318:0,318:0:0:318:11409:-1026.06,-95.7275,0	1/1:326:5,321:5:180:321:11472:-1014.47,-81.5837,0	0/1:91:41,50:41:1443:50:1800:-134.77,0,-102.769	1/1:130:0,130:0:0:130:4660:-419.288,-39.1339,0	0/1:272:124,148:124:4412:148:5304:-395.009,0,-315.372	0/1:181:121,60:121:4285:60:2152:-139.263,0,-331.342	1/1:43:0,43:0:0:43:1540:-138.615,-12.9443,0	1/1:98:0,98:0:0:98:3516:-315.687,-29.5009,0	0/1:125:48,77:48:1698:77:2755:-210.347,0,-115.476	0/1:56:29,27:29:1029:27:963:-70.0342,0,-76.0635	1/1:147:0,147:0:0:147:5256:-472.167,-44.2514,0	0/1:134:70,64:70:2471:64:2300:-166.663,0,-182.304	1/1:295:0,295:0:0:295:10529:-945.409,-88.8039,0	1/1:331:0,331:0:0:331:11796:-1060.41,-99.6409,0	0/1:152:83,69:83:2984:69:2472:-176.559,0,-223.035	1/1:204:0,204:0:0:204:7312:-656.747,-61.4101,0	1/1:13:0,13:0:0:13:468:-41.176,-3.91339,0	1/1:219:1,218:1:36:218:7815:-698.623,-62.3273,0	0/1:155:69,86:69:2445:86:3092:-231.556,0,-173.645	0/1:272:102,170:102:3632:170:6076:-464.629,0,-245.204	0/1:152:71,81:71:2524:81:2889:-214.418,0,-181.651	0/1:102:53,48:53:1891:48:1703:-121.373,0,-139.704	0/1:101:34,67:34:1208:67:2404:-185.898,0,-78.6221	0/1:204:100,104:100:3520:104:3720:-273.138,0,-255.6	1/1:58:0,58:0:0:58:2069:-186.038,-17.4597,0	1/1:132:0,132:0:0:132:4718:-423.619,-39.736,0	1/1:111:0,111:0:0:111:3984:-357.926,-33.4143,0	0/1:52:22,30:22:784:30:1076:-81.2501,0,-55.2304	0/1:105:46,59:46:1639:59:2112:-157.949,0,-115.92	0/1:78:62,16:62:2212:16:576:-28.6782,0,-175.865	1/1:244:0,244:0:0:244:8708:-782.409,-73.4513,0	1/1:162:1,161:1:36:161:5769:-514.17,-45.1686,0
chr07	14962356	.	T	G	106732	PASS	AB=0.489159;ABP=6.44712;AC=135;AF=0.718085;AN=188;AO=4041;CIGAR=1X;DP=5773;DPB=5773;DPRA=0;EPP=9.16254;EPPR=5.78782;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9921;MQMR=60;NS=94;NUMALT=1;ODDS=1.28;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143825;QR=61821;RO=1727;RPL=19;RPP=8613.67;RPPR=3753.14;RPR=4022;RUN=1;SAF=2093;SAP=14.3083;SAR=1948;SRF=840;SRP=5.78782;SRR=887;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:19,19:19:680:19:669:-49.0948,0,-50.09	0/1:50:27,23:27:972:23:828:-59.7926,0,-72.7464	0/1:59:31,28:31:1089:28:1000:-72.5546,0,-80.5565	0/1:80:42,38:42:1493:38:1340:-96.8157,0,-110.58	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:27:0,27:0:0:27:952:-85.9952,-8.12781,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	0/1:80:45,35:45:1612:35:1244:-88.1823,0,-121.288	1/1:66:1,65:1:36:65:2324:-205.822,-16.2697,0	0/1:39:21,18:21:752:18:644:-46.5504,0,-56.2661	1/1:84:0,84:0:0:84:3011:-271.22,-25.2865,0	1/1:125:0,125:0:0:125:4471:-402.559,-37.6288,0	0/1:101:43,58:43:1540:58:2057:-154.996,0,-108.489	0/1:75:40,34:40:1436:34:1208:-86.3902,0,-106.902	0/1:67:28,38:28:1000:38:1347:-101.302,0,-70.0877	1/1:96:0,96:0:0:96:3452:-310.891,-28.8989,0	1/1:108:0,108:0:0:108:3852:-346.877,-32.5112,0	1/1:54:0,54:0:0:54:1920:-173.077,-16.2556,0	0/1:61:38,23:38:1368:23:820:-55.7597,0,-105.058	0/1:65:32,33:32:1144:33:1176:-86.5808,0,-83.7026	1/1:77:0,77:0:0:77:2726:-245.581,-23.1793,0	0/1:21:15,6:15:536:6:212:-13.1032,0,-42.2532	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/1:37:18,19:18:644:19:676:-50.0299,0,-47.1525	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	0/1:80:37,43:37:1319:43:1514:-112.467,0,-94.9288	1/1:89:0,89:0:0:89:3171:-285.615,-26.7917,0	1/1:48:0,48:0:0:48:1711:-154.275,-14.4494,0	0/1:81:34,47:34:1224:47:1688:-127.824,0,-86.0836	1/1:40:2,38:2:72:38:1355:-115.413,-5.20448,0	1/1:72:3,69:3:108:69:2442:-209.957,-11.599,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:255:139,116:139:4974:116:4106:-292.962,0,-371.045	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:77:37,40:37:1332:40:1430:-105.818,0,-97.0031	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/1:66:32,34:32:1140:34:1173:-86.0013,0,-83.0412	0/1:60:39,21:39:1404:21:748:-49.5835,0,-108.597	0/1:76:40,36:40:1436:36:1276:-92.2648,0,-106.659	0/1:140:70,69:70:2516:69:2442:-177.831,0,-184.489	0/1:85:44,41:44:1576:41:1410:-101.601,0,-116.544	1/1:55:1,54:1:36:54:1898:-167.496,-12.9584,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	0/1:68:28,40:28:992:40:1423:-107.897,0,-69.1244	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:48:26,22:26:936:22:769:-55.0792,0,-70.11	0/1:53:19,34:19:676:34:1200:-92.3483,0,-45.2134	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:51:24,27:24:864:27:947:-70.1919,0,-62.73	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:51:20,31:20:720:31:1108:-84.6781,0,-49.7762	0/1:27:15,12:15:536:12:419:-29.9149,0,-40.447	0/1:4:2,2:2:68:2:68:-5.25359,0,-5.25359	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:109:0,108:0:0:108:3830:-344.536,-32.5112,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:56:0,56:0:0:56:1964:-177.033,-16.8577,0	1/1:99:1,98:1:36:98:3500:-311.611,-26.2037,0	0/1:48:25,23:25:887:23:802:-58.0475,0,-65.6987	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:98:54,44:54:1932:44:1564:-111.551,0,-144.656	0/1:49:34,15:34:1204:15:540:-34.1861,0,-93.9154	1/1:68:0,68:0:0:68:2443:-220.125,-20.47,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:93:51,42:51:1823:42:1489:-106.307,0,-136.355	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:52:23,29:23:820:29:1028:-77.1795,0,-58.469	1/1:88:0,88:0:0:88:3116:-280.666,-26.4906,0	1/1:57:2,55:2:72:55:1942:-168.218,-10.322,0	0/1:46:26,20:26:924:20:701:-49.5643,0,-69.6303	1/1:67:0,67:0:0:67:2387:-215.087,-20.169,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	0/1:38:16,22:16:576:22:788:-59.8057,0,-40.7358	0/1:89:43,46:43:1524:46:1644:-121.457,0,-110.661	0/1:118:60,58:60:2160:58:2076:-151.589,0,-159.145	0/1:82:40,42:40:1432:42:1504:-110.97,0,-104.493	0/1:103:58,45:58:2084:45:1596:-112.924,0,-156.824	0/1:181:70,110:70:2508:110:3910:-297.547,0,-171.427	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:97:0,97:0:0:97:3468:-312.332,-29.1999,0	0/1:58:34,24:34:1224:24:864:-60.6228,0,-93.0073	0/1:127:58,69:58:2088:69:2440:-181.622,0,-149.959	0/1:117:82,35:82:2940:35:1256:-78.1248,0,-229.613	1/1:87:0,87:0:0:87:3106:-279.754,-26.1896,0	1/1:165:1,164:1:36:164:5861:-524.002,-46.0717,0
chr07	15364604	.	C	T	95651	PASS	AB=0.328542;ABP=8298.96;AC=48;AF=0.255319;AN=188;AO=10747;CIGAR=1X;DP=54435;DPB=54435;DPRA=1.80792;EPP=23313.8;EPPR=94679.3;GTI=6;LEN=1;MEANALT=1.06452;MQM=27.1776;MQMR=23.9804;NS=94;NUMALT=1;ODDS=6.07255;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=381422;QR=1549142;RO=43680;RPL=8770;RPP=9326.75;RPPR=27066;RPR=1977;RUN=1;SAF=8767;SAP=9310.29;SAR=1980;SRF=33498;SRP=27028.9;SRR=10182;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:239:179,60:179:6256:60:2140:-25.5258,0,-241.487	0/1:867:676,191:676:23985:191:6789:-111.26,0,-962.862	0/1:779:639,140:639:22681:140:4950:-17.4335,0,-876.055	0/0:652:650,2:650:23120:2:72:0,-191.955,-1358.28	0/0:389:388,1:388:13732:1:36:0,-116.102,-807.346	0/0:321:321,0:321:11375:0:0:0,-96.6306,-641.646	0/0:472:472,0:472:16835:0:0:0,-142.086,-981.066	0/1:700:535,165:535:19034:165:5846:-100.231,0,-776.478	0/1:663:471,192:471:16670:192:6851:-163.762,0,-694.139	0/1:568:404,164:404:14327:164:5789:-164.591,0,-618.44	0/1:427:292,135:292:10337:135:4786:-220.437,0,-496.727	0/0:186:186,0:186:6563:0:0:0,-55.9916,-342.397	0/1:227:178,49:178:6252:49:1735:-6.35255,0,-241.56	0/1:236:187,49:187:6604:49:1744:-9.61665,0,-267.987	0/0:127:127,0:127:4516:0:0:0,-38.2308,-260.956	0/1:199:164,35:164:5761:35:1212:-8.20129,0,-252.314	0/0:283:234,49:234:8282:49:1764:0,-7.2692,-316.906	0/0:117:117,0:117:4154:0:0:0,-35.2205,-220.021	0/0:301:301,0:301:10689:0:0:0,-90.61,-630.748	0/1:1273:997,276:997:35445:276:9730:-217.159,0,-1571.64	0/1:891:722,169:722:25505:169:6020:-139.76,0,-1111.54	0/0:298:298,0:298:10553:0:0:0,-89.7069,-645.048	0/1:440:348,92:348:12334:92:3271:-71.9894,0,-511.832	0/1:561:399,162:399:14172:162:5709:-150.841,0,-615.346	0/1:394:286,108:286:10139:108:3841:-100.659,0,-386.445	0/0:854:854,0:854:30318:0:0:0,-257.08,-1892.32	0/0:873:873,0:873:31009:0:0:0,-262.799,-1748.33	0/0:127:127,0:127:4502:0:0:0,-38.2308,-224.113	0/1:1312:1014,298:1014:36051:298:10564:-311.323,0,-1523.05	0/1:530:405,125:405:14401:125:4441:-116.72,0,-589.781	0/1:719:558,161:558:19775:161:5716:-154.643,0,-921.377	0/0:1609:1608,1:1608:57161:1:36:0,-481.058,-4141.81	0/0:1305:1304,1:1304:46427:1:36:0,-391.845,-3306.76	0/1:1308:716,590:716:25235:590:20942:-966.281,0,-1296.28	0/1:2313:1124,1189:1124:39653:1189:42300:-2047.79,0,-1948.4	0/0:1601:1600,1:1600:56805:1:36:0,-479.39,-3769.47	0/1:707:546,161:546:19295:161:5714:-114.902,0,-833.608	0/0:361:361,0:361:12850:0:0:0,-108.672,-746.453	0/1:488:326,162:326:11517:162:5752:-186.768,0,-519.875	0/1:939:545,394:545:19320:394:13946:-840.972,0,-1100.89	0/0:709:708,0:708:25086:0:0:0,-213.129,-1390.05	0/0:239:239,0:239:8478:0:0:0,-71.9462,-556.224	0/1:777:569,208:569:20235:208:7358:-180.73,0,-814.527	0/1:325:262,63:262:9245:63:2256:-36.1706,0,-377.789	0/1:201:149,52:149:5259:52:1838:-42.4707,0,-214.954	0/0:346:344,2:344:12238:2:72:0,-97.7122,-703.143	0/1:550:411,139:411:14567:139:4936:-97.1464,0,-603.794	0/0:559:559,0:559:19850:0:0:0,-168.276,-1147.27	0/0:384:383,0:383:13618:0:0:0,-115.294,-764.454	0/1:669:517,152:517:18367:152:5407:-159.186,0,-801.248	0/0:512:512,0:512:18125:0:0:0,-154.127,-1032.32	0/1:1343:756,587:756:26902:587:20803:-1264,0,-1474.45	0/0:542:542,0:542:19353:0:0:0,-163.158,-1046.33	0/1:203:159,44:159:5629:44:1551:-35.7684,0,-243.328	0/1:1251:634,617:634:22424:617:21915:-1032.39,0,-1079.83	0/1:686:575,111:575:20351:111:3901:-11.0542,0,-858.974	0/0:209:209,0:209:7412:0:0:0,-62.9153,-455.099	0/1:1331:699,632:699:24814:632:22487:-1382.58,0,-1338.68	0/0:1377:1373,4:1373:48701:4:144:0,-402.67,-3421.07	0/1:413:298,114:298:10612:114:4019:-57.4708,0,-443.371	0/0:228:228,0:228:8078:0:0:0,-68.6348,-471.117	0/1:1002:496,506:496:17624:506:17939:-1147.87,0,-936.209	0/0:286:286,0:286:10158:0:0:0,-86.0946,-562.58	0/0:646:644,1:644:22872:1:36:0,-193.094,-1362.88	0/1:398:303,94:303:10722:94:3319:-72.7756,0,-451.014	0/0:412:412,0:412:14605:0:0:0,-124.024,-851.363	0/0:612:606,6:606:21489:6:216:0,-166.328,-1306.87	0/0:443:443,0:443:15767:0:0:0,-133.356,-903.255	0/0:217:216,1:216:7627:1:36:0,-62.0245,-506.062	0/0:317:317,0:317:11213:0:0:0,-95.4265,-630.64	0/0:168:167,0:167:5900:0:0:0,-50.272,-346.514	0/1:825:478,347:478:16999:347:12342:-706.748,0,-913.18	0/1:346:220,126:220:7772:126:4461:-114.976,0,-302.507	0/1:349:260,89:260:9189:89:3157:-56.0643,0,-375.329	0/1:973:751,222:751:26586:222:7857:-161.927,0,-1095.28	0/0:531:531,0:531:18877:0:0:0,-159.847,-1114.76	0/0:450:450,0:450:15953:0:0:0,-135.463,-912.894	0/0:387:387,0:387:13733:0:0:0,-116.499,-767.2	0/1:1614:794,820:794:28099:820:29277:-1400.93,0,-1378.18	0/0:434:433,1:433:15385:1:36:0,-129.648,-896.312	0/0:396:396,0:396:13906:0:0:0,-119.208,-814.985	0/0:761:761,0:761:27029:0:0:0,-229.084,-1578.03	0/1:349:285,64:285:10131:64:2263:-13.9904,0,-426.401	0/0:101:101,0:101:3583:0:0:0,-30.404,-199.014	0/1:265:205,60:205:7213:60:2123:-33.0237,0,-300.624	0/1:469:370,99:370:13144:99:3482:-36.9511,0,-554.529	0/1:147:102,45:102:3644:45:1596:-29.0777,0,-133.886	0/0:188:187,1:187:6579:1:36:0,-53.8574,-350.389	0/0:161:161,0:161:5735:0:0:0,-48.4658,-297.1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chr07	15364630	.	CTTC	TTTC	787.073	PASS	AB=0.268536;ABP=3869.14;AC=47;AF=0.252688;AN=186;AO=2262;CIGAR=1X3M;DP=12296;DPB=12296;DPRA=1.9895;EPP=4871.55;EPPR=17374.8;GTI=41;LEN=1;MEANALT=1.96875;MQM=21.3603;MQMR=21.7419;NS=93;NUMALT=1;ODDS=0.731096;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48313;QR=283099;RO=8004;RPL=2257;RPP=4871.55;RPPR=17383.5;RPR=5;RUN=1;SAF=0;SAP=4914.88;SAR=2262;SRF=1;SRP=17374.8;SRR=8003;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:39,13:39:1391:13:260:-4.26912,0,-52.9156	0/1:277:146,82:146:5164:82:1661:-59.0921,0,-189.092	0/1:243:132,60:132:4690:60:1201:-34.1918,0,-176.979	0/0:137:135,1:135:4811:1:36:0,-37.7526,-271.049	0/0:94:93,0:93:3286:0:0:0,-27.9958,-171.347	0/0:78:78,0:78:2752:0:0:0,-23.4803,-142.855	0/0:109:109,0:109:3860:0:0:0,-32.8123,-220.46	0/1:253:144,62:144:5090:62:1256:-34.3882,0,-194.389	0/1:189:72,58:72:2514:58:1174:-50.959,0,-88.4313	0/1:244:113,52:113:3975:52:1188:-43.3233,0,-179.047	0/1:138:84,31:84:2968:31:708:-20.7749,0,-136.766	0/0:86:86,0:86:3074:0:0:0,-25.8886,-152.939	0/1:114:53,32:53:1869:32:641:-23.5319,0,-67.8908	0/1:151:80,38:80:2802:38:760:-22.6953,0,-113.159	0/0:51:51,0:51:1810:0:0:0,-15.3525,-104.238	0/1:100:66,18:66:2333:18:360:-2.30924,0,-99.1581	0/1:122:77,20:77:2705:20:402:-1.63167,0,-104.204	0/0:45:45,0:45:1613:0:0:0,-13.5463,-83.1511	0/1:63:47,16:47:1675:16:321:-5.79196,0,-63.7377	0/1:472:226,136:226:8051:136:3115:-135.192,0,-358.63	0/1:280:145,94:145:5100:94:1883:-72.2888,0,-194.32	0/0:57:57,0:57:2012:0:0:0,-17.1587,-124.237	0/1:127:56,34:56:1975:34:774:-33.585,0,-85.2248	0/0:192:112,4:112:3976:4:89:0,-27.9832,-202.725	0/1:154:73,33:73:2602:33:660:-18.6435,0,-97.6655	0/0:186:184,2:184:6427:2:61:0,-50.6837,-393.936	0/1:254:160,94:160:5623:94:1881:-67.7947,0,-209.33	0/1:58:41,17:41:1448:17:340:-8.73792,0,-53.7412	0/1:368:142,119:142:5049:119:2942:-154.074,0,-234.302	0/1:225:108,71:108:3804:71:1422:-55.041,0,-138.593	0/1:272:169,48:169:5959:48:1083:-19.3066,0,-289.919	.:.:.:.:.:.:.:.	0/0:15:14,0:14:502:0:0:0,-4.21442,-25.1531	0/0:4:3,0:3:107:0:0:0,-0.90309,-4.98724	0/0:12:9,1:9:324:1:20:0,-1.45586,-14.6277	0/0:6:6,0:6:209:0:0:0,-1.80618,-10.9043	0/1:361:188,74:188:6659:74:1851:-67.0455,0,-332.136	0/0:100:100,0:100:3535:0:0:0,-30.103,-176.246	0/1:150:88,35:88:3108:35:700:-16.5976,0,-125.557	0/1:14:7,6:7:251:6:120:-5.33299,0,-9.41101	0/1:241:156,85:156:5487:85:1701:-57.8493,0,-201.797	0/0:36:36,0:36:1284:0:0:0,-10.8371,-64.1401	0/1:308:135,74:135:4724:74:1502:-51.1201,0,-176.517	0/1:151:87,34:87:3081:34:790:-24.1795,0,-141.12	0/0:93:65,0:65:2293:0:0:0,-19.5669,-131.153	0/0:82:82,0:82:2903:0:0:0,-24.6845,-178.919	0/1:182:99,42:99:3489:42:847:-22.0156,0,-144.007	0/0:121:117,2:117:4129:2:50:0,-31.8431,-230.933	0/0:70:69,1:69:2454:1:20:0,-19.371,-137.435	0/1:232:95,93:95:3379:93:2111:-108.427,0,-136.113	0/0:72:71,1:71:2510:1:29:0,-19.0749,-153.679	0/0:33:26,3:26:917:3:69:0,-3.29952,-46.8895	0/0:186:186,0:186:6549:0:0:0,-55.9916,-331.342	0/1:71:36,12:36:1273:12:300:-9.32387,0,-65.873	0/0:29:22,1:22:780:1:20:0,-5.38262,-39.2626	0/1:274:149,68:149:5273:68:1364:-39.1828,0,-214.951	0/0:44:44,0:44:1534:0:0:0,-13.2453,-88.6841	0/1:20:9,7:9:310:7:169:-8.67486,0,-14.8776	0/0:25:25,0:25:877:0:0:0,-7.52575,-58.3577	0/1:200:68,56:68:2409:56:1121:-48.5296,0,-85.5286	0/0:121:120,0:120:4265:0:0:0,-36.1236,-249.559	0/1:5:3,2:3:108:2:44:-2.10557,0,-4.87567	0/0:82:82,0:82:2898:0:0:0,-24.6845,-180.871	0/0:194:191,1:191:6714:1:23:0,-55.986,-390.407	0/1:153:72,40:72:2526:40:820:-29.1847,0,-95.3723	0/1:97:55,42:55:1960:42:947:-44.9735,0,-82.8112	0/0:129:129,0:129:4523:0:0:0,-38.8329,-268.794	0/0:124:122,2:122:4310:2:44:0,-33.717,-239.62	0/0:49:48,1:48:1691:1:20:0,-13.0493,-83.1647	0/0:85:83,2:83:2971:2:56:0,-20.719,-143.523	0/0:72:71,0:71:2541:0:0:0,-21.3731,-160.251	0/1:42:16,5:16:558:5:112:-2.42243,0,-23.5847	0/0:112:60,0:60:2125:0:0:0,-18.0618,-106.783	0/1:130:72,26:72:2556:26:522:-10.517,0,-105.318	0/1:456:194,165:194:6867:165:3316:-145.445,0,-235.868	0/0:85:81,4:81:2903:4:92:0,-18.1873,-157.797	0/0:118:118,0:118:4163:0:0:0,-35.5215,-209.055	0/0:112:110,2:110:3917:2:40:0,-30.4832,-191.205	0/1:13:8,2:8:281:2:40:-0.0799991,0,-11.2596	0/0:109:106,2:106:3752:2:56:0,-27.7947,-181.7	0/0:79:79,0:79:2815:0:0:0,-23.7814,-148.207	0/0:209:208,0:208:7364:0:0:0,-62.6142,-419.968	0/1:184:106,38:106:3726:38:871:-24.8172,0,-167.838	0/0:51:51,0:51:1796:0:0:0,-15.3525,-100.726	0/1:124:67,21:67:2376:21:474:-10.5256,0,-109.752	0/1:243:124,59:124:4414:59:1352:-50.7018,0,-196.212	0/1:58:25,10:25:879:10:201:-4.88545,0,-34.4645	0/0:69:69,0:69:2463:0:0:0,-20.7711,-122.81	0/0:59:59,0:59:2106:0:0:0,-17.7608,-104.81	0/1:82:44,22:44:1560:22:440:-13.8554,0,-58.1585	0/1:161:82,45:82:2893:45:900:-30.7057,0,-114.136	0/1:169:72,40:72:2551:40:905:-37.2079,0,-115.768	0/0:69:67,0:67:2369:0:0:0,-20.169,-134.553	0/0:97:95,1:95:3400:1:36:0,-25.6823,-189.252
chr07	15364650	.	T	C	57453.9	PASS	AB=0.502152;ABP=3.36541;AC=134;AF=0.72043;AN=186;AO=7895;CIGAR=1X;DP=12349;DPB=12349;DPRA=0;EPP=17146.8;EPPR=9670.41;GTI=36;LEN=1;MEANALT=1.02151;MQM=21.7593;MQMR=16.8484;NS=93;NUMALT=1;ODDS=0.372842;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281486;QR=158634;RO=4452;RPL=7895;RPP=17146.8;RPPR=9670.41;RPR=0;RUN=1;SAF=0;SAP=17146.8;SAR=7895;SRF=0;SRP=9670.41;SRR=4452;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:48,38:48:1689:38:1360:-40.8949,0,-34.5606	0/1:279:136,143:136:4826:143:5089:-168.2,0,-117.96	0/1:246:116,130:116:4113:130:4641:-157.365,0,-87.7482	1/1:136:3,133:3:108:133:4753:-264.877,-35.5078,0	1/1:94:1,93:1:36:93:3321:-170.362,-27.2978,0	1/1:79:3,76:3:93:76:2705:-135.015,-18.6744,0	1/1:107:0,107:0:0:107:3833:-216.586,-32.2102,0	0/1:258:115,143:115:4109:143:5111:-178.102,0,-84.7553	0/1:193:123,70:123:4344:70:2459:-66.1873,0,-109.892	0/1:247:136,111:136:4853:111:3942:-150.579,0,-128.447	0/1:140:56,84:56:2008:84:2977:-129.042,0,-51.0771	1/1:88:1,87:1:36:87:3109:-153.48,-25.4916,0	0/1:117:65,52:65:2336:52:1853:-56.8251,0,-54.1249	0/1:151:74,77:74:2660:77:2760:-98.0239,0,-56.8781	1/1:53:1,52:1:36:52:1863:-105.567,-14.8559,0	0/1:100:35,65:35:1260:65:2319:-92.6849,0,-19.7092	0/1:125:49,76:49:1760:76:2716:-94.8352,0,-27.242	1/1:44:0,44:0:0:44:1569:-81.1876,-13.2453,0	0/1:64:18,46:18:640:46:1633:-61.443,0,-11.7874	0/1:475:253,222:253:9033:222:7921:-317.958,0,-273.675	0/1:286:142,144:142:5042:144:5121:-179.712,0,-131.318	1/1:57:0,57:0:0:57:2029:-124.39,-17.1587,0	0/1:125:73,51:73:2605:51:1828:-65.3506,0,-78.7926	0/1:190:80,110:80:2856:110:3903:-148.426,0,-19.2622	0/1:156:82,74:82:2917:74:2647:-84.5346,0,-56.8609	1/1:184:5,179:5:176:179:6322:-380.4,-46.4239,0	0/1:262:104,158:104:3697:158:5622:-202.952,0,-104.221	0/1:58:17,41:17:612:41:1446:-53.7094,0,-13.176	0/1:373:232,141:232:8282:141:5045:-198.88,0,-328.262	0/1:225:119,105:119:4226:105:3757:-119.52,0,-105.164	0/1:267:103,164:103:3680:164:5795:-264.168,0,-78.7173	.:.:.:.:.:.:.:.	1/1:15:1,14:1:36:14:496:-24.2371,-3.51643,0	1/1:4:1,3:1:36:3:104:-4.09669,-0.205101,0	0/1:11:3,8:3:108:8:288:-11.5574,0,-0.410216	1/1:6:0,6:0:0:6:212:-10.927,-1.80618,0	0/1:367:181,186:181:6457:186:6583:-296.337,0,-221.036	1/1:101:2,99:2:72:99:3510:-173.255,-28.5059,0	0/1:149:61,88:61:2180:88:3125:-118.632,0,-42.1053	0/1:14:7,7:7:252:7:252:-9.22613,0,-7.61188	0/1:244:90,154:90:3175:154:5493:-198.498,0,-84.3209	1/1:34:0,34:0:0:34:1205:-60.4053,-10.235,0	0/1:308:173,135:173:6177:135:4828:-147.577,0,-130.317	0/1:150:64,86:64:2288:86:3077:-130.641,0,-58.7797	0/1:94:28,66:28:1000:66:2368:-105.329,0,-4.08599	1/1:80:0,80:0:0:80:2853:-175.344,-24.0824,0	0/1:187:87,100:87:3093:100:3581:-132.445,0,-61.2295	1/1:120:3,117:3:108:117:4185:-229.741,-30.4991,0	1/1:70:1,69:1:32:69:2465:-137.527,-19.7773,0	0/1:235:139,96:139:4949:96:3402:-123.71,0,-172.64	1/1:72:2,70:2:72:70:2452:-149.092,-17.7611,0	0/1:33:7,26:7:248:26:913:-42.5656,0,-1.06052	1/1:183:0,183:0:0:183:6509:-325.709,-55.0885,0	0/1:71:36,35:36:1280:35:1252:-57.2499,0,-41.9391	1/1:29:7,22:7:248:22:792:-33.6169,-1.44502,0	0/1:273:127,146:127:4532:146:5187:-192.301,0,-95.959	1/1:44:1,43:1:36:43:1525:-85.6218,-12.1466,0	0/1:19:11,8:11:384:8:288:-12.5162,0,-15.6269	1/1:25:0,25:0:0:25:891:-58.754,-7.52575,0	0/1:201:134,67:134:4781:67:2389:-60.7428,0,-112.2	1/1:121:0,121:0:0:121:4331:-251.761,-36.4246,0	0/1:5:2,3:2:72:3:108:-4.87567,0,-2.64203	1/1:81:0,81:0:0:81:2890:-179.237,-24.3834,0	1/1:189:2,187:2:72:187:6647:-380.775,-53.4967,0	0/1:154:83,71:83:2930:71:2548:-82.066,0,-66.6655	0/1:99:45,54:45:1604:54:1920:-80.0662,0,-58.2353	1/1:128:0,128:0:0:128:4580:-268.255,-38.5318,0	1/1:120:1,119:1:36:119:4210:-234.884,-33.8447,0	1/1:49:1,48:1:36:48:1728:-83.079,-12.7611,0	1/1:86:3,83:3:104:83:2980:-142.441,-19.9055,0	1/1:74:3,71:3:104:71:2522:-154.844,-17.0332,0	0/1:42:26,16:26:932:16:560:-17.4044,0,-21.5767	0/1:113:54,59:54:1920:59:2124:-71.2837,0,-14.7174	0/1:132:61,71:61:2192:71:2544:-93.9572,0,-41.1763	0/1:466:276,190:276:9788:190:6786:-197.171,0,-262.584	1/1:85:4,81:4:144:81:2889:-156.463,-17.1557,0	1/1:116:0,116:0:0:116:4144:-205.798,-34.9195,0	1/1:111:2,109:2:72:109:3908:-189.03,-29.6346,0	0/1:12:5,7:5:165:7:252:-9.02994,0,-2.77862	1/1:109:3,106:3:108:106:3804:-180.856,-26.8278,0	1/1:77:0,77:0:0:77:2715:-143.72,-23.1793,0	1/1:209:2,207:2:72:207:7345:-415.749,-60.4493,0	0/1:184:79,105:79:2794:105:3756:-155.671,0,-70.6862	1/1:50:1,49:1:36:49:1760:-96.9387,-13.7536,0	0/1:122:58,64:58:2076:64:2285:-93.4653,0,-50.7947	0/1:244:123,121:123:4400:121:4340:-172.928,0,-123.17	0/1:58:33,25:33:1184:25:900:-27.8244,0,-20.6133	1/1:69:1,68:1:36:68:2444:-120.22,-19.7721,0	1/1:58:0,58:0:0:58:2088:-103.063,-17.4597,0	0/1:81:38,43:38:1364:43:1544:-52.0748,0,-29.5471	0/1:166:85,81:85:3056:81:2903:-101.071,0,-70.185	0/1:173:102,71:102:3652:71:2541:-95.4304,0,-100.764	1/1:67:2,65:2:72:65:2336:-129.821,-17.7029,0	1/1:95:1,94:1:36:94:3380:-188.529,-25.1172,0
chr07	15438384	.	T	A	119538	PASS	AB=0.548707;ABP=92.2773;AC=136;AF=0.723404;AN=188;AO=5691;CIGAR=1X;DP=7662;DPB=7662;DPRA=0;EPP=12050.1;EPPR=4149.34;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9759;MQMR=59.999;NS=94;NUMALT=1;ODDS=0.0768655;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203371;QR=70255;RO=1969;RPL=5655;RPP=12050.1;RPPR=4149.34;RPR=36;RUN=1;SAF=0;SAP=12360.9;SAR=5691;SRF=0;SRP=4278.64;SRR=1969;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/1:65:24,41:24:849:41:1466:-112.669,0,-57.1609	0/1:173:83,90:83:2943:90:3216:-237.585,0,-213.027	0/1:191:76,115:76:2712:115:4115:-313.037,0,-186.828	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:6:0,6:0:0:6:198:-18.1433,-1.80618,0	1/1:28:0,28:0:0:28:993:-89.6825,-8.42884,0	0/1:140:64,76:64:2272:76:2706:-201.639,0,-162.599	1/1:77:0,77:0:0:77:2755:-248.191,-23.1793,0	0/1:53:33,20:33:1184:20:716:-48.8131,0,-90.9137	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:76:0,76:0:0:76:2694:-242.703,-22.8783,0	0/1:55:24,31:24:860:31:1089:-81.7607,0,-61.1652	0/1:67:34,33:34:1216:33:1152:-83.8146,0,-89.5776	0/1:64:29,35:29:1040:35:1251:-93.6284,0,-74.6484	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0	1/1:43:0,43:0:0:43:1544:-139.208,-12.9443,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:91:38,53:38:1356:53:1904:-144.244,0,-94.9468	1/1:163:0,163:0:0:163:5823:-524.184,-49.0679,0	0/1:74:53,21:53:1888:21:742:-44.8274,0,-147.922	1/1:89:0,89:0:0:89:3204:-288.582,-26.7917,0	0/1:20:7,13:7:248:13:462:-35.8956,0,-16.6436	0/1:53:27,26:27:968:26:932:-68.2443,0,-71.4828	0/1:242:87,154:87:3112:154:5491:-421.448,0,-207.439	1/1:198:0,198:0:0:198:7085:-637.55,-59.6039,0	1/1:26:0,26:0:0:26:921:-83.2052,-7.82678,0	0/1:244:113,131:113:4032:131:4693:-349.078,0,-289.618	1/1:152:8,144:8:284:144:5140:-436.839,-19.8532,0	1/1:90:0,90:0:0:90:3224:-290.326,-27.0927,0	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	1/1:15:0,15:0:0:15:540:-48.8914,-4.51545,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:11:6,5:6:216:5:165:-11.8623,0,-16.4792	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:183:83,100:83:2964:100:3587:-267.947,0,-211.905	0/1:103:53,50:53:1880:50:1792:-130.556,0,-138.473	0/1:33:21,12:21:752:12:432:-29.2872,0,-58.0714	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:83:31,52:31:1103:52:1863:-142.963,0,-74.5943	0/1:18:4,14:4:144:14:504:-40.2796,0,-7.89508	0/1:108:38,70:38:1360:70:2504:-193.101,0,-90.1894	0/1:50:18,32:18:644:32:1148:-88.5783,0,-43.2391	0/1:73:29,44:29:1036:44:1560:-118.715,0,-71.5787	1/1:143:0,143:0:0:143:5115:-460.482,-43.0473,0	1/1:88:0,88:0:0:88:3151:-283.815,-26.4906,0	0/1:218:94,124:94:3368:124:4443:-334.409,0,-237.711	1/1:93:0,93:0:0:93:3315:-298.567,-27.9958,0	0/1:153:62,91:62:2216:91:3272:-248.641,0,-153.647	0/1:75:35,40:35:1252:40:1436:-106.96,0,-90.4078	0/1:13:2,11:2:72:11:384:-30.9813,0,-2.92333	0/1:107:34,73:34:1209:73:2606:-202.491,0,-76.9039	1/1:57:1,56:1:36:56:2004:-177.035,-13.5604,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:136:62,74:62:2216:74:2622:-195.287,0,-158.765	0/1:30:16,14:16:576:14:500:-36.3053,0,-43.1441	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	1/1:12:0,12:0:0:12:419:-38.0427,-3.61236,0	1/1:90:1,89:1:36:89:3192:-283.905,-23.4944,0	1/1:114:1,113:1:36:113:4039:-360.1,-30.7191,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:248:0,248:0:0:248:8883:-799.451,-74.6554,0	1/1:140:4,136:4:144:136:4880:-426.038,-28.8306,0	0/1:54:19,35:19:680:35:1252:-96.7295,0,-45.2735	1/1:96:0,96:0:0:96:3431:-309.003,-28.8989,0	0/1:110:32,78:32:1144:78:2804:-219.486,0,-70.1562	0/1:90:49,41:49:1728:41:1451:-103.792,0,-128.712	1/1:26:0,26:0:0:26:918:-82.935,-7.82678,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:53:27,25:27:960:25:900:-65.3076,0,-70.703	0/1:11:4,7:4:144:7:243:-18.8957,0,-10.0023	1/1:138:0,138:0:0:138:4915:-442.501,-41.5421,0	0/1:84:39,45:39:1380:45:1608:-119.724,0,-99.2122	1/1:130:0,130:0:0:130:4658:-419.38,-39.1339,0	1/1:180:1,179:1:36:179:6428:-575.006,-50.5871,0	0/1:72:41,31:41:1464:31:1116:-79.0775,0,-110.382	1/1:92:0,92:0:0:92:3276:-295.059,-27.6948,0	1/1:13:0,13:0:0:13:449:-40.7375,-3.91339,0	1/1:82:0,82:0:0:82:2918:-262.855,-24.6845,0	0/1:97:44,53:44:1580:53:1896:-141.718,0,-113.292	0/1:254:128,126:128:4564:126:4480:-326.908,0,-334.466	0/1:77:33,44:33:1176:44:1576:-118.952,0,-82.9685	0/1:73:39,34:39:1396:34:1220:-88.1316,0,-103.964	0/1:37:17,20:17:608:20:720:-53.9907,0,-43.9139	0/1:111:54,57:54:1936:57:2017:-148.387,0,-141.102	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	1/1:59:0,59:0:0:59:2101:-189.358,-17.7608,0	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	0/1:92:45,47:45:1595:47:1664:-122.339,0,-116.145	0/1:77:48,29:48:1712:29:1035:-70.2838,0,-131.186	1/1:185:0,185:0:0:185:6612:-595.158,-55.6906,0	1/1:84:0,84:0:0:84:3015:-271.579,-25.2865,0
chr07	15653667	.	GC	GT	136853	PASS	AB=0.481235;ABP=19.0653;AC=134;AF=0.712766;AN=188;AO=6663;CIGAR=1M1X;DP=9419;DPB=9420;DPRA=0;EPP=14471.5;EPPR=5952.84;GTI=0;LEN=1;MEANALT=1.17021;MQM=59.9081;MQMR=59.9843;NS=94;NUMALT=1;ODDS=0.741689;PAIRED=0;PAIREDR=0;PAO=1;PQA=34;PQR=34;PRO=1;QA=237776;QR=96119;RO=2740;RPL=6663;RPP=14471.5;RPPR=5952.84;RPR=0;RUN=1;SAF=6663;SAP=14471.5;SAR=0;SRF=2740;SRP=5952.84;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:26,38:26:902:38:1360:-102.989,0,-61.8686	0/1:101:55,46:55:1919:46:1643:-117.746,0,-142.578	0/1:222:125,97:125:4380:97:3475:-246.132,0,-327.55	0/1:205:102,103:102:3600:103:3688:-270.409,0,-262.497	1/1:72:0,71:0:0:71:2534:-227.297,-21.3731,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:61:0,61:0:0:61:2160:-194.665,-18.3628,0	0/1:148:74,74:74:2601:74:2600:-189.693,0,-189.786	1/1:369:0,368:0:0:368:13020:-1171.27,-110.779,0	0/1:55:28,26:28:962:26:932:-67.6796,0,-70.3686	1/1:37:0,37:0:0:37:1303:-117.569,-11.1381,0	1/1:69:0,68:0:0:68:2444:-219.995,-20.47,0	0/1:60:34,26:34:1192:26:928:-65.7763,0,-89.521	0/1:100:61,39:61:2110:39:1379:-94.0339,0,-160.034	0/1:52:30,22:30:1076:22:784:-55.2304,0,-81.4995	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:29:0,29:0:0:29:1032:-93.171,-8.72987,0	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:191:114,77:114:4048:77:2764:-191.444,0,-306.951	1/1:82:0,82:0:0:82:2922:-263.213,-24.6845,0	0/1:202:127,75:127:4421:75:2672:-179.915,0,-337.256	1/1:127:3,124:3:98:124:4438:-389.889,-29.0875,0	0/1:46:18,28:18:628:28:1004:-76.8273,0,-42.997	0/1:101:51,50:51:1788:50:1779:-129.901,0,-130.796	0/1:261:117,144:117:4085:144:5160:-385.967,0,-289.268	1/1:276:0,276:0:0:276:9872:-888.419,-83.0843,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:314:148,165:148:5200:165:5877:-434.402,0,-373.56	1/1:165:8,157:8:288:157:5578:-475.871,-23.4025,0	1/1:132:1,131:1:36:131:4679:-417.673,-36.1377,0	0/1:29:4,25:4:144:25:896:-72.2281,0,-4.58375	1/1:45:0,44:0:0:44:1546:-139.107,-13.2453,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:13:9,4:9:309:4:144:-9.40023,0,-24.2284	0/1:31:20,11:20:690:11:396:-26.6508,0,-53.0865	0/1:118:63,55:63:2189:55:1968:-141.874,0,-161.751	0/1:119:60,58:60:2106:58:2071:-150.779,0,-153.927	0/1:44:27,17:27:950:17:604:-41.4453,0,-72.5687	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:117:63,54:63:2194:54:1923:-138.124,0,-162.498	0/1:30:22,8:22:774:8:288:-17.2365,0,-60.9506	0/1:213:90,123:90:3174:123:4399:-331.818,0,-221.766	0/1:32:14,18:14:492:18:648:-49.0138,0,-34.9793	0/1:34:16,17:16:555:17:604:-44.3966,0,-39.9838	1/1:164:0,163:0:0:163:5844:-525.82,-49.0679,0	1/1:184:2,181:2:72:181:6494:-577.705,-48.6116,0	0/1:196:97,99:97:3388:99:3519:-257.914,0,-246.131	1/1:124:0,124:0:0:124:4443:-400.016,-37.3277,0	0/1:128:55,73:55:1926:73:2595:-195.266,0,-135.081	0/1:101:49,52:49:1734:52:1855:-136.825,0,-125.939	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:160:80,80:80:2839:80:2867:-210.101,0,-207.583	1/1:68:0,68:0:0:68:2410:-217.146,-20.47,0	0/1:23:11,12:11:394:12:432:-32.2975,0,-28.8778	0/1:187:105,82:105:3658:82:2917:-206.471,0,-273.132	0/1:49:27,22:27:940:22:792:-56.8552,0,-70.1617	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:33:1,32:1:36:32:1152:-100.391,-6.33572,0	1/1:87:1,86:1:36:86:3040:-270.231,-22.5913,0	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	1/1:217:0,217:0:0:217:7783:-700.498,-65.3235,0	1/1:178:1,177:1:23:177:6337:-568.1,-51.2834,0	0/1:54:19,35:19:656:35:1260:-97.4495,0,-43.1049	1/1:116:2,113:2:70:113:4037:-356.866,-28.3276,0	0/1:225:113,112:113:3946:112:3999:-292.265,0,-287.602	0/1:165:105,60:105:3669:60:2160:-144.939,0,-280.744	1/1:26:1,25:1:36:25:896:-77.3617,-4.22851,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:36:21,15:21:743:15:536:-37.7377,0,-56.3554	0/1:26:14,12:14:492:12:428:-31.032,0,-36.7852	1/1:148:0,147:0:0:147:5250:-472.277,-44.2514,0	0/1:55:29,26:29:1035:26:936:-67.9804,0,-76.9073	1/1:376:1,375:1:23:375:13271:-1191.32,-110.887,0	1/1:171:0,170:0:0:170:6071:-546.126,-51.1751,0	0/1:168:84,83:84:2945:83:2972:-217.081,0,-214.651	1/1:103:2,101:2:72:101:3606:-317.909,-24.1694,0	1/1:23:0,23:0:0:23:823:-74.393,-6.92369,0	1/1:143:0,143:0:0:143:5112:-460.223,-43.0473,0	0/1:109:58,51:58:2039:51:1827:-131.876,0,-150.968	0/1:213:101,111:101:3568:111:3943:-290.902,0,-257.17	0/1:43:31,12:31:1085:12:432:-26.2769,0,-85.0121	0/1:48:26,22:26:932:22:788:-56.7945,0,-69.7496	0/1:38:22,16:22:766:16:572:-40.3743,0,-57.8196	0/1:102:51,51:51:1787:51:1828:-134.095,0,-130.405	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:77:1,76:1:36:76:2726:-241.984,-19.581,0	0/1:36:16,20:16:563:20:716:-53.9302,0,-40.1618	0/1:83:46,37:46:1636:37:1322:-94.2936,0,-122.543	0/1:45:31,14:31:1091:14:500:-31.788,0,-84.952	1/1:139:0,139:0:0:139:4964:-446.901,-41.8432,0	1/1:76:0,76:0:0:76:2704:-243.602,-22.8783,0
chr07	15710258	.	T	C	70766.2	PASS	AB=0.447398;ABP=176.632;AC=40;AF=0.212766;AN=188;AO=3247;CIGAR=1X;DP=15557;DPB=15557;DPRA=1.3231;EPP=7053.78;EPPR=26718.6;GTI=1;LEN=1;MEANALT=1.11538;MQM=59.7299;MQMR=59.9517;NS=94;NUMALT=1;ODDS=3.0198;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115527;QR=438919;RO=12303;RPL=1991;RPP=364.293;RPPR=2129.45;RPR=1256;RUN=1;SAF=1991;SAP=364.293;SAR=1256;SRF=7887;SRP=2129.45;SRR=4416;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:44,1:44:1580:1:36:0,-9.94807,-138.893	0/1:125:75,50:75:2684:50:1792:-123.934,0,-204.176	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/0:434:432,2:432:15418:2:72:0,-123.81,-1380.41	0/1:75:53,22:53:1889:22:775:-47.3359,0,-147.709	0/1:39:22,17:22:773:17:612:-43.6733,0,-58.0186	0/1:195:115,80:115:4113:80:2828:-196.057,0,-311.652	0/0:210:210,0:210:7498:0:0:0,-63.2163,-674.861	0/0:94:94,0:94:3362:0:0:0,-28.2968,-302.795	0/0:231:231,0:231:8218:0:0:0,-69.5379,-739.633	0/0:140:140,0:140:4996:0:0:0,-42.1442,-449.789	0/0:67:66,1:66:2346:1:36:0,-16.5707,-207.8	0/1:85:39,46:39:1377:46:1638:-122.12,0,-98.6391	0/1:175:94,81:94:3336:81:2849:-203.945,0,-247.777	0/1:164:87,77:87:3102:77:2743:-197.721,0,-229.993	0/0:160:160,0:160:5691:0:0:0,-48.1648,-512.267	0/0:101:101,0:101:3607:0:0:0,-30.404,-324.836	0/1:53:19,34:19:665:34:1208:-93.0715,0,-44.2182	0/1:48:27,21:27:968:21:744:-52.8349,0,-72.9879	0/1:446:232,214:232:8268:214:7645:-553.773,0,-609.823	0/1:298:180,118:180:6436:118:4145:-283.485,0,-489.576	0/1:170:64,106:64:2287:106:3753:-286.686,0,-154.859	0/0:172:171,0:171:6082:0:0:0,-51.4761,-547.126	0/1:149:134,15:134:4781:15:540:-4.08307,0,-385.593	0/0:176:176,0:176:6276:0:0:0,-52.9813,-564.937	0/1:477:267,210:267:9495:210:7424:-524.536,0,-710.835	0/0:498:498,0:498:17783:0:0:0,-149.913,-1600.07	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.734	0/1:468:282,186:282:10077:186:6644:-456.937,0,-765.977	0/0:155:155,0:155:5543:0:0:0,-46.6596,-498.995	0/0:166:166,0:166:5921:0:0:0,-49.971,-532.991	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:477:245,232:245:8722:232:8273:-600.315,0,-641.383	0/0:227:227,0:227:8121:0:0:0,-68.3338,-730.86	0/1:77:39,38:39:1396:38:1348:-98.4409,0,-102.76	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:196:127,68:127:4523:68:2412:-158.402,0,-348.285	0/0:90:90,0:90:3208:0:0:0,-27.0927,-288.944	0/0:220:220,0:220:7850:0:0:0,-66.2266,-706.146	0/0:182:182,0:182:6505:0:0:0,-54.7875,-585.533	0/0:173:173,0:173:6139:0:0:0,-52.0782,-552.609	0/0:198:198,0:198:7079:0:0:0,-59.6039,-637.169	0/0:164:164,0:164:5849:0:0:0,-49.3689,-526.52	0/1:204:124,80:124:4427:80:2833:-193.772,0,-337.192	0/1:226:141,85:141:4996:85:3052:-206.854,0,-381.758	0/1:267:146,121:146:5148:121:4313:-307.927,0,-383.088	0/1:134:85,49:85:3040:49:1723:-114.991,0,-232.636	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:131:129,1:129:4611:1:36:0,-35.8405,-411.61	0/0:63:63,0:63:2242:0:0:0,-18.9649,-202.042	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:305:305,0:305:10875:0:0:0,-91.8141,-978.654	0/0:81:80,1:80:2856:1:36:0,-20.7852,-253.68	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2343	0/1:29:11,18:11:388:18:648:-49.922,0,-26.5275	0/0:141:141,0:141:5040:0:0:0,-42.4452,-453.747	0/0:234:234,0:234:8351:0:0:0,-70.441,-751.579	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:394:392,1:392:13978:1:36:0,-115.011,-1254.24	0/1:275:140,135:140:5032:135:4810:-350.256,0,-370.241	0/0:142:142,0:142:5068:0:0:0,-42.7463,-456.267	0/0:193:193,0:193:6839:0:0:0,-58.0988,-615.579	0/0:442:441,1:441:15710:1:36:0,-129.457,-1409.89	0/1:153:59,94:59:2103:94:3330:-253.672,0,-143.481	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/0:83:83,0:83:2957:0:0:0,-24.9855,-266.362	0/0:167:166,1:166:5931:1:36:0,-46.6737,-530.297	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/1:115:54,61:54:1917:61:2180:-161.848,0,-138.187	0/1:96:47,49:47:1680:49:1755:-129.334,0,-122.588	0/0:281:281,0:281:10003:0:0:0,-84.5894,-899.964	0/0:290:290,0:290:10336:0:0:0,-87.2987,-930.159	0/1:121:81,39:81:2893:39:1404:-90.1759,0,-224.113	0/0:134:131,3:131:4700:3:108:0,-30.2628,-413.084	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:224:140,84:140:5012:84:3015:-204.127,0,-383.796	0/1:117:70,47:70:2516:47:1645:-113.113,0,-191.471	0/1:346:207,139:207:7412:139:4958:-342.16,0,-562.967	0/1:169:90,79:90:3211:79:2815:-202.693,0,-238.339	0/1:169:86,83:86:3076:83:2975:-217.085,0,-226.195	0/0:186:184,1:184:6566:1:36:0,-52.4421,-587.43	0/1:360:194,165:194:6955:165:5878:-420.587,0,-517.584	0/1:44:23,21:23:816:21:748:-54.4,0,-60.5164	0/0:90:89,1:89:3179:1:25:0,-24.5928,-283.834	0/0:85:85,0:85:3029:0:0:0,-25.5875,-272.839	0/1:75:32,43:32:1131:43:1540:-116.293,0,-79.5205	0/1:184:97,87:97:3460:87:3100:-223.817,0,-256.224	0/1:192:56,136:56:2004:136:4842:-378.039,0,-122.836	0/0:265:264,1:264:9441:1:25:0,-77.2731,-847.121	0/0:295:295,0:295:10532:0:0:0,-88.8038,-947.783
chr07	15710259	.	A	G	369031	PASS	AB=0.548748;ABP=165.392;AC=148;AF=0.787234;AN=188;AO=13674;CIGAR=1X;DP=17248;DPB=17248;DPRA=0;EPP=29695.7;EPPR=7735.62;GTI=1;LEN=1;MEANALT=1.11702;MQM=59.955;MQMR=59.6751;NS=94;NUMALT=1;ODDS=2.94341;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=484745;QR=126842;RO=3561;RPL=7897;RPP=716.735;RPPR=111.091;RPR=5777;RUN=1;SAF=7897;SAP=716.735;SAR=5777;SRF=1991;SRP=111.091;SRR=1570;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:97:1,96:1:36:96:3408:-303.339,-25.6016,0	0/1:176:71,105:71:2543:105:3764:-285.978,0,-175.733	1/1:235:0,235:0:0:235:8369:-753.22,-70.7421,0	1/1:433:0,432:0:0:432:15355:-1381.26,-130.045,0	0/1:77:24,53:24:860:53:1899:-148.008,0,-54.3846	0/1:67:32,34:32:1152:34:1207:-88.8324,0,-83.8894	0/1:194:76,118:76:2715:118:4184:-318.343,0,-186.193	1/1:342:0,342:0:0:342:12174:-1095.51,-102.952,0	1/1:184:0,184:0:0:184:6560:-590.485,-55.3895,0	1/1:234:1,233:1:36:233:8273:-740.985,-66.8427,0	1/1:140:0,140:0:0:140:4933:-444.125,-42.1442,0	1/1:177:0,177:0:0:177:6271:-564.492,-53.2823,0	0/1:186:93,93:93:3311:93:3312:-242.308,0,-242.164	0/1:173:79,94:79:2788:94:3323:-247.21,0,-199.06	0/1:166:77,89:77:2725:89:3138:-232.623,0,-195.5	1/1:167:0,167:0:0:167:5907:-531.745,-50.272,0	1/1:131:0,131:0:0:131:4664:-419.925,-39.4349,0	0/1:79:45,33:45:1595:33:1167:-81.6418,0,-120.146	0/1:89:47,42:47:1676:42:1508:-109.223,0,-124.3	0/1:450:220,230:220:7839:230:8115:-594.85,0,-570.009	0/1:297:116,181:116:4117:181:6360:-483.094,0,-281.266	0/1:174:111,63:111:3915:63:2232:-148.739,0,-300.086	1/1:172:0,172:0:0:172:6080:-547.309,-51.7772,0	0/1:150:15,135:15:540:135:4799:-386.914,0,-3.78204	1/1:179:0,179:0:0:179:6296:-566.74,-53.8844,0	0/1:473:209,264:209:7439:264:9296:-694.196,0,-527.081	1/1:500:0,499:0:0:499:17663:-1589.08,-150.214,0	1/1:93:1,92:1:36:92:3276:-291.463,-24.3975,0	0/1:463:186,277:186:6631:277:9870:-748.866,0,-457.259	1/1:164:0,164:0:0:164:5835:-525.264,-49.3689,0	1/1:169:0,169:0:0:169:6003:-540.379,-50.8741,0	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	1/1:16:0,16:0:0:16:555:-50.276,-4.81648,0	0/1:8:2,6:2:68:6:208:-16.6508,0,-4.04947	1/1:19:0,19:0:0:19:660:-59.7233,-5.71957,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:480:234,246:234:8370:246:8714:-639.739,0,-608.154	1/1:221:0,220:0:0:220:7802:-701.896,-66.2266,0	0/1:136:74,62:74:2640:62:2195:-156.875,0,-196.872	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:199:67,132:67:2400:132:4625:-356.511,0,-156.352	1/1:92:0,92:0:0:92:3275:-294.971,-27.6948,0	1/1:221:0,221:0:0:221:7803:-701.92,-66.5276,0	1/1:187:0,187:0:0:187:6625:-596.332,-56.2926,0	1/1:169:0,168:0:0:168:5960:-536.152,-50.573,0	1/1:199:0,198:0:0:198:7025:-631.95,-59.6039,0	1/1:245:0,245:0:0:245:8726:-785.3,-73.7524,0	0/1:206:78,128:78:2788:128:4554:-348.016,0,-189.126	0/1:229:89,140:89:3147:140:4950:-376.715,0,-214.474	0/1:276:127,149:127:4535:149:5254:-389.913,0,-325.166	0/1:138:53,85:53:1900:85:3022:-229.813,0,-129.696	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:215:1,212:1:36:212:7534:-674.471,-60.8809,0	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:308:0,306:0:0:306:10873:-978.118,-92.1152,0	1/1:81:1,80:1:36:80:2827:-251.07,-20.7852,0	1/1:18:0,18:0:0:18:607:-54.8889,-5.41854,0	0/1:28:19,9:19:680:9:315:-20.2584,0,-53.1003	1/1:138:0,138:0:0:138:4877:-439.085,-41.5421,0	1/1:235:0,235:0:0:235:8347:-751.24,-70.7421,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:397:1,395:1:36:395:13926:-1249.49,-115.969,0	0/1:276:136,140:136:4850:140:4986:-365.805,0,-353.527	1/1:147:0,147:0:0:147:5224:-470.3,-44.2514,0	1/1:192:0,192:0:0:192:6792:-611.36,-57.7978,0	1/1:434:1,433:1:36:433:15299:-1372.91,-127.049,0	0/1:154:93,61:93:3319:61:2136:-146.146,0,-252.395	1/1:67:0,67:0:0:67:2353:-212.029,-20.169,0	1/1:136:0,136:0:0:136:4847:-436.35,-40.9401,0	1/1:166:1,165:1:36:165:5816:-519.957,-46.3727,0	1/1:33:0,33:0:0:33:1171:-105.697,-9.93399,0	0/1:185:88,97:88:3148:97:3456:-255.563,0,-227.855	0/1:196:95,101:95:3366:101:3597:-264.934,0,-243.948	1/1:278:0,278:0:0:278:9816:-883.366,-83.6863,0	1/1:287:0,287:0:0:287:10233:-920.898,-86.3956,0	0/1:170:67,103:67:2400:103:3660:-278.425,0,-165.022	1/1:212:5,207:5:180:207:7388:-648.408,-47.2663,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:227:87,140:87:3124:140:4996:-381.37,0,-213.03	0/1:185:76,109:76:2712:109:3880:-293.668,0,-188.634	0/1:347:139,208:139:4966:208:7352:-557.277,0,-342.577	0/1:173:81,92:81:2896:92:3268:-242.264,0,-208.776	0/1:172:85,87:85:3002:87:3115:-228.799,0,-218.611	1/1:189:0,189:0:0:189:6711:-604.068,-56.8947,0	0/1:360:162,198:162:5704:198:7035:-524.845,0,-404.997	0/1:55:28,27:28:995:27:968:-70.8807,0,-73.3074	1/1:177:0,177:0:0:177:6273:-564.671,-53.2823,0	1/1:186:0,186:0:0:186:6603:-594.351,-55.9916,0	0/1:74:43,31:43:1517:31:1104:-77.3944,0,-114.544	0/1:182:86,96:86:3076:96:3389:-250.441,0,-222.259	0/1:194:137,57:137:4889:57:2001:-121.962,0,-381.67	1/1:263:0,263:0:0:263:9195:-827.467,-79.1709,0	1/1:294:0,293:0:0:293:10442:-939.33,-88.2018,0
chr07	15710287	.	CC	CT	34046	PASS	AB=0.473329;ABP=24.0911;AC=38;AF=0.204301;AN=186;AO=1623;CIGAR=1M1X;DP=7748;DPB=7748;DPRA=1.13193;EPP=1137.9;EPPR=2760.83;GTI=0;LEN=1;MEANALT=1.24444;MQM=59.3192;MQMR=59.9038;NS=93;NUMALT=1;ODDS=2.69761;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58188;QR=212066;RO=6094;RPL=1272;RPP=1137.9;RPPR=2760.83;RPR=351;RUN=1;SAF=0;SAP=3527.31;SAR=1623;SRF=0;SRP=13236;SRR=6094;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:56:56,0:56:1977:0:0:0,-16.8577,-178.203	0/1:60:37,23:37:1270:23:824:-56.0149,0,-96.5335	0/0:119:118,0:118:4119:0:0:0,-35.5215,-370.536	0/0:205:203,0:203:7126:0:0:0,-61.1091,-641.039	0/1:31:21,10:21:736:10:360:-23.2534,0,-57.229	0/1:27:12,15:12:421:15:532:-40.0853,0,-30.0952	0/1:20:14,6:14:485:6:216:-13.7695,0,-37.9575	0/0:148:147,0:147:5096:0:0:0,-44.2514,-458.41	0/0:102:102,0:102:3526:0:0:0,-30.7051,-317.549	0/0:86:84,1:84:2949:1:36:0,-22.3491,-261.817	0/0:56:55,1:55:1942:1:36:0,-13.2594,-171.456	0/0:118:118,0:118:4084:0:0:0,-35.5215,-367.752	0/1:110:55,52:55:1941:52:1868:-135.774,0,-142.393	0/1:51:22,29:22:786:29:1044:-78.8998,0,-55.7121	0/1:87:47,40:47:1581:40:1436:-103.303,0,-116.333	0/0:99:99,0:99:3344:0:0:0,-29.802,-301.173	0/0:29:29,0:29:1018:0:0:0,-8.72987,-91.9308	0/1:26:16,10:16:561:10:360:-24.9175,0,-42.9918	0/1:45:19,26:19:654:26:936:-70.9494,0,-45.634	0/1:284:138,143:138:4898:143:5129:-376.788,0,-356.025	0/1:153:95,58:95:3310:58:2076:-141.03,0,-252.062	0/1:83:28,55:28:993:55:1976:-152.993,0,-64.6403	0/0:109:109,0:109:3852:0:0:0,-32.8123,-346.874	0/0:34:33,1:33:1142:1:36:0,-6.63674,-99.484	0/0:115:115,0:115:3994:0:0:0,-34.6184,-359.648	0/1:248:129,119:129:4513:119:4255:-308.405,0,-331.622	0/0:259:258,0:258:8904:0:0:0,-77.6657,-800.993	0/0:47:47,0:47:1600:0:0:0,-14.1484,-144.281	0/1:212:110,101:110:3834:101:3631:-262.905,0,-281.384	0/0:51:51,0:51:1751:0:0:0,-15.3525,-157.866	0/0:63:63,0:63:2168:0:0:0,-18.9649,-195.381	0/0:18:18,0:18:620:0:0:0,-5.41854,-56.1204	0/0:10:10,0:10:335:0:0:0,-3.0103,-30.4738	0/1:3:2,1:2:61:1:36:-2.69518,0,-4.89014	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.575	0/0:11:11,0:11:375:0:0:0,-3.31133,-34.0765	0/1:224:116,108:116:4055:108:3880:-281.286,0,-297.707	0/0:92:92,0:92:3160:0:0:0,-27.6948,-284.627	0/1:66:27,39:27:903:39:1400:-106.396,0,-61.7035	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:61:47,14:47:1604:14:500:-26.9733,0,-126.278	0/0:48:48,0:48:1692:0:0:0,-14.4494,-152.566	0/0:90:89,0:89:3100:0:0:0,-26.7917,-278.71	0/0:71:71,0:71:2451:0:0:0,-21.3731,-220.842	0/0:69:69,0:69:2356:0:0:0,-20.7711,-212.293	0/0:100:99,0:99:3496:0:0:0,-29.802,-314.491	0/0:92:91,0:91:3145:0:0:0,-27.3937,-282.913	0/1:82:47,35:47:1596:35:1260:-88.9971,0,-119.236	0/1:111:77,34:77:2722:34:1220:-76.6609,0,-211.808	0/1:81:39,40:39:1372:40:1432:-105.015,0,-99.6385	0/1:57:34,23:34:1207:23:828:-57.6629,0,-91.7762	0/0:17:17,0:17:580:0:0:0,-5.11751,-52.5177	0/0:92:92,0:92:3185:0:0:0,-27.6948,-286.871	0/0:29:29,0:29:1021:0:0:0,-8.72987,-92.2006	0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891	0/0:123:121,0:121:4235:0:0:0,-36.4246,-380.975	0/0:35:34,1:34:1196:1:36:0,-6.93777,-104.345	0/0:12:12,0:12:410:0:0:0,-3.61236,-37.1707	0/1:11:3,8:3:93:8:284:-22.5353,0,-5.36596	0/0:88:87,0:87:2997:0:0:0,-26.1896,-269.603	0/0:112:112,0:112:3936:0:0:0,-33.7154,-354.412	.:.:.:.:.:.:.:.	0/0:190:188,1:188:6593:1:36:0,-53.6562,-589.856	0/1:102:57,45:57:2003:45:1594:-112.828,0,-149.836	0/0:66:66,0:66:2245:0:0:0,-19.868,-202.306	0/0:82:82,0:82:2829:0:0:0,-24.6845,-254.847	0/0:169:169,0:169:5902:0:0:0,-50.8741,-531.2	0/1:113:42,65:42:1442:65:2332:-177.497,0,-97.5027	0/0:26:26,0:26:891:0:0:0,-7.82678,-80.4992	0/0:63:63,0:63:2219:0:0:0,-18.9649,-199.936	0/0:55:55,0:55:1891:0:0:0,-16.5566,-170.462	0/0:15:14,0:14:467:0:0:0,-4.21442,-41.9943	0/1:75:48,27:48:1671:27:964:-64.4996,0,-128.095	0/1:102:55,46:55:1947:46:1648:-117.94,0,-144.852	0/0:93:93,0:93:3215:0:0:0,-27.9958,-289.526	0/0:87:86,1:86:3015:1:36:0,-22.5913,-267.98	0/1:50:24,26:24:836:26:921:-68.0832,0,-60.4967	0/0:89:87,2:87:3081:2:72:0,-19.9549,-270.679	0/0:12:12,0:12:430:0:0:0,-3.61236,-39.0401	0/1:96:61,35:61:2155:35:1248:-83.7036,0,-165.314	0/1:77:44,33:44:1532:33:1188:-84.0493,0,-114.984	0/1:131:80,51:80:2805:51:1836:-126.019,0,-213.246	0/1:76:37,39:37:1268:39:1395:-102.945,0,-91.5374	0/1:72:36,36:36:1281:36:1296:-95.2473,0,-93.9186	0/0:44:44,0:44:1540:0:0:0,-13.2453,-138.89	0/1:153:71,82:71:2430:82:2935:-218.209,0,-172.893	0/1:14:5,9:5:161:9:324:-25.2914,0,-10.5924	0/0:92:92,0:92:3193:0:0:0,-27.6948,-287.592	0/0:106:106,0:106:3669:0:0:0,-31.9092,-330.409	0/1:30:9,21:9:311:21:756:-59.3138,0,-19.293	0/1:86:48,38:48:1609:38:1368:-97.4634,0,-119.199	0/1:102:29,73:29:1018:73:2612:-204.511,0,-61.2248	0/0:154:154,0:154:5399:0:0:0,-46.3586,-485.974	0/0:169:168,0:168:5862:0:0:0,-50.573,-527.382
chr07	15760996	.	CG	CA,TA	259103	PASS	AB=0.498608,0.500418;ABP=3.13124,3.02118;AC=131,57;AF=0.696809,0.303191;AN=188;AO=8275,3620;CIGAR=1M1X,2X;DP=11907;DPB=11907;DPRA=26.1363,1.26386;EPP=16885.8,7401.7;EPPR=11.6962;GTI=1;LEN=1,2;MEANALT=1.72527,2.06557;MQM=59.9836,59.8887;MQMR=60;NS=94;NUMALT=2;ODDS=2.44363;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=296591,126952;QR=144;RO=4;RPL=8148,3566;RPP=16885.8,7401.7;RPPR=11.6962;RPR=127,54;RUN=1,1;SAF=0,0;SAP=17971.9,7863.74;SAR=8275,3620;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,21,22:0:0:21,22:752,729:-120.634,-59.2939,-52.9722,-61.6846,0,-55.062	1/2:216:0,105,111:0:0:105,111:3768,3900:-625.103,-317.748,-286.139,-307.71,0,-274.296	1/2:166:0,90,76:0:0:90,76:3240,2664:-481.478,-217.106,-190.013,-264.727,0,-241.849	1/2:318:0,168,150:0:0:168,150:6040,5253:-920.503,-427.731,-377.158,-493.127,0,-447.972	1/1:129:0,129,0:0:0:129,0:4636,0:-417.401,-38.8329,0,-417.401,-38.8329,-417.401	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/1:191:0,191,0:0:0:191,0:6856,0:-617.101,-57.4967,0,-617.101,-57.4967,-617.101	1/2:124:0,64,60:0:0:64,60:2292,2059:-354.441,-167.516,-148.25,-187.275,0,-169.214	1/1:151:0,151,0:0:0:151,0:5416,0:-487.569,-45.4555,0,-487.569,-45.4555,-487.569	1/2:76:0,35,41:0:0:35,41:1256,1448:-220.706,-118.253,-107.717,-102.809,0,-90.467	1/1:61:0,61,0:0:0:61,0:2192,0:-197.545,-18.3628,0,-197.545,-18.3628,-197.545	1/1:80:0,80,0:0:0:80,0:2865,0:-258.085,-24.0824,0,-258.085,-24.0824,-258.085	1/2:74:0,43,31:0:0:43,31:1548,1108:-217.01,-90.6995,-77.7552,-126.669,0,-117.337	1/2:74:0,35,38:0:0:35,38:1256,1322:-210.081,-107.624,-97.0878,-102.595,0,-91.156	1/2:46:0,28,18:0:0:28,18:1008,646:-135.301,-53.0528,-44.624,-82.6075,0,-77.189	1/1:71:0,71,0:0:0:71,0:2556,0:-230.29,-21.3731,0,-230.29,-21.3731,-230.29	1/1:82:0,82,0:0:0:82,0:2944,0:-265.193,-24.6845,0,-265.193,-24.6845,-265.193	1/1:61:0,61,0:0:0:61,0:2192,0:-197.545,-18.3628,0,-197.545,-18.3628,-197.545	1/2:39:0,28,11:0:0:28,11:1008,388:-114.199,-31.9465,-23.5176,-82.6075,0,-79.2962	1/2:400:0,185,215:0:0:185,215:6629,7550:-1155.42,-614.789,-559.098,-540.989,0,-476.268	1/1:219:0,219,0:0:0:219,0:7831,0:-704.817,-65.9256,0,-704.817,-65.9256,-704.817	1/2:139:0,64,75:0:0:64,75:2304,2599:-399.585,-211.584,-192.318,-188.355,0,-165.777	1/1:107:0,105,2:0:0:105,2:3768,72:-338.763,-31.6082,0,-332.888,-25.3735,-332.286	1/2:143:0,68,75:0:0:68,75:2440,2593:-410.073,-211.04,-190.57,-199.385,0,-176.808	1/2:112:0,45,67:0:0:45,67:1601,2358:-322.777,-192.31,-178.763,-130.821,0,-110.652	1/2:486:0,276,209:0:0:276,209:9863,7355:-1402.69,-598.514,-515.43,-804.276,0,-741.36	1/1:265:0,265,0:0:0:265,0:9496,0:-854.594,-79.773,0,-854.594,-79.773,-854.594	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/2:502:0,239,263:0:0:239,263:8560,9219:-1448.58,-750.482,-678.536,-698.449,0,-619.278	1/1:142:0,141,1:0:0:141,1:5045,36:-453.834,-42.4452,0,-450.897,-39.148,-450.596	1/1:174:0,172,2:0:0:172,2:6172,70:-555.226,-51.7772,0,-549.531,-45.7319,-548.929	2/2:8:0,0,8:0:0:0,8:0,288:-26.2674,-26.2674,-26.2674,-2.40824,-2.40824,0	1/1:24:0,24,0:0:0:24,0:856,0:-77.3605,-7.22472,0,-77.3605,-7.22472,-77.3605	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:9:0,3,6:0:0:3,6:108,203:-25.6142,-16.7947,-15.8916,-9.17208,0,-7.3659	1/2:13:0,5,8:0:0:5,8:180,284:-38.1843,-23.4953,-21.9902,-15.0469,0,-12.6387	1/2:196:0,113,83:0:0:113,83:4056,2945:-571.048,-240.3,-206.284,-331.104,0,-306.118	1/2:190:0,101,87:0:0:101,87:3620,3064:-544.735,-249.505,-219.101,-295.288,0,-269.099	1/2:56:0,29,27:0:0:29,27:1036,952:-162.338,-77.8682,-69.1384,-84.824,0,-76.6962	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:347:0,124,222:0:0:124,222:4452,7853:-1002.92,-639.755,-602.428,-363.31,0,-296.481	1/2:27:0,15,12:0:0:15,12:540,422:-78.7631,-34.6971,-30.1817,-44.4211,0,-40.8087	1/2:231:0,101,130:0:0:101,130:3613,4551:-665.245,-370.629,-340.225,-294.97,0,-255.836	1/2:78:0,40,38:0:0:40,38:1440,1345:-227.29,-109.896,-97.855,-117.75,0,-106.311	1/2:54:0,31,22:0:0:31,22:1116,767:-153.433,-62.3668,-53.0349,-91.0599,0,-84.4373	1/1:137:0,137,0:0:0:137,0:4920,0:-442.949,-41.2411,0,-442.949,-41.2411,-442.949	1/1:121:0,121,0:0:0:121,0:4316,0:-388.615,-36.4246,0,-388.615,-36.4246,-388.615	1/2:225:0,117,108:0:0:117,108:4174,3784:-648.466,-308.2,-272.98,-340.619,0,-308.108	1/1:118:0,118,0:0:0:118,0:4236,0:-381.418,-35.5215,0,-381.418,-35.5215,-381.418	1/2:163:0,88,75:0:0:88,75:3160,2605:-469.902,-212.121,-185.63,-258.134,0,-235.556	1/2:266:0,143,123:0:0:143,123:5121,4244:-762.745,-345.116,-302.069,-417.98,0,-380.953	1/2:12:0,6,6:0:0:6,6:216,212:-35.2467,-17.6188,-15.8127,-17.9843,0,-16.1782	1/2:254:0,109,145:0:0:109,145:3916,5115:-736.306,-416.843,-384.031,-319.819,0,-276.17	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/2:17:0,2,15:0:0:2,15:72,526:-49.0248,-43.1489,-42.5468,-6.23466,0,-1.71921	1/2:194:0,94,100:0:0:94,100:3364,3491:-558.627,-28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chr07	15761023	.	GTT	ATG,GTG	246470	PASS	AB=0.50163,0.497804;ABP=3.17308,3.306;AC=131,57;AF=0.696809,0.303191;AN=188;AO=8171,3539;CIGAR=1X1M1X,2M1X;DP=11721;DPB=11726;DPRA=25.7275,1.23716;EPP=17746.1,7687.85;EPPR=11.6962;GTI=1;LEN=3,1;MEANALT=1.7033,2.01639;MQM=59.9749,59.9036;MQMR=60;NS=94;NUMALT=2;ODDS=2.63964;PAIRED=0,0;PAIREDR=0;PAO=15,0;PQA=512,0;PQR=0;PRO=0;QA=289489,126784;QR=139;RO=4;RPL=8171,3539;RPP=17746.1,7687.85;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=17746.1,7687.85;SAR=8171,3539;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:42:0,20,22:0:0:20,22:711,788:-122.561,-64.6221,-58.6015,-58.2959,0,-51.6732	1/2:212:0,102,110:0:0:102,110:3593,3925:-612.843,-320.326,-289.621,-292.871,0,-259.758	1/2:162:0,90,72:0:0:90,72:3160,2584:-468.287,-211.109,-184.016,-257.533,0,-235.859	1/2:315:0,165,149:0:0:165,149:5871,5348:-914.737,-436.261,-386.591,-478.552,0,-433.699	1/1:125:0,125,0:0:0:125,0:4442,0:-399.592,-37.6288,0,-399.592,-37.6288,-399.592	1/1:43:0,43,0:0:0:43,0:1529,0:-137.901,-12.9443,0,-137.901,-12.9443,-137.901	1/1:190:0,189,1:0:0:189,1:6715,36:-604.059,-56.8947,0,-601.121,-53.5974,-600.82	1/2:122:0,64,58:0:0:64,58:2259,2088:-354.677,-170.728,-151.462,-184.305,0,-166.846	1/1:151:0,150,1:0:0:150,1:5368,36:-482.892,-45.1545,0,-479.955,-41.8573,-479.653	1/2:73:0,34,39:0:0:34,39:1201,1400:-212.341,-114.537,-104.302,-98.1599,0,-86.4197	1/1:59:0,58,1:0:0:58,1:2050,36:-184.411,-17.4597,0,-181.473,-14.1625,-181.172	1/1:83:0,83,0:0:0:83,0:2939,0:-264.743,-24.9855,0,-264.743,-24.9855,-264.743	1/2:71:0,43,28:0:0:43,28:1531,1004:-207.028,-82.247,-69.3027,-125.138,0,-116.71	1/2:74:0,36,38:0:0:36,38:1274,1360:-215.031,-111.261,-100.424,-104.126,0,-92.6865	1/2:45:0,27,18:0:0:27,18:968,644:-131.824,-52.8721,-44.7442,-79.3098,0,-73.8912	1/1:71:0,71,0:0:0:71,0:2532,0:-227.811,-21.3731,0,-227.811,-21.3731,-227.811	1/1:80:0,80,0:0:0:80,0:2774,0:-249.901,-24.0824,0,-249.901,-24.0824,-249.901	1/1:59:0,59,0:0:0:59,0:2095,0:-188.819,-17.7608,0,-188.819,-17.7608,-188.819	1/2:39:0,28,11:0:0:28,11:983,388:-111.947,-31.946,-23.5172,-80.3534,0,-77.0421	1/2:393:0,179,214:0:0:179,214:6343,7665:-1142.14,-625.417,-571.533,-517.074,0,-452.654	1/1:220:0,220,0:0:0:220,0:7812,0:-702.783,-66.2266,0,-702.783,-66.2266,-702.783	1/2:137:0,64,73:0:0:64,73:2280,2616:-399.552,-213.712,-194.447,-186.196,0,-164.221	1/1:108:0,108,0:0:0:108,0:3833,0:-344.971,-32.5112,0,-344.971,-32.5112,-344.971	1/2:138:0,67,71:0:0:67,71:2367,2544:-400.601,-207.838,-187.669,-193.119,0,-171.746	1/2:111:0,45,66:0:0:45,66:1578,2368:-321.911,-193.51,-179.964,-128.754,0,-108.886	1/2:472:0,268,204:0:0:268,204:9384,7304:-1359.19,-595.683,-515.007,-763.861,0,-702.451	1/1:259:0,259,0:0:0:259,0:9152,0:-823.661,-77.9668,0,-823.661,-77.9668,-823.661	1/1:42:0,42,0:0:0:42,0:1492,0:-134.574,-12.6433,0,-134.574,-12.6433,-134.574	1/2:494:0,235,259:0:0:235,259:8330,9248:-1432.32,-753.699,-682.957,-678.972,0,-601.005	1/1:149:0,148,1:0:0:148,1:5246,36:-471.92,-44.5524,0,-468.982,-41.2552,-468.681	1/1:174:0,171,3:0:0:171,3:6038,108:-543.17,-51.4761,0,-534.357,-42.3041,-533.454	2/2:8:0,0,8:0:0:0,8:0,288:-26.2674,-26.2674,-26.2674,-2.40824,-2.40824,0	1/1:24:0,24,0:0:0:24,0:850,0:-76.82,-7.22472,0,-76.82,-7.22472,-76.82	1/1:3:0,3,0:0:0:3,0:106,0:-9.8891,-0.90309,0,-9.8891,-0.90309,-9.8891	1/2:9:0,3,6:0:0:3,6:108,216:-26.7966,-17.9843,-17.0812,-9.17208,0,-7.3659	1/2:12:0,6,6:0:0:6,6:208,216:-34.8835,-17.9843,-16.1782,-17.2523,0,-15.4461	1/2:198:0,118,80:0:0:118,80:4176,2876:-575.033,-234.994,-199.472,-340.396,0,-316.314	1/2:191:0,102,89:0:0:102,89:3614,3192:-555.11,-260.711,-230.006,-294.755,0,-267.963	1/2:56:0,29,27:0:0:29,27:1021,968:-162.426,-79.3096,-70.5797,-83.4714,0,-75.3436	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:341:0,123,218:0:0:123,218:4381,7824:-995.282,-638.202,-601.175,-357.078,0,-291.453	1/2:25:0,15,10:0:0:15,10:517,360:-71.676,-29.6887,-25.1733,-42.3407,0,-39.3304	1/2:228:0,103,125:0:0:103,125:3622,4474:-659.997,-365.201,-334.195,-295.151,0,-257.522	1/2:77:0,39,38:0:0:39,38:1376,1364:-223.262,-111.292,-99.5514,-112.005,0,-100.566	1/2:54:0,32,22:0:0:32,22:1142,784:-157.361,-64.2613,-54.6283,-93.4561,0,-86.8334	1/1:137:0,137,0:0:0:137,0:4877,0:-439.084,-41.2411,0,-439.084,-41.2411,-439.084	1/1:119:0,119,0:0:0:119,0:4207,0:-378.815,-35.8226,0,-378.815,-35.8226,-378.815	1/2:220:0,113,107:0:0:113,107:3995,3844:-639.264,-313.895,-279.878,-325.725,0,-293.515	1/1:115:0,115,0:0:0:115,0:4060,0:-365.588,-34.6185,0,-365.588,-34.6185,-365.588	1/2:159:0,86,73:0:0:86,73:3054,2628:-463.636,-214.791,-188.903,-249.202,0,-227.227	1/2:263:0,143,120:0:0:143,120:5092,4280:-763.871,-348.851,-305.804,-415.016,0,-378.892	1/2:12:0,6,6:0:0:6,6:208,216:-34.8835,-17.9843,-16.1782,-17.2523,0,-15.4461	1/2:250:0,109,141:0:0:109,141:3880,5044:-727.885,-411.658,-378.845,-316.584,0,-274.139	1/1:32:0,32,0:0:0:32,0:1150,0:-103.81,-9.63296,0,-103.81,-9.63296,-103.81	1/2:17:0,2,15:0:0:2,15:72,536:-49.8986,-44.0234,-43.4213,-6.23466,0,-1.71921	1/2:192:0,95,97:0:0:95,97:3353,3476:-556.885,-283.851,-255.253,-273.39,0,-244.19	1/2:39:0,12,27:0:0:12,27:412,968:-112.758,-79.3096,-75.6972,-33.7962,0,-25.6684	2/2:6:0,0,6:0:0:0,6:0,212:-19.4248,-19.4248,-19.4248,-1.80618,-1.80618,0	1/1:43:0,43,0:0:0:43,0:1534,0:-138.353,-12.9443,0,-138.353,-12.9443,-138.353	1/1:84:0,84,0:0:0:84,0:2994,0:-269.692,-25.2865,0,-269.692,-25.2865,-269.692	1/1:115:0,114,1:0:0:114,1:4082,36:-367.206,-34.3174,0,-364.269,-31.0202,-363.968	1/2:12:0,2,10:0:0:2,10:72,360:-35.6088,-29.734,-29.1319,-6.23466,0,-3.22436	1/1:265:0,265,0:0:0:265,0:9420,0:-847.768,-79.773,0,-847.768,-79.773,-847.768	1/1:245:4,237,3:4:139:237,3:8378,108:-741.186,-60.0404,0,-733.578,-62.5246,-743.975	1/2:74:0,39,33:0:0:39,33:1360,1169:-205.836,-95.2312,-83.491,-110.606,0,-100.672	1/1:130:0,130,0:0:0:130,0:4585,0:-412.811,-39.1339,0,-412.811,-39.1339,-412.811	1/2:244:0,123,121:0:0:123,121:4380,4340:-710.981,-353.99,-316.963,-356.989,0,-320.564	1/2:132:0,65,67:0:0:65,67:2275,2388:-380.098,-195.008,-175.441,-185.443,0,-165.274	1/1:35:0,35,0:0:0:35,0:1239,0:-111.492,-10.5361,0,-111.492,-10.5361,-111.492	1/1:109:0,109,0:0:0:109,0:3874,0:-348.857,-32.8123,0,-348.857,-32.8123,-348.857	1/2:69:0,36,33:0:0:36,33:1296,1188:-203.042,-97.2946,-86.4575,-106.107,0,-96.1729	1/2:17:0,12,5:0:0:12,5:428,180:-49.9347,-15.0469,-11.4346,-35.2467,0,-33.7415	1/1:102:0,102,0:0:0:102,0:3603,0:-324.477,-30.7051,0,-324.477,-30.7051,-324.477	1/2:61:0,32,29:0:0:32,29:1144,1040:-178.357,-85.0783,-75.4453,-93.636,0,-84.9061	1/1:277:0,276,0:0:0:276,0:9762,0:-878.215,-83.0843,0,-878.215,-83.0843,-878.215	1/1:273:0,273,0:0:0:273,0:9716,0:-874.068,-82.1812,0,-874.068,-82.1812,-874.068	1/2:143:0,66,77:0:0:66,77:2306,2764:-413.399,-225.822,-205.954,-187.931,0,-164.752	1/1:108:0,108,0:0:0:108,0:3820,0:-343.999,-32.5112,0,-343.999,-32.5112,-343.999	1/1:6:0,6,0:0:0:6,0:208,0:-19.0585,-1.80618,0,-19.0585,-1.80618,-19.0585	1/1:164:0,164,0:0:0:164,0:5803,0:-522.029,-49.3689,0,-522.029,-49.3689,-522.029	1/2:124:0,61,63:0:0:61,63:2156,2260:-360.279,-184.692,-166.329,-175.944,0,-156.979	1/2:416:0,242,173:0:0:242,173:8595,6199:-1205.36,-505.01,-432.161,-700.392,0,-648.314	1/2:107:0,50,57:0:0:50,57:1762,2044:-310.528,-167.073,-152.022,-143.81,0,-126.652	1/2:60:0,38,22:0:0:38,22:1357,788:-175.255,-64.6221,-53.183,-110.991,0,-104.368	1/2:67:0,36,31:0:0:36,31:1287,1116:-196.358,-91.4198,-80.5827,-105.297,0,-95.9646	1/2:109:0,61,48:0:0:61,48:2156,1720:-316.222,-140.635,-122.272,-175.944,0,-161.494	1/1:37:0,37,0:0:0:37,0:1323,0:-119.372,-11.1381,0,-119.372,-11.1381,-119.372	1/1:91:0,91,0:0:0:91,0:3229,0:-290.832,-27.3937,0,-290.832,-27.3937,-290.832	1/1:50:0,50,0:0:0:50,0:1784,0:-160.842,-15.0515,0,-160.842,-15.0515,-160.842	1/2:32:0,19,13:0:0:19,13:680,468:-93.9971,-38.5463,-32.8267,-55.8098,0,-51.8964	1/2:89:0,43,46:0:0:43,46:1526,1640:-258.368,-134.037,-121.092,-124.687,0,-110.84	1/2:58:0,12,46:0:0:12,46:410,1648:-168.03,-134.761,-131.149,-33.6137,0,-19.7663	1/1:172:0,171,0:0:0:171,0:6046,0:-543.988,-51.4761,0,-543.988,-51.4761,-543.988	1/1:100:0,100,0:0:0:100,0:3568,0:-321.328,-30.103,0,-321.328,-30.103,-321.328
chr07	15810894	.	C	A	57767.9	PASS	AB=0.539177;ABP=84.6798;AC=54;AF=0.287234;AN=188;AO=3319;CIGAR=1X;DP=10081;DPB=10081;DPRA=1.4107;EPP=7149.45;EPPR=14601.9;GTI=2;LEN=1;MEANALT=1.03175;MQM=59.9937;MQMR=59.9991;NS=94;NUMALT=1;ODDS=3.09508;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118788;QR=241370;RO=6759;RPL=7;RPP=7149.45;RPPR=14601.9;RPR=3312;RUN=1;SAF=0;SAP=7210.13;SAR=3319;SRF=0;SRP=14680;SRR=6759;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:18,23:18:639:23:824:-62.1411,0,-45.496	0/1:70:29,41:29:1044:41:1468:-111.344,0,-73.2027	0/1:366:169,197:169:6003:197:7080:-527.079,0,-430.199	0/1:283:135,148:135:4818:148:5308:-392.662,0,-348.581	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/0:108:108,0:108:3831:0:0:0,-32.5112,-344.984	0/1:123:51,72:51:1805:72:2584:-195.782,0,-125.703	0/0:75:75,0:75:2653:0:0:0,-22.5772,-239.013	0/1:92:52,40:52:1864:40:1432:-101.483,0,-140.345	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/0:145:145,0:145:5187:0:0:0,-43.6493,-466.969	0/1:95:39,56:39:1366:56:2004:-152.036,0,-94.6366	0/1:66:34,32:34:1220:32:1143:-83.3107,0,-90.2388	0/1:79:46,33:46:1652:33:1184:-83.0869,0,-125.187	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:50:50,0:50:1766:0:0:0,-15.0515,-159.219	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:43:29,14:29:1040:14:495:-31.9387,0,-80.9701	0/1:260:125,135:125:4457:135:4836:-357.126,0,-323.033	0/0:148:148,0:148:5232:0:0:0,-44.5524,-471.018	0/1:157:57,100:57:2033:100:3564:-273.705,0,-135.979	0/0:53:52,0:52:1864:0:0:0,-15.6536,-167.778	0/1:61:42,19:42:1499:19:680:-43.1663,0,-116.841	0/1:58:17,41:17:608:41:1457:-113.964,0,-37.5923	0/1:282:138,144:138:4949:144:5168:-380.368,0,-360.666	0/0:291:291,0:291:10387:0:0:0,-87.5997,-934.75	0/0:44:44,0:44:1554:0:0:0,-13.2453,-140.148	0/1:510:224,286:224:8002:286:10224:-766.558,0,-566.674	0/0:145:141,4:141:5015:4:144:0,-30.3357,-438.181	0/0:91:89,2:89:3200:2:72:0,-20.557,-281.385	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/1:227:114,113:114:4043:113:4037:-295.178,0,-295.722	0/1:133:70,63:70:2486:63:2255:-163.175,0,-183.953	0/1:74:43,31:43:1529:31:1101:-77.1221,0,-115.625	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:139:71,68:71:2514:68:2440:-178.012,0,-184.666	0/1:53:28,25:28:1008:25:896:-65.0058,0,-75.0818	0/1:144:62,82:62:2224:82:2914:-219.144,0,-157.076	0/1:47:22,25:22:788:25:900:-67.1726,0,-57.0964	0/1:83:45,38:45:1612:38:1364:-98.0752,0,-120.385	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605	0/1:203:96,107:96:3395:107:3798:-280.908,0,-244.654	0/0:130:130,0:130:4642:0:0:0,-39.1339,-417.94	0/1:140:64,76:64:2292:76:2732:-203.978,0,-164.397	0/1:149:62,87:62:2228:87:3118:-235.993,0,-155.93	0/1:23:10,13:10:360:13:464:-35.1738,0,-25.8206	0/1:222:108,114:108:3865:114:4087:-301.187,0,-281.215	0/0:52:52,0:52:1857:0:0:0,-15.6536,-167.408	0/1:30:16,14:16:576:14:496:-35.9428,0,-43.1441	0/1:129:56,73:56:2012:73:2624:-197.574,0,-142.52	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:76:76,0:76:2721:0:0:0,-22.8783,-245.131	0/0:127:127,0:127:4533:0:0:0,-38.2308,-408.137	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:216:216,0:216:7711:0:0:0,-65.0225,-694.021	0/0:147:144,3:144:5149:3:108:0,-34.1762,-453.475	0/1:78:41,37:41:1472:37:1332:-96.702,0,-109.296	0/0:114:114,0:114:4074:0:0:0,-34.3174,-366.843	0/1:129:66,63:66:2368:63:2251:-164.019,0,-174.541	0/1:170:58,112:58:2084:112:4004:-309.374,0,-136.655	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.584	0/1:66:28,37:28:1008:37:1323:-99.4446,0,-71.1096	0/1:57:26,31:26:928:31:1108:-82.8723,0,-66.6795	0/0:183:182,1:182:6472:1:36:0,-51.4902,-578.965	0/1:124:52,72:52:1864:72:2568:-194.04,0,-130.712	0/0:99:98,1:98:3524:1:36:0,-26.2037,-313.77	0/0:279:276,2:276:9863:2:72:0,-77.1095,-880.822	0/1:81:20,61:20:720:61:2188:-172.802,0,-40.7453	0/0:77:76,1:76:2717:1:36:0,-19.581,-241.173	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:134:133,1:133:4757:1:36:0,-36.7397,-424.688	0/1:127:56,71:56:2008:71:2548:-191.332,0,-142.763	0/1:158:68,90:68:2433:90:3215:-242.009,0,-171.661	0/1:70:30,40:30:1080:40:1440:-108.826,0,-76.4412	0/1:89:38,51:38:1360:51:1836:-138.729,0,-95.9089	0/1:44:18,26:18:648:26:936:-71.3141,0,-45.4066	0/1:157:79,78:79:2797:78:2768:-202.098,0,-204.706	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/1:52:25,27:25:900:27:972:-72.1443,0,-65.6675	0/1:144:69,75:69:2480:75:2673:-197.466,0,-180.105	0/1:116:43,73:43:1514:73:2628:-201.847,0,-101.63	0/0:193:192,1:192:6828:1:21:0,-55.9988,-612.489	0/0:128:128,0:128:4586:0:0:0,-38.5318,-412.903
chr07	15811026	.	C	A	51858.3	PASS	AB=0.322229;ABP=3373.02;AC=92;AF=0.489362;AN=188;AO=3956;CIGAR=1X;DP=12301;DPB=12301;DPRA=11.1205;EPP=8593.36;EPPR=18100.1;GTI=14;LEN=1;MEANALT=1.1087;MQM=59.9912;MQMR=59.9993;NS=94;NUMALT=1;ODDS=0.521939;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141282;QR=297491;RO=8334;RPL=3956;RPP=8593.36;RPPR=18100.1;RPR=0;RUN=1;SAF=0;SAP=8593.36;SAR=3956;SRF=0;SRP=18100.1;SRR=8334;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:131:100,31:100:3556:31:1112:-60.9564,0,-280.816	0/1:80:65,15:65:2332:15:540:-24.8541,0,-186.057	0/1:247:205,42:205:7286:42:1497:-60.6681,0,-581.441	0/1:298:230,68:230:8202:68:2424:-128.709,0,-648.487	0/1:86:38,48:38:1364:48:1712:-128.477,0,-97.1721	0/1:49:27,22:27:968:22:788:-56.4943,0,-72.6869	0/1:145:89,56:89:3177:56:2004:-136.984,0,-242.504	0/1:218:160,58:160:5702:58:2072:-121.126,0,-447.675	0/1:168:79,89:79:2821:89:3176:-235.492,0,-203.555	0/1:129:91,38:91:3260:38:1368:-84.588,0,-254.788	0/1:75:39,36:39:1396:36:1287:-93.5555,0,-103.362	0/1:189:105,83:105:3752:83:2975:-211.028,0,-280.927	0/1:116:87,29:87:3115:29:1044:-59.3553,0,-245.657	0/1:65:56,9:56:2000:9:324:-9.93891,0,-160.707	0/1:106:80,26:80:2847:26:932:-52.2897,0,-224.559	0/1:84:50,34:50:1792:34:1220:-84.8203,0,-136.276	0/1:45:24,21:24:860:21:756:-54.8209,0,-64.1755	0/1:47:29,18:29:1036:18:635:-43.3286,0,-79.4055	0/1:64:48,16:48:1710:16:576:-32.9091,0,-134.918	0/1:265:211,54:211:7539:54:1936:-94.7434,0,-598.779	0/1:242:111,131:111:3922:131:4686:-349.051,0,-280.325	0/1:135:115,20:115:4081:20:720:-24.4897,0,-326.839	0/1:129:69,59:69:2472:59:2100:-150.427,0,-183.891	0/1:67:44,23:44:1572:23:824:-54.3143,0,-121.603	0/1:198:147,51:147:5249:51:1824:-104.837,0,-412.943	0/1:305:230,75:230:8240:75:2672:-148.912,0,-649.796	0/1:327:171,155:171:6120:155:5552:-401.307,0,-452.405	0/1:45:23,22:23:820:22:792:-58.0593,0,-60.5762	0/1:251:194,57:194:6911:57:2044:-108.673,0,-546.497	0/1:116:59,57:59:2108:57:2034:-148.412,0,-155.07	0/1:119:67,52:67:2408:52:1847:-130.687,0,-181.154	0/1:30:26,4:26:924:4:144:-4.28272,0,-74.4468	0/1:28:13,15:13:453:15:536:-40.146,0,-32.6708	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:20:14,5:14:504:5:180:-10.4727,0,-39.6187	0/1:302:238,64:238:8472:64:2270:-113.649,0,-671.575	0/1:134:94,40:94:3349:40:1436:-89.1996,0,-261.288	0/1:94:75,19:75:2663:19:674:-32.6904,0,-211.62	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:208:171,37:171:6116:37:1324:-56.8479,0,-487.927	0/1:50:40,10:40:1432:10:360:-17.6928,0,-114.126	0/1:256:199,57:199:7128:57:2028:-105.729,0,-564.514	0/1:92:70,21:70:2496:21:752:-40.2526,0,-197.14	0/1:98:75,23:75:2651:23:796:-42.454,0,-209.337	0/1:191:115,76:115:4100:76:2703:-186.018,0,-311.69	0/1:158:94,64:94:3345:64:2292:-158.979,0,-253.704	0/1:231:176,55:176:6260:55:1948:-106.057,0,-493.962	0/1:138:76,62:76:2704:62:2203:-156.994,0,-202.063	0/1:134:105,29:105:3741:29:1036:-53.2159,0,-296.548	0/1:204:164,40:164:5855:40:1422:-66.8664,0,-465.653	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:258:192,66:192:6884:66:2376:-136.432,0,-541.961	0/1:70:36,34:36:1284:34:1216:-88.6745,0,-94.7913	0/1:26:22,4:22:784:4:144:-5.48684,0,-63.0571	0/1:209:161,48:161:5708:48:1704:-90.7307,0,-450.927	0/1:42:29,13:29:1036:13:460:-29.0921,0,-80.9107	0/1:17:10,7:10:345:7:252:-17.9114,0,-26.2633	0/1:34:9,25:9:320:25:896:-70.7253,0,-18.9073	0/1:110:63,47:63:2237:47:1657:-116.303,0,-168.479	0/1:135:78,57:78:2796:57:2032:-142.512,0,-211.241	0/1:24:19,5:19:680:5:180:-9.32734,0,-54.3044	0/1:214:119,95:119:4245:95:3383:-240.267,0,-317.808	0/1:168:92,76:92:3296:76:2732:-195.549,0,-246.286	0/1:93:75,18:75:2688:18:644:-30.2948,0,-214.169	0/1:129:57,72:57:2028:72:2568:-192.501,0,-143.96	0/1:187:144,43:144:5121:43:1536:-82.2405,0,-404.742	0/1:223:193,30:193:6917:30:1060:-28.5805,0,-555.464	0/1:60:30,30:30:1076:30:1067:-78.2794,0,-79.0911	0/1:68:36,32:36:1284:32:1148:-83.1598,0,-95.3934	0/1:69:52,17:52:1846:17:612:-34.6424,0,-145.648	0/1:43:35,8:35:1243:8:288:-13.3231,0,-99.2296	0/1:207:121,86:121:4325:86:3064:-213.677,0,-327.111	0/1:147:117,30:117:4178:30:1076:-52.9014,0,-331.95	0/1:159:72,87:72:2580:87:3095:-230.915,0,-184.585	0/1:251:148,101:148:5292:101:3618:-250.509,0,-401.1	0/1:174:131,43:131:4680:43:1499:-82.8201,0,-368.983	0/1:187:88,99:88:3148:99:3542:-262.696,0,-227.253	0/1:33:15,18:15:536:18:638:-47.8148,0,-38.6408	0/1:173:97,76:97:3463:76:2713:-192.334,0,-259.804	0/1:124:101,22:101:3616:22:788:-33.8584,0,-288.259	0/1:361:271,89:271:9665:89:3184:-178.053,0,-761.072	0/1:105:81,24:81:2890:24:856:-45.753,0,-228.727	0/1:91:64,27:64:2295:27:972:-60.4042,0,-179.417	0/1:60:39,21:39:1396:21:743:-49.1315,0,-107.877	0/1:198:148,50:148:5312:50:1796:-102.318,0,-418.609	0/1:40:22,18:22:792:18:644:-46.2494,0,-59.5645	0/1:128:78,49:78:2775:49:1748:-119.014,0,-211.401	0/1:126:72,54:72:2572:54:1935:-136.496,0,-193.8	0/1:51:44,7:44:1559:7:252:-7.67643,0,-125.248	0/1:114:84,30:84:2985:30:1076:-62.8354,0,-234.564	0/1:115:96,19:96:3443:19:684:-27.2719,0,-275.463	0/1:120:64,55:64:2300:55:1976:-141.932,0,-171.07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chr07	15920839	.	T	C	58623.8	PASS	AB=0.525296;ABP=37.726;AC=56;AF=0.301075;AN=186;AO=3299;CIGAR=1X;DP=10347;DPB=10347;DPRA=1.33939;EPP=6738.99;EPPR=14478.3;GTI=1;LEN=1;MEANALT=1.1;MQM=59.7223;MQMR=59.9693;NS=93;NUMALT=1;ODDS=2.48202;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117932;QR=248359;RO=7041;RPL=3249;RPP=6738.99;RPPR=14478.3;RPR=50;RUN=1;SAF=0;SAP=7166.7;SAR=3299;SRF=0;SRP=15292.3;SRR=7041;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:34,20:34:1208:20:693:-46.4321,0,-92.7705	0/1:138:66,72:66:2329:72:2567:-189.725,0,-168.327	0/1:140:67,73:67:2366:73:2620:-193.895,0,-171.047	0/1:181:98,83:98:3440:83:2980:-213.945,0,-255.325	0/0:101:101,0:101:3546:0:0:0,-30.404,-319.342	0/0:52:52,0:52:1833:0:0:0,-15.6536,-165.249	0/0:168:168,0:168:5936:0:0:0,-50.573,-534.262	0/1:131:60,71:60:2110:71:2534:-188.669,0,-150.731	0/0:136:136,0:136:4823:0:0:0,-40.9401,-434.224	0/1:150:84,66:84:2971:66:2361:-167.555,0,-222.463	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:62:62,0:62:2194:0:0:0,-18.6639,-197.714	0/1:59:31,28:31:1089:28:1008:-73.2747,0,-80.5561	0/1:67:38,29:38:1326:29:1044:-74.1012,0,-99.4382	0/1:40:20,20:20:720:20:716:-52.7265,0,-53.083	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:43:43,0:43:1502:0:0:0,-12.9443,-135.469	0/0:38:38,0:38:1323:0:0:0,-11.4391,-119.364	0/1:26:11,15:11:396:15:536:-40.748,0,-28.156	0/1:443:206,236:206:7283:236:8461:-628.217,0,-522.252	0/0:169:169,0:169:6019:0:0:0,-50.8741,-541.806	0/1:206:87,119:87:3094:119:4251:-320.755,0,-216.671	0/0:131:130,1:130:4518:1:36:0,-35.8367,-403.185	0/1:160:90,70:90:3201:70:2501:-176.8,0,-240.148	0/1:84:45,39:45:1556:39:1396:-100.604,0,-115.036	0/1:382:188,194:188:6542:194:6915:-507.416,0,-473.867	0/0:242:241,1:241:8562:1:36:0,-69.251,-766.977	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/1:344:169,175:169:5991:175:6239:-458.01,0,-435.743	0/0:145:141,4:141:4909:4:140:0,-30.7048,-429.011	0/0:211:207,4:207:7303:4:133:0,-51.3824,-645.187	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:15:7,8:7:252:8:277:-20.749,0,-18.5135	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:180:86,94:86:3038:94:3373:-249.597,0,-219.464	0/1:294:133,161:133:4662:161:5722:-426.542,0,-331.238	0/1:57:24,33:24:864:33:1179:-89.234,0,-60.9239	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:169:78,91:78:2785:91:3260:-242.737,0,-199.998	0/1:21:9,12:9:316:12:432:-32.8996,0,-22.4572	0/1:140:70,70:70:2448:70:2497:-182.823,0,-178.425	0/1:58:27,30:27:938:30:1080:-79.99,0,-67.2112	0/1:40:13,26:13:468:26:892:-68.5944,0,-30.4664	0/0:128:128,0:128:4543:0:0:0,-38.5318,-409.035	0/0:116:116,0:116:4081:0:0:0,-34.9195,-367.157	0/1:180:83,97:83:2927:97:3472:-258.472,0,-209.476	0/0:156:156,0:156:5516:0:0:0,-46.9607,-496.567	0/1:165:59,106:59:2052:106:3816:-293.956,0,-135.27	0/1:268:135,133:135:4769:133:4764:-348.237,0,-348.689	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:150:69,81:69:2472:81:2892:-215.173,0,-177.579	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/1:13:7,6:7:237:6:216:-15.8688,0,-17.7457	0/1:151:69,82:69:2431:82:2932:-218.634,0,-173.586	0/1:31:24,7:24:841:7:252:-13.6947,0,-66.6744	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/0:90:90,0:90:3164:0:0:0,-27.0927,-284.925	0/0:125:125,0:125:4443:0:0:0,-37.6287,-400.036	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:217:216,0:216:7601:0:0:0,-65.0225,-683.769	0/0:243:241,2:241:8482:2:72:0,-66.3136,-756.546	0/1:70:33,37:33:1150:37:1328:-98.7455,0,-82.7299	0/0:86:86,0:86:3069:0:0:0,-25.8886,-276.437	0/1:223:119,104:119:4143:104:3717:-267.58,0,-305.922	0/1:164:56,108:56:1948:108:3851:-297.233,0,-126.202	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:108:108,0:108:3857:0:0:0,-32.5112,-347.316	0/1:69:46,23:46:1588:23:824:-53.7104,0,-122.43	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/0:109:109,0:109:3851:0:0:0,-32.8123,-346.782	0/1:43:20,23:20:720:23:824:-61.539,0,-52.1845	0/0:267:267,0:267:9354:0:0:0,-80.375,-841.828	0/0:115:115,0:115:4072:0:0:0,-34.6184,-366.659	0/1:108:36,72:36:1254:72:2576:-199.536,0,-80.6469	0/0:113:109,2:109:3818:2:72:0,-26.9374,-336.977	.:.:.:.:.:.:.:.	0/0:136:136,0:136:4877:0:0:0,-40.9401,-439.08	0/1:126:35,91:35:1237:91:3256:-254.996,0,-73.7025	0/1:354:183,171:183:6481:171:6115:-443.776,0,-476.805	0/1:109:52,57:52:1853:57:2052:-152.123,0,-134.236	0/1:53:24,29:24:826:29:1040:-77.9574,0,-58.697	0/1:59:21,37:21:752:37:1328:-102,0,-50.1868	0/1:104:52,52:52:1842:52:1872:-137.447,0,-134.749	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/0:43:43,0:43:1521:0:0:0,-12.9443,-137.178	0/1:22:9,13:9:309:13:468:-35.8324,0,-21.5181	0/1:84:44,40:44:1550:40:1413:-102.159,0,-114.501	0/1:78:27,51:27:891:51:1821:-140.687,0,-57.0105	0/0:123:123,0:123:4348:0:0:0,-37.0267,-391.493	0/0:86:86,0:86:2994:0:0:0,-25.8886,-269.684
chr07	16401734	.	ACCGT	TCCGG,ACCGG	238761	PASS	AB=0.490481,0.498942;ABP=8.21947,3.07461;AC=134,54;AF=0.712766,0.287234;AN=188;AO=7650,3319;CIGAR=1X3M1X,4M1X;DP=11062;DPB=11062;DPRA=0,1.29977;EPP=14652.6,6648.26;EPPR=10.7656;GTI=0;LEN=5,1;MEANALT=2.56383,3.10938;MQM=59.9302,59.9943;MQMR=60;NS=94;NUMALT=2;ODDS=4.19295;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=268179,117416;QR=206;RO=7;RPL=7420,3252;RPP=14677.1,6639.92;RPPR=10.7656;RPR=230,67;RUN=1,1;SAF=3,1;SAP=16588.7,7201.44;SAR=7647,3318;SRF=0;SRP=18.2106;SRR=7;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:71:0,35,35:0:0:35,35:1237,1240:-201.753,-101.009,-90.4727,-100.739,0,-90.2027	1/2:138:0,67,69:0:0:67,69:2354,2459:-392.06,-200.462,-180.293,-191.62,0,-170.849	1/2:177:0,95,80:0:0:95,80:3344,2856:-505.126,-232.899,-204.302,-272.284,0,-248.202	1/2:225:1,107,117:1:22:107,117:3702,4149:-637.001,-336.476,-305.943,-299.277,0,-265.735	1/1:73:0,73,0:0:0:73,0:2575,0:-232.001,-21.9752,0,-232.001,-21.9752,-232.001	1/1:41:0,41,0:0:0:41,0:1439,0:-129.806,-12.3422,0,-129.806,-12.3422,-129.806	1/1:213:0,208,1:0:0:208,1:7305,36:-657.195,-62.6142,0,-654.258,-59.6668,-653.957	1/2:223:1,100,121:1:36:100,121:3494,4279:-629.513,-345.597,-318.432,-281.3,0,-247.813	1/1:112:0,112,0:0:0:112,0:3904,0:-351.56,-33.7154,0,-351.56,-33.7154,-351.56	1/2:135:0,79,54:0:0:79,54:2751,1905:-378.838,-155.136,-131.355,-223.718,0,-207.462	1/1:84:0,84,0:0:0:84,0:2922,0:-262.725,-25.2865,0,-262.725,-25.2865,-262.725	1/1:79:0,79,0:0:0:79,0:2753,0:-248.01,-23.7814,0,-248.01,-23.7814,-248.01	1/2:78:0,43,33:0:0:43,33:1487,1163:-215.511,-94.6827,-81.7385,-120.818,0,-110.884	1/2:69:1,29,38:1:21:29,38:1018,1351:-191.149,-108.6,-101.456,-81.3516,0,-71.4969	1/2:75:0,44,31:0:0:44,31:1554,1091:-215.688,-89.1653,-75.92,-126.875,0,-117.543	1/1:76:0,76,0:0:0:76,0:2667,0:-240.277,-22.8783,0,-240.277,-22.8783,-240.277	1/1:77:0,77,0:0:0:77,0:2710,0:-244.145,-23.1793,0,-244.145,-23.1793,-244.145	1/1:68:0,68,0:0:0:68,0:2389,0:-215.266,-20.47,0,-215.266,-20.47,-215.266	1/2:54:0,19,34:0:0:19,34:678,1206:-153.523,-98.2498,-92.5302,-55.2698,0,-45.0348	1/2:281:0,174,105:0:0:174,105:6156,3715:-804,-302.584,-250.205,-501.409,0,-469.801	1/1:161:0,160,0:0:0:160,0:5628,0:-506.321,-48.1648,0,-506.321,-48.1648,-506.321	1/2:149:0,59,89:0:0:59,89:2069,3139:-424.063,-255.693,-237.932,-168.469,0,-141.678	1/1:125:0,124,0:0:0:124,0:4375,0:-393.564,-37.3277,0,-393.564,-37.3277,-393.564	1/2:89:0,41,48:0:0:41,48:1426,1703:-255.047,-139.106,-126.764,-116.292,0,-101.842	1/2:105:0,55,49:0:0:55,49:1901,1725:-294.932,-140.471,-123.915,-154.498,0,-139.748	1/2:327:0,160,164:0:0:160,164:5565,5785:-923.56,-471.088,-422.923,-452.508,0,-403.139	1/1:249:0,248,0:0:0:248,0:8702,0:-782.866,-74.6554,0,-782.866,-74.6554,-782.866	1/1:47:0,47,0:0:0:47,0:1663,0:-149.957,-14.1484,0,-149.957,-14.1484,-149.957	1/2:478:0,227,247:0:0:227,247:7936,8767:-1360.01,-714.413,-646.08,-645.692,0,-571.337	1/1:152:0,150,2:0:0:150,2:5271,72:-474.176,-45.1545,0,-468.301,-38.9198,-467.699	1/1:132:0,129,2:0:0:129,2:4490,58:-403.954,-38.8329,0,-399.338,-34.2622,-398.736	1/2:9:0,5,4:0:0:5,4:166,140:-25.1134,-11.7405,-10.2353,-13.7144,0,-12.5102	1/1:22:0,22,0:0:0:22,0:774,0:-69.9814,-6.62266,0,-69.9814,-6.62266,-69.9814	1/1:7:0,7,0:0:0:7,0:248,0:-22.6645,-2.10721,0,-22.6645,-2.10721,-22.6645	1/2:11:0,7,4:0:0:7,4:250,144:-32.4902,-12.1095,-10.0023,-20.7395,0,-19.5354	1/2:19:0,14,5:0:0:14,5:485,180:-54.4518,-15.0469,-10.8325,-39.7611,0,-38.256	1/2:233:0,113,116:0:0:113,116:4001,4115:-661.186,-335.273,-301.257,-325.924,0,-291.004	1/2:211:0,93,117:0:0:93,117:3262,4140:-602.648,-337.204,-309.208,-265.437,0,-230.216	1/2:88:0,45,43:0:0:45,43:1596,1517:-253.907,-123.877,-110.33,-130.384,0,-117.44	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/2:124:0,70,53:0:0:70,53:2465,1857:-351.824,-151.143,-130.071,-200.721,0,-184.767	1/2:38:0,19,18:0:0:19,18:664,635:-105.712,-51.699,-45.9794,-54.0048,0,-48.5863	1/2:198:1,99,97:1:36:99,97:3467,3393:-554.868,-273.09,-246.225,-279.132,0,-252.869	1/2:80:1,39,39:1:31:39,39:1362,1381:-220.507,-110.023,-100.771,-108.313,0,-99.0606	1/2:69:0,38,31:0:0:38,31:1298,1079:-193.411,-88.0858,-76.6466,-105.67,0,-96.338	1/1:126:0,124,0:0:0:124,0:4361,0:-392.289,-37.3277,0,-392.289,-37.3277,-392.289	1/1:174:0,174,0:0:0:174,0:6087,0:-547.945,-52.3792,0,-547.945,-52.3792,-547.945	1/2:244:1,121,121:1:24:121,121:4194,4262:-685.84,-345.264,-310.697,-339.151,0,-304.585	1/1:142:0,142,0:0:0:142,0:4960,0:-446.491,-42.7463,0,-446.491,-42.7463,-446.491	1/2:181:0,92,85:0:0:92,85:3239,3031:-510.798,-247.111,-219.417,-263.719,0,-238.131	1/2:187:0,89,96:0:0:89,96:3141,3419:-534.439,-278.666,-251.875,-255.768,0,-226.869	1/2:13:0,6,7:0:0:6,7:204,252:-37.459,-20.9217,-19.1156,-16.8863,0,-14.7791	1/2:196:0,113,79:0:0:113,79:3998,2812:-554.849,-229.206,-195.189,-325.665,0,-301.883	1/1:16:0,15,1:0:0:15,1:538,36:-48.396,-4.51545,0,-45.4585,-1.21821,-45.1575	1/2:22:0,10,12:0:0:10,12:353,419:-63.1779,-34.4303,-31.42,-29.0987,0,-25.4864	1/2:189:0,81,105:0:0:81,105:2831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chr07	16870327	.	G	A	189121	PASS	AB=0.31594;ABP=11744.1;AC=94;AF=0.5;AN=188;AO=12606;CIGAR=1X;DP=39900;DPB=39900;DPRA=0;EPP=14709.9;EPPR=57499.5;GTI=13;LEN=1;MEANALT=1.06383;MQM=46.2357;MQMR=34.4168;NS=94;NUMALT=1;ODDS=5.9347;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=448745;QR=971974;RO=27288;RPL=0;RPP=27376.6;RPPR=59258.1;RPR=12606;RUN=1;SAF=1683;SAP=14709.9;SAR=10923;SRF=204;SRP=57499.5;SRR=27084;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:138:67,71:67:2400:71:2505:-168.126,0,-147.054	0/1:713:508,205:508:18109:205:7308:-422.008,0,-1225.19	0/1:591:346,245:346:12326:245:8697:-542.71,0,-801.289	0/1:864:705,159:705:25109:159:5670:-243.32,0,-1709.81	0/1:280:145,135:145:5172:135:4827:-325.269,0,-350.24	0/1:282:173,109:173:6182:109:3904:-233.575,0,-401.241	0/1:562:361,201:361:12885:201:7189:-474.276,0,-829.498	0/1:802:556,246:556:19676:246:8725:-449.031,0,-1331.3	0/1:275:168,106:168:5956:106:3778:-228.195,0,-379.557	0/1:519:375,144:375:13374:144:5126:-274.945,0,-907.69	0/1:479:326,153:326:11627:153:5458:-324.252,0,-772.487	0/1:294:206,88:206:7274:88:3121:-186.148,0,-489.354	0/1:286:179,107:179:6416:107:3791:-227.618,0,-411.354	0/1:523:339,184:339:12050:184:6542:-397.127,0,-803.585	0/1:287:209,78:209:7491:78:2779:-160.569,0,-509.481	0/1:282:207,75:207:7383:75:2679:-142.727,0,-510.282	0/1:393:293,100:293:10451:100:3550:-191.051,0,-709.927	0/1:245:202,43:202:7224:43:1529:-60.5576,0,-500.024	0/1:274:204,70:204:7290:70:2489:-135.774,0,-492.46	0/1:924:590,333:590:20943:333:11908:-789.238,0,-1384.9	0/1:486:297,189:297:10620:189:6731:-419.95,0,-669.677	0/1:286:177,109:177:6278:109:3866:-261.54,0,-314.379	0/1:209:105,104:105:3724:104:3731:-264.786,0,-224.291	0/1:453:223,230:223:7911:230:8240:-576.425,0,-493.986	0/1:278:157,120:157:5595:120:4247:-269.065,0,-358.909	0/1:1302:1098,204:1098:39060:204:7269:-256.249,0,-2506.52	0/1:924:568,356:568:20162:356:12698:-852.884,0,-1286.4	0/1:162:101,61:101:3603:61:2171:-145.652,0,-242.768	0/1:1385:958,427:958:34141:427:15142:-885.856,0,-1962.93	0/1:466:240,226:240:8521:226:8035:-544.742,0,-534.554	0/1:303:218,85:218:7795:85:3047:-179.572,0,-504.601	0/1:14:7,7:7:243:7:251:-17.5664,0,-15.021	0/1:58:45,13:45:1616:13:468:-24.0597,0,-113.504	0/1:20:15,5:15:536:5:161:-7.72281,0,-29.994	0/1:45:30,15:30:1068:15:536:-30.1785,0,-69.9369	0/1:42:27,15:27:972:15:536:-34.1886,0,-62.9509	0/1:1156:849,307:849:30297:307:10917:-584.469,0,-1824.89	0/1:490:387,103:387:13793:103:3641:-172.016,0,-939.306	0/1:427:326,101:326:11559:101:3575:-183.554,0,-782.409	0/1:30:17,13:17:599:13:468:-31.0733,0,-28.4106	0/1:871:556,315:556:19832:315:11244:-741.683,0,-1307.35	0/1:193:114,79:114:4052:79:2830:-194.263,0,-248.225	0/1:651:376,275:376:13398:275:9780:-646.585,0,-854.319	0/1:405:245,160:245:8683:160:5681:-367.567,0,-568.918	0/1:328:229,99:229:8105:99:3519:-202.517,0,-541.07	0/1:339:246,92:246:8717:92:3253:-176.624,0,-468.636	0/1:491:295,196:295:10523:196:6945:-410.319,0,-696.595	0/1:643:427,216:427:15213:216:7679:-494.023,0,-971.166	0/1:372:299,73:299:10701:73:2577:-116.794,0,-728.361	0/1:720:520,200:520:18533:200:7121:-381.288,0,-1244.27	0/1:960:724,236:724:25834:236:8435:-432.923,0,-1586.16	0/1:56:35,21:35:1260:21:749:-47.7627,0,-79.2105	0/1:739:507,232:507:18061:232:8305:-503.449,0,-1213.66	0/1:171:126,45:126:4466:45:1611:-91.842,0,-247.005	0/1:45:32,13:32:1148:13:468:-23.6537,0,-78.8431	0/1:678:394,284:394:14038:284:10084:-655.884,0,-887.362	0/1:102:74,28:74:2646:28:995:-57.864,0,-169.044	0/1:20:7,13:7:252:13:464:-35.819,0,-13.7694	0/1:127:77,50:77:2760:50:1752:-112.68,0,-168.086	0/1:278:176,102:176:6283:102:3632:-223.313,0,-402.168	0/1:461:315,146:315:11249:146:5224:-328.841,0,-723.88	0/1:36:16,20:16:572:20:698:-48.3229,0,-34.5509	0/1:839:631,208:631:22460:208:7408:-410.484,0,-1330.7	0/1:816:510,306:510:18140:306:10904:-729.092,0,-1141.12	0/1:382:265,117:265:9407:117:4149:-255.223,0,-612.434	0/1:378:241,137:241:8559:137:4889:-324.711,0,-535.369	0/1:500:345,155:345:12277:155:5516:-338.794,0,-816.902	0/1:486:285,201:285:10153:201:7163:-496.287,0,-629.872	0/1:203:148,55:148:5304:55:1976:-113.655,0,-343.084	0/1:405:285,120:285:10167:120:4277:-256.832,0,-675.73	0/1:475:353,122:353:12641:122:4358:-248.136,0,-753.782	0/1:115:69,46:69:2452:46:1648:-108.209,0,-156.635	0/1:374:277,97:277:9889:97:3447:-188.624,0,-660.693	0/1:324:223,101:223:7947:101:3594:-193.333,0,-543.666	0/1:906:587,319:587:20882:319:11296:-683.889,0,-1348.56	0/1:625:470,155:470:16778:155:5542:-303.755,0,-1147.23	0/1:321:182,139:182:6491:139:4950:-337.419,0,-405.112	0/1:495:366,129:366:12998:129:4585:-252.115,0,-880.519	0/1:15:4,11:4:144:11:392:-29.7016,0,-7.02269	0/1:541:405,136:405:14413:136:4843:-262.684,0,-985.378	0/1:378:286,92:286:10149:92:3264:-173.263,0,-687.084	0/1:1040:817,222:817:29145:222:7891:-387.641,0,-1978.02	0/1:335:236,99:236:8414:99:3530:-212.542,0,-543.068	0/1:237:154,83:154:5491:83:2957:-193.797,0,-354.736	0/1:311:227,84:227:8079:84:2972:-160.13,0,-556.771	0/1:494:317,177:317:11264:177:6341:-418.331,0,-725.951	0/1:153:95,58:95:3403:58:2056:-120.29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chr07	16870332	.	TC	TT	26411.3	PASS	AB=0.197481;ABP=30743.8;AC=88;AF=0.468085;AN=188;AO=7725;CIGAR=1M1X;DP=39937;DPB=39938.5;DPRA=0;EPP=16777.6;EPPR=59264;GTI=41;LEN=1;MEANALT=1.89362;MQM=35.539;MQMR=38.9477;NS=94;NUMALT=1;ODDS=0.946883;PAIRED=0;PAIREDR=0;PAO=1.5;PQA=52;PQR=0;PRO=0;QA=270994;QR=1094353;RO=32070;RPL=0;RPP=16777.6;RPPR=63919.2;RPR=7725;RUN=1;SAF=0;SAP=16777.6;SAR=7725;SRF=1916;SRP=53994.2;SRR=30154;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:133:112,21:112:3778:21:752:-23.0279,0,-269.58	0/1:718:572,144:572:19559:144:5024:-204.975,0,-1393.95	0/1:599:486,113:486:16536:113:3988:-155.364,0,-1160.51	0/1:860:702,158:702:23912:158:5531:-180.146,0,-1693.74	0/0:282:275,7:275:9563:7:237:0,-64.9197,-790.38	0/0:280:258,20:258:8863:20:701:0,-25.3617,-654.999	0/1:567:401,163:401:13719:163:5720:-282.376,0,-985.921	0/1:799:622,175:622:20864:175:6038:-267.617,0,-1423.2	0/1:272:221,50:221:7464:50:1743:-63.0865,0,-514.734	0/1:516:421,92:421:14397:92:3210:-109.86,0,-1019.3	0/1:473:376,97:376:12843:97:3270:-129.79,0,-908.091	0/1:295:240,55:240:8210:55:1930:-68.9448,0,-593.742	0/1:289:227,60:227:7809:60:2063:-87.0905,0,-536.05	0/1:533:439,93:439:15030:93:3297:-115.423,0,-1070.79	0/1:287:230,56:230:7927:56:1958:-69.5359,0,-578.253	0/1:284:223,61:223:7652:61:2142:-93.1324,0,-543.209	0/1:393:300,91:300:10283:91:3133:-144.706,0,-722.837	0/1:240:195,44:195:6725:44:1557:-55.9109,0,-479.193	0/1:277:218,57:218:7498:57:1974:-79.9733,0,-532.256	0/1:931:739,189:739:25285:189:6656:-268.706,0,-1852.98	0/1:485:366,117:366:12377:117:4097:-195.201,0,-847.328	0/0:290:262,27:262:8864:27:942:0,-8.75807,-582.327	0/1:209:175,34:175:5928:34:1186:-34.3332,0,-430.923	0/1:453:388,65:388:13348:65:2201:-45.6557,0,-986.275	0/1:279:246,32:246:8330:32:1107:-6.31398,0,-594.57	0/1:1301:1011,285:1011:33878:285:9955:-434.367,0,-2201.97	0/1:933:726,206:726:24868:206:7309:-313.014,0,-1786.82	0/1:159:129,30:129:4415:30:1057:-38.7302,0,-332.137	0/1:1381:1146,228:1146:39348:228:7951:-250.552,0,-2503.06	0/1:469:381,86:381:12932:86:3007:-108.897,0,-934.535	0/1:302:221,79:221:7527:79:2791:-139.557,0,-521.344	0/1:14:10,4:10:338:4:144:-6.72376,0,-25.0907	0/1:60:46,14:46:1564:14:474:-19.9174,0,-112.94	0/1:20:11,2:11:376:2:72:-2.13903,0,-27.5309	0/1:42:35,7:35:1185:7:252:-8.47211,0,-81.7278	0/1:41:29,12:29:1004:12:417:-22.5158,0,-69.2728	0/1:1154:953,199:953:32713:199:6962:-234.481,0,-2099.14	0/1:494:381,113:381:12852:113:3996:-172.038,0,-901.617	0/1:421:319,95:319:10944:95:3324:-153.099,0,-768.254	0/0:30:24,1:24:833:1:36:0,-4.44036,-64.4634	0/1:876:715,158:715:24392:158:5582:-188.661,0,-1791.49	0/1:193:156,37:156:5316:37:1320:-48.1133,0,-380.322	0/1:660:582,77:582:19923:77:2710:-24.6947,0,-1444.14	0/1:401:336,64:336:11606:64:2205:-62.646,0,-837.576	0/1:329:266,63:266:8820:63:2176:-78.499,0,-632.982	0/1:338:287,51:287:9730:51:1824:-49.6004,0,-582.255	0/1:493:436,56:436:14811:56:1955:-13.4575,0,-1051.75	0/1:649:501,144:501:17051:144:5062:-209.863,0,-1218.48	0/1:369:260,109:260:8751:109:3851:-194.589,0,-611.411	0/1:721:568,144:568:19298:144:5081:-203.875,0,-1362.63	0/1:957:780,177:780:26720:177:6252:-229.752,0,-1721.45	0/0:57:52,5:52:1781:5:165:0,-3.38444,-131.055	0/1:733:583,148:583:20032:148:5270:-213.799,0,-1437.86	0/1:169:145,23:145:4865:23:805:-16.9774,0,-303.015	0/1:45:26,19:26:887:19:665:-42.0383,0,-56.2723	0/1:684:536,147:536:18225:147:5193:-221.84,0,-1285.86	0/1:102:88,14:88:3013:14:485:-7.76626,0,-208.91	0/1:20:17,3:17:595:3:108:-3.34861,0,-45.8882	0/1:127:101,25:101:3433:25:873:-35.4562,0,-233.425	0/1:283:217,66:217:7303:66:2278:-102.474,0,-502.679	0/1:460:357,103:357:12400:103:3631:-151.158,0,-874.071	0/1:35:31,4:31:1081:4:144:-1.32003,0,-78.1766	0/1:841:730,108:730:24920:108:3807:-61.8955,0,-1629.1	0/1:815:663,151:663:22762:151:5290:-176.528,0,-1635.45	0/1:390:284,106:284:9568:106:3748:-193.856,0,-664.96	0/1:380:315,64:315:10731:64:2266:-66.1302,0,-770.259	0/1:507:407,99:407:13830:99:3498:-127.226,0,-1000.66	0/1:487:384,102:384:13079:102:3600:-140.908,0,-945.906	0/1:204:141,62:141:4820:62:2108:-109.439,0,-329.68	0/1:410:335,75:335:11361:75:2672:-95.4568,0,-810.069	0/1:470:391,79:391:13478:79:2698:-85.4857,0,-866.886	0/1:113:83,30:83:2817:30:1046:-53.2959,0,-200.557	0/1:374:300,73:300:10205:73:2559:-100.93,0,-714.634	0/1:325:250,74:250:8535:74:2626:-122.018,0,-594.124	0/1:904:737,165:737:24913:165:5839:-208.567,0,-1737.85	0/1:624:510,113:510:17594:113:4007:-131.175,0,-1276.11	0/0:326:295,28:295:10014:28:1000:0,-14.4722,-745.38	0/1:484:375,105:375:12732:105:3685:-159.279,0,-907.151	0/1:16:13,3:13:440:3:99:-3.75052,0,-32.8368	0/1:543:405,131:405:13964:131:4647:-216.63,0,-995.543	0/1:375:284,87:284:9643:87:3090:-142.262,0,-683.472	0/1:1044:815,218:815:27889:218:7692:-299.409,0,-1993.96	0/1:329:255,73:255:8791:73:2561:-113.853,0,-610.146	0/1:238:184,53:184:6380:53:1846:-76.4054,0,-461.511	0/1:312:253,59:253:8507:59:2051:-77.0067,0,-610.766	0/1:494:395,99:395:13608:99:3504:-141.507,0,-968.998	0/1:154:124,30:124:4189:30:1061:-42.1366,0,-291.229	0/1:297:234,63:234:7972:63:2233:-94.3426,0,-563.261	0/1:277:223,54:223:7712:54:1932:-76.518,0,-546.424	0/1:297:238,59:238:8228:59:2085:-83.923,0,-580.862	0/1:582:437,139:437:14845:139:4867:-231.242,0,-1028.37	0/1:310:259,50:259:8859:50:1630:-43.761,0,-636.983	0/1:306:243,63:243:8272:63:2237:-85.9379,0,-605.772	0/1:443:352,91:352:12121:91:3171:-119.655,0,-870.806
chr07	16870335	.	T	A	148413	PASS	AB=0.26763;ABP=18564.7;AC=94;AF=0.5;AN=188;AO=10592;CIGAR=1X;DP=39577;DPB=39577;DPRA=0;EPP=23003.2;EPPR=62812.9;GTI=19;LEN=1;MEANALT=1.19149;MQM=48.9913;MQMR=34.2498;NS=94;NUMALT=1;ODDS=4.09485;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=378189;QR=1035172;RO=28965;RPL=1673;RPP=10767;RPPR=61225.9;RPR=8919;RUN=1;SAF=1673;SAP=10767;SAR=8919;SRF=202;SRP=61157.4;SRR=28763;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:133:87,46:87:3115:46:1652:-106.52,0,-199.943	0/1:710:504,206:504:18044:206:7350:-426.553,0,-1218.13	0/1:592:433,159:433:15503:159:5686:-324.389,0,-1030.7	0/1:854:694,159:694:24819:159:5682:-246.79,0,-1689.18	0/1:277:183,94:183:6538:94:3371:-213.874,0,-453.855	0/1:275:207,68:207:7420:68:2435:-128.873,0,-491.361	0/1:565:359,206:359:12810:206:7363:-489.014,0,-821.486	0/1:781:680,101:680:24240:101:3619:-79.7763,0,-1668.69	0/1:268:203,65:203:7275:65:2336:-124.94,0,-475.659	0/1:516:436,80:436:15524:80:2857:-97.8456,0,-1079.52	0/1:471:363,108:363:12901:108:3857:-200.293,0,-874.8	0/1:287:198,89:198:7087:89:3143:-189.849,0,-474.445	0/1:285:218,67:218:7763:67:2365:-123.374,0,-510.883	0/1:521:392,129:392:13992:129:4607:-253.373,0,-950.163	0/1:288:209,79:209:7487:79:2816:-163.58,0,-506.335	0/1:283:225,57:225:8023:57:2039:-94.6112,0,-559.942	0/1:392:293,99:293:10453:99:3534:-189.886,0,-708.726	0/1:246:201,44:201:7195:44:1543:-60.9194,0,-498.643	0/1:275:203,72:203:7225:72:2561:-140.809,0,-490.204	0/1:922:583,339:583:20839:339:12095:-806.392,0,-1375.06	0/1:480:356,124:356:12728:124:4443:-246.918,0,-831.106	0/1:285:173,112:173:6192:112:4024:-275.99,0,-308.099	0/1:205:114,91:114:4087:91:3259:-230.977,0,-250.829	0/1:453:264,188:264:9455:188:6735:-464.315,0,-610.109	0/1:273:198,75:198:7065:75:2673:-152.995,0,-467.972	0/1:1292:1087,205:1087:38831:205:7323:-263.983,0,-2492.17	0/1:927:562,365:562:20105:365:13014:-879.181,0,-1280.72	0/1:164:103,61:103:3678:61:2188:-146.332,0,-248.253	0/1:1371:1103,267:1103:39414:267:9565:-444.614,0,-2383.16	0/1:461:299,162:299:10693:162:5782:-376.992,0,-697.696	0/1:301:215,85:215:7681:85:3032:-178.674,0,-499.323	0/1:15:8,7:8:284:7:248:-17.4615,0,-17.6596	0/1:59:46,13:46:1648:13:444:-21.6376,0,-115.75	0/1:20:18,2:18:648:2:72:-0.718815,0,-37.0975	0/1:44:36,8:36:1288:8:284:-12.0104,0,-85.417	0/1:40:25,15:25:900:15:536:-34.7907,0,-58.0452	0/1:1127:929,198:929:33253:198:7074:-290.835,0,-2073.2	0/1:490:390,100:390:13956:100:3554:-163.029,0,-947.732	0/1:423:323,98:323:11509:98:3479:-175.345,0,-777.649	0/1:29:20,9:20:716:9:320:-20.0906,0,-37.661	0/1:865:546,319:546:19529:319:11398:-754.079,0,-1290.15	0/1:194:115,79:115:4112:79:2831:-194.075,0,-250.732	0/1:646:440,206:440:15700:206:7346:-461.324,0,-1034.76	0/1:401:286,115:286:10172:115:4107:-247.281,0,-682.637	0/1:328:256,71:256:9102:71:2510:-123.646,0,-617.778	0/1:332:269,62:269:9619:62:2192:-94.2554,0,-546.813	0/1:485:381,103:381:13632:103:3685:-172.827,0,-925.496	0/1:644:426,218:426:15167:218:7764:-501.814,0,-966.658	0/1:366:293,73:293:10465:73:2624:-121.695,0,-710.694	0/1:720:624,96:624:22330:96:3424:-87.4722,0,-1541.78	0/1:936:774,162:774:27739:162:5780:-233.726,0,-1743.4	0/1:56:42,14:42:1504:14:504:-28.6585,0,-99.2135	0/1:733:498,235:498:17811:235:8424:-515.542,0,-1195.3	0/1:168:123,45:123:4393:45:1616:-92.9096,0,-240.531	0/1:45:39,6:39:1396:6:212:-5.60439,0,-96.532	0/1:677:476,201:476:17042:201:7168:-436.942,0,-1112.15	0/1:99:74,25:74:2660:25:900:-50.6024,0,-170.959	0/1:19:7,12:7:252:12:432:-33.2527,0,-14.0704	0/1:122:87,35:87:3082:35:1238:-74.0513,0,-197.233	0/1:279:208,71:208:7414:71:2526:-138.654,0,-486.665	0/1:456:309,146:309:11034:146:5228:-330.714,0,-708.651	0/1:35:25,10:25:900:10:356:-21.7676,0,-60.0381	0/1:835:625,209:625:22342:209:7429:-415.308,0,-1329.3	0/1:809:506,303:506:18128:303:10854:-725.733,0,-1139.34	0/1:383:261,122:261:9322:122:4361:-273.12,0,-605.037	0/1:371:236,134:236:8445:134:4792:-317.828,0,-529.685	0/1:499:340,159:340:12161:159:5690:-354.797,0,-806.054	0/1:480:277,203:277:9888:203:7247:-504.765,0,-611.603	0/1:202:147,55:147:5260:55:1972:-113.609,0,-339.93	0/1:402:282,120:282:10082:120:4298:-259.977,0,-668.445	0/1:467:347,119:347:12418:119:4255:-241.489,0,-741.183	0/1:114:84,30:84:3012:30:1080:-62.6686,0,-201.126	0/1:369:269,100:269:9629:100:3571:-201.02,0,-644.476	0/1:326:264,62:264:9403:62:2208:-94.4774,0,-647.062	0/1:908:683,225:683:24414:225:7986:-430.895,0,-1610.97	0/1:616:463,153:463:16579:153:5473:-299.361,0,-1131.27	0/1:323:182,141:182:6515:141:5001:-342.193,0,-406.725	0/1:490:360,130:360:12888:130:4654:-258.857,0,-873.341	0/1:14:4,10:4:144:10:360:-27.5381,0,-7.02926	0/1:544:409,135:409:14623:135:4827:-260.669,0,-999.953	0/1:374:284,90:284:10144:90:3232:-170.771,0,-687.912	0/1:1031:803,227:803:28748:227:8130:-409.675,0,-1948.31	0/1:334:236,98:236:8446:98:3518:-211.306,0,-545.193	0/1:234:152,82:152:5448:82:2935:-192.71,0,-351.924	0/1:316:262,54:262:9332:54:1940:-77.1257,0,-654.728	0/1:491:317,174:317:11333:174:6177:-405.047,0,-726.37	0/1:153:122,31:122:4321:31:1108:-51.0407,0,-293.045	0/1:298:209,89:209:7470:89:3164:-185.839,0,-497.167	0/1:273:204,69:204:7274:69:2464:-131.556,0,-495.099	0/1:296:228,68:228:8143:68:2432:-126.061,0,-555.721	0/1:571:410,158:410:14631:158:5593:-326.794,0,-948.04	0/1:306:194,112:194:6954:112:4000:-267.363,0,-447.265	0/1:302:247,55:247:8813:55:1958:-82.6615,0,-627.94	0/1:440:320,119:320:11423:119:4255:-245.629,0,-770.395
chr07	16870338	.	TAACTGC	CAACTGC,TAATTGT	235077	PASS	AB=0.475284,0.208069;ABP=214.578,29506.9;AC=92,30;AF=0.489362,0.159574;AN=188;AO=18951,8293;CIGAR=1X6M,3M1X2M1X;DP=39873;DPB=39873;DPRA=0,0;EPP=41154.6,17993.7;EPPR=23570;GTI=8;LEN=1,7;MEANALT=4.78723,4.82796;MQM=31.7232,43.3023;MQMR=48.8725;NS=94;NUMALT=2;ODDS=2.21946;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=593382,294522;QR=379718;RO=10853;RPL=0,2;RPP=41154.6,17993.7;RPPR=10986.1;RPR=18951,8291;RUN=1,1;SAF=0,0;SAP=41154.6,18011;SAR=18951,8293;SRF=1722;SRP=10986.1;SRR=9131;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	0/1:138:50,76,11:50:1716:76,11:2393,384:-158.005,0,-114.375,-143.08,-107.282,-277.038	0/1:712:210,315,182:210:7323:315,182:10090,6471:-671.813,0,-481.423,-231.477,-72.7102,-752.955	0/1:596:162,337,95:162:5680:337,95:10654,3386:-724.326,0,-352.748,-509.282,-190.396,-934.894	1/2:863:161,423,261:161:5650:423,261:12738,9304:-1148.86,-291.22,-617.493,-452.47,0,-827.529	0/2:283:96,73,112:96:3380:73,112:2260,3977:-287.362,-154.001,-401.457,0,-107.209,-235.753	1/2:279:70,131,75:70:2458:131,75:3985,2662:-277.404,-14.5658,-168.162,-90.8578,0,-261.333	0/1:563:207,267,85:207:7236:267,85:8414,3016:-543.117,0,-502.713,-365.497,-343.169,-923.023	1/2:799:107,508,178:107:3707:508,178:16065,6326:-1336.07,-201.129,-340.236,-875.11,0,-1113.57	0/1:271:67,165,38:67:2357:165,38:5152,1324:-350.849,0,-137.744,-268.086,-84.4954,-444.073	1/2:512:82,272,147:82:2880:272,147:8554,5249:-782.725,-189.246,-337.886,-387.631,0,-573.913	0/1:477:111,261,102:111:3910:261,102:8230,3628:-563.164,0,-234.832,-306.613,-23.4514,-589.327	0/1:295:91,116,85:91:3167:116,85:3723,3017:-242.131,0,-216.272,-34.8309,-16.5163,-260.454	0/1:286:71,177,35:71:2499:177,35:5570,1253:-381.292,0,-143.419,-305.204,-99.2481,-491.382	1/2:528:129,266,130:129:4489:266,130:8342,4619:-571.172,-5.05723,-287.475,-242.437,0,-565.815	1/2:288:80,117,86:80:2838:117,86:3578,3075:-251.949,-20.4435,-211.231,-29.554,0,-229.701	1/2:285:56,143,84:56:1961:143,84:4512,2991:-390.011,-79.1709,-192.691,-171.112,0,-302.408	0/1:391:103,183,99:103:3606:183,99:5919,3502:-402.142,0,-228.444,-165.61,-16.0073,-419.35	1/2:244:44,109,88:44:1532:109,88:3483,3132:-359.538,-121.472,-210.019,-129.935,0,-224.816	1/2:275:72,125,73:72:2520:125,73:3973,2591:-269.373,-4.09372,-163.343,-90.0598,0,-264.979	0/1:925:345,379,190:345:12065:379,190:11924,6659:-763.02,0,-863.132,-334.187,-444.552,-1254.24	0/1:480:129,301,45:129:4508:301,45:9487,1578:-649.047,0,-266.893,-562.375,-232.004,-906.345	0/1:283:113,63,19:113:3920:63,19:1939,683:-105.642,0,-299.248,-84.3871,-262.95,-396.864	0/1:211:91,99,15:91:3181:99,15:3067,538:-193.318,0,-228.214,-177.475,-214.788,-431.006	0/1:451:188,172,86:188:6598:172,86:5419,3046:-335.107,0,-479.89,-149.98,-289.966,-655.785	0/1:273:76,131,65:76:2643:131,65:4066,2305:-269.64,0,-170.86,-109.39,-27.185,-300.142	1/2:1314:206,624,302:206:7235:624,302:19295,10666:-1612.7,-280.169,-671.696,-815.189,0,-1303.65	0/1:928:363,431,128:363:12749:431,128:13495,4559:-860.44,0,-896.793,-607.843,-664.68,-1595.87	0/1:162:61,59,42:61:2153:59,42:1876,1505:-117.084,0,-156.163,-15.5785,-54.0804,-176.89	0/1:1373:276,650,166:276:9694:650,166:20530,5942:-1406.21,0,-586.804,-1011.05,-304.229,-1743.54	0/1:472:167,237,64:167:5817:237,64:7499,2265:-494.38,0,-397.414,-364.705,-288.822,-814.216	0/1:300:86,164,42:86:3036:164,42:5121,1467:-344.671,0,-194.447,-254.528,-127.796,-485.712	0/1:15:7,7,1:7:241:7,1:220,36:-13.675,0,-16.7979,-12.9059,-16.035,-31.5505	1/2:60:13,25,21:13:462:25,21:784,743:-74.6909,-22.3705,-51.6191,-19.4315,0,-49.9043	0/2:21:11,4,6:11:371:4,6:121,216:-13.5775,-8.12921,-25.3703,0,-9.68229,-16.6781	1/2:44:8,27,9:8:285:27,9:849,312:-60.5595,-1.79376,-16.2596,-38.5614,0,-58.454	0/1:41:14,25,2:14:502:25,2:814,66:-54.8071,0,-32.834,-53.8499,-35.1941,-93.5995	1/2:1146:204,473,226:204:7123:473,226:15108,8054:-1117.89,-78.9438,-507.237,-529.689,0,-1032.33	1/2:493:101,251,136:101:3512:251,136:7758,4842:-631.878,-105.562,-309.46,-277.246,0,-515.781	0/1:422:109,205,104:109:3816:205,104:6520,3700:-442.513,0,-229.585,-187.205,-3.18564,-447.211	0/1:29:14,10,5:14:497:10,5:307,178:-17.7304,0,-26.5856,-7.73455,-15.3882,-35.8789	0/1:871:321,326,217:321:11288:326,217:10225,7703:-638.918,0,-811.452,-123.911,-297.974,-968.204	0/1:194:80,86,25:80:2811:86,25:2651,887:-165.529,0,-200.617,-121.661,-158.57,-340.657	0/1:658:218,290,148:218:7493:290,148:8940,5266:-576.457,0,-514.853,-223.829,-183.918,-781.457	0/1:402:118,192,88:118:4156:192,88:6028,3123:-400.436,0,-278.76,-185.96,-86.5789,-496.048	1/2:325:70,170,83:70:2415:170,83:5322,2952:-407.489,-43.5764,-185.622,-191.749,0,-360.004	0/1:333:64,147,20:64:2254:147,20:4635,716:-316.94,0,-135.702,-278.348,-122.092,-452.254	1/2:498:105,258,133:105:3689:258,133:7938,4708:-617.285,-78.4699,-289.22,-281.988,0,-530.384	0/1:652:223,328,86:223:7822:328,86:10029,3037:-649.27,0,-531.568,-472.707,-386.626,-1077.15	1/2:369:76,204,85:76:2654:204,85:6343,3008:-461.484,-29.6133,-180.105,-242.833,0,-429.165	1/2:718:105,419,191:105:370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chr07	16870349	.	AGACTATGCA	AGATTATGCA	66605.5	PASS	AB=0.217704;ABP=25604.3;AC=84;AF=0.446809;AN=188;AO=8169;CIGAR=3M1X6M;DP=38424;DPB=40696.1;DPRA=25.8118;EPP=17741.8;EPPR=61368.8;GTI=29;LEN=1;MEANALT=3.8172;MQM=43.3172;MQMR=36.2788;NS=94;NUMALT=1;ODDS=1.06238;PAIRED=0;PAIREDR=0;PAO=0.25;PQA=6.25;PQR=21909.7;PRO=627.75;QA=291637;QR=1014187;RO=28734;RPL=8169;RPP=17741.8;RPPR=61368.8;RPR=0;RUN=1;SAF=0;SAP=17741.8;SAR=8169;SRF=0;SRP=62398.1;SRR=28734;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:139:128,11:128:4456:11:377:0,-8.8719,-329.491	0/1:716:531,177:531:18735:177:6353:-335.171,0,-1297.67	0/1:601:507,93:507:17892:93:3344:-108.11,0,-1254.04	0/1:863:598,257:598:21079:257:9142:-552.374,0,-1369.72	0/1:283:168,114:168:5926:114:4060:-272.155,0,-403.484	0/1:282:208,74:208:7352:74:2619:-141.462,0,-486.686	0/1:483:397,82:397:14038:82:2927:-113.559,0,-961.28	0/1:811:630,179:630:22084:179:6382:-307.207,0,-1484.2	0/1:273:237,36:237:8341:36:1266:-27.3392,0,-573.781	0/1:520:372,147:372:13122:147:5236:-307.111,0,-873.295	0/1:486:385,99:385:13634:99:3544:-168.27,0,-934.369	0/1:297:210,83:210:7425:83:2976:-168.839,0,-510.566	0/1:290:253,36:253:8975:36:1292:-24.2634,0,-618.834	0/1:514:380,128:380:13379:128:4596:-251.251,0,-910.889	0/1:286:197,86:197:6995:86:3072:-186.917,0,-471.692	0/1:288:201,83:201:7078:83:2944:-173.274,0,-478.634	0/1:396:296,92:296:10497:92:3249:-163.307,0,-727.844	0/1:244:158,85:158:5632:85:3036:-188.764,0,-368.74	0/1:276:203,71:203:7165:71:2525:-135.63,0,-488.943	0/1:802:610,185:610:21587:185:6600:-344.552,0,-1489.81	0/0:489:442,44:442:15550:44:1584:0,-6.95086,-1094.7	0/1:209:114,18:114:4007:18:648:-18.1572,0,-282.383	0/0:162:146,15:146:5132:15:525:0,-4.33188,-360.854	0/1:383:298,83:298:10516:83:2979:-145.409,0,-731.995	0/1:282:216,66:216:7574:66:2340:-121.056,0,-513.433	0/1:1306:849,297:849:29907:297:10591:-599.245,0,-1983.48	0/1:838:705,126:705:24895:126:4529:-146.964,0,-1746.27	0/1:144:102,42:102:3600:42:1512:-89.0584,0,-249.919	0/1:1253:838,165:838:29597:165:5888:-222.81,0,-2008.27	0/1:446:381,64:381:13384:64:2284:-65.0699,0,-946.588	0/1:305:260,40:260:9209:40:1394:-32.8057,0,-639.283	0/0:15:14,1:14:489:1:36:0,-0.994441,-36.8356	0/1:57:36,21:36:1282:21:756:-49.5798,0,-85.443	0/1:20:14,6:14:484:6:216:-12.9791,0,-24.1486	0/1:46:36,9:36:1273:9:324:-14.53,0,-85.7223	0/0:42:39,3:39:1389:3:96:0,-4.23503,-104.911	0/1:1146:694,223:694:24570:223:7994:-436.866,0,-1680.89	0/1:495:352,132:352:12351:132:4710:-268.846,0,-818.888	0/1:431:325,105:325:11517:105:3751:-194.079,0,-781.613	0/1:27:19,5:19:666:5:180:-8.58933,0,-35.2119	0/1:766:547,214:547:19289:214:7648:-442.109,0,-1309.44	0/1:185:158,23:158:5610:23:817:-17.1355,0,-396.32	0/1:582:434,145:434:15249:145:5189:-280.712,0,-1018.12	0/1:377:289,86:289:10227:86:3066:-158.053,0,-702.559	0/1:330:248,82:248:8702:82:2952:-162.389,0,-588.575	0/0:319:213,20:213:7533:20:720:0,-5.93445,-535.705	0/1:498:365,131:365:12860:131:4686:-255.433,0,-858.53	0/1:534:447,86:447:15695:86:3088:-106.646,0,-1046.86	0/1:375:287,86:287:10149:86:3069:-160.02,0,-681.622	0/1:725:537,186:537:18981:186:6619:-368.805,0,-1253.7	0/1:941:610,183:610:21573:183:6552:-345.196,0,-1465.43	0/1:53:42,11:42:1490:11:396:-19.3135,0,-99.2945	0/1:741:552,182:552:19604:182:6529:-342.803,0,-1364.69	0/1:163:103,17:103:3639:17:608:-18.1994,0,-257.148	0/0:46:41,4:41:1436:4:144:0,-1.09775,-102.019	0/1:620:535,80:535:18883:80:2854:-64.6204,0,-1308.3	0/1:107:79,26:79:2789:26:909:-48.5954,0,-182.213	0/0:15:13,1:13:459:1:36:0,-1.13158,-34.6634	0/1:119:94,16:94:3284:16:572:-18.0678,0,-230.057	0/1:285:242,39:242:8545:39:1397:-38.1617,0,-589.507	0/1:434:353,75:353:12566:75:2681:-108.854,0,-853.66	0/1:33:28,5:28:986:5:180:-6.30471,0,-69.3593	0/1:750:387,179:387:13635:179:6345:-394.959,0,-909.572	0/1:700:563,122:563:19888:122:4330:-176.884,0,-1354.02	0/1:364:308,54:308:10848:54:1936:-60.4519,0,-752.159	0/1:322:267,51:267:9400:51:1793:-62.2117,0,-637.566	0/1:505:374,124:374:13249:124:4441:-243.967,0,-912.021	0/1:428:378,49:378:13298:49:1760:-23.9095,0,-930.551	0/0:195:174,18:174:6161:18:648:0,-0.943962,-425.805	0/1:409:306,96:306:10817:96:3429:-174.985,0,-748.301	0/1:440:293,67:293:10382:67:2397:-105.671,0,-706.418	0/1:111:97,12:97:3433:12:424:-4.62414,0,-241.311	0/1:379:296,80:296:10463:80:2850:-132.682,0,-720.475	0/1:325:242,81:242:8476:81:2889:-152.034,0,-576.63	0/1:922:748,164:748:26268:164:5851:-239.226,0,-1796.43	0/1:616:420,191:420:14841:191:6851:-423.443,0,-987.507	0/1:329:271,54:271:9550:54:1887:-65.181,0,-678.656	0/1:496:369,126:369:13007:126:4524:-241.824,0,-892.029	0/0:16:16,0:16:551:0:0:0,-4.81648,-47.1251	0/1:547:380,163:380:13484:163:5801:-346.277,0,-908.268	0/1:380:286,93:286:10073:93:3322:-172.255,0,-689.604	0/1:1044:737,300:737:26057:300:10702:-636.332,0,-1717.52	0/1:336:280,53:280:9938:53:1890:-66.8071,0,-684.289	0/1:214:170,42:170:6021:42:1487:-67.2423,0,-411.697	0/1:319:220,97:220:7745:97:3458:-210.818,0,-518.236	0/1:453:372,77:372:13149:77:2772:-110.149,0,-908.913	0/1:157:126,30:126:4447:30:1080:-46.3837,0,-303.886	0/1:303:2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chr07	16870370	.	C	T	0	PASS	AB=0.142247;ABP=13796.8;AC=33;AF=0.175532;AN=188;AO=2115;CIGAR=1X;DP=37742;DPB=37742;DPRA=0.880335;EPP=4595.67;EPPR=77329.1;GTI=22;LEN=1;MEANALT=1.15094;MQM=31.9002;MQMR=37.509;NS=94;NUMALT=1;ODDS=676.211;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75716;QR=1271038;RO=35610;RPL=2115;RPP=4595.67;RPPR=77329.1;RPR=0;RUN=1;SAF=0;SAP=4595.67;SAR=2115;SRF=0;SRP=77329.1;SRR=35610;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:134:111,23:111:3941:23:824:-20.1432,0,-287.137	0/0:710:710,0:710:25376:0:0:0,-213.731,-2072.56	0/1:592:497,94:497:17734:94:3360:-68.7829,0,-1278.53	0/0:849:849,0:849:30270:0:0:0,-255.574,-2432.74	0/1:280:240,40:240:8529:40:1440:-25.9682,0,-645.559	0/1:278:239,39:239:8477:39:1396:-18.2034,0,-603.059	0/0:474:472,0:472:16870:0:0:0,-142.086,-1352.43	0/1:787:645,142:645:22984:142:5073:-132.593,0,-1622.36	0/1:264:224,40:224:7978:40:1436:-25.1974,0,-561.477	0/1:506:442,64:442:15786:64:2304:-28.0311,0,-1131.58	0/0:478:431,47:431:15354:47:1688:0,-11.0266,-1112.25	0/0:289:287,2:287:10236:2:68:0,-81.0686,-832.717	0/1:283:243,40:243:8670:40:1436:-18.8283,0,-613.593	0/1:500:439,61:439:15690:61:2188:-15.5645,0,-1140.02	0/0:282:282,0:282:10119:0:0:0,-84.8905,-829.094	0/0:286:266,20:266:9455:20:705:0,-31.5776,-721.957	0/0:390:390,0:390:13967:0:0:0,-117.402,-1133.93	0/0:245:245,0:245:8772:0:0:0,-73.7523,-708.326	0/0:271:271,0:271:9701:0:0:0,-81.5791,-787.402	0/0:791:791,0:791:28250:0:0:0,-238.115,-2312.79	0/1:475:411,64:411:14659:64:2300:-29.7718,0,-1037.01	0/0:213:212,1:212:7550:1:36:0,-61.8405,-523.04	0/0:156:141,15:141:5026:15:521:0,-6.87758,-361.768	0/1:381:334,47:334:11867:47:1684:-11.9911,0,-871.395	0/1:273:226,47:226:8056:47:1669:-43.2645,0,-576.474	0/0:1292:1291,0:1291:46116:0:0:0,-388.63,-3529.62	0/0:824:822,0:822:29306:0:0:0,-247.447,-2377.41	0/0:141:141,0:141:5060:0:0:0,-42.4452,-420.839	0/1:1260:1103,155:1103:39357:155:5552:-60.6779,0,-2469.18	0/1:439:372,67:372:13268:67:2378:-47.8036,0,-961.736	0/0:298:297,1:297:10610:1:36:0,-86.5193,-846.264	0/0:15:14,1:14:504:1:36:0,-1.46091,-38.4276	0/0:58:58,0:58:2088:0:0:0,-17.4597,-171.651	0/0:19:17,2:17:608:2:72:0,-0.797021,-37.5364	0/1:46:39,7:39:1381:7:248:-4.62513,0,-96.8184	0/0:42:42,0:42:1490:0:0:0,-12.6433,-121.256	0/0:1135:1027,108:1027:36780:108:3880:0,-37.3116,-2453.92	0/0:481:481,0:481:17203:0:0:0,-144.795,-1381.27	0/0:418:418,0:418:14957:0:0:0,-125.831,-1204.19	0/1:27:23,4:23:828:4:144:-3.17398,0,-49.0166	0/0:754:752,1:752:26895:1:32:0,-223.803,-2196	0/0:181:181,0:181:6457:0:0:0,-54.4864,-519.153	0/1:570:497,73:497:17740:73:2624:-28.7764,0,-1268.62	0/1:376:331,45:331:11753:45:1616:-11.4533,0,-850.447	0/0:324:291,33:291:10393:33:1184:0,-4.67528,-750.72	0/0:327:297,30:297:10604:30:1076:0,-12.353,-658.856	0/1:489:394,95:394:14044:95:3386:-99.4728,0,-1001.97	0/0:514:513,0:513:18259:0:0:0,-154.428,-1438.05	0/0:368:368,0:368:13136:0:0:0,-110.779,-1057.65	0/1:718:607,111:607:21623:111:3969:-97.6447,0,-1522.1	0/0:940:859,80:859:30733:80:2868:0,-57.9772,-2094.67	0/1:51:45,6:45:1605:6:216:-2.1794,0,-113.02	0/0:731:731,0:731:26174:0:0:0,-220.053,-2146.79	0/0:169:169,0:169:6041:0:0:0,-50.8741,-437.644	0/1:44:36,8:36:1288:8:288:-7.37555,0,-92.1493	0/1:610:514,94:514:18406:94:3357:-71.3126,0,-1295.1	0/0:99:98,1:98:3501:1:36:0,-26.6143,-274.57	0/0:15:15,0:15:540:0:0:0,-4.51545,-45.4536	0/1:118:102,15:102:3641:15:540:-6.43731,0,-250.28	0/1:281:248,33:248:8846:33:1188:-4.83721,0,-626.701	0/0:429:427,1:427:15295:1:36:0,-126.504,-1220.1	0/1:34:24,10:24:845:10:360:-18.0583,0,-59.5779	0/0:746:746,0:746:26609:0:0:0,-224.568,-1957.15	0/0:679:679,0:679:24249:0:0:0,-204.399,-1937.7	0/0:354:354,0:354:12581:0:0:0,-106.565,-1012.17	0/0:315:315,0:315:11213:0:0:0,-94.8244,-888.486	0/0:489:489,0:489:17420:0:0:0,-147.204,-1429.11	0/0:416:416,0:416:14808:0:0:0,-125.228,-1193.64	0/0:193:193,0:193:6885:0:0:0,-58.0988,-544.201	0/0:396:395,0:395:14067:0:0:0,-118.907,-1148.08	0/0:432:430,2:430:15414:2:72:0,-123.268,-1141.26	0/1:105:89,16:89:3180:16:576:-14.6124,0,-225.732	0/0:369:369,0:369:13182:0:0:0,-111.08,-1064.14	0/1:318:279,39:279:9912:39:1404:-3.34308,0,-719.932	0/1:900:799,101:799:28441:101:3594:-0.502451,0,-2022.14	0/0:608:608,0:608:21687:0:0:0,-183.026,-1769.33	0/0:321:321,0:321:11433:0:0:0,-96.6306,-934.338	0/0:487:485,1:485:17375:1:36:0,-143.717,-1410.99	0/0:15:14,1:14:500:1:36:0,-1.77925,-40.0102	0/0:543:541,2:541:19296:2:72:0,-157.656,-1572.38	0/0:367:367,0:367:13035:0:0:0,-110.478,-1059.58	0/0:1025:1025,0:1025:36589:0:0:0,-308.556,-2957.33	0/0:330:330,0:330:11809:0:0:0,-99.3399,-945.412	0/0:207:207,0:207:7436:0:0:0,-62.3132,-601.968	0/1:313:279,34:279:9979:34:1224:-2.1346,0,-724.892	0/0:442:441,1:441:15734:1:36:0,-130.001,-1272.04	0/1:149:123,26:123:4383:26:928:-23.1535,0,-312.112	0/0:291:291,0:291:10423:0:0:0,-87.5997,-842.603	0/0:277:277,0:277:9909:0:0:0,-83.3853,-801.892	0/0:293:293,0:293:10451:0:0:0,-88.2018,-848.651	0/1:552:474,78:474:16901:78:2796:-47.566,0,-1185.19	0/1:255:208,47:208:7385:47:1692:-58.4108,0,-520.531	0/0:297:297,0:297:10566:0:0:0,-89.4059,-876.269	0/0:434:434,0:434:15494:0:0:0,-130.647,-1262.41
chr07	16870710	.	GCTCTTC	GCTCCTC	97362.1	PASS	AB=0.659559;ABP=1807.47;AC=95;AF=0.505319;AN=188;AO=5386;CIGAR=4M1X2M;DP=8164;DPB=8164.71;DPRA=0;EPP=11698.6;EPPR=5679.24;GTI=1;LEN=1;MEANALT=2.21277;MQM=58.871;MQMR=58.5773;NS=94;NUMALT=1;ODDS=79.6421;PAIRED=0;PAIREDR=0;PAO=1.16667;PQA=42;PQR=24;PRO=0.666667;QA=192366;QR=91733;RO=2614;RPL=0;RPP=11698.6;RPPR=5679.24;RPR=5386;RUN=1;SAF=5386;SAP=11698.6;SAR=0;SRF=2614;SRP=5679.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:19,41:19:665:41:1468:-114.253,0,-42.0849	0/1:57:13,42:13:444:42:1487:-117.106,0,-23.3677	0/1:238:77,156:77:2717:156:5576:-431.34,0,-174.25	0/1:214:52,161:52:1822:161:5755:-453.453,0,-99.7039	0/1:63:19,38:19:677:38:1359:-105.066,0,-43.6323	0/1:23:8,15:8:269:15:532:-41.2894,0,-17.6134	0/1:97:49,48:49:1721:48:1722:-125.795,0,-120.823	0/1:83:9,73:9:301:73:2615:-210.64,0,-2.48142	0/1:92:22,70:22:755:70:2495:-196.963,0,-40.486	0/1:55:13,42:13:448:42:1479:-116.684,0,-24.0922	0/1:34:7,25:7:246:25:900:-71.3183,0,-12.4922	0/1:100:44,54:44:1526:54:1940:-145.021,0,-105.765	0/1:37:19,15:19:671:15:540:-38.2558,0,-50.1684	0/1:25:4,19:4:140:19:684:-54.6061,0,-5.66593	0/1:55:23,30:23:813:30:1072:-80.4782,0,-57.0995	0/1:31:9,21:9:319:21:756:-58.9767,0,-19.6648	0/1:29:7,21:7:252:21:747:-58.7633,0,-14.2405	0/1:21:8,10:8:287:10:360:-26.9992,0,-20.43	0/1:26:11,14:11:390:14:504:-37.8126,0,-27.5246	0/1:148:37,109:37:1305:109:3920:-308.353,0,-73.1091	0/1:155:46,108:46:1597:108:3860:-300.805,0,-97.2894	0/1:154:50,100:50:1746:100:3564:-275.132,0,-111.075	0/1:93:18,68:18:615:68:2428:-192.507,0,-29.3446	0/1:71:15,56:15:528:56:2012:-159.951,0,-26.4726	0/1:71:17,51:17:595:51:1832:-144.347,0,-33.0708	0/1:238:82,149:82:2900:149:5336:-409.912,0,-190.179	0/1:219:92,122:92:3254:122:4356:-327.456,0,-228.194	0/1:27:13,11:13:456:11:396:-28.3999,0,-33.7922	0/1:223:49,170:49:1715:170:6083:-480.543,0,-88.3129	0/1:96:29,67:29:1007:67:2371:-184.657,0,-61.9743	0/1:88:14,70:14:491:70:2508:-200.262,0,-18.8532	0/1:28:8,20:8:279:20:708:-55.6168,0,-16.9545	0/1:65:25,40:25:873:40:1420:-108.459,0,-59.2318	0/1:10:1,7:1:35:7:252:-20.2526,0,-0.738254	0/1:25:7,18:7:239:18:648:-51.1123,0,-14.3135	0/1:43:14,29:14:489:29:1036:-80.6096,0,-31.2996	0/1:173:65,107:65:2305:107:3827:-292.303,0,-155.248	0/1:151:51,98:51:1793:98:3504:-270.11,0,-116.432	0/1:37:8,27:8:286:27:968:-76.4871,0,-15.1635	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:119:43,75:43:1536:75:2680:-205.518,0,-102.638	0/1:53:19,34:19:670:34:1212:-93.4317,0,-44.6694	0/1:165:44,116:44:1527:116:4144:-324.531,0,-88.2487	0/1:42:14,26:14:485:26:936:-72.1658,0,-31.5958	0/1:43:11,31:11:384:31:1104:-86.5004,0,-21.8936	0/1:101:44,55:44:1557:55:1972:-147.56,0,-110.2	0/1:85:18,64:18:633:64:2296:-181.791,0,-32.261	0/1:180:74,106:74:2617:106:3775:-285.594,0,-181.363	0/1:103:41,60:41:1470:60:2139:-162.007,0,-101.835	0/1:87:17,70:17:602:70:2516:-200.409,0,-28.2982	0/1:175:76,99:76:2694:99:3539:-265.731,0,-189.055	0/1:13:4,8:4:140:8:288:-22.3628,0,-9.03949	0/1:136:46,87:46:1635:87:3119:-240.5,0,-107.014	0/1:27:11,16:11:393:16:576:-43.9192,0,-27.4976	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:120:13,106:13:456:106:3792:-305.067,0,-5.19123	0/1:64:24,39:24:840:39:1391:-106.09,0,-56.6233	0/1:22:4,17:4:135:17:594:-47.0841,0,-5.80269	0/1:28:8,19:8:279:19:684:-53.3855,0,-16.9606	0/1:56:16,38:16:573:38:1368:-106.842,0,-35.2979	0/1:97:43,51:43:1500:51:1828:-135.89,0,-106.644	0/1:9:1,8:1:36:8:288:-23.5541,0,-0.889005	0/1:178:51,123:51:1811:123:4413:-344.162,0,-110.463	0/1:158:50,106:50:1747:106:3791:-294.137,0,-110.083	0/1:48:6,41:6:216:41:1451:-116.306,0,-5.28286	0/1:111:37,72:37:1298:72:2576:-198.832,0,-83.9087	0/1:179:52,125:52:1828:125:4470:-348.467,0,-110.845	0/1:144:48,94:48:1665:94:3345:-258.148,0,-107.014	0/1:34:13,21:13:454:21:756:-58.0963,0,-30.9213	0/1:92:35,57:35:1223:57:2035:-155.713,0,-82.6767	0/1:59:24,24:24:819:24:864:-63.0784,0,-59.192	0/1:30:6,24:6:208:24:848:-67.5789,0,-10.0283	0/1:176:37,137:37:1291:137:4896:-387.949,0,-63.7153	0/1:76:9,67:9:322:67:2376:-191.202,0,-6.44593	0/1:110:27,83:27:951:83:2956:-232.966,0,-52.597	0/1:132:32,99:32:1130:99:3536:-278.615,0,-62.1366	0/1:156:72,78:72:2478:78:2780:-204.911,0,-177.757	0/1:79:20,59:20:703:59:2104:-165.82,0,-39.8119	0/1:22:4,17:4:138:17:603:-48.0678,0,-6.20963	0/1:84:31,53:31:1104:53:1874:-143.651,0,-74.3842	0/1:123:48,74:48:1675:74:2636:-200.377,0,-113.809	0/1:249:105,139:105:3689:139:4936:-370.14,0,-258.313	0/1:43:11,27:11:387:27:961:-74.9288,0,-23.3796	0/1:42:19,21:19:662:21:729:-53.531,0,-47.5049	0/1:14:6,8:6:200:8:288:-22.0493,0,-14.1121	0/1:88:22,66:22:764:66:2354:-185.57,0,-42.398	0/1:22:7,13:7:235:13:460:-35.3558,0,-15.1038	0/1:58:31,24:31:1100:24:852:-60.0928,0,-82.3582	0/1:72:33,39:33:1169:39:1378:-102.598,0,-83.7569	0/1:22:7,15:7:240:15:531:-41.4972,0,-15.3112	0/1:99:26,73:26:878:73:2620:-206.233,0,-49.5012	0/1:45:14,31:14:485:31:1074:-83.4013,0,-29.8413	0/1:126:51,71:51:1773:71:2540:-191.702,0,-122.668	0/1:100:54,46:54:1921:46:1640:-117.718,0,-143.019
chr07	16870732	.	T	A,C	169406	PASS	AB=0.680345,0.318916;ABP=2295.52,2314.36;AC=96,92;AF=0.510638,0.489362;AN=188;AO=5600,2595;CIGAR=1X,1X;DP=8201;DPB=8201;DPRA=0,22.0349;EPP=11285.1,5187.03;EPPR=3.0103;GTI=10;LEN=1,1;MEANALT=2.03191,2.04301;MQM=58.6084,58.506;MQMR=60;NS=94;NUMALT=2;ODDS=8098.27;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=200780,92483;QR=72;RO=2;RPL=103,53;RPP=11285.1,5187.03;RPPR=3.0103;RPR=5497,2542;RUN=1,1;SAF=5600,2595;SAP=12163.3,5637.98;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:59:0,40,19:0:0:40,19:1436,684:-173.178,-56.1423,-44.1011,-117.395,0,-111.675	1/2:59:0,46,13:0:0:46,13:1652,462:-172.32,-37.997,-24.1496,-134.679,0,-130.765	1/2:239:0,162,77:0:0:162,77:5828,2726:-697.591,-222.399,-173.633,-475.547,0,-452.367	1/2:213:1,161,51:1:36:161,51:5784,1825:-616.935,-145.719,-100.191,-468.578,0,-456.162	1/2:63:0,44,19:0:0:44,19:1584,684:-185.245,-56.0549,-42.8095,-129.55,0,-123.83	1/2:23:0,15,8:0:0:15,8:532,280:-66.4772,-23.1311,-18.6156,-43.6976,0,-41.2894	1/2:97:0,50,47:0:0:50,47:1796,1676:-278.36,-132.211,-117.16,-146.5,0,-132.352	1/1:82:0,75,7:0:0:75,7:2691,248:-242.019,-22.5773,0,-221.817,-2.02027,-219.71	1/2:95:0,74,21:0:0:74,21:2660,748:-278.006,-61.2952,-39.019,-217.067,0,-210.745	1/2:56:0,43,13:0:0:43,13:1548,464:-164.33,-38.1841,-25.2398,-126.504,0,-122.59	1/2:36:0,29,7:0:0:29,7:1044,252:-106.068,-20.9217,-12.1919,-85.5061,0,-83.3989	1/2:99:0,56,43:0:0:56,43:2016,1513:-286.293,-121.804,-104.946,-164.841,0,-151.897	1/2:37:0,18,19:0:0:18,19:648,684:-108.284,-56.1708,-50.7522,-52.471,0,-46.7514	1/2:25:0,21,4:0:0:21,4:756,144:-73.7504,-12.1095,-5.78787,-62.0007,0,-60.7966	1/2:55:0,32,23:0:0:32,23:1152,821:-161.22,-67.2204,-57.5875,-94.3572,0,-87.4335	1/2:31:0,22,9:0:0:22,9:792,324:-91.3803,-26.7966,-20.1739,-64.9435,0,-62.2342	1/2:27:0,20,7:0:0:20,7:720,252:-79.6621,-20.9217,-14.9011,-59.1001,0,-56.9929	1/2:22:0,14,8:0:0:14,8:504,288:-64.9745,-23.8592,-19.6447,-41.4751,0,-39.0669	1/2:26:0,16,10:0:0:16,10:576,360:-76.7024,-29.7045,-24.888,-47.3576,0,-44.3473	1/2:149:0,112,37:0:0:112,37:4028,1300:-434.281,-106.066,-72.351,-328.568,0,-317.43	1/2:155:0,110,45:0:0:110,45:3956,1603:-453.615,-130.964,-97.8502,-323.009,0,-309.462	1/2:152:0,104,47:0:0:104,47:3740,1692:-441.955,-137.165,-105.858,-304.791,0,-290.642	1/2:92:0,76,16:0:0:76,16:2729,568:-267.509,-46.6354,-23.7571,-221.229,0,-216.413	1/2:74:0,59,15:0:0:59,15:2108,536:-215.894,-44.0522,-26.2914,-172.199,0,-167.684	1/2:72:0,55,17:0:0:55,17:1975,608:-210.788,-49.9274,-33.3707,-161.218,0,-156.101	1/2:242:0,160,82:0:0:160,82:5740,2923:-704.612,-237.41,-189.245,-467.558,0,-442.874	1/2:218:0,124,94:0:0:124,94:4448,3362:-635.185,-272.484,-235.156,-363.057,0,-334.76	1/2:27:0,14,13:0:0:14,13:504,464:-79.2522,-38.1841,-33.9697,-41.4261,0,-37.5127	1/2:227:0,177,50:0:0:177,50:6334,1781:-660.03,-144.748,-91.4659,-515.637,0,-500.585	1/2:97:0,68,29:0:0:68,29:2444,1034:-283.679,-84.6048,-64.1347,-199.431,0,-190.702	1/2:91:0,77,14:0:0:77,14:2760,504:-265.916,-41.4252,-18.2459,-224.85,0,-220.636	1/2:27:0,19,8:0:0:19,8:669,288:-78.2444,-23.7868,-18.0672,-54.8144,0,-52.4061	1/2:66:0,41,25:0:0:41,25:1461,887:-191.579,-72.564,-60.2218,-119.37,0,-111.844	1/2:10:0,7,3:0:0:7,3:252,108:-29.666,-9.11335,-7.00614,-20.911,0,-20.0079	1/2:26:0,19,7:0:0:19,7:684,252:-76.7013,-20.9039,-15.1843,-56.157,0,-54.0498	1/2:43:0,29,14:0:0:29,14:1044,500:-126.195,-41.0076,-32.2777,-85.5449,0,-81.3305	1/2:174:0,109,65:0:0:109,65:3916,2305:-507.006,-187.798,-154.985,-319.564,0,-299.997	1/2:151:0,101,50:0:0:101,50:3601,1792:-439.74,-146.475,-116.071,-293.622,0,-278.571	1/2:38:0,30,8:0:0:30,8:1080,288:-111.852,-23.8305,-14.7996,-88.3806,0,-85.9723	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:120:0,77,43:0:0:77,43:2756,1544:-350.927,-126.29,-103.111,-224.995,0,-212.051	1/2:52:0,33,19:0:0:33,19:1188,684:-153.102,-56.1674,-46.2334,-97.2946,0,-91.575	1/2:164:0,120,44:0:0:120,44:4304,1544:-476.462,-125.65,-89.5267,-351.164,0,-337.919	1/2:42:0,28,14:0:0:28,14:1008,504:-123.678,-41.4477,-33.0189,-82.5901,0,-78.3757	1/2:43:0,33,10:0:0:33,10:1188,360:-126.485,-29.734,-19.8,-97.111,0,-94.1007	1/2:101:0,57,44:0:0:57,44:2052,1580:-296.366,-129.097,-111.938,-167.628,0,-154.382	1/2:85:0,67,18:0:0:67,18:2393,648:-248.2,-53.2333,-33.0643,-195.326,0,-189.908	1/2:180:0,107,72:0:0:107,72:3840,2575:-522.712,-209.673,-177.463,-313.039,0,-291.365	1/2:105:0,64,41:0:0:64,41:2300,1463:-307.193,-119.623,-100.357,-187.928,0,-175.585	1/2:86:0,69,17:0:0:69,17:2484,612:-252.907,-50.2734,-29.5024,-202.993,0,-197.875	1/2:177:0,101,76:0:0:101,76:3605,2728:-515.4,-221.816,-191.412,-293.941,0,-271.063	1/2:14:0,10,4:0:0:10,4:352,135:-39.8707,-11.2784,-8.26809,-28.9336,0,-27.7294	1/2:137:0,91,46:0:0:91,46:3272,1652:-401.998,-135.09,-107.697,-267.266,0,-253.419	1/2:27:0,16,11:0:0:16,11:576,388:-78.7214,-31.8455,-27.029,-47.2305,0,-43.9192	1/2:9:0,8,1:0:0:8,1:284,36:-26.4331,-3.29724,-0.889005,-23.4951,0,-23.1941	1/2:120:0,107,13:0:0:107,13:3829,453:-349.168,-37.18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chr07	16870738	.	T	C	32143.6	PASS	AB=0.319491;ABP=2292.9;AC=93;AF=0.494681;AN=188;AO=2585;CIGAR=1X;DP=8095;DPB=8095;DPRA=21.75;EPP=5607.58;EPPR=11909.3;GTI=1;LEN=1;MEANALT=1.03226;MQM=58.47;MQMR=58.6247;NS=94;NUMALT=1;ODDS=77.7394;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92158;QR=197355;RO=5507;RPL=2584;RPP=5607.58;RPPR=11909.3;RPR=1;RUN=1;SAF=2585;SAP=5616.27;SAR=0;SRF=5507;SRP=11961.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:41,18:41:1463:18:644:-40.5013,0,-114.103	0/1:57:44,13:44:1568:13:468:-25.2784,0,-123.811	0/1:236:160,76:160:5737:76:2723:-174.241,0,-445.13	0/1:212:161,51:161:5788:51:1825:-100.551,0,-456.881	0/1:62:43,19:43:1525:19:684:-43.1106,0,-118.821	0/1:23:15,8:15:532:8:271:-17.7957,0,-41.2894	0/1:97:49,48:49:1760:48:1720:-120.368,0,-129.114	0/1:80:72,8:72:2569:8:279:-1.36513,0,-207.353	0/1:94:73,21:73:2624:21:739:-38.5071,0,-207.998	0/1:51:38,13:38:1364:13:468:-27.1071,0,-107.553	0/1:36:29,7:29:1044:7:248:-11.8271,0,-83.3989	0/1:98:54,44:54:1940:44:1549:-108.296,0,-145.362	0/1:35:16,19:16:576:19:680:-50.9931,0,-40.876	0/1:25:21,4:21:756:4:140:-5.41883,0,-60.7966	0/1:55:32,23:32:1152:23:828:-58.1837,0,-87.4335	0/1:31:22,9:22:788:9:324:-20.1739,0,-61.8736	0/1:28:21,7:21:744:7:252:-14.6001,0,-58.8494	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0669	0/1:27:16,11:16:576:11:396:-27.8254,0,-44.0463	0/1:148:112,36:112:4011:36:1288:-71.0637,0,-316.244	0/1:155:108,47:108:3869:47:1652:-102.264,0,-301.636	0/1:152:103,49:103:3708:49:1732:-109.51,0,-287.8	0/1:93:77,16:77:2760:16:561:-22.8213,0,-217.834	0/1:72:57,15:57:2040:15:521:-25.5245,0,-162.168	0/1:71:54,17:54:1928:17:612:-34.0226,0,-151.913	0/1:235:155,80:155:5557:80:2867:-186.312,0,-428.659	0/1:217:122,95:122:4372:95:3361:-235.338,0,-328.223	0/1:27:14,13:14:504:13:464:-33.9697,0,-37.5127	0/1:224:174,50:174:6239:50:1788:-93.0011,0,-493.072	0/1:96:67,29:67:2408:29:1030:-64.0753,0,-187.784	0/1:89:75,14:75:2680:14:504:-18.8479,0,-214.086	0/1:28:20,8:20:716:8:288:-17.7662,0,-56.3389	0/1:65:40,25:40:1440:25:868:-58.8076,0,-110.259	0/1:10:7,3:7:252:3:108:-7.00614,0,-20.0079	0/1:25:18,7:18:644:7:252:-15.4854,0,-50.7511	0/1:44:30,14:30:1076:14:504:-32.3386,0,-83.9075	0/1:168:106,62:106:3799:62:2220:-149.131,0,-291.286	0/1:150:100,50:100:3592:50:1796:-116.768,0,-278.007	0/1:37:29,8:29:1044:8:288:-15.1006,0,-83.0349	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:119:77,42:77:2760:42:1495:-99.0033,0,-212.712	0/1:51:33,18:33:1188:18:635:-42.1211,0,-91.8761	0/1:163:120,42:120:4304:42:1504:-85.5334,0,-338.323	0/1:40:27,13:27:968:13:460:-29.6877,0,-75.3809	0/1:43:32,11:32:1148:11:392:-22.6758,0,-90.5019	0/1:100:57,43:57:2040:43:1544:-109,0,-153.607	0/1:83:65,18:65:2328:18:633:-32.3096,0,-184.664	0/1:179:106,73:106:3796:73:2609:-180.861,0,-287.743	0/1:105:64,41:64:2285:41:1472:-101.168,0,-174.248	0/1:87:70,17:70:2520:17:608:-28.8399,0,-200.768	0/1:172:97,75:97:3469:75:2692:-189.68,0,-260.337	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5184	0/1:137:92,45:92:3304:45:1605:-103.466,0,-256.298	0/1:26:15,11:15:540:11:396:-28.0535,0,-40.9833	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:117:103,14:103:3686:14:491:-9.30061,0,-296.459	0/1:65:40,25:40:1436:25:877:-58.9125,0,-107.745	0/1:22:18,4:18:648:4:140:-6.29976,0,-51.9101	0/1:28:18,10:18:644:10:360:-24.1291,0,-49.837	0/1:55:40,15:40:1432:15:540:-32.3439,0,-112.55	0/1:93:50,43:50:1774:43:1527:-109.202,0,-131.784	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1282	0/1:175:125,49:125:4496:49:1756:-105.65,0,-351.69	0/1:155:106,49:106:3782:49:1751:-110.32,0,-293.803	0/1:46:40,6:40:1436:6:216:-5.94313,0,-115.651	0/1:109:73,36:73:2628:36:1288:-83.3655,0,-203.774	0/1:178:126,52:126:4513:52:1868:-114.413,0,-352.202	0/1:142:94,48:94:3368:48:1706:-110.975,0,-260.285	0/1:34:21,13:21:756:13:468:-32.1709,0,-58.0963	0/1:93:59,34:59:2116:34:1224:-82.4713,0,-162.699	0/1:60:36,24:36:1288:24:860:-59.6169,0,-97.614	0/1:30:24,6:24:845:6:207:-9.93599,0,-67.2744	0/1:177:140,37:140:5017:37:1315:-65.3243,0,-398.226	0/1:75:66,9:66:2353:9:324:-6.92861,0,-189.434	0/1:111:84,27:84:3012:27:960:-52.7747,0,-237.701	0/1:131:98,33:98:3516:33:1171:-65.6137,0,-277.124	0/1:155:84,71:84:3020:71:2544:-182.494,0,-224.852	0/1:79:59,20:59:2116:20:716:-40.9863,0,-166.899	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:85:54,31:54:1936:31:1107:-74.3526,0,-148.929	0/1:125:77,48:77:2756:48:1711:-116.512,0,-210.596	0/1:244:141,103:141:5015:103:3655:-255.521,0,-377.424	0/1:43:31,12:31:1112:12:432:-26.2769,0,-86.8421	0/1:40:22,18:22:784:18:648:-46.6107,0,-58.7943	0/1:13:7,6:7:252:6:207:-15.0535,0,-19.1128	0/1:84:64,20:64:2304:20:711:-39.0291,0,-182.276	0/1:22:15,7:15:536:7:248:-16.0415,0,-41.9506	0/1:59:28,31:28:1004:31:1092:-80.7436,0,-72.854	0/1:72:39,33:39:1400:33:1184:-85.0805,0,-104.58	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3119	0/1:94:70,24:70:2503:24:837:-47.3392,0,-197.213	0/1:44:31,13:31:1116:13:468:-28.4637,0,-87.4556	0/1:125:73,51:73:2616:51:1794:-124.022,0,-198.058	0/1:99:47,52:47:1684:52:1868:-138.552,0,-121.978
chr07	17022664	.	CGCG	CGCC,TGCC	75334.2	PASS	AB=0.522918,0.471661;ABP=12.2666,17.1639;AC=132,50;AF=0.725275,0.274725;AN=182;AO=2640,961;CIGAR=3M1X,1X2M1X;DP=3619;DPB=3619;DPRA=0,1.07972;EPP=5727.01,2081.12;EPPR=9.52472;GTI=1;LEN=1,4;MEANALT=1.75824,2.18519;MQM=59.9886,59.7128;MQMR=60;NS=91;NUMALT=2;ODDS=0.0716485;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=93584,33589;QR=73;RO=3;RPL=1,1;RPP=5727.01,2081.12;RPPR=9.52472;RPR=2639,960;RUN=1,1;SAF=0,0;SAP=5735.7,2089.8;SAR=2640,961;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:28:0,19,9:0:0:19,9:680,323:-82.157,-26.7058,-20.9862,-55.8096,0,-53.1003	1/2:17:0,11,6:0:0:11,6:373,204:-47.1277,-16.8833,-13.572,-30.5839,0,-28.7777	1/2:30:0,16,13:0:0:16,13:561,461:-83.37,-37.7155,-32.899,-45.8061,0,-41.8927	1/2:47:0,29,18:0:0:29,18:1018,634:-134.811,-51.9623,-43.2325,-83.2006,0,-77.782	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:17:1,16,0:1:22:16,0:576,0:-49.9751,-2.91758,0,-50.2761,-4.81648,-51.9468	1/1:36:0,35,0:0:0:35,0:1241,0:-111.74,-10.5361,0,-111.74,-10.5361,-111.74	1/2:51:0,33,17:0:0:33,17:1184,583:-143.955,-47.3677,-37.4337,-96.6327,0,-91.5152	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/2:36:0,26,10:0:0:26,10:924,343:-103.494,-28.1896,-20.3628,-75.6509,0,-72.6406	1/1:40:0,40,0:0:0:40,0:1415,0:-127.647,-12.0412,0,-127.647,-12.0412,-127.647	1/1:61:0,61,0:0:0:61,0:2124,0:-191.425,-18.3628,0,-191.425,-18.3628,-191.425	1/2:79:0,29,49:0:0:29,49:1009,1707:-220.916,-138.875,-130.145,-82.1071,0,-67.3567	1/2:26:0,17,9:0:0:17,9:599,316:-74.8386,-26.0695,-20.9519,-49.1206,0,-46.4113	1/2:43:0,17,26:0:0:17,26:608,904:-123.428,-73.8473,-68.7298,-49.9345,0,-42.1077	1/1:53:1,52,0:1:26:52,0:1860,0:-165.08,-13.3548,0,-165.381,-15.6536,-167.418	1/1:14:0,14,0:0:0:14,0:468,0:-42.4381,-4.21442,0,-42.4381,-4.21442,-42.4381	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/2:19:0,10,9:0:0:10,9:356,301:-53.7316,-24.7052,-21.6949,-29.3709,0,-26.6617	1/2:33:0,26,7:0:0:26,7:932,252:-96.9343,-20.9217,-13.095,-76.3721,0,-74.2649	1/1:23:0,23,0:0:0:23,0:807,0:-72.9492,-6.92369,0,-72.9492,-6.92369,-72.9492	1/2:43:0,18,25:0:0:18,25:640,871:-123.251,-71.1787,-65.7602,-52.4242,0,-44.8985	1/1:55:0,55,0:0:0:55,0:1963,0:-176.945,-16.5567,0,-176.945,-16.5567,-176.945	1/2:14:0,5,8:0:0:5,8:180,264:-36.1151,-21.4142,-19.909,-14.7786,0,-12.3704	1/2:15:0,11,4:0:0:11,4:383,131:-42.0685,-10.9095,-7.59814,-31.4919,0,-30.2878	1/2:76:0,46,30:0:0:46,30:1648,1077:-222.615,-88.2123,-74.3649,-134.761,0,-125.73	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:28:0,28,0:0:0:28,0:995,0:-89.864,-8.42884,0,-89.864,-8.42884,-89.864	1/2:79:0,40,39:0:0:40,39:1420,1398:-230.078,-114.379,-102.338,-116.056,0,-104.315	1/1:55:0,54,1:0:0:54,1:1924,36:-173.075,-16.2556,0,-170.138,-12.9584,-169.837	1/1:54:0,54,0:0:0:54,0:1919,0:-172.986,-16.2556,0,-172.986,-16.2556,-172.986	1/2:5:0,4,1:0:0:4,1:129,36:-13.6685,-3.29724,-2.09312,-10.7235,0,-10.4225	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:5:0,4,1:0:0:4,1:140,36:-14.6799,-3.29724,-2.09312,-11.7405,0,-11.4394	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:145:0,71,74:0:0:71,74:2469,2584:-410.495,-209.756,-188.383,-201.087,0,-178.811	1/2:49:0,39,10:0:0:39,10:1379,354:-141.503,-29.1896,-17.4494,-112.667,0,-109.657	1/2:24:0,12,12:0:0:12,12:415,422:-68.396,-34.6766,-31.0642,-34.0679,0,-30.4556	.:.:.:.:.:.:.:.	1/2:45:0,25,20:0:0:25,20:896,677:-128.287,-55.1996,-47.6739,-73.4346,0,-67.414	1/2:16:0,5,11:0:0:5,11:176,391:-46.5434,-32.2164,-30.7113,-14.6799,0,-11.3685	1/2:25:0,13,11:0:0:13,11:455,396:-69.3243,-32.3074,-28.394,-37.0763,0,-33.7649	1/2:50:0,19,31:0:0:19,31:665,1089:-143.088,-88.9848,-83.2652,-54.4532,0,-45.1213	1/2:44:0,21,23:0:0:21,23:735,822:-127.176,-67.3796,-61.0579,-60.1498,0,-53.2261	1/1:68:0,68,0:0:0:68,0:2436,0:-219.495,-20.47,0,-219.495,-20.47,-219.495	1/1:47:0,45,0:0:0:45,0:1599,0:-143.883,-13.5464,0,-143.883,-13.5464,-143.883	1/2:60:0,33,26:0:0:33,26:1179,923:-171.322,-75.1947,-65.2607,-96.1235,0,-88.2967	1/1:93:0,93,0:0:0:93,0:3314,0:-298.478,-27.9958,0,-298.478,-27.9958,-298.478	1/2:34:0,15,19:0:0:15,19:540,665:-98.5124,-54.4468,-49.9313,-44.4211,0,-38.7015	1/2:49:0,31,18:0:0:31,18:1108,637:-142.584,-52.24,-42.9081,-90.6991,0,-85.2805	.:.:.:.:.:.:.:.	1/2:22:0,15,7:0:0:15,7:540,251:-64.8929,-20.8306,-16.3152,-44.4211,0,-42.3139	1/1:41:0,41,0:0:0:41,0:1447,0:-130.525,-12.3422,0,-130.525,-12.3422,-130.525	1/2:9:0,4,5:0:0:4,5:144,171:-25.9785,-14.2208,-13.0167,-12.1095,0,-10.6043	1/2:53:0,37,16:0:0:37,16:1309,548:-151.44,-44.814,-33.6759,-106.971,0,-102.155	1/2:24:0,14,10:0:0:14,10:480,337:-66.6149,-27.6448,-23.4304,-39.3094,0,-36.2991	1/2:7:0,6,1:0:0:6,1:216,36:-20.9217,-3.29724,-1.49106,-17.9843,0,-17.6833	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:51:0,51,0:0:0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chr07	17467210	.	T	C	18644.6	PASS	AB=0.47112;ABP=21.4478;AC=54;AF=0.290323;AN=186;AO=1204;CIGAR=1X;DP=4511;DPB=4511;DPRA=0.957997;EPP=2617.46;EPPR=7153.69;GTI=3;LEN=1;MEANALT=1.03704;MQM=54.1321;MQMR=59.666;NS=93;NUMALT=1;ODDS=0.466493;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42156;QR=117757;RO=3305;RPL=1204;RPP=2617.46;RPPR=7171.04;RPR=0;RUN=1;SAF=1204;SAP=2617.46;SAR=0;SRF=3301;SRP=7145.03;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:19,4:19:669:4:144:-6.35646,0,-53.61	0/1:37:26,11:26:902:11:394:-24.0738,0,-70.3158	0/1:60:20,40:20:712:40:1423:-109.718,0,-46.3285	0/1:111:63,48:63:2256:48:1686:-118.26,0,-169.879	0/1:8:7,1:7:252:1:36:-1.18493,0,-20.6207	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0824	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.1	0/1:60:29,31:29:1032:31:1085:-79.5992,0,-75.0173	0/0:52:52,0:52:1864:0:0:0,-15.6536,-167.975	0/1:30:18,12:18:648:12:410:-28.1752,0,-49.6182	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.914	0/0:90:90,0:90:3200:0:0:0,-27.0927,-288.202	0/1:60:25,35:25:892:35:1229:-92.0943,0,-62.5297	0/1:33:18,15:18:640:15:519:-37.0452,0,-47.9907	0/1:64:38,26:38:1360:26:897:-61.438,0,-103.434	0/0:61:61,0:61:2149:0:0:0,-18.3628,-193.676	0/0:34:34,0:34:1208:0:0:0,-10.235,-108.993	0/0:30:30,0:30:1059:0:0:0,-9.0309,-95.6204	0/1:32:20,12:20:708:12:417:-28.1215,0,-54.4126	0/1:38:19,19:19:684:19:651:-47.4183,0,-50.4441	0/0:92:92,0:92:3262:0:0:0,-27.6948,-293.744	0/1:45:8,37:8:288:37:1292:-102.891,0,-12.7211	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.52	0/0:24:22,2:22:792:2:72:0,-0.3938,-64.7701	0/1:36:14,22:14:500:22:770:-58.6911,0,-34.4991	0/1:115:53,61:53:1887:61:2158:-159.696,0,-135.429	0/0:114:114,0:114:4067:0:0:0,-34.3174,-365.996	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.334	0/1:63:32,31:32:1148:31:1069:-77.3579,0,-84.6626	0/1:35:29,6:29:1028:6:216:-9.21917,0,-82.1761	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.938	0/1:8:2,6:2:72:6:212:-16.9913,0,-4.42848	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	0/1:6:2,4:2:64:4:144:-11.474,0,-4.27251	0/1:182:99,83:99:3552:83:2919:-208.016,0,-265.089	0/1:61:28,33:28:985:33:1143:-84.6291,0,-70.5972	0/1:50:22,28:22:792:28:987:-73.6842,0,-56.524	.:.:.:.:.:.:.:.	0/1:59:36,23:36:1267:23:820:-56.0417,0,-96.5647	0/1:32:21,11:21:752:11:364:-23.3943,0,-58.3733	0/1:61:39,22:39:1396:22:780:-51.8216,0,-106.868	0/1:52:23,29:23:816:29:1027:-77.0147,0,-58.1082	0/1:38:17,21:17:612:21:739:-55.2305,0,-43.9743	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.383	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.365	0/1:63:37,26:37:1305:26:924:-64.4574,0,-98.7836	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.202	0/1:44:21,23:21:748:23:799:-58.8854,0,-54.3943	0/1:53:44,9:44:1575:9:308:-12.0862,0,-126.022	0/1:3:2,1:2:72:1:36:-2.69259,0,-5.93363	0/1:27:9,18:9:316:18:627:-47.9943,0,-20.651	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.198	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9586	0/1:71:44,27:44:1584:27:957:-64.6084,0,-121.409	0/1:36:14,22:14:504:22:775:-59.1505,0,-34.854	0/1:11:9,2:9:324:2:72:-3.52348,0,-26.1936	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.241	0/0:102:102,0:102:3630:0:0:0,-30.7051,-326.813	0/1:4:2,2:2:68:2:72:-5.62767,0,-5.2526	0/0:101:101,0:101:3607:0:0:0,-30.404,-324.832	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.063	0/1:27:16,11:16:572:11:396:-27.6778,0,-43.6843	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.285	0/1:78:31,47:31:1108:47:1634:-123.463,0,-76.5491	0/1:29:13,16:13:468:16:564:-42.1478,0,-33.7251	0/0:38:38,0:38:1337:0:0:0,-11.4391,-120.628	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:37:24,13:24:847:13:468:-31.2469,0,-65.4106	0/1:10:8,2:8:284:2:72:-3.73316,0,-22.6999	0/0:84:84,0:84:2991:0:0:0,-25.2865,-269.316	0/1:50:32,17:32:1140:17:581:-37.035,0,-87.8389	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.729	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.108	0/1:47:26,21:26:928:21:724:-50.7924,0,-69.6817	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.288	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6673	0/1:37:17,20:17:586:20:701:-52.0552,0,-41.9214	0/1:94:50,44:50:1780:44:1554:-111.573,0,-132.186	0/1:62:27,35:27:959:35:1207:-89.6537,0,-67.9284	0/1:51:26,25:26:936:25:850:-61.4018,0,-69.2065	0/1:39:19,20:19:676:20:682:-49.9127,0,-49.4231	0/1:120:65,55:65:2313:55:1918:-136.459,0,-172.305	0/0:28:28,0:28:987:0:0:0,-8.42884,-89.1293	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.173	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.836	0/1:19:13,6:13:468:6:212:-13.68,0,-36.7401	0/1:64:38,26:38:1344:26:908:-62.3714,0,-101.991	0/1:70:30,40:30:1068:40:1404:-105.329,0,-75.3576	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.887	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.841
chr07	17565735	.	C	A	41939.5	PASS	AB=0.503811;ABP=3.62261;AC=54;AF=0.287234;AN=188;AO=2466;CIGAR=1X;DP=8584;DPB=8584;DPRA=1.08;EPP=5288.6;EPPR=12966.4;GTI=0;LEN=1;MEANALT=1.06667;MQM=59.9968;MQMR=59.9982;NS=94;NUMALT=1;ODDS=1.54554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88345;QR=218357;RO=6113;RPL=2458;RPP=5288.6;RPPR=12966.4;RPR=8;RUN=1;SAF=0;SAP=5357.86;SAR=2466;SRF=0;SRP=13277.2;SRR=6113;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:76:49,27:49:1747:27:972:-64.9196,0,-134.635	0/1:70:44,26:44:1569:26:921:-62.1331,0,-120.428	0/1:157:77,80:77:2736:80:2842:-208.753,0,-199.22	0/1:172:91,81:91:3249:81:2900:-209.458,0,-240.853	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.956	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:174:174,0:174:6234:0:0:0,-52.3792,-561.151	0/1:107:49,58:49:1760:58:2088:-155.98,0,-126.474	0/0:149:149,0:149:5325:0:0:0,-44.8535,-479.383	0/1:75:34,41:34:1205:41:1457:-108.847,0,-86.1766	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:130:130,0:130:4629:0:0:0,-39.1339,-416.771	0/1:90:40,49:40:1440:49:1755:-131.082,0,-102.746	0/1:63:35,27:35:1260:27:968:-68.4137,0,-94.6818	0/1:90:47,43:47:1684:43:1535:-111.35,0,-124.754	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.72	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:50:28,22:28:1008:22:792:-56.5542,0,-75.9849	0/1:226:112,114:112:4032:114:4084:-299.713,0,-295.033	0/0:176:176,0:176:6266:0:0:0,-52.9813,-564.035	0/1:102:23,79:23:824:79:2809:-222.344,0,-43.7783	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.914	0/1:18:7,11:7:248:11:396:-30.5642,0,-17.2457	0/1:101:44,57:44:1576:57:2027:-152.297,0,-111.728	0/1:194:84,110:84:2965:110:3952:-297.47,0,-208.682	0/0:221:221,0:221:7875:0:0:0,-66.5276,-708.776	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/1:340:151,189:151:5378:189:6753:-505.493,0,-381.801	0/0:87:81,6:81:2888:6:216:0,-6.3991,-240.364	0/0:96:94,2:94:3372:2:72:0,-22.0622,-296.859	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:20:13,7:13:449:7:252:-17.0084,0,-34.7169	0/1:223:118,105:118:4232:105:3763:-271.739,0,-313.929	0/1:58:23,35:23:824:35:1260:-96.2457,0,-57.0236	0/1:53:28,25:28:993:25:892:-64.6445,0,-73.7279	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:119:63,56:63:2264:56:2008:-145.171,0,-168.2	0/1:33:11,22:11:396:22:788:-61.3108,0,-26.0488	0/1:134:64,70:64:2285:70:2517:-186.443,0,-165.572	0/1:76:42,34:42:1512:34:1224:-87.5888,0,-113.496	0/1:81:49,32:49:1760:32:1139:-78.435,0,-134.3	0/0:121:121,0:121:4314:0:0:0,-36.4246,-388.434	0/0:124:122,2:122:4331:2:72:0,-30.491,-383.127	0/1:153:91,62:91:3245:62:2224:-154.367,0,-246.213	0/0:110:109,1:109:3905:1:36:0,-29.515,-348.043	0/1:43:23,20:23:828:20:720:-52.1845,0,-61.8998	0/1:98:49,49:49:1760:49:1760:-129.182,0,-129.183	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:112:56,56:56:2001:56:2016:-147.998,0,-146.646	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:138:84,54:84:2982:54:1932:-132.614,0,-227.068	0/1:73:42,31:42:1512:31:1116:-78.7765,0,-114.399	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7675	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:97:97,0:97:3469:0:0:0,-29.1999,-312.42	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:124:124,0:124:4413:0:0:0,-37.3277,-397.343	0/0:151:149,1:149:5317:1:36:0,-41.9161,-475.066	0/1:48:23,25:23:820:25:900:-66.8716,0,-59.6731	0/0:86:86,0:86:3032:0:0:0,-25.8886,-273.106	0/1:143:75,68:75:2650:68:2444:-177.167,0,-195.697	0/1:119:44,75:44:1576:75:2679:-205.532,0,-106.309	0/0:48:46,2:46:1648:2:72:0,-7.61272,-141.772	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.759	0/1:49:22,27:22:779:27:972:-73.0474,0,-55.6816	0/1:28:11,17:11:396:17:603:-46.1707,0,-27.5539	0/0:192:192,0:192:6854:0:0:0,-57.7978,-616.928	0/1:89:42,47:42:1512:47:1688:-125.415,0,-109.583	0/0:181:180,0:180:6426:0:0:0,-54.1854,-578.066	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/1:75:46,29:46:1652:29:1036:-70.9767,0,-126.391	0/0:68:67,1:67:2397:1:36:0,-16.8718,-212.387	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:87:86,1:86:3040:1:36:0,-22.5913,-270.232	0/1:101:44,57:44:1572:57:2035:-153.018,0,-111.368	0/1:188:87,101:87:3105:101:3628:-270.13,0,-223.082	0/1:70:33,37:33:1169:37:1332:-99.1103,0,-84.4432	0/1:95:39,56:39:1400:56:2012:-152.755,0,-97.7013	0/1:64:36,28:36:1296:28:1008:-71.7704,0,-97.678	0/1:162:90,72:90:3232:72:2592:-184.761,0,-242.334	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/0:111:111,0:111:3968:0:0:0,-33.4143,-357.309	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.034	0/1:40:24,16:24:860:16:567:-39.3195,0,-65.6806	0/1:115:63,51:63:2256:51:1819:-129.313,0,-168.626	0/1:94:35,59:35:1256:59:2124:-163.131,0,-85.0485	0/0:118:118,0:118:4221:0:0:0,-35.5215,-380.069	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536
chr07	17565751	.	TCTG	TCTA	40687.9	PASS	AB=0.496409;ABP=3.55618;AC=54;AF=0.287234;AN=188;AO=2439;CIGAR=3M1X;DP=8660;DPB=8660;DPRA=1.06183;EPP=5299.23;EPPR=13422.7;GTI=1;LEN=1;MEANALT=1.47458;MQM=59.9967;MQMR=59.993;NS=94;NUMALT=1;ODDS=3.81072;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87182;QR=217577;RO=6180;RPL=2439;RPP=5299.23;RPPR=13422.7;RPR=0;RUN=1;SAF=0;SAP=5299.23;SAR=2439;SRF=0;SRP=13422.7;SRR=6180;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:76:49,27:49:1722:27:972:-64.9196,0,-132.385	0/1:72:45,26:45:1585:26:913:-60.809,0,-121.266	0/1:158:78,79:78:2739:79:2821:-206.506,0,-199.131	0/1:172:91,80:91:3179:80:2860:-205.802,0,-234.501	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:55:53,0:53:1852:0:0:0,-15.9546,-166.599	0/0:176:176,0:176:6189:0:0:0,-52.9813,-557.118	0/1:104:50,54:50:1736:54:1940:-143.569,0,-125.215	0/0:149:149,0:149:5240:0:0:0,-44.8535,-471.747	0/1:74:34,40:34:1193:40:1417:-105.549,0,-85.3968	0/0:53:53,0:53:1878:0:0:0,-15.9546,-169.297	0/0:131:131,0:131:4602:0:0:0,-39.4349,-414.351	0/1:90:40,50:40:1432:50:1788:-134.11,0,-102.086	0/1:64:35,29:35:1242:29:1036:-74.288,0,-92.8189	0/1:89:46,43:46:1615:43:1548:-112.821,0,-118.846	0/0:76:76,0:76:2696:0:0:0,-22.8783,-242.886	0/0:35:35,0:35:1235:0:0:0,-10.536,-111.454	0/0:46:46,0:46:1622:0:0:0,-13.8474,-146.268	0/1:49:28,21:28:986:21:752:-53.2558,0,-74.3029	0/1:228:115,113:115:4062:113:4060:-296.951,0,-297.136	0/0:177:177,0:177:6228:0:0:0,-53.2823,-560.626	0/1:102:23,79:23:815:79:2813:-222.703,0,-42.9658	0/0:89:89,0:89:3125:0:0:0,-26.7917,-281.477	0/1:17:7,9:7:247:9:309:-22.9661,0,-17.3977	0/1:103:44,59:44:1548:59:2116:-159.698,0,-108.605	0/1:199:88,110:88:3043:110:3948:-295.695,0,-214.287	0/0:229:227,0:227:8011:0:0:0,-68.3338,-720.718	0/0:42:42,0:42:1502:0:0:0,-12.6433,-135.475	0/1:342:150,186:150:5253:186:6672:-499.075,0,-371.438	0/0:87:82,5:82:2880:5:176:0,-10.0046,-243.256	0/0:98:96,2:96:3400:2:72:0,-22.6642,-299.381	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:15:15,0:15:530:0:0:0,-4.51545,-48.0324	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:20:13,7:13:453:7:248:-16.6436,0,-35.0805	0/1:221:116,102:116:4138:102:3656:-263.259,0,-306.621	0/1:57:23,34:23:810:34:1220:-92.9481,0,-56.0615	0/1:53:28,25:28:998:25:896:-65.0058,0,-74.1804	0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8525	0/1:120:64,54:64:2265:54:1908:-136.24,0,-168.358	0/1:33:11,22:11:395:22:788:-61.3108,0,-25.9582	0/1:135:65,70:65:2300:70:2512:-185.693,0,-166.622	0/1:74:41,33:41:1451:33:1176:-83.8715,0,-108.609	0/1:84:51,32:51:1804:32:1148:-78.2846,0,-137.297	0/0:120:120,0:120:4215:0:0:0,-36.1236,-379.536	0/0:128:126,2:126:4408:2:72:0,-31.6951,-390.063	0/1:155:93,62:93:3275:62:2220:-153.405,0,-248.313	0/0:110:110,0:110:3848:0:0:0,-33.1133,-346.523	0/1:44:24,17:24:848:17:608:-42.3503,0,-63.9385	0/1:98:48,50:48:1703:50:1780:-130.981,0,-124.055	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:112:56,54:56:1966:54:1944:-141.816,0,-143.794	0/0:55:55,0:55:1921:0:0:0,-16.5566,-173.165	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:142:85,57:85:2992:57:2006:-138.064,0,-226.769	0/1:72:41,29:41:1442:29:1036:-72.1222,0,-108.642	0/1:13:8,5:8:270:5:180:-12.6387,0,-20.7151	0/0:24:24,0:24:827:0:0:0,-7.22472,-74.7446	0/0:99:99,0:99:3460:0:0:0,-29.802,-311.617	0/0:98:98,0:98:3477:0:0:0,-29.5009,-313.143	0/1:7:5,2:5:174:2:72:-4.72951,0,-13.8945	0/0:126:124,0:124:4355:0:0:0,-37.3277,-391.773	0/0:158:154,3:154:5411:3:104:0,-37.9154,-477.425	0/1:49:24,25:24:855:25:896:-66.2099,0,-62.5205	0/0:88:88,0:88:3105:0:0:0,-26.4906,-279.521	0/1:142:76,66:76:2678:66:2360:-169.912,0,-198.521	0/1:119:45,73:45:1568:73:2612:-199.506,0,-105.587	0/0:49:47,2:47:1646:2:72:0,-7.91375,-141.589	0/0:59:59,0:59:2032:0:0:0,-17.7608,-183.151	0/1:50:22,27:22:749:27:957:-71.3338,0,-52.6137	0/1:28:11,17:11:394:17:604:-46.2618,0,-27.3727	0/0:197:197,0:197:6936:0:0:0,-59.3029,-624.32	0/1:91:43,48:43:1499:48:1720:-127.692,0,-107.809	0/0:186:186,0:186:6581:0:0:0,-55.9916,-592.381	0/0:105:105,0:105:3719:0:0:0,-31.6081,-334.915	0/1:74:47,27:47:1610:27:972:-65.5217,0,-122.91	0/0:69:67,1:67:2369:1:36:0,-17.2316,-209.871	0/0:15:15,0:15:515:0:0:0,-4.51545,-46.6745	0/0:90:89,1:89:3091:1:36:0,-23.4944,-274.821	0/1:101:44,57:44:1568:57:2036:-153.108,0,-111.007	0/1:190:90,99:90:3168:99:3514:-259.323,0,-228.201	0/1:69:32,37:32:1138:37:1324:-98.691,0,-81.958	0/1:94:39,54:39:1366:54:1944:-146.88,0,-94.882	0/1:64:36,28:36:1276:28:1004:-71.4099,0,-95.876	0/1:163:90,73:90:3174:73:2620:-186.979,0,-236.818	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.382	0/0:111:109,0:109:3862:0:0:0,-32.8123,-347.419	0/0:98:98,0:98:3470:0:0:0,-29.5009,-312.513	0/1:39:23,15:23:818:15:536:-36.776,0,-62.1432	0/1:119:65,54:65:2279:54:1923:-137.524,0,-169.549	0/1:93:35,58:35:1229:58:2049:-156.684,0,-82.9167	0/0:119:117,0:117:4142:0:0:0,-35.2205,-372.608	0/0:122:122,0:122:4337:0:0:0,-36.7257,-390.508
chr07	17567479	.	A	T	70830.9	PASS	AB=0.489479;ABP=11.2352;AC=54;AF=0.287234;AN=188;AO=4206;CIGAR=1X;DP=14688;DPB=14688;DPRA=1.11586;EPP=9118.86;EPPR=22640.8;GTI=0;LEN=1;MEANALT=1.01515;MQM=59.9888;MQMR=59.9799;NS=94;NUMALT=1;ODDS=8.40841;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150575;QR=375880;RO=10481;RPL=2;RPP=9118.86;RPPR=22640.8;RPR=4204;RUN=1;SAF=4206;SAP=9136.22;SAR=0;SRF=10481;SRP=22762.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:22,38:22:777:38:1364:-104.999,0,-52.1886	0/1:126:45,81:45:1620:81:2890:-222.405,0,-108.16	0/1:191:109,82:109:3916:82:2933:-206.707,0,-295.135	0/1:280:129,151:129:4602:151:5405:-402.29,0,-330.054	0/0:147:147,0:147:5276:0:0:0,-44.2514,-474.974	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/0:229:228,1:228:8131:1:36:0,-65.3376,-726.895	0/1:160:76,84:76:2720:84:3000:-222.065,0,-196.879	0/0:151:150,1:150:5388:1:36:0,-41.8573,-481.451	0/1:109:60,49:60:2148:49:1752:-125.152,0,-160.775	0/0:164:164,0:164:5900:0:0:0,-49.3689,-531.106	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/1:97:47,50:47:1677:50:1792:-132.363,0,-122.015	0/1:179:87,92:87:3105:92:3300:-243.334,0,-225.792	0/1:80:41,39:41:1468:39:1400:-102.217,0,-108.334	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:142:142,0:142:5104:0:0:0,-42.7463,-459.501	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/1:67:34,33:34:1220:33:1184:-86.6993,0,-89.9378	0/1:303:132,171:132:4744:171:6125:-460.136,0,-335.904	0/0:177:176,1:176:6316:1:36:0,-49.684,-564.932	0/1:172:62,110:62:2217:110:3935:-302.565,0,-148.015	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:146:84,62:84:3012:62:2224:-156.474,0,-227.36	0/1:118:65,53:65:2340:53:1904:-136.116,0,-175.337	0/1:414:219,195:219:7857:195:6983:-503.907,0,-582.526	0/0:345:345,0:345:12385:0:0:0,-103.855,-1113.85	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:470:271,199:271:9732:199:7119:-499.284,0,-734.34	0/0:189:189,0:189:6784:0:0:0,-56.8947,-609.854	0/0:207:206,1:206:7380:1:36:0,-58.7149,-660.648	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.409	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:23:11,12:11:396:12:417:-30.9365,0,-29.0591	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	0/1:276:136,140:136:4887:140:5024:-369.221,0,-356.895	0/1:345:180,165:180:6414:165:5915:-428.602,0,-473.493	0/1:127:53,74:53:1908:74:2645:-200.064,0,-133.767	0/1:12:8,4:8:280:4:144:-9.70126,0,-21.9269	0/1:242:120,122:120:4312:122:4364:-320.084,0,-315.405	0/1:77:44,33:44:1580:33:1188:-84.0493,0,-119.312	0/1:196:107,89:107:3821:89:3183:-227.692,0,-285.084	0/1:100:56,44:56:2012:44:1580:-112.389,0,-151.25	0/1:84:52,32:52:1864:32:1148:-78.3433,0,-142.753	0/0:163:163,0:163:5848:0:0:0,-49.0679,-526.43	0/0:255:255,0:255:9164:0:0:0,-76.7626,-824.727	0/1:269:146,123:146:5225:123:4403:-315.465,0,-389.409	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/1:260:149,111:149:5337:111:3980:-280.122,0,-402.189	0/1:261:147,114:147:5261:114:4070:-287.916,0,-395.056	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:258:115,143:115:4140:143:5125:-383.724,0,-295.116	0/0:73:72,1:72:2580:1:36:0,-18.3769,-228.851	0/1:41:22,19:22:792:19:676:-48.8258,0,-59.2634	0/1:205:114,91:114:4081:91:3243:-230.379,0,-305.763	0/1:101:47,54:47:1688:54:1928:-143.393,0,-121.803	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:43:41,2:41:1476:2:72:0,-6.10757,-126.299	0/0:161:160,1:160:5737:1:36:0,-44.8676,-512.837	0/0:238:238,0:238:8556:0:0:0,-71.6451,-770.033	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/0:305:305,0:305:10956:0:0:0,-91.8141,-985.931	0/0:295:291,4:291:10452:4:144:0,-75.4902,-926.79	0/1:121:68,53:68:2436:53:1904:-135.213,0,-183.071	0/0:138:138,0:138:4960:0:0:0,-41.5421,-446.547	0/1:273:121,151:121:4329:151:5407:-404.52,0,-307.544	0/1:118:38,80:38:1360:80:2860:-222.116,0,-87.1791	0/0:131:130,1:130:4664:1:36:0,-35.8367,-416.322	0/0:122:122,0:122:4369:0:0:0,-36.7257,-393.382	0/1:133:63,70:63:2268:70:2505:-185.664,0,-164.345	0/1:63:28,35:28:989:35:1252:-94.0202,0,-70.3571	0/0:201:199,2:199:7148:2:72:0,-53.6703,-636.31	0/1:86:43,43:43:1548:43:1532:-112.275,0,-113.724	0/0:363:363,0:363:12980:0:0:0,-109.274,-1168.01	0/0:251:250,1:250:8950:1:21:0,-73.4586,-803.377	0/1:230:144,86:144:5176:86:3084:-208.551,0,-396.741	0/0:169:166,3:166:5968:3:108:0,-40.7989,-527.148	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:171:171,0:171:6129:0:0:0,-51.4761,-551.707	0/1:160:79,81:79:2832:81:2898:-212.891,0,-206.954	0/1:416:227,189:227:8129:189:6771:-484.233,0,-606.395	0/1:130:54,76:54:1936:76:2702:-204.285,0,-135.382	0/1:94:48,46:48:1720:46:1652:-120.672,0,-126.789	0/1:105:58,47:58:2084:47:1679:-119.788,0,-156.222	0/1:177:103,74:103:3700:74:2656:-186.003,0,-279.916	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:128:128,0:128:4604:0:0:0,-38.5318,-414.522	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511	0/1:133:66,67:66:2368:67:2404:-176.579,0,-173.341	0/1:280:159,121:159:5720:121:4346:-307.024,0,-430.625	0/1:106:42,64:42:1497:64:2291:-174.542,0,-103.113	0/0:170:170,0:170:6089:0:0:0,-51.1751,-548.109	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18
chr07	18285338	.	G	A	72037.9	PASS	AB=0.422895;ABP=188.859;AC=127;AF=0.682796;AN=186;AO=3577;CIGAR=1X;DP=5701;DPB=5701;DPRA=14.1898;EPP=7571.88;EPPR=4545.93;GTI=3;LEN=1;MEANALT=1.03371;MQM=59.9966;MQMR=59.9991;NS=93;NUMALT=1;ODDS=0.429523;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127648;QR=75765;RO=2120;RPL=23;RPP=7571.88;RPPR=4545.93;RPR=3554;RUN=1;SAF=3577;SAP=7770.37;SAR=0;SRF=2120;SRP=4606.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:16,6:16:568:6:216:-13.1679,0,-44.8292	0/1:39:24,15:24:864:15:532:-36.4729,0,-66.3424	0/1:44:24,20:24:864:20:712:-51.1613,0,-64.8372	0/1:112:61,51:61:2157:51:1813:-129.735,0,-160.68	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:69:0,69:0:0:69:2469:-222.464,-20.7711,0	0/1:72:39,33:39:1404:33:1180:-84.8339,0,-104.985	1/1:23:0,23:0:0:23:819:-74.0324,-6.92369,0	0/1:76:37,39:37:1311:39:1389:-102.43,0,-95.4126	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:89:0,89:0:0:89:3170:-285.524,-26.7917,0	0/1:52:26,26:26:936:26:936:-68.9059,0,-68.9059	0/1:85:33,52:33:1184:52:1846:-140.831,0,-81.2808	0/1:71:34,37:34:1198:37:1328:-98.4491,0,-86.7509	1/1:54:0,54:0:0:54:1909:-172.086,-16.2556,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:38:27,11:27:964:11:396:-24.5436,0,-75.6377	0/1:87:57,30:57:2040:30:1076:-70.9632,0,-157.682	1/1:56:0,56:0:0:56:1979:-178.382,-16.8577,0	0/1:49:38,11:38:1368:11:392:-20.8696,0,-108.67	1/1:30:0,30:0:0:30:1049:-94.7182,-9.0309,0	0/1:80:48,32:48:1720:32:1140:-78.8268,0,-131.003	0/1:42:31,11:31:1104:11:386:-22.4318,0,-87.0274	0/1:145:101,44:101:3605:44:1580:-98.8422,0,-281.006	1/1:110:0,110:0:0:110:3913:-352.363,-33.1133,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:196:135,60:135:4825:60:2149:-134.616,0,-375.342	1/1:55:3,52:3:108:52:1856:-157.245,-6.48148,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:212:105,106:105:3755:106:3787:-277.149,0,-274.272	0/1:101:60,41:60:2156:41:1464:-101.652,0,-163.903	0/1:88:43,45:43:1536:45:1605:-118.247,0,-112.042	0/0:4:3,0:3:108:0:0:0,-0.90309,-9.71534	0/1:55:43,12:43:1540:12:428:-22.3022,0,-122.336	0/1:30:12,18:12:432:18:636:-48.5371,0,-30.1903	0/1:45:27,18:27:964:18:644:-44.7442,0,-73.5305	0/1:77:44,33:44:1584:33:1184:-83.689,0,-119.672	0/1:70:37,33:37:1328:33:1176:-85.0757,0,-98.7501	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	1/1:50:0,50:0:0:50:1777:-160.212,-15.0515,0	0/1:84:32,52:32:1148:52:1845:-141.042,0,-78.3433	1/1:41:0,41:0:0:41:1453:-131.065,-12.3422,0	0/1:74:40,34:40:1412:34:1224:-88.1908,0,-105.101	0/1:108:69,39:69:2476:39:1391:-92.9762,0,-190.582	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:80:71,9:71:2544:9:324:-5.42346,0,-205.128	1/1:16:0,16:0:0:16:556:-50.3653,-4.81648,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:77:45,32:45:1612:32:1133:-79.0973,0,-122.191	0/0:22:21,1:21:752:1:36:0,-3.02438,-64.408	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:5:0,5:0:0:5:169:-15.5415,-1.50515,0	1/1:38:1,37:1:36:37:1309:-114.512,-7.84087,0	1/1:140:1,139:1:36:139:4974:-444.208,-38.5459,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:78:0,78:0:0:78:2778:-250.26,-23.4803,0	1/1:57:0,57:0:0:57:2033:-183.24,-17.1587,0	0/1:66:34,32:34:1205:32:1144:-83.4015,0,-88.8859	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:129:75,54:75:2692:54:1937:-135.774,0,-203.691	0/1:57:47,10:47:1675:10:360:-15.5856,0,-133.878	1/1:32:0,32:0:0:32:1135:-102.459,-9.63296,0	1/1:54:0,54:0:0:54:1908:-171.998,-16.2556,0	0/1:101:48,53:48:1715:53:1891:-140.064,0,-124.231	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	1/1:87:1,86:1:36:86:3073:-273.199,-22.5913,0	0/1:31:18,13:18:640:13:468:-33.1277,0,-48.5974	1/1:119:0,119:0:0:119:4272:-384.657,-35.8226,0	1/1:61:0,61:0:0:61:2182:-196.646,-18.3628,0	0/1:56:32,24:32:1135:24:856:-60.5034,0,-85.6004	1/1:43:1,42:1:36:42:1512:-132.776,-9.34602,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:34:1,33:1:36:33:1183:-103.18,-6.63675,0	0/1:27:16,11:16:576:11:377:-26.1301,0,-44.0472	0/1:144:78,66:78:2788:66:2356:-168.951,0,-207.813	0/1:102:44,57:44:1567:57:2032:-152.389,0,-110.557	0/1:70:34,36:34:1212:36:1292:-95.5117,0,-88.3142	0/1:69:31,38:31:1116:38:1368:-102.65,0,-79.9806	0/1:154:87,67:87:3103:67:2396:-169.538,0,-233.139	1/1:43:0,43:0:0:43:1535:-138.442,-12.9443,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:78:0,78:0:0:78:2790:-251.34,-23.4803,0	0/1:46:22,24:22:788:24:864:-64.2352,0,-57.3974	0/1:136:76,60:76:2691:60:2136:-151.568,0,-201.496	0/1:66:49,17:49:1747:17:608:-35.184,0,-137.646	1/1:52:0,52:0:0:52:1835:-165.429,-15.6536,0	1/1:101:0,101:0:0:101:3601:-324.297,-30.404,0
chr07	18285374	.	A	G	68027.1	PASS	AB=0.421954;ABP=191.466;AC=129;AF=0.68617;AN=188;AO=3487;CIGAR=1X;DP=5593;DPB=5593;DPRA=8.2126;EPP=7574.93;EPPR=4576.13;GTI=4;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=0.91239;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123394;QR=75228;RO=2106;RPL=3485;RPP=7557.57;RPPR=4576.13;RPR=2;RUN=1;SAF=3485;SAP=7557.57;SAR=2;SRF=2106;SRP=4576.13;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:17,6:17:612:6:212:-12.5011,0,-48.4897	0/1:37:23,14:23:815:14:491:-33.383,0,-62.5327	0/1:45:25,20:25:900:20:716:-51.2214,0,-67.7747	0/1:109:60,49:60:2123:49:1744:-124.432,0,-158.526	1/1:13:0,13:0:0:13:457:-41.4626,-3.91339,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:71:0,71:0:0:71:2511:-226.242,-21.3731,0	0/1:73:40,33:40:1432:33:1173:-83.9004,0,-107.202	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:78:37,41:37:1324:41:1441:-106.504,0,-95.9818	1/1:72:0,72:0:0:72:2564:-231.011,-21.6742,0	1/1:83:0,83:0:0:83:2914:-262.495,-24.9855,0	0/1:53:26,27:26:932:27:956:-70.4011,0,-68.2443	0/1:84:34,50:34:1212:50:1755:-132.945,0,-84.0998	0/1:69:32,37:32:1148:37:1324:-98.691,0,-82.8588	1/1:55:0,55:0:0:55:1935:-174.423,-16.5567,0	1/1:69:1,68:1:36:68:2411:-213.648,-17.1728,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:38:27,11:27:964:11:396:-24.5436,0,-75.6377	0/1:84:55,29:55:1972:29:1044:-68.9883,0,-152.468	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	0/1:46:36,10:36:1296:10:352:-18.1708,0,-103.097	1/1:30:0,30:0:0:30:1065:-96.1608,-9.0309,0	0/1:76:45,31:45:1612:31:1096:-76.0717,0,-122.492	0/1:41:31,10:31:1108:10:360:-20.4021,0,-87.6888	0/1:146:102,44:102:3652:44:1546:-95.4786,0,-284.934	1/1:106:0,106:0:0:106:3744:-337.162,-31.9092,0	1/1:50:0,50:0:0:50:1772:-159.763,-15.0515,0	0/1:190:132,58:132:4698:58:2070:-129.374,0,-365.784	1/1:53:3,50:3:108:50:1759:-148.518,-5.87942,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:211:105,106:105:3730:106:3755:-274.633,0,-272.385	0/1:100:59,41:59:2093:41:1464:-101.953,0,-158.535	0/1:87:42,45:42:1499:45:1577:-116.027,0,-109.014	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:55:42,13:42:1508:13:464:-25.5409,0,-119.458	0/1:31:12,19:12:417:19:671:-51.3839,0,-28.5283	0/1:44:26,18:26:936:18:631:-43.8704,0,-71.3141	0/1:75:42,33:42:1486:33:1180:-83.9308,0,-111.456	0/1:68:36,32:36:1279:32:1123:-80.9071,0,-94.9424	1/1:28:0,28:0:0:28:994:-89.7737,-8.42884,0	1/1:47:0,47:0:0:47:1657:-149.415,-14.1484,0	0/1:82:28,54:28:1008:54:1910:-147.492,0,-66.3519	1/1:38:0,38:0:0:38:1338:-120.718,-11.4391,0	0/1:74:42,32:42:1496:32:1148:-81.3536,0,-112.658	0/1:104:67,37:67:2404:37:1323:-88.0642,0,-185.309	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:82:72,10:72:2580:10:356:-7.69679,0,-207.765	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:77:47,30:47:1692:30:1043:-70.9978,0,-129.388	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:131:0,131:0:0:131:4622:-416.149,-39.4349,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:76:0,76:0:0:76:2646:-238.383,-22.8783,0	1/1:57:0,57:0:0:57:2043:-184.141,-17.1587,0	0/1:65:33,32:33:1180:32:1132:-82.6205,0,-86.9411	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	0/1:133:80,53:80:2864:53:1869:-128.448,0,-217.96	0/1:56:46,10:46:1643:10:360:-15.8866,0,-131.3	1/1:34:0,34:0:0:34:1194:-107.763,-10.235,0	1/1:52:0,52:0:0:52:1816:-163.716,-15.6536,0	0/1:101:50,51:50:1784:51:1819:-133.587,0,-130.439	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:84:1,83:1:36:83:2917:-259.166,-21.6882,0	0/1:29:16,13:16:572:13:459:-32.9142,0,-43.0836	1/1:112:0,112:0:0:112:3972:-357.672,-33.7154,0	1/1:62:0,62:0:0:62:2188:-197.184,-18.6639,0	0/1:55:31,24:31:1103:24:847:-59.9915,0,-83.0232	1/1:40:2,38:2:72:38:1336:-113.7,-5.20448,0	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	1/1:33:2,31:2:68:31:1108:-93.5733,-3.47628,0	0/1:25:16,9:16:576:9:320:-21.6166,0,-44.6492	0/1:145:78,67:78:2793:67:2382:-170.989,0,-207.959	0/1:101:44,57:44:1580:57:2035:-153.018,0,-112.088	0/1:72:36,36:36:1275:36:1267:-92.6578,0,-93.3781	0/1:67:31,36:31:1108:36:1267:-94.1623,0,-79.862	0/1:152:89,63:89:3180:63:2222:-154.487,0,-240.668	1/1:43:0,43:0:0:43:1514:-136.552,-12.9443,0	1/1:79:0,79:0:0:79:2784:-250.802,-23.7814,0	1/1:75:0,75:0:0:75:2628:-236.768,-22.5773,0	0/1:48:22,26:22:788:26:932:-69.7494,0,-56.7954	0/1:133:74,59:74:2622:59:2097:-148.961,0,-196.191	0/1:65:48,17:48:1720:17:593:-34.1278,0,-135.519	1/1:40:0,40:0:0:40:1410:-127.196,-12.0412,0	1/1:100:0,100:0:0:100:3539:-318.72,-30.103,0
chr07	18554048	.	C	G	120381	PASS	AB=0.518512;ABP=35.5705;AC=55;AF=0.292553;AN=188;AO=5699;CIGAR=1X;DP=18690;DPB=18690;DPRA=1.1903;EPP=12378.2;EPPR=28175.7;GTI=1;LEN=1;MEANALT=1.09677;MQM=47.0709;MQMR=59.6803;NS=94;NUMALT=1;ODDS=2.59187;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202265;QR=460939;RO=12974;RPL=2864;RPP=3.33074;RPPR=80.4027;RPR=2835;RUN=1;SAF=2864;SAP=3.33074;SAR=2835;SRF=6827;SRP=80.4027;SRR=6147;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:107:48,59:48:1708:59:2107:-138.678,0,-121.796	0/1:251:151,100:151:5364:100:3515:-230.684,0,-407.29	0/1:289:134,155:134:4780:155:5468:-377.099,0,-343.323	0/1:424:188,236:188:6690:236:8379:-575.859,0,-474.423	0/0:206:206,0:206:7329:0:0:0,-62.0122,-659.019	0/0:161:161,0:161:5731:0:0:0,-48.4658,-514.569	0/0:167:167,0:167:5953:0:0:0,-50.272,-535.8	0/1:348:181,167:181:6411:167:5959:-395.297,0,-472.274	0/0:226:226,0:226:8011:0:0:0,-68.0328,-720.868	0/1:204:90,114:90:3164:114:4021:-280.043,0,-223.574	0/0:108:108,0:108:3826:0:0:0,-32.5112,-344.508	0/0:153:152,0:152:5392:0:0:0,-45.7566,-484.859	0/1:138:65,73:65:2303:73:2616:-182.467,0,-165.988	0/1:117:55,62:55:1951:62:2164:-152.183,0,-140.577	0/1:122:62,60:62:2224:60:2113:-142.439,0,-163.698	0/0:102:102,0:102:3635:0:0:0,-30.7051,-327.148	0/0:132:132,0:132:4720:0:0:0,-39.736,-424.942	0/0:101:101,0:101:3586:0:0:0,-30.404,-322.946	0/1:72:36,36:36:1283:36:1296:-90.5015,0,-94.0799	0/1:417:172,245:172:6159:245:8696:-607.014,0,-427.406	0/0:333:333,0:333:11801:0:0:0,-100.243,-1061.33	0/1:302:67,234:67:2365:234:8321:-632.042,0,-122.08	0/0:175:175,0:175:6192:0:0:0,-52.6802,-557.282	0/1:164:94,70:94:3368:70:2468:-158.606,0,-253.65	0/1:193:97,96:97:3429:96:3400:-232.559,0,-250.688	0/1:503:251,252:251:8833:252:8928:-616.859,0,-643.427	0/0:514:513,0:513:18250:0:0:0,-154.428,-1641.44	0/0:68:68,0:68:2400:0:0:0,-20.47,-216.254	0/1:593:280,313:280:9962:313:11139:-767.498,0,-717.88	0/0:297:279,12:279:9918:12:423:0,-53.2339,-857.517	0/0:210:210,0:210:7488:0:0:0,-63.2163,-673.885	0/1:3:2,1:2:72:1:36:-2.34307,0,-5.93363	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.369	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/1:9:5,4:5:180:4:138:-9.39913,0,-13.8428	0/1:19:7,12:7:252:12:428:-30.1409,0,-17.3094	0/1:423:231,192:231:8226:192:6838:-457.9,0,-612.613	0/1:228:111,116:111:3952:116:4102:-284.115,0,-287.171	0/1:131:77,54:77:2764:54:1923:-127.323,0,-209.531	0/1:7:5,2:5:171:2:72:-4.06049,0,-13.6182	0/1:367:199,168:199:7050:168:5949:-393.348,0,-523.891	0/1:63:34,29:34:1216:29:1040:-70.4958,0,-90.6518	0/1:318:157,161:157:5576:161:5744:-382.361,0,-406.053	0/1:166:70,96:70:2479:96:3407:-241.737,0,-173.336	0/1:129:59,70:59:2098:70:2452:-173.438,0,-150.227	0/0:271:271,0:271:9694:0:0:0,-81.5791,-870.778	0/0:267:266,0:266:9453:0:0:0,-80.074,-849.813	0/1:412:219,193:219:7772:193:6920:-462.615,0,-575.454	0/0:268:266,2:266:9404:2:72:0,-73.8393,-839.412	0/1:299:148,151:148:5274:151:5396:-370.53,0,-384.249	0/1:255:121,134:121:4281:134:4736:-316.165,0,-308.612	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:259:118,140:118:4224:140:4984:-348.937,0,-302.124	0/0:98:96,0:96:3400:0:0:0,-28.8989,-305.838	0/1:9:4,5:4:144:5:180:-13.5188,0,-10.6043	0/1:278:157,121:157:5594:121:4294:-278.783,0,-419.761	0/1:113:56,57:56:2008:57:2032:-144.343,0,-146.949	1/1:4:0,4:0:0:4:144:-12.5539,-1.20412,0	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:235:234,0:234:8290:0:0:0,-70.441,-745.866	0/0:217:216,1:216:7631:1:36:0,-61.7252,-683.152	0/1:8:4,4:4:144:4:144:-9.76582,0,-10.8763	0/0:328:327,1:327:11614:1:36:0,-95.1396,-1041.49	0/0:382:379,3:379:13492:3:108:0,-105.302,-1204.21	0/1:174:96,76:96:3407:76:2698:-178.215,0,-254.753	0/0:221:220,1:220:7839:1:36:0,-63.34,-702.248	0/1:285:145,140:145:5087:140:4935:-330.828,0,-372.12	0/1:301:78,223:78:2737:223:7891:-564.584,0,-155.874	0/0:87:87,0:87:3090:0:0:0,-26.1896,-278.286	0/0:132:130,2:130:4611:2:72:0,-32.8992,-408.292	0/1:134:69,65:69:2436:65:2308:-156.821,0,-179.153	0/1:51:15,36:15:521:36:1256:-92.8112,0,-31.8638	0/0:220:220,0:220:7843:0:0:0,-66.2266,-705.746	0/1:180:85,95:85:3030:95:3369:-228.666,0,-218.726	0/0:373:373,0:373:13259:0:0:0,-112.284,-1192.9	0/0:243:243,0:243:8688:0:0:0,-73.1503,-781.437	0/1:386:180,206:180:6423:206:7320:-502.301,0,-461.579	0/0:212:212,0:212:7545:0:0:0,-63.8184,-679.018	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9278	0/0:206:206,0:206:7279:0:0:0,-62.0122,-655.016	0/1:213:90,123:90:3196:123:4346:-308.598,0,-223.708	0/1:387:186,201:186:6596:201:7142:-485.359,0,-477.018	0/1:168:93,75:93:3305:75:2662:-179.738,0,-247.037	0/1:112:65,47:65:2332:47:1656:-109.266,0,-176.424	0/1:164:84,80:84:3004:80:2851:-199.28,0,-221.192	0/1:266:154,112:154:5444:112:3983:-262.737,0,-409.99	0/0:60:60,0:60:2124:0:0:0,-18.0618,-191.429	0/0:149:149,0:149:5268:0:0:0,-44.8535,-474.254	0/0:164:164,0:164:5845:0:0:0,-49.3689,-526.072	0/1:66:30,36:30:1058:36:1275:-88.081,0,-75.6386	0/1:163:87,76:87:3098:76:2691:-178.389,0,-229.955	0/1:145:47,98:47:1664:98:3478:-254.904,0,-106.395	0/0:318:318,0:318:11305:0:0:0,-95.7275,-1017.1	0/0:249:248,1:248:8766:1:36:0,-71.7688,-785.669
chr07	18554063	.	G	A	39002.6	PASS	AB=0.538868;ABP=72.5564;AC=55;AF=0.292553;AN=188;AO=2873;CIGAR=1X;DP=9183;DPB=9183;DPRA=1.13131;EPP=6241.65;EPPR=13434.9;GTI=1;LEN=1;MEANALT=1;MQM=34.0313;MQMR=59.3159;NS=94;NUMALT=1;ODDS=1.30234;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102927;QR=225957;RO=6309;RPL=2873;RPP=6241.65;RPPR=13434.9;RPR=0;RUN=1;SAF=0;SAP=6241.65;SAR=2873;SRF=0;SRP=13702.8;SRR=6309;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:95:46,49:46:1656:49:1760:-112.14,0,-120.713	0/1:94:57,37:57:2048:37:1315:-78.2943,0,-156.26	0/1:164:77,87:77:2764:87:3113:-201.447,0,-199.595	0/1:226:103,123:103:3674:123:4412:-278.113,0,-262.334	0/0:97:97,0:97:3468:0:0:0,-29.1999,-311.668	0/0:79:79,0:79:2836:0:0:0,-23.7814,-254.138	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.216	0/1:185:83,102:83:2980:102:3660:-237.985,0,-212.694	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.823	0/1:92:31,61:31:1116:61:2184:-146.37,0,-73.0569	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.94	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.288	0/1:59:24,35:24:840:35:1256:-83.867,0,-58.1547	0/1:41:16,25:16:576:25:882:-58.8165,0,-39.7367	0/1:65:30,35:30:1067:35:1260:-81.162,0,-76.7377	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.619	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.398	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4815	0/1:28:13,15:13:464:15:540:-35.7189,0,-33.65	0/1:221:87,134:87:3132:134:4807:-311.401,0,-215.379	0/0:189:189,0:189:6733:0:0:0,-56.8947,-605.282	0/1:100:31,69:31:1116:69:2480:-164.211,0,-70.5911	0/0:81:81,0:81:2899:0:0:0,-24.3834,-260.903	0/1:85:44,41:44:1576:41:1470:-91.8243,0,-116.227	0/1:92:43,49:43:1532:49:1756:-113.813,0,-110.447	0/1:172:80,92:80:2876:92:3300:-206.838,0,-206.921	0/0:295:295,0:295:10559:0:0:0,-88.8038,-949.559	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3657	0/1:293:144,149:144:5155:149:5325:-333.127,0,-375.763	0/0:144:133,11:133:4764:11:392:0,-11.9684,-397.117	0/0:94:94,0:94:3345:0:0:0,-28.2968,-301.188	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8217	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:5,2:5:180:2:72:-4.06049,0,-14.4449	0/1:17:8,9:8:288:9:324:-21.5492,0,-21.1499	0/1:159:81,78:81:2900:78:2808:-173.965,0,-212.967	0/1:90:39,51:39:1400:51:1827:-120.103,0,-99.1677	0/1:40:22,18:22:792:18:648:-39.9953,0,-59.5292	0/1:9:7,2:7:248:2:72:-3.45843,0,-19.9549	0/1:175:84,91:84:3011:91:3256:-207.98,0,-218.45	0/1:26:11,15:11:396:15:536:-36.1192,0,-28.0027	0/1:239:123,116:123:4416:116:4157:-263.049,0,-325.49	0/1:65:30,35:30:1063:35:1240:-78.4454,0,-76.357	0/1:49:23,26:23:828:26:923:-59.5189,0,-60.0652	0/0:171:171,0:171:6105:0:0:0,-51.4761,-548.24	0/0:127:126,0:126:4524:0:0:0,-37.9298,-406.128	0/1:168:78,90:78:2778:90:3195:-201.634,0,-199.67	0/0:123:123,0:123:4412:0:0:0,-37.0267,-397.153	0/1:128:68,60:68:2425:60:2160:-130.334,0,-179.43	0/1:164:68,96:68:2440:96:3443:-224.645,0,-170.368	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:141:66,75:66:2352:75:2700:-176.426,0,-169.293	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.375	0/1:5:3,2:3:104:2:72:-4.66255,0,-8.19766	0/1:157:84,73:84:3020:73:2599:-163.087,0,-224.634	0/1:38:23,15:23:828:15:540:-31.9656,0,-63.3765	1/1:2:0,2:0:0:2:72:-6.05649,-0.60206,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.041	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.329	0/1:7:4,3:4:144:3:108:-6.81814,0,-11.1773	0/0:145:145,0:145:5216:0:0:0,-43.6493,-469.527	0/0:165:164,1:164:5846:1:36:0,-46.4823,-522.887	0/1:87:48,39:48:1720:39:1396:-86.6899,0,-128.873	0/0:126:125,1:125:4492:1:36:0,-34.7422,-401.141	0/1:125:45,80:45:1607:80:2863:-190.227,0,-107.228	0/1:200:48,152:48:1719:152:5463:-372.88,0,-94.7036	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.809	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.69	0/1:49:21,28:21:756:28:1008:-65.0895,0,-53.6134	0/1:21:5,16:5:180:16:576:-39.9999,0,-10.2304	0/0:144:144,0:144:5151:0:0:0,-43.3483,-463.569	0/1:124:59,65:59:2120:65:2336:-150.919,0,-153.74	0/0:166:166,0:166:5947:0:0:0,-49.971,-535.005	0/0:127:127,0:127:4547:0:0:0,-38.2308,-408.977	0/1:257:121,136:121:4344:136:4850:-317.459,0,-313.386	0/0:129:129,0:129:4620:0:0:0,-38.8329,-415.874	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5505	0/0:150:150,0:150:5376:0:0:0,-45.1545,-483.786	0/1:122:58,64:58:2080:64:2300:-149.013,0,-150.709	0/1:204:99,105:99:3548:105:3764:-234.85,0,-257.937	0/1:51:24,27:24:860:27:972:-62.4255,0,-62.3101	0/1:48:30,18:30:1076:18:644:-37.0698,0,-82.7034	0/1:39:21,18:21:756:18:648:-37.835,0,-56.5962	0/1:91:52,39:52:1864:39:1387:-82.0764,0,-140.606	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:61:61,0:61:2187:0:0:0,-18.3628,-195.804	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.031	0/1:38:14,24:14:504:24:864:-58.5812,0,-34.2318	0/1:95:49,46:49:1760:46:1648:-104.844,0,-130.042	0/1:53:14,39:14:504:39:1400:-95.3019,0,-29.7435	0/0:198:198,0:198:7049:0:0:0,-59.6039,-634.131	0/0:97:96,1:96:3448:1:36:0,-26.0123,-307.242
chr07	18661013	.	T	A	44398.9	PASS	AB=0.497819;ABP=3.22815;AC=54;AF=0.287234;AN=188;AO=2641;CIGAR=1X;DP=9138;DPB=9138;DPRA=1.15932;EPP=5720.51;EPPR=14087.2;GTI=1;LEN=1;MEANALT=1.09677;MQM=59.9712;MQMR=59.9966;NS=94;NUMALT=1;ODDS=2.45973;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94392;QR=232640;RO=6490;RPL=2639;RPP=5720.51;RPPR=14095.9;RPR=2;RUN=1;SAF=0;SAP=5737.87;SAR=2641;SRF=1;SRP=14087.2;SRR=6489;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:12,16:12:428:16:559:-42.2088,0,-30.43	0/1:141:64,77:64:2296:77:2768:-206.915,0,-164.456	0/1:173:79,94:79:2840:94:3355:-250.089,0,-203.759	0/1:212:110,102:110:3948:102:3632:-263.269,0,-291.692	0/0:97:96,1:96:3452:1:36:0,-25.6016,-307.293	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:187:187,0:187:6704:0:0:0,-56.2926,-603.435	0/1:162:75,87:75:2688:87:3124:-232.619,0,-193.398	0/0:114:114,0:114:4085:0:0:0,-34.3174,-367.834	0/1:99:41,58:41:1442:58:2076:-157.309,0,-100.27	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/1:91:52,39:52:1868:39:1387:-97.7339,0,-141.006	0/1:59:29,30:29:1040:30:1080:-79.7525,0,-76.1536	0/1:74:35,39:35:1256:39:1400:-104.023,0,-91.0691	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:67:33,34:33:1169:34:1224:-90.298,0,-85.3463	0/1:162:74,88:74:2641:88:3156:-235.498,0,-189.168	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/1:86:39,47:39:1404:47:1688:-126.318,0,-100.765	0/0:90:89,1:89:3169:1:36:0,-23.4944,-281.836	0/1:57:31,26:31:1108:26:932:-67.0402,0,-82.8723	0/1:96:59,37:59:2108:37:1328:-90.9234,0,-161.09	0/1:266:113,153:113:4014:153:5460:-411.456,0,-281.374	0/0:256:256,0:256:9196:0:0:0,-77.0637,-827.606	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:231:124,107:124:4448:107:3820:-274.46,0,-330.952	0/0:118:115,3:115:4140:3:108:0,-25.4464,-362.706	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.565	0/1:6:4,2:4:140:2:66:-4.46177,0,-11.1384	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:238:119,119:119:4265:119:4247:-310.765,0,-312.381	0/1:147:70,77:70:2493:77:2738:-202.339,0,-180.37	0/1:86:50,36:50:1796:36:1281:-89.7036,0,-136.034	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:176:106,70:106:3808:70:2495:-171.82,0,-289.935	0/1:51:21,30:21:748:30:1080:-82.1607,0,-52.2926	0/1:111:67,44:67:2408:44:1580:-109.077,0,-183.562	0/1:92:52,40:52:1864:40:1428:-101.123,0,-140.345	0/1:59:32,27:32:1144:27:966:-69.4961,0,-85.5087	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.517	0/0:152:152,0:152:5415:0:0:0,-45.7566,-487.477	0/1:183:86,96:86:3092:96:3435:-254.215,0,-223.359	0/0:135:134,1:134:4778:1:32:0,-37.4397,-426.976	0/1:144:77,67:77:2768:67:2400:-172.909,0,-206.012	0/1:67:43,24:43:1536:24:856:-57.1898,0,-118.364	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:152:76,76:76:2732:76:2732:-200.366,0,-200.366	0/0:70:69,1:69:2484:1:36:0,-17.4738,-220.214	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/1:111:46,65:46:1652:65:2332:-176.721,0,-115.554	0/1:59:26,32:26:928:32:1140:-85.0898,0,-66.0182	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:100:97,3:97:3488:3:108:0,-20.0278,-304.055	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:117:117,0:117:4159:0:0:0,-35.2205,-374.49	0/0:189:189,0:189:6796:0:0:0,-56.8947,-611.708	0/1:50:30,20:30:1076:20:716:-49.7162,0,-82.1014	0/0:118:117,1:117:4204:1:36:0,-31.9233,-374.941	0/1:127:72,55:72:2580:55:1964:-138.804,0,-194.218	0/1:95:38,57:38:1360:57:2034:-154.734,0,-94.1027	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/1:71:37,34:37:1332:34:1215:-88.2826,0,-98.8093	0/1:19:12,7:12:432:7:248:-16.9446,0,-33.5016	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.484	0/1:96:38,58:38:1368:58:2065:-157.202,0,-94.5219	0/0:181:178,2:178:6388:2:72:0,-47.7085,-568.17	0/0:177:177,0:177:6360:0:0:0,-53.2823,-572.487	0/1:140:62,78:62:2220:78:2800:-210.095,0,-157.92	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:133:133,0:133:4753:0:0:0,-40.037,-427.921	0/1:122:60,61:60:2145:61:2180:-159.721,0,-156.571	0/1:213:100,112:100:3592:112:3965:-292.864,0,-259.307	0/1:106:55,51:55:1980:51:1810:-131.271,0,-146.565	0/1:62:27,35:27:968:35:1252:-94.3212,0,-68.7735	0/1:72:37,33:37:1328:33:1179:-84.9855,0,-98.3904	0/1:148:85,63:85:3056:63:2239:-157.213,0,-230.716	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:50:23,27:23:824:27:972:-72.7464,0,-59.4318	0/1:76:57,19:57:2044:19:684:-39.012,0,-161.354	0/1:71:26,45:26:932:45:1616:-124.357,0,-62.8257	0/0:77:77,0:77:2749:0:0:0,-23.1793,-247.651	0/0:139:138,1:138:4960:1:36:0,-38.2449,-442.949
chr07	18662427	.	A	C	32321.5	PASS	AB=0.506121;ABP=4.25979;AC=55;AF=0.292553;AN=188;AO=1956;CIGAR=1X;DP=6547;DPB=6547;DPRA=1.25284;EPP=4250.41;EPPR=9965.73;GTI=1;LEN=1;MEANALT=1.01667;MQM=53.5736;MQMR=59.5133;NS=94;NUMALT=1;ODDS=4.75165;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69534;QR=163377;RO=4588;RPL=0;RPP=4250.41;RPPR=9965.73;RPR=1956;RUN=1;SAF=0;SAP=4250.41;SAR=1956;SRF=0;SRP=9965.73;SRR=4588;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:27,23:27:955:23:824:-59.1459,0,-71.197	0/1:58:32,26:32:1139:26:928:-66.2954,0,-85.3586	0/1:107:65,42:65:2314:42:1461:-99.3767,0,-176.306	0/1:173:91,82:91:3272:82:2915:-208.831,0,-242.56	0/0:60:60,0:60:2123:0:0:0,-18.0618,-191.304	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1044	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2511	0/1:67:28,39:28:996:39:1381:-104.089,0,-68.5064	0/0:84:84,0:84:2995:0:0:0,-25.2865,-269.767	0/1:59:33,26:33:1165:26:928:-65.9406,0,-86.93	0/0:43:43,0:43:1527:0:0:0,-12.9443,-137.709	0/0:113:113,0:113:4016:0:0:0,-34.0164,-361.479	0/1:102:44,58:44:1567:58:2064:-154.731,0,-110.616	0/1:51:22,27:22:779:27:972:-72.6817,0,-55.102	0/1:68:45,23:45:1608:23:811:-52.7236,0,-124.382	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.235	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9244	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:38:19,19:19:675:19:684:-50.3613,0,-49.6181	0/1:72:27,45:27:948:45:1612:-123.284,0,-63.9577	0/0:125:125,0:125:4461:0:0:0,-37.6287,-401.59	0/1:57:11,46:11:396:46:1652:-131.29,0,-18.824	0/0:103:100,3:100:3579:3:108:0,-20.9501,-312.118	0/1:70:43,27:43:1540:27:968:-66.3389,0,-117.809	0/1:42:28,14:28:1008:14:492:-31.9598,0,-78.3931	0/1:196:85,111:85:3015:111:3972:-297.725,0,-212.543	0/0:128:128,0:128:4542:0:0:0,-38.5318,-408.926	0/0:33:33,0:33:1157:0:0:0,-9.93399,-104.434	0/1:113:54,59:54:1924:59:2111:-155.471,0,-139.354	0/0:90:90,0:90:3205:0:0:0,-27.0927,-288.644	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.751	0/1:11:7,4:7:252:4:140:-9.63008,0,-19.3997	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7677	0/1:8:3,5:3:108:5:180:-14.1268,0,-7.66693	0/1:22:13,9:13:468:9:316:-22.125,0,-35.8288	0/1:200:109,91:109:3871:91:3218:-228.558,0,-288.378	0/1:75:32,43:32:1132:43:1544:-116.563,0,-79.59	0/1:49:19,30:19:675:30:1072:-81.788,0,-46.3117	0/1:7:2,5:2:72:5:176:-14.0737,0,-4.72951	0/1:91:44,47:44:1571:47:1684:-124.339,0,-114.287	0/1:38:20,18:20:716:18:631:-45.653,0,-53.3179	0/1:34:16,18:16:576:18:648:-48.3314,0,-41.94	0/1:53:17,36:17:604:36:1283:-99.6104,0,-38.7222	0/1:63:26,37:26:932:37:1307:-98.276,0,-65.213	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.611	0/0:76:75,1:75:2669:1:36:0,-19.2837,-236.81	0/1:124:56,68:56:2008:68:2406:-178.941,0,-143.64	0/0:65:65,0:65:2318:0:0:0,-19.5669,-208.507	0/1:54:21,33:21:756:33:1188:-90.7688,0,-52.1116	0/1:139:52,87:52:1872:87:3088:-235.147,0,-126.915	1/1:3:0,3:0:0:3:108:-10.056,-0.90309,0	0/1:111:70,41:70:2484:41:1446:-96.8948,0,-190.385	0/0:47:47,0:47:1670:0:0:0,-14.1484,-150.568	0/1:7:2,5:2:72:5:180:-14.4278,0,-4.72951	0/1:94:65,29:65:2336:29:1044:-65.8827,0,-182.179	0/1:25:12,13:12:423:13:450:-33.0818,0,-30.8793	0/1:6:3,3:3:108:3:104:-7.88385,0,-8.26259	0/0:7:6,0:6:216:0:0:0,-1.80618,-19.4324	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.511	0/0:83:82,1:82:2890:1:36:0,-21.3941,-256.723	0/1:7:1,6:1:36:6:212:-17.2837,0,-1.49106	0/0:127:126,1:126:4508:1:36:0,-34.6416,-402.243	0/0:206:203,3:203:7280:3:108:0,-52.1128,-645.255	0/1:35:24,11:24:864:11:381:-24.0049,0,-67.3079	0/0:43:43,0:43:1511:0:0:0,-12.9443,-136.279	0/1:119:60,59:60:2129:59:2106:-153.62,0,-155.999	0/1:174:58,116:58:2084:116:4114:-316.427,0,-135.451	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.79	0/0:71:70,1:70:2474:1:36:0,-17.7786,-219.274	0/1:51:34,17:34:1220:17:594:-38.2474,0,-94.7543	0/1:32:18,14:18:640:14:500:-35.6252,0,-48.2791	0/0:98:98,0:98:3468:0:0:0,-29.5009,-312.158	0/1:56:27,29:27:964:29:1035:-76.3836,0,-70.146	0/0:86:86,0:86:3031:0:0:0,-25.8886,-272.76	0/0:78:78,0:78:2778:0:0:0,-23.4803,-250.199	0/1:87:55,32:55:1948:32:1142:-76.7446,0,-149.362	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.649	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.153	0/1:75:47,28:47:1670:28:987:-66.4496,0,-127.984	0/1:144:74,70:74:2639:70:2494:-180.587,0,-194.38	0/1:65:35,30:35:1244:30:1064:-76.3116,0,-92.6582	0/1:85:44,41:44:1576:41:1450:-104.925,0,-116.438	0/1:38:22,16:22:788:16:567:-39.8276,0,-59.7911	0/1:135:67,68:67:2376:68:2410:-175.989,0,-173.443	0/0:30:30,0:30:1059:0:0:0,-9.0309,-95.6195	0/0:62:62,0:62:2206:0:0:0,-18.6639,-198.779	0/0:77:77,0:77:2756:0:0:0,-23.1793,-247.932	0/1:32:15,17:15:532:17:591:-43.8689,0,-38.5801	0/1:95:46,49:46:1616:49:1731:-127.356,0,-117.128	0/1:75:24,51:24:823:51:1808:-139.951,0,-51.611	0/0:103:103,0:103:3659:0:0:0,-31.0061,-329.442	0/0:131:131,0:131:4633:0:0:0,-39.4349,-416.717
chr07	18662457	.	ACA	GCG,GCA	138794	PASS	AB=0.494109,0.500512;ABP=4.18726,3.0192;AC=133,55;AF=0.707447,0.292553;AN=188;AO=4680,1966;CIGAR=1X1M1X,1X2M;DP=6675;DPB=6675.33;DPRA=23.914,1.19756;EPP=10148.1,4254.77;EPPR=7.35324;GTI=2;LEN=3,1;MEANALT=1.89247,2.28333;MQM=59.4547,53.6577;MQMR=59;NS=94;NUMALT=2;ODDS=5.9321;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=164927,69905;QR=72;RO=2;RPL=4678,1964;RPP=10148.1,4254.77;RPPR=7.35324;RPR=2,2;RUN=1,1;SAF=0,0;SAP=10165.5,4272.13;SAR=4680,1966;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:51:0,27,23:0:0:27,23:950,816:-143.522,-66.1966,-58.0688,-77.3181,0,-70.3944	1/2:57:0,32,25:0:0:32,25:1137,900:-166.358,-73.7115,-64.0785,-93.004,0,-85.4783	1/2:109:0,67,42:0:0:67,42:2333,1492:-311.33,-121.73,-101.561,-189.953,0,-177.309	1/2:172:0,93,79:0:0:93,79:3283,2805:-495.072,-227.803,-199.807,-267.622,0,-243.841	1/1:62:0,62,0:0:0:62,0:2177,0:-196.162,-18.6639,0,-196.162,-18.6639,-196.162	1/1:15:0,15,0:0:0:15,0:514,0:-46.5269,-4.51545,0,-46.5269,-4.51545,-46.5269	1/1:30:0,27,0:0:0:27,0:950,0:-85.4658,-8.12781,0,-85.4658,-8.12781,-85.4658	1/2:70:0,27,42:0:0:27,42:934,1487:-196.85,-120.954,-112.826,-76.0709,0,-63.4277	1/1:88:0,88,0:0:0:88,0:3034,0:-273.275,-26.4906,0,-273.275,-26.4906,-273.275	1/2:58:0,31,24:0:0:31,24:1086,864:-158.761,-70.4119,-61.08,-88.3843,0,-81.1596	1/1:43:0,43,0:0:0:43,0:1517,0:-136.809,-12.9443,0,-136.809,-12.9443,-136.809	1/1:115:0,115,0:0:0:115,0:4025,0:-362.168,-34.6185,0,-362.168,-34.6185,-362.168	1/2:102:0,45,57:0:0:45,57:1595,2031:-295.227,-165.289,-151.742,-130.293,0,-113.134	1/2:51:0,23,28:0:0:23,28:812,1008:-148.662,-82.5821,-75.6584,-66.4361,0,-58.0073	1/2:69:1,46,22:1:36:46,22:1635,788:-193.975,-61.1994,-50.2895,-130.136,0,-126.451	1/1:54:0,54,0:0:0:54,0:1887,0:-170.078,-16.2556,0,-170.078,-16.2556,-170.078	1/1:25:0,25,0:0:0:25,0:881,0:-79.5494,-7.52575,0,-79.5494,-7.52575,-79.5494	1/1:32:0,32,0:0:0:32,0:1142,0:-103.089,-9.63296,0,-103.089,-9.63296,-103.089	1/2:39:0,18,20:0:0:18,20:646,716:-111.135,-58.4484,-53.0299,-52.8329,0,-46.8123	1/2:72:0,27,45:0:0:27,45:969,1603:-209.644,-130.602,-122.474,-79.3998,0,-65.8534	1/1:127:0,127,0:0:0:127,0:4487,0:-403.951,-38.2308,0,-403.951,-38.2308,-403.951	1/2:56:0,11,45:0:0:11,45:396,1595:-162.116,-129.803,-126.492,-32.6714,0,-19.1251	1/1:103:0,100,3:0:0:100,3:3536,108:-317.979,-30.103,0,-309.185,-20.9501,-308.282	1/2:70:0,43,27:0:0:43,27:1467,972:-198.65,-79.6417,-66.6974,-119.36,0,-111.233	1/2:41:0,28,13:0:0:28,13:999,447:-118.086,-36.6367,-28.2079,-81.7968,0,-77.8834	1/2:198:0,87,109:0:0:87,109:3057,3908:-566.709,-317.925,-291.736,-248.832,0,-216.02	1/1:129:0,129,0:0:0:129,0:4584,0:-412.712,-38.8329,0,-412.712,-38.8329,-412.712	1/1:35:0,34,1:0:0:34,1:1177,32:-105.91,-10.235,0,-103.332,-7.33674,-103.031	1/2:117:0,54,62:0:0:54,62:1887,2198:-331.862,-178.409,-162.154,-153.59,0,-134.927	1/1:92:0,92,0:0:0:92,0:3242,0:-291.908,-27.6948,0,-291.908,-27.6948,-291.908	1/1:49:0,49,0:0:0:49,0:1735,0:-156.383,-14.7505,0,-156.383,-14.7505,-156.383	1/2:11:0,7,4:0:0:7,4:252,144:-32.3517,-12.1058,-9.99857,-20.6038,0,-19.3997	1/1:6:0,6,0:0:0:6,0:210,0:-19.205,-1.80618,0,-19.205,-1.80618,-19.205	1/1:6:0,6,0:0:0:6,0:216,0:-19.7677,-1.80618,0,-19.7677,-1.80618,-19.7677	1/2:8:0,3,5:0:0:3,5:108,180:-23.8423,-15.0299,-14.1268,-9.17208,0,-7.66693	1/2:21:0,12,8:0:0:12,8:432,260:-56.2009,-20.9339,-17.3216,-35.2498,0,-32.8416	1/2:207:0,116,90:0:0:116,90:4091,3211:-594.051,-260.987,-226.067,-333.168,0,-306.076	1/2:78:0,34,44:0:0:34,44:1205,1552:-224.759,-126.614,-116.379,-98.4982,0,-85.2529	1/2:50:0,20,30:0:0:20,30:716,1056:-144.548,-86.1702,-80.1496,-58.7334,0,-49.7025	1/2:7:0,2,5:0:0:2,5:72,172:-20.1887,-14.3093,-13.7072,-6.23466,0,-4.72951	1/2:93:0,44,48:0:0:44,48:1553,1699:-264.738,-138.276,-125.031,-126.455,0,-112.006	1/2:38:0,20,18:0:0:20,18:711,644:-110.778,-52.845,-46.8244,-58.2894,0,-52.8709	1/2:35:0,16,19:0:0:16,19:560,662:-99.721,-54.1583,-49.3418,-45.9118,0,-40.1922	1/2:57:0,18,39:0:0:18,39:639,1396:-166.036,-113.985,-108.567,-52.4059,0,-40.6657	1/2:65:0,27,38:0:0:27,38:945,1339:-185.527,-108.662,-100.535,-77.215,0,-65.7758	1/1:81:0,81,0:0:0:81,0:2848,0:-256.482,-24.3834,0,-256.482,-24.3834,-256.482	1/1:78:0,77,1:0:0:77,1:2706,36:-243.221,-23.1793,0,-240.287,-19.8858,-239.986	1/2:126:0,57,69:0:0:57,69:2009,2447:-362.745,-199.19,-182.031,-163.909,0,-143.138	1/1:68:0,67,0:0:0:67,0:2340,0:-210.215,-20.169,0,-210.215,-20.169,-210.215	1/2:58:0,21,37:0:0:21,37:749,1316:-168.449,-107.391,-101.07,-61.4142,0,-50.2761	1/2:140:0,53,87:0:0:53,87:1878,3104:-405.254,-252.266,-236.311,-153.343,0,-127.154	2/2:3:0,0,3:0:0:0,3:0,104:-9.68745,-9.68745,-9.68745,-0.90309,-0.90309,0	1/2:111:0,70,41:0:0:70,41:2514,1441:-322.401,-117.518,-96.4456,-205.237,0,-192.895	1/1:48:0,48,0:0:0:48,0:1696,0:-152.915,-14.4494,0,-152.915,-14.4494,-152.915	1/2:7:0,2,5:0:0:2,5:72,180:-20.9048,-15.0299,-14.4278,-6.23466,0,-4.72951	1/2:96:1,67,28:1:36:67,28:2346,995:-268.539,-78.0459,-60.8136,-187.852,0,-182.359	1/2:25:0,12,13:0:0:12,13:418,4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chr07	18667865	.	T	C	90706	PASS	AB=0.523649;ABP=17.389;AC=135;AF=0.718085;AN=188;AO=3551;CIGAR=1X;DP=4968;DPB=4968;DPRA=0;EPP=1391.78;EPPR=563.923;GTI=0;LEN=1;MEANALT=1;MQM=56.606;MQMR=59.7191;NS=94;NUMALT=1;ODDS=3.35665;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126796;QR=50836;RO=1417;RPL=1022;RPP=1391.78;RPPR=563.923;RPR=2529;RUN=1;SAF=3551;SAP=7713.91;SAR=0;SRF=1417;SRP=3079.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:19,20:19:680:20:704:-51.5111,0,-49.789	0/1:46:27,19:27:968:19:676:-47.3191,0,-73.59	0/1:200:92,108:92:3308:108:3857:-287.017,0,-237.729	0/1:125:62,63:62:2228:63:2226:-162.794,0,-163.143	1/1:31:0,31:0:0:31:1112:-100.317,-9.33193,0	1/1:31:0,31:0:0:31:1085:-97.9246,-9.33193,0	1/1:51:0,51:0:0:51:1818:-163.566,-15.3525,0	0/1:67:37,30:37:1324:30:1066:-76.0492,0,-99.2931	1/1:43:0,43:0:0:43:1548:-139.607,-12.9443,0	0/1:41:18,23:18:648:23:828:-62.4404,0,-46.305	1/1:21:0,21:0:0:21:744:-67.1283,-6.32163,0	1/1:46:0,46:0:0:46:1656:-149.3,-13.8474,0	0/1:38:17,21:17:612:21:756:-56.9281,0,-43.9743	0/1:31:16,15:16:568:15:536:-39.2064,0,-42.1199	0/1:27:15,12:15:540:12:432:-31.0675,0,-40.7114	1/1:27:0,27:0:0:27:959:-86.4403,-8.12781,0	1/1:36:1,35:1:36:35:1252:-109.33,-7.23881,0	1/1:17:1,16:1:36:16:576:-48.5458,-1.51924,0	0/1:18:5,13:5:180:13:468:-37.0387,0,-11.1335	0/1:117:52,65:52:1859:65:2312:-172.929,0,-132.272	1/1:60:0,60:0:0:60:2152:-193.777,-18.0618,0	0/1:91:56,35:56:2012:35:1256:-85.738,0,-153.907	1/1:68:0,68:0:0:68:2427:-218.459,-20.47,0	0/1:51:18,33:18:648:33:1180:-90.9382,0,-43.2994	0/1:33:12,21:12:428:21:752:-57.9754,0,-28.9248	0/1:122:52,70:52:1872:70:2481:-185.856,0,-132.021	1/1:88:0,88:0:0:88:3145:-281.951,-26.4906,0	1/1:11:0,11:0:0:11:396:-35.9534,-3.31133,0	0/1:147:56,91:56:1993:91:3272:-249.941,0,-135.378	1/1:135:1,134:1:36:134:4764:-424.187,-37.0408,0	1/1:84:1,83:1:36:83:2974:-263.73,-21.6882,0	0/1:6:4,2:4:144:2:72:-5.02729,0,-11.5074	0/1:6:2,4:2:72:4:144:-11.5011,0,-5.03054	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:61:35,26:35:1251:26:927:-65.2173,0,-94.5137	0/1:83:42,41:42:1512:41:1467:-106.518,0,-111.367	0/1:20:9,11:9:316:11:396:-29.9621,0,-22.7583	0/1:4:2,2:2:72:2:72:-5.62935,0,-5.6326	0/1:83:34,49:34:1224:49:1764:-133.849,0,-85.48	0/1:18:3,15:3:108:15:532:-42.7039,0,-4.65663	0/1:73:43,30:43:1544:30:1070:-74.5868,0,-117.267	0/1:21:13,8:13:464:8:284:-19.5535,0,-35.7759	0/1:36:20,16:20:720:16:576:-41.3033,0,-54.2917	1/1:92:0,92:0:0:92:3292:-295.996,-27.6948,0	1/1:65:0,65:0:0:65:2320:-209.009,-19.567,0	0/1:72:41,31:41:1476:31:1116:-78.9598,0,-111.448	1/1:72:0,72:0:0:72:2575:-231.573,-21.6742,0	0/1:74:42,32:42:1512:32:1137:-80.1406,0,-114.094	0/1:81:40,41:40:1432:41:1468:-107.758,0,-104.763	0/1:6:5,1:5:180:1:36:-1.79038,0,-14.7459	0/1:123:53,70:53:1908:70:2512:-189.219,0,-134.971	1/1:50:1,49:1:36:49:1756:-154.463,-11.4532,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:87:40,47:40:1440:47:1688:-125.941,0,-103.574	0/1:10:3,7:3:108:7:243:-19.1826,0,-7.06393	1/1:5:0,5:0:0:5:180:-16.535,-1.50515,0	1/1:10:0,10:0:0:10:356:-32.2659,-3.0103,0	1/1:81:0,81:0:0:81:2862:-257.267,-24.3834,0	1/1:58:0,58:0:0:58:2079:-187.073,-17.4597,0	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	1/1:79:0,79:0:0:79:2805:-252.244,-23.7814,0	1/1:73:0,73:0:0:73:2608:-234.532,-21.9752,0	0/1:31:13,18:13:468:18:640:-48.5588,0,-33.1231	1/1:47:0,47:0:0:47:1688:-151.401,-14.1484,0	0/1:87:41,46:41:1476:46:1633:-120.716,0,-106.943	0/1:103:61,42:61:2188:42:1508:-104.769,0,-166.152	1/1:16:1,15:1:36:15:536:-44.9558,-1.21821,0	1/1:43:0,43:0:0:43:1540:-138.863,-12.9443,0	0/1:28:13,15:13:460:15:536:-40.0759,0,-33.3065	0/1:15:6,9:6:212:9:320:-24.6079,0,-14.9078	1/1:57:0,57:0:0:57:2032:-183.091,-17.1587,0	0/1:49:22,27:22:784:27:968:-72.6585,0,-56.1288	1/1:72:1,71:1:36:71:2548:-225.616,-18.0796,0	1/1:88:0,88:0:0:88:3140:-281.844,-26.4906,0	0/1:114:44,70:44:1565:70:2512:-192.01,0,-106.821	1/1:52:0,52:0:0:52:1852:-166.882,-15.6536,0	1/1:5:0,5:0:0:5:169:-15.5368,-1.50515,0	1/1:66:0,66:0:0:66:2364:-212.075,-19.868,0	0/1:63:38,25:38:1360:25:900:-62.3561,0,-103.735	0/1:136:48,88:48:1728:88:3137:-241.303,0,-114.859	0/1:59:17,42:17:604:42:1493:-116.73,0,-36.9298	0/1:29:12,17:12:432:17:578:-43.5752,0,-30.4858	0/1:15:6,9:6:216:9:324:-24.9693,0,-15.2751	0/1:46:25,21:25:900:21:752:-53.8229,0,-67.4736	1/1:17:0,17:0:0:17:608:-55.0505,-5.11751,0	1/1:35:0,35:0:0:35:1256:-113.339,-10.5361,0	1/1:48:0,48:0:0:48:1720:-155.062,-14.4494,0	0/1:18:10,8:10:360:8:288:-20.8364,0,-27.3149	0/1:68:38,30:38:1364:30:1064:-75.3512,0,-102.591	0/1:27:22,5:22:792:5:180:-8.41395,0,-63.4732	1/1:83:0,83:0:0:83:2953:-265.523,-24.9855,0	1/1:42:0,42:0:0:42:1490:-134.054,-12.6433,0
chr07	18748096	.	CAG	TAA,TAG	141566	PASS	AB=0.57437,0.423733;ABP=180.329,189.488;AC=135,53;AF=0.718085,0.281915;AN=188;AO=4857,1575;CIGAR=1X1M1X,1X2M;DP=6444;DPB=7645;DPRA=69.2796,1.16121;EPP=9649.24,1906.5;EPPR=5.18177;GTI=5;LEN=3,1;MEANALT=1.76344,2.08197;MQM=53.5081,59.9848;MQMR=60;NS=94;NUMALT=2;ODDS=0.627203;PAIRED=0,0;PAIREDR=0;PAO=1801.5,1801.5;PQA=63583,63583;PQR=0;PRO=0;QA=171169,56401;QR=36;RO=1;RPL=4751,1574;RPP=9649.24,3414.4;RPPR=5.18177;RPR=106,1;RUN=1,1;SAF=0,199;SAP=10549.9,1912.98;SAR=4857,1376;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:14:0,7,7:0:0:7,7:244,236:-39.2229,-19.4604,-17.3532,-20.1045,0,-17.9973	1/2:74:0,55,19:0:0:55,19:1935,680:-212.166,-55.8096,-39.2529,-156.712,0,-150.992	1/2:82:0,49,33:0:0:49,33:1733,1184:-236.834,-96.9343,-82.1839,-140.255,0,-130.321	1/2:97:0,70,27:0:0:70,27:2461,964:-274.298,-74.4287,-53.3566,-195.723,0,-187.595	1/1:33:0,32,1:0:0:32,1:1130,36:-99.1584,-9.63296,0,-96.2226,-6.33572,-95.9216	1/1:5:0,5,0:0:0:5,0:180,0:-16.5105,-1.50515,0,-16.5105,-1.50515,-16.5105	1/1:65:0,64,1:0:0:64,1:2237,36:-195.126,-19.2659,0,-192.19,-15.9687,-191.889	1/2:118:0,76,42:0:0:76,42:2680,1500:-338.979,-122.651,-99.773,-216.682,0,-204.039	1/1:86:0,85,1:0:0:85,1:3022,36:-269.346,-25.5876,0,-266.409,-22.2903,-266.108	1/2:70:0,58,12:0:0:58,12:2032,432:-198.053,-33.2367,-15.7769,-162.809,0,-159.197	1/1:65:0,64,0:0:0:64,0:2224,0:-195.245,-19.2659,0,-195.245,-19.2659,-195.245	1/1:56:0,56,0:0:0:56,0:1989,0:-178.57,-16.8577,0,-178.57,-16.8577,-178.57	1/2:49:0,25,24:0:0:25,24:885,864:-142.365,-70.8002,-63.2745,-71.8637,0,-64.639	1/2:80:0,52,27:0:0:52,27:1830,972:-223.671,-75.8475,-60.1939,-144.38,0,-136.252	1/2:58:0,25,33:0:0:25,33:898,1188:-166.565,-93.4463,-85.9205,-69.7199,0,-59.7859	1/1:46:0,46,0:0:0:46,0:1611,0:-140.423,-13.8474,0,-140.423,-13.8474,-140.423	1/1:118:0,118,0:0:0:118,0:4174,0:-373.658,-35.5215,0,-373.658,-35.5215,-373.658	1/1:55:0,55,0:0:0:55,0:1973,0:-177.083,-16.5567,0,-177.083,-16.5567,-177.083	1/2:61:0,24,37:0:0:24,37:857,1332:-178.203,-109.044,-101.82,-69.5149,0,-58.3768	1/2:102:0,55,47:0:0:55,47:1955,1669:-286.495,-127.699,-111.142,-150.577,0,-136.429	1/1:104:0,103,1:0:0:103,1:3629,36:-319.621,-31.0061,0,-316.684,-27.7088,-316.383	1/2:37:0,21,16:0:0:21,16:738,564:-106.25,-46.2738,-39.9522,-60.3282,0,-55.5117	1/1:32:0,31,1:0:0:31,1:1104,36:-95.8987,-9.33193,0,-92.9645,-6.03469,-92.6635	1/2:51:0,40,11:0:0:40,11:1422,392:-146.251,-31.1598,-19.1186,-114.305,0,-110.993	1/2:28:0,14,14:0:0:14,14:489,504:-78.586,-38.9689,-34.7545,-37.5533,0,-33.3389	1/2:185:0,115,69:0:0:115,69:4067,2480:-532.879,-202.401,-167.782,-330.554,0,-309.783	1/1:162:0,161,1:0:0:161,1:5698,36:-499.821,-48.4658,0,-496.884,-45.1686,-496.583	1/1:25:0,25,0:0:0:25,0:898,0:-78.3911,-7.52575,0,-78.3911,-7.52575,-78.3911	1/2:160:0,97,63:0:0:97,63:3435,2245:-462.231,-183.288,-154.088,-279.239,0,-260.274	1/1:64:0,64,0:0:0:64,0:2262,0:-199.655,-19.2659,0,-199.655,-19.2659,-199.655	1/1:70:0,70,0:0:0:70,0:2469,0:-217.576,-21.0721,0,-217.576,-21.0721,-217.576	1/2:4:0,3,1:0:0:3,1:108,36:-11.9148,-3.29724,-2.39415,-8.9973,0,-8.69627	1/1:8:0,8,0:0:0:8,0:278,0:-24.3247,-2.40824,0,-24.3247,-2.40824,-24.3247	1/1:1:0,1,0:0:0:1,0:36,0:-3.58923,-0.30103,0,-3.58923,-0.30103,-3.58923	1/1:1:0,1,0:0:0:1,0:36,0:-3.3876,-0.30103,0,-3.3876,-0.30103,-3.3876	1/2:7:0,3,4:0:0:3,4:106,144:-20.7177,-12.1095,-11.2064,-8.96377,0,-7.75965	1/2:248:1,87,159:1:36:87,159:3064,5674:-708.385,-459.576,-436.323,-246.138,0,-201.212	1/2:79:0,64,15:0:0:64,15:2223,540:-220.614,-41.8934,-22.6274,-176.558,0,-172.042	1/2:67:0,31,36:0:0:31,36:1079,1295:-193.161,-106.017,-96.685,-87.4965,0,-76.6594	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:63:0,41,22:0:0:41,22:1455,776:-176.413,-58.714,-46.3718,-113.269,0,-106.647	1/2:33:0,10,23:0:0:10,23:356,828:-93.5614,-64.7543,-61.744,-26.2275,0,-19.3038	1/2:58:0,39,19:0:0:39,19:1390,680:-163.194,-50.2792,-38.539,-107.791,0,-102.071	1/2:93:0,49,44:0:0:49,44:1709,1580:-263.754,-125.133,-110.382,-134.902,0,-121.657	1/2:74:0,39,35:0:0:39,35:1378,1256:-211.621,-99.5528,-87.8127,-109.208,0,-98.6723	1/1:40:0,40,0:0:0:40,0:1388,0:-125.013,-12.0412,0,-125.013,-12.0412,-125.013	1/1:107:0,107,0:0:0:107,0:3728,0:-332.676,-32.2102,0,-332.676,-32.2102,-332.676	1/2:95:0,60,35:0:0:60,35:2133,1256:-272.601,-99.1884,-81.1266,-170.172,0,-159.636	1/1:82:0,82,0:0:0:82,0:2896,0:-255.764,-24.6845,0,-255.764,-24.6845,-255.764	1/2:98:0,64,34:0:0:64,34:2239,1224:-278.668,-97.0233,-77.7573,-178.81,0,-168.575	1/2:75:0,34,41:0:0:34,41:1204,1472:-218.181,-120.375,-110.14,-98.1039,0,-85.7617	1/2:6:0,5,1:0:0:5,1:180,36:-17.8371,-3.29724,-1.79209,-14.9013,0,-14.6003	1/2:78:0,53,25:0:0:53,25:1865,896:-223.952,-73.4346,-57.48,-150.873,0,-143.347	1/1:12:0,12,0:0:0:12,0:424,0:-38.4301,-3.61236,0,-38.4301,-3.61236,-38.4301	1/2:8:0,7,1:0:0:7,1:252,36:-23.6174,-3.29724,-1.19003,-20.6795,0,-20.3785	1/2:89:0,57,32:0:0:57,32:1984,1148:-249.915,-89.7994,-72.6407,-156.3,0,-146.667	1/2:20:0,7,13:0:0:7,13:244,464:-57.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chr07	18995542	.	CATAA	TATAA,TATAG	145316	PASS	AB=0.381921,0.613842;ABP=431.72,401.504;AC=140,48;AF=0.744681,0.255319;AN=188;AO=4528,2191;CIGAR=1X4M,1X3M1X;DP=6739;DPB=6738.8;DPRA=14.4817,1.09438;EPP=9593.74,4605.64;EPPR=5.18177;GTI=5;LEN=1,5;MEANALT=1.7957,2.24561;MQM=60,59.9932;MQMR=60;NS=94;NUMALT=2;ODDS=0.706263;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=161790,77656;QR=36;RO=1;RPL=28,18;RPP=9593.74,4605.64;RPPR=5.18177;RPR=4500,2173;RUN=1,1;SAF=4528,2191;SAP=9835.44,4760.71;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,28,14:0:0:28,14:1004,488:-121.63,-39.7327,-31.3039,-81.9451,0,-77.7306	1/2:55:0,15,39:0:0:15,39:525,1362:-153.489,-110.776,-106.261,-42.7034,0,-30.9632	1/2:190:0,61,129:0:0:61,129:2173,4566:-549.395,-372.278,-353.915,-177.473,0,-138.64	1/2:192:0,66,125:0:0:66,125:2348,4436:-552.87,-361.516,-341.648,-191.438,0,-153.809	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9144,-8.72987,0,-93.9144,-8.72987,-93.9144	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/2:109:0,39,70:0:0:39,70:1396,2465:-314.877,-201.033,-189.293,-114.199,0,-93.1268	1/1:123:0,123,0:0:0:123,0:4412,0:-397.251,-37.0267,0,-397.251,-37.0267,-397.251	1/1:80:0,80,0:0:0:80,0:2872,0:-258.716,-24.0824,0,-258.716,-24.0824,-258.716	1/2:54:0,23,31:0:0:23,31:816,1108:-157.181,-90.699,-83.7753,-66.838,0,-57.5061	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/2:83:0,34,49:0:0:34,49:1220,1738:-241.468,-141.953,-131.718,-99.8718,0,-85.1213	1/2:46:0,26,20:0:0:26,20:932,714:-134.582,-58.5671,-50.7403,-76.3721,0,-70.3515	1/2:53:0,19,34:0:0:19,34:684,1206:-154.417,-98.6044,-92.8848,-56.1708,0,-45.9357	1/2:49:0,24,25:0:0:24,25:845,894:-142.043,-73.2548,-66.0301,-69.1432,0,-61.6175	1/1:42:0,42,0:0:0:42,0:1501,0:-135.383,-12.6433,0,-135.383,-12.6433,-135.383	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:25:0,23,2:0:0:23,2:824,72:-74.1236,-6.92369,0,-68.2487,-0.689028,-67.6466	1/2:28:0,13,15:0:0:13,15:455,535:-80.9845,-43.9688,-40.0554,-37.3686,0,-32.8531	1/2:212:0,64,147:0:0:64,147:2296,5220:-612.608,-425.33,-406.064,-187.275,0,-143.024	1/1:48:0,48,0:0:0:48,0:1705,0:-153.735,-14.4494,0,-153.735,-14.4494,-153.735	1/1:127:0,127,0:0:0:127,0:4535,0:-408.318,-38.2308,0,-408.318,-38.2308,-408.318	1/1:66:0,66,0:0:0:66,0:2346,0:-211.398,-19.868,0,-211.398,-19.868,-211.398	1/1:54:0,53,0:0:0:53,0:1896,0:-170.606,-15.9546,0,-170.606,-15.9546,-170.606	1/2:93:0,51,42:0:0:51,42:1802,1476:-267.246,-120.49,-105.138,-147.108,0,-134.465	1/2:268:0,97,170:0:0:97,170:3475,6039:-775.537,-492.133,-462.933,-283.45,0,-232.275	1/1:197:0,196,1:0:0:196,1:7004,35:-630.073,-59.0019,0,-627.226,-55.8043,-626.925	1/2:30:0,17,13:0:0:17,13:612,458:-87.5816,-37.6412,-32.5237,-50.2959,0,-46.3825	1/1:173:0,173,0:0:0:173,0:6191,0:-557.287,-52.0782,0,-557.287,-52.0782,-557.287	1/2:72:0,38,34:0:0:38,34:1368,1196:-209.336,-97.7101,-86.271,-111.982,0,-101.747	1/1:76:0,74,1:0:0:74,1:2646,36:-238.025,-22.2762,0,-235.088,-19.3388,-234.787	1/2:6:0,4,2:0:0:4,2:140,72:-17.6186,-6.23466,-5.03054,-11.7405,0,-11.1384	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	2/2:5:0,0,5:0:0:0,5:0,177:-16.277,-16.277,-16.277,-1.50515,-1.50515,0	1/2:12:0,5,7:0:0:5,7:180,248:-35.2466,-20.5571,-19.052,-15.0469,0,-12.9397	1/1:135:0,134,0:0:0:134,0:4777,0:-429.836,-40.338,0,-429.836,-40.338,-429.836	1/2:128:0,48,80:0:0:48,80:1719,2826:-370.689,-230.499,-216.049,-140.546,0,-116.464	1/2:33:0,20,13:0:0:20,13:707,466:-95.9429,-38.3653,-32.3447,-57.934,0,-54.0206	1/2:7:0,1,4:0:0:1,4:36,144:-14.7049,-11.7663,-11.4653,-2.94573,0,-1.74161	1/2:100:0,37,63:0:0:37,63:1324,2244:-291.226,-183.26,-172.121,-108.324,0,-89.3591	1/2:19:0,5,14:0:0:5,14:180,501:-55.9001,-41.2124,-39.7073,-15.0469,0,-10.8325	1/2:149:0,50,99:0:0:50,99:1792,3507:-432.195,-286.041,-270.989,-146.511,0,-116.709	1/2:28:0,13,15:0:0:13,15:459,526:-80.5331,-43.1542,-39.2408,-37.7307,0,-33.2152	1/2:40:0,21,19:0:0:21,19:756,674:-116.957,-55.2683,-48.9466,-62.0456,0,-56.326	1/1:72:0,72,0:0:0:72,0:2562,0:-230.829,-21.6742,0,-230.829,-21.6742,-230.829	1/1:87:0,87,0:0:0:87,0:3104,0:-279.588,-26.1896,0,-279.588,-26.1896,-279.588	1/2:223:0,80,143:0:0:80,143:2868,5044:-644.983,-411.065,-386.982,-234.275,0,-191.227	1/1:46:0,45,1:0:0:45,1:1612,36:-145.01,-13.5464,0,-142.073,-10.2491,-141.772	1/1:63:0,63,0:0:0:63,0:2264,0:-204.022,-18.9649,0,-204.022,-18.9649,-204.022	1/1:81:1,80,0:1:36:80,0:2880,0:-255.837,-20.7852,0,-256.138,-24.0824,-259.076	1/2:18:0,4,14:0:0:4,14:144,501:-52.9626,-41.2124,-40.0083,-12.1095,0,-7.89508	1/2:152:0,49,103:0:0:49,103:1748,3659:-441.008,-298.511,-283.76,-142.854,0,-111.848	1/1:52:0,52,0:0:0:52,0:1868,0:-168.399,-15.6536,0,-168.399,-15.6536,-168.399	1/2:7:0,1,6:0:0:1,6:36,214:-20.7395,-17.8016,-17.5006,-3.29724,0,-1.49106	1/2:103:0,47,54:0:0:47,54:1692,1886:-291.466,-153.403,-139.254,-138.059,0,-121.803	1/2:39:0,16,22:0:0:16,22:576,788: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chr07	19051454	.	G	A	114508	PASS	AB=0.472692;ABP=22.9348;AC=142;AF=0.755319;AN=188;AO=5384;CIGAR=1X;DP=7009;DPB=7009;DPRA=0;EPP=11694.2;EPPR=3525.14;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9229;MQMR=59.9661;NS=94;NUMALT=1;ODDS=3.40698;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192141;QR=57742;RO=1622;RPL=0;RPP=11694.2;RPPR=3516.46;RPR=5384;RUN=1;SAF=0;SAP=11694.2;SAR=5384;SRF=1;SRP=3516.46;SRR=1621;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:37,17:37:1316:17:603:-38.3439,0,-102.486	0/1:61:29,32:29:1027:32:1144:-84.9067,0,-74.3793	0/1:174:101,73:101:3607:73:2620:-183.562,0,-272.457	0/1:218:113,105:113:4029:105:3757:-272.511,0,-297.174	1/1:57:0,57:0:0:57:2020:-182.07,-17.1587,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:87:37,50:37:1332:50:1787:-134.92,0,-93.9928	1/1:111:0,111:0:0:111:3940:-354.782,-33.4143,0	1/1:96:0,96:0:0:96:3440:-309.813,-28.8989,0	0/1:59:30,29:30:1080:29:1032:-75.4327,0,-79.7525	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	0/1:43:19,24:19:662:24:852:-64.0561,0,-46.9581	0/1:31:13,18:13:468:18:640:-48.5974,0,-33.1277	0/1:15:8,7:8:280:7:248:-18.1487,0,-21.0239	0/1:24:13,11:13:455:11:396:-28.758,0,-34.0572	1/1:23:0,23:0:0:23:827:-74.754,-6.92369,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:181:84,97:84:3008:97:3468:-257.834,0,-216.465	1/1:87:1,86:1:36:86:3073:-273.195,-22.5913,0	1/1:98:0,98:0:0:98:3520:-316.964,-29.5009,0	1/1:161:0,161:0:0:161:5744:-516.756,-48.4658,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:57:22,35:22:788:35:1248:-95.4638,0,-54.0861	0/1:243:136,107:136:4814:107:3825:-271.295,0,-360.27	1/1:181:0,181:0:0:181:6461:-581.488,-54.4864,0	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	1/1:199:0,199:0:0:199:7115:-640.404,-59.905,0	0/1:93:37,56:37:1293:56:1999:-152.186,0,-88.6732	1/1:130:0,130:0:0:130:4622:-416.143,-39.1339,0	0/1:17:7,10:7:244:10:352:-26.8991,0,-17.1819	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:11:4,7:4:144:7:248:-19.3446,0,-10.0023	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	1/1:94:0,94:0:0:94:3343:-301.088,-28.2968,0	0/1:130:65,65:65:2320:65:2320:-169.927,0,-169.904	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:112:52,59:52:1863:59:2089:-154.475,0,-134.13	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	0/1:173:99,74:99:3517:74:2648:-186.486,0,-264.651	0/1:18:5,13:5:180:13:460:-36.3168,0,-11.1335	0/1:23:12,11:12:417:11:396:-29.0591,0,-30.9365	1/1:117:0,117:0:0:117:4170:-375.482,-35.2205,0	1/1:99:0,99:0:0:99:3529:-317.819,-29.802,0	0/1:169:95,73:95:3382:73:2604:-183.674,0,-253.66	1/1:107:0,107:0:0:107:3803:-342.468,-32.2102,0	1/1:85:0,85:0:0:85:3041:-273.919,-25.5876,0	1/1:206:0,206:0:0:206:7344:-661.01,-62.0122,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:120:60,60:60:2148:60:2126:-155.475,0,-157.464	1/1:62:0,62:0:0:62:2217:-199.793,-18.6639,0	0/1:14:7,7:7:244:7:252:-18.8145,0,-18.085	0/1:120:73,47:73:2607:47:1688:-116.083,0,-198.754	0/1:49:31,18:31:1088:18:644:-43.5401,0,-83.476	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:62:0,62:0:0:62:2219:-199.975,-18.6639,0	1/1:55:1,54:1:32:54:1920:-169.876,-13.3573,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:178:0,178:0:0:178:6342:-570.871,-53.5833,0	1/1:160:1,159:1:36:159:5692:-508.37,-44.5665,0	0/1:51:16,35:16:576:35:1256:-97.9928,0,-36.8225	1/1:83:0,83:0:0:83:2941:-264.649,-24.9855,0	0/1:181:101,79:101:3597:79:2821:-199.582,0,-269.285	0/1:166:117,49:117:4169:49:1743:-107.183,0,-325.422	0/1:15:5,10:5:176:10:356:-27.8658,0,-11.6696	1/1:36:0,36:0:0:36:1287:-116.133,-10.8371,0	1/1:21:0,21:0:0:21:724:-65.4767,-6.32163,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:152:0,152:0:0:152:5404:-486.481,-45.7566,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:115:0,115:0:0:115:4112:-370.265,-34.6185,0	1/1:151:0,151:0:0:151:5427:-488.555,-45.4555,0	0/1:97:45,52:45:1595:52:1843:-136.934,0,-114.64	1/1:87:0,87:0:0:87:3101:-279.316,-26.1896,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:80:0,80:0:0:80:2844:-256.156,-24.0824,0	1/1:114:0,114:0:0:114:4080:-367.386,-34.3174,0	1/1:191:0,191:0:0:191:6839:-615.58,-57.4967,0	1/1:40:0,40:0:0:40:1410:-127.195,-12.0412,0	0/1:22:12,10:12:424:10:360:-26.1216,0,-31.8738	0/1:20:7,13:7:244:13:468:-36.439,0,-16.2788	0/1:63:25,38:25:888:38:1339:-101.844,0,-61.2741	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:43:0,43:0:0:43:1532:-138.173,-12.9443,0	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:31:18,13:18:644:13:468:-33.1277,0,-48.9587	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	1/1:144:0,144:0:0:144:5132:-462.019,-43.3483,0	1/1:35:0,35:0:0:35:1255:-113.255,-10.5361,0
chr07	19231601	.	CATA	CATG,GATG	318725	PASS	AB=0.421343,0.574527;ABP=315.237,283.304;AC=130,58;AF=0.691489,0.308511;AN=188;AO=8049,6796;CIGAR=3M1X,1X2M1X;DP=14896;DPB=14898.2;DPRA=0.569581,1.46961;EPP=17481.2,14760.3;EPPR=18.2106;GTI=10;LEN=1,4;MEANALT=2,2.5;MQM=59.9698,58.7054;MQMR=60;NS=94;NUMALT=2;ODDS=30675.3;PAIRED=0,0;PAIREDR=0;PAO=4.5,4.5;PQA=158,158;PQR=0;PRO=0;QA=287071,240354;QR=236;RO=7;RPL=0,0;RPP=17481.2,14760.3;RPPR=18.2106;RPR=8049,6796;RUN=1,1;SAF=8049,6796;SAP=17481.2,14760.3;SAR=0,0;SRF=7;SRP=18.2106;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	2/2:13:0,1,12:0:0:1,12:36,432:-38.8504,-35.913,-35.612,-3.61236,-0.315115,0	1/2:118:1,49,68:1:36:49,68:1730,2373:-329.959,-189.381,-177.568,-137.933,0,-120.4	1/2:74:0,22,52:0:0:22,52:773,1840:-213.098,-150.183,-143.56,-63.2668,0,-47.6133	1/2:248:0,99,149:0:0:99,149:3529,5240:-714.367,-426.723,-396.921,-287.998,0,-243.145	1/1:27:0,27,0:0:0:27,0:957,0:-86.4439,-8.12781,0,-86.4439,-8.12781,-86.4439	1/1:54:0,54,0:0:0:54,0:1919,0:-172.985,-16.2556,0,-172.985,-16.2556,-172.985	1/2:205:0,71,132:0:0:71,132:2532,4707:-589.568,-383.166,-361.793,-206.457,0,-166.721	1/1:270:0,270,0:0:0:270,0:9684,0:-871.318,-81.2781,0,-871.318,-81.2781,-871.318	1/1:144:0,144,0:0:0:144,0:5137,0:-462.47,-43.3483,0,-462.47,-43.3483,-462.47	1/2:120:0,55,65:0:0:55,65:1938,2303:-345.662,-187.879,-171.322,-158.136,0,-138.569	1/1:67:0,66,1:0:0:66,1:2338,36:-210.317,-19.868,0,-207.379,-16.5707,-207.078	1/2:103:0,51,52:0:0:51,52:1832,1826:-298.33,-148.877,-133.524,-149.808,0,-134.155	1/2:89:0,62,27:0:0:62,27:2201,963:-258.167,-78.8333,-60.1694,-179.69,0,-171.562	1/2:77:1,41,35:1:36:41,35:1457,1234:-215.903,-97.4756,-88.071,-115.785,0,-108.186	1/2:76:0,61,15:0:0:61,15:2179,537:-221.804,-44.15,-25.7872,-178.012,0,-173.496	1/1:64:0,64,0:0:0:64,0:2300,0:-207.261,-19.2659,0,-207.261,-19.2659,-207.261	1/1:107:0,106,0:0:0:106,0:3787,0:-340.601,-31.9092,0,-340.601,-31.9092,-340.601	1/1:108:0,107,0:0:0:107,0:3818,0:-343.455,-32.2102,0,-343.455,-32.2102,-343.455	1/2:146:0,30,114:0:0:30,114:1061,4040:-415.202,-328.787,-319.756,-86.4091,0,-52.0917	1/2:138:0,38,99:0:0:38,99:1368,3508:-397.255,-285.632,-274.192,-111.622,0,-81.8199	1/1:187:1,186,0:1:32:186,0:6615,0:-592.23,-53.0933,0,-592.531,-55.9916,-595.109	1/1:97:0,97,0:0:0:97,0:3472,0:-312.691,-29.1999,0,-312.691,-29.1999,-312.691	1/1:75:0,74,1:0:0:74,1:2626,36:-236.195,-22.2762,0,-233.258,-18.979,-232.957	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1529,-9.0309,0,-97.1529,-9.0309,-97.1529	1/2:110:0,49,61:0:0:49,61:1747,2162:-318.553,-176.275,-161.525,-142.633,0,-124.27	1/2:397:0,212,185:0:0:212,185:7555,6549:-1149.51,-533.697,-469.879,-616.171,0,-560.48	1/1:263:0,260,0:0:0:260,0:9261,0:-833.111,-78.2678,0,-833.111,-78.2678,-833.111	1/1:66:0,66,0:0:0:66,0:2360,0:-212.659,-19.868,0,-212.659,-19.868,-212.659	1/1:217:0,217,0:0:0:217,0:7701,0:-693.123,-65.3235,0,-693.123,-65.3235,-693.123	1/2:140:0,56,83:0:0:56,83:2001,2947:-403.207,-240.059,-223.201,-163.144,0,-138.159	1/1:121:0,121,0:0:0:121,0:4294,0:-386.635,-36.4246,0,-386.635,-36.4246,-386.635	2/2:584:0,4,577:0:0:4,577:140,20379:-1832.49,-1821.1,-1819.9,-173.694,-162.319,0	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	2/2:350:0,6,342:0:0:6,342:216,12022:-1079.46,-1061.83,-1060.02,-102.952,-85.3277,0	2/2:276:0,0,276:0:0:0,276:0,9758:-876.527,-876.527,-876.527,-83.0843,-83.0843,0	1/1:360:0,358,0:0:0:358,0:12768,0:-1148.58,-107.769,0,-1148.58,-107.769,-1148.58	1/2:199:0,86,113:0:0:86,113:3055,4012:-575.56,-326.625,-300.736,-249.289,0,-215.273	1/2:254:1,46,206:1:30:46,206:1641,7319:-726.358,-592.886,-581.437,-131.453,0,-71.8388	2/2:202:0,2,200:0:0:2,200:72,7083:-637.071,-631.196,-630.594,-60.206,-53.9713,0	1/2:192:0,68,123:0:0:68,123:2428,4353:-552.106,-354.156,-333.686,-197.946,0,-160.919	1/2:116:0,24,92:0:0:24,92:849,3267:-335.58,-266.431,-259.206,-69.5031,0,-41.8083	1/2:261:0,132,127:0:0:132,127:4728,4468:-748.925,-363.338,-323.602,-385.563,0,-347.332	1/2:132:0,105,27:0:0:105,27:3772,943:-384.762,-77.043,-45.4348,-308.07,0,-299.942	1/2:84:0,59,25:0:0:59,25:2120,891:-245.873,-72.9268,-55.166,-173.303,0,-165.777	1/1:295:0,295,0:0:0:295,0:10488,0:-943.776,-88.8039,0,-943.776,-88.8039,-943.776	1/1:87:0,87,0:0:0:87,0:3124,0:-281.326,-26.1896,0,-281.326,-26.1896,-281.326	1/2:210:0,90,120:0:0:90,120:3215,4238:-607.49,-345.365,-318.272,-262.481,0,-226.357	1/1:162:1,161,0:1:30:161,0:5780,0:-517.311,-45.7673,0,-517.612,-48.4658,-520.01	1/1:166:0,166,0:0:0:166,0:5927,0:-533.535,-49.971,0,-533.535,-49.971,-533.535	1/1:149:0,149,0:0:0:149,0:5317,0:-478.624,-44.8535,0,-478.624,-44.8535,-478.624	2/2:242:0,1,241:0:0:1,241:36,8529:-766.98,-764.043,-763.742,-72.5482,-69.251,0	1/2:99:0,41,58:0:0:41,58:1468,2072:-288.739,-169.022,-156.68,-120.074,0,-102.614	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	2/2:789:0,24,762:0:0:24,762:860,26890:-2416.35,-2346.21,-2338.99,-229.385,-159.23,0	1/2:120:0,53,67:0:0:53,67:1881,2384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chr07	19231644	.	T	C	129767	PASS	AB=0.569158;ABP=240.888;AC=58;AF=0.308511;AN=188;AO=6684;CIGAR=1X;DP=14766;DPB=14766;DPRA=1.77846;EPP=14517.1;EPPR=17533.3;GTI=12;LEN=1;MEANALT=1.08197;MQM=58.749;MQMR=59.9606;NS=94;NUMALT=1;ODDS=1.36492;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235288;QR=288722;RO=8077;RPL=6684;RPP=14517.1;RPPR=17533.3;RPR=0;RUN=1;SAF=6684;SAP=14517.1;SAR=0;SRF=8077;SRP=17542;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:1,12:1:36:12:432:-35.612,-0.315115,0	0/1:117:48,69:48:1724:69:2420:-182.606,0,-120.225	0/1:73:22,51:22:792:51:1792:-139.543,0,-49.6305	0/1:243:99,144:99:3556:144:5049:-381.262,0,-247.079	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:55:55,0:55:1956:0:0:0,-16.5566,-176.313	0/1:205:72,133:72:2588:133:4688:-359.758,0,-171.457	0/0:279:278,1:278:9907:1:36:0,-80.3891,-887.966	0/0:139:139,0:139:4987:0:0:0,-41.8432,-448.974	0/1:120:56,64:56:2012:64:2283:-169.55,0,-145.23	0/0:68:67,1:67:2408:1:36:0,-16.8718,-213.378	0/1:100:51,49:51:1810:49:1668:-120.259,0,-133.077	0/1:86:62,24:62:2228:24:833:-49.3772,0,-174.895	0/1:75:43,32:43:1532:32:1137:-79.9866,0,-115.596	0/1:77:62,15:62:2224:15:532:-25.0338,0,-177.245	0/0:64:64,0:64:2278:0:0:0,-19.2659,-205.281	0/0:111:111,0:111:3948:0:0:0,-33.4143,-355.503	0/0:111:111,0:111:3967:0:0:0,-33.4143,-356.032	0/1:144:34,110:34:1216:110:3875:-305.326,0,-66.3982	0/1:138:38,100:38:1351:100:3526:-275.868,0,-80.3475	0/0:187:185,2:185:6589:2:72:0,-49.4559,-586.254	0/0:95:94,1:94:3376:1:36:0,-24.9996,-300.456	0/0:75:74,1:74:2664:1:36:0,-18.979,-235.917	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:109:50,59:50:1792:59:2062:-152.873,0,-128.621	0/1:394:213,180:213:7609:180:6334:-451.422,0,-566.181	0/0:265:265,0:265:9457:0:0:0,-79.7729,-850.86	0/0:63:63,0:63:2253:0:0:0,-18.9649,-203.031	0/0:215:215,0:215:7716:0:0:0,-64.7214,-694.47	0/1:136:54,82:54:1927:82:2913:-221.422,0,-132.766	0/0:121:121,0:121:4333:0:0:0,-36.4246,-390.143	1/1:573:4,569:4:140:569:20078:-1793.05,-159.546,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:345:3,341:3:108:341:12023:-1070.52,-93.809,0	1/1:272:2,270:2:72:270:9533:-850.303,-75.0434,0	0/0:356:355,1:355:12712:1:27:0,-104.467,-1141.2	0/1:194:85,109:85:2988:109:3878:-290.805,0,-210.746	0/1:252:48,204:48:1715:204:7146:-566.295,0,-78.7753	1/1:196:3,193:3:108:193:6878:-608.943,-48.9267,0	0/1:188:70,118:70:2504:118:4146:-316.485,0,-169.019	0/1:112:23,89:23:801:89:3147:-249.64,0,-38.6911	0/1:253:132,121:132:4723:121:4297:-310.441,0,-349.068	0/1:130:104,26:104:3685:26:904:-42.5096,0,-292.72	0/1:81:56,25:56:2008:25:869:-54.0833,0,-156.61	0/0:294:293,1:293:10492:1:36:0,-84.9045,-940.532	0/0:85:85,0:85:3020:0:0:0,-25.5875,-272.03	0/1:211:92,119:92:3291:119:4201:-314.699,0,-232.892	0/0:161:161,0:161:5756:0:0:0,-48.4658,-518.152	0/0:171:171,0:171:6152:0:0:0,-51.4761,-553.775	0/0:145:145,0:145:5198:0:0:0,-43.6493,-467.871	1/1:237:1,236:1:36:236:8356:-748.168,-67.7458,0	0/1:96:41,55:41:1472:55:1948:-146.51,0,-103.877	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	1/1:771:24,747:24:860:747:26311:-2287.2,-154.372,0	0/1:120:52,67:52:1847:67:2360:-176.295,0,-130.327	0/1:169:48,121:48:1715:121:4211:-328.227,0,-103.761	1/1:402:2,400:2:72:400:14193:-1269.64,-114.177,0	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:172:172,0:172:6123:0:0:0,-51.7772,-551.171	1/1:479:10,469:10:360:469:16506:-1452.02,-111.449,0	0/0:241:241,0:241:8642:0:0:0,-72.5482,-777.766	0/0:105:102,3:102:3656:3:95:0,-22.7439,-320.379	0/1:100:56,44:56:2008:44:1557:-109.759,0,-150.89	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:269:130,139:130:4645:139:4889:-358.768,0,-337.217	0/1:94:15,79:15:540:79:2743:-218.726,0,-20.6397	0/1:110:19,91:19:676:91:3123:-248.067,0,-28.0547	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:97:61,35:61:2184:35:1206:-79.6014,0,-167.607	1/1:180:11,169:11:396:169:5975:-501.69,-18.2027,0	0/0:98:98,0:98:3498:0:0:0,-29.5009,-315.03	0/1:96:59,37:59:2106:37:1294:-87.6271,0,-160.909	0/0:119:119,0:119:4242:0:0:0,-35.8226,-381.957	0/0:180:179,1:179:6431:1:32:0,-50.9861,-575.674	0/1:85:27,58:27:957:58:2041:-158.064,0,-60.8563	0/0:150:150,0:150:5375:0:0:0,-45.1545,-483.872	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:106:104,2:104:3728:2:60:0,-26.2141,-330.025	0/0:100:99,1:99:3499:1:36:0,-26.5057,-311.524	0/0:211:211,0:211:7560:0:0:0,-63.5173,-680.436	0/0:178:176,2:176:6298:2:72:0,-46.7466,-560.067	0/1:74:43,31:43:1536:31:1093:-76.4019,0,-116.257	0/1:174:124,50:124:4387:50:1749:-105.281,0,-342.618	0/1:216:147,69:147:5263:69:2374:-148.805,0,-408.783	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.445	0/0:130:130,0:130:4618:0:0:0,-39.1339,-415.783	0/0:105:103,2:103:3692:2:68:0,-25.1504,-326.024	0/1:191:24,167:24:856:167:5869:-470.675,0,-19.8644	0/1:292:45,246:45:1616:246:8553:-681.598,0,-57.7008	0/1:105:58,47:58:2075:47:1651:-117.203,0,-155.411	0/0:130:130,0:130:4618:0:0:0,-39.1339,-415.783	0/0:155:155,0:155:5498:0:0:0,-46.6596,-494.946
chr07	19356205	.	AT	GT	136421	PASS	AB=0.484037;ABP=11.1909;AC=139;AF=0.747312;AN=186;AO=6404;CIGAR=1X1M;DP=8339;DPB=8339;DPRA=36.633;EPP=13839.7;EPPR=4150.53;GTI=3;LEN=1;MEANALT=1.14286;MQM=59.9864;MQMR=60;NS=93;NUMALT=1;ODDS=0.432109;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228504;QR=67569;RO=1914;RPL=4;RPP=13874.4;RPPR=4159.21;RPR=6400;RUN=1;SAF=4;SAP=13874.4;SAR=6400;SRF=1;SRP=4150.53;SRR=1913;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:121:57,64:57:2036:64:2263:-167.503,0,-147.087	0/1:126:72,54:72:2529:54:1925:-135.596,0,-189.933	0/1:157:78,76:78:2739:76:2714:-197.785,0,-200.035	1/1:50:1,49:1:36:49:1733:-152.654,-11.4532,0	1/1:55:0,55:0:0:55:1961:-176.765,-16.5567,0	0/1:93:51,42:51:1794:42:1512:-108.379,0,-133.744	1/1:145:0,145:0:0:145:5159:-464.449,-43.6494,0	1/1:108:0,108:0:0:108:3857:-347.325,-32.5112,0	0/1:114:76,38:76:2697:38:1344:-86.94,0,-208.655	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	0/1:85:48,37:48:1661:37:1306:-92.2507,0,-124.186	0/1:72:45,27:45:1603:27:963:-65.3118,0,-122.886	0/1:52:24,28:24:857:28:1008:-75.3828,0,-61.7977	0/1:67:27,40:27:961:40:1423:-108.198,0,-66.6363	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	1/1:68:0,68:0:0:68:2426:-218.594,-20.47,0	1/1:43:1,42:1:36:42:1508:-132.416,-9.34602,0	0/1:47:16,31:16:574:31:1074:-82.813,0,-37.8459	0/1:161:89,72:89:3154:72:2564:-182.542,0,-235.62	1/1:169:0,169:0:0:169:6049:-544.512,-50.8741,0	1/1:96:0,94:0:0:94:3357:-301.987,-28.2968,0	1/1:76:1,75:1:36:75:2688:-238.566,-19.28,0	1/1:70:0,70:0:0:70:2488:-224.171,-21.0721,0	0/1:54:29,25:29:1001:25:885:-63.7109,0,-74.1415	0/1:299:143,156:143:4994:156:5549:-409.525,0,-359.606	1/1:239:0,239:0:0:239:8553:-769.767,-71.9462,0	1/1:39:0,38:0:0:38:1352:-121.621,-11.4391,0	1/1:257:0,257:0:0:257:9160:-824.373,-77.3647,0	0/1:98:44,54:44:1551:54:1944:-145.735,0,-110.379	1/1:113:0,113:0:0:113:4052:-364.867,-34.0164,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:7:5,2:5:158:2:72:-4.72951,0,-12.4238	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:254:1,253:1:36:253:9030:-809.08,-72.8633,0	0/1:186:101,85:101:3592:85:3034:-217.298,0,-267.496	0/1:70:26,44:26:934:44:1559:-119.529,0,-63.3072	.:.:.:.:.:.:.:.	0/1:110:50,60:50:1777:60:2148:-160.474,0,-127.099	0/1:52:28,24:28:983:24:860:-62.0683,0,-73.1286	0/1:31:13,15:13:455:15:536:-39.7866,0,-32.4949	0/1:100:57,43:57:2033:43:1526:-107.528,0,-153.139	0/1:78:39,39:39:1379:39:1378:-100.837,0,-100.927	1/1:89:2,87:2:72:87:3062:-268.972,-19.9549,0	1/1:106:0,106:0:0:106:3782:-340.579,-31.9092,0	0/1:130:47,83:47:1658:83:2971:-228.488,0,-110.372	1/1:94:0,92:0:0:92:3304:-297.218,-27.6948,0	1/1:147:0,147:0:0:147:5186:-466.88,-44.2514,0	1/1:63:0,63:0:0:63:2255:-203.212,-18.9649,0	0/1:6:4,2:4:142:2:72:-5.03054,0,-11.323	0/1:93:46,47:46:1635:47:1688:-124.211,0,-119.443	1/1:36:1,35:1:36:35:1249:-109.116,-7.23881,0	0/1:13:6,7:6:205:7:252:-19.1156,0,-14.8702	0/1:143:63,80:63:2200:80:2851:-213.781,0,-155.215	0/1:38:18,20:18:637:20:705:-52.3336,0,-46.2181	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	1/1:48:0,47:0:0:47:1692:-152.275,-14.1484,0	1/1:104:1,103:1:36:103:3699:-329.513,-27.7088,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:220:0,220:0:0:220:7835:-705.18,-66.2266,0	1/1:182:0,182:0:0:182:6523:-587.152,-54.7875,0	0/1:73:38,35:38:1349:35:1260:-91.7303,0,-99.7334	1/1:63:0,63:0:0:63:2246:-202.402,-18.9649,0	0/1:138:62,74:62:2187:74:2645:-196.995,0,-155.795	0/1:97:67,29:67:2344:29:1044:-65.0161,0,-181.959	0/1:31:18,13:18:642:13:468:-33.1277,0,-48.7783	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:78:38,39:38:1351:39:1395:-102.309,0,-98.3505	0/1:17:10,7:10:349:7:252:-17.9114,0,-26.6272	1/1:66:0,66:0:0:66:2354:-212.118,-19.868,0	0/1:67:33,34:33:1178:34:1216:-89.5776,0,-86.1594	1/1:117:0,117:0:0:117:4168:-375.033,-35.2205,0	1/1:146:0,145:0:0:145:5197:-467.557,-43.6494,0	0/1:61:31,30:31:1095:30:1080:-79.1504,0,-80.4954	1/1:129:0,129:0:0:129:4588:-413.084,-38.8329,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:106:1,105:1:36:105:3735:-332.752,-28.3109,0	1/1:96:0,96:0:0:96:3427:-308.642,-28.8989,0	1/1:233:0,233:0:0:233:8320:-748.809,-70.14,0	1/1:121:0,121:0:0:121:4326:-389.515,-36.4246,0	0/1:68:40,28:40:1420:28:995:-69.394,0,-107.626	0/1:103:55,48:55:1944:48:1699:-122.189,0,-144.227	0/1:163:86,77:86:3030:77:2725:-196.425,0,-223.863	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:79:0,79:0:0:79:2844:-256.197,-23.7814,0	1/1:89:0,88:0:0:88:3104:-279.245,-26.4906,0	0/1:32:21,11:21:723:11:392:-25.9871,0,-55.754	0/1:58:26,32:26:915:32:1145:-85.8995,0,-65.2058	0/1:88:60,28:60:2131:28:1004:-64.1852,0,-165.568	1/1:161:0,158:0:0:158:5650:-508.26,-47.5627,0	1/1:124:3,121:3:108:121:4328:-379.618,-27.2526,0
chr07	19426714	.	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chr07	19426764	.	T	C	58943.4	PASS	AB=0.426742;ABP=94.003;AC=139;AF=0.739362;AN=188;AO=2791;CIGAR=1X;DP=3919;DPB=3919;DPRA=28.3768;EPP=5788.83;EPPR=2315.2;GTI=3;LEN=1;MEANALT=1.03261;MQM=59.6163;MQMR=59.8657;NS=94;NUMALT=1;ODDS=0.639478;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99165;QR=40202;RO=1124;RPL=32;RPP=5788.83;RPPR=2315.2;RPR=2759;RUN=1;SAF=0;SAP=6063.59;SAR=2791;SRF=0;SRP=2443.75;SRR=1124;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:16,14:16:568:14:481:-34.5842,0,-42.3344	0/1:41:25,16:25:900:16:576:-39.8318,0,-68.9788	0/1:70:39,29:39:1387:29:1004:-69.8305,0,-104.298	0/1:96:54,42:54:1929:42:1491:-105.578,0,-144.986	1/1:21:0,21:0:0:21:756:-68.3484,-6.32163,0	1/1:23:0,23:0:0:23:812:-73.4009,-6.92369,0	0/1:64:44,20:44:1584:20:720:-45.8629,0,-123.586	1/1:61:0,61:0:0:61:2173:-195.809,-18.3628,0	1/1:55:0,55:0:0:55:1940:-174.778,-16.5567,0	0/1:38:17,21:17:608:21:744:-55.5736,0,-43.5952	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:77:49,28:49:1740:28:995:-66.6847,0,-133.379	0/1:51:19,32:19:684:32:1133:-86.871,0,-46.5378	0/1:61:32,29:32:1144:29:1014:-73.2026,0,-84.8985	0/1:47:23,24:23:824:24:851:-62.761,0,-60.3349	1/1:39:1,38:1:36:38:1328:-116.218,-8.1419,0	1/1:37:0,37:0:0:37:1313:-118.468,-11.1381,0	1/1:35:0,35:0:0:35:1235:-111.439,-10.5361,0	0/1:25:14,11:14:504:11:396:-28.4561,0,-38.1723	0/1:69:34,35:34:1204:35:1252:-92.214,0,-87.8948	1/1:62:0,62:0:0:62:2205:-198.689,-18.6639,0	1/1:22:0,22:0:0:22:780:-70.5227,-6.62266,0	1/1:51:0,50:0:0:50:1766:-158.632,-15.0515,0	1/1:36:0,36:0:0:36:1287:-116.124,-10.8371,0	0/1:45:29,16:29:1040:16:576:-38.6286,0,-80.368	0/1:64:39,25:39:1404:25:888:-60.9647,0,-107.365	1/1:79:0,79:0:0:79:2802:-252.283,-23.7814,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:75:0,75:0:0:75:2683:-241.714,-22.5773,0	0/1:53:40,13:40:1440:13:449:-24.7829,0,-113.898	1/1:41:0,41:0:0:41:1468:-131.475,-12.3422,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:86:0,86:0:0:86:3050:-274.717,-25.8886,0	0/1:54:35,19:35:1260:19:680:-45.2735,0,-97.4499	0/1:40:19,21:19:684:21:756:-56.3169,0,-49.8409	0/1:4:3,1:3:104:1:32:-1.99519,0,-8.49869	0/1:43:22,21:22:780:21:732:-53.211,0,-57.5787	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:78:46,32:46:1640:32:1125:-78.0657,0,-124.408	0/1:43:28,15:28:1000:15:523:-34.4542,0,-77.3711	0/1:37:23,14:23:824:14:500:-34.1981,0,-63.3452	1/1:55:0,55:0:0:55:1980:-178.455,-16.5567,0	1/1:49:0,49:0:0:49:1724:-155.115,-14.7505,0	0/1:59:32,27:32:1136:27:968:-69.659,0,-84.6651	1/1:37:0,37:0:0:37:1300:-117.298,-11.1381,0	1/1:65:0,65:0:0:65:2323:-209.323,-19.567,0	1/1:49:0,49:0:0:49:1752:-157.961,-14.7505,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:30:20,10:20:716:10:356:-23.3494,0,-55.7368	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:43:26,17:26:936:17:612:-42.4691,0,-71.6152	0/1:25:12,13:12:417:13:459:-34.116,0,-30.3345	0/1:5:4,1:4:144:1:21:-0.594796,0,-11.805	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:49:0,49:0:0:49:1751:-157.497,-14.7505,0	1/1:64:0,64:0:0:64:2281:-205.542,-19.2659,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:48:0,48:0:0:48:1705:-153.726,-14.4494,0	1/1:62:2,60:2:72:60:2148:-186.699,-11.8271,0	0/1:47:19,28:19:684:28:972:-73.631,0,-47.7419	1/1:24:0,24:0:0:24:848:-76.6129,-7.22472,0	0/1:38:19,19:19:676:19:673:-49.3267,0,-49.7289	0/1:66:53,13:53:1896:13:453:-21.2323,0,-151.05	0/1:38:23,15:23:828:15:521:-35.7649,0,-63.405	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:35:21,14:21:752:14:504:-35.1611,0,-57.4702	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:54:0,54:0:0:54:1912:-172.153,-16.2556,0	0/1:44:30,14:30:1065:14:487:-30.9128,0,-82.9144	1/1:66:0,66:0:0:66:2331:-209.355,-19.868,0	1/1:61:0,61:0:0:61:2182:-196.644,-18.3628,0	0/1:45:21,24:21:752:24:860:-64.1698,0,-54.4599	1/1:61:0,61:0:0:61:2179:-196.364,-18.3628,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:32:0,32:0:0:32:1149:-103.72,-9.63296,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:65:0,65:0:0:65:2312:-208.336,-19.567,0	1/1:29:0,28:0:0:28:1004:-90.3161,-8.42884,0	0/1:50:26,24:26:932:24:856:-62.3073,0,-69.1474	0/1:29:18,11:18:648:11:396:-27.2529,0,-49.922	0/1:82:41,41:41:1468:41:1440:-105.209,0,-107.73	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:40:0,40:0:0:40:1423:-128.345,-12.0412,0	1/1:44:0,44:0:0:44:1565:-141.133,-13.2453,0	0/1:32:17,15:17:604:15:532:-38.5801,0,-45.0576	0/1:83:40,43:40:1436:43:1525:-112.555,0,-104.552	0/1:36:24,12:24:856:12:432:-28.3818,0,-66.524	1/1:48:1,47:1:36:47:1677:-147.526,-10.8512,0	1/1:68:0,68:0:0:68:2408:-216.959,-20.47,0
chr07	19426768	.	C	T	24847	PASS	AB=0.56639;ABP=76.8223;AC=50;AF=0.265957;AN=188;AO=1105;CIGAR=1X;DP=3919;DPB=3919;DPRA=1.00044;EPP=215.718;EPPR=136.647;GTI=0;LEN=1;MEANALT=1;MQM=59.905;MQMR=59.6198;NS=94;NUMALT=1;ODDS=0.602599;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39149;QR=99946;RO=2812;RPL=717;RPP=215.718;RPPR=136.647;RPR=388;RUN=1;SAF=0;SAP=2402.49;SAR=1105;SRF=0;SRP=6109.19;SRR=2812;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:468:14:484:-35.7607,0,-34.3318	0/1:41:16,25:16:557:25:888:-67.8968,0,-38.1124	0/1:70:29,41:29:1040:41:1437:-108.552,0,-72.8341	0/1:96:44,52:44:1545:52:1813:-134.551,0,-110.426	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6318	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:64:20,44:20:716:44:1576:-122.866,0,-45.5018	0/0:61:61,0:61:2169:0:0:0,-18.3628,-194.64	0/0:55:55,0:55:1933:0:0:0,-16.5566,-174.227	0/1:37:21,16:21:744:16:576:-41.0192,0,-55.6543	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:78:29,49:29:1036:49:1725:-132.044,0,-70.0736	0/1:54:34,20:34:1197:20:701:-47.1561,0,-91.7559	0/1:62:30,32:30:1076:32:1140:-84.2372,0,-78.4844	0/1:48:26,22:26:936:22:788:-56.7954,0,-70.11	0/0:40:39,1:39:1396:1:36:0,-8.44292,-122.339	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.704	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.969	0/1:24:11,13:11:396:13:464:-34.8728,0,-28.7571	0/1:65:33,32:33:1139:32:1136:-82.9819,0,-83.2423	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.203	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6048	0/0:52:52,0:52:1828:0:0:0,-15.6536,-164.49	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.696	0/1:45:16,29:16:572:29:1040:-80.368,0,-38.2671	0/1:65:25,40:25:896:40:1420:-108.502,0,-61.3892	0/0:77:76,0:76:2690:0:0:0,-22.8783,-242.131	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.683	0/1:53:15,38:15:532:38:1324:-103.458,0,-32.2585	0/0:40:40,0:40:1436:0:0:0,-12.0412,-128.583	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:90:90,0:90:3227:0:0:0,-27.0927,-290.628	0/1:55:19,36:19:671:36:1278:-98.7663,0,-44.1591	0/1:39:21,18:21:737:18:639:-46.0907,0,-54.9063	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:41:20,21:20:712:21:748:-55.3031,0,-51.9284	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:82:35,47:35:1214:47:1646:-123.74,0,-84.8652	0/1:44:17,27:17:608:27:960:-73.471,0,-41.7818	0/1:33:12,21:12:409:21:740:-56.9894,0,-27.2014	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.451	0/0:49:49,0:49:1725:0:0:0,-14.7505,-155.2	0/1:55:24,31:24:864:31:1108:-83.3724,0,-61.5083	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:65:65,0:65:2294:0:0:0,-19.5669,-206.709	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.599	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:27:9,18:9:320:18:644:-50.1628,0,-21.0136	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:41:17,24:17:612:24:855:-64.9288,0,-43.0712	0/1:26:13,13:13:464:13:464:-34.2707,0,-34.2684	0/1:5:1,4:1:36:4:129:-10.4191,0,-2.09312	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.186	0/0:66:66,0:66:2334:0:0:0,-19.868,-210.314	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.73	0/0:62:60,2:60:2148:2:72:0,-11.8271,-186.7	0/1:44:27,17:27:960:17:593:-40.4494,0,-73.4617	0/0:24:24,0:24:826:0:0:0,-7.22472,-74.6425	0/1:37:18,19:18:625:19:678:-50.2102,0,-45.3362	0/1:65:13,52:13:468:52:1858:-147.933,0,-22.8903	0/1:36:15,21:15:536:21:740:-56.0863,0,-37.7255	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:36:15,21:15:525:21:752:-57.1692,0,-36.7401	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.733	0/1:45:15,30:15:536:30:1041:-80.451,0,-35.0252	0/0:64:64,0:64:2268:0:0:0,-19.2659,-204.34	0/0:60:60,0:60:2121:0:0:0,-18.0618,-191.156	0/1:46:24,22:24:864:22:768:-55.593,0,-64.2295	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.864	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:33:32,0:32:1110:0:0:0,-9.63296,-99.3814	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.771	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.625	0/1:51:24,27:24:841:27:960:-71.3637,0,-60.6515	0/1:29:11,18:11:396:18:648:-49.922,0,-27.2529	0/1:83:42,41:42:1489:41:1468:-107.431,0,-109.317	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:42:42,0:42:1481:0:0:0,-12.6433,-133.577	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.118	0/1:33:16,17:16:557:17:604:-44.7566,0,-40.5216	0/1:79:40,39:40:1404:39:1400:-102.517,0,-102.873	0/1:35:12,23:12:428:23:812:-62.8649,0,-28.3204	0/0:46:45,1:45:1616:1:36:0,-10.2491,-142.041	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.238
chr07	19616709	.	A	G	35566.7	PASS	AB=0.470804;ABP=39.4013;AC=49;AF=0.260638;AN=188;AO=2343;CIGAR=1X;DP=9855;DPB=9855;DPRA=1.05677;EPP=5090.77;EPPR=16284.7;GTI=0;LEN=1;MEANALT=1;MQM=53.2774;MQMR=59.4497;NS=94;NUMALT=1;ODDS=2.80052;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80986;QR=267924;RO=7510;RPL=0;RPP=5090.77;RPPR=16284.7;RPR=2343;RUN=1;SAF=0;SAP=5090.77;SAR=2343;SRF=0;SRP=16310.8;SRR=7510;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:20,12:20:720:12:405:-26.2359,0,-55.4739	0/1:96:60,36:60:2156:36:1260:-84.3963,0,-165.384	0/1:113:66,47:66:2291:47:1625:-111.262,0,-171.996	0/1:135:74,61:74:2639:61:2126:-149.771,0,-197.106	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:22:22,0:22:788:0:0:0,-6.62266,-70.9014	0/1:141:88,53:88:3145:53:1848:-123.695,0,-240.817	0/0:198:198,0:198:7066:0:0:0,-59.6039,-633.755	0/0:77:77,0:77:2703:0:0:0,-23.1793,-243.282	0/1:113:57,56:57:2021:56:1973:-143.347,0,-147.468	0/0:143:143,0:143:5086:0:0:0,-43.0473,-457.621	0/1:91:48,43:48:1702:43:1472:-104.853,0,-125.78	0/1:87:38,49:38:1368:49:1669:-123.761,0,-97.2312	0/1:160:81,79:81:2904:79:2727:-196.178,0,-213.389	0/1:102:51,51:51:1789:51:1788:-129.633,0,-130.485	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.55	0/0:135:135,0:135:4810:0:0:0,-40.639,-432.959	0/0:114:114,0:114:4072:0:0:0,-34.3174,-366.562	0/1:102:59,43:59:2098:43:1479:-101.975,0,-158.351	0/1:155:74,81:74:2621:81:2836:-208.273,0,-189.273	0/0:157:157,0:157:5617:0:0:0,-47.2617,-505.09	0/0:106:106,0:106:3772:0:0:0,-31.9092,-339.615	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.106	0/0:119:119,0:119:4260:0:0:0,-35.8226,-383.259	0/1:84:39,45:39:1391:45:1574:-116.159,0,-100.186	0/1:432:263,169:263:9354:169:5979:-407.17,0,-710.026	0/0:183:182,0:182:6491:0:0:0,-54.7875,-583.815	0/0:55:54,1:54:1917:1:21:0,-14.4572,-170.701	0/0:169:168,1:168:6032:1:36:0,-47.2768,-539.312	0/1:78:37,41:37:1324:41:1397:-101.832,0,-95.964	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.419	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3072	0/0:12:12,0:12:402:0:0:0,-3.61236,-36.49	0/1:11:5,6:5:180:6:212:-16.063,0,-13.2407	0/1:14:10,4:10:360:4:140:-8.66532,0,-28.5216	0/0:291:291,0:291:10388:0:0:0,-87.5997,-933.302	0/1:276:151,125:151:5424:125:4352:-307.666,0,-405.13	0/1:109:61,48:61:2166:48:1644:-115.023,0,-162.318	1/1:8:0,8:0:0:8:288:-26.1,-2.40824,0	0/1:59:31,28:31:1100:28:946:-67.4098,0,-81.5387	0/1:70:41,29:41:1459:29:959:-65.2631,0,-110.335	0/1:137:73,64:73:2615:64:2135:-150.741,0,-193.472	0/1:111:58,53:58:2057:53:1835:-131.686,0,-151.98	0/1:88:48,40:48:1724:40:1335:-93.7781,0,-128.948	0/0:154:154,0:154:5504:0:0:0,-46.3586,-495.329	0/0:77:77,0:77:2746:0:0:0,-23.1793,-247.365	0/1:125:68,57:68:2431:57:1992:-140.649,0,-181.404	0/0:144:144,0:144:5155:0:0:0,-43.3483,-464	0/0:178:178,0:178:6347:0:0:0,-53.5833,-571.285	0/0:112:112,0:112:3969:0:0:0,-33.7154,-356.735	0/1:7:3,4:3:108:4:144:-11.1968,0,-7.96554	0/1:116:56,60:56:1995:60:2101:-153.894,0,-144.879	0/0:52:51,1:51:1819:1:36:0,-12.0563,-160.383	0/1:14:8,6:8:288:6:212:-15.0115,0,-22.0447	0/1:105:58,47:58:2072:47:1624:-113.797,0,-155.091	0/1:70:34,36:34:1216:36:1229:-89.4481,0,-88.6627	1/1:7:0,7:0:0:7:248:-22.6583,-2.10721,0	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:73:72,1:72:2580:1:36:0,-18.382,-228.83	0/0:150:150,0:150:5364:0:0:0,-45.1545,-482.783	0/1:13:8,5:8:284:5:180:-12.5389,0,-21.99	0/0:108:108,0:108:3844:0:0:0,-32.5112,-344.965	0/0:186:185,1:185:6628:1:36:0,-52.3959,-592.976	0/1:66:37,29:37:1309:29:1000:-70.0358,0,-98.2366	0/0:74:73,1:73:2600:1:27:0,-19.6027,-231.485	0/1:259:123,136:123:4393:136:4694:-343.342,0,-317.492	0/1:108:43,65:43:1544:65:2259:-170.454,0,-106.112	0/1:78:31,47:31:1101:47:1574:-117.531,0,-75.9098	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.028	0/1:146:72,74:72:2551:74:2540:-184.448,0,-185.826	0/1:21:15,6:15:540:6:216:-13.3862,0,-42.6126	0/0:23:22,1:22:779:1:36:0,-3.34064,-66.4776	0/1:76:37,39:37:1324:39:1379:-100.378,0,-96.5767	0/0:235:233,2:233:8318:2:72:0,-63.915,-741.523	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.23	0/1:110:71,39:71:2529:39:1321:-85.5333,0,-194.733	0/0:168:167,0:167:5938:0:0:0,-50.272,-534.103	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9787	0/0:108:105,3:105:3763:3:104:0,-22.8237,-329.143	0/0:103:103,0:103:3691:0:0:0,-31.0061,-332.236	0/0:200:198,2:198:7060:2:72:0,-53.3742,-628.336	0/0:111:111,0:111:3951:0:0:0,-33.4143,-355.534	0/1:107:51,56:51:1824:56:1907:-138.699,0,-132.203	0/1:108:48,60:48:1704:60:2021:-149.269,0,-121.124	0/1:189:101,88:101:3610:88:3032:-214.937,0,-268.192	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/0:127:127,0:127:4507:0:0:0,-38.2308,-405.616	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.845	0/1:96:51,45:51:1808:45:1526:-108.09,0,-134.091	0/1:225:118,107:118:4212:107:3738:-267.184,0,-311.363	0/1:80:35,45:35:1252:45:1569:-116.641,0,-88.9003	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.008	0/0:99:99,0:99:3542:0:0:0,-29.802,-318.722
chr07	19621078	.	G	A	36274.3	PASS	AB=0.53352;ABP=41.297;AC=48;AF=0.255319;AN=188;AO=2115;CIGAR=1X;DP=8435;DPB=8435;DPRA=0.962472;EPP=4552.35;EPPR=13400.7;GTI=0;LEN=1;MEANALT=1.03448;MQM=59.9598;MQMR=59.993;NS=94;NUMALT=1;ODDS=0.665905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75603;QR=224692;RO=6317;RPL=2110;RPP=4552.35;RPPR=13400.7;RPR=5;RUN=1;SAF=0;SAP=4595.67;SAR=2115;SRF=0;SRP=13720.2;SRR=6317;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:3,6:3:108:6:216:-16.7214,0,-7.00607	0/1:105:58,47:58:2072:47:1670:-118.977,0,-155.143	0/1:118:54,64:54:1936:64:2304:-172.099,0,-138.995	0/1:130:55,75:55:1956:75:2690:-203.211,0,-137.182	0/0:52:52,0:52:1830:0:0:0,-15.6536,-164.979	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:81:81,0:81:2882:0:0:0,-24.3834,-259.616	0/0:185:185,0:185:6587:0:0:0,-55.6905,-592.915	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/1:115:56,59:56:1991:59:2089:-153.612,0,-144.845	0/0:138:138,0:138:4886:0:0:0,-41.5421,-439.897	0/1:103:45,58:45:1586:58:2076:-156.104,0,-112.023	0/1:86:40,46:40:1432:46:1648:-122.72,0,-103.289	0/1:165:83,82:83:2955:82:2933:-214.533,0,-216.514	0/1:89:43,46:43:1532:46:1656:-122.537,0,-111.01	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.526	0/0:108:108,0:108:3825:0:0:0,-32.5112,-344.449	0/0:88:86,2:86:3064:2:72:0,-19.6539,-269.153	0/1:48:25,23:25:896:23:824:-60.0339,0,-66.5109	0/1:96:41,55:41:1456:55:1976:-149.216,0,-102.437	0/0:106:106,0:106:3772:0:0:0,-31.9092,-339.681	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/0:99:96,3:96:3420:3:104:0,-20.0992,-298.31	0/0:69:69,0:69:2452:0:0:0,-20.7711,-220.936	0/1:51:21,30:21:739:30:1052:-79.6171,0,-51.4798	0/1:228:114,114:114:4060:114:4080:-298.751,0,-296.954	0/0:147:146,1:146:5176:1:36:0,-40.6531,-462.385	0/0:51:51,0:51:1808:0:0:0,-15.3525,-163.002	0/0:186:185,0:185:6624:0:0:0,-55.6905,-595.879	0/1:169:77,92:77:2733:92:3285:-244.994,0,-195.338	0/0:109:107,2:107:3815:2:72:0,-25.9755,-336.71	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/0:271:271,0:271:9607:0:0:0,-81.5791,-864.584	0/1:103:53,50:53:1879:50:1787:-130.106,0,-138.382	0/1:108:56,52:56:2012:52:1868:-135.888,0,-148.842	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:113:56,57:56:1976:57:2036:-149.496,0,-144.096	0/1:43:25,18:25:900:18:644:-45.3463,0,-68.3767	0/1:71:46,25:46:1644:25:900:-59.9479,0,-126.875	0/1:103:45,58:45:1594:58:2061:-154.753,0,-112.743	0/1:71:34,37:34:1216:37:1328:-98.4491,0,-88.3734	0/0:49:49,0:49:1735:0:0:0,-14.7505,-156.433	0/0:91:91,0:91:3237:0:0:0,-27.3937,-291.551	0/1:136:53,82:53:1884:82:2932:-223.116,0,-128.84	0/0:70:69,1:69:2454:1:36:0,-17.4738,-217.516	0/0:136:136,0:136:4853:0:0:0,-40.9401,-436.923	0/0:83:83,0:83:2947:0:0:0,-24.9855,-265.465	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:87:39,48:39:1387:48:1724:-129.256,0,-98.9385	0/0:57:57,0:57:2023:0:0:0,-17.1587,-182.342	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:106:42,64:42:1478:64:2277:-173.281,0,-101.404	0/1:27:14,13:14:500:13:455:-33.1541,0,-37.2084	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:93:93,0:93:3293:0:0:0,-27.9958,-296.59	0/0:125:124,1:124:4396:1:32:0,-34.4294,-392.615	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:115:115,0:115:4120:0:0:0,-34.6184,-370.984	0/0:124:122,2:122:4368:2:72:0,-30.491,-386.457	0/1:87:32,55:32:1118:55:1957:-150.215,0,-74.7364	0/0:68:68,0:68:2399:0:0:0,-20.47,-216.168	0/1:122:42,80:42:1488:80:2860:-220.903,0,-97.4889	0/1:96:29,67:29:1032:67:2399:-187.267,0,-64.2946	0/1:82:38,44:38:1352:44:1580:-117.807,0,-97.2959	0/0:56:54,2:54:1920:2:72:0,-10.021,-166.24	0/1:125:70,55:70:2482:55:1961:-139.134,0,-186.004	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	0/0:93:91,2:91:3244:2:72:0,-21.1591,-285.346	0/1:42:11,31:11:392:31:1108:-87.3877,0,-22.9768	0/0:155:153,2:153:5429:2:68:0,-40.2019,-482.286	0/0:130:130,0:130:4627:0:0:0,-39.1339,-416.596	0/1:47:14,33:14:496:33:1178:-92.1793,0,-30.8259	0/0:90:89,1:89:3192:1:36:0,-23.4944,-283.905	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/0:109:109,0:109:3872:0:0:0,-32.8123,-348.678	0/0:172:172,0:172:6137:0:0:0,-51.7772,-552.43	0/0:108:108,0:108:3821:0:0:0,-32.5112,-344.089	0/1:94:47,47:47:1679:47:1688:-123.91,0,-123.1	0/1:128:57,71:57:2027:71:2534:-189.778,0,-144.17	0/1:170:113,57:113:4014:57:2035:-132.246,0,-310.276	0/0:47:46,1:46:1652:1:36:0,-10.5501,-145.37	0/0:93:93,0:93:3284:0:0:0,-27.9958,-295.784	0/0:119:119,0:119:4217:0:0:0,-35.8226,-379.713	0/1:107:57,50:57:2043:50:1788:-128.992,0,-151.931	0/1:208:102,106:102:3630:106:3808:-280.302,0,-264.291	0/1:82:18,64:18:640:64:2268:-179.697,0,-33.2449	0/0:91:91,0:91:3219:0:0:0,-27.3937,-289.935	0/0:145:145,0:145:5142:0:0:0,-43.6493,-462.926
chr07	19626465	.	TTAA	TTAG,CTAG	248329	PASS	AB=0.459995,0.538621;ABP=63.2973,59.1997;AC=141,45;AF=0.758065,0.241935;AN=186;AO=6744,2348;CIGAR=3M1X,1X2M1X;DP=9108;DPB=9108.5;DPRA=0,1.07687;EPP=127.581,23.8187;EPPR=5.18177;GTI=0;LEN=1,4;MEANALT=1.73118,2.11321;MQM=59.9404,54.9514;MQMR=60;NS=93;NUMALT=2;ODDS=0.022276;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=239621,82694;QR=36;RO=1;RPL=4,3;RPP=14612.7,5075.6;RPPR=5.18177;RPR=6740,2345;RUN=1,1;SAF=3065,1102;SAP=124.398,22.1873;SAR=3679,1246;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:57:0,37,20:0:0:37,20:1324,701:-165.31,-57.3387,-46.2006,-108.324,0,-102.303	1/2:109:0,57,52:0:0:57,52:2039,1859:-317.588,-151.322,-134.163,-166.623,0,-150.969	1/2:148:0,74,74:0:0:74,74:2642,2610:-428.039,-212.644,-190.368,-215.749,0,-193.473	1/2:187:0,85,102:0:0:85,102:3013,3540:-532.689,-287.226,-261.638,-245.814,0,-215.108	1/1:66:0,66,0:0:0:66,0:2303,0:-207.527,-19.868,0,-207.527,-19.868,-207.527	1/1:47:0,47,0:0:0:47,0:1664,0:-150.019,-14.1484,0,-150.019,-14.1484,-150.019	1/1:59:0,59,0:0:0:59,0:2094,0:-188.726,-17.7608,0,-188.726,-17.7608,-188.726	1/1:161:0,161,0:0:0:161,0:5713,0:-514.215,-48.4658,0,-514.215,-48.4658,-514.215	1/1:129:0,129,0:0:0:129,0:4573,0:-411.731,-38.8329,0,-411.731,-38.8329,-411.731	1/2:88:0,35,53:0:0:35,53:1241,1834:-249.975,-148.869,-138.333,-101.456,0,-85.5019	1/1:85:0,85,0:0:0:85,0:3015,0:-271.581,-25.5876,0,-271.581,-25.5876,-271.581	1/2:157:1,76,80:1:36:76,80:2681,2812:-442.909,-224.91,-204.969,-215.355,0,-194.21	1/2:129:0,60,69:0:0:60,69:2136,2465:-374.995,-200.905,-182.843,-174.446,0,-153.675	1/2:115:0,46,69:0:0:46,69:1637,2435:-331.016,-197.601,-183.753,-133.769,0,-112.998	1/2:130:0,47,83:0:0:47,83:1688,2918:-374.752,-237.049,-222.901,-138.059,0,-113.073	1/1:99:0,99,0:0:0:99,0:3516,0:-316.652,-29.802,0,-316.652,-29.802,-316.652	1/1:80:0,80,0:0:0:80,0:2836,0:-255.477,-24.0824,0,-255.477,-24.0824,-255.477	1/1:80:0,79,0:0:0:79,0:2824,0:-254.096,-23.7814,0,-254.096,-23.7814,-254.096	1/2:51:0,25,26:0:0:25,26:900,919:-148.517,-75.0785,-67.5527,-73.7953,0,-65.9685	1/2:127:0,73,54:0:0:73,54:2592,1888:-364.581,-153.38,-131.405,-211.552,0,-195.296	1/1:168:0,167,0:0:0:167,0:5907,0:-531.486,-50.272,0,-531.486,-50.272,-531.486	1/1:46:0,46,0:0:0:46,0:1639,0:-147.798,-13.8474,0,-147.798,-13.8474,-147.798	1/1:94:0,93,1:0:0:93,1:3320,36:-297.82,-27.9958,0,-295.04,-24.8732,-294.739	1/1:89:0,89,0:0:0:89,0:3204,0:-288.582,-26.7917,0,-288.582,-26.7917,-288.582	1/2:81:0,38,42:0:0:38,42:1358,1480:-231.085,-120.358,-108.919,-110.722,0,-98.0785	1/2:207:0,92,114:0:0:92,114:3276,4009:-591.788,-324.777,-297.082,-267.004,0,-232.687	1/1:201:0,200,0:0:0:200,0:7110,0:-639.602,-60.206,0,-639.602,-60.206,-639.602	1/1:64:0,64,0:0:0:64,0:2249,0:-202.673,-19.2659,0,-202.673,-19.2659,-202.673	1/1:180:0,179,0:0:0:179,0:6318,0:-568.484,-53.8844,0,-568.484,-53.8844,-568.484	1/2:64:0,31,31:0:0:31,31:1103,1086:-178.005,-88.1102,-78.7783,-89.8887,0,-80.5568	1/1:118:0,117,1:0:0:117,1:4169,30:-375.09,-35.2205,0,-372.695,-32.5259,-372.394	1/2:5:0,1,4:0:0:1,4:36,140:-14.6802,-11.7407,-11.4397,-3.29724,0,-2.09312	1/1:14:0,14,0:0:0:14,0:488,0:-44.2504,-4.21442,0,-44.2504,-4.21442,-44.2504	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:20:0,8,12:0:0:8,12:284,428:-58.3599,-35.2202,-32.8119,-23.4951,0,-19.8828	1/1:305:0,303,0:0:0:303,0:10781,0:-969.801,-91.2121,0,-969.801,-91.2121,-969.801	1/2:59:0,26,33:0:0:26,33:928,1164:-169.976,-94.3183,-86.4915,-76.0115,0,-66.0775	1/2:77:0,43,34:0:0:43,34:1540,1201:-223.557,-97.9638,-85.0195,-125.948,0,-115.713	.:.:.:.:.:.:.:.	1/2:175:0,85,90:0:0:85,90:3021,3156:-502.406,-256.227,-230.639,-246.473,0,-219.38	1/2:56:0,27,29:0:0:27,29:955,1038:-162.527,-84.7449,-76.6171,-78.137,0,-69.4072	1/2:123:0,55,68:0:0:55,68:1950,2379:-351.937,-193.129,-176.572,-159.159,0,-138.689	1/2:114:0,58,56:0:0:58,56:2084,1997:-332.749,-162.736,-145.277,-170.37,0,-153.513	1/2:119:0,49,70:0:0:49,70:1756,2470:-342.697,-199.478,-184.727,-143.574,0,-122.501	1/1:60:0,60,0:0:0:60,0:2133,0:-192.236,-18.0618,0,-192.236,-18.0618,-192.236	1/1:107:0,107,0:0:0:107,0:3796,0:-341.836,-32.2102,0,-341.836,-32.2102,-341.836	1/2:128:0,45,83:0:0:45,83:1551,2892:-360.792,-234.813,-221.267,-126.266,0,-101.28	1/1:70:0,70,0:0:0:70,0:2477,0:-223.183,-21.0721,0,-223.183,-21.0721,-223.183	1/1:123:0,123,0:0:0:123,0:4395,0:-395.723,-37.0267,0,-395.723,-37.0267,-395.723	1/1:63:0,63,0:0:0:63,0:2239,0:-201.772,-18.9649,0,-201.772,-18.9649,-201.772	1/2:3:0,1,2:0:0:1,2:36,70:-8.9374,-5.99579,-5.69476,-3.29724,0,-2.69518	1/2:187:0,90,97:0:0:90,97:3214,3463:-543.853,-281.821,-254.728,-262.388,0,-233.188	1/1:20:0,20,0:0:0:20,0:707,0:-63.9546,-6.0206,0,-63.9546,-6.0206,-63.9546	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:138:0,62,76:0:0:62,76:2163,2656:-391.781,-215.862,-197.198,-176.268,0,-153.39	1/2:34:0,14,20:0:0:14,20:500,704:-98.3581,-57.5911,-53.3766,-41.1218,0,-35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chr07	19626492	.	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chr07	19626718	.	G	A	11983.6	PASS	AB=0.491803;ABP=3.97144;AC=48;AF=0.255319;AN=188;AO=819;CIGAR=1X;DP=3485;DPB=3485;DPRA=0.970649;EPP=1781.45;EPPR=5789.98;GTI=2;LEN=1;MEANALT=1.01961;MQM=39.6996;MQMR=44.0023;NS=94;NUMALT=1;ODDS=0.0816274;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29297;QR=95267;RO=2665;RPL=819;RPP=1781.45;RPPR=5789.98;RPR=0;RUN=1;SAF=0;SAP=1781.45;SAR=819;SRF=0;SRP=5789.98;SRR=2665;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:22,8:22:784:8:288:-16.3782,0,-59.879	0/1:29:16,13:16:567:13:464:-31.3926,0,-41.7739	0/1:48:34,14:34:1220:14:504:-29.7669,0,-92.9505	0/1:82:43,38:43:1540:38:1349:-93.2281,0,-111.114	0/0:10:10,0:10:347:0:0:0,-3.0103,-30.2538	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.0014	0/0:37:37,0:37:1320:0:0:0,-11.1381,-117.396	0/0:37:37,0:37:1332:0:0:0,-11.1381,-115.759	0/0:77:76,1:76:2709:1:36:0,-19.6986,-234.791	0/1:42:23,19:23:816:19:684:-46.3258,0,-59.4696	0/0:20:20,0:20:705:0:0:0,-6.0206,-62.7022	0/1:50:31,19:31:1101:19:680:-44.2505,0,-81.5735	0/1:46:19,27:19:680:27:964:-69.8937,0,-46.58	0/1:17:7,10:7:248:10:356:-26.2936,0,-17.1685	0/1:37:17,20:17:612:20:720:-51.513,0,-43.2442	0/0:22:22,0:22:792:0:0:0,-6.62266,-70.3948	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.0913	0/0:17:17,0:17:595:0:0:0,-5.11751,-52.2729	0/1:11:9,2:9:324:2:72:-3.30199,0,-25.7415	0/1:57:29,28:29:1021:28:1004:-68.444,0,-72.789	0/0:39:39,0:39:1400:0:0:0,-11.7402,-123.445	0/0:62:62,0:62:2224:0:0:0,-18.6639,-195.505	0/0:55:54,1:54:1932:1:36:0,-13.076,-166.417	0/0:27:27,0:27:949:0:0:0,-8.12781,-83.5366	0/1:29:15,14:15:536:14:504:-35.475,0,-39.1097	0/1:90:48,42:48:1720:42:1480:-84.4173,0,-125.447	0/0:95:95,0:95:3389:0:0:0,-28.5978,-297.756	0/0:17:17,0:17:612:0:0:0,-5.11751,-54.4563	0/0:80:80,0:80:2859:0:0:0,-24.0824,-252.511	0/1:43:19,24:19:680:24:837:-59.0718,0,-47.5487	0/0:39:38,1:38:1360:1:36:0,-8.25947,-116.52	0/1:8:6,2:6:216:2:72:-4.20508,0,-17.0404	0/0:13:13,0:13:464:0:0:0,-3.91339,-39.7859	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.53612	0/1:6:3,3:3:108:3:108:-7.60651,0,-8.09496	0/1:12:3,9:3:108:9:324:-24.9293,0,-6.28878	0/0:90:90,0:90:3236:0:0:0,-27.0927,-284.704	0/1:68:29,39:29:1040:39:1404:-100.004,0,-71.0469	0/1:17:6,11:6:216:11:396:-29.7677,0,-14.3575	1/1:5:0,5:0:0:5:180:-16.0112,-1.50515,0	0/1:73:38,35:38:1338:35:1260:-87.6924,0,-95.7371	0/1:8:4,4:4:144:4:144:-10.4703,0,-10.6754	0/1:36:22,14:22:780:14:500:-31.2034,0,-58.5476	0/1:18:7,11:7:252:11:381:-27.8047,0,-17.2126	0/1:28:10,18:10:360:18:644:-47.5981,0,-23.7499	0/0:81:81,0:81:2885:0:0:0,-24.3834,-254.586	0/0:36:36,0:36:1292:0:0:0,-10.8371,-113.691	0/1:59:30,29:30:1080:29:1044:-73.1109,0,-77.8062	0/0:34:34,0:34:1220:0:0:0,-10.235,-104.289	0/0:31:31,0:31:1097:0:0:0,-9.33193,-97.3836	0/0:24:24,0:24:860:0:0:0,-7.22472,-76.3042	0/1:7:3,4:3:108:4:144:-10.7714,0,-7.79393	0/1:70:32,38:32:1143:38:1360:-94.8231,0,-80.3361	0/0:22:22,0:22:792:0:0:0,-6.62266,-70.3948	0/1:10:7,3:7:248:3:108:-5.78944,0,-19.2587	0/1:61:34,27:34:1220:27:968:-65.7791,0,-89.9285	0/1:28:14,14:14:504:14:504:-35.6915,0,-36.4799	0/1:6:4,2:4:144:2:72:-3.70907,0,-11.2466	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.0837	0/0:30:30,0:30:1076:0:0:0,-9.0309,-93.8979	0/0:53:53,0:53:1904:0:0:0,-15.9546,-168.525	0/1:5:4,1:4:140:1:36:-1.97555,0,-10.6949	0/0:48:48,0:48:1720:0:0:0,-14.4494,-152.486	0/0:51:51,0:51:1797:0:0:0,-15.3525,-157.176	0/1:24:7,17:7:252:17:612:-46.378,0,-15.4065	0/0:28:28,0:28:995:0:0:0,-8.42884,-87.571	0/1:64:38,26:38:1360:26:917:-58.6548,0,-100.541	0/1:59:20,39:20:716:39:1388:-102.593,0,-45.1234	0/1:7:1,6:1:36:6:216:-15.178,0,-1.42891	0/0:27:27,0:27:968:0:0:0,-8.12781,-86.1204	0/1:34:24,10:24:860:10:360:-16.0286,0,-65.4502	0/1:9:4,5:4:144:5:180:-12.3692,0,-10.3744	0/0:93:93,0:93:3335:0:0:0,-27.9958,-294.607	0/1:21:10,11:10:360:11:381:-27.0987,0,-25.8571	0/0:33:33,0:33:1169:0:0:0,-9.93399,-103.886	0/0:56:56,0:56:1989:0:0:0,-16.8577,-175.605	0/1:56:28,28:28:1004:28:1008:-71.3078,0,-70.7285	0/0:28:28,0:28:1008:0:0:0,-8.42884,-88.6318	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.1534	0/0:20:20,0:20:716:0:0:0,-6.0206,-62.9286	0/0:43:43,0:43:1525:0:0:0,-12.9443,-134.716	0/0:104:104,0:104:3728:0:0:0,-31.3071,-329.262	0/0:42:41,1:41:1472:1:36:0,-9.16256,-125.505	0/1:26:9,17:9:324:17:612:-43.9154,0,-20.4174	0/1:23:12,11:12:432:11:396:-27.7986,0,-31.62	0/1:86:41,45:41:1476:45:1620:-115.105,0,-105.06	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.2738	0/0:30:30,0:30:1080:0:0:0,-9.0309,-94.2754	0/0:20:20,0:20:716:0:0:0,-6.0206,-63.842	0/1:20:12,8:12:432:8:288:-19.3885,0,-32.3506	0/1:51:28,23:28:1004:23:828:-54.5961,0,-73.7837	0/1:36:14,22:14:488:22:792:-57.4598,0,-32.7254	0/0:42:42,0:42:1504:0:0:0,-12.6433,-131.373	0/0:51:51,0:51:1832:0:0:0,-15.3525,-162.447
chr07	19785039	.	G	C	33947.1	PASS	AB=0.50818;ABP=5.24831;AC=46;AF=0.247312;AN=186;AO=1979;CIGAR=1X;DP=8950;DPB=8950;DPRA=1.0818;EPP=4052.15;EPPR=14638.4;GTI=1;LEN=1;MEANALT=1.01887;MQM=59.9823;MQMR=59.9943;NS=93;NUMALT=1;ODDS=3.96822;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70174;QR=244478;RO=6966;RPL=29;RPP=4052.15;RPPR=14647;RPR=1950;RUN=1;SAF=0;SAP=4300.35;SAR=1979;SRF=1;SRP=15120.8;SRR=6965;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:29,24:29:1027:24:860:-61.7672,0,-76.7876	0/1:41:21,20:21:748:20:716:-52.4255,0,-55.3031	0/1:96:41,55:41:1438:55:1945:-146.424,0,-100.813	0/1:173:97,76:97:3408:76:2693:-190.536,0,-254.856	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:133:133,0:133:4606:0:0:0,-40.037,-414.707	0/0:91:91,0:91:3234:0:0:0,-27.3937,-291.282	0/0:117:117,0:117:4097:0:0:0,-35.2205,-368.918	0/1:41:22,19:22:792:19:684:-49.5481,0,-59.2634	0/0:69:69,0:69:2383:0:0:0,-20.7711,-214.725	0/1:152:82,70:82:2809:70:2494:-178.955,0,-207.289	0/1:117:62,55:62:2149:55:1908:-136.775,0,-158.454	0/1:86:44,41:44:1550:41:1445:-104.397,0,-113.843	0/1:109:53,56:53:1792:56:1993:-146.83,0,-128.742	0/0:86:86,0:86:2995:0:0:0,-25.8886,-269.782	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/0:52:52,0:52:1774:0:0:0,-15.6536,-159.867	0/1:33:20,13:20:670:13:468:-32.5257,0,-50.6773	0/1:159:78,81:78:2759:81:2897:-213.1,0,-200.689	0/0:325:325,0:325:11378:0:0:0,-97.8347,-1023.92	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:122:122,0:122:4284:0:0:0,-36.7257,-385.741	0/0:82:82,0:82:2882:0:0:0,-24.6845,-259.616	0/1:72:39,33:39:1385:33:1180:-84.8339,0,-103.273	0/1:227:104,123:104:3638:123:4351:-323.361,0,-259.292	0/0:228:228,0:228:8058:0:0:0,-68.6348,-725.247	0/0:57:57,0:57:2013:0:0:0,-17.1587,-181.441	0/0:281:281,0:281:9843:0:0:0,-84.5894,-885.83	0/1:99:43,56:43:1516:56:2008:-151.191,0,-106.928	0/0:74:72,2:72:2530:2:72:0,-15.4395,-221.113	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:262:261,1:261:9145:1:36:0,-75.2716,-819.439	0/1:142:73,69:73:2612:69:2430:-176.21,0,-192.582	0/1:65:31,34:31:1087:34:1196:-88.3765,0,-78.5714	.:.:.:.:.:.:.:.	0/1:104:66,38:66:2328:38:1356:-91.0327,0,-178.471	0/1:39:28,11:28:986:11:388:-23.5172,0,-77.312	0/1:79:33,46:33:1166:46:1636:-123.747,0,-81.4642	0/1:96:46,50:46:1608:50:1773:-130.953,0,-116.108	0/1:82:46,36:46:1623:36:1273:-90.1878,0,-121.674	0/0:114:113,0:113:3989:0:0:0,-34.0164,-359	0/0:54:54,0:54:1904:0:0:0,-16.2556,-171.635	0/1:133:78,55:78:2726:55:1963:-136.908,0,-205.544	0/0:78:78,0:78:2753:0:0:0,-23.4803,-248.012	0/0:131:131,0:131:4606:0:0:0,-39.4349,-414.707	0/0:156:155,1:155:5443:1:36:0,-43.3624,-486.405	0/1:7:3,4:3:108:4:136:-10.4683,0,-7.96796	0/1:35:12,23:12:428:23:799:-61.69,0,-28.3228	0/0:63:63,0:63:2204:0:0:0,-18.9649,-198.621	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/1:118:58,60:58:2080:60:2126:-156.086,0,-151.949	0/1:33:13,20:13:464:20:716:-54.8337,0,-32.1635	0/1:13:6,7:6:207:7:248:-18.7508,0,-15.0535	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:70:70,0:70:2443:0:0:0,-21.0721,-220.125	0/0:123:122,1:122:4250:1:36:0,-33.4284,-379.087	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:285:283,0:283:9957:0:0:0,-85.1915,-895.72	0/0:178:173,5:173:6102:5:176:0,-37.3983,-533.101	0/1:122:64,58:64:2256:58:2058:-148.763,0,-166.576	0/0:45:45,0:45:1594:0:0:0,-13.5463,-143.749	0/1:156:46,110:46:1615:110:3904:-304.591,0,-98.6749	0/1:141:54,87:54:1896:87:3128:-239.3,0,-128.47	0/1:46:29,17:29:1018:17:600:-40.4818,0,-78.0831	0/0:39:39,0:39:1377:0:0:0,-11.7402,-124.227	0/1:50:24,26:24:851:26:918:-67.8838,0,-61.858	0/1:35:14,21:14:480:21:743:-56.6573,0,-32.9878	0/0:104:104,0:104:3712:0:0:0,-31.3071,-334.283	0/1:156:81,75:81:2797:75:2670:-193.584,0,-205.009	0/0:147:147,0:147:5173:0:0:0,-44.2514,-465.714	0/0:203:201,2:201:7024:2:72:0,-54.2724,-625.396	0/1:31:16,15:16:572:15:510:-36.8885,0,-42.4815	0/0:164:164,0:164:5815:0:0:0,-49.3689,-523.456	0/0:16:16,0:16:550:0:0:0,-4.81648,-49.8234	0/0:130:130,0:130:4590:0:0:0,-39.1339,-413.268	0/0:61:61,0:61:2095:0:0:0,-18.3628,-188.816	0/0:225:223,2:223:7873:2:72:0,-60.895,-701.765	0/0:75:75,0:75:2598:0:0:0,-22.5772,-234.022	0/1:118:55,63:55:1933:63:2248:-167.062,0,-138.721	0/1:91:50,41:50:1766:41:1461:-104.39,0,-131.828	0/1:186:93,93:93:3249:93:3262:-237.81,0,-236.639	0/0:26:26,0:26:902:0:0:0,-7.82678,-81.4929	0/0:105:105,0:105:3627:0:0:0,-31.6081,-326.634	0/0:96:95,0:95:3318:0:0:0,-28.5978,-298.521	0/1:66:38,28:38:1346:28:978:-68.4632,0,-101.571	0/1:113:66,47:66:2306:47:1640:-113.869,0,-173.782	0/1:115:26,89:26:891:89:3156:-249.646,0,-45.8808	0/0:94:94,0:94:3329:0:0:0,-28.2968,-299.829	0/0:196:192,4:192:6719:4:144:0,-45.6883,-591.481
chr07	19821403	.	AC	TT,AT	145527	PASS	AB=0.637456,0.359829;ABP=426.259,443.139;AC=140,46;AF=0.752688,0.247312;AN=186;AO=5818,940;CIGAR=2X,1M1X;DP=6772;DPB=6774;DPRA=10.5047,0.754032;EPP=12636.6,2044.19;EPPR=5.18177;GTI=4;LEN=2,1;MEANALT=1.61957,2.10204;MQM=59.2528,59.9234;MQMR=60;NS=93;NUMALT=2;ODDS=5.25767;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=72,72;PQR=0;PRO=0;QA=206179,33655;QR=36;RO=1;RPL=0,0;RPP=12636.6,2044.19;RPPR=5.18177;RPR=5818,940;RUN=1,1;SAF=5818,940;SAP=12636.6,2044.19;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:52:0,33,19:0:0:33,19:1160,684:-150.572,-56.1708,-46.2368,-94.7579,0,-89.0383	1/2:38:0,26,12:0:0:26,12:904,432:-109.04,-35.6088,-27.7821,-73.7866,0,-70.1742	1/2:101:0,66,35:0:0:66,35:2357,1244:-293.782,-101.727,-81.8587,-192.411,0,-181.875	1/2:151:0,105,46:0:0:105,46:3719,1629:-435.935,-133.049,-101.441,-303.24,0,-289.393	1/1:31:0,31,0:0:0:31,0:1102,0:-99.4451,-9.33193,0,-99.4451,-9.33193,-99.4451	1/1:35:0,35,0:0:0:35,0:1241,0:-110.802,-10.5361,0,-110.802,-10.5361,-110.802	1/1:69:0,69,0:0:0:69,0:2410,0:-216.694,-20.7711,0,-216.694,-20.7711,-216.694	1/1:127:0,126,0:0:0:126,0:4427,0:-397.856,-37.9298,0,-397.856,-37.9298,-397.856	1/1:81:0,81,0:0:0:81,0:2870,0:-258.402,-24.3834,0,-258.402,-24.3834,-258.402	1/2:51:0,28,23:0:0:28,23:1008,828:-150.154,-67.9204,-59.4916,-82.5938,0,-75.6701	1/1:62:0,62,0:0:0:62,0:2198,0:-198.059,-18.6639,0,-198.059,-18.6639,-198.059	1/2:83:1,50,32:1:36:50,32:1796,1152:-236.582,-90.7419,-78.6279,-143.203,0,-136.507	1/2:62:0,40,22:0:0:40,22:1430,792:-181.466,-64.9815,-52.9403,-116.843,0,-110.221	1/2:39:0,30,9:0:0:30,9:1059,324:-112.619,-26.7966,-17.7657,-86.1798,0,-83.4705	1/2:54:0,37,17:0:0:37,17:1326,612:-158.427,-50.2959,-39.1578,-108.491,0,-103.373	1/1:57:0,57,0:0:0:57,0:2031,0:-183.015,-17.1587,0,-183.015,-17.1587,-183.015	1/1:40:0,40,0:0:0:40,0:1417,0:-127.718,-12.0412,0,-127.718,-12.0412,-127.718	1/1:32:0,32,0:0:0:32,0:1120,0:-101.105,-9.63296,0,-101.105,-9.63296,-101.105	1/2:13:0,7,6:0:0:7,6:246,216:-38.0031,-17.9843,-15.8771,-20.3747,0,-18.5685	1/2:68:0,46,22:0:0:46,22:1625,792:-197.285,-64.983,-51.1356,-132.66,0,-126.037	1/1:161:0,161,0:0:0:161,0:5685,0:-511.477,-48.4658,0,-511.477,-48.4658,-511.477	1/1:98:0,98,0:0:0:98,0:3480,0:-313.381,-29.5009,0,-313.381,-29.5009,-313.381	1/1:115:0,115,0:0:0:115,0:4070,0:-366.284,-34.6185,0,-366.284,-34.6185,-366.284	1/1:29:0,29,0:0:0:29,0:1031,0:-93.0624,-8.72987,0,-93.0624,-8.72987,-93.0624	1/2:40:0,20,20:0:0:20,20:716,720:-117.463,-59.1082,-53.0876,-58.7137,0,-52.6931	1/2:198:0,135,63:0:0:135,63:4809,2245:-574.435,-183.347,-142.708,-391.444,0,-372.479	1/1:161:0,161,0:0:0:161,0:5708,0:-513.597,-48.4658,0,-513.597,-48.4658,-513.597	1/1:37:0,37,0:0:0:37,0:1332,0:-120.048,-11.1381,0,-120.048,-11.1381,-120.048	1/1:236:0,236,0:0:0:236,0:8392,0:-754.995,-71.0431,0,-754.995,-71.0431,-754.995	1/2:91:0,66,25:0:0:66,25:2318,900:-262.41,-73.7953,-53.9273,-188.972,0,-181.446	1/1:100:0,98,1:0:0:98,1:3452,36:-310.057,-29.5009,0,-307.12,-26.4986,-306.819	1/2:6:0,1,5:0:0:1,5:36,180:-17.9843,-15.0469,-14.7459,-3.29724,0,-1.79209	1/1:19:0,19,0:0:0:19,0:654,0:-59.1338,-5.71957,0,-59.1338,-5.71957,-59.1338	1/1:2:0,2,0:0:0:2,0:64,0:-6.0781,-0.60206,0,-6.0781,-0.60206,-6.0781	2/2:7:0,0,7:0:0:0,7:0,252:-23.029,-23.029,-23.029,-2.10721,-2.10721,0	1/2:12:0,3,9:0:0:3,9:108,324:-35.6088,-26.7966,-25.8935,-9.17208,0,-6.46281	1/1:212:0,212,0:0:0:212,0:7555,0:-679.625,-63.8184,0,-679.625,-63.8184,-679.625	1/2:75:0,46,29:0:0:46,29:1648,1036:-218.855,-84.824,-70.9767,-134.388,0,-125.658	1/2:31:0,23,8:0:0:23,8:811,288:-89.8429,-23.8509,-16.9272,-66.3498,0,-63.9416	.:.:.:.:.:.:.:.	1/2:57:0,44,13:0:0:44,13:1565,468:-166.068,-38.5463,-25.3009,-127.88,0,-123.967	1/2:21:0,14,7:0:0:14,7:502,252:-61.8203,-20.9217,-16.7073,-41.2578,0,-39.1505	1/2:91:0,53,38:0:0:53,38:1854,1364:-262.402,-111.622,-95.667,-151.136,0,-139.696	1/2:33:0,21,11:0:0:21,11:739,396:-92.561,-32.4306,-26.109,-60.2448,0,-56.9335	1/2:41:0,23,17:0:0:23,17:789,608:-113.564,-49.518,-42.5943,-63.9822,0,-58.8647	1/1:106:0,106,0:0:0:106,0:3768,0:-339.283,-31.9092,0,-339.283,-31.9092,-339.283	1/1:83:0,83,0:0:0:83,0:2967,0:-266.891,-24.9855,0,-266.891,-24.9855,-266.891	1/2:113:0,55,56:0:0:55,56:1942,1989:-320.115,-161.995,-145.439,-158.114,0,-141.257	1/1:81:0,81,0:0:0:81,0:2846,0:-256.367,-24.3834,0,-256.367,-24.3834,-256.367	1/1:117:0,117,0:0:0:117,0:4180,0:-375.94,-35.2205,0,-375.94,-35.2205,-375.94	1/1:60:0,60,0:0:0:60,0:2154,0:-194.1,-18.0618,0,-194.1,-18.0618,-194.1	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/2:75:0,48,27:0:0:48,27:1726,967:-219.9,-79.2193,-64.7699,-141.04,0,-132.912	1/1:56:0,56,0:0:0:56,0:1984,0:-178.589,-16.8577,0,-178.589,-16.8577,-178.589	1/2:10:0,1,9:0:0:1,9:36,309:-28.3701,-25.4314,-25.1304,-3.2968,0,-0.587529	1/2:96:0,64,32:0:0:64,32:2286,1152:-280.666,-94.3572,-75.0913,-186.667,0,-177.034	1/2:45:0,34,11:0:0:34,11:1198,396:-130.167,-32.6714,-22.4364,-97.8539,0,-94.5426	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.2972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chr07	19821643	.	C	A	19864.3	PASS	AB=0.432933;ABP=116.896;AC=47;AF=0.25;AN=188;AO=1268;CIGAR=1X;DP=6318;DPB=6318;DPRA=0.980273;EPP=2756.44;EPPR=10955.9;GTI=5;LEN=1;MEANALT=1.02041;MQM=59.6554;MQMR=59.9594;NS=94;NUMALT=1;ODDS=0.61146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45401;QR=180162;RO=5048;RPL=1268;RPP=2756.44;RPPR=10964.6;RPR=0;RUN=1;SAF=0;SAP=2756.44;SAR=1268;SRF=1;SRP=10955.9;SRR=5047;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:11,6:11:380:6:216:-14.673,0,-29.4145	0/1:102:71,31:71:2552:31:1112:-69.6854,0,-199.225	0/1:75:45,29:45:1612:29:1044:-71.5938,0,-122.734	0/1:105:45,60:45:1567:60:2133:-160.611,0,-109.079	0/0:54:54,0:54:1891:0:0:0,-16.2556,-170.463	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:158:158,0:158:5641:0:0:0,-47.5627,-507.533	0/0:73:73,0:73:2593:0:0:0,-21.9752,-233.539	0/1:56:23,33:23:820:33:1184:-89.9399,0,-57.2648	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:52:36,16:36:1288:16:576:-36.5037,0,-100.57	0/1:62:47,15:47:1684:15:536:-29.911,0,-133.183	0/1:64:48,16:48:1705:16:572:-32.5475,0,-134.468	0/1:61:38,23:38:1356:23:828:-56.4809,0,-103.978	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.715	0/0:89:89,0:89:3166:0:0:0,-26.7917,-284.893	0/1:34:24,10:24:849:10:360:-22.501,0,-66.4928	0/1:153:67,86:67:2404:86:3049:-228.561,0,-170.559	0/0:128:128,0:128:4562:0:0:0,-38.5318,-410.744	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.554	0/1:41:33,8:33:1165:8:288:-13.9252,0,-92.8109	0/1:210:67,143:67:2359:143:5122:-397.844,0,-149.348	0/0:166:166,0:166:5929:0:0:0,-49.971,-533.718	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/1:101:46,55:46:1652:55:1976:-147.702,0,-118.564	0/0:64:62,2:62:2194:2:72:0,-12.4292,-190.886	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:173:172,1:172:6134:1:36:0,-48.4799,-548.561	0/1:108:45,63:45:1600:63:2256:-170.643,0,-111.779	0/1:62:49,13:49:1760:13:464:-23.4198,0,-140.02	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:119:61,58:61:2184:58:2073:-150.842,0,-161.003	0/1:23:15,8:15:540:8:284:-18.9797,0,-42.0128	0/1:80:48,32:48:1728:32:1137:-78.5546,0,-131.723	0/1:68:49,19:49:1756:19:684:-41.4203,0,-137.854	0/1:63:49,14:49:1756:14:504:-26.7332,0,-139.359	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.425	0/1:111:57,54:57:2052:54:1944:-141.815,0,-151.535	0/0:78:78,0:78:2750:0:0:0,-23.4803,-247.741	0/0:93:93,0:93:3313:0:0:0,-27.9958,-298.388	0/0:39:38,0:38:1349:0:0:0,-11.4391,-121.349	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:81:41,40:41:1468:40:1432:-104.758,0,-108.033	0/0:22:22,0:22:765:0:0:0,-6.62266,-69.1659	0/1:17:13,4:13:449:4:136:-7.45803,0,-35.62	0/1:75:45,30:45:1612:30:1072:-74.206,0,-122.793	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:9:5,4:5:180:4:136:-9.86534,0,-13.8428	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.8287	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/0:109:107,2:107:3816:2:72:0,-25.9755,-336.802	0/1:59:25,34:25:884:34:1220:-91.563,0,-62.1176	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.658	0/1:125:60,65:60:2126:65:2324:-171.683,0,-153.976	0/1:78:15,63:15:536:63:2268:-180.895,0,-25.0945	0/1:24:20,4:20:716:4:144:-6.0889,0,-57.543	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:76:43,33:43:1548:33:1188:-84.3503,0,-116.735	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:57:40,17:40:1420:17:608:-37.8851,0,-110.939	0/0:100:100,0:100:3562:0:0:0,-30.103,-320.786	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.472	0/1:97:59,38:59:2112:38:1360:-93.4538,0,-161.149	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:103:103,0:103:3673:0:0:0,-31.0061,-330.768	0/0:109:109,0:109:3896:0:0:0,-32.8123,-350.823	0/0:106:106,0:106:3777:0:0:0,-31.9092,-340.129	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:71:47,24:47:1680:24:864:-56.7047,0,-130.114	0/1:84:65,19:65:2336:19:684:-36.6015,0,-185.199	0/1:105:76,29:76:2720:29:1035:-61.8549,0,-213.433	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/1:27:20,7:20:716:7:252:-14.9011,0,-56.6399	0/1:42:28,14:28:1000:14:500:-32.6883,0,-77.6721	0/1:52:36,16:36:1292:16:576:-36.5214,0,-100.93	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:127:127,0:127:4522:0:0:0,-38.2308,-407.017
chr07	19945770	.	TTTA	CTTA	108772	PASS	AB=0.536008;ABP=38.6647;AC=140;AF=0.744681;AN=188;AO=5156;CIGAR=1X3M;DP=6638;DPB=6638;DPRA=0;EPP=11199.1;EPPR=3175.53;GTI=1;LEN=1;MEANALT=1.18085;MQM=59.9676;MQMR=59.9719;NS=94;NUMALT=1;ODDS=2.6359;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183925;QR=51438;RO=1461;RPL=0;RPP=11199.1;RPPR=3175.53;RPR=5156;RUN=1;SAF=0;SAP=11199.1;SAR=5156;SRF=0;SRP=3175.53;SRR=1461;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:29,50:29:1003:50:1777:-136.129,0,-66.4964	0/1:40:18,22:18:625:22:788:-59.2036,0,-44.5325	0/1:239:108,130:108:3774:130:4660:-347.616,0,-267.916	0/1:103:53,48:53:1859:48:1705:-122.97,0,-136.825	1/1:29:0,29:0:0:29:1038:-93.7339,-8.72987,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:112:0,112:0:0:112:4024:-362.347,-33.7154,0	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	1/1:111:0,111:0:0:111:3953:-355.958,-33.4143,0	0/1:40:13,27:13:457:27:964:-75.0356,0,-29.4223	1/1:53:0,53:0:0:53:1891:-170.468,-15.9546,0	0/1:112:50,62:50:1731:62:2224:-166.709,0,-122.356	0/1:67:34,33:34:1215:33:1179:-86.2482,0,-89.4881	0/1:48:28,20:28:994:20:720:-50.6793,0,-75.3258	0/1:82:42,39:42:1481:39:1388:-100.485,0,-108.842	1/1:55:0,55:0:0:55:1946:-175.388,-16.5567,0	1/1:49:0,49:0:0:49:1747:-157.514,-14.7505,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:35:18,16:18:641:16:572:-41.2845,0,-47.4912	0/1:51:26,25:26:902:25:896:-65.6078,0,-66.1379	1/1:174:1,173:1:36:173:6159:-550.802,-48.7809,0	1/1:105:0,104:0:0:104:3689:-331.911,-31.3071,0	1/1:59:0,59:0:0:59:2114:-190.528,-17.7608,0	1/1:42:0,42:0:0:42:1491:-134.484,-12.6433,0	0/1:61:24,37:24:859:37:1332:-101.82,0,-59.2693	0/1:136:68,68:68:2391:68:2425:-177.564,0,-174.508	1/1:169:0,169:0:0:169:6012:-541.157,-50.8741,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:170:81,89:81:2854:89:3170:-234.339,0,-205.925	0/1:79:27,51:27:957:51:1819:-140.15,0,-62.6061	1/1:103:0,103:0:0:103:3687:-332.031,-31.0061,0	0/1:8:7,1:7:249:1:36:-1.19004,0,-20.3474	1/1:32:0,32:0:0:32:1143:-103.18,-9.63296,0	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	0/1:19:6,13:6:208:13:464:-36.3779,0,-13.3394	0/1:31:10,21:10:357:21:756:-59.0353,0,-23.1403	1/1:166:0,166:0:0:166:5903:-531.381,-49.971,0	0/1:89:52,37:52:1840:37:1320:-92.3103,0,-139.085	0/1:57:29,28:29:1007:28:999:-73.0658,0,-73.7813	0/1:9:3,6:3:105:6:216:-17.0812,0,-7.0867	0/1:84:31,53:31:1082:53:1873:-143.561,0,-72.401	0/1:47:24,23:24:853:23:824:-60.3349,0,-62.9429	0/1:120:44,75:44:1574:75:2684:-205.623,0,-105.77	0/1:37:15,21:15:537:21:748:-56.4956,0,-37.5154	0/1:38:22,16:22:775:16:568:-40.0127,0,-58.6326	1/1:109:0,108:0:0:108:3841:-345.523,-32.5112,0	1/1:68:0,68:0:0:68:2409:-217.066,-20.47,0	0/1:92:48,44:48:1680:44:1580:-114.797,0,-123.79	1/1:56:1,55:1:35:55:1961:-173.265,-13.3591,0	1/1:60:1,59:1:36:59:2116:-187.11,-14.4635,0	1/1:82:0,81:0:0:81:2903:-261.165,-24.3834,0	0/1:13:3,10:3:95:10:360:-28.8309,0,-4.95094	0/1:80:24,55:24:844:55:1968:-153.41,0,-52.2915	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:7:6,1:6:193:1:36:-1.49107,0,-15.5788	0/1:66:31,35:31:1082:35:1229:-91.0434,0,-77.819	0/1:25:7,18:7:251:18:644:-50.7648,0,-15.4097	0/1:15:6,9:6:214:9:324:-24.9904,0,-15.0924	1/1:13:0,11:0:0:11:396:-35.6229,-3.31133,0	1/1:66:0,66:0:0:66:2343:-211.114,-19.868,0	1/1:106:0,106:0:0:106:3781:-340.471,-31.9092,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:96:0,96:0:0:96:3452:-310.891,-28.8989,0	1/1:127:1,125:1:36:125:4455:-397.508,-34.6913,0	0/1:51:18,33:18:632:33:1184:-91.5158,0,-41.8545	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	0/1:74:28,45:28:984:45:1616:-123.512,0,-66.653	0/1:75:49,26:49:1735:26:936:-61.9822,0,-133.858	0/1:51:23,28:23:816:28:996:-74.6024,0,-58.4095	1/1:44:0,41:0:0:41:1464:-131.696,-12.3422,0	0/1:46:20,25:20:707:25:892:-66.7105,0,-50.0681	0/1:17:7,10:7:242:10:360:-27.6268,0,-16.9957	1/1:122:0,122:0:0:122:4303:-387.445,-36.7257,0	0/1:49:29,20:29:1038:20:701:-48.6613,0,-78.9841	1/1:247:0,247:0:0:247:8830:-794.68,-74.3544,0	1/1:84:0,84:0:0:84:3000:-270.161,-25.2865,0	0/1:106:49,57:49:1738:57:2035:-151.512,0,-124.795	1/1:46:0,46:0:0:46:1652:-148.967,-13.8474,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:47:0,47:0:0:47:1677:-151.215,-14.1484,0	1/1:71:0,71:0:0:71:2517:-226.781,-21.3731,0	1/1:138:0,138:0:0:138:4934:-444.21,-41.5421,0	1/1:56:0,56:0:0:56:1967:-177.302,-16.8577,0	0/1:84:40,44:40:1415:44:1562:-115.584,0,-102.361	0/1:51:22,29:22:778:29:1027:-77.3896,0,-54.9902	0/1:125:56,69:56:1974:69:2471:-185.014,0,-140.306	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:52:0,52:0:0:52:1833:-165.249,-15.6536,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:90:33,57:33:1165:57:2048:-157.499,0,-78.0641	0/1:117:64,53:64:2252:53:1883:-134.527,0,-167.724	0/1:46:29,17:29:1022:17:608:-41.2046,0,-78.4446	1/1:58:0,58:0:0:58:2065:-186.119,-17.4597,0	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0
chr07	19945779	.	TAAAC	TAAAG	22380.1	PASS	AB=0.44573;ABP=84.7947;AC=48;AF=0.255319;AN=188;AO=1428;CIGAR=4M1X;DP=6783;DPB=6783;DPRA=0.896218;EPP=3095.19;EPPR=11563.9;GTI=2;LEN=1;MEANALT=1.19608;MQM=59.9867;MQMR=59.9511;NS=94;NUMALT=1;ODDS=0.448479;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50675;QR=187747;RO=5332;RPL=1;RPP=3095.19;RPPR=11563.9;RPR=1427;RUN=1;SAF=0;SAP=3103.87;SAR=1428;SRF=0;SRP=11581.3;SRR=5332;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:54,29:54:1878:29:1040:-68.9289,0,-144.31	0/1:40:23,17:23:813:17:604:-42.6494,0,-61.4501	0/1:248:141,105:141:4976:105:3733:-261.824,0,-373.65	0/1:99:47,52:47:1656:52:1826:-134.817,0,-119.525	0/0:29:29,0:29:1022:0:0:0,-8.72987,-92.2924	0/0:51:51,0:51:1777:0:0:0,-15.3525,-160.211	0/0:116:116,0:116:4103:0:0:0,-34.9195,-369.459	0/0:97:97,0:97:3453:0:0:0,-29.1999,-310.985	0/0:115:115,0:115:4028:0:0:0,-34.6184,-362.556	0/1:39:27,9:27:938:9:324:-18.3264,0,-73.5574	0/0:56:56,0:56:1979:0:0:0,-16.8577,-178.384	0/1:112:63,49:63:2214:49:1698:-119.383,0,-165.81	0/1:68:34,33:34:1211:33:1160:-84.1753,0,-88.766	0/1:49:20,29:20:693:29:1040:-79.1639,0,-47.9393	0/1:81:41,40:41:1437:40:1419:-103.623,0,-105.24	0/0:55:55,0:55:1917:0:0:0,-16.5566,-172.799	0/0:50:47,0:47:1654:0:0:0,-14.1484,-148.515	0/0:29:29,0:29:989:0:0:0,-8.72987,-89.3151	0/1:36:18,18:18:629:18:616:-44.9212,0,-46.0979	0/1:52:26,26:26:913:26:932:-68.543,0,-66.8316	0/0:181:180,1:180:6271:1:36:0,-50.8882,-560.862	0/0:112:112,0:112:3945:0:0:0,-33.7154,-355.248	0/0:60:60,0:60:2134:0:0:0,-18.0618,-192.329	0/0:46:46,0:46:1586:0:0:0,-13.8474,-143.026	0/1:62:38,24:38:1340:24:849:-58.064,0,-102.236	0/1:136:69,67:69:2428:67:2404:-175.676,0,-177.834	0/0:173:173,0:173:6147:0:0:0,-52.0782,-553.248	0/0:28:28,0:28:980:0:0:0,-8.42884,-88.5122	0/1:172:91,81:91:3203:81:2874:-207.12,0,-236.705	0/1:80:52,28:52:1805:28:993:-65.6001,0,-138.645	0/0:102:102,0:102:3583:0:0:0,-30.7051,-322.682	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.393	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.902	0/1:20:14,6:14:486:6:216:-13.7699,0,-38.0476	0/1:33:23,8:23:819:8:288:-16.5756,0,-64.3412	0/0:172:171,0:171:6019:0:0:0,-51.4761,-541.465	0/1:89:37,51:37:1330:51:1820:-137.339,0,-93.259	0/1:59:29,29:29:1007:29:999:-72.5325,0,-73.2553	0/1:9:6,3:6:211:3:99:-6.52731,0,-16.624	0/1:87:56,31:56:1962:31:1091:-72.3091,0,-150.665	0/1:46:23,22:23:822:22:773:-55.9837,0,-60.3968	0/1:119:75,44:75:2649:44:1576:-106.309,0,-202.835	0/1:38:24,14:24:835:14:504:-34.259,0,-64.0249	0/1:39:18,21:18:621:21:733:-54.5495,0,-44.4725	0/0:115:115,0:115:4043:0:0:0,-34.6184,-364.061	0/0:71:71,0:71:2513:0:0:0,-21.3731,-226.421	0/1:93:46,47:46:1630:47:1676:-123.131,0,-118.992	0/0:57:56,1:56:1988:1:32:0,-13.9594,-175.994	0/0:60:59,1:59:2102:1:36:0,-14.4635,-185.851	0/0:84:83,0:83:2923:0:0:0,-24.9855,-262.946	0/1:13:10,3:10:345:3:108:-6.16178,0,-27.4685	0/1:82:60,22:60:2089:22:788:-46.5603,0,-163.592	0/0:25:25,0:25:894:0:0:0,-7.52575,-80.7804	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:66:35,31:35:1252:31:1103:-79.7118,0,-93.1172	0/1:28:21,7:21:748:7:252:-14.5977,0,-59.2163	0/1:15:9,6:9:312:6:216:-15.2751,0,-23.8996	0/0:13:13,0:13:463:0:0:0,-3.91339,-42.0069	0/0:67:67,0:67:2360:0:0:0,-20.169,-212.645	0/0:106:105,0:105:3713:0:0:0,-31.6081,-333.999	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:100:100,0:100:3562:0:0:0,-30.103,-320.789	0/0:134:134,0:134:4669:0:0:0,-40.338,-420.373	0/1:53:35,18:35:1239:18:644:-42.336,0,-95.8587	0/0:42:42,0:42:1479:0:0:0,-12.6433,-133.405	0/1:76:48,27:48:1681:27:960:-63.8853,0,-128.744	0/1:73:26,47:26:915:47:1684:-129.872,0,-60.6908	0/1:51:29,22:29:1014:22:779:-55.0795,0,-76.2174	0/0:47:47,0:47:1630:0:0:0,-14.1484,-146.985	0/1:46:26,19:26:916:19:665:-46.2671,0,-68.8488	0/1:17:10,7:10:357:7:252:-17.9068,0,-27.3546	0/0:124:124,0:124:4348:0:0:0,-37.3277,-391.503	0/1:50:21,29:21:746:29:1040:-78.8629,0,-52.4134	0/0:254:253,0:253:8923:0:0:0,-76.1606,-802.703	0/0:87:87,0:87:3066:0:0:0,-26.1896,-276.041	0/1:109:61,48:61:2155:48:1699:-120.383,0,-161.405	0/0:47:47,0:47:1663:0:0:0,-14.1484,-149.957	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5354	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.037	0/0:71:70,0:70:2474:0:0:0,-21.0721,-222.553	0/0:145:145,0:145:5109:0:0:0,-43.6493,-459.959	0/0:58:56,0:56:1942:0:0:0,-16.8577,-174.323	0/1:84:44,40:44:1562:40:1428:-103.531,0,-115.586	0/1:51:29,22:29:997:22:775:-54.7187,0,-74.6848	0/1:124:70,54:70:2485:54:1904:-134.307,0,-186.576	0/0:27:27,0:27:952:0:0:0,-8.12781,-85.995	0/0:55:55,0:55:1947:0:0:0,-16.5566,-175.506	0/0:71:71,0:71:2493:0:0:0,-21.3731,-224.623	0/1:90:57,33:57:2012:33:1166:-78.1529,0,-154.26	0/1:115:53,62:53:1873:62:2201:-163.735,0,-134.23	0/1:46:17,29:17:595:29:1044:-80.4274,0,-40.0294	0/0:60:60,0:60:2123:0:0:0,-18.0618,-191.338	0/0:86:86,0:86:3056:0:0:0,-25.8886,-275.27
chr07	20000932	.	A	G	103996	PASS	AB=0.621386;ABP=326.168;AC=138;AF=0.75;AN=184;AO=4868;CIGAR=1X;DP=5828;DPB=5828;DPRA=0;EPP=10573.7;EPPR=2087.62;GTI=8;LEN=1;MEANALT=1;MQM=59.9856;MQMR=59.9531;NS=92;NUMALT=1;ODDS=2.89859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173718;QR=34343;RO=960;RPL=0;RPP=10573.7;RPPR=2087.62;RPR=4868;RUN=1;SAF=4868;SAP=10573.7;SAR=0;SRF=960;SRP=2087.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:2,15:2:72:15:540:-43.819,0,-1.71921	0/1:81:28,53:28:1004:53:1880:-145.093,0,-66.2924	0/1:32:9,23:9:324:23:824:-64.8494,0,-19.8729	0/1:104:36,68:36:1292:68:2417:-186.478,0,-85.2069	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	1/1:96:0,96:0:0:96:3432:-309.094,-28.8989,0	1/1:125:0,125:0:0:125:4476:-403.009,-37.6288,0	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	0/1:125:49,76:49:1760:76:2701:-205.706,0,-121.055	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0	0/1:58:25,33:25:896:33:1172:-88.3278,0,-63.5006	0/1:43:21,22:21:737:22:788:-58.3005,0,-53.7063	0/1:55:17,38:17:612:38:1364:-106.504,0,-38.8568	0/1:53:24,29:24:856:29:1044:-78.3202,0,-61.4065	1/1:41:0,41:0:0:41:1457:-131.424,-12.3422,0	1/1:76:0,76:0:0:76:2715:-244.593,-22.8783,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:65:25,40:25:900:40:1436:-109.971,0,-61.7541	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	1/1:49:0,49:0:0:49:1749:-157.692,-14.7505,0	1/1:33:0,33:0:0:33:1188:-107.226,-9.93399,0	1/1:62:0,62:0:0:62:2203:-198.533,-18.6639,0	0/1:22:6,16:6:212:16:572:-45.1908,0,-12.8021	0/1:214:86,128:86:3043:128:4576:-347.584,0,-209.641	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:30:0,30:0:0:30:1059:-95.6193,-9.0309,0	0/1:93:34,59:34:1224:59:2120:-163.073,0,-82.4713	0/1:85:30,55:30:1080:55:1943:-149.557,0,-71.9257	1/1:82:0,82:0:0:82:2925:-263.484,-24.6845,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:150:0,150:0:0:150:5369:-483.34,-45.1545,0	0/1:111:22,89:22:788:89:3192:-254.089,0,-37.8305	0/1:44:15,29:15:536:29:1036:-80.3086,0,-35.3295	.:.:.:.:.:.:.:.	0/1:94:36,58:36:1273:58:2042:-155.752,0,-86.5695	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:71:16,55:16:572:55:1961:-155.39,0,-30.4403	0/1:52:24,28:24:864:28:1008:-75.3828,0,-62.429	0/1:50:20,30:20:716:30:1076:-82.1014,0,-49.7162	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:59:0,59:0:0:59:2099:-189.178,-17.7608,0	0/1:116:39,77:39:1374:77:2753:-213.091,0,-89.0351	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	1/1:94:0,94:0:0:94:3334:-300.274,-28.2968,0	1/1:111:0,111:0:0:111:3972:-357.671,-33.4143,0	0/1:3:1,2:1:36:2:61:-4.89014,0,-2.69518	0/1:59:23,36:23:828:36:1281:-97.8305,0,-57.0833	1/1:42:0,42:0:0:42:1485:-133.943,-12.6433,0	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:45:28,17:28:1004:17:612:-41.8671,0,-77.1295	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:125:0,125:0:0:125:4449:-400.579,-37.6288,0	1/1:121:1,120:1:36:120:4268:-380.697,-32.8264,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:176:0,176:0:0:176:6297:-566.734,-52.9813,0	1/1:149:0,149:0:0:149:5322:-479.111,-44.8535,0	0/1:79:28,51:28:1008:51:1772:-135.974,0,-67.255	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:85:44,41:44:1576:41:1472:-107.189,0,-116.544	0/1:62:28,34:28:1004:34:1194:-89.0974,0,-72.012	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	1/1:59:0,59:0:0:59:2106:-189.808,-17.7608,0	0/1:79:26,53:26:936:53:1885:-146.145,0,-60.7781	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:59:0,59:0:0:59:2101:-189.358,-17.7608,0	0/1:59:19,40:19:680:40:1428:-111.057,0,-43.7684	1/1:99:0,99:0:0:99:3514:-316.469,-29.802,0	1/1:126:0,126:0:0:126:4471:-402.558,-37.9298,0	0/1:43:11,32:11:392:32:1139:-89.8379,0,-22.6758	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	.:.:.:.:.:.:.:.	1/1:68:0,68:0:0:68:2428:-218.776,-20.47,0	1/1:68:0,68:0:0:68:2428:-218.776,-20.47,0	1/1:107:0,107:0:0:107:3835:-345.345,-32.2102,0	1/1:113:0,113:0:0:113:4022:-362.167,-34.0164,0	0/1:37:16,21:16:576:21:752:-56.8681,0,-41.0369	0/1:61:25,36:25:892:36:1262:-95.5156,0,-62.2369	0/1:96:47,49:47:1692:49:1752:-129.065,0,-123.668	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	1/1:53:0,53:0:0:53:1891:-170.468,-15.9546,0	1/1:23:2,21:2:72:21:752:-61.1695,-0.0869676,0	0/1:67:20,47:20:720:47:1688:-131.993,0,-44.9598	0/1:38:20,18:20:716:18:635:-46.0378,0,-53.3286	1/1:81:1,80:1:36:80:2842:-252.417,-20.7852,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0
chr07	20027783	.	TCG	CCT,TCT	339502	PASS	AB=0.546046,0.451517;ABP=138.992,153.771;AC=140,48;AF=0.744681,0.255319;AN=188;AO=12645,3352;CIGAR=1X1M1X,2M1X;DP=16045;DPB=16046;DPRA=0,1.14571;EPP=27461.3,7281.79;EPPR=7.35324;GTI=3;LEN=3,1;MEANALT=2.04255,2.44828;MQM=59.9604,59.9284;MQMR=60;NS=94;NUMALT=2;ODDS=0.614409;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=54,54;PQR=0;PRO=0;QA=444268,119771;QR=72;RO=2;RPL=0,0;RPP=27461.3,7281.79;RPPR=3.0103;RPR=12645,3352;RUN=1,1;SAF=0,0;SAP=27461.3,7281.79;SAR=12645,3352;SRF=1;SRP=3.0103;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,16,16:0:0:16,16:565,576:-93.0326,-47.0213,-42.2048,-46.0368,0,-41.2203	1/2:303:0,172,130:0:0:172,130:6009,4628:-865.781,-376.986,-325.209,-488.788,0,-449.654	1/2:200:0,125,75:0:0:125,75:4371,2671:-573.64,-218.058,-180.43,-355.935,0,-333.358	1/2:393:0,226,167:0:0:226,167:7952,5964:-1133.76,-486.439,-418.406,-647.675,0,-597.403	1/1:120:0,119,0:0:0:119,0:4182,0:-376.31,-35.8226,0,-376.31,-35.8226,-376.31	1/1:74:0,73,0:0:0:73,0:2560,0:-230.291,-21.9752,0,-230.291,-21.9752,-230.291	1/1:211:0,211,0:0:0:211,0:7400,0:-666.059,-63.5173,0,-666.059,-63.5173,-666.059	1/1:308:0,308,0:0:0:308,0:10827,0:-974.352,-92.7172,0,-974.352,-92.7172,-974.352	1/1:102:0,102,0:0:0:102,0:3608,0:-324.928,-30.7051,0,-324.928,-30.7051,-324.928	1/2:178:0,104,73:0:0:104,73:3660,2607:-510.487,-212.543,-181.236,-297.939,0,-275.964	1/1:129:0,129,0:0:0:129,0:4563,0:-410.835,-38.8329,0,-410.835,-38.8329,-410.835	1/2:73:1,30,42:1:36:30,42:1030,1504:-203.038,-119.714,-113.621,-80.6769,0,-70.9716	1/2:91:0,46,45:0:0:46,45:1605,1602:-261.404,-130.923,-117.076,-130.834,0,-117.287	1/2:131:0,72,59:0:0:72,59:2534,2104:-378.148,-171.864,-150.19,-206.639,0,-188.878	1/2:68:0,30,38:0:0:30,38:1070,1356:-198.126,-110.901,-101.87,-87.5809,0,-76.1418	1/1:72:0,72,0:0:0:72,0:2540,0:-228.852,-21.6742,0,-228.852,-21.6742,-228.852	1/1:100:0,100,0:0:0:100,0:3519,0:-316.92,-30.103,0,-316.92,-30.103,-316.92	1/1:91:0,91,0:0:0:91,0:3197,0:-287.958,-27.3937,0,-287.958,-27.3937,-287.958	1/2:74:0,32,41:0:0:32,41:1128,1463:-210.953,-119.112,-109.479,-91.8739,0,-79.5316	1/2:493:0,257,234:0:0:257,234:9012,8396:-1418.27,-684.915,-607.551,-733.427,0,-662.986	1/1:269:0,267,0:0:0:267,0:9349,0:-841.029,-80.375,0,-841.029,-80.375,-841.029	1/1:149:0,149,0:0:0:149,0:5211,0:-469.134,-44.8535,0,-469.134,-44.8535,-469.134	1/1:62:0,59,1:0:0:59,1:2105,36:-189.412,-17.7608,0,-186.475,-14.7948,-186.174	1/1:231:0,228,1:0:0:228,1:7974,36:-717.336,-68.6348,0,-714.398,-65.6974,-714.097	1/2:103:0,51,52:0:0:51,52:1810,1856:-299.14,-151.666,-136.313,-147.83,0,-132.176	1/2:569:0,275,294:0:0:275,294:9632,10524:-1642.28,-858.561,-775.778,-784.069,0,-695.566	1/1:483:0,482,0:0:0:482,0:16892,0:-1519.61,-145.096,0,-1519.61,-145.096,-1519.61	1/1:34:0,34,0:0:0:34,0:1177,0:-106.231,-10.235,0,-106.231,-10.235,-106.231	1/2:483:0,285,197:0:0:285,197:9997,7064:-1389.68,-576.154,-490.36,-813.522,0,-754.219	1/2:250:0,162,88:0:0:162,88:5668,3144:-717.822,-256.695,-207.929,-461.481,0,-434.99	1/1:189:0,189,0:0:0:189,0:6632,0:-596.774,-56.8947,0,-596.774,-56.8947,-596.774	1/2:9:0,5,4:0:0:5,4:180,144:-26.7966,-12.1095,-10.6043,-15.0469,0,-13.8428	1/1:14:0,14,0:0:0:14,0:472,0:-42.7994,-4.21442,0,-42.7994,-4.21442,-42.7994	1/1:6:0,6,0:0:0:6,0:198,0:-18.1428,-1.80618,0,-18.1428,-1.80618,-18.1428	1/2:18:0,10,8:0:0:10,8:356,280:-52.1464,-23.1277,-20.1174,-29.3712,0,-26.9629	1/2:23:0,10,13:0:0:10,13:355,464:-67.1085,-38.1841,-35.1738,-29.2801,0,-25.3667	1/1:223:0,222,0:0:0:222,0:7863,0:-707.372,-66.8287,0,-707.372,-66.8287,-707.372	1/2:229:0,109,120:0:0:109,120:3822,4312:-663.143,-352.131,-319.319,-311.367,0,-275.243	1/2:128:0,68,60:0:0:68,60:2397,2135:-369.519,-174.356,-153.886,-195.517,0,-177.455	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/2:289:0,193,96:0:0:193,96:6837,3414:-835.52,-278.574,-220.476,-557.3,0,-528.401	1/2:53:0,24,29:0:0:24,29:841,1040:-153.423,-84.9933,-77.7686,-68.7837,0,-60.0538	1/2:358:0,216,140:0:0:216,140:7553,4995:-1021.17,-407.154,-342.132,-613.976,0,-571.831	1/2:74:0,39,35:0:0:39,35:1379,1239:-213.457,-101.278,-89.5374,-112.533,0,-101.997	1/2:86:0,39,47:0:0:39,47:1387,1672:-249.65,-136.617,-124.876,-113.389,0,-99.2401	1/1:133:0,133,0:0:0:133,0:4663,0:-419.828,-40.037,0,-419.828,-40.037,-419.828	1/1:245:0,244,0:0:0:244,0:8591,0:-772.837,-73.4513,0,-772.837,-73.4513,-772.837	1/2:284:0,148,136:0:0:148,136:5212,4850:-820.031,-395.714,-351.161,-424.672,0,-383.732	1/1:180:0,178,0:0:0:178,0:6275,0:-564.577,-53.5833,0,-564.577,-53.5833,-564.577	1/1:385:0,380,2:0:0:380,2:13441,72:-1209.14,-114.391,0,-1203.26,-108.517,-1202.66	1/1:274:0,273,0:0:0:273,0:9599,0:-863.674,-82.1812,0,-863.674,-82.1812,-863.674	1/2:8:0,7,1:0:0:7,1:252,36:-23.8592,-3.29724,-1.19003,-20.9217,0,-20.6207	1/2:287:0,167,118:0:0:167,118:5915,4223:-826.182,-344.349,-294.077,-481.809,0,-446.287	1/1:142:0,141,0:0:0:141,0:4930,0:-443.577,-42.4452,0,-443.577,-42.4452,-443.577	1/2:24:0,16,8:0:0:16,8:566,288:-69.9565,-23.8592,-19.0427,-46.4551,0,-44.0468	1/2:230:0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chr07	20027811	.	A	C	54856.3	PASS	AB=0.451644;ABP=152.537;AC=48;AF=0.255319;AN=188;AO=3338;CIGAR=1X;DP=16031;DPB=16031;DPRA=1.04325;EPP=7104.48;EPPR=26114.7;GTI=3;LEN=1;MEANALT=1.03636;MQM=59.9326;MQMR=59.9657;NS=94;NUMALT=1;ODDS=0.17296;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119373;QR=454784;RO=12688;RPL=3321;RPP=7104.48;RPPR=26114.7;RPR=17;RUN=1;SAF=0;SAP=7251.39;SAR=3338;SRF=0;SRP=27554.7;SRR=12688;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:18,16:18:648:16:559:-40.4014,0,-48.4169	0/1:296:168,128:168:6028:128:4563:-321.528,0,-453.518	0/1:200:124,76:124:4430:76:2732:-185.916,0,-338.657	0/1:396:229,167:229:8196:167:5948:-416.212,0,-618.43	0/0:119:119,0:119:4280:0:0:0,-35.8226,-385.37	0/0:73:73,0:73:2598:0:0:0,-21.9752,-234.068	0/0:213:213,0:213:7622:0:0:0,-64.1194,-686.016	0/0:305:305,0:305:10917:0:0:0,-91.8141,-982.391	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:174:103,71:103:3682:71:2536:-176.112,0,-279.201	0/0:133:133,0:133:4780:0:0:0,-40.037,-430.348	0/1:75:31,44:31:1104:44:1567:-118.744,0,-77.0934	0/1:87:45,42:45:1607:42:1507:-109.735,0,-118.46	0/1:129:73,56:73:2620:56:2000:-141.441,0,-197.214	0/1:68:29,39:29:1044:39:1400:-105.829,0,-73.8048	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:98:98,0:98:3519:0:0:0,-29.5009,-316.89	0/0:90:90,0:90:3221:0:0:0,-27.0927,-290.11	0/1:74:33,41:33:1166:41:1472:-110.5,0,-82.9694	0/1:494:258,236:258:9230:236:8420:-609.091,0,-681.96	0/0:266:266,0:266:9540:0:0:0,-80.074,-858.475	0/0:151:151,0:151:5386:0:0:0,-45.4555,-484.872	0/0:62:61,1:61:2184:1:36:0,-15.0656,-193.182	0/0:231:231,0:231:8292:0:0:0,-69.5379,-746.281	0/1:103:48,55:48:1724:55:1980:-147.468,0,-124.439	0/1:567:277,289:277:9939:289:10372:-762.648,0,-723.703	0/0:482:482,0:482:17278:0:0:0,-145.096,-1554.64	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:482:286,196:286:10268:196:7023:-487.032,0,-778.928	0/1:248:159,89:159:5700:89:3192:-212.848,0,-438.462	0/0:191:191,0:191:6840:0:0:0,-57.4967,-615.479	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:17:10,6:10:356:6:216:-14.7426,0,-27.3415	0/1:22:9,13:9:324:13:464:-35.4748,0,-22.8832	0/0:225:225,0:225:8080:0:0:0,-67.7317,-727.207	0/1:227:108,119:108:3864:119:4255:-314.795,0,-279.622	0/1:127:68,59:68:2439:59:2105:-151.487,0,-181.533	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:285:189,96:189:6780:96:3444:-224.377,0,-524.47	0/1:54:24,30:24:864:30:1060:-79.4075,0,-61.8269	0/1:352:213,139:213:7648:139:4967:-341.207,0,-582.38	0/1:75:39,36:39:1400:36:1290:-93.8265,0,-103.586	0/1:86:40,46:40:1427:46:1648:-122.72,0,-102.838	0/0:134:134,0:134:4792:0:0:0,-40.338,-431.429	0/0:242:241,0:241:8639:0:0:0,-72.5482,-777.142	0/1:284:150,134:150:5375:134:4804:-347.022,0,-398.388	0/0:180:180,0:180:6464:0:0:0,-54.1854,-581.82	0/0:385:384,1:384:13783:1:36:0,-112.298,-1236.64	0/0:276:276,0:276:9878:0:0:0,-83.0843,-888.955	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:286:170,116:170:6104:116:4168:-289.206,0,-463.357	0/0:143:143,0:143:5127:0:0:0,-43.0473,-461.571	0/1:24:17,7:17:612:7:248:-15.4395,0,-48.1887	0/1:226:138,88:138:4928:88:3111:-212.182,0,-375.636	0/1:32:17,15:17:612:15:528:-38.2184,0,-45.7805	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.821	0/0:155:155,0:155:5572:0:0:0,-46.6596,-501.601	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/0:345:344,1:344:12342:1:36:0,-100.257,-1107	0/0:524:519,5:519:18616:5:180:0,-141.188,-1658.43	0/1:119:73,46:73:2624:46:1643:-112.335,0,-200.584	0/0:165:165,0:165:5899:0:0:0,-49.6699,-531.02	0/1:246:139,107:139:4992:107:3829:-270.483,0,-375.373	0/1:219:113,106:113:4056:106:3791:-275.406,0,-299.301	0/1:61:25,36:25:900:36:1275:-96.6894,0,-62.9578	0/0:172:172,0:172:6159:0:0:0,-51.7772,-554.352	0/1:88:54,34:54:1940:34:1220:-83.6129,0,-148.386	0/1:48:26,22:26:936:22:792:-57.1562,0,-70.11	0/0:137:137,0:137:4895:0:0:0,-41.2411,-440.702	0/1:97:51,46:51:1819:46:1656:-120.128,0,-134.791	0/0:407:406,0:406:14514:0:0:0,-122.218,-1305.64	0/0:377:377,0:377:13544:0:0:0,-113.488,-1218.74	0/1:245:136,109:136:4859:109:3871:-274.83,0,-363.712	0/0:216:216,0:216:7741:0:0:0,-65.0225,-696.697	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:255:255,0:255:9132:0:0:0,-76.7626,-821.85	0/0:211:210,1:210:7514:1:36:0,-59.9191,-672.703	0/0:529:526,3:526:18875:3:108:0,-149.17,-1688.23	0/0:139:138,0:138:4948:0:0:0,-41.5421,-445.103	0/1:94:49,45:49:1756:45:1616:-117.297,0,-130.027	0/1:104:61,43:61:2188:43:1535:-107.135,0,-165.879	0/1:165:74,91:74:2656:91:3259:-243.86,0,-189.616	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.727	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/1:85:47,38:47:1684:38:1360:-97.113,0,-126.259	0/1:160:69,91:69:2476:91:3259:-245.365,0,-174.929	0/1:67:23,44:23:824:44:1580:-122.323,0,-54.3128	0/0:304:304,0:304:10885:0:0:0,-91.5131,-979.477	0/0:126:125,1:125:4475:1:36:0,-34.3315,-399.321
chr07	20063661	.	CATAAAGTAT	CATAGAGTAT,GATAGAGTT	176463	PASS	AB=0.314419,0.681405;ABP=1220.83,1166.64;AC=127,57;AF=0.690217,0.309783;AN=184;AO=3936,3475;CIGAR=4M1X5M,1X3M1X3M1D1M;DP=7454;DPB=7171.4;DPRA=14.7462,1.82827;EPP=221.978,7548.88;EPPR=3.0103;GTI=10;LEN=1,9;MEANALT=2.01124,2.34545;MQM=59.9736,48.2584;MQMR=60;NS=92;NUMALT=2;ODDS=14366.7;PAIRED=0,0;PAIREDR=0;PAO=1,632;PQA=36,21949;PQR=36;PRO=1;QA=140515,122751;QR=71;RO=2;RPL=3936,3475;RPP=8549.93,7548.88;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=1653,0;SAP=221.978,7548.88;SAR=2283,3475;SRF=1;SRP=3.0103;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	2/2:23:0,1,22:0:0:1,22:36,787:-70.2732,-67.3354,-67.0344,-6.62266,-3.68001,0	1/2:132:0,19,113:0:0:19,113:680,3989:-377.494,-322.041,-316.321,-55.4503,0,-21.4339	2/2:99:0,9,90:0:0:9,90:324,3192:-284.111,-257.673,-254.964,-27.0927,-0.655001,0	1/2:216:0,27,189:0:0:27,189:968,6710:-621.836,-542.884,-534.756,-79.3096,0,-22.4149	1/1:33:0,32,1:0:0:32,1:1140,36:-102.551,-9.63296,0,-99.642,-6.72543,-99.3409	1/1:25:0,25,0:0:0:25,0:888,0:-79.8902,-7.52575,0,-79.8902,-7.52575,-79.8902	1/1:38:0,36,0:0:0:36,0:1288,0:-115.91,-10.8371,0,-115.91,-10.8371,-115.91	1/1:22:0,22,0:0:0:22,0:788,0:-70.8951,-6.62266,0,-70.8951,-6.62266,-70.8951	1/1:23:0,23,0:0:0:23,0:820,0:-73.7709,-6.92369,0,-73.7709,-6.92369,-73.7709	1/2:116:0,14,102:0:0:14,102:500,3610:-332.656,-291.891,-287.676,-40.7621,0,-10.0571	1/1:77:0,77,0:0:0:77,0:2744,0:-247.098,-23.1793,0,-247.098,-23.1793,-247.098	1/2:79:0,39,40:0:0:39,40:1396,1417:-228.384,-114.54,-102.8,-113.846,0,-101.804	1/2:84:0,35,49:0:0:35,49:1260,1741:-243.151,-140.339,-129.803,-102.815,0,-88.0649	1/2:94:1,54,39:1:36:54,39:1940,1377:-265.838,-107.956,-94.6384,-155.303,0,-146.5	1/2:112:0,54,57:0:0:54,57:1932,2020:-320.999,-163.451,-147.196,-157.618,0,-140.46	1/1:134:0,133,0:0:0:133,0:4759,0:-428.129,-40.037,0,-428.129,-40.037,-428.129	1/1:69:0,69,0:0:0:69,0:2471,0:-222.286,-20.7711,0,-222.286,-20.7711,-222.286	1/1:62:0,62,0:0:0:62,0:2224,0:-200.074,-18.6639,0,-200.074,-18.6639,-200.074	1/2:22:0,11,11:0:0:11,11:396,393:-63.8287,-31.5154,-28.2041,-32.313,0,-29.0017	1/2:227:0,46,180:0:0:46,180:1625,6374:-647.317,-514.98,-501.133,-132.33,0,-78.1446	1/1:54:0,53,0:0:0:53,0:1876,0:-168.869,-15.9546,0,-168.869,-15.9546,-168.869	1/1:19:0,19,0:0:0:19,0:676,0:-61.168,-5.71957,0,-61.168,-5.71957,-61.168	1/1:40:0,38,1:0:0:38,1:1352,36:-121.623,-11.4391,0,-118.703,-8.51928,-118.402	1/1:42:0,42,0:0:0:42,0:1500,0:-135.294,-12.6433,0,-135.294,-12.6433,-135.294	1/2:110:0,13,97:0:0:13,97:451,3425:-312.139,-275.479,-271.566,-36.8517,0,-7.65175	1/2:387:0,55,330:0:0:55,330:1976,11639:-1104.36,-943.158,-926.601,-161.199,0,-61.8592	1/1:98:0,98,0:0:0:98,0:3485,0:-313.52,-29.5009,0,-313.52,-29.5009,-313.52	1/1:59:0,59,0:0:0:59,0:2116,0:-190.368,-17.7608,0,-190.368,-17.7608,-190.368	1/2:205:0,35,170:0:0:35,170:1229,6051:-591.006,-490.983,-480.447,-100.025,0,-48.8499	2/2:154:0,10,144:0:0:10,144:360,5077:-451.82,-422.445,-419.434,-43.3483,-13.6143,0	1/1:53:0,53,0:0:0:53,0:1900,0:-170.918,-15.9546,0,-170.918,-15.9546,-170.918	1/2:6:0,2,4:0:0:2,4:72,141:-17.6089,-11.7306,-11.1285,-6.23466,0,-5.03054	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	.:.:.:.:.:.:.:.	2/2:9:0,0,9:0:0:0,9:0,315:-28.1727,-28.1727,-28.1727,-2.70927,-2.70927,0	2/2:5:0,0,5:0:0:0,5:0,176:-15.7619,-15.7619,-15.7619,-1.50515,-1.50515,0	1/1:276:0,272,1:0:0:272,1:9703,36:-872.889,-81.8802,0,-869.96,-78.942,-869.659	2/2:171:0,7,163:0:0:7,163:252,5744:-508.964,-488.402,-486.295,-49.0679,-28.4184,0	1/2:73:0,18,53:0:0:18,53:648,1874:-204.257,-151.381,-145.962,-52.8871,0,-36.9325	1/2:11:0,6,3:0:0:6,3:197,108:-24.6507,-8.74343,-6.93725,-15.9157,0,-15.0127	1/2:171:0,36,135:0:0:36,135:1292,4777:-490.316,-384.927,-374.09,-105.747,0,-65.1076	1/2:40:0,22,18:0:0:22,18:792,648:-117.009,-52.3831,-45.7605,-64.9826,0,-59.5641	1/2:159:0,38,121:0:0:38,121:1341,4261:-452.744,-343.547,-332.107,-109.549,0,-73.1243	1/2:114:0,53,59:0:0:53,59:1889,2108:-324.732,-170.755,-154.8,-154.026,0,-136.265	1/2:81:0,42,39:0:0:42,39:1482,1391:-233.052,-112.375,-99.732,-121.03,0,-109.29	1/1:51:0,50,0:0:0:50,0:1791,0:-161.167,-15.0515,0,-161.167,-15.0515,-161.167	1/1:13:0,13,0:0:0:13,0:464,0:-41.7402,-3.91339,0,-41.7402,-3.91339,-41.7402	1/2:193:0,41,152:0:0:41,152:1464,5327:-550.019,-430.66,-418.317,-119.714,0,-73.9573	1/1:40:0,40,0:0:0:40,0:1428,0:-128.817,-12.0412,0,-128.817,-12.0412,-128.817	1/1:66:0,66,0:0:0:66,0:2368,0:-213.235,-19.868,0,-213.235,-19.868,-213.235	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	2/2:3:0,0,3:0:0:0,3:0,107:-9.78639,-9.78639,-9.78639,-0.90309,-0.90309,0	2/2:107:0,7,100:0:0:7,100:252,3533:-313.903,-293.341,-291.234,-30.103,-9.54108,0	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	.:.:.:.:.:.:.:.	1/2:77:0,27,50:0:0:27,50:964,1751:-219.826,-141.231,-133.103,-78.5893,0,-63.5378	1/2:27:0,6,21:0:0:6,21:216,730:-76.6468,-59.0188,-57.2126,-17.9843,0,-11.6627	1/2:6:0,1,5:0:0:1,5:36,176:-17.2135,-14.2732,-13.9722,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chr07	20109569	.	T	C	18630.6	PASS	AB=0.412646;ABP=144.516;AC=39;AF=0.207447;AN=188;AO=891;CIGAR=1X;DP=4570;DPB=4570;DPRA=1.19903;EPP=12.0788;EPPR=200.881;GTI=0;LEN=1;MEANALT=1;MQM=59.9327;MQMR=59.9796;NS=94;NUMALT=1;ODDS=5.65123;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31727;QR=131267;RO=3679;RPL=1;RPP=1929.12;RPPR=7922.52;RPR=890;RUN=1;SAF=477;SAP=12.6832;SAR=414;SRF=1558;SRP=190.096;SRR=2121;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:16,15:16:568:15:531:-38.79,0,-42.1199	0/1:36:23,13:23:805:13:459:-30.807,0,-61.9304	0/1:27:15,12:15:532:12:423:-30.2773,0,-40.0853	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:27:11,16:11:380:16:572:-43.6856,0,-26.4042	0/0:196:196,0:196:7002:0:0:0,-59.0019,-630.244	0/1:77:47,30:47:1688:30:1076:-73.9735,0,-129.028	0/1:83:36,47:36:1292:47:1666:-125.24,0,-91.5983	0/1:70:39,31:39:1396:31:1099:-78.126,0,-104.867	0/1:79:38,41:38:1368:41:1464:-108.275,0,-99.6395	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:85:85,0:85:3034:0:0:0,-25.5875,-273.289	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/1:49:34,15:34:1216:15:532:-33.4626,0,-94.9961	0/1:32:13,19:13:449:19:676:-51.535,0,-31.1045	0/0:47:45,2:45:1620:2:72:0,-7.31169,-139.253	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8116	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:24:10,14:10:360:14:491:-37.2964,0,-25.5196	0/1:60:29,31:29:1028:31:1099:-81.1577,0,-74.7712	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.862	0/1:35:15,20:15:536:20:711:-53.7796,0,-38.0388	0/1:17:9,8:9:324:8:275:-19.966,0,-24.3883	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.7455	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:36:36,0:36:1268:0:0:0,-10.8371,-114.412	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/0:178:178,0:178:6367:0:0:0,-53.5833,-573.12	0/1:12:6,6:6:201:6:212:-15.8124,0,-14.8047	0/1:124:100,24:100:3576:24:860:-40.3941,0,-284.72	0/0:20:19,1:19:676:1:36:0,-2.42232,-57.5697	0/1:30:11,19:11:387:19:684:-52.8579,0,-26.135	0/1:79:67,12:67:2408:12:428:-15.0774,0,-193.195	0/1:37:18,19:18:640:19:676:-50.0299,0,-46.7912	0/1:68:34,34:34:1220:34:1220:-89.6368,0,-89.6368	0/1:66:35,31:35:1232:31:1103:-79.7118,0,-91.3133	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:35:16,19:16:576:19:680:-50.9931,0,-41.6389	0/0:28:28,0:28:972:0:0:0,-8.42884,-87.7892	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:36:12,24:12:428:24:841:-65.1693,0,-28.0217	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:19:18,1:18:640:1:36:0,-2.12129,-54.331	0/1:26:15,11:15:532:11:388:-27.4306,0,-40.3863	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:23:22,1:22:788:1:36:0,-3.32541,-67.6465	0/0:104:103,1:103:3671:1:32:0,-28.1078,-327.395	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:22:8,14:8:288:14:500:-38.7053,0,-19.6447	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:42:16,26:16:572:26:932:-71.5556,0,-39.1702	0/1:24:8,16:8:288:16:572:-44.5887,0,-19.0427	0/1:82:72,10:72:2579:10:351:-7.24222,0,-207.674	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:95:47,48:47:1684:48:1720:-126.488,0,-123.059	0/0:47:43,4:43:1540:4:144:0,-0.834792,-125.579	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:26:12,14:12:417:14:472:-34.9732,0,-30.0334	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7887	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.871	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:97:97,0:97:3435:0:0:0,-29.1999,-309.363	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/1:59:23,36:23:815:36:1288:-98.4628,0,-55.91	0/1:87:53,34:53:1891:34:1211:-83.1002,0,-144.278	0/1:113:56,57:56:2000:57:2032:-148.946,0,-146.257	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:142:118,24:118:4196:24:855:-34.5239,0,-335.075	0/1:172:144,28:144:5123:28:1008:-39.2592,0,-409.436	0/1:60:20,40:20:720:40:1436:-111.476,0,-47.067	0/0:95:95,0:95:3363:0:0:0,-28.5978,-302.884	0/0:124:124,0:124:4443:0:0:0,-37.3277,-400.04
chr07	20110511	.	A	C	102853	PASS	AB=0.479417;ABP=14.3632;AC=138;AF=0.741935;AN=186;AO=4940;CIGAR=1X;DP=6555;DPB=6555;DPRA=35.6141;EPP=10721.4;EPPR=3477.41;GTI=2;LEN=1;MEANALT=1.03261;MQM=59.9816;MQMR=59.9795;NS=93;NUMALT=1;ODDS=0.174594;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174764;QR=57685;RO=1612;RPL=4939;RPP=10721.4;RPPR=3477.41;RPR=1;RUN=1;SAF=4940;SAP=10730.1;SAR=0;SRF=1612;SRP=3503.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:14,13:14:500:13:464:-33.9697,0,-37.2084	0/1:46:22,24:22:792:24:856:-63.5137,0,-57.7583	0/1:165:99,66:99:3552:66:2331:-160.379,0,-270.218	0/1:146:80,66:80:2880:66:2350:-167.808,0,-215.485	1/1:10:0,10:0:0:10:341:-31.0178,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:65:0,65:0:0:65:2323:-209.33,-19.567,0	1/1:122:0,122:0:0:122:4328:-389.691,-36.7257,0	1/1:52:0,52:0:0:52:1832:-165.159,-15.6536,0	0/1:45:20,25:20:712:25:881:-66.0595,0,-50.8603	1/1:36:0,36:0:0:36:1270:-114.601,-10.8371,0	0/1:97:51,46:51:1819:46:1623:-117.158,0,-134.791	0/1:89:47,41:47:1680:41:1394:-98.8984,0,-124.637	0/1:42:21,21:21:752:21:744:-54.6411,0,-55.363	0/1:79:40,39:40:1431:39:1377:-100.445,0,-105.305	1/1:62:0,62:0:0:62:2184:-196.824,-18.6639,0	1/1:42:0,42:0:0:42:1487:-134.123,-12.6433,0	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:68:27,41:27:968:41:1456:-110.865,0,-66.9673	1/1:135:1,134:1:36:134:4725:-421.812,-37.0408,0	1/1:140:0,140:0:0:140:4962:-446.731,-42.1442,0	1/1:93:0,93:0:0:93:3283:-295.684,-27.9958,0	1/1:49:0,49:0:0:49:1736:-156.523,-14.7505,0	0/1:59:24,35:24:852:35:1232:-93.4215,0,-59.2396	0/1:186:97,89:97:3469:89:3147:-227.463,0,-256.429	1/1:201:1,200:1:36:200:7078:-633.486,-56.9088,0	1/1:26:0,26:0:0:26:927:-83.7474,-7.82678,0	0/1:221:95,126:95:3400:126:4486:-337.381,0,-239.687	0/1:79:38,41:38:1364:41:1472:-108.995,0,-99.2793	1/1:76:0,76:0:0:76:2653:-239.01,-22.8783,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:14:0,14:0:0:14:489:-44.3398,-4.21442,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:6:1,5:1:36:5:171:-13.9193,0,-1.79209	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:199:0,199:0:0:199:6988:-628.988,-59.905,0	0/1:60:35,25:35:1260:25:871:-60.6395,0,-95.6437	0/1:49:28,21:28:996:21:738:-51.9909,0,-75.2044	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:85:38,47:38:1364:47:1684:-126.259,0,-97.4732	0/1:36:15,20:15:536:20:681:-50.7087,0,-37.634	0/1:63:39,24:39:1396:24:823:-55.4172,0,-106.974	0/1:53:33,20:33:1180:20:696:-47.0051,0,-90.5535	0/1:47:23,24:23:815:24:843:-62.0396,0,-59.5224	1/1:63:0,63:0:0:63:2213:-199.433,-18.9649,0	1/1:62:1,61:1:36:61:2184:-193.227,-15.0656,0	0/1:106:55,51:55:1976:51:1812:-131.452,0,-146.119	1/1:77:0,77:0:0:77:2738:-246.662,-23.1793,0	1/1:104:0,104:0:0:104:3725:-335.449,-31.3071,0	1/1:90:0,90:0:0:90:3179:-286.333,-27.0927,0	.:.:.:.:.:.:.:.	0/1:91:40,51:40:1421:51:1824:-137.047,0,-100.792	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:115:63,52:63:2255:52:1852:-132.341,0,-168.594	0/1:37:18,19:18:644:19:656:-48.2213,0,-47.1525	0/1:2:1,1:1:36:1:27:-2.09772,0,-2.99621	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:38:0,38:0:0:38:1346:-121.439,-11.4391,0	1/1:91:0,91:0:0:91:3206:-288.763,-27.3937,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:149:0,149:0:0:149:5282:-475.517,-44.8535,0	1/1:122:1,121:1:36:121:4321:-385.467,-33.1274,0	0/1:44:21,23:21:752:23:801:-59.1614,0,-54.7609	1/1:63:0,63:0:0:63:2202:-198.44,-18.9649,0	0/1:130:63,67:63:2256:67:2388:-176.041,0,-164.169	0/1:111:70,41:70:2480:41:1441:-96.5695,0,-190.038	0/1:49:32,17:32:1152:17:604:-39.9401,0,-89.2397	1/1:20:0,20:0:0:20:705:-63.7737,-6.0206,0	0/1:35:22,13:22:767:13:468:-31.9236,0,-58.8134	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	1/1:105:0,105:0:0:105:3683:-331.674,-31.6082,0	0/1:62:32,30:32:1140:30:1054:-76.5053,0,-84.2453	1/1:71:0,71:0:0:71:2509:-226.061,-21.3731,0	1/1:176:0,176:0:0:176:6246:-562.238,-52.9813,0	0/1:39:9,30:9:324:30:1068:-84.6913,0,-17.7657	1/1:83:0,83:0:0:83:2949:-265.643,-24.9855,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:68:0,68:0:0:68:2413:-217.425,-20.47,0	1/1:155:0,154:0:0:154:5434:-488.833,-46.3586,0	1/1:71:0,71:0:0:71:2539:-228.761,-21.3731,0	0/1:82:47,35:47:1688:35:1230:-86.318,0,-127.522	0/1:50:27,23:27:960:23:822:-59.2512,0,-71.6648	0/1:130:70,60:70:2520:60:2109:-150.941,0,-187.917	1/1:22:1,21:1:36:21:744:-63.6861,-3.02439,0	1/1:72:0,72:0:0:72:2509:-226.06,-21.6742,0	1/1:69:0,69:0:0:69:2430:-218.955,-20.7711,0	0/1:42:25,17:25:900:17:608:-42.4088,0,-68.6778	0/1:67:33,34:33:1180:34:1214:-89.3968,0,-86.339	0/1:77:55,22:55:1972:22:769:-46.35,0,-154.576	1/1:105:0,105:0:0:105:3731:-335.993,-31.6082,0	1/1:105:1,104:1:36:104:3668:-326.688,-28.0099,0
chr07	20241123	.	G	A	35843.8	PASS	AB=0.548113;ABP=78.6505;AC=50;AF=0.268817;AN=186;AO=2085;CIGAR=1X;DP=7631;DPB=7631;DPRA=1.03777;EPP=4530.53;EPPR=12028.6;GTI=0;LEN=1;MEANALT=1.09434;MQM=59.977;MQMR=59.9892;NS=93;NUMALT=1;ODDS=1.45563;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74519;QR=197966;RO=5538;RPL=2085;RPP=4530.53;RPPR=12028.6;RPR=0;RUN=1;SAF=0;SAP=4530.53;SAR=2085;SRF=0;SRP=12028.6;SRR=5538;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:87:39,48:39:1400:48:1716:-128.528,0,-100.11	0/1:80:35,45:35:1252:45:1604:-120.568,0,-88.9027	0/1:98:38,60:38:1340:60:2144:-163.727,0,-91.3991	0/1:182:99,83:99:3532:83:2960:-211.847,0,-263.303	0/0:83:80,3:80:2852:3:108:0,-14.9103,-246.843	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/0:246:246,0:246:8784:0:0:0,-74.0534,-790.552	0/1:64:32,31:32:1148:31:1100:-79.9857,0,-84.3052	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:99:52,47:52:1851:47:1684:-122.045,0,-137.067	0/1:97:45,52:45:1616:52:1864:-138.84,0,-116.53	0/1:112:52,60:52:1872:60:2156:-160.592,0,-135.044	0/1:82:35,47:35:1252:47:1688:-127.522,0,-88.3006	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:34:15,19:15:528:19:665:-49.9378,0,-37.6163	0/1:38:20,18:20:708:18:648:-47.2127,0,-52.6065	0/0:147:147,0:147:5280:0:0:0,-44.2514,-475.334	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:174:169,5:169:6044:5:180:0,-35.8272,-527.512	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:45:16,29:16:568:29:1040:-80.368,0,-37.9055	0/1:234:91,142:91:3260:142:5069:-385.855,0,-223.121	0/0:89:88,0:88:3160:0:0:0,-26.4906,-284.264	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:155:72,83:72:2577:83:2965:-220.423,0,-185.518	0/1:110:43,67:43:1548:67:2412:-184.218,0,-106.5	0/0:93:92,1:92:3312:1:36:0,-24.3975,-294.699	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:13:9,4:9:324:4:144:-9.38614,0,-25.5925	0/0:202:202,0:202:7232:0:0:0,-60.8081,-650.878	0/1:43:16,27:16:560:27:960:-73.772,0,-37.7845	0/1:49:29,20:29:1027:20:720:-50.3783,0,-77.9917	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:114:56,58:56:1996:58:2080:-153.152,0,-145.597	0/1:39:11,28:11:392:28:1004:-78.9357,0,-23.8799	0/1:169:91,78:91:3240:78:2794:-200.82,0,-240.949	0/1:78:37,41:37:1328:41:1472:-109.291,0,-96.3419	0/1:72:31,41:31:1092:41:1464:-110.382,0,-76.9145	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/1:127:61,66:61:2180:66:2356:-174.068,0,-158.235	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:100:39,61:39:1404:61:2192:-167.442,0,-96.5563	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:124:60,63:60:2144:63:2237:-164.206,0,-155.841	0/1:73:45,28:45:1604:28:996:-67.9797,0,-122.675	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:74:73,1:73:2628:1:36:0,-18.6779,-233.168	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:108:108,0:108:3841:0:0:0,-32.5112,-345.887	0/0:141:135,6:135:4820:6:208:0,-23.3861,-414.898	0/1:45:15,30:15:540:30:1060:-82.1649,0,-35.3902	0/0:61:60,0:60:2121:0:0:0,-18.0618,-190.837	0/1:162:84,78:84:3012:78:2796:-203.113,0,-222.544	0/1:111:36,75:36:1284:75:2665:-206.681,0,-82.4445	0/1:51:23,28:23:824:28:1008:-75.6838,0,-59.1308	0/0:59:58,0:58:2057:0:0:0,-17.4597,-185.04	0/1:50:17,33:17:604:33:1188:-92.1771,0,-39.6391	0/1:17:9,8:9:316:8:284:-20.7858,0,-23.6613	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:83:34,48:34:1224:48:1720:-130.041,0,-85.4228	0/0:289:289,0:289:10305:0:0:0,-86.9977,-927.374	0/0:144:144,0:144:5137:0:0:0,-43.3483,-462.472	0/1:177:69,108:69:2468:108:3860:-294.313,0,-169.092	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:85:84,1:84:3012:1:36:0,-21.9893,-267.713	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/0:160:160,0:160:5736:0:0:0,-48.1648,-516.351	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:69:31,38:31:1112:38:1356:-101.569,0,-79.6203	0/1:67:31,36:31:1108:36:1284:-95.6944,0,-79.862	0/1:143:73,69:73:2604:69:2438:-176.568,0,-191.503	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.295	0/1:53:28,25:28:1004:25:885:-64.0119,0,-74.7213	0/1:109:49,60:49:1752:60:2145:-160.503,0,-125.152	0/1:85:17,68:17:604:68:2444:-194.625,0,-29.1031	0/0:125:125,0:125:4437:0:0:0,-37.6287,-399.503	0/0:155:155,0:155:5537:0:0:0,-46.6596,-498.325
chr07	20332946	.	T	C	33463	PASS	AB=0.487186;ABP=8.96508;AC=48;AF=0.255319;AN=188;AO=2057;CIGAR=1X;DP=8520;DPB=8520;DPRA=1.02899;EPP=4469.73;EPPR=14035.1;GTI=1;LEN=1;MEANALT=1.01613;MQM=59.9781;MQMR=59.9418;NS=94;NUMALT=1;ODDS=2.28843;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72951;QR=230416;RO=6462;RPL=2056;RPP=4461.05;RPPR=13870.5;RPR=1;RUN=1;SAF=2056;SAP=4461.05;SAR=1;SRF=6443;SRP=13870.5;SRR=19;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:464:14:504:-37.5703,0,-33.9697	0/1:82:36,46:36:1292:46:1634:-122.663,0,-91.8993	0/1:176:104,72:104:3723:72:2546:-176.408,0,-282.289	0/1:203:101,102:101:3613:102:3604:-263.456,0,-263.328	0/0:18:16,2:16:572:2:57:0,-0.00523009,-46.4001	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/0:66:66,0:66:2341:0:0:0,-19.868,-210.948	0/0:150:150,0:150:5336:0:0:0,-45.1545,-480.375	0/0:89:89,0:89:3130:0:0:0,-26.7917,-281.926	0/1:74:42,32:42:1500:32:1108:-77.7455,0,-113.018	0/0:61:61,0:61:2166:0:0:0,-18.3628,-195.206	0/1:99:42,57:42:1495:57:2021:-152.361,0,-105.042	0/1:83:30,53:30:1076:53:1877:-144.222,0,-72.1674	0/1:108:51,57:51:1816:57:2040:-151.361,0,-131.21	0/1:72:26,46:26:924:46:1648:-126.934,0,-61.8035	0/0:85:85,0:85:3022:0:0:0,-25.5875,-272.211	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:43:43,0:43:1516:0:0:0,-12.9443,-136.73	0/1:44:23,21:23:803:21:756:-55.1219,0,-59.343	0/1:84:37,47:37:1319:47:1651:-123.587,0,-93.7246	0/0:102:102,0:102:3647:0:0:0,-30.7051,-328.434	0/0:75:74,1:74:2641:1:36:0,-18.979,-234.337	0/0:91:91,0:91:3250:0:0:0,-27.3937,-292.72	0/0:55:53,2:53:1887:2:72:0,-9.71993,-162.695	0/1:37:18,19:18:644:19:680:-50.3911,0,-47.1525	0/1:262:131,131:131:4699:131:4630:-337.938,0,-344.199	0/0:172:171,1:171:6116:1:36:0,-48.1789,-546.811	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.0689	0/1:296:161,135:161:5775:135:4805:-343.502,0,-430.758	0/1:150:98,52:98:3466:52:1814:-118.383,0,-266.997	0/0:95:94,1:94:3358:1:36:0,-24.9996,-298.837	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:184:184,0:184:6520:0:0:0,-55.3895,-586.887	0/1:126:68,58:68:2436:58:2063:-148.011,0,-181.566	0/1:57:27,30:27:968:30:1062:-78.7136,0,-70.2787	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:101:50,51:50:1783:51:1832:-134.757,0,-130.348	0/1:47:19,28:19:675:28:1004:-76.5275,0,-46.9285	0/1:105:74,31:74:2639:31:1108:-68.4228,0,-206.149	0/1:44:25,19:25:900:19:680:-48.2838,0,-68.0757	0/1:50:27,23:27:972:23:824:-59.4318,0,-72.7464	0/0:74:74,0:74:2625:0:0:0,-22.2762,-236.497	0/0:85:85,0:85:3027:0:0:0,-25.5875,-272.661	0/1:193:115,78:115:4107:78:2723:-187.211,0,-311.717	0/0:95:94,1:94:3369:1:36:0,-24.9996,-299.739	0/0:148:148,0:148:5304:0:0:0,-44.5524,-477.408	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.618	0/1:26:13,13:13:444:13:468:-34.6329,0,-32.3705	0/1:118:75,43:75:2679:43:1531:-102.561,0,-205.833	0/0:104:103,1:103:3675:1:36:0,-27.7088,-327.355	0/1:16:9,7:9:315:7:228:-16.0211,0,-23.8707	0/1:153:86,67:86:3063:67:2362:-166.778,0,-229.842	0/1:27:14,13:14:496:13:468:-34.3318,0,-36.8465	0/1:19:11,8:11:396:8:279:-19.728,0,-30.2632	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:103:102,1:102:3644:1:36:0,-27.4078,-324.562	0/0:85:84,1:84:2999:1:36:0,-21.9893,-266.543	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:204:202,2:202:7240:2:68:0,-54.9524,-644.705	0/0:206:204,2:204:7284:2:72:0,-55.1755,-648.775	0/1:141:76,65:76:2713:65:2316:-166.253,0,-201.967	0/0:99:99,0:99:3522:0:0:0,-29.802,-315.915	0/1:84:42,42:42:1489:42:1493:-109.376,0,-108.93	0/1:150:38,112:38:1356:112:4011:-316.024,0,-77.186	0/1:56:25,31:25:900:31:1104:-82.813,0,-64.4633	0/0:70:65,5:65:2291:5:180:0,-4.52003,-189.897	0/1:43:24,19:24:864:19:665:-47.2285,0,-65.1383	0/1:23:15,8:15:536:8:284:-18.9797,0,-41.6511	0/0:120:120,0:120:4285:0:0:0,-36.1236,-385.827	0/1:74:47,26:47:1688:26:928:-61.638,0,-130.009	0/0:174:174,0:174:6166:0:0:0,-52.3792,-555.04	0/0:231:231,0:231:8237:0:0:0,-69.5379,-741.339	0/1:93:57,36:57:2044:36:1265:-86.1548,0,-156.236	0/0:213:213,0:213:7604:0:0:0,-64.1194,-684.398	0/0:26:26,0:26:909:0:0:0,-7.82678,-82.1234	0/0:111:111,0:111:3967:0:0:0,-33.4143,-357.221	0/0:154:153,1:153:5458:1:36:0,-42.7603,-487.748	0/0:129:129,0:129:4599:0:0:0,-38.8329,-413.99	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.581	0/1:107:54,53:54:1927:53:1886:-137.807,0,-141.496	0/1:52:26,26:26:915:26:913:-66.8304,0,-67.012	0/1:105:53,52:53:1878:52:1830:-133.371,0,-137.689	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:80:80,0:80:2829:0:0:0,-24.0824,-254.849	0/1:80:38,42:38:1355:42:1499:-111.121,0,-98.1673	0/1:154:69,85:69:2471:85:3010:-224.771,0,-176.025	0/1:82:22,60:22:792:60:2124:-166.742,0,-46.9212	0/0:63:61,2:61:2152:2:72:0,-12.1282,-187.109	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.786
chr07	20355879	.	TT	CC,CT	107789	PASS	AB=0.48563,0.511412;ABP=7.25412,5.68655;AC=139,47;AF=0.747312,0.252688;AN=186;AO=3835,1215;CIGAR=2X,1X1M;DP=5063;DPB=5064;DPRA=0,0.891245;EPP=8330.61,2641.35;EPPR=7.35324;GTI=1;LEN=2,1;MEANALT=1.64516,2.14286;MQM=59.9405,59.9572;MQMR=60;NS=93;NUMALT=2;ODDS=0.600348;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=68,0;PQR=0;PRO=0;QA=135596,43463;QR=72;RO=2;RPL=0,0;RPP=8330.61,2641.35;RPPR=7.35324;RPR=3835,1215;RUN=1,1;SAF=3835,1215;SAP=8330.61,2641.35;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:23:0,12,11:0:0:12,11:424,392:-66.8375,-32.3087,-28.6964,-34.8835,0,-31.5722	1/2:78:0,47,31:0:0:47,31:1615,1108:-221.831,-90.6991,-76.5507,-131.484,0,-122.152	1/2:54:0,33,21:0:0:33,21:1161,756:-156.551,-62.0456,-52.1116,-94.8622,0,-88.5406	1/2:107:0,55,51:0:0:55,51:1957,1828:-308.579,-149.089,-132.532,-159.488,0,-144.135	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:40:0,40,0:0:0:40,0:1408,0:-127.015,-12.0412,0,-127.015,-12.0412,-127.015	1/1:71:0,71,0:0:0:71,0:2522,0:-227.229,-21.3731,0,-227.229,-21.3731,-227.229	1/1:45:0,45,0:0:0:45,0:1579,0:-142.399,-13.5464,0,-142.399,-13.5464,-142.399	1/2:60:0,27,33:0:0:27,33:951,1184:-174.353,-96.932,-88.8042,-77.7759,0,-67.8419	1/1:34:0,34,0:0:0:34,0:1181,0:-106.591,-10.235,0,-106.591,-10.235,-106.591	1/2:70:0,42,28:0:0:42,28:1479,1008:-203.011,-82.6075,-69.9643,-120.76,0,-112.331	1/2:57:0,28,29:0:0:28,29:973,1031:-163.473,-84.3727,-75.9439,-79.4512,0,-70.7214	1/2:28:0,13,15:0:0:13,15:453,532:-80.5338,-43.6976,-39.7842,-37.1873,0,-32.6719	1/2:54:1,27,26:1:36:27,26:946,936:-150.105,-73.4354,-68.245,-74.0282,0,-69.1392	1/1:41:0,41,0:0:0:41,0:1440,0:-129.894,-12.3422,0,-129.894,-12.3422,-129.894	1/1:20:0,20,0:0:0:20,0:705,0:-63.7739,-6.0206,0,-63.7739,-6.0206,-63.7739	1/1:25:0,25,0:0:0:25,0:881,0:-79.6071,-7.52575,0,-79.6071,-7.52575,-79.6071	1/2:13:0,7,6:0:0:7,6:237,212:-36.8252,-17.6186,-15.5114,-19.5529,0,-17.7468	1/2:109:0,50,59:0:0:50,59:1765,2108:-315.955,-172.228,-157.177,-144.081,0,-126.321	1/1:75:0,75,0:0:0:75,0:2688,0:-242.161,-22.5773,0,-242.161,-22.5773,-242.161	1/1:38:0,38,0:0:0:38,0:1360,0:-122.701,-11.4391,0,-122.701,-11.4391,-122.701	1/1:59:0,59,0:0:0:59,0:2076,0:-187.109,-17.7608,0,-187.109,-17.7608,-187.109	1/1:40:0,40,0:0:0:40,0:1419,0:-128.007,-12.0412,0,-128.007,-12.0412,-128.007	1/2:38:0,18,20:0:0:18,20:629,708:-109.19,-58.025,-52.6065,-51.5165,0,-45.4959	1/2:123:0,54,69:0:0:54,69:1917,2472:-357.967,-201.963,-185.707,-156.361,0,-135.59	1/1:201:0,201,0:0:0:201,0:7112,0:-639.826,-60.507,0,-639.826,-60.507,-639.826	1/1:19:0,19,0:0:0:19,0:648,0:-58.637,-5.71957,0,-58.637,-5.71957,-58.637	1/2:107:0,53,54:0:0:53,54:1864,1932:-309.527,-157.872,-141.918,-152.009,0,-135.754	1/2:128:0,62,64:0:0:62,64:2173,2284:-362.587,-186.259,-167.595,-176.383,0,-157.117	1/1:57:0,57,0:0:0:57,0:2009,0:-180.851,-17.1587,0,-180.851,-17.1587,-180.851	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/1:18:0,18,0:0:0:18,0:646,0:-58.4713,-5.41854,0,-58.4713,-5.41854,-58.4713	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:7:0,2,5:0:0:2,5:72,176:-20.557,-14.6799,-14.0778,-6.23466,0,-4.72951	1/2:14:0,10,4:0:0:10,4:358,144:-41.2995,-12.1095,-9.0992,-29.5492,0,-28.3451	1/1:132:0,132,0:0:0:132,0:4665,0:-419.908,-39.736,0,-419.908,-39.736,-419.908	1/2:56:0,29,27:0:0:29,27:1044,964:-164.136,-78.949,-70.2191,-85.5449,0,-77.4171	1/2:30:0,19,11:0:0:19,11:682,392:-87.9419,-32.3087,-26.5892,-55.9903,0,-52.679	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:122:0,66,55:0:0:66,55:2338,1960:-350.214,-159.759,-139.891,-190.451,0,-173.894	1/2:21:0,9,12:0:0:9,12:324,432:-62.0456,-35.6088,-32.8996,-26.7966,0,-23.1842	1/2:48:0,26,22:0:0:26,22:919,792:-139.786,-64.983,-57.1562,-75.1597,0,-68.537	1/2:36:0,19,16:0:0:19,16:665,576:-101.204,-47.1021,-41.3825,-54.199,0,-49.3825	1/2:39:0,19,20:0:0:19,20:684,712:-114.199,-58.3861,-52.6665,-56.1708,0,-50.1502	1/1:97:0,96,0:0:0:96,0:3403,0:-306.125,-28.8989,0,-306.125,-28.8989,-306.125	1/1:82:0,81,0:0:0:81,0:2850,0:-256.379,-24.3834,0,-256.379,-24.3834,-256.379	1/2:76:0,27,49:0:0:27,49:959,1756:-221.715,-143.574,-135.446,-78.4973,0,-63.7468	1/1:57:0,57,0:0:0:57,0:2023,0:-182.343,-17.1587,0,-182.343,-17.1587,-182.343	1/1:61:0,61,0:0:0:61,0:2134,0:-192.324,-18.3628,0,-192.324,-18.3628,-192.324	1/1:96:0,96,0:0:0:96,0:3406,0:-306.756,-28.8989,0,-306.756,-28.8989,-306.756	1/2:13:0,6,7:0:0:6,7:214,252:-38.3653,-20.9217,-19.1156,-17.8016,0,-15.6944	1/2:92:0,47,45:0:0:47,45:1652,1612:-266.285,-131.824,-117.675,-134.816,0,-121.27	1/1:42:0,42,0:0:0:42,0:1471,0:-132.681,-12.6433,0,-132.681,-12.6433,-132.681	1/2:7:0,5,2:0:0:5,2:165,72:-19.5529,-6.23466,-4.72951,-13.6695,0,-13.0675	1/2:69:0,30,39:0:0:30,39:1076,1396:-201.958,-114.194,-105.163,-88.1222,0,-76.382	1/2:27:0,9,18:0:0:9,18:309,648:-78.3146,-53.231,-50.5217,-25.4323,0,-20.0138	1/2:4:0,3,1:0:0:3,1:106,36: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chr07	20355901	.	T	C	19621.2	PASS	AB=0.511966;ABP=5.92044;AC=47;AF=0.252688;AN=186;AO=1203;CIGAR=1X;DP=5022;DPB=5022;DPRA=0.885177;EPP=2597.95;EPPR=8157.47;GTI=1;LEN=1;MEANALT=1;MQM=59.9476;MQMR=59.961;NS=93;NUMALT=1;ODDS=0.735983;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42318;QR=136423;RO=3819;RPL=2;RPP=2597.95;RPPR=8157.47;RPR=1201;RUN=1;SAF=1203;SAP=2615.29;SAR=0;SRF=3819;SRP=8295.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:12,11:12:432:11:384:-27.971,0,-32.2975	0/1:75:45,30:45:1581:30:1072:-74.2152,0,-120.001	0/1:53:32,21:32:1148:21:748:-51.6907,0,-87.6752	0/1:107:55,52:55:1967:52:1816:-131.508,0,-145.094	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:73:73,0:73:2582:0:0:0,-21.9752,-232.626	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:60:27,33:27:955:33:1171:-87.6325,0,-68.2031	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:69:41,28:41:1459:28:987:-68.372,0,-110.834	0/1:60:29,31:29:1036:31:1075:-78.9955,0,-75.4921	0/1:26:13,13:13:459:13:455:-33.4552,0,-33.8173	0/1:51:26,25:26:932:25:879:-64.0743,0,-68.8463	0/0:42:42,0:42:1486:0:0:0,-12.6433,-134.033	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:12:7,5:7:248:5:171:-12.1131,0,-19.0518	0/1:109:50,59:50:1779:59:2066:-153.398,0,-127.58	0/0:75:75,0:75:2667:0:0:0,-22.5772,-240.271	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:56:56,0:56:1982:0:0:0,-16.8577,-178.653	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:33:18,15:18:644:15:536:-38.6408,0,-48.3566	0/1:116:52,64:52:1860:64:2249:-167.753,0,-132.76	0/0:197:197,0:197:7005:0:0:0,-59.3029,-630.518	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:109:55,54:55:1959:54:1873:-136.022,0,-143.282	0/1:122:60,62:60:2139:62:2187:-160.37,0,-156.052	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.15	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:7:2,5:2:72:5:163:-12.8842,0,-4.72951	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5265	0/0:135:135,0:135:4844:0:0:0,-40.639,-436.113	0/1:56:28,28:28:999:28:980:-71.6551,0,-73.3668	0/1:31:19,12:19:676:12:428:-29.5269,0,-51.8361	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:122:66,56:66:2352:56:1977:-141.478,0,-175.214	0/1:20:8,12:8:288:12:428:-32.8382,0,-20.2468	0/1:46:23,23:23:828:23:817:-60.0039,0,-60.9517	0/1:35:19,16:19:684:16:556:-39.8311,0,-51.3543	0/1:35:16,19:16:572:19:668:-49.9096,0,-41.2774	0/0:91:91,0:91:3247:0:0:0,-27.3937,-292.451	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.036	0/1:77:27,50:27:972:50:1771:-136.493,0,-64.6186	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:61:61,0:61:2161:0:0:0,-18.3628,-194.755	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	0/1:94:50,44:50:1792:44:1545:-111.044,0,-133.265	0/0:45:45,0:45:1591:0:0:0,-13.5463,-143.48	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:68:29,39:29:1032:39:1368:-102.941,0,-72.7234	0/1:29:11,18:11:375:18:625:-47.8427,0,-25.348	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	.:.:.:.:.:.:.:.	0/0:92:92,0:92:3292:0:0:0,-27.6948,-295.48	0/0:119:115,4:115:4128:4:144:0,-22.509,-358.013	0/1:29:14,15:14:504:15:531:-39.392,0,-36.9682	0/0:34:33,1:33:1188:1:36:0,-6.63674,-103.63	0/1:68:38,30:38:1360:30:1072:-76.3224,0,-102.23	0/1:83:26,57:26:932:57:2014:-156.547,0,-59.2134	0/1:9:4,5:4:144:5:160:-12.0052,0,-10.6043	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/1:28:14,14:14:500:14:496:-36.5454,0,-36.9073	0/1:14:11,3:11:392:3:99:-5.02216,0,-31.4056	0/0:117:117,0:117:4187:0:0:0,-35.2205,-377.01	0/1:69:29,40:29:1029:40:1420:-107.318,0,-72.1501	0/0:56:56,0:56:1986:0:0:0,-16.8577,-179.013	0/0:86:86,0:86:3083:0:0:0,-25.8886,-277.697	0/1:28:11,17:11:384:17:603:-46.1707,0,-26.4658	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:168:168,0:168:6003:0:0:0,-50.573,-540.376	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:66:27,39:27:968:39:1357:-102.557,0,-67.5694	0/1:33:15,18:15:536:18:623:-46.4591,0,-38.6408	0/1:99:49,50:49:1760:50:1767:-129.508,0,-128.882	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:19:8,11:8:288:11:375:-28.3583,0,-20.5478	0/1:54:29,25:29:1031:25:883:-63.5318,0,-76.847	0/1:51:19,32:19:676:32:1131:-86.7452,0,-45.8145	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859
chr07	20357901	.	G	A	193832	PASS	AB=0.520665;ABP=24.1911;AC=142;AF=0.755319;AN=188;AO=9139;CIGAR=1X;DP=11882;DPB=11882;DPRA=0;EPP=19848.1;EPPR=5952.84;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9849;MQMR=59.9891;NS=94;NUMALT=1;ODDS=1.78301;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=326941;QR=97964;RO=2740;RPL=0;RPP=19848.1;RPPR=5952.84;RPR=9139;RUN=1;SAF=9139;SAP=19848.1;SAR=0;SRF=2740;SRP=5952.84;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:11,9:11:388:9:324:-23.4853,0,-29.2007	0/1:255:115,140:115:4096:140:5012:-374.464,0,-292.062	0/1:213:86,126:86:3076:126:4472:-337.847,0,-212.89	0/1:236:104,132:104:3720:132:4732:-354.925,0,-263.959	1/1:83:0,83:0:0:83:2964:-266.994,-24.9855,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:109:1,108:1:36:108:3868:-344.71,-29.214,0	1/1:232:0,232:0:0:232:8308:-747.728,-69.839,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:193:110,83:110:3948:83:2976:-209.974,0,-297.412	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:61:28,33:28:1004:33:1180:-88.1452,0,-72.313	0/1:60:33,27:33:1176:27:972:-69.7361,0,-88.086	0/1:79:44,35:44:1572:35:1248:-88.8429,0,-117.99	0/1:73:32,41:32:1135:41:1475:-111.071,0,-80.4829	1/1:51:0,51:0:0:51:1828:-164.8,-15.3525,0	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:83:0,83:0:0:83:2970:-267.533,-24.9855,0	0/1:23:15,8:15:527:8:288:-19.3437,0,-40.8365	0/1:342:145,196:145:5200:196:6985:-525.7,0,-365.126	1/1:186:0,186:0:0:186:6672:-600.551,-55.9916,0	1/1:97:0,97:0:0:97:3453:-310.984,-29.1999,0	1/1:111:0,111:0:0:111:3976:-358.03,-33.4143,0	1/1:120:0,120:0:0:120:4296:-386.817,-36.1236,0	0/1:71:42,29:42:1504:29:1036:-72.1808,0,-114.281	0/1:573:278,295:278:9948:295:10537:-775.756,0,-722.77	1/1:209:0,209:0:0:209:7485:-673.69,-62.9153,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:342:175,167:175:6272:167:5951:-432.743,0,-461.621	0/1:230:86,144:86:3072:144:5149:-394.313,0,-207.472	1/1:155:0,155:0:0:155:5542:-498.902,-46.6597,0	0/1:7:5,2:5:165:2:72:-4.72951,0,-13.0664	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:173:0,173:0:0:173:6206:-558.634,-52.0782,0	0/1:332:161,171:161:5767:171:6099:-449.07,0,-419.202	0/1:55:26,29:26:924:29:1044:-77.7182,0,-66.921	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:171:78,93:78:2792:93:3332:-248.62,0,-200.044	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/1:187:103,83:103:3688:83:2976:-211.721,0,-275.771	0/1:83:35,48:35:1256:48:1719:-130.009,0,-88.3598	0/1:64:36,28:36:1292:28:1000:-71.0495,0,-97.3178	1/1:69:0,69:0:0:69:2484:-223.813,-20.7711,0	1/1:141:0,141:0:0:141:5048:-454.465,-42.4452,0	0/1:290:121,169:121:4311:169:6033:-455.776,0,-300.867	1/1:153:0,153:0:0:153:5470:-492.426,-46.0576,0	1/1:333:1,332:1:36:332:11884:-1065.82,-96.6447,0	1/1:148:0,148:0:0:148:5276:-474.977,-44.5524,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:163:68,95:68:2423:95:3396:-256.788,0,-169.258	1/1:73:0,73:0:0:73:2564:-231.008,-21.9752,0	0/1:17:13,4:13:468:4:144:-8.19611,0,-37.3421	0/1:191:68,123:68:2428:123:4388:-337.598,0,-161.279	0/1:35:26,9:26:932:9:323:-18.879,0,-73.6628	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:87:0,87:0:0:87:3112:-280.262,-26.1896,0	1/1:90:0,90:0:0:90:3233:-291.191,-27.0927,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:581:1,580:1:36:580:20672:-1856.27,-171.3,0	1/1:337:1,336:1:36:336:12049:-1080.66,-97.8488,0	0/1:65:25,40:25:896:40:1436:-109.971,0,-61.3934	1/1:93:0,93:0:0:93:3309:-298.029,-27.9958,0	0/1:236:120,116:120:4288:116:4145:-302.19,0,-315.055	0/1:204:141,63:141:5048:63:2256:-141.893,0,-393.055	0/1:14:7,7:7:244:7:252:-18.8145,0,-18.085	1/1:104:0,104:0:0:104:3739:-336.709,-31.3071,0	0/1:77:37,40:37:1324:40:1426:-105.458,0,-96.2828	0/1:30:10,20:10:356:20:720:-56.0975,0,-23.3503	1/1:66:0,66:0:0:66:2348:-211.577,-19.868,0	0/1:83:38,45:38:1353:45:1616:-120.745,0,-97.0829	1/1:148:0,148:0:0:148:5301:-477.225,-44.5524,0	1/1:361:0,361:0:0:361:12941:-1164.5,-108.672,0	0/1:131:44,87:44:1576:87:3112:-240.872,0,-102.692	1/1:163:1,162:1:36:162:5789:-517.525,-45.4696,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:211:0,211:0:0:211:7560:-680.437,-63.5173,0	1/1:163:0,163:0:0:163:5817:-523.639,-49.0679,0	1/1:219:0,219:0:0:219:7868:-708.142,-65.9256,0	1/1:87:0,87:0:0:87:3112:-280.307,-26.1896,0	0/1:61:34,27:34:1220:27:968:-69.0745,0,-91.744	0/1:113:55,58:55:1951:58:2064:-152.014,0,-141.849	0/1:128:69,59:69:2480:59:2103:-151.007,0,-184.921	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:79:0,79:0:0:79:2817:-253.769,-23.7814,0	1/1:75:1,74:1:36:74:2655:-235.598,-18.979,0	0/1:29:17,12:17:604:12:432:-30.4913,0,-45.9607	0/1:55:31,24:31:1108:24:853:-60.5335,0,-83.4743	0/1:64:33,31:33:1172:31:1112:-81.1254,0,-86.5216	1/1:363:0,363:0:0:363:13028:-1172.32,-109.274,0	1/1:94:0,94:0:0:94:3375:-303.964,-28.2968,0
chr07	20358018	.	C	T	106642	PASS	AB=0.516427;ABP=9.85913;AC=138;AF=0.741935;AN=186;AO=5021;CIGAR=1X;DP=6447;DPB=6447;DPRA=28.3165;EPP=10906;EPPR=3097.36;GTI=2;LEN=1;MEANALT=1.01099;MQM=59.9811;MQMR=60;NS=93;NUMALT=1;ODDS=1.88251;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179439;QR=50728;RO=1425;RPL=5021;RPP=10906;RPPR=3097.36;RPR=0;RUN=1;SAF=0;SAP=10906;SAR=5021;SRF=0;SRP=3097.36;SRR=1425;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:16,24:16:564:24:864:-66.0414,0,-39.0491	0/1:53:24,29:24:860:29:1044:-78.3202,0,-61.7672	0/1:86:38,48:38:1364:48:1720:-129.197,0,-97.1721	0/1:121:59,62:59:2112:62:2232:-164.719,0,-153.924	1/1:23:0,23:0:0:23:825:-73.5498,-6.92369,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:128:0,128:0:0:128:4574:-411.822,-38.5318,0	1/1:141:0,141:0:0:141:5034:-453.204,-42.4452,0	1/1:90:0,90:0:0:90:3202:-288.401,-27.0927,0	0/1:69:32,37:32:1118:37:1317:-98.0588,0,-80.1524	1/1:32:0,32:0:0:32:1133:-102.277,-9.63296,0	0/1:81:33,48:33:1173:48:1709:-129.52,0,-81.4921	0/1:74:39,35:39:1404:35:1260:-91.4293,0,-104.383	0/1:43:18,25:18:648:25:900:-68.3767,0,-45.7076	0/1:88:37,51:37:1332:51:1836:-139.03,0,-93.6917	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:36:23,13:23:828:13:468:-31.6226,0,-64.007	0/1:121:59,62:59:2116:62:2224:-164,0,-154.284	1/1:122:0,122:0:0:122:4316:-388.614,-36.7257,0	1/1:74:0,74:0:0:74:2641:-237.935,-22.2762,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:44:1,43:1:36:43:1548:-136.015,-9.64705,0	0/1:65:32,33:32:1137:33:1188:-87.6616,0,-83.07	0/1:147:60,87:60:2096:87:3094:-234.434,0,-144.652	1/1:162:0,162:0:0:162:5809:-522.92,-48.7669,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:149:59,90:59:2081:90:3217:-244.897,0,-142.703	0/1:92:51,41:51:1809:41:1468:-104.721,0,-135.395	1/1:89:3,86:3:93:86:3084:-269.111,-18.1149,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:178:1,177:1:36:177:6323:-565.559,-49.9851,0	0/1:73:25,48:25:900:48:1728:-133.83,0,-59.3458	0/1:43:26,17:26:921:17:612:-42.4691,0,-70.2609	.:.:.:.:.:.:.:.	0/1:69:30,39:30:1080:39:1389:-104.536,0,-76.7422	0/1:36:18,18:18:648:18:648:-47.8148,0,-47.8148	0/1:72:43,29:43:1540:29:1029:-71.247,0,-117.219	0/1:58:29,29:29:1040:29:1032:-75.7332,0,-76.4546	0/1:51:31,20:31:1112:20:720:-49.7762,0,-85.0388	1/1:119:0,119:0:0:119:4250:-382.676,-35.8226,0	1/1:78:0,78:0:0:78:2731:-246.029,-23.4803,0	0/1:88:45,43:45:1601:43:1548:-113.122,0,-117.888	1/1:102:0,102:0:0:102:3630:-326.903,-30.7051,0	1/1:73:0,73:0:0:73:2613:-235.416,-21.9752,0	1/1:87:0,87:0:0:87:3090:-278.326,-26.1896,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:84:56,28:56:1978:28:963:-61.6883,0,-153.004	1/1:34:0,34:0:0:34:1209:-109.114,-10.235,0	0/1:6:3,3:3:93:3:108:-8.26899,0,-6.87055	0/1:80:31,49:31:1097:49:1745:-133.25,0,-74.9556	0/1:39:15,24:15:525:24:864:-66.3424,0,-35.8379	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	1/1:80:0,80:0:0:80:2786:-250.974,-24.0824,0	1/1:108:0,108:0:0:108:3888:-350.112,-32.5112,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:125:0,125:0:0:125:4477:-403.097,-37.6288,0	1/1:153:1,152:1:36:152:5440:-485.758,-42.4593,0	0/1:66:31,35:31:1116:35:1260:-93.8375,0,-80.8837	1/1:45:0,45:0:0:45:1615:-145.64,-13.5464,0	0/1:111:38,73:38:1338:73:2598:-200.651,0,-87.3016	0/1:117:67,50:67:2393:50:1796:-126.702,0,-180.405	0/1:28:10,18:10:360:18:648:-50.223,0,-24.3155	1/1:52:0,52:0:0:52:1857:-167.408,-15.6536,0	0/1:51:19,32:19:680:32:1152:-88.6376,0,-46.1766	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5887	1/1:105:0,105:0:0:105:3740:-336.798,-31.6082,0	0/1:97:52,45:52:1808:45:1620:-116.879,0,-133.794	1/1:108:0,108:0:0:108:3850:-346.694,-32.5112,0	1/1:142:0,142:0:0:142:5085:-457.792,-42.7463,0	0/1:29:11,18:11:388:18:644:-49.5607,0,-26.5275	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:90:0,90:0:0:90:3217:-289.751,-27.0927,0	1/1:132:0,132:0:0:132:4744:-427.116,-39.736,0	1/1:54:1,53:1:36:53:1889:-166.688,-12.6573,0	0/1:68:39,29:39:1400:29:1044:-73.8048,0,-105.829	0/1:52:27,25:27:942:25:885:-64.313,0,-69.4363	0/1:123:55,68:55:1980:68:2423:-181.298,0,-141.448	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:44:0,44:0:0:44:1565:-141.14,-13.2453,0	1/1:65:0,65:0:0:65:2334:-210.319,-19.567,0	0/1:36:19,17:19:684:17:597:-43.219,0,-51.0532	0/1:68:38,29:38:1368:29:1044:-73.7845,0,-102.931	0/1:68:46,22:46:1641:22:784:-50.4139,0,-127.507	1/1:133:0,133:0:0:133:4768:-429.277,-40.037,0	1/1:82:1,81:1:36:81:2908:-258.357,-21.0862,0
chr07	20359074	.	A	G	56278.6	PASS	AB=0.470775;ABP=56.8259;AC=48;AF=0.255319;AN=188;AO=3433;CIGAR=1X;DP=15654;DPB=15654;DPRA=1.01946;EPP=7457.68;EPPR=26534.1;GTI=1;LEN=1;MEANALT=1.03448;MQM=59.5753;MQMR=59.989;NS=94;NUMALT=1;ODDS=3.49306;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122634;QR=435398;RO=12218;RPL=0;RPP=7457.68;RPPR=26534.1;RPR=3433;RUN=1;SAF=3433;SAP=7457.68;SAR=0;SRF=12218;SRP=26534.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:93:53,40:53:1873:40:1399:-97.9883,0,-140.851	0/1:179:79,100:79:2809:100:3556:-266.089,0,-199.165	0/1:397:214,183:214:7653:183:6532:-468.079,0,-569.296	0/1:415:187,228:187:6689:228:8158:-608.803,0,-477.158	0/0:115:113,2:113:4017:2:68:0,-28.1607,-355.262	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:151:151,0:151:5380:0:0:0,-45.4555,-484.335	0/0:294:294,0:294:10481:0:0:0,-88.5028,-943.211	0/0:200:200,0:200:7065:0:0:0,-60.206,-635.913	0/1:87:41,46:41:1468:46:1607:-118.721,0,-106.226	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:85:43,42:43:1548:42:1504:-109.931,0,-114.026	0/1:109:64,45:64:2292:45:1616:-112.768,0,-173.729	0/1:61:19,42:19:680:42:1500:-116.916,0,-43.1663	0/1:116:66,50:66:2368:50:1796:-126.991,0,-178.459	0/0:96:95,0:95:3404:0:0:0,-28.5978,-306.215	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:29:15,14:15:536:14:496:-36.2444,0,-39.8449	0/1:402:253,149:253:9030:149:5323:-358.183,0,-691.664	0/0:273:273,0:273:9711:0:0:0,-82.1812,-873.898	0/0:289:289,0:289:10255:0:0:0,-86.9977,-922.884	0/0:304:302,2:302:10733:2:72:0,-84.6764,-959.042	0/0:72:72,0:72:2561:0:0:0,-21.6742,-230.739	0/1:136:75,61:75:2664:61:2192:-156.596,0,-199.067	0/1:447:258,189:258:9202:189:6742:-472.284,0,-693.592	0/0:383:383,0:383:13591:0:0:0,-115.294,-1222.98	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:502:263,239:263:9359:239:8566:-619.776,0,-691.16	0/1:287:165,122:165:5896:122:4335:-303.855,0,-444.356	0/0:198:197,1:197:7017:1:36:0,-56.0057,-627.997	0/1:23:8,15:8:273:15:540:-42.0082,0,-17.9765	0/0:18:17,1:17:600:1:36:0,-1.82026,-50.7309	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:33:25,8:25:896:8:288:-16.3325,0,-71.0264	0/0:201:201,0:201:7193:0:0:0,-60.507,-647.424	0/1:205:116,88:116:4140:88:3156:-222.415,0,-311.015	0/1:43:20,23:20:716:23:824:-61.5372,0,-51.8234	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:266:173,93:173:6192:93:3344:-221.093,0,-477.304	0/1:29:12,17:12:417:17:612:-46.6136,0,-29.1303	0/1:353:199,154:199:7105:154:5468:-385.922,0,-533.243	0/1:78:33,45:33:1180:45:1612:-121.89,0,-83.0277	0/1:73:38,35:38:1364:35:1260:-91.7303,0,-101.086	0/0:181:181,0:181:6476:0:0:0,-54.4864,-582.926	0/0:290:290,0:290:10374:0:0:0,-87.2987,-933.574	0/1:375:194,181:194:6871:181:6458:-468.367,0,-505.577	0/0:162:162,0:162:5733:0:0:0,-48.7669,-515.464	0/0:198:198,0:198:6994:0:0:0,-59.6039,-629.525	0/0:233:233,0:233:8297:0:0:0,-70.14,-746.743	0/1:18:6,12:6:216:12:432:-33.8003,0,-14.372	0/1:310:173,137:173:6156:137:4904:-347.934,0,-460.817	0/0:199:199,0:199:7045:0:0:0,-59.905,-634.113	0/1:17:11,6:11:396:6:212:-14.2608,0,-30.8652	0/1:271:152,119:152:5444:119:4258:-301.303,0,-408.509	0/1:94:59,35:59:2104:35:1248:-84.3257,0,-161.333	0/1:29:21,7:21:733:7:252:-14.2403,0,-57.5015	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:10:5,5:5:180:5:176:-13.0835,0,-13.5418	0/0:470:470,0:470:16755:0:0:0,-141.484,-1507.61	0/0:360:356,4:356:12710:4:144:0,-95.0572,-1130.4	0/1:109:72,37:72:2576:37:1324:-86.6465,0,-199.277	0/0:250:249,1:249:8874:1:32:0,-72.0582,-795.446	0/1:317:188,129:188:6662:129:4612:-319.777,0,-504.237	0/1:238:68,170:68:2436:170:6097:-477.152,0,-147.85	0/1:43:22,21:22:788:21:756:-55.4183,0,-58.3005	0/0:127:127,0:127:4556:0:0:0,-38.2308,-410.205	0/1:39:17,22:17:608:22:777:-58.5102,0,-43.3119	0/1:36:13,23:13:464:23:820:-63.2831,0,-31.2604	0/0:204:204,0:204:7285:0:0:0,-61.4101,-655.702	0/1:181:105,76:105:3713:76:2713:-189.81,0,-279.888	0/0:222:222,0:222:7881:0:0:0,-66.8287,-709.324	0/0:454:454,0:454:16273:0:0:0,-136.668,-1464.24	0/1:203:86,117:86:3045:117:4180:-314.63,0,-213.171	0/0:201:199,2:199:7089:2:72:0,-53.7176,-631.283	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:279:278,1:278:9902:1:36:0,-80.3891,-887.527	0/0:283:283,0:283:10073:0:0:0,-85.1915,-906.482	0/0:454:451,3:451:15983:3:93:0,-127.991,-1429.49	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/1:94:42,52:42:1508:52:1860:-139.371,0,-107.718	0/1:66:31,35:31:1116:35:1240:-92.0304,0,-80.8837	0/1:138:60,78:60:2144:78:2777:-208.618,0,-151.686	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:90:90,0:90:3205:0:0:0,-27.0927,-288.672	0/0:97:97,0:97:3465:0:0:0,-29.1999,-312.058	0/1:44:21,23:21:741:23:828:-61.5988,0,-53.7663	0/1:77:34,43:34:1209:43:1539:-115.614,0,-85.9348	0/1:78:29,49:29:1032:49:1760:-135.19,0,-69.7131	0/0:297:296,1:296:10566:1:36:0,-85.8076,-947.199	0/0:112:112,0:112:4001:0:0:0,-33.7154,-360.278
chr07	20359092	.	A	G	56039.5	PASS	AB=0.47561;ABP=39.8724;AC=48;AF=0.255319;AN=188;AO=3419;CIGAR=1X;DP=15359;DPB=15359;DPRA=1.15591;EPP=7427.27;EPPR=25291.5;GTI=1;LEN=1;MEANALT=1.04762;MQM=59.5724;MQMR=59.9856;NS=94;NUMALT=1;ODDS=3.66976;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122008;QR=427042;RO=11936;RPL=0;RPP=7427.27;RPPR=25300.1;RPR=3419;RUN=1;SAF=3419;SAP=7427.27;SAR=0;SRF=11935;SRP=25913;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:89:51,38:51:1820:38:1364:-96.1077,0,-137.29	0/1:180:81,99:81:2886:99:3548:-265.064,0,-205.79	0/1:381:204,177:204:7280:177:6302:-452.205,0,-540.562	0/1:416:180,236:180:6440:236:8432:-633.148,0,-454.459	0/0:118:116,2:116:4139:2:72:0,-28.6848,-365.835	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:149:149,0:149:5336:0:0:0,-44.8535,-480.373	0/0:287:287,0:287:10280:0:0:0,-86.3956,-925.124	0/0:196:196,0:196:7013:0:0:0,-59.0019,-631.23	0/1:85:39,46:39:1396:46:1631:-121.488,0,-100.352	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:84:43,41:43:1548:41:1468:-107.054,0,-114.327	0/1:105:62,43:62:2215:43:1536:-106.801,0,-168.006	0/1:59:17,42:17:612:42:1500:-117.515,0,-37.6527	0/1:114:63,50:63:2244:50:1800:-127.878,0,-167.848	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.765	0/0:45:44,1:44:1580:1:36:0,-9.94807,-138.893	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:28:14,14:14:500:14:504:-37.2693,0,-36.9073	0/1:391:248,143:248:8872:143:5111:-342.42,0,-680.763	0/0:268:268,0:268:9603:0:0:0,-80.676,-864.203	0/0:283:283,0:283:10128:0:0:0,-85.1915,-910.676	0/0:296:294,2:294:10528:2:72:0,-82.2682,-940.595	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:135:73,62:73:2608:62:2208:-158.337,0,-194.329	0/1:447:259,188:259:9244:188:6694:-467.966,0,-697.37	0/0:373:373,0:373:13367:0:0:0,-112.284,-1202.82	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:496:262,234:262:9384:234:8352:-602.371,0,-695.212	0/1:275:154,121:154:5520:121:4327:-306.748,0,-414.142	0/0:196:195,1:195:6996:1:36:0,-55.4036,-626.103	0/1:24:8,16:8:284:16:568:-44.2207,0,-18.6786	0/0:17:16,1:16:576:1:36:0,-1.51923,-48.5767	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:13:5,8:5:172:8:284:-21.99,0,-11.9046	0/1:31:24,7:24:856:7:252:-13.697,0,-68.0292	0/0:200:200,0:200:7168:0:0:0,-60.206,-645.175	0/1:202:113,88:113:4040:88:3129:-220.893,0,-302.922	0/1:42:19,23:19:684:23:828:-62.1976,0,-49.2471	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:263:171,92:171:6108:92:3296:-217.679,0,-470.652	0/1:28:11,17:11:396:17:595:-45.4383,0,-27.5539	0/1:348:192,156:192:6868:156:5520:-392.095,0,-513.431	0/1:76:32,44:32:1139:44:1584:-119.973,0,-79.9397	0/1:71:37,34:37:1324:34:1216:-88.3734,0,-98.089	0/0:178:178,0:178:6380:0:0:0,-53.5833,-574.288	0/0:283:283,0:283:10104:0:0:0,-85.1915,-909.295	0/1:366:183,183:183:6560:183:6529:-477.468,0,-480.304	0/0:160:160,0:160:5716:0:0:0,-48.1648,-513.933	0/0:190:190,0:190:6836:0:0:0,-57.1957,-615.306	0/0:227:226,1:226:8104:1:36:0,-64.7355,-725.777	0/1:18:6,12:6:212:12:432:-33.8003,0,-14.0063	0/1:300:166,134:166:5913:134:4793:-341.078,0,-441.972	0/0:195:195,0:195:6979:0:0:0,-58.7008,-628.174	0/1:18:12,6:12:432:6:216:-14.3254,0,-33.8027	0/1:265:146,119:146:5236:119:4267:-303.627,0,-391.604	0/1:91:58,33:58:2080:33:1184:-79.4722,0,-160.077	0/1:29:22,7:22:792:7:252:-14.2991,0,-62.8758	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.444	0/0:69:68,0:68:2444:0:0:0,-20.47,-219.855	0/1:11:6,5:6:216:5:180:-13.2383,0,-16.4792	0/0:459:457,2:457:16326:2:72:0,-131.336,-1462.18	0/0:354:350,4:350:12505:4:144:0,-93.251,-1111.95	0/1:105:69,36:69:2441:36:1284:-84.2471,0,-188.336	0/0:245:244,1:244:8721:1:32:0,-70.553,-781.653	0/1:311:184,127:184:6586:127:4519:-313.219,0,-499.197	0/1:238:67,171:67:2396:171:6095:-476.954,0,-144.252	0/1:42:22,20:22:788:20:720:-52.4809,0,-58.6015	0/0:126:126,0:126:4504:0:0:0,-37.9298,-405.529	0/1:39:17,22:17:604:22:788:-59.5046,0,-42.9504	0/1:37:13,24:13:464:24:841:-64.7825,0,-30.9594	0/0:200:199,1:199:7128:1:36:0,-56.6077,-637.979	0/1:182:106,76:106:3784:76:2703:-188.611,0,-285.972	0/0:216:216,0:216:7719:0:0:0,-65.0225,-694.744	0/0:441:441,0:441:15737:0:0:0,-132.754,-1416.03	0/1:205:87,118:87:3109:118:4217:-317.672,0,-218.324	0/0:195:192,2:192:6896:2:72:0,-51.9694,-613.914	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:277:276,1:276:9896:1:36:0,-79.787,-886.981	0/0:277:275,2:275:9831:2:72:0,-76.5486,-877.87	0/0:445:442,3:442:15809:3:104:0,-124.256,-1412.8	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:93:41,52:41:1468:52:1859:-139.581,0,-104.42	0/1:66:31,35:31:1097:35:1247:-92.6628,0,-79.17	0/1:137:58,79:58:2080:79:2827:-213.417,0,-146.229	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.334	0/1:44:21,23:21:756:23:828:-61.5988,0,-55.1219	0/1:75:32,43:32:1152:43:1504:-113.068,0,-81.4129	0/1:75:28,47:28:985:47:1674:-128.357,0,-66.3843	0/0:288:286,2:286:10203:2:72:0,-79.8599,-911.237	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.39
chr07	20359100	.	G	T	53062.5	PASS	AB=0.468962;ABP=62.3214;AC=48;AF=0.255319;AN=188;AO=3342;CIGAR=1X;DP=15281;DPB=15281;DPRA=1.07024;EPP=7190.75;EPPR=25663.9;GTI=2;LEN=1;MEANALT=1.11667;MQM=59.5745;MQMR=59.9936;NS=94;NUMALT=1;ODDS=1.73527;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117023;QR=425971;RO=11929;RPL=3333;RPP=7182.11;RPPR=25663.9;RPR=9;RUN=1;SAF=3341;SAP=7251.39;SAR=1;SRF=11929;SRP=25906.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:90:52,38:52:1848:38:1323:-92.06,0,-139.507	0/1:180:80,98:80:2838:98:3459:-257.424,0,-201.716	0/1:389:209,180:209:7466:180:6393:-458.061,0,-554.884	0/1:403:183,220:183:6517:220:7681:-570.017,0,-465.299	0/0:112:110,2:110:3924:2:68:0,-27.2576,-346.887	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:147:147,0:147:5240:0:0:0,-44.2514,-471.737	0/0:291:291,0:291:10328:0:0:0,-87.5997,-929.452	0/0:197:197,0:197:7020:0:0:0,-59.3029,-631.863	0/1:86:41,45:41:1464:45:1534:-112.457,0,-106.167	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:81:41,40:41:1476:40:1424:-103.989,0,-108.753	0/1:105:62,43:62:2219:43:1491:-102.764,0,-168.366	0/1:60:19,41:19:680:41:1419:-109.931,0,-43.4674	0/1:115:66,49:66:2341:49:1721:-120.55,0,-176.33	0/0:97:97,0:97:3473:0:0:0,-29.1999,-312.78	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/1:28:14,14:14:504:14:491:-36.0923,0,-37.2693	0/1:396:249,147:249:8923:147:5161:-345.418,0,-683.843	0/0:266:265,1:265:9427:1:36:0,-76.4757,-844.793	0/0:280:280,0:280:9976:0:0:0,-84.2884,-897.783	0/0:295:293,2:293:10462:2:68:0,-82.3461,-935.04	0/0:71:71,0:71:2515:0:0:0,-21.3731,-226.603	0/1:133:73,60:73:2580:60:2078:-147.249,0,-192.411	0/1:442:257,185:257:9204:185:6454:-447.875,0,-695.275	0/0:374:374,0:374:13381:0:0:0,-112.585,-1204.08	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/1:491:261,229:261:9312:229:7983:-570.64,0,-690.184	0/1:282:161,121:161:5706:121:4270:-299.52,0,-428.771	0/0:195:194,1:194:6940:1:36:0,-55.1026,-621.068	0/1:23:8,15:8:288:15:528:-40.9212,0,-19.3437	0/0:18:17,1:17:604:1:21:0,-3.31859,-52.5907	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:29:23,6:23:828:6:216:-11.0606,0,-66.1142	0/0:196:195,1:195:6980:1:36:0,-55.4036,-624.663	0/1:203:115,88:115:4082:88:3089:-217.059,0,-306.456	0/1:41:19,22:19:680:22:788:-58.9017,0,-49.1869	0/1:5:3,2:3:104:2:64:-4.57354,0,-8.19766	0/1:260:170,90:170:6068:90:3166:-206.891,0,-467.957	0/1:29:12,17:12:428:17:596:-45.2085,0,-30.1289	0/1:345:195,150:195:6956:150:5241:-367.921,0,-522.251	0/1:75:31,44:31:1116:44:1518:-114.33,0,-78.1744	0/1:72:37,35:37:1319:35:1228:-89.1469,0,-97.337	0/0:180:180,0:180:6428:0:0:0,-54.1854,-578.607	0/0:282:281,1:281:10053:1:36:0,-81.2922,-901.106	0/1:360:184,176:184:6560:176:6166:-446.673,0,-482.112	0/0:159:159,0:159:5672:0:0:0,-47.8638,-510.599	0/0:195:195,0:195:6992:0:0:0,-58.7008,-629.342	0/0:231:231,0:231:8249:0:0:0,-69.5379,-742.422	0/1:18:7,11:7:252:11:379:-29.0211,0,-17.6104	0/1:303:169,133:169:6039:133:4722:-333.618,0,-452.344	0/0:192:192,0:192:6860:0:0:0,-57.7978,-617.471	0/1:18:12,6:12:428:6:194:-12.3521,0,-33.4403	0/1:259:145,114:145:5159:114:4001:-282.304,0,-386.484	0/1:93:58,35:58:2068:35:1209:-81.1127,0,-158.395	0/1:26:19,7:19:680:7:240:-14.1079,0,-53.7024	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:130:130,0:130:4628:0:0:0,-39.1339,-416.683	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/1:11:6,5:6:216:5:169:-12.2085,0,-16.4792	0/0:460:459,0:459:16428:0:0:0,-138.173,-1477.83	0/0:347:343,4:343:12275:4:144:0,-91.1438,-1091.28	0/1:100:66,34:66:2360:34:1195:-77.7434,0,-182.556	0/0:240:240,0:240:8573:0:0:0,-72.2472,-771.568	0/1:310:186,123:186:6643:123:4333:-296.733,0,-504.572	0/1:233:67,166:67:2408:166:5798:-451.761,0,-146.836	0/1:42:22,20:22:784:20:720:-52.4809,0,-58.2407	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.486	0/1:35:15,20:15:540:20:703:-53.0575,0,-38.4005	0/1:34:13,21:13:464:21:723:-55.1416,0,-31.8625	0/0:198:198,0:198:7066:0:0:0,-59.6039,-636.002	0/1:176:102,74:102:3639:74:2608:-181.873,0,-274.734	0/0:213:213,0:213:7620:0:0:0,-64.1194,-685.835	0/0:447:446,0:446:15966:0:0:0,-134.259,-1436.41	0/1:202:85,117:85:3056:117:4066:-305.179,0,-214.46	0/0:196:194,2:194:6949:2:68:0,-52.5914,-619.063	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:269:267,1:267:9546:1:36:0,-77.4376,-855.498	0/0:279:279,0:279:9919:0:0:0,-83.9874,-892.623	0/0:436:434,1:434:15521:1:36:0,-127.71,-1393	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:95:43,52:43:1544:52:1852:-138.35,0,-110.655	0/1:66:31,34:31:1098:34:1189:-87.3818,0,-79.202	0/1:136:58,78:58:2058:78:2649:-197.705,0,-144.55	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:94:94,0:94:3359:0:0:0,-28.2968,-302.524	0/1:45:21,24:21:752:24:838:-62.1854,0,-54.4599	0/1:75:34,41:34:1216:41:1421:-105.6,0,-87.1693	0/1:74:28,46:28:1008:46:1623:-124.073,0,-68.7601	0/0:291:290,1:290:10333:1:36:0,-84.0015,-926.168	0/0:110:110,0:110:3893:0:0:0,-33.1133,-350.564
chr07	20479787	.	G	T	14468.4	PASS	AB=0.467809;ABP=20.346;AC=48;AF=0.258065;AN=186;AO=906;CIGAR=1X;DP=4417;DPB=4417;DPRA=0.768911;EPP=1970.36;EPPR=7596.66;GTI=4;LEN=1;MEANALT=1.08;MQM=60;MQMR=59.9971;NS=93;NUMALT=1;ODDS=0.894954;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32389;QR=125009;RO=3505;RPL=906;RPP=1970.36;RPPR=7605.34;RPR=0;RUN=1;SAF=906;SAP=1970.36;SAR=0;SRF=3504;SRP=7605.34;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:18,7:18:640:7:243:-14.6817,0,-50.4036	0/1:47:21,26:21:756:26:936:-70.4111,0,-54.2188	0/1:80:35,45:35:1256:45:1620:-122.008,0,-89.2629	0/1:90:62,28:62:2224:28:996:-62.8622,0,-173.331	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/0:77:77,0:77:2757:0:0:0,-23.1793,-248.37	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:45:23,22:23:828:22:792:-58.0593,0,-61.2978	0/0:34:33,1:33:1184:1:36:0,-6.63674,-103.27	0/1:37:19,18:19:675:18:635:-46.3389,0,-49.9388	0/1:26:16,10:16:576:10:358:-24.7361,0,-44.3482	0/1:32:11,21:11:392:21:752:-58.3733,0,-25.9871	0/1:25:14,11:14:500:11:387:-27.6402,0,-37.8104	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/0:28:28,0:28:960:0:0:0,-8.42884,-86.705	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/1:17:11,6:11:388:6:216:-14.673,0,-30.1399	0/1:55:27,27:27:960:27:959:-70.0101,0,-70.101	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/0:60:60,0:60:2147:0:0:0,-18.0618,-193.497	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:63:63,0:63:2232:0:0:0,-18.9649,-201.142	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:146:75,71:75:2655:71:2556:-186.339,0,-195.244	0/0:108:107,0:107:3801:0:0:0,-32.2102,-341.929	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:112:60,52:60:2148:52:1868:-134.684,0,-159.872	0/1:49:24,25:24:851:25:892:-65.8492,0,-62.159	0/0:74:74,0:74:2633:0:0:0,-22.2762,-237.216	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:85:84,1:84:2976:1:36:0,-21.9893,-264.474	0/1:112:69,43:69:2463:43:1526:-103.916,0,-188.208	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:52:29,23:29:1036:23:812:-57.7474,0,-77.9004	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/1:99:52,47:52:1859:47:1679:-121.594,0,-137.787	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:26:12,13:12:432:13:459:-33.759,0,-31.3356	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.572	0/1:91:56,35:56:2008:35:1241:-84.5988,0,-153.6	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:67:66,0:66:2331:0:0:0,-19.868,-209.688	0/0:114:114,0:114:4070:0:0:0,-34.3174,-366.486	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:58:27,31:27:943:31:1116:-83.292,0,-67.7235	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	.:.:.:.:.:.:.:.	0/1:47:25,22:25:885:22:775:-55.922,0,-65.8181	0/1:20:11,9:11:388:9:320:-23.1218,0,-29.2368	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:77:77,0:77:2717:0:0:0,-23.1793,-244.774	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:89:89,0:89:3162:0:0:0,-26.7917,-284.805	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:38:17,21:17:612:21:748:-56.2062,0,-43.9743	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/1:71:45,26:45:1611:26:936:-63.1863,0,-123.906	0/1:46:13,33:13:464:33:1188:-93.3812,0,-28.2501	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:39:37,2:37:1320:2:72:0,-4.90345,-112.265	0/1:44:32,11:32:1128:11:392:-22.3162,0,-88.5244	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/1:42:17,25:17:608:25:892:-67.9564,0,-42.4088	0/0:101:101,0:101:3591:0:0:0,-30.404,-323.39	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:90:51,39:51:1823:39:1388:-98.1255,0,-137.258	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:70:70,0:70:2489:0:0:0,-21.0721,-224.262	0/0:109:109,0:109:3924:0:0:0,-32.8123,-353.351	0/0:36:36,0:36:1239:0:0:0,-10.8371,-111.808	0/1:18:9,9:9:316:9:320:-23.7238,0,-23.3603	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:49:22,26:22:783:26:936:-69.7502,0,-55.9839	0/0:25:25,0:25:876:0:0:0,-7.52575,-79.1543	0/0:54:54,0:54:1909:0:0:0,-16.2556,-172.085	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/1:41:18,23:18:644:23:819:-61.6893,0,-45.9484	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245
chr07	20501785	.	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chr07	20509265	.	G	C	98268.6	PASS	AB=0.499142;ABP=3.0364;AC=140;AF=0.744681;AN=188;AO=6638;CIGAR=1X;DP=8693;DPB=8693;DPRA=0;EPP=14365.2;EPPR=4439.33;GTI=2;LEN=1;MEANALT=1.07447;MQM=29.9905;MQMR=38.3996;NS=94;NUMALT=1;ODDS=0.989386;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233981;QR=72866;RO=2047;RPL=6632;RPP=14365.2;RPPR=4439.33;RPR=6;RUN=1;SAF=6638;SAP=14417.2;SAR=0;SRF=2047;SRP=4448.01;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:21,12:21:748:12:420:-16.8547,0,-52.1438	0/1:80:40,40:40:1405:40:1399:-70.5538,0,-92.4529	0/1:187:104,83:104:3708:83:2964:-138.807,0,-247.442	0/1:255:113,142:113:3995:142:5029:-304.709,0,-266.988	1/1:72:0,72:0:0:72:2540:-178.655,-21.6742,0	1/1:61:0,61:0:0:61:2170:-141.182,-18.3628,0	1/1:119:0,119:0:0:119:4214:-321.919,-35.8226,0	1/1:171:0,171:0:0:171:6011:-401.629,-51.4761,0	1/1:74:0,74:0:0:74:2612:-171.824,-22.2762,0	0/1:93:40,53:40:1402:53:1896:-114.734,0,-93.3205	1/1:49:0,49:0:0:49:1705:-126.925,-14.7505,0	0/1:72:44,28:44:1576:28:951:-40.9595,0,-107.966	0/1:58:31,27:31:1112:27:944:-45.326,0,-74.1028	0/1:54:27,26:27:968:26:885:-47.5913,0,-66.2522	0/1:81:47,34:47:1684:34:1202:-67.1459,0,-120.725	1/1:58:0,58:0:0:58:2036:-144.263,-17.4597,0	1/1:22:0,22:0:0:22:770:-51.5956,-6.62266,0	1/1:22:0,22:0:0:22:779:-50.9909,-6.62266,0	0/1:7:2,5:2:72:5:176:-9.84689,0,-4.16094	0/1:139:61,78:61:2188:78:2750:-169.136,0,-145.34	1/1:152:0,152:0:0:152:5326:-376.652,-45.7566,0	1/1:97:2,94:2:72:94:3289:-253.066,-22.4983,0	1/1:126:2,124:2:68:124:4371:-322.491,-31.6687,0	1/1:70:0,70:0:0:70:2464:-175.215,-21.0721,0	0/1:78:41,37:41:1453:37:1316:-70.5675,0,-100.177	0/1:256:132,123:132:4725:123:4342:-265.077,0,-334.213	1/1:280:0,280:0:0:280:9894:-698.115,-84.2884,0	1/1:26:0,26:0:0:26:913:-62.4693,-7.82678,0	0/1:298:137,159:137:4888:159:5618:-356.236,0,-337.12	0/1:116:53,63:53:1885:63:2225:-121.498,0,-124.335	1/1:120:3,117:3:108:117:4126:-301.87,-27.2032,0	0/1:5:1,4:1:36:4:144:-8.93285,0,-1.88245	1/1:15:0,15:0:0:15:528:-37.0929,-4.51545,0	1/1:5:0,5:0:0:5:180:-11.8492,-1.50515,0	0/1:16:3,13:3:108:13:468:-25.6737,0,-3.46864	0/1:25:18,7:18:648:7:248:-8.42257,0,-45.9457	1/1:140:0,139:0:0:139:4886:-383.594,-41.8432,0	0/1:125:57,68:57:2018:68:2386:-133.309,0,-130.398	0/1:33:15,18:15:536:18:648:-32.9091,0,-34.2192	0/1:5:2,3:2:72:3:108:-6.39388,0,-4.93129	0/1:188:99,89:99:3525:89:3135:-162.497,0,-240.426	0/1:24:14,10:14:504:10:356:-18.3585,0,-34.9626	0/1:157:68,89:68:2425:89:3149:-176.56,0,-158.636	0/1:47:20,27:20:712:27:959:-58.4189,0,-47.3792	0/1:24:14,10:14:492:10:332:-17.4722,0,-35.8937	1/1:110:0,110:0:0:110:3892:-307.673,-33.1133,0	1/1:158:0,158:0:0:158:5549:-370.547,-47.5627,0	0/1:143:77,66:77:2760:66:2335:-134.062,0,-194.806	1/1:98:1,97:1:36:97:3444:-260.083,-26.0464,0	1/1:140:0,140:0:0:140:4984:-376.963,-42.1442,0	1/1:121:0,121:0:0:121:4296:-343.347,-36.4246,0	0/1:6:3,3:3:108:3:104:-6.60146,0,-7.86639	0/1:100:54,46:54:1921:46:1640:-78.9857,0,-128.844	1/1:102:0,102:0:0:102:3617:-285.106,-30.7051,0	0/1:12:7,5:7:252:5:180:-8.5712,0,-17.5014	0/1:176:83,93:83:2909:93:3234:-176.885,0,-191.668	0/1:58:34,24:34:1203:24:851:-46.7687,0,-87.0164	0/1:9:4,5:4:144:5:172:-11.5859,0,-10.0177	1/1:18:0,18:0:0:18:640:-50.9464,-5.41854,0	1/1:109:0,109:0:0:109:3849:-270.9,-32.8123,0	1/1:89:0,89:0:0:89:3066:-232.996,-26.7917,0	0/1:7:4,3:4:144:3:108:-6.4455,0,-9.92896	1/1:176:0,176:0:0:176:6202:-491.274,-52.9813,0	1/1:162:0,161:0:0:161:5670:-432.983,-48.4658,0	0/1:53:25,28:25:900:28:1000:-54.3142,0,-60.6656	1/1:120:0,120:0:0:120:4237:-322.553,-36.1236,0	0/1:183:65,118:65:2312:118:4100:-255.902,0,-144.582	0/1:168:100,68:100:3561:68:2377:-132.988,0,-254.627	0/1:36:21,15:21:752:15:532:-26.7747,0,-52.8705	1/1:64:0,64:0:0:64:2263:-147.182,-19.2659,0	0/1:32:16,16:16:557:16:553:-34.0414,0,-39.2418	0/1:12:5,7:5:180:7:240:-12.5194,0,-12.2168	1/1:100:0,100:0:0:100:3531:-234.489,-30.103,0	0/1:85:46,39:46:1648:39:1373:-63.9439,0,-108.689	1/1:131:0,131:0:0:131:4660:-327.022,-39.4349,0	1/1:213:0,213:0:0:213:7538:-575.097,-64.1194,0	0/1:121:63,58:63:2239:58:2034:-99.1894,0,-144.925	1/1:98:0,98:0:0:98:3484:-230.132,-29.5009,0	1/1:12:0,12:0:0:12:432:-28.5397,-3.61236,0	1/1:121:1,120:1:36:120:4218:-296.93,-33.037,0	1/1:148:0,148:0:0:148:5189:-338.87,-44.5524,0	1/1:203:0,202:0:0:202:7148:-545.559,-60.8081,0	1/1:46:0,46:0:0:46:1598:-122.823,-13.8474,0	0/1:70:33,37:33:1165:37:1290:-77.9202,0,-78.8396	0/1:27:14,13:14:496:13:464:-27.4062,0,-34.4356	0/1:116:51,65:51:1820:65:2286:-141.278,0,-121.469	1/1:19:0,19:0:0:19:672:-45.372,-5.71957,0	1/1:47:0,47:0:0:47:1634:-109.383,-14.1484,0	1/1:55:0,55:0:0:55:1956:-127.378,-16.5567,0	0/1:45:26,19:26:927:19:671:-34.5865,0,-64.6827	0/1:99:53,46:53:1867:46:1610:-84.0822,0,-128.554	0/1:63:50,13:50:1796:13:460:-15.6827,0,-136.058	1/1:193:0,193:0:0:193:6781:-517.541,-58.0988,0	1/1:84:0,84:0:0:84:2953:-224.073,-25.2865,0
chr07	20530258	.	AATG	GATC,AATC	118862	PASS	AB=0.490094,0.506083;ABP=5.46255,3.93489;AC=142,46;AF=0.755319,0.244681;AN=188;AO=4472,1465;CIGAR=1X2M1X,3M1X;DP=5961;DPB=5965;DPRA=0,1.07412;EPP=9713.83,3184.22;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.80851,2.22222;MQM=41.1758,54.0061;MQMR=0;NS=94;NUMALT=2;ODDS=0.641455;PAIRED=0,0;PAIREDR=0;PAO=11,2.5;PQA=388,0;PQR=0;PRO=2.5;QA=155525,51619;QR=0;RO=0;RPL=4472,1465;RPP=9713.83,3184.22;RPPR=0;RPR=0,0;RUN=1,1;SAF=4472,1465;SAP=9713.83,3184.22;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,15,1:0:0:15,1:517,36:-45.1524,-4.51545,0,-42.2216,-1.22725,-41.9206	1/2:42:0,23,18:0:0:23,18:796,648:-113.982,-52.6937,-45.77,-61.2758,0,-55.8573	1/2:141:0,76,65:0:0:76,65:2645,2300:-393.95,-186.973,-164.095,-207.322,0,-187.755	1/2:136:0,74,62:0:0:74,62:2566,2183:-380.087,-177.682,-155.406,-202.75,0,-184.086	1/1:35:0,35,0:0:0:35,0:1230,0:-106.651,-10.5361,0,-106.651,-10.5361,-106.651	1/1:31:0,31,0:0:0:31,0:1095,0:-95.0764,-9.33193,0,-95.0764,-9.33193,-95.0764	1/1:69:0,68,1:0:0:68,1:2342,36:-205.346,-20.47,0,-202.41,-17.5042,-202.109	1/1:103:0,103,0:0:0:103,0:3602,0:-312.948,-31.0061,0,-312.948,-31.0061,-312.948	1/1:38:0,37,0:0:0:37,0:1294,0:-111.111,-11.1381,0,-111.111,-11.1381,-111.111	1/2:46:0,29,17:0:0:29,17:1035,608:-131.88,-49.896,-41.1661,-82.3378,0,-77.2203	1/1:50:0,50,0:0:0:50,0:1769,0:-155.123,-15.0515,0,-155.123,-15.0515,-155.123	1/2:65:0,25,40:0:0:25,40:835,1391:-178.607,-112.926,-105.4,-66.0146,0,-53.9734	1/2:65:0,28,36:0:0:28,36:983,1288:-181.974,-104.522,-96.0932,-77.451,0,-66.6139	1/2:44:0,23,21:0:0:23,21:787,722:-118.211,-58.5428,-51.6191,-59.6463,0,-53.3247	1/2:48:0,23,25:0:0:23,25:802,888:-135.403,-72.4195,-65.4958,-63.329,0,-55.8033	1/1:38:0,38,0:0:0:38,0:1339,0:-115.963,-11.4391,0,-115.963,-11.4391,-115.963	1/1:28:0,28,0:0:0:28,0:951,0:-82.0545,-8.42884,0,-82.0545,-8.42884,-82.0545	1/1:22:0,22,0:0:0:22,0:775,0:-67.6217,-6.62266,0,-67.6217,-6.62266,-67.6217	1/2:20:0,11,9:0:0:11,9:371,320:-55.5371,-26.3616,-23.0502,-29.5182,0,-26.809	1/2:151:0,75,76:0:0:75,76:2574,2710:-421.59,-219.759,-197.182,-202.174,0,-179.296	1/1:61:0,61,0:0:0:61,0:2109,0:-182.977,-18.3628,0,-182.977,-18.3628,-182.977	1/1:73:0,72,0:0:0:72,0:2515,0:-220.517,-21.6742,0,-220.517,-21.6742,-220.517	1/1:49:0,47,2:0:0:47,2:1641,68:-143.521,-14.1484,0,-138.009,-8.29621,-137.407	1/1:41:0,41,0:0:0:41,0:1445,0:-125.555,-12.3422,0,-125.555,-12.3422,-125.555	1/2:59:0,26,33:0:0:26,33:906,1176:-166.534,-95.6908,-87.864,-71.1874,0,-61.2534	1/2:147:0,83,63:0:0:83,63:2842,2208:-405.562,-179.543,-154.558,-226.02,0,-207.055	1/1:149:0,148,1:0:0:148,1:5167,36:-443.516,-44.5524,0,-440.583,-41.2603,-440.282	1/1:22:0,22,0:0:0:22,0:764,0:-66.332,-6.62266,0,-66.332,-6.62266,-66.332	1/2:161:0,72,89:0:0:72,89:2508,3159:-456.108,-256.71,-235.036,-199.389,0,-172.597	1/2:66:0,40,26:0:0:40,26:1356,932:-182.058,-76.2478,-64.2066,-106.156,0,-98.3294	1/1:62:0,62,0:0:0:62,0:2178,0:-190.418,-18.6639,0,-190.418,-18.6639,-190.418	1/2:11:0,7,4:0:0:7,4:245,144:-31.2335,-12.0906,-9.98341,-19.4943,0,-18.2901	1/1:12:0,12,0:0:0:12,0:411,0:-36.0376,-3.61236,0,-36.0376,-3.61236,-36.0376	1/1:5:0,5,0:0:0:5,0:168,0:-15.0784,-1.50515,0,-15.0784,-1.50515,-15.0784	1/2:8:0,5,3:0:0:5,3:172,104:-22.3305,-8.77944,-7.27429,-13.8928,0,-12.9897	1/2:28:0,12,16:0:0:12,16:427,568:-80.1313,-46.5166,-42.9043,-33.9634,0,-29.1469	1/1:149:0,147,0:0:0:147,0:5170,0:-455.58,-44.2514,0,-455.58,-44.2514,-455.58	1/2:49:0,23,25:0:0:23,25:801,891:-134.339,-72.4464,-65.5227,-61.9535,0,-54.4277	1/2:48:0,27,19:0:0:27,19:957,659:-128.064,-53.3843,-45.2565,-74.6726,0,-68.953	1/1:1:0,1,0:0:0:1,0:36,0:-3.45449,-0.30103,0,-3.45449,-0.30103,-3.45449	1/2:94:0,45,49:0:0:45,49:1567,1745:-262.432,-142.365,-128.819,-120.409,0,-105.658	1/2:16:0,10,6:0:0:10,6:355,216:-45.7061,-17.9563,-14.946,-28.1027,0,-26.2965	1/2:150:0,62,87:0:0:62,87:2171,2976:-410.224,-241.086,-222.422,-169.171,0,-142.981	1/2:34:0,18,16:0:0:18,16:643,559:-95.3256,-45.6924,-40.2738,-49.9776,0,-45.1611	1/2:51:0,20,31:0:0:20,31:685,1078:-141.635,-87.9147,-81.8941,-54.0587,0,-44.7268	1/1:89:0,88,0:0:0:88,0:3072,0:-270.952,-26.4906,0,-270.952,-26.4906,-270.952	1/1:96:0,96,0:0:0:96,0:3309,0:-288.237,-28.8989,0,-288.237,-28.8989,-288.237	1/2:148:0,70,78:0:0:70,78:2392,2707:-408.676,-220.002,-198.93,-189.013,0,-165.532	1/1:107:0,107,0:0:0:107,0:3668,0:-321.681,-32.2102,0,-321.681,-32.2102,-321.681	1/1:63:0,61,1:0:0:61,1:2128,32:-186.845,-18.3628,0,-184.267,-15.7729,-183.966	1/1:122:0,121,1:0:0:121,1:4194,36:-368.123,-36.4246,0,-365.187,-33.1284,-364.885	1/2:12:0,2,10:0:0:2,10:72,360:-35.2553,-29.6258,-29.0237,-5.97793,0,-2.96763	1/2:100:0,47,53:0:0:47,53:1612,1874:-278.263,-152.556,-138.408,-126.047,0,-110.093	1/1:79:0,77,1:0:0:77,1:2689,36:-235.995,-23.1793,0,-233.058,-20.2341,-232.757	1/2:7:0,3,4:0:0:3,4:98,135:-18.9619,-11.2465,-10.3434,-8.04217,0,-6.83805	1/2:85:0,47,38:0:0:47,38:1617,1330:-234.669,-108.281,-94.1323,-126.73,0,-115.29	1/2:22:0,13,9:0:0:13,9:450,320:-61.8783,-26.2438,-22.3304,-35.9815,0,-33.2722	1/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chr07	20768516	.	AGCG	AGCA	33236.6	PASS	AB=0.464679;ABP=50.2568;AC=46;AF=0.244681;AN=188;AO=2035;CIGAR=3M1X;DP=9255;DPB=9255;DPRA=0.923229;EPP=4421.96;EPPR=15505.3;GTI=3;LEN=1;MEANALT=1.40741;MQM=59.6093;MQMR=59.9161;NS=94;NUMALT=1;ODDS=0.432704;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72809;QR=254249;RO=7187;RPL=0;RPP=4421.96;RPPR=15514;RPR=2035;RUN=1;SAF=2035;SAP=4421.96;SAR=0;SRF=7186;SRP=15600.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:19,5:19:684:5:180:-9.32734,0,-54.6656	0/1:133:91,41:91:3228:41:1464:-91.957,0,-250.646	0/1:148:91,57:91:3222:57:2036:-138.934,0,-245.653	0/1:164:90,74:90:3213:74:2609:-185.496,0,-239.937	0/0:110:110,0:110:3864:0:0:0,-33.1133,-347.958	0/0:52:52,0:52:1840:0:0:0,-15.6536,-165.879	0/0:137:137,0:137:4863:0:0:0,-41.2411,-437.828	0/0:135:134,0:134:4731:0:0:0,-40.338,-425.532	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.325	0/1:40:24,14:24:852:14:504:-33.8584,0,-65.2016	0/0:62:61,1:61:2144:1:36:0,-15.0656,-189.628	0/1:73:35,38:35:1238:38:1356:-100.349,0,-89.7483	0/1:82:38,43:38:1335:43:1548:-114.837,0,-95.7065	0/1:77:34,42:34:1210:42:1500:-112.048,0,-85.9683	0/1:79:39,40:39:1392:40:1428:-105.036,0,-101.798	0/0:44:44,0:44:1578:0:0:0,-13.2453,-142.308	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.871	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.192	0/1:51:18,33:18:645:33:1188:-91.8761,0,-43.0286	0/1:175:92,83:92:3214:83:2972:-215.019,0,-236.801	0/0:98:96,0:96:3393:0:0:0,-28.8989,-305.224	0/0:108:107,0:107:3784:0:0:0,-32.2102,-340.397	0/0:78:74,2:74:2639:2:72:0,-16.4014,-230.921	0/0:103:101,1:101:3592:1:36:0,-27.4666,-319.889	0/1:79:46,33:46:1603:33:1180:-82.7221,0,-120.774	0/1:341:199,142:199:6952:142:5092:-355.631,0,-523.1	0/0:278:277,0:277:9757:0:0:0,-83.3853,-877.158	0/0:24:24,0:24:863:0:0:0,-7.22472,-77.9925	0/1:322:143,178:143:5047:178:6367:-476.093,0,-357.221	0/1:135:75,59:75:2651:59:2097:-148.299,0,-198.158	0/0:130:129,1:129:4566:1:36:0,-35.5356,-407.454	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5933	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.379	0/1:3:2,1:2:64:1:36:-2.69518,0,-5.17501	0/0:151:151,0:151:5356:0:0:0,-45.4555,-482.177	0/1:262:140,121:140:4939:121:4316:-309.44,0,-365.736	0/1:82:46,36:46:1622:36:1296:-92.2431,0,-121.575	0/0:1:1,0:1:24:0:0:0,-0.30103,-2.39989	0/1:125:59,66:59:2104:66:2368:-175.727,0,-152.001	0/1:43:15,28:15:539:28:996:-77.006,0,-35.9019	0/1:91:61,30:61:2166:30:1080:-70.1103,0,-167.813	0/1:48:24,24:24:860:24:864:-63.6047,0,-63.2724	0/1:57:31,23:31:1087:23:828:-58.2357,0,-81.5312	0/0:91:89,1:89:3169:1:36:0,-23.8111,-281.878	0/0:134:134,0:134:4752:0:0:0,-40.338,-427.804	0/1:185:93,90:93:3290:90:3220:-234.501,0,-240.691	0/0:115:115,0:115:4038:0:0:0,-34.6184,-363.611	0/0:160:160,0:160:5661:0:0:0,-48.1648,-509.617	0/0:148:147,0:147:5227:0:0:0,-44.2514,-470.212	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:161:89,72:89:3172:72:2580:-183.597,0,-237.239	0/0:80:80,0:80:2830:0:0:0,-24.0824,-254.939	0/1:23:14,9:14:486:9:320:-22.2187,0,-37.1451	0/1:166:115,51:115:4067:51:1824:-114.47,0,-316.005	0/1:39:27,12:27:962:12:424:-26.7342,0,-75.1565	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:26:26,0:26:904:0:0:0,-7.82678,-81.6729	0/0:72:72,0:72:2552:0:0:0,-21.6742,-229.927	0/0:122:119,1:119:4226:1:36:0,-32.8852,-376.924	0/0:1:1,0:1:35:0:0:0,-0.30103,-3.49863	0/0:238:238,0:238:8391:0:0:0,-71.6451,-755.203	0/0:179:179,0:179:6348:0:0:0,-53.8844,-571.416	0/1:50:21,28:21:753:28:1008:-75.9214,0,-52.983	0/0:97:97,0:97:3438:0:0:0,-29.1999,-309.635	0/1:200:113,85:113:3970:85:3048:-214.549,0,-297.271	0/1:70:24,46:24:849:46:1644:-126.985,0,-55.6579	0/1:27:17,10:17:603:10:352:-23.8904,0,-46.4724	0/0:81:80,1:80:2845:1:36:0,-20.7852,-252.691	0/1:100:44,56:44:1563:56:2004:-150.53,0,-110.858	0/1:15:7,8:7:252:8:280:-21.0239,0,-18.5135	0/0:126:126,0:126:4466:0:0:0,-37.9298,-402.114	0/1:43:22,21:22:777:21:756:-55.4229,0,-57.3076	0/0:147:147,0:147:5176:0:0:0,-44.2514,-465.979	0/0:234:234,0:234:8340:0:0:0,-70.441,-750.592	0/1:121:65,56:65:2279:56:2000:-143.841,0,-168.945	0/0:108:107,1:107:3784:1:36:0,-28.913,-337.154	0/0:3:3,0:3:102:0:0:0,-0.90309,-9.51638	0/0:153:152,0:152:5381:0:0:0,-45.7566,-484.162	0/0:134:134,0:134:4716:0:0:0,-40.338,-424.605	0/0:241:240,0:240:8471:0:0:0,-72.2472,-762.046	0/0:93:92,0:92:3261:0:0:0,-27.6948,-293.352	0/1:60:27,32:27:961:32:1152:-85.8125,0,-68.6873	0/1:67:34,33:34:1194:33:1184:-86.6947,0,-87.5943	0/1:131:56,75:56:1996:75:2696:-203.433,0,-140.479	0/0:34:34,0:34:1195:0:0:0,-10.235,-107.855	0/0:60:60,0:60:2087:0:0:0,-18.0618,-188.082	0/0:73:73,0:73:2591:0:0:0,-21.9752,-233.439	0/1:65:37,28:37:1319:28:1004:-71.1043,0,-99.444	0/1:124:65,59:65:2298:59:2104:-152.274,0,-169.752	0/1:57:20,36:20:711:36:1292:-99.3575,0,-47.1443	0/0:126:126,0:126:4436:0:0:0,-37.9298,-399.415	0/0:89:89,0:89:3169:0:0:0,-26.7917,-285.391
chr07	20768536	.	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chr07	20768553	.	A	C	31742.4	PASS	AB=0.466342;ABP=45.4014;AC=46;AF=0.244681;AN=188;AO=2015;CIGAR=1X;DP=9134;DPB=9134;DPRA=0.936668;EPP=4378.53;EPPR=15455.2;GTI=3;LEN=1;MEANALT=1;MQM=59.594;MQMR=59.9185;NS=94;NUMALT=1;ODDS=0.519498;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70695;QR=253880;RO=7116;RPL=2015;RPP=4378.53;RPPR=15455.2;RPR=0;RUN=1;SAF=2015;SAP=4378.53;SAR=0;SRF=7116;SRP=15455.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:20,5:20:716:5:171:-8.1997,0,-57.2338	0/1:128:88,40:88:3144:40:1403:-88.0312,0,-244.654	0/1:147:91,56:91:3260:56:1949:-131.408,0,-249.369	0/1:161:87,74:87:3107:74:2599:-185.658,0,-231.391	0/0:109:109,0:109:3886:0:0:0,-32.8123,-349.935	0/0:53:52,0:52:1848:0:0:0,-15.6536,-166.237	0/0:134:134,0:134:4750:0:0:0,-40.338,-427.662	0/0:131:130,0:130:4631:0:0:0,-39.1339,-416.364	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.864	0/1:40:25,15:25:879:15:513:-34.4098,0,-67.3822	0/0:62:62,0:62:2195:0:0:0,-18.6639,-197.815	0/1:73:35,38:35:1242:38:1309:-96.1202,0,-90.1079	0/1:81:38,43:38:1355:43:1492:-110.153,0,-97.8581	0/1:75:34,41:34:1203:41:1417:-105.236,0,-85.9978	0/1:77:39,38:39:1404:38:1356:-99.1612,0,-103.48	0/0:44:43,0:43:1535:0:0:0,-12.9443,-138.118	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.874	0/1:50:17,33:17:612:33:1142:-88.0324,0,-40.3619	0/1:174:91,83:91:3256:83:2917:-210.374,0,-240.853	0/0:95:95,0:95:3394:0:0:0,-28.5978,-305.672	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.289	0/0:78:76,2:76:2724:2:68:0,-17.0226,-238.945	0/0:103:102,1:102:3648:1:36:0,-27.4078,-324.925	0/1:78:46,32:46:1636:32:1135:-78.9731,0,-124.048	0/1:333:196,137:196:7020:137:4842:-335.644,0,-531.57	0/0:269:269,0:269:9586:0:0:0,-80.9771,-862.064	0/0:23:23,0:23:806:0:0:0,-6.92369,-72.8582	0/1:316:142,174:142:5060:174:6142:-457.682,0,-359.766	0/1:135:75,60:75:2677:60:2127:-151.038,0,-200.53	0/0:129:129,0:129:4611:0:0:0,-38.8329,-415.067	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:149:149,0:149:5309:0:0:0,-44.8535,-477.946	0/1:260:139,121:139:4984:121:4276:-306.629,0,-370.439	0/1:82:45,37:45:1595:37:1294:-92.0506,0,-119.147	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:124:58,66:58:2076:66:2347:-174.143,0,-149.783	0/1:45:15,30:15:532:30:1038:-80.1741,0,-34.6667	0/1:91:61,30:61:2172:30:1024:-65.0593,0,-168.353	0/1:48:24,24:24:856:24:840:-61.4403,0,-62.9117	0/1:55:30,25:30:1068:25:880:-62.928,0,-79.8754	0/0:89:88,1:88:3139:1:36:0,-23.1934,-278.86	0/0:134:134,0:134:4767:0:0:0,-40.338,-429.144	0/1:181:94,87:94:3368:87:3057:-220.654,0,-248.74	0/0:114:114,0:114:4060:0:0:0,-34.3174,-365.583	0/0:159:159,0:159:5683:0:0:0,-47.8638,-511.589	0/0:146:146,0:146:5232:0:0:0,-43.9504,-471.017	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:158:87,71:87:3090:71:2483:-176.144,0,-230.766	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/1:23:14,9:14:504:9:316:-21.8552,0,-38.7744	0/1:166:115,51:115:4120:51:1802:-112.489,0,-320.629	0/1:39:27,12:27:955:12:425:-26.8289,0,-74.5247	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.56	0/0:122:121,1:121:4315:1:36:0,-33.1274,-384.929	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:233:233,0:233:8339:0:0:0,-70.14,-750.5	0/0:177:177,0:177:6314:0:0:0,-53.2823,-568.353	0/1:50:22,28:22:775:28:1000:-75.2593,0,-55.0163	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453	0/1:200:112,88:112:3970:88:3079:-217.109,0,-297.286	0/1:68:24,44:24:864:44:1521:-116.516,0,-57.6125	0/1:27:17,10:17:612:10:348:-23.5273,0,-47.2856	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/1:100:44,56:44:1580:56:1951:-145.757,0,-112.389	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/0:127:127,0:127:4531:0:0:0,-38.2308,-407.93	0/1:43:22,21:22:788:21:752:-55.062,0,-58.3005	0/0:145:145,0:145:5204:0:0:0,-43.6493,-468.428	0/0:231:231,0:231:8238:0:0:0,-69.5379,-741.427	0/1:118:63,55:63:2218:55:1942:-139.525,0,-164.36	0/0:107:106,1:106:3760:1:36:0,-28.6119,-334.98	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:149:149,0:149:5313:0:0:0,-44.8535,-478.283	0/0:133:133,0:133:4744:0:0:0,-40.037,-427.12	0/0:238:238,0:238:8478:0:0:0,-71.6451,-763.012	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.53	0/1:58:28,30:28:1000:30:1038:-76.2262,0,-72.8419	0/1:66:34,32:34:1215:32:1102:-79.6168,0,-89.7869	0/1:130:56,74:56:1996:74:2618:-196.719,0,-140.78	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:58:58,0:58:2034:0:0:0,-17.4597,-183.315	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.359	0/1:66:37,29:37:1311:29:1005:-70.8884,0,-98.4229	0/1:123:64,59:64:2283:59:2030:-145.921,0,-168.705	0/1:55:20,35:20:694:35:1229:-94.2882,0,-46.2237	0/0:121:121,0:121:4328:0:0:0,-36.4246,-389.696	0/0:89:89,0:89:3149:0:0:0,-26.7917,-283.58
chr07	20971971	.	A	T	79998.8	PASS	AB=0.48786;ABP=6.43745;AC=140;AF=0.752688;AN=186;AO=3854;CIGAR=1X;DP=5229;DPB=5229;DPRA=0;EPP=8371.86;EPPR=2986.61;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.6217;MQMR=59.9672;NS=93;NUMALT=1;ODDS=2.14583;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137149;QR=49228;RO=1374;RPL=3854;RPP=8371.86;RPPR=2986.61;RPR=0;RUN=1;SAF=0;SAP=8371.86;SAR=3854;SRF=0;SRP=2986.61;SRR=1374;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:15,14:15:540:14:500:-36.6063,0,-40.2067	0/1:36:16,20:16:572:20:667:-49.5016,0,-40.9763	0/1:112:56,56:56:2003:56:1988:-145.471,0,-146.827	0/1:174:88,86:88:3136:86:3057:-222.959,0,-230.083	1/1:18:0,18:0:0:18:621:-56.2079,-5.41854,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:58:0,58:0:0:58:2049:-184.676,-17.4597,0	1/1:89:0,89:0:0:89:3192:-287.423,-26.7917,0	1/1:59:0,59:0:0:59:2116:-190.378,-17.7608,0	0/1:57:29,28:29:1029:28:989:-72.1609,0,-75.7624	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	0/1:112:48,64:48:1713:64:2289:-172.533,0,-120.735	0/1:97:61,36:61:2192:36:1296:-87.6345,0,-168.345	0/1:44:19,25:19:684:25:896:-67.715,0,-48.645	0/1:94:48,46:48:1724:46:1625:-118.235,0,-127.149	1/1:54:0,54:0:0:54:1930:-173.941,-16.2556,0	1/1:43:0,43:0:0:43:1533:-138.254,-12.9443,0	1/1:32:0,32:0:0:32:1141:-102.749,-9.63296,0	0/1:28:15,13:15:536:13:464:-33.6653,0,-40.146	0/1:40:26,14:26:936:14:500:-32.5097,0,-72.5174	1/1:116:0,116:0:0:116:4104:-369.513,-34.9195,0	1/1:15:1,14:1:36:14:489:-40.7388,-0.917175,0	1/1:41:0,41:0:0:41:1446:-130.422,-12.3422,0	1/1:13:0,13:0:0:13:464:-42.0929,-3.91339,0	0/1:22:12,10:12:432:10:345:-24.7582,0,-32.5985	0/1:94:45,49:45:1612:49:1752:-129.663,0,-117.073	1/1:139:0,139:0:0:139:4912:-442.207,-41.8432,0	1/1:40:1,39:1:36:39:1400:-122.692,-8.44293,0	0/1:122:72,50:72:2569:50:1772:-123.034,0,-194.733	0/1:47:20,27:20:716:27:968:-73.1498,0,-50.6193	1/1:37:0,37:0:0:37:1324:-119.46,-11.1381,0	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:13:9,4:9:324:4:144:-9.3968,0,-25.5925	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:175:0,175:0:0:175:6273:-564.599,-52.6803,0	0/1:36:17,19:17:608:19:646:-47.618,0,-44.2149	0/1:63:40,23:40:1436:23:820:-55.1576,0,-110.573	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:70:33,37:33:1184:37:1332:-99.1103,0,-85.7962	0/1:42:19,23:19:684:23:809:-60.4756,0,-49.2424	0/1:39:21,18:21:752:18:640:-46.1694,0,-56.2661	0/1:59:32,27:32:1148:27:964:-69.3137,0,-85.8691	0/1:54:29,25:29:1036:25:890:-64.1375,0,-77.2983	1/1:63:0,63:0:0:63:2260:-203.658,-18.9649,0	1/1:26:0,26:0:0:26:917:-82.7374,-7.82678,0	0/1:106:59,47:59:2120:47:1688:-120.295,0,-159.159	1/1:74:0,74:0:0:74:2618:-235.772,-22.2762,0	1/1:82:2,80:2:72:80:2838:-248.704,-17.8477,0	1/1:33:0,33:0:0:33:1180:-106.493,-9.93399,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:41:10,31:10:360:31:1106:-87.5057,0,-20.4021	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:82:33,49:33:1184:49:1756:-133.609,0,-82.054	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:5:1,4:1:36:4:144:-11.75,0,-2.09312	1/1:16:0,16:0:0:16:568:-51.4515,-4.81648,0	1/1:70:0,70:0:0:70:2483:-223.707,-21.0721,0	1/1:81:0,81:0:0:81:2889:-259.608,-24.3834,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:82:0,82:0:0:82:2931:-263.991,-24.6845,0	1/1:61:0,61:0:0:61:2184:-196.819,-18.3628,0	0/1:53:26,27:26:936:27:945:-69.3959,0,-68.6049	1/1:45:0,45:0:0:45:1569:-141.492,-13.5464,0	0/1:77:32,45:32:1152:45:1575:-118.842,0,-80.8108	0/1:91:64,27:64:2277:27:972:-60.4018,0,-177.797	0/1:47:33,14:33:1184:14:500:-31.1693,0,-92.7199	1/1:38:0,38:0:0:38:1341:-120.988,-11.4391,0	0/1:36:14,22:14:496:22:784:-60.0395,0,-34.1372	0/1:28:17,11:17:612:11:384:-26.4658,0,-46.9846	1/1:63:0,63:0:0:63:2264:-203.895,-18.9649,0	0/1:99:43,56:43:1525:56:1996:-150.111,0,-107.735	1/1:55:0,55:0:0:55:1976:-178.082,-16.5567,0	1/1:60:0,60:0:0:60:2113:-190.425,-18.0618,0	0/1:16:11,5:11:396:5:180:-11.7352,0,-31.1663	1/1:76:0,76:0:0:76:2694:-242.614,-22.8783,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:55:0,55:0:0:55:1968:-177.261,-16.5567,0	1/1:52:0,52:0:0:52:1845:-166.317,-15.6536,0	1/1:107:0,107:0:0:107:3767:-339.179,-32.2102,0	1/1:46:0,46:0:0:46:1637:-147.599,-13.8474,0	0/1:77:41,36:41:1476:36:1280:-92.2591,0,-109.957	0/1:39:17,22:17:608:22:780:-58.7829,0,-43.3119	0/1:144:72,71:72:2592:71:2548:-186.159,0,-190.121	1/1:27:0,27:0:0:27:957:-86.4405,-8.12781,0	1/1:56:0,56:0:0:56:2012:-181.315,-16.8577,0	1/1:77:0,77:0:0:77:2764:-248.976,-23.1793,0	0/1:41:15,26:15:540:26:928:-71.4954,0,-36.5943	0/1:83:38,45:38:1368:45:1599:-119.196,0,-98.4353	0/1:90:60,30:60:2152:30:1053:-67.9788,0,-166.855	1/1:78:0,78:0:0:78:2788:-251.152,-23.4803,0	1/1:101:0,101:0:0:101:3616:-325.55,-30.404,0
chr07	20976813	.	GATT	TATC,GATC	135058	PASS	AB=0.552843,0.445335;ABP=69.5631,74.2321;AC=140,48;AF=0.744681,0.255319;AN=188;AO=5038,1226;CIGAR=1X2M1X,3M1X;DP=6282;DPB=6282.25;DPRA=33.7634,0.854584;EPP=10942.9,2665.24;EPPR=0;GTI=6;LEN=4,1;MEANALT=1.69892,2.12245;MQM=59.3801,59.3369;MQMR=0;NS=94;NUMALT=2;ODDS=1.19614;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=179105,43914;QR=0;RO=0;RPL=0,0;RPP=10942.9,2665.24;RPPR=0;RPR=5038,1226;RUN=1,1;SAF=5038,1226;SAP=10942.9,2665.24;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:16:0,10,6:0:0:10,6:350,216:-46.453,-17.9843,-14.974,-28.8248,0,-27.0186	1/2:105:0,54,51:0:0:54,51:1933,1832:-307.427,-149.807,-133.551,-157.979,0,-142.627	1/2:75:0,39,36:0:0:39,36:1376,1288:-217.421,-105.387,-93.6463,-112.389,0,-101.552	1/2:88:0,41,46:0:0:41,46:1448,1652:-252.496,-134.627,-122.284,-117.866,0,-104.018	1/1:24:0,23,0:0:0:23,0:827,0:-74.3138,-6.92369,0,-74.3138,-6.92369,-74.3138	1/1:51:0,51,0:0:0:51,0:1827,0:-164.475,-15.3525,0,-164.475,-15.3525,-164.475	1/1:111:0,111,0:0:0:111,0:3957,0:-355.875,-33.4143,0,-355.875,-33.4143,-355.875	1/1:114:0,114,0:0:0:114,0:4032,0:-362.698,-34.3174,0,-362.698,-34.3174,-362.698	1/1:84:0,84,0:0:0:84,0:2991,0:-269.356,-25.2865,0,-269.356,-25.2865,-269.356	1/2:93:0,56,37:0:0:56,37:1992,1328:-269.52,-108.011,-91.1537,-161.864,0,-150.726	1/1:36:0,36,0:0:0:36,0:1280,0:-115.485,-10.8371,0,-115.485,-10.8371,-115.485	1/2:51:0,23,28:0:0:23,28:827,1000:-149.314,-81.8414,-74.9177,-67.8303,0,-59.4015	1/2:67:0,32,35:0:0:32,35:1144,1256:-195.156,-101.912,-92.2788,-93.6004,0,-83.0643	1/2:60:0,35,24:0:0:35,24:1246,860:-171.693,-70.1421,-59.6061,-101.553,0,-94.3286	1/2:46:0,30,16:0:0:30,16:1067,576:-134.256,-47.3585,-38.3276,-87.2561,0,-82.4396	1/1:38:0,37,0:0:0:37,0:1299,0:-116.815,-11.1381,0,-116.815,-11.1381,-116.815	1/1:57:0,57,0:0:0:57,0:2029,0:-182.837,-17.1587,0,-182.837,-17.1587,-182.837	1/1:41:0,40,0:0:0:40,0:1400,0:-125.994,-12.0412,0,-125.994,-12.0412,-125.994	1/2:11:0,8,3:0:0:8,3:288,108:-32.6262,-9.17208,-6.76384,-23.8138,0,-22.9107	1/2:76:0,36,40:0:0:36,40:1274,1432:-220.785,-117.09,-106.253,-104.051,0,-92.0097	1/1:89:0,89,0:0:0:89,0:3150,0:-283.684,-26.7917,0,-283.684,-26.7917,-283.684	1/1:53:0,52,0:0:0:52,0:1839,0:-165.385,-15.6536,0,-165.385,-15.6536,-165.385	1/1:63:0,63,0:0:0:63,0:2236,0:-201.451,-18.9649,0,-201.451,-18.9649,-201.451	1/1:100:0,98,0:0:0:98,0:3488,0:-313.375,-29.5009,0,-313.375,-29.5009,-313.375	1/2:31:0,14,17:0:0:14,17:503,612:-91.1945,-50.2058,-45.9914,-41.3477,0,-36.2302	1/2:198:0,112,86:0:0:112,86:3972,3088:-574.985,-251.454,-217.739,-323.887,0,-297.999	1/1:181:0,179,0:0:0:179,0:6358,0:-571.075,-53.8844,0,-571.075,-53.8844,-571.075	1/1:21:0,21,0:0:0:21,0:755,0:-68.232,-6.32163,0,-68.232,-6.32163,-68.232	1/2:110:0,60,50:0:0:60,50:2140,1796:-321.269,-146.826,-128.764,-174.801,0,-159.749	1/2:141:0,83,58:0:0:83,58:2969,2072:-409.951,-168.529,-143.543,-241.778,0,-224.318	1/1:92:0,92,0:0:0:92,0:3286,0:-295.702,-27.6948,0,-295.702,-27.6948,-295.702	1/2:4:0,1,3:0:0:1,3:36,104:-11.7403,-8.79955,-8.49852,-3.29724,0,-2.39415	1/1:2:0,2,0:0:0:2,0:65,0:-6.17303,-0.60206,0,-6.17303,-0.60206,-6.17303	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	2/2:2:0,0,2:0:0:0,2:0,72:-6.8363,-6.8363,-6.8363,-0.60206,-0.60206,0	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/1:186:0,185,0:0:0:185,0:6634,0:-596.585,-55.6906,0,-596.585,-55.6906,-596.585	1/2:147:0,92,55:0:0:92,55:3235,1968:-424.012,-160.793,-133.098,-263.575,0,-247.018	1/2:33:0,13,20:0:0:13,20:468,716:-96.8411,-58.7021,-54.7887,-38.4977,0,-32.4771	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/2:49:0,31,18:0:0:31,18:1092,648:-141.993,-53.1432,-43.8113,-89.2061,0,-83.7876	1/2:15:0,8,7:0:0:8,7:278,252:-43.4933,-20.9217,-18.5135,-22.9254,0,-20.8182	1/2:101:0,54,47:0:0:54,47:1934,1680:-294.999,-137.331,-121.075,-158.026,0,-143.878	1/2:53:0,36,17:0:0:36,17:1272,604:-153.054,-49.5731,-38.736,-103.835,0,-98.7173	1/2:45:0,25,20:0:0:25,20:864,720:-129.298,-59.1082,-51.5824,-70.5429,0,-64.5223	1/1:119:0,119,0:0:0:119,0:4233,0:-380.846,-35.8226,0,-380.846,-35.8226,-380.846	1/1:74:0,74,0:0:0:74,0:2625,0:-236.336,-22.2762,0,-236.336,-22.2762,-236.336	1/2:108:0,55,53:0:0:55,53:1944,1894:-313.043,-154.759,-138.203,-158.639,0,-142.685	1/1:68:0,68,0:0:0:68,0:2431,0:-218.875,-20.47,0,-218.875,-20.47,-218.875	1/1:79:0,79,0:0:0:79,0:2819,0:-253.914,-23.7814,0,-253.914,-23.7814,-253.914	1/1:99:0,99,0:0:0:99,0:3534,0:-318.16,-29.802,0,-318.16,-29.802,-318.16	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:80:0,46,34:0:0:46,34:1651,1220:-234.482,-99.858,-86.0106,-134.983,0,-124.748	1/1:41:0,41,0:0:0:41,0:1454,0:-131.156,-12.3422,0,-131.156,-12.3422,-131.156	1/2:3:0,2,1:0:0:2,1:71,36:-9.07908,-3.29724,-2.69518,-6.14,0,-5.83897	1/2:57:0,30,27:0:0:30,27:1066,968:-166.082,-79.263,-70.2321,-87.1761,0,-79.0483	1/2:48:0,31,17:0:0:31,17:1097,604:-138.881,-49.5731,-40.2412,-89.6629,0,-84.5454	1/2:5:0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chr07	20976846	.	T	C	18456.8	PASS	AB=0.449216;ABP=63.0007;AC=48;AF=0.255319;AN=188;AO=1210;CIGAR=1X;DP=6092;DPB=6092;DPRA=0.948988;EPP=2630.49;EPPR=10602;GTI=6;LEN=1;MEANALT=1.01923;MQM=59.2413;MQMR=59.454;NS=94;NUMALT=1;ODDS=1.65152;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42508;QR=174118;RO=4881;RPL=1210;RPP=2630.49;RPPR=10602;RPR=0;RUN=1;SAF=1210;SAP=2630.49;SAR=0;SRF=4881;SRP=10602;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:10,6:10:352:6:216:-14.974,0,-27.1994	0/1:101:52,49:52:1864:49:1721:-124.767,0,-137.635	0/1:74:38,36:38:1360:36:1283:-93.4964,0,-100.416	0/1:84:41,43:41:1472:43:1525:-112.137,0,-107.444	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.1802	0/0:50:50,0:50:1766:0:0:0,-15.0515,-158.984	0/0:107:107,0:107:3791:0:0:0,-32.2102,-341.314	0/0:112:112,0:112:3974:0:0:0,-33.7154,-357.118	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.331	0/1:87:53,34:53:1900:34:1211:-82.4637,0,-144.213	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.206	0/1:51:23,28:23:816:28:951:-70.5326,0,-58.4092	0/1:65:31,34:31:1116:34:1179:-86.5117,0,-81.1398	0/1:59:33,26:33:1166:26:936:-66.7491,0,-87.4848	0/1:44:29,14:29:1036:14:487:-30.8559,0,-80.2049	0/0:38:38,0:38:1346:0:0:0,-11.4391,-121.394	0/0:55:55,0:55:1943:0:0:0,-16.5566,-175.097	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.043	0/1:11:8,3:8:279:3:108:-6.76384,0,-22.0908	0/1:75:35,40:35:1247:40:1387:-102.534,0,-89.7805	0/0:82:81,1:81:2904:1:27:0,-21.9913,-258.893	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.703	0/0:61:61,0:61:2163:0:0:0,-18.3628,-194.89	0/0:94:94,0:94:3357:0:0:0,-28.2968,-302.013	0/1:30:13,17:13:464:17:586:-43.9417,0,-33.021	0/1:191:107,84:107:3827:84:2986:-210.802,0,-287.018	0/0:172:171,1:171:6112:1:36:0,-48.2286,-546.429	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1483	0/1:108:58,50:58:2080:50:1775:-127.476,0,-154.959	0/1:139:82,57:82:2935:57:1999:-138.032,0,-221.86	0/0:89:88,1:88:3144:1:36:0,-23.2432,-279.403	0/1:4:1,3:1:36:3:108:-8.87063,0,-2.39415	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:2:0,2:0:0:2:68:-6.45728,-0.60206,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:182:182,0:182:6499:0:0:0,-54.7875,-584.753	0/1:141:89,52:89:3163:52:1844:-123.747,0,-242.301	0/1:33:12,21:12:432:21:725:-55.5879,0,-29.242	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:48:30,18:30:1044:18:644:-43.751,0,-79.7679	0/1:15:8,7:8:284:7:243:-17.692,0,-21.3406	0/1:100:54,46:54:1900:46:1608:-114.9,0,-141.109	0/1:51:34,17:34:1203:17:599:-38.8405,0,-93.1536	0/1:44:24,20:24:844:20:707:-50.7093,0,-62.9886	0/0:113:113,0:113:4043:0:0:0,-34.0164,-363.983	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.324	0/1:107:55,52:55:1972:52:1815:-131.324,0,-145.43	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.33	0/0:78:78,0:78:2795:0:0:0,-23.4803,-251.736	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.652	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:80:46,34:46:1647:34:1149:-79.6173,0,-124.386	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:56:29,27:29:1013:27:944:-68.3687,0,-74.5767	0/1:47:31,16:31:1099:16:550:-35.6749,0,-85.0261	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:74:74,0:74:2626:0:0:0,-22.2762,-236.495	0/0:115:115,0:115:4090:0:0:0,-34.6184,-368.128	0/1:6:4,2:4:144:2:68:-4.63202,0,-11.5074	0/0:129:129,0:129:4587:0:0:0,-38.8329,-412.872	0/0:176:175,1:175:6266:1:36:0,-49.383,-560.241	0/1:63:48,15:48:1720:15:536:-29.6099,0,-136.092	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:87:43,44:43:1529:44:1545:-113.097,0,-111.577	0/1:52:18,34:18:648:34:1211:-93.6416,0,-42.9901	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.3711	0/0:72:72,0:72:2554:0:0:0,-21.6742,-230.08	0/1:70:38,32:38:1360:32:1122:-80.2142,0,-101.611	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5305	0/0:105:105,0:105:3755:0:0:0,-31.6081,-337.37	0/1:63:33,30:33:1188:30:1067:-77.3763,0,-88.1289	0/0:118:118,0:118:4206:0:0:0,-35.5215,-378.674	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.172	0/1:58:32,26:32:1143:26:901:-63.5514,0,-85.6115	0/0:68:68,0:68:2439:0:0:0,-20.47,-219.629	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4605	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.262	0/0:78:78,0:78:2755:0:0:0,-23.4803,-247.195	0/0:117:117,0:117:4185:0:0:0,-35.2205,-376.686	0/0:95:95,0:95:3373:0:0:0,-28.5978,-303.667	0/1:44:22,22:22:792:22:726:-52.346,0,-58.3522	0/1:63:37,26:37:1328:26:918:-63.9598,0,-100.568	0/1:121:74,47:74:2643:47:1649:-112.113,0,-201.369	0/0:28:28,0:28:990:0:0:0,-8.42884,-89.4127	0/0:74:74,0:74:2625:0:0:0,-22.2762,-236.496	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.136	0/1:23:12,11:12:423:11:392:-28.6917,0,-31.4814	0/1:56:37,19:37:1320:19:671:-43.8581,0,-102.199	0/1:69:27,42:27:959:42:1497:-114.108,0,-65.8543	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.176	0/0:92:91,1:91:3247:1:32:0,-24.4956,-289.023
chr07	20976949	.	A	G	18812.1	PASS	AB=0.380332;ABP=317.956;AC=49;AF=0.266304;AN=184;AO=970;CIGAR=1X;DP=5976;DPB=5976;DPRA=0.877551;EPP=309.479;EPPR=2479.19;GTI=6;LEN=1;MEANALT=1.02041;MQM=59.5763;MQMR=59.9397;NS=92;NUMALT=1;ODDS=5.74176;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34463;QR=178873;RO=5005;RPL=670;RPP=309.479;RPPR=2475.05;RPR=300;RUN=1;SAF=0;SAP=2109.34;SAR=970;SRF=1;SRP=10862.5;SRR=5004;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:29,10:29:1036:10:356:-20.4494,0,-81.8137	0/1:38:25,13:25:900:13:464:-30.6584,0,-69.8819	0/1:112:78,34:78:2804:34:1216:-76.023,0,-218.884	0/1:139:101,38:101:3616:38:1330:-78.1401,0,-283.798	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:32:32,0:32:1116:0:0:0,-9.63296,-100.714	0/0:80:80,0:80:2851:0:0:0,-24.0824,-256.828	0/0:155:153,2:153:5472:2:72:0,-39.8229,-485.744	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:46:28,18:28:1004:18:644:-44.421,0,-76.8285	0/0:43:43,0:43:1519:0:0:0,-12.9443,-137.002	0/1:70:44,26:44:1561:26:928:-62.7437,0,-119.708	0/1:38:20,18:20:720:18:639:-46.3991,0,-53.6896	0/1:52:30,22:30:1080:22:784:-55.1945,0,-81.8597	0/1:40:17,23:17:608:23:815:-61.6143,0,-43.0108	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/1:20:11,9:11:396:9:324:-23.477,0,-29.9621	0/1:50:44,6:44:1567:6:216:-4.73901,0,-126.269	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.759	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.486	0/0:112:112,0:112:3984:0:0:0,-33.7154,-358.746	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:53:35,18:35:1260:18:644:-42.336,0,-97.7427	0/1:193:108,85:108:3868:85:3023:-214.189,0,-290.15	0/0:176:175,1:175:6272:1:36:0,-49.383,-560.975	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:123:73,50:73:2620:50:1754:-121.097,0,-199.021	0/1:91:61,30:61:2183:30:1072:-69.3987,0,-169.342	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/0:130:130,0:130:4633:0:0:0,-39.1339,-417.133	0/1:71:51,20:51:1824:20:711:-42.2329,0,-143.068	0/1:37:24,13:24:860:13:438:-28.6015,0,-66.5837	.:.:.:.:.:.:.:.	0/1:90:64,26:64:2292:26:928:-56.7456,0,-179.449	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:96:50,46:50:1783:46:1648:-119.71,0,-131.853	0/1:29:13,16:13:468:16:572:-43.0836,0,-33.7298	0/1:38:19,19:19:684:19:680:-50.09,0,-50.4512	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.53	0/0:94:94,0:94:3356:0:0:0,-28.2968,-301.926	0/1:107:57,50:57:2040:50:1778:-128.047,0,-151.662	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:117:117,0:117:4181:0:0:0,-35.2205,-376.471	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:112:76,36:76:2724:36:1268:-80.6992,0,-211.633	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:73:49,24:49:1756:24:864:-56.1074,0,-136.349	0/1:32:20,12:20:712:12:432:-29.5308,0,-54.7737	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.029	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:122:122,0:122:4326:0:0:0,-36.7257,-389.516	0/0:122:121,1:121:4331:1:36:0,-33.1274,-386.362	0/1:44:27,17:27:963:17:608:-41.8067,0,-73.7406	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.244	0/1:69:54,15:54:1913:15:528:-27.0803,0,-151.645	0/1:81:43,38:43:1524:38:1356:-97.9528,0,-113.059	0/1:28:15,12:15:536:12:428:-30.3714,0,-40.0873	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/1:31:23,8:23:828:8:284:-16.5714,0,-65.5122	0/1:22:16,6:16:572:6:216:-13.1679,0,-45.1908	0/0:138:138,0:138:4916:0:0:0,-41.5421,-442.56	0/1:47:26,21:26:936:21:738:-52.584,0,-70.4111	0/0:121:121,0:121:4319:0:0:0,-36.4246,-388.887	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/1:94:54,40:54:1924:40:1411:-98.9872,0,-145.14	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:75:75,0:75:2648:0:0:0,-22.5772,-238.552	0/0:165:165,0:165:5895:0:0:0,-49.6699,-530.66	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.273	0/1:52:30,22:30:1061:22:775:-54.3706,0,-80.1458	0/1:20:13,7:13:468:7:252:-16.9976,0,-36.439	0/1:69:38,31:38:1364:31:1094:-77.9759,0,-102.29	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:39:24,15:24:856:15:532:-36.4582,0,-65.6209	0/1:65:41,24:41:1468:24:854:-57.5717,0,-112.849	0/1:42:14,28:14:496:28:999:-77.5706,0,-32.331	0/0:69:69,0:69:2450:0:0:0,-20.7711,-220.754	0/0:76:76,0:76:2721:0:0:0,-22.8783,-245.103
chr07	20982454	.	C	T	28578.4	PASS	AB=0.493627;ABP=4.22814;AC=49;AF=0.260638;AN=188;AO=1722;CIGAR=1X;DP=7637;DPB=7637;DPRA=0.919188;EPP=3742.29;EPPR=12840.8;GTI=2;LEN=1;MEANALT=1.03704;MQM=59.9152;MQMR=59.9844;NS=94;NUMALT=1;ODDS=3.15112;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61678;QR=211795;RO=5912;RPL=0;RPP=3742.29;RPPR=12840.8;RPR=1722;RUN=1;SAF=1722;SAP=3742.29;SAR=0;SRF=5912;SRP=12840.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:11,13:11:392:13:468:-35.2349,0,-28.3953	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	0/1:68:29,39:29:1044:39:1396:-105.469,0,-73.8048	0/1:222:115,107:115:4116:107:3840:-278.899,0,-303.796	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:137:137,0:137:4912:0:0:0,-41.2411,-442.23	0/0:125:125,0:125:4476:0:0:0,-37.6287,-403.009	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/1:87:46,41:46:1629:41:1468:-106.213,0,-120.707	0/0:53:52,1:52:1872:1:36:0,-12.3563,-165.161	0/1:87:48,39:48:1720:39:1400:-100.11,0,-128.896	0/1:66:35,31:35:1252:31:1103:-79.6834,0,-93.1171	0/1:75:37,38:37:1316:38:1368:-100.844,0,-96.1646	0/1:79:42,37:42:1512:37:1332:-96.2433,0,-112.593	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:20:15,5:15:536:5:180:-10.5315,0,-42.5542	0/1:162:81,81:81:2916:81:2896:-212.109,0,-213.907	0/0:165:165,0:165:5908:0:0:0,-49.6699,-531.829	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/0:161:159,2:159:5700:2:72:0,-41.6291,-506.28	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/1:53:36,17:36:1296:17:612:-39.4588,0,-100.989	0/1:253:127,126:127:4556:126:4520:-330.788,0,-334.045	0/0:239:235,4:235:8424:4:144:0,-58.6325,-744.848	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:263:144,119:144:5164:119:4260:-304.408,0,-385.729	0/1:106:46,60:46:1648:60:2148:-161.678,0,-116.699	0/0:98:98,0:98:3507:0:0:0,-29.5009,-315.84	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:186:186,0:186:6692:0:0:0,-55.9916,-601.652	0/1:143:72,71:72:2572:71:2544:-186.155,0,-188.683	0/1:44:19,25:19:671:25:900:-68.0757,0,-47.4705	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:96:45,50:45:1620:50:1786:-132.212,0,-117.279	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2693	0/1:110:67,43:67:2408:43:1532:-105.06,0,-183.863	0/1:56:31,25:31:1116:25:900:-64.4633,0,-83.894	0/1:58:36,22:36:1296:22:792:-54.1459,0,-99.4842	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/0:80:79,0:79:2808:0:0:0,-23.7814,-252.638	0/1:107:40,67:40:1432:67:2408:-184.766,0,-96.967	0/0:51:50,1:50:1780:1:36:0,-11.7543,-156.885	0/0:177:177,0:177:6348:0:0:0,-53.2823,-571.396	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.495	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:59:32,27:32:1148:27:952:-68.2344,0,-85.8691	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:168:88,80:88:3145:80:2864:-207.42,0,-232.701	0/1:36:15,21:15:532:21:748:-56.8082,0,-37.376	0/1:18:8,10:8:288:10:352:-26.5997,0,-20.8489	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/0:151:151,0:151:5396:0:0:0,-45.4555,-485.772	0/0:152:147,5:147:5251:5:180:0,-29.2045,-456.176	0/1:61:29,32:29:1040:32:1129:-83.5535,0,-75.5515	0/0:54:54,0:54:1913:0:0:0,-16.2556,-172.445	0/1:81:52,29:52:1860:29:1036:-69.1705,0,-143.296	0/1:94:23,71:23:828:71:2540:-200.541,0,-46.5473	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:51:20,31:20:716:31:1116:-85.343,0,-49.4152	0/1:21:16,5:16:576:5:180:-10.2304,0,-45.8534	0/0:173:173,0:173:6181:0:0:0,-52.0782,-556.383	0/1:61:28,33:28:1004:33:1188:-88.8658,0,-72.313	0/0:164:164,0:164:5853:0:0:0,-49.3689,-526.882	0/0:134:134,0:134:4820:0:0:0,-40.338,-433.952	0/1:37:18,19:18:648:19:684:-50.7522,0,-47.5138	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.572	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	0/0:142:142,0:142:5077:0:0:0,-42.7463,-457.073	0/0:134:134,0:134:4804:0:0:0,-40.338,-432.515	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/1:68:37,31:37:1332:31:1108:-79.561,0,-99.7123	0/1:55:32,23:32:1148:23:828:-58.2875,0,-87.0732	0/1:105:61,44:61:2192:44:1580:-110.883,0,-165.937	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:42:16,26:16:576:26:927:-71.1041,0,-39.5317	0/1:123:62,61:62:2206:61:2177:-159.157,0,-161.777	0/1:59:21,38:21:756:38:1368:-105.66,0,-50.6065	0/0:117:115,1:115:4120:1:36:0,-31.681,-367.386	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.148
chr07	21040678	.	C	T	27446.8	PASS	AB=0.477648;ABP=17.1827;AC=51;AF=0.271277;AN=188;AO=1574;CIGAR=1X;DP=6653;DPB=6653;DPRA=0.987221;EPP=3041.22;EPPR=10026.5;GTI=3;LEN=1;MEANALT=1;MQM=59.8196;MQMR=59.9807;NS=94;NUMALT=1;ODDS=0.844074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56229;QR=179333;RO=5077;RPL=45;RPP=3041.22;RPPR=10026.5;RPR=1529;RUN=1;SAF=1574;SAP=3420.91;SAR=0;SRF=5077;SRP=11027.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:20,24:20:712:24:852:-63.7551,0,-51.1613	0/1:107:71,36:71:2505:36:1288:-84.0134,0,-193.492	0/1:77:41,36:41:1455:36:1284:-92.6841,0,-108.066	0/1:105:50,55:50:1771:55:1980:-146.846,0,-128.064	0/0:44:44,0:44:1545:0:0:0,-13.2453,-139.34	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:117:116,0:116:4128:0:0:0,-34.9195,-371.347	0/0:83:83,0:83:2908:0:0:0,-24.9855,-261.956	0/0:60:60,0:60:2122:0:0:0,-18.0618,-191.248	0/1:86:55,31:55:1968:31:1116:-74.8585,0,-151.506	0/0:50:50,0:50:1742:0:0:0,-15.0515,-157.063	0/1:60:30,30:30:1067:30:1071:-78.1483,0,-78.2794	0/1:74:35,39:35:1219:39:1400:-104.023,0,-87.7337	0/1:65:33,32:33:1180:32:1143:-83.6115,0,-86.9411	0/1:52:26,26:26:924:26:936:-68.9059,0,-67.8241	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:68:67,0:67:2357:0:0:0,-20.169,-212.029	0/0:71:70,1:70:2479:1:36:0,-17.7749,-219.763	0/1:62:30,32:30:1049:32:1152:-85.3213,0,-76.0543	0/1:132:75,57:75:2630:57:2040:-144.006,0,-197.209	0/0:129:129,0:129:4519:0:0:0,-38.8329,-406.756	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.939	0/0:54:54,0:54:1899:0:0:0,-16.2556,-171.17	0/0:88:88,0:88:3125:0:0:0,-26.4906,-281.476	0/1:43:14,29:14:500:29:1027:-79.7975,0,-32.3919	0/1:172:79,93:79:2807:93:3306:-245.979,0,-201.092	0/0:150:150,0:150:5240:0:0:0,-45.1545,-471.748	0/0:24:24,0:24:839:0:0:0,-7.22472,-75.8273	0/1:217:105,112:105:3725:112:4019:-296.574,0,-270.129	0/1:84:43,41:43:1489:41:1465:-106.844,0,-109.014	0/0:101:101,0:101:3567:0:0:0,-30.404,-321.236	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:156:156,0:156:5509:0:0:0,-46.9607,-495.938	0/1:82:51,31:51:1820:31:1104:-74.9812,0,-139.397	0/1:65:36,29:36:1270:29:1042:-74.5196,0,-95.0344	1/1:4:0,4:0:0:4:134:-12.1941,-1.20412,0	0/1:86:50,36:50:1767:36:1292:-90.6906,0,-133.424	0/1:30:15,15:15:532:15:539:-39.8153,0,-39.1822	0/1:98:51,47:51:1804:47:1692:-123.064,0,-133.141	0/1:113:56,57:56:1973:57:2048:-150.558,0,-143.827	0/1:51:26,25:26:887:25:882:-64.1531,0,-64.7861	0/0:84:84,0:84:2986:0:0:0,-25.2865,-268.972	0/0:75:74,1:74:2604:1:36:0,-18.979,-231.01	0/1:93:55,38:55:1946:38:1345:-93.3348,0,-147.419	0/0:105:105,0:105:3718:0:0:0,-31.6081,-334.824	0/0:81:81,0:81:2837:0:0:0,-24.3834,-255.571	0/0:158:158,0:158:5612:0:0:0,-47.5627,-505.207	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:74:35,39:35:1256:39:1392:-103.303,0,-91.0691	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.713	0/1:101:42,59:42:1474:59:2093:-158.234,0,-102.549	0/1:56:37,19:37:1280:19:684:-45.0326,0,-98.6398	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/0:100:100,0:100:3546:0:0:0,-30.103,-319.35	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:104:104,0:104:3673:0:0:0,-31.3071,-330.776	0/0:95:94,1:94:3315:1:36:0,-24.9996,-294.974	0/1:47:20,27:20:708:27:963:-72.8375,0,-49.8972	0/0:55:55,0:55:1931:0:0:0,-16.5566,-174.066	0/1:192:123,69:123:4362:69:2480:-165.655,0,-334.96	0/1:54:19,35:19:676:35:1241:-95.7287,0,-44.9124	0/1:24:13,11:13:456:11:389:-28.0991,0,-34.1485	0/0:50:50,0:50:1739:0:0:0,-15.0515,-156.794	0/1:55:29,26:29:1022:26:923:-66.8301,0,-75.7342	0/1:16:5,11:5:176:11:381:-29.8042,0,-11.3685	0/0:63:63,0:63:2231:0:0:0,-18.9649,-201.054	0/1:77:44,33:44:1564:33:1176:-82.9685,0,-117.872	0/0:137:136,1:136:4812:1:36:0,-37.6428,-429.637	0/0:90:90,0:90:3195:0:0:0,-27.0927,-287.775	0/1:56:31,25:31:1099:25:881:-62.7197,0,-82.3618	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/0:55:55,0:55:1942:0:0:0,-16.5566,-175.055	0/0:71:71,0:71:2506:0:0:0,-21.3731,-225.793	0/0:178:178,0:178:6314:0:0:0,-53.5833,-568.353	0/0:93:93,0:93:3275:0:0:0,-27.9958,-294.971	0/1:56:31,25:31:1094:25:896:-64.1027,0,-81.9106	0/1:77:40,37:40:1410:37:1332:-97.0031,0,-104.016	0/1:119:53,66:53:1888:66:2350:-175.934,0,-134.376	0/0:47:47,0:47:1655:0:0:0,-14.1484,-149.234	0/0:57:57,0:57:2003:0:0:0,-17.1587,-180.457	0/0:53:52,1:52:1837:1:36:0,-12.3563,-162.01	0/1:64:37,27:37:1296:27:972:-68.5274,0,-97.6724	0/1:68:35,33:35:1222:33:1180:-86.038,0,-89.8095	0/1:78:31,47:31:1095:47:1670:-127.105,0,-75.3788	0/0:55:55,0:55:1923:0:0:0,-16.5566,-173.347	0/0:96:95,1:95:3366:1:33:0,-25.601,-299.86
chr07	21173999	.	G	C	3707.07	PASS	AB=0.401606;ABP=170.519;AC=46;AF=0.244681;AN=188;AO=804;CIGAR=1X;DP=4313;DPB=4313;DPRA=0.963304;EPP=1748.87;EPPR=7616.19;GTI=10;LEN=1;MEANALT=1.04082;MQM=24.4975;MQMR=37.2607;NS=94;NUMALT=1;ODDS=0.401298;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28704;QR=125167;RO=3506;RPL=0;RPP=1748.87;RPPR=7616.19;RPR=804;RUN=1;SAF=804;SAP=1748.87;SAR=0;SRF=3506;SRP=7616.19;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:17,6:17:612:6:216:-7.11532,0,-43.4124	0/1:66:42,24:42:1508:24:860:-29.9225,0,-108.241	0/1:29:20,9:20:720:9:324:-11.9669,0,-51.7525	0/1:45:35,10:35:1241:10:360:-8.90249,0,-90.2044	0/0:27:27,0:27:968:0:0:0,-8.12781,-82.3801	0/0:24:24,0:24:864:0:0:0,-7.22472,-73.5559	0/0:65:64,1:64:2296:1:36:0,-17.1,-190.184	0/1:58:40,18:40:1421:18:648:-22.7508,0,-103.406	0/0:44:44,0:44:1584:0:0:0,-13.2453,-131.698	0/1:40:20,20:20:712:20:712:-29.3383,0,-48.0437	0/0:73:73,0:73:2616:0:0:0,-21.9752,-216.756	0/1:51:27,24:27:972:24:860:-38.2626,0,-66.7929	0/1:48:22,26:22:792:26:925:-42.2732,0,-52.131	0/1:54:34,20:34:1220:20:720:-28.2264,0,-86.8979	0/1:35:18,17:18:648:17:604:-26.9501,0,-44.1854	0/0:34:34,0:34:1220:0:0:0,-10.235,-102.995	0/0:47:47,0:47:1669:0:0:0,-14.1484,-141.803	0/0:57:57,0:57:2052:0:0:0,-17.1587,-173.998	0/1:22:15,7:15:540:7:248:-9.12376,0,-38.6316	0/1:75:56,19:56:1986:19:684:-18.5247,0,-144.184	0/0:64:64,0:64:2277:0:0:0,-19.2659,-192.621	0/0:53:53,0:53:1893:0:0:0,-15.9546,-158.934	0/0:14:14,0:14:489:0:0:0,-4.21442,-41.3559	0/0:48:48,0:48:1709:0:0:0,-14.4494,-145.581	0/1:23:16,7:16:576:7:252:-7.26589,0,-41.2819	0/1:88:58,30:58:2072:30:1072:-35.4814,0,-146.943	0/0:113:113,0:113:4040:0:0:0,-34.0164,-341.002	0/0:24:24,0:24:864:0:0:0,-7.22472,-72.6785	0/1:74:63,11:63:2200:11:396:-1.45908,0,-162.295	0/1:55:40,15:40:1417:15:540:-16.9933,0,-104.184	0/0:55:55,0:55:1957:0:0:0,-16.5566,-163.937	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.5341	0/0:15:15,0:15:540:0:0:0,-4.51545,-46.0338	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.6686	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.27557	0/1:6:4,2:4:144:2:72:-2.88094,0,-10.7279	0/0:112:112,0:112:4032:0:0:0,-33.7154,-335.995	0/1:66:39,27:39:1385:27:963:-38.9265,0,-96.5689	0/1:35:24,11:24:849:11:387:-14.2128,0,-60.138	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.48528	0/1:47:34,13:34:1220:13:459:-13.5569,0,-87.713	0/1:28:12,16:12:428:16:576:-27.3413,0,-28.1327	0/1:51:24,27:24:849:27:972:-43.3843,0,-56.9276	0/1:31:17,14:17:612:14:504:-20.6662,0,-41.2694	0/1:33:26,7:26:902:7:252:-5.68228,0,-65.6151	0/0:31:31,0:31:1097:0:0:0,-9.33193,-92.1634	0/0:41:41,0:41:1476:0:0:0,-12.3422,-123.763	0/1:83:52,30:52:1864:30:1071:-41.2288,0,-131.635	0/0:55:55,0:55:1980:0:0:0,-16.5566,-166.136	0/0:60:60,0:60:2141:0:0:0,-18.0618,-178.883	0/0:99:98,0:98:3504:0:0:0,-29.5009,-292.22	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.3807	0/1:75:34,41:34:1220:41:1476:-67.0843,0,-81.2688	0/0:30:30,0:30:1065:0:0:0,-9.0309,-89.13	0/1:13:11,2:11:396:2:72:-0.773731,0,-30.1364	0/1:34:21,13:21:752:13:442:-17.4077,0,-53.5527	0/1:13:4,9:4:144:9:324:-16.3152,0,-7.65405	0/1:6:3,3:3:108:3:108:-4.8397,0,-7.56303	0/0:18:18,0:18:644:0:0:0,-5.41854,-53.4535	0/0:42:42,0:42:1500:0:0:0,-12.6433,-125.853	0/0:111:111,0:111:3950:0:0:0,-33.4143,-329.242	0/1:9:4,4:4:144:4:144:-6.47262,0,-9.8691	0/0:77:77,0:77:2745:0:0:0,-23.1793,-229.58	0/0:93:91,2:91:3212:2:72:0,-23.3087,-265.268	0/1:27:20,7:20:720:7:239:-7.45513,0,-53.1502	0/0:33:33,0:33:1173:0:0:0,-9.93399,-97.7928	0/1:39:32,7:32:1131:7:239:-3.84277,0,-83.7182	0/1:74:31,43:31:1101:43:1515:-72.0584,0,-70.1171	0/1:20:4,16:4:144:16:576:-30.0448,0,-5.66188	0/0:44:44,0:44:1569:0:0:0,-13.2453,-130.156	0/1:83:49,34:49:1745:34:1220:-48.3496,0,-121.371	0/1:6:1,5:1:36:5:176:-6.84885,0,-1.53997	0/0:63:63,0:63:2241:0:0:0,-18.9649,-189.735	0/1:27:10,17:10:360:17:589:-29.6484,0,-22.5329	0/0:101:101,0:101:3579:0:0:0,-30.404,-303.151	0/0:74:74,0:74:2649:0:0:0,-22.2762,-218.317	0/1:53:30,23:30:1068:23:824:-34.0784,0,-73.5999	0/0:35:35,0:35:1256:0:0:0,-10.536,-105.96	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.48528	0/0:34:34,0:34:1224:0:0:0,-10.235,-103.999	0/1:42:21,21:21:752:21:747:-32.8283,0,-51.4634	0/0:107:107,0:107:3801:0:0:0,-32.2102,-317.262	0/0:60:60,0:60:2160:0:0:0,-18.0618,-179.798	0/1:53:27,26:27:968:26:925:-41.4755,0,-64.6944	0/1:48:25,23:25:900:23:824:-35.4934,0,-60.4161	0/1:58:24,34:24:864:34:1211:-59.2434,0,-54.3037	0/0:29:29,0:29:1044:0:0:0,-8.72987,-88.6376	0/0:48:48,0:48:1720:0:0:0,-14.4494,-143.921	0/0:51:51,0:51:1836:0:0:0,-15.3525,-155.131	0/1:40:28,12:28:985:12:432:-15.144,0,-71.5723	0/1:82:48,34:48:1728:34:1224:-47.3434,0,-121.623	0/1:24:8,16:8:288:16:576:-27.2151,0,-17.2021	0/0:36:36,0:36:1292:0:0:0,-10.8371,-108.812	0/0:58:57,1:57:2018:1:36:0,-14.9928,-166.648
chr07	21283293	.	CAAG	AAAT,CAAT	82894.9	PASS	AB=0.483185,0.514342;ABP=7.97612,6.62298;AC=137,49;AF=0.736559,0.263441;AN=186;AO=2780,1050;CIGAR=1X2M1X,3M1X;DP=3843;DPB=3843.75;DPRA=12.044,1.15124;EPP=5901.53,2197.02;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.62637,2.08163;MQM=59.9403,59.9848;MQMR=0;NS=93;NUMALT=2;ODDS=0.739602;PAIRED=0,0;PAIREDR=0;PAO=1.5,0;PQA=52,0;PQR=0;PRO=0;QA=98986,37587;QR=0;RO=0;RPL=16,10;RPP=5901.53,2197.02;RPPR=0;RPR=2764,1040;RUN=1,1;SAF=2780,1050;SAP=6039.7,2283.06;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:19:0,11,7:0:0:11,7:389,252:-52.2413,-20.5619,-17.2506,-31.6773,0,-29.57	1/2:17:0,7,10:0:0:7,10:250,360:-50.1154,-29.734,-27.6268,-20.7395,0,-17.7292	1/2:83:0,45,38:0:0:45,38:1614,1360:-242.907,-111.261,-97.7151,-132.004,0,-120.565	1/2:47:0,23,24:0:0:23,24:816,860:-136.973,-70.4971,-63.5734,-66.8324,0,-59.6076	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	.:.:.:.:.:.:.:.	1/1:25:0,25,0:0:0:25,0:896,0:-80.9607,-7.52575,0,-80.9607,-7.52575,-80.9607	1/2:52:0,25,27:0:0:25,27:887,972:-151.936,-79.6701,-72.1443,-72.6235,0,-64.4957	1/1:22:0,22,0:0:0:22,0:790,0:-71.4254,-6.62266,0,-71.4254,-6.62266,-71.4254	1/2:34:0,21,13:0:0:21,13:756,464:-99.858,-38.1841,-31.8625,-62.0318,0,-58.1184	1/1:54:0,54,0:0:0:54,0:1929,0:-173.887,-16.2556,0,-173.887,-16.2556,-173.887	1/2:71:0,31,40:0:0:31,40:1115,1423:-207.297,-116.326,-106.994,-91.3298,0,-79.2886	1/2:58:0,28,30:0:0:28,30:1007,1076:-170.28,-88.122,-79.6931,-82.5175,0,-73.4866	1/2:89:0,43,46:0:0:43,46:1539,1628:-258.462,-132.959,-120.014,-125.859,0,-112.011	1/2:47:0,21,26:0:0:21,26:755,936:-138.329,-76.7327,-70.4111,-61.9554,0,-54.1287	1/1:67:0,67,0:0:0:67,0:2385,0:-214.908,-20.169,0,-214.908,-20.169,-214.908	1/1:29:0,29,0:0:0:29,0:1010,0:-91.2093,-8.72987,0,-91.2093,-8.72987,-91.2093	1/1:36:0,36,0:0:0:36,0:1294,0:-116.764,-10.8371,0,-116.764,-10.8371,-116.764	1/2:21:0,13,7:0:0:13,7:467,252:-58.6582,-20.5619,-16.6485,-38.096,0,-35.9888	1/2:36:0,17,19:0:0:17,19:612,665:-104.394,-54.4531,-49.3356,-50.2959,0,-44.5764	1/1:35:0,35,0:0:0:35,0:1244,0:-112.265,-10.5361,0,-112.265,-10.5361,-112.265	1/1:55:0,55,0:0:0:55,0:1939,0:-174.785,-16.5567,0,-174.785,-16.5567,-174.785	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/1:37:0,37,0:0:0:37,0:1305,0:-117.75,-11.1381,0,-117.75,-11.1381,-117.75	1/2:45:0,29,16:0:0:29,16:1030,558:-129.663,-45.7297,-36.9998,-84.2838,0,-79.4674	1/2:89:0,46,43:0:0:46,43:1642,1544:-260.171,-126.309,-112.461,-134.22,0,-121.276	1/1:66:0,66,0:0:0:66,0:2342,0:-211.038,-19.868,0,-211.038,-19.868,-211.038	1/1:23:0,23,0:0:0:23,0:803,0:-72.5871,-6.92369,0,-72.5871,-6.92369,-72.5871	1/2:61:0,33,28:0:0:33,28:1168,1008:-177.743,-82.6075,-72.6735,-95.4929,0,-87.064	1/1:31:0,31,0:0:0:31,0:1078,0:-97.3266,-9.33193,0,-97.3266,-9.33193,-97.3266	1/1:26:0,24,2:0:0:24,2:856,72:-77.0015,-7.22472,0,-71.1264,-0.990058,-70.5243	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:6:0,6,0:0:0:6,0:215,0:-19.6992,-1.80618,0,-19.6992,-1.80618,-19.6992	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/1:137:0,137,0:0:0:137,0:4897,0:-440.882,-41.2411,0,-440.882,-41.2411,-440.882	1/2:34:0,17,17:0:0:17,17:605,608:-99.2412,-49.9345,-44.817,-49.6633,0,-44.5458	1/2:58:0,23,35:0:0:23,35:815,1260:-169.56,-103.169,-96.2457,-66.7474,0,-56.2114	1/1:1:0,1,0:0:0:1,0:35,0:-3.49863,-0.30103,0,-3.49863,-0.30103,-3.49863	1/2:32:0,17,15:0:0:17,15:588,536:-91.8341,-44.0594,-38.9419,-48.1265,0,-43.6111	1/2:28:0,18,10:0:0:18,10:647,360:-82.5175,-29.734,-24.3155,-53.1431,0,-50.1328	1/2:53:0,29,24:0:0:29,24:1042,860:-155.503,-70.4971,-61.7672,-85.3648,0,-78.1401	1/2:32:0,15,17:0:0:15,17:533,612:-93.7265,-50.2959,-45.7805,-43.7879,0,-38.6704	1/2:37:0,16,21:0:0:16,21:568,752:-107.964,-61.6846,-56.8681,-46.6353,0,-40.3137	1/1:33:0,33,0:0:0:33,0:1178,0:-106.328,-9.93399,0,-106.328,-9.93399,-106.328	1/1:31:0,31,0:0:0:31,0:1110,0:-100.211,-9.33193,0,-100.211,-9.33193,-100.211	1/2:58:0,34,23:0:0:34,23:1203,824:-165.18,-67.1999,-56.9649,-97.9769,0,-91.0532	1/1:37:0,37,0:0:0:37,0:1301,0:-117.39,-11.1381,0,-117.39,-11.1381,-117.39	1/1:40:0,36,0:0:0:36,0:1290,0:-116.033,-10.8371,0,-116.033,-10.8371,-116.033	1/1:67:0,67,0:0:0:67,0:2401,0:-216.347,-20.169,0,-216.347,-20.169,-216.347	1/2:5:0,4,1:0:0:4,1:143,36:-14.9552,-3.29724,-2.09312,-12.0173,0,-11.7163	1/2:52:0,34,18:0:0:34,18:1209,648:-151.755,-53.2333,-42.9983,-98.8804,0,-93.4619	1/1:28:0,28,0:0:0:28,0:988,0:-89.2334,-8.42884,0,-89.2334,-8.42884,-89.2334	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/2:30:0,12,18:0:0:12,18:431,644:-88.0319,-52.8721,-49.2597,-35.5183,0,-30.0998	1/2:12:0,4,8:0:0:4,8:143,288:-35.5183,-23.8592,-22.655,-12.0173,0,-9.60908	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:5:0,4,0:0:0:4,0:144,0:-13.0017,-1.20412,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chr07	21314008	.	A	G	38129.9	PASS	AB=0.521956;ABP=20.6506;AC=51;AF=0.271277;AN=188;AO=2215;CIGAR=1X;DP=7469;DPB=7469;DPRA=1.29174;EPP=4752.21;EPPR=11047.6;GTI=2;LEN=1;MEANALT=1.07273;MQM=59.9052;MQMR=59.9621;NS=94;NUMALT=1;ODDS=2.12378;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79341;QR=188034;RO=5245;RPL=2208;RPP=4752.21;RPPR=11047.6;RPR=7;RUN=1;SAF=0;SAP=4812.82;SAR=2215;SRF=0;SRP=11392.4;SRR=5245;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:31,25:31:1116:25:900:-64.4633,0,-83.8764	0/1:51:30,21:30:1080:21:747:-52.2018,0,-82.1603	0/1:220:98,122:98:3509:122:4375:-327.696,0,-249.792	0/1:180:83,97:83:2984:97:3465:-257.717,0,-214.606	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:15:15,0:15:540:0:0:0,-4.51545,-47.3	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.514	0/1:124:69,55:69:2484:55:1956:-138.988,0,-186.485	0/0:95:95,0:95:3397:0:0:0,-28.5978,-305.943	0/1:73:39,34:39:1404:34:1196:-85.9674,0,-104.684	0/0:25:24,1:24:855:1:36:0,-3.92747,-73.6719	0/0:95:95,0:95:3407:0:0:0,-28.5978,-306.843	0/1:82:30,51:30:1076:51:1836:-140.924,0,-72.5542	0/1:35:17,18:17:612:18:648:-47.6234,0,-44.8774	0/1:82:40,41:40:1432:41:1472:-108.033,0,-104.434	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8446	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:26:17,9:17:612:9:324:-21.6791,0,-47.5867	0/1:173:77,96:77:2768:96:3433:-257.104,0,-197.283	0/0:145:145,0:145:5201:0:0:0,-43.6493,-468.226	0/1:157:66,91:66:2361:91:3263:-246.628,0,-165.474	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.191	0/0:44:44,0:44:1552:0:0:0,-13.2453,-139.969	0/1:94:48,46:48:1705:46:1656:-121.031,0,-125.436	0/1:218:130,88:130:4676:88:3155:-218.549,0,-355.374	0/0:265:262,3:262:9401:3:108:0,-69.6978,-835.97	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:296:132,163:132:4748:163:5832:-435.932,0,-338.421	0/0:79:77,1:77:2768:1:36:0,-20.2419,-245.762	0/0:74:73,0:73:2613:0:0:0,-21.9752,-235.204	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:176:78,98:78:2785:98:3503:-262.496,0,-197.908	0/1:90:40,50:40:1436:50:1800:-135.189,0,-102.445	0/1:29:15,14:15:540:14:496:-36.2388,0,-40.2067	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:80:43,37:43:1533:37:1319:-94.9288,0,-114.179	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6282	0/1:105:50,55:50:1800:55:1968:-145.787,0,-130.674	0/1:44:15,29:15:540:29:1044:-81.0295,0,-35.6912	0/1:56:25,31:25:900:31:1116:-83.8878,0,-64.4633	0/0:108:107,0:107:3848:0:0:0,-32.2102,-346.154	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:129:70,59:70:2516:59:2116:-151.876,0,-187.859	0/0:114:114,0:114:4089:0:0:0,-34.3174,-368.193	0/0:108:107,0:107:3816:0:0:0,-32.2102,-343.421	0/0:128:128,0:128:4570:0:0:0,-38.5318,-411.463	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:89:48,41:48:1713:41:1448:-103.821,0,-127.662	0/0:46:45,1:45:1616:1:32:0,-10.6495,-142.532	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:149:95,54:95:3408:54:1936:-129.663,0,-262.08	0/1:45:24,21:24:860:21:748:-54.0833,0,-64.1755	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.999	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:201:201,0:201:7220:0:0:0,-60.507,-649.623	0/0:117:115,2:115:4121:2:72:0,-28.3838,-364.235	0/1:43:24,19:24:860:19:674:-48.0411,0,-64.7775	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.091	0/1:164:84,80:84:3012:80:2868:-208.974,0,-221.942	0/1:162:57,105:57:2048:105:3764:-290.192,0,-135.825	0/1:27:8,19:8:288:19:684:-53.7625,0,-18.1396	0/0:18:18,0:18:628:0:0:0,-5.41854,-56.8451	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:26:15,11:15:536:11:396:-28.156,0,-40.748	0/0:131:131,0:131:4672:0:0:0,-39.4349,-420.64	0/1:70:27,43:27:972:43:1540:-117.821,0,-66.7258	0/0:100:99,0:99:3556:0:0:0,-29.802,-320.036	0/0:107:106,0:106:3793:0:0:0,-31.9092,-341.207	0/1:55:19,36:19:684:36:1292:-100.027,0,-45.3303	0/0:71:69,2:69:2465:2:72:0,-14.5364,-215.263	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:130:70,60:70:2475:60:2152:-154.756,0,-183.853	0/1:218:99,119:99:3560:119:4284:-319.174,0,-254.982	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:55:22,33:22:788:33:1188:-90.6719,0,-54.6881	0/1:50:25,25:25:896:25:896:-65.9089,0,-65.9089	0/1:124:58,66:58:2088:66:2376:-176.763,0,-150.861	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:49:26,23:26:936:23:815:-58.9203,0,-69.8062	0/1:69:19,50:19:669:50:1792:-140.791,0,-39.7629	0/0:164:164,0:164:5896:0:0:0,-49.3689,-530.747	0/0:82:82,0:82:2937:0:0:0,-24.6845,-264.561
chr07	21317552	.	T	C	16794.1	PASS	AB=0.573922;ABP=245.072;AC=51;AF=0.274194;AN=186;AO=2959;CIGAR=1X;DP=8905;DPB=8905;DPRA=1.40968;EPP=6428.4;EPPR=12884.2;GTI=5;LEN=1;MEANALT=1.0339;MQM=22.8682;MQMR=34.2709;NS=93;NUMALT=1;ODDS=0.316201;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104678;QR=212873;RO=5944;RPL=2959;RPP=6428.4;RPPR=12884.2;RPR=0;RUN=1;SAF=2959;SAP=6428.4;SAR=0;SRF=5944;SRP=12910.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:3,15:3:108:15:522:-25.3496,0,-3.6707	0/1:147:65,82:65:2340:82:2940:-124.5,0,-145.414	0/1:121:41,80:41:1457:80:2843:-127.579,0,-81.1754	0/1:174:64,110:64:2283:110:3884:-172.523,0,-128.102	0/0:54:54,0:54:1932:0:0:0,-16.2556,-155.502	0/0:67:67,0:67:2412:0:0:0,-20.169,-195.799	0/0:104:104,0:104:3736:0:0:0,-31.3071,-296.326	0/1:266:139,127:139:4973:127:4494:-180.138,0,-321.732	0/0:70:70,0:70:2508:0:0:0,-21.0721,-203.709	0/1:128:49,79:49:1756:79:2791:-122.84,0,-99.0662	0/0:48:47,1:47:1666:1:36:0,-12.1706,-133.061	0/0:66:66,0:66:2364:0:0:0,-19.868,-192.026	0/1:56:28,28:28:1004:28:991:-40.6313,0,-65.1969	0/1:96:44,52:44:1562:52:1832:-77.4079,0,-97.7995	0/1:50:25,25:25:900:25:896:-36.4236,0,-56.1673	0/0:50:50,0:50:1792:0:0:0,-15.0515,-145.128	0/0:81:81,0:81:2899:0:0:0,-24.3834,-234.987	0/0:45:45,0:45:1611:0:0:0,-13.5463,-130.032	0/1:24:16,8:16:576:8:288:-9.411,0,-39.8446	0/1:210:87,123:87:3132:123:4359:-188.36,0,-184.261	0/0:74:74,0:74:2634:0:0:0,-22.2762,-211.963	0/1:131:27,104:27:955:104:3684:-166.399,0,-35.2359	0/0:89:87,2:87:3108:2:68:0,-22.4904,-243.281	0/0:76:76,0:76:2736:0:0:0,-22.8783,-219.573	0/1:68:22,46:22:788:46:1614:-73.4885,0,-43.0523	0/1:334:132,202:132:4744:202:7154:-298.767,0,-270.489	0/0:140:140,0:140:5036:0:0:0,-42.1442,-409.342	0/0:20:20,0:20:716:0:0:0,-6.0206,-58.3807	0/1:216:105,111:105:3754:111:3945:-153.312,0,-227.444	0/0:316:299,17:299:10705:17:595:0,-60.1977,-828.559	0/0:217:214,3:214:7656:3:99:0,-59.0582,-598.018	0/1:7:2,5:2:72:5:180:-8.37557,0,-4.06049	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.0108	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.3485	0/1:3:2,1:2:72:1:36:-1.37578,0,-5.26461	0/1:7:3,4:3:108:4:144:-6.32459,0,-6.80319	0/1:210:125,85:125:4472:85:3005:-103.66,0,-285.395	0/1:227:102,125:102:3656:125:4431:-188.645,0,-226.443	0/1:53:26,27:26:923:27:936:-39.3452,0,-59.5778	0/1:4:1,3:1:36:3:108:-5.1767,0,-2.04204	0/1:145:63,82:63:2268:82:2936:-124.905,0,-138.017	0/1:20:11,9:11:396:9:324:-12.6661,0,-26.441	0/1:141:55,86:55:1967:86:3058:-133.644,0,-115.67	0/1:47:26,21:26:932:21:747:-29.038,0,-60.6329	0/1:58:23,35:23:820:35:1188:-54.4626,0,-48.5946	0/0:49:49,0:49:1760:0:0:0,-14.7505,-138.241	0/0:114:114,0:114:4088:0:0:0,-34.3174,-329.115	0/1:210:90,120:90:3227:120:4246:-182.226,0,-194.023	0/0:91:90,1:90:3220:1:36:0,-25.1149,-254.608	0/0:182:182,0:182:6513:0:0:0,-54.7875,-515.671	0/0:82:82,0:82:2944:0:0:0,-24.6845,-230.193	0/1:7:1,6:1:36:6:212:-10.3989,0,-1.08041	0/1:119:41,78:41:1472:78:2755:-123.841,0,-84.3847	0/0:67:67,0:67:2408:0:0:0,-20.169,-188.647	0/1:15:4,11:4:144:11:392:-18.3319,0,-7.58783	0/1:122:46,76:46:1648:76:2723:-120.195,0,-94.6542	0/1:50:16,34:16:572:34:1207:-54.7435,0,-31.0735	.:.:.:.:.:.:.:.	0/0:10:10,0:10:356:0:0:0,-3.0103,-28.2637	0/0:78:78,0:78:2786:0:0:0,-23.4803,-222.985	0/0:85:84,1:84:3005:1:36:0,-23.3087,-235.966	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	0/0:179:179,0:179:6424:0:0:0,-53.8844,-502.715	0/0:201:198,3:198:7108:3:99:0,-54.2417,-558.558	0/1:65:31,33:31:1108:33:1184:-48.4097,0,-70.276	0/0:90:90,0:90:3125:0:0:0,-27.0927,-250.261	0/1:218:85,132:85:3056:132:4668:-204.634,0,-176.401	0/1:132:30,102:30:1071:102:3598:-169.54,0,-44.5957	0/1:17:7,10:7:252:10:356:-15.5928,0,-15.6579	0/0:66:66,0:66:2342:0:0:0,-19.868,-190.204	0/1:100:47,53:47:1683:53:1879:-74.1313,0,-101.461	0/1:11:5,6:5:180:6:203:-9.08135,0,-11.3517	0/0:74:74,0:74:2656:0:0:0,-22.2762,-212.919	0/1:39:15,24:15:540:24:828:-37.165,0,-32.4076	0/0:164:164,0:164:5863:0:0:0,-49.3689,-471.894	0/0:146:146,0:146:5244:0:0:0,-43.9504,-416.108	0/1:184:83,101:83:2984:101:3592:-151.846,0,-185.772	0/0:77:75,2:75:2687:2:72:0,-18.8495,-212.328	0/0:10:10,0:10:356:0:0:0,-3.0103,-29.3657	0/0:74:74,0:74:2660:0:0:0,-22.2762,-215.321	0/1:220:99,121:99:3547:121:4280:-181.82,0,-219.973	0/1:158:68,90:68:2440:90:3190:-137.285,0,-146.691	0/0:78:78,0:78:2796:0:0:0,-23.4803,-221.589	0/1:61:27,34:27:972:34:1207:-51.4322,0,-59.8563	0/1:93:46,47:46:1643:47:1660:-67.6728,0,-102.552	0/1:127:66,61:66:2376:61:2131:-86.7355,0,-152.009	0/0:23:23,0:23:828:0:0:0,-6.92369,-66.9911	0/0:70:70,0:70:2504:0:0:0,-21.0721,-201.515	0/0:67:67,0:67:2400:0:0:0,-20.169,-194.137	0/1:41:16,25:16:576:25:876:-38.9968,0,-34.7127	0/1:99:45,54:45:1620:54:1868:-79.6633,0,-100.534	0/1:51:17,34:17:612:34:1180:-54.1786,0,-32.5155	0/0:105:105,0:105:3744:0:0:0,-31.6081,-298.845	0/0:96:95,1:95:3408:1:36:0,-26.62,-267.202
chr07	21426699	.	CGAGT	TGAGT,CTGAGC	95564.8	PASS	AB=0.489093,0.506315;ABP=5.71031,3.91529;AC=139,47;AF=0.747312,0.252688;AN=186;AO=3262,1326;CIGAR=1X4M,1M1I3M1X;DP=4608;DPB=4875;DPRA=0,1.30788;EPP=7034.33,2882.38;EPPR=5.18177;GTI=1;LEN=1,6;MEANALT=1.74194,2.22;MQM=47.7005,45.0377;MQMR=60;NS=93;NUMALT=2;ODDS=0.319293;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=116452,46966;QR=36;RO=1;RPL=3256,1326;RPP=7034.33,2882.38;RPPR=5.18177;RPR=6,0;RUN=1,1;SAF=0,0;SAP=7086.35,2882.38;SAR=3262,1326;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,22,19:0:0:22,19:782,677:-116.151,-53.6565,-47.0339,-62.8419,0,-57.1224	1/2:35:0,22,13:0:0:22,13:765,458:-98.0126,-36.5724,-29.9497,-61.7836,0,-57.8702	1/2:110:0,48,61:0:0:48,61:1705,2134:-303.048,-167.053,-152.604,-135.979,0,-117.616	1/2:117:0,59,58:0:0:59,58:2086,2034:-332.02,-163.326,-145.565,-169.042,0,-151.582	1/1:26:0,26,0:0:0:26,0:935,0:-83.6373,-7.82678,0,-83.6373,-7.82678,-83.6373	1/1:9:0,9,0:0:0:9,0:324,0:-29.1807,-2.70927,0,-29.1807,-2.70927,-29.1807	1/1:21:0,21,0:0:0:21,0:748,0:-67.3336,-6.32163,0,-67.3336,-6.32163,-67.3336	1/2:92:0,42,50:0:0:42,50:1488,1759:-258.651,-139.649,-127.006,-119.348,0,-104.296	1/1:52:0,52,0:0:0:52,0:1861,0:-165.669,-15.6536,0,-165.669,-15.6536,-165.669	1/2:39:0,26,13:0:0:26,13:936,464:-112.589,-37.1453,-29.3185,-75.7944,0,-71.881	1/1:43:0,43,0:0:0:43,0:1540,0:-137.664,-12.9443,0,-137.664,-12.9443,-137.664	1/1:92:0,92,0:0:0:92,0:3277,0:-289.66,-27.6948,0,-289.66,-27.6948,-289.66	1/2:66:1,33,32:1:36:33,32:1180,1147:-181.478,-86.9197,-79.9235,-91.9114,0,-85.2161	1/2:46:0,27,18:0:0:27,18:971,634:-128.921,-50.9134,-42.7856,-78.0686,0,-72.6501	1/2:53:0,34,19:0:0:34,19:1207,681:-152.073,-55.3204,-45.0854,-97.1056,0,-91.3861	1/1:53:0,53,0:0:0:53,0:1896,0:-169.47,-15.9546,0,-169.47,-15.9546,-169.47	1/1:19:0,19,0:0:0:19,0:684,0:-61.2156,-5.71957,0,-61.2156,-5.71957,-61.2156	1/1:18:0,18,0:0:0:18,0:640,0:-57.1842,-5.41854,0,-57.1842,-5.41854,-57.1842	1/2:26:0,9,17:0:0:9,17:317,610:-74.1513,-48.9498,-46.2405,-25.5484,0,-20.4309	1/2:38:0,20,18:0:0:20,18:720,642:-109.898,-51.7879,-45.7673,-58.4631,0,-53.0445	1/1:120:0,119,0:0:0:119,0:4253,0:-378.038,-35.8226,0,-378.038,-35.8226,-378.038	1/2:41:0,14,27:0:0:14,27:500,950:-117.37,-77.0086,-72.7942,-40.7136,0,-32.5858	1/1:26:0,26,0:0:0:26,0:932,0:-83.6118,-7.82678,0,-83.6118,-7.82678,-83.6118	1/1:36:0,36,0:0:0:36,0:1292,0:-115.439,-10.8371,0,-115.439,-10.8371,-115.439	1/2:50:0,31,19:0:0:31,19:1097,665:-141.365,-53.3439,-44.012,-88.3664,0,-82.6468	1/2:84:0,44,39:0:0:44,39:1566,1383:-238.623,-112.087,-98.8419,-126.676,0,-114.936	1/1:108:0,107,0:0:0:107,0:3834,0:-340.736,-32.2102,0,-340.736,-32.2102,-340.736	1/1:16:0,16,0:0:0:16,0:553,0:-49.2483,-4.81648,0,-49.2483,-4.81648,-49.2483	1/2:92:0,48,42:0:0:48,42:1724,1497:-260.781,-121.097,-106.648,-139.708,0,-127.064	1/1:40:0,40,0:0:0:40,0:1431,0:-127.723,-12.0412,0,-127.723,-12.0412,-127.723	1/1:25:0,24,1:0:0:24,1:863,36:-76.618,-7.22472,0,-73.7088,-3.95894,-73.4078	1/2:5:0,2,3:0:0:2,3:72,108:-14.8639,-9.03275,-8.43069,-6.18746,0,-5.28437	1/1:14:0,13,0:0:0:13,0:459,0:-40.7469,-3.91339,0,-40.7469,-3.91339,-40.7469	1/1:4:0,4,0:0:0:4,0:144,0:-13.2138,-1.20412,0,-13.2138,-1.20412,-13.2138	1/2:6:0,2,4:0:0:2,4:72,144:-17.6283,-11.8236,-11.2216,-6.15931,0,-4.95519	1/2:11:0,5,6:0:0:5,6:180,215:-31.9622,-17.4509,-15.9458,-14.8645,0,-13.0583	1/2:151:0,70,80:0:0:70,80:2520,2837:-433.168,-228.475,-207.403,-204.717,0,-180.635	1/2:66:0,27,38:0:0:27,38:963,1350:-185.108,-107.491,-99.3636,-77.6125,0,-66.1734	1/2:32:0,16,16:0:0:16,16:576,570:-92.0571,-45.7191,-40.9026,-46.6899,0,-41.8734	1/1:4:0,4,0:0:0:4,0:144,0:-13.2217,-1.20412,0,-13.2217,-1.20412,-13.2217	1/2:50:0,28,22:0:0:28,22:1008,779:-142.976,-61.3138,-52.8849,-82.0104,0,-75.3877	1/2:27:0,16,11:0:0:16,11:576,389:-77.4987,-30.8304,-26.014,-47.0162,0,-43.7049	1/2:87:0,39,48:0:0:39,48:1379,1708:-248.14,-137.404,-125.664,-111.086,0,-96.6365	1/2:33:0,8,24:0:0:8,24:288,836:-90.4686,-67.118,-64.7097,-23.3484,0,-16.1237	1/2:36:0,22,14:0:0:22,14:775,493:-102.67,-40.0311,-33.4084,-62.9879,0,-58.7735	1/1:64:0,64,0:0:0:64,0:2300,0:-206.416,-19.2659,0,-206.416,-19.2659,-206.416	1/1:66:0,66,0:0:0:66,0:2362,0:-209.655,-19.868,0,-209.655,-19.868,-209.655	1/2:118:0,47,70:0:0:47,70:1673,2467:-333.635,-198.563,-184.415,-135.107,0,-114.035	1/1:62:0,62,0:0:0:62,0:2219,0:-198.758,-18.6639,0,-198.758,-18.6639,-198.758	1/1:28:0,28,0:0:0:28,0:981,0:-86.8117,-8.42884,0,-86.8117,-8.42884,-86.8117	1/1:60:0,59,0:0:0:59,0:2112,0:-188.794,-17.7608,0,-188.794,-17.7608,-188.794	1/1:5:0,5,0:0:0:5,0:180,0:-16.482,-1.50515,0,-16.482,-1.50515,-16.482	1/2:118:0,79,39:0:0:79,39:2835,1398:-338.052,-110.429,-86.6472,-227.973,0,-216.233	1/1:6:0,6,0:0:0:6,0:216,0:-19.5889,-1.80618,0,-19.5889,-1.80618,-19.5889	1/1:2:0,2,0:0:0:2,0:72,0:-6.76137,-0.60206,0,-6.76137,-0.60206,-6.76137	1/2:67:0,29,38:0:0:29,38:1037,1342:-190.458,-106.91,-98.1802,-83.8975,0,-72.4583	1/2:30:0,15,15:0:0:15,15:532,523:-84.1077,-42.3713,-37.8558,-42.0801,0,-37.5646	.:.:.:.:.:.:.:.	1/1:21:0,21,0:0:0:21,0:756,0:-68.1811,-6.32163,0,-68.1811,-6.32163,-68.1811	1/1:27:0,27,0:0:0:27,0:944,0:-84.0995,-8.12781,0,-84.0995,-8.12781,-84.0995	1/1:78:0,77,0:0:0:77,0:2766,0:-247.418,-23.1793,0,-247.418,-23.1793,-247.418	1/2:4:0,3,1:0:0:3,1:108,36:-12.0381,-3.26578,-2.36269,-9.12945,0,-8.82842	1/1:114:0,114,0:0:0:114,0:4087,0:-365.864,-34.3174,0,-365.864,-34.3174,-365.864	1/1:46:0,45,1:0:0:45,1:1611,35:-143.127,-13.5464,0,-140.302,-10.3739,-140.001	1/2:21:0,11,10:0:0:11,10:390,352:-59.478,-28.6515,-25.3402,-31.1729,0,-28.1626	1/1:29:0,29,0:0:0:29,0:1033,0:-92.442,-8.72987,0,-92.442,-8.72987,-92.442	1/2:90:0,41,49:0:0:41,49:1462,1743:-257.282,-139.142,-126.799,-118.492,0,-103.741	1/2:72:0,28,44:0:0:28,44:989,1564:-202.927,-123.517,-115.088,-79.7569,0,-66.5116	1/2:29:0,19,10:0:0:19,10:683,353:-83.5291,-28.694,-22.9744,-55.1854,0,-52.1751	1/1:30:0,30,0:0:0:30,0:1069,0:-95.172,-9.0309,0,-95.172,-9.0309,-95.172	1/2:30:0,12,18:0:0:12,18:417,648:-86.7561,-52.9297,-49.3173,-34.1777,0,-28.7591	1/2:14:0,8,6:0:0:8,6:275,210:-39.2313,-17.2711,-14.8629,-22.3034,0,-20.4972	1/1:71:0,70,0:0:0:70,0:2496,0:-220.673,-21.0721,0,-220.673,-21.0721,-220.673	1/2:68:0,31,37:0:0:31,37:1114,1317:-193.042,-103.776,-94.444,-89.6153,0,-78.4772	1/1:66:0,65,0:0:0:65,0:2303,0:-204.433,-19.567,0,-204.433,-19.567,-204.433	1/1:96:0,95,1:0:0:95,1:3393,36:-303.085,-28.5979,0,-300.175,-25.3321,-299.874	1/2:36:0,20,16:0:0:20,16:714,574:-103.043,-46.1001,-40.0795,-57.293,0,-52.4765	1/1:57:0,57,0:0:0:57,0:2034,0:-180.724,-17.1587,0,-180.724,-17.1587,-180.724	1/1:10:0,9,0:0:0:9,0:324,0:-28.7296,-2.70927,0,-28.7296,-2.70927,-28.7296	1/1:58:0,58,0:0:0:58,0:2054,0:-182.296,-17.4597,0,-182.296,-17.4597,-182.296	1/2:45:0,20,25:0:0:20,25:713,893:-128.654,-71.5094,-65.4888,-57.495,0,-49.9692	1/2:130:0,57,72:0:0:57,72:2044,2536:-368.363,-202.578,-185.419,-165.818,0,-144.144	1/1:38:0,38,0:0:0:38,0:1368,0:-122.551,-11.4391,0,-122.551,-11.4391,-122.551	1/2:40:0,17,23:0:0:17,23:604,801:-112.776,-63.8274,-58.7099,-49.2968,0,-42.3731	1/2:29:0,12,17:0:0:12,17:432,610:-84.412,-49.3255,-45.7131,-35.4429,0,-30.3254	1/2:82:0,36,46:0:0:36,46:1274,1637:-234.582,-132.151,-121.314,-102.782,0,-88.9346	1/1:29:0,29,0:0:0:29,0:1032,0:-91.7025,-8.72987,0,-91.7025,-8.72987,-91.7025	1/1:43:0,43,0:0:0:43,0:1543,0:-137.244,-12.9443,0,-137.244,-12.9443,-137.244	1/1:43:0,43,0:0:0:43,0:1538,0:-136.4,-12.9443,0,-136.4,-12.9443,-136.4	1/2:28:0,13,15:0:0:13,15:462,533:-80.1623,-42.893,-38.9796,-37.6197,0,-33.1043	1/2:92:0,54,38:0:0:54,38:1935,1346:-262.976,-106.945,-90.6896,-156.38,0,-144.941	1/2:36:0,12,23:0:0:12,23:423,812:-99.1276,-65.5133,-61.901,-33.6395,0,-26.7158	1/1:62:0,62,0:0:0:62,0:2200,0:-197.075,-18.6639,0,-197.075,-18.6639,-197.075	1/1:58:0,58,0:0:0:58,0:2080,0:-185.445,-17.4597,0,-185.445,-17.4597,-185.445
chr07	21426722	.	TATGCT	TGTGCT	64540.7	PASS	AB=0.48371;ABP=9.02367;AC=139;AF=0.747312;AN=186;AO=3213;CIGAR=1M1X4M;DP=4590;DPB=4592.33;DPRA=0;EPP=6979.95;EPPR=2891.07;GTI=3;LEN=1;MEANALT=1.36559;MQM=47.7358;MQMR=45.0684;NS=93;NUMALT=1;ODDS=0.681838;PAIRED=0;PAIREDR=0;PAO=3.5;PQA=121;PQR=0;PRO=0;QA=114628;QR=47092;RO=1330;RPL=3213;RPP=6979.95;RPPR=2891.07;RPR=0;RUN=1;SAF=0;SAP=6979.95;SAR=3213;SRF=0;SRP=2891.07;SRR=1330;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:19,23:19:678:23:814:-59.6964,0,-46.8967	0/1:35:13,21:13:454:21:752:-56.6906,0,-29.6001	0/1:109:62,46:62:2178:46:1617:-110.419,0,-156.878	0/1:119:58,61:58:2060:61:2180:-159.658,0,-147.119	1/1:26:0,26:0:0:26:935:-83.6373,-7.82678,0	1/1:9:0,9:0:0:9:309:-27.8505,-2.70927,0	1/1:20:0,20:0:0:20:716:-64.3746,-6.0206,0	0/1:91:50,41:50:1776:41:1453:-101.761,0,-128.563	1/1:51:0,51:0:0:51:1813:-161.45,-15.3525,0	0/1:39:14,25:14:494:25:900:-68.6424,0,-32.0424	1/1:43:0,42:0:0:42:1512:-134.801,-12.6433,0	1/1:92:0,92:0:0:92:3274:-289.471,-27.6948,0	0/1:66:32,33:32:1138:33:1180:-85.3928,0,-79.0995	0/1:46:19,27:19:678:27:967:-72.289,0,-46.2218	0/1:53:18,34:18:645:34:1207:-91.3168,0,-41.887	1/1:52:0,51:0:0:51:1828:-163.161,-15.3525,0	1/1:19:0,19:0:0:19:684:-61.2156,-5.71957,0	1/1:18:0,18:0:0:18:648:-57.8643,-5.41854,0	0/1:26:17,9:17:611:9:321:-20.7731,0,-46.3199	0/1:38:18,20:18:639:20:716:-52.6917,0,-45.5633	1/1:121:0,120:0:0:120:4293:-381.386,-36.1236,0	0/1:40:26,13:26:921:13:464:-29.628,0,-70.7218	1/1:25:0,24:0:0:24:864:-77.1726,-7.22472,0	1/1:38:0,37:0:0:37:1324:-118.078,-11.1381,0	0/1:48:19,29:19:678:29:1023:-76.715,0,-45.4237	0/1:82:39,43:39:1359:43:1508:-110.433,0,-97.0917	1/1:107:0,107:0:0:107:3834:-340.989,-32.2102,0	1/1:16:0,15:0:0:15:526:-46.51,-4.51545,0	0/1:92:44,48:44:1558:48:1724:-126.793,0,-111.351	1/1:38:0,38:0:0:38:1355:-120.912,-11.4391,0	1/1:24:1,23:1:32:23:815:-69.919,-4.03823,0	0/1:5:3,2:3:107:2:72:-5.28437,0,-8.34679	1/1:14:0,14:0:0:14:494:-43.9503,-4.21442,0	1/1:4:0,3:0:0:3:108:-9.63507,-0.90309,0	0/1:6:4,2:4:144:2:72:-4.95519,0,-11.2216	0/1:11:6,5:6:215:5:180:-13.0583,0,-15.9395	0/1:153:81,70:81:2858:70:2493:-177.909,0,-208.52	0/1:65:38,27:38:1356:27:940:-64.5575,0,-100.488	0/1:32:16,16:16:574:16:572:-41.5331,0,-41.2288	1/1:4:0,4:0:0:4:144:-13.2217,-1.20412,0	0/1:50:22,28:22:784:28:1008:-75.2578,0,-53.6092	0/1:27:11,16:11:377:16:572:-43.3567,0,-25.3689	0/1:89:48,39:48:1700:39:1394:-97.7242,0,-124.689	0/1:33:25,8:25:882:8:288:-16.1795,0,-68.8504	0/1:36:13,21:13:466:21:737:-55.5404,0,-31.3321	1/1:65:0,62:0:0:62:2228:-199.633,-18.6639,0	1/1:65:0,61:0:0:61:2173:-192.565,-18.3628,0	0/1:119:71,47:71:2479:47:1677:-114.051,0,-184.888	1/1:63:0,60:0:0:60:2151:-192.35,-18.0618,0	1/1:28:0,28:0:0:28:978:-86.5072,-8.42884,0	1/1:59:0,59:0:0:59:2120:-189.902,-17.7608,0	1/1:5:0,5:0:0:5:180:-16.482,-1.50515,0	0/1:120:38,81:38:1352:81:2887:-220.318,0,-82.1318	1/1:6:0,6:0:0:6:216:-19.5889,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.76137,-0.60206,0	0/1:67:38,28:38:1336:28:1005:-69.558,0,-97.3691	0/1:30:15,14:15:533:14:496:-34.2989,0,-38.6976	.:.:.:.:.:.:.:.	1/1:21:0,21:0:0:21:752:-67.825,-6.32163,0	1/1:25:0,25:0:0:25:876:-77.9844,-7.52575,0	1/1:77:0,77:0:0:77:2766:-247.528,-23.1793,0	0/1:4:1,3:1:35:3:108:-8.82842,0,-2.26932	1/1:112:0,111:0:0:111:3953:-353.737,-33.4143,0	1/1:45:1,44:1:34:44:1567:-136.168,-10.1676,0	0/1:20:10,10:10:356:10:352:-25.4126,0,-25.9765	1/1:29:0,29:0:0:29:1037:-92.7761,-8.72987,0	0/1:91:49,42:49:1738:42:1498:-106.66,0,-126.107	0/1:72:44,28:44:1553:28:993:-66.8639,0,-113.928	0/1:29:10,19:10:360:19:683:-52.1751,0,-23.5616	1/1:30:0,28:0:0:28:997:-88.4821,-8.42884,0	0/1:30:18,12:18:647:12:428:-29.7547,0,-49.2306	0/1:13:6,7:6:215:7:243:-17.9271,0,-15.6017	1/1:72:0,72:0:0:72:2564:-226.907,-21.6742,0	0/1:64:37,27:37:1308:27:964:-66.463,0,-94.9391	1/1:67:0,67:0:0:67:2374:-210.725,-20.169,0	1/1:95:1,94:1:36:94:3377:-298.38,-25.031,0	0/1:36:16,20:16:576:20:714:-52.4765,0,-40.2334	1/1:57:0,57:0:0:57:2034:-180.712,-17.1587,0	1/1:10:0,10:0:0:10:357:-31.7186,-3.0103,0	1/1:59:0,59:0:0:59:2106:-186.898,-17.7608,0	0/1:45:25,18:25:883:18:644:-44.3953,0,-64.9837	0/1:130:73,56:73:2563:56:2004:-140.532,0,-187.512	1/1:38:0,38:0:0:38:1368:-122.551,-11.4391,0	0/1:39:23,16:23:806:16:576:-39.9906,0,-59.3995	0/1:29:17,12:17:608:12:432:-30.3254,0,-45.5375	0/1:82:46,36:46:1636:36:1259:-87.5953,0,-121.3	1/1:29:0,29:0:0:29:1038:-92.0604,-8.72987,0	1/1:43:0,42:0:0:42:1507:-133.723,-12.6433,0	1/1:41:0,39:0:0:39:1394:-123.457,-11.7402,0	0/1:28:15,12:15:535:12:431:-30.1711,0,-39.1337	0/1:92:37,55:37:1316:55:1959:-146.572,0,-88.1386	0/1:36:23,12:23:825:12:431:-27.3152,0,-62.6522	1/1:59:0,58:0:0:58:2057:-183.675,-17.4597,0	1/1:58:0,55:0:0:55:1972:-175.499,-16.5567,0
chr07	21527675	.	C	G	114867	PASS	AB=0.753714;ABP=1696.58;AC=149;AF=0.792553;AN=188;AO=8266;CIGAR=1X;DP=9035;DPB=9035;DPRA=0;EPP=17952.4;EPPR=1657.67;GTI=14;LEN=1;MEANALT=1.07447;MQM=27.5794;MQMR=39.0118;NS=94;NUMALT=1;ODDS=1.36373;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=295584;QR=27266;RO=762;RPL=0;RPP=17952.4;RPPR=1657.67;RPR=8266;RUN=1;SAF=8266;SAP=17952.4;SAR=0;SRF=762;SRP=1657.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:15,15:15:540:15:540:-28.1814,0,-37.9502	1/1:139:8,131:8:288:131:4681:-296.61,-16.6254,0	1/1:72:5,67:5:180:67:2400:-148.508,-5.7835,0	0/1:213:56,157:56:1996:157:5594:-319.583,0,-106.093	1/1:87:0,87:0:0:87:3128:-208.433,-26.1896,0	1/1:65:0,65:0:0:65:2320:-159.974,-19.567,0	1/1:114:0,114:0:0:114:4073:-279.585,-34.3174,0	0/1:137:32,105:32:1136:105:3772:-217.457,0,-55.5076	1/1:111:0,111:0:0:111:3961:-272.449,-33.4143,0	0/1:89:32,57:32:1132:57:2048:-114.076,0,-70.2924	1/1:40:0,40:0:0:40:1428:-98.1434,-12.0412,0	0/1:57:31,26:31:1100:26:913:-46.0209,0,-75.8691	0/1:45:23,22:23:824:22:788:-40.4166,0,-56.0941	0/1:54:14,40:14:504:40:1428:-79.1051,0,-27.3039	0/1:42:17,25:17:612:25:896:-48.9102,0,-40.9594	1/1:52:0,52:0:0:52:1868:-125.015,-15.6536,0	1/1:50:0,50:0:0:50:1792:-123.256,-15.0515,0	1/1:53:0,53:0:0:53:1904:-130.592,-15.9546,0	0/1:20:7,13:7:252:13:468:-26.2666,0,-16.0881	0/1:125:22,103:22:788:103:3700:-215.095,0,-31.2237	1/1:144:0,143:0:0:143:5101:-339.837,-43.0473,0	1/1:111:0,111:0:0:111:3984:-265.308,-33.4143,0	1/1:101:0,101:0:0:101:3620:-248.458,-30.404,0	1/1:175:0,175:0:0:175:6231:-416.039,-52.6803,0	0/1:57:11,46:11:392:46:1603:-90.8897,0,-14.9197	0/1:255:59,195:59:2101:195:6981:-386.335,0,-98.9257	1/1:244:0,244:0:0:244:8733:-582.195,-73.4513,0	1/1:31:1,30:1:36:30:1080:-68.1788,-5.73366,0	0/1:259:55,204:55:1972:204:7286:-406.897,0,-87.0454	1/1:279:0,279:0:0:279:9955:-663.059,-83.9874,0	1/1:156:0,156:0:0:156:5565:-382.447,-46.9607,0	1/1:1:0,1:0:0:1:36:-2.6486,-0.30103,0	1/1:8:0,8:0:0:8:288:-19.3348,-2.40824,0	1/1:6:0,6:0:0:6:212:-14.8352,-1.80618,0	0/1:4:1,3:1:36:3:108:-6.45725,0,-2.25037	1/1:3:0,3:0:0:3:108:-7.66137,-0.90309,0	1/1:179:0,179:0:0:179:6416:-426.047,-53.8844,0	0/1:159:25,134:25:900:134:4774:-269.211,0,-28.6196	0/1:24:9,15:9:324:15:536:-29.9137,0,-20.4477	1/1:3:0,3:0:0:3:108:-7.41608,-0.90309,0	0/1:127:13,114:13:468:114:4076:-233.652,0,-0.0572996	0/1:15:5,10:5:180:10:360:-19.5868,0,-11.2331	0/1:85:9,75:9:324:75:2696:-153.67,0,-1.80915	0/1:40:12,28:12:432:28:1008:-57.1847,0,-23.8696	0/1:48:20,28:20:712:28:1008:-54.3632,0,-47.9085	1/1:130:0,130:0:0:130:4664:-311.101,-39.1339,0	1/1:151:0,150:0:0:150:5361:-367.79,-45.1545,0	0/1:181:33,148:33:1180:148:5312:-310.466,0,-46.4495	1/1:166:0,166:0:0:166:5925:-408.081,-49.971,0	1/1:255:0,255:0:0:255:9096:-623.938,-76.7627,0	1/1:119:0,119:0:0:119:4257:-284.004,-35.8226,0	1/1:7:0,7:0:0:7:248:-17.4371,-2.10721,0	0/1:67:7,60:7:252:60:2133:-126.582,0,-1.90253	1/1:47:0,47:0:0:47:1688:-112.155,-14.1484,0	0/1:6:4,2:4:144:2:72:-3.3926,0,-10.9754	0/1:112:18,94:18:648:94:3361:-189.991,0,-20.0119	1/1:27:2,25:2:72:25:877:-54.4314,-1.51449,0	1/1:3:0,3:0:0:3:108:-7.41608,-0.90309,0	1/1:13:0,13:0:0:13:468:-31.333,-3.91339,0	1/1:102:0,102:0:0:102:3664:-243.521,-30.7051,0	1/1:120:0,120:0:0:120:4296:-293.895,-36.1236,0	0/1:4:1,3:1:36:3:108:-6.45725,0,-2.27658	1/1:268:0,268:0:0:268:9575:-637.847,-80.676,0	1/1:409:1,408:1:36:408:14590:-997.479,-119.641,0	0/1:55:6,49:6:216:49:1756:-100.468,0,-2.27316	1/1:132:0,132:0:0:132:4744:-324.977,-39.736,0	0/1:104:21,83:21:756:83:2980:-172.195,0,-34.3032	0/1:52:18,33:18:648:33:1173:-65.1071,0,-39.3849	0/1:4:2,2:2:72:2:72:-3.82822,0,-4.56447	1/1:65:0,65:0:0:65:2317:-159.55,-19.567,0	0/1:81:21,59:21:752:59:2105:-115.49,0,-38.9745	1/1:12:0,12:0:0:12:432:-29.8246,-3.61236,0	1/1:149:0,149:0:0:149:5327:-364.851,-44.8535,0	0/1:49:18,31:18:644:31:1097:-61.1441,0,-41.2558	1/1:168:0,168:0:0:168:5990:-399.577,-50.573,0	1/1:286:0,286:0:0:286:10249:-703.133,-86.0946,0	1/1:63:4,59:4:144:59:2105:-131.654,-6.18327,0	1/1:173:0,173:0:0:173:6204:-425.7,-52.0782,0	1/1:13:0,13:0:0:13:468:-32.2872,-3.91339,0	1/1:167:0,167:0:0:167:5988:-397.609,-50.272,0	0/1:90:15,74:15:540:74:2652:-155.866,0,-20.0649	1/1:209:0,209:0:0:209:7496:-514.327,-62.9153,0	1/1:109:0,109:0:0:109:3886:-266.446,-32.8123,0	0/1:50:21,29:21:752:29:1040:-56.5633,0,-50.2501	0/1:62:18,44:18:640:44:1576:-89.4036,0,-36.5968	0/1:131:36,95:36:1296:95:3385:-194.665,0,-73.6877	1/1:39:0,39:0:0:39:1388:-95.2408,-11.7402,0	1/1:63:0,63:0:0:63:2238:-155.423,-18.9649,0	1/1:66:0,66:0:0:66:2342:-161.282,-19.868,0	0/1:19:2,17:2:72:17:612:-34.9043,0,-0.785273	0/1:44:13,31:13:468:31:1100:-60.0695,0,-26.4497	0/1:33:19,14:19:669:14:504:-24.4009,0,-47.12	1/1:175:0,175:0:0:175:6260:-429.875,-52.6803,0	1/1:76:0,76:0:0:76:2720:-186.414,-22.8783,0
chr07	21527677	.	T	G	5486.76	PASS	AB=0.251123;ABP=1560.53;AC=38;AF=0.202128;AN=188;AO=761;CIGAR=1X;DP=9045;DPB=9045;DPRA=0.796758;EPP=1655.5;EPPR=17991.5;GTI=13;LEN=1;MEANALT=1;MQM=39.0447;MQMR=27.5844;NS=94;NUMALT=1;ODDS=1.72765;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27233;QR=297063;RO=8284;RPL=0;RPP=1655.5;RPPR=17991.5;RPR=761;RUN=1;SAF=761;SAP=1655.5;SAR=0;SRF=8284;SRP=17991.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:15,16:15:540:16:572:-40.5268,0,-27.8804	0/0:137:129,8:129:4609:8:288:0,-16.0233,-291.708	0/0:72:67,5:67:2393:5:180:0,-5.7835,-148.011	0/1:212:157,55:157:5644:55:1968:-103.959,0,-321.538	0/0:89:89,0:89:3192:0:0:0,-26.7917,-212.758	0/0:66:66,0:66:2360:0:0:0,-19.868,-162.098	0/0:115:115,0:115:4105:0:0:0,-34.6184,-282.007	0/1:140:108,32:108:3849:32:1148:-55.4527,0,-223.004	0/0:113:113,0:113:4048:0:0:0,-34.0164,-278.041	0/1:88:56,32:56:1997:32:1148:-72.2449,0,-111.27	0/0:41:41,0:41:1463:0:0:0,-12.3422,-100.492	0/1:56:25,31:25:900:31:1103:-76.6312,0,-44.6526	0/1:45:22,23:22:788:23:824:-56.3083,0,-40.4166	0/1:53:40,13:40:1436:13:468:-24.4957,0,-79.5176	0/1:43:25,18:25:900:18:639:-42.3946,0,-48.6504	0/0:53:53,0:53:1908:0:0:0,-15.9546,-127.46	0/0:50:50,0:50:1796:0:0:0,-15.0515,-123.086	0/0:56:56,0:56:2016:0:0:0,-16.8577,-138.053	0/1:20:13,7:13:464:7:252:-16.0881,0,-26.1926	0/1:125:102,23:102:3652:23:828:-34.5576,0,-212.412	0/0:145:145,0:145:5212:0:0:0,-43.6493,-345.841	0/0:113:113,0:113:4056:0:0:0,-34.0164,-270.076	0/0:100:100,0:100:3592:0:0:0,-30.103,-246.142	0/0:174:174,0:174:6245:0:0:0,-52.3792,-415.703	0/1:56:45,11:45:1604:11:391:-15.3535,0,-90.4311	0/1:253:195,58:195:7008:58:2069:-96.5842,0,-387.665	0/0:245:245,0:245:8792:0:0:0,-73.7523,-585.294	0/0:31:31,0:31:1116:0:0:0,-9.33193,-75.0186	0/1:258:203,55:203:7284:55:1972:-87.5423,0,-406.284	0/0:282:282,0:282:10090:0:0:0,-84.8905,-670.82	0/0:161:161,0:161:5749:0:0:0,-48.4658,-394.81	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.6486	0/0:8:8,0:8:288:0:0:0,-2.40824,-19.3348	0/0:6:6,0:6:216:0:0:0,-1.80618,-14.8864	0/1:4:3,1:3:108:1:36:-2.25037,0,-6.45725	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.66137	0/0:180:180,0:180:6464:0:0:0,-54.1854,-428.618	0/1:158:132,26:132:4744:26:928:-31.455,0,-265.774	0/1:24:15,9:15:540:9:316:-19.8676,0,-29.9876	0/0:3:3,0:3:93:0:0:0,-0.90309,-6.81387	0/0:128:115,13:115:4128:13:468:0,-0.243729,-236.244	0/1:14:10,4:10:360:4:144:-8.45291,0,-19.8878	0/1:86:77,9:77:2737:9:324:-1.47884,0,-157.262	0/1:40:28,12:28:1008:12:424:-23.6545,0,-57.1847	0/1:48:28,20:28:1004:20:720:-48.4669,0,-54.2896	0/0:132:132,0:132:4728:0:0:0,-39.736,-315.619	0/0:153:153,0:153:5500:0:0:0,-46.0576,-376.087	0/1:180:148,32:148:5316:32:1144:-43.6176,0,-310.841	0/0:168:168,0:168:6020:0:0:0,-50.573,-413.774	0/0:253:253,0:253:9072:0:0:0,-76.1606,-621.425	0/0:119:119,0:119:4280:0:0:0,-35.8226,-284.769	0/0:7:7,0:7:248:0:0:0,-2.10721,-17.4371	0/1:70:63,7:63:2260:7:252:-0.999442,0,-133.785	0/0:48:48,0:48:1724:0:0:0,-14.4494,-114.558	0/1:6:2,4:2:72:4:140:-10.681,0,-3.3926	0/1:110:92,18:92:3308:18:648:-20.614,0,-186.468	0/0:26:24,2:24:860:2:72:0,-1.21346,-52.6885	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.41608	0/0:14:14,0:14:500:0:0:0,-4.21442,-33.6553	0/0:103:103,0:103:3700:0:0:0,-31.0061,-245.905	0/0:120:120,0:120:4312:0:0:0,-36.1236,-294.166	0/1:4:3,1:3:108:1:36:-2.27658,0,-6.45725	0/0:267:267,0:267:9584:0:0:0,-80.375,-636.262	0/0:406:405,1:405:14502:1:36:0,-118.737,-990.132	0/1:54:48,6:48:1724:6:216:-2.57419,0,-98.4467	0/0:132:132,0:132:4732:0:0:0,-39.736,-324.725	0/1:105:84,21:84:3012:21:752:-33.7016,0,-174.419	0/1:51:33,18:33:1184:18:644:-39.3611,0,-65.9756	0/1:4:2,2:2:72:2:72:-4.56447,0,-3.82822	0/0:65:65,0:65:2328:0:0:0,-19.5669,-160.121	0/1:82:61,21:61:2177:21:744:-38.1249,0,-119.92	0/0:12:12,0:12:428:0:0:0,-3.61236,-29.7505	0/0:150:150,0:150:5384:0:0:0,-45.1545,-368.061	0/1:50:31,19:31:1108:19:680:-44.0776,0,-61.4149	0/0:166:166,0:166:5941:0:0:0,-49.971,-395.223	0/0:282:282,0:282:10108:0:0:0,-84.8905,-693.523	0/0:64:59,5:59:2120:5:180:0,-3.37526,-129.189	0/0:171:171,0:171:6144:0:0:0,-51.4761,-421.018	0/0:13:13,0:13:464:0:0:0,-3.91339,-32.2132	0/0:166:166,0:166:5945:0:0:0,-49.971,-394.7	0/1:88:73,15:73:2616:15:540:-20.6442,0,-153.978	0/0:210:210,0:210:7552:0:0:0,-63.2163,-517.601	0/0:110:110,0:110:3956:0:0:0,-33.1133,-270.27	0/1:50:29,21:29:1044:21:752:-50.2501,0,-56.637	0/1:63:45,18:45:1616:18:643:-36.5767,0,-91.6387	0/1:130:94,36:94:3380:36:1288:-73.389,0,-193.395	0/0:39:39,0:39:1395:0:0:0,-11.7402,-95.2273	0/0:65:65,0:65:2340:0:0:0,-19.5669,-161.637	0/0:66:66,0:66:2359:0:0:0,-19.868,-162.236	0/1:19:17,2:17:603:2:72:-0.785273,0,-34.7423	0/1:43:30,13:30:1071:13:468:-26.7507,0,-58.0188	0/1:32:14,18:14:504:18:644:-45.4532,0,-24.7019	0/0:172:172,0:172:6184:0:0:0,-51.7772,-422.892	0/0:76:76,0:76:2728:0:0:0,-22.8783,-186.537
chr07	21527690	.	TT	CC,CT	129841	PASS	AB=0.74854,0.248025;ABP=1564.9,1608.37;AC=150,38;AF=0.797872,0.202128;AN=188;AO=8309,760;CIGAR=2X,1X1M;DP=9099;DPB=9099;DPRA=0,0.837068;EPP=18045.8,1636;EPPR=5.18177;GTI=10;LEN=2,1;MEANALT=1.74468,2.25532;MQM=27.576,39.0184;MQMR=60;NS=94;NUMALT=2;ODDS=1198.61;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=290984,26656;QR=36;RO=1;RPL=0,2;RPP=18045.8,1636;RPPR=5.18177;RPR=8309,758;RUN=1,1;SAF=8309,760;SAP=18045.8,1653.33;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:31:0,15,16:0:0:15,16:532,572:-77.3109,-45.0422,-40.5268,-32.5758,0,-27.7593	1/1:138:0,131,7:0:0:131,7:4570,252:-318.29,-39.4349,0,-298.63,-19.4334,-296.523	1/1:71:0,65,5:0:0:65,5:2263,180:-157.666,-19.567,0,-143.62,-5.46703,-142.115	1/2:214:0,159,55:0:0:159,55:5600,1929:-488.35,-149.216,-101.352,-339.452,0,-322.896	1/1:89:0,89,0:0:0:89,0:3154,0:-212.042,-26.7917,0,-212.042,-26.7917,-212.042	1/1:66:0,65,0:0:0:65,0:2276,0:-158.196,-19.567,0,-158.196,-19.567,-158.196	1/1:117:0,117,0:0:0:117,0:4105,0:-285.055,-35.2205,0,-285.055,-35.2205,-285.055	1/2:139:0,108,31:0:0:108,31:3715,1084:-311.965,-84.2263,-51.715,-228.058,0,-218.726	1/1:113:0,113,0:0:0:113,0:3939,0:-274.934,-34.0164,0,-274.934,-34.0164,-274.934	1/2:89:0,57,32:0:0:57,32:2014,1114:-209.38,-86.9927,-69.834,-122.7,0,-113.067	1/1:41:0,41,0:0:0:41,0:1403,0:-99.1906,-12.3422,0,-99.1906,-12.3422,-99.1906	1/2:56:0,26,30:0:0:26,30:880,1038:-133.936,-79.6009,-71.7741,-54.6293,0,-45.5984	1/2:44:0,22,22:0:0:22,22:766,768:-106.042,-59.5534,-52.9307,-46.7886,0,-40.1659	1/2:53:0,39,14:0:0:39,14:1381,504:-119.963,-39.3451,-27.605,-80.9398,0,-76.7254	1/2:43:0,24,18:0:0:24,18:845,632:-100.67,-49.5495,-42.3247,-51.1542,0,-45.7356	1/1:53:0,52,1:0:0:52,1:1830,36:-123.11,-15.6536,0,-120.328,-12.531,-120.027	1/1:51:0,51,0:0:0:51,0:1768,0:-123.341,-15.3525,0,-123.341,-15.3525,-123.341	1/1:55:0,55,0:0:0:55,0:1932,0:-134.403,-16.5567,0,-134.403,-16.5567,-134.403	1/2:20:0,13,7:0:0:13,7:461,248:-47.635,-19.7105,-15.7971,-28.2415,0,-26.1342	1/2:124:0,102,22:0:0:102,22:3563,784:-278.803,-62.0423,-31.3372,-217.093,0,-210.47	1/1:145:0,145,0:0:0:145,0:5103,0:-343.531,-43.6494,0,-343.531,-43.6494,-343.531	1/1:113:0,113,0:0:0:113,0:3952,0:-267.366,-34.0164,0,-267.366,-34.0164,-267.366	1/1:101:0,101,0:0:0:101,0:3553,0:-246.549,-30.404,0,-246.549,-30.404,-246.549	1/1:177:0,176,0:0:0:176,0:6213,0:-417.756,-52.9813,0,-417.756,-52.9813,-417.756	1/2:57:0,46,11:0:0:46,11:1587,368:-122.059,-28.1289,-14.2815,-94.2341,0,-90.9227	1/2:254:0,195,58:0:0:195,58:6757,2027:-552.068,-153.927,-95.2266,-398.187,0,-380.728	1/1:249:0,249,0:0:0:249,0:8783,0:-591.281,-74.9565,0,-591.281,-74.9565,-591.281	1/1:31:1,30,0:1:36:30,0:1050,0:-67.5946,-5.73366,0,-67.8957,-9.0309,-70.8362	1/2:259:0,204,55:0:0:204,55:7147,1935:-567.319,-147.358,-85.9478,-420.277,0,-403.72	1/1:285:0,282,0:0:0:282,0:9862,0:-665.456,-84.8905,0,-665.456,-84.8905,-665.456	1/1:159:0,158,0:0:0:158,0:5482,0:-382.257,-47.5627,0,-382.257,-47.5627,-382.257	1/1:1:0,1,0:0:0:1,0:36,0:-2.6486,-0.30103,0,-2.6486,-0.30103,-2.6486	1/1:8:0,8,0:0:0:8,0:283,0:-19.2491,-2.40824,0,-19.2491,-2.40824,-19.2491	1/1:6:0,6,0:0:0:6,0:212,0:-14.8352,-1.80618,0,-14.8352,-1.80618,-14.8352	1/2:4:0,3,1:0:0:3,1:106,36:-9.55336,-3.15346,-2.25037,-6.72712,0,-6.42609	1/1:3:0,3,0:0:0:3,0:108,0:-7.66137,-0.90309,0,-7.66137,-0.90309,-7.66137	1/1:179:0,179,0:0:0:179,0:6258,0:-422.147,-53.8844,0,-422.147,-53.8844,-422.147	1/2:159:0,132,26:0:0:132,26:4604,916:-340.643,-70.5556,-30.8196,-270.143,0,-262.316	1/2:24:0,15,9:0:0:15,9:522,312:-56.0914,-24.4572,-19.9418,-31.9417,0,-29.2325	1/1:3:0,3,0:0:0:3,0:108,0:-7.41608,-0.90309,0,-7.41608,-0.90309,-7.41608	1/1:129:0,115,13:0:0:115,13:4062,422:-272.436,-34.6185,0,-240.472,-2.6195,-236.558	1/2:15:0,10,5:0:0:10,5:351,176:-34.6096,-13.9651,-10.9548,-20.9565,0,-19.4514	1/2:86:0,77,9:0:0:77,9:2688,311:-182.23,-24.1554,-0.976124,-158.395,0,-155.686	1/2:40:0,28,11:0:0:28,11:987,380:-89.2987,-29.433,-21.0041,-59.9014,0,-56.59	1/2:48:0,28,20:0:0:28,20:968,720:-115.897,-56.8957,-48.4669,-59.3152,0,-53.2946	1/1:133:0,130,3:0:0:130,3:4616,108:-307.739,-39.1339,0,-299.494,-30.5517,-298.591	1/1:154:0,154,0:0:0:154,0:5423,0:-375.582,-46.3586,0,-375.582,-46.3586,-375.582	1/2:182:0,146,33:0:0:146,33:5139,1149:-401.576,-89.5043,-45.5539,-312.141,0,-302.207	1/1:166:0,166,0:0:0:166,0:5802,0:-404.762,-49.971,0,-404.762,-49.971,-404.762	1/1:255:0,255,0:0:0:255,0:8986,0:-623.096,-76.7627,0,-623.096,-76.7627,-623.096	1/1:120:0,120,0:0:0:120,0:4220,0:-284.585,-36.1236,0,-284.585,-36.1236,-284.585	1/1:7:0,7,0:0:0:7,0:247,0:-17.4089,-2.10721,0,-17.4089,-2.10721,-17.4089	1/2:71:0,64,7:0:0:64,7:2219,252:-155.505,-19.9643,-0.698411,-135.879,0,-133.771	1/1:48:0,48,0:0:0:48,0:1670,0:-113.106,-14.4494,0,-113.106,-14.4494,-113.106	1/2:5:0,2,3:0:0:2,3:70,108:-13.0331,-8.76948,-8.16742,-4.56501,0,-3.66192	1/2:112:0,94,18:0:0:94,18:3318,621:-241.841,-47.6317,-19.3349,-194.524,0,-189.106	1/1:26:0,24,2:0:0:24,2:837,72:-58.367,-7.22472,0,-52.6978,-1.21346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chr07	21597556	.	C	T	181998	PASS	AB=0.494234;ABP=4.81314;AC=135;AF=0.725806;AN=186;AO=8634;CIGAR=1X;DP=11811;DPB=11811;DPRA=18.3292;EPP=18751.5;EPPR=6899.61;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9341;MQMR=59.9902;NS=93;NUMALT=1;ODDS=9.21253;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=308329;QR=113455;RO=3176;RPL=39;RPP=18414.3;RPPR=6650.02;RPR=8595;RUN=1;SAF=39;SAP=18414.3;SAR=8595;SRF=29;SRP=6650.02;SRR=3147;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:31,29:31:1101:29:1036:-75.4921,0,-81.3366	0/1:205:100,105:100:3554:105:3761:-276.941,0,-258.356	0/1:183:103,80:103:3696:80:2860:-202.547,0,-277.753	0/1:248:129,119:129:4598:119:4276:-310.361,0,-339.327	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:34:0,34:0:0:34:1209:-109.114,-10.235,0	1/1:153:0,153:0:0:153:5461:-491.615,-46.0576,0	0/1:158:76,82:76:2702:82:2932:-216.551,0,-195.859	1/1:138:0,138:0:0:138:4926:-443.436,-41.5421,0	0/1:174:77,97:77:2756:97:3435:-256.981,0,-195.897	1/1:58:0,58:0:0:58:2061:-185.759,-17.4597,0	1/1:103:1,102:1:36:102:3656:-325.645,-27.4078,0	0/1:76:42,34:42:1504:34:1220:-87.2285,0,-112.776	0/1:124:64,60:64:2300:60:2152:-156.619,0,-169.933	0/1:79:41,38:41:1472:38:1360:-98.9192,0,-108.995	1/1:99:0,99:0:0:99:3513:-316.379,-29.802,0	1/1:105:0,105:0:0:105:3761:-338.687,-31.6082,0	1/1:91:0,91:0:0:91:3268:-294.34,-27.3937,0	0/1:45:22,23:22:784:23:794:-58.2269,0,-57.3376	0/1:173:90,83:90:3221:83:2939:-212.662,0,-238.032	1/1:247:0,247:0:0:247:8850:-796.48,-74.3544,0	0/1:151:94,57:94:3365:57:2052:-139.478,0,-257.609	1/1:96:2,94:2:72:94:3384:-297.937,-22.0622,0	1/1:187:1,186:1:36:186:6667:-596.378,-52.6943,0	0/1:99:52,47:52:1864:47:1681:-121.482,0,-138.237	0/1:427:215,212:215:7697:212:7571:-552.886,0,-564.22	1/1:249:0,249:0:0:249:8927:-803.092,-74.9565,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:265:131,134:131:4665:134:4767:-349.413,0,-339.967	1/1:227:2,225:2:72:225:7970:-710.44,-61.4971,0	1/1:181:0,181:0:0:181:6482:-583.462,-54.4864,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:238:132,106:132:4698:106:3812:-271.631,0,-351.334	0/1:308:146,162:146:5214:162:5760:-425.796,0,-376.679	0/1:83:37,46:37:1324:46:1642:-123.083,0,-94.4766	.:.:.:.:.:.:.:.	0/1:159:60,99:60:2137:99:3556:-272.383,0,-144.732	0/1:71:50,21:50:1762:21:756:-46.9941,0,-137.486	0/1:125:61,64:61:2181:64:2300:-169.632,0,-158.925	0/1:82:44,38:44:1572:38:1353:-97.3839,0,-117.087	0/1:82:41,41:41:1453:41:1464:-107.372,0,-106.379	1/1:140:0,140:0:0:140:4989:-449.145,-42.1442,0	1/1:133:0,133:0:0:133:4750:-427.655,-40.037,0	0/1:213:104,109:104:3713:109:3875:-284.822,0,-270.251	1/1:148:0,148:0:0:148:5275:-474.883,-44.5524,0	1/1:188:0,188:0:0:188:6726:-605.327,-56.5936,0	1/1:329:0,329:0:0:329:11706:-1053.39,-99.0389,0	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:225:108,117:108:3884:117:4199:-310.341,0,-282.021	1/1:43:0,43:0:0:43:1535:-138.352,-12.9443,0	0/1:35:17,18:17:597:18:640:-47.3933,0,-43.5201	0/1:146:78,68:78:2777:68:2429:-174.891,0,-206.22	0/1:49:28,21:28:1004:21:756:-53.6168,0,-75.9254	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	1/1:102:0,102:0:0:102:3607:-324.833,-30.7051,0	1/1:168:0,168:0:0:168:5988:-539.011,-50.573,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:278:1,277:1:36:277:9898:-887.157,-80.0881,0	1/1:223:4,219:4:129:219:7770:-687.335,-55.202,0	0/1:102:42,60:42:1504:60:2130:-161.26,0,-104.95	1/1:97:0,97:0:0:97:3450:-310.654,-29.1999,0	0/1:224:124,100:124:4456:100:3575:-254.525,0,-333.778	0/1:74:42,32:42:1493:32:1133:-80.0004,0,-112.386	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	1/1:107:0,107:0:0:107:3829:-344.805,-32.2102,0	0/1:127:54,73:54:1931:73:2605:-196.466,0,-135.835	0/1:58:27,31:27:968:31:1097:-81.5783,0,-69.9776	1/1:156:0,156:0:0:156:5570:-501.421,-46.9607,0	0/1:83:33,50:33:1169:50:1800:-137.297,0,-80.5298	1/1:217:0,217:0:0:217:7737:-695.69,-65.3235,0	1/1:175:0,175:0:0:175:6277:-565.02,-52.6803,0	0/1:150:64,86:64:2256:86:3057:-230.204,0,-158.147	1/1:139:0,139:0:0:139:4977:-448.076,-41.8432,0	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	1/1:108:0,108:0:0:108:3854:-347.031,-32.5112,0	0/1:152:75,77:75:2696:77:2730:-200.167,0,-197.127	0/1:276:153,123:153:5492:123:4424:-315.231,0,-411.321	1/1:144:1,143:1:36:143:5111:-456.532,-39.75,0	0/1:74:30,44:30:1080:44:1584:-120.575,0,-75.237	0/1:130:61,69:61:2169:69:2468:-183.24,0,-156.341	0/1:197:92,105:92:3276:105:3728:-276.361,0,-235.756	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:107:0,107:0:0:107:3832:-345.077,-32.2102,0	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	0/1:57:27,30:27:972:30:1061:-78.6407,0,-70.6392	0/1:97:58,38:58:2061:38:1338:-91.4583,0,-156.501	0/1:81:57,24:57:2048:24:849:-52.3444,0,-160.208	1/1:155:0,155:0:0:155:5553:-499.892,-46.6597,0	1/1:118:0,118:0:0:118:4217:-379.709,-35.5215,0
chr07	21709972	.	G	A	84050.2	PASS	AB=0.452578;ABP=76.1227;AC=137;AF=0.728723;AN=188;AO=4106;CIGAR=1X;DP=6167;DPB=6167;DPRA=22.0932;EPP=8746.2;EPPR=4419.94;GTI=5;LEN=1;MEANALT=1.03226;MQM=59.98;MQMR=59.9985;NS=94;NUMALT=1;ODDS=1.70731;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146884;QR=73470;RO=2058;RPL=4104;RPP=8901.71;RPPR=4428.58;RPR=2;RUN=1;SAF=18;SAP=8763.42;SAR=4088;SRF=1;SRP=4463.22;SRR=2057;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:26,4:26:924:4:140:-3.91368,0,-74.4468	0/1:60:38,22:38:1360:22:784:-52.8221,0,-104.639	0/1:174:97,77:97:3457:77:2744:-194.822,0,-258.962	0/1:179:106,73:106:3776:73:2609:-181.173,0,-286.154	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	1/1:95:0,95:0:0:95:3394:-305.674,-28.5979,0	0/1:98:43,55:43:1540:55:1972:-148.254,0,-109.392	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:57:26,31:26:936:31:1112:-83.2326,0,-67.4008	1/1:59:0,59:0:0:59:2093:-188.639,-17.7608,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:74:38,36:38:1338:36:1292:-94.3075,0,-98.4422	0/1:57:31,26:31:1107:26:924:-66.3189,0,-82.7814	0/1:33:17,16:17:603:16:572:-41.8794,0,-44.6655	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:87:0,87:0:0:87:3105:-279.677,-26.1896,0	1/1:40:1,39:1:32:39:1387:-121.929,-8.84189,0	0/1:40:16,24:16:576:24:864:-66.0237,0,-40.1338	0/1:123:75,48:75:2676:48:1707:-116.88,0,-204.059	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	0/1:87:60,27:60:2147:27:968:-61.2478,0,-167.307	1/1:56:1,55:1:36:55:1950:-172.177,-13.2594,0	0/1:68:28,40:28:1000:40:1428:-108.347,0,-69.8453	0/1:52:29,23:29:1044:23:824:-58.8298,0,-78.6212	0/1:175:101,74:101:3588:74:2660:-186.965,0,-270.449	1/1:117:0,117:0:0:117:4165:-375.028,-35.2205,0	1/1:32:0,32:0:0:32:1138:-102.729,-9.63296,0	0/1:175:111,64:111:3968:64:2300:-154.581,0,-304.631	1/1:115:3,112:3:108:112:4001:-350.203,-24.5433,0	1/1:91:0,90:0:0:90:3223:-290.069,-27.0927,0	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:146:72,74:72:2592:74:2660:-195.695,0,-189.578	0/1:173:86,86:86:3057:86:3095:-226.64,0,-223.222	0/1:62:31,31:31:1099:31:1104:-81.0062,0,-80.5556	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:183:117,66:117:4167:66:2364:-157.93,0,-320.126	0/1:30:13,17:13:459:17:612:-46.3825,0,-32.6132	0/1:80:37,43:37:1315:43:1544:-115.171,0,-94.5686	0/1:57:19,38:19:684:38:1351:-104.729,0,-44.7316	0/1:40:24,16:24:860:16:576:-40.1338,0,-65.6806	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:93:54,39:54:1940:39:1404:-98.6635,0,-146.88	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:64:0,64:0:0:64:2281:-205.55,-19.2659,0	1/1:113:0,113:0:0:113:4009:-360.999,-34.0164,0	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/1:119:77,42:77:2763:42:1504:-99.832,0,-213.088	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:93:41,52:41:1468:52:1860:-139.684,0,-104.42	0/1:47:26,21:26:936:21:744:-53.1359,0,-70.4111	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:44:0,44:0:0:44:1569:-141.499,-13.2453,0	1/1:116:0,116:0:0:116:4145:-373.233,-34.9195,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:82:0,82:0:0:82:2924:-263.394,-24.6845,0	1/1:93:2,91:2:72:91:3262:-286.964,-21.1591,0	0/1:40:19,21:19:671:21:743:-55.1521,0,-48.6746	1/1:31:0,31:0:0:31:1107:-99.9402,-9.33193,0	0/1:91:48,43:48:1715:43:1536:-111.139,0,-127.24	0/1:109:75,34:75:2692:34:1224:-77.6548,0,-209.712	0/1:29:11,18:11:396:18:640:-49.1994,0,-27.2529	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:82:38,44:38:1364:44:1574:-117.267,0,-98.3763	0/1:10:3,7:3:108:7:244:-19.2891,0,-7.06487	1/1:59:0,59:0:0:59:2113:-190.439,-17.7608,0	0/1:37:25,12:25:887:12:428:-27.7207,0,-69.01	1/1:114:0,114:0:0:114:4088:-368.105,-34.3174,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:101:51,50:51:1807:50:1800:-131.878,0,-132.507	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:62:38,24:38:1360:24:864:-59.4187,0,-104.037	0/1:103:64,39:64:2284:39:1400:-95.2931,0,-174.816	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	0/1:52:25,27:25:884:27:956:-70.6976,0,-64.2248	0/1:42:19,23:19:684:23:828:-62.2009,0,-49.2471	0/1:107:48,58:48:1707:58:2075:-154.899,0,-121.793	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:82:1,81:1:36:81:2894:-257.098,-21.0862,0	1/1:51:0,51:0:0:51:1832:-165.147,-15.3525,0	0/1:52:26,26:26:911:26:936:-68.9059,0,-66.6514	0/1:132:62,70:62:2228:70:2508:-186.236,0,-161.048	0/1:45:32,13:32:1144:13:459:-28.0984,0,-89.7232	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:59:0,59:0:0:59:2103:-189.539,-17.7608,0
chr07	21710005	.	T	C	98191.8	PASS	AB=0.452963;ABP=84.7214;AC=136;AF=0.723404;AN=188;AO=5312;CIGAR=1X;DP=7667;DPB=7667;DPRA=41.2097;EPP=11537.9;EPPR=5092.96;GTI=3;LEN=1;MEANALT=1.03226;MQM=39.7378;MQMR=40.4158;NS=94;NUMALT=1;ODDS=1.12487;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190302;QR=84074;RO=2352;RPL=0;RPP=11537.9;RPPR=5092.96;RPR=5312;RUN=1;SAF=5312;SAP=11537.9;SAR=0;SRF=2352;SRP=5110.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:3,12:3:108:12:432:-30.8014,0,-4.85376	0/1:139:88,51:88:3144:51:1836:-106.737,0,-219.271	0/1:88:49,39:49:1760:39:1400:-85.2015,0,-120.683	0/1:205:83,122:83:2960:122:4369:-313.729,0,-196.412	1/1:41:0,41:0:0:41:1476:-124.043,-12.3422,0	1/1:51:0,51:0:0:51:1824:-148.796,-15.3525,0	1/1:162:0,161:0:0:161:5761:-493.574,-48.4658,0	0/1:161:83,78:83:2960:78:2796:-179.573,0,-199.552	1/1:64:0,64:0:0:64:2300:-185.336,-19.2659,0	0/1:106:48,58:48:1704:58:2088:-146.962,0,-117.466	1/1:83:0,83:0:0:83:2964:-252.04,-24.9855,0	1/1:50:0,50:0:0:50:1782:-143.52,-15.0515,0	0/1:72:42,30:42:1508:30:1080:-66.0675,0,-104.124	0/1:108:73,35:73:2607:35:1259:-73.0432,0,-191.618	0/1:65:40,25:40:1436:25:896:-58.4218,0,-104.884	1/1:47:0,47:0:0:47:1688:-140.922,-14.1484,0	1/1:58:1,57:1:36:57:2044:-160.393,-14.1136,0	1/1:33:1,32:1:36:32:1152:-90.1821,-6.58784,0	0/1:56:36,20:36:1273:20:720:-41.5448,0,-88.6612	0/1:144:78,66:78:2768:66:2372:-161.846,0,-198.652	1/1:144:0,144:0:0:144:5152:-427.16,-43.3483,0	0/1:35:24,11:24:851:11:396:-24.0099,0,-62.899	1/1:54:1,53:1:36:53:1896:-155.704,-12.7529,0	0/1:83:33,50:33:1188:50:1792:-124.481,0,-76.6269	0/1:63:39,24:39:1392:24:864:-52.2917,0,-100.048	0/1:204:104,100:104:3724:100:3592:-247.277,0,-264.945	1/1:186:0,186:0:0:186:6660:-555.209,-55.9916,0	1/1:38:0,38:0:0:38:1364:-112.719,-11.4391,0	0/1:179:105,74:105:3756:74:2664:-174.598,0,-278.265	1/1:114:3,111:3:108:111:3980:-322.883,-24.746,0	1/1:100:3,97:3:108:97:3484:-286.07,-20.2954,0	0/1:5:1,4:1:36:4:144:-10.8756,0,-1.94934	1/1:13:0,13:0:0:13:468:-39.9458,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.11209,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	0/1:6:4,2:4:144:2:72:-4.36152,0,-10.5746	0/1:198:151,47:151:5409:47:1684:-84.7348,0,-416.249	0/1:125:62,63:62:2228:63:2259:-149.563,0,-154.601	0/1:56:37,19:37:1328:19:684:-39.4552,0,-94.6112	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.20846	0/1:94:50,44:50:1796:44:1584:-103.289,0,-126.439	0/1:27:22,5:22:779:5:176:-7.59241,0,-58.1683	0/1:111:59,52:59:2116:52:1872:-123.526,0,-147.428	0/1:79:42,37:42:1486:37:1324:-89.8172,0,-106.564	0/1:80:43,37:43:1548:37:1332:-89.6325,0,-110.741	1/1:61:0,61:0:0:61:2181:-189.182,-18.3628,0	1/1:77:0,77:0:0:77:2760:-222.25,-23.1793,0	0/1:103:44,59:44:1568:59:2108:-151.783,0,-106.477	1/1:63:0,63:0:0:63:2252:-192.926,-18.9649,0	1/1:132:1,130:1:36:130:4651:-396.792,-36.3259,0	1/1:77:0,77:0:0:77:2768:-239.654,-23.1793,0	0/1:5:2,3:2:68:3:104:-7.8703,0,-4.80175	0/1:86:61,25:61:2196:25:900:-47.3435,0,-156.193	1/1:40:0,40:0:0:40:1425:-122.715,-12.0412,0	0/1:11:2,9:2:72:9:324:-22.3531,0,-3.04635	0/1:75:35,40:35:1256:40:1436:-97.4466,0,-85.3138	0/1:43:14,29:14:500:29:1040:-74.47,0,-30.3587	0/1:6:4,2:4:144:2:72:-4.82054,0,-11.3464	1/1:11:0,11:0:0:11:396:-35.0989,-3.31133,0	1/1:67:0,67:0:0:67:2400:-201.461,-20.169,0	1/1:127:0,127:0:0:127:4546:-390.188,-38.2308,0	0/1:7:4,3:4:144:3:108:-7.56536,0,-10.2252	1/1:105:0,105:0:0:105:3776:-326.378,-31.6082,0	1/1:226:11,215:11:392:215:7670:-624.295,-33.9354,0	0/1:104:57,47:57:2044:47:1688:-111.211,0,-143.211	1/1:48:0,48:0:0:48:1720:-149.093,-14.4494,0	0/1:102:39,62:39:1400:62:2228:-160.628,0,-91.7614	0/1:115:64,51:64:2304:51:1820:-119.733,0,-164.122	0/1:36:29,7:29:1044:7:252:-10.2126,0,-77.706	1/1:83:0,83:0:0:83:2980:-241.467,-24.9855,0	0/1:93:63,30:63:2223:30:1071:-63.4612,0,-168.804	0/1:23:6,17:6:216:17:598:-44.7697,0,-12.3412	1/1:60:0,60:0:0:60:2156:-175.498,-18.0618,0	0/1:75:42,33:42:1500:33:1188:-74.3313,0,-102.327	1/1:240:1,239:1:36:239:8531:-710.973,-68.7927,0	1/1:140:0,140:0:0:140:4981:-427.169,-42.1442,0	0/1:50:30,20:30:1071:20:720:-42.0377,0,-74.3408	1/1:116:0,116:0:0:116:4148:-338.098,-34.9195,0	1/1:10:0,10:0:0:10:356:-30.1359,-3.0103,0	1/1:63:0,63:0:0:63:2240:-188.827,-18.9649,0	0/1:68:36,32:36:1296:32:1152:-73.3862,0,-87.6249	0/1:191:109,82:109:3883:82:2924:-190.013,0,-279.631	1/1:138:2,136:2:72:136:4871:-411.59,-35.0357,0	0/1:41:19,22:19:680:22:792:-56.439,0,-47.5054	0/1:127:75,52:75:2671:52:1864:-121.983,0,-195.632	0/1:165:75,90:75:2680:90:3220:-226.686,0,-183.425	1/1:15:0,15:0:0:15:540:-44.3559,-4.51545,0	1/1:41:0,41:0:0:41:1472:-120.897,-12.3422,0	1/1:49:0,49:0:0:49:1764:-141.808,-14.7505,0	0/1:56:25,31:25:900:31:1112:-75.6315,0,-60.7241	0/1:82:41,41:41:1464:41:1471:-98.1384,0,-101.731	0/1:84:50,34:50:1777:34:1212:-80.2847,0,-129.699	1/1:57:1,56:1:36:56:2001:-167.714,-13.656,0	1/1:126:0,126:0:0:126:4523:-388.541,-37.9298,0
chr07	21711873	.	GTCA	ATCA,ATCG	561478	PASS	AB=0.481295,0.515174;ABP=39.1604,26.8008;AC=136,52;AF=0.723404,0.276596;AN=188;AO=15029,6160;CIGAR=1X3M,1X2M1X;DP=21273;DPB=21280.5;DPRA=0,1.26573;EPP=32638.1,13379.3;EPPR=31.2394;GTI=0;LEN=1,4;MEANALT=2.38298,2.7619;MQM=59.9612,59.8247;MQMR=60;NS=94;NUMALT=2;ODDS=9.2758;PAIRED=0,0;PAIREDR=0;PAO=14.5,17.5;PQA=508,607;PQR=0;PRO=0;QA=532793,212462;QR=460;RO=13;RPL=9700,3889;RPP=2763.5,925.859;RPPR=3.17734;RPR=5329,2271;RUN=1,1;SAF=9700,3889;SAP=2763.5,925.859;SAR=5329,2271;SRF=7;SRP=3.17734;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:134:0,43,91:0:0:43,91:1531,3133:-379.593,-254.807,-241.863,-125.138,0,-97.7443	1/2:483:0,252,228:0:0:252,228:8901,7804:-1358.35,-633.475,-557.615,-724.941,0,-656.306	1/2:379:0,183,196:0:0:183,196:6536,6798:-1085.78,-552.897,-497.808,-533.237,0,-474.235	1/2:521:0,281,238:0:0:281,238:9978,8258:-1484.21,-671.182,-586.592,-812.95,0,-741.305	1/1:100:0,100,0:0:0:100,0:3538,0:-318.612,-30.103,0,-318.612,-30.103,-318.612	1/1:142:0,142,0:0:0:142,0:5014,0:-451.41,-42.7463,0,-451.41,-42.7463,-451.41	1/1:222:0,222,0:0:0:222,0:7904,0:-711.326,-66.8287,0,-711.326,-66.8287,-711.326	1/2:501:0,272,227:0:0:272,227:9642,7797:-1418.49,-632.976,-551.095,-785.486,0,-717.152	1/1:226:0,225,0:0:0:225,0:7966,0:-716.525,-67.7318,0,-716.525,-67.7318,-716.525	1/2:218:0,128,88:0:0:128,88:4580,3004:-617.258,-243.772,-205.24,-373.513,0,-347.022	1/1:168:0,168,0:0:0:168,0:5896,0:-530.702,-50.573,0,-530.702,-50.573,-530.702	1/1:194:0,194,0:0:0:194,0:6862,0:-617.656,-58.3998,0,-617.656,-58.3998,-617.656	1/2:140:0,71,69:0:0:71,69:2526,2419:-403.045,-197.181,-175.807,-206.218,0,-185.447	1/2:209:0,107,101:0:0:107,101:3743,3460:-585.357,-280.848,-248.638,-304.495,0,-274.091	1/2:141:0,81,60:0:0:81,60:2878,2048:-401.05,-166.524,-142.14,-234.873,0,-216.812	1/1:125:1,123,0:1:36:123,0:4311,0:-384.626,-34.0344,0,-384.927,-37.0267,-387.864	1/1:146:0,146,0:0:0:146,0:5148,0:-463.348,-43.9504,0,-463.348,-43.9504,-463.348	1/1:79:0,78,0:0:0:78,0:2766,0:-248.901,-23.4803,0,-248.901,-23.4803,-248.901	1/2:104:0,35,69:0:0:35,69:1230,2417:-297.086,-197.006,-186.47,-100.431,0,-79.6595	1/2:360:0,179,180:0:0:179,180:6341,6186:-1018.93,-502.38,-448.495,-516.613,0,-462.428	1/1:364:0,364,0:0:0:364,0:12887,0:-1159.66,-109.575,0,-1159.66,-109.575,-1159.66	1/2:181:0,45,136:0:0:45,136:1604,4647:-508.086,-377.335,-363.788,-130.986,0,-90.0461	1/1:182:0,180,1:0:0:180,1:6412,35:-576.815,-54.1854,0,-573.967,-51.3426,-573.666	1/2:169:0,89,79:0:0:89,79:3188,2662:-475.716,-215.711,-188.92,-260.021,0,-236.24	1/2:217:0,112,103:0:0:112,103:3999,3603:-619.009,-293.205,-259.489,-325.885,0,-294.879	1/2:649:0,316,332:0:0:316,332:11198,11480:-1845.04,-932.79,-837.665,-912.215,0,-812.273	1/1:478:2,475,0:2:72:475,0:16918,0:-1515.42,-137.155,0,-1516.02,-142.989,-1521.89	1/1:72:0,72,0:0:0:72,0:2568,0:-231.37,-21.6742,0,-231.37,-21.6742,-231.37	1/2:532:0,222,309:0:0:222,309:7885,10761:-1517.59,-875.087,-808.258,-642.537,0,-549.518	1/1:644:0,631,13:0:0:631,13:22315,451:-2007.25,-189.95,0,-1970.59,-153.11,-1966.67	1/1:326:0,323,3:0:0:323,3:11473,108:-1032.09,-97.2327,0,-1023.28,-88.0606,-1022.38	1/2:11:0,2,9:0:0:2,9:72,315:-31.8551,-25.9785,-25.3764,-6.23466,0,-3.52539	1/1:39:0,39,0:0:0:39,0:1369,0:-123.508,-11.7402,0,-123.508,-11.7402,-123.508	1/1:18:0,18,0:0:0:18,0:633,0:-57.2971,-5.41854,0,-57.2971,-5.41854,-57.2971	1/2:25:0,12,13:0:0:12,13:419,434:-69.554,-35.4654,-31.853,-34.4303,0,-30.5169	1/2:21:0,10,11:0:0:10,11:347,379:-59.3339,-31.1263,-28.116,-28.5533,0,-25.242	1/2:396:0,182,213:0:0:182,213:6440,7454:-1130.94,-606.387,-551.6,-524.546,0,-460.427	1/2:405:0,180,224:0:0:180,224:6322,7713:-1141.11,-626.558,-572.373,-514.696,0,-447.265	1/2:156:0,71,85:0:0:71,85:2463,2875:-433.604,-233.404,-212.031,-200.543,0,-174.955	1/2:3:0,1,2:0:0:1,2:36,66:-8.60852,-5.66104,-5.36001,-3.29724,0,-2.69518	1/2:403:0,220,182:0:0:220,182:7859,6349:-1157.01,-516.451,-450.224,-640.663,0,-585.876	1/2:79:0,43,36:0:0:43,36:1512,1231:-223.06,-100.25,-87.306,-123.155,0,-112.318	1/2:358:0,161,195:0:0:161,195:5721,6715:-1011.63,-545.437,-496.972,-466.282,0,-407.581	1/2:179:0,90,89:0:0:90,89:3181,3009:-503.245,-244.169,-217.076,-259.422,0,-232.63	1/2:131:0,60,70:0:0:60,70:2099,2387:-364.364,-193.595,-175.534,-170.696,0,-149.624	1/1:108:0,107,0:0:0:107,0:3772,0:-339.369,-32.2102,0,-339.369,-32.2102,-339.369	1/1:199:1,197,0:1:35:197,0:6987,0:-625.452,-56.4042,0,-625.753,-59.3029,-628.601	1/2:355:0,184,171:0:0:184,171:6541,5876:-1010.52,-477.487,-422.098,-533.385,0,-481.909	1/1:258:0,258,0:0:0:258,0:9165,0:-824.828,-77.6657,0,-824.828,-77.6657,-824.828	1/1:419:0,416,0:0:0:416,0:14841,0:-1335.12,-125.228,0,-1335.12,-125.228,-1335.12	1/1:258:0,257,0:0:0:257,0:9166,0:-824.566,-77.3647,0,-824.566,-77.3647,-824.566	1/2:49:0,13,36:0:0:13,36:468,1251:-140.242,-102.053,-98.1392,-38.5463,0,-27.7092	1/2:270:0,136,131:0:0:136,131:4857,4539:-764.869,-368.878,-327.937,-396.022,0,-356.587	1/1:149:2,145,1:2:66:145,1:5136,36:-456.127,-38.3009,0,-453.792,-40.6978,-458.826	1/2:11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chr07	21772734	.	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chr07	21784487	.	A	C	6673.1	PASS	AB=0.25836;ABP=1610.74;AC=44;AF=0.234043;AN=188;AO=840;CIGAR=1X;DP=9618;DPB=9618;DPRA=0.615381;EPP=1827.05;EPPR=19005.6;GTI=17;LEN=1;MEANALT=1.06122;MQM=44.6988;MQMR=38.6412;NS=94;NUMALT=1;ODDS=0.94541;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29314;QR=311929;RO=8771;RPL=840;RPP=1827.05;RPPR=19005.6;RPR=0;RUN=1;SAF=840;SAP=1827.05;SAR=0;SRF=8771;SRP=19049;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:23,27:23:816:27:946:-69.5457,0,-52.7139	0/0:143:143,0:143:5074:0:0:0,-43.0473,-406.831	0/0:81:75,6:75:2661:6:216:0,-4.81103,-197.57	0/0:319:319,0:319:11299:0:0:0,-96.0286,-969.936	0/0:84:84,0:84:3000:0:0:0,-25.2865,-250.98	0/0:75:75,0:75:2663:0:0:0,-22.5772,-215.683	0/1:98:75,23:75:2663:23:792:-41.1185,0,-196.661	0/0:180:180,0:180:6395:0:0:0,-54.1854,-520.047	0/1:67:35,32:35:1243:32:1132:-80.9588,0,-79.8329	0/0:98:98,0:98:3486:0:0:0,-29.5009,-295.638	0/0:75:75,0:75:2684:0:0:0,-22.5772,-230.346	0/1:71:45,26:45:1594:26:882:-57.2776,0,-108.739	0/1:56:40,16:40:1432:16:552:-32.7002,0,-98.8503	0/1:54:37,17:37:1311:17:576:-35.0242,0,-93.6844	0/0:72:71,0:71:2517:0:0:0,-21.3731,-213.655	0/0:59:59,0:59:2107:0:0:0,-17.7608,-177.821	0/0:84:84,0:84:2990:0:0:0,-25.2865,-242.915	0/0:66:66,0:66:2346:0:0:0,-19.868,-191.662	0/0:38:38,0:38:1356:0:0:0,-11.4391,-110.725	0/1:177:145,32:145:5153:32:1101:-44.104,0,-387.611	0/0:134:134,0:134:4740:0:0:0,-40.338,-393.55	0/1:75:53,22:53:1888:22:759:-45.057,0,-141.336	0/1:73:50,23:50:1783:23:824:-51.4996,0,-131.679	0/1:90:60,30:60:2135:30:1045:-66.1086,0,-152.533	0/0:65:65,0:65:2306:0:0:0,-19.5669,-194.815	0/0:396:396,0:396:14076:0:0:0,-119.208,-1221.72	0/1:199:136,63:136:4850:63:2225:-137.652,0,-342.19	0/1:30:27,3:27:964:3:108:-0.904943,0,-72.1274	0/1:203:162,41:162:5795:41:1418:-63.6795,0,-442.417	0/1:91:80,11:80:2863:11:392:-7.7553,0,-212.432	0/0:156:156,0:156:5572:0:0:0,-46.9607,-476.893	0/1:9:7,2:7:252:2:72:-4.03291,0,-18.7061	0/0:24:24,0:24:856:0:0:0,-7.22472,-71.9147	1/1:3:0,3:0:0:3:108:-9.96413,-0.90309,0	0/0:10:10,0:10:347:0:0:0,-3.0103,-27.9023	0/1:21:11,10:11:387:10:356:-25.3242,0,-25.5855	0/0:242:242,0:242:8627:0:0:0,-72.8493,-749.025	0/0:249:248,1:248:8775:1:36:0,-71.3582,-729.441	0/0:89:89,0:89:3161:0:0:0,-26.7917,-257.672	0/1:9:7,2:7:252:2:72:-4.03291,0,-18.7061	0/1:107:89,17:89:3167:17:596:-21.1214,0,-229.529	0/1:42:28,12:28:1004:12:423:-25.4861,0,-71.882	0/1:137:74,63:74:2626:63:2176:-151.761,0,-179.565	0/0:67:62,5:62:2198:5:168:0,-4.86632,-174.646	0/0:109:109,0:109:3837:0:0:0,-32.8123,-327.631	0/0:115:115,0:115:4058:0:0:0,-34.6184,-353.283	0/0:168:167,1:167:5921:1:36:0,-47.0062,-479.73	0/1:137:115,22:115:4092:22:754:-25.6341,0,-308.678	0/0:186:185,0:185:6583:0:0:0,-55.6905,-562.913	0/0:160:160,0:160:5715:0:0:0,-48.1648,-488.554	0/0:187:187,0:187:6641:0:0:0,-56.2926,-574.867	0/1:21:18,3:18:640:3:108:-3.61421,0,-48.6635	0/0:180:180,0:180:6412:0:0:0,-54.1854,-517.726	0/0:75:74,1:74:2634:1:36:0,-19.0411,-224.018	0/1:9:6,3:6:216:3:108:-7.25486,0,-15.1446	0/1:128:101,27:101:3582:27:956:-46.129,0,-261.647	0/0:61:61,0:61:2155:0:0:0,-18.3628,-185.093	0/1:11:4,7:4:140:7:252:-19.0012,0,-9.30696	0/1:23:20,3:20:707:3:108:-2.76741,0,-54.5142	0/0:88:88,0:88:3111:0:0:0,-26.4906,-259.8	0/1:104:79,25:79:2827:25:858:-44.7476,0,-209.905	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.7486	0/1:113:97,16:97:3447:16:551:-15.1772,0,-264.448	0/1:164:144,20:144:5084:20:716:-14.5246,0,-385.828	0/1:61:41,20:41:1472:20:712:-44.9937,0,-104.951	0/0:46:41,4:41:1452:4:144:0,-0.720034,-110.589	0/0:217:217,0:217:7695:0:0:0,-65.3235,-657.45	0/1:39:28,11:28:992:11:392:-23.4089,0,-73.0529	0/1:17:7,10:7:243:10:329:-24.5037,0,-15.6488	0/1:72:62,10:62:2191:10:356:-10.3781,0,-156.142	0/1:77:57,20:57:2022:20:681:-37.5465,0,-152.403	0/1:17:10,7:10:360:7:239:-16.4693,0,-25.332	0/0:177:177,0:177:6332:0:0:0,-53.2823,-514.852	0/0:82:82,0:82:2905:0:0:0,-24.6845,-236.201	0/0:198:198,0:198:7067:0:0:0,-59.6039,-591.387	0/0:261:261,0:261:9313:0:0:0,-78.5688,-796.686	0/1:76:63,13:63:2221:13:441:-16.7568,0,-161.722	0/0:106:106,0:106:3792:0:0:0,-31.9092,-307.771	0/0:7:7,0:7:252:0:0:0,-2.10721,-19.891	0/0:170:169,0:169:6036:0:0:0,-50.8741,-503.047	0/1:89:73,16:73:2612:16:564:-23.1124,0,-182.341	0/0:326:326,0:326:11575:0:0:0,-98.1358,-987.083	0/0:137:137,0:137:4851:0:0:0,-41.2411,-410.434	0/1:62:46,16:46:1644:16:559:-31.3443,0,-121.882	0/0:121:121,0:121:4319:0:0:0,-36.4246,-369.998	0/1:109:80,29:80:2855:29:996:-55.948,0,-210.236	0/1:41:34,7:34:1211:7:248:-10.0896,0,-86.9385	0/0:96:96,0:96:3424:0:0:0,-28.8989,-280.181	0/0:88:88,0:88:3147:0:0:0,-26.4906,-257.478	0/0:46:46,0:46:1620:0:0:0,-13.8474,-135.029	0/1:89:47,42:47:1684:42:1487:-105.097,0,-112.528	0/1:52:32,20:32:1144:20:708:-47.1129,0,-82.2001	0/0:100:100,0:100:3580:0:0:0,-30.103,-306.211	0/0:127:127,0:127:4522:0:0:0,-38.2308,-386.512
chr07	21797587	.	A	G	33325.1	PASS	AB=0.503551;ABP=3.44217;AC=52;AF=0.27957;AN=186;AO=1996;CIGAR=1X;DP=7300;DPB=7300;DPRA=1.02396;EPP=4337.27;EPPR=11509.6;GTI=1;LEN=1;MEANALT=1.05357;MQM=55.1869;MQMR=59.9694;NS=93;NUMALT=1;ODDS=0.357404;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71310;QR=189834;RO=5299;RPL=1996;RPP=4337.27;RPPR=11509.6;RPR=0;RUN=1;SAF=1996;SAP=4337.27;SAR=0;SRF=5299;SRP=11509.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:21,21:21:733:21:756:-55.6736,0,-53.6464	0/1:87:49,38:49:1760:38:1364:-96.6787,0,-132.494	0/1:58:25,32:25:896:32:1148:-85.7339,0,-63.4421	0/1:176:82,94:82:2940:94:3353:-248.205,0,-211.853	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/0:73:73,0:73:2609:0:0:0,-21.9752,-235.056	0/0:119:117,2:117:4204:2:72:0,-29.2092,-371.926	0/1:102:58,44:58:2080:44:1576:-110.86,0,-156.765	0/0:92:92,0:92:3289:0:0:0,-27.6948,-296.226	0/1:89:47,42:47:1684:42:1512:-109.381,0,-125.055	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:58:38,20:38:1364:20:720:-47.5066,0,-105.601	0/1:54:23,31:23:828:31:1112:-83.9606,0,-58.5885	0/1:41:23,18:23:820:18:640:-45.5467,0,-61.7803	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/1:11:7,4:7:252:4:144:-9.99269,0,-19.7176	0/1:156:79,77:79:2836:77:2738:-199.215,0,-208.515	0/0:153:153,0:153:5485:0:0:0,-46.0576,-493.774	0/1:123:50,73:50:1800:73:2592:-196.331,0,-125.256	0/0:109:107,2:107:3821:2:72:0,-26.0897,-337.363	0/1:98:59,38:59:2120:38:1334:-90.7121,0,-161.509	0/1:82:52,30:52:1872:30:1031:-68.2419,0,-144.072	0/1:396:202,194:202:7256:194:6902:-499.943,0,-533.881	0/0:146:146,0:146:5233:0:0:0,-43.9504,-471.105	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:185:72,113:72:2580:113:4038:-306.708,0,-176.759	0/0:102:99,3:99:3564:3:108:0,-20.6372,-310.898	0/0:122:122,0:122:4335:0:0:0,-36.7257,-390.323	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:5:4,1:4:144:1:36:-2.09053,0,-11.8085	0/1:6:4,2:4:144:2:72:-5.02561,0,-11.5074	0/1:137:64,73:64:2300:73:2620:-194.422,0,-166.02	0/1:214:105,109:105:3757:109:3901:-286.164,0,-273.908	0/1:30:13,17:13:468:17:612:-46.227,0,-33.4264	0/1:4:1,3:1:36:3:108:-8.86378,0,-2.39415	0/1:108:51,57:51:1836:57:2033:-150.305,0,-133.009	0/1:15:8,7:8:288:7:252:-18.4969,0,-21.752	0/1:115:64,51:64:2300:51:1832:-130.389,0,-172.638	0/1:51:26,25:26:936:25:900:-65.7798,0,-69.2069	0/1:37:15,22:15:540:22:788:-59.8307,0,-37.7984	0/0:107:106,1:106:3785:1:36:0,-28.6145,-337.252	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/1:110:58,52:58:2050:52:1857:-133.715,0,-151.655	0/0:116:116,0:116:4146:0:0:0,-34.9195,-373.32	0/0:113:113,0:113:4053:0:0:0,-34.0164,-364.955	0/0:140:140,0:140:5013:0:0:0,-42.1442,-451.155	0/1:11:9,2:9:324:2:72:-3.52046,0,-26.1945	0/1:71:45,26:45:1616:26:932:-62.7662,0,-124.334	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:9:3,6:3:108:6:216:-17.067,0,-7.3659	0/1:139:59,79:59:2105:79:2803:-210.271,0,-147.816	0/1:32:17,15:17:612:15:540:-39.2398,0,-45.7805	.:.:.:.:.:.:.:.	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:80:80,0:80:2823:0:0:0,-24.0824,-254.306	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	0/0:133:132,0:132:4748:0:0:0,-39.736,-427.116	0/0:134:134,0:134:4785:0:0:0,-40.338,-430.804	0/1:38:22,16:22:777:16:576:-40.4898,0,-58.8112	0/0:56:55,1:55:1976:1:36:0,-13.262,-174.519	0/1:188:109,79:109:3924:79:2841:-198.768,0,-296.757	0/1:49:14,35:14:504:35:1260:-98.7578,0,-30.9191	0/1:10:1,9:1:36:9:324:-26.0511,0,-0.587975	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:72:20,52:20:693:52:1872:-146.551,0,-41.0154	0/1:10:7,3:7:252:3:108:-7.0576,0,-20.0187	0/0:115:114,0:114:4092:0:0:0,-34.3174,-368.102	0/1:60:32,28:32:1152:28:990:-71.2232,0,-85.9283	0/0:225:225,0:225:8042:0:0:0,-67.7317,-723.795	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.245	0/1:134:75,59:75:2685:59:2101:-148.353,0,-201.555	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:76:32,44:32:1148:44:1572:-118.019,0,-80.7516	0/1:107:59,48:59:2078:48:1716:-122.185,0,-155.077	0/0:95:95,0:95:3416:0:0:0,-28.5978,-306.876	0/1:27:10,17:10:360:17:612:-47.2342,0,-24.6165	0/1:64:29,35:29:1044:35:1260:-93.7305,0,-75.0089	0/1:119:55,64:55:1965:64:2304:-171.516,0,-141.301	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.871	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:25:13,12:13:468:12:428:-31.3062,0,-34.9339	0/1:62:29,33:29:1040:33:1184:-88.1218,0,-75.2505	0/1:45:11,34:11:396:34:1196:-94.3086,0,-22.4364	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.249	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.79
chr07	21797593	.	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chr07	21835870	.	A	G	93142.7	PASS	AB=0.53506;ABP=50.8215;AC=135;AF=0.725806;AN=186;AO=6036;CIGAR=1X;DP=8120;DPB=8120;DPRA=0;EPP=10665.1;EPPR=3470.82;GTI=1;LEN=1;MEANALT=1.02151;MQM=29.3449;MQMR=29.604;NS=93;NUMALT=1;ODDS=0.1907;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214766;QR=73255;RO=2081;RPL=5740;RPP=10665.1;RPPR=3470.82;RPR=296;RUN=1;SAF=0;SAP=13110;SAR=6036;SRF=0;SRP=4521.84;SRR=2081;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:14,12:14:492:12:432:-22.4446,0,-27.7361	0/1:171:64,107:64:2211:107:3806:-219.212,0,-106.456	0/1:146:75,71:75:2648:71:2552:-134.267,0,-146.14	0/1:170:69,101:69:2431:101:3601:-202.132,0,-122.254	1/1:60:0,60:0:0:60:2131:-153.673,-18.0618,0	1/1:76:0,76:0:0:76:2706:-189.989,-22.8783,0	1/1:87:0,87:0:0:87:3090:-220.437,-26.1896,0	0/1:144:52,92:52:1814:92:3286:-190.307,0,-88.372	1/1:56:0,56:0:0:56:1982:-139.666,-16.8577,0	0/1:76:29,47:29:1020:47:1680:-96.74,0,-49.9219	1/1:69:0,69:0:0:69:2468:-173.161,-20.7711,0	1/1:63:0,63:0:0:63:2239:-158.939,-18.9649,0	0/1:47:22,25:22:763:25:896:-48.2279,0,-40.9375	0/1:95:43,52:43:1521:52:1843:-102.447,0,-80.3755	0/1:55:26,29:26:920:29:1023:-56.0138,0,-48.4485	1/1:48:0,48:0:0:48:1703:-118.035,-14.4494,0	1/1:90:0,90:0:0:90:3227:-228.219,-27.0927,0	1/1:53:0,53:0:0:53:1908:-133.351,-15.9546,0	0/1:49:22,27:22:784:27:972:-53.1976,0,-40.6198	0/1:193:88,105:88:3120:105:3726:-204.038,0,-162.171	1/1:119:0,119:0:0:119:4244:-302.339,-35.8226,0	0/1:132:88,44:88:3135:44:1551:-69.709,0,-180.709	1/1:27:0,27:0:0:27:968:-69.2929,-8.12781,0	0/1:61:18,43:18:628:43:1518:-91.8457,0,-29.0183	0/1:50:28,22:28:992:22:761:-39.0003,0,-55.94	0/1:207:101,106:101:3575:106:3795:-204.502,0,-189.179	1/1:172:0,172:0:0:172:6139:-435.412,-51.7772,0	1/1:25:0,25:0:0:25:900:-63.9008,-7.52575,0	0/1:295:147,146:147:5174:146:5182:-275.867,0,-279.627	1/1:126:0,126:0:0:126:4497:-318.811,-37.9298,0	1/1:88:0,88:0:0:88:3112:-218.838,-26.4906,0	0/1:3:2,1:2:72:1:36:-1.91799,0,-4.45696	1/1:12:0,12:0:0:12:432:-31.036,-3.61236,0	1/1:7:0,7:0:0:7:252:-17.815,-2.10721,0	0/1:8:2,6:2:72:6:208:-12.8351,0,-2.95181	0/1:4:2,2:2:68:2:72:-4.15593,0,-4.06347	0/1:143:55,88:55:1948:88:3121:-172.971,0,-94.6769	0/1:210:104,106:104:3623:106:3765:-209.033,0,-200.277	0/1:83:32,51:32:1140:51:1804:-102.08,0,-56.2692	.:.:.:.:.:.:.:.	0/1:142:53,89:53:1871:89:3167:-186.749,0,-92.9017	0/1:36:16,20:16:555:20:708:-37.5346,0,-29.0893	0/1:109:49,60:49:1719:60:2135:-119.653,0,-91.3549	0/1:32:14,18:14:488:18:644:-35.6848,0,-24.3713	0/1:37:14,23:14:496:23:824:-46.2773,0,-23.9343	1/1:40:0,40:0:0:40:1424:-97.5268,-12.0412,0	1/1:67:0,67:0:0:67:2396:-168.805,-20.169,0	0/1:108:61,47:61:2140:47:1669:-85.6119,0,-118.312	1/1:83:0,83:0:0:83:2963:-210.363,-24.9855,0	1/1:225:0,225:0:0:225:8011:-567.778,-67.7318,0	1/1:144:0,144:0:0:144:5119:-357.78,-43.3483,0	0/1:5:3,2:3:108:2:72:-3.8549,0,-6.23289	0/1:164:67,96:67:2373:96:3420:-194.35,0,-117.643	1/1:70:0,70:0:0:70:2463:-171.134,-21.0721,0	0/1:14:7,7:7:244:7:244:-13.1533,0,-13.6625	0/1:80:40,40:40:1409:40:1432:-79.9305,0,-77.3983	0/1:26:9,17:9:312:17:608:-35.8975,0,-15.159	0/1:7:3,4:3:108:4:144:-8.01674,0,-5.70961	1/1:24:0,24:0:0:24:852:-57.658,-7.22472,0	1/1:137:0,137:0:0:137:4891:-349.974,-41.2411,0	1/1:141:0,141:0:0:141:5035:-357.327,-42.4452,0	0/1:7:3,4:3:104:4:144:-8.17125,0,-5.70097	1/1:143:0,143:0:0:143:5085:-346.879,-43.0473,0	1/1:189:0,189:0:0:189:6677:-472.304,-56.8947,0	0/1:71:32,39:32:1140:39:1377:-79.7831,0,-58.0379	1/1:69:0,69:0:0:69:2453:-168.605,-20.7711,0	0/1:63:36,27:36:1260:27:960:-47.9351,0,-68.407	0/1:140:72,68:72:2527:68:2422:-129.141,0,-138.47	0/1:30:16,14:16:547:14:498:-27.0728,0,-32.7234	1/1:84:0,84:0:0:84:2971:-210.982,-25.2865,0	0/1:75:46,29:46:1636:29:1040:-49.421,0,-92.0542	0/1:16:4,12:4:140:12:428:-23.2784,0,-5.53149	1/1:97:0,97:0:0:97:3446:-243.678,-29.1999,0	0/1:35:16,19:16:568:19:672:-37.7222,0,-29.2104	1/1:140:0,140:0:0:140:5007:-354.462,-42.1442,0	1/1:174:0,174:0:0:174:6184:-438.898,-52.3792,0	0/1:156:77,79:77:2686:79:2801:-151.682,0,-144.017	1/1:148:2,146:2:72:146:5162:-358.892,-39.1924,0	1/1:13:0,13:0:0:13:468:-31.7254,-3.91339,0	1/1:101:0,101:0:0:101:3580:-255.397,-30.404,0	0/1:136:59,77:59:2089:77:2744:-147.07,0,-105.868	0/1:149:55,94:55:1944:94:3337:-189.996,0,-92.6366	1/1:89:0,89:0:0:89:3187:-223.013,-26.7917,0	0/1:60:20,40:20:716:40:1431:-79.7263,0,-32.9117	0/1:43:21,22:21:740:22:788:-43.2608,0,-39.1545	0/1:93:54,39:54:1891:39:1383:-69.8375,0,-105.409	1/1:38:0,38:0:0:38:1351:-94.9636,-11.4391,0	1/1:53:0,53:0:0:53:1858:-132.502,-15.9546,0	1/1:64:0,64:0:0:64:2279:-162.146,-19.2659,0	0/1:74:34,40:34:1196:40:1414:-77.9794,0,-64.8104	0/1:148:79,69:79:2769:69:2453:-129.665,0,-154.956	0/1:54:36,18:36:1256:18:640:-30.1086,0,-74.5058	1/1:75:0,75:0:0:75:2692:-188.959,-22.5773,0	1/1:56:0,56:0:0:56:1985:-140.523,-16.8577,0
chr07	21836014	.	C	T	6069.84	PASS	AB=0.549495;ABP=114.57;AC=52;AF=0.27957;AN=186;AO=2897;CIGAR=1X;DP=9221;DPB=9221;DPRA=1.29956;EPP=6293.77;EPPR=13437.3;GTI=38;LEN=1;MEANALT=1.03448;MQM=15.9986;MQMR=59.9184;NS=93;NUMALT=1;ODDS=0.191984;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103672;QR=225830;RO=6322;RPL=2897;RPP=6293.77;RPPR=13437.3;RPR=0;RUN=1;SAF=0;SAP=6293.77;SAR=2897;SRF=0;SRP=13731.1;SRR=6322;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:17,14:17:612:14:504:-27.4315,0,-46.0815	0/1:177:88,89:88:3143:89:3156:-177.911,0,-229.813	0/1:128:66,62:66:2364:62:2216:-123.555,0,-174.487	0/1:364:136,228:136:4851:228:8156:-151.281,0,-327.17	0/0:55:54,1:54:1936:1:36:0,-15.1593,-173.119	0/0:49:49,0:49:1729:0:0:0,-14.7505,-155.893	0/0:133:133,0:133:4759:0:0:0,-40.037,-428.198	0/1:118:50,68:50:1800:68:2412:-140.769,0,-126.761	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.35	0/1:124:53,71:53:1884:71:2544:-40.8087,0,-132.511	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.269	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:55:25,30:25:892:30:1080:-62.4662,0,-64.043	0/1:59:23,36:23:820:36:1287:-23.7728,0,-56.3617	0/1:48:21,27:21:756:27:968:-16.5994,0,-53.9178	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.533	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:42:42,0:42:1469:0:0:0,-12.6433,-132.501	0/1:40:12,28:12:432:28:1004:-61.1807,0,-27.1514	0/1:247:116,131:116:4139:131:4690:-81.3884,0,-298.34	0/0:149:149,0:149:5328:0:0:0,-44.8535,-479.654	0/1:190:52,138:52:1864:138:4961:-83.5026,0,-110.844	0/0:89:88,1:88:3148:1:36:0,-25.5933,-282.347	0/1:121:64,57:64:2275:57:2029:-28.0198,0,-168.587	0/1:62:30,32:30:1072:32:1140:-18.7602,0,-78.1286	0/1:351:173,176:173:6169:176:6312:-78.4989,0,-449.95	0/0:237:236,1:236:8455:1:36:0,-68.0979,-757.704	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:329:163,166:163:5824:166:5936:-81.7869,0,-424.966	0/0:143:140,3:140:5004:3:108:0,-39.6918,-447.153	0/0:132:131,1:131:4658:1:36:0,-38.6372,-418.285	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	1/1:2:0,2:0:0:2:72:-5.51525,-0.60206,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:157:71,86:71:2540:86:3088:-41.4975,0,-181.589	0/1:200:94,106:94:3372:106:3788:-64.2737,0,-243.22	0/1:39:15,24:15:540:24:856:-50.8548,0,-37.1964	1/1:4:0,4:0:0:4:144:-4.43402,-1.20412,0	0/1:221:105,116:105:3742:116:4160:-67.7817,0,-270.397	0/1:29:9,20:9:324:20:720:-16.4044,0,-20.7582	0/1:157:68,89:68:2421:89:3199:-49.7829,0,-170.883	0/1:77:40,37:40:1436:37:1332:-18.1154,0,-106.358	0/1:58:30,28:30:1076:28:996:-13.7931,0,-79.6931	0/0:83:83,0:83:2959:0:0:0,-24.9855,-266.544	0/0:135:135,0:135:4836:0:0:0,-40.639,-435.394	0/1:138:61,77:61:2180:77:2752:-44.5074,0,-154.924	0/0:133:133,0:133:4752:0:0:0,-40.037,-427.839	0/0:190:190,0:190:6773:0:0:0,-57.1957,-609.645	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.886	0/1:7:3,4:3:108:4:144:-2.32681,0,-7.96796	0/1:126:52,74:52:1864:74:2656:-155.128,0,-130.11	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:6:1,5:1:36:5:180:-11.5465,0,-1.79209	0/1:128:60,68:60:2139:68:2421:-39.2992,0,-154.246	0/1:76:38,38:38:1364:38:1368:-17.9564,0,-100.18	0/1:6:2,4:2:72:4:144:-2.35132,0,-5.03054	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:3:1,2:1:36:2:72:-1.37384,0,-2.69518	0/0:266:266,0:266:9486:0:0:0,-80.074,-853.431	0/0:182:181,1:181:6469:1:36:0,-53.5891,-581.086	0/1:33:19,14:19:676:14:500:-7.89541,0,-51.234	0/0:116:116,0:116:4159:0:0:0,-34.9195,-374.491	0/1:192:81,111:81:2892:111:3969:-64.0843,0,-201.553	0/1:150:48,102:48:1712:102:3635:-70.8355,0,-109.211	0/1:20:11,9:11:380:9:320:-6.90969,0,-28.5114	0/0:74:74,0:74:2628:0:0:0,-22.2762,-236.768	0/1:57:27,30:27:972:30:1060:-13.7865,0,-70.6392	0/1:11:4,7:4:144:7:252:-4.17611,0,-10.0023	0/0:90:89,1:89:3164:1:36:0,-24.1899,-282.084	0/1:46:21,25:21:756:25:896:-51.6511,0,-54.5198	0/0:163:163,0:163:5823:0:0:0,-49.0679,-524.184	0/0:183:183,0:183:6540:0:0:0,-55.0885,-588.684	0/1:109:61,48:61:2183:48:1714:-91.667,0,-163.923	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.013	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:120:119,1:119:4256:1:36:0,-34.9252,-382.021	0/1:167:77,90:77:2756:90:3232:-183.502,0,-197.953	0/1:199:102,97:102:3640:97:3472:-57.9899,0,-267.631	0/0:72:72,0:72:2558:0:0:0,-21.6742,-230.469	0/1:53:32,21:32:1131:21:756:-8.71527,0,-86.1398	0/1:68:30,38:30:1067:38:1360:-20.4507,0,-75.8708	0/1:124:51,73:51:1820:73:2611:-43.0475,0,-126.262	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/0:66:66,0:66:2347:0:0:0,-19.868,-211.461	0/1:29:14,15:14:504:15:540:-9.11345,0,-36.9682	0/1:49:21,28:21:752:28:1004:-17.0164,0,-53.2558	0/1:64:22,42:22:770:42:1504:-27.2931,0,-50.3534	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.088	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.212
chr07	21905694	.	CTCCA	ATCCG,ATCCA	276732	PASS	AB=0.503013,0.491128;ABP=3.48138,7.09444;AC=135,53;AF=0.718085,0.281915;AN=188;AO=7458,2950;CIGAR=1X3M1X,1X4M;DP=10475;DPB=10668;DPRA=0,1.02962;EPP=15990.1,6348.2;EPPR=5.18177;GTI=0;LEN=5,1;MEANALT=2.32979,2.60938;MQM=59.735,59.9566;MQMR=60;NS=94;NUMALT=2;ODDS=2.24904;PAIRED=0,0;PAIREDR=0;PAO=482.5,482.5;PQA=16803.5,16803.5;PQR=0;PRO=0;QA=259494,104740;QR=35;RO=1;RPL=3110,1346;RPP=449.255,52.0076;RPPR=5.18177;RPR=4348,1604;RUN=1,1;SAF=3134,1353;SAP=415.322,46.8343;SAR=4324,1597;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:71:0,41,30:0:0:41,30:1430,1076:-204.402,-88.122,-75.7797,-116.634,0,-107.603	1/2:176:0,103,73:0:0:103,73:3575,2584:-501.407,-210.833,-179.827,-290.925,0,-268.95	1/2:142:0,74,68:0:0:74,68:2599,2440:-410.629,-199.274,-176.998,-211.71,0,-191.24	1/2:193:0,105,87:0:0:105,87:3637,3102:-548.022,-252.685,-221.077,-295.427,0,-269.237	1/1:103:0,100,0:0:0:100,0:3493,0:-314.208,-30.103,0,-314.208,-30.103,-314.208	1/1:57:0,55,0:0:0:55,0:1918,0:-172.61,-16.5567,0,-172.61,-16.5567,-172.61	1/1:174:0,173,0:0:0:173,0:6039,0:-543.269,-52.0782,0,-543.269,-52.0782,-543.269	1/2:105:0,60,44:0:0:60,44:2067,1572:-296.036,-128.167,-110.105,-167.862,0,-154.616	1/1:141:0,140,0:0:0:140,0:4825,0:-434.104,-42.1442,0,-434.104,-42.1442,-434.104	1/2:66:0,35,30:0:0:35,30:1242,1072:-188.564,-87.3723,-76.8362,-101.159,0,-92.1284	1/1:128:0,126,0:0:0:126,0:4420,0:-396.352,-37.9298,0,-396.352,-37.9298,-396.352	1/1:136:0,136,0:0:0:136,0:4687,0:-420.697,-40.9401,0,-420.697,-40.9401,-420.697	1/2:128:0,55,72:0:0:55,72:1906,2531:-360.043,-205.224,-188.668,-154.033,0,-132.359	1/2:148:0,67,79:0:0:67,79:2298,2824:-416.595,-230.033,-209.864,-186.331,0,-162.549	1/2:114:0,48,64:0:0:48,64:1658,2286:-320.848,-186.146,-171.697,-134.469,0,-115.204	1/1:113:0,111,1:0:0:111,1:3832,32:-344.446,-33.4143,0,-341.867,-31.1568,-341.566	1/1:129:0,128,0:0:0:128,0:4425,0:-396.771,-38.5318,0,-396.771,-38.5318,-396.771	1/1:91:0,91,0:0:0:91,0:3176,0:-285.156,-27.3937,0,-285.156,-27.3937,-285.156	1/2:101:0,47,54:0:0:47,54:1647,1908:-289.51,-155.503,-141.355,-134.125,0,-117.869	1/2:156:0,89,67:0:0:89,67:3110,2393:-448.429,-195.45,-168.658,-253.333,0,-233.164	1/1:205:0,205,0:0:0:205,0:7113,0:-640.232,-61.7112,0,-640.232,-61.7112,-640.232	1/2:36:0,5,31:0:0:5,31:157,1101:-102.681,-90.0664,-88.5613,-12.9338,0,-3.6019	1/1:97:0,97,0:0:0:97,0:3354,0:-302.075,-29.1999,0,-302.075,-29.1999,-302.075	1/2:167:0,101,66:0:0:101,66:3573,2334:-481.429,-190.449,-160.045,-291.334,0,-271.466	1/2:100:0,47,53:0:0:47,53:1612,1881:-284.465,-153.612,-139.464,-131.201,0,-115.246	1/2:223:0,105,118:0:0:105,118:3664,4183:-639.069,-341.13,-309.522,-298.291,0,-262.769	1/1:235:0,233,0:0:0:233,0:8148,0:-733.019,-70.14,0,-733.019,-70.14,-733.019	1/1:56:0,55,1:0:0:55,1:1916,36:-170.867,-16.5567,0,-167.93,-13.2594,-167.629	1/2:181:0,86,95:0:0:86,95:2987,3393:-519.806,-276.985,-251.096,-243.173,0,-214.575	1/1:99:0,96,3:0:0:96,3:3316,93:-298.349,-28.8989,0,-290.886,-21.1252,-289.983	1/1:125:0,123,1:0:0:123,1:4335,36:-389.869,-37.0267,0,-386.931,-34.1446,-386.63	1/2:14:0,10,4:0:0:10,4:358,140:-40.8805,-11.6953,-8.68502,-29.4938,0,-28.2897	1/1:31:0,31,0:0:0:31,0:1084,0:-97.8555,-9.33193,0,-97.8555,-9.33193,-97.8555	1/1:5:0,5,0:0:0:5,0:178,0:-16.3687,-1.50515,0,-16.3687,-1.50515,-16.3687	1/1:13:0,12,1:0:0:12,1:421,36:-37.8575,-3.61236,0,-34.9193,-0.315115,-34.6183	1/2:19:0,16,3:0:0:16,3:559,89:-52.9182,-7.40127,-2.58479,-45.8218,0,-44.9188	1/2:313:1,149,162:1:35:149,162:5186,5760:-886.349,-464.977,-422.971,-417.263,0,-371.344	1/2:91:0,54,37:0:0:54,37:1868,1328:-260.403,-108.626,-92.3699,-152.073,0,-140.934	1/2:178:0,81,96:0:0:81,96:2834,3380:-505.005,-274.465,-250.081,-229.842,0,-200.943	1/2:8:0,2,6:0:0:2,6:72,216:-23.8592,-17.9843,-17.3823,-6.23466,0,-4.42848	1/2:108:0,69,37:0:0:69,37:2420,1320:-304.523,-107.604,-86.8331,-196.914,0,-185.776	1/2:78:0,38,39:0:0:38,39:1345,1369:-220.338,-110.787,-99.3475,-108.932,0,-97.1923	1/2:150:0,90,59:0:0:90,59:3171,2108:-430.035,-171.869,-144.776,-258.162,0,-240.401	1/2:122:0,60,61:0:0:60,61:2098,2158:-344.953,-174.313,-156.251,-169.195,0,-150.833	1/2:96:0,47,48:0:0:47,48:1625,1703:-269.88,-137.851,-123.703,-131.134,0,-116.684	1/1:53:0,53,0:0:0:53,0:1832,0:-165.158,-15.9546,0,-165.158,-15.9546,-165.158	1/1:112:0,108,1:0:0:108,1:3751,36:-337.411,-32.5112,0,-334.473,-29.568,-334.172	1/2:82:0,43,37:0:0:43,37:1517,1309:-230.147,-106.621,-93.6767,-123.528,0,-112.39	1/1:61:0,60,0:0:0:60,0:2077,0:-186.76,-18.0618,0,-186.76,-18.0618,-186.76	1/1:123:0,122,1:0:0:122,1:4268,36:-383.314,-36.7257,0,-380.377,-33.4284,-380.076	1/2:128:0,67,60:0:0:67,60:2317,2133:-362.21,-173.943,-153.774,-188.385,0,-170.324	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/2:177:0,99,78:0:0:99,78:3446,2770:-506.247,-226.059,-196.257,-280.54,0,-257.06	1/1:34:0,34,0:0:0:34,0:1195,0:-107.854,-10.235,0,-107.854,-10.235,-107.854	1/2:17:0,9,8:0:0:9,8:300,288:-48.1247,-23.8592,-21.1499,-24.6128,0,-22.2046	1/2:142:0,74,68:0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chr07	21916364	.	A	G	155603	PASS	AB=0.501839;ABP=3.54533;AC=54;AF=0.287234;AN=188;AO=9176;CIGAR=1X;DP=27845;DPB=27845;DPRA=3.08248;EPP=19919.8;EPPR=40514;GTI=2;LEN=1;MEANALT=1.07042;MQM=59.9827;MQMR=59.9923;NS=94;NUMALT=1;ODDS=3.22443;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=328003;QR=667456;RO=18664;RPL=9176;RPP=19928.4;RPPR=40531.4;RPR=0;RUN=1;SAF=1;SAP=19919.8;SAR=9175;SRF=2;SRP=40514;SRR=18662;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:33,23:33:1184:23:828:-57.9864,0,-90.0106	0/1:263:116,147:116:4118:147:5267:-394.994,0,-291.633	0/1:264:112,152:112:4009:152:5418:-408.277,0,-281.525	0/1:232:123,109:123:4390:109:3893:-280.724,0,-325.432	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.314	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:157:156,1:156:5592:1:36:0,-43.6634,-499.803	0/1:149:109,40:109:3886:40:1422:-83.4217,0,-305.079	0/0:248:248,0:248:8846:0:0:0,-74.6554,-796.126	0/1:83:43,40:43:1544:40:1436:-104.552,0,-114.268	0/0:464:463,1:463:16632:1:36:0,-136.08,-1492.93	0/0:68:68,0:68:2420:0:0:0,-20.47,-218.054	0/1:77:44,33:44:1565:33:1184:-83.689,0,-117.96	0/1:97:48,49:48:1716:49:1744:-128.044,0,-125.526	0/1:53:25,28:25:900:28:1008:-75.0818,0,-65.3664	0/0:68:67,1:67:2397:1:36:0,-16.8718,-212.387	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/1:262:150,112:150:5388:112:3994:-280.779,0,-406.179	0/1:262:130,132:130:4659:132:4736:-347.528,0,-340.601	0/0:284:284,0:284:10180:0:0:0,-85.4925,-915.938	0/1:131:54,77:54:1940:77:2751:-208.396,0,-135.441	0/0:132:132,0:132:4698:0:0:0,-39.736,-422.979	0/1:120:85,35:85:3044:35:1241:-75.8705,0,-238.066	0/1:110:57,53:57:2044:53:1900:-138.165,0,-151.118	0/1:351:173,178:173:6193:178:6353:-466.2,0,-451.804	0/0:308:308,0:308:11019:0:0:0,-92.7172,-991.6	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:388:179,209:179:6397:209:7483:-556.711,0,-459.019	0/0:182:176,6:176:6306:6:212:0,-35.3627,-548.203	0/0:189:188,1:188:6732:1:36:0,-53.2964,-602.356	0/1:1021:505,516:505:18083:516:18393:-1347.55,0,-1319.71	0/0:1109:1105,4:1105:39541:4:144:0,-320.529,-3544.06	0/0:910:909,1:909:32524:1:36:0,-270.339,-2922.53	0/1:1472:784,687:784:27981:687:24553:-1766.07,0,-2074.44	0/1:1125:638,487:638:22730:487:17371:-1224.36,0,-1706.44	0/1:198:83,115:83:2984:115:4112:-310.661,0,-209.187	0/1:228:102,126:102:3648:126:4489:-335.545,0,-259.89	0/1:560:285,274:285:10224:274:9815:-714.779,0,-751.598	0/1:361:191,169:191:6822:169:6048:-435.769,0,-505.418	0/1:133:76,57:76:2717:57:2048:-144.555,0,-204.735	0/1:254:117,137:117:4200:137:4928:-367.206,0,-301.718	0/1:286:140,146:140:4986:146:5222:-384.022,0,-362.791	0/1:74:33,41:33:1188:41:1457:-109.149,0,-84.9524	0/1:65:33,32:33:1180:32:1148:-84.0629,0,-86.9411	0/0:150:149,1:149:5348:1:36:0,-41.5562,-477.853	0/0:230:228,2:228:8165:2:72:0,-62.4002,-728.025	0/1:243:105,138:105:3737:138:4918:-369.619,0,-263.38	0/0:169:167,2:167:5984:2:72:0,-44.0373,-531.829	0/0:263:262,1:262:9386:1:36:0,-75.5726,-841.1	0/1:206:113,93:113:4056:93:3314:-236.464,0,-303.214	0/1:1255:539,716:539:19252:716:25607:-1926.11,0,-1354.43	0/1:229:118,111:118:4225:111:3976:-289.094,0,-311.492	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:941:467,474:467:16684:474:16970:-1243.67,0,-1217.94	0/1:197:87,110:87:3109:110:3944:-295.848,0,-220.733	0/1:94:37,57:37:1328:57:2048:-156.295,0,-91.5254	0/1:927:433,494:433:15436:494:17593:-1303.91,0,-1109.87	0/0:1072:1069,3:1069:38082:3:108:0,-312.629,-3416.06	0/0:101:101,0:101:3594:0:0:0,-30.404,-323.665	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/1:798:419,379:419:14968:379:13581:-981.825,0,-1106.62	0/0:56:56,0:56:1997:0:0:0,-16.8577,-180.002	0/0:195:193,2:193:6898:2:72:0,-51.8641,-614.049	0/1:88:48,40:48:1709:40:1424:-101.967,0,-127.603	0/0:140:139,1:139:4984:1:36:0,-38.5459,-445.109	0/1:251:118,133:118:4206:133:4746:-351.736,0,-303.16	0/1:191:63,128:63:2260:128:4562:-353.25,0,-146.166	0/1:441:196,245:196:7021:245:8775:-656.98,0,-499.196	0/0:88:87,1:87:3105:1:36:0,-22.8924,-276.078	0/1:69:30,38:30:1072:38:1368:-102.591,0,-75.9627	0/1:1005:515,490:515:18383:490:17495:-1271.63,0,-1351.51	0/0:125:125,0:125:4423:0:0:0,-37.6287,-398.231	0/1:99:47,52:47:1676:52:1857:-137.607,0,-121.325	0/0:245:245,0:245:8785:0:0:0,-73.7523,-790.505	0/0:238:238,0:238:8529:0:0:0,-71.6451,-767.606	0/1:85:46,39:46:1644:39:1392:-99.9915,0,-122.661	0/0:125:123,2:123:4405:2:72:0,-30.792,-389.784	0/0:1467:1463,3:1463:52383:3:108:0,-431.595,-4702.53	0/0:138:138,0:138:4911:0:0:0,-41.5421,-442.139	0/1:151:68,83:68:2429:83:2980:-222.976,0,-173.408	0/1:344:177,167:177:6330:167:5976:-434.392,0,-466.234	0/1:125:65,60:65:2336:60:2147:-155.868,0,-172.87	0/1:61:32,29:32:1144:29:1040:-75.5515,0,-84.9067	0/1:61:29,32:29:1031:32:1148:-85.267,0,-74.7374	0/1:152:67,85:67:2378:85:3029:-227.085,0,-168.518	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:571:305,266:305:10943:266:9519:-684.779,0,-812.875	0/1:901:465,436:465:16692:436:15592:-1131.75,0,-1230.7	0/1:59:15,44:15:536:44:1576:-124.371,0,-30.814	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03
chr07	21987847	.	ATTTT	GTTTT,GTTTC	196139	PASS	AB=0.558112,0.436557;ABP=228.637,271.925;AC=96,92;AF=0.510638,0.489362;AN=188;AO=4316,3360;CIGAR=1X4M,1X3M1X;DP=7717;DPB=7717.4;DPRA=0,82.9677;EPP=55.826,37.7952;EPPR=5.18177;GTI=6;LEN=1,5;MEANALT=2.38298,2.39785;MQM=59.7234,57.0509;MQMR=60;NS=94;NUMALT=2;ODDS=0.980206;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=0;PRO=0;QA=154116,117097;QR=36;RO=1;RPL=4316,3360;RPP=9375.09,7299.16;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=1996,1564;SAP=55.826,37.7952;SAR=2320,1796;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,15,9:0:0:15,9:532,318:-69.3844,-26.0497,-21.5343,-43.6353,0,-40.926	1/2:26:0,18,8:0:0:18,8:646,281:-75.6787,-22.9785,-17.56,-53.0513,0,-50.6431	1/2:74:0,47,26:0:0:47,26:1688,885:-209.165,-71.4566,-57.3082,-137.737,0,-129.91	1/2:84:0,61,23:0:0:61,23:2184,806:-243.267,-65.1539,-46.7911,-178.463,0,-171.539	1/2:22:0,10,12:0:0:10,12:360,412:-63.1124,-33.7313,-30.721,-29.7331,0,-26.1207	1/2:25:0,12,13:0:0:12,13:432,458:-72.8664,-37.6136,-34.0013,-35.6088,0,-31.6954	1/2:38:0,24,14:0:0:24,14:851,480:-108.604,-39.2664,-32.0416,-69.6847,0,-65.4703	1/2:78:0,48,27:0:0:48,27:1709,944:-215.772,-76.7639,-62.3145,-139.032,0,-130.904	1/2:68:0,16,52:0:0:16,52:576,1782:-190.62,-143.619,-138.802,-47.3562,0,-31.7026	1/2:57:0,36,21:0:0:36,21:1273,721:-162.563,-58.8793,-48.0422,-104.031,0,-97.7089	1/2:142:0,45,95:0:0:45,95:1612,3298:-399.297,-267.901,-254.354,-131.451,0,-102.853	1/2:326:0,142,181:0:0:142,181:5052,6307:-923.209,-511.599,-468.852,-411.609,0,-357.123	1/2:203:0,127,75:0:0:127,75:4551,2617:-583.137,-211.977,-173.746,-371.314,0,-348.736	1/2:170:0,116,52:0:0:116,52:4154,1800:-484.233,-145.479,-110.559,-338.747,0,-323.094	1/2:204:0,150,53:0:0:150,53:5338,1829:-582.975,-147.924,-102.77,-435.146,0,-419.191	1/2:189:0,60,129:0:0:60,129:2124,4525:-540.936,-367.94,-349.878,-173.348,0,-134.516	1/2:87:0,16,70:0:0:16,70:576,2380:-239.423,-192.423,-187.606,-47.0527,0,-25.9806	1/2:124:0,43,81:0:0:43,81:1527,2794:-350.136,-225.981,-213.037,-124.506,0,-100.122	1/2:118:0,97,20:0:0:97,20:3472,702:-340.135,-57.0234,-27.8235,-283.128,0,-277.108	1/2:51:0,28,22:0:0:28,22:1004,764:-144.06,-62.1611,-53.7323,-82.0368,0,-75.4142	1/2:64:0,19,44:0:0:19,44:680,1537:-180.489,-125.034,-119.315,-55.5087,0,-42.2634	1/1:24:0,22,2:0:0:22,2:777,72:-69.8911,-6.62266,0,-64.0157,-0.387998,-63.4136	1/2:48:0,14,34:0:0:14,34:495,1182:-136.732,-96.4156,-92.2012,-40.6685,0,-30.4335	1/2:23:0,10,13:0:0:10,13:360,440:-65.3851,-36.0016,-32.9913,-29.734,0,-25.8206	1/2:42:0,25,17:0:0:25,17:900,582:-120.879,-47.4344,-39.9087,-73.7934,0,-68.6759	1/2:115:0,85,30:0:0:85,30:3040,1044:-333.055,-85.1714,-59.5839,-248.234,0,-239.203	1/2:104:0,50,53:0:0:50,53:1778,1834:-292.843,-147.946,-132.895,-145.023,0,-129.069	1/2:109:0,46,63:0:0:46,63:1648,2201:-313.609,-179.203,-165.356,-134.76,0,-115.795	1/2:92:0,52,38:0:0:52,38:1861,1343:-261.033,-109.279,-93.625,-151.787,0,-140.348	1/2:28:0,13,15:0:0:13,15:464,519:-80.2136,-42.3993,-38.4859,-38.1655,0,-33.65	1/2:37:0,11,26:0:0:11,26:392,917:-106.901,-74.9475,-71.6361,-32.3087,0,-24.4819	1/2:9:0,6,3:0:0:6,3:216,103:-26.3382,-8.70347,-6.89729,-17.9834,0,-17.0803	1/2:9:0,6,2:0:0:6,2:216,72:-23.622,-5.96636,-4.16018,-17.7446,0,-17.1425	1/2:5:0,3,2:0:0:3,2:108,72:-15.0421,-6.22973,-5.32664,-9.17208,0,-8.57002	1/2:5:0,4,1:0:0:4,1:144,36:-15.0445,-3.29465,-2.09053,-12.1095,0,-11.8085	1/2:9:0,8,1:0:0:8,1:288,36:-26.7942,-3.29465,-0.88641,-23.8592,0,-23.5581	1/2:293:0,190,103:0:0:190,103:6746,3625:-844.808,-295.172,-237.976,-549.989,0,-518.983	1/2:18:0,14,4:0:0:14,4:500,144:-52.8675,-12.1058,-7.89136,-41.1208,0,-39.9167	1/2:100:0,72,28:0:0:72,28:2562,975:-287.96,-79.2245,-57.5503,-209.084,0,-200.655	1/2:2:0,1,1:0:0:1,1:36,36:-6.23371,-3.29624,-2.99521,-3.29724,0,-2.99621	1/2:68:0,49,19:0:0:49,19:1764,677:-199.342,-55.4677,-40.7172,-144.232,0,-138.512	1/2:89:0,61,28:0:0:61,28:2176,993:-258.335,-81.1483,-62.7855,-177.541,0,-169.112	1/2:71:0,34,37:0:0:34,37:1220,1299:-205.479,-105.971,-95.7356,-99.8635,0,-88.7254	1/2:127:0,93,34:0:0:93,34:3331,1203:-369.97,-98.328,-70.3322,-271.996,0,-261.761	1/2:172:1,126,45:1:36:126,45:4516,1562:-492.007,-123.985,-88.9925,-365.376,0,-354.767	1/2:49:0,23,26:0:0:23,26:824,921:-142.584,-75.381,-68.4573,-67.5596,0,-59.7328	1/2:26:0,8,18:0:0:8,18:288,608:-72.9591,-49.5852,-47.1769,-23.7256,0,-18.3071	1/2:96:0,66,29:0:0:66,29:2364,1009:-274.929,-82.1278,-62.2598,-192.947,0,-184.217	1/2:57:0,33,24:0:0:33,24:1180,804:-161.083,-64.8696,-54.9356,-96.5564,0,-89.3317	1/2:57:0,19,38:0:0:19,38:680,1330:-163.785,-108.331,-102.611,-55.8096,0,-44.3705	1/2:34:0,28,6:0:0:28,6:991,190:-96.3492,-15.5975,-7.16867,-81.0747,0,-79.2685	1/2:4:0,3,1:0:0:3,1:104,36:-11.7405,-3.29724,-2.39415,-8.79971,0,-8.49868	1/2:70:0,47,23:0:0:47,23:1681,812:-203.413,-66.3416,-52.1931,-137.425,0,-130.501	1/2:12:0,3,9:0:0:3,9:108,314:-34.6935,-25.8784,-24.9753,-9.17208,0,-6.46281	1/2:2:0,1,1:0:0:1,1:36,35:-6.13804,-3.19553,-2.8945,-3.29724,0,-2.99621	1/2:61:0,41,20:0:0:41,20:1476,695:-177.17,-56.835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chr07	21989865	.	T	C	96976.5	PASS	AB=0.434387;ABP=167.428;AC=131;AF=0.696809;AN=188;AO=4872;CIGAR=1X;DP=7382;DPB=7382;DPRA=20.038;EPP=10582.4;EPPR=5377.63;GTI=2;LEN=1;MEANALT=1.03261;MQM=57.7014;MQMR=57.9266;NS=94;NUMALT=1;ODDS=0.239478;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172756;QR=89531;RO=2507;RPL=1;RPP=10573.7;RPPR=5231.91;RPR=4871;RUN=1;SAF=1;SAP=10573.7;SAR=4871;SRF=17;SRP=5300.23;SRR=2490;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:41,20:41:1451:20:689:-43.9506,0,-112.47	0/1:58:43,15:43:1544:15:528:-30.3406,0,-121.548	0/1:87:45,42:45:1620:42:1493:-107.616,0,-119.775	0/1:159:82,77:82:2923:77:2729:-197.268,0,-215.31	1/1:31:0,31:0:0:31:1093:-98.6768,-9.33193,0	1/1:35:0,35:0:0:35:1251:-112.793,-10.5361,0	1/1:90:0,90:0:0:90:3211:-289.068,-27.0927,0	0/1:89:50,39:50:1796:39:1383:-97.9425,0,-134.811	1/1:98:0,98:0:0:98:3477:-312.555,-29.5009,0	0/1:87:51,36:51:1824:36:1271:-88.2621,0,-138.052	1/1:58:0,58:0:0:58:2048:-184.043,-17.4597,0	1/1:79:0,79:0:0:79:2791:-249.824,-23.7814,0	0/1:76:40,36:40:1416:36:1260:-90.4041,0,-104.814	0/1:86:47,39:47:1661:39:1356:-96.4154,0,-123.803	0/1:69:38,31:38:1360:31:1099:-78.2915,0,-101.815	1/1:50:0,50:0:0:50:1771:-159.011,-15.0515,0	1/1:39:0,39:0:0:39:1361:-122.735,-11.7402,0	1/1:35:0,35:0:0:35:1252:-112.756,-10.5361,0	0/1:40:21,19:21:744:19:680:-49.4022,0,-55.2007	0/1:93:57,36:57:2044:36:1272:-86.2943,0,-156.151	1/1:132:0,132:0:0:132:4672:-420.293,-39.736,0	0/1:96:74,22:74:2628:22:788:-42.0574,0,-207.408	1/1:88:1,87:1:36:87:3103:-275.668,-22.8928,0	0/1:64:30,34:30:1072:34:1216:-90.3894,0,-77.5025	0/1:67:38,29:38:1364:29:1032:-72.9925,0,-102.867	0/1:217:130,87:130:4642:87:3047:-208.847,0,-351.676	1/1:147:0,147:0:0:147:5243:-471.121,-44.2514,0	1/1:27:0,27:0:0:27:950:-85.648,-8.12781,0	0/1:193:100,93:100:3566:93:3311:-239.37,0,-262.321	1/1:108:5,103:5:180:103:3687:-313.053,-15.9592,0	1/1:103:2,101:2:72:101:3563:-313.705,-24.1698,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:1,10:1:36:10:360:-29.2002,0,-0.286945	1/1:2:0,2:0:0:2:72:-6.83481,-0.60206,0	0/1:7:3,4:3:108:4:133:-10.1814,0,-7.96514	0/1:16:8,8:8:280:8:288:-21.4436,0,-20.7098	0/1:200:107,93:107:3820:93:3311:-237.513,0,-282.793	0/1:115:65,50:65:2309:50:1788:-126.399,0,-173.257	0/1:82:40,42:40:1402:42:1480:-108.519,0,-101.654	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:115:81,34:81:2892:34:1190:-72.6003,0,-225.547	0/1:47:30,17:30:1067:17:595:-39.3638,0,-82.1479	0/1:117:66,51:66:2364:51:1804:-127.393,0,-177.79	0/1:52:26,26:26:928:26:913:-66.602,0,-68.1243	0/1:53:28,25:28:1004:25:900:-65.2672,0,-74.5084	1/1:87:0,87:0:0:87:3083:-276.884,-26.1896,0	1/1:49:0,49:0:0:49:1727:-155.488,-14.7505,0	0/1:125:66,59:66:2364:59:2086:-150.245,0,-175.13	1/1:64:0,64:0:0:64:2259:-203.304,-19.2659,0	1/1:103:0,103:0:0:103:3657:-328.274,-31.0061,0	0/1:113:63,50:63:2260:50:1784:-126.628,0,-169.032	0/1:15:8,7:8:288:7:252:-18.4656,0,-21.7487	0/1:115:53,62:53:1896:62:2213:-164.408,0,-136.035	1/1:62:0,62:0:0:62:2224:-199.979,-18.6639,0	0/1:21:17,4:17:608:4:129:-5.60321,0,-48.6464	0/1:125:73,52:73:2604:52:1825:-126.806,0,-196.763	0/1:40:26,13:26:932:13:455:-29.1322,0,-72	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7294	1/1:11:0,11:0:0:11:396:-35.9045,-3.31133,0	1/1:81:0,81:0:0:81:2881:-259.444,-24.3834,0	1/1:115:0,115:0:0:115:4076:-366.149,-34.6185,0	0/1:4:3,1:3:108:1:36:-2.39371,0,-8.8698	1/1:151:0,151:0:0:151:5409:-486.534,-45.4555,0	1/1:112:3,109:3:108:109:3867:-337.568,-23.6875,0	0/1:60:38,22:38:1364:22:792:-53.5439,0,-104.884	1/1:48:0,48:0:0:48:1707:-153.835,-14.4494,0	0/1:111:65,46:65:2318:46:1656:-115.885,0,-175.295	0/1:122:98,24:98:3528:24:847:-39.7436,0,-280.858	0/1:43:23,20:23:820:20:711:-51.3712,0,-61.1222	1/1:68:0,67:0:0:67:2371:-212.989,-20.169,0	0/1:58:35,23:35:1252:23:815:-56.1289,0,-95.4526	0/1:15:11,4:11:377:4:144:-8.79652,0,-29.7328	1/1:124:0,124:0:0:124:4365:-392.423,-37.3277,0	0/1:42:21,21:21:748:21:741:-54.2811,0,-54.9614	1/1:131:1,130:1:36:130:4605:-408.98,-35.8367,0	1/1:80:1,79:1:21:79:2827:-252.385,-21.9825,0	0/1:122:76,46:76:2724:46:1608:-108.211,0,-208.445	1/1:59:0,59:0:0:59:2108:-189.828,-17.7608,0	1/1:3:0,3:0:0:3:108:-10.0623,-0.90309,0	1/1:57:0,57:0:0:57:2029:-182.687,-17.1587,0	0/1:82:41,41:41:1459:41:1459:-106.018,0,-106.617	0/1:192:101,91:101:3613:91:3230:-232.636,0,-267.403	0/1:100:50,50:50:1783:50:1748:-127.316,0,-130.462	0/1:69:35,34:35:1252:34:1194:-86.9243,0,-92.1559	0/1:39:20,19:20:720:19:676:-49.2899,0,-53.311	0/1:134:67,67:67:2396:67:2385:-174.401,0,-175.424	1/1:18:0,18:0:0:18:640:-57.845,-5.41854,0	1/1:83:0,83:0:0:83:2931:-263.136,-24.9855,0	1/1:78:0,78:0:0:78:2734:-245.95,-23.4803,0	0/1:63:31,32:31:1108:32:1125:-82.5444,0,-81.0309	0/1:163:84,79:84:3012:79:2791:-202.28,0,-221.848	0/1:61:35,26:35:1247:26:927:-65.3331,0,-94.1083	1/1:188:0,187:0:0:187:6649:-597.963,-56.2926,0	1/1:83:0,83:0:0:83:2941:-264.752,-24.9855,0
chr07	21989903	.	A	C	43637.8	PASS	AB=0.560746;ABP=145.734;AC=56;AF=0.297872;AN=188;AO=2514;CIGAR=1X;DP=7516;DPB=7516;DPRA=1.09833;EPP=5462.09;EPPR=10864.7;GTI=3;LEN=1;MEANALT=1;MQM=57.9515;MQMR=57.6881;NS=94;NUMALT=1;ODDS=1.53726;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89842;QR=179138;RO=5002;RPL=2514;RPP=5462.09;RPPR=10864.7;RPR=0;RUN=1;SAF=0;SAP=5462.09;SAR=2514;SRF=0;SRP=10864.7;SRR=5002;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:19,41:19:680:41:1453:-112.964,0,-43.4506	0/1:58:16,42:16:576:42:1512:-118.67,0,-34.5624	0/1:90:46,44:46:1652:44:1580:-115.161,0,-121.014	0/1:157:76,81:76:2728:81:2892:-213.213,0,-198.334	0/0:34:34,0:34:1212:0:0:0,-10.235,-108.557	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.768	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.017	0/1:89:40,49:40:1432:49:1737:-129.564,0,-101.413	0/0:105:105,0:105:3768:0:0:0,-31.6081,-338.648	0/1:87:36,51:36:1277:51:1820:-137.729,0,-88.8004	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.143	0/0:79:79,0:79:2840:0:0:0,-23.7814,-254.163	0/1:79:37,42:37:1332:42:1508:-112.188,0,-95.6644	0/1:91:41,50:41:1468:50:1779:-132.87,0,-104.843	0/1:70:32,38:32:1144:38:1368:-102.233,0,-82.0433	0/0:51:51,0:51:1832:0:0:0,-15.3525,-164.473	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.301	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.875	0/1:40:19,21:19:680:21:752:-55.93,0,-49.4022	0/1:97:37,60:37:1328:60:2160:-165.354,0,-89.7925	0/0:135:135,0:135:4844:0:0:0,-40.639,-435.207	0/1:92:22,70:22:788:70:2500:-197.266,0,-43.2615	0/0:89:88,1:88:3153:1:36:0,-23.1938,-280.127	0/1:62:33,29:33:1184:29:1035:-74.7877,0,-88.1132	0/1:68:30,38:30:1057:38:1349:-101.192,0,-74.9541	0/1:218:89,129:89:3176:129:4610:-348.97,0,-220.218	0/0:149:149,0:149:5356:0:0:0,-44.8535,-482.056	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.4427	0/1:193:92,101:92:3300:101:3617:-266.792,0,-238.476	0/0:108:103,5:103:3677:5:180:0,-15.9592,-312.934	0/0:104:103,1:103:3688:1:36:0,-27.7093,-328.124	0/1:4:1,3:1:32:3:100:-8.12632,0,-1.99315	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.2002	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0724	0/1:7:4,3:4:144:3:108:-7.96514,0,-11.1321	0/1:17:9,8:9:324:8:288:-21.1257,0,-24.3106	0/1:203:96,107:96:3436:107:3823:-282.742,0,-247.795	0/1:118:51,67:51:1836:67:2389:-179.531,0,-129.814	0/1:85:42,43:42:1504:43:1502:-109.739,0,-109.453	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:117:35,82:35:1256:82:2940:-229.331,0,-77.9423	0/1:47:17,30:17:612:30:1071:-82.5083,0,-39.9778	0/1:115:54,61:54:1932:61:2165:-160.487,0,-139.483	0/1:54:28,26:28:1004:26:936:-68.243,0,-74.1911	0/1:54:24,30:24:864:30:1076:-80.6393,0,-61.7727	0/0:93:93,0:93:3290:0:0:0,-27.9958,-294.67	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.635	0/1:128:62,66:62:2228:66:2360:-174.083,0,-162.104	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.573	0/0:108:108,0:108:3872:0:0:0,-32.5112,-347.37	0/1:114:50,64:50:1796:64:2287:-170.987,0,-127.4	0/1:15:7,8:7:248:8:288:-21.7487,0,-18.1011	0/1:117:63,54:63:2260:54:1928:-138.311,0,-168.211	0/0:64:64,0:64:2300:0:0:0,-19.2659,-206.814	0/1:22:4,18:4:140:18:648:-51.9438,0,-6.31875	0/1:122:52,70:52:1868:70:2488:-187.28,0,-131.55	0/1:40:13,27:13:468:27:964:-74.9333,0,-30.3673	1/1:6:0,6:0:0:6:216:-19.7294,-1.80618,0	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0188	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.002	0/0:123:123,0:123:4407:0:0:0,-37.0267,-396.276	0/1:4:1,3:1:36:3:108:-8.8698,0,-2.39371	0/0:154:154,0:154:5497:0:0:0,-46.3586,-494.441	0/0:113:110,3:110:3952:3:108:0,-23.9885,-344.85	0/1:64:25,39:25:900:39:1388:-105.838,0,-61.9877	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.185	0/1:117:49,68:49:1760:68:2415:-182.134,0,-123.426	0/1:127:25,102:25:880:102:3656:-290.888,0,-41.2074	0/1:43:20,23:20:720:23:828:-61.8433,0,-52.1836	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.618	0/1:58:23,35:23:828:35:1256:-95.8123,0,-57.3009	0/1:15:4,11:4:144:11:396:-31.457,0,-8.79652	0/0:129:129,0:129:4628:0:0:0,-38.8329,-415.893	0/1:42:21,21:21:748:21:752:-55.3131,0,-54.915	0/0:136:136,0:136:4849:0:0:0,-40.9401,-433.362	0/0:85:84,1:84:3001:1:36:0,-21.9897,-266.554	0/1:120:46,74:46:1637:74:2652:-202.587,0,-111.301	0/0:65:65,0:65:2328:0:0:0,-19.5669,-208.941	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0623	0/0:59:59,0:59:2120:0:0:0,-17.7608,-190.868	0/1:82:44,38:44:1553:38:1359:-97.6118,0,-114.522	0/1:197:96,101:96:3402:101:3621:-266.616,0,-245.83	0/1:98:48,50:48:1711:50:1792:-131.809,0,-124.57	0/1:68:33,35:33:1184:35:1260:-93.1768,0,-86.1718	0/1:40:20,20:20:720:20:716:-52.6492,0,-52.9488	0/1:135:67,68:67:2412:68:2421:-177.12,0,-176.547	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.5664	0/0:83:83,0:83:2984:0:0:0,-24.9855,-267.363	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.116	0/1:63:32,31:32:1148:31:1093:-79.6947,0,-84.6187	0/1:170:85,85:85:3039:85:3048:-222.988,0,-222.354	0/1:63:28,35:28:1004:35:1256:-94.3166,0,-71.6413	0/0:188:188,0:188:6748:0:0:0,-56.5936,-607.127	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.285
chr07	22025293	.	CAG	CAA	131299	PASS	AB=0.45983;ABP=67.3843;AC=129;AF=0.693548;AN=186;AO=5164;CIGAR=2M1X;DP=7763;DPB=7763;DPRA=16.5693;EPP=1718.83;EPPR=358.477;GTI=1;LEN=1;MEANALT=1.77528;MQM=58.0411;MQMR=59.9758;NS=93;NUMALT=1;ODDS=1.45969;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184097;QR=83346;RO=2440;RPL=1572;RPP=1718.83;RPPR=358.477;RPR=3592;RUN=1;SAF=0;SAP=11216.5;SAR=5164;SRF=0;SRP=5301.4;SRR=2440;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:19,34:19:651:34:1206:-90.9838,0,-42.9553	0/1:41:24,17:24:812:17:608:-42.004,0,-61.0487	0/1:121:58,59:58:2023:59:2120:-154.313,0,-146.867	0/1:218:107,105:107:3717:105:3749:-272.603,0,-270.665	1/1:47:0,46:0:0:46:1644:-147.86,-13.8474,0	1/1:39:0,36:0:0:36:1280:-115.172,-10.8371,0	1/1:54:0,54:0:0:54:1931:-173.886,-16.2556,0	0/1:100:59,38:59:2036:38:1349:-92.1782,0,-154.026	1/1:128:0,121:0:0:121:4338:-389.872,-36.4246,0	0/1:70:28,41:28:946:41:1472:-111.087,0,-64.363	1/1:40:0,39:0:0:39:1389:-124.666,-11.7402,0	1/1:106:0,99:0:0:99:3490:-313.342,-29.802,0	0/1:78:40,35:40:1368:35:1260:-90.8228,0,-100.575	0/1:41:15,26:15:515:26:932:-71.7648,0,-34.3321	0/1:80:48,32:48:1666:32:1122:-76.878,0,-126.14	1/1:58:0,58:0:0:58:2074:-185.556,-17.4597,0	1/1:25:0,24:0:0:24:856:-75.5042,-7.22472,0	1/1:24:0,24:0:0:24:864:-77.5239,-7.22472,0	0/1:32:19,12:19:657:12:432:-29.6038,0,-49.8372	0/1:186:87,94:87:3022:94:3356:-246.557,0,-217.448	1/1:163:0,159:0:0:159:5645:-506.346,-47.8638,0	0/1:112:72,39:72:2452:39:1392:-91.8564,0,-187.248	1/1:100:0,97:0:0:97:3458:-309.396,-29.1999,0	0/1:59:24,33:24:809:33:1176:-88.4645,0,-55.7052	0/1:132:66,65:66:2256:65:2316:-168.573,0,-163.51	0/1:204:107,93:107:3615:93:3339:-239.424,0,-265.075	1/1:223:1,222:1:36:222:7923:-707.375,-63.5314,0	1/1:24:0,22:0:0:22:788:-70.8118,-6.62266,0	0/1:297:167,124:167:5651:124:4412:-308.089,0,-420.85	1/1:110:1,109:1:33:109:3885:-346.238,-29.8142,0	1/1:98:0,93:0:0:93:3304:-295.797,-27.9958,0	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2599	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:6:0,5:0:0:5:180:-16.3236,-1.50515,0	0/1:9:6,3:6:207:3:108:-7.32889,0,-16.2576	0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686	0/1:170:103,65:103:3576:65:2321:-158.156,0,-271.167	0/1:150:71,79:71:2477:79:2829:-209.468,0,-178.029	0/1:54:28,26:28:906:26:928:-67.0379,0,-65.5803	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/1:103:54,48:54:1865:48:1720:-122.976,0,-137.138	0/1:29:17,12:17:589:12:428:-30.0791,0,-44.6035	0/1:129:55,74:55:1814:74:2627:-197.692,0,-124.697	0/1:51:28,23:28:950:23:828:-59.4704,0,-70.447	0/1:55:31,23:31:1010:23:828:-58.0598,0,-74.5848	1/1:123:0,120:0:0:120:4266:-383.363,-36.1236,0	1/1:105:0,104:0:0:104:3713:-332.671,-31.3071,0	0/1:159:92,65:92:3101:65:2332:-161.254,0,-231.723	1/1:112:0,108:0:0:108:3840:-344.156,-32.5112,0	1/1:59:0,58:0:0:58:2067:-185.12,-17.4597,0	0/1:147:62,82:62:2113:82:2928:-219.773,0,-146.829	0/1:3:2,1:2:70:1:36:-2.69474,0,-5.74424	0/1:131:77,54:77:2625:54:1914:-132.998,0,-197.058	1/1:45:1,44:1:36:44:1568:-137.669,-9.94808,0	0/1:4:2,2:2:61:2:72:-5.6326,0,-4.58911	0/1:131:85,44:85:2859:44:1551:-100.259,0,-218.442	0/1:48:18,30:18:620:30:1056:-80.6131,0,-41.672	.:.:.:.:.:.:.:.	1/1:12:0,11:0:0:11:388:-34.9258,-3.31133,0	1/1:79:0,77:0:0:77:2768:-248.995,-23.1793,0	1/1:65:0,63:0:0:63:2260:-201.076,-18.9649,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:132:0,131:0:0:131:4638:-416.418,-39.4349,0	1/1:149:0,147:0:0:147:5238:-468,-44.2514,0	0/1:69:29,40:29:994:40:1417:-106.283,0,-68.9957	1/1:42:0,39:0:0:39:1387:-124.291,-11.7402,0	0/1:130:74,53:74:2555:53:1896:-131.101,0,-191.702	0/1:144:97,45:97:3334:45:1601:-99.822,0,-257.248	0/1:22:13,8:13:461:8:279:-18.813,0,-35.193	1/1:79:0,76:0:0:76:2693:-240.382,-22.8783,0	0/1:36:20,14:20:664:14:485:-33.4354,0,-49.5601	0/1:28:18,9:18:599:9:309:-19.7486,0,-45.8903	1/1:186:0,174:0:0:174:6206:-557.369,-52.3792,0	0/1:84:40,42:40:1391:42:1508:-110.215,0,-100.518	1/1:173:1,169:1:36:169:6033:-537.216,-47.9085,0	1/1:156:2,148:2:72:148:5273:-465.46,-38.6553,0	0/1:82:20,59:20:689:59:2088:-162.994,0,-38.2745	1/1:49:2,47:2:72:47:1684:-144.018,-7.91375,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:63:0,61:0:0:61:2180:-196.039,-18.3628,0	0/1:92:47,45:47:1600:45:1608:-117.12,0,-116.587	0/1:199:97,101:97:3312:101:3598:-262.212,0,-238.493	0/1:63:37,23:37:1229:23:828:-56.3676,0,-92.5311	0/1:65:31,33:31:1037:33:1188:-86.9319,0,-74.1772	0/1:60:36,24:36:1246:24:858:-58.6167,0,-94.3761	0/1:137:65,69:65:2252:69:2480:-182.316,0,-162.312	1/1:23:0,23:0:0:23:813:-73.1468,-6.92369,0	1/1:67:0,63:0:0:63:2236:-201.164,-18.9649,0	1/1:74:0,72:0:0:72:2564:-229.566,-21.6742,0	0/1:40:20,20:20:680:20:716:-52.6815,0,-49.4743	0/1:80:55,25:55:1844:25:900:-57.1936,0,-142.151	0/1:65:41,24:41:1415:24:856:-57.7408,0,-108.047	1/1:19:0,19:0:0:19:675:-60.859,-5.71957,0	1/1:82:0,80:0:0:80:2840:-255.323,-24.0824,0
chr07	22025306	.	C	T	109310	PASS	AB=0.473172;ABP=31.9056;AC=129;AF=0.693548;AN=186;AO=5358;CIGAR=1X;DP=7830;DPB=7830;DPRA=16.7127;EPP=11438.8;EPPR=5012;GTI=0;LEN=1;MEANALT=1.04494;MQM=57.449;MQMR=59.9587;NS=93;NUMALT=1;ODDS=0.207842;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191934;QR=87918;RO=2468;RPL=5335;RPP=11438.8;RPPR=5012;RPR=23;RUN=1;SAF=0;SAP=11637.8;SAR=5358;SRF=0;SRP=5362.2;SRR=2468;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:20,33:20:704:33:1171:-87.811,0,-47.7299	0/1:42:25,17:25:887:17:606:-41.6666,0,-67.5049	0/1:123:60,63:60:2145:63:2256:-162.146,0,-156.289	0/1:222:108,114:108:3868:114:4084:-295.417,0,-281.486	1/1:49:0,49:0:0:49:1760:-157.227,-14.7505,0	1/1:40:0,40:0:0:40:1417:-125.705,-12.0412,0	1/1:55:0,55:0:0:55:1976:-177.933,-16.5567,0	0/1:99:60,39:60:2148:39:1400:-96.3449,0,-163.784	1/1:131:0,131:0:0:131:4693:-416.715,-39.4349,0	0/1:74:33,41:33:1179:41:1460:-109.166,0,-84.141	1/1:40:0,40:0:0:40:1440:-129.459,-12.0412,0	1/1:107:0,106:0:0:106:3800:-340.336,-31.9092,0	0/1:77:39,37:39:1388:37:1332:-96.4351,0,-101.981	0/1:41:16,25:16:576:25:884:-67.4812,0,-39.8328	0/1:79:48,31:48:1712:31:1112:-75.966,0,-130.584	1/1:63:0,63:0:0:63:2264:-200.751,-18.9649,0	1/1:25:0,25:0:0:25:900:-79.3874,-7.52575,0	1/1:24:0,24:0:0:24:864:-77.5239,-7.22472,0	0/1:33:19,14:19:680:14:504:-35.7258,0,-51.5952	0/1:192:92,100:92:3284:100:3596:-262.631,0,-237.983	1/1:165:0,165:0:0:165:5917:-528.972,-49.67,0	0/1:115:75,40:75:2653:40:1432:-94.4868,0,-204.395	1/1:105:2,103:2:72:103:3684:-321.055,-24.7714,0	0/1:58:24,34:24:864:34:1209:-90.5578,0,-60.6228	0/1:128:62,66:62:2212:66:2345:-172.427,0,-160.813	0/1:201:103,98:103:3692:98:3520:-253.793,0,-271.975	1/1:229:1,228:1:36:228:8149:-728.037,-65.3376,0	1/1:25:0,25:0:0:25:900:-80.6615,-7.52575,0	0/1:298:167,131:167:5980:131:4708:-330.496,0,-448.599	1/1:111:1,110:1:36:110:3948:-351.164,-29.8161,0	1/1:99:0,99:0:0:99:3533:-316.397,-29.802,0	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-18.4048,-1.80618,0	0/1:10:6,4:6:216:4:144:-10.2666,0,-16.7802	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:175:108,67:108:3844:67:2412:-164.092,0,-293.206	0/1:151:72,79:72:2556:79:2836:-209.492,0,-184.836	0/1:54:28,26:28:996:26:924:-66.7067,0,-73.6993	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:105:56,49:56:1985:49:1756:-125.552,0,-147.314	0/1:30:18,12:18:636:12:432:-30.1405,0,-48.5371	0/1:126:53,73:53:1864:73:2616:-197.533,0,-130.107	0/1:49:26,23:26:936:23:828:-60.0725,0,-69.809	0/1:56:32,24:32:1140:24:860:-60.6455,0,-86.0515	1/1:123:0,123:0:0:123:4400:-394.795,-37.0267,0	1/1:108:0,108:0:0:108:3865:-345.185,-32.5112,0	0/1:161:94,67:94:3308:67:2412:-167.511,0,-249.202	1/1:114:0,113:0:0:113:4049:-359.75,-34.0164,0	1/1:60:0,60:0:0:60:2152:-192.504,-18.0618,0	0/1:149:63,86:63:2237:86:3080:-230.857,0,-156.739	0/1:3:2,1:2:68:1:36:-2.69474,0,-5.55462	0/1:133:79,54:79:2824:54:1929:-133.347,0,-214.362	1/1:45:1,44:1:36:44:1580:-138.749,-9.94808,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:130:82,47:82:2909:47:1688:-111.569,0,-222.853	0/1:45:16,29:16:572:29:1036:-79.6811,0,-38.2671	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:432:-39.0927,-3.61236,0	1/1:79:0,79:0:0:79:2806:-252.627,-23.7814,0	1/1:65:2,63:2:72:63:2268:-194.779,-12.7302,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:131:0,131:0:0:131:4703:-422.113,-39.4349,0	1/1:150:0,150:0:0:150:5353:-476.252,-45.1545,0	0/1:70:30,40:30:1053:40:1431:-106.196,0,-74.0065	1/1:42:0,42:0:0:42:1496:-133.016,-12.6433,0	0/1:132:75,57:75:2669:57:2052:-143.317,0,-200.718	0/1:148:101,47:101:3612:47:1684:-104.899,0,-280.734	0/1:24:14,10:14:504:10:360:-24.9786,0,-38.4734	1/1:80:0,80:0:0:80:2845:-252.725,-24.0824,0	0/1:38:22,16:22:783:16:576:-40.2088,0,-59.3538	0/1:28:19,9:19:676:9:324:-20.5292,0,-52.7392	1/1:186:0,186:0:0:186:6653:-593.55,-55.9916,0	0/1:83:40,43:40:1411:43:1544:-113.4,0,-102.301	1/1:173:1,172:1:36:172:6133:-544.186,-48.4799,0	1/1:157:2,155:2:72:155:5554:-487.147,-40.425,0	0/1:79:17,62:17:595:62:2213:-172.21,0,-30.0953	1/1:49:2,47:2:72:47:1688:-144.868,-7.91375,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:63:0,63:0:0:63:2252:-201.395,-18.9649,0	0/1:96:50,46:50:1788:46:1644:-118.837,0,-132.304	0/1:202:98,104:98:3491:104:3721:-268.461,0,-253.593	0/1:62:36,26:36:1283:26:936:-65.255,0,-97.1088	0/1:65:31,34:31:1099:34:1224:-88.6897,0,-79.6525	0/1:60:36,24:36:1292:24:864:-58.6589,0,-98.522	0/1:136:65,71:65:2332:71:2552:-187.946,0,-169.199	1/1:24:0,24:0:0:24:860:-75.8542,-7.22472,0	1/1:67:1,66:1:36:66:2376:-209.771,-16.5707,0	1/1:74:1,73:1:36:73:2623:-231.2,-18.6779,0	0/1:41:21,20:21:756:20:720:-52.7415,0,-56.025	0/1:80:52,28:52:1843:28:1004:-66.5261,0,-142.067	0/1:62:38,24:38:1355:24:860:-59.0305,0,-103.549	1/1:19:0,19:0:0:19:684:-61.6333,-5.71957,0	1/1:82:0,82:0:0:82:2952:-265.546,-24.6845,0
chr07	22034904	.	G	C	93466.5	PASS	AB=0.469952;ABP=72.5662;AC=56;AF=0.301075;AN=186;AO=4193;CIGAR=1X;DP=15341;DPB=15341;DPRA=1.10056;EPP=9107.99;EPPR=24171.5;GTI=1;LEN=1;MEANALT=1.06557;MQM=59.9793;MQMR=59.9887;NS=93;NUMALT=1;ODDS=1.41572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149142;QR=396611;RO=11142;RPL=2138;RPP=6.57798;RPPR=4.07752;RPR=2055;RUN=1;SAF=2138;SAP=6.57798;SAR=2055;SRF=5611;SRP=4.2576;SRR=5531;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5241	0/1:210:104,106:104:3709:106:3792:-278.262,0,-270.795	0/1:172:96,75:96:3415:75:2670:-188.706,0,-255.729	0/1:388:209,179:209:7495:179:6360:-455.694,0,-557.79	0/0:106:106,0:106:3771:0:0:0,-31.9092,-339.588	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:213:213,0:213:7577:0:0:0,-64.1194,-681.971	0/1:188:109,79:109:3844:79:2840:-199.244,0,-289.563	0/0:148:148,0:148:5217:0:0:0,-44.5524,-469.671	0/1:220:110,110:110:3921:110:3932:-287.846,0,-286.856	0/0:125:125,0:125:4475:0:0:0,-37.6287,-402.919	0/0:160:160,0:160:5630:0:0:0,-48.1648,-506.827	0/1:188:89,98:89:3188:98:3471:-255.952,0,-230.483	0/1:165:83,82:83:2937:82:2898:-211.385,0,-214.892	0/1:162:79,83:79:2801:83:2972:-218.946,0,-203.563	0/0:145:145,0:145:5123:0:0:0,-43.6493,-461.211	0/0:162:161,0:161:5764:0:0:0,-48.4658,-518.498	0/0:176:176,0:176:6264:0:0:0,-52.9813,-563.854	0/1:81:40,41:40:1418:41:1437:-105.239,0,-103.532	0/1:310:171,139:171:6103:139:4931:-350.615,0,-456.054	0/0:239:238,0:238:8426:0:0:0,-71.6451,-757.988	0/1:65:27,38:27:964:38:1330:-100.429,0,-67.5099	0/0:148:147,1:147:5235:1:36:0,-40.9542,-467.689	0/1:262:145,117:145:5185:117:4149:-294.723,0,-387.919	0/1:83:56,27:56:1986:27:972:-62.8124,0,-154.028	0/1:379:195,184:195:6956:184:6608:-480.707,0,-512.016	0/0:253:253,0:253:9023:0:0:0,-76.1606,-812.05	0/0:85:85,0:85:3028:0:0:0,-25.5875,-272.752	0/1:380:203,177:203:7247:177:6271:-450.092,0,-537.891	0/0:148:143,5:143:5112:5:171:0,-28.827,-444.496	0/0:198:198,0:198:7052:0:0:0,-59.6039,-634.741	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:411:218,193:218:7750:193:6870:-494.647,0,-573.812	0/1:186:119,67:119:4208:67:2365:-157.113,0,-322.909	0/1:131:72,59:72:2567:59:2107:-150.464,0,-191.845	.:.:.:.:.:.:.:.	0/1:279:153,126:153:5449:126:4499:-321.092,0,-406.546	0/1:93:51,42:51:1828:42:1500:-107.299,0,-136.805	0/1:192:112,80:112:3989:80:2812:-195.519,0,-301.402	0/1:207:119,88:119:4210:88:3137:-220.242,0,-316.769	0/1:154:84,70:84:2995:70:2437:-173.225,0,-223.423	0/0:138:138,0:138:4896:0:0:0,-41.5421,-440.794	0/0:155:155,0:155:5528:0:0:0,-46.6596,-497.645	0/1:197:116,81:116:4145:81:2881:-200.223,0,-313.929	0/0:165:165,0:165:5878:0:0:0,-49.6699,-529.13	0/0:230:230,0:230:8216:0:0:0,-69.2369,-739.452	0/1:193:106,87:106:3767:87:3128:-223.646,0,-281.132	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:234:126,108:126:4495:108:3844:-275.715,0,-334.276	0/0:96:95,1:95:3404:1:36:0,-25.3006,-302.976	0/1:6:2,4:2:72:4:135:-10.6763,0,-5.03054	0/1:196:97,99:97:3453:99:3541:-259.895,0,-251.98	0/1:97:44,53:44:1553:53:1891:-140.237,0,-110.86	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:168:168,0:168:5992:0:0:0,-50.573,-539.386	0/0:233:232,1:232:8248:1:36:0,-66.5417,-738.738	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:248:248,0:248:8803:0:0:0,-74.6554,-792.263	0/0:264:259,5:259:9233:5:180:0,-62.9199,-814.391	0/1:157:90,67:90:3209:67:2398:-168.814,0,-241.77	0/0:135:135,0:135:4816:0:0:0,-40.639,-433.592	0/1:238:119,119:119:4216:119:4204:-306.895,0,-307.975	0/1:200:62,138:62:2223:138:4919:-382.653,0,-140.098	0/1:68:33,35:33:1180:35:1252:-92.515,0,-86.038	0/0:141:140,1:140:4989:1:36:0,-38.847,-445.56	0/1:215:108,107:108:3840:107:3810:-278.377,0,-281.075	0/1:17:5,12:5:180:12:423:-33.2876,0,-11.4346	0/0:169:169,0:169:6014:0:0:0,-50.8741,-541.366	0/1:94:47,47:47:1675:47:1680:-123.19,0,-122.74	0/0:294:292,2:292:10390:2:72:0,-81.6661,-928.185	0/0:292:292,0:292:10431:0:0:0,-87.9008,-938.439	0/1:156:92,64:92:3280:64:2289:-159.309,0,-248.46	0/0:189:187,2:187:6698:2:72:0,-50.0579,-596.057	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:179:179,0:179:6395:0:0:0,-53.8844,-575.637	0/1:163:89,74:89:3150:74:2639:-188.688,0,-234.656	0/1:433:226,206:226:8015:206:7291:-525.837,0,-590.966	0/1:232:130,102:130:4590:102:3598:-254.187,0,-343.429	0/1:138:81,57:81:2900:57:2011:-139.719,0,-219.694	0/1:192:101,91:101:3590:91:3229:-233.034,0,-265.44	0/1:297:155,141:155:5542:141:5007:-361.315,0,-409.435	0/0:103:103,0:103:3675:0:0:0,-31.0061,-330.954	0/0:142:142,0:142:5056:0:0:0,-42.7463,-455.186	0/0:155:155,0:155:5503:0:0:0,-46.6596,-495.398	0/1:82:52,30:52:1860:30:1080:-72.8288,0,-142.995	0/1:166:84,82:84:2988:82:2917:-212.793,0,-219.183	0/1:141:55,86:55:1955:86:3076:-234.623,0,-133.78	0/0:254:254,0:254:8956:0:0:0,-76.4616,-806.028	0/0:281:281,0:281:9978:0:0:0,-84.5894,-897.963
chr07	22059798	.	TCT	TTT,TT	77524	PASS	AB=0.481933,0.517164;ABP=9.28737,8.67535;AC=133,54;AF=0.707447,0.287234;AN=188;AO=2537,1150;CIGAR=1M1X1M,1M1D1M;DP=3689;DPB=3305.67;DPRA=39.6559,1.15263;EPP=5512.04,2500.2;EPPR=5.18177;GTI=2;LEN=1,1;MEANALT=1.60215,2;MQM=59.9306,59.9548;MQMR=60;NS=94;NUMALT=2;ODDS=1.89089;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=90690,40515;QR=36;RO=1;RPL=0,1;RPP=5512.04,2491.53;RPPR=5.18177;RPR=2537,1149;RUN=1,1;SAF=0,1;SAP=5512.04,2491.53;SAR=2537,1149;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,10,25:0:0:10,25:351,888:-101.278,-72.7133,-69.703,-28.9164,0,-21.3906	1/2:14:0,6,8:0:0:6,8:216,284:-41.1202,-23.4951,-21.6889,-17.9828,0,-15.5745	1/2:47:0,15,32:0:0:15,32:540,1109:-134.547,-90.4817,-85.9663,-44.4211,0,-34.7881	1/2:66:0,28,38:0:0:28,38:989,1352:-191.08,-110.541,-102.112,-80.8932,0,-69.454	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/1:24:0,24,0:0:0:24,0:856,0:-77.3504,-7.22472,0,-77.3504,-7.22472,-77.3504	1/1:59:0,59,0:0:0:59,0:2111,0:-190.231,-17.7608,0,-190.231,-17.7608,-190.231	1/2:76:0,35,41:0:0:35,41:1248,1433:-218.654,-116.922,-106.385,-102.085,0,-89.7432	1/1:67:0,67,0:0:0:67,0:2373,0:-213.808,-20.169,0,-213.808,-20.169,-213.808	1/2:50:0,21,29:0:0:21,29:756,1036:-146.511,-84.824,-78.5024,-62.0456,0,-53.3157	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/2:22:0,8,14:0:0:8,14:288,500:-64.6221,-41.1218,-38.7135,-23.8592,0,-19.6447	1/2:18:0,4,14:0:0:4,14:144,496:-52.5108,-40.7598,-39.5557,-12.1095,0,-7.89508	1/2:22:0,9,13:0:0:9,13:324,456:-63.9004,-37.4598,-34.7506,-26.7966,0,-22.8832	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/2:71:0,40,31:0:0:40,31:1417,1092:-204.602,-89.1713,-77.1301,-115.784,0,-106.452	1/1:50:0,50,0:0:0:50,0:1796,0:-161.922,-15.0515,0,-161.922,-15.0515,-161.922	1/2:95:0,25,70:0:0:25,70:896,2445:-272.31,-199.231,-191.705,-73.4346,0,-52.3625	1/1:60:0,60,0:0:0:60,0:2141,0:-192.956,-18.0618,0,-192.956,-18.0618,-192.956	1/2:57:0,35,22:0:0:35,22:1256,784:-166.713,-64.2613,-53.7252,-102.809,0,-96.1866	1/2:37:0,17,20:0:0:17,20:612,708:-107.964,-58.025,-52.9075,-50.2959,0,-44.2753	1/2:183:0,80,103:0:0:80,103:2854,3661:-531.336,-298.688,-274.606,-233.003,0,-201.997	1/1:132:0,132,0:0:0:132,0:4721,0:-425.048,-39.736,0,-425.048,-39.736,-425.048	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:123:0,64,59:0:0:64,59:2287,2025:-351.23,-164.754,-145.488,-186.826,0,-169.065	1/1:76:0,73,3:0:0:73,3:2624,108:-236.047,-21.9752,0,-227.235,-12.8031,-226.332	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	0/1:4:1,2,1:1:36:2,1:72,36:-5.5738,0,-2.33536,-2.93742,-1.73718e-08,-5.5738	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:3:0,2,1:0:0:2,1:72,36:-9.16966,-3.29724,-2.69518,-6.2322,0,-5.93117	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:58:0,29,29:0:0:29,29:1036,1036:-169.291,-84.824,-76.0942,-84.824,0,-76.0942	1/2:90:0,50,40:0:0:50,40:1788,1384:-258.613,-112.813,-97.7614,-146.151,0,-134.11	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:52:0,30,22:0:0:30,22:1061,761:-148.595,-62.1842,-53.1533,-86.7603,0,-80.1376	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/2:110:0,65,45:0:0:65,45:2298,1578:-315.92,-128.76,-109.193,-187.511,0,-173.965	1/2:4:0,3,1:0:0:3,1:106,36:-11.9251,-3.29724,-2.39415,-8.98601,0,-8.68498	1/2:13:0,7,6:0:0:7,6:252,208:-37.822,-17.2529,-15.1457,-20.9217,0,-19.1156	1/1:92:0,92,0:0:0:92,0:3312,0:-298.297,-27.6948,0,-298.297,-27.6948,-298.297	1/1:38:0,38,0:0:0:38,0:1333,0:-120.268,-11.4391,0,-120.268,-11.4391,-120.268	1/2:75:0,41,34:0:0:41,34:1464,1182:-215.79,-96.4455,-84.1033,-119.696,0,-109.461	1/1:49:0,49,0:0:0:49,0:1748,0:-157.604,-14.7505,0,-157.604,-14.7505,-157.604	1/1:31:0,30,1:0:0:30,1:1076,36:-96.7931,-9.0309,0,-93.8556,-5.73366,-93.5546	1/2:86:0,46,40:0:0:46,40:1627,1392:-245.784,-113.536,-99.6884,-132.598,0,-120.557	1/2:3:0,2,1:0:0:2,1:72,32:-8.79971,-2.89828,-2.29622,-6.23466,0,-5.93363	1/2:32:0,19,13:0:0:19,13:680,460:-93.2762,-37.822,-32.1024,-55.8096,0,-51.8962	1/1:28:0,28,0:0:0:28,0:997,0:-90.0439,-8.42884,0,-90.0439,-8.42884,-90.0439	1/2:14:0,9,5:0:0:9,5:320,180:-41.1218,-15.0469,-12.3376,-26.4331,0,-24.9279	1/2:25:0,13,12:0:0:13,12:460,428:-72.7133,-35.2464,-31.3331,-37.822,0,-34.2096	1/2:50:0,24,26:0:0:24,26:860,912:-144.711,-74.5691,-67.3444,-70.4967,0,-62.6699	1/2:10:0,2,8:0:0:2,8:72,272:-28.271,-22.3922,-21.7901,-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chr07	22059815	.	T	G	65640.3	PASS	AB=0.468282;ABP=22.8463;AC=133;AF=0.707447;AN=188;AO=2521;CIGAR=1X;DP=3735;DPB=3735;DPRA=40.1505;EPP=63.4989;EPPR=678.453;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.9433;MQMR=59.9719;NS=94;NUMALT=1;ODDS=2.1353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89904;QR=43144;RO=1212;RPL=1128;RPP=63.4989;RPPR=682.86;RPR=1393;RUN=1;SAF=0;SAP=5477.29;SAR=2521;SRF=1;SRP=2626.16;SRR=1211;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:26,11:26:913:11:392:-24.4819,0,-71.3459	0/1:14:8,6:8:288:6:216:-15.5745,0,-22.053	0/1:50:34,16:34:1196:16:571:-36.6714,0,-92.8925	0/1:68:40,28:40:1432:28:1008:-70.5663,0,-108.708	1/1:41:0,41:0:0:41:1462:-131.876,-12.3422,0	1/1:24:0,24:0:0:24:852:-76.9897,-7.22472,0	1/1:59:0,59:0:0:59:2120:-191.04,-17.7608,0	0/1:73:42,31:42:1489:31:1110:-78.2361,0,-112.327	1/1:66:0,66:0:0:66:2359:-212.522,-19.868,0	0/1:51:30,21:30:1065:21:756:-53.0147,0,-80.8072	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:29:0,29:0:0:29:1018:-91.9304,-8.72987,0	0/1:22:14,8:14:500:8:288:-19.6447,0,-38.7135	0/1:18:14,4:14:496:4:140:-7.52604,0,-39.5557	0/1:22:13,8:13:460:8:288:-19.5859,0,-35.0544	1/1:23:0,22:0:0:22:792:-71.2458,-6.62266,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:69:30,39:30:1057:39:1392:-104.808,0,-74.6679	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:102:77,25:77:2756:25:885:-49.2615,0,-217.577	1/1:60:0,60:0:0:60:2150:-193.767,-18.0618,0	0/1:57:23,34:23:815:34:1200:-91.1469,0,-56.5121	0/1:39:21,18:21:752:18:648:-46.9117,0,-56.2661	0/1:187:108,79:108:3830:79:2798:-195.767,0,-288.603	1/1:131:0,131:0:0:131:4637:-417.495,-39.4349,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:132:66,66:66:2319:66:2355:-172.472,0,-169.23	1/1:75:3,72:3:108:72:2584:-222.734,-12.5021,0	1/1:30:0,30:0:0:30:1062:-95.89,-9.0309,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:3:1,2:1:36:2:72:-5.93117,0,-2.69518	0/1:6:1,5:1:36:5:171:-13.9193,0,-1.79209	0/1:59:31,28:31:1116:28:1008:-73.2756,0,-82.9909	0/1:91:42,49:42:1488:49:1737:-129.219,0,-106.821	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:54:23,31:23:824:31:1092:-82.3321,0,-58.2277	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:114:49,65:49:1744:65:2328:-175.462,0,-122.927	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:14:7,7:7:252:7:241:-17.811,0,-18.8145	1/1:91:0,91:0:0:91:3254:-293.081,-27.3937,0	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	0/1:77:38,39:38:1353:39:1390:-102.202,0,-98.8891	1/1:48:0,48:0:0:48:1691:-152.474,-14.4494,0	1/1:31:1,30:1:36:30:1072:-93.1942,-5.73366,0	0/1:87:40,47:40:1424:47:1673:-124.038,0,-102.268	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:32:13,19:13:468:19:684:-52.2574,0,-32.8267	1/1:27:0,27:0:0:27:952:-85.9938,-8.12781,0	0/1:14:5,9:5:176:9:324:-25.2914,0,-11.9706	0/1:25:12,13:12:428:13:459:-34.1183,0,-31.3331	0/1:51:27,24:27:957:24:842:-60.7441,0,-71.0913	0/1:11:10,1:10:345:1:36:-0.286945,0,-28.0691	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:50:0,50:0:0:50:1780:-160.483,-15.0515,0	1/1:29:1,28:1:32:28:1008:-87.837,-5.53056,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.15026	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:73:0,73:0:0:73:2624:-236.406,-21.9752,0	0/1:25:11,14:11:388:14:504:-38.1723,0,-27.7316	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:52:29,23:29:1040:23:808:-57.3844,0,-78.2608	0/1:42:27,15:27:968:15:536:-35.9316,0,-74.7941	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	0/1:17:12,5:12:428:5:176:-11.0675,0,-33.7413	1/1:94:0,94:0:0:94:3346:-301.323,-28.2968,0	0/1:28:10,18:10:360:18:648:-50.223,0,-24.3155	1/1:70:0,70:0:0:70:2507:-225.882,-21.0721,0	1/1:33:0,33:0:0:33:1161:-104.795,-9.93399,0	0/1:168:83,85:83:2976:85:3043:-223.523,0,-217.499	1/1:21:0,21:0:0:21:747:-67.5528,-6.32163,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:74:46,28:46:1637:28:993:-67.4063,0,-125.341	0/1:93:40,53:40:1428:53:1886:-142.022,0,-100.822	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	0/1:19:7,12:7:252:12:424:-32.7768,0,-17.3094	0/1:17:6,11:6:216:11:387:-30.0491,0,-14.673	0/1:32:18,14:18:640:14:504:-36.0605,0,-48.2964	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:23:0,23:0:0:23:805:-72.7675,-6.92369,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0
chr07	22134705	.	A	T	37016.8	PASS	AB=0.519826;ABP=22.6419;AC=56;AF=0.301075;AN=186;AO=3002;CIGAR=1X;DP=9611;DPB=9611;DPRA=1.22316;EPP=6521.77;EPPR=14336.9;GTI=1;LEN=1;MEANALT=1.07812;MQM=32.5606;MQMR=59.5696;NS=93;NUMALT=1;ODDS=1.42901;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107360;QR=236246;RO=6601;RPL=0;RPP=6521.77;RPPR=14336.9;RPR=3002;RUN=1;SAF=3002;SAP=6521.77;SAR=0;SRF=6601;SRP=14336.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:35,21:35:1256:21:737:-34.7639,0,-96.1852	0/1:82:51,31:51:1832:31:1112:-55.5382,0,-140.468	0/1:369:154,213:154:5510:213:7612:-438.234,0,-385.216	0/1:269:123,146:123:4361:146:5228:-327.93,0,-311.673	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.055	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1237	0/0:89:89,0:89:3164:0:0:0,-26.7917,-284.979	0/1:174:83,91:83:2969:91:3260:-184.183,0,-214.974	0/0:128:128,0:128:4584:0:0:0,-38.5318,-411.869	0/1:52:24,28:24:860:28:1000:-64.632,0,-61.9961	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.447	0/0:135:135,0:135:4832:0:0:0,-40.639,-434.982	0/1:65:26,39:26:936:39:1400:-81.1388,0,-64.9916	0/1:61:29,32:29:1044:32:1148:-67.3892,0,-75.8422	0/1:71:34,37:34:1220:37:1328:-83.792,0,-88.716	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.133	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.467	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:41:18,23:18:648:23:824:-47.2724,0,-46.3078	0/1:280:144,136:144:5156:136:4856:-298.59,0,-379.788	0/0:121:121,0:121:4317:0:0:0,-36.4246,-387.664	0/1:169:59,110:59:2120:110:3944:-265.146,0,-140.192	0/0:148:147,1:147:5257:1:36:0,-41.3648,-470.021	0/1:92:50,42:50:1796:42:1493:-86.68,0,-134.218	0/1:80:46,34:46:1656:34:1219:-65.7045,0,-125.241	0/1:239:116,123:116:4157:123:4404:-278.919,0,-302.351	0/0:272:269,1:269:9602:1:36:0,-78.0442,-860.496	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.331	0/1:320:136,184:136:4888:184:6600:-425.694,0,-343.683	0/0:82:80,2:80:2876:2:68:0,-19.0285,-253.403	0/0:97:95,2:95:3381:2:72:0,-23.5723,-298.743	1/1:1:0,1:0:0:1:36:-3.05454,-0.30103,0	0/1:6:5,1:5:176:1:36:-1.24836,0,-14.3207	.:.:.:.:.:.:.:.	0/1:7:1,6:1:36:6:216:-14.3429,0,-1.49106	0/1:8:1,7:1:36:7:252:-16.1695,0,-1.19003	0/1:233:113,120:113:4030:120:4284:-270.648,0,-292.634	0/1:128:61,67:61:2188:67:2404:-143.139,0,-158.654	0/1:37:14,23:14:504:23:828:-49.0888,0,-34.56	0/1:4:1,3:1:36:3:104:-6.9065,0,-2.39415	0/1:147:83,64:83:2961:64:2296:-127.145,0,-222.323	0/1:38:18,20:18:644:20:712:-43.4293,0,-46.8499	0/1:203:103,100:103:3700:100:3576:-211.517,0,-270.61	0/1:62:30,31:30:1080:31:1116:-68.0323,0,-78.8292	0/1:75:39,36:39:1400:36:1288:-76.3464,0,-103.6	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.736	0/0:180:180,0:180:6464:0:0:0,-54.1854,-581.609	0/1:171:81,90:81:2912:90:3225:-202.636,0,-210.18	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.448	0/0:102:102,0:102:3653:0:0:0,-30.7051,-328.956	0/1:146:57,89:57:2036:89:3188:-209.707,0,-139.454	0/1:2:1,1:1:36:1:36:-2.58556,0,-2.99621	0/1:159:90,69:90:3213:69:2476:-131.433,0,-241.452	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.373	0/1:4:2,2:2:72:2:72:-4.31113,0,-5.6326	0/1:176:78,98:78:2796:98:3489:-209.86,0,-198.867	0/1:65:35,29:35:1256:29:1044:-62.8303,0,-93.7175	0/1:9:3,6:3:108:6:216:-14.8227,0,-7.3659	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5511	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.925	0/0:97:95,2:95:3416:2:72:0,-23.1434,-301.562	0/1:8:5,3:5:180:3:108:-6.09578,0,-14.1438	0/0:148:147,1:147:5257:1:36:0,-40.9552,-468.946	0/0:175:175,0:175:6249:0:0:0,-52.6802,-562.224	0/1:74:40,34:40:1436:34:1220:-70.9073,0,-107.261	0/0:117:116,1:116:4106:1:36:0,-32.0329,-366.518	0/1:166:97,69:97:3492:69:2442:-143.499,0,-264.5	0/1:186:48,138:48:1720:138:4913:-332.25,0,-99.0916	0/1:38:20,18:20:712:18:643:-35.6487,0,-52.9629	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.139	0/1:43:19,24:19:680:24:860:-55.926,0,-48.577	0/1:21:5,16:5:176:16:572:-39.3491,0,-9.86339	0/0:145:144,1:144:5118:1:36:0,-40.7466,-457.705	0/1:86:45,41:45:1620:41:1456:-79.5283,0,-120.188	0/0:131:131,0:131:4651:0:0:0,-39.4349,-418.085	0/0:194:194,0:194:6937:0:0:0,-58.3998,-624.369	0/1:143:70,73:70:2504:73:2609:-146.147,0,-182.564	0/0:76:76,0:76:2705:0:0:0,-22.8783,-242.571	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:156:155,1:155:5556:1:36:0,-43.9061,-497.06	0/1:162:80,82:80:2880:82:2932:-163.791,0,-210.624	0/1:205:101,104:101:3607:104:3728:-234.522,0,-263.079	0/1:61:37,24:37:1332:24:860:-51.3704,0,-101.808	0/1:74:46,28:46:1648:28:991:-57.3772,0,-126.325	0/1:47:27,20:27:942:20:716:-41.6623,0,-70.8608	0/1:138:70,68:70:2505:68:2423:-148.453,0,-184.06	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.613	0/0:87:87,0:87:3120:0:0:0,-26.1896,-280.992	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.757	0/1:33:14,19:14:504:19:684:-40.7026,0,-35.7641	0/1:69:41,28:41:1472:28:1000:-54.9845,0,-111.991	0/1:94:46,48:46:1652:48:1716:-106.999,0,-120.662	0/0:186:186,0:186:6645:0:0:0,-55.9916,-597.916	0/0:116:116,0:116:4168:0:0:0,-34.9195,-374.255
chr07	22134768	.	C	T	96443.9	PASS	AB=0.303864;ABP=2433.22;AC=127;AF=0.675532;AN=188;AO=5312;CIGAR=1X;DP=10558;DPB=10558;DPRA=22.7571;EPP=11537.9;EPPR=11383.7;GTI=10;LEN=1;MEANALT=1.01124;MQM=47.2959;MQMR=29.2827;NS=94;NUMALT=1;ODDS=0.60072;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190183;QR=186721;RO=5245;RPL=1;RPP=11529.2;RPPR=169.949;RPR=5311;RUN=1;SAF=1;SAP=11529.2;SAR=5311;SRF=2939;SRP=168.899;SRR=2306;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:31,11:31:1095:11:396:-22.8459,0,-61.2934	0/1:180:107,73:107:3827:73:2611:-178.609,0,-188.964	0/1:281:245,35:245:8739:35:1260:-27.3827,0,-525.874	0/1:248:202,46:202:7215:46:1648:-72.693,0,-460.196	1/1:51:0,51:0:0:51:1832:-163.096,-15.3525,0	1/1:89:0,89:0:0:89:3195:-284.729,-26.7917,0	1/1:107:0,107:0:0:107:3840:-340.733,-32.2102,0	0/1:235:163,72:163:5787:72:2588:-160.885,0,-316.187	1/1:105:0,105:0:0:105:3748:-334.773,-31.6082,0	0/1:170:115,55:115:4092:55:1976:-124.713,0,-227.793	1/1:48:0,48:0:0:48:1715:-152.011,-14.4494,0	1/1:99:0,99:0:0:99:3548:-315.616,-29.802,0	0/1:117:75,42:75:2672:42:1504:-99.2261,0,-141.012	0/1:113:66,47:66:2342:47:1684:-116.521,0,-129.327	0/1:105:76,29:76:2716:29:1044:-61.4998,0,-163.353	1/1:59:0,59:0:0:59:2120:-189.164,-17.7608,0	1/1:68:0,68:0:0:68:2429:-216.365,-20.47,0	1/1:76:0,76:0:0:76:2704:-242.395,-22.8783,0	0/1:75:40,35:40:1440:35:1252:-89.0662,0,-71.8523	0/1:248:168,80:168:5939:80:2861:-180.525,0,-376.656	1/1:148:0,148:0:0:148:5291:-470.619,-44.5524,0	0/1:167:138,29:138:4904:29:1035:-41.3619,0,-323.045	1/1:35:0,35:0:0:35:1252:-111.037,-10.5361,0	0/1:87:62,25:62:2198:25:900:-53.9783,0,-132.089	0/1:74:52,22:52:1806:22:788:-48.4876,0,-105.37	0/1:347:242,105:242:8619:105:3776:-232.111,0,-511.232	1/1:193:2,191:2:72:191:6829:-602.391,-51.2621,0	1/1:50:1,49:1:36:49:1752:-153.013,-11.4532,0	0/1:324:265,59:265:9406:59:2101:-88.7931,0,-605.554	1/1:119:6,113:6:216:113:4064:-347.055,-20.8407,0	1/1:87:2,85:2:72:85:3060:-266.583,-20.562,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.33258	0/1:4:1,3:1:36:3:108:-8.38169,0,-1.85042	1/1:3:0,3:0:0:3:108:-10.0205,-0.90309,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-15.3274	0/0:9:9,0:9:324:0:0:0,-2.70927,-22.8383	0/1:383:228,155:228:8133:155:5564:-377.528,0,-468.65	0/1:198:132,66:132:4713:66:2354:-150.484,0,-268.718	0/1:86:56,30:56:1992:30:1080:-70.7326,0,-104.319	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.17383	0/1:188:115,73:115:4079:73:2597:-174.532,0,-230.204	0/1:40:29,11:29:1026:11:396:-23.6931,0,-63.1994	0/1:220:158,62:158:5605:62:2224:-131.71,0,-335.731	0/1:120:70,50:70:2512:50:1792:-122.939,0,-139.95	0/1:126:77,49:77:2738:49:1764:-118.921,0,-151.998	1/1:49:0,49:0:0:49:1749:-156.251,-14.7505,0	1/1:114:0,114:0:0:114:4088:-365.251,-34.3174,0	0/1:242:174,68:174:6178:68:2431:-144.326,0,-371.699	1/1:75:0,75:0:0:75:2696:-239.742,-22.5773,0	1/1:93:1,92:1:36:92:3303:-291.33,-25.4371,0	0/1:213:158,55:158:5629:55:1968:-111.715,0,-345.979	0/1:4:1,3:1:36:3:108:-8.78295,0,-1.9835	0/1:183:125,58:125:4453:58:2073:-128.838,0,-241.726	1/1:36:0,36:0:0:36:1292:-115.26,-10.8371,0	0/1:5:3,2:3:99:2:72:-5.29451,0,-5.98921	0/0:153:139,14:139:4954:14:504:0,-0.670137,-311.705	0/1:48:35,13:35:1260:13:464:-27.2771,0,-80.85	0/0:6:6,0:6:216:0:0:0,-1.80618,-16.9554	1/1:11:0,11:0:0:11:396:-35.6681,-3.31133,0	1/1:50:0,50:0:0:50:1800:-160.519,-15.0515,0	1/1:108:2,106:2:72:106:3800:-327.975,-26.4548,0	0/1:5:4,1:4:144:1:36:-2.06166,0,-9.28975	1/1:139:0,139:0:0:139:4940:-438.911,-41.8432,0	1/1:139:0,139:0:0:139:4964:-440.761,-41.8432,0	0/1:130:87,43:87:3116:43:1540:-97.6019,0,-174.893	1/1:45:1,44:1:36:44:1564:-136.681,-10.3587,0	0/1:189:125,64:125:4459:64:2304:-148.61,0,-267.152	0/1:227:191,36:191:6794:36:1288:-46.1943,0,-438.805	0/1:41:26,15:26:920:15:540:-36.2613,0,-54.085	1/1:48:0,48:0:0:48:1724:-153.567,-14.4494,0	0/1:123:81,42:81:2895:42:1472:-93.9167,0,-162.469	0/1:29:24,5:24:855:5:180:-7.68965,0,-55.2132	1/1:89:1,88:1:36:88:3152:-279.164,-23.8889,0	0/1:89:63,26:63:2249:26:917:-55.3448,0,-124.856	1/1:109:1,108:1:36:108:3876:-342.356,-30.2536,0	1/1:111:0,111:0:0:111:3979:-352.342,-33.4143,0	0/1:186:136,50:136:4864:50:1796:-104.438,0,-266.753	1/1:69:0,69:0:0:69:2476:-221.916,-20.7711,0	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	1/1:87:1,86:1:36:86:3088:-271.997,-23.1351,0	0/1:179:117,62:117:4110:62:2204:-143.277,0,-229.414	0/1:265:203,62:203:7249:62:2216:-117.922,0,-445.437	0/1:151:80,71:80:2856:71:2548:-181.346,0,-151.579	0/1:91:63,28:63:2243:28:1008:-62.8361,0,-133.085	0/1:142:86,56:86:3060:56:2004:-135.748,0,-163.516	0/1:259:156,103:156:5536:103:3683:-249.41,0,-312.584	1/1:41:0,41:0:0:41:1455:-130.515,-12.3422,0	1/1:93:0,93:0:0:93:3318:-296.798,-27.9958,0	1/1:79:0,79:0:0:79:2835:-253.069,-23.7814,0	0/1:44:31,13:31:1112:13:468:-28.9212,0,-64.9367	0/1:105:67,38:67:2396:38:1330:-87.6157,0,-134.355	0/1:145:113,32:113:4039:32:1144:-58.4141,0,-241.28	1/1:57:0,57:0:0:57:2040:-181.934,-17.1587,0	1/1:125:0,125:0:0:125:4488:-399.908,-37.6288,0
chr07	22134865	.	G	C	24792.7	PASS	AB=0.51823;ABP=11.165;AC=52;AF=0.282609;AN=184;AO=1485;CIGAR=1X;DP=4754;DPB=4754;DPRA=1.22754;EPP=3218.97;EPPR=7092.87;GTI=2;LEN=1;MEANALT=1.05455;MQM=57.7825;MQMR=59.8729;NS=92;NUMALT=1;ODDS=0.812028;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52779;QR=116611;RO=3265;RPL=1485;RPP=3227.65;RPPR=7092.87;RPR=0;RUN=1;SAF=1484;SAP=3218.97;SAR=1;SRF=3265;SRP=7092.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:12,31:12:423:31:1088:-85.2473,0,-25.4608	0/1:41:21,20:21:752:20:712:-52.0488,0,-55.6636	0/1:86:49,37:49:1756:37:1318:-92.8992,0,-132.434	0/1:118:54,64:54:1928:64:2287:-170.38,0,-138.275	0/0:42:41,1:41:1455:1:36:0,-9.04669,-127.626	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.054	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.088	0/1:81:47,34:47:1683:34:1193:-83.1948,0,-127.372	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:58:27,31:27:972:31:1104:-82.1977,0,-70.3378	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:49:49,0:49:1736:0:0:0,-14.7505,-156.524	0/1:46:24,22:24:848:22:773:-55.4327,0,-62.7923	0/1:26:13,13:13:464:13:464:-34.2537,0,-34.2692	0/1:44:18,26:18:648:26:936:-71.2311,0,-45.4062	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4305	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9356	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/1:22:10,12:10:360:12:424:-31.8653,0,-26.1212	0/1:50:31,19:31:1116:19:672:-45.7038,0,-85.7002	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.361	0/1:54:25,29:25:896:29:1027:-76.4581,0,-64.7047	0/0:61:60,1:60:2133:1:36:0,-14.765,-188.639	0/1:32:19,13:19:676:13:468:-32.8065,0,-51.535	0/1:43:20,23:20:716:23:809:-60.1418,0,-51.8234	0/1:153:76,77:76:2709:77:2749:-201.243,0,-197.987	0/0:128:128,0:128:4560:0:0:0,-38.5318,-410.554	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.028	0/1:191:97,93:97:3476:93:3287:-237.445,0,-255.491	0/0:60:59,1:59:2120:1:36:0,-14.4652,-187.47	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.769	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:2,2:2:72:2:72:-5.63069,0,-5.63165	0/1:9:5,4:5:180:4:144:-10.6011,0,-13.8428	0/1:98:45,53:45:1604:53:1873:-139.313,0,-115.149	0/1:89:38,51:38:1332:51:1799:-135.321,0,-93.3685	0/1:20:11,9:11:396:9:311:-22.2946,0,-29.9621	.:.:.:.:.:.:.:.	0/1:90:47,43:47:1680:43:1544:-112.021,0,-124.365	0/1:26:14,12:14:500:12:428:-31.0128,0,-37.5078	0/1:113:48,65:48:1728:65:2316:-174.36,0,-121.789	0/1:24:14,10:14:496:10:360:-25.5144,0,-37.7495	0/1:45:18,27:18:644:27:947:-71.9366,0,-44.7438	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/1:73:31,42:31:1099:42:1491:-112.483,0,-77.2357	0/0:66:65,1:65:2328:1:36:0,-16.2701,-206.182	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	0/1:75:39,36:39:1396:36:1280:-92.926,0,-103.362	.:.:.:.:.:.:.:.	0/1:81:40,41:40:1431:41:1459:-107.092,0,-104.386	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.225	1/1:17:0,17:0:0:17:608:-54.3415,-5.11751,0	0/1:82:41,40:41:1476:40:1440:-104.897,0,-108.189	0/1:45:27,18:27:947:18:648:-45.0952,0,-71.7249	0/1:5:2,3:2:72:3:100:-7.79593,0,-5.33157	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:6:3,3:3:108:3:99:-7.42936,0,-8.26899	0/0:119:119,0:119:4264:0:0:0,-35.8226,-383.832	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.895	0/1:35:16,19:16:576:19:660:-49.1495,0,-41.6389	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.32	0/1:53:27,26:27:964:26:936:-68.5945,0,-71.1222	0/1:121:34,86:34:1224:86:3069:-239.362,0,-73.9271	0/1:9:4,5:4:135:5:180:-13.6975,0,-9.77324	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:28:12,16:12:417:16:576:-43.475,0,-29.4314	0/1:11:3,8:3:108:8:288:-22.9521,0,-6.76342	0/0:88:87,0:87:3072:0:0:0,-26.1896,-276.19	0/1:43:19,24:19:669:24:849:-63.7583,0,-47.5897	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:83:43,40:43:1520:40:1435:-104.301,0,-112.105	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.891	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.136	0/1:76:36,40:36:1296:40:1427:-105.486,0,-94.0647	0/1:104:58,46:58:2068:46:1627:-115.011,0,-155.081	0/1:36:17,19:17:600:19:680:-50.6843,0,-43.492	0/1:35:20,15:20:712:15:531:-37.4615,0,-53.8702	0/1:37:23,14:23:820:14:496:-33.7839,0,-62.9844	0/1:85:36,49:36:1284:49:1738:-130.989,0,-90.2697	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.719	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:18:9,9:9:320:9:320:-23.7114,0,-23.7238	0/1:51:23,28:23:824:28:994:-74.1574,0,-59.1271	0/1:27:10,17:10:360:17:599:-46.1044,0,-24.6165	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512
chr07	22196551	.	CAAC	TAAC,TAAT	119243	PASS	AB=0.555774,0.441609;ABP=85.6079,93.5409;AC=135,53;AF=0.718085,0.281915;AN=188;AO=4211,1354;CIGAR=1X3M,1X2M1X;DP=5588;DPB=5588.5;DPRA=0,1.0186;EPP=8931.22,2874.11;EPPR=13.8677;GTI=2;LEN=1,4;MEANALT=1.75532,2.12281;MQM=59.6607,59.9424;MQMR=60;NS=94;NUMALT=2;ODDS=1.66985;PAIRED=0,0;PAIREDR=0;PAO=0.666667,0.666667;PQA=24,24;PQR=0;PRO=0;QA=150211,47365;QR=167;RO=5;RPL=4187,1346;RPP=8939.81,2874.11;RPPR=13.8677;RPR=24,8;RUN=1,1;SAF=4210,1354;SAP=9138.4,2943.18;SAR=1,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,27,19:0:0:27,19:968,644:-131.482,-52.5579,-44.4301,-79.2713,0,-73.5517	1/2:21:0,17,4:0:0:17,4:612,144:-62.0456,-12.1095,-6.99199,-50.2959,0,-49.0918	1/2:74:0,49,25:0:0:49,25:1747,876:-214.034,-71.6311,-56.8806,-142.755,0,-135.229	1/2:95:0,58,36:0:0:58,36:2060,1252:-269.638,-101.784,-84.3243,-167.845,0,-157.008	1/1:47:0,47,0:0:0:47,0:1676,0:-151.042,-14.1484,0,-151.042,-14.1484,-151.042	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:77:0,77,0:0:0:77,0:2746,0:-247.33,-23.1793,0,-247.33,-23.1793,-247.33	1/2:68:0,44,24:0:0:44,24:1580,851:-198.532,-69.6857,-56.4403,-129.202,0,-121.978	1/1:70:0,70,0:0:0:70,0:2503,0:-225.497,-21.0721,0,-225.497,-21.0721,-225.497	1/2:54:0,34,19:0:0:34,19:1220,679:-155.032,-55.515,-45.28,-99.6681,0,-93.9485	1/1:34:0,34,0:0:0:34,0:1224,0:-110.462,-10.235,0,-110.462,-10.235,-110.462	1/1:79:0,79,0:0:0:79,0:2761,0:-248.711,-23.7814,0,-248.711,-23.7814,-248.711	1/2:62:0,29,32:0:0:29,32:1031,1134:-176.534,-92.522,-83.7922,-84.1498,0,-74.5168	1/2:42:0,27,15:0:0:27,15:963,535:-122.471,-43.969,-35.8412,-78.8581,0,-74.3427	1/2:36:0,21,15:0:0:21,15:739,532:-103.853,-43.6975,-37.3759,-60.5084,0,-55.9929	1/1:47:0,47,0:0:0:47,0:1644,0:-148.177,-14.1484,0,-148.177,-14.1484,-148.177	1/1:9:0,9,0:0:0:9,0:316,0:-28.7789,-2.70927,0,-28.7789,-2.70927,-28.7789	1/1:25:0,25,0:0:0:25,0:896,0:-80.9522,-7.52575,0,-80.9522,-7.52575,-80.9522	1/2:20:0,13,7:0:0:13,7:431,237:-54.4072,-19.5533,-15.6399,-35.1899,0,-33.0827	1/2:79:1,43,35:1:36:43,35:1535,1235:-222.461,-97.6207,-87.614,-122.198,0,-114.6	1/1:90:0,89,0:0:0:89,0:3182,0:-286.208,-26.7917,0,-286.208,-26.7917,-286.208	1/2:87:0,32,55:0:0:32,55:1144,1915:-249.344,-156.069,-146.436,-93.6291,0,-77.0725	1/1:105:0,105,0:0:0:105,0:3763,0:-338.819,-31.6082,0,-338.819,-31.6082,-338.819	1/2:61:0,39,22:0:0:39,22:1396,748:-174.865,-61.0121,-49.272,-114.199,0,-107.576	1/2:58:0,25,33:0:0:25,33:892,1147:-166.318,-93.6012,-86.0755,-73.0693,0,-63.1353	1/2:149:0,81,68:0:0:81,68:2888,2375:-428.752,-193.469,-169.085,-235.635,0,-215.165	1/1:128:0,128,0:0:0:128,0:4565,0:-410.904,-38.5318,0,-410.904,-38.5318,-410.904	1/1:19:0,19,0:0:0:19,0:676,0:-61.168,-5.71957,0,-61.168,-5.71957,-61.168	1/2:165:0,99,66:0:0:99,66:3529,2292:-474.292,-186.674,-156.872,-287.969,0,-268.101	1/1:68:1,66,1:1:30:66,1:2368,36:-210.333,-17.4993,0,-207.697,-16.9006,-209.793	1/1:100:0,100,0:0:0:100,0:3554,0:-320.055,-30.103,0,-320.055,-30.103,-320.055	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:17:0,17,0:0:0:17,0:608,0:-55.0244,-5.11751,0,-55.0244,-5.11751,-55.0244	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:8:0,4,4:0:0:4,4:144,136:-23.1307,-11.3711,-10.167,-12.1095,0,-10.9054	1/2:14:0,4,10:0:0:4,10:144,351:-40.6689,-28.9166,-27.7125,-12.1095,0,-9.0992	1/2:135:0,78,57:0:0:78,57:2792,2031:-393.585,-165.905,-142.425,-228.037,0,-210.879	1/2:78:0,48,30:0:0:48,30:1701,1048:-224.167,-85.5985,-71.1491,-138.92,0,-129.889	1/2:26:0,13,13:0:0:13,13:460,457:-75.0118,-37.5506,-33.6372,-37.8138,0,-33.9004	1/1:2:0,2,0:0:0:2,0:72,0:-6.82813,-0.60206,0,-6.82813,-0.60206,-6.82813	1/2:99:0,58,41:0:0:58,41:2061,1452:-286.567,-118.63,-101.17,-168.292,0,-155.949	1/2:23:0,14,9:0:0:14,9:500,314:-66.6573,-25.8875,-21.6731,-41.1218,0,-38.4125	1/2:92:0,52,40:0:0:52,40:1856,1405:-265.987,-114.689,-99.0353,-151.652,0,-139.611	1/2:25:0,17,8:0:0:17,8:612,287:-73.7028,-23.7682,-18.6507,-50.2936,0,-47.8853	1/2:33:0,17,16:0:0:17,16:604,545:-93.7807,-44.5551,-39.4376,-49.5731,0,-44.7566	1/1:114:0,114,0:0:0:114,0:4074,0:-366.84,-34.3174,0,-366.84,-34.3174,-366.84	1/1:77:0,76,0:0:0:76,0:2724,0:-245.098,-22.8783,0,-245.098,-22.8783,-245.098	1/2:86:0,50,36:0:0:50,36:1796,1256:-248.958,-102.452,-87.4009,-146.807,0,-135.97	1/1:70:0,70,0:0:0:70,0:2512,0:-226.327,-21.0721,0,-226.327,-21.0721,-226.327	1/1:44:0,42,0:0:0:42,0:1499,0:-134.932,-12.6433,0,-134.932,-12.6433,-134.932	1/2:125:0,81,44:0:0:81,44:2888,1547:-361.679,-126.275,-101.892,-235.757,0,-222.512	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	1/2:98:0,57,41:0:0:57,41:2029,1440:-282.861,-117.546,-100.387,-165.667,0,-153.325	1/1:76:0,76,0:0:0:76,0:2715,0:-244.591,-22.8783,0,-244.591,-22.8783,-244.591	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:63:0,46,17:0:0:46,17:1652,600:-183.976,-49.2118,-35.3644,-135.118,0,-130.001	1/2:25:0,14,11:0:0:14,11:500,373:-71.3483,-30.5851,-26.3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chr07	22196694	.	GGT	GGG,AGG	145696	PASS	AB=0.562114,0.433593;ABP=127.909,145.77;AC=133,55;AF=0.707447,0.292553;AN=188;AO=5471,1632;CIGAR=2M1X,1X1M1X;DP=7141;DPB=7141;DPRA=25.5842,0.901034;EPP=11883.1,3546.85;EPPR=13.8677;GTI=6;LEN=1,3;MEANALT=1.97849,2.27869;MQM=49.5659,59.9161;MQMR=55;NS=94;NUMALT=2;ODDS=0.0396272;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=194528,56611;QR=159;RO=5;RPL=0,0;RPP=11883.1,3546.85;RPPR=13.8677;RPR=5471,1632;RUN=1,1;SAF=0,0;SAP=11883.1,3546.85;SAR=5471,1632;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:19:0,6,13:0:0:6,13:216,418:-50.2828,-34.0157,-32.2095,-16.5976,0,-12.6842	1/2:141:0,72,69:0:0:72,69:2588,2372:-385.053,-192.963,-171.289,-192.427,0,-171.655	1/2:102:0,61,41:0:0:61,41:2184,1448:-279.473,-118.273,-99.9099,-161.543,0,-149.201	1/2:127:0,61,66:0:0:61,66:2167,2322:-365.648,-189.373,-171.01,-176.628,0,-156.76	1/1:41:0,40,0:0:0:40,0:1414,0:-125.722,-12.0412,0,-125.722,-12.0412,-125.722	1/1:49:0,48,1:0:0:48,1:1720,36:-143.087,-14.4494,0,-140.149,-11.1522,-139.848	1/1:85:0,85,0:0:0:85,0:3020,0:-271.452,-25.5876,0,-271.452,-25.5876,-271.452	1/2:101:0,55,46:0:0:55,46:1958,1637:-281.481,-133.772,-117.215,-148.054,0,-134.207	1/1:62:0,62,0:0:0:62,0:2214,0:-184.699,-18.6639,0,-184.699,-18.6639,-184.699	1/2:87:0,43,44:0:0:43,44:1532,1553:-251.345,-126.817,-113.872,-124.882,0,-111.637	1/1:25:0,25,0:0:0:25,0:885,0:-79.9101,-7.52575,0,-79.9101,-7.52575,-79.9101	1/1:24:0,24,0:0:0:24,0:842,0:-70.0692,-7.22472,0,-70.0692,-7.22472,-70.0692	1/2:31:0,17,14:0:0:17,14:612,483:-84.6916,-39.5826,-34.4651,-45.4463,0,-41.2319	1/2:33:0,19,14:0:0:19,14:684,494:-96.0982,-40.579,-34.8594,-55.8743,0,-51.6598	1/2:20:0,13,7:0:0:13,7:447,245:-56.5292,-20.2837,-16.3703,-36.5931,0,-34.4859	1/1:23:0,23,0:0:0:23,0:803,0:-72.1181,-6.92369,0,-72.1181,-6.92369,-72.1181	1/1:43:0,43,0:0:0:43,0:1513,0:-123.693,-12.9443,0,-123.693,-12.9443,-123.693	1/1:31:0,30,1:0:0:30,1:1045,36:-87.1817,-9.0309,0,-84.2431,-5.73366,-83.942	1/2:12:0,8,3:0:0:8,3:284,97:-29.2779,-7.82681,-5.41857,-21.4552,0,-20.5522	1/2:75:0,54,20:0:0:54,20:1936,681:-212.991,-55.235,-38.9794,-157.752,0,-151.731	1/1:103:0,102,0:0:0:102,0:3603,0:-321.157,-30.7051,0,-321.157,-30.7051,-321.157	1/2:49:0,24,25:0:0:24,25:860,872:-141.228,-71.2697,-64.045,-70.3117,0,-62.786	1/1:130:0,129,0:0:0:129,0:4550,0:-408.245,-38.8329,0,-408.245,-38.8329,-408.245	1/2:113:0,88,25:0:0:88,25:3156,885:-328.388,-72.4435,-45.9528,-256.299,0,-248.773	1/2:23:0,17,6:0:0:17,6:604,211:-66.5443,-17.5271,-12.4096,-49.3693,0,-47.5631	1/2:277:0,163,112:0:0:163,112:5817,3830:-782.294,-310.796,-261.728,-471.492,0,-437.777	1/1:147:1,146,0:1:36:146,0:5193,0:-461.588,-40.6531,0,-461.89,-43.9504,-464.827	1/1:16:0,16,0:0:0:16,0:576,0:-51.892,-4.81648,0,-51.892,-4.81648,-51.892	1/2:104:0,56,48:0:0:56,48:1973,1676:-296.728,-136.674,-119.816,-160.404,0,-145.954	1/1:187:0,184,2:0:0:184,2:6556,72:-586.349,-55.3895,0,-580.474,-49.4144,-579.872	1/1:157:0,157,0:0:0:157,0:5618,0:-504.901,-47.2617,0,-504.901,-47.2617,-504.901	1/2:18:0,11,7:0:0:11,7:396,236:-51.6682,-19.4624,-16.151,-32.5512,0,-30.444	1/1:6:0,6,0:0:0:6,0:216,0:-19.6301,-1.80618,0,-19.6301,-1.80618,-19.6301	1/1:180:0,179,0:0:0:179,0:6341,0:-528.816,-53.8844,0,-528.816,-53.8844,-528.816	1/2:5:0,4,1:0:0:4,1:144,36:-14.1191,-3.29724,-2.09312,-11.1766,0,-10.8756	2/2:3:0,0,3:0:0:0,3:0,106:-9.8891,-9.8891,-9.8891,-0.90309,-0.90309,0	1/2:104:0,47,57:0:0:47,57:1680,1953:-295.716,-158.881,-144.733,-137.186,0,-120.027	1/2:152:0,81,70:0:0:81,70:2879,2408:-427.642,-195.544,-171.161,-232.086,0,-211.014	1/2:32:0,15,17:0:0:15,17:540,558:-86.194,-45.4119,-40.8965,-41.1141,0,-35.9966	1/2:7:0,5,2:0:0:5,2:180,64:-20.1683,-5.47604,-3.97089,-15.0234,0,-14.4214	1/2:121:0,68,52:0:0:68,52:2394,1800:-340.35,-146.292,-125.822,-194.075,0,-178.421	1/2:19:0,9,10:0:0:9,10:324,345:-54.7089,-28.372,-25.6627,-26.689,0,-23.6787	1/2:91:0,48,43:0:0:48,43:1711,1450:-255.763,-117.35,-102.9,-138.757,0,-125.813	1/2:51:0,35,16:0:0:35,16:1228,550:-144.791,-45.0076,-34.4715,-100.129,0,-95.3126	1/2:33:0,19,14:0:0:19,14:652,494:-93.3767,-40.5794,-34.8598,-53.1456,0,-48.9312	1/1:135:1,134,0:1:36:134,0:4808,0:-428.135,-37.0408,0,-428.436,-40.338,-431.373	1/1:97:0,95,0:0:0:95,0:3391,0:-281.249,-28.5979,0,-281.249,-28.5979,-281.249	1/2:143:0,71,72:0:0:71,72:2529,2522:-411.509,-205.558,-184.185,-206.305,0,-184.631	1/1:92:0,91,0:0:0:91,0:3223,0:-288.784,-27.3937,0,-288.784,-27.3937,-288.784	1/1:119:0,117,1:0:0:117,1:4165,36:-374.228,-35.2205,0,-371.29,-32.2783,-370.989	1/2:185:0,129,56:0:0:129,56:4604,1988:-536.559,-162.334,-123.502,-374.58,0,-357.722	1/2:13:0,9,4:0:0:9,4:320,124:-36.3527,-10.2634,-7.55409,-26.4132,0,-25.2091	1/2:108:0,61,45:0:0:61,45:2153,1605:-290.623,-130.901,-112.538,-159.772,0,-146.225	1/1:52:1,51,0:1:33:51,0:1800,0:-158.551,-12.3544,0,-158.852,-15.3525,-161.52	1/2:81:0,73,8:0:0:73,8:2599,288:-217.317,-23.8576,-1.88242,-193.816,0,-191.408	1/2:90:0,51,39:0:0:51,39:1832,1356:-259.534,-110.594,-95.2418,-149.292,0,-137.552	1/2:27:0,11,16:0:0:11,16:392,5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chr07	22213725	.	C	G	39268.2	PASS	AB=0.57671;ABP=85.9638;AC=133;AF=0.707447;AN=188;AO=2240;CIGAR=1X;DP=2945;DPB=2945;DPRA=5.79842;EPP=4867.11;EPPR=1533.9;GTI=3;LEN=1;MEANALT=1;MQM=36.6455;MQMR=36.8667;NS=94;NUMALT=1;ODDS=0.369518;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78061;QR=25081;RO=705;RPL=0;RPP=4867.11;RPPR=1533.9;RPR=2240;RUN=1;SAF=0;SAP=4867.11;SAR=2240;SRF=0;SRP=1533.9;SRR=705;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:9,7:9:324:7:248:-16.6037,0,-22.9618	0/1:26:7,19:7:252:19:667:-49.2717,0,-13.8539	0/1:61:20,41:20:720:41:1432:-103.054,0,-42.9331	0/1:39:13,26:13:468:26:900:-63.0265,0,-27.7444	1/1:9:0,9:0:0:9:311:-26.5702,-2.70927,0	1/1:11:0,11:0:0:11:392:-33.617,-3.31133,0	1/1:34:0,34:0:0:34:1211:-101.496,-10.235,0	0/1:27:13,14:13:468:14:495:-34.2409,0,-31.8459	1/1:33:0,33:0:0:33:1172:-98.4245,-9.93399,0	0/1:30:14,16:14:500:16:554:-37.404,0,-32.4268	1/1:31:0,31:0:0:31:1068:-90.4976,-9.33193,0	1/1:42:0,42:0:0:42:1464:-123.727,-12.6433,0	0/1:34:22,12:22:779:12:406:-24.863,0,-56.0298	0/1:32:16,16:16:572:16:529:-35.7977,0,-38.6656	0/1:32:11,21:11:396:21:743:-52.9912,0,-23.8285	1/1:33:0,33:0:0:33:1163:-98.1357,-9.93399,0	1/1:23:0,23:0:0:23:796:-66.0812,-6.92369,0	1/1:11:0,11:0:0:11:370:-31.6759,-3.31133,0	0/1:6:2,4:2:72:4:144:-10.7279,0,-4.63026	0/1:58:17,41:17:604:41:1416:-100.895,0,-33.4464	1/1:35:1,34:1:36:34:1187:-94.9727,-7.1899,0	0/1:36:25,11:25:896:11:392:-21.5003,0,-63.5425	1/1:37:0,37:0:0:37:1324:-111.139,-11.1381,0	0/1:19:3,16:3:108:16:529:-38.6406,0,-3.64964	0/1:15:10,5:10:360:5:180:-10.915,0,-25.9722	0/1:81:25,56:25:896:56:1907:-133.938,0,-50.0762	1/1:80:0,80:0:0:80:2812:-236.65,-24.0824,0	1/1:12:0,12:0:0:12:405:-34.6101,-3.61236,0	0/1:75:23,52:23:807:52:1803:-125.622,0,-43.8684	1/1:39:0,39:0:0:39:1366:-112.92,-11.7402,0	0/1:30:4,26:4:144:26:921:-67.8309,0,-3.34984	1/1:1:0,1:0:0:1:36:-3.34615,-0.30103,0	1/1:18:0,18:0:0:18:621:-52.683,-5.41854,0	1/1:7:0,7:0:0:7:243:-21.0217,-2.10721,0	0/1:7:6,1:6:212:1:36:-1.28039,0,-16.2635	0/1:16:12,4:12:432:4:144:-7.71764,0,-31.3554	0/1:85:45,40:45:1581:40:1391:-89.7227,0,-105.98	0/1:59:19,40:19:680:40:1406:-97.8491,0,-39.5902	0/1:27:20,7:20:720:7:252:-12.795,0,-52.4376	1/1:3:0,3:0:0:3:108:-9.36921,-0.90309,0	0/1:30:16,14:16:567:14:488:-31.7045,0,-38.106	0/1:16:6,10:6:212:10:360:-25.6335,0,-13.344	0/1:23:9,14:9:324:14:491:-33.948,0,-20.5147	0/1:13:2,11:2:72:11:388:-29.0655,0,-2.44429	0/1:30:15,15:15:540:15:540:-36.4767,0,-36.4767	1/1:24:0,24:0:0:24:864:-70.8365,-7.22472,0	1/1:15:0,15:0:0:15:521:-43.0352,-4.51545,0	0/1:37:8,29:8:284:29:999:-73.0989,0,-13.0466	1/1:28:0,28:0:0:28:958:-80.3843,-8.42884,0	1/1:37:0,37:0:0:37:1288:-108.015,-11.1381,0	0/1:37:16,21:16:572:21:739:-49.7596,0,-36.5189	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.1481	0/1:41:14,27:14:504:27:945:-68.3716,0,-30.6803	1/1:26:0,26:0:0:26:900:-74.9605,-7.82678,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.3898	0/1:42:13,29:13:460:29:983:-70.2576,0,-26.3594	0/1:4:3,1:3:108:1:36:-2.14203,0,-8.16509	0/1:8:5,3:5:176:3:104:-6.60084,0,-12.5664	1/1:12:0,12:0:0:12:432:-35.9542,-3.61236,0	1/1:25:0,25:0:0:25:865:-73.4015,-7.52575,0	1/1:77:1,76:1:36:76:2708:-222.908,-19.8332,0	0/1:4:2,2:2:68:2:72:-5.15356,0,-4.90142	1/1:93:0,93:0:0:93:3214:-264.641,-27.9958,0	1/1:59:4,55:4:144:55:1928:-148.962,-5.38003,0	0/1:22:6,16:6:216:16:559:-40.8675,0,-11.7811	1/1:17:0,17:0:0:17:590:-50.0699,-5.11751,0	0/1:46:24,22:24:852:22:771:-48.4612,0,-58.0441	0/1:38:12,26:12:432:26:887:-62.5366,0,-24.2352	0/1:16:8,8:8:288:8:284:-19.3682,0,-19.6104	1/1:27:0,27:0:0:27:950:-80.8588,-8.12781,0	0/1:37:14,23:14:500:23:815:-56.6245,0,-30.6181	0/1:11:7,4:7:248:4:144:-9.10776,0,-17.2584	1/1:51:0,51:0:0:51:1798:-152.497,-15.3525,0	0/1:25:8,17:8:284:17:579:-42.1634,0,-16.9438	1/1:55:0,55:0:0:55:1923:-160.447,-16.5567,0	1/1:70:0,70:0:0:70:2410:-203.764,-21.0721,0	0/1:23:9,14:9:324:14:473:-33.894,0,-20.8546	1/1:15:0,15:0:0:15:536:-45.8131,-4.51545,0	1/1:15:0,15:0:0:15:536:-45.8131,-4.51545,0	1/1:32:1,31:1:36:31:1081:-87.28,-6.28681,0	0/1:18:6,12:6:212:12:428:-31.2475,0,-12.1923	0/1:54:23,31:23:824:31:1100:-75.5931,0,-53.0616	0/1:38:18,20:18:605:20:700:-47.1294,0,-40.3242	0/1:26:10,16:10:341:16:535:-37.8263,0,-21.2379	0/1:11:5,6:5:176:6:190:-13.0058,0,-11.8368	0/1:38:20,18:20:708:18:618:-40.3783,0,-48.4055	1/1:11:0,11:0:0:11:396:-33.4352,-3.31133,0	1/1:31:0,31:0:0:31:1058:-88.5379,-9.33193,0	1/1:29:0,29:0:0:29:1000:-84.726,-8.72987,0	0/1:20:12,8:12:428:8:284:-18.1641,0,-30.3097	0/1:81:46,35:46:1630:35:1213:-76.9336,0,-112.637	0/1:23:14,9:14:491:9:320:-19.4718,0,-34.708	1/1:67:0,67:0:0:67:2262:-189.636,-20.169,0	1/1:36:0,36:0:0:36:1254:-103.094,-10.8371,0
chr07	22213764	.	A	G	9155.47	PASS	AB=0.420083;ABP=96.3733;AC=54;AF=0.287234;AN=188;AO=720;CIGAR=1X;DP=3063;DPB=3063;DPRA=1.05901;EPP=1566.47;EPPR=5090.77;GTI=4;LEN=1;MEANALT=1;MQM=36.8764;MQMR=37.1963;NS=94;NUMALT=1;ODDS=1.45256;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25761;QR=84186;RO=2343;RPL=720;RPP=1566.47;RPPR=5090.77;RPR=0;RUN=1;SAF=0;SAP=1566.47;SAR=720;SRF=0;SRP=5090.77;SRR=2343;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:8,9:8:288:9:324:-22.6608,0,-19.8042	0/1:27:20,7:20:720:7:252:-13.5528,0,-53.3784	0/1:60:41,19:41:1476:19:680:-39.964,0,-106.594	0/1:42:29,13:29:1044:13:468:-26.8413,0,-72.7132	0/0:10:10,0:10:360:0:0:0,-3.0103,-30.6341	0/0:13:13,0:13:468:0:0:0,-3.91339,-40.1649	0/0:35:35,0:35:1256:0:0:0,-10.536,-104.926	0/1:28:15,13:15:536:13:468:-31.5448,0,-36.6327	0/0:34:34,0:34:1224:0:0:0,-10.235,-102.693	0/1:31:17,14:17:604:14:489:-31.8833,0,-40.9214	0/0:33:33,0:33:1184:0:0:0,-9.93399,-99.5826	0/0:42:42,0:42:1512:0:0:0,-12.6433,-127.09	0/1:37:13,24:13:468:24:853:-61.1026,0,-29.0268	0/1:33:17,16:17:608:16:572:-38.3822,0,-41.388	0/1:32:21,11:21:756:11:396:-23.8285,0,-53.8534	0/0:34:34,0:34:1224:0:0:0,-10.235,-102.764	0/0:25:25,0:25:900:0:0:0,-7.52575,-73.5625	0/0:11:11,0:11:396:0:0:0,-3.31133,-33.0419	0/1:6:4,2:4:144:2:72:-4.63026,0,-10.7279	0/1:61:44,17:44:1580:17:608:-32.7838,0,-113.413	0/0:38:37,1:37:1332:1:36:0,-8.09299,-106.572	0/1:36:11,25:11:396:25:892:-63.3214,0,-21.6416	0/0:37:37,0:37:1328:0:0:0,-11.1381,-111.379	0/1:19:16,3:16:576:3:108:-3.64964,0,-42.0403	0/1:16:6,10:6:212:10:360:-25.6712,0,-13.4022	0/1:83:58,25:58:2084:25:900:-49.6951,0,-146.33	0/0:87:87,0:87:3128:0:0:0,-26.1896,-262.784	0/0:13:13,0:13:468:0:0:0,-3.91339,-39.5222	0/1:78:55,23:55:1980:23:828:-44.2168,0,-138.295	0/0:39:39,0:39:1400:0:0:0,-11.7402,-115.119	0/1:31:27,4:27:968:4:144:-3.04881,0,-71.4376	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.34615	0/0:18:18,0:18:648:0:0:0,-5.41854,-54.5422	0/0:7:7,0:7:252:0:0:0,-2.10721,-21.6806	0/1:6:1,5:1:36:5:180:-13.7768,0,-1.58142	0/1:16:5,11:5:180:11:388:-28.1508,0,-10.7665	0/1:89:42,47:42:1512:47:1684:-112.731,0,-97.8778	0/1:58:39,19:39:1404:19:684:-40.1315,0,-97.3	0/1:28:7,21:7:252:21:750:-55.0916,0,-12.494	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.36921	0/1:32:15,17:15:536:17:608:-40.8807,0,-34.8368	0/1:17:10,7:10:360:7:252:-16.2978,0,-25.3324	0/1:23:13,10:13:464:10:360:-22.7261,0,-32.3576	0/1:13:11,2:11:396:2:72:-2.44429,0,-29.5481	0/1:33:18,15:18:648:15:540:-35.5736,0,-45.0648	0/0:26:26,0:26:928:0:0:0,-7.82678,-76.7382	0/0:17:17,0:17:612:0:0:0,-5.11751,-50.101	0/1:38:30,8:30:1076:8:288:-12.9877,0,-78.456	0/0:31:31,0:31:1112:0:0:0,-9.33193,-92.8567	0/0:39:39,0:39:1404:0:0:0,-11.7402,-116.462	0/1:41:24,17:24:864:17:608:-37.9416,0,-59.0354	0/1:6:1,5:1:36:5:180:-13.5861,0,-1.79209	0/1:44:30,14:30:1076:14:504:-29.7772,0,-78.4916	0/0:29:29,0:29:1044:0:0:0,-8.72987,-86.6275	1/1:6:0,6:0:0:6:216:-18.3898,-1.80618,0	0/1:43:30,13:30:1071:13:468:-26.5402,0,-76.6611	0/1:4:1,3:1:36:3:108:-8.16509,0,-2.14203	0/1:8:3,5:3:108:5:180:-12.8106,0,-6.82903	0/0:13:13,0:13:464:0:0:0,-3.91339,-38.7014	0/0:26:26,0:26:936:0:0:0,-7.82678,-78.7843	0/0:81:80,1:80:2876:1:36:0,-21.0373,-237.299	0/1:4:2,2:2:72:2:68:-4.90142,0,-5.15356	0/0:97:97,0:97:3475:0:0:0,-29.1999,-284.871	0/0:60:56,4:56:2012:4:144:0,-5.68106,-155.351	0/1:24:16,8:16:576:8:288:-16.8354,0,-41.3695	0/0:19:19,0:19:684:0:0:0,-5.71957,-57.7802	0/1:50:23,27:23:824:27:968:-66.5821,0,-51.57	0/1:38:27,11:27:972:11:396:-21.223,0,-68.987	0/1:18:8,10:8:288:10:360:-24.8569,0,-19.0083	0/0:30:30,0:30:1076:0:0:0,-9.0309,-91.9762	0/1:38:23,15:23:828:15:540:-33.4276,0,-57.1328	0/1:10:3,7:3:108:7:248:-17.3585,0,-6.3976	0/0:55:55,0:55:1972:0:0:0,-16.5566,-166.764	0/1:25:17,8:17:612:8:284:-16.9438,0,-44.6433	0/0:58:58,0:58:2088:0:0:0,-17.4597,-173.554	0/0:71:71,0:71:2552:0:0:0,-21.3731,-214.179	0/1:23:14,9:14:504:9:324:-20.8546,0,-36.2032	0/0:15:15,0:15:540:0:0:0,-4.51545,-46.0714	0/0:15:15,0:15:540:0:0:0,-4.51545,-46.0714	0/0:31:30,1:30:1080:1:36:0,-5.98578,-86.2513	0/1:18:12,6:12:428:6:205:-12.1674,0,-31.2475	0/1:56:33,23:33:1188:23:820:-52.2384,0,-81.6432	0/1:39:21,18:21:756:18:640:-42.056,0,-51.2692	0/1:26:16,10:16:576:10:356:-22.3816,0,-40.6923	0/1:11:6,5:6:216:5:176:-11.8368,0,-14.2865	0/1:40:18,22:18:648:22:788:-54.5347,0,-41.7423	0/0:11:11,0:11:396:0:0:0,-3.31133,-33.4352	0/0:32:32,0:32:1152:0:0:0,-9.63296,-95.8379	0/0:31:31,0:31:1116:0:0:0,-9.33193,-94.2769	0/1:21:9,12:9:324:12:432:-30.2498,0,-21.3465	0/1:83:37,46:37:1324:46:1628:-111.615,0,-85.0813	0/1:23:9,14:9:324:14:504:-35.5724,0,-19.7136	0/0:71:71,0:71:2544:0:0:0,-21.3731,-210.863	0/0:36:36,0:36:1296:0:0:0,-10.8371,-105.575
chr07	22234391	.	C	G	80773.4	PASS	AB=0.493617;ABP=5.67151;AC=53;AF=0.284946;AN=186;AO=3737;CIGAR=1X;DP=12855;DPB=12855;DPRA=1.29309;EPP=8117.8;EPPR=19774.3;GTI=1;LEN=1;MEANALT=1.08197;MQM=59.7907;MQMR=59.9249;NS=93;NUMALT=1;ODDS=0.784259;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129206;QR=318463;RO=9105;RPL=2110;RPP=138.568;RPPR=337.907;RPR=1627;RUN=1;SAF=2110;SAP=138.568;SAR=1627;SRF=3960;SRP=337.907;SRR=5145;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:36,37:36:1254:37:1282:-93.6954,0,-91.1854	0/1:145:88,57:88:3107:57:1929:-130.231,0,-236.21	0/1:167:100,67:100:3541:67:2269:-152.829,0,-268.628	0/1:233:119,114:119:4213:114:3910:-281.882,0,-309.2	0/0:70:70,0:70:2469:0:0:0,-21.0721,-222.464	0/0:82:82,0:82:2877:0:0:0,-24.6845,-259.169	0/0:206:205,1:205:7179:1:23:0,-59.7123,-643.877	0/1:130:61,69:61:2171:69:2391:-176.297,0,-156.522	0/0:87:86,0:86:3017:0:0:0,-25.8886,-271.401	0/1:171:89,82:89:3114:82:2832:-203.555,0,-229.012	0/0:126:126,0:126:4324:0:0:0,-37.9298,-389.347	0/0:174:174,0:174:6004:0:0:0,-52.3792,-540.266	0/1:150:78,72:78:2693:72:2548:-184.415,0,-196.494	0/1:173:81,92:81:2800:92:3210:-237.031,0,-200.103	0/1:180:97,82:97:3369:82:2835:-201.144,0,-249.186	0/0:137:136,0:136:4685:0:0:0,-40.9401,-420.313	0/0:118:118,0:118:4113:0:0:0,-35.5215,-370.362	0/0:90:90,0:90:3131:0:0:0,-27.0927,-282.02	0/1:68:39,29:39:1371:29:1027:-72.2721,0,-103.218	0/1:177:105,72:105:3688:72:2472:-169.372,0,-278.844	0/0:126:126,0:126:4380:0:0:0,-37.9298,-394.38	0/1:96:46,50:46:1608:50:1764:-130.145,0,-116.108	0/0:119:119,0:119:4188:0:0:0,-35.8226,-377.02	0/1:114:74,40:74:2620:40:1408:-92.6998,0,-201.732	0/1:171:93,78:93:3259:78:2687:-190.548,0,-241.74	0/1:275:171,104:171:6023:104:3666:-247.361,0,-459.395	0/0:304:301,0:301:10571:0:0:0,-90.61,-950.753	0/0:84:84,0:84:2906:0:0:0,-25.2865,-261.778	0/1:240:113,127:113:4002:127:4397:-323.646,0,-288.125	0/0:101:91,9:91:3206:9:320:0,-1.18518,-259.636	0/0:167:165,2:165:5816:2:43:0,-46.303,-519.59	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	.:.:.:.:.:.:.:.	0/1:5:4,1:4:136:1:36:-2.09312,0,-11.0704	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/1:388:167,221:167:5815:221:7638:-570.683,0,-406.675	0/1:142:63,79:63:2214:79:2662:-197.052,0,-156.778	0/1:106:44,62:44:1516:62:2157:-162.483,0,-104.82	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:164:121,43:121:4236:43:1480:-83.9238,0,-332.055	0/1:69:34,35:34:1137:35:1218:-89.1491,0,-81.8558	0/1:221:117,104:117:4095:104:3601:-257.697,0,-302.211	0/1:223:124,99:124:4288:99:3431:-241.875,0,-318.979	0/1:179:84,95:84:2919:95:3276:-241.177,0,-209.063	0/0:144:144,0:144:5058:0:0:0,-43.3483,-455.372	0/0:126:125,0:125:4433:0:0:0,-37.6287,-398.784	0/1:247:113,134:113:3984:134:4677:-346.674,0,-284.399	0/0:170:170,0:170:5978:0:0:0,-51.1751,-536.686	0/0:124:123,1:123:4319:1:36:0,-33.7294,-385.294	0/1:125:73,52:73:2563:52:1765:-121.495,0,-193.288	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:155:86,69:86:3043:69:2436:-172.835,0,-227.442	0/0:76:76,0:76:2649:0:0:0,-22.8783,-238.658	0/1:10:9,1:9:311:1:36:-0.587975,0,-25.3134	0/1:117:59,57:59:2087:57:1952:-140.672,0,-152.821	0/1:85:37,48:37:1319:48:1644:-122.65,0,-93.4236	0/1:20:12,8:12:416:8:269:-18.5155,0,-31.751	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:141:141,0:141:4994:0:0:0,-42.4452,-449.296	0/0:205:202,3:202:6965:3:100:0,-52.3807,-617.605	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:226:225,1:225:7942:1:36:0,-64.4345,-711.189	0/0:194:190,4:190:6695:4:131:0,-46.2863,-589.964	0/1:169:102,67:102:3570:67:2311:-157.209,0,-270.632	0/0:96:96,0:96:3341:0:0:0,-28.8989,-300.905	0/1:185:97,88:97:3380:88:3029:-217.141,0,-248.731	0/1:171:62,109:62:2191:109:3771:-288.056,0,-145.951	0/1:70:33,37:33:1114:37:1283:-94.6953,0,-79.4869	0/0:92:92,0:92:3263:0:0:0,-27.6948,-293.892	0/1:123:64,59:64:2228:59:2071:-149.634,0,-163.757	0/1:35:16,19:16:568:19:665:-49.6367,0,-40.9158	0/0:156:156,0:156:5495:0:0:0,-46.9607,-494.685	0/1:103:45,58:45:1592:58:2016:-150.691,0,-112.561	0/0:262:262,0:262:9202:0:0:0,-78.8699,-828.14	0/0:178:178,0:178:6276:0:0:0,-53.5833,-564.905	0/1:146:68,78:68:2393:78:2774:-205.952,0,-171.676	0/0:134:132,2:132:4669:2:72:0,-33.5013,-413.539	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:141:141,0:141:4852:0:0:0,-42.4452,-436.846	0/1:101:39,62:39:1376:62:2158:-164.078,0,-93.7346	0/1:216:121,95:121:4280:95:3263:-228.869,0,-320.098	0/1:195:88,107:88:3042:107:3773:-281.071,0,-214.294	0/1:170:75,95:75:2593:95:3298:-245.864,0,-182.441	0/1:172:81,89:81:2801:89:3013:-219.822,0,-200.752	0/1:334:174,160:174:6036:160:5431:-388.39,0,-442.789	0/0:68:68,0:68:2356:0:0:0,-20.47,-212.299	0/0:174:174,0:174:6112:0:0:0,-52.3792,-550.19	0/0:143:142,0:142:4905:0:0:0,-42.7463,-441.345	0/1:97:44,53:44:1468:53:1805:-133.325,0,-103.206	0/1:191:84,107:84:2875:107:3692:-274.978,0,-201.493	0/1:216:70,146:70:2432:146:5011:-386.122,0,-153.094	0/0:184:184,0:184:6467:0:0:0,-55.3895,-582.031	0/0:267:265,1:265:9155:1:36:0,-76.8156,-820.189
chr07	22251737	.	T	C	91645.6	PASS	AB=0.497789;ABP=3.16395;AC=134;AF=0.712766;AN=188;AO=4439;CIGAR=1X;DP=6264;DPB=6264;DPRA=0;EPP=9529.59;EPPR=3888.08;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9822;MQMR=59.9973;NS=94;NUMALT=1;ODDS=0.343475;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158361;QR=65221;RO=1821;RPL=13;RPP=9529.59;RPPR=3888.08;RPR=4426;RUN=1;SAF=4439;SAP=9642.18;SAR=0;SRF=1821;SRP=3957.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:13,32:13:468:32:1144:-89.7232,0,-28.9133	0/1:42:20,22:20:720:22:784:-58.2407,0,-52.4855	0/1:176:89,87:89:3183:87:3102:-226.426,0,-233.712	0/1:183:106,77:106:3796:77:2756:-193.193,0,-286.747	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:91:26,65:26:924:65:2328:-182.386,0,-56.0839	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:70:22,47:22:792:47:1679:-130.298,0,-50.5129	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	1/1:105:0,105:0:0:105:3730:-335.901,-31.6082,0	0/1:75:29,46:29:1032:46:1644:-125.671,0,-70.6162	0/1:46:26,20:26:932:20:699:-49.3845,0,-70.3515	0/1:90:49,41:49:1760:41:1468:-105.323,0,-131.591	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:41:16,25:16:576:25:900:-68.9788,0,-39.8328	0/1:32:21,11:21:752:11:392:-25.9871,0,-58.3733	1/1:112:0,112:0:0:112:4003:-360.459,-33.7154,0	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	0/1:39:18,21:18:648:21:752:-56.2661,0,-46.9117	0/1:27:10,17:10:360:17:599:-46.1103,0,-24.6165	0/1:205:105,100:105:3760:100:3580:-260.696,0,-276.888	1/1:109:0,109:0:0:109:3891:-350.385,-32.8123,0	1/1:34:0,34:0:0:34:1209:-109.114,-10.235,0	0/1:126:63,63:63:2264:63:2256:-165.373,0,-166.093	1/1:99:2,97:2:72:97:3448:-303.564,-22.9652,0	1/1:99:0,99:0:0:99:3522:-317.19,-29.802,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	0/1:188:93,95:93:3340:95:3385:-248.272,0,-244.223	0/1:83:34,49:34:1212:49:1756:-133.339,0,-84.4008	0/1:41:17,24:17:612:24:856:-65.0189,0,-43.0712	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:89:33,56:33:1184:56:2004:-153.842,0,-80.0766	0/1:27:14,13:14:504:13:464:-33.9697,0,-37.5703	0/1:55:34,21:34:1224:21:741:-50.4549,0,-93.9104	0/1:55:26,29:26:927:29:1023:-75.8251,0,-67.1907	0/1:50:31,19:31:1103:19:675:-46.0255,0,-84.5283	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	1/1:74:0,74:0:0:74:2629:-236.856,-22.2762,0	0/1:60:25,35:25:888:35:1248:-94.5631,0,-62.1768	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	0/1:67:35,32:35:1256:32:1144:-83.1005,0,-93.1763	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:90:44,46:44:1580:46:1634:-120.255,0,-115.399	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:5:1,4:1:36:4:135:-10.9774,0,-2.09312	0/1:137:61,76:61:2175:76:2720:-203.802,0,-154.775	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:163:0,163:0:0:163:5815:-523.464,-49.0679,0	1/1:139:1,136:1:36:136:4846:-432.694,-38.0027,0	0/1:56:31,25:31:1104:25:900:-64.4633,0,-82.813	1/1:52:0,52:0:0:52:1844:-166.238,-15.6536,0	0/1:102:67,35:67:2391:35:1252:-82.28,0,-184.742	0/1:103:63,40:63:2255:40:1423:-97.3606,0,-172.206	0/1:43:18,25:18:644:25:892:-67.6554,0,-45.3463	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	0/1:42:20,22:20:716:22:779:-57.7888,0,-52.1245	0/1:37:22,15:22:792:15:540:-37.7984,0,-60.4676	1/1:87:0,87:0:0:87:3115:-280.568,-26.1896,0	0/1:85:47,38:47:1692:38:1352:-96.3695,0,-126.979	1/1:127:0,127:0:0:127:4533:-408.136,-38.2308,0	1/1:125:1,124:1:36:124:4412:-393.655,-34.0305,0	0/1:38:17,21:17:603:21:740:-55.4842,0,-43.1604	1/1:87:0,87:0:0:87:3098:-279.044,-26.1896,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:58:32,26:32:1152:26:928:-66.3785,0,-86.5304	0/1:146:72,74:72:2580:74:2646:-194.435,0,-188.499	0/1:67:33,34:33:1188:34:1212:-89.2173,0,-87.0596	0/1:88:53,35:53:1895:35:1247:-86.0434,0,-144.337	0/1:45:26,19:26:936:19:684:-48.344,0,-71.0131	0/1:146:74,72:74:2656:72:2551:-185.89,0,-195.335	1/1:20:1,19:1:36:19:684:-58.2921,-2.42233,0	1/1:78:0,78:0:0:78:2793:-251.608,-23.4803,0	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0	0/1:19:8,11:8:273:11:396:-30.2632,0,-19.1806	0/1:133:67,66:67:2395:66:2354:-172.081,0,-175.77	0/1:75:49,26:49:1745:26:904:-59.0955,0,-134.755	1/1:87:0,87:0:0:87:3048:-274.535,-26.1896,0	1/1:106:0,105:0:0:105:3751:-337.43,-31.6082,0
chr07	22251945	.	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chr07	22282191	.	C	T	57070.8	PASS	AB=0.477184;ABP=28.5748;AC=54;AF=0.287234;AN=188;AO=2719;CIGAR=1X;DP=10291;DPB=10291;DPRA=1.18088;EPP=1703.04;EPPR=16028.8;GTI=1;LEN=1;MEANALT=1.05;MQM=54.3542;MQMR=59.7402;NS=94;NUMALT=1;ODDS=1.35257;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97099;QR=270619;RO=7567;RPL=2089;RPP=1703.04;RPPR=16028.8;RPR=630;RUN=1;SAF=0;SAP=5907.24;SAR=2719;SRF=0;SRP=16434.5;SRR=7567;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:9,8:9:324:8:288:-21.0792,0,-24.3883	0/1:163:81,82:81:2900:82:2895:-209.606,0,-211.719	0/1:136:69,67:69:2455:67:2385:-172.888,0,-180.261	0/1:221:116,105:116:4152:105:3753:-270.884,0,-307.207	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.032	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.824	0/0:173:173,0:173:6201:0:0:0,-52.0782,-558.163	0/1:282:133,149:133:4745:149:5296:-389.487,0,-342.205	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.411	0/1:114:54,60:54:1932:60:2133:-157.65,0,-139.839	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1505	0/0:41:41,0:41:1444:0:0:0,-12.3422,-130.243	0/1:42:27,15:27:972:15:540:-36.0106,0,-75.1479	0/1:42:13,29:13:464:29:1044:-80.9021,0,-29.4542	0/1:34:20,14:20:720:14:500:-34.899,0,-54.8914	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:39:39,0:39:1389:0:0:0,-11.7402,-124.743	0/1:13:9,4:9:324:4:144:-9.36676,0,-25.5925	0/1:260:154,106:154:5492:106:3779:-261.405,0,-416.116	0/0:156:156,0:156:5588:0:0:0,-46.9607,-503.022	0/1:112:40,72:40:1432:72:2588:-198.835,0,-95.4595	0/0:159:159,0:159:5693:0:0:0,-47.8638,-512.38	0/1:134:63,71:63:2268:71:2552:-189.011,0,-163.969	0/1:52:14,38:14:504:38:1333:-103.664,0,-30.0319	0/1:444:237,207:237:8461:207:7406:-532.226,0,-627.802	0/0:186:186,0:186:6627:0:0:0,-55.9916,-596.484	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/1:360:179,181:179:6423:181:6489:-475.285,0,-469.587	0/0:302:288,14:288:10283:14:504:0,-45.3127,-879.755	0/0:174:171,3:171:6101:3:108:0,-42.3113,-539.103	0/1:25:12,13:12:432:13:468:-34.8737,0,-31.6954	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:14:9,5:9:324:5:180:-12.296,0,-25.2914	0/1:19:11,8:11:396:8:288:-20.2316,0,-30.2598	0/1:104:58,46:58:2070:46:1656:-117.84,0,-155.261	0/1:290:154,136:154:5512:136:4828:-346.285,0,-408.775	0/1:27:14,13:14:482:13:468:-34.2277,0,-35.5782	0/1:3:2,1:2:72:1:36:-2.68614,0,-5.93363	0/1:333:201,132:201:7199:132:4683:-320.239,0,-547.685	0/1:18:11,7:11:396:7:252:-17.4749,0,-30.5642	0/1:92:51,41:51:1828:41:1472:-104.695,0,-137.101	0/1:27:17,10:17:604:10:356:-24.2064,0,-46.5591	0/1:38:22,16:22:792:16:572:-40.259,0,-60.0602	0/0:129:129,0:129:4620:0:0:0,-38.8329,-415.889	0/0:186:186,0:186:6642:0:0:0,-55.9916,-597.845	0/1:201:105,96:105:3763:96:3452:-250.007,0,-278.345	0/0:157:157,0:157:5616:0:0:0,-47.2617,-505.537	0/0:177:177,0:177:6337:0:0:0,-53.2823,-570.363	0/1:55:31,24:31:1093:24:864:-61.4954,0,-82.1174	0/1:37:20,17:20:720:17:612:-44.1654,0,-53.9907	0/1:157:91,65:91:3263:65:2321:-160.835,0,-246.586	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.481	0/1:31:24,7:24:856:7:248:-13.2793,0,-68.0245	0/1:166:90,76:90:3232:76:2713:-193.971,0,-241.13	0/1:67:42,25:42:1490:25:896:-60.7341,0,-114.215	0/1:21:2,19:2:72:19:680:-55.1865,0,-0.515092	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:158:157,0:157:5609:0:0:0,-47.2617,-504.544	0/0:71:70,1:70:2512:1:36:0,-17.7774,-222.65	0/1:14:11,3:11:396:3:108:-5.85348,0,-31.7683	0/0:335:333,1:333:11909:1:32:0,-97.6845,-1067.96	0/0:287:285,1:285:10182:1:32:0,-83.2408,-913.079	0/1:91:43,48:43:1536:48:1716:-126.117,0,-111.126	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.525	0/1:261:137,124:137:4875:124:4456:-322.085,0,-360.321	0/1:110:45,65:45:1616:65:2317:-175.32,0,-112.614	0/1:6:2,4:2:72:4:144:-11.3247,0,-5.03054	0/0:92:92,0:92:3300:0:0:0,-27.6948,-296.432	0/1:70:32,38:32:1152:38:1368:-102.252,0,-82.918	0/1:32:17,15:17:612:15:520:-37.3709,0,-45.7805	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.39	0/1:53:28,25:28:1004:25:896:-64.7101,0,-74.7213	0/0:254:254,0:254:9096:0:0:0,-76.4616,-818.321	0/0:223:223,0:223:7975:0:0:0,-67.1297,-717.759	0/1:110:68,42:68:2444:42:1460:-98.1,0,-187.098	0/0:131:130,1:130:4668:1:36:0,-35.8457,-416.671	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:164:164,0:164:5853:0:0:0,-49.3689,-526.706	0/1:136:58,78:58:2072:78:2768:-207.623,0,-145.378	0/1:308:154,154:154:5528:154:5524:-403.545,0,-404.856	0/1:63:36,27:36:1292:27:967:-68.1989,0,-97.6165	0/1:42:23,19:23:828:19:684:-49.2024,0,-62.2009	0/1:41:24,17:24:860:17:612:-42.9667,0,-65.3074	0/1:71:40,31:40:1417:31:1116:-79.2232,0,-106.439	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.326	0/0:51:51,0:51:1805:0:0:0,-15.3525,-162.723	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.45	0/1:20:14,6:14:504:6:216:-13.6351,0,-39.6729	0/1:49:27,22:27:959:22:788:-56.3172,0,-71.8669	0/1:26:11,15:11:396:15:521:-39.2749,0,-28.1503	0/0:141:140,0:140:5023:0:0:0,-42.1442,-451.845	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.758
chr07	22291308	.	AAGG	TAGA,AAGA	143941	PASS	AB=0.535265,0.459862;ABP=45.1282,57.5722;AC=129,57;AF=0.693548,0.306452;AN=186;AO=5043,1806;CIGAR=1X2M1X,3M1X;DP=6882;DPB=6882;DPRA=28.6417,1.05111;EPP=10772.1,3890.02;EPPR=5.18177;GTI=2;LEN=4,1;MEANALT=1.91111,2.24138;MQM=59.9649,60;MQMR=60;NS=93;NUMALT=2;ODDS=0.471598;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=176656,64552;QR=30;RO=1;RPL=5022,1802;RPP=10772.1,3890.02;RPPR=5.18177;RPR=21,4;RUN=1,1;SAF=0,0;SAP=10953.7,3924.69;SAR=5043,1806;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,9,21:0:0:9,21:306,756:-86.8601,-62.0456,-59.3363,-25.1603,0,-18.8387	1/2:82:0,42,39:0:0:42,39:1472,1400:-234.093,-114.316,-101.673,-119.887,0,-108.147	1/2:194:0,99,95:0:0:99,95:3484,3396:-560.875,-277.258,-247.456,-283.972,0,-255.374	1/2:195:0,114,79:0:0:114,79:3990,2840:-556.395,-231.769,-197.452,-324.694,0,-300.913	1/1:24:0,24,0:0:0:24,0:833,0:-75.2723,-7.22472,0,-75.2723,-7.22472,-75.2723	1/1:7:0,7,0:0:0:7,0:251,0:-22.9379,-2.10721,0,-22.9379,-2.10721,-22.9379	1/1:54:0,54,0:0:0:54,0:1875,0:-169.026,-16.2556,0,-169.026,-16.2556,-169.026	1/2:84:0,47,37:0:0:47,37:1632,1324:-240.987,-108.324,-94.1756,-133.016,0,-121.878	1/1:54:0,54,0:0:0:54,0:1891,0:-170.468,-16.2556,0,-170.468,-16.2556,-170.468	1/2:47:0,31,16:0:0:31,16:1089,576:-135.989,-47.3585,-38.0266,-88.9872,0,-84.1708	1/1:37:0,37,0:0:0:37,0:1287,0:-116.128,-11.1381,0,-116.128,-11.1381,-116.128	1/1:73:0,73,0:0:0:73,0:2567,0:-231.282,-21.9752,0,-231.282,-21.9752,-231.282	1/2:70:0,37,33:0:0:37,33:1314,1184:-204.001,-96.9343,-85.7962,-107.424,0,-97.4897	1/2:42:0,20,22:0:0:20,22:696,788:-121.209,-64.6221,-58.6015,-56.9398,0,-50.3172	1/2:61:0,29,32:0:0:29,32:1018,1144:-176.483,-93.6366,-84.9067,-83.2007,0,-73.5677	1/1:51:0,51,0:0:0:51,0:1809,0:-163.092,-15.3525,0,-163.092,-15.3525,-163.092	1/1:16:0,16,0:0:0:16,0:564,0:-51.0892,-4.81648,0,-51.0892,-4.81648,-51.0892	1/1:35:0,35,0:0:0:35,0:1252,0:-112.985,-10.5361,0,-112.985,-10.5361,-112.985	1/2:20:0,12,8:0:0:12,8:421,279:-57.3017,-23.0393,-19.4269,-34.6119,0,-32.2036	1/2:176:0,104,72:0:0:104,72:3643,2584:-507.54,-211.135,-179.828,-296.76,0,-275.086	1/1:163:0,162,0:0:0:162,0:5673,0:-510.401,-48.7669,0,-510.401,-48.7669,-510.401	1/2:88:0,24,64:0:0:24,64:836,2278:-253.997,-186.015,-178.79,-68.3319,0,-49.0659	1/1:113:0,112,1:0:0:112,1:3876,27:-348.771,-33.7154,0,-346.643,-31.3166,-346.342	1/2:42:0,25,16:0:0:25,16:877,572:-118.004,-46.6373,-39.1115,-71.3616,0,-66.5451	1/2:33:0,22,11:0:0:22,11:788,388:-96.2141,-31.946,-25.3234,-64.6225,0,-61.3111	1/2:171:0,104,67:0:0:104,67:3641,2393:-491.695,-195.457,-164.15,-296.592,0,-276.423	1/1:207:0,204,0:0:0:204,0:7123,0:-640.808,-61.4101,0,-640.808,-61.4101,-640.808	1/1:28:0,28,0:0:0:28,0:974,0:-87.9717,-8.42884,0,-87.9717,-8.42884,-87.9717	1/2:183:0,102,80:0:0:102,80:3607,2851:-526.165,-232.386,-201.681,-293.775,0,-269.692	1/1:100:0,100,0:0:0:100,0:3498,0:-315.036,-30.103,0,-315.036,-30.103,-315.036	1/1:101:0,100,0:0:0:100,0:3497,0:-314.654,-30.103,0,-314.654,-30.103,-314.654	1/2:5:0,1,4:0:0:1,4:35,144:-14.9552,-12.1095,-11.8085,-3.1976,0,-1.99348	1/1:14:0,14,0:0:0:14,0:490,0:-44.4302,-4.21442,0,-44.4302,-4.21442,-44.4302	1/1:3:0,3,0:0:0:3,0:105,0:-9.79609,-0.90309,0,-9.79609,-0.90309,-9.79609	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/2:10:0,5,5:0:0:5,5:180,180:-29.734,-15.0469,-13.5418,-15.0469,0,-13.5418	1/2:130:0,72,58:0:0:72,58:2502,2077:-373.144,-169.74,-148.065,-203.758,0,-186.298	1/2:83:0,43,40:0:0:43,40:1506,1424:-238.95,-116.416,-103.471,-122.887,0,-110.846	1/2:47:0,27,20:0:0:27,20:939,703:-133.917,-57.5729,-49.4451,-76.6941,0,-70.6735	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:123:0,74,48:0:0:74,48:2571,1707:-348.118,-139.106,-116.83,-209.005,0,-194.555	1/2:35:0,18,17:0:0:18,17:632,612:-101.728,-50.2959,-44.8774,-51.7875,0,-46.67	1/2:115:1,67,47:1:30:67,47:2351,1680:-325.662,-134.64,-116.869,-188.979,0,-177.228	1/2:37:0,14,23:0:0:14,23:500,824:-108.324,-67.5596,-63.3452,-41.1218,0,-34.1981	1/2:28:0,18,10:0:0:18,10:631,351:-80.263,-28.9164,-23.4978,-51.6974,0,-48.6871	1/1:60:0,58,0:0:0:58,0:2021,0:-181.922,-17.4597,0,-181.922,-17.4597,-181.922	1/1:55:0,55,0:0:0:55,0:1901,0:-171.366,-16.5567,0,-171.366,-16.5567,-171.366	1/2:191:0,107,83:0:0:107,83:3703,2963:-542.473,-241.558,-209.348,-300.907,0,-275.922	1/1:75:0,75,0:0:0:75,0:2653,0:-239.019,-22.5773,0,-239.019,-22.5773,-239.019	1/1:134:0,133,0:0:0:133,0:4686,0:-421.508,-40.037,0,-421.508,-40.037,-421.508	1/2:74:0,37,37:0:0:37,37:1282,1332:-213.232,-109.044,-97.9062,-104.541,0,-93.4031	1/2:7:0,4,3:0:0:4,3:141,108:-20.6484,-9.17208,-7.96796,-11.8329,0,-10.9298	1/2:134:0,73,61:0:0:73,61:2538,2177:-384.173,-177.832,-155.856,-206.694,0,-188.331	1/1:66:0,66,0:0:0:66,0:2289,0:-206.27,-19.868,0,-206.27,-19.868,-206.27	1/2:7:0,2,5:0:0:2,5:71,180:-20.8306,-15.0469,-14.4449,-6.14,0,-4.63485	1/2:143:0,79,64:0:0:79,64:2734,2268:-406.97,-185.115,-161.334,-222.205,0,-202.939	1/2:25:0,16,9:0:0:16,9:537,320:-69.9152,-26.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chr07	22381218	.	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chr07	22383916	.	A	G	31691.1	PASS	AB=0.492668;ABP=4.82535;AC=54;AF=0.287234;AN=188;AO=1924;CIGAR=1X;DP=6702;DPB=6702;DPRA=1.06278;EPP=4180.92;EPPR=10108.6;GTI=1;LEN=1;MEANALT=1.01724;MQM=59.7796;MQMR=59.9784;NS=94;NUMALT=1;ODDS=3.68817;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68416;QR=170340;RO=4777;RPL=1924;RPP=4180.92;RPPR=10117.2;RPR=0;RUN=1;SAF=0;SAP=4180.92;SAR=1924;SRF=1;SRP=10367.4;SRR=4776;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:19,13:19:676:13:451:-31.2852,0,-51.535	0/1:87:43,44:43:1527:44:1580:-116.294,0,-111.533	0/1:77:37,40:37:1328:40:1428:-105.637,0,-96.6429	0/1:146:83,63:83:2946:63:2244:-158.27,0,-221.422	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.136	0/1:113:60,53:60:2130:53:1882:-135.632,0,-157.933	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/1:86:51,35:51:1832:35:1226:-84.7392,0,-139.272	0/0:38:37,1:37:1332:1:36:0,-7.84086,-116.584	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/1:44:27,17:27:964:17:612:-42.1681,0,-73.8315	0/1:37:20,17:20:712:17:587:-42.0157,0,-53.2685	0/1:38:18,20:18:648:20:712:-52.9675,0,-47.2127	0/0:35:35,0:35:1236:0:0:0,-10.536,-111.544	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:12:6,6:6:216:6:216:-16.1493,0,-16.1782	0/1:159:67,92:67:2404:92:3284:-247.855,0,-168.753	0/0:71:71,0:71:2530:0:0:0,-21.3731,-227.946	0/1:92:20,72:20:720:72:2575:-204.304,0,-37.434	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/1:75:35,40:35:1252:40:1432:-106.6,0,-90.4078	0/1:63:32,31:32:1143:31:1100:-80.3436,0,-84.2138	0/1:240:134,106:134:4800:106:3753:-265.249,0,-359.908	0/0:138:137,1:137:4908:1:36:0,-37.9439,-438.273	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/1:243:115,128:115:4098:128:4525:-333.388,0,-295.855	0/0:113:113,0:113:4007:0:0:0,-34.0164,-360.82	0/0:115:115,0:115:4091:0:0:0,-34.6184,-368.378	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:114:66,48:66:2355:48:1702:-119.147,0,-177.891	0/1:151:79,71:79:2787:71:2532:-182.598,0,-205.556	0/1:34:18,16:18:635:16:559:-40.4026,0,-47.2396	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:115:60,55:60:2144:55:1959:-141.966,0,-158.609	0/1:30:16,14:16:576:14:500:-36.3053,0,-43.1441	0/1:127:63,64:63:2207:64:2275:-166.536,0,-160.662	0/1:24:11,13:11:396:13:459:-34.4194,0,-28.758	0/1:32:18,14:18:644:14:496:-35.3413,0,-48.6576	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.098	0/0:120:120,0:120:4250:0:0:0,-36.1236,-382.455	0/1:133:78,55:78:2776:55:1958:-136.455,0,-210.045	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.497	0/0:97:97,0:97:3448:0:0:0,-29.1999,-310.53	0/1:163:87,76:87:3107:76:2709:-194.981,0,-230.789	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:84:45,39:45:1607:39:1390:-100.104,0,-119.633	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/1:83:43,40:43:1524:40:1424:-103.472,0,-112.468	0/1:43:18,25:18:640:25:896:-68.0159,0,-44.985	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:85:84,1:84:2994:1:36:0,-21.9893,-266.093	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:143:143,0:143:5086:0:0:0,-43.0473,-457.697	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.92	0/1:54:21,33:21:740:33:1163:-88.7205,0,-50.6677	0/0:76:76,0:76:2690:0:0:0,-22.8783,-242.345	0/1:137:72,65:72:2564:65:2297:-165.746,0,-189.769	0/1:102:39,63:39:1404:63:2237:-170.88,0,-95.9542	0/0:21:20,1:20:716:1:36:0,-2.72335,-61.169	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/1:76:36,40:36:1288:40:1432:-106.299,0,-93.3453	0/1:18:12,6:12:432:6:203:-13.1817,0,-33.8027	0/0:138:138,0:138:4943:0:0:0,-41.5421,-445.019	0/1:25:14,11:14:491:11:392:-28.0943,0,-36.9954	0/0:97:97,0:97:3434:0:0:0,-29.1999,-309.275	0/0:114:114,0:114:4100:0:0:0,-34.3174,-369.183	0/1:108:72,36:72:2580:36:1280:-82.992,0,-199.929	0/0:60:57,3:57:2024:3:108:0,-7.98663,-172.358	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:87:87,0:87:3095:0:0:0,-26.1896,-278.778	0/1:108:50,58:50:1775:58:2067:-153.788,0,-127.521	0/1:188:90,98:90:3190:98:3496:-258.258,0,-230.731	0/1:84:42,42:42:1504:42:1487:-108.799,0,-110.368	0/1:36:20,16:20:720:16:572:-40.9754,0,-54.2917	0/1:40:25,15:25:896:15:532:-36.1637,0,-68.9192	0/1:78:47,31:47:1675:31:1116:-77.2152,0,-127.556	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/1:23:10,13:10:356:13:460:-34.8117,0,-25.4576	0/1:55:24,31:24:852:31:1112:-83.8347,0,-60.4437	0/1:32:12,20:12:406:20:704:-53.9953,0,-27.2312	0/0:86:86,0:86:3066:0:0:0,-25.8886,-276.168	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705
chr07	22383928	.	A	G	31578.8	PASS	AB=0.491183;ABP=5.61426;AC=55;AF=0.292553;AN=188;AO=1913;CIGAR=1X;DP=6667;DPB=6667;DPRA=1.07807;EPP=4157.04;EPPR=10326.2;GTI=1;LEN=1;MEANALT=1;MQM=59.758;MQMR=59.9785;NS=94;NUMALT=1;ODDS=1.65229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68290;QR=169379;RO=4754;RPL=1913;RPP=4157.04;RPPR=10326.2;RPR=0;RUN=1;SAF=0;SAP=4157.04;SAR=1913;SRF=0;SRP=10326.2;SRR=4754;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:18,13:18:644:13:459:-32.3111,0,-48.9587	0/1:92:46,46:46:1631:46:1644:-120.534,0,-119.383	0/1:79:39,40:39:1396:40:1424:-104.675,0,-102.158	0/1:143:80,63:80:2810:63:2248:-159.529,0,-210.092	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.241	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/1:112:59,53:59:2108:53:1908:-138.273,0,-156.256	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/1:90:54,36:54:1916:36:1280:-88.3677,0,-145.625	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/1:44:27,17:27:972:17:599:-40.9928,0,-74.5526	0/1:35:19,16:19:684:16:576:-41.6389,0,-51.3543	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2127	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:12:5,7:5:180:7:248:-19.0231,0,-12.9397	0/1:159:66,93:66:2349:93:3324:-251.454,0,-163.804	0/0:71:70,1:70:2500:1:36:0,-17.7749,-221.655	0/1:92:20,72:20:701:72:2584:-205.114,0,-35.7169	0/0:69:68,1:68:2425:1:36:0,-17.1728,-214.906	0/1:75:35,40:35:1260:40:1419:-105.429,0,-91.1282	0/1:63:32,31:32:1144:31:1108:-81.0643,0,-84.3046	0/1:239:135,104:135:4824:104:3728:-263.266,0,-362.37	0/0:142:141,1:141:4994:1:36:0,-39.148,-446.012	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/1:239:115,124:115:4124:124:4399:-323.26,0,-299.397	0/0:114:114,0:114:4060:0:0:0,-34.3174,-365.589	0/0:116:116,0:116:4133:0:0:0,-34.9195,-372.154	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	0/1:115:66,49:66:2368:49:1752:-123.346,0,-178.76	0/1:150:80,70:80:2860:70:2512:-181.16,0,-212.483	0/1:33:17,16:17:608:16:567:-41.4267,0,-45.1157	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/1:115:60,55:60:2129:55:1964:-142.417,0,-157.258	0/1:29:16,13:16:576:13:464:-33.3676,0,-43.4451	0/1:128:65,63:65:2312:63:2230:-161.715,0,-169.809	0/1:24:11,13:11:392:13:468:-35.2349,0,-28.3953	0/1:35:21,14:21:740:14:500:-34.8001,0,-56.3873	0/0:63:63,0:63:2229:0:0:0,-18.9649,-200.873	0/0:115:115,0:115:4104:0:0:0,-34.6184,-369.319	0/1:129:76,53:76:2705:53:1892:-131.723,0,-204.86	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.186	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.579	0/1:159:85,74:85:3036:74:2655:-191.328,0,-225.607	0/1:9:4,5:4:140:5:176:-13.4757,0,-10.2353	0/1:82:44,38:44:1576:38:1368:-98.7273,0,-117.447	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/1:84:44,40:44:1580:40:1407:-101.147,0,-117.205	0/1:41:17,24:17:608:24:843:-63.8448,0,-42.7098	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:17:17,0:17:582:0:0:0,-5.11751,-52.6988	0/0:97:97,0:97:3452:0:0:0,-29.1999,-310.886	0/0:88:87,1:87:3124:1:36:0,-22.8924,-277.787	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:138:138,0:138:4867:0:0:0,-41.5421,-438.186	0/0:124:124,0:124:4436:0:0:0,-37.3277,-399.412	0/1:53:22,31:22:780:31:1104:-83.716,0,-54.5684	0/0:76:76,0:76:2685:0:0:0,-22.8783,-241.895	0/1:137:70,67:70:2508:67:2388:-173.934,0,-184.731	0/1:101:39,62:39:1396:62:2204:-168.211,0,-95.5351	0/0:21:20,1:20:716:1:36:0,-2.72335,-61.169	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/1:75:35,40:35:1256:40:1428:-106.24,0,-90.768	0/1:18:12,6:12:416:6:212:-14.0039,0,-32.3531	0/0:139:139,0:139:4946:0:0:0,-41.8432,-445.061	0/1:24:13,11:13:464:11:396:-28.758,0,-34.8728	0/0:98:98,0:98:3477:0:0:0,-29.5009,-313.142	0/0:112:112,0:112:4000:0:0:0,-33.7154,-360.191	0/1:103:67,36:67:2369:36:1288:-85.2175,0,-182.453	0/0:58:55,3:55:1930:3:108:0,-7.38457,-163.898	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:88:88,0:88:3128:0:0:0,-26.4906,-281.748	0/1:107:50,57:50:1780:57:2044:-152.022,0,-128.273	0/1:187:93,94:93:3332:94:3355:-245.874,0,-243.805	0/1:81:41,40:41:1472:40:1432:-104.756,0,-108.393	0/1:36:20,16:20:720:16:576:-41.337,0,-54.2917	0/1:40:25,15:25:900:15:540:-36.8871,0,-69.2798	0/1:77:45,32:45:1600:32:1121:-77.9603,0,-121.111	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:55:54,1:54:1936:1:36:0,-12.9584,-170.918	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	0/1:53:23,30:23:807:30:1076:-81.1983,0,-56.9946	0/1:35:12,23:12:415:23:824:-63.8901,0,-27.1442	0/0:86:86,0:86:3041:0:0:0,-25.8886,-273.921	0/0:61:61,0:61:2187:0:0:0,-18.3628,-197.095
chr07	22434981	.	T	C	193576	PASS	AB=0.505771;ABP=4.83983;AC=132;AF=0.702128;AN=188;AO=7781;CIGAR=1X;DP=10949;DPB=10949;DPRA=33.9814;EPP=16899.2;EPPR=6858.35;GTI=1;LEN=1;MEANALT=1.1087;MQM=49.5277;MQMR=59.7624;NS=94;NUMALT=1;ODDS=0.303434;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=271099;QR=112929;RO=3157;RPL=3728;RPP=32.4875;RPPR=8.95932;RPR=4053;RUN=1;SAF=3728;SAP=32.4875;SAR=4053;SRF=1532;SRP=8.95932;SRR=1625;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:30,43:30:1076:43:1459:-101.247,0,-75.0991	0/1:160:67,93:67:2408:93:3289:-240.388,0,-168.805	0/1:174:85,89:85:3025:89:3073:-208.105,0,-220.081	0/1:167:86,81:86:3084:81:2852:-199.067,0,-227.515	1/1:88:1,87:1:36:87:3057:-266.704,-22.8924,0	1/1:88:0,88:0:0:88:3096:-269.802,-26.4906,0	1/1:109:0,108:0:0:108:3760:-331.556,-32.5112,0	0/1:147:70,77:70:2495:77:2690:-189.517,0,-180.551	1/1:174:0,174:0:0:174:6086:-515.877,-52.3792,0	0/1:76:38,38:38:1368:38:1334:-94.9692,0,-100.377	1/1:91:1,90:1:36:90:3150:-274.41,-23.7955,0	1/1:145:0,145:0:0:145:5035:-439.625,-43.6494,0	0/1:157:74,83:74:2652:83:2900:-206.298,0,-191.664	0/1:80:30,50:30:1080:50:1784:-134.586,0,-73.4299	0/1:137:68,69:68:2440:69:2419:-173.165,0,-178.606	1/1:93:0,93:0:0:93:3235:-280.946,-27.9958,0	1/1:106:0,106:0:0:106:3766:-334.738,-31.9092,0	1/1:106:0,106:0:0:106:3724:-331.594,-31.9092,0	0/1:73:31,42:31:1078:42:1464:-107.661,0,-75.3067	0/1:195:75,120:75:2688:120:4187:-311.04,0,-183.443	1/1:185:4,181:4:144:181:6207:-525.895,-42.3769,0	0/1:63:40,23:40:1422:23:803:-52.4935,0,-109.297	1/1:121:0,121:0:0:121:4201:-360.674,-36.4246,0	0/1:106:53,53:53:1895:53:1879:-132.341,0,-138.909	0/1:101:58,43:58:2080:43:1474:-98.0818,0,-157.065	0/1:224:98,126:98:3508:126:4411:-322.595,0,-248.489	1/1:278:0,276:0:0:276:9585:-839.126,-83.0843,0	1/1:81:0,81:0:0:81:2851:-251.128,-24.3834,0	0/1:229:120,109:120:4284:109:3845:-273.206,0,-316.793	1/1:143:8,134:8:288:134:4661:-385.23,-16.7047,0	1/1:127:1,125:1:36:125:4359:-378.411,-34.6317,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:21:0,21:0:0:21:718:-63.1736,-6.32163,0	1/1:6:0,6:0:0:6:206:-18.2548,-1.80618,0	0/1:2:1,1:1:36:1:36:-2.69696,0,-2.99621	0/1:13:4,9:4:144:9:290:-20.3464,0,-9.40023	0/1:348:184,164:184:6581:164:5727:-404.841,0,-487.584	0/1:93:45,48:45:1612:48:1670:-118.002,0,-117.345	0/1:87:45,42:45:1599:42:1467:-101.27,0,-117.985	0/1:3:1,2:1:36:2:68:-5.33497,0,-2.69518	0/1:135:53,82:53:1854:82:2827:-207.982,0,-126.44	0/1:62:31,31:31:1108:31:1087:-77.8069,0,-81.3443	0/1:199:90,109:90:3223:109:3715:-259.351,0,-230.214	0/1:139:67,72:67:2399:72:2484:-178.927,0,-174.315	0/1:139:69,70:69:2475:70:2384:-169.786,0,-181.159	1/1:114:0,114:0:0:114:4019:-354.509,-34.3174,0	1/1:181:0,181:0:0:181:6264:-540.59,-54.4864,0	0/1:169:66,103:66:2359:103:3600:-269.133,0,-160.978	1/1:89:0,89:0:0:89:3110:-273.209,-26.7917,0	0/1:107:47,60:47:1680:60:2112:-155.031,0,-119.272	0/1:153:82,71:82:2944:71:2453:-169.687,0,-219.113	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.7966	0/1:152:70,82:70:2520:82:2884:-204.352,0,-181.295	1/1:68:0,68:0:0:68:2349:-207.685,-20.47,0	0/1:12:7,5:7:252:5:180:-12.3891,0,-19.4166	0/1:145:69,76:69:2475:76:2596:-180.962,0,-179.348	0/1:75:40,35:40:1432:35:1189:-83.1007,0,-106.598	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:7:0,7:0:0:7:252:-22.9416,-2.10721,0	1/1:97:1,96:1:36:96:3375:-292.441,-25.6016,0	1/1:173:0,173:0:0:173:6090:-541.664,-52.0782,0	0/1:6:3,3:3:108:3:104:-6.51689,0,-8.26899	1/1:143:1,142:1:36:142:4987:-439.809,-39.4988,0	1/1:189:1,186:1:36:186:6501:-569.309,-53.0331,0	0/1:71:38,33:38:1364:33:1127:-75.6959,0,-100.41	1/1:92:1,91:1:36:91:3179:-275.831,-24.1213,0	0/1:217:114,103:114:4081:103:3615:-253.352,0,-301.915	0/1:146:91,55:91:3259:55:1895:-119.653,0,-248.686	1/1:39:0,39:0:0:39:1369:-120.232,-11.7402,0	1/1:76:1,75:1:36:75:2605:-222.756,-19.28,0	0/1:148:84,64:84:3007:64:2220:-153.761,0,-226.308	0/1:20:8,12:8:284:12:411:-31.0413,0,-19.8828	1/1:116:0,116:0:0:116:4046:-350.592,-34.9195,0	0/1:106:44,62:44:1572:62:2157:-154.544,0,-109.86	1/1:172:1,171:1:36:171:5965:-517.523,-48.1789,0	1/1:170:0,170:0:0:170:5987:-531.095,-51.1751,0	0/1:197:112,85:112:4012:85:2974:-199.279,0,-301.966	1/1:126:1,124:1:36:124:4296:-370.181,-34.3198,0	1/1:7:0,7:0:0:7:252:-22.2698,-2.10721,0	1/1:198:2,196:2:72:196:6882:-600.497,-52.7672,0	0/1:115:67,48:67:2393:48:1628:-107.067,0,-179.807	0/1:166:84,82:84:3011:82:2829:-198.204,0,-221.233	0/1:143:79,64:79:2827:64:2211:-149.653,0,-211.621	0/1:111:56,55:56:1999:55:1946:-139.806,0,-146.765	0/1:147:68,79:68:2431:79:2695:-195.044,0,-174.793	0/1:246:121,124:121:4323:124:4360:-312.824,0,-315.264	1/1:58:0,58:0:0:58:2007:-176.496,-17.4597,0	1/1:115:0,115:0:0:115:3981:-349.134,-34.6185,0	1/1:123:0,122:0:0:122:4223:-370.306,-36.7257,0	0/1:53:32,21:32:1144:21:735:-49.4314,0,-87.3049	0/1:115:45,70:45:1603:70:2445:-181.52,0,-109.941	0/1:115:81,34:81:2903:34:1192:-70.3831,0,-226.884	1/1:102:1,100:1:36:100:3342:-287.304,-27.0906,0	1/1:200:0,200:0:0:200:7001:-619.253,-60.206,0
chr07	22497503	.	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chr07	22509266	.	T	C	193252	PASS	AB=0.521339;ABP=31.8324;AC=134;AF=0.712766;AN=188;AO=9389;CIGAR=1X;DP=12889;DPB=12889;DPRA=0;EPP=20391;EPPR=7600.99;GTI=1;LEN=1;MEANALT=1.01064;MQM=53.1241;MQMR=58.7919;NS=94;NUMALT=1;ODDS=0.099557;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=335384;QR=123015;RO=3499;RPL=9389;RPP=20391;RPPR=7600.99;RPR=0;RUN=1;SAF=0;SAP=20391;SAR=9389;SRF=0;SRP=7600.99;SRR=3499;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:106:61,45:61:2168:45:1616:-113.443,0,-163.33	0/1:113:51,62:51:1790:62:2205:-164.39,0,-126.892	0/1:274:133,141:133:4655:141:5013:-367.456,0,-336.319	0/1:300:147,153:147:5212:153:5457:-398.555,0,-378.42	1/1:94:0,94:0:0:94:3372:-302.343,-28.2968,0	1/1:82:0,82:0:0:82:2869:-257.922,-24.6845,0	1/1:195:0,195:0:0:195:7000:-628.731,-58.7009,0	0/1:215:92,123:92:3239:123:4397:-330.576,0,-226.864	1/1:186:0,186:0:0:186:6634:-595.63,-55.9916,0	0/1:92:49,43:49:1710:43:1548:-111.65,0,-126.354	1/1:80:0,80:0:0:80:2872:-257.543,-24.0824,0	1/1:124:0,124:0:0:124:4448:-398.783,-37.3277,0	0/1:85:34,51:34:1208:51:1831:-138.83,0,-83.3569	0/1:104:44,60:44:1556:60:2130:-160.165,0,-108.23	0/1:92:49,43:49:1740:43:1510:-108.078,0,-129.159	1/1:101:0,101:0:0:101:3624:-325.916,-30.404,0	1/1:60:0,60:0:0:60:2156:-193.987,-18.0618,0	1/1:40:0,40:0:0:40:1440:-129.432,-12.0412,0	0/1:42:24,18:24:852:18:648:-45.9339,0,-64.3352	0/1:132:72,60:72:2480:60:2137:-152.35,0,-183.356	1/1:201:0,201:0:0:201:7153:-642.348,-60.507,0	0/1:164:89,75:89:3098:75:2688:-192.006,0,-229.63	1/1:176:0,176:0:0:176:6267:-561.727,-52.9813,0	0/1:137:66,71:66:2318:71:2552:-187.189,0,-167.424	0/1:148:70,78:70:2454:78:2800:-206.474,0,-174.949	0/1:397:192,205:192:6771:205:7280:-533.306,0,-489.208	1/1:413:0,413:0:0:413:14748:-1323.48,-124.325,0	1/1:43:0,43:0:0:43:1525:-137.191,-12.9443,0	0/1:373:126,247:126:4395:247:8815:-677.024,0,-282.776	1/1:186:6,180:6:216:180:6431:-557.614,-36.2011,0	1/1:198:2,196:2:68:196:6998:-621.8,-53.1468,0	0/1:4:2,2:2:64:2:72:-5.62291,0,-4.87457	1/1:48:0,48:0:0:48:1720:-154.823,-14.4494,0	1/1:9:0,9:0:0:9:320:-29.114,-2.70927,0	0/1:21:10,11:10:356:11:396:-29.6192,0,-26.0596	0/1:41:20,21:20:697:21:748:-55.2385,0,-50.7084	0/1:208:98,110:98:3485:110:3937:-290.857,0,-249.906	0/1:150:70,79:70:2472:79:2817:-207.453,0,-177.615	0/1:49:19,30:19:680:30:1065:-81.2092,0,-46.6728	0/1:9:5,4:5:172:4:144:-10.5855,0,-13.1087	0/1:182:76,106:76:2627:106:3804:-286.429,0,-181.854	0/1:40:25,15:25:876:15:539:-36.5076,0,-67.0514	0/1:257:115,142:115:4035:142:5055:-376.492,0,-285.892	0/1:63:31,32:31:1104:32:1133:-82.6973,0,-79.1521	0/1:68:31,37:31:1074:37:1332:-99.2715,0,-76.4838	1/1:199:0,199:0:0:199:7114:-638.049,-59.905,0	1/1:150:0,150:0:0:150:5320:-477.706,-45.1545,0	0/1:248:114,134:114:4007:134:4782:-354.582,0,-285.791	1/1:120:0,120:0:0:120:4295:-385.79,-36.1236,0	0/1:165:79,86:79:2796:86:3092:-228.29,0,-202.138	0/1:193:61,132:61:2114:132:4748:-368.173,0,-132.099	0/1:30:10,20:10:360:20:708:-54.8387,0,-23.7093	0/1:213:93,120:93:3273:120:4297:-322.361,0,-230.626	1/1:121:0,121:0:0:121:4306:-385.812,-36.4246,0	0/1:19:10,9:10:352:9:309:-22.394,0,-26.2986	0/1:242:106,136:106:3714:136:4845:-361.976,0,-261.356	0/1:79:40,39:40:1417:39:1396:-101.923,0,-103.985	0/1:23:11,12:11:392:12:432:-32.0485,0,-28.6678	1/1:31:0,31:0:0:31:1112:-100.142,-9.33193,0	1/1:181:0,181:0:0:181:6444:-578.213,-54.4864,0	1/1:161:1,160:1:36:160:5752:-512.899,-44.868,0	0/1:23:9,14:9:320:14:504:-38.6874,0,-22.2153	1/1:183:0,183:0:0:183:6538:-586.68,-55.0885,0	1/1:271:0,271:0:0:271:9678:-868.411,-81.5791,0	0/1:150:85,65:85:2974:65:2328:-164.196,0,-222.048	1/1:122:0,122:0:0:122:4356:-391.341,-36.7257,0	0/1:223:97,126:97:3347:126:4494:-335.486,0,-234.128	0/1:242:173,69:173:6097:69:2472:-149.019,0,-475.611	1/1:70:0,70:0:0:70:2496:-223.889,-21.0721,0	1/1:155:2,153:2:72:153:5469:-484.765,-39.8229,0	0/1:53:33,20:33:1180:20:720:-48.82,0,-90.5162	0/1:32:12,20:12:420:20:720:-55.2186,0,-28.4853	1/1:129:0,129:0:0:129:4605:-413.973,-38.8329,0	0/1:56:36,20:36:1257:20:720:-48.204,0,-96.5074	1/1:315:0,315:0:0:315:11201:-1005.04,-94.8245,0	1/1:273:0,273:0:0:273:9797:-878.016,-82.1812,0	0/1:266:135,131:135:4708:131:4670:-339.652,0,-342.339	1/1:174:0,174:0:0:174:6195:-556.891,-52.3792,0	1/1:37:0,37:0:0:37:1328:-119.59,-11.1381,0	1/1:146:0,146:0:0:146:5223:-468.561,-43.9504,0	0/1:194:102,92:102:3590:92:3266:-235.04,0,-264.404	0/1:301:120,181:120:4187:181:6469:-489.046,0,-286.146	0/1:72:38,34:38:1360:34:1209:-87.1866,0,-101.006	0/1:98:49,49:49:1756:49:1760:-128.654,0,-128.543	0/1:46:24,22:24:852:22:792:-57.2157,0,-63.0289	0/1:157:86,71:86:3052:71:2546:-180.807,0,-227.502	1/1:29:0,29:0:0:29:1044:-94.0605,-8.72987,0	1/1:94:1,93:1:36:93:3344:-297.047,-24.6985,0	1/1:91:0,91:0:0:91:3264:-292.479,-27.3937,0	0/1:71:40,31:40:1428:31:1112:-78.8628,0,-106.632	0/1:152:75,77:75:2638:77:2753:-201.887,0,-191.717	0/1:73:48,25:48:1708:25:885:-57.8157,0,-131.875	1/1:202:0,202:0:0:202:7208:-647.11,-60.8081,0	1/1:112:0,112:0:0:112:4020:-359.144,-33.7154,0
chr07	22509271	.	C	A	195331	PASS	AB=0.51987;ABP=28.2943;AC=134;AF=0.712766;AN=188;AO=9475;CIGAR=1X;DP=13025;DPB=13025;DPRA=0;EPP=20577.7;EPPR=7705.22;GTI=0;LEN=1;MEANALT=1.03191;MQM=53.1162;MQMR=58.8252;NS=94;NUMALT=1;ODDS=1.9336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=338819;QR=126537;RO=3547;RPL=9475;RPP=20577.7;RPPR=7705.22;RPR=0;RUN=1;SAF=0;SAP=20577.7;SAR=9475;SRF=0;SRP=7705.22;SRR=3547;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:109:62,47:62:2213:47:1684:-118.648,0,-166.473	0/1:117:53,64:53:1848:64:2262:-168.269,0,-130.911	0/1:276:136,140:136:4794:140:5011:-366.611,0,-348.423	0/1:307:150,157:150:5328:157:5618:-411.213,0,-386.884	1/1:94:0,94:0:0:94:3346:-300.018,-28.2968,0	1/1:82:0,82:0:0:82:2935:-263.736,-24.6845,0	1/1:196:0,196:0:0:196:6968:-625.643,-59.0019,0	0/1:215:92,123:92:3308:123:4394:-330.302,0,-233.043	1/1:187:0,187:0:0:187:6656:-597.683,-56.2926,0	0/1:93:49,44:49:1764:44:1565:-112.879,0,-130.913	1/1:81:0,81:0:0:81:2904:-260.42,-24.3834,0	1/1:126:0,126:0:0:126:4498:-403.275,-37.9298,0	0/1:84:33,51:33:1188:51:1827:-138.752,0,-81.8001	0/1:105:45,60:45:1620:60:2124:-159.422,0,-113.688	0/1:92:49,43:49:1749:43:1544:-110.914,0,-129.967	1/1:102:0,102:0:0:102:3657:-328.874,-30.7051,0	1/1:59:0,59:0:0:59:2120:-190.752,-17.7608,0	1/1:40:0,40:0:0:40:1436:-129.074,-12.0412,0	0/1:42:24,18:24:864:18:644:-45.5746,0,-65.4174	0/1:133:73,60:73:2594:60:2141:-152.413,0,-193.281	1/1:208:0,208:0:0:208:7398:-663.5,-62.6142,0	0/1:169:91,78:91:3245:78:2789:-199.587,0,-241.317	1/1:176:0,176:0:0:176:6299:-563.538,-52.9813,0	0/1:137:66,71:66:2357:71:2537:-186.127,0,-170.861	0/1:152:69,82:69:2472:82:2946:-218.419,0,-176.847	0/1:399:193,206:193:6895:206:7375:-540.884,0,-499.75	1/1:414:0,414:0:0:414:14822:-1330.56,-124.626,0	1/1:43:0,43:0:0:43:1540:-138.262,-12.9443,0	0/1:375:128,247:128:4557:247:8861:-681.109,0,-296.634	1/1:186:6,180:6:216:180:6457:-559.645,-36.2011,0	1/1:200:2,198:2:72:198:7047:-625.863,-53.3701,0	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.6326	1/1:49:0,49:0:0:49:1737:-156.353,-14.7505,0	1/1:10:0,10:0:0:10:345:-31.3504,-3.0103,0	0/1:21:10,11:10:356:11:396:-29.6192,0,-26.0596	0/1:41:20,21:20:720:21:752:-55.5963,0,-52.7865	0/1:213:102,111:102:3638:111:3972:-292.516,0,-262.161	0/1:149:69,80:69:2465:80:2851:-211.298,0,-177.193	0/1:51:21,30:21:752:30:1080:-81.9574,0,-52.5475	0/1:9:5,4:5:180:4:144:-10.5855,0,-13.8428	0/1:184:75,109:75:2684:109:3912:-295.453,0,-186.38	0/1:42:26,16:26:936:16:575:-39.1395,0,-71.5549	0/1:261:118,143:118:4210:143:5086:-378.218,0,-300.416	0/1:63:31,32:31:1116:32:1148:-84.0476,0,-80.2324	0/1:69:32,37:32:1118:37:1332:-98.9705,0,-80.1406	1/1:202:0,202:0:0:202:7212:-646.71,-60.8081,0	1/1:153:0,153:0:0:153:5460:-490.299,-46.0576,0	0/1:250:115,135:115:4105:135:4841:-359.229,0,-294.04	1/1:123:0,123:0:0:123:4401:-395.076,-37.0267,0	0/1:168:81,87:81:2912:87:3098:-227.929,0,-211.664	0/1:195:61,134:61:2192:134:4820:-374.041,0,-138.786	0/1:30:10,20:10:360:20:690:-53.2117,0,-23.7093	0/1:217:94,123:94:3356:123:4394:-329.793,0,-236.886	1/1:122:0,122:0:0:122:4328:-388.064,-36.7257,0	0/1:20:10,10:10:356:10:356:-26.3289,0,-26.3606	0/1:243:109,134:109:3920:134:4797:-357.207,0,-279.599	0/1:80:41,39:41:1476:39:1396:-101.622,0,-108.993	0/1:23:11,12:11:392:12:432:-32.0485,0,-28.6678	1/1:32:0,32:0:0:32:1152:-103.729,-9.63296,0	1/1:182:0,182:0:0:182:6506:-583.838,-54.7875,0	1/1:162:1,161:1:36:161:5787:-515.917,-45.169,0	0/1:23:9,14:9:324:14:504:-38.6874,0,-22.5785	1/1:182:0,182:0:0:182:6495:-582.809,-54.7875,0	1/1:278:0,278:0:0:278:9976:-895.201,-83.6863,0	0/1:148:85,63:85:3011:63:2268:-159.397,0,-226.434	1/1:123:0,123:0:0:123:4398:-394.955,-37.0267,0	0/1:226:100,126:100:3566:126:4515:-336.471,0,-252.872	0/1:245:176,69:176:6272:69:2465:-147.483,0,-490.39	1/1:72:0,72:0:0:72:2580:-231.4,-21.6742,0	1/1:158:1,157:1:36:157:5587:-498.613,-43.9645,0	0/1:52:33,19:33:1184:19:684:-45.8906,0,-91.1778	0/1:32:12,20:12:428:20:712:-54.5874,0,-29.2096	1/1:132:0,132:0:0:132:4752:-427.163,-39.736,0	0/1:57:37,20:37:1313:20:720:-47.903,0,-101.204	1/1:313:0,313:0:0:313:11155:-1000.81,-94.2224,0	1/1:273:0,273:0:0:273:9771:-875.819,-82.1812,0	0/1:271:139,131:139:4958:131:4693:-340.149,0,-363.475	1/1:174:0,174:0:0:174:6226:-559.518,-52.3792,0	1/1:38:0,38:0:0:38:1364:-122.825,-11.4391,0	1/1:149:0,149:0:0:149:5303:-475.734,-44.8535,0	0/1:199:103,95:103:3655:95:3393:-244.895,0,-269.072	0/1:304:123,181:123:4349:181:6474:-488.551,0,-299.718	0/1:73:38,35:38:1368:35:1256:-91.1076,0,-101.425	0/1:100:50,50:50:1770:50:1796:-131.284,0,-129.239	0/1:47:25,22:25:885:22:792:-56.9147,0,-65.6921	0/1:160:87,73:87:3124:73:2609:-185.12,0,-233.045	1/1:30:0,30:0:0:30:1080:-97.1928,-9.0309,0	1/1:96:0,96:0:0:96:3429:-308.394,-28.8989,0	1/1:88:0,88:0:0:88:3164:-284.184,-26.4906,0	0/1:72:40,32:40:1421:32:1137:-80.7822,0,-106.16	0/1:154:77,77:77:2753:77:2772:-202.962,0,-201.419	0/1:72:47,25:47:1684:25:900:-59.4653,0,-130.017	1/1:206:0,206:0:0:206:7380:-662.429,-62.0122,0	1/1:111:0,111:0:0:111:3992:-356.543,-33.4143,0
chr07	22515971	.	ATTTTAG	ATTTTTAC,ATTTTAC	171446	PASS	AB=0.452129,0.544982;ABP=106.338,94.2402;AC=135,53;AF=0.718085,0.281915;AN=188;AO=5367,2845;CIGAR=1M1I5M1X,6M1X;DP=8233;DPB=9001.29;DPRA=0,1.53674;EPP=11484.2,6102.92;EPPR=3.0103;GTI=4;LEN=8,1;MEANALT=1.82979,2.26667;MQM=50.1941,59.5525;MQMR=57.5;NS=94;NUMALT=2;ODDS=1.75906;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=189129,101706;QR=52;RO=2;RPL=19,9;RPP=11492.9,6102.92;RPPR=3.0103;RPR=5348,2836;RUN=1,1;SAF=5366,2845;SAP=11648.6,6180.85;SAR=1,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,21,25:0:0:21,25:740,883:-132.275,-72.2617,-65.9401,-60.3653,0,-52.8396	1/2:102:0,69,33:0:0:69,33:2453,1188:-296.276,-97.2097,-76.4386,-199.424,0,-189.49	1/2:108:0,66,42:0:0:66,42:2313,1500:-310.006,-122.651,-102.783,-187.708,0,-175.065	1/2:129:0,71,58:0:0:71,58:2505,2068:-371.778,-168.913,-147.54,-203.219,0,-185.759	1/1:28:0,28,0:0:0:28,0:1000,0:-90.0347,-8.42884,0,-90.0347,-8.42884,-90.0347	1/1:77:0,77,0:0:0:77,0:2724,0:-244.754,-23.1793,0,-244.754,-23.1793,-244.754	1/1:149:0,146,2:0:0:146,2:5132,72:-459.39,-43.9504,0,-453.515,-38.0745,-452.913	1/2:120:0,61,59:0:0:61,59:2153,2120:-347.099,-173.229,-154.866,-174.225,0,-156.464	1/1:214:0,214,0:0:0:214,0:7430,0:-666.384,-64.4204,0,-666.384,-64.4204,-666.384	1/2:119:0,55,64:0:0:55,64:1936,2273:-341.571,-185.552,-168.995,-156.37,0,-137.104	1/1:36:0,36,0:0:0:36,0:1296,0:-115.811,-10.8371,0,-115.811,-10.8371,-115.811	1/1:76:0,76,0:0:0:76,0:2711,0:-242.935,-22.8783,0,-242.935,-22.8783,-242.935	1/2:60:0,16,44:0:0:16,44:576,1576:-175.486,-128.882,-124.065,-46.9618,0,-33.7165	1/2:102:0,45,57:0:0:45,57:1591,2039:-295.591,-166.538,-152.991,-129.408,0,-112.249	1/2:70:0,24,44:0:0:24,44:852,1580:-197.638,-128.866,-121.641,-68.8357,0,-55.5904	1/1:50:0,50,0:0:0:50,0:1779,0:-159.501,-15.0515,0,-159.501,-15.0515,-159.501	1/1:77:0,77,0:0:0:77,0:2732,0:-244.462,-23.1793,0,-244.462,-23.1793,-244.462	1/1:68:0,68,0:0:0:68,0:2380,0:-213.321,-20.47,0,-213.321,-20.47,-213.321	1/2:39:0,19,20:0:0:19,20:684,703:-113.183,-57.5504,-51.8309,-55.9874,0,-49.9668	1/2:143:0,78,64:0:0:78,64:2758,2271:-407.792,-185.053,-161.572,-222.811,0,-203.545	1/1:70:0,68,0:0:0:68,0:2391,0:-214.058,-20.47,0,-214.058,-20.47,-214.058	1/2:96:0,22,74:0:0:22,74:788,2648:-280.148,-216.256,-209.634,-64.2483,0,-41.9721	1/1:95:0,91,4:0:0:91,4:3217,144:-288.3,-27.3937,0,-276.567,-15.3023,-275.363	1/2:109:0,41,68:0:0:41,68:1457,2424:-315.582,-197.924,-185.582,-118.011,0,-97.5414	1/2:92:0,43,49:0:0:43,49:1531,1743:-266.416,-142.399,-129.455,-124.372,0,-109.621	1/2:582:0,277,303:0:0:277,303:9711,10816:-1665.73,-881.785,-798.4,-784.015,0,-692.803	1/1:113:0,111,1:0:0:111,1:3901,36:-348.812,-33.4143,0,-345.874,-30.4759,-345.573	1/1:25:0,25,0:0:0:25,0:896,0:-80.7027,-7.52575,0,-80.7027,-7.52575,-80.7027	1/2:162:0,68,94:0:0:68,94:2399,3362:-468.379,-274.475,-254.005,-194.258,0,-165.961	1/1:126:0,122,4:0:0:122,4:4325,144:-387.39,-36.7257,0,-375.64,-24.6162,-374.436	1/1:119:0,118,1:0:0:118,1:4153,36:-371.203,-35.5215,0,-368.283,-32.2438,-367.982	1/2:6:0,1,5:0:0:1,5:36,176:-17.6078,-14.6799,-14.3788,-3.28545,0,-1.7803	1/1:3:0,3,0:0:0:3,0:108,0:-10.0447,-0.90309,0,-10.0447,-0.90309,-10.0447	1/1:7:0,7,0:0:0:7,0:244,0:-22.2495,-2.10721,0,-22.2495,-2.10721,-22.2495	1/2:6:0,1,5:0:0:1,5:21,180:-16.6106,-15.0469,-14.7459,-1.79863,0,-0.293478	1/2:11:0,1,10:0:0:1,10:36,352:-31.9378,-29.0079,-28.7069,-3.2882,0,-0.277898	1/2:238:1,87,149:1:26:87,149:3112,5344:-685.654,-433.912,-409.76,-250.123,0,-207.308	1/2:137:0,74,63:0:0:74,63:2605,2248:-394.548,-183.364,-161.088,-211.538,0,-192.573	1/2:67:0,31,36:0:0:31,36:1096,1296:-195.117,-106.084,-96.7525,-89.3882,0,-78.5511	1/1:1:0,1,0:0:0:1,0:36,0:-3.58648,-0.30103,0,-3.58648,-0.30103,-3.58648	1/2:144:0,73,71:0:0:73,71:2577,2525:-415.255,-206.099,-184.124,-209.51,0,-188.137	1/2:25:0,9,16:0:0:9,16:313,576:-72.2308,-47.3585,-44.6492,-25.2199,0,-20.4034	1/2:92:1,40,51:1:26:40,51:1410,1828:-260.98,-147.121,-137.117,-112.215,0,-98.8987	1/2:76:0,27,49:0:0:27,49:952,1760:-220.976,-143.933,-135.806,-77.3962,0,-62.6458	1/2:84:0,36,47:0:0:36,47:1265,1688:-239.732,-137.682,-126.845,-102.045,0,-87.8961	1/1:112:0,112,0:0:0:112,0:3928,0:-351.179,-33.7154,0,-351.179,-33.7154,-351.179	1/1:68:0,68,0:0:0:68,0:2412,0:-216.43,-20.47,0,-216.43,-20.47,-216.43	1/2:147:0,87,60:0:0:87,60:3057,2148:-423.078,-175.494,-149.305,-247.938,0,-229.877	1/1:75:0,75,0:0:0:75,0:2660,0:-238.205,-22.5773,0,-238.205,-22.5773,-238.205	1/2:95:0,35,59:0:0:35,59:1240,2112:-272.771,-172.167,-161.631,-100.601,0,-82.84	1/2:66:0,31,35:0:0:31,35:1104,1241:-190.909,-101.437,-92.1049,-89.8269,0,-79.2908	1/2:16:0,5,11:0:0:5,11:169,396:-45.8211,-32.6714,-31.1663,-13.4862,0,-10.1749	1/2:107:0,48,58:0:0:48,58:1697,2064:-305.781,-168.15,-153.7,-137.631,0,-120.172	1/1:38:0,38,0:0:0:38,0:1329,0:-118.55,-11.4391,0,-118.55,-11.4391,-118.55	1/2:10:0,3,7:0:0:3,7:104,237:-27.9877,-19.5518,-18.6488,-8.77944,0,-6.67223	1/2:98:0,47,51:0:0:47,51:1655,1836:-284.299,-150.14,-135.991,-134.514,0,-119.162	1/2: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chr07	22515994	.	TAATC	TAGTC,TATC	175471	PASS	AB=0.464842,0.529076;ABP=59.5049,41.6511;AC=135,53;AF=0.718085,0.281915;AN=188;AO=5573,2799;CIGAR=2M1X2M,1M1D3M;DP=8428;DPB=7865;DPRA=0,1.43999;EPP=12095.9,6080.96;EPPR=16.0391;GTI=3;LEN=1,1;MEANALT=2.04255,2.38983;MQM=50.2675,59.6152;MQMR=60;NS=94;NUMALT=2;ODDS=0.60397;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=199329,99488;QR=214;RO=6;RPL=5573,2796;RPP=12104.6,6054.93;RPPR=16.0391;RPR=0,3;RUN=1,1;SAF=5572,2796;SAP=12095.9,6054.93;SAR=1,3;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/2:47:0,22,25:0:0:22,25:777,896:-136.353,-73.4346,-66.8119,-63.2732,0,-55.7475	1/2:100:0,67,29:0:0:67,29:2400,1012:-277.213,-82.3022,-62.1332,-194.905,0,-186.176	1/2:112:0,71,41:0:0:71,41:2535,1453:-324.502,-118.722,-97.3486,-206.135,0,-193.792	1/2:128:0,72,56:0:0:72,56:2588,1996:-372.813,-163.052,-141.378,-210.118,0,-193.26	1/1:32:0,32,0:0:0:32,0:1148,0:-103.3,-9.63296,0,-103.3,-9.63296,-103.3	1/1:79:0,79,0:0:0:79,0:2832,0:-254.309,-23.7814,0,-254.309,-23.7814,-254.309	1/1:155:0,155,0:0:0:155,0:5530,0:-495.484,-46.6597,0,-495.484,-46.6597,-495.484	1/2:125:0,63,61:0:0:63,61:2248,2160:-357.84,-175.973,-157.008,-181.971,0,-163.608	1/1:215:0,215,0:0:0:215,0:7698,0:-689.496,-64.7215,0,-689.496,-64.7215,-689.496	1/2:117:0,57,60:0:0:57,60:2046,2094:-335.641,-170.392,-153.233,-165.601,0,-147.539	1/1:37:0,36,0:0:0:36,0:1296,0:-115.747,-10.8371,0,-115.747,-10.8371,-115.747	1/1:80:0,80,0:0:0:80,0:2848,0:-255.386,-24.0824,0,-255.386,-24.0824,-255.386	1/2:57:0,16,41:0:0:16,41:572,1468:-166.321,-120.069,-115.253,-46.6077,0,-34.2655	1/2:103:0,46,57:0:0:46,57:1648,2021:-298.623,-164.946,-151.098,-134.033,0,-116.874	1/2:76:0,29,46:0:0:29,46:1031,1639:-217.06,-133.523,-124.793,-83.5566,0,-69.7092	1/1:51:0,51,0:0:0:51,0:1824,0:-163.711,-15.3525,0,-163.711,-15.3525,-163.711	1/1:78:0,78,0:0:0:78,0:2783,0:-249.345,-23.4803,0,-249.345,-23.4803,-249.345	1/1:69:0,69,0:0:0:69,0:2463,0:-220.693,-20.7711,0,-220.693,-20.7711,-220.693	1/2:41:0,21,19:0:0:21,19:756,680:-116.934,-55.4522,-49.1306,-61.483,0,-55.7634	1/2:141:0,76,65:0:0:76,65:2728,2321:-410.243,-189.529,-166.65,-221.071,0,-201.504	1/1:73:0,71,0:0:0:71,0:2540,0:-227.805,-21.3731,0,-227.805,-21.3731,-227.805	1/2:92:0,22,70:0:0:22,70:788,2492:-267.336,-203.444,-196.821,-64.2483,0,-43.1762	1/1:98:0,96,2:0:0:96,2:3413,72:-305.843,-28.8989,0,-299.968,-22.6642,-299.366	1/2:108:0,41,67:0:0:41,67:1476,2382:-313.797,-194.446,-182.104,-119.707,0,-99.5379	1/2:99:0,48,51:0:0:48,51:1709,1809:-286.195,-147.725,-133.276,-138.824,0,-123.472	1/2:595:0,285,306:0:0:285,306:10230,10824:-1709.01,-881.551,-795.757,-827.511,0,-735.395	1/1:121:0,119,2:0:0:119,2:4276,72:-382.31,-35.8226,0,-376.435,-29.5879,-375.833	1/1:26:0,26,0:0:0:26,0:932,0:-83.9306,-7.82678,0,-83.9306,-7.82678,-83.9306	1/2:160:0,69,91:0:0:69,91:2480,3246:-465.344,-264.95,-244.179,-200.75,0,-173.357	1/1:132:0,128,4:0:0:128,4:4574,144:-409.544,-38.5318,0,-397.794,-26.4223,-396.59	1/1:122:0,119,1:0:0:119,1:4248,32:-379.793,-35.8226,0,-377.222,-33.246,-376.921	1/2:6:0,1,5:0:0:1,5:36,172:-17.2421,-14.3128,-14.0118,-3.28545,0,-1.7803	1/1:3:0,3,0:0:0:3,0:108,0:-10.0447,-0.90309,0,-10.0447,-0.90309,-10.0447	1/1:7:0,7,0:0:0:7,0:252,0:-22.9635,-2.10721,0,-22.9635,-2.10721,-22.9635	1/2:6:0,1,5:0:0:1,5:32,180:-17.6153,-15.0469,-14.7459,-2.89465,0,-1.3895	1/2:11:0,1,10:0:0:1,10:36,343:-31.121,-28.1903,-27.8892,-3.2882,0,-0.277898	1/2:242:0,93,147:0:0:93,147:3331,5251:-698.16,-428.088,-400.092,-270.084,0,-225.832	1/2:137:0,76,60:0:0:76,60:2728,2147:-396.618,-174.877,-151.999,-221.759,0,-203.697	1/2:67:0,31,36:0:0:31,36:1112,1274:-194.555,-104.102,-94.77,-90.8085,0,-79.9714	1/1:1:0,1,0:0:0:1,0:32,0:-3.19457,-0.30103,0,-3.19457,-0.30103,-3.19457	1/2:149:0,78,71:0:0:78,71:2789,2535:-433.37,-207.028,-183.547,-226.698,0,-205.325	1/2:26:0,8,16:0:0:8,16:284,576:-70.1357,-47.072,-44.6638,-23.1239,0,-18.3074	1/2:98:0,46,52:0:0:46,52:1638,1824:-281.558,-148.773,-134.925,-133.137,0,-117.484	1/2:77:0,30,47:0:0:30,47:1072,1667:-222.927,-136.168,-127.137,-87.113,0,-72.9646	1/2:84:0,37,47:0:0:37,47:1324,1660:-242.649,-135.518,-124.38,-107.485,0,-93.337	1/1:119:0,119,0:0:0:119,0:4262,0:-380.448,-35.8226,0,-380.448,-35.8226,-380.448	1/1:67:0,65,0:0:0:65,0:2332,0:-209.3,-19.567,0,-209.3,-19.567,-209.3	1/2:153:0,93,59:0:0:93,59:3305,2111:-439.953,-172.217,-144.221,-267.842,0,-250.081	1/1:76:0,75,0:0:0:75,0:2672,0:-239.139,-22.5773,0,-239.139,-22.5773,-239.139	1/2:95:1,36,57:1:36:36,57:1281,2026:-265.789,-162.159,-154.26,-101.026,0,-86.8049	1/2:73:0,37,36:0:0:37,36:1320,1279:-211.439,-104.551,-93.4128,-107.243,0,-96.4063	1/2:16:0,5,11:0:0:5,11:169,392:-45.4596,-32.3087,-30.8036,-13.4862,0,-10.1749	1/2:110:0,53,57:0:0:53,57:1877,2024:-317.473,-165.164,-149.209,-152.663,0,-135.504	1/1:38:0,37,0:0:0:37,0:1328,0:-118.335,-11.1381,0,-118.335,-11.1381,-118.335	1/2:10:0,3,7:0:0:3,7:108,252:-29.7093,-20.9217,-20.0187,-9.14675,0,-7.03954	1/2:102:0,48,54:0:0:48,54:1724,1909:-295.836,-155.825,-141.375,-140.367,0,-124.112	1/2:62:2,27,33:2:7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chr07	22516022	.	T	C	274719	PASS	AB=0.484041;ABP=29.0709;AC=134;AF=0.712766;AN=188;AO=13551;CIGAR=1X;DP=19659;DPB=19659;DPRA=0;EPP=29411.3;EPPR=13229.5;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.975;MQMR=59.9839;NS=94;NUMALT=1;ODDS=1.13716;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=482039;QR=218925;RO=6103;RPL=2;RPP=29411.3;RPPR=13229.5;RPR=13549;RUN=1;SAF=0;SAP=29428.6;SAR=13551;SRF=0;SRP=13255.5;SRR=6103;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:146:73,73:73:2620:73:2534:-184.36,0,-192.097	0/1:143:63,80:63:2253:80:2857:-214.319,0,-159.984	0/1:368:173,195:173:6208:195:6918:-511.907,0,-448.036	0/1:483:249,234:249:8956:234:8347:-605.839,0,-660.617	1/1:201:0,201:0:0:201:7174:-645.716,-60.507,0	1/1:72:0,72:0:0:72:2530:-227.948,-21.6742,0	1/1:231:1,230:1:36:230:8171:-731.809,-65.9397,0	0/1:359:191,168:191:6864:168:5937:-426.368,0,-509.756	1/1:242:0,242:0:0:242:8578:-772.018,-72.8493,0	0/1:187:101,86:101:3605:86:3080:-221.136,0,-268.349	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	1/1:115:0,115:0:0:115:4085:-367.837,-34.6185,0	0/1:82:48,34:48:1724:34:1208:-84.3416,0,-130.761	0/1:67:28,39:28:1004:39:1396:-105.77,0,-70.5069	0/1:78:50,28:50:1800:28:985:-65.4812,0,-138.802	1/1:47:0,47:0:0:47:1671:-150.677,-14.1484,0	1/1:74:0,74:0:0:74:2633:-237.216,-22.2762,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:27:11,16:11:396:16:568:-43.3241,0,-27.8549	0/1:713:322,391:322:11560:391:13921:-1038.03,0,-825.618	1/1:436:0,436:0:0:436:15488:-1393.59,-131.249,0	0/1:584:388,196:388:13932:196:7003:-454.527,0,-1077.84	1/1:497:0,497:0:0:497:17680:-1589.63,-149.612,0	0/1:183:78,105:78:2808:105:3726:-280.452,0,-197.87	0/1:198:94,104:94:3380:104:3736:-276.836,0,-244.81	0/1:635:335,300:335:12002:300:10713:-772.923,0,-888.868	1/1:776:2,774:2:72:774:27561:-2472.84,-226.763,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:676:326,350:326:11711:350:12484:-919.898,0,-850.185	1/1:313:7,306:7:252:306:10884:-956.432,-71.1934,0	1/1:449:1,448:1:36:448:15887:-1425.93,-131.564,0	0/1:22:15,7:15:532:7:244:-15.6768,0,-41.5904	1/1:63:1,62:1:36:62:2198:-194.484,-15.3666,0	1/1:9:0,9:0:0:9:309:-28.1407,-2.70927,0	0/1:16:10,6:10:360:6:212:-14.6083,0,-27.9278	0/1:48:12,36:12:428:36:1277:-100.783,0,-24.4094	0/1:208:131,77:131:4687:77:2716:-182.066,0,-359.376	0/1:260:152,108:152:5448:108:3857:-269.058,0,-412.18	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:458:216,242:216:7756:242:8654:-640.982,0,-560.196	0/1:26:13,13:13:468:13:460:-33.9086,0,-34.6329	0/1:496:223,273:223:7974:273:9755:-728.589,0,-568.369	0/1:69:45,24:45:1611:24:852:-56.2293,0,-124.508	0/1:57:30,27:30:1080:27:963:-69.8272,0,-80.3545	1/1:246:0,246:0:0:246:8755:-787.929,-74.0534,0	1/1:294:1,293:1:36:293:10422:-934.284,-84.9045,0	0/1:415:222,193:222:7949:193:6906:-496.665,0,-590.504	1/1:276:0,276:0:0:276:9802:-882.106,-83.0843,0	0/1:342:138,204:138:4952:204:7261:-550.59,0,-342.876	0/1:367:187,180:187:6689:180:6424:-467.769,0,-491.607	0/1:29:13,16:13:460:16:576:-43.4451,0,-33.0055	0/1:175:98,77:98:3520:77:2751:-195.151,0,-264.328	1/1:398:0,396:0:0:396:14132:-1271.36,-119.208,0	0/1:22:14,8:14:491:8:279:-18.8249,0,-37.8985	0/1:401:172,229:172:6176:229:8162:-613.882,0,-435.223	0/1:134:65,69:65:2340:69:2443:-179.788,0,-170.521	0/1:40:26,14:26:936:14:496:-32.9331,0,-72.5183	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:176:2,174:2:72:174:6149:-546.67,-46.1446,0	1/1:66:1,65:1:36:65:2318:-205.281,-16.2697,0	0/1:38:15,23:15:536:23:828:-63.405,0,-37.1357	1/1:89:0,89:0:0:89:3162:-284.804,-26.7917,0	1/1:507:4,503:4:144:503:17893:-1596.67,-139.309,0	0/1:179:96,83:96:3436:83:2928:-209.871,0,-255.569	1/1:200:1,199:1:36:199:7086:-634.205,-56.6077,0	0/1:505:264,241:264:9480:241:8553:-617.749,0,-701.134	0/1:372:229,142:229:8220:142:5070:-344.403,0,-627.61	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	1/1:119:1,118:1:36:118:4193:-373.525,-32.2243,0	0/1:59:31,28:31:1112:28:989:-71.5621,0,-82.6306	0/1:33:10,23:10:360:23:828:-64.9101,0,-22.8103	1/1:297:2,295:2:72:295:10527:-940.51,-82.5692,0	0/1:209:107,102:107:3840:102:3644:-265.25,0,-282.88	1/1:438:0,438:0:0:438:15542:-1398.5,-131.851,0	1/1:347:0,346:0:0:346:12338:-1109.89,-104.156,0	0/1:286:159,127:159:5699:127:4548:-323.392,0,-426.932	1/1:165:2,163:2:72:163:5771:-512.669,-42.8332,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:274:0,273:0:0:273:9717:-874.124,-82.1812,0	0/1:409:194,215:194:6957:215:7677:-567.844,0,-503.025	0/1:562:290,272:290:10409:272:9671:-701.15,0,-767.545	0/1:70:43,27:43:1548:27:955:-65.1928,0,-118.541	0/1:86:37,49:37:1324:49:1752:-132.072,0,-93.5735	0/1:60:37,23:37:1332:23:824:-56.4215,0,-102.121	0/1:123:74,49:74:2655:49:1719:-117.965,0,-202.168	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	1/1:57:0,57:0:0:57:1967:-177.301,-17.1587,0	1/1:83:0,83:0:0:83:2925:-263.486,-24.9855,0	0/1:46:29,17:29:1036:17:596:-40.1204,0,-79.7065	0/1:61:39,22:39:1385:22:769:-51.1658,0,-106.584	0/1:117:81,36:81:2900:36:1268:-79.1995,0,-226.015	1/1:59:0,59:0:0:59:2088:-188.188,-17.7608,0	1/1:77:0,77:0:0:77:2689:-242.252,-23.1793,0
chr07	22576331	.	C	T	47027.8	PASS	AB=0.486949;ABP=11.5689;AC=54;AF=0.287234;AN=188;AO=2831;CIGAR=1X;DP=9648;DPB=9648;DPRA=1.22225;EPP=6150.45;EPPR=14786.4;GTI=0;LEN=1;MEANALT=1.01538;MQM=59.9753;MQMR=59.9891;NS=94;NUMALT=1;ODDS=3.24675;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101088;QR=242702;RO=6816;RPL=2830;RPP=6141.77;RPPR=14786.4;RPR=1;RUN=1;SAF=2830;SAP=6141.77;SAR=1;SRF=6816;SRP=14803.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:19,5:19:684:5:180:-9.32734,0,-54.6656	0/1:140:65,75:65:2327:75:2683:-199.57,0,-167.545	0/1:84:45,39:45:1620:39:1400:-101.013,0,-120.803	0/1:125:65,60:65:2312:60:2152:-156.318,0,-170.712	0/0:40:39,1:39:1396:1:36:0,-8.44292,-122.341	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:107:106,1:106:3749:1:36:0,-28.6119,-334.011	0/1:207:124,83:124:4383:83:2977:-205.849,0,-332.33	0/0:69:69,0:69:2424:0:0:0,-20.7711,-218.413	0/1:116:72,44:72:2569:44:1545:-104.419,0,-196.539	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.242	0/0:63:63,0:63:2227:0:0:0,-18.9649,-200.694	0/1:104:57,47:57:1990:47:1660:-118.378,0,-148.063	0/1:222:109,113:109:3860:113:4026:-295.7,0,-280.768	0/1:86:49,37:49:1760:37:1323:-93.4834,0,-132.795	0/0:89:89,0:89:3153:0:0:0,-26.7917,-283.996	0/0:129:128,1:128:4559:1:36:0,-35.2346,-406.877	0/0:115:115,0:115:4080:0:0:0,-34.6184,-367.387	0/1:56:32,24:32:1148:24:851:-60.0518,0,-86.7722	0/1:146:87,59:87:3108:59:2112:-146.399,0,-235.997	0/0:124:124,0:124:4414:0:0:0,-37.3277,-397.433	0/1:98:30,68:30:1067:68:2431:-189.544,0,-66.8403	0/0:77:77,0:77:2753:0:0:0,-23.1793,-248.008	0/1:71:50,21:50:1763:21:752:-46.6331,0,-137.58	0/1:74:36,38:36:1284:38:1327:-97.4508,0,-93.5872	0/1:275:126,148:126:4460:148:5265:-391.144,0,-318.728	0/0:196:196,0:196:7001:0:0:0,-59.0019,-630.154	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:154:76,78:76:2719:78:2799:-205.754,0,-198.594	0/0:149:148,1:148:5304:1:36:0,-41.2552,-473.896	0/0:89:87,2:87:3097:2:72:0,-19.9549,-272.12	0/1:10:1,9:1:36:9:316:-25.7686,0,-0.587975	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2579	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:24:10,14:10:360:14:495:-37.6583,0,-25.5196	0/1:215:119,96:119:4228:96:3408:-242.213,0,-315.979	0/1:233:139,94:139:4956:94:3369:-233.284,0,-376.049	0/1:95:54,41:54:1931:41:1472:-104.178,0,-145.468	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:134:68,66:68:2422:66:2357:-172.049,0,-177.897	0/1:41:20,21:20:704:21:752:-55.664,0,-51.3423	0/1:146:65,81:65:2309:81:2898:-217.1,0,-164.119	0/1:112:57,55:57:2035:55:1980:-144.759,0,-149.706	0/1:77:35,42:35:1252:42:1492:-111.395,0,-89.8058	0/0:111:111,0:111:3938:0:0:0,-33.4143,-354.612	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.57	0/1:200:118,82:118:4219:82:2933:-203.998,0,-319.684	0/0:156:156,0:156:5553:0:0:0,-46.9607,-499.896	0/1:151:83,68:83:2942:68:2427:-173.23,0,-219.559	0/1:111:46,65:46:1644:65:2321:-175.734,0,-114.834	0/1:16:7,9:7:244:9:320:-24.3259,0,-17.4829	0/1:132:62,70:62:2196:70:2491:-184.705,0,-158.167	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.006	0/1:19:10,9:10:356:9:319:-23.3318,0,-26.6617	0/1:137:67,70:67:2400:70:2511:-185,0,-175.016	0/1:14:7,7:7:244:7:252:-18.8145,0,-18.085	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:100:100,0:100:3561:0:0:0,-30.103,-320.698	0/0:184:182,2:182:6503:2:72:0,-48.5528,-578.146	0/1:15:5,10:5:172:10:360:-28.2289,0,-11.3025	0/0:148:147,1:147:5243:1:36:0,-40.9542,-468.408	0/0:222:222,0:222:7911:0:0:0,-66.8287,-712.003	0/1:101:58,43:58:2057:43:1548:-109.209,0,-154.996	0/0:79:78,1:78:2741:1:36:0,-20.1831,-243.333	0/1:119:66,53:66:2353:53:1880:-133.648,0,-176.205	0/1:77:15,62:15:536:62:2205:-175.534,0,-25.3955	0/0:72:71,1:71:2517:1:36:0,-18.0759,-223.183	0/0:82:82,0:82:2924:0:0:0,-24.6845,-263.396	0/1:136:77,59:77:2740:59:2115:-149.661,0,-205.848	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:96:96,0:96:3431:0:0:0,-28.8989,-308.995	0/1:68:29,39:29:1044:39:1404:-106.189,0,-73.8048	0/0:166:166,0:166:5922:0:0:0,-49.971,-533.087	0/0:113:113,0:113:4029:0:0:0,-34.0164,-362.798	0/1:142:73,69:73:2572:69:2480:-180.707,0,-188.983	0/0:176:174,2:174:6212:2:72:0,-46.1446,-552.339	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:94:94,0:94:3348:0:0:0,-28.2968,-301.536	0/1:104:50,54:50:1791:54:1927:-142.399,0,-130.165	0/1:164:82,82:82:2917:82:2940:-215.465,0,-213.396	0/1:140:70,70:70:2512:70:2502:-183.285,0,-184.188	0/1:143:74,69:74:2636:69:2456:-178.248,0,-194.438	0/1:129:52,77:52:1833:77:2752:-209.088,0,-126.416	0/1:183:110,73:110:3916:73:2617:-180.689,0,-297.544	0/0:58:58,0:58:2066:0:0:0,-17.4597,-186.21	0/0:91:91,0:91:3251:0:0:0,-27.3937,-292.811	0/0:121:121,0:121:4286:0:0:0,-36.4246,-385.916	0/1:97:46,51:46:1648:51:1828:-135.601,0,-119.409	0/1:182:87,95:87:3111:95:3364:-248.06,0,-225.429	0/1:93:34,59:34:1224:59:2106:-161.813,0,-82.4713	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:110:109,1:109:3878:1:36:0,-29.515,-345.617
chr07	22576376	.	T	A	34288.1	PASS	AB=0.501226;ABP=3.06355;AC=50;AF=0.268817;AN=186;AO=2056;CIGAR=1X;DP=6814;DPB=6814;DPRA=1.66331;EPP=4467.56;EPPR=10302.3;GTI=1;LEN=1;MEANALT=1.03448;MQM=54.1877;MQMR=59.5152;NS=93;NUMALT=1;ODDS=0.275572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73605;QR=170051;RO=4755;RPL=0;RPP=4467.56;RPPR=10302.3;RPR=2056;RUN=1;SAF=0;SAP=4467.56;SAR=2056;SRF=0;SRP=10328.4;SRR=4755;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:31,25:31:1112:25:896:-63.7938,0,-83.5255	0/1:65:33,32:33:1180:32:1148:-83.2882,0,-86.7508	0/1:255:124,131:124:4452:131:4695:-344.416,0,-324.01	0/1:207:128,79:128:4596:79:2827:-191.861,0,-351.457	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.034	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.8938	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.706	0/1:100:61,39:61:2173:39:1396:-94.3678,0,-165.71	0/0:93:93,0:93:3329:0:0:0,-27.9958,-299.755	0/1:96:34,62:34:1220:62:2232:-171.847,0,-81.2056	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.61	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.05	0/1:72:40,32:40:1436:32:1143:-81.2188,0,-107.847	0/1:43:22,21:22:792:21:752:-54.8352,0,-58.6568	0/1:78:33,45:33:1188:45:1620:-122.277,0,-83.7483	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.558	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.501	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.103	0/1:13:3,10:3:108:10:356:-28.0212,0,-6.16178	0/1:65:26,39:26:932:39:1404:-106.985,0,-64.1356	0/0:127:126,1:126:4513:1:36:0,-34.6376,-402.702	0/1:105:44,61:44:1565:61:2188:-165.425,0,-109.471	0/0:94:93,1:93:3321:1:36:0,-24.7011,-295.497	0/1:13:7,6:7:248:6:216:-15.8491,0,-18.7508	0/1:76:49,27:49:1760:27:972:-64.7962,0,-135.796	0/1:173:80,93:80:2857:93:3336:-247.769,0,-205.286	0/0:159:159,0:159:5697:0:0:0,-47.8638,-512.784	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.433	0/1:148:66,82:66:2338:82:2925:-218.627,0,-166.122	0/0:107:103,4:103:3670:4:144:0,-18.9155,-317.163	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.923	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7224	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.2993	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.8332	0/1:20:15,5:15:525:5:180:-10.4899,0,-41.4057	0/1:172:87,84:87:3132:84:3020:-219.891,0,-228.728	0/1:111:59,52:59:2124:52:1855:-133.284,0,-158.005	0/1:30:17,13:17:612:13:445:-31.1107,0,-46.3512	.:.:.:.:.:.:.:.	0/1:104:45,59:45:1597:59:2096:-157.075,0,-112.677	0/1:20:9,11:9:324:11:395:-29.1374,0,-23.4853	0/1:134:74,60:74:2660:60:2144:-152.486,0,-199.275	0/1:57:27,30:27:972:30:1080:-80.1261,0,-70.6298	0/1:65:29,36:29:1044:36:1284:-96.117,0,-74.7055	0/0:84:84,0:84:2988:0:0:0,-25.2865,-268.763	0/0:105:105,0:105:3753:0:0:0,-31.6081,-337.932	0/1:164:77,87:77:2730:87:3111:-230.366,0,-196.539	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.514	0/1:64:32,32:32:1152:32:1152:-84.3813,0,-84.592	0/1:60:36,24:36:1288:24:864:-59.9408,0,-98.1618	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:85:46,39:46:1656:39:1404:-100.538,0,-123.688	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.934	0/1:7:4,3:4:144:3:108:-7.92171,0,-11.1927	0/1:125:66,59:66:2368:59:2093:-150.588,0,-175.721	0/1:42:21,21:21:756:21:752:-55.1298,0,-55.7216	0/1:4:2,2:2:72:2:72:-5.5726,0,-5.6326	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:51:49,2:49:1764:2:72:0,-8.5255,-152.194	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.461	0/1:4:2,2:2:72:2:68:-5.25014,0,-5.62767	0/0:90:90,0:90:3206:0:0:0,-27.0927,-288.736	0/0:185:184,1:184:6567:1:36:0,-52.0949,-587.238	0/1:45:28,17:28:989:17:612:-41.4978,0,-75.7664	0/0:103:102,1:102:3668:1:36:0,-27.4104,-326.684	0/1:144:72,72:72:2592:72:2577:-187.74,0,-190.161	0/1:111:38,73:38:1330:73:2593:-199.706,0,-86.579	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.456	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.538	0/1:44:29,15:29:1040:15:540:-35.6092,0,-80.6397	0/1:22:14,8:14:481:8:288:-19.5387,0,-36.9655	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.42	0/1:74:35,39:35:1218:39:1396:-102.663,0,-87.6316	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.002	0/0:139:138,1:138:4956:1:36:0,-38.2475,-442.561	0/1:111:56,55:56:1982:55:1968:-143.484,0,-145.205	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1448	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.332	0/1:127:61,66:61:2136:66:2367:-173.685,0,-154.231	0/1:111:60,51:60:2148:51:1828:-131.262,0,-160.151	0/1:38:23,15:23:828:15:535:-36.9826,0,-63.405	0/1:77:44,32:44:1565:32:1148:-80.2807,0,-117.893	0/1:40:23,17:23:828:17:612:-43.3277,0,-62.8006	0/1:136:63,73:63:2260:73:2628:-195.348,0,-162.292	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.375	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.684	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.473	0/1:16:6,10:6:216:10:360:-27.711,0,-14.9694	0/1:66:25,41:25:900:41:1472:-112.592,0,-61.453	0/1:83:26,57:26:932:57:2035:-157.961,0,-59.2087	0/0:116:115,1:115:4091:1:21:0,-32.8196,-366.177	0/0:85:84,0:84:3009:0:0:0,-25.2865,-270.582
chr07	22636722	.	A	G	34895.1	PASS	AB=0.559095;ABP=127.741;AC=54;AF=0.287234;AN=188;AO=2316;CIGAR=1X;DP=6574;DPB=6574;DPRA=1.32016;EPP=5032.14;EPPR=9244.8;GTI=4;LEN=1;MEANALT=1.03175;MQM=37.7781;MQMR=59.3416;NS=94;NUMALT=1;ODDS=3.25606;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82636;QR=151070;RO=4256;RPL=0;RPP=5032.14;RPPR=9244.8;RPR=2316;RUN=1;SAF=2316;SAP=5032.14;SAR=0;SRF=4256;SRP=9244.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:22,13:22:777:13:464:-26.6887,0,-59.6967	0/1:49:23,26:23:820:26:928:-59.9834,0,-59.3511	0/1:71:30,41:30:1064:41:1452:-96.3608,0,-74.6976	0/1:199:70,129:70:2492:129:4600:-331.253,0,-164.629	0/0:70:70,0:70:2473:0:0:0,-21.0721,-221.528	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9824	0/0:99:97,2:97:3448:2:72:0,-23.2971,-303.999	0/1:39:17,22:17:604:22:772:-50.7177,0,-42.8974	0/0:67:67,0:67:2376:0:0:0,-20.169,-213.976	0/1:63:41,22:41:1453:22:784:-47.7525,0,-112.078	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.554	0/0:98:98,0:98:3472:0:0:0,-29.5009,-312.624	0/1:93:42,51:42:1477:51:1832:-120.149,0,-105.16	0/1:36:17,19:17:608:19:680:-45.7208,0,-44.2043	0/1:61:37,24:37:1320:24:856:-54.9459,0,-100.739	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.567	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0592	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6153	0/1:39:13,26:13:455:26:926:-62.7207,0,-29.5169	0/1:157:80,77:80:2825:77:2752:-184.864,0,-207.141	0/0:120:120,0:120:4257:0:0:0,-36.1236,-383.044	0/1:55:14,41:14:504:41:1460:-110.638,0,-29.1357	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.709	0/1:62:22,40:22:776:40:1420:-100.11,0,-51.4806	0/1:66:36,30:36:1284:30:1072:-69.4485,0,-95.9519	0/1:154:65,89:65:2305:89:3188:-231.396,0,-161.325	0/0:144:144,0:144:5121:0:0:0,-43.3483,-460.639	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.655	0/1:258:107,151:107:3828:151:5377:-388.86,0,-267.035	0/0:81:77,4:77:2721:4:144:0,-12.2724,-232.759	0/0:71:69,2:69:2441:2:72:0,-14.8389,-213.385	0/1:7:3,4:3:108:4:144:-10.4607,0,-7.73264	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:14:6,8:6:212:8:284:-18.1443,0,-15.2104	0/1:52:23,29:23:816:29:1040:-68.6537,0,-58.0208	0/1:170:94,76:94:3301:76:2712:-184.737,0,-246.028	0/1:80:33,47:33:1176:47:1680:-116.077,0,-82.0547	0/1:52:25,27:25:883:27:972:-59.8729,0,-64.1129	0/1:12:5,7:5:176:7:252:-17.0031,0,-12.5618	0/1:104:54,50:54:1909:50:1784:-114.904,0,-140.671	0/1:40:16,24:16:560:24:856:-60.3182,0,-38.6875	0/1:187:84,103:84:2981:103:3648:-247.458,0,-212.149	0/1:55:28,27:28:996:27:968:-66.1863,0,-73.363	0/1:47:23,24:23:824:24:855:-59.2044,0,-60.3165	0/0:91:91,0:91:3220:0:0:0,-27.3937,-289.949	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.075	0/1:92:43,49:43:1525:49:1752:-119.416,0,-109.846	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.381	0/1:103:33,70:33:1188:70:2496:-180.811,0,-75.7191	0/1:114:45,69:45:1608:69:2452:-178.663,0,-110.689	0/1:2:1,1:1:36:1:36:-2.82154,0,-2.99621	0/1:103:44,58:44:1549:58:2076:-135.625,0,-108.339	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:10:3,7:3:108:7:252:-17.7651,0,-7.06487	0/1:174:87,87:87:3078:87:3116:-204.008,0,-224.828	0/1:47:15,32:15:521:32:1148:-84.1139,0,-33.0617	0/0:12:11,1:11:396:1:36:0,-0.131665,-32.5021	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.063	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.424	1/1:2:0,2:0:0:2:72:-6.50484,-0.60206,0	0/0:74:74,0:74:2632:0:0:0,-22.2762,-237.067	0/0:88:88,0:88:3101:0:0:0,-26.4906,-279.281	0/1:50:13,37:13:468:37:1312:-95.2964,0,-27.3974	0/0:70:69,1:69:2460:1:36:0,-17.6485,-218.21	0/1:153:54,99:54:1916:99:3537:-253.005,0,-126.497	0/1:85:26,59:26:913:59:2120:-153.585,0,-56.8965	0/0:48:47,1:47:1680:1:36:0,-11.1033,-148.091	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.571	0/1:38:18,20:18:640:20:720:-50.0632,0,-46.4902	0/1:5:3,2:3:108:2:72:-4.99969,0,-8.57002	0/0:53:52,1:52:1840:1:36:0,-12.7084,-162.587	0/1:67:34,33:34:1200:33:1164:-74.9585,0,-88.119	0/0:92:92,0:92:3272:0:0:0,-27.6948,-294.454	0/0:68:68,0:68:2416:0:0:0,-20.47,-217.682	0/1:81:37,44:37:1320:44:1564:-103.346,0,-94.7185	0/0:53:52,1:52:1837:1:36:0,-12.7084,-162.248	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:81:80,1:80:2783:1:36:0,-21.0373,-247.338	0/1:74:38,36:38:1345:36:1288:-81.9194,0,-99.051	0/1:138:56,81:56:1984:81:2888:-203.925,0,-137.239	0/1:46:24,22:24:848:22:788:-53.3098,0,-62.7899	0/1:71:35,36:35:1256:36:1266:-86.1725,0,-91.9553	0/1:52:21,31:21:747:31:1112:-79.9924,0,-51.8945	0/1:120:54,66:54:1928:66:2360:-166.077,0,-137.652	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1192	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.39	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.577	0/1:42:19,23:19:680:23:824:-56.0297,0,-48.8752	0/1:103:53,50:53:1883:50:1788:-117.604,0,-138.724	0/1:85:25,60:25:888:60:2135:-156.615,0,-54.6515	0/0:107:106,1:106:3745:1:36:0,-28.7866,-332.832	0/0:103:103,0:103:3668:0:0:0,-31.0061,-330.272
chr07	22636743	.	CAACA	GAACA	90406.3	PASS	AB=0.437102;ABP=148.607;AC=134;AF=0.712766;AN=188;AO=4352;CIGAR=1X4M;DP=6784;DPB=6784.8;DPRA=36.4624;EPP=8530.21;EPPR=4802.2;GTI=4;LEN=1;MEANALT=1.49462;MQM=59.4341;MQMR=37.8335;NS=94;NUMALT=1;ODDS=2.90147;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=18;PRO=0.5;QA=154735;QR=81594;RO=2379;RPL=103;RPP=8579.79;RPPR=4827.35;RPR=4249;RUN=1;SAF=4346;SAP=9401.21;SAR=6;SRF=2376;SRP=5142.92;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:13,24:13:450:24:851:-65.3941,0,-24.9668	0/1:54:27,26:27:902:26:911:-66.0957,0,-58.7283	0/1:74:42,32:42:1418:32:1131:-79.8206,0,-94.6757	0/1:206:133,72:133:4594:72:2575:-170.001,0,-331.532	1/1:71:0,71:0:0:71:2486:-223.447,-21.3731,0	1/1:23:0,23:0:0:23:824:-74.4657,-6.92369,0	1/1:105:4,101:4:118:101:3611:-314.495,-20.9973,0	0/1:41:22,19:22:752:19:680:-49.134,0,-49.3167	1/1:69:0,69:0:0:69:2467:-222.143,-20.7711,0	0/1:66:26,39:26:886:39:1378:-104.526,0,-55.8725	1/1:40:0,39:0:0:39:1387:-124.756,-11.7402,0	1/1:100:0,100:0:0:100:3513:-316.284,-30.103,0	0/1:90:52,38:52:1804:38:1356:-95.1878,0,-120.442	0/1:37:20,16:20:707:16:559:-39.4886,0,-47.8737	0/1:60:24,36:24:837:36:1287:-98.071,0,-54.0343	1/1:55:0,54:0:0:54:1924:-173.066,-16.2556,0	1/1:30:0,30:0:0:30:1046:-94.4308,-9.0309,0	1/1:21:0,21:0:0:21:740:-66.8881,-6.32163,0	0/1:39:26,13:26:864:13:460:-29.9598,0,-59.4323	0/1:161:77,83:77:2593:83:2967:-218.707,0,-173.925	1/1:125:0,125:0:0:125:4434:-398.986,-37.6288,0	0/1:55:41,14:41:1397:14:504:-29.1357,0,-105.891	1/1:74:1,71:1:35:71:2514:-223.43,-18.8077,0	0/1:65:42,23:42:1450:23:820:-54.5379,0,-102.271	0/1:66:30,36:30:1048:36:1262:-93.9833,0,-67.9963	0/1:164:94,70:94:3224:70:2491:-174.999,0,-232.917	1/1:147:0,146:0:0:146:5189:-466.64,-43.9504,0	1/1:33:0,32:0:0:32:1132:-101.825,-9.63296,0	0/1:267:160,105:160:5531:105:3755:-258.006,0,-400.211	1/1:88:4,81:4:139:81:2862:-246.012,-14.0988,0	1/1:79:2,77:2:71:77:2747:-240.986,-17.3173,0	0/1:7:4,2:4:137:2:72:-4.7457,0,-10.0222	1/1:17:0,17:0:0:17:599:-54.2381,-5.11751,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:15:8,7:8:260:7:248:-18.1487,0,-17.0429	0/1:56:31,25:31:1063:25:896:-63.9122,0,-70.8992	0/1:171:76,93:76:2644:93:3324:-248.14,0,-179.8	0/1:82:47,35:47:1636:35:1252:-88.29,0,-112.719	0/1:52:25,24:25:845:24:851:-61.8838,0,-53.8659	0/1:11:7,4:7:235:4:143:-9.90142,0,-16.4041	0/1:106:51,53:51:1741:53:1883:-138.066,0,-113.72	0/1:43:26,17:26:896:17:612:-42.4691,0,-63.3373	0/1:193:105,87:105:3559:87:3090:-220.178,0,-242.395	0/1:57:29,28:29:1006:28:1004:-73.4819,0,-68.7245	0/1:51:25,26:25:874:26:928:-68.4746,0,-59.9471	1/1:95:0,94:0:0:94:3334:-299.906,-28.2968,0	1/1:60:0,59:0:0:59:2093:-188.244,-17.7608,0	0/1:96:49,47:49:1691:47:1651:-119.978,0,-114.101	1/1:70:0,69:0:0:69:2452:-220.617,-20.7711,0	0/1:105:72,33:72:2493:33:1184:-75.2478,0,-180.964	0/1:113:69,44:69:2406:44:1562:-106.85,0,-176.274	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.82154	0/1:104:58,45:58:1986:45:1608:-113.819,0,-131.237	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	0/1:11:8,3:8:274:3:108:-6.76384,0,-19.3281	0/1:180:90,89:90:3146:89:3180:-232.234,0,-206.688	0/1:48:33,15:33:1137:15:532:-33.7574,0,-83.6948	1/1:12:1,11:1:36:11:396:-32.5021,-0.131665,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:54:0,54:0:0:54:1919:-172.897,-16.2556,0	1/1:73:1,71:1:29:71:2522:-224.272,-19.1013,0	0/0:2:2,0:2:70:0:0:0,-0.60206,-6.3691	1/1:74:0,74:0:0:74:2652:-238.852,-22.2762,0	1/1:84:0,83:0:0:83:2954:-265.737,-24.9855,0	0/1:51:37,13:37:1248:13:459:-26.3076,0,-90.6163	1/1:73:1,72:1:35:72:2561:-227.367,-18.6207,0	0/1:162:100,61:100:3364:61:2184:-147.908,0,-240.585	0/1:88:60,28:60:2058:28:1000:-63.8247,0,-149.608	1/1:48:1,45:1:35:45:1597:-140.726,-10.8821,0	1/1:39:0,39:0:0:39:1400:-126.291,-11.7402,0	0/1:40:20,19:20:680:19:680:-49.5031,0,-47.0406	0/1:6:2,4:2:72:4:144:-11.5074,0,-4.69866	1/1:53:1,52:1:36:52:1856:-164.031,-12.7084,0	0/1:67:34,33:34:1165:33:1163:-84.7895,0,-75.5542	1/1:97:0,94:0:0:94:3341:-300.501,-28.2968,0	1/1:73:0,73:0:0:73:2602:-234.414,-21.9752,0	0/1:86:48,38:48:1610:38:1360:-96.7944,0,-107.68	1/1:59:1,55:1:30:55:1939:-171.807,-14.276,0	1/1:21:0,20:0:0:20:716:-64.408,-6.0206,0	1/1:84:1,82:1:35:82:2922:-259.919,-22.0121,0	0/1:76:36,40:36:1243:40:1408:-104.111,0,-79.2685	0/1:144:85,58:85:2922:58:2065:-142.722,0,-206.75	0/1:45:21,24:21:710:24:860:-64.1731,0,-47.9233	0/1:73:36,35:36:1237:35:1256:-91.709,0,-85.066	0/1:51:31,20:31:1050:20:700:-47.9641,0,-75.8781	0/1:122:67,55:67:2330:55:1959:-139.834,0,-163.9	1/1:24:0,24:0:0:24:849:-76.7245,-7.22472,0	1/1:55:0,55:0:0:55:1972:-177.691,-16.5567,0	1/1:64:0,64:0:0:64:2266:-204.166,-19.2659,0	0/1:44:24,19:24:833:19:680:-48.3227,0,-57.4577	0/1:109:54,55:54:1840:55:1968:-144.555,0,-122.364	0/1:87:60,26:60:2005:26:923:-57.1385,0,-147.072	1/1:113:1,112:1:36:112:3956:-351.702,-30.5928,0	1/1:104:0,102:0:0:102:3613:-325.02,-30.7051,0
chr07	22636750	.	A	G	94496.9	PASS	AB=0.522843;ABP=40.5095;AC=54;AF=0.287234;AN=188;AO=4352;CIGAR=1X;DP=13704;DPB=13704;DPRA=1.27948;EPP=9306.17;EPPR=20271.5;GTI=0;LEN=1;MEANALT=1.02941;MQM=47.8274;MQMR=59.6611;NS=94;NUMALT=1;ODDS=0.910164;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154134;QR=332899;RO=9350;RPL=2321;RPP=44.9728;RPPR=47.9726;RPR=2031;RUN=1;SAF=2338;SAP=55.3891;SAR=2014;SRF=4459;SRP=46.3524;SRR=4891;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:47,26:47:1684:26:920:-56.2721,0,-129.854	0/1:165:78,87:78:2792:87:3094:-219.264,0,-201.816	0/1:176:85,91:85:3029:91:3230:-225.124,0,-219.857	0/1:367:159,208:159:5665:208:7367:-528.458,0,-399.448	0/0:117:116,1:116:4152:1:36:0,-31.8744,-369.757	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.605	0/0:258:254,4:254:9048:4:129:0,-66.0674,-802.602	0/1:194:102,92:102:3609:92:3228:-226.259,0,-266.618	0/0:158:157,1:157:5544:1:36:0,-43.9645,-495.372	0/1:132:75,57:75:2688:57:2023:-137.335,0,-202.407	0/0:106:106,0:106:3771:0:0:0,-31.9092,-339.563	0/0:138:138,0:138:4900:0:0:0,-41.5421,-440.963	0/1:163:71,92:71:2535:92:3272:-228.85,0,-179.263	0/1:99:50,49:50:1762:49:1739:-121.876,0,-129.032	0/1:132:64,68:64:2267:68:2411:-173.273,0,-164.554	0/0:94:94,0:94:3356:0:0:0,-28.2968,-302.221	0/0:102:102,0:102:3644:0:0:0,-30.7051,-328.148	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.352	0/1:62:25,37:25:896:37:1290:-89.4226,0,-62.2612	0/1:293:141,152:141:5032:152:5380:-379.523,0,-364.74	0/0:200:200,0:200:7113:0:0:0,-60.206,-639.957	0/1:94:22,72:22:775:72:2572:-198.743,0,-41.772	0/0:143:142,1:142:5088:1:36:0,-39.8597,-454.842	0/1:148:78,70:78:2783:70:2499:-170.472,0,-206.137	0/1:130:70,60:70:2520:60:2131:-145.557,0,-187.863	0/1:442:238,203:238:8449:203:7137:-499.485,0,-627.229	0/0:345:345,0:345:12296:0:0:0,-103.855,-1105.94	0/0:63:63,0:63:2253:0:0:0,-18.9649,-203.021	0/1:398:181,217:181:6457:217:7722:-556.967,0,-461.391	0/0:190:184,6:184:6600:6:208:0,-39.3284,-575.935	0/0:172:170,2:170:6069:2:72:0,-45.243,-539.643	0/1:13:6,7:6:212:7:252:-18.3785,0,-15.2803	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:18:11,7:11:392:7:243:-14.2384,0,-30.2015	0/1:58:25,33:25:896:33:1170:-78.2517,0,-63.3102	0/1:308:157,151:157:5605:151:5400:-384.066,0,-411.674	0/1:170:74,96:74:2629:96:3394:-243.78,0,-185.671	0/1:103:55,48:55:1968:48:1681:-112.007,0,-146.368	0/1:13:5,8:5:176:8:288:-19.9453,0,-12.2608	0/1:243:139,104:139:4923:104:3678:-243.082,0,-369.822	0/1:71:37,34:37:1320:34:1220:-83.3073,0,-97.7288	0/1:283:141,142:141:5041:142:5008:-340.424,0,-368.208	0/1:138:74,64:74:2603:64:2246:-155.805,0,-192.94	0/1:119:68,51:68:2432:51:1811:-123.367,0,-183.295	0/0:132:131,1:131:4679:1:36:0,-36.1377,-417.52	0/0:126:126,0:126:4463:0:0:0,-37.9298,-401.81	0/1:209:97,112:97:3449:112:3943:-281.366,0,-247.707	0/0:141:141,0:141:5039:0:0:0,-42.4452,-453.621	0/1:221:92,129:92:3289:129:4587:-333.973,0,-229.417	0/1:214:94,120:94:3359:120:4206:-306.549,0,-238.103	0/1:10:4,6:4:140:6:212:-16.2544,0,-9.93428	0/1:197:82,115:82:2901:115:4071:-286.48,0,-201.577	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/1:18:7,11:7:248:11:396:-27.6912,0,-17.2457	0/1:281:145,136:145:5183:136:4855:-326.289,0,-381.935	0/1:80:34,46:34:1212:46:1640:-118.498,0,-85.2977	0/1:26:16,10:16:572:10:360:-24.8105,0,-43.9866	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.392	0/0:141:139,1:139:4958:1:32:0,-39.2647,-443.128	0/1:8:1,7:1:27:7:252:-20.3013,0,-0.291543	0/0:226:226,0:226:7999:0:0:0,-68.0328,-719.629	0/0:246:246,0:246:8680:0:0:0,-74.0534,-781.179	0/1:109:48,61:48:1720:61:2153:-153.54,0,-122.263	0/0:142:141,1:141:5048:1:36:0,-39.3227,-451.021	0/1:297:140,157:140:4968:157:5597:-394.827,0,-357.7	0/1:131:47,84:47:1684:84:2995:-218.757,0,-112.412	0/0:74:73,1:73:2620:1:36:0,-18.9301,-232.647	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.147	0/1:102:41,61:41:1467:61:2160:-160.3,0,-101.62	0/1:25:9,16:9:320:16:560:-42.9738,0,-21.6166	0/0:121:119,2:119:4227:2:72:0,-29.9409,-374.097	0/1:118:53,65:53:1891:65:2304:-161.856,0,-134.928	0/0:231:231,0:231:8198:0:0:0,-69.5379,-737.585	0/0:245:245,0:245:8717:0:0:0,-73.7523,-784.5	0/1:172:82,90:82:2923:90:3194:-221.212,0,-211.51	0/0:169:167,2:167:5956:2:72:0,-44.3719,-529.544	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:218:216,2:216:7664:2:72:0,-59.0509,-683.19	0/1:128:81,47:81:2900:47:1677:-100.663,0,-222.676	0/1:305:144,161:144:5127:161:5671:-402.682,0,-369.675	0/1:119:56,63:56:1993:63:2187:-157.575,0,-143.799	0/1:123:58,65:58:2067:65:2278:-161.018,0,-149.257	0/1:140:59,81:59:2063:81:2857:-210.486,0,-143.777	0/1:243:113,130:113:4029:130:4605:-330.797,0,-289.627	0/0:53:53,0:53:1878:0:0:0,-15.9546,-169.294	0/0:113:113,0:113:3983:0:0:0,-34.0164,-358.606	0/0:115:115,0:115:4084:0:0:0,-34.6184,-367.709	0/1:81:37,44:37:1328:44:1562:-110.181,0,-95.4282	0/1:175:86,89:86:3079:89:3146:-217.896,0,-224.627	0/1:137:43,94:43:1529:94:3351:-250.091,0,-96.66	0/0:242:241,1:241:8569:1:36:0,-69.4257,-766.663	0/0:180:180,0:180:6427:0:0:0,-54.1854,-578.466
chr07	22737395	.	TCTA	CCTA,CGTA	84606.9	PASS	AB=0.461299,0.534253;ABP=32.2556,25.9189;AC=137,51;AF=0.728723,0.271277;AN=188;AO=2806,1206;CIGAR=1X3M,2X2M;DP=4023;DPB=4023.25;DPRA=0,1.13016;EPP=6096.16,2621.81;EPPR=0;GTI=0;LEN=1,2;MEANALT=1.68085,2.14545;MQM=59.8945,59.5713;MQMR=0;NS=94;NUMALT=2;ODDS=0.534138;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=99888,42635;QR=0;RO=0;RPL=0,0;RPP=6096.16,2621.81;RPPR=0;RPR=2806,1206;RUN=1,1;SAF=2806,1206;SAP=6096.16,2621.81;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:22:0,11,11:0:0:11,11:384,392:-63.5329,-32.3021,-28.9908,-31.5833,0,-28.272	1/2:49:0,28,21:0:0:28,21:996,743:-142.014,-60.8425,-52.4137,-81.526,0,-75.2044	1/2:90:0,38,50:0:0:38,50:1360,1762:-254.394,-143.487,-132.048,-110.94,0,-95.8882	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:5:0,5,0:0:0:5,0:172,0:-15.818,-1.50515,0,-15.818,-1.50515,-15.818	1/1:37:0,37,0:0:0:37,0:1312,0:-118.382,-11.1381,0,-118.382,-11.1381,-118.382	1/2:41:0,20,21:0:0:20,21:712,743:-118.885,-60.8538,-54.8332,-58.3861,0,-52.0644	1/1:54:0,54,0:0:0:54,0:1924,0:-173.437,-16.2556,0,-173.437,-16.2556,-173.437	1/2:37:0,22,15:0:0:22,15:788,536:-108.32,-44.0556,-37.433,-64.6221,0,-60.1067	1/1:43:0,43,0:0:0:43,0:1536,0:-138.519,-12.9443,0,-138.519,-12.9443,-138.519	1/1:69:0,69,0:0:0:69,0:2468,0:-222.371,-20.7711,0,-222.371,-20.7711,-222.371	1/2:77:0,36,41:0:0:36,41:1272,1455:-222.449,-118.857,-108.02,-103.946,0,-91.6036	1/2:38:0,20,18:0:0:20,18:712,646:-110.941,-53.0421,-47.0215,-58.2559,0,-52.8374	1/2:51:0,20,31:0:0:20,31:708,1090:-146.747,-89.0754,-83.0548,-58.025,0,-48.6931	1/1:38:0,38,0:0:0:38,0:1332,0:-120.18,-11.4391,0,-120.18,-11.4391,-120.18	1/1:30:0,30,0:0:0:30,0:1063,0:-95.9726,-9.0309,0,-95.9726,-9.0309,-95.9726	1/1:34:0,33,1:0:0:33,1:1176,36:-105.788,-9.93399,0,-102.851,-6.63675,-102.549	1/2:23:0,8,15:0:0:8,15:288,525:-66.5479,-43.045,-40.6368,-23.8592,0,-19.3437	1/2:83:0,39,44:0:0:39,44:1380,1563:-240.114,-127.71,-115.969,-112.759,0,-99.5133	1/1:86:0,86,0:0:0:86,0:3068,0:-276.35,-25.8886,0,-276.35,-25.8886,-276.35	1/2:8:0,3,5:0:0:3,5:108,178:-23.6739,-14.8601,-13.957,-9.17208,0,-7.66693	1/1:22:0,22,0:0:0:22,0:784,0:-70.8839,-6.62266,0,-70.8839,-6.62266,-70.8839	1/2:13:0,10,3:0:0:10,3:360,108:-38.5463,-9.17208,-6.16178,-29.734,0,-28.8309	1/2:9:0,3,6:0:0:3,6:104,216:-26.4331,-17.9843,-17.0812,-8.79971,0,-6.99353	1/2:82:0,35,47:0:0:35,47:1244,1667:-237.538,-136.164,-125.628,-101.729,0,-87.5802	1/1:70:0,70,0:0:0:70,0:2504,0:-225.608,-21.0721,0,-225.608,-21.0721,-225.608	1/1:29:0,29,0:0:0:29,0:1020,0:-92.1122,-8.72987,0,-92.1122,-8.72987,-92.1122	1/2:95:0,47,48:0:0:47,48:1684,1688:-274.992,-137.649,-123.5,-137.699,0,-123.249	1/1:71:0,69,2:0:0:69,2:2468,72:-222.013,-20.7711,0,-216.138,-14.5364,-215.536	1/1:39:0,39,0:0:0:39,0:1384,0:-124.859,-11.7402,0,-124.859,-11.7402,-124.859	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:8:0,5,3:0:0:5,3:180,104:-23.4953,-8.79993,-7.29478,-15.0469,0,-14.1438	1/2:4:0,3,1:0:0:3,1:108,25:-11.0935,-2.19883,-1.29574,-9.17208,0,-8.87105	1/2:114:0,46,67:0:0:46,67:1636,2378:-326.937,-193.61,-179.763,-133.341,0,-113.172	1/2:29:0,17,12:0:0:17,12:608,432:-85.1845,-35.6088,-30.4913,-49.9345,0,-46.3222	1/2:48:0,25,23:0:0:25,23:887,817:-139.195,-66.9271,-59.4013,-72.6224,0,-65.6987	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:65:0,32,33:0:0:32,33:1148,1156:-188.022,-94.3799,-84.747,-93.9969,0,-84.0629	1/2:16:0,7,9:0:0:7,9:240,324:-46.2738,-26.7966,-24.6894,-19.8275,0,-17.1182	1/2:29:0,16,12:0:0:16,12:572,406:-79.5423,-32.893,-28.0766,-46.6373,0,-43.0249	1/2:35:0,14,21:0:0:14,21:496,754:-101.909,-61.5054,-57.291,-40.4004,0,-34.0788	1/2:38:0,17,21:0:0:17,21:612,730:-109.477,-59.5347,-54.4172,-50.2959,0,-43.9743	1/1:25:0,25,0:0:0:25,0:880,0:-79.4615,-7.52575,0,-79.4615,-7.52575,-79.4615	1/1:28:0,28,0:0:0:28,0:984,0:-88.8734,-8.42884,0,-88.8734,-8.42884,-88.8734	1/2:74:0,34,40:0:0:34,40:1220,1391:-212.948,-113.43,-103.195,-99.8718,0,-87.8306	1/1:45:0,45,0:0:0:45,0:1596,0:-143.93,-13.5464,0,-143.93,-13.5464,-143.93	1/2:55:0,21,34:0:0:21,34:756,1214:-161.013,-99.3258,-93.0041,-62.0456,0,-51.8106	1/2:49:0,32,17:0:0:32,17:1140,606:-142.674,-49.7541,-40.1212,-93.2762,0,-88.1587	1/2:7:0,2,5:0:0:2,5:72,165:-19.5467,-13.6632,-13.0612,-6.23466,0,-4.72951	1/2:34:0,16,15:0:0:16,15:564,538:-89.7524,-43.8333,-39.0168,-45.9208,0,-41.4053	1/1:20:0,20,0:0:0:20,0:708,0:-64.0456,-6.0206,0,-64.0456,-6.0206,-64.0456	1/2:10:0,7,3:0:0:7,3:248,108:-29.3709,-9.17208,-7.06487,-20.557,0,-19.6539	1/2:79:0,40,38:0:0:40,38:1424,1326:-223.853,-107.845,-95.8037,-116.02,0,-104.581	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:11:0,11,0: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chr07	22737405	.	C	T	19987.2	PASS	AB=0.524041;ABP=14.3907;AC=51;AF=0.271277;AN=188;AO=1193;CIGAR=1X;DP=4089;DPB=4089;DPRA=1.1099;EPP=2593.58;EPPR=6287.25;GTI=0;LEN=1;MEANALT=1.01818;MQM=59.575;MQMR=59.9036;NS=94;NUMALT=1;ODDS=1.43126;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42573;QR=103556;RO=2894;RPL=0;RPP=2593.58;RPPR=6287.25;RPR=1193;RUN=1;SAF=1193;SAP=2593.58;SAR=0;SRF=2894;SRP=6287.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:23:12,11:12:428:11:384:-27.9603,0,-31.9351	0/1:51:30,21:30:1076:21:755:-52.8928,0,-81.8003	0/1:92:42,50:42:1504:50:1784:-133.148,0,-107.955	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:41:20,21:20:720:21:756:-56.0073,0,-52.7865	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:36:22,14:22:792:14:496:-34.1372,0,-60.7686	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.186	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.494	0/1:77:35,42:35:1256:42:1485:-110.693,0,-90.166	0/1:37:20,17:20:716:17:612:-44.2646,0,-53.4995	0/1:55:24,31:24:864:31:1108:-83.4743,0,-61.5259	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.982	0/0:36:35,1:35:1260:1:36:0,-7.2388,-110.107	0/1:23:8,15:8:288:15:536:-41.6319,0,-19.3437	0/1:84:38,46:38:1360:46:1640:-122.596,0,-97.4141	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/1:10:5,5:5:172:5:180:-13.5384,0,-12.8077	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:78:35,43:35:1240:43:1536:-115.047,0,-88.4241	0/0:74:73,0:73:2605:0:0:0,-21.9752,-234.445	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:96:48,48:48:1728:48:1720:-126.081,0,-126.906	0/0:72:70,2:70:2500:2:72:0,-14.8374,-218.416	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:5,3:5:176:3:104:-7.29457,0,-13.7768	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:117:50,67:50:1792:67:2389:-179.908,0,-126.342	0/1:29:17,12:17:608:12:428:-30.1289,0,-46.3222	0/1:48:25,23:25:891:23:820:-59.6731,0,-66.0593	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:67:34,33:34:1220:33:1176:-85.9332,0,-89.9378	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:33:20,12:20:716:12:432:-29.2652,0,-54.813	0/1:38:16,22:16:576:22:788:-59.8057,0,-40.7358	0/1:38:20,18:20:716:18:644:-46.6871,0,-53.3286	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.4821	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/1:73:34,39:34:1220:39:1392:-103.591,0,-88.1316	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:55:22,33:22:788:33:1180:-89.9489,0,-54.6881	0/1:49:31,18:31:1116:18:648:-43.9014,0,-86.0012	0/1:7:2,5:2:72:5:180:-14.4386,0,-4.72951	0/1:35:20,15:20:712:15:540:-38.3474,0,-53.8706	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:78:40,38:40:1432:38:1364:-99.5591,0,-105.674	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9098	0/0:47:46,1:46:1643:1:36:0,-10.5501,-144.56	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.343	0/0:73:72,1:72:2584:1:36:0,-18.3769,-228.077	0/1:41:23,18:23:820:18:648:-46.3097,0,-61.7757	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:54:24,30:24:856:30:1065:-79.8902,0,-61.1055	0/1:61:13,48:13:468:48:1697:-134.642,0,-24.0791	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.751	0/1:30:15,15:15:531:15:527:-38.7293,0,-39.091	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:78:34,44:34:1212:44:1564:-117.57,0,-85.8969	0/0:75:75,0:75:2676:0:0:0,-22.5772,-240.529	0/0:118:118,0:118:4221:0:0:0,-35.5215,-380.069	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.845	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.933	0/1:63:29,34:29:1044:34:1201:-89.4288,0,-75.3099	0/1:83:52,31:52:1872:31:1112:-75.3577,0,-143.774	0/1:42:18,24:18:648:24:856:-64.7117,0,-46.0086	0/1:60:26,34:26:936:34:1220:-92.0283,0,-66.4977	0/1:38:22,16:22:792:16:576:-40.7234,0,-60.1665	0/1:83:27,56:27:964:56:1993:-154.568,0,-62.0913	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.61	0/1:30:11,19:11:396:19:665:-51.1312,0,-26.9518	0/1:92:44,48:44:1576:48:1720:-127.38,0,-114.437	0/1:61:26,35:26:936:35:1248:-94.2559,0,-66.1966	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.886	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.616
chr07	22745883	.	A	G	41145.6	PASS	AB=0.495114;ABP=3.77421;AC=55;AF=0.292553;AN=188;AO=1842;CIGAR=1X;DP=6407;DPB=6407;DPRA=1.1428;EPP=114.842;EPPR=209.77;GTI=1;LEN=1;MEANALT=1.05357;MQM=59.9935;MQMR=59.9906;NS=94;NUMALT=1;ODDS=1.31911;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65213;QR=163237;RO=4561;RPL=10;RPP=3916.48;RPPR=9300;RPR=1832;RUN=1;SAF=1085;SAP=129.837;SAR=757;SRF=2681;SRP=308.474;SRR=1880;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:7,4:7:252:4:135:-9.17118,0,-19.7176	0/1:67:30,37:30:1076:37:1279:-95.2354,0,-76.9389	0/1:59:34,25:34:1211:25:874:-61.2144,0,-91.5347	0/1:53:31,22:31:1112:22:779:-54.4775,0,-84.4368	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.646	0/1:58:37,21:37:1328:21:733:-48.8294,0,-102.362	0/0:81:81,0:81:2878:0:0:0,-24.3834,-259.257	0/1:44:18,26:18:648:26:923:-70.1414,0,-45.4066	0/0:138:138,0:138:4960:0:0:0,-41.5421,-446.546	0/0:162:162,0:162:5808:0:0:0,-48.7669,-522.832	0/1:128:70,58:70:2508:58:2059:-147.048,0,-187.44	0/1:115:52,63:52:1863:63:2213:-164.815,0,-133.33	0/1:131:66,65:66:2364:65:2324:-169.985,0,-173.583	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.35	0/0:140:140,0:140:4980:0:0:0,-42.1442,-448.349	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:76:46,30:46:1652:30:1072:-73.9142,0,-126.09	0/1:46:31,15:31:1108:15:510:-32.3722,0,-86.1836	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/1:24:7,16:7:252:16:572:-44.5301,0,-15.7454	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/1:53:34,19:34:1212:19:680:-45.5746,0,-93.4317	0/1:37:21,16:21:744:16:568:-40.3138,0,-56.1462	0/1:78:35,43:35:1260:43:1532:-114.689,0,-90.2251	0/0:110:110,0:110:3885:0:0:0,-33.1133,-349.845	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:71:43,28:43:1535:28:995:-68.4909,0,-117.069	0/0:41:39,2:39:1400:2:72:0,-5.50551,-119.462	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:297:159,138:159:5698:138:4876:-349.59,0,-423.53	0/1:25:20,5:20:716:5:180:-9.02631,0,-57.242	0/1:127:59,67:59:2120:67:2373:-175.539,0,-152.779	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:55:27,28:27:968:28:989:-72.7654,0,-70.8807	0/1:63:35,28:35:1256:28:996:-70.99,0,-94.3804	0/1:51:29,22:29:1044:22:745:-52.008,0,-78.9223	0/1:120:65,55:65:2323:55:1962:-140.731,0,-173.206	0/1:113:65,48:65:2318:48:1666:-116.205,0,-174.84	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:39:26,13:26:932:13:453:-29.3595,0,-72.4587	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:54:20,34:20:711:34:1211:-93.0399,0,-48.06	0/1:63:34,29:34:1220:29:1032:-74.2286,0,-91.1419	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:43:23,20:23:828:20:708:-51.1013,0,-61.8998	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:46:27,19:27:953:19:672:-46.9595,0,-72.2359	0/1:19:9,10:9:324:10:351:-26.2071,0,-23.7863	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:191:190,1:190:6805:1:36:0,-53.8985,-608.921	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:25:24,1:24:864:1:36:0,-3.92747,-74.4843	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/1:43:23,20:23:805:20:720:-52.1845,0,-59.8232	0/1:61:12,49:12:432:49:1751:-139.511,0,-20.8584	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.286	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:163:85,78:85:3056:78:2800:-203.172,0,-226.2	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/1:53:23,30:23:805:30:1034:-77.4101,0,-56.8129	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/1:37:16,21:16:576:21:715:-53.5257,0,-41.0369	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:67:65,2:65:2336:2:72:0,-13.3323,-203.663	0/1:28:12,16:12:432:16:568:-43.023,0,-30.7924	0/1:82:37,45:37:1324:45:1575:-117.353,0,-94.7776	0/1:117:53,64:53:1904:64:2300:-172.04,0,-136.417	0/1:122:53,67:53:1899:67:2395:-179.469,0,-134.848	0/1:121:60,61:60:2152:61:2168:-158.962,0,-157.523	0/1:236:113,123:113:4068:123:4352:-320.815,0,-295.261	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/1:96:43,53:43:1548:53:1866:-139.319,0,-110.714	0/1:192:96,96:96:3436:96:3439:-251.925,0,-251.611	0/1:108:37,71:37:1319:71:2492:-192.019,0,-86.4999	0/0:94:94,0:94:3358:0:0:0,-28.2968,-302.436	0/0:181:181,0:181:6492:0:0:0,-54.4864,-584.363
chr07	22745929	.	G	T	115114	PASS	AB=0.496507;ABP=3.3895;AC=133;AF=0.707447;AN=188;AO=4383;CIGAR=1X;DP=6205;DPB=6205;DPRA=17.0137;EPP=130.36;EPPR=78.2192;GTI=1;LEN=1;MEANALT=1.03297;MQM=59.9859;MQMR=59.9945;NS=94;NUMALT=1;ODDS=0.514835;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155773;QR=64812;RO=1819;RPL=4383;RPP=9520.57;RPPR=3952.92;RPR=0;RUN=1;SAF=2445;SAP=130.36;SAR=1938;SRF=1035;SRP=78.2192;SRR=784;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:61:35,26:35:1236:26:928:-65.4754,0,-93.1814	0/1:58:25,33:25:892:33:1179:-88.9575,0,-63.1399	0/1:51:20,31:20:711:31:1103:-84.2273,0,-48.9631	1/1:27:0,27:0:0:27:963:-86.9859,-8.12781,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:54:0,54:0:0:54:1931:-174.066,-16.2556,0	0/1:57:22,35:22:792:35:1207:-91.7706,0,-54.4461	1/1:83:0,83:0:0:83:2894:-260.695,-24.9855,0	0/1:43:25,18:25:900:18:631:-44.1714,0,-68.3767	1/1:132:0,132:0:0:132:4664:-419.923,-39.736,0	1/1:160:0,160:0:0:160:5656:-509.161,-48.1648,0	0/1:123:56,67:56:2000:67:2400:-179.23,0,-143.247	0/1:115:63,52:63:2240:52:1836:-130.899,0,-167.246	0/1:132:67,65:67:2388:65:2328:-170.044,0,-175.442	1/1:87:0,87:0:0:87:3066:-276.166,-26.1896,0	1/1:134:0,134:0:0:134:4774:-429.818,-40.338,0	1/1:88:0,88:0:0:88:3139:-282.736,-26.4906,0	0/1:76:30,46:30:1059:46:1632:-124.291,0,-72.7421	0/1:47:15,32:15:531:32:1152:-89.8417,0,-33.9735	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	0/1:24:18,6:18:640:6:216:-12.5658,0,-50.7046	1/1:40:0,40:0:0:40:1401:-126.385,-12.0412,0	0/1:49:19,30:19:680:30:1076:-82.4024,0,-46.7787	0/1:35:14,21:14:485:21:752:-57.4702,0,-33.4409	0/1:79:42,37:42:1481:37:1309:-94.3273,0,-109.798	1/1:105:0,105:0:0:105:3752:-337.881,-31.6082,0	1/1:60:0,60:0:0:60:2133:-192.237,-18.0618,0	0/1:70:29,41:29:1005:41:1468:-111.344,0,-69.6864	1/1:38:2,36:2:72:36:1292:-109.747,-4.60242,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:281:134,146:134:4772:146:5139:-378.004,0,-344.989	0/1:24:5,19:5:172:19:672:-53.5821,0,-8.59325	0/1:124:69,55:69:2451:55:1972:-140.427,0,-183.517	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:53:28,25:28:1004:25:896:-65.0058,0,-74.7213	0/1:63:28,35:28:1004:35:1232:-92.2178,0,-71.711	0/1:47:21,26:21:748:26:932:-69.86,0,-53.4969	0/1:118:53,65:53:1896:65:2319:-173.448,0,-135.397	0/1:107:45,62:45:1612:62:2200:-166.031,0,-113.16	1/1:36:0,36:0:0:36:1273:-114.871,-10.8371,0	1/1:67:0,67:0:0:67:2352:-211.938,-20.169,0	0/1:38:13,25:13:460:25:865:-66.7235,0,-30.2962	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	0/1:54:34,20:34:1212:20:701:-47.1561,0,-93.1307	0/1:62:28,34:28:995:34:1224:-91.8032,0,-71.2002	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:42:20,22:20:716:22:792:-58.9624,0,-52.1245	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:43:18,25:18:644:25:887:-67.2038,0,-45.3463	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:69:0,69:0:0:69:2447:-220.485,-20.7711,0	1/1:185:2,183:2:72:183:6513:-579.42,-48.8538,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:24:1,23:1:36:23:824:-70.885,-3.62645,0	1/1:100:0,100:0:0:100:3567:-321.238,-30.103,0	0/1:25:12,13:12:432:13:464:-34.5718,0,-31.6954	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:42:20,22:20:712:22:779:-57.7888,0,-51.7634	0/1:60:48,12:48:1724:12:424:-20.4346,0,-137.384	1/1:86:0,86:0:0:86:3045:-274.279,-25.8886,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/1:157:78,79:78:2769:79:2796:-204.618,0,-202.189	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:37:0,37:0:0:37:1295:-116.848,-11.1381,0	0/1:54:33,21:33:1163:21:739:-50.5768,0,-88.7205	1/1:61:0,61:0:0:61:2160:-194.665,-18.3628,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:36:20,16:20:707:16:572:-40.9763,0,-53.1175	1/1:75:0,74:0:0:74:2643:-237.756,-22.2762,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:63:1,61:1:36:61:2165:-191.517,-15.4254,0	0/1:26:14,12:14:485:12:428:-31.032,0,-36.1502	0/1:82:46,36:46:1632:36:1288:-91.5391,0,-122.484	0/1:113:63,50:63:2255:50:1784:-126.826,0,-169.196	0/1:118:68,50:68:2444:50:1787:-125.59,0,-184.693	0/1:114:59,55:59:2100:55:1952:-141.638,0,-154.952	0/1:227:119,108:119:4251:108:3833:-276.833,0,-314.435	1/1:41:0,41:0:0:41:1444:-130.253,-12.3422,0	1/1:99:0,99:0:0:99:3534:-318.269,-29.802,0	1/1:95:0,95:0:0:95:3408:-306.934,-28.5979,0	0/1:94:52,42:52:1856:42:1487:-105.827,0,-139.023	0/1:187:95,92:95:3416:92:3263:-237.592,0,-251.36	0/1:110:73,37:73:2600:37:1328:-86.7089,0,-201.136	1/1:58:0,58:0:0:58:2058:-185.488,-17.4597,0	1/1:178:0,178:0:0:178:6367:-573.12,-53.5833,0
chr07	22805734	.	A	C	118906	PASS	AB=0.461807;ABP=206.034;AC=54;AF=0.287234;AN=188;AO=7414;CIGAR=1X;DP=24034;DPB=24034;DPRA=3.87546;EPP=16102.3;EPPR=36053.8;GTI=1;LEN=1;MEANALT=1.19672;MQM=59.9861;MQMR=59.9919;NS=94;NUMALT=1;ODDS=3.63877;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261335;QR=590661;RO=16606;RPL=7414;RPP=16102.3;RPPR=36053.8;RPR=0;RUN=1;SAF=7414;SAP=16102.3;SAR=0;SRF=16606;SRP=36062.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:25,15:25:892:15:536:-36.5336,0,-68.5585	0/1:116:68,48:68:2414:48:1707:-118.996,0,-182.596	0/1:111:73,38:73:2587:38:1340:-87.4838,0,-199.665	0/1:157:90,67:90:3205:67:2392:-168.276,0,-241.411	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:137:78,59:78:2771:59:2108:-148.748,0,-208.391	0/0:102:102,0:102:3628:0:0:0,-30.7051,-326.725	0/1:79:48,31:48:1720:31:1088:-74.446,0,-131.304	0/0:279:279,0:279:9914:0:0:0,-83.9874,-892.205	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/1:26:15,11:15:531:11:392:-27.7933,0,-40.2951	0/1:47:24,23:24:852:23:808:-58.8917,0,-62.852	0/1:24:8,16:8:284:16:559:-43.4129,0,-18.6786	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:119:62,57:62:2199:57:2011:-145.439,0,-162.353	0/1:118:61,56:61:2175:56:1994:-144.152,0,-160.349	0/0:123:123,0:123:4383:0:0:0,-37.0267,-394.642	0/1:111:50,61:50:1757:61:2192:-164.131,0,-124.997	0/0:102:102,0:102:3634:0:0:0,-30.7051,-327.265	0/1:96:49,47:49:1747:47:1665:-121.237,0,-128.615	0/1:56:26,30:26:923:30:1067:-79.4835,0,-66.5291	0/1:251:130,121:130:4652:121:4231:-305.412,0,-343.284	0/0:171:171,0:171:6097:0:0:0,-51.4761,-548.833	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/1:195:122,73:122:4370:73:2551:-171.137,0,-334.771	0/0:151:145,6:145:5142:6:212:0,-26.0307,-443.496	0/0:114:114,0:114:4031:0:0:0,-34.3174,-362.98	0/1:1071:574,497:574:20469:497:17537:-1255.57,0,-1519.31	0/0:1134:1132,1:1132:40272:1:36:0,-337.829,-3618.95	0/0:970:968,2:968:34381:2:72:0,-285.162,-3086.39	0/1:2662:1434,1225:1434:51025:1225:43252:-3090.52,0,-3789.75	0/1:1366:668,697:668:23753:697:24588:-1801.05,0,-1725.92	0/1:94:52,42:52:1856:42:1492:-106.278,0,-139.023	0/1:207:108,99:108:3860:99:3504:-253.259,0,-285.283	0/1:213:110,102:110:3919:102:3584:-258.59,0,-288.726	0/1:832:444,387:444:15801:387:13725:-984.52,0,-1171.27	0/1:132:76,56:76:2711:56:1992:-139.818,0,-204.498	0/1:135:67,68:67:2365:68:2373:-173.189,0,-172.468	0/1:116:69,47:69:2447:47:1666:-115.307,0,-185.566	0/1:21:12,9:12:415:9:320:-22.8207,0,-31.3587	0/1:21:12,9:12:428:9:316:-22.4572,0,-32.5372	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.788	0/0:99:99,0:99:3532:0:0:0,-29.802,-318.09	0/1:148:81,67:81:2871:67:2341:-166.393,0,-214.076	0/0:121:121,0:121:4281:0:0:0,-36.4246,-385.468	0/1:115:72,43:72:2561:43:1519:-102.384,0,-196.121	0/1:167:84,83:84:3000:83:2947:-215.193,0,-219.96	0/1:1099:634,465:634:22528:465:16317:-1137.39,0,-1695.75	0/1:126:71,55:71:2517:55:1916:-134.784,0,-188.851	0/0:95:95,0:95:3372:0:0:0,-28.5978,-303.696	0/1:898:518,379:518:18452:379:13390:-934.515,0,-1389.89	0/1:76:44,32:44:1559:32:1140:-80.0309,0,-117.723	0/1:143:77,66:77:2720:66:2342:-167.992,0,-201.996	0/1:808:458,350:458:16204:350:12306:-864.155,0,-1214.82	0/0:1231:1228,2:1228:43769:2:72:0,-363.79,-3930.91	0/0:96:96,0:96:3435:0:0:0,-28.8989,-309.363	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/1:709:352,356:352:12550:356:12551:-915.945,0,-915.845	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:192:192,0:192:6805:0:0:0,-57.7978,-612.524	0/1:47:26,21:26:932:21:752:-53.8578,0,-70.0505	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.064	0/1:174:115,59:115:4069:59:2084:-135.449,0,-314.018	0/1:127:50,77:50:1796:77:2670:-202.313,0,-123.692	0/0:180:179,1:179:6411:1:27:0,-51.4856,-574.377	0/0:137:136,0:136:4838:0:0:0,-40.9401,-435.217	0/1:69:30,39:30:1043:39:1387:-104.357,0,-73.405	0/1:925:516,409:516:18345:409:14365:-1013.68,0,-1372.2	0/0:156:156,0:156:5523:0:0:0,-46.9607,-497.197	0/1:40:24,16:24:848:16:563:-38.958,0,-64.5985	0/0:196:195,1:195:6947:1:27:0,-56.3021,-622.598	0/0:144:144,0:144:5133:0:0:0,-43.3483,-462.113	0/1:140:79,61:79:2791:61:2144:-151.082,0,-209.285	0/0:70:70,0:70:2484:0:0:0,-21.0721,-223.771	0/0:1204:1202,1:1202:42738:1:36:0,-358.901,-3841.41	0/0:93:93,0:93:3288:0:0:0,-27.9958,-296.14	0/1:88:45,43:45:1603:43:1502:-108.981,0,-118.069	0/1:245:137,108:137:4904:108:3850:-272.944,0,-367.759	0/1:46:22,24:22:775:24:835:-61.6192,0,-56.2238	0/1:32:18,14:18:635:14:471:-33.0766,0,-47.844	0/1:26:11,15:11:388:15:536:-40.748,0,-27.4306	0/1:64:32,32:32:1116:32:1120:-81.8404,0,-81.4787	0/0:37:37,0:37:1290:0:0:0,-11.1381,-116.399	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/1:583:295,288:295:10481:288:10081:-731.743,0,-767.714	0/1:537:255,281:255:9042:281:9820:-722.049,0,-652.052	0/1:39:13,26:13:464:26:914:-70.8345,0,-30.3573	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218
chr07	22838521	.	G	T	72434.8	PASS	AB=0.489629;ABP=5.98294;AC=133;AF=0.722826;AN=184;AO=3577;CIGAR=1X;DP=5206;DPB=5206;DPRA=0;EPP=7770.37;EPPR=3533.82;GTI=1;LEN=1;MEANALT=1.03261;MQM=59.6399;MQMR=59.805;NS=92;NUMALT=1;ODDS=1.00357;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127812;QR=57949;RO=1626;RPL=0;RPP=7770.37;RPPR=3533.82;RPR=3577;RUN=1;SAF=3577;SAP=7770.37;SAR=0;SRF=1626;SRP=3533.82;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:43,26:43:1544:26:921:-62.4057,0,-118.482	0/1:44:18,26:18:648:26:932:-70.9535,0,-45.4066	0/1:117:51,66:51:1821:66:2357:-177.135,0,-128.938	0/1:118:68,50:68:2406:50:1766:-123.692,0,-181.269	1/1:25:0,25:0:0:25:900:-81.3202,-7.52575,0	1/1:31:0,31:0:0:31:1092:-98.5767,-9.33193,0	1/1:85:0,85:0:0:85:3060:-275.578,-25.5876,0	0/1:71:31,40:31:1116:40:1421:-106.488,0,-79.3786	1/1:69:0,69:0:0:69:2476:-223.052,-20.7711,0	0/1:61:23,38:23:828:38:1368:-105.057,0,-56.4251	1/1:10:0,10:0:0:10:360:-32.7439,-3.0103,0	1/1:33:0,33:0:0:33:1188:-106.734,-9.93399,0	0/1:53:24,29:24:864:29:1040:-77.5538,0,-62.1209	0/1:24:13,11:13:464:11:396:-28.758,0,-34.8728	0/1:28:12,16:12:432:16:576:-43.7176,0,-30.6337	1/1:27:0,27:0:0:27:972:-87.7691,-8.12781,0	1/1:11:0,11:0:0:11:381:-33.9285,-3.31133,0	1/1:9:0,9:0:0:9:324:-29.5043,-2.70927,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:59:26,33:26:928:33:1188:-89.3683,0,-65.7592	1/1:73:0,73:0:0:73:2601:-234.252,-21.9752,0	0/1:93:66,27:66:2349:27:953:-58.0353,0,-183.672	1/1:89:0,89:0:0:89:3185:-286.845,-26.7917,0	0/1:42:16,26:16:572:26:936:-71.9162,0,-39.1702	0/1:113:55,58:55:1965:58:2065:-152.101,0,-143.089	0/1:150:57,93:57:1988:93:3336:-255.104,0,-134.03	1/1:135:0,135:0:0:135:4792:-431.432,-40.6391,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:137:67,70:67:2370:70:2516:-185.449,0,-172.306	1/1:67:1,66:1:36:66:2364:-209.133,-16.5707,0	1/1:67:2,65:2:72:65:2302:-200.579,-13.3323,0	0/1:10:8,2:8:273:2:72:-3.82642,0,-21.8899	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:79:43,36:43:1529:36:1296:-93.1622,0,-114.12	0/1:129:70,59:70:2497:59:2105:-150.884,0,-186.019	0/1:16:10,5:10:360:5:180:-11.6768,0,-27.869	.:.:.:.:.:.:.:.	0/1:61:30,31:30:1076:31:1101:-80.9787,0,-78.5623	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:188:115,73:115:4072:73:2619:-179.354,0,-310.053	0/1:12:5,7:5:180:7:252:-19.4162,0,-12.9397	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.256	1/1:112:0,112:0:0:112:3966:-356.223,-33.7154,0	1/1:87:0,87:0:0:87:3094:-278.624,-26.1896,0	0/1:110:43,67:43:1532:67:2389:-182.067,0,-105.06	1/1:75:0,75:0:0:75:2679:-241.328,-22.5773,0	0/1:57:28,29:28:1004:29:1040:-76.7547,0,-73.5172	0/1:127:66,61:66:2361:61:2177:-157.964,0,-174.516	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:131:52,79:52:1868:79:2836:-215.884,0,-128.964	1/1:30:0,30:0:0:30:1042:-93.712,-9.0309,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:101:57,44:57:2003:44:1565:-110.148,0,-150.134	0/1:46:24,22:24:860:22:792:-57.7579,0,-63.8745	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:55:0,55:0:0:55:1965:-177.123,-16.5567,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:62:0,62:0:0:62:2228:-199.817,-18.6639,0	1/1:104:0,103:0:0:103:3696:-332.197,-31.0061,0	0/1:55:26,29:26:936:29:1029:-76.346,0,-68.0028	1/1:42:0,42:0:0:42:1463:-131.93,-12.6433,0	0/1:79:25,53:25:892:53:1908:-148.272,0,-56.9037	0/1:91:71,20:71:2533:20:701:-36.018,0,-200.82	1/1:10:0,10:0:0:10:356:-32.3808,-3.0103,0	1/1:55:0,55:0:0:55:1961:-176.726,-16.5567,0	0/1:47:21,26:21:756:26:921:-69.0506,0,-54.205	0/1:17:11,6:11:396:6:212:-14.3073,0,-30.8652	1/1:161:0,161:0:0:161:5735:-515.497,-48.4658,0	0/1:60:18,42:18:648:42:1512:-118.277,0,-40.545	1/1:96:0,96:0:0:96:3442:-309.964,-28.8989,0	1/1:78:0,78:0:0:78:2796:-251.433,-23.4803,0	0/1:88:59,29:59:2109:29:1032:-66.7013,0,-163.587	1/1:63:1,62:1:36:62:2228:-197.186,-15.3666,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:59:0,59:0:0:59:2120:-191.028,-17.7608,0	0/1:75:41,34:41:1457:34:1209:-86.517,0,-108.689	0/1:161:86,75:86:3035:75:2692:-194.058,0,-224.754	0/1:45:27,18:27:957:18:648:-45.1051,0,-72.8969	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:37:19,18:19:684:18:644:-47.1525,0,-50.7522	1/1:14:0,14:0:0:14:489:-44.3389,-4.21442,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:16:9,7:9:324:7:252:-18.2121,0,-24.6894	0/1:32:15,17:15:540:17:612:-45.7805,0,-38.9843	0/1:27:17,10:17:612:10:360:-24.6165,0,-47.2856	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0
chr07	22861715	.	AGCG	AGCA,GGCA	129307	PASS	AB=0.473486,0.519785;ABP=25.6947,15.6411;AC=132,54;AF=0.709677,0.290323;AN=186;AO=4229,1942;CIGAR=3M1X,1X2M1X;DP=6208;DPB=6209;DPRA=13.4848,1.19916;EPP=9177.48,4220.01;EPPR=13.8677;GTI=1;LEN=1,4;MEANALT=1.94565,2.35593;MQM=59.9998,59.9789;MQMR=60;NS=93;NUMALT=2;ODDS=1.12405;PAIRED=0,0;PAIREDR=0;PAO=0,4;PQA=0,68;PQR=0;PRO=0;QA=150925,67980;QR=174;RO=5;RPL=4228,1942;RPP=9177.48,4220.01;RPPR=13.8677;RPR=1,0;RUN=1,1;SAF=0,0;SAP=9186.17,4220.01;SAR=4229,1942;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,18,26:0:0:18,26:644,913:-127.176,-74.6589,-69.2404,-52.8721,0,-45.0453	1/2:65:0,33,32:0:0:33,32:1171,1121:-186.973,-91.5625,-81.6286,-95.7627,0,-86.1297	1/2:157:0,69,88:0:0:69,88:2468,3107:-454.616,-253.368,-232.597,-201.603,0,-175.112	1/2:118:0,60,58:0:0:60,58:2133,2011:-337.626,-163.802,-145.741,-174.175,0,-156.715	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:79:0,79,0:0:0:79,0:2826,0:-254.579,-23.7814,0,-254.579,-23.7814,-254.579	1/2:60:0,28,31:0:0:28,31:1008,1082:-170.249,-87.9961,-79.5673,-82.2477,0,-72.9158	1/1:100:0,100,0:0:0:100,0:3545,0:-319.259,-30.103,0,-319.259,-30.103,-319.259	1/2:68:0,26,42:0:0:26,42:928,1472:-195.787,-120.13,-112.303,-76.0115,0,-63.3682	1/1:33:0,33,0:0:0:33,0:1175,0:-106.057,-9.93399,0,-106.057,-9.93399,-106.057	1/1:101:1,100,0:1:36:100,0:3580,0:-318.809,-26.8058,0,-319.11,-30.103,-322.047	1/2:69:0,38,30:0:0:38,30:1360,1056:-196.985,-86.0756,-74.6365,-111.018,0,-101.988	1/2:24:0,16,8:0:0:16,8:576,276:-69.7746,-22.7659,-17.9495,-47.3585,0,-44.9503	1/2:49:0,21,28:0:0:21,28:752,990:-142.313,-80.9841,-74.6625,-61.6846,0,-53.2558	1/1:65:0,65,0:0:0:65,0:2320,0:-209.061,-19.567,0,-209.061,-19.567,-209.061	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/1:25:0,25,0:0:0:25,0:884,0:-79.8784,-7.52575,0,-79.8784,-7.52575,-79.8784	1/2:25:0,14,11:0:0:14,11:500,395:-73.3445,-32.5808,-28.3664,-41.1218,0,-37.8104	1/2:137:0,79,58:0:0:79,58:2812,2031:-394.789,-165.602,-141.821,-229.539,0,-212.079	1/1:115:0,114,1:0:0:114,1:4063,36:-365.498,-34.3174,0,-362.561,-31.0202,-362.26	1/2:124:0,39,85:0:0:39,85:1385,2926:-350.844,-237.989,-226.248,-113.207,0,-87.6191	1/1:76:0,75,1:0:0:75,1:2688,29:-241.874,-22.5773,0,-239.566,-19.9786,-239.265	1/2:47:0,22,23:0:0:22,23:780,810:-129.503,-65.9556,-59.3329,-63.5593,0,-56.6356	1/2:73:0,41,29:0:0:41,29:1472,1022:-203.36,-83.2751,-70.9329,-120.149,0,-111.419	1/2:163:0,74,89:0:0:74,89:2647,3120:-470.079,-254.234,-231.958,-216.2,0,-189.408	1/1:169:1,167,0:1:36:167,0:5958,0:-532.77,-47.2947,0,-533.071,-50.272,-536.009	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:186:0,94,91:0:0:94,91:3351,3221:-535.624,-262.468,-234.172,-273.259,0,-245.866	1/1:79:0,77,1:0:0:77,1:2768,36:-249.054,-23.1793,0,-246.117,-20.187,-245.816	1/1:58:0,57,0:0:0:57,0:2014,0:-181.251,-17.1587,0,-181.251,-17.1587,-181.251	1/2:7:0,1,6:0:0:1,6:36,215:-20.8306,-17.893,-17.592,-3.29724,0,-1.49106	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	.:.:.:.:.:.:.:.	1/2:17:0,11,6:0:0:11,6:392,214:-49.754,-17.8016,-14.4903,-32.3087,0,-30.5025	1/1:4:0,4,0:0:0:4,0:144,0:-12.9538,-1.20412,0,-12.9538,-1.20412,-12.9538	1/2:141:1,66,72:1:36:66,72:2368,2553:-397.904,-205.052,-188.121,-190.216,0,-171.479	1/2:106:0,58,47:0:0:58,47:2078,1658:-304.533,-135.057,-117.598,-169.529,0,-155.381	1/2:36:0,18,18:0:0:18,18:648,638:-105.206,-52.3302,-46.9116,-53.2333,0,-47.8148	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/2:106:0,60,46:0:0:60,46:2135,1625:-306.693,-132.691,-114.629,-174.356,0,-160.508	1/2:37:0,17,20:0:0:17,20:608,714:-108.144,-58.567,-53.4495,-49.9345,0,-43.9139	1/2:60:0,17,42:0:0:17,42:612,1457:-168.358,-118.419,-113.301,-49.9361,0,-37.2928	1/2:54:0,26,28:0:0:26,28:923,971:-154.48,-79.271,-71.4442,-75.56,0,-67.1311	1/2:50:0,24,25:0:0:24,25:860,869:-140.841,-70.6961,-63.4714,-70.1948,0,-62.6691	1/1:103:0,103,0:0:0:103,0:3685,0:-331.851,-31.0061,0,-331.851,-31.0061,-331.851	1/1:89:0,89,0:0:0:89,0:3160,0:-284.624,-26.7917,0,-284.624,-26.7917,-284.624	1/2:78:0,42,36:0:0:42,36:1499,1256:-224.711,-102.503,-89.8595,-122.561,0,-111.723	1/1:55:0,54,0:0:0:54,0:1932,0:-173.797,-16.2556,0,-173.797,-16.2556,-173.797	1/2:60:0,31,29:0:0:31,29:1108,1023:-173.996,-83.6523,-74.3203,-90.6985,0,-81.9686	1/2:91:0,49,42:0:0:49,42:1745,1454:-260.741,-118.509,-103.759,-142.583,0,-129.939	1/2:2:0,1,1:0:0:1,1:36,34:-6.04527,-3.09788,-2.79685,-3.29724,0,-2.99621	1/2:63:0,31,31:0:0:31,31:1116,1080:-178.881,-87.8154,-78.4834,-91.0599,0,-81.728	1/1:49:0,48,0:0:0:48,0:1719,0:-154.743,-14.4494,0,-154.743,-14.4494,-154.743	1/2:10:0,5,5:0:0:5,5:180,179:-29.6433,-14.9552,-13.4501,-15.0469,0,-13.5418	1/2:145:0,70,73:0:0:70,73:2508,2545:-411.512,-206.965,-185.893,-204.54,0,-182.565	1/2:33:0,10,21:0:0:10,21:356,710:-86.6469,-57.6243,-54.614,-29.095,0,-22.7734	1/2:4:0,1,3:0:0:1,3: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chr07	22861820	.	C	T	122239	PASS	AB=0.50479;ABP=3.94648;AC=134;AF=0.712766;AN=188;AO=5951;CIGAR=1X;DP=8285;DPB=8285;DPRA=0;EPP=12925.4;EPPR=5062.54;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9906;MQMR=60;NS=94;NUMALT=1;ODDS=2.10195;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212075;QR=82160;RO=2330;RPL=0;RPP=12925.4;RPPR=5062.54;RPR=5951;RUN=1;SAF=0;SAP=12925.4;SAR=5951;SRF=0;SRP=5062.54;SRR=2330;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:84:42,42:42:1474:42:1500:-110.008,0,-107.666	0/1:62:14,48:14:492:48:1711:-135.611,0,-25.9485	0/1:156:103,53:103:3609:53:1872:-121.796,0,-278.055	0/1:228:109,119:109:3851:119:4268:-315.663,0,-278.152	1/1:65:0,65:0:0:65:2311:-208.25,-19.567,0	1/1:37:0,37:0:0:37:1311:-118.291,-11.1381,0	1/1:85:0,85:0:0:85:3043:-274.1,-25.5876,0	0/1:88:36,52:36:1253:52:1836:-139.029,0,-86.5792	1/1:106:0,106:0:0:106:3804:-342.557,-31.9092,0	0/1:51:29,22:29:1031:22:780:-55.1705,0,-77.7501	1/1:53:0,53:0:0:53:1890:-170.377,-15.9546,0	1/1:141:0,141:0:0:141:5018:-451.769,-42.4452,0	0/1:93:43,50:43:1521:50:1772:-131.767,0,-109.185	0/1:73:39,34:39:1391:34:1216:-87.7714,0,-103.513	0/1:61:32,28:32:1140:28:1008:-72.6147,0,-84.4877	1/1:87:0,87:0:0:87:3084:-277.787,-26.1896,0	1/1:27:0,27:0:0:27:953:-86.0833,-8.12781,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:24:14,10:14:482:10:360:-25.5196,0,-36.4813	0/1:130:52,78:52:1855:78:2788:-212.027,0,-128.095	1/1:182:0,182:0:0:182:6481:-583.378,-54.7875,0	0/1:80:41,39:41:1463:39:1374:-99.8747,0,-107.883	1/1:131:0,131:0:0:131:4690:-422.26,-39.4349,0	0/1:56:18,37:18:635:37:1310:-101.284,0,-40.5609	0/1:83:43,40:43:1501:40:1432:-104.192,0,-110.395	0/1:261:121,140:121:4238:140:5007:-372.208,0,-303.034	1/1:244:0,244:0:0:244:8665:-779.85,-73.4513,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:226:128,98:128:4540:98:3459:-243.49,0,-340.736	1/1:101:3,98:3:108:98:3490:-304.236,-20.3289,0	1/1:78:2,76:2:72:76:2707:-237.037,-16.6436,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:33:12,21:12:419:21:752:-58.0723,0,-28.1087	0/1:209:94,115:94:3314:115:4096:-305.912,0,-235.566	0/1:117:56,61:56:1979:61:2188:-161.965,0,-143.164	0/1:80:42,38:42:1487:38:1364:-98.9783,0,-110.041	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:83:31,52:31:1099:52:1847:-141.524,0,-74.234	0/1:38:15,23:15:536:23:820:-62.6834,0,-37.1357	0/1:193:77,116:77:2679:116:4130:-313.786,0,-183.255	0/1:54:29,25:29:1024:25:900:-65.0654,0,-76.217	0/1:60:26,34:26:919:34:1216:-91.6848,0,-64.9644	1/1:155:0,155:0:0:155:5519:-496.838,-46.6597,0	1/1:111:0,111:0:0:111:3976:-358.03,-33.4143,0	0/1:132:69,63:69:2463:63:2230:-161.227,0,-182.188	1/1:108:0,108:0:0:108:3857:-347.325,-32.5112,0	0/1:51:28,23:28:975:23:828:-59.4916,0,-72.709	0/1:131:56,75:56:1987:75:2651:-199.399,0,-139.669	0/1:14:11,3:11:392:3:108:-5.86075,0,-31.4056	0/1:87:40,47:40:1424:47:1682:-125.477,0,-102.268	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:16:4,12:4:129:12:428:-34.0423,0,-7.11118	0/1:122:57,65:57:2006:65:2316:-171.975,0,-144.087	0/1:62:24,38:24:852:38:1347:-102.866,0,-58.3365	0/1:15:8,7:8:271:7:248:-18.1487,0,-20.204	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	1/1:110:0,110:0:0:110:3933:-354.161,-33.1133,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:145:0,145:0:0:145:5143:-463.015,-43.6494,0	1/1:183:1,182:1:36:182:6484:-580.048,-51.4902,0	0/1:34:17,17:17:612:17:599:-44.0031,0,-45.1784	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	0/1:164:88,75:88:3112:75:2665:-190.324,0,-231.028	0/1:171:115,56:115:4074:56:2004:-129.157,0,-315.373	1/1:32:0,32:0:0:32:1112:-100.384,-9.63296,0	1/1:96:0,96:0:0:96:3412:-307.294,-28.8989,0	0/1:48:30,18:30:1067:18:644:-43.8412,0,-81.8918	0/1:24:14,10:14:491:10:360:-25.5196,0,-37.2964	1/1:182:0,182:0:0:182:6515:-586.433,-54.7875,0	0/1:78:32,46:32:1116:46:1640:-124.408,0,-77.2642	1/1:123:1,122:1:36:122:4343:-387.449,-33.4284,0	1/1:153:0,153:0:0:153:5474:-492.787,-46.0576,0	0/1:104:46,58:46:1628:58:2076:-155.803,0,-115.502	1/1:77:1,76:1:36:76:2707:-240.276,-19.581,0	1/1:21:0,21:0:0:21:737:-66.6506,-6.32163,0	1/1:83:0,83:0:0:83:2953:-265.993,-24.9855,0	0/1:53:29,24:29:1022:24:860:-61.7672,0,-76.3363	0/1:165:75,89:75:2621:89:3175:-236.246,0,-186.408	0/1:62:32,30:32:1128:30:1068:-77.7682,0,-83.1644	0/1:62:25,37:25:883:37:1320:-100.438,0,-61.1236	0/1:53:31,22:31:1081:22:784:-54.9293,0,-81.642	0/1:140:68,72:68:2386:72:2571:-189.495,0,-172.854	1/1:30:0,30:0:0:30:1054:-95.1692,-9.0309,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:89:0,89:0:0:89:3173:-285.793,-26.7917,0	0/1:45:19,26:19:652:26:927:-70.201,0,-45.4519	0/1:125:77,48:77:2705:48:1706:-116.196,0,-206.066	0/1:90:71,19:71:2503:19:680:-34.4227,0,-198.431	1/1:121:0,121:0:0:121:4306:-387.718,-36.4246,0	1/1:99:0,99:0:0:99:3516:-316.65,-29.802,0
chr07	22891428	.	A	G	24953.1	PASS	AB=0.454864;ABP=63.5812;AC=55;AF=0.292553;AN=188;AO=1568;CIGAR=1X;DP=5995;DPB=5995;DPRA=1.22589;EPP=3407.88;EPPR=9585.74;GTI=3;LEN=1;MEANALT=1.01695;MQM=54.419;MQMR=59.9202;NS=94;NUMALT=1;ODDS=1.88615;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56121;QR=158191;RO=4425;RPL=0;RPP=3407.88;RPPR=9585.74;RPR=1568;RUN=1;SAF=1568;SAP=3407.88;SAR=0;SRF=4425;SRP=9611.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:10,4:10:356:4:144:-9.06573,0,-28.1382	0/1:88:52,36:52:1872:36:1288:-89.412,0,-142.268	0/1:65:21,44:21:756:44:1561:-120.75,0,-48.8003	0/1:115:63,52:63:2234:52:1868:-133.572,0,-166.702	0/0:52:52,0:52:1857:0:0:0,-15.6536,-167.408	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:105:104,1:104:3729:1:36:0,-28.0125,-332.212	0/1:94:34,60:34:1220:60:2160:-165.88,0,-81.81	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:54:20,34:20:701:34:1215:-93.2363,0,-47.1561	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:23:11,12:11:396:12:432:-32.1933,0,-29.0591	0/1:31:17,14:17:612:14:504:-36.2978,0,-46.0815	0/1:18:9,9:9:324:9:324:-24.066,0,-24.0873	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	0/1:162:81,81:81:2889:81:2912:-212.681,0,-211.464	0/0:102:102,0:102:3634:0:0:0,-30.7051,-327.244	0/1:78:37,41:37:1328:41:1457:-107.408,0,-96.3419	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:60:32,28:32:1148:28:1008:-72.4734,0,-85.568	0/1:67:35,32:35:1244:32:1148:-82.6973,0,-92.0957	0/1:228:132,96:132:4701:96:3440:-240.609,0,-354.616	0/0:176:176,0:176:6301:0:0:0,-52.9813,-567.181	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:186:104,82:104:3691:82:2907:-205.728,0,-276.397	0/0:105:103,2:103:3692:2:72:0,-24.7811,-325.655	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.87105	0/1:5:4,1:4:144:1:36:-2.08802,0,-11.8085	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:3,5:3:108:5:180:-14.1022,0,-7.66693	0/1:50:38,12:38:1349:12:432:-24.1563,0,-106.657	0/1:171:86,85:86:3088:85:3039:-221.587,0,-226.671	0/1:21:13,8:13:468:8:288:-19.8797,0,-36.138	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:87:46,41:46:1636:41:1472:-106.353,0,-121.337	0/1:16:10,6:10:360:6:216:-14.946,0,-27.9278	0/1:122:69,53:69:2472:53:1904:-134.041,0,-186.004	0/1:18:11,7:11:396:7:252:-17.5938,0,-30.5642	0/1:14:12,2:12:432:2:72:-2.61737,0,-34.9176	0/0:83:83,0:83:2957:0:0:0,-24.9855,-265.679	0/0:76:76,0:76:2702:0:0:0,-22.8783,-243.408	0/1:124:74,50:74:2641:50:1796:-124.302,0,-200.607	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.156	0/1:102:58,44:58:2084:44:1584:-111.706,0,-157.125	0/1:174:101,73:101:3597:73:2605:-182.2,0,-271.557	0/1:5:1,4:1:36:4:144:-11.7989,0,-2.09312	0/1:136:81,55:81:2904:55:1976:-136.72,0,-220.653	0/0:63:62,1:62:2220:1:36:0,-15.4288,-195.339	0/1:15:9,6:9:324:6:216:-15.2253,0,-24.9904	0/1:57:42,15:42:1504:15:540:-31.7084,0,-118.496	0/1:6:3,3:3:89:3:108:-8.26172,0,-6.49818	1/1:2:0,2:0:0:2:72:-6.83481,-0.60206,0	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:124:124,0:124:4418:0:0:0,-37.3277,-397.786	0/0:84:83,1:83:2988:1:36:0,-21.6908,-265.555	0/1:13:5,8:5:180:8:288:-22.3305,0,-12.6387	0/0:142:142,0:142:5073:0:0:0,-42.7463,-456.712	0/0:173:171,2:171:6076:2:72:0,-45.2464,-540.109	0/1:50:30,20:30:1072:20:716:-49.4773,0,-81.741	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:87:44,43:44:1576:43:1527:-111.355,0,-115.942	0/1:113:52,61:52:1872:61:2169:-160.606,0,-134.657	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.884	0/1:54:31,23:31:1112:23:828:-58.5676,0,-84.1357	0/1:22:14,8:14:504:8:288:-19.5805,0,-39.0754	0/0:123:122,0:122:4369:0:0:0,-36.7257,-393.014	0/1:55:35,20:35:1241:20:689:-45.3028,0,-95.4359	0/0:153:153,0:153:5450:0:0:0,-46.0576,-490.626	0/0:84:83,1:83:2960:1:36:0,-21.6908,-263.038	0/1:98:40,58:40:1432:58:2084:-157.492,0,-99.6767	0/0:94:94,0:94:3361:0:0:0,-28.2968,-302.705	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/1:86:56,30:56:2008:30:1072:-70.302,0,-155.1	0/1:190:110,80:110:3929:80:2848:-198.487,0,-296.606	0/1:66:32,34:32:1148:34:1224:-90.2539,0,-82.2047	0/1:18:11,7:11:396:7:252:-17.5938,0,-30.5642	0/1:28:18,10:18:644:10:360:-24.2072,0,-49.8618	0/1:44:19,25:19:680:25:892:-67.09,0,-48.2838	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.453	0/1:24:18,6:18:640:6:216:-12.5377,0,-50.7046	0/1:41:25,16:25:892:16:576:-39.6295,0,-68.2575	0/1:16:3,12:3:108:12:432:-34.2333,0,-5.19989	0/0:73:73,0:73:2593:0:0:0,-21.9752,-233.618	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374
chr07	22892939	.	GTGA	ATGG,GTGG	175564	PASS	AB=0.487508,0.50795;ABP=9.57494,5.66871;AC=133,49;AF=0.730769,0.269231;AN=182;AO=5638,2475;CIGAR=1X2M1X,3M1X;DP=8142;DPB=8142;DPRA=0,1.48628;EPP=11317.3,4976.92;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.94505,2.44828;MQM=56.4496,59.8323;MQMR=0;NS=91;NUMALT=2;ODDS=0.234491;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=198152,88563;QR=0;RO=0;RPL=109,47;RPP=11317.3,4976.92;RPPR=0;RPR=5529,2428;RUN=1,1;SAF=5638,2475;SAP=12245.8,5377.4;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:47:0,18,29:0:0:18,29:638,1036:-136.722,-84.824,-79.4055,-52.2528,0,-43.5229	1/2:105:0,48,55:0:0:48,55:1696,1964:-297.472,-160.122,-145.672,-137.348,0,-120.791	1/2:105:0,52,53:0:0:52,53:1826,1870:-301.041,-152.623,-136.97,-148.77,0,-132.815	1/2:138:0,64,73:0:0:64,73:2270,2581:-394.782,-210.094,-190.828,-184.682,0,-162.706	1/1:32:0,32,0:0:0:32,0:1133,0:-102.189,-9.63296,0,-102.189,-9.63296,-102.189	1/1:38:0,38,0:0:0:38,0:1315,0:-118.402,-11.4391,0,-118.402,-11.4391,-118.402	1/1:134:0,134,0:0:0:134,0:4720,0:-424.454,-40.338,0,-424.454,-40.338,-424.454	1/2:118:0,61,56:0:0:61,56:2122,2016:-336.941,-164.509,-146.146,-172.487,0,-155.629	1/1:32:0,32,0:0:0:32,0:1127,0:-101.712,-9.63296,0,-101.712,-9.63296,-101.712	1/2:75:0,40,34:0:0:40,34:1400,1224:-213.691,-99.8701,-87.8289,-113.816,0,-103.581	1/1:124:0,124,0:0:0:124,0:4372,0:-393.323,-37.3277,0,-393.323,-37.3277,-393.323	1/1:113:0,113,0:0:0:113,0:3987,0:-358.421,-34.0164,0,-358.421,-34.0164,-358.421	1/2:92:0,37,54:0:0:37,54:1303,1918:-262.377,-156.329,-145.19,-106.091,0,-89.8349	1/2:175:0,73,101:0:0:73,101:2565,3628:-504.498,-295.965,-273.99,-208.535,0,-178.131	1/2:79:0,33,46:0:0:33,46:1181,1643:-230.461,-134.31,-124.377,-96.508,0,-82.6607	1/1:72:0,72,0:0:0:72,0:2549,0:-229.424,-21.6742,0,-229.424,-21.6742,-229.424	1/1:111:0,111,0:0:0:111,0:3850,0:-345.912,-33.4143,0,-345.912,-33.4143,-345.912	1/1:85:0,85,0:0:0:85,0:3009,0:-270.531,-25.5876,0,-270.531,-25.5876,-270.531	1/2:71:0,40,30:0:0:40,30:1401,1080:-201.924,-88.1226,-76.0814,-113.798,0,-104.767	1/2:137:0,69,67:0:0:69,67:2435,2391:-392.901,-194.887,-174.116,-198.008,0,-177.839	1/1:112:0,112,0:0:0:112,0:3942,0:-354.307,-33.7154,0,-354.307,-33.7154,-354.307	1/2:84:0,17,67:0:0:17,67:599,2408:-245.054,-196.805,-191.688,-48.5999,0,-28.4308	1/1:25:0,24,1:0:0:24,1:844,36:-75.5299,-7.22472,0,-72.5921,-3.92748,-72.2911	1/2:65:0,44,20:0:0:44,20:1534,707:-182.212,-57.5746,-44.3293,-124.63,0,-118.609	1/2:38:0,16,22:0:0:16,22:569,792:-111.19,-64.9116,-60.0951,-46.6353,0,-40.0126	1/2:214:0,104,110:0:0:104,110:3656,3952:-620.233,-322.752,-291.445,-297.836,0,-264.723	1/1:143:0,142,1:0:0:142,1:4977,36:-447.275,-42.7463,0,-444.338,-39.449,-444.037	1/1:44:0,43,0:0:0:43,0:1486,0:-133.593,-12.9443,0,-133.593,-12.9443,-133.593	1/2:189:0,79,110:0:0:79,110:2796,3929:-548.164,-320.684,-296.903,-227.835,0,-194.721	1/1:95:0,95,0:0:0:95,0:3352,0:-301.605,-28.5979,0,-301.605,-28.5979,-301.605	1/1:114:0,110,2:0:0:110,2:3847,72:-345.876,-33.1133,0,-340.001,-27.2113,-339.399	1/1:1:0,1,0:0:0:1,0:36,0:-3.59656,-0.30103,0,-3.59656,-0.30103,-3.59656	1/1:15:0,15,0:0:0:15,0:540,0:-48.9133,-4.51545,0,-48.9133,-4.51545,-48.9133	1/2:7:0,6,1:0:0:6,1:214,36:-20.7335,-3.29624,-1.49006,-17.7965,0,-17.4955	1/2:10:0,7,3:0:0:7,3:248,108:-29.3656,-9.17208,-7.06487,-20.5516,0,-19.6485	1/2:4:0,2,2:0:0:2,2:70,72:-11.9237,-6.23466,-5.6326,-6.04382,0,-5.44176	1/2:273:0,118,152:0:0:118,152:4164,5449:-783.432,-444.472,-408.951,-339.011,0,-293.254	1/2:147:0,69,77:0:0:69,77:2432,2772:-423.822,-226.239,-205.468,-197.639,0,-174.46	1/2:129:0,71,58:0:0:71,58:2488,2075:-371.925,-169.558,-148.185,-202.721,0,-185.261	.:.:.:.:.:.:.:.	1/2:74:0,36,38:0:0:36,38:1261,1368:-214.459,-111.977,-101.14,-102.836,0,-91.3974	1/2:56:0,35,21:0:0:35,21:1239,756:-162.863,-62.0447,-51.5086,-101.176,0,-94.8544	1/2:61:0,37,24:0:0:37,24:1300,864:-176.595,-70.8578,-59.7197,-106.093,0,-98.8688	1/2:61:0,42,19:0:0:42,19:1483,684:-176.665,-56.1708,-43.5275,-120.851,0,-115.132	1/2:80:0,32,48:0:0:32,48:1113,1724:-231.401,-140.994,-131.361,-90.7597,0,-76.3103	1/1:71:0,71,0:0:0:71,0:2488,0:-223.862,-21.3731,0,-223.862,-21.3731,-223.862	1/1:87:0,83,2:0:0:83,2:2908,72:-261.436,-24.9855,0,-255.561,-19.1107,-254.959	1/2:138:0,71,67:0:0:71,67:2517,2404:-401.086,-196.44,-175.067,-205.001,0,-184.832	1/1:76:0,76,0:0:0:76,0:2660,0:-238.806,-22.8783,0,-238.806,-22.8783,-238.806	1/2:129:0,56,73:0:0:56,73:1961,2624:-373.781,-214.425,-197.567,-159.711,0,-137.735	1/2:125:0,73,51:0:0:73,51:2586,1836:-360.145,-149.841,-127.866,-210.362,0,-195.009	1/2:7:0,4,3:0:0:4,3:137,108:-20.2527,-9.17208,-7.96796,-11.4327,0,-10.5296	1/2:94:0,39,55:0:0:39,55:1357,1980:-272.108,-161.916,-150.176,-110.545,0,-93.988	1/1:40:0,40,0:0:0:40,0:1406,0:-126.801,-12.0412,0,-126.801,-12.0412,-126.801	.:.:.:.:.:.:.:.	1/2:129:0,69,59:0:0:69,59:2396,2120:-367.486,-173.009,-152.238,-194.532,0,-176.771	1/1:6:0,6,0:0:0:6,0:205,0:-18.7735,-1.80618,0,-18.7735,-1.80618,-18.7735	1/1:5:0,5,0:0:0:5,0:179,0:-16.456,-1.50515,0,-16.456,-1.50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chr07	22987546	.	A	G	33330	PASS	AB=0.533905;ABP=39.0863;AC=55;AF=0.295699;AN=186;AO=1938;CIGAR=1X;DP=6130;DPB=6130;DPRA=1.18034;EPP=4185.31;EPPR=8986.74;GTI=3;LEN=1;MEANALT=1.05085;MQM=59.9871;MQMR=60;NS=93;NUMALT=1;ODDS=0.414592;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69288;QR=150043;RO=4189;RPL=1936;RPP=4193.97;RPPR=8995.38;RPR=2;RUN=1;SAF=1;SAP=4202.64;SAR=1937;SRF=1;SRP=9090.62;SRR=4188;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	0/1:94:47,47:47:1680:47:1669:-122.198,0,-123.19	0/1:41:17,24:17:612:24:864:-65.7403,0,-43.0712	0/1:156:70,86:70:2508:86:3071:-229.658,0,-179.012	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:104:42,62:42:1504:62:2213:-168.127,0,-104.347	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:74:24,50:24:864:50:1792:-139.286,0,-55.8063	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/1:78:40,37:40:1436:37:1328:-96.2831,0,-105.999	0/1:83:40,43:40:1436:43:1539:-113.817,0,-104.552	0/1:78:45,33:45:1611:33:1184:-83.388,0,-121.799	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:37:15,22:15:540:22:783:-59.6548,0,-37.7984	0/1:72:32,40:32:1148:40:1436:-107.864,0,-81.9557	0/0:133:132,1:132:4736:1:36:0,-36.4387,-422.799	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/1:56:17,39:17:603:39:1400:-109.442,0,-37.7418	0/1:9:7,2:7:252:2:68:-3.74844,0,-20.3197	0/1:177:73,104:73:2620:104:3729:-282.528,0,-182.765	0/0:111:109,1:109:3862:1:36:0,-29.7999,-344.248	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:141:66,75:66:2372:75:2680:-199,0,-171.292	0/0:84:81,3:81:2916:3:108:0,-15.2113,-252.599	0/0:65:64,1:64:2288:1:36:0,-15.9687,-202.583	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:197:92,105:92:3304:105:3751:-278.487,0,-238.275	0/1:64:29,35:29:1040:35:1252:-93.7192,0,-74.6484	0/1:81:52,29:52:1872:29:1044:-69.8914,0,-144.376	.:.:.:.:.:.:.:.	0/1:77:36,41:36:1296:41:1467:-109.146,0,-93.7646	0/1:29:13,16:13:468:16:572:-43.0836,0,-33.7298	0/1:37:15,22:15:536:22:788:-60.092,0,-37.4367	0/1:107:59,47:59:2116:47:1671:-118.554,0,-158.587	0/1:87:42,45:42:1512:45:1612:-119.18,0,-110.185	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:56:27,29:27:957:29:1040:-77.0567,0,-69.5862	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:114:57,57:57:2048:57:2012:-147.036,0,-150.274	0/1:64:24,40:24:860:40:1436:-110.272,0,-58.4559	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:46:21,25:21:752:25:900:-67.4736,0,-54.1589	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:100:54,46:54:1936:46:1652:-118.865,0,-144.413	0/1:36:23,13:23:824:13:459:-30.807,0,-63.6462	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.477	0/0:92:92,0:92:3278:0:0:0,-27.6948,-295.237	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/0:216:216,0:216:7695:0:0:0,-65.0225,-692.584	0/0:112:110,2:110:3952:2:72:0,-26.8786,-349.033	0/1:61:27,34:27:968:34:1224:-92.1042,0,-69.0745	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.666	0/1:64:29,35:29:1044:35:1252:-93.7192,0,-75.0089	0/1:94:29,65:29:1032:65:2311:-179.954,0,-64.8967	0/1:21:19,2:19:680:2:72:-0.515093,0,-55.2075	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:86:42,44:42:1493:44:1567:-115.432,0,-108.774	0/1:18:15,3:15:536:3:108:-4.65663,0,-43.1563	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:76:35,41:35:1252:41:1456:-108.457,0,-90.1068	0/0:59:59,0:59:2111:0:0:0,-17.7608,-190.258	0/0:174:174,0:174:6225:0:0:0,-52.3792,-560.345	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.49	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.964	0/1:37:18,19:18:648:19:684:-50.7522,0,-47.5138	0/1:90:50,40:50:1796:40:1428:-101.725,0,-134.83	0/1:115:61,54:61:2192:54:1936:-139.898,0,-162.927	0/1:63:33,30:33:1188:30:1076:-78.188,0,-88.2637	0/1:112:57,55:57:2037:55:1967:-143.589,0,-149.885	0/1:155:70,85:70:2516:85:3041:-227.26,0,-180.032	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:60:24,36:24:860:36:1288:-98.1618,0,-59.66	0/1:69:34,35:34:1224:35:1252:-92.214,0,-89.696	0/1:123:20,103:20:716:103:3670:-293.477,0,-27.741	0/0:101:101,0:101:3607:0:0:0,-30.404,-324.836	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261
chr07	23048119	.	G	A	122158	PASS	AB=0.471429;ABP=39.2429;AC=133;AF=0.707447;AN=188;AO=5966;CIGAR=1X;DP=8681;DPB=8681;DPRA=31.1039;EPP=12958;EPPR=5894.21;GTI=4;LEN=1;MEANALT=1.02151;MQM=59.9445;MQMR=59.9926;NS=94;NUMALT=1;ODDS=0.71245;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213607;QR=97005;RO=2713;RPL=0;RPP=12958;RPPR=5894.21;RPR=5966;RUN=1;SAF=5966;SAP=12958;SAR=0;SRF=2713;SRP=5894.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:29,26:29:1044:26:904:-65.0855,0,-77.7182	0/1:61:42,19:42:1508:19:680:-43.1663,0,-117.652	0/1:248:107,141:107:3825:141:5062:-381.068,0,-269.79	0/1:222:144,78:144:5165:78:2789:-184.417,0,-398.159	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:89:0,89:0:0:89:3184:-286.784,-26.7917,0	0/1:96:46,50:46:1656:50:1796:-133.015,0,-120.43	1/1:184:0,184:0:0:184:6585:-592.651,-55.3895,0	0/1:98:43,55:43:1544:55:1936:-144.587,0,-109.752	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:107:0,107:0:0:107:3844:-346.137,-32.2102,0	0/1:69:39,30:39:1385:30:1068:-75.6604,0,-104.176	0/1:55:25,30:25:892:30:1080:-80.9551,0,-64.043	0/1:86:38,47:38:1368:47:1688:-126.259,0,-97.4735	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:16:9,7:9:311:7:252:-18.2125,0,-23.5072	0/1:161:90,71:90:3217:71:2556:-181.81,0,-241.285	1/1:137:0,137:0:0:137:4905:-441.6,-41.2411,0	0/1:140:85,55:85:3040:55:1976:-135.97,0,-231.686	1/1:131:0,131:0:0:131:4689:-422.169,-39.4349,0	0/1:42:24,18:24:852:18:648:-46.0086,0,-64.3571	0/1:86:49,37:49:1749:37:1332:-94.2938,0,-131.804	0/1:226:125,100:125:4446:100:3592:-255.394,0,-332.219	1/1:195:0,195:0:0:195:6963:-626.71,-58.7009,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:262:166,96:166:5937:96:3444:-231.302,0,-455.567	0/1:82:9,73:9:305:73:2620:-211.363,0,-3.09275	1/1:74:3,71:3:108:71:2533:-218.145,-12.2011,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:204:96,108:96:3440:108:3872:-287.264,0,-248.403	0/1:123:56,67:56:2000:67:2381:-177.519,0,-143.247	0/1:55:22,33:22:788:33:1184:-90.3117,0,-54.6881	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:131:70,61:70:2496:61:2184:-157.391,0,-185.458	0/1:34:13,21:13:464:21:756:-58.1322,0,-31.8625	0/1:196:120,76:120:4284:76:2724:-186.401,0,-326.737	0/1:53:28,25:28:1004:25:900:-65.3527,0,-74.7213	0/1:61:34,27:34:1220:27:972:-69.4351,0,-91.744	1/1:179:0,179:0:0:179:6424:-578.232,-53.8844,0	1/1:127:1,126:1:36:126:4504:-401.928,-34.6325,0	0/1:199:104,95:104:3725:95:3408:-247.029,0,-275.53	1/1:150:0,150:0:0:150:5373:-483.594,-45.1545,0	0/1:102:63,39:63:2264:39:1381:-93.8819,0,-173.317	0/1:52:29,23:29:1029:23:828:-59.1906,0,-77.2676	0/1:9:5,4:5:172:4:144:-10.6043,0,-13.1087	0/1:104:47,57:47:1688:57:2044:-152.925,0,-120.9	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:110:60,50:60:2125:50:1792:-128.449,0,-158.404	0/1:44:30,14:30:1076:14:504:-32.4528,0,-83.9075	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:68:0,68:0:0:68:2433:-219.224,-20.47,0	1/1:93:0,93:0:0:93:3340:-300.816,-27.9958,0	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3376	1/1:175:1,174:1:21:174:6236:-559.232,-50.5803,0	1/1:145:5,140:5:180:140:4998:-433.096,-27.0973,0	0/1:50:31,19:31:1116:19:680:-46.4777,0,-85.7002	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	0/1:124:52,72:52:1864:72:2560:-193.318,0,-130.712	0/1:135:87,48:87:3132:48:1724:-114.793,0,-241.466	1/1:43:1,42:1:36:42:1512:-132.773,-9.34602,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:34:16,18:16:576:18:633:-47.06,0,-41.94	0/1:21:11,10:11:388:10:360:-26.4227,0,-28.9357	1/1:239:0,239:0:0:239:8566:-770.935,-71.9462,0	0/1:123:72,51:72:2572:51:1817:-126.783,0,-194.703	1/1:191:0,191:0:0:191:6820:-613.865,-57.4967,0	1/1:167:0,167:0:0:167:5977:-538.035,-50.272,0	0/1:166:69,97:69:2476:97:3484:-263.799,0,-173.122	1/1:71:0,71:0:0:71:2533:-228.22,-21.3731,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:107:0,107:0:0:107:3810:-343.096,-32.2102,0	0/1:125:62,63:62:2197:63:2264:-166.394,0,-160.365	0/1:218:115,103:115:4101:103:3689:-266.586,0,-303.65	0/1:73:41,32:41:1468:32:1148:-81.6546,0,-110.441	0/1:73:36,37:36:1296:37:1332:-98.2072,0,-94.9687	0/1:62:35,27:35:1251:27:972:-69.134,0,-94.2304	0/1:169:83,86:83:2964:86:3088:-227.273,0,-216.12	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	0/1:44:25,19:25:896:19:684:-48.645,0,-67.715	0/1:95:41,54:41:1468:54:1936:-145.919,0,-103.818	0/1:77:58,19:58:2084:19:661:-36.6267,0,-164.651	1/1:112:0,112:0:0:112:3973:-357.754,-33.7154,0	1/1:103:0,103:0:0:103:3700:-333.196,-31.0061,0
chr07	23048236	.	A	G	136639	PASS	AB=0.508889;ABP=6.90947;AC=130;AF=0.698925;AN=186;AO=6675;CIGAR=1X;DP=9490;DPB=9490;DPRA=25.7772;EPP=14497.6;EPPR=6107.02;GTI=3;LEN=1;MEANALT=1.03261;MQM=59.9898;MQMR=60;NS=93;NUMALT=1;ODDS=0.859858;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238901;QR=100459;RO=2811;RPL=6675;RPP=14497.6;RPPR=6107.02;RPR=0;RUN=1;SAF=0;SAP=14497.6;SAR=6675;SRF=0;SRP=6107.02;SRR=2811;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:21,8:21:756:8:284:-17.1735,0,-59.6374	0/1:173:85,88:85:3028:88:3160:-232.546,0,-220.673	0/1:63:28,35:28:1004:35:1244:-93.2998,0,-71.711	0/1:148:68,80:68:2428:80:2869:-213.893,0,-174.224	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	1/1:127:0,127:0:0:127:4540:-408.767,-38.2308,0	0/1:222:130,92:130:4651:92:3304:-230.749,0,-351.923	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:110:52,58:52:1860:58:2076:-153.997,0,-134.566	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:74:0,74:0:0:74:2645:-238.295,-22.2762,0	0/1:90:50,40:50:1792:40:1427:-101.634,0,-134.47	0/1:129:75,54:75:2683:54:1932:-135.324,0,-202.881	0/1:54:22,32:22:788:32:1148:-87.3742,0,-54.9892	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:82:0,82:0:0:82:2932:-264.113,-24.6845,0	1/1:61:2,59:2:72:59:2120:-184.232,-11.5261,0	0/1:51:25,26:25:900:26:932:-68.8463,0,-65.9685	0/1:210:81,129:81:2908:129:4620:-352.747,0,-198.739	1/1:128:0,128:0:0:128:4572:-411.642,-38.5318,0	0/1:90:57,33:57:2048:33:1184:-79.7756,0,-157.499	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:157:59,98:59:2108:98:3504:-268.309,0,-142.728	0/1:99:39,60:39:1400:60:2129:-162.075,0,-96.4972	0/1:359:191,168:191:6836:168:6020:-433.831,0,-507.241	1/1:193:0,193:0:0:193:6912:-622.147,-58.0988,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	0/1:177:107,70:107:3824:70:2500:-171.971,0,-291.075	1/1:226:7,219:7:244:219:7813:-680.831,-45.7334,0	1/1:57:3,52:3:108:52:1868:-158.324,-6.84131,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:19:1,18:1:36:18:640:-54.331,-2.1213,0	.:.:.:.:.:.:.:.	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:190:83,107:83:2960:107:3832:-287.881,0,-209.438	0/1:222:104,118:104:3717:118:4228:-313.871,0,-267.901	0/1:76:33,43:33:1171:43:1531:-115.204,0,-82.8184	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:140:66,74:66:2364:74:2660:-197.501,0,-170.874	0/1:23:10,13:10:356:13:464:-35.1738,0,-25.4576	0/1:119:42,77:42:1512:77:2764:-213.179,0,-100.552	0/1:86:49,37:49:1748:37:1320:-93.2134,0,-131.716	0/1:62:34,28:34:1209:28:996:-71.291,0,-90.4503	1/1:80:0,80:0:0:80:2880:-259.436,-24.0824,0	1/1:152:0,152:0:0:152:5448:-490.448,-45.7566,0	0/1:158:88,70:88:3140:70:2512:-178.769,0,-235.264	1/1:115:0,115:0:0:115:4112:-370.265,-34.6185,0	0/1:202:111,91:111:3964:91:3268:-233.531,0,-296.144	0/1:134:58,76:58:2072:76:2724:-205.065,0,-146.413	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/1:124:61,63:61:2180:63:2264:-166.695,0,-159.139	1/1:55:1,54:1:36:54:1928:-170.198,-12.9584,0	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:118:65,53:65:2332:53:1896:-135.397,0,-174.618	0/1:28:8,20:8:284:20:716:-56.3389,0,-17.4745	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:85:0,85:0:0:85:3040:-273.83,-25.5876,0	1/1:145:0,144:0:0:144:5135:-461.933,-43.3483,0	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	1/1:211:0,211:0:0:211:7527:-677.472,-63.5173,0	1/1:105:1,104:1:36:104:3701:-329.694,-28.0099,0	0/1:121:64,57:64:2277:57:2028:-146.368,0,-168.766	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	0/1:120:55,65:55:1957:65:2340:-174.735,0,-140.28	0/1:104:49,55:49:1752:55:1972:-146.448,0,-126.657	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:85:0,85:0:0:85:3040:-273.822,-25.5876,0	0/1:106:56,50:56:1996:50:1792:-129.653,0,-148.005	0/1:27:11,16:11:392:16:572:-43.6856,0,-27.4922	1/1:155:1,154:1:36:154:5512:-492.608,-43.0614,0	0/1:165:85,80:85:3024:80:2868:-208.687,0,-222.722	1/1:167:0,166:0:0:166:5948:-535.067,-49.971,0	1/1:195:0,195:0:0:195:6953:-625.837,-58.7009,0	0/1:155:66,89:66:2356:89:3196:-241.203,0,-165.639	1/1:264:0,264:0:0:264:9452:-850.64,-79.4719,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:152:0,152:0:0:152:5432:-489.011,-45.7566,0	0/1:92:39,53:39:1404:53:1908:-144.303,0,-98.9645	0/1:146:80,66:80:2841:66:2356:-168.349,0,-211.977	0/1:131:64,67:64:2292:67:2400:-176.822,0,-167.106	0/1:56:28,28:28:1004:28:1004:-73.8182,0,-73.8182	0/1:102:53,49:53:1892:49:1760:-127.979,0,-139.853	0/1:166:72,94:72:2572:94:3368:-253.336,0,-181.759	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:80:0,80:0:0:80:2852:-256.919,-24.0824,0	1/1:76:1,75:1:36:75:2684:-238.207,-19.28,0	0/1:70:29,41:29:1025:41:1468:-111.344,0,-71.4886	0/1:134:56,78:56:2004:78:2783:-210.367,0,-140.296	0/1:74:57,17:57:2040:17:612:-33.1372,0,-161.596	1/1:112:0,112:0:0:112:4016:-361.626,-33.7154,0	1/1:118:0,118:0:0:118:4232:-381.059,-35.5215,0
chr07	23236873	.	GATTT	AAA,GATTA	145488	PASS	AB=0.539143,0.457312;ABP=48.0595,56.5889;AC=143,45;AF=0.760638,0.239362;AN=188;AO=6447,1559;CIGAR=1X1M2D1X,4M1X;DP=8037;DPB=5455.6;DPRA=86.4086,1.02603;EPP=14002.5,3388.34;EPPR=5.18177;GTI=3;LEN=5,1;MEANALT=1.8172,2.22449;MQM=32.9991,59.9211;MQMR=60;NS=94;NUMALT=2;ODDS=0.772182;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=227635,55763;QR=27;RO=1;RPL=6447,1559;RPP=14002.5,3388.34;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=14002.5,3388.34;SAR=6447,1559;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:49:0,33,16:0:0:33,16:1144,576:-128.808,-47.3585,-37.4245,-81.7925,0,-76.9761	1/2:67:0,30,37:0:0:30,37:1058,1305:-179.403,-106.611,-97.5804,-73.1166,0,-61.9784	1/2:200:0,96,103:0:0:96,103:3394,3696:-541.045,-301.432,-272.533,-239.589,0,-208.583	1/2:149:0,75,74:0:0:75,74:2674,2656:-400.493,-217.01,-194.432,-183.815,0,-161.539	1/1:28:0,28,0:0:0:28,0:977,0:-78.2717,-8.42884,0,-78.2717,-8.42884,-78.2717	1/1:42:0,42,0:0:0:42,0:1485,0:-118.629,-12.6433,0,-118.629,-12.6433,-118.629	1/2:89:0,55,34:0:0:55,34:1955,1220:-236.216,-99.8718,-83.3151,-136.684,0,-126.449	1/1:178:0,176,0:0:0:176,0:6229,0:-492.038,-52.9813,0,-492.038,-52.9813,-492.038	1/1:107:0,107,0:0:0:107,0:3713,0:-297.403,-32.2102,0,-297.403,-32.2102,-297.403	1/2:74:0,48,25:0:0:48,25:1688,900:-191.807,-73.4359,-58.9865,-118.355,0,-110.829	1/1:55:0,55,0:0:0:55,0:1956,0:-151.371,-16.5567,0,-151.371,-16.5567,-151.371	1/2:98:0,58,40:0:0:58,40:2029,1432:-259.561,-117.136,-99.6767,-142.762,0,-130.721	1/2:77:0,43,33:0:0:43,33:1512,1188:-205.447,-97.0317,-84.0874,-108.492,0,-98.5581	1/2:45:0,29,16:0:0:29,16:1022,576:-118.684,-47.3585,-38.6286,-71.6662,0,-66.8497	1/2:82:0,42,39:0:0:42,39:1496,1400:-217.517,-114.279,-101.636,-103.291,0,-91.5513	1/1:66:0,66,0:0:0:66,0:2346,0:-184.35,-19.868,0,-184.35,-19.868,-184.35	1/1:55:0,55,0:0:0:55,0:1933,0:-155.108,-16.5567,0,-155.108,-16.5567,-155.108	1/1:27:0,27,0:0:0:27,0:959,0:-75.8994,-8.12781,0,-75.8994,-8.12781,-75.8994	1/2:28:0,21,7:0:0:21,7:727,252:-72.4793,-20.9217,-14.6001,-51.9041,0,-49.7969	1/2:114:0,63,51:0:0:63,51:2247,1836:-306.745,-150.14,-131.175,-156.942,0,-141.59	1/1:186:0,186,0:0:0:186,0:6580,0:-521.197,-55.9916,0,-521.197,-55.9916,-521.197	1/1:89:0,88,0:0:0:88,0:3088,0:-240.287,-26.4906,0,-240.287,-26.4906,-240.287	1/1:120:0,120,0:0:0:120,0:4207,0:-329.375,-36.1236,0,-329.375,-36.1236,-329.375	1/1:38:0,38,0:0:0:38,0:1308,0:-104.433,-11.4391,0,-104.433,-11.4391,-104.433	1/2:81:0,36,45:0:0:36,45:1285,1578:-219.564,-128.76,-117.923,-91.1338,0,-77.5874	1/2:194:0,127,67:0:0:127,67:4511,2397:-504.77,-195.816,-157.585,-309.293,0,-289.124	1/1:312:0,311,0:0:0:311,0:11043,0:-873.608,-93.6203,0,-873.608,-93.6203,-873.608	1/2:42:0,23,19:0:0:23,19:826,684:-115.128,-56.1708,-49.2471,-59.2988,0,-53.5792	1/1:244:0,243,1:0:0:243,1:8575,36:-666.7,-73.1503,0,-663.763,-69.853,-663.462	1/2:107:0,46,61:0:0:46,61:1628,2192:-294.495,-179.183,-165.335,-115.644,0,-97.2816	1/1:124:0,122,1:0:0:122,1:4333,36:-338.726,-36.7257,0,-335.788,-33.7706,-335.487	1/1:3:0,3,0:0:0:3,0:108,0:-8.92535,-0.90309,0,-8.92535,-0.90309,-8.92535	1/1:8:0,8,0:0:0:8,0:280,0:-22.8273,-2.40824,0,-22.8273,-2.40824,-22.8273	1/1:2:0,2,0:0:0:2,0:64,0:-5.59592,-0.60206,0,-5.59592,-0.60206,-5.59592	1/2:4:0,2,2:0:0:2,2:72,72:-11.3498,-6.23466,-5.6326,-5.45443,0,-4.85237	1/2:14:0,12,2:0:0:12,2:424,72:-35.6286,-6.23466,-2.6223,-29.746,0,-29.144	1/1:233:0,232,1:0:0:232,1:8224,36:-638.411,-69.839,0,-635.473,-66.5417,-635.172	1/2:91:0,45,45:0:0:45,45:1571,1607:-241.649,-131.059,-117.512,-110.611,0,-97.0647	1/2:44:0,20,22:0:0:20,22:718,788:-114.831,-64.3873,-58.3667,-50.541,0,-43.9183	1/1:1:0,1,0:0:0:1,0:36,0:-3.18762,-0.30103,0,-3.18762,-0.30103,-3.18762	1/2:176:0,85,91:0:0:85,91:3029,3260:-477.772,-266.227,-240.639,-211.878,0,-184.484	1/2:34:0,20,14:0:0:20,14:720,504:-91.5782,-41.4837,-35.4631,-50.4346,0,-46.2202	1/2:103:0,65,38:0:0:65,38:2261,1360:-270.287,-111.261,-91.6945,-159.364,0,-147.925	1/2:61:0,39,22:0:0:39,22:1398,784:-161.043,-64.2613,-52.5211,-97.1206,0,-90.4979	1/2:69:0,33,36:0:0:33,36:1169,1273:-185.353,-104.034,-94.0999,-81.6485,0,-70.8114	1/1:157:0,156,0:0:0:156,0:5489,0:-429.745,-46.9607,0,-429.745,-46.9607,-429.745	1/1:95:0,95,0:0:0:95,0:3346,0:-264.439,-28.5979,0,-264.439,-28.5979,-264.439	1/2:142:0,63,79:0:0:63,79:2222,2821:-385.105,-230.117,-211.152,-155.316,0,-131.535	1/1:90:0,89,0:0:0:89,0:3105,0:-240.321,-26.7917,0,-240.321,-26.7917,-240.321	1/1:94:0,92,0:0:0:92,0:3279,0:-257.289,-27.6948,0,-257.289,-27.6948,-257.289	1/1:60:0,60,0:0:0:60,0:2155,0:-164.879,-18.0618,0,-164.879,-18.0618,-164.879	1/2:10:0,7,3:0:0:7,3:243,93:-24.8732,-7.77364,-5.66643,-17.4079,0,-16.5048	1/2:98:0,61,37:0:0:61,37:2176,1332:-264.144,-109.044,-90.6814,-155.443,0,-144.305	1/1:64:0,64,0:0:0:64,0:2244,0:-174.627,-19.2659,0,-174.627,-19.2659,-174.627	1/2:8:0,3,5:0:0:3,5:106,180:-22.6542,-15.0469,-14.1438,-7.93959,0,-6.43444	1/2:116:0,73,43:0:0:73,43:2561,1533:-305.928,-125.309,-103.333,-180.958,0,-168.014	1/2:37:0,16,21:0:0:16,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chr07	23243072	.	TC	TT	173534	PASS	AB=0.483577;ABP=14.8499;AC=141;AF=0.75;AN=188;AO=8152;CIGAR=1M1X;DP=10783;DPB=10783;DPRA=0;EPP=17661.5;EPPR=5655.41;GTI=0;LEN=1;MEANALT=1.10638;MQM=59.9859;MQMR=59.9931;NS=94;NUMALT=1;ODDS=3.30919;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=292039;QR=92636;RO=2619;RPL=8148;RPP=17670.1;RPPR=5655.41;RPR=4;RUN=1;SAF=8151;SAP=17696.2;SAR=1;SRF=2619;SRP=5690.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:211:115,96:115:4080:96:3439:-246.205,0,-303.869	0/1:176:90,86:90:3206:86:3052:-221.927,0,-235.782	0/1:259:149,110:149:5271:110:3948:-277.544,0,-396.56	1/1:71:2,69:2:72:69:2484:-216.976,-14.5364,0	1/1:71:0,70:0:0:70:2520:-226.691,-21.0721,0	0/1:135:87,48:87:3069:48:1713:-113.815,0,-235.8	1/1:252:0,252:0:0:252:9042:-813.754,-75.8596,0	1/1:85:0,85:0:0:85:3048:-274.548,-25.5876,0	0/1:101:45,56:45:1550:56:2016:-151.309,0,-109.381	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	0/1:80:33,47:33:1171:47:1683:-127.674,0,-81.6142	0/1:81:46,35:46:1638:35:1256:-88.9557,0,-123.323	0/1:97:49,48:49:1740:48:1709:-124.894,0,-127.684	0/1:53:23,30:23:828:30:1061:-79.8448,0,-58.8895	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:107:1,106:1:36:106:3816:-340.037,-28.6119,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:65:28,37:28:979:37:1332:-100.615,0,-68.8532	0/1:211:127,84:127:4503:84:2992:-205.991,0,-341.921	1/1:131:0,131:0:0:131:4704:-423.518,-39.4349,0	1/1:177:1,176:1:36:176:6311:-564.482,-49.684,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	0/1:76:40,36:40:1420:36:1288:-93.3453,0,-105.218	0/1:382:185,197:185:6501:197:7044:-519.027,0,-470.183	1/1:238:0,238:0:0:238:8530:-767.696,-71.6451,0	0/1:34:21,13:21:748:13:468:-32.2246,0,-57.4107	1/1:334:0,334:0:0:334:11966:-1076.79,-100.544,0	0/1:203:105,98:105:3752:98:3499:-254.012,0,-276.771	1/1:119:1,118:1:36:118:4228:-377.101,-32.2243,0	0/1:27:16,11:16:563:11:396:-27.8549,0,-42.8711	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:32:15,17:15:534:17:612:-45.7805,0,-38.7611	1/1:223:0,223:0:0:223:7999:-719.928,-67.1297,0	0/1:245:124,121:124:4430:121:4343:-317.291,0,-325.117	0/1:97:62,35:62:2189:35:1251:-83.6944,0,-168.074	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:177:78,99:78:2732:99:3552:-266.605,0,-192.839	0/1:60:25,35:25:885:35:1245:-94.2909,0,-61.9058	0/1:169:69,100:69:2439:100:3576:-271.163,0,-168.891	0/1:61:33,28:33:1157:28:1004:-72.313,0,-86.0712	0/1:57:30,27:30:1078:27:972:-70.6392,0,-80.1744	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:213:0,213:0:0:213:7634:-687.087,-64.1194,0	0/1:262:138,124:138:4822:124:4423:-319.371,0,-355.269	1/1:118:0,118:0:0:118:4212:-379.259,-35.5215,0	1/1:203:1,202:1:36:202:7248:-648.772,-57.5108,0	1/1:115:0,115:0:0:115:4114:-370.444,-34.6185,0	0/1:21:8,13:8:286:13:464:-35.7759,0,-19.7639	0/1:158:70,88:70:2492:88:3160:-237.016,0,-176.968	1/1:90:0,90:0:0:90:3227:-290.651,-27.0927,0	0/1:27:17,10:17:605:10:360:-24.6165,0,-46.6532	0/1:163:81,82:81:2895:82:2934:-215.219,0,-211.719	0/1:28:16,12:16:561:12:428:-30.43,0,-42.3894	0/1:30:17,13:17:572:13:468:-33.4287,0,-42.7611	1/1:34:0,31:0:0:31:1112:-100.032,-9.33193,0	1/1:94:0,94:0:0:94:3380:-304.414,-28.2968,0	1/1:127:0,126:0:0:126:4503:-405.079,-37.9298,0	0/1:24:14,10:14:485:10:360:-25.5196,0,-36.753	1/1:277:0,277:0:0:277:9900:-890.935,-83.3853,0	1/1:256:2,253:2:72:253:9056:-808.214,-70.2125,0	0/1:98:46,52:46:1608:52:1864:-138.538,0,-115.506	1/1:98:0,98:0:0:98:3501:-315.299,-29.5009,0	0/1:164:87,77:87:3094:77:2740:-197.473,0,-229.32	0/1:176:118,57:118:4180:57:2041:-131.068,0,-323.492	0/1:32:16,16:16:565:16:576:-42.542,0,-41.5466	1/1:72:0,72:0:0:72:2592:-233.528,-21.6742,0	1/1:91:0,90:0:0:90:3224:-290.131,-27.0927,0	0/1:35:19,16:19:674:16:552:-39.4668,0,-50.4517	1/1:162:0,162:0:0:162:5812:-523.192,-48.7669,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	1/1:119:0,119:0:0:119:4268:-384.296,-35.8226,0	1/1:187:1,186:1:25:186:6684:-599.121,-53.7927,0	0/1:172:79,92:79:2770:92:3299:-245.292,0,-197.703	1/1:126:1,125:1:36:125:4463:-398.236,-34.3315,0	1/1:30:1,29:1:36:29:1040:-90.3161,-5.43263,0	1/1:163:0,163:0:0:163:5842:-525.89,-49.0679,0	1/1:164:0,164:0:0:164:5856:-527.133,-49.3689,0	1/1:208:1,205:1:36:205:7347:-657.715,-58.7554,0	1/1:108:0,108:0:0:108:3876:-349.034,-32.5112,0	0/1:60:29,31:29:1002:31:1116:-82.6899,0,-72.424	0/1:87:41,46:41:1433:46:1648:-122.419,0,-103.072	0/1:138:71,67:71:2524:67:2408:-175.434,0,-185.869	1/1:57:0,57:0:0:57:2037:-183.601,-17.1587,0	1/1:85:0,85:0:0:85:3031:-273.019,-25.5876,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	0/1:62:32,29:32:1145:29:1044:-75.5521,0,-84.637	0/1:133:56,77:56:1995:77:2764:-208.964,0,-139.785	0/1:59:37,22:37:1324:22:792:-53.8449,0,-101.702	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:73:0,73:0:0:73:2609:-235.057,-21.9752,0
chr07	23243170	.	AAG	GAG,GAA	215535	PASS	AB=0.48975,0.506646;ABP=7.0612,4.71314;AC=140,48;AF=0.744681,0.255319;AN=188;AO=7345,2260;CIGAR=1X2M,1X1M1X;DP=9642;DPB=9643;DPRA=103.667,0.804717;EPP=14419.1,4594.42;EPPR=9.52472;GTI=1;LEN=1,3;MEANALT=1.95699,2.28571;MQM=59.9853,59.9717;MQMR=60;NS=94;NUMALT=2;ODDS=0.527186;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=262033,79741;QR=108;RO=3;RPL=7164,2223;RPP=14419.1,4594.42;RPPR=9.52472;RPR=181,37;RUN=1,1;SAF=0,0;SAP=15952.5,4910.54;SAR=7345,2260;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,31,12:0:0:31,12:1103,417:-124.148,-34.2494,-24.9174,-90.2479,0,-86.6355	1/2:76:0,45,30:0:0:45,30:1590,1056:-215.558,-86.066,-72.5196,-129.59,0,-120.559	1/2:123:0,67,56:0:0:67,56:2408,1994:-359.326,-162.876,-142.707,-196.807,0,-179.949	1/2:155:0,81,72:0:0:81,72:2887,2555:-443.543,-208.215,-183.831,-235.372,0,-213.698	1/1:86:0,85,1:0:0:85,1:3024,33:-272.062,-25.5876,0,-269.394,-22.5894,-269.093	1/1:61:0,61,0:0:0:61,0:2175,0:-196.016,-18.3628,0,-196.016,-18.3628,-196.016	1/2:133:0,54,78:0:0:54,78:1908,2738:-378.272,-222.882,-206.627,-155.441,0,-131.961	1/1:136:0,135,0:0:0:135,0:4803,0:-432.066,-40.6391,0,-432.066,-40.6391,-432.066	1/1:97:0,95,1:0:0:95,1:3370,36:-303.158,-28.5979,0,-300.22,-25.6604,-299.919	1/2:152:0,70,81:0:0:70,81:2503,2871:-438.056,-233.962,-212.89,-204.169,0,-179.785	1/1:94:0,94,0:0:0:94,0:3363,0:-302.886,-28.2968,0,-302.886,-28.2968,-302.886	1/2:96:0,45,50:0:0:45,50:1597,1754:-272.96,-142.84,-129.293,-130.22,0,-115.168	1/2:108:0,54,54:0:0:54,54:1935,1919:-314.545,-156.732,-140.476,-158.17,0,-141.914	1/2:97:0,45,52:0:0:45,52:1603,1810:-278.184,-147.523,-133.977,-131.013,0,-115.36	1/2:108:0,55,52:0:0:55,52:1976,1837:-310.906,-149.703,-133.146,-161.306,0,-145.652	1/1:74:0,74,0:0:0:74,0:2627,0:-236.678,-22.2762,0,-236.678,-22.2762,-236.678	1/1:102:0,101,0:0:0:101,0:3607,0:-324.476,-30.404,0,-324.476,-30.404,-324.476	1/1:80:0,80,0:0:0:80,0:2840,0:-255.837,-24.0824,0,-255.837,-24.0824,-255.837	1/2:53:0,28,25:0:0:28,25:1004,876:-153.523,-71.6296,-63.2008,-82.247,0,-74.7213	1/2:136:0,72,64:0:0:72,64:2534,2256:-390.319,-184.034,-162.36,-206.636,0,-187.37	1/1:138:0,138,0:0:0:138,0:4911,0:-442.141,-41.5421,0,-442.141,-41.5421,-442.141	1/1:148:0,148,0:0:0:148,0:5299,0:-477.044,-44.5524,0,-477.044,-44.5524,-477.044	1/1:45:0,45,0:0:0:45,0:1612,0:-145.37,-13.5464,0,-145.37,-13.5464,-145.37	1/1:159:0,158,0:0:0:158,0:5666,0:-509.697,-47.5627,0,-509.697,-47.5627,-509.697	1/2:83:0,56,27:0:0:56,27:1996,957:-241.019,-78.3175,-61.4598,-163.056,0,-154.929	1/2:422:0,199,221:0:0:199,221:7106,7805:-1214.98,-635.643,-575.738,-579.377,0,-512.849	1/1:178:0,176,0:0:0:176,0:6261,0:-563.278,-52.9813,0,-563.278,-52.9813,-563.278	1/2:41:0,23,18:0:0:23,18:828,635:-119.623,-52.0588,-45.1351,-67.9204,0,-62.5019	1/1:232:0,232,0:0:0:232,0:8255,0:-742.963,-69.839,0,-742.963,-69.839,-742.963	1/2:128:0,65,63:0:0:65,63:2325,2239:-372.394,-182.808,-163.241,-189.942,0,-170.977	1/1:100:0,98,1:0:0:98,1:3507,36:-315.48,-29.5009,0,-312.542,-26.5635,-312.241	1/2:14:0,7,7:0:0:7,7:252,229:-39.4001,-18.8217,-16.7145,-20.9217,0,-18.8145	1/1:21:0,20,1:0:0:20,1:712,36:-64.047,-6.0206,0,-61.1094,-2.72336,-60.8084	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/2:26:0,14,12:0:0:14,12:504,416:-75.2897,-34.1587,-29.9443,-41.4837,0,-37.8713	1/1:284:0,283,0:0:0:283,0:10084,0:-907.228,-85.1915,0,-907.228,-85.1915,-907.228	1/2:178:0,88,90:0:0:88,90:3147,3160:-514.139,-257.529,-231.039,-256.964,0,-229.872	1/2:116:1,57,58:1:36:57,58:2026,2047:-328.541,-163.743,-149.522,-162.155,0,-147.633	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:118:0,59,59:0:0:59,59:2116,2091:-343.288,-170.697,-152.936,-172.947,0,-155.187	1/2:76:0,32,44:0:0:32,44:1144,1566:-221.266,-127.986,-118.353,-93.6366,0,-80.3912	1/2:144:0,71,72:0:0:71,72:2513,2548:-412.232,-207.537,-186.164,-204.689,0,-183.015	1/2:89:0,50,39:0:0:50,39:1787,1347:-255.488,-109.778,-94.7261,-146.06,0,-134.32	1/2:84:1,33,49:1:36:33,49:1175,1714:-232.018,-136.548,-129.552,-92.8782,0,-81.0653	1/1:118:0,117,0:0:0:117,0:4183,0:-376.291,-35.2205,0,-376.291,-35.2205,-376.291	1/1:88:0,87,0:0:0:87,0:3120,0:-280.775,-26.1896,0,-280.775,-26.1896,-280.775	1/2:193:0,91,102:0:0:91,102:3259,3581:-557.575,-291.794,-264.4,-266.136,0,-235.431	1/1:113:0,113,0:0:0:113,0:4047,0:-364.417,-34.0164,0,-364.417,-34.0164,-364.417	1/1:75:0,74,0:0:0:74,0:2619,0:-235.596,-22.2762,0,-235.596,-22.2762,-235.596	1/1:182:0,182,0:0:0:182,0:6503,0:-585.351,-54.7875,0,-585.351,-54.7875,-585.351	1/2:14:0,3,11:0:0:3,11:108,391:-41.0315,-32.2182,-31.3151,-9.17208,0,-5.86075	1/2:91:0,49,42:0:0:49,42:1760,1487:-265.059,-121.482,-106.731,-143.933,0,-131.29	1/1:60:0,59,0:0:0:59,0:2108,0:-189.398,-17.7608,0,-189.398,-17.7608,-189.398	1/2:18:0,8,10:0:0:8,10:288,360:-53.2333,-29.734,-27.3258,-23.8592,0,-20.8489	1/2:95:0,40,55:0:0:40,55:1440,1934:-275.28,-157.78,-145.738,-117.857,0,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chr07	23278957	.	T	A	22202.7	PASS	AB=0.45255;ABP=30.6243;AC=95;AF=0.510753;AN=186;AO=1149;CIGAR=1X;DP=2194;DPB=2194;DPRA=0.938353;EPP=2277.31;EPPR=2166.99;GTI=12;LEN=1;MEANALT=1.01176;MQM=59.9495;MQMR=59.954;NS=93;NUMALT=1;ODDS=0.110359;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41035;QR=37399;RO=1044;RPL=14;RPP=2377.91;RPPR=2192.53;RPR=1135;RUN=1;SAF=16;SAP=2360.99;SAR=1133;SRF=3;SRP=2244.04;SRR=1041;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:4,4:4:144:4:144:-10.903,0,-10.9054	0/1:24:14,10:14:500:10:351:-24.702,0,-38.1115	0/0:16:15,1:15:536:1:32:0,-1.61717,-45.3755	0/1:35:22,13:22:788:13:468:-31.9236,0,-60.7087	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:46:37,9:37:1324:9:313:-14.6526,0,-105.615	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	0/1:45:23,22:23:820:22:792:-58.0593,0,-59.636	0/1:30:12,18:12:432:18:609:-46.0946,0,-30.1903	0/1:26:15,11:15:536:11:392:-27.7933,0,-40.748	0/1:58:37,21:37:1328:21:756:-50.9075,0,-102.362	1/1:31:1,30:1:36:30:1080:-93.9201,-5.73876,0	0/1:17:2,15:2:72:15:531:-43.0044,0,-1.71921	0/1:23:4,19:4:144:19:684:-54.9666,0,-6.38993	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:32:9,23:9:324:23:828:-65.2112,0,-19.8729	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:20:13,7:13:468:7:243:-16.1869,0,-36.439	0/1:23:11,12:11:392:12:432:-32.2975,0,-28.6964	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0491	0/1:18:4,14:4:144:14:496:-39.5557,0,-7.89508	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:17:15,2:15:540:2:72:-1.71921,0,-43.819	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7843	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	1/1:114:0,114:0:0:114:4077:-367.115,-34.3174,0	0/1:5:4,1:4:136:1:32:-1.69416,0,-11.0704	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:9:2,6:2:72:6:216:-17.0224,0,-4.06865	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	0/1:30:15,15:15:540:15:525:-38.5472,0,-39.9056	0/1:37:24,13:24:856:13:468:-31.3215,0,-66.223	.:.:.:.:.:.:.:.	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:23:5,18:5:180:18:648:-51.7282,0,-9.62837	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/0:26:24,2:24:864:2:72:0,-0.990057,-71.2458	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:48:2,46:2:72:46:1655:-142.402,-7.61272,0	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	1/1:39:1,38:1:36:38:1358:-118.922,-8.1419,0	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/0:19:18,1:18:640:1:36:0,-2.12129,-54.331	0/1:20:17,3:17:604:3:108:-4.05457,0,-48.67	0/1:29:25,4:25:892:4:144:-4.58375,0,-71.8698	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:16:4,12:4:144:12:418:-32.7615,0,-8.49714	0/1:29:24,5:24:852:5:180:-7.82219,0,-68.2705	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:44:3,41:3:108:41:1455:-121.17,-3.17015,0	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:29:10,19:10:356:19:679:-52.7091,0,-23.6514	0/1:32:28,4:28:996:4:144:-3.68066,0,-80.3219	0/1:18:11,7:11:392:7:237:-16.2405,0,-30.2015	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:23:3,20:3:108:20:716:-57.844,0,-3.15148	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:48:30,18:30:1067:18:648:-44.2024,0,-81.8918	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	0/1:76:47,29:47:1684:29:1035:-70.5848,0,-128.969	1/1:13:1,12:1:36:12:423:-34.8068,-0.315115,0	1/1:48:3,45:3:108:45:1585:-132.864,-4.37427,0	0/1:43:5,38:5:180:38:1368:-110.477,0,-3.60777	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/1:36:26,10:26:932:10:360:-21.9072,0,-73.3618	0/1:43:29,14:29:1044:14:489:-31.3946,0,-81.3305	1/1:41:1,40:1:36:40:1418:-124.319,-8.74396,0	1/1:80:3,77:3:108:77:2750:-237.666,-14.0072,0
chr07	23278984	.	C	A	21550.3	PASS	AB=0.450855;ABP=32.4644;AC=94;AF=0.505376;AN=186;AO=1140;CIGAR=1X;DP=2203;DPB=2203;DPRA=0.912393;EPP=2358.38;EPPR=2276.67;GTI=13;LEN=1;MEANALT=1;MQM=59.9825;MQMR=59.9548;NS=93;NUMALT=1;ODDS=0.118974;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40834;QR=37930;RO=1063;RPL=1140;RPP=2478.49;RPPR=2311.29;RPR=0;RUN=1;SAF=14;SAP=2358.38;SAR=1126;SRF=4;SRP=2276.67;SRR=1059;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:25:15,10:15:540:10:356:-24.8555,0,-41.4108	0/0:16:15,1:15:540:1:32:0,-1.61717,-45.7372	0/1:35:22,13:22:784:13:468:-31.9236,0,-60.3479	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:45:36,9:36:1292:9:320:-15.5673,0,-103.037	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	0/1:44:23,21:23:820:21:756:-55.1219,0,-60.2474	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/1:25:14,11:14:504:11:392:-28.0943,0,-38.1723	0/1:59:37,22:37:1302:22:792:-53.8449,0,-99.7165	1/1:31:1,30:1:36:30:1080:-93.9201,-5.73876,0	0/1:17:2,15:2:72:15:540:-43.819,0,-1.71921	0/1:24:4,20:4:144:20:712:-57.1819,0,-6.0889	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:31:8,23:8:288:23:824:-65.1514,0,-16.9355	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:21:13,8:13:468:8:284:-19.5771,0,-36.138	0/1:23:11,12:11:392:12:432:-32.2975,0,-28.6964	0/1:25:15,10:15:540:10:360:-25.2186,0,-41.4108	0/1:18:4,14:4:144:14:500:-39.9176,0,-7.89508	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:17:15,2:15:540:2:72:-1.71921,0,-43.819	0/0:84:84,0:84:2975:0:0:0,-25.2865,-267.979	0/0:31:31,0:31:1089:0:0:0,-9.33193,-98.3091	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	1/1:115:0,115:0:0:115:4132:-372.062,-34.6185,0	0/1:5:4,1:4:129:1:36:-2.09312,0,-10.4225	0/1:28:13,15:13:468:15:536:-40.146,0,-34.0308	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:17:9,8:9:309:8:288:-21.1499,0,-23.0232	0/1:31:16,15:16:572:15:540:-39.6046,0,-42.4815	0/1:38:25,13:25:881:13:464:-30.6584,0,-68.1667	.:.:.:.:.:.:.:.	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	0/1:23:5,18:5:180:18:648:-51.7282,0,-9.62837	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:13:12,1:12:417:1:36:0,-0.315115,-34.2619	0/0:28:26,2:26:936:2:72:0,-1.59212,-77.7227	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/1:10:7,3:7:237:3:108:-7.06487,0,-18.6488	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:47:2,45:2:72:45:1612:-138.533,-7.31169,0	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	1/1:39:1,38:1:36:38:1364:-119.462,-8.1419,0	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	0/0:19:18,1:18:633:1:32:0,-2.52026,-54.0957	0/1:20:17,3:17:608:3:108:-4.05457,0,-49.0314	0/1:31:27,4:27:968:4:144:-3.98169,0,-78.1054	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:15:4,11:4:144:11:392:-31.1046,0,-8.79817	0/1:29:24,5:24:860:5:180:-7.82219,0,-68.992	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:41:3,38:3:108:38:1356:-112.265,-2.26706,0	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:23:14,9:14:500:9:324:-22.5822,0,-38.4125	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/1:29:10,19:10:360:19:684:-53.1605,0,-24.0144	0/1:33:29,4:29:1028:4:144:-3.37963,0,-82.899	0/1:19:12,7:12:424:7:252:-17.3094,0,-32.7768	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:23:3,20:3:108:20:716:-57.844,0,-3.15148	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:48:30,18:30:1061:18:648:-44.2024,0,-81.3499	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/1:76:47,29:47:1688:29:1033:-70.4054,0,-129.329	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:48:3,45:3:108:45:1616:-135.654,-4.37427,0	0/1:43:5,38:5:180:38:1349:-108.764,0,-3.60777	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/1:36:26,10:26:936:10:360:-21.9072,0,-73.7224	0/1:44:30,14:30:1080:14:496:-31.7289,0,-84.2679	1/1:41:1,40:1:36:40:1402:-122.875,-8.74396,0	1/1:81:3,78:3:108:78:2789:-241.174,-14.3083,0
chr07	23278986	.	G	A	8406.5	PASS	AB=0.404026;ABP=114.299;AC=63;AF=0.33871;AN=186;AO=577;CIGAR=1X;DP=2203;DPB=2203;DPRA=1.1468;EPP=1221.45;EPPR=3408.93;GTI=10;LEN=1;MEANALT=1.01351;MQM=59.9168;MQMR=59.9852;NS=93;NUMALT=1;ODDS=0.372898;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20674;QR=58253;RO=1624;RPL=577;RPP=1255.95;RPPR=3529.48;RPR=0;RUN=1;SAF=4;SAP=1221.45;SAR=573;SRF=14;SRP=3408.93;SRR=1610;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6183	0/1:25:12,13:12:432:13:464:-34.5718,0,-31.6954	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:35:25,10:25:896:10:360:-22.2083,0,-70.4243	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:45:12,33:12:428:33:1184:-93.322,0,-25.2839	0/0:24:22,2:22:788:2:72:0,-0.387997,-64.4081	0/1:44:23,21:23:816:21:752:-53.8204,0,-60.5164	0/1:29:20,9:20:720:9:324:-20.776,0,-56.3989	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:58:27,29:27:968:29:1034:-76.1562,0,-70.22	0/0:31:30,1:30:1080:1:35:0,-5.83736,-94.0187	0/0:17:16,1:16:576:1:36:0,-1.51923,-48.5767	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:31:28,3:28:1008:3:108:-0.74324,0,-81.7044	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:16:13,3:13:464:3:108:-5.25869,0,-37.281	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9411	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:84:68,16:68:2444:16:576:-26.8885,0,-194.928	0/1:32:19,13:19:665:13:468:-32.8185,0,-50.5398	0/1:41:27,14:27:968:14:500:-32.9939,0,-75.0951	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:28:20,8:20:716:8:288:-17.8386,0,-56.3389	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	0/1:38:14,24:14:500:24:856:-65.922,0,-33.897	.:.:.:.:.:.:.:.	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:17:9,8:9:324:8:276:-20.0577,0,-24.3883	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:23:22,1:22:788:1:36:0,-3.32541,-67.6465	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:27:22,5:22:788:5:180:-8.42425,0,-63.117	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:14:11,3:11:392:3:104:-5.48839,0,-31.4056	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:11:9,2:9:320:2:68:-3.14638,0,-25.831	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	0/1:20:4,16:4:140:16:564:-45.0697,0,-6.92398	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/1:31:21,10:21:756:10:360:-23.4124,0,-59.0353	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:29:24,5:24:860:5:169:-6.81166,0,-68.992	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:41:39,2:39:1396:2:68:0,-5.88452,-119.481	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/1:22:18,4:18:648:4:144:-6.69096,0,-52.0292	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:29:24,5:24:864:5:180:-7.82219,0,-69.3527	0/0:32:31,1:31:1108:1:36:0,-6.03468,-96.4327	0/1:19:11,8:11:388:8:288:-20.5478,0,-29.5378	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:24:23,1:23:820:1:36:0,-3.62644,-70.5242	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:48:27,21:27:972:21:752:-53.5568,0,-73.3485	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/1:75:36,39:36:1292:39:1400:-103.722,0,-94.0065	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:50:49,1:49:1764:1:36:0,-11.4532,-155.445	0/0:43:42,1:42:1512:1:36:0,-9.34601,-132.776	0/1:19:13,6:13:464:6:216:-14.0709,0,-36.3779	0/1:36:12,24:12:432:24:864:-67.2455,0,-28.3841	0/1:44:14,30:14:504:30:1080:-84.2679,0,-32.4528	0/0:42:41,1:41:1464:1:36:0,-9.04498,-128.458	0/0:82:79,3:79:2840:3:108:0,-14.6093,-245.762
chr07	23345302	.	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chr07	23409913	.	C	T	173479	PASS	AB=0.482241;ABP=16.5076;AC=138;AF=0.734043;AN=188;AO=8142;CIGAR=1X;DP=10719;DPB=10719;DPRA=22.0529;EPP=17683.1;EPPR=5590.21;GTI=2;LEN=1;MEANALT=1.03297;MQM=59.9576;MQMR=59.9347;NS=94;NUMALT=1;ODDS=2.64057;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=291911;QR=91882;RO=2573;RPL=0;RPP=17683.1;RPPR=5590.21;RPR=8142;RUN=1;SAF=0;SAP=17683.1;SAR=8142;SRF=0;SRP=5590.21;SRR=2573;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:7,25:7:252:25:885:-70.3336,0,-13.396	0/1:158:74,84:74:2631:84:3024:-224.827,0,-189.475	0/1:101:49,52:49:1748:52:1864:-137.635,0,-127.2	0/1:156:85,71:85:3052:71:2522:-180.272,0,-227.902	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:149:86,63:86:3092:63:2260:-158.809,0,-233.649	1/1:189:0,189:0:0:189:6792:-610.979,-56.8947,0	1/1:95:0,95:0:0:95:3389:-305.224,-28.5979,0	0/1:125:69,56:69:2460:56:2008:-143.365,0,-184.019	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:77:37,40:37:1319:40:1436:-106.358,0,-95.8319	0/1:95:48,47:48:1708:47:1684:-123.249,0,-125.408	0/1:90:41,49:41:1476:49:1764:-131.951,0,-106.043	0/1:79:42,37:42:1476:37:1324:-95.6807,0,-109.35	1/1:62:0,62:0:0:62:2232:-200.826,-18.6639,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:92:42,50:42:1508:50:1796:-134.228,0,-108.32	0/1:264:135,129:135:4830:129:4608:-335.411,0,-355.357	1/1:228:0,228:0:0:228:8168:-735.12,-68.6348,0	1/1:139:0,139:0:0:139:4992:-449.426,-41.8432,0	1/1:52:1,51:1:36:51:1832:-161.563,-12.0553,0	1/1:90:0,90:0:0:90:3224:-290.382,-27.0927,0	0/1:107:63,44:63:2241:44:1580:-110.281,0,-169.515	0/1:357:176,181:176:6287:181:6512:-478.692,0,-458.457	1/1:283:0,283:0:0:283:10152:-913.605,-85.1915,0	0/1:35:21,14:21:734:14:504:-35.162,0,-55.8444	1/1:253:0,252:0:0:252:9048:-813.973,-75.8596,0	0/1:144:46,98:46:1652:98:3520:-273.638,0,-105.62	1/1:117:0,117:0:0:117:4208:-378.882,-35.2205,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:261:1,259:1:36:259:9296:-833.02,-75.0094,0	0/1:209:116,93:116:4172:93:3333:-237.27,0,-312.74	0/1:73:39,34:39:1396:34:1220:-88.1316,0,-103.964	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:142:72,70:72:2537:70:2507:-182.818,0,-185.832	0/1:49:21,28:21:756:28:1000:-75.5649,0,-53.6168	0/1:134:63,71:63:2264:71:2550:-189.412,0,-163.684	0/1:134:66,68:66:2357:68:2437:-179.239,0,-172.049	0/1:72:42,30:42:1504:30:1076:-75.4787,0,-113.98	1/1:123:0,123:0:0:123:4409:-396.98,-37.0267,0	1/1:150:2,148:2:72:148:5312:-471.376,-38.3178,0	0/1:189:95,94:95:3390:94:3376:-247.16,0,-248.42	1/1:149:0,149:0:0:149:5343:-481.001,-44.8535,0	1/1:129:0,129:0:0:129:4616:-415.604,-38.8329,0	1/1:220:0,220:0:0:220:7896:-710.593,-66.2266,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:163:78,85:78:2787:85:3060:-226.555,0,-202.002	1/1:58:0,58:0:0:58:2073:-186.839,-17.4597,0	0/1:30:13,17:13:464:17:597:-45.0252,0,-33.0666	0/1:132:74,58:74:2630:58:2067:-146.564,0,-197.203	0/1:80:33,47:33:1184:47:1670:-126.503,0,-82.7859	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:92:0,92:0:0:92:3304:-297.57,-27.6948,0	1/1:148:0,148:0:0:148:5288:-476.057,-44.5524,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:247:0,247:0:0:247:8844:-795.942,-74.3544,0	1/1:226:2,224:2:68:224:8031:-716.35,-61.5751,0	0/1:66:31,35:31:1112:35:1252:-93.1167,0,-80.5234	1/1:93:0,93:0:0:93:3293:-296.58,-27.9958,0	0/1:450:246,202:246:8798:202:7264:-518.631,0,-656.585	0/1:178:120,58:120:4295:58:2084:-134.247,0,-333.125	0/1:28:16,12:16:572:12:423:-29.9762,0,-43.3846	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:111:1,110:1:36:110:3956:-352.631,-29.8161,0	0/1:23:17,6:17:603:6:216:-12.8668,0,-47.6758	1/1:117:0,117:0:0:117:4151:-373.774,-35.2205,0	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	1/1:200:0,200:0:0:200:7184:-646.287,-60.206,0	1/1:199:0,199:0:0:199:7131:-641.419,-59.905,0	0/1:86:38,48:38:1364:48:1724:-129.546,0,-97.1721	1/1:106:0,106:0:0:106:3801:-342.277,-31.9092,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:134:0,134:0:0:134:4812:-433.234,-40.338,0	1/1:115:0,115:0:0:115:4132:-371.966,-34.6185,0	1/1:268:0,268:0:0:268:9601:-864.041,-80.676,0	1/1:138:0,138:0:0:138:4943:-445.019,-41.5421,0	0/1:72:34,38:34:1208:38:1368:-101.747,0,-87.3519	0/1:100:63,37:63:2216:37:1328:-89.7192,0,-169.6	0/1:180:90,90:90:3206:90:3228:-236.556,0,-234.448	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:40:24,16:24:855:16:572:-39.7722,0,-65.229	0/1:103:47,56:47:1680:56:2012:-150.329,0,-120.481	0/1:108:77,31:77:2746:31:1116:-68.2405,0,-214.87	1/1:119:0,119:0:0:119:4280:-385.321,-35.8226,0	1/1:132:0,132:0:0:132:4727:-425.588,-39.736,0
chr07	23508346	.	G	C	357935	PASS	AB=0.490959;ABP=8.97862;AC=141;AF=0.758065;AN=186;AO=13317;CIGAR=1X;DP=17648;DPB=17648;DPRA=0;EPP=28920.5;EPPR=9366.4;GTI=0;LEN=1;MEANALT=1.2043;MQM=59.9893;MQMR=59.9891;NS=93;NUMALT=1;ODDS=3.5391;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=472701;QR=153254;RO=4312;RPL=6187;RPP=148.011;RPPR=218.403;RPR=7130;RUN=1;SAF=6187;SAP=148.011;SAR=7130;SRF=2483;SRP=218.403;SRR=1829;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:36,21:36:1280:21:729:-48.77,0,-98.3445	0/1:246:151,94:151:5390:94:3343:-226.976,0,-411.119	0/1:292:130,161:130:4613:161:5706:-425.7,0,-327.374	0/1:286:169,117:169:6020:117:4174:-289.748,0,-455.805	1/1:28:0,28:0:0:28:989:-89.322,-8.42884,0	1/1:51:0,51:0:0:51:1791:-161.469,-15.3525,0	0/1:270:144,126:144:5108:126:4473:-321.462,0,-378.588	1/1:160:1,158:1:36:158:5621:-502.415,-44.6253,0	1/1:153:2,150:2:72:150:5344:-474.257,-39.2797,0	0/1:217:98,119:98:3507:119:4251:-317.446,0,-250.516	1/1:286:0,285:0:0:285:10029:-902.197,-85.7936,0	0/1:191:93,98:93:3310:98:3473:-255.287,0,-240.622	0/1:232:98,134:98:3431:134:4783:-360.789,0,-239.156	0/1:269:107,162:107:3823:162:5722:-434.123,0,-263.29	0/1:187:95,92:95:3388:92:3259:-237.239,0,-248.844	1/1:187:1,186:1:36:186:6583:-588.957,-52.6943,0	1/1:366:1,364:1:36:364:13014:-1167.47,-106.638,0	1/1:62:0,62:0:0:62:2191:-197.369,-18.6639,0	0/1:103:35,68:35:1256:68:2423:-187.32,0,-82.3392	0/1:369:215,153:215:7647:153:5453:-379.76,0,-577.128	1/1:243:0,243:0:0:243:8654:-778.787,-73.1503,0	1/1:81:0,81:0:0:81:2865:-258.088,-24.3834,0	1/1:61:1,60:1:36:60:2116:-187.108,-14.7646,0	1/1:155:1,154:1:36:154:5480:-489.729,-43.0614,0	0/1:179:117,62:117:4191:62:2202:-144.56,0,-323.486	0/1:369:216,153:216:7656:153:5406:-375.593,0,-577.998	1/1:432:0,431:0:0:431:15309:-1377.17,-129.744,0	0/1:120:40,80:40:1428:80:2855:-221.064,0,-92.6939	1/1:475:1,474:1:36:474:16854:-1512.92,-139.391,0	0/1:206:86,120:86:3057:120:4239:-319.677,0,-213.346	1/1:141:4,137:4:144:137:4860:-424.24,-29.1316,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:21:16,5:16:572:5:180:-10.2304,0,-45.4918	1/1:524:1,522:1:36:522:18580:-1668.19,-154.2,0	0/1:129:71,57:71:2510:57:2023:-143.446,0,-187.261	0/1:194:91,103:91:3222:103:3671:-272.194,0,-231.804	.:.:.:.:.:.:.:.	0/1:208:103,104:103:3656:104:3677:-268.46,0,-266.571	0/1:170:65,105:65:2320:105:3751:-286.615,0,-157.885	0/1:167:83,84:83:2966:84:2942:-214.74,0,-216.9	0/1:341:153,188:153:5442:188:6593:-490.805,0,-387.261	0/1:183:76,107:76:2711:107:3827:-289.538,0,-189.145	1/1:150:0,149:0:0:149:5252:-472.462,-44.8535,0	1/1:145:0,145:0:0:145:5125:-461.395,-43.6494,0	0/1:219:138,81:138:4915:81:2868:-192.431,0,-376.533	1/1:176:0,176:0:0:176:6218:-559.72,-52.9813,0	1/1:360:0,360:0:0:360:12819:-1153.53,-108.371,0	1/1:183:0,183:0:0:183:6507:-585.717,-55.0885,0	0/1:27:14,13:14:500:13:468:-34.3318,0,-37.2084	0/1:174:101,73:101:3616:73:2592:-181.148,0,-273.266	1/1:146:0,146:0:0:146:5183:-466.611,-43.9504,0	0/1:22:11,11:11:379:11:385:-28.3609,0,-27.8179	0/1:196:96,100:96:3432:100:3556:-261.246,0,-250.092	0/1:42:30,12:30:1072:12:413:-24.8546,0,-84.1492	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:156:0,156:0:0:156:5573:-501.692,-46.9607,0	1/1:420:12,408:12:423:408:14483:-1264.82,-88.0275,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:398:1,396:1:36:396:14098:-1264.99,-116.27,0	1/1:280:10,269:10:360:269:9565:-828.062,-51.6029,0	0/1:137:57,80:57:2035:80:2842:-214.777,0,-142.18	1/1:51:0,51:0:0:51:1816:-163.715,-15.3525,0	0/1:286:173,113:173:6186:113:4026:-276.434,0,-470.743	0/1:303:224,79:224:7958:79:2809:-161.838,0,-625.039	0/1:144:59,85:59:2116:85:3040:-230.482,0,-147.36	1/1:157:0,157:0:0:157:5549:-499.538,-47.2617,0	1/1:356:0,356:0:0:356:12631:-1136.62,-107.167,0	0/1:47:35,12:35:1260:12:416:-23.6227,0,-99.5571	1/1:192:0,192:0:0:192:6819:-613.782,-57.7978,0	1/1:252:0,251:0:0:251:8899:-800.54,-75.5585,0	1/1:142:0,142:0:0:142:5033:-453.12,-42.7463,0	1/1:260:0,260:0:0:260:9231:-830.763,-78.2678,0	0/1:51:20,31:20:703:31:1098:-83.7761,0,-48.241	1/1:160:1,158:1:36:158:5584:-499.088,-44.6253,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:155:0,155:0:0:155:5513:-496.298,-46.6597,0	1/1:145:0,144:0:0:144:5116:-460.225,-43.3483,0	1/1:239:0,239:0:0:239:8421:-757.89,-71.9462,0	1/1:205:0,205:0:0:205:7259:-653.367,-61.7112,0	0/1:266:141,125:141:4970:125:4419:-317.808,0,-367.38	0/1:259:125,134:125:4409:134:4752:-349.874,0,-319.018	0/1:401:178,223:178:6312:223:7875:-588.069,0,-447.464	1/1:87:0,87:0:0:87:3048:-274.549,-26.1896,0	1/1:187:0,187:0:0:187:6642:-597.864,-56.2926,0	1/1:229:0,229:0:0:229:8194:-737.472,-68.9359,0	0/1:216:83,132:83:2942:132:4705:-358.529,0,-199.933	0/1:330:124,206:124:4365:206:7315:-559.065,0,-293.685	0/1:255:165,90:165:5789:90:3207:-212.088,0,-444.367	1/1:206:0,205:0:0:205:7249:-652.107,-61.7112,0	1/1:325:2,323:2:72:323:11480:-1026.25,-90.998,0
chr07	23508415	.	T	C	16726.3	PASS	AB=0.446647;ABP=61.6327;AC=45;AF=0.241935;AN=186;AO=1065;CIGAR=1X;DP=5738;DPB=5738;DPRA=0.822767;EPP=2315.63;EPPR=10146;GTI=1;LEN=1;MEANALT=1.04167;MQM=59.7296;MQMR=59.9929;NS=93;NUMALT=1;ODDS=3.19947;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38207;QR=167496;RO=4671;RPL=0;RPP=2315.63;RPPR=10146;RPR=1065;RUN=1;SAF=1065;SAP=2315.63;SAR=0;SRF=4671;SRP=10146;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:29,9:29:1040:9:320:-17.7032,0,-82.4752	0/1:50:31,19:31:1112:19:684:-46.8296,0,-85.3398	0/1:88:51,37:51:1832:37:1328:-93.327,0,-138.67	0/1:149:79,70:79:2828:70:2520:-182.197,0,-209.905	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:78:36,42:36:1292:42:1504:-112.162,0,-93.1034	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:47:27,20:27:972:20:720:-50.9804,0,-73.6495	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:62:38,24:38:1368:24:860:-59.058,0,-104.757	0/1:57:31,26:31:1112:26:932:-67.0402,0,-83.2326	0/1:45:15,30:15:540:30:1072:-83.2406,0,-35.3902	0/1:51:27,24:27:972:24:864:-62.7296,0,-72.4454	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.646	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:28:27,1:27:972:1:36:0,-4.83056,-84.1996	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:101:60,41:60:2137:41:1476:-102.728,0,-162.192	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/1:57:35,22:35:1241:22:792:-54.447,0,-94.8338	0/1:172:102,69:102:3668:69:2480:-171.61,0,-278.486	0/0:156:156,0:156:5588:0:0:0,-46.9607,-503.042	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:141:141,0:141:5056:0:0:0,-42.4452,-455.179	0/1:77:50,27:50:1788:27:972:-64.6182,0,-138.023	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:132:132,0:132:4744:0:0:0,-39.736,-427.116	0/1:56:35,21:35:1260:21:756:-51.508,0,-96.8478	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	.:.:.:.:.:.:.:.	0/1:74:48,26:48:1712:26:932:-61.9226,0,-132.089	0/1:25:13,12:13:468:12:428:-31.3327,0,-34.9339	0/1:94:69,25:69:2484:25:896:-52.3452,0,-195.516	0/1:33:12,21:12:432:21:747:-57.6166,0,-29.2872	0/1:27:19,8:19:684:8:288:-18.1396,0,-53.7625	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:92:33,59:33:1180:59:2116:-162.796,0,-78.8133	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/0:137:137,0:137:4904:0:0:0,-41.2411,-441.512	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/1:10:6,4:6:208:4:144:-10.3033,0,-16.0488	0/1:75:53,22:53:1892:22:784:-48.3067,0,-147.981	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.361	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:72:41,31:41:1476:31:1108:-78.3344,0,-111.456	0/1:19:8,11:8:288:11:392:-29.7598,0,-20.5478	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:133:133,0:133:4764:0:0:0,-40.037,-428.895	0/0:165:161,4:161:5784:4:144:0,-36.3647,-507.367	0/1:48:32,16:32:1133:16:572:-37.364,0,-87.8272	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:82:45,37:45:1616:37:1328:-95.1358,0,-121.046	0/1:114:46,68:46:1633:68:2448:-185.932,0,-112.939	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/0:118:117,1:117:4192:1:32:0,-32.3222,-374.262	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:114:114,0:114:4069:0:0:0,-34.3174,-366.396	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/1:56:27,29:27:968:29:1040:-77.0026,0,-70.5797	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:146:146,0:146:5236:0:0:0,-43.9504,-471.376	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:43:28,15:28:1004:15:540:-35.9922,0,-77.7316	0/1:30:13,16:13:468:16:572:-42.7215,0,-33.3699	0/1:70:39,31:39:1400:31:1108:-78.9589,0,-105.227	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:34:20,14:20:720:14:500:-35.1012,0,-54.8938	0/1:70:36,34:36:1292:34:1224:-89.3485,0,-95.5093	0/1:31:14,17:14:504:17:604:-45.3581,0,-36.3662	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738
chr07	23508424	.	A	G	16475.4	PASS	AB=0.442445;ABP=71.7494;AC=45;AF=0.241935;AN=186;AO=1066;CIGAR=1X;DP=5798;DPB=5798;DPRA=0.922931;EPP=2317.8;EPPR=10267.6;GTI=1;LEN=1;MEANALT=1.01961;MQM=59.6679;MQMR=59.9915;NS=93;NUMALT=1;ODDS=1.46338;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38085;QR=169426;RO=4731;RPL=0;RPP=2317.8;RPPR=10267.6;RPR=1066;RUN=1;SAF=1066;SAP=2317.8;SAR=0;SRF=4731;SRP=10276.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:30,10:30:1080:10:348:-19.6114,0,-85.4721	0/1:51:32,19:32:1137:19:673:-45.5385,0,-87.2844	0/1:87:51,36:51:1828:36:1292:-90.3895,0,-138.611	0/1:149:80,69:80:2849:69:2475:-178.149,0,-211.794	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/1:76:34,42:34:1220:42:1508:-113.116,0,-87.2285	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/1:50:30,20:30:1065:20:720:-49.9908,0,-81.1083	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:62:37,25:37:1328:25:881:-60.942,0,-101.158	0/1:57:31,26:31:1116:26:936:-67.4008,0,-83.593	0/1:47:16,31:16:576:31:1116:-86.5895,0,-38.0266	0/1:51:27,24:27:972:24:860:-62.3689,0,-72.4454	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5607	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:101:61,40:61:2173:40:1427:-98.3199,0,-165.431	0/0:101:101,0:101:3590:0:0:0,-30.404,-323.305	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/0:79:79,0:79:2810:0:0:0,-23.7814,-253.137	0/0:56:55,1:55:1972:1:36:0,-13.2594,-174.157	0/1:58:35,23:35:1260:23:809:-55.6686,0,-96.2457	0/1:177:106,71:106:3789:71:2556:-176.996,0,-287.925	0/0:159:159,0:159:5696:0:0:0,-47.8638,-512.758	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:140:139,1:139:4965:1:21:0,-40.0443,-444.894	0/1:78:52,26:52:1845:26:936:-61.0787,0,-142.848	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:5,4:5:180:4:125:-8.84935,0,-13.8428	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:132:132,0:132:4744:0:0:0,-39.736,-427.116	0/1:56:33,23:33:1188:23:828:-57.9849,0,-90.3709	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	.:.:.:.:.:.:.:.	0/1:74:47,27:47:1669:27:957:-64.1676,0,-128.219	0/1:25:13,12:13:468:12:432:-31.695,0,-34.9339	0/1:95:70,25:70:2516:25:877:-50.292,0,-198.094	0/1:32:12,20:12:432:20:720:-55.4954,0,-29.5882	0/1:30:22,8:22:792:8:288:-17.2365,0,-62.5748	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:93:34,59:34:1216:59:2090:-160.124,0,-81.7508	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:138:138,0:138:4945:0:0:0,-41.5421,-445.197	0/0:98:97,1:97:3445:1:36:0,-25.9027,-306.662	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:73:52,21:52:1868:21:752:-46.0311,0,-146.424	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:71:41,30:41:1468:30:1080:-76.1177,0,-111.037	0/1:20:9,11:9:305:11:388:-29.096,0,-21.7566	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:95:94,1:94:3376:1:36:0,-24.9996,-300.457	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:135:135,0:135:4837:0:0:0,-40.639,-435.46	0/0:168:164,4:164:5865:4:144:0,-37.2678,-514.655	0/1:49:32,17:32:1148:17:608:-40.3016,0,-88.8794	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:82:46,36:46:1637:36:1292:-91.8974,0,-122.932	0/1:116:49,67:49:1760:67:2393:-180.683,0,-123.758	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/0:121:121,0:121:4321:0:0:0,-36.4246,-389.065	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:118:117,1:117:4193:1:36:0,-31.9233,-373.951	0/0:104:104,0:104:3717:0:0:0,-31.3071,-334.73	0/1:56:27,29:27:957:29:1029:-76.0094,0,-69.5862	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.157	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:149:149,0:149:5340:0:0:0,-44.8535,-480.732	0/0:57:57,0:57:2037:0:0:0,-17.1587,-183.6	0/1:43:28,15:28:1008:15:540:-35.9922,0,-78.0921	0/1:31:15,16:15:540:16:572:-42.4791,0,-39.6046	0/1:69:40,29:40:1440:29:1037:-72.873,0,-109.127	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:35:21,14:21:756:14:496:-34.4382,0,-57.8312	0/1:72:37,34:37:1332:34:1211:-87.5162,0,-98.4471	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976
chr07	23508448	.	G	A	16937.2	PASS	AB=0.448567;ABP=57.5132;AC=45;AF=0.241935;AN=186;AO=1074;CIGAR=1X;DP=5691;DPB=5691;DPRA=0.844337;EPP=2326.49;EPPR=10007;GTI=1;LEN=1;MEANALT=1;MQM=59.6639;MQMR=59.995;NS=93;NUMALT=1;ODDS=2.71489;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38559;QR=164892;RO=4615;RPL=1073;RPP=2326.49;RPPR=10007;RPR=1;RUN=1;SAF=1074;SAP=2335.17;SAR=0;SRF=4615;SRP=10024.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:30,10:30:1076:10:360:-20.6853,0,-85.1117	0/1:50:31,19:31:1103:19:680:-46.4684,0,-84.5283	0/1:87:50,37:50:1788:37:1332:-93.9882,0,-135.013	0/1:146:79,67:79:2836:67:2408:-173.026,0,-211.528	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:36:34,2:34:1216:2:72:0,-4.00036,-102.91	0/1:75:35,40:35:1228:40:1440:-107.306,0,-88.2438	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.978	0/0:73:73,0:73:2598:0:0:0,-21.9752,-234.068	0/1:50:29,21:29:1025:21:756:-53.2293,0,-77.5092	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:63:38,25:38:1341:25:900:-62.3561,0,-102.023	0/1:56:31,25:31:1095:25:883:-62.9298,0,-82.0014	0/1:46:15,31:15:532:31:1112:-86.5302,0,-34.3657	0/1:51:27,24:27:968:24:864:-62.7296,0,-72.0848	0/0:51:51,0:51:1783:0:0:0,-15.3525,-160.749	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:99:60,39:60:2135:39:1404:-96.8536,0,-162.616	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/0:52:51,1:51:1824:1:36:0,-12.0553,-160.843	0/1:57:34,23:34:1208:23:828:-57.6854,0,-91.8674	0/1:175:105,70:105:3764:70:2520:-174.359,0,-286.279	0/0:153:152,1:152:5428:1:36:0,-42.4593,-485.05	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:140:140,0:140:5017:0:0:0,-42.1442,-451.671	0/1:78:51,27:51:1832:27:968:-63.9566,0,-141.68	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/0:13:12,1:12:428:1:36:0,-0.315115,-35.2605	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:5,4:5:172:4:144:-10.6043,0,-13.1087	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:131:131,0:131:4684:0:0:0,-39.4349,-421.721	0/1:54:33,21:33:1184:21:752:-51.7491,0,-90.6127	0/1:21:9,12:9:320:12:432:-32.8996,0,-22.8207	.:.:.:.:.:.:.:.	0/1:75:48,27:48:1724:27:972:-65.2207,0,-132.868	0/1:24:12,12:12:428:12:432:-31.9961,0,-31.6341	0/1:96:68,28:68:2444:28:1004:-60.8953,0,-191.316	0/1:34:12,22:12:428:22:792:-61.3669,0,-28.6238	0/1:29:22,7:22:788:7:237:-12.9292,0,-62.5149	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/1:92:32,60:32:1136:60:2156:-166.365,0,-74.8541	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/0:134:134,0:134:4788:0:0:0,-40.338,-431.075	0/0:93:93,0:93:3321:0:0:0,-27.9958,-299.107	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:72:51,21:51:1832:21:752:-46.3321,0,-143.487	0/0:100:99,0:99:3534:0:0:0,-29.802,-317.909	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:72:41,31:41:1467:31:1115:-78.9651,0,-110.645	0/1:19:8,11:8:288:11:392:-29.7598,0,-20.5478	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:93:92,1:92:3295:1:36:0,-24.3975,-293.17	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:134:133,0:133:4772:0:0:0,-40.037,-429.425	0/0:162:158,4:158:5667:4:144:0,-35.4616,-496.842	0/1:49:32,17:32:1139:17:608:-40.3016,0,-88.0679	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:83:46,37:46:1625:37:1328:-94.8348,0,-121.551	0/1:116:47,69:47:1692:69:2480:-188.208,0,-117.641	0/1:25:14,11:14:496:11:396:-28.457,0,-37.4485	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:15:3,12:3:108:12:428:-34.3434,0,-5.55972	0/0:120:120,0:120:4281:0:0:0,-36.1236,-385.467	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:112:112,0:112:3963:0:0:0,-33.7154,-356.862	0/0:100:100,0:100:3570:0:0:0,-30.103,-321.507	0/1:56:27,29:27:963:29:1040:-77.0026,0,-70.1283	0/0:99:99,0:99:3533:0:0:0,-29.802,-318.178	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/0:142:142,0:142:5070:0:0:0,-42.7463,-456.445	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/1:42:27,15:27:963:15:540:-36.2933,0,-74.3427	0/1:30:14,16:14:500:16:576:-43.1417,0,-36.3053	0/1:70:40,30:40:1427:30:1076:-76.0808,0,-107.655	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/1:72:37,35:37:1304:35:1248:-90.9042,0,-95.9835	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	0/0:78:78,0:78:2795:0:0:0,-23.4803,-251.789	0/0:64:64,0:64:2267:0:0:0,-19.2659,-204.293
chr07	23547759	.	TATAA	GATAT,TATAT	181188	PASS	AB=0.519524,0.477425;ABP=13.8637,17.5203;AC=141,45;AF=0.758065,0.241935;AN=186;AO=5108,1577;CIGAR=1X3M1X,4M1X;DP=6702;DPB=6703;DPRA=36.413,1.44348;EPP=396.428,12.9589;EPPR=0;GTI=1;LEN=5,1;MEANALT=1.76087,2.18519;MQM=59.9561,59.9962;MQMR=0;NS=93;NUMALT=2;ODDS=4.17671;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=70,70;PQR=0;PRO=1;QA=180392,56109;QR=0;RO=0;RPL=0,0;RPP=11094.9,3427.42;RPPR=0;RPR=5108,1577;RUN=1,1;SAF=3035,831;SAP=396.428,12.9589;SAR=2073,746;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,19,20:0:0:19,20:662,712:-112.159,-58.3289,-52.6093,-54.1268,0,-48.1062	1/2:77:0,51,26:0:0:51,26:1783,936:-221.772,-76.7327,-61.3802,-145.395,0,-137.569	1/2:45:0,21,24:0:0:21,24:745,847:-130.023,-69.324,-63.0024,-61.0524,0,-53.8277	1/2:81:0,44,37:0:0:44,37:1549,1320:-234.065,-107.964,-94.7185,-126.456,0,-115.318	1/1:28:0,28,0:0:0:28,0:991,0:-89.5044,-8.42884,0,-89.5044,-8.42884,-89.5044	1/1:26:0,26,0:0:0:26,0:910,0:-82.2132,-7.82678,0,-82.2132,-7.82678,-82.2132	1/2:65:0,31,34:0:0:31,34:1078,1186:-184.436,-96.8066,-87.4747,-87.9772,0,-77.7422	1/1:118:0,118,0:0:0:118,0:4171,0:-375.508,-35.5215,0,-375.508,-35.5215,-375.508	1/1:68:0,67,1:0:0:67,1:2364,36:-212.66,-20.169,0,-209.722,-16.8718,-209.421	1/2:67:0,33,34:0:0:33,34:1175,1216:-195.279,-99.5115,-89.5776,-96.1237,0,-85.8887	1/1:93:0,93,0:0:0:93,0:3281,0:-295.512,-27.9958,0,-295.512,-27.9958,-295.512	1/2:148:0,72,76:0:0:72,76:2553,2684:-426.921,-218.926,-197.252,-208.348,0,-185.47	1/2:157:0,93,64:0:0:93,64:3277,2276:-452.638,-185.837,-157.841,-267.156,0,-247.89	1/2:101:0,61,39:0:0:61,39:2147,1396:-288.58,-113.888,-95.525,-174.737,0,-162.996	1/2:128:0,72,56:0:0:72,56:2578,1987:-372.486,-162.246,-140.572,-210.596,0,-193.738	1/1:127:0,126,1:0:0:126,1:4444,36:-399.778,-37.9298,0,-396.84,-34.6325,-396.539	1/1:110:0,110,0:0:0:110,0:3882,0:-349.575,-33.1133,0,-349.575,-33.1133,-349.575	1/1:97:0,97,0:0:0:97,0:3446,0:-310.355,-29.1999,0,-310.355,-29.1999,-310.355	1/2:66:0,35,30:0:0:35,30:1253,1064:-188.864,-86.6811,-76.1451,-102.179,0,-93.1483	1/2:70:0,34,35:0:0:34,35:1174,1237:-196.114,-100.737,-90.5016,-95.3676,0,-84.8316	1/1:77:0,75,0:0:0:75,0:2617,0:-235.455,-22.5773,0,-235.455,-22.5773,-235.455	1/1:21:0,21,0:0:0:21,0:741,0:-66.9562,-6.32163,0,-66.9562,-6.32163,-66.9562	1/1:57:0,56,1:0:0:56,1:1979,36:-178.013,-16.8577,0,-175.076,-13.5604,-174.775	1/1:38:0,38,0:0:0:38,0:1341,0:-120.99,-11.4391,0,-120.99,-11.4391,-120.99	1/2:30:0,13,17:0:0:13,17:454,608:-86.8608,-49.9345,-46.0211,-37.279,0,-32.1615	1/2:127:0,75,52:0:0:75,52:2632,1852:-365.504,-151.306,-128.729,-214.552,0,-198.898	1/1:81:0,81,0:0:0:81,0:2852,0:-256.92,-24.3834,0,-256.92,-24.3834,-256.92	1/2:64:0,31,33:0:0:31,33:1068,1178:-183.135,-96.3925,-87.0606,-87.0928,0,-77.1588	1/1:75:0,74,0:0:0:74,0:2590,0:-233,-22.2762,0,-233,-22.2762,-233	1/2:31:0,21,10:0:0:21,10:743,360:-90.2427,-29.734,-23.4124,-60.8665,0,-57.8562	1/1:69:0,69,0:0:0:69,0:2400,0:-216.245,-20.7711,0,-216.245,-20.7711,-216.245	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:9:0,9,0:0:0:9,0:315,0:-28.688,-2.70927,0,-28.688,-2.70927,-28.688	1/1:2:0,2,0:0:0:2,0:69,0:-6.55254,-0.60206,0,-6.55254,-0.60206,-6.55254	1/2:4:0,2,2:0:0:2,2:66,72:-11.5557,-6.23466,-5.6326,-5.66589,0,-5.06383	1/2:5:0,2,3:0:0:2,3:65,104:-14.0374,-8.79971,-8.19765,-5.57123,0,-4.66814	1/1:357:0,356,1:0:0:356,1:12632,36:-1136.3,-107.167,0,-1133.36,-103.869,-1133.06	1/2:29:0,11,18:0:0:11,18:392,648:-85.1848,-53.2333,-49.922,-32.309,0,-26.8905	1/2:105:0,58,47:0:0:58,47:2075,1649:-303.747,-134.548,-117.088,-169.553,0,-155.405	1/2:4:0,2,2:0:0:2,2:72,68:-11.7405,-5.85565,-5.25359,-6.23466,0,-5.6326	1/2:55:0,25,30:0:0:25,30:891,1072:-160.389,-87.7616,-80.2358,-72.9845,0,-63.9536	1/2:69:0,38,30:0:0:38,30:1354,1072:-197.912,-87.5424,-76.1032,-110.504,0,-101.473	1/2:88:0,43,45:0:0:43,45:1514,1583:-252.468,-129.213,-116.269,-123.607,0,-110.061	1/2:174:0,93,79:0:0:93,79:3265,2811:-494.891,-229.167,-201.171,-265.796,0,-242.014	1/2:114:0,56,58:0:0:56,58:1993,2073:-331.81,-169.379,-152.521,-162.787,0,-145.327	1/1:40:0,40,0:0:0:40,0:1402,0:-126.477,-12.0412,0,-126.477,-12.0412,-126.477	1/1:40:0,40,0:0:0:40,0:1421,0:-128.186,-12.0412,0,-128.186,-12.0412,-128.186	1/2:80:0,36,44:0:0:36,44:1273,1576:-232.567,-128.886,-118.049,-104.036,0,-90.7911	1/1:32:0,32,0:0:0:32,0:1111,0:-100.295,-9.63296,0,-100.295,-9.63296,-100.295	1/1:44:0,43,1:0:0:43,1:1508,36:-135.653,-12.9443,0,-132.716,-9.64705,-132.415	1/1:36:0,36,0:0:0:36,0:1260,0:-113.702,-10.8371,0,-113.702,-10.8371,-113.702	.:.:.:.:.:.:.:.	1/2:54:0,31,23:0:0:31,23:1108,807:-156.372,-66.0255,-56.6935,-90.6996,0,-83.7759	1/1:18:0,18,0:0:0:18,0:637,0:-57.6582,-5.41854,0,-57.6582,-5.41854,-57.6582	2/2:2:0,0,2:0:0:0,2:0,68:-6.45771,-6.45771,-6.45771,-0.60206,-0.60206,0	1/2:41:0,19,22:0:0:19,22:671,770:-117.642,-62.9967,-57.2771,-54.9973,0,-48.3746	1/2:35:0,20,15:0:0:20,15:707,536:-101.638,-44.0594,-38.0388,-57.9346,0,-53.4191	1/2:5:0,3,2:0:0:3,2:107,72:-14.9552,-6.23466,-5.33157,-9.07908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chr07	23570509	.	C	T	75225.3	PASS	AB=0.470372;ABP=19.609;AC=139;AF=0.739362;AN=188;AO=3572;CIGAR=1X;DP=4737;DPB=4737;DPRA=34.3043;EPP=7759.51;EPPR=2524.1;GTI=3;LEN=1;MEANALT=1;MQM=59.8667;MQMR=59.9365;NS=94;NUMALT=1;ODDS=0.0460623;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127596;QR=41277;RO=1165;RPL=3572;RPP=7759.51;RPPR=2524.1;RPR=0;RUN=1;SAF=0;SAP=7759.51;SAR=3572;SRF=0;SRP=2532.78;SRR=1165;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:12,15:12:424:15:536:-40.447,0,-30.3686	0/1:32:12,20:12:428:20:716:-55.1266,0,-29.2258	0/1:140:73,67:73:2567:67:2408:-174.832,0,-189.132	0/1:95:55,40:55:1980:40:1397:-97.4153,0,-149.747	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:36:16,20:16:572:20:720:-54.2917,0,-40.9763	1/1:71:0,71:0:0:71:2510:-226.15,-21.3731,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:27:19,8:19:669:8:288:-18.1396,0,-52.4061	1/1:63:0,63:0:0:63:2264:-204.005,-18.9649,0	0/1:65:36,29:36:1288:29:1040:-74.3392,0,-96.3865	0/1:40:24,16:24:856:16:576:-40.1338,0,-65.3199	0/1:41:22,19:22:792:19:680:-49.1869,0,-59.2634	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:36:0,36:0:0:36:1292:-116.583,-10.8371,0	1/1:19:0,19:0:0:19:684:-61.5186,-5.71957,0	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/1:87:39,48:39:1351:48:1720:-128.895,0,-95.6925	1/1:48:0,48:0:0:48:1714:-154.545,-14.4494,0	1/1:65:0,65:0:0:65:2317:-208.789,-19.567,0	1/1:36:0,36:0:0:36:1277:-115.231,-10.8371,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:39:22,17:22:792:17:608:-43.3119,0,-59.8655	0/1:97:54,43:54:1913:43:1528:-108.612,0,-143.246	1/1:143:0,143:0:0:143:5050:-454.643,-43.0473,0	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	1/1:199:0,199:0:0:199:7129:-641.62,-59.905,0	0/1:60:39,21:39:1362:21:752:-49.9445,0,-104.812	1/1:62:2,60:2:68:60:2130:-185.507,-12.2062,0	0/1:5:1,4:1:32:4:144:-11.8085,0,-1.69416	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:118:0,118:0:0:118:4218:-379.776,-35.5215,0	0/1:52:24,28:24:845:28:993:-74.0289,0,-60.7135	0/1:30:16,14:16:568:14:504:-36.6672,0,-42.421	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:56:34,22:34:1216:22:792:-54.7398,0,-92.8889	0/1:36:23,13:23:809:13:468:-31.6226,0,-62.2912	0/1:107:53,54:53:1881:54:1929:-141.67,0,-137.357	0/1:34:20,14:20:716:14:500:-35.1012,0,-54.5327	0/1:33:22,11:22:788:11:396:-26.0488,0,-61.3108	1/1:76:0,76:0:0:76:2732:-246.107,-22.8783,0	1/1:64:0,64:0:0:64:2286:-205.993,-19.2659,0	0/1:96:42,54:42:1466:54:1935:-145.524,0,-103.332	1/1:48:0,48:0:0:48:1728:-155.801,-14.4494,0	1/1:72:0,72:0:0:72:2573:-231.183,-21.6742,0	1/1:70:0,70:0:0:70:2504:-225.595,-21.0721,0	0/1:10:7,3:7:237:3:108:-7.06487,0,-18.6488	0/1:94:46,48:46:1621:48:1709:-125.797,0,-117.88	1/1:62:0,62:0:0:62:2213:-199.432,-18.6639,0	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/1:88:49,39:49:1741:39:1396:-99.4485,0,-130.482	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:43:0,43:0:0:43:1525:-137.536,-12.9443,0	1/1:68:1,67:1:36:67:2393:-212.027,-16.8718,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:98:0,98:0:0:98:3486:-313.903,-29.5009,0	1/1:87:5,82:5:180:82:2906:-245.099,-9.63755,0	0/1:38:9,29:9:324:29:1044:-82.8357,0,-18.0667	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	0/1:75:35,40:35:1237:40:1426:-106.037,0,-89.055	0/1:81:55,26:55:1946:26:932:-59.8154,0,-151.029	0/1:48:29,19:29:1032:19:671:-46.2655,0,-78.7394	1/1:25:0,25:0:0:25:875:-79.0061,-7.52575,0	1/1:28:0,28:0:0:28:1008:-90.766,-8.42884,0	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:42:0,42:0:0:42:1489:-134.303,-12.6433,0	1/1:42:0,42:0:0:42:1504:-135.654,-12.6433,0	1/1:69:0,69:0:0:69:2472:-222.731,-20.7711,0	0/1:76:43,33:43:1510:33:1171:-82.4464,0,-113.311	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:5:0,5:0:0:5:169:-15.5415,-1.50515,0	1/1:59:1,58:1:36:58:2088:-184.592,-14.1625,0	1/1:77:0,77:0:0:77:2753:-248.012,-23.1793,0	1/1:56:0,56:0:0:56:1985:-178.922,-16.8577,0	1/1:23:0,23:0:0:23:824:-74.4815,-6.92369,0	0/1:40:19,21:19:672:21:756:-56.326,0,-48.7656	0/1:18:12,6:12:428:6:216:-14.372,0,-33.3535	0/1:83:37,46:37:1277:46:1648:-123.611,0,-90.2402	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:47:0,47:0:0:47:1671:-150.675,-14.1484,0	1/1:51:0,51:0:0:51:1806:-162.549,-15.3525,0	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	0/1:87:46,41:46:1648:41:1476:-106.942,0,-122.419	0/1:42:28,14:28:1000:14:504:-33.0548,0,-77.6721	1/1:78:0,78:0:0:78:2754:-248.1,-23.4803,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0
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chr07	23692067	.	C	A	19443.2	PASS	AB=0.5188;ABP=9.86881;AC=42;AF=0.228261;AN=184;AO=1162;CIGAR=1X;DP=4897;DPB=4897;DPRA=1.06992;EPP=2526.26;EPPR=8109.12;GTI=0;LEN=1;MEANALT=1.02222;MQM=60;MQMR=60;NS=92;NUMALT=1;ODDS=2.40859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41385;QR=130922;RO=3733;RPL=1162;RPP=2526.26;RPPR=8109.12;RPR=0;RUN=1;SAF=1162;SAP=2526.26;SAR=0;SRF=3733;SRP=8109.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:10,12:10:356:12:432:-32.5985,0,-25.7586	0/1:40:24,16:24:852:16:572:-39.7722,0,-64.9592	0/1:108:61,47:61:2130:47:1688:-119.696,0,-159.454	0/1:135:66,69:66:2347:69:2443:-179.485,0,-170.85	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/0:14:14,0:14:486:0:0:0,-4.21442,-44.068	0/1:73:33,40:33:1144:40:1404:-104.679,0,-81.2876	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/0:47:47,0:47:1648:0:0:0,-14.1484,-148.605	0/1:38:23,15:23:807:15:540:-37.4974,0,-61.51	0/0:22:22,0:22:764:0:0:0,-6.62266,-69.0768	0/1:103:53,50:53:1863:50:1786:-130.017,0,-136.943	0/1:68:24,44:24:843:44:1580:-122.022,0,-55.718	0/1:28:13,15:13:447:15:531:-39.6931,0,-32.1288	0/1:58:31,27:31:1075:27:964:-69.6171,0,-79.5948	0/0:55:55,0:55:1882:0:0:0,-16.5566,-169.655	0/0:27:27,0:27:934:0:0:0,-8.12781,-84.3712	0/0:28:28,0:28:979:0:0:0,-8.42884,-88.422	0/1:16:10,6:10:347:6:216:-14.974,0,-26.7471	0/1:82:40,41:40:1406:41:1436:-104.827,0,-102.132	0/0:78:78,0:78:2680:0:0:0,-23.4803,-241.441	0/0:70:70,0:70:2482:0:0:0,-21.0721,-223.633	0/0:52:52,0:52:1843:0:0:0,-15.6536,-166.15	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.136	0/1:33:18,15:18:631:15:540:-39.0025,0,-47.1817	0/1:144:71,73:71:2518:73:2593:-190.27,0,-183.523	0/0:108:108,0:108:3786:0:0:0,-32.5112,-340.94	0/1:21:8,13:8:288:13:451:-34.5982,0,-19.9458	0/0:141:141,0:141:4951:0:0:0,-42.4452,-445.745	0/1:88:41,47:41:1431:47:1688:-125.716,0,-102.592	0/0:87:87,0:87:2984:0:0:0,-26.1896,-268.789	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:4:2,2:2:63:2:72:-5.6326,0,-4.77903	0/0:142:142,0:142:4971:0:0:0,-42.7463,-447.546	0/1:57:19,38:19:655:38:1349:-104.55,0,-42.1124	0/1:28:13,15:13:451:15:540:-40.5077,0,-32.491	.:.:.:.:.:.:.:.	0/1:94:37,57:37:1309:57:2029:-154.585,0,-89.8127	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:92:40,52:40:1370:52:1858:-139.805,0,-95.8949	0/1:27:15,12:15:509:12:432:-31.0934,0,-38.0033	0/1:39:21,18:21:705:18:636:-45.8279,0,-52.0225	0/0:73:73,0:73:2567:0:0:0,-21.9752,-231.279	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/1:83:31,52:31:1108:52:1860:-142.694,0,-75.0455	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:86:86,0:86:3005:0:0:0,-25.8886,-270.682	.:.:.:.:.:.:.:.	0/1:67:33,34:33:1180:34:1205:-88.5849,0,-86.339	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/1:83:28,55:28:976:55:1956:-151.33,0,-63.1642	0/1:35:21,14:21:752:14:496:-34.4382,0,-57.4702	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/0:82:82,0:82:2850:0:0:0,-24.6845,-256.737	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:132:132,0:132:4661:0:0:0,-39.736,-419.654	0/0:79:78,0:78:2728:0:0:0,-23.4803,-245.402	0/1:39:19,20:19:650:20:711:-52.5761,0,-47.0762	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.136	0/1:92:51,41:51:1828:41:1462:-104.181,0,-137.106	0/1:63:18,45:18:632:45:1609:-126.134,0,-38.2419	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/0:40:40,0:40:1390:0:0:0,-12.0412,-125.395	0/0:36:36,0:36:1254:0:0:0,-10.8371,-113.161	0/1:9:4,5:4:135:5:180:-13.8428,0,-9.77324	0/0:74:74,0:74:2603:0:0:0,-22.2762,-234.517	0/0:52:52,0:52:1812:0:0:0,-15.6536,-163.359	0/0:42:42,0:42:1473:0:0:0,-12.6433,-132.862	0/0:79:78,1:78:2755:1:36:0,-20.1831,-244.593	0/1:22:6,16:6:216:16:572:-45.1908,0,-13.1679	0/0:68:68,0:68:2399:0:0:0,-20.47,-216.165	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:47:46,1:46:1616:1:36:0,-10.5501,-142.128	0/0:55:55,0:55:1940:0:0:0,-16.5566,-174.874	0/0:118:117,1:117:4139:1:36:0,-31.9233,-369.097	0/0:46:46,0:46:1593:0:0:0,-13.8474,-143.655	0/1:46:24,22:24:856:22:775:-56.2244,0,-63.5137	0/1:34:19,15:19:662:15:540:-38.7015,0,-49.6674	0/1:105:56,49:56:1924:49:1751:-126.265,0,-141.824	0/0:24:24,0:24:830:0:0:0,-7.22472,-75.0149	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	0/0:56:56,0:56:1943:0:0:0,-16.8577,-175.143	0/1:23:13,10:13:452:10:351:-25.003,0,-34.0874	0/1:45:28,17:28:966:17:597:-40.5098,0,-73.7034	0/1:47:24,23:24:852:23:820:-59.9741,0,-62.852	0/0:100:100,0:100:3511:0:0:0,-30.103,-316.2	0/0:75:75,0:75:2628:0:0:0,-22.5772,-236.765
chr07	23726913	.	C	T	216454	PASS	AB=0.460125;ABP=78.1683;AC=143;AF=0.760638;AN=188;AO=10106;CIGAR=1X;DP=13054;DPB=13054;DPRA=0;EPP=21947.9;EPPR=6398;GTI=2;LEN=1;MEANALT=1.03191;MQM=52.4584;MQMR=59.6353;NS=94;NUMALT=1;ODDS=0.926442;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=362318;QR=105284;RO=2945;RPL=0;RPP=21947.9;RPPR=6398;RPR=10106;RUN=1;SAF=10106;SAP=21947.9;SAR=0;SRF=2945;SRP=6398;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:39,47:39:1392:47:1677:-124.951,0,-99.6904	0/1:216:94,122:94:3376:122:4384:-327.538,0,-238.908	0/1:139:62,77:62:2216:77:2772:-206.994,0,-157.845	0/1:378:266,111:266:9519:111:3969:-242.513,0,-742.794	1/1:69:0,69:0:0:69:2469:-221.482,-20.7711,0	1/1:96:0,96:0:0:96:3429:-307.076,-28.8989,0	0/1:206:135,71:135:4832:71:2540:-166.431,0,-372.813	1/1:62:1,61:1:36:61:2192:-192.412,-15.0656,0	1/1:160:0,160:0:0:160:5752:-515.468,-48.1648,0	0/1:103:55,48:55:1976:48:1720:-123.856,0,-147.099	1/1:32:1,31:1:36:31:1112:-96.0959,-6.03469,0	0/1:84:43,41:43:1524:41:1476:-107.255,0,-112.142	0/1:66:28,38:28:1008:38:1364:-102.618,0,-71.1638	0/1:55:23,32:23:824:32:1152:-86.5735,0,-57.9267	0/1:72:31,41:31:1108:41:1472:-110.906,0,-78.3476	1/1:33:0,33:0:0:33:1184:-106.519,-9.93399,0	1/1:56:0,56:0:0:56:2016:-181.268,-16.8577,0	1/1:50:0,50:0:0:50:1800:-161.625,-15.0515,0	0/1:17:10,7:10:360:7:252:-17.8536,0,-27.6186	0/1:323:179,144:179:6408:144:5150:-364.691,0,-479.512	1/1:227:0,227:0:0:227:8133:-729.652,-68.3338,0	1/1:134:0,134:0:0:134:4820:-432.968,-40.338,0	1/1:221:0,221:0:0:221:7944:-713.82,-66.5276,0	1/1:260:0,260:0:0:260:9325:-835.213,-78.2678,0	0/1:112:51,61:51:1816:61:2166:-160.608,0,-130.004	0/1:485:290,195:290:10340:195:6997:-481.762,0,-784.264	1/1:358:4,354:4:144:354:12707:-1124.03,-94.4551,0	0/1:40:18,22:18:644:22:792:-59.0747,0,-46.2494	1/1:459:0,459:0:0:459:16447:-1475.84,-138.173,0	0/1:267:128,139:128:4579:139:4966:-363.729,0,-331.821	1/1:324:0,324:0:0:324:11637:-1043.58,-97.5337,0	1/1:1:0,1:0:0:1:36:-3.58648,-0.30103,0	1/1:11:0,11:0:0:11:381:-34.5181,-3.31133,0	1/1:5:0,5:0:0:5:180:-16.5105,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.82162,-0.60206,0	0/1:13:6,7:6:216:7:252:-19.0577,0,-15.8771	1/1:223:0,223:0:0:223:8000:-717.609,-67.1297,0	0/1:249:121,128:121:4339:128:4558:-332.831,0,-315.677	0/1:38:21,17:21:756:17:612:-43.835,0,-56.9199	0/1:3:1,2:1:36:2:72:-5.91123,0,-2.69518	0/1:249:151,98:151:5404:98:3501:-238.822,0,-411.138	0/1:27:9,18:9:320:18:648:-50.3343,0,-21.0038	0/1:284:151,133:151:5392:133:4754:-339.996,0,-399.711	0/1:70:38,32:38:1355:32:1148:-82.407,0,-101.177	0/1:54:29,25:29:1036:25:900:-64.7512,0,-77.2891	1/1:154:0,154:0:0:154:5532:-496.962,-46.3586,0	1/1:121:0,121:0:0:121:4348:-390.352,-36.4246,0	0/1:160:95,65:95:3396:65:2336:-161.452,0,-257.691	1/1:184:0,184:0:0:184:6585:-591.485,-55.3895,0	1/1:305:0,305:0:0:305:10938:-982.71,-91.8142,0	1/1:304:0,304:0:0:304:10906:-979.012,-91.5131,0	0/1:4:1,3:1:36:3:108:-8.85676,0,-2.39415	0/1:194:89,105:89:3184:105:3753:-277.315,0,-228.013	1/1:142:0,142:0:0:142:5096:-457.749,-42.7463,0	0/1:8:4,4:4:144:4:144:-9.90436,0,-10.9054	0/1:237:148,88:148:5279:88:3168:-212.135,0,-403.939	0/1:109:63,46:63:2268:46:1644:-114.769,0,-171.547	0/1:3:1,2:1:36:2:72:-5.92394,0,-2.69518	1/1:15:0,15:0:0:15:536:-48.5082,-4.51545,0	1/1:134:0,134:0:0:134:4797:-429.982,-40.338,0	1/1:114:0,113:0:0:113:4068:-364.988,-34.0164,0	0/1:7:2,5:2:72:5:180:-14.4214,0,-4.72951	1/1:387:0,387:0:0:387:13810:-1240.18,-116.499,0	1/1:302:0,302:0:0:302:10837:-972.52,-90.9111,0	0/1:68:42,26:42:1488:26:936:-63.5525,0,-113.744	1/1:94:0,94:0:0:94:3365:-302.633,-28.2968,0	0/1:242:139,103:139:4973:103:3676:-256.291,0,-374.812	0/1:55:38,17:38:1339:17:612:-38.592,0,-104.235	0/1:18:7,11:7:252:11:396:-30.4463,0,-17.5996	1/1:94:0,94:0:0:94:3380:-303.386,-28.2968,0	1/1:82:1,81:1:36:81:2907:-257.335,-21.0862,0	0/1:24:6,18:6:216:18:648:-51.3379,0,-12.5658	1/1:252:0,252:0:0:252:9026:-805.371,-75.8596,0	1/1:122:0,122:0:0:122:4380:-393.128,-36.7257,0	1/1:272:0,272:0:0:272:9732:-870.952,-81.8802,0	1/1:259:0,259:0:0:259:9267:-831.235,-77.9668,0	0/1:191:89,102:89:3175:102:3668:-270.957,0,-228.292	1/1:180:0,180:0:0:180:6465:-579.698,-54.1854,0	1/1:8:0,8:0:0:8:288:-25.9366,-2.40824,0	1/1:184:2,182:2:72:182:6510:-575.978,-48.5528,0	1/1:205:0,205:0:0:205:7348:-658.819,-61.7112,0	1/1:350:0,350:0:0:350:12553:-1127.28,-105.361,0	1/1:117:0,117:0:0:117:4212:-377.556,-35.2205,0	0/1:55:24,31:24:860:31:1112:-83.6946,0,-61.1652	0/1:108:51,57:51:1832:57:2048:-151.541,0,-132.64	0/1:169:73,96:73:2624:96:3447:-258.892,0,-185.522	1/1:52:0,52:0:0:52:1857:-165.885,-15.6536,0	1/1:62:0,62:0:0:62:2213:-198.68,-18.6639,0	1/1:65:0,65:0:0:65:2340:-210.333,-19.567,0	0/1:26:13,13:13:468:13:464:-34.138,0,-34.6222	0/1:58:22,36:22:758:36:1296:-98.5844,0,-51.0424	0/1:70:50,20:50:1784:20:716:-43.606,0,-139.766	1/1:155:0,155:0:0:155:5568:-499.762,-46.6597,0	1/1:114:0,114:0:0:114:4100:-367.351,-34.3174,0
chr07	23726921	.	T	C	213286	PASS	AB=0.454946;ABP=99.0831;AC=143;AF=0.760638;AN=188;AO=10012;CIGAR=1X;DP=12993;DPB=12993;DPRA=0;EPP=21743.8;EPPR=6469.66;GTI=2;LEN=1;MEANALT=1.03191;MQM=52.477;MQMR=59.6132;NS=94;NUMALT=1;ODDS=0.249012;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=357845;QR=106586;RO=2978;RPL=0;RPP=21743.8;RPPR=6469.66;RPR=10012;RUN=1;SAF=10012;SAP=21743.8;SAR=0;SRF=2978;SRP=6469.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:87:39,48:39:1396:48:1711:-127.711,0,-99.7495	0/1:216:94,122:94:3346:122:4347:-324.254,0,-236.224	0/1:142:66,76:66:2372:76:2716:-201.089,0,-170.967	0/1:371:262,109:262:9393:109:3911:-239.438,0,-732.953	1/1:69:0,69:0:0:69:2456:-220.35,-20.7711,0	1/1:97:0,97:0:0:97:3480:-311.338,-29.1999,0	0/1:212:141,71:141:5049:71:2539:-164.592,0,-390.53	1/1:62:1,61:1:36:61:2170:-190.451,-15.0656,0	1/1:160:0,160:0:0:160:5720:-512.741,-48.1648,0	0/1:103:54,48:54:1932:48:1711:-122.987,0,-143.088	1/1:32:0,32:0:0:32:1152:-103.29,-9.63296,0	0/1:84:42,42:42:1508:42:1503:-109.682,0,-110.704	0/1:68:29,39:29:1040:39:1396:-105.026,0,-73.4397	0/1:55:23,32:23:824:32:1148:-86.2195,0,-57.9267	0/1:71:30,41:30:1080:41:1472:-111.207,0,-76.1309	1/1:32:0,32:0:0:32:1144:-102.934,-9.63296,0	1/1:55:0,55:0:0:55:1964:-176.619,-16.5567,0	1/1:51:0,51:0:0:51:1832:-164.508,-15.3525,0	0/1:17:10,7:10:360:7:252:-17.8536,0,-27.6186	0/1:319:176,142:176:6300:142:5060:-357.939,0,-471.1	1/1:225:0,225:0:0:225:8043:-721.614,-67.7318,0	1/1:132:0,132:0:0:132:4712:-423.48,-39.736,0	1/1:220:0,220:0:0:220:7883:-708.351,-66.2266,0	1/1:258:0,258:0:0:258:9228:-826.533,-77.6657,0	0/1:115:53,62:53:1889:62:2224:-164.904,0,-135.666	0/1:497:303,194:303:10827:194:6911:-470.572,0,-824.598	1/1:357:3,354:3:108:354:12659:-1122.65,-97.3925,0	0/1:39:18,21:18:644:21:752:-55.7908,0,-46.5504	1/1:451:3,447:3:108:447:15957:-1421.52,-125.748,0	0/1:266:127,139:127:4545:139:4980:-365.298,0,-329.066	1/1:320:0,320:0:0:320:11435:-1025.47,-96.3296,0	1/1:1:0,1:0:0:1:36:-3.58648,-0.30103,0	1/1:11:0,11:0:0:11:392:-35.512,-3.31133,0	1/1:5:0,5:0:0:5:171:-15.6911,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.82162,-0.60206,0	0/1:13:6,7:6:216:7:252:-19.0577,0,-15.8771	1/1:225:0,225:0:0:225:8029:-720.447,-67.7318,0	0/1:251:124,127:124:4418:127:4503:-327.595,0,-322.181	0/1:39:21,18:21:756:18:648:-46.7643,0,-56.6189	0/1:3:1,2:1:36:2:72:-5.91123,0,-2.69518	0/1:245:149,96:149:5337:96:3444:-234.91,0,-406.324	0/1:28:9,19:9:324:19:680:-52.9064,0,-21.0663	0/1:281:151,130:151:5408:130:4648:-331.414,0,-401.923	0/1:72:39,33:39:1404:33:1176:-84.3214,0,-104.981	0/1:52:29,23:29:1044:23:828:-58.8985,0,-78.612	1/1:154:0,154:0:0:154:5508:-494.927,-46.3586,0	1/1:118:0,118:0:0:118:4213:-378.27,-35.5215,0	0/1:159:99,60:99:3548:60:2144:-144.525,0,-271.664	1/1:185:0,185:0:0:185:6615:-594.385,-55.6906,0	1/1:297:0,297:0:0:297:10623:-954.608,-89.4059,0	1/1:299:0,299:0:0:299:10674:-958.404,-90.008,0	0/1:4:1,3:1:36:3:104:-8.48725,0,-2.39415	0/1:192:87,105:87:3124:105:3749:-277.427,0,-223.217	1/1:142:0,142:0:0:142:5068:-455.077,-42.7463,0	0/1:8:4,4:4:144:4:144:-9.90436,0,-10.9054	0/1:233:147,86:147:5258:86:3088:-205.968,0,-403.156	0/1:109:64,45:64:2281:45:1600:-110.828,0,-172.72	0/1:3:1,2:1:36:2:72:-5.92394,0,-2.69518	1/1:15:0,15:0:0:15:536:-48.5082,-4.51545,0	1/1:137:0,137:0:0:137:4904:-439.467,-41.2411,0	1/1:113:0,113:0:0:113:4043:-363.081,-34.0164,0	0/1:6:1,5:1:36:5:180:-14.7224,0,-1.79209	1/1:377:0,377:0:0:377:13466:-1209.44,-113.488,0	1/1:300:1,299:1:36:299:10672:-954.139,-86.7107,0	0/1:68:43,25:43:1544:25:892:-59.7493,0,-118.783	1/1:92:0,92:0:0:92:3296:-296.441,-27.6948,0	0/1:246:144,102:144:5172:102:3656:-254.247,0,-391.214	0/1:52:37,15:37:1316:15:536:-32.8546,0,-103.071	0/1:18:7,11:7:252:11:392:-30.09,0,-17.5996	1/1:94:0,94:0:0:94:3360:-301.621,-28.2968,0	1/1:80:0,80:0:0:80:2868:-257.437,-24.0824,0	0/1:22:6,16:6:216:16:576:-45.4723,0,-13.1679	1/1:249:0,249:0:0:249:8928:-796.836,-74.9565,0	1/1:122:0,122:0:0:122:4368:-391.551,-36.7257,0	1/1:273:0,273:0:0:273:9736:-871.243,-82.1812,0	1/1:258:0,258:0:0:258:9207:-825.898,-77.6657,0	0/1:193:93,100:93:3287:100:3572:-262.29,0,-237.755	1/1:179:0,179:0:0:179:6432:-576.746,-53.8844,0	1/1:8:0,8:0:0:8:288:-25.9366,-2.40824,0	1/1:181:2,179:2:72:179:6371:-563.54,-47.6497,0	1/1:200:0,200:0:0:200:7135:-639.734,-60.206,0	1/1:349:0,349:0:0:349:12467:-1119.62,-105.059,0	1/1:116:0,116:0:0:116:4151:-372.191,-34.9195,0	0/1:56:25,31:25:892:31:1112:-83.3936,0,-63.742	0/1:108:51,57:51:1832:57:2040:-150.827,0,-132.64	0/1:171:75,96:75:2680:96:3440:-257.598,0,-189.598	1/1:50:0,50:0:0:50:1800:-160.768,-15.0515,0	1/1:62:0,62:0:0:62:2228:-200.034,-18.6639,0	1/1:64:0,64:0:0:64:2304:-207.102,-19.2659,0	0/1:25:13,12:13:468:12:428:-31.2109,0,-34.9232	0/1:59:23,36:23:828:36:1283:-97.1277,0,-57.0514	0/1:71:51,20:51:1828:20:716:-43.305,0,-143.423	1/1:152:0,152:0:0:152:5389:-483.465,-45.7566,0	1/1:113:0,113:0:0:113:4052:-363.151,-34.0164,0
chr07	23726941	.	G	A	51127.8	PASS	AB=0.540779;ABP=81.6428;AC=45;AF=0.239362;AN=188;AO=2953;CIGAR=1X;DP=13055;DPB=13055;DPRA=0.832405;EPP=6415.37;EPPR=21472.5;GTI=2;LEN=1;MEANALT=1.08163;MQM=59.5774;MQMR=52.5649;NS=94;NUMALT=1;ODDS=0.662509;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105558;QR=361068;RO=10094;RPL=2953;RPP=6415.37;RPPR=21472.5;RPR=0;RUN=1;SAF=2953;SAP=6415.37;SAR=0;SRF=10094;SRP=21921.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:47,39:47:1688:39:1400:-100.411,0,-125.94	0/1:217:123,94:123:4420:94:3368:-237.893,0,-330.331	0/1:144:78,66:78:2804:66:2376:-170.725,0,-208.383	0/1:382:115,266:115:4119:266:9499:-739.163,0,-254.773	0/0:69:69,0:69:2457:0:0:0,-20.7711,-220.433	0/0:98:97,0:97:3454:0:0:0,-29.1999,-308.821	0/1:208:68,140:68:2432:140:5007:-387.958,0,-156.218	0/0:64:62,1:62:2193:1:36:0,-15.7115,-192.808	0/0:159:156,3:156:5549:3:108:0,-38.6265,-489.096	0/1:101:47,54:47:1664:54:1940:-144.463,0,-119.427	0/0:31:31,0:31:1112:0:0:0,-9.33193,-99.6988	0/1:86:42,44:42:1499:44:1562:-114.963,0,-108.724	0/1:66:38,28:38:1368:28:1004:-70.8033,0,-102.973	0/1:53:31,22:31:1095:22:788:-55.2902,0,-82.2166	0/1:71:42,29:42:1508:29:1040:-72.5348,0,-114.446	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.6196	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.209	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.306	0/1:17:7,10:7:252:10:356:-27.2555,0,-17.8536	0/1:313:140,173:140:5024:173:6206:-464.376,0,-356.588	0/0:224:224,0:224:7975:0:0:0,-67.4307,-715.52	0/0:136:136,0:136:4880:0:0:0,-40.9401,-438.471	0/0:223:223,0:223:7994:0:0:0,-67.1297,-718.367	0/0:261:261,0:261:9321:0:0:0,-78.5688,-834.888	0/1:116:64,52:64:2292:52:1872:-133.837,0,-170.719	0/1:486:192,294:192:6863:294:10504:-798.82,0,-469.258	0/0:355:352,3:352:12597:3:108:0,-96.7905,-1117.35	0/1:40:22,18:22:788:18:648:-46.6107,0,-58.7188	0/0:459:459,0:459:16443:0:0:0,-138.173,-1475.33	0/1:262:138,124:138:4934:124:4444:-321.186,0,-362.511	0/0:322:322,0:322:11522:0:0:0,-96.9317,-1033.63	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58648	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.0624	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5105	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82162	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1284	0/0:227:227,0:227:8111:0:0:0,-68.3338,-727.757	0/1:247:125,122:125:4492:122:4369:-318.977,0,-327.751	0/1:38:18,20:18:648:20:720:-53.6814,0,-47.0653	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.91123	0/1:246:98,148:98:3516:148:5254:-398.738,0,-241.065	0/1:28:19,9:19:680:9:324:-21.0663,0,-52.9064	0/1:280:133,147:133:4752:147:5241:-387.192,0,-341.115	0/1:68:32,36:32:1152:36:1288:-95.7517,0,-83.3666	0/1:52:25,27:25:896:27:967:-71.6875,0,-65.0958	0/0:158:158,0:158:5660:0:0:0,-47.5627,-508.476	0/0:121:121,0:121:4340:0:0:0,-36.4246,-389.652	0/1:158:64,94:64:2246:94:3349:-254.064,0,-154.145	0/0:184:184,0:184:6573:0:0:0,-55.3895,-590.59	0/0:303:303,0:303:10873:0:0:0,-91.2121,-976.903	0/0:301:301,0:301:10744:0:0:0,-90.61,-964.922	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.48725	0/1:193:105,88:105:3764:88:3145:-224.906,0,-278.747	0/0:145:144,0:144:5148:0:0:0,-43.3483,-462.296	0/1:8:4,4:4:144:4:144:-10.9054,0,-9.90436	0/1:237:88,149:88:3121:149:5327:-408.169,0,-207.775	0/1:110:45,65:45:1620:65:2313:-175.296,0,-112.306	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.92394	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.8671	0/0:134:134,0:134:4789:0:0:0,-40.338,-429.276	0/0:112:112,0:112:4008:0:0:0,-33.7154,-360.024	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4214	0/0:391:391,0:391:14037:0:0:0,-117.703,-1260.51	0/0:304:304,0:304:10876:0:0:0,-91.5131,-975.944	0/1:68:25,43:25:896:43:1548:-119.143,0,-59.9703	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.055	0/1:249:104,145:104:3697:145:5171:-390.455,0,-256.875	0/1:56:17,39:17:600:39:1388:-108.344,0,-37.215	0/1:17:10,6:10:360:6:212:-14.2729,0,-27.4971	0/0:95:95,0:95:3407:0:0:0,-28.5978,-305.828	0/0:83:83,0:83:2976:0:0:0,-24.9855,-267.143	0/1:25:19,6:19:684:6:216:-12.2648,0,-54.2754	0/0:247:246,0:246:8814:0:0:0,-74.0534,-786.548	0/0:122:122,0:122:4384:0:0:0,-36.7257,-392.991	0/0:274:274,0:274:9728:0:0:0,-82.4822,-870.864	0/0:262:262,0:262:9407:0:0:0,-78.8699,-843.922	0/1:197:102,94:102:3621:94:3340:-241.294,0,-265.455	0/0:178:178,0:178:6396:0:0:0,-53.5833,-573.65	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.9366	0/0:185:183,2:183:6549:2:72:0,-48.8538,-579.474	0/0:202:202,0:202:7235:0:0:0,-60.8081,-648.688	0/0:346:346,0:346:12348:0:0:0,-104.156,-1108.93	0/0:114:114,0:114:4076:0:0:0,-34.3174,-365.548	0/1:55:31,24:31:1116:24:864:-61.5259,0,-84.0522	0/1:109:58,51:58:2080:51:1821:-131.353,0,-154.117	0/1:172:95,77:95:3408:77:2754:-196.255,0,-254.549	0/0:51:51,0:51:1828:0:0:0,-15.3525,-163.288	0/0:62:62,0:62:2211:0:0:0,-18.6639,-198.519	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.506	0/1:26:13,13:13:453:13:468:-34.6222,0,-33.1441	0/1:58:35,23:35:1260:23:820:-56.6308,0,-95.3647	0/1:70:20,50:20:720:50:1785:-139.854,0,-43.9643	0/0:154:154,0:154:5506:0:0:0,-46.3586,-494.218	0/0:115:114,0:114:4072:0:0:0,-34.3174,-364.995
chr07	23726985	.	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chr07	23895915	.	A	C	25579.1	PASS	AB=0.54199;ABP=44.4065;AC=47;AF=0.252688;AN=186;AO=1483;CIGAR=1X;DP=5387;DPB=5387;DPRA=1.29583;EPP=3171.4;EPPR=8335.45;GTI=0;LEN=1;MEANALT=1.10204;MQM=59.9858;MQMR=59.981;NS=93;NUMALT=1;ODDS=1.53904;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52852;QR=139275;RO=3897;RPL=1481;RPP=3205.96;RPPR=8361.33;RPR=2;RUN=1;SAF=4;SAP=3188.65;SAR=1479;SRF=3;SRP=8439.2;SRR=3894;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:6,22:6:208:22:784:-62.0954,0,-10.2723	0/1:39:19,20:19:680:20:716:-53.0275,0,-49.789	0/1:59:26,33:26:923:33:1184:-89.1075,0,-65.626	0/1:87:50,37:50:1783:37:1309:-91.9199,0,-134.562	0/0:15:15,0:15:517:0:0:0,-4.51545,-46.8546	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:83:42,41:42:1483:41:1472:-107.791,0,-108.778	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.12	0/0:62:61,1:61:2172:1:36:0,-15.0656,-192.149	0/1:43:14,29:14:504:29:1021:-79.256,0,-32.7538	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/1:102:48,54:48:1720:54:1921:-142.46,0,-124.38	0/1:108:53,55:53:1895:55:1976:-145.603,0,-138.316	0/1:62:25,37:25:896:37:1332:-101.519,0,-62.2965	0/1:96:39,57:39:1400:57:2040:-154.973,0,-97.4003	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:72:29,42:29:1040:42:1489:-112.57,0,-71.4962	0/1:100:58,42:58:2042:42:1504:-105.552,0,-153.946	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/1:45:22,23:22:784:23:815:-60.1244,0,-57.3376	0/1:113:59,54:59:2120:54:1928:-139.78,0,-157.052	0/0:101:101,0:101:3577:0:0:0,-30.404,-322.136	0/1:58:36,22:36:1288:22:788:-53.7851,0,-98.7638	0/0:75:73,0:73:2628:0:0:0,-21.9752,-236.407	0/1:70:42,28:42:1508:28:980:-67.4381,0,-114.943	0/0:46:45,1:45:1612:1:21:0,-11.7491,-143.272	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:250:250,0:250:8960:0:0:0,-75.2575,-806.379	0/1:51:27,24:27:972:24:856:-62.0086,0,-72.4454	0/1:82:39,43:39:1372:43:1536:-113.849,0,-99.0914	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:43:23,20:23:804:20:716:-51.8234,0,-59.7323	0/1:48:29,18:29:1040:18:644:-43.7825,0,-79.4062	0/1:43:15,28:15:540:28:1000:-77.3711,0,-35.9922	0/1:78:35,43:35:1252:43:1529:-114.421,0,-89.5047	0/1:76:35,40:35:1256:40:1411:-104.504,0,-90.5636	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/0:69:69,0:69:2449:0:0:0,-20.7711,-220.664	0/1:96:26,70:26:920:70:2481:-194.644,0,-54.2182	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:56:22,34:22:792:34:1224:-93.6094,0,-54.748	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:57:29,28:29:1036:28:989:-72.1633,0,-76.3952	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:142:141,1:141:5056:1:36:0,-39.148,-451.586	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:87:86,1:86:3088:1:36:0,-22.5913,-274.549	0/1:36:12,24:12:432:24:848:-65.8026,0,-28.3841	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/1:78:36,42:36:1292:42:1504:-112.174,0,-93.1034	0/1:99:18,81:18:644:81:2879:-229.544,0,-28.4886	0/1:38:17,21:17:608:21:756:-56.9281,0,-43.6129	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	0/0:113:113,0:113:4039:0:0:0,-34.0164,-363.698	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:45:13,32:13:468:32:1114:-87.0177,0,-28.9133	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:19:19,0:19:668:0:0:0,-5.71957,-60.4457	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:130:127,2:127:4532:2:72:0,-32.356,-401.212	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.791	0/1:76:39,37:39:1400:37:1320:-96.2237,0,-103.421	0/1:36:17,19:17:612:19:676:-50.3309,0,-44.5764	0/1:171:90,81:90:3232:81:2892:-209.039,0,-239.625	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/1:48:25,23:25:896:23:809:-58.6789,0,-66.5109	0/1:131:58,73:58:2076:73:2616:-196.253,0,-147.676	0/1:102:36,66:36:1279:66:2376:-183.392,0,-84.7074	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:109:109,0:109:3885:0:0:0,-32.8123,-349.844
chr07	23895929	.	T	A	26386.2	PASS	AB=0.545061;ABP=51.935;AC=46;AF=0.247312;AN=186;AO=1528;CIGAR=1X;DP=5559;DPB=5559;DPRA=1.40529;EPP=3295.01;EPPR=8728.01;GTI=1;LEN=1;MEANALT=1;MQM=59.981;MQMR=59.9695;NS=93;NUMALT=1;ODDS=1.58682;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54693;QR=144384;RO=4030;RPL=1528;RPP=3321.02;RPPR=8754.04;RPR=0;RUN=1;SAF=3;SAP=3295.01;SAR=1525;SRF=3;SRP=8728.01;SRR=4027;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:7,23:7:252:23:828:-65.8132,0,-13.9981	0/1:38:18,20:18:648:20:694:-51.3396,0,-47.2127	0/1:60:26,34:26:932:34:1220:-92.045,0,-66.1371	0/1:90:50,40:50:1800:40:1428:-101.724,0,-135.189	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:81:41,40:41:1476:40:1436:-105.154,0,-108.753	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.246	0/0:66:65,1:65:2336:1:36:0,-16.2697,-206.901	0/1:45:15,30:15:536:30:1076:-83.6065,0,-35.0285	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:102:46,56:46:1652:56:1988:-148.487,0,-118.263	0/1:109:53,56:53:1900:56:2008:-148.181,0,-138.466	0/1:61:25,36:25:900:36:1296:-98.5811,0,-62.9582	0/1:100:39,61:39:1389:61:2185:-166.812,0,-95.2039	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.0516	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:73:29,44:29:1040:44:1580:-120.516,0,-71.2538	0/1:99:58,41:58:2076:41:1472:-102.974,0,-157.309	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.395	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:48:24,24:24:849:24:864:-63.6331,0,-62.2784	0/1:116:62,54:62:2228:54:1927:-138.787,0,-165.864	0/0:110:110,0:110:3925:0:0:0,-33.1133,-353.442	0/1:57:36,21:36:1296:21:756:-51.2085,0,-99.7852	0/0:79:79,0:79:2810:0:0:0,-23.7814,-253.137	0/1:71:43,28:43:1529:28:1004:-69.3027,0,-116.528	0/0:50:49,1:49:1752:1:36:0,-11.503,-154.36	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:257:257,0:257:9229:0:0:0,-77.3647,-830.573	0/1:51:27,24:27:972:24:860:-62.3693,0,-72.4454	0/1:83:39,44:39:1396:44:1572:-116.784,0,-100.954	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:43:23,20:23:828:20:712:-51.4624,0,-61.8998	0/1:55:33,22:33:1157:22:792:-55.049,0,-87.8778	0/1:43:15,28:15:540:28:989:-76.3777,0,-35.9922	0/1:82:38,44:38:1364:44:1584:-118.167,0,-98.3763	0/1:78:37,41:37:1332:41:1472:-109.296,0,-96.702	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/1:97:26,71:26:936:71:2541:-199.739,0,-55.3596	0/0:55:55,0:55:1946:0:0:0,-16.5566,-175.412	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:57:22,35:22:777:35:1251:-95.7356,0,-53.0917	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:60:30,30:30:1061:30:1076:-79.0911,0,-77.7376	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:146:145,1:145:5204:1:36:0,-40.3521,-464.899	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:90:89,1:89:3192:1:36:0,-23.4944,-283.905	0/1:36:13,23:13:460:23:820:-63.2854,0,-30.8983	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:82:37,45:37:1332:45:1616:-121.046,0,-95.4979	0/1:107:19,88:19:669:88:3151:-251.604,0,-28.3237	0/1:40:18,22:18:633:22:788:-59.2036,0,-45.2539	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:120:119,1:119:4276:1:36:0,-32.5253,-381.418	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.102	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/1:43:13,30:13:468:30:1076:-84.2086,0,-29.5154	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:142:140,2:140:4994:2:72:0,-35.9095,-442.769	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/1:79:41,38:41:1472:38:1368:-99.6395,0,-108.995	0/1:40:18,22:18:644:22:779:-58.3909,0,-46.2494	0/1:174:90,84:90:3228:84:3020:-219.65,0,-238.362	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.203	0/0:69:68,0:68:2444:0:0:0,-20.47,-219.855	0/1:52:27,25:27:972:25:896:-65.3068,0,-72.1443	0/1:130:59,71:59:2120:71:2517:-187.647,0,-151.935	0/1:106:36,70:36:1296:70:2503:-193.613,0,-85.0348	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:109:108,1:108:3869:1:36:0,-29.214,-344.805
chr07	23895940	.	C	T	83021.1	PASS	AB=0.443186;ABP=79.7465;AC=140;AF=0.752688;AN=186;AO=3956;CIGAR=1X;DP=5496;DPB=5496;DPRA=15.0769;EPP=8567.32;EPPR=3318.9;GTI=1;LEN=1;MEANALT=1.01099;MQM=59.9732;MQMR=59.9708;NS=93;NUMALT=1;ODDS=0.799878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141698;QR=54914;RO=1539;RPL=3956;RPP=8593.36;RPPR=3344.91;RPR=0;RUN=1;SAF=3;SAP=8567.32;SAR=3953;SRF=3;SRP=3318.9;SRR=1536;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:23,7:23:824:7:252:-13.9981,0,-65.4524	0/1:39:20,19:20:701:19:684:-50.1502,0,-51.6716	0/1:60:34,26:34:1224:26:921:-65.1434,0,-92.4052	0/1:88:38,50:38:1364:50:1791:-134.981,0,-96.5692	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:80:40,40:40:1428:40:1432:-105.095,0,-104.735	1/1:82:0,82:0:0:82:2918:-262.662,-24.6845,0	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	0/1:44:28,16:28:1004:16:561:-37.5718,0,-77.4305	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:104:57,47:57:2044:47:1677:-119.908,0,-152.925	0/1:108:59,49:59:2120:49:1764:-126.533,0,-158.557	0/1:63:38,25:38:1349:25:900:-62.3561,0,-102.743	0/1:96:62,34:62:2201:34:1224:-81.5682,0,-169.455	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	1/1:27:0,27:0:0:27:964:-86.946,-8.12781,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:71:45,26:45:1616:26:932:-61.8861,0,-124.301	0/1:101:42,59:42:1504:59:2112:-159.945,0,-105.251	1/1:76:0,76:0:0:76:2718:-244.862,-22.8783,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:49:25,24:25:881:24:856:-62.6106,0,-64.8554	0/1:114:55,59:55:1953:59:2112:-156.031,0,-141.726	1/1:108:0,108:0:0:108:3850:-346.694,-32.5112,0	0/1:57:22,35:22:788:35:1260:-96.5468,0,-54.0861	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:71:28,43:28:989:43:1544:-117.88,0,-67.9489	1/1:49:1,48:1:21:48:1719:-152.84,-12.6522,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:253:0,253:0:0:253:9089:-817.979,-76.1606,0	0/1:51:24,27:24:860:27:964:-71.7243,0,-62.3693	0/1:82:46,36:46:1648:36:1296:-92.2595,0,-123.916	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:43:20,23:20:720:23:824:-61.539,0,-52.1845	0/1:53:27,26:27:968:26:928:-67.8837,0,-71.4828	0/1:42:27,15:27:972:15:536:-35.9316,0,-75.1546	0/1:80:48,32:48:1709:32:1152:-79.9077,0,-130.011	0/1:74:41,33:41:1472:33:1184:-84.5921,0,-110.5	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	0/1:98:71,27:71:2533:27:957:-56.9429,0,-198.719	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:99:0,99:0:0:99:3546:-319.348,-29.802,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:57:35,22:35:1244:22:788:-54.0861,0,-95.106	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:60:30,30:30:1046:30:1080:-79.4515,0,-76.3841	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:143:1,142:1:36:142:5100:-455.543,-39.449,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:90:1,89:1:36:89:3192:-283.905,-23.4944,0	0/1:36:24,12:24:837:12:428:-28.0217,0,-64.8086	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:79:43,36:43:1529:36:1288:-92.4422,0,-114.12	0/1:105:86,19:86:3084:19:684:-30.2822,0,-246.18	0/1:39:20,19:20:716:19:661:-48.0714,0,-53.0275	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:120:0,120:0:0:120:4316:-388.614,-36.1236,0	1/1:49:0,49:0:0:49:1753:-158.054,-14.7505,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:51:0,51:0:0:51:1813:-163.45,-15.3525,0	0/1:44:32,12:32:1144:12:432:-25.9759,0,-90.0242	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:143:2,141:2:72:141:5031:-446.098,-36.2106,0	1/1:112:1,110:1:36:110:3945:-351.641,-30.1759,0	0/1:76:38,38:38:1353:38:1368:-100.543,0,-99.1901	0/1:37:22,15:22:775:15:540:-37.7984,0,-58.9331	0/1:168:81,87:81:2889:87:3105:-229.103,0,-209.672	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	0/1:49:24,25:24:856:25:885:-65.2161,0,-62.6106	0/1:131:74,57:74:2652:57:2036:-144.077,0,-199.491	0/1:103:69,34:69:2460:34:1224:-79.461,0,-190.649	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:109:1,108:1:36:108:3876:-345.436,-29.214,0
chr07	23895946	.	C	T	17147.8	PASS	AB=0.351024;ABP=671.356;AC=45;AF=0.239362;AN=188;AO=1222;CIGAR=1X;DP=6164;DPB=6164;DPRA=1.46166;EPP=2656.55;EPPR=10717.1;GTI=2;LEN=1;MEANALT=1.06383;MQM=59.239;MQMR=59.3993;NS=94;NUMALT=1;ODDS=2.25061;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43721;QR=176285;RO=4934;RPL=0;RPP=2656.55;RPPR=10717.1;RPR=1222;RUN=1;SAF=1222;SAP=2656.55;SAR=0;SRF=4934;SRP=10717.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:12,5:12:432:5:176:-11.0675,0,-34.1037	0/1:51:21,30:21:752:30:1080:-82.1492,0,-52.6537	0/1:90:50,40:50:1792:40:1440:-102.161,0,-134.452	0/1:224:149,74:149:5300:74:2652:-171.317,0,-409.553	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.8988	0/0:10:9,0:9:324:0:0:0,-2.70927,-29.1461	0/1:77:59,18:59:2104:18:640:-34.7453,0,-166.387	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.223	0/0:51:51,0:51:1812:0:0:0,-15.3525,-163.34	0/1:87:69,18:69:2457:18:648:-32.4552,0,-195.034	0/0:51:51,0:51:1832:0:0:0,-15.3525,-164.909	0/1:136:76,60:76:2716:60:2148:-152.067,0,-203.744	0/1:104:70,34:70:2483:34:1224:-79.0736,0,-192.388	0/1:99:70,29:70:2512:29:1044:-64.4498,0,-196.34	0/1:82:54,28:54:1917:28:1008:-66.3473,0,-148.115	0/0:62:62,0:62:2200:0:0:0,-18.6639,-198.204	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.495	0/0:35:35,0:35:1244:0:0:0,-10.536,-111.854	0/1:33:20,13:20:712:13:460:-31.8014,0,-54.4563	0/1:143:99,44:99:3532:44:1580:-99.2517,0,-274.796	0/0:105:105,0:105:3753:0:0:0,-31.6081,-335.897	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.352	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.78	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.296	0/1:26:15,11:15:536:11:396:-28.1349,0,-40.748	0/1:171:119,52:119:4264:52:1852:-115.471,0,-332.453	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.61	0/1:34:20,14:20:700:14:496:-34.7392,0,-53.0756	0/0:163:162,0:162:5800:0:0:0,-48.7669,-521.145	0/1:115:80,35:80:2860:35:1241:-76.5845,0,-223.006	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.092	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3052	0/1:7:6,1:6:216:1:36:-1.48202,0,-17.675	0/1:11:7,4:7:244:4:144:-10.0023,0,-18.9848	0/0:159:159,0:159:5644:0:0:0,-47.8638,-508.023	0/1:81:40,40:40:1428:40:1416:-103.313,0,-104.425	0/1:56:34,22:34:1220:22:792:-54.5574,0,-93.2042	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:111:81,30:81:2908:30:1076:-63.7304,0,-228.519	0/1:82:56,26:56:2008:26:927:-59.0094,0,-156.23	0/1:64:44,20:44:1580:20:716:-45.358,0,-123.193	0/1:49:35,14:35:1248:14:504:-30.9429,0,-97.6762	0/1:60:37,23:37:1324:23:824:-56.4192,0,-101.398	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.271	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.437	0/1:135:104,31:104:3712:31:1116:-60.0762,0,-293.404	0/0:55:53,2:53:1896:2:72:0,-9.71993,-163.981	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.194	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.124	0/1:8:5,3:5:180:3:108:-7.66451,0,-14.1438	0/1:111:65,46:65:2332:46:1656:-115.519,0,-176.725	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.651	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:97:51,46:51:1820:46:1619:-116.775,0,-134.861	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6173	0/0:66:65,0:65:2328:0:0:0,-19.5669,-209.393	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.395	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:174:174,0:174:6213:0:0:0,-52.3792,-558.752	0/0:96:95,1:95:3400:1:36:0,-25.3006,-302.425	0/1:73:51,22:51:1832:22:792:-49.6223,0,-143.167	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.724	0/1:83:39,44:39:1396:44:1569:-116.489,0,-100.946	0/1:150:99,50:99:3548:50:1777:-114.977,0,-274.1	0/1:38:22,16:22:776:16:576:-40.7312,0,-58.723	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8318	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.086	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.375	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.07	0/0:111:110,0:110:3936:0:0:0,-33.1133,-354.043	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/0:41:40,1:40:1432:1:36:0,-8.74395,-125.523	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.418	0/0:65:64,0:64:2296:0:0:0,-19.2659,-206.35	0/0:95:95,0:95:3392:0:0:0,-28.5978,-305.335	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.46	0/1:88:58,30:58:2043:30:1080:-70.8452,0,-157.642	0/1:63:39,24:39:1396:24:864:-59.1039,0,-106.843	0/1:175:108,67:108:3864:67:2396:-163.199,0,-295.266	0/0:19:19,0:19:676:0:0:0,-5.71957,-60.8434	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.663	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.482	0/1:67:46,21:46:1636:21:752:-47.8155,0,-127.035	0/1:208:147,61:147:5244:61:2176:-133.48,0,-409.457	0/1:101:60,41:60:2131:41:1464:-101.638,0,-161.644	0/0:85:85,0:85:3028:0:0:0,-25.5875,-272.729	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.716
chr07	23895949	.	C	T	77652.8	PASS	AB=0.338549;ABP=798.841;AC=141;AF=0.75;AN=188;AO=3867;CIGAR=1X;DP=6203;DPB=6203;DPRA=67.4022;EPP=8400.09;EPPR=5066.88;GTI=10;LEN=1;MEANALT=1.03261;MQM=59.2211;MQMR=59.5347;NS=94;NUMALT=1;ODDS=0.171981;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138432;QR=83490;RO=2332;RPL=0;RPP=8400.09;RPPR=5066.88;RPR=3867;RUN=1;SAF=3867;SAP=8400.09;SAR=0;SRF=2332;SRP=5066.88;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:11,7:11:392:7:248:-17.2457,0,-30.2015	0/1:52:42,10:42:1504:10:360:-17.0907,0,-119.99	0/1:92:67,25:67:2396:25:896:-53.246,0,-187.548	0/1:229:144,85:144:5156:85:3048:-205.479,0,-395.124	1/1:15:0,15:0:0:15:540:-48.8988,-4.51545,0	1/1:10:0,10:0:0:10:360:-32.7434,-3.0103,0	0/1:77:45,32:45:1612:32:1136:-79.2945,0,-122.186	1/1:41:0,41:0:0:41:1468:-131.986,-12.3422,0	1/1:50:0,50:0:0:50:1791:-161.447,-15.0515,0	0/1:83:45,38:45:1612:38:1356:-97.1297,0,-120.374	1/1:51:0,51:0:0:51:1820:-163.759,-15.3525,0	0/1:137:99,38:99:3539:38:1360:-81.4595,0,-276.899	0/1:107:70,37:70:2520:37:1319:-86.801,0,-194.747	0/1:101:74,27:74:2640:27:959:-56.1606,0,-207.423	0/1:82:57,25:57:2048:25:900:-56.6342,0,-159.675	1/1:60:0,60:0:0:60:2140:-192.818,-18.0618,0	1/1:36:0,36:0:0:36:1288:-115.79,-10.8371,0	1/1:35:0,35:0:0:35:1256:-112.678,-10.5361,0	0/1:34:25,9:25:900:9:324:-19.2543,0,-71.086	0/1:142:81,61:81:2896:61:2188:-154.121,0,-217.938	1/1:103:0,103:0:0:103:3683:-330.392,-31.0061,0	1/1:49:0,49:0:0:49:1749:-157.679,-14.7505,0	1/1:33:0,33:0:0:33:1184:-106.829,-9.93399,0	1/1:33:0,33:0:0:33:1188:-107.179,-9.93399,0	0/1:25:21,4:21:752:4:144:-5.78787,0,-60.4595	0/1:171:94,77:94:3344:77:2762:-197.335,0,-249.689	1/1:78:0,78:0:0:78:2800:-252.058,-23.4803,0	0/1:33:24,9:24:860:9:324:-19.559,0,-67.7878	1/1:161:0,161:0:0:161:5771:-518.932,-48.4658,0	0/1:115:53,62:53:1896:62:2224:-165.795,0,-136.287	1/1:47:2,45:2:72:45:1616:-138.662,-7.31169,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3052,-1.20412,0	0/1:6:3,3:3:108:3:108:-8.26055,0,-8.26055	0/1:13:7,6:7:248:6:216:-15.8688,0,-18.6625	1/1:158:0,158:0:0:158:5647:-508.288,-47.5627,0	0/1:83:60,23:60:2152:23:822:-49.3033,0,-168.902	0/1:60:44,16:44:1572:16:572:-33.7065,0,-123.536	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:114:71,43:71:2544:43:1544:-104.918,0,-193.691	0/1:86:59,27:59:2124:27:967:-61.2573,0,-165.48	0/1:68:45,23:45:1600:23:816:-53.2614,0,-123.742	0/1:52:35,17:35:1248:17:612:-39.561,0,-96.9666	0/1:62:48,14:48:1712:14:500:-26.67,0,-135.7	1/1:56:0,56:0:0:56:2012:-181.35,-16.8577,0	1/1:41:0,41:0:0:41:1464:-131.841,-12.3422,0	0/1:135:64,71:64:2296:71:2544:-188.33,0,-166.226	1/1:55:2,53:2:72:53:1900:-164.391,-9.71993,0	1/1:61:0,61:0:0:61:2188:-196.912,-18.3628,0	1/1:49:0,49:0:0:49:1752:-157.875,-14.7505,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3173	0/1:110:70,39:70:2500:39:1400:-93.1272,0,-191.877	1/1:42:0,42:0:0:42:1504:-135.651,-12.6433,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:98:70,27:70:2508:27:964:-57.54,0,-196.445	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:11:0,11:0:0:11:396:-35.98,-3.31133,0	1/1:65:0,65:0:0:65:2310:-208.066,-19.567,0	1/1:84:0,84:0:0:84:3018:-271.189,-25.2865,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:176:0,176:0:0:176:6313:-567.726,-52.9813,0	1/1:94:2,92:2:72:92:3284:-288.822,-21.4601,0	0/1:75:43,32:43:1536:32:1152:-81.3945,0,-115.948	1/1:37:0,37:0:0:37:1324:-119.367,-11.1381,0	0/1:83:58,25:58:2072:25:900:-56.3308,0,-161.737	0/1:150:108,40:108:3884:40:1420:-83.0619,0,-304.714	0/1:40:32,8:32:1148:8:284:-13.8622,0,-91.584	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:26:0,26:0:0:26:932:-84.1842,-7.82678,0	0/1:21:15,6:15:536:6:216:-13.4689,0,-42.2532	1/1:55:0,55:0:0:55:1960:-176.647,-16.5567,0	1/1:55:0,55:0:0:55:1975:-177.652,-16.5567,0	1/1:68:0,68:0:0:68:2428:-218.758,-20.47,0	1/1:114:0,114:0:0:114:4086:-367.055,-34.3174,0	0/1:23:18,5:18:640:5:180:-9.62837,0,-51	1/1:41:1,40:1:36:40:1432:-125.523,-8.74396,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:27:0,27:0:0:27:972:-87.7736,-8.12781,0	1/1:63:0,63:0:0:63:2264:-203.791,-18.9649,0	1/1:95:0,95:0:0:95:3408:-306.778,-28.5979,0	1/1:50:1,49:1:36:49:1745:-153.712,-11.4532,0	0/1:90:61,29:61:2192:29:1036:-66.4413,0,-170.276	0/1:64:47,17:47:1680:17:599:-34.8396,0,-132.203	0/1:176:128,48:128:4587:48:1720:-102.097,0,-359.989	1/1:16:0,16:0:0:16:572:-51.6749,-4.81648,0	1/1:61:0,61:0:0:61:2173:-195.781,-18.3628,0	1/1:68:0,68:0:0:68:2427:-218.518,-20.47,0	0/1:68:48,20:48:1716:20:708:-43.2502,0,-134.239	0/1:207:137,70:137:4908:70:2516:-164.374,0,-379.522	0/1:105:78,27:78:2796:27:956:-54.7373,0,-220.258	1/1:84:0,84:0:0:84:3000:-270.209,-25.2865,0	1/1:77:1,76:1:36:76:2732:-242.323,-19.581,0
chr07	23908106	.	A	G	79397.6	PASS	AB=0.444396;ABP=65.0716;AC=136;AF=0.73913;AN=184;AO=3780;CIGAR=1X;DP=5080;DPB=5080;DPRA=17.0899;EPP=8211.18;EPPR=2815.07;GTI=1;LEN=1;MEANALT=1.01124;MQM=52.923;MQMR=59.642;NS=92;NUMALT=1;ODDS=0.214071;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135019;QR=46614;RO=1299;RPL=0;RPP=8211.18;RPPR=2815.07;RPR=3780;RUN=1;SAF=3780;SAP=8211.18;SAR=0;SRF=1299;SRP=2823.75;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:17,4:17:612:4:144:-6.95852,0,-49.0918	0/1:58:38,20:38:1360:20:720:-47.4071,0,-104.04	0/1:104:56,48:56:2008:48:1719:-123.163,0,-149.569	0/1:136:75,61:75:2696:61:2179:-155.132,0,-201.93	0/1:10:1,9:1:36:9:324:-26.4214,0,-0.587975	1/1:28:1,27:1:36:27:942:-80.957,-4.83057,0	0/1:48:27,21:27:968:21:737:-51.9758,0,-72.9846	1/1:102:0,102:0:0:102:3641:-326.907,-30.7051,0	1/1:46:0,46:0:0:46:1648:-148.065,-13.8474,0	0/1:67:44,23:44:1584:23:824:-53.4052,0,-122.676	1/1:27:0,27:0:0:27:972:-87.5142,-8.12781,0	0/1:45:23,22:23:828:22:780:-56.6349,0,-61.2887	0/1:38:18,20:18:648:20:716:-53.1534,0,-47.206	0/1:26:13,13:13:468:13:462:-33.9333,0,-34.6236	0/1:44:27,17:27:968:17:608:-41.7094,0,-74.1858	1/1:22:0,22:0:0:22:788:-70.9894,-6.62266,0	1/1:13:0,13:0:0:13:468:-42.3529,-3.91339,0	1/1:11:0,11:0:0:11:387:-35.0827,-3.31133,0	0/1:14:12,2:12:428:2:72:-2.60511,0,-34.6444	0/1:104:55,49:55:1980:49:1715:-122.837,0,-147.162	1/1:84:0,84:0:0:84:2972:-266.574,-25.2865,0	1/1:53:0,53:0:0:53:1893:-170.4,-15.9546,0	1/1:46:0,46:0:0:46:1646:-147.533,-13.8474,0	1/1:35:0,35:0:0:35:1256:-113.068,-10.5361,0	0/1:39:19,20:19:684:20:716:-52.4641,0,-50.1502	0/1:148:80,68:80:2868:68:2423:-173.518,0,-213.671	1/1:166:0,166:0:0:166:5917:-529.433,-49.971,0	0/1:16:10,6:10:360:6:216:-14.7395,0,-27.9278	1/1:155:2,153:2:72:153:5487:-486.492,-39.8229,0	0/1:75:44,31:44:1576:31:1112:-77.3904,0,-119.541	1/1:61:0,61:0:0:61:2184:-195.919,-18.3628,0	1/1:4:0,4:0:0:4:135:-12.4563,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.231,-1.20412,0	0/1:5:4,1:4:144:1:36:-2.08408,0,-11.8085	0/1:6:4,2:4:144:2:72:-5.01335,0,-11.504	1/1:84:0,84:0:0:84:2994:-269.377,-25.2865,0	0/1:83:49,34:49:1764:34:1209:-83.6276,0,-134.03	0/1:19:10,9:10:360:9:320:-23.3535,0,-27.0247	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:106:42,64:42:1512:64:2263:-171.305,0,-104.457	0/1:10:3,7:3:108:7:252:-19.9608,0,-7.06011	0/1:78:46,32:46:1652:32:1144:-79.5346,0,-125.48	0/1:26:13,13:13:468:13:464:-34.2133,0,-34.6329	0/1:21:8,13:8:288:13:464:-35.697,0,-19.9329	1/1:43:0,43:0:0:43:1544:-139.1,-12.9443,0	1/1:57:0,57:0:0:57:2033:-182.762,-17.1587,0	0/1:101:37,64:37:1328:64:2292:-175.745,0,-89.4159	1/1:54:0,54:0:0:54:1913:-172.173,-16.2556,0	1/1:90:0,90:0:0:90:3213:-288.897,-27.0927,0	1/1:67:0,67:0:0:67:2404:-216.208,-20.169,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0266	0/1:103:42,61:42:1500:61:2158:-162.952,0,-103.309	1/1:58:0,58:0:0:58:2088:-187.896,-17.4597,0	.:.:.:.:.:.:.:.	0/1:108:44,64:44:1569:64:2300:-173.459,0,-108.988	0/1:16:12,4:12:432:4:144:-8.47826,0,-34.4047	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:6:0,6:0:0:6:216:-19.7739,-1.80618,0	1/1:62:0,62:0:0:62:2224:-199.942,-18.6639,0	1/1:69:0,69:0:0:69:2472:-222.162,-20.7711,0	.:.:.:.:.:.:.:.	1/1:128:0,128:0:0:128:4600:-413.756,-38.5318,0	1/1:98:1,97:1:36:97:3472:-308.26,-25.9027,0	0/1:58:26,32:26:936:32:1122:-83.5818,0,-67.0951	1/1:55:0,55:0:0:55:1949:-175.148,-16.5567,0	0/1:90:49,41:49:1760:41:1476:-105.818,0,-131.459	0/1:173:130,43:130:4649:43:1540:-86.6224,0,-366.488	0/1:12:4,8:4:144:8:288:-22.589,0,-9.70126	1/1:21:0,21:0:0:21:744:-67.1156,-6.32163,0	1/1:33:0,33:0:0:33:1188:-106.835,-9.93399,0	0/1:24:13,11:13:464:11:381:-27.0531,0,-34.8728	1/1:94:0,94:0:0:94:3348:-299.817,-28.2968,0	1/1:69:0,69:0:0:69:2465:-221.281,-20.7711,0	1/1:98:0,98:0:0:98:3451:-309.576,-29.5009,0	1/1:176:0,176:0:0:176:6324:-567.738,-52.9813,0	0/1:94:78,16:78:2796:16:572:-23.3903,0,-223.425	1/1:77:0,77:0:0:77:2760:-247.771,-23.1793,0	1/1:7:0,7:0:0:7:248:-22.6112,-2.10721,0	1/1:105:1,103:1:36:103:3691:-327.073,-28.0682,0	1/1:70:0,70:0:0:70:2507:-225.132,-21.0721,0	1/1:59:0,59:0:0:59:2107:-189.155,-17.7608,0	1/1:43:0,43:0:0:43:1540:-138.56,-12.9443,0	0/1:37:25,12:25:896:12:432:-28.0275,0,-69.8199	0/1:16:6,10:6:216:10:360:-27.8598,0,-14.974	0/1:44:22,22:22:788:22:784:-57.4865,0,-57.9995	1/1:14:0,14:0:0:14:500:-45.229,-4.21442,0	1/1:21:0,21:0:0:21:756:-67.2936,-6.32163,0	1/1:30:0,30:0:0:30:1080:-97.256,-9.0309,0	0/1:22:12,10:12:432:10:360:-25.8785,0,-32.5939	0/1:35:21,14:21:756:14:500:-34.6901,0,-57.8312	0/1:31:25,6:25:896:6:216:-10.4305,0,-71.6284	1/1:77:0,77:0:0:77:2760:-247.898,-23.1793,0	1/1:33:0,33:0:0:33:1188:-107.036,-9.93399,0
chr07	23908129	.	C	T	21390.8	PASS	AB=0.549689;ABP=51.3492;AC=47;AF=0.255435;AN=184;AO=1257;CIGAR=1X;DP=5031;DPB=5031;DPRA=0.983321;EPP=2732.55;EPPR=8198.15;GTI=0;LEN=1;MEANALT=1;MQM=59.6547;MQMR=52.9637;NS=92;NUMALT=1;ODDS=1.07983;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44830;QR=134638;RO=3774;RPL=1257;RPP=2732.55;RPPR=8198.15;RPR=0;RUN=1;SAF=1257;SAP=2732.55;SAR=0;SRF=3774;SRP=8198.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:4,17:4:144:17:608:-48.7304,0,-6.95852	0/1:58:20,38:20:697:38:1338:-103.056,0,-45.3467	0/1:102:48,54:48:1728:54:1936:-143.8,0,-124.416	0/1:132:60,72:60:2140:72:2569:-191.71,0,-152.846	0/0:14:13,1:13:460:1:36:0,-0.616145,-38.0402	0/0:27:26,1:26:928:1:36:0,-4.52953,-79.715	0/1:48:21,27:21:747:27:968:-72.9846,0,-52.8686	0/0:103:103,0:103:3670:0:0:0,-31.0061,-329.53	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.136	0/1:67:24,43:24:849:43:1548:-119.442,0,-55.6286	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.4067	0/1:44:22,22:22:792:22:792:-58.3513,0,-58.0039	0/1:39:20,19:20:720:19:684:-50.1434,0,-53.2114	0/1:25:12,13:12:424:13:464:-34.5653,0,-30.8819	0/1:43:17,26:17:608:26:918:-69.9877,0,-42.0105	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.0611	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.5445	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.8923	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.60511	0/1:98:47,51:47:1668:51:1819:-134.486,0,-119.68	0/0:86:86,0:86:3062:0:0:0,-25.8886,-274.465	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.208	0/0:46:45,1:45:1593:1:36:0,-10.2517,-139.186	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.423	0/1:37:19,18:19:680:18:648:-47.5138,0,-49.8692	0/1:144:68,76:68:2444:76:2695:-199.429,0,-176.603	0/0:166:166,0:166:5939:0:0:0,-49.971,-531.206	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.7395	0/0:152:150,2:150:5379:2:72:0,-38.9198,-476.86	0/1:72:31,41:31:1108:41:1472:-111.088,0,-77.9413	0/0:59:59,0:59:2120:0:0:0,-17.7608,-189.881	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0498	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2801	0/0:4:4,0:4:125:0:0:0,-1.20412,-11.4891	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.08408	0/1:6:2,4:2:72:4:144:-11.504,0,-5.01335	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.58	0/1:82:34,48:34:1212:48:1715:-129.922,0,-84.2555	0/1:20:9,11:9:315:11:388:-29.2368,0,-22.5996	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:107:64,43:64:2268:43:1505:-103.528,0,-171.304	0/1:10:7,3:7:252:3:108:-7.06011,0,-19.9608	0/1:76:31,45:31:1103:45:1596:-121.046,0,-76.4602	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.5727	0/1:20:12,8:12:432:8:288:-20.2339,0,-33.1414	0/0:46:46,0:46:1630:0:0:0,-13.8474,-145.811	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.328	0/1:100:64,36:64:2304:36:1288:-86.1182,0,-177.07	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.461	0/0:90:90,0:90:3224:0:0:0,-27.0927,-289.884	0/0:68:68,0:68:2399:0:0:0,-20.47,-215.765	1/1:7:0,7:0:0:7:248:-22.6618,-2.10721,0	0/1:101:64,37:64:2267:37:1306:-87.2459,0,-173.315	0/0:57:57,0:57:2044:0:0:0,-17.1587,-183.991	.:.:.:.:.:.:.:.	0/1:106:65,41:65:2306:41:1453:-99.1548,0,-174.719	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.47826	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7739	0/0:65:65,0:65:2323:0:0:0,-19.5669,-208.833	0/0:69:69,0:69:2457:0:0:0,-20.7711,-220.816	.:.:.:.:.:.:.:.	0/0:128:128,0:128:4567:0:0:0,-38.5318,-410.809	0/0:96:95,1:95:3375:1:27:0,-26.1991,-300.64	0/1:56:31,25:31:1103:25:892:-63.7374,0,-82.4828	0/0:55:55,0:55:1950:0:0:0,-16.5566,-175.37	0/1:87:40,47:40:1424:47:1680:-125.295,0,-102.062	0/1:167:43,124:43:1548:124:4440:-349.492,0,-89.1431	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.589	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.9513	0/0:33:33,0:33:1188:0:0:0,-9.93399,-106.849	0/1:23:11,12:11:396:12:428:-31.9351,0,-28.7118	0/0:94:94,0:94:3361:0:0:0,-28.2968,-300.984	0/0:68:68,0:68:2436:0:0:0,-20.47,-218.684	0/0:96:96,0:96:3400:0:0:0,-28.8989,-304.895	0/0:172:172,0:172:6137:0:0:0,-51.7772,-551.012	0/1:92:16,76:16:572:76:2715:-216.776,0,-23.9924	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.153	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6112	0/0:106:105,1:105:3749:1:36:0,-28.3109,-332.552	0/0:68:68,0:68:2432:0:0:0,-20.47,-218.592	0/0:63:62,1:62:2216:1:36:0,-15.4622,-195.462	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.293	0/1:35:12,23:12:432:23:815:-63.1324,0,-28.6295	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9306	0/1:43:20,23:20:716:23:828:-61.8951,0,-51.6732	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.7775	0/0:19:19,0:19:676:0:0:0,-5.71957,-60.797	0/0:30:30,0:30:1058:0:0:0,-9.0309,-95.2915	0/1:20:11,9:11:396:9:311:-22.3013,0,-29.7192	0/1:37:16,21:16:568:21:752:-56.8681,0,-40.1924	0/1:32:7,25:7:243:25:900:-71.6881,0,-12.5455	0/0:77:77,0:77:2728:0:0:0,-23.1793,-245.095	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.103
chr07	23908135	.	T	C	77261.4	PASS	AB=0.4252;ABP=118.333;AC=137;AF=0.744565;AN=184;AO=3751;CIGAR=1X;DP=5138;DPB=5138;DPRA=17.2854;EPP=8148.2;EPPR=3008.33;GTI=1;LEN=1;MEANALT=1.03371;MQM=52.8976;MQMR=59.7319;NS=92;NUMALT=1;ODDS=0.00525347;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132739;QR=49219;RO=1384;RPL=3751;RPP=8148.2;RPPR=2209.94;RPR=0;RUN=1;SAF=3751;SAP=8148.2;SAR=0;SRF=1285;SRP=2209.94;SRR=99;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:17,4:17:599:4:135:-6.13471,0,-47.9165	0/1:61:42,19:42:1504:19:676:-42.5611,0,-117.282	0/1:106:57,49:57:2035:49:1716:-122.269,0,-151.395	0/1:132:73,59:73:2586:59:2089:-148.269,0,-193.239	1/1:13:1,12:1:36:12:417:-34.1713,-0.315115,0	1/1:26:1,25:1:36:25:896:-76.8356,-4.22851,0	0/1:46:25,21:25:900:21:724:-51.4038,0,-67.4655	1/1:103:0,103:0:0:103:3620:-325.063,-31.0061,0	1/1:48:0,48:0:0:48:1707:-153.367,-14.4494,0	0/1:66:43,23:43:1528:23:815:-52.8899,0,-117.943	1/1:27:0,27:0:0:27:934:-84.1917,-8.12781,0	0/1:44:22,22:22:783:22:769:-55.9414,0,-57.5409	0/1:39:19,20:19:684:20:712:-52.4991,0,-50.1434	0/1:26:13,13:13:468:13:449:-32.6338,0,-34.6236	0/1:44:26,17:26:915:17:594:-40.3904,0,-69.359	1/1:23:0,23:0:0:23:822:-74.0798,-6.92369,0	1/1:13:0,13:0:0:13:449:-40.6436,-3.91339,0	1/1:12:0,12:0:0:12:422:-38.2,-3.61236,0	0/1:14:12,2:12:409:2:68:-2.23124,0,-32.921	0/1:112:63,49:63:2227:49:1700:-118.982,0,-166.971	1/1:82:0,82:0:0:82:2869:-257.171,-24.6845,0	1/1:53:0,53:0:0:53:1896:-170.611,-15.9546,0	1/1:47:1,46:1:36:46:1635:-142.968,-10.5527,0	1/1:36:0,36:0:0:36:1268:-114.164,-10.8371,0	0/1:46:28,18:28:976:18:631:-42.7473,0,-74.305	0/1:147:80,67:80:2853:67:2389:-170.77,0,-212.753	1/1:169:0,169:0:0:169:5930:-530.682,-50.8741,0	0/1:16:10,6:10:351:6:216:-14.7395,0,-27.1102	1/1:156:2,154:2:72:154:5510:-488.687,-40.124,0	0/1:74:44,30:44:1584:30:1067:-73.81,0,-120.561	1/1:59:0,59:0:0:59:2095:-188.273,-17.7608,0	1/1:4:0,4:0:0:4:131:-12.0923,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	1/1:4:0,4:0:0:4:137:-12.6179,-1.20412,0	0/1:5:4,1:4:144:1:36:-2.08408,0,-11.8085	0/1:6:4,2:4:144:2:72:-5.01335,0,-11.504	1/1:83:0,83:0:0:83:2926:-263.268,-24.9855,0	0/1:91:56,35:56:1992:35:1215:-81.8647,0,-152.132	0/1:21:11,10:11:380:10:342:-24.7187,0,-28.2103	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:110:44,66:44:1576:66:2351:-177.555,0,-109.013	0/1:10:3,7:3:108:7:248:-19.6009,0,-7.06011	0/1:81:51,30:51:1820:30:1080:-72.8857,0,-139.69	0/1:26:13,13:13:468:13:459:-33.7611,0,-34.6329	0/1:21:8,13:8:288:13:447:-34.1773,0,-19.9329	1/1:46:2,44:2:72:44:1564:-133.782,-7.01066,0	1/1:55:0,55:0:0:55:1957:-175.979,-16.5567,0	0/1:106:45,61:45:1608:61:2188:-164.947,0,-113.099	1/1:54:0,54:0:0:54:1921:-172.886,-16.2556,0	1/1:86:0,86:0:0:86:3075:-276.576,-25.8886,0	1/1:66:0,66:0:0:66:2317:-208.519,-19.868,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0266	0/1:111:47,64:47:1671:64:2240:-167.864,0,-116.386	1/1:57:0,57:0:0:57:2024:-182.23,-17.1587,0	.:.:.:.:.:.:.:.	0/1:107:43,64:43:1544:64:2281:-172.237,0,-107.043	0/1:18:14,4:14:496:4:144:-7.8762,0,-39.5557	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:6:0,6:0:0:6:212:-19.4097,-1.80618,0	1/1:60:0,60:0:0:60:2137:-192.131,-18.0618,0	1/1:69:0,69:0:0:69:2449:-220.106,-20.7711,0	.:.:.:.:.:.:.:.	1/1:129:0,129:0:0:129:4587:-412.412,-38.8329,0	1/1:97:1,96:1:36:96:3392:-301.148,-25.6016,0	0/1:56:25,31:25:892:31:1084:-80.7777,0,-63.7374	1/1:55:0,55:0:0:55:1928:-173.383,-16.5567,0	0/1:92:53,39:53:1889:39:1378:-96.4199,0,-142.589	0/1:174:131,43:131:4669:43:1540:-86.3214,0,-367.987	0/1:12:4,8:4:144:8:288:-22.589,0,-9.70126	1/1:20:0,19:0:0:19:665:-59.6488,-5.71957,0	1/1:34:0,34:0:0:34:1215:-109.264,-10.235,0	0/1:24:13,11:13:468:11:396:-28.4108,0,-35.2349	1/1:93:0,93:0:0:93:3278:-293.569,-27.9958,0	1/1:68:1,67:1:36:67:2391:-210.895,-16.8718,0	1/1:93:1,92:1:36:92:3258:-287.947,-24.3975,0	1/1:172:0,171:0:0:171:6066:-544.242,-51.4761,0	0/1:125:109,16:109:3852:16:576:-14.4151,0,-309.194	1/1:75:0,75:0:0:75:2650:-237.965,-22.5773,0	1/1:7:0,7:0:0:7:243:-22.1568,-2.10721,0	1/1:107:1,106:1:36:106:3758:-333.117,-28.6119,0	1/1:69:0,69:0:0:69:2448:-219.857,-20.7711,0	1/1:60:0,60:0:0:60:2138:-191.93,-18.0618,0	1/1:43:0,43:0:0:43:1536:-138.199,-12.9443,0	0/1:36:24,12:24:838:12:432:-28.3285,0,-64.8969	0/1:14:5,9:5:180:9:320:-24.8709,0,-12.3376	0/1:43:24,19:24:856:19:680:-48.4346,0,-64.4121	1/1:14:0,14:0:0:14:504:-45.5872,-4.21442,0	1/1:20:0,20:0:0:20:696:-62.6249,-6.0206,0	1/1:30:0,30:0:0:30:1051:-94.6859,-9.0309,0	0/1:21:11,10:11:372:10:356:-25.8214,0,-27.4776	0/1:37:22,15:22:783:15:519:-35.7975,0,-59.6548	0/1:32:25,7:25:883:7:243:-12.5455,0,-70.1545	1/1:75:0,75:0:0:75:2635:-236.886,-22.5773,0	1/1:34:0,34:0:0:34:1207:-108.742,-10.235,0
chr07	23940337	.	T	C	132995	PASS	AB=0.576063;ABP=182.713;AC=140;AF=0.769231;AN=182;AO=6353;CIGAR=1X;DP=7875;DPB=7875;DPRA=0;EPP=13798.4;EPPR=3303.65;GTI=2;LEN=1;MEANALT=1.02198;MQM=59.9795;MQMR=59.9112;NS=91;NUMALT=1;ODDS=0.458166;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224140;QR=54281;RO=1520;RPL=6352;RPP=13789.7;RPPR=3303.65;RPR=1;RUN=1;SAF=6352;SAP=13789.7;SAR=1;SRF=1520;SRP=3303.65;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:19,17:19:680:17:600:-43.4921,0,-50.6875	0/1:141:51,90:51:1828:90:3189:-244.789,0,-122.356	0/1:88:39,49:39:1400:49:1720:-128.592,0,-99.8085	0/1:212:97,115:97:3452:115:4094:-304.511,0,-247.073	1/1:28:1,27:1:36:27:934:-80.773,-4.83057,0	1/1:19:0,19:0:0:19:663:-59.9935,-5.71957,0	0/1:61:23,38:23:813:38:1356:-103.978,0,-55.0904	1/1:171:0,171:0:0:171:6046:-544.244,-51.4761,0	1/1:60:0,60:0:0:60:2112:-190.348,-18.0618,0	0/1:129:60,69:60:2156:69:2460:-182.822,0,-155.474	1/1:75:0,75:0:0:75:2637:-237.575,-22.5773,0	0/1:75:30,45:30:1064:45:1531:-115.498,0,-73.4944	0/1:68:26,42:26:928:42:1469:-112.03,0,-63.3682	0/1:72:33,39:33:1180:39:1383:-103.094,0,-84.8339	0/1:60:27,33:27:968:33:1159:-86.5526,0,-69.3756	1/1:42:0,42:0:0:42:1439:-129.799,-12.6433,0	1/1:78:0,78:0:0:78:2707:-243.87,-23.4803,0	1/1:47:1,46:1:36:46:1631:-143.48,-10.5501,0	0/1:18:7,11:7:252:11:381:-29.2021,0,-17.6104	0/1:143:64,79:64:2300:79:2758:-205.411,0,-164.213	1/1:97:0,97:0:0:97:3393:-305.584,-29.1999,0	1/1:106:0,106:0:0:106:3732:-336.084,-31.9092,0	1/1:61:0,61:0:0:61:2145:-192.945,-18.3628,0	1/1:143:0,143:0:0:143:5068:-456.267,-43.0473,0	0/1:53:16,37:16:572:37:1299:-101.256,0,-35.8588	0/1:276:112,164:112:4024:164:5740:-433.642,0,-279.177	1/1:180:0,180:0:0:180:6352:-571.777,-54.1854,0	0/1:39:10,29:10:360:29:1044:-82.5346,0,-21.0041	1/1:213:0,213:0:0:213:7558:-680.268,-64.1194,0	0/1:211:68,142:68:2423:142:5044:-390.66,0,-154.878	1/1:103:0,103:0:0:103:3649:-328.613,-31.0061,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	.:.:.:.:.:.:.:.	0/1:4:1,3:1:36:3:95:-7.66009,0,-2.39415	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	.:.:.:.:.:.:.:.	1/1:168:0,168:0:0:168:5945:-535.157,-50.573,0	0/1:153:59,94:59:2094:94:3330:-253.862,0,-142.671	0/1:60:26,34:26:919:34:1173:-87.8074,0,-64.9644	.:.:.:.:.:.:.:.	0/1:110:47,63:47:1680:63:2234:-168.21,0,-118.374	0/1:26:14,12:14:504:12:417:-30.0334,0,-37.8713	0/1:120:63,57:63:2268:57:2023:-146.219,0,-168.129	0/1:72:26,46:26:927:46:1635:-125.764,0,-62.0732	0/1:57:28,29:28:1008:29:1035:-76.3044,0,-73.8776	1/1:67:0,67:0:0:67:2383:-214.728,-20.169,0	1/1:109:0,109:0:0:109:3833:-345.04,-32.8123,0	0/1:115:35,80:35:1245:80:2850:-222.119,0,-77.7343	1/1:126:0,126:0:0:126:4438:-399.595,-37.9298,0	1/1:183:0,183:0:0:183:6463:-581.762,-55.0885,0	1/1:98:0,98:0:0:98:3462:-311.793,-29.5009,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:106:41,65:41:1467:65:2292:-174.631,0,-100.416	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:92:41,51:41:1460:51:1820:-136.386,0,-104.001	0/1:36:20,16:20:708:16:559:-39.8005,0,-53.2085	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:22:0,22:0:0:22:771:-69.7103,-6.62266,0	1/1:98:0,98:0:0:98:3440:-309.814,-29.5009,0	1/1:110:0,110:0:0:110:3880:-349.395,-33.1133,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:157:0,157:0:0:157:5568:-501.247,-47.2617,0	1/1:166:2,164:2:72:164:5836:-518.52,-43.1343,0	0/1:82:15,67:15:531:67:2368:-188.692,0,-23.4374	1/1:95:0,95:0:0:95:3361:-302.704,-28.5979,0	0/1:152:54,98:54:1944:98:3463:-266.126,0,-129.21	0/1:81:51,30:51:1820:30:1074:-72.5878,0,-138.843	0/1:31:13,18:13:468:18:627:-47.4225,0,-33.1277	1/1:60:0,60:0:0:60:2106:-189.809,-18.0618,0	1/1:96:0,96:0:0:96:3356:-302.256,-28.8989,0	0/1:27:5,22:5:180:22:792:-63.4779,0,-8.42425	1/1:93:1,92:1:36:92:3257:-289.754,-24.3975,0	1/1:58:0,58:0:0:58:2048:-184.589,-17.4597,0	1/1:91:0,91:0:0:91:3212:-289.305,-27.3937,0	1/1:152:0,152:0:0:152:5365:-482.988,-45.7566,0	0/1:91:32,59:32:1144:59:2073:-159.446,0,-75.8758	1/1:128:0,128:0:0:128:4532:-408.048,-38.5318,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:92:0,92:0:0:92:3258:-293.442,-27.6948,0	1/1:105:0,105:0:0:105:3731:-335.99,-31.6082,0	1/1:153:0,153:0:0:153:5411:-487.122,-46.0576,0	1/1:81:0,81:0:0:81:2855:-257.187,-24.3834,0	0/1:46:25,21:25:887:21:724:-51.6294,0,-66.3007	0/1:90:39,51:39:1370:51:1815:-136.538,0,-96.5018	0/1:136:69,67:69:2450:67:2374:-172.977,0,-179.814	1/1:45:0,45:0:0:45:1588:-143.21,-13.5464,0	1/1:62:0,62:0:0:62:2134:-192.324,-18.6639,0	1/1:55:0,54:0:0:54:1878:-168.933,-16.2556,0	0/1:40:24,16:24:860:16:544:-37.2385,0,-65.6806	0/1:87:54,33:54:1918:33:1148:-77.4335,0,-146.706	0/1:63:38,25:38:1349:25:860:-58.7467,0,-102.743	1/1:73:0,73:0:0:73:2577:-232.179,-21.9752,0	1/1:83:0,83:0:0:83:2903:-261.502,-24.9855,0
chr07	23940359	.	C	T	23421	PASS	AB=0.424081;ABP=181.385;AC=42;AF=0.228261;AN=184;AO=1516;CIGAR=1X;DP=7867;DPB=7867;DPRA=0.982111;EPP=3294.96;EPPR=13783.2;GTI=1;LEN=1;MEANALT=1;MQM=59.9202;MQMR=59.9847;NS=92;NUMALT=1;ODDS=0.733801;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53975;QR=224821;RO=6350;RPL=1516;RPP=3294.96;RPPR=13791.9;RPR=0;RUN=1;SAF=1516;SAP=3294.96;SAR=0;SRF=6349;SRP=13783.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:14,19:14:500:19:684:-51.9517,0,-35.4022	0/1:137:86,51:86:3040:51:1828:-123.56,0,-232.589	0/1:86:47,39:47:1620:39:1388:-99.3303,0,-120.194	0/1:213:117,96:117:4166:96:3425:-244.344,0,-310.687	0/0:28:27,1:27:964:1:36:0,-4.83056,-83.4785	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8767	0/1:60:39,21:39:1378:21:748:-49.5835,0,-106.255	0/0:173:173,0:173:6123:0:0:0,-52.0782,-551.171	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.133	0/1:132:71,61:71:2527:61:2176:-156.371,0,-187.946	0/0:75:75,0:75:2627:0:0:0,-22.5772,-236.674	0/1:75:47,28:47:1650:28:1007:-68.3691,0,-126.209	0/1:68:42,26:42:1480:26:924:-63.0076,0,-113.024	0/1:72:38,34:38:1356:34:1212:-87.7122,0,-100.666	0/1:60:33,27:33:1171:27:972:-69.7361,0,-87.6349	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.096	0/0:78:78,0:78:2775:0:0:0,-23.4803,-249.991	0/0:44:43,1:43:1515:1:36:0,-9.64704,-133.044	0/1:20:11,9:11:383:9:320:-23.1218,0,-28.7826	0/1:140:78,62:78:2784:62:2188:-155.043,0,-208.657	0/0:98:98,0:98:3431:0:0:0,-29.5009,-309	0/0:106:106,0:106:3740:0:0:0,-31.9092,-336.8	0/0:61:61,0:61:2167:0:0:0,-18.3628,-195.296	0/0:142:142,0:142:5048:0:0:0,-42.7463,-454.462	0/1:52:36,16:36:1283:16:576:-36.5214,0,-100.119	0/1:275:167,108:167:5906:108:3845:-263.377,0,-448.871	0/0:183:183,0:183:6465:0:0:0,-55.0885,-581.943	0/1:38:28,10:28:1000:10:356:-20.9421,0,-78.8762	0/0:215:215,0:215:7624:0:0:0,-64.7214,-686.202	0/1:209:140,69:140:4954:69:2459:-158.649,0,-383.092	0/0:102:102,0:102:3625:0:0:0,-30.7051,-326.456	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:13:3,10:3:104:10:360:-28.8309,0,-5.78942	.:.:.:.:.:.:.:.	0/0:168:168,0:168:5944:0:0:0,-50.573,-535.071	0/1:154:93,61:93:3319:61:2184:-150.467,0,-252.57	0/1:56:31,25:31:1116:25:877:-62.3875,0,-83.894	.:.:.:.:.:.:.:.	0/1:110:62,48:62:2197:48:1705:-120.621,0,-164.881	0/1:25:11,14:11:387:14:500:-37.8104,0,-27.6402	0/1:121:57,64:57:2031:64:2275:-168.458,0,-146.637	0/1:70:44,26:44:1556:26:917:-61.7725,0,-119.26	0/1:56:29,27:29:1020:27:948:-68.7764,0,-75.2545	0/0:67:67,0:67:2376:0:0:0,-20.169,-214.099	0/0:108:108,0:108:3808:0:0:0,-32.5112,-342.43	0/1:112:77,35:77:2735:35:1237:-77.9169,0,-212.678	0/0:126:126,0:126:4466:0:0:0,-37.9298,-402.111	0/0:181:181,0:181:6433:0:0:0,-54.4864,-579.061	0/0:99:99,0:99:3492:0:0:0,-29.802,-314.49	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:109:67,42:67:2383:42:1485:-101.13,0,-181.915	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:93:54,39:54:1927:39:1396:-97.9433,0,-145.71	0/1:35:15,20:15:536:20:712:-53.8706,0,-38.0388	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:25:25,0:25:869:0:0:0,-7.52575,-78.5239	0/0:94:94,0:94:3308:0:0:0,-28.2968,-297.941	0/0:109:109,0:109:3885:0:0:0,-32.8123,-349.844	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:157:157,0:157:5565:0:0:0,-47.2617,-500.976	0/0:170:168,2:168:5997:2:72:0,-44.3384,-532.999	0/1:84:69,15:69:2452:15:540:-23.65,0,-195.649	0/0:93:93,0:93:3296:0:0:0,-27.9958,-296.859	0/1:149:96,53:96:3399:53:1893:-125.523,0,-261.271	0/1:85:34,51:34:1187:51:1804:-136.663,0,-81.5444	0/1:31:18,13:18:624:13:468:-33.1277,0,-47.1523	0/0:64:64,0:64:2274:0:0:0,-19.2659,-204.921	0/0:95:95,0:95:3338:0:0:0,-28.5978,-300.639	0/1:26:21,5:21:743:5:180:-8.72528,0,-59.3666	0/0:93:92,1:92:3248:1:36:0,-24.3975,-288.941	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.323	0/0:88:88,0:88:3110:0:0:0,-26.4906,-280.126	0/0:153:153,0:153:5361:0:0:0,-46.0576,-482.627	0/1:96:60,36:60:2119:36:1275:-86.1534,0,-162.08	0/0:126:126,0:126:4474:0:0:0,-37.9298,-402.832	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/0:91:91,0:91:3211:0:0:0,-27.3937,-289.213	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.029	0/0:153:153,0:153:5464:0:0:0,-46.0576,-491.89	0/0:82:81,0:81:2828:0:0:0,-24.3834,-254.549	0/1:46:22,24:22:784:24:860:-63.8745,0,-57.0365	0/1:87:49,38:49:1748:38:1347:-95.3399,0,-131.415	0/1:138:69,69:69:2402:69:2463:-180.382,0,-174.893	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:63:63,0:63:2222:0:0:0,-18.9649,-200.244	0/0:54:54,0:54:1911:0:0:0,-16.2556,-172.267	0/1:40:16,24:16:564:24:852:-64.9592,0,-39.0491	0/1:86:32,54:32:1122:54:1905:-145.838,0,-75.3977	0/1:63:25,38:25:876:38:1360:-103.736,0,-60.1894	0/0:73:73,0:73:2575:0:0:0,-21.9752,-231.996	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.347
chr07	23967065	.	A	G	152671	PASS	AB=0.509403;ABP=6.31818;AC=144;AF=0.765957;AN=188;AO=7285;CIGAR=1X;DP=9416;DPB=9416;DPRA=0;EPP=15822.2;EPPR=4613.05;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.4678;MQMR=40.2435;NS=94;NUMALT=1;ODDS=3.45253;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258225;QR=75597;RO=2127;RPL=0;RPP=15822.2;RPPR=4621.73;RPR=7285;RUN=1;SAF=0;SAP=15822.2;SAR=7285;SRF=1;SRP=4613.05;SRR=2126;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:24,49:24:856:49:1736:-134.532,0,-51.0206	0/1:61:30,31:30:1068:31:1108:-81.6329,0,-71.5405	0/1:161:82,79:82:2933:79:2796:-203.285,0,-200.088	0/1:230:110,120:110:3944:120:4224:-311.079,0,-275.289	1/1:79:0,79:0:0:79:2819:-253.947,-23.7814,0	1/1:29:1,28:1:36:28:996:-86.6382,-5.43085,0	0/1:43:15,28:15:532:28:1004:-77.7008,0,-34.1011	1/1:113:0,113:0:0:113:3996:-359.795,-34.0164,0	1/1:76:0,76:0:0:76:2708:-243.903,-22.8783,0	0/1:95:60,35:60:2135:35:1248:-84.0208,0,-157.817	1/1:130:2,128:2:72:128:4528:-400.614,-32.2972,0	0/1:119:54,65:54:1899:65:2308:-172.088,0,-124.694	0/1:93:53,40:53:1879:40:1428:-100.787,0,-131.16	0/1:148:79,68:79:2824:68:2403:-171.867,0,-199.875	0/1:91:51,40:51:1815:40:1418:-100.149,0,-131.854	1/1:80:0,80:0:0:80:2856:-257.226,-24.0824,0	1/1:45:0,45:0:0:45:1608:-144.993,-13.5464,0	1/1:36:0,36:0:0:36:1280:-115.353,-10.8371,0	0/1:47:27,20:27:960:20:720:-50.9618,0,-66.5851	0/1:202:104,98:104:3657:98:3449:-249.701,0,-258.448	1/1:163:0,162:0:0:162:5730:-515.325,-48.7669,0	1/1:128:0,128:0:0:128:4525:-407.18,-38.5318,0	1/1:153:2,151:2:72:151:5365:-476.215,-39.4025,0	1/1:72:0,72:0:0:72:2536:-228.395,-21.6742,0	0/1:92:22,70:22:784:70:2480:-195.702,0,-40.5237	0/1:205:71,134:71:2526:134:4761:-366.867,0,-158.783	1/1:238:1,237:1:36:237:8402:-752.425,-68.0469,0	0/1:25:15,10:15:532:10:332:-22.6744,0,-38.7568	1/1:224:0,224:0:0:224:7964:-716.676,-67.4307,0	0/1:100:47,53:47:1667:53:1873:-138.675,0,-113.943	1/1:143:0,143:0:0:143:5056:-455.01,-43.0473,0	1/1:9:0,9:0:0:9:316:-28.777,-2.70927,0	1/1:18:0,18:0:0:18:627:-56.7544,-5.41854,0	1/1:5:0,5:0:0:5:180:-16.5487,-1.50515,0	0/1:14:9,5:9:309:5:180:-11.9958,0,-22.383	0/1:16:5,11:5:180:11:388:-30.4409,0,-10.7665	1/1:196:0,196:0:0:196:6938:-624.364,-59.0019,0	0/1:172:70,102:70:2488:102:3618:-274.001,0,-161.452	0/1:85:47,38:47:1684:38:1356:-96.752,0,-117.097	0/1:6:5,1:5:180:1:27:-0.893603,0,-14.0845	0/1:102:45,57:45:1608:57:2011:-150.558,0,-107.947	0/1:42:29,13:29:1032:13:464:-29.109,0,-76.6769	0/1:132:74,58:74:2630:58:2053:-145.28,0,-184.896	0/1:63:37,26:37:1324:26:923:-64.3934,0,-97.4527	0/1:63:37,26:37:1275:26:914:-63.6098,0,-93.0193	1/1:135:0,135:0:0:135:4772:-429.376,-40.6391,0	1/1:102:0,102:0:0:102:3648:-328.454,-30.7051,0	0/1:146:81,65:81:2888:65:2304:-163.64,0,-207.619	1/1:98:0,98:0:0:98:3465:-311.06,-29.5009,0	1/1:137:0,136:0:0:136:4851:-436.173,-40.9401,0	1/1:203:0,203:0:0:203:7204:-647.782,-61.1091,0	0/1:20:9,11:9:320:11:387:-29.1167,0,-22.3441	0/1:152:84,68:84:3004:68:2400:-170.452,0,-208.846	1/1:65:1,64:1:32:64:2279:-202.223,-16.4184,0	1/1:19:0,19:0:0:19:676:-61.1395,-5.71957,0	0/1:145:76,69:76:2711:69:2464:-178.253,0,-190.661	0/1:51:24,27:24:860:27:960:-70.9642,0,-59.7742	0/1:12:3,9:3:108:9:324:-25.8648,0,-6.13359	1/1:33:0,33:0:0:33:1161:-104.794,-9.93399,0	1/1:84:0,84:0:0:84:2969:-267.389,-25.2865,0	1/1:212:0,212:0:0:212:7450:-670.245,-63.8184,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:141:1,140:1:36:140:4967:-443.47,-38.9645,0	1/1:151:4,147:4:144:147:5211:-455.935,-32.4071,0	0/1:67:30,37:30:1060:37:1304:-97.4699,0,-70.6517	1/1:86:0,86:0:0:86:3053:-274.879,-25.8886,0	0/1:148:54,94:54:1936:94:3344:-256.264,0,-124.272	0/1:194:123,71:123:4364:71:2504:-167.128,0,-322.637	0/1:74:39,35:39:1369:35:1235:-89.1502,0,-95.629	1/1:75:0,75:0:0:75:2668:-240.367,-22.5773,0	1/1:39:0,39:0:0:39:1364:-123.027,-11.7402,0	0/1:29:8,21:8:270:21:743:-58.4635,0,-15.3063	1/1:109:0,109:0:0:109:3872:-348.647,-32.8123,0	1/1:107:1,106:1:36:106:3780:-336.99,-28.8226,0	1/1:183:0,183:0:0:183:6496:-584.636,-55.0885,0	1/1:142:1,141:1:36:141:4956:-442.664,-39.2436,0	0/1:107:29,78:29:1032:78:2788:-218.792,0,-54.7186	1/1:101:1,100:1:36:100:3568:-317.851,-27.0164,0	1/1:18:0,18:0:0:18:644:-58.2872,-5.41854,0	1/1:109:0,109:0:0:109:3867:-348.007,-32.8123,0	1/1:114:0,114:0:0:114:4068:-366.268,-34.3174,0	1/1:186:0,186:0:0:186:6555:-589.495,-55.9916,0	1/1:71:0,71:0:0:71:2485:-223.873,-21.3731,0	0/1:85:37,48:37:1288:48:1692:-126.457,0,-87.2189	0/1:55:22,33:22:775:33:1163:-88.3837,0,-51.7792	0/1:134:59,75:59:2100:75:2675:-200.139,0,-142.745	1/1:23:0,23:0:0:23:812:-73.3446,-6.92369,0	1/1:95:0,95:0:0:95:3400:-306.196,-28.5979,0	1/1:97:0,97:0:0:97:3468:-312.279,-29.1999,0	0/1:105:60,45:60:2144:45:1596:-112.317,0,-153.202	0/1:217:105,111:105:3739:111:3900:-284.851,0,-256.697	0/1:86:66,20:66:2336:20:708:-38.1285,0,-177.963	1/1:130:0,130:0:0:130:4611:-415.075,-39.1339,0	1/1:105:1,104:1:36:104:3690:-328.693,-28.1055,0
chr07	23967072	.	CAATATAAATG	CAATATGAATG,CATATGAATG	197662	PASS	AB=0.51646,0.473967;ABP=13.0899,28.2228;AC=144,44;AF=0.765957,0.234043;AN=188;AO=7353,2043;CIGAR=6M1X4M,1M1D4M1X4M;DP=9480;DPB=9294.64;DPRA=0,0.980861;EPP=15969.8,4430.65;EPPR=5.18177;GTI=1;LEN=1,10;MEANALT=2.39362,2.86792;MQM=59.5911,40.2291;MQMR=60;NS=94;NUMALT=2;ODDS=4.10012;PAIRED=0,0;PAIREDR=0;PAO=6.33333,6.33333;PQA=213,213;PQR=213;PRO=6.33333;QA=260970,70675;QR=32;RO=1;RPL=0,0;RPP=15969.8,4439.33;RPPR=5.18177;RPR=7353,2043;RUN=1,1;SAF=0,1;SAP=15969.8,4430.65;SAR=7353,2042;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:76:0,52,24:0:0:52,24:1856,821:-214.624,-63.3113,-47.6578,-151.648,0,-144.423	1/2:64:0,34,29:0:0:34,29:1212,1008:-175.489,-76.6965,-66.4615,-98.7759,0,-90.046	1/2:164:0,88,76:0:0:88,76:3117,2588:-452.654,-198.905,-172.414,-254.087,0,-231.209	1/2:227:0,120,106:0:0:120,106:4259,3646:-635.174,-288.173,-252.05,-347.055,0,-315.146	1/1:80:0,80,0:0:0:80,0:2859,0:-257.545,-24.0824,0,-257.545,-24.0824,-257.545	1/1:29:0,27,1:0:0:27,1:960,32:-86.3918,-8.12781,0,-83.9454,-5.68169,-83.6444	1/2:46:0,29,17:0:0:29,17:998,572:-126.61,-45.563,-36.8331,-81.3819,0,-76.2644	1/1:117:0,117,0:0:0:117,0:4145,0:-373.191,-35.2205,0,-373.191,-35.2205,-373.191	1/1:78:0,78,0:0:0:78,0:2774,0:-249.83,-23.4803,0,-249.83,-23.4803,-249.83	1/2:96:0,38,58:0:0:38,58:1360,1976:-267.218,-156.338,-144.899,-111.227,0,-93.7671	1/1:133:0,129,0:0:0:129,0:4557,0:-409.816,-38.8329,0,-409.816,-38.8329,-409.816	1/2:115:0,59,52:0:0:59,52:2078,1782:-305.702,-136.539,-118.779,-169.175,0,-153.521	1/2:97:0,44,53:0:0:44,53:1568,1824:-267.83,-140.032,-126.786,-128.141,0,-112.186	1/2:148:0,71,77:0:0:71,77:2519,2695:-415.538,-210.343,-188.97,-205.54,0,-182.361	1/2:89:0,41,48:0:0:41,48:1462,1673:-251.634,-132.721,-120.379,-119.261,0,-104.812	1/1:82:0,81,0:0:0:81,0:2887,0:-259.678,-24.3834,0,-259.678,-24.3834,-259.678	1/1:46:0,45,0:0:0:45,0:1592,0:-143.209,-13.5464,0,-143.209,-13.5464,-143.209	1/1:35:0,34,0:0:0:34,0:1220,0:-109.605,-10.235,0,-109.605,-10.235,-109.605	1/2:48:0,19,27:0:0:19,27:680,937:-127.063,-71.5997,-65.8801,-55.5087,0,-47.3809	1/2:202:0,96,105:0:0:96,105:3429,3665:-568.361,-288.995,-260.096,-279.424,0,-247.816	1/1:165:0,163,0:0:0:163,0:5773,0:-519.081,-49.0679,0,-519.081,-49.0679,-519.081	1/1:130:0,130,0:0:0:130,0:4630,0:-416.71,-39.1339,0,-416.71,-39.1339,-416.71	1/1:158:0,155,2:0:0:155,2:5482,72:-493.053,-46.6597,0,-487.35,-40.9366,-486.748	1/1:72:0,71,0:0:0:71,0:2531,0:-227.788,-21.3731,0,-227.788,-21.3731,-227.788	1/2:92:0,66,25:0:0:66,25:2357,860:-259.612,-67.4765,-47.6085,-192.171,0,-184.645	1/2:202:0,131,69:0:0:131,69:4644,2412:-568.066,-189.749,-150.314,-378.313,0,-357.542	1/1:245:0,239,0:0:0:239,0:8541,0:-768.236,-71.9462,0,-768.236,-71.9462,-768.236	1/2:25:0,10,15:0:0:10,15:360,536:-71.4368,-42.0557,-39.0454,-29.734,0,-25.2186	1/1:224:0,223,0:0:0:223,0:7885,0:-709.209,-67.1297,0,-709.209,-67.1297,-709.209	1/2:102:0,56,43:0:0:56,43:1986,1496:-278.851,-117.106,-100.248,-161.821,0,-148.877	1/1:139:0,138,0:0:0:138,0:4899,0:-440.398,-41.5421,0,-440.398,-41.5421,-440.398	1/1:11:0,11,0:0:0:11,0:381,0:-34.616,-3.31133,0,-34.616,-3.31133,-34.616	1/1:17:0,17,0:0:0:17,0:589,0:-53.3333,-5.11751,0,-53.3333,-5.11751,-53.3333	1/1:5:0,5,0:0:0:5,0:165,0:-15.1702,-1.50515,0,-15.1702,-1.50515,-15.1702	1/2:14:0,5,9:0:0:5,9:175,315:-38.3681,-24.4124,-22.9072,-14.2946,0,-11.5854	1/2:18:0,13,5:0:0:13,5:464,176:-51.6317,-13.8157,-9.90234,-38.1556,0,-36.6504	1/1:201:0,200,0:0:0:200,0:7120,0:-640.404,-60.206,0,-640.404,-60.206,-640.404	1/2:166:0,101,65:0:0:101,65:3551,2198:-460.317,-171.309,-140.905,-289.344,0,-269.777	1/2:84:0,36,48:0:0:36,48:1284,1678:-233.595,-128.914,-118.077,-105.026,0,-90.5769	1/2:5:0,1,4:0:0:1,4:32,144:-14.1507,-11.5775,-11.2765,-2.89828,0,-1.69416	1/2:101:0,56,44:0:0:56,44:2000,1540:-283.542,-120.476,-103.618,-163.16,0,-149.914	1/2:40:0,11,27:0:0:11,27:392,925:-104.021,-72.0644,-68.7531,-31.9643,0,-23.8365	1/2:131:0,60,69:0:0:60,69:2130,2360:-356.647,-183.13,-165.068,-173.589,0,-152.817	1/2:63:0,27,35:0:0:27,35:964,1234:-176.259,-97.6617,-89.5339,-78.5923,0,-68.0563	1/2:58:0,27,30:0:0:27,30:932,1030:-157.457,-81.7348,-73.607,-75.7893,0,-66.7584	1/1:136:0,133,0:0:0:133,0:4687,0:-421.524,-40.037,0,-421.524,-40.037,-421.524	1/1:102:0,102,0:0:0:102,0:3629,0:-326.754,-30.7051,0,-326.754,-30.7051,-326.754	1/2:141:0,67,73:0:0:67,73:2391,2548:-396.343,-201.444,-181.275,-194.846,0,-172.871	1/1:100:0,100,0:0:0:100,0:3552,0:-319.498,-30.103,0,-319.498,-30.103,-319.498	1/1:141:0,140,0:0:0:140,0:4979,0:-447.763,-42.1442,0,-447.763,-42.1442,-447.763	1/1:207:0,204,0:0:0:204,0:7261,0:-653.015,-61.4101,0,-653.015,-61.4101,-653.015	1/2:20:0,11,9:0:0:11,9:396,316:-57.6348,-25.342,-22.0306,-32.6428,0,-29.9335	1/2:152:0,71,80:0:0:71,80:2510,2797:-418.443,-214.012,-192.639,-204.416,0,-180.334	1/1:64:0,63,1:0:0:63,1:2251,36:-202.476,-18.9649,0,-199.645,-15.7852,-199.343	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:143:0,68,75:0:0:68,75:241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chr07	23967123	.	A	G	33014.5	PASS	AB=0.48585;ABP=10.6918;AC=45;AF=0.239362;AN=188;AO=2159;CIGAR=1X;DP=9718;DPB=9718;DPRA=0.943123;EPP=4691.22;EPPR=16415;GTI=1;LEN=1;MEANALT=1.01852;MQM=40.0357;MQMR=59.4299;NS=94;NUMALT=1;ODDS=4.25524;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77460;QR=270251;RO=7558;RPL=2159;RPP=4691.22;RPPR=16415;RPR=0;RUN=1;SAF=0;SAP=4691.22;SAR=2159;SRF=0;SRP=16415;SRR=7558;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:52,25:52:1849:25:896:-52.9421,0,-143.491	0/1:68:35,33:35:1252:33:1188:-78.667,0,-92.4798	0/1:174:90,84:90:3191:84:3004:-202.594,0,-234.859	0/1:233:121,112:121:4333:112:4012:-280.14,0,-319.973	0/0:83:83,0:83:2973:0:0:0,-24.9855,-267.798	0/0:31:30,1:30:1068:1:36:0,-6.0329,-93.1017	0/1:46:30,16:30:1064:16:572:-36.1801,0,-82.1935	0/0:119:119,0:119:4226:0:0:0,-35.8226,-380.48	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.528	0/1:97:37,60:37:1332:60:2156:-158.77,0,-90.9763	0/0:136:136,0:136:4875:0:0:0,-40.9401,-438.342	0/1:122:65,57:65:2303:57:2052:-135.989,0,-170.748	0/1:93:43,50:43:1548:50:1792:-123.205,0,-111.58	0/1:153:71,82:71:2526:82:2931:-206.498,0,-181.485	0/1:86:41,45:41:1476:45:1620:-115.83,0,-106.875	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.378	0/0:48:48,0:48:1698:0:0:0,-14.4494,-153.084	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.899	0/1:47:20,27:20:716:27:972:-67.0221,0,-50.6013	0/1:207:97,110:97:3480:110:3956:-282.05,0,-250.892	0/0:172:172,0:172:6180:0:0:0,-51.7772,-556.006	0/0:131:131,0:131:4688:0:0:0,-39.4349,-421.841	0/0:156:154,2:154:5532:2:72:0,-40.3055,-491.22	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.882	0/1:97:72,25:72:2588:25:900:-48.9152,0,-203.852	0/1:207:132,75:132:4736:75:2692:-172.294,0,-364.026	0/0:245:245,0:245:8781:0:0:0,-73.7523,-789.637	0/1:25:10,15:10:360:15:536:-39.0757,0,-25.2186	0/0:232:232,0:232:8293:0:0:0,-69.839,-746.242	0/1:104:57,47:57:2037:47:1684:-113.079,0,-152.202	0/0:146:146,0:146:5232:0:0:0,-43.9504,-470.304	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2578	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:5:4,1:4:144:1:36:-2.08942,0,-11.8085	0/1:14:5,9:5:180:9:320:-23.3044,0,-11.9958	0/1:19:14,5:14:500:5:180:-9.86339,0,-39.5881	0/0:202:202,0:202:7226:0:0:0,-60.8081,-650.282	0/1:177:107,70:107:3806:70:2500:-160.934,0,-289.406	0/1:87:38,49:38:1364:49:1760:-122.954,0,-96.8702	0/1:6:1,5:1:36:5:180:-14.0845,0,-1.79209	0/1:104:57,47:57:2048:47:1692:-114.438,0,-153.28	0/1:40:13,27:13:468:27:968:-71.1472,0,-30.0732	0/1:137:63,74:63:2253:74:2648:-185.473,0,-161.734	0/1:66:28,38:28:1008:38:1359:-99.5109,0,-71.1399	0/1:63:27,36:27:968:36:1296:-94.3312,0,-68.4725	0/0:136:136,0:136:4869:0:0:0,-40.9401,-438.026	0/0:105:105,0:105:3757:0:0:0,-31.6081,-338.25	0/1:148:67,81:67:2400:81:2902:-207.998,0,-171.668	0/0:104:104,0:104:3736:0:0:0,-31.3071,-335.419	0/0:143:143,0:143:5109:0:0:0,-43.0473,-459.74	0/0:207:207,0:207:7417:0:0:0,-62.3132,-666.938	0/1:20:11,9:11:396:9:324:-22.6576,0,-29.9335	0/1:157:72,85:72:2584:85:3060:-211.621,0,-185.498	0/0:64:63,1:63:2264:1:36:0,-15.7852,-200.513	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8779	0/1:151:70,81:70:2485:81:2904:-204.913,0,-178.384	0/1:50:27,23:27:964:23:828:-57.158,0,-71.6212	0/1:13:9,4:9:324:4:144:-8.74824,0,-25.5638	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.106	0/0:90:90,0:90:3221:0:0:0,-27.0927,-290.038	0/0:218:218,0:218:7771:0:0:0,-65.6245,-698.897	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:140:138,2:138:4933:2:72:0,-35.7537,-437.516	0/0:156:153,3:153:5469:3:108:0,-37.1531,-482.347	0/1:71:41,30:41:1468:30:1080:-70.8854,0,-110.975	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.711	0/1:151:94,57:94:3380:57:2052:-133.242,0,-258.591	0/1:193:72,120:72:2588:120:4304:-317.21,0,-174.765	0/1:71:33,38:33:1184:38:1360:-96.1846,0,-85.4681	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.529	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.506	0/1:30:22,8:22:784:8:288:-16.4948,0,-61.853	0/0:113:113,0:113:4033:0:0:0,-34.0164,-363.133	0/0:118:117,1:117:4170:1:36:0,-32.1339,-372.068	0/0:190:190,0:190:6738:0:0:0,-57.1957,-606.304	0/0:149:148,1:148:5293:1:36:0,-41.3508,-472.972	0/1:113:84,29:84:2993:29:1040:-53.4981,0,-235.514	0/0:104:103,1:103:3655:1:36:0,-27.9195,-325.684	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6485	0/0:113:113,0:113:4049:0:0:0,-34.0164,-364.407	0/0:117:117,0:117:4143:0:0:0,-35.2205,-373.004	0/0:190:190,0:190:6816:0:0:0,-57.1957,-612.985	0/0:73:73,0:73:2609:0:0:0,-21.9752,-235.026	0/1:88:48,40:48:1716:40:1436:-98.6339,0,-128.204	0/1:57:35,22:35:1252:22:788:-52.154,0,-95.7484	0/1:136:76,60:76:2728:60:2152:-145.982,0,-204.749	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9184	0/0:98:98,0:98:3490:0:0:0,-29.5009,-314.29	0/0:96:96,0:96:3437:0:0:0,-28.8989,-309.485	0/1:107:48,59:48:1728:59:2124:-150.545,0,-123.59	0/1:219:111,108:111:3973:108:3864:-264.83,0,-291.764	0/1:88:20,68:20:701:68:2440:-186.048,0,-36.9202	0/0:154:154,0:154:5509:0:0:0,-46.3586,-495.671	0/0:108:107,1:107:3832:1:36:0,-29.0085,-341.447
chr07	23969127	.	C	T	120069	PASS	AB=0.505972;ABP=4.02188;AC=139;AF=0.747312;AN=186;AO=5628;CIGAR=1X;DP=7261;DPB=7261;DPRA=14.4855;EPP=12224.1;EPPR=3540.34;GTI=1;LEN=1;MEANALT=1.04396;MQM=59.8978;MQMR=59.9853;NS=93;NUMALT=1;ODDS=1.56914;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201726;QR=58067;RO=1629;RPL=5628;RPP=12224.1;RPPR=3540.34;RPR=0;RUN=1;SAF=0;SAP=12224.1;SAR=5628;SRF=0;SRP=3540.34;SRR=1629;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:90:43,47:43:1517:47:1684:-124.754,0,-109.728	0/1:51:25,26:25:888:26:932:-68.8463,0,-64.8865	0/1:157:63,94:63:2248:94:3380:-257.153,0,-155.322	0/1:210:110,100:110:3892:100:3572:-258.466,0,-287.26	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	1/1:51:0,51:0:0:51:1813:-163.45,-15.3525,0	0/1:125:69,56:69:2452:56:2004:-142.898,0,-183.293	1/1:95:0,95:0:0:95:3400:-306.213,-28.5979,0	1/1:128:2,126:2:72:126:4520:-400.049,-31.6951,0	0/1:92:34,58:34:1195:58:2076:-159.416,0,-80.1598	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:78:32,46:32:1143:46:1656:-125.843,0,-79.6984	0/1:55:29,26:29:1032:26:932:-67.6422,0,-76.6368	0/1:36:24,12:24:856:12:432:-28.3841,0,-66.524	0/1:67:29,38:29:1044:38:1368:-103.252,0,-74.1058	1/1:41:0,41:0:0:41:1476:-133.1,-12.3422,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:18:5,13:5:180:13:468:-37.0407,0,-11.1335	0/1:161:79,82:79:2832:82:2948:-217.087,0,-206.653	1/1:106:0,106:0:0:106:3800:-342.166,-31.9092,0	1/1:96:0,96:0:0:96:3440:-309.813,-28.8989,0	1/1:105:0,105:0:0:105:3772:-339.678,-31.6082,0	1/1:38:0,38:0:0:38:1356:-122.336,-11.4391,0	0/1:108:56,52:56:2008:52:1856:-134.783,0,-148.482	0/1:220:100,120:100:3560:120:4316:-322.382,0,-254.383	1/1:262:0,262:0:0:262:9414:-846.81,-78.8699,0	0/1:30:15,15:15:532:15:540:-39.9056,0,-39.1822	1/1:233:0,233:0:0:233:8312:-748.028,-70.14,0	0/1:78:44,34:44:1568:34:1224:-86.9867,0,-117.931	1/1:79:0,79:0:0:79:2824:-254.399,-23.7814,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	1/1:148:0,148:0:0:148:5296:-476.775,-44.5524,0	0/1:74:42,32:42:1512:32:1140:-80.633,0,-114.098	0/1:38:24,14:24:852:14:504:-34.259,0,-65.5612	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:164:75,88:75:2696:88:3146:-233.934,0,-193.456	0/1:26:16,10:16:576:10:360:-24.9175,0,-44.3482	0/1:115:70,45:70:2504:45:1599:-109.543,0,-190.994	0/1:43:22,21:22:788:21:756:-55.4229,0,-58.3005	0/1:57:38,19:38:1360:19:684:-44.7316,0,-105.542	1/1:116:0,116:0:0:116:4149:-373.592,-34.9195,0	1/1:120:1,119:1:32:119:4260:-380.379,-32.9243,0	0/1:176:74,100:74:2631:100:3577:-269.397,0,-184.299	1/1:82:0,82:0:0:82:2936:-264.461,-24.6845,0	1/1:106:0,106:0:0:106:3804:-342.557,-31.9092,0	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:97:44,53:44:1580:53:1904:-142.438,0,-113.291	1/1:41:1,40:1:36:40:1440:-126.299,-8.74396,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:47:24,23:24:864:23:824:-60.3303,0,-63.9342	0/1:66:39,27:39:1388:27:967:-67.2513,0,-105.345	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:64:0,63:0:0:63:2242:-201.679,-18.9649,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	.:.:.:.:.:.:.:.	1/1:133:2,131:2:72:131:4697:-416.052,-33.2003,0	1/1:158:1,157:1:36:157:5610:-501.083,-43.9645,0	0/1:57:14,43:14:496:43:1548:-122.426,0,-27.8156	1/1:129:0,129:0:0:129:4628:-416.682,-38.8329,0	0/1:70:33,37:33:1180:37:1323:-98.2999,0,-85.4359	0/1:91:56,35:56:2004:35:1256:-85.9516,0,-153.24	0/1:28:19,9:19:672:9:324:-21.077,0,-52.378	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:94:0,94:0:0:94:3353:-301.828,-28.2968,0	1/1:103:0,103:0:0:103:3692:-332.457,-31.0061,0	1/1:97:0,97:0:0:97:3480:-313.406,-29.1999,0	1/1:151:0,151:0:0:151:5428:-488.633,-45.4555,0	0/1:177:91,86:91:3225:86:3084:-224.348,0,-237.19	1/1:55:0,55:0:0:55:1976:-178.097,-16.5567,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:143:0,143:0:0:143:5144:-463.097,-43.0473,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:104:0,104:0:0:104:3724:-335.361,-31.3071,0	1/1:44:1,43:1:36:43:1531:-134.482,-9.64705,0	0/1:82:36,46:36:1272:46:1648:-123.924,0,-90.0984	0/1:46:18,28:18:636:28:1008:-77.189,0,-43.7207	0/1:97:53,44:53:1904:44:1580:-113.292,0,-142.438	1/1:16:0,16:0:0:16:571:-51.7042,-4.81648,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:34:12,22:12:432:22:792:-61.3707,0,-28.9862	0/1:63:35,28:35:1232:28:1004:-71.711,0,-92.2192	1/1:107:0,107:0:0:107:3814:-343.441,-32.2102,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0
chr07	24046375	.	ATCT	GTCC,GTCT	219793	PASS	AB=0.473365,0.519489;ABP=31.4661,18.2454;AC=144,44;AF=0.765957,0.234043;AN=188;AO=7724,2410;CIGAR=1X2M1X,1X3M;DP=10193;DPB=10198.8;DPRA=0,1.01597;EPP=16138.9,5021.36;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=2.11702,2.66;MQM=59.9569,59.9884;MQMR=60;NS=94;NUMALT=2;ODDS=3.89813;PAIRED=0,0;PAIREDR=0;PAO=11.5,11.5;PQA=401,401;PQR=0;PRO=0;QA=270752,86190;QR=35;RO=1;RPL=7650,2386;RPP=16138.9,5029.87;RPPR=5.18177;RPR=74,24;RUN=1,1;SAF=0,1;SAP=16775.5,5227.58;SAR=7724,2409;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:66:0,32,34:0:0:32,34:1085,1209:-186.674,-98.7052,-89.0723,-88.1429,0,-77.9079	1/2:198:0,93,104:0:0:93,104:3266,3721:-569.256,-303.442,-275.447,-265.828,0,-234.521	1/2:144:0,73,71:0:0:73,71:2550,2544:-415.26,-207.838,-185.862,-207.776,0,-186.403	1/2:238:0,106,131:0:0:106,131:3672,4700:-681.791,-383.364,-351.455,-298.419,0,-258.984	1/1:58:0,58,0:0:0:58,0:2020,0:-182.011,-17.4597,0,-182.011,-17.4597,-182.011	1/1:69:0,69,0:0:0:69,0:2439,0:-219.707,-20.7711,0,-219.707,-20.7711,-219.707	1/2:170:0,69,99:0:0:69,99:2385,3545:-482.925,-289.141,-268.369,-193.829,0,-164.027	1/1:237:0,236,0:0:0:236,0:8141,0:-732.264,-71.0431,0,-732.264,-71.0431,-732.264	1/1:99:0,95,3:0:0:95,3:3312,108:-297.948,-28.5979,0,-289.136,-19.7633,-288.233	1/2:134:0,57,77:0:0:57,77:1997,2747:-386.678,-224.207,-207.048,-162.824,0,-139.645	1/1:38:0,38,0:0:0:38,0:1350,0:-121.8,-11.4391,0,-121.8,-11.4391,-121.8	1/2:59:0,32,27:0:0:32,27:1103,972:-169.257,-79.6701,-70.0371,-89.9396,0,-81.8118	1/2:69:0,33,36:0:0:33,36:1179,1296:-202.232,-106.107,-96.1729,-96.484,0,-85.6469	1/2:60:1,27,32:1:35:27,32:953,1148:-168.098,-90.7984,-85.518,-74.7587,0,-67.9734	1/2:53:0,19,34:0:0:19,34:682,1220:-155.503,-99.8718,-94.1522,-55.9903,0,-45.7553	1/1:49:0,49,0:0:0:49,0:1716,0:-154.723,-14.7505,0,-154.723,-14.7505,-154.723	1/1:52:0,51,0:0:0:51,0:1809,0:-162.791,-15.3525,0,-162.791,-15.3525,-162.791	1/1:45:0,45,0:0:0:45,0:1583,0:-142.443,-13.5464,0,-142.443,-13.5464,-142.443	1/2:29:0,16,13:0:0:16,13:554,464:-83.201,-38.1841,-33.3676,-45.3689,0,-41.4555	1/2:308:0,136,169:0:0:136,169:4818,6043:-885.223,-492.739,-451.799,-392.48,0,-341.605	1/1:149:0,149,0:0:0:149,0:5173,0:-465.72,-44.8535,0,-465.72,-44.8535,-465.72	1/1:129:0,127,0:0:0:127,0:4417,0:-397.379,-38.2308,0,-397.379,-38.2308,-397.379	1/1:94:0,93,0:0:0:93,0:3269,0:-294.132,-27.9958,0,-294.132,-27.9958,-294.132	1/1:133:0,133,0:0:0:133,0:4618,0:-415.671,-40.037,0,-415.671,-40.037,-415.671	1/2:89:0,49,40:0:0:49,40:1712,1428:-255.798,-116.542,-101.791,-139.377,0,-127.336	1/2:347:0,182,161:0:0:182,161:6413,5748:-990.439,-468.681,-413.893,-521.821,0,-473.355	1/1:179:0,178,0:0:0:178,0:6245,0:-561.824,-53.5833,0,-561.824,-53.5833,-561.824	1/2:34:0,22,12:0:0:22,12:770,424:-97.5296,-34.8841,-28.2614,-62.9976,0,-59.3852	1/1:357:0,354,0:0:0:354,0:12462,0:-1121.06,-106.565,0,-1121.06,-106.565,-1121.06	1/2:132:0,72,59:0:0:72,59:2498,2093:-373.573,-170.528,-148.853,-203.046,0,-185.286	1/1:175:0,175,0:0:0:175,0:6152,0:-553.785,-52.6803,0,-553.785,-52.6803,-553.785	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:30:0,29,0:0:0:29,0:1018,0:-91.5818,-8.72987,0,-91.5818,-8.72987,-91.5818	1/1:2:0,2,0:0:0:2,0:66,0:-6.26795,-0.60206,0,-6.26795,-0.60206,-6.26795	1/2:10:0,2,8:0:0:2,8:72,275:-28.5533,-22.6752,-22.0732,-6.23466,0,-3.82642	1/2:12:0,7,5:0:0:7,5:250,180:-35.4278,-15.0469,-12.9397,-20.7395,0,-19.2344	1/1:206:0,206,0:0:0:206,0:7204,0:-648.431,-62.0122,0,-648.431,-62.0122,-648.431	1/2:269:0,120,148:0:0:120,148:4250,5316:-779.933,-433.729,-397.606,-346.269,0,-301.717	1/2:43:0,16,26:0:0:16,26:572,932:-122.759,-76.1181,-71.3016,-46.7408,0,-38.9141	1/2:2:0,1,1:0:0:1,1:36,36:-6.20457,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:162:0,72,90:0:0:72,90:2550,3232:-471.669,-263.949,-242.275,-208.018,0,-180.925	1/2:37:0,21,16:0:0:21,16:730,576:-106.702,-47.3585,-41.0369,-59.6977,0,-54.8812	1/2:194:0,102,90:0:0:102,90:3562,3220:-552.091,-262.364,-231.659,-289.517,0,-262.425	1/2:71:0,30,40:0:0:30,40:1018,1415:-197.72,-115.304,-106.273,-82.4592,0,-70.418	1/2:55:0,22,32:0:0:22,32:779,1152:-157.461,-94.0072,-87.3845,-63.4599,0,-53.8269	1/1:119:0,117,0:0:0:117,0:4105,0:-369.279,-35.2205,0,-369.279,-35.2205,-369.279	1/1:139:0,139,0:0:0:139,0:4867,0:-438.132,-41.8432,0,-438.132,-41.8432,-438.132	1/2:242:0,126,113:0:0:126,113:4435,4039:-690.301,-329.328,-291.398,-360.975,0,-326.958	1/1:135:0,135,0:0:0:135,0:4719,0:-424.877,-40.6391,0,-424.877,-40.6391,-424.877	1/1:134:0,134,0:0:0:134,0:4683,0:-421.636,-40.338,0,-421.636,-40.338,-421.636	1/1:183:0,182,0:0:0:182,0:6423,0:-577.807,-54.7875,0,-577.807,-54.7875,-577.807	1/2:19:0,7,11:0:0:7,11:251,392:-52.5451,-32.0682,-29.961,-20.5846,0,-17.2733	1/2:177:0,95,82:0:0:95,82:3358,2917:-511.566,-238.08,-209.482,-273.84,0,-249.156	1/1:45:0,45,0:0:0:45,0:1573,0:-141.857,-13.5464,0,-141.857,-13.5464,-141.857	1/1:14:0,14,0:0:0:14,0:469,0:-42.5293,-4.21442,0,-42.5293,-4.21442,-42.5293	1/2:134:0,74,57:0:0:74,57:2552,2048:-374.386,-167.082,-1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chr07	24079295	.	C	A	11554.2	PASS	AB=0.461296;ABP=23.6851;AC=47;AF=0.252688;AN=186;AO=738;CIGAR=1X;DP=4188;DPB=4188;DPRA=0.822988;EPP=1596.88;EPPR=7451.2;GTI=5;LEN=1;MEANALT=1.04255;MQM=59.3604;MQMR=48.1608;NS=93;NUMALT=1;ODDS=0.996857;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26314;QR=122996;RO=3446;RPL=1;RPP=1596.88;RPPR=7451.2;RPR=737;RUN=1;SAF=0;SAP=1605.56;SAR=738;SRF=0;SRP=7485.9;SRR=3446;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:16,10:16:572:10:359:-24.7895,0,-43.2501	0/1:36:21,15:21:752:15:540:-38.076,0,-56.1124	0/1:40:28,12:28:1008:12:428:-26.8167,0,-75.4362	0/1:44:18,26:18:644:26:932:-70.9374,0,-44.2597	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.8041	0/0:19:19,0:19:684:0:0:0,-5.71957,-60.1152	0/1:50:20,29:20:712:29:1044:-78.931,0,-48.9943	0/0:73:73,0:73:2628:0:0:0,-21.9752,-233.357	0/0:67:67,0:67:2400:0:0:0,-20.169,-212.204	0/1:31:16,15:16:572:15:540:-39.5908,0,-41.9447	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.141	0/1:33:15,18:15:532:18:639:-47.8576,0,-37.6304	0/1:27:11,16:11:396:16:572:-43.6781,0,-27.4026	0/1:58:30,28:30:1076:28:1004:-73.1868,0,-78.5078	0/1:25:12,13:12:432:13:468:-34.9201,0,-31.5147	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.2762	0/0:37:37,0:37:1307:0:0:0,-11.1381,-115.907	0/0:23:23,0:23:807:0:0:0,-6.92369,-72.0358	0/1:16:11,5:11:383:5:176:-11.3685,0,-29.555	0/1:51:27,24:27:972:24:851:-61.5487,0,-71.71	0/0:71:71,0:71:2544:0:0:0,-21.3731,-226.187	0/0:81:81,0:81:2888:0:0:0,-24.3834,-259.273	0/0:69:68,1:68:2448:1:36:0,-17.1728,-215.061	0/0:68:68,0:68:2425:0:0:0,-20.47,-216.276	0/1:33:17,16:17:608:16:576:-42.241,0,-44.6019	0/1:188:110,78:110:3944:78:2777:-193.568,0,-296.657	0/0:126:126,0:126:4495:0:0:0,-37.9298,-400.554	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.5056	0/0:74:74,0:74:2645:0:0:0,-22.2762,-237.609	0/1:65:41,24:41:1472:24:856:-57.7648,0,-111.999	0/0:252:251,1:251:8996:1:36:0,-72.2613,-799.028	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.993	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1803	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.38663	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.94646	0/0:87:87,0:87:3083:0:0:0,-26.1896,-276.516	0/1:78:49,29:49:1764:29:1040:-70.3772,0,-134.201	0/1:20:6,14:6:216:14:483:-37.7312,0,-13.4962	1/1:1:0,1:0:0:1:36:-3.59783,-0.30103,0	0/1:34:19,15:19:684:15:536:-38.2533,0,-50.7975	0/1:15:7,8:7:252:8:288:-21.7457,0,-18.3121	0/1:43:28,15:28:1004:15:532:-35.2688,0,-76.5519	0/1:38:22,16:22:792:16:572:-40.3743,0,-59.8323	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.6506	0/0:131:130,0:130:4615:0:0:0,-39.1339,-412.993	0/0:32:32,0:32:1152:0:0:0,-9.63296,-102.552	0/1:98:60,38:60:2143:38:1364:-93.5048,0,-162.58	0/0:45:45,0:45:1584:0:0:0,-13.5463,-142.237	0/0:45:45,0:45:1592:0:0:0,-13.5463,-142.527	0/0:99:99,0:99:3533:0:0:0,-29.802,-316.861	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.60367	0/1:31:13,18:13:464:18:648:-49.319,0,-32.18	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5322	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5168	0/1:20:8,12:8:288:12:432:-33.2006,0,-19.9419	0/1:19:9,10:9:324:10:334:-24.6606,0,-23.6614	.:.:.:.:.:.:.:.	0/0:17:17,0:17:597:0:0:0,-5.11751,-53.6298	0/0:53:53,0:53:1891:0:0:0,-15.9546,-168.974	0/0:55:55,0:55:1939:0:0:0,-16.5566,-174.007	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.7521	0/0:70:70,0:70:2499:0:0:0,-21.0721,-224.264	0/0:120:120,0:120:4304:0:0:0,-36.1236,-383.87	0/1:37:16,21:16:568:21:756:-57.1547,0,-39.8913	0/0:21:21,0:21:741:0:0:0,-6.32163,-65.7636	0/1:73:38,35:38:1364:35:1260:-91.6891,0,-100.098	0/1:54:25,28:25:896:28:1004:-74.3269,0,-63.961	0/1:9:5,4:5:165:4:136:-9.86627,0,-12.3476	0/0:40:39,0:39:1392:0:0:0,-11.7402,-122.746	0/0:72:72,0:72:2553:0:0:0,-21.6742,-227.989	0/1:5:2,3:2:72:3:93:-7.17158,0,-5.30264	0/0:60:60,0:60:2140:0:0:0,-18.0618,-188.439	0/0:19:19,0:19:684:0:0:0,-5.71957,-60.5624	0/0:156:156,0:156:5562:0:0:0,-46.9607,-494.984	0/0:45:45,0:45:1600:0:0:0,-13.5463,-142.758	0/1:30:21,9:21:756:9:320:-20.1115,0,-58.3246	0/0:29:29,0:29:1040:0:0:0,-8.72987,-92.1086	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.1767	0/0:22:22,0:22:783:0:0:0,-6.62266,-69.831	0/0:47:47,0:47:1673:0:0:0,-14.1484,-147.598	0/0:88:88,0:88:3135:0:0:0,-26.4906,-280.534	0/0:50:50,0:50:1765:0:0:0,-15.0515,-158.226	0/1:18:9,9:9:324:9:324:-24.0869,0,-23.6741	0/1:26:9,17:9:324:17:604:-46.8441,0,-21.5394	0/1:64:27,37:27:959:37:1320:-99.8085,0,-66.7757	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.0063	0/0:34:34,0:34:1216:0:0:0,-10.235,-108.143	0/0:34:34,0:34:1207:0:0:0,-10.235,-107.05	0/1:27:18,9:18:648:9:324:-21.378,0,-49.9781	0/1:44:34,10:34:1180:10:356:-19.1359,0,-92.0609	0/1:37:13,24:13:464:24:818:-62.7885,0,-30.788	0/0:18:18,0:18:648:0:0:0,-5.41854,-57.8433	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.1648
chr07	24126866	.	C	T	38672.1	PASS	AB=0.488669;ABP=8.42332;AC=45;AF=0.241935;AN=186;AO=2386;CIGAR=1X;DP=10522;DPB=10522;DPRA=1.0825;EPP=5166.79;EPPR=17540;GTI=2;LEN=1;MEANALT=1.08772;MQM=59.9732;MQMR=59.9966;NS=93;NUMALT=1;ODDS=1.90089;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83978;QR=290027;RO=8128;RPL=2384;RPP=5166.79;RPPR=17548.7;RPR=2;RUN=1;SAF=2386;SAP=5184.14;SAR=0;SRF=8127;SRP=17644.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:20,22:20:720:22:772:-57.158,0,-52.4855	0/1:189:101,88:101:3611:88:3135:-225.482,0,-268.301	0/1:164:92,72:92:3277:72:2513:-177.052,0,-245.78	0/1:281:161,120:161:5760:120:4243:-297.464,0,-433.927	0/0:95:93,2:93:3314:2:68:0,-22.1401,-292.021	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.668	0/1:157:65,91:65:2309:91:3215:-242.402,0,-160.896	0/0:183:183,0:183:6515:0:0:0,-55.0885,-586.427	0/0:138:137,1:137:4903:1:32:0,-38.3428,-438.222	0/1:171:89,82:89:3176:82:2894:-209.217,0,-234.589	0/0:64:64,0:64:2268:0:0:0,-19.2659,-204.376	0/1:61:22,39:22:792:39:1352:-103.612,0,-53.2428	0/1:98:51,47:51:1832:47:1663:-120.456,0,-135.66	0/1:86:42,43:42:1508:43:1532:-112.226,0,-110.067	0/1:87:38,49:38:1355:49:1724:-129.253,0,-96.0601	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.636	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.914	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.622	0/1:44:17,27:17:590:27:952:-72.7499,0,-40.1788	0/1:118:53,65:53:1892:65:2289:-170.749,0,-135.037	0/0:172:172,0:172:6168:0:0:0,-51.7772,-555.217	0/0:60:60,0:60:2116:0:0:0,-18.0618,-190.707	0/0:86:85,1:85:3043:1:36:0,-22.2903,-270.501	0/0:181:180,1:180:6429:1:36:0,-50.8882,-575.099	0/1:56:27,29:27:953:29:1032:-76.3358,0,-69.2256	0/1:391:187,204:187:6712:204:7227:-532.789,0,-486.45	0/0:168:168,0:168:6007:0:0:0,-50.573,-540.735	0/1:39:24,15:24:860:15:531:-36.3817,0,-65.9817	0/0:310:309,1:309:10994:1:36:0,-89.721,-985.761	0/1:147:88,58:88:3147:58:2056:-141.126,0,-239.273	0/0:153:153,0:153:5463:0:0:0,-46.0576,-491.799	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:14:6,8:6:216:8:276:-20.9608,0,-15.5761	0/0:169:169,0:169:6043:0:0:0,-50.8741,-543.971	0/1:193:102,91:102:3642:91:3183:-228.595,0,-269.885	0/1:77:35,42:35:1252:42:1462:-108.691,0,-89.8058	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:209:119,90:119:4242:90:3139:-219.815,0,-319.045	0/1:29:15,14:15:531:14:495:-36.1532,0,-39.392	0/1:115:73,41:73:2620:41:1450:-96.1173,0,-201.37	0/1:72:38,34:38:1341:34:1177:-84.5553,0,-99.3139	0/1:75:39,36:39:1360:36:1241:-89.412,0,-100.117	0/0:115:114,1:114:4088:1:36:0,-31.0202,-364.507	0/0:131:131,0:131:4688:0:0:0,-39.4349,-422.081	0/1:252:135,117:135:4830:117:4124:-295.488,0,-358.994	0/0:96:95,1:95:3388:1:36:0,-25.3006,-301.535	0/0:157:157,0:157:5606:0:0:0,-47.2617,-504.662	0/0:162:160,1:160:5740:1:36:0,-45.1525,-513.191	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:163:96,67:96:3440:67:2343:-162.063,0,-260.745	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:176:95,81:95:3399:81:2820:-200.929,0,-253.143	0/1:64:32,32:32:1148:32:1111:-81.0303,0,-84.3639	.:.:.:.:.:.:.:.	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:90:90,0:90:3202:0:0:0,-27.0927,-288.403	0/0:113:111,2:111:3948:2:72:0,-27.1797,-348.678	0/1:7:6,1:6:203:1:36:-1.49107,0,-16.494	0/0:207:207,0:207:7369:0:0:0,-62.3132,-663.259	0/0:257:256,1:256:9110:1:36:0,-73.7664,-816.28	0/1:100:50,50:50:1792:50:1776:-130.02,0,-131.459	0/0:146:146,0:146:5215:0:0:0,-43.9504,-469.489	0/1:213:118,95:118:4213:95:3344:-237.06,0,-315.23	0/1:95:30,65:30:1076:65:2279:-176.773,0,-68.555	0/1:38:12,26:12:419:26:932:-72.7597,0,-26.6035	0/0:124:124,0:124:4412:0:0:0,-37.3277,-397.252	0/1:97:48,49:48:1716:49:1733:-127.053,0,-125.526	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.0815	0/0:93:93,0:93:3285:0:0:0,-27.9958,-295.868	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/0:269:266,0:266:9494:0:0:0,-80.074,-854.108	0/0:222:222,0:222:7935:0:0:0,-66.8287,-714.175	0/1:147:73,74:73:2608:74:2631:-192.786,0,-190.717	0/0:140:140,0:140:4990:0:0:0,-42.1442,-449.249	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:164:164,0:164:5833:0:0:0,-49.3689,-525.083	0/0:110:109,1:109:3899:1:36:0,-29.515,-347.505	0/0:312:312,0:312:11105:0:0:0,-93.9214,-999.344	0/0:115:115,0:115:4088:0:0:0,-34.6184,-368.106	0/1:87:47,40:47:1692:40:1383:-98.5734,0,-126.377	0/1:76:36,40:36:1288:40:1400:-103.416,0,-93.3453	0/1:161:78,83:78:2770:83:2903:-213.038,0,-201.075	0/0:49:49,0:49:1734:0:0:0,-14.7505,-156.343	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.443	0/1:46:20,26:20:720:26:923:-69.5394,0,-51.2814	0/1:93:54,39:54:1925:39:1365:-95.1484,0,-145.529	0/1:76:19,57:19:684:57:2006:-157.934,0,-39.012	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.622	0/0:128:127,1:127:4525:1:36:0,-34.9336,-403.817
chr07	24126916	.	T	C	40508.9	PASS	AB=0.4862;ABP=11.281;AC=47;AF=0.25;AN=188;AO=2446;CIGAR=1X;DP=11179;DPB=11179;DPRA=0.965501;EPP=5314.43;EPPR=18864.5;GTI=1;LEN=1;MEANALT=1.05357;MQM=59.9489;MQMR=59.9629;NS=94;NUMALT=1;ODDS=4.79745;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87328;QR=313175;RO=8730;RPL=2446;RPP=5314.43;RPPR=18916.6;RPR=0;RUN=1;SAF=0;SAP=5314.43;SAR=2446;SRF=6;SRP=18907.9;SRR=8724;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:16,13:16:572:13:453:-32.3698,0,-43.0836	0/1:139:75,64:75:2700:64:2287:-164.245,0,-201.4	0/1:120:65,55:65:2340:55:1972:-141.631,0,-174.735	0/1:278:159,119:159:5724:119:4256:-299.533,0,-431.535	0/0:115:115,0:115:4140:0:0:0,-34.6184,-372.781	0/0:119:119,0:119:4265:0:0:0,-35.8226,-384.026	0/1:258:123,134:123:4401:134:4800:-354.431,0,-318.508	0/0:190:189,1:189:6777:1:36:0,-53.5974,-606.398	0/0:157:157,0:157:5648:0:0:0,-47.2617,-508.433	0/1:166:97,69:97:3472:69:2458:-171.504,0,-262.721	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:79:40,39:40:1440:39:1392:-101.794,0,-106.116	0/1:81:42,38:42:1512:38:1356:-97.8976,0,-111.932	0/1:65:37,28:37:1332:28:997:-70.4071,0,-100.615	0/1:76:45,31:45:1620:31:1112:-77.5131,0,-123.212	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.188	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:50:29,20:29:1044:20:716:-49.7907,0,-79.2997	0/1:356:192,164:192:6893:164:5865:-420.791,0,-513.267	0/0:192:191,1:191:6837:1:31:0,-54.6983,-612.156	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.466	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.234	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.339	0/1:111:54,57:54:1932:57:2039:-150.367,0,-140.742	0/1:376:201,175:201:7190:175:6239:-448.381,0,-533.964	0/0:305:305,0:305:10945:0:0:0,-91.8141,-984.941	0/1:40:21,19:21:756:19:684:-49.8491,0,-56.326	0/0:484:484,0:484:17361:0:0:0,-145.699,-1562.02	0/1:117:70,47:70:2516:47:1672:-115.533,0,-191.471	0/0:130:127,3:127:4560:3:104:0,-29.4311,-400.862	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/1:16:9,7:9:309:7:252:-18.2125,0,-23.3242	0/0:211:210,1:210:7536:1:31:0,-60.4179,-675.176	0/1:175:89,86:89:3196:86:3078:-224.566,0,-235.053	0/1:73:39,34:39:1404:34:1216:-87.7714,0,-104.684	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:219:107,112:107:3837:112:4012:-295.343,0,-279.598	0/1:35:20,15:20:720:15:517:-36.3153,0,-54.5927	0/1:141:71,70:71:2533:70:2504:-183.145,0,-185.775	0/1:80:48,32:48:1728:32:1148:-79.5474,0,-131.723	0/1:66:39,27:39:1396:27:968:-67.5694,0,-106.071	0/0:174:174,0:174:6256:0:0:0,-52.3792,-563.131	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.778	0/1:209:93,116:93:3325:116:4145:-310.318,0,-236.551	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.47	0/0:162:161,1:161:5784:1:36:0,-45.1686,-517.074	0/0:204:203,1:203:7304:1:36:0,-57.8118,-653.806	0/1:25:18,7:18:648:7:252:-15.5032,0,-51.1261	0/1:135:69,66:69:2484:66:2364:-172.379,0,-183.174	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:147:77,70:77:2768:70:2484:-179.532,0,-204.98	0/1:75:46,29:46:1656:29:1032:-70.6162,0,-126.743	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2403	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:107:107,0:107:3833:0:0:0,-32.2102,-345.16	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/0:215:215,0:215:7682:0:0:0,-64.7214,-690.923	0/0:195:194,1:194:6972:1:36:0,-55.1026,-623.937	0/1:94:52,42:52:1868:42:1488:-105.916,0,-140.098	0/0:100:100,0:100:3581:0:0:0,-30.103,-322.491	0/1:244:127,117:127:4560:117:4173:-302.3,0,-337.109	0/1:171:41,130:41:1453:130:4656:-367.723,0,-79.5878	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.821	0/1:71:33,38:33:1188:38:1347:-100.156,0,-85.8555	0/1:29:16,13:16:576:13:457:-32.7328,0,-43.4451	0/0:125:125,0:125:4465:0:0:0,-37.6287,-402.019	0/0:78:78,0:78:2793:0:0:0,-23.4803,-251.608	0/0:219:219,0:219:7819:0:0:0,-65.9256,-703.605	0/0:197:197,0:197:7073:0:0:0,-59.3029,-636.623	0/1:109:49,60:49:1745:60:2156:-161.495,0,-124.52	0/0:107:106,1:106:3804:1:36:0,-28.6119,-338.955	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:150:150,0:150:5372:0:0:0,-45.1545,-483.607	0/0:162:162,0:162:5816:0:0:0,-48.7669,-523.551	0/0:339:339,0:339:12138:0:0:0,-102.049,-1092.23	0/0:104:104,0:104:3744:0:0:0,-31.3071,-337.158	0/1:67:27,40:27:972:40:1420:-107.928,0,-67.5839	0/1:93:47,46:47:1692:46:1638:-119.713,0,-124.571	0/1:141:66,75:66:2372:75:2674:-198.46,0,-171.292	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:66:65,1:65:2340:1:36:0,-16.2697,-207.261	0/1:36:20,16:20:716:16:572:-40.9763,0,-53.926	0/1:72:35,37:35:1256:37:1315:-96.9769,0,-91.6711	0/1:68:33,35:33:1188:35:1240:-91.4321,0,-86.7586	0/0:160:160,0:160:5721:0:0:0,-48.1648,-515.006	0/0:105:104,1:104:3732:1:36:0,-28.0099,-332.482
chr07	24126920	.	C	T	186325	PASS	AB=0.511874;ABP=9.14684;AC=141;AF=0.75;AN=188;AO=8732;CIGAR=1X;DP=11195;DPB=11195;DPRA=40.1147;EPP=18912.2;EPPR=5340.49;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9556;MQMR=59.9463;NS=94;NUMALT=1;ODDS=5.01515;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=311985;QR=87444;RO=2458;RPL=8732;RPP=18964.3;RPPR=5340.49;RPR=0;RUN=1;SAF=6;SAP=18912.2;SAR=8726;SRF=0;SRP=5340.49;SRR=2458;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:14,15:14:489:15:524:-38.7598,0,-35.609	0/1:137:63,74:63:2234:74:2664:-198.764,0,-160.076	0/1:121:57,64:57:2052:64:2296:-170.476,0,-148.527	0/1:279:118,161:118:4244:161:5741:-432.77,0,-298.15	1/1:114:0,114:0:0:114:4080:-367.386,-34.3174,0	1/1:119:0,119:0:0:119:4222:-380.16,-35.8226,0	0/1:258:138,120:138:4884:120:4272:-306.966,0,-362.045	1/1:189:1,188:1:32:188:6709:-600.684,-53.6954,0	1/1:158:1,157:1:21:157:5601:-502.109,-45.4628,0	0/1:168:70,98:70:2471:98:3508:-265.357,0,-172.067	1/1:40:0,39:0:0:39:1392:-125.219,-11.7402,0	0/1:79:39,40:39:1389:40:1420:-104.316,0,-101.522	0/1:80:36,44:36:1288:44:1567:-117.237,0,-92.1396	0/1:65:27,38:27:949:38:1368:-103.854,0,-65.1465	0/1:76:31,45:31:1112:45:1616:-122.852,0,-77.5131	1/1:57:0,57:0:0:57:2044:-184.23,-17.1587,0	1/1:49:0,49:0:0:49:1760:-158.683,-14.7505,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:50:20,29:20:701:29:1036:-78.5789,0,-48.4351	0/1:357:165,192:165:5898:192:6868:-510.72,0,-423.457	1/1:196:0,196:0:0:196:6969:-627.141,-59.0019,0	1/1:94:0,94:0:0:94:3376:-304.05,-28.2968,0	1/1:135:0,135:0:0:135:4836:-435.394,-40.6391,0	1/1:115:0,115:0:0:115:4097:-368.911,-34.6185,0	0/1:109:55,54:55:1961:54:1910:-139.362,0,-143.951	0/1:373:172,201:172:6128:201:7169:-532.983,0,-439.301	1/1:303:0,303:0:0:303:10842:-975.679,-91.2121,0	0/1:43:21,22:21:741:22:776:-57.2127,0,-54.0673	1/1:487:1,486:1:36:486:17342:-1556.73,-143.003,0	0/1:117:47,70:47:1669:70:2503:-190.302,0,-115.275	1/1:130:3,127:3:104:127:4537:-398.793,-29.4311,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:20:0,20:0:0:20:701:-63.4126,-6.0206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	1/1:211:0,211:0:0:211:7549:-679.448,-63.5173,0	0/1:174:85,88:85:3033:88:3156:-231.756,0,-220.82	0/1:75:34,41:34:1193:41:1472:-110.199,0,-85.0959	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:220:112,108:112:3993:108:3880:-283.167,0,-293.333	0/1:34:15,19:15:528:19:684:-51.6553,0,-37.613	0/1:142:71,71:71:2548:71:2537:-185.833,0,-186.802	0/1:83:34,49:34:1215:49:1756:-133.33,0,-84.6703	0/1:69:30,39:30:1060:39:1388:-104.448,0,-74.9402	1/1:173:0,173:0:0:173:6178:-556.116,-52.0782,0	1/1:117:0,117:0:0:117:4185:-376.83,-35.2205,0	0/1:207:115,92:115:4074:92:3285:-233.555,0,-304.531	1/1:134:0,134:0:0:134:4793:-431.524,-40.338,0	1/1:162:1,161:1:36:161:5773:-516.085,-45.1686,0	1/1:205:1,204:1:36:204:7285:-652.103,-58.1129,0	0/1:25:7,18:7:252:18:629:-49.408,0,-15.5032	0/1:137:68,69:68:2429:69:2480:-182.212,0,-177.623	1/1:100:0,100:0:0:100:3592:-323.486,-30.103,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:146:68,78:68:2394:78:2792:-207.44,0,-171.76	0/1:75:28,47:28:1004:47:1676:-128.548,0,-68.0986	0/1:11:6,5:6:216:5:180:-13.2403,0,-16.4792	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:111:0,111:0:0:111:3951:-355.783,-33.4143,0	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	1/1:216:0,216:0:0:216:7709:-693.354,-65.0225,0	1/1:195:1,194:1:36:194:6940:-621.066,-55.1026,0	0/1:94:41,52:41:1472:52:1860:-139.427,0,-104.528	1/1:100:0,100:0:0:100:3584:-322.765,-30.103,0	0/1:246:119,127:119:4230:127:4530:-333.807,0,-306.826	0/1:171:130,41:130:4640:41:1464:-80.5799,0,-366.284	0/1:31:18,13:18:633:13:468:-33.1277,0,-47.9631	1/1:113:0,113:0:0:113:4056:-365.226,-34.0164,0	0/1:75:42,33:42:1485:33:1173:-83.2983,0,-111.365	0/1:30:14,16:14:474:16:557:-41.4247,0,-33.9488	1/1:126:0,126:0:0:126:4489:-404.179,-37.9298,0	1/1:80:0,80:0:0:80:2853:-257.007,-24.0824,0	1/1:220:0,220:0:0:220:7860:-707.424,-66.2266,0	1/1:198:0,198:0:0:198:7093:-638.424,-59.6039,0	0/1:109:60,49:60:2137:49:1760:-125.872,0,-159.784	1/1:108:1,107:1:36:107:3808:-339.319,-28.913,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:147:0,147:0:0:147:5227:-470.567,-44.2514,0	1/1:164:0,164:0:0:164:5880:-529.309,-49.3689,0	1/1:338:1,337:1:36:337:11993:-1075.24,-98.1499,0	1/1:103:0,103:0:0:103:3696:-332.842,-31.0061,0	0/1:67:40,27:40:1436:27:968:-67.2234,0,-109.369	0/1:91:46,45:46:1640:45:1620:-118.696,0,-120.495	0/1:140:75,64:75:2680:64:2270:-162.454,0,-199.341	1/1:55:0,55:0:0:55:1972:-177.754,-16.5567,0	1/1:60:0,60:0:0:60:2141:-192.956,-18.0618,0	1/1:65:0,65:0:0:65:2313:-208.429,-19.567,0	0/1:35:15,20:15:532:20:709:-53.5983,0,-37.677	0/1:74:39,35:39:1377:35:1252:-90.7089,0,-101.95	0/1:69:36,33:36:1254:33:1184:-86.0972,0,-92.387	1/1:158:1,157:1:36:157:5625:-502.77,-43.9645,0	1/1:104:1,103:1:36:103:3684:-328.165,-27.7088,0
chr07	24139629	.	CAT	CAC	68646.6	PASS	AB=0.559691;ABP=47.0802;AC=142;AF=0.763441;AN=186;AO=3169;CIGAR=2M1X;DP=3812;DPB=3813;DPRA=41.4239;EPP=6884.41;EPPR=1364.52;GTI=7;LEN=1;MEANALT=1.11957;MQM=59.9849;MQMR=60;NS=93;NUMALT=1;ODDS=1.69046;PAIRED=0;PAIREDR=0;PAO=1;PQA=36;PQR=0;PRO=0;QA=113499;QR=22107;RO=627;RPL=0;RPP=6884.41;RPPR=1364.52;RPR=3169;RUN=1;SAF=3169;SAP=6884.41;SAR=0;SRF=627;SRP=1364.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:204:5:180:-13.2407,0,-15.3817	0/1:24:11,13:11:388:13:468:-35.2349,0,-28.0321	0/1:63:30,33:30:1049:33:1186:-88.0837,0,-75.7539	0/1:109:49,60:49:1725:60:2156:-161.495,0,-122.721	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:40:23,17:23:815:17:612:-43.3722,0,-61.6298	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:53:21,32:21:742:32:1148:-87.6752,0,-51.1485	1/1:19:0,18:0:0:18:648:-58.3109,-5.41854,0	0/1:37:14,23:14:484:23:828:-63.706,0,-32.7502	0/1:46:25,21:25:853:21:756:-54.5198,0,-63.2333	0/1:24:8,15:8:283:15:536:-41.3663,0,-18.6007	0/1:31:15,16:15:532:16:576:-42.8431,0,-38.8806	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:27:0,27:0:0:27:968:-87.2363,-8.12781,0	0/1:9:3,6:3:96:6:216:-17.0812,0,-6.24811	0/1:77:28,49:28:1006:49:1750:-134.605,0,-67.6769	1/1:100:0,100:0:0:100:3580:-322.352,-30.103,0	1/1:27:0,25:0:0:25:896:-80.6006,-7.52575,0	1/1:53:2,51:2:72:51:1828:-157.963,-9.11787,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:6:4,2:4:134:2:72:-5.03054,0,-10.5844	0/1:70:30,40:30:1062:40:1432:-108.105,0,-74.8192	1/1:65:0,64:0:0:64:2281:-205.19,-19.2659,0	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	1/1:115:0,115:0:0:115:4120:-370.984,-34.6185,0	0/1:49:16,33:16:574:33:1180:-91.7576,0,-37.2438	1/1:50:0,50:0:0:50:1784:-160.84,-15.0515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	0/1:7:5,2:5:166:2:72:-4.72951,0,-13.1597	1/1:96:0,95:0:0:95:3411:-306.899,-28.5979,0	0/1:45:25,20:25:883:20:716:-51.2214,0,-66.2417	0/1:18:7,11:7:248:11:396:-30.5642,0,-17.2459	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:56:19,34:19:671:34:1220:-93.7925,0,-44.4025	0/1:23:11,12:11:392:12:432:-32.2975,0,-28.6966	0/1:42:15,27:15:532:27:963:-74.2918,0,-35.521	0/1:32:14,18:14:502:18:648:-49.0189,0,-35.8843	0/1:24:13,11:13:466:11:396:-28.758,0,-35.054	1/1:25:0,22:0:0:22:788:-70.891,-6.62266,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:64:18,46:18:637:46:1648:-129.343,0,-38.3918	1/1:30:0,30:0:0:30:1061:-95.7994,-9.0309,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:61:20,41:20:697:41:1472:-114.413,0,-44.6892	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:283:0,283:0:0:283:10129:-911.54,-85.1915,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:25:11,14:11:396:14:496:-37.4485,0,-28.457	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:45:16,29:16:549:29:1040:-80.368,0,-36.1859	0/1:46:24,22:24:850:22:788:-57.3974,0,-62.9729	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:23:13,10:13:464:10:360:-25.8206,0,-35.174	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:41:0,40:0:0:40:1436:-129.256,-12.0412,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:175:0,175:0:0:175:6256:-563.136,-52.6803,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:142:1,141:1:34:141:5037:-450.076,-39.3473,0	1/1:24:0,23:0:0:23:820:-73.7628,-6.92369,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:59:0,59:0:0:59:2119:-190.979,-17.7608,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:33:19,14:19:666:14:500:-35.4022,0,-50.3307	0/1:20:14,6:14:484:6:216:-13.7699,0,-37.867	0/1:50:23,27:23:818:27:963:-71.9344,0,-58.8902	1/1:12:0,11:0:0:11:392:-35.2605,-3.31133,0	1/1:41:1,40:1:33:40:1432:-125.878,-9.0431,0	1/1:32:0,32:0:0:32:1143:-103.18,-9.63296,0	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:29:12,16:12:424:16:568:-42.7387,0,-29.7814	0/1:39:23,16:23:808:16:576:-40.4348,0,-61.2994	1/1:172:0,172:0:0:172:6152:-553.78,-51.7772,0	1/1:59:0,59:0:0:59:2095:-188.819,-17.7608,0
chr07	24161951	.	T	A	22712.4	PASS	AB=0.472252;ABP=21.689;AC=45;AF=0.239362;AN=188;AO=1324;CIGAR=1X;DP=5859;DPB=5859;DPRA=1.01595;EPP=2549.27;EPPR=9664.66;GTI=0;LEN=1;MEANALT=1.02083;MQM=58.5967;MQMR=56.9406;NS=94;NUMALT=1;ODDS=0.394521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46991;QR=162365;RO=4529;RPL=1286;RPP=2557.45;RPPR=9673.27;RPR=38;RUN=1;SAF=1323;SAP=2869.36;SAR=1;SRF=4528;SRP=9828.92;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:36,17:36:1292:17:589:-37.3795,0,-100.288	0/1:47:23,24:23:828:24:854:-63.0135,0,-60.513	0/1:106:75,31:75:2682:31:1085:-66.0158,0,-209.615	0/1:111:62,49:62:2223:49:1748:-124.14,0,-166.45	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.8428	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.125	0/1:46:19,27:19:667:27:945:-71.5006,0,-46.4712	0/0:117:117,0:117:4191:0:0:0,-35.2205,-376.145	0/0:92:90,2:90:3221:2:68:0,-21.2371,-283.402	0/1:62:24,38:24:864:38:1332:-101.496,0,-59.3288	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.553	0/1:68:30,38:30:1061:38:1335:-99.9709,0,-75.283	0/1:80:43,37:43:1548:37:1328:-95.7114,0,-115.328	0/1:36:25,11:25:896:11:396:-24.9144,0,-70.0378	0/1:66:40,26:40:1440:26:932:-64.313,0,-109.726	0/0:51:51,0:51:1836:0:0:0,-15.3525,-164.762	0/0:24:23,0:23:828:0:0:0,-6.92369,-74.4587	0/0:30:30,0:30:1076:0:0:0,-9.0309,-96.8141	0/1:18:8,10:8:288:10:352:-26.5788,0,-20.8426	0/1:78:49,29:49:1760:29:1036:-70.0039,0,-135.03	0/0:78:78,0:78:2788:0:0:0,-23.4803,-250.505	0/0:78:78,0:78:2800:0:0:0,-23.4803,-251.851	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.016	0/0:16:15,1:15:536:1:36:0,-1.2182,-44.8888	0/1:70:34,36:34:1220:36:1277:-93.6147,0,-88.4655	0/1:125:63,62:63:2260:62:2201:-160.263,0,-165.747	0/0:162:162,0:162:5811:0:0:0,-48.7669,-520.915	0/1:36:18,18:18:648:18:644:-47.4491,0,-47.7664	0/0:123:123,0:123:4399:0:0:0,-37.0267,-395.965	0/1:110:62,48:62:2232:48:1716:-121.56,0,-167.035	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.557	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.41864	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.025	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1375	0/0:177:177,0:177:6359:0:0:0,-53.2823,-571.283	0/1:99:47,52:47:1688:52:1836:-134.757,0,-122.192	0/1:40:16,24:16:576:24:844:-64.2377,0,-40.1167	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7881	0/1:57:21,36:21:752:36:1265:-96.9384,0,-50.7942	0/1:30:11,19:11:381:19:676:-52.1347,0,-25.5754	0/1:65:37,28:37:1311:28:989:-69.5885,0,-98.4663	0/1:48:27,21:27:956:21:756:-53.9106,0,-71.8034	0/1:50:30,20:30:1080:20:711:-49.254,0,-82.162	0/0:95:95,0:95:3394:0:0:0,-28.5978,-304.697	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.34	0/1:110:56,54:56:1993:54:1936:-140.995,0,-146.246	0/0:57:57,0:57:2043:0:0:0,-17.1587,-182.758	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.021	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1087	0/1:7:3,4:3:108:4:144:-11.2055,0,-7.96796	0/1:227:122,103:122:4384:103:3684:-263.587,0,-325.695	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.601	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5505	0/1:74:47,27:47:1692:27:944:-62.9875,0,-129.239	0/1:15:4,11:4:144:11:383:-30.1712,0,-8.77929	0/1:8:5,3:5:180:3:108:-7.66533,0,-14.1438	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3105	0/0:75:75,0:75:2696:0:0:0,-22.5772,-241.581	0/0:106:106,0:106:3791:0:0:0,-31.9092,-340.099	0/1:3:2,1:2:72:1:36:-2.63303,0,-5.93363	0/0:99:99,0:99:3544:0:0:0,-29.802,-318.976	0/0:114:112,2:112:4016:2:68:0,-27.9733,-354.698	0/1:62:37,25:37:1324:25:900:-62.5628,0,-100.587	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.38	0/1:102:57,45:57:2048:45:1605:-113.964,0,-153.612	0/1:100:41,59:41:1472:59:2067:-156.163,0,-102.316	0/1:23:12,11:12:428:11:392:-28.6943,0,-31.8888	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0671	0/1:48:30,18:30:1080:18:644:-43.8241,0,-83.0187	0/1:12:9,3:9:324:3:93:-5.06395,0,-25.8935	0/0:73:73,0:73:2620:0:0:0,-21.9752,-235.194	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.237	0/0:77:77,0:77:2772:0:0:0,-23.1793,-248.235	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.854	0/1:69:36,33:36:1296:33:1158:-83.6823,0,-95.9674	0/0:53:53,0:53:1900:0:0:0,-15.9546,-170.891	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0736	0/0:91:91,0:91:3255:0:0:0,-27.3937,-291.331	0/0:76:73,0:73:2620:0:0:0,-21.9752,-235.141	0/0:149:149,0:149:5337:0:0:0,-44.8535,-479.73	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.245	0/1:64:36,28:36:1296:28:992:-70.3163,0,-97.5712	0/1:47:22,25:22:792:25:894:-66.5063,0,-57.0459	0/1:129:67,62:67:2384:62:2213:-160.505,0,-175.657	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.4131	0/0:78:78,0:78:2784:0:0:0,-23.4803,-249.697	0/0:63:63,0:63:2268:0:0:0,-18.9649,-203.655	0/1:35:14,21:14:504:21:748:-57.1025,0,-35.1461	0/1:91:39,52:39:1396:52:1847:-139.101,0,-98.01	0/1:56:27,29:27:968:29:1040:-77.0423,0,-70.5244	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.394	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.315
chr07	24169899	.	T	C	39164.4	PASS	AB=0.451817;ABP=111.195;AC=48;AF=0.255319;AN=188;AO=2447;CIGAR=1X;DP=12347;DPB=12347;DPRA=0.997963;EPP=5255.98;EPPR=21437.7;GTI=5;LEN=1;MEANALT=1;MQM=59.9783;MQMR=59.9914;NS=94;NUMALT=1;ODDS=4.46387;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86655;QR=353697;RO=9899;RPL=2438;RPP=5238.72;RPPR=21429;RPR=9;RUN=1;SAF=2445;SAP=5299.25;SAR=2;SRF=9898;SRP=21489.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:29,20:29:1040:20:693:-47.94,0,-79.1639	0/1:173:95,78:95:3404:78:2791:-199.352,0,-254.496	0/1:167:89,78:89:3187:78:2792:-201.248,0,-236.781	0/1:367:204,163:204:7273:163:5792:-410.889,0,-544.146	0/0:135:135,0:135:4827:0:0:0,-40.639,-434.585	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.082	0/1:202:151,51:151:5387:51:1815:-102.822,0,-424.155	0/0:212:212,0:212:7553:0:0:0,-63.8184,-679.813	0/0:142:140,2:140:4997:2:72:0,-35.9095,-443.041	0/1:91:48,43:48:1701:43:1538:-111.319,0,-125.98	0/0:78:78,0:78:2780:0:0:0,-23.4803,-250.439	0/1:91:44,47:44:1568:47:1607:-117.516,0,-114.018	0/1:72:37,35:37:1313:35:1196:-86.2625,0,-96.7955	0/1:72:37,35:37:1310:35:1219:-88.3357,0,-96.5259	0/1:55:31,24:31:1107:24:841:-59.4497,0,-83.3835	0/0:60:60,0:60:2130:0:0:0,-18.0618,-191.861	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/0:72:72,0:72:2562:0:0:0,-21.6742,-230.829	0/1:43:24,19:24:860:19:642:-45.1498,0,-64.7775	0/1:305:149,156:149:5331:156:5573:-409.874,0,-388.109	0/0:208:207,1:207:7423:1:36:0,-59.016,-664.515	0/0:95:94,1:94:3338:1:36:0,-24.9996,-297.04	0/0:133:133,0:133:4737:0:0:0,-40.037,-426.489	0/0:130:130,0:130:4672:0:0:0,-39.1339,-420.639	0/1:118:61,57:61:2176:57:2020:-146.549,0,-160.585	0/1:389:199,190:199:7110:190:6755:-490.926,0,-522.859	0/0:165:164,1:164:5857:1:36:0,-46.0717,-523.643	0/1:39:23,16:23:809:16:558:-38.8063,0,-61.3881	0/0:413:412,1:412:14762:1:36:0,-120.727,-1324.71	0/1:194:116,78:116:4135:78:2788:-192.761,0,-313.935	0/0:185:184,1:184:6584:1:36:0,-52.0923,-589.043	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:286:285,0:285:10193:0:0:0,-85.7935,-916.936	0/1:306:161,145:161:5780:145:5166:-372.964,0,-428.197	0/1:60:32,28:32:1129:28:984:-70.8089,0,-83.8545	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:216:114,102:114:4066:102:3594:-258.646,0,-301.104	0/1:37:23,14:23:828:14:492:-33.4737,0,-63.706	0/1:251:144,107:144:5139:107:3811:-267.627,0,-387.094	0/1:89:54,35:54:1931:35:1209:-82.3164,0,-147.274	0/1:81:44,37:44:1565:37:1305:-93.3657,0,-116.529	0/0:174:174,0:174:6227:0:0:0,-52.3792,-560.525	0/0:123:123,0:123:4404:0:0:0,-37.0267,-396.533	0/1:238:124,114:124:4422:114:4016:-289.987,0,-326.507	0/0:200:200,0:200:7140:0:0:0,-60.206,-642.658	0/0:205:204,1:204:7276:1:36:0,-58.1129,-651.292	0/0:294:294,0:294:10544:0:0:0,-88.5028,-948.871	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:183:100,83:100:3588:83:2959:-211.455,0,-268.038	0/0:106:106,0:106:3752:0:0:0,-31.9092,-337.879	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:206:117,89:117:4183:89:3149:-221.624,0,-314.64	0/1:90:44,46:44:1576:46:1643:-121.065,0,-115.039	0/1:8:2,6:2:72:6:207:-16.5587,0,-4.42848	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:69:69,0:69:2475:0:0:0,-20.7711,-223.003	0/0:160:158,2:158:5630:2:68:0,-41.7071,-500.362	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:261:261,0:261:9332:0:0:0,-78.5688,-839.844	0/0:262:260,2:260:9283:2:72:0,-72.0331,-828.601	0/1:59:30,29:30:1068:29:1027:-74.9814,0,-78.6713	0/0:136:136,0:136:4844:0:0:0,-40.9401,-436.114	0/1:200:93,107:93:3297:107:3815:-283.342,0,-236.707	0/1:74:31,43:31:1108:43:1532:-115.897,0,-77.7548	0/1:24:17,7:17:603:7:252:-15.8042,0,-47.3748	0/0:109:109,0:109:3899:0:0:0,-32.8123,-351.103	0/1:100:54,46:54:1940:46:1629:-116.794,0,-144.773	0/1:23:17,6:17:608:6:216:-12.8668,0,-48.1283	0/0:279:279,0:279:9976:0:0:0,-83.9874,-897.777	0/0:91:91,0:91:3248:0:0:0,-27.3937,-292.542	0/0:277:277,0:277:9874:0:0:0,-83.3853,-888.602	0/0:192:192,0:192:6887:0:0:0,-57.7978,-619.896	0/1:144:90,54:90:3224:54:1917:-129.456,0,-247.034	0/0:128:128,0:128:4555:0:0:0,-38.5318,-410.116	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:143:141,2:141:5047:2:72:0,-36.2106,-447.538	0/0:159:159,0:159:5657:0:0:0,-47.8638,-509.25	0/0:370:370,0:370:13245:0:0:0,-111.381,-1191.85	0/0:179:179,0:179:6405:0:0:0,-53.8844,-576.537	0/1:86:48,38:48:1701:38:1330:-94.1071,0,-127.485	0/1:104:60,44:60:2138:44:1525:-106.23,0,-161.38	0/1:173:100,73:100:3587:73:2582:-180.549,0,-270.957	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:136:136,0:136:4875:0:0:0,-40.9401,-438.901	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/1:43:26,17:26:936:17:591:-40.571,0,-71.6152	0/1:62:39,23:39:1400:23:801:-53.7439,0,-107.635	0/1:62:24,38:24:856:38:1351:-103.226,0,-58.6972	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.894	0/0:130:129,1:129:4599:1:36:0,-35.5356,-410.475
chr07	24169963	.	C	A	99677.7	PASS	AB=0.416336;ABP=324.574;AC=132;AF=0.702128;AN=188;AO=7499;CIGAR=1X;DP=14505;DPB=14505;DPRA=0;EPP=16286.9;EPPR=14941.4;GTI=14;LEN=1;MEANALT=1.18085;MQM=28.6962;MQMR=39.579;NS=94;NUMALT=1;ODDS=1.53724;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268926;QR=249044;RO=6983;RPL=7499;RPP=16286.9;RPPR=14941.4;RPR=0;RUN=1;SAF=0;SAP=16286.9;SAR=7499;SRF=0;SRP=15166.4;SRR=6983;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:6,5:6:216:5:180:-8.45872,0,-15.2393	0/1:144:78,66:78:2788:66:2372:-108.677,0,-190.691	0/1:77:24,53:24:860:53:1872:-98.264,0,-48.8061	0/1:272:127,145:127:4535:145:5199:-294.433,0,-314.931	1/1:74:0,73:0:0:73:2628:-178.642,-21.9752,0	1/1:47:0,47:0:0:47:1688:-108.594,-14.1484,0	0/1:89:37,52:37:1328:52:1868:-109.094,0,-89.7573	1/1:185:0,185:0:0:185:6643:-424.973,-55.6906,0	1/1:83:0,83:0:0:83:2976:-191.073,-24.9855,0	0/1:57:34,23:34:1216:23:828:-43.2188,0,-89.6115	1/1:103:0,102:0:0:102:3660:-263.286,-30.7051,0	0/1:92:47,45:47:1667:45:1620:-76.3419,0,-112.627	0/1:84:36,48:36:1283:48:1728:-85.3384,0,-82.5567	0/1:96:43,53:43:1519:53:1895:-101.076,0,-99.1409	0/1:64:23,41:23:824:41:1476:-88.2733,0,-53.4235	1/1:124:0,124:0:0:124:4452:-304.788,-37.3277,0	1/1:92:0,92:0:0:92:3308:-212.134,-27.6948,0	1/1:70:0,70:0:0:70:2516:-161.717,-21.0721,0	0/1:213:161,52:161:5740:52:1872:-55.7169,0,-415.006	0/1:177:96,81:96:3439:81:2903:-158.078,0,-245.48	1/1:121:0,121:0:0:121:4348:-297.251,-36.4246,0	1/1:88:0,88:0:0:88:3156:-237.418,-26.4906,0	1/1:75:1,74:1:36:74:2647:-188.374,-19.0746,0	1/1:57:0,57:0:0:57:2043:-140.38,-17.1587,0	0/1:71:25,46:25:896:46:1644:-92.0209,0,-52.4296	0/1:348:167,181:167:5951:181:6496:-386.164,0,-416.801	1/1:190:0,190:0:0:190:6811:-464.768,-57.1957,0	0/1:38:16,22:16:572:22:783:-42.5788,0,-36.9705	1/1:183:0,183:0:0:183:6560:-489.152,-55.0885,0	0/1:140:83,57:83:2968:57:2044:-97.0621,0,-214.417	1/1:159:0,159:0:0:159:5716:-413.514,-47.8638,0	1/1:19:0,19:0:0:19:684:-46.902,-5.71957,0	1/1:25:0,25:0:0:25:891:-61.4158,-7.52575,0	0/0:510:502,8:502:17871:8:288:0,-134.847,-1480.13	0/0:813:802,11:802:28670:11:396:0,-219.15,-2373.14	0/0:582:569,12:569:20249:12:432:0,-147.601,-1682.15	1/1:274:0,274:0:0:274:9827:-742.128,-82.4822,0	0/1:114:54,60:54:1936:60:2156:-113.965,0,-132.874	0/1:333:280,53:280:10007:53:1908:-21.7292,0,-739.203	0/0:422:409,9:409:14554:9:324:0,-103.828,-1227.61	0/1:159:74,85:74:2647:85:3048:-159.636,0,-177.423	0/1:162:118,43:118:4184:43:1548:-57.4252,0,-311.144	0/1:57:34,23:34:1216:23:828:-39.7543,0,-88.2589	0/1:114:35,79:35:1230:79:2840:-172.216,0,-73.701	0/1:82:30,52:30:1059:52:1868:-111.505,0,-68.027	1/1:96:0,96:0:0:96:3448:-257.768,-28.8989,0	1/1:143:0,143:0:0:143:5119:-327.418,-43.0473,0	0/1:162:70,92:70:2483:92:3304:-190.839,0,-166.989	1/1:123:1,122:1:36:122:4371:-313.124,-33.524,0	1/1:158:0,158:0:0:158:5680:-411.495,-47.5627,0	1/1:91:0,91:0:0:91:3242:-243.062,-27.3937,0	0/0:560:547,13:547:19492:13:468:0,-134.324,-1656.09	0/1:121:56,65:56:2008:65:2332:-113.363,0,-133.084	1/1:53:0,53:0:0:53:1904:-143.535,-15.9546,0	1/1:28:0,28:0:0:28:1004:-64.6848,-8.42884,0	0/1:118:79,39:79:2816:39:1404:-61.2809,0,-204.737	0/1:58:32,26:32:1148:26:936:-50.7552,0,-82.7217	0/0:405:391,12:391:13993:12:432:0,-89.2467,-1198.47	1/1:52:0,52:0:0:52:1851:-140.352,-15.6536,0	1/1:45:0,45:0:0:45:1620:-110.406,-13.5464,0	1/1:145:1,144:1:32:144:5172:-370.9,-40.5132,0	0/0:267:261,5:261:9274:5:180:0,-67.0115,-792.357	1/1:201:0,201:0:0:201:7174:-533.74,-60.507,0	1/1:224:0,224:0:0:224:8044:-581.34,-67.4307,0	0/1:96:66,28:66:2360:28:1008:-40.1745,0,-175.324	1/1:58:0,57:0:0:57:2044:-148.244,-17.1587,0	0/1:161:84,77:84:2986:77:2768:-150.036,0,-210.189	0/1:124:81,41:81:2904:41:1472:-70.1323,0,-217.581	0/0:228:203,24:203:7271:24:864:0,-9.23184,-562.484	1/1:51:0,51:0:0:51:1836:-117.533,-15.3525,0	0/1:74:36,38:36:1288:38:1364:-81.2767,0,-91.2022	0/0:226:213,13:213:7557:13:460:0,-34.3987,-622.158	1/1:113:0,113:0:0:113:4056:-259.321,-34.0164,0	1/1:62:0,62:0:0:62:2228:-142.664,-18.6639,0	1/1:190:1,188:1:36:188:6748:-457.25,-53.7497,0	1/1:145:0,145:0:0:145:5194:-375.919,-43.6494,0	0/1:140:58,82:58:2060:82:2931:-146.175,0,-132.668	1/1:114:1,113:1:36:113:4035:-255.774,-30.9298,0	1/1:26:0,26:0:0:26:936:-60.1296,-7.82678,0	1/1:110:0,110:0:0:110:3944:-270.377,-33.1133,0	1/1:123:0,123:0:0:123:4380:-281.975,-37.0267,0	1/1:238:0,238:0:0:238:8513:-618.674,-71.6451,0	1/1:132:0,132:0:0:132:4735:-341.713,-39.736,0	0/1:82:32,50:32:1123:50:1800:-105.791,0,-73.1251	0/1:111:51,60:51:1808:60:2156:-123.141,0,-123.437	0/1:132:55,77:55:1967:77:2755:-160.379,0,-132.314	1/1:74:0,74:0:0:74:2656:-170.248,-22.2762,0	1/1:110:0,109:0:0:109:3908:-251.057,-32.8123,0	1/1:107:0,107:0:0:107:3835:-246.681,-32.2102,0	0/1:302:265,37:265:9464:37:1332:-0.628452,0,-717.517	0/1:525:445,79:445:15897:79:2836:-36.345,0,-1205.64	0/1:89:43,46:43:1544:46:1634:-92.1724,0,-107.388	1/1:85:0,84:0:0:84:3003:-218.646,-25.2865,0	1/1:137:0,135:0:0:135:4840:-349.225,-40.6391,0
chr07	24178974	.	G	A	176378	PASS	AB=0.658204;ABP=910.629;AC=147;AF=0.781915;AN=188;AO=9322;CIGAR=1X;DP=10773;DPB=10773;DPRA=0;EPP=20245.5;EPPR=3149.47;GTI=5;LEN=1;MEANALT=1.02128;MQM=36.3401;MQMR=39.3161;NS=94;NUMALT=1;ODDS=3.5554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=332340;QR=51003;RO=1449;RPL=0;RPP=20245.5;RPPR=3149.47;RPR=9322;RUN=1;SAF=0;SAP=20245.5;SAR=9322;SRF=0;SRP=3149.47;SRR=1449;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:2,33:2:68:33:1179:-91.9413,-5.3545,0	0/1:165:49,116:49:1715:116:4146:-292.817,0,-93.2326	0/1:100:21,79:21:752:79:2815:-200.438,0,-32.3537	0/1:195:70,125:70:2454:125:4449:-305.172,0,-153.914	1/1:111:0,111:0:0:111:3976:-323.706,-33.4143,0	1/1:120:0,120:0:0:120:4300:-352.136,-36.1236,0	0/1:148:58,90:58:2004:90:3200:-223.778,0,-129.689	1/1:227:0,227:0:0:227:8090:-664.079,-68.3338,0	1/1:135:0,135:0:0:135:4817:-397.02,-40.6391,0	0/1:142:55,87:55:1956:87:3092:-214.144,0,-126.252	1/1:96:0,96:0:0:96:3425:-284.104,-28.8989,0	0/1:46:22,24:22:763:24:860:-57.6293,0,-49.5115	0/1:53:22,31:22:784:31:1116:-76.4607,0,-48.6719	0/1:134:50,84:50:1681:84:2979:-202.589,0,-103.498	0/1:53:26,27:26:936:27:950:-64.0984,0,-64.2096	1/1:63:0,62:0:0:62:2192:-174.319,-18.6639,0	1/1:106:0,106:0:0:106:3774:-310.631,-31.9092,0	1/1:79:0,79:0:0:79:2827:-231.063,-23.7814,0	1/1:44:0,44:0:0:44:1575:-129.413,-13.2453,0	0/1:159:39,120:39:1385:120:4276:-307.176,0,-72.4554	1/1:141:0,141:0:0:141:5030:-406.458,-42.4452,0	1/1:219:0,219:0:0:219:7776:-659.174,-65.9256,0	1/1:91:0,91:0:0:91:3259:-272.498,-27.3937,0	1/1:167:0,167:0:0:167:5958:-482.933,-50.272,0	0/1:73:8,65:8:288:65:2328:-168.251,0,-2.15721	0/1:364:113,251:113:3969:251:8949:-648.657,0,-238.678	1/1:194:0,194:0:0:194:6927:-561.873,-58.3998,0	0/1:32:20,12:20:699:12:432:-25.841,0,-46.7559	1/1:246:0,246:0:0:246:8732:-739.036,-74.0534,0	0/1:301:84,217:84:2957:217:7740:-538.442,0,-160.716	1/1:209:0,209:0:0:209:7461:-621.37,-62.9153,0	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	1/1:9:0,9:0:0:9:324:-26.7148,-2.70927,0	0/1:4:1,3:1:36:3:108:-8.03315,0,-2.14203	0/1:8:6,2:6:216:2:72:-3.85991,0,-15.9956	0/1:3:2,1:2:72:1:27:-1.74551,0,-5.3596	1/1:171:0,171:0:0:171:6080:-518.599,-51.4761,0	0/1:230:62,168:62:2185:168:6019:-415.459,0,-117.265	0/1:52:22,30:22:767:30:1080:-71.4518,0,-48.5684	1/1:1:0,1:0:0:1:36:-3.29902,-0.30103,0	0/1:164:43,121:43:1528:121:4335:-301.571,0,-79.2032	0/1:31:13,18:13:453:18:644:-42.8596,0,-29.3862	0/1:104:21,83:21:752:83:2976:-210.795,0,-31.6719	0/1:62:37,25:37:1311:25:883:-55.6299,0,-94.2722	0/1:41:20,21:20:708:21:748:-50.6401,0,-49.7565	1/1:127:0,127:0:0:127:4542:-387.724,-38.2308,0	1/1:142:0,142:0:0:142:5087:-416.894,-42.7463,0	0/1:185:45,140:45:1594:140:4979:-356.961,0,-82.2927	1/1:163:0,163:0:0:163:5821:-483.569,-49.0679,0	1/1:202:0,202:0:0:202:7160:-592.142,-60.8081,0	1/1:241:0,241:0:0:241:8601:-729.894,-72.5482,0	1/1:4:0,4:0:0:4:140:-12.1556,-1.20412,0	0/1:129:33,96:33:1184:96:3448:-243.718,0,-60.5523	1/1:103:0,103:0:0:103:3669:-313.389,-31.0061,0	1/1:16:0,16:0:0:16:572:-45.0981,-4.81648,0	0/1:113:34,79:34:1193:79:2809:-194.148,0,-67.7183	0/1:26:4,22:4:144:22:784:-57.7037,0,-5.05179	1/1:3:0,3:0:0:3:108:-9.58608,-0.90309,0	1/1:31:0,31:0:0:31:1086:-92.7216,-9.33193,0	1/1:122:0,122:0:0:122:4333:-349.401,-36.7257,0	1/1:165:2,163:2:72:163:5825:-475.963,-43.0566,0	0/1:4:2,2:2:72:2:72:-5.15356,0,-5.4092	1/1:199:0,199:0:0:199:7032:-600.082,-59.905,0	1/1:277:2,275:2:63:275:9853:-811.99,-77.5297,0	0/1:111:36,75:36:1288:75:2688:-182.714,0,-76.3745	1/1:107:0,107:0:0:107:3813:-319.371,-32.2102,0	0/1:147:52,95:52:1826:95:3403:-237.835,0,-112.661	0/1:169:81,88:81:2866:88:3155:-210.284,0,-195.677	0/1:21:10,11:10:360:11:374:-24.84,0,-22.9579	1/1:121:0,121:0:0:121:4297:-351.463,-36.4246,0	0/1:115:46,69:46:1636:69:2450:-172.329,0,-109.541	0/1:41:19,22:19:684:22:788:-54.4384,0,-47.4438	1/1:110:0,110:0:0:110:3931:-324.183,-33.1133,0	1/1:66:0,66:0:0:66:2351:-191.341,-19.868,0	1/1:381:0,381:0:0:381:13526:-1098.87,-114.692,0	1/1:167:0,167:0:0:167:5966:-495.985,-50.272,0	1/1:192:15,177:15:521:177:6299:-471.769,-13.6703,0	1/1:156:1,155:1:36:155:5543:-453.768,-43.6145,0	1/1:6:0,6:0:0:6:207:-17.8687,-1.80618,0	1/1:103:0,103:0:0:103:3654:-298.583,-31.0061,0	1/1:158:0,158:0:0:158:5639:-461.694,-47.5627,0	1/1:236:0,236:0:0:236:8417:-700.84,-71.0431,0	1/1:123:0,123:0:0:123:4408:-365.146,-37.0267,0	0/1:61:26,35:26:879:35:1256:-85.187,0,-57.4687	0/1:60:26,34:26:924:34:1207:-82.5474,0,-61.6585	0/1:138:62,76:62:2204:76:2721:-185.598,0,-149.377	1/1:40:0,40:0:0:40:1440:-118.629,-12.0412,0	1/1:61:0,61:0:0:61:2175:-178.48,-18.3628,0	1/1:69:1,68:1:27:68:2422:-197.252,-18.0754,0	0/1:37:18,18:18:636:18:631:-40.9477,0,-43.8544	0/1:113:49,64:49:1687:64:2265:-147.172,0,-108.917	0/1:41:19,22:19:668:22:792:-53.2273,0,-46.2878	1/1:141:0,141:0:0:141:4994:-414.247,-42.4452,0	1/1:101:0,101:0:0:101:3609:-301.915,-30.404,0
chr07	24178985	.	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chr07	24178993	.	C	T	17024.1	PASS	AB=0.339223;ABP=956.118;AC=41;AF=0.218085;AN=188;AO=1463;CIGAR=1X;DP=10893;DPB=10893;DPRA=0.921842;EPP=3179.87;EPPR=20460.5;GTI=5;LEN=1;MEANALT=1.08511;MQM=39.1784;MQMR=36.3427;NS=94;NUMALT=1;ODDS=2.71934;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52420;QR=337299;RO=9421;RPL=0;RPP=3179.87;RPPR=20460.5;RPR=1463;RUN=1;SAF=0;SAP=3179.87;SAR=1463;SRF=0;SRP=20460.5;SRR=9421;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:33,2:33:1165:2:72:0,-5.10236,-90.6336	0/1:169:120,49:120:4307:49:1756:-93.4633,0,-304.652	0/1:105:83,22:83:2979:22:788:-33.8603,0,-212.235	0/1:196:124,72:124:4436:72:2576:-163.352,0,-303.813	0/0:110:110,0:110:3952:0:0:0,-33.1133,-321.296	0/0:122:122,0:122:4369:0:0:0,-36.7257,-357.842	0/1:152:93,59:93:3308:59:2101:-136.667,0,-231.425	0/0:230:230,0:230:8244:0:0:0,-69.2369,-675.686	0/0:133:133,0:133:4757:0:0:0,-40.037,-391.399	0/1:142:85,56:85:3060:56:2005:-129.629,0,-211.226	0/0:95:94,0:94:3340:0:0:0,-28.2968,-276.941	0/1:45:23,22:23:828:22:784:-51.0399,0,-55.1586	0/1:55:32,23:32:1148:23:828:-51.5619,0,-78.6869	0/1:137:87,50:87:3097:50:1793:-109.51,0,-211.292	0/1:53:27,26:27:968:26:936:-64.2096,0,-65.2708	0/0:67:67,0:67:2400:0:0:0,-20.169,-190.902	0/0:109:109,0:109:3896:0:0:0,-32.8123,-320.49	0/0:82:82,0:82:2936:0:0:0,-24.6845,-240.283	0/0:43:43,0:43:1540:0:0:0,-12.9443,-126.57	0/1:162:123,39:123:4385:39:1404:-72.1295,0,-315.425	0/0:143:143,0:143:5125:0:0:0,-43.0473,-413.246	0/0:223:223,0:223:8004:0:0:0,-67.1297,-675.807	0/0:90:90,0:90:3232:0:0:0,-27.0927,-269.95	0/0:168:168,0:168:5990:0:0:0,-50.573,-485.189	0/1:76:67,9:67:2408:9:320:-3.34606,0,-173.401	0/1:369:253,115:253:9060:115:4124:-250.124,0,-655.928	0/0:194:194,0:194:6940:0:0:0,-58.3998,-560.913	0/1:33:13,20:13:464:20:720:-47.8828,0,-27.9088	0/0:243:243,0:243:8662:0:0:0,-73.1503,-731.865	0/1:303:216,87:216:7743:87:3086:-170.51,0,-537.469	0/0:208:208,0:208:7445:0:0:0,-62.6142,-619.811	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.24616	0/0:9:9,0:9:324:0:0:0,-2.70927,-26.7955	0/1:4:3,1:3:108:1:36:-2.14203,0,-8.03315	0/1:8:2,6:2:72:6:212:-15.7523,0,-3.85991	0/1:3:1,2:1:36:2:72:-5.3596,0,-2.39593	0/0:171:171,0:171:6113:0:0:0,-51.4761,-520.528	0/1:239:176,63:176:6309:63:2264:-119.874,0,-434.543	0/1:53:30,23:30:1072:23:824:-52.5307,0,-70.709	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.29902	0/1:166:122,44:122:4375:44:1565:-80.9442,0,-303.299	0/1:31:18,13:18:648:13:468:-30.5938,0,-43.0611	0/1:104:83,21:83:2988:21:748:-31.3981,0,-211.396	0/1:62:26,36:26:921:36:1287:-92.1292,0,-58.0167	0/1:40:20,20:20:716:20:716:-50.6588,0,-48.2601	0/0:128:128,0:128:4567:0:0:0,-38.5318,-390.68	0/0:143:143,0:143:5121:0:0:0,-43.0473,-419.598	0/1:191:146,45:146:5233:45:1616:-81.7672,0,-374.627	0/0:166:164,0:164:5858:0:0:0,-49.3689,-487.072	0/0:203:202,0:202:7233:0:0:0,-60.8081,-596.205	0/0:237:237,0:237:8493:0:0:0,-71.3441,-720.761	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.36921	0/1:134:100,34:100:3588:34:1224:-62.2984,0,-253.851	0/0:104:104,0:104:3736:0:0:0,-31.3071,-318.171	0/0:16:16,0:16:576:0:0:0,-4.81648,-45.3197	0/1:115:79,35:79:2811:35:1260:-71.6574,0,-193.332	0/1:26:22,4:22:792:4:144:-5.05179,0,-58.1787	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.58608	0/0:31:31,0:31:1112:0:0:0,-9.33193,-93.9535	0/0:129:129,0:129:4601:0:0:0,-38.8329,-371.329	0/0:168:166,2:166:5940:2:72:0,-43.9597,-485.434	0/1:4:2,2:2:72:2:72:-5.4092,0,-5.15356	0/0:198:198,0:198:7124:0:0:0,-59.6039,-604.87	0/0:276:274,2:274:9798:2:72:0,-76.471,-807.094	0/1:108:74,34:74:2660:34:1220:-71.4193,0,-181.028	0/0:107:107,0:107:3825:0:0:0,-32.2102,-320.385	0/1:152:101,51:101:3628:51:1832:-110.996,0,-254.459	0/1:170:88,82:88:3160:82:2925:-200.095,0,-209.248	0/1:21:11,10:11:392:10:360:-23.2309,0,-25.9658	0/0:124:124,0:124:4422:0:0:0,-37.3277,-361.137	0/1:118:73,45:73:2605:45:1620:-106.851,0,-183.845	0/1:41:22,19:22:792:19:680:-47.1431,0,-54.6596	0/0:112:112,0:112:3998:0:0:0,-33.7154,-328.975	0/0:68:68,0:68:2409:0:0:0,-20.47,-196.222	0/0:383:383,0:383:13752:0:0:0,-115.294,-1114.74	0/0:168:168,0:168:6036:0:0:0,-50.573,-498.474	0/0:197:181,15:181:6491:15:536:0,-14.0122,-485.979	0/0:160:159,1:159:5716:1:36:0,-44.8187,-467.097	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.4499	0/0:103:103,0:103:3673:0:0:0,-31.0061,-299.867	0/0:156:156,0:156:5583:0:0:0,-46.9607,-457.587	0/0:238:238,0:238:8544:0:0:0,-71.6451,-710.773	0/0:123:123,0:123:4391:0:0:0,-37.0267,-363.868	0/1:62:36,26:36:1288:26:932:-61.3624,0,-86.7333	0/1:63:35,28:35:1256:28:1008:-67.249,0,-85.5528	0/1:140:77,63:77:2755:63:2267:-154.118,0,-187.896	0/0:39:39,0:39:1395:0:0:0,-11.7402,-115.581	0/0:67:67,0:67:2396:0:0:0,-20.169,-196.365	0/0:70:70,0:70:2520:0:0:0,-21.0721,-207.454	0/1:37:18,19:18:648:19:684:-46.7271,0,-41.8222	0/1:116:70,46:70:2507:46:1656:-104.56,0,-166.557	0/1:40:21,19:21:743:19:684:-47.8116,0,-49.7267	0/0:144:143,1:143:5109:1:35:0,-41.2651,-421.485	0/0:102:101,0:101:3612:0:0:0,-30.404,-302.03
chr07	24191430	.	A	G	11602.2	PASS	AB=0.471604;ABP=18.4257;AC=46;AF=0.247312;AN=186;AO=1051;CIGAR=1X;DP=5030;DPB=5030;DPRA=0.83053;EPP=2285.23;EPPR=8643.3;GTI=4;LEN=1;MEANALT=1;MQM=31.7869;MQMR=56.7791;NS=93;NUMALT=1;ODDS=0.789881;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37469;QR=140450;RO=3979;RPL=0;RPP=2285.23;RPPR=8643.3;RPR=1051;RUN=1;SAF=1051;SAP=2285.23;SAR=0;SRF=3979;SRP=8643.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:14,9:14:500:9:324:-16.879,0,-38.3978	0/1:75:41,34:41:1442:34:1220:-66.4337,0,-107.288	0/1:115:68,47:68:2410:47:1677:-87.0664,0,-182.4	0/1:144:67,77:67:2325:77:2738:-173.635,0,-165.403	0/0:77:77,0:77:2711:0:0:0,-23.1793,-242.861	0/0:33:33,0:33:1139:0:0:0,-9.93399,-102.697	0/1:94:56,38:56:1993:38:1353:-75.2208,0,-151.294	0/0:69:69,0:69:2435:0:0:0,-20.7711,-219.197	0/0:45:45,0:45:1601:0:0:0,-13.5463,-143.397	0/1:54:29,25:29:1040:25:885:-54.4128,0,-77.1193	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.2479	0/1:28:12,16:12:432:16:576:-32.7706,0,-30.7121	0/1:22:10,12:10:356:12:432:-25.2181,0,-25.6147	0/1:33:19,14:19:684:14:500:-25.7284,0,-51.6821	0/1:27:15,12:15:540:12:432:-25.44,0,-40.8026	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.4111	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.4556	0/0:25:25,0:25:900:0:0:0,-7.52575,-80.6015	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4071	0/1:132:76,56:76:2679:56:2008:-117.113,0,-199.834	0/0:50:50,0:50:1735:0:0:0,-15.0515,-155.625	0/0:148:148,0:148:5164:0:0:0,-44.5524,-464.343	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.152	0/0:51:51,0:51:1813:0:0:0,-15.3525,-162.128	0/1:63:38,25:38:1338:25:900:-45.4717,0,-101.087	0/1:197:112,85:112:3963:85:3037:-188.903,0,-297.136	0/0:121:121,0:121:4254:0:0:0,-36.4246,-380.388	0/1:15:9,6:9:324:6:212:-10.7532,0,-24.2323	0/0:232:232,0:232:8215:0:0:0,-69.839,-737.025	0/1:55:29,26:29:1010:26:906:-47.834,0,-73.8055	0/0:68:68,0:68:2406:0:0:0,-20.47,-216.235	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59142	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6111	.:.:.:.:.:.:.:.	0/1:7:3,4:3:104:4:144:-8.63302,0,-7.59334	0/1:10:3,7:3:93:7:252:-15.5674,0,-5.66452	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.879	0/1:79:40,39:40:1421:39:1392:-75.3447,0,-103.974	0/1:16:9,7:9:324:7:237:-12.9805,0,-24.6811	0/1:4:2,2:2:72:2:72:-4.15593,0,-5.61958	0/1:91:55,36:55:1937:36:1292:-64.2035,0,-146.316	0/1:11:6,5:6:212:5:180:-9.58755,0,-16.0703	0/1:71:38,33:38:1319:33:1180:-62.7202,0,-97.044	0/1:17:10,7:10:360:7:252:-14.86,0,-27.6206	0/1:21:9,12:9:324:12:432:-27.4234,0,-23.178	0/0:56:56,0:56:1933:0:0:0,-16.8577,-173.909	0/0:79:79,0:79:2775:0:0:0,-23.7814,-249.527	0/1:123:62,61:62:2149:61:2157:-134.067,0,-155.321	0/0:73:73,0:73:2571:0:0:0,-21.9752,-231.301	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.183	0/0:128:128,0:128:4505:0:0:0,-38.5318,-404.399	0/1:11:6,5:6:201:5:180:-11.3517,0,-15.0994	0/1:92:50,42:50:1800:42:1512:-81.1968,0,-134.363	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.0913	0/1:75:33,42:33:1154:42:1470:-82.8971,0,-81.2164	0/1:26:13,13:13:468:13:464:-29.3661,0,-34.6266	1/1:9:0,9:0:0:9:324:-27.052,-2.70927,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7381	0/0:46:46,0:46:1622:0:0:0,-13.8474,-145.779	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.017	0/1:6:5,1:5:180:1:36:-1.38144,0,-14.7459	0/0:101:101,0:101:3518:0:0:0,-30.404,-314.93	0/0:69:66,3:66:2349:3:108:0,-12.267,-203.039	0/1:37:23,14:23:811:14:504:-24.9641,0,-61.8221	0/0:56:56,0:56:1952:0:0:0,-16.8577,-175.906	0/1:75:31,44:31:1097:44:1565:-101.615,0,-76.281	0/1:61:22,39:22:773:39:1389:-89.3556,0,-51.3468	0/1:5:4,1:4:129:1:21:-0.53143,0,-10.4033	0/0:69:69,0:69:2446:0:0:0,-20.7711,-219.856	0/1:52:27,25:27:964:25:892:-56.7466,0,-71.3406	0/1:21:13,8:13:468:8:269:-15.7144,0,-35.6749	0/0:115:115,0:115:4093:0:0:0,-34.6184,-366.75	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2795	0/0:62:62,0:62:2213:0:0:0,-18.6639,-198.478	0/0:102:102,0:102:3589:0:0:0,-30.7051,-323.03	0/1:70:34,36:34:1167:36:1296:-73.194,0,-83.4856	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.8952	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0724	0/0:85:85,0:85:3000:0:0:0,-25.5875,-269.345	0/0:104:104,0:104:3626:0:0:0,-31.3071,-326.163	0/0:145:145,0:145:5139:0:0:0,-43.6493,-462.256	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.614	0/1:22:10,12:10:345:12:432:-27.5308,0,-24.5539	0/1:25:12,13:12:432:13:468:-30.0882,0,-31.6954	0/1:38:24,14:24:860:14:504:-29.0437,0,-66.0371	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.6174	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.701	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2245	0/1:18:7,11:7:252:11:396:-22.7923,0,-17.0975	0/1:23:13,10:13:468:10:345:-18.0343,0,-34.8277	0/1:17:4,13:4:144:13:468:-31.8281,0,-8.18977	0/0:43:43,0:43:1488:0:0:0,-12.9443,-133.604	0/0:30:29,1:29:1014:1:36:0,-5.84328,-88.1988
chr07	24191469	.	GAT	AAT,AAA	102600	PASS	AB=0.52844,0.470183;ABP=18.3262,19.8442;AC=140,46;AF=0.752688,0.247312;AN=186;AO=3961,1041;CIGAR=1X2M,1X1M1X;DP=5008;DPB=5008.67;DPRA=6.03744,1.0181;EPP=8604.21,2263.51;EPPR=7.35324;GTI=4;LEN=1,3;MEANALT=1.55435,2.02041;MQM=56.8563,31.8165;MQMR=60;NS=93;NUMALT=2;ODDS=0.957674;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=141346,36896;QR=70;RO=2;RPL=3961,1041;RPP=8604.21,2263.51;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=3961,1041;SAP=8604.21,2263.51;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:23:0,14,9:0:0:14,9:504,320:-62.1573,-21.0056,-16.7912,-41.4684,0,-38.7592	1/2:75:0,41,34:0:0:41,34:1468,1215:-198.354,-78.6516,-66.3093,-120.023,0,-109.788	1/2:116:0,68,48:0:0:68,48:2423,1714:-306.503,-109.051,-88.5814,-197.766,0,-183.316	1/2:144:0,68,76:0:0:68,76:2391,2677:-384.921,-190.889,-170.419,-194.364,0,-171.486	1/1:76:0,76,0:0:0:76,0:2717,0:-243.716,-22.8783,0,-243.716,-22.8783,-243.716	1/1:33:0,33,0:0:0:33,0:1188,0:-107.108,-9.93399,0,-107.108,-9.93399,-107.108	1/2:93:0,55,38:0:0:55,38:1960,1350:-252.047,-92.2971,-75.7404,-160.074,0,-148.635	1/1:68:0,68,0:0:0:68,0:2444,0:-220.077,-20.47,0,-220.077,-20.47,-220.077	1/1:46:0,46,0:0:0:46,0:1646,0:-148.092,-13.8474,0,-148.092,-13.8474,-148.092	1/2:53:0,28,25:0:0:28,25:1000,880:-144.275,-63.0051,-54.5763,-81.6029,0,-74.0771	1/1:24:1,23,0:1:34:23,0:824,0:-70.9448,-3.82581,0,-71.2458,-6.92369,-74.0031	1/2:27:0,12,15:0:0:12,15:432,536:-69.3376,-34.1348,-30.5224,-35.5286,0,-31.0132	1/2:22:0,10,12:0:0:10,12:356,430:-56.906,-27.984,-24.9737,-29.2471,0,-25.6347	1/2:32:0,19,13:0:0:19,13:684,450:-84.1348,-28.5472,-22.8276,-55.8965,0,-51.9831	1/2:27:0,15,12:0:0:15,12:532,430:-73.2382,-29.875,-25.3596,-43.6915,0,-40.0791	1/1:25:0,25,0:0:0:25,0:900,0:-80.9625,-7.52575,0,-80.9625,-7.52575,-80.9625	1/1:29:0,29,0:0:0:29,0:1030,0:-92.7563,-8.72987,0,-92.7563,-8.72987,-92.7563	1/1:24:0,24,0:0:0:24,0:854,0:-76.8196,-7.22472,0,-76.8196,-7.22472,-76.8196	1/1:5:0,5,0:0:0:5,0:180,0:-16.4071,-1.50515,0,-16.4071,-1.50515,-16.4071	1/2:129:0,76,53:0:0:76,53:2711,1872:-351.963,-131.623,-108.745,-220.668,0,-204.713	1/1:50:0,50,0:0:0:50,0:1796,0:-161.08,-15.0515,0,-161.08,-15.0515,-161.08	1/1:150:0,150,0:0:0:150,0:5350,0:-480.988,-45.1545,0,-480.988,-45.1545,-480.988	1/1:46:0,46,0:0:0:46,0:1646,0:-148.165,-13.8474,0,-148.165,-13.8474,-148.165	1/1:52:0,52,0:0:0:52,0:1837,0:-164.653,-15.6536,0,-164.653,-15.6536,-164.653	1/2:59:0,34,25:0:0:34,25:1216,874:-154.901,-56.1092,-45.8742,-99.1052,0,-91.5795	1/2:194:0,108,86:0:0:108,86:3828,3049:-535.253,-223.554,-191.043,-312.035,0,-286.146	1/1:122:0,122,0:0:0:122,0:4352,0:-389.624,-36.7257,0,-389.624,-36.7257,-389.624	1/2:15:0,9,6:0:0:9,6:317,216:-39.0813,-13.5517,-10.8424,-25.8364,0,-24.0302	1/1:228:0,227,1:0:0:227,1:8118,28:-729.893,-68.3338,0,-727.677,-65.8383,-727.376	1/2:54:0,28,26:0:0:28,26:992,928:-137.965,-57.8015,-49.3726,-80.4772,0,-72.6504	1/1:65:0,65,0:0:0:65,0:2313,0:-208.241,-19.567,0,-208.241,-19.567,-208.241	1/1:1:0,1,0:0:0:1,0:36,0:-3.59142,-0.30103,0,-3.59142,-0.30103,-3.59142	1/1:14:0,14,0:0:0:14,0:504,0:-45.6111,-4.21442,0,-45.6111,-4.21442,-45.6111	.:.:.:.:.:.:.:.	1/2:7:0,3,4:0:0:3,4:104,144:-18.0112,-9.53611,-8.63302,-8.79746,0,-7.59334	1/2:10:0,3,7:0:0:3,7:108,252:-25.3009,-16.4705,-15.5674,-9.16926,0,-7.06205	1/1:68:0,68,0:0:0:68,0:2448,0:-220.468,-20.47,0,-220.468,-20.47,-220.468	1/2:79:0,40,39:0:0:40,39:1406,1358:-200.395,-86.341,-74.2998,-114.368,0,-102.628	1/2:16:0,9,7:0:0:9,7:324,252:-42.9382,-16.4705,-13.7612,-26.7883,0,-24.6811	1/2:4:0,2,2:0:0:2,2:72,72:-10.659,-4.75799,-4.15593,-6.22164,0,-5.61958	1/2:89:0,53,36:0:0:53,36:1904,1284:-234.944,-80.4688,-64.5143,-154.729,0,-143.892	1/2:10:0,6,4:0:0:6,4:216,144:-26.8452,-9.23388,-7.4277,-17.9241,0,-16.72	1/2:69:0,35,32:0:0:35,32:1241,1148:-172.143,-71.4689,-60.9329,-100.635,0,-91.0017	1/2:16:0,10,6:0:0:10,6:360,214:-44.8777,-15.4813,-12.471,-29.7278,0,-27.9216	1/2:22:0,10,12:0:0:10,12:356,422:-58.6439,-29.6118,-26.6015,-29.3647,0,-25.7523	1/1:59:0,59,0:0:0:59,0:2074,0:-186.559,-17.7608,0,-186.559,-17.7608,-186.559	1/1:77:0,77,0:0:0:77,0:2723,0:-244.726,-23.1793,0,-244.726,-23.1793,-244.726	1/2:125:0,61,63:0:0:61,63:2187,2225:-335.107,-157.399,-139.036,-177.761,0,-158.796	1/1:72:0,72,0:0:0:72,0:2584,0:-232.434,-21.6742,0,-232.434,-21.6742,-232.434	1/1:60:0,60,0:0:0:60,0:2117,0:-190.425,-18.0618,0,-190.425,-18.0618,-190.425	1/1:126:0,126,0:0:0:126,0:4508,0:-405.402,-37.9298,0,-405.402,-37.9298,-405.402	1/2:11:0,6,5:0:0:6,5:216,180:-30.7986,-13.1579,-11.3517,-17.9781,0,-16.4729	1/2:92:0,51,41:0:0:51,41:1832,1451:-242.401,-93.1358,-77.7833,-149.583,0,-137.241	1/1:18:0,18,0:0:0:18,0:629,0:-56.9338,-5.41854,0,-56.9338,-5.41854,-56.9338	1/1:16:0,16,0:0:0:16,0:572,0:-51.7303,-4.81648,0,-51.7303,-4.81648,-51.7303	1/2:72:0,32,40:0:0:32,40:1152,1426:-182.903,-89.2456,-79.6126,-93.9809,0,-81.9397	1/2:27:0,14,13:0:0:14,13:504,468:-74.5083,-33.3679,-29.1534,-41.4775,0,-37.5641	2/2:9:0,0,9:0:0:0,9:0,322:-26.9505,-26.9505,-26.9505,-2.709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chr07	24212137	.	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chr07	24212150	.	TTCATA	ATCATA,AACAATT	143153	PASS	AB=0.535747,0.457612;ABP=88.2407,122.853;AC=123,65;AF=0.654255,0.345745;AN=188;AO=5527,3514;CIGAR=1X5M,2X1M1I2M1X;DP=9105;DPB=9692.83;DPRA=0,2.40254;EPP=12004.7,7633.56;EPPR=29.068;GTI=10;LEN=1,7;MEANALT=2.2234,2.6;MQM=59.5621,22.3557;MQMR=56.75;NS=94;NUMALT=2;ODDS=3506;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=1;QA=197914,124182;QR=400;RO=12;RPL=5527,3514;RPP=12004.7,7633.56;RPPR=29.068;RPR=0,0;RUN=1,1;SAF=5527,3514;SAP=12004.7,7633.56;SAR=0,0;SRF=12;SRP=29.068;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,79,0:0:0:79,0:2836,0:-255.222,-23.7814,0,-255.222,-23.7814,-255.222	1/1:73:0,73,0:0:0:73,0:2624,0:-236.407,-21.9752,0,-236.407,-21.9752,-236.407	1/1:259:0,257,0:0:0:257,0:9221,0:-829.37,-77.3647,0,-829.37,-77.3647,-829.37	1/2:218:1,143,74:1:36:143,74:5125,2593:-537.036,-119.612,-79.5036,-414.693,0,-395.355	1/2:49:0,17,32:0:0:17,32:612,1144:-105.749,-55.8369,-50.7193,-50.2259,0,-40.593	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:120:0,88,31:0:0:88,31:3168,1092:-309.959,-51.3841,-24.8935,-258.561,0,-249.229	1/1:8:0,8,0:0:0:8,0:288,0:-26.108,-2.40824,0,-26.108,-2.40824,-26.108	1/1:104:0,102,0:0:0:102,0:3630,0:-326.392,-30.7051,0,-326.392,-30.7051,-326.392	1/2:112:0,90,20:0:0:90,20:3228,705:-296.431,-33.0736,-5.98093,-263.255,0,-257.234	1/2:96:0,15,80:0:0:15,80:527,2838:-175.801,-132.964,-128.449,-42.9383,0,-18.8559	1/1:119:0,118,0:0:0:118,0:4248,0:-382.142,-35.5215,0,-382.142,-35.5215,-382.142	1/1:78:2,76,0:2:72:76,0:2728,0:-238.914,-16.6436,0,-239.517,-22.8783,-245.391	1/2:151:1,100,48:1:32:100,48:3564,1686:-371.155,-80.9137,-53.3908,-287.897,0,-276.026	1/2:65:0,40,25:0:0:40,25:1432,887:-158.598,-41.7508,-29.7096,-117.119,0,-109.593	1/2:73:0,15,57:0:0:15,57:536,2026:-143.345,-99.6162,-95.1008,-43.8495,0,-26.6908	1/1:16:0,16,0:0:0:16,0:576,0:-52.1586,-4.81648,0,-52.1586,-4.81648,-52.1586	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:134:0,93,41:0:0:93,41:3340,1454:-340.829,-68.3176,-40.3218,-272.773,0,-260.431	1/2:146:0,54,91:0:0:54,91:1928,3227:-315.462,-158.588,-142.333,-156.97,0,-129.577	1/2:125:0,47,76:0:0:47,76:1688,2686:-263.92,-126.181,-112.033,-137.819,0,-114.94	1/2:163:0,77,84:0:0:77,84:2768,2967:-365.225,-139.449,-116.269,-225.778,0,-200.492	1/2:92:0,26,66:0:0:26,66:921,2312:-190.085,-115.103,-107.276,-75.3004,0,-55.4324	1/2:134:1,88,44:1:36:88,44:3160,1558:-331.147,-73.8157,-50.2653,-254.671,0,-244.363	1/2:194:0,124,70:0:0:124,70:4441,2475:-478.45,-116.342,-79.0138,-362.376,0,-341.304	1/2:317:0,149,168:0:0:149,168:5321,5932:-726.409,-292.621,-247.767,-434.084,0,-383.511	1/2:35:0,27,8:0:0:27,8:972,286:-93.6299,-14.2178,-6.08998,-79.6701,0,-77.2619	1/2:219:1,64,153:1:32:64,153:2296,5417:-438.499,-251.483,-234.788,-184.793,0,-141.306	1/2:190:0,132,58:0:0:132,58:4707,2029:-484.79,-101.081,-61.3448,-383.976,0,-366.516	1/2:109:0,27,82:0:0:27,82:972,2899:-215.679,-136.344,-128.217,-79.6594,0,-54.975	1/2:4:0,3,1:0:0:3,1:108,36:-10.8843,-1.97784,-1.07475,-9.16732,0,-8.86629	1/2:10:0,2,8:0:0:2,8:72,287:-20.1239,-14.2226,-13.6206,-6.23466,0,-3.82642	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:12:0,12,0:0:0:12,0:417,0:-37.86,-3.61236,0,-37.86,-3.61236,-37.86	1/2:180:0,45,135:0:0:45,135:1616,4755:-355.942,-224.119,-210.573,-132.146,0,-91.5073	1/2:131:0,85,45:0:0:85,45:3041,1583:-326.296,-78.3077,-52.7202,-248.034,0,-234.488	1/1:49:0,48,0:0:0:48,0:1724,0:-155.163,-14.4494,0,-155.163,-14.4494,-155.163	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:255:0,202,53:0:0:202,53:7237,1889:-682.948,-92.694,-31.8859,-590.509,0,-574.554	1/2:47:2,32,13:2:72:32,13:1148,456:-109.758,-16.6611,-12.9206,-87.7295,0,-89.6911	1/2:199:1,133,64:1:21:133,64:4776,2261:-499.235,-109.912,-71.4621,-388.088,0,-370.409	1/2:74:0,53,20:0:0:53,20:1903,711:-188.54,-33.206,-17.2514,-155.344,0,-149.324	1/2:47:0,31,16:0:0:31,16:1097,566:-116.229,-26.79,-17.4581,-89.7032,0,-84.8867	1/2:159:0,40,118:0:0:40,118:1440,4169:-313.086,-195.595,-183.554,-117.53,0,-82.0088	1/1:26:0,25,0:0:0:25,0:892,0:-80.4047,-7.52575,0,-80.4047,-7.52575,-80.4047	1/2:216:0,158,57:0:0:158,57:5643,2017:-554.726,-94.6163,-47.0536,-460.116,0,-442.957	1/2:75:0,8,67:0:0:8,67:288,2382:-135.269,-111.799,-109.391,-23.8138,0,-3.64475	1/2:89:0,26,63:0:0:26,63:936,2229:-180.967,-104.575,-96.7486,-76.7102,0,-57.7453	1/2:90:0,19,71:0:0:19,71:684,2509:-173.929,-118.088,-112.368,-56.1708,0,-34.7976	1/2:13:0,8,5:0:0:8,5:288,166:-31.9856,-8.39731,-5.98907,-23.8592,0,-22.354	1/1:145:0,144,0:0:0:144,0:5082,0:-455.782,-43.3483,0,-455.782,-43.3483,-455.782	1/2:61:0,27,33:0:0:27,33:972,1169:-134.131,-54.7582,-46.6304,-79.4162,0,-69.4822	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:211:1,150,59:1:31:150,59:5392,2064:-539.864,-100.189,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chr07	24212237	.	GCAT	ACAC,GCAC	488673	PASS	AB=0.700419,0.292385;ABP=8827.22,9472.25;AC=95,93;AF=0.505319,0.494681;AN=188;AO=17819,7405;CIGAR=1X2M1X,3M1X;DP=25407;DPB=25428.8;DPRA=0,0;EPP=38687.8,15952.7;EPPR=120.83;GTI=10;LEN=4,1;MEANALT=3.11702,3.11702;MQM=59.872,59.9635;MQMR=60;NS=94;NUMALT=2;ODDS=20347.6;PAIRED=0,0;PAIREDR=0;PAO=3.5,43.5;PQA=122,1552;PQR=1430;PRO=40;QA=625414,263180;QR=2147;RO=62;RPL=1,0;RPP=38687.8,16082.8;RPPR=137.642;RPR=17818,7405;RUN=1,1;SAF=0,15;SAP=38696.5,15952.7;SAR=17819,7390;SRF=2;SRP=120.83;SRR=60;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:93:0,60,33:0:0:60,33:2104,1188:-268.427,-97.2362,-79.1744,-171.489,0,-161.555	1/2:287:0,118,169:0:0:118,169:4165,5998:-828.196,-489.035,-453.513,-339.515,0,-288.641	1/2:379:0,284,93:0:0:284,93:9932,3318:-1078.51,-270.516,-185.024,-808.028,0,-780.032	1/2:695:0,565,126:0:0:565,126:19878,4500:-1985.03,-366.945,-196.863,-1618.15,0,-1580.22	1/2:187:0,125,62:0:0:125,62:4417,2224:-541.421,-181.701,-144.072,-360.018,0,-341.354	1/2:205:0,154,50:0:0:154,50:5423,1770:-585.484,-143.994,-97.6349,-441.307,0,-426.256	1/2:369:0,287,81:0:0:287,81:10066,2895:-1055.17,-236.042,-149.647,-819.128,0,-794.745	1/2:476:0,349,123:0:0:349,123:12225,4340:-1347.46,-352.778,-247.718,-994.709,0,-957.683	1/2:217:3,141,73:3:108:141,73:4910,2608:-602.118,-203.802,-170.169,-390.382,0,-377.22	1/2:428:0,288,139:0:0:288,139:10057,4937:-1220.42,-402.386,-315.69,-818.135,0,-776.292	1/2:90:1,57,32:1:36:57,32:1999,1139:-252.156,-89.8299,-75.6086,-159.625,0,-152.93	1/2:89:0,66,23:0:0:66,23:2303,824:-254.868,-67.5596,-47.6916,-187.664,0,-180.74	1/2:119:0,88,31:0:0:88,31:3026,1103:-335.783,-90.0731,-63.5825,-245.888,0,-236.556	1/2:192:0,133,59:0:0:133,59:4640,2091:-548.072,-170.699,-130.662,-377.725,0,-359.964	1/2:120:0,88,31:0:0:88,31:3117,1067:-340.504,-86.5833,-60.0926,-253.85,0,-244.518	1/2:95:0,42,52:0:0:42,52:1468,1851:-270.201,-150.785,-138.142,-119.467,0,-103.813	1/2:123:0,68,55:0:0:68,55:2405,1947:-354.831,-158.949,-138.479,-196.236,0,-179.679	1/2:103:0,74,27:0:0:74,27:2620,955:-291.109,-77.7729,-55.4967,-213.326,0,-205.198	1/2:39:0,25,14:0:0:25,14:882,500:-112.879,-41.0659,-33.5401,-72.1139,0,-67.8995	1/2:468:0,317,150:0:0:317,150:11152,5334:-1342.44,-434.819,-339.392,-907.755,0,-862.601	1/2:347:5,218,121:5:179:218,121:7608,4265:-949.912,-332.628,-281.601,-604.163,0,-582.336	1/2:564:0,459,103:0:0:459,103:16198,3665:-1617.64,-298.658,-160.485,-1318.95,0,-1287.94	1/2:254:6,152,96:6:208:152,96:5378,3428:-698.802,-262.571,-233.72,-421.131,0,-409.138	1/2:385:0,230,154:0:0:230,154:8104,5424:-1101.35,-441.56,-372.323,-659.778,0,-613.419	1/2:171:0,110,60:0:0:110,60:3860,2112:-486.05,-171.915,-138.802,-314.127,0,-296.065	1/2:660:1,401,252:1:36:401,252:14054,9029:-1876.75,-733.485,-615.71,-1140.68,0,-1067.76	1/2:727:1,509,209:1:36:509,209:17901,7438:-2059.07,-603.291,-453.004,-1453.17,0,-1393.2	1/2:90:0,76,13:0:0:76,13:2661,460:-253.764,-37.2761,-14.3978,-216.296,0,-212.383	1/2:781:5,505,271:5:180:505,271:17837,9623:-2220.32,-769.401,-632.068,-1437.73,0,-1370.84	1/2:274:8,146,116:8:267:146,116:5042,4124:-721.7,-314.493,-292.155,-388.035,0,-374.729	1/2:574:0,508,65:0:0:508,65:17736,2323:-1631.66,-189.225,-36.3017,-1442.26,0,-1422.69	1/2:87:0,78,9:0:0:78,9:2735,320:-248.992,-26.4331,-2.95275,-222.914,0,-220.205	1/2:59:0,40,19:0:0:40,19:1405,676:-169.789,-55.4484,-43.4072,-114.694,0,-108.975	1/2:153:0,79,74:0:0:79,74:2774,2635:-440.865,-215.121,-191.339,-226.097,0,-203.821	1/2:155:0,122,32:0:0:122,32:4248,1152:-439.383,-93.9974,-57.2717,-345.383,0,-335.75	1/2:49:0,35,14:0:0:35,14:1227,504:-141.305,-41.466,-30.9299,-100.196,0,-95.9817	1/2:446:1,324,120:1:36:324,120:11373,4239:-1267.55,-342.293,-247.697,-922.642,0,-889.456	1/2:706:0,514,191:0:0:514,191:18063,6741:-2018.99,-548.779,-394.05,-1470.08,0,-1412.58	1/2:82:0,58,24:0:0:58,24:2018,824:-231.335,-67.2478,-49.7881,-164.431,0,-157.207	1/2:86:0,53,33:0:0:53,33:1848,1171:-246.051,-95.7627,-79.8081,-150.64,0,-140.706	1/2:234:0,171,63:0:0:171,63:6036,2233:-673.658,-182.149,-130.673,-491.745,0,-472.78	1/2:75:0,56,18:0:0:56,18:1978,639:-213.075,-52.0042,-35.1466,-161.009,0,-155.591	1/2:488:0,356,129:0:0:356,129:12404,4577:-1381.49,-372.919,-265.752,-1008.58,0,-969.749	1/2:198:0,155,43:0:0:155,43:5443,1519:-566.597,-123.874,-77.2139,-442.9,0,-429.956	1/2:209:0,164,45:0:0:164,45:5724,1582:-594.624,-129.064,-79.6948,-465.852,0,-452.306	1/2:149:0,101,48:0:0:101,48:3522,1699:-425.164,-138.744,-108.34,-286.771,0,-272.322	1/2:364:0,243,120:0:0:243,120:8498,4291:-1041.2,-349.884,-276.734,-691.308,0,-655.184	1/2:855:1,618,233:1:28:618,233:21655,8293:-2435.25,-673.662,-489.844,-1759.68,0,-1691.75	1/2:321:0,227,92:0:0:227,92:8035,3304:-924.101,-269.627,-201.293,-654.575,0,-626.881	1/2:259:0,170,86:0:0:170,86:6000,3064:-738.324,-249.742,-198.567,-488.578,0,-462.689	1/2:461:5,341,114:5:179:341,114:12055,4063:-1296.81,-316.513,-228.46,-967.189,0,-947.469	1/2:119:0,94,25:0:0:94,25:3318,900:-343.918,-73.7375,-45.4407,-270.481,0,-262.955	1/2:342:0,250,90:0:0:250,90:8811,32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chr07	24247780	.	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chr07	24293791	.	TCTCAT	CCTCAT,CCTCGC	217824	PASS	AB=0.575875,0.416829;ABP=208.633,250.077;AC=144,44;AF=0.765957,0.234043;AN=188;AO=8394,1719;CIGAR=1X5M,1X3M2X;DP=10197;DPB=10197.2;DPRA=0,0.84998;EPP=18230.3,3735.77;EPPR=18.2106;GTI=5;LEN=1,6;MEANALT=2.21277,2.58333;MQM=59.978,59.6574;MQMR=60;NS=94;NUMALT=2;ODDS=3.02038;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=298518,59884;QR=241;RO=7;RPL=1,0;RPP=18221.7,3735.77;RPPR=18.2106;RPR=8393,1719;RUN=1,1;SAF=1,0;SAP=18221.7,3735.77;SAR=8393,1719;SRF=0;SRP=18.2106;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:56:0,31,25:0:0:31,25:1096,859:-159.364,-70.0937,-60.7617,-89.618,0,-82.0923	1/2:108:0,57,51:0:0:57,51:2023,1781:-310.038,-145.209,-128.051,-165.18,0,-149.828	1/2:95:0,38,56:0:0:38,56:1354,1956:-269.53,-159.162,-147.723,-110.439,0,-93.5814	1/2:197:0,114,82:0:0:114,82:4063,2859:-563.684,-232.495,-198.178,-331.181,0,-306.496	1/1:75:0,73,0:0:0:73,0:2604,0:-234.303,-21.9752,0,-234.303,-21.9752,-234.303	1/1:64:0,63,0:0:0:63,0:2230,0:-200.671,-18.9649,0,-200.671,-18.9649,-200.671	1/2:60:0,31,28:0:0:31,28:1116,957:-168.865,-77.793,-68.461,-91.2051,0,-82.7763	1/1:167:0,166,0:0:0:166,0:5914,0:-531.952,-49.971,0,-531.952,-49.971,-531.952	1/1:112:0,112,0:0:0:112,0:3974,0:-357.853,-33.7154,0,-357.853,-33.7154,-357.853	1/2:103:0,53,50:0:0:53,50:1900,1765:-298.776,-143.808,-127.853,-155.323,0,-140.272	1/1:53:0,52,0:0:0:52,0:1856,0:-166.96,-15.6536,0,-166.96,-15.6536,-166.96	1/2:116:0,70,43:0:0:70,43:2465,1478:-320.753,-120.065,-98.9933,-200.74,0,-187.795	1/2:103:0,61,42:0:0:61,42:2152,1469:-295.092,-119.86,-101.498,-175.583,0,-162.939	1/2:101:0,57,44:0:0:57,44:2013,1501:-286.054,-122.118,-104.959,-164.283,0,-151.037	1/2:72:0,42,30:0:0:42,30:1495,1058:-207.716,-85.8678,-73.2245,-122.201,0,-113.17	1/1:72:0,71,0:0:0:71,0:2492,0:-224.17,-21.3731,0,-224.17,-21.3731,-224.17	1/1:76:0,74,0:0:0:74,0:2634,0:-236.982,-22.2762,0,-236.982,-22.2762,-236.982	1/1:104:0,104,0:0:0:104,0:3663,0:-329.872,-31.3071,0,-329.872,-31.3071,-329.872	1/1:43:0,43,0:0:0:43,0:1522,0:-137.272,-12.9443,0,-137.272,-12.9443,-137.272	1/2:176:0,113,61:0:0:113,61:4030,2144:-503.074,-174.554,-140.538,-328.566,0,-310.203	1/1:173:0,172,0:0:0:172,0:6099,0:-548.526,-51.7772,0,-548.526,-51.7772,-548.526	1/1:139:0,136,0:0:0:136,0:4851,0:-436.385,-40.9401,0,-436.385,-40.9401,-436.385	1/1:122:0,121,0:0:0:121,0:4303,0:-387.099,-36.4246,0,-387.099,-36.4246,-387.099	1/1:157:0,152,1:0:0:152,1:5382,31:-484.182,-45.7566,0,-481.694,-43.2736,-481.393	1/2:57:0,33,24:0:0:33,24:1175,839:-164.372,-68.6014,-58.6674,-96.123,0,-88.8982	1/2:288:0,156,131:0:0:156,131:5554,4576:-824.984,-372.314,-325.353,-452.772,0,-413.337	1/1:230:0,229,0:0:0:229,0:8168,0:-734.883,-68.9359,0,-734.883,-68.9359,-734.883	1/2:43:1,28,14:1:36:28,14:1000,489:-118.063,-36.8294,-31.3387,-78.5893,0,-77.3124	1/1:275:0,273,0:0:0:273,0:9733,0:-875.671,-82.1812,0,-875.671,-82.1812,-875.671	1/2:170:0,99,69:0:0:99,69:3539,2415:-485.022,-196.476,-166.674,-288.548,0,-267.777	1/1:151:0,150,0:0:0:150,0:5317,0:-478.378,-45.1545,0,-478.378,-45.1545,-478.378	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:4:0,3,1:0:0:3,1:104,31:-11.279,-2.79842,-1.89533,-8.79971,0,-8.49868	1/2:5:0,3,2:0:0:3,2:108,69:-14.7717,-5.95048,-5.04739,-9.17208,0,-8.57002	1/1:308:0,307,0:0:0:307,0:10918,0:-982.204,-92.4162,0,-982.204,-92.4162,-982.204	1/2:162:1,98,59:1:30:98,59:3478,1996:-442.484,-159.401,-132.298,-280.984,0,-265.621	1/2:68:0,39,29:0:0:39,29:1395,1020:-197.133,-83.3794,-71.6392,-114.108,0,-105.378	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:173:0,114,59:0:0:114,59:4062,2084:-501.142,-170.046,-135.728,-331.45,0,-313.689	1/2:30:0,20,10:0:0:20,10:711,354:-87.1259,-29.1852,-23.1646,-58.295,0,-55.2847	1/2:137:0,75,61:0:0:75,61:2663,2130:-390.223,-173.235,-150.658,-216.979,0,-198.617	1/2:99:0,56,43:0:0:56,43:1984,1511:-284.958,-123.336,-106.478,-161.974,0,-149.03	1/2:88:0,54,31:0:0:54,31:1927,1072:-244.201,-87.1025,-70.8468,-157.101,0,-147.769	1/1:99:0,99,0:0:0:99,0:3507,0:-315.84,-29.802,0,-315.84,-29.802,-315.84	1/1:96:0,96,0:0:0:96,0:3407,0:-306.844,-28.8989,0,-306.844,-28.8989,-306.844	1/2:147:0,95,51:0:0:95,51:3395,1794:-422.835,-146.026,-117.428,-276.803,0,-261.45	1/1:148:0,147,0:0:0:147,0:5280,0:-475.083,-44.2514,0,-475.083,-44.2514,-475.083	1/1:153:0,151,1:0:0:151,1:5378,36:-483.81,-45.4555,0,-480.872,-42.4881,-480.571	1/1:272:0,269,0:0:0:269,0:9579,0:-861.744,-80.9771,0,-861.744,-80.9771,-861.744	1/2:4:0,1,3:0:0:1,3:36,99:-11.2784,-8.33349,-8.03246,-3.29724,0,-2.39415	1/2:93:0,58,35:0:0:58,35:2076,1221:-268.949,-99.6502,-82.1905,-169.651,0,-159.115	1/1:50:0,50,0:0:0:50,0:1792,0:-161.562,-15.0515,0,-161.562,-15.0515,-161.562	1/1:15:0,15,0:0:0:15,0:506,0:-45.8578,-4.51545,0,-45.8578,-4.51545,-45.8578	1/2:120:1,64,55:1:36:64,55:2284,1901:-337.41,-151.505,-135.177,-183.259,0,-169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chr07	24293813	.	C	T	188212	PASS	AB=0.586857;ABP=274.227;AC=145;AF=0.771277;AN=188;AO=8662;CIGAR=1X;DP=10388;DPB=10388;DPRA=0;EPP=18751.6;EPPR=3733.6;GTI=4;LEN=1;MEANALT=1.04255;MQM=59.9587;MQMR=59.7125;NS=94;NUMALT=1;ODDS=7.82604;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=310613;QR=61696;RO=1722;RPL=7;RPP=18751.6;RPPR=3733.6;RPR=8655;RUN=1;SAF=0;SAP=18812.3;SAR=8662;SRF=0;SRP=3742.29;SRR=1722;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:22,32:22:792:32:1148:-87.3742,0,-55.3467	0/1:106:48,58:48:1728:58:2057:-153.49,0,-123.883	0/1:96:56,40:56:1993:40:1436:-100.639,0,-150.73	0/1:195:82,113:82:2935:113:4068:-307.604,0,-205.671	1/1:76:0,75:0:0:75:2688:-241.803,-22.5773,0	1/1:66:0,66:0:0:66:2376:-214.094,-19.868,0	0/1:58:28,30:28:1004:30:1076:-79.6931,0,-73.2068	1/1:169:0,169:0:0:169:6040:-543.698,-50.8741,0	1/1:116:0,116:0:0:116:4176:-376.02,-34.9195,0	0/1:103:49,54:49:1760:54:1927:-142.699,0,-127.406	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	0/1:119:43,76:43:1548:76:2728:-209.939,0,-103.78	0/1:103:40,63:40:1440:63:2260:-172.657,0,-98.8916	0/1:101:43,58:43:1544:58:2084:-157.426,0,-108.831	0/1:71:28,43:28:1008:43:1544:-117.88,0,-69.6609	1/1:73:0,73:0:0:73:2622:-236.227,-21.9752,0	1/1:75:3,72:3:108:72:2588:-223.085,-12.5021,0	1/1:111:0,111:0:0:111:3962:-356.765,-33.4143,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:176:61,115:61:2184:115:4111:-317.192,0,-143.839	1/1:177:0,177:0:0:177:6353:-571.728,-53.2823,0	1/1:142:0,142:0:0:142:5107:-459.77,-42.7463,0	1/1:127:0,127:0:0:127:4564:-410.924,-38.2308,0	1/1:165:1,164:1:36:164:5884:-526.068,-46.0717,0	0/1:57:23,34:23:828:34:1216:-92.5879,0,-57.6808	0/1:290:131,159:131:4667:159:5697:-425.539,0,-332.885	1/1:232:0,232:0:0:232:8334:-750.056,-69.839,0	0/1:46:16,30:16:572:30:1072:-82.9445,0,-37.966	1/1:283:1,282:1:36:282:10132:-908.204,-81.5932,0	0/1:173:71,102:71:2548:102:3650:-276.606,0,-177.478	1/1:154:0,154:0:0:154:5505:-495.486,-46.3586,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:312:1,311:1:36:311:11153:-1000.05,-90.3231,0	0/1:162:60,102:60:2144:102:3654:-280.136,0,-144.453	0/1:68:29,39:29:1044:39:1404:-106.189,0,-73.8014	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:177:59,118:59:2124:118:4217:-326.426,0,-138.115	0/1:30:10,20:10:360:20:714:-55.556,0,-23.7088	0/1:143:62,81:62:2220:81:2910:-219.087,0,-157.003	0/1:100:42,58:42:1512:58:2084:-157.727,0,-106.269	0/1:89:31,58:31:1099:58:2084:-161.036,0,-72.4168	1/1:102:2,99:2:72:99:3549:-312.781,-23.9271,0	1/1:97:0,96:0:0:96:3433:-308.822,-28.8989,0	0/1:147:51,96:51:1828:96:3424:-264.12,0,-120.545	1/1:153:0,153:0:0:153:5484:-493.686,-46.0576,0	1/1:159:1,158:1:36:158:5676:-507.226,-44.2655,0	1/1:275:0,275:0:0:275:9852:-886.619,-82.7833,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:99:40,59:40:1436:59:2120:-161.267,0,-99.7267	1/1:52:0,52:0:0:52:1872:-168.741,-15.6536,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:120:54,66:54:1944:66:2364:-176.894,0,-139.085	0/1:79:21,58:21:748:58:2070:-162.788,0,-43.8621	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:105:0,105:0:0:105:3776:-340.036,-31.6082,0	1/1:178:0,178:0:0:178:6377:-574.01,-53.5833,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:251:0,251:0:0:251:8979:-808.087,-75.5585,0	1/1:253:2,251:2:72:251:9004:-803.499,-69.3239,0	0/1:77:42,35:42:1500:35:1256:-90.166,0,-112.106	1/1:104:1,103:1:36:103:3693:-328.972,-27.7088,0	0/1:130:38,91:38:1360:91:3276:-255.866,0,-83.5015	0/1:38:27,11:27:957:11:381:-23.1815,0,-75.0047	0/1:24:9,15:9:324:15:506:-38.634,0,-22.2765	1/1:85:0,85:0:0:85:3041:-273.918,-25.5876,0	0/1:112:52,60:52:1857:60:2160:-160.951,0,-133.672	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.3494	1/1:114:0,114:0:0:114:4100:-369.183,-34.3174,0	1/1:90:0,90:0:0:90:3226:-290.559,-27.0927,0	1/1:200:0,200:0:0:200:7182:-646.432,-60.206,0	1/1:223:0,223:0:0:223:8000:-719.988,-67.1297,0	0/1:127:41,86:41:1460:86:3080:-239.196,0,-93.4546	1/1:130:1,129:1:36:129:4632:-413.443,-35.5356,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:119:0,119:0:0:119:4260:-383.577,-35.8226,0	1/1:105:0,105:0:0:105:3750:-337.569,-31.6082,0	1/1:265:0,265:0:0:265:9518:-856.572,-79.773,0	1/1:151:0,151:0:0:151:5404:-486.479,-45.4555,0	0/1:95:44,51:44:1584:51:1828:-136.203,0,-114.218	0/1:139:54,85:54:1940:85:3060:-233.782,0,-132.475	0/1:217:86,131:86:3068:131:4707:-358.463,0,-211.019	1/1:60:0,60:0:0:60:2129:-191.877,-18.0618,0	1/1:129:0,129:0:0:129:4619:-415.859,-38.8329,0	1/1:112:0,112:0:0:112:4028:-362.707,-33.7154,0	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	0/1:76:41,35:41:1472:35:1260:-90.8272,0,-109.883	0/1:85:50,35:50:1800:35:1260:-88.1179,0,-136.692	1/1:120:0,120:0:0:120:4300:-387.162,-36.1236,0	1/1:171:0,171:0:0:171:6156:-554.134,-51.4761,0
chr07	24338538	.	G	A	44636.2	PASS	AB=0.519696;ABP=19.8615;AC=47;AF=0.25;AN=188;AO=2617;CIGAR=1X;DP=10780;DPB=10780;DPRA=1.0532;EPP=5677.07;EPPR=17652.8;GTI=1;LEN=1;MEANALT=1.05357;MQM=59.9587;MQMR=59.9912;NS=94;NUMALT=1;ODDS=2.16799;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93338;QR=287745;RO=8156;RPL=2613;RPP=5651.06;RPPR=17600.8;RPR=4;RUN=1;SAF=2614;SAP=5659.73;SAR=3;SRF=8150;SRP=17661.5;SRR=6;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:39,41:39:1384:41:1466:-108.154,0,-100.776	0/1:74:40,34:40:1415:34:1196:-85.6664,0,-105.37	0/1:212:126,86:126:4468:86:3075:-213.16,0,-338.471	0/1:329:169,160:169:5935:160:5728:-416.594,0,-434.855	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:54:54,0:54:1892:0:0:0,-16.2556,-170.556	0/1:142:64,78:64:2255:78:2776:-207.333,0,-160.465	0/0:239:239,0:239:8446:0:0:0,-71.9462,-760.152	0/0:139:138,1:138:4803:1:36:0,-38.2449,-428.833	0/1:106:58,48:58:2052:48:1685:-120.021,0,-153.04	0/0:89:89,0:89:3168:0:0:0,-26.7917,-285.346	0/1:121:71,50:71:2473:50:1774:-123.516,0,-186.4	0/1:88:40,48:40:1375:48:1720:-128.595,0,-97.5498	0/1:65:31,34:31:1076:34:1197:-88.4668,0,-77.5785	0/1:86:37,49:37:1312:49:1764:-133.155,0,-92.4931	0/0:59:59,0:59:2057:0:0:0,-17.7608,-185.398	0/0:37:37,0:37:1275:0:0:0,-11.1381,-115.047	0/0:36:36,0:36:1267:0:0:0,-10.8371,-114.332	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/1:242:154,88:154:5425:88:3164:-212.134,0,-415.534	0/0:196:194,2:194:6861:2:72:0,-52.1652,-610.729	0/0:133:132,0:132:4707:0:0:0,-39.736,-423.431	0/0:186:186,0:186:6594:0:0:0,-55.9916,-593.543	0/0:106:106,0:106:3741:0:0:0,-31.9092,-336.891	0/1:147:81,66:81:2848:66:2322:-164.957,0,-212.307	0/1:400:187,213:187:6650:213:7571:-561.016,0,-478.168	0/0:302:302,0:302:10711:0:0:0,-90.9111,-963.907	0/1:35:11,24:11:388:24:856:-66.8251,0,-24.7213	0/0:332:332,0:332:11714:0:0:0,-99.942,-1054.14	0/1:145:63,81:63:2205:81:2865:-214.506,0,-155.132	0/0:128:127,1:127:4502:1:36:0,-34.9336,-401.754	0/0:8:8,0:8:265:0:0:0,-2.40824,-24.1721	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:11:5,6:5:171:6:205:-15.4723,0,-12.4141	0/1:21:9,12:9:309:12:428:-32.5372,0,-21.8191	0/0:203:203,0:203:7069:0:0:0,-61.1091,-636.288	0/1:142:61,81:61:2156:81:2885:-217.139,0,-151.551	0/1:76:39,37:39:1356:37:1315:-95.7727,0,-99.4572	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:188:94,94:94:3323:94:3364:-246.377,0,-242.695	0/1:37:24,13:24:852:13:464:-30.9594,0,-65.8623	0/1:178:81,97:81:2869:97:3435:-255.78,0,-204.864	0/1:54:22,32:22:788:32:1152:-87.7345,0,-54.9892	0/1:67:29,38:29:1031:38:1351:-101.721,0,-72.9336	0/0:173:172,0:172:6103:0:0:0,-51.7772,-549.012	0/0:98:98,0:98:3469:0:0:0,-29.5009,-312.423	0/1:149:75,74:75:2677:74:2643:-193.263,0,-196.32	0/0:107:107,0:107:3804:0:0:0,-32.2102,-342.558	0/0:125:124,1:124:4427:1:36:0,-34.0305,-395.004	0/0:144:144,0:144:5111:0:0:0,-43.3483,-460.135	0/1:15:5,10:5:176:10:356:-27.8658,0,-11.6696	0/1:158:82,76:82:2935:76:2720:-197.481,0,-216.821	0/0:144:142,1:142:5038:1:32:0,-40.1879,-450.348	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:156:58,98:58:2031:98:3512:-269.329,0,-136.101	0/1:53:20,32:20:708:32:1148:-87.6165,0,-48.0325	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:104:103,0:103:3587:0:0:0,-31.0061,-322.68	0/0:101:101,0:101:3542:0:0:0,-30.404,-318.991	0/1:5:1,4:1:32:4:144:-11.8085,0,-1.69416	0/0:228:228,0:228:8079:0:0:0,-68.6348,-727.131	0/0:165:163,2:163:5770:2:72:0,-42.8332,-512.582	0/1:72:47,25:47:1680:25:900:-59.6469,0,-129.808	0/0:112:108,4:108:3815:4:144:0,-20.4017,-330.233	0/1:230:115,115:115:4085:115:4098:-299.697,0,-298.6	0/1:224:67,157:67:2364:157:5628:-439.207,0,-145.586	0/1:59:23,36:23:788:36:1284:-98.1013,0,-53.4726	0/0:85:85,0:85:3016:0:0:0,-25.5875,-271.67	0/1:48:29,19:29:1044:19:680:-47.0797,0,-79.8254	0/1:52:23,29:23:798:29:1023:-76.7283,0,-56.4831	0/0:144:143,1:143:5031:1:36:0,-39.75,-449.342	0/0:102:102,0:102:3580:0:0:0,-30.7051,-322.408	0/0:220:220,0:220:7749:0:0:0,-66.2266,-697.452	0/0:235:234,1:234:8312:1:36:0,-67.1438,-744.491	0/1:118:64,54:64:2253:54:1931:-138.544,0,-167.511	0/0:62:62,0:62:2196:0:0:0,-18.6639,-197.903	0/0:19:19,0:19:667:0:0:0,-5.71957,-60.3546	0/0:64:64,0:64:2246:0:0:0,-19.2659,-202.401	0/0:164:163,1:163:5685:1:36:0,-45.7706,-508.177	0/0:226:226,0:226:8011:0:0:0,-68.0328,-721.016	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/1:91:39,52:39:1368:52:1860:-140.286,0,-96.022	0/1:50:18,32:18:627:32:1143:-88.1278,0,-41.7029	0/1:134:52,82:52:1829:82:2940:-224.496,0,-124.551	0/0:22:22,0:22:769:0:0:0,-6.62266,-69.5286	0/0:88:88,0:88:3045:0:0:0,-26.4906,-274.28	0/0:80:80,0:80:2795:0:0:0,-24.0824,-251.789	0/1:69:28,41:28:979:41:1459:-110.777,0,-67.651	0/1:169:85,84:85:2938:84:2999:-219.262,0,-213.781	0/1:85:24,61:24:852:61:2180:-170.876,0,-51.4128	0/0:207:206,0:206:7173:0:0:0,-62.0122,-645.395	0/0:100:100,0:100:3538:0:0:0,-30.103,-318.631
chr07	24338559	.	A	G	33582.1	PASS	AB=0.506253;ABP=4.36815;AC=44;AF=0.241758;AN=182;AO=2040;CIGAR=1X;DP=9343;DPB=9343;DPRA=1.01755;EPP=4432.81;EPPR=15817.9;GTI=2;LEN=1;MEANALT=1.09434;MQM=59.9598;MQMR=59.9822;NS=91;NUMALT=1;ODDS=0.19669;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71509;QR=260259;RO=7295;RPL=11;RPP=4337.78;RPPR=15541.4;RPR=2029;RUN=1;SAF=11;SAP=4337.78;SAR=2029;SRF=32;SRP=15567.2;SRR=7263;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:27,25:27:950:25:876:-63.5023,0,-70.1599	0/1:156:72,84:72:2579:84:2952:-218.949,0,-185.398	0/1:86:38,48:38:1364:48:1679:-125.504,0,-97.1721	0/1:199:103,95:103:3671:95:3381:-244.649,0,-270.737	0/0:54:54,0:54:1913:0:0:0,-16.2556,-172.445	0/0:87:87,0:87:3096:0:0:0,-26.1896,-278.866	0/1:137:63,74:63:2249:74:2604:-193.358,0,-161.43	0/0:182:180,2:180:6423:2:72:0,-47.9507,-571.32	0/0:154:154,0:154:5498:0:0:0,-46.3586,-494.947	0/1:85:39,45:39:1395:45:1580:-116.995,0,-100.327	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:74:44,30:44:1554:30:1023:-70.0967,0,-117.874	0/1:77:41,36:41:1468:36:1270:-91.422,0,-109.237	0/1:71:40,31:40:1417:31:1083:-76.4049,0,-106.452	0/1:81:47,34:47:1658:34:1198:-83.7406,0,-125.123	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/0:85:85,0:85:3020:0:0:0,-25.5875,-272.03	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:105:54,51:54:1932:51:1810:-131.572,0,-142.548	0/0:198:198,0:198:7093:0:0:0,-59.6039,-638.427	0/0:36:36,0:36:1268:0:0:0,-10.8371,-114.42	0/0:126:126,0:126:4497:0:0:0,-37.9298,-404.886	0/0:251:250,1:250:8928:1:36:0,-71.9603,-799.904	0/1:88:55,33:55:1948:33:1148:-77.1325,0,-149.103	0/1:484:204,277:204:7264:277:9676:-725.691,0,-508.693	0/0:151:151,0:151:5398:0:0:0,-45.4555,-485.95	0/1:45:24,21:24:864:21:744:-53.738,0,-64.5362	0/0:190:190,0:190:6777:0:0:0,-57.1957,-610.001	0/1:160:85,75:85:3038:75:2644:-190.04,0,-225.484	0/0:151:151,0:151:5406:0:0:0,-45.4555,-486.669	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	.:.:.:.:.:.:.:.	0/0:287:287,0:287:10233:0:0:0,-86.3956,-920.897	0/1:100:56,44:56:1987:44:1529:-107.794,0,-149.001	0/1:60:28,32:28:1004:32:1086:-79.9764,0,-72.6141	.:.:.:.:.:.:.:.	0/1:157:82,74:82:2916:74:2574:-184.586,0,-215.353	0/1:24:14,10:14:504:10:337:-23.43,0,-38.4734	0/1:128:61,67:61:2184:67:2379:-175.836,0,-158.294	0/1:88:52,36:52:1864:36:1271:-88.2015,0,-141.549	0/1:78:42,36:42:1492:36:1230:-87.5165,0,-111.094	0/0:121:121,0:121:4300:0:0:0,-36.4246,-387.175	0/0:135:134,1:134:4795:1:36:0,-37.0408,-428.09	0/1:131:68,63:68:2431:63:2194:-158.282,0,-179.61	0/0:118:117,1:117:4180:1:36:0,-31.9233,-372.782	0/0:116:116,0:116:4154:0:0:0,-34.9195,-374.041	0/0:195:195,0:195:6947:0:0:0,-58.7008,-625.297	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:57:32,25:32:1148:25:883:-62.6287,0,-86.4711	0/0:34:32,1:32:1148:1:36:0,-6.69554,-100.032	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:93:49,44:49:1760:44:1571:-113.685,0,-130.688	0/1:52:26,26:26:921:26:928:-68.1847,0,-67.5516	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:115:114,1:114:4068:1:36:0,-31.0202,-362.707	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:322:322,0:322:11483:0:0:0,-96.9317,-1033.34	0/0:243:238,5:238:8532:5:180:0,-56.5982,-751.322	0/1:77:25,52:25:891:52:1830:-141.8,0,-57.3295	0/0:81:81,0:81:2887:0:0:0,-24.3834,-260.067	0/1:225:105,120:105:3731:120:4215:-311.73,0,-268.258	0/1:81:27,54:27:972:54:1869:-144.099,0,-63.4145	0/1:26:12,14:12:424:14:474:-35.1538,0,-30.6696	0/0:88:88,0:88:3120:0:0:0,-26.4906,-281.02	0/1:81:44,37:44:1562:37:1259:-89.2195,0,-116.487	0/1:25:9,16:9:324:16:568:-43.9261,0,-21.9801	0/0:47:47,0:47:1655:0:0:0,-14.1484,-149.234	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/0:222:222,0:222:7930:0:0:0,-66.8287,-713.669	0/0:135:135,0:135:4810:0:0:0,-40.639,-433.057	0/1:88:36,52:36:1275:52:1824:-137.948,0,-88.5616	0/0:98:97,1:97:3484:1:36:0,-25.9027,-310.172	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.447	0/0:91:91,0:91:3227:0:0:0,-27.3937,-290.647	0/0:106:105,1:105:3759:1:36:0,-28.3109,-334.911	0/0:124:124,0:124:4430:0:0:0,-37.3277,-398.871	0/1:78:45,33:45:1595:33:1163:-81.4943,0,-120.359	0/1:121:60,61:60:2152:61:2136:-156.079,0,-157.523	0/1:147:72,75:72:2560:75:2647:-194.225,0,-186.397	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:93:93,0:93:3278:0:0:0,-27.9958,-295.214	0/0:71:71,0:71:2500:0:0:0,-21.3731,-225.252	0/1:15:10,5:10:332:5:171:-11.21,0,-25.6847	0/1:74:33,41:33:1168:41:1419:-105.725,0,-83.151	0/1:74:33,41:33:1179:41:1456:-109.06,0,-84.141	0/0:200:199,1:199:7126:1:36:0,-56.6077,-637.798	0/0:117:116,0:116:4127:0:0:0,-34.9195,-371.254
chr07	24357984	.	ATGACCTTAGG	ATGACCTTAGA,ATGAACTTAGA	122839	PASS	AB=0.415932,0.572968;ABP=191.038,144.662;AC=136,50;AF=0.731183,0.268817;AN=186;AO=4690,1777;CIGAR=10M1X,4M1X5M1X;DP=6533;DPB=6532.82;DPRA=26.6476,0.884297;EPP=10117.8,3853.04;EPPR=22.5536;GTI=1;LEN=1,11;MEANALT=2.08989,2.42;MQM=45.8883,30.8289;MQMR=50;NS=93;NUMALT=2;ODDS=1.05486;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=166102,53251;QR=308;RO=9;RPL=6,1;RPP=10135.2,3853.04;RPPR=22.5536;RPR=4684,1776;RUN=1,1;SAF=4688,1777;SAP=10169.9,3861.72;SAR=2,0;SRF=9;SRP=22.5536;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:50:0,25,22:0:0:25,22:866,679:-118.383,-48.8184,-41.2926,-69.6063,0,-62.9836	1/2:91:0,37,53:0:0:37,53:1273,1603:-217.473,-115.269,-104.131,-102.266,0,-86.3117	1/2:111:0,21,87:0:0:21,87:744,2655:-251.018,-191.082,-184.76,-60.0015,0,-33.8119	1/2:154:0,61,91:0:0:61,91:2172,2693:-365.919,-190.962,-172.599,-174.953,0,-147.56	1/1:62:0,56,6:0:0:56,6:1945,181:-172.191,-16.8577,0,-159.339,-3.7267,-157.532	1/1:21:0,21,0:0:0:21,0:752,0:-67.2895,-6.32163,0,-67.2895,-6.32163,-67.2895	1/2:68:0,35,33:0:0:35,33:1248,986:-171.702,-71.0619,-60.5259,-100.951,0,-91.0174	1/1:75:0,75,0:0:0:75,0:2646,0:-235.223,-22.5773,0,-235.223,-22.5773,-235.223	1/1:75:0,75,0:0:0:75,0:2665,0:-237.383,-22.5773,0,-237.383,-22.5773,-237.383	1/2:65:0,17,46:0:0:17,46:585,1361:-143.55,-97.121,-92.0034,-46.462,0,-32.6146	1/1:46:0,45,0:0:0:45,0:1608,0:-142.848,-13.5464,0,-142.848,-13.5464,-142.848	1/2:109:0,57,51:0:0:57,51:2017,1555:-273.395,-110.948,-93.7889,-162.407,0,-147.054	1/2:73:0,42,30:0:0:42,30:1508,930:-187.906,-66.4761,-53.8328,-121.391,0,-112.36	1/2:62:0,37,25:0:0:37,25:1328,750:-160.683,-53.7473,-42.6092,-107.24,0,-99.7143	1/2:76:0,35,41:0:0:35,41:1226,1229:-185.343,-88.1179,-77.5818,-97.5345,0,-85.1923	1/1:77:0,77,0:0:0:77,0:2740,0:-243.431,-23.1793,0,-243.431,-23.1793,-243.431	1/1:32:0,32,0:0:0:32,0:1144,0:-102.161,-9.63296,0,-102.161,-9.63296,-102.161	1/1:32:0,31,0:0:0:31,0:1104,0:-98.3345,-9.33193,0,-98.3345,-9.33193,-98.3345	1/1:37:1,36,0:1:34:36,0:1288,0:-111.376,-7.75163,0,-111.677,-10.8371,-114.423	1/2:110:0,43,66:0:0:43,66:1502,1938:-258.308,-137.744,-124.8,-120.595,0,-100.727	1/1:233:0,230,0:0:0:230,0:8178,0:-725.884,-69.2369,0,-725.884,-69.2369,-725.884	1/1:62:0,60,1:0:0:60,1:2155,30:-190.742,-18.0618,0,-188.616,-15.9747,-188.315	1/1:98:2,96,0:2:63:96,0:3370,0:-293.603,-23.5339,0,-294.205,-28.8989,-299.255	1/1:59:0,59,0:0:0:59,0:2104,0:-187.577,-17.7608,0,-187.577,-17.7608,-187.577	1/2:81:0,37,43:0:0:37,43:1282,1289:-194.86,-91.9289,-80.7908,-102.979,0,-90.0348	1/2:136:0,46,90:0:0:46,90:1629,2719:-325.321,-194.826,-180.979,-130.818,0,-103.726	1/1:257:1,255,0:1:35:255,0:9046,0:-800.064,-73.8794,0,-800.365,-76.7627,-803.199	1/2:36:0,18,18:0:0:18,18:629,537:-88.5398,-38.3067,-32.8882,-50.5389,0,-45.1203	1/1:173:0,171,0:0:0:171,0:6051,0:-537.511,-51.4761,0,-537.511,-51.4761,-537.511	1/2:71:0,28,43:0:0:28,43:996,1283:-171.543,-91.3778,-82.9489,-80.4842,0,-67.5399	1/1:55:0,55,0:0:0:55,0:1953,0:-173.871,-16.5567,0,-173.871,-16.5567,-173.871	.:.:.:.:.:.:.:.	1/1:6:0,6,0:0:0:6,0:197,0:-17.8898,-1.80618,0,-17.8898,-1.80618,-17.8898	1/2:8:0,1,6:0:0:1,6:36,186:-16.2838,-13.4049,-13.1039,-2.95981,0,-1.15363	2/2:5:0,0,5:0:0:0,5:0,145:-12.1951,-12.1951,-12.1951,-1.50515,-1.50515,0	1/2:14:0,7,7:0:0:7,7:252,207:-35.4859,-15.1305,-13.0233,-20.6679,0,-18.5607	1/1:216:0,215,0:0:0:215,0:7659,0:-678.626,-64.7215,0,-678.626,-64.7215,-678.626	1/2:39:0,17,22:0:0:17,22:604,658:-96.0801,-47.4066,-42.2891,-48.9901,0,-42.3674	1/2:52:2,24,26:2:72:24,26:860,806:-120.32,-51.7369,-50.3751,-63.2868,0,-61.3177	2/2:1:0,0,1:0:0:0,1:0,30:-2.69919,-2.69919,-2.69919,-0.30103,-0.30103,0	1/2:69:0,22,47:0:0:22,47:788,1411:-163.692,-100.387,-93.7647,-63.6314,0,-49.483	1/2:31:0,19,12:0:0:19,12:676,366:-81.1279,-26.6255,-20.9059,-54.8087,0,-51.1963	1/2:93:2,31,59:2:68:31,59:1097,1735:-205.884,-118.191,-114.352,-82.7834,0,-70.5131	1/2:56:0,26,30:0:0:26,30:923,891:-137.868,-63.5296,-55.7029,-74.651,0,-65.6201	1/2:77:1,31,45:1:36:31,45:1100,1367:-182.278,-94.8415,-88.4264,-84.7835,0,-74.1525	1/1:64:0,62,0:0:0:62,0:2182,0:-193.787,-18.6639,0,-193.787,-18.6639,-193.787	1/1:56:0,53,2:0:0:53,2:1878,62:-166.684,-15.9546,0,-162.25,-11.4714,-161.648	1/2:98:0,30,67:0:0:30,67:1076,1999:-228.5,-141.823,-132.792,-86.7209,0,-66.5519	1/1:74:0,74,0:0:0:74,0:2644,0:-235.067,-22.2762,0,-235.067,-22.2762,-235.067	1/1:58:0,56,2:0:0:56,2:2000,60:-176.264,-16.8577,0,-172.01,-12.3313,-171.408	1/1:88:0,87,0:0:0:87,0:3067,0:-272.095,-26.1896,0,-272.095,-26.1896,-272.095	1/2:6:0,4,2:0:0:4,2:144,60:-16.1561,-4.5264,-3.32228,-11.928,0,-11.3259	1/2:92:0,17,75:0:0:17,75:608,2281:-213.108,-164.157,-159.04,-49.2903,0,-26.713	1/1:51:0,51,0:0:0:51,0:1786,0:-158.698,-15.3525,0,-158.698,-15.3525,-158.698	1/1:1:0,1,0:0:0:1,0:36,0:-3.55862,-0.30103,0,-3.55862,-0.30103,-3.55862	1/2:93:0,46,47:0:0:46,47:1628,1405:-232.062,-100.836,-86.9888,-131.537,0,-117.388	1/2:47:0,17,30:0:0:17,30:589,874:-109.322,-61.9967,-56.8792,-47.639,0,-38.6081	2/2:2:0,0,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chr07	24415914	.	C	T	52282.6	PASS	AB=0.611133;ABP=538.747;AC=49;AF=0.260638;AN=188;AO=3076;CIGAR=1X;DP=9051;DPB=9051;DPRA=1.2977;EPP=6673.78;EPPR=12960.2;GTI=6;LEN=1;MEANALT=1.05556;MQM=59.9603;MQMR=59.9496;NS=94;NUMALT=1;ODDS=0.701458;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107047;QR=209396;RO=5971;RPL=3075;RPP=6673.78;RPPR=12960.2;RPR=1;RUN=1;SAF=3076;SAP=6682.46;SAR=0;SRF=5971;SRP=12968.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:3,21:3:93:21:744:-60.0596,0,-1.45201	0/1:128:36,92:36:1272:92:3207:-250.324,0,-76.251	0/1:92:32,60:32:1123:60:2123:-163.644,0,-73.6824	0/1:332:130,202:130:4607:202:7138:-542.352,0,-314.852	0/0:22:21,1:21:747:1:32:0,-3.42335,-64.355	0/0:36:36,0:36:1256:0:0:0,-10.8371,-113.339	0/1:139:61,78:61:2126:78:2704:-201.759,0,-149.76	0/0:131:131,0:131:4608:0:0:0,-39.4349,-414.885	0/0:50:50,0:50:1756:0:0:0,-15.0515,-158.321	0/1:165:59,106:59:2075:106:3696:-283.174,0,-137.348	0/0:46:46,0:46:1603:0:0:0,-13.8474,-144.556	0/1:84:36,48:36:1228:48:1590:-118.092,0,-85.5287	0/1:102:48,54:48:1683:54:1853:-136.343,0,-121.048	0/1:85:43,42:43:1456:42:1402:-100.879,0,-105.737	0/1:95:56,39:56:1918:39:1371:-95.0899,0,-144.291	0/0:71:71,0:71:2480:0:0:0,-21.3731,-223.451	0/0:85:85,0:85:2950:0:0:0,-25.5875,-265.734	0/0:70:70,0:70:2440:0:0:0,-21.0721,-219.853	0/0:34:34,0:34:1145:0:0:0,-10.235,-103.343	0/1:160:55,105:55:1936:105:3700:-285.038,0,-126.349	0/0:140:140,0:140:4950:0:0:0,-42.1442,-445.583	0/0:78:78,0:78:2722:0:0:0,-23.4803,-245.224	0/0:155:155,0:155:5423:0:0:0,-46.6596,-488.073	0/0:52:52,0:52:1809:0:0:0,-15.6536,-163.087	0/1:32:7,25:7:248:25:871:-69.0707,0,-13.0312	0/1:356:94,261:94:3284:261:9130:-714.618,0,-188.702	0/0:120:120,0:120:4214:0:0:0,-36.1236,-379.442	0/1:44:27,17:27:925:17:581:-39.3652,0,-70.314	0/0:194:194,0:194:6849:0:0:0,-58.3998,-616.488	0/1:207:92,113:92:3266:113:3947:-293.375,0,-232.023	0/0:181:179,2:179:6317:2:72:0,-47.6497,-561.785	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/1:13:4,9:4:140:9:315:-24.7738,0,-9.03119	0/1:4:3,1:3:104:1:32:-1.99519,0,-8.49869	0/1:18:12,6:12:428:6:207:-13.5484,0,-33.4403	0/0:244:243,1:243:8459:1:36:0,-69.853,-757.732	0/1:250:81,169:81:2892:169:5876:-453.703,0,-185.259	0/1:70:34,36:34:1185:36:1223:-89.2965,0,-85.8806	0/1:10:3,7:3:104:7:252:-20.0187,0,-6.69251	0/1:194:70,124:70:2451:124:4322:-330.759,0,-162.441	0/1:40:21,19:21:733:19:654:-47.1389,0,-54.2485	0/1:165:35,130:35:1232:130:4495:-354.984,0,-61.5113	0/1:115:59,56:59:2042:56:1927:-139.086,0,-149.431	0/1:74:43,31:43:1523:31:1062:-73.6092,0,-115.086	0/0:68:68,0:68:2374:0:0:0,-20.47,-213.904	0/0:66:66,0:66:2335:0:0:0,-19.868,-210.407	0/1:219:50,169:50:1771:169:5882:-463.573,0,-93.7469	0/0:102:102,0:102:3593:0:0:0,-30.7051,-322.944	0/0:99:99,0:99:3486:0:0:0,-29.802,-313.952	0/0:81:80,1:80:2844:1:36:0,-20.7852,-252.599	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/1:111:39,72:39:1373:72:2555:-196.785,0,-90.4523	0/1:133:62,71:62:2199:71:2531:-188.004,0,-158.138	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/1:128:38,90:38:1328:90:3138:-244.116,0,-81.2848	0/1:53:19,34:19:659:34:1186:-91.0887,0,-43.6777	0/1:10:6,4:6:216:4:135:-9.47221,0,-16.7802	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:76:76,0:76:2629:0:0:0,-22.8783,-236.855	0/0:116:116,0:116:4063:0:0:0,-34.9195,-365.86	1/1:14:0,14:0:0:14:486:-44.0438,-4.21442,0	0/0:213:213,0:213:7515:0:0:0,-64.1194,-676.394	0/0:113:109,4:109:3832:4:144:0,-20.7028,-331.764	0/1:112:36,76:36:1279:76:2680:-207.729,0,-81.6971	0/0:83:83,0:83:2937:0:0:0,-24.9855,-264.562	0/1:322:107,215:107:3736:215:7496:-577.768,0,-239.513	0/1:79:24,55:24:839:55:1916:-148.931,0,-52.0459	0/1:21:15,6:15:506:6:212:-13.1032,0,-39.5387	0/0:62:62,0:62:2164:0:0:0,-18.6639,-195.023	0/1:80:37,43:37:1309:43:1463:-107.877,0,-94.0271	0/1:13:7,6:7:234:6:216:-15.8771,0,-17.4726	0/0:68:68,0:68:2411:0:0:0,-20.47,-217.247	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:97:97,0:97:3400:0:0:0,-29.1999,-305.946	0/0:130:130,0:130:4579:0:0:0,-39.1339,-412.278	0/1:113:39,74:39:1373:74:2566:-197.17,0,-88.8283	0/0:120:120,0:120:4236:0:0:0,-36.1236,-381.422	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:100:100,0:100:3561:0:0:0,-30.103,-320.698	0/0:93:93,0:93:3260:0:0:0,-27.9958,-293.621	0/0:113:111,1:111:3927:1:36:0,-30.4769,-350.025	0/0:85:85,0:85:2988:0:0:0,-25.5875,-269.153	0/1:69:38,31:38:1321:31:1040:-73.1284,0,-98.4162	0/1:102:56,46:56:1944:46:1547:-108.809,0,-144.521	0/1:145:81,64:81:2771:64:2202:-154.795,0,-205.979	0/1:33:18,15:18:622:15:507:-36.0176,0,-46.3681	0/0:97:97,0:97:3420:0:0:0,-29.1999,-308.016	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.977	0/1:44:27,17:27:964:17:600:-41.0839,0,-73.8315	0/1:88:56,32:56:1919:32:1132:-75.6979,0,-146.489	0/1:110:36,74:36:1203:74:2531:-194.931,0,-75.4503	0/0:46:46,0:46:1617:0:0:0,-13.8474,-145.817	0/0:129:129,0:129:4415:0:0:0,-38.8329,-397.526
chr07	24415995	.	G	A	32704.9	PASS	AB=0.545663;ABP=66.2715;AC=48;AF=0.255319;AN=188;AO=1917;CIGAR=1X;DP=7035;DPB=7035;DPRA=1.08965;EPP=4165.72;EPPR=11105.8;GTI=0;LEN=1;MEANALT=1;MQM=59.9285;MQMR=59.9902;NS=94;NUMALT=1;ODDS=4.46334;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68213;QR=182029;RO=5117;RPL=0;RPP=4165.72;RPPR=11105.8;RPR=1917;RUN=1;SAF=0;SAP=4165.72;SAR=1917;SRF=0;SRP=11114.4;SRR=5117;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:27,36:27:940:36:1284:-96.8985,0,-65.9459	0/1:63:26,37:26:923:37:1324:-100.497,0,-64.4219	0/1:89:33,56:33:1180:56:2012:-154.561,0,-78.7639	0/1:94:36,58:36:1262:58:2042:-155.75,0,-85.5841	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:34:34,0:34:1197:0:0:0,-10.235,-108.033	0/1:100:44,56:44:1572:56:1991:-149.361,0,-111.669	0/0:99:99,0:99:3522:0:0:0,-29.802,-317.19	0/0:106:102,4:102:3583:4:144:0,-18.5956,-309.361	0/1:58:26,32:26:910:32:1148:-86.1677,0,-64.7543	0/0:90:90,0:90:3214:0:0:0,-27.0927,-289.482	0/1:120:66,54:66:2341:54:1924:-137.313,0,-174.825	0/1:91:51,40:51:1797:40:1428:-101.424,0,-134.616	0/1:91:50,41:50:1792:41:1444:-102.859,0,-134.169	0/1:92:54,38:54:1940:38:1338:-93.0237,0,-147.181	0/0:90:90,0:90:3171:0:0:0,-27.0927,-285.612	0/0:25:25,0:25:859:0:0:0,-7.52575,-77.6207	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:47:47,0:47:1654:0:0:0,-14.1484,-149.146	0/1:78:25,53:25:900:53:1900:-147.798,0,-57.8407	0/0:165:165,0:165:5866:0:0:0,-49.6699,-528.05	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:133:51,82:51:1812:82:2917:-222.726,0,-123.323	0/1:160:72,88:72:2562:88:3160:-236.459,0,-182.665	0/0:178:177,1:177:6324:1:36:0,-49.9851,-565.653	0/1:30:19,11:19:669:11:396:-26.9518,0,-51.503	0/0:135:134,0:134:4758:0:0:0,-40.338,-428.016	0/1:93:39,54:39:1404:54:1936:-146.521,0,-98.6635	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:37:21,16:21:752:16:561:-39.679,0,-56.8681	0/1:53:37,16:37:1324:16:564:-34.762,0,-103.508	0/0:178:178,0:178:6338:0:0:0,-53.5833,-570.512	0/1:120:67,53:67:2387:53:1877:-133.072,0,-178.964	0/1:84:39,45:39:1388:45:1603:-119.273,0,-99.9324	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:69:32,37:32:1127:37:1309:-97.3385,0,-80.9664	0/1:38:24,14:24:845:14:500:-33.897,0,-64.928	0/1:149:77,72:77:2731:72:2563:-186.067,0,-201.178	0/1:32:17,15:17:608:15:517:-37.1973,0,-45.4191	0/1:38:19,19:19:659:19:684:-50.4512,0,-48.1932	0/0:93:92,1:92:3291:1:36:0,-24.3975,-292.811	0/0:53:53,0:53:1874:0:0:0,-15.9546,-168.938	0/1:124:47,77:47:1680:77:2741:-209.59,0,-114.159	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:76:76,0:76:2692:0:0:0,-22.8783,-242.524	0/0:100:100,0:100:3540:0:0:0,-30.103,-318.807	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	0/1:59:25,34:25:900:34:1216:-91.9858,0,-63.5602	0/1:60:29,31:29:1023:31:1112:-82.3295,0,-74.3199	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:76:25,51:25:881:51:1814:-140.662,0,-56.7276	0/1:51:15,36:15:528:36:1288:-100.871,0,-32.4988	0/1:10:3,7:3:104:7:248:-19.6539,0,-6.69251	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.317	0/0:91:91,0:91:3224:0:0:0,-27.3937,-290.382	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:168:165,3:165:5896:3:108:0,-40.4979,-520.673	0/1:89:39,50:39:1377:50:1781:-133.722,0,-97.435	0/0:38:38,0:38:1340:0:0:0,-11.4391,-120.897	0/1:120:46,74:46:1656:74:2621:-200.014,0,-113.205	0/1:124:32,92:32:1148:92:3286:-258.63,0,-66.3021	0/1:39:18,21:18:644:21:748:-55.9051,0,-46.5504	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:45:31,14:31:1116:14:504:-32.1517,0,-87.2053	0/1:15:8,7:8:288:7:248:-18.1464,0,-21.752	0/0:190:190,0:190:6722:0:0:0,-57.1957,-605.062	0/0:92:92,0:92:3276:0:0:0,-27.6948,-295.059	0/0:133:133,0:133:4735:0:0:0,-40.037,-426.308	0/0:103:103,0:103:3680:0:0:0,-31.0061,-331.401	0/1:67:25,42:25:881:42:1483:-113.594,0,-59.4369	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5607	0/0:54:54,0:54:1907:0:0:0,-16.2556,-171.904	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:130:130,0:130:4640:0:0:0,-39.1339,-417.762	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/1:79:31,48:31:1107:48:1724:-131.664,0,-76.1588	0/1:43:19,24:19:676:24:856:-64.4168,0,-48.2237	0/1:135:66,69:66:2335:69:2451:-180.204,0,-169.768	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:71:71,0:71:2526:0:0:0,-21.3731,-227.591	0/0:81:80,1:80:2864:1:36:0,-20.7852,-254.399	0/1:103:58,45:58:2066:45:1566:-110.221,0,-155.204	0/1:176:79,97:79:2782:97:3420:-255.032,0,-197.638	0/1:48:14,34:14:495:34:1212:-94.9369,0,-30.4336	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:69:68,1:68:2387:1:36:0,-17.1728,-211.485
chr07	24416010	.	A	G	33534.6	PASS	AB=0.552137;ABP=85.8826;AC=48;AF=0.255319;AN=188;AO=1947;CIGAR=1X;DP=7047;DPB=7047;DPRA=1.1237;EPP=4196.19;EPPR=11001.6;GTI=0;LEN=1;MEANALT=1.03846;MQM=59.9122;MQMR=59.9922;NS=94;NUMALT=1;ODDS=5.26858;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69194;QR=182641;RO=5097;RPL=1943;RPP=4196.19;RPPR=11001.6;RPR=4;RUN=1;SAF=0;SAP=4230.87;SAR=1947;SRF=0;SRP=11071;SRR=5097;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:27,36:27:959:36:1284:-96.8985,0,-67.6605	0/1:64:26,38:26:932:38:1364:-103.794,0,-64.9329	0/1:88:31,56:31:1108:56:1950:-149.311,0,-72.63	0/1:97:36,61:36:1288:61:2162:-165.641,0,-87.0237	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:98:44,54:44:1584:54:1920:-143.576,0,-113.351	0/0:95:95,0:95:3401:0:0:0,-28.5978,-306.303	0/0:105:101,4:101:3605:4:144:0,-18.2945,-311.342	0/1:56:25,31:25:900:31:1116:-83.894,0,-64.4633	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82	0/1:122:66,56:66:2356:56:2000:-143.548,0,-175.573	0/1:92:54,38:54:1928:38:1352:-94.2856,0,-146.102	0/1:88:49,39:49:1764:39:1384:-98.3682,0,-132.553	0/1:90:53,37:53:1908:37:1324:-92.3694,0,-144.905	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:80:26,54:26:932:54:1927:-149.624,0,-60.1165	0/0:163:163,0:163:5821:0:0:0,-49.0679,-524.003	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:139:52,87:52:1868:87:3096:-237.014,0,-126.551	0/1:163:73,90:73:2616:90:3198:-238.977,0,-186.62	0/0:177:176,1:176:6303:1:36:0,-49.684,-563.763	0/1:29:19,10:19:680:10:360:-24.0144,0,-52.7993	0/0:136:136,0:136:4888:0:0:0,-40.9401,-440.07	0/1:93:39,54:39:1404:54:1922:-145.26,0,-98.6635	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:18:9,9:9:324:9:302:-22.0874,0,-24.0873	0/1:35:21,14:21:752:14:486:-33.5319,0,-57.4702	0/1:55:37,18:37:1320:18:633:-40.2441,0,-102.545	0/0:177:177,0:177:6352:0:0:0,-53.2823,-571.769	0/1:116:65,51:65:2328:51:1828:-129.881,0,-174.86	0/1:85:38,47:38:1368:47:1661:-124.187,0,-97.8333	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:70:30,40:30:1072:40:1405:-105.673,0,-75.7204	0/1:39:24,15:24:864:15:532:-36.4729,0,-66.3424	0/1:148:77,71:77:2759:71:2514:-181.96,0,-203.998	0/1:33:17,16:17:608:16:567:-41.4274,0,-45.118	0/1:37:18,19:18:648:19:680:-50.3911,0,-47.5138	0/0:93:92,0:92:3287:0:0:0,-27.6948,-295.818	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:125:48,77:48:1720:77:2742:-209.383,0,-117.457	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:59:24,35:24:864:35:1252:-95.2243,0,-60.3218	0/1:62:28,34:28:1008:34:1203:-89.9112,0,-72.3725	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:71:24,46:24:860:46:1639:-126.366,0,-56.29	0/1:49:14,35:14:504:35:1256:-98.5948,0,-30.9476	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.078	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.924	0/0:173:170,3:170:6080:3:108:0,-42.003,-537.228	0/1:88:37,51:37:1324:51:1809:-136.592,0,-92.9715	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:126:46,80:46:1622:80:2851:-218.879,0,-108.335	0/1:126:30,96:30:1076:96:3382:-266.666,0,-59.2231	0/1:40:18,22:18:648:22:788:-59.2036,0,-46.6107	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:45:31,14:31:1091:14:491:-30.9748,0,-84.9524	0/1:16:8,8:8:288:8:279:-20.6308,0,-21.4509	0/0:189:189,0:189:6771:0:0:0,-56.8947,-609.462	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/0:135:134,1:134:4803:1:36:0,-37.0408,-428.826	0/0:104:104,0:104:3719:0:0:0,-31.3071,-334.911	0/1:69:24,45:24:864:45:1603:-123.787,0,-57.3115	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:130:130,0:130:4676:0:0:0,-39.1339,-420.999	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:79:32,47:32:1152:47:1663:-126.175,0,-80.2088	0/1:42:18,24:18:648:24:855:-64.6269,0,-46.0086	0/1:132:61,71:61:2184:71:2548:-189.834,0,-157.09	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:106:59,47:59:2101:47:1661:-117.863,0,-157.449	0/1:178:79,99:79:2832:99:3513:-262.796,0,-201.535	0/1:49:14,35:14:504:35:1252:-98.2346,0,-30.9476	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.102
chr07	24437429	.	T	C	285099	PASS	AB=0.494152;ABP=5.01654;AC=139;AF=0.739362;AN=188;AO=10833;CIGAR=1X;DP=14275;DPB=14275;DPRA=153.484;EPP=3078.49;EPPR=1129.01;GTI=3;LEN=1;MEANALT=1.05376;MQM=59.9817;MQMR=59.9855;NS=94;NUMALT=1;ODDS=0.57264;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=383326;QR=121655;RO=3437;RPL=21;RPP=23344.5;RPPR=7328.03;RPR=10812;RUN=1;SAF=7396;SAP=3144.8;SAR=3437;SRF=2402;SRP=1183.63;SRR=1035;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:29,24:29:1044:24:847:-60.5941,0,-78.3202	0/1:199:90,109:90:3214:109:3833:-285.266,0,-229.577	0/1:127:71,56:71:2536:56:1984:-140.604,0,-190.261	0/1:370:170,200:170:6016:200:7034:-521.752,0,-430.173	1/1:76:0,76:0:0:76:2695:-242.795,-22.8783,0	1/1:74:0,73:0:0:73:2603:-234.158,-21.9752,0	0/1:179:90,89:90:3175:89:3176:-232.181,0,-232.093	1/1:128:0,128:0:0:128:4528:-407.69,-38.5318,0	1/1:134:0,134:0:0:134:4725:-425.414,-40.338,0	0/1:266:121,145:121:4240:145:5123:-381.144,0,-301.226	1/1:149:1,148:1:32:148:5237:-468.274,-41.6542,0	0/1:107:50,57:50:1796:57:1994:-147.521,0,-129.712	0/1:120:67,53:67:2404:53:1866:-132.094,0,-180.493	0/1:69:37,32:37:1332:32:1123:-80.6067,0,-99.4113	0/1:198:99,99:99:3496:99:3531:-258.396,0,-255.251	1/1:90:0,90:0:0:90:3195:-287.775,-27.0927,0	1/1:77:0,77:0:0:77:2666:-240.186,-23.1793,0	1/1:77:0,77:0:0:77:2707:-243.874,-23.1793,0	1/1:84:1,83:1:36:83:2929:-260.247,-21.6882,0	0/1:343:183,160:183:6471:160:5670:-407.169,0,-479.233	1/1:169:0,168:0:0:168:5861:-527.254,-50.573,0	1/1:94:0,94:0:0:94:3327:-299.649,-28.2968,0	1/1:146:1,145:1:36:145:5084:-454.115,-40.3521,0	1/1:141:0,141:0:0:141:4961:-446.639,-42.4452,0	0/1:70:40,30:40:1432:30:1056:-74.2788,0,-108.101	0/1:571:289,281:289:10144:281:9938:-722.424,0,-740.97	1/1:240:0,240:0:0:240:8488:-763.932,-72.2472,0	0/1:42:21,21:21:756:21:732:-53.5561,0,-55.724	1/1:423:1,422:1:36:422:14899:-1337.06,-123.737,0	0/1:110:54,56:54:1936:56:1963:-143.83,0,-141.403	1/1:287:2,285:2:72:285:10083:-900.582,-79.5589,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:17:7,10:7:252:10:348:-26.5367,0,-17.9114	1/1:418:0,418:0:0:418:14776:-1329.6,-125.831,0	0/1:88:52,36:52:1856:36:1268:-87.9315,0,-140.829	0/1:82:28,54:28:1000:54:1916:-148.033,0,-65.6309	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:172:87,85:87:3099:85:3003:-218.727,0,-227.361	0/1:58:31,27:31:1107:27:968:-69.9776,0,-82.4804	0/1:142:72,70:72:2566:70:2479:-180.618,0,-188.443	0/1:219:106,113:106:3760:113:4017:-295.794,0,-272.677	0/1:169:83,86:83:2920:86:3045:-223.407,0,-212.165	1/1:168:0,168:0:0:168:5937:-534.443,-50.573,0	1/1:91:0,91:0:0:91:3208:-288.944,-27.3937,0	0/1:294:158,136:158:5544:136:4809:-344.467,0,-410.596	1/1:211:1,210:1:36:210:7484:-670.003,-59.9191,0	1/1:287:0,287:0:0:287:10222:-919.915,-86.3956,0	1/1:291:0,291:0:0:291:10311:-927.923,-87.5997,0	0/1:24:9,15:9:312:15:528:-40.6266,0,-21.1906	0/1:153:73,80:73:2619:80:2796:-205.767,0,-189.899	0/1:75:42,33:42:1496:33:1176:-83.5705,0,-112.357	1/1:13:0,13:0:0:13:442:-40.1043,-3.91339,0	0/1:155:86,69:86:3083:69:2469:-175.804,0,-231.037	0/1:97:56,41:56:1988:41:1459:-102.405,0,-149.995	0/1:22:12,10:12:424:10:356:-25.7586,0,-31.8738	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:57:0,57:0:0:57:2011:-181.263,-17.1587,0	1/1:225:1,224:1:36:224:7911:-708.427,-64.1335,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:264:0,264:0:0:264:9402:-846.147,-79.4719,0	1/1:395:3,391:3:104:391:13886:-1239.82,-109.17,0	0/1:61:32,29:32:1131:29:1014:-73.2072,0,-83.7349	1/1:167:0,167:0:0:167:5955:-536.058,-50.272,0	0/1:354:164,190:164:5712:190:6744:-500.476,0,-407.595	0/1:244:157,87:157:5527:87:3087:-204.608,0,-424.115	0/1:43:18,25:18:644:25:866:-65.3096,0,-45.3463	1/1:103:0,103:0:0:103:3650:-328.706,-31.0061,0	0/1:193:108,85:108:3785:85:3015:-213.484,0,-282.753	0/1:46:14,32:14:496:32:1131:-88.251,0,-31.1269	1/1:102:0,102:0:0:102:3610:-325.108,-30.7051,0	1/1:80:0,80:0:0:80:2804:-252.601,-24.0824,0	1/1:208:2,206:2:72:206:7237:-644.551,-55.7775,0	1/1:348:2,346:2:72:346:12238:-1094.44,-97.9217,0	0/1:91:44,47:44:1580:47:1654:-121.752,0,-115.098	1/1:171:1,170:1:36:170:6037:-539.837,-47.8779,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:140:0,139:0:0:139:4893:-440.167,-41.8432,0	1/1:89:0,89:0:0:89:3142:-282.875,-26.7917,0	1/1:400:0,400:0:0:400:14230:-1280.47,-120.412,0	1/1:198:1,197:1:36:197:6939:-620.988,-56.0057,0	0/1:137:73,64:73:2556:64:2271:-163.411,0,-189.052	0/1:255:131,124:131:4600:124:4361:-315.905,0,-337.412	0/1:349:158,191:158:5563:191:6792:-506.297,0,-395.746	0/1:52:24,28:24:864:28:983:-73.129,0,-62.429	1/1:103:0,103:0:0:103:3635:-327.358,-31.0061,0	1/1:95:0,95:0:0:95:3367:-303.248,-28.5979,0	0/1:78:33,45:33:1188:45:1612:-121.89,0,-83.7483	0/1:92:44,48:44:1567:48:1696:-125.231,0,-113.626	0/1:149:93,56:93:3320:56:2008:-136.14,0,-254.166	1/1:183:2,181:2:72:181:6439:-572.765,-48.2518,0	1/1:274:1,273:1:36:273:9730:-872.056,-78.8839,0
chr07	24529569	.	C	A	145304	PASS	AB=0.469254;ABP=38.128;AC=141;AF=0.75;AN=188;AO=6939;CIGAR=1X;DP=9234;DPB=9234;DPRA=0;EPP=15070.9;EPPR=4899.99;GTI=1;LEN=1;MEANALT=1.04255;MQM=50.546;MQMR=59.9852;NS=94;NUMALT=1;ODDS=0.19128;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=248303;QR=81650;RO=2291;RPL=0;RPP=15070.9;RPPR=4899.99;RPR=6939;RUN=1;SAF=6939;SAP=15070.9;SAR=0;SRF=2291;SRP=4977.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:138:76,62:76:2716:62:2220:-158.5,0,-203.124	0/1:202:120,82:120:4275:82:2925:-202.676,0,-324.121	1/1:201:0,201:0:0:201:7192:-641.278,-60.507,0	1/1:36:1,35:1:32:35:1248:-108.272,-7.63777,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:111:61,50:61:2173:50:1785:-126.268,0,-162.42	1/1:163:0,163:0:0:163:5825:-524.34,-49.0679,0	1/1:74:0,74:0:0:74:2664:-240.005,-22.2762,0	0/1:147:69,78:69:2468:78:2783:-204.028,0,-178.123	1/1:70:0,70:0:0:70:2482:-221.002,-21.0721,0	0/1:55:25,30:25:900:30:1064:-79.5145,0,-64.7644	0/1:79:39,40:39:1387:40:1440:-106.116,0,-101.347	0/1:87:45,42:45:1582:42:1512:-109.163,0,-116.479	0/1:63:39,24:39:1392:24:864:-58.4753,0,-106.614	1/1:40:1,39:1:36:39:1400:-121.566,-8.44293,0	1/1:89:0,89:0:0:89:3184:-286.637,-26.7917,0	1/1:75:0,75:0:0:75:2678:-241.265,-22.5773,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	0/1:217:110,107:110:3932:107:3826:-275.844,0,-288.75	1/1:120:0,120:0:0:120:4304:-383.342,-36.1236,0	1/1:108:0,108:0:0:108:3872:-343.352,-32.5112,0	1/1:64:0,64:0:0:64:2292:-204.408,-19.2659,0	1/1:78:0,78:0:0:78:2796:-249.026,-23.4803,0	0/1:52:25,27:25:896:27:968:-70.7432,0,-65.3068	0/1:347:164,183:164:5851:183:6517:-474.004,0,-422.246	1/1:169:0,169:0:0:169:6049:-538.454,-50.8741,0	0/1:36:18,18:18:648:18:644:-46.4623,0,-47.8148	1/1:264:0,264:0:0:264:9458:-841.357,-79.4719,0	0/1:100:49,51:49:1706:51:1831:-133.271,0,-123.721	1/1:77:2,75:2:72:75:2688:-232.891,-16.3426,0	1/1:2:0,2:0:0:2:72:-6.77694,-0.60206,0	1/1:10:0,10:0:0:10:360:-32.458,-3.0103,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:221:0,221:0:0:221:7912:-703.641,-66.5276,0	0/1:209:129,80:129:4591:80:2838:-190.673,0,-350.396	0/1:52:28,24:28:999:24:860:-62.0683,0,-74.5709	0/1:5:3,2:3:108:2:72:-5.27179,0,-8.57002	0/1:144:84,60:84:2996:60:2152:-148.608,0,-226.524	1/1:36:0,36:0:0:36:1296:-116.035,-10.8371,0	0/1:165:102,63:102:3620:63:2249:-150.688,0,-276.336	0/1:93:34,59:34:1224:59:2116:-160.288,0,-82.4713	0/1:60:27,33:27:963:33:1170:-86.209,0,-68.9241	1/1:86:0,86:0:0:86:3084:-273.323,-25.8886,0	1/1:92:0,92:0:0:92:3273:-294.79,-27.6948,0	0/1:230:141,88:141:5036:88:3139:-210.25,0,-384.089	1/1:106:0,106:0:0:106:3774:-336.863,-31.9092,0	1/1:229:0,229:0:0:229:8186:-728.713,-68.9359,0	1/1:115:0,114:0:0:114:4080:-362.067,-34.3174,0	0/1:17:3,14:3:99:14:502:-39.5656,0,-4.11907	0/1:151:83,68:83:2976:68:2441:-174.489,0,-222.617	0/1:91:39,52:39:1392:52:1845:-136.755,0,-98.1853	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:172:86,86:86:3056:86:3088:-223.437,0,-223.494	0/1:45:23,22:23:812:22:784:-56.8306,0,-59.8546	0/0:15:14,1:14:500:1:36:0,-0.956833,-41.7776	1/1:14:0,14:0:0:14:504:-44.8579,-4.21442,0	1/1:48:0,48:0:0:48:1722:-154.13,-14.4494,0	1/1:82:0,82:0:0:82:2948:-262.547,-24.6845,0	0/1:4:2,2:2:72:2:68:-5.23281,0,-5.6326	1/1:330:0,330:0:0:330:11722:-1039.82,-99.3399,0	1/1:164:4,160:4:144:160:5740:-498.363,-36.0553,0	0/1:34:18,16:18:639:16:576:-41.5408,0,-47.6032	1/1:68:0,68:0:0:68:2428:-216.74,-20.47,0	0/1:149:94,55:94:3368:55:1972:-130.575,0,-258.482	0/1:119:78,41:78:2787:41:1467:-95.0771,0,-215.248	0/1:25:10,15:10:360:15:540:-41.0685,0,-25.2186	1/1:95:0,95:0:0:95:3382:-304.593,-28.5979,0	0/1:96:36,60:36:1288:60:2156:-163.044,0,-87.3247	0/1:15:7,8:7:252:8:283:-20.9338,0,-18.5135	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:81:0,81:0:0:81:2908:-261.638,-24.3834,0	1/1:103:0,103:0:0:103:3696:-329.955,-31.0061,0	1/1:146:0,146:0:0:146:5224:-465.357,-43.9504,0	0/1:184:123,61:123:4376:61:2184:-141.436,0,-338.627	1/1:141:0,141:0:0:141:5076:-456.981,-42.4452,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:130:0,130:0:0:130:4672:-416.902,-39.1339,0	1/1:166:0,166:0:0:166:5955:-536.031,-49.971,0	1/1:164:0,164:0:0:164:5865:-523.175,-49.3689,0	1/1:92:0,92:0:0:92:3308:-295.079,-27.6948,0	0/1:72:32,40:32:1143:40:1440:-106.679,0,-81.5045	0/1:117:60,56:60:2128:56:2000:-143.504,0,-156.51	0/1:134:52,82:52:1839:82:2937:-221.192,0,-125.452	0/1:37:15,22:15:536:22:792:-60.4676,0,-37.4367	1/1:65:0,65:0:0:65:2336:-210.477,-19.567,0	1/1:68:0,67:0:0:67:2402:-216.077,-20.169,0	0/1:58:25,33:25:900:33:1177:-87.7672,0,-63.8613	0/1:78:42,36:42:1496:36:1296:-92.6261,0,-111.454	0/1:51:37,14:37:1308:14:504:-29.5252,0,-102.669	1/1:168:0,168:0:0:168:5990:-532.419,-50.573,0	1/1:104:1,103:1:36:103:3697:-324.755,-27.7088,0
chr07	24529651	.	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chr07	24600152	.	G	A	60080.8	PASS	AB=0.515244;ABP=16.8472;AC=47;AF=0.25;AN=188;AO=3544;CIGAR=1X;DP=13920;DPB=13920;DPRA=0.99655;EPP=7698.71;EPPR=22272.1;GTI=0;LEN=1;MEANALT=1.14545;MQM=59.9718;MQMR=59.9936;NS=94;NUMALT=1;ODDS=4.9081;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126228;QR=369655;RO=10363;RPL=3544;RPP=7698.71;RPPR=22272.1;RPR=0;RUN=1;SAF=0;SAP=7698.71;SAR=3544;SRF=0;SRP=22506;SRR=10363;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:31,24:31:1090:24:860:-61.1652,0,-81.8513	0/1:299:168,131:168:6014:131:4679:-331.264,0,-451.355	0/1:197:101,96:101:3591:96:3435:-250.06,0,-264.095	0/0:355:355,0:355:12672:0:0:0,-106.866,-1140.31	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.886	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/1:202:105,97:105:3713:97:3484:-252.962,0,-273.529	0/0:278:278,0:278:9923:0:0:0,-83.6863,-893.011	0/0:120:118,1:118:4223:1:36:0,-32.5841,-376.651	0/1:172:82,90:82:2921:90:3207:-237.076,0,-211.347	0/0:116:116,0:116:4100:0:0:0,-34.9195,-369.188	0/1:87:53,34:53:1900:34:1202:-82.2946,0,-145.088	0/1:76:33,43:33:1175:43:1527:-114.844,0,-83.1787	0/1:127:65,62:65:2332:62:2207:-160.664,0,-171.909	0/1:109:50,59:50:1771:59:2112:-157.537,0,-126.86	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/0:100:100,0:100:3559:0:0:0,-30.103,-320.519	0/0:84:84,0:84:2978:0:0:0,-25.2865,-268.253	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:419:203,216:203:7292:216:7665:-563.762,0,-530.196	0/0:154:154,0:154:5473:0:0:0,-46.3586,-492.7	0/0:184:183,0:183:6539:0:0:0,-55.0885,-588.234	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.536	0/0:206:206,0:206:7350:0:0:0,-62.0122,-661.551	0/1:124:43,81:43:1544:81:2895:-223.458,0,-101.925	0/1:489:259,230:259:9228:230:8193:-590.181,0,-683.29	0/0:289:289,0:289:10351:0:0:0,-86.9977,-931.511	0/1:43:25,18:25:888:18:648:-45.7076,0,-67.2947	0/0:409:409,0:409:14607:0:0:0,-123.121,-1314.38	0/1:332:168,164:168:5999:164:5854:-427.03,0,-440.075	0/0:223:220,3:220:7892:3:108:0,-57.0545,-700.228	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:35:34,1:34:1211:1:36:0,-6.93777,-105.697	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:20:12,8:12:428:8:282:-19.7005,0,-32.7505	0/1:16:10,6:10:360:6:206:-14.0599,0,-27.9278	0/0:231:231,0:231:8197:0:0:0,-69.5379,-737.751	0/1:302:133,168:133:4760:168:5987:-447.968,0,-337.588	0/1:95:47,48:47:1656:48:1708:-125.407,0,-120.727	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:378:161,217:161:5745:217:7714:-580.505,0,-403.377	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/1:211:97,114:97:3448:114:4096:-305.307,0,-247.015	0/1:66:32,34:32:1144:34:1220:-90.2388,0,-83.4015	0/1:94:42,51:42:1500:51:1832:-136.805,0,-106.939	0/0:88:88,0:88:3126:0:0:0,-26.4906,-281.567	0/0:205:205,0:205:7310:0:0:0,-61.7111,-657.953	0/1:248:117,130:117:4192:130:4632:-342.32,0,-302.895	0/0:192:192,0:192:6876:0:0:0,-57.7978,-618.902	0/0:192:192,0:192:6846:0:0:0,-57.7978,-616.212	0/0:144:144,0:144:5117:0:0:0,-43.3483,-460.675	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0812	0/1:309:137,171:137:4895:171:6105:-456.474,0,-347.625	0/1:130:77,53:77:2748:53:1897:-131.873,0,-208.429	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:229:118,111:118:4194:111:3928:-284.779,0,-308.707	0/1:38:16,21:16:576:21:723:-53.8913,0,-40.677	0/1:11:2,9:2:72:9:316:-25.4675,0,-3.52539	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/0:148:146,1:146:5177:1:36:0,-41.013,-462.476	0/0:227:226,1:226:8045:1:36:0,-64.7355,-720.476	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/0:248:247,1:247:8833:1:36:0,-71.0572,-791.357	0/0:264:264,0:264:9431:0:0:0,-79.4719,-848.751	0/1:104:52,52:52:1864:52:1820:-132.763,0,-136.732	0/0:115:115,0:115:4096:0:0:0,-34.6184,-368.828	0/1:186:88,98:88:3143:98:3472:-256.697,0,-227.104	0/1:268:97,171:97:3463:171:6085:-467.077,0,-231.206	0/1:71:26,45:26:936:45:1607:-123.546,0,-63.1863	0/0:121:121,0:121:4301:0:0:0,-36.4246,-387.268	0/1:102:50,52:50:1792:52:1854:-136.433,0,-130.857	0/1:43:26,17:26:924:17:604:-41.7463,0,-70.5334	0/0:187:187,0:187:6656:0:0:0,-56.2926,-599.12	0/0:125:124,0:124:4432:0:0:0,-37.3277,-398.692	0/1:288:138,149:138:4935:149:5273:-387.953,0,-357.545	0/0:309:309,0:309:11059:0:0:0,-93.0183,-995.202	0/1:148:69,79:69:2463:79:2808:-208.407,0,-177.371	0/0:180:177,3:177:6322:3:108:0,-44.1102,-558.997	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:174:172,0:172:6130:0:0:0,-51.7772,-551.442	0/0:148:148,0:148:5271:0:0:0,-44.5524,-474.529	0/0:301:300,0:300:10690:0:0:0,-90.309,-961.655	0/0:122:122,0:122:4355:0:0:0,-36.7257,-392.125	0/1:67:32,35:32:1130:35:1246:-92.274,0,-81.8379	0/1:110:57,53:57:2036:53:1896:-137.805,0,-150.385	0/1:170:78,92:78:2767:92:3276:-243.779,0,-198.097	0/1:49:28,21:28:991:21:756:-53.6168,0,-74.7531	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.347	0/0:96:96,0:96:3409:0:0:0,-28.8989,-307.025	0/1:97:52,45:52:1855:45:1594:-114.549,0,-138.029	0/1:183:106,77:106:3787:77:2747:-192.384,0,-285.94	0/1:71:19,52:19:667:52:1864:-146.666,0,-38.9815	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:97:96,1:96:3427:1:36:0,-25.6016,-305.046
chr07	24638302	.	A	T	225546	PASS	AB=0.476496;ABP=39.6558;AC=141;AF=0.75;AN=188;AO=11888;CIGAR=1X;DP=15915;DPB=15915;DPRA=0;EPP=25817.5;EPPR=8741.02;GTI=0;LEN=1;MEANALT=1.03191;MQM=39.8524;MQMR=53.4063;NS=94;NUMALT=1;ODDS=8.62378;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=413886;QR=143754;RO=4024;RPL=0;RPP=25817.5;RPPR=8741.02;RPR=11888;RUN=1;SAF=0;SAP=25817.5;SAR=11888;SRF=0;SRP=8741.02;SRR=4024;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:26,21:26:936:21:744:-47.793,0,-69.8677	0/1:312:169,143:169:6010:143:4972:-327.382,0,-442.879	0/1:230:132,98:132:4725:98:3438:-221.63,0,-353.653	1/1:367:0,367:0:0:367:12754:-1115.08,-110.478,0	1/1:96:2,94:2:72:94:3274:-276.468,-22.0719,0	1/1:84:0,84:0:0:84:2958:-249.091,-25.2865,0	0/1:230:110,120:110:3903:120:4211:-298.433,0,-281.261	1/1:312:6,306:6:216:306:10565:-874.674,-74.1806,0	1/1:98:0,98:0:0:98:3371:-285.49,-29.5009,0	0/1:145:70,75:70:2512:75:2632:-185.678,0,-182.354	1/1:154:0,154:0:0:154:5393:-468.479,-46.3586,0	0/1:84:46,38:46:1633:38:1285:-81.2952,0,-121.174	0/1:70:38,32:38:1359:32:1118:-73.1694,0,-99.1077	0/1:153:73,80:73:2619:80:2754:-189.983,0,-189.127	0/1:70:36,34:36:1262:34:1187:-82.2704,0,-92.5448	1/1:69:0,69:0:0:69:2403:-206.247,-20.7711,0	1/1:114:0,114:0:0:114:3982:-335.624,-34.3174,0	1/1:86:0,86:0:0:86:3039:-255.161,-25.8886,0	1/1:54:0,54:0:0:54:1876:-158.179,-16.2556,0	0/1:527:281,246:281:10022:246:8535:-589.665,0,-739.881	1/1:191:1,190:1:36:190:6589:-565.738,-53.9036,0	1/1:225:0,225:0:0:225:7860:-681.271,-67.7318,0	1/1:96:0,96:0:0:96:3385:-295.772,-28.8989,0	1/1:185:1,184:1:36:184:6328:-540.097,-52.0974,0	0/1:135:77,58:77:2753:58:1984:-130.232,0,-206.834	0/1:559:301,258:301:10740:258:9035:-615.215,0,-794.641	1/1:361:0,361:0:0:361:12474:-1076.87,-108.672,0	0/1:36:15,21:15:525:21:748:-53.9599,0,-36.5467	1/1:514:0,514:0:0:514:17905:-1557.48,-154.729,0	0/1:302:148,154:148:5316:154:5358:-369.902,0,-386.221	1/1:263:0,263:0:0:263:9243:-805.193,-79.1709,0	1/1:8:0,8:0:0:8:284:-24.9273,-2.40824,0	1/1:52:0,52:0:0:52:1820:-155.632,-15.6536,0	0/1:11:8,3:8:288:3:108:-6.17395,0,-22.6948	0/1:19:11,8:11:396:8:262:-17.1747,0,-29.681	0/1:42:24,18:24:860:18:632:-41.3021,0,-64.2102	1/1:213:0,213:0:0:213:7465:-645.593,-64.1194,0	0/1:384:201,183:201:7176:183:6356:-429.931,0,-528.063	0/1:111:57,54:57:2031:54:1866:-125.386,0,-148.334	0/1:5:3,2:3:108:2:72:-5.05838,0,-8.55573	0/1:276:140,136:140:5013:136:4791:-330.548,0,-366.743	1/1:68:0,68:0:0:68:2300:-200.189,-20.47,0	0/1:277:151,126:151:5405:126:4382:-295.667,0,-401.876	0/1:70:30,40:30:1071:40:1389:-100.006,0,-75.391	0/1:76:30,46:30:1067:46:1542:-112.675,0,-71.9661	1/1:119:0,119:0:0:119:4127:-358.397,-35.8226,0	1/1:174:1,173:1:36:173:6019:-507.643,-48.7962,0	0/1:312:158,154:158:5635:154:5439:-377.681,0,-411.153	1/1:160:0,160:0:0:160:5581:-486.261,-48.1648,0	1/1:299:1,297:1:36:297:10359:-903.036,-86.4662,0	1/1:275:0,275:0:0:275:9562:-833.268,-82.7833,0	0/1:34:17,17:17:603:17:599:-42.6555,0,-44.2423	0/1:256:140,116:140:5023:116:4004:-263.737,0,-373.706	0/1:199:101,98:101:3636:98:3435:-237.956,0,-267.035	1/1:40:0,40:0:0:40:1387:-116.722,-12.0412,0	0/1:256:158,98:158:5662:98:3374:-211.28,0,-431.105	0/1:37:13,24:13:464:24:827:-61.9548,0,-30.7614	0/1:27:16,11:16:576:11:375:-24.9962,0,-43.9916	1/1:49:0,49:0:0:49:1727:-150.275,-14.7505,0	1/1:153:0,153:0:0:153:5338:-458.961,-46.0576,0	1/1:192:0,192:0:0:192:6696:-583.97,-57.7978,0	0/1:22:9,13:9:320:13:452:-33.46,0,-22.4989	1/1:371:2,369:2:72:369:12888:-1115.36,-104.852,0	1/1:349:7,342:7:252:342:11874:-1014.6,-82.0735,0	0/1:170:92,78:92:3289:78:2755:-185.684,0,-244.39	1/1:139:0,139:0:0:139:4861:-422.589,-41.8432,0	0/1:257:101,156:101:3619:156:5467:-397.398,0,-247.047	0/1:319:219,99:219:7821:99:3477:-208.161,0,-604.47	0/1:58:19,39:19:684:39:1336:-98.7483,0,-44.2137	1/1:107:2,105:2:72:105:3638:-300.061,-25.3907,0	0/1:105:56,49:56:1999:49:1671:-113.9,0,-147.969	0/1:27:16,11:16:548:11:376:-24.9474,0,-41.1585	1/1:167:0,167:0:0:167:5798:-486.235,-50.272,0	1/1:101:0,101:0:0:101:3461:-292.898,-30.404,0	0/1:341:143,198:143:5107:198:6926:-491.429,0,-354.914	1/1:340:0,340:0:0:340:11847:-1035.94,-102.35,0	0/1:293:169,124:169:6025:124:4383:-279.663,0,-451.668	1/1:204:2,202:2:72:202:7021:-588.571,-54.5906,0	1/1:12:0,12:0:0:12:420:-35.9439,-3.61236,0	1/1:189:0,189:0:0:189:6547:-564.963,-56.8947,0	1/1:239:0,239:0:0:239:8304:-700.624,-71.9462,0	1/1:404:2,402:2:72:402:14012:-1212.32,-114.784,0	1/1:119:0,119:0:0:119:4139:-360.783,-35.8226,0	0/1:101:50,51:50:1783:51:1795:-127.431,0,-130.141	0/1:103:63,39:63:2255:39:1367:-87.6918,0,-171.586	0/1:149:72,77:72:2584:77:2662:-188.642,0,-187.307	0/1:35:14,21:14:500:21:752:-53.4103,0,-34.5016	1/1:79:0,79:0:0:79:2730:-229.433,-23.7814,0	1/1:90:0,90:0:0:90:3086:-261.38,-27.0927,0	0/1:127:70,57:70:2494:57:2015:-136,0,-185.494	0/1:190:89,101:89:3178:101:3513:-243.471,0,-227.268	0/1:48:34,14:34:1211:14:498:-28.5631,0,-94.5066	1/1:184:0,184:0:0:184:6382:-555.634,-55.3895,0	1/1:113:1,112:1:36:112:3915:-337.864,-30.4207,0
chr07	24638332	.	T	C	66995.1	PASS	AB=0.510641;ABP=10.6817;AC=47;AF=0.25;AN=188;AO=4019;CIGAR=1X;DP=16505;DPB=16505;DPRA=1.21672;EPP=8669.46;EPPR=26049.5;GTI=0;LEN=1;MEANALT=1.06452;MQM=53.3125;MQMR=40.0557;NS=94;NUMALT=1;ODDS=8.35792;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142603;QR=445147;RO=12482;RPL=4012;RPP=8669.46;RPPR=26049.5;RPR=7;RUN=1;SAF=0;SAP=8730.16;SAR=4019;SRF=0;SRP=27107.3;SRR=12482;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:24,27:24:864:27:961:-70.8905,0,-56.3566	0/1:320:153,167:153:5442:167:5918:-432.248,0,-361.268	0/1:234:103,131:103:3704:131:4632:-344.291,0,-240.233	0/0:389:389,0:389:13814:0:0:0,-117.101,-1203.62	0/0:102:100,2:100:3550:2:72:0,-23.878,-298.997	0/0:85:85,0:85:3044:0:0:0,-25.5875,-255.272	0/1:237:129,108:129:4605:108:3796:-269.645,0,-329.438	0/0:335:329,6:329:11715:6:216:0,-81.1043,-964.276	0/0:107:107,0:107:3798:0:0:0,-32.2102,-319.12	0/1:148:78,70:78:2796:70:2486:-179.193,0,-198.147	0/0:157:157,0:157:5620:0:0:0,-47.2617,-487.326	0/1:81:37,44:37:1324:44:1580:-116.38,0,-84.0332	0/1:72:33,39:33:1169:39:1389:-101.04,0,-77.7844	0/1:152:80,72:80:2868:72:2580:-186.184,0,-199.027	0/1:71:35,36:35:1260:36:1296:-95.3033,0,-87.8923	0/0:69:69,0:69:2439:0:0:0,-20.7711,-207.96	0/0:114:114,0:114:4069:0:0:0,-34.3174,-340.779	0/0:84:84,0:84:3012:0:0:0,-25.2865,-251.861	0/0:55:55,0:55:1976:0:0:0,-16.5566,-165.028	0/1:534:259,275:259:9246:275:9717:-710.088,0,-645.614	0/0:197:196,1:196:6982:1:36:0,-55.7097,-595.982	0/0:238:238,0:238:8486:0:0:0,-71.6451,-735.484	0/0:102:102,0:102:3622:0:0:0,-30.7051,-315.998	0/0:196:196,0:196:7016:0:0:0,-59.0019,-598.501	0/1:138:61,77:61:2176:77:2722:-203.184,0,-144.861	0/1:579:275,304:275:9782:304:10719:-784.313,0,-674.446	0/0:379:379,0:379:13502:0:0:0,-114.09,-1160.35	0/1:36:21,15:21:752:15:525:-36.5467,0,-54.1332	0/0:540:538,2:538:19169:2:72:0,-157.196,-1658.09	0/1:315:162,153:162:5746:153:5450:-394.363,0,-397.083	0/0:277:277,0:277:9867:0:0:0,-83.3853,-856.456	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.2178	0/0:55:55,0:55:1961:0:0:0,-16.5566,-167.082	0/1:11:3,8:3:108:8:288:-22.6948,0,-6.17395	0/1:19:9,10:9:320:10:341:-25.2231,0,-21.7992	0/1:41:17,24:17:612:24:856:-64.1554,0,-39.5861	0/0:220:220,0:220:7869:0:0:0,-66.2266,-679.618	0/1:395:192,203:192:6766:203:7234:-529.87,0,-460.197	0/1:111:53,58:53:1900:58:2072:-152.107,0,-126.804	0/1:5:2,3:2:72:3:108:-8.55573,0,-5.05838	0/1:289:149,140:149:5336:140:4961:-357.636,0,-371.443	0/0:70:70,0:70:2485:0:0:0,-21.0721,-213.986	0/1:281:130,151:130:4591:151:5363:-396.916,0,-311.234	0/1:73:42,31:42:1504:31:1116:-78.5336,0,-108.994	0/1:73:50,22:50:1788:22:746:-45.3299,0,-133.126	0/0:127:127,0:127:4560:0:0:0,-38.2308,-394.61	0/0:181:180,1:180:6452:1:36:0,-50.9034,-540.911	0/1:322:167,155:167:5938:155:5463:-393.624,0,-416.969	0/0:182:182,0:182:6490:0:0:0,-54.7875,-562.752	0/0:310:309,1:309:11023:1:36:0,-89.7236,-957.148	0/0:288:288,0:288:10297:0:0:0,-86.6966,-894.353	0/1:35:18,17:18:644:17:612:-44.7532,0,-46.2464	0/1:263:124,139:124:4452:139:4958:-366.015,0,-296.147	0/1:206:103,103:103:3673:103:3665:-267.549,0,-255.64	0/0:41:41,0:41:1472:0:0:0,-12.3422,-123.27	0/1:265:110,154:110:3902:154:5413:-406.376,0,-249.772	0/1:42:28,14:28:996:14:504:-32.2246,0,-74.7936	0/1:27:11,16:11:392:16:576:-43.9916,0,-26.3253	0/0:54:54,0:54:1920:0:0:0,-16.2556,-166.468	0/0:159:159,0:159:5704:0:0:0,-47.8638,-487.872	0/0:200:199,1:199:7144:1:36:0,-58.1194,-619.816	0/1:23:14,9:14:504:9:309:-21.198,0,-37.5606	0/0:409:407,2:407:14486:2:72:0,-116.292,-1249.84	0/0:367:360,7:360:12866:7:248:0,-87.8398,-1096.07	0/1:171:78,93:78:2796:93:3340:-248.668,0,-188.781	0/0:151:151,0:151:5385:0:0:0,-45.4555,-466.891	0/1:265:162,103:162:5781:103:3662:-249.036,0,-421.021	0/1:325:103,222:103:3662:222:7861:-605.921,0,-221.762	0/1:58:38,19:38:1368:19:684:-44.3065,0,-100.568	0/0:116:113,2:113:4026:2:72:0,-28.0507,-330.538	0/1:104:49,55:49:1764:55:1957:-144.496,0,-121.161	0/1:25:11,14:11:392:14:495:-37.1959,0,-25.8573	0/0:175:175,0:175:6222:0:0:0,-52.6802,-518.385	0/0:107:107,0:107:3817:0:0:0,-32.2102,-320.372	0/1:346:204,142:204:7228:142:5041:-346.779,0,-514.798	0/0:361:361,0:361:12842:0:0:0,-108.672,-1119.39	0/1:292:127,165:127:4541:165:5864:-437.621,0,-292.322	0/0:208:206,2:206:7347:2:72:0,-55.7947,-612.714	0/0:14:14,0:14:504:0:0:0,-4.21442,-42.7815	0/0:198:198,0:198:7065:0:0:0,-59.6039,-605.119	0/0:251:251,0:251:8963:0:0:0,-75.5585,-749.288	0/0:423:421,2:421:14973:2:72:0,-120.504,-1292.46	0/0:120:120,0:120:4243:0:0:0,-36.1236,-368.923	0/1:102:53,49:53:1888:49:1760:-127.77,0,-135.031	0/1:109:43,66:43:1532:66:2310:-174.585,0,-100.266	0/1:154:81,73:81:2908:73:2590:-186.422,0,-206.45	0/1:35:22,13:22:788:13:468:-31.6282,0,-56.4593	0/0:83:83,0:83:2968:0:0:0,-24.9855,-247.886	0/0:93:92,1:92:3292:1:36:0,-25.6223,-275.382	0/1:128:58,70:58:2084:70:2520:-187.515,0,-141.229	0/1:191:100,91:100:3572:91:3215:-230.404,0,-247.437	0/1:46:13,33:13:468:33:1188:-93.0406,0,-26.3849	0/0:195:192,3:192:6857:3:108:0,-50.884,-588.795	0/0:113:110,3:110:3941:3:108:0,-25.2419,-335.141
chr07	24702068	.	T	A	54698	PASS	AB=0.653937;ABP=957.019;AC=43;AF=0.228723;AN=188;AO=3046;CIGAR=1X;DP=9169;DPB=9169;DPRA=1.25968;EPP=6617.32;EPPR=13292.4;GTI=5;LEN=1;MEANALT=1.04;MQM=58.7909;MQMR=39.2042;NS=94;NUMALT=1;ODDS=0.543898;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108898;QR=218681;RO=6120;RPL=3046;RPP=6617.32;RPPR=13292.4;RPR=0;RUN=1;SAF=0;SAP=6617.32;SAR=3046;SRF=0;SRP=13292.4;SRR=6120;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:2,13:2:72:13:468:-37.9156,0,-2.04808	0/1:155:63,92:63:2252:92:3266:-247.338,0,-148.377	0/1:111:34,77:34:1215:77:2749:-214.093,0,-71.9381	0/0:166:166,0:166:5968:0:0:0,-49.971,-511.989	0/0:18:18,0:18:633:0:0:0,-5.41854,-54.8575	0/0:36:36,0:36:1296:0:0:0,-10.8371,-112.441	0/1:129:46,83:46:1594:83:2949:-226.624,0,-98.6877	0/0:128:128,0:128:4573:0:0:0,-38.5318,-395.695	0/0:70:70,0:70:2501:0:0:0,-21.0721,-215.871	0/1:219:105,114:105:3765:114:4077:-300.466,0,-252.977	0/0:60:60,0:60:2156:0:0:0,-18.0618,-182.597	0/1:87:34,53:34:1224:53:1896:-144.715,0,-79.7654	0/1:97:41,56:41:1472:56:2012:-151.976,0,-98.3048	0/1:75:38,37:38:1368:37:1328:-97.2446,0,-94.9497	0/1:93:34,59:34:1216:59:2120:-162.9,0,-76.8016	0/0:61:61,0:61:2192:0:0:0,-18.3628,-188.449	0/0:86:86,0:86:3084:0:0:0,-25.8886,-266.893	0/0:51:51,0:51:1828:0:0:0,-15.3525,-158.343	0/0:33:33,0:33:1169:0:0:0,-9.93399,-101.334	0/1:122:43,78:43:1533:78:2808:-216.016,0,-95.3994	0/0:129:129,0:129:4612:0:0:0,-38.8329,-396.058	0/0:29:29,0:29:1025:0:0:0,-8.72987,-87.3918	0/0:48:48,0:48:1712:0:0:0,-14.4494,-147.034	0/0:86:84,2:84:3004:2:72:0,-19.0519,-251.339	0/1:77:10,67:10:345:67:2404:-193.303,0,-6.92337	0/1:366:131,235:131:4680:235:8409:-645.603,0,-288.158	0/0:150:150,0:150:5357:0:0:0,-45.1545,-458.94	0/1:49:23,26:23:828:26:936:-69.809,0,-56.7481	0/0:212:212,0:212:7539:0:0:0,-63.8184,-637.546	0/1:175:54,121:54:1944:121:4328:-336.977,0,-114.196	0/0:129:129,0:129:4602:0:0:0,-38.8329,-394.896	0/0:24:24,0:24:856:0:0:0,-7.22472,-73.745	0/0:24:24,0:24:864:0:0:0,-7.22472,-74.04	0/0:15:14,1:14:504:1:36:0,-0.917175,-40.2738	0/0:23:23,0:23:813:0:0:0,-6.92369,-70.0429	0/1:30:25,5:25:900:5:180:-7.52116,0,-69.0442	0/0:278:277,1:277:9879:1:36:0,-80.0891,-833.558	0/1:199:44,155:44:1568:155:5507:-434.198,0,-75.1271	0/1:65:35,30:35:1252:30:1068:-76.8504,0,-88.8982	0/1:7:6,1:6:216:1:36:-1.49107,0,-16.6516	0/1:193:47,146:47:1680:146:5244:-413.687,0,-86.2712	0/0:43:43,0:43:1536:0:0:0,-12.9443,-132.192	0/1:95:24,71:24:841:71:2525:-198.894,0,-43.9722	0/1:114:48,66:48:1716:66:2364:-178.632,0,-113.049	0/1:93:36,57:36:1288:57:2036:-155.45,0,-81.7618	0/0:70:70,0:70:2492:0:0:0,-21.0721,-210.869	0/0:51:51,0:51:1832:0:0:0,-15.3525,-158.674	0/1:225:68,157:68:2440:157:5623:-437.977,0,-140.767	0/0:81:81,0:81:2861:0:0:0,-24.3834,-243.207	0/0:103:101,2:101:3624:2:72:0,-24.1702,-303.278	0/0:50:50,0:50:1777:0:0:0,-15.0515,-149.104	0/0:34:32,2:32:1125:2:72:0,-3.39914,-90.3095	0/1:212:27,185:27:968:185:6599:-529.989,0,-20.1835	0/1:47:10,37:10:356:37:1312:-104.085,0,-16.494	0/0:53:53,0:53:1896:0:0:0,-15.9546,-163.301	0/1:144:43,101:43:1532:101:3610:-281.602,0,-88.3392	0/1:43:15,28:15:525:28:1004:-77.7213,0,-32.4665	0/1:5:4,1:4:144:1:36:-2.09212,0,-11.029	0/0:53:53,0:53:1888:0:0:0,-15.9546,-160.141	0/0:69:69,0:69:2457:0:0:0,-20.7711,-210.171	0/0:116:116,0:116:4153:0:0:0,-34.9195,-355.404	0/0:13:13,0:13:468:0:0:0,-3.91339,-40.5211	0/0:270:270,0:270:9634:0:0:0,-81.2781,-817.847	0/0:128:123,5:123:4400:5:180:0,-22.0726,-359.747	0/1:107:34,73:34:1220:73:2616:-203.352,0,-72.7785	0/0:72:72,0:72:2561:0:0:0,-21.6742,-220.097	0/1:113:45,68:45:1601:68:2413:-182.842,0,-101.624	0/1:117:32,85:32:1144:85:3045:-238.841,0,-62.377	0/1:28:17,11:17:597:11:392:-27.1912,0,-43.237	0/0:45:45,0:45:1612:0:0:0,-13.5463,-139.678	0/1:120:53,67:53:1885:67:2404:-180.381,0,-123.675	0/1:20:9,11:9:324:11:392:-29.5956,0,-22.0529	0/0:87:87,0:87:3124:0:0:0,-26.1896,-270.324	0/0:97:97,0:97:3457:0:0:0,-29.1999,-299.49	0/1:154:48,106:48:1724:106:3788:-294.56,0,-101.819	0/0:113:113,0:113:4060:0:0:0,-34.0164,-348.143	0/1:42:11,31:11:392:31:1112:-87.7123,0,-21.4228	0/0:165:165,0:165:5912:0:0:0,-49.6699,-511.461	0/0:172:172,0:172:6161:0:0:0,-51.7772,-532.401	0/0:106:106,0:106:3788:0:0:0,-31.9092,-324.591	0/0:52:52,0:52:1864:0:0:0,-15.6536,-160.662	0/0:145:145,0:145:5155:0:0:0,-43.6493,-441.687	0/0:119:117,2:117:4177:2:72:0,-28.9867,-351.162	0/1:67:24,43:24:856:43:1533:-117.996,0,-53.832	0/1:115:47,67:47:1677:67:2381:-179.849,0,-109.355	0/1:241:96,145:96:3448:145:5188:-394.244,0,-222.242	0/1:36:12,24:12:428:24:852:-66.1274,0,-26.7092	0/0:67:67,0:67:2404:0:0:0,-20.169,-208.165	0/0:65:64,0:64:2300:0:0:0,-19.2659,-198.633	0/1:31:13,18:13:468:18:640:-48.5402,0,-31.2246	0/1:74:43,31:43:1548:31:1116:-78.2028,0,-111.148	0/1:128:28,100:28:1008:100:3592:-284.663,0,-48.1132	0/0:136:136,0:136:4869:0:0:0,-40.9401,-417.389	0/0:103:103,0:103:3673:0:0:0,-31.0061,-314.796
chr07	24702078	.	G	C	114847	PASS	AB=0.345727;ABP=953.737;AC=145;AF=0.771277;AN=188;AO=6033;CIGAR=1X;DP=9062;DPB=9062;DPRA=0;EPP=13103.5;EPPR=6556.51;GTI=6;LEN=1;MEANALT=1.10638;MQM=39.1716;MQMR=58.8535;NS=94;NUMALT=1;ODDS=0.216186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215820;QR=107893;RO=3018;RPL=6033;RPP=13103.5;RPPR=6556.51;RPR=0;RUN=1;SAF=0;SAP=13103.5;SAR=6033;SRF=0;SRP=6556.51;SRR=3018;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:13,2:13:460:2:72:-2.04808,0,-37.2083	0/1:154:92,62:92:3264:62:2224:-146.099,0,-247.487	0/1:110:76,34:76:2712:34:1220:-72.6521,0,-211.104	1/1:165:0,164:0:0:164:5854:-502.335,-49.3689,0	1/1:16:0,16:0:0:16:576:-49.8999,-4.81648,0	1/1:36:0,36:0:0:36:1280:-111.221,-10.8371,0	0/1:128:81,45:81:2908:45:1612:-99.6044,0,-223.501	1/1:126:0,126:0:0:126:4502:-389.399,-37.9298,0	1/1:68:0,67:0:0:67:2370:-204.251,-20.169,0	0/1:218:113,105:113:4048:105:3745:-251.836,0,-298.183	1/1:56:0,56:0:0:56:2008:-170.505,-16.8577,0	0/1:86:52,34:52:1860:34:1224:-80.0665,0,-141.789	0/1:99:58,41:58:2088:41:1468:-97.3418,0,-158.211	0/1:77:39,38:39:1392:38:1368:-94.3476,0,-102.385	0/1:91:56,34:56:1992:34:1212:-77.0771,0,-151.998	1/1:60:0,60:0:0:60:2145:-184.122,-18.0618,0	1/1:85:0,85:0:0:85:3030:-262.067,-25.5876,0	1/1:51:0,51:0:0:51:1821:-157.704,-15.3525,0	1/1:33:0,33:0:0:33:1188:-102.931,-9.93399,0	0/1:123:80,43:80:2880:43:1540:-95.8777,0,-222.245	1/1:131:0,131:0:0:131:4644:-398.749,-39.4349,0	1/1:28:0,28:0:0:28:1008:-85.7388,-8.42884,0	1/1:47:0,47:0:0:47:1676:-143.984,-14.1484,0	1/1:84:1,83:1:36:83:2980:-252.279,-21.6882,0	0/1:76:66,10:66:2368:10:356:-8.07223,0,-190.41	0/1:365:234,131:234:8336:131:4700:-289.747,0,-639.447	1/1:148:0,148:0:0:148:5262:-451.115,-44.5524,0	0/1:48:25,23:25:888:23:828:-57.0491,0,-65.7896	1/1:211:0,210:0:0:210:7501:-634.056,-63.2163,0	0/1:175:121,54:121:4328:54:1925:-112.635,0,-336.971	1/1:125:0,125:0:0:125:4458:-382.259,-37.6288,0	1/1:24:0,24:0:0:24:864:-74.2922,-7.22472,0	1/1:23:0,23:0:0:23:824:-70.685,-6.92369,0	1/1:15:1,14:1:36:14:500:-39.985,-0.917175,0	1/1:22:0,22:0:0:22:788:-68.4876,-6.62266,0	0/1:30:4,26:4:140:26:917:-70.6364,0,-3.91368	1/1:274:1,273:1:36:273:9744:-821.835,-78.885,0	0/1:195:153,42:153:5492:42:1488:-69.5347,0,-433.971	0/1:65:30,35:30:1072:35:1230:-87.0378,0,-77.1806	0/1:7:1,6:1:36:6:212:-16.3742,0,-1.49106	0/1:191:144,47:144:5156:47:1692:-87.7063,0,-406.458	1/1:42:0,42:0:0:42:1512:-129.888,-12.6433,0	0/1:97:73,24:73:2608:24:860:-44.8466,0,-205.759	0/1:109:64,45:64:2288:45:1620:-106.44,0,-173.302	0/1:95:59,36:59:2100:36:1296:-81.706,0,-160.606	1/1:70:0,70:0:0:70:2516:-212.66,-21.0721,0	1/1:50:0,50:0:0:50:1796:-155.484,-15.0515,0	0/1:221:153,68:153:5468:68:2444:-142.216,0,-425.32	1/1:80:0,80:0:0:80:2850:-241.653,-24.0824,0	1/1:99:2,97:2:72:97:3476:-291.398,-22.9661,0	1/1:50:0,50:0:0:50:1773:-148.805,-15.0515,0	1/1:32:2,30:2:72:30:1065:-84.742,-2.79708,0	0/1:209:182,27:182:6480:27:972:-21.3743,0,-520.203	0/1:46:37,9:37:1316:9:305:-12.4943,0,-104.762	1/1:53:0,53:0:0:53:1904:-163.875,-15.9546,0	0/1:142:100,42:100:3572:42:1512:-86.9521,0,-278.797	0/1:43:28,15:28:1008:15:540:-33.6727,0,-78.0816	0/1:5:1,4:1:32:4:144:-11.029,0,-1.69376	1/1:49:0,49:0:0:49:1752:-148.258,-14.7505,0	1/1:67:0,67:0:0:67:2408:-205.85,-20.169,0	1/1:111:1,110:1:32:110:3945:-334.002,-30.2178,0	1/1:13:0,13:0:0:13:468:-40.5211,-3.91339,0	1/1:269:1,268:1:21:268:9601:-812.427,-78.8774,0	1/1:126:3,121:3:108:121:4328:-359.547,-27.6106,0	0/1:105:71,34:71:2544:34:1209:-72.4525,0,-197.522	1/1:72:0,72:0:0:72:2573:-220.915,-21.6742,0	0/1:114:69,44:69:2464:44:1565:-97.8764,0,-187.034	0/1:117:86,31:86:3096:31:1101:-58.5884,0,-243.43	0/1:29:11,18:11:396:18:648:-47.2503,0,-27.2529	1/1:46:0,46:0:0:46:1648:-142.787,-13.8474,0	0/1:122:68,54:68:2424:54:1921:-126.106,0,-181.58	0/1:20:11,9:11:396:9:324:-22.0529,0,-29.9574	1/1:86:0,86:0:0:86:3077:-265.379,-25.8886,0	1/1:95:0,95:0:0:95:3416:-295.786,-28.5979,0	0/1:155:106,49:106:3796:49:1752:-103.985,0,-295.097	1/1:111:0,111:0:0:111:3973:-340.962,-33.4143,0	0/1:42:31,11:31:1112:11:396:-21.7123,0,-87.7123	1/1:164:0,164:0:0:164:5873:-508.115,-49.3689,0	1/1:170:0,170:0:0:170:6104:-527.187,-51.1751,0	1/1:105:0,105:0:0:105:3761:-321.947,-31.6082,0	1/1:51:0,51:0:0:51:1836:-158.225,-15.3525,0	1/1:146:0,146:0:0:146:5248:-449.488,-43.9504,0	1/1:116:2,113:2:72:113:4048:-339.702,-28.1307,0	0/1:64:41,23:41:1468:23:820:-51.5107,0,-113.055	0/1:116:66,50:66:2356:50:1777:-117.892,0,-177.355	0/1:234:142,91:142:5088:91:3253:-208.633,0,-387.394	0/1:36:24,12:24:860:12:428:-26.7092,0,-66.8489	1/1:67:0,67:0:0:67:2397:-207.439,-20.169,0	1/1:63:0,63:0:0:63:2268:-196.215,-18.9649,0	0/1:29:16,13:16:568:13:468:-31.8267,0,-42.6657	0/1:72:31,41:31:1108:41:1476:-105.499,0,-78.0842	0/1:124:96,28:96:3440:28:1008:-49.3173,0,-272.24	1/1:134:0,134:0:0:134:4793:-411.111,-40.338,0	1/1:98:0,98:0:0:98:3516:-301.882,-29.5009,0
chr07	24739704	.	CGCG	AGCA,AGCG	169364	PASS	AB=0.498041,0.5;ABP=3.12938,3.0103;AC=139,49;AF=0.739362,0.260638;AN=188;AO=6154,1801;CIGAR=1X2M1X,1X3M;DP=7973;DPB=7973.25;DPRA=21.422,0.944003;EPP=13366.3,3913.83;EPPR=0;GTI=2;LEN=4,1;MEANALT=1.77419,2.16364;MQM=59.2257,59.9234;MQMR=0;NS=94;NUMALT=2;ODDS=0.691287;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=216857,64207;QR=0;RO=0;RPL=6154,1801;RPP=13366.3,3913.83;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13366.3,3913.83;SAR=6154,1801;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:33:0,9,24:0:0:9,24:316,856:-95.7089,-70.0491,-67.3398,-26.0116,0,-18.7869	1/2:78:0,39,38:0:0:39,38:1364,1352:-221.218,-110.281,-98.5405,-111.046,0,-99.6067	1/2:117:0,62,55:0:0:62,55:2216,1964:-340.929,-160.479,-141.815,-180.807,0,-164.25	1/1:263:0,263,0:0:0:263,0:9286,0:-835.37,-79.1709,0,-835.37,-79.1709,-835.37	1/1:9:0,8,0:0:0:8,0:272,0:-24.4524,-2.40824,0,-24.4524,-2.40824,-24.4524	1/1:30:0,30,0:0:0:30,0:1054,0:-94.8615,-9.0309,0,-94.8615,-9.0309,-94.8615	1/2:66:0,28,38:0:0:28,38:993,1364:-192.493,-111.622,-103.193,-81.2279,0,-69.7887	1/1:45:0,45,0:0:0:45,0:1575,0:-142.022,-13.5464,0,-142.022,-13.5464,-142.022	1/1:95:0,93,2:0:0:93,2:3261,72:-293.205,-27.9958,0,-287.33,-21.7611,-286.727	1/2:84:0,41,43:0:0:41,43:1456,1539:-244.452,-125.859,-113.516,-118.95,0,-106.005	1/1:16:0,16,0:0:0:16,0:568,0:-51.4408,-4.81648,0,-51.4408,-4.81648,-51.4408	1/2:68:0,32,36:0:0:32,36:1103,1295:-195.493,-106.017,-96.3839,-89.8276,0,-78.9905	1/2:69:0,33,35:0:0:33,35:1166,1260:-197.718,-102.927,-92.9928,-94.9026,0,-84.3665	1/2:44:0,25,18:0:0:25,18:878,648:-124.315,-52.8628,-45.3371,-71.449,0,-66.0305	1/2:59:0,31,28:0:0:31,28:1091,1008:-171.401,-82.6075,-73.2756,-89.1497,0,-80.7209	1/1:41:0,41,0:0:0:41,0:1443,0:-130.132,-12.3422,0,-130.132,-12.3422,-130.132	1/1:26:0,26,0:0:0:26,0:907,0:-81.9142,-7.82678,0,-81.9142,-7.82678,-81.9142	1/1:26:0,26,0:0:0:26,0:927,0:-83.7224,-7.82678,0,-83.7224,-7.82678,-83.7224	1/1:7:0,7,0:0:0:7,0:246,0:-22.4733,-2.10721,0,-22.4733,-2.10721,-22.4733	1/2:186:0,109,77:0:0:109,77:3817,2756:-535.576,-225.075,-192.263,-310.855,0,-287.676	1/1:200:0,199,0:0:0:199,0:6939,0:-623.275,-59.905,0,-623.275,-59.905,-623.275	1/1:63:0,63,0:0:0:63,0:2223,0:-200.304,-18.9649,0,-200.304,-18.9649,-200.304	1/1:110:0,109,1:0:0:109,1:3850,32:-345.065,-32.8123,0,-342.487,-29.914,-342.186	1/1:71:0,71,0:0:0:71,0:2498,0:-225.062,-21.3731,0,-225.062,-21.3731,-225.062	1/2:57:0,26,31:0:0:26,31:915,1112:-165.533,-91.0594,-83.2326,-74.8289,0,-65.4969	1/2:265:0,116,149:0:0:116,149:4093,5309:-766.195,-433.056,-398.137,-333.493,0,-288.64	1/1:189:0,189,0:0:0:189,0:6675,0:-600.399,-56.8947,0,-600.399,-56.8947,-600.399	1/2:30:0,12,18:0:0:12,18:426,648:-87.9415,-53.2333,-49.621,-35.065,0,-29.6465	1/1:338:0,337,0:0:0:337,0:11900,0:-1069.31,-101.447,0,-1069.31,-101.447,-1069.31	1/2:144:0,87,57:0:0:87,57:3071,2036:-416.159,-166.354,-140.164,-250.161,0,-233.002	1/1:160:0,159,1:0:0:159,1:5590,36:-502.193,-47.8638,0,-499.256,-44.5665,-498.955	1/1:8:0,8,0:0:0:8,0:286,0:-26.0747,-2.40824,0,-26.0747,-2.40824,-26.0747	1/1:10:0,10,0:0:0:10,0:348,0:-31.6439,-3.0103,0,-31.6439,-3.0103,-31.6439	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:136:0,133,1:0:0:133,1:4722,32:-424.352,-40.037,0,-421.774,-37.4716,-421.473	1/2:82:0,43,38:0:0:43,38:1509,1345:-232.528,-109.733,-96.789,-122.972,0,-111.533	1/2:23:0,9,14:0:0:9,14:323,500:-67.4695,-41.1218,-38.4125,-26.7058,0,-22.4914	1/2:7:0,3,4:0:0:3,4:100,140:-19.8269,-11.7405,-10.8374,-8.42677,0,-7.22265	1/2:127:0,72,55:0:0:72,55:2523,1968:-366.088,-160.838,-139.164,-205.604,0,-189.047	1/1:14:0,14,0:0:0:14,0:493,0:-44.6908,-4.21442,0,-44.6908,-4.21442,-44.6908	1/2:117:0,60,57:0:0:60,57:2119,2040:-339.212,-166.713,-148.652,-172.854,0,-155.696	1/2:52:0,24,28:0:0:24,28:848,1004:-151.304,-82.247,-75.0223,-69.413,0,-60.9842	1/2:40:0,21,19:0:0:21,19:729,684:-115.386,-56.1708,-49.8491,-59.5688,0,-53.8492	1/1:102:0,101,0:0:0:101,0:3569,0:-320.606,-30.404,0,-320.606,-30.404,-320.606	1/1:93:0,93,0:0:0:93,0:3275,0:-294.933,-27.9958,0,-294.933,-27.9958,-294.933	1/2:148:0,67,81:0:0:67,81:2353,2876:-426.036,-234.694,-214.525,-191.694,0,-167.31	1/1:124:0,124,0:0:0:124,0:4376,0:-393.902,-37.3277,0,-393.902,-37.3277,-393.902	1/1:139:0,139,0:0:0:139,0:4887,0:-439.84,-41.8432,0,-439.84,-41.8432,-439.84	1/1:140:0,140,0:0:0:140,0:4950,0:-445.538,-42.1442,0,-445.538,-42.1442,-445.538	1/2:5:0,3,2:0:0:3,2:99,72:-14.2138,-6.23466,-5.33157,-8.32689,0,-7.72483	1/2:92:0,44,48:0:0:44,48:1544,1720:-266.263,-140.636,-127.391,-125.982,0,-111.532	1/2:58:0,41,16:0:0:41,16:1458,557:-164.014,-45.28,-32.9377,-118.725,0,-113.908	1/1:4:0,4,0:0:0:4,0:144,0:-13.3028,-1.20412,0,-13.3028,-1.20412,-13.3028	1/2:132:0,71,60:0:0:71,60:2501,2116:-375.428,-172.346,-150.973,-203.132,0,-185.071	1/2:39:0,21,18:0:0:21,18:719,644:-111.197,-52.8721,-46.5504,-58.6758,0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chr07	24765395	.	G	C	97049.5	PASS	AB=0.51988;ABP=13.2843;AC=140;AF=0.752688;AN=186;AO=4632;CIGAR=1X;DP=6078;DPB=6078;DPRA=66.0543;EPP=9845.3;EPPR=3112.58;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.9786;MQMR=59.9424;NS=93;NUMALT=1;ODDS=0.350229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163465;QR=50366;RO=1440;RPL=25;RPP=9845.3;RPPR=3112.58;RPR=4607;RUN=1;SAF=0;SAP=10061.3;SAR=4632;SRF=0;SRP=3129.93;SRR=1440;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:21,14:21:741:14:495:-34.347,0,-56.4755	0/1:134:69,65:69:2410:65:2302:-167.084,0,-176.817	0/1:235:81,154:81:2820:154:5481:-422.674,0,-183.294	1/1:174:0,174:0:0:174:6108:-549.827,-52.3792,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:71:47,24:47:1638:24:852:-55.6273,0,-126.331	1/1:87:0,87:0:0:87:3068:-276.35,-26.1896,0	1/1:53:0,53:0:0:53:1846:-166.419,-15.9546,0	0/1:53:28,25:28:972:25:896:-65.0058,0,-71.8346	1/1:22:0,22:0:0:22:769:-69.5286,-6.62266,0	0/1:75:34,41:34:1157:41:1431:-106.506,0,-81.851	0/1:69:41,28:41:1404:28:982:-67.9206,0,-105.879	0/1:37:23,14:23:777:14:479:-32.2973,0,-59.0328	0/1:59:30,29:30:1057:29:1031:-75.3419,0,-77.6782	1/1:63:0,63:0:0:63:2204:-198.624,-18.9649,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:22:0,22:0:0:22:778:-70.3417,-6.62266,0	1/1:60:0,60:0:0:60:2124:-191.427,-18.0618,0	0/1:138:75,62:75:2605:62:2207:-157.294,0,-193.094	1/1:93:0,93:0:0:93:3242:-292,-27.9958,0	1/1:56:0,56:0:0:56:1996:-179.914,-16.8577,0	1/1:50:0,50:0:0:50:1745:-157.33,-15.0515,0	1/1:42:0,42:0:0:42:1492:-134.57,-12.6433,0	0/1:37:18,19:18:644:19:676:-50.0299,0,-47.1525	0/1:140:78,62:78:2703:62:2216:-157.561,0,-201.367	1/1:166:1,165:1:36:165:5840:-522.117,-46.3727,0	0/1:27:13,14:13:464:14:479:-35.3076,0,-33.9697	1/1:167:0,167:0:0:167:5939:-534.619,-50.272,0	0/1:133:59,74:59:2084:74:2603:-194.48,0,-147.791	1/1:64:2,62:2:68:62:2194:-191.267,-12.8082,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:141:0,141:0:0:141:4969:-447.363,-42.4452,0	0/1:81:46,35:46:1603:35:1222:-85.897,0,-120.172	0/1:35:15,20:15:532:20:690:-51.8833,0,-37.677	.:.:.:.:.:.:.:.	0/1:111:38,73:38:1352:73:2610:-201.734,0,-88.566	1/1:29:0,29:0:0:29:1022:-92.2909,-8.72987,0	0/1:58:26,32:26:936:32:1125:-84.0972,0,-67.0997	0/1:54:28,26:28:984:26:928:-67.5826,0,-72.615	0/1:34:16,18:16:558:18:605:-44.5308,0,-40.3114	1/1:51:0,51:0:0:51:1789:-161.29,-15.3525,0	1/1:46:0,46:0:0:46:1631:-147.078,-13.8474,0	0/1:115:48,67:48:1651:67:2359:-177.911,0,-113.931	1/1:56:0,56:0:0:56:1967:-177.302,-16.8577,0	1/1:68:0,68:0:0:68:2392:-215.534,-20.47,0	1/1:79:0,79:0:0:79:2808:-252.961,-23.7814,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:110:40,70:40:1405:70:2462:-188.72,0,-93.6316	0/1:40:12,28:12:415:28:985:-76.9203,0,-25.6391	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:105:42,63:42:1457:63:2217:-168.186,0,-99.8134	0/1:31:18,13:18:640:13:447:-31.2258,0,-48.5974	0/1:7:6,1:6:207:1:36:-1.49107,0,-16.8597	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	1/1:53:0,53:0:0:53:1877:-169.207,-15.9546,0	1/1:75:1,74:1:36:74:2626:-232.989,-18.979,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	1/1:127:0,125:0:0:125:4431:-398.599,-37.6288,0	1/1:95:0,94:0:0:94:3333:-299.829,-28.2968,0	0/1:30:15,15:15:516:15:540:-39.9056,0,-37.7325	1/1:70:0,70:0:0:70:2483:-223.724,-21.0721,0	0/1:85:45,40:45:1603:40:1417:-102.239,0,-118.97	0/1:145:88,55:88:3132:55:1935:-131.09,0,-238.771	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:37:0,37:0:0:37:1313:-118.471,-11.1381,0	0/1:42:16,26:16:559:26:916:-70.1132,0,-37.9943	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:107:0,107:0:0:107:3759:-338.502,-32.2102,0	1/1:55:0,55:0:0:55:1959:-176.585,-16.5567,0	0/1:66:26,40:26:900:40:1428:-108.95,0,-61.4433	0/1:146:68,78:68:2341:78:2788:-207.21,0,-166.993	0/1:46:10,36:10:348:36:1248:-98.7707,0,-17.8078	1/1:84:0,84:0:0:84:2945:-265.283,-25.2865,0	1/1:14:0,14:0:0:14:476:-43.1628,-4.21442,0	1/1:101:1,100:1:36:100:3550:-316.11,-26.8058,0	1/1:81:0,81:0:0:81:2883:-259.707,-24.3834,0	1/1:92:0,92:0:0:92:3255:-293.17,-27.6948,0	1/1:42:0,42:0:0:42:1455:-131.241,-12.6433,0	0/1:43:28,15:28:982:15:528:-34.9071,0,-75.7474	0/1:46:25,21:25:855:21:735:-52.624,0,-63.4127	0/1:106:44,62:44:1544:62:2162:-162.936,0,-107.34	0/1:18:8,10:8:284:10:352:-26.5997,0,-20.4848	1/1:76:0,76:0:0:76:2648:-238.565,-22.8783,0	1/1:55:0,55:0:0:55:1930:-173.976,-16.5567,0	0/1:24:16,8:16:572:8:279:-18.2228,0,-44.5887	0/1:77:35,42:35:1256:42:1462:-108.692,0,-90.166	0/1:63:40,23:40:1402:23:811:-54.3451,0,-107.511	1/1:73:0,73:0:0:73:2601:-234.337,-21.9752,0	1/1:110:0,110:0:0:110:3804:-342.562,-33.1133,0
chr07	24932567	.	CTA	GTG,GTA	88525.5	PASS	AB=0.544426,0.453877;ABP=33.3015,35.661;AC=142,46;AF=0.755319,0.244681;AN=188;AO=3346,815;CIGAR=1X1M1X,1X2M;DP=4167;DPB=4167;DPRA=12.9193,0.847074;EPP=7234.05,1755.43;EPPR=0;GTI=1;LEN=3,1;MEANALT=1.55435,2.02128;MQM=59.8691,59.9951;MQMR=0;NS=94;NUMALT=2;ODDS=0.670181;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=117370,29138;QR=0;RO=0;RPL=3342,813;RPP=7234.05,1755.43;RPPR=0;RPR=4,2;RUN=1,1;SAF=0,0;SAP=7268.76,1772.76;SAR=3346,815;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:8:0,6,2:0:0:6,2:216,72:-23.8592,-6.23466,-4.42848,-17.9843,0,-17.3823	1/2:75:0,47,28:0:0:47,28:1671,1004:-218.418,-82.247,-68.0986,-136.528,0,-128.1	1/2:36:0,15,21:0:0:15,21:526,733:-102.773,-59.968,-55.4526,-43.1548,0,-36.8332	1/1:66:0,66,0:0:0:66,0:2318,0:-208.559,-19.868,0,-208.559,-19.868,-208.559	1/1:17:0,17,0:0:0:17,0:582,0:-52.6292,-5.11751,0,-52.6292,-5.11751,-52.6292	1/1:18:0,18,0:0:0:18,0:624,0:-56.4744,-5.41854,0,-56.4744,-5.41854,-56.4744	1/2:59:0,37,22:0:0:37,22:1289,777:-168.448,-63.6277,-52.4896,-105.171,0,-98.5488	1/1:65:0,64,0:0:0:64,0:2229,0:-200.563,-19.2659,0,-200.563,-19.2659,-200.563	1/1:38:0,38,0:0:0:38,0:1335,0:-120.447,-11.4391,0,-120.447,-11.4391,-120.447	1/2:58:0,31,27:0:0:31,27:1110,972:-170.191,-79.6701,-70.3382,-90.8796,0,-82.7517	1/1:43:0,43,0:0:0:43,0:1446,0:-129.938,-12.9443,0,-129.938,-12.9443,-129.938	1/2:40:0,20,20:0:0:20,20:691,720:-115.243,-59.1082,-53.0876,-56.4876,0,-50.467	1/2:43:0,20,23:0:0:20,23:712,824:-125.588,-67.5596,-61.539,-58.3855,0,-51.4618	1/2:28:0,18,10:0:0:18,10:631,360:-81.0741,-29.734,-24.3155,-51.6965,0,-48.6862	1/2:30:0,19,11:0:0:19,11:669,396:-87.1303,-32.6714,-26.9518,-54.8158,0,-51.5045	1/1:17:0,17,0:0:0:17,0:587,0:-53.1521,-5.11751,0,-53.1521,-5.11751,-53.1521	1/1:18:0,18,0:0:0:18,0:632,0:-57.2064,-5.41854,0,-57.2064,-5.41854,-57.2064	1/1:32:0,32,0:0:0:32,0:1129,0:-101.917,-9.63296,0,-101.917,-9.63296,-101.917	1/1:24:0,24,0:0:0:24,0:859,0:-77.6293,-7.22472,0,-77.6293,-7.22472,-77.6293	1/2:40:0,24,16:0:0:24,16:851,572:-116.326,-46.9969,-39.7722,-69.6851,0,-64.8686	1/1:54:0,53,0:0:0:53,0:1825,0:-164.166,-15.9546,0,-164.166,-15.9546,-164.166	1/1:55:0,55,0:0:0:55,0:1919,0:-172.956,-16.5567,0,-172.956,-16.5567,-172.956	1/1:44:0,43,1:0:0:43,1:1497,36:-134.66,-12.9443,0,-131.723,-9.64705,-131.422	1/1:31:0,31,0:0:0:31,0:1095,0:-98.8584,-9.33193,0,-98.8584,-9.33193,-98.8584	1/2:15:0,7,8:0:0:7,8:233,288:-42.5702,-23.8592,-21.752,-19.0553,0,-16.647	1/2:138:0,99,39:0:0:99,39:3477,1396:-397.185,-114.199,-84.397,-283.342,0,-271.602	1/1:30:0,30,0:0:0:30,0:1049,0:-94.7158,-9.0309,0,-94.7158,-9.0309,-94.7158	1/2:10:0,4,6:0:0:4,6:144,216:-29.7331,-17.9843,-16.7802,-12.1086,0,-10.3024	1/1:78:0,78,0:0:0:78,0:2753,0:-248.013,-23.4803,0,-248.013,-23.4803,-248.013	1/2:43:0,21,22:0:0:21,22:728,792:-124.148,-64.983,-58.6614,-59.5177,0,-52.8951	1/1:53:0,53,0:0:0:53,0:1833,0:-165.243,-15.9546,0,-165.243,-15.9546,-165.243	1/1:98:0,98,0:0:0:98,0:3482,0:-313.592,-29.5009,0,-313.592,-29.5009,-313.592	1/1:96:0,96,0:0:0:96,0:3333,0:-300.186,-28.8989,0,-300.186,-28.8989,-300.186	1/1:4:0,4,0:0:0:4,0:144,0:-13.3132,-1.20412,0,-13.3132,-1.20412,-13.3132	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:88:0,87,0:0:0:87,0:3077,0:-276.817,-26.1896,0,-276.817,-26.1896,-276.817	1/2:68:0,33,35:0:0:33,35:1180,1244:-197.947,-101.729,-91.7946,-96.5745,0,-86.0384	1/2:17:0,9,8:0:0:9,8:311,288:-49.1207,-23.8592,-21.1499,-25.6145,0,-23.2063	1/1:1:0,1,0:0:0:1,0:34,0:-3.39891,-0.30103,0,-3.39891,-0.30103,-3.39891	1/2:54:0,27,27:0:0:27,27:934,972:-155.559,-79.6701,-71.5423,-76.2419,0,-68.1141	1/1:6:0,6,0:0:0:6,0:216,0:-19.7896,-1.80618,0,-19.7896,-1.80618,-19.7896	1/2:66:0,40,26:0:0:40,26:1370,932:-187.57,-76.3721,-64.3309,-111.55,0,-103.723	1/2:29:0,13,16:0:0:13,16:466,576:-85.3648,-47.3585,-43.4451,-38.3653,0,-33.5488	1/2:28:0,21,7:0:0:21,7:754,252:-82.4274,-20.9217,-14.6001,-61.8652,0,-59.758	1/1:40:0,40,0:0:0:40,0:1424,0:-128.457,-12.0412,0,-128.457,-12.0412,-128.457	1/1:36:0,36,0:0:0:36,0:1257,0:-113.428,-10.8371,0,-113.428,-10.8371,-113.428	1/2:137:0,74,63:0:0:74,63:2610,2250:-396.316,-183.798,-161.522,-212.873,0,-193.908	1/1:54:0,54,0:0:0:54,0:1897,0:-171.008,-16.2556,0,-171.008,-16.2556,-171.008	1/1:36:0,36,0:0:0:36,0:1265,0:-114.152,-10.8371,0,-114.152,-10.8371,-114.152	1/1:66:0,66,0:0:0:66,0:2276,0:-205.101,-19.868,0,-205.101,-19.868,-205.101	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:61:0,33,28:0:0:33,28:1174,1000:-177.563,-81.8864,-71.9524,-96.0326,0,-87.6037	1/2:28:0,13,15:0:0:13,15:454,540:-81.3449,-44.4211,-40.5077,-37.2779,0,-32.7625	1/1:108:0,108,0:0:0:108,0:3721,0:-335.089,-32.5112,0,-335.089,-32.5112,-335.089	1/2:43:0,25,17:0:0:25,17:885,612:-122.158,-50.0692,-42.5434,-72.2171,0,-67.0996	1/2:27:0,15,12:0:0:15,12:528,428:-78.2276,-35.2464,-30.731,-43.3356,0,-39.7232	1/1:30:0,30,0:0:0:30,0:1029,0:-92.9156,-9.0309,0,-92.9156,-9.0309,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chr07	24935428	.	A	G	20866.4	PASS	AB=0.512154;ABP=6.07184;AC=44;AF=0.234043;AN=188;AO=1227;CIGAR=1X;DP=5303;DPB=5303;DPRA=1.09574;EPP=2606.95;EPPR=8702.54;GTI=0;LEN=1;MEANALT=1.02041;MQM=59.9788;MQMR=59.9637;NS=94;NUMALT=1;ODDS=4.72445;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43796;QR=146095;RO=4074;RPL=1220;RPP=2606.95;RPPR=8702.54;RPR=7;RUN=1;SAF=0;SAP=2667.41;SAR=1227;SRF=0;SRP=8849.59;SRR=4074;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:10,13:10:360:13:464:-35.1738,0,-25.8206	0/1:37:18,19:18:644:19:680:-50.3895,0,-47.1525	0/1:100:50,50:50:1788:50:1792:-131.459,0,-131.086	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.481	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.222	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:101:42,59:42:1512:59:2103:-159.129,0,-105.971	0/0:107:107,0:107:3813:0:0:0,-32.2102,-343.367	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/1:58:27,31:27:972:31:1094:-81.3085,0,-70.3382	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:53:22,31:22:788:31:1112:-84.4368,0,-55.2902	0/1:47:31,16:31:1112:16:576:-38.0266,0,-86.2429	0/1:26:11,15:11:392:15:540:-41.1098,0,-27.7933	0/1:35:16,19:16:576:19:684:-51.3543,0,-41.6389	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:67:29,38:29:1035:38:1364:-102.892,0,-73.2941	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:80:79,0:79:2836:0:0:0,-23.7814,-255.104	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0438	0/1:81:38,43:38:1360:43:1541:-114.599,0,-98.3172	0/1:162:74,88:74:2660:88:3145:-234.507,0,-190.878	0/0:151:151,0:151:5423:0:0:0,-45.4555,-488.193	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.501	0/1:63:33,30:33:1188:30:1080:-78.5484,0,-88.2637	0/0:68:67,1:67:2408:1:36:0,-16.8718,-213.378	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.61	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1017	0/0:87:86,1:86:3083:1:36:0,-22.5913,-274.099	0/1:85:45,40:45:1616:40:1432:-103.59,0,-120.139	0/1:23:12,11:12:432:11:387:-28.2422,0,-32.2975	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:86:43,43:43:1548:43:1532:-112.285,0,-113.724	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:95:51,44:51:1832:44:1558:-111.912,0,-136.563	0/1:18:11,7:11:392:7:244:-16.8809,0,-30.2015	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5241	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/1:125:60,65:60:2143:65:2318:-171.252,0,-155.508	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:54:53,1:53:1908:1:36:0,-12.6573,-168.399	0/0:144:144,0:144:5149:0:0:0,-43.3483,-463.549	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:165:98,67:98:3512:67:2384:-165.147,0,-266.62	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:54:24,30:24:860:30:1072:-80.5322,0,-61.4662	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5991	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.51	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:136:136,0:136:4884:0:0:0,-40.9401,-439.702	0/0:208:206,1:206:7395:1:36:0,-59.0748,-661.995	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9907	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.306	0/1:92:36,56:36:1284:56:1975:-150.33,0,-88.1687	0/1:98:29,69:29:1044:69:2476:-193.592,0,-64.7739	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:44:26,18:26:936:18:644:-45.0453,0,-71.3141	0/1:18:5,13:5:180:13:464:-36.679,0,-11.1335	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:100:52,48:52:1868:48:1703:-123.452,0,-138.279	0/1:69:37,32:37:1332:32:1144:-82.4984,0,-99.4113	0/1:92:51,41:51:1823:41:1452:-103.279,0,-136.656	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:82:81,1:81:2903:1:27:0,-21.9847,-258.805	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:239:239,0:239:8592:0:0:0,-71.9462,-773.271	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/1:37:20,17:20:712:17:612:-44.2753,0,-53.2685	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	0/1:56:26,30:26:927:30:1080:-80.6556,0,-66.8897	0/1:35:18,17:18:644:17:612:-44.8774,0,-47.7545	0/0:40:40,0:40:1418:0:0:0,-12.0412,-127.916	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:36:14,22:14:500:22:773:-59.0533,0,-34.4991	0/1:25:9,16:9:324:16:572:-44.2861,0,-21.9767	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965
chr07	24970711	.	G	A	82689.1	PASS	AB=0.495403;ABP=4.86705;AC=47;AF=0.25;AN=188;AO=5037;CIGAR=1X;DP=18664;DPB=18664;DPRA=1.50042;EPP=10940.7;EPPR=29580.6;GTI=0;LEN=1;MEANALT=1.06452;MQM=52.7433;MQMR=59.4958;NS=94;NUMALT=1;ODDS=12.0658;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178482;QR=481736;RO=13621;RPL=0;RPP=10940.7;RPPR=29580.6;RPR=5037;RUN=1;SAF=0;SAP=10940.7;SAR=5037;SRF=0;SRP=29580.6;SRR=13621;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:16,9:16:558:9:320:-21.3614,0,-42.997	0/1:47:25,22:25:883:22:788:-56.9213,0,-65.6135	0/1:133:60,73:60:2152:73:2592:-191.865,0,-153.624	0/0:105:105,0:105:3703:0:0:0,-31.6081,-333.464	0/0:41:40,1:40:1416:1:32:0,-9.14496,-124.513	0/0:47:47,0:47:1670:0:0:0,-14.1484,-150.586	0/1:63:40,23:40:1414:23:815:-54.652,0,-108.584	0/0:74:74,0:74:2638:0:0:0,-22.2762,-237.645	0/0:95:92,3:92:3275:3:99:0,-19.38,-285.493	0/1:76:38,38:38:1347:38:1345:-98.2894,0,-98.6489	0/0:522:522,0:522:18397:0:0:0,-157.138,-1654.86	0/1:135:85,50:85:3003:50:1778:-118.364,0,-229.812	0/1:120:69,51:69:2412:51:1806:-126.086,0,-180.775	0/1:61:43,18:43:1513:18:640:-39.2188,0,-118.078	0/1:126:69,57:69:2425:57:2035:-144.977,0,-180.576	0/0:169:169,0:169:6008:0:0:0,-50.8741,-540.762	0/0:61:61,0:61:2161:0:0:0,-18.3628,-194.699	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.459	0/0:175:175,0:175:6209:0:0:0,-52.6802,-558.827	0/1:55:37,18:37:1315:18:640:-41.3332,0,-102.089	0/0:359:358,1:358:12608:1:36:0,-104.477,-1130.04	0/0:90:90,0:90:3193:0:0:0,-27.0927,-287.538	0/0:91:91,0:91:3220:0:0:0,-27.3937,-290.01	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.925	0/1:49:21,28:21:756:28:996:-74.4535,0,-53.6168	0/1:170:58,112:58:2054:112:3981:-306.476,0,-133.939	0/0:251:251,0:251:8916:0:0:0,-75.5585,-802.253	0/1:43:28,15:28:995:15:540:-35.905,0,-76.9151	0/0:224:224,0:224:7917:0:0:0,-67.4307,-712.488	0/1:60:24,36:24:832:36:1284:-97.5153,0,-57.132	0/0:117:116,0:116:4117:0:0:0,-34.9195,-370.367	0/0:606:600,5:600:21244:5:176:0,-166.317,-1894.72	0/0:270:269,1:269:9454:1:36:0,-77.8236,-847.159	0/1:824:246,578:246:8692:578:20438:-1577.09,0,-533.581	0/1:1186:455,731:455:15966:731:25888:-1959.64,0,-1078.74	0/1:822:418,403:418:14723:403:14265:-1028.67,0,-1075.68	0/0:259:259,0:259:9138:0:0:0,-77.9668,-822.351	0/1:111:63,48:63:2218:48:1720:-120.719,0,-166.437	0/1:274:181,93:181:6407:93:3291:-212.347,0,-494.197	0/1:419:208,211:208:7394:211:7459:-541.268,0,-539.116	0/1:48:36,12:36:1270:12:420:-23.6373,0,-100.121	0/0:328:327,1:327:11502:1:36:0,-95.1447,-1031.32	0/1:78:47,31:47:1654:31:1116:-76.3701,0,-125.626	0/1:60:44,16:44:1563:16:572:-33.7071,0,-122.885	0/1:71:51,20:51:1802:20:707:-42.5334,0,-140.524	0/0:116:116,0:116:4082:0:0:0,-34.9195,-366.702	0/0:82:82,0:82:2887:0:0:0,-24.6845,-260.052	0/1:158:93,65:93:3311:65:2284:-156.542,0,-250.632	0/0:113:113,0:113:4036:0:0:0,-34.0164,-363.368	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.961	0/0:107:107,0:107:3814:0:0:0,-32.2102,-343.39	0/1:414:250,164:250:8881:164:5840:-399.598,0,-674.54	0/1:70:38,32:38:1360:32:1152:-82.0329,0,-101.61	0/1:36:24,12:24:860:12:432:-28.3437,0,-66.8834	0/0:394:393,0:393:13896:0:0:0,-118.305,-1249.03	0/1:64:39,25:39:1392:25:896:-61.4576,0,-106.308	0/1:47:26,21:26:927:21:752:-53.6409,0,-69.5102	0/0:338:338,0:338:11905:0:0:0,-101.748,-1071.27	0/0:581:578,3:578:20481:3:108:0,-165.045,-1832.43	0/0:78:77,1:77:2716:1:36:0,-19.8872,-241.061	0/0:131:130,1:130:4617:1:36:0,-35.8392,-411.708	0/1:310:141,169:141:4985:169:5984:-444.036,0,-355.438	0/0:134:134,0:134:4779:0:0:0,-40.338,-430.218	0/0:172:172,0:172:6065:0:0:0,-51.7772,-544.722	0/1:26:16,10:16:561:10:351:-23.5662,0,-42.9903	0/0:26:26,0:26:909:0:0:0,-7.82678,-82.1232	0/1:119:71,48:71:2525:48:1688:-115.682,0,-190.889	0/1:132:55,77:55:1960:77:2703:-203.292,0,-136.88	0/1:309:195,114:195:6918:114:4057:-270.069,0,-529.438	0/0:33:33,0:33:1139:0:0:0,-9.93399,-102.755	0/1:100:50,50:50:1788:50:1783:-130.386,0,-131.096	0/1:684:388,296:388:13716:296:10479:-735.225,0,-1028.17	0/0:140:138,2:138:4883:2:72:0,-35.3346,-432.769	0/0:119:119,0:119:4210:0:0:0,-35.8226,-378.494	0/1:195:90,105:90:3190:105:3717:-274.707,0,-228.573	0/1:101:58,43:58:2056:43:1536:-107.814,0,-154.898	0/1:77:24,53:24:852:53:1858:-143.605,0,-53.8047	0/0:43:41,2:41:1455:2:72:0,-6.11616,-124.417	0/0:826:824,2:824:29162:2:72:0,-241.831,-2615.95	0/0:69:68,1:68:2389:1:36:0,-17.1779,-211.664	0/0:107:106,1:106:3741:1:36:0,-28.621,-333.073	0/0:277:277,0:277:9834:0:0:0,-83.3853,-884.946	0/0:98:97,1:97:3429:1:36:0,-25.9027,-305.209	0/1:132:61,71:61:2155:71:2539:-188.632,0,-154.393	0/1:88:49,38:49:1710:38:1333:-93.2656,0,-127.536	0/1:158:79,79:79:2807:79:2797:-203.822,0,-205.216	0/1:48:24,24:24:855:24:839:-60.8786,0,-62.8044	0/0:130:130,0:130:4606:0:0:0,-39.1339,-414.655	0/0:127:127,0:127:4478:0:0:0,-38.2308,-403.091	0/1:637:320,316:320:11367:316:11181:-811.834,0,-830.761	0/1:1052:610,442:610:21499:442:15638:-1086.03,0,-1617.41	0/1:102:38,64:38:1347:64:2288:-175.145,0,-90.8127	0/0:70:70,0:70:2486:0:0:0,-21.0721,-223.902	0/0:183:183,0:183:6497:0:0:0,-55.0885,-584.499
chr07	24970786	.	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chr07	24976178	.	C	T	0.00327848	PASS	AB=0.184871;ABP=2751.13;AC=31;AF=0.164894;AN=188;AO=758;CIGAR=1X;DP=11472;DPB=11472;DPRA=0.818906;EPP=1648.99;EPPR=23138;GTI=26;LEN=1;MEANALT=1.02083;MQM=26.5818;MQMR=26.6325;NS=94;NUMALT=1;ODDS=7.18855;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27023;QR=380363;RO=10706;RPL=0;RPP=1648.99;RPPR=23146.7;RPR=758;RUN=1;SAF=758;SAP=1648.99;SAR=0;SRF=10705;SRP=23242.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:52:47,5:47:1668:5:180:0,-3.47,-100.267	0/1:66:42,24:42:1500:24:860:-37.2967,0,-82.5828	0/0:57:50,7:50:1776:7:252:0,-0.372046,-105.617	0/0:233:233,0:233:8241:0:0:0,-70.14,-533.399	0/0:50:50,0:50:1780:0:0:0,-15.0515,-117.503	0/0:115:115,0:115:4070:0:0:0,-34.6184,-269.252	0/1:119:97,22:97:3461:22:788:-15.134,0,-192.345	0/0:159:159,0:159:5652:0:0:0,-47.8638,-375.885	0/0:142:142,0:142:5027:0:0:0,-42.7463,-330.865	0/1:114:95,19:95:3362:19:668:-9.24093,0,-185.007	0/0:90:90,0:90:3187:0:0:0,-27.0927,-205.701	0/0:151:143,8:143:5084:8:284:0,-26.5156,-327.843	0/0:138:122,16:122:4347:16:568:0,-2.67988,-257.586	0/0:114:104,10:104:3698:10:351:0,-10.49,-226.305	0/1:167:144,23:144:5145:23:817:-2.81874,0,-287.666	0/0:94:94,0:94:3342:0:0:0,-28.2968,-220.391	0/0:123:123,0:123:4392:0:0:0,-37.0267,-290.111	0/0:115:115,0:115:4103:0:0:0,-34.6184,-270.688	0/0:79:79,0:79:2823:0:0:0,-23.7814,-185.753	0/1:117:92,25:92:3288:25:900:-23.4069,0,-181.283	0/0:169:167,0:167:5946:0:0:0,-50.272,-393.072	0/0:128:127,0:127:4516:0:0:0,-38.2308,-299.785	0/0:110:110,0:110:3927:0:0:0,-33.1133,-251.808	0/0:159:159,0:159:5621:0:0:0,-47.8638,-375.64	0/0:59:56,3:56:1995:3:108:0,-10.3447,-127.614	0/0:348:309,39:309:10923:39:1377:0,-12.1984,-649.955	0/0:248:248,0:248:8835:0:0:0,-74.6554,-584.611	0/0:41:36,5:36:1284:5:180:0,-0.325829,-74.0116	0/0:387:386,0:386:13740:0:0:0,-116.198,-911.939	0/0:49:44,5:44:1568:5:180:0,-2.56691,-93.673	0/0:283:283,0:283:10003:0:0:0,-85.1915,-644.258	0/0:21:21,0:21:756:0:0:0,-6.32163,-48.6665	0/0:39:39,0:39:1392:0:0:0,-11.7402,-92.8834	0/0:24:23,1:23:811:1:36:0,-4.57612,-52.4861	0/1:54:39,15:39:1396:15:540:-19.6023,0,-77.5019	0/1:14:11,3:11:396:3:108:-3.20166,0,-22.6131	0/0:378:378,0:378:13505:0:0:0,-113.789,-889.911	0/1:191:150,41:150:5363:41:1457:-39.6941,0,-300.767	0/1:106:88,18:88:3135:18:644:-11.1996,0,-180.31	0/1:16:12,4:12:424:4:140:-4.9207,0,-23.6429	0/0:94:92,2:92:3279:2:68:0,-23.3288,-210.828	0/0:50:50,0:50:1784:0:0:0,-15.0515,-116.96	0/0:115:101,14:101:3590:14:504:0,-2.29678,-207.815	0/1:105:90,15:90:3203:15:536:-3.13966,0,-178.977	0/1:119:100,19:100:3538:19:675:-7.776,0,-194.211	0/0:112:112,0:112:3929:0:0:0,-33.7154,-263.053	0/0:35:35,0:35:1252:0:0:0,-10.536,-83.2488	0/1:179:153,26:153:5439:26:924:-6.2564,0,-303.782	0/0:161:161,0:161:5664:0:0:0,-48.4658,-364.92	0/0:221:221,0:221:7794:0:0:0,-66.5276,-501.435	0/0:181:181,0:181:6399:0:0:0,-54.4864,-426.003	0/0:4:4,0:4:140:0:0:0,-1.20412,-9.66292	0/1:56:40,16:40:1428:16:553:-20.7414,0,-75.772	0/1:42:34,8:34:1224:8:276:-6.43497,0,-69.7566	0/0:21:21,0:21:748:0:0:0,-6.32163,-49.2292	0/1:92:74,18:74:2644:18:639:-15.2518,0,-148.612	0/1:24:16,8:16:572:8:288:-11.4538,0,-30.2183	0/0:20:20,0:20:688:0:0:0,-6.0206,-46.9065	0/0:38:38,0:38:1351:0:0:0,-11.4391,-88.6863	0/0:115:115,0:115:4087:0:0:0,-34.6184,-272.044	0/0:217:217,0:217:7720:0:0:0,-65.3235,-495.938	0/1:14:12,2:12:432:2:72:-0.559912,0,-24.1592	0/0:249:249,0:249:8874:0:0:0,-74.9565,-585.913	0/0:181:179,2:179:6351:2:72:0,-49.6249,-404.609	0/0:52:49,3:49:1744:3:108:0,-8.23748,-109.305	0/0:67:66,0:66:2352:0:0:0,-19.868,-149.413	0/1:158:129,29:129:4574:29:1036:-19.6588,0,-253.822	0/1:53:41,12:41:1454:12:432:-12.017,0,-81.6909	0/1:24:21,3:21:747:3:108:-0.19136,0,-43.2695	0/0:53:53,0:53:1863:0:0:0,-15.9546,-124.939	0/1:233:186,47:186:6652:47:1692:-43.4103,0,-378.203	0/1:13:9,4:9:320:4:144:-5.55382,0,-17.0172	0/0:207:207,0:207:7359:0:0:0,-62.3132,-490.548	0/0:69:69,0:69:2455:0:0:0,-20.7711,-163.55	0/1:211:181,28:181:6404:28:1000:-3.3093,0,-364.85	0/1:144:115,29:115:4039:29:1028:-23.4864,0,-224.282	0/1:84:69,15:69:2455:15:532:-10.6116,0,-144.225	0/0:97:97,0:97:3460:0:0:0,-29.1999,-230.274	0/0:19:19,0:19:676:0:0:0,-5.71957,-45.4187	0/0:111:111,0:111:3940:0:0:0,-33.4143,-261.958	0/0:134:134,0:134:4720:0:0:0,-40.338,-313.564	0/0:300:299,0:299:10554:0:0:0,-90.008,-682.193	0/0:213:212,1:212:7559:1:36:0,-61.6525,-481.768	0/0:125:110,15:110:3920:15:532:0,-3.01478,-223.009	0/1:226:193,33:193:6846:33:1168:-7.88006,0,-382.197	0/0:287:254,33:254:9014:33:1179:0,-10.4233,-516.365	0/1:92:78,14:78:2787:14:499:-5.89645,0,-162.495	0/0:140:140,0:140:5004:0:0:0,-42.1442,-328.404	0/0:127:127,0:127:4520:0:0:0,-38.2308,-298.227	0/1:67:54,13:54:1928:13:468:-11.0845,0,-110.682	0/1:147:117,30:117:4158:30:1080:-27.1939,0,-237.444	0/1:139:113,26:113:4006:26:936:-18.2003,0,-223.899	0/0:93:93,0:93:3301:0:0:0,-27.9958,-212.331	0/0:223:223,0:223:7940:0:0:0,-67.1297,-506.141
chr07	24976214	.	G	A	114234	PASS	AB=0.541996;ABP=76.6941;AC=141;AF=0.75;AN=188;AO=9072;CIGAR=1X;DP=11291;DPB=11291;DPRA=0;EPP=19702.6;EPPR=4808.48;GTI=6;LEN=1;MEANALT=1.06383;MQM=26.4422;MQMR=27.6435;NS=94;NUMALT=1;ODDS=0.719976;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=323877;QR=78721;RO=2213;RPL=9072;RPP=19702.6;RPPR=4808.48;RPR=0;RUN=1;SAF=9072;SAP=19702.6;SAR=0;SRF=2213;SRP=4808.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:11,40:11:396:40:1432:-79.5669,0,-12.2311	0/1:66:41,25:41:1472:25:896:-39.9278,0,-80.0746	0/1:56:38,18:38:1356:18:644:-26.0041,0,-76.7656	1/1:227:1,226:1:36:226:8070:-516.116,-65.5976,0	1/1:50:0,50:0:0:50:1788:-117.625,-15.0515,0	1/1:117:0,117:0:0:117:4177:-274.529,-35.2205,0	0/1:113:55,57:55:1953:57:2032:-97.5032,0,-97.7991	1/1:157:0,157:0:0:157:5603:-372.007,-47.2617,0	1/1:143:2,141:2:72:141:5029:-323.382,-37.6872,0	0/1:107:45,62:45:1612:62:2224:-110.622,0,-75.5474	1/1:90:0,90:0:0:90:3212:-204.955,-27.0927,0	0/1:149:57,92:57:2002:92:3300:-174.208,0,-97.1085	0/1:138:71,67:71:2531:67:2404:-116.817,0,-135.764	0/1:113:54,59:54:1936:59:2088:-105.517,0,-98.2872	0/1:163:80,83:80:2854:83:2972:-142.685,0,-143.004	1/1:90:0,90:0:0:90:3178:-211.832,-27.0927,0	1/1:121:0,121:0:0:121:4299:-284.898,-36.4246,0	1/1:113:0,113:0:0:113:4000:-265.873,-34.0164,0	1/1:78:0,78:0:0:78:2796:-183.594,-23.4803,0	0/1:120:56,64:56:2004:64:2296:-111.653,0,-98.0633	1/1:164:0,164:0:0:164:5836:-386.238,-49.3689,0	1/1:127:0,127:0:0:127:4544:-300.355,-38.2308,0	1/1:108:0,108:0:0:108:3864:-247.394,-32.5112,0	1/1:157:0,157:0:0:157:5629:-372.602,-47.2617,0	0/1:61:30,31:30:1056:31:1112:-55.4086,0,-55.0498	0/1:341:159,182:159:5639:182:6491:-324.186,0,-291.252	1/1:243:0,243:0:0:243:8658:-575.403,-73.1503,0	0/1:41:13,28:13:460:28:995:-54.1356,0,-19.1549	1/1:382:0,382:0:0:382:13609:-905.022,-114.993,0	0/1:48:21,27:21:743:27:960:-49.8286,0,-36.8062	1/1:273:1,272:1:36:272:9727:-619.811,-79.445,0	1/1:21:0,21:0:0:21:752:-48.6053,-6.32163,0	1/1:38:0,38:0:0:38:1337:-89.8561,-11.4391,0	0/1:23:7,16:7:252:16:572:-30.8349,0,-10.9735	0/1:52:28,24:28:996:24:864:-41.8211,0,-52.8267	0/1:12:8,4:8:288:4:140:-5.51499,0,-16.6668	1/1:383:0,383:0:0:383:13687:-904.621,-115.294,0	0/1:184:96,88:96:3452:88:3149:-154.588,0,-175.69	0/1:104:47,57:47:1671:57:2035:-103.062,0,-84.4998	0/1:15:9,6:9:320:6:212:-9.73762,0,-17.5278	0/1:92:31,61:31:1108:61:2160:-116.204,0,-48.6234	1/1:47:0,47:0:0:47:1676:-109.932,-14.1484,0	0/1:112:40,72:40:1436:72:2567:-136.122,0,-62.6489	0/1:105:42,63:42:1488:63:2247:-112.746,0,-68.9091	0/1:114:42,72:42:1463:72:2566:-129.216,0,-65.6149	1/1:108:0,108:0:0:108:3830:-254.27,-32.5112,0	1/1:33:0,33:0:0:33:1184:-78.6236,-9.93399,0	0/1:176:79,97:79:2820:97:3442:-169.194,0,-136.863	1/1:161:0,160:0:0:160:5704:-364.742,-48.1648,0	1/1:216:0,216:0:0:216:7705:-491.308,-65.0225,0	1/1:177:0,177:0:0:177:6329:-418.859,-53.2823,0	0/1:4:1,3:1:36:3:108:-6.04416,0,-1.53208	0/1:55:23,32:23:828:32:1144:-57.1916,0,-39.3764	0/1:43:12,31:12:428:31:1116:-61.9931,0,-15.9306	1/1:20:0,20:0:0:20:709:-47.1496,-6.0206,0	0/1:93:40,53:40:1397:53:1887:-96.9393,0,-67.9639	0/1:22:10,12:10:360:12:428:-21.2165,0,-16.9846	1/1:20:0,20:0:0:20:708:-47.6039,-6.0206,0	1/1:35:0,35:0:0:35:1260:-81.9629,-10.5361,0	1/1:113:0,112:0:0:112:3996:-265.354,-33.7154,0	1/1:217:1,216:1:36:216:7735:-492.004,-62.5873,0	0/1:14:5,9:5:165:9:324:-16.767,0,-7.30359	1/1:248:0,248:0:0:248:8868:-585.763,-74.6554,0	1/1:184:3,181:3:108:181:6465:-406.822,-48.0595,0	0/1:53:12,41:12:432:41:1453:-80.7441,0,-13.4722	1/1:65:0,64:0:0:64:2279:-145.171,-19.2659,0	0/1:152:60,92:60:2127:92:3281:-165.745,0,-97.3281	0/1:53:39,14:39:1372:14:480:-15.8194,0,-77.0074	0/1:24:9,15:9:315:15:540:-28.7962,0,-14.6658	1/1:50:0,50:0:0:50:1777:-118.194,-15.0515,0	0/1:233:119,114:119:4237:114:4093:-197.716,0,-223.181	0/1:13:4,9:4:144:9:324:-17.068,0,-5.55382	1/1:203:0,203:0:0:203:7259:-482.196,-61.1091,0	1/1:68:0,68:0:0:68:2428:-161.391,-20.47,0	0/1:205:80,125:80:2829:125:4454:-232.083,0,-131.388	0/1:143:63,80:63:2264:80:2862:-140.404,0,-107.569	0/1:81:51,30:51:1832:30:1076:-47.0888,0,-102.967	1/1:96:0,96:0:0:96:3436:-227.879,-28.8989,0	1/1:18:0,18:0:0:18:648:-43.1701,-5.41854,0	1/1:106:0,106:0:0:106:3793:-250.503,-31.9092,0	1/1:132:0,131:0:0:131:4640:-306.703,-39.4349,0	1/1:296:2,294:2:72:294:10484:-667.199,-83.8255,0	1/1:209:0,209:0:0:209:7477:-478.906,-62.9153,0	0/1:125:51,74:51:1802:74:2647:-132.265,0,-84.4694	0/1:221:101,119:101:3599:119:4241:-204.243,0,-176.108	0/1:287:130,157:130:4600:157:5620:-272.162,0,-224.064	0/1:91:41,50:41:1463:50:1796:-91.916,0,-74.5689	1/1:138:0,138:0:0:138:4946:-323.899,-41.5421,0	1/1:126:0,126:0:0:126:4515:-297.626,-37.9298,0	0/1:66:40,26:40:1423:26:919:-42.0265,0,-77.5515	0/1:142:76,66:76:2702:66:2372:-114.832,0,-141.496	0/1:134:74,60:74:2626:60:2144:-96.7568,0,-137.085	1/1:92:2,90:2:72:90:3223:-201.053,-22.7518,0	1/1:221:0,221:0:0:221:7899:-504.102,-66.5276,0
chr07	24994102	.	T	C	14604.8	PASS	AB=0.488199;ABP=4.95788;AC=46;AF=0.244681;AN=188;AO=797;CIGAR=1X;DP=3318;DPB=3318;DPRA=1.11235;EPP=1215.14;EPPR=2417.72;GTI=0;LEN=1;MEANALT=1;MQM=59.9749;MQMR=59.9651;NS=94;NUMALT=1;ODDS=4.69652;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28262;QR=90185;RO=2520;RPL=732;RPP=1215.14;RPPR=2417.72;RPR=65;RUN=1;SAF=797;SAP=1733.67;SAR=0;SRF=2520;SRP=5475.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:6,7:6:212:7:248:-18.7508,0,-15.5114	0/1:30:14,16:14:491:16:576:-43.1441,0,-35.4902	0/1:43:26,17:26:936:17:584:-39.9365,0,-71.6152	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.556	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:27:19,8:19:676:8:279:-17.3197,0,-53.0402	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/1:36:19,17:19:684:17:596:-43.1307,0,-51.0532	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:70:41,29:41:1459:29:1028:-71.7609,0,-110.533	0/1:36:14,22:14:504:22:783:-59.9559,0,-34.861	0/1:29:18,11:18:644:11:392:-26.8902,0,-49.5607	0/1:45:23,22:23:819:22:788:-57.6984,0,-60.4852	0/0:43:43,0:43:1509:0:0:0,-12.9443,-136.094	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:54:29,25:29:1040:25:896:-64.7047,0,-77.6587	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/1:82:49,33:49:1760:33:1171:-81.0122,0,-133.999	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:19:12,7:12:432:7:248:-16.9446,0,-33.5016	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:56:34,22:34:1224:22:780:-53.6654,0,-93.6094	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:6:0,6:0:0:6:197:-18.0513,-1.80618,0	0/1:10:5,5:5:176:5:180:-13.5418,0,-12.2183	0/0:97:97,0:97:3475:0:0:0,-29.1999,-312.961	0/1:42:20,22:20:720:22:792:-58.9624,0,-52.4855	0/1:31:18,13:18:648:13:464:-32.7656,0,-49.32	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:39:20,19:20:716:19:680:-49.789,0,-53.0275	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:55:29,26:29:1040:26:928:-67.2816,0,-77.3577	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	0/1:43:18,25:18:648:25:879:-66.4825,0,-45.7076	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:30:29,0:29:1026:0:0:0,-8.72987,-92.2917	0/1:37:13,24:13:468:24:851:-65.7713,0,-31.3215	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:55:54,1:54:1935:1:36:0,-12.9584,-170.827	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:25:16,9:16:572:9:324:-21.9801,0,-44.2877	0/1:30:13,17:13:464:17:608:-46.0211,0,-33.0666	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:73:36,37:36:1292:37:1295:-94.874,0,-94.6086	0/1:26:8,18:8:288:18:635:-49.6502,0,-18.4406	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:71:71,0:71:2530:0:0:0,-21.3731,-227.951	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:50:29,21:29:1029:21:743:-52.1418,0,-77.8696	0/1:54:20,34:20:716:34:1207:-92.6797,0,-48.5121	0/1:32:19,13:19:684:13:444:-30.6511,0,-52.2574	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.377	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2693	0/1:39:19,20:19:680:20:716:-53.0275,0,-49.789	0/1:30:15,15:15:527:15:536:-39.5439,0,-38.7293	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:31:31,0:31:1099:0:0:0,-9.33193,-99.2195	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:38:37,1:37:1332:1:36:0,-7.84086,-116.584	0/1:50:28,22:28:999:22:784:-55.8324,0,-75.173	0/1:32:19,13:19:676:13:464:-32.4645,0,-51.535	0/1:79:41,38:41:1467:38:1347:-97.7481,0,-108.544	0/1:11:3,8:3:108:8:273:-21.5889,0,-6.76384	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/1:41:14,27:14:485:27:951:-73.5609,0,-31.6347	0/1:62:34,28:34:1220:28:999:-71.5417,0,-91.4429	0/1:42:11,31:11:396:31:1088:-85.5832,0,-23.3395	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068
chr07	24995588	.	TA	CA,CG	257516	PASS	AB=0.478176,0.520039;ABP=28.506,24.5062;AC=141,47;AF=0.75,0.25;AN=188;AO=9096,3226;CIGAR=1X1M,2X;DP=12339;DPB=12339;DPRA=33.1586,1.16082;EPP=19754.7,7008.18;EPPR=5.18177;GTI=1;LEN=1,2;MEANALT=1.76344,2.21429;MQM=53.7865,39.8865;MQMR=60;NS=94;NUMALT=2;ODDS=1.21145;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=323997,113881;QR=25;RO=1;RPL=9096,3226;RPP=19754.7,7008.18;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=19754.7,7008.18;SAR=9096,3226;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:47:0,16,31:0:0:16,31:561,1089:-126.612,-81.3338,-76.5173,-45.6179,0,-36.286	1/2:218:0,91,127:0:0:91,127:3260,4485:-601.383,-336.915,-309.521,-264.813,0,-226.582	1/2:141:0,41,100:0:0:41,100:1475,3497:-378.841,-259.346,-247.004,-119.841,0,-89.7385	1/1:196:0,196,0:0:0:196,0:6984,0:-627.429,-59.0019,0,-627.429,-59.0019,-627.429	1/1:79:0,79,0:0:0:79,0:2828,0:-253.797,-23.7814,0,-253.797,-23.7814,-253.797	1/1:96:0,96,0:0:0:96,0:3432,0:-306.897,-28.8989,0,-306.897,-28.8989,-306.897	1/2:166:0,91,75:0:0:91,75:3249,2640:-472.539,-208.208,-180.814,-264.68,0,-242.103	1/1:217:1,216,0:1:25:216,0:7641,0:-680.775,-62.8236,0,-681.076,-65.0225,-683.024	1/1:127:0,127,0:0:0:127,0:4533,0:-405.446,-38.2308,0,-405.446,-38.2308,-405.446	1/2:166:0,84,80:0:0:84,80:2999,2840:-465.719,-222.143,-196.857,-243.576,0,-219.494	1/1:82:0,82,0:0:0:82,0:2952,0:-265.404,-24.6845,0,-265.404,-24.6845,-265.404	1/2:106:0,59,47:0:0:59,47:2120,1654:-296.596,-125.089,-107.328,-171.848,0,-157.7	1/2:79:0,43,36:0:0:43,36:1532,1290:-220.406,-96.6745,-83.7302,-124.073,0,-113.236	1/2:106:0,61,45:0:0:61,45:2180,1562:-296.027,-118.882,-100.52,-177.483,0,-163.937	1/2:68:0,32,36:0:0:32,36:1152,1275:-193.608,-99.6764,-90.0434,-94.2822,0,-83.4451	1/1:67:0,66,0:0:0:66,0:2353,0:-211.327,-19.868,0,-211.327,-19.868,-211.327	1/1:110:0,110,0:0:0:110,0:3940,0:-353.702,-33.1133,0,-353.702,-33.1133,-353.702	1/1:97:0,97,0:0:0:97,0:3472,0:-310.902,-29.1999,0,-310.902,-29.1999,-310.902	1/1:52:0,52,0:0:0:52,0:1864,0:-166.58,-15.6536,0,-166.58,-15.6536,-166.58	1/2:164:0,76,87:0:0:76,87:2720,3095:-462.768,-241.159,-218.281,-221.609,0,-195.419	1/1:171:0,171,0:0:0:171,0:6054,0:-542.429,-51.4761,0,-542.429,-51.4761,-542.429	1/1:123:0,123,0:0:0:123,0:4366,0:-392.661,-37.0267,0,-392.661,-37.0267,-392.661	1/1:130:0,128,2:0:0:128,2:4539,72:-407.335,-38.5318,0,-401.632,-32.4788,-401.03	1/1:150:0,148,2:0:0:148,2:5276,72:-472.484,-44.5524,0,-466.868,-38.591,-466.266	1/2:76:0,34,42:0:0:34,42:1201,1467:-211.975,-114.563,-104.328,-97.7569,0,-85.1136	1/2:559:0,296,262:0:0:296,262:10521,9327:-1593.68,-738.487,-649.383,-855.196,0,-776.326	1/1:278:0,278,0:0:0:278,0:9948,0:-891.457,-83.6863,0,-891.457,-83.6863,-891.457	1/2:42:0,20,22:0:0:20,22:714,775:-118.225,-60.6739,-54.6533,-57.8969,0,-51.2742	1/1:274:0,273,0:0:0:273,0:9721,0:-873.648,-82.1812,0,-873.648,-82.1812,-873.648	1/2:297:0,149,148:0:0:149,148:5311,5222:-831.942,-401.392,-356.539,-430.894,0,-386.342	1/1:182:0,180,2:0:0:180,2:6438,72:-577.761,-54.1854,0,-572.058,-48.1323,-571.456	1/1:6:0,6,0:0:0:6,0:216,0:-19.7624,-1.80618,0,-19.7624,-1.80618,-19.7624	1/1:27:0,27,0:0:0:27,0:948,0:-85.5159,-8.12781,0,-85.5159,-8.12781,-85.5159	1/2:8:0,4,4:0:0:4,4:144,129:-21.0578,-9.40358,-8.19946,-11.9756,0,-10.7715	1/1:10:0,9,1:0:0:9,1:324,25:-29.1671,-2.70927,0,-27.2482,-0.531473,-26.9472	1/2:9:0,7,2:0:0:7,2:252,70:-26.2337,-5.70794,-3.60073,-20.8639,0,-20.2618	1/1:289:0,287,1:0:0:287,1:10240,36:-920.104,-86.3956,0,-917.252,-83.4724,-916.951	1/2:357:0,172,184:0:0:172,184:6101,6436:-992.665,-498.349,-446.571,-494.315,0,-438.925	1/2:86:0,57,29:0:0:57,29:2048,1029:-244.625,-78.5907,-61.432,-166.376,0,-157.646	2/2:4:0,0,4:0:0:0,4:0,133:-11.8791,-11.8791,-11.8791,-1.20412,-1.20412,0	1/2:173:0,84,89:0:0:84,89:3005,3161:-488.98,-244.817,-219.531,-244.51,0,-217.719	1/1:36:0,36,0:0:0:36,0:1296,0:-116.296,-10.8371,0,-116.296,-10.8371,-116.296	1/2:247:0,103,144:0:0:103,144:3673,5097:-692.082,-393.765,-362.759,-298.665,0,-255.317	1/2:97:0,55,42:0:0:55,42:1957,1492:-275.036,-115.937,-99.3808,-159.445,0,-146.802	1/2:74:0,39,35:0:0:39,35:1400,1207:-207.859,-93.8172,-82.0771,-114.385,0,-103.849	1/1:99:0,99,0:0:0:99,0:3528,0:-317.257,-29.802,0,-317.257,-29.802,-317.257	1/1:153:0,153,0:0:0:153,0:5448,0:-486.786,-46.0576,0,-486.786,-46.0576,-486.786	1/2:255:0,126,127:0:0:126,127:4483,4493:-715.696,-351.925,-313.995,-363.769,0,-325.538	1/1:174:0,174,0:0:0:174,0:6204,0:-557.191,-52.3792,0,-557.191,-52.3792,-557.191	1/1:171:0,171,0:0:0:171,0:6090,0:-547.14,-51.4761,0,-547.14,-51.4761,-547.14	1/1:188:0,187,1:0:0:187,1:6641,36:-595.48,-56.2926,0,-592.598,-53.0575,-592.297	1/2:9:0,3,6:0:0:3,6:108,214:-26.1037,-17.306,-16.4029,-9.15303,0,-7.34685	1/2:164:0,88,76:0:0:88,76:3146,2702:-459.85,-204.628,-178.138,-255.565,0,-232.686	1/2:104:0,45,59:0:0:45,59:1607,2105:-297.646,-167.408,-153.862,-130.59,0,-112.829	1/1:72:0,72,0:0:0:72,0:2534,0:-226.694,-21.6742,0,-226.694,-21.6742,-226.694	1/2:139:0,66,73:0:0:66,73:2340,2560:-385.436,-195.848,-175.98,-189.93,0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chr07	25015265	.	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chr07	25015296	.	T	A	29444.4	PASS	AB=0.45928;ABP=59.4237;AC=46;AF=0.244681;AN=188;AO=1809;CIGAR=1X;DP=8246;DPB=8246;DPRA=1.14695;EPP=3931.2;EPPR=13876.7;GTI=1;LEN=1;MEANALT=1.06;MQM=59.9956;MQMR=59.9851;NS=94;NUMALT=1;ODDS=9.47237;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64785;QR=229946;RO=6429;RPL=1809;RPP=3931.2;RPPR=13876.7;RPR=0;RUN=1;SAF=0;SAP=3931.2;SAR=1809;SRF=0;SRP=13963.4;SRR=6429;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:17,15:17:612:15:540:-39.2954,0,-45.7805	0/1:129:68,61:68:2436:61:2164:-156.192,0,-180.548	0/1:156:67,89:67:2412:89:3192:-240.542,0,-170.375	0/0:185:185,0:185:6615:0:0:0,-55.6905,-595.425	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:84:51,33:51:1817:33:1184:-81.5818,0,-138.523	0/0:155:153,2:153:5466:2:57:0,-41.2463,-486.652	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:125:64,61:64:2255:61:2188:-159.557,0,-165.58	0/0:51:51,0:51:1821:0:0:0,-15.3525,-164.169	0/1:35:21,14:21:756:14:504:-35.162,0,-57.8312	0/1:54:29,25:29:1044:25:900:-65.0654,0,-78.0192	0/1:77:33,44:33:1184:44:1572:-118.592,0,-83.689	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9624	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:83:82,0:82:2918:0:0:0,-24.6845,-262.493	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/1:179:95,84:95:3375:84:3020:-218.146,0,-250.078	0/0:154:154,0:154:5506:0:0:0,-46.3586,-495.663	0/0:149:149,0:149:5334:0:0:0,-44.8535,-480.189	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:130:129,1:129:4614:1:36:0,-35.5356,-411.822	0/1:78:44,34:44:1556:34:1220:-86.6265,0,-116.849	0/1:315:159,155:159:5630:155:5572:-406.717,0,-411.933	0/0:151:151,0:151:5417:0:0:0,-45.4555,-487.657	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/0:230:227,0:227:8104:0:0:0,-68.3338,-729.012	0/1:172:106,66:106:3812:66:2361:-160.969,0,-291.499	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:103:103,0:103:3689:0:0:0,-31.0061,-332.211	0/1:263:157,106:157:5614:106:3786:-261.768,0,-426.203	0/1:27:14,13:14:504:13:464:-33.9697,0,-37.5703	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:137:82,55:82:2948:55:1976:-136.874,0,-224.312	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:135:80,55:80:2831:55:1976:-137.476,0,-214.386	0/1:32:14,18:14:504:18:644:-48.6576,0,-36.0651	0/1:42:21,21:21:741:21:756:-55.724,0,-54.3683	0/0:77:76,0:76:2732:0:0:0,-22.8783,-245.762	0/0:129:129,0:129:4617:0:0:0,-38.8329,-415.692	0/1:207:107,100:107:3848:100:3592:-261.172,0,-284.201	0/0:137:137,0:137:4897:0:0:0,-41.2411,-440.881	0/0:179:178,1:178:6384:1:36:0,-50.2861,-571.047	0/0:169:167,1:167:5989:1:36:0,-47.3346,-535.514	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:145:90,55:90:3240:55:1967:-133.656,0,-248.163	0/1:66:49,17:49:1760:17:608:-35.184,0,-138.816	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/1:139:53,85:53:1885:85:2995:-227.878,0,-128.025	0/1:15:6,9:6:212:9:324:-24.9904,0,-14.9093	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:89:89,0:89:3185:0:0:0,-26.7917,-286.872	0/0:112:111,1:111:3947:1:36:0,-30.1171,-351.82	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:183:183,0:183:6527:0:0:0,-55.0885,-587.321	0/0:238:238,0:238:8511:0:0:0,-71.6451,-765.981	0/1:100:66,34:66:2353:34:1224:-80.364,0,-181.924	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/1:142:90,52:90:3205:52:1872:-126.013,0,-245.926	0/1:106:54,52:54:1940:52:1857:-135.499,0,-142.967	0/1:26:11,15:11:381:15:540:-41.1098,0,-26.7939	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:102:51,51:51:1832:51:1836:-134.816,0,-134.456	0/1:29:16,13:16:576:13:442:-31.374,0,-43.4451	0/0:137:137,0:137:4920:0:0:0,-41.2411,-442.949	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:79:53,26:53:1893:26:928:-60.0569,0,-146.865	0/1:109:43,66:43:1514:66:2357:-179.575,0,-103.737	0/1:164:88,76:88:3153:76:2727:-196.304,0,-234.624	0/0:98:98,0:98:3501:0:0:0,-29.5009,-315.299	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:129:129,0:129:4591:0:0:0,-38.8329,-413.352	0/0:166:166,0:166:5927:0:0:0,-49.971,-533.449	0/0:88:88,0:88:3153:0:0:0,-26.4906,-283.993	0/1:50:26,24:26:936:24:860:-62.6703,0,-69.508	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:71:39,32:39:1404:32:1152:-82.617,0,-105.286	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.194	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:28:20,8:20:716:8:288:-17.8386,0,-56.3389	0/1:92:49,43:49:1764:43:1544:-111.558,0,-131.349	0/1:30:10,20:10:360:20:720:-56.0979,0,-23.7134	0/0:124:124,0:124:4460:0:0:0,-37.3277,-401.566	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951
chr07	25083220	.	TGTCG	CGTTG,TGTTG	169474	PASS	AB=0.468782,0.525333;ABP=36.0914,24.7939;AC=139,49;AF=0.739362,0.260638;AN=188;AO=6017,2079;CIGAR=1X2M1X1M,3M1X1M;DP=8156;DPB=8158.2;DPRA=24.4106,1.15711;EPP=13060.1,4517.5;EPPR=5.18177;GTI=0;LEN=5,1;MEANALT=2.13187,2.49091;MQM=59.8682,59.9808;MQMR=60;NS=94;NUMALT=2;ODDS=2.83677;PAIRED=0,0;PAIREDR=0;PAO=6.5,0;PQA=227.5,0;PQR=0;PRO=0;QA=209488,74128;QR=31;RO=1;RPL=6015,2079;RPP=13051.4,4517.5;RPPR=5.18177;RPR=2,0;RUN=1,1;SAF=6016,2079;SAP=13060.1,4517.5;SAR=1,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:49:0,28,21:0:0:28,21:971,733:-138.892,-59.968,-51.5392,-79.272,0,-72.9504	1/2:69:0,38,30:0:0:38,30:1353,1070:-197.497,-87.2216,-75.7824,-110.272,0,-101.241	1/2:158:0,68,90:0:0:68,90:2349,3204:-452.321,-261.489,-241.019,-191.182,0,-164.09	1/1:216:0,215,0:0:0:215,0:7515,0:-675.927,-64.7215,0,-675.927,-64.7215,-675.927	1/1:39:0,39,0:0:0:39,0:1347,0:-121.524,-11.7402,0,-121.524,-11.7402,-121.524	1/1:31:0,31,0:0:0:31,0:1088,0:-98.2281,-9.33193,0,-98.2281,-9.33193,-98.2281	1/2:68:0,36,32:0:0:36,32:1258,1134:-195.065,-92.7343,-81.8972,-102.682,0,-93.0492	1/1:154:0,153,0:0:0:153,0:5319,0:-478.422,-46.0576,0,-478.422,-46.0576,-478.422	1/1:72:0,71,0:0:0:71,0:2500,0:-224.894,-21.3731,0,-224.894,-21.3731,-224.894	1/2:95:0,56,37:0:0:56,37:1956,1319:-266.676,-107.584,-90.7268,-159.156,0,-148.018	1/1:124:0,124,0:0:0:124,0:4344,0:-391.137,-37.3277,0,-391.137,-37.3277,-391.137	1/2:101:0,59,40:0:0:59,40:1984,1424:-276.849,-116.156,-98.3957,-160.779,0,-148.738	1/2:75:1,39,34:1:31:39,34:1371,1211:-207.438,-96.15,-86.8971,-109.12,0,-101.372	1/2:116:0,51,65:0:0:51,65:1764,2315:-332.322,-188.984,-173.631,-143.63,0,-124.063	1/2:68:0,36,31:0:0:36,31:1278,1103:-194.038,-89.9071,-79.07,-104.146,0,-94.8136	1/1:80:0,79,1:0:0:79,1:2757,36:-248.008,-23.7814,0,-245.07,-20.4841,-244.769	1/1:52:0,52,0:0:0:52,0:1827,0:-164.709,-15.6536,0,-164.709,-15.6536,-164.709	1/1:29:0,28,0:0:0:28,0:958,0:-86.2076,-8.42884,0,-86.2076,-8.42884,-86.2076	1/1:32:0,32,0:0:0:32,0:1110,0:-100.146,-9.63296,0,-100.146,-9.63296,-100.146	1/2:216:0,90,125:0:0:90,125:3120,4431:-614.655,-361.07,-333.978,-253.673,0,-216.044	1/1:137:0,137,0:0:0:137,0:4705,0:-423.554,-41.2411,0,-423.554,-41.2411,-423.554	1/1:85:0,84,0:0:0:84,0:2892,0:-260.295,-25.2865,0,-260.295,-25.2865,-260.295	1/1:138:0,138,0:0:0:138,0:4835,0:-435.253,-41.5421,0,-435.253,-41.5421,-435.253	1/1:39:0,39,0:0:0:39,0:1377,0:-124.22,-11.7402,0,-124.22,-11.7402,-124.22	1/2:63:0,31,32:0:0:31,32:1096,1148:-183.259,-93.9969,-84.6649,-89.6182,0,-79.9853	1/2:193:0,72,118:0:0:72,118:2499,4244:-549.402,-346.264,-324.59,-203.155,0,-167.634	1/1:138:0,137,0:0:0:137,0:4767,0:-428.65,-41.2411,0,-428.65,-41.2411,-428.65	1/2:28:0,13,15:0:0:13,15:448,528:-79.7231,-43.3359,-39.4225,-36.7351,0,-32.2197	1/1:246:0,243,1:0:0:243,1:8447,36:-759.897,-73.1503,0,-756.959,-70.1946,-756.658	1/2:133:0,80,52:0:0:80,52:2805,1841:-378.232,-149.984,-125.902,-228.269,0,-212.616	1/1:71:0,71,0:0:0:71,0:2476,0:-223.093,-21.3731,0,-223.093,-21.3731,-223.093	1/1:6:0,6,0:0:0:6,0:202,0:-18.4012,-1.80618,0,-18.4012,-1.80618,-18.4012	1/1:18:0,18,0:0:0:18,0:617,0:-55.8506,-5.41854,0,-55.8506,-5.41854,-55.8506	2/2:6:0,0,6:0:0:0,6:0,216:-19.7905,-19.7905,-19.7905,-1.80618,-1.80618,0	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/1:156:0,156,0:0:0:156,0:5427,0:-488.561,-46.9607,0,-488.561,-46.9607,-488.561	1/2:131:0,66,64:0:0:66,64:2237,2287:-367.511,-186.514,-166.646,-181.034,0,-161.768	1/2:76:0,40,36:0:0:40,36:1384,1277:-216.82,-104.394,-92.3528,-112.777,0,-101.94	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:117:0,52,65:0:0:52,65:1840,2321:-339.453,-189.581,-173.928,-150.227,0,-130.66	1/1:40:0,40,0:0:0:40,0:1387,0:-125.123,-12.0412,0,-125.123,-12.0412,-125.123	1/2:125:0,63,60:0:0:63,60:2176,2156:-352.719,-175.938,-156.974,-176.826,0,-158.764	1/2:80:0,39,41:0:0:39,41:1347,1464:-229.146,-119.714,-107.974,-109.783,0,-97.4411	1/2:46:0,23,23:0:0:23,23:790,806:-130.079,-65.9345,-59.0108,-64.491,0,-57.5673	1/1:82:0,82,0:0:0:82,0:2851,0:-256.829,-24.6845,0,-256.829,-24.6845,-256.829	1/1:114:0,114,0:0:0:114,0:3973,0:-357.765,-34.3174,0,-357.765,-34.3174,-357.765	1/2:145:0,64,80:0:0:64,80:2195,2854:-410.994,-232.803,-213.537,-178.327,0,-154.244	1/1:80:0,78,0:0:0:78,0:2703,0:-243.154,-23.4803,0,-243.154,-23.4803,-243.154	1/1:118:0,115,0:0:0:115,0:4066,0:-365.825,-34.6185,0,-365.825,-34.6185,-365.825	1/1:95:0,93,0:0:0:93,0:3235,0:-291.112,-27.9958,0,-291.112,-27.9958,-291.112	1/2:18:0,11,7:0:0:11,7:376,252:-51.4256,-20.9217,-17.6104,-30.8566,0,-28.7494	1/2:136:0,64,71:0:0:64,71:2278,2541:-392.858,-207.206,-187.94,-185.649,0,-164.276	1/2:80:0,42,38:0:0:42,38:1449,1359:-228.878,-111.171,-98.5274,-118.058,0,-106.619	1/1:8:0,8,0:0:0:8,0:265,0:-24.1712,-2.40824,0,-24.1712,-2.40824,-24.1712	1/2:112:0,47,64:0:0:47,64:1608,2277:-316.056,-185.555,-171.406,-130.48,0,-111.214	1/2:46:0,24,22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chr07	25095740	.	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chr07	25095871	.	G	A	12421.6	PASS	AB=0.481184;ABP=7.99491;AC=47;AF=0.252688;AN=186;AO=785;CIGAR=1X;DP=3965;DPB=3965;DPRA=0.783607;EPP=1707.62;EPPR=6903.95;GTI=3;LEN=1;MEANALT=1;MQM=60;MQMR=59.9959;NS=93;NUMALT=1;ODDS=0.332589;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27949;QR=113153;RO=3178;RPL=0;RPP=1707.62;RPPR=6903.95;RPR=785;RUN=1;SAF=785;SAP=1707.62;SAR=0;SRF=3178;SRP=6903.95;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:14,5:14:474:5:180:-10.8325,0,-37.2601	0/1:21:11,10:11:351:10:360:-26.4227,0,-25.5748	0/1:46:20,26:20:697:26:932:-70.3515,0,-49.2033	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:53:30,23:30:1065:23:809:-57.1737,0,-80.2052	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/1:77:37,40:37:1332:40:1440:-106.718,0,-97.0031	0/1:37:10,27:10:360:27:957:-75.3058,0,-21.6062	0/1:34:19,15:19:665:15:521:-36.9813,0,-49.9378	0/1:73:38,35:38:1364:35:1260:-91.7303,0,-101.086	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:63:34,29:34:1220:29:1029:-73.9563,0,-91.1419	0/0:87:87,0:87:3105:0:0:0,-26.1896,-279.676	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:34:15,19:15:540:19:668:-50.2106,0,-38.7015	0/1:87:46,41:46:1637:41:1460:-105.506,0,-121.427	0/0:179:178,0:178:6365:0:0:0,-53.5833,-572.579	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605	0/1:45:29,16:29:1044:16:572:-38.2671,0,-80.7285	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:6:3,3:3:93:3:104:-7.89663,0,-6.87055	0/0:169:169,0:169:5997:0:0:0,-50.8741,-539.833	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.133	0/1:27:18,9:18:640:9:324:-21.378,0,-49.8015	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:47:30,17:30:1080:17:589:-39.1849,0,-83.3648	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:37:24,13:24:849:13:464:-30.9594,0,-65.5897	0/1:38:18,20:18:636:20:716:-53.3286,0,-46.1289	0/1:32:14,18:14:504:18:648:-49.0189,0,-36.0651	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:45:45,0:45:1582:0:0:0,-13.5463,-142.666	0/1:48:30,18:30:1076:18:618:-41.4888,0,-82.7034	0/0:45:44,0:44:1557:0:0:0,-13.2453,-140.06	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:52:31,21:31:1116:21:756:-52.7137,0,-85.0981	0/1:20:8,12:8:258:12:402:-30.4786,0,-17.5124	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:45:25,20:25:885:20:701:-49.8654,0,-66.4202	0/1:22:18,4:18:644:4:144:-6.69096,0,-51.6679	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:6:6,0:6:197:0:0:0,-1.80618,-18.0513	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.772	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:68:68,0:68:2387:0:0:0,-20.47,-215.084	0/0:78:78,0:78:2751:0:0:0,-23.4803,-247.829	0/1:31:19,12:19:665:12:432:-29.8893,0,-50.8409	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:64:19,45:19:657:45:1597:-124.752,0,-40.1845	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/1:39:21,18:21:737:18:644:-46.5504,0,-54.9105	0/1:21:10,11:10:341:11:381:-28.299,0,-24.6961	0/0:96:95,1:95:3358:1:36:0,-25.3006,-298.838	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/1:56:31,25:31:1112:25:888:-63.3813,0,-83.5337	0/1:55:25,30:25:900:30:1076:-80.5962,0,-64.7644	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:37:37,0:37:1287:0:0:0,-11.1381,-116.125	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/0:118:118,0:118:4195:0:0:0,-35.5215,-377.729	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:45:23,22:23:824:22:773:-56.3431,0,-60.937	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3825	0/1:84:42,42:42:1504:42:1504:-110.368,0,-110.368	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:55:55,0:55:1946:0:0:0,-16.5566,-175.412	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:61:30,31:30:1072:31:1112:-82.0285,0,-78.4296	0/1:47:21,26:21:756:26:936:-70.4111,0,-54.2188	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.909
chr07	25137694	.	C	G	92525.2	PASS	AB=0.524038;ABP=13.4501;AC=144;AF=0.765957;AN=188;AO=4723;CIGAR=1X;DP=5727;DPB=5727;DPRA=0;EPP=10258.9;EPPR=2159.28;GTI=6;LEN=1;MEANALT=1.10638;MQM=39.1821;MQMR=35.3384;NS=94;NUMALT=1;ODDS=0.612433;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165948;QR=35326;RO=993;RPL=0;RPP=10258.9;RPPR=2159.28;RPR=4723;RUN=1;SAF=0;SAP=10258.9;SAR=4723;SRF=0;SRP=2159.28;SRR=993;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:38,37:38:1359:37:1311:-90.8318,0,-83.7065	0/1:37:20,17:20:716:17:612:-42.4646,0,-43.6914	0/1:73:34,39:34:1215:39:1322:-93.2945,0,-69.7379	1/1:114:0,114:0:0:114:3979:-336.703,-34.3174,0	1/1:49:0,49:0:0:49:1705:-147.739,-14.7505,0	1/1:25:0,25:0:0:25:876:-76.189,-7.52575,0	0/1:53:18,35:18:648:35:1237:-89.8813,0,-38.5876	1/1:89:0,89:0:0:89:3113:-267.49,-26.7917,0	1/1:110:0,110:0:0:110:3862:-335.148,-33.1133,0	0/1:61:23,38:23:815:38:1356:-97.683,0,-50.2849	1/1:5:0,5:0:0:5:165:-14.5246,-1.50515,0	0/1:24:12,12:12:423:12:423:-29.9904,0,-26.2201	0/1:19:6,13:6:216:13:449:-33.794,0,-11.3295	0/1:8:5,3:5:180:3:108:-7.26433,0,-11.6342	0/1:15:12,3:12:428:3:108:-5.07063,0,-31.1174	1/1:17:0,17:0:0:17:595:-51.9197,-5.11751,0	1/1:8:0,8:0:0:8:288:-25.4091,-2.40824,0	1/1:8:0,8:0:0:8:288:-25.4091,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.4807,-0.30103,0	0/1:84:39,45:39:1400:45:1561:-109.244,0,-91.7523	1/1:109:0,109:0:0:109:3842:-330.141,-32.8123,0	1/1:120:0,120:0:0:120:4187:-357.396,-36.1236,0	1/1:124:1,122:1:27:122:4289:-360.837,-34.6721,0	1/1:71:2,69:2:72:69:2442:-204.357,-15.2054,0	0/1:49:26,23:26:936:23:813:-55.9205,0,-60.1764	0/1:243:115,126:115:4084:126:4462:-309.681,0,-272.695	1/1:168:0,168:0:0:168:5884:-507.309,-50.573,0	0/1:8:6,2:6:216:2:63:-3.41839,0,-15.4456	1/1:258:0,257:0:0:257:9039:-770.116,-77.3647,0	0/1:70:40,30:40:1419:30:1012:-65.7449,0,-94.5011	1/1:53:0,53:0:0:53:1885:-158.208,-15.9546,0	1/1:6:0,6:0:0:6:216:-18.9997,-1.80618,0	1/1:19:0,19:0:0:19:659:-55.8372,-5.71957,0	0/1:6:5,1:5:167:1:36:-1.67452,0,-11.9202	0/1:7:4,3:4:144:3:93:-6.34609,0,-9.45025	0/1:12:3,9:3:104:9:315:-22.846,0,-4.96824	1/1:38:0,38:0:0:38:1360:-115.285,-11.4391,0	1/1:160:1,159:1:36:159:5621:-480.29,-44.5914,0	1/1:5:0,5:0:0:5:161:-13.9771,-1.50515,0	0/1:2:1,1:1:36:1:36:-2.85243,0,-2.6441	0/1:51:19,32:19:676:32:1107:-80.354,0,-39.1328	1/1:7:0,7:0:0:7:239:-21.1085,-2.10721,0	0/1:122:62,60:62:2200:60:2100:-145.028,0,-140.46	0/1:13:9,4:9:320:4:144:-8.75394,0,-23.2832	0/1:16:8,8:8:284:8:288:-20.1758,0,-19.3682	1/1:126:1,125:1:36:125:4375:-369.394,-34.3406,0	1/1:55:0,55:0:0:55:1959:-169.236,-16.5567,0	0/1:181:73,107:73:2579:107:3802:-270.285,0,-160.796	1/1:77:0,77:0:0:77:2656:-229.144,-23.1793,0	1/1:64:0,64:0:0:64:2214:-188.728,-19.2659,0	1/1:127:0,127:0:0:127:4464:-381.01,-38.2308,0	0/1:6:1,5:1:36:5:180:-13.9424,0,-1.53997	0/1:91:41,50:41:1443:50:1762:-125.977,0,-83.1174	0/1:20:11,8:11:396:8:288:-18.9304,0,-27.3294	1/1:3:0,3:0:0:3:104:-9.43593,-0.90309,0	0/1:103:42,60:42:1493:60:2093:-150.553,0,-88.3541	0/1:40:12,28:12:420:28:987:-72.4056,0,-23.6177	1/1:8:0,8:0:0:8:264:-23.1459,-2.40824,0	1/1:30:0,30:0:0:30:1064:-91.2232,-9.0309,0	1/1:30:0,30:0:0:30:1051:-90.8405,-9.0309,0	1/1:34:0,34:0:0:34:1194:-102.93,-10.235,0	0/1:8:2,6:2:72:6:212:-16.1442,0,-3.11416	1/1:183:0,183:0:0:183:6474:-549.188,-55.0885,0	1/1:222:1,221:1:36:221:7807:-665.91,-63.4825,0	0/1:44:21,23:21:756:23:806:-56.7071,0,-47.5565	1/1:59:0,59:0:0:59:2066:-175.884,-17.7608,0	1/1:160:1,159:1:36:159:5557:-470.395,-44.8187,0	0/1:73:32,41:32:1140:41:1440:-100.368,0,-71.4344	0/1:5:2,3:2:72:3:108:-8.16742,0,-4.66255	1/1:61:0,61:0:0:61:2143:-187.254,-18.3628,0	0/1:30:16,14:16:555:14:504:-34.4488,0,-39.1089	0/1:16:8,8:8:280:8:284:-19.9279,0,-18.9827	1/1:99:0,99:0:0:99:3469:-300.859,-29.802,0	1/1:36:0,36:0:0:36:1229:-106.508,-10.8371,0	0/1:109:49,60:49:1747:60:2108:-147.64,0,-108.942	0/1:132:67,64:67:2385:64:2244:-151.859,0,-159.55	0/1:58:31,27:31:1103:27:956:-65.5957,0,-69.1134	1/1:57:0,56:0:0:56:1963:-168.235,-16.8577,0	1/1:42:0,42:0:0:42:1504:-130.201,-12.6433,0	1/1:70:1,69:1:32:69:2409:-204.496,-18.0484,0	1/1:81:1,80:1:36:80:2832:-242.662,-21.2598,0	1/1:274:0,273:0:0:273:9597:-817.603,-82.1812,0	1/1:34:0,34:0:0:34:1175:-99.8433,-10.235,0	0/1:17:12,5:12:432:5:171:-9.94094,0,-31.3555	0/1:11:7,4:7:248:4:144:-9.356,0,-17.8613	0/1:37:21,16:21:756:16:564:-37.6815,0,-52.0176	0/1:22:12,10:12:432:10:360:-25.0517,0,-26.3692	1/1:19:0,19:0:0:19:671:-58.1712,-5.71957,0	1/1:22:0,22:0:0:22:788:-68.9654,-6.62266,0	0/1:3:2,1:2:72:1:36:-2.5514,0,-5.26461	0/1:9:5,4:5:180:4:144:-10.0723,0,-11.7539	0/1:17:12,5:12:432:5:180:-10.6595,0,-29.7582	1/1:91:0,90:0:0:90:3183:-272.012,-27.0927,0	1/1:19:0,19:0:0:19:676:-58.3381,-5.71957,0
chr07	25137705	.	AG	CA,CG	114425	PASS	AB=0.527817,0.471716;ABP=17.3863,17.8736;AC=144,44;AF=0.765957,0.234043;AN=188;AO=4882,1015;CIGAR=2X,1X1M;DP=5903;DPB=5903;DPRA=0,0.808655;EPP=10604.1,2207.05;EPPR=0;GTI=6;LEN=2,1;MEANALT=1.58511,2.02041;MQM=39.1508,35.1921;MQMR=0;NS=94;NUMALT=2;ODDS=1.21983;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=170213,34641;QR=0;RO=0;RPL=0,0;RPP=10604.1,2207.05;RPPR=0;RPR=4882,1015;RUN=1,1;SAF=0,0;SAP=10604.1,2207.05;SAR=4882,1015;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:78:0,37,41:0:0:37,41:1304,1335:-199.256,-97.0849,-85.9468,-102.49,0,-90.1477	1/2:40:0,20,20:0:0:20,20:703,637:-101.045,-46.2683,-40.2477,-55.0899,0,-49.0693	1/2:77:0,41,36:0:0:41,36:1405,1131:-191.187,-81.6147,-69.2724,-109.878,0,-99.0408	1/1:116:0,116,0:0:0:116,0:4007,0:-340.368,-34.9195,0,-340.368,-34.9195,-340.368	1/1:49:0,49,0:0:0:49,0:1713,0:-148.331,-14.7505,0,-148.331,-14.7505,-148.331	1/1:26:0,26,0:0:0:26,0:924,0:-80.0945,-7.82678,0,-80.0945,-7.82678,-80.0945	1/2:55:0,37,18:0:0:37,18:1278,648:-147.039,-49.1236,-37.9855,-98.2473,0,-92.8288	1/1:93:0,93,0:0:0:93,0:3228,0:-277.524,-27.9958,0,-277.524,-27.9958,-277.524	1/1:116:0,116,0:0:0:116,0:4006,0:-348.005,-34.9195,0,-348.005,-34.9195,-348.005	1/2:66:0,40,26:0:0:40,26:1404,893:-175.614,-67.5762,-55.535,-108.364,0,-100.537	1/1:5:0,5,0:0:0:5,0:176,0:-15.4856,-1.50515,0,-15.4856,-1.50515,-15.4856	1/2:25:0,13,12:0:0:13,12:446,391:-63.8138,-28.7519,-24.8386,-35.3761,0,-31.7637	1/2:20:0,13,7:0:0:13,7:464,226:-53.176,-16.6299,-12.7165,-36.8573,0,-34.7501	1/2:9:0,3,6:0:0:3,6:101,189:-21.887,-13.9789,-13.0758,-8.22101,0,-6.41483	1/2:15:0,3,12:0:0:3,12:108,417:-39.9227,-31.5782,-30.6751,-8.68299,0,-5.07063	1/1:19:0,19,0:0:0:19,0:665,0:-57.9914,-5.71957,0,-57.9914,-5.71957,-57.9914	1/1:8:0,8,0:0:0:8,0:284,0:-25.106,-2.40824,0,-25.106,-2.40824,-25.106	1/1:8:0,8,0:0:0:8,0:274,0:-24.3474,-2.40824,0,-24.3474,-2.40824,-24.3474	1/1:1:0,1,0:0:0:1,0:36,0:-3.4807,-0.30103,0,-3.4807,-0.30103,-3.4807	1/2:85:0,46,39:0:0:46,39:1609,1395:-228.783,-105.646,-91.7987,-123.469,0,-111.729	1/1:110:0,110,0:0:0:110,0:3883,0:-333.579,-33.1133,0,-333.579,-33.1133,-333.579	1/1:126:0,126,0:0:0:126,0:4411,0:-375.814,-37.9298,0,-375.814,-37.9298,-375.814	1/1:131:0,130,0:0:0:130,0:4537,0:-385.039,-39.1339,0,-385.039,-39.1339,-385.039	1/1:74:0,72,2:0:0:72,2:2483,70:-214.185,-21.6742,0,-209.029,-16.198,-208.427	1/2:49:0,23,26:0:0:23,26:813,876:-128.309,-64.7184,-57.7947,-63.9165,0,-56.0898	1/2:250:0,133,116:0:0:133,116:4609,4060:-666.512,-311.747,-271.71,-354.754,0,-319.834	1/1:170:0,170,0:0:0:170,0:5894,0:-509.934,-51.1751,0,-509.934,-51.1751,-509.934	1/2:9:0,2,7:0:0:2,7:70,237:-23.2349,-17.7493,-17.1473,-5.81728,0,-3.71007	1/1:265:0,265,0:0:0:265,0:9234,0:-787.572,-79.773,0,-787.572,-79.773,-787.572	1/2:75:0,33,42:0:0:33,42:1100,1458:-191.674,-107.743,-97.8085,-84.2486,0,-71.6053	1/1:58:0,58,0:0:0:58,0:1951,0:-164.937,-17.4597,0,-164.937,-17.4597,-164.937	1/1:6:0,6,0:0:0:6,0:203,0:-17.9733,-1.80618,0,-17.9733,-1.80618,-17.9733	1/1:19:0,19,0:0:0:19,0:657,0:-55.4156,-5.71957,0,-55.4156,-5.71957,-55.4156	1/2:7:0,1,6:0:0:1,6:36,197:-17.4789,-14.6403,-14.3393,-3.17967,0,-1.37349	1/2:7:0,3,4:0:0:3,4:108,131:-18.3596,-9.84358,-8.94049,-8.84286,0,-7.63874	1/2:12:0,9,3:0:0:9,3:322,98:-31.4693,-7.445,-4.73573,-24.3303,0,-23.4272	1/1:43:0,43,0:0:0:43,0:1492,0:-126.589,-12.9443,0,-126.589,-12.9443,-126.589	1/1:162:0,162,0:0:0:162,0:5689,0:-490.176,-48.7669,0,-490.176,-48.7669,-490.176	1/1:6:0,6,0:0:0:6,0:184,0:-16.3551,-1.80618,0,-16.3551,-1.80618,-16.3551	1/2:2:0,1,1:0:0:1,1:36,35:-5.71879,-2.89801,-2.59698,-3.15346,0,-2.85243	1/2:53:0,34,19:0:0:34,19:1198,651:-140.976,-48.0375,-37.8025,-93.2603,0,-87.5408	1/1:7:0,7,0:0:0:7,0:236,0:-20.8896,-2.10721,0,-20.8896,-2.10721,-20.8896	1/2:124:0,61,63:0:0:61,63:2128,2125:-322.404,-156.813,-138.45,-165.913,0,-146.948	1/2:13:0,4,9:0:0:4,9:128,324:-34.647,-24.7291,-23.525,-10.2349,0,-7.52558	1/2:16:0,8,8:0:0:8,8:284,284:-43.7647,-21.7764,-19.3682,-22.3233,0,-19.915	1/1:128:0,127,0:0:0:127,0:4397,0:-375.703,-38.2308,0,-375.703,-38.2308,-375.703	1/1:61:0,61,0:0:0:61,0:2151,0:-184.876,-18.3628,0,-184.876,-18.3628,-184.876	1/2:181:0,109,72:0:0:109,72:3830,2542:-486.126,-191.664,-158.852,-294.793,0,-273.119	1/1:80:0,79,0:0:0:79,0:2781,0:-238.618,-23.7814,0,-238.618,-23.7814,-238.618	1/1:63:0,63,0:0:0:63,0:2206,0:-187.575,-18.9649,0,-187.575,-18.9649,-187.575	1/1:126:0,126,0:0:0:126,0:4393,0:-375.738,-37.9298,0,-375.738,-37.9298,-375.738	1/2:6:0,5,1:0:0:5,1:180,36:-16.9526,-3.04512,-1.53997,-14.2434,0,-13.9424	1/2:93:0,51,42:0:0:51,42:1809,1317:-237.263,-95.2244,-79.8719,-142.35,0,-129.706	1/2:19:0,9,10:0:0:9,10:322,351:-52.0397,-27.142,-24.4327,-25.2341,0,-22.2238	1/1:3:0,3,0:0:0:3,0:103,0:-9.35203,-0.90309,0,-9.35203,-0.90309,-9.35203	1/2:103:0,59,44:0:0:59,44:2053,1481:-268.951,-108.629,-90.8683,-160.641,0,-147.396	1/2:40:0,28,12:0:0:28,12:991,431:-108.626,-32.727,-24.2982,-76.2328,0,-72.6204	1/1:8:0,8,0:0:0:8,0:264,0:-23.1511,-2.40824,0,-23.1511,-2.40824,-23.1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chr07	25137712	.	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chr07	25152101	.	A	G	49808.6	PASS	AB=0.515039;ABP=14.1135;AC=46;AF=0.244681;AN=188;AO=2938;CIGAR=1X;DP=12059;DPB=12059;DPRA=1.128;EPP=6382.8;EPPR=19793.8;GTI=1;LEN=1;MEANALT=1.11111;MQM=59.8233;MQMR=59.9806;NS=94;NUMALT=1;ODDS=12.7311;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104824;QR=326795;RO=9114;RPL=0;RPP=6382.8;RPPR=19793.8;RPR=2938;RUN=1;SAF=2938;SAP=6382.8;SAR=0;SRF=9114;SRP=19793.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:23,24:23:820:24:864:-63.9342,0,-59.9741	0/1:230:104,125:104:3717:125:4454:-331.881,0,-265.583	0/1:169:83,86:83:2984:86:3084:-226.91,0,-217.917	0/0:273:273,0:273:9788:0:0:0,-82.1812,-880.864	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:173:98,75:98:3512:75:2653:-186.91,0,-264.212	0/0:141:141,0:141:5030:0:0:0,-42.4452,-452.842	0/0:62:62,0:62:2224:0:0:0,-18.6639,-199.996	0/1:130:67,63:67:2404:63:2249:-163.538,0,-177.483	0/0:124:124,0:124:4456:0:0:0,-37.3277,-401.209	0/1:84:43,41:43:1548:41:1453:-105.777,0,-114.327	0/1:76:39,37:39:1385:37:1316:-95.8613,0,-102.069	0/1:143:72,71:72:2584:71:2544:-186.162,0,-189.762	0/1:63:25,38:25:896:38:1368:-104.456,0,-61.9955	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/0:109:109,0:109:3901:0:0:0,-32.8123,-351.282	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.935	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:287:146,141:146:5248:141:5049:-367.759,0,-386.059	0/0:113:113,0:113:4030:0:0:0,-34.0164,-362.886	0/0:152:152,0:152:5464:0:0:0,-45.7566,-491.885	0/0:162:162,0:162:5797:0:0:0,-48.7669,-521.842	0/0:142:142,0:142:5089:0:0:0,-42.7463,-458.151	0/1:95:56,39:56:2012:39:1404:-98.0552,0,-152.755	0/1:362:174,188:174:6244:188:6706:-494.642,0,-453.071	0/0:155:155,0:155:5568:0:0:0,-46.6596,-501.241	0/1:34:21,13:21:744:13:468:-32.2246,0,-57.0493	0/0:330:329,1:329:11784:1:21:0,-97.2399,-1058.32	0/1:368:209,159:209:7470:159:5673:-399.541,0,-561.562	0/0:283:278,4:278:9969:4:144:0,-71.9367,-883.808	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	1/1:12:1,11:1:36:11:396:-32.3738,-0.0140851,0	0/1:29:11,18:11:388:18:636:-48.8382,0,-26.5275	0/1:30:11,19:11:396:19:680:-52.4983,0,-26.9518	0/0:189:189,0:189:6760:0:0:0,-56.8947,-608.474	0/0:285:285,0:285:10225:0:0:0,-85.7935,-920.172	0/1:115:51,64:51:1836:64:2296:-172.196,0,-130.902	0/1:10:1,9:1:36:9:324:-26.4502,0,-0.587975	0/1:174:73,101:73:2624:101:3590:-270.917,0,-184.028	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:158:78,79:78:2796:79:2810:-205.429,0,-204.258	0/1:76:46,30:46:1656:30:1080:-74.635,0,-126.45	0/1:51:25,26:25:900:26:932:-68.8463,0,-65.9685	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.134	0/1:213:75,137:75:2700:137:4863:-373.638,0,-179.065	0/0:138:138,0:138:4956:0:0:0,-41.5421,-446.188	0/0:203:203,0:203:7276:0:0:0,-61.1091,-654.264	0/0:202:202,0:202:7229:0:0:0,-60.8081,-650.662	0/1:28:7,21:7:252:21:756:-59.935,0,-14.6001	0/1:241:142,99:142:5100:99:3548:-246.977,0,-386.588	0/1:136:69,67:69:2476:67:2363:-171.984,0,-182.153	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:189:88,101:88:3164:101:3582:-265.125,0,-228.089	0/1:56:26,30:26:932:30:1076:-80.2952,0,-67.3412	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:124:124,0:124:4429:0:0:0,-37.3277,-398.781	0/0:207:207,0:207:7440:0:0:0,-62.3132,-669.641	0/1:29:5,24:5:180:24:830:-66.2791,0,-7.82219	0/0:183:183,0:183:6565:0:0:0,-55.0885,-590.928	0/0:243:239,3:239:8564:3:108:0,-63.1339,-760.663	0/1:112:40,72:40:1436:72:2565:-197.383,0,-95.8086	0/0:109:109,0:109:3901:0:0:0,-32.8123,-351.152	0/0:187:185,1:185:6625:1:32:0,-53.1321,-593.108	0/1:212:74,138:74:2656:138:4940:-380.866,0,-175.467	0/1:52:27,25:27:972:25:900:-65.6675,0,-72.1443	0/0:111:109,2:109:3908:2:72:0,-26.5776,-345.076	0/1:100:44,56:44:1580:56:2008:-150.655,0,-112.389	0/1:27:10,17:10:360:17:612:-47.2856,0,-24.6165	0/0:128:128,0:128:4593:0:0:0,-38.5318,-413.15	0/0:77:76,0:76:2736:0:0:0,-22.8783,-246.122	0/1:225:123,102:123:4424:102:3607:-257.067,0,-330.598	0/1:215:88,127:88:3164:127:4564:-346.2,0,-220.262	0/1:164:84,80:84:3012:80:2853:-207.633,0,-221.942	0/0:94:92,2:92:3308:2:72:0,-21.4601,-291.101	0/0:24:24,0:24:830:0:0:0,-7.22472,-75.0124	0/0:107:107,0:107:3810:0:0:0,-32.2102,-343.096	0/0:128:127,1:127:4537:1:36:0,-34.9336,-404.898	0/0:281:281,0:281:10096:0:0:0,-84.5894,-908.565	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/1:94:51,43:51:1836:43:1548:-111.316,0,-137.224	0/1:96:59,37:59:2120:37:1328:-90.9234,0,-162.17	0/1:128:63,65:63:2268:65:2328:-171.248,0,-165.85	0/1:45:19,26:19:684:26:936:-71.0131,0,-48.344	0/0:85:84,1:84:3020:1:36:0,-21.9893,-268.432	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:129:63,66:63:2249:66:2360:-173.77,0,-163.839	0/1:195:107,88:107:3840:88:3148:-224.789,0,-287.095	0/1:62:18,44:18:648:44:1523:-118.692,0,-39.988	0/0:154:153,1:153:5488:1:36:0,-42.7603,-490.447	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.87
chr07	25156746	.	G	A	67933	PASS	AB=0.505792;ABP=4.72084;AC=44;AF=0.234043;AN=188;AO=2981;CIGAR=1X;DP=12633;DPB=12633;DPRA=0.978858;EPP=6467.49;EPPR=20890.4;GTI=0;LEN=1;MEANALT=1.03636;MQM=59.9577;MQMR=59.9857;NS=94;NUMALT=1;ODDS=4.49223;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106165;QR=339845;RO=9647;RPL=1418;RPP=18.3257;RPPR=104.961;RPR=1563;RUN=1;SAF=1419;SAP=17.9061;SAR=1562;SRF=5165;SRP=108.014;SRR=4482;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:21,16:21:752:16:543:-38.0505,0,-56.8681	0/1:157:88,69:88:3134:69:2468:-175.112,0,-235.024	0/1:176:78,98:78:2754:98:3515:-263.577,0,-195.119	0/0:275:275,0:275:9742:0:0:0,-82.7832,-875.881	0/0:73:72,1:72:2524:1:36:0,-18.3769,-223.811	0/0:54:53,1:53:1883:1:36:0,-12.6573,-166.15	0/1:196:95,101:95:3361:101:3627:-267.632,0,-243.693	0/0:236:235,1:235:8381:1:36:0,-67.4448,-750.697	0/0:101:101,0:101:3542:0:0:0,-30.404,-318.989	0/1:128:68,60:68:2405:60:2147:-154.965,0,-178.174	0/0:174:174,0:174:6021:0:0:0,-52.3792,-542.006	0/1:181:81,100:81:2826:100:3564:-266.478,0,-200.091	0/1:194:84,110:84:2932:110:3921:-294.683,0,-205.715	0/1:170:86,84:86:2979:84:2937:-213.378,0,-217.166	0/1:167:90,77:90:3086:77:2748:-197.274,0,-227.697	0/0:136:136,0:136:4762:0:0:0,-40.9401,-428.743	0/0:152:152,0:152:5361:0:0:0,-45.7566,-482.627	0/0:171:170,1:170:6007:1:36:0,-47.8779,-537.144	0/0:153:152,1:152:5315:1:36:0,-42.4593,-474.892	0/1:197:92,105:92:3300:105:3759:-279.201,0,-237.916	0/0:149:148,0:148:5215:0:0:0,-44.5524,-469.13	0/0:65:64,0:64:2267:0:0:0,-19.2659,-203.933	0/0:65:64,1:64:2292:1:36:0,-15.9687,-202.943	0/0:91:91,0:91:3216:0:0:0,-27.3937,-289.66	0/1:80:47,33:47:1660:33:1184:-82.7859,0,-125.602	0/1:330:178,152:178:6278:152:5364:-383.552,0,-465.779	0/0:292:292,0:292:10299:0:0:0,-87.9008,-926.844	0/1:76:32,44:32:1144:44:1571:-118.803,0,-80.3912	0/0:280:280,0:280:9884:0:0:0,-84.2884,-889.445	0/1:71:28,43:28:982:43:1533:-116.889,0,-67.3185	0/0:114:113,1:113:3981:1:21:0,-32.2175,-356.382	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/0:421:421,0:421:14751:0:0:0,-126.734,-1327.36	0/0:126:126,0:126:4480:0:0:0,-37.9298,-403.369	0/1:153:78,75:78:2718:75:2648:-192.507,0,-198.786	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:149:79,70:79:2799:70:2492:-179.677,0,-207.295	0/0:96:95,0:95:3321:0:0:0,-28.5978,-298.748	0/1:123:60,63:60:2144:63:2264:-166.996,0,-156.201	0/1:215:101,114:101:3565:114:4042:-299.228,0,-256.339	0/1:162:79,83:79:2735:83:2945:-216.517,0,-197.626	0/0:80:80,0:80:2833:0:0:0,-24.0824,-255.208	0/0:138:138,0:138:4893:0:0:0,-41.5421,-440.523	0/1:157:76,81:76:2681:81:2899:-213.883,0,-194.274	0/0:130:130,0:130:4580:0:0:0,-39.1339,-412.366	0/0:172:172,0:172:6112:0:0:0,-51.7772,-550.181	0/0:153:153,0:153:5452:0:0:0,-46.0576,-490.809	0/1:7:5,2:5:176:2:63:-3.87594,0,-14.0778	0/1:134:75,59:75:2649:59:2124:-151.09,0,-198.318	0/1:42:23,19:23:820:19:684:-49.2471,0,-61.4793	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:161:76,85:76:2720:85:3016:-223.2,0,-196.578	0/1:55:29,26:29:1036:26:915:-66.1074,0,-76.9973	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:19:19,0:19:656:0:0:0,-5.71957,-59.3594	0/0:71:70,1:70:2452:1:36:0,-17.78,-217.338	0/0:197:194,2:194:6768:2:72:0,-52.525,-602.368	0/1:7:2,5:2:63:5:180:-14.4449,0,-3.87594	0/0:190:190,0:190:6716:0:0:0,-57.1957,-604.522	0/0:172:172,0:172:6092:0:0:0,-51.7772,-548.387	0/1:87:44,43:44:1568:43:1532:-111.983,0,-115.222	0/0:109:109,0:109:3863:0:0:0,-32.8123,-347.866	0/0:177:177,0:177:6206:0:0:0,-53.2823,-558.642	0/1:93:24,69:24:851:69:2453:-193.024,0,-48.8272	0/1:95:48,47:48:1672:47:1667:-121.719,0,-122.166	0/0:97:97,0:97:3447:0:0:0,-29.1999,-310.442	0/1:190:92,98:92:3216:98:3497:-257.744,0,-232.468	0/1:32:19,13:19:676:13:468:-32.8267,0,-51.535	0/0:82:82,0:82:2891:0:0:0,-24.6845,-260.426	0/0:118:118,0:118:4205:0:0:0,-35.5215,-378.631	0/1:236:134,102:134:4678:102:3625:-255.41,0,-350.142	0/1:156:88,68:88:3128:68:2424:-171.454,0,-234.785	0/1:102:49,53:49:1741:53:1902:-140.753,0,-126.267	0/0:149:149,0:149:5287:0:0:0,-44.8535,-475.965	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:135:135,0:135:4792:0:0:0,-40.639,-431.436	0/0:164:164,0:164:5741:0:0:0,-49.3689,-516.809	0/0:226:226,0:226:8026:0:0:0,-68.0328,-722.363	0/0:224:223,1:223:7824:1:36:0,-63.8324,-700.6	0/1:135:73,62:73:2565:62:2213:-158.794,0,-190.459	0/1:230:119,111:119:4198:111:3941:-285.646,0,-308.767	0/1:362:178,184:178:6206:184:6579:-483.216,0,-449.671	0/1:99:50,49:50:1761:49:1745:-127.531,0,-128.97	0/0:158:158,0:158:5461:0:0:0,-47.5627,-491.625	0/0:151:151,0:151:5290:0:0:0,-45.4555,-476.243	0/1:134:56,78:56:1957:78:2769:-209.113,0,-136.066	0/1:193:98,94:98:3435:94:3363:-244.768,0,-251.246	0/1:179:66,113:66:2309:113:4021:-308.191,0,-154.184	0/0:98:97,1:97:3467:1:36:0,-25.9027,-308.643	0/0:268:268,0:268:9311:0:0:0,-80.676,-837.977
chr07	25158569	.	T	G	31621.4	PASS	AB=0.533181;ABP=36.5868;AC=45;AF=0.239362;AN=188;AO=1888;CIGAR=1X;DP=8055;DPB=8055;DPRA=0.916667;EPP=4102.75;EPPR=13388;GTI=1;LEN=1;MEANALT=1;MQM=59.7145;MQMR=59.3879;NS=94;NUMALT=1;ODDS=1.10388;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66718;QR=220970;RO=6164;RPL=0;RPP=4102.75;RPPR=13388;RPR=1888;RUN=1;SAF=0;SAP=4102.75;SAR=1888;SRF=0;SRP=13388;SRR=6164;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:16,42:16:572:42:1463:-114.464,0,-34.3537	0/1:134:65,69:65:2336:69:2463:-181.569,0,-170.108	0/1:195:79,116:79:2840:116:4125:-312.723,0,-197.065	0/0:202:202,0:202:7235:0:0:0,-60.8081,-650.898	0/0:66:65,1:65:2336:1:32:0,-16.6687,-207.234	0/0:53:53,0:53:1863:0:0:0,-15.9546,-167.912	0/1:124:74,50:74:2641:50:1784:-123.513,0,-200.006	0/0:148:148,0:148:5303:0:0:0,-44.5524,-476.23	0/0:72:71,1:71:2539:1:36:0,-18.0759,-225.154	0/1:98:51,47:51:1827:47:1673:-121.332,0,-135.182	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.507	0/1:71:34,37:34:1215:37:1302:-95.6141,0,-88.2581	0/1:42:19,23:19:684:23:801:-59.7634,0,-49.2471	0/1:50:28,22:28:1000:22:792:-56.5496,0,-75.2523	0/1:69:22,47:22:792:47:1651:-128.096,0,-50.8323	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.558	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.074	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.847	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.808	0/1:152:67,85:67:2404:85:3013:-225.636,0,-170.605	0/0:131:131,0:131:4700:0:0:0,-39.4349,-422.497	0/0:112:111,0:111:3992:0:0:0,-33.4143,-358.915	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.26	0/0:127:123,4:123:4420:4:144:0,-24.9172,-384.531	0/1:60:23,37:23:828:37:1328:-101.756,0,-56.7741	0/1:243:98,145:98:3524:145:5099:-385.895,0,-244.145	0/0:149:149,0:149:5329:0:0:0,-44.8535,-479.407	0/1:30:15,15:15:536:15:516:-37.7325,0,-39.5225	0/0:341:340,0:340:12207:0:0:0,-102.35,-1097.91	0/1:125:69,56:69:2484:56:1999:-142.546,0,-185.917	0/0:127:127,0:127:4547:0:0:0,-38.2308,-408.627	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.899	1/1:6:0,6:0:0:6:207:-18.9658,-1.80618,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:174:174,0:174:6232:0:0:0,-52.3792,-560.802	0/0:235:235,0:235:8444:0:0:0,-70.742,-759.526	0/1:55:34,21:34:1224:21:735:-49.9066,0,-93.9022	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:102:54,48:54:1940:48:1694:-122.04,0,-144.15	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:127:51,76:51:1820:76:2680:-203.214,0,-125.839	0/1:48:20,28:20:720:28:966:-72.7927,0,-50.6656	0/1:49:29,20:29:1040:20:694:-48.0299,0,-79.136	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.33	0/0:131:131,0:131:4684:0:0:0,-39.4349,-421.675	0/1:155:74,81:74:2644:81:2892:-213.844,0,-191.302	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.171	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.193	0/0:118:118,0:118:4244:0:0:0,-35.5215,-381.96	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:125:61,64:61:2192:64:2271:-167.001,0,-159.899	0/1:24:12,12:12:432:12:432:-31.9956,0,-31.9965	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.852	0/1:137:56,81:56:1997:81:2858:-216.204,0,-138.683	0/1:33:11,22:11:396:22:783:-60.8258,0,-25.9419	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.521	0/0:70:70,0:70:2485:0:0:0,-21.0721,-223.855	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.712	0/1:4:3,1:3:108:1:36:-2.29858,0,-8.87105	0/0:176:176,0:176:6336:0:0:0,-52.9813,-570.203	0/0:156:152,4:152:5438:4:144:0,-33.6495,-475.819	0/1:93:42,51:42:1508:51:1785:-132.927,0,-108.019	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.811	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.58	0/1:81:17,64:17:608:64:2276:-180.676,0,-30.6686	0/1:14:8,6:8:288:6:197:-13.8369,0,-22.0422	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.228	0/1:77:50,27:50:1796:27:928:-60.6499,0,-138.616	0/1:15:7,8:7:252:8:288:-21.7496,0,-18.4996	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.55	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.174	0/1:167:60,107:60:2156:107:3762:-288.243,0,-143.332	0/1:131:71,60:71:2548:60:2135:-152.981,0,-190.118	0/1:153:82,71:82:2940:71:2468:-176.279,0,-218.741	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.693	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:124:123,0:123:4401:0:0:0,-37.0267,-395.731	0/0:74:74,0:74:2664:0:0:0,-22.2762,-239.956	0/0:146:146,0:146:5239:0:0:0,-43.9504,-471.218	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.908	0/1:48:23,25:23:820:25:888:-65.7896,0,-59.6143	0/1:77:46,31:46:1636:31:1100:-76.1263,0,-124.307	0/1:122:64,58:64:2300:58:2068:-149.662,0,-170.11	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.1903	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.357	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.285	0/1:22:12,10:12:432:10:339:-24.2148,0,-32.5985	0/1:92:48,44:48:1724:44:1547:-111.82,0,-127.628	0/1:51:16,35:16:568:35:1244:-96.9098,0,-36.0993	0/0:102:102,0:102:3648:0:0:0,-30.7051,-328.31	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.059
chr07	25158573	.	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chr07	25208394	.	G	T	180778	PASS	AB=0.512609;ABP=8.70541;AC=142;AF=0.755319;AN=188;AO=7198;CIGAR=1X;DP=9219;DPB=9219;DPRA=99.1183;EPP=7069.98;EPPR=2857.05;GTI=4;LEN=1;MEANALT=1.02151;MQM=59.9711;MQMR=59.9802;NS=94;NUMALT=1;ODDS=0.882271;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256408;QR=71943;RO=2019;RPL=6009;RPP=7011.7;RPPR=2857.05;RPR=1189;RUN=1;SAF=7188;SAP=15546.5;SAR=10;SRF=2019;SRP=4387.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:118:70,48:70:2496:48:1708:-118.484,0,-189.372	0/1:110:51,59:51:1806:59:2120:-157.955,0,-129.704	1/1:169:0,169:0:0:169:6042:-543.883,-50.8741,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:93:45,48:45:1612:48:1720:-127.09,0,-117.374	1/1:188:0,188:0:0:188:6700:-603.078,-56.5936,0	1/1:87:0,87:0:0:87:3094:-278.688,-26.1896,0	0/1:79:44,35:44:1580:35:1250:-89.023,0,-118.71	1/1:142:0,142:0:0:142:5000:-450.149,-42.7463,0	0/1:114:49,65:49:1739:65:2301:-173.033,0,-122.476	0/1:95:46,49:46:1628:49:1760:-130.086,0,-118.208	0/1:193:72,121:72:2584:121:4311:-329.958,0,-174.71	0/1:112:46,66:46:1652:66:2363:-179.212,0,-115.253	1/1:69:0,69:0:0:69:2415:-217.603,-20.7711,0	1/1:141:0,141:0:0:141:5023:-452.208,-42.4452,0	1/1:89:0,89:0:0:89:3167:-285.254,-26.7917,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	0/1:159:83,76:83:2945:76:2724:-197.539,0,-217.42	1/1:105:0,105:0:0:105:3705:-333.651,-31.6082,0	1/1:62:0,62:0:0:62:2212:-199.34,-18.6639,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:50:0,50:0:0:50:1787:-161.112,-15.0515,0	0/1:46:28,18:28:995:18:640:-44.0819,0,-76.0166	0/1:216:99,117:99:3529:117:4168:-310.279,0,-252.796	1/1:215:0,215:0:0:215:7669:-690.247,-64.7215,0	0/1:52:26,26:26:932:26:913:-66.8304,0,-68.5453	1/1:387:2,385:2:72:385:13761:-1231.43,-109.662,0	0/1:108:33,75:33:1180:75:2687:-209.564,0,-73.9968	1/1:92:0,92:0:0:92:3280:-295.419,-27.6948,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:1,4:1:36:4:129:-10.4225,0,-2.09312	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:237:0,237:0:0:237:8444:-759.964,-71.3441,0	1/1:181:0,181:0:0:181:6406:-576.613,-54.4864,0	0/1:81:39,42:39:1377:42:1487:-109.74,0,-99.8432	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:121:59,62:59:2112:62:2190:-160.939,0,-153.924	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:91:50,41:50:1792:41:1472:-105.381,0,-134.169	0/1:139:65,74:65:2327:74:2625:-194.653,0,-167.846	0/1:103:55,48:55:1879:48:1700:-122.278,0,-138.373	1/1:45:1,44:1:32:44:1584:-139.652,-10.347,0	1/1:103:0,103:0:0:103:3665:-330.052,-31.0061,0	0/1:129:55,74:55:1932:74:2656:-200.453,0,-135.321	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	1/1:180:1,179:1:36:179:6399:-572.401,-50.5871,0	1/1:60:0,60:0:0:60:2130:-191.966,-18.0618,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:94:51,43:51:1813:43:1539:-110.506,0,-135.153	0/1:68:30,37:30:1072:37:1324:-98.9333,0,-76.2637	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:135:69,66:69:2454:66:2358:-171.832,0,-180.438	0/1:30:11,19:11:388:19:684:-52.8594,0,-26.2265	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:90:0,90:0:0:90:3210:-289.12,-27.0927,0	1/1:232:2,230:2:72:230:8185:-729.828,-63.0022,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:171:0,171:0:0:171:6082:-547.483,-51.4761,0	1/1:123:2,121:2:72:121:4328:-382.859,-30.19,0	0/1:55:22,33:22:776:33:1171:-89.14,0,-53.6055	1/1:102:0,102:0:0:102:3654:-329.064,-30.7051,0	1/1:167:2,165:2:72:165:5890:-523.372,-43.4353,0	0/1:70:53,17:53:1892:17:599:-33.166,0,-149.486	0/1:58:22,36:22:792:36:1272:-97.3204,0,-54.1459	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:129:59,70:59:2095:70:2507:-187.049,0,-149.985	0/1:17:6,11:6:216:11:392:-30.5025,0,-14.673	1/1:79:0,79:0:0:79:2803:-252.481,-23.7814,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:92:45,47:45:1608:47:1671:-122.974,0,-117.315	0/1:149:86,63:86:3092:63:2255:-158.359,0,-233.653	0/1:156:73,83:73:2608:83:2948:-218.592,0,-188.008	1/1:93:0,93:0:0:93:3296:-296.859,-27.9958,0	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	1/1:120:0,120:0:0:120:4250:-382.679,-36.1236,0	1/1:107:0,107:0:0:107:3794:-341.658,-32.2102,0	1/1:174:0,174:0:0:174:6227:-560.524,-52.3792,0	1/1:116:0,116:0:0:116:4125:-371.436,-34.9195,0	0/1:135:77,57:77:2768:57:2035:-142.713,0,-208.663	0/1:110:54,56:54:1932:56:1994:-146.619,0,-141.043	0/1:205:110,95:110:3892:95:3390:-243.604,0,-288.765	0/1:62:29,33:29:1035:33:1169:-86.8523,0,-74.7992	1/1:91:0,91:0:0:91:3191:-287.411,-27.3937,0	1/1:93:0,93:0:0:93:3327:-299.634,-27.9958,0	0/1:103:56,47:56:2016:47:1679:-120.391,0,-150.707	0/1:158:52,106:52:1864:106:3736:-288.876,0,-120.477	0/1:97:69,28:69:2461:28:977:-59.0401,0,-192.543	1/1:145:0,145:0:0:145:5171:-465.532,-43.6494,0	1/1:153:0,153:0:0:153:5479:-493.236,-46.0576,0
chr07	25208399	.	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chr07	25208427	.	C	A	73843.7	PASS	AB=0.473259;ABP=46.0957;AC=47;AF=0.25;AN=188;AO=3310;CIGAR=1X;DP=15650;DPB=15650;DPRA=1.12602;EPP=7190.58;EPPR=26707.8;GTI=5;LEN=1;MEANALT=1;MQM=56.0211;MQMR=56.7605;NS=94;NUMALT=1;ODDS=3.01516;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118042;QR=440563;RO=12338;RPL=1633;RPP=4.28038;RPPR=262.397;RPR=1677;RUN=1;SAF=1633;SAP=4.28038;SAR=1677;SRF=5552;SRP=271.013;SRR=6786;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:7,18:7:244:18:644:-50.4341,0,-14.6995	0/1:120:64,56:64:2288:56:1967:-140.741,0,-169.221	0/1:105:69,36:69:2460:36:1280:-83.6095,0,-188.869	0/0:363:363,0:363:12984:0:0:0,-109.274,-1167.18	0/0:134:133,0:133:4755:0:0:0,-40.037,-427.19	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.355	0/1:188:100,88:100:3584:88:3148:-226.514,0,-266.043	0/0:142:142,0:142:5083:0:0:0,-42.7463,-454.763	0/0:131:130,1:130:4655:1:36:0,-35.8457,-413.871	0/1:187:114,73:114:4058:73:2610:-178.472,0,-308.774	0/0:199:199,0:199:7080:0:0:0,-59.905,-636.562	0/1:68:32,36:32:1144:36:1283:-94.7833,0,-82.382	0/1:83:43,40:43:1539:40:1420:-102.003,0,-112.927	0/1:275:161,114:161:5739:114:4073:-283.785,0,-433.506	0/1:212:112,100:112:4011:100:3560:-255.032,0,-297.24	0/0:137:137,0:137:4912:0:0:0,-41.2411,-440.72	0/0:69:69,0:69:2468:0:0:0,-20.7711,-221.248	0/0:97:97,0:97:3452:0:0:0,-29.1999,-309.666	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.07	0/1:314:165,149:165:5899:149:5350:-386.19,0,-436.235	0/0:266:266,0:266:9511:0:0:0,-80.074,-854.521	0/0:150:150,0:150:5376:0:0:0,-45.1545,-483.769	0/0:172:172,0:172:6161:0:0:0,-51.7772,-553.504	0/0:169:169,0:169:6056:0:0:0,-50.8741,-544.365	0/1:136:60,76:60:2156:76:2712:-202.996,0,-153.099	0/1:549:308,241:308:11027:241:8610:-607.171,0,-826.44	0/0:398:397,0:397:14159:0:0:0,-119.509,-1271.47	0/1:93:42,51:42:1504:51:1836:-137.258,0,-107.586	0/0:577:575,2:575:20515:2:72:0,-166.858,-1838.06	0/1:203:128,75:128:4592:75:2665:-178.639,0,-351.6	0/0:191:191,0:191:6782:0:0:0,-57.4967,-609.824	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0243	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3469	0/1:2:1,1:1:36:1:32:-2.59362,0,-2.78554	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	0/1:8:4,4:4:140:4:140:-10.5022,0,-10.5079	0/0:478:478,0:478:17047:0:0:0,-143.892,-1532.37	0/0:262:262,0:262:9392:0:0:0,-78.8699,-844.5	0/1:90:46,44:46:1656:44:1560:-112.866,0,-121.651	1/1:2:0,2:0:0:2:72:-6.83188,-0.60206,0	0/1:223:126,97:126:4496:97:3455:-243.683,0,-336.515	0/0:90:90,0:90:3232:0:0:0,-27.0927,-290.353	0/1:154:90,64:90:3220:64:2276:-158.497,0,-243.234	0/1:229:115,114:115:4090:114:4060:-295.868,0,-299.175	0/1:194:85,109:85:2992:109:3901:-291.765,0,-211.011	0/0:153:152,1:152:5448:1:31:0,-42.9581,-487.142	0/0:124:124,0:124:4420:0:0:0,-37.3277,-396.242	0/1:258:150,108:150:5339:108:3863:-269.482,0,-402.5	0/0:182:182,0:182:6501:0:0:0,-54.7875,-584.835	0/0:272:271,1:271:9662:1:36:0,-78.2819,-865.699	0/0:102:102,0:102:3629:0:0:0,-30.7051,-326.722	0/1:14:9,5:9:311:5:180:-12.3313,0,-24.0975	0/1:90:54,36:54:1935:36:1277:-87.7837,0,-146.892	0/1:105:62,43:62:2204:43:1527:-105.826,0,-166.988	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.7595	0/1:261:142,119:142:5052:119:4248:-303.077,0,-374.921	0/1:81:47,34:47:1680:34:1212:-84.7031,0,-126.766	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2647	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6482	0/0:156:151,5:151:5380:5:180:0,-30.431,-466.417	0/0:340:338,2:338:12058:2:72:0,-95.5135,-1077.06	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1217	0/0:340:340,0:340:12119:0:0:0,-102.35,-1089.86	0/0:333:329,4:329:11769:4:144:0,-86.9404,-1044.41	0/1:106:63,43:63:2248:43:1532:-106.048,0,-170.36	0/0:175:175,0:175:6243:0:0:0,-52.6802,-561.73	0/0:293:289,4:289:10316:4:144:0,-74.9008,-914.443	0/1:159:47,112:47:1683:112:3977:-309.92,0,-103.765	0/1:85:51,34:51:1816:34:1216:-83.9823,0,-138.075	0/0:79:79,0:79:2832:0:0:0,-23.7814,-254.186	0/1:240:136,104:136:4859:104:3721:-262.196,0,-365.084	0/1:32:21,11:21:752:11:396:-26.3141,0,-58.343	0/0:122:122,0:122:4364:0:0:0,-36.7257,-390.834	0/0:85:85,0:85:3044:0:0:0,-25.5875,-272.323	0/1:267:140,127:140:4985:127:4497:-323.239,0,-367.278	0/1:255:120,135:120:4299:135:4832:-357.836,0,-310.093	0/1:126:76,50:76:2688:50:1770:-120.763,0,-203.636	0/0:89:89,0:89:3184:0:0:0,-26.7917,-284.616	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.5445	0/0:202:202,0:202:7215:0:0:0,-60.8081,-648.624	0/0:65:65,0:65:2324:0:0:0,-19.5669,-208.466	0/0:410:410,0:410:14640:0:0:0,-123.422,-1313.65	0/0:242:241,1:241:8601:1:36:0,-69.2578,-768.88	0/1:214:101,113:101:3607:113:4043:-299.425,0,-260.288	0/1:203:95,108:95:3378:108:3856:-285.668,0,-242.993	0/1:376:176,200:176:6291:200:7165:-530.722,0,-452.707	0/1:70:47,23:47:1679:23:797:-50.0417,0,-129.698	0/0:89:89,0:89:3165:0:0:0,-26.7917,-283.247	0/0:83:83,0:83:2976:0:0:0,-24.9855,-266.36	0/1:131:59,72:59:2111:72:2584:-193.051,0,-150.557	0/1:232:129,103:129:4592:103:3664:-259.826,0,-343.258	0/1:164:48,116:48:1701:116:4100:-319.55,0,-103.821	0/0:259:259,0:259:9224:0:0:0,-77.9668,-829.55	0/0:303:303,0:303:10833:0:0:0,-91.2121,-973.927
chr07	25208477	.	A	G	145860	PASS	AB=0.534516;ABP=40.9349;AC=142;AF=0.755319;AN=188;AO=6811;CIGAR=1X;DP=8536;DPB=8536;DPRA=37.0913;EPP=14792.9;EPPR=3733.6;GTI=4;LEN=1;MEANALT=1.06522;MQM=54.0928;MQMR=52.1863;NS=94;NUMALT=1;ODDS=2.41235;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244310;QR=61566;RO=1718;RPL=6811;RPP=14792.9;RPPR=3733.6;RPR=0;RUN=1;SAF=0;SAP=14792.9;SAR=6811;SRF=0;SRP=3733.6;SRR=1718;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:19,6:19:684:6:216:-11.9782,0,-53.798	0/1:123:58,65:58:2088:65:2332:-172.156,0,-150.656	0/1:106:39,67:39:1404:67:2388:-181.991,0,-94.2099	1/1:194:0,192:0:0:192:6866:-616.47,-57.7978,0	1/1:92:0,92:0:0:92:3304:-296.815,-27.6948,0	1/1:61:0,61:0:0:61:2176:-195.603,-18.3628,0	0/1:94:46,48:46:1648:48:1709:-125.671,0,-119.864	1/1:144:0,144:0:0:144:5176:-463.085,-43.3483,0	1/1:132:1,130:1:36:130:4672:-415.13,-36.2046,0	0/1:111:30,81:30:1076:81:2904:-227.791,0,-63.1881	1/1:52:0,52:0:0:52:1868:-167.615,-15.6536,0	0/1:68:36,32:36:1292:32:1148:-82.6393,0,-95.6035	0/1:85:41,44:41:1461:44:1576:-115.649,0,-105.335	0/1:81:38,43:38:1353:43:1548:-114.875,0,-97.2641	0/1:97:50,47:50:1800:47:1692:-123.242,0,-131.304	1/1:67:0,67:0:0:67:2404:-214.783,-20.169,0	1/1:70:0,70:0:0:70:2512:-225.181,-21.0721,0	1/1:97:0,97:0:0:97:3484:-312.524,-29.1999,0	1/1:43:0,43:0:0:43:1548:-138.832,-12.9443,0	0/1:158:69,89:69:2480:89:3196:-239.981,0,-174.4	1/1:162:0,162:0:0:162:5792:-520.072,-48.7669,0	1/1:88:0,88:0:0:88:3164:-284.779,-26.4906,0	1/1:111:0,111:0:0:111:3969:-356.322,-33.4143,0	1/1:117:0,117:0:0:117:4200:-377.243,-35.2205,0	0/1:91:49,42:49:1745:42:1506:-108.188,0,-129.54	0/1:339:149,190:149:5328:190:6820:-511.244,0,-374.616	1/1:180:0,180:0:0:180:6452:-578.786,-54.1854,0	0/1:39:24,15:24:864:15:540:-37.1234,0,-66.0748	1/1:178:0,178:0:0:178:6392:-574.108,-53.5833,0	0/1:99:45,54:45:1605:54:1932:-143.633,0,-114.282	1/1:100:0,100:0:0:100:3584:-322.122,-30.103,0	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:8:0,8:0:0:8:288:-26.2302,-2.40824,0	0/1:2:1,1:1:36:1:36:-2.78554,0,-2.98717	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2801	0/1:9:5,4:5:172:4:140:-10.2068,0,-13.0781	1/1:241:0,241:0:0:241:8648:-776.619,-72.5482,0	1/1:82:0,82:0:0:82:2944:-264.641,-24.6845,0	0/1:92:43,49:43:1531:49:1760:-130.175,0,-109.669	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/1:99:36,63:36:1292:63:2260:-172.606,0,-86.3562	1/1:43:0,43:0:0:43:1548:-138.856,-12.9443,0	0/1:66:14,52:14:504:52:1868:-148.099,0,-25.5788	0/1:85:47,38:47:1692:38:1364:-97.2902,0,-126.173	0/1:96:56,40:56:2012:40:1440:-100.893,0,-151.306	1/1:107:0,107:0:0:107:3840:-345.588,-32.2102,0	1/1:124:0,124:0:0:124:4425:-395.79,-37.3277,0	0/1:125:54,71:54:1936:71:2552:-191.763,0,-135.292	1/1:101:0,101:0:0:101:3616:-325.317,-30.404,0	1/1:92:0,92:0:0:92:3304:-297.334,-27.6948,0	1/1:43:0,42:0:0:42:1508:-135.562,-12.6433,0	0/1:6:1,5:1:32:5:180:-14.7339,0,-1.39039	0/1:89:35,54:35:1241:54:1940:-147.609,0,-84.8898	0/1:35:11,24:11:392:24:860:-67.1616,0,-24.7938	1/1:12:0,12:0:0:12:428:-38.7595,-3.61236,0	0/1:129:49,80:49:1760:80:2863:-217.679,0,-118.365	0/1:51:22,28:22:792:28:1004:-75.0206,0,-55.9029	1/1:4:0,4:0:0:4:144:-13.3108,-1.20412,0	1/1:14:0,14:0:0:14:496:-44.9532,-4.21442,0	1/1:65:4,61:4:144:61:2177:-182.004,-6.27586,0	1/1:104:0,104:0:0:104:3736:-335.261,-31.3071,0	1/1:5:0,5:0:0:5:180:-16.5401,-1.50515,0	1/1:176:0,176:0:0:176:6309:-567.055,-52.9813,0	1/1:205:2,203:2:72:203:7292:-648.201,-54.8858,0	0/1:50:23,27:23:824:27:968:-72.0712,0,-59.0822	1/1:73:0,73:0:0:73:2614:-235.282,-21.9752,0	1/1:125:2,123:2:72:123:4394:-388.152,-30.805,0	0/1:91:60,31:60:2156:31:1112:-72.8709,0,-166.544	0/1:24:11,13:11:392:13:468:-35.1711,0,-28.2174	1/1:79:0,79:0:0:79:2844:-255.25,-23.7814,0	0/1:110:45,65:45:1605:65:2332:-176.894,0,-110.971	0/1:18:6,12:6:216:12:422:-32.8567,0,-14.3314	1/1:126:0,126:0:0:126:4520:-404.953,-37.9298,0	1/1:86:0,86:0:0:86:3096:-276.972,-25.8886,0	0/1:177:86,91:86:3088:91:3268:-239.788,0,-223.151	0/1:101:47,54:47:1688:54:1944:-144.594,0,-121.348	0/1:126:50,75:50:1777:75:2696:-204.092,0,-121.497	1/1:88:0,88:0:0:88:3168:-283.783,-26.4906,0	1/1:13:0,13:0:0:13:468:-42.3529,-3.91339,0	1/1:86:0,86:0:0:86:3088:-277.361,-25.8886,0	1/1:64:0,64:0:0:64:2285:-204.203,-19.2659,0	1/1:240:0,240:0:0:240:8583:-768.985,-72.2472,0	1/1:123:1,122:1:36:122:4388:-389.209,-33.4353,0	0/1:73:32,41:32:1152:41:1476:-111.035,0,-81.7725	0/1:90:52,38:52:1864:38:1368:-96.1852,0,-140.463	0/1:169:91,78:91:3268:78:2800:-200.961,0,-242.462	0/1:71:23,48:23:828:48:1728:-133.783,0,-52.5114	1/1:91:0,91:0:0:91:3264:-291.991,-27.3937,0	1/1:86:0,86:0:0:86:3088:-275.632,-25.8886,0	0/1:25:14,11:14:500:11:392:-27.9505,0,-37.4968	0/1:73:48,25:48:1728:25:896:-58.6192,0,-133.505	0/1:66:48,18:48:1720:18:644:-38.2356,0,-134.93	1/1:122:0,122:0:0:122:4388:-394.497,-36.7257,0	1/1:149:0,149:0:0:149:5352:-480.899,-44.8535,0
chr07	25212979	.	G	A	100960	PASS	AB=0.497904;ABP=3.09222;AC=145;AF=0.771277;AN=188;AO=3933;CIGAR=1X;DP=5021;DPB=5021;DPRA=0;EPP=3201.78;EPPR=1236.03;GTI=1;LEN=1;MEANALT=1;MQM=59.9954;MQMR=60;NS=94;NUMALT=1;ODDS=3.97512;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140963;QR=38985;RO=1088;RPL=3170;RPP=3201.78;RPPR=1236.03;RPR=763;RUN=1;SAF=3933;SAP=8543.41;SAR=0;SRF=1088;SRP=2365.57;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:11,6:11:377:6:216:-14.673,0,-29.1404	0/1:30:17,13:17:612:13:468:-33.3723,0,-46.3825	0/1:79:29,50:29:1044:50:1770:-135.798,0,-70.4934	1/1:145:0,145:0:0:145:5171:-465.529,-43.6494,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:29:0,29:0:0:29:1039:-93.8241,-8.72987,0	0/1:55:28,27:28:1008:27:972:-71.2413,0,-74.4797	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:58:1,57:1:36:57:2038:-180.093,-13.8615,0	0/1:60:22,38:22:775:38:1357:-104.368,0,-52.0094	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:65:28,37:28:1000:37:1326:-100.075,0,-70.7484	0/1:54:26,28:26:928:28:1004:-74.4202,0,-67.5826	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:61:30,31:30:1080:31:1116:-82.3889,0,-79.1504	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:99:45,54:45:1616:54:1929:-144.083,0,-115.928	1/1:140:0,140:0:0:140:5028:-452.663,-42.1442,0	1/1:67:0,67:0:0:67:2402:-216.436,-20.169,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:22:13,9:13:468:9:320:-22.5197,0,-35.837	0/1:130:79,51:79:2840:51:1832:-126.027,0,-216.704	1/1:147:0,147:0:0:147:5284:-475.693,-44.2514,0	0/1:34:20,14:20:705:14:504:-35.4631,0,-53.5378	1/1:162:0,162:0:0:162:5781:-520.403,-48.7669,0	0/1:85:30,55:30:1076:55:1980:-152.887,0,-71.5653	1/1:66:1,65:1:36:65:2324:-205.822,-16.2697,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:119:0,119:0:0:119:4284:-385.735,-35.8226,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:33:19,14:19:684:14:500:-35.4022,0,-51.9563	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:61:27,34:27:972:34:1224:-92.1042,0,-69.4351	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:55:29,26:29:1044:26:932:-67.6422,0,-77.7182	0/1:52:34,18:34:1209:18:648:-42.9983,0,-93.4606	0/1:49:34,15:34:1211:15:535:-33.7338,0,-94.545	1/1:74:0,74:0:0:74:2658:-239.466,-22.2762,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:91:39,52:39:1400:52:1864:-140.646,0,-98.9055	1/1:71:0,71:0:0:71:2556:-230.29,-21.3731,0	1/1:53:0,53:0:0:53:1894:-170.737,-15.9546,0	1/1:48:3,45:3:108:45:1616:-135.655,-4.37427,0	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/1:29:10,19:10:360:19:673:-52.1661,0,-24.0144	0/1:108:57,51:57:2048:51:1824:-131.93,0,-152.08	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:95:59,36:59:2112:36:1277:-86.6333,0,-161.751	0/1:18:9,9:9:324:9:305:-22.3587,0,-24.0873	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:77:2,75:2:72:75:2696:-236.047,-16.3426,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:174:0,174:0:0:174:6244:-562.052,-52.3792,0	1/1:71:0,71:0:0:71:2524:-227.409,-21.3731,0	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	1/1:42:0,42:0:0:42:1498:-135.114,-12.6433,0	1/1:94:0,94:0:0:94:3353:-301.985,-28.2968,0	0/1:114:64,50:64:2300:50:1796:-127.605,0,-172.943	0/1:12:4,8:4:144:8:285:-22.3821,0,-9.70126	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:36:17,19:17:608:19:680:-50.6921,0,-44.2149	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	1/1:75:0,75:0:0:75:2688:-242.164,-22.5773,0	1/1:66:1,65:1:36:65:2336:-206.901,-16.2697,0	0/1:67:34,33:34:1224:33:1184:-86.6993,0,-90.298	0/1:114:49,65:49:1760:65:2336:-176.182,0,-124.366	0/1:26:11,15:11:392:15:540:-41.1098,0,-27.7933	1/1:54:0,54:0:0:54:1925:-173.526,-16.2556,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:79:2,77:2:72:77:2768:-242.524,-16.9446,0	1/1:127:0,127:0:0:127:4560:-410.565,-38.2308,0	1/1:51:0,51:0:0:51:1830:-164.981,-15.3525,0	0/1:59:32,27:32:1152:27:968:-69.6766,0,-86.2294	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	0/1:88:43,45:43:1521:45:1616:-119.239,0,-110.69	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:41:0,41:0:0:41:1457:-131.424,-12.3422,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:45:21,24:21:756:24:856:-63.8142,0,-54.8209	0/1:60:40,20:40:1431:20:716:-46.7059,0,-111.025	1/1:145:0,145:0:0:145:5216:-469.575,-43.6494,0	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0
chr07	25250548	.	C	T	132394	PASS	AB=0.48616;ABP=9.20142;AC=140;AF=0.769231;AN=182;AO=6451;CIGAR=1X;DP=8374;DPB=8374;DPRA=0;EPP=13950.4;EPPR=4015.19;GTI=1;LEN=1;MEANALT=1.04396;MQM=45.8571;MQMR=58.396;NS=91;NUMALT=1;ODDS=2.85361;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228519;QR=68741;RO=1919;RPL=6444;RPP=13950.4;RPPR=4015.19;RPR=7;RUN=1;SAF=0;SAP=14011.2;SAR=6451;SRF=0;SRP=4170.07;SRR=1919;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:19,12:19:675:12:424:-27.0058,0,-51.7285	0/1:91:50,41:50:1796:41:1460:-99.6829,0,-134.056	0/1:148:72,76:72:2557:76:2708:-194.421,0,-185.521	1/1:184:0,184:0:0:184:6451:-570.791,-55.3895,0	1/1:52:0,52:0:0:52:1833:-163.14,-15.6536,0	1/1:76:0,76:0:0:76:2693:-236.116,-22.8783,0	0/1:128:54,74:54:1940:74:2652:-197.398,0,-135.377	1/1:121:0,121:0:0:121:4255:-371.367,-36.4246,0	1/1:120:0,120:0:0:120:4254:-370.372,-36.1236,0	0/1:139:55,83:55:1968:83:2938:-219.992,0,-135.471	1/1:47:0,47:0:0:47:1676:-149.483,-14.1484,0	0/1:79:41,38:41:1464:38:1360:-93.9838,0,-108.032	0/1:75:37,38:37:1332:38:1360:-98.057,0,-97.2467	0/1:59:30,29:30:1080:29:1020:-72.6532,0,-79.4538	0/1:90:50,40:50:1796:40:1436:-101.246,0,-134.227	1/1:63:0,63:0:0:63:2226:-195.108,-18.9649,0	1/1:70:0,70:0:0:70:2483:-217.841,-21.0721,0	1/1:67:2,65:2:72:65:2296:-193.988,-13.3342,0	1/1:67:0,67:0:0:67:2388:-209.629,-20.169,0	0/1:151:75,76:75:2688:76:2671:-191.824,0,-196.511	1/1:133:0,133:0:0:133:4708:-416.637,-40.037,0	1/1:79:0,79:0:0:79:2789:-248.356,-23.7814,0	1/1:77:0,77:0:0:77:2726:-243.246,-23.1793,0	1/1:122:0,121:0:0:121:4300:-381.145,-36.4246,0	0/1:58:30,28:30:1068:28:988:-69.0487,0,-78.8636	0/1:267:133,134:133:4744:134:4749:-340.277,0,-346.205	1/1:236:0,236:0:0:236:8348:-736.884,-71.0431,0	0/1:49:29,20:29:1040:20:720:-47.9347,0,-79.156	1/1:180:0,180:0:0:180:6344:-566.116,-54.1854,0	0/1:108:52,56:52:1872:56:1999:-144.773,0,-136.135	1/1:106:0,106:0:0:106:3725:-331.512,-31.9092,0	1/1:6:0,6:0:0:6:212:-19.2281,-1.80618,0	1/1:8:0,8:0:0:8:284:-25.6352,-2.40824,0	.:.:.:.:.:.:.:.	0/1:7:6,1:6:216:1:36:-1.42891,0,-17.6778	1/1:10:0,10:0:0:10:356:-31.561,-3.0103,0	1/1:243:1,242:1:36:242:8612:-763.215,-69.552,0	1/1:114:0,114:0:0:114:4054:-359.932,-34.3174,0	0/1:85:45,40:45:1612:40:1420:-98.8054,0,-119.583	.:.:.:.:.:.:.:.	0/1:128:57,71:57:2037:71:2506:-183.721,0,-144.945	1/1:50:0,50:0:0:50:1776:-158.34,-15.0515,0	0/1:90:43,47:43:1540:47:1669:-119.326,0,-110.794	0/1:122:57,65:57:2048:65:2324:-169.222,0,-147.796	0/1:61:30,31:30:1063:31:1089:-78.2034,0,-77.5782	1/1:150:0,150:0:0:150:5277:-472.228,-45.1545,0	1/1:121:0,121:0:0:121:4303:-375.985,-36.4246,0	0/1:138:67,70:67:2408:70:2480:-179.322,0,-174.979	1/1:111:0,110:0:0:110:3868:-344.278,-33.1133,0	1/1:64:0,64:0:0:64:2284:-203.065,-19.2659,0	1/1:117:0,117:0:0:117:4137:-370.061,-35.2205,0	0/1:11:1,10:1:36:10:360:-29.1934,0,-0.286945	0/1:81:49,32:49:1752:32:1148:-75.4668,0,-133.246	0/1:42:25,17:25:891:17:604:-41.606,0,-67.8518	1/1:18:0,18:0:0:18:636:-56.6233,-5.41854,0	0/1:107:54,53:54:1936:53:1872:-133.765,0,-142.228	0/1:93:37,56:37:1319:56:1977:-143.533,0,-90.9342	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:396:-35.813,-3.31133,0	1/1:66:0,66:0:0:66:2322:-204.606,-19.868,0	1/1:123:2,121:2:72:121:4344:-378.654,-30.19,0	0/1:11:2,9:2:72:9:320:-25.3426,0,-3.52539	1/1:118:0,118:0:0:118:4171:-371.439,-35.5215,0	1/1:150:1,149:1:36:149:5286:-467.419,-41.5562,0	0/1:66:33,33:33:1188:33:1180:-84.7149,0,-87.3225	1/1:53:0,53:0:0:53:1885:-167.614,-15.9546,0	1/1:216:1,215:1:36:215:7552:-663.964,-61.4242,0	0/1:81:45,36:45:1605:36:1281:-87.6416,0,-120.303	0/1:32:18,14:18:648:14:500:-35.2208,0,-48.983	1/1:99:0,99:0:0:99:3506:-307.262,-29.802,0	0/1:106:68,38:68:2428:38:1352:-89.3557,0,-186.414	0/1:22:12,10:12:432:10:356:-25.3953,0,-32.5164	1/1:97:0,97:0:0:97:3472:-305.695,-29.1999,0	1/1:73:1,72:1:36:72:2538:-219.879,-18.3779,0	0/1:126:68,58:68:2414:58:2044:-143.825,0,-178.774	0/1:107:52,55:52:1872:55:1963:-142.71,0,-136.231	0/1:95:57,38:57:2052:38:1333:-88.3543,0,-154.992	1/1:88:0,88:0:0:88:3129:-275.373,-26.4906,0	1/1:13:0,13:0:0:13:464:-40.4408,-3.91339,0	1/1:90:0,90:0:0:90:3216:-286.41,-27.0927,0	1/1:56:0,56:0:0:56:1956:-171.343,-16.8577,0	1/1:123:0,123:0:0:123:4335:-383.668,-37.0267,0	1/1:121:1,120:1:36:120:4253:-375.229,-32.8512,0	0/1:71:44,27:44:1584:27:964:-63.8151,0,-121.42	0/1:91:49,42:49:1760:42:1473:-104.559,0,-131.064	0/1:183:95,88:95:3408:88:3140:-224.486,0,-251.602	0/1:55:27,28:27:972:28:992:-69.3756,0,-70.9136	1/1:76:0,76:0:0:76:2689:-235.753,-22.8783,0	1/1:103:0,103:0:0:103:3653:-321.135,-31.0061,0	0/1:42:20,22:20:720:22:756:-54.4233,0,-52.48	0/1:92:53,39:53:1900:39:1373:-94.3051,0,-141.782	0/1:103:69,34:69:2484:34:1190:-74.4568,0,-192.72	1/1:33:0,33:0:0:33:1176:-104.92,-9.93399,0	1/1:132:0,132:0:0:132:4695:-415.968,-39.736,0
chr07	25276410	.	A	G	194756	PASS	AB=0.509248;ABP=6.54453;AC=142;AF=0.763441;AN=186;AO=9098;CIGAR=1X;DP=11453;DPB=11453;DPRA=62.2337;EPP=19759.1;EPPR=5095.13;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.9923;MQMR=59.9822;NS=93;NUMALT=1;ODDS=2.64658;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=324646;QR=82085;RO=2353;RPL=9098;RPP=19759.1;RPPR=5103.8;RPR=0;RUN=1;SAF=9098;SAP=19759.1;SAR=0;SRF=2352;SRP=5103.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:43,25:43:1492:25:891:-60.0387,0,-114.103	0/1:191:95,96:95:3361:96:3425:-250.966,0,-245.207	0/1:154:78,76:78:2732:76:2713:-198.054,0,-199.768	1/1:297:0,297:0:0:297:10561:-950.4,-89.4059,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:233:117,116:117:4096:116:4149:-303.453,0,-298.695	1/1:142:0,141:0:0:141:4999:-449.698,-42.4452,0	1/1:136:0,136:0:0:136:4820:-433.955,-40.9401,0	0/1:45:27,18:27:931:18:644:-44.7442,0,-70.5552	1/1:84:0,84:0:0:84:2982:-268.613,-25.2865,0	0/1:70:36,34:36:1238:34:1220:-89.0347,0,-90.6478	0/1:50:14,36:14:472:36:1274:-99.91,0,-27.7485	0/1:101:34,67:34:1156:67:2388:-184.774,0,-73.9362	0/1:64:24,40:24:842:40:1424:-109.192,0,-56.8311	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:79:0,79:0:0:79:2803:-252.511,-23.7814,0	1/1:56:0,56:0:0:56:1988:-179.193,-16.8577,0	1/1:50:0,50:0:0:50:1772:-159.759,-15.0515,0	0/1:268:128,140:128:4427:140:4983:-367.937,0,-317.94	1/1:185:0,185:0:0:185:6525:-587.337,-55.6906,0	1/1:208:0,208:0:0:208:7457:-671.171,-62.6142,0	1/1:161:1,160:1:36:160:5724:-511.677,-44.8676,0	1/1:212:0,212:0:0:212:7612:-685.114,-63.8184,0	0/1:124:56,68:56:1960:68:2444:-182.887,0,-139.348	0/1:395:212,183:212:7410:183:6536:-469.416,0,-548.061	1/1:231:0,231:0:0:231:8248:-742.331,-69.5379,0	0/1:25:11,14:11:384:14:496:-37.4485,0,-27.3689	1/1:355:0,355:0:0:355:12679:-1140.94,-106.866,0	0/1:204:105,99:105:3678:99:3529:-256.409,0,-269.819	1/1:231:5,226:5:172:226:8046:-708.344,-53.72,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:13:0,13:0:0:13:454:-41.1912,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:12:7,5:7:240:5:180:-12.9397,0,-18.3223	1/1:201:0,201:0:0:201:7174:-645.715,-60.507,0	1/1:216:1,215:1:32:215:7685:-688.486,-61.8232,0	0/1:63:24,39:24:848:39:1400:-107.334,0,-57.6748	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:183:87,96:87:3049:96:3430:-253.824,0,-219.554	1/1:40:0,40:0:0:40:1415:-127.647,-12.0412,0	0/1:161:67,94:67:2356:94:3343:-252.623,0,-163.835	0/1:74:31,43:31:1087:43:1536:-116.257,0,-75.8622	0/1:53:22,31:22:767:31:1104:-83.716,0,-53.3948	1/1:145:0,145:0:0:145:5196:-467.778,-43.6494,0	1/1:145:0,145:0:0:145:5208:-468.857,-43.6494,0	0/1:161:94,67:94:3297:67:2408:-168.51,0,-248.487	1/1:202:4,198:4:140:198:7099:-626.022,-47.8635,0	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0	1/1:267:0,267:0:0:267:9541:-858.644,-80.375,0	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:186:82,104:82:2830:104:3732:-280.084,0,-198.951	0/1:119:53,66:53:1856:66:2350:-175.935,0,-131.497	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:157:75,82:75:2580:82:2925:-216.222,0,-185.191	0/1:68:36,32:36:1271:32:1139:-82.3483,0,-94.2221	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:161:0,161:0:0:161:5760:-518.516,-48.4658,0	1/1:147:2,145:2:72:145:5167:-458.334,-37.4147,0	.:.:.:.:.:.:.:.	1/1:263:0,263:0:0:263:9396:-845.558,-79.1709,0	1/1:230:0,230:0:0:230:8170:-735.314,-69.2369,0	0/1:49:28,21:28:988:21:756:-53.6168,0,-74.4834	1/1:112:0,112:0:0:112:3995:-359.738,-33.7154,0	1/1:232:0,232:0:0:232:8263:-743.684,-69.839,0	0/1:159:125,34:125:4365:34:1220:-62.243,0,-345.168	0/1:34:8,26:8:288:26:927:-73.5123,0,-16.0324	1/1:99:1,98:1:36:98:3489:-310.623,-26.2037,0	0/1:91:42,48:42:1467:48:1711:-126.969,0,-105.018	0/1:15:5,10:5:176:10:341:-26.5023,0,-11.6696	1/1:171:0,171:0:0:171:6112:-550.18,-51.4761,0	1/1:71:0,71:0:0:71:2539:-228.76,-21.3731,0	0/1:310:144,166:144:4998:166:5905:-438.24,0,-355.886	0/1:220:118,102:118:4102:102:3646:-262.115,0,-303.145	0/1:52:32,20:32:1124:20:714:-48.9334,0,-85.8144	1/1:88:0,88:0:0:88:3147:-283.455,-26.4906,0	1/1:19:0,19:0:0:19:658:-59.5396,-5.71957,0	1/1:125:1,124:1:32:124:4447:-397.2,-34.4294,0	1/1:177:0,177:0:0:177:6328:-569.61,-53.2823,0	1/1:282:0,282:0:0:282:10089:-907.943,-84.8905,0	1/1:87:0,87:0:0:87:3085:-277.878,-26.1896,0	0/1:67:27,40:27:944:40:1420:-107.928,0,-65.1051	0/1:80:44,36:44:1505:36:1274:-90.8791,0,-111.657	0/1:127:48,79:48:1680:79:2808:-214.73,0,-113.256	0/1:47:23,24:23:800:24:856:-63.2127,0,-58.1701	1/1:87:0,87:0:0:87:3102:-279.399,-26.1896,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	0/1:68:31,37:31:1084:37:1311:-97.8208,0,-77.3988	0/1:129:62,67:62:2164:67:2384:-175.985,0,-156.193	0/1:60:34,26:34:1196:26:936:-66.4977,0,-89.8836	1/1:179:0,179:0:0:179:6380:-574.288,-53.8844,0	1/1:96:2,94:2:72:94:3351:-294.971,-22.0622,0
chr07	25323724	.	T	C	35168.4	PASS	AB=0.493858;ABP=4.18394;AC=46;AF=0.244681;AN=188;AO=1788;CIGAR=1X;DP=8096;DPB=8096;DPRA=0.961302;EPP=2295.78;EPPR=5534.67;GTI=2;LEN=1;MEANALT=1.01887;MQM=59.7858;MQMR=59.9946;NS=94;NUMALT=1;ODDS=4.66141;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63844;QR=226114;RO=6306;RPL=1581;RPP=2295.78;RPPR=5534.67;RPR=207;RUN=1;SAF=1788;SAP=3885.6;SAR=0;SRF=6306;SRP=13696.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:32,19:32:1152:19:680:-46.1748,0,-88.6376	0/1:52:21,31:21:752:31:1088:-82.5734,0,-52.3527	0/1:112:50,62:50:1784:62:2220:-166.349,0,-127.127	0/0:236:236,0:236:8441:0:0:0,-71.0431,-759.692	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:81:44,37:44:1564:37:1332:-95.799,0,-116.668	0/0:153:153,0:153:5471:0:0:0,-46.0576,-492.518	0/0:123:122,1:122:4372:1:36:0,-33.4284,-390.055	0/1:82:36,46:36:1279:46:1652:-124.193,0,-90.728	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:104:42,62:42:1500:62:2205:-167.404,0,-103.987	0/1:76:28,48:28:1008:48:1716:-131.846,0,-68.1581	0/1:80:33,47:33:1180:47:1677:-127.132,0,-82.4256	0/1:67:40,27:40:1431:27:968:-67.2637,0,-108.918	0/0:72:72,0:72:2583:0:0:0,-21.6742,-232.718	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:125:50,75:50:1788:75:2674:-203.265,0,-123.574	0/1:178:104,74:104:3724:74:2630:-183.357,0,-281.778	0/0:104:104,0:104:3725:0:0:0,-31.3071,-335.449	0/0:138:138,0:138:4968:0:0:0,-41.5421,-447.266	0/0:54:51,3:51:1824:3:108:0,-6.18045,-154.366	0/1:80:37,43:37:1324:43:1531:-113.771,0,-95.3797	0/1:251:128,123:128:4574:123:4378:-318.621,0,-336.266	0/0:253:253,0:253:9096:0:0:0,-76.1606,-818.581	0/1:35:9,26:9:324:26:936:-73.3948,0,-18.9698	0/0:222:221,1:221:7936:1:36:0,-63.2304,-710.662	0/1:79:36,43:36:1281:43:1536:-114.748,0,-91.8099	0/0:114:114,0:114:4081:0:0:0,-34.3174,-367.474	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:165:165,0:165:5932:0:0:0,-49.6699,-533.985	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.728	0/1:34:15,19:15:536:19:684:-51.6544,0,-38.3398	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:74:40,34:40:1436:34:1209:-86.8364,0,-107.261	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:132:102,30:102:3654:30:1067:-56.6037,0,-289.326	0/1:48:27,21:27:972:21:756:-53.9131,0,-73.3485	0/1:52:26,26:26:936:26:924:-67.8232,0,-68.9059	0/0:188:188,0:188:6752:0:0:0,-56.5936,-607.746	0/0:75:74,1:74:2645:1:36:0,-18.979,-234.697	0/1:181:104,77:104:3740:77:2759:-194.053,0,-282.312	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:103:102,1:102:3668:1:36:0,-27.4078,-326.724	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:91:47,44:47:1692:44:1584:-115.453,0,-125.173	0/1:95:46,49:46:1652:49:1750:-128.548,0,-120.371	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:158:84,74:84:3007:74:2641:-190.368,0,-223.293	0/1:54:34,20:34:1201:20:712:-48.151,0,-92.138	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	0/0:114:112,2:112:4010:2:72:0,-27.4807,-354.251	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:157:157,0:157:5625:0:0:0,-47.2617,-506.369	0/0:130:130,0:130:4663:0:0:0,-39.1339,-419.83	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3501	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:129:128,1:128:4581:1:36:0,-35.2346,-408.855	0/1:148:66,82:66:2363:82:2916:-218.1,0,-168.375	0/1:48:28,20:28:1004:20:720:-50.6778,0,-76.2264	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:40:14,26:14:504:26:936:-72.5174,0,-33.6569	0/1:22:9,13:9:320:13:464:-35.4748,0,-22.5197	0/0:207:207,0:207:7427:0:0:0,-62.3132,-668.472	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.987	0/1:159:91,67:91:3276:67:2401:-168.349,0,-247.136	0/1:155:73,82:73:2616:82:2918:-216.187,0,-189.028	0/1:64:34,30:34:1220:30:1062:-76.6241,0,-90.8409	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:95:95,0:95:3407:0:0:0,-28.5978,-306.843	0/0:76:75,1:75:2662:1:36:0,-19.28,-236.225	0/0:164:164,0:164:5892:0:0:0,-49.3689,-530.387	0/0:54:53,0:53:1908:0:0:0,-15.9546,-171.706	0/1:75:37,38:37:1332:38:1355:-99.6698,0,-97.6051	0/1:40:19,21:19:684:21:752:-55.9627,0,-49.8491	0/1:149:71,78:71:2548:78:2792:-206.667,0,-184.717	0/1:25:6,19:6:212:19:666:-52.7369,0,-11.899	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.037	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:66:30,36:30:1080:36:1292:-96.7158,0,-77.6453	0/1:101:64,37:64:2295:37:1317:-88.4227,0,-176.406	0/1:67:24,43:24:864:43:1544:-119.084,0,-57.9136	0/0:142:142,0:142:5100:0:0:0,-42.7463,-459.141	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959
chr07	25323754	.	T	C	28499.8	PASS	AB=0.496288;ABP=3.42946;AC=46;AF=0.244681;AN=188;AO=1758;CIGAR=1X;DP=7936;DPB=7936;DPRA=1.03043;EPP=3820.46;EPPR=13418.4;GTI=2;LEN=1;MEANALT=1;MQM=59.7992;MQMR=59.9888;NS=94;NUMALT=1;ODDS=4.33674;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62003;QR=220134;RO=6178;RPL=1758;RPP=3820.46;RPPR=13418.4;RPR=0;RUN=1;SAF=1758;SAP=3820.46;SAR=0;SRF=6178;SRP=13418.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:32,19:32:1140:19:671:-45.3614,0,-87.5567	0/1:51:20,31:20:720:31:1100:-83.9574,0,-49.7762	0/1:114:51,63:51:1824:63:2212:-165.026,0,-130.124	0/0:223:222,1:222:7915:1:36:0,-63.5314,-708.778	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:80:45,35:45:1597:35:1230:-86.92,0,-119.936	0/0:148:148,0:148:5286:0:0:0,-44.5524,-475.876	0/0:121:120,1:120:4272:1:36:0,-32.8264,-381.059	0/1:81:35,46:35:1251:46:1619:-121.524,0,-88.5108	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:97:43,54:43:1523:54:1896:-141.713,0,-108.162	0/1:75:26,49:26:915:49:1744:-134.666,0,-60.0883	0/1:77:32,45:32:1126:45:1563:-117.775,0,-78.4673	0/1:66:40,26:40:1424:26:902:-61.6249,0,-108.589	0/0:69:69,0:69:2458:0:0:0,-20.7711,-221.474	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:123:49,74:49:1744:74:2588:-196.133,0,-120.218	0/1:172:101,71:101:3590:71:2471:-170.857,0,-271.531	0/0:105:105,0:105:3752:0:0:0,-31.6081,-337.881	0/0:138:138,0:138:4944:0:0:0,-41.5421,-445.109	0/0:52:49,3:49:1747:3:108:0,-5.57839,-147.438	0/1:74:33,41:33:1167:41:1437:-107.239,0,-83.0602	0/1:245:123,122:123:4375:122:4312:-314.499,0,-320.171	0/0:244:244,0:244:8666:0:0:0,-73.4513,-779.937	0/1:34:9,25:9:324:25:873:-68.6495,0,-19.2708	0/0:220:219,1:219:7785:1:36:0,-62.6283,-697.085	0/1:78:34,44:34:1208:44:1563:-117.477,0,-85.5457	0/0:111:111,0:111:3971:0:0:0,-33.4143,-357.58	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:31:31,0:31:1079:0:0:0,-9.33193,-97.4149	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:160:160,0:160:5722:0:0:0,-48.1648,-515.096	0/0:125:125,0:125:4448:0:0:0,-37.6287,-400.491	0/1:34:15,19:15:540:19:671:-50.4799,0,-38.7015	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:73:40,33:40:1432:33:1171:-83.7199,0,-107.202	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:124:95,29:95:3403:29:1032:-55.8642,0,-269.156	0/1:49:29,20:29:1036:20:712:-49.6515,0,-78.8034	0/1:51:26,25:26:924:25:878:-63.9831,0,-68.1251	0/0:186:186,0:186:6613:0:0:0,-55.9916,-595.246	0/0:73:72,1:72:2560:1:36:0,-18.3769,-227.05	0/1:177:102,75:102:3638:75:2649:-185.365,0,-274.342	0/0:91:91,0:91:3234:0:0:0,-27.3937,-291.282	0/0:102:101,1:101:3583:1:36:0,-27.1068,-319.078	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:89:47,42:47:1674:42:1504:-108.858,0,-124.154	0/1:92:43,49:43:1532:49:1752:-129.155,0,-110.478	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:155:82,73:82:2940:73:2555:-183.532,0,-218.17	0/1:49:30,19:30:1068:19:680:-46.7787,0,-81.6816	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.893	0/0:110:108,2:108:3859:2:72:0,-26.2766,-340.669	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:155:155,0:155:5536:0:0:0,-46.6596,-498.278	0/0:130:130,0:130:4645:0:0:0,-39.1339,-418.211	0/1:23:14,9:14:500:9:320:-22.2187,0,-38.4125	0/0:65:65,0:65:2287:0:0:0,-19.5669,-206.09	0/0:129:128,1:128:4561:1:36:0,-35.2346,-407.058	0/1:145:62,83:62:2211:83:2949:-221.896,0,-155.605	0/1:47:28,19:28:1008:19:667:-46.2047,0,-76.8879	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/1:39:14,25:14:504:25:900:-69.5799,0,-33.9579	0/1:23:10,13:10:360:13:464:-35.1738,0,-25.8206	0/0:199:199,0:199:7104:0:0:0,-59.905,-639.419	0/0:133:133,0:133:4720:0:0:0,-40.037,-424.96	0/1:153:88,65:88:3152:65:2293:-160.564,0,-237.848	0/1:153:71,82:71:2548:82:2915:-216.522,0,-183.513	0/1:63:33,30:33:1167:30:1043:-75.2112,0,-86.3715	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:90:90,0:90:3201:0:0:0,-27.0927,-288.313	0/0:77:76,1:76:2679:1:36:0,-19.581,-237.756	0/0:161:161,0:161:5739:0:0:0,-48.4658,-516.626	0/0:53:53,0:53:1891:0:0:0,-15.9546,-169.84	0/1:75:37,38:37:1323:38:1321:-96.605,0,-96.7941	0/1:41:19,22:19:671:22:788:-58.9002,0,-48.3736	0/1:148:70,78:70:2508:78:2730:-201.388,0,-181.42	0/1:25:6,19:6:212:19:656:-51.8327,0,-11.899	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.324	0/0:60:60,0:60:2123:0:0:0,-18.0618,-191.336	0/1:65:29,36:29:1018:36:1277:-95.6642,0,-72.3635	0/1:99:63,36:63:2235:36:1251:-83.0848,0,-171.612	0/1:65:22,43:22:761:43:1540:-119.326,0,-49.2397	0/0:139:139,0:139:4930:0:0:0,-41.8432,-443.849	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282
chr07	25323982	.	A	T	35501.3	PASS	AB=0.501317;ABP=3.07323;AC=46;AF=0.244681;AN=188;AO=2119;CIGAR=1X;DP=9224;DPB=9224;DPRA=1.08465;EPP=4569.68;EPPR=15199.8;GTI=2;LEN=1;MEANALT=1.03846;MQM=59.9924;MQMR=59.9975;NS=94;NUMALT=1;ODDS=3.60509;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75621;QR=253943;RO=7102;RPL=2115;RPP=4569.68;RPPR=15199.8;RPR=4;RUN=1;SAF=0;SAP=4604.36;SAR=2119;SRF=0;SRP=15424.8;SRR=7102;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:15,17:15:536:17:589:-43.7012,0,-38.9419	0/1:134:67,67:67:2395:67:2400:-175.919,0,-175.468	0/1:122:80,42:80:2847:42:1499:-98.4782,0,-219.743	0/0:200:200,0:200:7129:0:0:0,-60.206,-641.667	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:42:24,18:24:860:18:644:-45.6473,0,-65.0786	0/0:107:107,0:107:3811:0:0:0,-32.2102,-343.189	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/1:79:41,38:41:1468:38:1368:-99.6395,0,-108.635	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:93:49,44:49:1764:44:1576:-114.136,0,-131.048	0/1:95:43,52:43:1539:52:1835:-136.829,0,-110.2	0/1:78:34,44:34:1220:44:1571:-118.201,0,-86.6265	0/1:82:50,32:50:1800:32:1148:-78.9454,0,-137.598	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:230:126,104:126:4520:104:3690:-263.065,0,-337.73	0/1:147:95,52:95:3400:52:1860:-123.428,0,-261.963	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.846	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:73:70,2:70:2494:2:72:0,-15.1973,-217.875	0/1:72:29,43:29:1044:43:1527:-116.047,0,-72.6006	0/1:261:122,138:122:4322:138:4939:-366.071,0,-310.572	0/0:195:195,0:195:6962:0:0:0,-58.7008,-626.646	0/1:53:24,29:24:852:29:1006:-74.8931,0,-61.0458	0/0:270:270,0:270:9684:0:0:0,-81.2781,-871.508	0/1:121:57,64:57:2036:64:2288:-169.749,0,-147.088	0/0:106:102,4:102:3651:4:144:0,-18.5956,-315.48	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:264:264,0:264:9402:0:0:0,-79.4719,-846.145	0/0:175:175,0:175:6276:0:0:0,-52.6802,-564.932	0/1:62:28,34:28:995:34:1213:-90.8114,0,-71.2002	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:148:70,78:70:2495:78:2785:-206.337,0,-180.25	0/0:56:56,0:56:2007:0:0:0,-16.8577,-180.903	0/1:166:81,85:81:2908:85:3052:-224.938,0,-211.984	0/1:119:60,59:60:2139:59:2116:-154.886,0,-156.955	0/1:81:48,33:48:1699:33:1180:-82.1246,0,-128.812	0/0:105:105,0:105:3739:0:0:0,-31.6081,-336.712	0/0:93:93,0:93:3310:0:0:0,-27.9958,-298.119	0/1:176:91,85:91:3242:85:3040:-220.849,0,-239.02	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/0:121:120,0:120:4304:0:0:0,-36.1236,-387.176	0/0:156:156,0:156:5554:0:0:0,-46.9607,-499.987	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:123:67,56:67:2369:56:1996:-142.887,0,-176.441	0/1:30:13,17:13:464:17:608:-46.0211,0,-33.0666	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:109:48,61:48:1680:61:2188:-164.373,0,-118.672	0/1:45:28,17:28:1000:17:608:-41.5057,0,-76.769	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:134:133,1:133:4772:1:36:0,-36.7397,-426.038	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.5925	0/0:266:266,0:266:9532:0:0:0,-80.074,-857.833	0/0:178:170,8:170:6096:8:288:0,-27.3159,-522.473	0/1:75:47,28:47:1692:28:1008:-68.4591,0,-129.99	0/0:95:95,0:95:3383:0:0:0,-28.5978,-304.686	0/0:221:220,1:220:7875:1:36:0,-62.9294,-705.178	0/1:102:41,61:41:1464:61:2180:-165.761,0,-101.351	0/1:28:18,10:18:644:10:356:-23.9524,0,-49.8618	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:128:60,68:60:2151:68:2431:-180.512,0,-155.325	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3376	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.966	0/0:71:71,0:71:2526:0:0:0,-21.3731,-227.583	0/1:86:38,48:38:1351:48:1697:-127.126,0,-96.001	0/1:266:111,155:111:3971:155:5536:-418.293,0,-277.506	0/1:72:41,31:41:1459:31:1108:-78.3568,0,-109.931	0/0:116:116,0:116:4139:0:0:0,-34.9195,-372.694	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:168:167,1:167:5970:1:36:0,-46.9748,-533.808	0/0:100:100,0:100:3570:0:0:0,-30.103,-321.507	0/0:229:223,6:223:7983:6:203:0,-50.3347,-699.89	0/0:126:126,0:126:4507:0:0:0,-37.9298,-405.798	0/1:91:44,47:44:1584:47:1672:-123.374,0,-115.458	0/1:139:68,71:68:2448:71:2536:-186.648,0,-178.731	0/1:164:78,86:78:2791:86:3086:-228.598,0,-202.061	0/1:51:24,27:24:860:27:960:-71.3637,0,-62.3693	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/1:40:18,22:18:648:22:781:-58.5709,0,-46.6107	0/1:84:45,39:45:1616:39:1381:-99.3002,0,-120.443	0/1:105:36,69:36:1278:69:2456:-189.687,0,-83.7135	0/0:107:107,0:107:3827:0:0:0,-32.2102,-344.626	0/0:143:143,0:143:5136:0:0:0,-43.0473,-462.38
chr07	25337664	.	T	A	18689.7	PASS	AB=0.483926;ABP=8.24585;AC=46;AF=0.247312;AN=186;AO=1140;CIGAR=1X;DP=5354;DPB=5354;DPRA=0.934404;EPP=2478.49;EPPR=9140.57;GTI=2;LEN=1;MEANALT=1.04;MQM=59.9289;MQMR=59.9843;NS=93;NUMALT=1;ODDS=3.52433;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40794;QR=150710;RO=4212;RPL=2;RPP=2461.15;RPPR=9140.57;RPR=1138;RUN=1;SAF=2;SAP=2461.15;SAR=1138;SRF=0;SRP=9149.25;SRR=4212;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:33,30:33:1176:30:1076:-78.188,0,-87.1829	0/1:47:20,27:20:712:27:972:-73.6495,0,-50.2582	0/1:106:48,58:48:1701:58:2065:-154.21,0,-121.454	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:67:43,24:43:1544:24:860:-57.5528,0,-119.084	0/0:97:97,0:97:3469:0:0:0,-29.1999,-312.42	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.193	0/1:43:20,23:20:716:23:828:-61.8998,0,-51.8234	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:63:36,27:36:1292:27:964:-68.1038,0,-97.6189	0/1:49:23,26:23:828:26:932:-69.4402,0,-60.0936	0/1:41:19,22:19:684:22:792:-59.2634,0,-49.5481	0/1:40:17,23:17:604:23:824:-62.4421,0,-42.6494	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7719	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:82:46,36:46:1640:36:1288:-91.5391,0,-123.204	0/1:75:46,29:46:1641:29:1044:-71.6976,0,-125.399	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.128	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:58:55,3:55:1949:3:108:0,-7.38457,-165.609	0/1:108:50,58:50:1785:58:2073:-154.328,0,-128.419	0/1:150:81,69:81:2881:69:2435:-174.247,0,-214.371	0/0:187:187,0:187:6708:0:0:0,-56.2926,-603.778	0/1:16:6,10:6:216:10:352:-27.2017,0,-14.974	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/1:76:37,39:37:1328:39:1396:-103.061,0,-96.944	0/0:87:85,2:85:3048:2:72:0,-19.4895,-267.849	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:18:4,14:4:144:14:504:-40.2796,0,-7.89508	0/0:142:142,0:142:5104:0:0:0,-42.7463,-459.501	0/0:117:117,0:117:4166:0:0:0,-35.2205,-375.121	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:64:39,25:39:1392:25:900:-62.0551,0,-106.313	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:91:37,54:37:1332:54:1936:-147.123,0,-92.7887	0/1:32:24,8:24:860:8:288:-16.6344,0,-68.0889	0/1:19:7,11:7:252:11:392:-29.842,0,-17.2506	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.868	0/1:82:48,34:48:1713:34:1220:-85.4223,0,-129.769	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.825	0/0:137:137,0:137:4882:0:0:0,-41.2411,-439.531	0/0:94:93,1:93:3340:1:32:0,-25.0975,-297.617	.:.:.:.:.:.:.:.	0/1:126:74,52:74:2626:52:1861:-129.836,0,-198.655	0/1:31:14,17:14:504:17:612:-46.0815,0,-36.3662	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:45:31,14:31:1104:14:500:-31.7898,0,-86.1243	0/1:43:27,16:27:968:16:576:-39.2307,0,-74.4931	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:99:99,0:99:3506:0:0:0,-29.802,-315.719	0/1:25:16,9:16:576:9:320:-21.6166,0,-44.6492	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.941	0/1:111:52,59:52:1860:59:2107:-156.472,0,-134.265	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:28:21,7:21:756:7:244:-13.8706,0,-59.9384	0/1:14:5,9:5:165:9:324:-25.2914,0,-10.9592	0/0:90:89,1:89:3189:1:36:0,-23.4944,-283.633	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:96:53,43:53:1889:43:1544:-110.345,0,-141.383	0/1:81:44,37:44:1584:37:1332:-95.799,0,-118.468	0/1:69:31,38:31:1116:38:1360:-101.93,0,-79.9806	0/0:63:63,0:63:2253:0:0:0,-18.9649,-203.031	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.72	0/0:93:93,0:93:3310:0:0:0,-27.9958,-298.108	0/0:123:122,1:122:4369:1:36:0,-33.4284,-389.784	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:57:31,25:31:1089:25:894:-63.5624,0,-81.1001	0/1:33:15,18:15:540:18:644:-48.3566,0,-39.0025	0/1:78:29,49:29:1044:49:1756:-134.844,0,-70.7945	0/1:18:8,10:8:288:10:349:-26.327,0,-20.8489	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/1:46:24,22:24:864:22:786:-57.2167,0,-64.2352	0/1:33:10,23:10:356:23:828:-64.9055,0,-22.4473	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168
chr07	25591971	.	G	A	81564.6	PASS	AB=0.480419;ABP=28.0962;AC=46;AF=0.244681;AN=188;AO=3647;CIGAR=1X;DP=16257;DPB=16257;DPRA=1.0478;EPP=7922.37;EPPR=27328.8;GTI=1;LEN=1;MEANALT=1.16071;MQM=59.6932;MQMR=59.9229;NS=94;NUMALT=1;ODDS=8.15209;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130054;QR=444284;RO=12588;RPL=1566;RPP=160.929;RPPR=533.72;RPR=2081;RUN=1;SAF=1566;SAP=160.929;SAR=2081;SRF=5416;SRP=534.931;SRR=7172;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:140:70,70:70:2473:70:2482:-181.467,0,-180.679	0/1:306:140,166:140:4946:166:5910:-439.808,0,-353.176	0/1:227:132,95:132:4651:95:3416:-239.129,0,-350.414	0/0:457:457,0:457:16104:0:0:0,-137.571,-1446.2	0/0:167:167,0:167:5887:0:0:0,-50.272,-529.943	0/0:141:141,0:141:4990:0:0:0,-42.4452,-449.239	0/1:198:100,97:100:3537:97:3455:-251.562,0,-259.018	0/0:254:249,2:249:8762:2:72:0,-69.0281,-781.773	0/1:204:112,92:112:3984:92:3272:-233.279,0,-297.336	0/1:189:90,97:90:3183:97:3442:-253.135,0,-230.166	0/0:87:87,0:87:3050:0:0:0,-26.1896,-274.73	0/1:197:113,84:113:3994:84:3024:-212.997,0,-300.348	0/1:148:75,73:75:2680:73:2601:-189.136,0,-196.893	0/1:133:52,81:52:1850:81:2908:-221.902,0,-126.738	0/1:155:88,67:88:3088:67:2408:-170.306,0,-231.49	0/0:121:121,0:121:4258:0:0:0,-36.4246,-383.33	0/0:134:134,0:134:4674:0:0:0,-40.338,-420.828	0/0:102:101,0:101:3498:0:0:0,-30.404,-314.823	0/0:81:81,0:81:2849:0:0:0,-24.3834,-256.646	0/1:350:186,164:186:6569:164:5867:-422.776,0,-485.935	0/1:294:151,143:151:5340:143:5116:-372.068,0,-392.221	0/0:141:141,0:141:5013:0:0:0,-42.4452,-451.319	0/1:181:91,90:91:3226:90:3200:-233.73,0,-236.076	0/0:208:193,15:193:6782:15:536:0,-14.0394,-561.517	0/1:149:90,59:90:3221:59:2124:-146.565,0,-245.249	0/1:355:188,167:188:6654:167:5960:-429.557,0,-492.075	0/0:421:421,0:421:14915:0:0:0,-126.734,-1342.07	0/1:59:30,29:30:1059:29:1029:-75.1604,0,-77.859	0/0:444:444,0:444:15751:0:0:0,-133.657,-1417.29	0/0:188:186,1:186:6555:1:36:0,-52.9842,-586.502	0/0:220:220,0:220:7820:0:0:0,-66.2266,-703.727	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:7:2,5:2:68:5:176:-14.0778,0,-4.3505	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:366:366,0:366:12794:0:0:0,-110.177,-1151.31	0/0:180:180,0:180:6350:0:0:0,-54.1854,-571.595	0/1:64:41,23:41:1444:23:804:-53.3976,0,-110.979	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:290:173,117:173:6108:117:4184:-289.371,0,-462.525	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.831	0/1:317:165,152:165:5857:152:5426:-392.818,0,-431.447	0/1:155:81,74:81:2840:74:2619:-189.2,0,-209.171	0/1:143:78,65:78:2735:65:2323:-166.273,0,-203.343	0/0:166:166,0:166:5856:0:0:0,-49.971,-527.098	0/0:206:204,0:204:7184:0:0:0,-61.4101,-646.323	0/1:295:153,141:153:5425:141:5023:-363.465,0,-399.65	0/0:178:177,0:177:6236:0:0:0,-53.2823,-561.014	0/0:229:228,1:228:8056:1:36:0,-65.338,-721.45	0/0:201:201,0:201:7099:0:0:0,-60.507,-638.967	0/1:12:4,8:4:140:8:288:-22.655,0,-9.33222	0/1:215:100,115:100:3559:115:4072:-301.929,0,-255.795	0/1:46:25,21:25:896:21:756:-54.5142,0,-67.113	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/1:223:109,113:109:3835:113:4034:-296.139,0,-278.261	0/1:99:51,48:51:1824:48:1720:-125.283,0,-134.639	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:169:169,0:169:5945:0:0:0,-50.8741,-535.112	0/0:187:186,1:186:6538:1:36:0,-52.6943,-584.912	0/1:11:4,7:4:144:7:252:-19.7153,0,-10.0023	0/0:242:239,0:239:8459:0:0:0,-71.9462,-760.974	0/0:307:304,2:304:10738:2:72:0,-85.5451,-959.548	0/1:121:72,49:72:2497:49:1749:-121.266,0,-188.478	0/0:155:154,0:154:5445:0:0:0,-46.3586,-487.674	0/0:298:297,1:297:10519:1:36:0,-86.1087,-943.018	0/1:202:79,123:79:2815:123:4397:-333.799,0,-192.781	0/1:63:25,38:25:887:38:1364:-104.084,0,-61.1817	0/0:153:152,0:152:5347:0:0:0,-45.7566,-481.078	0/1:105:58,47:58:2055:47:1675:-119.428,0,-153.612	0/1:20:6,14:6:212:14:504:-39.6775,0,-13.4042	0/0:184:183,1:183:6482:1:36:0,-52.4868,-580.536	0/0:165:164,0:164:5819:0:0:0,-49.3689,-523.384	0/1:270:144,126:144:5061:126:4484:-322.432,0,-373.869	0/1:285:142,143:142:5053:143:5082:-371.72,0,-369.121	0/1:266:152,114:152:5383:114:4067:-285.999,0,-404.516	0/0:205:205,0:205:7249:0:0:0,-61.7111,-652.105	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:249:249,0:249:8783:0:0:0,-74.9565,-790.462	0/0:218:215,1:215:7575:1:36:0,-61.7599,-678.079	0/0:381:381,0:381:13437:0:0:0,-114.692,-1209.13	0/0:146:146,0:146:5105:0:0:0,-43.9504,-459.602	0/1:151:83,68:83:2936:68:2418:-172.415,0,-219.017	0/1:170:91,79:91:3202:79:2808:-201.754,0,-237.231	0/1:276:152,124:152:5311:124:4412:-314.155,0,-395.047	0/1:70:46,24:46:1614:24:860:-56.6416,0,-124.102	0/0:168:168,0:168:5848:0:0:0,-50.573,-526.31	0/0:175:175,0:175:6153:0:0:0,-52.6802,-553.876	0/1:82:44,38:44:1564:38:1348:-96.9227,0,-116.367	0/1:133:65,68:65:2315:68:2423:-178.278,0,-168.573	0/1:134:42,92:42:1473:92:3253:-252.649,0,-92.5242	0/0:205:205,0:205:7233:0:0:0,-61.7111,-651.028	0/0:261:258,3:258:9097:3:99:0,-69.3322,-809.479
chr07	25591997	.	G	T	34138.8	PASS	AB=0.464222;ABP=52.7327;AC=46;AF=0.25;AN=184;AO=2098;CIGAR=1X;DP=9973;DPB=9973;DPRA=1.18878;EPP=4541.4;EPPR=16876;GTI=3;LEN=1;MEANALT=1.01887;MQM=59.7302;MQMR=59.8201;NS=92;NUMALT=1;ODDS=1.08604;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75043;QR=281396;RO=7870;RPL=2097;RPP=4550.08;RPPR=16876;RPR=1;RUN=1;SAF=1;SAP=4550.08;SAR=2097;SRF=0;SRP=17092.5;SRR=7870;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:37,25:37:1328:25:881:-60.9387,0,-101.158	0/1:244:114,130:114:4096:130:4646:-344.796,0,-295.373	0/1:118:75,41:75:2666:41:1468:-97.1369,0,-204.903	0/0:350:349,1:349:12498:1:36:0,-101.762,-1118.31	0/0:111:111,0:111:3969:0:0:0,-33.4143,-357.397	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.459	0/1:135:71,64:71:2528:64:2302:-166.74,0,-186.614	0/0:190:188,2:188:6721:2:68:0,-50.738,-597.95	0/1:98:46,52:46:1639:52:1868:-138.789,0,-118.296	0/1:111:54,57:54:1940:57:2048:-150.676,0,-140.555	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.344	0/1:73:39,34:39:1392:34:1215:-87.6801,0,-103.604	0/1:59:28,31:28:1004:31:1112:-82.6272,0,-72.9151	0/1:70:35,35:35:1256:35:1260:-92.6303,0,-91.8413	0/1:86:52,34:52:1872:34:1212:-83.4926,0,-142.871	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.133	0/0:99:99,0:99:3536:0:0:0,-29.802,-318.45	0/0:74:74,0:74:2626:0:0:0,-22.2762,-236.587	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:236:133,103:133:4745:103:3689:-261.165,0,-356.165	0/1:172:87,85:87:3112:85:3044:-222.4,0,-228.459	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.826	0/1:105:57,48:57:2035:48:1722:-123.657,0,-151.813	0/0:145:133,12:133:4739:12:428:0,-4.79054,-387.807	0/1:76:33,43:33:1172:43:1533:-115.382,0,-82.9092	0/1:259:132,127:132:4704:127:4492:-326.262,0,-345.546	0/0:250:250,0:250:8955:0:0:0,-75.2575,-805.916	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.302	0/0:300:299,1:299:10661:1:36:0,-86.7107,-955.736	0/0:148:148,0:148:5283:0:0:0,-44.5524,-475.596	0/0:172:172,0:172:6159:0:0:0,-51.7772,-554.29	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:4:3,1:3:100:1:36:-2.39415,0,-8.12632	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:164:163,0:163:5839:0:0:0,-49.0679,-525.239	0/0:141:141,0:141:5048:0:0:0,-42.4452,-454.461	0/1:31:18,13:18:644:13:468:-33.0917,0,-48.9587	.:.:.:.:.:.:.:.	0/1:240:145,95:145:5200:95:3420:-235.678,0,-395.887	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:199:104,95:104:3736:95:3361:-242.599,0,-276.534	0/1:97:49,48:49:1756:48:1728:-126.6,0,-129.053	0/1:66:39,27:39:1396:27:964:-67.2088,0,-106.071	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.042	0/0:140:140,0:140:4999:0:0:0,-42.1442,-449.859	0/1:182:95,87:95:3412:87:3113:-225.578,0,-251.969	0/0:93:93,0:93:3314:0:0:0,-27.9958,-298.471	0/0:174:173,1:173:6212:1:36:0,-48.7814,-555.574	0/0:114:114,0:114:4063:0:0:0,-34.3174,-365.858	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:136:67,69:67:2403:69:2480:-182.506,0,-175.586	0/1:29:20,9:20:720:9:324:-20.776,0,-56.3966	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:154:92,62:92:3273:62:2212:-152.984,0,-248.3	0/1:52:27,25:27:963:25:892:-64.9455,0,-71.3324	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:100:100,0:100:3552:0:0:0,-30.103,-319.835	0/0:100:100,0:100:3566:0:0:0,-30.103,-321.148	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:176:176,0:176:6298:0:0:0,-52.9813,-566.91	0/0:208:206,2:206:7361:2:72:0,-55.7775,-655.669	0/1:77:48,29:48:1706:29:1029:-69.7379,0,-130.631	0/0:117:117,0:117:4171:0:0:0,-35.2205,-372.94	0/0:195:194,1:194:6955:1:36:0,-55.1026,-622.188	0/1:88:39,49:39:1396:49:1737:-130.113,0,-97.1909	0/1:17:8,9:8:288:9:309:-23.0232,0,-21.1483	0/0:94:93,0:93:3328:0:0:0,-27.9958,-299.268	0/1:63:34,29:34:1224:29:1029:-73.9563,0,-91.5012	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/0:91:91,0:91:3224:0:0:0,-27.3937,-290.295	0/0:81:81,0:81:2873:0:0:0,-24.3834,-258.803	0/1:173:94,79:94:3380:79:2840:-203.624,0,-252.336	0/1:189:95,94:95:3380:94:3361:-245.809,0,-247.512	0/1:187:116,71:116:4155:71:2548:-173.168,0,-316.705	0/0:126:126,0:126:4498:0:0:0,-37.9298,-404.873	.:.:.:.:.:.:.:.	0/0:180:180,0:180:6448:0:0:0,-54.1854,-580.335	0/0:170:170,0:170:6085:0:0:0,-51.1751,-547.081	0/0:246:246,0:246:8809:0:0:0,-74.0534,-792.793	0/0:90:90,0:90:3209:0:0:0,-27.0927,-289.029	0/1:79:42,37:42:1512:37:1332:-96.4002,0,-112.587	0/1:113:60,53:60:2134:53:1904:-137.394,0,-158.296	0/1:163:91,72:91:3253:72:2588:-184.099,0,-243.921	0/1:46:27,19:27:968:19:684:-48.0429,0,-72.9614	0/0:98:97,0:97:3480:0:0:0,-29.1999,-313.051	0/0:85:85,0:85:3047:0:0:0,-25.5875,-274.458	0/1:32:17,15:17:612:15:540:-39.2989,0,-45.7805	0/1:42:20,22:20:716:22:792:-58.9609,0,-52.1245	0/1:62:28,34:28:1004:34:1216:-91.0827,0,-72.012	0/0:123:123,0:123:4384:0:0:0,-37.0267,-394.688	0/0:125:124,1:124:4435:1:32:0,-34.4294,-396.122
chr07	25592000	.	T	C	166034	PASS	AB=0.532001;ABP=42.6191;AC=137;AF=0.744565;AN=184;AO=7818;CIGAR=1X;DP=9925;DPB=9925;DPRA=110.256;EPP=16979.6;EPPR=4573.96;GTI=3;LEN=1;MEANALT=1.02222;MQM=59.8387;MQMR=59.7416;NS=92;NUMALT=1;ODDS=1.6233;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279102;QR=75155;RO=2105;RPL=7818;RPP=16979.6;RPPR=4573.96;RPR=0;RUN=1;SAF=0;SAP=16979.6;SAR=7818;SRF=0;SRP=4573.96;SRR=2105;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:27,37:27:949:37:1324:-100.196,0,-66.4535	0/1:243:132,111:132:4709:111:3950:-282.54,0,-350.731	0/1:113:39,74:39:1404:74:2637:-203.559,0,-92.6429	1/1:353:0,353:0:0:353:12637:-1134.41,-106.264,0	1/1:110:0,110:0:0:110:3891:-350.384,-33.1133,0	1/1:89:0,89:0:0:89:3185:-286.869,-26.7917,0	0/1:137:64,73:64:2277:73:2547:-187.726,0,-163.888	1/1:187:2,185:2:72:185:6606:-587.594,-49.4559,0	0/1:98:52,46:52:1825:46:1644:-118.746,0,-134.918	0/1:111:59,52:59:2116:52:1860:-133.129,0,-156.793	1/1:34:0,34:0:0:34:1220:-110.106,-10.235,0	0/1:74:35,39:35:1252:39:1400:-104.023,0,-90.7055	0/1:58:31,27:31:1116:27:972:-70.3382,0,-83.2886	0/1:68:35,33:35:1248:33:1180:-85.6094,0,-92.1517	0/1:86:33,53:33:1176:53:1880:-143.586,0,-80.2584	1/1:51:0,51:0:0:51:1828:-164.731,-15.3525,0	1/1:95:0,95:0:0:95:3406:-306.753,-28.5979,0	1/1:73:0,73:0:0:73:2592:-233.527,-21.9752,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:239:105,133:105:3749:133:4757:-356.281,0,-265.603	0/1:171:85,86:85:3021:86:3080:-225.923,0,-220.632	1/1:77:0,77:0:0:77:2734:-246.3,-23.1793,0	0/1:104:48,56:48:1724:56:1989:-147.975,0,-124.137	1/1:143:12,131:12:413:131:4655:-381.61,-5.54947,0	0/1:75:43,32:43:1544:32:1152:-81.4129,0,-116.675	0/1:255:128,127:128:4592:127:4537:-331.731,0,-336.423	1/1:247:0,247:0:0:247:8863:-797.622,-74.3544,0	0/1:30:17,13:17:612:13:464:-33.0666,0,-46.3825	1/1:296:0,296:0:0:296:10575:-951.62,-89.1049,0	1/1:146:0,146:0:0:146:5213:-469.299,-43.9504,0	1/1:170:0,170:0:0:170:6076:-546.836,-51.1751,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:163:0,163:0:0:163:5848:-526.42,-49.0679,0	1/1:142:0,142:0:0:142:5072:-456.614,-42.7463,0	0/1:32:13,19:13:468:19:680:-51.8962,0,-32.7907	.:.:.:.:.:.:.:.	0/1:241:95,146:95:3396:146:5214:-396.845,0,-233.22	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:197:95,102:95:3374:102:3634:-267.96,0,-244.367	0/1:96:48,48:48:1728:48:1718:-125.987,0,-126.901	0/1:69:29,40:29:1025:40:1436:-108.767,0,-71.7896	1/1:75:0,75:0:0:75:2662:-239.822,-22.5773,0	1/1:143:0,143:0:0:143:5106:-459.487,-43.0473,0	0/1:183:87,96:87:3128:96:3428:-253.139,0,-226.627	1/1:92:1,91:1:36:91:3268:-290.695,-24.0965,0	1/1:172:1,171:1:36:171:6113:-546.67,-48.1793,0	1/1:113:0,113:0:0:113:4016:-361.629,-34.0164,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:136:68,68:68:2417:68:2429:-177.924,0,-176.838	0/1:28:9,19:9:324:19:680:-53.1003,0,-21.077	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:152:62,90:62:2209:90:3203:-242.605,0,-153.315	0/1:52:25,27:25:900:27:972:-72.1443,0,-65.6671	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:97:0,97:0:0:97:3457:-311.26,-29.1999,0	1/1:100:0,100:0:0:100:3584:-322.767,-30.103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:179:0,179:0:0:179:6411:-577.073,-53.8844,0	1/1:208:2,206:2:72:206:7317:-651.713,-55.7775,0	0/1:77:30,47:30:1068:47:1671:-127.48,0,-73.1814	1/1:118:0,118:0:0:118:4213:-376.406,-35.5215,0	1/1:196:1,194:1:36:194:6942:-621.017,-55.4624,0	0/1:87:49,38:49:1745:38:1360:-94.2533,0,-131.134	0/1:17:10,7:10:360:7:252:-17.9099,0,-27.6268	1/1:94:0,94:0:0:94:3347:-301.434,-28.2968,0	0/1:63:30,33:30:1076:33:1180:-87.5422,0,-78.188	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:89:0,89:0:0:89:3154:-284.068,-26.7917,0	1/1:82:0,82:0:0:82:2925:-263.482,-24.6845,0	0/1:172:77,95:77:2732:95:3392:-253.716,0,-194.285	0/1:187:93,94:93:3301:94:3350:-245.413,0,-241.015	0/1:188:71,117:71:2537:117:4176:-319.401,0,-171.876	1/1:125:0,125:0:0:125:4453:-400.825,-37.6288,0	.:.:.:.:.:.:.:.	1/1:178:0,178:0:0:178:6355:-572.028,-53.5833,0	1/1:168:0,168:0:0:168:5976:-537.461,-50.573,0	1/1:245:0,245:0:0:245:8783:-790.454,-73.7524,0	1/1:93:0,93:0:0:93:3312:-298.297,-27.9958,0	0/1:78:37,41:37:1332:41:1472:-109.293,0,-96.7012	0/1:110:53,57:53:1908:57:2040:-150.745,0,-138.814	0/1:164:72,92:72:2564:92:3285:-246.499,0,-181.64	0/1:45:19,26:19:680:26:917:-69.2983,0,-47.9828	1/1:97:0,97:0:0:97:3483:-313.68,-29.1999,0	1/1:85:0,85:0:0:85:3056:-275.265,-25.5876,0	0/1:32:15,17:15:540:17:604:-45.0576,0,-39.2989	0/1:42:22,20:22:788:20:716:-52.1245,0,-58.6	0/1:62:34,28:34:1216:28:1004:-72.012,0,-91.0827	1/1:121:0,121:0:0:121:4237:-381.462,-36.4246,0	1/1:122:1,121:1:36:121:4321:-385.467,-33.1274,0
chr07	25637847	.	C	T	218449	PASS	AB=0.513472;ABP=12.1372;AC=141;AF=0.75;AN=188;AO=10234;CIGAR=1X;DP=13078;DPB=13078;DPRA=140.613;EPP=22217.2;EPPR=6163.48;GTI=3;LEN=1;MEANALT=1.03226;MQM=59.9935;MQMR=59.9972;NS=94;NUMALT=1;ODDS=1.41091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=365994;QR=101297;RO=2841;RPL=0;RPP=22225.9;RPPR=6163.48;RPR=10234;RUN=1;SAF=1;SAP=22217.2;SAR=10233;SRF=0;SRP=6172.16;SRR=2841;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:33,36:33:1188:36:1275:-94.2804,0,-86.4575	0/1:161:71,90:71:2548:90:3199:-239.667,0,-181.105	0/1:94:53,41:53:1884:41:1476:-104.839,0,-141.539	1/1:433:0,433:0:0:433:15478:-1392.73,-130.346,0	1/1:151:0,151:0:0:151:5421:-488.017,-45.4555,0	1/1:168:0,168:0:0:168:6032:-542.982,-50.573,0	0/1:232:106,126:106:3752:126:4508:-336.047,0,-268.04	1/1:285:0,285:0:0:285:10207:-918.555,-85.7936,0	0/1:162:75,87:75:2655:87:3124:-232.618,0,-190.428	0/1:176:99,77:99:3540:77:2760:-195.66,0,-265.828	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:85:47,38:47:1676:38:1345:-95.7606,0,-125.54	0/1:86:40,46:40:1428:46:1648:-122.72,0,-102.929	0/1:57:32,25:32:1144:25:896:-63.8016,0,-86.1108	0/1:80:38,42:38:1368:42:1500:-111.212,0,-99.3384	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:479:225,253:225:7998:253:9062:-671.301,0,-575.591	0/1:233:100,133:100:3588:133:4750:-357.515,0,-252.986	1/1:201:0,201:0:0:201:7170:-645.355,-60.507,0	0/1:147:64,83:64:2273:83:2958:-222.201,0,-160.579	1/1:158:12,146:12:428:146:5217:-430.808,-8.70393,0	0/1:105:47,58:47:1664:58:2080:-155.862,0,-118.437	0/1:504:240,264:240:8576:264:9397:-693.972,0,-620.107	1/1:413:2,411:2:68:411:14748:-1320.59,-117.868,0	0/1:49:19,30:19:684:30:1080:-82.7628,0,-47.1399	1/1:271:0,271:0:0:271:9699:-872.856,-81.5791,0	1/1:187:3,184:3:108:184:6595:-583.55,-46.2174,0	1/1:186:0,186:0:0:186:6671:-600.464,-55.9916,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:31:0,31:0:0:31:1101:-99.3984,-9.33193,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:5:3,2:3:99:2:72:-5.33157,0,-7.73143	1/1:267:0,267:0:0:267:9570:-861.253,-80.375,0	1/1:309:0,309:0:0:309:10988:-988.816,-93.0183,0	0/1:61:35,26:35:1252:26:936:-66.1966,0,-94.6222	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:282:142,140:142:5050:140:5009:-366.065,0,-369.755	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:206:100,106:100:3543:106:3795:-279.734,0,-257.067	0/1:102:52,50:52:1852:50:1800:-131.577,0,-136.255	0/1:64:39,25:39:1373:25:896:-61.6944,0,-104.601	1/1:225:0,225:0:0:225:8031:-722.804,-67.7318,0	1/1:176:2,174:2:72:174:6210:-552.123,-46.1446,0	0/1:347:162,184:162:5772:184:6579:-487.744,0,-415.149	1/1:163:0,163:0:0:163:5852:-526.79,-49.0679,0	1/1:195:0,195:0:0:195:6998:-629.878,-58.7009,0	1/1:229:0,229:0:0:229:8200:-737.881,-68.9359,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:139:66,73:66:2360:73:2597:-192.134,0,-170.816	0/1:105:40,65:40:1436:65:2327:-178.081,0,-97.9295	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:230:115,115:115:4096:115:4102:-300.129,0,-299.588	0/1:129:52,77:52:1853:77:2740:-208.008,0,-128.215	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:70:0,70:0:0:70:2489:-224.262,-21.0721,0	1/1:105:0,105:0:0:105:3757:-338.328,-31.6082,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:195:0,195:0:0:195:6987:-628.892,-58.7009,0	1/1:290:2,288:2:72:288:10249:-915.498,-80.462,0	0/1:63:31,32:31:1097:32:1152:-85.0253,0,-80.0731	1/1:143:0,143:0:0:143:5129:-461.749,-43.0473,0	1/1:331:4,327:4:144:327:11659:-1035.86,-86.3273,0	0/1:106:74,32:74:2664:32:1141:-71.089,0,-208.096	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	1/1:154:0,154:0:0:154:5520:-496.925,-46.3586,0	0/1:96:45,51:45:1616:51:1813:-134.551,0,-116.831	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	1/1:216:0,216:0:0:216:7720:-694.833,-65.0225,0	1/1:93:0,92:0:0:92:3304:-297.218,-27.6948,0	0/1:149:69,80:69:2429:80:2851:-211.972,0,-174.009	0/1:181:94,87:94:3357:87:3132:-227.618,0,-247.859	0/1:128:70,58:70:2482:58:2042:-145.517,0,-185.099	1/1:117:0,117:0:0:117:4170:-375.482,-35.2205,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:227:0,227:0:0:227:8125:-731.262,-68.3338,0	1/1:124:0,124:0:0:124:4456:-401.209,-37.3277,0	1/1:354:0,354:0:0:354:12648:-1138.14,-106.565,0	1/1:100:0,100:0:0:100:3566:-321.146,-30.103,0	0/1:79:35,44:35:1252:44:1580:-118.71,0,-89.2037	0/1:117:54,63:54:1928:63:2245:-167.091,0,-138.576	0/1:192:90,102:90:3228:102:3652:-271.086,0,-232.944	0/1:58:27,31:27:972:31:1099:-81.7605,0,-70.3382	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	1/1:73:0,73:0:0:73:2591:-233.437,-21.9752,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:65:37,28:37:1324:28:1004:-71.1089,0,-99.8951	0/1:97:65,32:65:2324:32:1129:-72.7164,0,-180.22	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:167:0,167:0:0:167:5981:-538.394,-50.272,0
chr07	25643404	.	G	A	33899.5	PASS	AB=0.455914;ABP=80.3606;AC=47;AF=0.25;AN=188;AO=2106;CIGAR=1X;DP=9353;DPB=9353;DPRA=0.973738;EPP=4567.45;EPPR=15676.7;GTI=1;LEN=1;MEANALT=1.05172;MQM=59.9896;MQMR=59.9899;NS=94;NUMALT=1;ODDS=0.547367;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75172;QR=258882;RO=7242;RPL=2106;RPP=4576.13;RPPR=15694.1;RPR=0;RUN=1;SAF=1;SAP=4567.45;SAR=2105;SRF=2;SRP=15711.4;SRR=7240;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:101:55,46:55:1972:46:1656:-118.924,0,-147.351	0/1:88:44,44:44:1580:44:1584:-116.361,0,-116.001	0/1:154:104,50:104:3712:50:1768:-113.042,0,-287.924	0/0:190:190,0:190:6781:0:0:0,-57.1957,-610.363	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/1:65:32,33:32:1148:33:1184:-87.3014,0,-84.0629	0/0:133:132,1:132:4736:1:36:0,-36.4387,-422.798	0/1:128:94,34:94:3364:34:1190:-68.8692,0,-264.445	0/1:79:49,30:49:1752:30:1076:-73.3715,0,-134.024	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/1:134:66,68:66:2350:68:2435:-179.067,0,-171.42	0/1:113:60,53:60:2123:53:1900:-137.262,0,-157.322	0/1:67:31,36:31:1107:36:1280:-95.3342,0,-79.7711	0/1:96:45,51:45:1594:51:1828:-135.902,0,-114.85	0/0:91:90,1:90:3215:1:36:0,-23.7955,-285.974	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:42:41,1:41:1468:1:36:0,-9.04498,-128.818	0/0:57:56,1:56:2003:1:36:0,-13.5604,-176.945	0/1:203:140,63:140:4999:63:2252:-141.834,0,-388.949	0/1:262:147,115:147:5280:115:4105:-290.765,0,-396.464	0/0:124:121,2:121:4332:2:72:0,-30.5498,-383.219	0/1:162:85,77:85:3035:77:2718:-196.093,0,-224.613	0/0:112:112,0:112:3999:0:0:0,-33.7154,-360.1	0/1:67:24,43:24:856:43:1506:-115.661,0,-57.1921	0/1:216:120,96:120:4272:96:3426:-243.529,0,-319.638	0/0:235:235,0:235:8404:0:0:0,-70.742,-756.366	0/1:53:24,29:24:860:29:1036:-77.5993,0,-61.7672	0/0:213:213,0:213:7624:0:0:0,-64.1194,-686.197	0/0:83:83,0:83:2975:0:0:0,-24.9855,-267.982	0/0:134:133,1:133:4756:1:36:0,-36.7397,-424.6	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:274:274,0:274:9794:0:0:0,-82.4822,-881.407	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/1:76:45,31:45:1594:31:1112:-77.5131,0,-120.87	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:82:62,20:62:2220:20:720:-40.4443,0,-175.38	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/1:153:102,51:102:3639:51:1813:-117.392,0,-281.658	0/1:77:37,39:37:1328:39:1396:-102.701,0,-96.5842	0/1:91:42,49:42:1478:49:1764:-131.65,0,-105.919	0/0:91:91,0:91:3251:0:0:0,-27.3937,-292.811	0/0:95:94,1:94:3349:1:21:0,-26.4979,-299.526	0/1:127:74,53:74:2640:53:1885:-131.696,0,-199.616	0/0:107:107,0:107:3816:0:0:0,-32.2102,-343.266	0/0:76:73,3:73:2611:3:108:0,-12.8031,-225.162	0/0:169:169,0:169:6060:0:0:0,-50.8741,-545.502	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:129:74,55:74:2656:55:1976:-139.282,0,-200.453	0/1:71:32,39:32:1148:39:1400:-104.926,0,-82.2567	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:135:61,74:61:2180:74:2640:-197.208,0,-155.827	0/1:84:58,26:58:2072:26:936:-59.2729,0,-161.464	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:85:85,0:85:3027:0:0:0,-25.5875,-272.661	0/0:96:96,0:96:3426:0:0:0,-28.8989,-308.553	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:116:116,0:116:4168:0:0:0,-34.9195,-375.301	0/0:182:178,4:178:6364:4:144:0,-41.4738,-559.538	0/1:83:56,27:56:2000:27:968:-62.4519,0,-155.288	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:201:201,0:201:7188:0:0:0,-60.507,-646.977	0/1:195:93,101:93:3332:101:3608:-266.167,0,-241.338	0/1:46:19,27:19:675:27:968:-73.59,0,-47.2296	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.14	0/1:67:33,34:33:1162:34:1216:-89.5776,0,-84.7163	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/0:141:140,0:140:5000:0:0:0,-42.1442,-449.789	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.709	0/1:183:74,109:74:2644:109:3838:-290.527,0,-183.118	0/1:146:84,62:84:3004:62:2212:-155.392,0,-226.641	0/1:107:63,44:63:2255:44:1584:-110.641,0,-171.002	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:88:87,1:87:3124:1:36:0,-22.8924,-277.787	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:223:222,0:222:7952:0:0:0,-66.8287,-715.343	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.735	0/1:85:43,42:43:1536:42:1508:-110.427,0,-112.946	0/1:115:65,50:65:2336:50:1792:-126.944,0,-175.881	0/1:193:105,88:105:3740:88:3156:-226.166,0,-278.701	0/1:46:18,28:18:648:28:1004:-76.8285,0,-44.8045	0/0:108:107,1:107:3814:1:36:0,-28.913,-339.859	0/0:100:100,0:100:3566:0:0:0,-30.103,-321.018	0/1:31:10,21:10:360:21:756:-58.8773,0,-23.4124	0/1:105:49,56:49:1756:56:1984:-147.224,0,-126.716	0/1:104:35,69:35:1238:69:2463:-190.617,0,-80.4157	0/0:107:107,0:107:3831:0:0:0,-32.2102,-344.986	0/0:179:179,0:179:6393:0:0:0,-53.8844,-575.459
chr07	25652066	.	ATA	GTA,GTC	86313.5	PASS	AB=0.457143,0.539221;ABP=33.7211,28.7307;AC=142,46;AF=0.755319,0.244681;AN=188;AO=2993,1046;CIGAR=1X2M,1X1M1X;DP=4048;DPB=4048;DPRA=43.5161,1.10624;EPP=6502.23,2274.37;EPPR=5.18177;GTI=1;LEN=1,3;MEANALT=1.5914,2.125;MQM=55.0461,59.5765;MQMR=60;NS=94;NUMALT=2;ODDS=1.45872;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=107022,36799;QR=33;RO=1;RPL=0,0;RPP=6502.23,2274.37;RPPR=5.18177;RPR=2993,1046;RUN=1,1;SAF=2993,1046;SAP=6502.23,2274.37;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,11,19:0:0:11,19:396,672:-87.2095,-55.0836,-51.7722,-32.4823,0,-26.7627	1/2:58:0,20,38:0:0:20,38:712,1323:-165.282,-107.926,-101.905,-57.7068,0,-46.2677	1/2:65:0,30,35:0:0:30,35:1068,1242:-188.044,-101.547,-92.5166,-86.851,0,-76.315	1/1:49:0,49,0:0:0:49,0:1756,0:-158.241,-14.7505,0,-158.241,-14.7505,-158.241	1/1:23:0,23,0:0:0:23,0:828,0:-74.5521,-6.92369,0,-74.5521,-6.92369,-74.5521	1/1:19:0,19,0:0:0:19,0:684,0:-61.6365,-5.71957,0,-61.6365,-5.71957,-61.6365	1/2:66:0,34,32:0:0:34,32:1220,1148:-193.449,-93.9971,-83.7621,-99.8105,0,-90.1776	1/1:75:0,75,0:0:0:75,0:2680,0:-240.505,-22.5773,0,-240.505,-22.5773,-240.505	1/2:44:0,21,23:0:0:21,23:756,796:-126.325,-65.0317,-58.7101,-61.6452,0,-54.7215	1/2:20:0,11,9:0:0:11,9:396,322:-58.9123,-26.6149,-23.3036,-32.6559,0,-29.9466	1/1:19:0,19,0:0:0:19,0:669,0:-60.2048,-5.71957,0,-60.2048,-5.71957,-60.2048	1/2:32:0,9,23:0:0:9,23:324,811:-92.524,-66.1502,-63.4409,-26.7306,0,-19.807	1/2:27:0,11,16:0:0:11,16:392,574:-78.8566,-47.1778,-43.8665,-32.0343,0,-27.2178	1/2:34:0,14,20:0:0:14,20:500,697:-97.5157,-57.0312,-52.8168,-40.8366,0,-34.816	1/2:22:0,13,9:0:0:13,9:468,316:-64.1315,-26.0686,-22.1553,-38.417,0,-35.7077	1/1:16:0,16,0:0:0:16,0:576,0:-52.101,-4.81648,0,-52.101,-4.81648,-52.101	1/1:17:0,17,0:0:0:17,0:604,0:-54.3032,-5.11751,0,-54.3032,-5.11751,-54.3032	1/1:14:0,13,1:0:0:13,1:464,36:-41.637,-3.91339,0,-38.7075,-0.625192,-38.4064	1/1:16:0,16,0:0:0:16,0:568,0:-51.2359,-4.81648,0,-51.2359,-4.81648,-51.2359	1/2:62:0,18,44:0:0:18,44:648,1557:-179.972,-127.173,-121.755,-53.1569,0,-39.9115	1/2:35:0,19,16:0:0:19,16:684,570:-102.537,-46.8119,-41.0923,-56.083,0,-51.2665	1/1:45:0,45,0:0:0:45,0:1608,0:-144.919,-13.5464,0,-144.919,-13.5464,-144.919	1/2:38:0,16,22:0:0:16,22:568,780:-109.913,-63.8977,-59.0812,-46.3686,0,-39.746	1/1:63:0,58,5:0:0:58,5:2080,180:-186.698,-17.4597,0,-172.011,-2.41283,-170.505	1/2:36:0,24,12:0:0:24,12:839,410:-101.717,-33.562,-26.3373,-68.4989,0,-64.8865	1/2:209:0,112,95:0:0:112,95:4015,3350:-600.002,-272.795,-239.08,-327.256,0,-298.658	1/1:88:0,88,0:0:0:88,0:3140,0:-282.15,-26.4906,0,-282.15,-26.4906,-282.15	1/2:11:0,5,6:0:0:5,6:180,216:-32.6495,-17.9843,-16.4792,-15.0247,0,-13.2185	1/1:101:0,101,0:0:0:101,0:3624,0:-326.14,-30.404,0,-326.14,-30.404,-326.14	1/1:73:0,73,0:0:0:73,0:2628,0:-236.258,-21.9752,0,-236.258,-21.9752,-236.258	1/1:58:0,58,0:0:0:58,0:2066,0:-185.755,-17.4597,0,-185.755,-17.4597,-185.755	1/1:8:0,8,0:0:0:8,0:284,0:-25.8689,-2.40824,0,-25.8689,-2.40824,-25.8689	1/1:14:0,14,0:0:0:14,0:504,0:-45.6333,-4.21442,0,-45.6333,-4.21442,-45.6333	1/2:2:0,1,1:0:0:1,1:36,36:-6.22607,-3.29724,-2.99621,-3.2882,0,-2.98717	1/1:2:0,2,0:0:0:2,0:72,0:-6.79824,-0.60206,0,-6.79824,-0.60206,-6.79824	1/2:10:0,4,6:0:0:4,6:144,210:-29.1557,-17.4349,-16.2308,-12.076,0,-10.2698	1/1:82:0,82,0:0:0:82,0:2908,0:-261.55,-24.6845,0,-261.55,-24.6845,-261.55	1/1:97:0,96,0:0:0:96,0:3430,0:-308.143,-28.8989,0,-308.143,-28.8989,-308.143	1/2:14:0,10,4:0:0:10,4:352,142:-40.2403,-11.9251,-8.91479,-28.6681,0,-27.464	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:40:0,18,22:0:0:18,22:644,789:-117.124,-64.6898,-59.2712,-52.7917,0,-46.169	1/1:9:0,9,0:0:0:9,0:320,0:-29.0589,-2.70927,0,-29.0589,-2.70927,-29.0589	1/2:69:0,36,33:0:0:36,33:1280,1163:-198.842,-95.0364,-84.1993,-104.158,0,-94.2243	1/2:19:0,10,9:0:0:10,9:360,308:-54.6387,-25.3391,-22.3288,-29.6497,0,-26.9404	1/2:19:0,8,10:0:0:8,10:288,343:-51.3247,-27.8313,-25.423,-23.4871,0,-20.4768	1/1:49:1,48,0:1:33:48,0:1724,0:-152.1,-11.4513,0,-152.401,-14.4494,-155.068	1/1:43:0,43,0:0:0:43,0:1525,0:-137.019,-12.9443,0,-137.019,-12.9443,-137.019	1/2:96:0,29,66:0:0:29,66:1044,2298:-271.347,-186.358,-177.628,-84.9852,0,-65.1173	1/1:38:0,38,0:0:0:38,0:1364,0:-122.96,-11.4391,0,-122.96,-11.4391,-122.96	1/1:45:0,45,0:0:0:45,0:1606,0:-144.196,-13.5464,0,-144.196,-13.5464,-144.196	1/1:82:0,82,0:0:0:82,0:2944,0:-265.134,-24.6845,0,-265.134,-24.6845,-265.134	1/2:9:0,3,6:0:0:3,6:108,200:-25.3368,-16.5203,-15.6172,-9.16729,0,-7.36111	1/2:113:0,60,53:0:0:60,53:2127,1857:-323.566,-151.447,-133.385,-172.471,0,-156.516	1/2:28:0,11,17:0:0:11,17:396,595:-81.0709,-48.7595,-45.4481,-32.6674,0,-27.5499	1/1:12:0,12,0:0:0:12,0:428,0:-38.7651,-3.61236,0,-38.7651,-3.61236,-38.7651	1/2:38:0,15,23:0:0:15,23:536,818:-110.645,-67.0134,-62.4979,-43.9882,0,-37.0645	1/2:16:0,8,8:0:0:8,8:288,280:-46.6158,-23.1305,-20.7223,-23.84,0,-21.4317	1/1:3:0,3,0:0:0:3,0:108,0:-10.0739,-0.90309,0,-10.0739,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chr07	25652075	.	G	A	59179.6	PASS	AB=0.45508;ABP=35.7844;AC=142;AF=0.755319;AN=188;AO=2891;CIGAR=1X;DP=3919;DPB=3919;DPRA=42.129;EPP=6280.74;EPPR=2230.94;GTI=1;LEN=1;MEANALT=1.02151;MQM=55.0515;MQMR=59.6306;NS=94;NUMALT=1;ODDS=1.18251;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101985;QR=36729;RO=1026;RPL=0;RPP=6280.74;RPPR=2230.94;RPR=2891;RUN=1;SAF=2891;SAP=6280.74;SAR=0;SRF=1026;SRP=2230.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:19,11:19:680:11:381:-25.4086,0,-52.4949	0/1:55:36,19:36:1296:19:675:-44.0083,0,-100.379	0/1:62:33,29:33:1184:29:1014:-72.4873,0,-88.2045	1/1:45:0,45:0:0:45:1570:-141.52,-13.5464,0	1/1:19:0,19:0:0:19:680:-61.2581,-5.71957,0	1/1:17:0,17:0:0:17:612:-55.1758,-5.11751,0	0/1:64:31,33:31:1101:33:1165:-85.8384,0,-80.1324	1/1:71:0,71:0:0:71:2452:-220.298,-21.3731,0	0/1:43:22,21:22:788:21:748:-54.4929,0,-58.3005	0/1:18:9,9:9:324:9:320:-23.7123,0,-24.0873	1/1:17:0,17:0:0:17:604:-54.3693,-5.11751,0	0/1:32:22,10:22:792:10:341:-21.2958,0,-61.9287	0/1:27:16,11:16:576:11:396:-27.5756,0,-44.0472	0/1:34:20,14:20:716:14:496:-34.2551,0,-54.5327	0/1:20:8,12:8:288:12:432:-33.0728,0,-20.2468	1/1:16:0,16:0:0:16:568:-51.3834,-4.81648,0	1/1:17:0,17:0:0:17:600:-53.7309,-5.11751,0	1/1:14:1,13:1:36:13:453:-37.4116,-0.625192,0	1/1:15:0,15:0:0:15:521:-46.9141,-4.51545,0	0/1:63:44,19:44:1584:19:676:-42.1309,0,-123.884	0/1:35:16,19:16:567:19:680:-50.9081,0,-40.8201	1/1:43:0,43:0:0:43:1524:-137.366,-12.9443,0	0/1:36:22,14:22:784:14:492:-33.5123,0,-60.0445	1/1:59:5,54:5:180:54:1872:-151.826,-1.20871,0	0/1:36:12,24:12:428:24:834:-64.4068,0,-27.8034	0/1:204:96,108:96:3402:108:3823:-282.62,0,-244.963	1/1:85:0,85:0:0:85:2994:-268.882,-25.5876,0	0/1:9:6,3:6:216:3:108:-7.35292,0,-17.0812	1/1:99:0,98:0:0:98:3432:-308.512,-29.5009,0	1/1:69:0,69:0:0:69:2426:-218.122,-20.7711,0	1/1:56:0,56:0:0:56:1955:-175.849,-16.8577,0	1/1:8:0,8:0:0:8:280:-25.5076,-2.40824,0	1/1:14:0,14:0:0:14:500:-45.2742,-4.21442,0	0/1:2:1,1:1:36:1:36:-2.98717,0,-2.99621	1/1:2:0,2:0:0:2:72:-6.79824,-0.60206,0	0/1:8:6,2:6:216:2:68:-4.03742,0,-17.3799	1/1:76:0,76:0:0:76:2705:-242.706,-22.8783,0	1/1:97:0,97:0:0:97:3421:-307.488,-29.1999,0	0/1:12:3,9:3:108:9:320:-25.469,0,-6.46281	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:40:22,18:22:788:18:632:-45.0935,0,-59.1751	1/1:9:0,9:0:0:9:324:-29.3615,-2.70927,0	0/1:67:33,34:33:1173:34:1149:-82.9184,0,-85.7019	0/1:19:9,10:9:324:10:348:-25.8541,0,-23.7839	0/1:19:11,8:11:387:8:288:-20.5354,0,-29.4416	1/1:47:0,47:0:0:47:1669:-150.466,-14.1484,0	1/1:42:0,42:0:0:42:1470:-132.043,-12.6433,0	0/1:91:63,28:63:2264:28:1008:-63.4443,0,-176.619	1/1:35:0,35:0:0:35:1218:-109.871,-10.5361,0	1/1:43:0,43:0:0:43:1521:-135.955,-12.9443,0	1/1:81:0,81:0:0:81:2906:-261.736,-24.3834,0	0/1:10:6,4:6:212:4:144:-10.2982,0,-16.4145	0/1:108:51,57:51:1832:57:1983:-144.778,0,-132.637	0/1:27:16,11:16:572:11:388:-27.1141,0,-43.6856	1/1:11:0,11:0:0:11:392:-35.5345,-3.31133,0	0/1:38:23,15:23:828:15:525:-36.0783,0,-63.4004	0/1:14:6,8:6:212:8:284:-21.6707,0,-15.2104	1/1:3:0,3:0:0:3:104:-9.70181,-0.90309,0	1/1:11:0,11:0:0:11:393:-35.6386,-3.31133,0	1/1:51:0,51:0:0:51:1820:-163.371,-15.3525,0	1/1:73:0,73:0:0:73:2600:-232.851,-21.9752,0	1/1:1:0,1:0:0:1:36:-3.59656,-0.30103,0	1/1:67:0,67:0:0:67:2330:-209.847,-20.169,0	1/1:163:1,162:1:36:162:5709:-509.74,-45.4696,0	0/1:21:13,8:13:468:8:288:-19.9085,0,-35.8664	1/1:36:0,36:0:0:36:1261:-113.673,-10.8371,0	1/1:104:0,104:0:0:104:3682:-329.855,-31.3071,0	0/1:70:42,28:42:1512:28:970:-65.5594,0,-115.296	0/1:6:3,3:3:108:3:108:-8.2547,0,-8.26899	1/1:29:0,29:0:0:29:1044:-94.0378,-8.72987,0	0/1:65:33,31:33:1171:31:1082:-77.9638,0,-86.0708	0/1:14:9,5:9:320:5:180:-12.3298,0,-24.9279	1/1:11:0,11:0:0:11:396:-35.8018,-3.31133,0	1/1:20:0,20:0:0:20:704:-62.0823,-6.0206,0	0/1:123:62,61:62:2224:61:2172:-157.919,0,-163.379	0/1:66:40,26:40:1436:26:896:-61.0491,0,-109.665	0/1:87:41,46:41:1476:46:1632:-120.278,0,-106.93	1/1:30:0,30:0:0:30:1042:-93.5857,-9.0309,0	1/1:4:0,4:0:0:4:144:-13.2744,-1.20412,0	1/1:51:0,51:0:0:51:1817:-163.156,-15.3525,0	1/1:16:0,16:0:0:16:557:-50.3316,-4.81648,0	1/1:92:0,92:0:0:92:3250:-292.546,-27.6948,0	1/1:75:0,75:0:0:75:2653:-238.682,-22.5773,0	0/1:16:8,8:8:288:8:284:-21.0753,0,-21.4486	0/1:26:19,7:19:676:7:244:-14.4345,0,-53.2266	0/1:47:26,21:26:928:21:756:-54.1195,0,-69.6852	0/1:28:16,12:16:576:12:420:-29.6213,0,-43.547	1/1:28:0,28:0:0:28:988:-89.0295,-8.42884,0	1/1:23:0,23:0:0:23:824:-73.7612,-6.92369,0	0/1:5:2,3:2:72:3:108:-8.55205,0,-5.33157	0/1:50:23,27:23:828:27:968:-72.2641,0,-59.788	0/1:23:19,4:19:680:4:144:-6.3836,0,-54.6022	1/1:35:0,35:0:0:35:1244:-112.213,-10.5361,0	1/1:18:0,18:0:0:18:640:-57.9033,-5.41854,0
chr07	25652112	.	T	C	17000.8	PASS	AB=0.541114;ABP=30.6865;AC=46;AF=0.244681;AN=188;AO=1028;CIGAR=1X;DP=3985;DPB=3985;DPRA=1.09708;EPP=2235.28;EPPR=6424.05;GTI=1;LEN=1;MEANALT=1;MQM=59.6245;MQMR=55.1589;NS=94;NUMALT=1;ODDS=1.60171;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36317;QR=105214;RO=2957;RPL=1028;RPP=2235.28;RPPR=6424.05;RPR=0;RUN=1;SAF=1028;SAP=2235.28;SAR=0;SRF=2957;SRP=6424.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:11,19:11:392:19:676:-52.1337,0,-26.4049	0/1:55:20,35:20:720:35:1248:-96.0649,0,-47.8831	0/1:65:30,35:30:1052:35:1260:-94.1385,0,-74.7777	0/0:48:48,0:48:1698:0:0:0,-14.4494,-153.027	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.5423	0/0:19:19,0:19:676:0:0:0,-5.71957,-60.924	0/1:64:32,32:32:1131:32:1140:-83.6433,0,-82.7826	0/0:74:74,0:74:2619:0:0:0,-22.2762,-235.048	0/1:45:22,23:22:788:23:800:-58.769,0,-57.2949	0/1:20:11,9:11:378:9:324:-23.4853,0,-28.3157	0/0:20:20,0:20:708:0:0:0,-6.0206,-63.8396	0/1:31:9,22:9:324:22:792:-62.2297,0,-20.0801	0/1:26:11,15:11:392:15:532:-40.3863,0,-27.5222	0/1:33:13,20:13:459:20:690:-52.4853,0,-31.655	0/1:21:12,9:12:424:9:324:-23.1819,0,-32.0488	0/0:15:15,0:15:523:0:0:0,-4.51545,-47.3387	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.0602	0/0:14:13,1:13:459:1:36:0,-0.625191,-37.9553	0/0:15:15,0:15:531:0:0:0,-4.51545,-47.9968	0/1:62:18,44:18:644:44:1563:-122.295,0,-39.5938	0/1:35:19,16:19:684:16:572:-41.2728,0,-51.2665	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.803	0/1:37:15,22:15:540:22:780:-59.3826,0,-37.688	0/0:63:58,5:58:2054:5:180:0,-2.41282,-168.132	0/1:36:24,12:24:851:12:400:-25.4289,0,-65.941	0/1:205:109,96:109:3872:96:3376:-242.318,0,-286.777	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.029	0/1:11:5,6:5:176:6:212:-16.1135,0,-12.8543	0/0:99:99,0:99:3530:0:0:0,-29.802,-317.627	0/0:75:75,0:75:2662:0:0:0,-22.5772,-239.332	0/0:59:59,0:59:2077:0:0:0,-17.7608,-186.39	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2302	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6333	0/1:2:1,1:1:32:1:32:-2.59725,0,-2.59362	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.79824	0/1:9:4,5:4:144:5:171:-13.0162,0,-10.5709	0/0:79:79,0:79:2812:0:0:0,-23.7814,-253.188	0/0:96:96,0:96:3412:0:0:0,-28.8989,-306.685	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8276	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:39:18,21:18:633:21:729:-54.1595,0,-45.4762	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2302	0/1:67:34,33:34:1211:33:1169:-85.3417,0,-88.7226	0/1:20:11,9:11:396:9:320:-23.1194,0,-29.8764	0/1:19:8,11:8:288:11:379:-28.7163,0,-20.5354	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.66	0/0:45:45,0:45:1611:0:0:0,-13.5463,-144.502	0/1:91:28,63:28:995:63:2244:-174.632,0,-62.2742	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.342	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.105	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.143	0/1:10:4,6:4:129:6:192:-14.5831,0,-8.9126	0/1:110:58,52:58:2050:52:1839:-132.668,0,-150.818	0/1:28:11,17:11:392:17:603:-46.1698,0,-27.1592	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.7651	0/1:38:15,23:15:540:23:810:-61.7753,0,-37.4235	0/1:16:8,8:8:288:8:279:-20.6311,0,-21.4317	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0739	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1268	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.172	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.359	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.526	0/0:164:163,1:163:5747:1:36:0,-45.7706,-513.166	0/1:23:9,14:9:324:14:477:-36.2828,0,-22.5403	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.529	0/0:107:107,0:107:3797:0:0:0,-32.2102,-341.553	0/1:68:29,39:29:1036:39:1373:-103.394,0,-73.0409	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.2547	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.8075	0/1:66:32,34:32:1140:34:1193:-87.8039,0,-82.9459	0/1:15:6,9:6:216:9:311:-23.8083,0,-15.1964	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.4441	0/0:19:19,0:19:684:0:0:0,-5.71957,-60.2762	0/1:122:61,61:61:2183:61:2149:-156.934,0,-159.197	0/1:65:25,40:25:883:40:1420:-108.526,0,-60.1851	0/1:87:46,41:46:1648:41:1464:-105.85,0,-121.648	0/0:30:30,0:30:1080:0:0:0,-9.0309,-96.9879	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2744	0/0:51:51,0:51:1824:0:0:0,-15.3525,-163.819	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.2685	0/0:98:98,0:98:3472:0:0:0,-29.5009,-312.465	0/0:76:76,0:76:2706:0:0:0,-22.8783,-243.432	0/1:16:8,8:8:276:8:288:-21.4486,0,-20.3491	0/1:26:8,18:8:275:18:642:-50.2522,0,-17.1791	0/1:45:20,25:20:701:25:881:-66.0595,0,-49.8096	0/1:29:13,16:13:468:16:572:-42.9878,0,-33.623	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.0378	0/0:27:27,0:27:964:0:0:0,-8.12781,-86.1452	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.55205	0/1:51:28,23:28:995:23:824:-59.1262,0,-74.3778	0/1:24:4,20:4:140:20:691:-55.2807,0,-5.71448	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.65	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6661
chr07	25654029	.	A	G	23310.3	PASS	AB=0.542811;ABP=42.4266;AC=44;AF=0.244444;AN=180;AO=1348;CIGAR=1X;DP=5086;DPB=5086;DPRA=0.992135;EPP=2835.39;EPPR=7634.34;GTI=0;LEN=1;MEANALT=1.04255;MQM=53.6261;MQMR=59.9202;NS=90;NUMALT=1;ODDS=2.09402;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48026;QR=133596;RO=3735;RPL=11;RPP=2835.39;RPPR=7634.34;RPR=1337;RUN=1;SAF=1348;SAP=2930.16;SAR=0;SRF=3735;SRP=8113.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:19,23:19:676:23:824:-61.1952,0,-48.5243	0/1:43:19,24:19:676:24:860:-64.5805,0,-48.2237	0/1:84:30,54:30:1076:54:1936:-148.424,0,-71.8663	0/0:134:134,0:134:4816:0:0:0,-40.338,-433.593	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:29:14,15:14:504:15:540:-40.0005,0,-36.9659	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.795	0/1:64:26,38:26:936:38:1360:-101.817,0,-65.2935	0/1:57:29,28:29:1032:28:995:-72.2837,0,-76.0324	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.894	0/1:92:43,49:43:1544:49:1748:-129.529,0,-111.554	0/1:57:31,26:31:1116:26:932:-66.5171,0,-83.593	0/1:48:23,25:23:824:25:887:-65.2105,0,-60.0257	0/1:58:25,33:25:891:33:1188:-89.5219,0,-63.049	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.081	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.329	0/0:35:34,1:34:1220:1:36:0,-6.94682,-106.518	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:112:45,67:45:1620:67:2382:-180.595,0,-112.375	0/1:92:38,53:38:1360:53:1883:-141.623,0,-94.943	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:52:23,29:23:828:29:1024:-76.3827,0,-59.1906	0/0:39:38,1:38:1352:1:36:0,-8.147,-118.387	0/1:48:33,15:33:1176:15:537:-34.0346,0,-91.6983	0/1:113:52,61:52:1860:61:2188:-162.819,0,-133.663	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/1:32:22,10:22:788:10:347:-21.8911,0,-61.6118	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/0:99:99,0:99:3510:0:0:0,-29.802,-316.091	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:6:2,4:2:72:4:144:-11.474,0,-5.03054	0/1:11:5,6:5:176:6:216:-16.4294,0,-12.8737	0/1:5:1,4:1:36:4:135:-10.9512,0,-2.09312	0/0:168:168,0:168:6013:0:0:0,-50.573,-541.273	0/0:45:45,0:45:1589:0:0:0,-13.5463,-143.298	0/1:38:17,21:17:608:21:743:-54.5582,0,-43.6129	.:.:.:.:.:.:.:.	0/1:108:56,52:56:1993:52:1868:-135.5,0,-147.131	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:73:24,49:24:860:49:1748:-135.152,0,-55.7466	0/1:37:14,23:14:504:23:814:-62.3219,0,-34.5374	0/1:44:19,25:19:672:25:870:-65.2816,0,-47.5615	0/0:63:63,0:63:2256:0:0:0,-18.9649,-202.813	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.427	0/1:69:22,47:22:788:47:1680:-130.334,0,-50.4714	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.153	.:.:.:.:.:.:.:.	0/1:81:40,41:40:1440:41:1464:-107.081,0,-105.514	0/1:52:20,32:20:720:32:1126:-85.7364,0,-49.4752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:79:37,42:37:1311:42:1494:-110.417,0,-94.5095	0/1:27:9,18:9:316:18:648:-49.5711,0,-20.651	.:.:.:.:.:.:.:.	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3565	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.26	.:.:.:.:.:.:.:.	0/0:140:139,0:139:4957:0:0:0,-41.8432,-445.722	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.772	0/1:36:18,18:18:648:18:648:-47.4626,0,-47.8144	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.666	0/0:96:94,2:94:3372:2:72:0,-22.0732,-296.865	0/1:109:35,74:35:1222:74:2638:-204.229,0,-77.4673	0/1:20:15,5:15:525:5:180:-10.508,0,-41.5575	0/0:17:17,0:17:592:0:0:0,-5.11751,-53.6064	0/1:51:24,27:24:860:27:950:-69.5353,0,-62.3693	0/1:9:3,5:3:104:5:180:-13.6871,0,-6.93826	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.106	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:50:27,23:27:968:23:820:-58.8011,0,-72.3859	0/1:154:67,87:67:2400:87:3098:-232.175,0,-169.898	0/1:18:14,4:14:500:4:140:-7.47684,0,-39.9176	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.747	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:57:26,31:26:936:31:1116:-83.5021,0,-67.4008	0/1:40:21,19:21:752:19:671:-48.491,0,-55.9651	0/1:113:55,58:55:1976:58:2037:-148.931,0,-144.098	0/1:30:17,13:17:608:13:464:-32.937,0,-46.0211	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.215	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.579	0/1:20:15,5:15:532:5:180:-10.508,0,-42.1925	0/1:68:37,31:37:1320:31:1107:-78.8423,0,-98.6301	0/1:48:18,30:18:648:30:1072:-82.0137,0,-44.2024	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.987	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809
chr07	25654046	.	G	C	78184.9	PASS	AB=0.456765;ABP=43.5676;AC=136;AF=0.755556;AN=180;AO=3763;CIGAR=1X;DP=5125;DPB=5125;DPRA=0;EPP=8174.26;EPPR=2958.38;GTI=0;LEN=1;MEANALT=1.01111;MQM=59.9211;MQMR=53.5665;NS=90;NUMALT=1;ODDS=2.00852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133587;QR=48445;RO=1361;RPL=3763;RPP=8174.26;RPPR=2949.7;RPR=0;RUN=1;SAF=3763;SAP=8174.26;SAR=0;SRF=1360;SRP=2949.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:23,17:23:816:17:597:-42.0149,0,-60.9578	0/1:43:24,19:24:860:19:680:-48.5849,0,-64.5805	0/1:90:58,32:58:2075:32:1148:-76.5371,0,-158.666	1/1:140:0,140:0:0:140:4971:-447.54,-42.1442,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:20:0,20:0:0:20:711:-64.3156,-6.0206,0	0/1:30:15,15:15:531:15:536:-39.5416,0,-38.8889	1/1:62:0,62:0:0:62:2209:-199.075,-18.6639,0	0/1:65:38,27:38:1345:27:957:-66.8769,0,-99.3358	0/1:57:29,28:29:1027:28:1000:-73.1567,0,-75.2124	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	0/1:91:49,42:49:1756:42:1481:-106.184,0,-130.54	0/1:57:26,31:26:932:31:1106:-82.6914,0,-66.3856	0/1:48:25,23:25:892:23:814:-59.1298,0,-65.6055	0/1:60:34,26:34:1220:26:927:-65.6856,0,-91.7985	1/1:50:0,50:0:0:50:1758:-158.502,-15.0515,0	1/1:35:0,35:0:0:35:1251:-112.878,-10.5361,0	1/1:33:1,32:1:36:32:1152:-100.401,-6.34476,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:114:68,46:68:2419:46:1623:-112.041,0,-183.407	0/1:90:52,38:52:1864:38:1341:-93.8958,0,-140.57	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	0/1:48:25,23:25:900:23:828:-60.3947,0,-66.7266	1/1:40:1,39:1:36:39:1379:-120.815,-8.44803,0	0/1:50:16,34:16:572:34:1220:-95.0553,0,-36.6778	0/1:114:62,52:62:2185:52:1864:-133.722,0,-162.292	1/1:118:0,118:0:0:118:4197:-377.91,-35.5215,0	0/1:32:10,22:10:356:22:784:-61.251,0,-22.7046	1/1:105:0,105:0:0:105:3696:-332.841,-31.6082,0	1/1:95:0,95:0:0:95:3362:-302.786,-28.5979,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:6:4,2:4:135:2:72:-5.03054,0,-10.6502	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.3697	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.775	1/1:165:0,165:0:0:165:5840:-525.714,-49.67,0	1/1:45:0,45:0:0:45:1595:-143.84,-13.5464,0	0/1:38:21,17:21:744:17:599:-42.799,0,-54.9607	.:.:.:.:.:.:.:.	0/1:110:52,58:52:1849:58:2049:-151.567,0,-133.208	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:76:52,24:52:1843:24:864:-55.1997,0,-142.899	0/1:38:24,14:24:864:14:498:-33.6933,0,-65.7725	0/1:41:22,19:22:768:19:608:-42.6802,0,-57.0235	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:36:0,36:0:0:36:1292:-116.582,-10.8371,0	0/1:68:47,21:47:1647:21:756:-47.8948,0,-127.827	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:60:0,60:0:0:60:2113:-190.436,-18.0618,0	1/1:67:0,67:0:0:67:2386:-214.991,-20.169,0	.:.:.:.:.:.:.:.	0/1:80:41,39:41:1460:39:1396:-101.857,0,-106.929	0/1:52:32,20:32:1144:20:705:-48.1192,0,-86.8083	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:79:42,37:42:1479:37:1292:-92.7954,0,-109.185	0/1:29:20,9:20:712:9:309:-19.4108,0,-54.794	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	1/1:23:0,23:0:0:23:820:-74.1212,-6.92369,0	1/1:85:0,85:0:0:85:3040:-273.826,-25.5876,0	.:.:.:.:.:.:.:.	1/1:143:0,143:0:0:143:5096:-458.763,-43.0473,0	1/1:72:0,72:0:0:72:2550:-229.75,-21.6742,0	0/1:37:18,19:18:648:19:665:-49.0343,0,-47.1616	1/1:34:0,34:0:0:34:1188:-107.217,-10.235,0	1/1:95:2,93:2:68:93:3273:-288.339,-22.1461,0	0/1:111:76,35:76:2724:35:1241:-78.5782,0,-211.207	0/1:20:5,15:5:176:15:530:-42.0114,0,-10.1438	1/1:19:0,19:0:0:19:642:-58.0941,-5.71957,0	0/1:51:28,23:28:1004:23:824:-59.1308,0,-74.3528	0/1:9:6,3:6:216:3:104:-6.99354,0,-16.9817	1/1:73:0,73:0:0:73:2581:-231.982,-21.9752,0	1/1:61:0,61:0:0:61:2162:-194.846,-18.3628,0	0/1:56:25,31:25:896:31:1084:-81.0084,0,-63.0662	0/1:155:88,67:88:3144:67:2412:-170.676,0,-236.063	0/1:17:4,13:4:144:13:464:-36.98,0,-8.1419	1/1:58:0,58:0:0:58:2075:-187.012,-17.4597,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:49:0,49:0:0:49:1747:-157.514,-14.7505,0	1/1:49:0,49:0:0:49:1719:-154.992,-14.7505,0	1/1:93:0,92:0:0:92:3258:-293.08,-27.6948,0	1/1:57:0,57:0:0:57:2013:-181.318,-17.1587,0	0/1:57:31,26:31:1108:26:924:-66.3184,0,-82.7842	0/1:41:20,21:20:712:21:752:-55.664,0,-51.8707	0/1:118:60,58:60:2140:58:2035:-147.898,0,-156.006	0/1:31:12,19:12:424:19:680:-52.1939,0,-29.0642	1/1:56:0,56:0:0:56:1995:-179.807,-16.8577,0	1/1:60:0,60:0:0:60:2147:-193.489,-18.0618,0	0/1:19:4,15:4:144:15:532:-42.4935,0,-7.57517	0/1:67:30,37:30:1064:37:1310:-98.0311,0,-75.5435	0/1:48:29,19:29:1010:19:676:-46.7186,0,-76.4323	1/1:92:0,92:0:0:92:3256:-293.26,-27.6948,0	1/1:73:0,73:0:0:73:2611:-235.237,-21.9752,0
chr07	25654137	.	A	C	30031.4	PASS	AB=0.527795;ABP=24.9797;AC=50;AF=0.268817;AN=186;AO=1764;CIGAR=1X;DP=6793;DPB=6793;DPRA=1.15754;EPP=3824.81;EPPR=10838.8;GTI=0;LEN=1;MEANALT=1.01754;MQM=59.9688;MQMR=59.9712;NS=93;NUMALT=1;ODDS=1.89458;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63086;QR=180073;RO=5026;RPL=1763;RPP=3824.81;RPPR=10847.5;RPR=1;RUN=1;SAF=0;SAP=3833.49;SAR=1764;SRF=1;SRP=10908.1;SRR=5025;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	.:.:.:.:.:.:.:.	0/1:84:37,47:37:1324:47:1675:-125.75,0,-94.1756	0/1:104:43,61:43:1532:61:2194:-166.418,0,-106.866	0/0:109:107,2:107:3839:2:72:0,-25.9755,-337.593	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:71:21,50:21:756:50:1792:-140.189,0,-46.9941	0/0:132:131,1:131:4696:1:36:0,-36.1377,-419.201	0/1:52:17,35:17:612:35:1228:-95.1675,0,-39.7599	0/1:155:78,77:78:2792:77:2762:-202.162,0,-204.861	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.151	0/1:70:27,43:27:955:43:1548:-118.541,0,-65.1928	0/1:66:35,31:35:1260:31:1112:-80.5234,0,-93.8375	0/1:131:74,57:74:2636:57:2023:-142.907,0,-198.053	0/1:74:40,34:40:1440:34:1220:-87.8306,0,-107.622	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.913	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:67:22,45:22:792:45:1608:-124.841,0,-51.4367	0/1:95:53,42:53:1904:42:1504:-107.057,0,-143.04	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/1:74:63,11:63:2264:11:392:-13.3438,0,-181.746	0/1:22:9,13:9:320:13:468:-35.837,0,-22.5197	0/1:211:113,98:113:4047:98:3519:-253.401,0,-300.899	0/0:116:115,1:115:4112:1:36:0,-31.3212,-366.667	0/1:50:23,27:23:824:27:964:-72.0253,0,-59.4318	0/0:115:112,3:112:4008:3:104:0,-24.9156,-351.204	0/0:120:120,0:120:4270:0:0:0,-36.1236,-384.477	0/0:120:119,1:119:4265:1:36:0,-32.5253,-380.322	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:188:188,0:188:6739:0:0:0,-56.5936,-606.582	0/0:152:152,0:152:5438:0:0:0,-45.7566,-489.548	0/1:70:36,34:36:1284:34:1224:-89.3949,0,-94.7913	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:100:52,48:52:1872:48:1724:-125.342,0,-138.656	0/0:44:43,1:43:1544:1:36:0,-9.64704,-135.655	0/1:31:13,18:13:464:18:644:-48.9587,0,-32.7656	0/1:78:32,46:32:1152:46:1652:-125.488,0,-80.5098	0/1:75:36,39:36:1288:39:1404:-104.082,0,-93.6463	0/0:27:26,1:26:891:1:36:0,-4.52953,-76.8984	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/1:89:40,49:40:1421:49:1735:-129.642,0,-101.394	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:181:181,0:181:6496:0:0:0,-54.4864,-584.722	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:87:36,51:36:1287:51:1808:-136.809,0,-89.9432	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:89:36,53:36:1296:53:1897:-144.212,0,-90.1523	0/1:20:7,12:7:252:12:420:-32.1937,0,-17.0807	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:184:182,2:182:6519:2:72:0,-48.5528,-579.528	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:140:139,1:139:4984:1:36:0,-38.5459,-445.109	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.249	0/1:81:48,33:48:1724:33:1173:-81.4892,0,-131.062	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:88:87,0:87:3100:0:0:0,-26.1896,-278.869	0/1:55:20,35:20:720:35:1260:-97.1488,0,-48.5721	0/1:40:15,25:15:540:25:880:-67.4752,0,-36.8953	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.352	0/1:137:59,78:59:2116:78:2795:-210.548,0,-149.464	1/1:18:1,17:1:36:17:603:-51.0012,-1.82027,0	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:81:81,0:81:2885:0:0:0,-24.3834,-259.885	0/1:116:46,70:46:1648:70:2504:-190.693,0,-113.689	0/1:122:47,75:47:1692:75:2684:-205.051,0,-115.841	0/1:40:27,13:27:972:13:468:-30.4184,0,-75.7567	0/0:152:151,0:151:5401:0:0:0,-45.4555,-485.859	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.239	0/0:111:110,1:110:3944:1:32:0,-30.215,-351.952	0/1:65:34,31:34:1220:31:1112:-80.8244,0,-90.5399	0/1:91:46,45:46:1648:45:1608:-117.616,0,-121.215	0/1:147:62,85:62:2224:85:3044:-229.938,0,-156.173	0/1:46:25,21:25:900:21:752:-54.1589,0,-67.0446	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.653	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:56:29,27:29:1044:27:972:-70.9402,0,-77.4171	0/1:165:85,80:85:3045:80:2842:-206.346,0,-224.608	0/1:68:24,44:24:864:44:1580:-122.022,0,-57.6125	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.322
chr07	25655596	.	G	T	102498	PASS	AB=0.470663;ABP=26.5811;AC=139;AF=0.747312;AN=186;AO=4868;CIGAR=1X;DP=6553;DPB=6553;DPRA=0;EPP=10573.7;EPPR=3655.43;GTI=1;LEN=1;MEANALT=1.03226;MQM=55.4834;MQMR=55.2342;NS=93;NUMALT=1;ODDS=3.17788;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174465;QR=60174;RO=1682;RPL=0;RPP=10573.7;RPPR=3655.43;RPR=4868;RUN=1;SAF=4868;SAP=10573.7;SAR=0;SRF=1682;SRP=3655.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:32,20:32:1140:20:720:-49.1221,0,-86.7233	0/1:84:37,47:37:1328:47:1688:-126.104,0,-93.9076	0/1:119:58,61:58:2071:61:2188:-159.733,0,-149.854	1/1:188:0,188:0:0:188:6719:-604.506,-56.5936,0	1/1:53:2,50:2:72:50:1796:-154.803,-9.18585,0	1/1:31:0,31:0:0:31:1108:-99.5058,-9.33193,0	0/1:102:61,41:61:2180:41:1463:-101.219,0,-165.726	1/1:102:0,102:0:0:102:3664:-328.191,-30.7051,0	0/1:92:60,32:60:2139:32:1152:-75.7316,0,-164.074	0/1:75:52,23:52:1849:23:824:-51.8928,0,-144.082	1/1:15:0,15:0:0:15:540:-48.909,-4.51545,0	0/1:26:15,11:15:540:11:392:-27.6088,0,-40.8444	0/1:21:13,8:13:464:8:288:-19.8034,0,-35.5562	0/1:35:19,16:19:676:16:576:-41.565,0,-50.5314	0/1:30:13,17:13:468:17:608:-46.0103,0,-33.4193	1/1:21:0,21:0:0:21:744:-67.1904,-6.32163,0	1/1:17:0,17:0:0:17:612:-55.113,-5.11751,0	1/1:11:0,11:0:0:11:396:-35.7877,-3.31133,0	1/1:15:0,15:0:0:15:532:-47.9688,-4.51545,0	0/1:193:99,94:99:3548:94:3365:-244.899,0,-261.37	0/1:112:68,44:68:2440:44:1584:-108.869,0,-185.728	1/1:116:0,116:0:0:116:4144:-373.1,-34.9195,0	0/1:158:83,75:83:2980:75:2687:-194.37,0,-220.794	0/1:68:8,60:8:288:60:2160:-173.882,0,-5.74697	0/1:70:38,32:38:1368:32:1148:-82.413,0,-102.122	0/1:243:123,120:123:4412:120:4295:-313.468,0,-324.049	1/1:142:0,142:0:0:142:5104:-458.78,-42.7463,0	0/1:9:6,3:6:212:3:108:-7.35161,0,-16.6849	1/1:214:0,214:0:0:214:7667:-689.978,-64.4204,0	1/1:106:0,106:0:0:106:3796:-340.037,-31.9092,0	1/1:123:2,121:2:72:121:4327:-382.706,-30.1908,0	.:.:.:.:.:.:.:.	1/1:9:0,9:0:0:9:324:-29.464,-2.70927,0	0/1:3:2,1:2:72:1:36:-2.67568,0,-5.89657	0/1:4:1,3:1:36:3:108:-8.81643,0,-2.37465	0/1:10:7,3:7:252:3:108:-7.01025,0,-19.8938	1/1:62:0,62:0:0:62:2223:-200.287,-18.6639,0	1/1:154:0,154:0:0:154:5519:-494.716,-46.3586,0	0/1:13:4,9:4:144:9:324:-25.4325,0,-9.32805	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:102:48,54:48:1716:54:1932:-143.154,0,-123.764	1/1:11:0,11:0:0:11:396:-35.9317,-3.31133,0	0/1:117:52,65:52:1864:65:2332:-174.516,0,-132.537	0/1:18:10,8:10:356:8:288:-20.8456,0,-26.9589	0/1:22:10,12:10:360:12:432:-32.5852,0,-26.1133	1/1:92:0,92:0:0:92:3308:-297.892,-27.6948,0	1/1:76:0,76:0:0:76:2732:-244.796,-22.8783,0	0/1:100:29,71:29:1040:71:2548:-199.422,0,-63.7999	1/1:97:0,97:0:0:97:3480:-313.356,-29.1999,0	1/1:92:0,92:0:0:92:3296:-296.809,-27.6948,0	1/1:104:0,104:0:0:104:3732:-336,-31.3071,0	0/1:11:3,8:3:108:8:288:-22.9486,0,-6.73982	0/1:112:38,74:38:1368:74:2648:-203.609,0,-89.0363	0/1:70:35,35:35:1222:35:1252:-91.8774,0,-89.1704	1/1:16:0,16:0:0:16:576:-51.8921,-4.81648,0	0/1:76:42,34:42:1508:34:1224:-87.4191,0,-112.92	0/1:45:20,25:20:716:25:888:-66.6758,0,-51.2093	1/1:4:0,4:0:0:4:144:-13.312,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.55,-1.50515,0	1/1:95:1,94:1:36:94:3380:-300.165,-25.0047,0	1/1:57:1,56:1:36:56:2012:-177.725,-13.5609,0	0/1:4:1,3:1:36:3:108:-8.8698,0,-2.39371	1/1:141:0,141:0:0:141:5064:-455.847,-42.4452,0	1/1:117:2,115:2:72:115:4132:-365.133,-28.3846,0	0/1:53:29,24:29:1029:24:864:-62.0173,0,-76.8373	1/1:50:0,49:0:0:49:1756:-157.97,-14.7505,0	1/1:120:3,117:3:108:117:4208:-368.731,-26.0497,0	0/1:175:125,50:125:4479:50:1792:-108.854,0,-350.513	0/1:9:4,5:4:140:5:180:-13.8193,0,-10.2193	1/1:59:0,59:0:0:59:2124:-190.39,-17.7608,0	0/1:35:21,14:21:756:14:495:-34.3417,0,-57.8227	0/1:10:6,4:6:216:4:144:-10.3017,0,-16.7735	1/1:110:0,110:0:0:110:3940:-352.911,-33.1133,0	1/1:65:0,65:0:0:65:2336:-209.367,-19.567,0	0/1:272:202,70:202:7226:70:2499:-142.947,0,-567.4	0/1:160:65,95:65:2316:95:3403:-258.248,0,-160.47	0/1:56:33,23:33:1171:23:828:-57.5807,0,-88.294	1/1:71:0,71:0:0:71:2548:-228.343,-21.3731,0	1/1:9:0,9:0:0:9:324:-29.3459,-2.70927,0	1/1:120:2,118:2:72:118:4201:-370.838,-29.2966,0	1/1:95:0,95:0:0:95:3380:-302.819,-28.5979,0	1/1:117:0,117:0:0:117:4185:-376.732,-35.2205,0	1/1:47:0,47:0:0:47:1692:-152.531,-14.1484,0	0/1:18:9,9:9:324:9:316:-23.3572,0,-24.0837	0/1:23:11,12:11:396:12:432:-32.2884,0,-29.0324	0/1:53:27,26:27:968:26:932:-68.2298,0,-71.4465	0/1:17:10,7:10:360:7:252:-17.7866,0,-27.4493	1/1:18:0,18:0:0:18:635:-57.1849,-5.41854,0	1/1:26:0,26:0:0:26:927:-83.3043,-7.82678,0	0/1:12:6,6:6:216:6:207:-15.3306,0,-16.1369	0/1:47:27,19:27:956:19:680:-47.2245,0,-72.0305	0/1:17:6,11:6:216:11:396:-30.8608,0,-14.6706	1/1:175:1,174:1:36:174:6236:-557.475,-49.0824,0	1/1:30:0,30:0:0:30:1072:-96.7792,-9.0309,0
chr07	25655598	.	A	T	28546.6	PASS	AB=0.53199;ABP=30.7963;AC=47;AF=0.252688;AN=186;AO=1677;CIGAR=1X;DP=6459;DPB=6459;DPRA=1.10129;EPP=3644.57;EPPR=10384.8;GTI=1;LEN=1;MEANALT=1.01818;MQM=55.2761;MQMR=55.5076;NS=93;NUMALT=1;ODDS=2.06156;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60074;QR=167903;RO=4781;RPL=0;RPP=3644.57;RPPR=10384.8;RPR=1677;RUN=1;SAF=1677;SAP=3644.57;SAR=0;SRF=4781;SRP=10384.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:20,32:20:708:32:1129:-85.737,0,-48.0705	0/1:81:44,37:44:1552:37:1328:-94.8107,0,-114.898	0/1:116:60,56:60:2087:56:2008:-145.11,0,-151.667	0/0:189:189,0:189:6623:0:0:0,-56.8947,-595.984	0/0:52:50,2:50:1708:2:72:0,-8.82653,-146.915	0/0:30:30,0:30:1068:0:0:0,-9.0309,-95.9349	0/1:100:39,61:39:1338:61:2184:-166.678,0,-90.5792	0/0:96:96,0:96:3385:0:0:0,-28.8989,-303.344	0/1:90:30,60:30:1060:60:2160:-166.519,0,-68.1424	0/1:76:23,53:23:812:53:1896:-148.013,0,-50.5143	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.7896	0/1:25:11,14:11:384:14:504:-37.9246,0,-27.2055	0/1:19:7,12:7:244:12:428:-32.9372,0,-16.4763	0/1:34:16,18:16:572:18:648:-48.3206,0,-41.5072	0/1:31:17,14:17:600:14:478:-34.0072,0,-44.9894	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.8375	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.3339	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.0834	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.32	0/1:194:94,100:94:3261:100:3584:-264.307,0,-235.273	0/1:112:44,68:44:1564:68:2444:-186.093,0,-107.09	0/0:116:116,0:116:4082:0:0:0,-34.9195,-367.528	0/1:154:74,80:74:2644:80:2864:-211.569,0,-191.721	0/1:64:56,8:56:1970:8:288:-6.9511,0,-158.055	0/1:70:32,38:32:1128:38:1364:-101.777,0,-80.6253	0/1:247:122,125:122:4305:125:4488:-329.68,0,-313.169	0/0:139:139,0:139:4826:0:0:0,-41.8432,-433.92	0/1:10:4,5:4:144:5:180:-13.4468,0,-10.2262	0/0:200:200,0:200:6980:0:0:0,-60.206,-628.194	0/0:107:107,0:107:3797:0:0:0,-32.2102,-340.137	0/0:118:116,2:116:4087:2:72:0,-28.6857,-361.126	.:.:.:.:.:.:.:.	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5076	0/1:3:1,2:1:36:2:72:-5.89657,0,-2.67568	0/1:6:4,2:4:144:2:72:-4.99348,0,-11.4353	0/1:10:3,7:3:104:7:252:-19.8938,0,-6.64873	0/0:60:60,0:60:2109:0:0:0,-18.0618,-190.035	0/0:155:155,0:155:5497:0:0:0,-46.6596,-494.068	0/1:13:9,4:9:324:4:144:-9.32805,0,-25.4325	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/1:100:53,47:53:1813:47:1692:-122.209,0,-133.066	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2119	0/1:117:64,53:64:2260:53:1900:-135.771,0,-168.099	0/1:18:8,10:8:288:10:360:-27.3217,0,-20.8456	0/1:20:11,9:11:388:9:324:-23.4774,0,-29.2243	0/0:90:90,0:90:3160:0:0:0,-27.0927,-284.59	0/0:75:75,0:75:2602:0:0:0,-22.5772,-233.323	0/1:101:72,29:72:2517:29:1040:-63.4989,0,-196.333	0/0:92:92,0:92:3213:0:0:0,-27.6948,-289.351	0/0:90:90,0:90:3153:0:0:0,-27.0927,-283.951	0/0:101:101,0:101:3501:0:0:0,-30.404,-315.248	0/1:11:8,3:8:265:3:108:-6.73982,0,-20.8567	0/1:110:72,38:72:2495:38:1355:-88.4931,0,-190.68	0/1:71:36,35:36:1268:35:1241:-90.5715,0,-93.0148	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.32	0/1:77:34,43:34:1200:43:1548:-116.21,0,-84.981	0/1:44:24,20:24:844:20:720:-51.8712,0,-63.0192	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.312	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.8164	0/0:97:96,1:96:3381:1:36:0,-25.6067,-300.288	0/0:57:56,1:56:1981:1:36:0,-13.5609,-174.936	0/1:4:3,1:3:100:1:36:-2.39371,0,-8.12557	0/0:142:142,0:142:4980:0:0:0,-42.7463,-448.312	0/0:115:113,2:113:3950:2:72:0,-27.7826,-348.781	0/1:51:22,29:22:769:29:1035:-77.9809,0,-54.0845	0/0:47:47,0:47:1660:0:0:0,-14.1484,-149.655	0/0:122:119,3:119:4209:3:108:0,-26.6517,-368.83	0/1:176:50,126:50:1772:126:4515:-353.45,0,-106.758	0/1:10:6,4:6:212:4:140:-9.91823,0,-16.376	0/0:57:57,0:57:2009:0:0:0,-17.1587,-180.17	0/1:35:14,21:14:495:21:756:-57.8227,0,-34.3417	0/1:10:4,6:4:144:6:212:-16.408,0,-10.3017	0/0:104:104,0:104:3624:0:0:0,-31.3071,-324.861	0/0:67:67,0:67:2360:0:0:0,-20.169,-211.585	0/1:268:67,201:67:2384:201:7174:-563.967,0,-133.827	0/1:156:89,67:89:3117:67:2412:-170.297,0,-233.741	0/1:56:23,33:23:820:33:1188:-89.7896,0,-56.8801	0/0:71:71,0:71:2478:0:0:0,-21.3731,-222.184	0/0:9:9,0:9:312:0:0:0,-2.70927,-28.2872	0/0:119:117,2:117:4145:2:72:0,-28.9955,-365.841	0/0:90:90,0:90:3165:0:0:0,-27.0927,-283.669	0/0:114:114,0:114:3990:0:0:0,-34.3174,-359.207	0/0:50:50,0:50:1761:0:0:0,-15.0515,-158.726	0/1:18:9,9:9:316:9:324:-24.0837,0,-23.3572	0/1:23:12,11:12:420:11:396:-29.0324,0,-31.2045	0/1:52:27,25:27:956:25:891:-64.8371,0,-70.6906	0/1:15:7,8:7:252:8:288:-21.6095,0,-18.3887	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.2816	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.2584	0/1:13:6,7:6:208:7:252:-19.0566,0,-15.1232	0/1:46:20,26:20:700:26:932:-70.2343,0,-49.3923	0/1:17:11,6:11:396:6:216:-14.6706,0,-30.8608	0/0:163:162,1:162:5674:1:36:0,-45.4701,-507.013	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6547
chr07	25655667	.	T	C	115508	PASS	AB=0.494866;ABP=3.70152;AC=139;AF=0.739362;AN=188;AO=5500;CIGAR=1X;DP=7053;DPB=7053;DPRA=23.2187;EPP=11937.4;EPPR=3368.79;GTI=2;LEN=1;MEANALT=1.03297;MQM=59.9807;MQMR=59.9619;NS=94;NUMALT=1;ODDS=0.32301;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194744;QR=55315;RO=1550;RPL=1;RPP=11937.4;RPPR=3368.79;RPR=5499;RUN=1;SAF=0;SAP=11946.1;SAR=5500;SRF=0;SRP=3368.79;SRR=1550;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:16,14:16:568:14:487:-35.1283,0,-42.421	0/1:34:16,18:16:568:18:633:-47.06,0,-41.2168	0/1:48:26,22:26:919:22:775:-55.6217,0,-68.5767	1/1:268:0,267:0:0:267:9429:-848.215,-80.375,0	1/1:59:1,58:1:32:58:2052:-181.75,-14.5615,0	1/1:46:0,46:0:0:46:1620:-146.086,-13.8474,0	0/1:117:61,56:61:2160:56:1999:-144.963,0,-159.447	1/1:68:0,68:0:0:68:2411:-217.237,-20.47,0	0/1:40:11,29:11:392:29:1031:-81.0614,0,-23.5789	0/1:101:56,45:56:2012:45:1568:-111.004,0,-150.947	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:17:9,8:9:324:8:275:-19.966,0,-24.3874	0/1:43:24,19:24:856:19:676:-48.2237,0,-64.4168	0/1:38:16,22:16:567:22:779:-58.9929,0,-39.9216	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:244:109,135:109:3863:135:4789:-357.716,0,-274.414	0/1:82:43,39:43:1548:39:1379:-99.7235,0,-114.929	1/1:80:0,80:0:0:80:2830:-254.938,-24.0824,0	0/1:107:62,45:62:2212:45:1550:-107.576,0,-167.135	1/1:125:4,121:4:144:121:4336:-377.101,-24.3151,0	0/1:45:19,26:19:684:26:924:-69.9313,0,-48.344	0/1:243:111,132:111:3980:132:4715:-351.36,0,-285.24	1/1:177:0,177:0:0:177:6303:-567.366,-53.2823,0	0/1:15:5,10:5:171:10:360:-28.2289,0,-11.21	1/1:245:0,245:0:0:245:8633:-776.485,-73.7524,0	1/1:223:1,222:1:36:222:7876:-705.276,-63.5314,0	1/1:130:0,130:0:0:130:4591:-413.358,-39.1339,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	1/1:101:0,101:0:0:101:3527:-317.641,-30.404,0	1/1:145:0,144:0:0:144:5137:-462.113,-43.3483,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:154:75,79:75:2684:79:2803:-206.152,0,-195.446	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:142:64,78:64:2276:78:2775:-207.245,0,-162.355	0/1:37:23,14:23:819:14:496:-33.8362,0,-62.8935	0/1:34:15,19:15:540:19:657:-49.2165,0,-38.7015	1/1:150:0,150:0:0:150:5340:-480.737,-45.1545,0	1/1:48:0,48:0:0:48:1675:-151.033,-14.4494,0	0/1:137:75,62:75:2670:62:2220:-158.823,0,-199.304	1/1:85:0,85:0:0:85:3019:-271.943,-25.5876,0	1/1:142:0,142:0:0:142:5046:-454.287,-42.7463,0	1/1:140:0,140:0:0:140:4969:-447.36,-42.1442,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:88:48,40:48:1711:40:1431:-102.596,0,-127.784	0/1:70:26,44:26:932:44:1555:-119.169,0,-63.1268	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:105:48,57:48:1720:57:2023:-150.733,0,-123.477	0/1:74:28,46:28:1004:46:1640:-125.612,0,-68.3996	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:87:0,87:0:0:87:3111:-280.21,-26.1896,0	1/1:64:0,64:0:0:64:2257:-203.393,-19.2659,0	0/1:11:6,5:6:208:5:180:-13.2407,0,-15.7478	1/1:210:0,210:0:0:210:7384:-664.614,-63.2163,0	1/1:312:1,311:1:36:311:10962:-982.882,-90.3231,0	0/1:77:49,28:49:1760:28:987:-65.9637,0,-135.505	1/1:69:0,69:0:0:69:2455:-221.204,-20.7711,0	1/1:188:6,182:6:208:182:6444:-560.992,-37.5346,0	0/1:82:68,14:68:2420:14:488:-19.566,0,-193.372	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:25:0,25:0:0:25:887:-80.148,-7.52575,0	0/1:46:28,17:28:1008:17:599:-40.37,0,-77.1687	0/1:15:3,12:3:104:12:420:-33.6186,0,-5.18736	1/1:70:0,70:0:0:70:2455:-221.204,-21.0721,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:229:106,123:106:3784:123:4336:-321.484,0,-271.788	0/1:194:106,88:106:3796:88:3126:-223.167,0,-283.438	0/1:64:20,44:20:720:44:1576:-122.866,0,-45.8629	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:44:0,44:0:0:44:1558:-140.51,-13.2453,0	1/1:185:1,184:1:36:184:6491:-580.683,-52.0923,0	1/1:65:0,65:0:0:65:2276:-205.101,-19.567,0	0/1:16:11,5:11:396:5:176:-11.3685,0,-31.1663	0/1:48:22,26:22:784:26:921:-68.7574,0,-56.4311	0/1:53:28,25:28:996:25:896:-65.0058,0,-74.0003	0/1:7:5,2:5:176:2:68:-4.3505,0,-14.0778	1/1:24:0,24:0:0:24:824:-74.4725,-7.22472,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:11:9,2:9:316:2:72:-3.52539,0,-25.4675	0/1:47:26,21:26:936:21:740:-52.775,0,-70.4111	0/1:40:29,11:29:1036:11:388:-23.2162,0,-81.4566	1/1:158:0,158:0:0:158:5602:-504.304,-47.5627,0	1/1:54:2,52:2:72:52:1835:-158.593,-9.4189,0
chr07	25782462	.	A	G	31156.7	PASS	AB=0.505056;ABP=3.82275;AC=43;AF=0.228723;AN=188;AO=1871;CIGAR=1X;DP=8687;DPB=8687;DPRA=1.03731;EPP=4065.84;EPPR=14786.4;GTI=2;LEN=1;MEANALT=1.05882;MQM=59.9979;MQMR=60;NS=94;NUMALT=1;ODDS=0.458847;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66811;QR=243907;RO=6812;RPL=0;RPP=4065.84;RPPR=14786.4;RPR=1871;RUN=1;SAF=0;SAP=4065.84;SAR=1871;SRF=0;SRP=14795.1;SRR=6812;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:13,20:13:468:20:711:-54.3817,0,-32.5257	0/1:142:60,82:60:2156:82:2912:-219.568,0,-151.561	0/1:127:65,62:65:2313:62:2208:-160.753,0,-170.198	0/0:243:242,1:242:8620:1:36:0,-69.552,-772.201	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:109:70,39:70:2508:39:1399:-93.397,0,-193.16	0/0:127:127,0:127:4551:0:0:0,-38.2308,-409.755	0/1:79:38,41:38:1355:41:1476:-109.355,0,-98.4683	0/1:63:28,35:28:1004:35:1256:-94.3804,0,-71.711	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:57:34,23:34:1220:23:813:-56.3304,0,-92.9481	0/1:47:18,29:18:648:29:1018:-77.782,0,-44.5035	0/1:72:32,40:32:1140:40:1425:-106.871,0,-81.235	0/1:37:25,12:25:900:12:417:-26.7221,0,-70.1829	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:185:85,100:85:3052:100:3583:-266.986,0,-219.218	0/1:121:58,63:58:2060:63:2249:-166.247,0,-149.247	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/1:69:38,31:38:1364:31:1103:-78.8087,0,-102.29	0/0:85:78,7:78:2782:7:252:0,-2.55859,-227.591	0/1:51:30,21:30:1065:21:752:-52.6537,0,-80.8072	0/1:261:134,127:134:4794:127:4545:-330.645,0,-353.046	0/0:210:210,0:210:7511:0:0:0,-63.2163,-676.029	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/0:322:322,0:322:11518:0:0:0,-96.9317,-1036.49	0/0:224:224,0:224:8028:0:0:0,-67.4307,-722.539	0/0:166:166,0:166:5955:0:0:0,-49.971,-536.055	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:148:148,0:148:5284:0:0:0,-44.5524,-475.695	0/0:225:224,0:224:7992:0:0:0,-67.4307,-719.092	0/1:25:14,11:14:500:11:396:-28.457,0,-37.8104	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:239:129,110:129:4617:110:3931:-282.036,0,-343.746	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:140:70,70:70:2481:70:2501:-183.197,0,-181.398	0/1:38:22,16:22:779:16:572:-40.3743,0,-58.9929	0/1:50:32,18:32:1144:18:626:-41.6118,0,-88.218	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:87:87,0:87:3123:0:0:0,-26.1896,-281.295	0/1:215:97,117:97:3480:117:4195:-313.099,0,-248.779	0/0:142:140,1:140:5016:1:36:0,-39.1259,-448.068	0/0:114:114,0:114:4100:0:0:0,-34.3174,-369.183	0/0:169:169,0:169:6053:0:0:0,-50.8741,-544.871	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:174:83,91:83:2980:91:3270:-242.14,0,-216.053	0/1:40:16,24:16:572:24:864:-66.0414,0,-39.7722	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:112:47,65:47:1688:65:2308:-174.264,0,-118.492	0/1:27:11,16:11:396:16:572:-43.6833,0,-27.8549	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:88:88,0:88:3155:0:0:0,-26.4906,-284.174	0/0:109:108,1:108:3852:1:36:0,-29.214,-343.276	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:297:297,0:297:10655:0:0:0,-89.4059,-958.855	0/0:190:182,8:182:6514:8:288:0,-30.9283,-560.073	0/1:46:22,24:22:792:24:852:-63.1524,0,-57.7583	0/0:107:106,1:106:3800:1:21:0,-30.1103,-340.098	0/0:165:165,0:165:5924:0:0:0,-49.6699,-533.266	0/1:85:27,58:27:957:58:2084:-162.242,0,-60.8563	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/1:96:50,46:50:1800:46:1639:-118.899,0,-133.383	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/0:141:141,0:141:5041:0:0:0,-42.4452,-453.835	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:177:84,93:84:3012:93:3348:-248.253,0,-218.028	0/1:222:98,124:98:3498:124:4383:-327.813,0,-248.201	0/1:110:65,45:65:2332:45:1620:-112.977,0,-177.026	0/0:157:157,0:157:5623:0:0:0,-47.2617,-506.19	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:177:174,3:174:6240:3:108:0,-43.2071,-551.619	0/0:88:88,0:88:3159:0:0:0,-26.4906,-284.534	0/0:179:179,0:179:6400:0:0:0,-53.8844,-576.087	0/0:80:79,1:79:2827:1:36:0,-20.4841,-251.07	0/1:51:30,21:30:1071:21:741:-51.6591,0,-81.3491	0/1:59:29,30:29:1025:30:1076:-79.3921,0,-74.7999	0/1:103:54,49:54:1940:49:1764:-128.038,0,-143.87	0/1:34:17,16:17:604:16:576:-42.0222,0,-44.5386	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:59:26,33:26:936:33:1165:-87.3942,0,-66.7987	0/1:31:12,19:12:428:19:676:-51.8361,0,-29.5269	0/0:126:126,0:126:4481:0:0:0,-37.9298,-403.458	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261
chr07	25849221	.	G	A	148729	PASS	AB=0.508098;ABP=10.466;AC=45;AF=0.239362;AN=188;AO=6701;CIGAR=1X;DP=28822;DPB=28822;DPRA=1.47623;EPP=14554;EPPR=48003.4;GTI=0;LEN=1;MEANALT=1.16949;MQM=51.0858;MQMR=59.8113;NS=94;NUMALT=1;ODDS=0.466405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238183;QR=778889;RO=22109;RPL=3067;RPP=107.189;RPPR=286.523;RPR=3634;RUN=1;SAF=3067;SAP=107.189;SAR=3634;SRF=10204;SRP=287.191;SRR=11905;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:133:73,60:73:2571:60:2123:-150.397,0,-191.603	0/1:258:120,138:120:4194:138:4901:-356.208,0,-299.952	0/1:554:295,259:295:10452:259:9217:-650.107,0,-772.771	0/0:1074:1073,1:1073:37878:1:36:0,-319.708,-3403.95	0/0:292:292,0:292:10219:0:0:0,-87.9008,-919.642	0/0:146:145,1:145:5127:1:36:0,-40.3521,-457.96	0/1:225:128,97:128:4483:97:3437:-238.418,0,-335.91	0/0:504:504,0:504:17744:0:0:0,-151.719,-1596.46	0/1:395:192,203:192:6774:203:7195:-515.721,0,-490.735	0/1:273:142,131:142:5054:131:4654:-331.297,0,-372.81	0/0:82:82,0:82:2894:0:0:0,-24.6845,-260.687	0/1:234:109,125:109:3840:125:4419:-316.19,0,-275.315	0/0:169:168,1:168:5949:1:36:0,-47.2758,-531.593	0/1:134:69,65:69:2438:65:2311:-163.399,0,-179.337	0/1:164:75,89:75:2684:89:3188:-233.162,0,-192.431	0/0:137:137,0:137:4806:0:0:0,-41.2411,-432.318	0/0:77:77,0:77:2700:0:0:0,-23.1793,-243.217	0/0:72:72,0:72:2533:0:0:0,-21.6742,-228.213	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.315	0/1:783:420,363:420:14777:363:12961:-917.049,0,-1093.81	0/1:574:284,290:284:10002:290:10299:-738.736,0,-727.335	0/0:616:616,0:616:21660:0:0:0,-185.434,-1948.02	0/1:513:249,264:249:8776:264:9397:-680.949,0,-635.397	0/0:246:226,20:226:7930:20:689:0,-15.1413,-654.575	0/1:368:188,180:188:6632:180:6400:-452.111,0,-486.185	0/1:1035:475,558:475:16690:558:19795:-1441.4,0,-1190.4	0/0:660:656,3:656:23095:3:108:0,-188.633,-2067.73	0/1:82:44,38:44:1555:38:1364:-94.6858,0,-115.547	0/0:989:988,1:988:34797:1:36:0,-294.129,-3126.34	0/0:507:507,0:507:17872:0:0:0,-152.622,-1608.07	0/0:330:329,0:329:11621:0:0:0,-99.0389,-1045.39	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7112	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7117	0/1:19:16,3:16:557:3:108:-4.13612,0,-44.7278	0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6803	0/1:20:11,9:11:388:9:297:-20.4772,0,-29.2368	0/0:406:406,0:406:14329:0:0:0,-122.218,-1289.12	0/0:497:495,1:495:17357:1:32:0,-146.45,-1558.49	0/1:73:36,37:36:1280:37:1297:-92.8501,0,-93.5247	0/1:12:9,3:9:324:3:108:-6.06021,0,-25.8935	0/1:570:257,313:257:8983:313:11128:-817.305,0,-636.726	0/0:53:52,0:52:1847:0:0:0,-15.6536,-166.292	0/1:745:317,428:317:11135:428:15182:-1112.79,0,-777.405	0/1:136:66,70:66:2323:70:2499:-179.633,0,-168.391	0/1:109:63,46:63:2199:46:1648:-113.911,0,-165.36	0/0:392:392,0:392:13802:0:0:0,-118.004,-1241.63	0/0:490:490,0:490:17253:0:0:0,-147.505,-1552.33	0/1:759:434,325:434:15322:325:11567:-798.124,0,-1150.01	0/0:280:280,0:280:9867:0:0:0,-84.2884,-887.943	0/0:426:425,1:425:14959:1:36:0,-124.64,-1342.39	0/0:262:262,0:262:9220:0:0:0,-78.8699,-829.766	0/1:23:9,14:9:311:14:504:-38.0808,0,-21.3977	0/1:354:194,160:194:6826:160:5696:-396.709,0,-507.816	0/1:233:104,129:104:3654:129:4584:-335.781,0,-258.917	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8052	0/1:490:249,241:249:8702:241:8591:-609.646,0,-635.668	0/1:264:117,147:117:4125:147:5223:-380.688,0,-291.949	0/0:17:17,0:17:588:0:0:0,-5.11751,-53.0753	0/0:45:45,0:45:1580:0:0:0,-13.5463,-142.48	0/0:234:234,0:234:8310:0:0:0,-70.441,-747.808	0/0:155:155,0:155:5526:0:0:0,-46.6596,-497.409	0/1:18:5,13:5:180:13:468:-36.4338,0,-11.1335	0/0:661:661,0:661:23256:0:0:0,-198.981,-2091.26	0/0:794:784,8:784:27676:8:275:0,-213.9,-2465.04	0/1:199:105,94:105:3753:94:3364:-234.852,0,-277.977	0/0:356:354,1:354:12368:1:36:0,-103.627,-1109.38	0/0:690:683,6:683:23962:6:212:0,-188.643,-2136.54	0/1:494:157,337:157:5552:337:12015:-911.92,0,-351.097	0/1:64:34,30:34:1216:30:1050:-73.1754,0,-90.4357	0/0:220:220,0:220:7714:0:0:0,-66.2266,-694.229	0/1:93:44,49:44:1564:49:1744:-125.256,0,-113.056	0/1:40:17,23:17:604:23:811:-59.9136,0,-42.6494	0/0:300:300,0:300:10590:0:0:0,-90.309,-952.711	0/0:201:201,0:201:7150:0:0:0,-60.507,-643.534	0/1:588:321,266:321:11325:266:9440:-650.721,0,-842.012	0/1:523:275,248:275:9723:248:8797:-621.492,0,-717.577	0/1:469:234,235:234:8259:235:8342:-599.127,0,-602.056	0/0:361:357,4:357:12525:4:144:0,-95.3582,-1113.74	0/0:22:22,0:22:763:0:0:0,-6.62266,-68.9885	0/0:389:389,0:389:13787:0:0:0,-117.101,-1240.6	0/0:429:428,1:428:15000:1:36:0,-125.544,-1346.1	0/0:773:773,0:773:27294:0:0:0,-232.696,-2455.28	0/0:113:113,0:113:3956:0:0:0,-34.0164,-356.233	0/1:194:103,91:103:3607:91:3251:-229.756,0,-266.438	0/1:125:63,62:63:2214:62:2208:-159.093,0,-161.893	0/1:290:144,146:144:5090:146:5169:-370.707,0,-370.92	0/1:42:24,18:24:860:18:640:-43.8099,0,-65.0704	0/0:145:145,0:145:5126:0:0:0,-43.6493,-461.458	0/0:150:150,0:150:5301:0:0:0,-45.1545,-477.03	0/1:54:34,20:34:1216:20:716:-47.341,0,-93.4909	0/1:169:64,104:64:2262:104:3701:-270.154,0,-152.905	0/1:196:66,130:66:2343:130:4626:-350.872,0,-152.127	0/0:633:632,1:632:22183:1:36:0,-186.954,-1992.02	0/0:225:225,0:225:7982:0:0:0,-67.7317,-718.373
chr07	25849227	.	T	C	149901	PASS	AB=0.503417;ABP=4.3608;AC=45;AF=0.239362;AN=188;AO=6750;CIGAR=1X;DP=29417;DPB=29417;DPRA=1.30666;EPP=14660.4;EPPR=49206.4;GTI=1;LEN=1;MEANALT=1.07143;MQM=51.0036;MQMR=59.8176;NS=94;NUMALT=1;ODDS=1.51432;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240347;QR=810523;RO=22663;RPL=3118;RPP=88.0021;RPPR=534.407;RPR=3632;RUN=1;SAF=3118;SAP=88.0021;SAR=3632;SRF=10153;SRP=535.31;SRR=12510;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:138:76,62:76:2712:62:2201:-155.741,0,-202.771	0/1:262:123,139:123:4412:139:4967:-360.968,0,-318.349	0/1:558:302,256:302:10716:256:9130:-641.616,0,-796.085	0/0:1109:1108,1:1108:39659:1:36:0,-330.244,-3564.35	0/0:299:299,0:299:10711:0:0:0,-90.008,-963.874	0/0:150:149,1:149:5343:1:36:0,-41.5562,-477.383	0/1:231:133,98:133:4740:98:3476:-239.154,0,-357.218	0/0:519:519,0:519:18560:0:0:0,-156.235,-1669.81	0/1:409:199,210:199:7092:210:7483:-537.007,0,-515.159	0/1:276:143,133:143:5091:133:4722:-336.593,0,-375.231	0/0:86:86,0:86:3061:0:0:0,-25.8886,-275.713	0/1:237:110,127:110:3929:127:4515:-324.475,0,-282.425	0/0:166:166,0:166:5942:0:0:0,-49.971,-534.729	0/1:136:69,67:69:2480:67:2383:-169.281,0,-182.513	0/1:166:77,89:77:2764:89:3188:-232.51,0,-199.025	0/0:134:134,0:134:4820:0:0:0,-40.338,-433.617	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.573	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.801	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.913	0/1:805:437,368:437:15613:368:13096:-922.528,0,-1162.02	0/1:599:305,294:305:10904:294:10441:-743.493,0,-800.936	0/0:626:626,0:626:22429:0:0:0,-188.445,-2017.17	0/1:518:254,264:254:9088:264:9416:-680.295,0,-661.947	0/0:251:231,20:231:8258:20:704:0,-15.4033,-681.84	0/1:372:197,175:197:6996:175:6239:-437.474,0,-517.72	0/1:1063:499,563:499:17876:563:20052:-1455.65,0,-1288.34	0/0:678:674,3:674:24090:3:108:0,-194.082,-2156.47	0/1:84:44,40:44:1575:40:1419:-99.035,0,-116.745	0/0:1013:1013,0:1013:36309:0:0:0,-304.943,-3265.97	0/0:515:515,0:515:18392:0:0:0,-155.03,-1654.81	0/0:342:342,0:342:12218:0:0:0,-102.952,-1097.88	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.0764	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7933	0/1:18:15,3:15:536:3:108:-4.43715,0,-43.1481	0/0:16:16,0:16:553:0:0:0,-4.81648,-50.094	0/1:20:11,9:11:392:9:324:-22.2713,0,-29.5995	0/0:408:408,0:408:14570:0:0:0,-122.82,-1310.72	0/0:533:531,1:531:19009:1:36:0,-156.89,-1706.3	0/1:73:36,37:36:1296:37:1316:-94.4002,0,-94.9654	0/1:12:9,3:9:324:3:108:-6.06021,0,-25.8935	0/1:575:262,313:262:9381:313:11178:-819.895,0,-670.939	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.03	0/1:756:319,436:319:11412:436:15501:-1135.97,0,-798.116	0/1:139:68,71:68:2427:71:2518:-180.626,0,-176.841	0/1:114:65,49:65:2340:49:1729:-119.458,0,-176.537	0/0:397:397,0:397:14173:0:0:0,-119.509,-1274.88	0/0:513:513,0:513:18351:0:0:0,-154.428,-1651.01	0/1:787:458,329:458:16359:329:11723:-803.809,0,-1234.86	0/0:282:282,0:282:10086:0:0:0,-84.8905,-907.563	0/0:433:432,1:432:15431:1:36:0,-126.748,-1384.78	0/0:270:270,0:270:9654:0:0:0,-81.2781,-868.778	0/1:23:9,14:9:324:14:500:-37.7189,0,-22.5798	0/1:357:198,159:198:7081:159:5649:-391.63,0,-529.782	0/1:236:107,129:107:3835:129:4606:-336.909,0,-274.294	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6437	0/1:505:261,244:261:9330:244:8682:-613.494,0,-687.625	0/1:265:117,148:117:4158:148:5267:-383.666,0,-294.622	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1668	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.031	0/0:236:236,0:236:8436:0:0:0,-71.0431,-759.078	0/0:156:156,0:156:5599:0:0:0,-46.9607,-503.885	0/1:20:7,13:7:252:13:464:-35.4696,0,-17.0084	0/0:679:679,0:679:24268:0:0:0,-204.399,-2182.9	0/0:803:795,8:795:28459:8:275:0,-216.856,-2535.41	0/1:196:102,94:102:3653:94:3335:-233.679,0,-269.961	0/0:372:371,1:371:13263:1:36:0,-108.385,-1189.85	0/0:700:694,6:694:24795:6:216:0,-191.281,-2211.19	0/1:499:162,337:162:5771:337:12036:-912.59,0,-369.284	0/1:67:36,31:36:1288:31:1104:-76.8019,0,-96.0097	0/0:221:221,0:221:7920:0:0:0,-66.5276,-712.752	0/1:95:46,49:46:1656:49:1730:-123.58,0,-120.727	0/1:41:18,23:18:648:23:803:-58.9755,0,-46.3097	0/0:306:306,0:306:10918:0:0:0,-92.1152,-982.369	0/0:209:209,0:209:7500:0:0:0,-62.9153,-674.998	0/1:591:324,267:324:11607:267:9536:-658.168,0,-865.977	0/1:531:280,251:280:10002:251:8937:-631.717,0,-740.254	0/1:463:229,234:229:8216:234:8310:-598.458,0,-600.037	0/0:376:372,4:372:13306:4:144:0,-99.8737,-1183.93	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:402:402,0:402:14392:0:0:0,-121.014,-1295	0/0:436:436,0:436:15602:0:0:0,-131.249,-1403.81	0/0:788:788,0:788:28157:0:0:0,-237.212,-2532.89	0/0:114:114,0:114:4062:0:0:0,-34.3174,-365.765	0/1:193:104,89:104:3720:89:3158:-221.951,0,-276.903	0/1:124:63,61:63:2251:61:2170:-155.962,0,-165.525	0/1:297:146,151:146:5222:151:5383:-387.829,0,-380.678	0/1:43:24,19:24:836:19:675:-46.5209,0,-62.6022	0/0:149:149,0:149:5343:0:0:0,-44.8535,-480.969	0/0:152:152,0:152:5452:0:0:0,-45.7566,-490.378	0/1:55:35,20:35:1252:20:720:-47.401,0,-96.4284	0/1:168:65,103:65:2332:103:3658:-266.761,0,-159.56	0/1:198:66,132:66:2329:132:4728:-359.171,0,-150.26	0/0:642:641,1:641:22923:1:36:0,-189.663,-2058.85	0/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chr07	25889138	.	GCC	ACG,GCG	178918	PASS	AB=0.50843,0.487092;ABP=5.35339,8.50419;AC=143,45;AF=0.760638,0.239362;AN=188;AO=6801,1857;CIGAR=1X1M1X,2M1X;DP=8697;DPB=8697;DPRA=93.5054,0.876275;EPP=14771.2,4035.43;EPPR=0;GTI=1;LEN=3,1;MEANALT=1.88172,2.35417;MQM=59.9669,59.9575;MQMR=0;NS=94;NUMALT=2;ODDS=1.56061;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=232832,66325;QR=0;RO=0;RPL=0,0;RPP=14771.2,4035.43;RPPR=0;RPR=6801,1857;RUN=1,1;SAF=6801,1857;SAP=14771.2,4035.43;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,13,14:0:0:13,14:425,504:-75.7917,-41.4837,-37.5703,-34.6508,0,-30.4364	1/2:160:0,77,79:0:0:77,79:2652,2816:-444.943,-229.544,-206.365,-215.395,0,-191.613	1/2:139:0,77,61:0:0:77,61:2598,2155:-386.074,-175.531,-152.352,-210.568,0,-192.205	1/1:318:0,317,0:0:0:317,0:10873,0:-978.16,-95.4265,0,-978.16,-95.4265,-978.16	1/1:69:0,69,0:0:0:69,0:2359,0:-212.567,-20.7711,0,-212.567,-20.7711,-212.567	1/1:41:0,41,0:0:0:41,0:1405,0:-126.743,-12.3422,0,-126.743,-12.3422,-126.743	1/2:139:0,70,68:0:0:70,68:2396,2446:-394.118,-199.643,-178.571,-194.544,0,-174.074	1/1:238:0,238,0:0:0:238,0:8032,0:-722.869,-71.6451,0,-722.869,-71.6451,-722.869	1/2:90:0,34,56:0:0:34,56:1182,2004:-259.873,-163.776,-153.541,-96.4481,0,-79.5904	1/2:114:0,59,55:0:0:59,55:2016,1957:-323.449,-159.847,-142.086,-163.951,0,-147.394	1/1:42:0,42,0:0:0:42,0:1431,0:-129.08,-12.6433,0,-129.08,-12.6433,-129.08	1/2:58:0,28,30:0:0:28,30:977,1080:-167.941,-88.4823,-80.0535,-79.8124,0,-70.7815	1/1:56:0,56,0:0:0:56,0:1920,0:-173.07,-16.8577,0,-173.07,-16.8577,-173.07	1/2:44:0,24,20:0:0:24,20:796,712:-122.675,-58.3861,-51.1613,-64.6338,0,-58.6132	1/2:54:0,35,19:0:0:35,19:1221,671:-154.299,-54.9962,-44.4602,-99.6541,0,-93.9346	1/1:53:0,52,1:0:0:52,1:1788,36:-160.838,-15.6536,0,-157.9,-12.3563,-157.599	1/1:57:0,57,0:0:0:57,0:1949,0:-175.683,-17.1587,0,-175.683,-17.1587,-175.683	1/1:68:0,68,0:0:0:68,0:2303,0:-207.53,-20.47,0,-207.53,-20.47,-207.53	1/1:35:0,35,0:0:0:35,0:1191,0:-107.489,-10.5361,0,-107.489,-10.5361,-107.489	1/2:196:0,102,92:0:0:102,92:3524,3284:-554.069,-267.75,-237.045,-286.335,0,-258.64	1/2:142:0,84,58:0:0:84,58:2942,2080:-409.196,-169.821,-144.534,-239.731,0,-222.271	1/1:83:0,83,0:0:0:83,0:2858,0:-257.461,-24.9855,0,-257.461,-24.9855,-257.461	1/2:94:0,44,50:0:0:44,50:1515,1792:-269.554,-146.511,-133.266,-123.394,0,-108.342	1/1:54:0,50,4:0:0:50,4:1743,144:-156.793,-15.0515,0,-145.042,-2.942,-143.838	1/2:46:0,22,24:0:0:22,24:759,860:-132.151,-70.4971,-63.8745,-62.0054,0,-54.7807	1/2:260:0,134,125:0:0:134,125:4542,4460:-731.953,-363.671,-323.333,-368.359,0,-330.73	1/1:172:0,169,0:0:0:169,0:5755,0:-517.784,-50.8741,0,-517.784,-50.8741,-517.784	1/2:37:0,22,15:0:0:22,15:739,540:-104.27,-44.4211,-37.7984,-60.1989,0,-55.6835	1/1:249:0,248,0:0:0:248,0:8508,0:-765.474,-74.6554,0,-765.474,-74.6554,-765.474	1/1:113:0,112,0:0:0:112,0:3809,0:-342.734,-33.7154,0,-342.734,-33.7154,-342.734	1/1:89:0,89,0:0:0:89,0:3057,0:-275.364,-26.7917,0,-275.364,-26.7917,-275.364	1/1:6:0,6,0:0:0:6,0:212,0:-19.425,-1.80618,0,-19.425,-1.80618,-19.425	1/1:20:0,20,0:0:0:20,0:668,0:-60.4324,-6.0206,0,-60.4324,-6.0206,-60.4324	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:5:0,5,0:0:0:5,0:172,0:-15.8174,-1.50515,0,-15.8174,-1.50515,-15.8174	1/2:6:0,4,2:0:0:4,2:138,72:-17.4361,-6.23466,-5.03054,-11.5563,0,-10.9542	1/1:161:0,161,0:0:0:161,0:5584,0:-502.699,-48.4658,0,-502.699,-48.4658,-502.699	1/1:130:0,127,1:0:0:127,1:4385,36:-394.502,-38.2308,0,-391.565,-35.2801,-391.264	1/2:59:0,22,37:0:0:22,37:755,1319:-169.169,-107.873,-101.25,-61.6435,0,-50.5054	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:105:0,45,60:0:0:45,60:1572,2152:-303.754,-175.885,-162.339,-128.222,0,-110.16	1/1:51:0,51,0:0:0:51,0:1701,0:-153.368,-15.3525,0,-153.368,-15.3525,-153.368	1/2:216:0,118,97:0:0:118,97:3938,3438:-598.914,-280.151,-244.63,-318.827,0,-289.627	1/2:72:0,39,33:0:0:39,33:1353,1172:-205.829,-95.8535,-84.1133,-110.326,0,-100.392	1/2:51:0,25,26:0:0:25,26:865,932:-146.658,-76.3721,-68.8463,-70.638,0,-62.8112	1/1:116:0,116,0:0:0:116,0:3926,0:-353.54,-34.9195,0,-353.54,-34.9195,-353.54	1/1:117:0,117,0:0:0:117,0:3967,0:-357.232,-35.2205,0,-357.232,-35.2205,-357.232	1/2:197:0,103,94:0:0:103,94:3513,3340:-557.549,-272.517,-241.51,-285.381,0,-257.084	1/1:117:0,117,0:0:0:117,0:3988,0:-359.122,-35.2205,0,-359.122,-35.2205,-359.122	1/1:111:0,110,0:0:0:110,0:3763,0:-338.518,-33.1133,0,-338.518,-33.1133,-338.518	1/1:150:0,149,0:0:0:149,0:5177,0:-465.763,-44.8535,0,-465.763,-44.8535,-465.763	1/2:8:0,5,3:0:0:5,3:170,108:-22.9486,-9.17208,-7.66693,-14.1288,0,-13.2257	1/2:138:0,79,58:0:0:79,58:2701,2084:-389.323,-170.118,-146.337,-219.304,0,-201.844	1/2:43:0,27,16:0:0:27,16:922,572:-121.806,-46.9969,-38.8691,-75.1609,0,-70.3444	1/1:8:0,8,0:0:0:8,0:276,0:-25.1749,-2.40824,0,-25.1749,-2.40824,-25.1749	1/2:123:0,65,57:0:0:65,57:2230,2044:-347.837,-166.792,-147.225,-181.115,0,-163.956	1/2:49:0,25,23:0:0:25,23:836,820:-134.506,-66.8299,-59.3042,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chr07	25889161	.	A	G	30880.9	PASS	AB=0.490991;ABP=5.67084;AC=45;AF=0.239362;AN=188;AO=1862;CIGAR=1X;DP=8637;DPB=8637;DPRA=0.913912;EPP=4046.29;EPPR=14625.8;GTI=1;LEN=1;MEANALT=1.02041;MQM=59.9748;MQMR=59.9727;NS=94;NUMALT=1;ODDS=1.28662;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66471;QR=242896;RO=6774;RPL=1862;RPP=4046.29;RPPR=14625.8;RPR=0;RUN=1;SAF=1862;SAP=4046.29;SAR=0;SRF=6774;SRP=14712.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:453:14:500:-37.2084,0,-32.9718	0/1:158:76,82:76:2732:82:2937:-217,0,-198.56	0/1:135:76,59:76:2728:59:2097:-148.359,0,-205.124	0/0:314:314,0:314:11231:0:0:0,-94.5234,-1010.67	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:137:68,69:68:2436:69:2447:-179.243,0,-178.254	0/0:235:235,0:235:8391:0:0:0,-70.742,-755.192	0/1:88:34,54:34:1220:54:1913:-145.954,0,-83.6162	0/1:115:59,56:59:2124:56:2003:-145.924,0,-156.81	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:58:28,30:28:1008:30:1071:-79.2425,0,-73.5766	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.699	0/1:44:24,20:24:849:20:720:-51.8835,0,-62.703	0/1:54:36,18:36:1296:18:640:-41.6737,0,-100.684	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.523	0/0:57:57,0:57:2037:0:0:0,-17.1587,-183.6	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:195:103,92:103:3680:92:3307:-239.147,0,-272.703	0/1:143:85,58:85:3060:58:2073:-143.601,0,-232.581	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:94:44,50:44:1569:50:1788:-132.906,0,-113.203	0/0:54:50,4:50:1800:4:144:0,-2.942,-148.969	0/1:46:22,24:22:788:24:860:-63.8745,0,-57.3974	0/1:258:133,125:133:4780:125:4449:-322.914,0,-352.689	0/0:170:170,0:170:6062:0:0:0,-51.1751,-545.665	0/1:37:22,15:22:792:15:540:-37.7984,0,-60.4672	0/0:249:249,0:249:8940:0:0:0,-74.9565,-804.572	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.488	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.512	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7659	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:160:160,0:160:5744:0:0:0,-48.1648,-517.074	0/0:130:129,1:129:4597:1:36:0,-35.5356,-410.297	0/1:59:22,37:22:792:37:1319:-101.25,0,-53.8449	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:106:45,61:45:1620:61:2196:-165.996,0,-114.181	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/1:214:118,96:118:4244:96:3386:-240.532,0,-317.717	0/1:74:39,35:39:1404:35:1239:-89.5374,0,-104.383	0/1:50:24,26:24:860:26:928:-68.7868,0,-62.6703	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.685	0/0:117:116,1:116:4161:1:36:0,-31.6222,-371.072	0/1:195:102,93:102:3645:93:3328:-241.026,0,-269.552	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/0:110:110,0:110:3945:0:0:0,-33.1133,-355.239	0/0:149:149,0:149:5344:0:0:0,-44.8535,-481.092	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:137:79,58:79:2828:58:2084:-146.589,0,-213.517	0/1:44:27,17:27:972:17:612:-42.1681,0,-74.5526	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:123:67,56:67:2389:56:2008:-143.967,0,-178.234	0/1:48:26,22:26:936:22:759:-54.1756,0,-70.11	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:81:81,0:81:2904:0:0:0,-24.3834,-260.818	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/1:5:2,3:2:57:3:108:-8.57002,0,-3.90816	0/0:171:171,0:171:6133:0:0:0,-51.4761,-552.066	0/0:159:159,0:159:5708:0:0:0,-47.8638,-513.836	0/1:40:22,18:22:788:18:648:-46.6107,0,-59.2036	0/0:172:172,0:172:6161:0:0:0,-51.7772,-554.586	0/0:172:172,0:172:6188:0:0:0,-51.7772,-557.013	0/1:182:50,132:50:1796:132:4744:-372.329,0,-107.135	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.331	0/1:57:27,30:27:972:30:1080:-80.3545,0,-70.6392	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:89:89,0:89:3185:0:0:0,-26.7917,-286.872	0/1:145:79,66:79:2821:66:2321:-165.497,0,-210.478	0/1:158:82,75:82:2948:75:2681:-193.912,0,-217.931	0/1:56:34,22:34:1224:22:792:-54.748,0,-93.6094	0/0:214:214,0:214:7662:0:0:0,-64.4204,-689.611	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:113:112,1:112:4013:1:36:0,-30.4181,-357.75	0/0:119:118,1:118:4236:1:32:0,-32.6233,-378.219	0/0:156:156,0:156:5604:0:0:0,-46.9607,-504.48	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:63:30,33:30:1080:33:1173:-86.9107,0,-78.5484	0/1:98:52,46:52:1868:46:1656:-119.827,0,-138.896	0/1:117:64,53:64:2304:53:1883:-134.526,0,-172.4	0/1:36:24,12:24:864:12:428:-28.0217,0,-67.2455	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	0/1:56:32,24:32:1148:24:856:-60.5034,0,-86.7722	0/1:60:18,42:18:648:42:1501:-117.322,0,-40.5901	0/0:116:116,0:116:4172:0:0:0,-34.9195,-375.66	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724
chr07	25902881	.	A	C,G	153663	PASS	AB=0.504255,0.494485;ABP=3.5092,3.84864;AC=144,44;AF=0.765957,0.234043;AN=188;AO=6030,1587;CIGAR=1X,1X;DP=7622;DPB=7622;DPRA=27.3082,1.07994;EPP=12993,3440.46;EPPR=7.35324;GTI=2;LEN=1,1;MEANALT=1.5914,2;MQM=40.8959,37.8979;MQMR=38.5;NS=94;NUMALT=2;ODDS=3.34807;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=213674,56273;QR=68;RO=2;RPL=6018,1586;RPP=12993,3440.46;RPPR=7.35324;RPR=12,1;RUN=1,1;SAF=6030,1587;SAP=13097,3449.14;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:36:0,20,16:0:0:20,16:708,568:-95.1133,-41.7385,-35.7179,-53.6998,0,-48.8833	1/2:62:0,27,35:0:0:27,35:953,1241:-162.692,-90.6331,-82.5052,-72.3844,0,-61.8483	1/2:141:0,86,55:0:0:86,55:3023,1972:-372.369,-142.492,-116.604,-230.201,0,-213.644	1/1:199:0,199,0:0:0:199,0:7097,0:-621.082,-59.905,0,-621.082,-59.905,-621.082	1/1:48:0,48,0:0:0:48,0:1686,0:-145.536,-14.4494,0,-145.536,-14.4494,-145.536	1/1:23:0,23,0:0:0:23,0:805,0:-68.9476,-6.92369,0,-68.9476,-6.92369,-68.9476	1/2:60:0,29,31:0:0:29,31:1040,1084:-167.278,-84.5576,-75.8277,-83.0638,0,-73.7319	1/1:135:0,135,0:0:0:135,0:4818,0:-404.821,-40.6391,0,-404.821,-40.6391,-404.821	1/2:87:0,41,46:0:0:41,46:1452,1648:-226.586,-117.841,-105.498,-109.068,0,-95.2208	1/2:45:0,23,22:0:0:23,22:808,792:-124.884,-61.4641,-54.5404,-63.7605,0,-57.1378	1/1:56:0,56,0:0:0:56,0:1989,0:-172.829,-16.8577,0,-172.829,-16.8577,-172.829	1/2:113:0,58,55:0:0:58,55:2071,1947:-296.4,-141.133,-123.674,-155.591,0,-139.034	1/1:96:0,96,0:0:0:96,0:3396,0:-283.795,-28.8989,0,-283.795,-28.8989,-283.795	1/2:67:0,28,39:0:0:28,39:965,1384:-180.995,-106.224,-97.7953,-75.1035,0,-63.3633	1/2:82:0,40,42:0:0:40,42:1421,1469:-223.788,-112.759,-100.718,-111.365,0,-98.7221	1/1:48:0,48,0:0:0:48,0:1699,0:-145.61,-14.4494,0,-145.61,-14.4494,-145.61	1/1:49:0,49,0:0:0:49,0:1726,0:-144.855,-14.7505,0,-144.855,-14.7505,-144.855	1/1:42:0,42,0:0:0:42,0:1471,0:-124.818,-12.6433,0,-124.818,-12.6433,-124.818	1/1:21:0,21,0:0:0:21,0:756,0:-64.4851,-6.32163,0,-64.4851,-6.32163,-64.4851	1/2:161:0,77,84:0:0:77,84:2737,2969:-444.741,-228.679,-205.499,-216.402,0,-191.116	1/2:106:0,56,50:0:0:56,50:2007,1769:-289.176,-134.461,-117.603,-155.05,0,-139.999	1/1:165:0,165,0:0:0:165,0:5838,0:-516.218,-49.67,0,-516.218,-49.67,-516.218	1/2:77:1,41,35:1:32:41,35:1453,1256:-210.125,-94.8511,-84.0645,-114.152,0,-105.172	1/1:48:0,45,3:0:0:45,3:1607,108:-138.193,-13.5464,0,-129.949,-4.96416,-129.046	1/2:59:0,28,31:0:0:28,31:1004,1108:-163.287,-85.0063,-76.5774,-78.6217,0,-69.2898	1/1:235:0,234,0:0:0:234,0:8217,0:-728.681,-70.441,0,-728.681,-70.441,-728.681	1/1:137:0,137,0:0:0:137,0:4873,0:-418.332,-41.2411,0,-418.332,-41.2411,-418.332	1/2:32:0,21,11:0:0:21,11:733,396:-86.1134,-30.4361,-24.1145,-56.0116,0,-52.7003	1/1:212:0,212,0:0:0:212,0:7522,0:-663.883,-63.8184,0,-663.883,-63.8184,-663.883	1/1:158:0,155,3:0:0:155,3:5519,108:-474.572,-46.6597,0,-466.567,-38.3238,-465.663	1/1:53:0,53,0:0:0:53,0:1855,0:-163,-15.9546,0,-163,-15.9546,-163	1/1:23:0,23,0:0:0:23,0:828,0:-71.7929,-6.92369,0,-71.7929,-6.92369,-71.7929	1/1:12:0,12,0:0:0:12,0:428,0:-37.304,-3.61236,0,-37.304,-3.61236,-37.304	1/1:5:0,5,0:0:0:5,0:169,0:-14.3877,-1.50515,0,-14.3877,-1.50515,-14.3877	1/1:1:0,1,0:0:0:1,0:36,0:-3.3876,-0.30103,0,-3.3876,-0.30103,-3.3876	1/2:9:0,8,1:0:0:8,1:288,36:-25.0755,-2.94513,-0.536889,-22.4568,0,-22.1557	1/1:216:0,215,1:0:0:215,1:7619,32:-670.762,-64.7215,0,-668.203,-61.8437,-667.902	1/1:116:0,115,1:0:0:115,1:4111,36:-354.65,-34.6185,0,-351.842,-31.465,-351.541	1/2:47:0,31,16:0:0:31,16:1080,576:-122.392,-41.1138,-31.7819,-81.5974,0,-76.7809	2/2:3:0,0,3:0:0:0,3:0,108:-9.48528,-9.48528,-9.48528,-0.90309,-0.90309,0	1/2:209:0,123,86:0:0:123,86:4338,3052:-565.275,-229.962,-192.936,-335.645,0,-309.756	1/1:24:0,24,0:0:0:24,0:855,0:-74.3972,-7.22472,0,-74.3972,-7.22472,-74.3972	1/2:108:0,52,56:0:0:52,56:1850,1985:-295.305,-150.885,-135.232,-144.758,0,-127.9	1/2:65:1,33,31:1:36:33,31:1126,1112:-169.452,-80.7316,-73.7336,-86.0599,0,-79.6638	1/2:70:0,31,39:0:0:31,39:1108,1364:-193.454,-105.541,-96.2089,-88.2553,0,-76.5151	1/1:90:0,89,1:0:0:89,1:3161,36:-279.257,-26.7917,0,-276.389,-23.5717,-276.088	1/1:68:0,67,1:0:0:67,1:2352,36:-196.433,-20.169,0,-193.685,-17.0824,-193.384	1/2:165:0,82,83:0:0:82,83:2932,2955:-461.275,-228.888,-204.204,-232.731,0,-207.745	1/1:104:0,103,1:0:0:103,1:3665,36:-321.52,-31.0061,0,-318.652,-27.7861,-318.351	1/1:123:0,123,0:0:0:123,0:4388,0:-383.788,-37.0267,0,-383.788,-37.0267,-383.788	1/1:56:0,56,0:0:0:56,0:1962,0:-173.182,-16.8577,0,-173.182,-16.8577,-173.182	1/2:11:0,5,6:0:0:5,6:180,212:-31.2465,-16.9017,-15.3966,-14.6915,0,-12.8853	1/2:117:0,61,56:0:0:61,56:2166,1999:-304.754,-143.555,-125.192,-161.521,0,-144.663	1/2:71:0,30,41:0:0:30,41:1073,1468:-198.706,-113.639,-104.609,-85.4113,0,-73.0691	1/1:18:0,18,0:0:0:18,0:635,0:-54.1262,-5.41854,0,-54.1262,-5.41854,-54.1262	1/2:112:0,44,68:0:0:44,68:1568,2427:-303.53,-184.225,-170.98,-119.639,0,-99.1692	1/2:30:0,15,15:0:0:15,15:512,540:-82.201,-42.4656,-37.9502,-40.072,0,-3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chr07	25902950	.	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chr07	25943913	.	G	C	41564.3	PASS	AB=0.522388;ABP=23.7203;AC=44;AF=0.234043;AN=188;AO=2507;CIGAR=1X;DP=11397;DPB=11397;DPRA=1.07333;EPP=5446.89;EPPR=19264;GTI=1;LEN=1;MEANALT=1.10909;MQM=59.9888;MQMR=59.9998;NS=94;NUMALT=1;ODDS=4.43778;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88328;QR=313079;RO=8878;RPL=2507;RPP=5446.89;RPPR=19272.7;RPR=0;RUN=1;SAF=2507;SAP=5446.89;SAR=0;SRF=8877;SRP=19272.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:27,15:27:927:15:491:-31.6128,0,-70.8499	0/1:123:68,55:68:2417:55:1936:-137.487,0,-180.758	0/1:110:57,53:57:2033:53:1896:-137.805,0,-150.127	0/0:391:390,0:390:13827:0:0:0,-117.402,-1243.95	0/0:140:138,2:138:4898:2:72:0,-35.3075,-434.133	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.538	0/1:154:85,69:85:3036:69:2429:-172.505,0,-227.112	0/0:190:188,2:188:6552:2:72:0,-50.359,-582.926	0/1:186:97,89:97:3422:89:3182:-230.611,0,-252.2	0/1:196:82,114:82:2917:114:4036:-304.426,0,-203.763	0/0:38:38,0:38:1330:0:0:0,-11.4391,-119.996	0/1:115:53,62:53:1856:62:2133:-157.614,0,-132.699	0/0:99:99,0:99:3450:0:0:0,-29.802,-310.709	0/1:73:36,37:36:1265:37:1303:-95.5954,0,-92.1754	0/1:100:56,44:56:1974:44:1528:-107.705,0,-147.828	0/0:56:56,0:56:1981:0:0:0,-16.8577,-178.563	0/0:110:109,1:109:3883:1:21:0,-31.0134,-347.566	0/0:56:56,0:56:1972:0:0:0,-16.8577,-177.753	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.184	0/1:243:123,120:123:4347:120:4270:-311.327,0,-318.255	0/1:202:95,107:95:3340:107:3746:-276.533,0,-240.007	0/0:171:171,0:171:6022:0:0:0,-51.4761,-542.086	0/1:144:65,78:65:2298:78:2769:-206.172,0,-163.799	0/0:197:192,5:192:6764:5:171:0,-43.5775,-593.107	0/1:98:59,39:59:2063:39:1391:-95.9873,0,-156.435	0/0:420:418,2:418:14671:2:72:0,-119.596,-1313.31	0/0:256:256,0:256:8990:0:0:0,-77.0637,-809.086	0/1:49:27,22:27:956:22:784:-56.1334,0,-71.6053	0/0:329:329,0:329:11548:0:0:0,-99.0389,-1039.2	0/0:162:162,0:162:5767:0:0:0,-48.7669,-519.143	0/0:164:163,1:163:5779:1:36:0,-45.7706,-516.628	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:17:17,0:17:581:0:0:0,-5.11751,-52.6105	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:290:290,0:290:10237:0:0:0,-87.2987,-921.267	0/0:218:217,0:217:7587:0:0:0,-65.3235,-682.605	0/1:60:28,32:28:951:32:1126:-83.5848,0,-67.8315	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:235:114,121:114:4015:121:4277:-314.367,0,-290.795	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/1:198:81,116:81:2859:116:4098:-309.492,0,-198.03	0/1:95:47,48:47:1680:48:1711:-125.677,0,-122.889	0/1:89:35,54:35:1233:54:1891:-143.674,0,-84.4804	0/0:149:149,0:149:5216:0:0:0,-44.8535,-469.577	0/0:79:79,0:79:2795:0:0:0,-23.7814,-251.786	0/1:227:122,105:122:4311:105:3649:-260.278,0,-319.833	0/0:160:159,1:159:5618:1:21:0,-46.0649,-503.644	0/0:157:156,1:156:5520:1:27:0,-44.5619,-494.226	0/0:160:159,0:159:5584:0:0:0,-47.8638,-502.321	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/1:87:48,39:48:1709:39:1348:-95.4242,0,-127.904	0/1:91:44,47:44:1569:47:1656:-121.933,0,-114.106	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:150:57,93:57:2010:93:3297:-251.795,0,-136.015	0/1:56:28,28:28:989:28:992:-72.7367,0,-72.4643	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:15:15,0:15:517:0:0:0,-4.51545,-46.8546	0/0:72:71,1:71:2540:1:21:0,-19.5742,-226.751	0/0:115:115,0:115:4056:0:0:0,-34.6184,-365.226	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:204:204,0:204:7183:0:0:0,-61.4101,-646.529	0/0:153:151,2:151:5352:2:72:0,-39.2209,-474.975	0/1:108:53,55:53:1832:55:1953:-143.532,0,-132.642	0/0:107:106,0:106:3746:0:0:0,-31.9092,-337.12	0/0:202:201,1:201:7045:1:32:0,-57.6087,-630.916	0/1:65:15,50:15:536:50:1772:-140.196,0,-29.0079	0/1:30:18,12:18:636:12:424:-29.4655,0,-48.5371	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965	0/1:127:55,71:55:1948:71:2489:-186.11,0,-137.444	0/1:28:10,18:10:360:18:644:-49.8618,0,-24.3155	0/0:133:133,0:133:4651:0:0:0,-40.037,-418.751	0/0:93:93,0:93:3278:0:0:0,-27.9958,-295.238	0/1:203:92,111:92:3243:111:3881:-288.373,0,-230.98	0/1:215:88,126:88:3079:126:4477:-338.468,0,-212.703	0/1:177:88,88:88:3144:88:3065:-222.856,0,-229.964	0/0:140:140,0:140:4969:0:0:0,-42.1442,-447.359	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:139:138,1:138:4871:1:36:0,-38.2449,-434.947	0/0:224:223,0:223:7846:0:0:0,-67.1297,-705.927	0/0:234:234,0:234:8209:0:0:0,-70.441,-738.827	0/0:117:116,0:116:4090:0:0:0,-34.9195,-367.926	0/1:53:22,31:22:758:31:1099:-83.2649,0,-52.5796	0/1:133:67,66:67:2381:66:2332:-170.101,0,-174.509	0/1:235:106,129:106:3754:129:4524:-336.588,0,-267.318	0/1:55:27,28:27:941:28:995:-73.3074,0,-68.445	0/0:97:97,0:97:3449:0:0:0,-29.1999,-310.623	0/0:111:111,0:111:3910:0:0:0,-33.4143,-352.093	0/1:28:17,11:17:608:11:387:-26.7371,0,-46.6232	0/1:77:40,37:40:1413:37:1302:-94.3005,0,-104.286	0/1:79:22,57:22:784:57:2032:-159.371,0,-47.1025	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:131:131,0:131:4605:0:0:0,-39.4349,-414.614
chr07	26009776	.	A	G	119032	PASS	AB=0.432449;ABP=134.441;AC=144;AF=0.765957;AN=188;AO=5619;CIGAR=1X;DP=7524;DPB=7524;DPRA=0;EPP=12178.5;EPPR=4139.67;GTI=1;LEN=1;MEANALT=1;MQM=59.5499;MQMR=59.4;NS=94;NUMALT=1;ODDS=1.41484;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200442;QR=68263;RO=1905;RPL=5616;RPP=12178.5;RPPR=4139.67;RPR=3;RUN=1;SAF=0;SAP=12204.5;SAR=5619;SRF=0;SRP=4139.67;SRR=1905;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:17,15:17:608:15:540:-39.3036,0,-45.4109	0/1:79:26,53:26:932:53:1904:-147.818,0,-59.964	0/1:167:98,69:98:3520:69:2459:-171.093,0,-266.592	1/1:126:0,126:0:0:126:4456:-401.19,-37.9298,0	1/1:39:0,39:0:0:39:1392:-125.444,-11.7402,0	1/1:29:0,29:0:0:29:1038:-93.7127,-8.72987,0	0/1:71:32,39:32:1152:39:1387:-103.74,0,-82.6077	1/1:98:0,98:0:0:98:3481:-313.439,-29.5009,0	0/1:81:37,44:37:1328:44:1558:-116.109,0,-95.3199	0/1:68:41,27:41:1472:27:968:-66.9658,0,-112.301	1/1:93:0,93:0:0:93:3312:-298.288,-27.9958,0	0/1:105:43,62:43:1531:62:2210:-167.512,0,-106.46	1/1:71:0,71:0:0:71:2548:-229.35,-21.3731,0	0/1:82:43,39:43:1548:39:1391:-100.797,0,-114.799	0/1:65:20,45:20:720:45:1612:-125.707,0,-45.5618	1/1:63:0,63:0:0:63:2247:-202.483,-18.9649,0	1/1:47:0,47:0:0:47:1688:-152.176,-14.1484,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:45:0,45:0:0:45:1596:-143.894,-13.5464,0	0/1:85:42,43:42:1508:43:1533:-112.674,0,-110.42	0/1:118:75,43:75:2683:43:1528:-102.287,0,-206.139	1/1:89:0,89:0:0:89:3174:-285.853,-26.7917,0	0/1:109:59,50:59:2116:50:1796:-129.108,0,-157.894	1/1:51:2,49:2:72:49:1760:-151.833,-8.51581,0	0/1:64:28,36:28:999:36:1284:-96.5815,0,-70.954	1/1:132:0,132:0:0:132:4711:-423.346,-39.736,0	1/1:205:0,205:0:0:205:7287:-655.801,-61.7112,0	0/1:42:19,23:19:684:23:810:-60.5678,0,-49.2343	1/1:200:0,200:0:0:200:7119:-640.73,-60.206,0	1/1:166:5,161:5:180:161:5771:-502.753,-33.4189,0	1/1:150:0,150:0:0:150:5354:-481.81,-45.1545,0	1/1:5:0,5:0:0:5:176:-16.1803,-1.50515,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.1298	1/1:174:0,174:0:0:174:6204:-558.443,-52.3792,0	1/1:58:0,58:0:0:58:2071:-186.644,-17.4597,0	0/1:54:21,33:21:747:33:1184:-90.5882,0,-51.2905	0/1:13:4,9:4:140:9:324:-25.5925,0,-8.86871	0/1:143:75,68:75:2679:68:2419:-174.875,0,-197.503	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:153:90,63:90:3205:63:2251:-156.753,0,-242.577	0/1:36:17,19:17:608:19:673:-50.0329,0,-44.2126	0/1:33:13,20:13:468:20:712:-54.4727,0,-32.4389	1/1:70:0,70:0:0:70:2495:-224.6,-21.0721,0	1/1:132:0,132:0:0:132:4721:-424.989,-39.736,0	0/1:144:98,46:98:3499:46:1613:-101.919,0,-271.756	1/1:80:0,80:0:0:80:2852:-256.909,-24.0824,0	1/1:45:0,45:0:0:45:1604:-144.641,-13.5464,0	1/1:99:0,99:0:0:99:3532:-318.079,-29.802,0	0/0:13:12,1:12:432:1:36:0,-0.315115,-35.6202	1/1:73:1,72:1:36:72:2552:-226.077,-18.3769,0	0/1:80:46,34:46:1652:34:1215:-85.5606,0,-124.88	1/1:13:0,13:0:0:13:453:-41.0986,-3.91339,0	0/1:145:85,60:85:3048:60:2139:-149.103,0,-230.859	0/1:41:27,14:27:972:14:496:-32.6191,0,-75.4533	1/1:9:0,9:0:0:9:324:-29.504,-2.70927,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:80:0,80:0:0:80:2859:-257.547,-24.0824,0	1/1:143:0,143:0:0:143:5132:-461.322,-43.0473,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2891	1/1:119:0,119:0:0:119:4233:-381.141,-35.8226,0	1/1:71:2,69:2:72:69:2456:-214.433,-14.5364,0	0/1:50:26,24:26:936:24:864:-63.0307,0,-69.508	1/1:67:0,67:0:0:67:2404:-216.609,-20.169,0	1/1:129:1,128:1:36:128:4564:-407.299,-35.2346,0	0/1:225:173,52:173:6216:52:1868:-100.651,0,-491.518	0/1:58:32,26:32:1143:26:924:-66.0124,0,-85.6364	1/1:50:0,50:0:0:50:1772:-158.788,-15.0515,0	0/1:56:30,26:30:1076:26:928:-66.9806,0,-80.2952	0/1:24:6,18:6:216:18:644:-51.0617,0,-12.1894	1/1:144:0,144:0:0:144:5140:-462.708,-43.3483,0	1/1:92:0,92:0:0:92:3283:-295.644,-27.6948,0	0/1:117:66,51:66:2363:51:1820:-128.851,0,-177.065	0/1:135:101,34:101:3620:34:1196:-67.3033,0,-285.131	0/1:128:96,32:96:3443:32:1148:-65.098,0,-271.332	1/1:61:0,61:0:0:61:2179:-196.374,-18.3628,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:30:0,30:0:0:30:1080:-97.5086,-9.0309,0	1/1:82:0,82:0:0:82:2904:-261.381,-24.6845,0	1/1:258:0,258:0:0:258:9211:-828.534,-77.6657,0	1/1:48:0,48:0:0:48:1728:-155.803,-14.4494,0	0/1:57:32,25:32:1148:25:900:-64.1576,0,-86.3825	0/1:49:37,12:37:1328:12:419:-23.2921,0,-105.065	0/1:96:52,44:52:1868:44:1584:-113.952,0,-138.846	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2267	1/1:87:0,87:0:0:87:3107:-279.555,-26.1896,0	1/1:67:0,67:0:0:67:2395:-215.722,-20.169,0	0/1:66:36,30:36:1288:30:1080:-77.6325,0,-96.3372	0/1:127:65,62:65:2319:62:2202:-160.078,0,-170.422	0/1:53:38,15:38:1356:15:517:-30.8999,0,-106.384	1/1:86:0,86:0:0:86:3051:-273.703,-25.8886,0	1/1:115:0,115:0:0:115:4114:-370.434,-34.6185,0
chr07	26009782	.	GTTA	GTTG,ATTG	163961	PASS	AB=0.428869,0.568452;ABP=150.673,139.761;AC=144,44;AF=0.765957,0.234043;AN=188;AO=5633,1932;CIGAR=3M1X,1X2M1X;DP=7581;DPB=7581;DPRA=0,1.00132;EPP=12217.5,4198.29;EPPR=0;GTI=1;LEN=1,4;MEANALT=1.67021,2.21277;MQM=59.5477,59.3452;MQMR=0;NS=94;NUMALT=2;ODDS=0.868019;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=201893,68316;QR=0;RO=0;RPL=5631,1932;RPP=12217.5,4198.29;RPPR=0;RPR=2,0;RUN=1,1;SAF=0,0;SAP=12234.9,4198.29;SAR=5633,1932;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,15,17:0:0:15,17:540,604:-93.6285,-49.5651,-45.0496,-44.4211,0,-39.3036	1/2:81:0,54,25:0:0:54,25:1944,856:-227.013,-69.5199,-53.2643,-157.543,0,-150.017	1/2:172:0,70,102:0:0:70,102:2508,3620:-498.589,-295.183,-274.111,-203.762,0,-173.057	1/1:126:0,126,0:0:0:126,0:4520,0:-406.862,-37.9298,0,-406.862,-37.9298,-406.862	1/1:39:0,39,0:0:0:39,0:1400,0:-126.164,-11.7402,0,-126.164,-11.7402,-126.164	1/1:30:0,30,0:0:0:30,0:1076,0:-97.0834,-9.0309,0,-97.0834,-9.0309,-97.0834	1/2:71:0,39,32:0:0:39,32:1400,1131:-206.569,-92.4555,-80.7154,-114.469,0,-104.837	1/1:97:0,97,0:0:0:97,0:3472,0:-312.572,-29.1999,0,-312.572,-29.1999,-312.572	1/2:82:0,44,38:0:0:44,38:1575,1355:-238.897,-110.578,-97.3328,-128.676,0,-117.236	1/2:70:0,27,43:0:0:27,43:972,1529:-204.159,-124.847,-116.719,-79.6701,0,-66.7258	1/1:95:0,95,0:0:0:95,0:3412,0:-307.279,-28.5979,0,-307.279,-28.5979,-307.279	1/2:105:0,62,43:0:0:62,43:2215,1518:-304.492,-123.953,-105.289,-180.893,0,-167.949	1/1:70:0,70,0:0:0:70,0:2498,0:-224.859,-21.0721,0,-224.859,-21.0721,-224.859	1/2:84:0,39,45:0:0:39,45:1400,1591:-243.984,-129.79,-118.05,-114.55,0,-101.003	1/2:66:0,46,20:0:0:46,20:1652,710:-192.747,-58.2053,-44.3579,-134.898,0,-128.878	1/1:64:0,64,0:0:0:64,0:2300,0:-207.241,-19.2659,0,-207.241,-19.2659,-207.241	1/1:46:0,46,0:0:0:46,0:1656,0:-149.298,-13.8474,0,-149.298,-13.8474,-149.298	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6759,-8.42884,0,-90.6759,-8.42884,-90.6759	1/1:45:0,45,0:0:0:45,0:1616,0:-145.688,-13.5464,0,-145.688,-13.5464,-145.688	1/2:86:0,43,43:0:0:43,43:1532,1535:-250.358,-125.489,-112.544,-125.226,0,-112.282	1/2:120:0,44,76:0:0:44,76:1580,2712:-350.27,-221.392,-208.146,-129.237,0,-106.359	1/1:89:0,89,0:0:0:89,0:3169,0:-285.383,-26.7917,0,-285.383,-26.7917,-285.383	1/2:111:0,50,61:0:0:50,61:1800,2150:-322.219,-175.347,-160.295,-147.228,0,-128.866	1/1:51:0,49,2:0:0:49,2:1760,68:-158.329,-14.7505,0,-152.814,-8.89482,-152.212	1/2:65:0,36,29:0:0:36,29:1292,1033:-189.917,-84.5471,-73.71,-105.727,0,-96.9975	1/1:133:0,132,0:0:0:132,0:4732,0:-425.617,-39.736,0,-425.617,-39.736,-425.617	1/1:205:0,205,0:0:0:205,0:7360,0:-662.373,-61.7112,0,-662.373,-61.7112,-662.373	1/2:43:0,24,18:0:0:24,18:864,648:-123.344,-52.8607,-45.636,-70.4829,0,-65.0643	1/1:197:0,197,0:0:0:197,0:7063,0:-635.666,-59.3029,0,-635.666,-59.3029,-635.666	1/1:168:0,163,5:0:0:163,5:5837,173:-524.895,-49.0679,0,-510.837,-34.6637,-509.332	1/1:148:0,147,0:0:0:147,0:5272,0:-474.202,-44.2514,0,-474.202,-44.2514,-474.202	1/1:5:0,5,0:0:0:5,0:180,0:-16.5474,-1.50515,0,-16.5474,-1.50515,-16.5474	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:22:0,8,14:0:0:8,14:288,500:-64.609,-41.1086,-38.7004,-23.8592,0,-19.6447	1/1:175:0,175,0:0:0:175,0:6288,0:-565.995,-52.6803,0,-565.995,-52.6803,-565.995	1/1:57:0,57,0:0:0:57,0:2052,0:-184.933,-17.1587,0,-184.933,-17.1587,-184.933	1/2:54:0,33,21:0:0:33,21:1188,754:-158.768,-61.8571,-51.9231,-97.2701,0,-90.9485	1/2:13:0,9,4:0:0:9,4:324,135:-37.459,-11.0015,-8.29228,-26.7966,0,-25.5925	1/2:145:0,68,76:0:0:68,76:2431,2673:-415.071,-216.892,-196.422,-198.281,0,-175.403	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/2:154:0,63,91:0:0:63,91:2268,3210:-446.713,-261.695,-242.73,-185.375,0,-157.981	1/2:36:0,18,18:0:0:18,18:648,637:-105.009,-52.2237,-46.8051,-53.1422,0,-47.7236	1/2:33:0,20,13:0:0:20,13:720,443:-95.0181,-36.258,-30.2374,-59.1082,0,-55.1948	1/1:71:0,70,0:0:0:70,0:2516,0:-226.186,-21.0721,0,-226.186,-21.0721,-226.186	1/1:133:0,133,0:0:0:133,0:4769,0:-429.298,-40.037,0,-429.298,-40.037,-429.298	1/2:146:0,46,100:0:0:46,100:1648,3540:-422.449,-288.695,-274.848,-134.109,0,-104.006	1/1:79:0,79,0:0:0:79,0:2810,0:-253.133,-23.7814,0,-253.133,-23.7814,-253.133	1/1:45:0,45,0:0:0:45,0:1616,0:-145.716,-13.5464,0,-145.716,-13.5464,-145.716	1/1:100:0,100,0:0:0:100,0:3576,0:-322.035,-30.103,0,-322.035,-30.103,-322.035	2/2:13:0,1,12:0:0:1,12:36,430:-38.6782,-35.7406,-35.4396,-3.61236,-0.315115,0	1/1:72:0,72,0:0:0:72,0:2569,0:-231.152,-21.6742,0,-231.152,-21.6742,-231.152	1/2:80:0,34,46:0:0:34,46:1220,1625:-232.187,-132.684,-122.449,-99.8591,0,-86.0117	1/1:13:0,13,0:0:0:13,0:449,0:-40.7342,-3.91339,0,-40.7342,-3.91339,-40.7342	1/2:150:0,61,88:0:0:61,88:2166,3086:-427.646,-251.175,-232.812,-176.543,0,-150.052	1/2:41:0,13,27:0:0:13,27:468,964:-116.872,-78.6942,-74.7808,-38.2779,0,-30.1501	1/1:9:0,9,0:0:0:9,0:324,0:-29.504,-2.70927,0,-29.504,-2.70927,-29.504	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:80:0,80,0:0:0:80,0:2872,0:-258.716,-24.0824,0,-258.716,-24.0824,-258.716	1/1:142:0,142,0:0:0:142,0:5091,0:-457.61,-42.7463,0,-457.61,-42.7463,-457.61	1/2:14:0,5,9:0:0:5,9:180,318:-40.9382,-26.2487,-24.7436,-15.0469,0,-12.3376	1/1:119:0,118,0:0:0:118,0:4232,0:-380.689,-35.5215,0,-380.689,-35.5215,-380.689	1/1:72:0,70,2:0:0:70,2:2492,72:-224.144,-21.0721,0,-218.269,-14.8374,-217.667	1/2:50:0,24,26:0:0:24,26:856,918:-144.891,-75.1094,-67.8847,-70.136,0,-62.3092	1/1:67:0,67,0:0:0:67,0:2412,0:-217.329,-20.169,0,-217.329,-20.169,-217.329	1/1:129:0,127,1:0:0:127,1:4560,36:-410.029,-38.2308,0,-407.092,-35.2435,-406.791	1/2:227:0,52,175:0:0:52,175:1864,6167:-654.331,-502.319,-486.665,-152.369,0,-99.6892	1/2:58:0,27,31:0:0:27,31:963,1106:-168.932,-90.4373,-82.3095,-78.8512,0,-69.5192	1/1:49:0,49,0:0:0:49,0:1750,0:-156.81,-14.7505,0,-156.81,-14.7505,-156.81	1/2:57:0,27,30:0:0:27,30:972,1031:-163.382,-84.0645,-75.9366,-79.6701,0,-70.6392	1/2:24:0,18,6:0:0:18,6:648,211:-70.2409,-17.366,-11.9474,-53.2264,0,-51.4202	1/1:149:0,149,0:0:0:149,0:5341,0:-480.78,-44.8535,0,-480.78,-44.8535,-480.78	1/1:92:0,92,0:0:0:92,0:3286,0:-295.92,-27.6948,0,-295.92,-27.6948,-295.92	1/2:117:0,50,66:0:0:50,66:1786,2325:-334.733,-189.119,-174.067,-145.687,0,-125.819	1/2:136:0,34,102:0:0:34,102:1216,3630:-395.031,-295.878,-285.643,-99.5097,0,-68.8046	1/2:128:0,34,94:0:0:34,94:1224,3325:-370.834,-270.96,-260.725,-100.232,0,-71.9352	1/1:63:0,62,0:0:0:62,0:2232,0:-200.874,-18.6639,0,-200.874,-18.6639,-200.874	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1482,-9.0309,0,-97.1482,-9.0309,-97.1482	1/1:84:0,84,0:0:0:84,0:3012,0:-271.048,-25.2865,0,-271.048,-25.2865,-271.048	1/1:258:0,258,0:0:0:258,0:9259,0:-832.586,-77.6657,0,-832.586,-77.6657,-832.586	1/1:50:0,50,0:0:0:50,0:1787,0:-161.11,-15.0515,0,-161.11,-15.0515,-161.11	1/2:60:0,27,33:0:0:27,33:956,1174:-173.805,-95.9447,-87.8169,-78.2149,0,-68.2809	1/2:51:0,13,38:0:0:13,38:468,1353:-147.706,-109.518,-105.605,-38.5453,0,-27.1062	1/2:96:0,44,52:0:0:44,52:1576,1844:-278.575,-150.045,-136.8,-128.886,0,-113.232	1/2:25:0,11,14:0:0:11,14:396,493:-72.7944,-40.4793,-37.168,-32.6714,0,-28.457	1/1:86:0,86,0:0:0:86,0:3084,0:-277.755,-25.8886,0,-277.755,-25.8886,-277.755	1/1:68:0,68,0:0:0:68,0:2440,0:-219.611,-20.47,0,-219.611,-20.47,-219.611	1/2:66:0,29,37:0:0:29,37:1044,1322:-193.294,-108.121,-99.3908,-85.5321,0,-74.394	1/2:128:0,61,65:0:0:61,65:2174,2282:-362.723,-185.547,-167.184,-177.2,0,-157.633	1/2:55:0,14,41:0:0:14,41:500,1443:-158.585,-117.82,-113.606,-41.1199,0,-28.7777	1/1:88:0,87,0:0:0:87,0:3105,0:-278.522,-26.1896,0,-278.522,-26.1896,-278.522	1/1:115:0,115,0:0:0:115,0:4124,0:-371.289,-34.6185,0,-371.289,-34.6185,-371.289
chr07	26042315	.	G	T	221216	PASS	AB=0.499394;ABP=3.02609;AC=144;AF=0.774194;AN=186;AO=10294;CIGAR=1X;DP=12801;DPB=12801;DPRA=0;EPP=22321.4;EPPR=5414.33;GTI=2;LEN=1;MEANALT=1.06452;MQM=59.9544;MQMR=59.9936;NS=93;NUMALT=1;ODDS=3.87956;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=366593;QR=89228;RO=2500;RPL=10290;RPP=22321.4;RPPR=5414.33;RPR=4;RUN=1;SAF=10294;SAP=22356.1;SAR=0;SRF=2500;SRP=5431.69;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:17,35:17:612:35:1244:-96.6111,0,-39.7599	0/1:205:121,84:121:4339:84:2995:-208.071,0,-328.973	0/1:167:72,95:72:2572:95:3386:-254.682,0,-181.458	1/1:292:0,292:0:0:292:10415:-937.273,-87.9008,0	1/1:79:0,79:0:0:79:2823:-254.309,-23.7814,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:198:113,85:113:4029:85:3034:-213.685,0,-303.194	1/1:265:1,264:1:36:264:9412:-843.4,-76.1747,0	0/1:134:62,72:62:2223:72:2572:-191.392,0,-159.995	0/1:152:66,86:66:2364:86:3048:-228.775,0,-167.262	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:79:44,35:44:1546:35:1238:-87.9415,0,-115.649	1/1:74:0,74:0:0:74:2639:-237.749,-22.2762,0	0/1:109:57,52:57:2027:52:1853:-134.236,0,-149.89	0/1:91:58,33:58:2080:33:1167:-77.9427,0,-160.077	1/1:69:1,68:1:36:68:2425:-214.907,-17.1728,0	1/1:86:0,86:0:0:86:3051:-274.82,-25.8886,0	1/1:83:0,83:0:0:83:2936:-264.474,-24.9855,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:261:108,153:108:3884:153:5476:-414.388,0,-271.184	0/1:156:72,84:72:2580:84:2991:-222.462,0,-185.489	1/1:138:0,138:0:0:138:4920:-442.951,-41.5421,0	0/1:195:91,104:91:3247:104:3732:-277.379,0,-233.751	1/1:198:10,188:10:360:188:6695:-569.838,-26.8596,0	0/1:126:69,57:69:2456:57:2036:-145.582,0,-183.365	1/1:601:0,601:0:0:601:21340:-1920.08,-180.919,0	1/1:248:1,247:1:36:247:8796:-788.022,-71.0572,0	0/1:47:28,19:28:1008:19:684:-47.7419,0,-76.8879	1/1:327:0,327:0:0:327:11669:-1050.04,-98.4368,0	1/1:226:0,226:0:0:226:8035:-723.17,-68.0328,0	1/1:185:0,185:0:0:185:6581:-592.327,-55.6906,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:231:0,231:0:0:231:8247:-742.237,-69.5379,0	1/1:252:0,250:0:0:250:8910:-801.48,-75.2575,0	0/1:43:21,22:21:752:22:792:-58.6614,0,-55.062	.:.:.:.:.:.:.:.	0/1:197:101,96:101:3615:96:3419:-248.622,0,-266.252	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:203:103,100:103:3659:100:3555:-259.048,0,-268.407	0/1:106:53,53:53:1882:53:1904:-139.729,0,-137.748	0/1:82:39,43:39:1400:43:1535:-113.753,0,-101.615	1/1:197:0,197:0:0:197:7036:-633.302,-59.3029,0	1/1:203:0,203:0:0:203:7224:-650.216,-61.1091,0	0/1:324:153,171:153:5455:171:6084:-450.084,0,-393.547	1/1:178:0,178:0:0:178:6358:-572.31,-53.5833,0	1/1:179:0,178:0:0:178:6318:-568.309,-53.5833,0	1/1:282:0,282:0:0:282:10011:-900.914,-84.8905,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:141:0,141:0:0:141:5025:-452.396,-42.4452,0	0/1:84:38,46:38:1351:46:1625:-121.25,0,-96.6031	1/1:27:0,27:0:0:27:943:-85.1832,-8.12781,0	0/1:156:84,72:84:2999:72:2582:-185.624,0,-223.181	0/1:87:37,50:37:1328:50:1777:-134.021,0,-93.6326	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:31:0,31:0:0:31:1089:-98.3182,-9.33193,0	1/1:96:0,96:0:0:96:3397:-305.946,-28.8989,0	1/1:141:0,140:0:0:140:5019:-451.495,-42.1442,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:323:0,323:0:0:323:11495:-1034.41,-97.2327,0	1/1:391:1,390:1:36:390:13919:-1248.89,-114.104,0	0/1:159:66,93:66:2340:93:3321:-251.243,0,-162.994	1/1:99:1,98:1:36:98:3504:-311.973,-26.2037,0	1/1:286:3,283:3:104:283:10069:-896.346,-76.3918,0	0/1:172:126,46:126:4482:46:1608:-93.2293,0,-351.715	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	1/1:120:0,120:0:0:120:4293:-386.542,-36.1236,0	0/1:114:55,59:55:1972:59:2112:-156.032,0,-143.437	0/1:18:5,13:5:180:13:464:-36.679,0,-11.1335	1/1:151:0,151:0:0:151:5351:-481.726,-45.4555,0	1/1:99:0,99:0:0:99:3529:-317.819,-29.802,0	0/1:179:90,89:90:3207:89:3155:-230.292,0,-234.969	0/1:198:87,111:87:3120:111:3954:-296.448,0,-221.422	0/1:104:50,54:50:1796:54:1922:-141.948,0,-130.615	1/1:157:0,156:0:0:156:5523:-496.84,-46.9607,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:161:0,161:0:0:161:5737:-516.448,-48.4658,0	1/1:132:0,132:0:0:132:4707:-423.734,-39.736,0	1/1:293:0,293:0:0:293:10431:-938.637,-88.2018,0	1/1:134:2,132:2:72:132:4700:-416.324,-33.5013,0	0/1:88:46,42:46:1632:42:1499:-108.713,0,-120.675	0/1:128:52,76:52:1859:76:2732:-207.59,0,-129.057	0/1:205:111,93:111:3928:93:3299:-235.358,0,-291.942	0/1:76:36,40:36:1283:40:1424:-105.579,0,-92.8943	1/1:94:0,94:0:0:94:3341:-300.908,-28.2968,0	1/1:94:0,94:0:0:94:3371:-303.605,-28.2968,0	0/1:31:15,16:15:527:16:563:-41.6672,0,-38.4283	0/1:79:36,43:36:1279:43:1488:-110.426,0,-91.6311	0/1:114:77,37:77:2747:37:1324:-85.1447,0,-213.155	1/1:159:0,159:0:0:159:5700:-513.117,-47.8638,0	1/1:148:2,145:2:72:145:5096:-451.961,-37.7479,0
chr07	26043502	.	TTGGT	CTGGT	71882.3	PASS	AB=0.516626;ABP=6.90932;AC=144;AF=0.765957;AN=188;AO=3341;CIGAR=1X4M;DP=4185;DPB=4184.8;DPRA=5.71566;EPP=7240.54;EPPR=1755.4;GTI=1;LEN=1;MEANALT=1.30769;MQM=59.9698;MQMR=60;NS=94;NUMALT=1;ODDS=1.54637;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119583;QR=27671;RO=811;RPL=2;RPP=7240.54;RPPR=1755.4;RPR=3339;RUN=1;SAF=0;SAP=7257.9;SAR=3341;SRF=0;SRP=1764.07;SRR=811;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:4,12:4:143:12:432:-34.4047,0,-8.40496	0/1:16:7,9:7:244:9:324:-24.6894,0,-17.483	0/1:60:33,26:33:1135:26:936:-66.4389,0,-84.3347	1/1:69:0,68:0:0:68:2440:-219.554,-20.47,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:28:11,17:11:381:17:612:-46.9846,0,-26.1934	1/1:61:0,57:0:0:57:2029:-182.528,-17.1587,0	0/1:44:14,30:14:475:30:1053:-81.8333,0,-29.8278	0/1:52:24,28:24:817:28:1004:-75.0223,0,-58.1885	1/1:22:0,22:0:0:22:786:-71.0641,-6.62266,0	0/1:51:21,29:21:707:29:1044:-78.9117,0,-48.5802	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	0/1:35:16,19:16:556:19:680:-50.9931,0,-39.8306	0/1:65:32,33:32:1085:33:1179:-86.8503,0,-78.3865	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:34:0,34:0:0:34:1215:-109.656,-10.235,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:65:34,31:34:1135:31:1112:-80.8244,0,-82.8826	0/1:98:53,45:53:1782:45:1620:-116.589,0,-131.155	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	0/1:45:18,27:18:623:27:963:-73.4396,0,-42.8478	1/1:27:1,24:1:30:24:864:-75.0578,-4.83778,0	0/1:15:7,8:7:223:8:288:-21.752,0,-15.8661	1/1:86:0,86:0:0:86:3053:-275,-25.8886,0	1/1:89:0,87:0:0:87:3128:-281.464,-26.1896,0	0/1:30:14,16:14:489:16:568:-42.421,0,-35.3097	1/1:131:0,130:0:0:130:4668:-420.009,-39.1339,0	1/1:37:2,35:2:62:35:1256:-107.457,-5.24991,0	1/1:29:0,28:0:0:28:995:-89.4815,-8.42884,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1386	1/1:111:0,110:0:0:110:3940:-354.482,-33.1133,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:35:17,18:17:584:18:644:-47.7545,0,-42.3474	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:54:27,27:27:931:27:972:-71.5423,0,-67.846	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:36:14,22:14:497:22:777:-59.4133,0,-34.228	0/1:43:19,24:19:644:24:842:-63.139,0,-45.3333	0/1:47:24,23:24:827:23:819:-59.8832,0,-60.5972	1/1:43:0,42:0:0:42:1504:-135.295,-12.6433,0	1/1:27:1,26:1:36:26:932:-80.6006,-4.52954,0	0/1:80:52,27:52:1772:27:964:-62.9838,0,-135.669	1/1:53:0,52:0:0:52:1864:-167.68,-15.6536,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:54:0,54:0:0:54:1931:-174.066,-16.2556,0	0/0:8:8,0:8:268:0:0:0,-2.40824,-24.4463	1/1:41:0,40:0:0:40:1436:-129.236,-12.0412,0	0/0:15:15,0:15:513:0:0:0,-4.51545,-46.4946	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:57:23,31:23:787:31:1112:-83.776,0,-54.5319	0/1:11:5,6:5:173:6:216:-16.4792,0,-12.5982	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:73:0,73:0:0:73:2611:-235.237,-21.9752,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:137:0,136:0:0:136:4888:-439.76,-40.9401,0	1/1:83:4,77:4:144:77:2768:-236.05,-11.423,0	0/1:27:14,13:14:489:13:468:-34.3318,0,-36.2131	1/1:44:0,44:0:0:44:1562:-140.87,-13.2453,0	1/1:79:0,79:0:0:79:2825:-254.487,-23.7814,0	0/1:44:24,20:24:821:20:720:-51.8835,0,-60.9589	0/1:32:12,20:12:407:20:716:-55.1348,0,-27.3228	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	0/1:21:14,7:14:483:7:252:-16.7073,0,-37.476	0/1:13:4,9:4:118:9:324:-25.5925,0,-6.99937	1/1:36:1,35:1:35:35:1256:-109.847,-7.33845,0	1/1:60:0,59:0:0:59:2112:-189.989,-17.7608,0	0/1:60:30,30:30:1030:30:1072:-78.7307,0,-74.9444	0/1:132:67,64:67:2296:64:2291:-166.735,0,-167.185	0/1:15:10,5:10:346:5:180:-11.9908,0,-26.9581	1/1:102:0,102:0:0:102:3643:-328.075,-30.7051,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:66:0,65:0:0:65:2312:-207.815,-19.567,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:151:0,150:0:0:150:5374:-483.43,-45.1545,0	1/1:39:0,38:0:0:38:1360:-122.341,-11.4391,0	0/1:59:34,25:34:1168:25:896:-63.1996,0,-87.6601	0/1:44:14,30:14:487:30:1076:-83.9075,0,-30.9147	0/1:71:27,44:27:918:44:1580:-121.118,0,-61.5554	0/1:13:6,7:6:205:7:252:-19.1156,0,-14.8715	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	0/1:15:7,8:7:245:8:288:-21.752,0,-17.8752	0/1:54:20,34:20:681:34:1215:-93.4001,0,-45.3522	0/1:35:21,13:21:667:13:468:-31.9482,0,-49.8222	1/1:110:1,106:1:36:106:3776:-336.459,-28.9651,0	1/1:77:0,77:0:0:77:2759:-248.551,-23.1793,0
chr07	26067067	.	A	G	123576	PASS	AB=0.515597;ABP=8.90341;AC=143;AF=0.760638;AN=188;AO=5576;CIGAR=1X;DP=6940;DPB=6940;DPRA=74.6129;EPP=12111.1;EPPR=2947.53;GTI=4;LEN=1;MEANALT=1.04301;MQM=59.7439;MQMR=59.8838;NS=94;NUMALT=1;ODDS=1.7276;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198838;QR=48646;RO=1360;RPL=94;RPP=11308.4;RPPR=2651.8;RPR=5482;RUN=1;SAF=94;SAP=11308.4;SAR=5482;SRF=35;SRP=2660.03;SRR=1325;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3467	0/1:66:38,28:38:1364:28:1004:-70.8079,0,-103.189	0/1:70:32,38:32:1143:38:1368:-102.348,0,-82.0999	1/1:128:0,128:0:0:128:4562:-410.518,-38.5318,0	1/1:37:1,36:1:36:36:1292:-112.98,-7.53984,0	1/1:13:0,13:0:0:13:459:-41.644,-3.91339,0	0/1:51:22,29:22:792:29:1040:-78.5614,0,-56.2527	1/1:100:3,97:3:108:97:3450:-300.58,-20.0278,0	0/1:76:40,36:40:1432:36:1296:-94.0508,0,-106.299	0/1:79:33,46:33:1176:46:1637:-123.835,0,-82.366	1/1:41:0,41:0:0:41:1472:-132.505,-12.3422,0	0/1:90:50,40:50:1788:40:1424:-101.348,0,-134.11	1/1:85:0,85:0:0:85:3017:-271.674,-25.5876,0	0/1:73:41,32:41:1463:32:1146:-81.4723,0,-109.212	0/1:66:34,32:34:1216:32:1133:-82.4079,0,-89.8786	1/1:65:1,64:1:36:64:2304:-203.949,-15.9687,0	1/1:42:0,42:0:0:42:1490:-134.377,-12.6433,0	1/1:55:0,55:0:0:55:1963:-176.934,-16.5567,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:131:55,76:55:1957:76:2720:-205.604,0,-136.967	0/1:146:98,48:98:3528:48:1728:-111.852,0,-273.776	1/1:48:0,48:0:0:48:1716:-154.722,-14.4494,0	0/1:69:29,40:29:1023:40:1419:-107.234,0,-71.6107	0/1:93:11,82:11:396:82:2944:-237.189,0,-7.98696	0/1:54:18,36:18:648:36:1288:-99.907,0,-42.3963	1/1:301:0,301:0:0:301:10668:-959.995,-90.61,0	1/1:163:0,163:0:0:163:5818:-523.714,-49.0679,0	0/1:35:18,17:18:625:17:603:-44.0636,0,-46.0358	1/1:163:0,163:0:0:163:5806:-522.208,-49.0679,0	1/1:93:0,93:0:0:93:3344:-301.164,-27.9958,0	1/1:63:0,63:0:0:63:2240:-201.754,-18.9649,0	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:9:0,9:0:0:9:324:-29.5043,-2.70927,0	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:225:0,225:0:0:225:8042:-723.793,-67.7318,0	1/1:170:0,170:0:0:170:6058:-545.312,-51.1751,0	0/1:53:31,22:31:1096:22:788:-55.014,0,-82.992	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:93:37,56:37:1328:56:1986:-150.945,0,-91.8234	1/1:31:0,31:0:0:31:1116:-100.747,-9.33193,0	0/1:75:36,39:36:1278:39:1373:-101.289,0,-92.716	0/1:58:22,36:22:777:36:1292:-99.124,0,-52.7902	0/1:68:30,38:30:1065:38:1359:-102.139,0,-75.6893	1/1:53:2,51:2:72:51:1812:-156.522,-9.11787,0	1/1:55:0,54:0:0:54:1926:-173.25,-16.2556,0	0/1:81:40,41:40:1440:41:1476:-108.752,0,-105.514	1/1:64:1,63:1:36:63:2217:-196.148,-15.6676,0	1/1:104:0,104:0:0:104:3690:-332.094,-31.3071,0	1/1:187:0,187:0:0:187:6692:-602.331,-56.2926,0	0/1:14:6,8:6:212:8:288:-22.0522,0,-15.2104	1/1:88:0,88:0:0:88:3123:-281.285,-26.4906,0	0/1:60:17,43:17:612:43:1539:-120.741,0,-37.3516	1/1:15:0,15:0:0:15:536:-48.5715,-4.51545,0	0/1:85:37,47:37:1332:47:1653:-123.406,0,-94.536	0/1:44:23,21:23:828:21:752:-54.7609,0,-61.5988	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:78:0,77:0:0:77:2745:-246.849,-23.1793,0	1/1:119:0,119:0:0:119:4263:-383.829,-35.8226,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:210:0,210:0:0:210:7455:-670.918,-63.2163,0	1/1:140:1,139:1:36:139:4987:-445.358,-38.5459,0	0/1:60:39,21:39:1404:21:756:-50.3039,0,-108.597	1/1:42:0,42:0:0:42:1487:-134.123,-12.6433,0	1/1:136:0,136:0:0:136:4815:-433.499,-40.9401,0	0/1:77:47,30:47:1683:30:1080:-74.3324,0,-128.575	0/1:20:13,7:13:468:7:252:-17.0001,0,-36.439	1/1:56:0,56:0:0:56:1987:-178.941,-16.8577,0	0/1:69:27,42:27:963:42:1486:-113.262,0,-66.2149	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:79:0,79:0:0:79:2798:-252.008,-23.7814,0	1/1:47:0,47:0:0:47:1675:-151.016,-14.1484,0	0/1:108:59,49:59:2091:49:1739:-124.089,0,-155.946	0/1:114:63,51:63:2260:51:1832:-130.843,0,-169.33	0/1:49:26,23:26:932:23:824:-59.6878,0,-69.445	1/1:78:0,78:0:0:78:2793:-251.032,-23.4803,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:54:0,54:0:0:54:1916:-172.522,-16.2556,0	1/1:65:0,65:0:0:65:2306:-207.638,-19.567,0	1/1:102:0,102:0:0:102:3652:-328.869,-30.7051,0	1/1:83:0,83:0:0:83:2979:-267.768,-24.9855,0	0/1:65:32,33:32:1152:33:1180:-86.9374,0,-84.4232	0/1:74:40,34:40:1423:34:1205:-86.4769,0,-106.09	0/1:151:70,81:70:2516:81:2903:-216.034,0,-181.235	0/1:47:24,23:24:860:23:828:-60.6924,0,-63.5643	1/1:72:0,72:0:0:72:2572:-231.712,-21.6742,0	1/1:74:0,74:0:0:74:2619:-235.833,-22.2762,0	0/1:40:22,18:22:792:18:631:-45.0698,0,-59.5614	0/1:89:39,50:39:1391:50:1784:-134.05,0,-98.6904	0/1:46:26,20:26:936:20:716:-50.9187,0,-70.7117	1/1:105:0,105:0:0:105:3755:-337.618,-31.6082,0	1/1:123:0,122:0:0:122:4358:-392.025,-36.7257,0
chr07	26067076	.	C	T	24629.3	PASS	AB=0.485194;ABP=8.34718;AC=45;AF=0.239362;AN=188;AO=1370;CIGAR=1X;DP=6958;DPB=6958;DPRA=0.776593;EPP=2773.12;EPPR=11340.7;GTI=4;LEN=1;MEANALT=1;MQM=59.881;MQMR=59.7543;NS=94;NUMALT=1;ODDS=1.53895;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49146;QR=199706;RO=5587;RPL=51;RPP=2551.44;RPPR=10785.1;RPR=1319;RUN=1;SAF=27;SAP=2748.03;SAR=1343;SRF=67;SRP=11560.1;SRR=5520;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:9,16:9:324:16:576:-44.6459,0,-21.9801	0/1:62:29,33:29:1044:33:1180:-87.8408,0,-75.6109	0/1:67:36,31:36:1296:31:1092:-78.4113,0,-96.774	0/0:129:129,0:129:4617:0:0:0,-38.8329,-415.463	0/0:38:37,1:37:1328:1:36:0,-7.84086,-116.209	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2579	0/1:51:29,22:29:1044:22:792:-56.2527,0,-78.9219	0/0:88:85,3:85:3022:3:108:0,-16.4155,-262.078	0/1:76:36,40:36:1296:40:1440:-107.019,0,-94.0508	0/1:80:46,34:46:1643:34:1220:-86.0236,0,-124.075	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.384	0/1:94:42,52:42:1493:52:1868:-140.102,0,-106.349	0/0:85:85,0:85:3028:0:0:0,-25.5875,-272.663	0/1:74:33,41:33:1184:41:1476:-110.082,0,-84.589	0/1:67:31,36:31:1097:36:1288:-96.0546,0,-78.8686	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.838	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.747	0/0:55:55,0:55:1948:0:0:0,-16.5566,-175.583	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7375	0/1:128:76,52:76:2713:52:1853:-128.515,0,-205.876	0/1:151:49,102:49:1749:102:3645:-282.796,0,-112.234	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.442	0/1:68:40,28:40:1425:28:1008:-70.5663,0,-108.073	0/1:92:81,11:81:2916:11:396:-8.28799,0,-234.979	0/1:54:36,18:36:1296:18:648:-42.3963,0,-100.685	0/0:306:306,0:306:10879:0:0:0,-92.1152,-978.97	0/0:165:165,0:165:5909:0:0:0,-49.6699,-531.9	0/1:35:16,19:16:572:19:684:-51.3527,0,-41.2774	0/0:165:165,0:165:5897:0:0:0,-49.6699,-530.394	0/0:95:95,0:95:3420:0:0:0,-28.5978,-308	0/0:63:63,0:63:2230:0:0:0,-18.9649,-200.836	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5043	0/1:8:2,6:2:72:6:201:-16.0088,0,-4.42848	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:2:1,1:1:21:1:36:-2.99621,0,-1.49789	0/0:223:223,0:223:8020:0:0:0,-67.1297,-721.811	0/0:176:176,0:176:6268:0:0:0,-52.9813,-564.2	0/1:52:21,31:21:756:31:1116:-85.0948,0,-52.6999	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:94:57,37:57:2036:37:1332:-91.8825,0,-155.182	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.625	0/1:76:38,38:38:1349:38:1368:-100.514,0,-98.83	0/1:60:36,24:36:1292:24:864:-60.0204,0,-98.5104	0/1:69:38,31:38:1360:31:1116:-79.9802,0,-101.929	0/0:52:50,2:50:1796:2:72:0,-8.81684,-155.086	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.667	0/1:81:39,42:39:1392:42:1512:-111.991,0,-101.195	0/0:62:61,1:61:2173:1:36:0,-15.0656,-192.217	0/0:105:105,0:105:3721:0:0:0,-31.6081,-334.884	0/0:186:186,0:186:6638:0:0:0,-55.9916,-597.472	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.0522	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.657	0/1:63:44,19:44:1584:19:680:-42.5643,0,-123.887	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9332	0/1:85:48,37:48:1720:37:1332:-94.5948,0,-129.493	0/1:43:21,22:21:741:22:788:-58.3005,0,-54.0673	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.221	0/0:78:78,0:78:2777:0:0:0,-23.4803,-250.087	0/0:118:118,0:118:4244:0:0:0,-35.5215,-382.119	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:213:213,0:213:7629:0:0:0,-64.1194,-686.567	0/0:144:142,2:142:5089:2:68:0,-36.8908,-451.673	0/1:64:21,43:21:756:43:1544:-119.987,0,-49.0998	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.014	0/0:139:139,0:139:4977:0:0:0,-41.8432,-448.067	0/1:80:32,48:32:1107:48:1715:-130.55,0,-75.8482	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9375	0/0:56:55,0:55:1976:0:0:0,-16.5566,-177.834	0/1:69:41,28:41:1453:28:1008:-70.2653,0,-110.293	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:81:81,0:81:2882:0:0:0,-24.3834,-259.518	0/0:46:46,0:46:1622:0:0:0,-13.8474,-146.244	0/1:109:49,60:49:1749:60:2155:-161.401,0,-124.24	0/1:113:51,62:51:1821:62:2232:-167.112,0,-130.152	0/1:48:24,24:24:864:24:864:-63.6298,0,-63.5881	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.144	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:58:58,0:58:2065:0:0:0,-17.4597,-185.925	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.739	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.069	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.312	0/1:63:33,30:33:1173:30:1080:-78.5484,0,-86.9021	0/1:73:34,39:34:1216:39:1385:-102.971,0,-87.7706	0/1:152:82,70:82:2943:70:2508:-180.215,0,-219.331	0/1:47:23,24:23:824:24:864:-63.925,0,-60.3316	0/0:72:72,0:72:2558:0:0:0,-21.6742,-230.45	0/0:74:74,0:74:2642:0:0:0,-22.2762,-237.906	0/1:39:17,22:17:612:22:792:-59.8624,0,-43.6729	0/1:90:52,38:52:1868:38:1368:-96.322,0,-141.305	0/1:46:20,26:20:716:26:936:-70.7117,0,-50.9187	0/0:106:106,0:106:3785:0:0:0,-31.9092,-340.536	0/0:124:124,0:124:4440:0:0:0,-37.3277,-399.758
chr07	26068474	.	C	G	215312	PASS	AB=0.516008;ABP=13.6468;AC=143;AF=0.768817;AN=186;AO=8095;CIGAR=1X;DP=10441;DPB=10441;DPRA=113.478;EPP=7.33688;EPPR=42.7563;GTI=1;LEN=1;MEANALT=1.05435;MQM=55.5169;MQMR=59.6826;NS=93;NUMALT=1;ODDS=4.18318;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284566;QR=82605;RO=2341;RPL=0;RPP=17581.1;RPPR=5069.07;RPR=8095;RUN=1;SAF=4111;SAP=7.33688;SAR=3984;SRF=1276;SRP=44.3072;SRR=1065;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:24,37:24:848:37:1308:-99.0411,0,-58.2084	0/1:124:59,65:59:2108:65:2296:-169.002,0,-152.661	0/1:132:73,59:73:2620:59:2080:-147.092,0,-196.181	1/1:126:0,126:0:0:126:4477:-401.39,-37.9298,0	1/1:68:1,67:1:36:67:2357:-208.445,-16.8718,0	1/1:40:0,40:0:0:40:1412:-126.968,-12.0412,0	0/1:103:39,64:39:1367:64:2263:-172.783,0,-92.3216	1/1:142:0,142:0:0:142:5040:-452.597,-42.7463,0	0/1:85:37,48:37:1307:48:1678:-124.42,0,-92.3428	0/1:110:59,51:59:2059:51:1796:-128.517,0,-152.462	1/1:124:0,124:0:0:124:4347:-390.932,-37.3277,0	0/1:215:100,115:100:3551:115:4112:-303.462,0,-255.004	1/1:149:0,149:0:0:149:5336:-478.884,-44.8535,0	0/1:203:78,125:78:2775:125:4388:-333.272,0,-188.84	0/1:181:92,89:92:3210:89:3087:-222.933,0,-234.62	1/1:113:0,113:0:0:113:3917:-351.997,-34.0164,0	1/1:135:1,134:1:36:134:4732:-421.277,-37.0408,0	1/1:101:0,101:0:0:101:3584:-322.025,-30.404,0	1/1:82:0,82:0:0:82:2920:-261.964,-24.6845,0	0/1:168:68,100:68:2366:100:3520:-265.89,0,-162.59	0/1:184:73,110:73:2584:110:3821:-287.921,0,-177.386	1/1:43:0,43:0:0:43:1532:-137.871,-12.9443,0	0/1:106:49,57:49:1751:57:1996:-147.708,0,-125.964	1/1:92:4,88:4:144:88:3031:-258.579,-14.3811,0	0/1:87:38,49:38:1356:49:1711:-127.567,0,-96.1284	1/1:187:0,187:0:0:187:6589:-592.046,-56.2926,0	1/1:266:0,266:0:0:266:9283:-832.394,-80.074,0	0/1:83:35,48:35:1236:48:1671:-125.013,0,-86.0651	1/1:211:0,211:0:0:211:7420:-666.654,-63.5173,0	1/1:82:1,81:1:36:81:2848:-252.516,-21.0862,0	1/1:88:0,88:0:0:88:3057:-274.029,-26.4906,0	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:288:-26.1911,-2.40824,0	0/1:2:1,1:1:32:1:36:-2.97671,0,-2.59725	1/1:7:0,7:0:0:7:237:-21.5873,-2.10721,0	0/1:10:5,5:5:176:5:176:-13.0957,0,-13.1747	1/1:376:0,376:0:0:376:13125:-1179.51,-113.187,0	1/1:87:0,87:0:0:87:3030:-272.554,-26.1896,0	0/1:117:45,72:45:1596:72:2541:-192.13,0,-108.71	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:82:35,47:35:1225:47:1648:-123.45,0,-85.8563	1/1:57:0,57:0:0:57:2015:-181.086,-17.1587,0	0/1:108:50,58:50:1761:58:2016:-148.646,0,-126.221	0/1:155:82,73:82:2889:73:2560:-183.627,0,-213.571	0/1:148:66,82:66:2298:82:2834:-209.972,0,-162.368	1/1:40:0,40:0:0:40:1408:-126.099,-12.0412,0	1/1:84:0,84:0:0:84:2993:-268.226,-25.2865,0	0/1:107:49,58:49:1695:58:2049:-152.132,0,-120.125	1/1:71:0,71:0:0:71:2493:-223.404,-21.3731,0	1/1:139:1,138:1:36:138:4834:-431.179,-38.2449,0	1/1:58:0,58:0:0:58:2027:-182.509,-17.4597,0	0/1:4:3,1:3:108:1:36:-2.3873,0,-8.87105	1/1:118:1,117:1:36:117:4134:-367.428,-31.9233,0	0/1:34:17,17:17:612:17:612:-45.1333,0,-45.1784	1/1:7:0,7:0:0:7:248:-22.575,-2.10721,0	0/1:98:55,43:55:1905:43:1525:-107.7,0,-142.142	0/1:23:13,10:13:464:10:351:-24.9718,0,-35.1676	1/1:4:0,4:0:0:4:144:-13.2999,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.72502,-0.60206,0	1/1:79:1,78:1:36:78:2714:-240.388,-20.1831,0	1/1:212:1,210:1:36:210:7300:-652.805,-60.2789,0	1/1:1:0,1:0:0:1:36:-3.59142,-0.30103,0	1/1:193:0,193:0:0:193:6795:-611.076,-58.0988,0	1/1:140:3,137:3:108:137:4826:-423.56,-32.069,0	0/1:85:45,40:45:1581:40:1404:-100.552,0,-116.991	1/1:53:0,53:0:0:53:1889:-170.042,-15.9546,0	1/1:125:4,121:4:144:121:4318:-374.787,-24.3151,0	0/1:131:93,38:93:3295:38:1364:-83.4333,0,-257.318	0/1:80:38,42:38:1347:42:1508:-110.876,0,-97.4349	1/1:82:0,82:0:0:82:2897:-259.794,-24.6845,0	0/1:156:88,68:88:3090:68:2398:-169.012,0,-231.37	0/1:21:12,9:12:428:9:324:-23.1452,0,-32.5372	1/1:77:0,77:0:0:77:2725:-243.249,-23.1793,0	1/1:123:2,120:2:72:120:4265:-375.573,-30.2487,0	0/1:145:68,77:68:2411:77:2655:-194.631,0,-173.597	0/1:180:83,97:83:2952:97:3430:-254.019,0,-211.723	0/1:62:20,42:20:708:42:1500:-116.275,0,-45.3639	1/1:181:0,181:0:0:181:6448:-577.426,-54.4864,0	1/1:4:0,4:0:0:4:144:-13.2595,-1.20412,0	1/1:94:0,94:0:0:94:3344:-300.448,-28.2968,0	1/1:74:0,74:0:0:74:2625:-235.481,-22.2762,0	1/1:129:2,127:2:72:127:4446:-392.565,-31.9961,0	1/1:160:0,159:0:0:159:5549:-498.855,-47.8638,0	0/1:161:83,78:83:2937:78:2696:-193.909,0,-216.08	0/1:164:77,87:77:2683:87:3042:-224.285,0,-192.347	0/1:308:144,164:144:5021:164:5687:-418.559,0,-359.258	0/1:73:38,35:38:1348:35:1240:-89.4704,0,-99.6275	1/1:144:0,144:0:0:144:5045:-453.162,-43.3483,0	1/1:160:0,160:0:0:160:5662:-508.199,-48.1648,0	0/1:95:51,44:51:1820:44:1576:-113.359,0,-135.42	0/1:216:104,112:104:3706:112:3930:-287.646,0,-268.677	0/1:172:123,49:123:4350:49:1744:-105.143,0,-339.85	1/1:220:1,218:1:36:218:7586:-677.429,-62.6868,0	1/1:303:5,298:5:165:298:10413:-920.57,-76.0385,0
chr07	26101358	.	GCT	ACT,ACC	275024	PASS	AB=0.463777,0.534282;ABP=55.8673,50.3557;AC=141,45;AF=0.758065,0.241935;AN=186;AO=9901,2516;CIGAR=1X2M,1X1M1X;DP=12441;DPB=12441;DPRA=33.7962,1.00922;EPP=20498.5,5217.45;EPPR=7.35324;GTI=3;LEN=1,3;MEANALT=1.79348,2.20755;MQM=59.9941,59.9762;MQMR=60;NS=93;NUMALT=2;ODDS=5.16577;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=352530,86930;QR=63;RO=2;RPL=118,29;RPP=20490,5217.45;RPPR=7.35324;RPR=9783,2487;RUN=1,1;SAF=1,0;SAP=21494.1,5466.43;SAR=9900,2516;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,18,22:0:0:18,22:648,769:-115.786,-62.9078,-57.4893,-53.2333,0,-46.6107	1/2:156:0,79,77:0:0:79,77:2793,2697:-447.271,-219.796,-196.015,-227.827,0,-204.647	1/2:132:0,65,67:0:0:65,67:2324,2329:-379.199,-189.699,-170.132,-189.853,0,-169.684	1/1:236:0,236,0:0:0:236,0:8376,0:-753.851,-71.0431,0,-753.851,-71.0431,-753.851	1/1:106:0,106,0:0:0:106,0:3784,0:-340.757,-31.9092,0,-340.757,-31.9092,-340.757	1/1:68:0,68,0:0:0:68,0:2408,0:-216.975,-20.47,0,-216.975,-20.47,-216.975	1/2:147:0,60,86:0:0:60,86:2140,2957:-414.572,-240.117,-222.055,-174.446,0,-148.558	1/1:145:0,145,0:0:0:145,0:5106,0:-459.684,-43.6494,0,-459.684,-43.6494,-459.684	1/2:87:0,45,42:0:0:45,42:1612,1468:-251.239,-119.769,-106.222,-131.824,0,-119.18	1/2:99:0,53,45:0:0:53,45:1891,1545:-279.594,-125.431,-109.476,-154.153,0,-140.607	1/1:77:0,77,0:0:0:77,0:2731,0:-246.034,-23.1793,0,-246.034,-23.1793,-246.034	1/2:85:0,35,50:0:0:35,50:1251,1753:-245.005,-143.001,-132.465,-102.358,0,-87.3067	1/1:65:0,64,1:0:0:64,1:2291,36:-206.091,-19.2659,0,-203.153,-15.9687,-202.852	1/2:131:0,49,82:0:0:49,82:1748,2832:-372.938,-230.436,-215.686,-142.854,0,-118.169	1/2:80:0,33,47:0:0:33,47:1171,1618:-227.17,-131.757,-121.823,-95.7627,0,-81.6143	1/1:67:0,67,0:0:0:67,0:2380,0:-214.456,-20.169,0,-214.456,-20.169,-214.456	1/1:86:0,86,0:0:0:86,0:3062,0:-275.809,-25.8886,0,-275.809,-25.8886,-275.809	1/1:58:0,58,0:0:0:58,0:2082,0:-187.65,-17.4597,0,-187.65,-17.4597,-187.65	1/1:54:0,54,0:0:0:54,0:1936,0:-174.516,-16.2556,0,-174.516,-16.2556,-174.516	1/2:388:0,188,199:0:0:188,199:6698,6916:-1108.21,-562.256,-505.662,-545.943,0,-486.038	1/2:169:0,86,83:0:0:86,83:3062,2816:-478.264,-228.691,-202.803,-249.92,0,-224.935	1/1:119:0,119,0:0:0:119,0:4227,0:-380.611,-35.8226,0,-380.611,-35.8226,-380.611	1/2:110:0,48,62:0:0:48,62:1716,2139:-314.037,-174.113,-159.664,-140.276,0,-121.612	1/1:171:0,162,8:0:0:162,8:5752,286:-517.448,-48.7669,0,-494.128,-25.3782,-491.72	1/2:82:0,41,41:0:0:41,41:1455,1403:-232.774,-114.22,-101.877,-118.903,0,-106.561	1/1:374:1,370,1:1:36:370,1:13190,28:-1183.38,-108.419,0,-1181.47,-109.164,-1184.1	1/1:221:0,221,0:0:0:221,0:7849,0:-706.44,-66.5276,0,-706.44,-66.5276,-706.44	1/2:36:0,17,19:0:0:17,19:612,668:-104.666,-54.7256,-49.6081,-50.2959,0,-44.5764	1/1:417:1,415,1:1:27:415,1:14776,36:-1326.84,-122.844,0,-1324.2,-121.945,-1326.03	1/1:363:0,363,0:0:0:363,0:12937,0:-1164.14,-109.274,0,-1164.14,-109.274,-1164.14	1/1:404:0,404,0:0:0:404,0:14387,0:-1294.59,-121.616,0,-1294.59,-121.616,-1294.59	.:.:.:.:.:.:.:.	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	2/2:12:0,1,11:0:0:1,11:36,357:-32.0866,-29.1462,-28.8452,-3.31133,-0.0140851,0	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:10:0,3,7:0:0:3,7:104,236:-27.9165,-19.4604,-18.5573,-8.79971,0,-6.6925	1/1:208:0,207,0:0:0:207,0:7345,0:-660.85,-62.3132,0,-660.85,-62.3132,-660.85	1/1:332:0,330,0:0:0:330,0:11766,0:-1058.44,-99.3399,0,-1058.44,-99.3399,-1058.44	1/2:93:0,43,50:0:0:43,50:1540,1734:-266.884,-141.288,-128.344,-125.949,0,-110.897	2/2:4:0,0,4:0:0:0,4:0,142:-13.1292,-13.1292,-13.1292,-1.20412,-1.20412,0	1/2:171:0,83,87:0:0:83,87:2968,2961:-482.246,-240.227,-215.241,-242.065,0,-215.875	1/1:48:0,48,0:0:0:48,0:1720,0:-155.086,-14.4494,0,-155.086,-14.4494,-155.086	1/2:148:0,67,81:0:0:67,81:2382,2812:-423.054,-228.937,-208.768,-194.468,0,-170.084	1/2:82:0,42,40:0:0:42,40:1481,1350:-230.34,-109.745,-97.1022,-120.939,0,-108.898	1/2:73:0,31,42:0:0:31,42:1099,1426:-205.528,-115.988,-106.656,-89.8875,0,-77.2443	1/1:140:0,140,0:0:0:140,0:4954,0:-446.012,-42.1442,0,-446.012,-42.1442,-446.012	1/1:126:0,126,0:0:0:126,0:4479,0:-403.279,-37.9298,0,-403.279,-37.9298,-403.279	1/2:131:0,66,65:0:0:66,65:2339,2200:-369.245,-178.692,-158.824,-190.9,0,-171.333	1/1:126:0,124,0:0:0:124,0:4455,0:-400.797,-37.3277,0,-400.797,-37.3277,-400.797	1/1:392:0,386,6:0:0:386,6:13705,207:-1232.89,-116.198,0,-1216.08,-99.0369,-1214.27	1/1:228:0,226,0:0:0:226,0:8065,0:-725.64,-68.0328,0,-725.64,-68.0328,-725.64	1/2:25:0,5,20:0:0:5,20:176,710:-72.533,-58.2056,-56.7004,-14.6799,0,-8.65927	1/1:190:0,190,0:0:0:190,0:6745,0:-607.125,-57.1957,0,-607.125,-57.1957,-607.125	1/2:70:0,28,42:0:0:28,42:978,1425:-195.447,-115.89,-107.461,-79.9023,0,-67.2591	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7925,-9.0309,0,-96.7925,-9.0309,-96.7925	1/2:283:0,125,158:0:0:125,158:4450,5494:-809.725,-447.034,-409.406,-363.043,0,-315.48	1/2:76:0,36,40:0:0:36,40:1292,1407:-220.275,-114.88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chr07	26101462	.	A	T	106927	PASS	AB=0.489596;ABP=5.40514;AC=143;AF=0.768817;AN=186;AO=4948;CIGAR=1X;DP=6256;DPB=6256;DPRA=0;EPP=10678.1;EPPR=2782.82;GTI=1;LEN=1;MEANALT=1;MQM=59.9905;MQMR=60;NS=93;NUMALT=1;ODDS=4.14441;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177123;QR=46907;RO=1308;RPL=8;RPP=10678.1;RPPR=2782.82;RPR=4940;RUN=1;SAF=4948;SAP=10747.5;SAR=0;SRF=1308;SRP=2843.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:22,17:22:788:17:608:-43.3119,0,-59.5046	0/1:56:24,32:24:860:32:1152:-87.1325,0,-60.8642	0/1:92:45,47:45:1612:47:1688:-124.512,0,-117.675	1/1:117:0,117:0:0:117:4186:-376.922,-35.2205,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:72:39,33:39:1381:33:1184:-85.1942,0,-102.913	1/1:87:2,85:2:72:85:3017:-264.922,-19.3529,0	0/1:65:38,27:38:1360:27:964:-67.5099,0,-103.134	0/1:85:40,45:40:1432:45:1596:-118.343,0,-103.59	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:91:44,47:44:1584:47:1688:-124.813,0,-115.458	1/1:74:0,74:0:0:74:2647:-238.473,-22.2762,0	0/1:64:43,21:43:1548:21:747:-48.2884,0,-120.347	0/1:55:30,25:30:1080:25:900:-64.7644,0,-80.9566	1/1:54:0,54:0:0:54:1925:-173.526,-16.2556,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:29:1,28:1:36:28:1000:-86.7171,-5.1316,0	0/1:94:33,61:33:1184:61:2192:-169.249,0,-78.5715	0/1:215:120,95:120:4300:95:3393:-240.862,0,-322.455	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	0/1:80:51,29:51:1836:29:1036:-69.4715,0,-141.438	0/1:62:8,54:8:288:54:1932:-155.493,0,-7.60355	0/1:42:14,28:14:504:28:993:-77.0392,0,-33.0548	1/1:187:0,187:0:0:187:6683:-601.545,-56.2926,0	1/1:152:0,152:0:0:152:5423:-488.201,-45.7566,0	0/1:30:13,17:13:468:17:608:-46.0211,0,-33.4287	1/1:158:1,157:1:36:157:5644:-504.479,-43.9645,0	1/1:110:0,110:0:0:110:3935:-354.342,-33.1133,0	1/1:85:0,85:0:0:85:3039:-273.74,-25.5876,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	.:.:.:.:.:.:.:.	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:19:16,3:16:572:3:108:-4.3556,0,-46.0939	1/1:153:0,153:0:0:153:5495:-494.674,-46.0576,0	1/1:104:1,103:1:36:103:3686:-328.344,-27.7088,0	0/1:59:32,27:32:1148:27:972:-70.0371,0,-85.8691	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:70:28,42:28:1000:42:1504:-114.582,0,-69.2433	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:81:28,53:28:1004:53:1890:-145.993,0,-66.2924	0/1:49:30,19:30:1080:19:670:-45.874,0,-82.7628	0/1:48:28,20:28:996:20:708:-49.5962,0,-75.5054	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:63:25,38:25:900:38:1352:-103.015,0,-62.3561	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	1/1:116:0,116:0:0:116:4164:-374.855,-34.9195,0	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:92:0,92:0:0:92:3312:-298.289,-27.6948,0	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:74:40,34:40:1436:34:1224:-88.1908,0,-107.261	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1277	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:17:0,17:0:0:17:604:-54.69,-5.11751,0	1/1:60:0,60:0:0:60:2139:-192.777,-18.0618,0	1/1:95:1,94:1:36:94:3368:-299.738,-24.9996,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:172:0,172:0:0:172:6164:-554.855,-51.7772,0	1/1:121:0,121:0:0:121:4332:-390.056,-36.4246,0	0/1:50:27,23:27:972:23:828:-59.7926,0,-72.7464	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:117:0,117:0:0:117:4191:-377.371,-35.2205,0	0/1:98:73,25:73:2594:25:896:-51.4594,0,-204.205	0/1:35:19,16:19:680:16:572:-41.2774,0,-50.9931	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:52:28,24:28:1008:24:864:-62.429,0,-75.3828	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	1/1:94:0,94:0:0:94:3367:-303.245,-28.2968,0	1/1:63:0,63:0:0:63:2252:-202.935,-18.9649,0	0/1:86:41,45:41:1472:45:1612:-119.481,0,-106.888	0/1:82:33,49:33:1184:49:1742:-132.38,0,-82.1839	0/1:52:20,32:20:716:32:1148:-87.9763,0,-49.1142	1/1:100:1,99:1:36:99:3556:-316.649,-26.5047,0	1/1:15:0,15:0:0:15:521:-47.2163,-4.51545,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:52:0,52:0:0:52:1853:-167.048,-15.6536,0	1/1:130:1,129:1:36:129:4617:-412.093,-35.5356,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	0/1:60:24,36:24:864:36:1281:-97.5295,0,-60.0208	0/1:42:20,22:20:720:22:788:-58.6015,0,-52.4855	0/1:99:52,47:52:1868:47:1673:-121.053,0,-138.597	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:64:0,64:0:0:64:2266:-204.199,-19.2659,0	0/1:30:19,11:19:684:11:396:-26.9518,0,-52.8594	0/1:76:47,29:47:1688:29:1040:-71.0361,0,-129.329	0/1:62:45,17:45:1612:17:608:-36.3882,0,-126.706	1/1:146:0,146:0:0:146:5224:-470.296,-43.9504,0	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0
chr07	26101493	.	C	T	106835	PASS	AB=0.495673;ABP=3.42375;AC=143;AF=0.768817;AN=186;AO=4977;CIGAR=1X;DP=6266;DPB=6266;DPRA=0;EPP=10810.4;EPPR=2802.04;GTI=1;LEN=1;MEANALT=1;MQM=59.9914;MQMR=60;NS=93;NUMALT=1;ODDS=3.51981;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177826;QR=45972;RO=1289;RPL=4977;RPP=10810.4;RPPR=2802.04;RPR=0;RUN=1;SAF=4977;SAP=10810.4;SAR=0;SRF=1289;SRP=2802.04;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:22,17:22:784:17:604:-42.9504,0,-59.1437	0/1:54:23,31:23:820:31:1108:-83.7754,0,-57.8669	0/1:91:44,47:44:1575:47:1680:-124.093,0,-114.647	1/1:118:0,118:0:0:118:4223:-380.25,-35.5215,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:75:39,36:39:1392:36:1288:-93.6463,0,-103.002	1/1:86:1,85:1:36:85:3028:-269.152,-22.2903,0	0/1:63:38,25:38:1364:25:892:-61.6348,0,-104.096	0/1:86:40,46:40:1436:46:1638:-121.819,0,-103.649	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:90:41,49:41:1455:49:1746:-130.331,0,-104.153	1/1:74:0,74:0:0:74:2652:-238.918,-22.2762,0	0/1:65:41,24:41:1476:24:851:-57.3425,0,-113.569	0/1:54:28,26:28:1004:26:927:-67.4917,0,-74.4202	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:32:0,32:0:0:32:1142:-103.089,-9.63296,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:30:1,29:1:36:29:1040:-90.3161,-5.43263,0	0/1:94:33,61:33:1184:61:2184:-168.529,0,-78.5715	0/1:212:117,95:117:4175:95:3375:-240.149,0,-312.115	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	0/1:82:51,31:51:1828:31:1112:-75.7069,0,-140.116	0/1:62:8,54:8:284:54:1936:-155.853,0,-7.23949	0/1:40:14,26:14:504:26:932:-72.1577,0,-33.6569	1/1:186:0,186:0:0:186:6641:-597.768,-55.9916,0	1/1:153:0,153:0:0:153:5450:-490.63,-46.0576,0	0/1:30:14,16:14:489:16:576:-43.1441,0,-35.308	1/1:160:1,159:1:36:159:5692:-508.8,-44.5665,0	1/1:112:0,112:0:0:112:4011:-361.178,-33.7154,0	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	.:.:.:.:.:.:.:.	1/1:13:0,13:0:0:13:450:-40.8298,-3.91339,0	0/1:19:16,3:16:563:3:108:-4.3556,0,-45.2796	1/1:158:0,158:0:0:158:5640:-507.72,-47.5627,0	1/1:104:1,103:1:36:103:3660:-326.006,-27.7088,0	0/1:59:32,27:32:1148:27:972:-70.0371,0,-85.8691	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:70:28,42:28:1000:42:1489:-113.23,0,-69.2433	1/1:27:0,27:0:0:27:956:-86.3557,-8.12781,0	0/1:82:28,54:28:986:54:1927:-149.022,0,-64.3677	0/1:49:29,20:29:1040:20:711:-49.5652,0,-79.1639	0/1:47:27,20:27:945:20:716:-50.6193,0,-71.2138	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:82:0,82:0:0:82:2925:-263.484,-24.6845,0	0/1:60:23,37:23:820:37:1328:-101.76,0,-56.0607	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	1/1:120:0,120:0:0:120:4290:-386.241,-36.1236,0	1/1:72:0,72:0:0:72:2560:-230.648,-21.6742,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:91:0,91:0:0:91:3268:-294.331,-27.3937,0	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:73:40,33:40:1431:33:1180:-84.5329,0,-107.112	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	1/1:10:0,10:0:0:10:358:-32.5629,-3.0103,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:95:1,94:1:32:94:3376:-300.856,-25.3985,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:171:0,171:0:0:171:6111:-550.089,-51.4761,0	1/1:123:0,123:0:0:123:4403:-396.442,-37.0267,0	0/1:51:28,23:28:1004:23:824:-59.1308,0,-75.3233	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:117:0,117:0:0:117:4212:-379.258,-35.2205,0	0/1:100:74,26:74:2644:26:936:-54.4565,0,-208.104	0/1:37:20,17:20:712:17:608:-43.9139,0,-53.2685	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:53:28,25:28:1004:25:891:-64.5542,0,-74.7213	0/1:16:11,5:11:388:5:180:-11.7356,0,-30.4409	1/1:92:0,92:0:0:92:3275:-294.971,-27.6948,0	1/1:60:0,60:0:0:60:2139:-192.777,-18.0618,0	0/1:90:42,48:42:1468:48:1728:-128.713,0,-105.319	0/1:81:32,49:32:1152:49:1747:-133.13,0,-79.6067	0/1:52:20,32:20:716:32:1152:-88.3366,0,-49.1142	1/1:98:1,97:1:36:97:3444:-306.574,-25.9027,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:130:1,129:1:36:129:4611:-411.556,-35.5356,0	1/1:62:0,62:0:0:62:2215:-199.614,-18.6639,0	0/1:62:25,37:25:892:37:1308:-99.3549,0,-61.9358	0/1:41:19,22:19:680:22:792:-59.2634,0,-49.1869	0/1:97:50,47:50:1775:47:1691:-123.277,0,-130.832	0/1:24:13,11:13:452:11:388:-28.0326,0,-33.7864	1/1:66:0,66:0:0:66:2334:-210.318,-19.868,0	1/1:60:0,60:0:0:60:2111:-190.256,-18.0618,0	0/1:30:19,11:19:684:11:396:-26.9518,0,-52.8594	0/1:75:45,30:45:1604:30:1063:-73.4036,0,-122.073	0/1:60:43,17:43:1514:17:612:-37.3516,0,-118.49	1/1:147:0,147:0:0:147:5237:-471.468,-44.2514,0	1/1:77:0,77:0:0:77:2759:-248.551,-23.1793,0
chr07	26103285	.	T	C	78483.2	PASS	AB=0.480874;ABP=9.40606;AC=145;AF=0.771277;AN=188;AO=3681;CIGAR=1X;DP=4732;DPB=4732;DPRA=0;EPP=7996.2;EPPR=2283.06;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9188;MQMR=59.9829;NS=94;NUMALT=1;ODDS=0.141393;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131441;QR=37424;RO=1050;RPL=3681;RPP=7996.2;RPPR=2283.06;RPR=0;RUN=1;SAF=0;SAP=7996.2;SAR=3681;SRF=0;SRP=2283.06;SRR=1050;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:8,20:8:284:20:720:-56.6999,0,-17.4745	0/1:40:20,20:20:716:20:705:-51.7332,0,-52.6703	0/1:52:29,23:29:1044:23:820:-58.469,0,-78.6212	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	1/1:37:0,37:0:0:37:1312:-118.377,-11.1381,0	0/1:68:39,29:39:1404:29:1040:-73.4381,0,-106.189	1/1:57:1,56:1:36:56:1987:-175.504,-13.5604,0	0/1:149:74,75:74:2588:75:2665:-195.241,0,-188.311	0/1:34:25,9:25:896:9:324:-19.2708,0,-70.7253	1/1:21:0,21:0:0:21:756:-68.361,-6.32163,0	0/1:45:23,22:23:828:22:788:-57.6984,0,-61.2978	1/1:39:0,39:0:0:39:1379:-124.408,-11.7402,0	0/1:33:20,13:20:716:13:468:-32.5257,0,-54.8337	0/1:26:12,14:12:423:14:504:-37.8713,0,-30.5783	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:82:39,43:39:1392:43:1544:-114.56,0,-100.895	0/1:74:33,41:33:1188:41:1472:-110.5,0,-84.9524	1/1:82:0,82:0:0:82:2942:-265.008,-24.6845,0	0/1:136:65,71:65:2332:71:2524:-186.47,0,-169.199	1/1:20:1,19:1:36:19:684:-58.2921,-2.42233,0	0/1:80:34,46:34:1205:46:1644:-124.162,0,-84.6715	1/1:127:0,127:0:0:127:4552:-409.846,-38.2308,0	1/1:167:0,167:0:0:167:5947:-535.332,-50.272,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:133:0,133:0:0:133:4761:-428.575,-40.037,0	1/1:87:1,86:1:36:86:3075:-273.379,-22.5913,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:8:0,8:0:0:8:282:-25.7211,-2.40824,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:76:0,76:0:0:76:2711:-244.234,-22.8783,0	1/1:82:0,82:0:0:82:2929:-263.84,-24.6845,0	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	0/1:5:1,4:1:21:4:144:-11.8085,0,-0.594796	0/1:53:23,30:23:816:30:1076:-81.1983,0,-57.8071	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	0/1:104:45,59:45:1597:59:2101:-158.047,0,-112.711	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:19:9,10:9:324:10:352:-26.2986,0,-23.7863	1/1:69:0,69:0:0:69:2478:-223.273,-20.7711,0	1/1:61:0,61:0:0:61:2176:-196.107,-18.3628,0	0/1:69:38,31:38:1348:31:1086:-77.2748,0,-100.849	1/1:44:0,44:0:0:44:1576:-142.131,-13.2453,0	1/1:45:0,45:0:0:45:1595:-143.646,-13.5464,0	1/1:108:0,108:0:0:108:3852:-346.837,-32.5112,0	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	1/1:80:0,80:0:0:80:2880:-259.436,-24.0824,0	0/1:40:28,12:28:1008:12:413:-25.4566,0,-78.9952	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:66:36,30:36:1277:30:1069:-75.9508,0,-95.3631	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:94:0,94:0:0:94:3368:-303.328,-28.2968,0	1/1:60:0,60:0:0:60:2148:-193.576,-18.0618,0	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	1/1:56:0,56:0:0:56:1992:-179.551,-16.8577,0	1/1:82:1,81:1:36:81:2901:-257.726,-21.0862,0	0/1:24:12,12:12:428:12:409:-29.9106,0,-31.6341	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:93:0,93:0:0:93:3321:-299.107,-27.9958,0	0/1:134:83,51:83:2946:51:1816:-123.383,0,-225.034	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6511	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:14:6,8:6:208:8:288:-22.053,0,-14.8447	1/1:107:0,107:0:0:107:3820:-343.995,-32.2102,0	1/1:70:0,70:0:0:70:2496:-224.891,-21.0721,0	0/1:106:46,60:46:1640:60:2140:-160.959,0,-115.979	0/1:97:50,47:50:1766:47:1688:-123.007,0,-130.019	0/1:63:41,22:41:1461:22:784:-51.919,0,-112.819	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:60:0,60:0:0:60:2144:-193.227,-18.0618,0	1/1:49:0,49:0:0:49:1748:-157.596,-14.7505,0	1/1:65:1,63:1:36:63:2229:-197.273,-16.0275,0	1/1:28:0,28:0:0:28:1000:-90.2588,-8.42884,0	0/1:29:18,11:18:648:11:392:-26.8902,0,-49.922	0/1:21:13,8:13:468:8:284:-19.5817,0,-36.138	0/1:61:30,31:30:1080:31:1103:-81.217,0,-79.1504	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:28:12,16:12:428:16:576:-43.7379,0,-30.43	0/1:46:23,23:23:828:23:819:-60.1842,0,-60.9967	0/1:40:26,14:26:924:14:473:-30.8498,0,-71.4365	1/1:70:0,70:0:0:70:2493:-224.622,-21.0721,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0
chr07	26113556	.	C	T	185780	PASS	AB=0.481963;ABP=11.7054;AC=141;AF=0.766304;AN=184;AO=6798;CIGAR=1X;DP=8407;DPB=8407;DPRA=23.0852;EPP=13.3598;EPPR=63.7791;GTI=2;LEN=1;MEANALT=1.03297;MQM=59.8754;MQMR=59.9421;NS=92;NUMALT=1;ODDS=6.5497;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240445;QR=57017;RO=1606;RPL=3489;RPP=13.3598;RPPR=63.7791;RPR=3309;RUN=1;SAF=0;SAP=14764.7;SAR=6798;SRF=0;SRP=3490.39;SRR=1606;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:28,26:28:1000:26:916:-66.5008,0,-74.0598	0/1:94:41,53:41:1442:53:1859:-139.129,0,-101.778	0/1:230:130,100:130:4626:100:3544:-249.93,0,-347.266	1/1:167:0,167:0:0:167:5919:-532.826,-50.272,0	1/1:75:1,73:1:36:73:2554:-226.555,-18.9629,0	1/1:34:0,34:0:0:34:1195:-107.854,-10.235,0	0/1:37:21,16:21:747:16:568:-40.3138,0,-56.4162	1/1:172:0,172:0:0:172:6108:-549.822,-51.7772,0	0/1:97:48,49:48:1720:49:1722:-126.044,0,-125.886	0/1:111:38,73:38:1344:73:2576:-198.515,0,-87.8431	1/1:40:0,40:0:0:40:1415:-127.647,-12.0412,0	0/1:86:48,38:48:1715:38:1368:-97.5322,0,-128.746	1/1:76:0,76:0:0:76:2697:-242.975,-22.8783,0	0/1:48:27,21:27:940:21:726:-51.1711,0,-70.2706	0/1:83:44,39:44:1584:39:1373:-98.8765,0,-117.866	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:55:0,55:0:0:55:1892:-170.553,-16.5567,0	1/1:43:0,43:0:0:43:1529:-137.901,-12.9443,0	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	0/1:207:106,101:106:3808:101:3565:-258.742,0,-280.603	0/1:121:72,49:72:2535:49:1712:-117.929,0,-191.978	1/1:163:0,163:0:0:163:5834:-525.167,-49.0679,0	0/1:43:14,29:14:496:29:1005:-77.8136,0,-32.03	1/1:127:3,124:3:108:124:4429:-388.706,-28.1556,0	0/1:74:37,37:37:1319:37:1320:-96.8257,0,-96.7349	1/1:244:0,244:0:0:244:8544:-768.338,-73.4513,0	1/1:257:0,257:0:0:257:9087:-817.813,-77.3647,0	0/1:35:19,16:19:684:16:572:-41.2774,0,-51.3543	1/1:295:0,295:0:0:295:10440:-939.472,-88.8039,0	1/1:101:0,101:0:0:101:3563:-320.881,-30.404,0	1/1:65:0,65:0:0:65:2258:-203.48,-19.567,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:177:1,176:1:27:176:6240:-558.978,-50.5825,0	1/1:204:1,203:1:36:203:7161:-640.952,-57.8118,0	0/1:81:38,43:38:1347:43:1523:-112.979,0,-97.146	.:.:.:.:.:.:.:.	0/1:120:54,66:54:1936:66:2305:-171.395,0,-138.393	1/1:22:0,22:0:0:22:784:-70.8833,-6.62266,0	0/1:108:48,60:48:1701:60:2132:-159.637,0,-120.863	0/1:75:36,39:36:1274:39:1380:-101.921,0,-92.3842	0/1:53:33,20:33:1180:20:712:-48.4521,0,-90.5535	1/1:92:0,92:0:0:92:3260:-293.621,-27.6948,0	1/1:150:0,150:0:0:150:5343:-481.004,-45.1545,0	0/1:127:58,69:58:2084:69:2452:-182.704,0,-149.599	1/1:139:0,139:0:0:139:4936:-444.39,-41.8432,0	1/1:144:0,144:0:0:144:5125:-461.391,-43.3483,0	1/1:153:0,153:0:0:153:5459:-491.44,-46.0576,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:121:0,121:0:0:121:4293:-386.549,-36.4246,0	0/1:10:4,6:4:144:6:197:-15.0419,0,-10.3033	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:96:55,41:55:1976:41:1460:-102.797,0,-149.216	0/1:45:16,29:16:561:29:1036:-80.0072,0,-37.2708	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:26:0,26:0:0:26:894:-80.7717,-7.82678,0	1/1:79:0,78:0:0:78:2698:-242.732,-23.4803,0	0/1:6:4,2:4:140:2:68:-4.65153,0,-11.1384	1/1:214:0,214:0:0:214:7640:-687.64,-64.4204,0	1/1:174:0,174:0:0:174:6081:-547.333,-52.3792,0	0/1:71:31,40:31:1108:40:1432:-107.804,0,-78.6579	1/1:84:0,84:0:0:84:2973:-267.803,-25.2865,0	1/1:141:0,140:0:0:140:4970:-447.092,-42.1442,0	0/1:83:55,28:55:1968:28:977:-63.2535,0,-152.405	0/1:16:10,6:10:345:6:203:-13.7847,0,-26.5643	1/1:103:0,103:0:0:103:3646:-328.344,-31.0061,0	0/1:64:33,31:33:1158:31:1116:-81.4858,0,-85.2591	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:68:0,68:0:0:68:2351:-211.844,-20.47,0	1/1:91:0,91:0:0:91:3233:-291.183,-27.3937,0	0/1:88:44,44:44:1564:44:1544:-112.631,0,-114.561	0/1:157:73,84:73:2609:84:2965:-219.821,0,-187.793	0/1:105:70,35:70:2436:35:1256:-81.729,0,-187.888	1/1:194:0,194:0:0:194:6899:-620.983,-58.3998,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:105:0,105:0:0:105:3729:-335.793,-31.6082,0	1/1:135:1,134:1:36:134:4775:-426.311,-37.0408,0	1/1:286:1,285:1:36:285:10089:-904.358,-82.4963,0	1/1:62:0,62:0:0:62:2139:-192.772,-18.6639,0	0/1:51:32,19:32:1148:19:672:-45.4543,0,-88.2773	0/1:66:31,35:31:1074:35:1239:-91.9465,0,-77.0985	0/1:140:86,54:86:3010:54:1907:-129.747,0,-228.988	0/1:33:20,13:20:680:13:446:-30.5324,0,-51.5576	1/1:71:0,71:0:0:71:2516:-226.491,-21.3731,0	1/1:72:0,72:0:0:72:2564:-231.003,-21.6742,0	0/1:27:17,10:17:612:10:352:-23.8904,0,-47.2856	0/1:54:25,29:25:864:29:1012:-74.9749,0,-61.6867	0/1:62:38,24:38:1355:24:841:-57.3421,0,-103.586	1/1:86:0,86:0:0:86:3022:-272.021,-25.8886,0	1/1:107:0,107:0:0:107:3797:-341.929,-32.2102,0
chr07	26321963	.	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chr07	26321987	.	G	A	54821.3	PASS	AB=0.305061;ABP=948.673;AC=143;AF=0.760638;AN=188;AO=2979;CIGAR=1X;DP=4976;DPB=4976;DPRA=53.4946;EPP=6463.14;EPPR=4326.41;GTI=13;LEN=1;MEANALT=1.06452;MQM=54.0289;MQMR=59.56;NS=94;NUMALT=1;ODDS=0.64428;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102081;QR=70374;RO=1991;RPL=2979;RPP=6471.83;RPPR=4326.41;RPR=0;RUN=1;SAF=2978;SAP=6463.14;SAR=1;SRF=1991;SRP=4326.41;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:16,17:16:567:17:596:-43.6687,0,-41.4185	0/1:82:63,19:63:2230:19:647:-33.117,0,-176.021	0/1:89:60,29:60:2115:29:968:-60.193,0,-163.811	1/1:47:1,46:1:36:46:1593:-139.864,-10.5501,0	1/1:29:0,29:0:0:29:999:-89.9023,-8.72987,0	1/1:17:0,17:0:0:17:592:-53.083,-5.11751,0	0/1:135:114,21:114:4054:21:698:-22.4553,0,-324.398	1/1:47:1,46:1:36:46:1571:-136.836,-10.5501,0	0/1:89:76,13:76:2695:13:425:-11.1424,0,-215.992	0/1:37:20,17:20:708:17:592:-42.3328,0,-52.9075	1/1:50:0,50:0:0:50:1715:-154.504,-15.0515,0	0/1:63:45,18:45:1564:18:595:-34.7084,0,-122.067	1/1:43:0,43:0:0:43:1493:-134.301,-12.9443,0	0/1:67:43,24:43:1511:24:805:-52.4986,0,-115.607	0/1:45:27,18:27:949:18:628:-43.258,0,-72.1739	1/1:31:0,31:0:0:31:1064:-95.9143,-9.33193,0	1/1:29:0,29:0:0:29:1003:-90.3295,-8.72987,0	1/1:19:0,19:0:0:19:659:-59.5034,-5.71957,0	1/1:31:0,31:0:0:31:1075:-96.3087,-9.33193,0	0/1:135:99,36:99:3552:36:1255:-72.4574,0,-279.239	0/1:92:63,29:63:2231:29:1012:-62.7727,0,-173.33	1/1:13:0,13:0:0:13:443:-40.1867,-3.91339,0	0/1:60:45,15:45:1588:15:523:-29.221,0,-125.138	0/1:65:6,59:6:216:59:2027:-162.546,0,-0.223562	0/1:73:60,12:60:2088:12:412:-15.4375,0,-166.248	1/1:141:1,140:1:36:140:4817:-429.624,-38.848,0	1/1:82:0,82:0:0:82:2821:-253.105,-24.6845,0	0/1:24:18,6:18:620:6:208:-11.8119,0,-48.8907	1/1:75:0,75:0:0:75:2577:-231.505,-22.5773,0	1/1:44:0,44:0:0:44:1503:-135.157,-13.2453,0	1/1:52:0,52:0:0:52:1790:-161.049,-15.6536,0	1/1:2:0,2:0:0:2:68:-6.44941,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.0382,-1.20412,0	0/1:3:1,2:1:36:2:72:-5.91644,0,-2.69518	1/1:5:0,5:0:0:5:164:-15.0622,-1.50515,0	0/1:19:12,7:12:432:7:252:-17.2458,0,-33.4934	1/1:96:0,96:0:0:96:3307:-297.637,-28.8989,0	1/1:97:0,96:0:0:96:3285:-294.839,-28.8989,0	0/1:67:37,30:37:1301:30:1039:-73.4564,0,-97.2088	0/1:5:4,1:4:144:1:36:-2.08802,0,-11.8085	0/1:88:66,22:66:2297:22:759:-41.9292,0,-180.216	1/1:28:0,28:0:0:28:945:-84.8811,-8.42884,0	0/1:102:78,24:78:2784:24:810:-42.4185,0,-220.087	0/1:56:40,16:40:1416:16:542:-32.2124,0,-110.872	0/1:57:44,13:44:1530:13:445:-23.1911,0,-120.83	1/1:58:0,58:0:0:58:1989:-179.142,-17.4597,0	1/1:31:0,31:0:0:31:1079:-96.4195,-9.33193,0	0/1:150:109,41:109:3879:41:1404:-81.0022,0,-304.039	1/1:42:0,42:0:0:42:1434:-128.894,-12.6433,0	1/1:48:0,48:0:0:48:1641:-147.792,-14.4494,0	1/1:61:0,61:0:0:61:2063:-185.829,-18.3628,0	0/1:10:6,4:6:216:4:132:-9.19092,0,-16.7802	1/1:61:0,61:0:0:61:2082:-186.645,-18.3628,0	0/1:36:24,11:24:856:11:375:-23.221,0,-66.5713	1/1:11:0,11:0:0:11:375:-34.0086,-3.31133,0	0/1:69:47,22:47:1665:22:764:-48.0756,0,-129.351	0/1:63:36,27:36:1284:27:902:-62.3599,0,-96.8962	1/1:1:0,1:0:0:1:32:-3.19891,-0.30103,0	1/1:15:0,15:0:0:15:524:-47.4781,-4.51545,0	1/1:30:0,30:0:0:30:1023:-92.1286,-9.0309,0	1/1:99:0,99:0:0:99:3364:-302.726,-29.802,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:48:0,48:0:0:48:1649:-148.1,-14.4494,0	1/1:81:0,81:0:0:81:2805:-251.994,-24.3834,0	0/1:63:51,12:51:1808:12:403:-17.5279,0,-143.891	1/1:17:0,17:0:0:17:581:-52.4707,-5.11751,0	1/1:72:1,71:1:36:71:2452:-217.084,-18.0759,0	0/1:52:31,20:31:1095:20:695:-47.1183,0,-83.143	0/1:33:24,9:24:856:9:290:-16.458,0,-67.4179	1/1:27:0,27:0:0:27:936:-84.2665,-8.12781,0	0/1:74:45,29:45:1583:29:997:-67.6253,0,-120.482	0/1:38:27,10:27:946:10:344:-19.8973,0,-74.0833	1/1:50:0,50:0:0:50:1701:-152.529,-15.0515,0	1/1:28:0,28:0:0:28:973:-87.6666,-8.42884,0	0/1:153:105,47:105:3735:47:1617:-99.5226,0,-290.152	0/1:71:51,20:51:1828:20:679:-40.0101,0,-142.778	0/1:59:37,22:37:1303:22:765:-51.1187,0,-99.7853	1/1:25:0,25:0:0:25:850:-76.6344,-7.52575,0	1/1:5:0,5:0:0:5:168:-15.4243,-1.50515,0	1/1:28:0,28:0:0:28:943:-84.9408,-8.42884,0	1/1:30:0,30:0:0:30:1031:-92.5932,-9.0309,0	1/1:67:0,67:0:0:67:2250:-202.543,-20.169,0	1/1:57:0,57:0:0:57:1918:-172.683,-17.1587,0	0/1:41:25,16:25:879:16:549:-37.3591,0,-67.0822	0/1:61:49,12:49:1739:12:411:-18.9331,0,-138.399	0/1:119:81,38:81:2833:38:1306:-81.7006,0,-219.363	0/1:29:14,15:14:492:15:519:-37.9812,0,-35.871	1/1:34:0,34:0:0:34:1168:-105.002,-10.235,0	1/1:33:0,33:0:0:33:1088:-97.9664,-9.93399,0	0/1:51:35,16:35:1236:16:542:-33.6893,0,-96.1823	0/1:146:102,44:102:3587:44:1530:-93.7964,0,-279.06	0/1:61:50,11:50:1746:11:387:-16.3478,0,-139.052	1/1:26:0,26:0:0:26:899:-81.0623,-7.82678,0	1/1:43:0,43:0:0:43:1478:-133.164,-12.9443,0
chr07	26321988	.	A	G	34994.3	PASS	AB=0.694844;ABP=943.134;AC=43;AF=0.228723;AN=188;AO=1993;CIGAR=1X;DP=5206;DPB=5206;DPRA=1.56916;EPP=4330.75;EPPR=6960.41;GTI=9;LEN=1;MEANALT=1.10204;MQM=59.5148;MQMR=54.0421;NS=94;NUMALT=1;ODDS=0.595964;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70370;QR=114366;RO=3208;RPL=1993;RPP=4330.75;RPPR=6969.09;RPR=0;RUN=1;SAF=1993;SAP=4330.75;SAR=0;SRF=3207;SRP=6960.41;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:17,16:17:608:16:568:-41.5097,0,-44.6032	0/1:84:21,63:21:748:63:2210:-173.839,0,-41.7188	0/1:88:30,58:30:1059:58:2063:-159.425,0,-68.611	0/0:53:52,1:52:1843:1:36:0,-12.3563,-162.168	0/0:30:30,0:30:1059:0:0:0,-9.0309,-95.2803	0/0:17:17,0:17:612:0:0:0,-5.11751,-54.8622	0/1:137:22,115:22:773:115:4034:-322.004,0,-28.6004	0/0:51:50,1:50:1780:1:36:0,-11.7543,-155.195	0/1:88:14,73:14:496:73:2568:-204.848,0,-17.809	0/1:36:17,19:17:612:19:676:-50.3309,0,-44.427	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.282	0/1:67:19,48:19:684:48:1687:-131.93,0,-41.3629	0/0:46:46,0:46:1656:0:0:0,-13.8474,-148.875	0/1:70:25,45:25:892:45:1591:-121.901,0,-59.3858	0/1:45:18,27:18:644:27:952:-72.4428,0,-44.6975	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.175	0/0:30:30,0:30:1055:0:0:0,-9.0309,-94.8184	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.965	0/0:31:31,0:31:1112:0:0:0,-9.33193,-99.5817	0/1:137:38,99:38:1360:99:3548:-278.278,0,-81.2903	0/1:93:28,64:28:999:64:2268:-176.304,0,-61.2306	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.5801	0/1:64:18,46:18:644:46:1644:-128.892,0,-38.856	0/0:78:71,7:71:2531:7:252:0,-0.451379,-204.143	0/1:73:13,60:13:468:60:2127:-169.691,0,-20.4242	0/0:148:147,1:147:5245:1:36:0,-40.9552,-468.116	0/0:93:93,0:93:3301:0:0:0,-27.9958,-296.112	0/1:26:6,20:6:216:20:701:-55.5802,0,-11.9357	0/0:78:78,0:78:2754:0:0:0,-23.4803,-247.654	0/0:49:49,0:49:1734:0:0:0,-14.7505,-155.746	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.287	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.68989	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.7437	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.91644	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5105	0/1:19:7,11:7:229:11:384:-29.109,0,-15.1131	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.293	0/0:106:106,0:106:3770:0:0:0,-31.9092,-338.475	0/1:67:30,37:30:1076:37:1294:-96.5758,0,-76.7462	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.08802	0/1:89:25,64:25:873:64:2265:-177.032,0,-51.8435	0/0:29:29,0:29:1032:0:0:0,-8.72987,-92.6614	0/1:105:26,79:26:932:79:2801:-220.712,0,-52.4736	0/1:57:17,40:17:608:40:1423:-111.203,0,-37.8525	0/1:55:13,42:13:468:42:1483:-117.206,0,-25.8724	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.735	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.302	0/1:158:45,113:45:1599:113:3979:-310.714,0,-95.6141	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.098	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.645	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.55	0/1:10:4,6:4:144:6:208:-16.0488,0,-10.2937	0/0:76:76,0:76:2693:0:0:0,-22.8783,-241.587	0/1:37:13,24:13:464:24:845:-65.2251,0,-30.8911	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.7595	0/1:72:25,47:25:900:47:1665:-128.456,0,-59.2772	0/1:64:28,36:28:1004:36:1275:-95.7807,0,-71.1347	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3979	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.815	0/0:103:103,0:103:3660:0:0:0,-31.0061,-329.153	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99362	0/0:51:51,0:51:1824:0:0:0,-15.3525,-163.824	0/0:84:84,0:84:3004:0:0:0,-25.2865,-269.516	0/1:63:16,47:16:572:47:1680:-132.377,0,-32.6491	0/0:21:20,1:20:712:1:36:0,-2.72335,-60.6566	0/0:82:81,1:81:2887:1:36:0,-21.0862,-256.129	0/1:55:21,34:21:748:34:1208:-92.4601,0,-50.9995	0/1:33:9,24:9:324:24:860:-67.7786,0,-19.53	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.102	0/1:75:32,42:32:1152:42:1487:-111.487,0,-81.1304	0/1:40:11,29:11:392:29:1016:-79.4776,0,-23.5497	0/0:54:54,0:54:1901:0:0:0,-16.2556,-170.499	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.4264	0/1:158:48,109:48:1724:109:3812:-295.413,0,-107.126	0/1:72:20,52:20:716:52:1838:-143.844,0,-43.0082	0/1:61:23,38:23:824:38:1328:-101.43,0,-55.5558	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.1287	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7408	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.2497	0/0:35:35,0:35:1243:0:0:0,-10.536,-111.329	0/0:68:68,0:68:2432:0:0:0,-20.47,-218.81	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.738	0/1:41:17,24:17:612:24:841:-63.6618,0,-43.0312	0/1:63:14,49:14:504:49:1731:-137.078,0,-26.698	0/1:120:43,77:43:1531:77:2689:-206.119,0,-101.455	0/1:27:14,13:14:500:13:464:-33.9615,0,-36.8256	0/0:37:37,0:37:1324:0:0:0,-11.1381,-118.607	0/0:34:34,0:34:1212:0:0:0,-10.235,-108.914	0/1:50:15,35:15:540:35:1239:-96.755,0,-33.8156	0/1:147:48,99:48:1708:99:3486:-269.674,0,-109.484	0/1:62:11,51:11:387:51:1784:-142.166,0,-16.0488	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.0276	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.44
chr07	26322120	.	GACGA	CACGG,CACGA	185946	PASS	AB=0.222386,0.772122;ABP=3172.69,3048.54;AC=139,48;AF=0.739362,0.255319;AN=188;AO=4407,3796;CIGAR=1X3M1X,1X4M;DP=8259;DPB=8262;DPRA=9.85663,1.56877;EPP=9572.69,8245.92;EPPR=5.18177;GTI=10;LEN=5,1;MEANALT=2.11828,2.59615;MQM=44.3828,59.9181;MQMR=60;NS=94;NUMALT=2;ODDS=17679.6;PAIRED=0,0;PAIREDR=0;PAO=7.33333,0.333333;PQA=182,12;PQR=0;PRO=0;QA=150333,134247;QR=36;RO=1;RPL=0,2054;RPP=9572.69,58.6952;RPPR=5.18177;RPR=4407,1742;RUN=1,1;SAF=0,2054;SAP=9572.69,58.6952;SAR=4407,1742;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:48:0,8,40:0:0:8,40:269,1395:-135.276,-113.804,-111.395,-21.8065,0,-9.76535	1/2:140:0,34,105:0:0:34,105:1181,3701:-395.779,-301.435,-291.2,-94.4352,0,-62.827	1/2:201:0,64,137:0:0:64,137:2204,4871:-573.602,-397.031,-377.765,-176.916,0,-135.675	1/1:123:0,123,0:0:0:123,0:4207,0:-372.505,-37.0267,0,-372.505,-37.0267,-372.505	1/1:64:0,64,0:0:0:64,0:2193,0:-194.725,-19.2659,0,-194.725,-19.2659,-194.725	1/1:16:0,15,1:0:0:15,1:511,32:-45.523,-4.51545,0,-42.9458,-1.61717,-42.6447	1/2:200:0,78,121:0:0:78,121:2652,4241:-556.15,-345.209,-321.728,-211.048,0,-174.623	1/1:80:0,79,0:0:0:79,0:2674,0:-237.702,-23.7814,0,-237.702,-23.7814,-237.702	1/2:134:0,19,113:0:0:19,113:620,3998:-374.367,-325.718,-319.998,-48.6932,0,-14.6768	1/2:134:0,30,104:0:0:30,104:1019,3675:-380.678,-299.647,-290.616,-81.3694,0,-50.0622	1/1:14:0,14,0:0:0:14,0:464,0:-41.6767,-4.21442,0,-41.6767,-4.21442,-41.6767	1/2:115:0,24,90:0:0:24,90:780,3191:-322.255,-259.927,-252.702,-62.2988,0,-35.2061	1/1:36:0,36,0:0:0:36,0:1211,0:-108.194,-10.8371,0,-108.194,-10.8371,-108.194	1/2:107:0,12,95:0:0:12,95:405,3353:-305.739,-273.26,-269.647,-32.8153,0,-4.2174	1/2:88:0,12,75:0:0:12,75:392,2647:-246.88,-215.619,-212.007,-31.3064,0,-8.72915	1/1:20:0,19,0:0:0:19,0:644,0:-56.5572,-5.71957,0,-56.5572,-5.71957,-56.5572	1/1:17:0,17,0:0:0:17,0:557,0:-48.9882,-5.11751,0,-48.9882,-5.11751,-48.9882	1/1:16:0,16,0:0:0:16,0:531,0:-47.6411,-4.81648,0,-47.6411,-4.81648,-47.6411	1/1:16:0,16,0:0:0:16,0:548,0:-49.1911,-4.81648,0,-49.1911,-4.81648,-49.1911	1/2:169:0,55,113:0:0:55,113:1874,4012:-475.356,-326.62,-310.064,-148.717,0,-114.701	1/2:167:0,30,136:0:0:30,136:1019,4837:-475.058,-394.342,-385.312,-80.8475,0,-39.9074	1/1:104:0,101,1:0:0:101,1:3452,36:-304.273,-30.404,0,-301.336,-27.4428,-301.035	1/2:101:0,24,76:0:0:24,76:808,2708:-284.853,-220.815,-213.59,-64.1012,0,-41.223	1/1:77:0,70,5:0:0:70,5:2427,180:-215.114,-21.0721,0,-200.426,-6.33808,-198.921	1/2:81:0,26,52:0:0:26,52:914,1852:-224.47,-151.027,-143.2,-73.5091,0,-57.8555	1/1:186:0,185,0:0:0:185,0:6316,0:-556.901,-55.6906,0,-556.901,-55.6906,-556.901	1/1:120:0,119,1:0:0:119,1:4057,36:-357.185,-35.8226,0,-354.247,-32.5253,-353.946	1/2:55:0,7,48:0:0:7,48:239,1703:-158.074,-139.106,-136.999,-19.3058,0,-4.8564	1/1:279:0,278,0:0:0:278,0:9567,0:-844.576,-83.6863,0,-844.576,-83.6863,-844.576	1/1:62:0,61,1:0:0:61,1:2066,36:-182.767,-18.3628,0,-179.829,-15.0656,-179.528	1/1:37:0,34,0:0:0:34,0:1175,0:-103.635,-10.235,0,-103.635,-10.235,-103.635	0/2:3:1,1,1:1:36:1,1:35,36:-2.64337,-0.139655,-2.77604,0,-0.139655,-2.64337	1/1:6:0,6,0:0:0:6,0:209,0:-18.9333,-1.80618,0,-18.9333,-1.80618,-18.9333	1/2:9:0,4,5:0:0:4,5:129,180:-25.0604,-15.0469,-13.8428,-10.3469,0,-8.84171	1/1:1:0,1,0:0:0:1,0:36,0:-3.55862,-0.30103,0,-3.55862,-0.30103,-3.55862	1/2:24:0,4,20:0:0:4,20:138,695:-67.9557,-56.8508,-55.6467,-11.4477,0,-5.4271	1/1:87:0,86,0:0:0:86,0:2883,0:-254.995,-25.8886,0,-254.995,-25.8886,-254.995	1/1:124:0,124,0:0:0:124,0:4235,0:-373.14,-37.3277,0,-373.14,-37.3277,-373.14	1/2:89:0,17,72:0:0:17,72:570,2528:-251.53,-206.097,-200.98,-45.7675,0,-24.0933	2/2:9:0,0,9:0:0:0,9:0,315:-28.6872,-28.6872,-28.6872,-2.70927,-2.70927,0	1/2:162:0,39,123:0:0:39,123:1338,4395:-465.856,-358.696,-346.956,-107.504,0,-70.4771	1/1:11:0,11,0:0:0:11,0:364,0:-32.4692,-3.31133,0,-32.4692,-3.31133,-32.4692	1/2:235:0,73,162:0:0:73,162:2504,5760:-669.356,-469.751,-447.776,-199.949,0,-151.182	1/2:111:0,16,93:0:0:16,93:555,3307:-314.032,-269.537,-264.72,-44.5201,0,-16.5243	1/2:81:0,10,70:0:0:10,70:310,2453:-224.298,-199.721,-196.711,-24.6513,0,-3.57916	1/1:41:0,41,0:0:0:41,0:1402,0:-124.344,-12.3422,0,-124.344,-12.3422,-124.344	1/1:115:0,114,0:0:0:114,0:3904,0:-347.447,-34.3174,0,-347.447,-34.3174,-347.447	1/2:230:0,80,150:0:0:80,150:2778,5295:-653.194,-431.53,-407.448,-222.009,0,-176.855	1/1:71:0,70,0:0:0:70,0:2381,0:-211.61,-21.0721,0,-211.61,-21.0721,-211.61	1/1:85:0,85,0:0:0:85,0:2984,0:-265.41,-25.5876,0,-265.41,-25.5876,-265.41	1/1:130:0,128,0:0:0:128,0:4307,0:-380.816,-38.5318,0,-380.816,-38.5318,-380.816	1/2:16:0,2,14:0:0:2,14:66,492:-45.6804,-40.3979,-39.7959,-5.61253,0,-1.39811	1/1:124:0,124,0:0:0:124,0:4261,0:-377.155,-37.3277,0,-377.155,-37.3277,-377.155	1/2:52:0,7,44:0:0:7,44:230,1539:-143.626,-125.266,-123.159,-18.3977,0,-5.15236	1/1:3:0,3,0:0:0:3,0:98,0:-9.07819,-0.90309,0,-9.07819,-0.90309,-9.07819	1/2:211:0,52,159:0:0:52,159:1784,5651:-602.635,-460.848,-445.195,-142.127,0,-94.2636	1/2:70:0,1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chr07	26325743	.	GCCC	ACCC,ACCT	308787	PASS	AB=0.484642,0.509104;ABP=14.1488,6.9247;AC=144,44;AF=0.765957,0.234043;AN=188;AO=11444,2782;CIGAR=1X3M,1X2M1X;DP=14312;DPB=14312;DPRA=0,0.800843;EPP=24836,6044.05;EPPR=35.5824;GTI=3;LEN=1,4;MEANALT=2.19149,2.7;MQM=59.9907,59.4313;MQMR=60;NS=94;NUMALT=2;ODDS=6.25768;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=408358,96996;QR=525;RO=15;RPL=2,0;RPP=24836,6044.05;RPPR=35.5824;RPR=11442,2782;RUN=1,1;SAF=0,0;SAP=24853.3,6044.05;SAR=11444,2782;SRF=0;SRP=35.5824;SRR=15;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,14,18:0:0:14,18:496,646:-93.4461,-53.0423,-48.8279,-40.7598,0,-35.3413	1/2:199:0,96,102:0:0:96,102:3411,3595:-570.69,-292.739,-263.84,-278.033,0,-247.328	1/2:248:0,108,138:0:0:108,138:3846,4864:-709.495,-396.024,-363.512,-313.524,0,-271.982	1/1:446:0,444,0:0:0:444,0:15811,0:-1422.35,-133.657,0,-1422.35,-133.657,-1422.35	1/1:152:2,150,0:2:72:150,0:5396,0:-478.931,-38.9198,0,-479.533,-45.1545,-485.408	1/1:75:0,75,0:0:0:75,0:2662,0:-239.826,-22.5773,0,-239.826,-22.5773,-239.826	1/2:154:0,72,80:0:0:72,80:2562,2799:-436.53,-227.727,-206.053,-208.825,0,-184.742	1/1:263:0,263,0:0:0:263,0:9357,0:-842.098,-79.1709,0,-842.098,-79.1709,-842.098	1/2:105:0,52,53:0:0:52,53:1868,1836:-301.954,-149.561,-133.908,-152.746,0,-136.791	1/2:117:0,52,65:0:0:52,65:1859,2225:-332.513,-180.928,-165.275,-151.935,0,-132.368	1/1:59:0,58,0:0:0:58,0:2072,0:-186.498,-17.4597,0,-186.498,-17.4597,-186.498	1/2:88:0,45,43:0:0:45,43:1603,1456:-249.032,-118.366,-104.82,-131.013,0,-118.069	1/1:85:2,83,0:2:72:83,0:2966,0:-260.335,-18.7508,0,-260.937,-24.9855,-266.812	1/2:88:0,52,34:0:0:52,34:1855,1186:-247.768,-96.5417,-80.8881,-151.312,0,-141.077	1/2:84:0,46,38:0:0:46,38:1628,1343:-242.333,-109.728,-95.8805,-132.959,0,-121.52	1/1:67:0,65,0:0:0:65,0:2312,0:-207.98,-19.567,0,-207.98,-19.567,-207.98	1/1:119:0,119,0:0:0:119,0:4237,0:-381.51,-35.8226,0,-381.51,-35.8226,-381.51	1/1:73:0,72,0:0:0:72,0:2556,0:-230.04,-21.6742,0,-230.04,-21.6742,-230.04	1/1:40:0,40,0:0:0:40,0:1425,0:-128.547,-12.0412,0,-128.547,-12.0412,-128.547	1/2:208:0,108,98:0:0:108,98:3880,3413:-594.048,-277.519,-245.007,-316.573,0,-287.072	1/2:199:0,92,107:0:0:92,107:3282,3735:-571.691,-304.14,-276.445,-267.904,0,-235.694	1/1:235:0,232,0:0:0:232,0:8317,0:-748.261,-69.839,0,-748.261,-69.839,-748.261	1/2:117:0,53,64:0:0:53,64:1872,2230:-333.699,-181.519,-165.564,-152.531,0,-133.265	1/2:109:0,97,12:0:0:97,12:3488,417:-318.83,-34.2491,-5.04924,-284.93,0,-281.317	1/2:118:0,52,66:0:0:52,66:1864,2324:-341.559,-189.528,-173.875,-152.386,0,-132.518	1/1:683:0,681,0:0:0:681,0:24232,0:-2179.87,-205.001,0,-2179.87,-205.001,-2179.87	1/1:351:0,351,0:0:0:351,0:12502,0:-1125.01,-105.662,0,-1125.01,-105.662,-1125.01	1/2:39:0,19,20:0:0:19,20:680,706:-113.294,-57.8402,-52.1206,-55.8096,0,-49.789	1/1:329:0,329,0:0:0:329,0:11799,0:-1061.77,-99.0389,0,-1061.77,-99.0389,-1061.77	1/1:241:3,236,0:3:102:236,0:8425,0:-748.746,-62.7575,0,-749.649,-71.0431,-757.922	1/1:181:0,181,0:0:0:181,0:6431,0:-578.878,-54.4864,0,-578.878,-54.4864,-578.878	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/2:13:0,10,3:0:0:10,3:345,107:-37.0958,-9.07908,-6.06878,-28.3705,0,-27.4674	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:20:0,10,10:0:0:10,10:360,330:-56.352,-26.9626,-23.9523,-29.734,0,-26.7237	1/1:267:0,265,0:0:0:265,0:9482,0:-853.108,-79.773,0,-853.108,-79.773,-853.108	1/1:473:0,472,0:0:0:472,0:16841,0:-1515.11,-142.086,0,-1515.11,-142.086,-1515.11	1/2:93:0,44,47:0:0:44,47:1549,1577:-253.8,-127.688,-114.443,-126.125,0,-111.977	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/2:249:0,139,109:0:0:139,109:4977,3798:-714.218,-308.336,-266.493,-406.002,0,-373.19	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/2:226:0,106,119:0:0:106,119:3799,4157:-647.1,-337.255,-305.346,-309.917,0,-274.094	1/2:134:0,63,69:0:0:63,69:2256,2387:-378.047,-194.06,-175.095,-184.085,0,-163.314	1/2:77:0,34,41:0:0:34,41:1192,1392:-209.926,-112.923,-102.688,-97.0422,0,-84.7	1/1:119:0,119,0:0:0:119,0:4259,0:-383.488,-35.8226,0,-383.488,-35.8226,-383.488	1/1:156:0,156,0:0:0:156,0:5561,0:-500.615,-46.9607,0,-500.615,-46.9607,-500.615	1/2:298:0,156,141:0:0:156,141:5581,4961:-859.013,-403.918,-356.957,-455.198,0,-412.753	1/1:166:0,164,0:0:0:164,0:5892,0:-530.027,-49.3689,0,-530.027,-49.3689,-530.027	1/1:406:0,404,0:0:0:404,0:14448,0:-1299.78,-121.616,0,-1299.78,-121.616,-1299.78	1/1:172:1,170,0:1:36:170,0:6077,0:-543.433,-48.2377,0,-543.734,-51.1751,-546.671	1/2:15:0,4,11:0:0:4,11:144,382:-43.1542,-31.4012,-30.1971,-12.1095,0,-8.79817	1/1:184:0,182,0:0:0:182,0:6498,0:-584.553,-54.7875,0,-584.553,-54.7875,-584.553	1/2:68:0,40,28:0:0:40,28:1436,991:-198.213,-81.0724,-69.0312,-117.496,0,-109.068	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/2:240:0,120,119:0:0:120,119:4281,4129:-683.965,-334.972,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chr07	26325776	.	A	G	46419.1	PASS	AB=0.50274;ABP=3.36732;AC=44;AF=0.234043;AN=188;AO=2768;CIGAR=1X;DP=14505;DPB=14505;DPRA=0.788143;EPP=6013.65;EPPR=25472.2;GTI=3;LEN=1;MEANALT=1.03922;MQM=59.3902;MQMR=59.9744;NS=94;NUMALT=1;ODDS=7.65724;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98927;QR=419696;RO=11733;RPL=2768;RPP=6013.65;RPPR=25472.2;RPR=0;RUN=1;SAF=0;SAP=6013.65;SAR=2768;SRF=0;SRP=25480.9;SRR=11733;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:14,18:14:500:18:644:-48.6425,0,-35.7032	0/1:201:101,100:101:3632:100:3577:-261.599,0,-266.577	0/1:249:114,135:114:4080:135:4837:-360.446,0,-292.422	0/0:445:445,0:445:15888:0:0:0,-133.958,-1429.61	0/0:155:155,0:155:5551:0:0:0,-46.6596,-499.713	0/0:76:76,0:76:2710:0:0:0,-22.8783,-244.143	0/1:157:76,80:76:2712:80:2872:-211.508,0,-197.132	0/0:265:265,0:265:9479:0:0:0,-79.7729,-853.07	0/1:108:56,52:56:1995:52:1848:-134.083,0,-147.312	0/1:116:53,63:53:1900:63:2249:-167.692,0,-136.358	0/0:60:60,0:60:2124:0:0:0,-18.0618,-191.356	0/1:89:46,43:46:1643:43:1540:-112.052,0,-121.366	0/0:88:88,0:88:3131:0:0:0,-26.4906,-282.017	0/1:90:53,37:53:1904:37:1316:-91.6394,0,-144.545	0/1:86:48,38:48:1710:38:1353:-96.1775,0,-128.293	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:124:123,1:123:4420:1:36:0,-33.7294,-394.372	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:203:110,93:110:3918:93:3344:-239.775,0,-291.704	0/1:203:97,106:97:3484:106:3808:-281.803,0,-252.661	0/0:243:243,0:243:8708:0:0:0,-73.1503,-783.71	0/1:116:54,62:54:1944:62:2224:-165.388,0,-140.317	0/1:115:102,13:102:3664:13:468:-7.8412,0,-295.344	0/1:119:53,66:53:1888:66:2372:-177.888,0,-134.374	0/0:689:689,0:689:24669:0:0:0,-207.41,-2219.44	0/0:359:359,0:359:12851:0:0:0,-108.07,-1156.41	0/1:39:19,20:19:684:20:716:-53.0229,0,-50.1502	0/0:340:339,0:339:12143:0:0:0,-102.049,-1092.5	0/0:241:241,0:241:8635:0:0:0,-72.5482,-777.143	0/0:180:180,0:180:6448:0:0:0,-54.1854,-580.401	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:12:9,3:9:315:3:108:-6.46281,0,-25.0749	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:20:10,10:10:352:10:360:-26.532,0,-25.9976	0/0:269:269,0:269:9643:0:0:0,-80.9771,-867.819	0/0:482:482,0:482:17238:0:0:0,-145.096,-1551.05	0/1:92:45,47:45:1616:47:1659:-121.864,0,-118.035	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:248:142,106:142:5072:106:3779:-264.91,0,-381.948	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:235:115,120:115:4127:120:4300:-314.624,0,-300.87	0/1:135:67,68:67:2400:68:2435:-178.759,0,-175.618	0/1:77:35,42:35:1236:42:1504:-111.847,0,-88.3594	0/0:125:125,0:125:4452:0:0:0,-37.6287,-400.853	0/0:162:162,0:162:5800:0:0:0,-48.7669,-522.114	0/1:298:156,142:156:5572:142:5053:-365.154,0,-411.896	0/0:169:169,0:169:6057:0:0:0,-50.8741,-545.23	0/0:417:417,0:417:14887:0:0:0,-125.53,-1339.07	0/0:171:171,0:171:6089:0:0:0,-51.4761,-548.111	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	0/0:194:194,0:194:6964:0:0:0,-58.3998,-626.822	0/1:68:40,28:40:1436:28:1008:-70.5636,0,-109.068	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:241:125,116:125:4459:116:4101:-296.489,0,-328.933	0/1:89:33,56:33:1188:56:2004:-153.235,0,-80.4369	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:128:128,0:128:4569:0:0:0,-38.5318,-411.375	0/0:177:174,3:174:6204:3:108:0,-43.2071,-548.382	0/1:24:9,15:9:320:15:525:-40.3533,0,-21.9176	0/0:464:464,0:464:16579:0:0:0,-139.678,-1491.78	0/0:360:354,6:354:12688:6:216:0,-88.5803,-1121.82	0/1:147:71,76:71:2531:76:2720:-200.468,0,-183.79	0/0:145:145,0:145:5175:0:0:0,-43.6493,-465.889	0/0:257:255,2:255:9123:2:72:0,-70.528,-813.838	0/1:138:38,100:38:1364:100:3566:-279.502,0,-81.5186	0/1:24:16,8:16:563:8:287:-18.9481,0,-43.7744	0/0:95:95,0:95:3367:0:0:0,-28.5978,-303.246	0/1:123:54,69:54:1935:69:2445:-183.081,0,-137.398	0/1:31:15,16:15:532:16:572:-42.4791,0,-38.8812	0/0:115:115,0:115:4108:0:0:0,-34.6184,-369.906	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/1:213:103,110:103:3688:110:3927:-289.467,0,-267.067	0/1:307:144,163:144:5154:163:5833:-432.608,0,-371.583	0/1:354:180,173:180:6434:173:6189:-450.213,0,-472.668	0/0:229:227,2:227:8121:2:72:0,-62.0991,-723.799	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:153:153,0:153:5469:0:0:0,-46.0576,-492.337	0/0:254:253,1:253:9080:1:36:0,-72.8633,-813.574	0/0:290:290,0:290:10363:0:0:0,-87.2987,-932.594	0/0:140:140,0:140:5011:0:0:0,-42.1442,-451.134	0/1:56:27,29:27:954:29:1036:-76.6939,0,-69.3163	0/1:123:56,67:56:2008:67:2408:-179.772,0,-143.967	0/1:184:94,90:94:3372:90:3218:-234.422,0,-248.306	0/1:61:33,28:33:1188:28:1008:-72.6396,0,-88.8658	0/0:92:91,0:91:3255:0:0:0,-27.3937,-292.957	0/0:86:86,0:86:3066:0:0:0,-25.8886,-276.168	0/1:37:19,18:19:684:18:640:-46.7275,0,-50.7522	0/1:103:47,56:47:1684:56:2007:-149.738,0,-120.841	0/1:93:35,58:35:1239:58:2063:-157.907,0,-83.8179	0/0:193:193,0:193:6904:0:0:0,-58.0988,-621.425	0/0:133:132,1:132:4718:1:36:0,-36.4387,-421.18
chr07	26418755	.	A	G	254705	PASS	AB=0.485913;ABP=13.4106;AC=146;AF=0.776596;AN=188;AO=11905;CIGAR=1X;DP=15032;DPB=15032;DPRA=0;EPP=25681;EPPR=6691.28;GTI=0;LEN=1;MEANALT=1.18085;MQM=59.9955;MQMR=60;NS=94;NUMALT=1;ODDS=0.171522;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=422308;QR=111409;RO=3108;RPL=11885;RPP=25681;RPPR=6691.28;RPR=20;RUN=1;SAF=0;SAP=25854.4;SAR=11905;SRF=0;SRP=6751.95;SRR=3108;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:99:59,40:59:2120:40:1411:-97.4844,0,-161.267	0/1:263:136,127:136:4883:127:4496:-325.641,0,-360.449	0/1:237:121,116:121:4348:116:4128:-300.361,0,-320.149	1/1:340:1,339:1:36:339:12040:-1079.86,-98.7519,0	1/1:111:0,111:0:0:111:3933:-354.164,-33.4143,0	1/1:97:0,97:0:0:97:3459:-311.523,-29.1999,0	0/1:253:107,146:107:3840:146:5149:-387.395,0,-269.635	1/1:269:0,268:0:0:268:9510:-855.506,-80.676,0	0/1:204:114,90:114:4063:90:3191:-226.005,0,-304.448	0/1:181:84,97:84:3011:97:3450:-256.228,0,-216.734	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	0/1:97:46,51:46:1652:51:1823:-135.15,0,-119.769	1/1:83:0,83:0:0:83:2943:-265.103,-24.9855,0	0/1:69:37,32:37:1315:32:1135:-81.687,0,-97.88	0/1:88:46,42:46:1656:42:1495:-108.353,0,-122.838	1/1:60:0,60:0:0:60:2109:-190.078,-18.0618,0	1/1:59:0,59:0:0:59:2073:-186.839,-17.7608,0	1/1:71:0,71:0:0:71:2532:-228.132,-21.3731,0	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	0/1:397:196,201:196:7040:201:7086:-518.302,0,-514.15	0/1:309:178,131:178:6382:131:4630:-323.849,0,-481.448	1/1:158:0,158:0:0:158:5607:-504.754,-47.5627,0	0/1:173:75,97:75:2684:97:3442:-257.857,0,-189.668	1/1:223:7,216:7:252:216:7664:-666.771,-44.1007,0	0/1:167:88,78:88:3156:78:2761:-198.401,0,-233.934	1/1:601:1,600:1:36:600:21336:-1916.12,-177.321,0	1/1:304:0,301:0:0:301:10702:-962.734,-90.61,0	0/1:39:20,19:20:703:19:684:-50.1502,0,-51.8533	1/1:488:0,488:0:0:488:17335:-1559.72,-146.903,0	1/1:270:1,269:1:36:269:9588:-859.28,-77.6798,0	1/1:202:0,201:0:0:201:7124:-640.865,-60.507,0	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:17:4,13:4:144:13:464:-36.98,0,-8.19611	1/1:239:0,239:0:0:239:8440:-759.614,-71.9462,0	1/1:349:0,349:0:0:349:12387:-1114.68,-105.059,0	0/1:81:47,34:47:1679:34:1224:-86.0836,0,-127.013	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:277:121,155:121:4344:155:5497:-411.567,0,-307.838	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	0/1:269:143,126:143:5131:126:4449:-319.608,0,-380.953	0/1:96:43,53:43:1544:53:1892:-141.659,0,-110.354	0/1:79:38,41:38:1355:41:1431:-105.302,0,-98.4683	1/1:271:0,271:0:0:271:9632:-866.837,-81.5791,0	1/1:207:1,205:1:36:205:7298:-653.276,-58.7737,0	0/1:334:182,151:182:6520:151:5350:-381.034,0,-486.28	1/1:237:0,237:0:0:237:8403:-756.28,-71.3441,0	1/1:243:0,243:0:0:243:8650:-778.499,-73.1503,0	1/1:288:0,287:0:0:287:10177:-915.51,-86.3956,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:239:0,239:0:0:239:8506:-765.544,-71.9462,0	0/1:90:45,45:45:1612:45:1598:-117.016,0,-118.277	1/1:23:0,23:0:0:23:819:-74.0316,-6.92369,0	0/1:233:123,109:123:4411:109:3880:-279.235,0,-327.002	0/1:110:60,50:60:2148:50:1753:-124.938,0,-160.474	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:138:0,138:0:0:138:4878:-439.176,-41.5421,0	1/1:105:0,105:0:0:105:3713:-334.374,-31.6082,0	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	1/1:326:1,325:1:36:325:11523:-1033.36,-94.5375,0	1/1:306:1,305:1:36:305:10843:-972.18,-88.5169,0	0/1:97:50,47:50:1800:47:1649:-119.496,0,-133.082	1/1:135:0,135:0:0:135:4785:-430.808,-40.6391,0	1/1:258:0,258:0:0:258:9148:-823.301,-77.6657,0	0/1:227:135,92:135:4829:92:3282:-227.265,0,-366.429	0/1:34:15,19:15:540:19:668:-50.2106,0,-38.7015	1/1:101:0,101:0:0:101:3547:-319.439,-30.404,0	0/1:84:42,42:42:1503:42:1486:-108.747,0,-110.277	0/1:35:14,21:14:500:21:744:-56.7483,0,-34.8001	1/1:228:0,227:0:0:227:8053:-724.549,-68.3338,0	1/1:93:0,93:0:0:93:3311:-298.209,-27.9958,0	0/1:224:114,109:114:4080:109:3860:-280.105,0,-299.897	0/1:288:139,148:139:4988:148:5274:-388.042,0,-362.311	0/1:213:116,97:116:4150:97:3414:-243.357,0,-309.563	1/1:173:0,172:0:0:172:6079:-546.858,-51.7772,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:161:0,161:0:0:161:5730:-515.82,-48.4658,0	1/1:180:0,179:0:0:179:6340:-570.375,-53.8844,0	1/1:450:1,449:1:36:449:15935:-1430.26,-131.865,0	1/1:128:0,128:0:0:128:4550:-409.669,-38.5318,0	0/1:80:40,40:40:1440:40:1419:-103.924,0,-105.815	0/1:116:62,54:62:2232:54:1923:-138.427,0,-166.224	0/1:202:95,107:95:3404:107:3765:-278.243,0,-245.766	0/1:54:32,21:32:1135:21:736:-50.2484,0,-86.1438	1/1:81:0,81:0:0:81:2849:-256.649,-24.3834,0	1/1:76:0,76:0:0:76:2685:-241.894,-22.8783,0	0/1:31:15,16:15:540:16:567:-42.0288,0,-39.6046	0/1:83:51,32:51:1836:32:1139:-77.8329,0,-140.535	0/1:81:49,31:49:1755:31:1048:-70.1797,0,-133.791	1/1:266:0,266:0:0:266:9425:-848.221,-80.074,0	1/1:132:1,131:1:36:131:4653:-415.336,-36.1377,0
chr07	26451783	.	ATCT	GTCT,GTTT	169625	PASS	AB=0.473172,0.522121;ABP=22.9337,16.5563;AC=141,45;AF=0.758065,0.241935;AN=186;AO=6103,1678;CIGAR=1X3M,1X1M1X1M;DP=7813;DPB=7813.5;DPRA=32.5208,0.866352;EPP=13255.5,3646.74;EPPR=7.35324;GTI=2;LEN=1,4;MEANALT=1.72222,2.19565;MQM=59.9387,59.7098;MQMR=60;NS=93;NUMALT=2;ODDS=0.755358;PAIRED=0,0;PAIREDR=0;PAO=0.666667,0.666667;PQA=24,24;PQR=0;PRO=0;QA=218663,59462;QR=71;RO=2;RPL=6103,1678;RPP=13255.5,3646.74;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13255.5,3646.74;SAR=6103,1678;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:20:0,10,10:0:0:10,10:360,347:-57.9341,-28.5534,-25.5431,-29.734,0,-26.7237	1/2:111:0,49,62:0:0:49,62:1749,2177:-319.929,-177.342,-162.592,-142.941,0,-124.277	1/2:87:0,37,50:0:0:37,50:1328,1781:-253.847,-145.521,-134.383,-108.684,0,-93.6326	1/1:130:0,130,0:0:0:130,0:4664,0:-419.592,-39.1339,0,-419.592,-39.1339,-419.592	1/1:62:0,61,1:0:0:61,1:2192,36:-197.186,-18.3628,0,-194.248,-15.0656,-193.947	1/1:55:0,55,0:0:0:55,0:1976,0:-178.115,-16.5567,0,-178.115,-16.5567,-178.115	1/2:101:0,48,53:0:0:48,53:1719,1891:-294.652,-154.483,-140.033,-140.526,0,-124.572	1/1:108:0,108,0:0:0:108,0:3876,0:-349.034,-32.5112,0,-349.034,-32.5112,-349.034	1/2:49:0,21,28:0:0:21,28:752,986:-141.953,-80.6241,-74.3025,-61.6846,0,-53.2558	1/2:88:0,29,58:0:0:29,58:1044,2062:-253.013,-167.826,-159.096,-85.2623,0,-67.8026	1/1:88:0,88,0:0:0:88,0:3150,0:-283.454,-26.4906,0,-283.454,-26.4906,-283.454	1/2:92:0,38,53:0:0:38,53:1368,1878:-264.625,-153,-141.561,-111.641,0,-95.6867	1/1:110:0,110,0:0:0:110,0:3944,0:-355.151,-33.1133,0,-355.151,-33.1133,-355.151	1/2:120:0,55,63:0:0:55,63:1980,2242:-344.278,-182.719,-166.162,-161.558,0,-142.593	1/2:91:0,44,47:0:0:44,47:1584,1656:-264.429,-135.179,-121.934,-129.606,0,-115.458	1/1:64:0,64,0:0:0:64,0:2290,0:-206.361,-19.2659,0,-206.361,-19.2659,-206.361	1/1:92:0,92,0:0:0:92,0:3304,0:-297.578,-27.6948,0,-297.578,-27.6948,-297.578	1/1:68:0,68,0:0:0:68,0:2448,0:-220.573,-20.47,0,-220.573,-20.47,-220.573	1/1:51:0,50,0:0:0:50,0:1787,0:-160.752,-15.0515,0,-160.752,-15.0515,-160.752	1/2:107:0,48,59:0:0:48,59:1716,2098:-311.247,-171.327,-156.877,-140.276,0,-122.515	1/2:97:0,45,52:0:0:45,52:1616,1845:-282.301,-150.474,-136.928,-132.184,0,-116.53	1/1:70:0,70,0:0:0:70,0:2500,0:-225.253,-21.0721,0,-225.253,-21.0721,-225.253	1/2:56:0,20,36:0:0:20,36:708,1253:-159.906,-102.232,-96.2118,-58.025,0,-47.1879	1/1:82:0,79,3:0:0:79,3:2828,106:-254.406,-23.7814,0,-245.773,-14.7954,-244.87	1/2:78:0,52,26:0:0:52,26:1849,916:-225.606,-74.9251,-59.2715,-151.034,0,-143.208	1/1:226:0,225,0:0:0:225,0:8053,0:-724.416,-67.7318,0,-724.416,-67.7318,-724.416	1/1:160:0,159,0:0:0:159,0:5681,0:-511.048,-47.8638,0,-511.048,-47.8638,-511.048	1/2:57:0,22,34:0:0:22,34:792,1219:-164.154,-99.5288,-92.9062,-64.7282,0,-54.4932	1/1:207:0,204,0:0:0:204,0:7304,0:-656.992,-61.4101,0,-656.992,-61.4101,-656.992	1/1:113:1,112,0:1:35:112,0:3988,0:-355.34,-30.5178,0,-355.641,-33.7154,-358.489	1/1:95:0,95,0:0:0:95,0:3402,0:-306.387,-28.5979,0,-306.387,-28.5979,-306.387	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	.:.:.:.:.:.:.:.	1/1:316:0,315,0:0:0:315,0:11295,0:-1015.98,-94.8245,0,-1015.98,-94.8245,-1015.98	1/1:126:0,125,0:0:0:125,0:4472,0:-402.398,-37.6288,0,-402.398,-37.6288,-402.398	1/2:94:0,44,50:0:0:44,50:1567,1781:-273.226,-145.506,-132.261,-128.076,0,-113.024	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:86:0,49,36:0:0:49,36:1760,1281:-247.935,-104.358,-89.608,-143.574,0,-132.737	1/1:38:0,38,0:0:0:38,0:1368,0:-123.351,-11.4391,0,-123.351,-11.4391,-123.351	1/2:82:0,41,41:0:0:41,41:1468,1462:-239.25,-119.534,-107.191,-120.074,0,-107.732	1/2:111:0,53,58:0:0:53,58:1899,2079:-324.795,-169.921,-153.966,-155.233,0,-137.773	1/2:96:0,49,47:0:0:49,47:1760,1638:-277.132,-133.552,-118.802,-143.933,0,-129.785	1/1:91:0,90,0:0:0:90,0:3224,0:-290.092,-27.0927,0,-290.092,-27.0927,-290.092	1/1:62:0,62,0:0:0:62,0:2216,0:-199.705,-18.6639,0,-199.705,-18.6639,-199.705	1/2:106:0,62,44:0:0:62,44:2212,1543:-306.237,-125.909,-107.245,-180.681,0,-167.436	1/1:98:0,98,0:0:0:98,0:3505,0:-315.659,-29.5009,0,-315.659,-29.5009,-315.659	1/1:118:0,114,0:0:0:114,0:4096,0:-368.464,-34.3174,0,-368.464,-34.3174,-368.464	1/1:109:0,108,0:0:0:108,0:3872,0:-348.315,-32.5112,0,-348.315,-32.5112,-348.315	2/2:4:0,0,4:0:0:0,4:0,142:-13.1292,-13.1292,-13.1292,-1.20412,-1.20412,0	1/1:134:0,133,1:0:0:133,1:4776,36:-429.63,-40.037,0,-426.693,-36.7397,-426.392	1/2:35:0,19,16:0:0:19,16:680,567:-101.999,-46.5451,-40.8255,-55.8096,0,-50.9931	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:47:0,16,28:0:0:16,28:576,974:-126.185,-79.1831,-74.3666,-46.9987,0,-38.5698	1/2:30:0,19,11:0:0:19,11:680,396:-88.122,-32.6714,-26.9518,-55.8096,0,-52.4983	1/2:7:0,6,1:0:0:6,1:212,36:-20.557,-3.29724,-1.49106,-17.6186,0,-17.3176	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:69:0,69,0:0:0:69,0:2484,0:-223.813,-20.7711,0,-223.813,-20.7711,-223.813	1/1:136:0,136,0:0:0:136,0:4896,0:-440.789,-40.9401,0,-440.789,-40.9401,-440.789	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:127:0,127,0:0:0:127,0:4544,0:-409.126,-38.2308,0,-409.126,-38.2308,-409.126	1/1:90:0,90,0:0:0:90,0:3220,0:-290.022,-27.0927,0,-290.022,-27.0927,-290.022	1/2:62:0,38,24:0:0:38,24:1368,853:-181.49,-69.8652,-58.4261,-111.982,0,-104.757	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/1:112:0,110,1:0:0:110,1:3921,28:-352.605,-33.1133,0,-350.387,-30.9345,-350.086	1/2:107:0,28,78:0:0:28,78:996,2756:-305.096,-223.925,-215.496,-81.1664,0,-57.686	1/2:40:0,27,13:0:0:27,13:968,450:-115.875,-36.915,-28.7872,-79.3096,0,-75.3962	1/1:55:0,55,0:0:0:55,0:1972,0:-177.755,-16.5567,0,-177.755,-16.5567,-177.755	1/2:114:0,61,53:0:0:61,53:2184,1876:-330.84,-152.733,-134.37,-178.463,0,-162.509	1/2:10:0,6,4:0:0:6,4:212,144:-29.3709,-12.1095,-10.3033,-17.6186,0,-16.4145	1/1:63:0,63,0:0:0:63,0:2252,0:-202.782,-18.9649,0,-202.782,-18.9649,-202.782	1/1:74:0,74,0:0:0:74,0:2656,0:-239.286,-22.2762,0,-239.286,-22.2762,-239.286	1/2:97:0,46,51:0:0:46,51:1652,1799:-281.59,-146.825,-132.978,-135.121,0,-119.769	1/2:114:0,43,71:0:0:43,71:1548,2525:-332.436,-206.126,-193.181,-126.669,0,-105.296	1/2:38:0,23,15:0:0:23,15:828,527:-110.539,-42.9724,-36.0487,-67.9204,0,-63.405	1/1:84:0,84,0:0:0:84,0:3009,0:-271.039,-25.2865,0,-271.039,-25.2865,-271.039	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:79:0,79,0:0:0:79,0:2832,0:-255.118,-23.7814,0,-255.118,-23.7814,-255.118	1/1:51:0,51,0:0:0:51,0:1828,0:-164.8,-15.3525,0,-164.8,-15.3525,-164.8	1/1:167:0,167,0:0:0:167,0:5974,0:-537.495,-50.272,0,-537.495,-50.272,-537.495	1/1:122:0,122,0:0:0:122,0:4367,0:-393.203,-36.7257,0,-393.203,-36.7257,-393.203	1/2:85:0,54,31:0:0:54,31:1940,1110:-248.871,-90.6082,-74.3526,-158.621,0,-149.289	1/2:128:0,65,62:0:0:65,62:2331,2207:-369.978,-179.871,-160.304,-190.105,0,-171.441	1/2:196:1,87,107:1:36:87,107:3120,3787:-559.676,-305.497,-282.245,-251.539,0,-222.267	1/2:60:0,31,29:0:0:31,29:1103,1015:-172.823,-82.9276,-73.5957,-90.2479,0,-81.518	1/1:114:0,114,0:0:0:114,0:4079,0:-367.296,-34.3174,0,-367.296,-34.3174,-367.296	1/1:113:0,112,0:0:0:112,0:3993,0:-359.309,-33.7154,0,-359.309,-33.7154,-359.309	1/2:56:0,29,26:0:0:29,26:1036,936:-160.838,-76.3729,-67.643,-84.4643,0,-76.6375	1/2:120:0,59,60:0:0:59,60:2124,2131:-347.017,-173.711,-155.951,-173.382,0,-155.32	1/2:112:0,35,77:0:0:35,77:1252,2746:-326.294,-224.202,-213.666,-102.449,0,-79.2697	1/1:62:0,62,0:0:0:62,0:2228,0:-200.692,-18.6639,0,-200.692,-18.6639,-200.692	1/1:159:0,159,0:0:0:159,0:5716,0:-514.502,-47.8638,0,-514.502,-47.8638,-514.502
chr07	26485094	.	T	G	23731.7	PASS	AB=0.544741;ABP=47.3124;AC=44;AF=0.234043;AN=188;AO=1399;CIGAR=1X;DP=6123;DPB=6123;DPRA=0.922449;EPP=3040.9;EPPR=10254.5;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9814;MQMR=59.9837;NS=94;NUMALT=1;ODDS=2.42852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49778;QR=168833;RO=4721;RPL=0;RPP=3040.9;RPPR=10254.5;RPR=1399;RUN=1;SAF=1399;SAP=3040.9;SAR=0;SRF=4721;SRP=10254.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:15,10:15:532:10:360:-25.2186,0,-40.6873	0/1:129:60,68:60:2144:68:2448:-181.683,0,-154.336	0/1:123:51,72:51:1813:72:2580:-195.422,0,-126.423	0/0:120:120,0:120:4270:0:0:0,-36.1236,-384.477	0/0:37:36,0:36:1284:0:0:0,-10.8371,-115.542	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:87:41,46:41:1464:46:1644:-122.059,0,-105.866	0/0:116:115,1:115:4101:1:36:0,-31.3212,-365.676	0/1:50:21,29:21:744:29:1040:-78.8547,0,-52.2328	0/1:79:38,41:38:1345:41:1460:-107.915,0,-97.5668	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:50:25,25:25:896:25:900:-66.2695,0,-65.9089	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:43:19,24:19:680:24:834:-62.4288,0,-48.5849	0/1:47:20,27:20:712:27:953:-71.9349,0,-50.2582	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:129:50,79:50:1792:79:2813:-214.576,0,-122.73	0/1:91:43,48:43:1548:48:1708:-126.612,0,-112.219	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/1:56:26,30:26:936:30:1064:-79.214,0,-67.7018	0/0:99:92,7:92:3300:7:248:0,-7.13777,-274.554	0/1:24:13,11:13:464:11:384:-27.67,0,-34.8728	0/0:243:243,0:243:8684:0:0:0,-73.1503,-781.524	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/0:148:148,0:148:5292:0:0:0,-44.5524,-476.416	0/0:146:146,0:146:5221:0:0:0,-43.9504,-470.027	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400	0/0:146:146,0:146:5233:0:0:0,-43.9504,-471.105	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:109:53,56:53:1900:56:1992:-146.742,0,-138.466	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/1:112:54,58:54:1940:58:2072:-153.035,0,-141.161	0/1:32:17,15:17:612:15:532:-38.5801,0,-45.7805	0/1:40:20,20:20:716:20:705:-51.7325,0,-52.7265	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/1:156:68,88:68:2432:88:3126:-234.604,0,-172.175	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.419	0/0:90:89,1:89:3192:1:36:0,-23.4944,-283.905	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:52:21,31:21:756:31:1093:-83.0241,0,-52.7137	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:108:54,54:54:1929:54:1887:-137.592,0,-141.373	0/1:31:10,21:10:360:21:746:-58.1326,0,-23.4124	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:84:83,1:83:2976:1:36:0,-21.6882,-264.474	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:171:170,0:170:6049:0:0:0,-51.1751,-544.222	0/0:142:142,0:142:5080:0:0:0,-42.7463,-457.345	0/1:78:30,48:30:1076:48:1712:-130.885,0,-73.6725	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.343	0/0:137:137,0:137:4900:0:0:0,-41.2411,-441.152	0/1:93:21,72:21:752:72:2555:-202.204,0,-40.0105	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:70:35,35:35:1252:35:1222:-89.2074,0,-91.913	0/1:19:8,11:8:284:11:396:-30.2632,0,-20.1838	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:108:56,52:56:1993:52:1856:-134.809,0,-147.126	0/1:112:56,56:56:1985:56:2016:-147.998,0,-145.207	0/1:100:48,52:48:1724:52:1822:-134.154,0,-125.342	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:84:84,0:84:2974:0:0:0,-25.2865,-267.891	0/0:102:102,0:102:3648:0:0:0,-30.7051,-328.525	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/1:34:16,18:16:572:18:648:-48.4169,0,-41.5784	0/1:58:29,29:29:1044:29:1044:-76.8151,0,-76.8151	0/1:87:44,43:44:1568:43:1532:-111.947,0,-115.222	0/1:26:11,15:11:396:15:525:-39.7513,0,-28.156	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	0/1:59:35,24:35:1244:24:849:-58.9676,0,-94.5039	0/1:42:14,28:14:500:28:1004:-78.0326,0,-32.6929	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492
chr07	26485128	.	C	T	103169	PASS	AB=0.453704;ABP=51.2652;AC=144;AF=0.765957;AN=188;AO=4781;CIGAR=1X;DP=6216;DPB=6216;DPRA=66.828;EPP=10341.4;EPPR=3090.9;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.9902;MQMR=59.9819;NS=94;NUMALT=1;ODDS=2.67783;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171262;QR=51151;RO=1434;RPL=4767;RPP=10263.6;RPPR=3065;RPR=14;RUN=1;SAF=4772;SAP=10306.8;SAR=9;SRF=1431;SRP=3090.9;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:11,15:11:396:15:533:-40.4763,0,-28.156	0/1:130:70,60:70:2457:60:2148:-154.454,0,-182.248	0/1:125:74,51:74:2635:51:1832:-127.532,0,-199.768	1/1:123:0,123:0:0:123:4387:-395.002,-37.0267,0	1/1:38:1,37:1:36:37:1332:-116.584,-7.84087,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:88:46,42:46:1652:42:1504:-109.164,0,-122.478	1/1:117:0,117:0:0:117:4185:-376.83,-35.2205,0	0/1:49:28,21:28:1004:21:741:-52.262,0,-75.9172	0/1:80:42,38:42:1512:38:1354:-98.0774,0,-112.292	1/1:38:0,38:0:0:38:1344:-121.258,-11.4391,0	0/1:52:26,26:26:919:26:930:-68.3648,0,-67.3726	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:44:24,20:24:851:20:720:-51.8835,0,-63.6641	0/1:47:27,20:27:972:20:720:-50.9804,0,-73.6495	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:130:80,50:80:2863:50:1800:-123.148,0,-218.773	0/1:90:48,42:48:1692:42:1512:-109.282,0,-125.471	1/1:43:0,42:0:0:42:1512:-136.015,-12.6433,0	0/1:57:30,27:30:1072:27:965:-70.0079,0,-79.6337	1/1:101:8,93:8:288:93:3334:-274.01,-4.13662,0	0/1:25:10,15:10:356:15:536:-41.0491,0,-24.8555	1/1:247:0,247:0:0:247:8873:-798.548,-74.3544,0	1/1:110:0,110:0:0:110:3939:-354.7,-33.1133,0	0/1:23:17,6:17:608:6:216:-12.8668,0,-48.1283	1/1:150:3,147:3:108:147:5279:-465.169,-35.0793,0	1/1:150:0,150:0:0:150:5378:-484.149,-45.1545,0	1/1:76:0,76:0:0:76:2713:-244.412,-22.8783,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:126:0,126:0:0:126:4507:-405.759,-37.9298,0	1/1:147:0,147:0:0:147:5267:-474.165,-44.2514,0	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:106:55,51:55:1967:51:1832:-133.252,0,-145.395	1/1:21:0,21:0:0:21:732:-66.1987,-6.32163,0	0/1:117:61,56:61:2196:56:2008:-145.773,0,-162.685	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	0/1:41:21,20:21:756:20:720:-52.7865,0,-56.025	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:78:0,78:0:0:78:2770:-249.541,-23.4803,0	0/1:158:88,70:88:3151:70:2516:-179.129,0,-236.252	1/1:66:0,66:0:0:66:2348:-211.577,-19.868,0	1/1:95:1,94:1:36:94:3367:-299.648,-24.9996,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:74:0,74:0:0:74:2655:-239.195,-22.2762,0	0/1:55:33,22:33:1176:22:788:-54.6881,0,-89.5911	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:107:53,54:53:1888:54:1931:-141.856,0,-137.988	0/1:33:22,11:22:792:11:392:-25.6861,0,-61.6717	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:85:1,84:1:36:84:3012:-267.713,-21.9893,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:171:1,170:1:36:170:6054:-541.363,-47.8779,0	1/1:145:0,145:0:0:145:5194:-467.597,-43.6494,0	0/1:81:49,32:49:1756:32:1126:-77.2632,0,-133.941	1/1:58:1,57:1:32:57:1986:-175.809,-14.2604,0	1/1:141:0,141:0:0:141:5057:-455.273,-42.4452,0	0/1:100:78,22:78:2768:22:792:-41.5027,0,-219.257	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:52:0,52:0:0:52:1854:-167.139,-15.6536,0	0/1:70:35,35:35:1242:35:1256:-92.2732,0,-91.011	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	1/1:46:0,46:0:0:46:1651:-148.879,-13.8474,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:107:52,55:52:1864:55:1969:-145.274,0,-135.829	0/1:113:57,56:57:2033:56:2012:-147.337,0,-149.224	0/1:100:52,48:52:1853:48:1728:-125.702,0,-136.945	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:98:0,98:0:0:98:3524:-317.368,-29.5009,0	1/1:85:0,85:0:0:85:3060:-275.628,-25.5876,0	1/1:103:0,103:0:0:103:3700:-333.201,-31.0061,0	1/1:82:0,82:0:0:82:2938:-264.653,-24.6845,0	0/1:37:19,18:19:675:18:644:-47.1525,0,-49.9388	0/1:59:30,29:30:1080:29:1044:-76.514,0,-79.7525	0/1:94:47,47:47:1636:47:1692:-124.27,0,-119.189	0/1:26:15,11:15:536:11:396:-28.156,0,-40.748	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:53:0,53:0:0:53:1894:-170.736,-15.9546,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:60:24,36:24:856:36:1292:-98.522,0,-59.2993	0/1:43:28,15:28:989:15:540:-35.9922,0,-76.3777	1/1:79:1,78:1:36:78:2804:-249.001,-20.1831,0	1/1:42:0,42:0:0:42:1503:-135.564,-12.6433,0
chr07	26485281	.	A	G	61780.6	PASS	AB=0.455522;ABP=31.7917;AC=144;AF=0.765957;AN=188;AO=2922;CIGAR=1X;DP=3850;DPB=3850;DPRA=16.7174;EPP=6348.05;EPPR=2000.77;GTI=0;LEN=1;MEANALT=1.04348;MQM=59.9781;MQMR=59.9978;NS=94;NUMALT=1;ODDS=4.40308;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104322;QR=33108;RO=924;RPL=2922;RPP=6348.05;RPPR=2000.77;RPR=0;RUN=1;SAF=0;SAP=6348.05;SAR=2922;SRF=0;SRP=2009.45;SRR=924;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:25,13:25:900:13:449:-29.2983,0,-69.8819	0/1:29:14,15:14:496:15:531:-39.392,0,-36.2444	0/1:44:23,21:23:815:21:756:-55.1219,0,-60.4254	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:76:35,41:35:1252:41:1454:-108.277,0,-90.1068	1/1:57:1,56:1:36:56:1999:-176.585,-13.5604,0	0/1:72:47,25:47:1684:25:879:-57.7518,0,-130.173	0/1:55:32,23:32:1152:23:824:-57.9267,0,-87.4335	1/1:20:0,19:0:0:19:671:-60.3563,-5.71957,0	0/1:66:38,28:38:1356:28:996:-70.0869,0,-102.473	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:25:11,14:11:392:14:500:-37.8104,0,-28.0943	0/1:40:18,22:18:648:22:788:-59.2036,0,-46.6107	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:20:0,20:0:0:20:712:-64.4061,-6.0206,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:54:32,22:32:1152:22:783:-54.5373,0,-87.7345	0/1:49:21,28:21:752:28:985:-74.2111,0,-53.2558	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:35:23,12:23:824:12:432:-28.6851,0,-63.9473	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	0/1:73:38,35:38:1360:35:1224:-88.4866,0,-100.725	1/1:136:0,135:0:0:135:4819:-433.185,-40.6391,0	1/1:94:0,94:0:0:94:3351:-301.806,-28.2968,0	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	1/1:82:0,82:0:0:82:2927:-263.664,-24.6845,0	1/1:54:0,54:0:0:54:1917:-172.805,-16.2556,0	1/1:47:0,47:0:0:47:1670:-150.587,-14.1484,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:153:3,150:3:108:150:5364:-472.815,-35.9824,0	1/1:69:0,68:0:0:68:2423:-217.966,-20.47,0	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:35:22,13:22:792:13:468:-31.9236,0,-61.0696	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:75:34,41:34:1224:41:1463:-109.388,0,-87.8898	0/1:26:11,15:11:396:15:536:-40.748,0,-28.156	0/1:36:19,17:19:668:17:608:-44.2149,0,-49.6086	1/1:58:1,57:1:36:57:2029:-179.283,-13.8615,0	1/1:35:0,35:0:0:35:1252:-112.984,-10.5361,0	0/1:86:46,40:46:1652:40:1432:-103.289,0,-123.08	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:42:20,22:20:720:22:792:-58.9624,0,-52.4855	0/1:36:22,14:22:784:14:486:-33.2309,0,-60.0468	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:13:0,13:0:0:13:447:-40.5577,-3.91339,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:56:0,56:0:0:56:1995:-179.823,-16.8577,0	0/1:6:3,3:3:104:3:103:-7.80342,0,-7.89663	1/1:56:0,56:0:0:56:2000:-180.273,-16.8577,0	1/1:99:1,98:1:36:98:3516:-313.051,-26.2037,0	0/1:25:15,10:15:540:10:360:-25.2186,0,-41.4108	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:56:1,55:1:36:55:1964:-173.437,-13.2594,0	0/1:64:41,23:41:1468:23:824:-55.2174,0,-113.15	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:16:0,16:0:0:16:572:-51.8119,-4.81648,0	0/1:46:29,17:29:1027:17:612:-41.5661,0,-78.8944	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	1/1:94:0,94:0:0:94:3366:-303.156,-28.2968,0	1/1:58:0,58:0:0:58:2067:-186.3,-17.4597,0	0/1:61:41,20:41:1476:20:712:-46.0438,0,-114.773	0/1:55:17,38:17:612:38:1364:-106.504,0,-38.8568	0/1:59:31,28:31:1116:28:996:-72.1941,0,-82.9909	1/1:40:0,39:0:0:39:1398:-125.758,-11.7402,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:84:0,84:0:0:84:2993:-269.602,-25.2865,0	1/1:50:0,50:0:0:50:1791:-161.472,-15.0515,0	0/1:53:29,24:29:1044:24:856:-61.3994,0,-78.3202	0/1:17:13,4:13:468:4:144:-8.19611,0,-37.3421	0/1:88:43,45:43:1544:45:1612:-118.879,0,-112.762	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	1/1:49:0,49:0:0:49:1745:-157.332,-14.7505,0	1/1:44:0,44:0:0:44:1580:-142.488,-13.2453,0	0/1:21:9,12:9:324:12:423:-32.0834,0,-23.1842	0/1:48:26,22:26:932:22:783:-56.3435,0,-69.7494	0/1:41:25,16:25:882:16:572:-39.4712,0,-67.3543	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0
chr07	26487791	.	A	G	30589.5	PASS	AB=0.517965;ABP=12.7629;AC=43;AF=0.231183;AN=186;AO=1828;CIGAR=1X;DP=8437;DPB=8437;DPRA=0.989455;EPP=3963.78;EPPR=14343.4;GTI=1;LEN=1;MEANALT=1.02041;MQM=59.9995;MQMR=59.9802;NS=93;NUMALT=1;ODDS=0.0119302;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65139;QR=236285;RO=6608;RPL=0;RPP=3972.46;RPPR=14352.1;RPR=1828;RUN=1;SAF=1827;SAP=3963.78;SAR=1;SRF=6607;SRP=14343.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.4848	0/1:159:75,84:75:2692:84:2993:-221.739,0,-193.298	0/1:92:39,53:39:1385:53:1892:-142.864,0,-97.2521	0/0:189:189,0:189:6761:0:0:0,-56.8947,-608.562	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:146:65,81:65:2332:81:2881:-215.576,0,-166.189	0/0:131:131,0:131:4688:0:0:0,-39.4349,-421.89	0/1:129:65,64:65:2308:64:2300:-168.428,0,-169.149	0/1:107:51,56:51:1828:56:2008:-148.783,0,-132.591	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:80:40,40:40:1440:40:1417:-103.743,0,-105.815	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/1:123:64,59:64:2300:59:2112:-153.322,0,-170.234	0/1:61:25,36:25:896:36:1280:-97.1404,0,-62.5975	0/0:58:56,2:56:2001:2:72:0,-10.623,-173.525	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.544	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:111:62,49:62:2201:49:1752:-124.55,0,-164.939	0/1:184:102,82:102:3641:82:2948:-210.163,0,-272.504	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:53:19,34:19:684:34:1190:-91.4464,0,-45.9357	0/0:134:126,8:126:4516:8:288:0,-14.0706,-380.34	0/1:61:29,32:29:1040:32:1114:-82.2003,0,-75.4216	0/0:299:297,2:297:10648:2:72:0,-83.1712,-951.391	0/0:216:216,0:216:7728:0:0:0,-65.0225,-695.553	0/1:61:36,25:36:1292:25:888:-61.8762,0,-98.2209	0/0:202:202,0:202:7187:0:0:0,-60.8081,-646.886	0/0:149:145,4:145:5181:4:140:0,-31.9089,-453.485	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.684	.:.:.:.:.:.:.:.	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:233:233,0:233:8352:0:0:0,-70.14,-751.685	0/0:117:117,0:117:4177:0:0:0,-35.2205,-376.111	0/1:50:34,16:34:1216:16:561:-35.7656,0,-94.6951	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:133:75,58:75:2692:58:2061:-145.722,0,-202.487	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/1:73:24,49:24:856:49:1727:-133.738,0,-55.3813	0/1:84:36,47:36:1296:47:1676:-125.782,0,-91.5986	0/1:77:42,35:42:1512:35:1252:-89.8058,0,-113.195	0/0:93:89,4:89:3184:4:144:0,-14.6822,-273.47	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.647	0/1:110:56,54:56:2012:54:1921:-140.052,0,-148.24	0/0:95:95,0:95:3373:0:0:0,-28.5978,-303.786	0/0:146:146,0:146:5205:0:0:0,-43.9504,-468.576	0/0:181:181,0:181:6429:0:0:0,-54.4864,-578.702	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:109:109,0:109:3884:0:0:0,-32.8123,-349.756	0/1:60:24,36:24:860:36:1284:-97.8016,0,-59.66	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:101:51,50:51:1821:50:1784:-130.439,0,-133.765	0/1:37:23,14:23:820:14:496:-33.8362,0,-62.9844	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:124:124,0:124:4440:0:0:0,-37.3277,-399.771	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/0:208:208,0:208:7417:0:0:0,-62.6142,-667.578	0/0:231:231,0:231:8276:0:0:0,-69.5379,-744.849	0/1:93:34,59:34:1224:59:2104:-161.633,0,-82.4713	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:121:120,1:120:4288:1:36:0,-32.8264,-382.5	0/1:126:45,81:45:1616:81:2896:-222.946,0,-107.8	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:83:45,38:45:1608:38:1345:-96.3627,0,-120.024	0/1:22:8,14:8:288:14:500:-38.7135,0,-19.6447	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/1:280:122,158:122:4360:158:5646:-423.97,0,-308.287	0/1:137:75,62:75:2684:62:2170:-154.322,0,-200.564	0/1:60:24,36:24:864:36:1292:-98.522,0,-60.0208	0/0:134:134,0:134:4756:0:0:0,-40.338,-428.203	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:106:106,0:106:3781:0:0:0,-31.9092,-340.488	0/0:77:77,0:77:2741:0:0:0,-23.1793,-246.931	0/0:161:161,0:161:5748:0:0:0,-48.4658,-517.438	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511	0/1:57:32,25:32:1137:25:900:-64.1623,0,-85.4783	0/1:95:55,40:55:1976:40:1432:-100.58,0,-149.517	0/1:155:76,79:76:2720:79:2824:-207.739,0,-198.384	0/1:45:25,20:25:892:20:720:-51.5824,0,-67.0533	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:33:16,17:16:576:17:597:-44.1221,0,-42.241	0/1:82:36,46:36:1296:46:1648:-123.924,0,-92.2595	0/1:73:27,46:27:968:46:1628:-124.834,0,-65.4622	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:86:85,1:85:3021:1:36:0,-22.2903,-268.522
chr07	26538627	.	A	G	97846.4	PASS	AB=0.500059;ABP=3.01056;AC=44;AF=0.234043;AN=188;AO=4240;CIGAR=1X;DP=18335;DPB=18335;DPRA=1.37044;EPP=24.3235;EPPR=498.947;GTI=0;LEN=1;MEANALT=1.03571;MQM=59.9408;MQMR=59.9581;NS=94;NUMALT=1;ODDS=0.570546;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151035;QR=502799;RO=14092;RPL=4159;RPP=8519.94;RPPR=29017.6;RPR=81;RUN=1;SAF=1937;SAP=71.6145;SAR=2303;SRF=5964;SRP=724.61;SRR=8128;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:19,19:19:680:19:671:-49.2704,0,-50.09	0/1:126:69,57:69:2480:57:2024:-144.178,0,-185.523	0/1:266:111,155:111:3984:155:5497:-414.784,0,-278.569	0/0:520:516,4:516:18410:4:144:0,-143.222,-1643.14	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:254:142,112:142:5056:112:3986:-282.468,0,-378.716	0/0:128:128,0:128:4587:0:0:0,-38.5318,-412.924	0/1:172:57,115:57:2027:115:4098:-317.228,0,-130.92	0/1:246:118,128:118:4236:128:4584:-338.671,0,-307.365	0/0:164:164,0:164:5851:0:0:0,-49.3689,-526.628	0/1:139:73,66:73:2554:66:2355:-170.357,0,-188.265	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:186:87,99:87:3116:99:3528:-261.738,0,-224.675	0/1:220:111,109:111:3967:109:3910:-285.866,0,-290.994	0/0:175:174,1:174:6236:1:36:0,-49.082,-557.692	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:401:211,190:211:7540:190:6789:-490.366,0,-557.93	0/1:411:211,200:211:7529:200:7108:-515.355,0,-553.909	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:241:132,109:132:4707:109:3882:-277.027,0,-351.222	0/1:157:137,20:137:4903:20:699:-15.9648,0,-394.159	0/1:100:61,39:61:2184:39:1379:-94.3004,0,-166.723	0/0:573:569,4:569:20317:4:144:0,-159.177,-1814.72	0/0:717:717,0:717:25579:0:0:0,-215.838,-2301.33	0/1:123:70,53:70:2492:53:1892:-133.531,0,-187.504	0/0:588:588,0:588:20996:0:0:0,-177.006,-1889.11	0/0:238:235,3:235:8378:3:104:0,-61.9423,-744.326	0/0:309:308,0:308:10972:0:0:0,-92.7172,-987.014	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.174	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:543:542,1:542:19308:1:36:0,-159.861,-1733.66	0/0:188:186,2:186:6656:2:72:0,-49.7569,-592.278	0/1:46:26,20:26:936:20:720:-51.2814,0,-70.7121	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:405:187,218:187:6680:218:7815:-581.456,0,-479.362	0/0:77:77,0:77:2734:0:0:0,-23.1793,-246.3	0/1:154:81,73:81:2892:73:2600:-187.89,0,-214.158	0/1:226:116,110:116:4151:110:3910:-284.063,0,-305.74	0/1:194:99,95:99:3508:95:3392:-247.067,0,-257.531	0/0:195:195,0:195:6945:0:0:0,-58.7008,-625.095	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.873	0/1:379:186,193:186:6632:193:6849:-502.392,0,-482.869	0/0:181:181,0:181:6458:0:0:0,-54.4864,-581.305	0/0:328:328,0:328:11743:0:0:0,-98.7378,-1056.72	0/0:276:276,0:276:9835:0:0:0,-83.0843,-885.098	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:136:136,0:136:4860:0:0:0,-40.9401,-437.182	0/1:107:45,62:45:1612:62:2164:-162.805,0,-113.16	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:354:214,140:214:7656:140:4948:-338.901,0,-582.509	0/1:93:48,45:48:1700:45:1599:-116.204,0,-125.287	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:231:230,1:230:8191:1:36:0,-65.9397,-733.505	0/0:269:263,6:263:9373:6:216:0,-61.1866,-823.747	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.5363	0/0:321:321,0:321:11450:0:0:0,-96.6306,-1030.38	0/0:381:376,5:376:13387:5:180:0,-98.1404,-1188.07	0/1:152:73,79:73:2604:79:2812:-207.564,0,-188.852	0/0:184:184,0:184:6543:0:0:0,-55.3895,-588.955	0/0:403:400,3:400:14230:3:108:0,-111.24,-1270.39	0/1:404:117,286:117:4172:286:10187:-795.004,0,-253.989	0/1:107:58,49:58:2070:49:1748:-125.394,0,-154.359	0/0:79:78,1:78:2775:1:32:0,-20.5821,-246.791	0/1:215:103,112:103:3671:112:3983:-293.938,0,-265.873	0/1:45:33,12:33:1184:12:428:-25.3125,0,-93.322	0/0:147:147,0:147:5243:0:0:0,-44.2514,-471.903	0/0:137:137,0:137:4881:0:0:0,-41.2411,-439.443	0/1:586:311,274:311:11132:274:9783:-703.887,0,-825.307	0/1:393:182,211:182:6488:211:7484:-555.3,0,-465.701	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.145	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:252:249,3:249:8899:3:108:0,-65.7844,-790.82	0/0:109:109,0:109:3890:0:0:0,-32.8123,-350.26	0/0:490:490,0:490:17501:0:0:0,-147.505,-1574.37	0/0:254:254,0:254:9053:0:0:0,-76.4616,-814.735	0/1:205:107,98:107:3819:98:3490:-252.6,0,-282.196	0/1:222:123,99:123:4375:99:3552:-253.059,0,-327.098	0/1:391:207,184:207:7394:184:6570:-473.675,0,-547.799	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/0:86:86,0:86:3057:0:0:0,-25.8886,-275.042	0/1:104:48,56:48:1720:56:2000:-148.967,0,-123.778	0/1:253:128,125:128:4565:125:4472:-326.489,0,-334.855	0/1:207:59,148:59:2087:148:5259:-411.132,0,-125.787	0/0:330:330,0:330:11677:0:0:0,-99.3399,-1050.8	0/0:314:314,0:314:11219:0:0:0,-94.5234,-1009.6
chr07	26538641	.	TGAG	GGAT,GGAG	233943	PASS	AB=0.495866,0.498912;ABP=3.69255,3.05755;AC=144,44;AF=0.765957,0.234043;AN=188;AO=8374,2297;CIGAR=1X2M1X,1X3M;DP=10727;DPB=10727;DPRA=0,0.891086;EPP=17456.1,4759.12;EPPR=9.52472;GTI=3;LEN=4,1;MEANALT=2.01064,2.47826;MQM=59.9159,59.909;MQMR=60;NS=94;NUMALT=2;ODDS=1.39978;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=295381,81790;QR=84;RO=3;RPL=8374,2297;RPP=18186.9,4990.88;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=85,27;SAP=17456.1,4759.12;SAR=8289,2270;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:37:0,20,17:0:0:20,17:704,612:-107.604,-50.2959,-44.2753,-57.6638,0,-52.5463	1/2:129:0,71,58:0:0:71,58:2485,2068:-371.059,-168.928,-147.555,-202.484,0,-185.025	1/2:268:0,114,154:0:0:114,154:3997,5483:-772.401,-447.24,-412.923,-325.513,0,-279.155	1/1:342:0,341,0:0:0:341,0:12064,0:-1084.76,-102.651,0,-1084.76,-102.651,-1084.76	1/1:18:0,18,0:0:0:18,0:640,0:-57.9296,-5.41854,0,-57.9296,-5.41854,-57.9296	1/1:29:0,29,0:0:0:29,0:1012,0:-91.3894,-8.72987,0,-91.3894,-8.72987,-91.3894	1/2:86:0,46,40:0:0:46,40:1595,1419:-245.597,-115.965,-102.118,-129.982,0,-117.941	1/1:133:0,132,0:0:0:132,0:4622,0:-415.777,-39.736,0,-415.777,-39.736,-415.777	1/2:175:0,61,114:0:0:61,114:2126,4059:-503.917,-331.181,-312.818,-173.086,0,-138.769	1/2:109:0,60,49:0:0:60,49:2129,1756:-317.034,-143.574,-125.512,-173.817,0,-159.066	1/1:92:0,90,0:0:0:90,0:3174,0:-285.621,-27.0927,0,-285.621,-27.0927,-285.621	1/2:139:0,72,65:0:0:72,65:2529,2315:-394.53,-188.695,-167.021,-205.848,0,-186.281	1/1:88:0,88,0:0:0:88,0:3131,0:-282.017,-26.4906,0,-282.017,-26.4906,-282.017	1/2:72:0,36,35:0:0:36,35:1280,1260:-207.116,-102.808,-91.971,-104.306,0,-93.7701	1/2:112:0,58,54:0:0:58,54:2061,1928:-325.486,-157.541,-140.081,-168.301,0,-152.046	1/1:95:0,95,0:0:0:95,0:3370,0:-303.518,-28.5979,0,-303.518,-28.5979,-303.518	1/1:42:0,42,0:0:0:42,0:1485,0:-133.943,-12.6433,0,-133.943,-12.6433,-133.943	1/1:38:0,38,0:0:0:38,0:1331,0:-120.088,-11.4391,0,-120.088,-11.4391,-120.088	1/1:40:0,39,0:0:0:39,0:1393,0:-125.309,-11.7402,0,-125.309,-11.7402,-125.309	1/2:176:0,99,76:0:0:99,76:3499,2708:-505.693,-220.727,-190.925,-284.962,0,-262.084	1/2:201:0,104,96:0:0:104,96:3574,3378:-564.979,-274.772,-243.465,-290.265,0,-261.366	1/1:30:0,29,0:0:0:29,0:1024,0:-92.1502,-8.72987,0,-92.1502,-8.72987,-92.1502	1/2:168:0,90,75:0:0:90,75:3181,2679:-477.488,-218.431,-191.338,-259.066,0,-236.488	1/2:82:0,73,8:0:0:73,8:2574,284:-232.713,-23.1358,-1.16065,-209.573,0,-207.165	1/2:69:0,42,27:0:0:42,27:1472,960:-198.361,-78.5839,-65.9406,-120.13,0,-112.002	1/1:317:0,317,0:0:0:317,0:11200,0:-1007.91,-95.4265,0,-1007.91,-95.4265,-1007.91	1/1:454:0,449,0:0:0:449,0:15826,0:-1423.69,-135.162,0,-1423.69,-135.162,-1423.69	1/2:62:0,36,26:0:0:36,26:1272,924:-179.241,-75.6509,-64.8138,-103.944,0,-96.1175	1/1:372:0,371,0:0:0:371,0:13139,0:-1181.97,-111.682,0,-1181.97,-111.682,-1181.97	1/1:94:0,94,0:0:0:94,0:3271,0:-294.613,-28.2968,0,-294.613,-28.2968,-294.613	1/1:185:0,185,0:0:0:185,0:6482,0:-583.469,-55.6906,0,-583.469,-55.6906,-583.469	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:29:0,29,0:0:0:29,0:1027,0:-92.6674,-8.72987,0,-92.6674,-8.72987,-92.6674	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:8:0,8,0:0:0:8,0:284,0:-25.9035,-2.40824,0,-25.9035,-2.40824,-25.9035	1/2:10:0,5,5:0:0:5,5:180,180:-29.734,-15.0469,-13.5418,-15.0469,0,-13.5418	1/1:254:0,253,0:0:0:253,0:9002,0:-809.896,-76.1606,0,-809.896,-76.1606,-809.896	1/1:76:0,75,0:0:0:75,0:2604,0:-234.318,-22.5773,0,-234.318,-22.5773,-234.318	1/2:49:0,28,21:0:0:28,21:983,731:-139.794,-59.7888,-51.36,-80.3545,0,-74.0329	1/2:4:0,2,1:0:0:2,1:62,36:-7.88869,-2.93742,-2.33536,-4.94295,0,-4.64192	1/2:219:0,84,132:0:0:84,132:2957,4723:-625.852,-385.128,-359.842,-240.719,0,-200.983	1/1:39:0,38,0:0:0:38,0:1353,0:-121.711,-11.4391,0,-121.711,-11.4391,-121.711	1/2:93:0,50,43:0:0:50,43:1736,1536:-266.705,-125.589,-110.537,-141.468,0,-128.524	1/2:69:1,34,34:1:30:34,34:1199,1216:-194.136,-96.813,-88.9749,-95.2805,0,-87.4425	1/2:85:0,48,37:0:0:48,37:1674,1320:-244.076,-107.935,-93.4851,-136.495,0,-125.357	1/1:97:0,95,0:0:0:95,0:3349,0:-301.275,-28.5979,0,-301.275,-28.5979,-301.275	1/1:74:0,74,0:0:0:74,0:2600,0:-234.239,-22.2762,0,-234.239,-22.2762,-234.239	1/2:231:0,112,119:0:0:112,119:3952,4247:-668.159,-346.352,-312.637,-322.161,0,-286.338	1/1:108:0,108,0:0:0:108,0:3785,0:-340.852,-32.5112,0,-340.852,-32.5112,-340.852	1/1:157:0,157,0:0:0:157,0:5517,0:-496.659,-47.2617,0,-496.659,-47.2617,-496.659	1/1:124:0,124,0:0:0:124,0:4385,0:-394.829,-37.3277,0,-394.829,-37.3277,-394.829	1/2:9:0,5,4:0:0:5,4:175,144:-26.3423,-12.1095,-10.6043,-14.5882,0,-13.3841	1/1:133:0,131,0:0:0:131,0:4648,0:-417.568,-39.4349,0,-417.568,-39.4349,-417.568	1/2:82:0,37,45:0:0:37,45:1305,1607:-237.623,-131.365,-120.227,-106.612,0,-93.0659	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:211:0,120,91:0:0:120,91:4223,3247:-608.705,-264.928,-228.804,-344.132,0,-316.738	1/2: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chr07	26538719	.	A	C	125899	PASS	AB=0.308071;ABP=1560.89;AC=141;AF=0.75;AN=188;AO=6373;CIGAR=1X;DP=10008;DPB=10008;DPRA=9.04348;EPP=13841.8;EPPR=7894.14;GTI=9;LEN=1;MEANALT=1.01087;MQM=46.0028;MQMR=59.8726;NS=94;NUMALT=1;ODDS=0.737866;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226351;QR=129175;RO=3634;RPL=6371;RPP=13824.4;RPPR=58.2329;RPR=2;RUN=1;SAF=6371;SAP=13824.4;SAR=2;SRF=1969;SRP=58.2329;SRR=1665;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1688	0/1:227:131,96:131:4676:96:3425:-235.354,0,-352.665	0/1:202:156,46:156:5568:46:1639:-84.2981,0,-440.398	1/1:150:2,148:2:72:148:5248:-460.13,-38.3178,0	1/1:2:0,2:0:0:2:72:-6.63422,-0.60206,0	1/1:37:0,37:0:0:37:1320:-116.472,-11.1381,0	0/1:232:180,52:180:6376:52:1844:-93.6722,0,-504.094	1/1:153:2,151:2:72:151:5350:-466.787,-39.2209,0	0/1:89:64,25:64:2267:25:891:-52.1814,0,-177.501	0/1:183:110,73:110:3889:73:2602:-176.807,0,-294.263	1/1:44:0,44:0:0:44:1572:-138.998,-13.2453,0	0/1:110:72,38:72:2563:38:1360:-87.0616,0,-197.805	1/1:81:0,81:0:0:81:2861:-252.298,-24.3834,0	0/1:95:65,30:65:2308:30:1072:-64.2923,0,-179.269	0/1:115:69,46:69:2467:46:1612:-109.111,0,-187.656	1/1:57:0,57:0:0:57:2035:-175.36,-17.1587,0	1/1:87:0,87:0:0:87:3088:-272.371,-26.1896,0	1/1:88:0,88:0:0:88:3127:-276.97,-26.4906,0	1/1:49:0,49:0:0:49:1710:-151.691,-14.7505,0	0/1:287:216,70:216:7678:70:2489:-134.522,0,-604.606	0/1:250:179,71:179:6325:71:2522:-143.341,0,-494.086	1/1:30:0,30:0:0:30:1071:-96.2814,-9.0309,0	0/1:148:117,31:117:4134:31:1100:-53.3498,0,-327.686	0/1:74:11,63:11:392:63:2255:-171.666,0,-13.3376	0/0:36:33,3:33:1167:3:108:0,-1.09113,-95.5867	1/1:299:0,299:0:0:299:10574:-946.615,-90.008,0	1/1:161:0,161:0:0:161:5738:-496.291,-48.4658,0	0/1:73:50,23:50:1787:23:816:-49.4972,0,-139.137	1/1:200:0,200:0:0:200:7119:-637.318,-60.206,0	1/1:177:0,177:0:0:177:6306:-545.721,-53.2823,0	1/1:174:0,174:0:0:174:6193:-550.741,-52.3792,0	1/1:5:0,5:0:0:5:180:-16.0112,-1.50515,0	1/1:9:0,9:0:0:9:324:-28.5417,-2.70927,0	0/1:6:5,1:5:165:1:36:-1.74234,0,-13.3674	1/1:9:0,9:0:0:9:320:-28.7192,-2.70927,0	0/1:12:7,5:7:248:5:180:-12.7108,0,-19.0518	1/1:247:0,247:0:0:247:8785:-786.49,-74.3544,0	1/1:70:0,70:0:0:70:2480:-215.508,-21.0721,0	0/1:78:46,32:46:1625:32:1144:-77.1059,0,-122.685	1/1:2:0,2:0:0:2:72:-6.61332,-0.60206,0	0/1:145:109,36:109:3873:36:1288:-66.449,0,-304.952	1/1:41:0,41:0:0:41:1459:-127.339,-12.3422,0	0/1:62:49,13:49:1760:13:468:-22.4283,0,-140.012	0/1:120:79,41:79:2832:41:1460:-93.5637,0,-218.995	0/1:106:67,39:67:2340:39:1387:-91.5066,0,-177.584	1/1:56:0,56:0:0:56:1980:-177.133,-16.8577,0	1/1:48:0,48:0:0:48:1698:-151.041,-14.4494,0	0/1:184:149,35:149:5299:35:1256:-56.5595,0,-421.627	1/1:92:1,91:1:36:91:3211:-282.495,-24.0965,0	1/1:213:0,213:0:0:213:7602:-675.631,-64.1194,0	1/1:39:0,39:0:0:39:1355:-121.931,-11.7402,0	0/1:13:11,2:11:396:2:72:-2.88627,0,-32.0694	1/1:77:0,77:0:0:77:2733:-242.769,-23.1793,0	0/1:68:51,17:51:1815:17:612:-34.3619,0,-143.161	1/1:16:0,16:0:0:16:572:-49.8205,-4.81648,0	0/1:225:169,56:169:6028:56:2000:-106.183,0,-474.892	0/1:58:36,22:36:1270:22:774:-51.4536,0,-97.1416	1/1:4:0,4:0:0:4:144:-13.2705,-1.20412,0	1/1:25:0,25:0:0:25:900:-78.5706,-7.52575,0	1/1:56:0,56:0:0:56:1975:-170.922,-16.8577,0	1/1:125:1,124:1:36:124:4431:-390.34,-34.0305,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:291:0,291:0:0:291:10324:-922.259,-87.5997,0	1/1:138:6,132:6:212:132:4639:-392.836,-22.1173,0	0/1:88:64,24:64:2281:24:849:-47.115,0,-179.056	1/1:37:0,37:0:0:37:1320:-117.608,-11.1381,0	1/1:142:4,138:4:135:138:4910:-422.283,-30.2637,0	0/0:204:189,15:189:6733:15:536:0,-13.7695,-558.393	0/1:25:18,7:18:648:7:252:-14.7507,0,-51.0902	1/1:64:0,64:0:0:64:2274:-200.77,-19.2659,0	0/1:141:76,65:76:2724:65:2316:-165.239,0,-202.958	0/1:41:27,14:27:959:14:504:-32.6633,0,-74.2832	1/1:43:0,43:0:0:43:1517:-133.384,-12.9443,0	1/1:88:0,88:0:0:88:3114:-274.215,-26.4906,0	0/1:316:232,84:232:8211:84:2964:-163.382,0,-643.874	0/1:296:225,71:225:8032:71:2517:-133.965,0,-633.796	0/1:19:12,7:12:432:7:230:-15.0643,0,-33.5016	1/1:166:3,163:3:104:163:5797:-502.479,-40.2682,0	1/1:9:0,9:0:0:9:324:-28.6478,-2.70927,0	1/1:101:0,101:0:0:101:3599:-313.986,-30.404,0	1/1:61:0,61:0:0:61:2192:-194.2,-18.3628,0	1/1:243:0,243:0:0:243:8586:-762.74,-73.1503,0	1/1:125:0,125:0:0:125:4444:-393.148,-37.6288,0	0/1:101:71,30:71:2539:30:1076:-65.0723,0,-198.353	0/1:116:59,57:59:2104:57:2039:-145.049,0,-154.71	0/1:240:149,91:149:5265:91:3221:-212.303,0,-401.731	0/1:53:29,24:29:1031:24:843:-58.2667,0,-77.148	1/1:90:0,90:0:0:90:3220:-285.571,-27.0927,0	1/1:72:0,72:0:0:72:2524:-222.118,-21.6742,0	0/1:42:33,9:33:1176:9:315:-15.0548,0,-93.5012	0/1:101:77,24:77:2717:24:856:-43.1801,0,-214.227	0/1:128:98,30:98:3508:30:1064:-56.5829,0,-277.342	1/1:122:0,122:0:0:122:4322:-383.92,-36.7257,0	1/1:160:1,159:1:36:159:5646:-498.18,-44.5665,0
chr07	26548281	.	A	G	170026	PASS	AB=0.533585;ABP=31.5981;AC=147;AF=0.781915;AN=188;AO=7829;CIGAR=1X;DP=9203;DPB=9203;DPRA=0;EPP=17003.5;EPPR=2982.27;GTI=4;LEN=1;MEANALT=1.02128;MQM=59.9425;MQMR=59.9373;NS=94;NUMALT=1;ODDS=2.57307;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278566;QR=49040;RO=1372;RPL=0;RPP=17003.5;RPPR=2982.27;RPR=7829;RUN=1;SAF=0;SAP=17003.5;SAR=7829;SRF=0;SRP=2982.27;SRR=1372;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:25,8:25:877:8:280:-15.6047,0,-69.3112	0/1:163:69,94:69:2471:94:3336:-251.389,0,-173.575	0/1:128:55,73:55:1980:73:2593:-195.086,0,-139.943	1/1:239:0,239:0:0:239:8518:-766.461,-71.9462,0	1/1:156:1,155:1:36:155:5565:-497.329,-43.3624,0	1/1:54:0,54:0:0:54:1916:-172.714,-16.2556,0	0/1:112:58,53:58:2065:53:1891:-136.69,0,-152.345	1/1:244:0,244:0:0:244:8657:-779.128,-73.4513,0	0/1:76:38,38:38:1364:38:1327:-96.8479,0,-100.182	0/1:62:33,29:33:1184:29:1040:-75.2505,0,-88.2045	1/1:25:0,25:0:0:25:860:-77.7116,-7.52575,0	0/1:30:21,9:21:739:9:303:-18.5589,0,-57.7717	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:14:8,6:8:284:6:201:-14.2026,0,-21.6889	0/1:34:19,15:19:684:15:540:-38.7015,0,-51.6553	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:20:0,20:0:0:20:698:-63.1414,-6.0206,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:289:128,161:128:4566:161:5736:-428.581,0,-324.02	0/1:130:60,70:60:2152:70:2487:-184.95,0,-154.813	1/1:215:0,215:0:0:215:7627:-686.473,-64.7215,0	0/1:70:34,36:34:1209:36:1292:-95.5035,0,-88.042	1/1:45:1,44:1:36:44:1576:-138.533,-9.94808,0	0/1:129:69,60:69:2457:60:2131:-153.225,0,-182.55	1/1:446:0,446:0:0:446:15873:-1428.26,-134.259,0	1/1:230:0,230:0:0:230:8200:-738.009,-69.2369,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:359:1,358:1:36:358:12737:-1142.47,-104.471,0	1/1:175:0,175:0:0:175:6201:-558.179,-52.6803,0	1/1:232:0,232:0:0:232:8232:-740.89,-69.839,0	1/1:14:0,14:0:0:14:493:-44.7017,-4.21442,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:12:5,7:5:180:7:237:-18.0467,0,-12.9397	1/1:97:0,97:0:0:97:3453:-310.825,-29.1999,0	1/1:251:0,251:0:0:251:8960:-806.38,-75.5585,0	0/1:16:9,7:9:320:7:248:-17.8477,0,-24.3259	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:165:65,100:65:2336:100:3570:-271.836,0,-160.829	1/1:20:0,20:0:0:20:693:-62.6894,-6.0206,0	0/1:103:50,53:50:1791:53:1904:-140.632,0,-130.466	0/1:31:15,16:15:540:16:553:-40.7621,0,-39.6046	0/1:29:12,17:12:432:17:608:-46.3222,0,-30.4913	1/1:157:0,157:0:0:157:5603:-504.378,-47.2617,0	1/1:161:0,161:0:0:161:5754:-517.975,-48.4658,0	0/1:100:31,69:31:1095:69:2453:-190.92,0,-68.7561	1/1:154:0,154:0:0:154:5497:-494.853,-46.3586,0	1/1:109:0,109:0:0:109:3895:-350.744,-32.8123,0	1/1:184:0,184:0:0:184:6571:-591.47,-55.3895,0	0/1:24:9,15:9:324:15:536:-41.3501,0,-22.2811	1/1:249:0,249:0:0:249:8891:-800.126,-74.9565,0	0/1:59:16,43:16:576:43:1528:-120.052,0,-34.4142	1/1:23:0,23:0:0:23:809:-73.125,-6.92369,0	0/1:109:54,55:54:1936:55:1953:-143.231,0,-141.704	0/1:59:29,30:29:1044:30:1068:-78.6713,0,-76.514	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:35:0,35:0:0:35:1239:-111.805,-10.5361,0	1/1:75:0,75:0:0:75:2665:-240.095,-22.5773,0	1/1:73:1,72:1:36:72:2528:-224.172,-18.3769,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:276:0,276:0:0:276:9814:-883.207,-83.0843,0	1/1:204:6,198:6:216:198:7022:-612.257,-41.6196,0	0/1:51:21,30:21:756:30:1072:-81.4399,0,-53.0147	1/1:112:0,112:0:0:112:3964:-356.95,-33.7154,0	1/1:230:0,230:0:0:230:8183:-736.483,-69.2369,0	0/1:128:64,64:64:2296:64:2287:-167.559,0,-168.369	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:53:0,53:0:0:53:1900:-171.272,-15.9546,0	0/1:45:23,22:23:811:22:766:-55.7121,0,-59.7636	0/1:16:5,11:5:176:11:396:-31.1663,0,-11.3685	1/1:143:0,143:0:0:143:5055:-455.093,-43.0473,0	1/1:51:0,51:0:0:51:1807:-162.91,-15.3525,0	0/1:134:60,74:60:2135:74:2636:-197.018,0,-152.08	0/1:167:64,103:64:2295:103:3675:-280.682,0,-156.538	0/1:143:77,66:77:2768:66:2360:-169.611,0,-206.313	1/1:125:1,123:1:36:123:4407:-393.203,-34.0893,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:141:0,141:0:0:141:4994:-449.593,-42.4452,0	1/1:140:0,140:0:0:140:4967:-447.147,-42.1442,0	1/1:267:1,266:1:36:266:9468:-848.462,-76.7767,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	0/1:30:16,14:16:572:14:500:-36.3053,0,-42.7825	0/1:33:16,17:16:564:17:604:-44.7566,0,-41.1563	0/1:53:24,29:24:856:29:1036:-77.5993,0,-59.7722	0/1:46:24,22:24:856:22:779:-56.5847,0,-63.5137	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:28:16,12:16:572:12:413:-29.069,0,-43.3846	0/1:33:26,7:26:913:7:248:-12.7302,0,-72.55	1/1:181:0,181:0:0:181:6444:-579.823,-54.4864,0	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0
chr07	26561448	.	A	G	26087.6	PASS	AB=0.499402;ABP=3.01809;AC=44;AF=0.234043;AN=188;AO=1255;CIGAR=1X;DP=6530;DPB=6530;DPRA=0.768759;EPP=968.509;EPPR=5114.2;GTI=4;LEN=1;MEANALT=1.04545;MQM=53.2725;MQMR=59.5978;NS=94;NUMALT=1;ODDS=0.473505;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44789;QR=188531;RO=5273;RPL=254;RPP=968.509;RPPR=5114.2;RPR=1001;RUN=1;SAF=1255;SAP=2728.21;SAR=0;SRF=5273;SRP=11453.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:7,7:7:248:7:252:-18.7566,0,-18.4465	0/1:58:23,35:23:828:35:1256:-94.6793,0,-57.3762	0/1:81:32,49:32:1140:49:1730:-130.613,0,-78.1234	0/0:242:242,0:242:8661:0:0:0,-72.8493,-779.448	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.4744	0/1:94:60,34:60:2156:34:1216:-81.067,0,-166.003	0/0:100:100,0:100:3588:0:0:0,-30.103,-322.435	0/1:114:44,70:44:1565:70:2493:-189.18,0,-106.744	0/1:94:54,40:54:1906:40:1432:-100.611,0,-143.514	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:67:29,38:29:1036:38:1355:-101.735,0,-73.3604	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.605	0/1:26:14,12:14:500:12:428:-30.8907,0,-37.4809	0/1:42:19,23:19:684:23:817:-61.1199,0,-49.2471	0/0:31:31,0:31:1097:0:0:0,-9.33193,-98.9968	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.4713	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.7991	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.373	0/1:135:74,61:74:2644:61:2184:-155.847,0,-197.537	0/1:166:81,84:81:2893:84:2985:-217.376,0,-210.503	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.593	0/1:92:41,51:41:1472:51:1836:-137.704,0,-105.079	0/1:6:5,1:5:161:1:36:-1.76063,0,-12.9815	0/1:44:20,24:20:712:24:860:-63.9559,0,-51.159	0/0:268:268,0:268:9570:0:0:0,-80.676,-861.185	0/0:181:181,0:181:6469:0:0:0,-54.4864,-582.222	0/1:19:13,6:13:468:6:216:-13.647,0,-36.7401	0/0:274:274,0:274:9775:0:0:0,-82.4822,-879.564	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.17	0/0:61:61,0:61:2162:0:0:0,-18.3628,-194.831	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:2,2:2:72:2:72:-5.61541,0,-5.6326	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:11:9,2:9:324:2:72:-3.50233,0,-26.1945	0/0:107:107,0:107:3821:0:0:0,-32.2102,-344.055	0/0:90:90,0:90:3204:0:0:0,-27.0927,-288.562	0/1:30:12,18:12:432:18:648:-49.4735,0,-30.1821	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	0/1:126:63,63:63:2260:63:2238:-162.426,0,-165.446	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:71:33,38:33:1180:38:1345:-99.3602,0,-85.1065	0/1:36:21,15:21:752:15:540:-38.0642,0,-57.1668	0/1:34:15,19:15:540:19:680:-51.2395,0,-38.7015	0/0:75:75,0:75:2658:0:0:0,-22.5772,-239.365	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.112	0/1:148:79,69:79:2836:69:2453:-176.04,0,-210.916	0/0:106:106,0:106:3778:0:0:0,-31.9092,-340.209	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.714	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.135	0/1:6:5,1:5:180:1:32:-1.3921,0,-14.7459	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.264	0/1:55:21,34:21:752:34:1204:-91.2904,0,-51.4449	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4775	0/1:84:31,53:31:1112:53:1885:-142.199,0,-75.0993	0/1:37:18,19:18:648:19:680:-50.2415,0,-47.5114	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.291	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.378	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:208:208,0:208:7441:0:0:0,-62.6142,-669.556	0/0:125:124,1:124:4436:1:36:0,-34.0331,-395.809	0/1:40:20,20:20:720:20:720:-52.8219,0,-53.0876	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.609	0/0:158:158,0:158:5656:0:0:0,-47.5627,-508.672	0/1:103:45,58:45:1612:58:2061:-154.527,0,-114.362	0/1:11:4,7:4:144:7:248:-19.2167,0,-9.9892	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.006	0/1:23:11,12:11:396:12:432:-32.262,0,-29.0557	0/1:10:6,4:6:216:4:144:-10.2937,0,-16.7802	0/0:135:135,0:135:4818:0:0:0,-40.639,-432.792	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.571	0/1:116:54,62:54:1916:62:2224:-164.693,0,-137.754	0/1:198:138,60:138:4903:60:2141:-132.519,0,-381.792	0/1:30:19,11:19:684:11:396:-26.8614,0,-52.8397	0/0:106:106,0:106:3789:0:0:0,-31.9092,-341.122	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2658	0/0:101:101,0:101:3620:0:0:0,-30.404,-325.975	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.843	0/0:220:220,0:220:7880:0:0:0,-66.2266,-709.08	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.6956	0/1:46:15,31:15:540:31:1105:-85.7503,0,-35.0892	0/1:41:22,19:22:788:19:680:-48.8075,0,-58.9022	0/1:92:49,43:49:1752:43:1548:-111.691,0,-130.265	0/1:7:3,4:3:108:4:144:-11.153,0,-7.95952	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.4	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.475	0/1:16:9,7:9:320:7:252:-18.0048,0,-24.3259	0/1:44:23,20:23:828:20:716:-51.0749,0,-61.5405	0/1:38:11,27:11:396:27:961:-75.1286,0,-24.5436	0/0:131:131,0:131:4681:0:0:0,-39.4349,-421.423	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.454
chr07	26563252	.	GTGC	GTGT,TTGT	191582	PASS	AB=0.501119,0.494727;ABP=3.04431,3.76605;AC=143,45;AF=0.760638,0.239362;AN=188;AO=7097,1558;CIGAR=3M1X,1X2M1X;DP=8698;DPB=8698;DPRA=47.25,0.843565;EPP=14456.5,3164.1;EPPR=16.0391;GTI=5;LEN=1,4;MEANALT=1.81522,2.22917;MQM=55.3187,57.1547;MQMR=60;NS=94;NUMALT=2;ODDS=1.46804;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=249779,55162;QR=192;RO=6;RPL=112,26;RPP=14456.5,3164.1;RPPR=16.0391;RPR=6985,1532;RUN=1,1;SAF=0,0;SAP=15413.9,3386.16;SAR=7097,1558;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,24,6:0:0:24,6:856,209:-86.9955,-17.2635,-10.0388,-70.0806,0,-68.2744	1/2:122:0,54,68:0:0:54,68:1932,2398:-352.341,-194.984,-178.728,-157.712,0,-137.242	1/2:121:0,59,62:0:0:59,62:2082,2210:-349.707,-180.304,-162.543,-169.757,0,-151.093	1/1:262:0,258,2:0:0:258,2:9076,72:-814.419,-77.6657,0,-808.545,-71.7927,-807.943	1/1:65:0,65,0:0:0:65,0:2289,0:-206.069,-19.567,0,-206.069,-19.567,-206.069	1/1:64:0,64,0:0:0:64,0:2246,0:-202.16,-19.2659,0,-202.16,-19.2659,-202.16	1/2:146:0,80,66:0:0:80,66:2834,2340:-421.132,-190.645,-166.563,-230.84,0,-210.972	1/1:178:1,175,1:1:30:175,1:6149,36:-548.59,-50.2881,0,-545.954,-49.7203,-548.052	1/2:95:0,46,49:0:0:46,49:1582,1734:-269.685,-141.323,-127.475,-128.71,0,-113.959	1/2:124:0,65,59:0:0:65,59:2289,2089:-356.469,-170.263,-150.696,-186.559,0,-168.798	1/1:29:0,29,0:0:0:29,0:1024,0:-92.3032,-8.72987,0,-92.3032,-8.72987,-92.3032	1/2:43:0,18,25:0:0:18,25:648,898:-126.277,-73.5485,-68.1299,-53.0869,0,-45.5612	1/1:44:0,44,0:0:0:44,0:1555,0:-139.975,-13.2453,0,-139.975,-13.2453,-139.975	1/2:43:0,27,16:0:0:27,16:956,569:-124.42,-46.6428,-38.515,-78.1312,0,-73.3147	1/2:41:0,13,28:0:0:13,28:464,995:-119.182,-81.3829,-77.4695,-38.1549,0,-29.7261	1/1:41:0,40,0:0:0:40,0:1409,0:-125.57,-12.0412,0,-125.57,-12.0412,-125.57	1/1:37:0,37,0:0:0:37,0:1324,0:-119.261,-11.1381,0,-119.261,-11.1381,-119.261	1/1:55:0,55,0:0:0:55,0:1968,0:-176.865,-16.5567,0,-176.865,-16.5567,-176.865	1/1:48:0,48,0:0:0:48,0:1710,0:-153.735,-14.4494,0,-153.735,-14.4494,-153.735	1/2:156:0,88,67:0:0:88,67:3117,2377:-446.896,-193.184,-166.694,-253.713,0,-233.544	1/2:111:0,57,54:0:0:57,54:2016,1904:-318.744,-155.159,-138.001,-163.936,0,-147.681	1/1:133:0,133,0:0:0:133,0:4675,0:-420.244,-40.037,0,-420.244,-40.037,-420.244	1/2:82:0,57,24:0:0:57,24:2011,834:-231.102,-67.6443,-50.4856,-163.454,0,-156.23	1/2:53:0,47,6:0:0:47,6:1669,216:-152.499,-17.975,-3.82663,-134.883,0,-133.077	1/2:69:0,36,33:0:0:36,33:1296,1174:-201.428,-95.936,-85.0989,-105.849,0,-95.915	1/1:367:2,363,0:2:60:363,0:12591,0:-1125.66,-104.504,0,-1126.26,-109.274,-1131.05	1/1:203:0,202,0:0:0:202,0:7163,0:-643.545,-60.8081,0,-643.545,-60.8081,-643.545	1/2:17:0,10,7:0:0:10,7:360,240:-49.1827,-19.8219,-16.8116,-29.7104,0,-27.6032	1/1:285:0,285,0:0:0:285,0:9953,0:-894.392,-85.7936,0,-894.392,-85.7936,-894.392	1/1:123:0,122,0:0:0:122,0:4287,0:-385.347,-36.7257,0,-385.347,-36.7257,-385.347	1/1:118:1,117,0:1:30:117,0:4107,0:-365.794,-32.522,0,-366.095,-35.2205,-368.493	1/1:9:0,9,0:0:0:9,0:316,0:-28.6557,-2.70927,0,-28.6557,-2.70927,-28.6557	1/1:11:0,11,0:0:0:11,0:392,0:-35.5254,-3.31133,0,-35.5254,-3.31133,-35.5254	2/2:1:0,0,1:0:0:0,1:0,36:-3.59727,-3.59727,-3.59727,-0.30103,-0.30103,0	1/1:12:0,12,0:0:0:12,0:428,0:-38.8319,-3.61236,0,-38.8319,-3.61236,-38.8319	1/1:3:0,3,0:0:0:3,0:108,0:-10.0679,-0.90309,0,-10.0679,-0.90309,-10.0679	1/1:172:0,172,0:0:0:172,0:6074,0:-546.212,-51.7772,0,-546.212,-51.7772,-546.212	1/1:272:0,268,0:0:0:268,0:9450,0:-848.323,-80.676,0,-848.323,-80.676,-848.323	1/2:34:0,16,18:0:0:16,18:568,626:-97.3275,-51.1604,-46.3439,-46.5179,0,-41.0994	2/2:3:0,0,3:0:0:0,3:0,108:-10.0724,-10.0724,-10.0724,-0.90309,-0.90309,0	1/2:153:0,78,73:0:0:78,73:2735,2575:-431.53,-209.519,-186.038,-222.055,0,-200.08	1/1:17:0,17,0:0:0:17,0:612,0:-55.2801,-5.11751,0,-55.2801,-5.11751,-55.2801	1/2:94:0,41,53:0:0:41,53:1460,1864:-270.802,-151.921,-139.579,-119.235,0,-103.28	1/2:58:0,39,19:0:0:39,19:1377,669:-166.56,-54.8,-43.0599,-112.112,0,-106.393	1/2:44:0,22,22:0:0:22,22:773,777:-126.395,-63.612,-56.9894,-63.1348,0,-56.5121	1/1:116:0,116,0:0:0:116,0:4103,0:-368.986,-34.9195,0,-368.986,-34.9195,-368.986	1/1:96:0,96,0:0:0:96,0:3390,0:-305.101,-28.8989,0,-305.101,-28.8989,-305.101	1/2:189:0,86,101:0:0:86,101:2966,3581:-531.976,-291.503,-265.614,-240.47,0,-210.066	1/1:127:0,126,1:0:0:126,1:4337,36:-389.743,-37.9298,0,-386.807,-34.6335,-386.506	1/1:117:0,117,0:0:0:117,0:4073,0:-365.904,-35.2205,0,-365.904,-35.2205,-365.904	1/1:160:0,160,0:0:0:160,0:5594,0:-502.24,-48.1648,0,-502.24,-48.1648,-502.24	1/2:10:0,8,1:0:0:8,1:288,36:-26.4315,-2.94457,-0.536329,-23.4948,0,-23.1938	1/1:164:0,164,0:0:0:164,0:5803,0:-520.263,-49.3689,0,-520.263,-49.3689,-520.263	1/2:44:0,16,28:0:0:16,28:568,998:-127.929,-81.6809,-76.8645,-46.6029,0,-38.1741	1/1:8:0,8,0:0:0:8,0:265,0:-24.1583,-2.40824,0,-24.1583,-2.40824,-24.1583	1/2:100:0,56,44:0:0:56,44:1980,1559:-288.111,-127.059,-110.202,-161.405,0,-148.16	1/2:33:0,14,19:0:0:14,19:496,657:-93.9899,-53.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chr08	12749	.	TTG	ATA,TTA	141891	PASS	AB=0.441963,0.555108;ABP=82.9111,75.049;AC=147,41;AF=0.781915,0.218085;AN=188;AO=5115,1524;CIGAR=1X1M1X,2M1X;DP=6652;DPB=6652.67;DPRA=35.7527,0.981622;EPP=11023.4,3294.99;EPPR=0;GTI=1;LEN=3,1;MEANALT=1.60215,2.15909;MQM=59.9228,59.9974;MQMR=0;NS=94;NUMALT=2;ODDS=1.89902;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=68,0;PQR=0;PRO=0;QA=178976,54288;QR=0;RO=0;RPL=5105,1522;RPP=11023.4,3294.99;RPPR=0;RPR=10,2;RUN=1,1;SAF=5115,1524;SAP=11110.1,3312.33;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:65:0,31,34:0:0:31,34:1074,1212:-186.436,-99.1513,-89.8194,-87.6355,0,-77.4005	1/1:32:0,32,0:0:0:32,0:1097,0:-99.0321,-9.63296,0,-99.0321,-9.63296,-99.0321	1/2:99:0,47,52:0:0:47,52:1656,1864:-287.21,-152.386,-138.237,-135.179,0,-119.526	1/2:145:0,84,61:0:0:84,61:2931,2144:-413.256,-174.866,-149.579,-238.74,0,-220.377	1/2:31:0,16,15:0:0:16,15:551,536:-88.8052,-44.0594,-39.2429,-45.0968,0,-40.5813	1/2:28:0,8,20:0:0:8,20:286,712:-81.7064,-58.3861,-55.9778,-23.6772,0,-17.6566	1/1:50:0,50,0:0:0:50,0:1722,0:-155.261,-15.0515,0,-155.261,-15.0515,-155.261	1/1:89:0,89,0:0:0:89,0:3147,0:-283.459,-26.7917,0,-283.459,-26.7917,-283.459	1/1:74:0,74,0:0:0:74,0:2588,0:-233.172,-22.2762,0,-233.172,-22.2762,-233.172	1/1:63:0,63,0:0:0:63,0:2197,0:-197.996,-18.9649,0,-197.996,-18.9649,-197.996	1/2:49:0,17,32:0:0:17,32:610,1152:-144.113,-94.3563,-89.2388,-50.1153,0,-40.4824	1/1:74:0,74,0:0:0:74,0:2617,0:-235.769,-22.2762,0,-235.769,-22.2762,-235.769	1/1:58:0,58,0:0:0:58,0:2054,0:-185.131,-17.4597,0,-185.131,-17.4597,-185.131	1/2:103:0,50,53:0:0:50,53:1776,1881:-298.329,-153.612,-138.561,-145.072,0,-129.117	1/1:40:0,40,0:0:0:40,0:1415,0:-127.647,-12.0412,0,-127.647,-12.0412,-127.647	1/1:37:0,37,0:0:0:37,0:1295,0:-116.85,-11.1381,0,-116.85,-11.1381,-116.85	1/1:32:0,32,0:0:0:32,0:1142,0:-103.089,-9.63296,0,-103.089,-9.63296,-103.089	1/1:28:0,28,0:0:0:28,0:982,0:-88.6915,-8.42884,0,-88.6915,-8.42884,-88.6915	1/1:29:0,29,0:0:0:29,0:1020,0:-92.1105,-8.72987,0,-92.1105,-8.72987,-92.1105	1/1:128:0,127,0:0:0:127,0:4459,0:-401.098,-38.2308,0,-401.098,-38.2308,-401.098	1/1:39:0,39,0:0:0:39,0:1346,0:-121.435,-11.7402,0,-121.435,-11.7402,-121.435	1/2:93:0,23,70:0:0:23,70:795,2468:-265.896,-201.3,-194.377,-64.9428,0,-43.8707	1/1:128:0,128,0:0:0:128,0:4407,0:-396.814,-38.5318,0,-396.814,-38.5318,-396.814	1/2:49:0,28,21:0:0:28,21:958,744:-138.683,-60.9627,-52.5339,-78.0693,0,-71.7477	1/1:94:0,94,0:0:0:94,0:3257,0:-293.355,-28.2968,0,-293.355,-28.2968,-293.355	1/1:146:0,145,1:0:0:145,1:5069,36:-455.734,-43.6494,0,-452.796,-40.3521,-452.495	1/2:234:0,103,130:0:0:103,130:3622,4624:-671.807,-376.973,-345.967,-294.967,0,-255.833	1/2:21:0,8,13:0:0:8,13:288,464:-61.6846,-38.1841,-35.7759,-23.8592,0,-19.9458	1/1:214:0,214,0:0:0:214,0:7526,0:-677.401,-64.4204,0,-677.401,-64.4204,-677.401	1/1:101:0,98,3:0:0:98,3:3449,108:-310.267,-29.5009,0,-301.454,-20.3289,-300.551	1/2:90:0,47,42:0:0:47,42:1652,1500:-256.776,-122.311,-108.162,-134.479,0,-121.836	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:18:0,18,0:0:0:18,0:636,0:-57.5677,-5.41854,0,-57.5677,-5.41854,-57.5677	1/2:9:0,3,6:0:0:3,6:108,216:-26.7957,-17.9834,-17.0803,-9.17208,0,-7.3659	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:11:0,11,0:0:0:11,0:377,0:-34.2596,-3.31133,0,-34.2596,-3.31133,-34.2596	1/1:186:0,186,0:0:0:186,0:6590,0:-593.188,-55.9916,0,-593.188,-55.9916,-593.188	1/2:58:0,30,28:0:0:30,28:1068,1000:-168.932,-81.8865,-72.8556,-87.4018,0,-78.973	1/2:42:0,13,29:0:0:13,29:450,1036:-121.391,-84.824,-80.9107,-36.9162,0,-28.1863	1/1:7:0,7,0:0:0:7,0:248,0:-22.6644,-2.10721,0,-22.6644,-2.10721,-22.6644	1/2:104:0,49,55:0:0:49,55:1730,1960:-300.998,-160.119,-145.368,-141.234,0,-124.677	1/2:24:0,5,18:0:0:5,18:180,643:-67.1096,-52.4219,-50.9168,-14.6871,0,-9.26855	1/1:186:0,186,0:0:0:186,0:6494,0:-584.562,-55.9916,0,-584.562,-55.9916,-584.562	1/1:36:0,36,0:0:0:36,0:1263,0:-113.973,-10.8371,0,-113.973,-10.8371,-113.973	1/1:60:0,60,0:0:0:60,0:2115,0:-190.618,-18.0618,0,-190.618,-18.0618,-190.618	1/2:118:0,60,58:0:0:60,58:2063,2072:-336.772,-169.291,-151.229,-167.832,0,-150.372	1/2:73:0,35,38:0:0:35,38:1220,1356:-210.115,-110.901,-100.365,-99.5662,0,-88.1271	1/2:123:0,69,54:0:0:69,54:2427,1932:-355.46,-157.901,-137.13,-197.914,0,-181.659	1/1:68:0,68,0:0:0:68,0:2363,0:-212.925,-20.47,0,-212.925,-20.47,-212.925	1/1:90:0,90,0:0:0:90,0:3156,0:-284.27,-27.0927,0,-284.27,-27.0927,-284.27	1/1:53:0,53,0:0:0:53,0:1847,0:-166.509,-15.9546,0,-166.509,-15.9546,-166.509	1/2:7:0,4,3:0:0:4,3:132,108:-19.8269,-9.17208,-7.96796,-11.0019,0,-10.0988	1/2:119:0,57,61:0:0:57,61:1977,2161:-336.726,-176.033,-158.874,-160.684,0,-142.321	1/1:50:0,50,0:0:0:50,0:1764,0:-159.043,-15.0515,0,-159.043,-15.0515,-159.043	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:80:0,79,0:0:0:79,0:2753,0:-247.66,-23.7814,0,-247.66,-23.7814,-247.66	1/2:52:0,19,33:0:0:19,33:656,1169:-148.429,-95.2216,-89.5021,-53.196,0,-43.2621	1/1:4:0,4,0:0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chr08	12841	.	T	C	249200	PASS	AB=0.469642;ABP=33.8617;AC=149;AF=0.792553;AN=188;AO=8990;CIGAR=1X;DP=11069;DPB=11069;DPRA=0;EPP=152.235;EPPR=89.8524;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.9924;MQMR=59.999;NS=94;NUMALT=1;ODDS=5.25158;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=321617;QR=74403;RO=2074;RPL=4096;RPP=156.826;RPPR=91.0628;RPR=4894;RUN=1;SAF=6;SAP=19472.5;SAR=8984;SRF=3;SRP=4480.62;SRR=2071;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:18,16:18:648:16:568:-41.2163,0,-48.4169	1/1:166:0,166:0:0:166:5950:-535.606,-49.971,0	0/1:84:48,36:48:1724:36:1292:-91.2972,0,-130.159	0/1:187:114,73:114:4096:73:2624:-180.114,0,-312.531	0/1:53:27,26:27:934:26:920:-67.1611,0,-68.4141	0/1:69:33,36:33:1188:36:1296:-96.1729,0,-86.4575	1/1:103:2,101:2:72:101:3628:-319.032,-24.1694,0	1/1:156:0,155:0:0:155:5541:-498.454,-46.6597,0	1/1:97:1,96:1:36:96:3433:-305.583,-25.6016,0	1/1:94:0,94:0:0:94:3355:-302.167,-28.2968,0	0/1:79:15,64:15:540:64:2286:-182.219,0,-25.1552	1/1:52:0,52:0:0:52:1861:-167.768,-15.6536,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:72:0,72:0:0:72:2583:-232.718,-21.6742,0	1/1:222:0,222:0:0:222:7973:-717.587,-66.8287,0	1/1:165:1,164:1:36:164:5868:-524.633,-46.0717,0	0/1:136:95,41:95:3412:41:1446:-89.4918,0,-266.352	1/1:93:0,93:0:0:93:3320:-299.018,-27.9958,0	0/1:157:63,94:63:2256:94:3378:-256.973,0,-156.041	1/1:57:0,57:0:0:57:2037:-183.601,-17.1587,0	1/1:333:4,329:4:144:329:11747:-1043.78,-86.9294,0	0/1:198:99,99:99:3556:99:3552:-260.284,0,-260.643	0/1:42:27,15:27:972:15:536:-35.9316,0,-75.1546	1/1:175:0,175:0:0:175:6276:-564.932,-52.6803,0	1/1:211:8,203:8:284:203:7267:-628.177,-37.614,0	0/1:134:82,52:82:2948:52:1852:-126.622,0,-225.215	1/1:498:7,491:7:252:491:17559:-1556.9,-126.884,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:305:5,300:5:180:300:10760:-951.75,-75.2621,0	1/1:473:0,472:0:0:472:16820:-1513.09,-142.086,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:166:0,166:0:0:166:5957:-536.233,-49.971,0	0/1:259:114,145:114:4085:145:5129:-383.782,0,-289.867	0/1:65:34,31:34:1224:31:1116:-81.1847,0,-90.9001	1/1:139:0,139:0:0:139:4980:-448.348,-41.8432,0	0/1:119:69,50:69:2472:50:1796:-126.1,0,-186.911	0/1:90:23,67:23:824:67:2412:-190.243,0,-47.3906	1/1:136:0,136:0:0:136:4846:-436.293,-40.9401,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:67:0,67:0:0:67:2403:-216.526,-20.169,0	0/1:74:39,35:39:1389:35:1260:-91.4293,0,-103.031	0/1:155:76,79:76:2728:79:2832:-208.459,0,-199.103	0/1:266:125,141:125:4473:141:5047:-374.299,0,-322.664	1/1:187:0,187:0:0:187:6658:-599.298,-56.2926,0	1/1:146:0,146:0:0:146:5191:-467.33,-43.9504,0	1/1:149:0,149:0:0:149:5351:-481.721,-44.8535,0	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/1:158:79,79:79:2836:79:2832:-207.556,0,-207.915	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:24:18,6:18:648:6:216:-12.5658,0,-51.4272	1/1:132:0,132:0:0:132:4736:-426.397,-39.736,0	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	1/1:314:0,314:0:0:314:11192:-1007.17,-94.5234,0	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:60:22,38:22:792:38:1360:-104.639,0,-53.5439	0/1:86:55,31:55:1976:31:1112:-74.5028,0,-152.226	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	0/1:194:136,58:136:4888:58:2076:-128.711,0,-381.67	1/1:221:0,220:0:0:220:7875:-708.415,-66.2266,0	1/1:75:1,74:1:36:74:2656:-235.687,-18.979,0	1/1:88:0,88:0:0:88:3128:-281.745,-26.4906,0	1/1:192:1,191:1:36:191:6845:-612.519,-54.1995,0	0/1:88:57,31:57:2033:31:1097:-72.5474,0,-156.75	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:65:40,25:40:1440:25:900:-61.7541,0,-110.331	1/1:187:0,187:0:0:187:6675:-600.826,-56.2926,0	1/1:101:0,101:0:0:101:3611:-325.166,-30.404,0	0/1:95:56,38:56:2008:38:1364:-94.4041,0,-152.337	1/1:120:0,120:0:0:120:4296:-386.814,-36.1236,0	1/1:143:1,142:1:36:142:5087:-454.373,-39.449,0	1/1:102:0,102:0:0:102:3629:-326.815,-30.7051,0	1/1:110:0,110:0:0:110:3956:-356.23,-33.1133,0	0/1:24:16,8:16:576:8:288:-19.0427,0,-44.9503	0/1:180:103,76:103:3700:76:2718:-190.618,0,-278.957	0/1:119:68,51:68:2440:51:1828:-128.978,0,-184.032	1/1:324:0,324:0:0:324:11585:-1042.52,-97.5337,0	0/1:85:51,34:51:1836:34:1224:-84.8795,0,-139.933	1/1:40:1,39:1:36:39:1404:-123.061,-8.44293,0	0/1:89:56,33:56:2012:33:1188:-80.4369,0,-154.561	1/1:134:0,134:0:0:134:4785:-430.806,-40.338,0	1/1:38:0,38:0:0:38:1363:-122.971,-11.4391,0	0/1:69:38,31:38:1368:31:1116:-79.9806,0,-102.65	1/1:69:0,69:0:0:69:2460:-221.652,-20.7711,0	0/1:90:10,80:10:360:80:2880:-232.343,0,-5.6516	0/1:70:46,24:46:1648:24:864:-57.0105,0,-127.536	0/1:72:45,27:45:1605:27:963:-65.3118,0,-123.064	1/1:53:0,53:0:0:53:1889:-170.286,-15.9546,0	1/1:102:0,102:0:0:102:3640:-327.803,-30.7051,0
chr08	95172	.	TCACT	CCACT,CCACC	85864.6	PASS	AB=0.391414,0.606566;ABP=205.791,198.316;AC=137,43;AF=0.761111,0.238889;AN=180;AO=2851,1215;CIGAR=1X4M,1X3M1X;DP=4077;DPB=4077.4;DPRA=11.5597,1.11121;EPP=6193.88,2641.35;EPPR=0;GTI=4;LEN=1,5;MEANALT=1.60227,2.1087;MQM=59.9463,59.3481;MQMR=0;NS=90;NUMALT=2;ODDS=0.313174;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,36;PQR=0;PRO=0;QA=102077,41621;QR=0;RO=0;RPL=0,0;RPP=6193.88,2641.35;RPPR=0;RPR=2851,1215;RUN=1,1;SAF=2851,1215;SAP=6193.88,2641.35;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,15,12:0:0:15,12:540,412:-77.8563,-33.7857,-29.2703,-44.4211,0,-40.8087	1/1:37:0,37,0:0:0:37,0:1332,0:-120.147,-11.1381,0,-120.147,-11.1381,-120.147	1/2:96:0,44,52:0:0:44,52:1568,1808:-274.77,-146.953,-133.708,-127.979,0,-112.325	1/2:96:0,22,74:0:0:22,74:788,2516:-268.647,-204.379,-197.756,-64.6221,0,-42.3459	1/2:23:0,9,14:0:0:9,14:324,483:-66.0265,-39.5839,-36.8747,-26.7966,0,-22.5822	1/2:17:0,7,10:0:0:7,10:252,347:-49.1023,-28.535,-26.4278,-20.9217,0,-17.9114	1/1:52:0,52,0:0:0:52,0:1860,0:-167.679,-15.6536,0,-167.679,-15.6536,-167.679	1/1:45:0,45,0:0:0:45,0:1620,0:-146.09,-13.5464,0,-146.09,-13.5464,-146.09	1/1:45:0,44,0:0:0:44,0:1576,0:-141.772,-13.2453,0,-141.772,-13.2453,-141.772	1/1:44:0,44,0:0:0:44,0:1568,0:-141.412,-13.2453,0,-141.412,-13.2453,-141.412	1/2:32:0,16,16:0:0:16,16:568,547:-91.0238,-44.7367,-39.9202,-46.6354,0,-41.8189	1/1:53:0,53,0:0:0:53,0:1892,0:-170.558,-15.9546,0,-170.558,-15.9546,-170.558	1/1:45:0,45,0:0:0:45,0:1616,0:-145.73,-13.5464,0,-145.73,-13.5464,-145.73	1/2:40:0,22,18:0:0:22,18:792,614:-114.794,-50.16,-43.5373,-64.983,0,-59.5645	1/1:29:0,29,0:0:0:29,0:1036,0:-93.5539,-8.72987,0,-93.5539,-8.72987,-93.5539	1/1:32:0,32,0:0:0:32,0:1144,0:-103.256,-9.63296,0,-103.256,-9.63296,-103.256	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/1:42:0,42,0:0:0:42,0:1512,0:-136.371,-12.6433,0,-136.371,-12.6433,-136.371	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:78:0,78,0:0:0:78,0:2784,0:-250.801,-23.4803,0,-250.801,-23.4803,-250.801	1/1:59:0,59,0:0:0:59,0:2112,0:-190.349,-17.7608,0,-190.349,-17.7608,-190.349	1/2:81:0,17,64:0:0:17,64:608,2197:-228.278,-178.698,-173.58,-49.9345,0,-30.6686	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/2:53:0,27,25:0:0:27,25:968,866:-149.338,-70.3804,-62.2526,-78.9594,0,-71.4336	1/1:36:0,35,0:0:0:35,0:1252,0:-112.625,-10.5361,0,-112.625,-10.5361,-112.625	1/1:67:0,67,0:0:0:67,0:2389,0:-215.262,-20.169,0,-215.262,-20.169,-215.262	1/2:87:0,27,60:0:0:27,60:972,2077:-248.42,-169.106,-160.978,-79.6701,0,-61.6083	1/2:23:0,8,15:0:0:8,15:288,517:-65.8424,-42.3377,-39.9295,-23.8592,0,-19.3437	1/1:64:0,63,0:0:0:63,0:2260,0:-203.311,-18.9649,0,-203.311,-18.9649,-203.311	1/1:53:0,51,2:0:0:51,2:1824,66:-164.115,-15.3525,0,-158.867,-9.77828,-158.265	1/2:59:0,25,34:0:0:25,34:900,1134:-165.561,-92.1143,-84.5886,-73.7949,0,-63.5598	1/2:9:0,3,6:0:0:3,6:104,204:-25.3389,-16.8835,-15.9804,-8.79971,0,-6.99353	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	2/2:4:0,0,3:0:0:0,3:0,105:-9.48366,-9.48366,-9.48366,-0.90309,-0.90309,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:126:0,126,0:0:0:126,0:4528,0:-407.685,-37.9298,0,-407.685,-37.9298,-407.685	1/2:119:0,54,65:0:0:54,65:1932,2234:-339.292,-181.742,-165.486,-157.901,0,-138.334	1/2:30:0,13,17:0:0:13,17:468,569:-84.5089,-46.3113,-42.3979,-38.5463,0,-33.4287	.:.:.:.:.:.:.:.	1/2:64:0,17,47:0:0:17,47:604,1592:-178.626,-129.404,-124.286,-49.5731,0,-35.4247	1/2:26:0,16,10:0:0:16,10:564,339:-73.7579,-27.8281,-23.0116,-46.2738,0,-43.2635	1/1:78:0,78,0:0:0:78,0:2789,0:-250.979,-23.4803,0,-250.979,-23.4803,-250.979	1/1:37:0,37,0:0:0:37,0:1311,0:-118.291,-11.1381,0,-118.291,-11.1381,-118.291	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/2:53:0,20,33:0:0:20,33:716,1102:-147.919,-89.5204,-83.4998,-58.7471,0,-48.8131	1/2:39:0,15,24:0:0:15,24:528,808:-108.786,-65.805,-61.2896,-43.3268,0,-36.1021	1/2:78:0,26,51:0:0:26,51:932,1758:-218.777,-142.759,-134.932,-76.0123,0,-60.6598	1/1:48:0,48,0:0:0:48,0:1728,0:-155.805,-14.4494,0,-155.805,-14.4494,-155.805	1/1:39:0,37,2:0:0:37,2:1324,72:-119.102,-11.1381,0,-113.227,-4.90345,-112.625	1/1:42:0,42,0:0:0:42,0:1492,0:-134.566,-12.6433,0,-134.566,-12.6433,-134.566	2/2:4:0,0,4:0:0:0,4:0,141:-13.0371,-13.0371,-13.0371,-1.20412,-1.20412,0	1/2:74:0,26,48:0:0:26,48:932,1632:-208.69,-132.67,-124.843,-76.3721,0,-61.9226	1/1:22:0,22,0:0:0:22,0:788,0:-71.2357,-6.62266,0,-71.2357,-6.62266,-71.2357	1/2:10:0,2,8:0:0:2,8:72,277:-28.7356,-22.858,-22.256,-6.23466,0,-3.82642	1/1:44:0,44,0:0:0:44,0:1580,0:-142.492,-13.2453,0,-142.492,-13.2453,-142.492	1/2:22:0,14,8:0:0:14,8:504,273:-63.6272,-22.4914,-18.277,-41.4837,0,-39.0754	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:12:0,5,7:0:0:5,7:180,245:-34.9743,-20.2831,-18.778,-15.0469,0,-12.9397	1/2:49:0,12,37:0:0:12,37:432,1260:-137.813,-102.559,-98.9466,-35.6088,0,-24.4707	1/2:90:0,51,39:0:0:51,39:1832,1384:-262.322,-112.87,-97.5172,-149.808,0,-138.068	.:.:.:.:.:.:.:.	1/2:150:0,61,87:0:0:61,87:2157,3020:-421.128,-245.445,-227.082,-175.731,0,-149.542	1/1:70:0,70,0:0:0:70,0:2504,0:-225.612,-21.0721,0,-225.612,-21.0721,-225.612	1/1:36:0,35,1:0:0:35,1:1260,35:-113.355,-10.5361,0,-110.508,-7.33845,-110.207	1/1:27:0,24,1:0:0:24,1:864,36:-77.7466,-7.22472,0,-74.809,-4.2739,-74.508	1/1:53:0,53,0:0:0:53,0:1904,0:-171.638,-15.9546,0,-171.638,-15.9546,-171.638	1/2:52:0,7,45:0:0:7,45:252,1528:-144.824,-124.259,-122.152,-20.9217,0,-7.3754	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:35:0,17,18:0:0:17,18:612,615:-100.177,-50.2321,-45.1145,-50.2959,0,-44.8774	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:53:0,53,0:0:0:53,0:1900,0:-171.278,-15.9546,0,-171.278,-15.9546,-171.278	1/2:56:0,22,34:0:0:22,34:792,1131:-156.47,-91.8363,-85.2136,-64.983,0,-54.748	1/1:63:0,63,0:0:0:63,0:2264,0:-204.021,-18.9649,0,-204.021,-18.9649,-204.021	1/1:55:0,55,0:0:0:55,0:1968,0:-177.395,-16.5567,0,-177.395,-16.5567,-177.395	1/1:47:0,47,0:0:0:47,0:1684,0:-151.847,-14.1484,0,-151.847,-14.1484,-151.847	1/1:48:0,46,1:0:0:46,1:1656,30:-148.997,-13.8474,0,-146.6,-11.4787,-146.299	1/2:14:0,3,11:0:0:3,11:108,371:-39.221,-30.4039,-29.5008,-9.17208,0,-5.86075	1/2:60:0,16,44:0:0:16,44:572,1498:-168.5,-121.856,-117.04,-46.9969,0,-33.7516	1/2:59:0,21,38:0:0:21,38:752,1286:-165.909,-104.575,-98.2537,-61.6846,0,-50.2455	1/1:62:0,62,0:0:0:62,0:2220,0:-200.064,-18.6639,0,-200.064,-18.6639,-200.064	1/2:35:0,23,12:0:0:23,12:824,413:-101.098,-33.8872,-26.9635,-67.5596,0,-63.9473	1/1:31:0,31,0:0:0:31,0:1104,0:-99.6706,-9.33193,0,-99.6706,-9.33193,-99.6706	1/2:30:0,18,12:0:0:18,12:646,427:-87.5705,-35.1454,-29.7268,-52.7813,0,-49.1689	1/1:64:0,64,0:0:0:64,0:2292,0:-206.539,-19.2659,0,-206.539,-19.2659,-206.539	1/1:15:0,15,0:0:0:15,0:540,0:-48.9332,-4.51545,0,-48.9332,-4.51545,-48.9332	1/2:43:0,18,25:0:0:18,25:644,874:-123.963,-71.4449,-66.0263,-52.8721,0,-45.3463	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/2:27:0,13,14:0:0:13,14:468,483:-77.7755,-39.5834,-35.67,-38.5447,0,-34.3303	1/2:69:0,33,36:0:0:33,36:1184,1211:-194.989,-98.4029,-88.4689,-96.9343,0,-86.0972	1/2:41:0,10,31:0:0:10,31:352,1084:-117.194,-88.5374,-85.5271,-29.0079,0,-19.676	1/1:33:0,33,0:0:0:33,0:1169,0:-105.515,-9.93399,0,-105.515,-9.93399,-105.515	1/1:42:0,42,0:0:0:42,0:1488,0:-134.215,-12.6433,0,-134.215,-12.6433,-134.215
chr08	95177	.	CCC	CCA	60641.1	PASS	AB=0.392662;ABP=204.858;AC=137;AF=0.761111;AN=180;AO=2912;CIGAR=2M1X;DP=4159;DPB=4159;DPRA=11.7926;EPP=6326.34;EPPR=2684.78;GTI=2;LEN=1;MEANALT=1.11364;MQM=59.944;MQMR=59.3798;NS=90;NUMALT=1;ODDS=1.04205;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104218;QR=43490;RO=1235;RPL=0;RPP=6326.34;RPPR=2684.78;RPR=2912;RUN=1;SAF=2912;SAP=6326.34;SAR=0;SRF=1235;SRP=2684.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:455:14:500:-37.2084,0,-33.143	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:105:56,49:56:1952:49:1752:-126.356,0,-144.056	0/1:96:73,23:73:2570:23:811:-44.3991,0,-202.608	0/1:24:14,10:14:498:10:352:-24.7709,0,-37.9308	0/1:19:11,8:11:393:8:284:-20.1838,0,-29.9698	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:33:15,18:15:528:18:640:-47.9953,0,-37.917	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:48:0,48:0:0:48:1720:-155.085,-14.4494,0	0/1:40:18,22:18:617:22:777:-58.2092,0,-43.8082	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:33:0,33:0:0:33:1180:-106.494,-9.93399,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:43:0,43:0:0:43:1529:-137.898,-12.9443,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:77:0,76:0:0:76:2728:-245.511,-22.8783,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:83:65,18:65:2298:18:648:-33.6664,0,-182.059	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:53:25,26:25:885:26:927:-68.0361,0,-64.2546	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:71:0,70:0:0:70:2466:-221.829,-21.0721,0	0/1:88:61,27:61:2141:27:968:-60.9467,0,-166.43	0/1:24:15,9:15:535:9:324:-22.2811,0,-41.2544	1/1:67:0,67:0:0:67:2399:-216.167,-20.169,0	1/1:53:2,51:2:72:51:1824:-157.217,-9.35739,0	0/1:60:35,25:35:1227:25:888:-62.1768,0,-92.654	0/1:9:6,3:6:214:3:108:-7.3659,0,-16.8877	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:130:0,130:0:0:130:4676:-420.999,-39.1339,0	0/1:121:66,55:66:2344:55:1976:-141.69,0,-174.774	0/1:30:17,13:17:585:13:468:-33.4287,0,-43.8437	.:.:.:.:.:.:.:.	0/1:67:50,17:50:1745:17:608:-34.883,0,-137.133	0/1:26:11,14:11:385:14:504:-37.8964,0,-27.1821	1/1:77:0,75:0:0:75:2676:-240.794,-22.5773,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	0/1:54:33,21:33:1173:21:748:-51.3897,0,-89.5935	0/1:39:24,15:24:856:15:536:-36.8121,0,-65.6144	0/1:79:51,27:51:1793:27:956:-62.5158,0,-137.769	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:40:2,38:2:72:38:1368:-116.584,-5.20448,0	1/1:42:0,42:0:0:42:1508:-136.006,-12.6433,0	0/0:4:4,0:4:133:0:0:0,-1.20412,-12.2981	0/1:76:50,26:50:1779:26:917:-59.9663,0,-137.461	1/1:23:0,23:0:0:23:811:-73.288,-6.92369,0	0/1:10:8,2:8:278:2:72:-3.82642,0,-22.346	1/1:46:1,45:1:34:45:1616:-142.331,-10.4485,0	0/1:22:8,14:8:284:14:500:-38.7135,0,-19.2747	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:12:7,5:7:244:5:180:-12.9397,0,-18.6864	0/1:49:37,12:37:1317:12:432:-24.4707,0,-104.075	0/1:92:39,52:39:1376:52:1868:-140.646,0,-96.3374	.:.:.:.:.:.:.:.	0/1:150:88,62:88:3093:62:2208:-153.83,0,-233.252	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:36:1,34:1:36:34:1188:-103.623,-7.2976,0	1/1:29:0,29:0:0:29:1032:-93.1881,-8.72987,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	0/1:54:45,9:45:1575:9:324:-13.2502,0,-125.772	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:36:18,18:18:640:18:648:-47.8148,0,-47.0713	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	0/1:59:36,23:36:1269:23:828:-57.0833,0,-96.7159	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:48:1,47:1:36:47:1676:-147.529,-10.8512,0	0/1:14:11,3:11:387:3:108:-5.86075,0,-30.952	0/1:59:44,15:44:1569:15:540:-31.1758,0,-123.724	0/1:60:39,21:39:1368:21:748:-49.5835,0,-105.327	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:36:12,24:12:428:24:864:-67.2455,0,-28.0219	1/1:33:0,33:0:0:33:1183:-106.778,-9.93399,0	0/1:30:12,18:12:430:18:640:-48.7068,0,-29.9985	1/1:68:0,67:0:0:67:2408:-216.705,-20.169,0	1/1:16:0,15:0:0:15:540:-48.7138,-4.51545,0	0/1:44:26,18:26:903:18:644:-45.0419,0,-68.3369	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:27:14,13:14:500:13:464:-33.9681,0,-37.2086	0/1:69:36,33:36:1245:33:1184:-86.0972,0,-91.5065	0/1:41:31,10:31:1084:10:360:-20.4021,0,-85.5255	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0
chr08	95184	.	C	T	21346.9	PASS	AB=0.600399;ABP=178.729;AC=43;AF=0.238889;AN=180;AO=1221;CIGAR=1X;DP=4149;DPB=4149;DPRA=1.12564;EPP=2654.38;EPPR=6350.22;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.3735;MQMR=59.9436;NS=90;NUMALT=1;ODDS=1.19547;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43697;QR=104646;RO=2923;RPL=0;RPP=2654.38;RPPR=6350.22;RPR=1221;RUN=1;SAF=1221;SAP=2654.38;SAR=0;SRF=2923;SRP=6350.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:15,13:15:540:13:449:-32.2975,0,-40.5077	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:104:49,55:49:1744:55:1972:-146.154,0,-125.937	0/1:96:23,73:23:828:73:2593:-204.648,0,-45.9452	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.497	0/1:18:7,11:7:252:11:392:-30.1801,0,-17.6104	0/0:54:54,0:54:1912:0:0:0,-16.2556,-172.354	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:32:18,14:18:644:14:504:-36.0651,0,-48.6576	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:40:22,18:22:788:18:648:-46.6,0,-59.2036	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.256	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.371	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.832	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:83:17,65:17:608:65:2340:-185.895,0,-30.1494	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:53:28,25:28:1004:25:900:-65.3664,0,-74.7213	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.286	0/1:86:28,58:28:1008:58:2080:-161.539,0,-65.1478	0/1:24:9,15:9:324:15:536:-41.3394,0,-22.2811	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.132	0/0:55:53,2:53:1879:2:68:0,-10.2116,-162.672	0/1:61:24,36:24:864:36:1280:-97.0533,0,-59.6605	0/1:9:3,6:3:108:6:216:-17.0704,0,-7.3659	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:130:129,0:129:4640:0:0:0,-38.8329,-417.549	0/1:121:56,65:56:2008:65:2336:-174.053,0,-144.569	0/1:29:13,16:13:460:16:576:-43.3478,0,-33.0055	.:.:.:.:.:.:.:.	0/1:67:17,50:17:612:50:1788:-141.006,0,-35.2444	0/1:27:16,11:16:567:11:390:-27.3106,0,-43.2329	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.596	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:52:21,31:21:748:31:1112:-84.7058,0,-51.9917	0/1:39:15,24:15:540:24:864:-66.3317,0,-37.1738	0/1:77:28,49:28:1008:49:1749:-134.467,0,-67.857	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:41:38,3:38:1364:3:108:0,-2.26706,-112.986	0/0:42:42,0:42:1484:0:0:0,-12.6433,-133.848	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:76:26,50:26:936:50:1796:-138.991,0,-61.6812	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8217	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/0:46:45,1:45:1616:1:36:0,-10.2491,-142.132	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:5,7:5:176:7:237:-18.0467,0,-12.5727	0/1:48:12,36:12:432:36:1288:-101.77,0,-24.7718	0/1:91:53,38:53:1887:38:1364:-95.6457,0,-142.714	.:.:.:.:.:.:.:.	0/1:152:64,88:64:2288:88:3141:-237.139,0,-160.425	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.21	0/0:37:36,1:36:1292:1:36:0,-7.53983,-112.985	0/0:30:29,0:29:1032:0:0:0,-8.72987,-92.8231	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:53:9,44:9:316:44:1580:-126.526,0,-12.8243	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:36:18,18:18:648:18:648:-47.7934,0,-47.8148	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:54:53,0:53:1900:0:0:0,-15.9546,-170.918	0/1:58:23,35:23:828:35:1254:-95.672,0,-57.3844	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:49:48,1:48:1728:1:36:0,-11.1522,-152.207	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/1:60:16,44:16:576:44:1576:-124.048,0,-34.1132	0/1:61:22,39:22:777:39:1400:-107.904,0,-51.8875	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/1:36:24,12:24:860:12:432:-28.3841,0,-66.8848	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/1:29:17,12:17:608:12:428:-30.1182,0,-45.9501	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.489	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:44:18,26:18:648:26:936:-71.3079,0,-45.4032	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0918	0/1:68:33,35:33:1188:35:1247:-91.9429,0,-86.7586	0/1:41:10,31:10:345:31:1108:-87.6888,0,-19.0386	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:41:41,0:41:1458:0:0:0,-12.3422,-131.515
chr08	95327	.	G	A	64339.2	PASS	AB=0.354763;ABP=393.448;AC=145;AF=0.77957;AN=186;AO=3118;CIGAR=1X;DP=4508;DPB=4508;DPRA=0;EPP=6764.98;EPPR=3017.01;GTI=5;LEN=1;MEANALT=1.02151;MQM=59.9557;MQMR=60;NS=93;NUMALT=1;ODDS=0.942677;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110904;QR=49222;RO=1388;RPL=0;RPP=6773.66;RPPR=3017.01;RPR=3118;RUN=1;SAF=1;SAP=6764.98;SAR=3117;SRF=0;SRP=3017.01;SRR=1388;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:16,27:16:576:27:964:-74.1325,0,-39.2307	1/1:33:0,33:0:0:33:1162:-104.885,-9.93399,0	0/1:95:65,30:65:2311:30:1072:-68.1946,0,-179.653	0/1:94:57,37:57:2011:37:1315:-90.3542,0,-152.963	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/1:7:4,3:4:136:3:108:-7.96796,0,-10.4683	1/1:26:0,25:0:0:25:896:-80.6389,-7.52575,0	1/1:67:0,67:0:0:67:2387:-215.087,-20.169,0	1/1:25:0,25:0:0:25:888:-80.2319,-7.52575,0	1/1:50:0,50:0:0:50:1775:-160.032,-15.0515,0	0/1:57:37,20:37:1315:20:712:-47.2479,0,-101.492	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	0/1:106:69,37:69:2468:37:1306:-85.9083,0,-190.465	1/1:32:0,32:0:0:32:1144:-103.268,-9.63296,0	1/1:32:0,32:0:0:32:1130:-102.007,-9.63296,0	1/1:22:0,22:0:0:22:770:-69.6189,-6.62266,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:70:0,70:0:0:70:2484:-223.809,-21.0721,0	1/1:62:1,61:1:36:61:2159:-190.979,-15.0656,0	0/1:65:55,10:55:1909:10:360:-13.1774,0,-152.514	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:83:0,83:0:0:83:2947:-265.462,-24.9855,0	0/1:121:74,47:74:2620:47:1684:-115.422,0,-199.625	0/1:10:4,6:4:140:6:212:-16.4145,0,-9.93428	1/1:102:0,102:0:0:102:3638:-327.625,-30.7051,0	1/1:72:5,67:5:180:67:2390:-198.804,-5.1221,0	0/1:32:17,15:17:612:15:532:-38.5801,0,-45.7805	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:102:0,102:0:0:102:3618:-325.826,-30.7051,0	0/1:87:66,21:66:2330:21:752:-41.8166,0,-183.77	0/1:45:29,16:29:1040:16:572:-38.2671,0,-80.368	.:.:.:.:.:.:.:.	0/1:55:33,22:33:1160:22:788:-54.6881,0,-88.1473	0/1:22:15,7:15:536:7:252:-16.4063,0,-41.9522	1/1:85:0,85:0:0:85:2985:-268.879,-25.5876,0	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	1/1:25:0,25:0:0:25:883:-79.7851,-7.52575,0	0/1:66:47,19:47:1680:19:676:-41.3,0,-131.619	0/1:52:32,20:32:1136:20:708:-48.392,0,-86.8953	0/1:63:36,27:36:1288:27:944:-66.3065,0,-97.2587	1/1:38:0,38:0:0:38:1339:-120.809,-11.4391,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:90:0,90:0:0:90:3212:-289.295,-27.0927,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:83:52,31:52:1825:31:1097:-74.0525,0,-139.544	1/1:41:0,41:0:0:41:1468:-132.388,-12.3422,0	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	1/1:70:0,70:0:0:70:2499:-225.162,-21.0721,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:19:12,7:12:419:7:252:-17.3094,0,-32.3231	0/1:52:33,19:33:1165:19:676:-45.5144,0,-89.5014	0/1:93:54,39:54:1923:39:1391:-97.4925,0,-145.35	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:111:77,33:77:2719:33:1171:-72.1879,0,-211.479	1/1:83:0,83:0:0:83:2939:-264.744,-24.9855,0	1/1:40:1,39:1:36:39:1373:-120.246,-8.44293,0	1/1:35:0,35:0:0:35:1235:-111.453,-10.5361,0	1/1:75:2,73:2:72:73:2620:-229.211,-15.7405,0	0/1:130:104,26:104:3668:26:932:-45.065,0,-291.189	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:42:31,11:31:1107:11:392:-22.9768,0,-87.2969	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	1/1:64:0,64:0:0:64:2255:-203.214,-19.2659,0	0/1:70:49,21:49:1730:21:748:-46.5732,0,-134.911	1/1:112:0,112:0:0:112:3970:-357.491,-33.7154,0	1/1:68:0,68:0:0:68:2412:-217.332,-20.47,0	1/1:61:0,61:0:0:61:2181:-196.551,-18.3628,0	1/1:73:3,70:3:104:70:2508:-216.269,-12.2724,0	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/1:79:53,26:53:1892:26:901:-57.6208,0,-146.777	0/1:56:23,33:23:816:33:1179:-89.5595,0,-56.904	1/1:50:0,50:0:0:50:1770:-159.474,-15.0515,0	0/1:28:13,15:13:468:15:532:-39.7837,0,-34.0308	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	1/1:63:2,61:2:68:61:2180:-190.009,-12.5072,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:32:19,13:19:684:13:464:-32.4645,0,-52.2574	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	0/1:31:21,10:21:739:10:360:-23.4124,0,-57.5004	0/1:107:70,37:70:2476:37:1331:-87.8822,0,-190.882	0/1:64:45,19:45:1603:19:674:-41.7213,0,-125.293	1/1:58:0,58:0:0:58:2059:-185.581,-17.4597,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0
chr08	95359	.	TGG	CGC,CGG	99758.9	PASS	AB=0.363173,0.634045;ABP=353.608,339.492;AC=145,41;AF=0.77957,0.22043;AN=186;AO=3206,1382;CIGAR=1X1M1X,1X2M;DP=4607;DPB=4607;DPRA=0,1.274;EPP=6537.23,2883.61;EPPR=0;GTI=5;LEN=3,1;MEANALT=1.72043,2.1875;MQM=59.9623,60;MQMR=0;NS=93;NUMALT=2;ODDS=1.78232;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=112855,49181;QR=0;RO=0;RPL=3156,1368;RPP=6537.23,2883.61;RPPR=0;RPR=50,14;RUN=1,1;SAF=0,0;SAP=6964.75,3003.99;SAR=3206,1382;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,29,17:0:0:29,17:1012,604:-131.879,-49.5731,-40.8432,-82.6589,0,-77.5414	1/1:34:0,34,0:0:0:34,0:1196,0:-107.945,-10.235,0,-107.945,-10.235,-107.945	1/2:97:0,33,64:0:0:33,64:1156,2283:-280.524,-186.465,-176.531,-94.411,0,-75.145	1/2:95:0,38,57:0:0:38,57:1339,2035:-275.278,-166.263,-154.824,-109.369,0,-92.2105	1/2:21:0,11,9:0:0:11,9:384,311:-56.4912,-25.2561,-21.9447,-31.2241,0,-28.5148	1/2:7:0,3,4:0:0:3,4:91,144:-19.3702,-12.1095,-11.2064,-7.58818,0,-6.38406	1/1:27:0,26,0:0:0:26,0:914,0:-82.2916,-7.82678,0,-82.2916,-7.82678,-82.2916	1/1:73:0,72,0:0:0:72,0:2548,0:-229.296,-21.6742,0,-229.296,-21.6742,-229.296	1/1:25:0,25,0:0:0:25,0:872,0:-78.7934,-7.52575,0,-78.7934,-7.52575,-78.7934	1/1:51:0,50,0:0:0:50,0:1758,0:-158.143,-15.0515,0,-158.143,-15.0515,-158.143	1/2:57:0,21,36:0:0:21,36:746,1292:-166.533,-105.747,-99.4251,-61.1427,0,-50.3056	1/1:46:0,46,0:0:0:46,0:1619,0:-145.994,-13.8474,0,-145.994,-13.8474,-145.994	1/1:39:0,39,0:0:0:39,0:1369,0:-123.506,-11.7402,0,-123.506,-11.7402,-123.506	1/2:108:0,39,69:0:0:39,69:1376,2476:-314.36,-202.322,-190.582,-112.393,0,-91.6215	1/1:31:0,31,0:0:0:31,0:1108,0:-100.029,-9.33193,0,-100.029,-9.33193,-100.029	1/1:33:0,33,0:0:0:33,0:1152,0:-103.984,-9.93399,0,-103.984,-9.93399,-103.984	1/1:22:0,22,0:0:0:22,0:753,0:-68.083,-6.62266,0,-68.083,-6.62266,-68.083	1/1:21:0,19,0:0:0:19,0:679,0:-61.0795,-5.71957,0,-61.0795,-5.71957,-61.0795	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:74:0,73,0:0:0:73,0:2595,0:-233.438,-21.9752,0,-233.438,-21.9752,-233.438	1/1:66:0,64,2:0:0:64,2:2218,72:-199.521,-19.2659,0,-193.646,-13.0313,-193.044	1/2:63:0,10,52:0:0:10,52:356,1859:-180.699,-151.683,-148.673,-29.1115,0,-13.458	1/1:45:0,45,0:0:0:45,0:1587,0:-143.119,-13.5464,0,-143.119,-13.5464,-143.119	1/2:24:0,10,14:0:0:10,14:352,491:-68.9631,-40.3067,-37.2964,-29.0078,0,-24.7933	1/1:21:0,21,0:0:0:21,0:744,0:-67.2835,-6.32163,0,-67.2835,-6.32163,-67.2835	1/1:87:0,87,0:0:0:87,0:3027,0:-272.658,-26.1896,0,-272.658,-26.1896,-272.658	1/2:120:0,48,72:0:0:48,72:1703,2554:-347.187,-208.436,-193.987,-139.106,0,-117.432	1/2:11:0,7,4:0:0:7,4:239,144:-31.4921,-12.1095,-10.0023,-19.7357,0,-18.5316	1/1:103:0,102,1:0:0:102,1:3569,36:-321.062,-30.7051,0,-318.124,-27.4078,-317.823	1/1:73:0,66,5:0:0:66,5:2344,180:-210.871,-19.868,0,-196.183,-5.1488,-194.678	1/2:33:0,16,16:0:0:16,16:559,572:-92.1046,-46.6373,-41.8208,-45.4614,0,-40.6449	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:5:0,5,0:0:0:5,0:178,0:-16.3686,-1.50515,0,-16.3686,-1.50515,-16.3686	1/1:1:0,1,0:0:0:1,0:34,0:-3.39891,-0.30103,0,-3.39891,-0.30103,-3.39891	1/1:105:0,104,0:0:0:104,0:3621,0:-325.736,-31.3071,0,-325.736,-31.3071,-325.736	1/2:86:0,21,65:0:0:21,65:723,2323:-248.48,-189.763,-183.441,-59.0649,0,-39.4979	1/2:44:0,16,28:0:0:16,28:567,1000:-128.077,-81.8865,-77.0701,-46.5454,0,-38.1165	.:.:.:.:.:.:.:.	1/2:56:0,24,32:0:0:24,32:852,1139:-162.605,-93.1854,-85.9607,-69.7753,0,-60.1423	1/2:23:0,8,15:0:0:8,15:288,536:-67.5596,-44.0594,-41.6511,-23.8592,0,-19.3437	1/1:85:0,84,0:0:0:84,0:2956,0:-265.914,-25.2865,0,-265.914,-25.2865,-265.914	1/1:32:0,32,0:0:0:32,0:1145,0:-103.36,-9.63296,0,-103.36,-9.63296,-103.36	1/1:26:0,26,0:0:0:26,0:922,0:-83.2951,-7.82678,0,-83.2951,-7.82678,-83.2951	1/2:68:0,22,46:0:0:22,46:763,1656:-197.494,-135.481,-128.858,-62.364,0,-48.5166	1/2:55:0,22,32:0:0:22,32:760,1139:-154.57,-92.8257,-86.2031,-61.7345,0,-52.1015	1/2:65:0,27,38:0:0:27,38:955,1356:-188.683,-110.901,-102.774,-78.1365,0,-66.6973	1/1:39:0,39,0:0:0:39,0:1379,0:-124.409,-11.7402,0,-124.409,-11.7402,-124.409	1/1:60:0,60,0:0:0:60,0:2111,0:-190.257,-18.0618,0,-190.257,-18.0618,-190.257	1/1:92:0,92,0:0:0:92,0:3225,0:-290.469,-27.6948,0,-290.469,-27.6948,-290.469	1/2:5:0,2,3:0:0:2,3:70,108:-14.8635,-9.17208,-8.57002,-6.04527,0,-5.14218	1/2:85:0,33,52:0:0:33,52:1160,1846:-245.185,-150.765,-140.831,-94.7722,0,-79.1186	1/1:42:0,42,0:0:0:42,0:1495,0:-134.826,-12.6433,0,-134.826,-12.6433,-134.826	1/2:14:0,8,6:0:0:8,6:272,216:-40.0338,-17.9843,-15.5761,-22.4007,0,-20.5945	1/1:75:0,75,0:0:0:75,0:2631,0:-237.038,-22.5773,0,-237.038,-22.5773,-237.038	1/2:11:0,6,5:0:0:6,5:214,176:-32.1275,-14.6799,-12.8737,-17.8016,0,-16.2964	1/1:3:0,3,0:0:0:3,0:106,0:-9.8891,-0.90309,0,-9.8891,-0.90309,-9.8891	1/2:19:0,8,11:0:0:8,11:259,383:-52.376,-31.4919,-29.0837,-21.218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chr08	115873	.	T	C	10088.6	PASS	AB=0.52809;ABP=10.9398;AC=41;AF=0.22043;AN=186;AO=621;CIGAR=1X;DP=3027;DPB=3027;DPRA=0.980795;EPP=1351.49;EPPR=5225.4;GTI=2;LEN=1;MEANALT=1;MQM=59.9968;MQMR=60;NS=93;NUMALT=1;ODDS=4.1856;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22023;QR=85883;RO=2405;RPL=621;RPP=1351.49;RPPR=5225.4;RPR=0;RUN=1;SAF=621;SAP=1351.49;SAR=0;SRF=2405;SRP=5225.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/1:10:3,7:3:108:7:239:-18.8324,0,-7.06487	0/1:108:56,52:56:2004:52:1856:-134.809,0,-148.122	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:23:10,13:10:356:13:464:-35.1738,0,-25.4576	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:40:40,0:40:1416:0:0:0,-12.0412,-127.737	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/0:85:81,4:81:2899:4:135:0,-13.105,-248.663	0/1:19:8,11:8:284:11:372:-28.0857,0,-20.1838	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/1:50:24,26:24:864:26:920:-68.0656,0,-63.0311	0/1:24:7,17:7:244:17:604:-47.4659,0,-15.0747	0/0:130:130,0:130:4640:0:0:0,-39.1339,-417.762	0/0:41:39,2:39:1392:2:72:0,-5.50551,-118.742	0/1:24:14,10:14:500:10:352:-24.7935,0,-38.1115	0/1:7:6,1:6:216:1:27:-0.592573,0,-17.6833	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:127:127,0:127:4500:0:0:0,-38.2308,-405.171	0/1:34:10,24:10:360:24:860:-67.4868,0,-22.5093	0/1:20:10,10:10:360:10:356:-26.3606,0,-26.7237	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:30:12,18:12:423:18:640:-48.8984,0,-29.3742	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/1:49:20,29:20:720:29:1015:-76.9104,0,-50.3783	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:21:14,7:14:500:7:252:-16.7073,0,-39.0145	0/0:23:23,0:23:790:0:0:0,-6.92369,-71.4125	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:30:29,0:29:1031:0:0:0,-8.72987,-92.8878	0/1:13:6,7:6:212:7:248:-18.7508,0,-15.5114	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:53:24,29:24:856:29:1044:-78.3202,0,-61.4065	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:185:101,84:101:3612:84:2954:-210.401,0,-269.596	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:25:6,19:6:212:19:676:-53.6422,0,-11.899	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/1:32:16,16:16:576:16:568:-41.8189,0,-42.542	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:60:60,0:60:2131:0:0:0,-18.0618,-192.058	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:13:5,8:5:180:8:279:-21.5341,0,-12.6387	0/1:42:16,26:16:572:26:915:-70.0223,0,-39.1702	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:51:23,28:23:820:28:988:-73.8814,0,-58.77	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/0:99:98,1:98:3496:1:32:0,-26.6027,-311.653	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:41:22,19:22:783:19:675:-48.7347,0,-58.4507	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:42:22,20:22:792:20:708:-51.4023,0,-58.9624	0/1:36:18,18:18:640:18:636:-46.731,0,-47.0922	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709
chr08	115881	.	G	T	50022.3	PASS	AB=0.475685;ABP=8.81817;AC=145;AF=0.77957;AN=186;AO=2366;CIGAR=1X;DP=2972;DPB=2972;DPRA=10.7572;EPP=5140.71;EPPR=1314.58;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9966;MQMR=59.9967;NS=93;NUMALT=1;ODDS=2.54503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83739;QR=21372;RO=604;RPL=2366;RPP=5140.71;RPPR=1314.58;RPR=0;RUN=1;SAF=2366;SAP=5140.71;SAR=0;SRF=604;SRP=1314.58;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:106:50,56:50:1775:56:2004:-148.724,0,-128.123	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:20:12,8:12:424:8:288:-20.2468,0,-32.4758	1/1:37:0,37:0:0:37:1310:-118.201,-11.1381,0	1/1:33:0,33:0:0:33:1171:-105.697,-9.93399,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:46:0,45:0:0:45:1600:-143.93,-13.5464,0	0/1:23:13,10:13:452:10:360:-25.8206,0,-34.0874	1/1:48:1,47:1:36:47:1671:-147.078,-10.8512,0	1/1:46:0,46:0:0:46:1610:-145.186,-13.8474,0	0/1:21:9,12:9:324:12:428:-32.5372,0,-23.1842	1/1:43:0,43:0:0:43:1481:-133.578,-12.9443,0	1/1:39:0,39:0:0:39:1370:-123.597,-11.7402,0	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:85:4,81:4:144:81:2881:-246.213,-12.2739,0	0/1:19:11,8:11:396:8:280:-19.8197,0,-30.2623	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:16:0,16:0:0:16:552:-50.0056,-4.81648,0	1/1:89:0,89:0:0:89:3156:-284.265,-26.7917,0	0/1:49:26,23:26:913:23:822:-59.5526,0,-67.7335	0/1:22:16,6:16:568:6:216:-13.1679,0,-44.8292	1/1:126:0,126:0:0:126:4453:-400.943,-37.9298,0	1/1:40:2,38:2:72:38:1345:-114.512,-5.20448,0	0/1:24:10,14:10:352:14:485:-36.7523,0,-24.7935	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:125:0,125:0:0:125:4422:-398.154,-37.6288,0	0/1:35:25,10:25:879:10:356:-21.8452,0,-68.8907	0/1:20:10,10:10:351:10:348:-25.6345,0,-25.9061	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:22:11,11:11:396:11:388:-28.6347,0,-29.3601	0/1:9:4,5:4:140:5:167:-12.6491,0,-10.2353	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:35:0,35:0:0:35:1225:-110.551,-10.5361,0	1/1:28:0,28:0:0:28:983:-88.7825,-8.42884,0	0/1:27:15,12:15:532:12:424:-30.3686,0,-40.0853	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/1:45:25,19:25:888:19:671:-47.111,0,-66.6341	1/1:49:0,49:0:0:49:1738:-156.703,-14.7505,0	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	1/1:5:0,5:0:0:5:169:-15.5415,-1.50515,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:20:7,13:7:248:13:455:-35.2614,0,-16.6436	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:28:0,28:0:0:28:976:-88.1415,-8.42884,0	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:5,2:5:171:2:72:-4.72951,0,-13.6182	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:53:28,25:28:988:25:888:-64.2844,0,-73.2793	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:184:81,103:81:2875:103:3674:-275.474,0,-203.598	1/1:55:0,55:0:0:55:1915:-172.624,-16.5567,0	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	0/1:26:19,7:19:680:7:248:-14.8374,0,-53.7024	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:14:7,7:7:235:7:248:-18.4498,0,-17.2635	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:27:0,27:0:0:27:952:-85.9938,-8.12781,0	0/1:31:15,16:15:532:16:576:-42.8431,0,-38.8812	1/1:29:0,29:0:0:29:1016:-91.749,-8.72987,0	1/1:57:0,57:0:0:57:2027:-182.702,-17.1587,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:94:0,94:0:0:94:3309:-298.031,-28.2968,0	0/1:10:6,4:6:207:4:144:-10.3033,0,-15.9566	0/1:43:27,16:27:947:16:576:-39.2307,0,-72.5995	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	1/1:58:0,58:0:0:58:2045:-184.32,-17.4597,0	0/1:50:28,22:28:979:22:783:-55.7414,0,-73.3705	1/1:34:0,34:0:0:34:1196:-107.943,-10.235,0	0/1:23:10,13:10:356:13:455:-34.3583,0,-25.4576	1/1:94:1,93:1:36:93:3291:-292.811,-24.6985,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:37:16,21:16:568:21:731:-54.9723,0,-40.3138	1/1:35:0,35:0:0:35:1251:-112.894,-10.5361,0	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/1:42:21,21:21:736:21:733:-53.6464,0,-53.9191	0/1:35:19,16:19:668:16:576:-41.6389,0,-49.9096	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	1/1:60:1,59:1:36:59:2078:-183.689,-14.4635,0
chr08	137644	.	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chr08	157084	.	A	C	18712.6	PASS	AB=0.385822;ABP=378.383;AC=41;AF=0.218085;AN=188;AO=1297;CIGAR=1X;DP=9026;DPB=9026;DPRA=0.915253;EPP=2819.41;EPPR=16768.9;GTI=5;LEN=1;MEANALT=1.06667;MQM=59.9391;MQMR=59.9929;NS=94;NUMALT=1;ODDS=0.672495;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46345;QR=273663;RO=7721;RPL=0;RPP=2819.41;RPPR=16768.9;RPR=1297;RUN=1;SAF=1297;SAP=2819.41;SAR=0;SRF=7721;SRP=16768.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:22,22:22:792:22:780:-57.2777,0,-58.3604	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:112:64,48:64:2269:48:1716:-120.964,0,-170.756	0/1:198:128,70:128:4572:70:2493:-165.015,0,-352.043	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/1:24:13,11:13:464:11:388:-28.0244,0,-34.8728	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/0:162:162,0:162:5816:0:0:0,-48.7669,-523.551	0/0:107:103,4:103:3688:4:136:0,-19.6347,-319.547	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.8	0/1:34:16,18:16:576:18:644:-48.0556,0,-41.94	0/0:78:78,0:78:2764:0:0:0,-23.4803,-249.003	0/0:173:173,0:173:5981:0:0:0,-52.0782,-538.399	0/1:70:36,34:36:1296:34:1204:-87.5937,0,-95.8718	0/0:72:72,0:72:2481:0:0:0,-21.6742,-223.539	0/0:48:48,0:48:1678:0:0:0,-14.4494,-151.303	0/0:45:45,0:45:1586:0:0:0,-13.5463,-143.026	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:100:100,0:100:3461:0:0:0,-30.103,-311.703	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.868	0/1:64:31,33:31:1104:33:1176:-86.8818,0,-80.4047	0/0:114:113,0:113:4036:0:0:0,-34.0164,-363.069	0/1:95:50,45:50:1788:45:1620:-117.488,0,-132.605	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.115	0/0:470:468,0:468:16738:0:0:0,-140.882,-1505.71	0/1:304:171,133:171:6041:133:4760:-337.045,0,-452.281	0/1:42:28,14:28:928:14:496:-32.331,0,-71.1753	0/0:310:308,1:308:10929:1:36:0,-89.7798,-979.923	0/0:102:96,6:96:3387:6:216:0,-10.9145,-285.253	0/1:86:53,33:53:1877:33:1184:-80.9797,0,-143.318	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:205:205,0:205:7321:0:0:0,-61.7111,-658.94	0/1:109:69,40:69:2461:40:1436:-96.7254,0,-188.93	0/1:50:21,28:21:748:28:1000:-75.2052,0,-52.5352	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:94:61,33:61:2166:33:1172:-77.4907,0,-166.906	0/1:38:25,13:25:870:13:464:-30.6584,0,-67.1729	0/0:186:186,0:186:6610:0:0:0,-55.9916,-594.973	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:172:172,0:172:6048:0:0:0,-51.7772,-544.43	0/1:82:43,39:43:1544:39:1392:-100.895,0,-114.551	0/1:94:63,31:63:2134:31:1108:-71.7342,0,-164.023	0/1:342:251,90:251:8911:90:3224:-187.37,0,-698.965	0/0:104:104,0:104:3666:0:0:0,-31.3071,-330.145	0/0:153:153,0:153:5453:0:0:0,-46.0576,-490.9	0/0:54:53,0:53:1877:0:0:0,-15.9546,-168.847	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:90:74,16:74:2625:16:568:-24.3592,0,-209.404	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:188:188,0:188:6596:0:0:0,-56.5936,-593.731	0/1:38:25,13:25:888:13:464:-30.6584,0,-68.7999	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:65:43,22:43:1529:22:792:-52.0387,0,-118.334	0/1:80:47,33:47:1692:33:1188:-83.1462,0,-128.484	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:264:171,93:171:5964:93:3310:-218.562,0,-457.408	0/0:231:230,1:230:8218:1:36:0,-65.9397,-735.805	0/0:52:51,1:51:1828:1:32:0,-12.4542,-161.602	0/0:112:112,0:112:3921:0:0:0,-33.7154,-353.082	0/0:129:129,0:129:4589:0:0:0,-38.8329,-413.176	0/1:55:28,27:28:1000:27:964:-70.5202,0,-73.7587	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:60:35,25:35:1244:25:896:-62.8986,0,-94.2029	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:150:150,0:150:5338:0:0:0,-45.1545,-480.553	0/1:152:80,72:80:2810:72:2584:-187.052,0,-207.383	0/0:199:199,0:199:7121:0:0:0,-59.905,-640.947	0/0:195:195,0:195:6834:0:0:0,-58.7008,-615.136	0/0:73:73,0:73:2571:0:0:0,-21.9752,-231.636	0/0:118:118,0:118:4197:0:0:0,-35.5215,-377.912	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/1:153:107,46:107:3774:46:1636:-101.341,0,-293.803	0/1:78:49,29:49:1729:29:1026:-69.1722,0,-132.412	0/0:406:405,0:405:14275:0:0:0,-121.917,-1284.17	0/1:80:50,30:50:1788:30:1072:-72.7101,0,-137.12	0/0:48:48,0:48:1667:0:0:0,-14.4494,-150.311	0/1:36:20,16:20:716:16:572:-40.9763,0,-53.9306	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8894	0/1:64:43,21:43:1544:21:752:-48.7403,0,-119.987	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/1:37:24,13:24:860:13:468:-31.3215,0,-66.5837	0/1:84:42,42:42:1512:42:1508:-110.728,0,-111.087	0/1:54:26,28:26:936:28:1004:-74.4202,0,-68.3038	0/0:73:73,0:73:2566:0:0:0,-21.9752,-231.188	0/0:126:126,0:126:4338:0:0:0,-37.9298,-390.595
chr08	161903	.	ACCAA	GCCAA	105046	PASS	AB=0.483607;ABP=8.99075;AC=147;AF=0.781915;AN=188;AO=4911;CIGAR=1X4M;DP=6267;DPB=6268.4;DPRA=0;EPP=10667.1;EPPR=2875.87;GTI=1;LEN=1;MEANALT=1.30851;MQM=59.9155;MQMR=59.9879;NS=94;NUMALT=1;ODDS=0.177117;PAIRED=0;PAIREDR=0;PAO=3.5;PQA=124;PQR=0;PRO=0;QA=175443;QR=46528;RO=1323;RPL=4911;RPP=10667.1;RPPR=2875.87;RPR=0;RUN=1;SAF=0;SAP=10667.1;SAR=4911;SRF=0;SRP=2875.87;SRR=1323;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:23,14:23:808:14:500:-34.1981,0,-61.9016	1/1:63:0,63:0:0:63:2249:-202.672,-18.9649,0	0/1:76:41,35:41:1451:35:1260:-90.8272,0,-108.006	0/1:99:43,56:43:1495:56:1990:-149.572,0,-105.038	0/1:33:17,16:17:602:16:572:-41.8794,0,-44.5762	0/1:32:21,10:21:749:10:347:-21.6815,0,-58.0438	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	1/1:164:2,161:2:72:161:5764:-511.841,-42.591,0	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	1/1:57:0,57:0:0:57:2020:-182.07,-17.1587,0	0/1:52:22,30:22:786:30:1064:-80.4181,0,-55.4108	1/1:88:0,87:0:0:87:3124:-281.026,-26.1896,0	1/1:64:0,63:0:0:63:2249:-202.084,-18.9649,0	0/1:81:42,39:42:1490:39:1400:-101.916,0,-110.011	1/1:40:0,40:0:0:40:1436:-129.524,-12.0412,0	1/1:46:0,45:0:0:45:1604:-144.349,-13.5464,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:22:0,22:0:0:22:770:-69.6193,-6.62266,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:55:0,55:0:0:55:1953:-176.044,-16.5567,0	1/1:113:0,113:0:0:113:4045:-364.234,-34.0164,0	0/1:75:56,19:56:1990:19:672:-38.2296,0,-156.795	1/1:55:0,55:0:0:55:1964:-177.03,-16.5567,0	0/1:26:9,16:9:317:16:568:-43.6229,0,-21.0387	1/1:31:0,31:0:0:31:1104:-99.6421,-9.33193,0	1/1:209:0,207:0:0:207:7385:-664.385,-62.3132,0	0/1:145:81,64:81:2862:64:2288:-162.515,0,-214.168	0/1:28:13,15:13:464:15:527:-39.3313,0,-33.6688	1/1:212:0,211:0:0:211:7564:-680.43,-63.5173,0	1/1:161:9,151:9:319:151:5424:-458.996,-19.4727,0	0/1:80:46,34:46:1580:34:1216:-85.6642,0,-118.402	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:10:0,10:0:0:10:356:-32.3779,-3.0103,0	1/1:125:0,124:0:0:124:4432:-398.792,-37.3277,0	0/1:131:47,83:47:1610:83:2945:-225.789,0,-105.691	0/1:35:12,20:12:423:20:716:-54.7645,0,-28.4144	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:91:45,46:45:1554:46:1656:-121.935,0,-112.755	0/1:25:12,13:12:426:13:468:-34.9339,0,-31.1521	1/1:127:0,127:0:0:127:4526:-407.502,-38.2308,0	1/1:40:0,39:0:0:39:1404:-126.368,-11.7402,0	1/1:45:0,45:0:0:45:1612:-145.369,-13.5464,0	0/1:88:36,51:36:1264:51:1832:-138.758,0,-87.6567	0/1:81:48,33:48:1675:33:1176:-81.7543,0,-126.65	0/1:144:80,64:80:2812:64:2292:-163.191,0,-209.972	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	1/1:104:0,104:0:0:104:3720:-335.002,-31.3071,0	1/1:64:0,64:0:0:64:2276:-205.103,-19.2659,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:105:49,55:49:1733:55:1947:-143.775,0,-124.528	1/1:63:0,63:0:0:63:2252:-202.884,-18.9649,0	0/1:6:4,2:4:139:2:72:-5.03054,0,-11.0463	1/1:97:0,96:0:0:96:3429:-308.458,-28.8989,0	0/1:7:4,3:4:142:3:108:-7.96796,0,-11.022	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:7:5,2:5:179:2:72:-4.72951,0,-14.3532	0/1:67:27,39:27:932:39:1373:-103.745,0,-64.0693	0/1:96:47,47:47:1628:47:1680:-122.884,0,-118.206	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:132:67,64:67:2337:64:2292:-166.747,0,-170.794	1/1:141:0,138:0:0:138:4914:-442.093,-41.5421,0	1/1:65:0,65:0:0:65:2332:-210.138,-19.567,0	1/1:66:0,65:0:0:65:2332:-209.832,-19.567,0	1/1:110:0,109:0:0:109:3896:-350.594,-32.8123,0	0/1:164:109,54:109:3849:54:1932:-124.623,0,-297.121	1/1:30:1,29:1:36:29:1038:-90.136,-5.43263,0	1/1:45:0,45:0:0:45:1605:-144.738,-13.5464,0	0/1:55:23,32:23:821:32:1152:-87.4335,0,-57.6559	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:100:0,100:0:0:100:3561:-320.698,-30.103,0	0/1:55:20,35:20:702:35:1252:-96.2382,0,-46.9462	1/1:90:0,90:0:0:90:3212:-289.243,-27.0927,0	1/1:112:2,109:2:69:109:3874:-342.295,-27.2166,0	1/1:59:0,59:0:0:59:2108:-189.988,-17.7608,0	1/1:68:0,68:0:0:68:2421:-218.145,-20.47,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:63:33,30:33:1172:30:1068:-77.4491,0,-86.8232	0/1:75:36,39:36:1273:39:1377:-101.641,0,-92.2948	1/1:88:0,88:0:0:88:3144:-283.111,-26.4906,0	0/1:75:32,42:32:1122:42:1508:-113.379,0,-78.6508	1/1:67:0,67:0:0:67:2392:-215.437,-20.169,0	0/1:21:9,12:9:316:12:432:-32.8996,0,-22.4567	1/1:82:1,81:1:36:81:2895:-257.187,-21.0862,0	1/1:29:0,28:0:0:28:1008:-90.7826,-8.42884,0	0/1:64:34,29:34:1199:29:1040:-74.609,0,-88.91	1/1:62:0,62:0:0:62:2215:-199.591,-18.6639,0	0/1:32:23,9:23:814:9:324:-19.8729,0,-63.9485	0/1:105:48,57:48:1703:57:2044:-152.505,0,-121.83	0/1:49:33,16:33:1181:16:572:-37.063,0,-91.848	1/1:86:0,86:0:0:86:3060:-275.631,-25.8886,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0
chr08	183122	.	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chr08	231811	.	A	G	14361.6	PASS	AB=0.475806;ABP=12.4667;AC=39;AF=0.209677;AN=186;AO=900;CIGAR=1X;DP=4896;DPB=4896;DPRA=0.973428;EPP=1957.34;EPPR=8630.32;GTI=3;LEN=1;MEANALT=1.06977;MQM=60;MQMR=59.9867;NS=93;NUMALT=1;ODDS=3.26726;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32133;QR=142972;RO=3993;RPL=0;RPP=1957.34;RPPR=8630.32;RPR=900;RUN=1;SAF=0;SAP=1957.34;SAR=900;SRF=0;SRP=8673.7;SRR=3993;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:8,11:8:279:11:392:-29.9005,0,-19.728	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:68:26,42:26:932:42:1508:-115.545,0,-63.7288	0/1:171:84,86:84:3007:86:3073:-225.41,0,-219.474	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/0:54:52,2:52:1872:2:72:0,-9.4189,-161.922	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/0:37:37,0:37:1299:0:0:0,-11.1381,-117.208	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:124:124,0:124:4443:0:0:0,-37.3277,-400.04	0/0:143:143,0:143:5127:0:0:0,-43.0473,-461.571	0/1:41:16,25:16:576:25:900:-68.9788,0,-39.8328	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.845	0/1:36:24,12:24:855:12:432:-28.3841,0,-66.4331	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.496	0/0:145:145,0:145:5185:0:0:0,-43.6493,-465.339	0/1:119:70,49:70:2512:49:1764:-123.221,0,-190.509	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/0:136:136,0:136:4871:0:0:0,-40.9401,-438.514	0/0:128:118,10:118:4185:10:360:0,-5.78754,-344.087	0/1:66:34,32:34:1224:32:1140:-83.0412,0,-90.5991	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:99:98,1:98:3509:1:36:0,-26.2037,-312.42	0/1:55:39,16:39:1404:16:567:-34.8041,0,-110.103	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:73:34,39:34:1209:39:1395:-103.873,0,-87.1389	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:44:20,24:20:720:24:860:-64.4765,0,-51.8835	0/1:54:27,27:27:972:27:959:-70.3698,0,-71.5423	0/1:95:51,44:51:1836:44:1580:-113.894,0,-136.923	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:63:41,22:41:1472:22:792:-52.6408,0,-113.811	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.466	0/1:20:11,9:11:392:9:305:-21.7566,0,-29.5995	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:15:3,12:3:108:12:424:-33.981,0,-5.55972	0/1:27:16,11:16:576:11:387:-27.0381,0,-44.0472	0/1:50:31,19:31:1103:19:676:-46.1165,0,-84.5283	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:157:77,80:77:2747:80:2849:-209.385,0,-200.21	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/1:38:33,5:33:1180:5:180:-5.11293,0,-95.0689	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/1:76:26,49:26:932:49:1764:-136.107,0,-61.2618	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:59:27,32:27:964:32:1139:-85.0576,0,-69.3161	0/0:94:94,0:94:3361:0:0:0,-28.2968,-302.705	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/1:58:31,27:31:1116:27:972:-70.3382,0,-83.292	0/1:88:34,54:34:1224:54:1924:-146.946,0,-83.9764	0/0:157:157,0:157:5579:0:0:0,-47.2617,-502.235	0/1:43:31,12:31:1107:12:432:-26.2769,0,-86.9959	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:40:25,15:25:896:15:521:-35.1751,0,-68.9192	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:45:24,21:24:864:21:737:-53.1043,0,-64.5362	0/1:37:15,22:15:536:22:761:-57.6685,0,-37.4367	0/0:90:87,2:87:3124:2:72:0,-20.2149,-274.597	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011
chr08	298081	.	T	C	132839	PASS	AB=0.48806;ABP=6.32909;AC=149;AF=0.801075;AN=186;AO=6150;CIGAR=1X;DP=7536;DPB=7536;DPRA=81.9022;EPP=13322.8;EPPR=3010.5;GTI=1;LEN=1;MEANALT=1.01087;MQM=55.6868;MQMR=55.8202;NS=93;NUMALT=1;ODDS=1.02773;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219314;QR=49594;RO=1385;RPL=6146;RPP=13322.8;RPPR=3010.5;RPR=4;RUN=1;SAF=6150;SAP=13357.6;SAR=0;SRF=1385;SRP=3010.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:13,10:13:468:10:360:-25.6727,0,-35.525	1/1:159:0,159:0:0:159:5638:-506.007,-47.8638,0	0/1:62:32,30:32:1137:30:1072:-77.4416,0,-83.8693	0/1:116:53,62:53:1908:62:2215:-164.394,0,-136.144	0/1:32:16,16:16:572:16:561:-41.1631,0,-42.1567	0/1:50:21,29:21:752:29:1025:-77.4747,0,-52.9041	1/1:70:0,70:0:0:70:2500:-224.132,-21.0721,0	1/1:93:0,93:0:0:93:3323:-299.201,-27.9958,0	1/1:63:0,63:0:0:63:2238:-201.47,-18.9649,0	1/1:149:0,149:0:0:149:5295:-474.227,-44.8535,0	1/1:51:0,51:0:0:51:1817:-162.962,-15.3525,0	1/1:64:0,64:0:0:64:2291:-205.277,-19.2659,0	1/1:80:0,80:0:0:80:2847:-256.275,-24.0824,0	1/1:86:0,86:0:0:86:3079:-277.014,-25.8886,0	1/1:76:0,76:0:0:76:2706:-242.999,-22.8783,0	1/1:42:0,42:0:0:42:1504:-135.526,-12.6433,0	1/1:102:0,102:0:0:102:3635:-326.864,-30.7051,0	1/1:61:0,61:0:0:61:2161:-194.461,-18.3628,0	1/1:26:0,26:0:0:26:928:-83.6089,-7.82678,0	1/1:151:0,151:0:0:151:5387:-483.154,-45.4555,0	1/1:133:0,133:0:0:133:4759:-427.855,-40.037,0	0/1:56:34,22:34:1216:22:792:-54.6742,0,-92.5893	1/1:100:0,100:0:0:100:3571:-320.844,-30.103,0	0/1:131:82,49:82:2944:49:1730:-115.677,0,-225.252	1/1:62:0,62:0:0:62:2216:-199.474,-18.6639,0	1/1:238:0,238:0:0:238:8462:-758.579,-71.6451,0	0/1:153:73,80:73:2624:80:2856:-210.845,0,-189.935	1/1:27:0,27:0:0:27:972:-87.7619,-8.12781,0	1/1:146:0,146:0:0:146:5225:-468.807,-43.9504,0	1/1:126:5,121:5:180:121:4295:-368.084,-21.3856,0	0/1:75:47,28:47:1692:28:1008:-68.3958,0,-129.635	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	1/1:2:0,2:0:0:2:72:-6.83347,-0.60206,0	1/1:4:0,4:0:0:4:135:-12.4796,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7151,-1.80618,0	1/1:4:0,4:0:0:4:140:-12.9414,-1.20412,0	1/1:241:1,240:1:36:240:8550:-763.065,-68.9537,0	0/1:149:83,66:83:2972:66:2372:-168.619,0,-222.351	0/1:54:26,28:26:921:28:989:-72.9634,0,-66.6075	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	0/1:135:69,66:69:2476:66:2342:-169.641,0,-182.111	0/1:36:16,20:16:576:20:720:-54.124,0,-41.3131	1/1:89:0,89:0:0:89:3183:-286.099,-26.7917,0	1/1:86:0,86:0:0:86:3076:-276.443,-25.8886,0	1/1:68:0,68:0:0:68:2434:-218.847,-20.47,0	0/1:57:28,29:28:1004:29:1040:-76.6473,0,-72.6943	0/1:103:59,44:59:2120:44:1551:-108.795,0,-159.934	0/1:113:46,67:46:1656:67:2392:-180.713,0,-115.175	1/1:117:1,116:1:36:116:4131:-367.272,-31.6248,0	1/1:101:0,101:0:0:101:3590:-322.191,-30.404,0	1/1:112:3,109:3:108:109:3895:-339.976,-23.6506,0	0/1:4:2,2:2:72:2:68:-5.25047,0,-5.62767	0/1:100:51,49:51:1809:49:1727:-125.433,0,-132.63	1/1:21:0,21:0:0:21:752:-67.8362,-6.32163,0	0/1:14:12,2:12:417:2:72:-2.62039,0,-33.6333	1/1:127:0,127:0:0:127:4539:-408.101,-38.2308,0	0/1:23:12,11:12:432:11:392:-28.6718,0,-32.1861	1/1:4:0,4:0:0:4:144:-13.3009,-1.20412,0	0/1:10:4,6:4:144:6:212:-16.3966,0,-10.2921	1/1:55:0,55:0:0:55:1976:-177.738,-16.5567,0	0/1:105:48,57:48:1707:57:2022:-150.428,0,-122.086	.:.:.:.:.:.:.:.	0/1:205:92,113:92:3304:113:4052:-301.815,0,-234.949	1/1:163:0,163:0:0:163:5806:-521.52,-49.0679,0	1/1:109:2,107:2:72:107:3817:-335.774,-26.0506,0	1/1:62:0,62:0:0:62:2224:-200.056,-18.6639,0	1/1:118:0,118:0:0:118:4204:-377.442,-35.5215,0	0/1:74:56,18:56:1996:18:644:-35.9738,0,-157.329	1/1:24:0,24:0:0:24:852:-75.4031,-7.22472,0	1/1:72:1,71:1:36:71:2556:-226.474,-18.0759,0	0/1:65:32,33:32:1152:33:1171:-85.4986,0,-84.2456	1/1:37:0,37:0:0:37:1303:-117.49,-11.1381,0	1/1:33:0,33:0:0:33:1171:-105.529,-9.93399,0	0/1:103:48,55:48:1712:55:1901:-140.027,0,-122.548	1/1:80:0,80:0:0:80:2859:-257.032,-24.0824,0	1/1:98:0,98:0:0:98:3512:-314.999,-29.5009,0	1/1:70:0,70:0:0:70:2484:-223.704,-21.0721,0	1/1:121:0,121:0:0:121:4318:-388.104,-36.4246,0	0/1:2:1,1:1:36:1:36:-2.99521,0,-2.99521	0/1:88:40,48:40:1440:48:1708:-127.421,0,-102.701	0/1:72:27,45:27:972:45:1594:-121.759,0,-64.9858	1/1:171:0,171:0:0:171:6137:-550.116,-51.4761,0	0/1:102:49,53:49:1756:53:1896:-139.72,0,-126.379	1/1:73:0,73:0:0:73:2624:-235.952,-21.9752,0	0/1:113:54,59:54:1923:59:2094:-154.504,0,-138.991	1/1:140:0,140:0:0:140:4998:-448.53,-42.1442,0	1/1:33:0,33:0:0:33:1171:-105.66,-9.93399,0	0/1:85:34,51:34:1224:51:1832:-139.459,0,-84.6701	1/1:64:0,64:0:0:64:2289:-205.302,-19.2659,0	0/1:36:25,11:25:900:11:396:-25.0605,0,-70.3783	0/1:66:39,27:39:1372:27:959:-66.714,0,-103.84	0/1:68:47,21:47:1684:21:752:-47.4042,0,-131.185	1/1:130:0,130:0:0:130:4626:-415.862,-39.1339,0	1/1:112:0,112:0:0:112:4020:-360.896,-33.7154,0
chr08	298097	.	G	C	22453.3	PASS	AB=0.508234;ABP=4.58364;AC=37;AF=0.198925;AN=186;AO=1371;CIGAR=1X;DP=7517;DPB=7517;DPRA=1.03066;EPP=2980.1;EPPR=13335.9;GTI=1;LEN=1;MEANALT=1.07317;MQM=55.8767;MQMR=55.6805;NS=93;NUMALT=1;ODDS=0.0556832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48591;QR=218827;RO=6140;RPL=1371;RPP=2980.1;RPPR=13335.9;RPR=0;RUN=1;SAF=1371;SAP=2980.1;SAR=0;SRF=6140;SRP=13335.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:10,13:10:345:13:464:-35.1634,0,-24.3101	0/0:163:163,0:163:5812:0:0:0,-49.0679,-521.294	0/1:59:28,31:28:993:31:1065:-78.3429,0,-71.7933	0/1:117:63,53:63:2237:53:1883:-134.167,0,-166.068	0/1:32:16,16:16:576:16:576:-42.5173,0,-42.5194	0/1:50:29,21:29:1040:21:748:-52.5436,0,-78.6102	0/0:70:70,0:70:2494:0:0:0,-21.0721,-223.591	0/0:93:93,0:93:3306:0:0:0,-27.9958,-297.246	0/0:60:59,0:59:2120:0:0:0,-17.7608,-190.573	0/0:146:146,0:146:5202:0:0:0,-43.9504,-466.141	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.307	0/0:64:64,0:64:2279:0:0:0,-19.2659,-204.203	0/0:76:76,0:76:2698:0:0:0,-22.8783,-242.843	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.212	0/0:74:74,0:74:2590:0:0:0,-22.2762,-232.578	0/0:44:44,0:44:1559:0:0:0,-13.2453,-140.472	0/0:101:100,0:100:3575:0:0:0,-30.103,-321.166	0/0:62:62,0:62:2188:0:0:0,-18.6639,-196.89	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.4604	0/0:153:153,0:153:5449:0:0:0,-46.0576,-488.429	0/0:132:132,0:132:4717:0:0:0,-39.736,-424.157	0/1:55:22,33:22:788:33:1153:-87.4196,0,-54.6164	0/0:99:99,0:99:3547:0:0:0,-29.802,-318.682	0/1:127:47,79:47:1680:79:2828:-215.98,0,-112.264	0/0:62:62,0:62:2198:0:0:0,-18.6639,-197.833	0/0:242:242,0:242:8676:0:0:0,-72.8493,-778.44	0/1:150:81,69:81:2892:69:2471:-177.111,0,-214.895	0/0:28:28,0:28:987:0:0:0,-8.42884,-89.0392	0/0:145:145,0:145:5163:0:0:0,-43.6493,-462.944	0/0:126:121,5:121:4306:5:180:0,-21.3856,-369.118	0/1:78:32,46:32:1124:46:1639:-123.968,0,-77.9086	1/1:1:0,1:0:0:1:36:-3.59656,-0.30103,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45543	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3099	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7151	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3099	0/0:239:238,1:238:8489:1:32:0,-68.7483,-757.1	0/1:150:69,81:69:2464:81:2904:-216.157,0,-176.241	0/1:56:29,27:29:1019:27:955:-69.0648,0,-75.0112	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0704	0/1:134:65,69:65:2316:69:2420:-177.418,0,-167.005	0/1:34:18,16:18:640:16:576:-41.9152,0,-47.5314	0/0:88:88,0:88:3139:0:0:0,-26.4906,-282.3	0/0:88:88,0:88:3143:0:0:0,-26.4906,-282.398	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.564	0/1:53:26,27:26:936:27:972:-71.0217,0,-68.5035	0/1:107:46,61:46:1648:61:2152:-161.24,0,-116.26	0/1:112:67,45:67:2396:45:1612:-111.556,0,-180.949	0/0:113:112,1:112:3996:1:36:0,-30.4207,-355.727	0/0:102:102,0:102:3644:0:0:0,-30.7051,-327.471	0/0:113:110,3:110:3940:3:108:0,-23.9516,-344.091	0/1:4:2,2:2:72:2:72:-5.62767,0,-5.62851	0/1:99:49,50:49:1748:50:1784:-130.598,0,-127.704	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.4779	0/1:15:2,13:2:72:13:453:-36.5707,0,-2.31936	0/0:127:126,0:126:4502:0:0:0,-37.9298,-403.851	0/1:23:11,12:11:396:12:415:-30.6985,0,-29.0331	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3009	0/1:10:6,4:6:216:4:140:-9.92512,0,-16.7608	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.572	0/1:104:57,47:57:2020:47:1675:-119.616,0,-150.546	.:.:.:.:.:.:.:.	0/1:207:117,90:117:4146:90:3193:-224.388,0,-309.673	0/0:162:162,0:162:5774:0:0:0,-48.7669,-518.464	0/0:106:104,2:104:3728:2:66:0,-25.6626,-328.536	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.492	0/0:115:115,0:115:4104:0:0:0,-34.6184,-368.626	0/1:73:17,56:17:604:56:1975:-155.757,0,-32.6783	0/0:22:22,0:22:788:0:0:0,-6.62266,-70.5796	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.182	0/1:64:32,32:32:1135:32:1136:-83.1118,0,-82.3552	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.764	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.336	0/1:102:54,48:54:1921:48:1703:-122.041,0,-142.167	0/0:81:81,0:81:2900:0:0:0,-24.3834,-260.69	0/0:101:101,0:101:3615:0:0:0,-30.404,-324.307	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.102	0/0:123:123,0:123:4399:0:0:0,-37.0267,-394.876	0/1:2:1,1:1:36:1:32:-2.59685,0,-2.99521	0/1:89:50,39:50:1788:39:1375:-96.7281,0,-134.272	0/1:74:44,29:44:1564:29:971:-65.1651,0,-118.48	0/0:176:176,0:176:6245:0:0:0,-52.9813,-559.933	0/1:103:54,49:54:1898:49:1729:-123.716,0,-139.622	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.492	0/1:113:59,54:59:2099:54:1917:-138.457,0,-154.954	0/0:138:138,0:138:4897:0:0:0,-41.5421,-439.428	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.403	0/1:84:50,34:50:1792:34:1199:-82.7817,0,-136.163	0/0:63:63,0:63:2247:0:0:0,-18.9649,-201.528	0/1:36:11,25:11:392:25:896:-70.0185,0,-24.6988	0/1:65:26,39:26:910:39:1379:-104.775,0,-62.6115	0/1:68:21,47:21:748:47:1671:-130.019,0,-47.0446	0/0:131:131,0:131:4683:0:0:0,-39.4349,-420.834	0/0:111:111,0:111:3950:0:0:0,-33.4143,-354.793
chr08	298157	.	A	G	23967.1	PASS	AB=0.55524;ABP=68.2638;AC=39;AF=0.207447;AN=188;AO=1386;CIGAR=1X;DP=6175;DPB=6175;DPRA=1.12914;EPP=3003.99;EPPR=10066.2;GTI=1;LEN=1;MEANALT=1;MQM=59.8543;MQMR=59.8701;NS=94;NUMALT=1;ODDS=1.12351;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49515;QR=171808;RO=4789;RPL=1;RPP=3003.99;RPPR=10066.2;RPR=1385;RUN=1;SAF=0;SAP=3012.67;SAR=1386;SRF=0;SRP=10402.2;SRR=4789;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:15,22:15:540:22:779:-59.2906,0,-37.7984	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.803	0/1:127:74,53:74:2652:53:1895:-132.593,0,-200.693	0/1:160:77,83:77:2755:83:2976:-219.908,0,-200.026	0/1:35:18,17:18:644:17:612:-44.8774,0,-47.7545	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:145:145,0:145:5204:0:0:0,-43.6493,-468.339	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.176	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.812	0/0:74:74,0:74:2664:0:0:0,-22.2762,-239.933	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:67:67,0:67:2403:0:0:0,-20.169,-216.526	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:72:18,54:18:640:54:1923:-151.664,0,-36.2552	0/0:51:51,0:51:1821:0:0:0,-15.3525,-164.062	0/1:42:21,21:21:752:21:752:-55.363,0,-55.363	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:163:163,0:163:5856:0:0:0,-49.0679,-527.148	0/1:165:67,98:67:2393:98:3489:-264.465,0,-165.955	0/0:33:33,0:33:1179:0:0:0,-9.93399,-106.417	0/0:187:186,1:186:6688:1:32:0,-53.0933,-598.792	0/0:68:66,2:66:2372:2:72:0,-13.6333,-206.901	0/1:71:29,42:29:1040:42:1496:-113.558,0,-72.2776	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5049	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:165:165,0:165:5916:0:0:0,-49.6699,-532.441	0/1:84:38,46:38:1364:46:1640:-122.602,0,-97.7742	0/1:45:24,21:24:860:21:752:-54.4599,0,-64.1755	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:115:57,58:57:2037:58:2080:-152.804,0,-148.982	0/1:36:15,21:15:540:21:752:-57.1692,0,-38.0995	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.411	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:60:29,31:29:1044:31:1116:-82.6865,0,-76.213	0/1:87:40,47:40:1432:47:1675:-124.8,0,-102.988	0/1:148:49,99:49:1760:99:3537:-273.98,0,-114.009	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.117	0/0:108:107,1:107:3829:1:36:0,-28.913,-341.207	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:12:2,10:2:72:10:360:-29.1286,0,-3.22436	0/1:78:24,54:24:864:54:1944:-151.749,0,-54.6022	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.862	0/1:26:14,12:14:504:12:424:-30.6696,0,-37.8713	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:61:25,36:25:900:36:1280:-97.1393,0,-62.9223	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:240:117,123:117:4200:123:4366:-320.866,0,-305.933	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.864	0/0:41:39,2:39:1396:2:72:0,-5.50551,-119.102	0/0:45:45,0:45:1620:0:0:0,-13.5463,-145.99	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.795	0/1:127:37,90:37:1328:90:3208:-250.704,0,-81.5914	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/1:46:33,13:33:1176:13:468:-28.6123,0,-92.3004	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.14	0/1:78:43,35:43:1548:35:1256:-89.8616,0,-116.11	0/0:98:98,0:98:3507:0:0:0,-29.5009,-315.804	0/0:216:216,0:216:7752:0:0:0,-65.0225,-697.611	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.8	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:98:47,51:47:1688:51:1824:-134.937,0,-122.706	0/1:90:34,56:34:1215:56:1996:-152.819,0,-82.5631	0/0:107:107,0:107:3831:0:0:0,-32.2102,-344.758	0/1:51:24,27:24:864:27:968:-72.0848,0,-62.73	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:41:22,19:22:792:19:667:-48.0079,0,-59.2588	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.795	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:55:34,21:34:1224:21:748:-51.0873,0,-93.8746	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:19:6,13:6:216:13:468:-36.7229,0,-14.0709	0/1:59:33,26:33:1172:26:936:-66.7987,0,-88.012	0/1:61:20,41:20:712:41:1476:-114.773,0,-46.0438	0/0:176:176,0:176:6319:0:0:0,-52.9813,-568.772	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866
chr08	298175	.	ACGCT	ATGCT	101721	PASS	AB=0.437779;ABP=85.969;AC=149;AF=0.792553;AN=188;AO=4732;CIGAR=1M1X3M;DP=6160;DPB=6161.8;DPRA=10.2793;EPP=10278.4;EPPR=3040.9;GTI=3;LEN=1;MEANALT=1.25;MQM=59.8895;MQMR=59.8685;NS=94;NUMALT=1;ODDS=0.764021;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169541;QR=49294;RO=1399;RPL=4732;RPP=10278.4;RPPR=3040.9;RPR=0;RUN=1;SAF=0;SAP=10278.4;SAR=4732;SRF=0;SRP=3040.9;SRR=1399;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:22,15:22:776:15:536:-37.4367,0,-59.0206	1/1:50:0,47:0:0:47:1684:-151.491,-14.1484,0	0/1:126:54,72:54:1881:72:2584:-194.877,0,-131.633	0/1:160:85,75:85:3005:75:2692:-194.359,0,-222.519	0/1:34:17,17:17:611:17:612:-45.1584,0,-45.0682	0/1:12:10,2:10:342:2:68:-2.84535,0,-27.4978	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:144:0,143:0:0:143:5113:-459.794,-43.0473,0	1/1:58:0,58:0:0:58:2065:-186.119,-17.4597,0	1/1:58:1,54:1:33:54:1928:-170.476,-13.5948,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:77:0,77:0:0:77:2756:-248.21,-23.1793,0	1/1:72:0,72:0:0:72:2592:-233.457,-21.6742,0	1/1:37:0,36:0:0:36:1292:-116.224,-10.8371,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:84:1,83:1:31:83:2957:-263.263,-22.1871,0	0/1:72:53,18:53:1873:18:648:-36.9193,0,-147.115	1/1:51:0,51:0:0:51:1832:-165.053,-15.3525,0	0/1:42:21,21:21:741:21:752:-55.363,0,-54.3701	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:162:0,161:0:0:161:5764:-518.645,-48.4658,0	0/1:168:100,68:100:3515:68:2406:-166.221,0,-265.903	1/1:33:0,33:0:0:33:1180:-106.498,-9.93399,0	1/1:188:1,185:1:36:185:6632:-593.359,-52.7531,0	1/1:68:2,66:2:72:66:2368:-206.541,-13.6333,0	0/1:73:42,29:42:1460:29:1043:-72.2095,0,-109.96	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:9:0,8:0:0:8:284:-25.5442,-2.40824,0	0/0:8:8,0:8:285:0:0:0,-2.40824,-25.9944	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:162:0,162:0:0:162:5787:-520.873,-48.7669,0	0/1:84:47,37:47:1665:37:1328:-94.5357,0,-124.85	0/1:45:21,24:21:744:24:856:-63.8148,0,-53.7374	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:115:57,57:57:2032:57:2052:-150.274,0,-148.43	0/1:34:21,13:21:739:13:453:-30.8646,0,-56.598	1/1:70:1,68:1:27:68:2440:-217.225,-18.3268,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:59:31,28:31:1066:28:1008:-73.2756,0,-78.4833	0/1:88:45,40:45:1571:40:1425:-102.598,0,-115.709	0/1:151:102,49:102:3576:49:1750:-112.22,0,-276.591	1/1:65:0,65:0:0:65:2328:-209.757,-19.567,0	1/1:106:1,105:1:36:105:3761:-335.089,-28.3109,0	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	0/1:12:10,2:10:354:2:72:-3.22436,0,-28.584	0/1:79:53,24:53:1903:24:860:-54.1832,0,-148.009	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/0:5:5,0:5:173:0:0:0,-1.50515,-15.9096	1/1:88:0,87:0:0:87:3117:-280.623,-26.1896,0	0/1:26:12,14:12:425:14:500:-37.5094,0,-30.7601	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:6:5,1:5:178:1:36:-1.79209,0,-14.5625	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:61:36,25:36:1268:25:900:-62.9223,0,-96.0559	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:239:124,115:124:4397:115:4124:-299.394,0,-323.953	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:40:2,38:2:72:38:1368:-116.584,-5.20448,0	1/1:46:0,45:0:0:45:1616:-145.333,-13.5464,0	1/1:108:0,108:0:0:108:3876:-348.959,-32.5112,0	0/1:130:91,39:91:3199:39:1400:-87.1653,0,-248.993	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:44:13,31:13:468:31:1112:-87.146,0,-29.2143	1/1:14:0,14:0:0:14:504:-45.6741,-4.21442,0	1/1:120:0,119:0:0:119:4264:-383.543,-35.8226,0	0/1:77:35,42:35:1250:42:1512:-113.195,0,-89.6225	1/1:97:0,97:0:0:97:3456:-311.246,-29.1999,0	1/1:217:0,216:0:0:216:7752:-697.252,-65.0225,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:134:0,134:0:0:134:4816:-433.518,-40.338,0	0/1:11:7,4:7:250:4:144:-10.0023,0,-19.5354	0/1:99:52,47:52:1838:47:1680:-121.685,0,-135.893	0/1:88:55,33:55:1953:33:1188:-80.738,0,-149.553	1/1:103:0,102:0:0:102:3660:-329.313,-30.7051,0	0/1:52:28,24:28:963:24:860:-62.054,0,-71.3124	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:41:19,21:19:661:21:737:-54.3263,0,-47.4843	1/1:117:0,117:0:0:117:4204:-378.517,-35.2205,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:54:21,33:21:743:33:1188:-90.9372,0,-50.9349	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	0/1:20:14,6:14:476:6:216:-13.7699,0,-37.1376	0/1:60:26,34:26:916:34:1181:-88.5168,0,-64.694	0/1:62:43,19:43:1510:19:684:-43.2085,0,-117.52	1/1:176:0,175:0:0:175:6269:-563.999,-52.6803,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0
chr08	299984	.	G	A	38479.8	PASS	AB=0.495607;ABP=3.79244;AC=36;AF=0.191489;AN=188;AO=2326;CIGAR=1X;DP=11847;DPB=11847;DPRA=1.32574;EPP=5053.86;EPPR=20664.6;GTI=0;LEN=1;MEANALT=1.02381;MQM=59.9824;MQMR=59.9859;NS=94;NUMALT=1;ODDS=4.87176;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82571;QR=340081;RO=9515;RPL=0;RPP=5053.86;RPPR=20664.6;RPR=2326;RUN=1;SAF=2326;SAP=5053.86;SAR=0;SRF=9515;SRP=20664.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:10,13:10:360:13:456:-34.4495,0,-25.8206	0/0:173:173,0:173:6189:0:0:0,-52.0782,-557.104	0/1:422:227,195:227:8137:195:6937:-497.366,0,-605.307	0/1:293:156,137:156:5557:137:4872:-350.435,0,-412.054	0/1:88:43,45:43:1540:45:1592:-117.08,0,-112.402	0/1:66:27,39:27:968:39:1384:-104.989,0,-67.567	0/0:127:126,0:126:4512:0:0:0,-37.9298,-405.888	0/0:219:219,0:219:7807:0:0:0,-65.9256,-702.658	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:93:93,0:93:3313:0:0:0,-27.9958,-298.388	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:75:75,0:75:2661:0:0:0,-22.5772,-239.735	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.956	0/0:53:53,0:53:1866:0:0:0,-15.9546,-168.215	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.586	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:304:304,0:304:10897:0:0:0,-91.5131,-980.625	0/0:158:158,0:158:5599:0:0:0,-47.5627,-504.033	0/1:255:74,181:74:2637:181:6408:-500.047,0,-160.813	0/0:150:149,0:149:5336:0:0:0,-44.8535,-480.009	0/1:60:33,27:33:1188:27:941:-66.9399,0,-89.1668	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.877	0/0:441:439,2:439:15699:2:72:0,-125.918,-1405.77	0/1:232:126,106:126:4528:106:3785:-271.009,0,-337.846	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/0:415:413,2:413:14767:2:72:0,-118.091,-1321.93	0/0:197:195,2:195:6989:2:72:0,-52.4662,-622.229	0/1:160:83,77:83:2969:77:2720:-196.824,0,-219.276	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:249:248,0:248:8891:0:0:0,-74.6554,-799.811	0/1:243:127,116:127:4525:116:4122:-298.013,0,-334.268	0/1:95:60,35:60:2160:35:1260:-85.1076,0,-166.069	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:130:71,59:71:2540:59:2096:-149.776,0,-189.717	0/1:49:28,21:28:999:21:748:-52.8948,0,-75.474	0/0:210:209,0:209:7481:0:0:0,-62.9153,-672.962	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/1:88:52,36:52:1864:36:1272:-88.2922,0,-141.549	0/1:184:101,83:101:3617:83:2945:-209.894,0,-270.344	0/1:311:163,148:163:5822:148:5246:-378.659,0,-430.47	0/0:104:103,0:103:3661:0:0:0,-31.0061,-329.333	0/0:210:210,0:210:7517:0:0:0,-63.2163,-676.558	0/0:153:153,0:153:5441:0:0:0,-46.0576,-489.819	0/1:21:15,6:15:540:6:189:-10.9983,0,-42.6149	0/1:197:117,80:117:4208:80:2856:-197.975,0,-319.596	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/0:218:218,0:218:7745:0:0:0,-65.6245,-697.081	0/1:46:21,24:21:741:24:856:-63.4551,0,-53.1057	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:19:7,12:7:252:12:428:-33.131,0,-17.3094	0/0:114:114,0:114:4079:0:0:0,-34.3174,-367.26	0/1:134:64,70:64:2291:70:2484:-183.476,0,-166.113	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/1:325:171,154:171:6073:154:5469:-394.507,0,-448.834	0/0:278:278,0:278:9923:0:0:0,-83.6863,-893	0/0:66:65,1:65:2336:1:36:0,-16.2697,-206.901	0/0:176:176,0:176:6308:0:0:0,-52.9813,-567.812	0/0:186:186,0:186:6611:0:0:0,-55.9916,-595.07	0/1:116:37,79:37:1324:79:2804:-217.682,0,-84.5426	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.42	0/0:82:82,0:82:2913:0:0:0,-24.6845,-262.405	0/1:92:57,35:57:2040:35:1252:-85.2903,0,-156.177	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453	0/1:75:43,32:43:1529:32:1129:-79.3391,0,-115.324	0/0:132:132,0:132:4683:0:0:0,-39.736,-421.63	0/0:235:235,0:235:8375:0:0:0,-70.742,-753.755	0/0:217:217,0:217:7734:0:0:0,-65.3235,-696.048	0/0:167:162,5:162:5805:5:165:0,-35.0984,-507.386	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:136:62,74:62:2232:74:2612:-194.39,0,-160.203	0/1:197:109,88:109:3885:88:3136:-223.162,0,-290.539	0/0:173:172,1:172:6160:1:36:0,-48.4799,-550.9	0/1:101:47,54:47:1688:54:1920:-142.673,0,-121.803	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/1:118:51,67:51:1827:67:2392:-180.016,0,-129.189	0/0:152:152,0:152:5418:0:0:0,-45.7566,-487.749	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:83:41,42:41:1476:42:1484:-108.869,0,-108.151	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/1:56:27,29:27:972:29:1036:-76.6962,0,-70.9393	0/1:126:59,67:59:2109:67:2379:-176.438,0,-152.147	0/1:95:32,63:32:1152:63:2232:-172.547,0,-75.3923	0/0:150:150,0:150:5365:0:0:0,-45.1545,-482.981	0/0:121:121,0:121:4352:0:0:0,-36.4246,-391.853
chr08	300005	.	C	T	212078	PASS	AB=0.500636;ABP=3.02688;AC=152;AF=0.808511;AN=188;AO=9561;CIGAR=1X;DP=11933;DPB=11933;DPRA=0;EPP=19837;EPPR=4843.37;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.978;MQMR=59.9827;NS=94;NUMALT=1;ODDS=4.13423;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=342604;QR=84571;RO=2367;RPL=9453;RPP=19837;RPPR=4843.37;RPR=108;RUN=1;SAF=9561;SAP=20764.5;SAR=0;SRF=2367;SRP=5142.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:13,11:13:464:11:396:-28.758,0,-34.8728	1/1:178:0,178:0:0:178:6373:-573.655,-53.5833,0	0/1:432:201,231:201:7198:231:8304:-617.319,0,-517.828	0/1:298:144,154:144:5155:154:5516:-406.859,0,-374.383	0/1:87:45,42:45:1612:42:1512:-110.185,0,-119.18	0/1:68:40,28:40:1432:28:1008:-70.564,0,-108.705	1/1:129:0,129:0:0:129:4632:-417.041,-38.8329,0	1/1:217:0,217:0:0:217:7772:-699.51,-65.3235,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0	1/1:74:0,74:0:0:74:2636:-237.485,-22.2762,0	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0	1/1:75:0,75:0:0:75:2668:-240.365,-22.5773,0	1/1:61:0,61:0:0:61:2168:-195.384,-18.3628,0	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0	1/1:113:0,113:0:0:113:4060:-365.586,-34.0164,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:304:0,304:0:0:304:10914:-982.149,-91.5131,0	1/1:163:0,163:0:0:163:5814:-523.373,-49.0679,0	0/1:257:183,74:183:6550:74:2664:-162.64,0,-512.216	1/1:150:0,150:0:0:150:5383:-484.591,-45.1545,0	0/1:61:28,33:28:996:33:1184:-88.5055,0,-71.5921	1/1:60:0,60:0:0:60:2151:-193.857,-18.0618,0	1/1:437:2,435:2:72:435:15582:-1395.24,-124.713,0	0/1:233:106,127:106:3812:127:4545:-339.075,0,-273.133	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:417:2,415:2:72:415:14880:-1332.09,-118.693,0	1/1:196:1,195:1:36:195:7004:-626.817,-55.4036,0	0/1:161:77,84:77:2755:84:3007:-222.395,0,-199.668	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:250:0,250:0:0:250:8966:-806.917,-75.2575,0	0/1:248:120,128:120:4289:128:4589:-338.517,0,-311.531	0/1:93:35,58:35:1237:58:2075:-159.024,0,-83.6365	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:132:61,71:61:2179:71:2548:-189.834,0,-156.64	0/1:50:22,28:22:783:28:1008:-75.9849,0,-55.7414	1/1:214:0,214:0:0:214:7635:-686.989,-64.4204,0	1/1:106:0,106:0:0:106:3766:-339.138,-31.9092,0	1/1:72:0,72:0:0:72:2567:-231.28,-21.6742,0	0/1:91:36,55:36:1292:55:1968:-150.001,0,-89.19	0/1:186:85,101:85:3037:101:3628:-270.73,0,-217.567	0/1:311:149,162:149:5331:162:5819:-430.199,0,-386.303	1/1:100:0,100:0:0:100:3581:-322.495,-30.103,0	1/1:209:2,207:2:72:207:7401:-659.293,-56.0785,0	1/1:155:0,155:0:0:155:5557:-500.251,-46.6597,0	0/1:21:6,15:6:208:15:540:-42.6149,0,-12.7375	0/1:194:78,116:78:2793:116:4154:-315.641,0,-193.208	1/1:48:0,48:0:0:48:1696:-152.923,-14.4494,0	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	1/1:223:0,223:0:0:223:7968:-717.141,-67.1297,0	0/1:45:23,22:23:805:22:788:-57.6984,0,-59.2212	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:20:13,7:13:446:7:252:-17.0084,0,-34.4448	1/1:117:0,117:0:0:117:4163:-374.816,-35.2205,0	0/1:133:69,64:69:2459:64:2296:-166.864,0,-181.527	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:323:152,169:152:5424:169:6065:-449.033,0,-391.373	1/1:278:0,278:0:0:278:9963:-896.598,-83.6863,0	1/1:68:2,66:2:72:66:2372:-206.901,-13.6333,0	1/1:180:0,180:0:0:180:6464:-581.815,-54.1854,0	1/1:187:1,186:1:36:186:6668:-596.597,-52.6943,0	0/1:121:82,38:82:2939:38:1364:-86.5773,0,-228.26	1/1:36:0,36:0:0:36:1296:-116.943,-10.8371,0	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	0/1:91:35,56:35:1241:56:2007:-153.509,0,-84.5988	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	0/1:79:35,43:35:1252:43:1548:-115.773,0,-89.145	1/1:136:0,136:0:0:136:4860:-437.554,-40.9401,0	1/1:236:0,236:0:0:236:8470:-762.298,-71.0431,0	1/1:215:0,214:0:0:214:7624:-685.828,-64.4204,0	1/1:168:5,163:5:176:163:5836:-509.16,-34.388,0	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:141:78,63:78:2788:63:2263:-161.487,0,-208.716	0/1:199:91,108:91:3259:108:3842:-286.066,0,-233.623	1/1:172:1,171:1:36:171:6144:-549.458,-48.1789,0	0/1:105:57,48:57:2009:48:1728:-124.197,0,-149.471	1/1:102:0,102:0:0:102:3664:-329.963,-30.7051,0	0/1:117:68,49:68:2418:49:1748:-122.384,0,-182.655	1/1:154:0,154:0:0:154:5531:-497.912,-46.3586,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:84:41,43:41:1472:43:1544:-113.967,0,-107.49	1/1:93:0,93:0:0:93:3344:-301.176,-27.9958,0	0/1:56:29,27:29:1040:27:968:-70.5788,0,-77.0567	0/1:126:66,60:66:2352:60:2156:-156.377,0,-174.01	0/1:98:64,34:64:2296:34:1224:-80.9661,0,-177.4	1/1:151:0,151:0:0:151:5424:-488.287,-45.4555,0	1/1:123:0,123:0:0:123:4424:-398.329,-37.0267,0
chr08	300065	.	A	G	39021.2	PASS	AB=0.517771;ABP=14.9731;AC=38;AF=0.202128;AN=188;AO=2279;CIGAR=1X;DP=11673;DPB=11673;DPRA=1.16447;EPP=4934.44;EPPR=20319.4;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9978;MQMR=59.996;NS=94;NUMALT=1;ODDS=6.77288;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81561;QR=336634;RO=9392;RPL=4;RPP=4917.11;RPPR=19948.3;RPR=2275;RUN=1;SAF=2;SAP=4934.44;SAR=2277;SRF=43;SRP=20025.7;SRR=9349;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:17,29:17:612:29:1044:-80.4274,0,-41.5661	0/0:191:191,0:191:6849:0:0:0,-57.4967,-616.476	0/1:136:68,68:68:2421:68:2402:-175.496,0,-177.205	0/1:332:173,159:173:6203:159:5688:-412.096,0,-458.423	0/1:104:57,47:57:2048:47:1692:-121.26,0,-153.284	0/1:113:57,56:57:2040:56:2004:-146.617,0,-149.856	0/0:166:166,0:166:5955:0:0:0,-49.971,-536.055	0/0:200:200,0:200:7175:0:0:0,-60.206,-645.803	0/0:109:109,0:109:3907:0:0:0,-32.8123,-351.822	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.518	0/0:66:65,1:65:2332:1:36:0,-16.2697,-206.541	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:85:85,0:85:3047:0:0:0,-25.5875,-274.459	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:98:98,0:98:3515:0:0:0,-29.5009,-316.559	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:320:320,0:320:11472:0:0:0,-96.3296,-1032.35	0/0:181:181,0:181:6481:0:0:0,-54.4864,-583.373	0/1:142:51,91:51:1832:91:3252:-250.155,0,-122.415	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:115:78,37:78:2796:37:1323:-84.7529,0,-217.262	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/0:522:521,1:521:18645:1:36:0,-153.539,-1673.99	0/1:253:128,125:128:4587:125:4492:-328.286,0,-336.833	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.715	0/0:308:308,0:308:11027:0:0:0,-92.7172,-992.32	0/0:184:183,1:183:6557:1:36:0,-51.7912,-586.611	0/1:132:75,57:75:2681:57:2047:-144.766,0,-201.797	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:238:238,0:238:8535:0:0:0,-71.6451,-768.146	0/1:160:90,70:90:3227:70:2512:-178.167,0,-242.486	0/1:84:45,39:45:1620:39:1388:-99.9318,0,-120.795	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:201:104,97:104:3736:97:3480:-252.904,0,-275.932	0/1:39:19,20:19:680:20:716:-53.0275,0,-49.789	0/0:203:203,0:203:7283:0:0:0,-61.1091,-655.519	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:82:81,1:81:2896:1:36:0,-21.0862,-257.278	0/1:128:61,67:61:2196:67:2396:-177.365,0,-159.373	0/1:151:74,77:74:2660:77:2760:-203.186,0,-194.19	0/1:270:125,145:125:4468:145:5192:-386.141,0,-321.01	0/0:175:175,0:175:6275:0:0:0,-52.6802,-564.842	0/0:173:173,0:173:6220:0:0:0,-52.0782,-559.893	0/0:208:205,3:205:7364:3:108:0,-52.5391,-652.729	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:180:92,88:92:3312:88:3160:-230.439,0,-244.112	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/1:24:3,21:3:108:21:752:-60.7815,0,-2.85045	0/0:151:151,0:151:5424:0:0:0,-45.4555,-488.287	0/1:56:31,25:31:1103:25:883:-62.9298,0,-82.7221	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:23:7,16:7:248:16:576:-45.2513,0,-15.7405	0/0:114:114,0:114:4056:0:0:0,-34.3174,-365.227	0/1:143:58,85:58:2084:85:3043:-231.052,0,-144.783	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:337:166,171:166:5936:171:6134:-450.711,0,-432.899	0/0:237:234,2:234:8364:2:72:0,-64.4856,-745.968	0/0:105:99,6:99:3552:6:216:0,-11.8176,-300.097	0/0:123:123,0:123:4393:0:0:0,-37.0267,-395.542	0/0:200:199,1:199:7134:1:36:0,-56.6077,-638.517	0/1:103:31,72:31:1100:72:2580:-201.443,0,-68.3042	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:78:77,0:77:2764:0:0:0,-23.1793,-248.789	0/1:105:54,51:54:1931:51:1810:-131.572,0,-142.458	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/0:152:152,0:152:5448:0:0:0,-45.7566,-490.448	0/1:96:45,51:45:1620:51:1806:-133.921,0,-117.191	0/0:194:194,0:194:6948:0:0:0,-58.3998,-625.385	0/0:206:206,0:206:7377:0:0:0,-62.0122,-663.975	0/0:154:154,0:154:5509:0:0:0,-46.3586,-495.935	0/0:144:144,0:144:5176:0:0:0,-43.3483,-465.978	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:192:83,109:83:2984:109:3906:-293.935,0,-210.994	0/1:160:65,95:65:2323:95:3392:-257.328,0,-161.165	0/0:226:225,1:225:8080:1:36:0,-64.4345,-723.594	0/1:133:54,79:54:1924:79:2812:-213.281,0,-133.4	0/0:86:85,1:85:3052:1:36:0,-22.2903,-271.311	0/1:107:52,55:52:1872:55:1970:-145.365,0,-136.549	0/0:190:190,0:190:6809:0:0:0,-57.1957,-612.878	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:79:39,40:39:1391:40:1429:-105.126,0,-101.707	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/1:42:23,19:23:828:19:684:-49.2471,0,-62.2009	0/1:85:42,43:42:1508:43:1544:-113.666,0,-110.427	0/1:68:28,40:28:1008:40:1432:-108.708,0,-70.5663	0/0:148:148,0:148:5312:0:0:0,-44.5524,-478.213	0/0:125:125,0:125:4496:0:0:0,-37.6287,-404.806
chr08	329306	.	G	T	139021	PASS	AB=0.53246;ABP=78.4295;AC=44;AF=0.234043;AN=188;AO=5841;CIGAR=1X;DP=20896;DPB=20896;DPRA=2.31894;EPP=1971.35;EPPR=2291.13;GTI=3;LEN=1;MEANALT=1.07692;MQM=59.9795;MQMR=59.9978;NS=94;NUMALT=1;ODDS=2.79687;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209145;QR=538253;RO=15048;RPL=1770;RPP=1971.35;RPPR=2291.13;RPR=4071;RUN=1;SAF=0;SAP=12686.6;SAR=5841;SRF=0;SRP=32679.3;SRR=15048;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:10,41:10:356:41:1472:-117.424,0,-17.0287	0/0:161:161,0:161:5764:0:0:0,-48.4658,-518.875	0/1:145:41,104:41:1476:104:3732:-292.431,0,-89.4868	0/1:205:70,135:70:2511:135:4837:-373.771,0,-164.53	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:105:105,0:105:3743:0:0:0,-31.6081,-337.071	0/0:147:147,0:147:5276:0:0:0,-44.2514,-474.974	0/0:73:72,1:72:2588:1:36:0,-18.3769,-229.57	0/0:132:132,0:132:4717:0:0:0,-39.736,-424.688	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:35:35,0:35:1242:0:0:0,-10.536,-112.083	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7675	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:130:130,0:130:4680:0:0:0,-39.1339,-421.358	1/1:77:5,72:5:180:72:2584:-216.257,-6.62725,0	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:133:66,67:66:2354:67:2408:-176.939,0,-172.081	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:332:332,0:332:11879:0:0:0,-99.942,-1068.97	0/1:225:107,118:107:3819:118:4213:-311.618,0,-276.176	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:227:227,0:227:8128:0:0:0,-68.3338,-731.536	0/0:385:371,14:371:13276:14:504:0,-70.1985,-1148.94	0/1:63:18,45:18:640:45:1576:-123.162,0,-38.9644	1/1:527:7,520:7:252:520:18611:-1651.53,-135.614,0	0/0:1296:1293,3:1293:46212:3:108:0,-380.06,-4147.42	1/1:612:1,611:1:36:611:21834:-1960.89,-180.632,0	0/0:1806:1806,0:1806:64500:0:0:0,-543.66,-5802.65	0/0:1344:1336,5:1336:47783:5:172:0,-388.211,-4283	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:88:15,73:15:527:73:2612:-208.837,0,-21.2695	0/1:239:104,135:104:3708:135:4851:-364.792,0,-261.974	0/0:316:315,1:315:11285:1:36:0,-91.5272,-1011.93	0/1:84:24,60:24:860:60:2142:-167.761,0,-52.4353	0/1:82:10,72:10:360:72:2584:-208.124,0,-8.05984	0/0:106:105,1:105:3748:1:36:0,-28.3109,-333.923	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:114:58,56:58:2062:56:2003:-146.225,0,-151.532	0/1:87:14,73:14:504:73:2620:-209.858,0,-19.5085	0/1:218:114,104:114:4054:104:3711:-268.566,0,-299.424	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:97:97,0:97:3473:0:0:0,-29.1999,-312.78	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:1115:554,561:554:19819:561:20026:-1465.71,0,-1447.58	0/1:109:26,83:26:932:83:2961:-233.91,0,-51.3866	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:678:337,340:337:12078:340:12177:-891.576,0,-882.709	0/0:101:101,0:101:3619:0:0:0,-30.404,-325.915	0/1:35:7,28:7:252:28:1008:-80.5003,0,-12.4929	0/0:563:562,1:562:20087:1:36:0,-165.882,-1803.75	0/1:1083:565,517:565:20242:517:18523:-1340.57,0,-1495.21	0/0:90:89,1:89:3161:1:36:0,-23.4944,-281.117	0/1:62:37,25:37:1328:25:900:-62.6572,0,-101.158	0/0:550:548,2:548:19584:2:72:0,-158.73,-1755.26	0/1:135:122,13:122:4376:13:468:-1.8206,0,-353.374	0/0:133:132,1:132:4731:1:36:0,-36.4387,-422.349	0/1:60:53,7:53:1904:7:252:-4.96716,0,-153.576	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:234:234,0:234:8376:0:0:0,-70.441,-753.846	0/1:129:16,113:16:576:113:4064:-327.112,0,-13.3421	0/0:253:252,1:252:9035:1:36:0,-72.5623,-809.527	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:39:24,15:24:864:15:536:-36.8346,0,-66.3424	0/0:273:272,1:272:9738:1:36:0,-78.5829,-872.768	0/0:176:175,0:175:6284:0:0:0,-52.6802,-565.291	0/1:77:47,30:47:1684:30:1068:-73.2528,0,-128.668	0/0:234:234,0:234:8311:0:0:0,-70.441,-747.872	0/0:174:172,2:172:6168:2:72:0,-45.5425,-548.38	0/0:121:121,0:121:4334:0:0:0,-36.4246,-390.234	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/1:1889:927,962:927:33141:962:34485:-2533.89,0,-2413.01	0/1:130:74,56:74:2640:56:2004:-141.5,0,-198.713	0/1:79:21,58:21:747:58:2046:-160.628,0,-43.7729	0/0:257:256,1:256:9132:1:36:0,-73.7664,-818.258	0/1:44:24,20:24:852:20:720:-51.8835,0,-63.7551	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:24:7,17:7:252:17:608:-47.8273,0,-15.8042	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:51:16,35:16:576:35:1260:-98.353,0,-36.8225	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	1/1:185:12,173:12:432:173:6209:-519.681,-16.4694,0	0/1:708:323,384:323:11543:384:13808:-1029.3,0,-825.551	0/1:60:19,41:19:684:41:1472:-114.714,0,-43.8285	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947
chr08	366727	.	C	T	238169	PASS	AB=0.542995;ABP=96.186;AC=150;AF=0.797872;AN=188;AO=11144;CIGAR=1X;DP=13828;DPB=13828;DPRA=0;EPP=24201.9;EPPR=5820.38;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9954;MQMR=59.994;NS=94;NUMALT=1;ODDS=3.36152;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=397176;QR=94084;RO=2679;RPL=11144;RPP=24201.9;RPPR=5820.38;RPR=0;RUN=1;SAF=11144;SAP=24201.9;SAR=0;SRF=2679;SRP=5820.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:110:54,56:54:1928:56:2012:-148.24,0,-140.683	1/1:180:0,180:0:0:180:6432:-578.969,-54.1854,0	0/1:213:107,104:107:3812:104:3728:-271.842,0,-279.402	0/1:361:155,206:155:5444:206:7322:-550.361,0,-381.422	0/1:168:79,89:79:2771:89:3171:-235.042,0,-199.05	0/1:142:53,89:53:1888:89:3176:-243.319,0,-127.452	1/1:236:0,236:0:0:236:8410:-756.906,-71.0431,0	1/1:218:0,218:0:0:218:7780:-700.234,-65.6245,0	1/1:180:0,180:0:0:180:6428:-578.61,-54.1854,0	1/1:163:0,163:0:0:163:5800:-522.116,-49.0679,0	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	1/1:52:1,51:1:36:51:1820:-160.483,-12.0553,0	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	1/1:34:0,34:0:0:34:1186:-107.043,-10.235,0	1/1:64:0,64:0:0:64:2281:-205.55,-19.2659,0	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:359:0,359:0:0:359:12802:-1152,-108.07,0	1/1:236:0,236:0:0:236:8425:-758.255,-71.0431,0	0/1:223:142,81:142:4960:81:2886:-192.846,0,-379.426	1/1:147:0,147:0:0:147:5267:-474.165,-44.2514,0	0/1:249:89,160:89:3117:160:5697:-437.893,0,-205.801	1/1:195:0,195:0:0:195:6912:-622.154,-58.7009,0	0/1:626:273,353:273:9513:353:12578:-943.41,0,-667.704	0/1:287:146,141:146:5120:141:5048:-368.07,0,-374.554	1/1:21:0,21:0:0:21:738:-66.7414,-6.32163,0	1/1:521:0,521:0:0:521:18581:-1671.87,-156.837,0	1/1:223:4,218:4:135:218:7771:-686.943,-54.6696,0	0/1:246:96,150:96:3375:150:5336:-406.322,0,-229.914	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:167:2,165:2:72:165:5863:-520.947,-43.4353,0	0/1:323:166,157:166:5846:157:5624:-409.048,0,-429.025	0/1:27:6,21:6:212:21:752:-59.8784,0,-11.297	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:240:115,125:115:4065:125:4479:-331.031,0,-293.793	0/1:32:14,18:14:466:18:639:-48.2053,0,-32.6229	1/1:206:0,206:0:0:206:7342:-660.83,-62.0122,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:48:0,48:0:0:48:1699:-153.195,-14.4494,0	0/1:246:112,134:112:3925:134:4745:-353.156,0,-279.393	0/1:238:108,130:108:3848:130:4648:-346.838,0,-274.865	0/1:287:144,143:144:4956:143:5090:-371.85,0,-359.801	1/1:222:0,222:0:0:222:7863:-707.703,-66.8287,0	1/1:180:0,180:0:0:180:6451:-580.675,-54.1854,0	1/1:414:1,413:1:32:413:14727:-1321.97,-121.427,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:190:86,104:86:3072:104:3708:-276.728,0,-219.513	1/1:101:0,101:0:0:101:3615:-325.555,-30.404,0	0/1:13:8,5:8:284:5:176:-12.2716,0,-21.99	1/1:226:0,226:0:0:226:8049:-724.433,-68.0328,0	0/1:140:57,83:57:1995:83:2900:-219.091,0,-137.677	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:36:22,14:22:760:14:487:-33.3221,0,-57.8788	1/1:113:1,112:1:36:112:3986:-355.333,-30.4181,0	0/1:60:28,32:28:982:32:1135:-84.3963,0,-70.6299	1/1:6:0,6:0:0:6:192:-17.5934,-1.80618,0	0/1:272:84,188:84:2948:188:6688:-520.119,0,-183.672	1/1:266:1,265:1:36:265:9482:-849.74,-76.4757,0	1/1:103:4,99:4:136:99:3539:-306.143,-18.4306,0	1/1:164:0,164:0:0:164:5829:-524.726,-49.3689,0	1/1:352:8,344:8:288:344:12191:-1070.55,-79.6952,0	0/1:177:105,72:105:3674:72:2559:-177.278,0,-277.582	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:168:0,167:0:0:167:5976:-537.587,-50.272,0	0/1:84:35,49:35:1203:49:1708:-128.716,0,-83.2825	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:235:2,233:2:68:233:8340:-744.15,-64.2843,0	0/1:80:31,49:31:1092:49:1760:-134.601,0,-74.5072	1/1:238:0,238:0:0:238:8504:-765.36,-71.6451,0	1/1:277:0,277:0:0:277:9816:-883.392,-83.3853,0	1/1:224:0,224:0:0:224:8016:-721.461,-67.4307,0	1/1:164:5,159:5:180:159:5708:-497.284,-32.8169,0	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	0/1:181:90,91:90:3147:91:3264:-239.493,0,-228.969	0/1:185:88,97:88:3144:97:3476:-257.091,0,-227.496	1/1:362:1,361:1:36:361:12820:-1150.03,-105.375,0	0/1:87:31,56:31:1087:56:2004:-154.444,0,-71.9488	1/1:59:0,59:0:0:59:2094:-188.729,-17.7608,0	0/1:71:36,35:36:1252:35:1248:-91.2517,0,-91.6061	1/1:93:0,93:0:0:93:3313:-298.388,-27.9958,0	1/1:43:0,43:0:0:43:1528:-137.813,-12.9443,0	0/1:41:18,23:18:644:23:820:-61.7803,0,-45.9484	1/1:58:0,58:0:0:58:2056:-185.312,-17.4597,0	0/1:19:8,11:8:280:11:396:-30.2632,0,-19.8197	0/1:44:12,31:12:420:31:1116:-87.4862,0,-24.8675	0/1:51:31,20:31:1087:20:720:-49.7762,0,-82.7859	1/1:218:0,218:0:0:218:7761:-698.522,-65.6245,0	1/1:67:0,67:0:0:67:2391:-215.447,-20.169,0
chr08	367974	.	C	T	67553	PASS	AB=0.623926;ABP=204.837;AC=59;AF=0.31383;AN=188;AO=2569;CIGAR=1X;DP=5988;DPB=5988;DPRA=1.78915;EPP=5581.52;EPPR=7401.22;GTI=15;LEN=1;MEANALT=1.11905;MQM=59.2207;MQMR=59.7652;NS=94;NUMALT=1;ODDS=0.0724767;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91937;QR=121717;RO=3407;RPL=1646;RPP=444.852;RPPR=7401.22;RPR=923;RUN=1;SAF=923;SAP=444.852;SAR=1646;SRF=0;SRP=7401.22;SRR=3407;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1656:-149.29,-13.8474,0	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	1/1:67:1,65:1:36:65:2332:-206.483,-16.6295,0	1/1:143:7,136:7:252:136:4849:-413.393,-20.0183,0	0/1:73:8,61:8:288:61:2184:-175.605,0,-5.13651	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.244	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.533	0/0:83:83,0:83:2973:0:0:0,-24.9855,-267.776	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.4822	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5319	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.359	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5389	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:107:107,0:107:3833:0:0:0,-32.2102,-345.156	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.323	1/1:136:2,134:2:72:134:4812:-426.32,-34.1034,0	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:117:29,86:29:1040:86:3042:-238.998,0,-58.9434	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.758	0/1:302:134,168:134:4781:168:5981:-447.359,0,-339.528	0/1:278:91,187:91:3230:187:6712:-520.263,0,-207.225	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:132:132,0:132:4744:0:0:0,-39.736,-427.065	0/0:138:127,11:127:4530:11:396:0,-5.55939,-371.855	1/1:142:0,142:0:0:142:5069:-456.332,-42.7463,0	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5642	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	1/1:161:3,158:3:108:158:5642:-497.381,-38.3907,0	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:114:0,114:0:0:114:4088:-368.016,-34.3174,0	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.713	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.4212	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.387	0/1:150:53,97:53:1908:97:3473:-267.391,0,-126.842	1/1:94:2,92:2:72:92:3304:-290.705,-21.4601,0	0/1:203:93,110:93:3313:110:3948:-293.691,0,-237.274	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.335	0/0:50:50,0:50:1766:0:0:0,-15.0515,-159.21	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/1:7:5,2:5:180:2:72:-4.72909,0,-14.4449	1/1:100:0,100:0:0:100:3581:-322.437,-30.103,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:13:2,11:2:72:11:396:-32.069,0,-2.92333	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.694	1/1:48:1,47:1:36:47:1680:-147.881,-10.8512,0	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/1:23:8,15:8:288:15:536:-41.6419,0,-19.3437	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4695	1/1:44:0,43:0:0:43:1548:-139.145,-12.9443,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:152:0,152:0:0:152:5429:-488.444,-45.7566,0	0/0:82:79,3:79:2832:3:108:0,-14.6117,-245.036	0/1:31:25,6:25:885:6:216:-10.4586,0,-70.6346	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.4794	0/0:143:142,0:142:5077:0:0:0,-42.7463,-456.603	1/1:135:1,134:1:36:134:4801:-428.474,-37.0408,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	1/1:23:0,23:0:0:23:809:-73.0535,-6.92369,0	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9342	0/0:175:174,1:174:6240:1:36:0,-49.2926,-558.151	1/1:56:0,55:0:0:55:1976:-177.229,-16.5567,0	0/0:145:145,0:145:5170:0:0:0,-43.6493,-465.346	0/0:161:160,0:160:5733:0:0:0,-48.1648,-515.697	0/0:171:170,0:170:6028:0:0:0,-51.1751,-542.224	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.757	0/1:20:12,8:12:417:8:288:-20.2325,0,-31.8396	0/1:151:62,89:62:2220:89:3204:-242.994,0,-154.599	1/1:106:1,105:1:36:105:3760:-334.919,-28.32,0	0/0:163:163,0:163:5829:0:0:0,-49.0679,-524.656	0/1:17:2,15:2:72:15:540:-43.724,0,-1.71921	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6153	0/1:14:2,12:2:72:12:432:-35.0023,0,-2.6223	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	1/1:18:0,18:0:0:18:648:-58.616,-5.41854,0	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.413	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:41:15,26:15:536:26:928:-71.496,0,-36.2326	0/1:39:11,28:11:381:28:989:-77.5716,0,-22.8781	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.703	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.745
chr08	398742	.	G	A	25722	PASS	AB=0.553538;ABP=70.2069;AC=39;AF=0.211957;AN=184;AO=1510;CIGAR=1X;DP=6318;DPB=6318;DPRA=1.17215;EPP=3281.93;EPPR=10415.2;GTI=2;LEN=1;MEANALT=1;MQM=59.9894;MQMR=59.9856;NS=92;NUMALT=1;ODDS=0.815023;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53760;QR=168207;RO=4807;RPL=0;RPP=3281.93;RPPR=10415.2;RPR=1510;RUN=1;SAF=0;SAP=3281.93;SAR=1510;SRF=0;SRP=10441.3;SRR=4807;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:20,13:20:703:13:446:-30.5324,0,-53.6595	0/0:87:86,1:86:2999:1:36:0,-22.5913,-266.543	0/1:67:31,36:31:1079:36:1288:-96.0546,0,-77.2459	0/1:107:53,54:53:1877:54:1917:-140.595,0,-136.997	0/1:41:25,16:25:884:16:576:-39.8328,0,-67.5361	0/1:47:24,23:24:848:23:807:-58.8008,0,-62.4912	0/0:78:78,0:78:2750:0:0:0,-23.4803,-247.743	0/0:125:125,0:125:4359:0:0:0,-37.6287,-392.486	0/0:71:71,0:71:2463:0:0:0,-21.3731,-221.919	0/0:83:83,0:83:2911:0:0:0,-24.9855,-262.226	0/0:61:60,0:60:2097:0:0:0,-18.0618,-188.639	0/0:66:66,0:66:2298:0:0:0,-19.868,-207.08	0/0:50:50,0:50:1709:0:0:0,-15.0515,-154.09	0/0:90:90,0:90:3141:0:0:0,-27.0927,-282.917	0/0:45:45,0:45:1564:0:0:0,-13.5463,-141.048	0/0:40:40,0:40:1380:0:0:0,-12.0412,-124.491	0/0:90:90,0:90:3133:0:0:0,-27.0927,-282.201	0/0:57:56,1:56:1936:1:36:0,-13.5604,-170.916	0/0:33:33,0:33:1141:0:0:0,-9.93399,-102.993	0/0:67:67,0:67:2368:0:0:0,-20.169,-213.377	0/0:69:69,0:69:2407:0:0:0,-20.7711,-216.883	0/1:37:4,33:4:140:33:1175:-94.9188,0,-1.80647	0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6803	0/1:86:47,39:47:1633:39:1396:-100.051,0,-121.365	0/0:44:44,0:44:1549:0:0:0,-13.2453,-139.7	0/1:237:108,129:108:3836:129:4582:-341.201,0,-274.092	0/1:118:51,67:51:1781:67:2404:-181.095,0,-125.046	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:84:84,0:84:2970:0:0:0,-25.2865,-267.531	0/0:152:146,6:146:5169:6:216:0,-25.966,-445.557	0/1:96:37,59:37:1257:59:2098:-160.19,0,-84.5233	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:151:151,0:151:5237:0:0:0,-45.4555,-471.478	0/1:208:90,118:90:3153:118:4191:-314.753,0,-221.382	0/1:75:32,43:32:1099:43:1540:-116.316,0,-76.6353	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:97:47,50:47:1671:50:1781:-131.372,0,-121.477	0/1:16:9,7:9:307:7:252:-18.2125,0,-23.1438	0/0:81:80,1:80:2818:1:36:0,-20.7852,-250.26	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/0:45:45,0:45:1579:0:0:0,-13.5463,-142.4	0/1:59:27,32:27:964:32:1140:-85.1484,0,-69.3161	0/1:101:40,61:40:1383:61:2167:-164.889,0,-94.3593	0/1:134:59,75:59:2080:75:2664:-199.667,0,-147.044	0/0:59:59,0:59:2067:0:0:0,-17.7608,-186.298	0/0:88:88,0:88:3105:0:0:0,-26.4906,-279.676	0/0:98:98,0:98:3458:0:0:0,-29.5009,-311.43	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:95:46,49:46:1622:49:1756:-129.726,0,-117.67	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:77:77,0:77:2732:0:0:0,-23.1793,-246.122	0/1:11:2,9:2:72:9:312:-25.104,0,-3.52539	.:.:.:.:.:.:.:.	0/1:16:4,12:4:120:12:432:-34.4047,0,-6.28008	0/0:64:64,0:64:2257:0:0:0,-19.2659,-203.392	0/1:148:77,71:77:2674:71:2528:-183.218,0,-196.351	.:.:.:.:.:.:.:.	0/1:114:54,60:54:1909:60:2121:-156.837,0,-137.679	0/0:142:141,1:141:4998:1:36:0,-39.148,-446.371	0/0:90:86,4:86:2976:4:144:0,-13.7791,-254.756	0/0:38:38,0:38:1299:0:0:0,-11.4391,-117.16	0/0:52:52,0:52:1828:0:0:0,-15.6536,-164.798	0/1:58:12,46:12:410:46:1652:-131.509,0,-19.7668	0/0:32:31,1:31:1081:1:36:0,-6.03468,-93.9983	0/0:55:55,0:55:1898:0:0:0,-16.5566,-171.092	0/1:85:52,33:52:1794:33:1163:-79.3886,0,-136.148	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:93:93,0:93:3188:0:0:0,-27.9958,-287.142	0/1:69:22,47:22:762:47:1688:-131.436,0,-48.124	0/0:127:127,0:127:4449:0:0:0,-38.2308,-400.584	0/0:83:83,0:83:2932:0:0:0,-24.9855,-264.114	0/0:115:115,0:115:4034:0:0:0,-34.6184,-363.25	0/0:100:100,0:100:3499:0:0:0,-30.103,-315.119	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:59:27,32:27:928:32:1152:-86.2294,0,-66.0684	0/1:55:23,32:23:790:32:1143:-86.622,0,-54.8558	0/0:112:112,0:112:3966:0:0:0,-33.7154,-357.131	0/1:124:50,74:50:1762:74:2646:-201.059,0,-121.534	0/0:72:72,0:72:2507:0:0:0,-21.6742,-225.883	0/1:60:25,35:25:874:35:1243:-94.1121,0,-60.9134	0/0:114:114,0:114:4035:0:0:0,-34.3174,-363.339	0/0:29:29,0:29:996:0:0:0,-8.72987,-89.9467	0/1:56:23,33:23:788:33:1174:-89.1091,0,-54.3757	0/0:70:70,0:70:2397:0:0:0,-21.0721,-215.984	0/1:47:21,26:21:715:26:936:-70.4111,0,-50.5154	0/1:79:32,47:32:1107:47:1649:-124.914,0,-76.1518	0/1:37:16,21:16:572:21:733:-55.1516,0,-40.6753	0/0:35:35,0:35:1203:0:0:0,-10.536,-108.569	0/0:85:85,0:85:2976:0:0:0,-25.5875,-268.072
chr08	399446	.	G	A	44340.6	PASS	AB=0.47999;ABP=17.6095;AC=38;AF=0.204301;AN=186;AO=2028;CIGAR=1X;DP=11036;DPB=11036;DPRA=1.34516;EPP=4406.76;EPPR=19561.5;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.9463;MQMR=59.8934;NS=93;NUMALT=1;ODDS=3.37312;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72344;QR=320698;RO=9007;RPL=644;RPP=589.351;RPPR=2719.93;RPR=1384;RUN=1;SAF=644;SAP=589.351;SAR=1384;SRF=2825;SRP=2719.93;SRR=6182;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:20,17:20:705:17:588:-42.1041,0,-52.6347	0/0:82:81,1:81:2881:1:36:0,-21.0862,-255.915	0/1:118:63,55:63:2239:55:1972:-141.743,0,-166.252	0/1:394:215,179:215:7656:179:6386:-456.225,0,-570.468	0/1:47:34,13:34:1196:13:468:-28.3112,0,-93.7942	0/1:39:19,20:19:684:20:716:-53.0275,0,-50.1502	0/0:184:184,0:184:6584:0:0:0,-55.3895,-592.639	0/0:112:112,0:112:3994:0:0:0,-33.7154,-359.628	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:113:113,0:113:4032:0:0:0,-34.0164,-363.065	0/0:114:114,0:114:4033:0:0:0,-34.3174,-362.441	0/0:119:118,1:118:4199:1:36:0,-32.2243,-374.492	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.879	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.132	0/0:154:154,0:154:5486:0:0:0,-46.3586,-493.865	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.045	0/0:34:34,0:34:1186:0:0:0,-10.235,-107.041	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:239:239,0:239:8499:0:0:0,-71.9462,-764.823	0/0:171:171,0:171:6077:0:0:0,-51.4761,-546.93	0/1:178:61,117:61:2173:117:4177:-322.529,0,-142.251	0/0:203:203,0:203:7240:0:0:0,-61.1091,-651.636	0/1:61:44,17:44:1580:17:612:-37.0506,0,-124.129	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.006	0/1:368:210,158:210:7460:158:5622:-395.323,0,-560.618	0/1:149:87,62:87:3092:62:2220:-155.211,0,-233.653	0/0:25:25,0:25:878:0:0:0,-7.52575,-79.334	0/0:445:443,1:443:15741:1:36:0,-130.419,-1412.76	0/0:116:113,3:113:4046:3:108:0,-24.8443,-354.222	0/1:185:104,81:104:3691:81:2903:-205.815,0,-276.7	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:373:0:0:0,-3.31133,-33.8952	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:423:423,0:423:15043:0:0:0,-127.336,-1353.58	0/1:71:41,30:41:1458:30:1076:-75.7797,0,-110.141	0/1:42:18,24:18:644:24:856:-64.7178,0,-45.6473	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:122:52,70:52:1864:70:2495:-187.582,0,-131.314	0/1:22:8,14:8:288:14:500:-38.7135,0,-19.6447	0/0:144:144,0:144:5126:0:0:0,-43.3483,-461.473	0/0:133:133,0:133:4739:0:0:0,-40.037,-426.666	0/0:144:144,0:144:5140:0:0:0,-43.3483,-462.739	0/1:154:85,69:85:3019:69:2455:-174.846,0,-225.581	0/1:91:45,46:45:1601:46:1644:-120.855,0,-116.984	0/1:281:164,117:164:5840:117:4177:-291.523,0,-441.095	0/0:176:175,1:175:6210:1:36:0,-49.383,-555.363	0/0:209:209,0:209:7468:0:0:0,-62.9153,-672.161	0/0:171:171,0:171:6069:0:0:0,-51.4761,-546.312	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:65:36,29:36:1292:29:1025:-72.9937,0,-97.0168	0/0:99:99,0:99:3511:0:0:0,-29.802,-316.199	0/1:4:1,3:1:36:3:91:-7.28715,0,-2.39415	0/0:135:135,0:135:4763:0:0:0,-40.639,-428.774	0/1:76:38,38:38:1360:38:1352:-99.1021,0,-99.8223	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0271	0/1:17:11,6:11:388:6:212:-14.3073,0,-30.1399	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:211:100,111:100:3561:111:3941:-291.36,0,-257.176	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.0553	0/1:300:154,146:154:5483:146:5230:-380.524,0,-403.288	0/0:294:293,1:293:10468:1:32:0,-85.3035,-938.736	0/1:79:71,8:71:2517:8:288:-2.48604,0,-202.995	0/0:149:149,0:149:5255:0:0:0,-44.8535,-473.085	0/0:223:222,1:222:7890:1:36:0,-63.5314,-706.527	0/1:196:101,95:101:3597:95:3392:-246.494,0,-264.932	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9612	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:80:38,42:38:1360:42:1496:-110.852,0,-98.6182	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0007	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/1:46:16,30:16:572:30:1080:-83.6613,0,-37.966	0/0:140:140,0:140:4973:0:0:0,-42.1442,-447.15	0/0:236:236,0:236:8390:0:0:0,-71.0431,-755.025	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.478	0/0:93:93,0:93:3331:0:0:0,-27.9958,-300.007	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:121:71,50:71:2540:50:1781:-124.147,0,-192.42	0/1:95:43,52:43:1544:52:1849:-138.091,0,-110.655	0/0:304:303,1:303:10795:1:36:0,-87.9148,-967.853	0/1:121:57,64:57:2040:64:2258:-166.898,0,-146.813	0/0:144:144,0:144:5145:0:0:0,-43.3483,-463.185	0/1:97:48,49:48:1712:49:1748:-128.404,0,-125.164	0/0:313:312,1:312:11134:1:36:0,-90.6241,-998.314	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:74:30,44:30:1059:44:1580:-120.215,0,-73.3442	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.933	0/1:21:10,11:10:356:11:392:-29.2984,0,-26.0596	0/1:58:23,35:23:815:35:1258:-96.0658,0,-56.211	0/1:174:62,112:62:2203:112:4004:-308.171,0,-146.156	0/0:199:199,0:199:7091:0:0:0,-59.905,-638.165	0/0:207:207,0:207:7378:0:0:0,-62.3132,-664.052
chr08	399491	.	T	A	133787	PASS	AB=0.526262;ABP=20.5746;AC=148;AF=0.795699;AN=186;AO=6164;CIGAR=1X;DP=7562;DPB=7562;DPRA=41.087;EPP=13388;EPPR=3034.39;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.9564;MQMR=59.9491;NS=93;NUMALT=1;ODDS=2.91862;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220835;QR=50011;RO=1396;RPL=6164;RPP=13388;RPPR=3034.39;RPR=0;RUN=1;SAF=0;SAP=13388;SAR=6164;SRF=0;SRP=3034.39;SRR=1396;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:18,19:18:640:19:684:-50.7522,0,-46.7912	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	0/1:118:55,63:55:1968:63:2264:-168.501,0,-141.383	0/1:243:86,157:86:3080:157:5604:-431.334,0,-204.278	0/1:48:14,34:14:504:34:1224:-96.0176,0,-31.2487	0/1:39:20,19:20:716:19:680:-49.789,0,-53.0275	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:113:0,113:0:0:113:4052:-364.844,-34.0164,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:73:0,73:0:0:73:2600:-234.249,-21.9752,0	1/1:37:0,37:0:0:37:1328:-119.734,-11.1381,0	1/1:118:1,117:1:36:117:4196:-374.222,-31.9233,0	1/1:76:0,76:0:0:76:2727:-245.671,-22.8783,0	1/1:38:1,37:1:36:37:1328:-116.219,-7.84087,0	1/1:87:0,87:0:0:87:3124:-281.385,-26.1896,0	1/1:60:0,60:0:0:60:2137:-192.594,-18.0618,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:176:0,176:0:0:176:6300:-567.091,-52.9813,0	1/1:166:0,166:0:0:166:5944:-534.962,-49.971,0	0/1:107:77,30:77:2760:30:1080:-65.303,0,-216.431	1/1:116:0,116:0:0:116:4164:-374.94,-34.9195,0	0/1:61:17,44:17:612:44:1580:-124.129,0,-37.0506	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:214:95,119:95:3408:119:4272:-320.236,0,-242.513	0/1:149:64,85:64:2296:85:3048:-229.696,0,-162.048	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:284:0,284:0:0:284:10169:-915.137,-85.4925,0	1/1:115:2,113:2:72:113:4048:-357.664,-27.7817,0	0/1:99:46,53:46:1648:53:1892:-140.756,0,-118.807	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:219:0,219:0:0:219:7876:-708.86,-65.9256,0	0/1:70:30,40:30:1080:40:1432:-108.105,0,-76.4412	0/1:42:24,18:24:864:18:644:-45.6473,0,-65.4393	1/1:3:0,3:0:0:3:91:-8.491,-0.90309,0	0/1:128:73,54:73:2605:54:1936:-135.926,0,-195.617	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6511	1/1:142:0,141:0:0:141:5064:-455.532,-42.4452,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	0/1:74:35,39:35:1244:39:1400:-104.023,0,-89.9884	0/1:94:47,47:47:1677:47:1676:-122.83,0,-122.918	0/1:152:67,85:67:2396:85:3044:-228.433,0,-170.141	1/1:87:0,87:0:0:87:3104:-279.588,-26.1896,0	1/1:126:0,126:0:0:126:4528:-407.683,-37.9298,0	1/1:84:0,84:0:0:84:3004:-270.592,-25.2865,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:68:31,37:31:1112:37:1328:-99.3522,0,-79.9213	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:134:0,134:0:0:134:4792:-431.408,-40.338,0	0/1:35:18,17:18:644:17:593:-43.1587,0,-47.7545	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:71:0,71:0:0:71:2528:-227.772,-21.3731,0	0/1:83:49,34:49:1756:34:1216:-84.7609,0,-133.339	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:190:89,101:89:3165:101:3624:-269.169,0,-227.871	1/1:189:1,188:1:36:188:6736:-602.679,-53.2964,0	0/1:79:8,71:8:288:71:2544:-205.425,0,-2.48604	1/1:93:0,93:0:0:93:3323:-299.288,-27.9958,0	1/1:133:1,132:1:36:132:4728:-422.078,-36.4387,0	0/1:126:62,64:62:2228:64:2285:-167.98,0,-162.854	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:66:0,66:0:0:66:2364:-212.889,-19.868,0	0/1:46:26,20:26:928:20:720:-51.281,0,-69.9909	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:51:0,51:0:0:51:1827:-164.711,-15.3525,0	0/1:44:28,16:28:1008:16:576:-38.9297,0,-77.791	1/1:133:0,133:0:0:133:4744:-427.116,-40.037,0	1/1:136:0,136:0:0:136:4884:-439.708,-40.9401,0	1/1:71:0,71:0:0:71:2544:-229.166,-21.3731,0	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:117:47,70:47:1692:70:2511:-191.016,0,-117.346	0/1:96:52,44:52:1864:44:1580:-113.593,0,-139.141	1/1:173:0,173:0:0:173:6204:-558.455,-52.0782,0	0/1:55:23,32:23:824:32:1148:-87.0722,0,-57.9267	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	0/1:52:23,29:23:828:29:1025:-76.9071,0,-59.1906	1/1:144:0,144:0:0:144:5168:-465.257,-43.3483,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:73:45,28:45:1612:28:992:-67.6192,0,-123.395	1/1:72:0,72:0:0:72:2583:-232.673,-21.6742,0	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/1:57:35,22:35:1260:22:784:-53.7252,0,-96.5468	0/1:78:50,28:50:1800:28:1000:-66.835,0,-138.802	1/1:117:0,117:0:0:117:4200:-378.094,-35.2205,0	1/1:102:0,102:0:0:102:3656:-329.243,-30.7051,0
chr08	400178	.	A	T	118070	PASS	AB=0.461058;ABP=51.5482;AC=146;AF=0.776596;AN=188;AO=5626;CIGAR=1X;DP=8279;DPB=8279;DPRA=8.08211;EPP=12219.7;EPPR=5763.93;GTI=6;LEN=1;MEANALT=1;MQM=60;MQMR=59.9789;NS=94;NUMALT=1;ODDS=1.42624;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201065;QR=94223;RO=2653;RPL=32;RPP=11943.3;RPPR=5677.4;RPR=5594;RUN=1;SAF=5594;SAP=11943.3;SAR=32;SRF=2643;SRP=5677.4;SRR=10;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:32,5:32:1148:5:176:-5.04691,0,-92.4917	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	0/1:85:68,17:68:2444:17:612:-29.8259,0,-194.627	0/1:79:38,41:38:1364:41:1460:-107.915,0,-99.2793	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	1/1:53:1,52:1:36:52:1860:-164.081,-12.3563,0	1/1:122:0,122:0:0:122:4353:-391.944,-36.7257,0	1/1:67:0,67:0:0:67:2388:-215.178,-20.169,0	1/1:33:2,31:2:72:31:1104:-92.8339,-3.09727,0	1/1:30:1,29:1:36:29:1028:-89.2348,-5.43263,0	1/1:44:2,42:2:72:42:1504:-128.818,-6.4086,0	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:91:3,88:3:108:88:3144:-273.111,-17.3186,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	0/1:28:24,4:24:845:4:144:-4.88478,0,-67.9383	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:126:66,60:66:2357:60:2121:-153.228,0,-174.457	0/1:78:35,43:35:1252:43:1544:-115.773,0,-89.5047	1/1:18:1,17:1:36:17:612:-51.8152,-1.82027,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	1/1:129:4,125:4:144:125:4422:-384.84,-25.5193,0	0/1:24:18,6:18:644:6:216:-12.5658,0,-51.0659	0/0:312:306,6:306:10846:6:216:0,-74.1308,-956.098	1/1:117:2,115:2:72:115:4120:-364.147,-28.3838,0	0/0:136:134,2:134:4722:2:72:0,-34.1034,-418.307	1/1:187:0,187:0:0:187:6665:-599.93,-56.2926,0	1/1:159:0,159:0:0:159:5680:-511.32,-47.8638,0	1/1:122:3,119:3:108:119:4249:-372.515,-26.6505,0	0/1:51:34,17:34:1212:17:608:-39.6995,0,-94.0338	0/1:209:101,108:101:3569:108:3876:-286.119,0,-258.505	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:82:51,31:51:1832:31:1112:-75.7069,0,-140.476	0/1:93:75,18:75:2582:18:648:-30.6561,0,-204.627	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:37:1,36:1:36:36:1283:-112.174,-7.53984,0	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	0/1:83:41,42:41:1460:42:1508:-111.029,0,-106.711	0/1:43:31,12:31:1116:12:432:-26.2769,0,-87.8074	0/1:85:45,40:45:1593:40:1436:-103.95,0,-118.071	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	0/1:386:230,156:230:8171:156:5561:-384.417,0,-619.21	0/1:60:43,17:43:1521:17:612:-37.3516,0,-119.119	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:333:172,161:172:6003:161:5744:-416.836,0,-440.121	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	1/1:193:2,191:2:72:191:6781:-603.532,-51.2621,0	0/1:448:244,204:244:8744:204:7281:-520.481,0,-651.958	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:54:27,27:27:972:27:964:-70.8212,0,-71.5423	1/1:280:2,278:2:72:278:9948:-888.423,-77.4517,0	1/1:76:6,70:6:216:70:2508:-206.182,-3.08777,0	1/1:83:0,83:0:0:83:2972:-267.713,-24.9855,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:90:1,89:1:36:89:3180:-282.826,-23.4944,0	0/0:78:72,6:72:2569:6:216:0,-3.68983,-211.668	1/1:315:4,311:4:144:311:11128:-988.097,-81.5108,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:39:18,21:18:644:21:748:-55.9051,0,-46.5504	1/1:159:3,156:3:108:156:5596:-493.686,-37.7886,0	1/1:46:1,45:1:36:45:1600:-140.692,-10.2491,0	0/1:71:41,30:41:1472:30:1076:-75.7797,0,-111.403	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:53:1,52:1:36:52:1843:-162.551,-12.3563,0	0/1:397:151,246:151:5323:246:8836:-675.713,0,-359.699	0/1:75:47,28:47:1676:28:996:-67.3776,0,-128.55	0/1:53:33,20:33:1180:20:712:-48.4521,0,-90.5535	1/1:96:0,96:0:0:96:3421:-308.103,-28.8989,0	0/1:29:16,13:16:561:13:468:-33.7298,0,-42.0873	1/1:35:1,34:1:36:34:1216:-106.148,-6.93778,0	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	1/1:80:0,80:0:0:80:2860:-257.638,-24.0824,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:44:20,24:20:716:24:864:-64.8372,0,-51.5224	1/1:59:1,58:1:36:58:2068:-182.793,-14.1625,0	0/0:110:100,10:100:3539:10:360:0,-0.368997,-285.972	0/1:461:210,251:210:7498:251:8980:-669.406,0,-536.086	0/1:52:33,19:33:1168:19:665:-44.5192,0,-89.7737	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:75:2,73:2:72:73:2620:-229.211,-15.7405,0
chr08	400268	.	A	T	22710.7	PASS	AB=0.599718;ABP=187.066;AC=38;AF=0.202128;AN=188;AO=1292;CIGAR=1X;DP=5719;DPB=5719;DPRA=1.03006;EPP=2808.55;EPPR=9505.61;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.9598;MQMR=60;NS=94;NUMALT=1;ODDS=0.294417;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46281;QR=158119;RO=4420;RPL=1292;RPP=2808.55;RPPR=9505.61;RPR=0;RUN=1;SAF=0;SAP=2808.55;SAR=1292;SRF=0;SRP=9600.92;SRR=4420;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:6,12:6:207:12:428:-32.496,0,-13.5484	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:51:19,32:19:684:32:1135:-87.1055,0,-46.5378	0/1:162:48,114:48:1720:114:4075:-318.17,0,-106.319	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:28:3,25:3:108:25:896:-72.5315,0,-1.64633	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.113	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/0:56:55,0:55:1964:0:0:0,-16.5566,-176.675	0/0:76:76,0:76:2706:0:0:0,-22.8783,-243.783	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/0:97:96,0:96:3444:0:0:0,-28.8989,-309.813	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:81:81,0:81:2889:0:0:0,-24.3834,-260.245	0/0:107:107,0:107:3820:0:0:0,-32.2102,-343.998	0/1:25:6,19:6:212:19:684:-54.3646,0,-11.899	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/1:76:37,39:37:1316:39:1400:-103.421,0,-95.8635	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/1:177:69,108:69:2472:108:3880:-296.111,0,-169.451	0/1:103:50,52:50:1796:52:1868:-137.334,0,-130.857	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:185:185,0:185:6652:0:0:0,-55.6905,-598.754	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:86:29,57:29:1032:57:2048:-158.703,0,-67.3049	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:159:159,0:159:5699:0:0:0,-47.8638,-513.026	0/1:50:19,31:19:680:31:1112:-85.2701,0,-46.4777	0/1:41:12,29:12:419:29:1044:-81.9326,0,-25.7004	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:82:36,46:36:1296:46:1656:-124.644,0,-92.2595	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/0:73:72,1:72:2572:1:36:0,-18.3769,-228.132	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:64:27,37:27:951:37:1321:-99.9257,0,-66.6384	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:120:59,61:59:2094:61:2181:-160.431,0,-152.605	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:94:93,1:93:3340:1:36:0,-24.6985,-297.218	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/1:11:5,6:5:180:6:208:-15.7472,0,-13.2407	0/1:59:14,45:14:500:45:1605:-126.978,0,-27.5754	0/0:68:66,0:66:2364:0:0:0,-19.868,-212.659	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.914	0/1:35:6,29:6:212:29:1029:-82.3851,0,-8.88875	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:17:5,12:5:180:12:428:-33.7413,0,-11.4346	0/0:79:78,1:78:2796:1:36:0,-20.1831,-248.282	0/1:80:44,36:44:1584:36:1296:-92.8615,0,-118.769	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:69:53,16:53:1908:16:572:-31.0424,0,-151.226	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:47:45,2:45:1620:2:72:0,-7.31169,-139.253	0/0:37:37,0:37:1287:0:0:0,-11.1381,-116.127	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/1:61:20,41:20:716:41:1456:-112.973,0,-46.4049	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:42:11,31:11:396:31:1112:-87.7481,0,-23.3395	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:69:67,2:67:2412:2:72:0,-13.9343,-210.499	0/1:52:23,29:23:820:29:1044:-78.6212,0,-58.469	0/0:155:155,0:155:5528:0:0:0,-46.6596,-497.645	0/0:155:154,1:154:5512:1:36:0,-43.0614,-492.608	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.613	0/0:96:93,3:93:3322:3:108:0,-18.8237,-289.122	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:80:46,34:46:1648:34:1216:-85.6642,0,-124.526	0/1:78:21,57:21:748:57:2044:-160.751,0,-44.165	0/0:205:205,0:205:7336:0:0:0,-61.7111,-660.287	0/1:66:21,45:21:756:45:1616:-125.862,0,-48.4992	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:58:15,43:15:536:43:1547:-122.063,0,-31.1151	0/0:97:94,3:94:3376:3:108:0,-19.1247,-293.98	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:66:27,38:27:963:38:1364:-103.222,0,-67.1459	0/0:64:63,0:63:2260:0:0:0,-18.9649,-203.303	0/1:46:19,27:19:684:27:960:-72.8683,0,-48.0429	0/1:97:49,48:49:1756:48:1720:-125.886,0,-129.124	0/1:58:15,43:15:536:43:1540:-121.433,0,-31.1151	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:71:71,0:71:2530:0:0:0,-21.3731,-227.951
chr08	418577	.	A	C	103782	PASS	AB=0.399743;ABP=207.217;AC=142;AF=0.78022;AN=182;AO=3838;CIGAR=1X;DP=5260;DPB=5260;DPRA=11.7978;EPP=103.767;EPPR=20.847;GTI=2;LEN=1;MEANALT=1.02247;MQM=59.6928;MQMR=59.9972;NS=91;NUMALT=1;ODDS=0.0463282;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137146;QR=50892;RO=1420;RPL=2130;RPP=103.767;RPPR=20.847;RPR=1708;RUN=1;SAF=0;SAP=8337.12;SAR=3838;SRF=0;SRP=3086.5;SRR=1420;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:9,2:9:315:2:72:-3.5168,0,-25.3759	1/1:72:0,72:0:0:72:2572:-231.656,-21.6742,0	0/1:57:29,28:29:1044:28:1008:-73.6873,0,-77.1161	0/1:111:72,39:72:2566:39:1396:-92.5166,0,-197.775	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:35:21,14:21:752:14:502:-34.976,0,-57.4702	1/1:98:0,98:0:0:98:3492:-314.212,-29.5009,0	1/1:75:0,75:0:0:75:2678:-241.238,-22.5773,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:121:0,121:0:0:121:4340:-390.745,-36.4246,0	1/1:31:0,31:0:0:31:1108:-100.025,-9.33193,0	1/1:42:0,42:0:0:42:1508:-135.959,-12.6433,0	1/1:38:0,38:0:0:38:1334:-120.356,-11.4391,0	1/1:63:0,63:0:0:63:2248:-202.561,-18.9649,0	1/1:44:0,44:0:0:44:1571:-141.663,-13.2453,0	1/1:31:0,31:0:0:31:1103:-99.579,-9.33193,0	1/1:70:0,70:0:0:70:2499:-225.154,-21.0721,0	1/1:53:1,52:1:36:52:1858:-163.879,-12.3563,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:55:0,55:0:0:55:1980:-178.47,-16.5567,0	1/1:71:0,71:0:0:71:2511:-226.19,-21.3731,0	0/1:72:61,11:61:2188:11:396:-14.3086,0,-175.512	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:53:38,15:38:1368:15:540:-32.9773,0,-107.466	1/1:14:0,14:0:0:14:504:-45.6931,-4.21442,0	0/1:252:162,90:162:5796:90:3224:-214.477,0,-445.892	0/1:93:64,29:64:2300:29:1040:-65.9186,0,-179.265	1/1:33:0,33:0:0:33:1165:-105.146,-9.93399,0	1/1:133:0,133:0:0:133:4757:-428.282,-40.037,0	0/1:59:10,49:10:360:49:1756:-140.553,0,-14.9835	0/1:61:36,25:36:1292:25:883:-61.4164,0,-98.2209	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	1/1:141:0,141:0:0:141:5050:-454.637,-42.4452,0	0/1:107:61,46:61:2179:46:1652:-116.648,0,-164.165	0/1:35:16,19:16:576:19:671:-50.1765,0,-41.6389	.:.:.:.:.:.:.:.	0/1:86:50,36:50:1787:36:1288:-90.3286,0,-135.223	0/1:36:18,18:18:644:18:633:-46.458,0,-47.4535	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:44:0,44:0:0:44:1566:-141.228,-13.2453,0	1/1:38:0,38:0:0:38:1368:-123.416,-11.4391,0	0/1:44:33,11:33:1184:11:396:-22.7374,0,-93.623	0/1:72:47,25:47:1692:25:888:-58.5649,0,-130.893	0/1:70:59,11:59:2116:11:388:-14.1796,0,-169.637	1/1:67:0,67:0:0:67:2391:-215.356,-20.169,0	1/1:100:0,99:0:0:99:3524:-316.974,-29.802,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:62:42,20:42:1500:20:716:-46.0875,0,-116.631	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	1/1:65:0,65:0:0:65:2317:-208.783,-19.567,0	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	.:.:.:.:.:.:.:.	0/1:16:12,4:12:432:4:140:-8.1281,0,-34.4047	1/1:34:0,34:0:0:34:1224:-110.462,-10.235,0	0/1:90:42,48:42:1512:48:1704:-126.471,0,-109.282	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:259:132,127:132:4719:127:4560:-332.517,0,-346.903	1/1:70:0,70:0:0:70:2489:-224.245,-21.0721,0	1/1:44:0,44:0:0:44:1572:-141.767,-13.2453,0	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	1/1:68:0,68:0:0:68:2402:-216.379,-20.47,0	0/1:87:58,29:58:2084:29:1040:-67.7248,0,-161.64	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:48:0,48:0:0:48:1708:-153.949,-14.4494,0	1/1:75:0,75:0:0:75:2681:-241.531,-22.5773,0	1/1:21:0,21:0:0:21:740:-66.9108,-6.32163,0	1/1:52:0,52:0:0:52:1872:-168.722,-15.6536,0	0/1:68:31,37:31:1112:37:1328:-99.3522,0,-79.9213	1/1:75:0,75:0:0:75:2654:-239.065,-22.5773,0	1/1:97:0,97:0:0:97:3472:-312.684,-29.1999,0	1/1:24:0,24:0:0:24:856:-77.3447,-7.22472,0	1/1:120:4,116:4:144:116:4147:-360.043,-22.81,0	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/1:77:46,31:46:1638:31:1116:-77.5678,0,-124.528	0/1:44:28,16:28:1004:16:561:-37.5634,0,-77.4305	1/1:88:0,88:0:0:88:3154:-284.069,-26.4906,0	0/1:77:44,33:44:1580:33:1188:-84.0493,0,-119.312	1/1:39:0,39:0:0:39:1391:-125.481,-11.7402,0	0/1:55:26,28:26:932:28:1004:-74.1472,0,-67.67	1/1:99:0,99:0:0:99:3548:-319.476,-29.802,0	1/1:20:0,20:0:0:20:720:-65.1124,-6.0206,0	0/1:54:33,21:33:1188:21:741:-50.7526,0,-90.973	1/1:26:0,26:0:0:26:918:-82.9353,-7.82678,0	0/1:18:8,10:8:288:10:351:-26.5081,0,-20.8489	0/1:74:47,27:47:1692:27:972:-65.5171,0,-130.291	0/1:47:38,9:38:1368:9:324:-15.3574,0,-109.272	1/1:108:2,106:2:72:106:3804:-335.714,-25.6745,0	1/1:60:0,60:0:0:60:2156:-194.3,-18.0618,0
chr08	418599	.	GTG	GTA	81748	PASS	AB=0.397214;ABP=220.404;AC=142;AF=0.78022;AN=182;AO=3862;CIGAR=2M1X;DP=5307;DPB=5312.67;DPRA=11.9034;EPP=8389.24;EPPR=3132.1;GTI=3;LEN=1;MEANALT=1.04494;MQM=59.688;MQMR=59.9785;NS=91;NUMALT=1;ODDS=0.299299;PAIRED=0;PAIREDR=0;PAO=9;PQA=322;PQR=322;PRO=9;QA=138349;QR=50745;RO=1441;RPL=3862;RPP=8389.24;RPPR=3132.1;RPR=0;RUN=1;SAF=0;SAP=8389.24;SAR=3862;SRF=0;SRP=3132.1;SRR=1441;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:9,2:9:311:2:67:-3.04877,0,-25.0126	1/1:71:0,71:0:0:71:2537:-228.294,-21.3731,0	0/1:58:29,29:29:1029:29:1044:-76.5666,0,-75.2741	0/1:112:73,38:73:2593:38:1364:-89.2279,0,-199.787	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:36:22,14:22:777:14:500:-34.4909,0,-59.4144	1/1:100:0,100:0:0:100:3561:-320.36,-30.103,0	1/1:77:0,77:0:0:77:2760:-248.612,-23.1793,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:122:0,122:0:0:122:4365:-392.993,-36.7257,0	1/1:32:0,32:0:0:32:1144:-103.262,-9.63296,0	1/1:44:0,44:0:0:44:1567:-141.264,-13.2453,0	1/1:39:0,39:0:0:39:1400:-126.291,-11.7402,0	1/1:61:0,61:0:0:61:2192:-197.523,-18.3628,0	1/1:44:0,44:0:0:44:1575:-142.023,-13.2453,0	1/1:33:0,33:0:0:33:1188:-107.224,-9.93399,0	1/1:71:0,71:0:0:71:2548:-229.562,-21.3731,0	1/1:55:1,54:1:36:54:1911:-168.63,-12.9584,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:57:0,57:0:0:57:2029:-182.878,-17.1587,0	1/1:73:0,73:0:0:73:2616:-235.549,-21.9752,0	0/1:72:61,11:61:2131:11:396:-14.3086,0,-170.38	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:55:40,15:40:1423:15:536:-32.0135,0,-111.811	1/1:14:0,14:0:0:14:504:-45.6931,-4.21442,0	0/1:253:164,89:164:5720:89:3192:-211.305,0,-438.765	0/1:95:64,31:64:2286:31:1116:-72.1538,0,-177.405	1/1:33:0,33:0:0:33:1179:-106.408,-9.93399,0	1/1:135:0,135:0:0:135:4852:-436.826,-40.6391,0	0/1:60:10,50:10:346:50:1796:-143.85,0,-13.4106	0/1:63:36,26:36:1285:26:932:-65.1761,0,-96.9312	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:1:1,0:1:34:0:0:0,-0.30103,-3.39891	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	1/1:143:1,142:1:36:142:5108:-456.256,-39.449,0	0/1:109:63,46:63:2197:46:1652:-115.928,0,-165.064	0/1:34:16,18:16:574:18:648:-48.4087,0,-41.7593	.:.:.:.:.:.:.:.	0/1:88:52,36:52:1824:36:1292:-90.0839,0,-137.95	0/1:36:18,18:18:639:18:644:-47.4535,0,-47.0017	1/1:38:0,38:0:0:38:1349:-121.707,-11.4391,0	1/1:46:0,46:0:0:46:1630:-146.986,-13.8474,0	1/1:38:0,38:0:0:38:1364:-123.056,-11.4391,0	0/1:43:30,13:30:1048:13:468:-29.3487,0,-81.51	0/1:71:47,24:47:1655:24:856:-55.988,0,-127.863	0/1:71:60,11:60:2127:11:396:-14.6025,0,-170.326	1/1:68:0,68:0:0:68:2421:-218.054,-20.47,0	1/1:102:0,102:0:0:102:3649:-328.573,-30.7051,0	1/1:56:0,56:0:0:56:2016:-181.646,-16.8577,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:62:43,19:43:1515:19:684:-43.039,0,-117.801	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:18:8,10:8:283:10:360:-27.3258,0,-20.3937	1/1:65:0,65:0:0:65:2328:-209.772,-19.567,0	0/1:11:5,6:5:165:6:216:-16.4792,0,-11.8637	.:.:.:.:.:.:.:.	0/1:16:12,4:12:428:4:144:-8.49714,0,-34.0425	1/1:35:0,35:0:0:35:1252:-112.98,-10.5361,0	0/1:90:42,47:42:1500:47:1680:-124.035,0,-108.143	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:265:133,132:133:4687:132:4712:-344.283,0,-342.222	1/1:63:0,63:0:0:63:2252:-202.636,-18.9649,0	1/1:44:0,44:0:0:44:1584:-142.842,-13.2453,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:68:0,68:0:0:68:2432:-219.031,-20.47,0	0/1:85:59,26:59:2037:26:932:-58.6113,0,-158.013	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:46:0,46:0:0:46:1644:-148.158,-13.8474,0	1/1:75:0,75:0:0:75:2692:-242.521,-22.5773,0	1/1:21:0,21:0:0:21:744:-67.2549,-6.32163,0	1/1:52:0,51:0:0:51:1832:-164.772,-15.3525,0	0/1:69:32,37:32:1118:37:1332:-99.4113,0,-80.155	1/1:74:0,74:0:0:74:2656:-239.24,-22.2762,0	1/1:95:0,95:0:0:95:3420:-308.003,-28.5979,0	1/1:24:0,24:0:0:24:860:-77.7055,-7.22472,0	1/1:121:4,117:4:144:117:4180:-363.039,-23.111,0	0/1:18:13,5:13:461:5:176:-10.7665,0,-36.4074	0/1:77:46,31:46:1618:31:1112:-77.2074,0,-122.728	0/1:45:28,17:28:990:17:600:-40.7609,0,-75.8683	1/1:87:0,87:0:0:87:3113:-280.376,-26.1896,0	0/1:82:48,34:48:1684:34:1220:-85.4223,0,-127.161	1/1:41:0,41:0:0:41:1472:-132.704,-12.3422,0	0/1:55:27,28:27:962:28:1004:-74.1192,0,-70.3394	1/1:99:0,99:0:0:99:3544:-319.146,-29.802,0	1/1:20:0,20:0:0:20:720:-65.1124,-6.0206,0	0/1:55:35,20:35:1228:20:720:-48.5688,0,-94.2653	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:20:10,10:10:353:10:360:-26.7237,0,-26.0886	0/1:76:47,29:47:1662:29:1040:-71.0291,0,-126.988	0/1:47:38,9:38:1335:9:324:-15.3574,0,-106.299	1/1:106:0,106:0:0:106:3804:-342.551,-31.9092,0	1/1:60:0,60:0:0:60:2156:-194.3,-18.0618,0
chr08	434956	.	C	A	44294.2	PASS	AB=0.509032;ABP=6.6973;AC=36;AF=0.193548;AN=186;AO=2665;CIGAR=1X;DP=13575;DPB=13575;DPRA=1.31755;EPP=5746.64;EPPR=23453.3;GTI=1;LEN=1;MEANALT=1.09302;MQM=60;MQMR=59.9999;NS=93;NUMALT=1;ODDS=2.2417;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93977;QR=389998;RO=10903;RPL=2660;RPP=5746.64;RPPR=23470.6;RPR=5;RUN=1;SAF=0;SAP=5789.98;SAR=2665;SRF=2;SRP=23661.2;SRR=10901;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	0/0:179:179,0:179:6390:0:0:0,-53.8844,-575.188	0/1:91:40,51:40:1424:51:1802:-135.065,0,-101.064	0/1:272:124,148:124:4441:148:5220:-388.061,0,-317.979	0/1:62:37,25:37:1319:25:892:-61.9358,0,-100.347	0/1:55:29,26:29:1040:26:916:-66.1998,0,-77.3577	0/0:179:179,0:179:6420:0:0:0,-53.8844,-577.886	0/0:139:139,0:139:4980:0:0:0,-41.8432,-448.348	0/0:152:151,0:151:5408:0:0:0,-45.4555,-486.49	0/0:118:118,0:118:4206:0:0:0,-35.5215,-378.719	0/0:133:133,0:133:4747:0:0:0,-40.037,-427.389	0/0:178:178,0:178:6371:0:0:0,-53.5833,-573.479	0/0:148:148,0:148:5312:0:0:0,-44.5524,-478.213	0/0:202:201,1:201:7151:1:36:0,-57.2098,-640.049	0/0:175:175,0:175:6296:0:0:0,-52.6802,-566.729	0/0:134:134,0:134:4803:0:0:0,-40.338,-432.424	0/0:179:179,0:179:6407:0:0:0,-53.8844,-576.718	0/0:130:129,1:129:4608:1:36:0,-35.5356,-411.284	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.217	0/0:223:223,0:223:7997:0:0:0,-67.1297,-719.747	0/0:248:248,0:248:8896:0:0:0,-74.6554,-800.618	0/1:141:54,87:54:1936:87:2990:-226.884,0,-132.071	0/0:194:193,1:193:6916:1:36:0,-54.8015,-618.908	0/1:129:76,53:76:2713:53:1904:-132.805,0,-205.579	0/0:47:47,0:47:1650:0:0:0,-14.1484,-148.784	0/1:357:188,169:188:6740:169:5959:-428.956,0,-499.205	0/1:181:94,87:94:3364:87:3062:-221.324,0,-248.49	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:192:192,0:192:6814:0:0:0,-57.7978,-613.333	0/0:246:241,5:241:8579:5:176:0,-57.8684,-755.923	0/1:293:143,150:143:5090:150:5319:-390.643,0,-370.042	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:516:514,1:514:18433:1:36:0,-151.792,-1654.95	0/1:210:110,100:110:3948:100:3406:-243.535,0,-292.294	0/1:90:49,41:49:1760:41:1455:-104.153,0,-131.591	.:.:.:.:.:.:.:.	0/1:165:95,70:95:3391:70:2432:-169.461,0,-255.735	0/1:72:38,34:38:1368:34:1201:-86.7195,0,-101.747	0/0:139:139,0:139:4973:0:0:0,-41.8432,-447.717	0/0:246:246,0:246:8832:0:0:0,-74.0534,-794.863	0/0:164:164,0:164:5876:0:0:0,-49.3689,-528.95	0/1:59:30,29:30:1080:29:1024:-74.7118,0,-79.7525	0/1:120:62,58:62:2215:58:2042:-147.925,0,-163.49	0/1:212:95,117:95:3416:117:4096:-305.009,0,-243.834	0/0:139:139,0:139:4976:0:0:0,-41.8432,-447.989	0/0:150:150,0:150:5392:0:0:0,-45.1545,-485.408	0/0:197:197,0:197:7055:0:0:0,-59.3029,-635.01	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:120:65,55:65:2302:55:1972:-141.631,0,-171.314	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	0/0:128:128,0:128:4579:0:0:0,-38.5318,-412.275	0/1:36:20,16:20:716:16:560:-39.8917,0,-53.9306	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:18:7,11:7:244:11:388:-29.8388,0,-16.8809	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/1:479:232,246:232:8309:246:8713:-640.068,0,-603.713	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:282:155,127:155:5537:127:4476:-318.12,0,-413.564	0/0:217:216,0:216:7672:0:0:0,-65.0225,-690.233	0/0:84:84,0:84:2973:0:0:0,-25.2865,-267.803	0/0:89:89,0:89:3164:0:0:0,-26.7917,-284.984	0/0:269:263,6:263:9390:6:216:0,-61.1866,-825.272	0/1:152:63,89:63:2256:89:3116:-234.908,0,-157.546	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.35	0/0:239:239,0:239:8543:0:0:0,-71.9462,-768.867	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2452	0/0:123:123,0:123:4412:0:0:0,-37.0267,-397.251	0/1:75:34,41:34:1207:41:1445:-107.767,0,-86.358	0/0:229:229,0:229:8181:0:0:0,-68.9359,-736.302	0/0:151:151,0:151:5415:0:0:0,-45.4555,-487.478	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:125:125,0:125:4477:0:0:0,-37.6287,-403.097	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:141:58,82:58:2088:82:2924:-221.04,0,-145.833	0/1:133:75,58:75:2688:58:2015:-141.581,0,-202.128	0/0:158:158,0:158:5648:0:0:0,-47.5627,-508.441	0/1:230:112,117:112:4019:117:4149:-304.3,0,-292.601	0/0:146:146,0:146:5223:0:0:0,-43.9504,-470.208	0/1:385:181,204:181:6496:204:7231:-534.951,0,-468.826	0/0:450:449,1:449:16077:1:36:0,-131.865,-1443.01	0/0:95:95,0:95:3401:0:0:0,-28.5978,-306.303	0/1:156:88,68:88:3130:68:2405:-169.743,0,-234.966	0/0:158:158,0:158:5640:0:0:0,-47.5627,-507.72	0/1:83:31,52:31:1108:52:1845:-141.343,0,-75.0455	0/1:115:55,60:55:1976:60:2132:-157.527,0,-143.496	0/1:229:74,155:74:2656:155:5486:-424.93,0,-170.35	0/0:81:80,0:80:2868:0:0:0,-24.0824,-257.997	0/0:245:245,0:245:8740:0:0:0,-73.7523,-786.592
chr08	458658	.	T	C	114788	PASS	AB=0.51312;ABP=7.11267;AC=151;AF=0.803191;AN=188;AO=5444;CIGAR=1X;DP=6795;DPB=6795;DPRA=0;EPP=11824.5;EPPR=2927.98;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9871;MQMR=59.9777;NS=94;NUMALT=1;ODDS=1.00649;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192056;QR=48110;RO=1347;RPL=5444;RPP=11824.5;RPPR=2927.98;RPR=0;RUN=1;SAF=5444;SAP=11824.5;SAR=0;SRF=1347;SRP=2927.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:16,16:16:572:16:572:-42.1805,0,-42.1805	1/1:69:0,69:0:0:69:2459:-221.564,-20.7711,0	0/1:109:54,54:54:1920:54:1892:-137.832,0,-140.353	0/1:148:79,69:79:2818:69:2460:-177.102,0,-209.306	0/1:41:11,30:11:378:30:1063:-83.6386,0,-22.0069	0/1:37:14,23:14:504:23:813:-62.351,0,-34.56	1/1:64:0,64:0:0:64:2259:-203.571,-19.2659,0	1/1:89:0,89:0:0:89:3153:-283.995,-26.7917,0	1/1:98:0,97:0:0:97:3459:-311.311,-29.1999,0	1/1:103:0,103:0:0:103:3610:-325.106,-31.0061,0	1/1:44:0,44:0:0:44:1563:-140.961,-13.2453,0	1/1:34:0,34:0:0:34:1195:-107.855,-10.235,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:69:0,69:0:0:69:2412:-217.337,-20.7711,0	1/1:42:0,42:0:0:42:1450:-130.791,-12.6433,0	1/1:40:0,40:0:0:40:1413:-127.46,-12.0412,0	1/1:47:0,47:0:0:47:1668:-150.407,-14.1484,0	1/1:41:0,41:0:0:41:1435:-129.442,-12.3422,0	1/1:17:0,17:0:0:17:586:-53.0628,-5.11751,0	1/1:139:0,139:0:0:139:4882:-439.488,-41.8432,0	1/1:74:0,74:0:0:74:2613:-235.418,-22.2762,0	0/1:96:53,43:53:1877:43:1536:-109.634,0,-140.308	1/1:44:0,44:0:0:44:1561:-140.78,-13.2453,0	0/1:103:32,71:32:1143:71:2530:-196.944,0,-72.1726	1/1:81:0,81:0:0:81:2867:-258.266,-24.3834,0	0/1:225:94,131:94:3354:131:4640:-350.034,0,-234.344	0/1:133:61,72:61:2184:72:2567:-191.243,0,-156.789	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:214:0,214:0:0:214:7535:-678.199,-64.4204,0	1/1:115:5,110:5:180:110:3904:-334.873,-18.0664,0	0/1:55:33,22:33:1184:22:788:-54.6881,0,-90.3117	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:7:2,5:2:68:5:161:-12.6993,0,-4.3505	1/1:7:0,7:0:0:7:235:-21.4779,-2.10721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:112:1,111:1:36:111:3912:-348.676,-30.1171,0	0/1:173:83,90:83:2976:90:3173:-233.718,0,-215.367	0/1:28:7,21:7:252:21:726:-57.2296,0,-14.6001	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:107:51,56:51:1828:56:1961:-144.551,0,-132.591	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	1/1:116:0,116:0:0:116:4083:-367.657,-34.9195,0	1/1:35:0,35:0:0:35:1227:-110.733,-10.5361,0	1/1:29:0,29:0:0:29:1001:-90.3978,-8.72987,0	0/1:75:34,41:34:1216:41:1423:-105.784,0,-87.1693	0/1:74:32,42:32:1144:42:1488:-111.936,0,-80.9933	0/1:149:69,80:69:2447:80:2823:-209.455,0,-175.632	1/1:124:0,124:0:0:124:4408:-396.892,-37.3277,0	1/1:89:0,88:0:0:88:3110:-279.766,-26.4906,0	1/1:120:0,120:0:0:120:4208:-378.905,-36.1236,0	0/1:11:2,9:2:68:9:324:-26.1945,0,-3.14638	0/1:127:63,64:63:2249:64:2248:-164.351,0,-164.441	1/1:38:0,38:0:0:38:1334:-120.357,-11.4391,0	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	1/1:76:0,76:0:0:76:2615:-235.592,-22.8783,0	0/1:36:17,19:17:612:19:668:-49.6086,0,-44.5764	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	1/1:73:1,72:1:36:72:2534:-224.712,-18.3769,0	0/1:79:31,48:31:1099:48:1700:-129.505,0,-75.4381	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:128:54,74:54:1910:74:2607:-196.345,0,-133.644	1/1:270:0,270:0:0:270:9514:-856.227,-81.2781,0	1/1:61:0,61:0:0:61:2160:-194.665,-18.3628,0	1/1:56:0,56:0:0:56:1975:-178.024,-16.8577,0	1/1:97:0,97:0:0:97:3420:-308.015,-29.1999,0	0/1:199:145,54:145:5208:54:1886:-110.11,0,-408.952	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:74:0,74:0:0:74:2602:-234.427,-22.2762,0	1/1:92:0,92:0:0:92:3235:-291.373,-27.6948,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:99:1,98:1:36:98:3431:-305.407,-26.2037,0	0/1:42:32,10:32:1152:10:356:-19.738,0,-91.3469	1/1:170:0,170:0:0:170:6030:-542.807,-51.1751,0	1/1:105:0,105:0:0:105:3752:-337.881,-31.6082,0	1/1:83:0,83:0:0:83:2921:-263.126,-24.9855,0	1/1:88:1,87:1:36:87:3061:-272.123,-22.8924,0	0/1:28:23,5:23:820:5:172:-7.38913,0,-65.6937	0/1:100:39,61:39:1400:61:2127:-161.591,0,-96.1962	0/1:101:51,50:51:1824:50:1754:-127.736,0,-134.037	1/1:136:2,133:2:72:133:4710:-417.223,-34.1622,0	0/1:59:16,43:16:572:43:1531:-120.322,0,-34.0527	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	0/1:27:10,17:10:360:17:600:-46.2014,0,-24.6165	1/1:101:0,101:0:0:101:3587:-323.039,-30.404,0	1/1:36:0,36:0:0:36:1246:-112.438,-10.8371,0	0/1:54:27,27:27:968:27:968:-71.1817,0,-71.1817	1/1:47:0,47:0:0:47:1633:-147.253,-14.1484,0	0/1:20:11,9:11:388:9:311:-22.3031,0,-29.2368	0/1:49:31,18:31:1108:18:644:-43.5401,0,-85.2805	0/1:33:25,8:25:896:8:276:-15.2413,0,-71.0264	1/1:61:1,60:1:27:60:2107:-187.197,-15.663,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0
chr08	507684	.	T	C	179628	PASS	AB=0.459075;ABP=60.2413;AC=153;AF=0.81383;AN=188;AO=8333;CIGAR=1X;DP=10478;DPB=10478;DPRA=0;EPP=18089.2;EPPR=4645.62;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9242;MQMR=59.9869;NS=94;NUMALT=1;ODDS=1.72918;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=297086;QR=76514;RO=2138;RPL=8333;RPP=18097.9;RPPR=4645.62;RPR=0;RUN=1;SAF=1;SAP=18089.2;SAR=8332;SRF=0;SRP=4645.62;SRR=2138;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:7,12:7:252:12:428:-33.1392,0,-17.3094	1/1:162:2,159:2:72:159:5654:-501.139,-41.9889,0	0/1:138:84,54:84:3000:54:1908:-130.453,0,-228.69	0/1:230:114,116:114:4084:116:4116:-301.386,0,-298.509	0/1:94:44,50:44:1576:50:1764:-130.746,0,-113.835	0/1:44:24,20:24:864:20:703:-50.3467,0,-64.8372	1/1:158:0,158:0:0:158:5632:-507.001,-47.5627,0	1/1:149:0,149:0:0:149:5291:-476.271,-44.8535,0	1/1:73:0,73:0:0:73:2584:-232.809,-21.9752,0	1/1:105:0,105:0:0:105:3749:-337.284,-31.6082,0	1/1:139:0,139:0:0:139:4935:-444.215,-41.8432,0	1/1:87:2,85:2:72:85:3039:-266.902,-19.3529,0	1/1:104:0,104:0:0:104:3719:-334.91,-31.3071,0	1/1:152:0,152:0:0:152:5437:-488.27,-45.7566,0	1/1:79:0,79:0:0:79:2835:-255.388,-23.7814,0	1/1:70:0,70:0:0:70:2492:-224.532,-21.0721,0	1/1:122:0,122:0:0:122:4360:-392.575,-36.7257,0	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	1/1:86:0,86:0:0:86:3072:-276.709,-25.8886,0	1/1:188:0,188:0:0:188:6694:-602.496,-56.5936,0	1/1:172:0,172:0:0:172:6082:-547.465,-51.7772,0	0/1:105:81,24:81:2908:24:851:-45.3021,0,-230.347	1/1:46:1,45:1:36:45:1597:-140.42,-10.2491,0	0/1:80:40,39:40:1436:39:1395:-101.707,0,-105.396	1/1:50:0,50:0:0:50:1784:-160.841,-15.0515,0	0/1:297:163,134:163:5836:134:4804:-343.109,0,-435.946	0/1:232:115,117:115:4132:117:4168:-305.454,0,-302.219	1/1:48:0,48:0:0:48:1677:-151.214,-14.4494,0	1/1:320:1,319:1:36:319:11401:-1022.37,-92.7313,0	1/1:143:2,141:2:72:141:5020:-445.088,-36.2106,0	0/1:115:58,57:58:2065:57:2034:-148.714,0,-151.501	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:8:4,4:4:144:4:139:-10.444,0,-10.9054	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:213:0,213:0:0:213:7566:-680.938,-64.1194,0	0/1:164:102,62:102:3630:62:2220:-150.696,0,-277.534	0/1:138:62,76:62:2228:76:2711:-202.692,0,-159.242	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:193:98,95:98:3452:95:3387:-246.757,0,-252.791	0/1:54:26,28:26:924:28:1004:-74.4202,0,-67.222	1/1:144:0,144:0:0:144:5115:-460.493,-43.3483,0	1/1:97:0,97:0:0:97:3466:-312.152,-29.1999,0	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	0/1:63:33,30:33:1184:30:1076:-78.188,0,-87.9034	0/1:158:80,78:80:2849:78:2792:-203.958,0,-209.084	0/1:171:77,94:77:2749:94:3361:-251.222,0,-196.175	1/1:108:0,106:0:0:106:3792:-341.119,-31.9092,0	1/1:154:0,154:0:0:154:5494:-494.532,-46.3586,0	1/1:185:0,184:0:0:184:6553:-589.491,-55.3895,0	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	0/1:188:97,91:97:3480:91:3255:-236.577,0,-256.817	1/1:68:0,68:0:0:68:2409:-217.043,-20.47,0	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	1/1:189:0,189:0:0:189:6729:-605.674,-56.8947,0	0/1:28:16,12:16:572:12:413:-29.0693,0,-43.3846	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	1/1:84:0,84:0:0:84:2993:-269.602,-25.2865,0	1/1:160:0,160:0:0:160:5707:-513.746,-48.1648,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:139:65,74:65:2325:74:2644:-196.357,0,-167.665	1/1:153:0,153:0:0:153:5436:-489.372,-46.0576,0	1/1:85:0,85:0:0:85:3040:-273.83,-25.5876,0	1/1:130:0,130:0:0:130:4636:-417.405,-39.1339,0	1/1:110:0,110:0:0:110:3926:-353.531,-33.1133,0	0/1:171:122,49:122:4368:49:1748:-106.128,0,-341.761	1/1:83:0,83:0:0:83:2961:-266.723,-24.9855,0	1/1:93:0,93:0:0:93:3323:-299.288,-27.9958,0	1/1:145:0,145:0:0:145:5206:-468.677,-43.6494,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:108:0,107:0:0:107:3823:-343.89,-32.2102,0	0/1:97:45,52:45:1616:52:1842:-136.859,0,-116.53	1/1:145:0,145:0:0:145:5164:-464.265,-43.6494,0	1/1:191:0,191:0:0:191:6835:-615.211,-57.4967,0	1/1:185:0,185:0:0:185:6597:-593.784,-55.6906,0	1/1:107:0,107:0:0:107:3816:-343.639,-32.2102,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:110:1,109:1:36:109:3888:-346.517,-29.515,0	0/1:169:92,77:92:3284:77:2739:-195.879,0,-244.906	1/1:199:2,197:2:72:197:6998:-623.046,-53.0682,0	0/1:140:75,65:75:2688:65:2305:-165.563,0,-200.02	1/1:112:0,112:0:0:112:4012:-361.267,-33.7154,0	0/1:108:69,39:69:2476:39:1396:-93.4279,0,-190.582	1/1:130:0,130:0:0:130:4641:-417.853,-39.1339,0	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	0/1:94:44,50:44:1584:50:1794:-133.432,0,-114.555	1/1:98:0,97:0:0:97:3449:-310.263,-29.1999,0	0/1:136:75,61:75:2696:61:2174:-154.98,0,-201.943	0/1:182:103,79:103:3708:79:2815:-198.801,0,-279.132	0/1:103:68,35:68:2428:35:1243:-81.1678,0,-187.77	1/1:87:0,87:0:0:87:3099:-279.138,-26.1896,0	1/1:114:0,114:0:0:114:4073:-366.729,-34.3174,0
chr08	627634	.	GCTG	GCTC,ACTC	276923	PASS	AB=0.394788,0.600434;ABP=445.774,406.477;AC=150,38;AF=0.797872,0.202128;AN=188;AO=7790,2794;CIGAR=3M1X,1X2M1X;DP=10632;DPB=10633.2;DPRA=23.0913,1.49862;EPP=7862.71,3979.62;EPPR=11.6962;GTI=5;LEN=1,4;MEANALT=1.96739,2.47917;MQM=59.9823,59.9535;MQMR=60;NS=94;NUMALT=2;ODDS=1.19768;PAIRED=0,0;PAIREDR=0;PAO=0,5;PQA=0,172;PQR=0;PRO=0;QA=278117,97177;QR=134;RO=4;RPL=1243,1670;RPP=7844.96,234.703;RPPR=11.6962;RPR=6547,1124;RUN=1,1;SAF=3,1404;SAP=16892.7,3.16263;SAR=7787,1390;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:66:0,38,28:0:0:38,28:1360,943:-187.663,-76.747,-65.3079,-111.261,0,-102.832	1/1:79:0,79,0:0:0:79,0:2836,0:-255.478,-23.7814,0,-255.478,-23.7814,-255.478	1/2:195:0,89,105:0:0:89,105:3183,3605:-552.353,-292.803,-266.011,-259.65,0,-228.042	1/2:270:0,126,142:0:0:126,142:4507,4930:-768.359,-400.867,-362.937,-367.598,0,-324.851	1/2:78:0,9,69:0:0:9,69:324,2419:-223.632,-197.194,-194.485,-26.7966,0,-6.02551	1/2:83:0,27,56:0:0:27,56:972,1942:-237.51,-158.195,-150.067,-79.6701,0,-62.8124	1/1:144:0,144,0:0:0:144,0:5163,0:-464.809,-43.3483,0,-464.809,-43.3483,-464.809	1/1:144:0,143,0:0:0:143,0:5129,0:-461.389,-43.0473,0,-461.389,-43.0473,-461.389	1/1:121:0,120,0:0:0:120,0:4291,0:-386.007,-36.1236,0,-386.007,-36.1236,-386.007	1/1:94:0,94,0:0:0:94,0:3357,0:-302.345,-28.2968,0,-302.345,-28.2968,-302.345	1/1:87:0,87,0:0:0:87,0:3064,0:-275.988,-26.1896,0,-275.988,-26.1896,-275.988	1/1:109:0,109,0:0:0:109,0:3859,0:-347.502,-32.8123,0,-347.502,-32.8123,-347.502	1/1:62:0,62,0:0:0:62,0:2211,0:-199.254,-18.6639,0,-199.254,-18.6639,-199.254	1/1:78:0,78,0:0:0:78,0:2762,0:-248.818,-23.4803,0,-248.818,-23.4803,-248.818	1/1:62:0,62,0:0:0:62,0:2205,0:-198.713,-18.6639,0,-198.713,-18.6639,-198.713	1/1:73:0,73,0:0:0:73,0:2624,0:-236.407,-21.9752,0,-236.407,-21.9752,-236.407	1/1:36:0,36,0:0:0:36,0:1257,0:-113.43,-10.8371,0,-113.43,-10.8371,-113.43	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/1:43:0,42,0:0:0:42,0:1480,0:-133.304,-12.6433,0,-133.304,-12.6433,-133.304	1/1:143:0,140,0:0:0:140,0:4973,0:-447.397,-42.1442,0,-447.397,-42.1442,-447.397	1/1:154:0,154,0:0:0:154,0:5483,0:-493.593,-46.3586,0,-493.593,-46.3586,-493.593	1/2:95:0,40,55:0:0:40,55:1424,1917:-272.311,-156.247,-144.206,-116.416,0,-99.8596	1/1:151:1,148,1:1:36:148,1:5291,36:-472.776,-41.5901,0,-470.14,-41.5901,-472.776	1/2:103:0,25,76:0:0:25,76:877,2637:-285.738,-214.368,-206.842,-71.388,0,-48.5097	1/1:101:0,101,0:0:0:101,0:3598,0:-324.026,-30.404,0,-324.026,-30.404,-324.026	1/2:385:0,158,224:0:0:158,224:5676,7764:-1094.11,-631.066,-583.504,-463.076,0,-395.646	1/2:279:0,116,162:0:0:116,162:4151,5646:-797.682,-459.183,-424.263,-338.533,0,-289.766	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/1:342:0,341,0:0:0:341,0:12216,0:-1099.03,-102.651,0,-1099.03,-102.651,-1099.03	1/1:166:0,161,4:0:0:161,4:5751,144:-517.347,-48.4658,0,-505.597,-36.7162,-504.393	1/2:230:1,99,129:1:36:99,129:3548,4483:-650.579,-361.518,-334.654,-286.418,0,-250.523	2/2:6:0,0,6:0:0:0,6:0,214:-19.6078,-19.6078,-19.6078,-1.80618,-1.80618,0	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	2/2:4:0,0,4:0:0:0,4:0,143:-13.2214,-13.2214,-13.2214,-1.20412,-1.20412,0	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/1:15:0,15,0:0:0:15,0:527,0:-47.7602,-4.51545,0,-47.7602,-4.51545,-47.7602	1/1:182:0,181,0:0:0:181,0:6449,0:-580.188,-54.4864,0,-580.188,-54.4864,-580.188	1/2:112:0,66,46:0:0:66,46:2368,1601:-323.687,-130.529,-110.661,-193.51,0,-179.663	1/2:131:0,24,106:0:0:24,106:864,3717:-372.939,-302.439,-295.215,-70.5076,0,-38.5984	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:154:0,69,85:0:0:69,85:2476,2939:-441.128,-239.159,-218.388,-202.322,0,-176.735	1/2:60:0,16,44:0:0:16,44:567,1542:-172.017,-125.826,-121.009,-46.5442,0,-33.2989	1/1:175:0,174,1:0:0:174,1:6220,29:-559.588,-52.3792,0,-557.28,-49.7806,-556.979	1/1:69:0,69,0:0:0:69,0:2462,0:-221.834,-20.7711,0,-221.834,-20.7711,-221.834	1/1:53:0,53,0:0:0:53,0:1866,0:-168.218,-15.9546,0,-168.218,-15.9546,-168.218	1/2:128:0,62,66:0:0:62,66:2206,2327:-369.609,-189.822,-171.159,-180.141,0,-160.273	1/2:177:0,63,113:0:0:63,113:2240,3887:-498.204,-315.657,-296.692,-182.539,0,-148.523	1/2:183:0,78,104:0:0:78,104:2791,3612:-521.257,-293.661,-270.18,-227.625,0,-196.318	1/1:119:0,118,1:0:0:118,1:4212,36:-378.9,-35.5215,0,-375.963,-32.2243,-375.662	1/1:134:0,133,0:0:0:133,0:4731,0:-425.701,-40.037,0,-425.701,-40.037,-425.701	1/1:88:0,87,0:0:0:87,0:3117,0:-280.504,-26.1896,0,-280.504,-26.1896,-280.504	1/2:15:0,6,9:0:0:6,9:212,297:-41.6165,-24.3418,-22.5356,-17.6186,0,-14.9093	1/2:199:0,97,101:0:0:97,101:3459,3555:-571.36,-289.392,-260.192,-281.963,0,-251.559	1/1:142:0,140,1:0:0:140,1:5015,28:-451.254,-42.1442,0,-449.036,-39.8855,-448.735	1/2:11:0,6,5:0:0:6,5:216,179:-32.5808,-14.9552,-13.1491,-17.9843,0,-16.4792	1/2:168:0,88,80:0:0:88,80:3107,2750:-476.679,-223.661,-197.17,-253.367,0,-229.284	1/2:67:0,16,47:0:0:16,47:559,1637:-178.608,-133.136,-128.319,-45.4874,0,-31.339	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:26:0,11,15:0:0:11,15:392,527:-75.1997,-43.2451,-39.9338,-32.3087,0,-27.7933	1/1:87:0,85,0:0:0:85,0:3039,0:-273.496,-25.5876,0,-273.496,-25.5876,-273.496	1/1:106:0,105,1:0:0:105,1:3738,36:-336.261,-31.6082,0,-333.324,-28.3109,-333.023	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:188:0,95,93:0:0:95,93:3398,3232:-540.194,-263.11,-234.512,-277.437,0,-249.441	1/1:188:1,185,2:1:26:185,2:6618,72:-593.032,-53.685,0,-587.458,-49.7492,-588.894	1/1:99:0,98,0:0:0:98,0:3524,0:-317.008,-29.5009,0,-317.008,-29.5009,-317.008	1/1:91:0,91,0:0:0:91,0:3268,0:-294.34,-27.3937,0,-294.34,-27.3937,-294.34	1/1:226:0,223,2:0:0:223,2:7944,67:-714.648,-67.1297,0,-709.222,-61.7069,-708.62	1/2:149:0,83,66:0:0:83,66:2971,2288:-428.598,-186.313,-161.327,-242.637,0,-222.769	1/1:53:0,53,0:0:0:53,0:1891,0:-170.468,-15.9546,0,-170.468,-15.9546,-170.468	1/1:157:0,156,0:0:0:156,0:5581,0:-502.051,-46.9607,0,-502.051,-46.9607,-502.051	1/1:44:0,44,0:0:0:44,0:1580,0:-142.492,-13.2453,0,-142.492,-13.2453,-142.492	1/1:31:0,31,0:0:0:31,0:1108,0:-100.031,-9.33193,0,-100.031,-9.33193,-100.031	1/1:159:0,159,0:0:0:159,0:5681,0:-511.409,-47.8638,0,-511.409,-47.8638,-511.409	1/2:107:0,44,63:0:0:44,63:1563,2234:-309.091,-182.001,-168.756,-127.085,0,-108.12	1/1:244:0,243,1:0:0:243,1:8720,36:-784.428,-73.1503,0,-781.491,-69.853,-781.19	1/1:177:0,176,0:0:0:176,0:6241,0:-561.548,-52.9813,0,-561.548,-52.9813,-561.548	1/1:104:0,103,0:0:0:103,0:3674,0:-330.503,-31.0061,0,-330.503,-31.0061,-330.503	1/1:115:1,111,3:1:36:111,3:3938,107:-350.999,-30.4761,0,-342.577,-24.6943,-344.611	1/2:14:0,7,7:0:0:7,7:252,247:-41.0315,-20.466,-18.3588,-20.9217,0,-18.8145	1/1:108:0,107,1:0:0:107,1:3797,36:-341.568,-32.2102,0,-338.631,-28.913,-338.33	1/2:138:0,64,73:0:0:64,73:2288,2530:-392.156,-205.593,-186.327,-186.556,0,-164.581	1/1:143:0,142,0:0:0:142,0:5070,0:-456.195,-42.7463,0,-456.195,-42.7463,-456.195	1/2:159:0,34,125:0:0:34,125:1209,4378:-455.083,-356.558,-346.323,-98.8791,0,-61.2504	1/1:61:0,61,0:0:0:61,0:2196,0:-197.905,-18.3628,0,-197.905,-18.3628,-197.905	1/2:96:0,15,81:0:0:15,81:536,2850:-276.059,-232.356,-227.841,-44.0594,0,-19.6759	1/1:130:0,128,1:0:0:128,1:4596,36:-413.497,-38.5318,0,-410.56,-35.5395,-410.259	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:89:0,21,68:0:0:21,68:743,2385:-254.948,-194.43,-188.108,-60.8717,0,-40.4017	1/1:161:0,160,0:0:0:160,0:5700,0:-512.757,-48.1648,0,-512.757,-48.1648,-512.757	1/2:97:0,31,66:0:0:31,66:1116,2335:-281.604,-190.542,-181.21,-91.4198,0,-71.5518	1/2:210:0,79,129:0:0:79,129:2799,4494:-593.555,-365.54,-341.758,-228.1,0,-189.267	1/2:143:0,16,127:0:0:16,127:567,4328:-397.67,-351.478,-346.662,-46.5442,0,-8.31344	1/1:152:0,152,0:0:0:152,0:5433,0:-489.098,-45.7566,0,-489.098,-45.7566,-489.098	1/1:83:0,83,0:0:0:83,0:2978,0:-268.252,-24.9855,0,-268.252,-24.9855,-268.252
chr08	669634	.	G	C	20672.4	PASS	AB=0.453043;ABP=57.4606;AC=36;AF=0.191489;AN=188;AO=1295;CIGAR=1X;DP=7271;DPB=7271;DPRA=1.03816;EPP=2806.39;EPPR=12973.2;GTI=2;LEN=1;MEANALT=1.02564;MQM=59.929;MQMR=60;NS=94;NUMALT=1;ODDS=1.13717;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46117;QR=213556;RO=5973;RPL=0;RPP=2815.07;RPPR=12973.2;RPR=1295;RUN=1;SAF=1294;SAP=2806.39;SAR=1;SRF=5973;SRP=12973.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:41,23:41:1472:23:824:-55.2174,0,-113.51	0/0:56:56,0:56:2007:0:0:0,-16.8577,-180.903	0/1:68:48,20:48:1705:20:720:-44.6587,0,-133.264	0/1:249:151,97:151:5375:97:3445:-235.247,0,-408.864	0/1:41:33,8:33:1184:8:288:-13.9252,0,-94.5261	0/1:46:29,17:29:1044:17:612:-41.5661,0,-80.4274	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.372	0/0:167:167,0:167:5956:0:0:0,-50.272,-536.148	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.747	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:159:159,0:159:5704:0:0:0,-47.8638,-513.476	0/0:146:146,0:146:5183:0:0:0,-43.9504,-466.606	0/1:108:39,69:39:1400:69:2473:-190.311,0,-93.7879	0/0:63:63,0:63:2230:0:0:0,-18.9649,-200.961	0/1:59:31,28:31:1116:28:988:-71.4731,0,-82.9909	0/0:86:85,1:85:3037:1:36:0,-22.2903,-269.96	0/1:192:120,72:120:4259:72:2550:-171.952,0,-325.689	0/1:255:151,104:151:5371:104:3715:-257.773,0,-406.758	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:126:121,5:121:4347:5:180:0,-21.3777,-374.851	0/1:69:31,38:31:1116:38:1350:-100.983,0,-79.9806	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:13:3,10:3:108:10:349:-27.8314,0,-6.16178	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:114:114,0:114:4100:0:0:0,-34.3174,-369.183	0/1:123:77,46:77:2745:46:1625:-109.51,0,-210.264	0/1:35:17,18:17:612:18:640:-47.3933,0,-44.8774	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:77:57,20:57:2052:20:701:-40.2333,0,-161.772	0/1:30:10,20:10:356:20:720:-56.0979,0,-23.3503	0/0:175:175,0:175:6258:0:0:0,-52.6802,-563.312	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:96:50,46:50:1784:46:1632:-118.267,0,-131.944	0/1:92:64,28:64:2289:28:1004:-62.9811,0,-178.575	0/1:142:82,60:82:2918:60:2128:-149.04,0,-220.106	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/0:95:95,0:95:3377:0:0:0,-28.5978,-304.143	0/0:127:127,0:127:4543:0:0:0,-38.2308,-409.036	0/1:20:17,3:17:612:3:108:-4.05457,0,-49.3928	0/1:106:79,27:79:2836:27:961:-54.8961,0,-223.569	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:92:50,42:50:1785:42:1493:-106.969,0,-133.236	0/1:30:4,26:4:129:26:936:-75.5224,0,-2.89676	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:13:9,4:9:305:4:144:-9.40023,0,-23.8638	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.016	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:144:101,43:101:3624:43:1522:-93.9233,0,-283.016	0/0:286:286,0:286:10238:0:0:0,-86.0946,-921.343	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/0:81:81,0:81:2889:0:0:0,-24.3834,-260.245	0/0:123:123,0:123:4330:0:0:0,-37.0267,-389.872	0/1:203:89,114:89:3189:114:4084:-306.637,0,-226.122	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:84:83,0:83:2969:0:0:0,-24.9855,-267.081	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:13:12,0:12:417:0:0:0,-3.61236,-37.5013	0/0:186:186,0:186:6669:0:0:0,-55.9916,-600.284	0/1:56:11,45:11:392:45:1608:-128.152,0,-18.7624	0/0:153:153,0:153:5458:0:0:0,-46.0576,-491.347	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:142:142,0:142:5096:0:0:0,-42.7463,-458.782	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/1:59:30,29:30:1080:29:1020:-74.19,0,-79.7525	0/0:161:161,0:161:5788:0:0:0,-48.4658,-521.031	0/1:51:32,19:32:1148:19:673:-45.5434,0,-88.2773	0/0:28:27,1:27:972:1:36:0,-4.83056,-84.1996	0/1:36:13,23:13:455:23:824:-63.6462,0,-30.4449	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:59:13,46:13:468:46:1637:-129.857,0,-24.6989	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:33:11,22:11:392:22:784:-60.9499,0,-25.6861	0/1:92:31,61:31:1097:61:2168:-167.691,0,-71.3433	0/1:65:13,52:13:464:52:1851:-147.302,0,-22.5306	0/0:140:140,0:140:4982:0:0:0,-42.1442,-448.528	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328
chr08	704845	.	AAGAGAGAAGT	AGGAGAGAAGT,AAGAGAAGT	152297	PASS	AB=0.587023,0.405085;ABP=153.051,181.497;AC=151,37;AF=0.803191,0.196809;AN=188;AO=5993,932;CIGAR=1M1X9M,1M2D8M;DP=6990;DPB=6819.64;DPRA=0,0.969631;EPP=12834.9,2026.82;EPPR=7.35324;GTI=5;LEN=1,2;MEANALT=2.02128,2.45238;MQM=59.9593,59.7017;MQMR=60;NS=94;NUMALT=2;ODDS=0.199884;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=213319,32715;QR=71;RO=2;RPL=21,0;RPP=12834.9,2026.82;RPPR=7.35324;RPR=5972,932;RUN=1,1;SAF=5993,932;SAP=13016.6,2026.82;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/2:13:0,9,4:0:0:9,4:324,129:-37.1862,-10.7235,-8.01427,-26.7966,0,-25.5925	1/1:128:0,128,0:0:0:128,0:4585,0:-412.766,-38.5318,0,-412.766,-38.5318,-412.766	1/2:43:0,30,13:0:0:30,13:1080,430:-123.239,-35.0957,-26.0648,-88.4823,0,-84.569	1/2:118:0,62,56:0:0:62,56:2202,1965:-339.512,-160.217,-141.553,-179.648,0,-162.791	1/2:16:0,11,5:0:0:11,5:381,180:-46.0006,-15.0469,-11.7356,-31.3093,0,-29.8042	1/2:29:0,22,6:0:0:22,6:788,208:-81.1664,-16.895,-10.2723,-64.2624,0,-62.4562	1/1:171:0,170,0:0:0:170,0:6063,0:-545.41,-51.1751,0,-545.41,-51.1751,-545.41	1/1:155:0,154,0:0:0:154,0:5431,0:-488.557,-46.3586,0,-488.557,-46.3586,-488.557	1/1:87:0,87,0:0:0:87,0:3056,0:-275.266,-26.1896,0,-275.266,-26.1896,-275.266	1/1:169:0,163,0:0:0:163,0:5830,0:-524.499,-49.0679,0,-524.499,-49.0679,-524.499	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/1:69:0,68,0:0:0:68,0:2421,0:-217.785,-20.47,0,-217.785,-20.47,-217.785	1/1:46:0,46,0:0:0:46,0:1637,0:-147.617,-13.8474,0,-147.617,-13.8474,-147.617	1/1:34:0,33,0:0:0:33,0:1188,0:-106.869,-9.93399,0,-106.869,-9.93399,-106.869	1/1:43:0,43,0:0:0:43,0:1529,0:-137.901,-12.9443,0,-137.901,-12.9443,-137.901	1/1:40:0,40,0:0:0:40,0:1428,0:-128.818,-12.0412,0,-128.818,-12.0412,-128.818	1/1:41:0,41,0:0:0:41,0:1468,0:-132.416,-12.3422,0,-132.416,-12.3422,-132.416	1/1:37:0,36,0:0:0:36,0:1296,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:144:0,142,1:0:0:142,1:5036,36:-453.021,-42.7463,0,-450.083,-39.8088,-449.782	1/1:183:0,182,0:0:0:182,0:6416,0:-577.162,-54.7875,0,-577.162,-54.7875,-577.162	1/2:20:0,9,11:0:0:9,11:324,392:-58.7471,-32.3087,-29.5995,-26.7966,0,-23.4853	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/2:88:0,76,12:0:0:76,12:2717,428:-256.783,-35.2458,-12.3675,-221.893,0,-218.281	1/1:75:0,74,0:0:0:74,0:2634,0:-236.942,-22.2762,0,-236.942,-22.2762,-236.942	1/2:243:0,131,109:0:0:131,109:4652,3794:-687.558,-308.505,-269.07,-379.08,0,-346.267	1/2:138:0,80,58:0:0:80,58:2846,2065:-400.583,-168.656,-144.574,-232.282,0,-214.823	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/1:176:0,173,0:0:0:173,0:6130,0:-551.437,-52.0782,0,-551.437,-52.0782,-551.437	1/1:189:0,183,4:0:0:183,4:6486,144:-583.454,-55.0885,0,-571.704,-43.3388,-570.5	1/2:76:0,55,21:0:0:55,21:1964,756:-222.165,-62.0456,-45.4889,-160.479,0,-154.157	1/2:10:0,6,4:0:0:6,4:212,144:-29.3709,-12.1095,-10.3033,-17.6186,0,-16.4145	1/1:21:0,21,0:0:0:21,0:741,0:-67.0116,-6.32163,0,-67.0116,-6.32163,-67.0116	1/2:3:0,1,2:0:0:1,2:36,68:-8.79971,-5.85565,-5.55462,-3.29724,0,-2.69518	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:8:0,7,0:0:0:7,0:252,0:-22.7128,-2.10721,0,-22.7128,-2.10721,-22.7128	1/1:129:0,128,0:0:0:128,0:4566,0:-410.744,-38.5318,0,-410.744,-38.5318,-410.744	1/2:133:0,105,28:0:0:105,28:3742,985:-385.549,-80.5313,-48.9232,-305.37,0,-296.941	1/2:31:0,13,18:0:0:13,18:468,644:-91.0404,-52.853,-48.9396,-38.5463,0,-33.1277	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:76:0,47,29:0:0:47,29:1662,994:-216.404,-81.0354,-66.887,-135.715,0,-126.985	1/2:24:0,6,16:0:0:6,16:216,546:-61.9183,-44.2895,-42.4833,-17.6282,0,-12.8118	1/1:54:0,54,0:0:0:54,0:1925,0:-173.525,-16.2556,0,-173.525,-16.2556,-173.525	1/1:47:0,46,0:0:0:46,0:1626,0:-146.251,-13.8474,0,-146.251,-13.8474,-146.251	1/1:55:0,53,0:0:0:53,0:1878,0:-169.007,-15.9546,0,-169.007,-15.9546,-169.007	1/2:75:0,49,24:0:0:49,24:1749,841:-211.031,-68.441,-53.6906,-142.601,0,-135.377	1/2:62:0,44,18:0:0:44,18:1565,644:-180.409,-52.8721,-39.6267,-127.894,0,-122.476	1/2:130:0,90,40:0:0:90,40:3224,1405:-377.64,-114.704,-87.6113,-263.289,0,-251.248	1/1:92:0,92,0:0:0:92,0:3293,0:-296.587,-27.6948,0,-296.587,-27.6948,-296.587	1/1:127:0,123,0:0:0:123,0:4344,0:-390.82,-37.0267,0,-390.82,-37.0267,-390.82	1/1:176:0,176,0:0:0:176,0:6211,0:-559.084,-52.9813,0,-559.084,-52.9813,-559.084	1/2:8:0,6,2:0:0:6,2:216,68:-23.4951,-5.85565,-4.04947,-17.9843,0,-17.3823	1/2:84:0,61,23:0:0:61,23:2192,813:-245.392,-66.5654,-48.2026,-179.181,0,-172.257	1/1:21:0,21,0:0:0:21,0:741,0:-67.0116,-6.32163,0,-67.0116,-6.32163,-67.0116	1/2:20:0,7,13:0:0:7,13:252,453:-57.7522,-37.1862,-35.079,-20.9217,0,-17.0084	1/2:59:0,37,22:0:0:37,22:1302,773:-169.228,-63.241,-52.1029,-106.339,0,-99.716	1/2:25:0,18,7:0:0:18,7:633,248:-72.0713,-20.5564,-15.1378,-51.8683,0,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chr08	734541	.	G	A	43050.5	PASS	AB=0.290251;ABP=688.94;AC=152;AF=0.817204;AN=186;AO=2177;CIGAR=1X;DP=3461;DPB=3461;DPRA=0;EPP=4686.98;EPPR=615.9;GTI=13;LEN=1;MEANALT=1;MQM=49.1034;MQMR=59.472;NS=93;NUMALT=1;ODDS=1.17507;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77572;QR=45757;RO=1284;RPL=6;RPP=4678.33;RPPR=615.9;RPR=2171;RUN=1;SAF=1;SAP=4721.62;SAR=2176;SRF=0;SRP=2791.18;SRR=1284;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:23,20:23:820:20:707:-50.0118,0,-61.1774	1/1:18:0,18:0:0:18:644:-57.7165,-5.41854,0	0/1:72:58,14:58:2063:14:500:-22.637,0,-164.222	0/1:101:70,31:70:2508:31:1103:-68.1172,0,-195.557	0/1:30:25,5:25:900:5:180:-7.4069,0,-72.284	0/1:5:4,1:4:144:1:36:-2.06828,0,-11.8085	1/1:17:0,17:0:0:17:612:-54.4376,-5.11751,0	1/1:69:0,69:0:0:69:2475:-217.917,-20.7711,0	1/1:16:1,15:1:36:15:536:-44.3071,-1.21821,0	1/1:22:0,22:0:0:22:788:-70.162,-6.62266,0	1/1:26:0,26:0:0:26:936:-83.6366,-7.82678,0	1/1:24:0,24:0:0:24:851:-75.9348,-7.22472,0	1/1:24:1,23:1:36:23:819:-69.6337,-3.62645,0	1/1:28:0,28:0:0:28:991:-88.8757,-8.42884,0	1/1:23:0,23:0:0:23:805:-72.1934,-6.92369,0	1/1:25:0,25:0:0:25:892:-79.4394,-7.52575,0	1/1:22:0,22:0:0:22:779:-69.5583,-6.62266,0	1/1:18:0,18:0:0:18:640:-57.558,-5.41854,0	1/1:10:0,10:0:0:10:356:-32.1686,-3.0103,0	1/1:45:0,45:0:0:45:1608:-144.081,-13.5464,0	1/1:14:0,14:0:0:14:504:-45.3875,-4.21442,0	0/1:82:70,12:70:2492:12:424:-13.7804,0,-199.847	1/1:34:0,34:0:0:34:1216:-108.603,-10.235,0	0/1:9:6,3:6:212:3:108:-7.29635,0,-16.7155	1/1:18:0,18:0:0:18:639:-57.4529,-5.41854,0	0/1:142:106,36:106:3804:36:1277:-72.3338,0,-299.794	0/1:136:93,43:93:3319:43:1536:-96.4697,0,-257.94	1/1:9:0,9:0:0:9:316:-28.6069,-2.70927,0	1/1:142:1,141:1:36:141:5038:-449.304,-39.148,0	1/1:40:2,38:2:72:38:1355:-114.54,-5.20932,0	0/1:32:16,16:16:557:16:572:-41.8385,0,-40.788	1/1:2:0,2:0:0:2:72:-6.42301,-0.60206,0	1/1:2:0,2:0:0:2:57:-5.38911,-0.60206,0	1/1:7:0,7:0:0:7:252:-22.8819,-2.10721,0	1/1:5:0,5:0:0:5:176:-15.5439,-1.50515,0	1/1:5:0,5:0:0:5:172:-15.7309,-1.50515,0	1/1:78:0,78:0:0:78:2773:-249.562,-23.4803,0	0/1:45:40,5:40:1432:5:176:-2.53798,0,-115.595	0/1:39:29,10:29:1019:10:351:-19.9856,0,-80.2738	1/1:3:0,3:0:0:3:104:-9.64703,-0.90309,0	0/1:52:36,16:36:1292:16:567:-35.2982,0,-100.93	0/1:21:17,4:17:589:4:144:-6.90008,0,-46.7593	1/1:45:0,45:0:0:45:1612:-143.615,-13.5464,0	1/1:35:0,35:0:0:35:1243:-110.472,-10.5361,0	1/1:18:0,18:0:0:18:628:-56.0771,-5.41854,0	0/1:38:26,12:26:936:12:432:-27.7494,0,-73.1194	0/1:58:41,17:41:1463:17:608:-37.2415,0,-114.491	0/1:133:87,46:87:3087:46:1639:-105.722,0,-237.996	1/1:17:0,17:0:0:17:612:-54.685,-5.11751,0	1/1:47:3,44:3:104:44:1568:-130.809,-4.4456,0	1/1:26:0,26:0:0:26:924:-83.3489,-7.82678,0	0/1:5:2,3:2:72:3:108:-8.50047,0,-5.33157	0/1:61:50,11:50:1777:11:396:-17.3715,0,-141.793	1/1:5:0,5:0:0:5:180:-16.4473,-1.50515,0	.:.:.:.:.:.:.:.	0/1:62:33,29:33:1184:29:1040:-73.9159,0,-88.1999	0/1:28:20,8:20:716:8:284:-17.3066,0,-56.1826	1/1:10:0,10:0:0:10:360:-32.6578,-3.0103,0	0/1:13:9,4:9:320:4:144:-9.36833,0,-25.2271	1/1:14:0,14:0:0:14:504:-45.3826,-4.21442,0	1/1:31:0,31:0:0:31:1083:-96.5619,-9.33193,0	1/1:4:0,4:0:0:4:144:-13.2217,-1.20412,0	0/1:95:67,28:67:2379:28:1004:-61.9548,0,-185.756	1/1:70:0,70:0:0:70:2487:-222.029,-21.0721,0	0/1:11:1,10:1:36:10:360:-29.2069,0,-0.286945	1/1:27:1,26:1:36:26:928:-79.6815,-4.52954,0	1/1:23:0,23:0:0:23:828:-73.3093,-6.92369,0	0/1:59:51,8:51:1811:8:284:-7.97472,0,-145.484	1/1:19:0,19:0:0:19:684:-60.7742,-5.71957,0	1/1:18:0,18:0:0:18:640:-57.2066,-5.41854,0	1/1:19:0,19:0:0:19:671:-60.6072,-5.71957,0	1/1:9:0,9:0:0:9:316:-28.6021,-2.70927,0	1/1:14:0,14:0:0:14:504:-45.401,-4.21442,0	0/1:66:33,33:33:1171:33:1158:-84.0152,0,-85.8174	1/1:33:0,33:0:0:33:1188:-106.488,-9.93399,0	1/1:56:0,56:0:0:56:1995:-178.633,-16.8577,0	1/1:22:0,22:0:0:22:784:-70.0721,-6.62266,0	1/1:38:0,38:0:0:38:1352:-120.847,-11.4391,0	0/1:14:4,10:4:144:10:360:-27.9527,0,-9.0992	1/1:27:0,27:0:0:27:953:-84.4988,-8.12781,0	0/1:75:49,26:49:1735:26:936:-61.3985,0,-133.761	1/1:89:0,89:0:0:89:3187:-283.745,-26.7917,0	0/1:28:20,8:20:716:8:288:-17.6572,0,-56.3389	1/1:30:1,29:1:36:29:1040:-89.6677,-5.43263,0	0/1:29:21,8:21:747:8:284:-17.0153,0,-58.7996	1/1:43:0,43:0:0:43:1540:-138.011,-12.9443,0	1/1:15:0,15:0:0:15:540:-48.6035,-4.51545,0	0/1:37:28,9:28:1000:9:324:-18.1728,0,-78.771	1/1:32:0,32:0:0:32:1137:-101.96,-9.63296,0	0/1:50:41,9:41:1459:9:324:-14.2507,0,-116.549	0/1:70:51,19:51:1817:19:676:-39.725,0,-142.58	0/1:54:47,7:47:1680:7:244:-5.92626,0,-135.189	1/1:46:0,46:0:0:46:1617:-144.217,-13.8474,0	1/1:38:0,38:0:0:38:1343:-119.451,-11.4391,0
chr08	741628	.	T	G	97382.9	PASS	AB=0.462442;ABP=58.3056;AC=152;AF=0.808511;AN=188;AO=8140;CIGAR=1X;DP=10588;DPB=10588;DPRA=0;EPP=17618;EPPR=5253.76;GTI=4;LEN=1;MEANALT=1.05319;MQM=25.8466;MQMR=48.613;NS=94;NUMALT=1;ODDS=0.455879;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=290104;QR=87536;RO=2442;RPL=1;RPP=17670.1;RPPR=5288.39;RPR=8139;RUN=1;SAF=8;SAP=17609.4;SAR=8132;SRF=4;SRP=5271.06;SRR=2438;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:43,12:43:1548:12:428:-12.6211,0,-119.466	1/1:114:2,112:2:72:112:3995:-248.091,-27.6275,0	0/1:100:61,39:61:2188:39:1395:-60.0825,0,-163.994	0/1:244:127,117:127:4564:117:4160:-195.521,0,-331.301	0/1:135:68,67:68:2440:67:2404:-104.218,0,-176.417	0/1:94:68,26:68:2448:26:928:-31.725,0,-188.506	1/1:103:0,103:0:0:103:3681:-226.699,-31.0061,0	1/1:103:0,103:0:0:103:3670:-236.231,-31.0061,0	1/1:52:0,52:0:0:52:1837:-119.176,-15.6536,0	1/1:140:0,140:0:0:140:4996:-318.786,-42.1442,0	1/1:42:0,42:0:0:42:1503:-97.7619,-12.6433,0	1/1:23:0,23:0:0:23:820:-52.6514,-6.92369,0	1/1:21:0,21:0:0:21:743:-48.2622,-6.32163,0	1/1:59:0,59:0:0:59:2108:-128.377,-17.7608,0	1/1:67:0,67:0:0:67:2383:-153.27,-20.169,0	1/1:59:0,59:0:0:59:2104:-127.273,-17.7608,0	1/1:28:0,28:0:0:28:991:-64.2754,-8.42884,0	1/1:24:0,24:0:0:24:860:-55.306,-7.22472,0	1/1:13:1,12:1:36:12:423:-24.1414,-0.52579,0	1/1:262:0,262:0:0:262:9328:-604.272,-78.8699,0	1/1:193:0,193:0:0:193:6883:-412.064,-58.0988,0	0/1:152:103,49:103:3666:49:1733:-73.4919,0,-282.192	1/1:106:0,106:0:0:106:3773:-246.436,-31.9092,0	0/1:185:64,121:64:2300:121:4300:-207.983,0,-147.789	1/1:102:0,102:0:0:102:3611:-220.998,-30.7051,0	0/1:500:261,239:261:9364:239:8534:-429.695,0,-688.035	0/1:278:129,148:129:4613:148:5270:-227.17,0,-326.571	1/1:38:0,38:0:0:38:1368:-78.8652,-11.4391,0	1/1:371:0,370:0:0:370:13241:-913.95,-111.381,0	1/1:166:9,157:9:324:157:5639:-303.735,-21.3048,0	0/1:136:66,70:66:2364:70:2516:-116.094,0,-169.804	0/1:12:7,5:7:248:5:180:-7.77887,0,-18.3829	1/1:21:0,21:0:0:21:743:-45.3564,-6.32163,0	0/1:6:3,3:3:108:3:104:-5.30611,0,-8.06675	1/1:1:0,1:0:0:1:32:-2.33634,-0.30103,0	1/1:5:0,5:0:0:5:176:-11.7187,-1.50515,0	1/1:198:0,198:0:0:198:7051:-481.498,-59.6039,0	0/1:336:150,186:150:5369:186:6598:-297.923,0,-371.709	0/1:22:10,12:10:360:12:432:-21.2672,0,-25.8475	1/1:2:0,2:0:0:2:72:-5.03016,-0.60206,0	0/1:137:69,67:69:2484:67:2392:-97.5347,0,-177.398	0/1:30:18,12:18:648:12:432:-17.0921,0,-49.2495	1/1:200:0,200:0:0:200:7126:-421.457,-60.206,0	1/1:91:0,91:0:0:91:3241:-210.647,-27.3937,0	1/1:64:0,64:0:0:64:2292:-151.665,-19.2659,0	0/1:137:67,70:67:2397:70:2507:-132.809,0,-173.18	0/1:142:108,34:108:3842:34:1192:-34.0876,0,-294.892	0/1:366:148,217:148:5297:217:7710:-377.349,0,-362.211	1/1:171:0,171:0:0:171:6121:-397.056,-51.4761,0	1/1:313:0,313:0:0:313:11183:-723.019,-94.2224,0	1/1:142:0,142:0:0:142:5075:-352.098,-42.7463,0	0/1:15:12,3:12:432:3:108:-2.44768,0,-34.4929	0/1:106:73,33:73:2612:33:1173:-43.7678,0,-198.095	1/1:26:0,26:0:0:26:917:-59.5932,-7.82678,0	0/1:3:2,1:2:72:1:36:-1.65562,0,-5.78683	0/1:162:80,82:80:2876:82:2940:-125.128,0,-206.601	0/1:80:42,38:42:1508:38:1360:-64.9538,0,-109.765	1/1:15:0,15:0:0:15:517:-38.0612,-4.51545,0	0/1:24:18,6:18:648:6:216:-7.07196,0,-50.3373	1/1:89:0,89:0:0:89:3169:-189.277,-26.7917,0	1/1:142:1,141:1:36:141:5035:-323.68,-39.1794,0	1/1:12:0,12:0:0:12:432:-28.0652,-3.61236,0	0/1:218:101,117:101:3621:117:4178:-219.048,0,-259.319	1/1:290:1,289:1:36:289:10318:-656.973,-83.7055,0	1/1:117:0,117:0:0:117:4122:-232.997,-35.2205,0	1/1:108:0,108:0:0:108:3773:-249.798,-32.5112,0	1/1:200:0,200:0:0:200:7130:-449.944,-60.206,0	0/1:124:91,33:91:3261:33:1180:-39.6795,0,-252.537	1/1:14:0,14:0:0:14:504:-31.8033,-4.21442,0	1/1:18:0,18:0:0:18:648:-41.7069,-5.41854,0	1/1:76:0,76:0:0:76:2713:-186.289,-22.8783,0	1/1:27:0,27:0:0:27:964:-62.0885,-8.12781,0	1/1:52:0,52:0:0:52:1872:-119.411,-15.6536,0	0/1:66:40,26:40:1436:26:936:-40.0943,0,-107.479	1/1:166:0,166:0:0:166:5908:-352.729,-49.971,0	1/1:263:0,263:0:0:263:9381:-597.22,-79.1709,0	1/1:89:0,89:0:0:89:3140:-205.517,-26.7917,0	1/1:93:1,92:1:36:92:3285:-207.24,-24.4748,0	0/1:16:11,5:11:396:5:180:-6.95357,0,-30.6151	1/1:196:3,193:3:93:193:6877:-404.436,-50.6213,0	0/1:132:83,49:83:2980:49:1743:-73.0165,0,-222.84	1/1:254:0,254:0:0:254:9062:-579.683,-76.4616,0	0/1:113:61,52:61:2177:52:1851:-82.8937,0,-161.149	1/1:57:0,57:0:0:57:2040:-131.063,-17.1587,0	0/1:133:77,56:77:2772:56:1996:-91.4004,0,-206.895	1/1:187:1,186:1:36:186:6606:-430.194,-52.6994,0	1/1:14:0,14:0:0:14:491:-31.9735,-4.21442,0	0/1:68:56,12:56:2016:12:428:-7.04968,0,-155.88	1/1:38:0,38:0:0:38:1368:-87.5965,-11.4391,0	0/1:20:10,10:10:360:10:356:-14.2972,0,-26.3649	0/1:88:44,44:44:1584:44:1555:-66.2948,0,-112.952	0/1:78:52,26:52:1868:26:928:-34.1055,0,-144.025	1/1:139:0,137:0:0:137:4877:-314.78,-41.2411,0	1/1:99:0,99:0:0:99:3507:-224.048,-29.802,0
chr08	741637	.	A	T	99163.3	PASS	AB=0.466948;ABP=45.7866;AC=152;AF=0.808511;AN=188;AO=8243;CIGAR=1X;DP=10669;DPB=10669;DPRA=0;EPP=17902.5;EPPR=5229.78;GTI=3;LEN=1;MEANALT=1.04255;MQM=25.8521;MQMR=48.6647;NS=94;NUMALT=1;ODDS=0.401175;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=295397;QR=86410;RO=2419;RPL=8;RPP=17833;RPPR=5195.18;RPR=8235;RUN=1;SAF=8;SAP=17833;SAR=8235;SRF=4;SRP=5221.12;SRR=2415;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:42,12:42:1491:12:428:-12.939,0,-115.538	1/1:116:2,114:2:72:114:4096:-253.566,-28.2296,0	0/1:99:61,38:61:2187:38:1368:-58.2722,0,-164.742	0/1:246:127,119:127:4560:119:4245:-200.74,0,-330.884	0/1:134:67,67:67:2399:67:2412:-104.643,0,-173.072	0/1:95:69,26:69:2472:26:936:-31.5248,0,-190.39	1/1:102:0,102:0:0:102:3652:-224.239,-30.7051,0	1/1:104:0,104:0:0:104:3728:-238.927,-31.3071,0	1/1:53:0,53:0:0:53:1900:-121.902,-15.9546,0	1/1:144:0,144:0:0:144:5172:-327.674,-43.3483,0	1/1:42:0,42:0:0:42:1508:-98.0702,-12.6433,0	1/1:23:0,23:0:0:23:816:-52.5841,-6.92369,0	1/1:21:0,21:0:0:21:756:-48.4479,-6.32163,0	1/1:58:0,58:0:0:58:2076:-126.517,-17.4597,0	1/1:69:0,69:0:0:69:2455:-158.616,-20.7711,0	1/1:60:0,60:0:0:60:2152:-129.295,-18.0618,0	1/1:28:0,28:0:0:28:1008:-64.568,-8.42884,0	1/1:24:0,24:0:0:24:864:-55.3565,-7.22472,0	1/1:13:0,13:0:0:13:468:-30.777,-3.91339,0	1/1:267:0,267:0:0:267:9559:-616.608,-80.375,0	1/1:194:0,194:0:0:194:6948:-415.675,-58.3998,0	0/1:152:101,51:101:3598:51:1832:-79.7041,0,-276.506	1/1:107:0,107:0:0:107:3844:-249.96,-32.2102,0	0/1:184:63,121:63:2255:121:4321:-209.007,0,-144.668	1/1:105:1,104:1:32:104:3736:-222.094,-28.472,0	0/1:498:257,241:257:9197:241:8644:-436.998,0,-673.759	0/1:278:126,152:126:4502:152:5464:-237.21,0,-316.753	1/1:39:0,39:0:0:39:1392:-80.6178,-11.7402,0	1/1:377:0,377:0:0:377:13502:-929.301,-113.488,0	1/1:167:9,158:9:324:158:5684:-305.874,-21.6058,0	0/1:136:67,69:67:2404:69:2468:-114.089,0,-173.508	0/1:12:7,5:7:252:5:180:-7.77887,0,-18.7209	1/1:22:0,22:0:0:22:788:-47.3083,-6.62266,0	0/1:5:2,3:2:72:3:108:-5.65923,0,-5.18477	1/1:1:0,1:0:0:1:36:-2.37353,-0.30103,0	1/1:6:0,6:0:0:6:212:-14.0217,-1.80618,0	1/1:201:0,201:0:0:201:7228:-490.559,-60.507,0	0/1:333:147,186:147:5245:186:6672:-298.477,0,-362.484	0/1:22:10,12:10:360:12:432:-21.2672,0,-25.6263	1/1:2:0,2:0:0:2:72:-5.03016,-0.60206,0	0/1:138:71,64:71:2539:64:2287:-92.0416,0,-182.45	0/1:31:18,13:18:639:13:459:-18.9933,0,-48.1419	1/1:203:0,203:0:0:203:7272:-429.995,-61.1091,0	1/1:92:0,90:0:0:90:3202:-209.004,-27.0927,0	1/1:64:0,64:0:0:64:2296:-151.769,-19.2659,0	0/1:139:66,73:66:2346:73:2590:-137.883,0,-168.055	0/1:142:108,34:108:3866:34:1216:-34.5539,0,-296.645	0/1:375:152,223:152:5389:223:7996:-390.211,0,-367.911	1/1:171:0,171:0:0:171:6124:-398.002,-51.4761,0	1/1:314:0,314:0:0:314:11264:-725.417,-94.5234,0	1/1:141:0,141:0:0:141:5060:-349.633,-42.4452,0	0/1:14:11,3:11:396:3:108:-2.74871,0,-31.5569	0/1:107:73,34:73:2601:34:1216:-45.9405,0,-196.995	1/1:27:0,27:0:0:27:968:-62.2754,-8.12781,0	0/1:3:2,1:2:72:1:36:-1.65562,0,-5.78683	0/1:157:77,80:77:2734:80:2872:-122.47,0,-196.25	0/1:78:40,38:40:1440:38:1364:-65.4968,0,-104.704	1/1:16:0,16:0:0:16:546:-39.9981,-4.81648,0	0/1:23:17,6:17:608:6:212:-7.35509,0,-47.0662	1/1:92:0,92:0:0:92:3272:-195.837,-27.6948,0	1/1:142:1,140:1:36:140:5020:-322.03,-39.1707,0	1/1:12:0,12:0:0:12:432:-28.0652,-3.61236,0	0/1:218:101,117:101:3600:117:4190:-220.737,0,-256.561	1/1:296:1,295:1:36:295:10565:-671.345,-85.5117,0	1/1:118:0,118:0:0:118:4216:-235.709,-35.5215,0	1/1:113:0,113:0:0:113:4041:-264.43,-34.0164,0	1/1:201:0,200:0:0:200:7175:-451.019,-60.206,0	0/1:122:89,33:89:3178:33:1188:-40.336,0,-245.879	1/1:14:0,14:0:0:14:504:-31.8033,-4.21442,0	1/1:17:0,17:0:0:17:612:-39.4041,-5.11751,0	1/1:78:0,78:0:0:78:2808:-190.584,-23.4803,0	1/1:27:0,27:0:0:27:968:-62.1924,-8.12781,0	1/1:52:0,52:0:0:52:1864:-119.31,-15.6536,0	0/1:64:38,26:38:1364:26:932:-40.6459,0,-101.743	1/1:172:0,172:0:0:172:6152:-366.828,-51.7772,0	1/1:267:1,266:1:36:266:9527:-600.615,-76.8082,0	1/1:90:0,90:0:0:90:3228:-208.769,-27.0927,0	1/1:94:1,93:1:36:93:3336:-209.909,-24.7758,0	0/1:16:11,5:11:396:5:180:-6.95357,0,-30.6151	1/1:198:2,196:2:72:196:7028:-412.056,-52.7844,0	0/1:134:85,49:85:3024:49:1756:-72.6561,0,-226.669	1/1:262:0,262:0:0:262:9404:-598.24,-78.8699,0	0/1:113:60,53:60:2160:53:1904:-85.3404,0,-159.619	1/1:56:0,56:0:0:56:2016:-129.131,-16.8577,0	0/1:132:74,58:74:2633:58:2080:-95.9276,0,-195.036	1/1:193:1,192:1:27:192:6871:-447.398,-55.3997,0	1/1:14:0,14:0:0:14:500:-32.1259,-4.21442,0	0/1:67:55,12:55:1965:12:432:-7.38449,0,-151.66	1/1:38:0,38:0:0:38:1364:-87.5461,-11.4391,0	0/1:20:10,10:10:351:10:360:-14.3246,0,-25.5594	0/1:89:44,45:44:1576:45:1616:-68.1286,0,-112.155	0/1:78:52,26:52:1868:26:936:-34.2367,0,-144.025	1/1:143:0,143:0:0:143:5132:-330.068,-43.0473,0	1/1:99:0,99:0:0:99:3538:-223.964,-29.802,0
chr08	743902	.	T	G	48874.2	PASS	AB=0.475798;ABP=26.4497;AC=36;AF=0.191489;AN=188;AO=2210;CIGAR=1X;DP=13035;DPB=13035;DPRA=1.00983;EPP=287.408;EPPR=780.434;GTI=1;LEN=1;MEANALT=1.08889;MQM=59.991;MQMR=59.9928;NS=94;NUMALT=1;ODDS=2.53134;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78566;QR=387475;RO=10818;RPL=2192;RPP=4646.89;RPPR=22429.3;RPR=18;RUN=1;SAF=818;SAP=326.742;SAR=1392;SRF=4301;SRP=988.715;SRR=6517;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:168:168,0:168:6040:0:0:0,-50.573,-543.699	0/1:101:60,41:60:2156:41:1456:-100.932,0,-163.903	0/1:314:158,155:158:5647:155:5499:-400.457,0,-413.769	0/1:116:72,44:72:2588:44:1554:-105.231,0,-198.249	0/1:64:31,33:31:1112:33:1162:-85.6194,0,-81.1254	0/0:194:194,0:194:6925:0:0:0,-58.3998,-623.317	0/0:233:233,0:233:8328:0:0:0,-70.14,-749.527	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.217	0/0:210:210,0:210:7531:0:0:0,-63.2163,-677.828	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.792	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:131:131,0:131:4712:0:0:0,-39.4349,-424.237	0/0:89:89,0:89:3175:0:0:0,-26.7917,-285.974	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:164:164,0:164:5867:0:0:0,-49.3689,-528.141	0/0:242:242,0:242:8672:0:0:0,-72.8493,-780.469	0/1:55:19,36:19:684:36:1266:-97.6845,0,-45.3337	0/0:163:163,0:163:5860:0:0:0,-49.0679,-527.508	0/1:210:130,80:130:4672:80:2811:-190.013,0,-357.423	0/0:114:112,2:112:4008:2:72:0,-27.4807,-354.073	0/1:444:233,211:233:8328:211:7508:-542.109,0,-615.869	0/1:383:226,157:226:8108:157:5609:-389.637,0,-614.44	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:345:345,0:345:12360:0:0:0,-103.855,-1112.24	0/0:219:212,7:212:7600:7:248:0,-43.2647,-661.376	0/1:162:86,76:86:3061:76:2714:-195.735,0,-226.952	0/1:16:6,10:6:212:10:352:-27.2017,0,-14.6083	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:331:331,0:331:11815:0:0:0,-99.6409,-1063.21	0/1:209:122,87:122:4372:87:3124:-218.47,0,-330.738	0/1:88:48,40:48:1719:40:1413:-100.975,0,-128.504	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:182:110,72:110:3924:72:2576:-177.302,0,-298.567	0/1:50:29,21:29:1044:21:752:-52.9548,0,-79.2233	0/0:195:195,0:195:6992:0:0:0,-58.7008,-629.342	0/0:129:129,0:129:4611:0:0:0,-38.8329,-415.154	0/0:100:100,0:100:3587:0:0:0,-30.103,-323.036	0/1:190:110,80:110:3916:80:2819:-196.753,0,-295.437	0/1:95:48,46:48:1720:46:1626:-118.03,0,-126.488	0/1:242:130,111:130:4656:111:3951:-283.024,0,-346.442	0/0:135:134,0:134:4795:0:0:0,-40.338,-431.346	0/0:204:204,0:204:7315:0:0:0,-61.4101,-658.398	0/0:201:200,0:200:7139:0:0:0,-60.206,-642.207	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:121:66,55:66:2368:55:1957:-139.98,0,-176.953	0/0:103:103,0:103:3679:0:0:0,-31.0061,-331.313	0/1:23:8,15:8:273:15:528:-40.9277,0,-17.9765	0/1:222:111,111:111:3988:111:3949:-288.774,0,-292.28	0/1:80:33,47:33:1184:47:1654:-125.064,0,-82.7797	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/0:171:171,0:171:6104:0:0:0,-51.4761,-549.463	0/0:179:179,0:179:6412:0:0:0,-53.8844,-577.168	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:187:91,96:91:3263:96:3388:-248.844,0,-237.597	0/0:334:333,1:333:11944:1:36:0,-96.9457,-1071.21	0/0:156:156,0:156:5580:0:0:0,-46.9607,-502.324	0/0:134:133,1:133:4772:1:36:0,-36.7397,-426.038	0/0:225:223,2:223:7958:2:72:0,-60.895,-709.406	0/1:121:55,66:55:1972:66:2355:-175.784,0,-141.33	0/0:69:68,1:68:2436:1:21:0,-18.6711,-217.395	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:135:135,0:135:4838:0:0:0,-40.639,-435.572	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:65:28,37:28:1004:37:1307:-98.3638,0,-71.1089	0/0:372:371,0:371:13320:0:0:0,-111.682,-1198.23	0/0:247:247,0:247:8858:0:0:0,-74.3544,-797.201	0/0:152:152,0:152:5441:0:0:0,-45.7566,-489.817	0/0:116:115,1:115:4120:1:36:0,-31.3212,-367.386	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/0:218:217,1:217:7764:1:36:0,-62.0263,-695.194	0/1:61:24,37:24:864:37:1315:-100.288,0,-59.7197	0/0:429:429,0:429:15378:0:0:0,-129.142,-1383.5	0/1:150:74,76:74:2656:76:2728:-200.608,0,-194.131	0/0:109:109,0:109:3892:0:0:0,-32.8123,-350.475	0/1:124:68,56:68:2448:56:2000:-142.946,0,-183.247	0/0:236:234,2:234:8353:2:72:0,-64.2064,-744.941	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:87:40,46:40:1425:46:1630:-120.739,0,-102.297	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:79:39,40:39:1400:40:1431:-105.305,0,-102.518	0/1:171:83,88:83:2964:88:3131:-230.532,0,-215.518	0/1:123:36,87:36:1292:87:3112:-243.28,0,-79.5571	0/0:182:182,0:182:6523:0:0:0,-54.7875,-587.152	0/0:193:193,0:193:6923:0:0:0,-58.0988,-623.134
chr08	743906	.	G	A	140892	PASS	AB=0.508366;ABP=4.71795;AC=152;AF=0.808511;AN=188;AO=6399;CIGAR=1X;DP=7792;DPB=7792;DPRA=0;EPP=13382;EPPR=2922.37;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9966;MQMR=60;NS=94;NUMALT=1;ODDS=1.61126;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227747;QR=49586;RO=1392;RPL=6339;RPP=13382;RPPR=2930.91;RPR=60;RUN=1;SAF=0;SAP=13898.3;SAR=6399;SRF=1;SRP=3017.02;SRR=1391;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:8,8:8:288:8:276:-20.3588,0,-21.4509	1/1:163:0,163:0:0:163:5807:-522.747,-49.0679,0	0/1:101:40,61:40:1440:61:2156:-163.901,0,-99.4937	0/1:150:71,79:71:2548:79:2807:-207.716,0,-184.416	0/1:78:27,51:27:955:51:1801:-138.891,0,-62.7845	0/1:64:33,31:33:1161:31:1093:-79.4117,0,-85.5288	1/1:97:0,97:0:0:97:3444:-310.174,-29.1999,0	1/1:226:0,226:0:0:226:8058:-725.243,-68.0328,0	1/1:68:0,68:0:0:68:2398:-216.077,-20.47,0	1/1:120:0,120:0:0:120:4267:-384.209,-36.1236,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:57:0,57:0:0:57:2028:-182.793,-17.1587,0	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:64:1,63:1:36:63:2243:-198.535,-15.6676,0	1/1:93:0,93:0:0:93:3319:-298.929,-27.9958,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:49:0,49:0:0:49:1724:-155.442,-14.7505,0	1/1:139:0,139:0:0:139:4960:-446.543,-41.8432,0	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	1/1:87:0,87:0:0:87:3101:-279.316,-26.1896,0	0/1:176:72,104:72:2551:104:3711:-281.211,0,-176.86	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:256:131,125:131:4683:125:4469:-325.316,0,-344.567	0/1:127:60,67:60:2152:67:2387:-176.856,0,-155.716	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:106:0,106:0:0:106:3784:-340.76,-31.9092,0	1/1:146:4,142:4:144:142:5050:-441.336,-30.6368,0	0/1:84:38,46:38:1352:46:1644:-122.962,0,-96.6938	0/1:11:7,4:7:243:4:144:-10.0023,0,-18.8962	1/1:19:0,19:0:0:19:664:-60.0845,-5.71957,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:164:0,164:0:0:164:5832:-524.991,-49.3689,0	0/1:132:60,72:60:2160:72:2560:-190.915,0,-154.931	0/1:83:39,44:39:1387:44:1568:-116.426,0,-100.143	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:81:33,48:33:1169:48:1708:-129.622,0,-81.1319	0/1:29:14,15:14:500:15:531:-39.392,0,-36.6063	1/1:101:0,101:0:0:101:3605:-324.655,-30.404,0	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:56:0,56:0:0:56:1988:-179.194,-16.8577,0	0/1:86:41,45:41:1472:45:1596:-118.042,0,-106.888	0/1:91:44,47:44:1567:47:1674:-123.553,0,-113.927	0/1:136:63,73:63:2243:73:2596:-192.95,0,-161.193	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:121:0,121:0:0:121:4321:-389.065,-36.4246,0	1/1:131:0,131:0:0:131:4663:-419.834,-39.4349,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:119:54,65:54:1911:65:2312:-172.519,0,-136.444	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:22:15,7:15:523:7:252:-16.4063,0,-40.7758	0/1:117:58,59:58:2041:59:2093:-153.418,0,-148.74	0/1:50:30,20:30:1068:20:708:-48.9941,0,-81.3806	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:103:0,103:0:0:103:3638:-327.628,-31.0061,0	1/1:102:0,102:0:0:102:3639:-327.715,-30.7051,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:106:53,52:53:1875:52:1852:-135.041,0,-137.109	1/1:170:1,169:1:36:169:5986:-535.255,-47.5768,0	1/1:94:0,94:0:0:94:3344:-301.179,-28.2968,0	1/1:76:1,75:1:36:75:2676:-237.488,-19.28,0	1/1:130:2,128:2:72:128:4596:-406.966,-32.2972,0	0/1:67:31,36:31:1097:36:1277:-95.0621,0,-78.869	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:82:0,82:0:0:82:2902:-261.417,-24.6845,0	1/1:92:0,92:0:0:92:3268:-294.34,-27.6948,0	1/1:31:1,30:1:36:30:1068:-92.8338,-5.73366,0	1/1:76:0,76:0:0:76:2700:-243.246,-22.8783,0	0/1:63:36,27:36:1279:27:963:-68.0217,0,-96.4476	1/1:228:0,228:0:0:228:8103:-729.295,-68.6348,0	1/1:103:0,103:0:0:103:3656:-329.247,-31.0061,0	1/1:151:0,151:0:0:151:5387:-484.963,-45.4555,0	1/1:112:1,111:1:36:111:3940:-351.195,-30.1171,0	0/1:24:14,10:14:491:10:360:-25.5196,0,-37.2964	1/1:105:0,105:0:0:105:3747:-337.431,-31.6082,0	0/1:60:37,23:37:1319:23:794:-53.714,0,-100.949	1/1:208:0,208:0:0:208:7391:-665.242,-62.6142,0	0/1:92:52,40:52:1860:40:1409:-99.4103,0,-139.985	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:77:33,44:33:1184:44:1559:-117.422,0,-83.689	1/1:105:1,104:1:36:104:3665:-326.457,-28.0099,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:85:46,39:46:1630:39:1383:-99.1805,0,-121.4	1/1:54:0,54:0:0:54:1918:-172.896,-16.2556,0	0/1:49:27,22:27:957:22:792:-56.8552,0,-71.6934	0/1:70:45,25:45:1608:25:891:-59.4367,0,-123.938	0/1:61:42,19:42:1508:19:680:-43.1663,0,-117.652	1/1:101:0,101:0:0:101:3595:-323.758,-30.404,0	1/1:111:0,111:0:0:111:3964:-356.952,-33.4143,0
chr08	745366	.	A	G	35833.1	PASS	AB=0.549882;ABP=85.1141;AC=36;AF=0.191489;AN=188;AO=2111;CIGAR=1X;DP=8592;DPB=8592;DPRA=2.08415;EPP=4586.99;EPPR=14067.6;GTI=3;LEN=1;MEANALT=1.08163;MQM=54.1686;MQMR=59.943;NS=94;NUMALT=1;ODDS=0.292627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75313;QR=231756;RO=6477;RPL=0;RPP=4586.99;RPPR=14067.6;RPR=2111;RUN=1;SAF=2111;SAP=4586.99;SAR=0;SRF=6477;SRP=14067.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:8,20:8:288:20:716:-56.1647,0,-17.8386	0/0:161:160,1:160:5713:1:36:0,-44.8766,-510.681	0/1:112:65,47:65:2336:47:1692:-118.417,0,-176.781	0/1:305:124,181:124:4456:181:6472:-489.298,0,-309.394	0/1:44:30,14:30:1080:14:496:-31.5439,0,-84.2679	0/1:63:31,32:31:1112:32:1144:-83.841,0,-81.4265	0/0:80:79,1:79:2794:1:36:0,-20.4867,-248.103	0/0:130:130,0:130:4627:0:0:0,-39.1339,-416.578	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082	0/0:99:99,0:99:3541:0:0:0,-29.802,-318.897	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.135	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/0:180:180,0:180:6457:0:0:0,-54.1854,-581.204	0/1:176:71,104:71:2552:104:3735:-282.942,0,-176.89	0/0:95:95,0:95:3397:0:0:0,-28.5978,-305.941	0/1:137:76,61:76:2694:61:2149:-150.983,0,-201.46	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/1:252:92,160:92:3293:160:5732:-439.475,0,-220.642	0/1:193:78,115:78:2800:115:4111:-311.008,0,-194.136	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:310:309,1:309:11076:1:36:0,-89.722,-993.119	0/0:225:217,8:217:7758:8:284:0,-41.9036,-672.403	0/1:139:54,85:54:1910:85:3046:-231.793,0,-130.33	0/1:10:8,2:8:273:2:72:-3.81673,0,-21.8899	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:12:4,8:4:144:8:288:-22.5834,0,-9.70126	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.22	0/1:285:139,146:139:4966:146:5229:-382.012,0,-361.283	0/1:36:26,10:26:936:10:345:-20.4154,0,-73.7224	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:150:63,87:63:2260:87:3116:-234.874,0,-158.508	0/1:24:9,15:9:324:15:536:-41.2835,0,-22.2811	0/0:108:108,0:108:3869:0:0:0,-32.5112,-348.403	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/1:126:61,65:61:2184:65:2319:-170.889,0,-158.896	0/1:130:51,79:51:1817:79:2813:-213.036,0,-124.675	0/1:283:132,150:132:4695:150:5304:-391.337,0,-337.327	0/0:127:127,0:127:4545:0:0:0,-38.2308,-409.215	0/0:259:258,1:258:9238:1:36:0,-74.3711,-826.991	0/0:98:98,0:98:3493:0:0:0,-29.5009,-314.561	0/1:8:4,4:4:144:4:144:-10.8982,0,-10.9054	0/1:92:46,46:46:1637:46:1637:-118.444,0,-119.919	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:35:24,11:24:864:11:396:-25.1729,0,-67.5456	0/1:129:59,69:59:2109:69:2445:-180.155,0,-151.333	0/1:86:43,43:43:1544:43:1515:-110.062,0,-113.364	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:16:2,14:2:72:14:485:-38.9357,0,-2.02024	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.427	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:211:92,118:92:3251:118:4221:-315.935,0,-229.233	0/0:152:151,1:151:5413:1:36:0,-42.1609,-483.684	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.225	0/0:190:188,2:188:6734:2:72:0,-50.4522,-599.387	0/1:199:56,143:56:2016:143:5092:-397.489,0,-121.808	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:84:83,1:83:2965:1:36:0,-21.6973,-263.492	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.847	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.778	0/1:70:36,34:36:1296:34:1205:-87.2003,0,-95.8718	0/0:96:96,0:96:3422:0:0:0,-28.8989,-308.187	0/0:169:168,1:168:6002:1:36:0,-47.2784,-536.685	0/0:105:104,1:104:3740:1:36:0,-28.0251,-333.138	0/0:136:134,2:134:4777:2:72:0,-34.1205,-423.163	0/1:22:19,3:19:684:3:108:-3.42718,0,-55.2677	0/0:142:141,1:141:5045:1:32:0,-39.549,-450.992	0/1:119:63,56:63:2241:56:1997:-142.662,0,-166.129	0/0:152:151,1:151:5409:1:36:0,-42.1609,-483.338	0/1:50:19,31:19:684:31:1112:-85.1316,0,-46.8388	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:52:23,29:23:824:29:1032:-77.1083,0,-58.8298	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.165	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:48:23,25:23:828:25:900:-66.4737,0,-60.3947	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:23:15,8:15:540:8:288:-19.3065,0,-42.0128	0/1:64:34,30:34:1209:30:1057:-75.891,0,-89.8482	0/1:70:26,44:26:906:44:1580:-120.542,0,-60.2207	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34
chr08	745411	.	C	T	36158.3	PASS	AB=0.556178;ABP=105.726;AC=36;AF=0.191489;AN=188;AO=2109;CIGAR=1X;DP=8435;DPB=8435;DPRA=2.02571;EPP=4565.29;EPPR=13718;GTI=4;LEN=1;MEANALT=1.03922;MQM=54.2006;MQMR=59.9565;NS=94;NUMALT=1;ODDS=0.611091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75302;QR=223126;RO=6324;RPL=2105;RPP=4547.97;RPPR=13709.4;RPR=4;RUN=1;SAF=2107;SAP=4565.29;SAR=2;SRF=6323;SRP=13726.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:7,19:7:248:19:684:-53.8711,0,-14.8374	0/0:160:158,1:158:5595:1:36:0,-44.6335,-500.079	0/1:111:63,48:63:2204:48:1724:-121.602,0,-165.209	0/1:298:121,177:121:4291:177:6328:-478.509,0,-296.661	0/1:46:32,14:32:1152:14:504:-31.6601,0,-90.1428	0/1:62:30,32:30:1072:32:1148:-84.4997,0,-78.1286	0/0:79:78,1:78:2764:1:36:0,-20.1857,-245.405	0/0:127:127,0:127:4487:0:0:0,-38.2308,-403.994	0/0:82:82,0:82:2894:0:0:0,-24.6845,-260.698	0/0:95:95,0:95:3355:0:0:0,-28.5978,-302.164	0/0:27:27,0:27:946:0:0:0,-8.12781,-85.4529	0/0:40:40,0:40:1395:0:0:0,-12.0412,-125.844	0/0:45:45,0:45:1566:0:0:0,-13.5463,-141.229	0/0:46:46,0:46:1613:0:0:0,-13.8474,-145.454	0/0:40:40,0:40:1419:0:0:0,-12.0412,-128.007	0/0:35:35,0:35:1230:0:0:0,-10.536,-111.002	0/0:37:37,0:37:1287:0:0:0,-11.1381,-116.127	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:115:115,0:115:4055:0:0:0,-34.6184,-365.14	0/0:171:171,0:171:6031:0:0:0,-51.4761,-542.891	0/1:178:72,106:72:2521:106:3804:-288.553,0,-173.556	0/0:95:95,0:95:3371:0:0:0,-28.5978,-303.608	0/1:136:75,61:75:2647:61:2171:-153.181,0,-197.535	0/0:47:47,0:47:1652:0:0:0,-14.1484,-148.965	0/1:252:93,159:93:3289:159:5700:-436.594,0,-220.334	0/1:188:74,114:74:2644:114:4058:-307.695,0,-181.613	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:304:303,1:303:10807:1:36:0,-87.9158,-968.925	0/0:221:212,9:212:7518:9:309:0,-38.4652,-648.602	0/1:139:53,86:53:1836:86:3070:-234.06,0,-123.672	0/1:10:8,2:8:260:2:72:-3.81673,0,-20.706	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:11:4,7:4:140:7:237:-18.2977,0,-9.63325	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:87:87,0:87:3071:0:0:0,-26.1896,-276.619	0/1:281:131,150:131:4590:150:5331:-392.768,0,-328.671	0/1:37:27,10:27:956:10:348:-20.3989,0,-75.2176	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:147:61,86:61:2140:86:3086:-233.006,0,-148.615	0/1:24:9,15:9:307:15:540:-41.6424,0,-20.7355	0/0:108:108,0:108:3829:0:0:0,-32.5112,-344.808	0/0:41:41,0:41:1423:0:0:0,-12.3422,-128.362	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:125:60,65:60:2100:65:2308:-170.182,0,-151.636	0/1:127:51,76:51:1798:76:2720:-205.958,0,-123.87	0/1:281:131,150:131:4636:150:5359:-396.911,0,-332.814	0/0:125:125,0:125:4444:0:0:0,-37.6287,-400.134	0/0:247:245,2:245:8625:2:72:0,-67.5201,-768.628	0/0:96:96,0:96:3396:0:0:0,-28.8989,-305.846	0/1:7:3,4:3:108:4:144:-11.1992,0,-7.96796	0/1:89:44,45:44:1555:45:1603:-116.486,0,-113.449	0/0:24:23,1:23:799:1:36:0,-3.62644,-68.6293	0/1:33:21,12:21:748:12:413:-27.4733,0,-57.7104	0/1:128:58,70:58:2040:70:2487:-184.068,0,-145.338	0/1:83:40,43:40:1419:43:1517:-110.062,0,-103.021	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:16:2,14:2:63:14:504:-40.6195,0,-1.16667	0/0:85:85,0:85:2979:0:0:0,-25.5875,-268.34	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:205:87,118:87:3032:118:4240:-319.462,0,-211.4	0/0:143:142,1:142:5002:1:36:0,-39.4516,-446.728	0/0:79:78,1:78:2767:1:36:0,-20.1831,-245.671	0/0:109:109,0:109:3837:0:0:0,-32.8123,-345.528	0/0:183:182,1:182:6413:1:36:0,-51.5858,-573.759	0/1:192:54,138:54:1896:138:4950:-387.199,0,-113.118	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:84:83,1:83:2959:1:36:0,-21.6973,-262.954	0/0:44:44,0:44:1547:0:0:0,-13.2453,-139.519	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/0:116:116,0:116:4077:0:0:0,-34.9195,-367.117	0/1:67:34,33:34:1203:33:1179:-85.769,0,-88.406	0/0:97:97,0:97:3397:0:0:0,-29.1999,-305.944	0/0:167:166,1:166:5841:1:32:0,-47.0737,-522.607	0/0:102:101,1:101:3560:1:36:0,-27.122,-316.998	0/0:131:129,2:129:4549:2:72:0,-32.6154,-402.555	0/1:22:19,3:19:680:3:108:-3.42718,0,-54.9065	0/0:139:138,1:138:4828:1:36:0,-38.25,-431.082	0/1:116:61,55:61:2127:55:1956:-140.183,0,-156.777	0/0:146:145,1:145:5097:1:36:0,-40.3547,-455.277	0/1:50:19,31:19:684:31:1104:-84.4619,0,-46.8388	0/0:43:43,0:43:1522:0:0:0,-12.9443,-137.272	0/1:53:23,30:23:810:30:1072:-80.1839,0,-57.2644	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.132	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/1:50:22,28:22:780:28:1000:-74.8124,0,-55.4715	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/1:23:15,8:15:540:8:288:-19.3065,0,-42.0128	0/1:64:34,30:34:1185:30:1076:-77.5009,0,-87.6865	0/1:70:24,45:24:837:45:1588:-121.285,0,-53.957	0/0:84:84,0:84:2927:0:0:0,-25.2865,-263.664	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348
chr08	745573	.	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chr08	787932	.	GAC	AAC,AAG	195179	PASS	AB=0.49852,0.499865;ABP=3.08099,3.01088;AC=149,39;AF=0.792553,0.207447;AN=188;AO=7844,1880;CIGAR=1X2M,1X1M1X;DP=9750;DPB=9750;DPRA=40.1456,1.111;EPP=16578.8,3981.81;EPPR=11.6962;GTI=1;LEN=1,3;MEANALT=1.68132,2.13333;MQM=59.9881,24.3229;MQMR=60;NS=94;NUMALT=2;ODDS=2.26356;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=280816,66764;QR=142;RO=4;RPL=53,12;RPP=16578.8,3981.81;RPPR=11.6962;RPR=7791,1868;RUN=1,1;SAF=7844,1880;SAP=17036,4085.38;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,23,22:0:0:23,22:828,786:-108.213,-40.5936,-33.6699,-67.6,0,-60.9773	1/1:94:0,94,0:0:0:94,0:3357,0:-302.345,-28.2968,0,-302.345,-28.2968,-302.345	1/2:102:0,66,36:0:0:66,36:2364,1279:-258.169,-65.2962,-45.4282,-193.15,0,-182.313	1/2:193:0,88,105:0:0:88,105:3160,3727:-443.471,-185.682,-159.191,-258.089,0,-226.481	1/2:106:0,62,44:0:0:62,44:2217,1551:-257.621,-76.7732,-58.1093,-181.129,0,-167.883	1/2:104:0,45,58:0:0:45,58:1601,2080:-234.051,-103.522,-89.976,-130.512,0,-113.053	1/1:220:0,220,0:0:0:220,0:7878,0:-709.044,-66.2266,0,-709.044,-66.2266,-709.044	1/1:177:0,176,0:0:0:176,0:6304,0:-567.091,-52.9813,0,-567.091,-52.9813,-567.091	1/1:80:0,80,0:0:0:80,0:2844,0:-256.164,-24.0824,0,-256.164,-24.0824,-256.164	1/1:137:0,135,0:0:0:135,0:4781,0:-430.084,-40.6391,0,-430.084,-40.6391,-430.084	1/1:61:0,60,0:0:0:60,0:2152,0:-193.587,-18.0618,0,-193.587,-18.0618,-193.587	1/1:72:1,69,0:1:36:69,0:2484,0:-220.221,-17.8303,0,-220.522,-20.7711,-223.459	1/1:75:0,75,0:0:0:75,0:2688,0:-242.129,-22.5773,0,-242.129,-22.5773,-242.129	1/1:120:0,119,0:0:0:119,0:4276,0:-384.736,-35.8226,0,-384.736,-35.8226,-384.736	1/1:49:0,49,0:0:0:49,0:1764,0:-159.044,-14.7505,0,-159.044,-14.7505,-159.044	1/1:64:0,64,0:0:0:64,0:2297,0:-206.991,-19.2659,0,-206.991,-19.2659,-206.991	1/1:95:0,95,0:0:0:95,0:3393,0:-305.585,-28.5979,0,-305.585,-28.5979,-305.585	1/1:59:1,58,0:1:36:58,0:2088,0:-184.592,-14.1625,0,-184.893,-17.4597,-187.83	1/1:46:0,46,0:0:0:46,0:1656,0:-149.328,-13.8474,0,-149.328,-13.8474,-149.328	1/1:272:0,272,0:0:0:272,0:9729,0:-875.556,-81.8802,0,-875.556,-81.8802,-875.556	1/1:151:0,151,0:0:0:151,0:5416,0:-487.569,-45.4555,0,-487.569,-45.4555,-487.569	1/2:222:0,78,144:0:0:78,144:2796,5096:-473.545,-245.456,-221.976,-228.4,0,-185.051	1/1:45:0,44,1:0:0:44,1:1541,34:-138.748,-13.2453,0,-137.012,-11.2794,-136.711	1/2:111:0,58,52:0:0:58,52:2088,1853:-269.69,-99.2605,-81.8008,-170.478,0,-154.825	1/1:67:0,66,1:0:0:66,1:2353,36:-211.797,-19.868,0,-210.049,-17.8901,-209.748	1/2:305:0,145,160:0:0:145,160:5193,5654:-697.869,-274.306,-230.656,-423.858,0,-375.693	1/2:198:0,96,102:0:0:96,102:3439,3623:-470.352,-189.829,-160.93,-280.824,0,-250.119	1/1:48:0,48,0:0:0:48,0:1713,0:-154.454,-14.4494,0,-154.454,-14.4494,-154.454	1/1:295:0,292,1:0:0:292,1:10434,34:-938.637,-87.9008,0,-935.879,-85.1411,-935.578	1/1:117:1,114,2:1:36:114,2:4077,72:-363.602,-31.336,0,-360.406,-30.9055,-362.741	1/2:120:0,67,53:0:0:67,53:2408,1860:-290.811,-94.2916,-74.1226,-196.807,0,-180.853	1/2:6:0,2,4:0:0:2,4:72,142:-14.345,-8.43713,-7.83507,-6.23466,0,-5.03054	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	2/2:2:0,0,2:0:0:0,2:0,72:-4.32984,-4.32984,-4.32984,-0.60206,-0.60206,0	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:171:0,170,0:0:0:170,0:6100,0:-548.74,-51.1751,0,-548.74,-51.1751,-548.74	1/2:161:0,83,78:0:0:83,78:2976,2789:-379.332,-136.536,-111.55,-243.087,0,-219.606	1/2:81:0,43,38:0:0:43,38:1544,1366:-193.75,-67.7326,-54.7883,-126.309,0,-114.87	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:185:0,125,60:0:0:125,60:4477,2130:-471.161,-105.962,-68.3336,-365.47,0,-347.408	1/2:38:0,22,16:0:0:22,16:792,569:-92.8776,-28.1778,-21.5551,-64.983,0,-60.1665	1/1:181:0,181,0:0:0:181,0:6504,0:-585.441,-54.4864,0,-585.441,-54.4864,-585.441	1/1:53:0,53,0:0:0:53,0:1904,0:-171.638,-15.9546,0,-171.638,-15.9546,-171.638	1/1:58:0,58,0:0:0:58,0:2080,0:-187.47,-17.4597,0,-187.47,-17.4597,-187.47	1/2:99:0,39,59:0:0:39,59:1404,2091:-215.991,-101.379,-89.6386,-114.666,0,-96.9056	1/2:125:0,69,55:0:0:69,55:2461,1950:-299.285,-98.6014,-77.8303,-200.7,0,-184.144	1/2:159:0,113,46:0:0:113,46:4060,1627:-415.282,-83.9838,-49.9674,-331.569,0,-317.722	1/1:88:0,88,0:0:0:88,0:3168,0:-285.343,-26.4906,0,-285.343,-26.4906,-285.343	1/1:160:1,159,0:1:34:159,0:5706,0:-510.257,-44.7659,0,-510.558,-47.8638,-513.316	1/1:190:0,189,1:0:0:189,1:6781,36:-610.139,-56.8947,0,-608.476,-55.0125,-608.175	2/2:3:0,0,3:0:0:0,3:0,108:-6.38082,-6.38082,-6.38082,-0.90309,-0.90309,0	1/2:128:0,57,70:0:0:57,70:2029,2500:-289.965,-124.543,-107.384,-165.492,0,-144.42	1/1:73:0,72,1:0:0:72,1:2554,33:-229.889,-21.6742,0,-228.242,-19.8082,-227.941	1/2:16:0,7,9:0:0:7,9:252,324:-36.5971,-15.9774,-13.8702,-20.9217,0,-18.2125	1/2:175:0,75,100:0:0:75,100:2684,3521:-395.83,-176.906,-154.328,-219.228,0,-189.125	1/2:63:0,32,31:0:0:32,31:1152,1106:-1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chr08	787951	.	G	A	9914.17	PASS	AB=0.503441;ABP=3.38387;AC=39;AF=0.207447;AN=188;AO=1851;CIGAR=1X;DP=9529;DPB=9529;DPRA=1.05492;EPP=4022.41;EPPR=16671.2;GTI=1;LEN=1;MEANALT=1;MQM=24.1194;MQMR=59.9794;NS=94;NUMALT=1;ODDS=2.02201;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66438;QR=272862;RO=7676;RPL=1851;RPP=4022.41;RPPR=16671.2;RPR=0;RUN=1;SAF=1851;SAP=4022.41;SAR=0;SRF=7676;SRP=16671.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:23,22:23:828:22:792:-33.8186,0,-61.2978	0/0:92:92,0:92:3261:0:0:0,-27.6948,-293.711	0/1:101:65,36:65:2313:36:1287:-45.756,0,-178.025	0/1:188:85,103:85:3023:103:3704:-157.725,0,-215.663	0/1:104:60,44:60:2135:44:1580:-58.9632,0,-161.11	0/1:103:45,58:45:1593:58:2088:-90.0144,0,-112.652	0/0:220:220,0:220:7850:0:0:0,-66.2266,-706.53	0/0:173:173,0:173:6159:0:0:0,-52.0782,-554.407	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.554	0/0:136:136,0:136:4812:0:0:0,-40.9401,-433.237	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:72:72,0:72:2537:0:0:0,-21.6742,-228.581	0/0:72:72,0:72:2530:0:0:0,-21.6742,-227.95	0/0:112:112,0:112:3949:0:0:0,-33.7154,-355.603	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:61:61,0:61:2132:0:0:0,-18.3628,-192.144	0/0:94:94,0:94:3343:0:0:0,-28.2968,-301.088	0/0:58:58,0:58:2035:0:0:0,-17.4597,-183.42	0/0:45:45,0:45:1577:0:0:0,-13.5463,-142.218	0/0:267:267,0:267:9549:0:0:0,-80.375,-859.366	0/0:146:146,0:146:5203:0:0:0,-43.9504,-468.411	0/1:218:77,141:77:2732:141:5064:-217.059,0,-180.497	0/0:44:43,1:43:1531:1:36:0,-10.9665,-135.803	0/1:109:59,50:59:2085:50:1800:-77.1052,0,-154.736	0/0:67:66,1:66:2339:1:36:0,-17.8901,-208.491	0/1:296:143,153:143:5114:153:5484:-218.649,0,-370.87	0/1:191:91,100:91:3244:100:3588:-157.426,0,-234.686	0/0:46:46,0:46:1596:0:0:0,-13.8474,-143.926	0/0:298:298,0:298:10613:0:0:0,-89.7069,-955.085	0/0:111:109,2:109:3886:2:72:0,-29.0845,-345.605	0/1:119:66,53:66:2360:53:1904:-75.2804,0,-176.836	0/1:6:2,4:2:72:4:144:-7.84608,0,-5.03054	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:2:0,2:0:0:2:68:-4.30123,-0.60206,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/0:165:164,1:164:5812:1:36:0,-46.0717,-519.597	0/1:155:77,78:77:2739:78:2804:-113.517,0,-200.093	0/1:79:41,38:41:1425:38:1368:-55.4011,0,-104.762	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:181:122,59:122:4331:59:2120:-66.5487,0,-335.48	0/1:38:22,16:22:792:16:576:-21.6044,0,-60.1665	0/0:170:170,0:170:6014:0:0:0,-51.1751,-541.368	0/0:52:52,0:52:1850:0:0:0,-15.6536,-166.779	0/0:58:58,0:58:2043:0:0:0,-17.4597,-184.142	0/1:97:39,58:39:1357:58:2084:-88.0699,0,-93.2236	0/1:118:65,53:65:2315:53:1899:-76.4839,0,-173.089	0/1:155:109,46:109:3899:46:1644:-51.3994,0,-304.444	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/0:158:158,0:158:5635:0:0:0,-47.5627,-507.273	0/0:186:185,1:185:6594:1:36:0,-53.8084,-591.36	1/1:3:0,3:0:0:3:108:-6.38082,-0.90309,0	0/1:125:55,70:55:1963:70:2520:-108.024,0,-139.316	0/0:73:72,1:72:2547:1:32:0,-19.8163,-227.323	0/1:15:6,9:6:216:9:324:-14.1712,0,-15.2751	0/1:171:73,98:73:2607:98:3520:-152.071,0,-183.402	0/1:62:31,31:31:1112:31:1112:-46.3089,0,-81.7275	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:15:2,13:2:72:13:464:-22.5082,0,-2.32127	0/0:110:110,0:110:3908:0:0:0,-33.1133,-351.914	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.881	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:140:62,78:62:2198:78:2804:-112.555,0,-155.94	0/0:182:180,2:180:6426:2:72:0,-50.4576,-574.099	0/0:116:116,0:116:4123:0:0:0,-34.9195,-371.257	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.927	0/0:109:108,1:108:3838:1:36:0,-30.5334,-343.339	0/1:135:59,76:59:2075:76:2705:-117.873,0,-146.379	0/0:37:37,0:37:1299:0:0:0,-11.1381,-117.21	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/0:80:80,0:80:2838:0:0:0,-24.0824,-255.659	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4145	0/0:113:113,0:113:4025:0:0:0,-34.0164,-362.439	0/1:47:30,17:30:1076:17:612:-22.1413,0,-83.0044	0/0:209:209,0:209:7423:0:0:0,-62.9153,-668.12	0/0:163:163,0:163:5809:0:0:0,-49.0679,-522.925	0/0:164:164,0:164:5850:0:0:0,-49.3689,-526.613	0/0:111:107,4:107:3812:4:144:0,-24.9825,-334.845	1/1:3:0,3:0:0:3:108:-6.38082,-0.90309,0	0/0:107:106,0:106:3760:0:0:0,-31.9092,-338.24	0/1:181:79,102:79:2840:102:3660:-162.501,0,-201.351	0/0:322:322,0:322:11503:0:0:0,-96.9317,-1035.15	0/1:87:44,43:44:1554:43:1548:-63.0714,0,-113.487	0/0:72:72,0:72:2543:0:0:0,-21.6742,-229.119	0/1:76:31,45:31:1097:45:1616:-70.8069,0,-76.1597	0/0:113:112,0:112:3949:0:0:0,-33.7154,-355.243	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:59:34,25:34:1183:25:896:-33.7144,0,-89.0103	0/0:88:88,0:88:3110:0:0:0,-26.4906,-280.129	0/1:53:28,25:28:1000:25:900:-35.5478,0,-74.3608	0/1:123:66,57:66:2343:57:2035:-81.1227,0,-174.103	0/1:41:13,28:13:459:28:1008:-46.9952,0,-29.3019	0/0:110:110,0:110:3914:0:0:0,-33.1133,-352.454	0/0:94:94,0:94:3328:0:0:0,-28.2968,-299.738
chr08	806298	.	G	T	225166	PASS	AB=0.429627;ABP=253.318;AC=149;AF=0.801075;AN=186;AO=10694;CIGAR=1X;DP=14043;DPB=14043;DPRA=25.4293;EPP=23224.7;EPPR=1631.7;GTI=4;LEN=1;MEANALT=1.08696;MQM=59.9878;MQMR=58.5241;NS=93;NUMALT=1;ODDS=1.85486;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=378249;QR=119552;RO=3341;RPL=0;RPP=23224.7;RPPR=1631.7;RPR=10694;RUN=1;SAF=0;SAP=23224.7;SAR=10694;SRF=0;SRP=7257.9;SRR=3341;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:23,19:23:824:19:676:-48.5239,0,-61.8401	1/1:239:1,238:1:36:238:8456:-757.453,-68.3479,0	0/1:185:103,82:103:3688:82:2920:-207.345,0,-276.432	0/1:434:222,212:222:7964:212:7452:-540.087,0,-586.133	0/1:145:74,71:74:2634:71:2493:-180.974,0,-193.657	0/1:103:53,50:53:1904:50:1756:-127.317,0,-140.632	1/1:288:3,285:3:108:285:10071:-896.262,-76.6215,0	1/1:229:0,228:0:0:228:8045:-723.724,-68.6348,0	1/1:133:0,133:0:0:133:4696:-422.808,-40.037,0	1/1:114:0,114:0:0:114:4076:-367.027,-34.3174,0	1/1:100:0,100:0:0:100:3584:-322.767,-30.103,0	1/1:103:0,103:0:0:103:3644:-328.169,-31.0061,0	1/1:98:0,98:0:0:98:3464:-311.975,-29.5009,0	1/1:159:0,159:0:0:159:5636:-507.368,-47.8638,0	1/1:82:0,82:0:0:82:2909:-262.045,-24.6845,0	1/1:94:0,94:0:0:94:3341:-300.907,-28.2968,0	1/1:97:0,97:0:0:97:3448:-310.535,-29.1999,0	1/1:90:0,89:0:0:89:3160:-284.267,-26.7917,0	1/1:49:0,49:0:0:49:1736:-156.524,-14.7505,0	1/1:433:0,433:0:0:433:15330:-1379.43,-130.346,0	1/1:213:0,213:0:0:213:7564:-680.808,-64.1194,0	0/1:249:183,65:183:6554:65:2316:-133.697,0,-513.617	1/1:107:0,107:0:0:107:3804:-342.56,-32.2102,0	0/1:201:115,86:115:4124:86:2992:-209.003,0,-310.837	1/1:130:0,130:0:0:130:4596:-413.811,-39.1339,0	0/1:591:384,207:384:13774:207:7346:-483.284,0,-1059.28	0/1:286:165,121:165:5887:121:4300:-301.086,0,-443.848	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0	1/1:137:0,137:0:0:137:4813:-433.334,-41.2411,0	1/1:192:3,189:3:108:189:6691:-592.2,-47.7226,0	0/1:282:135,147:135:4822:147:5190:-382.353,0,-349.241	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:23:1,22:1:36:22:792:-68.007,-3.32542,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:200:0,200:0:0:200:7111:-640.055,-60.206,0	0/1:292:142,149:142:5066:149:5211:-381.178,0,-368.126	0/1:68:41,27:41:1476:27:972:-67.3279,0,-112.666	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:236:114,122:114:4080:122:4336:-319.376,0,-296.343	0/1:37:18,19:18:644:19:668:-49.3076,0,-47.1525	1/1:293:0,293:0:0:293:10360:-932.341,-88.2018,0	1/1:92:0,92:0:0:92:3243:-292.088,-27.6948,0	1/1:71:0,71:0:0:71:2520:-227.053,-21.3731,0	0/1:255:145,109:145:5183:109:3859:-270.836,0,-387.182	0/1:111:63,48:63:2264:48:1704:-120.232,0,-170.608	0/1:233:150,83:150:5357:83:2936:-194.337,0,-412.122	1/1:158:0,158:0:0:158:5566:-501.07,-47.5627,0	1/1:210:0,210:0:0:210:7448:-670.374,-63.2163,0	1/1:237:0,237:0:0:237:8344:-750.987,-71.3441,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:252:150,102:150:5379:102:3554:-244.213,0,-408.38	1/1:180:0,180:0:0:180:6385:-574.745,-54.1854,0	0/1:15:6,9:6:203:9:316:-24.2634,0,-14.0857	0/1:266:150,116:150:5337:116:4092:-288.398,0,-400.391	0/1:80:50,30:50:1784:30:1052:-70.9081,0,-136.76	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.1542	1/1:117:0,117:0:0:117:4120:-370.989,-35.2205,0	1/1:169:0,169:0:0:169:6013:-541.277,-50.8741,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:279:203,76:203:7279:76:2688:-158.179,0,-570.057	1/1:270:0,270:0:0:270:9553:-859.74,-81.2781,0	1/1:65:0,65:0:0:65:2309:-208.069,-19.567,0	.:.:.:.:.:.:.:.	1/1:310:6,304:6:216:304:10761:-948.617,-73.5288,0	0/1:160:113,47:113:4022:47:1672:-102.602,0,-314.005	1/1:35:0,35:0:0:35:1232:-111.184,-10.5361,0	1/1:120:0,120:0:0:120:4206:-378.727,-36.1236,0	1/1:130:0,130:0:0:130:4644:-418.123,-39.1339,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:95:0,95:0:0:95:3337:-300.551,-28.5979,0	0/1:95:51,44:51:1819:44:1560:-112.094,0,-135.393	1/1:357:0,357:0:0:357:12475:-1122.63,-107.468,0	1/1:221:0,221:0:0:221:7816:-703.483,-66.5276,0	1/1:208:0,208:0:0:208:7369:-663.267,-62.6142,0	1/1:65:4,60:4:144:60:2116:-177.392,-6.31213,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:188:2,186:2:72:186:6545:-582.286,-49.7569,0	0/1:259:137,121:137:4895:121:4276:-306.998,0,-362.641	1/1:426:0,426:0:0:426:14933:-1343.73,-128.239,0	0/1:130:60,70:60:2145:70:2500:-186.119,0,-154.182	1/1:120:0,120:0:0:120:4256:-383.223,-36.1236,0	0/1:112:47,65:47:1680:65:2316:-174.984,0,-117.772	1/1:131:0,131:0:0:131:4668:-420.283,-39.4349,0	1/1:46:0,46:0:0:46:1624:-146.449,-13.8474,0	0/1:82:38,44:38:1368:44:1576:-117.447,0,-98.7364	1/1:88:0,88:0:0:88:3120:-281.029,-26.4906,0	0/1:88:39,49:39:1404:49:1748:-131.114,0,-100.169	0/1:143:79,64:79:2824:64:2280:-162.415,0,-211.352	0/1:66:40,26:40:1440:26:932:-64.3309,0,-110.03	1/1:277:0,276:0:0:276:9785:-880.244,-83.0843,0	1/1:140:0,140:0:0:140:4961:-446.643,-42.1442,0
chr08	806318	.	T	A	58543.5	PASS	AB=0.566251;ABP=225.996;AC=37;AF=0.198925;AN=186;AO=3337;CIGAR=1X;DP=14222;DPB=14222;DPRA=1.18758;EPP=7249.21;EPPR=23637.3;GTI=4;LEN=1;MEANALT=1.02326;MQM=58.5088;MQMR=59.9872;NS=93;NUMALT=1;ODDS=0.467683;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119443;QR=387771;RO=10884;RPL=3337;RPP=7249.21;RPPR=23637.3;RPR=0;RUN=1;SAF=0;SAP=7249.21;SAR=3337;SRF=0;SRP=23637.3;SRR=10884;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:19,24:19:672:24:856:-64.4168,0,-47.8622	0/0:239:238,1:238:8423:1:36:0,-68.3479,-754.475	0/1:184:82,102:82:2918:102:3660:-274.214,0,-207.462	0/1:437:214,223:214:7597:223:7980:-586.67,0,-552.216	0/1:148:75,73:75:2688:73:2616:-191.135,0,-197.612	0/1:104:51,53:51:1794:53:1904:-140.331,0,-130.431	0/0:297:294,3:294:10564:3:108:0,-79.3307,-940.59	0/0:229:229,0:229:8160:0:0:0,-68.9359,-734.411	0/0:141:141,0:141:5015:0:0:0,-42.4452,-451.495	0/0:114:114,0:114:4092:0:0:0,-34.3174,-368.464	0/0:103:103,0:103:3670:0:0:0,-31.0061,-330.501	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.56	0/0:100:100,0:100:3566:0:0:0,-30.103,-321.144	0/0:164:164,0:164:5870:0:0:0,-49.3689,-528.407	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.552	0/0:94:94,0:94:3327:0:0:0,-28.2968,-299.645	0/0:97:97,0:97:3367:0:0:0,-29.1999,-303.242	0/0:91:91,0:91:3219:0:0:0,-27.3937,-289.93	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.043	0/0:442:442,0:442:15847:0:0:0,-133.055,-1425.91	0/0:224:224,0:224:7954:0:0:0,-67.4307,-715.88	0/1:251:65,186:65:2310:186:6652:-521.923,0,-132.599	0/0:109:109,0:109:3860:0:0:0,-32.8123,-347.592	0/1:202:87,115:87:3109:115:4109:-309.186,0,-219.227	0/0:131:131,0:131:4682:0:0:0,-39.4349,-421.538	0/1:597:214,383:214:7545:383:13692:-1049.87,0,-499.373	0/1:291:122,169:122:4369:169:6052:-457.183,0,-305.782	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:138:138,0:138:4922:0:0:0,-41.5421,-443.129	0/0:198:195,3:195:6944:3:108:0,-49.5288,-614.947	0/1:282:148,134:148:5286:134:4792:-346.541,0,-390.982	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:24:23,1:23:828:1:36:0,-3.62644,-71.245	0/1:10:7,3:7:244:3:108:-7.06487,0,-19.2891	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:202:202,0:202:7192:0:0:0,-60.8081,-647.333	0/1:295:154,140:154:5468:140:5028:-363.802,0,-403.383	0/1:65:25,40:25:900:40:1440:-110.331,0,-61.7541	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:239:126,113:126:4479:113:4031:-291.03,0,-331.33	0/1:36:18,18:18:648:18:648:-47.8148,0,-47.8148	0/0:298:298,0:298:10637:0:0:0,-89.7069,-957.235	0/0:94:94,0:94:3335:0:0:0,-28.2968,-300.363	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:252:109,143:109:3856:143:5121:-381.854,0,-271.373	0/1:115:51,64:51:1787:64:2298:-172.463,0,-126.488	0/1:230:82,148:82:2899:148:5297:-407.626,0,-191.906	0/0:160:160,0:160:5722:0:0:0,-48.1648,-515.093	0/0:210:210,0:210:7509:0:0:0,-63.2163,-675.848	0/0:241:241,0:241:8600:0:0:0,-72.5482,-773.991	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/1:254:103,151:103:3681:151:5416:-411.105,0,-255.029	0/0:180:180,0:180:6382:0:0:0,-54.1854,-574.466	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:272:119,153:119:4209:153:5465:-410.097,0,-297.106	0/1:77:30,47:30:1065:47:1674:-127.768,0,-72.9804	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:16:8,8:8:269:8:288:-21.1542,0,-19.7196	0/0:116:116,0:116:4111:0:0:0,-34.9195,-370.173	0/0:176:176,0:176:6317:0:0:0,-52.9813,-568.617	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:282:76,206:76:2721:206:7382:-578.443,0,-160.241	0/0:279:279,0:279:9934:0:0:0,-83.9874,-893.994	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.985	.:.:.:.:.:.:.:.	0/0:313:308,5:308:10910:5:172:0,-78.405,-965.978	0/1:159:48,111:48:1698:111:3979:-310.436,0,-105.238	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/0:124:124,0:124:4445:0:0:0,-37.3277,-400.218	0/0:131:131,0:131:4666:0:0:0,-39.4349,-420.1	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:97:97,0:97:3469:0:0:0,-29.1999,-312.42	0/1:95:44,51:44:1565:51:1817:-135.212,0,-112.542	0/0:369:369,0:369:13125:0:0:0,-111.08,-1181.05	0/0:226:226,0:226:8068:0:0:0,-68.0328,-726.133	0/0:210:210,0:210:7377:0:0:0,-63.2163,-663.98	0/0:66:62,4:62:2205:4:144:0,-6.55436,-185.395	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:194:192,2:192:6844:2:72:0,-51.5631,-609.188	0/1:260:126,134:126:4491:134:4755:-349.838,0,-326.087	0/0:435:435,0:435:15505:0:0:0,-130.948,-1395.15	0/1:128:70,58:70:2516:58:2088:-149.658,0,-188.16	0/0:124:124,0:124:4456:0:0:0,-37.3277,-401.209	0/1:112:64,48:64:2259:48:1720:-121.37,0,-169.851	0/0:133:133,0:133:4757:0:0:0,-40.037,-428.285	0/0:45:45,0:45:1560:0:0:0,-13.5463,-140.683	0/1:82:44,38:44:1584:38:1364:-98.3763,0,-118.167	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:88:49,39:49:1752:39:1400:-99.8085,0,-131.473	0/1:145:66,79:66:2357:79:2832:-211.469,0,-168.738	0/1:67:26,41:26:936:41:1475:-112.877,0,-64.3905	0/0:278:278,0:278:9939:0:0:0,-83.6863,-894.44	0/0:141:141,0:141:5042:0:0:0,-42.4452,-453.922
chr08	824727	.	G	T	10532	PASS	AB=0.380224;ABP=247.495;AC=33;AF=0.177419;AN=186;AO=750;CIGAR=1X;DP=6897;DPB=6897;DPRA=0.778189;EPP=1631.61;EPPR=13132.6;GTI=3;LEN=1;MEANALT=1;MQM=58.7453;MQMR=59.9798;NS=93;NUMALT=1;ODDS=3.30206;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26870;QR=220183;RO=6146;RPL=750;RPP=1631.61;RPPR=13132.6;RPR=0;RUN=1;SAF=0;SAP=1631.61;SAR=750;SRF=0;SRP=13348.9;SRR=6146;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:38,1:38:1360:1:36:0,-8.1429,-119.103	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/1:70:49,21:49:1764:21:756:-47.2568,0,-137.972	0/1:163:103,60:103:3695:60:2160:-145.553,0,-283.683	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.7684	0/1:26:18,8:18:631:8:288:-18.4308,0,-49.2889	0/0:188:188,0:188:6748:0:0:0,-56.5936,-607.392	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/0:115:115,0:115:4091:0:0:0,-34.6184,-368.353	0/0:91:91,0:91:3219:0:0:0,-27.3937,-289.932	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:118:118,0:118:4224:0:0:0,-35.5215,-380.34	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:61:61,0:61:2187:0:0:0,-18.3628,-197.095	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.614	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:179:178,0:178:6392:0:0:0,-53.5833,-575.006	0/0:174:173,1:173:6195:1:36:0,-48.7809,-554.048	0/1:37:25,12:25:896:12:432:-28.0476,0,-69.8222	0/0:140:140,0:140:5011:0:0:0,-42.1442,-451.136	0/1:75:57,18:57:2052:18:648:-36.0746,0,-162.374	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:112:73,39:73:2616:39:1400:-92.5662,0,-201.972	0/1:70:48,22:48:1712:22:792:-50.4637,0,-133.294	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:124:124,0:124:4444:0:0:0,-37.3277,-400.129	0/0:91:90,1:90:3236:1:36:0,-23.7955,-287.862	0/1:76:55,21:55:1963:21:752:-44.9516,0,-154.066	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:3,2:3:104:2:68:-4.87877,0,-8.19766	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.965	0/1:79:64,15:64:2287:15:539:-25.0239,0,-182.31	0/1:41:19,22:19:684:22:792:-59.2434,0,-49.5481	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:80:45,35:45:1620:35:1260:-89.5773,0,-122.008	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:44:34,10:34:1220:10:356:-19.1359,0,-96.8615	0/1:63:53,10:53:1889:10:360:-13.6098,0,-151.322	0/1:106:67,39:67:2396:39:1400:-94.3616,0,-183.988	0/0:105:105,0:105:3767:0:0:0,-31.6081,-339.228	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:164:164,0:164:5892:0:0:0,-49.3689,-530.355	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:66:52,14:52:1872:14:504:-25.7457,0,-148.891	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:8:3,5:3:108:5:180:-13.9989,0,-7.66693	0/1:88:65,23:65:2328:23:820:-47.6315,0,-183.288	0/1:59:37,22:37:1309:22:792:-53.8449,0,-100.349	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:76:75,1:75:2700:1:36:0,-19.28,-239.645	.:.:.:.:.:.:.:.	0/1:133:62,71:62:2215:71:2525:-187.42,0,-159.577	0/0:141:141,0:141:5038:0:0:0,-42.4452,-453.566	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.569	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/0:144:144,0:144:5160:0:0:0,-43.3483,-464.54	0/1:90:32,58:32:1144:58:2050:-157.106,0,-76.1768	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3435	0/0:153:153,0:153:5492:0:0:0,-46.0576,-494.405	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:128:128,0:128:4575:0:0:0,-38.5318,-411.915	0/1:77:34,43:34:1220:43:1529:-114.613,0,-86.9275	0/0:176:176,0:176:6305:0:0:0,-52.9813,-567.54	0/0:143:143,0:143:5117:0:0:0,-43.0473,-460.671	0/0:79:79,0:79:2818:0:0:0,-23.7814,-253.857	0/0:60:60,0:60:2138:0:0:0,-18.0618,-192.687	0/1:14:3,11:3:108:11:396:-31.6889,0,-5.86075	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.229	0/1:66:43,23:43:1544:23:828:-54.9475,0,-119.379	0/0:222:222,0:222:7957:0:0:0,-66.8287,-716.15	0/1:37:27,10:27:972:10:356:-21.1859,0,-76.6598	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:25:14,11:14:504:11:396:-28.3868,0,-38.1723	0/0:99:99,0:99:3527:0:0:0,-29.802,-317.639	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:54:35,19:35:1256:19:680:-45.1187,0,-97.0897	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.736	0/1:32:18,14:18:644:14:504:-36.0651,0,-48.6576	0/1:90:50,40:50:1772:40:1440:-102.749,0,-132.668	0/1:46:15,31:15:536:31:1111:-86.2527,0,-34.7274	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663
chr08	824732	.	G	A	10163.6	PASS	AB=0.373525;ABP=273.803;AC=33;AF=0.177419;AN=186;AO=734;CIGAR=1X;DP=6884;DPB=6884;DPRA=0.820774;EPP=1596.87;EPPR=13247;GTI=3;LEN=1;MEANALT=1.02564;MQM=58.7888;MQMR=59.9849;NS=93;NUMALT=1;ODDS=5.53759;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26330;QR=219531;RO=6143;RPL=734;RPP=1596.87;RPPR=13247;RPR=0;RUN=1;SAF=0;SAP=1596.87;SAR=734;SRF=0;SRP=13342.4;SRR=6143;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:36,1:36:1287:1:36:0,-7.54084,-112.536	0/0:85:85,0:85:3030:0:0:0,-25.5875,-272.93	0/1:71:50,21:50:1796:21:752:-46.5968,0,-140.549	0/1:162:104,58:104:3723:58:2080:-138.658,0,-286.504	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0475	0/1:27:19,8:19:671:8:288:-18.1298,0,-52.588	0/0:188:188,0:188:6733:0:0:0,-56.5936,-606.042	0/0:131:131,0:131:4679:0:0:0,-39.4349,-421.272	0/0:112:112,0:112:3999:0:0:0,-33.7154,-360.078	0/0:90:90,0:90:3184:0:0:0,-27.0927,-286.784	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:117:117,0:117:4191:0:0:0,-35.2205,-377.371	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.054	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:183:182,0:182:6528:0:0:0,-54.7875,-587.234	0/0:177:176,1:176:6269:1:36:0,-49.684,-560.708	0/1:37:25,12:25:896:12:432:-28.0476,0,-69.8222	0/0:142:140,1:140:5010:1:36:0,-39.2068,-447.447	0/1:74:57,17:57:2044:17:612:-33.1372,0,-161.956	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:109:72,37:72:2576:37:1332:-87.3525,0,-199.277	0/1:71:48,23:48:1719:23:824:-53.0403,0,-133.622	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:125:124,0:124:4423:0:0:0,-37.3277,-397.883	0/0:90:89,1:89:3167:1:36:0,-23.4944,-281.654	0/1:75:56,19:56:1991:19:680:-38.8095,0,-156.886	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:3,2:3:108:2:72:-5.25721,0,-8.57002	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:121:121,0:121:4334:0:0:0,-36.4246,-390.234	0/1:79:64,15:64:2296:15:539:-25.0239,0,-183.12	0/1:41:19,22:19:680:22:792:-59.2434,0,-49.1869	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:79:45,34:45:1612:34:1216:-85.9194,0,-121.589	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:123:123,0:123:4373:0:0:0,-37.0267,-393.745	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.006	0/1:43:33,10:33:1184:10:360:-19.8,0,-93.924	0/1:63:53,10:53:1900:10:351:-12.7929,0,-152.313	0/1:101:64,37:64:2279:37:1332:-89.75,0,-174.968	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.029	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.484	0/0:163:163,0:163:5835:0:0:0,-49.0679,-525.248	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:68:54,14:54:1927:14:504:-25.1436,0,-153.236	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/1:8:3,5:3:108:5:180:-13.9989,0,-7.66693	0/1:88:66,22:66:2355:22:792:-45.115,0,-185.716	0/1:62:39,23:39:1392:23:828:-56.1803,0,-106.915	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:9:4,5:4:136:5:180:-13.8428,0,-9.86627	0/0:62:61,0:61:2176:0:0:0,-18.3628,-195.747	0/0:78:77,1:77:2755:1:36:0,-19.8821,-244.593	.:.:.:.:.:.:.:.	0/1:131:62,69:62:2220:69:2480:-183.975,0,-160.63	0/0:141:141,0:141:5048:0:0:0,-42.4452,-454.465	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.919	0/0:72:72,0:72:2555:0:0:0,-21.6742,-230.201	0/0:142:142,0:142:5070:0:0:0,-42.7463,-456.444	0/1:89:33,56:33:1180:56:1997:-153.115,0,-79.7164	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:155:155,0:155:5532:0:0:0,-46.6596,-498.007	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/0:129:128,0:128:4555:0:0:0,-38.5318,-409.759	0/1:72:33,39:33:1184:39:1396:-104.199,0,-85.1942	0/0:175:175,0:175:6259:0:0:0,-52.6802,-563.405	0/0:144:144,0:144:5167:0:0:0,-43.3483,-465.168	0/0:80:80,0:80:2836:0:0:0,-24.0824,-255.476	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:14:3,11:3:108:11:396:-31.6889,0,-5.86075	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:65:42,23:42:1508:23:824:-54.8914,0,-116.445	0/0:222:221,0:221:7893:0:0:0,-66.5276,-710.036	0/1:37:27,10:27:968:10:356:-21.2028,0,-76.2993	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/1:25:14,11:14:504:11:396:-28.3868,0,-38.1723	0/0:99:98,0:98:3487:0:0:0,-29.5009,-313.681	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:54:35,19:35:1252:19:680:-45.1187,0,-96.7295	0/0:89:88,1:88:3164:1:36:0,-23.1934,-281.372	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/1:90:50,40:50:1787:40:1427:-101.579,0,-134.019	0/1:46:15,31:15:536:31:1116:-86.6659,0,-34.7274	0/0:99:99,0:99:3535:0:0:0,-29.802,-318.359	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.773
chr08	826671	.	C	G	24983.6	PASS	AB=0.550511;ABP=61.5809;AC=36;AF=0.193548;AN=186;AO=1475;CIGAR=1X;DP=6013;DPB=6013;DPRA=1.2873;EPP=3205.93;EPPR=9839.78;GTI=3;LEN=1;MEANALT=1.07692;MQM=59.9905;MQMR=59.9874;NS=93;NUMALT=1;ODDS=0.415208;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52233;QR=159476;RO=4534;RPL=1473;RPP=3188.58;RPPR=9787.76;RPR=2;RUN=1;SAF=1473;SAP=3188.58;SAR=2;SRF=4528;SRP=9796.42;SRR=6;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:17,25:17:582:25:868:-65.7897,0,-40.0581	0/0:34:33,1:33:1158:1:36:0,-6.63674,-100.927	0/1:143:62,81:62:2166:81:2864:-214.95,0,-152.157	0/1:121:52,69:52:1811:69:2464:-185.59,0,-126.843	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:15:1,14:1:32:14:496:-41.7749,-1.31614,0	0/0:63:63,0:63:2223:0:0:0,-18.9649,-200.332	0/0:70:70,0:70:2471:0:0:0,-21.0721,-222.642	0/0:50:50,0:50:1756:0:0:0,-15.0515,-158.321	0/0:43:42,1:42:1474:1:32:0,-9.74498,-129.754	0/0:59:59,0:59:2062:0:0:0,-17.7608,-185.851	0/0:88:88,0:88:3049:0:0:0,-26.4906,-274.64	0/0:59:59,0:59:2075:0:0:0,-17.7608,-187.018	0/0:47:47,0:47:1629:0:0:0,-14.1484,-146.893	0/0:61:61,0:61:2170:0:0:0,-18.3628,-195.565	0/0:71:71,0:71:2496:0:0:0,-21.3731,-224.892	0/0:22:22,0:22:767:0:0:0,-6.62266,-69.3494	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.457	0/0:112:112,0:112:3952:0:0:0,-33.7154,-355.872	0/0:63:63,0:63:2225:0:0:0,-18.9649,-200.513	0/1:65:17,48:17:612:48:1701:-133.807,0,-35.8465	0/0:61:61,0:61:2128:0:0:0,-18.3628,-191.787	0/1:65:27,38:27:925:38:1360:-103.134,0,-63.9898	0/0:56:56,0:56:1947:0:0:0,-16.8577,-175.503	0/1:109:44,65:44:1533:65:2284:-173.008,0,-105.445	0/1:194:95,98:95:3333:98:3468:-253.874,0,-241.73	0/0:28:28,0:28:988:0:0:0,-8.42884,-89.2339	0/0:164:164,0:164:5774:0:0:0,-49.3689,-519.78	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.789	0/1:68:35,33:35:1247:33:1176:-85.6777,0,-92.064	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.1598	0/0:164:164,0:164:5744:0:0:0,-49.3689,-517.084	0/1:94:37,57:37:1306:57:2048:-156.284,0,-89.5431	0/1:67:43,24:43:1500:24:852:-56.8314,0,-115.121	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:97:39,58:39:1388:58:2048:-155.39,0,-96.019	0/1:51:31,20:31:1097:20:705:-48.4203,0,-83.6855	0/0:70:70,0:70:2475:0:0:0,-21.0721,-223.004	0/0:43:43,0:43:1505:0:0:0,-12.9443,-135.74	0/0:48:48,0:48:1682:0:0:0,-14.4494,-151.665	0/1:66:28,38:28:958:38:1333:-100.4,0,-66.6582	0/1:72:39,33:39:1371:33:1175:-84.3828,0,-102.014	0/1:103:39,64:39:1383:64:2267:-173.286,0,-93.762	0/0:65:65,0:65:2248:0:0:0,-19.5669,-202.581	0/0:37:37,0:37:1295:0:0:0,-11.1381,-116.848	0/0:82:82,0:82:2889:0:0:0,-24.6845,-260.2	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:87:35,52:35:1256:52:1864:-141.85,0,-87.1557	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:135:65,70:65:2253:70:2487:-183.444,0,-162.389	0/1:32:24,8:24:856:8:288:-16.6344,0,-67.7281	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:48:48,0:48:1646:0:0:0,-14.4494,-148.421	0/0:111:111,0:111:3911:0:0:0,-33.4143,-352.186	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:132:83,48:83:2949:48:1692:-112.77,0,-225.849	0/0:72:72,0:72:2552:0:0:0,-21.6742,-229.931	0/0:48:48,0:48:1672:0:0:0,-14.4494,-150.764	0/0:53:50,3:50:1748:3:108:0,-5.87942,-147.526	0/0:51:51,0:51:1797:0:0:0,-15.3525,-162.01	0/1:108:31,77:31:1080:77:2733:-213.701,0,-64.9945	0/0:46:46,0:46:1619:0:0:0,-13.8474,-145.998	0/0:49:49,0:49:1723:0:0:0,-14.7505,-155.222	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:63:63,0:63:2155:0:0:0,-18.9649,-194.212	0/1:103:48,55:48:1684:55:1967:-146.299,0,-120.838	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/0:167:167,0:167:5888:0:0:0,-50.272,-530.036	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.73	0/1:17:4,13:4:144:13:454:-36.0742,0,-8.19611	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:110:52,58:52:1806:58:2047:-151.386,0,-129.704	0/0:124:124,0:124:4350:0:0:0,-37.3277,-391.68	0/1:105:49,56:49:1739:56:1969:-145.876,0,-125.186	0/0:54:54,0:54:1909:0:0:0,-16.2556,-172.085	0/1:48:20,28:20:716:28:996:-75.5054,0,-50.3183	0/0:109:108,1:108:3815:1:36:0,-29.214,-339.951	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:62:35,27:35:1243:27:959:-67.9615,0,-93.51	0/0:72:72,0:72:2536:0:0:0,-21.6742,-228.491	0/1:79:31,47:31:1116:47:1655:-125.397,0,-76.9115	0/1:139:70,69:70:2440:69:2411:-175.402,0,-178.01	0/1:75:13,62:13:464:62:2170:-172.987,0,-19.5203	0/0:64:63,0:63:2214:0:0:0,-18.9649,-199.165	0/0:84:84,0:84:2979:0:0:0,-25.2865,-268.344
chr08	826736	.	A	G	94330.3	PASS	AB=0.441996;ABP=68.0022;AC=148;AF=0.795699;AN=186;AO=4372;CIGAR=1X;DP=5640;DPB=5640;DPRA=12.3736;EPP=9392.74;EPPR=2732.58;GTI=1;LEN=1;MEANALT=1.02198;MQM=59.9755;MQMR=59.9455;NS=93;NUMALT=1;ODDS=1.83835;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156220;QR=45330;RO=1265;RPL=4360;RPP=9392.74;RPPR=2732.58;RPR=12;RUN=1;SAF=0;SAP=9496.69;SAR=4372;SRF=0;SRP=2749.92;SRR=1265;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:2,9:2:72:9:316:-25.432,0,-3.52539	1/1:102:0,102:0:0:102:3637:-327.534,-30.7051,0	0/1:74:27,47:27:972:47:1692:-130.291,0,-65.5217	0/1:119:63,56:63:2245:56:2004:-144.803,0,-166.47	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	1/1:64:0,64:0:0:64:2300:-207.243,-19.2659,0	1/1:68:0,68:0:0:68:2420:-218.057,-20.47,0	1/1:65:1,64:1:36:64:2281:-201.943,-15.9687,0	1/1:86:0,86:0:0:86:3064:-275.984,-25.8886,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:56:0,56:0:0:56:1991:-179.464,-16.8577,0	1/1:59:1,58:1:36:58:2078:-183.754,-14.2246,0	1/1:85:1,84:1:36:84:2999:-266.543,-21.9893,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:74:0,74:0:0:74:2649:-238.655,-22.2762,0	1/1:123:1,122:1:36:122:4329:-386.187,-33.4284,0	0/1:22:15,7:15:536:7:252:-16.4063,0,-41.9522	1/1:53:0,53:0:0:53:1879:-169.388,-15.9546,0	0/1:112:68,44:68:2429:44:1569:-107.784,0,-185.149	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:194:108,86:108:3880:86:3063:-217.5,0,-290.924	0/1:84:48,36:48:1713:36:1288:-90.9371,0,-129.167	1/1:27:1,26:1:36:26:932:-80.6006,-4.52954,0	1/1:93:0,93:0:0:93:3307:-297.847,-27.9958,0	1/1:137:5,132:5:176:132:4714:-408.236,-25.0561,0	0/1:74:36,38:36:1296:38:1364:-100.784,0,-94.6677	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:91:0,91:0:0:91:3247:-292.451,-27.3937,0	0/1:139:86,53:86:3096:53:1896:-129.075,0,-237.022	0/1:46:22,24:22:780:24:847:-62.7013,0,-56.6757	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:94:54,40:54:1940:40:1413:-99.1693,0,-146.579	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.5313	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	1/1:47:0,47:0:0:47:1672:-150.767,-14.1484,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2753	0/1:72:38,34:38:1364:34:1215:-87.9816,0,-101.387	0/1:95:49,46:49:1764:46:1640:-119.267,0,-130.446	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	1/1:98:0,98:0:0:98:3524:-317.368,-29.5009,0	1/1:61:0,61:0:0:61:2176:-196.102,-18.3628,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:72:44,28:44:1580:28:1008:-69.3622,0,-120.817	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:101:63,38:63:2256:38:1360:-92.2966,0,-172.899	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	.:.:.:.:.:.:.:.	0/1:25:18,7:18:629:7:252:-15.5032,0,-49.408	1/1:65:0,65:0:0:65:2313:-208.429,-19.567,0	1/1:100:0,100:0:0:100:3588:-323.126,-30.103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:132:68,64:68:2440:64:2298:-167.343,0,-180.119	1/1:104:2,102:2:72:102:3656:-322.407,-24.4704,0	1/1:50:0,50:0:0:50:1773:-159.851,-15.0515,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:90:0,90:0:0:90:3179:-286.334,-27.0927,0	0/1:74:54,20:54:1921:20:720:-42.8526,0,-150.884	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:79:0,79:0:0:79:2824:-254.399,-23.7814,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:67:0,65:0:0:65:2316:-208.414,-19.567,0	0/1:43:26,17:26:917:17:595:-40.9324,0,-69.8921	1/1:110:0,109:0:0:109:3911:-351.97,-32.8123,0	1/1:90:0,90:0:0:90:3236:-291.461,-27.0927,0	1/1:36:0,36:0:0:36:1283:-115.773,-10.8371,0	1/1:76:2,74:2:72:74:2643:-231.279,-16.0416,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:62:34,28:34:1209:28:1006:-72.1924,0,-90.4503	1/1:110:0,110:0:0:110:3956:-356.23,-33.1133,0	0/1:100:53,47:53:1908:47:1674:-120.844,0,-141.895	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	0/1:67:37,30:37:1332:30:1072:-76.6234,0,-100.013	1/1:112:0,112:0:0:112:4007:-360.818,-33.7154,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:61:34,27:34:1220:27:957:-68.0819,0,-91.744	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:38:19,19:19:675:19:684:-50.4512,0,-49.6378	0/1:115:63,52:63:2264:52:1854:-132.521,0,-169.404	0/1:46:35,11:35:1260:11:396:-22.1354,0,-99.8581	1/1:77:0,77:0:0:77:2742:-247.022,-23.1793,0	1/1:81:0,81:0:0:81:2883:-259.706,-24.3834,0
chr08	826738	.	TCAACAACAACCC	TCAACAACAATCC,TCAACAACCC	120491	PASS	AB=0.455266,0.535415;ABP=40.3119,26.3885;AC=147,39;AF=0.790323,0.209677;AN=186;AO=4352,1173;CIGAR=10M1X2M,1M3D9M;DP=5588;DPB=5315.77;DPRA=13.2714,1.15801;EPP=9366.6,2532.81;EPPR=11.6962;GTI=1;LEN=1,3;MEANALT=2.04444,2.58537;MQM=59.9818,59.9693;MQMR=60;NS=93;NUMALT=2;ODDS=2.60468;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=70.6667,70.6667;PQR=70.6667;PRO=2;QA=155691,40956;QR=141;RO=4;RPL=4342,1171;RPP=9366.6,2532.81;RPPR=11.6962;RPR=10,2;RUN=1,1;SAF=0,0;SAP=9453.26,2550.15;SAR=4352,1173;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/2:11:0,8,2:0:0:8,2:288,72:-29.4658,-5.96806,-3.55982,-23.5881,0,-22.986	1/1:102:0,102,0:0:0:102,0:3649,0:-328.607,-30.7051,0,-328.607,-30.7051,-328.607	1/2:73:0,48,25:0:0:48,25:1728,847:-210.02,-69.0105,-54.561,-141.356,0,-133.83	1/2:114:0,57,57:0:0:57,57:2040,1962:-326.042,-159.684,-142.525,-166.709,0,-149.55	1/2:16:0,9,6:0:0:9,6:324,208:-43.3381,-16.895,-14.1857,-26.4368,0,-24.6306	1/2:28:0,15,13:0:0:15,13:540,460:-81.8865,-37.822,-33.3065,-44.4211,0,-40.5077	1/1:65:0,63,0:0:0:63,0:2241,0:-201.641,-18.9649,0,-201.641,-18.9649,-201.641	1/1:68:0,68,0:0:0:68,0:2417,0:-217.785,-20.47,0,-217.785,-20.47,-217.785	1/1:63:0,59,1:0:0:59,1:2124,36:-191.075,-17.7608,0,-188.137,-14.8211,-187.836	1/1:85:0,81,0:0:0:81,0:2896,0:-260.561,-24.3834,0,-260.561,-24.3834,-260.561	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/1:57:0,56,0:0:0:56,0:1985,0:-178.563,-16.8577,0,-178.563,-16.8577,-178.563	1/1:58:0,58,0:0:0:58,0:2084,0:-187.83,-17.4597,0,-187.83,-17.4597,-187.83	1/1:85:1,81,0:1:36:81,0:2912,0:-258.735,-21.4394,0,-259.036,-24.3834,-261.974	1/1:49:0,49,0:0:0:49,0:1760,0:-158.684,-14.7505,0,-158.684,-14.7505,-158.684	1/1:42:2,40,0:2:69:40,0:1434,0:-122.805,-6.0906,0,-123.407,-12.0412,-129.012	1/1:73:0,73,0:0:0:73,0:2624,0:-236.407,-21.9752,0,-236.407,-21.9752,-236.407	1/1:45:0,45,0:0:0:45,0:1601,0:-144.378,-13.5464,0,-144.378,-13.5464,-144.378	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:73:0,73,0:0:0:73,0:2616,0:-235.636,-21.9752,0,-235.636,-21.9752,-235.636	1/1:125:0,123,1:0:0:123,1:4412,36:-396.866,-37.0267,0,-393.928,-34.1157,-393.627	1/2:19:0,7,12:0:0:7,12:252,428:-55.8096,-35.2464,-33.1392,-20.9217,0,-17.3094	1/1:54:0,54,0:0:0:54,0:1940,0:-174.876,-16.2556,0,-174.876,-16.2556,-174.876	1/2:106:0,42,64:0:0:42,64:1508,2211:-303.004,-179.986,-167.342,-123.371,0,-104.105	1/2:13:0,11,2:0:0:11,2:381,57:-35.8262,-4.81125,-1.49992,-31.3093,0,-30.7072	1/2:189:0,88,100:0:0:88,100:3164,3513:-544.138,-286,-259.51,-258.281,0,-228.178	1/2:80:0,36,43:0:0:36,43:1290,1502:-227.378,-122.165,-111.328,-105.207,0,-92.2626	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/1:93:0,92,0:0:0:92,0:3266,0:-293.799,-27.6948,0,-293.799,-27.6948,-293.799	1/1:136:0,131,5:0:0:131,5:4688,180:-421.721,-39.4349,0,-407.034,-24.388,-405.529	1/2:73:0,38,35:0:0:38,35:1364,1180:-207.231,-95.9573,-84.5182,-111.622,0,-101.086	2/2:4:0,0,3:0:0:0,3:0,104:-9.45868,-9.45868,-9.45868,-0.90309,-0.90309,0	1/1:3:0,3,0:0:0:3,0:108,0:-10.04,-0.90309,0,-10.04,-0.90309,-10.04	2/2:4:0,0,4:0:0:0,4:0,132:-12.2065,-12.2065,-12.2065,-1.20412,-1.20412,0	1/1:4:0,4,0:0:0:4,0:129,0:-11.9277,-1.20412,0,-11.9277,-1.20412,-11.9277	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:93:0,92,0:0:0:92,0:3294,0:-296.312,-27.6948,0,-296.312,-27.6948,-296.312	1/2:136:0,53,83:0:0:53,83:1908,2922:-393.914,-238.228,-222.273,-156.043,0,-131.057	1/2:45:0,22,22:0:0:22,22:792,768:-127.087,-62.4584,-55.8357,-64.6232,0,-58.0005	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:89:0,38,51:0:0:38,51:1368,1770:-255.854,-144.227,-132.787,-111.982,0,-96.6292	1/2:22:0,10,9:0:0:10,9:360,315:-55.0298,-25.6481,-22.6378,-29.4023,0,-26.6931	1/1:49:0,49,0:0:0:49,0:1756,0:-158.324,-14.7505,0,-158.324,-14.7505,-158.324	1/1:47:0,47,0:0:0:47,0:1684,0:-151.847,-14.1484,0,-151.847,-14.1484,-151.847	1/1:47:0,47,0:0:0:47,0:1692,0:-152.567,-14.1484,0,-152.567,-14.1484,-152.567	1/2:37:0,20,17:0:0:20,17:720,580:-106.163,-47.4046,-41.384,-59.1082,0,-53.9907	1/2:72:0,33,37:0:0:33,37:1178,1290:-201.013,-104.971,-95.0366,-96.1047,0,-84.9665	1/2:96:0,47,48:0:0:47,48:1680,1689:-274.478,-137.622,-123.474,-136.986,0,-122.537	1/1:69:0,69,0:0:0:69,0:2461,0:-221.743,-20.7711,0,-221.743,-20.7711,-221.743	1/1:98:0,97,0:0:0:97,0:3472,0:-312.332,-29.1999,0,-312.332,-29.1999,-312.332	1/1:61:0,61,0:0:0:61,0:2173,0:-195.83,-18.3628,0,-195.83,-18.3628,-195.83	2/2:6:0,0,6:0:0:0,6:0,212:-19.4248,-19.4248,-19.4248,-1.80618,-1.80618,0	1/2:69:0,27,41:0:0:27,41:968,1410:-193.447,-114.49,-106.362,-78.9498,0,-66.6075	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/2:13:0,7,6:0:0:7,6:252,216:-38.5463,-17.9843,-15.8771,-20.9217,0,-19.1156	1/2:98:0,38,59:0:0:38,59:1368,2042:-277.556,-165.929,-154.49,-111.622,0,-93.8611	1/2:11:0,4,7:0:0:4,7:144,233:-30.9466,-19.1871,-17.983,-12.1095,0,-10.002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chr08	860763	.	A	G	49476.4	PASS	AB=0.442831;ABP=34.2937;AC=149;AF=0.809783;AN=184;AO=2289;CIGAR=1X;DP=2907;DPB=2907;DPRA=0;EPP=4947.49;EPPR=1342.81;GTI=0;LEN=1;MEANALT=1.01087;MQM=59.9987;MQMR=60;NS=92;NUMALT=1;ODDS=2.8954;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81858;QR=22120;RO=617;RPL=2286;RPP=4947.49;RPPR=1342.81;RPR=3;RUN=1;SAF=0;SAP=4973.51;SAR=2289;SRF=0;SRP=1342.81;SRR=617;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:62:34,28:34:1224:28:1000:-71.6515,0,-91.8032	0/1:70:31,39:31:1089:39:1396:-104.867,0,-77.2452	0/1:11:7,4:7:252:4:134:-9.07872,0,-19.7176	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:38:0,38:0:0:38:1357:-122.43,-11.4391,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:39:0,39:0:0:39:1383:-124.768,-11.7402,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	0/1:27:22,5:22:783:5:180:-8.42425,0,-62.6651	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:12:6,6:6:216:6:192:-13.9811,0,-16.1782	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:125:71,53:71:2543:53:1908:-134.456,0,-191.58	0/1:80:37,43:37:1328:43:1540:-114.811,0,-95.7398	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:67:0,67:0:0:67:2395:-215.806,-20.169,0	1/1:41:2,39:2:72:39:1387:-118.291,-5.50551,0	0/1:45:19,26:19:684:26:936:-71.0131,0,-48.344	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:16:0,16:0:0:16:563:-50.9983,-4.81648,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:72:0,72:0:0:72:2592:-233.528,-21.6742,0	0/1:49:25,24:25:900:24:860:-62.9714,0,-66.5705	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	.:.:.:.:.:.:.:.	0/1:41:20,21:20:720:21:740:-54.58,0,-52.7865	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	1/1:50:0,50:0:0:50:1785:-160.931,-15.0515,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:23:0,23:0:0:23:805:-72.7684,-6.92369,0	0/1:42:23,19:23:828:19:676:-48.5242,0,-62.2009	0/1:33:12,21:12:424:21:754:-58.2529,0,-28.5624	0/1:42:24,18:24:849:18:648:-46.0086,0,-64.0846	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:60:0,60:0:0:60:2143:-193.137,-18.0618,0	1/1:39:0,39:0:0:39:1362:-122.874,-11.7402,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	1/1:25:0,25:0:0:25:883:-79.7866,-7.52575,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:40:27,13:27:964:13:468:-30.4184,0,-75.0356	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:49:36,13:36:1296:13:464:-27.347,0,-102.193	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:28:0,28:0:0:28:995:-89.8637,-8.42884,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:54:0,54:0:0:54:1925:-173.526,-16.2556,0	0/1:55:32,23:32:1152:23:828:-58.2875,0,-87.4335	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:76:0,76:0:0:76:2713:-244.413,-22.8783,0	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	1/1:37:0,37:0:0:37:1313:-118.471,-11.1381,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:22:1,21:1:36:21:730:-62.4203,-3.02439,0	0/1:33:15,18:15:540:18:640:-47.9953,0,-39.0025	1/1:56:0,56:0:0:56:1991:-179.464,-16.8577,0	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:29:20,9:20:720:9:324:-20.776,0,-56.3989	0/1:21:16,5:16:572:5:180:-10.2304,0,-45.4918	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0
chr08	917274	.	A	G	173999	PASS	AB=0.757353;ABP=941.853;AC=159;AF=0.854839;AN=186;AO=6606;CIGAR=1X;DP=7030;DPB=7030;DPRA=10.9053;EPP=3569.68;EPPR=908.514;GTI=9;LEN=1;MEANALT=1.07609;MQM=58.1797;MQMR=60;NS=93;NUMALT=1;ODDS=1.99924;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229692;QR=14733;RO=417;RPL=36;RPP=14036.8;RPPR=908.514;RPR=6570;RUN=1;SAF=1692;SAP=3415.46;SAR=4914;SRF=0;SRP=908.514;SRR=417;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1521:-136.911,-12.9443,0	1/1:98:0,98:0:0:98:3403:-306.365,-29.5009,0	0/1:96:17,78:17:584:78:2755:-218.928,0,-24.0278	0/1:103:25,78:25:865:78:2738:-215.015,0,-47.1569	1/1:47:4,43:4:144:43:1520:-123.357,-0.834793,0	1/1:35:2,33:2:72:33:1154:-97.2419,-3.69933,0	1/1:106:0,106:0:0:106:3667:-329.775,-31.9092,0	1/1:214:0,214:0:0:214:7444:-669.023,-64.4204,0	1/1:96:0,96:0:0:96:3367:-301.406,-28.8989,0	1/1:109:0,109:0:0:109:3805:-341.418,-32.8123,0	1/1:48:0,48:0:0:48:1650:-148.773,-14.4494,0	1/1:74:0,74:0:0:74:2487:-223.624,-22.2762,0	1/1:50:0,50:0:0:50:1712:-154.344,-15.0515,0	1/1:84:0,84:0:0:84:2926:-262.978,-25.2865,0	1/1:54:0,54:0:0:54:1877:-169.18,-16.2556,0	1/1:74:0,74:0:0:74:2554:-229.651,-22.2762,0	1/1:92:0,92:0:0:92:3150:-283.643,-27.6948,0	1/1:69:1,68:1:36:68:2343:-207.419,-17.1728,0	1/1:37:0,37:0:0:37:1284:-115.525,-11.1381,0	1/1:115:0,115:0:0:115:3960:-355.99,-34.6185,0	1/1:112:0,112:0:0:112:3891:-348.903,-33.7154,0	0/1:20:8,12:8:288:12:432:-33.1845,0,-20.2468	1/1:99:0,99:0:0:99:3497:-314.205,-29.802,0	1/1:50:1,49:1:36:49:1710:-150.511,-11.4532,0	1/1:78:0,78:0:0:78:2716:-244.074,-23.4803,0	0/1:133:23,110:23:816:110:3839:-305.615,0,-33.7247	0/1:78:14,64:14:495:64:2256:-179.719,0,-21.4027	1/1:27:0,27:0:0:27:923:-83.3601,-8.12781,0	1/1:170:0,170:0:0:170:5978:-538.028,-51.1751,0	1/1:124:0,124:0:0:124:4256:-383.102,-37.3277,0	0/1:99:20,79:20:680:79:2757:-218.322,0,-31.7132	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:11:0,11:0:0:11:377:-34.2176,-3.31133,0	1/1:6:0,6:0:0:6:198:-18.1433,-1.80618,0	1/1:10:0,10:0:0:10:345:-31.362,-3.0103,0	1/1:6:0,6:0:0:6:203:-18.533,-1.80618,0	1/1:150:0,150:0:0:150:5247:-471.791,-45.1545,0	0/1:90:19,71:19:668:71:2446:-193.196,0,-33.353	1/1:26:1,25:1:36:25:857:-73.4377,-4.22851,0	.:.:.:.:.:.:.:.	0/1:80:23,57:23:809:57:2003:-156.006,0,-49.0459	1/1:16:1,15:1:36:15:479:-39.8164,-1.21821,0	1/1:126:0,125:0:0:125:4286:-383.224,-37.6288,0	1/1:75:0,75:0:0:75:2602:-234.265,-22.5773,0	1/1:46:0,46:0:0:46:1606:-144.623,-13.8474,0	0/1:49:6,43:6:212:43:1536:-123.752,0,-4.67433	0/1:60:8,52:8:284:52:1811:-145.198,0,-7.84155	0/1:74:14,60:14:504:60:2064:-163.682,0,-23.4219	1/1:55:0,55:0:0:55:1941:-174.949,-16.5567,0	1/1:139:0,139:0:0:139:4903:-441.051,-41.8432,0	1/1:77:0,77:0:0:77:2673:-240.43,-23.1793,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:88:15,73:15:540:73:2572:-204.953,0,-22.4459	1/1:52:0,52:0:0:52:1805:-162.6,-15.6536,0	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/1:76:13,63:13:468:63:2221:-177.174,0,-19.5814	1/1:57:2,55:2:68:55:1928:-167.219,-10.701,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/1:9:6,2:6:216:2:72:-4.06865,0,-17.0224	1/1:73:0,73:0:0:73:2511:-226.198,-21.9752,0	1/1:104:0,103:0:0:103:3530:-317.338,-31.0061,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:173:93,80:93:3284:80:2774:-197.815,0,-243.7	1/1:167:0,167:0:0:167:5764:-517.037,-50.272,0	1/1:84:0,84:0:0:84:2953:-265.579,-25.2865,0	1/1:86:0,85:0:0:85:2945:-264.596,-25.5876,0	1/1:172:2,170:2:72:170:5948:-527.525,-44.9404,0	0/1:63:18,44:18:648:44:1540:-119.32,0,-39.666	1/1:31:0,31:0:0:31:1078:-97.2526,-9.33193,0	1/1:79:0,79:0:0:79:2726:-244.703,-23.7814,0	1/1:80:0,80:0:0:80:2757:-248.37,-24.0824,0	1/1:24:0,24:0:0:24:826:-74.6153,-7.22472,0	1/1:71:0,71:0:0:71:2460:-220.923,-21.3731,0	0/1:40:13,27:13:468:27:909:-70.0358,0,-30.4184	1/1:154:0,154:0:0:154:5378:-483.993,-46.3586,0	1/1:160:0,160:0:0:160:5604:-502.635,-48.1648,0	1/1:202:2,200:2:72:200:6954:-617.639,-53.9713,0	1/1:142:0,142:0:0:142:4957:-445.798,-42.7463,0	0/1:7:1,6:1:36:6:216:-17.6263,0,-1.49106	1/1:104:0,104:0:0:104:3690:-332.018,-31.3071,0	0/1:108:21,87:21:741:87:3026:-239.58,0,-34.5004	1/1:189:0,189:0:0:189:6620:-595.213,-56.8947,0	0/1:49:9,40:9:312:40:1368:-108.576,0,-13.6649	1/1:79:0,79:0:0:79:2744:-247.067,-23.7814,0	1/1:45:1,44:1:32:44:1498:-131.756,-10.347,0	1/1:104:0,104:0:0:104:3634:-327.113,-31.3071,0	1/1:29:0,29:0:0:29:977:-88.1196,-8.72987,0	0/1:49:9,40:9:324:40:1405:-111.011,0,-14.7554	1/1:54:0,54:0:0:54:1872:-168.378,-16.2556,0	0/1:28:4,24:4:140:24:841:-67.5775,0,-4.51574	0/1:36:5,31:5:180:31:1065:-85.0637,0,-5.71498	0/1:17:6,11:6:216:11:388:-30.1399,0,-14.673	1/1:106:0,105:0:0:105:3595:-323.034,-31.6082,0	1/1:85:0,85:0:0:85:2911:-261.634,-25.5876,0
chr08	922942	.	A	C	14241.2	PASS	AB=0.570213;ABP=63.3865;AC=34;AF=0.180851;AN=188;AO=808;CIGAR=1X;DP=4055;DPB=4055;DPRA=0.967406;EPP=1680.26;EPPR=6485.66;GTI=0;LEN=1;MEANALT=1.02632;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=1.91009;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28760;QR=114995;RO=3244;RPL=1;RPP=1748.88;RPPR=7029.91;RPR=807;RUN=1;SAF=10;SAP=1671.78;SAR=798;SRF=68;SRP=6469.01;SRR=3176;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:3,10:3:104:10:352:-28.1048,0,-5.78942	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:46:15,31:15:540:31:1112:-86.544,0,-35.0892	0/1:66:34,32:34:1208:32:1140:-83.0412,0,-89.1581	0/1:28:12,16:12:417:16:572:-43.3846,0,-29.4314	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5438	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.692	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:65:65,0:65:2300:0:0:0,-19.5669,-207.262	0/0:137:137,0:137:4920:0:0:0,-41.2411,-442.949	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:40:39,0:39:1391:0:0:0,-11.7402,-125.128	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/0:65:65,0:65:2310:0:0:0,-19.5669,-208.16	0/0:66:66,0:66:2336:0:0:0,-19.868,-210.498	0/1:19:5,14:5:180:14:495:-39.1635,0,-10.8325	0/0:40:39,1:39:1368:1:36:0,-8.44292,-119.82	0/1:17:10,7:10:352:7:252:-17.9114,0,-26.9007	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:58:20,38:20:692:38:1351:-104.43,0,-45.1389	0/1:58:27,31:27:945:31:1086:-80.5878,0,-67.9025	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/0:78:78,0:78:2731:0:0:0,-23.4803,-246.033	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.573	0/1:39:11,28:11:388:28:992:-77.8542,0,-23.5172	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:129:129,0:129:4547:0:0:0,-38.8329,-409.401	0/1:43:17,26:17:596:26:936:-71.6152,0,-41.0235	0/1:44:20,24:20:720:24:852:-63.7551,0,-51.8835	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:38:24,14:24:856:14:500:-33.897,0,-65.922	0/1:33:18,15:18:644:15:536:-38.6408,0,-48.3566	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/1:23:14,9:14:500:9:311:-21.4,0,-38.4125	0/1:42:8,34:8:288:34:1212:-96.7431,0,-13.6241	0/1:60:18,42:18:635:42:1504:-117.593,0,-39.4152	0/0:44:44,0:44:1542:0:0:0,-13.2453,-139.07	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:36:36,0:36:1259:0:0:0,-10.8371,-113.612	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:31:12,19:12:432:19:676:-51.8361,0,-29.8893	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:55:29,26:29:1024:26:928:-67.2816,0,-75.9159	0/1:25:12,13:12:432:13:460:-34.2096,0,-31.6954	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:51:51,0:51:1804:0:0:0,-15.3525,-162.642	0/0:97:97,0:97:3459:0:0:0,-29.1999,-311.523	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:52:26,26:26:911:26:919:-67.3726,0,-66.6514	0/0:76:76,0:76:2665:0:0:0,-22.8783,-240.097	0/0:38:38,0:38:1329:0:0:0,-11.4391,-119.908	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/0:43:42,1:42:1478:1:36:0,-9.34601,-129.715	0/1:103:25,78:25:887:78:2770:-218.535,0,-49.142	0/0:46:45,1:45:1575:1:36:0,-10.2491,-138.439	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2702	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:27:10,17:10:340:17:600:-46.2014,0,-22.8012	0/0:105:105,0:105:3711:0:0:0,-31.6081,-334.193	0/0:53:53,0:53:1869:0:0:0,-15.9546,-168.487	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:39:39,0:39:1375:0:0:0,-11.7402,-124.048	0/1:42:26,16:26:920:16:572:-39.1702,0,-70.4738	0/0:68:67,1:67:2343:1:36:0,-16.8718,-207.53	0/1:45:26,19:26:936:19:680:-47.9828,0,-71.0131	0/0:61:61,0:61:2117:0:0:0,-18.3628,-190.798	0/1:29:14,15:14:496:15:531:-39.392,0,-36.2444	0/0:123:122,0:122:4318:0:0:0,-36.7257,-388.438	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:46:14,32:14:500:32:1148:-89.7825,0,-31.4888	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:78:37,41:37:1296:41:1447:-107.045,0,-93.458	0/1:148:73,75:73:2593:75:2670:-195.992,0,-189.065	0/1:53:19,33:19:675:33:1188:-91.2152,0,-45.0638	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346
chr08	922988	.	A	G	14688.3	PASS	AB=0.570934;ABP=66.1633;AC=35;AF=0.18617;AN=188;AO=836;CIGAR=1X;DP=4104;DPB=4104;DPRA=1.10694;EPP=1741.03;EPPR=6579.43;GTI=1;LEN=1;MEANALT=1;MQM=59.9952;MQMR=60;NS=94;NUMALT=1;ODDS=1.31276;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29779;QR=116747;RO=3268;RPL=836;RPP=1818.36;RPPR=7082.02;RPR=0;RUN=1;SAF=9;SAP=1741.03;SAR=827;SRF=59;SRP=6596.17;SRR=3209;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:3,10:3:108:10:352:-28.1048,0,-6.16178	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:52:19,33:19:676:33:1188:-91.575,0,-45.5144	0/1:65:34,31:34:1205:31:1104:-80.1037,0,-89.1869	0/1:28:12,16:12:420:16:576:-43.7461,0,-29.7052	0/1:23:13,10:13:464:10:360:-25.8206,0,-35.1738	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7228	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:62:61,1:61:2184:1:36:0,-15.0656,-193.228	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:137:137,0:137:4899:0:0:0,-41.2411,-441.062	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.338	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/1:22:5,17:5:180:17:591:-46.8926,0,-9.9294	0/0:43:42,1:42:1508:1:36:0,-9.34601,-132.416	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:58:20,38:20:712:38:1360:-105.241,0,-46.9469	0/1:58:26,32:26:936:32:1132:-84.7288,0,-67.0997	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/0:68:67,1:67:2400:1:36:0,-16.8718,-212.659	0/1:39:11,28:11:381:28:1004:-78.9357,0,-22.8805	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:10:10,0:10:339:0:0:0,-3.0103,-30.8375	0/0:13:13,0:13:445:0:0:0,-3.91339,-40.3754	0/0:136:135,1:135:4827:1:32:0,-37.7408,-431.385	0/1:47:19,28:19:676:28:996:-75.8065,0,-47.0196	0/1:46:21,25:21:756:25:891:-66.6614,0,-54.5198	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:38:22,16:22:792:16:568:-40.0127,0,-60.1665	0/1:34:17,17:17:612:17:612:-45.1784,0,-45.1784	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:23:14,9:14:504:9:315:-21.7635,0,-38.7744	0/1:44:9,35:9:324:35:1248:-99.3795,0,-16.2605	0/1:60:18,42:18:644:42:1492:-116.513,0,-40.2288	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:32:12,20:12:432:20:720:-55.4958,0,-29.5882	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:56:30,26:30:1064:26:928:-66.9806,0,-79.214	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:54:54,0:54:1901:0:0:0,-16.2556,-171.366	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.571	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:52:26,26:26:932:26:936:-68.9059,0,-68.5453	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:44:43,1:43:1540:1:36:0,-9.64704,-135.295	0/1:107:25,82:25:896:82:2880:-227.228,0,-48.7501	0/0:46:45,1:45:1611:1:36:0,-10.2491,-141.681	0/0:20:20,0:20:682:0:0:0,-6.0206,-61.6947	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:32:13,19:13:468:19:664:-50.4506,0,-32.8267	0/0:106:106,0:106:3761:0:0:0,-31.9092,-338.691	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:7:3,4:3:93:4:144:-11.2064,0,-6.56952	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/1:44:27,17:27:972:17:610:-41.9875,0,-74.5526	0/0:72:72,0:72:2555:0:0:0,-21.6742,-230.201	0/1:45:26,19:26:936:19:676:-47.6216,0,-71.0131	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:32:16,16:16:576:16:568:-41.8189,0,-42.542	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:48:15,33:15:540:33:1172:-91.3381,0,-34.4871	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:79:38,41:38:1364:41:1472:-108.995,0,-99.2793	0/1:149:75,74:75:2676:74:2652:-194.073,0,-196.232	0/1:54:19,35:19:680:35:1240:-95.6488,0,-45.2735	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232
chr08	928692	.	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chr08	1113514	.	T	C	10786.7	PASS	AB=0.386823;ABP=212.399;AC=34;AF=0.182796;AN=186;AO=731;CIGAR=1X;DP=5131;DPB=5131;DPRA=1.10302;EPP=1590.36;EPPR=9537.95;GTI=2;LEN=1;MEANALT=1.02941;MQM=60;MQMR=59.9893;NS=93;NUMALT=1;ODDS=2.44096;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26201;QR=157163;RO=4395;RPL=0;RPP=1590.36;RPPR=9546.63;RPR=731;RUN=1;SAF=731;SAP=1590.36;SAR=0;SRF=4394;SRP=9537.95;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:57:57,0:57:2037:0:0:0,-17.1587,-183.6	0/1:71:46,25:46:1648:25:885:-58.5934,0,-127.235	0/1:106:82,24:82:2906:24:860:-45.8127,0,-229.864	0/1:16:11,5:11:396:5:172:-11.0015,0,-31.1663	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:86:85,0:85:3037:0:0:0,-25.5875,-273.199	0/0:88:88,0:88:3153:0:0:0,-26.4906,-283.993	0/0:51:51,0:51:1812:0:0:0,-15.3525,-163.362	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:134:134,0:134:4790:0:0:0,-40.338,-431.253	0/0:92:92,0:92:3278:0:0:0,-27.6948,-295.237	0/1:57:24,33:24:860:33:1171:-88.538,0,-60.5631	0/0:69:69,0:69:2435:0:0:0,-20.7711,-219.401	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:169:107,61:107:3848:61:2185:-145.982,0,-295.581	0/1:113:65,48:65:2321:48:1728:-121.789,0,-175.132	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:186:186,0:186:6684:0:0:0,-55.9916,-601.633	0/0:110:109,1:109:3871:1:36:0,-29.515,-344.984	0/1:61:41,20:41:1476:20:716:-46.4049,0,-114.773	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/1:83:51,32:51:1832:32:1152:-79.0047,0,-140.175	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:60:41,19:41:1446:19:669:-42.4721,0,-112.37	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/1:90:59,31:59:2093:31:1116:-73.659,0,-161.546	0/1:57:38,19:38:1336:19:679:-44.2802,0,-103.378	0/1:105:59,46:59:2101:46:1648:-117,0,-157.75	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:84:84,0:84:3009:0:0:0,-25.2865,-271.039	0/0:105:105,0:105:3742:0:0:0,-31.6081,-336.978	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:74:49,25:49:1760:25:900:-59.0448,0,-136.408	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:60:35,25:35:1256:25:896:-62.8986,0,-95.2835	0/1:32:23,9:23:828:9:324:-19.8729,0,-65.2112	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:214:123,91:123:4383:91:3272:-230.279,0,-329.2	0/0:130:130,0:130:4657:0:0:0,-39.1339,-419.288	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:125:124,0:124:4441:0:0:0,-37.3277,-399.637	0/1:69:37,32:37:1313:32:1148:-82.8588,0,-97.6986	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:47:30,17:30:1046:17:608:-40.9036,0,-80.2975	0/0:85:85,0:85:3029:0:0:0,-25.5875,-272.839	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.062	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.977	0/1:73:47,26:47:1692:26:936:-62.5843,0,-130.592	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/1:82:64,18:64:2304:18:648:-33.9674,0,-182.936	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:24:10,14:10:360:14:496:-37.7495,0,-25.5196	0/0:40:39,0:39:1385:0:0:0,-11.7402,-124.587	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/1:35:19,16:19:680:16:576:-41.6389,0,-50.9931	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:54:21,33:21:756:33:1184:-90.6127,0,-52.1116	0/1:40:19,21:19:669:21:756:-56.326,0,-48.4927	0/0:151:150,0:150:5357:0:0:0,-45.1545,-482.051	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161
chr08	1115519	.	T	G	123525	PASS	AB=0.513129;ABP=7.11567;AC=152;AF=0.808511;AN=188;AO=5768;CIGAR=1X;DP=7117;DPB=7117;DPRA=76.5161;EPP=12519.4;EPPR=2914.96;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.973;MQMR=59.9874;NS=94;NUMALT=1;ODDS=2.32559;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204828;QR=47967;RO=1345;RPL=5766;RPP=12510.7;RPPR=2914.96;RPR=2;RUN=1;SAF=5767;SAP=12519.4;SAR=1;SRF=1345;SRP=2923.64;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	0/1:139:59,80:59:2107:80:2868:-216.514,0,-148.055	0/1:178:77,101:77:2768:101:3580:-268.824,0,-195.777	0/1:49:26,23:26:910:23:812:-58.6504,0,-67.4636	0/1:20:10,10:10:341:10:352:-25.9976,0,-24.9972	1/1:113:0,113:0:0:113:4043:-364.057,-34.0164,0	1/1:122:0,122:0:0:122:4316:-388.512,-36.7257,0	1/1:116:0,116:0:0:116:4123:-371.254,-34.9195,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:31:0,31:0:0:31:1103:-99.5798,-9.33193,0	1/1:67:0,67:0:0:67:2377:-214.187,-20.169,0	1/1:56:0,56:0:0:56:1982:-178.653,-16.8577,0	1/1:34:0,34:0:0:34:1189:-107.243,-10.235,0	1/1:53:0,53:0:0:53:1894:-170.738,-15.9546,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:58:0,58:0:0:58:2061:-185.76,-17.4597,0	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	1/1:34:0,34:0:0:34:1198:-108.124,-10.235,0	1/1:174:1,173:1:36:173:6158:-550.593,-48.7809,0	1/1:79:0,79:0:0:79:2769:-249.445,-23.7814,0	0/1:154:94,60:94:3360:60:2139:-146.419,0,-256.258	1/1:53:0,53:0:0:53:1882:-169.657,-15.9546,0	0/1:101:45,56:45:1620:56:1997:-149.598,0,-115.686	1/1:64:0,64:0:0:64:2272:-204.74,-19.2659,0	0/1:304:145,159:145:5173:159:5688:-420.523,0,-374.168	0/1:182:105,77:105:3763:77:2684:-187.013,0,-284.081	1/1:29:0,29:0:0:29:1023:-92.3817,-8.72987,0	1/1:227:0,226:0:0:226:7976:-717.435,-68.0328,0	1/1:83:0,83:0:0:83:2928:-263.754,-24.9855,0	0/1:53:24,29:24:852:29:1031:-77.148,0,-61.0458	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:1,4:1:21:4:144:-11.8085,0,-0.594796	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:177:0,177:0:0:177:6282:-565.476,-53.2823,0	0/1:110:50,60:50:1782:60:2138:-159.575,0,-127.548	0/1:51:28,23:28:996:23:824:-59.1308,0,-74.6024	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:85:36,49:36:1280:49:1704:-128.052,0,-89.9157	0/1:38:17,21:17:593:21:719:-53.5856,0,-42.2556	1/1:105:0,105:0:0:105:3737:-336.531,-31.6082,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:60:0,60:0:0:60:2114:-190.527,-18.0618,0	0/1:117:51,65:51:1832:65:2328:-174.501,0,-129.882	0/1:87:40,47:40:1419:47:1675:-124.847,0,-101.817	0/1:116:39,77:39:1387:77:2736:-211.562,0,-90.2087	1/1:113:0,113:0:0:113:4036:-363.429,-34.0164,0	1/1:128:1,127:1:36:127:4529:-404.179,-34.9336,0	1/1:228:1,226:1:36:226:8073:-723.041,-65.0451,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:77:30,47:30:1072:47:1688:-129.028,0,-73.6131	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	0/1:13:5,8:5:176:8:284:-21.99,0,-12.2716	0/1:85:40,45:40:1432:45:1608:-119.422,0,-103.59	0/1:49:22,27:22:784:27:972:-73.0474,0,-56.1334	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:15:12,3:12:410:3:108:-5.55972,0,-32.7111	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:104:0,104:0:0:104:3655:-329.157,-31.3071,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:132:67,65:67:2412:65:2301:-167.615,0,-177.6	1/1:145:0,145:0:0:145:5148:-463.457,-43.6494,0	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	1/1:64:1,63:1:36:63:2234:-197.725,-15.6676,0	1/1:136:1,135:1:36:135:4829:-431.167,-37.3418,0	0/1:98:66,32:66:2346:32:1131:-72.5968,0,-181.897	1/1:9:0,9:0:0:9:308:-28.0504,-2.70927,0	1/1:69:0,69:0:0:69:2418:-217.874,-20.7711,0	1/1:57:0,57:0:0:57:2014:-181.532,-17.1587,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:152:1,151:1:36:151:5370:-479.834,-42.1583,0	0/1:42:19,23:19:684:23:805:-60.1253,0,-49.2471	1/1:102:0,102:0:0:102:3625:-326.456,-30.7051,0	1/1:116:1,115:1:36:115:4116:-367.026,-31.3212,0	1/1:51:0,51:0:0:51:1802:-162.459,-15.3525,0	1/1:66:0,66:0:0:66:2333:-210.227,-19.868,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:93:1,92:1:36:92:3273:-291.192,-24.3975,0	0/1:75:43,32:43:1528:32:1134:-79.7031,0,-115.236	1/1:185:1,184:1:36:184:6552:-586.166,-52.0923,0	0/1:77:34,42:34:1215:42:1496:-111.784,0,-86.505	1/1:53:0,53:0:0:53:1847:-166.507,-15.9546,0	0/1:62:34,28:34:1207:28:947:-66.8664,0,-90.2714	1/1:145:1,144:1:36:144:5096:-455.187,-40.0511,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:73:32,41:32:1144:41:1455:-109.27,0,-81.2943	1/1:60:0,60:0:0:60:2117:-190.798,-18.0618,0	0/1:15:6,9:6:216:9:306:-23.3529,0,-15.2751	0/1:58:26,32:26:917:32:1135:-84.9983,0,-65.3849	0/1:50:34,16:34:1212:16:572:-36.7596,0,-94.3348	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:80:1,79:1:36:79:2808:-249.361,-20.4841,0
chr08	1123044	.	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chr08	1130233	.	T	C	37133.8	PASS	AB=0.5016;ABP=3.1076;AC=35;AF=0.18617;AN=188;AO=2215;CIGAR=1X;DP=11318;DPB=11318;DPRA=1.2262;EPP=4812.82;EPPR=19659.3;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9914;MQMR=59.9835;NS=94;NUMALT=1;ODDS=0.719752;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79198;QR=324080;RO=9100;RPL=2215;RPP=4812.82;RPPR=19659.3;RPR=0;RUN=1;SAF=0;SAP=4812.82;SAR=2215;SRF=0;SRP=19763.4;SRR=9100;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:11,27:11:396:27:964:-75.6377,0,-24.5436	0/0:221:219,2:219:7760:2:72:0,-59.6909,-691.598	0/1:152:84,68:84:3004:68:2430:-173.199,0,-224.835	0/1:217:108,109:108:3837:109:3893:-285.241,0,-280.204	0/1:101:51,50:51:1824:50:1796:-131.518,0,-134.037	0/1:90:53,37:53:1892:37:1320:-92.0087,0,-143.307	0/0:188:187,1:187:6681:1:32:0,-53.3943,-598.167	0/0:242:240,2:240:8543:2:72:0,-66.0125,-762.03	0/0:98:97,1:97:3465:1:36:0,-25.9027,-308.462	0/0:123:123,0:123:4404:0:0:0,-37.0267,-395.258	0/0:78:78,0:78:2780:0:0:0,-23.4803,-250.442	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:63:62,1:62:2212:1:36:0,-15.3666,-195.747	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:78:78,0:78:2774:0:0:0,-23.4803,-249.898	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:299:299,0:299:10568:0:0:0,-90.008,-951.038	0/0:197:197,0:197:7041:0:0:0,-59.3029,-633.324	0/1:149:57,92:57:2014:92:3308:-253.084,0,-136.676	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/1:83:34,49:34:1220:49:1751:-132.888,0,-85.1213	0/0:90:90,0:90:3212:0:0:0,-27.0927,-289.304	0/1:376:203,173:203:7214:173:6168:-442.03,0,-536.131	0/1:277:151,126:151:5405:126:4518:-323.401,0,-403.193	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:315:315,0:315:11230:0:0:0,-94.8244,-1010.59	0/0:181:177,3:177:6333:3:108:0,-44.3537,-560.023	0/1:155:88,67:88:3156:67:2390:-168.697,0,-237.605	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:212:212,0:212:7565:0:0:0,-63.8184,-680.891	0/1:336:144,192:144:5121:192:6888:-518.84,0,-359.886	0/1:78:41,37:41:1464:37:1315:-95.1707,0,-108.575	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:201:116,84:116:4141:84:3016:-211.252,0,-312.456	0/1:34:22,12:22:788:12:428:-28.6238,0,-61.0098	0/0:187:187,0:187:6609:0:0:0,-56.2926,-594.878	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.58	0/1:78:37,41:37:1294:41:1453:-107.584,0,-93.2767	0/1:157:71,86:71:2525:86:3065:-228.813,0,-180.239	0/1:237:126,111:126:4447:111:3937:-283.177,0,-329.058	0/0:142:141,1:141:5018:1:36:0,-39.148,-448.168	0/0:184:183,0:183:6511:0:0:0,-55.0885,-585.853	0/0:235:235,0:235:8378:0:0:0,-70.742,-754.027	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:182:93,89:93:3331:89:3169:-230.646,0,-245.219	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.985	0/1:20:5,15:5:180:15:536:-42.5542,0,-10.5315	0/1:123:68,55:68:2429:55:1960:-139.649,0,-181.837	0/1:29:11,18:11:392:18:648:-49.922,0,-26.8902	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/0:119:119,0:119:4192:0:0:0,-35.8226,-377.461	0/0:123:123,0:123:4385:0:0:0,-37.0267,-394.823	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:272:133,139:133:4726:139:4957:-364.397,0,-343.619	0/0:267:264,3:264:9358:3:108:0,-70.2998,-832.111	0/0:86:86,0:86:3045:0:0:0,-25.8886,-274.28	0/0:99:98,1:98:3452:1:36:0,-26.2037,-307.291	0/0:205:202,3:202:7112:3:108:0,-51.636,-630.072	0/1:194:65,129:65:2249:129:4628:-358.269,0,-144.266	0/0:33:32,1:32:1148:1:36:0,-6.33571,-100.032	0/0:105:105,0:105:3776:0:0:0,-31.6081,-340.037	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:118:118,0:118:4213:0:0:0,-35.5215,-379.35	0/1:95:63,32:63:2252:32:1152:-75.3923,0,-174.345	0/0:206:206,0:206:7350:0:0:0,-62.0122,-661.548	0/0:268:268,0:268:9564:0:0:0,-80.676,-860.712	0/0:121:119,2:119:4256:2:72:0,-29.5879,-376.383	0/0:178:178,0:178:6369:0:0:0,-53.5833,-572.981	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:161:161,0:161:5704:0:0:0,-48.4658,-513.478	0/1:150:63,87:63:2241:87:3105:-234.522,0,-156.798	0/0:326:326,0:326:11649:0:0:0,-98.1358,-1048.28	0/1:120:55,65:55:1956:65:2327:-173.566,0,-140.192	0/0:71:71,0:71:2511:0:0:0,-21.3731,-226.243	0/1:88:52,36:52:1856:36:1292:-90.0931,0,-140.829	0/0:158:158,0:158:5648:0:0:0,-47.5627,-508.441	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/1:78:43,35:43:1532:35:1256:-89.8649,0,-114.693	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:53:26,27:26:936:27:968:-71.4828,0,-68.6049	0/1:108:63,45:63:2252:45:1616:-113.219,0,-170.432	0/1:67:20,47:20:701:47:1688:-132.038,0,-43.2427	0/0:124:124,0:124:4426:0:0:0,-37.3277,-398.509	0/0:114:114,0:114:4057:0:0:0,-34.3174,-365.318
chr08	1160969	.	C	A	21903.1	PASS	AB=0.479114;ABP=13.4417;AC=38;AF=0.202128;AN=188;AO=1327;CIGAR=1X;DP=6759;DPB=6759;DPRA=1.10741;EPP=2849.92;EPPR=11705.2;GTI=1;LEN=1;MEANALT=1.02222;MQM=59.9774;MQMR=59.9948;NS=94;NUMALT=1;ODDS=1.98694;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47356;QR=193464;RO=5425;RPL=1323;RPP=2849.92;RPPR=11705.2;RPR=4;RUN=1;SAF=1327;SAP=2884.55;SAR=0;SRF=5425;SRP=11783.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:29,29:29:1036:29:1034:-75.9137,0,-76.0942	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:88:53,35:53:1895:35:1256:-86.8546,0,-144.337	0/1:117:42,75:42:1508:75:2679:-206.134,0,-100.794	0/1:63:33,30:33:1188:30:1080:-78.5484,0,-88.2637	0/1:42:28,14:28:990:14:504:-33.0548,0,-76.7694	0/0:37:36,1:36:1292:1:36:0,-7.53983,-112.985	0/0:122:122,0:122:4331:0:0:0,-36.7257,-389.966	0/0:112:112,0:112:4011:0:0:0,-33.7154,-361.178	0/0:94:94,0:94:3358:0:0:0,-28.2968,-302.436	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:94:94,0:94:3336:0:0:0,-28.2968,-300.457	0/0:70:70,0:70:2475:0:0:0,-21.0721,-223.001	0/0:37:37,0:37:1310:0:0:0,-11.1381,-118.181	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:141:141,0:141:5042:0:0:0,-42.4452,-453.925	0/1:76:25,51:25:892:51:1824:-141.562,0,-57.7214	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.497	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:99:99,0:99:3519:0:0:0,-29.802,-316.921	0/1:221:107,114:107:3832:114:4046:-297.801,0,-278.549	0/1:188:123,65:123:4396:65:2332:-153.546,0,-339.217	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:157:153,0:153:5439:0:0:0,-46.0576,-489.281	0/0:116:115,1:115:4115:1:36:0,-31.3212,-366.936	0/1:69:39,30:39:1383:30:1064:-75.3006,0,-103.997	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:173:173,0:173:6136:0:0:0,-52.0782,-552.339	0/1:105:55,50:55:1949:50:1792:-129.954,0,-144.076	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:110:69,41:69:2480:41:1468:-99.3028,0,-190.34	0/1:22:4,18:4:144:18:644:-51.6679,0,-6.69096	0/1:129:73,56:73:2616:56:2004:-141.8,0,-196.855	0/1:37:19,18:19:684:18:648:-47.5138,0,-50.7522	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/1:120:69,50:69:2436:50:1788:-125.02,0,-183.312	0/1:137:72,65:72:2583:65:2330:-168.718,0,-191.477	0/1:150:88,62:88:3152:62:2224:-155.27,0,-238.751	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.512	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:133:133,0:133:4711:0:0:0,-40.037,-424.149	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:78:50,28:50:1780:28:1003:-67.1053,0,-137.003	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:103:52,51:52:1860:51:1805:-131.724,0,-136.674	0/1:59:22,37:22:784:37:1309:-100.344,0,-53.1231	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:88:88,0:88:3128:0:0:0,-26.4906,-281.745	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:151:91,60:91:3260:60:2128:-146.333,0,-248.165	0/0:156:155,1:155:5497:1:36:0,-43.3624,-491.26	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:59:59,0:59:2084:0:0:0,-17.7608,-187.828	0/0:128:127,1:127:4537:1:36:0,-34.9336,-404.898	0/1:153:63,90:63:2244:90:3191:-241.341,0,-156.166	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:36:35,1:35:1241:1:36:0,-7.2388,-108.394	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:117:116,1:116:4132:1:32:0,-32.0212,-368.864	0/1:72:41,31:41:1455:31:1093:-77.0002,0,-109.571	0/0:80:80,0:80:2830:0:0:0,-24.0824,-254.937	0/0:140:140,0:140:5023:0:0:0,-42.1442,-452.214	0/0:102:102,0:102:3633:0:0:0,-30.7051,-327.175	0/0:65:63,2:63:2243:2:72:0,-12.7302,-195.296	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/1:56:20,36:20:716:36:1292:-99.7261,0,-47.91	0/0:215:214,0:214:7624:0:0:0,-64.4204,-685.84	0/1:57:19,38:19:684:38:1352:-104.822,0,-44.7316	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:35:17,18:17:597:18:644:-47.7545,0,-43.5201	0/0:124:124,0:124:4416:0:0:0,-37.3277,-397.612	0/0:28:27,0:27:972:0:0:0,-8.12781,-87.4381	0/1:48:30,18:30:1076:18:648:-44.2024,0,-82.7034	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	0/1:55:31,24:31:1116:24:856:-60.8045,0,-84.195	0/1:52:13,39:13:464:39:1382:-109.023,0,-26.4439	0/0:166:166,0:166:5918:0:0:0,-49.971,-532.731	0/0:102:102,0:102:3618:0:0:0,-30.7051,-325.825
chr08	1182232	.	CAAT	GAAC,CAAC	75368.5	PASS	AB=0.553531,0.444191;ABP=35.7901,38.6393;AC=151,35;AF=0.811828,0.188172;AN=186;AO=2940,586;CIGAR=1X2M1X,3M1X;DP=3539;DPB=3539;DPRA=0,1.00246;EPP=6387.14,1275.49;EPPR=0;GTI=0;LEN=4,1;MEANALT=1.51613,2.08333;MQM=59.435,59.5324;MQMR=0;NS=93;NUMALT=2;ODDS=1.78716;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=103011,20966;QR=0;RO=0;RPL=0,0;RPP=6387.14,1275.49;RPPR=0;RPR=2940,586;RUN=1,1;SAF=2940,586;SAP=6387.14,1275.49;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:20:0,11,8:0:0:11,8:388,284:-54.712,-23.1279,-19.8166,-31.5792,0,-29.171	1/1:34:0,34,0:0:0:34,0:1170,0:-105.506,-10.235,0,-105.506,-10.235,-105.506	1/2:89:0,42,46:0:0:42,46:1456,1641:-252.115,-133.801,-121.157,-118.345,0,-104.497	1/2:84:0,42,42:0:0:42,42:1471,1504:-242.686,-123.007,-110.363,-120.033,0,-107.39	1/2:32:0,17,15:0:0:17,15:600,540:-93.231,-44.4211,-39.3036,-49.1663,0,-44.6509	1/2:15:0,10,5:0:0:10,5:359,180:-44.3304,-15.0469,-12.0366,-29.643,0,-28.1379	1/1:58:0,58,0:0:0:58,0:2024,0:-182.319,-17.4597,0,-182.319,-17.4597,-182.319	1/1:17:0,17,0:0:0:17,0:590,0:-53.3138,-5.11751,0,-53.3138,-5.11751,-53.3138	1/1:30:0,30,0:0:0:30,0:1042,0:-94.0466,-9.0309,0,-94.0466,-9.0309,-94.0466	1/1:27:0,27,0:0:0:27,0:968,0:-87.4354,-8.12781,0,-87.4354,-8.12781,-87.4354	1/1:12:0,12,0:0:0:12,0:423,0:-38.4054,-3.61236,0,-38.4054,-3.61236,-38.4054	1/1:37:0,37,0:0:0:37,0:1312,0:-118.365,-11.1381,0,-118.365,-11.1381,-118.365	1/1:34:0,34,0:0:0:34,0:1193,0:-107.459,-10.235,0,-107.459,-10.235,-107.459	1/1:17:0,17,0:0:0:17,0:586,0:-53.0592,-5.11751,0,-53.0592,-5.11751,-53.0592	1/1:32:0,32,0:0:0:32,0:1132,0:-101.993,-9.63296,0,-101.993,-9.63296,-101.993	1/1:28:0,28,0:0:0:28,0:989,0:-89.3227,-8.42884,0,-89.3227,-8.42884,-89.3227	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:10:0,10,0:0:0:10,0:358,0:-32.5629,-3.0103,0,-32.5629,-3.0103,-32.5629	1/1:6:0,6,0:0:0:6,0:210,0:-19.2334,-1.80618,0,-19.2334,-1.80618,-19.2334	1/1:68:0,67,0:0:0:67,0:2335,0:-209.853,-20.169,0,-209.853,-20.169,-209.853	1/1:52:0,52,0:0:0:52,0:1779,0:-160.387,-15.6536,0,-160.387,-15.6536,-160.387	1/2:41:0,24,17:0:0:24,17:817,612:-116.524,-50.2959,-43.0712,-66.5794,0,-61.4618	1/1:39:0,39,0:0:0:39,0:1342,0:-121.068,-11.7402,0,-121.068,-11.7402,-121.068	1/2:23:0,9,14:0:0:9,14:315,504:-67.1069,-41.4837,-38.7744,-25.9769,0,-21.7625	1/1:47:0,47,0:0:0:47,0:1660,0:-149.623,-14.1484,0,-149.623,-14.1484,-149.623	1/2:85:0,64,21:0:0:64,21:2270,756:-246.981,-62.0447,-42.7788,-185.295,0,-178.974	1/2:58:0,37,20:0:0:37,20:1314,716:-165.504,-58.4645,-47.3264,-107.141,0,-101.121	1/1:6:0,6,0:0:0:6,0:202,0:-18.5097,-1.80618,0,-18.5097,-1.80618,-18.5097	1/1:125:0,123,0:0:0:123,0:4292,0:-385.99,-37.0267,0,-385.99,-37.0267,-385.99	1/1:55:0,54,1:0:0:54,1:1899,36:-170.558,-16.2556,0,-167.62,-12.9584,-167.319	1/2:22:0,15,7:0:0:15,7:519,248:-62.7271,-20.557,-16.0415,-42.5216,0,-40.4144	1/2:9:0,4,5:0:0:4,5:130,180:-25.5151,-15.0386,-13.8345,-10.8169,0,-9.31174	1/1:16:0,16,0:0:0:16,0:553,0:-50.0878,-4.81648,0,-50.0878,-4.81648,-50.0878	.:.:.:.:.:.:.:.	1/1:7:0,7,0:0:0:7,0:243,0:-22.2075,-2.10721,0,-22.2075,-2.10721,-22.2075	1/1:13:0,13,0:0:0:13,0:459,0:-41.6449,-3.91339,0,-41.6449,-3.91339,-41.6449	1/1:96:0,95,0:0:0:95,0:3343,0:-300.731,-28.5979,0,-300.731,-28.5979,-300.731	1/2:35:0,23,12:0:0:23,12:807,432:-101.239,-35.6042,-28.6805,-65.9919,0,-62.3795	1/2:14:0,7,7:0:0:7,7:251,252:-41.3933,-20.9217,-18.8145,-20.8306,0,-18.7234	1/1:6:0,6,0:0:0:6,0:211,0:-19.3335,-1.80618,0,-19.3335,-1.80618,-19.3335	1/2:26:0,17,9:0:0:17,9:608,324:-76.3619,-26.7919,-21.6744,-49.929,0,-47.2197	1/2:15:0,10,5:0:0:10,5:348,180:-43.3333,-15.0469,-12.0366,-28.6422,0,-27.137	1/2:57:0,38,19:0:0:38,19:1336,680:-164.549,-55.8077,-44.3686,-109.097,0,-103.378	1/2:10:0,4,6:0:0:4,6:144,208:-29.0069,-17.252,-16.0478,-12.1095,0,-10.3033	1/1:21:0,21,0:0:0:21,0:740,0:-66.9082,-6.32163,0,-66.9082,-6.32163,-66.9082	1/2:40:0,25,15:0:0:25,15:846,536:-112.63,-44.059,-36.5332,-68.9207,0,-64.4053	1/2:29:0,19,10:0:0:19,10:673,356:-84.1531,-29.3515,-23.6319,-55.1567,0,-52.1464	1/2:71:0,50,21:0:0:50,21:1762,756:-205.455,-62.0456,-46.9941,-143.766,0,-137.445	1/1:52:0,52,0:0:0:52,0:1824,0:-164.438,-15.6536,0,-164.438,-15.6536,-164.438	1/1:38:0,38,0:0:0:38,0:1349,0:-121.703,-11.4391,0,-121.703,-11.4391,-121.703	1/1:67:0,67,0:0:0:67,0:2358,0:-212.478,-20.169,0,-212.478,-20.169,-212.478	1/1:1:0,1,0:0:0:1,0:34,0:-3.39891,-0.30103,0,-3.39891,-0.30103,-3.39891	1/2:36:0,15,21:0:0:15,21:530,756:-105.088,-62.0328,-57.5173,-43.4103,0,-37.0887	1/1:19:0,19,0:0:0:19,0:663,0:-59.9914,-5.71957,0,-59.9914,-5.71957,-59.9914	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/2:62:0,25,37:0:0:25,37:890,1305:-179.148,-106.609,-99.0837,-72.8934,0,-61.7553	1/2:28:0,18,10:0:0:18,10:637,360:-81.616,-29.734,-24.3155,-52.2397,0,-49.2294	1/1:9:0,9,0:0:0:9,0:314,0:-28.5976,-2.70927,0,-28.5976,-2.70927,-28.5976	1/2:9:0,4,5:0:0:4,5:142,180:-26.6149,-15.0469,-13.8428,-11.9251,0,-10.4199	1/1:33:0,33,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chr08	1182277	.	C	A	8817.07	PASS	AB=0.445051;ABP=36.6588;AC=35;AF=0.188172;AN=186;AO=575;CIGAR=1X;DP=3438;DPB=3438;DPRA=1.00752;EPP=1251.61;EPPR=6217.76;GTI=1;LEN=1;MEANALT=1.02632;MQM=59.5409;MQMR=59.499;NS=93;NUMALT=1;ODDS=0.0736321;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20486;QR=100947;RO=2862;RPL=575;RPP=1251.61;RPPR=6217.76;RPR=0;RUN=1;SAF=575;SAP=1251.61;SAR=0;SRF=2862;SRP=6217.76;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:11,6:11:392:6:216:-14.673,0,-30.4912	0/0:32:32,0:32:1108:0:0:0,-9.63296,-99.9272	0/1:87:42,45:42:1492:45:1616:-119.532,0,-108.185	0/1:88:42,45:42:1473:45:1593:-117.102,0,-106.308	0/1:32:18,14:18:627:14:496:-35.3413,0,-47.0764	0/1:15:10,5:10:351:5:180:-12.0366,0,-27.4108	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.782	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.5498	0/0:29:29,0:29:1008:0:0:0,-8.72987,-90.9778	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3107	0/0:13:13,0:13:448:0:0:0,-3.91339,-40.6486	0/0:37:37,0:37:1299:0:0:0,-11.1381,-117.204	0/0:33:33,0:33:1175:0:0:0,-9.93399,-105.922	0/0:17:17,0:17:568:0:0:0,-5.11751,-51.4282	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5086	0/0:28:28,0:28:983:0:0:0,-8.42884,-88.782	0/0:12:12,0:12:404:0:0:0,-3.61236,-36.6679	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1817	0/0:66:66,0:66:2350:0:0:0,-19.868,-211.748	0/0:46:46,0:46:1611:0:0:0,-13.8474,-145.278	0/1:40:23,17:23:824:17:608:-43.0108,0,-62.3263	0/0:35:35,0:35:1220:0:0:0,-10.536,-110.094	0/1:22:8,14:8:284:14:500:-38.7135,0,-19.2807	0/0:46:44,2:44:1547:2:72:0,-7.0241,-132.665	0/1:82:63,19:63:2212:19:675:-36.3916,0,-174.658	0/1:57:37,20:37:1305:20:716:-47.5805,0,-100.511	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:120:120,0:120:4277:0:0:0,-36.1236,-385.099	0/0:51:50,1:50:1767:1:36:0,-11.7543,-155.714	0/1:22:15,7:15:522:7:252:-16.4063,0,-40.6846	0/1:9:4,5:4:144:5:180:-13.8345,0,-10.6043	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1643	.:.:.:.:.:.:.:.	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:94:94,0:94:3295:0:0:0,-28.2968,-296.769	0/1:34:22,12:22:788:12:432:-28.9815,0,-60.8077	0/1:14:7,7:7:248:7:248:-18.4498,0,-18.4498	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:24:15,9:15:532:9:324:-22.2765,0,-40.9834	0/1:14:9,5:9:291:5:180:-12.3376,0,-22.289	0/1:57:38,19:38:1343:19:669:-43.3751,0,-104.006	0/1:9:4,5:4:144:5:172:-13.1087,0,-10.6043	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5316	0/1:39:23,16:23:819:16:557:-38.7145,0,-62.285	0/1:28:19,9:19:680:9:309:-19.6977,0,-53.0806	0/1:71:50,21:50:1788:21:756:-46.9941,0,-139.736	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/0:38:38,0:38:1342:0:0:0,-11.4391,-121.072	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.915	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:36:15,21:15:527:21:748:-56.7982,0,-36.8165	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1704	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:59:24,35:24:856:35:1244:-94.502,0,-59.6003	0/1:27:18,9:18:633:9:324:-21.378,0,-49.1673	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/1:9:4,5:4:136:5:180:-13.8428,0,-9.86627	0/0:31:30,1:30:1050:1:36:0,-5.73876,-91.1145	0/0:72:72,0:72:2467:0:0:0,-21.6742,-221.134	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:109:61,48:61:2162:48:1707:-121.1,0,-162.033	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.432	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7307	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7644	0/0:97:97,0:97:3419:0:0:0,-29.1999,-307.884	0/1:38:17,21:17:599:21:756:-56.9211,0,-42.7464	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8719	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7227	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.339	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:86:86,0:86:3029:0:0:0,-25.8886,-271.986	0/1:39:21,18:21:744:18:644:-46.5054,0,-55.4982	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.351	0/0:106:106,0:106:3778:0:0:0,-31.9092,-340.208	0/0:87:87,0:87:3047:0:0:0,-26.1896,-273.919	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.2079	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:40:40,0:40:1395:0:0:0,-12.0412,-125.844	0/1:45:12,33:12:424:33:1184:-93.3033,0,-24.9418	0/0:93:93,0:93:3275:0:0:0,-27.9958,-294.907	0/1:37:16,21:16:542:21:752:-56.8141,0,-37.9598	0/0:28:28,0:28:982:0:0:0,-8.42884,-88.6917	0/1:16:8,8:8:273:8:284:-21.0822,0,-20.0837	0/0:50:50,0:50:1760:0:0:0,-15.0515,-158.595	0/0:14:14,0:14:474:0:0:0,-4.21442,-42.974	0/1:28:17,11:17:604:11:396:-27.5539,0,-46.2454	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.7848	0/1:7:5,2:5:176:2:63:-3.87594,0,-14.0778	0/1:37:20,17:20:690:17:593:-42.2368,0,-51.2741	0/1:30:11,19:11:392:19:684:-52.8594,0,-26.5868	0/0:92:92,0:92:3283:0:0:0,-27.6948,-295.609	0/0:31:31,0:31:1088:0:0:0,-9.33193,-98.2288
chr08	1203673	.	A	C	138511	PASS	AB=0.444444;ABP=107.965;AC=149;AF=0.792553;AN=188;AO=6608;CIGAR=1X;DP=8800;DPB=8800;DPRA=94.6129;EPP=14308.7;EPPR=4747.68;GTI=4;LEN=1;MEANALT=1.03226;MQM=59.9687;MQMR=59.989;NS=94;NUMALT=1;ODDS=1.5493;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233921;QR=78453;RO=2189;RPL=6603;RPP=14308.7;RPPR=4730.34;RPR=5;RUN=1;SAF=6608;SAP=14352.1;SAR=0;SRF=2187;SRP=4739.01;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	1/1:202:0,202:0:0:202:7170:-645.359,-60.8081,0	0/1:143:82,61:82:2932:61:2128:-148.735,0,-221.067	0/1:238:131,107:131:4692:107:3781:-268.847,0,-350.795	0/1:75:48,27:48:1724:27:960:-64.139,0,-132.868	0/1:58:19,39:19:684:39:1370:-106.136,0,-44.4306	1/1:103:0,103:0:0:103:3642:-327.987,-31.0061,0	1/1:177:0,177:0:0:177:6297:-566.634,-53.2823,0	1/1:82:0,82:0:0:82:2893:-260.607,-24.6845,0	1/1:93:0,93:0:0:93:3314:-298.477,-27.9958,0	1/1:42:0,42:0:0:42:1487:-134.124,-12.6433,0	1/1:63:0,63:0:0:63:2201:-198.352,-18.9649,0	1/1:54:0,54:0:0:54:1901:-171.364,-16.2556,0	1/1:63:0,63:0:0:63:2197:-197.99,-18.9649,0	1/1:73:0,73:0:0:73:2583:-232.717,-21.9752,0	1/1:42:0,42:0:0:42:1483:-133.763,-12.6433,0	1/1:47:0,47:0:0:47:1628:-146.803,-14.1484,0	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	1/1:37:0,37:0:0:37:1308:-118.019,-11.1381,0	1/1:264:0,264:0:0:264:9396:-845.607,-79.4719,0	1/1:113:0,113:0:0:113:3996:-359.83,-34.0164,0	0/1:107:75,32:75:2676:32:1143:-70.9685,0,-208.876	1/1:100:0,100:0:0:100:3563:-320.879,-30.103,0	0/1:115:54,61:54:1936:61:2131:-157.439,0,-139.898	1/1:51:0,51:0:0:51:1779:-160.389,-15.3525,0	0/1:361:215,145:215:7720:145:5097:-350.236,0,-586.18	0/1:193:113,80:113:4048:80:2823:-196.21,0,-306.409	1/1:28:0,28:0:0:28:995:-89.8632,-8.42884,0	1/1:266:0,266:0:0:266:9501:-854.679,-80.074,0	1/1:175:0,174:0:0:174:6203:-558.01,-52.3792,0	0/1:156:77,79:77:2749:79:2805:-205.73,0,-200.69	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3376	1/1:9:0,9:0:0:9:300:-27.3221,-2.70927,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:163:1,162:1:36:162:5701:-509.61,-45.4696,0	0/1:193:86,107:86:3073:107:3776:-281.941,0,-218.698	0/1:52:20,32:20:708:32:1121:-85.5423,0,-48.392	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:179:101,78:101:3624:78:2796:-197.996,0,-272.48	0/1:32:17,15:17:608:15:528:-38.2177,0,-45.4191	0/1:71:36,35:36:1288:35:1236:-90.1517,0,-94.8505	0/1:79:41,38:41:1467:38:1341:-97.2067,0,-108.544	1/1:50:0,50:0:0:50:1772:-159.76,-15.0515,0	0/1:61:34,27:34:1224:27:949:-67.3605,0,-92.1042	0/1:167:88,79:88:3156:79:2793:-201.019,0,-233.993	0/1:186:118,68:118:4232:68:2423:-162.334,0,-325.067	1/1:82:0,82:0:0:82:2896:-260.878,-24.6845,0	1/1:122:0,122:0:0:122:4316:-388.62,-36.7257,0	1/1:120:0,120:0:0:120:4241:-381.871,-36.1236,0	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:195:120,75:120:4308:75:2671:-181.935,0,-329.194	1/1:48:0,48:0:0:48:1711:-154.275,-14.4494,0	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.6223	0/1:157:87,70:87:3115:70:2469:-175.202,0,-233.314	0/1:67:35,32:35:1260:32:1143:-83.0105,0,-93.5365	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.8878	1/1:58:0,58:0:0:58:2046:-184.411,-17.4597,0	1/1:80:0,80:0:0:80:2800:-252.236,-24.0824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:236:146,90:146:5240:90:3210:-218.079,0,-400.693	1/1:175:0,175:0:0:175:6179:-556.213,-52.6803,0	1/1:59:0,59:0:0:59:2103:-189.539,-17.7608,0	1/1:80:1,79:1:36:79:2796:-248.281,-20.4841,0	1/1:165:8,157:8:288:157:5601:-477.946,-23.4025,0	0/1:145:104,41:104:3740:41:1463:-88.3159,0,-293.15	1/1:21:0,21:0:0:21:733:-66.2897,-6.32163,0	1/1:65:0,65:0:0:65:2296:-206.901,-19.567,0	1/1:54:0,54:0:0:54:1907:-171.906,-16.2556,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:78:1,77:1:36:77:2702:-239.825,-19.8821,0	0/1:53:21,32:21:752:32:1127:-85.7829,0,-52.0517	1/1:123:0,123:0:0:123:4375:-393.923,-37.0267,0	1/1:165:0,165:0:0:165:5869:-528.324,-49.67,0	1/1:124:0,123:0:0:123:4340:-390.456,-37.0267,0	1/1:65:1,64:1:36:64:2300:-203.662,-15.9687,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:103:0,103:0:0:103:3650:-328.704,-31.0061,0	0/1:112:62,50:62:2224:50:1788:-127.487,0,-166.709	1/1:243:0,243:0:0:243:8624:-776.102,-73.1503,0	0/1:96:48,48:48:1728:48:1672:-121.862,0,-126.906	1/1:44:0,44:0:0:44:1554:-140.149,-13.2453,0	0/1:70:31,39:31:1108:39:1387:-104.056,0,-78.9589	1/1:112:1,111:1:36:111:3909:-348.393,-30.1171,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	0/1:77:43,34:43:1522:34:1186:-83.8591,0,-114.092	1/1:67:1,66:1:36:66:2321:-205.549,-16.5707,0	0/1:38:17,21:17:608:21:748:-56.2062,0,-43.6129	0/1:61:27,34:27:972:34:1166:-86.874,0,-69.4351	0/1:68:44,24:44:1571:24:841:-55.5363,0,-121.211	1/1:112:0,112:0:0:112:3980:-358.392,-33.7154,0	1/1:93:0,93:0:0:93:3258:-293.439,-27.9958,0
chr08	1329663	.	GAAAAAAGC	GAAAAAAAAAAC,GAAAAAAAC,GAAAAAAAAAC	80248.3	PASS	AB=0.582495,0.540343,0.099558;ABP=273.145,35.9496,5990.72;AC=109,36,41;AF=0.586022,0.193548,0.22043;AN=186;AO=3421,1267,486;CIGAR=1M3I6M1X1M,7M1X1M,1M2I6M1X1M;DP=5451;DPB=6808.89;DPRA=0,1.2863,19.6329;EPP=7431.62,2754.27,1058.35;EPPR=0;GTI=10;LEN=12,1,11;MEANALT=3.51613,3.97368,3.74684;MQM=33.7068,59.7009,39.0782;MQMR=0;NS=93;NUMALT=3;ODDS=4672.91;PAIRED=0,0,0;PAIREDR=0;PAO=0,0,0;PQA=0,0,0;PQR=0;PRO=0;QA=109220,44890,16477;QR=0;RO=0;RPL=0,0,0;RPP=7431.62,2754.27,1058.35;RPPR=0;RPR=3421,1267,486;RUN=1,1,1;SAF=3421,1267,486;SAP=7431.62,2754.27,1058.35;SAR=0,0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/3:6:0,4,0,2:0:0:4,0,2:126,0,56:-13.3093,-4.14694,-2.94282,-13.3093,-4.14694,-13.3093,-9.4248,0,-9.4248,-8.82274	1/1:100:0,87,0,4:0:0:87,0,4:2780,0,128:-227.988,-26.1896,0,-227.988,-26.1896,-227.988,-218.756,-16.9357,-218.756,-217.551	1/2:63:0,19,40,3:0:0:19,40,3:613,1410,96:-159.327,-114.868,-109.148,-44.49,0,-32.4488,-152.404,-107.947,-37.5656,-151.501	1/1:92:0,82,0,5:0:0:82,0,5:2779,0,176:-233.114,-24.6845,0,-233.114,-24.6845,-233.114,-219.185,-10.6871,-219.185,-217.68	1/2:36:0,15,20,1:0:0:15,20,1:401,705,36:-85.7001,-57.4064,-52.891,-28.2433,0,-22.2227,-82.891,-54.5987,-25.4289,-82.59	1/2:24:0,10,8,4:0:0:10,8,4:317,288,128:-46.6377,-23.5498,-20.5395,-23.1136,0,-20.7053,-37.4088,-14.3297,-13.8784,-36.2046	1/3:72:0,50,0,19:0:0:50,0,19:1632,0,650:-173.736,-51.4894,-36.4379,-173.736,-51.4894,-173.736,-122.339,0,-122.339,-116.619	1/3:75:0,54,0,13:0:0:54,0,13:1723,0,416:-155.544,-30.0433,-13.7877,-155.544,-30.0433,-155.544,-125.536,0,-125.536,-121.623	1/3:26:0,22,0,3:0:0:22,0,3:698,0,96:-57.8243,-6.932,-0.309336,-57.8243,-6.932,-57.8243,-50.8999,0,-50.8999,-49.9968	1/3:73:0,55,0,11:0:0:55,0,11:1852,0,365:-167.034,-29.0033,-12.4466,-167.034,-29.0033,-167.034,-138.084,0,-138.084,-134.772	1/1:27:0,23,0,2:0:0:23,0,2:769,0,68:-63.961,-6.92369,0,-63.961,-6.92369,-63.961,-58.5655,-1.46901,-58.5655,-57.9634	1/3:48:0,36,0,7:0:0:36,0,7:1129,0,222:-97.6264,-16.0024,-5.16531,-97.6264,-16.0024,-97.6264,-81.6482,0,-81.6482,-79.541	1/3:36:0,29,0,6:0:0:29,0,6:918,0,196:-80.976,-14.4941,-5.76427,-80.976,-14.4941,-80.976,-66.5401,0,-66.5401,-64.7339	1/3:72:0,55,0,13:0:0:55,0,13:1580,0,445:-145.475,-34.5446,-17.988,-145.475,-34.5446,-145.475,-110.975,0,-110.975,-107.062	1/3:55:0,44,0,5:0:0:44,0,5:1423,0,176:-118.877,-13.892,-0.646686,-118.877,-13.892,-118.877,-105.028,0,-105.028,-103.523	1/3:32:0,28,0,4:0:0:28,0,4:812,0,144:-68.4344,-11.4337,-3.00485,-68.4344,-11.4337,-68.4344,-57.332,0,-57.332,-56.1279	1/1:63:0,58,0,5:0:0:58,0,5:1878,0,164:-153.559,-17.4597,0,-153.559,-17.4597,-153.559,-141.433,-5.03154,-141.433,-139.928	1/3:42:0,31,0,8:0:0:31,0,8:978,0,237:-87.7994,-17.0259,-7.69399,-87.7994,-17.0259,-87.7994,-70.8046,0,-70.8046,-68.3964	1/3:22:0,18,0,4:0:0:18,0,4:572,0,128:-50.8795,-9.52258,-4.10404,-50.8795,-9.52258,-50.8795,-41.6466,0,-41.6466,-40.4425	1/3:178:0,148,0,20:0:0:148,0,20:4988,0,683:-426.669,-53.5991,-9.04671,-426.669,-53.5991,-426.669,-373.149,0,-373.149,-367.128	1/3:69:0,60,0,8:0:0:60,0,8:1719,0,284:-143.263,-22.043,-3.98118,-143.263,-22.043,-143.263,-121.29,0,-121.29,-118.881	1/2:61:0,11,47,0:0:0:11,47,0:358,1665,0:-163.338,-135.706,-132.395,-27.6775,0,-13.5291,-163.338,-135.706,-27.6775,-163.338	1/3:8:0,6,0,2:0:0:6,0,2:205,0,72:-21.3806,-6.05307,-4.24689,-21.3806,-6.05307,-21.3806,-15.6697,0,-15.6697,-15.0676	1/2:50:0,16,34,0:0:0:16,34,0:446,1190,0:-128.55,-97.1614,-92.3449,-31.6716,0,-21.4366,-128.55,-97.1614,-31.6716,-128.55	1/3:15:0,13,0,2:0:0:13,0,2:361,0,68:-31.0762,-5.65904,-1.74565,-31.0762,-5.65904,-31.0762,-25.7362,0,-25.7362,-25.1342	1/2:235:0,91,127,11:0:0:91,127,11:3082,4465,373:-599.001,-363.459,-336.065,-235.56,0,-197.329,-569.284,-333.742,-205.84,-565.972	1/2:80:0,33,41,4:0:0:33,41,4:941,1457,140:-184.945,-118.761,-108.828,-66.1816,0,-53.8393,-174.099,-107.918,-55.3292,-172.895	1/1:30:0,27,0,1:0:0:27,0,1:784,0,32:-63.2598,-8.12781,0,-63.2598,-8.12781,-63.2598,-60.7364,-5.57509,-60.7364,-60.4354	1/3:113:0,93,0,11:0:0:93,0,11:3153,0,384:-272.743,-30.5028,-2.50706,-272.743,-30.5028,-272.743,-242.284,0,-242.284,-238.973	1/1:127:0,100,8,7:0:0:100,8,7:2808,273,252:-227.958,-30.103,0,-205.802,-7.93316,-203.394,-208.298,-10.4296,-186.141,-206.19	1/2:91:0,34,43,6:0:0:34,43,6:1119,1548,197:-210.592,-126.375,-116.14,-84.2573,0,-71.313,-195.276,-111.061,-68.938,-193.47	1/2:4:0,2,2,0:0:0:2,2,0:58,72,0:-10.2613,-6.23466,-5.6326,-4.3365,0,-3.73444,-10.2613,-6.23466,-4.3365,-10.2613	1/1:3:0,3,0,0:0:0:3,0,0:87,0,0:-7.27788,-0.90309,0,-7.27788,-0.90309,-7.27788,-7.27788,-0.90309,-7.27788,-7.27788	1/2:4:0,1,3,0:0:0:1,3,0:33,108,0:-11.5552,-9.17208,-8.87105,-2.69805,0,-1.79496,-11.5552,-9.17208,-2.69805,-11.5552	1/1:6:0,6,0,0:0:0:6,0,0:186,0,0:-15.6331,-1.80618,0,-15.6331,-1.80618,-15.6331,-15.6331,-1.80618,-15.6331,-15.6331	1/3:13:0,10,0,3:0:0:10,0,3:312,0,96:-29.9046,-7.21441,-4.20411,-29.9046,-7.21441,-29.9046,-22.9791,0,-22.9791,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chr08	1335658	.	TG	CA,CG	216923	PASS	AB=0.514032,0.484822;ABP=8.98247,9.99732;AC=152,36;AF=0.808511,0.191489;AN=188;AO=8298,1703;CIGAR=2X,1X1M;DP=10018;DPB=10018.5;DPRA=0,1.02721;EPP=18021.9,3701.03;EPPR=5.18177;GTI=1;LEN=2,1;MEANALT=1.6383,2.13333;MQM=53.7585,59.5455;MQMR=60;NS=94;NUMALT=2;ODDS=2.72718;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=294231,60775;QR=36;RO=1;RPL=0,0;RPP=18021.9,3701.03;RPPR=5.18177;RPR=8298,1703;RUN=1,1;SAF=8298,1703;SAP=18021.9,3701.03;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35,0:0:0:35,0:1250,0:-111.371,-10.5361,0,-111.371,-10.5361,-111.371	1/1:192:0,192,0:0:0:192,0:6834,0:-611.721,-57.7978,0,-611.721,-57.7978,-611.721	1/2:186:0,97,89:0:0:97,89:3445,3188:-539.107,-260.323,-231.123,-279.14,0,-252.348	1/1:184:0,184,0:0:0:184,0:6519,0:-585.771,-55.3895,0,-585.771,-55.3895,-585.771	1/2:66:0,39,27:0:0:39,27:1359,964:-189.072,-78.9429,-67.2027,-110.482,0,-102.354	1/2:17:0,14,3:0:0:14,3:504,108:-50.1812,-9.17208,-4.95766,-41.3688,0,-40.4657	1/1:80:0,80,0:0:0:80,0:2829,0:-253.917,-24.0824,0,-253.917,-24.0824,-253.917	1/1:208:0,206,0:0:0:206,0:7258,0:-649.428,-62.0122,0,-649.428,-62.0122,-649.428	1/1:63:0,63,0:0:0:63,0:2227,0:-199.496,-18.9649,0,-199.496,-18.9649,-199.496	1/1:128:0,128,0:0:0:128,0:4523,0:-406.723,-38.5318,0,-406.723,-38.5318,-406.723	1/1:122:0,122,0:0:0:122,0:4347,0:-389.892,-36.7257,0,-389.892,-36.7257,-389.892	1/1:92:0,91,1:0:0:91,1:3248,36:-290.523,-27.3937,0,-287.585,-24.0965,-287.284	1/1:94:0,94,0:0:0:94,0:3320,0:-297.057,-28.2968,0,-297.057,-28.2968,-297.057	1/1:135:0,135,0:0:0:135,0:4834,0:-433.662,-40.6391,0,-433.662,-40.6391,-433.662	1/1:84:0,82,2:0:0:82,2:2927,72:-262.724,-24.6845,0,-256.849,-18.4498,-256.247	1/1:76:0,76,0:0:0:76,0:2721,0:-243.653,-22.8783,0,-243.653,-22.8783,-243.653	1/1:101:0,101,0:0:0:101,0:3589,0:-321.339,-30.404,0,-321.339,-30.404,-321.339	1/1:80:0,80,0:0:0:80,0:2849,0:-254.845,-24.0824,0,-254.845,-24.0824,-254.845	1/1:70:0,70,0:0:0:70,0:2506,0:-224.731,-21.0721,0,-224.731,-21.0721,-224.731	1/1:257:0,256,1:0:0:256,1:9075,36:-813.414,-77.0637,0,-810.477,-73.7664,-810.176	1/1:134:0,134,0:0:0:134,0:4741,0:-424.584,-40.338,0,-424.584,-40.338,-424.584	1/2:52:0,16,36:0:0:16,36:559,1280:-150.061,-104.664,-99.8479,-45.7477,0,-34.9106	1/1:75:0,75,0:0:0:75,0:2688,0:-241.529,-22.5773,0,-241.529,-22.5773,-241.529	1/2:177:0,101,76:0:0:101,76:3577,2698:-510.281,-220.162,-189.758,-290.472,0,-267.594	1/1:80:0,79,1:0:0:79,1:2787,36:-250.176,-23.7814,0,-247.239,-20.4851,-246.938	1/2:224:0,114,110:0:0:114,110:4024,3929:-646.937,-320.348,-286.031,-326.943,0,-293.83	1/2:224:0,98,126:0:0:98,126:3448,4516:-647.364,-368.62,-339.119,-279.097,0,-241.167	1/1:50:0,50,0:0:0:50,0:1768,0:-159.054,-15.0515,0,-159.054,-15.0515,-159.054	1/1:259:0,258,0:0:0:258,0:9191,0:-825.432,-77.6657,0,-825.432,-77.6657,-825.432	1/1:112:0,112,0:0:0:112,0:3964,0:-356.111,-33.7154,0,-356.111,-33.7154,-356.111	1/2:113:0,59,54:0:0:59,54:2080,1928:-326.535,-157.539,-139.779,-169.35,0,-153.094	1/2:9:0,6,3:0:0:6,3:216,108:-26.7687,-9.17208,-7.3659,-17.9563,0,-17.0532	1/1:12:0,12,0:0:0:12,0:416,0:-36.7551,-3.61236,0,-36.7551,-3.61236,-36.7551	1/2:8:0,5,3:0:0:5,3:176,108:-23.3336,-9.17208,-7.66693,-14.517,0,-13.6139	1/1:4:0,4,0:0:0:4,0:144,0:-13.2801,-1.20412,0,-13.2801,-1.20412,-13.2801	1/1:33:0,33,0:0:0:33,0:1160,0:-103.738,-9.93399,0,-103.738,-9.93399,-103.738	1/1:187:0,187,0:0:0:187,0:6617,0:-594.754,-56.2926,0,-594.754,-56.2926,-594.754	1/2:135:0,53,82:0:0:53,82:1896,2927:-393.094,-238.935,-222.981,-154.515,0,-129.831	1/2:76:0,40,36:0:0:40,36:1432,1276:-220.212,-104.234,-92.1929,-116.333,0,-105.496	1/1:10:0,9,0:0:0:9,0:311,0:-28.0229,-2.70927,0,-28.0229,-2.70927,-28.0229	1/2:113:0,63,50:0:0:63,50:2214,1770:-323.717,-144.511,-125.546,-179.558,0,-164.506	1/2:42:0,28,14:0:0:28,14:991,504:-121.934,-41.4837,-33.0548,-80.8081,0,-76.5937	1/2:148:0,82,65:0:0:82,65:2904,2312:-424.256,-188.405,-163.721,-235.853,0,-216.286	1/2:73:0,34,39:0:0:34,39:1224,1387:-212.98,-113.386,-103.151,-99.952,0,-88.2118	1/1:70:0,70,0:0:0:70,0:2455,0:-220.073,-21.0721,0,-220.073,-21.0721,-220.073	1/2:92:0,59,33:0:0:59,33:2066,1180:-264.499,-96.5632,-78.8024,-168.29,0,-158.356	1/2:104:0,62,42:0:0:62,42:2197,1487:-298.282,-121.479,-102.815,-177.156,0,-164.513	1/2:225:0,134,89:0:0:134,89:4751,3175:-645.144,-258.805,-218.467,-386.335,0,-359.543	1/1:114:0,113,0:0:0:113,0:3991,0:-358.588,-34.0164,0,-358.588,-34.0164,-358.588	1/1:201:0,200,1:0:0:200,1:7139,36:-641.308,-60.206,0,-638.37,-56.9088,-638.069	1/1:214:0,213,0:0:0:213,0:7567,0:-678.85,-64.1194,0,-678.85,-64.1194,-678.85	1/2:11:0,7,4:0:0:7,4:252,144:-32.6515,-12.1061,-9.99886,-20.9051,0,-19.701	1/2:171:0,87,84:0:0:87,84:3082,3008:-495.42,-245.6,-219.411,-250.175,0,-224.889	1/1:30:0,30,0:0:0:30,0:1063,0:-95.9472,-9.0309,0,-95.9472,-9.0309,-95.9472	1/2:8:0,4,4:0:0:4,4:144,144:-23.8261,-12.1095,-10.9054,-12.076,0,-10.8719	1/2:162:0,95,67:0:0:95,67:3354,2391:-467.496,-195.134,-166.536,-272.717,0,-252.548	1/2:46:0,29,17:0:0:29,17:1027,589:-131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chr08	1398797	.	TG	CG,CT	344978	PASS	AB=0.553914,0.443881;ABP=117.507,127.065;AC=152,36;AF=0.808511,0.191489;AN=188;AO=11123,2039;CIGAR=1X1M,2X;DP=13192;DPB=13192;DPRA=0,0.993319;EPP=24147.6,4430.64;EPPR=24.725;GTI=3;LEN=1,2;MEANALT=1.74468,2.24;MQM=55.1682,26.5199;MQMR=60;NS=94;NUMALT=2;ODDS=3.66255;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=392667,71950;QR=328;RO=10;RPL=5917,982;RPP=101.7,9.00075;RPPR=16.9077;RPR=5206,1057;RUN=1,1;SAF=5918,982;SAP=102.256,9.00075;SAR=5205,1057;SRF=9;SRP=16.9077;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43,0:0:0:43,0:1499,0:-134.965,-12.9443,0,-134.965,-12.9443,-134.965	1/1:253:2,250,0:2:70:250,0:8929,0:-793.706,-69.5547,0,-794.308,-75.2575,-800.003	1/2:351:0,169,181:0:0:169,181:5910,6414:-837.553,-357.623,-306.749,-479.962,0,-425.475	1/1:345:0,345,0:0:0:345,0:12192,0:-1094.86,-103.855,0,-1094.86,-103.855,-1094.86	1/2:73:0,55,18:0:0:55,18:1942,622:-194.516,-36.6275,-20.0709,-158.17,0,-152.751	1/2:93:0,50,43:0:0:50,43:1742,1507:-225.974,-84.9842,-69.9327,-141.286,0,-128.341	1/1:209:0,209,0:0:0:209,0:7359,0:-660.926,-62.9153,0,-660.926,-62.9153,-660.926	1/1:229:0,228,0:0:0:228,0:8001,0:-717.442,-68.6348,0,-717.442,-68.6348,-717.442	1/1:169:0,169,0:0:0:169,0:5976,0:-536.321,-50.8741,0,-536.321,-50.8741,-536.321	1/1:176:0,175,0:0:0:175,0:6215,0:-558.021,-52.6803,0,-558.021,-52.6803,-558.021	1/1:148:0,146,1:0:0:146,1:5085,23:-456.677,-43.9504,0,-455.279,-42.6365,-454.978	1/1:152:0,151,0:0:0:151,0:5268,0:-472.298,-45.4555,0,-472.298,-45.4555,-472.298	1/1:173:0,172,0:0:0:172,0:6017,0:-540.182,-51.7772,0,-540.182,-51.7772,-540.182	1/1:140:0,140,0:0:0:140,0:4898,0:-440.28,-42.1442,0,-440.28,-42.1442,-440.28	1/1:133:0,133,0:0:0:133,0:4703,0:-422.851,-40.037,0,-422.851,-40.037,-422.851	1/1:137:0,137,0:0:0:137,0:4864,0:-437.138,-41.2411,0,-437.138,-41.2411,-437.138	1/1:115:0,115,0:0:0:115,0:4075,0:-365.512,-34.6185,0,-365.512,-34.6185,-365.512	1/1:121:0,121,0:0:0:121,0:4290,0:-384.65,-36.4246,0,-384.65,-36.4246,-384.65	1/1:83:0,83,0:0:0:83,0:2914,0:-261.545,-24.9855,0,-261.545,-24.9855,-261.545	1/1:216:0,216,0:0:0:216,0:7705,0:-691.704,-65.0225,0,-691.704,-65.0225,-691.704	1/1:222:1,221,0:1:36:221,0:7834,0:-700.443,-63.2304,0,-700.744,-66.5276,-703.682	1/2:53:0,25,28:0:0:25,28:886,991:-129.242,-57.2542,-49.7285,-72.2964,0,-63.8676	1/1:94:0,92,1:0:0:92,1:3225,36:-289.75,-27.6948,0,-287.75,-25.7424,-287.449	1/2:118:0,77,41:0:0:77,41:2720,1437:-306.699,-85.3902,-62.2109,-221.603,0,-209.261	1/1:99:1,98,0:1:28:98,0:3469,0:-309.027,-27.0022,0,-309.328,-29.5009,-311.546	1/2:308:0,172,135:0:0:172,135:6104,4750:-769.79,-273.84,-222.063,-495.994,0,-455.355	1/2:342:0,194,147:0:0:194,147:6801,5210:-854.891,-301.993,-243.593,-552.839,0,-508.587	1/1:62:0,62,0:0:0:62,0:2173,0:-195.43,-18.6639,0,-195.43,-18.6639,-195.43	1/1:318:0,317,0:0:0:317,0:11188,0:-1004.21,-95.4265,0,-1004.21,-95.4265,-1004.21	1/1:149:0,138,11:0:0:138,11:4877,394:-437.95,-41.5421,0,-413.872,-17.1816,-410.561	1/2:179:0,100,79:0:0:100,79:3539,2827:-447.734,-160.454,-130.351,-287.58,0,-263.799	1/2:15:0,11,4:0:0:11,4:396,144:-41.2715,-8.91983,-5.6085,-32.6482,0,-31.4441	1/1:26:0,26,0:0:0:26,0:904,0:-81.4617,-7.82678,0,-81.4617,-7.82678,-81.4617	1/2:5:0,4,1:0:0:4,1:144,25:-13.7463,-1.94568,-0.741557,-12.052,0,-11.751	1/1:19:0,19,0:0:0:19,0:680,0:-61.4268,-5.71957,0,-61.4268,-5.71957,-61.4268	1/1:24:0,24,0:0:0:24,0:852,0:-76.9145,-7.22472,0,-76.9145,-7.22472,-76.9145	1/1:364:0,362,2:0:0:362,2:12725,45:-1141.53,-108.973,0,-1138.11,-105.329,-1137.5	1/2:102:0,64,38:0:0:64,38:2274,1335:-262.435,-77.3816,-58.1156,-185.349,0,-173.909	1/2:109:0,52,57:0:0:52,57:1813,2004:-260.347,-113.394,-97.7403,-147.255,0,-130.097	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:223:0,136,86:0:0:136,86:4825,3035:-569.889,-177.459,-136.519,-392.369,0,-366.481	1/2:75:0,44,31:0:0:44,31:1539,1110:-189.105,-64.3067,-51.0614,-125.097,0,-115.765	1/2:172:0,113,59:0:0:113,59:4014,2090:-447.682,-121.271,-87.2551,-326.703,0,-308.943	1/2:120:0,64,56:0:0:64,56:2268,1979:-297.844,-113.734,-94.4683,-184.412,0,-167.554	1/1:128:0,128,0:0:0:128,0:4418,0:-396.624,-38.5318,0,-396.624,-38.5318,-396.624	1/2:98:0,51,47:0:0:51,47:1824,1667:-244.05,-95.467,-80.1145,-148.889,0,-134.741	1/2:108:0,61,47:0:0:61,47:2160,1664:-269.383,-93.8266,-75.4638,-175.854,0,-161.705	1/2:197:0,115,82:0:0:115,82:4083,2872:-498.026,-166.229,-131.611,-332.095,0,-307.41	1/1:117:0,117,0:0:0:117,0:4167,0:-373.947,-35.2205,0,-373.947,-35.2205,-373.947	1/1:193:0,192,1:0:0:192,1:6797,36:-609.907,-57.7978,0,-607.127,-54.6752,-606.826	1/1:170:0,168,1:0:0:168,1:5967,25:-534.767,-50.573,0,-532.823,-48.6754,-532.522	1/2:4:0,3,1:0:0:3,1:108,36:-11.2298,-2.34757,-1.44448,-9.17083,0,-8.8698	1/2:160:0,108,52:0:0:108,52:3847,1840:-415.968,-103.105,-70.5934,-313.149,0,-297.496	1/2:85:0,40,45:0:0:40,45:1394,1599:-203.85,-90.8465,-78.8053,-113.309,0,-99.7624	1/2:8:0,3,5:0:0:3,5:108,167:-18.7862,-9.95721,-9.05412,-9.14675,0,-7.6416	1/2:185:0,97,88:0:0:97,88:3413,3111:-458.87,-181.904,-1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chr08	1398827	.	AGA	AAA,AA	129803	PASS	AB=0.565481,0.432784;ABP=88.8936,93.504;AC=153,33;AF=0.822581,0.177419;AN=186;AO=5360,1006;CIGAR=1M1X1M,1M1D1M;DP=6381;DPB=6045.67;DPRA=0,1.07967;EPP=11642.1,2187.51;EPPR=11.6962;GTI=1;LEN=1,1;MEANALT=1.54839,2.1;MQM=58.5198,25.9851;MQMR=59.75;NS=93;NUMALT=2;ODDS=0.8256;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=191059,35495;QR=144;RO=4;RPL=5360,1006;RPP=11642.1,2187.51;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=11642.1,2187.51;SAR=5360,1006;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43,0:0:0:43,0:1530,0:-137.894,-12.9443,0,-137.894,-12.9443,-137.894	1/1:65:0,65,0:0:0:65,0:2318,0:-208.574,-19.567,0,-208.574,-19.567,-208.574	1/2:267:0,137,130:0:0:137,130:4880,4548:-652.464,-255.592,-214.351,-397.174,0,-358.04	1/1:211:0,211,0:0:0:211,0:7526,0:-676.128,-63.5173,0,-676.128,-63.5173,-676.128	1/2:37:0,26,11:0:0:26,11:924,379:-96.968,-21.6617,-13.8349,-75.5873,0,-72.276	1/2:45:0,29,16:0:0:29,16:1023,556:-115.176,-31.8641,-23.1342,-83.6001,0,-78.7836	1/1:116:0,114,0:0:0:114,0:4035,0:-362.384,-34.3174,0,-362.384,-34.3174,-362.384	1/1:129:0,129,0:0:0:129,0:4590,0:-412.708,-38.8329,0,-412.708,-38.8329,-412.708	1/1:65:0,65,0:0:0:65,0:2332,0:-210.072,-19.567,0,-210.072,-19.567,-210.072	1/1:71:0,71,0:0:0:71,0:2524,0:-227.272,-21.3731,0,-227.272,-21.3731,-227.272	1/1:95:0,95,0:0:0:95,0:3359,0:-302.274,-28.5979,0,-302.274,-28.5979,-302.274	1/1:92:0,92,0:0:0:92,0:3266,0:-294.161,-27.6948,0,-294.161,-27.6948,-294.161	1/1:80:0,80,0:0:0:80,0:2829,0:-254.726,-24.0824,0,-254.726,-24.0824,-254.726	1/1:75:0,75,0:0:0:75,0:2663,0:-239.77,-22.5773,0,-239.77,-22.5773,-239.77	1/1:67:0,66,0:0:0:66,0:2364,0:-212.449,-19.868,0,-212.449,-19.868,-212.449	1/1:67:0,67,0:0:0:67,0:2393,0:-215.389,-20.169,0,-215.389,-20.169,-215.389	1/1:49:0,49,0:0:0:49,0:1764,0:-158.976,-14.7505,0,-158.976,-14.7505,-158.976	1/1:39:0,39,0:0:0:39,0:1391,0:-125.156,-11.7402,0,-125.156,-11.7402,-125.156	1/1:36:0,35,0:0:0:35,0:1239,0:-111.383,-10.5361,0,-111.383,-10.5361,-111.383	1/1:91:0,91,0:0:0:91,0:3221,0:-289.943,-27.3937,0,-289.943,-27.3937,-289.943	1/1:114:0,114,0:0:0:114,0:4051,0:-364.654,-34.3174,0,-364.654,-34.3174,-364.654	1/2:30:0,18,12:0:0:18,12:648,428:-77.0914,-24.2268,-18.8083,-53.1616,0,-49.5492	1/1:83:0,82,1:0:0:82,1:2928,36:-263.267,-24.6845,0,-261.266,-22.4268,-260.965	1/2:63:0,42,21:0:0:42,21:1481,744:-162.659,-42.1423,-29.499,-120.805,0,-114.483	1/1:54:0,54,0:0:0:54,0:1909,0:-171.764,-16.2556,0,-171.764,-16.2556,-171.764	1/2:118:0,69,49:0:0:69,49:2442,1740:-296.487,-97.7082,-76.9372,-199.074,0,-184.323	1/2:201:0,118,82:0:0:118,82:4233,2899:-508.592,-163.41,-127.888,-345.23,0,-320.545	1/1:27:0,27,0:0:0:27,0:959,0:-86.5225,-8.12781,0,-86.5225,-8.12781,-86.5225	1/1:168:0,168,0:0:0:168,0:5996,0:-539.273,-50.573,0,-539.273,-50.573,-539.273	1/1:53:0,51,2:0:0:51,2:1815,72:-163.236,-15.3525,0,-159.237,-11.093,-158.635	1/2:94:0,51,42:0:0:51,42:1813,1459:-231.035,-83.3024,-67.9499,-147.747,0,-135.104	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:15:0,15,0:0:0:15,0:533,0:-48.2803,-4.51545,0,-48.2803,-4.51545,-48.2803	1/2:5:0,4,1:0:0:4,1:144,36:-14.0333,-2.25768,-1.05356,-12.052,0,-11.751	1/1:16:0,16,0:0:0:16,0:576,0:-52.1027,-4.81648,0,-52.1027,-4.81648,-52.1027	1/1:17:0,17,0:0:0:17,0:612,0:-55.3269,-5.11751,0,-55.3269,-5.11751,-55.3269	1/1:167:0,165,0:0:0:165,0:5924,0:-532.376,-49.67,0,-532.376,-49.67,-532.376	1/2:47:0,23,24:0:0:23,24:824,860:-115.5,-48.2487,-41.3251,-67.5596,0,-60.3349	1/2:53:0,26,27:0:0:26,27:919,959:-128.921,-54.0625,-46.2357,-75.1632,0,-67.0354	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:112:0,76,36:0:0:76,36:2702,1276:-292.01,-72.069,-49.1907,-220.228,0,-209.391	1/2:32:0,17,15:0:0:17,15:608,540:-79.5656,-29.9425,-24.8249,-49.9253,0,-45.4098	1/2:97:0,66,31:0:0:66,31:2355,1092:-253.652,-61.8421,-41.9742,-192.096,0,-182.764	1/2:55:1,30,24:1:36:30,24:1073,852:-131.99,-44.8506,-38.7613,-84.4438,0,-80.1566	1/1:51:0,51,0:0:0:51,0:1816,0:-163.381,-15.3525,0,-163.381,-15.3525,-163.381	1/2:49:0,28,21:0:0:28,21:985,752:-122.139,-41.9251,-33.4962,-80.5101,0,-74.1885	1/2:59:0,32,27:0:0:32,27:1152,964:-148.2,-54.2038,-44.5708,-94.2989,0,-86.1711	1/2:86:0,44,42:0:0:44,42:1580,1492:-212.87,-84.0799,-70.8346,-129.096,0,-116.453	1/1:48:0,48,0:0:0:48,0:1720,0:-154.874,-14.4494,0,-154.874,-14.4494,-154.874	1/1:96:0,96,0:0:0:96,0:3444,0:-309.956,-28.8989,0,-309.956,-28.8989,-309.956	1/1:48:0,48,0:0:0:48,0:1724,0:-155.237,-14.4494,0,-155.237,-14.4494,-155.237	1/1:3:0,3,0:0:0:3,0:108,0:-10.0739,-0.90309,0,-10.0739,-0.90309,-10.0739	1/2:72:0,46,26:0:0:46,26:1644,924:-185.878,-51.8405,-37.9932,-134.329,0,-126.502	1/2:60:0,30,30:0:0:30,30:1065,1060:-146.533,-60.058,-51.0271,-86.7795,0,-77.7486	.:.:.:.:.:.:.:.	1/2:85:0,43,42:0:0:43,42:1525,1487:-208.647,-84.3995,-71.4552,-124.552,0,-111.909	1/2:34:0,25,9:0:0:25,9:896,324:-91.3694,-18.2721,-10.7464,-73.3802,0,-70.6709	1/1:8:0,8,0:0:0:8,0:288,0:-26.2601,-2.40824,0,-26.2601,-2.40824,-26.2601	1/2:7:0,2,5:0:0:2,5:68,172:-15.678,-10.1622,-9.56015,-5.83012,0,-4.32497	1/1:104:0,104,0:0:0:104,0:3703,0:-332.926,-31.3071,0,-332.926,-31.3071,-332.926	1/1:86:0,85,1:0:0:85,1:3043,36:-273.763,-25.5876,0,-271.763,-23.3299,-271.462	1/1:4:0,4,0:0:0:4,0:144,0:-13.3094,-1.20412,0,-13.3094,-1.20412,-13.3094	1/2:37:0,24,13:0:0:24,13:860,449:-95.7264,-25.7048,-18.48,-70.31,0,-66.3966	1/1:67:0,67,0:0:0:67,0:2400,0:-216.097,-20.169,0,-216.097,-20.169,-216.097	1/1:77:0,77,0:0:0:77,0:2748,0:-247.347,-23.1793,0,-247.347,-23.1793,-247.347	1/1:41:0,40,1:0:0:40,1:1428,36:-128.455,-12.0412,0,-126.455,-9.78352,-126.154	1/1:123:0,122,1:0:0:122,1:4323,36:-388.031,-36.7257,0,-386.03,-34.468,-385.729	1/2:112:0,53,59:0:0:53,59:1896,2075:-272.176,-117.585,-101.631,-154.9,0,-137.139	1/1:66:0,66,0:0:0:66,0:2354,0:-212.06,-19.868,0,-212.06,-19.868,-212.06	1/1:54:0,54,0:0:0:54,0:1936,0:-174.401,-16.2556,0,-174.401,-16.2556,-174.401	1/1:47:0,47,0:0:0:47,0:1667,0:-150.078,-14.1484,0,-150.078,-14.1484,-150.078	1/1:35:0,35,0:0:0:35,0:1256,0:-113.286,-10.5361,0,-113.286,-10.5361,-113.286	1/1:76:0,76,0:0:0:76,0:2719,0:-244.162,-22.8783,0,-244.162,-22.8783,-244.162	1/2:50:0,31,19:0:0:31,19:1108,680:-128.645,-38.2397,-28.9077,-90.6991,0,-84.9795	1/1:108:0,107,1:0:0:107,1:3795,36:-341.209,-32.2102,0,-338.499,-29.1651,-338.198	1/1:93:0,93,0:0:0:93,0:3324,0:-298.966,-27.9958,0,-298.966,-27.9958,-298.966	1/1:48:0,48,0:0:0:48,0:1712,0:-154.265,-14.4494,0,-154.265,-14.4494,-154.265	1/1:65:0,63,1:0:0:63,1:2248,32:-202.194,-18.9649,0,-200.244,-17.0278,-199.943	1/2:10:0,3,7:0:0:3,7:108,244:-23.0104,-14.1665,-13.2634,-9.17208,0,-7.06487	1/1:80:0,80,0:0:0:80,0:2860,0:-257.588,-24.0824,0,-257.588,-24.0824,-257.588	1/2:52:0,37,14:0:0:37,14:1329,504:-135.799,-27.8539,-16.7157,-107.968,0,-103.753	1/1:91:0,90,0:0:0:90,0:3208,0:-288.509,-27.0927,0,-288.509,-27.0927,-288.509	1/1:40:1,39,0:1:36:39,0:1383,0:-121.096,-8.44293,0,-121.397,-11.7402,-124.334	1/1:71:0,71,0:0:0:71,0:2535,0:-228.259,-21.3731,0,-228.259,-21.3731,-228.259	1/2:40:0,21,19:0:0:21,19:744,664:-98.0341,-37.8291,-31.5075,-60.505,0,-54.7854	1/1:83:2,81,0:2:72:81,0:2890,0:-253.199,-18.1492,0,-253.801,-24.3834,-259.675	1/1:19:0,19,0:0:0:19,0:676,0:-61.1321,-5.71957,0,-61.1321,-5.71957,-61.1321	1/2:45:0,28,17:0:0:28,17:992,591:-114.781,-33.9427,-25.5139,-81.1297,0,-76.0122	1/1:65:0,65,0:0:0:65,0:2336,0:-210.458,-19.567,0,-210.458,-19.567,-210.458	1/2:92:0,53,39:0:0:53,39:1887,1366:-232.198,-78.4721,-62.5176,-154.024,0,-142.284	1/2:102:0,52,50:0:0:52,50:1848,1784:-250.497,-100.145,-84.4912,-150.656,0,-135.604	1/2:58:0,20,38:0:0:20,38:720,1311:-134.607,-75.9702,-69.9496,-58.9599,0,-47.5208	1/1:58:0,58,0:0:0:58,0:2055,0:-185.098,-17.4597,0,-185.098,-17.4597,-185.098	1/1:108:0,108,0:0:0:108,0:3841,0:-345.438,-32.5112,0,-345.438,-32.5112,-345.438
chr08	1398833	.	GAGGG	TAGGG,TAGGA	131920	PASS	AB=0.555789,0.441263;ABP=67.2173,74.1807;AC=153,33;AF=0.822581,0.177419;AN=186;AO=5411,1059;CIGAR=1X4M,1X3M1X;DP=6494;DPB=6494.2;DPRA=0,1.07327;EPP=11752.8,2302.6;EPPR=5.18177;GTI=1;LEN=1,5;MEANALT=1.67742,2.2093;MQM=58.5274,26.0076;MQMR=60;NS=93;NUMALT=2;ODDS=4.05839;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=193386,37298;QR=35;RO=1;RPL=5411,1059;RPP=11752.8,2302.6;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=11752.8,2302.6;SAR=5411,1059;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43,0:0:0:43,0:1535,0:-138.326,-12.9443,0,-138.326,-12.9443,-138.326	1/1:63:0,63,0:0:0:63,0:2262,0:-203.571,-18.9649,0,-203.571,-18.9649,-203.571	1/2:275:0,136,137:0:0:136,137:4857,4819:-664.986,-269.7,-228.759,-395.269,0,-354.028	1/1:210:0,210,0:0:0:210,0:7491,0:-672.993,-63.2163,0,-672.993,-63.2163,-672.993	1/2:39:0,28,11:0:0:28,11:985,396:-102.145,-21.9391,-13.5102,-80.4862,0,-77.1749	1/2:47:0,30,17:0:0:30,17:1061,581:-119.861,-33.4267,-24.3958,-86.7222,0,-81.6047	1/1:118:0,117,0:0:0:117,0:4174,0:-374.677,-35.2205,0,-374.677,-35.2205,-374.677	1/1:131:0,131,0:0:0:131,0:4697,0:-422.311,-39.4349,0,-422.311,-39.4349,-422.311	1/1:67:0,65,0:0:0:65,0:2320,0:-208.753,-19.567,0,-208.753,-19.567,-208.753	1/1:71:0,71,0:0:0:71,0:2552,0:-229.762,-21.3731,0,-229.762,-21.3731,-229.762	1/1:102:0,101,0:0:0:101,0:3609,0:-323.564,-30.404,0,-323.564,-30.404,-323.564	1/1:90:0,90,0:0:0:90,0:3240,0:-291.82,-27.0927,0,-291.82,-27.0927,-291.82	1/1:80:0,80,0:0:0:80,0:2872,0:-258.584,-24.0824,0,-258.584,-24.0824,-258.584	1/1:78:0,77,0:0:0:77,0:2772,0:-249.116,-23.1793,0,-249.116,-23.1793,-249.116	1/1:69:0,67,0:0:0:67,0:2408,0:-216.533,-20.169,0,-216.533,-20.169,-216.533	1/1:68:0,68,0:0:0:68,0:2437,0:-219.347,-20.47,0,-219.347,-20.47,-219.347	1/1:49:0,49,0:0:0:49,0:1764,0:-158.976,-14.7505,0,-158.976,-14.7505,-158.976	1/1:38:0,38,0:0:0:38,0:1362,0:-122.566,-11.4391,0,-122.566,-11.4391,-122.566	1/1:39:0,39,0:0:0:39,0:1404,0:-126.549,-11.7402,0,-126.549,-11.7402,-126.549	1/1:90:0,90,0:0:0:90,0:3220,0:-289.73,-27.0927,0,-289.73,-27.0927,-289.73	1/1:113:0,113,0:0:0:113,0:4029,0:-362.672,-34.0164,0,-362.672,-34.0164,-362.672	1/2:31:0,18,13:0:0:18,13:644,445:-78.43,-25.9257,-20.5072,-52.8008,0,-48.8874	1/1:82:0,80,1:0:0:80,1:2872,36:-258.215,-24.0824,0,-256.215,-22.1301,-255.914	1/2:64:0,42,21:0:0:42,21:1512,738:-165.006,-41.703,-29.0597,-123.242,0,-116.92	1/1:54:0,54,0:0:0:54,0:1924,0:-173.092,-16.2556,0,-173.092,-16.2556,-173.092	1/2:125:0,71,54:0:0:71,54:2548,1877:-314.705,-107.036,-85.6628,-207.968,0,-191.712	1/2:208:0,123,85:0:0:123,85:4382,3001:-526.322,-169.307,-132.28,-357.311,0,-331.724	1/1:25:0,24,0:0:0:24,0:860,0:-77.2939,-7.22472,0,-77.2939,-7.22472,-77.2939	1/1:168:0,165,0:0:0:165,0:5893,0:-529.801,-49.67,0,-529.801,-49.67,-529.801	1/1:53:0,51,2:0:0:51,2:1832,71:-164.767,-15.3525,0,-160.776,-11.1026,-160.174	1/2:98:0,54,44:0:0:54,44:1935,1564:-245.623,-88.102,-71.8463,-157.822,0,-144.577	1/1:6:0,6,0:0:0:6,0:208,0:-19.0591,-1.80618,0,-19.0591,-1.80618,-19.0591	1/1:15:0,15,0:0:0:15,0:540,0:-48.8914,-4.51545,0,-48.8914,-4.51545,-48.8914	1/2:5:0,3,1:0:0:3,1:108,31:-10.81,-1.93113,-1.02804,-8.89503,0,-8.594	1/1:16:0,16,0:0:0:16,0:561,0:-50.7808,-4.81648,0,-50.7808,-4.81648,-50.7808	1/1:18:0,18,0:0:0:18,0:644,0:-58.204,-5.41854,0,-58.204,-5.41854,-58.204	1/1:171:0,171,0:0:0:171,0:6124,0:-550.314,-51.4761,0,-550.314,-51.4761,-550.314	1/2:47:0,23,24:0:0:23,24:809,855:-114.078,-48.1779,-41.2542,-66.2046,0,-58.9799	1/2:55:0,27,28:0:0:27,28:968,991:-135.052,-56.0861,-47.9583,-79.2734,0,-70.8445	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:114:0,76,38:0:0:76,38:2692,1345:-294.346,-75.3035,-52.4253,-219.329,0,-207.89	1/2:33:0,17,16:0:0:17,16:612,569:-81.8044,-31.8223,-26.7048,-50.2867,0,-45.4702	1/2:101:0,68,33:0:0:68,33:2436,1168:-264.192,-65.863,-45.3929,-198.617,0,-188.683	1/2:57:1,30,26:1:35:30,26:1072,928:-135.876,-48.8633,-42.6836,-84.4187,0,-79.4395	1/1:52:0,51,0:0:0:51,0:1829,0:-164.239,-15.3525,0,-164.239,-15.3525,-164.239	1/2:51:0,28,23:0:0:28,23:996,800:-126.804,-45.6001,-37.1713,-81.5031,0,-74.5795	1/2:60:0,32,28:0:0:32,28:1152,988:-150.041,-56.0463,-46.4133,-94.2989,0,-85.8701	1/2:87:0,44,43:0:0:44,43:1576,1519:-214.31,-85.8797,-72.6344,-128.736,0,-115.792	1/1:47:0,47,0:0:0:47,0:1684,0:-151.579,-14.1484,0,-151.579,-14.1484,-151.579	1/1:99:0,99,0:0:0:99,0:3540,0:-318.42,-29.802,0,-318.42,-29.802,-318.42	1/1:48:0,47,1:0:0:47,1:1684,36:-151.342,-14.1484,0,-148.461,-10.9133,-148.16	1/1:3:0,3,0:0:0:3,0:108,0:-10.0739,-0.90309,0,-10.0739,-0.90309,-10.0739	1/2:72:0,46,26:0:0:46,26:1644,920:-185.829,-51.791,-37.9436,-134.329,0,-126.502	1/2:66:0,32,34:0:0:32,34:1142,1185:-160.538,-67.7412,-58.1083,-93.103,0,-82.868	.:.:.:.:.:.:.:.	1/2:84:0,42,42:0:0:42,42:1492,1491:-206.114,-84.5333,-71.89,-121.886,0,-109.243	1/2:35:0,24,11:0:0:24,11:837,392:-91.2562,-23.1347,-15.91,-68.4124,0,-65.101	1/1:8:0,8,0:0:0:8,0:284,0:-25.8966,-2.40824,0,-25.8966,-2.40824,-25.8966	1/2:7:0,2,5:0:0:2,5:72,179:-16.1025,-10.2556,-9.65356,-6.17466,0,-4.66951	1/1:104:0,103,0:0:0:103,0:3622,0:-325.52,-31.0061,0,-325.52,-31.0061,-325.52	1/1:87:0,86,1:0:0:86,1:3092,36:-278.163,-25.8886,0,-276.163,-23.6309,-275.862	1/1:4:0,4,0:0:0:4,0:140,0:-12.9406,-1.20412,0,-12.9406,-1.20412,-12.9406	1/2:40:0,24,16:0:0:24,16:864,554:-101.986,-31.6103,-24.3855,-70.6702,0,-65.8537	1/1:67:0,67,0:0:0:67,0:2404,0:-216.483,-20.169,0,-216.483,-20.169,-216.483	1/1:77:0,76,1:0:0:76,1:2712,35:-243.833,-22.8783,0,-241.022,-19.7207,-240.721	1/1:40:0,38,1:0:0:38,1:1364,35:-122.694,-11.4391,0,-120.703,-9.4964,-120.402	1/1:127:0,125,1:0:0:125,1:4464,36:-400.468,-37.6288,0,-398.467,-35.6288,-398.166	1/2:112:0,51,60:0:0:51,60:1832,2116:-268.586,-119.108,-103.756,-149.499,0,-131.437	1/1:67:0,67,0:0:0:67,0:2404,0:-216.559,-20.169,0,-216.559,-20.169,-216.559	1/1:55:0,55,0:0:0:55,0:1976,0:-177.999,-16.5567,0,-177.999,-16.5567,-177.999	1/1:49:0,49,0:0:0:49,0:1752,0:-157.703,-14.7505,0,-157.703,-14.7505,-157.703	1/1:35:0,35,0:0:0:35,0:1252,0:-112.926,-10.5361,0,-112.926,-10.5361,-112.926	1/1:77:0,75,1:0:0:75,1:2651,33:-237.88,-22.5773,0,-235.23,-19.9129,-234.929	1/2:51:0,32,19:0:0:32,19:1148,675:-131.884,-38.1812,-28.5482,-93.9969,0,-88.2773	1/1:114:0,114,0:0:0:114,0:4076,0:-366.454,-34.3174,0,-366.454,-34.3174,-366.454	1/1:94:0,94,0:0:0:94,0:3342,0:-300.576,-28.2968,0,-300.576,-28.2968,-300.576	1/1:48:0,48,0:0:0:48,0:1708,0:-153.905,-14.4494,0,-153.905,-14.4494,-153.905	1/1:65:0,64,1:0:0:64,1:2292,35:-206.186,-19.2659,0,-204.195,-17.0183,-203.894	1/2:10:0,3,7:0:0:3,7:108,248:-23.0612,-14.2175,-13.3144,-9.17208,0,-7.06487	1/1:78:0,78,0:0:0:78,0:2800,0:-252.19,-23.4803,0,-252.19,-23.4803,-252.19	1/2:51:0,36,15:0:0:36,15:1275,523:-133.128,-29.7384,-18.9013,-103.671,0,-99.1557	1/1:91:0,91,0:0:0:91,0:3248,0:-292.372,-27.3937,0,-292.372,-27.3937,-292.372	1/1:42:0,42,0:0:0:42,0:1485,0:-133.862,-12.6433,0,-133.862,-12.6433,-133.862	1/1:72:0,72,0:0:0:72,0:2552,0:-229.791,-21.6742,0,-229.791,-21.6742,-229.791	1/2:40:0,22,18:0:0:22,18:792,632:-99.0551,-34.9853,-28.3626,-64.3667,0,-58.9482	1/1:86:0,85,1:0:0:85,1:3043,36:-273.539,-25.5876,0,-270.646,-22.3401,-270.345	1/1:19:0,19,0:0:0:19,0:684,0:-61.8544,-5.71957,0,-61.8544,-5.71957,-61.8544	1/2:47:0,27,20:0:0:27,20:972,692:-119.163,-39.8276,-31.6998,-79.6343,0,-73.6137	1/1:67:0,67,0:0:0:67,0:2408,0:-216.935,-20.169,0,-216.935,-20.169,-216.935	1/2:95:0,55,40:0:0:55,40:1968,1401:-239.701,-79.6382,-63.0816,-160.36,0,-148.319	1/2:107:0,53,53:0:0:53,53:1892,1879:-259.603,-105.599,-89.6442,-154.021,0,-138.066	1/2:61:0,21,40:0:0:21,40:741,1407:-139.559,-79.4928,-73.1712,-60.3841,0,-48.3429	1/1:59:0,59,0:0:0:59,0:2106,0:-189.686,-17.7608,0,-189.686,-17.7608,-189.686	1/1:110:0,110,0:0:0:110,0:3914,0:-351.999,-33.1133,0,-351.999,-33.1133,-351.999
chr08	1417536	.	C	A	391694	PASS	AB=0.503042;ABP=3.51232;AC=152;AF=0.808511;AN=188;AO=14221;CIGAR=1X;DP=17361;DPB=17361;DPRA=0;EPP=30874.8;EPPR=6810.58;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.9973;MQMR=59.986;NS=94;NUMALT=1;ODDS=3.43974;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=507967;QR=111662;RO=3135;RPL=8498;RPP=1178.86;RPPR=176.867;RPR=5723;RUN=1;SAF=8497;SAP=1177.16;SAR=5724;SRF=1818;SRP=176.867;SRR=1317;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:103:1,102:1:36:102:3630:-323.307,-27.4078,0	1/1:230:0,230:0:0:230:8226:-740.35,-69.2369,0	0/1:286:135,151:135:4823:151:5390:-399.137,0,-348.131	1/1:380:0,380:0:0:380:13589:-1222.8,-114.391,0	0/1:119:57,62:57:2000:62:2219:-164.151,0,-144.449	0/1:107:40,67:40:1419:67:2412:-185.126,0,-95.7964	1/1:234:1,233:1:36:233:8304:-743.757,-66.8427,0	1/1:275:1,274:1:36:274:9765:-875.199,-79.185,0	1/1:246:0,246:0:0:246:8785:-790.638,-74.0534,0	1/1:230:0,230:0:0:230:8211:-739.001,-69.2369,0	1/1:146:0,146:0:0:146:5219:-469.849,-43.9504,0	1/1:188:0,188:0:0:188:6722:-605.054,-56.5936,0	1/1:167:0,167:0:0:167:5988:-539.025,-50.272,0	1/1:190:0,190:0:0:190:6821:-613.958,-57.1957,0	1/1:159:0,159:0:0:159:5703:-513.386,-47.8638,0	1/1:130:0,130:0:0:130:4601:-414.255,-39.1339,0	1/1:155:0,155:0:0:155:5497:-494.853,-46.6597,0	1/1:116:0,116:0:0:116:4134:-372.244,-34.9195,0	1/1:118:0,118:0:0:118:4193:-377.553,-35.5215,0	1/1:282:1,281:1:36:281:10046:-900.475,-81.2922,0	1/1:321:0,321:0:0:321:11418:-1027.5,-96.6306,0	0/1:126:72,54:72:2569:54:1925:-135.596,0,-193.528	1/1:251:0,250:0:0:250:8933:-803.626,-75.2575,0	0/1:158:76,82:76:2708:82:2944:-217.631,0,-196.399	1/1:143:0,143:0:0:143:5096:-458.786,-43.0473,0	0/1:610:302,308:302:10719:308:11009:-807.075,0,-780.804	0/1:455:253,202:253:9068:202:7203:-511.357,0,-679.126	1/1:83:0,83:0:0:83:2962:-266.812,-24.9855,0	1/1:455:2,453:2:72:453:16176:-1448.68,-130.132,0	1/1:210:4,206:4:144:206:7304:-644.1,-49.9027,0	0/1:238:110,128:110:3908:128:4549:-337.932,0,-280.181	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:421:0,420:0:0:420:15021:-1351.37,-126.433,0	0/1:239:114,125:114:4065:125:4469:-330.433,0,-294.09	0/1:109:61,48:61:2152:48:1699:-120.382,0,-161.133	1/1:11:0,11:0:0:11:373:-33.8952,-3.31133,0	0/1:220:81,139:81:2875:139:4953:-379.692,0,-192.761	0/1:78:41,37:41:1472:37:1322:-95.8018,0,-109.296	0/1:231:105,126:105:3742:126:4509:-336.439,0,-267.443	0/1:153:85,68:85:3031:68:2444:-174.157,0,-226.963	1/1:122:1,121:1:36:121:4323:-385.648,-33.1274,0	0/1:197:92,105:92:3272:105:3768:-280.016,0,-235.396	0/1:248:122,126:122:4348:126:4488:-329.434,0,-316.839	0/1:274:127,146:127:4506:146:5217:-387.127,0,-323.168	1/1:186:0,186:0:0:186:6671:-600.465,-55.9916,0	1/1:348:0,348:0:0:348:12470:-1122.13,-104.758,0	1/1:170:0,170:0:0:170:6087:-547.929,-51.1751,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:194:78,116:78:2796:116:4164:-316.542,0,-193.48	0/1:113:44,69:44:1568:69:2468:-188.357,0,-107.395	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	0/1:261:138,123:138:4855:123:4373:-315.176,0,-358.539	0/1:62:23,39:23:824:39:1400:-107.635,0,-55.8195	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:166:0,166:0:0:166:5890:-530.212,-49.971,0	1/1:194:0,194:0:0:194:6915:-622.419,-58.3998,0	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0	0/1:312:177,135:177:6318:135:4814:-339.493,0,-474.789	1/1:350:2,347:2:72:347:12390:-1108.1,-98.5826,0	1/1:174:0,174:0:0:174:6217:-559.625,-52.3792,0	1/1:204:0,204:0:0:204:7311:-658.038,-61.4101,0	1/1:313:1,312:1:36:312:11158:-1000.51,-90.6241,0	0/1:218:119,99:119:4260:99:3540:-253.185,0,-317.954	1/1:99:4,95:4:144:95:3404:-293.261,-16.4884,0	1/1:133:0,133:0:0:133:4766:-429.097,-40.037,0	1/1:153:0,153:0:0:153:5455:-491.079,-46.0576,0	1/1:41:0,41:0:0:41:1467:-132.326,-12.3422,0	1/1:167:1,166:1:36:166:5923:-529.582,-46.6737,0	0/1:169:90,79:90:3220:79:2824:-203.525,0,-239.148	1/1:401:0,400:0:0:400:14296:-1286.18,-120.412,0	1/1:264:0,264:0:0:264:9449:-850.368,-79.4719,0	1/1:189:2,187:2:72:187:6707:-596.867,-50.0579,0	1/1:220:4,216:4:144:216:7723:-681.786,-52.913,0	0/1:14:10,4:10:337:4:144:-9.0992,0,-26.4403	1/1:213:2,211:2:72:211:7542:-671.982,-57.2827,0	0/1:207:109,98:109:3883:98:3500:-252.898,0,-287.352	1/1:390:1,389:1:36:389:13906:-1247.71,-113.803,0	1/1:164:1,163:1:36:163:5816:-519.956,-45.7706,0	1/1:148:0,148:0:0:148:5280:-475.336,-44.5524,0	0/1:180:91,89:91:3233:89:3179:-232.149,0,-237.006	1/1:305:1,304:1:36:304:10879:-975.41,-88.2159,0	1/1:77:0,77:0:0:77:2707:-243.874,-23.1793,0	0/1:155:70,85:70:2499:85:3056:-228.609,0,-178.503	1/1:176:0,176:0:0:176:6278:-565.115,-52.9813,0	0/1:121:60,61:60:2140:61:2180:-160.042,0,-156.443	0/1:191:97,94:97:3456:94:3345:-243.771,0,-253.757	0/1:153:103,50:103:3692:50:1800:-116.225,0,-286.425	1/1:218:1,217:1:36:217:7776:-696.27,-62.0263,0	1/1:231:0,231:0:0:231:8233:-740.98,-69.5379,0
chr08	1473457	.	T	C	11017.4	PASS	AB=0.432578;ABP=69.1858;AC=37;AF=0.196809;AN=188;AO=740;CIGAR=1X;DP=4749;DPB=4749;DPRA=1.13667;EPP=1609.9;EPPR=8682.39;GTI=3;LEN=1;MEANALT=1.06522;MQM=55.3095;MQMR=59.4494;NS=94;NUMALT=1;ODDS=0.0137905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26311;QR=142882;RO=4005;RPL=0;RPP=1609.9;RPPR=8682.39;RPR=740;RUN=1;SAF=0;SAP=1609.9;SAR=740;SRF=0;SRP=8699.76;SRR=4005;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7239	0/0:71:69,2:69:2438:2:68:0,-14.9414,-213.208	0/1:51:18,33:18:636:33:1180:-89.5387,0,-42.2122	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.283	0/1:7:5,2:5:176:2:72:-4.72867,0,-14.0778	0/1:11:7,4:7:252:4:144:-9.91905,0,-18.7589	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.141	0/0:34:33,0:33:1163:0:0:0,-9.93399,-104.187	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.726	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.302	0/0:55:54,1:54:1928:1:36:0,-12.961,-170.074	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.189	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.791	0/0:65:64,1:64:2292:1:36:0,-15.9691,-202.709	0/0:44:44,0:44:1564:0:0:0,-13.2453,-140.422	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.179	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.148	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.845	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0523	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.911	0/0:102:102,0:102:3643:0:0:0,-30.7051,-327.739	0/1:28:15,13:15:536:13:455:-32.8182,0,-40.1225	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.507	0/1:50:23,27:23:797:27:972:-72.3572,0,-56.9926	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.6967	0/1:191:126,65:126:4519:65:2313:-150.73,0,-349.377	0/1:93:54,39:54:1927:39:1374:-95.7501,0,-145.71	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.7376	0/0:84:84,0:84:2983:0:0:0,-25.2865,-268.581	0/0:54:52,2:52:1856:2:72:0,-9.41974,-160.129	0/1:54:37,17:37:1324:17:603:-37.7919,0,-103.204	0/1:8:6,2:6:216:2:72:-4.42764,0,-17.2505	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.455	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82813	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0124	0/0:165:165,0:165:5907:0:0:0,-49.6699,-531.727	0/1:81:52,29:52:1847:29:1036:-69.0453,0,-141.793	0/1:59:34,25:34:1220:25:891:-62.0413,0,-92.3379	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:56:26,30:26:932:30:1043:-77.1926,0,-67.3366	0/1:24:12,12:12:428:12:419:-30.5837,0,-31.6341	0/1:59:21,38:21:756:38:1350:-103.902,0,-50.5937	0/1:82:51,31:51:1828:31:1116:-76.0548,0,-140.102	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.809	0/1:45:30,15:30:1068:15:540:-35.383,0,-82.8854	0/1:23:14,9:14:504:9:324:-22.1481,0,-37.8185	0/1:74:48,26:48:1724:26:923:-60.927,0,-132.932	0/0:57:57,0:57:2005:0:0:0,-17.1587,-180.718	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.705	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.219	0/1:3:2,1:2:72:1:36:-2.59961,0,-5.93117	0/1:33:10,22:10:356:22:784:-60.3205,0,-22.3896	0/1:35:21,14:21:748:14:500:-34.621,0,-57.1001	0/1:8:1,7:1:36:7:248:-19.8267,0,-1.19003	0/1:39:33,6:33:1180:6:216:-7.96069,0,-94.7551	0/1:45:24,21:24:860:21:752:-53.4013,0,-64.1509	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:4,1:4:135:1:25:-0.519331,0,-10.9774	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.519	0/0:90:87,3:87:3112:3:108:0,-17.0188,-270.219	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/1:72:41,30:41:1456:30:1076:-75.2364,0,-109.601	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.015	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.012	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6033	0/0:200:199,1:199:7085:1:36:0,-56.6082,-633.962	0/1:35:16,19:16:576:19:680:-50.8984,0,-41.6389	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.2344	0/0:43:43,0:43:1521:0:0:0,-12.9443,-137.087	0/0:83:83,0:83:2946:0:0:0,-24.9855,-265.336	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.531	0/1:42:18,24:18:635:24:864:-64.1655,0,-44.3216	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.092	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.181	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/0:36:35,1:35:1260:1:36:0,-7.25831,-110.127	0/1:20:12,8:12:432:8:279:-19.3174,0,-33.1924	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.609	0/1:21:11,10:11:388:10:351:-25.1389,0,-28.916	0/0:71:70,1:70:2511:1:36:0,-17.7753,-222.634	0/0:68:68,0:68:2436:0:0:0,-20.47,-218.345	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.744	0/1:55:28,27:28:1000:27:964:-69.8458,0,-73.7517	0/0:104:103,1:103:3671:1:21:0,-29.2072,-328.474	0/0:27:27,0:27:951:0:0:0,-8.12781,-85.9043	0/1:65:40,25:40:1428:25:900:-61.0297,0,-109.251	0/0:53:52,1:52:1855:1:36:0,-12.3758,-163.618	0/1:50:31,19:31:1108:19:667:-45.0884,0,-84.9795	0/1:87:49,37:49:1748:37:1307:-91.3862,0,-131.345	0/1:65:28,37:28:996:37:1314:-98.9488,0,-70.3856	0/0:39:39,0:39:1400:0:0:0,-11.7402,-124.49	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.014
chr08	1520144	.	A	G	81936.5	PASS	AB=0.49721;ABP=3.13148;AC=152;AF=0.817204;AN=186;AO=3794;CIGAR=1X;DP=4706;DPB=4706;DPRA=0;EPP=8241.58;EPPR=1968.19;GTI=0;LEN=1;MEANALT=1.07527;MQM=59.9939;MQMR=60;NS=93;NUMALT=1;ODDS=2.8792;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135608;QR=32450;RO=905;RPL=0;RPP=8241.58;RPPR=1968.19;RPR=3794;RUN=1;SAF=3794;SAP=8241.58;SAR=0;SRF=905;SRP=1968.19;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:29:0,29:0:0:29:1017:-91.8398,-8.72987,0	0/1:70:33,37:33:1184:37:1309:-97.0374,0,-85.7962	1/1:143:2,140:2:72:140:5024:-445.468,-36.2694,0	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	1/1:76:0,76:0:0:76:2713:-244.412,-22.8783,0	1/1:58:0,58:0:0:58:2062:-185.848,-17.4597,0	1/1:49:0,48:0:0:48:1720:-154.726,-14.4494,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:70:0,70:0:0:70:2500:-225.253,-21.0721,0	1/1:57:0,57:0:0:57:2030:-182.972,-17.1587,0	1/1:44:0,44:0:0:44:1570:-141.59,-13.2453,0	1/1:45:0,45:0:0:45:1605:-144.739,-13.5464,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:71:0,71:0:0:71:2544:-229.21,-21.3731,0	0/1:82:41,41:41:1472:41:1448:-105.928,0,-108.092	1/1:48:0,48:0:0:48:1728:-155.804,-14.4494,0	0/1:32:16,16:16:572:16:576:-42.542,0,-42.1805	1/1:33:0,32:0:0:32:1148:-103.27,-9.63296,0	0/1:103:51,52:51:1832:52:1841:-134.962,0,-134.155	0/1:128:63,65:63:2256:65:2305:-169.178,0,-164.771	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:149:0,149:0:0:149:5325:-479.384,-44.8535,0	1/1:81:1,80:1:36:80:2872:-255.118,-20.7852,0	0/1:84:42,42:42:1512:42:1497:-109.736,0,-111.088	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:111:0,111:0:0:111:3964:-356.951,-33.4143,0	0/1:54:34,20:34:1220:20:692:-46.343,0,-93.8512	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	.:.:.:.:.:.:.:.	0/1:68:35,33:35:1260:33:1179:-85.9472,0,-93.2354	0/1:26:12,14:12:432:14:500:-37.5094,0,-31.3944	0/1:46:18,28:18:648:28:1008:-77.189,0,-44.8045	0/1:18:9,9:9:324:9:316:-23.3603,0,-24.0873	1/1:35:0,35:0:0:35:1233:-111.272,-10.5361,0	0/1:92:48,44:48:1724:44:1584:-115.157,0,-127.751	0/1:55:24,31:24:845:31:1104:-83.114,0,-59.8104	0/1:101:52,49:52:1864:49:1752:-127.56,0,-137.635	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:68:0,68:0:0:68:2428:-218.776,-20.47,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:65:40,25:40:1440:25:888:-60.6721,0,-110.331	0/1:39:21,18:21:756:18:644:-46.5504,0,-56.6271	0/1:10:2,8:2:68:8:272:-21.7977,0,-3.44741	0/1:72:32,40:32:1148:40:1440:-108.224,0,-81.9557	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:86:1,85:1:36:85:3056:-271.67,-22.2903,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:167:93,74:93:3332:74:2656:-189.014,0,-249.825	1/1:62:0,62:0:0:62:2209:-199.073,-18.6639,0	1/1:28:0,28:0:0:28:985:-88.9615,-8.42884,0	1/1:49:0,49:0:0:49:1741:-156.972,-14.7505,0	1/1:52:0,52:0:0:52:1838:-165.697,-15.6536,0	0/1:72:55,17:55:1964:17:597:-32.382,0,-155.361	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:96:0,96:0:0:96:3440:-309.813,-28.8989,0	0/1:30:9,21:9:324:21:742:-58.0712,0,-20.475	1/1:65:0,64:0:0:64:2292:-206.182,-19.2659,0	1/1:75:0,75:0:0:75:2672:-240.724,-22.5773,0	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	1/1:61:1,60:1:36:60:2152:-190.349,-14.7646,0	0/1:9:3,5:3:108:5:180:-13.784,0,-7.3071	1/1:57:1,56:1:36:56:1996:-176.315,-13.5604,0	0/1:53:19,33:19:680:33:1173:-89.8623,0,-45.5159	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	0/1:27:10,17:10:360:17:608:-46.9242,0,-24.6165	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:26:0,26:0:0:26:923:-83.3868,-7.82678,0	0/1:45:19,26:19:680:26:932:-70.6525,0,-47.9828	1/1:49:0,49:0:0:49:1751:-157.873,-14.7505,0	0/1:37:17,20:17:612:20:711:-53.1775,0,-44.2753	0/1:75:34,41:34:1205:41:1472:-110.199,0,-86.1766	0/1:29:17,12:17:612:12:432:-30.4913,0,-46.6836	1/1:59:0,58:0:0:58:2076:-186.79,-17.4597,0	1/1:55:0,55:0:0:55:1971:-177.664,-16.5567,0
chr08	1527199	.	C	A	131320	PASS	AB=0.514563;ABP=6.42563;AC=156;AF=0.829787;AN=188;AO=4714;CIGAR=1X;DP=5639;DPB=5639;DPRA=0;EPP=5.14031;EPPR=22.2542;GTI=1;LEN=1;MEANALT=1.09574;MQM=59.9811;MQMR=59.9989;NS=94;NUMALT=1;ODDS=5.98013;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168833;QR=32755;RO=914;RPL=2323;RPP=5.14031;RPPR=22.2542;RPR=2391;RUN=1;SAF=0;SAP=10239.3;SAR=4714;SRF=0;SRP=1987.74;SRR=914;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:449:-40.7375,-3.91339,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:79:36,43:36:1281:43:1544:-115.472,0,-91.8099	1/1:89:0,89:0:0:89:3168:-285.343,-26.7917,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:24:7,17:7:252:17:612:-48.1805,0,-15.8042	1/1:72:0,72:0:0:72:2561:-230.738,-21.6742,0	1/1:52:1,51:1:36:51:1828:-161.203,-12.0553,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:59:0,59:0:0:59:2107:-189.898,-17.7608,0	1/1:98:0,97:0:0:97:3488:-313.77,-29.1999,0	1/1:73:0,73:0:0:73:2618:-235.867,-21.9752,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:78:0,78:0:0:78:2789:-251.249,-23.4803,0	1/1:43:0,42:0:0:42:1512:-136.015,-12.6433,0	1/1:59:0,59:0:0:59:2109:-190.077,-17.7608,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:118:0,118:0:0:118:4211:-379.171,-35.5215,0	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	1/1:44:0,44:0:0:44:1567:-141.321,-13.2453,0	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	1/1:29:0,29:0:0:29:1028:-92.8311,-8.72987,0	0/1:102:44,58:44:1580:58:2069:-155.774,0,-111.786	0/1:81:53,28:53:1900:28:1008:-66.6529,0,-146.894	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	1/1:81:0,81:0:0:81:2869:-258.445,-24.3834,0	0/1:57:31,26:31:1116:26:928:-66.6795,0,-83.593	1/1:128:1,127:1:36:127:4544:-405.529,-34.9336,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:75:1,74:1:36:74:2660:-236.047,-18.979,0	1/1:99:0,99:0:0:99:3556:-320.247,-29.802,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:208:0,207:0:0:207:7412:-666.763,-62.3132,0	0/1:51:22,29:22:792:29:1044:-78.9223,0,-56.2531	0/1:64:34,30:34:1205:30:1080:-78.2473,0,-89.488	1/1:32:0,32:0:0:32:1140:-102.905,-9.63296,0	0/1:68:35,33:35:1260:33:1184:-86.3983,0,-93.2354	0/1:47:19,28:19:684:28:1008:-76.8879,0,-47.7419	0/1:51:20,31:20:712:31:1108:-84.6785,0,-49.0541	0/1:68:38,30:38:1364:30:1080:-77.0432,0,-102.591	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:32:14,18:14:500:18:648:-49.0189,0,-35.7032	0/1:40:22,18:22:792:18:648:-46.6107,0,-59.5645	0/1:58:28,30:28:1008:30:1080:-80.0535,0,-73.5766	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	1/1:52:0,52:0:0:52:1860:-167.679,-15.6536,0	1/1:84:3,81:3:108:81:2900:-251.161,-15.2114,0	0/1:38:10,28:10:360:28:1000:-78.8762,0,-21.3052	0/1:39:14,25:14:489:25:892:-68.8595,0,-32.5987	0/1:32:3,29:3:108:29:1044:-84.6418,0,-0.44221	0/1:54:24,30:24:860:30:1076:-80.8972,0,-61.4662	0/1:22:6,16:6:216:16:576:-45.5523,0,-13.1679	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:58:2,56:2:72:56:2008:-174.157,-10.623,0	1/1:47:0,47:0:0:47:1688:-152.151,-14.1484,0	1/1:86:1,85:1:36:85:3060:-272.03,-22.2903,0	1/1:30:0,30:0:0:30:1065:-96.1604,-9.0309,0	0/1:214:122,92:122:4358:92:3289:-231.808,0,-327.971	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:80:1,79:1:36:79:2835:-251.789,-20.4841,0	0/1:40:32,8:32:1152:8:288:-14.2262,0,-91.9489	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:24:0,24:0:0:24:852:-76.9991,-7.22472,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:119:0,119:0:0:119:4265:-384.027,-35.8226,0	1/1:60:0,60:0:0:60:2133:-192.236,-18.0618,0	0/1:78:38,38:38:1360:38:1360:-99.4626,0,-99.4626	1/1:73:0,72:0:0:72:2592:-233.168,-21.6742,0	1/1:87:0,86:0:0:86:3092:-278.147,-25.8886,0	1/1:48:0,48:0:0:48:1697:-153.014,-14.4494,0	1/1:95:0,95:0:0:95:3400:-306.215,-28.5979,0	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	1/1:58:1,57:1:36:57:2040:-180.274,-13.8615,0	1/1:47:0,46:0:0:46:1652:-148.609,-13.8474,0	1/1:39:0,39:0:0:39:1385:-124.946,-11.7402,0	0/1:55:27,28:27:972:28:1008:-74.4797,0,-71.2413	1/1:117:5,112:5:171:112:4009:-345.142,-19.4951,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:88:39,48:39:1395:48:1728:-129.256,0,-99.299	1/1:62:1,61:1:36:61:2179:-192.777,-15.0656,0	0/1:53:26,27:26:932:27:972:-71.8433,0,-68.2443	0/1:159:59,100:59:2120:100:3576:-274.181,0,-143.204	0/1:70:46,24:46:1656:24:864:-57.0105,0,-128.256	1/1:105:0,105:0:0:105:3776:-340.033,-31.6082,0	1/1:82:0,80:0:0:80:2867:-257.907,-24.0824,0
chr08	1540707	.	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chr08	1569999	.	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chr08	1570050	.	T	A	41286.4	PASS	AB=0.558072;ABP=103.892;AC=36;AF=0.191489;AN=188;AO=1937;CIGAR=1X;DP=9327;DPB=9327;DPRA=1.02976;EPP=4191.8;EPPR=15963.4;GTI=0;LEN=1;MEANALT=1.15909;MQM=59.6562;MQMR=59.8992;NS=94;NUMALT=1;ODDS=0.0663987;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67552;QR=259061;RO=7374;RPL=460;RPP=1162.5;RPPR=5352.08;RPR=1477;RUN=1;SAF=458;SAP=1171.64;SAR=1479;SRF=1550;SRP=5382.24;SRR=5824;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1068:0:0:0,-9.33193,-96.4245	0/0:141:140,1:140:4958:1:36:0,-38.847,-442.738	0/1:145:64,81:64:2237:81:2838:-211.963,0,-157.942	0/0:205:205,0:205:7133:0:0:0,-61.7111,-641.962	0/1:64:23,41:23:792:41:1427:-109.456,0,-52.3282	0/1:21:13,8:13:447:8:261:-17.4862,0,-34.2361	0/0:116:116,0:116:4035:0:0:0,-34.9195,-363.338	0/0:135:135,0:135:4789:0:0:0,-40.639,-431.169	0/0:110:110,0:110:3886:0:0:0,-33.1133,-349.806	0/0:113:113,0:113:3966:0:0:0,-34.0164,-357.13	0/0:78:78,0:78:2707:0:0:0,-23.4803,-243.787	0/0:90:89,1:89:3126:1:27:0,-24.4013,-278.606	0/0:105:105,0:105:3689:0:0:0,-31.6081,-332.214	0/0:112:111,0:111:3845:0:0:0,-33.4143,-345.881	0/0:116:116,0:116:4059:0:0:0,-34.9195,-365.501	0/0:75:75,0:75:2606:0:0:0,-22.5772,-234.784	0/0:93:93,0:93:3277:0:0:0,-27.9958,-295.149	0/0:83:83,0:83:2906:0:0:0,-24.9855,-261.776	0/0:71:71,0:71:2510:0:0:0,-21.3731,-226.152	0/0:204:204,0:204:7091:0:0:0,-61.4101,-637.772	0/0:193:192,0:192:6741:0:0:0,-57.7978,-606.399	0/1:77:21,55:21:756:55:1930:-150.702,0,-45.1291	0/0:99:98,1:98:3418:1:36:0,-26.2037,-304.213	0/1:95:43,52:43:1527:52:1828:-136.192,0,-109.123	0/0:95:94,1:94:3277:1:36:0,-24.9996,-291.52	0/1:250:109,141:109:3858:141:5003:-375.152,0,-272.158	0/1:226:111,112:111:3900:112:3935:-286.865,0,-283.714	0/0:42:42,0:42:1458:0:0:0,-12.6433,-131.513	0/0:164:161,2:161:5686:2:72:0,-42.4844,-505.082	0/0:110:103,7:103:3660:7:252:0,-10.0843,-306.575	0/1:117:63,54:63:2219:54:1877:-133.945,0,-164.752	0/1:12:4,8:4:144:8:271:-21.1071,0,-9.70126	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:5:3,2:3:108:2:63:-4.478,0,-8.57002	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:245:245,0:245:8715:0:0:0,-73.7523,-784.346	0/1:124:53,70:53:1883:70:2479:-186.114,0,-132.509	0/1:65:30,35:30:1032:35:1231:-91.5091,0,-73.6185	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:136:63,73:63:2230:73:2523:-186.38,0,-160.023	0/1:50:21,29:21:721:29:977:-73.1133,0,-50.1553	0/1:164:73,91:73:2543:91:3216:-239.968,0,-179.693	0/1:105:50,55:50:1761:55:1904:-139.988,0,-127.163	0/0:71:71,0:71:2522:0:0:0,-21.3731,-227.073	0/1:81:30,51:30:1049:51:1804:-138.255,0,-70.3347	0/1:104:54,50:54:1889:50:1706:-122.506,0,-137.67	0/1:167:84,81:84:2911:81:2825:-204.405,0,-212.234	0/0:109:109,0:109:3873:0:0:0,-32.8123,-348.763	0/0:136:136,0:136:4818:0:0:0,-40.9401,-433.777	0/0:125:125,0:125:4398:0:0:0,-37.6287,-395.911	0/1:8:2,6:2:72:6:198:-15.6987,0,-4.42848	0/1:112:50,62:50:1729:62:2180:-162.749,0,-122.175	0/1:47:23,24:23:820:24:837:-61.2701,0,-59.9741	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:130:46,84:46:1647:84:2905:-222.541,0,-109.384	0/1:50:16,34:16:572:34:1198:-93.0618,0,-36.7619	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/0:60:60,0:60:2099:0:0:0,-18.0618,-189.105	0/0:126:125,1:125:4385:1:36:0,-34.3341,-391.195	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:176:83,92:83:2943:92:3242:-238.955,0,-212.065	0/0:182:181,0:181:6394:0:0:0,-54.4864,-575.285	0/0:85:85,0:85:3024:0:0:0,-25.5875,-272.392	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.05	0/0:165:164,1:164:5825:1:21:0,-47.7145,-522.41	0/1:138:38,98:38:1344:98:3375:-262.666,0,-80.0543	0/0:47:47,0:47:1613:0:0:0,-14.1484,-145.45	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/0:90:89,0:89:3146:0:0:0,-26.7917,-283.007	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:62:62,0:62:2179:0:0:0,-18.6639,-196.375	0/1:83:44,39:44:1555:39:1387:-100.143,0,-115.254	0/0:166:166,0:166:5836:0:0:0,-49.971,-525.352	0/0:167:167,0:167:5848:0:0:0,-50.272,-526.441	0/0:83:83,0:83:2944:0:0:0,-24.9855,-265.193	0/0:130:130,0:130:4585:0:0:0,-39.1339,-412.815	0/1:13:4,9:4:140:9:312:-24.4934,0,-9.03119	0/0:104:104,0:104:3680:0:0:0,-31.3071,-331.404	0/1:129:55,74:55:1953:74:2545:-190.437,0,-137.211	0/0:159:159,0:159:5534:0:0:0,-47.8638,-498.19	0/0:116:116,0:116:4086:0:0:0,-34.9195,-367.872	0/0:85:85,0:85:2898:0:0:0,-25.5875,-261.057	0/1:164:74,90:74:2612:90:3165:-235.701,0,-185.788	0/0:205:205,0:205:7153:0:0:0,-61.7111,-643.81	0/0:47:47,0:47:1662:0:0:0,-14.1484,-149.866	0/1:98:41,57:41:1406:57:1997:-150.448,0,-97.3303	0/0:97:96,0:96:3343:0:0:0,-28.8989,-300.699	0/1:69:33,36:33:1135:36:1205:-87.9737,0,-81.1883	0/1:126:53,73:53:1828:73:2490:-186.412,0,-126.866	0/1:77:27,50:27:947:50:1722:-131.89,0,-62.3645	0/0:125:125,0:125:4405:0:0:0,-37.6287,-396.628	0/0:146:146,0:146:5095:0:0:0,-43.9504,-458.213
chr08	1634743	.	T	A	142767	PASS	AB=0.495254;ABP=3.5874;AC=151;AF=0.803191;AN=188;AO=6519;CIGAR=1X;DP=8035;DPB=8035;DPRA=0;EPP=14158.8;EPPR=3294.96;GTI=1;LEN=1;MEANALT=1;MQM=59.9604;MQMR=59.9406;NS=94;NUMALT=1;ODDS=2.36384;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233304;QR=54310;RO=1516;RPL=6490;RPP=13908.1;RPPR=3277.61;RPR=29;RUN=1;SAF=29;SAP=13908.1;SAR=6490;SRF=2;SRP=3277.61;SRR=1514;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	0/1:185:93,92:93:3340:92:3292:-240.806,0,-244.807	1/1:251:0,251:0:0:251:8976:-807.664,-75.5585,0	0/1:75:41,34:41:1464:34:1216:-87.1693,0,-109.479	0/1:24:13,11:13:468:11:396:-28.7557,0,-35.2349	1/1:78:0,78:0:0:78:2792:-251.503,-23.4803,0	1/1:146:0,146:0:0:146:5228:-470.572,-43.9504,0	1/1:90:0,90:0:0:90:3228:-290.733,-27.0927,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:53:0,53:0:0:53:1904:-171.609,-15.9546,0	1/1:123:4,119:4:144:119:4263:-370.532,-23.7131,0	1/1:90:4,86:4:144:86:3083:-264.383,-13.7791,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:90:1,89:1:36:89:3196:-284.264,-23.4944,0	1/1:77:2,75:2:72:75:2692:-235.687,-16.3426,0	1/1:49:1,48:1:36:48:1724:-151.847,-11.1522,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:25:0,25:0:0:25:900:-81.3206,-7.52575,0	1/1:192:0,192:0:0:192:6864:-617.83,-57.7978,0	1/1:185:0,185:0:0:185:6620:-595.88,-55.6906,0	0/1:53:37,16:37:1332:16:568:-35.4973,0,-104.228	1/1:129:0,129:0:0:129:4608:-414.779,-38.8329,0	0/1:69:43,26:43:1536:26:932:-63.4278,0,-117.762	1/1:93:0,93:0:0:93:3332:-300.093,-27.9958,0	0/1:194:84,110:84:3020:110:3952:-297.47,0,-213.63	0/1:156:84,72:84:3005:72:2576:-185.129,0,-223.719	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:128:0,128:0:0:128:4592:-413.444,-38.5318,0	1/1:95:0,95:0:0:95:3400:-306.215,-28.5979,0	0/1:127:62,65:62:2205:65:2324:-171.189,0,-160.483	0/1:17:13,4:13:460:4:144:-8.19611,0,-36.6179	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4083	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:152:0,152:0:0:152:5414:-487.232,-45.7566,0	0/1:63:22,41:22:777:41:1460:-112.731,0,-51.2855	0/1:57:33,24:33:1188:24:856:-60.2024,0,-89.8796	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:157:72,85:72:2588:85:3033:-225.937,0,-185.907	0/1:31:21,10:21:756:10:360:-23.4124,0,-59.0353	0/1:197:112,85:112:4012:85:3036:-214.166,0,-301.966	0/1:55:26,29:26:936:29:1040:-77.3577,0,-68.0028	1/1:59:0,59:0:0:59:2116:-189.17,-17.7608,0	0/1:86:41,45:41:1468:45:1600:-118.402,0,-106.528	0/1:120:52,68:52:1860:68:2436:-183.326,0,-131.556	0/1:163:80,83:80:2876:83:2964:-217.926,0,-210.008	1/1:80:0,80:0:0:80:2860:-257.638,-24.0824,0	1/1:142:0,142:0:0:142:5065:-455.995,-42.7463,0	1/1:83:1,82:1:36:82:2932:-260.516,-21.3872,0	0/1:19:12,7:12:424:7:248:-16.9446,0,-32.7759	0/1:101:52,49:52:1872:49:1756:-127.92,0,-138.355	0/1:51:26,25:26:936:25:900:-65.9685,0,-69.2069	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:134:53,81:53:1870:81:2912:-221.967,0,-128.237	0/1:36:16,20:16:572:20:720:-54.2917,0,-40.9763	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.1589	1/1:93:0,93:0:0:93:3314:-298.476,-27.9958,0	1/1:91:1,90:1:36:90:3232:-287.503,-23.7955,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:96:40,56:40:1432:56:1989:-150.383,0,-100.279	1/1:148:1,147:1:36:147:5253:-469.307,-40.9542,0	1/1:24:1,23:1:36:23:828:-71.2458,-3.62645,0	1/1:15:0,15:0:0:15:528:-47.85,-4.51545,0	1/1:166:0,166:0:0:166:5916:-532.553,-49.971,0	0/1:120:93,27:93:3332:27:972:-51.6743,0,-263.974	1/1:58:2,56:2:72:56:2016:-174.876,-10.623,0	1/1:67:0,67:0:0:67:2376:-214.099,-20.169,0	1/1:43:1,42:1:32:42:1508:-132.802,-9.74498,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:59:0,59:0:0:59:2100:-189.27,-17.7608,0	0/1:76:31,45:31:1116:45:1612:-122.492,0,-77.8734	1/1:193:0,193:0:0:193:6896:-620.709,-58.0988,0	1/1:139:2,137:2:72:137:4892:-433.597,-35.0064,0	1/1:92:0,92:0:0:92:3296:-296.859,-27.6948,0	1/1:78:0,78:0:0:78:2788:-251.161,-23.4803,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:149:0,149:0:0:149:5360:-482.521,-44.8535,0	0/1:126:53,73:53:1900:73:2616:-197.758,0,-133.348	1/1:262:0,262:0:0:262:9384:-844.52,-78.8699,0	1/1:62:1,61:1:36:61:2184:-193.228,-15.0656,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:45:25,20:25:900:20:716:-51.2214,0,-67.7747	1/1:148:1,147:1:36:147:5268:-470.657,-40.9542,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:52:23,29:23:824:29:1044:-78.6212,0,-58.8298	1/1:68:2,66:2:72:66:2346:-204.562,-13.6333,0	0/1:56:34,22:34:1224:22:792:-54.748,0,-93.6094	0/1:92:36,56:36:1292:56:2000:-152.579,0,-88.889	0/1:66:42,24:42:1493:24:856:-57.4931,0,-114.795	1/1:117:0,117:0:0:117:4192:-377.461,-35.2205,0	1/1:112:2,110:2:72:110:3940:-347.955,-26.8786,0
chr08	1678263	.	A	G,T	140738	PASS	AB=0.493986,0.504725;ABP=3.74159,3.46176;AC=151,37;AF=0.803191,0.196809;AN=188;AO=5360,1184;CIGAR=1X,1X;DP=6555;DPB=6555;DPRA=35.2312,0.977152;EPP=11642.1,2574.03;EPPR=22.5536;GTI=1;LEN=1,1;MEANALT=1.47312,2.02326;MQM=59.8815,59.94;MQMR=59.5556;NS=94;NUMALT=2;ODDS=0.701305;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=188709,41972;QR=320;RO=9;RPL=0,0;RPP=11642.1,2574.03;RPPR=22.5536;RPR=5360,1184;RUN=1,1;SAF=0,0;SAP=11642.1,2574.03;SAR=5360,1184;SRF=0;SRP=22.5536;SRR=9;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:85:0,84,1:0:0:84,1:2941,36:-264.525,-25.2865,0,-261.588,-21.9893,-261.287	1/1:53:0,53,0:0:0:53,0:1878,0:-169.297,-15.9546,0,-169.297,-15.9546,-169.297	1/2:97:0,60,37:0:0:60,37:2139,1328:-283.042,-108.684,-90.6223,-174.716,0,-163.577	1/1:147:0,145,1:0:0:145,1:5107,36:-459.412,-43.6494,0,-456.474,-40.7119,-456.173	1/2:32:0,20,12:0:0:20,12:703,419:-91.6533,-34.4303,-28.4097,-57.5729,0,-53.9606	1/2:33:0,13,20:0:0:13,20:459,719:-96.3933,-59.018,-55.1046,-37.7307,0,-31.7101	1/1:42:0,42,0:0:0:42,0:1456,0:-131.329,-12.6433,0,-131.329,-12.6433,-131.329	1/1:103:0,103,0:0:0:103,0:3620,0:-325.991,-31.0061,0,-325.991,-31.0061,-325.991	1/1:85:0,85,0:0:0:85,0:2991,0:-269.383,-25.5876,0,-269.383,-25.5876,-269.383	1/1:48:0,48,0:0:0:48,0:1683,0:-151.708,-14.4494,0,-151.708,-14.4494,-151.708	1/1:102:0,102,0:0:0:102,0:3562,0:-320.787,-30.7051,0,-320.787,-30.7051,-320.787	1/1:103:0,103,0:0:0:103,0:3597,0:-323.938,-31.0061,0,-323.938,-31.0061,-323.938	1/1:78:0,78,0:0:0:78,0:2735,0:-246.393,-23.4803,0,-246.393,-23.4803,-246.393	1/1:67:0,67,0:0:0:67,0:2379,0:-214.366,-20.169,0,-214.366,-20.169,-214.366	1/1:61:0,61,0:0:0:61,0:2153,0:-194.036,-18.3628,0,-194.036,-18.3628,-194.036	1/1:66:0,66,0:0:0:66,0:2294,0:-206.712,-19.868,0,-206.712,-19.868,-206.712	1/1:43:0,43,0:0:0:43,0:1530,0:-137.992,-12.9443,0,-137.992,-12.9443,-137.992	1/1:33:0,33,0:0:0:33,0:1171,0:-105.697,-9.93399,0,-105.697,-9.93399,-105.697	1/1:50:0,50,0:0:0:50,0:1756,0:-158.267,-15.0515,0,-158.267,-15.0515,-158.267	1/1:70:0,70,0:0:0:70,0:2453,0:-221.024,-21.0721,0,-221.024,-21.0721,-221.024	1/1:95:0,94,1:0:0:94,1:3291,21:-296.191,-28.2968,0,-294.603,-26.4979,-294.302	1/2:32:0,14,18:0:0:14,18:491,644:-92.8251,-52.8721,-48.6576,-40.3067,0,-34.8882	1/1:84:0,83,1:0:0:83,1:2889,36:-259.866,-24.9855,0,-256.928,-21.6882,-256.627	1/2:57:0,13,44:0:0:13,44:456,1543:-163.023,-125.914,-122,-37.4598,0,-24.2145	1/1:62:0,61,1:0:0:61,1:2184,36:-196.466,-18.3628,0,-193.529,-15.0656,-193.228	1/2:173:1,69,103:1:36:69,103:2468,3663:-496.511,-295.566,-277.732,-198.306,0,-170.237	1/2:139:1,69,69:1:36:69,69:2441,2445:-394.658,-196.227,-178.393,-195.789,0,-177.955	1/1:35:0,35,0:0:0:35,0:1215,0:-109.65,-10.5361,0,-109.65,-10.5361,-109.65	1/1:153:0,153,0:0:0:153,0:5480,0:-493.327,-46.0576,0,-493.327,-46.0576,-493.327	1/1:120:0,120,0:0:0:120,0:4221,0:-379.483,-36.1236,0,-379.483,-36.1236,-379.483	1/2:66:0,38,28:0:0:38,28:1338,991:-189.954,-81.0747,-69.6355,-109.232,0,-100.804	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:9:0,9,0:0:0:9,0:316,0:-28.7789,-2.70927,0,-28.7789,-2.70927,-28.7789	1/1:18:0,18,0:0:0:18,0:631,0:-57.1157,-5.41854,0,-57.1157,-5.41854,-57.1157	1/1:192:0,192,0:0:0:192,0:6770,0:-609.375,-57.7978,0,-609.375,-57.7978,-609.375	1/2:90:0,35,55:0:0:35,55:1233,1932:-257.98,-157.596,-147.06,-100.736,0,-84.1794	1/2:77:0,34,42:0:0:34,42:1190,1480:-217.307,-120.49,-110.255,-96.8089,0,-84.1657	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:80:0,51,29:0:0:51,29:1793,1022:-229.507,-83.5616,-68.209,-146.298,0,-137.568	1/2:30:0,19,11:0:0:19,11:666,396:-86.8591,-32.6714,-26.9518,-54.544,0,-51.2327	1/2:96:0,53,43:0:0:53,43:1868,1505:-274.887,-122.796,-106.841,-152.442,0,-139.498	1/2:76:0,40,36:0:0:40,36:1424,1273:-220.095,-104.034,-91.9923,-116.416,0,-105.579	1/1:48:0,48,0:0:0:48,0:1677,0:-151.187,-14.4494,0,-151.187,-14.4494,-151.187	1/2:78:0,44,34:0:0:44,34:1560,1208:-225.876,-98.7911,-85.5457,-127.44,0,-117.205	1/2:70:0,38,32:0:0:38,32:1324,1140:-200.941,-93.2762,-81.8371,-108.018,0,-98.3847	1/2:105:0,57,48:0:0:57,48:2000,1695:-301.143,-138.382,-121.223,-163.113,0,-148.663	1/1:70:0,70,0:0:0:70,0:2488,0:-224.171,-21.0721,0,-224.171,-21.0721,-224.171	1/1:75:0,75,0:0:0:75,0:2638,0:-237.666,-22.5773,0,-237.666,-22.5773,-237.666	1/1:42:0,42,0:0:0:42,0:1491,0:-134.483,-12.6433,0,-134.483,-12.6433,-134.483	1/2:13:0,9,4:0:0:9,4:306,140:-36.5515,-11.7405,-9.03119,-25.1579,0,-23.9537	1/2:97:0,53,44:0:0:53,44:1861,1560:-278.906,-127.446,-111.492,-151.813,0,-138.568	1/2:76:0,47,29:0:0:47,29:1661,1044:-220.815,-85.5449,-71.3965,-135.627,0,-126.897	1/2:4:0,2,2:0:0:2,2:68,72:-11.7405,-6.23466,-5.6326,-5.85565,0,-5.25359	1/2:77:0,40,37:0:0:40,37:1404,1294:-219.778,-105.515,-93.4741,-114.613,0,-103.475	1/2:48:0,20,28:0:0:20,28:712,980:-138.116,-80.0832,-74.0626,-58.3861,0,-49.9572	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chr08	1725895	.	A	T	77401.1	PASS	AB=0.538015;ABP=24.6381;AC=153;AF=0.81383;AN=188;AO=3831;CIGAR=1X;DP=4634;DPB=4634;DPRA=0;EPP=8321.92;EPPR=1744.53;GTI=0;LEN=1;MEANALT=1.01064;MQM=40.2665;MQMR=49.9838;NS=94;NUMALT=1;ODDS=5.57987;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136984;QR=28686;RO=802;RPL=0;RPP=8321.92;RPPR=1744.53;RPR=3831;RUN=1;SAF=0;SAP=8321.92;SAR=3831;SRF=0;SRP=1744.53;SRR=802;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:1008:-83.4059,-8.42884,0	1/1:43:0,43:0:0:43:1524:-129.529,-12.9443,0	0/1:113:53,60:53:1876:60:2115:-146.035,0,-131.594	1/1:112:0,112:0:0:112:4001:-346.888,-33.7154,0	0/1:11:4,7:4:129:7:252:-18.3098,0,-8.52807	0/1:14:8,6:8:288:6:216:-14.6879,0,-21.7476	1/1:76:0,76:0:0:76:2705:-237.53,-22.8783,0	1/1:63:0,63:0:0:63:2264:-191.862,-18.9649,0	1/1:35:0,35:0:0:35:1252:-106.8,-10.5361,0	1/1:26:0,26:0:0:26:936:-80.2734,-7.82678,0	1/1:45:0,45:0:0:45:1616:-141.285,-13.5464,0	1/1:65:0,65:0:0:65:2322:-195.576,-19.567,0	1/1:41:0,41:0:0:41:1472:-125.341,-12.3422,0	1/1:74:0,74:0:0:74:2656:-230,-22.2762,0	1/1:49:0,49:0:0:49:1764:-152.732,-14.7505,0	1/1:53:0,53:0:0:53:1900:-165.116,-15.9546,0	1/1:27:0,27:0:0:27:968:-82.434,-8.12781,0	1/1:25:0,25:0:0:25:892:-73.5384,-7.52575,0	1/1:42:0,42:0:0:42:1508:-126.481,-12.6433,0	1/1:60:0,60:0:0:60:2145:-186.04,-18.0618,0	1/1:65:0,65:0:0:65:2332:-202.059,-19.567,0	0/1:23:10,13:10:360:13:449:-32.2592,0,-25.7889	1/1:50:0,50:0:0:50:1766:-154.362,-15.0515,0	0/1:32:14,18:14:504:18:648:-47.0507,0,-35.795	1/1:26:0,26:0:0:26:891:-77.4646,-7.82678,0	0/1:51:14,37:14:496:37:1332:-98.3028,0,-29.5001	0/1:174:81,93:81:2899:93:3318:-232.972,0,-204.196	1/1:25:0,25:0:0:25:900:-76.7719,-7.52575,0	1/1:135:0,135:0:0:135:4848:-414.259,-40.6391,0	1/1:57:1,56:1:36:56:2016:-170.963,-14.3376,0	0/1:39:15,24:15:540:24:849:-61.3364,0,-36.9366	0/1:4:3,1:3:108:1:36:-2.27658,0,-8.82889	1/1:23:0,23:0:0:23:828:-71.6987,-6.92369,0	0/1:5:3,2:3:108:2:72:-4.99969,0,-8.50156	1/1:8:0,8:0:0:8:288:-24.9923,-2.40824,0	1/1:10:0,10:0:0:10:360:-31.1548,-3.0103,0	1/1:129:0,129:0:0:129:4636:-396.329,-38.8329,0	0/1:54:31,23:31:1116:23:828:-56.0912,0,-83.5624	0/1:53:27,26:27:972:26:932:-59.7108,0,-71.2818	1/1:2:0,2:0:0:2:72:-5.98669,-0.60206,0	0/1:70:13,57:13:468:57:2040:-151.883,0,-20.8285	0/1:29:16,12:16:576:12:432:-29.202,0,-42.3627	0/1:49:20,29:20:701:29:1036:-74.6453,0,-47.9759	0/1:27:10,17:10:356:17:612:-45.3573,0,-24.1757	1/1:42:1,41:1:36:41:1472:-125.079,-9.66251,0	0/1:29:6,23:6:216:23:813:-60.8774,0,-11.0512	0/1:58:35,23:35:1252:23:808:-51.6222,0,-94.3475	0/1:71:31,40:31:1101:40:1417:-99.8321,0,-77.3771	1/1:23:0,23:0:0:23:828:-71.0607,-6.92369,0	1/1:60:0,60:0:0:60:2148:-186.241,-18.0618,0	1/1:58:0,58:0:0:58:2069:-177.436,-17.4597,0	1/1:5:0,5:0:0:5:180:-16.1596,-1.50515,0	0/1:106:36,70:36:1284:70:2512:-180.86,0,-82.5661	0/1:24:10,14:10:351:14:504:-36.2278,0,-24.6449	0/1:15:6,9:6:216:9:324:-23.5581,0,-14.9263	0/1:91:36,55:36:1296:55:1965:-142.22,0,-88.2412	0/1:11:5,6:5:180:6:208:-15.3881,0,-13.0753	1/1:12:0,12:0:0:12:432:-36.2594,-3.61236,0	0/1:6:3,3:3:104:3:108:-7.89649,0,-7.80584	1/1:67:0,67:0:0:67:2382:-205.276,-20.169,0	1/1:97:0,97:0:0:97:3471:-302.486,-29.1999,0	1/1:5:0,5:0:0:5:180:-16.1596,-1.50515,0	0/1:61:28,33:28:1004:33:1188:-83.5578,0,-72.2309	1/1:98:0,98:0:0:98:3464:-303.641,-29.5009,0	1/1:37:0,37:0:0:37:1332:-115.819,-11.1381,0	1/1:49:0,49:0:0:49:1756:-153.217,-14.7505,0	1/1:36:0,36:0:0:36:1277:-112.33,-10.8371,0	0/1:78:54,24:54:1925:24:860:-51.9587,0,-147.684	1/1:44:3,41:3:108:41:1468:-117.277,-4.81126,0	1/1:48:0,48:0:0:48:1713:-144.225,-14.4494,0	1/1:30:0,30:0:0:30:1076:-93.5996,-9.0309,0	1/1:6:0,6:0:0:6:216:-19.3655,-1.80618,0	1/1:98:0,98:0:0:98:3512:-295.331,-29.5009,0	0/1:61:34,27:34:1224:27:972:-64.5442,0,-89.2168	1/1:70:1,69:1:36:69:2450:-207.444,-17.4775,0	1/1:88:0,88:0:0:88:3160:-275.834,-26.4906,0	1/1:29:0,29:0:0:29:1040:-88.1805,-8.72987,0	1/1:51:0,51:0:0:51:1798:-153.799,-15.3525,0	0/1:20:13,7:13:464:7:252:-15.1819,0,-35.9024	1/1:46:0,46:0:0:46:1641:-141.612,-13.8474,0	0/1:69:33,36:33:1188:36:1296:-89.7543,0,-84.4777	1/1:56:1,55:1:36:55:1976:-168.652,-13.2611,0	1/1:45:0,45:0:0:45:1608:-141.319,-13.5464,0	1/1:61:0,61:0:0:61:2196:-191.189,-18.3628,0	0/1:18:5,13:5:180:13:468:-36.1294,0,-11.0764	1/1:67:0,67:0:0:67:2412:-209.749,-20.169,0	1/1:13:0,13:0:0:13:468:-40.4703,-3.91339,0	0/1:52:27,25:27:964:25:881:-57.3712,0,-70.9194	1/1:68:0,68:0:0:68:2429:-204.251,-20.47,0	0/1:49:23,26:23:824:26:936:-66.2949,0,-59.2182	0/1:121:65,56:65:2336:56:2016:-136.604,0,-170.595	0/1:35:23,12:23:828:12:413:-25.9731,0,-64.0851	1/1:52:0,52:0:0:52:1855:-160.603,-15.6536,0	1/1:56:0,56:0:0:56:1997:-176.014,-16.8577,0
chr08	1725936	.	GGGCT	GTGCT,GTGGCT	88571.3	PASS	AB=0.544458,0.452497;ABP=31.1998,35.1936;AC=153,35;AF=0.81383,0.18617;AN=188;AO=3699,744;CIGAR=1M1X3M,1M1I4M;DP=4460;DPB=4609.2;DPRA=0,0.978278;EPP=8035.29,1618.59;EPPR=5.18177;GTI=0;LEN=1,1;MEANALT=1.53191,2.08333;MQM=40.2595,50.1694;MQMR=45;NS=94;NUMALT=2;ODDS=4.3871;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=127917,25822;QR=27;RO=1;RPL=3699,744;RPP=8035.29,1618.59;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8035.29,1618.59;SAR=3699,744;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,ins	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28,0:0:0:28,0:945,0:-80.764,-8.42884,0,-80.764,-8.42884,-80.764	1/1:42:0,42,0:0:0:42,0:1388,0:-119.525,-12.6433,0,-119.525,-12.6433,-119.525	1/2:103:0,56,47:0:0:56,47:1962,1638:-282.942,-131.861,-115.004,-151.421,0,-137.272	1/1:108:0,108,0:0:0:108,0:3740,0:-327.604,-32.5112,0,-327.604,-32.5112,-327.604	1/2:9:0,6,3:0:0:6,3:209,108:-25.2647,-9.08398,-7.2778,-16.5296,0,-15.6266	1/2:11:0,4,7:0:0:4,7:144,252:-31.9612,-20.8463,-19.6422,-11.4632,0,-9.356	1/1:74:0,74,0:0:0:74,0:2559,0:-225.448,-22.2762,0,-225.448,-22.2762,-225.448	1/1:60:0,60,0:0:0:60,0:2041,0:-175.085,-18.0618,0,-175.085,-18.0618,-175.085	1/1:32:0,32,0:0:0:32,0:1139,0:-97.6739,-9.63296,0,-97.6739,-9.63296,-97.6739	1/1:28:0,28,0:0:0:28,0:973,0:-85.0511,-8.42884,0,-85.0511,-8.42884,-85.0511	1/1:46:0,45,0:0:0:45,0:1566,0:-136.936,-13.5464,0,-136.936,-13.5464,-136.936	1/1:63:0,63,0:0:0:63,0:2204,0:-188.195,-18.9649,0,-188.195,-18.9649,-188.195	1/1:38:0,38,0:0:0:38,0:1347,0:-115.303,-11.4391,0,-115.303,-11.4391,-115.303	1/1:67:0,66,0:0:0:66,0:2309,0:-200.44,-19.868,0,-200.44,-19.868,-200.44	1/1:44:0,44,0:0:0:44,0:1544,0:-135.221,-13.2453,0,-135.221,-13.2453,-135.221	1/1:52:0,52,0:0:0:52,0:1785,0:-155.837,-15.6536,0,-155.837,-15.6536,-155.837	1/1:24:0,24,0:0:0:24,0:837,0:-71.7794,-7.22472,0,-71.7794,-7.22472,-71.7794	1/1:21:0,21,0:0:0:21,0:703,0:-60.0519,-6.32163,0,-60.0519,-6.32163,-60.0519	1/1:38:0,37,0:0:0:37,0:1259,0:-107.664,-11.1381,0,-107.664,-11.1381,-107.664	1/1:59:0,59,0:0:0:59,0:1973,0:-173.062,-17.7608,0,-173.062,-17.7608,-173.062	1/1:66:0,66,0:0:0:66,0:2298,0:-199.616,-19.868,0,-199.616,-19.868,-199.616	1/2:23:0,13,10:0:0:13,10:452,356:-64.645,-29.3563,-25.4429,-35.6354,0,-32.6251	1/1:51:0,51,0:0:0:51,0:1739,0:-152.579,-15.3525,0,-152.579,-15.3525,-152.579	1/2:31:0,18,13:0:0:18,13:610,456:-85.0731,-37.2584,-31.8398,-48.1552,0,-44.2418	1/1:24:0,24,0:0:0:24,0:826,0:-72.3004,-7.22472,0,-72.3004,-7.22472,-72.3004	1/2:50:0,36,13:0:0:36,13:1279,453:-135.548,-36.859,-26.0219,-98.8137,0,-94.9003	1/2:164:1,91,72:1:27:91,72:3079,2486:-437.342,-197.68,-172.408,-237.906,0,-218.354	1/1:22:0,22,0:0:0:22,0:762,0:-66.4763,-6.62266,0,-66.4763,-6.62266,-66.4763	1/1:131:0,131,0:0:0:131,0:4580,0:-395.164,-39.4349,0,-395.164,-39.4349,-395.164	1/1:56:0,56,0:0:0:56,0:1897,0:-165.263,-16.8577,0,-165.263,-16.8577,-165.263	1/2:38:0,23,15:0:0:23,15:796,532:-105.789,-43.4346,-36.5109,-62.6997,0,-58.1842	1/2:4:0,1,3:0:0:1,3:36,93:-10.6012,-7.75989,-7.45886,-3.17967,0,-2.27658	1/1:22:0,22,0:0:0:22,0:770,0:-67.1641,-6.62266,0,-67.1641,-6.62266,-67.1641	1/2:5:0,2,3:0:0:2,3:72,108:-14.658,-9.10362,-8.50156,-5.90278,0,-4.99969	1/1:11:0,11,0:0:0:11,0:386,0:-33.3829,-3.31133,0,-33.3829,-3.31133,-33.3829	1/1:12:0,12,0:0:0:12,0:400,0:-34.6289,-3.61236,0,-34.6289,-3.61236,-34.6289	1/1:127:0,126,0:0:0:126,0:4349,0:-375.412,-37.9298,0,-375.412,-37.9298,-375.412	1/2:50:0,20,28:0:0:20,28:682,979:-132.396,-78.8856,-72.865,-53.5006,0,-45.0717	1/2:49:0,23,26:0:0:23,26:792,904:-133.776,-73.4147,-66.491,-60.6964,0,-52.8696	1/1:1:0,1,0:0:0:1,0:32,0:-3.14853,-0.30103,0,-3.14853,-0.30103,-3.14853	1/2:68:0,54,14:0:0:54,14:1832,490:-181.777,-39.7902,-23.5345,-142.329,0,-138.115	1/2:28:0,12,16:0:0:12,16:428,549:-78.3686,-44.6868,-41.0744,-34.0255,0,-29.209	1/2:46:0,28,18:0:0:28,18:964,629:-126.376,-51.0442,-42.6153,-75.6725,0,-70.254	1/2:25:0,16,9:0:0:16,9:570,316:-70.9579,-26.0143,-21.1978,-45.2922,0,-42.5829	1/1:41:0,41,0:0:0:41,0:1398,0:-123.075,-12.3422,0,-123.075,-12.3422,-123.075	1/2:29:0,23,6:0:0:23,6:808,208:-79.4209,-17.2454,-10.3217,-62.5194,0,-60.7132	1/2:56:0,22,34:0:0:22,34:788,1143:-152.804,-92.0479,-85.4252,-61.0932,0,-50.8582	1/2:68:0,40,28:0:0:40,28:1317,962:-180.788,-77.7996,-65.7584,-103.32,0,-94.8916	1/1:25:0,25,0:0:0:25,0:821,0:-71.7783,-7.52575,0,-71.7783,-7.52575,-71.7783	1/1:57:0,57,0:0:0:57,0:1968,0:-172.909,-17.1587,0,-172.909,-17.1587,-172.909	1/1:57:0,57,0:0:0:57,0:2017,0:-174.028,-17.1587,0,-174.028,-17.1587,-174.028	1/1:5:0,5,0:0:0:5,0:180,0:-16.1596,-1.50515,0,-16.1596,-1.50515,-16.1596	1/2:104:0,69,35:0:0:69,35:2290,1248:-277.065,-101.054,-80.2833,-176.352,0,-165.816	1/2:23:0,13,10:0:0:13,10:468,337:-63.7219,-27.603,-23.6896,-36.4579,0,-33.4476	1/2:15:0,9,6:0:0:9,6:305,207:-40.417,-16.874,-14.1647,-23.8765,0,-22.0703	1/2:88:0,54,34:0:0:54,34:1903,1165:-243.071,-94.3254,-78.0698,-149.086,0,-138.851	1/2:12:0,7,5:0:0:7,5:242,176:-33.5477,-14.5759,-12.4687,-19.3152,0,-17.81	1/1:12:0,12,0:0:0:12,0:417,0:-35.9997,-3.61236,0,-35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chr08	1730894	.	T	A	77991.3	PASS	AB=0.38476;ABP=308.803;AC=146;AF=0.776596;AN=188;AO=3694;CIGAR=1X;DP=5363;DPB=5363;DPRA=5.23167;EPP=8024.43;EPPR=3627.2;GTI=5;LEN=1;MEANALT=1;MQM=59.9905;MQMR=59.6315;NS=94;NUMALT=1;ODDS=0.409408;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132449;QR=59721;RO=1669;RPL=34;RPP=7731.83;RPPR=3558.04;RPR=3660;RUN=1;SAF=3660;SAP=7731.83;SAR=34;SRF=1661;SRP=3558.04;SRR=8;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:4,27:4:144:27:972:-78.466,0,-3.98169	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:96:75,21:75:2696:21:756:-39.4683,0,-213.985	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	0/1:45:30,15:30:1076:15:521:-33.67,0,-83.6065	0/1:45:30,15:30:1080:15:540:-35.3902,0,-83.9669	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:109:4,105:4:144:105:3757:-325.043,-19.5278,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	0/1:40:4,36:4:144:36:1296:-104.903,0,-1.16366	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	1/1:53:3,50:3:108:50:1800:-152.207,-5.87942,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:37:1,36:1:36:36:1296:-113.346,-7.53984,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:22:1,21:1:36:21:756:-65.1796,-3.43504,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	1/1:67:0,67:0:0:67:2389:-215.266,-20.169,0	0/1:81:60,21:60:2148:21:752:-43.6228,0,-169.204	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	0/1:175:114,61:114:4092:61:2188:-144.505,0,-315.728	0/1:141:89,52:89:3192:52:1868:-125.954,0,-245.058	1/1:29:1,28:1:36:28:1008:-87.4381,-5.1316,0	1/1:103:0,103:0:0:103:3700:-333.201,-31.0061,0	1/1:26:1,25:1:36:25:900:-77.7227,-4.22851,0	0/1:50:39,11:39:1396:11:392:-20.5686,0,-110.888	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	1/1:19:1,18:1:36:18:648:-55.0851,-2.15276,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.7539	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	1/1:117:3,114:3:108:114:4089:-358.118,-25.1453,0	0/1:96:78,18:78:2784:18:648:-29.753,0,-221.874	0/1:35:17,18:17:612:18:644:-47.7544,0,-44.6169	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:104:74,30:74:2660:30:1076:-65.8457,0,-208.338	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	0/1:136:91,45:91:3244:45:1616:-104.79,0,-251.242	0/1:36:22,14:22:784:14:504:-34.861,0,-60.0184	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	0/1:106:70,36:70:2504:36:1281:-83.6821,0,-193.703	0/1:136:84,52:84:3020:52:1868:-127.459,0,-231.005	0/1:172:105,67:105:3715:67:2412:-165.559,0,-282.773	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:110:69,41:69:2476:41:1472:-99.6628,0,-189.98	0/1:56:39,17:39:1362:17:608:-38.1943,0,-106.017	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/1:106:64,42:64:2300:42:1504:-103.745,0,-175.112	0/1:31:19,12:19:684:12:420:-28.8021,0,-52.5584	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:41:0,41:0:0:41:1472:-132.773,-12.3422,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.06166	0/1:131:78,53:78:2776:53:1904:-132.203,0,-210.647	1/1:71:0,71:0:0:71:2529:-227.86,-21.3731,0	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:118:81,37:81:2888:37:1317:-83.3083,0,-224.636	1/1:30:2,28:2:72:28:1004:-83.8989,-2.25396,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:44:3,41:3:108:41:1476:-123.2,-3.30926,0	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.56252	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:92:44,48:44:1580:48:1724:-127.751,0,-114.797	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:87:0,87:0:0:87:3109:-280.035,-26.1896,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:40:3,37:3:108:37:1328:-109.969,-2.18779,0	0/1:75:62,13:62:2212:13:468:-19.8824,0,-176.654	1/1:89:1,88:1:36:88:3152:-280.307,-23.1934,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:60:0,60:0:0:60:2145:-193.216,-18.0618,0	0/1:36:22,14:22:792:14:504:-34.861,0,-60.7686	1/1:104:1,103:1:36:103:3674:-327.262,-27.7088,0	1/1:25:1,24:1:36:24:860:-74.1236,-3.92748,0	0/1:57:31,26:31:1116:26:932:-67.0402,0,-83.593	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:31:12,19:12:428:19:684:-52.5584,0,-29.4401	0/1:106:45,61:45:1612:61:2196:-165.996,0,-113.461	0/1:50:25,25:25:896:25:896:-65.9089,0,-65.9089	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:65:1,64:1:36:64:2296:-203.303,-15.9687,0
chr08	1730953	.	A	G	71570.4	PASS	AB=0.283628;ABP=1312;AC=148;AF=0.787234;AN=188;AO=3651;CIGAR=1X;DP=6197;DPB=6197;DPRA=6.04692;EPP=7931.06;EPPR=5529.41;GTI=18;LEN=1;MEANALT=1.01075;MQM=59.9934;MQMR=47.5745;NS=94;NUMALT=1;ODDS=0.904988;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130076;QR=91039;RO=2545;RPL=3651;RPP=7931.06;RPPR=449.019;RPR=0;RUN=1;SAF=3651;SAP=7931.06;SAR=0;SRF=1634;SRP=449.019;SRR=911;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:3,30:3:104:30:1022:-82.5807,-0.231185,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:96:75,21:75:2700:21:740:-38.0245,0,-214.345	1/1:91:0,91:0:0:91:3231:-291.011,-27.3937,0	0/1:45:30,15:30:1076:15:540:-35.3902,0,-83.6065	0/1:44:29,15:29:1036:15:540:-35.6912,0,-80.3086	1/1:35:0,35:0:0:35:1251:-112.895,-10.5361,0	1/1:108:1,107:1:36:107:3782:-337.012,-28.9444,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:39:0,39:0:0:39:1382:-124.678,-11.7402,0	1/1:94:0,94:0:0:94:3340:-300.819,-28.2968,0	1/1:49:1,48:1:36:48:1720:-151.487,-11.1522,0	1/1:48:0,48:0:0:48:1707:-153.915,-14.4494,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:55:0,55:0:0:55:1958:-176.495,-16.5567,0	1/1:22:1,21:1:36:21:756:-65.1796,-3.43504,0	1/1:22:0,22:0:0:22:771:-69.7103,-6.62266,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:95:0,95:0:0:95:3397:-305.943,-28.5979,0	1/1:67:0,66:0:0:66:2337:-210.229,-19.868,0	0/0:227:206,21:206:7358:21:737:0,-1.68318,-469.164	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:23:16,7:16:561:7:248:-15.7405,0,-43.8934	1/1:64:0,64:0:0:64:2254:-203.12,-19.2659,0	0/1:332:271,61:271:9638:61:2161:-94.8136,0,-625.103	0/1:134:85,49:85:3052:49:1756:-117.986,0,-234.571	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:104:0,104:0:0:104:3709:-334.011,-31.3071,0	1/1:28:1,27:1:36:27:964:-83.4785,-4.83057,0	0/1:99:88,11:88:3148:11:396:-6.18078,0,-205.061	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:20:1,19:1:36:19:667:-56.7787,-2.45379,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.7539	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:349:-31.7447,-3.0103,0	1/1:110:0,110:0:0:110:3935:-354.342,-33.1133,0	0/1:95:78,17:78:2789:17:608:-26.4542,0,-222.623	0/1:33:15,18:15:540:18:648:-48.7175,0,-39.0025	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:104:74,30:74:2645:30:1074:-65.6653,0,-205.712	0/1:25:13,12:13:464:12:420:-30.6083,0,-34.5718	0/1:137:91,46:91:3234:46:1646:-107.188,0,-250.039	0/1:59:45,14:45:1620:14:504:-27.9373,0,-103.4	1/1:23:0,23:0:0:23:812:-73.3996,-6.92369,0	0/1:157:122,35:122:4333:35:1256:-66.0836,0,-298.963	0/1:134:84,50:84:3012:50:1784:-120.505,0,-230.888	0/1:275:204,71:204:7320:71:2548:-146.787,0,-474.971	1/1:59:0,59:0:0:59:2093:-188.638,-17.7608,0	1/1:62:0,62:0:0:62:2212:-199.345,-18.6639,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:9:7,2:7:252:2:68:-3.74844,0,-17.2165	0/1:110:68,42:68:2428:42:1508:-102.901,0,-185.663	0/1:108:92,16:92:3308:16:572:-19.3022,0,-219.249	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	0/1:100:63,37:63:2260:37:1315:-88.548,0,-173.377	0/1:70:58,12:58:2072:12:432:-18.1491,0,-126.735	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	0/1:9:5,4:5:161:4:144:-10.6043,0,-9.69207	1/1:41:0,41:0:0:41:1449:-130.704,-12.3422,0	1/1:72:0,72:0:0:72:2558:-230.47,-21.6742,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.06166	0/1:238:188,50:188:6728:50:1762:-87.2169,0,-436.846	1/1:70:0,70:0:0:70:2483:-223.722,-21.0721,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:57:0,57:0:0:57:2031:-183.062,-17.1587,0	0/1:222:186,36:186:6660:36:1288:-49.3949,0,-428.604	1/1:29:2,27:2:72:27:968:-80.6604,-1.95293,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:35:1,34:1:36:34:1220:-106.54,-6.96924,0	0/1:14:2,12:2:72:12:423:-34.1906,0,-2.56252	1/1:46:0,46:0:0:46:1636:-147.529,-13.8474,0	0/1:92:40,52:40:1432:52:1822:-136.562,0,-101.483	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:61:1,60:1:36:60:2152:-191.48,-15.8959,0	1/1:87:0,87:0:0:87:3096:-278.866,-26.1896,0	1/1:59:0,59:0:0:59:2093:-188.639,-17.7608,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:38:3,35:3:108:35:1252:-103.132,-1.58573,0	0/1:76:64,12:64:2300:12:432:-16.3429,0,-184.269	1/1:88:1,87:1:36:87:3124:-277.787,-22.8924,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:59:1,58:1:36:58:2062:-182.335,-14.2581,0	0/1:53:39,14:39:1404:14:504:-29.7435,0,-93.9355	1/1:110:5,105:5:180:105:3740:-324.411,-20.7247,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:54:31,23:31:1112:23:820:-57.8669,0,-84.1357	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:30:10,20:10:360:20:716:-55.7368,0,-23.7134	0/1:103:47,56:47:1688:56:2016:-150.707,0,-121.201	0/1:95:70,25:70:2516:25:881:-51.008,0,-153.051	1/1:69:0,69:0:0:69:2459:-221.564,-20.7711,0	1/1:63:0,63:0:0:63:2243:-202.133,-18.9649,0
chr08	1754205	.	C	G	43172.2	PASS	AB=0.526786;ABP=25.3454;AC=35;AF=0.18617;AN=188;AO=1898;CIGAR=1X;DP=10118;DPB=10118;DPRA=1.01355;EPP=40.907;EPPR=117.498;GTI=0;LEN=1;MEANALT=1.29545;MQM=59.9789;MQMR=59.9984;NS=94;NUMALT=1;ODDS=3.35313;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67178;QR=290295;RO=8187;RPL=1895;RPP=4098.45;RPPR=17668.1;RPR=3;RUN=1;SAF=1037;SAP=38.4495;SAR=861;SRF=3752;SRP=126.739;SRR=4435;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:59:58,0:58:2021:0:0:0,-17.4597,-181.8	0/0:132:132,0:132:4670:0:0:0,-39.736,-420.461	0/1:205:104,99:104:3668:99:3497:-253.471,0,-268.855	0/0:181:181,0:181:6380:0:0:0,-54.4864,-574.292	0/1:78:41,37:41:1450:37:1319:-95.5308,0,-107.314	0/1:63:34,29:34:1175:29:1022:-73.326,0,-87.0857	0/0:152:152,0:152:5396:0:0:0,-45.7566,-485.774	0/0:132:130,1:130:4603:1:36:0,-36.1965,-410.836	0/0:138:137,0:137:4839:0:0:0,-41.2411,-435.306	0/0:81:79,0:79:2813:0:0:0,-23.7814,-253.049	0/0:110:110,0:110:3891:0:0:0,-33.1133,-350.385	0/0:183:183,0:183:6496:0:0:0,-55.0885,-584.729	0/0:149:149,0:149:5297:0:0:0,-44.8535,-476.867	0/0:131:131,0:131:4601:0:0:0,-39.4349,-414.254	0/0:123:123,0:123:4354:0:0:0,-37.0267,-392.036	0/0:122:122,0:122:4355:0:0:0,-36.7257,-392.125	0/0:113:113,0:113:4024:0:0:0,-34.0164,-362.348	0/0:118:117,1:117:4177:1:36:0,-31.9233,-372.513	0/0:83:83,0:83:2935:0:0:0,-24.9855,-264.383	0/0:174:171,0:171:6061:0:0:0,-51.4761,-545.283	0/0:99:99,0:99:3495:0:0:0,-29.802,-314.759	0/1:55:15,40:15:531:40:1432:-112.621,0,-31.5653	0/0:93:93,0:93:3260:0:0:0,-27.9958,-293.621	0/1:100:61,39:61:2175:39:1387:-95.0252,0,-165.913	0/0:81:80,0:80:2844:0:0:0,-24.0824,-255.84	0/1:214:100,113:100:3559:113:3972:-293.196,0,-256.037	0/1:287:137,148:137:4841:148:5188:-380.909,0,-349.693	0/0:78:78,0:78:2773:0:0:0,-23.4803,-249.81	0/0:202:200,0:200:7071:0:0:0,-60.206,-636.092	0/0:87:85,2:85:3031:2:72:0,-19.3529,-266.184	0/1:109:52,57:52:1851:57:2000:-147.459,0,-134.057	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:323:319,0:319:11300:0:0:0,-96.0286,-1016.53	0/1:92:42,49:42:1504:49:1716:-126.192,0,-107.901	0/1:112:46,66:46:1640:66:2344:-177.502,0,-114.173	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:143:85,58:85:3031:58:2037:-140.552,0,-229.973	0/1:57:22,35:22:772:35:1251:-95.7356,0,-52.6426	0/1:156:82,73:82:2896:73:2597:-186.958,0,-213.854	0/1:107:57,50:57:2048:50:1766:-127.012,0,-152.381	0/0:112:112,0:112:3983:0:0:0,-33.7154,-358.66	0/1:95:44,51:44:1541:51:1815:-135.033,0,-110.379	0/1:94:35,59:35:1248:59:2060:-157.371,0,-84.328	0/1:175:81,94:81:2900:94:3356:-249.577,0,-208.556	0/0:107:106,1:106:3737:1:36:0,-28.6119,-332.93	0/0:139:137,1:137:4854:1:32:0,-38.6827,-433.796	0/0:123:123,0:123:4343:0:0:0,-37.0267,-391.046	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/1:95:37,56:37:1324:56:2004:-152.278,0,-91.1066	0/1:52:25,27:25:874:27:957:-70.7903,0,-63.3217	0/1:15:9,6:9:316:6:208:-14.5436,0,-24.2634	0/1:162:77,85:77:2724:85:3013:-222.634,0,-196.636	0/1:53:19,34:19:684:34:1200:-92.351,0,-45.9357	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:13:11,2:11:392:2:72:-2.92333,0,-31.7067	0/0:62:62,0:62:2206:0:0:0,-18.6639,-198.804	0/0:155:155,0:155:5512:0:0:0,-46.6596,-496.208	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:146:69,76:69:2442:76:2702:-199.415,0,-176.026	0/0:132:132,0:132:4691:0:0:0,-39.736,-422.351	0/0:66:66,0:66:2347:0:0:0,-19.868,-211.489	0/0:93:93,0:93:3304:0:0:0,-27.9958,-297.578	0/0:116:112,1:112:3975:1:36:0,-30.7779,-354.342	0/1:95:20,75:20:720:75:2633:-208.616,0,-36.5309	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/0:116:116,0:116:4124:0:0:0,-34.9195,-371.345	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/0:94:94,0:94:3335:0:0:0,-28.2968,-300.369	0/1:120:40,78:40:1436:78:2787:-215.189,0,-93.6563	0/0:185:185,0:185:6521:0:0:0,-55.6905,-586.977	0/0:146:145,0:145:5153:0:0:0,-43.6493,-463.554	0/0:114:114,0:114:4066:0:0:0,-34.3174,-366.127	0/0:121:120,1:120:4282:1:36:0,-32.8264,-381.956	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/0:144:143,1:143:5040:1:36:0,-39.75,-450.149	0/1:106:37,69:37:1305:69:2454:-189.205,0,-85.8402	0/0:222:221,1:221:7827:1:36:0,-63.2304,-700.855	0/0:134:134,0:134:4788:0:0:0,-40.338,-431.078	0/0:106:106,0:106:3749:0:0:0,-31.9092,-337.613	0/1:133:72,61:72:2571:61:2175:-155.979,0,-191.602	0/0:253:253,0:253:9008:0:0:0,-76.1606,-810.703	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.136	0/1:111:62,49:62:2181:49:1733:-122.838,0,-163.138	0/0:124:123,0:123:4367:0:0:0,-37.0267,-392.845	0/1:61:32,29:32:1148:29:1032:-74.8306,0,-85.267	0/1:132:70,62:70:2495:62:2196:-158.168,0,-185.067	0/1:123:50,73:50:1762:73:2577:-195.152,0,-121.835	0/0:102:102,0:102:3600:0:0:0,-30.7051,-324.206	0/0:203:203,0:203:7158:0:0:0,-61.1091,-644.28
chr08	1754427	.	A	G	314438	PASS	AB=0.490546;ABP=7.48545;AC=151;AF=0.803191;AN=188;AO=11689;CIGAR=1X;DP=14649;DPB=14649;DPRA=0;EPP=25376.7;EPPR=6424.05;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9812;MQMR=59.9878;NS=94;NUMALT=1;ODDS=1.95212;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=411645;QR=105341;RO=2957;RPL=7134;RPP=1238.62;RPPR=481.255;RPR=4555;RUN=1;SAF=7133;SAP=1236.7;SAR=4556;SRF=1882;SRP=481.255;SRR=1075;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:96:0,96:0:0:96:3339:-300.729,-28.8989,0	1/1:233:0,233:0:0:233:8196:-737.656,-70.14,0	0/1:219:109,110:109:3841:110:3856:-281.312,0,-279.959	1/1:289:1,288:1:36:288:10158:-910.561,-83.3994,0	0/1:171:85,86:85:3016:86:3045:-222.804,0,-220.193	0/1:106:42,64:42:1485:64:2245:-170.402,0,-102.033	1/1:163:1,162:1:36:162:5767:-515.55,-45.4696,0	1/1:252:0,252:0:0:252:8901:-801.078,-75.8596,0	1/1:179:0,179:0:0:179:6327:-569.527,-53.8844,0	1/1:159:0,159:0:0:159:5607:-504.755,-47.8638,0	1/1:122:1,121:1:36:121:4255:-379.533,-33.1274,0	1/1:145:0,145:0:0:145:5046:-454.294,-43.6494,0	1/1:160:0,160:0:0:160:5580:-502.331,-48.1648,0	1/1:135:0,135:0:0:135:4697:-422.881,-40.6391,0	1/1:136:0,136:0:0:136:4745:-427.213,-40.9401,0	1/1:129:0,129:0:0:129:4479:-403.286,-38.8329,0	1/1:116:1,115:1:36:115:4030:-359.293,-31.3212,0	1/1:93:0,93:0:0:93:3294:-296.681,-27.9958,0	1/1:67:0,67:0:0:67:2355:-212.207,-20.169,0	1/1:258:0,258:0:0:258:9086:-817.725,-77.6657,0	1/1:213:0,213:0:0:213:7496:-674.66,-64.1194,0	0/1:118:86,32:86:3064:32:1118:-65.4045,0,-240.469	1/1:136:2,134:2:72:134:4698:-416.146,-34.1034,0	0/1:135:62,73:62:2198:73:2599:-193.52,0,-157.428	1/1:151:0,151:0:0:151:5307:-477.771,-45.4555,0	0/1:469:220,249:220:7865:249:8728:-644.283,0,-566.694	0/1:347:198,149:198:7088:149:5280:-370.881,0,-533.52	1/1:61:0,61:0:0:61:2127:-191.694,-18.3628,0	1/1:312:0,312:0:0:312:10956:-985.948,-93.9214,0	0/1:195:19,176:19:680:176:6235:-502.551,0,-2.82831	0/1:249:127,122:127:4540:122:4304:-312.583,0,-333.811	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:300:0,300:0:0:300:10490:-944.04,-90.309,0	0/1:167:76,91:76:2707:91:3191:-237.143,0,-193.602	0/1:96:47,49:47:1662:49:1695:-123.932,0,-120.967	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:279:124,155:124:4440:155:5509:-411.949,0,-315.784	0/1:55:31,24:31:1104:24:848:-60.083,0,-83.114	0/1:299:143,156:143:5107:156:5499:-405.034,0,-369.766	0/1:132:64,68:64:2276:68:2364:-173.273,0,-165.367	1/1:103:2,101:2:72:101:3558:-313.593,-24.1694,0	0/1:156:76,80:76:2711:80:2835:-208.429,0,-197.273	0/1:199:106,93:106:3773:93:3324:-239.472,0,-279.864	0/1:255:154,101:154:5489:101:3586:-246.183,0,-417.375	1/1:176:0,175:0:0:175:6174:-555.405,-52.6803,0	1/1:284:0,282:0:0:282:9920:-892.396,-84.8905,0	1/1:128:0,128:0:0:128:4550:-409.669,-38.5318,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:139:79,60:79:2815:60:2140:-151.025,0,-211.746	0/1:83:39,44:39:1387:44:1560:-115.703,0,-100.143	0/1:22:12,10:12:417:10:356:-25.7586,0,-31.2376	0/1:240:122,118:122:4340:118:4115:-298.288,0,-318.527	0/1:79:44,35:44:1565:35:1208:-85.2387,0,-117.358	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	0/1:25:15,10:15:532:10:360:-25.2186,0,-40.6873	1/1:149:0,149:0:0:149:5243:-472.012,-44.8535,0	1/1:152:0,152:0:0:152:5287:-475.973,-45.7566,0	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	0/1:261:137,124:137:4895:124:4358:-313.827,0,-362.133	1/1:352:0,352:0:0:352:12496:-1124.48,-105.963,0	1/1:135:0,135:0:0:135:4782:-430.539,-40.6391,0	1/1:120:0,120:0:0:120:4219:-379.892,-36.1236,0	1/1:245:2,243:2:72:243:8630:-769.849,-66.9156,0	0/1:199:142,57:142:5079:57:2028:-122.888,0,-397.347	1/1:65:0,65:0:0:65:2282:-205.371,-19.567,0	1/1:107:0,107:0:0:107:3773:-339.769,-32.2102,0	1/1:130:0,130:0:0:130:4588:-413.089,-39.1339,0	1/1:39:0,39:0:0:39:1380:-124.499,-11.7402,0	1/1:144:0,144:0:0:144:5059:-455.46,-43.3483,0	0/1:138:68,70:68:2427:70:2469:-180.919,0,-177.143	1/1:265:0,265:0:0:265:9277:-834.913,-79.773,0	1/1:236:2,234:2:72:234:8233:-734.156,-64.2064,0	1/1:303:0,303:0:0:303:10755:-967.863,-91.2121,0	1/1:251:4,247:4:140:247:8721:-771.948,-62.614,0	0/1:19:10,9:10:360:9:301:-21.6941,0,-27.0247	1/1:179:0,179:0:0:179:6332:-569.978,-53.8844,0	0/1:255:147,108:147:5235:108:3806:-265.976,0,-394.528	1/1:317:3,314:3:108:314:11144:-992.782,-85.3513,0	1/1:105:0,105:0:0:105:3693:-332.573,-31.6082,0	1/1:108:0,108:0:0:108:3831:-344.987,-32.5112,0	0/1:124:78,46:78:2749:46:1594:-106.417,0,-210.325	1/1:233:1,232:1:36:232:8086:-724.14,-66.5417,0	1/1:51:0,51:0:0:51:1775:-160.029,-15.3525,0	0/1:128:60,68:60:2152:68:2368:-174.844,0,-155.415	1/1:133:0,133:0:0:133:4698:-422.975,-40.037,0	0/1:92:52,40:52:1821:40:1395:-98.15,0,-136.474	0/1:159:72,87:72:2562:87:3056:-227.404,0,-182.966	0/1:134:83,51:83:2955:51:1807:-122.573,0,-225.846	1/1:189:0,189:0:0:189:6671:-600.474,-56.8947,0	1/1:199:0,199:0:0:199:7024:-632.234,-59.905,0
chr08	1762683	.	A	G	143312	PASS	AB=0.476253;ABP=17.8611;AC=152;AF=0.808511;AN=188;AO=6611;CIGAR=1X;DP=8212;DPB=8212;DPRA=0;EPP=14358.6;EPPR=3470.85;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.8968;MQMR=59.9906;NS=94;NUMALT=1;ODDS=3.48819;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236368;QR=57183;RO=1597;RPL=0;RPP=14358.6;RPPR=3470.85;RPR=6611;RUN=1;SAF=6611;SAP=14358.6;SAR=0;SRF=1597;SRP=3470.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:712:-64.4043,-6.0206,0	1/1:159:0,159:0:0:159:5666:-510.055,-47.8638,0	0/1:80:53,27:53:1900:27:957:-62.3615,0,-147.196	1/1:186:1,184:1:21:184:6573:-589.55,-53.8006,0	0/1:105:43,62:43:1540:62:2192:-165.933,0,-107.285	0/1:69:33,36:33:1176:36:1288:-95.4516,0,-85.3767	1/1:66:0,66:0:0:66:2368:-213.377,-19.868,0	1/1:118:0,117:0:0:117:4184:-376.369,-35.2205,0	1/1:140:0,140:0:0:140:5016:-451.575,-42.1442,0	1/1:112:0,112:0:0:112:4012:-361.258,-33.7154,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:63:0,63:0:0:63:2251:-202.846,-18.9649,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:65:1,64:1:36:64:2264:-200.423,-15.9687,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:63:0,63:0:0:63:2245:-202.305,-18.9649,0	1/1:73:0,73:0:0:73:2624:-235.301,-21.9752,0	1/1:31:0,31:0:0:31:1112:-100.355,-9.33193,0	1/1:140:0,140:0:0:140:5001:-450.237,-42.1442,0	1/1:148:0,148:0:0:148:5316:-478.527,-44.5524,0	0/1:88:60,28:60:2152:28:1000:-63.8229,0,-167.457	1/1:87:0,87:0:0:87:3105:-279.437,-26.1896,0	0/1:111:39,72:39:1389:72:2565:-197.682,0,-91.8926	1/1:73:0,73:0:0:73:2598:-233.434,-21.9752,0	0/1:241:118,123:118:4221:123:4416:-324.905,0,-307.52	0/1:218:105,113:105:3776:113:4049:-298.969,0,-274.413	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:141:0,141:0:0:141:5025:-452.397,-42.4452,0	1/1:250:4,245:4:136:245:8749:-774.8,-62.7368,0	0/1:70:42,28:42:1512:28:1000:-69.1862,0,-115.303	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:8:0,8:0:0:8:284:-25.8846,-2.40824,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:220:0,220:0:0:220:7856:-707.068,-66.2266,0	0/1:208:113,95:113:4048:95:3377:-241.519,0,-301.893	0/1:44:18,26:18:648:26:936:-71.3048,0,-45.4066	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:116:49,67:49:1752:67:2404:-181.661,0,-123.045	0/1:32:18,14:18:648:14:500:-35.7023,0,-49.0189	0/1:140:78,62:78:2800:62:2202:-156.297,0,-210.095	0/1:75:42,33:42:1508:33:1184:-84.2911,0,-113.437	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:99:49,50:49:1745:50:1773:-130.049,0,-127.53	0/1:141:69,72:69:2468:72:2580:-190.002,0,-179.929	0/1:123:74,49:74:2644:49:1752:-120.937,0,-201.18	1/1:73:0,72:0:0:72:2584:-232.449,-21.6742,0	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	1/1:142:0,142:0:0:142:5089:-458.151,-42.7463,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:109:51,58:51:1809:58:2076:-154.294,0,-130.277	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:90:59,31:59:2112:31:1104:-72.5776,0,-163.256	0/1:45:19,26:19:684:26:932:-70.6525,0,-48.344	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:24:12,12:12:428:12:432:-31.9822,0,-31.6317	1/1:95:0,95:0:0:95:3373:-303.772,-28.5979,0	1/1:111:1,110:1:36:110:3948:-351.912,-29.8161,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:125:64,61:64:2296:61:2192:-159.917,0,-169.272	1/1:198:0,198:0:0:198:7035:-632.826,-59.6039,0	1/1:93:0,93:0:0:93:3298:-297.035,-27.9958,0	1/1:51:0,51:0:0:51:1809:-163.071,-15.3525,0	1/1:183:1,182:1:36:182:6513:-582.648,-51.4902,0	0/1:76:55,21:55:1976:21:748:-44.767,0,-155.236	1/1:25:1,24:1:36:24:864:-74.4843,-3.92748,0	1/1:63:0,63:0:0:63:2256:-203.3,-18.9649,0	1/1:66:0,66:0:0:66:2346:-211.397,-19.868,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:189:0,189:0:0:189:6738:-606.479,-56.8947,0	0/1:61:29,32:29:1044:32:1135:-84.0952,0,-75.912	1/1:133:0,133:0:0:133:4776:-429.993,-40.037,0	1/1:168:0,168:0:0:168:6019:-541.813,-50.573,0	1/1:73:0,73:0:0:73:2616:-235.682,-21.9752,0	1/1:95:0,95:0:0:95:3404:-306.572,-28.5979,0	0/1:21:17,4:17:608:4:144:-6.99199,0,-48.7304	1/1:105:0,105:0:0:105:3776:-340.032,-31.6082,0	0/1:87:45,42:45:1612:42:1500:-109.103,0,-119.18	1/1:123:0,123:0:0:123:4400:-396.128,-37.0267,0	1/1:100:0,100:0:0:100:3570:-321.483,-30.103,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	0/1:112:62,50:62:2228:50:1764:-125.325,0,-167.058	1/1:144:0,144:0:0:144:5180:-466.323,-43.3483,0	1/1:48:0,48:0:0:48:1724:-155.443,-14.4494,0	0/1:101:57,44:57:2022:44:1584:-112.447,0,-151.845	1/1:68:0,68:0:0:68:2448:-220.572,-20.47,0	0/1:20:5,15:5:180:15:540:-42.915,0,-10.5315	0/1:80:35,45:35:1260:45:1604:-120.567,0,-89.6231	0/1:76:55,21:55:1976:21:744:-44.406,0,-155.236	1/1:63:0,63:0:0:63:2264:-203.994,-18.9649,0	1/1:86:0,86:0:0:86:3075:-276.978,-25.8886,0
chr08	1762696	.	A	T	145794	PASS	AB=0.475626;ABP=18.6769;AC=152;AF=0.808511;AN=188;AO=6682;CIGAR=1X;DP=8285;DPB=8285;DPRA=0;EPP=14469.4;EPPR=3429.79;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.878;MQMR=59.9794;NS=94;NUMALT=1;ODDS=3.66451;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=239512;QR=57273;RO=1602;RPL=5;RPP=14469.4;RPPR=3429.79;RPR=6677;RUN=1;SAF=6682;SAP=14512.8;SAR=0;SRF=1602;SRP=3481.71;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:748:-67.6406,-6.32163,0	1/1:164:0,164:0:0:164:5864:-527.866,-49.3689,0	0/1:80:53,27:53:1881:27:964:-62.9944,0,-145.484	1/1:187:1,186:1:36:186:6650:-594.977,-52.6943,0	0/1:105:43,62:43:1544:62:2205:-167.103,0,-107.645	0/1:69:33,36:33:1184:36:1287:-95.3608,0,-86.0972	1/1:65:0,65:0:0:65:2325:-209.507,-19.567,0	1/1:116:1,115:1:36:115:4128:-368.113,-31.333,0	1/1:139:0,139:0:0:139:5000:-450.131,-41.8432,0	1/1:118:0,118:0:0:118:4232:-381.047,-35.5215,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:62:0,62:0:0:62:2228:-200.778,-18.6639,0	1/1:67:0,67:0:0:67:2408:-216.199,-20.169,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:65:0,65:0:0:65:2332:-210.133,-19.567,0	1/1:75:0,75:0:0:75:2700:-242.129,-22.5773,0	1/1:31:0,31:0:0:31:1112:-100.305,-9.33193,0	1/1:139:0,139:0:0:139:4989:-449.156,-41.8432,0	1/1:150:0,150:0:0:150:5387:-484.939,-45.1545,0	0/1:89:61,28:61:2192:28:1004:-63.8796,0,-170.754	1/1:87:0,87:0:0:87:3132:-281.849,-26.1896,0	0/1:109:40,69:40:1428:69:2465:-189.292,0,-96.0053	1/1:75:0,75:0:0:75:2696:-242.002,-22.5773,0	0/1:242:119,123:119:4276:123:4377:-321.227,0,-312.167	0/1:220:105,115:105:3729:115:4112:-304.036,0,-269.585	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:141:0,141:0:0:141:5052:-454.825,-42.4452,0	1/1:253:4,249:4:125:249:8890:-788.513,-64.602,0	0/1:71:42,29:42:1512:29:1044:-72.7718,0,-115.001	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:8:0,8:0:0:8:288:-26.222,-2.40824,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:7:0,7:0:0:7:248:-22.6464,-2.10721,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:222:0,222:0:0:222:7952:-715.703,-66.8287,0	0/1:207:113,94:113:4036:94:3376:-241.729,0,-301.116	0/1:45:18,27:18:648:27:972:-74.2422,0,-45.1055	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:115:49,66:49:1756:66:2372:-179.083,0,-123.706	0/1:32:19,13:19:676:13:468:-32.8258,0,-51.535	0/1:139:77,62:77:2764:62:2220:-158.22,0,-207.158	0/1:76:42,34:42:1500:34:1224:-87.5888,0,-112.416	1/1:61:0,61:0:0:61:2182:-196.418,-18.3628,0	0/1:98:49,49:49:1760:49:1756:-128.823,0,-129.183	0/1:140:68,72:68:2417:72:2584:-190.662,0,-175.641	0/1:123:74,49:74:2660:49:1764:-122.017,0,-202.619	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:93:0,93:0:0:93:3336:-300.456,-27.9958,0	1/1:145:0,145:0:0:145:5203:-468.407,-43.6494,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:111:51,60:51:1813:60:2152:-160.527,0,-130.035	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:91:60,31:60:2136:31:1108:-72.6369,0,-165.115	0/1:44:19,25:19:676:25:896:-67.715,0,-47.9227	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:23:12,11:12:417:11:392:-28.6821,0,-30.9342	1/1:95:0,95:0:0:95:3403:-306.468,-28.5979,0	1/1:112:1,111:1:36:111:3996:-356.229,-30.1171,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:126:64,62:64:2277:62:2209:-161.143,0,-167.261	1/1:200:0,200:0:0:200:7160:-643.578,-60.206,0	1/1:97:0,97:0:0:97:3468:-312.318,-29.1999,0	1/1:55:0,55:0:0:55:1947:-175.502,-16.5567,0	1/1:188:0,188:0:0:188:6748:-607.384,-56.5936,0	0/1:76:55,21:55:1968:21:748:-44.767,0,-154.517	1/1:25:1,24:1:36:24:864:-74.4843,-3.92748,0	1/1:63:0,63:0:0:63:2252:-202.939,-18.9649,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:189:1,188:1:36:188:6735:-602.631,-53.3082,0	0/1:61:29,32:29:1044:32:1133:-83.9138,0,-75.912	1/1:137:1,136:1:21:136:4876:-436.89,-39.1412,0	1/1:169:0,169:0:0:169:6071:-546.489,-50.8741,0	1/1:75:0,75:0:0:75:2688:-242.158,-22.5773,0	1/1:96:0,96:0:0:96:3440:-309.809,-28.8989,0	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	1/1:107:0,107:0:0:107:3844:-346.149,-32.2102,0	0/1:86:45,41:45:1601:41:1476:-107.245,0,-118.49	1/1:122:0,122:0:0:122:4382:-394.506,-36.7257,0	1/1:104:0,104:0:0:104:3740:-336.775,-31.3071,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:114:63,51:63:2264:51:1832:-130.843,0,-169.694	1/1:144:0,144:0:0:144:5172:-465.285,-43.3483,0	1/1:50:0,49:0:0:49:1764:-158.682,-14.7505,0	0/1:102:57,45:57:2048:45:1620:-115.367,0,-153.887	1/1:69:0,69:0:0:69:2484:-223.81,-20.7711,0	0/1:20:5,15:5:176:15:540:-42.915,0,-10.1644	0/1:80:35,45:35:1260:45:1612:-121.286,0,-89.6231	0/1:75:55,20:55:1972:20:720:-42.5515,0,-155.178	1/1:62:0,62:0:0:62:2196:-197.898,-18.6639,0	1/1:89:0,89:0:0:89:3184:-286.784,-26.7917,0
chr08	1762849	.	T	G	9196.8	PASS	AB=0.330428;ABP=604.685;AC=35;AF=0.18617;AN=188;AO=805;CIGAR=1X;DP=9382;DPB=9382;DPRA=0.659031;EPP=1742.37;EPPR=18562.6;GTI=8;LEN=1;MEANALT=1.04878;MQM=53.4124;MQMR=59.7772;NS=94;NUMALT=1;ODDS=0.0293035;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28270;QR=306307;RO=8571;RPL=2;RPP=1733.72;RPPR=17.482;RPR=803;RUN=1;SAF=3;SAP=1725.09;SAR=802;SRF=4409;SRP=18.467;SRR=4162;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.225	0/0:171:171,0:171:6132:0:0:0,-51.4761,-551.959	0/1:169:90,79:90:3232:79:2773:-197.967,0,-240.182	0/0:226:226,0:226:8050:0:0:0,-68.0328,-724.493	0/1:31:24,7:24:856:7:252:-13.6644,0,-67.8976	0/1:42:35,7:35:1256:7:252:-10.3222,0,-100.702	0/0:123:123,0:123:4387:0:0:0,-37.0267,-394.819	0/0:196:196,0:196:7007:0:0:0,-59.0019,-630.339	0/0:118:118,0:118:4215:0:0:0,-35.5215,-379.487	0/0:108:108,0:108:3848:0:0:0,-32.5112,-346.507	0/0:130:130,0:130:4653:0:0:0,-39.1339,-418.924	0/0:189:189,0:189:6761:0:0:0,-56.8947,-608.491	0/0:149:148,1:148:5282:1:36:0,-41.2642,-471.866	0/0:139:139,0:139:4967:0:0:0,-41.8432,-447.174	0/0:165:163,0:163:5852:0:0:0,-49.0679,-526.425	0/0:150:150,0:150:5360:0:0:0,-45.1545,-482.517	0/0:111:111,0:111:3966:0:0:0,-33.4143,-357.124	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.805	0/0:102:102,0:102:3640:0:0:0,-30.7051,-327.563	0/0:140:140,0:140:5007:0:0:0,-42.1442,-450.763	0/0:154:154,0:154:5510:0:0:0,-46.3586,-495.988	0/1:24:7,17:7:252:17:598:-46.8684,0,-15.8042	0/0:82:82,0:82:2923:0:0:0,-24.6845,-263.297	0/1:53:42,11:42:1508:11:388:-19.2336,0,-119.926	0/0:64:64,0:64:2300:0:0:0,-19.2659,-206.111	0/1:152:112,40:112:4015:40:1432:-83.2337,0,-315.77	0/1:156:113,43:113:4029:43:1511:-88.8661,0,-315.688	0/0:83:83,0:83:2976:0:0:0,-24.9855,-267.94	0/0:167:167,0:167:5983:0:0:0,-50.272,-537.143	0/0:96:95,1:95:3377:1:27:0,-26.4524,-301.685	0/1:91:66,25:66:2372:25:860:-50.0835,0,-186.337	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:4:2,2:2:72:2:72:-5.42387,0,-5.6326	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4751	0/0:337:337,0:337:12033:0:0:0,-101.447,-1082.73	0/1:43:28,15:28:993:15:536:-35.5506,0,-76.7336	0/1:85:47,38:47:1688:38:1347:-95.4578,0,-126.599	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:77:57,20:57:2044:20:698:-39.7266,0,-161.045	0/1:58:36,22:36:1283:22:755:-50.5615,0,-98.3113	0/1:81:62,19:62:2212:19:654:-34.562,0,-174.952	0/1:82:58,24:58:2061:24:827:-49.9572,0,-161.075	0/0:124:124,0:124:4404:0:0:0,-37.3277,-396.531	0/1:51:35,16:35:1247:16:558:-35.1809,0,-97.1725	0/1:66:49,17:49:1756:17:581:-32.1684,0,-138.454	0/1:84:53,31:53:1900:31:1112:-74.9496,0,-145.991	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.198	0/0:174:174,0:174:6231:0:0:0,-52.3792,-560.873	0/0:109:107,2:107:3817:2:72:0,-25.9755,-336.887	0/1:10:5,5:5:180:5:176:-13.1487,0,-13.5418	0/1:82:60,22:60:2156:22:764:-43.8985,0,-169.621	0/1:26:14,12:14:504:12:424:-30.6028,0,-37.8713	0/1:7:3,4:3:108:4:140:-10.8173,0,-7.96796	0/1:95:62,33:62:2216:33:1171:-76.6276,0,-171.101	0/1:26:18,8:18:648:8:288:-18.3392,0,-50.8251	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:10,2:10:345:2:72:-3.22245,0,-27.7685	0/0:121:121,0:121:4336:0:0:0,-36.4246,-390.088	0/0:191:189,0:189:6771:0:0:0,-56.8947,-609.088	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:54:45,9:45:1608:9:311:-12.0593,0,-128.754	0/0:143:143,0:143:5128:0:0:0,-43.0473,-461.656	0/0:93:93,0:93:3304:0:0:0,-27.9958,-297.571	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.142	0/0:113:113,0:113:4031:0:0:0,-34.0164,-362.96	0/1:68:43,25:43:1536:25:866:-57.7324,0,-118.056	0/0:123:122,1:122:4352:1:36:0,-33.4335,-388.203	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/0:115:115,0:115:4107:0:0:0,-34.6184,-369.815	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.5798	0/0:88:88,0:88:3110:0:0:0,-26.4906,-280.092	0/1:79:41,38:41:1476:38:1344:-97.1949,0,-109.338	0/0:156:156,0:156:5575:0:0:0,-46.9607,-501.734	0/0:135:135,0:135:4852:0:0:0,-40.639,-436.823	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.316	0/0:148:146,2:146:5244:2:72:0,-37.7329,-465.274	0/1:5:3,2:3:108:2:72:-5.31438,0,-8.57002	0/0:134:132,2:132:4736:2:72:0,-33.511,-419.33	0/1:91:60,31:60:2133:31:1080:-69.8852,0,-164.826	0/0:201:201,0:201:7193:0:0:0,-60.507,-646.695	0/0:167:167,0:167:5971:0:0:0,-50.272,-537.458	0/0:134:134,0:134:4773:0:0:0,-40.338,-429.621	0/1:95:73,21:73:2586:21:744:-38.5752,0,-204.329	0/0:249:249,0:249:8877:0:0:0,-74.9565,-798.904	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.54	0/1:108:72,35:72:2576:35:1229:-77.5507,0,-199.511	0/0:143:143,0:143:5093:0:0:0,-43.0473,-458.484	0/1:69:41,28:41:1464:28:992:-68.3501,0,-111.285	0/1:139:90,49:90:3182:49:1707:-111.494,0,-244.748	0/1:94:55,39:55:1976:39:1369:-95.1064,0,-149.732	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.173	0/0:232:232,0:232:8277:0:0:0,-69.839,-744.551
chr08	1768928	.	G	A	170766	PASS	AB=0.470034;ABP=30.3396;AC=152;AF=0.808511;AN=188;AO=7690;CIGAR=1X;DP=9565;DPB=9565;DPRA=0;EPP=15988.5;EPPR=3883.5;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9698;MQMR=60;NS=94;NUMALT=1;ODDS=0.386939;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=274960;QR=66950;RO=1874;RPL=73;RPP=16073.6;RPPR=3908.99;RPR=7617;RUN=1;SAF=7678;SAP=16597.6;SAR=12;SRF=1871;SRP=4046.33;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:169:0,169:0:0:169:6052:-544.777,-50.8741,0	0/1:99:53,46:53:1868:46:1638:-117.905,0,-138.595	1/1:258:1,257:1:36:257:9090:-814.449,-74.0675,0	0/1:61:31,30:31:1116:30:1076:-78.79,0,-82.3889	0/1:55:26,29:26:927:29:1029:-76.3645,0,-67.1907	1/1:182:0,182:0:0:182:6518:-586.7,-54.7875,0	1/1:407:0,407:0:0:407:14561:-1310.21,-122.519,0	1/1:142:0,142:0:0:142:5075:-456.704,-42.7463,0	1/1:156:0,156:0:0:156:5577:-502.052,-46.9607,0	1/1:36:0,36:0:0:36:1273:-114.871,-10.8371,0	1/1:102:0,102:0:0:102:3648:-328.525,-30.7051,0	1/1:63:0,63:0:0:63:2234:-201.321,-18.9649,0	1/1:41:0,41:0:0:41:1472:-132.773,-12.3422,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:64:0,64:0:0:64:2284:-205.799,-19.2659,0	1/1:38:0,38:0:0:38:1353:-122.07,-11.4391,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:201:0,201:0:0:201:7178:-646.074,-60.507,0	1/1:202:0,202:0:0:202:7221:-649.943,-60.8081,0	0/1:54:35,19:35:1247:19:676:-44.9124,0,-96.2785	1/1:83:0,83:0:0:83:2965:-267.068,-24.9855,0	0/1:144:68,76:68:2436:76:2724:-202.052,0,-176.147	1/1:85:0,85:0:0:85:3048:-274.521,-25.5876,0	0/1:362:178,184:178:6358:184:6588:-484.028,0,-463.335	0/1:245:134,111:134:4792:111:3992:-285.716,0,-357.685	1/1:34:1,33:1:36:33:1184:-103.27,-6.63675,0	1/1:254:1,253:1:36:253:9033:-809.351,-72.8633,0	1/1:180:7,173:7:252:173:6196:-534.708,-31.1564,0	0/1:119:54,65:54:1940:65:2336:-174.677,0,-139.054	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:27:0,27:0:0:27:957:-86.4393,-8.12781,0	0/1:30:4,26:4:129:26:920:-74.0862,0,-2.89676	1/1:14:0,14:0:0:14:500:-45.3358,-4.21442,0	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	1/1:210:0,210:0:0:210:7488:-673.924,-63.2163,0	0/1:155:95,60:95:3386:60:2152:-147.288,0,-258.293	0/1:68:35,33:35:1256:33:1180:-86.038,0,-92.8752	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:117:59,58:59:2101:58:2080:-152.25,0,-154.137	0/1:35:16,19:16:572:19:680:-50.9931,0,-41.2774	0/1:56:27,29:27:972:29:1040:-77.0567,0,-70.9402	0/1:56:35,21:35:1260:21:752:-51.1486,0,-96.8478	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:111:59,52:59:2055:52:1852:-133.546,0,-151.802	0/1:136:60,76:60:2152:76:2715:-203.654,0,-153.007	0/1:172:91,81:91:3252:81:2896:-209.099,0,-241.124	1/1:102:0,102:0:0:102:3645:-328.253,-30.7051,0	1/1:150:0,150:0:0:150:5361:-482.621,-45.1545,0	1/1:80:0,80:0:0:80:2859:-257.546,-24.0824,0	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/1:124:75,49:75:2700:49:1749:-120.364,0,-205.916	0/1:80:43,37:43:1548:37:1317:-94.7474,0,-115.531	0/1:28:12,16:12:413:16:572:-43.3846,0,-29.069	0/1:154:78,76:78:2800:76:2720:-198.685,0,-205.881	0/1:152:84,68:84:3020:68:2418:-171.987,0,-226.273	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:76:1,75:1:36:75:2696:-239.286,-19.28,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:218:112,106:112:4012:106:3808:-277.292,0,-295.644	1/1:200:0,200:0:0:200:7165:-644.904,-60.206,0	1/1:88:0,88:0:0:88:3144:-283.186,-26.4906,0	1/1:108:0,108:0:0:108:3876:-349.034,-32.5112,0	1/1:158:1,157:1:36:157:5620:-502.323,-43.9645,0	0/1:123:89,34:89:3185:34:1224:-73.4404,0,-249.845	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:106:0,106:0:0:106:3783:-340.656,-31.9092,0	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:109:2,107:2:68:107:3828:-338.259,-26.3546,0	0/1:73:46,27:46:1625:27:968:-65.4622,0,-124.562	1/1:186:0,186:0:0:186:6608:-594.799,-55.9916,0	1/1:141:0,141:0:0:141:5038:-453.563,-42.4452,0	1/1:77:0,76:0:0:76:2728:-245.403,-22.8783,0	1/1:108:0,108:0:0:108:3841:-345.885,-32.5112,0	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	1/1:120:1,119:1:36:119:4258:-379.798,-32.5253,0	0/1:130:70,60:70:2496:60:2148:-154.454,0,-185.759	1/1:273:0,273:0:0:273:9781:-880.219,-82.1812,0	1/1:106:0,106:0:0:106:3796:-341.838,-31.9092,0	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	0/1:72:38,34:38:1368:34:1212:-87.7122,0,-101.747	1/1:117:1,116:1:36:116:4149:-369.993,-31.6222,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:72:34,38:34:1203:38:1345:-99.6658,0,-86.9009	1/1:76:0,76:0:0:76:2736:-246.482,-22.8783,0	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	0/1:69:33,36:33:1165:36:1296:-96.1729,0,-84.3839	0/1:58:43,15:43:1548:15:540:-31.4734,0,-122.153	1/1:115:0,115:0:0:115:4132:-372.062,-34.6185,0	1/1:84:1,83:1:36:83:2953:-262.405,-21.6882,0
chr08	1768943	.	T	C	415050	PASS	AB=0.471357;ABP=51.524;AC=152;AF=0.808511;AN=188;AO=15374;CIGAR=1X;DP=19034;DPB=19034;DPRA=0;EPP=33265.7;EPPR=7896.33;GTI=0;LEN=1;MEANALT=1.1383;MQM=59.9852;MQMR=59.9964;NS=94;NUMALT=1;ODDS=3.0541;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=537204;QR=127028;RO=3647;RPL=7602;RPP=7.09223;RPPR=5.84506;RPR=7772;RUN=1;SAF=7592;SAP=8.10918;SAR=7782;SRF=1857;SRP=5.68311;SRR=1790;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:83:0,83:0:0:83:2867:-258.268,-24.9855,0	1/1:296:2,294:2:72:294:10282:-918.49,-82.2682,0	0/1:193:81,112:81:2845:112:3851:-288.694,0,-198.191	1/1:651:3,648:3:108:648:22652:-2028.04,-185.895,0	0/1:118:65,53:65:2251:53:1829:-129.365,0,-167.331	0/1:106:50,56:50:1710:56:1937:-142.696,0,-122.272	1/1:363:1,361:1:36:361:12634:-1133.33,-105.764,0	1/1:581:0,580:0:0:580:20451:-1839.9,-174.597,0	1/1:279:0,279:0:0:279:9741:-876.645,-83.9874,0	1/1:307:0,307:0:0:307:10719:-964.64,-92.4162,0	1/1:87:0,87:0:0:87:2995:-269.781,-26.1896,0	1/1:154:0,154:0:0:154:5365:-482.99,-46.3586,0	1/1:119:0,119:0:0:119:4179:-376.297,-35.8226,0	1/1:88:0,88:0:0:88:3042:-274.005,-26.4906,0	1/1:126:2,124:2:72:124:4308:-381.063,-31.0931,0	1/1:100:1,99:1:32:99:3484:-310.518,-26.9037,0	1/1:82:1,81:1:27:81:2830:-252.239,-21.9847,0	1/1:90:1,89:1:36:89:3142:-279.409,-23.4944,0	1/1:66:0,66:0:0:66:2311:-208.249,-19.868,0	1/1:384:0,384:0:0:384:13456:-1210.85,-115.596,0	1/1:353:0,353:0:0:353:12238:-1101.3,-106.264,0	0/1:118:71,47:71:2444:47:1653:-113.534,0,-184.693	1/1:209:2,207:2:72:207:7177:-639.151,-56.0785,0	0/1:296:149,146:149:5195:146:5138:-373.4,0,-378.537	1/1:164:2,161:2:59:161:5627:-500.931,-43.802,0	0/1:705:340,365:340:11831:365:12859:-944.92,0,-852.459	0/1:467:240,227:240:8419:227:7949:-574.865,0,-617.152	1/1:64:1,63:1:36:63:2221:-196.554,-15.6676,0	1/1:667:2,665:2:72:665:23165:-2077.46,-193.95,0	1/1:327:14,313:14:496:313:10972:-942.419,-53.4625,0	0/1:288:138,150:138:4813:150:5271:-387.834,0,-346.639	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:40:0,40:0:0:40:1401:-126.38,-12.0412,0	0/1:34:4,30:4:144:30:1080:-87.2782,0,-3.0786	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:20:0,20:0:0:20:687:-62.1465,-6.0206,0	1/1:347:1,346:1:36:346:12105:-1085.73,-100.859,0	0/1:312:167,145:167:5837:145:5089:-364.239,0,-431.532	0/1:119:58,61:58:1941:61:2111:-154.432,0,-139.133	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:292:151,141:151:5216:141:4904:-353.618,0,-381.69	0/1:65:34,31:34:1182:31:1102:-79.9236,0,-87.1161	0/1:202:104,98:104:3561:98:3380:-243.608,0,-259.898	0/1:112:70,42:70:2427:42:1490:-100.678,0,-184.971	1/1:111:1,110:1:27:110:3834:-342.56,-30.7145,0	0/1:252:147,105:147:5135:105:3698:-257.165,0,-386.439	0/1:210:95,114:95:3283:114:4025:-299.316,0,-232.567	0/1:301:171,129:171:5985:129:4541:-318.339,0,-448.247	1/1:222:0,222:0:0:222:7713:-694.223,-66.8287,0	1/1:309:0,308:0:0:308:10778:-969.584,-92.7172,0	1/1:302:0,302:0:0:302:10491:-944.136,-90.9111,0	0/1:18:15,3:15:521:3:108:-4.65663,0,-41.7978	0/1:228:130,98:130:4539:98:3439:-241.088,0,-340.049	0/1:172:105,67:105:3605:67:2377:-162.41,0,-272.886	0/1:35:14,21:14:491:21:728:-55.3017,0,-33.9851	0/1:307:166,141:166:5788:141:4933:-351.71,0,-428.633	0/1:216:118,98:118:4145:98:3401:-241.195,0,-308.217	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:34:21,13:21:740:13:464:-31.8625,0,-56.6883	1/1:185:0,185:0:0:185:6447:-580.329,-55.6906,0	1/1:161:1,160:1:36:160:5585:-499.185,-44.8676,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:414:217,196:217:7584:196:6931:-499.177,0,-557.929	1/1:338:2,335:2:63:335:11664:-1043.67,-95.7822,0	1/1:191:0,191:0:0:191:6625:-596.343,-57.4967,0	1/1:201:0,201:0:0:201:6957:-626.214,-60.507,0	1/1:334:5,329:5:172:329:11501:-1019.17,-84.726,0	0/1:187:124,63:124:4379:63:2229:-144.581,0,-337.994	1/1:30:0,30:0:0:30:1048:-94.6273,-9.0309,0	1/1:219:1,218:1:36:218:7635:-683.593,-62.3273,0	1/1:140:0,140:0:0:140:4873:-438.729,-42.1442,0	1/1:43:0,43:0:0:43:1484:-133.85,-12.9443,0	1/1:235:2,233:2:68:233:8107:-723.209,-64.2843,0	0/1:141:94,46:94:3301:46:1621:-103.712,0,-254.848	1/1:402:1,401:1:36:401:13963:-1252.88,-117.416,0	1/1:336:0,336:0:0:336:11818:-1063.5,-101.146,0	1/1:157:0,157:0:0:157:5556:-500.167,-47.2617,0	1/1:209:1,207:1:36:207:7273:-651.035,-59.3758,0	0/1:21:7,14:7:252:14:500:-39.0145,0,-16.7073	1/1:274:2,271:2:68:271:9569:-854.716,-76.0767,0	0/1:287:152,135:152:5251:135:4723:-338.84,0,-386.346	1/1:566:2,563:2:72:563:19656:-1761.83,-163.512,0	1/1:175:0,175:0:0:175:6092:-548.389,-52.6803,0	1/1:106:0,106:0:0:106:3686:-331.944,-31.9092,0	0/1:139:74,65:74:2593:65:2253:-161.187,0,-191.777	1/1:233:1,232:1:36:232:8080:-723.636,-66.5417,0	1/1:67:0,67:0:0:67:2383:-214.728,-20.169,0	0/1:117:50,67:50:1775:67:2288:-170.958,0,-124.812	1/1:132:0,132:0:0:132:4615:-415.519,-39.736,0	0/1:54:27,27:27:938:27:914:-66.3102,0,-68.4762	0/1:151:74,77:74:2565:77:2639:-192.3,0,-185.644	0/1:91:66,25:66:2322:25:881:-52.2084,0,-181.847	1/1:290:0,290:0:0:290:9981:-898.262,-87.2987,0	1/1:165:1,164:1:36:164:5727:-511.956,-46.0717,0
chr08	1768976	.	T	C	191343	PASS	AB=0.446552;ABP=99.8048;AC=151;AF=0.811828;AN=186;AO=8535;CIGAR=1X;DP=10729;DPB=10729;DPRA=29.144;EPP=16707.9;EPPR=4127.24;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.9864;MQMR=60;NS=93;NUMALT=1;ODDS=0.900157;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302845;QR=78479;RO=2189;RPL=8319;RPP=16707.9;RPPR=4127.24;RPR=216;RUN=1;SAF=0;SAP=18536.5;SAR=8535;SRF=0;SRP=4756.36;SRR=2189;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57:0:0:57:2001:-180.362,-17.1587,0	1/1:139:0,139:0:0:139:4911:-442.146,-41.8432,0	0/1:111:40,71:40:1428:71:2508:-192.56,0,-95.4032	1/1:438:2,436:2:72:436:15403:-1379.16,-125.014,0	0/1:64:36,28:36:1296:28:995:-70.5981,0,-97.678	0/1:63:34,29:34:1220:29:1040:-74.9495,0,-91.1419	1/1:198:0,198:0:0:198:7054:-634.878,-59.6039,0	1/1:191:0,191:0:0:191:6771:-609.466,-57.4967,0	1/1:159:0,158:0:0:158:5594:-503.229,-47.5627,0	1/1:163:0,163:0:0:163:5815:-523.465,-49.0679,0	1/1:56:0,56:0:0:56:1984:-178.832,-16.8577,0	1/1:59:0,59:0:0:59:2055:-185.218,-17.7608,0	1/1:62:0,62:0:0:62:2200:-198.264,-18.6639,0	1/1:55:0,55:0:0:55:1936:-174.513,-16.5567,0	1/1:65:1,64:1:36:64:2296:-203.303,-15.9687,0	1/1:41:0,41:0:0:41:1457:-131.424,-12.3422,0	1/1:47:1,46:1:36:46:1646:-144.83,-10.5501,0	1/1:44:1,43:1:36:43:1522:-133.673,-9.64705,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:195:0,195:0:0:195:6930:-623.772,-58.7009,0	1/1:181:0,181:0:0:181:6405:-576.546,-54.4864,0	0/1:73:41,32:41:1468:32:1135:-80.4829,0,-110.441	1/1:137:0,135:0:0:135:4815:-433.147,-40.6391,0	0/1:179:97,82:97:3488:82:2893:-206.723,0,-260.245	1/1:92:1,91:1:36:91:3245:-288.674,-24.0965,0	0/1:419:214,205:214:7680:205:7296:-530.566,0,-565.1	0/1:276:136,140:136:4853:140:4948:-362.33,0,-353.839	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:438:1,437:1:36:437:15490:-1390.22,-128.253,0	1/1:162:7,155:7:248:155:5540:-476.062,-26.1027,0	0/1:183:97,86:97:3484:86:3064:-220.902,0,-258.682	.:.:.:.:.:.:.:.	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:157:0,156:0:0:156:5531:-497.559,-46.9607,0	0/1:183:90,93:90:3240:93:3311:-243.121,0,-236.732	0/1:70:38,32:38:1364:32:1148:-82.5471,0,-101.989	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:204:116,88:116:4160:88:3110:-218.719,0,-313.172	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	0/1:163:89,74:89:3204:74:2631:-187.97,0,-239.514	0/1:63:38,25:38:1360:25:883:-60.8226,0,-103.736	1/1:59:2,57:2:72:57:2005:-173.886,-10.924,0	0/1:163:112,51:112:4020:51:1799:-113.123,0,-312.92	0/1:91:47,44:47:1679:44:1559:-113.207,0,-124.003	0/1:161:104,57:104:3728:57:2035:-134.956,0,-287.255	1/1:130:0,130:0:0:130:4611:-415.156,-39.1339,0	1/1:169:0,169:0:0:169:6013:-541.277,-50.8741,0	1/1:248:0,247:0:0:247:8767:-788.666,-74.3544,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:128:71,57:71:2552:57:2008:-142.46,0,-191.398	0/1:109:76,33:76:2728:33:1180:-73.6958,0,-212.95	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:189:116,73:116:4160:73:2592:-176.635,0,-317.687	0/1:78:43,35:43:1536:35:1244:-88.7843,0,-115.053	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	1/1:134:0,134:0:0:134:4772:-429.637,-40.338,0	1/1:93:0,93:0:0:93:3288:-296.138,-27.9958,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:225:119,106:119:4264:106:3769:-271.678,0,-316.206	1/1:158:3,155:3:108:155:5491:-484.248,-37.4876,0	1/1:113:0,113:0:0:113:4018:-361.81,-34.0164,0	1/1:100:0,100:0:0:100:3576:-322.048,-30.103,0	1/1:201:4,197:4:144:197:7017:-618.283,-47.1934,0	0/1:80:46,34:46:1652:34:1196:-83.863,0,-124.886	1/1:20:0,20:0:0:20:698:-63.1414,-6.0206,0	1/1:128:1,127:1:36:127:4516:-403.013,-34.9336,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:146:0,146:0:0:146:5121:-461.04,-43.9504,0	0/1:73:56,17:56:2016:17:612:-33.4382,0,-159.738	1/1:248:1,247:1:36:247:8745:-783.443,-71.0572,0	1/1:208:0,208:0:0:208:7402:-666.231,-62.6142,0	1/1:100:0,100:0:0:100:3538:-318.631,-30.103,0	1/1:104:0,104:0:0:104:3710:-334.102,-31.3071,0	0/1:9:4,5:4:136:5:180:-13.8428,0,-9.86627	1/1:172:1,171:1:36:171:6069:-542.719,-48.1789,0	0/1:192:106,86:106:3779:86:3039:-215.943,0,-282.512	1/1:310:0,310:0:0:310:11008:-990.622,-93.3193,0	1/1:76:0,76:0:0:76:2703:-243.515,-22.8783,0	1/1:53:0,53:0:0:53:1879:-169.388,-15.9546,0	0/1:74:39,35:39:1400:35:1248:-90.3486,0,-104.023	1/1:128:0,128:0:0:128:4519:-406.879,-38.5318,0	1/1:39:0,39:0:0:39:1396:-125.931,-11.7402,0	0/1:55:23,32:23:824:32:1135:-85.9014,0,-57.9267	1/1:61:0,61:0:0:61:2171:-195.656,-18.3628,0	0/1:41:21,20:21:748:20:696:-50.6174,0,-55.3031	0/1:92:48,44:48:1728:44:1568:-113.717,0,-128.111	0/1:40:31,9:31:1092:9:324:-17.4642,0,-86.5456	1/1:188:0,188:0:0:188:6584:-592.654,-56.5936,0	1/1:87:0,87:0:0:87:3105:-279.677,-26.1896,0
chr08	1768992	.	C	G	189225	PASS	AB=0.450444;ABP=87.1616;AC=151;AF=0.811828;AN=186;AO=8726;CIGAR=1X;DP=10926;DPB=10926;DPRA=29.6793;EPP=18951.3;EPPR=4747.69;GTI=1;LEN=1;MEANALT=1.07609;MQM=59.9804;MQMR=60;NS=93;NUMALT=1;ODDS=0.157661;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312106;QR=78393;RO=2193;RPL=8726;RPP=18951.3;RPPR=4747.69;RPR=0;RUN=1;SAF=0;SAP=18951.3;SAR=8726;SRF=0;SRP=4765.05;SRR=2193;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62:0:0:62:2204:-198.626,-18.6639,0	1/1:143:0,143:0:0:143:5107:-459.774,-43.0473,0	0/1:112:39,73:39:1366:73:2620:-202.332,0,-89.5191	1/1:446:1,444:1:36:444:15892:-1426.35,-130.72,0	0/1:67:37,30:37:1305:30:1076:-76.9838,0,-97.5804	0/1:64:34,30:34:1220:30:1072:-77.5265,0,-90.8409	1/1:199:0,199:0:0:199:7110:-639.92,-59.905,0	1/1:199:0,199:0:0:199:7111:-640.05,-59.905,0	1/1:169:0,169:0:0:169:6064:-545.855,-50.8741,0	1/1:166:0,166:0:0:166:5952:-535.786,-49.971,0	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:66:1,64:1:36:64:2300:-203.682,-16.3086,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:48:1,47:1:36:47:1686:-148.429,-10.8512,0	1/1:47:0,47:0:0:47:1671:-150.677,-14.1484,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:199:0,199:0:0:199:7108:-639.781,-59.905,0	1/1:184:0,184:0:0:184:6550:-589.586,-55.3895,0	0/1:76:43,33:43:1536:33:1172:-82.9092,0,-115.655	1/1:141:0,141:0:0:141:5047:-454.375,-42.4452,0	0/1:184:98,86:98:3516:86:3084:-222.398,0,-261.26	1/1:93:1,92:1:36:92:3280:-291.821,-24.3975,0	0/1:426:220,205:220:7835:205:7344:-532.71,0,-576.881	0/1:275:139,136:139:4988:136:4868:-354.863,0,-366.283	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:454:1,452:1:36:452:16148:-1449.4,-133.128,0	1/1:165:6,158:6:216:158:5676:-491.166,-29.9382,0	0/1:185:97,88:97:3465:88:3168:-229.653,0,-256.37	.:.:.:.:.:.:.:.	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:158:0,158:0:0:158:5626:-506.464,-47.5627,0	0/1:184:91,93:91:3256:93:3328:-244.348,0,-237.872	0/1:69:37,32:37:1317:32:1139:-82.043,0,-98.0588	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:208:117,91:117:4196:91:3235:-228.758,0,-315.206	0/1:32:18,14:18:644:14:496:-35.3413,0,-48.6576	0/1:168:90,78:90:3228:78:2796:-201.307,0,-240.169	0/1:63:37,26:37:1328:26:936:-65.5946,0,-100.857	1/1:59:2,57:2:72:57:2039:-176.945,-10.924,0	0/1:162:107,55:107:3809:55:1960:-127.872,0,-294.241	0/1:90:46,44:46:1652:44:1584:-115.759,0,-121.876	0/1:163:103,60:103:3683:60:2135:-143.35,0,-282.605	1/1:131:0,131:0:0:131:4672:-420.643,-39.4349,0	1/1:174:0,174:0:0:174:6236:-561.333,-52.3792,0	1/1:254:0,254:0:0:254:9100:-818.974,-76.4616,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:125:68,57:68:2436:57:2040:-146.243,0,-181.867	0/1:107:73,33:73:2620:33:1184:-74.6381,0,-203.818	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:187:113,74:113:4048:74:2664:-183.712,0,-308.215	0/1:78:43,35:43:1521:35:1244:-88.7843,0,-113.701	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	0/1:15:12,3:12:432:3:104:-5.18736,0,-34.7057	1/1:131:0,130:0:0:130:4667:-419.869,-39.1339,0	1/1:97:0,97:0:0:97:3459:-311.522,-29.1999,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:234:124,110:124:4433:110:3940:-284.351,0,-328.699	1/1:163:3,160:3:108:160:5740:-506.64,-38.9927,0	1/1:113:0,113:0:0:113:4048:-364.507,-34.0164,0	1/1:104:0,104:0:0:104:3720:-335.002,-31.3071,0	1/1:200:3,197:3:108:197:7072:-626.462,-50.1308,0	0/1:81:47,34:47:1688:34:1212:-85.0029,0,-127.824	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:129:1,128:1:36:128:4581:-408.855,-35.2346,0	1/1:67:0,67:0:0:67:2395:-215.806,-20.169,0	1/1:30:0,30:0:0:30:1055:-95.26,-9.0309,0	1/1:150:1,149:1:32:149:5301:-474.026,-41.9552,0	0/1:75:57,18:57:2037:18:644:-35.7133,0,-161.023	1/1:258:1,257:1:36:257:9199:-824.268,-74.0675,0	1/1:214:0,214:0:0:214:7670:-690.334,-64.4204,0	1/1:100:0,100:0:0:100:3558:-320.43,-30.103,0	1/1:106:0,106:0:0:106:3779:-340.31,-31.9092,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:176:1,175:1:32:175:6272:-561.374,-49.782,0	0/1:194:107,87:107:3840:87:3100:-220.829,0,-287.396	1/1:318:0,318:0:0:318:11381:-1024.17,-95.7275,0	1/1:77:0,77:0:0:77:2772:-249.72,-23.1793,0	1/1:54:0,54:0:0:54:1926:-173.616,-16.2556,0	0/1:75:39,36:39:1387:36:1274:-92.3842,0,-102.551	1/1:130:0,130:0:0:130:4647:-418.392,-39.1339,0	1/1:39:0,39:0:0:39:1404:-126.651,-11.7402,0	0/1:55:23,32:23:820:32:1135:-85.9014,0,-57.5659	1/1:63:0,63:0:0:63:2238:-201.683,-18.9649,0	0/1:42:22,20:22:792:20:716:-52.1245,0,-58.9624	0/1:94:49,45:49:1756:45:1608:-116.713,0,-130.027	0/1:40:30,10:30:1059:10:351:-19.8851,0,-83.5792	1/1:193:0,193:0:0:193:6880:-619.272,-58.0988,0	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0
chr08	1825525	.	AAGAA	AAGAG,GAGAG	226547	PASS	AB=0.511593,0.48367;ABP=7.69269,12.3009;AC=148,38;AF=0.795699,0.204301;AN=186;AO=8537,1967;CIGAR=4M1X,1X3M1X;DP=10557;DPB=10558;DPRA=57.9835,1.23472;EPP=18532.2,4274.3;EPPR=7.35324;GTI=2;LEN=1,5;MEANALT=2.05495,2.5102;MQM=59.9831,59.938;MQMR=60;NS=93;NUMALT=2;ODDS=1.83229;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=72,72;PQR=0;PRO=1;QA=303052,68610;QR=72;RO=2;RPL=0,0;RPP=18540.9,4274.3;RPPR=7.35324;RPR=8537,1967;RUN=1,1;SAF=1,0;SAP=18532.2,4274.3;SAR=8536,1967;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1031,0:-93.0949,-9.0309,0,-93.0949,-9.0309,-93.0949	1/1:205:0,197,7:0:0:197,7:6974,248:-627.364,-59.3029,0,-607.161,-39.1575,-605.054	1/2:134:0,68,66:0:0:68,66:2394,2326:-384.627,-189.734,-169.264,-195.245,0,-175.377	1/1:222:0,220,0:0:0:220,0:7753,0:-697.507,-66.2266,0,-697.507,-66.2266,-697.507	1/2:91:0,49,42:0:0:49,42:1742,1462:-261.19,-119.229,-104.479,-142.312,0,-129.669	1/2:87:0,49,38:0:0:49,38:1745,1330:-250.79,-108.561,-93.8104,-142.582,0,-131.143	1/1:146:0,145,0:0:0:145,0:5192,0:-467.079,-43.6494,0,-467.079,-43.6494,-467.079	1/1:233:0,230,1:0:0:230,1:8162,31:-733.82,-69.2369,0,-731.331,-66.7517,-731.03	1/1:77:0,77,0:0:0:77,0:2722,0:-245.224,-23.1793,0,-245.224,-23.1793,-245.224	1/1:153:0,151,1:0:0:151,1:5366,36:-482.753,-45.4555,0,-479.815,-42.4782,-479.514	1/1:55:0,55,0:0:0:55,0:1930,0:-173.976,-16.5567,0,-173.976,-16.5567,-173.976	1/1:88:0,87,0:0:0:87,0:3090,0:-277.998,-26.1896,0,-277.998,-26.1896,-277.998	1/1:69:0,69,0:0:0:69,0:2436,0:-219.494,-20.7711,0,-219.494,-20.7711,-219.494	1/1:47:0,46,0:0:0:46,0:1648,0:-148.249,-13.8474,0,-148.249,-13.8474,-148.249	1/1:98:0,98,0:0:0:98,0:3470,0:-312.514,-29.5009,0,-312.514,-29.5009,-312.514	1/1:57:0,57,0:0:0:57,0:2031,0:-183.062,-17.1587,0,-183.062,-17.1587,-183.062	1/1:61:0,60,1:0:0:60,1:2116,36:-190.35,-18.0618,0,-187.412,-14.7646,-187.111	1/1:86:0,85,0:0:0:85,0:3010,0:-270.77,-25.5876,0,-270.77,-25.5876,-270.77	1/1:23:0,23,0:0:0:23,0:815,0:-73.6708,-6.92369,0,-73.6708,-6.92369,-73.6708	1/1:257:0,257,0:0:0:257,0:9144,0:-822.936,-77.3647,0,-822.936,-77.3647,-822.936	1/1:134:0,131,0:0:0:131,0:4678,0:-420.863,-39.4349,0,-420.863,-39.4349,-420.863	1/2:135:0,66,69:0:0:66,69:2355,2410:-388.374,-196.386,-176.518,-192.34,0,-171.569	1/1:155:0,154,0:0:0:154,0:5466,0:-491.71,-46.3586,0,-491.71,-46.3586,-491.71	1/2:161:0,95,66:0:0:95,66:3379,2293:-462.123,-186.744,-158.146,-275.729,0,-255.861	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/2:380:0,191,188:0:0:191,188:6828,6507:-1085.52,-528.781,-471.285,-556.733,0,-500.139	1/2:188:0,121,67:0:0:121,67:4323,2350:-544.059,-191.59,-155.165,-352.822,0,-332.653	1/1:55:0,55,0:0:0:55,0:1963,0:-176.945,-16.5567,0,-176.945,-16.5567,-176.945	1/1:286:0,286,0:0:0:286,0:10153,0:-913.706,-86.0946,0,-913.706,-86.0946,-913.706	1/1:182:0,181,1:0:0:181,1:6431,33:-578.654,-54.4864,0,-575.986,-51.7135,-575.685	1/2:109:0,52,57:0:0:52,57:1825,2000:-311.62,-163.096,-147.442,-148.875,0,-131.717	1/2:8:0,5,3:0:0:5,3:176,107:-23.4042,-9.07908,-7.57393,-14.6799,0,-13.7768	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:5:0,3,2:0:0:3,2:104,72:-14.6799,-6.23466,-5.33157,-8.79971,0,-8.19765	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:221:0,218,0:0:0:218,0:7675,0:-690.513,-65.6245,0,-690.513,-65.6245,-690.513	1/2:256:0,109,146:0:0:109,146:3903,5071:-730.528,-412.231,-379.419,-318.291,0,-274.34	1/2:69:0,32,37:0:0:32,37:1135,1288:-197.556,-105.082,-95.4493,-92.8251,0,-81.687	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:163:0,71,90:0:0:71,90:2475,3131:-455.935,-254.655,-233.282,-201.356,0,-174.263	1/2:31:0,13,18:0:0:13,18:464,636:-89.9782,-52.1493,-48.236,-38.1841,0,-32.7656	1/2:272:0,140,128:0:0:140,128:4969,4455:-767.156,-362.289,-320.145,-404.909,0,-366.377	1/2:97:0,50,47:0:0:50,47:1784,1652:-280.256,-134.819,-119.767,-145.791,0,-131.643	1/1:95:0,94,0:0:0:94,0:3265,0:-293.711,-28.2968,0,-293.711,-28.2968,-293.711	1/2:76:0,39,36:0:0:39,36:1378,1266:-215.309,-103.084,-91.3438,-112.256,0,-101.419	1/2:140:0,63,77:0:0:63,77:2204,2671:-396.766,-217.458,-198.493,-179.656,0,-156.477	1/2:223:0,119,102:0:0:119,102:4239,3571:-636.102,-290.585,-254.763,-345.553,0,-314.848	1/1:137:0,135,1:0:0:135,1:4784,34:-430.367,-40.6391,0,-427.609,-37.8909,-427.308	1/1:189:0,189,0:0:0:189,0:6734,0:-606.135,-56.8947,0,-606.135,-56.8947,-606.135	1/1:158:0,157,0:0:0:157,0:5580,0:-501.966,-47.2617,0,-501.966,-47.2617,-501.966	2/2:2:0,0,2:0:0:0,2:0,71:-6.74206,-6.74206,-6.74206,-0.60206,-0.60206,0	1/2:134:0,77,56:0:0:77,56:2748,1971:-384.474,-160.445,-137.266,-224.024,0,-207.166	1/2:56:0,42,14:0:0:42,14:1480,491:-160.803,-40.3052,-27.6619,-120.848,0,-116.634	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:147:0,82,65:0:0:82,65:2919,2240:-420.194,-182.296,-157.611,-238.247,0,-218.68	1/2:45:0,27,18:0:0:27,18:951,637:-129.663,-52.24,-44.1122,-77.7765,0,-72.358	.:.:.:.:.:.:.:.	1/2:16:0,6,9:0:0:6,9:216,312:-43.0698,-25.437,-23.6309,-17.7101,0,-15.0008	1/1:69:0,69,0:0:0:69,0:2454,0:-221.11,-20.7711,0,-221.11,-20.7711,-221.11	1/1:136:0,133,1:0:0:133,1:4712,35:-423.888,-40.037,0,-421.04,-37.1926,-420.739	1/1:6:0,6,0:0:0:6,0:186,0:-17.0436,-1.80618,0,-17.0436,-1.80618,-17.0436	1/2:258:0,166,90:0:0:166,90:5908,3173:-739.92,-258.412,-208.441,-481.57,0,-454.477	1/1:327:0,327,0:0:0:327,0:11641,0:-1047.54,-98.4368,0,-1047.54,-98.4368,-1047.54	1/1:65:0,65,0:0:0:65,0:2319,0:-208.97,-19.567,0,-208.97,-19.567,-208.97	1/1:87:1,85,0:1:36:85,0:2998,0:-266.492,-22.6102,0,-266.793,-25.5876,-269.73	1/1:186:0,183,1:0:0:183,1:6509,36:-584.243,-55.0885,0,-581.305,-52.1161,-581.004	1/2:127:0,48,79:0:0:48,79:1682,2767:-362.04,-225.175,-210.725,-137.216,0,-113.434	1/1:16:0,15,0:0:0:15,0:531,0:-47.8092,-4.51545,0,-47.8092,-4.51545,-47.8092	1/1:64:0,63,1:0:0:63,1:2245,36:-201.952,-18.9649,0,-199.014,-15.6676,-198.713	1/1:98:0,96,0:0:0:96,0:3402,0:-306.037,-28.8989,0,-306.037,-28.8989,-306.037	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:76:0,76,0:0:0:76,0:2703,0:-243.514,-22.8783,0,-243.514,-22.8783,-243.514	1/2:39:0,10,28:0:0:10,28:356,971:-107.987,-78.9686,-75.9583,-29.0661,0,-20.6373	1/1:125:0,122,3:0:0:122,3:4355,108:-391.766,-36.7257,0,-382.953,-27.5536,-382.05	1/1:194:1,192,0:1:36:192,0:6826,0:-610.815,-54.8603,0,-611.116,-57.7978,-614.053	1/1:122:0,120,0:0:0:120,0:4262,0:-383.401,-36.1236,0,-383.401,-36.1236,-383.401	1/1:185:0,183,2:0:0:183,2:6529,71:-587.339,-55.0885,0,-581.554,-48.9485,-580.952	1/2:5:0,2,3:0:0:2,3:72,103:-14.588,-8.70651,-8.10445,-6.23466,0,-5.33157	1/1:123:0,123,0:0:0:123,0:4382,0:-394.554,-37.0267,0,-394.554,-37.0267,-394.554	1/2:163:0,86,76:0:0:86,76:3072,2606:-462.023,-211.552,-185.663,-250.461,0,-227.582	1/1:229:0,227,2:0:0:227,2:8061,67:-725.178,-68.3338,0,-719.753,-62.573,-719.151	1/1:119:0,119,0:0:0:119,0:4210,0:-379.084,-35.8226,0,-379.084,-35.8226,-379.084	1/1:68:0,68,0:0:0:68,0:2415,0:-217.606,-20.47,0,-217.606,-20.47,-217.606	1/2:121:0,50,71:0:0:50,71:1762,2487:-346.172,-202.713,-187.662,-143.81,0,-122.437	1/1:201:0,200,1:0:0:200,1:7108,34:-639.443,-60.206,0,-636.685,-57.1081,-636.384	1/1:56:0,56,0:0:0:56,0:1983,0:-178.744,-16.8577,0,-178.744,-16.8577,-178.744	1/2:96:0,45,50:0:0:45,50:1604,1717:-270.154,-139.401,-125.854,-130.744,0,-115.693	1/1:85:0,85,0:0:0:85,0:3000,0:-270.232,-25.5876,0,-270.232,-25.5876,-270.232	1/2:25:0,8,16:0:0:8,16:280,569:-69.1555,-46.3759,-43.9677,-22.7812,0,-17.9647	1/2:67:0,39,28:0:0:39,28:1373,971:-191.049,-79.2712,-67.531,-112.126,0,-103.698	1/2:87:0,29,58:0:0:29,58:1031,2049:-251.242,-167.223,-158.494,-84.3727,0,-66.913	1/1:164:0,163,0:0:0:163,0:5818,0:-523.483,-49.0679,0,-523.483,-49.0679,-523.483	1/1:140:0,140,0:0:0:140,0:4968,0:-447.271,-42.1442,0,-447.271,-42.1442,-447.271
chr08	1825568	.	T	C	191437	PASS	AB=0.519509;ABP=16.482;AC=148;AF=0.795699;AN=186;AO=8751;CIGAR=1X;DP=10731;DPB=10731;DPRA=58.9396;EPP=18745.9;EPPR=4265.65;GTI=3;LEN=1;MEANALT=1.05495;MQM=59.9814;MQMR=59.8997;NS=93;NUMALT=1;ODDS=2.51887;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313157;QR=70524;RO=1975;RPL=8721;RPP=18745.9;RPPR=4274.31;RPR=30;RUN=1;SAF=0;SAP=19005.6;SAR=8751;SRF=1;SRP=4282.99;SRR=1974;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	1/1:208:0,208:0:0:208:7445:-670.093,-62.6142,0	0/1:139:68,71:68:2398:71:2539:-186.918,0,-174.231	1/1:229:0,228:0:0:228:8155:-733.604,-68.6348,0	0/1:92:44,48:44:1572:48:1724:-127.751,0,-114.077	0/1:87:37,50:37:1328:50:1800:-136.093,0,-93.6326	1/1:143:0,143:0:0:143:5135:-462.29,-43.0473,0	1/1:235:0,234:0:0:234:8343:-750.23,-70.441,0	1/1:79:0,79:0:0:79:2805:-252.69,-23.7814,0	1/1:156:0,156:0:0:156:5603:-504.39,-46.9607,0	1/1:55:0,55:0:0:55:1958:-176.495,-16.5567,0	1/1:90:0,90:0:0:90:3220:-290.023,-27.0927,0	1/1:74:1,73:1:36:73:2628:-233.168,-18.6779,0	1/1:50:0,49:0:0:49:1739:-156.163,-14.7505,0	1/1:99:0,99:0:0:99:3555:-320.157,-29.802,0	1/1:59:0,59:0:0:59:2096:-188.907,-17.7608,0	1/1:62:0,62:0:0:62:2223:-200.333,-18.6639,0	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:259:0,259:0:0:259:9277:-834.896,-77.9668,0	1/1:136:0,136:0:0:136:4872:-438.633,-40.9401,0	0/1:137:70,67:70:2516:67:2402:-175.196,0,-185.449	1/1:156:0,156:0:0:156:5572:-501.602,-46.9607,0	0/1:165:66,99:66:2364:99:3557:-270.667,0,-163.219	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/1:382:188,194:188:6729:194:6964:-511.829,0,-490.531	0/1:192:67,125:67:2400:125:4492:-346.649,0,-158.458	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:286:0,286:0:0:286:10214:-919.188,-86.0946,0	1/1:186:1,185:1:36:185:6628:-593,-52.3933,0	0/1:111:58,53:58:2080:53:1904:-138.223,0,-153.97	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:220:0,220:0:0:220:7884:-709.582,-66.2266,0	0/1:262:149,113:149:5314:113:4056:-286.356,0,-399.51	0/1:70:38,32:38:1364:32:1135:-81.386,0,-101.989	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:166:92,74:92:3284:74:2621:-186.166,0,-245.768	0/1:32:18,14:18:648:14:500:-35.7032,0,-49.0189	0/1:269:126,143:126:4532:143:5114:-379.425,0,-327.068	0/1:99:47,52:47:1692:52:1851:-137.066,0,-122.765	1/1:96:0,96:0:0:96:3439:-309.723,-28.8989,0	0/1:80:37,43:37:1324:43:1536:-114.451,0,-95.3797	0/1:140:75,65:75:2684:65:2336:-168.355,0,-199.66	0/1:230:104,126:104:3702:126:4500:-335.93,0,-264.139	1/1:141:1,140:1:36:140:5016:-447.967,-38.847,0	1/1:191:0,191:0:0:191:6820:-613.87,-57.4967,0	1/1:156:0,155:0:0:155:5556:-499.803,-46.6597,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:138:57,81:57:2033:81:2900:-219.694,0,-141.681	0/1:56:14,42:14:504:42:1508:-119.157,0,-28.8381	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:151:67,84:67:2393:84:3001:-224.851,0,-170.17	0/1:44:18,26:18:640:26:928:-70.5929,0,-44.684	.:.:.:.:.:.:.:.	0/1:17:10,7:10:337:7:252:-17.9114,0,-25.5372	1/1:70:0,70:0:0:70:2512:-226.328,-21.0721,0	1/1:139:1,138:1:36:138:4933:-440.519,-38.2449,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:262:91,171:91:3197:171:6124:-472.39,0,-208.806	1/1:338:0,337:0:0:337:12043:-1083.36,-101.447,0	1/1:68:0,68:0:0:68:2405:-216.706,-20.47,0	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	1/1:188:1,187:1:36:187:6711:-600.462,-52.9954,0	0/1:129:81,48:81:2870:48:1692:-113.73,0,-219.145	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:65:1,64:1:36:64:2284:-202.224,-15.9687,0	1/1:96:0,96:0:0:96:3433:-309.182,-28.8989,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	0/1:39:27,12:27:972:12:419:-26.3013,0,-76.0577	1/1:131:3,128:3:108:128:4565:-400.941,-29.3598,0	1/1:197:0,197:0:0:197:7061:-635.548,-59.3029,0	1/1:129:0,129:0:0:129:4597:-413.895,-38.8329,0	1/1:186:2,184:2:68:184:6577:-585.554,-49.5339,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:125:0,125:0:0:125:4500:-405.166,-37.6288,0	0/1:167:77,90:77:2752:90:3211:-238.941,0,-197.642	1/1:233:2,231:2:72:231:8284:-738.731,-63.3033,0	1/1:122:0,122:0:0:122:4380:-394.372,-36.7257,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	0/1:122:71,51:71:2522:51:1828:-128.075,0,-190.503	1/1:205:0,205:0:0:205:7346:-661.187,-61.7112,0	1/1:57:0,57:0:0:57:2039:-183.781,-17.1587,0	0/1:97:51,46:51:1828:46:1647:-119.318,0,-135.601	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	0/1:25:17,8:17:608:8:288:-18.7417,0,-47.5263	0/1:66:27,39:27:972:39:1404:-106.791,0,-67.9299	0/1:90:60,30:60:2141:30:1072:-69.6998,0,-165.863	1/1:169:0,169:0:0:169:6034:-543.163,-50.8741,0	1/1:141:0,141:0:0:141:5040:-453.744,-42.4452,0
chr08	1915714	.	T	C	8309.7	PASS	AB=0.441345;ABP=39.4372;AC=33;AF=0.175532;AN=188;AO=544;CIGAR=1X;DP=3404;DPB=3404;DPRA=1.03327;EPP=1184.29;EPPR=6107.39;GTI=1;LEN=1;MEANALT=1.07895;MQM=60;MQMR=59.9863;NS=94;NUMALT=1;ODDS=0.0702729;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=19417;QR=101226;RO=2855;RPL=0;RPP=1184.29;RPPR=6107.39;RPR=544;RUN=1;SAF=544;SAP=1184.29;SAR=0;SRF=2855;SRP=6202.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3312	0/1:64:32,32:32:1136:32:1140:-83.6433,0,-83.283	0/0:111:111,0:111:3938:0:0:0,-33.4143,-354.614	0/0:16:14,1:14:496:1:36:0,-1.23314,-41.4144	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:31:31,0:31:1081:0:0:0,-9.33193,-97.5966	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/0:34:34,0:34:1198:0:0:0,-10.235,-108.124	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:81:80,1:80:2848:1:36:0,-20.7852,-252.961	0/0:54:54,0:54:1905:0:0:0,-16.2556,-171.726	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:140:84,56:84:2975:56:2008:-138.849,0,-225.84	0/1:79:56,22:56:1982:22:776:-46.3314,0,-154.823	0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8427	0/0:149:149,0:149:5277:0:0:0,-44.8535,-475.068	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:27:14,13:14:496:13:464:-33.9697,0,-36.8465	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:7:6,0:6:216:0:0:0,-1.80618,-19.5422	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:83:83,0:83:2939:0:0:0,-24.9855,-264.743	0/1:49:28,21:28:1000:21:756:-53.6168,0,-75.5649	0/1:18:12,6:12:432:6:208:-13.6405,0,-33.8027	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:56:27,29:27:960:29:1035:-76.6054,0,-69.8586	0/1:16:9,7:9:316:7:252:-18.2125,0,-23.9624	0/1:39:26,13:26:887:13:464:-30.3573,0,-68.3984	0/1:10:7,3:7:248:3:104:-6.69251,0,-19.6539	0/0:18:17,1:17:608:1:36:0,-1.82026,-51.4537	0/1:37:17,20:17:612:20:716:-53.6296,0,-44.2753	0/1:19:12,7:12:432:7:244:-16.5799,0,-33.5016	0/1:53:35,18:35:1252:18:636:-41.6129,0,-97.0305	0/0:35:35,0:35:1236:0:0:0,-10.536,-111.544	0/0:79:78,0:78:2778:0:0:0,-23.4803,-249.901	0/0:73:73,0:73:2592:0:0:0,-21.9752,-233.53	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:83:41,42:41:1448:42:1508:-111.029,0,-105.63	0/1:20:8,12:8:288:12:424:-32.4758,0,-20.2468	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:54:23,30:23:798:30:1063:-79.6666,0,-55.8227	0/0:20:19,1:19:680:1:36:0,-2.42232,-57.9309	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:100:49,51:49:1721:51:1819:-133.888,0,-125.07	0/0:49:49,0:49:1681:0:0:0,-14.7505,-151.571	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:44:44,0:44:1545:0:0:0,-13.2453,-139.34	0/0:49:47,2:47:1655:2:72:0,-7.91375,-142.4	0/1:85:49,36:49:1752:36:1288:-90.636,0,-132.377	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/1:39:18,21:18:635:21:752:-56.2661,0,-45.7368	0/0:50:50,0:50:1775:0:0:0,-15.0515,-159.715	0/0:72:72,0:72:2536:0:0:0,-21.6742,-228.493	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/0:37:37,0:37:1308:0:0:0,-11.1381,-118.022	0/1:48:28,20:28:989:20:712:-49.9572,0,-74.8726	0/0:60:60,0:60:2096:0:0:0,-18.0618,-188.908	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/0:23:23,0:23:808:0:0:0,-6.92369,-73.0401	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/0:37:37,0:37:1303:0:0:0,-11.1381,-117.571	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:24:12,12:12:428:12:428:-31.6341,0,-31.6341	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:12:10,2:10:352:2:72:-3.22436,0,-28.4058	0/1:36:12,24:12:413:24:860:-66.8848,0,-26.6607	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	0/0:55:55,0:55:1954:0:0:0,-16.5566,-176.134	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178
chr08	1947431	.	TCA	TAA	16484.3	PASS	AB=0.492901;ABP=3.8736;AC=36;AF=0.191489;AN=188;AO=978;CIGAR=1M1X1M;DP=5138;DPB=5133;DPRA=1.0501;EPP=2066.34;EPPR=8828.48;GTI=1;LEN=1;MEANALT=1.375;MQM=58.2669;MQMR=59.9949;NS=94;NUMALT=1;ODDS=0.703787;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35025;QR=144682;RO=4132;RPL=971;RPP=2066.34;RPPR=8828.48;RPR=7;RUN=1;SAF=0;SAP=2126.71;SAR=978;SRF=0;SRP=8975.53;SRR=4132;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1425:0:0:0,-12.3422,-128.544	0/0:35:35,0:35:1223:0:0:0,-10.536,-110.371	0/1:133:40,89:40:1389:89:3183:-247.477,0,-86.1704	0/0:160:159,0:159:5570:0:0:0,-47.8638,-501.073	0/1:35:16,16:16:561:16:576:-42.1384,0,-40.8287	0/1:43:29,14:29:978:14:504:-32.7178,0,-75.3803	0/0:45:45,0:45:1580:0:0:0,-13.5463,-142.49	0/0:97:97,0:97:3384:0:0:0,-29.1999,-304.778	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:38:37,0:37:1301:0:0:0,-11.1381,-117.03	0/0:36:36,0:36:1247:0:0:0,-10.8371,-112.53	0/0:73:73,0:73:2540:0:0:0,-21.9752,-228.849	0/0:58:58,0:58:2045:0:0:0,-17.4597,-184.322	0/0:45:45,0:45:1563:0:0:0,-13.5463,-140.957	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.493	0/0:55:55,0:55:1923:0:0:0,-16.5566,-173.342	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3748	0/0:33:33,0:33:1166:0:0:0,-9.93399,-105.247	0/0:34:34,0:34:1190:0:0:0,-10.235,-107.403	0/0:42:42,0:42:1481:0:0:0,-12.6433,-133.583	0/0:76:76,0:76:2676:0:0:0,-22.8783,-241.086	0/1:48:22,26:22:770:26:928:-69.3578,0,-55.1706	0/0:85:85,0:85:2943:0:0:0,-25.5875,-265.103	0/1:35:22,13:22:749:13:460:-31.1532,0,-57.1867	0/0:31:31,0:31:1067:0:0:0,-9.33193,-96.3343	0/1:129:65,63:65:2280:63:2258:-163.722,0,-166.572	0/1:88:49,39:49:1726:39:1396:-99.3971,0,-129.132	0/0:18:18,0:18:623:0:0:0,-5.41854,-56.3915	0/0:76:76,0:76:2695:0:0:0,-22.8783,-242.794	0/0:93:92,1:92:3210:1:36:0,-24.3975,-285.524	0/1:61:33,27:33:1153:27:966:-68.6614,0,-85.677	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:17:17,0:17:576:0:0:0,-5.11751,-52.1587	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:1:1,0:1:31:0:0:0,-0.30103,-3.09945	0/0:22:22,0:22:740:0:0:0,-6.62266,-66.911	0/0:157:157,0:157:5531:0:0:0,-47.2617,-497.921	0/1:31:17,14:17:583:14:500:-35.9591,0,-43.4597	0/1:53:21,31:21:746:31:1116:-84.6912,0,-51.4523	0/0:1:1,0:1:28:0:0:0,-0.30103,-2.79973	0/1:93:46,46:46:1638:46:1648:-120.436,0,-119.67	0/1:30:19,11:19:669:11:396:-26.9284,0,-51.5045	0/1:65:43,22:43:1526:22:788:-51.6778,0,-118.066	0/1:48:26,22:26:929:22:792:-57.1412,0,-69.479	0/0:52:52,0:52:1805:0:0:0,-15.6536,-162.727	0/1:33:23,10:23:800:10:346:-21.4709,0,-62.3815	0/1:88:43,42:43:1515:42:1498:-109.107,0,-110.721	0/1:72:38,34:38:1344:34:1220:-88.3444,0,-99.5848	0/0:43:43,0:43:1512:0:0:0,-12.9443,-136.37	0/0:37:37,0:37:1308:0:0:0,-11.1381,-118.02	0/0:45:45,0:45:1560:0:0:0,-13.5463,-140.686	0/1:13:7,6:7:241:6:216:-15.8747,0,-18.112	0/1:78:25,51:25:881:51:1824:-141.091,0,-56.4124	0/1:35:10,25:10:358:25:892:-69.932,0,-22.0268	0/1:9:6,3:6:203:3:108:-7.3659,0,-15.892	0/1:84:47,36:47:1615:36:1292:-91.0207,0,-120.304	0/1:28:18,9:18:646:9:312:-19.5192,0,-49.9856	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:16:13,3:13:438:3:108:-5.25587,0,-34.9262	0/0:53:53,0:53:1834:0:0:0,-15.9546,-165.336	0/0:70:67,3:67:2359:3:108:0,-11.0438,-202.54	0/0:8:8,0:8:278:0:0:0,-2.40824,-25.3568	0/1:127:59,64:59:2070:64:2291:-168.773,0,-149.182	0/0:77:77,0:77:2684:0:0:0,-23.1793,-241.804	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8186	0/0:73:72,0:72:2522:0:0:0,-21.6742,-226.871	0/0:99:98,1:98:3417:1:36:0,-26.2037,-304.147	0/1:101:43,58:43:1487:58:2084:-157.246,0,-103.715	0/0:14:13,1:13:466:1:36:0,-0.616145,-38.6804	0/0:29:29,0:29:1003:0:0:0,-8.72987,-90.5784	0/0:29:29,0:29:1007:0:0:0,-8.72987,-90.9395	0/0:20:20,0:20:710:0:0:0,-6.0206,-64.2265	0/0:61:61,0:61:2125:0:0:0,-18.3628,-191.518	0/1:33:17,16:17:594:16:576:-42.241,0,-43.853	0/0:64:64,0:64:2263:0:0:0,-19.2659,-203.932	0/0:90:90,0:90:3205:0:0:0,-27.0927,-288.673	0/0:92:92,0:92:3183:0:0:0,-27.6948,-286.697	0/0:71:71,0:71:2457:0:0:0,-21.3731,-221.382	0/1:16:14,2:14:489:2:72:-2.02024,0,-39.5241	0/0:78:78,0:78:2707:0:0:0,-23.4803,-243.875	0/1:59:32,27:32:1113:27:963:-68.882,0,-82.7144	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.223	0/0:47:47,0:47:1630:0:0:0,-14.1484,-146.984	0/0:48:48,0:48:1694:0:0:0,-14.4494,-152.744	0/1:57:22,35:22:788:35:1260:-96.2074,0,-54.0863	0/0:95:95,0:95:3352:0:0:0,-28.5978,-301.899	0/0:15:15,0:15:522:0:0:0,-4.51545,-47.3073	0/1:53:30,23:30:1061:23:824:-58.3718,0,-79.8456	0/0:52:52,0:52:1826:0:0:0,-15.6536,-164.62	0/1:29:10,19:10:358:19:684:-53.0704,0,-23.833	0/1:70:41,29:41:1437:29:1044:-73.1128,0,-108.552	0/1:60:21,38:21:732:38:1364:-104.803,0,-48.0815	0/0:143:143,0:143:5003:0:0:0,-43.0473,-450.425	0/0:88:86,0:86:3037:0:0:0,-25.8886,-273.2
chr08	1947437	.	C	A	16629.3	PASS	AB=0.508979;ABP=4.37513;AC=36;AF=0.191489;AN=188;AO=998;CIGAR=1X;DP=5057;DPB=5057;DPRA=1.03038;EPP=2170.14;EPPR=8788.81;GTI=0;LEN=1;MEANALT=1.02439;MQM=58.0671;MQMR=59.9963;NS=94;NUMALT=1;ODDS=0.94707;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35752;QR=145172;RO=4058;RPL=998;RPP=2170.14;RPPR=8788.81;RPR=0;RUN=1;SAF=0;SAP=2170.14;SAR=998;SRF=0;SRP=8814.85;SRR=4058;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:128:37,91:37:1305:91:3245:-253.625,0,-79.2176	0/0:153:153,0:153:5484:0:0:0,-46.0576,-493.686	0/1:35:16,19:16:546:19:680:-50.9067,0,-38.9232	0/1:42:28,14:28:974:14:504:-33.0189,0,-75.3249	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.78	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:71:71,0:71:2515:0:0:0,-21.3731,-226.596	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.772	0/1:46:22,24:22:792:24:864:-64.2124,0,-57.7583	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.961	0/1:33:20,13:20:720:13:468:-32.4796,0,-55.1948	0/0:30:29,1:29:1040:1:36:0,-5.43262,-90.3161	0/1:128:64,64:64:2281:64:2304:-168.109,0,-167.018	0/1:86:48,38:48:1715:38:1360:-96.8056,0,-128.745	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:93:92,1:92:3278:1:36:0,-24.3975,-291.639	0/1:60:32,28:32:1152:28:1008:-72.5154,0,-85.9283	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:11:4,7:4:144:7:252:-19.6101,0,-10.0023	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:155:155,0:155:5550:0:0:0,-46.6596,-499.622	0/1:31:17,14:17:608:14:504:-36.321,0,-45.7201	0/1:52:20,32:20:716:32:1148:-87.9173,0,-49.1142	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:92:45,47:45:1616:47:1675:-123.049,0,-118.035	0/1:30:19,11:19:680:11:396:-26.9284,0,-52.4983	0/1:65:43,22:43:1544:22:792:-52.0387,0,-119.686	0/1:47:26,21:26:928:21:752:-53.8431,0,-69.6898	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/1:34:23,11:23:824:11:386:-24.772,0,-64.2483	0/1:86:43,43:43:1540:43:1544:-113.126,0,-113.004	0/1:73:37,35:37:1316:35:1252:-91.0105,0,-96.857	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:14:7,7:7:252:7:252:-18.7666,0,-18.8145	0/1:78:25,53:25:900:53:1900:-147.58,0,-57.8407	0/1:35:10,25:10:360:25:900:-70.6522,0,-22.2083	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:83:46,37:46:1633:37:1327:-94.3923,0,-122.271	0/1:28:18,10:18:639:10:360:-23.3754,0,-49.4094	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:16:13,3:13:468:3:108:-5.25587,0,-37.6432	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:68:66,2:66:2372:2:72:0,-13.681,-206.949	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:125:57,68:57:2044:68:2436:-181.55,0,-146.603	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.651	0/0:96:96,0:96:3437:0:0:0,-28.8989,-309.541	0/1:101:43,58:43:1544:58:2066:-155.688,0,-108.849	0/0:13:12,1:12:432:1:36:0,-0.315115,-35.6229	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:32:16,16:16:572:16:576:-42.542,0,-42.1805	0/0:64:64,0:64:2262:0:0:0,-19.2659,-203.84	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:90:89,1:89:3169:1:36:0,-23.4944,-281.836	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/1:15:13,2:13:459:2:72:-2.32127,0,-37.1286	0/0:77:77,0:77:2753:0:0:0,-23.1793,-248.01	0/1:59:32,27:32:1152:27:959:-67.9908,0,-86.2294	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:57:22,35:22:792:35:1260:-96.209,0,-54.447	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:52:29,23:29:1044:23:820:-58.3121,0,-78.6212	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:28:9,19:9:324:19:684:-53.3714,0,-21.077	0/1:71:41,30:41:1476:30:1062:-74.4269,0,-111.763	0/1:58:19,39:19:680:39:1404:-109.016,0,-44.0694	0/0:139:139,0:139:4966:0:0:0,-41.8432,-447.086	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265
chr08	1947444	.	A	C,T	110794	PASS	AB=0.489796,0.510204;ABP=4.78293,4.78293;AC=152,36;AF=0.808511,0.191489;AN=188;AO=4068,1005;CIGAR=1X,1X;DP=5073;DPB=5073;DPRA=0,1.11262;EPP=8836.56,2185.34;EPPR=0;GTI=0;LEN=1,1;MEANALT=1.42553,2;MQM=59.9963,57.9861;MQMR=0;NS=94;NUMALT=2;ODDS=0.40476;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=145107,36028;QR=0;RO=0;RPL=4068,1005;RPP=8836.56,2185.34;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8836.56,2185.34;SAR=4068,1005;SRF=0;SRP=0;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41,0:0:0:41,0:1449,0:-130.704,-12.3422,0,-130.704,-12.3422,-130.704	1/1:35:0,35,0:0:0:35,0:1229,0:-110.912,-10.5361,0,-110.912,-10.5361,-110.912	1/2:133:0,39,94:0:0:39,94:1380,3365:-386.995,-274.592,-262.851,-112.759,0,-84.4618	1/1:157:0,156,1:0:0:156,1:5581,36:-502.052,-46.9607,0,-499.114,-43.6634,-498.813	1/2:35:0,16,19:0:0:16,19:568,684:-102.363,-56.0844,-51.2679,-46.6354,0,-40.9158	1/2:42:0,28,14:0:0:28,14:985,500:-121.263,-41.0858,-32.6569,-80.5327,0,-76.3183	1/1:45:0,45,0:0:0:45,0:1605,0:-144.738,-13.5464,0,-144.738,-13.5464,-144.738	1/1:96:0,96,0:0:0:96,0:3436,0:-309.453,-28.8989,0,-309.453,-28.8989,-309.453	1/1:48:0,48,0:0:0:48,0:1704,0:-153.644,-14.4494,0,-153.644,-14.4494,-153.644	1/1:36:0,36,0:0:0:36,0:1288,0:-116.224,-10.8371,0,-116.224,-10.8371,-116.224	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/1:71:0,71,0:0:0:71,0:2500,0:-225.248,-21.3731,0,-225.248,-21.3731,-225.248	1/1:58:0,58,0:0:0:58,0:2069,0:-186.479,-17.4597,0,-186.479,-17.4597,-186.479	1/1:44:0,44,0:0:0:44,0:1576,0:-142.132,-13.2453,0,-142.132,-13.2453,-142.132	1/1:50:0,50,0:0:0:50,0:1782,0:-160.663,-15.0515,0,-160.663,-15.0515,-160.663	1/1:54:0,54,0:0:0:54,0:1940,0:-174.876,-16.2556,0,-174.876,-16.2556,-174.876	1/1:24:0,24,0:0:0:24,0:848,0:-76.6377,-7.22472,0,-76.6377,-7.22472,-76.6377	1/1:33:0,33,0:0:0:33,0:1180,0:-106.508,-9.93399,0,-106.508,-9.93399,-106.508	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/1:73:0,73,0:0:0:73,0:2620,0:-236.047,-21.9752,0,-236.047,-21.9752,-236.047	1/2:47:0,21,26:0:0:21,26:741,932:-136.676,-76.3408,-70.0192,-60.69,0,-52.8632	1/1:84:0,84,0:0:0:84,0:2970,0:-267.531,-25.2865,0,-267.531,-25.2865,-267.531	1/2:34:0,21,13:0:0:21,13:756,468:-100.186,-38.5002,-32.1785,-62.0456,0,-58.1322	1/1:30:0,30,0:0:0:30,0:1065,0:-96.1598,-9.0309,0,-96.1598,-9.0309,-96.1598	1/2:129:0,65,64:0:0:65,64:2321,2304:-376.599,-187.375,-167.808,-189.581,0,-170.316	1/2:86:0,47,39:0:0:47,39:1687,1400:-252.117,-114.508,-100.359,-137.968,0,-126.228	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:75:0,75,0:0:0:75,0:2692,0:-242.524,-22.5773,0,-242.524,-22.5773,-242.524	1/1:92:0,91,1:0:0:91,1:3228,36:-290.383,-27.3937,0,-287.445,-24.0965,-287.144	1/2:58:0,31,27:0:0:31,27:1112,968:-169.674,-78.9725,-69.6406,-91.0594,0,-82.9316	1/2:9:0,6,3:0:0:6,3:212,108:-26.4331,-9.17208,-7.3659,-17.6186,0,-16.7155	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:11:0,4,7:0:0:4,7:144,248:-32.2018,-20.4495,-19.2454,-12.1095,0,-10.0023	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:21:0,21,0:0:0:21,0:747,0:-67.5543,-6.32163,0,-67.5543,-6.32163,-67.5543	1/1:155:0,155,0:0:0:155,0:5536,0:-498.365,-46.6597,0,-498.365,-46.6597,-498.365	1/2:30:0,16,14:0:0:16,14:576,493:-87.4815,-40.4786,-35.6621,-47.3585,0,-43.1441	1/2:51:0,19,32:0:0:19,32:684,1152:-150.109,-94.2982,-88.5787,-56.1708,0,-46.5378	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:94:0,47,47:0:0:47,47:1688,1688:-275.466,-137.766,-123.618,-138.059,0,-123.91	1/2:30:0,19,11:0:0:19,11:684,396:-88.459,-32.6479,-26.9284,-56.1708,0,-52.8594	1/2:64:0,43,21:0:0:43,21:1544,752:-187.635,-61.6846,-48.7403,-126.309,0,-119.987	1/2:49:0,27,22:0:0:27,22:968,788:-143.559,-64.6074,-56.4796,-79.3096,0,-72.6869	1/1:49:0,49,0:0:0:49,0:1737,0:-156.613,-14.7505,0,-156.613,-14.7505,-156.613	1/2:33:0,22,11:0:0:22,11:762,392:-94.1207,-32.2004,-25.5778,-62.2724,0,-58.9611	1/2:86:0,41,45:0:0:41,45:1446,1601:-248.261,-130.525,-118.183,-118.09,0,-104.543	1/2:74:0,38,36:0:0:38,36:1364,1288:-216.07,-104.806,-93.367,-111.622,0,-100.784	1/1:40:0,40,0:0:0:40,0:1432,0:-129.178,-12.0412,0,-129.178,-12.0412,-129.178	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/1:43:0,43,0:0:0:43,0:1536,0:-138.533,-12.9443,0,-138.533,-12.9443,-138.533	1/2:14:0,7,7:0:0:7,7:252,252:-41.4361,-20.8738,-18.7666,-20.9217,0,-18.8145	1/2:79:0,26,53:0:0:26,53:928,1904:-231.148,-155.494,-147.667,-76.0115,0,-60.0569	1/2:35:0,10,25:0:0:10,25:360,896:-102.677,-73.3024,-70.2921,-29.734,0,-22.2083	1/2:9:0,6,3:0:0:6,3:216,108:-26.7966,-9.17208,-7.3659,-17.9843,0,-17.0812	1/2:81:0,44,37:0:0:44,37:1530,1331:-232.989,-108.6,-95.3545,-124.743,0,-113.604	1/2:28:0,18,10:0:0:18,10:644,356:-80.9795,-28.4574,-23.0389,-52.8721,0,-49.8618	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.9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chr08	1947450	.	C	T	16271.7	PASS	AB=0.50668;ABP=3.76462;AC=36;AF=0.191489;AN=188;AO=990;CIGAR=1X;DP=5071;DPB=5071;DPRA=1.0156;EPP=2152.77;EPPR=8860.45;GTI=1;LEN=1;MEANALT=1.02564;MQM=57.9889;MQMR=59.9968;NS=94;NUMALT=1;ODDS=0.0347359;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35210;QR=145722;RO=4079;RPL=990;RPP=2152.77;RPPR=8860.45;RPR=0;RUN=1;SAF=0;SAP=2152.77;SAR=990;SRF=0;SRP=8860.45;SRR=4079;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.784	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:129:37,92:37:1328:92:3235:-252.403,0,-80.9894	0/0:158:158,0:158:5661:0:0:0,-47.5627,-509.607	0/1:34:15,19:15:536:19:684:-51.5689,0,-38.3398	0/1:40:26,14:26:928:14:489:-32.2617,0,-71.7971	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.988	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:71:71,0:71:2524:0:0:0,-21.3731,-227.392	0/0:59:59,0:59:2102:0:0:0,-17.7608,-189.448	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.664	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/1:48:22,26:22:788:26:932:-69.7178,0,-56.7954	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/1:35:22,13:22:792:13:464:-31.5154,0,-61.0696	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/1:127:65,62:65:2328:62:2213:-160.226,0,-171.549	0/1:87:48,39:48:1728:39:1373:-97.6284,0,-129.615	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:75:75,0:75:2662:0:0:0,-22.5772,-239.823	0/0:93:92,1:92:3300:1:36:0,-24.3975,-293.62	0/1:60:32,28:32:1122:28:1000:-71.9153,0,-83.222	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:11:4,7:4:144:7:252:-19.6101,0,-10.0023	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:155:155,0:155:5555:0:0:0,-46.6596,-500.073	0/1:31:17,14:17:600:14:497:-35.723,0,-44.9973	0/1:53:21,32:21:756:32:1125:-85.5425,0,-52.4126	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:92:47,45:47:1688:45:1612:-117.383,0,-124.512	0/1:30:19,11:19:684:11:396:-26.9284,0,-52.8594	0/1:62:40,21:40:1425:21:756:-49.6446,0,-109.823	0/1:47:25,22:25:896:22:788:-57.0816,0,-66.8119	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:32:22,10:22:777:10:356:-22.6852,0,-60.6174	0/1:85:40,45:40:1440:45:1586:-117.208,0,-104.31	0/1:74:38,36:38:1368:36:1283:-93.1962,0,-101.145	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:45:45,0:45:1574:0:0:0,-13.5463,-141.946	0/1:14:7,7:7:252:7:252:-18.7666,0,-18.8145	0/1:78:26,52:26:932:52:1855:-143.594,0,-60.7185	0/1:34:10,24:10:360:24:860:-67.3555,0,-22.5093	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:82:46,36:46:1618:36:1250:-87.8458,0,-121.221	0/1:28:18,10:18:633:10:360:-23.3754,0,-48.8662	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:16:13,3:13:453:3:108:-5.25587,0,-36.2831	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/0:70:68,2:68:2425:2:72:0,-14.2831,-211.715	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:125:59,66:59:2116:66:2361:-174.802,0,-153.08	0/0:76:76,0:76:2702:0:0:0,-22.8783,-243.421	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:98:98,0:98:3490:0:0:0,-29.5009,-314.309	0/1:99:42,57:42:1512:57:2021:-152.206,0,-106.573	0/0:14:13,1:13:468:1:36:0,-0.616145,-38.8614	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.759	0/1:33:17,16:17:593:16:576:-42.241,0,-43.7607	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/0:91:91,0:91:3249:0:0:0,-27.3937,-292.63	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/1:16:14,2:14:500:2:72:-2.02024,0,-40.5197	0/0:77:77,0:77:2749:0:0:0,-23.1793,-247.651	0/1:59:32,27:32:1144:27:957:-67.789,0,-85.5087	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:47:47,0:47:1660:0:0:0,-14.1484,-149.685	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:58:22,36:22:792:36:1292:-98.785,0,-54.1459	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:52:30,22:30:1072:22:784:-55.0523,0,-81.1389	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:29:10,19:10:347:19:676:-52.3745,0,-22.8337	0/1:70:40,30:40:1421:30:1064:-74.9097,0,-107.113	0/1:58:21,37:21:743:37:1321:-101.589,0,-49.7336	0/0:141:140,0:140:5009:0:0:0,-42.1442,-450.596	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.897
chr08	1954705	.	G	C	103188	PASS	AB=0.480221;ABP=10.9988;AC=155;AF=0.824468;AN=188;AO=4856;CIGAR=1X;DP=6099;DPB=6099;DPRA=0;EPP=10539;EPPR=2678.26;GTI=1;LEN=1;MEANALT=1.10638;MQM=59.9977;MQMR=60;NS=94;NUMALT=1;ODDS=1.10406;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171940;QR=43402;RO=1232;RPL=1;RPP=10539;RPPR=2678.26;RPR=4855;RUN=1;SAF=0;SAP=10547.7;SAR=4856;SRF=0;SRP=2678.26;SRR=1232;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1203:-108.575,-10.235,0	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	0/1:156:86,70:86:3000:70:2488:-177.213,0,-223.266	1/1:95:0,95:0:0:95:3323:-299.288,-28.5979,0	0/1:46:20,26:20:697:26:923:-69.5394,0,-49.2033	0/1:30:13,17:13:464:17:603:-45.5686,0,-33.0666	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:129:0,128:0:0:128:4519:-406.52,-38.5318,0	1/1:87:0,87:0:0:87:3091:-278.419,-26.1896,0	1/1:58:0,58:0:0:58:2058:-185.491,-17.4597,0	1/1:47:0,47:0:0:47:1661:-149.776,-14.1484,0	1/1:87:0,87:0:0:87:3027:-272.664,-26.1896,0	1/1:80:0,80:0:0:80:2828:-254.759,-24.0824,0	1/1:75:1,74:1:36:74:2611:-231.641,-18.979,0	1/1:74:0,74:0:0:74:2604:-234.608,-22.2762,0	1/1:58:0,58:0:0:58:2046:-184.411,-17.4597,0	1/1:37:0,37:0:0:37:1312:-118.382,-11.1381,0	1/1:27:0,27:0:0:27:945:-85.3631,-8.12781,0	1/1:30:0,30:0:0:30:1038:-93.7251,-9.0309,0	1/1:91:0,90:0:0:90:3176:-285.705,-27.0927,0	1/1:83:0,81:0:0:81:2885:-259.526,-24.3834,0	0/1:54:40,14:40:1423:14:500:-29.0806,0,-112.111	1/1:62:2,60:2:72:60:2143:-186.3,-11.8271,0	0/1:26:10,16:10:351:16:567:-43.5339,0,-24.0999	1/1:62:0,62:0:0:62:2197:-197.994,-18.6639,0	0/1:192:97,95:97:3436:95:3370:-245.72,0,-251.656	0/1:139:72,67:72:2536:67:2368:-171.534,0,-186.647	1/1:28:0,28:0:0:28:988:-89.2339,-8.42884,0	1/1:121:1,120:1:36:120:4261:-380.071,-32.8264,0	1/1:90:6,84:6:216:84:2985:-249.091,-7.30219,0	0/1:67:40,27:40:1417:27:963:-66.8169,0,-107.656	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:145:0,145:0:0:145:5108:-459.868,-43.6494,0	0/1:68:38,29:38:1355:29:1028:-72.4492,0,-101.867	0/1:40:25,15:25:888:15:532:-36.1719,0,-68.1978	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:78:36,42:36:1274:42:1508:-112.534,0,-91.4811	0/1:32:22,10:22:771:10:352:-22.3852,0,-60.0773	0/1:151:78,73:78:2766:73:2566:-185.731,0,-203.726	0/1:53:33,20:33:1159:20:707:-48,0,-88.6613	1/1:46:0,46:0:0:46:1593:-143.656,-13.8474,0	0/1:76:36,39:36:1264:39:1404:-103.868,0,-91.2687	0/1:112:47,65:47:1638:65:2309:-174.354,0,-113.988	0/1:84:35,49:35:1239:49:1730:-130.697,0,-86.5271	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:57:0,57:0:0:57:2025:-182.521,-17.1587,0	1/1:122:0,121:0:0:121:4306:-387.358,-36.4246,0	0/1:13:8,5:8:269:5:176:-12.2716,0,-20.6227	0/1:101:36,65:36:1288:65:2310:-177.756,0,-85.8196	0/1:55:35,20:35:1229:20:696:-46.403,0,-94.355	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:77:40,37:40:1432:37:1292:-93.3989,0,-105.998	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:2,6:2:64:6:212:-17.0166,0,-3.67045	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:77:1,76:1:36:76:2672:-237.128,-19.581,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:120:53,67:53:1851:67:2369:-177.344,0,-130.743	1/1:190:0,188:0:0:188:6663:-599.391,-56.5936,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:42:0,42:0:0:42:1492:-134.575,-12.6433,0	1/1:116:0,116:0:0:116:4093:-368.554,-34.9195,0	0/1:123:79,43:79:2809:43:1523:-100.425,0,-216.115	1/1:41:1,40:1:36:40:1413:-123.867,-8.74396,0	1/1:37:0,37:0:0:37:1312:-118.382,-11.1381,0	1/1:42:0,42:0:0:42:1490:-134.393,-12.6433,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:133:0,133:0:0:133:4678:-421.184,-40.037,0	0/1:53:30,23:30:1045:23:805:-56.8129,0,-78.4032	1/1:127:0,127:0:0:127:4483:-403.643,-38.2308,0	1/1:87:0,87:0:0:87:3100:-279.229,-26.1896,0	1/1:96:0,96:0:0:96:3396:-305.853,-28.8989,0	1/1:58:0,58:0:0:58:2063:-185.941,-17.4597,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:60:1,59:1:36:59:2111:-186.66,-14.4635,0	0/1:91:45,46:45:1603:46:1618:-118.514,0,-117.166	1/1:137:0,137:0:0:137:4907:-441.78,-41.2411,0	1/1:45:0,45:0:0:45:1587:-143.12,-13.5464,0	1/1:53:0,53:0:0:53:1861:-167.766,-15.9546,0	0/1:26:17,9:17:565:9:323:-21.5883,0,-43.3353	1/1:85:1,84:1:36:84:2968:-263.756,-21.9893,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:56:30,26:30:1050:26:919:-66.1685,0,-77.9511	1/1:59:0,59:0:0:59:2086:-187.992,-17.7608,0	0/1:58:27,31:27:953:31:1096:-81.4902,0,-68.6236	0/1:100:46,53:46:1594:53:1892:-140.485,0,-113.672	0/1:54:37,17:37:1288:17:612:-39.1578,0,-99.9624	1/1:96:0,96:0:0:96:3393:-305.585,-28.8989,0	1/1:89:0,89:0:0:89:3167:-285.255,-26.7917,0
chr08	1966627	.	A	G	97804.2	PASS	AB=0.491511;ABP=4.44818;AC=155;AF=0.824468;AN=188;AO=4669;CIGAR=1X;DP=5851;DPB=5851;DPRA=0;EPP=10141.6;EPPR=2563.18;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.9698;MQMR=59.9983;NS=94;NUMALT=1;ODDS=0.0221164;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163910;QR=41967;RO=1179;RPL=0;RPP=10141.6;RPPR=2563.18;RPR=4669;RUN=1;SAF=0;SAP=10141.6;SAR=4669;SRF=0;SRP=2563.18;SRR=1179;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	1/1:34:0,34:0:0:34:1199:-108.215,-10.235,0	0/1:272:154,118:154:5464:118:4179:-294.413,0,-410.011	1/1:139:1,138:1:36:138:4819:-430.27,-38.2449,0	0/1:49:15,33:15:536:33:1188:-92.458,0,-33.8031	0/1:40:23,17:23:824:17:603:-42.5583,0,-62.4421	1/1:64:0,64:0:0:64:2237:-201.583,-19.2659,0	1/1:89:0,89:0:0:89:3128:-281.748,-26.7917,0	1/1:106:3,103:3:108:103:3613:-315.303,-21.834,0	1/1:66:0,66:0:0:66:2333:-210.229,-19.868,0	1/1:32:0,32:0:0:32:1131:-102.098,-9.63296,0	1/1:100:0,100:0:0:100:3478:-313.233,-30.103,0	1/1:52:0,52:0:0:52:1798:-162.098,-15.6536,0	1/1:30:0,30:0:0:30:1019:-92.0137,-9.0309,0	1/1:55:0,55:0:0:55:1911:-172.265,-16.5567,0	1/1:55:0,55:0:0:55:1947:-175.505,-16.5567,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:26:0,26:0:0:26:927:-83.7474,-7.82678,0	1/1:28:0,28:0:0:28:980:-88.5102,-8.42884,0	1/1:109:0,109:0:0:109:3875:-348.944,-32.8123,0	1/1:95:2,93:2:72:93:3260:-286.786,-21.7611,0	0/1:93:68,25:68:2429:25:896:-52.9646,0,-190.868	1/1:76:0,76:0:0:76:2673:-240.8,-22.8783,0	0/1:25:9,16:9:320:16:568:-43.9261,0,-21.6166	1/1:59:0,59:0:0:59:2091:-188.46,-17.7608,0	0/1:166:68,98:68:2417:98:3437:-259.572,0,-167.814	0/1:153:67,86:67:2399:86:3020:-225.972,0,-170.109	1/1:25:0,25:0:0:25:855:-77.2601,-7.52575,0	1/1:93:0,93:0:0:93:3277:-295.152,-27.9958,0	1/1:70:3,67:3:108:67:2369:-203.393,-10.9969,0	0/1:24:12,12:12:428:12:428:-31.6341,0,-31.6341	0/1:9:1,8:1:36:8:266:-21.5543,0,-0.889005	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:159:0,159:0:0:159:5532:-497.958,-47.8638,0	0/1:53:23,30:23:819:30:1051:-78.945,0,-58.077	0/1:54:32,22:32:1136:22:774:-53.7246,0,-86.2933	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:91:44,47:44:1580:47:1608:-117.604,0,-115.098	0/1:21:10,11:10:360:11:381:-28.299,0,-26.4227	0/1:71:29,42:29:1044:42:1500:-113.921,0,-72.9017	0/1:50:24,26:24:843:26:906:-66.802,0,-61.1365	1/1:46:0,46:0:0:46:1605:-144.737,-13.8474,0	0/1:58:20,38:20:696:38:1335:-102.989,0,-45.4999	0/1:76:43,33:43:1519:33:1163:-82.0978,0,-114.124	0/1:100:52,48:52:1842:48:1665:-120.029,0,-135.956	1/1:48:0,48:0:0:48:1696:-152.923,-14.4494,0	1/1:67:0,67:0:0:67:2390:-215.356,-20.169,0	1/1:51:0,51:0:0:51:1792:-161.56,-15.3525,0	0/1:16:10,6:10:347:6:212:-14.231,0,-26.7471	0/1:65:38,27:38:1351:27:955:-66.6979,0,-102.323	0/1:46:24,22:24:851:22:784:-57.0365,0,-63.0621	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:119:69,50:69:2463:50:1741:-121.147,0,-186.101	0/1:34:20,14:20:720:14:489:-34.1039,0,-54.8938	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:44:0,44:0:0:44:1521:-137.177,-13.2453,0	1/1:69:0,69:0:0:69:2397:-215.985,-20.7711,0	1/1:2:0,2:0:0:2:56:-5.31947,-0.60206,0	0/1:138:52,86:52:1859:86:3052:-233.209,0,-126.047	1/1:118:0,118:0:0:118:4171:-375.574,-35.5215,0	1/1:34:0,34:0:0:34:1194:-107.764,-10.235,0	1/1:108:0,108:0:0:108:3759:-338.504,-32.5112,0	1/1:144:0,144:0:0:144:5057:-455.279,-43.3483,0	0/1:118:75,43:75:2660:43:1536:-103.012,0,-204.123	1/1:18:0,18:0:0:18:627:-56.7544,-5.41854,0	1/1:48:0,48:0:0:48:1711:-154.275,-14.4494,0	1/1:29:0,29:0:0:29:1025:-92.5616,-8.72987,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:90:0,90:0:0:90:3161:-284.714,-27.0927,0	0/1:45:17,28:17:608:28:992:-76.048,0,-41.5057	1/1:71:0,71:0:0:71:2511:-226.243,-21.3731,0	1/1:81:0,81:0:0:81:2852:-256.916,-24.3834,0	1/1:113:0,113:0:0:113:3980:-358.389,-34.0164,0	1/1:40:0,40:0:0:40:1392:-125.574,-12.0412,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:73:1,72:1:36:72:2474:-219.311,-18.3769,0	0/1:74:31,43:31:1112:43:1518:-114.635,0,-78.1151	1/1:85:0,85:0:0:85:3004:-270.591,-25.5876,0	1/1:60:0,59:0:0:59:2090:-188.104,-17.7608,0	1/1:51:0,51:0:0:51:1803:-162.55,-15.3525,0	0/1:41:21,20:21:734:20:676:-48.811,0,-54.0382	1/1:115:2,113:2:72:113:3929:-346.949,-27.7817,0	1/1:28:0,28:0:0:28:986:-89.0522,-8.42884,0	0/1:50:32,18:32:1152:18:591:-38.4474,0,-88.9386	1/1:57:0,57:0:0:57:1971:-177.66,-17.1587,0	0/1:22:10,12:10:347:12:420:-31.5114,0,-24.941	0/1:65:38,27:38:1347:27:931:-64.5346,0,-101.963	0/1:52:30,22:30:1076:22:784:-55.2304,0,-81.4993	1/1:108:0,108:0:0:108:3795:-341.75,-32.5112,0	1/1:94:0,93:0:0:93:3274:-294.659,-27.9958,0
chr08	1981862	.	T	G	12774.6	PASS	AB=0.470068;ABP=17.9597;AC=28;AF=0.148936;AN=188;AO=961;CIGAR=1X;DP=10941;DPB=10941;DPRA=0.899524;EPP=2089.8;EPPR=21639.6;GTI=1;LEN=1;MEANALT=1.08333;MQM=40.7846;MQMR=57.8233;NS=94;NUMALT=1;ODDS=11.2878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34225;QR=356875;RO=9972;RPL=961;RPP=2089.8;RPPR=21639.6;RPR=0;RUN=1;SAF=961;SAP=2089.8;SAR=0;SRF=9972;SRP=21656.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.733	0/1:49:33,16:33:1184:16:576:-35.7196,0,-92.1097	0/0:104:104,0:104:3706:0:0:0,-31.3071,-332.533	0/1:33:14,19:14:504:19:665:-48.3994,0,-35.6922	0/1:41:22,19:22:788:19:684:-47.5257,0,-58.1228	0/0:70:70,0:70:2512:0:0:0,-21.0721,-225.784	0/0:138:138,0:138:4916:0:0:0,-41.5421,-442.212	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.962	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.707	0/0:159:158,0:158:5645:0:0:0,-47.5627,-506.991	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.46	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.571	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:24:23,0:23:820:0:0:0,-6.92369,-73.7232	0/0:35:35,0:35:1234:0:0:0,-10.536,-111.324	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.725	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.649	0/0:126:125,0:125:4440:0:0:0,-37.6287,-399.183	0/0:76:76,0:76:2732:0:0:0,-22.8783,-245.707	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.389	0/1:70:33,37:33:1180:37:1332:-95.1831,0,-85.2314	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.226	0/1:51:32,18:32:1133:18:644:-41.0524,0,-86.8357	0/0:69:69,0:69:2476:0:0:0,-20.7711,-222.986	0/1:231:114,117:114:4092:117:4212:-296.513,0,-298.227	0/1:159:97,62:97:3480:62:2220:-145.809,0,-265.332	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/0:172:172,0:172:6172:0:0:0,-51.7772,-554.883	0/0:90:89,1:89:3192:1:36:0,-23.612,-283.909	0/1:62:29,33:29:1040:33:1180:-83.6784,0,-74.9824	0/0:571:564,7:564:20204:7:252:0,-149.612,-1794.79	0/0:482:482,0:482:17232:0:0:0,-145.096,-1549.57	0/0:312:312,0:312:11157:0:0:0,-93.9214,-1003.75	0/0:992:991,0:991:35469:0:0:0,-298.321,-3189.63	0/0:376:376,0:376:13495:0:0:0,-113.187,-1213.45	0/0:98:98,0:98:3515:0:0:0,-29.5009,-315.637	0/1:110:62,48:62:2228:48:1716:-116.711,0,-167.635	0/0:133:123,10:123:4358:10:360:0,-8.36266,-360.685	0/0:249:249,0:249:8923:0:0:0,-74.9565,-802.857	0/1:57:21,36:21:756:36:1292:-93.2875,0,-50.837	0/1:70:61,9:61:2153:9:320:-7.16697,0,-172.928	0/1:70:49,21:49:1764:21:752:-44.3639,0,-137.942	0/1:42:23,19:23:824:19:680:-46.3094,0,-61.7646	0/0:38:38,0:38:1346:0:0:0,-11.4391,-121.339	0/1:115:63,52:63:2268:52:1849:-126,0,-169.342	0/1:71:55,16:55:1980:16:576:-29.097,0,-157.101	0/1:114:69,45:69:2472:45:1611:-105.556,0,-188.181	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.561	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.779	0/0:99:99,0:99:3543:0:0:0,-29.802,-318.231	0/0:143:139,4:139:4992:4:144:0,-30.1687,-435.971	0/1:55:27,28:27:963:28:993:-69.2294,0,-70.1264	0/1:29:17,12:17:608:12:428:-28.928,0,-46.1639	0/0:435:421,13:421:15078:13:468:0,-89.928,-1315.18	0/1:50:24,26:24:855:26:909:-64.4112,0,-62.2187	0/1:33:16,17:16:563:17:612:-43.6687,0,-41.0334	0/0:364:364,0:364:13020:0:0:0,-109.575,-1168.6	0/0:352:349,3:349:12481:3:108:0,-96.2166,-1110.04	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.543	0/0:51:51,0:51:1832:0:0:0,-15.3525,-164.87	0/0:420:419,0:419:14995:0:0:0,-126.132,-1346.46	0/1:90:21,68:21:756:68:2412:-183.378,0,-41.1575	0/0:139:139,0:139:4988:0:0:0,-41.8432,-447.684	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.203	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.043	0/0:141:141,0:141:5039:0:0:0,-42.4452,-453.105	0/1:36:13,23:13:468:23:824:-61.261,0,-31.5919	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.286	0/0:46:46,0:46:1631:0:0:0,-13.8474,-146.997	0/0:54:54,0:54:1944:0:0:0,-16.2556,-174.621	0/0:322:322,0:322:11547:0:0:0,-96.9317,-1037.71	0/0:93:93,0:93:3310:0:0:0,-27.9958,-297.853	0/1:43:23,20:23:819:20:705:-48.7358,0,-61.0156	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.048	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.515	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.756	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.82	0/0:183:170,13:170:6095:13:464:0,-14.3178,-507.752	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.849	0/1:37:21,16:21:756:16:531:-35.4822,0,-57.2291	0/0:122:122,0:122:4375:0:0:0,-36.7257,-393.483	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.456	0/0:33:33,0:33:1141:0:0:0,-9.93399,-102.842	0/1:64:28,36:28:995:36:1262:-91.0561,0,-70.455	0/0:103:103,0:103:3699:0:0:0,-31.0061,-332.891	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.2852	0/1:50:20,30:20:720:30:1050:-76.3996,0,-50.0765	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.138	0/0:92:85,7:85:3034:7:232:0,-7.153,-252.708	0/1:47:17,30:17:603:30:1046:-76.1563,0,-40.4511	0/1:42:12,30:12:428:30:1080:-81.6836,0,-26.1838	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7762	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.361
chr08	2020804	.	T	A	110060	PASS	AB=0.48834;ABP=5.59283;AC=151;AF=0.803191;AN=188;AO=5086;CIGAR=1X;DP=6218;DPB=6218;DPRA=33.4194;EPP=11047.1;EPPR=2461.12;GTI=1;LEN=1;MEANALT=1;MQM=58.233;MQMR=59.9664;NS=94;NUMALT=1;ODDS=4.93957;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181667;QR=40454;RO=1132;RPL=0;RPP=11047.1;RPPR=2461.12;RPR=5086;RUN=1;SAF=5086;SAP=11047.1;SAR=0;SRF=1132;SRP=2461.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1728:-155.522,-14.4494,0	1/1:74:0,74:0:0:74:2656:-238.588,-22.2762,0	0/1:85:36,49:36:1292:49:1760:-131.7,0,-90.9962	1/1:126:1,125:1:36:125:4477:-399.259,-34.3315,0	0/1:38:8,30:8:288:30:1057:-83.8136,0,-14.8283	0/1:33:13,20:13:464:20:720:-55.1669,0,-32.1635	1/1:106:0,106:0:0:106:3758:-338.17,-31.9092,0	1/1:89:0,89:0:0:89:3185:-286.594,-26.7917,0	1/1:76:0,76:0:0:76:2686:-241.063,-22.8783,0	1/1:56:0,56:0:0:56:2016:-181.404,-16.8577,0	1/1:58:0,58:0:0:58:2076:-186.328,-17.4597,0	1/1:92:1,91:1:36:91:3257:-289.413,-24.0965,0	1/1:73:0,73:0:0:73:2616:-235.425,-21.9752,0	1/1:89:0,89:0:0:89:3194:-287.524,-26.7917,0	1/1:50:0,50:0:0:50:1788:-161.127,-15.0515,0	1/1:57:0,57:0:0:57:2052:-184.331,-17.1587,0	1/1:30:0,30:0:0:30:1068:-96.32,-9.0309,0	1/1:29:0,29:0:0:29:1036:-93.2552,-8.72987,0	1/1:31:0,31:0:0:31:1116:-100.582,-9.33193,0	1/1:90:0,90:0:0:90:3202:-288.317,-27.0927,0	1/1:73:0,73:0:0:73:2616:-235.004,-21.9752,0	0/1:82:51,31:51:1828:31:1108:-75.0762,0,-140.116	1/1:99:0,99:0:0:99:3552:-318.498,-29.802,0	0/1:24:7,17:7:252:17:608:-47.2629,0,-15.8042	1/1:64:0,64:0:0:64:2299:-207.03,-19.2659,0	0/1:119:63,56:63:2241:56:2012:-145.496,0,-166.128	0/1:138:86,52:86:3092:52:1845:-123.861,0,-236.965	1/1:26:0,26:0:0:26:928:-83.7686,-7.82678,0	1/1:113:0,113:0:0:113:4025:-362.32,-34.0164,0	1/1:95:2,93:2:72:93:3314:-291.451,-21.7611,0	0/1:97:52,45:52:1860:45:1597:-114.75,0,-138.48	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	1/1:19:0,19:0:0:19:684:-61.8125,-5.71957,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:9:0,9:0:0:9:309:-28.1303,-2.70927,0	1/1:25:0,25:0:0:25:896:-80.7039,-7.52575,0	1/1:133:0,133:0:0:133:4776:-429.595,-40.037,0	0/1:73:33,40:33:1184:40:1432:-106.585,0,-84.8931	0/1:51:22,29:22:792:29:1044:-78.826,0,-56.2531	1/1:3:0,3:0:0:3:108:-10.0742,-0.90309,0	0/1:45:20,25:20:720:25:896:-66.6843,0,-51.5824	0/1:22:12,10:12:432:10:360:-26.0754,0,-32.5985	0/1:97:54,43:54:1929:43:1512:-107.101,0,-144.68	0/1:41:23,18:23:828:18:644:-45.9475,0,-62.5019	1/1:47:0,47:0:0:47:1684:-151.813,-14.1484,0	0/1:64:43,21:43:1521:21:741:-47.7202,0,-117.915	0/1:74:45,29:45:1601:29:1025:-70.2517,0,-122.102	0/1:118:56,62:56:2008:62:2213:-163.239,0,-145.472	1/1:75:0,75:0:0:75:2662:-238.016,-22.5773,0	1/1:58:0,58:0:0:58:2069:-185.075,-17.4597,0	1/1:144:0,144:0:0:144:5129:-461.012,-43.3483,0	0/1:5:2,3:2:72:3:108:-8.5696,0,-5.33157	0/1:88:36,52:36:1296:52:1844:-139.078,0,-90.4533	0/1:37:18,19:18:648:19:680:-50.3911,0,-47.5138	0/1:7:4,3:4:144:3:108:-7.89397,0,-11.2064	0/1:88:46,42:46:1644:42:1500:-108.105,0,-121.758	0/1:20:5,15:5:180:15:521:-41.1588,0,-10.5315	1/1:17:0,17:0:0:17:574:-51.9582,-5.11751,0	0/1:10:7,3:7:244:3:108:-7.06487,0,-19.2891	1/1:101:0,101:0:0:101:3597:-323.259,-30.404,0	1/1:88:0,88:0:0:88:3153:-283.702,-26.4906,0	1/1:14:0,14:0:0:14:498:-45.0267,-4.21442,0	0/1:80:36,44:36:1281:44:1565:-117.048,0,-91.5089	1/1:70:0,70:0:0:70:2500:-224.54,-21.0721,0	1/1:81:0,81:0:0:81:2904:-261.154,-24.3834,0	1/1:36:0,36:0:0:36:1266:-113.81,-10.8371,0	1/1:126:0,126:0:0:126:4486:-402.56,-37.9298,0	0/1:105:75,30:75:2662:30:1071:-64.9551,0,-208.129	1/1:48:0,48:0:0:48:1716:-154.539,-14.4494,0	1/1:65:0,65:0:0:65:2328:-209.534,-19.567,0	1/1:46:0,46:0:0:46:1656:-149.287,-13.8474,0	1/1:27:0,27:0:0:27:968:-87.3973,-8.12781,0	1/1:133:0,133:0:0:133:4772:-428.615,-40.037,0	0/1:95:40,55:40:1425:55:1972:-149.089,0,-99.9476	1/1:147:0,147:0:0:147:5242:-470.267,-44.2514,0	1/1:79:0,79:0:0:79:2821:-254.025,-23.7814,0	1/1:77:0,77:0:0:77:2745:-247.027,-23.1793,0	1/1:79:2,77:2:72:77:2760:-241.375,-16.9446,0	0/1:9:5,4:5:180:4:144:-10.5446,0,-13.8428	1/1:63:0,63:0:0:63:2264:-203.4,-18.9649,0	0/1:81:53,28:53:1891:28:974:-63.4785,0,-146.084	1/1:107:0,107:0:0:107:3832:-344.074,-32.2102,0	1/1:42:0,42:0:0:42:1489:-134.167,-12.6433,0	1/1:79:0,79:0:0:79:2832:-254.973,-23.7814,0	0/1:31:16,15:16:561:15:540:-39.6037,0,-41.4852	1/1:103:0,103:0:0:103:3704:-333.331,-31.0061,0	1/1:19:0,19:0:0:19:680:-61.5036,-5.71957,0	0/1:60:29,31:29:1044:31:1093:-80.5798,0,-76.2084	1/1:72:0,72:0:0:72:2573:-231.234,-21.6742,0	0/1:59:24,35:24:860:35:1244:-94.4361,0,-59.9611	0/1:139:65,74:65:2313:74:2641:-195.882,0,-166.586	0/1:58:29,29:29:1044:29:1025:-75.0725,0,-76.8151	1/1:65:5,60:5:165:60:2145:-177.722,-4.39335,0	1/1:88:0,88:0:0:88:3164:-284.76,-26.4906,0
chr08	2020807	.	C	T	18713.7	PASS	AB=0.510755;ABP=5.20562;AC=37;AF=0.196809;AN=188;AO=1128;CIGAR=1X;DP=6230;DPB=6230;DPRA=0.937949;EPP=2452.43;EPPR=11060.1;GTI=1;LEN=1;MEANALT=1.075;MQM=59.9663;MQMR=58.2914;NS=94;NUMALT=1;ODDS=4.82204;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40214;QR=182071;RO=5092;RPL=0;RPP=2452.43;RPPR=11060.1;RPR=1128;RUN=1;SAF=1128;SAP=2452.43;SAR=0;SRF=5092;SRP=11060.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.104	0/0:75:74,0:74:2660:0:0:0,-22.2762,-238.624	0/1:84:49,35:49:1752:35:1252:-87.6986,0,-131.46	0/0:126:125,1:125:4469:1:36:0,-34.3315,-398.636	0/1:38:29,8:29:1013:8:288:-14.8064,0,-79.8843	0/1:33:20,13:20:716:13:455:-31.348,0,-54.8096	0/0:105:105,0:105:3752:0:0:0,-31.6081,-337.058	0/0:88:88,0:88:3135:0:0:0,-26.4906,-282.108	0/0:76:76,0:76:2707:0:0:0,-22.8783,-242.96	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.685	0/0:58:58,0:58:2080:0:0:0,-17.4597,-186.756	0/0:92:92,0:92:3299:0:0:0,-27.6948,-296.792	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.095	0/0:89:88,0:88:3152:0:0:0,-26.4906,-283.457	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.444	0/0:57:57,0:57:2048:0:0:0,-17.1587,-183.971	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.038	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.2225	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.487	0/0:92:91,0:91:3272:0:0:0,-27.3937,-294.352	0/0:73:73,0:73:2612:0:0:0,-21.9752,-234.644	0/1:84:31,53:31:1112:53:1884:-144.552,0,-74.9741	0/0:102:102,0:102:3652:0:0:0,-30.7051,-327.742	0/1:24:17,7:17:603:7:252:-15.8042,0,-46.8709	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.37	0/1:116:56,60:56:1996:60:2144:-158.303,0,-144.96	0/1:139:51,88:51:1817:88:3118:-239.005,0,-121.04	0/0:24:23,0:23:828:0:0:0,-6.92369,-74.4557	0/0:116:115,0:115:4101:0:0:0,-34.6184,-368.594	0/0:97:95,2:95:3393:2:72:0,-22.3632,-298.523	0/1:96:46,50:46:1648:50:1796:-133.023,0,-119.625	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8125	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2576	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.0626	0/0:136:136,0:136:4849:0:0:0,-40.9401,-436.165	0/1:71:38,33:38:1351:33:1169:-84.1422,0,-100.091	0/1:50:30,20:30:1076:20:716:-49.7162,0,-81.303	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83577	0/1:46:25,21:25:877:21:752:-54.1589,0,-64.6945	0/1:23:10,13:10:360:13:460:-34.8117,0,-25.7744	0/1:97:42,54:42:1504:54:1932:-144.914,0,-106.319	0/1:43:20,23:20:712:23:824:-61.539,0,-51.4615	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.055	0/1:65:22,43:22:776:43:1540:-119.326,0,-50.5637	0/1:74:29,45:29:1040:45:1616:-123.454,0,-71.5883	0/1:120:62,58:62:2212:58:2052:-148.827,0,-162.578	0/0:73:73,0:73:2608:0:0:0,-21.9752,-233.18	0/0:60:60,0:60:2152:0:0:0,-18.0618,-192.554	0/0:145:144,0:144:5133:0:0:0,-43.3483,-461.153	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.5696	0/1:88:52,36:52:1868:36:1288:-89.7329,0,-141.224	0/1:38:19,19:19:680:19:684:-50.4512,0,-50.09	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.89397	0/1:88:41,47:41:1459:47:1684:-125.356,0,-104.433	0/1:20:15,5:15:536:5:176:-10.1644,0,-42.4676	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3851	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/0:101:101,0:101:3615:0:0:0,-30.404,-324.785	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.569	0/0:14:13,0:13:468:0:0:0,-3.91339,-42.1056	0/1:82:45,37:45:1608:37:1328:-95.1378,0,-120.317	0/0:71:71,0:71:2538:0:0:0,-21.3731,-228.465	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.47	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.442	0/0:124:124,0:124:4436:0:0:0,-37.3277,-398.097	0/1:104:29,75:29:1040:75:2660:-208.252,0,-62.4442	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.002	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.518	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.048	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.531	0/0:131:131,0:131:4677:0:0:0,-39.4349,-420.075	0/1:94:54,40:54:1936:40:1428:-100.521,0,-146.163	0/0:147:147,0:147:5233:0:0:0,-44.2514,-469.218	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.024	0/0:78:78,0:78:2800:0:0:0,-23.4803,-251.971	0/0:79:77,2:77:2735:2:68:0,-17.3237,-239.592	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.5446	0/0:60:60,0:60:2124:0:0:0,-18.0618,-190.841	0/1:80:28,52:28:1004:52:1836:-141.435,0,-66.4497	0/0:109:109,0:109:3889:0:0:0,-32.8123,-349.663	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.363	0/0:78:78,0:78:2795:0:0:0,-23.4803,-251.644	0/1:31:16,15:16:576:15:532:-38.8812,0,-42.8421	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.613	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7286	0/1:60:30,30:30:1080:30:1068:-78.3657,0,-79.4129	0/0:72:72,0:72:2592:0:0:0,-21.6742,-232.811	0/1:57:36,21:36:1283:21:741:-49.8529,0,-98.5458	0/1:138:74,64:74:2656:64:2279:-163.83,0,-197.534	0/1:58:29,29:29:1032:29:1040:-76.4546,0,-75.7053	0/0:65:59,5:59:2112:5:180:0,-3.01372,-173.497	0/0:89:89,0:89:3188:0:0:0,-26.7917,-286.942
chr08	2020813	.	T	G,A	134264	PASS	AB=0.482806,0.516735;ABP=8.61073,8.31602;AC=151,37;AF=0.803191,0.196809;AN=188;AO=5002,1140;CIGAR=1X,1X;DP=6147;DPB=6147;DPRA=33.0376,0.997266;EPP=10864.7,2461.15;EPPR=9.52472;GTI=1;LEN=1,1;MEANALT=1.45161,1.97561;MQM=58.3105,59.9667;MQMR=60;NS=94;NUMALT=2;ODDS=5.68398;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=178230,40804;QR=108;RO=3;RPL=0,2;RPP=10864.7,2461.15;RPPR=9.52472;RPR=5002,1138;RUN=1,1;SAF=5002,1140;SAP=10864.7,2478.49;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50,0:0:0:50,0:1768,0:-159.204,-15.0515,0,-159.204,-15.0515,-159.204	1/1:73:0,73,0:0:0:73,0:2615,0:-235.466,-21.9752,0,-235.466,-21.9752,-235.466	1/2:84:0,48,36:0:0:48,36:1720,1292:-245.001,-105.747,-91.2972,-139.612,0,-128.775	1/1:125:0,124,1:0:0:124,1:4406,36:-396.225,-37.3277,0,-393.288,-34.0305,-392.987	1/2:37:0,29,8:0:0:29,8:1032,288:-107.73,-23.8592,-15.1293,-84.2298,0,-81.8216	1/2:31:0,19,12:0:0:19,12:676,432:-90.6779,-35.6088,-29.8893,-55.4272,0,-51.8148	1/1:102:0,102,0:0:0:102,0:3614,0:-324.825,-30.7051,0,-324.825,-30.7051,-324.825	1/1:83:0,83,0:0:0:83,0:2972,0:-267.488,-24.9855,0,-267.488,-24.9855,-267.488	1/1:76:0,76,0:0:0:76,0:2707,0:-242.966,-22.8783,0,-242.966,-22.8783,-242.966	1/1:54:0,54,0:0:0:54,0:1931,0:-173.837,-16.2556,0,-173.837,-16.2556,-173.837	1/1:58:0,58,0:0:0:58,0:2076,0:-186.241,-17.4597,0,-186.241,-17.4597,-186.241	1/1:90:1,89,0:1:36:89,0:3173,0:-281.965,-23.4944,0,-282.266,-26.7917,-285.203	1/1:74:0,74,0:0:0:74,0:2636,0:-237.237,-22.2762,0,-237.237,-22.2762,-237.237	1/1:89:0,89,0:0:0:89,0:3192,0:-287.345,-26.7917,0,-287.345,-26.7917,-287.345	1/1:48:0,48,0:0:0:48,0:1711,0:-154.184,-14.4494,0,-154.184,-14.4494,-154.184	1/1:54:0,54,0:0:0:54,0:1936,0:-173.897,-16.2556,0,-173.897,-16.2556,-173.897	1/1:30:0,30,0:0:0:30,0:1072,0:-96.6781,-9.0309,0,-96.6781,-9.0309,-96.6781	1/1:28:0,28,0:0:0:28,0:1002,0:-90.4241,-8.42884,0,-90.4241,-8.42884,-90.4241	1/1:34:0,34,0:0:0:34,0:1224,0:-110.297,-10.235,0,-110.297,-10.235,-110.297	1/1:89:0,89,0:0:0:89,0:3169,0:-285.371,-26.7917,0,-285.371,-26.7917,-285.371	1/1:71:0,71,0:0:0:71,0:2522,0:-226.615,-21.3731,0,-226.615,-21.3731,-226.615	1/2:84:0,30,54:0:0:30,54:1072,1920:-244.227,-156.822,-147.791,-87.7616,0,-71.5059	1/1:100:0,100,0:0:0:100,0:3553,0:-318.873,-30.103,0,-318.873,-30.103,-318.873	1/2:24:0,17,7:0:0:17,7:599,252:-69.3848,-20.9217,-15.8042,-48.82,0,-46.7128	1/1:62:0,62,0:0:0:62,0:2215,0:-199.557,-18.6639,0,-199.557,-18.6639,-199.557	1/2:118:0,56,62:0:0:56,62:2004,2216:-344.419,-181.035,-164.178,-163.742,0,-145.078	1/2:135:0,48,87:0:0:48,87:1724,3116:-395.011,-254.477,-240.028,-140.892,0,-114.703	1/1:26:0,26,0:0:0:26,0:928,0:-83.735,-7.82678,0,-83.735,-7.82678,-83.735	1/1:113:0,113,0:0:0:113,0:4020,0:-361.682,-34.0164,0,-361.682,-34.0164,-361.682	1/1:95:0,93,2:0:0:93,2:3335,72:-299.882,-27.9958,0,-294.007,-21.7611,-293.405	1/2:99:0,47,52:0:0:47,52:1692,1868:-290.72,-152.746,-138.597,-138.333,0,-122.68	1/2:15:0,9,6:0:0:9,6:320,216:-44.0594,-17.9843,-15.2751,-26.4331,0,-24.6269	1/1:19:0,19,0:0:0:19,0:684,0:-61.8125,-5.71957,0,-61.8125,-5.71957,-61.8125	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:8:0,7,0:0:0:7,0:248,0:-22.2968,-2.10721,0,-22.2968,-2.10721,-22.2968	1/1:25:0,25,0:0:0:25,0:884,0:-79.7087,-7.52575,0,-79.7087,-7.52575,-79.7087	1/1:134:0,133,1:0:0:133,1:4742,36:-426.34,-40.037,0,-423.402,-36.7397,-423.101	1/2:71:0,39,32:0:0:39,32:1379,1133:-204.368,-92.6437,-80.9035,-112.077,0,-102.444	1/2:51:0,30,21:0:0:30,21:1071,756:-148.561,-62.0456,-53.0147,-86.8724,0,-80.5508	1/1:2:0,2,0:0:0:2,0:72,0:-6.83577,-0.60206,0,-6.83577,-0.60206,-6.83577	1/2:46:0,24,22:0:0:24,22:808,788:-130.003,-64.6221,-57.3974,-65.7281,0,-59.1055	1/2:23:0,10,13:0:0:10,13:360,468:-67.8745,-38.5463,-35.536,-29.6878,0,-25.7744	1/2:98:0,44,54:0:0:44,54:1578,1932:-286.501,-157.896,-144.651,-128.962,0,-112.707	1/2:41:0,18,23:0:0:18,23:640,828:-120.073,-67.9204,-62.5019,-52.5099,0,-45.5862	1/1:46:0,46,0:0:0:46,0:1656,0:-149.295,-13.8474,0,-149.295,-13.8474,-149.295	1/2:64:0,21,43:0:0:21,43:736,1548:-186.53,-126.669,-120.347,-60.215,0,-47.2707	1/2:75:0,30,45:0:0:30,45:1080,1612:-219.897,-131.824,-122.793,-88.432,0,-74.8856	1/2:118:0,62,56:0:0:62,56:2185,2001:-340.83,-163.506,-144.842,-177.679,0,-160.821	1/1:75:0,75,0:0:0:75,0:2655,0:-238.26,-22.5773,0,-238.26,-22.5773,-238.26	1/1:59:0,59,0:0:0:59,0:2116,0:-189.313,-17.7608,0,-189.313,-17.7608,-189.313	1/1:136:0,136,0:0:0:136,0:4817,0:-433.005,-40.9401,0,-433.005,-40.9401,-433.005	1/2:5:0,3,2:0:0:3,2:104,72:-14.6795,-6.23466,-5.33157,-8.7993,0,-8.19724	1/2:87:0,52,35:0:0:52,35:1855,1252:-252.999,-102.449,-86.7955,-150.906,0,-140.37	1/2:37:0,18,19:0:0:18,19:640,680:-107.964,-55.8096,-50.3911,-52.5108,0,-46.7912	1/2:7:0,3,4:0:0:3,4:93,144:-19.5476,-12.1095,-11.2064,-7.76928,0,-6.56516	1/2:87:0,40,47:0:0:40,47:1436,1688:-254.516,-138.059,-126.017,-116.815,0,-102.667	1/2:19:0,14,5:0:0:14,5:496,180:-55.3619,-15.0469,-10.8325,-40.6731,0,-39.168	1/1:16:0,16,0:0:0:16,0:5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chr08	2069486	.	A	C	29128.2	PASS	AB=0.434308;ABP=164.488;AC=37;AF=0.196809;AN=188;AO=1891;CIGAR=1X;DP=12256;DPB=12256;DPRA=0.970018;EPP=4109.26;EPPR=22497.3;GTI=1;LEN=1;MEANALT=1.04651;MQM=54.7964;MQMR=59.9649;NS=94;NUMALT=1;ODDS=3.75847;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67164;QR=371484;RO=10359;RPL=1891;RPP=4109.26;RPPR=22497.3;RPR=0;RUN=1;SAF=1891;SAP=4109.26;SAR=0;SRF=10359;SRP=22497.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:266:265,1:265:9485:1:36:0,-76.4767,-850.01	0/1:155:91,64:91:3272:64:2281:-157.576,0,-248.039	0/0:260:260,0:260:9332:0:0:0,-78.2678,-839.769	0/1:75:58,17:58:2080:17:603:-31.9094,0,-164.893	0/1:59:38,21:38:1368:21:748:-49.7119,0,-105.66	0/0:200:200,0:200:7192:0:0:0,-60.206,-647.331	0/0:300:300,0:300:10708:0:0:0,-90.309,-963.624	0/0:137:137,0:137:4890:0:0:0,-41.2411,-440.232	0/0:159:159,0:159:5720:0:0:0,-47.8638,-514.914	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.906	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:207:207,0:207:7432:0:0:0,-62.3132,-668.922	0/0:167:166,0:166:5941:0:0:0,-49.971,-534.546	0/1:140:57,83:57:2052:83:2938:-221.035,0,-142.807	0/0:213:213,0:213:7629:0:0:0,-64.1194,-686.636	0/1:143:104,39:104:3740:39:1394:-82.6293,0,-293.752	0/0:104:103,1:103:3677:1:36:0,-27.7098,-327.534	0/1:405:242,163:242:8670:163:5792:-397.023,0,-658.371	0/1:307:197,109:197:7088:109:3858:-254.126,0,-545.471	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:396:396,0:396:14232:0:0:0,-119.208,-1279.84	0/0:304:295,9:295:10543:9:311:0,-63.1954,-920.463	0/1:197:123,74:123:4412:74:2643:-177.65,0,-337.577	0/1:8:2,6:2:72:6:207:-16.5539,0,-4.42848	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	1/1:4:0,4:0:0:4:144:-13.3084,-1.20412,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:262:261,0:261:9360:0:0:0,-78.5688,-842.089	0/1:212:119,92:119:4284:92:3296:-232.803,0,-321.538	0/1:71:47,24:47:1692:24:835:-54.0281,0,-131.194	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:144:77,67:77:2764:67:2404:-173.136,0,-205.653	0/1:25:17,8:17:604:8:284:-18.3708,0,-47.1649	0/1:148:80,68:80:2876:68:2429:-174.086,0,-214.524	0/1:137:68,69:68:2424:69:2448:-177.946,0,-177.018	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.936	0/1:123:81,42:81:2908:42:1512:-98.8576,0,-224.928	0/1:154:65,89:65:2309:89:3179:-239.675,0,-161.71	0/1:183:82,101:82:2944:101:3598:-268.069,0,-210.105	0/0:150:150,0:150:5400:0:0:0,-45.1545,-486.127	0/0:178:177,0:177:6360:0:0:0,-53.2823,-572.237	0/0:184:184,0:184:6616:0:0:0,-55.3895,-595.516	0/1:19:8,11:8:288:11:396:-30.0094,0,-20.5478	0/1:181:103,78:103:3692:78:2808:-198.193,0,-277.996	0/1:83:50,33:50:1796:33:1184:-81.4507,0,-136.929	0/1:21:12,9:12:432:9:320:-22.813,0,-32.8996	0/1:125:65,60:65:2340:60:2133:-154.418,0,-173.229	0/1:79:42,37:42:1497:37:1303:-93.4223,0,-111.241	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:33:23,10:23:828:10:360:-22.728,0,-64.9101	0/0:193:193,0:193:6901:0:0:0,-58.0988,-621.157	0/0:141:141,0:141:5056:0:0:0,-42.4452,-455.167	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:241:143,98:143:5120:98:3471:-238.952,0,-388.38	0/0:341:341,0:341:12222:0:0:0,-102.651,-1099.81	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.874	0/0:261:259,2:259:9266:2:68:0,-72.1221,-827.458	0/1:65:36,29:36:1292:29:1035:-73.7191,0,-97.0168	0/0:46:45,1:45:1612:1:36:0,-10.2501,-141.773	0/0:119:119,0:119:4260:0:0:0,-35.8226,-383.579	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:23:22,1:22:788:1:36:0,-3.33227,-67.6534	0/0:109:108,0:108:3884:0:0:0,-32.5112,-349.393	0/1:85:44,41:44:1584:41:1457:-105.73,0,-117.264	0/0:273:273,0:273:9796:0:0:0,-82.1812,-881.513	0/0:239:239,0:239:8569:0:0:0,-71.9462,-771.203	0/0:246:246,0:246:8812:0:0:0,-74.0534,-793.061	0/0:198:197,1:197:7053:1:36:0,-56.0067,-631.214	0/1:21:5,16:5:180:16:545:-43.0361,0,-10.2304	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.482	0/1:170:102,68:102:3656:68:2427:-167.245,0,-278.069	0/0:195:195,0:195:6997:0:0:0,-58.7008,-629.783	0/0:152:152,0:152:5430:0:0:0,-45.7566,-488.827	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:139:83,56:83:2976:56:1986:-136.507,0,-226.229	0/0:189:189,0:189:6792:0:0:0,-56.8947,-611.348	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:92:51,41:51:1828:41:1426:-100.9,0,-137.105	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:51:21,30:21:756:30:1031:-77.5496,0,-53.0147	0/1:108:62,46:62:2228:46:1614:-112.998,0,-168.272	0/1:109:37,72:37:1313:72:2516:-193.478,0,-85.6574	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:161:161,0:161:5788:0:0:0,-48.4658,-521.025
chr08	2069553	.	G	C	128340	PASS	AB=0.479323;ABP=16.8392;AC=152;AF=0.808511;AN=188;AO=7601;CIGAR=1X;DP=9555;DPB=9555;DPRA=0;EPP=16508.4;EPPR=4239.55;GTI=0;LEN=1;MEANALT=1.03191;MQM=32.3127;MQMR=45.3234;NS=94;NUMALT=1;ODDS=7.3373;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272126;QR=69851;RO=1951;RPL=7601;RPP=16508.4;RPPR=4239.55;RPR=0;RUN=1;SAF=0;SAP=16508.4;SAR=7601;SRF=0;SRP=4239.55;SRR=1951;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57:0:0:57:2040:-159.007,-17.1587,0	1/1:69:0,69:0:0:69:2476:-194.342,-20.7711,0	0/1:169:108,61:108:3868:61:2188:-120.615,0,-292.999	1/1:253:0,253:0:0:253:9081:-694.208,-76.1606,0	0/1:36:23,13:23:816:13:468:-26.0807,0,-61.9598	0/1:46:20,26:20:720:26:928:-56.4389,0,-50.1699	1/1:155:0,155:0:0:155:5560:-424.179,-46.6597,0	1/1:186:0,186:0:0:186:6671:-520.189,-55.9916,0	1/1:128:0,128:0:0:128:4570:-356.138,-38.5318,0	1/1:102:0,102:0:0:102:3619:-274.522,-30.7051,0	1/1:56:0,56:0:0:56:1985:-151.081,-16.8577,0	1/1:97:0,97:0:0:97:3484:-267.846,-29.1999,0	1/1:98:0,98:0:0:98:3520:-270.924,-29.5009,0	1/1:33:0,32:0:0:32:1152:-88.3053,-9.63296,0	1/1:76:0,76:0:0:76:2720:-204.919,-22.8783,0	1/1:58:0,58:0:0:58:2073:-155.629,-17.4597,0	1/1:25:0,25:0:0:25:887:-69.4265,-7.52575,0	1/1:33:0,33:0:0:33:1184:-92.2245,-9.93399,0	1/1:25:0,25:0:0:25:900:-70.9671,-7.52575,0	1/1:187:0,187:0:0:187:6672:-503.498,-56.2926,0	1/1:174:0,174:0:0:174:6240:-474.753,-52.3792,0	0/1:137:102,35:102:3641:35:1233:-55.9083,0,-282.409	1/1:125:1,124:1:36:124:4439:-333.808,-34.0802,0	0/1:27:11,16:11:396:16:568:-35.8813,0,-26.3832	1/1:145:0,145:0:0:145:5139:-392.156,-43.6494,0	0/1:289:133,156:133:4768:156:5604:-351.312,0,-334.276	0/1:294:140,154:140:5036:154:5540:-333.617,0,-357.846	1/1:31:0,31:0:0:31:1116:-85.7767,-9.33193,0	1/1:343:0,343:0:0:343:12289:-958.034,-103.253,0	1/1:132:5,127:5:176:127:4564:-332.541,-23.753,0	0/1:145:74,71:74:2652:71:2552:-151.651,0,-190.138	0/1:16:12,4:12:432:4:144:-6.48531,0,-31.6353	1/1:25:0,25:0:0:25:896:-68.2023,-7.52575,0	0/1:16:7,9:7:252:9:324:-20.7974,0,-17.9949	1/1:14:0,14:0:0:14:500:-39.5093,-4.21442,0	1/1:46:0,46:0:0:46:1637:-127.41,-13.8474,0	1/1:161:0,161:0:0:161:5758:-447.399,-48.4658,0	0/1:124:60,64:60:2156:64:2300:-136.073,0,-154.361	0/1:48:27,21:27:972:21:756:-45.2729,0,-72.4241	1/1:11:0,11:0:0:11:396:-30.5454,-3.31133,0	0/1:164:76,88:76:2712:88:3164:-193.06,0,-187.194	0/1:48:19,29:19:684:29:1044:-64.328,0,-46.1215	0/1:150:88,62:88:3156:62:2220:-124.488,0,-233.716	0/1:50:30,20:30:1072:20:716:-39.9759,0,-80.246	1/1:57:0,57:0:0:57:2036:-157.343,-17.1587,0	0/1:159:61,98:61:2188:98:3509:-226.035,0,-145.27	0/1:156:87,69:87:3090:69:2438:-143.813,0,-226.859	0/1:179:88,91:88:3126:91:3241:-195.139,0,-221.523	1/1:152:0,152:0:0:152:5449:-413.251,-45.7566,0	1/1:119:0,119:0:0:119:4261:-324.032,-35.8226,0	1/1:89:0,89:0:0:89:3173:-246.955,-26.7917,0	0/1:12:8,4:8:288:4:144:-8.1349,0,-22.2918	0/1:124:75,49:75:2685:49:1764:-101.481,0,-201.189	0/1:76:45,31:45:1605:31:1112:-61.8501,0,-120.07	0/1:13:8,5:8:288:5:180:-10.4553,0,-21.9223	0/1:174:63,111:63:2264:111:3982:-251.959,0,-146.805	0/1:49:12,37:12:432:37:1328:-87.5353,0,-23.9283	1/1:27:0,27:0:0:27:968:-76.4292,-8.12781,0	0/1:23:16,7:16:576:7:252:-12.1129,0,-44.1885	1/1:85:0,85:0:0:85:3048:-233.391,-25.5876,0	1/1:103:0,103:0:0:103:3678:-278.566,-31.0061,0	1/1:17:0,17:0:0:17:608:-46.0822,-5.11751,0	0/1:274:146,128:146:5244:128:4604:-277.937,0,-382.758	1/1:199:3,195:3:93:195:6989:-523.699,-51.3983,0	1/1:51:0,51:0:0:51:1823:-139.008,-15.3525,0	1/1:124:0,124:0:0:124:4418:-335.194,-37.3277,0	1/1:194:0,194:0:0:194:6911:-527.051,-58.3998,0	0/1:133:90,43:90:3211:43:1533:-79.1952,0,-241.776	1/1:34:0,34:0:0:34:1220:-93.6964,-10.235,0	1/1:79:0,79:0:0:79:2827:-219.819,-23.7814,0	1/1:33:0,33:0:0:33:1188:-91.8207,-9.93399,0	1/1:20:0,20:0:0:20:720:-54.8617,-6.0206,0	1/1:85:0,85:0:0:85:3025:-237.774,-25.5876,0	0/1:150:92,58:92:3284:58:2069:-114.806,0,-247.003	1/1:160:0,159:0:0:159:5680:-434.587,-47.8638,0	1/1:155:0,155:0:0:155:5553:-425.232,-46.6597,0	1/1:153:0,153:0:0:153:5475:-427.895,-46.0576,0	1/1:84:1,83:1:36:83:2969:-228.792,-21.7279,0	0/1:17:5,12:5:180:12:432:-28.5782,0,-11.2521	1/1:108:1,107:1:36:107:3837:-288.261,-28.9627,0	0/1:118:47,71:47:1684:71:2544:-163.22,0,-114.257	1/1:220:0,220:0:0:220:7857:-595.151,-66.2266,0	1/1:47:0,47:0:0:47:1688:-129.231,-14.1484,0	1/1:67:0,67:0:0:67:2408:-184.647,-20.169,0	0/1:47:23,24:23:828:24:856:-51.7168,0,-59.5927	1/1:109:1,108:1:36:108:3884:-292.59,-29.214,0	1/1:22:0,22:0:0:22:792:-62.1604,-6.62266,0	0/1:59:34,25:34:1216:25:900:-52.5126,0,-89.7325	1/1:72:0,72:0:0:72:2575:-199.224,-21.6742,0	0/1:34:15,19:15:540:19:684:-40.5505,0,-37.552	0/1:74:33,41:33:1184:41:1472:-91.036,0,-82.2636	0/1:94:61,33:61:2192:33:1188:-63.0374,0,-165.688	1/1:178:0,178:0:0:178:6381:-486.057,-53.5833,0	1/1:143:0,143:0:0:143:5136:-383.794,-43.0473,0
chr08	2111780	.	CGGGAAA	CGGAAAA	25700.2	PASS	AB=0.489776;ABP=5.85195;AC=37;AF=0.196809;AN=188;AO=1546;CIGAR=3M1X3M;DP=8245;DPB=8244.29;DPRA=1.04969;EPP=3360.11;EPPR=14436.8;GTI=1;LEN=1;MEANALT=1.5;MQM=58.5796;MQMR=59.8818;NS=94;NUMALT=1;ODDS=7.229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55365;QR=233954;RO=6651;RPL=1546;RPP=3360.11;RPPR=14436.8;RPR=0;RUN=1;SAF=1546;SAP=3360.11;SAR=0;SRF=6651;SRP=14445.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:990:0:0:0,-8.42884,-89.4138	0/0:49:49,0:49:1724:0:0:0,-14.7505,-155.443	0/1:41:16,25:16:562:25:881:-67.2065,0,-38.5662	0/0:214:213,0:213:7482:0:0:0,-64.1194,-673.08	0/1:98:51,47:51:1791:47:1688:-122.657,0,-131.971	0/1:72:32,40:32:1125:40:1432:-107.447,0,-79.8831	0/0:146:145,1:145:5086:1:36:0,-40.3521,-454.294	0/0:88:87,0:87:3031:0:0:0,-26.1896,-272.653	0/0:77:77,0:77:2705:0:0:0,-23.1793,-243.686	0/0:59:59,0:59:2073:0:0:0,-17.7608,-186.764	0/0:69:68,0:68:2414:0:0:0,-20.47,-217.157	0/0:87:86,0:86:3016:0:0:0,-25.8886,-271.272	0/0:70:70,0:70:2450:0:0:0,-21.0721,-220.756	0/0:98:96,1:96:3342:1:36:0,-25.9639,-297.409	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.542	0/0:58:58,0:58:2028:0:0:0,-17.4597,-182.747	0/0:52:52,0:52:1823:0:0:0,-15.6536,-164.348	0/0:60:59,0:59:2076:0:0:0,-17.7608,-186.751	0/0:63:63,0:63:2223:0:0:0,-18.9649,-200.33	0/0:181:180,0:180:6327:0:0:0,-54.1854,-569.176	0/0:114:113,0:113:3997:0:0:0,-34.0164,-359.563	0/1:70:21,49:21:750:49:1747:-136.405,0,-46.7538	0/0:70:70,0:70:2458:0:0:0,-21.0721,-221.474	0/1:120:61,59:61:2106:59:2120:-154.836,0,-153.684	0/0:54:54,0:54:1892:0:0:0,-16.2556,-170.558	0/1:275:151,124:151:5338:124:4456:-318.274,0,-397.777	0/1:176:82,94:82:2843:94:3361:-249.433,0,-203.129	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.478	0/0:184:183,0:183:6425:0:0:0,-55.0885,-577.99	0/0:114:112,2:112:3982:2:72:0,-27.4817,-351.732	0/1:177:90,87:90:3141:87:3105:-225.811,0,-229.637	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:42:41,1:41:1449:1:36:0,-9.04498,-127.098	1/1:4:0,4:0:0:4:140:-12.9414,-1.20412,0	0/0:11:10,0:10:353:0:0:0,-3.0103,-31.7495	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:242:242,0:242:8549:0:0:0,-72.8493,-769.378	0/1:130:84,44:84:2944:44:1580:-103.583,0,-226.288	0/1:68:36,30:36:1290:30:1067:-75.8778,0,-96.1761	0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8524	0/1:131:69,62:69:2466:62:2221:-159.651,0,-182.76	0/1:61:34,27:34:1203:27:972:-69.4305,0,-90.2131	0/1:79:31,48:31:1087:48:1724:-131.592,0,-74.3565	0/1:67:36,30:36:1275:30:1080:-77.2885,0,-94.8278	0/0:76:75,0:75:2590:0:0:0,-22.5772,-232.993	0/1:107:69,37:69:2416:37:1332:-87.8033,0,-185.44	0/1:127:68,58:68:2376:58:2079:-148.56,0,-175.619	0/1:113:60,52:60:2117:52:1853:-132.824,0,-156.724	0/0:83:83,0:83:2888:0:0:0,-24.9855,-260.16	0/0:114:113,0:113:3972:0:0:0,-34.0164,-357.046	0/0:174:174,0:174:6144:0:0:0,-52.3792,-553.066	0/1:10:5,5:5:179:5:180:-13.5418,0,-13.4501	0/1:76:35,41:35:1233:41:1461:-108.421,0,-88.396	0/1:56:27,27:27:968:27:951:-69.0516,0,-70.8233	0/1:28:19,9:19:663:9:324:-20.9298,0,-51.565	0/1:63:29,34:29:1036:34:1224:-91.4123,0,-74.5895	0/1:68:28,40:28:990:40:1440:-109.399,0,-68.9437	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:22:8,12:8:287:12:432:-32.8795,0,-19.8325	0/0:65:64,0:64:2230:0:0:0,-19.2659,-200.605	0/0:178:176,0:176:6208:0:0:0,-52.9813,-558.417	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:219:114,104:114:4038:104:3736:-270.381,0,-297.628	0/0:61:61,0:61:2166:0:0:0,-18.3628,-195.208	0/0:37:37,0:37:1294:0:0:0,-11.1381,-116.761	0/0:56:55,0:55:1931:0:0:0,-16.5566,-173.704	0/0:141:141,0:141:4968:0:0:0,-42.4452,-447.277	0/1:54:17,37:17:599:37:1332:-103.75,0,-37.9834	0/0:33:33,0:33:1146:0:0:0,-9.93399,-103.445	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.385	0/0:84:84,0:84:2948:0:0:0,-25.2865,-265.551	0/0:19:19,0:19:678:0:0:0,-5.71957,-61.3489	0/0:76:75,0:75:2652:0:0:0,-22.5772,-238.568	0/1:49:26,20:26:920:20:716:-50.5607,0,-68.9371	0/0:197:197,0:197:6898:0:0:0,-59.3029,-620.851	0/0:88:88,0:88:3125:0:0:0,-26.4906,-281.456	0/0:163:162,0:162:5696:0:0:0,-48.7669,-512.393	0/0:78:75,2:75:2647:2:72:0,-16.704,-231.643	0/1:26:11,15:11:380:15:530:-39.874,0,-26.695	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/1:74:37,35:37:1279:35:1260:-91.2801,0,-92.9911	0/0:247:244,0:244:8585:0:0:0,-73.4513,-772.316	0/0:111:111,0:111:3930:0:0:0,-33.4143,-353.557	0/0:68:68,0:68:2362:0:0:0,-20.47,-212.793	0/1:90:49,40:49:1739:40:1434:-102.129,0,-129.637	0/0:171:168,2:168:5880:2:72:0,-44.6982,-522.469	0/0:39:36,0:36:1275:0:0:0,-10.8371,-114.734	0/1:111:57,54:57:1998:54:1912:-138.542,0,-146.679	0/0:60:60,0:60:2119:0:0:0,-18.0618,-190.976	0/1:62:35,27:35:1208:27:959:-67.9073,0,-90.3308	0/1:148:67,81:67:2339:81:2912:-217.601,0,-166.22	0/1:57:20,36:20:699:36:1292:-99.3711,0,-45.7498	0/0:104:102,0:102:3594:0:0:0,-30.7051,-323.23	0/0:104:104,0:104:3658:0:0:0,-31.3071,-329.43
chr08	2112116	.	CCA	AAA,CAA	67376.1	PASS	AB=0.521883,0.470685;ABP=8.04718,12.0494;AC=148,36;AF=0.804348,0.195652;AN=184;AO=2642,575;CIGAR=2X1M,1M1X1M;DP=3244;DPB=3244;DPRA=17.8132,1.00393;EPP=5740.04,1251.61;EPPR=0;GTI=3;LEN=2,1;MEANALT=1.65934,2.23684;MQM=59.9928,59.9617;MQMR=0;NS=92;NUMALT=2;ODDS=0.998545;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=91199,20445;QR=0;RO=0;RPL=0,0;RPP=5740.04,1251.61;RPPR=0;RPR=2642,575;RUN=1,1;SAF=0,0;SAP=5740.04,1251.61;SAR=2642,575;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,20,0:0:0:20,0:701,0:-63.1582,-6.0206,0,-63.1582,-6.0206,-63.1582	1/1:11:0,11,0:0:0:11,0:367,0:-33.3509,-3.31133,0,-33.3509,-3.31133,-33.3509	1/2:67:0,51,15:0:0:51,15:1763,536:-187.047,-43.8027,-28.4501,-143.342,0,-138.827	1/1:59:0,59,0:0:0:59,0:2067,0:-186.298,-17.7608,0,-186.298,-17.7608,-186.298	1/2:66:0,40,25:0:0:40,25:1376,896:-184.813,-73.0748,-61.0336,-111.731,0,-104.205	1/2:37:0,16,21:0:0:16,21:549,731:-104.359,-59.7888,-54.9723,-44.9156,0,-38.5939	1/1:50:0,50,0:0:0:50,0:1706,0:-153.817,-15.0515,0,-153.817,-15.0515,-153.817	1/1:77:0,75,0:0:0:75,0:2579,0:-232.109,-22.5773,0,-232.109,-22.5773,-232.109	1/1:22:0,22,0:0:0:22,0:779,0:-70.4318,-6.62266,0,-70.4318,-6.62266,-70.4318	1/1:17:0,17,0:0:0:17,0:588,0:-53.2428,-5.11751,0,-53.2428,-5.11751,-53.2428	1/1:27:0,27,0:0:0:27,0:922,0:-83.2862,-8.12781,0,-83.2862,-8.12781,-83.2862	1/1:50:0,50,0:0:0:50,0:1679,0:-151.386,-15.0515,0,-151.386,-15.0515,-151.386	1/1:32:0,32,0:0:0:32,0:1091,0:-98.4909,-9.63296,0,-98.4909,-9.63296,-98.4909	1/1:25:0,23,0:0:0:23,0:777,0:-69.9827,-6.92369,0,-69.9827,-6.92369,-69.9827	1/1:35:0,35,0:0:0:35,0:1196,0:-107.938,-10.5361,0,-107.938,-10.5361,-107.938	1/1:20:0,20,0:0:0:20,0:708,0:-64.046,-6.0206,0,-64.046,-6.0206,-64.046	1/1:20:0,19,0:0:0:19,0:671,0:-60.4995,-5.71957,0,-60.4995,-5.71957,-60.4995	1/1:17:0,16,0:0:0:16,0:561,0:-50.4589,-4.81648,0,-50.4589,-4.81648,-50.4589	1/1:21:0,20,0:0:0:20,0:656,0:-59.0749,-6.0206,0,-59.0749,-6.0206,-59.0749	1/1:75:0,75,0:0:0:75,0:2633,0:-237.215,-22.5773,0,-237.215,-22.5773,-237.215	1/1:20:0,20,0:0:0:20,0:659,0:-59.6171,-6.0206,0,-59.6171,-6.0206,-59.6171	1/2:84:0,26,58:0:0:26,58:919,2084:-245.214,-170.37,-162.544,-75.1993,0,-57.7396	1/1:21:0,21,0:0:0:21,0:745,0:-67.3688,-6.32163,0,-67.3688,-6.32163,-67.3688	1/2:22:0,14,7:0:0:14,7:489,252:-60.4078,-20.6318,-16.4174,-39.841,0,-37.7338	1/1:41:0,36,0:0:0:36,0:1203,0:-108.223,-10.8371,0,-108.223,-10.8371,-108.223	1/2:57:0,26,29:0:0:26,29:914,1030:-158.372,-83.975,-76.1482,-74.4402,0,-65.7103	1/2:47:0,25,21:0:0:25,21:862,751:-131.376,-61.3585,-53.8327,-70.1315,0,-63.8099	1/1:15:0,15,0:0:0:15,0:525,0:-47.5791,-4.51545,0,-47.5791,-4.51545,-47.5791	1/1:82:0,82,0:0:0:82,0:2840,0:-255.836,-24.6845,0,-255.836,-24.6845,-255.836	1/1:39:0,38,1:0:0:38,1:1308,36:-117.656,-11.4391,0,-114.718,-8.1419,-114.417	1/2:22:0,16,6:0:0:16,6:543,216:-62.0023,-17.9843,-13.1679,-44.3722,0,-42.566	1/2:5:0,4,1:0:0:4,1:142,36:-14.8635,-3.29724,-2.09312,-11.9251,0,-11.6241	1/1:10:0,10,0:0:0:10,0:345,0:-31.3819,-3.0103,0,-31.3819,-3.0103,-31.3819	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/1:10:0,10,0:0:0:10,0:349,0:-31.7447,-3.0103,0,-31.7447,-3.0103,-31.7447	1/1:85:0,85,0:0:0:85,0:2916,0:-262.673,-25.5876,0,-262.673,-25.5876,-262.673	1/2:39:0,19,20:0:0:19,20:646,705:-110.143,-57.7531,-52.0335,-52.7361,0,-46.7155	1/2:19:0,15,4:0:0:15,4:519,140:-53.9126,-11.7405,-7.22501,-42.5212,0,-41.3171	1/1:7:0,7,0:0:0:7,0:248,0:-22.6644,-2.10721,0,-22.6644,-2.10721,-22.6644	1/2:62:0,40,22:0:0:40,22:1369,784:-175.37,-64.2613,-52.2201,-111.46,0,-104.837	1/2:15:0,9,6:0:0:9,6:320,216:-44.0596,-17.9843,-15.2751,-26.4333,0,-24.6271	1/2:81:0,44,37:0:0:44,37:1508,1314:-229.823,-107.412,-94.1669,-122.76,0,-111.622	1/2:17:0,9,8:0:0:9,8:298,280:-47.2218,-23.1311,-20.4218,-24.4317,0,-22.0235	1/1:19:0,19,0:0:0:19,0:668,0:-60.4454,-5.71957,0,-60.4454,-5.71957,-60.4454	1/2:27:0,14,13:0:0:14,13:484,464:-77.5054,-38.1841,-33.9697,-39.6727,0,-35.7593	1/2:52:0,38,14:0:0:38,14:1272,494:-143.56,-40.5786,-29.1395,-103.33,0,-99.1152	1/2:32:0,13,19:0:0:13,19:453,680:-92.6448,-55.8096,-51.8962,-37.1873,0,-31.4677	1/1:39:0,39,0:0:0:39,0:1350,0:-121.794,-11.7402,0,-121.794,-11.7402,-121.794	1/1:36:0,36,0:0:0:36,0:1234,0:-111.355,-10.8371,0,-111.355,-10.8371,-111.355	1/1:55:0,54,0:0:0:54,0:1846,0:-166.16,-16.2556,0,-166.16,-16.2556,-166.16	.:.:.:.:.:.:.:.	1/2:40:0,20,20:0:0:20,20:654,720:-111.908,-59.1082,-53.0876,-53.1434,0,-47.1228	1/2:37:0,15,22:0:0:15,22:516,788:-106.521,-64.6221,-60.1067,-42.2485,0,-35.6259	1/2:5:0,3,2:0:0:3,2:95,72:-13.853,-6.23466,-5.33157,-7.96082,0,-7.35876	1/2:31:0,21,10:0:0:21,10:733,341:-87.6321,-28.0075,-21.6858,-59.9681,0,-56.9578	1/2:20:0,5,15:0:0:5,15:161,536:-57.0304,-44.0594,-42.5542,-13.3017,0,-8.78626	.:.:.:.:.:.:.:.	1/2:5:0,3,2:0:0:3,2:106,72:-14.8635,-6.23466,-5.33157,-8.98601,0,-8.38395	1/1:33:0,33,0:0:0:33,0:1136,0:-102.541,-9.93399,0,-102.541,-9.93399,-102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chr08	2138287	.	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chr08	2179150	.	G	A	21009.7	PASS	AB=0.417888;ABP=198.788;AC=36;AF=0.191489;AN=188;AO=1404;CIGAR=1X;DP=8632;DPB=8632;DPRA=1.02191;EPP=3025.76;EPPR=15583.5;GTI=2;LEN=1;MEANALT=1.05;MQM=59.8469;MQMR=59.9755;NS=94;NUMALT=1;ODDS=0.193178;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49167;QR=258038;RO=7219;RPL=3;RPP=3025.76;RPPR=15583.5;RPR=1401;RUN=1;SAF=1404;SAP=3051.76;SAR=0;SRF=7219;SRP=15678.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1668:0:0:0,-14.1484,-150.405	0/0:118:118,0:118:4210:0:0:0,-35.5215,-379.07	0/1:150:87,63:87:3102:63:2191:-152.297,0,-234.252	0/0:258:258,0:258:9227:0:0:0,-77.6657,-830.4	0/1:63:35,28:35:1244:28:973:-68.9152,0,-93.2998	0/1:21:8,13:8:280:13:468:-36.1334,0,-19.2177	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.389	0/0:148:147,0:147:5263:0:0:0,-44.2514,-472.237	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.546	0/0:102:102,0:102:3649:0:0:0,-30.7051,-328.612	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:55:54,0:54:1919:0:0:0,-16.2556,-172.715	0/0:36:35,1:35:1247:1:36:0,-7.2388,-108.936	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:187:187,0:187:6660:0:0:0,-56.2926,-599.477	0/0:181:181,0:181:6437:0:0:0,-54.4864,-579.421	0/1:159:65,94:65:2313:94:3329:-251.964,0,-160.565	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:86:63,22:63:2255:22:773:-43.9425,0,-177.265	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:330:181,149:181:6469:149:5239:-372.155,0,-482.955	0/1:202:130,72:130:4639:72:2545:-168.459,0,-356.864	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:296:296,0:296:10589:0:0:0,-89.1049,-952.866	0/0:133:131,0:131:4692:0:0:0,-39.4349,-422.08	0/1:95:63,32:63:2260:32:1148:-75.0312,0,-175.065	0/1:16:10,6:10:356:6:212:-14.6083,0,-27.5648	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:156:155,0:155:5554:0:0:0,-46.6596,-499.622	0/1:169:86,83:86:3079:83:2933:-213.331,0,-226.463	0/1:50:36,14:36:1296:14:492:-29.5607,0,-101.892	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:126:79,47:79:2831:47:1619:-107.933,0,-217.098	0/1:42:18,24:18:644:24:848:-63.9964,0,-45.6473	0/1:153:92,61:92:3287:61:2168:-149.325,0,-249.992	0/1:44:23,21:23:820:21:752:-54.7609,0,-60.8772	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:90:58,32:58:2068:32:1114:-73.4705,0,-159.298	0/1:143:96,47:96:3431:47:1657:-106.368,0,-265.956	0/1:186:116,69:116:4168:69:2403:-160.599,0,-319.379	0/0:147:147,0:147:5244:0:0:0,-44.2514,-472.097	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:188:188,0:188:6686:0:0:0,-56.5936,-601.818	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:125:65,60:65:2328:60:1995:-142.174,0,-172.151	0/1:56:39,17:39:1392:17:606:-38.0134,0,-108.721	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3501	0/1:138:93,45:93:3332:45:1555:-98.6889,0,-258.555	0/1:83:53,30:53:1875:30:1053:-70.0927,0,-144.043	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/1:12:9,3:9:324:3:104:-6.09045,0,-25.8935	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:175:110,65:110:3947:65:2203:-145.79,0,-302.093	0/0:208:208,0:208:7436:0:0:0,-62.6142,-669.284	0/0:114:114,0:114:4072:0:0:0,-34.3174,-366.668	0/0:114:114,0:114:4083:0:0:0,-34.3174,-367.652	0/0:180:177,3:177:6333:3:104:0,-44.4826,-560.357	0/1:110:47,63:47:1680:63:2188:-163.208,0,-118.374	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:76:76,0:76:2723:0:0:0,-22.8783,-245.312	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:104:102,2:102:3637:2:70:0,-24.6598,-320.887	0/1:66:44,22:44:1572:22:765:-49.2992,0,-121.904	0/0:154:154,0:154:5496:0:0:0,-46.3586,-494.761	0/0:151:151,0:151:5404:0:0:0,-45.4555,-486.49	0/0:137:137,0:137:4912:0:0:0,-41.2411,-442.23	0/0:119:119,0:119:4236:0:0:0,-35.8226,-381.419	0/1:25:22,3:22:777:3:104:-2.16861,0,-62.7246	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.929	0/1:92:43,49:43:1528:49:1672:-123.063,0,-110.118	0/0:273:271,0:271:9690:0:0:0,-81.5791,-871.738	0/0:102:102,0:102:3651:0:0:0,-30.7051,-328.794	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:72:39,33:39:1370:33:1172:-84.0558,0,-101.923	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:61:32,29:32:1148:29:1020:-73.7488,0,-85.267	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:40:17,23:17:612:23:816:-61.7205,0,-43.3722	0/1:55:31,24:31:1107:24:864:-61.5259,0,-83.3835	0/1:65:24,41:24:851:41:1472:-113.204,0,-57.3425	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:56:55,1:55:1972:1:36:0,-13.2594,-174.155
chr08	2179152	.	C	A	143716	PASS	AB=0.559527;ABP=104.61;AC=152;AF=0.808511;AN=188;AO=6919;CIGAR=1X;DP=8383;DPB=8383;DPRA=0;EPP=14828.3;EPPR=3114.94;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.979;MQMR=59.8085;NS=94;NUMALT=1;ODDS=2.22868;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=239242;QR=52074;RO=1457;RPL=23;RPP=14828.3;RPPR=3114.94;RPR=6896;RUN=1;SAF=6919;SAP=15027.4;SAR=0;SRF=1457;SRP=3166.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:1,44:1:21:44:1489:-132.192,-11.4464,0	1/1:111:0,111:0:0:111:3793:-341.569,-33.4143,0	0/1:156:71,85:71:2539:85:2953:-219.04,0,-181.799	1/1:249:0,249:0:0:249:8534:-768.07,-74.9565,0	0/1:59:27,32:27:972:32:1113:-82.7143,0,-70.0371	0/1:21:13,8:13:468:8:280:-19.2177,0,-36.1334	1/1:105:0,105:0:0:105:3649:-328.615,-31.6082,0	1/1:139:0,139:0:0:139:4819:-433.439,-41.8432,0	1/1:77:0,77:0:0:77:2735:-246.392,-23.1793,0	1/1:102:0,102:0:0:102:3543:-319.08,-30.7051,0	1/1:38:0,38:0:0:38:1348:-121.62,-11.4391,0	1/1:40:0,40:0:0:40:1398:-126.113,-12.0412,0	1/1:51:0,51:0:0:51:1786:-161.019,-15.3525,0	1/1:52:0,52:0:0:52:1848:-166.6,-15.6536,0	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	1/1:54:0,54:0:0:54:1885:-169.924,-16.2556,0	1/1:31:0,31:0:0:31:1096:-98.9499,-9.33193,0	1/1:40:0,40:0:0:40:1413:-127.465,-12.0412,0	1/1:30:0,30:0:0:30:1047:-94.5381,-9.0309,0	1/1:175:0,174:0:0:174:6056:-544.791,-52.3792,0	1/1:171:0,171:0:0:171:5719:-514.837,-51.4761,0	0/1:159:97,61:97:3456:61:2011:-133.324,0,-263.331	1/1:47:0,47:0:0:47:1578:-142.297,-14.1484,0	0/1:83:22,61:22:792:61:2119:-165.989,0,-46.6198	1/1:65:0,65:0:0:65:2246:-202.396,-19.567,0	0/1:330:154,176:154:5486:176:6073:-447.337,0,-394.343	0/1:194:71,123:71:2540:123:4166:-316.718,0,-170.423	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:293:0,292:0:0:292:10118:-910.316,-87.9008,0	1/1:125:0,125:0:0:125:4320:-388.972,-37.6288,0	0/1:91:32,59:32:1135:59:2036:-156.112,0,-75.0635	0/1:14:5,9:5:180:9:305:-23.5628,0,-12.3376	1/1:26:0,26:0:0:26:920:-83.1171,-7.82678,0	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	1/1:13:0,13:0:0:13:449:-40.7375,-3.91339,0	1/1:13:0,13:0:0:13:438:-39.7396,-3.91339,0	1/1:150:0,149:0:0:149:5270:-474.05,-44.8535,0	0/1:164:85,79:85:3052:79:2713:-195.04,0,-225.539	0/1:50:15,35:15:540:35:1203:-93.515,0,-33.8846	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:125:49,75:49:1764:75:2615:-198.054,0,-121.373	0/1:41:24,17:24:864:17:591:-41.1715,0,-65.7403	0/1:152:60,92:60:2148:92:3159:-238.77,0,-147.831	0/1:46:23,23:23:824:23:794:-57.9259,0,-60.6359	1/1:42:0,42:0:0:42:1439:-129.798,-12.6433,0	0/1:89:34,55:34:1224:55:1859:-140.785,0,-83.1844	0/1:136:52,84:52:1860:84:2929:-222.9,0,-126.683	0/1:186:71,115:71:2544:115:3970:-301.499,0,-173.216	1/1:140:0,140:0:0:140:4834:-435.218,-42.1442,0	1/1:101:0,101:0:0:101:3469:-312.417,-30.404,0	1/1:180:0,180:0:0:180:6280:-565.3,-54.1854,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:123:63,60:63:2245:60:2095:-151.788,0,-165.276	0/1:53:17,36:17:595:36:1251:-96.9314,0,-37.9221	0/1:22:10,12:10:360:12:409:-30.5128,0,-26.1216	0/1:134:47,87:47:1684:87:2978:-227.911,0,-111.508	0/1:79:33,46:33:1179:46:1629:-123.115,0,-82.6355	1/1:20:0,20:0:0:20:682:-61.6947,-6.0206,0	0/1:12:3,9:3:104:9:309:-24.5283,0,-6.09045	1/1:53:0,52:0:0:52:1803:-162.187,-15.6536,0	1/1:69:0,69:0:0:69:2396:-215.893,-20.7711,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:176:72,104:72:2562:104:3636:-274.464,0,-177.777	1/1:201:0,201:0:0:201:7026:-632.41,-60.507,0	1/1:108:0,108:0:0:108:3449:-310.611,-32.5112,0	1/1:109:0,109:0:0:109:3772:-339.673,-32.8123,0	1/1:175:3,172:3:104:172:5897:-521.142,-42.9774,0	0/1:111:65,46:65:2321:46:1570:-108.166,0,-174.543	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:39:0,39:0:0:39:1351:-121.882,-11.7402,0	1/1:75:0,75:0:0:75:2608:-234.965,-22.5773,0	1/1:14:0,14:0:0:14:481:-43.6151,-4.21442,0	1/1:97:0,97:0:0:97:3390:-305.314,-29.1999,0	0/1:65:23,42:23:820:42:1453:-111.493,0,-54.5556	1/1:150:0,150:0:0:150:5194:-467.601,-45.1545,0	1/1:143:0,143:0:0:143:4983:-448.619,-43.0473,0	1/1:133:0,133:0:0:133:4511:-406.159,-40.037,0	1/1:117:0,117:0:0:117:3981:-358.465,-35.2205,0	0/1:24:4,20:4:144:20:682:-54.47,0,-6.08053	1/1:90:0,90:0:0:90:3147:-283.45,-27.0927,0	0/1:98:54,44:54:1940:44:1540:-109.388,0,-145.288	1/1:269:0,269:0:0:269:9206:-828.522,-80.9771,0	1/1:99:0,98:0:0:98:3447:-310.083,-29.5009,0	1/1:31:0,31:0:0:31:1073:-96.8753,-9.33193,0	0/1:68:33,35:33:1171:35:1221:-89.7213,0,-85.2183	1/1:101:0,101:0:0:101:3568:-321.33,-30.404,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:60:30,30:30:1064:30:1031:-75.0306,0,-78.0099	1/1:32:0,32:0:0:32:1110:-100.203,-9.63296,0	0/1:41:23,18:23:828:18:636:-45.2258,0,-62.5019	0/1:55:25,30:25:888:30:1057:-78.8823,0,-63.6824	0/1:66:41,25:41:1476:25:888:-60.371,0,-113.263	1/1:83:0,83:0:0:83:2888:-260.154,-24.9855,0	1/1:53:1,52:1:36:52:1850:-163.18,-12.3563,0
chr08	2179171	.	TAT	AAT,AAC	186459	PASS	AB=0.55969,0.437333;ABP=106.962,117.59;AC=153,35;AF=0.81383,0.18617;AN=188;AO=7131,1478;CIGAR=1X2M,1X1M1X;DP=8639;DPB=8643.67;DPRA=0,1.25909;EPP=15461.7,3126.18;EPPR=7.35324;GTI=1;LEN=1,3;MEANALT=1.69149,2.3;MQM=59.9784,59.8106;MQMR=60;NS=94;NUMALT=2;ODDS=2.65326;PAIRED=0,0;PAIREDR=0;PAO=7,7;PQA=162,162;PQR=0;PRO=0;QA=254447,50303;QR=57;RO=2;RPL=7128,1468;RPP=15461.7,3126.18;RPPR=7.35324;RPR=3,10;RUN=1,1;SAF=7131,1478;SAP=15487.8,3212.45;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49,0:0:0:49,0:1756,0:-158.324,-14.7505,0,-158.324,-14.7505,-158.324	1/1:115:0,114,0:0:0:114,0:4056,0:-364.866,-34.3174,0,-364.866,-34.3174,-364.866	1/2:157:0,87,68:0:0:87,68:3108,2326:-442.217,-188.808,-162.618,-253.437,0,-232.967	1/1:255:0,253,1:0:0:253,1:9053,36:-814.356,-76.1606,0,-811.419,-73.2533,-811.118	1/2:60:0,32,28:0:0:32,28:1129,961:-170.306,-78.3699,-68.737,-92.2834,0,-83.8545	1/2:21:0,8,13:0:0:8,13:284,431:-58.3427,-35.1935,-32.7852,-23.4951,0,-19.5817	1/1:107:0,107,0:0:0:107,0:3840,0:-345.736,-32.2102,0,-345.736,-32.2102,-345.736	1/1:145:0,145,0:0:0:145,0:5139,0:-462.65,-43.6494,0,-462.65,-43.6494,-462.65	1/1:86:0,84,0:0:0:84,0:2978,0:-267.936,-25.2865,0,-267.936,-25.2865,-267.936	1/1:102:0,100,0:0:0:100,0:3568,0:-320.969,-30.103,0,-320.969,-30.103,-320.969	1/1:38:0,38,0:0:0:38,0:1345,0:-121.348,-11.4391,0,-121.348,-11.4391,-121.348	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/1:53:1,52,0:1:21:52,0:1860,0:-165.58,-13.8546,0,-165.881,-15.6536,-167.467	1/1:54:0,54,0:0:0:54,0:1916,0:-172.715,-16.2556,0,-172.715,-16.2556,-172.715	1/1:47:0,47,0:0:0:47,0:1680,0:-151.487,-14.1484,0,-151.487,-14.1484,-151.487	1/1:56:0,56,0:0:0:56,0:2000,0:-180.274,-16.8577,0,-180.274,-16.8577,-180.274	1/1:34:0,32,0:0:0:32,0:1144,0:-102.971,-9.63296,0,-102.971,-9.63296,-102.971	1/1:41:0,41,0:0:0:41,0:1459,0:-131.605,-12.3422,0,-131.605,-12.3422,-131.605	1/1:31:0,31,0:0:0:31,0:1108,0:-100.031,-9.33193,0,-100.031,-9.33193,-100.031	1/1:183:1,182,0:1:36:182,0:6481,0:-579.78,-51.4902,0,-580.081,-54.7875,-583.018	1/1:178:0,177,0:0:0:177,0:6285,0:-565.467,-53.2823,0,-565.467,-53.2823,-565.467	1/2:159:0,61,98:0:0:61,98:2160,3335:-446.828,-270.872,-252.509,-176.305,0,-146.804	1/1:47:0,47,0:0:0:47,0:1673,0:-150.798,-14.1484,0,-150.798,-14.1484,-150.798	1/2:87:0,62,25:0:0:62,25:2220,865:-251.688,-70.6371,-51.9732,-181.401,0,-173.875	1/1:67:0,67,0:0:0:67,0:2377,0:-214.187,-20.169,0,-214.187,-20.169,-214.187	1/2:336:0,178,157:0:0:178,157:6351,5355:-951.848,-434.097,-380.514,-517.759,0,-470.497	1/2:203:0,129,74:0:0:129,74:4590,2518:-578.676,-204.594,-165.761,-374.429,0,-352.152	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/1:296:0,293,2:0:0:293,2:10402,72:-935.665,-88.2018,0,-929.79,-82.3671,-929.188	1/1:127:0,127,0:0:0:127,0:4528,0:-407.69,-38.2308,0,-407.69,-38.2308,-407.69	1/2:96:0,61,34:0:0:61,34:2179,1132:-269.284,-91.6124,-73.2496,-177.683,0,-167.448	1/2:16:0,10,6:0:0:10,6:360,216:-47.3585,-17.9843,-14.974,-29.734,0,-27.9278	1/1:26:0,26,0:0:0:26,0:932,0:-84.141,-7.82678,0,-84.141,-7.82678,-84.141	1/2:13:0,10,3:0:0:10,3:360,108:-38.5463,-9.17208,-6.16178,-29.734,0,-28.8309	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:13:0,13,0:0:0:13,0:457,0:-41.4626,-3.91339,0,-41.4626,-3.91339,-41.4626	1/1:160:0,160,0:0:0:160,0:5738,0:-516.531,-48.1648,0,-516.531,-48.1648,-516.531	1/2:168:0,81,86:0:0:81,86:2896,2915:-472.504,-236.359,-211.976,-236.152,0,-210.264	1/2:52:0,37,15:0:0:37,15:1324,511:-149.775,-41.7967,-30.6585,-108.324,0,-103.809	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:128:0,79,49:0:0:79,49:2844,1729:-373.074,-141.014,-117.232,-232.416,0,-217.665	1/2:42:0,16,25:0:0:16,25:568,877:-117.644,-71.3618,-66.5454,-46.2759,0,-38.7501	1/2:153:0,89,64:0:0:89,64:3165,2157:-433.06,-175.122,-148.33,-258.283,0,-239.017	1/2:46:0,23,23:0:0:23,23:824,807:-133.231,-66.0254,-59.1017,-67.5596,0,-60.6359	1/1:40:0,40,0:0:0:40,0:1432,0:-129.119,-12.0412,0,-129.119,-12.0412,-129.119	1/2:91:0,56,35:0:0:56,35:2008,1146:-256.634,-92.8379,-75.9802,-164.136,0,-153.6	1/2:146:0,94,52:0:0:94,52:3333,1726:-411.475,-139.923,-111.627,-271.892,0,-256.238	1/2:189:0,116,73:0:0:116,73:4105,2505:-538.095,-203.725,-168.805,-334.717,0,-312.742	1/1:144:0,144,0:0:0:144,0:5148,0:-463.462,-43.3483,0,-463.462,-43.3483,-463.462	1/1:104:0,104,0:0:0:104,0:3737,0:-336.47,-31.3071,0,-336.47,-31.3071,-336.47	1/1:187:0,186,0:0:0:186,0:6642,0:-597.647,-55.9916,0,-597.647,-55.9916,-597.647	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:130:0,66,63:0:0:66,63:2368,2085:-361.755,-168.59,-148.722,-193.15,0,-174.185	1/2:54:0,37,17:0:0:37,17:1332,559:-154.209,-45.5033,-34.3652,-109.044,0,-103.927	1/2:26:0,15,11:0:0:15,11:526,372:-73.3044,-30.493,-25.9775,-43.1548,0,-39.8435	1/2:139:0,91,48:0:0:91,48:3240,1622:-395.877,-131.806,-104.412,-264.415,0,-249.966	1/2:85:0,53,32:0:0:53,32:1877,1080: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chr08	2180520	.	C	T	17813.1	PASS	AB=0.464723;ABP=28.5955;AC=36;AF=0.191489;AN=188;AO=1110;CIGAR=1X;DP=6281;DPB=6281;DPRA=1.17896;EPP=2413.34;EPPR=11229.5;GTI=3;LEN=1;MEANALT=1;MQM=59.9396;MQMR=59.9954;NS=94;NUMALT=1;ODDS=0.0196122;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39623;QR=184354;RO=5170;RPL=0;RPP=2413.34;RPPR=11229.5;RPR=1110;RUN=1;SAF=0;SAP=2413.34;SAR=1110;SRF=0;SRP=11229.5;SRR=5170;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/1:109:57,52:57:2035:52:1852:-134.148,0,-150.609	0/0:132:132,0:132:4681:0:0:0,-39.736,-421.451	0/1:28:17,11:17:597:11:396:-27.5539,0,-45.6273	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	0/0:77:77,0:77:2749:0:0:0,-23.1793,-247.651	0/0:117:117,0:117:4170:0:0:0,-35.2205,-375.48	0/0:101:101,0:101:3601:0:0:0,-30.404,-324.296	0/0:82:82,0:82:2923:0:0:0,-24.6845,-263.287	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:111:111,0:111:3974:0:0:0,-33.4143,-357.849	0/0:153:153,0:153:5477:0:0:0,-46.0576,-493.055	0/1:55:8,47:8:284:47:1688:-135.65,0,-9.3467	0/0:101:100,1:100:3568:1:36:0,-26.8083,-317.733	0/1:74:37,37:37:1309:37:1316:-96.4656,0,-95.8333	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:207:103,104:103:3668:104:3713:-272.057,0,-268.009	0/1:214:134,80:134:4801:80:2856:-192.63,0,-367.823	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:170:170,0:170:6064:0:0:0,-51.1751,-545.863	0/0:104:100,4:100:3567:4:140:0,-18.3625,-308.294	0/1:80:52,28:52:1859:28:995:-65.7806,0,-143.506	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:20:17,3:17:612:3:108:-4.05457,0,-49.3928	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:95:95,0:95:3383:0:0:0,-28.5978,-304.684	0/1:118:63,55:63:2252:55:1961:-141.242,0,-167.422	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:110:57,53:57:2003:53:1891:-137.355,0,-147.425	0/1:26:8,18:8:288:18:640:-50.1025,0,-18.4406	0/1:74:43,31:43:1540:31:1097:-76.7579,0,-116.617	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/1:90:57,33:57:2040:33:1188:-80.1359,0,-156.779	0/1:62:34,28:34:1224:28:1004:-72.012,0,-91.8032	0/1:101:67,34:67:2370:34:1205:-78.3499,0,-183.151	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:115:114,0:114:4046:0:0:0,-34.3174,-363.968	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.809	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:92:51,41:51:1805:41:1460:-104.001,0,-135.035	0/1:50:29,21:29:1040:21:748:-52.5938,0,-78.8629	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:94:39,55:39:1349:55:1959:-148.288,0,-93.4065	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:20:12,8:12:424:8:284:-19.8828,0,-32.4758	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.948	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:129:73,56:73:2576:56:2004:-141.801,0,-193.256	0/0:114:114,0:114:4083:0:0:0,-34.3174,-367.655	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:102:99,3:99:3509:3:100:0,-21.3746,-306.688	0/1:153:67,86:67:2400:86:3069:-230.38,0,-170.199	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:110:110,0:110:3929:0:0:0,-33.1133,-353.801	0/1:91:53,38:53:1891:38:1356:-94.9468,0,-143.074	0/0:183:183,0:183:6493:0:0:0,-55.0885,-584.455	0/0:111:111,0:111:3968:0:0:0,-33.4143,-357.312	0/0:54:54,0:54:1929:0:0:0,-16.2556,-173.885	0/0:74:74,0:74:2612:0:0:0,-22.2762,-235.327	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.037	0/1:55:31,24:31:1112:24:849:-60.163,0,-83.8347	0/0:245:244,1:244:8684:1:36:0,-70.1541,-777.954	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	0/0:77:76,1:76:2715:1:36:0,-19.581,-240.995	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0973	0/1:35:15,20:15:540:20:712:-53.8706,0,-38.4005	0/0:60:60,0:60:2147:0:0:0,-18.0618,-193.497	0/1:29:15,14:15:536:14:504:-36.9682,0,-39.8449	0/1:69:40,29:40:1436:29:1044:-73.5037,0,-108.767	0/1:30:6,24:6:216:24:864:-69.0517,0,-10.7596	0/0:101:101,0:101:3574:0:0:0,-30.404,-321.865	0/0:55:55,0:55:1946:0:0:0,-16.5566,-175.415
chr08	2230324	.	C	T	191495	PASS	AB=0.532026;ABP=25.264;AC=152;AF=0.808511;AN=188;AO=6923;CIGAR=1X;DP=8107;DPB=8107;DPRA=87.1613;EPP=385.998;EPPR=99.4321;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9819;MQMR=59.9661;NS=94;NUMALT=1;ODDS=1.30269;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245639;QR=41507;RO=1181;RPL=6905;RPP=14880.2;RPPR=2558.84;RPR=18;RUN=1;SAF=2891;SAP=411.359;SAR=4032;SRF=475;SRP=101.124;SRR=706;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1368:-123.417,-11.7402,0	1/1:136:0,136:0:0:136:4822:-434.138,-40.9401,0	0/1:129:56,73:56:1955:73:2620:-197.214,0,-137.387	1/1:144:0,144:0:0:144:5084:-457.706,-43.3483,0	0/1:53:17,36:17:580:36:1264:-98.1052,0,-36.5648	0/1:35:6,29:6:201:29:1023:-81.8451,0,-7.88099	1/1:93:0,93:0:0:93:3320:-299.019,-27.9958,0	1/1:167:0,167:0:0:167:5887:-529.944,-50.272,0	1/1:80:0,80:0:0:80:2818:-253.859,-24.0824,0	1/1:81:0,81:0:0:81:2859:-257.53,-24.3834,0	1/1:101:0,101:0:0:101:3599:-323.986,-30.404,0	1/1:110:0,110:0:0:110:3875:-348.947,-33.1133,0	1/1:131:0,131:0:0:131:4653:-418.933,-39.4349,0	1/1:172:0,172:0:0:172:6108:-549.822,-51.7772,0	1/1:99:0,99:0:0:99:3481:-313.502,-29.802,0	1/1:97:0,97:0:0:97:3450:-310.713,-29.1999,0	1/1:162:0,162:0:0:162:5735:-516.25,-48.7669,0	1/1:130:1,129:1:36:129:4587:-409.398,-35.5356,0	1/1:74:0,74:0:0:74:2644:-238.193,-22.2762,0	1/1:149:0,149:0:0:149:5337:-480.463,-44.8535,0	1/1:104:0,104:0:0:104:3704:-333.564,-31.3071,0	0/1:24:13,11:13:455:11:392:-28.3953,0,-34.0572	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:83:37,46:37:1276:46:1619:-121.013,0,-90.1494	1/1:63:0,63:0:0:63:2215:-199.613,-18.9649,0	0/1:168:62,106:62:2193:106:3773:-289.196,0,-147.061	0/1:126:61,65:61:2136:65:2266:-166.268,0,-154.577	1/1:49:0,49:0:0:49:1741:-156.973,-14.7505,0	1/1:139:0,139:0:0:139:4970:-447.449,-41.8432,0	1/1:65:5,60:5:172:60:2125:-175.699,-3.74898,0	0/1:72:31,41:31:1097:41:1468:-110.742,0,-77.3639	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	1/1:274:0,274:0:0:274:9727:-875.385,-82.4822,0	0/1:60:31,29:31:1089:29:1040:-75.8526,0,-80.2552	0/1:111:68,43:68:2410:43:1532:-104.759,0,-183.696	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:107:46,61:46:1620:61:2148:-161.375,0,-113.876	0/1:82:42,40:42:1454:40:1427:-104.042,0,-106.466	0/1:93:42,51:42:1472:51:1820:-136.085,0,-104.776	0/1:95:49,46:49:1732:46:1623:-117.714,0,-127.567	1/1:91:0,91:0:0:91:3243:-292.092,-27.3937,0	0/1:47:18,29:18:621:29:998:-75.9773,0,-42.0628	0/1:62:29,33:29:1035:33:1188:-88.5647,0,-74.7992	0/1:96:28,68:28:983:68:2440:-190.956,0,-59.8837	1/1:47:0,47:0:0:47:1666:-150.226,-14.1484,0	1/1:163:0,163:0:0:163:5766:-519.057,-49.0679,0	1/1:77:0,77:0:0:77:2696:-242.882,-23.1793,0	0/1:5:3,2:3:93:2:72:-5.33157,0,-7.17158	0/1:85:38,47:38:1345:47:1653:-123.469,0,-95.7606	0/1:42:13,29:13:455:29:1017:-79.1969,0,-28.6387	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:65:32,33:32:1121:33:1184:-87.3014,0,-81.6288	0/1:18:9,9:9:324:9:303:-22.1767,0,-24.0873	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:9:5,4:5:171:4:144:-10.6043,0,-13.0162	1/1:75:0,75:0:0:75:2672:-240.726,-22.5773,0	1/1:157:1,156:1:36:156:5528:-494.047,-43.6634,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:48:21,27:21:733:27:941:-70.5522,0,-51.8402	1/1:96:0,96:0:0:96:3357:-302.346,-28.8989,0	1/1:72:0,72:0:0:72:2573:-231.819,-21.6742,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:91:4,87:4:144:87:3076:-263.756,-14.0801,0	0/1:79:40,38:40:1418:38:1368:-99.5807,0,-104.076	1/1:50:0,49:0:0:49:1744:-156.885,-14.7505,0	1/1:70:0,70:0:0:70:2473:-222.823,-21.0721,0	1/1:162:0,162:0:0:162:5737:-516.45,-48.7669,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:59:0,59:0:0:59:2067:-186.297,-17.7608,0	0/1:49:26,23:26:905:23:811:-58.5595,0,-67.0039	1/1:160:0,160:0:0:160:5678:-511.141,-48.1648,0	1/1:130:0,130:0:0:130:4614:-415.424,-39.1339,0	1/1:122:0,122:0:0:122:4318:-388.796,-36.7257,0	1/1:103:0,103:0:0:103:3667:-330.233,-31.0061,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:103:0,103:0:0:103:3680:-331.403,-31.0061,0	0/1:93:43,50:43:1520:50:1783:-132.756,0,-109.097	1/1:146:2,144:2:72:144:5143:-456.174,-37.1137,0	1/1:134:0,134:0:0:134:4744:-427.119,-40.338,0	1/1:93:0,93:0:0:93:3298:-297.04,-27.9958,0	0/1:118:61,56:61:2155:56:1987:-143.563,0,-158.676	1/1:207:0,207:0:0:207:7300:-657.059,-62.3132,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:94:46,48:46:1607:48:1711:-125.978,0,-116.622	1/1:92:0,92:0:0:92:3263:-293.888,-27.6948,0	0/1:101:52,49:52:1847:49:1733:-125.849,0,-136.105	0/1:145:71,74:71:2496:74:2637:-193.926,0,-181.24	0/1:85:59,26:59:2080:26:928:-58.2507,0,-161.881	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	1/1:145:0,145:0:0:145:5177:-466.07,-43.6494,0
chr08	2230331	.	A	T	25114.9	PASS	AB=0.469919;ABP=22.3452;AC=36;AF=0.191489;AN=188;AO=1172;CIGAR=1X;DP=7989;DPB=7989;DPRA=0.885379;EPP=102.735;EPPR=386.454;GTI=1;LEN=1;MEANALT=1.04762;MQM=59.9744;MQMR=59.9812;NS=94;NUMALT=1;ODDS=3.99955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41475;QR=243315;RO=6815;RPL=1172;RPP=2547.98;RPPR=14775.5;RPR=0;RUN=1;SAF=470;SAP=102.735;SAR=702;SRF=2856;SRP=390.66;SRR=3959;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:132:132,0:132:4725:0:0:0,-39.736,-425.407	0/1:125:71,54:71:2543:54:1919:-135.358,0,-191.491	0/0:145:145,0:145:5171:0:0:0,-43.6493,-465.532	0/1:52:36,16:36:1281:16:572:-36.1599,0,-99.9377	0/1:35:29,6:29:1036:6:216:-9.25446,0,-83.0179	0/0:92:92,0:92:3282:0:0:0,-27.6948,-295.599	0/0:163:163,0:163:5788:0:0:0,-49.0679,-521.038	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.507	0/0:102:102,0:102:3629:0:0:0,-30.7051,-326.796	0/0:113:113,0:113:3986:0:0:0,-34.0164,-358.932	0/0:128:128,0:128:4567:0:0:0,-38.5318,-411.197	0/0:167:167,0:167:5966:0:0:0,-50.272,-537.047	0/0:98:98,0:98:3502:0:0:0,-29.5009,-315.39	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:157:157,0:157:5599:0:0:0,-47.2617,-503.8	0/0:128:127,1:127:4536:1:36:0,-34.9336,-404.81	0/0:75:74,1:74:2644:1:21:0,-20.4778,-236.107	0/0:146:146,0:146:5202:0:0:0,-43.9504,-468.321	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/1:27:11,16:11:388:16:568:-43.3241,0,-27.1296	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:81:45,36:45:1600:36:1280:-91.1198,0,-119.907	0/0:62:62,0:62:2206:0:0:0,-18.6639,-198.804	0/1:168:105,63:105:3735:63:2256:-152.73,0,-285.779	0/1:123:61,62:61:2166:62:2173:-158.806,0,-158.171	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:133:133,0:133:4736:0:0:0,-40.037,-426.399	0/0:65:60,5:60:2152:5:176:0,-3.38193,-177.762	0/1:70:40,30:40:1424:30:1057:-74.3669,0,-107.385	0/1:9:2,7:2:72:7:229:-18.2203,0,-4.12745	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/0:273:273,0:273:9762:0:0:0,-82.1812,-878.527	0/1:59:28,30:28:1004:30:1068:-78.6045,0,-72.8563	0/1:110:43,67:43:1544:67:2400:-183.144,0,-106.14	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:104:59,45:59:2086:45:1595:-112.532,0,-156.702	0/1:81:40,41:40:1415:41:1455:-106.862,0,-103.263	0/1:92:53,39:53:1891:39:1368:-95.7237,0,-142.773	0/1:95:45,50:45:1599:50:1758:-129.903,0,-115.557	0/0:88:88,0:88:3143:0:0:0,-26.4906,-283.095	0/1:47:29,18:29:1012:18:616:-41.6105,0,-77.2401	0/1:61:31,29:31:1097:29:1036:-75.1324,0,-80.6166	0/1:93:67,26:67:2408:26:916:-54.7607,0,-188.98	0/0:45:45,0:45:1596:0:0:0,-13.5463,-143.927	0/0:158:158,0:158:5664:0:0:0,-47.5627,-509.879	0/0:77:77,0:77:2747:0:0:0,-23.1793,-247.472	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:81:46,35:46:1644:35:1211:-84.906,0,-123.865	0/1:42:28,14:28:1004:14:488:-31.6072,0,-78.0326	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:65:34,31:34:1211:31:1116:-81.1847,0,-89.7286	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.5363	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.593	0/0:156:155,1:155:5547:1:36:0,-43.3624,-495.751	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:49:27,22:27:956:22:784:-56.1334,0,-71.6053	0/0:95:95,0:95:3394:0:0:0,-28.5978,-305.674	0/0:71:71,0:71:2524:0:0:0,-21.3731,-227.41	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:90:86,4:86:3079:4:131:0,-14.9801,-265.223	0/1:75:34,41:34:1220:41:1445:-107.766,0,-87.5296	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:68:68,0:68:2401:0:0:0,-20.47,-216.346	0/0:158:158,0:158:5637:0:0:0,-47.5627,-507.415	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:48:21,27:21:748:27:955:-71.8144,0,-53.1959	0/0:156:156,0:156:5588:0:0:0,-46.9607,-503.042	0/0:125:125,0:125:4476:0:0:0,-37.6287,-403.009	0/0:112:112,0:112:3984:0:0:0,-33.7154,-358.75	0/0:105:105,0:105:3743:0:0:0,-31.6081,-337.071	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:100:100,0:100:3600:0:0:0,-30.103,-324.205	0/1:92:48,44:48:1712:44:1554:-112.455,0,-126.671	0/0:145:143,2:143:5114:2:72:0,-36.8126,-453.565	0/0:130:130,0:130:4620:0:0:0,-39.1339,-415.964	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:116:55,61:55:1960:61:2159:-159.657,0,-141.756	0/0:211:210,1:210:7511:1:36:0,-59.9191,-672.434	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:91:47,44:47:1692:44:1559:-113.207,0,-125.173	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/1:101:48,53:48:1712:53:1876:-138.712,0,-123.962	0/1:145:74,71:74:2655:71:2519:-183.312,0,-195.546	0/1:84:26,58:26:932:58:2075:-161.733,0,-58.9123	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:143:143,0:143:5107:0:0:0,-43.0473,-459.774
chr08	2241709	.	TTCTC	GTCTT,TTCTT	241024	PASS	AB=0.506341,0.491545;ABP=4.49739,5.65401;AC=153,35;AF=0.81383,0.18617;AN=188;AO=9043,2121;CIGAR=1X3M1X,4M1X;DP=11211;DPB=11211;DPRA=0,1.77706;EPP=19578.9,4574.03;EPPR=11.6962;GTI=0;LEN=5,1;MEANALT=1.92553,2.36;MQM=59.9356,60;MQMR=60;NS=94;NUMALT=2;ODDS=2.49809;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=318687,75900;QR=141;RO=4;RPL=9035,2117;RPP=19570.2,4574.03;RPPR=11.6962;RPR=8,4;RUN=1,1;SAF=1,0;SAP=19631,4608.7;SAR=9042,2121;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,48,0:0:0:48,0:1692,0:-152.264,-14.4494,0,-152.264,-14.4494,-152.264	1/1:79:0,79,0:0:0:79,0:2736,0:-246.484,-23.7814,0,-246.484,-23.7814,-246.484	1/2:152:0,87,65:0:0:87,65:3057,2328:-439.031,-190.213,-164.023,-249.173,0,-229.606	1/1:300:0,298,1:0:0:298,1:10497,32:-944.372,-89.7069,0,-941.794,-87.1038,-941.493	1/2:38:0,20,18:0:0:20,18:717,640:-110.992,-52.5108,-46.4902,-58.8376,0,-53.4191	1/2:81:0,47,34:0:0:47,34:1660,1224:-235.413,-100.232,-86.0836,-135.538,0,-125.303	1/1:132:0,130,0:0:0:130,0:4560,0:-410.246,-39.1339,0,-410.246,-39.1339,-410.246	1/1:170:0,166,1:0:0:166,1:5785,32:-520.44,-49.971,0,-517.861,-47.3984,-517.56	1/1:166:0,162,0:0:0:162,0:5676,0:-510.607,-48.7669,0,-510.607,-48.7669,-510.607	1/1:126:0,126,0:0:0:126,0:4438,0:-399.597,-37.9298,0,-399.597,-37.9298,-399.597	1/1:66:0,66,0:0:0:66,0:2319,0:-208.97,-19.868,0,-208.97,-19.868,-208.97	1/1:112:0,111,0:0:0:111,0:3938,0:-354.254,-33.4143,0,-354.254,-33.4143,-354.254	1/1:63:1,62,0:1:33:62,0:2194,0:-194.427,-15.6658,0,-194.728,-18.6639,-197.396	1/1:122:0,121,0:0:0:121,0:4278,0:-384.837,-36.4246,0,-384.837,-36.4246,-384.837	1/1:92:1,91,0:1:36:91,0:3217,0:-286.127,-24.0965,0,-286.428,-27.3937,-289.366	1/1:72:0,72,0:0:0:72,0:2549,0:-229.66,-21.6742,0,-229.66,-21.6742,-229.66	1/1:44:0,43,0:0:0:43,0:1522,0:-136.913,-12.9443,0,-136.913,-12.9443,-136.913	1/1:46:0,46,0:0:0:46,0:1640,0:-147.889,-13.8474,0,-147.889,-13.8474,-147.889	1/1:40:0,40,0:0:0:40,0:1420,0:-128.097,-12.0412,0,-128.097,-12.0412,-128.097	1/1:182:0,182,0:0:0:182,0:6438,0:-579.477,-54.7875,0,-579.477,-54.7875,-579.477	1/1:263:0,259,3:0:0:259,3:9091,108:-817.841,-77.9668,0,-809.028,-69.1171,-808.125	1/2:120:0,53,67:0:0:53,67:1864,2389:-346.826,-195.097,-179.142,-152.083,0,-131.914	1/1:235:0,232,2:0:0:232,2:8132,72:-731.555,-69.839,0,-725.68,-63.9575,-725.078	1/2:59:0,31,28:0:0:31,28:1103,995:-171.329,-81.4352,-72.1032,-90.2488,0,-81.82	1/1:85:0,85,0:0:0:85,0:2999,0:-270.144,-25.5876,0,-270.144,-25.5876,-270.144	1/2:376:0,194,180:0:0:194,180:6846,6435:-1082.2,-524.735,-466.336,-557.504,0,-503.318	1/2:359:0,189,170:0:0:189,170:6684,6084:-1040.87,-496.486,-439.591,-544.739,0,-493.563	1/1:31:0,31,0:0:0:31,0:1094,0:-98.7699,-9.33193,0,-98.7699,-9.33193,-98.7699	1/1:350:1,346,2:1:36:346,2:12187,68:-1093.11,-101.213,0,-1087.9,-98.6431,-1090.23	1/1:202:0,193,7:0:0:193,7:6792,252:-611.002,-58.0988,0,-590.44,-37.5369,-588.333	1/2:168:0,89,79:0:0:89,79:3136,2829:-486.386,-231.065,-204.274,-255.676,0,-231.895	1/2:15:0,10,5:0:0:10,5:355,180:-43.9692,-15.0469,-12.0366,-29.2804,0,-27.7753	1/1:26:0,26,0:0:0:26,0:918,0:-82.9364,-7.82678,0,-82.9364,-7.82678,-82.9364	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:12:0,12,0:0:0:12,0:430,0:-39.0402,-3.61236,0,-39.0402,-3.61236,-39.0402	1/1:38:0,38,0:0:0:38,0:1338,0:-120.72,-11.4391,0,-120.72,-11.4391,-120.72	1/1:153:0,152,0:0:0:152,0:5393,0:-485.143,-45.7566,0,-485.143,-45.7566,-485.143	1/2:160:1,93,66:1:36:93,66:3265,2376:-456.352,-190.932,-165.874,-262.78,0,-245.849	1/2:41:0,21,20:0:0:21,20:752,709:-119.443,-58.1141,-51.7925,-61.6848,0,-55.6642	1/1:7:0,7,0:0:0:7,0:250,0:-22.8468,-2.10721,0,-22.8468,-2.10721,-22.8468	1/2:151:0,76,75:0:0:76,75:2677,2681:-436.899,-218.956,-196.078,-218.297,0,-195.72	1/2:27:0,13,14:0:0:13,14:468,504:-79.6701,-41.4837,-37.5703,-38.5463,0,-34.3318	1/2:182:0,84,98:0:0:84,98:2967,3508:-528.045,-286.429,-261.143,-241.971,0,-212.47	1/2:63:0,37,26:0:0:37,26:1316,928:-183.258,-76.0115,-64.8734,-107.603,0,-99.776	1/1:58:0,58,0:0:0:58,0:2024,0:-182.432,-17.4597,0,-182.432,-17.4597,-182.432	1/2:143:0,79,64:0:0:79,64:2795,2281:-413.941,-186.284,-162.503,-228.011,0,-208.745	1/2:158:0,93,65:0:0:93,65:3275,2319:-456.006,-189.403,-161.407,-266.958,0,-247.391	1/2:253:0,129,124:0:0:129,124:4479,4443:-726.813,-362.712,-323.879,-364.454,0,-327.126	1/1:57:0,57,0:0:0:57,0:2003,0:-180.538,-17.1587,0,-180.538,-17.1587,-180.538	1/1:191:0,190,0:0:0:190,0:6689,0:-601.787,-57.1957,0,-601.787,-57.1957,-601.787	1/1:183:0,181,0:0:0:181,0:6435,0:-578.972,-54.4864,0,-578.972,-54.4864,-578.972	1/2:10:0,4,6:0:0:4,6:141,216:-29.4618,-17.9843,-16.7802,-11.8328,0,-10.0266	1/2:157:0,73,83:0:0:73,83:2568,2980:-452.126,-243.087,-221.111,-209.035,0,-184.05	1/2:109:0,58,51:0:0:58,51:2058,1832:-317.425,-149.808,-132.349,-167.974,0,-152.621	1/2:15:0,9,6:0:0:9,6:319,216:-43.969,-17.9843,-15.2751,-26.3423,0,-24.5361	1/2:189:0,84,103:0:0:84,103:2949,3688:-540.786,-300.781,-275.495,-240.023,0,-209.017	1/2:41:0,17,2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chr08	2246823	.	C	G	37011.4	PASS	AB=0.543068;ABP=66.2309;AC=36;AF=0.191489;AN=188;AO=2146;CIGAR=1X;DP=10552;DPB=10552;DPRA=0.964411;EPP=4662.99;EPPR=18249.9;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9974;NS=94;NUMALT=1;ODDS=0.43897;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76720;QR=300251;RO=8403;RPL=0;RPP=4662.99;RPPR=18249.9;RPR=2146;RUN=1;SAF=2146;SAP=4662.99;SAR=0;SRF=8403;SRP=18249.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.031	0/0:231:231,0:231:8229:0:0:0,-69.5379,-740.626	0/1:118:68,50:68:2432:50:1792:-126.041,0,-183.614	0/0:210:210,0:210:7520:0:0:0,-63.2163,-676.841	0/1:68:24,44:24:852:44:1565:-120.67,0,-56.5303	0/1:90:63,27:63:2244:27:972:-60.7052,0,-175.131	0/0:179:179,0:179:6392:0:0:0,-53.8844,-575.371	0/0:171:171,0:171:6092:0:0:0,-51.4761,-548.386	0/0:135:135,0:135:4820:0:0:0,-40.639,-433.957	0/0:163:163,0:163:5852:0:0:0,-49.0679,-526.79	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.249	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:102:102,0:102:3647:0:0:0,-30.7051,-328.434	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:217:217,0:217:7748:0:0:0,-65.3235,-697.355	0/0:242:242,0:242:8636:0:0:0,-72.8493,-777.239	0/1:90:30,60:30:1072:60:2145:-166.223,0,-69.6998	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.607	0/1:137:54,83:54:1920:83:2961:-225.481,0,-131.836	0/0:121:121,0:121:4348:0:0:0,-36.4246,-391.493	0/1:352:140,212:140:4996:212:7581:-576.366,0,-343.827	0/1:302:115,187:115:4108:187:6697:-511.893,0,-278.995	0/0:51:51,0:51:1804:0:0:0,-15.3525,-162.642	0/0:259:258,0:258:9240:0:0:0,-77.6657,-831.209	0/0:121:118,3:118:4232:3:108:0,-26.3495,-370.984	0/1:155:67,88:67:2408:88:3145:-236.614,0,-170.316	0/1:26:6,20:6:212:20:720:-57.302,0,-11.598	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:231:231,0:231:8268:0:0:0,-69.5379,-744.13	0/1:119:52,67:52:1864:67:2378:-178.452,0,-132.217	0/1:76:28,48:28:1000:48:1724:-132.567,0,-67.4371	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:136:60,76:60:2140:76:2709:-203.113,0,-151.928	0/1:43:23,20:23:824:20:720:-52.1845,0,-61.539	0/1:233:111,122:111:3968:122:4379:-324.142,0,-287.172	0/1:118:63,55:63:2237:55:1976:-142.593,0,-166.071	0/0:84:84,0:84:2988:0:0:0,-25.2865,-269.154	0/1:114:77,37:77:2760:37:1324:-85.1447,0,-214.268	0/1:130:56,74:56:2004:74:2648:-199.433,0,-141.5	0/1:173:103,70:103:3680:70:2516:-174.613,0,-279.325	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.604	0/0:146:146,0:146:5232:0:0:0,-43.9504,-471.017	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.218	0/1:13:2,11:2:72:11:379:-30.526,0,-2.92333	0/1:119:51,68:51:1832:68:2444:-184.392,0,-129.338	0/1:29:14,15:14:496:15:521:-38.4865,0,-36.2444	0/1:23:8,15:8:284:15:536:-41.6511,0,-18.9797	0/1:121:52,69:52:1864:69:2467:-185.858,0,-131.615	0/1:50:23,27:23:820:27:964:-72.0253,0,-59.071	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:20:5,15:5:180:15:525:-41.5575,0,-10.5315	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:112:110,2:110:3932:2:72:0,-26.8786,-347.236	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:216:115,101:115:4104:101:3624:-261.342,0,-304.524	0/0:262:262,0:262:9357:0:0:0,-78.8699,-842.096	0/0:83:82,0:82:2940:0:0:0,-24.6845,-264.474	0/0:96:95,1:95:3384:1:36:0,-25.3006,-301.179	0/0:228:228,0:228:8132:0:0:0,-68.6348,-731.9	0/1:145:60,85:60:2141:85:3022:-228.559,0,-149.307	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:82:81,0:81:2896:0:0:0,-24.3834,-260.516	0/0:122:122,0:122:4348:0:0:0,-36.7257,-391.497	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/1:86:54,32:54:1932:32:1129:-76.0278,0,-148.268	0/0:229:229,0:229:8172:0:0:0,-68.9359,-735.498	0/0:123:123,0:123:4396:0:0:0,-37.0267,-395.814	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:144:135,9:135:4832:9:320:0,-14.206,-405.892	0/1:29:16,13:16:572:13:464:-33.3676,0,-43.0836	0/0:107:107,0:107:3816:0:0:0,-32.2102,-343.639	0/1:98:48,50:48:1708:50:1781:-131.07,0,-124.505	0/0:240:240,0:240:8573:0:0:0,-72.2472,-771.568	0/0:107:107,0:107:3824:0:0:0,-32.2102,-344.358	0/0:81:81,0:81:2884:0:0:0,-24.3834,-259.798	0/1:140:57,83:57:2028:83:2976:-225.928,0,-140.649	0/0:189:189,0:189:6725:0:0:0,-56.8947,-605.329	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/1:91:60,31:60:2139:31:1116:-73.358,0,-165.384	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.873	0/1:49:18,31:18:640:31:1108:-85.2805,0,-43.1788	0/1:90:26,64:26:924:64:2284:-178.729,0,-56.385	0/1:116:43,73:43:1548:73:2608:-200.049,0,-104.694	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:126:126,0:126:4496:0:0:0,-37.9298,-404.81
chr08	2281388	.	A	T	125469	PASS	AB=0.482895;ABP=10.0674;AC=150;AF=0.806452;AN=186;AO=5813;CIGAR=1X;DP=7268;DPB=7268;DPRA=26.3225;EPP=12625.8;EPPR=3151.65;GTI=1;LEN=1;MEANALT=1.05435;MQM=59.9938;MQMR=59.9814;NS=93;NUMALT=1;ODDS=3.19053;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207800;QR=51855;RO=1450;RPL=0;RPP=12625.8;RPPR=3151.65;RPR=5813;RUN=1;SAF=5813;SAP=12625.8;SAR=0;SRF=1450;SRP=3151.65;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:158:0,158:0:0:158:5656:-509.16,-47.5627,0	0/1:142:62,80:62:2232:80:2860:-214.892,0,-158.397	1/1:187:0,187:0:0:187:6655:-599.027,-56.2926,0	0/1:42:22,20:22:773:20:716:-52.1245,0,-57.2462	0/1:52:23,29:23:828:29:1021:-76.5467,0,-59.1906	1/1:116:0,116:0:0:116:4118:-370.804,-34.9195,0	1/1:81:0,81:0:0:81:2916:-262.674,-24.3834,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:89:0,89:0:0:89:3158:-284.443,-26.7917,0	1/1:38:0,38:0:0:38:1355:-122.25,-11.4391,0	1/1:61:0,60:0:0:60:2156:-193.947,-18.0618,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:42:0,42:0:0:42:1502:-135.475,-12.6433,0	1/1:76:0,76:0:0:76:2716:-244.684,-22.8783,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:167:0,167:0:0:167:5984:-538.663,-50.272,0	1/1:96:0,96:0:0:96:3417:-307.743,-28.8989,0	0/1:63:41,22:41:1461:22:788:-52.2799,0,-112.819	1/1:49:1,48:1:36:48:1724:-151.847,-11.1522,0	0/1:67:32,35:32:1152:35:1248:-92.4559,0,-83.8211	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:187:98,89:98:3520:89:3196:-231.57,0,-260.716	0/1:102:45,57:45:1586:57:2048:-153.887,0,-112.321	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:244:0,243:0:0:243:8686:-781.371,-73.1503,0	1/1:122:3,119:3:108:119:4248:-372.423,-26.6505,0	0/1:92:36,55:36:1296:55:1979:-150.631,0,-89.1904	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:175:0,175:0:0:175:6282:-565.471,-52.6803,0	0/1:107:45,62:45:1616:62:2217:-167.582,0,-113.52	0/1:43:24,19:24:844:19:684:-48.946,0,-63.3346	.:.:.:.:.:.:.:.	0/1:187:105,82:105:3742:82:2936:-208.182,0,-280.685	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/1:123:68,55:68:2429:55:1972:-140.728,0,-181.409	0/1:76:46,30:46:1644:30:1072:-73.9142,0,-125.37	1/1:47:0,47:0:0:47:1679:-151.396,-14.1484,0	0/1:58:32,26:32:1140:26:921:-65.7455,0,-85.4495	0/1:80:37,43:37:1328:43:1529:-113.819,0,-95.7398	0/1:131:61,70:61:2158:70:2501:-185.906,0,-155.049	1/1:123:0,123:0:0:123:4367:-393.205,-37.0267,0	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0	1/1:127:1,126:1:36:126:4505:-402.019,-34.6325,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:127:68,59:68:2448:59:2124:-153.197,0,-182.343	0/1:42:27,15:27:968:15:515:-34.0302,0,-74.7941	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:100:56,44:56:1978:44:1564:-110.949,0,-148.188	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:97:0,97:0:0:97:3467:-312.242,-29.1999,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:237:116,121:116:4138:121:4324:-316.974,0,-301.257	1/1:69:0,69:0:0:69:2461:-221.743,-20.7711,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:56:0,56:0:0:56:1991:-179.463,-16.8577,0	1/1:103:1,102:1:36:102:3595:-320.157,-27.4078,0	0/1:131:78,53:78:2808:53:1904:-132.203,0,-213.524	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:63:2,61:2:72:61:2188:-190.349,-12.1282,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:123:0,122:0:0:122:4349:-391.225,-36.7257,0	0/1:89:41,48:41:1476:48:1724:-128.654,0,-106.345	1/1:84:0,84:0:0:84:3005:-270.68,-25.2865,0	1/1:167:0,167:0:0:167:5985:-538.753,-50.272,0	1/1:125:1,124:1:36:124:4391:-391.765,-34.0305,0	1/1:125:1,124:1:36:124:4440:-396.173,-34.0305,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:101:3,98:3:108:98:3520:-306.934,-20.3289,0	0/1:72:38,33:38:1353:33:1154:-82.4296,0,-100.336	1/1:141:0,141:0:0:141:5029:-452.757,-42.4452,0	1/1:84:0,84:0:0:84:3000:-270.232,-25.2865,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:76:43,33:43:1548:33:1188:-84.3503,0,-116.735	1/1:136:0,136:0:0:136:4880:-439.351,-40.9401,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:84:44,40:44:1576:40:1428:-103.531,0,-116.845	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	0/1:22:8,14:8:288:14:496:-38.3516,0,-19.6447	0/1:80:38,42:38:1368:42:1504:-111.572,0,-99.3384	0/1:66:45,21:45:1601:21:752:-48.1383,0,-124.51	1/1:130:0,130:0:0:130:4638:-417.582,-39.1339,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0
chr08	2285541	.	G	C	0	PASS	AB=0.265957;ABP=4430.6;AC=37;AF=0.196809;AN=188;AO=2536;CIGAR=1X;DP=21216;DPB=21216;DPRA=1.11405;EPP=5509.86;EPPR=40546.6;GTI=36;LEN=1;MEANALT=1.02174;MQM=17.7729;MQMR=19.41;NS=94;NUMALT=1;ODDS=37.4133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90787;QR=665243;RO=18675;RPL=0;RPP=5509.86;RPPR=40555.3;RPR=2536;RUN=1;SAF=2536;SAP=5509.86;SAR=0;SRF=18674;SRP=40546.6;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:188:148,40:148:5305:40:1432:-6.17104,0,-190.415	0/0:225:225,0:225:8009:0:0:0,-67.7317,-372.938	0/1:415:327,88:327:11657:88:3149:-8.40333,0,-413.744	0/0:413:412,1:412:14634:1:36:0,-123.227,-705.239	0/1:206:149,57:149:5296:57:2029:-25.858,0,-196.802	0/1:87:64,23:64:2304:23:805:-8.47686,0,-86.857	0/0:178:178,0:178:6279:0:0:0,-53.5833,-310.849	0/1:394:258,136:258:9193:136:4876:-95.5211,0,-314.353	0/0:327:327,0:327:11580:0:0:0,-98.4368,-564.838	0/0:177:177,0:177:6277:0:0:0,-53.2823,-296.319	0/0:119:119,0:119:4272:0:0:0,-35.8226,-195.539	0/0:240:240,0:240:8560:0:0:0,-72.2472,-404.834	0/0:188:188,0:188:6721:0:0:0,-56.5936,-324.73	0/0:82:82,0:82:2929:0:0:0,-24.6845,-137.812	0/0:183:183,0:183:6546:0:0:0,-55.0885,-302.825	0/0:112:112,0:112:4004:0:0:0,-33.7154,-194.155	0/0:63:63,0:63:2268:0:0:0,-18.9649,-107.373	0/0:69:69,0:69:2457:0:0:0,-20.7711,-121.39	0/0:56:56,0:56:2001:0:0:0,-16.8577,-96.4656	0/1:528:391,137:391:13972:137:4924:-53.2857,0,-482.285	0/1:474:343,131:343:12157:131:4696:-63.4756,0,-443.839	0/1:278:166,112:166:5900:112:4024:-90.8984,0,-203.266	0/0:323:322,1:322:11462:1:36:0,-95.538,-544.007	0/0:188:182,6:182:6513:6:216:0,-46.4809,-310.579	0/0:348:347,0:347:12331:0:0:0,-104.457,-580.179	0/1:586:441,145:441:15707:145:5192:-45.1383,0,-573.992	0/0:680:678,0:678:24227:0:0:0,-204.098,-1142.38	0/0:67:67,0:67:2382:0:0:0,-20.169,-108.817	0/1:642:515,127:515:18349:127:4564:-2.50422,0,-659.658	0/1:230:165,65:165:5905:65:2340:-32.5657,0,-202.511	0/0:213:213,0:213:7569:0:0:0,-64.1194,-353.495	0/0:16:13,3:13:468:3:108:0,-0.0713914,-17.3962	0/1:32:20,12:20:720:12:432:-8.83899,0,-25.9701	0/0:5:5,0:5:180:0:0:0,-1.50515,-10.2712	0/1:14:10,4:10:345:4:144:-3.81671,0,-14.3679	0/0:40:40,0:40:1432:0:0:0,-12.0412,-67.2784	0/1:465:367,98:367:13119:98:3501:-11.9,0,-467.26	0/1:334:270,64:270:9580:64:2287:-1.96486,0,-364.011	0/0:91:91,0:91:3268:0:0:0,-27.3937,-151.521	0/1:10:6,4:6:216:4:144:-3.26,0,-7.0322	0/0:295:295,0:295:10523:0:0:0,-88.8038,-496.771	0/0:82:82,0:82:2944:0:0:0,-24.6845,-137.422	0/0:475:475,0:475:16928:0:0:0,-142.989,-792.874	0/0:116:116,0:116:4130:0:0:0,-34.9195,-191.763	0/1:160:107,53:107:3794:53:1900:-37.2659,0,-135.459	0/1:302:207,95:207:7383:95:3385:-55.262,0,-261.265	0/0:304:304,0:304:10864:0:0:0,-91.5131,-513.009	0/0:407:407,0:407:14518:0:0:0,-122.519,-702.136	0/0:232:232,0:232:8267:0:0:0,-69.839,-396.067	0/0:268:268,0:268:9588:0:0:0,-80.676,-447.128	0/1:338:226,112:226:8048:112:3978:-76.6817,0,-281.323	0/1:19:14,5:14:492:5:180:-2.07593,0,-17.7331	0/0:388:388,0:388:13861:0:0:0,-116.8,-661.988	0/0:136:136,0:136:4831:0:0:0,-40.9401,-226.402	0/0:15:15,0:15:532:0:0:0,-4.51545,-25.3451	0/0:351:351,0:351:12521:0:0:0,-105.662,-588.167	0/0:141:141,0:141:4992:0:0:0,-42.4452,-245.524	0/0:20:17,3:17:593:3:108:0,-1.27551,-23.7685	0/1:34:25,9:25:885:9:324:-3.66131,0,-32.0637	0/0:195:195,0:195:6887:0:0:0,-58.7008,-327.953	0/1:168:133,35:133:4731:35:1252:-2.59555,0,-177.192	0/0:14:14,0:14:504:0:0:0,-4.21442,-23.7403	0/0:359:359,0:359:12786:0:0:0,-108.07,-615.22	0/1:390:298,91:298:10593:91:3272:-25.8784,0,-395.492	0/0:151:149,2:149:5318:2:72:0,-42.3296,-243.844	0/1:248:195,53:195:6936:53:1900:-10.8639,0,-257.38	0/1:373:301,72:301:10650:72:2580:-5.0529,0,-405.782	0/1:448:283,165:283:10141:165:5916:-118.926,0,-356.176	0/1:47:33,14:33:1173:14:504:-7.37396,0,-42.2078	0/1:163:122,41:122:4298:41:1476:-13.2775,0,-159.77	0/0:90:73,17:73:2620:17:612:0,-1.08429,-97.0328	0/1:53:38,15:38:1337:15:536:-7.08579,0,-45.0069	0/1:338:241,97:241:8546:97:3464:-48.2873,0,-316.273	0/1:226:163,63:163:5817:63:2260:-29.9145,0,-208.071	0/1:304:223,81:223:7886:81:2896:-33.4638,0,-293.83	0/0:512:512,0:512:18265:0:0:0,-154.127,-884.432	0/1:240:167,73:167:5917:73:2597:-41.7495,0,-202.068	0/1:260:197,63:197:7035:63:2268:-19.7056,0,-257.699	0/1:25:19,6:19:684:6:216:-1.79496,0,-25.7732	0/0:288:287,1:287:10233:1:21:0,-85.2133,-491.832	0/0:324:324,0:324:11552:0:0:0,-97.5337,-554.203	0/0:658:657,0:657:23334:0:0:0,-197.777,-1125	0/0:91:91,0:91:3227:0:0:0,-27.3937,-151.843	0/0:150:150,0:150:5365:0:0:0,-45.1545,-255.361	0/0:118:118,0:118:4195:0:0:0,-35.5215,-192.932	0/0:335:335,0:335:11949:0:0:0,-100.845,-564.919	0/0:62:62,0:62:2228:0:0:0,-18.6639,-103.407	0/0:160:133,27:133:4742:27:964:0,-7.09774,-178.359	0/0:165:165,0:165:5826:0:0:0,-49.6699,-287.557	0/0:54:54,0:54:1925:0:0:0,-16.2556,-88.2529	0/1:139:95,44:95:3362:44:1576:-28.769,0,-117.599	0/1:148:103,45:103:3689:45:1595:-25.6422,0,-122.669	0/0:315:315,0:315:11224:0:0:0,-94.8244,-544.185	0/0:236:236,0:236:8480:0:0:0,-71.0431,-407.04
chr08	2285555	.	C	T	2.86984e-12	PASS	AB=0.268852;ABP=4150.97;AC=40;AF=0.212766;AN=188;AO=2518;CIGAR=1X;DP=20975;DPB=20975;DPRA=0.992089;EPP=5418.79;EPPR=39795.7;GTI=39;LEN=1;MEANALT=1.05769;MQM=17.7724;MQMR=19.3833;NS=94;NUMALT=1;ODDS=47.0661;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90127;QR=658472;RO=18449;RPL=5;RPP=5427.43;RPPR=39804.4;RPR=2513;RUN=1;SAF=2517;SAP=5462.1;SAR=1;SRF=18448;SRP=40055.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:192:140,52:140:4998:52:1854:-24.6934,0,-178.415	0/1:222:150,72:150:5380:72:2582:-44.4108,0,-190.936	0/1:415:291,123:291:10368:123:4408:-67.6496,0,-352.79	0/0:411:411,0:411:14662:0:0:0,-123.723,-707.529	0/0:204:204,0:204:7268:0:0:0,-61.4101,-344.685	0/0:88:87,1:87:3112:1:36:0,-24.796,-146.109	0/0:178:178,0:178:6310:0:0:0,-53.5833,-312.223	0/0:392:333,59:333:11902:59:2120:0,-28.0326,-463.933	0/0:319:319,0:319:11391:0:0:0,-96.0286,-552.137	0/1:175:138,37:138:4909:37:1328:-5.54344,0,-184.433	0/1:114:80,34:80:2864:34:1224:-17.171,0,-101.824	0/0:238:238,0:238:8487:0:0:0,-71.6451,-402.42	0/0:188:187,0:187:6652:0:0:0,-56.2926,-321.57	0/1:84:56,28:56:2008:28:1004:-21.0209,0,-70.1536	0/1:182:131,51:131:4692:51:1836:-22.5561,0,-169.724	0/0:109:108,0:108:3859:0:0:0,-32.5112,-185.58	0/0:63:63,0:63:2230:0:0:0,-18.9649,-107.218	0/0:69:68,0:68:2444:0:0:0,-20.47,-119.917	0/1:56:45,11:45:1585:11:396:-0.0890651,0,-62.8475	0/1:519:371,148:371:13251:148:5282:-70.1072,0,-457.432	0/0:468:468,0:468:16683:0:0:0,-140.882,-782.728	0/0:280:280,0:280:10020:0:0:0,-84.2884,-464.912	0/1:319:255,64:255:9122:64:2257:-4.24125,0,-345.415	0/0:185:185,0:185:6631:0:0:0,-55.6905,-325.521	0/1:346:255,91:255:9066:91:3248:-36.2015,0,-335.56	0/0:578:578,0:578:20636:0:0:0,-173.995,-960.433	0/1:675:541,134:541:19326:134:4793:-9.43557,0,-721.021	0/1:66:46,20:46:1647:20:720:-9.72698,0,-58.1367	0/1:633:429,204:429:15281:204:7290:-130.905,0,-521.813	0/1:224:170,54:170:6088:54:1925:-15.665,0,-213.891	0/1:209:152,57:152:5444:57:2033:-27.9237,0,-194.159	0/0:17:17,0:17:612:0:0:0,-5.11751,-28.4162	0/0:32:32,0:32:1152:0:0:0,-9.63296,-53.8954	0/0:5:5,0:5:180:0:0:0,-1.50515,-10.2712	0/0:14:14,0:14:500:0:0:0,-4.21442,-26.5719	0/0:38:38,0:38:1360:0:0:0,-11.4391,-64.6791	0/1:464:322,142:322:11498:142:5096:-77.7779,0,-400.974	0/0:329:329,0:329:11704:0:0:0,-99.0389,-559.004	0/1:91:66,25:66:2363:25:900:-13.2698,0,-85.9393	0/1:10:8,2:8:284:2:72:-0.209582,0,-10.0679	0/1:285:202,81:202:7222:81:2899:-42.2623,0,-263.18	0/0:81:81,0:81:2882:0:0:0,-24.3834,-135.58	0/1:466:341,125:341:12115:125:4484:-57.5415,0,-442.186	0/1:113:81,32:81:2895:32:1152:-16.572,0,-100.949	0/0:162:162,0:162:5743:0:0:0,-48.7669,-273.74	0/0:293:292,0:292:10443:0:0:0,-87.9008,-479.619	0/1:301:218,83:218:7804:83:2969:-38.1724,0,-288.016	0/0:408:404,4:404:14417:4:144:0,-116.55,-692.723	0/0:232:232,0:232:8279:0:0:0,-69.839,-398.04	0/1:263:185,78:185:6615:78:2800:-40.4618,0,-240.338	0/0:333:333,0:333:11890:0:0:0,-100.243,-552.733	0/0:20:18,2:18:635:2:72:0,-2.80072,-26.3075	0/0:387:387,0:387:13847:0:0:0,-116.499,-663.011	0/0:136:110,26:110:3915:26:921:0,-1.59782,-149.615	0/0:14:12,2:12:428:2:72:0,-0.994538,-17.3864	0/1:350:260,90:260:9261:90:3228:-34.226,0,-341.472	0/0:140:139,1:139:4949:1:36:0,-40.4495,-241.653	0/1:20:14,6:14:504:6:208:-3.10428,0,-18.2323	0/0:34:34,0:34:1203:0:0:0,-10.235,-56.1199	0/1:192:152,40:152:5421:40:1440:-5.25151,0,-201.723	0/0:164:164,0:164:5884:0:0:0,-49.3689,-274.139	0/1:14:10,4:10:360:4:144:-1.9644,0,-13.5221	0/0:354:354,0:354:12666:0:0:0,-106.565,-608.812	0/0:382:382,0:382:13627:0:0:0,-114.993,-645.718	0/1:148:109,39:109:3876:39:1396:-16.7143,0,-139.655	0/1:244:175,69:175:6237:69:2476:-35.3571,0,-231.317	0/0:370:370,0:370:13187:0:0:0,-111.381,-629.748	0/0:443:437,6:437:15628:6:216:0,-122.564,-712.625	0/0:47:47,0:47:1676:0:0:0,-14.1484,-77.638	0/0:159:159,0:159:5669:0:0:0,-47.8638,-265.207	0/0:89:89,0:89:3171:0:0:0,-26.7917,-146.997	0/1:52:40,12:40:1431:12:421:-1.0628,0,-49.6494	0/0:340:340,0:340:12131:0:0:0,-102.35,-571.965	0/1:225:173,51:173:6187:51:1821:-11.5006,0,-225.305	0/0:297:297,0:297:10593:0:0:0,-89.4059,-500.625	0/0:501:500,1:500:17910:1:36:0,-149.121,-864.537	0/1:238:174,64:174:6150:64:2295:-28.0724,0,-213.921	0/0:261:260,1:260:9268:1:36:0,-76.8742,-431.39	0/0:25:25,0:25:900:0:0:0,-7.52575,-42.4444	0/0:290:290,0:290:10360:0:0:0,-87.2987,-498.875	0/0:316:316,0:316:11292:0:0:0,-95.1255,-541.486	0/0:644:644,0:644:22987:0:0:0,-193.863,-1105.05	0/1:89:65,24:65:2300:24:860:-9.99048,0,-85.2228	0/0:151:151,0:151:5384:0:0:0,-45.4555,-256.614	0/1:117:88,29:88:3159:29:1044:-8.28484,0,-113.215	0/1:329:244,85:244:8709:85:3041:-33.6313,0,-324.664	0/0:62:51,11:51:1819:11:396:0,-1.71711,-69.2766	0/1:159:119,40:119:4259:40:1440:-12.9564,0,-150.099	0/0:159:158,1:158:5634:1:36:0,-46.1691,-271.72	0/1:52:38,14:38:1356:14:496:-5.85442,0,-48.486	0/1:138:106,32:106:3768:32:1137:-9.8371,0,-135.099	0/1:147:91,56:91:3224:56:2007:-40.4094,0,-106.956	0/0:305:305,0:305:10912:0:0:0,-91.8141,-525.494	0/0:233:233,0:233:8321:0:0:0,-70.14,-400.792
chr08	2320115	.	G	A	159851	PASS	AB=0.495224;ABP=3.67406;AC=152;AF=0.808511;AN=188;AO=7363;CIGAR=1X;DP=9083;DPB=9083;DPRA=0;EPP=15991.6;EPPR=3731.43;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.5968;MQMR=59.8957;NS=94;NUMALT=1;ODDS=2.70555;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263786;QR=61330;RO=1717;RPL=7360;RPP=15965.5;RPPR=3696.77;RPR=3;RUN=1;SAF=7360;SAP=15965.5;SAR=3;SRF=1713;SRP=3696.77;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1273:-114.853,-10.8371,0	1/1:205:0,205:0:0:205:7349:-661.403,-61.7112,0	0/1:80:33,47:33:1180:47:1688:-128.125,0,-82.4256	1/1:203:0,203:0:0:203:7292:-656.24,-61.1091,0	0/1:89:51,38:51:1832:38:1364:-96.2619,0,-138.369	0/1:89:45,44:45:1612:44:1584:-116.042,0,-118.578	1/1:119:0,118:0:0:118:4224:-379.938,-35.5215,0	1/1:197:0,197:0:0:197:7028:-632.377,-59.3029,0	1/1:162:0,162:0:0:162:5779:-520.121,-48.7669,0	1/1:77:0,77:0:0:77:2772:-248.147,-23.1793,0	1/1:35:0,35:0:0:35:1256:-113.292,-10.5361,0	1/1:82:0,82:0:0:82:2926:-263.513,-24.6845,0	1/1:74:0,74:0:0:74:2655:-239.16,-22.2762,0	1/1:88:0,88:0:0:88:3155:-284.156,-26.4906,0	1/1:86:0,86:0:0:86:3096:-278.796,-25.8886,0	1/1:63:1,62:1:36:62:2213:-195.813,-15.3666,0	1/1:83:0,83:0:0:83:2980:-268.379,-24.9855,0	1/1:88:0,88:0:0:88:3134:-282.195,-26.4906,0	1/1:40:0,40:0:0:40:1440:-129.628,-12.0412,0	1/1:189:0,189:0:0:189:6769:-609.034,-56.8947,0	1/1:195:0,195:0:0:195:6970:-627.221,-58.7009,0	0/1:34:24,10:24:860:10:356:-22.1285,0,-67.4868	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	0/1:92:39,53:39:1404:53:1908:-144.268,0,-98.9645	1/1:79:0,79:0:0:79:2836:-255.443,-23.7814,0	0/1:384:174,210:174:6214:210:7548:-563.668,0,-443.759	0/1:244:149,95:149:5325:95:3416:-234.082,0,-405.914	1/1:42:0,42:0:0:42:1503:-135.564,-12.6433,0	1/1:250:0,250:0:0:250:8984:-808.147,-75.2575,0	1/1:187:14,173:14:500:173:6204:-513.067,-10.9564,0	0/1:115:62,53:62:2228:53:1903:-136.915,0,-166.165	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:17:0,17:0:0:17:612:-55.3849,-5.11751,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:2:0,2:0:0:2:72:-6.81819,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:237:0,237:0:0:237:8524:-766.976,-71.3441,0	0/1:185:104,81:104:3717:81:2908:-206.251,0,-279.04	0/1:68:37,31:37:1324:31:1112:-79.9198,0,-98.9921	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:123:59,64:59:2101:64:2277:-168.146,0,-152.331	0/1:25:10,15:10:341:15:540:-41.4108,0,-23.492	0/1:123:62,61:62:2216:61:2177:-159.003,0,-162.678	0/1:116:59,57:59:2112:57:2052:-150.014,0,-155.43	1/1:74:0,74:0:0:74:2636:-237.445,-22.2762,0	0/1:47:30,17:30:1068:17:612:-41.2474,0,-79.8999	0/1:132:56,76:56:1999:76:2721:-205.395,0,-140.447	0/1:167:69,98:69:2476:98:3526:-267.212,0,-172.821	1/1:72:0,72:0:0:72:2580:-232.173,-21.6742,0	1/1:101:2,99:2:72:99:3556:-314.776,-25.0034,0	1/1:61:0,61:0:0:61:2177:-196.107,-18.3628,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:109:66,43:66:2353:43:1540:-106.081,0,-179.215	0/1:45:22,23:22:784:23:813:-59.9428,0,-57.3199	0/1:10:3,7:3:93:7:241:-18.8523,0,-5.66643	0/1:101:58,43:58:2054:43:1529:-107.479,0,-154.724	0/1:70:33,37:33:1184:37:1324:-98.39,0,-85.7962	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	1/1:71:0,71:0:0:71:2540:-228.568,-21.3731,0	1/1:109:0,109:0:0:109:3900:-351.141,-32.8123,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:161:69,92:69:2453:92:3300:-248.735,0,-172.556	1/1:209:1,208:1:36:208:7472:-667.296,-59.317,0	1/1:81:0,80:0:0:80:2872:-257.873,-24.0824,0	1/1:67:0,67:0:0:67:2396:-215.859,-20.169,0	1/1:151:2,149:2:72:149:5310:-471.122,-38.6188,0	0/1:85:48,37:48:1724:37:1332:-92.9327,0,-129.858	1/1:21:0,21:0:0:21:756:-68.3496,-6.32163,0	1/1:98:0,98:0:0:98:3519:-316.256,-29.5009,0	1/1:84:0,84:0:0:84:3012:-271.293,-25.2865,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:69:1,68:1:36:68:2439:-216.095,-17.1728,0	0/1:98:43,55:43:1512:55:1968:-147.894,0,-106.869	1/1:235:1,234:1:36:234:8365:-749.164,-67.1438,0	1/1:170:0,169:0:0:169:6067:-545.722,-50.8741,0	1/1:105:0,105:0:0:105:3740:-336.764,-31.6082,0	1/1:126:2,124:2:72:124:4449:-393.717,-31.0931,0	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	1/1:114:0,114:0:0:114:4085:-367.588,-34.3174,0	0/1:92:40,52:40:1436:52:1834:-137.624,0,-101.843	1/1:85:1,84:1:36:84:2981:-266.631,-23.696,0	1/1:97:0,97:0:0:97:3488:-314.053,-29.1999,0	1/1:57:0,57:0:0:57:2035:-183.409,-17.1587,0	0/1:130:68,62:68:2436:62:2206:-159.668,0,-180.361	1/1:180:0,180:0:0:180:6447:-580.102,-54.1854,0	1/1:56:0,56:0:0:56:2012:-181.336,-16.8577,0	0/1:85:37,48:37:1320:48:1728:-130.2,0,-93.5144	1/1:70:0,70:0:0:70:2512:-226.297,-21.0721,0	0/1:27:14,13:14:500:13:464:-33.952,0,-37.2084	0/1:87:46,41:46:1628:41:1469:-106.237,0,-120.617	0/1:90:58,32:58:2088:32:1152:-76.8798,0,-161.097	1/1:108:0,108:0:0:108:3871:-348.555,-32.5112,0	1/1:120:1,119:1:36:119:4259:-379.849,-32.5253,0
chr08	2376030	.	C	T	18007.2	PASS	AB=0.411704;ABP=198.578;AC=35;AF=0.18617;AN=188;AO=1203;CIGAR=1X;DP=8932;DPB=8932;DPRA=0.867114;EPP=2615.29;EPPR=16773.3;GTI=1;LEN=1;MEANALT=1.02381;MQM=59.7132;MQMR=59.9725;NS=94;NUMALT=1;ODDS=1.35634;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42985;QR=276091;RO=7723;RPL=1203;RPP=2615.29;RPPR=16773.3;RPR=0;RUN=1;SAF=0;SAP=2615.29;SAR=1203;SRF=0;SRP=16773.3;SRR=7723;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.645	0/1:97:66,31:66:2341:31:1104:-70.4707,0,-181.745	0/0:366:366,0:366:13105:0:0:0,-110.177,-1179.25	0/1:36:23,13:23:828:13:464:-31.2604,0,-64.007	0/1:27:14,13:14:489:13:464:-33.9615,0,-36.2111	0/0:51:50,1:50:1777:1:36:0,-11.7543,-156.613	0/0:143:143,0:143:5110:0:0:0,-43.0473,-460.04	0/0:121:120,0:120:4270:0:0:0,-36.1236,-384.114	0/0:87:86,0:86:3061:0:0:0,-25.8886,-275.359	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:122:122,0:122:4375:0:0:0,-36.7257,-393.914	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.526	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.422	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5607	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:286:286,0:286:10256:0:0:0,-86.0946,-922.951	0/0:251:250,0:250:8915:0:0:0,-75.2575,-802.011	0/1:109:53,56:53:1893:56:2004:-147.82,0,-137.834	0/0:150:150,0:150:5333:0:0:0,-45.1545,-480.095	0/1:68:46,22:46:1644:22:780:-49.9959,0,-127.772	0/0:158:158,0:158:5638:0:0:0,-47.5627,-507.534	0/1:284:155,129:155:5534:129:4615:-329.995,0,-412.69	0/1:267:173,94:173:6201:94:3358:-222.041,0,-477.809	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:439:439,0:439:15662:0:0:0,-132.152,-1409.27	0/0:118:117,1:117:4189:1:36:0,-31.9233,-373.589	0/1:115:69,46:69:2472:46:1648:-113.988,0,-188.115	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:348:348,0:348:12451:0:0:0,-104.758,-1120.42	0/1:128:79,49:79:2840:49:1764:-120.507,0,-217.306	0/1:40:23,17:23:828:17:604:-42.6035,0,-62.8029	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:83:50,33:50:1796:33:1184:-81.8828,0,-136.937	0/1:23:12,11:12:432:11:396:-29.0498,0,-32.2975	0/1:116:62,54:62:2216:54:1913:-137.508,0,-164.785	0/1:41:19,22:19:684:22:788:-58.9026,0,-49.5481	0/0:49:48,1:48:1720:1:36:0,-11.1522,-151.487	0/1:109:84,25:84:2997:25:888:-47.4268,0,-237.147	0/1:52:30,22:30:1080:22:780:-54.8695,0,-81.8597	0/1:56:31,25:31:1116:25:869:-61.6637,0,-83.894	0/0:100:100,0:100:3577:0:0:0,-30.103,-322.136	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.17	0/0:162:161,1:161:5741:1:36:0,-45.1686,-513.204	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:90:51,39:51:1832:39:1389:-98.1981,0,-138.068	0/1:56:30,26:30:1076:26:924:-66.6184,0,-80.2943	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:135:74,61:74:2652:61:2173:-155.191,0,-198.287	0/1:61:42,19:42:1504:19:680:-43.1663,0,-117.292	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:68:68,0:68:2433:0:0:0,-20.47,-219.224	0/0:92:92,0:92:3293:0:0:0,-27.6948,-296.587	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:139:93,46:93:3320:46:1648:-106.765,0,-257.175	0/0:155:154,0:154:5483:0:0:0,-46.3586,-493.235	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:213:211,2:211:7470:2:72:0,-57.2827,-665.504	0/1:197:96,100:96:3440:100:3572:-262.326,0,-250.451	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.827	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:154:154,0:154:5524:0:0:0,-46.3586,-497.282	0/1:85:60,25:60:2156:25:896:-55.3728,0,-168.719	0/0:224:224,0:224:7998:0:0:0,-67.4307,-718.643	0/0:218:218,0:218:7828:0:0:0,-65.6245,-704.541	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.203	0/0:103:98,5:98:3520:5:180:0,-14.454,-300.457	0/1:15:7,8:7:252:8:288:-21.7354,0,-18.5135	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.337	0/1:138:89,49:89:3139:49:1760:-117.134,0,-241.183	0/0:205:204,0:204:7286:0:0:0,-61.4101,-655.43	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	0/0:95:92,3:92:3304:3:108:0,-18.5227,-287.491	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:104:73,31:73:2620:31:1112:-68.6155,0,-204.74	0/0:63:63,0:63:2253:0:0:0,-18.9649,-203.031	0/1:29:14,15:14:504:15:540:-40.1781,0,-36.9682	0/1:61:29,32:29:1029:32:1144:-84.7746,0,-74.5583	0/1:66:21,45:21:737:45:1616:-125.831,0,-46.7826	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/0:96:96,0:96:3441:0:0:0,-28.8989,-309.901
chr08	2421748	.	G	A	14335.3	PASS	AB=0.461988;ABP=30.9093;AC=37;AF=0.196809;AN=188;AO=1041;CIGAR=1X;DP=6212;DPB=6212;DPRA=1.01206;EPP=2263.51;EPPR=11218.7;GTI=1;LEN=1;MEANALT=1;MQM=59.9904;MQMR=59.9965;NS=94;NUMALT=1;ODDS=4.10134;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34628;QR=183539;RO=5165;RPL=1041;RPP=2263.51;RPPR=11218.7;RPR=0;RUN=1;SAF=1041;SAP=2263.51;SAR=0;SRF=5165;SRP=11218.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/1:47:20,27:20:691:27:952:-71.8468,0,-48.3619	0/0:162:162,0:162:5750:0:0:0,-48.7669,-517.618	0/1:25:15,10:15:540:10:326:-22.1285,0,-41.4108	0/1:35:16,19:16:576:19:630:-46.4745,0,-41.6389	0/0:93:93,0:93:3319:0:0:0,-27.9958,-298.928	0/0:77:77,0:77:2741:0:0:0,-23.1793,-246.931	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/0:68:68,0:68:2393:0:0:0,-20.47,-215.626	0/0:67:67,0:67:2367:0:0:0,-20.169,-213.289	0/0:60:59,0:59:2094:0:0:0,-17.7608,-188.369	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/0:66:65,0:65:2304:0:0:0,-19.5669,-207.348	0/0:33:33,0:33:1161:0:0:0,-9.93399,-104.795	0/0:75:75,0:75:2641:0:0:0,-22.5772,-237.937	0/0:61:61,0:61:2174:0:0:0,-18.3628,-195.925	0/0:41:41,0:41:1445:0:0:0,-12.3422,-130.344	0/0:175:172,0:172:6124:0:0:0,-51.7772,-550.902	0/0:89:89,0:89:3166:0:0:0,-26.7917,-285.165	0/1:47:16,31:16:576:31:998:-75.9608,0,-38.0266	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:57:40,17:40:1432:17:561:-33.6419,0,-112.019	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:190:106,84:106:3770:84:2772:-192.516,0,-282.304	0/1:92:58,34:58:2076:34:1140:-75.1992,0,-159.416	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:109:108,1:108:3820:1:36:0,-29.214,-340.398	0/0:72:70,2:70:2495:2:72:0,-14.8374,-217.966	0/1:87:51,36:51:1824:36:1121:-74.9759,0,-138.251	1/1:5:0,5:0:0:5:161:-14.8066,-1.50515,0	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/1:6:2,4:2:72:4:125:-9.75244,0,-5.03054	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6062	0/0:180:180,0:180:6386:0:0:0,-54.1854,-574.833	0/1:124:76,48:76:2693:48:1606:-107.484,0,-205.286	0/1:68:39,29:39:1383:29:971:-67.2207,0,-104.298	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:106:52,54:52:1827:54:1739:-124.865,0,-132.798	0/1:45:25,20:25:896:20:676:-47.608,0,-67.414	0/1:55:26,29:26:913:29:1009:-74.5623,0,-65.9274	0/1:51:36,15:36:1256:15:471:-27.3382,0,-97.9867	0/0:53:53,0:53:1875:0:0:0,-15.9546,-169.028	0/1:69:31,38:31:1112:38:1283:-94.9913,0,-79.6203	0/1:87:46,41:46:1652:41:1410:-101.002,0,-122.779	0/1:102:64,38:64:2281:38:1260:-82.9787,0,-174.845	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/0:68:66,2:66:2347:2:72:0,-13.6333,-204.652	0/0:98:98,0:98:3494:0:0:0,-29.5009,-314.671	0/1:8:5,3:5:176:3:104:-7.29457,0,-13.7768	0/1:122:72,50:72:2559:50:1662:-113.127,0,-193.835	0/1:30:14,16:14:496:16:564:-42.0594,0,-35.9434	0/1:13:6,7:6:216:7:244:-18.386,0,-15.8771	0/1:88:51,37:51:1816:37:1258:-87.0223,0,-137.231	0/1:12:2,10:2:72:10:337:-27.0424,0,-3.22436	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/0:36:36,0:36:1274:0:0:0,-10.8371,-114.961	0/0:116:116,0:116:4113:0:0:0,-34.9195,-370.357	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/1:138:69,69:69:2442:69:2264:-162.466,0,-178.493	0/0:115:114,1:114:4070:1:36:0,-31.0202,-362.888	0/0:116:116,0:116:4140:0:0:0,-34.9195,-372.785	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.78	0/1:78:35,43:35:1222:43:1403:-103.068,0,-86.8017	0/0:30:30,0:30:1059:0:0:0,-9.0309,-95.6204	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/0:86:86,0:86:3036:0:0:0,-25.8886,-273.47	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:72:72,0:72:2542:0:0:0,-21.6742,-229.029	0/1:35:18,17:18:635:17:551:-39.3598,0,-46.9409	0/0:94:94,0:94:3322:0:0:0,-28.2968,-299.198	0/0:105:105,0:105:3679:0:0:0,-31.6081,-331.312	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.133	0/0:67:66,0:66:2343:0:0:0,-19.868,-210.77	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/0:87:85,2:85:3016:2:57:0,-20.7763,-266.257	0/1:52:18,34:18:635:34:1155:-88.5933,0,-41.8234	0/0:153:153,0:153:5439:0:0:0,-46.0576,-489.639	0/0:76:76,0:76:2688:0:0:0,-22.8783,-242.164	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:63:41,22:41:1464:22:712:-45.4152,0,-113.091	0/0:115:114,1:114:4060:1:36:0,-31.0202,-361.988	0/0:40:40,0:40:1408:0:0:0,-12.0412,-127.017	0/1:63:35,28:35:1247:28:957:-67.4732,0,-93.5692	0/0:65:65,0:65:2303:0:0:0,-19.5669,-207.531	0/1:72:40,32:40:1428:32:1113:-78.8009,0,-107.143	0/1:101:43,58:43:1548:58:1911:-141.855,0,-109.209	0/1:38:17,21:17:604:21:661:-48.3451,0,-43.2515	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.949
chr08	2435271	.	T	C	423422	PASS	AB=0.480532;ABP=26.2607;AC=152;AF=0.808511;AN=188;AO=14862;CIGAR=1X;DP=18563;DPB=18563;DPRA=0;EPP=25000.3;EPPR=4918.61;GTI=0;LEN=1;MEANALT=1.10638;MQM=59.9916;MQMR=60;NS=94;NUMALT=1;ODDS=12.0783;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=529539;QR=132087;RO=3687;RPL=6414;RPP=607.486;RPPR=8.10416;RPR=8448;RUN=1;SAF=7305;SAP=12.2888;SAR=7557;SRF=2196;SRP=295.735;SRR=1491;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:104:0,104:0:0:104:3684:-331.764,-31.3071,0	1/1:238:0,238:0:0:238:8517:-766.528,-71.6451,0	0/1:423:206,217:206:7377:217:7760:-571.097,0,-536.639	1/1:256:1,254:1:36:254:9060:-811.853,-73.4493,0	0/1:126:54,72:54:1936:72:2576:-194.16,0,-136.587	0/1:149:67,82:67:2412:82:2918:-218,0,-172.482	1/1:225:0,225:0:0:225:8004:-720.386,-67.7318,0	1/1:364:0,364:0:0:364:12957:-1165.95,-109.575,0	1/1:313:0,313:0:0:313:11184:-1006.45,-94.2224,0	1/1:138:0,138:0:0:138:4955:-446.097,-41.5421,0	1/1:158:0,158:0:0:158:5664:-509.879,-47.5627,0	1/1:193:0,193:0:0:193:6870:-618.359,-58.0988,0	1/1:190:0,189:0:0:189:6748:-607.035,-56.8947,0	1/1:213:0,213:0:0:213:7577:-681.972,-64.1194,0	1/1:167:0,167:0:0:167:5980:-538.306,-50.272,0	1/1:129:0,129:0:0:129:4591:-413.355,-38.8329,0	1/1:138:0,138:0:0:138:4937:-444.48,-41.5421,0	1/1:138:0,138:0:0:138:4921:-443.041,-41.5421,0	1/1:79:0,79:0:0:79:2822:-254.218,-23.7814,0	1/1:281:1,280:1:36:280:9991:-895.531,-80.9912,0	1/1:283:0,283:0:0:283:10061:-905.431,-85.1915,0	0/1:175:94,81:94:3368:81:2908:-209.275,0,-250.656	1/1:117:0,117:0:0:117:4156:-374.225,-35.2205,0	0/1:150:45,105:45:1616:105:3763:-293.714,0,-100.576	1/1:166:0,166:0:0:166:5924:-533.269,-49.971,0	0/1:390:230,160:230:8235:160:5662:-392.301,0,-623.759	0/1:544:297,247:297:10648:247:8836:-631.467,0,-794.467	1/1:76:0,76:0:0:76:2711:-244.234,-22.8783,0	1/1:435:0,435:0:0:435:15484:-1393.28,-130.948,0	1/1:232:7,225:7:252:225:7986:-695.736,-46.81,0	0/1:218:95,123:95:3381:123:4387:-329.38,0,-238.881	0/1:26:11,15:11:396:15:532:-40.3863,0,-28.156	1/1:34:0,34:0:0:34:1207:-108.935,-10.235,0	0/1:27:18,9:18:644:9:315:-20.5594,0,-50.1628	1/1:26:0,26:0:0:26:926:-83.6577,-7.82678,0	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	1/1:455:0,455:0:0:455:16233:-1460.65,-136.969,0	0/1:160:74,86:74:2637:86:3057:-227.194,0,-189.411	0/1:140:62,78:62:2216:78:2783:-208.566,0,-157.561	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:280:132,148:132:4733:148:5295:-392.397,0,-341.837	0/1:80:42,38:42:1508:38:1368:-99.3384,0,-111.932	0/1:350:175,175:175:6288:175:6233:-455.707,0,-460.65	0/1:162:80,82:80:2876:82:2944:-216.427,0,-210.309	1/1:122:0,121:0:0:121:4304:-387.286,-36.4246,0	0/1:166:75,91:75:2696:91:3249:-242.66,0,-192.913	0/1:277:160,117:160:5706:117:4145:-289.848,0,-430.271	0/1:373:194,179:194:6935:179:6353:-459.576,0,-511.933	1/1:168:0,168:0:0:168:5962:-536.69,-50.573,0	1/1:302:0,302:0:0:302:10799:-971.812,-90.9111,0	1/1:169:0,169:0:0:169:5996:-539.748,-50.8741,0	0/1:49:20,29:20:705:29:1040:-79.1639,0,-49.0223	0/1:314:160,154:160:5731:154:5489:-399.615,0,-421.382	0/1:148:85,63:85:3048:63:2244:-157.671,0,-229.997	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:305:154,150:154:5515:150:5360:-390.738,0,-404.701	0/1:123:77,46:77:2768:46:1633:-110.23,0,-212.334	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	1/1:220:1,218:1:36:218:7754:-694.297,-62.6871,0	1/1:205:1,203:1:36:203:7229:-647.066,-58.1717,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:238:138,100:138:4941:100:3564:-249.324,0,-373.193	1/1:377:0,377:0:0:377:13392:-1205.08,-113.488,0	1/1:143:0,143:0:0:143:5082:-457.524,-43.0473,0	1/1:136:0,136:0:0:136:4846:-436.295,-40.9401,0	1/1:340:1,339:1:36:339:12045:-1080.31,-98.7519,0	0/1:280:203,77:203:7246:77:2727:-161.384,0,-567.904	1/1:97:0,97:0:0:97:3448:-310.534,-29.1999,0	1/1:114:0,114:0:0:114:4050:-364.686,-34.3174,0	1/1:160:0,160:0:0:160:5698:-512.941,-48.1648,0	1/1:45:1,44:1:36:44:1584:-139.253,-9.94808,0	1/1:229:0,229:0:0:229:8149:-733.429,-68.9359,0	0/1:158:68,89:68:2440:89:3169:-237.812,0,-172.233	1/1:403:0,402:0:0:402:14296:-1286.08,-121.014,0	1/1:359:2,357:2:72:357:12732:-1138.87,-101.233,0	1/1:344:0,344:0:0:344:12256:-1102.57,-103.554,0	1/1:268:4,259:4:144:259:9245:-818.707,-66.2171,0	0/1:35:22,13:22:792:13:458:-31.018,0,-61.0696	1/1:290:0,290:0:0:290:10319:-928.639,-87.2987,0	0/1:316:171,145:171:6135:145:5172:-370.496,0,-457.122	1/1:381:0,381:0:0:381:13582:-1222.17,-114.692,0	1/1:184:0,183:0:0:183:6476:-582.57,-55.0885,0	1/1:167:0,167:0:0:167:5980:-538.303,-50.272,0	0/1:187:88,99:88:3164:99:3520:-260.717,0,-228.691	1/1:285:0,285:0:0:285:10153:-913.704,-85.7936,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:162:78,84:78:2808:84:2969:-218.675,0,-204.192	1/1:168:1,167:1:36:167:5935:-530.661,-46.9748,0	0/1:139:74,65:74:2660:65:2315:-166.767,0,-197.802	0/1:211:103,108:103:3689:108:3832:-281.56,0,-268.693	0/1:137:96,41:96:3433:41:1464:-90.8149,0,-267.941	1/1:248:0,248:0:0:248:8807:-792.622,-74.6554,0	1/1:264:0,264:0:0:264:9422:-847.938,-79.4719,0
chr08	2435323	.	A	T	24668.1	PASS	AB=0.474286;ABP=21.1018;AC=36;AF=0.191489;AN=188;AO=1501;CIGAR=1X;DP=9147;DPB=9147;DPRA=0.842941;EPP=3262.39;EPPR=16582.2;GTI=2;LEN=1;MEANALT=1.075;MQM=59.996;MQMR=59.998;NS=94;NUMALT=1;ODDS=0.838312;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53784;QR=273612;RO=7635;RPL=1501;RPP=3262.39;RPPR=16582.2;RPR=0;RUN=1;SAF=0;SAP=3262.39;SAR=1501;SRF=0;SRP=16582.2;SRR=7635;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:168:168,0:168:6017:0:0:0,-50.573,-541.632	0/1:139:83,56:83:2972:56:2012:-139.51,0,-225.87	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:65:39,26:39:1404:26:936:-64.9925,0,-107.092	0/1:93:54,39:54:1940:39:1377:-96.2309,0,-146.88	0/0:127:127,0:127:4544:0:0:0,-38.2308,-409.127	0/0:193:193,0:193:6928:0:0:0,-58.0988,-623.584	0/0:195:194,0:194:6933:0:0:0,-58.3998,-623.676	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:93:93,0:93:3330:0:0:0,-27.9958,-299.916	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.657	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.582	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:92:92,0:92:3312:0:0:0,-27.6948,-298.297	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:162:162,0:162:5808:0:0:0,-48.7669,-522.832	0/0:149:149,0:149:5293:0:0:0,-44.8535,-476.508	0/1:122:65,57:65:2336:57:2029:-146.155,0,-173.774	0/0:51:51,0:51:1812:0:0:0,-15.3525,-163.362	0/1:108:71,35:71:2544:35:1252:-80.7162,0,-196.942	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.324	0/1:157:73,84:73:2620:84:3016:-224.409,0,-188.786	0/1:196:92,104:92:3296:104:3740:-277.797,0,-237.857	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/0:201:201,0:201:7208:0:0:0,-60.507,-648.773	0/0:148:144,4:144:5135:4:144:0,-31.2388,-448.98	0/1:135:77,58:77:2764:58:2073:-146.2,0,-208.362	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:278:278,0:278:9988:0:0:0,-83.6863,-898.852	0/1:80:44,36:44:1568:36:1296:-92.8615,0,-117.329	0/1:70:41,29:41:1472:29:1036:-72.4818,0,-111.704	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:139:77,62:77:2760:62:2228:-158.941,0,-206.798	0/1:31:12,19:12:432:19:684:-52.5584,0,-29.8893	0/1:132:79,53:79:2836:53:1892:-130.822,0,-215.742	0/1:107:52,55:52:1872:55:1972:-145.545,0,-136.549	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:61:36,25:36:1284:25:896:-62.5975,0,-97.5006	0/1:137:72,65:72:2588:65:2310:-166.916,0,-191.927	0/1:152:95,57:95:3396:57:2042:-138.295,0,-260.099	0/0:96:96,0:96:3429:0:0:0,-28.8989,-308.822	0/0:104:104,0:104:3744:0:0:0,-31.3071,-337.158	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:146:83,63:83:2967:63:2268:-160.432,0,-223.312	0/1:49:28,21:28:1004:21:752:-53.2558,0,-75.9254	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:110:57,53:57:2032:53:1904:-138.524,0,-150.039	0/1:88:24,64:24:860:64:2269:-177.981,0,-51.2312	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:118:116,0:116:4160:0:0:0,-34.9195,-374.222	0/0:120:117,0:117:4196:0:0:0,-35.2205,-377.461	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/1:107:51,56:51:1832:56:2008:-148.783,0,-132.951	0/0:210:210,0:210:7528:0:0:0,-63.2163,-677.558	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:208:208,0:208:7476:0:0:0,-62.6142,-672.879	0/1:40:16,24:16:568:24:856:-65.3181,0,-39.4107	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:15:14,1:14:496:1:36:0,-0.917175,-41.376	0/0:88:88,0:88:3139:0:0:0,-26.4906,-282.736	0/1:89:47,42:47:1684:42:1508:-109.223,0,-125.055	0/0:250:250,0:250:8952:0:0:0,-75.2575,-805.661	0/0:176:176,0:176:6312:0:0:0,-52.9813,-568.171	0/0:177:177,0:177:6341:0:0:0,-53.2823,-570.779	0/0:118:117,1:117:4177:1:36:0,-31.9233,-372.513	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/0:136:136,0:136:4884:0:0:0,-40.9401,-439.711	0/1:130:65,65:65:2336:65:2332:-171.006,0,-171.355	0/0:237:237,0:237:8472:0:0:0,-71.3441,-762.483	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:134:68,65:68:2440:65:2340:-170.462,0,-179.458	0/0:168:168,0:168:6044:0:0:0,-50.573,-544.06	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:101:52,49:52:1859:49:1760:-128.28,0,-137.185	0/0:85:82,1:82:2940:1:36:0,-21.747,-261.236	0/1:36:14,22:14:504:22:792:-60.7686,0,-34.861	0/1:72:32,40:32:1140:40:1432:-107.503,0,-81.235	0/1:74:25,49:25:896:49:1764:-136.768,0,-58.6841	0/0:96:96,0:96:3424:0:0:0,-28.8989,-308.375	0/0:157:157,0:157:5640:0:0:0,-47.2617,-507.718
chr08	2499514	.	C	T	405406	PASS	AB=0.497817;ABP=3.28521;AC=153;AF=0.81383;AN=188;AO=14835;CIGAR=1X;DP=18200;DPB=18200;DPRA=0;EPP=32147.4;EPPR=7281.79;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9892;MQMR=60;NS=94;NUMALT=1;ODDS=8.18335;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=523500;QR=118427;RO=3356;RPL=7112;RPP=57.6551;RPPR=40.2799;RPR=7723;RUN=1;SAF=7104;SAP=60.5545;SAR=7731;SRF=1557;SRP=40.9037;SRR=1799;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:105:1,104:1:36:104:3606:-321.151,-28.0099,0	1/1:300:1,299:1:36:299:10570:-947.626,-86.7107,0	0/1:282:159,123:159:5592:123:4376:-309.124,0,-418.514	1/1:381:1,380:1:36:380:13459:-1207.52,-111.094,0	0/1:171:81,90:81:2863:90:3190:-235.849,0,-206.43	0/1:153:70,83:70:2508:83:2911:-216.168,0,-179.915	1/1:245:0,245:0:0:245:8628:-776.525,-73.7524,0	1/1:379:0,379:0:0:379:13268:-1193.92,-114.09,0	1/1:200:0,200:0:0:200:7072:-636.546,-60.206,0	1/1:241:0,241:0:0:241:8542:-768.786,-72.5482,0	1/1:184:0,184:0:0:184:6452:-580.774,-55.3895,0	1/1:164:0,164:0:0:164:5789:-521.13,-49.3689,0	1/1:188:0,188:0:0:188:6596:-593.73,-56.5936,0	1/1:157:1,156:1:36:156:5420:-484.284,-43.6634,0	1/1:139:0,139:0:0:139:4921:-443.045,-41.8432,0	1/1:140:0,140:0:0:140:4902:-441.339,-42.1442,0	1/1:187:4,183:4:144:183:6434:-565.842,-42.979,0	1/1:127:0,127:0:0:127:4494:-404.631,-38.2308,0	1/1:162:0,162:0:0:162:5697:-512.851,-48.7669,0	1/1:318:0,318:0:0:318:11315:-1018.24,-95.7275,0	1/1:285:0,285:0:0:285:10043:-903.819,-85.7936,0	0/1:107:72,35:72:2525:35:1236:-79.334,0,-195.289	1/1:156:0,156:0:0:156:5537:-498.459,-46.9607,0	0/1:185:102,83:102:3617:83:2956:-210.584,0,-270.046	1/1:143:0,143:0:0:143:5071:-456.539,-43.0473,0	0/1:537:229,308:229:8068:308:10852:-814.94,0,-564.493	0/1:421:206,215:206:7295:215:7654:-562.167,0,-529.872	1/1:89:0,89:0:0:89:3087:-278.059,-26.7917,0	1/1:428:0,428:0:0:428:15232:-1370.6,-128.841,0	1/1:179:1,177:1:36:177:6235:-557.656,-50.3449,0	0/1:316:157,157:157:5526:157:5542:-404.027,0,-402.587	0/1:15:7,8:7:239:8:288:-21.752,0,-17.3273	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:410:0,410:0:0:410:14449:-1300.18,-123.422,0	0/1:228:80,148:80:2851:148:5244:-403.466,0,-188.193	0/1:168:75,93:75:2658:93:3307:-247.276,0,-188.893	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	0/1:285:166,119:166:5927:119:4219:-294.101,0,-447.746	0/1:107:52,55:52:1830:55:1963:-144.734,0,-132.769	0/1:250:137,113:137:4811:113:4044:-288.89,0,-357.89	0/1:178:83,95:83:2909:95:3306:-244.177,0,-208.462	1/1:161:0,161:0:0:161:5669:-510.338,-48.4658,0	0/1:192:104,88:104:3699:88:3143:-225.298,0,-275.313	0/1:201:96,105:96:3384:105:3701:-272.785,0,-244.27	0/1:366:133,233:133:4665:233:8159:-624.155,0,-309.838	1/1:181:2,179:2:72:179:6324:-562.42,-47.6497,0	1/1:318:0,316:0:0:316:11198:-1007.36,-95.1255,0	1/1:198:1,197:1:36:197:6908:-618.197,-56.0057,0	0/1:11:9,2:9:316:2:72:-3.52539,0,-25.4675	0/1:256:111,144:111:3942:144:5081:-380.314,0,-277.849	0/1:97:58,39:58:2063:39:1388:-96.019,0,-156.741	0/1:37:24,13:24:847:13:460:-30.5973,0,-65.4106	0/1:263:141,122:141:5029:122:4286:-306.75,0,-373.585	0/1:94:55,39:55:1906:39:1368:-95.1198,0,-143.517	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:26:10,16:10:341:16:568:-43.6251,0,-23.191	1/1:122:0,122:0:0:122:4317:-388.709,-36.7257,0	1/1:212:1,211:1:36:211:7469:-668.662,-60.2201,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:289:131,158:131:4613:158:5531:-410.925,0,-328.34	1/1:351:2,349:2:64:349:12289:-1099.79,-99.5828,0	1/1:120:0,120:0:0:120:4257:-383.311,-36.1236,0	1/1:218:1,217:1:36:217:7664:-686.204,-62.0263,0	1/1:322:2,320:2:72:320:11286:-1008.81,-90.0949,0	0/1:240:156,84:156:5533:84:2948:-193.307,0,-425.852	1/1:88:1,87:1:36:87:3058:-271.852,-22.8924,0	1/1:171:0,171:0:0:171:6064:-545.869,-51.4761,0	1/1:158:0,158:0:0:158:5500:-495.135,-47.5627,0	1/1:45:0,45:0:0:45:1581:-142.579,-13.5464,0	1/1:164:0,164:0:0:164:5791:-521.31,-49.3689,0	0/1:165:75,90:75:2650:90:3151:-234.146,0,-189.077	1/1:414:2,411:2:72:411:14536:-1301.21,-117.769,0	1/1:360:0,360:0:0:360:12740:-1146.43,-108.371,0	1/1:272:1,270:1:36:270:9529:-853.98,-78.3407,0	1/1:243:0,243:0:0:243:8593:-773.375,-73.1503,0	0/1:44:28,15:28:989:15:536:-35.4113,0,-76.1628	1/1:244:1,243:1:36:243:8666:-776.337,-69.853,0	0/1:213:126,87:126:4466:87:3060:-211.511,0,-337.991	1/1:520:0,520:0:0:520:18383:-1653.85,-156.536,0	1/1:195:0,195:0:0:195:6850:-616.579,-58.7009,0	1/1:112:0,112:0:0:112:3930:-353.894,-33.7154,0	0/1:176:89,87:89:3086:87:3046:-221.388,0,-224.985	1/1:298:0,298:0:0:298:10510:-945.828,-89.7069,0	1/1:103:0,103:0:0:103:3602:-324.388,-31.0061,0	0/1:132:70,62:70:2393:62:2189:-157.538,0,-175.884	1/1:168:0,168:0:0:168:5910:-532.016,-50.573,0	0/1:110:50,60:50:1745:60:2118:-157.775,0,-124.219	0/1:160:80,80:80:2831:80:2838:-207.494,0,-206.863	0/1:168:110,58:110:3854:58:2029:-132.309,0,-296.484	1/1:142:0,142:0:0:142:4990:-449.243,-42.7463,0	1/1:217:0,217:0:0:217:7604:-684.41,-65.3235,0
chr08	2516375	.	GATGCTCTATA	GATGTTCTGTG,GATGCTCTGTA	128929	PASS	AB=0.452372,0.528577;ABP=55.7559,21.9987;AC=151,37;AF=0.803191,0.196809;AN=188;AO=4851,1547;CIGAR=4M1X3M1X1M1X,8M1X2M;DP=6550;DPB=6550.18;DPRA=0,1.56293;EPP=9694.47,3140.24;EPPR=9.52472;GTI=2;LEN=11,1;MEANALT=2.79787,3.46512;MQM=59.5119,59.9476;MQMR=60;NS=94;NUMALT=2;ODDS=0.10722;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=120,0;PQR=0;PRO=0;QA=158366,53588;QR=97;RO=3;RPL=99,28;RPP=9694.47,3123.48;RPPR=9.52472;RPR=4752,1519;RUN=1,1;SAF=0,2;SAP=10536.8,3344.93;SAR=4851,1545;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:426,0:-38.6543,-3.91339,0,-38.6543,-3.91339,-38.6543	1/1:80:0,80,0:0:0:80,0:2607,0:-234.753,-24.0824,0,-234.753,-24.0824,-234.753	1/2:107:0,52,54:0:0:52,54:1737,1878:-293.28,-152.677,-137.024,-140.584,0,-124.328	1/1:109:0,105,0:0:0:105,0:3477,0:-312.749,-31.6082,0,-312.749,-31.6082,-312.749	1/2:80:0,33,46:0:0:33,46:1121,1616:-222.474,-131.558,-121.624,-90.9388,0,-77.0914	1/2:44:0,25,18:0:0:25,18:847,632:-120.193,-51.5329,-44.0072,-68.7497,0,-63.3311	1/1:58:0,58,0:0:0:58,0:1939,0:-174.786,-17.4597,0,-174.786,-17.4597,-174.786	1/1:163:0,163,0:0:0:163,0:5416,0:-487.551,-49.0679,0,-487.551,-49.0679,-487.551	1/1:48:0,46,1:0:0:46,1:1545,36:-138.981,-13.8474,0,-136.043,-10.895,-135.742	1/1:73:0,73,0:0:0:73,0:2431,0:-219.031,-21.9752,0,-219.031,-21.9752,-219.031	1/1:35:1,32,0:1:36:32,0:969,0:-83.923,-6.68057,0,-84.224,-9.63296,-87.1631	1/1:32:0,32,0:0:0:32,0:985,0:-88.9355,-9.63296,0,-88.9355,-9.63296,-88.9355	1/1:52:0,51,0:0:0:51,0:1574,0:-141.666,-15.3525,0,-141.666,-15.3525,-141.666	1/1:86:0,78,0:0:0:78,0:2491,0:-224.156,-23.4803,0,-224.156,-23.4803,-224.156	1/1:33:0,30,0:0:0:30,0:950,0:-85.5427,-9.0309,0,-85.5427,-9.0309,-85.5427	1/1:28:0,26,0:0:0:26,0:851,0:-76.6571,-7.82678,0,-76.6571,-7.82678,-76.6571	1/1:89:0,89,0:0:0:89,0:2747,0:-247.463,-26.7917,0,-247.463,-26.7917,-247.463	1/1:53:0,52,0:0:0:52,0:1654,0:-148.906,-15.6536,0,-148.906,-15.6536,-148.906	1/1:32:0,32,0:0:0:32,0:984,0:-88.8229,-9.63296,0,-88.8229,-9.63296,-88.8229	1/1:227:0,220,2:0:0:220,2:7187,72:-646.644,-66.2266,0,-640.769,-60.3289,-640.167	1/1:83:0,82,0:0:0:82,0:2710,0:-243.889,-24.6845,0,-243.889,-24.6845,-243.889	1/2:123:0,79,41:0:0:79,41:2523,1408:-317.502,-114.338,-90.5562,-203.173,0,-190.83	1/1:16:0,16,0:0:0:16,0:529,0:-47.9229,-4.81648,0,-47.9229,-4.81648,-47.9229	1/2:95:0,53,39:0:0:53,39:1798,1351:-255.614,-109.832,-93.8773,-145.812,0,-134.072	1/1:39:0,37,0:0:0:37,0:1205,0:-108.467,-11.1381,0,-108.467,-11.1381,-108.467	1/2:294:0,125,163:0:0:125,163:4105,5615:-787.638,-456.106,-418.477,-331.575,0,-282.507	1/2:138:0,56,81:0:0:56,81:1883,2804:-380.381,-227.856,-210.999,-152.507,0,-128.124	1/1:18:0,17,0:0:0:17,0:545,0:-49.0744,-5.11751,0,-49.0744,-5.11751,-49.0744	1/1:154:0,149,0:0:0:149,0:4951,0:-445.407,-44.8535,0,-445.407,-44.8535,-445.407	1/1:132:0,123,6:0:0:123,6:4064,216:-365.606,-37.0267,0,-347.98,-19.3778,-346.174	1/2:61:0,28,32:0:0:28,32:950,1123:-168.453,-91.4233,-82.9945,-77.0531,0,-67.4201	1/2:4:0,3,1:0:0:3,1:102,36:-11.556,-3.29724,-2.39415,-8.61364,0,-8.31261	1/1:4:0,4,0:0:0:4,0:130,0:-12.0196,-1.20412,0,-12.0196,-1.20412,-12.0196	1/2:13:0,5,7:0:0:5,7:164,244:-33.222,-19.9739,-18.4687,-13.3556,0,-11.2484	1/1:3:0,3,0:0:0:3,0:102,0:-9.5168,-0.90309,0,-9.5168,-0.90309,-9.5168	1/1:9:0,9,0:0:0:9,0:279,0:-25.4139,-2.70927,0,-25.4139,-2.70927,-25.4139	1/1:155:0,145,0:0:0:145,0:4359,0:-392.246,-43.6494,0,-392.246,-43.6494,-392.246	1/2:207:0,95,106:0:0:95,106:3113,3663:-549.13,-297.696,-269.098,-251.497,0,-219.587	1/2:70:1,25,44:1:31:25,44:741,1478:-176.1,-117.264,-112.226,-56.6494,0,-45.8931	1/1:1:0,1,0:0:0:1,0:33,0:-3.29913,-0.30103,0,-3.29913,-0.30103,-3.29913	1/2:96:0,42,54:0:0:42,54:1389,1896:-266.968,-154.656,-142.012,-112.652,0,-96.396	1/2:24:0,15,8:0:0:15,8:459,271:-58.7157,-21.9537,-17.4383,-36.7334,0,-34.3252	1/2:98:0,29,69:0:0:29,69:968,2414:-275.094,-196.744,-188.014,-78.6884,0,-57.9174	1/2:43:0,19,23:0:0:19,23:618,800:-115.017,-65.1417,-59.4222,-49.9539,0,-43.0302	1/1:37:0,36,0:0:0:36,0:1096,0:-98.6595,-10.8371,0,-98.6595,-10.8371,-98.6595	1/2:67:0,27,38:0:0:27,38:909,1333:-182.189,-108.541,-100.413,-73.7007,0,-62.2615	1/2:111:0,50,60:0:0:50,60:1638,2108:-303.936,-171.644,-156.592,-132.359,0,-114.297	1/2:126:0,70,55:0:0:70,55:2336,1935:-345.887,-156.809,-135.737,-189.139,0,-172.583	1/1:60:0,58,0:0:0:58,0:1942,0:-174.766,-17.4597,0,-174.766,-17.4597,-174.766	1/1:105:0,102,0:0:0:102,0:3429,0:-308.238,-30.7051,0,-308.238,-30.7051,-308.238	1/1:72:0,66,0:0:0:66,0:2241,0:-201.692,-19.868,0,-201.692,-19.868,-201.692	1/2:7:0,3,4:0:0:3,4:90,129:-17.9095,-10.7235,-9.82045,-7.49556,0,-6.29144	1/2:115:0,58,55:0:0:58,55:1966,1909:-314.613,-155.206,-137.746,-159.429,0,-142.873	1/2:31:0,9,22:0:0:9,22:304,760:-86.731,-62.0932,-59.3839,-24.9777,0,-18.355	1/2:8:0,2,6:0:0:2,6:71,212:-23.4042,-17.6186,-17.0166,-6.14,0,-4.33382	1/2:79:0,25,51:0:0:25,51:821,1777:-210.835,-144.503,-136.977,-66.3166,0,-50.9641	1/2:25:0,10,15:0:0:10,15:335,510:-68.3386,-41.7041,-38.6938,-26.9681,0,-22.4526	1/1:4:0,4,0:0:0:4,0:135,0:-12.4832,-1.20412,0,-12.4832,-1.20412,-12.4832	1/2:39:0,19,18:0:0:19,18:629,616:-100.895,-50.0272,-44.3076,-50.8909,0,-45.4724	1/1:42:0,40,0:0:0:40,0:1343,0:-120.895,-12.0412,0,-120.895,-12.0412,-120.895	1/1:92:0,90,1:0:0:90,1:2880,36:-259.116,-27.0927,0,-256.178,-24.1201,-255.877	1/1:6:0,6,0:0:0:6,0:199,0:-18.2349,-1.80618,0,-18.2349,-1.80618,-18.2349	1/2:116:0,61,52:0:0:61,52:1991,1826:-309.392,-148.636,-130.273,-160.768,0,-145.115	1/1:198:0,193,1:0:0:193,1:6573,36:-591.349,-58.0988,0,-588.412,-55.1519,-588.111	1/1:75:0,73,0:0:0:73,0:2431,0:-218.77,-21.9752,0,-218.77,-21.9752,-218.77	1/1:47:0,44,0:0:0:44,0:1476,0:-132.83,-13.2453,0,-132.83,-13.2453,-132.83	1/1:87:0,84,0:0:0:84,0:2791,0:-251.18,-25.2865,0,-251.18,-25.2865,-251.18	2/2:130:0,12,114:0:0:12,114:397,4002:-360.048,-327.943,-324.331,-34.3174,-2.17529,0	1/1:23:0,23,0:0:0:23,0:657,0:-59.4059,-6.92369,0,-59.4059,-6.92369,-59.4059	1/1:26:0,26,0:0:0:26,0:860,0:-77.6973,-7.82678,0,-77.6973,-7.82678,-77.6973	1/1:76:0,72,0:0:0:72,0:2165,0:-194.834,-21.6742,0,-194.834,-21.6742,-194.834	1/1:21:0,20,0:0:0:20,0:645,0:-58.0438,-6.0206,0,-58.0438,-6.0206,-58.0438	1/1:75:0,75,0:0:0:75,0:2527,0:-227.662,-22.5773,0,-227.662,-22.5773,-227.662	1/2:46:0,26,19:0:0:26,19:854,671:-123.77,-54.7791,-46.9523,-69.1145,0,-63.395	1/1:75:0,74,0:0:0:74,0:2471,0:-222.258,-22.2762,0,-222.258,-22.2762,-222.258	1/1:103:0,102,0:0:0:102,0:3401,0:-306.001,-30.7051,0,-306.001,-30.7051,-306.001	1/1:103:0,102,0:0:0:102,0:3384,0:-304.314,-30.7051,0,-304.314,-30.7051,-304.314	1/1:107:0,103,4:0:0:103,4:3419,140:-307.524,-31.0061,0,-296.133,-19.2656,-294.929	1/2:5:0,2,3:0:0:2,3:62,108:-14.1283,-9.17208,-8.57002,-5.28614,0,-4.38305	1/1:60:0,60,0:0:0:60,0:1960,0:-176.662,-18.0618,0,-176.662,-18.0618,-176.662	1/2:87:0,32,53:0:0:32,53:1060,1839:-235.238,-149.508,-139.875,-85.7421,0,-69.7876	1/1:113:0,107,3:0:0:107,3:3557,108:-320.021,-32.2102,0,-311.208,-23.361,-310.305	1/1:54:0,52,0:0:0:52,0:1622,0:-145.954,-15.6536,0,-145.954,-15.6536,-145.954	1/1:36:0,35,0:0:0:35,0:1133,0:-101.923,-10.5361,0,-101.923,-10.5361,-101.923	1/2:81:0,35,45:0:0:35,45:1112,1505:-211.381,-121.874,-111.338,-89.521,0,-75.9747	1/1:81:0,79,0:0:0:79,0:2511,0:-225.916,-23.7814,0,-225.916,-23.7814,-225.916	1/1:23:0,23,0:0:0:23,0:734,0:-66.3596,-6.92369,0,-66.3596,-6.92369,-66.3596	1/2:56:1,22,33:1:30:22,33:666,1097:-139.385,-86.3926,-82.1676,-50.9094,0,-43.3739	1/1:34:0,33,0:0:0:33,0:1018,0:-91.5588,-9.93399,0,-91.5588,-9.93399,-91.5588	1/2:44:0,23,18:0:0:23,18:689,588:-102.559,-47.4998,-40.5761,-55.0663,0,-49.6477	1/2:76:0,30,44:0:0:30,44:885,1472:-189.862,-119.27,-110.239,-70.6525,0,-57.4072	1/2:61:0,23,38:0:0:23,38:681,1318:-161.815,-107.479,-100.555,-54.6514,0,-43.2123	1/1:20:0,19,0:0:0:19,0:633,0:-56.9872,-5.71957,0,-56.9872,-5.71957,-56.9872	1/1:63:0,61,0:0:0:61,0:1979,0:-178.072,-18.3628,0,-178.072,-18.3628,-178.072
chr08	2516430	.	GTTG	CTTG,CTTA	157899	PASS	AB=0.458728,0.539919;ABP=46.7453,43.9245;AC=151,37;AF=0.803191,0.196809;AN=188;AO=5546,1749;CIGAR=1X3M,1X2M1X;DP=7312;DPB=7314.25;DPRA=0,1.56742;EPP=12046,3800.92;EPPR=9.52472;GTI=2;LEN=1,4;MEANALT=1.64894,2.19149;MQM=59.4338,59.7919;MQMR=60;NS=94;NUMALT=2;ODDS=0.503342;PAIRED=0,0;PAIREDR=0;PAO=4.5,4.5;PQA=152.5,152.5;PQR=0;PRO=0;QA=198191,62096;QR=102;RO=3;RPL=5546,1749;RPP=12046,3800.92;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12046,3800.92;SAR=5546,1749;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:86:1,85,0:1:30:85,0:3037,0:-270.105,-22.889,0,-270.406,-25.5876,-272.804	1/2:114:0,58,56:0:0:58,56:2073,1997:-332.144,-163.146,-145.687,-169.354,0,-152.497	1/1:119:0,119,0:0:0:119,0:4234,0:-381.037,-35.8226,0,-381.037,-35.8226,-381.037	1/2:91:0,38,52:0:0:38,52:1368,1834:-261.099,-149.473,-138.034,-111.768,0,-96.1143	1/2:53:0,28,25:0:0:28,25:1000,895:-154.729,-73.2171,-64.7883,-81.8122,0,-74.2864	1/1:64:0,64,0:0:0:64,0:2304,0:-207.62,-19.2659,0,-207.62,-19.2659,-207.62	1/1:179:0,179,0:0:0:179,0:6369,0:-573.039,-53.8844,0,-573.039,-53.8844,-573.039	1/1:49:0,48,1:0:0:48,1:1716,35:-154.331,-14.4494,0,-151.484,-11.2518,-151.183	1/1:82:0,82,0:0:0:82,0:2929,0:-263.7,-24.6845,0,-263.7,-24.6845,-263.7	1/1:50:1,49,0:1:36:49,0:1756,0:-154.715,-11.4532,0,-155.016,-14.7505,-157.954	1/1:47:0,47,0:0:0:47,0:1688,0:-152.009,-14.1484,0,-152.009,-14.1484,-152.009	1/1:58:0,58,0:0:0:58,0:2073,0:-186.792,-17.4597,0,-186.792,-17.4597,-186.792	1/1:113:0,113,0:0:0:113,0:4053,0:-364.655,-34.0164,0,-364.655,-34.0164,-364.655	1/1:45:0,44,0:0:0:44,0:1580,0:-142.118,-13.2453,0,-142.118,-13.2453,-142.118	1/1:43:0,43,0:0:0:43,0:1525,0:-137.508,-12.9443,0,-137.508,-12.9443,-137.508	1/1:113:0,113,0:0:0:113,0:4068,0:-366.254,-34.0164,0,-366.254,-34.0164,-366.254	1/1:59:0,59,0:0:0:59,0:2116,0:-190.689,-17.7608,0,-190.689,-17.7608,-190.689	1/1:37:0,37,0:0:0:37,0:1317,0:-118.792,-11.1381,0,-118.792,-11.1381,-118.792	1/1:240:0,238,1:0:0:238,1:8517,36:-766.007,-71.6451,0,-763.069,-68.748,-762.768	1/1:93:0,93,0:0:0:93,0:3325,0:-299.365,-27.9958,0,-299.365,-27.9958,-299.365	1/2:123:0,79,44:0:0:79,44:2825,1563:-357.915,-127.654,-103.873,-230.558,0,-217.312	1/1:13:0,13,0:0:0:13,0:453,0:-41.0996,-3.91339,0,-41.0996,-3.91339,-41.0996	1/2:98:0,56,42:0:0:56,42:2012,1506:-287.183,-123.19,-106.333,-164.351,0,-151.708	1/1:44:0,44,0:0:0:44,0:1572,0:-141.707,-13.2453,0,-141.707,-13.2453,-141.707	1/2:308:0,132,176:0:0:132,176:4687,6251:-890.472,-508.884,-469.148,-381.943,0,-328.962	1/2:137:0,53,84:0:0:53,84:1908,2968:-397.729,-242.067,-226.113,-156.019,0,-130.732	1/1:23:0,23,0:0:0:23,0:824,0:-74.468,-6.92369,0,-74.468,-6.92369,-74.468	1/1:156:0,155,0:0:0:155,0:5527,0:-496.024,-46.6597,0,-496.024,-46.6597,-496.024	1/1:136:0,129,6:0:0:129,6:4625,215:-415.742,-38.8329,0,-398.208,-21.2995,-396.401	1/2:69:0,30,39:0:0:30,39:1080,1369:-199.815,-111.71,-102.679,-88.4042,0,-76.664	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:5:0,5,0:0:0:5,0:180,0:-16.5474,-1.50515,0,-16.5474,-1.50515,-16.5474	1/2:16:0,6,10:0:0:6,10:216,354:-46.7379,-29.1191,-27.3129,-17.976,0,-14.9657	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:171:0,171,0:0:0:171,0:6148,0:-552.974,-51.4761,0,-552.974,-51.4761,-552.974	1/2:220:0,108,111:0:0:108,111:3809,3952:-632.143,-322.04,-289.528,-310.038,0,-276.624	1/2:87:0,34,53:0:0:34,53:1224,1886:-253.556,-153.69,-143.455,-100.224,0,-84.2693	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:107:0,49,58:0:0:49,58:1756,2060:-310.922,-167.713,-152.963,-143.566,0,-126.106	1/2:31:0,21,10:0:0:21,10:756,360:-91.407,-29.734,-23.4124,-62.0328,0,-59.0225	1/2:104:0,31,73:0:0:31,73:1116,2593:-302.697,-211.645,-202.313,-91.4106,0,-69.4354	1/2:58:0,27,31:0:0:27,31:972,1101:-169.363,-90.0684,-81.9406,-79.6516,0,-70.3197	1/1:49:0,49,0:0:0:49,0:1760,0:-158.664,-14.7505,0,-158.664,-14.7505,-158.664	1/2:67:0,29,38:0:0:29,38:1044,1331:-193.802,-108.612,-99.8826,-85.5449,0,-74.1058	1/2:126:0,63,63:0:0:63,63:2249,2210:-363.514,-180.189,-161.225,-183.678,0,-164.713	1/2:133:0,67,66:0:0:67,66:2348,2309:-377.875,-186.838,-166.669,-191.386,0,-171.518	1/1:69:1,67,0:1:36:67,0:2393,0:-211.982,-17.2316,0,-212.283,-20.169,-215.221	1/1:114:0,113,1:0:0:113,1:4038,36:-362.944,-34.0164,0,-360.007,-30.7202,-359.706	1/1:77:0,77,0:0:0:77,0:2708,0:-243.376,-23.1793,0,-243.376,-23.1793,-243.376	1/2:7:0,3,4:0:0:3,4:108,143:-20.8306,-12.0173,-11.1142,-9.17208,0,-7.96796	1/2:122:0,62,60:0:0:62,60:2220,2131:-355.038,-173.997,-155.333,-181.397,0,-163.335	1/2:31:0,9,22:0:0:9,22:324,774:-89.7803,-63.3588,-60.6495,-26.7788,0,-20.1562	1/2:11:0,4,7:0:0:4,7:144,249:-32.3996,-20.6484,-19.4442,-12.1095,0,-10.0023	1/2:86:0,31,54:0:0:31,54:1116,1926:-248.087,-157.031,-147.699,-91.0841,0,-74.8285	1/2:25:0,10,15:0:0:10,15:334,536:-70.8161,-44.0597,-41.0494,-27.0978,0,-22.5823	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:43:0,21,22:0:0:21,22:737,784:-124.217,-64.2439,-57.9222,-60.3266,0,-53.704	1/1:42:0,42,0:0:0:42,0:1508,0:-135.99,-12.6433,0,-135.99,-12.6433,-135.99	1/1:117:0,116,1:0:0:116,1:4138,36:-372.114,-34.9195,0,-369.177,-31.6222,-368.876	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:134:0,69,65:0:0:69,65:2446,2314:-388.214,-188.953,-168.182,-199.616,0,-180.049	1/1:212:0,210,1:0:0:210,1:7522,36:-676.627,-63.2163,0,-673.689,-60.2789,-673.388	1/1:77:0,76,0:0:0:76,0:2726,0:-245.195,-22.8783,0,-245.195,-22.8783,-245.195	1/1:49:0,49,0:0:0:49,0:1752,0:-157.962,-14.7505,0,-157.962,-14.7505,-157.962	1/1:93:0,93,0:0:0:93,0:3329,0:-299.607,-27.9958,0,-299.607,-27.9958,-299.607	2/2:143:0,11,132:0:0:11,132:396,4674:-420.306,-387.994,-384.683,-39.736,-7.06454,0	1/1:32:0,32,0:0:0:32,0:1152,0:-103.749,-9.63296,0,-103.749,-9.63296,-103.749	1/1:31:0,31,0:0:0:31,0:1082,0:-97.6765,-9.33193,0,-97.6765,-9.33193,-97.6765	1/1:80:0,80,0:0:0:80,0:2872,0:-258.294,-24.0824,0,-258.294,-24.0824,-258.294	1/1:22:0,22,0:0:0:22,0:788,0:-71.2378,-6.62266,0,-71.2378,-6.62266,-71.2378	1/1:80:0,79,1:0:0:79,1:2811,35:-252.583,-23.7814,0,-249.736,-20.5846,-249.435	1/2:51:0,27,23:0:0:27,23:968,820:-145.842,-66.8964,-58.7686,-78.9993,0,-72.0756	1/1:80:0,80,0:0:0:80,0:2819,0:-253.719,-24.0824,0,-253.719,-24.0824,-253.719	1/1:110:0,109,0:0:0:109,0:3912,0:-351.804,-32.8123,0,-351.804,-32.8123,-351.804	1/1:109:0,109,0:0:0:109,0:3878,0:-348.747,-32.8123,0,-348.747,-32.8123,-348.747	1/1:115:0,111,4:0:0:111,4:3992,140:-358.944,-33.4143,0,-347.554,-21.6739,-346.35	1/2:6:0,2,4:0:0:2,4:72,142:-17.8016,-11.9251,-11.323,-6.23466,0,-5.03054	1/1:65:0,65,0:0:0:65,0:2298,0:-207.056,-19.567,0,-207.056,-19.567,-207.056	1/2:97:0,37,60:0:0:37,60:1305,2120:-279.265,-173.007,-161.869,-106.611,0,-88.5495	1/1:124:0,120,3:0:0:120,3:4274,107:-384.384,-36.1236,0,-375.662,-27.2911,-374.759	1/1:70:0,69,1:0:0:69,1:2484,36:-223.427,-20.7711,0,-220.489,-17.4738,-220.188	1/1:52:0,52,0:0:0:52,0:1872,0:-168.746,-15.6536,0,-168.746,-15.6536,-168.746	1/2:100:0,43,57:0:0:43,57:1533,2041:-291.744,-166.794,-153.85,-125.306,0,-108.148	1/1:108:0,106,1:0:0:106,1:3791,36:-340.687,-31.9092,0,-337.75,-28.9718,-337.449	1/1:26:0,26,0:0:0:26,0:928,0:-83.8364,-7.82678,0,-83.8364,-7.82678,-83.8364	1/2:70:0,29,41:0:0:29,41:1036,1472:-204.896,-120.433,-111.703,-84.8208,0,-72.4785	1/1:49:0,49,0:0:0:49,0:1760,0:-158.676,-14.7505,0,-158.676,-14.7505,-158.676	1/2:55:0,31,24:0:0:31,24:1116,860:-161.326,-70.4975,-61.1655,-91.1874,0,-83.9627	1/2:89:0,37,52:0:0:37,52:1332,1856:-260.233,-151.607,-140.469,-108.984,0,-93.3305	1/2:83:0,29,54:0:0:29,54:1038,1931:-242.187,-157.811,-149.081,-84.7327,0,-68.477	1/1:20:0,20,0:0:0:20,0:720,0:-65.1103,-6.0206,0,-65.1103,-6.0206,-65.1103	1/1:76:0,76,0:0:0:76,0:2736,0:-246.463,-22.8783,0,-246.463,-22.8783,-246.463
chr08	2523297	.	T	C	162398	PASS	AB=0.518837;ABP=13.4;AC=153;AF=0.81383;AN=188;AO=7494;CIGAR=1X;DP=9139;DPB=9139;DPRA=0;EPP=16267.3;EPPR=3557.71;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9879;MQMR=59.9866;NS=94;NUMALT=1;ODDS=0.185485;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=267687;QR=58684;RO=1637;RPL=0;RPP=16276;RPPR=3557.71;RPR=7494;RUN=1;SAF=7493;SAP=16267.3;SAR=1;SRF=1637;SRP=3557.71;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:168:0,168:0:0:168:5982:-538.487,-50.573,0	0/1:174:75,99:75:2692:99:3518:-263.96,0,-190.145	1/1:280:0,280:0:0:280:10031:-902.724,-84.2884,0	0/1:37:18,19:18:648:19:684:-50.7522,0,-47.5138	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	1/1:110:0,110:0:0:110:3925:-353.442,-33.1133,0	1/1:169:0,169:0:0:169:6036:-543.344,-50.8741,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:165:0,165:0:0:165:5915:-532.458,-49.67,0	1/1:70:0,70:0:0:70:2499:-225.162,-21.0721,0	1/1:93:0,93:0:0:93:3322:-299.198,-27.9958,0	1/1:76:0,75:0:0:75:2662:-239.466,-22.5773,0	1/1:96:0,96:0:0:96:3435:-309.363,-28.8989,0	1/1:75:0,75:0:0:75:2679:-241.355,-22.5773,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:96:0,95:0:0:95:3408:-306.574,-28.5979,0	1/1:73:0,73:0:0:73:2603:-234.517,-21.9752,0	1/1:48:0,48:0:0:48:1698:-153.105,-14.4494,0	1/1:177:0,175:0:0:175:6236:-560.979,-52.6803,0	1/1:90:0,90:0:0:90:3212:-289.302,-27.0927,0	0/1:50:22,28:22:792:28:988:-74.1824,0,-56.5542	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:42:14,28:14:504:28:984:-76.2301,0,-33.0548	1/1:30:0,30:0:0:30:1062:-95.8905,-9.0309,0	0/1:351:148,203:148:5293:203:7272:-548.869,0,-370.842	0/1:117:47,70:47:1684:70:2500:-190.032,0,-116.627	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:188:0,188:0:0:188:6712:-604.158,-56.5936,0	1/1:108:3,105:3:108:105:3752:-327.806,-22.4361,0	0/1:65:28,37:28:1004:37:1324:-99.8951,0,-71.1089	0/1:6:5,1:5:180:1:32:-1.39313,0,-14.7459	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:241:0,241:0:0:241:8608:-774.716,-72.5482,0	0/1:143:62,81:62:2220:81:2886:-216.928,0,-157.017	0/1:88:58,30:58:2076:30:1072:-70.3018,0,-160.62	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:146:62,84:62:2220:84:3012:-227.36,0,-156.114	0/1:42:12,30:12:432:30:1072:-84.1492,0,-26.5779	0/1:68:43,25:43:1548:25:885:-59.4981,0,-119.143	0/1:85:39,46:39:1404:46:1635:-121.85,0,-101.072	1/1:77:0,77:0:0:77:2763:-248.91,-23.1793,0	0/1:29:17,12:17:612:12:413:-28.768,0,-46.6836	0/1:157:76,81:76:2728:81:2904:-214.334,0,-198.501	0/1:248:123,125:123:4401:125:4424:-323.681,0,-321.517	1/1:98:0,98:0:0:98:3508:-315.93,-29.5009,0	1/1:277:0,275:0:0:275:9801:-881.681,-82.7833,0	1/1:114:0,113:0:0:113:4045:-363.877,-34.0164,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:178:78,100:78:2800:100:3576:-268.464,0,-198.656	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:188:75,113:75:2681:113:4029:-306.205,0,-184.94	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:31:20,11:20:705:11:396:-26.6508,0,-54.4409	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:118:0,118:0:0:118:4231:-380.968,-35.5215,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:430:216,214:216:7744:214:7638:-558.014,0,-567.548	1/1:212:1,211:1:36:211:7539:-674.954,-60.2201,0	1/1:106:1,105:1:36:105:3755:-334.551,-28.3109,0	1/1:114:0,113:0:0:113:4035:-362.978,-34.0164,0	1/1:122:0,122:0:0:122:4362:-392.755,-36.7257,0	0/1:110:86,24:86:3080:24:860:-44.2372,0,-244.315	1/1:28:2,26:2:72:26:923:-76.55,-1.59212,0	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	1/1:116:1,115:1:36:115:4111:-366.577,-31.3212,0	1/1:21:0,21:0:0:21:743:-67.1933,-6.32163,0	1/1:86:0,86:0:0:86:3076:-276.982,-25.8886,0	0/1:75:40,35:40:1436:35:1252:-90.4078,0,-106.96	1/1:111:0,111:0:0:111:3979:-358.3,-33.4143,0	1/1:250:0,250:0:0:250:8940:-804.582,-75.2575,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:214:3,211:3:108:211:7560:-670.363,-54.3453,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:131:1,130:1:36:130:4633:-413.535,-35.8367,0	0/1:55:28,27:28:996:27:968:-70.8807,0,-73.3982	1/1:241:1,240:1:36:240:8591:-769.588,-68.95,0	1/1:111:0,111:0:0:111:3954:-356.052,-33.4143,0	1/1:57:0,57:0:0:57:2031:-183.062,-17.1587,0	0/1:102:51,51:51:1836:51:1832:-134.456,0,-134.816	1/1:171:1,170:1:36:170:6070:-542.804,-47.8779,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	0/1:72:28,44:28:1008:44:1576:-120.457,0,-69.3622	1/1:71:1,70:1:36:70:2495:-221.204,-17.7749,0	0/1:33:15,18:15:540:18:635:-47.543,0,-39.0025	0/1:85:37,48:37:1324:48:1728:-130.218,0,-93.8745	0/1:78:55,23:55:1976:23:803:-49.108,0,-154.634	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:117:0,117:0:0:117:4183:-376.652,-35.2205,0
chr08	2523356	.	CAT	CAC,GAC	133579	PASS	AB=0.400429,0.593991;ABP=203.658,181.802;AC=150,36;AF=0.806452,0.193548;AN=186;AO=4804,1399;CIGAR=2M1X,1X1M1X;DP=6230;DPB=6230;DPRA=22.5616,1.04029;EPP=10426.1,3032.22;EPPR=7.35324;GTI=3;LEN=1,3;MEANALT=1.73913,2.26667;MQM=59.994,59.9821;MQMR=60;NS=93;NUMALT=2;ODDS=0.0912099;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=170641,48386;QR=72;RO=2;RPL=1,1;RPP=10426.1,3032.22;RPPR=7.35324;RPR=4803,1398;RUN=1,1;SAF=2,2;SAP=10417.4,3023.55;SAR=4802,1397;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,16,1:0:0:16,1:563,36:-50.6398,-4.81648,0,-47.7019,-1.51924,-47.4009	1/1:29:0,27,0:0:0:27,0:968,0:-87.1381,-8.12781,0,-87.1381,-8.12781,-87.1381	1/2:92:0,35,55:0:0:35,55:1256,1912:-257.974,-155.518,-144.982,-102.539,0,-85.9825	1/1:171:0,171,0:0:0:171,0:6134,0:-552.158,-51.4761,0,-552.158,-51.4761,-552.158	1/2:15:0,3,12:0:0:3,12:108,424:-43.6971,-34.8835,-33.9804,-9.17208,0,-5.55972	1/2:25:0,7,18:0:0:7,18:252,619:-71.1782,-50.6118,-48.5046,-20.9217,0,-15.5032	1/1:66:0,66,0:0:0:66,0:2338,0:-210.676,-19.868,0,-210.676,-19.868,-210.676	1/1:46:0,46,0:0:0:46,0:1616,0:-145.726,-13.8474,0,-145.726,-13.8474,-145.726	1/1:108:0,108,0:0:0:108,0:3815,0:-343.547,-32.5112,0,-343.547,-32.5112,-343.547	1/1:74:0,74,0:0:0:74,0:2630,0:-236.947,-22.2762,0,-236.947,-22.2762,-236.947	1/1:50:0,50,0:0:0:50,0:1767,0:-159.313,-15.0515,0,-159.313,-15.0515,-159.313	1/1:106:0,105,0:0:0:105,0:3695,0:-332.544,-31.6082,0,-332.544,-31.6082,-332.544	1/1:85:0,85,0:0:0:85,0:2992,0:-269.513,-25.5876,0,-269.513,-25.5876,-269.513	1/1:50:0,50,0:0:0:50,0:1777,0:-160.211,-15.0515,0,-160.211,-15.0515,-160.211	1/1:84:0,84,0:0:0:84,0:2983,0:-268.702,-25.2865,0,-268.702,-25.2865,-268.702	1/1:40:0,40,0:0:0:40,0:1410,0:-127.196,-12.0412,0,-127.196,-12.0412,-127.196	1/1:32:0,32,0:0:0:32,0:1123,0:-101.377,-9.63296,0,-101.377,-9.63296,-101.377	1/1:27:0,26,0:0:0:26,0:932,0:-83.8871,-7.82678,0,-83.8871,-7.82678,-83.8871	1/1:27:0,26,0:0:0:26,0:921,0:-82.9706,-7.82678,0,-82.9706,-7.82678,-82.9706	1/1:74:0,73,1:0:0:73,1:2588,36:-232.808,-21.9752,0,-229.87,-18.6779,-229.569	1/1:238:1,237,0:1:36:237,0:8434,0:-755.466,-68.0469,0,-755.767,-71.3441,-758.705	1/2:59:0,20,38:0:0:20,38:712,1336:-166.919,-108.886,-102.866,-58.1691,0,-46.73	1/1:41:0,41,0:0:0:41,0:1453,0:-131.064,-12.3422,0,-131.064,-12.3422,-131.064	1/2:11:0,3,8:0:0:3,8:108,281:-32.037,-23.2224,-22.3193,-9.17208,0,-6.76384	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9144,-8.72987,0,-93.9144,-8.72987,-93.9144	1/2:176:0,64,110:0:0:64,110:2274,3821:-496.002,-310.699,-291.433,-185.373,0,-152.26	1/2:185:0,74,111:0:0:74,111:2615,3868:-527.874,-314.904,-292.627,-213.322,0,-179.907	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/1:187:0,185,2:0:0:185,2:6610,72:-594.62,-55.6906,0,-588.745,-49.4559,-588.143	1/1:35:0,34,1:0:0:34,1:1216,36:-109.387,-10.235,0,-106.449,-6.93778,-106.148	1/2:84:0,29,55:0:0:29,55:1031,1878:-236.759,-152.737,-144.007,-84.3727,0,-67.8161	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	.:.:.:.:.:.:.:.	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:14:0,14,0:0:0:14,0:482,0:-43.7061,-4.21442,0,-43.7061,-4.21442,-43.7061	1/1:213:0,211,0:0:0:211,0:7502,0:-674.946,-63.5173,0,-674.946,-63.5173,-674.946	1/2:32:0,16,16:0:0:16,16:568,568:-92.9154,-46.6348,-41.8183,-46.6354,0,-41.8189	1/2:59:0,30,29:0:0:30,29:1053,1022:-169.259,-83.5625,-74.5316,-86.0485,0,-77.3187	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:66:0,20,44:0:0:20,44:720,1527:-182.867,-124.114,-118.094,-58.7483,0,-45.503	1/2:31:0,13,18:0:0:13,18:468,648:-91.4198,-53.2333,-49.32,-38.5463,0,-33.1277	1/2:57:0,15,42:0:0:15,42:536,1457:-162.483,-118.778,-114.263,-44.0594,0,-31.4161	1/2:69:0,29,40:0:0:29,40:1036,1358:-194.945,-110.471,-101.741,-84.824,0,-72.7828	1/1:53:0,53,0:0:0:53,0:1879,0:-169.388,-15.9546,0,-169.388,-15.9546,-169.388	1/2:78:0,33,45:0:0:33,45:1188,1510:-219.582,-122.637,-112.703,-97.2946,0,-83.7483	1/2:84:0,31,53:0:0:31,53:1089,1812:-236.041,-147.403,-138.071,-88.9864,0,-73.0318	1/2:150:0,58,92:0:0:58,92:2076,3117:-422.362,-253.061,-235.602,-169.651,0,-141.956	1/1:56:0,55,1:0:0:55,1:1964,36:-176.675,-16.5567,0,-173.738,-13.2594,-173.437	1/1:57:0,55,1:0:0:55,1:1954,36:-175.828,-16.5567,0,-172.89,-13.5643,-172.589	1/1:23:0,23,0:0:0:23,0:820,0:-74.1225,-6.92369,0,-74.1225,-6.92369,-74.1225	1/2:8:0,4,4:0:0:4,4:144,141:-23.5862,-11.8328,-10.6287,-12.1095,0,-10.9054	1/2:56:0,28,28:0:0:28,28:991,949:-158.016,-77.2877,-68.8589,-81.0747,0,-72.6458	1/2:24:0,11,13:0:0:11,13:396,466:-70.6776,-38.3653,-35.054,-32.6714,0,-28.758	1/2:10:0,3,7:0:0:3,7:108,242:-28.8259,-20.0094,-19.1063,-9.17208,0,-7.06487	1/2:115:0,45,68:0:0:45,68:1602,2332:-319.921,-189.349,-175.802,-130.601,0,-110.131	1/2:35:0,9,26:0:0:9,26:320,906:-100.106,-74.0263,-71.3171,-26.4331,0,-18.6063	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.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chr08	2523369	.	C	T	106235	PASS	AB=0.411054;ABP=162.162;AC=150;AF=0.806452;AN=186;AO=4920;CIGAR=1X;DP=6301;DPB=6301;DPRA=22.8188;EPP=10669.3;EPPR=2990.96;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.9882;MQMR=59.9877;NS=93;NUMALT=1;ODDS=0.224713;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175751;QR=49305;RO=1380;RPL=2;RPP=10669.3;RPPR=2990.96;RPR=4918;RUN=1;SAF=2;SAP=10669.3;SAR=4918;SRF=2;SRP=2982.3;SRR=1378;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:1,18:1:36:18:644:-54.6923,-2.1213,0	1/1:29:0,29:0:0:29:1021:-92.2003,-8.72987,0	0/1:95:55,40:55:1980:40:1436:-100.94,0,-149.807	1/1:172:0,172:0:0:172:6127:-551.529,-51.7772,0	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/1:24:17,7:17:608:7:252:-15.8042,0,-47.8273	1/1:70:0,70:0:0:70:2500:-225.251,-21.0721,0	1/1:50:0,50:0:0:50:1785:-160.931,-15.0515,0	1/1:116:0,116:0:0:116:4156:-374.218,-34.9195,0	1/1:76:2,74:2:72:74:2652:-232.089,-16.0416,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:107:0,107:0:0:107:3818:-343.817,-32.2102,0	1/1:86:0,86:0:0:86:3074:-276.886,-25.8886,0	1/1:49:0,49:0:0:49:1728:-155.802,-14.7505,0	1/1:85:0,85:0:0:85:3041:-273.917,-25.5876,0	1/1:42:0,42:0:0:42:1499:-135.204,-12.6433,0	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:28:0,28:0:0:28:993:-89.681,-8.42884,0	1/1:72:1,71:1:36:71:2544:-225.612,-18.0759,0	1/1:243:0,243:0:0:243:8689:-782.001,-73.1503,0	0/1:59:39,20:39:1404:20:716:-47.0069,0,-108.899	1/1:41:0,41:0:0:41:1456:-131.336,-12.3422,0	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:172:108,64:108:3856:64:2281:-153.773,0,-295.46	0/1:186:110,76:110:3943:76:2716:-188.692,0,-299.069	1/1:27:0,27:0:0:27:958:-86.5358,-8.12781,0	1/1:197:2,195:2:72:195:6942:-618.009,-52.4662,0	1/1:36:1,35:1:36:35:1244:-108.666,-7.23881,0	0/1:86:55,31:55:1957:31:1112:-74.5028,0,-150.515	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:219:0,219:0:0:219:7829:-704.635,-65.9256,0	0/1:33:16,17:16:576:17:612:-45.4794,0,-42.241	0/1:62:29,33:29:1031:33:1180:-87.8442,0,-74.4388	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:66:46,20:46:1640:20:720:-45.2608,0,-128.021	0/1:31:18,12:18:648:12:432:-29.8305,0,-49.2612	0/1:56:41,15:41:1476:15:510:-29.3619,0,-116.278	0/1:65:37,28:37:1316:28:1008:-71.4694,0,-99.1749	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:78:45,33:45:1593:33:1188:-83.7483,0,-120.178	0/1:79:49,30:49:1756:30:1076:-73.3715,0,-134.543	0/1:151:92,59:92:3292:59:2109:-144.623,0,-251.044	1/1:56:1,55:1:36:55:1972:-174.157,-13.2594,0	1/1:59:1,58:1:36:58:2076:-183.512,-14.1625,0	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:54:27,27:27:957:27:972:-71.5423,0,-70.1882	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:113:68,45:68:2423:45:1607:-110.903,0,-184.309	0/1:34:25,9:25:896:9:324:-19.2708,0,-70.7253	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:37:0,37:0:0:37:1305:-117.749,-11.1381,0	1/1:85:1,84:1:36:84:2973:-264.201,-21.9893,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:177:84,93:84:3016:93:3336:-247.175,0,-218.388	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:65:0,65:0:0:65:2333:-210.23,-19.567,0	1/1:119:0,119:0:0:119:4268:-384.297,-35.8226,0	0/1:70:55,15:55:1968:15:532:-27.141,0,-156.323	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:39:0,39:0:0:39:1369:-123.504,-11.7402,0	1/1:42:0,42:0:0:42:1485:-133.943,-12.6433,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:140:0,140:0:0:140:5025:-452.395,-42.1442,0	0/1:95:51,44:51:1799:44:1580:-113.894,0,-133.591	1/1:149:0,149:0:0:149:5325:-479.383,-44.8535,0	1/1:113:0,113:0:0:113:4030:-362.886,-34.0164,0	1/1:42:0,42:0:0:42:1491:-134.484,-12.6433,0	1/1:62:1,61:1:36:61:2168:-191.786,-15.0656,0	0/1:6:3,3:3:99:3:93:-6.87055,0,-7.4304	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:97:55,42:55:1972:42:1508:-106.815,0,-148.555	1/1:127:0,127:0:0:127:4560:-410.565,-38.2308,0	1/1:40:0,40:0:0:40:1421:-128.185,-12.0412,0	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:61:31,30:31:1095:30:1080:-79.1504,0,-80.4963	1/1:154:1,153:1:36:153:5472:-489.01,-42.7603,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:91:49,42:49:1732:42:1487:-106.728,0,-128.771	1/1:62:0,62:0:0:62:2208:-198.981,-18.6639,0	0/1:38:19,19:19:684:19:680:-50.09,0,-50.4512	0/1:92:42,50:42:1496:50:1792:-133.868,0,-107.24	0/1:71:51,20:51:1824:20:708:-42.6725,0,-143.068	1/1:171:0,171:0:0:171:6086:-547.843,-51.4761,0	1/1:124:2,122:2:72:122:4384:-387.895,-30.491,0
chr08	2553931	.	T	A	70147.9	PASS	AB=0.489614;ABP=4.58897;AC=151;AF=0.811828;AN=186;AO=3282;CIGAR=1X;DP=4152;DPB=4152;DPRA=0;EPP=7129.78;EPPR=1885.68;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.5868;MQMR=59.8016;NS=93;NUMALT=1;ODDS=2.8873;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117109;QR=31115;RO=867;RPL=0;RPP=7129.78;RPPR=1885.68;RPR=3282;RUN=1;SAF=3282;SAP=7129.78;SAR=0;SRF=867;SRP=1885.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:712:-64.3929,-6.0206,0	1/1:35:0,35:0:0:35:1240:-111.882,-10.5361,0	0/1:61:27,34:27:972:34:1220:-91.7321,0,-69.4276	1/1:96:0,96:0:0:96:3411:-307.095,-28.8989,0	0/1:46:26,20:26:936:20:716:-50.9194,0,-70.7121	0/1:41:23,18:23:824:18:648:-46.3015,0,-62.1402	1/1:48:0,48:0:0:48:1712:-154.362,-14.4494,0	1/1:59:0,59:0:0:59:2120:-191.031,-17.7608,0	1/1:45:0,45:0:0:45:1593:-143.605,-13.5464,0	1/1:31:0,31:0:0:31:1112:-100.384,-9.33193,0	1/1:23:0,23:0:0:23:828:-74.8265,-6.92369,0	1/1:44:0,44:0:0:44:1576:-142.122,-13.2453,0	1/1:37:0,37:0:0:37:1327:-119.695,-11.1381,0	1/1:39:0,39:0:0:39:1400:-126.281,-11.7402,0	1/1:16:0,16:0:0:16:576:-51.9794,-4.81648,0	1/1:21:0,21:0:0:21:756:-68.3657,-6.32163,0	1/1:18:0,18:0:0:18:644:-58.2839,-5.41854,0	1/1:23:1,22:1:36:22:788:-67.6327,-3.32542,0	1/1:16:0,16:0:0:16:561:-50.8169,-4.81648,0	1/1:56:1,55:1:36:55:1961:-173.077,-13.2594,0	1/1:45:0,45:0:0:45:1608:-144.976,-13.5464,0	0/1:53:34,19:34:1212:19:676:-45.2125,0,-93.4317	1/1:27:0,27:0:0:27:972:-87.7803,-8.12781,0	0/1:43:16,27:16:576:27:968:-74.4931,0,-39.2307	1/1:60:0,60:0:0:60:2156:-194.298,-18.0618,0	0/1:189:91,98:91:3264:98:3500:-258.275,0,-236.998	0/1:83:36,47:36:1288:47:1669:-125.51,0,-91.2372	1/1:16:0,16:0:0:16:576:-52.1704,-4.81648,0	1/1:109:0,109:0:0:109:3897:-350.669,-32.8123,0	1/1:98:5,93:5:180:93:3317:-282.18,-12.9489,0	0/1:87:37,50:37:1332:50:1788:-135.004,0,-93.9928	0/1:4:1,3:1:32:3:104:-8.49868,0,-1.97465	1/1:11:0,11:0:0:11:392:-35.6154,-3.31133,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:6:0,6:0:0:6:212:-19.4165,-1.80618,0	.:.:.:.:.:.:.:.	1/1:81:0,81:0:0:81:2908:-261.919,-24.3834,0	0/1:143:75,67:75:2692:67:2385:-171.786,0,-199.15	0/1:24:11,13:11:392:13:468:-35.2349,0,-28.3953	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:51:31,20:31:1112:20:701:-48.0592,0,-85.0388	0/1:11:5,6:5:176:6:216:-16.4745,0,-12.8737	0/1:80:49,31:49:1764:31:1112:-76.2951,0,-134.96	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:21:0,21:0:0:21:752:-67.9923,-6.32163,0	0/1:51:16,35:16:576:35:1248:-97.2696,0,-36.8225	0/1:47:31,16:31:1116:16:549:-35.5676,0,-86.6015	0/1:102:56,46:56:2012:46:1637:-116.717,0,-150.589	1/1:63:0,63:0:0:63:2203:-198.527,-18.9649,0	1/1:39:0,39:0:0:39:1392:-125.56,-11.7402,0	1/1:85:0,85:0:0:85:3052:-274.894,-25.5876,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:86:42,44:42:1508:44:1580:-116.517,0,-110.125	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:46:25,21:25:900:21:752:-54.1527,0,-67.4736	0/1:23:8,15:8:288:15:536:-41.6507,0,-19.3437	1/1:3:0,3:0:0:3:108:-10.0742,-0.90309,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:39:0,39:0:0:39:1389:-124.502,-11.7402,0	1/1:99:0,99:0:0:99:3558:-320.397,-29.802,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/1:94:42,52:42:1508:52:1860:-139.189,0,-107.718	1/1:60:0,58:0:0:58:2057:-185.028,-17.4597,0	1/1:46:0,46:0:0:46:1648:-148.591,-13.8474,0	1/1:49:0,49:0:0:49:1722:-155.24,-14.7505,0	1/1:64:0,64:0:0:64:2270:-204.234,-19.2659,0	0/1:60:38,22:38:1364:22:788:-53.0942,0,-104.985	1/1:15:0,15:0:0:15:536:-48.5656,-4.51545,0	1/1:35:1,34:1:36:34:1204:-105.038,-6.93778,0	1/1:51:0,51:0:0:51:1822:-164.258,-15.3525,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:81:0,81:0:0:81:2888:-260.135,-24.3834,0	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0582	1/1:113:0,113:0:0:113:4043:-364.027,-34.0164,0	1/1:65:0,65:0:0:65:2336:-210.497,-19.567,0	1/1:41:0,41:0:0:41:1463:-131.963,-12.3422,0	1/1:29:0,29:0:0:29:1036:-93.5187,-8.72987,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:32:0,32:0:0:32:1133:-102.268,-9.63296,0	0/1:42:21,21:21:756:21:748:-55.002,0,-55.7221	1/1:122:0,122:0:0:122:4361:-392.617,-36.7257,0	1/1:44:0,44:0:0:44:1576:-142.127,-13.2453,0	1/1:19:0,19:0:0:19:665:-60.1727,-5.71957,0	0/1:25:16,9:16:572:9:324:-21.9801,0,-44.0592	1/1:45:0,45:0:0:45:1608:-145.004,-13.5464,0	1/1:22:0,22:0:0:22:777:-70.1805,-6.62266,0	0/1:28:15,13:15:527:13:468:-34.0226,0,-39.3313	1/1:26:0,26:0:0:26:924:-83.4686,-7.82678,0	0/1:24:10,14:10:360:14:489:-37.1133,0,-25.5196	0/1:45:21,24:21:756:24:858:-63.9891,0,-54.8209	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	1/1:34:0,34:0:0:34:1205:-108.721,-10.235,0	1/1:24:0,24:0:0:24:841:-76.004,-7.22472,0
chr08	2564393	.	G	T	73138.8	PASS	AB=0.474588;ABP=11.1772;AC=149;AF=0.801075;AN=186;AO=3483;CIGAR=1X;DP=4256;DPB=4256;DPRA=46.25;EPP=7566.25;EPPR=1677.22;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.6589;MQMR=59.3398;NS=93;NUMALT=1;ODDS=2.02251;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121587;QR=27061;RO=771;RPL=0;RPP=7566.25;RPPR=1677.22;RPR=3483;RUN=1;SAF=0;SAP=7566.25;SAR=3483;SRF=0;SRP=1677.22;SRR=771;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:229:-20.9295,-2.10721,0	1/1:31:0,31:0:0:31:1091:-98.4987,-9.33193,0	0/1:52:28,24:28:1000:24:848:-60.9828,0,-74.6089	1/1:113:0,113:0:0:113:3982:-358.568,-34.0164,0	0/1:6:2,4:2:72:4:136:-10.7694,0,-5.02195	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:61:0,61:0:0:61:2154:-194.12,-18.3628,0	1/1:46:1,45:1:27:45:1552:-137.265,-11.1476,0	1/1:52:0,52:0:0:52:1826:-164.617,-15.6536,0	1/1:60:0,60:0:0:60:2097:-188.994,-18.0618,0	1/1:39:0,39:0:0:39:1346:-121.428,-11.7402,0	1/1:72:0,71:0:0:71:2438:-219.305,-21.3731,0	1/1:69:0,69:0:0:69:2413:-217.423,-20.7711,0	1/1:36:0,36:0:0:36:1263:-113.966,-10.8371,0	1/1:51:0,51:0:0:51:1795:-161.82,-15.3525,0	1/1:47:0,47:0:0:47:1602:-144.448,-14.1484,0	1/1:24:0,24:0:0:24:820:-74.0247,-7.22472,0	1/1:32:0,32:0:0:32:1101:-99.3838,-9.63296,0	1/1:17:0,17:0:0:17:574:-51.7877,-5.11751,0	1/1:64:0,64:0:0:64:2243:-202.125,-19.2659,0	1/1:75:0,75:0:0:75:2637:-237.564,-22.5773,0	0/1:31:19,12:19:671:12:424:-29.1645,0,-51.3815	1/1:52:0,52:0:0:52:1795:-161.827,-15.6536,0	0/1:11:6,5:6:208:5:180:-13.2407,0,-15.7478	1/1:11:0,11:0:0:11:392:-35.6045,-3.31133,0	0/1:135:65,70:65:2288:70:2484:-183.171,0,-165.476	0/1:77:39,38:39:1369:38:1343:-97.9764,0,-100.29	1/1:33:0,33:0:0:33:1159:-104.611,-9.93399,0	1/1:103:0,103:0:0:103:3596:-323.848,-31.0061,0	1/1:55:1,54:1:36:54:1911:-168.653,-12.9635,0	0/1:55:25,30:25:868:30:1051:-78.3383,0,-61.8192	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:5:1,4:1:36:4:135:-10.9774,0,-2.09312	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:172:-15.8063,-1.50515,0	1/1:130:0,130:0:0:130:4508:-405.895,-39.1339,0	0/1:30:11,19:11:392:19:684:-52.8594,0,-26.5892	0/1:37:15,22:15:511:22:759:-57.4896,0,-35.1677	.:.:.:.:.:.:.:.	0/1:54:18,36:18:644:36:1270:-98.3457,0,-42.0162	0/1:24:13,11:13:438:11:356:-25.1283,0,-32.5067	0/1:27:15,12:15:531:12:420:-30.0058,0,-39.9941	0/1:44:15,29:15:495:29:1010:-77.9595,0,-31.6026	1/1:41:0,41:0:0:41:1399:-126.191,-12.3422,0	0/1:47:33,14:33:1167:14:500:-31.1878,0,-91.1801	0/1:36:18,18:18:644:18:625:-45.7352,0,-47.4312	0/1:69:35,34:35:1216:34:1199:-87.4437,0,-88.9628	1/1:39:0,38:0:0:38:1341:-120.619,-11.4391,0	1/1:50:0,50:0:0:50:1766:-159.218,-15.0515,0	1/1:11:0,11:0:0:11:396:-35.9818,-3.31133,0	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:36:22,14:22:792:14:492:-33.7753,0,-60.3866	0/1:24:15,9:15:521:9:311:-21.099,0,-39.9026	0/1:10:6,4:6:216:4:136:-9.56524,0,-16.7802	0/1:59:41,18:41:1440:18:631:-39.3411,0,-112.097	0/1:13:8,5:8:280:5:172:-11.9046,0,-21.6259	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:3:2,1:2:72:1:36:-2.28453,0,-5.93363	1/1:33:0,33:0:0:33:1149:-103.503,-9.93399,0	1/1:76:0,76:0:0:76:2635:-237.39,-22.8783,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:154:72,82:72:2544:82:2898:-214.694,0,-182.823	1/1:62:0,62:0:0:62:2154:-194.118,-18.6639,0	1/1:51:0,51:0:0:51:1807:-162.897,-15.3525,0	1/1:26:0,26:0:0:26:902:-81.4744,-7.82678,0	1/1:61:2,59:2:72:59:2060:-178.825,-11.5277,0	0/1:60:45,15:45:1595:15:532:-30.1489,0,-125.723	1/1:26:1,25:1:32:25:883:-76.5743,-4.62747,0	1/1:22:0,22:0:0:22:792:-71.5975,-6.62266,0	1/1:32:0,32:0:0:32:1098:-99.1222,-9.63296,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:30:0,30:0:0:30:1028:-92.7088,-9.0309,0	0/1:60:32,28:32:1135:28:983:-70.7149,0,-84.3945	1/1:77:0,77:0:0:77:2710:-244.045,-23.1793,0	1/1:118:0,118:0:0:118:4172:-375.565,-35.5215,0	1/1:22:0,22:0:0:22:780:-70.4586,-6.62266,0	1/1:85:0,85:0:0:85:2968:-267.346,-25.5876,0	0/1:10:5,5:5:180:5:158:-11.5194,0,-13.5418	1/1:63:0,63:0:0:63:2204:-198.588,-18.9649,0	0/1:34:14,20:14:471:20:704:-53.4409,0,-32.4561	1/1:102:0,102:0:0:102:3590:-323.071,-30.7051,0	1/1:46:0,46:0:0:46:1589:-143.29,-13.8474,0	1/1:52:0,52:0:0:52:1776:-160.109,-15.6536,0	0/1:43:24,19:24:848:19:640:-44.9702,0,-63.695	1/1:106:0,106:0:0:106:3656:-329.231,-31.9092,0	1/1:20:0,20:0:0:20:704:-63.6845,-6.0206,0	0/1:50:32,18:32:1120:18:620:-41.0605,0,-86.0512	1/1:54:0,54:0:0:54:1878:-169.289,-16.2556,0	0/1:25:12,13:12:402:13:446:-32.9407,0,-28.9737	0/1:59:30,29:30:1044:29:1014:-73.8029,0,-76.4816	0/1:59:42,17:42:1468:17:580:-34.7411,0,-114.631	1/1:95:0,95:0:0:95:3283:-295.686,-28.5979,0	1/1:95:0,95:0:0:95:3298:-296.959,-28.5979,0
chr08	2564411	.	C	G	17175.7	PASS	AB=0.498401;ABP=3.04503;AC=37;AF=0.198925;AN=186;AO=785;CIGAR=1X;DP=4644;DPB=4644;DPRA=0.825751;EPP=106.049;EPPR=761.49;GTI=3;LEN=1;MEANALT=1;MQM=59.3019;MQMR=59.6748;NS=93;NUMALT=1;ODDS=0.968032;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27921;QR=137617;RO=3859;RPL=296;RPP=106.049;RPPR=761.49;RPR=489;RUN=1;SAF=0;SAP=1707.62;SAR=785;SRF=0;SRP=8382.72;SRR=3859;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:59:29,30:29:1027:30:1068:-78.6169,0,-74.9781	0/0:117:117,0:117:4162:0:0:0,-35.2205,-374.759	0/1:7:5,2:5:180:2:72:-4.72092,0,-14.4449	0/1:12:9,3:9:324:3:104:-6.09045,0,-25.8935	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.801	0/0:51:50,1:50:1800:1:36:0,-11.7543,-158.672	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.118	0/0:47:47,0:47:1668:0:0:0,-14.1484,-150.398	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.869	0/0:77:77,0:77:2729:0:0:0,-23.1793,-245.839	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.21	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.22	0/0:54:54,0:54:1908:0:0:0,-16.2556,-171.954	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.7258	0/0:34:34,0:34:1197:0:0:0,-10.235,-108.003	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.4151	0/0:69:69,0:69:2454:0:0:0,-20.7711,-221.102	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.641	0/1:33:13,20:13:468:20:712:-54.4703,0,-32.5257	0/0:60:60,0:60:2127:0:0:0,-18.0618,-191.692	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3207	0/1:144:79,65:79:2813:65:2299:-163.682,0,-210.054	0/1:87:47,40:47:1659:40:1421:-101.823,0,-123.394	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.859	0/0:114:114,0:114:4083:0:0:0,-34.3174,-367.65	0/0:67:66,1:66:2364:1:36:0,-16.5758,-209.402	0/1:59:31,28:31:1116:28:983:-70.9647,0,-82.9862	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5354	0/0:142:142,0:142:5054:0:0:0,-42.7463,-455.002	0/1:34:23,11:23:828:11:396:-25.7477,0,-64.6091	0/1:38:23,15:23:813:15:522:-35.8659,0,-62.05	.:.:.:.:.:.:.:.	0/1:60:41,19:41:1464:19:676:-43.0875,0,-113.994	0/1:26:11,15:11:396:15:532:-40.3781,0,-28.156	0/1:30:15,15:15:536:15:536:-39.5439,0,-39.543	0/1:48:33,15:33:1172:15:523:-32.9309,0,-91.3334	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.539	0/1:52:17,35:17:604:35:1234:-95.6888,0,-39.037	0/1:37:19,18:19:680:18:644:-47.1302,0,-50.3747	0/1:69:34,35:34:1220:35:1237:-90.8549,0,-89.3357	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.88	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.91	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0966	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:37:15,22:15:540:22:780:-59.0029,0,-37.7984	0/1:24:9,15:9:315:15:532:-40.9008,0,-21.4625	0/1:10:5,5:5:180:5:172:-12.8077,0,-13.5418	0/1:61:20,41:20:720:41:1464:-113.679,0,-46.7522	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.24248	0/0:37:37,0:37:1306:0:0:0,-11.1381,-117.748	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.824	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:158:86,72:86:3080:72:2577:-184.515,0,-229.86	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.921	0/0:55:55,0:55:1976:0:0:0,-16.5566,-177.473	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.774	0/0:68:66,2:66:2340:2:72:0,-13.6349,-204.01	0/1:63:17,46:17:612:46:1643:-129.136,0,-36.4462	0/0:33:32,1:32:1144:1:36:0,-6.33571,-99.6574	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8359	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.623	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.359	0/1:67:35,32:35:1260:32:1148:-83.459,0,-93.5103	0/0:84:84,0:84:2971:0:0:0,-25.2865,-267.601	0/0:122:122,0:122:4351:0:0:0,-36.7257,-391.663	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4517	0/0:96:96,0:96:3418:0:0:0,-28.8989,-307.806	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4001	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.891	0/1:42:27,15:27:956:15:536:-35.9139,0,-73.7041	0/0:103:103,0:103:3666:0:0:0,-31.0061,-329.856	0/0:53:53,0:53:1861:0:0:0,-15.9546,-167.753	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.455	0/1:48:23,25:23:820:25:891:-66.0584,0,-59.6731	0/0:115:115,0:115:4117:0:0:0,-34.6184,-370.691	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:50:19,31:19:671:31:1108:-84.9773,0,-45.6561	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.527	0/1:26:14,12:14:491:12:428:-31.0297,0,-36.6943	0/1:65:35,30:35:1260:30:1063:-76.199,0,-94.1289	0/1:65:22,43:22:788:43:1548:-120.02,0,-51.6569	0/0:106:106,0:106:3786:0:0:0,-31.9092,-340.925	0/0:103:103,0:103:3658:0:0:0,-31.0061,-329.336
chr08	2580420	.	G	A	15051.8	PASS	AB=0.455029;ABP=39.3373;AC=34;AF=0.182796;AN=186;AO=942;CIGAR=1X;DP=5937;DPB=5937;DPRA=0.910974;EPP=2048.54;EPPR=10847.3;GTI=0;LEN=1;MEANALT=1;MQM=59.982;MQMR=59.9872;NS=93;NUMALT=1;ODDS=1.67401;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33669;QR=178276;RO=4994;RPL=0;RPP=2048.54;RPPR=10847.3;RPR=942;RUN=1;SAF=942;SAP=2048.54;SAR=0;SRF=4994;SRP=10847.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1021:0:0:0,-8.72987,-92.2003	0/0:103:103,0:103:3665:0:0:0,-31.0061,-330.054	0/1:101:51,50:51:1824:50:1756:-127.915,0,-134.037	0/0:153:153,0:153:5500:0:0:0,-46.0576,-495.124	0/1:20:6,14:6:212:14:489:-38.3183,0,-13.4042	0/1:33:22,11:22:769:11:396:-26.0488,0,-59.5946	0/0:106:106,0:106:3758:0:0:0,-31.9092,-338.419	0/0:81:81,0:81:2867:0:0:0,-24.3834,-258.263	0/0:87:87,0:87:3112:0:0:0,-26.1896,-279.99	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.824	0/0:38:37,1:37:1328:1:36:0,-7.84086,-116.224	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:207:207,0:207:7421:0:0:0,-62.3132,-667.932	0/0:101:101,0:101:3617:0:0:0,-30.404,-325.416	0/1:70:19,51:19:684:51:1832:-144.088,0,-40.8182	0/0:45:45,0:45:1586:0:0:0,-13.5463,-143.026	0/1:72:44,28:44:1572:28:1000:-68.6412,0,-120.097	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:145:74,71:74:2641:71:2546:-185.741,0,-194.286	0/1:124:68,56:68:2429:56:2012:-144.025,0,-181.536	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:174:174,0:174:6203:0:0:0,-52.3792,-558.364	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/1:78:51,27:51:1832:27:968:-63.957,0,-141.68	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:144:144,0:144:5107:0:0:0,-43.3483,-459.773	0/1:145:77,68:77:2768:68:2425:-174.855,0,-205.711	0/1:44:24,20:24:860:20:720:-51.8835,0,-64.4765	.:.:.:.:.:.:.:.	0/1:73:44,29:44:1576:29:1044:-72.2996,0,-120.156	0/1:25:20,5:20:720:5:180:-9.02631,0,-57.603	0/1:59:35,24:35:1252:24:849:-58.9671,0,-95.2243	0/1:49:25,24:25:896:24:860:-62.9714,0,-66.2099	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/1:43:24,19:24:836:19:669:-47.5897,0,-62.6104	0/1:82:44,38:44:1569:38:1368:-98.7364,0,-116.815	0/1:108:78,30:78:2766:30:1080:-65.002,0,-216.668	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.512	0/0:106:106,0:106:3781:0:0:0,-31.9092,-340.488	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/1:92:68,24:68:2418:24:845:-48.6723,0,-190.178	0/1:16:10,6:10:345:6:216:-14.974,0,-26.5643	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:79:38,41:38:1338:41:1464:-108.273,0,-96.9346	0/1:39:22,17:22:792:17:608:-43.3119,0,-59.8655	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.698	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:128:65,63:65:2336:63:2245:-163.779,0,-171.967	0/0:132:132,0:132:4706:0:0:0,-39.736,-423.698	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/1:70:25,45:25:892:45:1619:-124.928,0,-59.5276	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7375	0/0:70:70,0:70:2455:0:0:0,-21.0721,-221.201	0/1:40:28,12:28:1008:12:417:-25.8108,0,-78.9952	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.995	0/0:123:123,0:123:4409:0:0:0,-37.0267,-396.98	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:72:72,0:72:2546:0:0:0,-21.6742,-229.388	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:102:49,53:49:1730:53:1885:-139.222,0,-125.276	0/0:176:176,0:176:6259:0:0:0,-52.9813,-563.404	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.646	0/0:60:59,0:59:2116:0:0:0,-17.7608,-190.349	0/1:56:30,26:30:1076:26:936:-67.7018,0,-80.2952	0/0:93:93,0:93:3329:0:0:0,-27.9958,-299.826	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.78	0/1:38:23,15:23:813:15:540:-37.4974,0,-62.05	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:38:15,23:15:540:23:828:-63.405,0,-37.4974	0/1:49:21,28:21:741:28:1008:-76.2859,0,-52.2611	0/0:84:84,0:84:2986:0:0:0,-25.2865,-268.97	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901
chr08	2580474	.	C	T	15019.2	PASS	AB=0.456201;ABP=36.869;AC=34;AF=0.182796;AN=186;AO=931;CIGAR=1X;DP=5800;DPB=5800;DPRA=0.919619;EPP=1981.45;EPPR=10526;GTI=0;LEN=1;MEANALT=1.02778;MQM=59.9785;MQMR=59.992;NS=93;NUMALT=1;ODDS=0.154906;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32931;QR=170760;RO=4866;RPL=921;RPP=1938.73;RPPR=10517.3;RPR=10;RUN=1;SAF=926;SAP=1981.45;SAR=5;SRF=4865;SRP=10560.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:908:0:0:0,-7.82678,-82.0325	0/0:97:97,0:97:3427:0:0:0,-29.1999,-308.644	0/1:94:48,46:48:1682:46:1636:-119.232,0,-123.368	0/0:150:149,0:149:5166:0:0:0,-44.8535,-464.808	0/1:20:5,15:5:180:15:510:-40.2015,0,-10.5315	0/1:34:23,11:23:790:11:396:-25.7477,0,-61.1775	0/0:102:102,0:102:3586:0:0:0,-30.7051,-322.949	0/0:81:81,0:81:2875:0:0:0,-24.3834,-258.988	0/0:84:84,0:84:2944:0:0:0,-25.2865,-265.138	0/0:70:70,0:70:2465:0:0:0,-21.0721,-222.099	0/0:36:33,3:33:1146:3:108:0,-0.76191,-93.369	0/0:47:47,0:47:1611:0:0:0,-14.1484,-145.272	0/0:52:52,0:52:1791:0:0:0,-15.6536,-161.466	0/0:34:34,0:34:1195:0:0:0,-10.235,-107.855	0/0:58:58,0:58:2055:0:0:0,-17.4597,-185.221	0/0:52:52,0:52:1806:0:0:0,-15.6536,-162.818	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/0:45:45,0:45:1541:0:0:0,-13.5463,-138.976	0/0:33:33,0:33:1160:0:0:0,-9.93399,-104.704	0/0:206:206,0:206:7267:0:0:0,-62.0122,-654.086	0/0:98:98,0:98:3463:0:0:0,-29.5009,-311.88	0/1:69:19,50:19:672:50:1786:-140.251,0,-40.0358	0/0:43:43,0:43:1516:0:0:0,-12.9443,-136.733	0/1:69:43,26:43:1532:26:924:-62.7066,0,-117.402	0/0:39:39,0:39:1372:0:0:0,-11.7402,-123.776	0/1:142:73,69:73:2577:69:2455:-178.458,0,-189.433	0/1:122:66,56:66:2348:56:1990:-142.647,0,-174.854	0/0:25:25,0:25:850:0:0:0,-7.52575,-76.8087	0/0:171:171,0:171:5984:0:0:0,-51.4761,-538.676	0/0:81:81,0:81:2828:0:0:0,-24.3834,-254.758	0/1:78:51,27:51:1792:27:950:-62.3331,0,-138.079	0/1:4:2,2:2:72:2:63:-4.77903,0,-5.6326	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:138:138,0:138:4798:0:0:0,-41.5421,-431.986	0/1:141:76,65:76:2631:65:2271:-162.206,0,-194.589	0/1:44:24,20:24:847:20:711:-51.0703,0,-63.3034	.:.:.:.:.:.:.:.	0/1:72:45,26:45:1556:26:904:-59.9394,0,-118.593	0/1:25:20,5:20:708:5:171:-8.1997,0,-56.5198	0/1:54:30,24:30:1076:24:855:-61.0146,0,-80.8972	0/1:49:25,24:25:867:24:843:-61.4375,0,-63.5943	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.393	0/1:43:22,21:22:776:21:742:-54.1586,0,-57.2179	0/1:83:45,38:45:1603:38:1340:-95.9084,0,-119.574	0/1:108:79,29:79:2816:29:1044:-61.7636,0,-221.169	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.573	0/0:86:86,0:86:3038:0:0:0,-25.8886,-273.652	0/0:104:104,0:104:3647:0:0:0,-31.3071,-328.438	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/1:91:68,23:68:2407:23:797:-44.6519,0,-189.493	0/1:16:10,6:10:348:6:216:-14.974,0,-26.8387	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:76:36,40:36:1269:40:1395:-102.963,0,-91.6325	0/1:40:23,17:23:820:17:608:-43.0108,0,-62.0813	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/0:58:58,0:58:2012:0:0:0,-17.4597,-181.346	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:128:65,63:65:2286:63:2193:-159.099,0,-167.467	0/0:129:129,0:129:4561:0:0:0,-38.8329,-410.658	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/0:61:61,0:61:2150:0:0:0,-18.3628,-193.764	0/0:109:109,0:109:3856:0:0:0,-32.8123,-347.238	0/1:70:24,46:24:843:46:1648:-127.536,0,-55.1159	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:63:62,1:62:2180:1:36:0,-15.3666,-192.866	0/0:38:38,0:38:1301:0:0:0,-11.4391,-117.387	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:64:64,0:64:2266:0:0:0,-19.2659,-204.202	0/1:39:27,12:27:960:12:432:-27.4728,0,-74.9761	0/0:124:124,0:124:4303:0:0:0,-37.3277,-387.45	0/0:120:120,0:120:4229:0:0:0,-36.1236,-380.79	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.184	0/0:70:70,0:70:2425:0:0:0,-21.0721,-218.502	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/0:69:69,0:69:2426:0:0:0,-20.7711,-218.596	0/1:97:46,51:46:1623:51:1810:-133.98,0,-117.158	0/0:168:168,0:168:5865:0:0:0,-50.573,-527.968	0/0:51:51,0:51:1808:0:0:0,-15.3525,-163.002	0/0:61:61,0:61:2111:0:0:0,-18.3628,-190.255	0/1:56:29,27:29:1013:27:959:-69.7677,0,-74.6217	0/0:92:91,0:91:3190:0:0:0,-27.3937,-286.968	0/0:43:43,0:43:1514:0:0:0,-12.9443,-136.552	0/1:37:22,15:22:764:15:527:-36.6221,0,-57.9386	0/0:44:44,0:44:1536:0:0:0,-13.2453,-138.529	0/1:20:9,11:9:296:11:396:-29.9621,0,-20.938	0/1:38:14,24:14:485:24:860:-66.2827,0,-32.5378	0/1:48:20,28:20:701:28:995:-75.4146,0,-48.9623	0/0:79:79,0:79:2777:0:0:0,-23.7814,-250.169	0/0:63:63,0:63:2180:0:0:0,-18.9649,-196.463
chr08	2580477	.	C	T	105708	PASS	AB=0.539971;ABP=31.3055;AC=152;AF=0.817204;AN=186;AO=4845;CIGAR=1X;DP=5788;DPB=5788;DPRA=0;EPP=10480.4;EPPR=2001;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.992;MQMR=59.9766;NS=93;NUMALT=1;ODDS=1.63872;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172933;QR=33473;RO=940;RPL=4839;RPP=10471.7;RPPR=1941.29;RPR=6;RUN=1;SAF=4844;SAP=10515.1;SAR=1;SRF=933;SRP=1983.85;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:99:0,99:0:0:99:3532:-318.09,-29.802,0	0/1:99:49,50:49:1756:50:1776:-130.321,0,-128.522	1/1:152:0,152:0:0:152:5435:-489.28,-45.7566,0	0/1:19:14,5:14:500:5:171:-10.0059,0,-39.6166	0/1:34:11,23:11:396:23:824:-64.2483,0,-25.7477	1/1:99:0,99:0:0:99:3528:-317.73,-29.802,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:86:0,86:0:0:86:3080:-277.111,-25.8886,0	1/1:66:0,66:0:0:66:2330:-209.945,-19.868,0	1/1:35:1,34:1:36:34:1220:-106.509,-6.93778,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:34:0,34:0:0:34:1201:-108.394,-10.235,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:51:0,51:0:0:51:1808:-162.999,-15.3525,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:205:0,205:0:0:205:7278:-655.076,-61.7112,0	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	0/1:70:51,19:51:1799:19:680:-40.4571,0,-141.118	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:71:28,43:28:995:43:1544:-117.88,0,-68.4909	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:145:71,74:71:2535:74:2656:-195.636,0,-184.751	0/1:123:56,67:56:1996:67:2400:-179.23,0,-142.887	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:172:0,172:0:0:172:6147:-553.327,-51.7772,0	1/1:75:0,75:0:0:75:2658:-239.466,-22.5773,0	0/1:76:27,49:27:952:49:1751:-134.995,0,-63.1169	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:141:0,141:0:0:141:5024:-452.309,-42.4452,0	0/1:142:67,75:67:2387:75:2670:-197.799,0,-172.341	0/1:43:20,23:20:716:23:820:-61.1782,0,-51.8234	.:.:.:.:.:.:.:.	0/1:71:26,45:26:911:45:1587:-121.746,0,-60.9318	0/1:25:5,20:5:180:20:720:-57.603,0,-9.02631	0/1:58:25,33:25:891:33:1184:-89.4086,0,-63.049	0/1:49:25,24:25:884:24:864:-63.3321,0,-65.1279	1/1:42:0,42:0:0:42:1486:-134.033,-12.6433,0	0/1:45:22,23:22:784:23:804:-59.1302,0,-57.3376	0/1:82:37,45:37:1324:45:1612:-120.686,0,-94.7743	0/1:103:28,75:28:1008:75:2696:-211.878,0,-60.0303	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	1/1:105:0,104:0:0:104:3720:-334.642,-31.3071,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:90:25,65:25:896:65:2332:-183.047,0,-53.8677	0/1:15:6,9:6:216:9:311:-23.8083,0,-15.2751	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:77:39,38:39:1348:38:1356:-99.1612,0,-98.4326	0/1:40:17,23:17:612:23:807:-60.908,0,-43.3722	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:56:2,54:2:72:54:1928:-166.96,-10.021,0	1/1:64:0,64:0:0:64:2266:-204.202,-19.2659,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:129:61,66:61:2160:66:2359:-174.031,0,-156.128	1/1:130:0,130:0:0:130:4642:-417.942,-39.1339,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:110:0,110:0:0:110:3940:-354.792,-33.1133,0	0/1:67:46,21:46:1652:21:739:-46.6634,0,-128.799	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:64:1,63:1:32:63:2252:-199.744,-16.0666,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:68:0,68:0:0:68:2428:-218.776,-20.47,0	0/1:40:12,28:12:428:28:1004:-78.6347,0,-26.8094	1/1:125:0,125:0:0:125:4443:-400.041,-37.6288,0	1/1:125:0,125:0:0:125:4471:-402.559,-37.6288,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	0/1:97:52,45:52:1860:45:1604:-115.45,0,-138.48	1/1:170:0,170:0:0:170:6057:-545.235,-51.1751,0	1/1:52:0,52:0:0:52:1855:-167.229,-15.6536,0	1/1:57:0,57:0:0:57:2011:-181.26,-17.1587,0	0/1:56:27,29:27:964:29:1027:-75.8845,0,-70.2191	1/1:91:0,91:0:0:91:3247:-292.451,-27.3937,0	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	0/1:38:15,23:15:536:23:816:-62.3226,0,-37.1357	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:21:11,10:11:396:10:343:-24.8789,0,-29.6611	0/1:38:24,14:24:855:14:504:-34.259,0,-65.831	0/1:47:27,20:27:968:20:707:-49.8062,0,-73.289	1/1:81:0,81:0:0:81:2899:-261.145,-24.3834,0	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0
chr08	2610250	.	T	A	110866	PASS	AB=0.528554;ABP=19.9992;AC=152;AF=0.808511;AN=188;AO=5479;CIGAR=1X;DP=6616;DPB=6616;DPRA=0;EPP=11900.5;EPPR=2463.29;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9973;MQMR=60;NS=94;NUMALT=1;ODDS=0.658204;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186682;QR=39616;RO=1133;RPL=5479;RPP=11900.5;RPPR=2463.29;RPR=0;RUN=1;SAF=5479;SAP=11900.5;SAR=0;SRF=1133;SRP=2463.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:374:-33.9864,-3.31133,0	1/1:91:0,91:0:0:91:3105:-279.682,-27.3937,0	0/1:78:37,41:37:1306:41:1411:-103.802,0,-94.3596	1/1:149:1,148:1:36:148:5060:-451.967,-41.2552,0	0/1:49:21,28:21:739:28:942:-70.3363,0,-52.0819	0/1:47:23,24:23:803:24:832:-61.0483,0,-58.44	1/1:76:0,76:0:0:76:2633:-237.219,-22.8783,0	1/1:124:0,124:0:0:124:4209:-379.005,-37.3277,0	1/1:73:0,73:0:0:73:2515:-226.604,-21.9752,0	1/1:80:0,80:0:0:80:2730:-245.944,-24.0824,0	1/1:42:0,42:0:0:42:1415:-127.64,-12.6433,0	1/1:65:0,65:0:0:65:2193:-197.632,-19.567,0	1/1:53:0,53:0:0:53:1792:-161.557,-15.9546,0	1/1:54:0,54:0:0:54:1812:-163.355,-16.2556,0	1/1:62:0,61:0:0:61:2115:-190.297,-18.3628,0	1/1:40:0,40:0:0:40:1345:-121.34,-12.0412,0	1/1:62:0,62:0:0:62:2092:-188.551,-18.6639,0	1/1:56:0,56:0:0:56:1890:-170.375,-16.8577,0	1/1:25:1,24:1:36:24:823:-70.7861,-3.92748,0	1/1:80:0,80:0:0:80:2739:-246.757,-24.0824,0	1/1:61:0,61:0:0:61:2010:-181.168,-18.3628,0	0/1:116:68,48:68:2396:48:1649:-113.776,0,-180.977	1/1:57:0,57:0:0:57:1956:-176.313,-17.1587,0	0/1:57:22,35:22:772:35:1211:-92.1335,0,-52.6426	1/1:46:0,46:0:0:46:1590:-143.388,-13.8474,0	0/1:183:78,105:78:2719:105:3551:-264.718,0,-189.863	0/1:142:55,87:55:1928:87:3038:-230.908,0,-131.048	1/1:32:0,32:0:0:32:1085:-97.9527,-9.63296,0	1/1:201:0,201:0:0:201:6889:-620.108,-60.507,0	1/1:111:0,111:0:0:111:3790:-341.308,-33.4143,0	0/1:72:36,36:36:1253:36:1230:-89.3235,0,-91.3959	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	0/1:10:5,5:5:180:5:172:-12.8077,0,-13.5418	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:206:0,206:0:0:206:6971:-627.49,-62.0122,0	0/1:133:64,69:64:2226:69:2370:-173.504,0,-160.565	0/1:41:23,18:23:807:18:620:-43.7807,0,-60.6069	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	0/1:106:57,49:57:1971:49:1674:-119.033,0,-145.751	0/1:26:12,14:12:423:14:486:-36.2412,0,-30.5783	0/1:66:25,41:25:896:41:1387:-105.254,0,-61.0924	0/1:80:48,32:48:1652:32:1097:-74.9512,0,-124.879	1/1:67:0,67:0:0:67:2221:-200.152,-20.169,0	0/1:55:21,34:21:730:34:1136:-85.9794,0,-49.4628	0/1:74:38,36:38:1335:36:1197:-85.7459,0,-98.1729	0/1:109:51,58:51:1773:58:1952:-143.139,0,-127.033	1/1:77:0,77:0:0:77:2659:-239.558,-23.1793,0	1/1:119:0,119:0:0:119:4090:-368.294,-35.8226,0	1/1:62:0,62:0:0:62:2145:-193.318,-18.6639,0	0/1:2:1,1:1:36:1:27:-2.09772,0,-2.99621	0/1:78:40,38:40:1405:38:1315:-95.1682,0,-103.265	0/1:18:7,11:7:248:11:368:-28.0226,0,-17.2457	0/1:12:7,5:7:248:5:167:-11.746,0,-19.0518	0/1:74:29,44:29:987:44:1518:-114.576,0,-66.8006	0/1:27:7,20:7:231:20:691:-54.3825,0,-12.9854	1/1:10:0,10:0:0:10:339:-30.8375,-3.0103,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:37:0,37:0:0:37:1259:-113.606,-11.1381,0	1/1:105:0,103:0:0:103:3451:-310.453,-31.0061,0	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	0/1:194:89,105:89:3154:105:3582:-264.2,0,-225.686	1/1:194:0,194:0:0:194:6612:-595.188,-58.3998,0	1/1:35:0,35:0:0:35:1174:-105.957,-10.5361,0	1/1:39:0,39:0:0:39:1323:-119.364,-11.7402,0	1/1:120:0,120:0:0:120:4115:-370.548,-36.1236,0	0/1:45:30,15:30:1046:15:507:-32.4052,0,-80.902	1/1:11:0,11:0:0:11:357:-32.4442,-3.31133,0	1/1:72:0,72:0:0:72:2469:-222.465,-21.6742,0	1/1:83:0,83:0:0:83:2799:-252.156,-24.9855,0	1/1:14:0,14:0:0:14:484:-43.8885,-4.21442,0	1/1:82:0,82:0:0:82:2809:-253.053,-24.6845,0	0/1:49:22,27:22:759:27:938:-69.9813,0,-53.8772	1/1:110:0,110:0:0:110:3763:-338.878,-33.1133,0	1/1:119:0,119:0:0:119:4061:-365.69,-35.8226,0	1/1:94:0,94:0:0:94:3213:-289.4,-28.2968,0	1/1:64:0,64:0:0:64:2190:-197.365,-19.2659,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:78:0,78:0:0:78:2667:-240.28,-23.4803,0	0/1:84:27,57:27:921:57:1941:-149.675,0,-57.9097	1/1:158:0,158:0:0:158:5418:-487.768,-47.5627,0	1/1:93:0,93:0:0:93:3151:-283.821,-27.9958,0	1/1:48:0,48:0:0:48:1582:-142.662,-14.4494,0	0/1:107:47,60:47:1651:60:1983:-146.53,0,-116.667	1/1:156:0,156:0:0:156:5237:-471.492,-46.9607,0	1/1:32:0,32:0:0:32:1111:-100.296,-9.63296,0	0/1:77:37,40:37:1301:40:1369:-100.325,0,-94.2099	1/1:62:0,62:0:0:62:2119:-190.978,-18.6639,0	0/1:26:13,13:13:442:13:411:-29.4689,0,-32.2775	0/1:64:23,41:23:791:41:1401:-107.117,0,-52.24	0/1:77:55,22:55:1955:22:742:-43.9139,0,-153.046	1/1:80:0,80:0:0:80:2742:-247.025,-24.0824,0	1/1:120:1,119:1:36:119:4096:-365.236,-32.5253,0
chr08	2635380	.	T	A	52344.3	PASS	AB=0.50494;ABP=4.01866;AC=36;AF=0.191489;AN=188;AO=2417;CIGAR=1X;DP=13477;DPB=13477;DPRA=0.961359;EPP=5251.46;EPPR=24002.1;GTI=0;LEN=1;MEANALT=1.02439;MQM=51.5995;MQMR=57.0895;NS=94;NUMALT=1;ODDS=4.23264;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85155;QR=392598;RO=11056;RPL=1409;RPP=147.477;RPPR=144.247;RPR=1008;RUN=1;SAF=1409;SAP=147.477;SAR=1008;SRF=5951;SRP=143.582;SRR=5105;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.743	0/0:164:164,0:164:5849:0:0:0,-49.3689,-525.578	0/1:197:115,82:115:4077:82:2866:-190.67,0,-306.819	0/0:276:276,0:276:9838:0:0:0,-83.0843,-883.504	0/1:88:43,45:43:1535:45:1591:-114.097,0,-111.877	0/1:66:36,30:36:1288:30:1056:-74.3025,0,-96.1164	0/0:180:180,0:180:6404:0:0:0,-54.1854,-575.314	0/0:207:207,0:207:7280:0:0:0,-62.3132,-652.368	0/0:180:180,0:180:6404:0:0:0,-54.1854,-573.792	0/0:149:148,1:148:5252:1:36:0,-41.2552,-468.683	0/0:127:127,0:127:4466:0:0:0,-38.2308,-400.396	0/0:227:227,0:227:7991:0:0:0,-68.3338,-716.579	0/0:179:179,0:179:6342:0:0:0,-53.8844,-569.24	0/0:148:148,0:148:5191:0:0:0,-44.5524,-466.164	0/0:191:191,0:191:6838:0:0:0,-57.4967,-614.803	0/0:156:156,0:156:5544:0:0:0,-46.9607,-497.764	0/0:111:111,0:111:3946:0:0:0,-33.4143,-354.73	0/0:89:88,0:88:3135:0:0:0,-26.4906,-280.918	0/0:120:120,0:120:4213:0:0:0,-36.1236,-378.317	0/0:208:208,0:208:7419:0:0:0,-62.6142,-666.462	0/0:240:240,0:240:8531:0:0:0,-72.2472,-766.457	0/1:79:27,52:27:968:52:1849:-140.367,0,-63.594	0/0:93:93,0:93:3332:0:0:0,-27.9958,-298.906	0/1:124:68,56:68:2398:56:1934:-135.803,0,-178.685	0/0:105:105,0:105:3728:0:0:0,-31.6081,-335.093	0/1:266:132,133:132:4681:133:4641:-334.809,0,-340.817	0/1:363:183,180:183:6541:180:6346:-448.946,0,-478.1	0/0:94:94,0:94:3346:0:0:0,-28.2968,-301.134	0/0:294:293,1:293:10394:1:36:0,-84.9045,-930.973	0/0:147:142,5:142:5038:5:180:0,-29.0663,-437.396	0/1:175:103,72:103:3668:72:2545:-173.854,0,-276.908	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1173	0/1:15:3,12:3:108:12:407:-31.8786,0,-5.53439	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.9133	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.8302	0/0:373:373,0:373:13200:0:0:0,-112.284,-1186.58	0/1:132:82,50:82:2870:50:1739:-114.242,0,-218.702	0/1:106:52,54:52:1851:54:1906:-134.088,0,-134.432	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7624	0/1:163:74,89:74:2639:89:3183:-230.693,0,-188.232	0/1:80:39,41:39:1392:41:1431:-100.572,0,-101.278	0/1:188:104,84:104:3715:84:2966:-206.08,0,-277.622	0/1:145:72,73:72:2521:73:2586:-185.984,0,-183.342	0/0:150:150,0:150:5314:0:0:0,-45.1545,-478.125	0/1:122:49,73:49:1744:73:2599:-195.493,0,-120.38	0/1:156:83,73:83:2957:73:2551:-178.555,0,-218.926	0/1:258:106,152:106:3776:152:5366:-399.028,0,-261.884	0/0:140:140,0:140:4987:0:0:0,-42.1442,-447.998	0/0:177:177,0:177:6310:0:0:0,-53.2823,-567.403	0/0:177:177,0:177:6270:0:0:0,-53.2823,-563.999	0/1:13:6,7:6:208:7:248:-18.3572,0,-15.1457	0/1:140:63,77:63:2248:77:2710:-194.489,0,-159.192	0/1:64:34,30:34:1208:30:1061:-75.422,0,-89.6652	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:194:92,102:92:3264:102:3601:-259.402,0,-234.797	0/1:97:54,43:54:1919:43:1527:-107.814,0,-143.735	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5301	0/1:4:2,2:2:72:2:72:-5.11605,0,-5.6326	0/0:123:123,0:123:4372:0:0:0,-37.0267,-392.644	0/0:178:176,0:176:6190:0:0:0,-52.9813,-556.185	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3041	0/1:215:111,104:111:3944:104:3716:-266.743,0,-290.006	0/0:233:231,2:231:8193:2:72:0,-63.3033,-729.802	0/0:110:110,0:110:3907:0:0:0,-33.1133,-350.895	0/0:124:124,0:124:4432:0:0:0,-37.3277,-398.927	0/0:211:211,0:211:7544:0:0:0,-63.5173,-677.359	0/1:168:42,126:42:1487:126:4416:-340.634,0,-83.38	0/0:91:91,0:91:3227:0:0:0,-27.3937,-289.775	0/0:117:117,0:117:4175:0:0:0,-35.2205,-375.025	0/0:147:147,0:147:5172:0:0:0,-44.2514,-465.254	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.439	0/0:97:97,0:97:3472:0:0:0,-29.1999,-311.519	0/1:150:90,60:90:3171:60:2098:-136.906,0,-240.178	0/0:207:207,0:207:7404:0:0:0,-62.3132,-664.746	0/0:212:212,0:212:7584:0:0:0,-63.8184,-682.015	0/0:147:147,0:147:5272:0:0:0,-44.2514,-473.6	0/0:168:162,6:162:5723:6:208:0,-31.9002,-494.393	0/1:23:10,13:10:352:13:459:-34.718,0,-25.0945	0/0:160:160,0:160:5738:0:0:0,-48.1648,-515.019	0/1:181:78,103:78:2779:103:3626:-262.186,0,-195.288	0/0:287:287,0:287:10200:0:0:0,-86.3956,-917.191	0/0:160:160,0:160:5619:0:0:0,-48.1648,-505.608	0/0:170:170,0:170:6011:0:0:0,-51.1751,-540.339	0/1:190:109,81:109:3886:81:2848:-196.267,0,-292.4	0/0:302:302,0:302:10610:0:0:0,-90.9111,-953.532	0/0:57:57,0:57:2023:0:0:0,-17.1587,-181.908	0/1:147:89,58:89:3153:58:2045:-136.097,0,-239.423	0/0:139:139,0:139:4976:0:0:0,-41.8432,-446.2	0/1:88:49,39:49:1739:39:1362:-91.8925,0,-129.549	0/1:173:83,90:83:2923:90:3149:-224.238,0,-210.945	0/1:175:69,106:69:2442:106:3767:-281.804,0,-167.275	0/0:123:123,0:123:4391:0:0:0,-37.0267,-395.083	0/0:325:325,0:325:11571:0:0:0,-97.8347,-1040.44
chr08	2636678	.	A	C	182824	PASS	AB=0.475296;ABP=25.8629;AC=152;AF=0.808511;AN=188;AO=8524;CIGAR=1X;DP=10818;DPB=10818;DPRA=29.0699;EPP=18512.6;EPPR=4973.51;GTI=3;LEN=1;MEANALT=1.05376;MQM=59.9865;MQMR=59.9843;NS=94;NUMALT=1;ODDS=1.02012;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=304262;QR=81965;RO=2289;RPL=8524;RPP=18512.6;RPPR=4973.51;RPR=0;RUN=1;SAF=0;SAP=18512.6;SAR=8524;SRF=0;SRP=4973.51;SRR=2289;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1677:-151.215,-14.1484,0	1/1:153:0,153:0:0:153:5485:-493.775,-46.0576,0	0/1:162:83,79:83:2973:79:2804:-203.83,0,-219.034	1/1:148:0,148:0:0:148:5297:-476.863,-44.5524,0	0/1:83:25,57:25:896:57:2021:-157.117,0,-55.9161	0/1:84:23,61:23:824:61:2188:-171.899,0,-49.1968	1/1:124:0,124:0:0:124:4413:-397.343,-37.3277,0	1/1:284:0,284:0:0:284:10117:-910.465,-85.4925,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:182:0,182:0:0:182:6490:-584.184,-54.7875,0	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	1/1:79:0,79:0:0:79:2811:-253.104,-23.7814,0	1/1:86:0,86:0:0:86:3078:-277.248,-25.8886,0	1/1:121:0,120:0:0:120:4299:-386.726,-36.1236,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	1/1:137:0,137:0:0:137:4918:-442.769,-41.2411,0	1/1:93:0,93:0:0:93:3339:-300.726,-27.9958,0	1/1:50:0,50:0:0:50:1787:-161.112,-15.0515,0	1/1:188:0,187:0:0:187:6664:-599.476,-56.2926,0	1/1:137:0,137:0:0:137:4904:-441.512,-41.2411,0	0/1:183:124,59:124:4456:59:2100:-134.173,0,-346.12	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:171:78,93:78:2800:93:3317:-247.271,0,-200.763	1/1:116:0,116:0:0:116:4104:-369.543,-34.9195,0	0/1:357:158,199:158:5645:199:7088:-530.51,0,-400.433	0/1:262:161,101:161:5760:101:3620:-247.135,0,-439.646	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:274:0,274:0:0:274:9820:-883.739,-82.4822,0	1/1:202:11,191:11:396:191:6822:-578.066,-24.8253,0	0/1:122:67,55:67:2400:55:1952:-139.23,0,-179.531	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:192:0,192:0:0:192:6868:-618.187,-57.7978,0	0/1:289:137,152:137:4897:152:5391:-398.324,0,-353.883	0/1:61:29,32:29:1032:32:1152:-85.6273,0,-74.8306	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:157:86,71:86:3061:71:2529:-180.598,0,-228.457	0/1:38:23,15:23:828:15:540:-37.4974,0,-63.405	0/1:221:128,93:128:4592:93:3320:-232.491,0,-346.916	0/1:74:39,35:39:1404:35:1256:-91.0691,0,-104.383	1/1:78:0,78:0:0:78:2758:-248.46,-23.4803,0	0/1:114:69,45:69:2460:45:1612:-111.053,0,-187.337	0/1:154:93,61:93:3340:61:2174:-149.567,0,-254.458	0/1:259:131,128:131:4688:128:4533:-330.171,0,-344.114	1/1:156:0,156:0:0:156:5570:-501.394,-46.9607,0	1/1:147:0,147:0:0:147:5215:-469.488,-44.2514,0	1/1:209:0,209:0:0:209:7384:-664.605,-62.9153,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:195:106,89:106:3792:89:3196:-229.162,0,-282.778	0/1:52:26,25:26:936:25:896:-65.2481,0,-68.8471	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:130:65,65:65:2328:65:2332:-171.006,0,-170.646	0/1:41:17,24:17:608:24:852:-64.6582,0,-42.7098	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	1/1:124:2,122:2:72:122:4376:-387.176,-30.491,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:299:170,129:170:6081:129:4621:-326.04,0,-457.377	1/1:284:1,282:1:36:282:10085:-903.985,-81.953,0	1/1:119:0,119:0:0:119:4237:-381.51,-35.8226,0	1/1:92:0,92:0:0:92:3288:-296.14,-27.6948,0	1/1:124:2,122:2:72:122:4348:-384.659,-30.491,0	0/1:107:60,47:60:2148:47:1647:-116.302,0,-161.377	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:106:0,106:0:0:106:3800:-342.197,-31.9092,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:147:0,147:0:0:147:5180:-466.337,-44.2514,0	0/1:108:55,53:55:1976:53:1891:-137.957,0,-145.603	1/1:105:1,104:1:36:104:3716:-331.044,-28.0099,0	1/1:219:0,219:0:0:219:7850:-706.524,-65.9256,0	1/1:209:0,209:0:0:209:7496:-674.68,-62.9153,0	1/1:191:6,185:6:216:185:6621:-576.177,-37.7062,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:106:1,105:1:36:105:3737:-332.932,-28.3109,0	0/1:158:89,69:89:3180:69:2453:-173.461,0,-238.862	1/1:231:1,230:1:36:230:8165:-731.266,-65.9397,0	1/1:105:0,105:0:0:105:3772:-339.678,-31.6082,0	1/1:84:0,84:0:0:84:2995:-269.782,-25.2865,0	0/1:99:52,47:52:1860:47:1684:-122.045,0,-137.878	1/1:153:0,153:0:0:153:5448:-490.452,-46.0576,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:77:35,42:35:1256:42:1504:-112.475,0,-90.166	1/1:71:0,71:0:0:71:2527:-227.68,-21.3731,0	0/1:47:29,18:29:1044:18:629:-42.7854,0,-80.1264	0/1:88:38,50:38:1360:50:1779:-133.902,0,-96.21	0/1:71:39,32:39:1396:32:1132:-80.8155,0,-104.566	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	1/1:125:0,125:0:0:125:4492:-404.447,-37.6288,0
chr08	2658035	.	TT	CC,CT	130106	PASS	AB=0.493317,0.504595;ABP=3.93912,3.44931;AC=152,36;AF=0.808511,0.191489;AN=188;AO=5010,1216;CIGAR=2X,1X1M;DP=6240;DPB=6241;DPRA=0,1.01496;EPP=10873.4,2634.84;EPPR=0;GTI=0;LEN=2,1;MEANALT=1.58511,2.11905;MQM=52.3369,58.5757;MQMR=0;NS=94;NUMALT=2;ODDS=4.7184;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=173622,42816;QR=0;RO=0;RPL=5009,1215;RPP=10873.4,2634.84;RPPR=0;RPR=1,1;RUN=1,1;SAF=5010,1216;SAP=10882.1,2643.52;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22,0:0:0:22,0:735,0:-66.3129,-6.62266,0,-66.3129,-6.62266,-66.3129	1/1:117:0,117,0:0:0:117,0:4101,0:-367.402,-35.2205,0,-367.402,-35.2205,-367.402	1/2:80:0,30,50:0:0:30,50:1055,1748:-228.15,-142.508,-133.477,-85.9918,0,-70.9403	1/1:130:0,128,1:0:0:128,1:4472,36:-401.419,-38.5318,0,-398.481,-35.5943,-398.18	1/2:33:0,21,12:0:0:21,12:743,422:-94.0534,-34.4216,-28.0999,-59.9808,0,-56.3685	1/2:34:0,11,23:0:0:11,23:384,816:-97.2232,-66.5716,-63.2602,-30.9981,0,-24.0744	1/1:79:0,78,0:0:0:78,0:2766,0:-247.91,-23.4803,0,-247.91,-23.4803,-247.91	1/1:86:0,86,0:0:0:86,0:2992,0:-268.402,-25.8886,0,-268.402,-25.8886,-268.402	1/1:35:0,34,1:0:0:34,1:1184,36:-106.168,-10.235,0,-103.23,-6.93778,-102.929	1/1:79:0,79,0:0:0:79,0:2669,0:-239.782,-23.7814,0,-239.782,-23.7814,-239.782	1/1:48:0,48,0:0:0:48,0:1676,0:-149.78,-14.4494,0,-149.78,-14.4494,-149.78	1/1:63:0,63,0:0:0:63,0:2117,0:-190.215,-18.9649,0,-190.215,-18.9649,-190.215	1/1:76:0,76,0:0:0:76,0:2625,0:-234.306,-22.8783,0,-234.306,-22.8783,-234.306	1/1:56:0,56,0:0:0:56,0:1912,0:-170.955,-16.8577,0,-170.955,-16.8577,-170.955	1/1:55:0,55,0:0:0:55,0:1942,0:-174.711,-16.5567,0,-174.711,-16.5567,-174.711	1/1:54:0,54,0:0:0:54,0:1833,0:-163.265,-16.2556,0,-163.265,-16.2556,-163.265	1/1:63:0,63,0:0:0:63,0:2122,0:-189.958,-18.9649,0,-189.958,-18.9649,-189.958	1/1:60:0,59,0:0:0:59,0:2055,0:-183.768,-17.7608,0,-183.768,-17.7608,-183.768	1/1:80:0,80,0:0:0:80,0:2752,0:-246.021,-24.0824,0,-246.021,-24.0824,-246.021	1/1:103:0,103,0:0:0:103,0:3535,0:-317.442,-31.0061,0,-317.442,-31.0061,-317.442	1/1:77:0,77,0:0:0:77,0:2682,0:-238.723,-23.1793,0,-238.723,-23.1793,-238.723	1/2:63:0,27,36:0:0:27,36:928,1276:-178.928,-103.783,-95.6556,-75.4911,0,-64.654	1/1:43:0,43,0:0:0:43,0:1492,0:-134.433,-12.9443,0,-134.433,-12.9443,-134.433	1/2:53:0,35,18:0:0:35,18:1229,631:-150.876,-51.6971,-41.1611,-99.5282,0,-94.1097	1/1:45:0,45,0:0:0:45,0:1548,0:-137.533,-13.5464,0,-137.533,-13.5464,-137.533	1/2:173:0,96,76:0:0:96,76:3322,2667:-486.159,-216.655,-187.756,-269.512,0,-246.634	1/2:122:0,55,67:0:0:55,67:1876,2313:-338.49,-188.258,-171.701,-150.573,0,-130.404	1/1:26:0,25,0:0:0:25,0:870,0:-77.7487,-7.52575,0,-77.7487,-7.52575,-77.7487	1/1:134:0,133,0:0:0:133,0:4649,0:-417.651,-40.037,0,-417.651,-40.037,-417.651	1/1:73:0,71,0:0:0:71,0:2488,0:-220.987,-21.3731,0,-220.987,-21.3731,-220.987	1/2:80:0,56,24:0:0:56,24:1934,860:-227.115,-70.4404,-53.5827,-157.028,0,-149.804	1/2:7:0,3,4:0:0:3,4:108,135:-20.014,-11.2784,-10.3753,-9.08398,0,-7.87986	1/1:37:0,37,0:0:0:37,0:1279,0:-114.488,-11.1381,0,-114.488,-11.1381,-114.488	1/2:3:0,1,2:0:0:1,2:36,72:-9.16364,-6.23466,-5.93363,-3.2882,0,-2.68614	1/1:4:0,4,0:0:0:4,0:132,0:-12.1795,-1.20412,0,-12.1795,-1.20412,-12.1795	1/1:3:0,3,0:0:0:3,0:108,0:-10.0498,-0.90309,0,-10.0498,-0.90309,-10.0498	1/1:173:0,173,0:0:0:173,0:6026,0:-541.723,-52.0782,0,-541.723,-52.0782,-541.723	1/2:113:0,58,55:0:0:58,55:2028,1959:-322.807,-159.969,-142.509,-163.131,0,-146.574	1/2:87:0,33,53:0:0:33,53:1141,1860:-243.098,-151.359,-141.425,-91.7254,0,-75.7708	1/1:4:0,4,0:0:0:4,0:137,0:-12.5815,-1.20412,0,-12.5815,-1.20412,-12.5815	1/2:121:0,66,55:0:0:66,55:2307,1912:-340.997,-155.755,-135.887,-185.589,0,-169.032	1/2:56:0,28,28:0:0:28,28:972,987:-158.057,-80.6968,-72.268,-77.7069,0,-69.278	1/2:46:0,25,19:0:0:25,19:842,680:-122.047,-55.5102,-47.9844,-66.5819,0,-60.8623	1/2:68:0,35,33:0:0:35,33:1203,1188:-194.802,-97.2759,-86.7399,-97.8781,0,-87.9441	1/1:45:0,45,0:0:0:45,0:1551,0:-139.612,-13.5464,0,-139.612,-13.5464,-139.612	1/2:69:0,30,39:0:0:30,39:1038,1400:-198.529,-114.518,-105.487,-84.3621,0,-72.622	1/2:70:0,36,34:0:0:36,34:1277,1193:-200.532,-97.2444,-86.4073,-103.639,0,-93.4036	1/2:99:0,56,43:0:0:56,43:1899,1518:-277.576,-123.907,-107.049,-154.015,0,-141.071	1/1:99:0,99,0:0:0:99,0:3458,0:-310.951,-29.802,0,-310.951,-29.802,-310.951	1/1:67:0,65,2:0:0:65,2:2303,72:-206.639,-19.567,0,-200.765,-13.3331,-200.163	1/1:88:0,87,0:0:0:87,0:2989,0:-268.803,-26.1896,0,-268.803,-26.1896,-268.803	1/2:8:0,4,4:0:0:4,4:144,144:-23.8217,-12.1078,-10.9037,-12.0732,0,-10.8691	1/2:174:0,96,78:0:0:96,78:3379,2766:-498.999,-225.544,-196.645,-273.808,0,-250.327	1/2:22:0,9,13:0:0:9,13:308,468:-63.4651,-38.4794,-35.7701,-25.3347,0,-21.4213	1/2:19:0,11,8:0:0:11,8:385,288:-55.0829,-23.8592,-20.5478,-31.579,0,-29.1707	1/2:79:0,40,39:0:0:40,39:1387,1391:-225.509,-113.732,-101.691,-112.127,0,-100.387	1/2:21:0,10,11:0:0:10,11:347,392:-60.4424,-32.2597,-29.2494,-28.5337,0,-25.2224	1/1:9:0,9,0:0:0:9,0:318,0:-28.9537,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chr08	2773115	.	TGAGT	CGAGT	67340.8	PASS	AB=0.469935;ABP=15.0229;AC=150;AF=0.797872;AN=188;AO=3233;CIGAR=1X4M;DP=4081;DPB=4082.6;DPRA=44.8132;EPP=7023.38;EPPR=1779.27;GTI=2;LEN=1;MEANALT=1.26374;MQM=59.9889;MQMR=60;NS=94;NUMALT=1;ODDS=1.48524;PAIRED=0;PAIREDR=0;PAO=4;PQA=135.5;PQR=0;PRO=0;QA=113207;QR=28626;RO=818;RPL=3233;RPP=7023.38;RPPR=1779.27;RPR=0;RUN=1;SAF=3233;SAP=7023.38;SAR=0;SRF=818;SRP=1779.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,29:0:0:29:999:-89.9638,-8.72987,0	1/1:38:0,38:0:0:38:1308:-118.013,-11.4391,0	0/1:85:46,38:46:1629:38:1352:-96.3341,0,-121.251	1/1:70:1,69:1:36:69:2418:-214.217,-17.4738,0	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4759	0/1:21:15,6:15:514:6:207:-12.6453,0,-40.2623	1/1:38:0,38:0:0:38:1329:-119.908,-11.4391,0	1/1:55:0,53:0:0:53:1857:-167.149,-15.9546,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:50:0,46:0:0:46:1631:-146.732,-13.8474,0	1/1:60:0,60:0:0:60:2047:-184.493,-18.0618,0	1/1:60:0,60:0:0:60:2101:-189.299,-18.0618,0	1/1:67:0,67:0:0:67:2291:-206.448,-20.169,0	1/1:67:0,67:0:0:67:2324:-209.416,-20.169,0	1/1:50:0,50:0:0:50:1757:-158.412,-15.0515,0	1/1:51:0,51:0:0:51:1781:-160.57,-15.3525,0	1/1:35:0,35:0:0:35:1231:-111.093,-10.5361,0	1/1:24:0,24:0:0:24:815:-73.6601,-7.22472,0	1/1:22:0,22:0:0:22:752:-67.9941,-6.62266,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:38:0,38:0:0:38:1295:-116.842,-11.4391,0	0/1:26:21,5:21:731:5:176:-8.35824,0,-58.284	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:25:14,11:14:492:11:392:-28.0943,0,-37.0866	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	0/1:104:42,61:42:1476:61:2152:-162.581,0,-101.768	0/1:90:48,42:48:1713:42:1485:-106.85,0,-127.363	1/1:21:0,20:0:0:20:716:-64.408,-6.0206,0	1/1:59:0,59:0:0:59:2085:-187.919,-17.7608,0	1/1:67:3,64:3:105:64:2261:-193.954,-10.373,0	0/1:34:11,21:11:395:21:743:-57.2011,0,-25.8995	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:115:0,112:0:0:112:3937:-354.168,-33.7154,0	0/1:37:17,20:17:589:20:695:-51.7333,0,-42.1968	0/1:53:29,24:29:997:24:830:-59.0603,0,-74.0831	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:43:17,26:17:583:26:889:-67.3759,0,-39.8476	0/1:33:13,18:13:462:18:628:-47.1548,0,-32.2255	0/1:48:17,31:17:595:31:1101:-84.9498,0,-39.4273	0/1:38:17,20:17:593:20:708:-52.5669,0,-42.2175	1/1:39:0,39:0:0:39:1366:-123.237,-11.7402,0	0/1:46:26,20:26:909:20:685:-48.1201,0,-68.2776	0/1:45:26,19:26:932:19:663:-46.4471,0,-70.6529	0/1:52:33,19:33:1150:19:643:-42.4743,0,-88.0911	1/1:46:0,46:0:0:46:1595:-143.776,-13.8474,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:50:0,50:0:0:50:1760:-158.682,-15.0515,0	0/1:4:2,1:2:72:1:36:-2.33536,0,-5.5738	0/1:58:28,30:28:997:30:1052:-77.528,0,-72.5856	0/1:21:11,10:11:375:10:360:-26.4227,0,-27.7562	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:65:33,32:33:1149:32:1125:-81.9891,0,-84.1471	0/1:6:4,2:4:143:2:72:-5.03054,0,-11.4153	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	1/1:85:0,85:0:0:85:2920:-262.977,-25.5876,0	1/1:6:0,6:0:0:6:203:-18.6012,-1.80618,0	0/1:76:41,35:41:1448:35:1224:-87.5826,0,-107.737	1/1:56:0,55:0:0:55:1930:-173.711,-16.5567,0	1/1:52:0,52:0:0:52:1843:-166.15,-15.6536,0	1/1:31:1,29:1:30:29:1032:-90.2014,-6.3213,0	1/1:46:1,45:1:36:45:1604:-141.052,-10.2491,0	0/1:67:42,25:42:1482:25:900:-61.152,0,-113.504	1/1:49:2,45:2:72:45:1576:-135.3,-7.6616,0	1/1:26:0,26:0:0:26:913:-82.484,-7.82678,0	1/1:42:0,42:0:0:42:1472:-132.772,-12.6433,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:71:1,69:1:31:69:2434:-216.236,-18.2326,0	0/1:66:31,35:31:1101:35:1234:-91.4947,0,-79.5329	1/1:57:0,57:0:0:57:2013:-181.433,-17.1587,0	1/1:54:0,54:0:0:54:1917:-172.806,-16.2556,0	1/1:37:2,35:2:72:35:1218:-103.083,-4.30139,0	1/1:46:1,45:1:36:45:1580:-138.831,-10.2491,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:33:0,33:0:0:33:1167:-105.336,-9.93399,0	0/1:37:22,15:22:760:15:512:-35.2636,0,-57.5789	1/1:48:0,48:0:0:48:1673:-150.852,-14.4494,0	1/1:51:0,51:0:0:51:1772:-159.76,-15.3525,0	1/1:68:0,68:0:0:68:2378:-214.276,-20.47,0	0/1:28:18,10:18:628:10:339:-22.4087,0,-48.4171	1/1:94:0,93:0:0:93:3206:-288.413,-27.9958,0	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	0/1:65:33,30:33:1139:30:988:-69.8928,0,-83.4906	1/1:55:0,55:0:0:55:1884:-169.834,-16.5567,0	0/1:52:29,23:29:991:23:781:-54.9464,0,-73.8423	0/1:128:68,60:68:2372:60:2110:-151.637,0,-175.207	0/1:63:41,22:41:1404:22:772:-50.8364,0,-107.687	1/1:16:0,14:0:0:14:500:-44.9767,-4.21442,0	1/1:63:2,60:2:67:60:2120:-184.696,-12.6525,0
chr08	2774950	.	T	C	20314.7	PASS	AB=0.476048;ABP=14.6608;AC=34;AF=0.180851;AN=188;AO=1130;CIGAR=1X;DP=5997;DPB=5997;DPRA=1.29512;EPP=1932.36;EPPR=9105.61;GTI=1;LEN=1;MEANALT=1.07143;MQM=59.9735;MQMR=59.9996;NS=94;NUMALT=1;ODDS=1.44607;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40167;QR=173643;RO=4863;RPL=1066;RPP=1932.36;RPPR=9105.61;RPR=64;RUN=1;SAF=1130;SAP=2456.77;SAR=0;SRF=4863;SRP=10562.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:34,1:34:1220:1:36:0,-6.93777,-106.509	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:120:77,43:77:2755:43:1536:-102.409,0,-212.068	0/0:105:105,0:105:3704:0:0:0,-31.6081,-333.559	0/1:30:21,9:21:752:9:316:-19.748,0,-58.9754	0/1:41:16,25:16:576:25:900:-68.9788,0,-39.8328	0/0:93:93,0:93:3316:0:0:0,-27.9958,-298.657	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.735	0/0:90:90,0:90:3179:0:0:0,-27.0927,-286.334	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:36:36,0:36:1269:0:0:0,-10.8371,-114.511	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.346	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:54:54,0:54:1918:0:0:0,-16.2556,-172.896	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.059	0/0:145:145,0:145:5169:0:0:0,-43.6493,-465.351	0/1:58:10,48:10:356:48:1696:-135.464,0,-14.9215	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/1:59:35,24:35:1252:24:855:-59.5094,0,-95.2243	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:135:77,58:77:2764:58:2027:-142.06,0,-208.362	0/1:205:104,100:104:3721:100:3581:-260.874,0,-273.468	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:194:194,0:194:6918:0:0:0,-58.3998,-622.686	0/0:101:100,1:100:3561:1:36:0,-26.8058,-317.099	0/1:48:26,22:26:936:22:788:-56.7954,0,-70.11	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:137:136,1:136:4848:1:36:0,-37.6428,-432.875	0/1:85:42,43:42:1496:43:1529:-112.314,0,-109.347	0/1:34:14,20:14:491:20:707:-53.7196,0,-34.2861	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:219:127,92:127:4539:92:3263:-227.964,0,-342.751	0/1:25:12,13:12:428:13:464:-34.5718,0,-31.3331	0/1:95:61,33:61:2169:33:1176:-77.4912,0,-166.818	0/1:38:19,19:19:680:19:680:-50.09,0,-50.09	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:91:49,41:49:1752:41:1435:-102.146,0,-130.667	0/1:57:38,19:38:1364:19:684:-44.7316,0,-105.902	0/1:56:32,24:32:1148:24:860:-60.8642,0,-86.7722	0/0:77:76,1:76:2720:1:36:0,-19.581,-241.445	0/0:42:41,1:41:1472:1:36:0,-9.04498,-129.178	0/0:125:124,0:124:4427:0:0:0,-37.3277,-398.242	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:163:84,79:84:3020:79:2808:-203.89,0,-222.962	0/1:47:28,19:28:1008:19:684:-47.7419,0,-76.8879	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/1:76:40,36:40:1440:36:1296:-94.0657,0,-107.019	0/1:24:17,7:17:608:7:239:-14.618,0,-47.8273	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/0:77:77,0:77:2741:0:0:0,-23.1793,-246.931	0/0:72:72,0:72:2570:0:0:0,-21.6742,-231.549	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:121:57,64:57:2043:64:2277:-168.766,0,-147.716	0/0:98:97,1:97:3467:1:36:0,-25.9027,-308.643	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/0:91:89,2:89:3175:2:57:0,-21.9804,-280.561	0/1:102:27,75:27:968:75:2676:-210.378,0,-56.7323	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/0:70:70,0:70:2477:0:0:0,-21.0721,-223.183	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:109:109,0:109:3898:0:0:0,-32.8123,-351.013	0/1:71:39,32:39:1400:32:1139:-81.4453,0,-104.926	0/0:93:92,1:92:3269:1:36:0,-24.3975,-290.832	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:47:46,1:46:1656:1:36:0,-10.5501,-145.73	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:74:39,35:39:1389:35:1252:-90.7089,0,-103.031	0/0:144:144,0:144:5119:0:0:0,-43.3483,-460.851	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:38:13,25:13:468:25:879:-67.9877,0,-31.0205	0/0:78:78,0:78:2780:0:0:0,-23.4803,-250.439	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:49:29,20:29:1040:20:699:-48.482,0,-79.1639	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.4	0/1:25:16,9:16:568:9:320:-21.6166,0,-43.9261	0/1:83:45,38:45:1593:38:1355:-97.2642,0,-118.673	0/1:55:19,36:19:680:36:1273:-98.2078,0,-44.9725	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.538	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.655
chr08	2774998	.	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chr08	2781118	.	G	A	54126	PASS	AB=0.493461;ABP=4.8277;AC=36;AF=0.191489;AN=188;AO=2424;CIGAR=1X;DP=13778;DPB=13778;DPRA=1.08523;EPP=5266.66;EPPR=24640.5;GTI=2;LEN=1;MEANALT=1.05;MQM=59.2929;MQMR=59.9777;NS=94;NUMALT=1;ODDS=1.96616;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85686;QR=399218;RO=11350;RPL=1079;RPP=66.3951;RPPR=91.4763;RPR=1345;RUN=1;SAF=1079;SAP=66.3951;SAR=1345;SRF=5334;SRP=91.9974;SRR=6016;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:91:91,0:91:3180:0:0:0,-27.3937,-286.422	0/0:195:195,0:195:6915:0:0:0,-58.7008,-622.42	0/1:199:112,87:112:3932:87:3079:-217.405,0,-294.165	0/0:301:300,1:300:10630:1:36:0,-87.0117,-953.014	0/1:153:88,65:88:3089:65:2266:-158.069,0,-231.988	0/1:107:52,55:52:1845:55:1930:-141.402,0,-134.118	0/0:144:144,0:144:5113:0:0:0,-43.3483,-460.313	0/0:290:290,0:290:10317:0:0:0,-87.2987,-928.444	0/0:138:138,0:138:4865:0:0:0,-41.5421,-438.002	0/0:232:232,0:232:8241:0:0:0,-69.839,-741.703	0/0:73:73,0:73:2593:0:0:0,-21.9752,-233.618	0/0:215:215,0:215:7460:0:0:0,-64.7214,-671.459	0/0:194:194,0:194:6816:0:0:0,-58.3998,-613.521	0/0:97:97,0:97:3323:0:0:0,-29.1999,-299.284	0/0:175:175,0:175:6094:0:0:0,-52.6802,-548.572	0/0:124:124,0:124:4342:0:0:0,-37.3277,-390.956	0/0:108:108,0:108:3717:0:0:0,-32.5112,-334.736	0/0:125:125,0:125:4367:0:0:0,-37.6287,-393.207	0/0:78:78,0:78:2732:0:0:0,-23.4803,-246.121	0/0:215:215,0:215:7657:0:0:0,-64.7214,-689.169	0/0:217:217,0:217:7682:0:0:0,-65.3235,-691.42	0/1:93:27,66:27:945:66:2330:-181.931,0,-57.3664	0/0:109:109,0:109:3868:0:0:0,-32.8123,-348.316	0/1:66:27,39:27:948:39:1393:-105.731,0,-65.7639	0/0:153:153,0:153:5365:0:0:0,-46.0576,-482.972	0/1:400:219,181:219:7723:181:6395:-454.97,0,-574.696	0/1:409:226,183:226:8019:183:6502:-461.926,0,-598.608	0/0:94:94,0:94:3282:0:0:0,-28.2968,-295.6	0/0:352:350,1:350:12426:1:36:0,-102.403,-1114.6	0/0:100:99,1:99:3462:1:36:0,-26.5047,-308.192	0/1:146:86,60:86:3003:60:2125:-147.536,0,-226.548	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:420:420,0:420:14575:0:0:0,-126.433,-1311.53	0/1:176:100,76:100:3498:76:2675:-187.895,0,-262.004	0/1:82:31,50:31:1097:50:1747:-132.724,0,-74.2949	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:186:95,91:95:3351:91:3185:-230.182,0,-245.816	0/1:54:22,32:22:764:32:1131:-84.9822,0,-52.8211	0/1:266:129,137:129:4538:137:4853:-356.63,0,-328.515	0/1:160:84,76:84:2958:76:2677:-192.92,0,-218.288	0/0:119:119,0:119:4099:0:0:0,-35.8226,-369.101	0/1:105:45,60:45:1612:60:2133:-160.519,0,-113.762	0/1:210:104,106:104:3672:106:3756:-274.653,0,-267.421	0/1:229:119,110:119:4212:110:3907:-281.81,0,-310.326	0/0:121:121,0:121:4282:0:0:0,-36.4246,-385.556	0/0:202:202,0:202:7082:0:0:0,-60.8081,-637.448	0/0:127:127,0:127:4439:0:0:0,-38.2308,-399.682	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:170:86,84:86:3036:84:2972:-216.405,0,-222.103	0/1:49:26,23:26:884:23:801:-57.6562,0,-65.1157	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:195:105,90:105:3701:90:3205:-229.936,0,-274.592	0/1:67:30,37:30:1068:37:1319:-98.8376,0,-76.2631	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/0:118:117,0:117:4115:0:0:0,-35.2205,-370.312	0/0:182:182,0:182:6363:0:0:0,-54.7875,-572.769	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:291:147,144:147:5169:144:5093:-370.74,0,-377.752	0/0:250:249,0:249:8804:0:0:0,-74.9565,-792.143	0/0:103:103,0:103:3609:0:0:0,-31.0061,-325.013	0/0:104:104,0:104:3651:0:0:0,-31.3071,-328.789	0/0:201:200,1:200:7053:1:32:0,-57.3077,-631.634	0/1:197:77,120:77:2751:120:4281:-325.544,0,-188.529	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/0:121:121,0:121:4274:0:0:0,-36.4246,-384.838	0/0:144:144,0:144:4984:0:0:0,-43.3483,-448.72	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/0:94:94,0:94:3308:0:0:0,-28.2968,-297.664	0/1:104:45,59:45:1567:59:2084:-156.509,0,-110.01	0/0:228:228,0:228:8054:0:0:0,-68.6348,-724.886	0/0:224:224,0:224:7930:0:0:0,-67.4307,-713.73	0/0:205:205,0:205:7225:0:0:0,-61.7111,-650.31	0/0:226:226,0:226:8006:0:0:0,-68.0328,-720.564	0/1:4:2,2:2:53:2:72:-5.6326,0,-3.83018	0/0:206:206,0:206:7227:0:0:0,-62.0122,-650.481	0/1:168:77,91:77:2716:91:3199:-237.469,0,-194.11	0/0:291:287,4:287:10117:4:144:0,-74.2861,-897.16	0/0:159:159,0:159:5578:0:0:0,-47.8638,-502.148	0/0:152:152,0:152:5355:0:0:0,-45.7566,-482.087	0/1:158:90,68:90:3099:68:2402:-168.703,0,-231.573	0/0:299:299,0:299:10472:0:0:0,-90.008,-941.922	0/0:59:59,0:59:2061:0:0:0,-17.7608,-185.76	0/1:133:71,62:71:2428:62:2176:-155.834,0,-178.734	0/0:129:129,0:129:4525:0:0:0,-38.8329,-407.42	0/1:49:29,20:29:1023:20:716:-49.9886,0,-77.6313	0/1:111:63,48:63:2221:48:1720:-121.635,0,-166.739	0/1:138:52,86:52:1796:86:2990:-227.686,0,-120.375	0/0:232:232,0:232:8202:0:0:0,-69.839,-738.196	0/0:255:255,0:255:8984:0:0:0,-76.7626,-808.553
chr08	2828960	.	AGAAG	AGAAA,TGAAA	149700	PASS	AB=0.506256,0.461573;ABP=3.77099,31.7149;AC=151,35;AF=0.803191,0.18617;AN=188;AO=5335,1041;CIGAR=4M1X,1X3M1X;DP=6641;DPB=6645.8;DPRA=36.0707,0.957163;EPP=11587.8,2263.51;EPPR=7.35324;GTI=4;LEN=1,5;MEANALT=2.61957,3.17949;MQM=59.1248,53.902;MQMR=52.5;NS=94;NUMALT=2;ODDS=0.594951;PAIRED=0,0;PAIREDR=0;PAO=5,7;PQA=168,231;PQR=0;PRO=0;QA=187272,36057;QR=53;RO=2;RPL=4871,1038;RPP=7908.09,2237.53;RPPR=3.0103;RPR=464,3;RUN=1,1;SAF=4871,1038;SAP=7908.09,2237.53;SAR=464,3;SRF=1;SRP=3.0103;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:1,43,0:1:31:43,0:1520,0:-133.986,-10.4523,0,-134.287,-12.9443,-136.775	1/1:87:0,79,0:0:0:79,0:2759,0:-248.012,-23.7814,0,-248.012,-23.7814,-248.012	1/2:129:0,86,38:0:0:86,38:3045,1320:-354.897,-106.927,-81.0389,-248.029,0,-236.59	1/1:106:0,103,0:0:0:103,0:3559,0:-320.274,-31.0061,0,-320.274,-31.0061,-320.274	1/2:33:0,23,8:0:0:23,8:794,288:-88.0187,-23.5359,-16.6122,-64.5512,0,-62.1429	1/2:13:0,6,6:0:0:6,6:216,215:-34.9556,-17.3246,-15.5185,-17.676,0,-15.8698	1/1:75:0,74,0:0:0:74,0:2562,0:-230.291,-22.2762,0,-230.291,-22.2762,-230.291	1/1:123:0,119,0:0:0:119,0:4219,0:-378.819,-35.8226,0,-378.819,-35.8226,-378.819	1/1:74:0,72,0:0:0:72,0:2531,0:-227.745,-21.6742,0,-227.745,-21.6742,-227.745	1/1:84:0,82,0:0:0:82,0:2928,0:-263.464,-24.6845,0,-263.464,-24.6845,-263.464	1/1:87:0,86,0:0:0:86,0:3072,0:-276.382,-25.8886,0,-276.382,-25.8886,-276.382	1/1:105:0,99,0:0:0:99,0:3522,0:-316.665,-29.802,0,-316.665,-29.802,-316.665	1/1:69:0,67,0:0:0:67,0:2366,0:-212.942,-20.169,0,-212.942,-20.169,-212.942	1/1:105:0,103,0:0:0:103,0:3692,0:-331.825,-31.0061,0,-331.825,-31.0061,-331.825	1/1:61:0,60,0:0:0:60,0:2101,0:-189.1,-18.0618,0,-189.1,-18.0618,-189.1	1/1:72:0,67,0:0:0:67,0:2378,0:-214.008,-20.169,0,-214.008,-20.169,-214.008	1/1:53:0,47,0:0:0:47,0:1641,0:-147.585,-14.1484,0,-147.585,-14.1484,-147.585	1/1:41:0,38,0:0:0:38,0:1326,0:-119.358,-11.4391,0,-119.358,-11.4391,-119.358	1/1:40:0,40,0:0:0:40,0:1431,0:-129.062,-12.0412,0,-129.062,-12.0412,-129.062	1/1:97:0,97,0:0:0:97,0:3371,0:-303.46,-29.1999,0,-303.46,-29.1999,-303.46	1/1:95:0,88,0:0:0:88,0:3109,0:-279.759,-26.4906,0,-279.759,-26.4906,-279.759	1/2:48:0,20,27:0:0:20,27:686,929:-131.079,-75.3864,-69.3658,-55.7526,0,-47.6248	1/1:60:0,58,0:0:0:58,0:2034,0:-182.847,-17.4597,0,-182.847,-17.4597,-182.847	1/2:53:0,34,14:0:0:34,14:1174,478:-133.908,-38.7265,-28.4915,-95.2206,0,-91.0062	1/1:113:0,107,0:0:0:107,0:3771,0:-339.24,-32.2102,0,-339.24,-32.2102,-339.24	1/2:166:0,96,62:0:0:96,62:3313,2166:-445.256,-176.25,-147.351,-269.113,0,-250.45	1/2:200:0,96,100:0:0:96,100:3361,3484:-555.006,-282.579,-253.68,-272.513,0,-242.41	1/1:26:0,24,0:0:0:24,0:832,0:-73.6212,-7.22472,0,-73.6212,-7.22472,-73.6212	1/1:168:0,154,0:0:0:154,0:5407,0:-486.1,-46.3586,0,-486.1,-46.3586,-486.1	1/1:98:0,91,0:0:0:91,0:3150,0:-283.418,-27.3937,0,-283.418,-27.3937,-283.418	1/2:59:0,31,28:0:0:31,28:1056,989:-166.137,-80.4795,-71.1475,-85.904,0,-77.4752	0/0:1:0,0,0:0:0:0,0:0,0:0,0,0,0,0,0	1/1:4:0,4,0:0:0:4,0:140,0:-12.9402,-1.20412,0,-12.9402,-1.20412,-12.9402	2/2:3:0,0,3:0:0:0,3:0,103:-9.59002,-9.59002,-9.59002,-0.90309,-0.90309,0	1/1:5:0,5,0:0:0:5,0:171,0:-15.7255,-1.50515,0,-15.7255,-1.50515,-15.7255	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:165:1,145,0:1:22:145,0:5029,0:-450.451,-41.9738,0,-450.752,-43.6494,-452.428	1/2:62:0,37,22:0:0:37,22:1313,755:-167.984,-61.2085,-50.0704,-106.86,0,-100.237	1/2:49:0,29,19:0:0:29,19:1036,667:-137.321,-52.8616,-44.1318,-84.501,0,-78.7814	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:66:0,34,27:0:0:34,27:1159,949:-171.045,-77.2148,-66.9798,-93.9106,0,-85.7828	1/2:30:0,16,13:0:0:16,13:559,453:-82.3616,-36.8851,-32.0687,-45.5673,0,-41.6539	1/2:73:0,35,36:0:0:35,36:1199,1200:-194.382,-97.0599,-86.5239,-97.384,0,-86.547	1/2:34:0,17,16:0:0:17,16:604,553:-94.1808,-44.9544,-39.8369,-49.3612,0,-44.5447	1/1:57:0,56,0:0:0:56,0:1991,0:-179.117,-16.8577,0,-179.117,-16.8577,-179.117	1/2:93:0,49,42:0:0:49,42:1678,1442:-252.795,-116.761,-102.011,-136.078,0,-123.434	1/2:81:0,45,35:0:0:45,35:1581,1214:-226.632,-98.1766,-84.6303,-128.54,0,-118.003	1/2:94:0,54,39:0:0:54,39:1906,1316:-261.564,-106.54,-90.2848,-155.092,0,-143.352	1/1:46:0,45,0:0:0:45,0:1570,0:-141.279,-13.5464,0,-141.279,-13.5464,-141.279	1/1:94:0,92,0:0:0:92,0:3169,0:-284.774,-27.6948,0,-284.774,-27.6948,-284.774	1/1:97:0,95,0:0:0:95,0:3308,0:-297.676,-28.5979,0,-297.676,-28.5979,-297.676	1/2:6:0,3,3:0:0:3,3:108,100:-17.2445,-8.41882,-7.51573,-9.17208,0,-8.26899	1/2:73:0,36,35:0:0:36,35:1277,1216:-202.529,-98.4843,-87.6472,-104.088,0,-93.5524	1/2:62:0,22,38:0:0:22,38:784,1316:-170.867,-106.96,-100.337,-63.996,0,-52.5569	1/2:7:0,4,3:0:0:4,3:131,107:-19.0339,-8.89884,-7.69472,-10.4703,0,-9.56722	1/2:92:0,40,48:0:0:40,48:1409,1668:-250.005,-135.298,-123.257,-114.811,0,-100.362	1/2:25:0,10,15:0:0:10,15:330,525:-69.6968,-43.0317,-40.0214,-27.0029,0,-22.4875	1/1:4:0,3,0:0:0:3,0:92,0:-8.28218,-0.90309,0,-8.2821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chr08	2839029	.	G	A	59750.5	PASS	AB=0.467013;ABP=28.511;AC=151;AF=0.803191;AN=188;AO=5603;CIGAR=1X;DP=7056;DPB=7056;DPRA=0;EPP=12022.6;EPPR=3018.55;GTI=0;LEN=1;MEANALT=1.01064;MQM=23.7887;MQMR=33.8051;NS=94;NUMALT=1;ODDS=3.55377;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200808;QR=51796;RO=1452;RPL=5586;RPP=12022.6;RPPR=3018.55;RPR=17;RUN=1;SAF=0;SAP=12169.8;SAR=5603;SRF=0;SRP=3155.99;SRR=1452;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:936:-49.0347,-7.82678,0	1/1:173:0,173:0:0:173:6207:-324.962,-52.0782,0	0/1:111:53,58:53:1892:58:2080:-76.5517,0,-110.489	1/1:148:0,148:0:0:148:5316:-325.081,-44.5524,0	0/1:60:29,31:29:1040:31:1112:-45.5456,0,-64.332	0/1:38:27,11:27:972:11:396:-9.42671,0,-61.9658	1/1:98:0,98:0:0:98:3516:-216.188,-29.5009,0	1/1:114:1,113:1:36:113:4056:-209.307,-31.2629,0	1/1:52:0,52:0:0:52:1872:-97.8608,-15.6536,0	1/1:68:0,68:0:0:68:2414:-151.467,-20.47,0	1/1:83:0,83:0:0:83:2972:-182.686,-24.9855,0	1/1:46:1,45:1:36:45:1612:-81.6256,-10.7928,0	1/1:55:0,55:0:0:55:1967:-103.402,-16.5567,0	1/1:78:0,78:0:0:78:2788:-157.989,-23.4803,0	1/1:48:0,48:0:0:48:1708:-107.286,-14.4494,0	1/1:59:0,59:0:0:59:2124:-120.022,-17.7608,0	1/1:61:0,61:0:0:61:2196:-114.762,-18.3628,0	1/1:58:0,58:0:0:58:2084:-109.111,-17.4597,0	1/1:56:0,56:0:0:56:2000:-105.302,-16.8577,0	1/1:159:0,159:0:0:159:5700:-350.416,-47.8638,0	1/1:88:0,88:0:0:88:3160:-179.62,-26.4906,0	0/1:57:39,18:39:1375:18:644:-25.7876,0,-98.3645	1/1:22:0,22:0:0:22:792:-49.0914,-6.62266,0	0/1:56:24,32:24:864:32:1152:-48.8279,0,-49.6683	1/1:40:0,40:0:0:40:1440:-82.9137,-12.0412,0	0/1:183:83,100:83:2964:100:3581:-179.833,0,-192.178	0/1:200:104,96:104:3723:96:3436:-135.75,0,-230.248	1/1:31:0,31:0:0:31:1108:-63.5802,-9.33193,0	1/1:188:0,188:0:0:188:6739:-446.81,-56.5936,0	1/1:88:4,84:4:144:84:3005:-159.991,-14.6964,0	0/1:88:36,51:36:1292:51:1832:-86.5054,0,-76.5358	0/1:14:9,5:9:320:5:180:-6.26836,0,-20.2407	1/1:10:0,10:0:0:10:360:-20.5627,-3.0103,0	0/1:12:6,6:6:216:6:212:-7.84596,0,-13.1876	1/1:8:0,8:0:0:8:288:-15.2321,-2.40824,0	1/1:17:0,17:0:0:17:608:-32.1157,-5.11751,0	1/1:120:0,120:0:0:120:4300:-284.76,-36.1236,0	0/1:88:43,45:43:1527:45:1620:-66.0313,0,-94.627	0/1:82:42,40:42:1483:40:1432:-50.606,0,-85.022	0/1:2:1,1:1:36:1:36:-1.67681,0,-2.58556	0/1:113:53,60:53:1881:60:2160:-88.5767,0,-114.815	0/1:65:31,34:31:1116:34:1208:-49.7741,0,-68.0805	0/1:73:46,27:46:1644:27:972:-33.1078,0,-106.74	0/1:63:39,24:39:1404:24:851:-34.0737,0,-93.9911	1/1:45:0,45:0:0:45:1616:-99.345,-13.5464,0	0/1:57:33,24:33:1162:24:864:-40.1516,0,-79.488	0/1:91:57,34:57:2039:34:1224:-36.6644,0,-127.423	0/1:133:72,61:72:2555:61:2170:-94.6878,0,-167.643	1/1:76:0,76:0:0:76:2712:-167.344,-22.8783,0	1/1:170:0,170:0:0:170:6091:-376.894,-51.1751,0	1/1:73:1,72:1:36:72:2576:-166.831,-18.5876,0	0/1:10:7,3:7:248:3:108:-3.89704,0,-17.8799	0/1:126:69,57:69:2472:57:2048:-69.3031,0,-146.703	0/1:42:22,20:22:784:20:720:-34.7974,0,-54.1505	0/1:21:11,10:11:396:10:360:-12.6663,0,-23.2426	0/1:112:56,56:56:1988:56:2008:-80.7928,0,-121.592	0/1:13:6,7:6:203:7:248:-11.833,0,-13.2328	1/1:19:0,19:0:0:19:684:-45.0625,-5.71957,0	0/1:15:5,10:5:171:10:360:-18.3869,0,-9.95839	1/1:61:0,61:0:0:61:2187:-124.706,-18.3628,0	1/1:118:2,116:2:72:116:4156:-248.678,-29.2534,0	1/1:12:0,12:0:0:12:428:-26.8478,-3.61236,0	0/1:85:46,39:46:1648:39:1400:-66.4893,0,-110.903	1/1:167:0,167:0:0:167:5976:-370.842,-50.272,0	1/1:54:1,53:1:36:53:1908:-104.875,-13.068,0	1/1:87:0,87:0:0:87:3123:-191.967,-26.1896,0	1/1:115:4,111:4:144:111:3988:-233.467,-23.0969,0	0/1:99:63,36:63:2228:36:1287:-49.8715,0,-152.809	1/1:49:0,49:0:0:49:1760:-100.178,-14.7505,0	1/1:59:0,59:0:0:59:2115:-111.667,-17.7608,0	1/1:61:0,61:0:0:61:2180:-144.758,-18.3628,0	1/1:37:0,37:0:0:37:1332:-81.0194,-11.1381,0	1/1:55:0,55:0:0:55:1976:-103.477,-16.5567,0	0/1:73:41,32:41:1455:32:1152:-38.3271,0,-87.3784	1/1:142:0,142:0:0:142:5079:-289.634,-42.7463,0	1/1:114:0,114:0:0:114:4080:-249.343,-34.3174,0	1/1:108:0,108:0:0:108:3848:-202.622,-32.5112,0	1/1:100:1,99:1:36:99:3543:-183.813,-27.0485,0	0/1:28:15,13:15:536:13:464:-17.0537,0,-32.1677	1/1:114:0,114:0:0:114:4074:-234.853,-34.3174,0	0/1:95:52,43:52:1856:43:1544:-53.2174,0,-107.681	1/1:126:0,126:0:0:126:4532:-278.936,-37.9298,0	1/1:59:0,59:0:0:59:2116:-129.353,-17.7608,0	1/1:61:0,61:0:0:61:2184:-135.052,-18.3628,0	0/1:68:30,38:30:1076:38:1364:-63.3292,0,-66.6025	1/1:81:0,81:0:0:81:2904:-181.358,-24.3834,0	1/1:19:0,19:0:0:19:680:-35.8716,-5.71957,0	0/1:47:26,21:26:927:21:756:-26.8598,0,-56.0043	1/1:52:0,52:0:0:52:1868:-97.8432,-15.6536,0	0/1:85:47,38:47:1692:38:1368:-52.404,0,-105.589	0/1:119:66,53:66:2355:53:1900:-72.8795,0,-148.327	0/1:74:48,26:48:1716:26:932:-36.0631,0,-117.457	1/1:52:0,52:0:0:52:1848:-127.145,-15.6536,0	1/1:78:0,78:0:0:78:2795:-171.939,-23.4803,0
chr08	2934237	.	A	C	131224	PASS	AB=0.51308;ABP=7.55491;AC=152;AF=0.808511;AN=188;AO=6097;CIGAR=1X;DP=7602;DPB=7602;DPRA=0;EPP=13181.7;EPPR=3242.9;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9523;MQMR=59.9894;NS=94;NUMALT=1;ODDS=0.30412;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=217508;QR=53845;RO=1504;RPL=6090;RPP=13181.7;RPPR=3242.9;RPR=7;RUN=1;SAF=0;SAP=13242.5;SAR=6097;SRF=0;SRP=3268.9;SRR=1504;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:63:0,63:0:0:63:2219:-199.97,-18.9649,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	0/1:178:95,83:95:3408:83:2984:-215.208,0,-253.351	1/1:225:0,225:0:0:225:8009:-720.798,-67.7318,0	0/1:63:22,41:22:792:41:1438:-110.747,0,-52.6408	0/1:42:20,21:20:720:21:741:-54.4529,0,-52.5694	1/1:87:0,87:0:0:87:3064:-275.985,-26.1896,0	1/1:86:0,86:0:0:86:3037:-273.551,-25.8886,0	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:36:0,36:0:0:36:1281:-115.591,-10.8371,0	1/1:89:0,89:0:0:89:3174:-285.865,-26.7917,0	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	1/1:45:1,44:1:21:44:1584:-140.752,-11.4464,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:41:0,41:0:0:41:1457:-131.424,-12.3422,0	1/1:32:0,32:0:0:32:1148:-103.615,-9.63296,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:145:0,145:0:0:145:5187:-466.966,-43.6494,0	1/1:108:0,108:0:0:108:3833:-345.165,-32.5112,0	0/1:204:101,103:101:3590:103:3685:-270.433,0,-261.895	1/1:144:1,143:1:36:143:5097:-455.116,-39.75,0	0/1:62:24,38:24:856:38:1364:-104.397,0,-58.6972	1/1:102:0,102:0:0:102:3652:-328.884,-30.7051,0	0/1:228:105,123:105:3772:123:4370:-324.837,0,-271.043	0/1:249:136,113:136:4880:113:4045:-289.28,0,-364.393	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	1/1:221:0,221:0:0:221:7891:-710.209,-66.5276,0	1/1:143:2,141:2:72:141:4989:-442.318,-36.2106,0	0/1:95:37,58:37:1332:58:2080:-158.866,0,-91.5561	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:26:1,25:1:21:25:900:-79.2211,-5.72683,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:165:0,165:0:0:165:5888:-530.024,-49.67,0	0/1:168:87,81:87:3120:81:2865:-207.512,0,-230.453	0/1:26:8,18:8:288:18:648:-50.8251,0,-18.4406	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:136:63,73:63:2260:73:2594:-192.765,0,-162.723	0/1:28:20,8:20:720:8:284:-17.4745,0,-56.6999	0/1:135:58,77:58:2060:77:2768:-208.722,0,-145.032	0/1:34:15,19:15:540:19:684:-51.6553,0,-38.7015	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:127:64,63:64:2285:63:2245:-164.07,0,-167.679	0/1:70:45,25:45:1611:25:900:-60.2489,0,-124.207	0/1:147:73,74:73:2603:74:2634:-193.052,0,-190.267	1/1:103:0,103:0:0:103:3692:-332.482,-31.0061,0	1/1:78:0,78:0:0:78:2781:-250.527,-23.4803,0	1/1:104:0,104:0:0:104:3714:-334.458,-31.3071,0	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:101:42,59:42:1483:59:2116:-160.305,0,-103.36	0/1:61:35,26:35:1248:26:936:-66.1966,0,-94.262	0/1:11:4,7:4:144:7:237:-18.3477,0,-10.0023	0/1:134:43,91:43:1548:91:3219:-249.592,0,-99.275	0/1:48:12,36:12:432:36:1292:-102.134,0,-24.7718	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	1/1:84:0,84:0:0:84:2996:-269.871,-25.2865,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:120:51,69:51:1832:69:2457:-185.248,0,-129.037	1/1:135:0,135:0:0:135:4807:-432.778,-40.6391,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:68:0,68:0:0:68:2429:-218.856,-20.47,0	1/1:120:1,119:1:36:119:4203:-374.842,-32.5253,0	0/1:132:87,45:87:3119:45:1620:-106.354,0,-241.2	1/1:36:0,36:0:0:36:1295:-116.854,-10.8371,0	1/1:78:1,77:1:36:77:2721:-241.525,-19.8821,0	1/1:46:0,46:0:0:46:1652:-148.96,-13.8474,0	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	1/1:179:0,179:0:0:179:6380:-574.285,-53.8844,0	0/1:66:38,28:38:1360:28:999:-70.3565,0,-102.833	1/1:85:1,84:1:36:84:3001:-266.714,-21.9893,0	1/1:130:1,129:1:36:129:4617:-412.093,-35.5356,0	1/1:168:2,166:2:72:166:5862:-520.808,-43.7363,0	1/1:62:2,60:2:72:60:2141:-186.119,-11.8271,0	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:85:48,37:48:1728:37:1324:-93.8745,0,-130.218	1/1:166:0,166:0:0:166:5922:-532.93,-49.971,0	1/1:66:0,66:0:0:66:2336:-210.496,-19.868,0	1/1:59:0,59:0:0:59:2109:-190.077,-17.7608,0	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	1/1:122:1,121:1:36:121:4344:-387.536,-33.1274,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:64:26,38:26:932:38:1368:-104.155,0,-64.9329	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/1:71:38,33:38:1368:33:1188:-85.8555,0,-102.048	0/1:59:42,17:42:1504:17:608:-37.2913,0,-117.894	1/1:77:2,75:2:72:75:2669:-233.618,-16.3426,0	1/1:89:0,89:0:0:89:3179:-286.332,-26.7917,0
chr08	2935165	.	C	T	102135	PASS	AB=0.481938;ABP=9.44245;AC=150;AF=0.797872;AN=188;AO=4743;CIGAR=1X;DP=5940;DPB=5940;DPRA=12.7634;EPP=10302.3;EPPR=2600.09;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.962;MQMR=60;NS=94;NUMALT=1;ODDS=2.33689;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169461;QR=42468;RO=1196;RPL=0;RPP=10302.3;RPPR=2600.09;RPR=4743;RUN=1;SAF=0;SAP=10302.3;SAR=4743;SRF=0;SRP=2600.09;SRR=1196;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:152:73,79:73:2547:79:2836:-209.721,0,-183.722	1/1:89:0,89:0:0:89:3163:-284.893,-26.7917,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:78:0,78:0:0:78:2773:-249.58,-23.4803,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:69:0,69:0:0:69:2472:-222.733,-20.7711,0	1/1:75:0,75:0:0:75:2659:-239.555,-22.5773,0	1/1:83:0,83:0:0:83:2961:-266.72,-24.9855,0	1/1:71:0,71:0:0:71:2519:-226.962,-21.3731,0	1/1:94:1,93:1:36:93:3299:-293.533,-24.6985,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:56:0,55:0:0:55:1967:-176.945,-16.5567,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:46:0,46:0:0:46:1641:-147.978,-13.8474,0	1/1:135:0,135:0:0:135:4836:-435.393,-40.6391,0	1/1:100:0,100:0:0:100:3581:-322.496,-30.103,0	0/1:40:33,7:33:1172:7:248:-10.623,0,-93.7463	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	0/1:27:13,14:13:464:14:496:-36.8459,0,-33.9697	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:150:70,80:70:2493:80:2857:-212.213,0,-179.467	0/1:155:66,89:66:2364:89:3188:-240.484,0,-166.359	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:149:1,148:1:36:148:5289:-472.547,-41.2552,0	1/1:100:6,94:6:208:94:3376:-284.996,-11.0439,0	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	0/1:11:1,10:1:36:10:355:-28.979,0,-0.286945	1/1:25:0,25:0:0:25:882:-79.6971,-7.52575,0	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:22:0,22:0:0:22:784:-70.8833,-6.62266,0	1/1:189:0,189:0:0:189:6763:-608.742,-56.8947,0	0/1:65:26,39:26:907:39:1400:-106.732,0,-62.3774	0/1:63:34,29:34:1200:29:1036:-74.589,0,-89.3407	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:62:34,28:34:1212:28:993:-71.0195,0,-90.7225	0/1:22:13,9:13:464:9:320:-22.5197,0,-35.4748	0/1:77:48,29:48:1711:29:1040:-70.7351,0,-131.096	0/1:55:32,23:32:1110:23:824:-57.9267,0,-83.6462	1/1:58:0,58:0:0:58:2064:-186.03,-17.4597,0	0/1:39:15,24:15:531:24:845:-64.6278,0,-36.3817	0/1:47:28,19:28:999:19:662:-45.7441,0,-76.0761	0/1:121:46,75:46:1612:75:2684:-205.38,0,-108.942	1/1:51:2,49:2:72:49:1756:-151.487,-8.51581,0	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	1/1:96:0,96:0:0:96:3429:-308.822,-28.8989,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:90:49,41:49:1745:41:1466:-105.143,0,-130.24	0/1:46:15,31:15:531:31:1108:-86.1836,0,-34.2745	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:107:54,53:54:1927:53:1908:-139.787,0,-141.496	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	1/1:6:0,6:0:0:6:212:-19.4215,-1.80618,0	0/1:11:8,3:8:284:3:104:-6.39148,0,-22.592	1/1:47:0,47:0:0:47:1677:-151.216,-14.1484,0	1/1:106:1,105:1:36:105:3764:-335.361,-28.3109,0	1/1:13:0,13:0:0:13:460:-41.7348,-3.91339,0	0/1:121:61,60:61:2196:60:2156:-157.882,0,-161.48	1/1:104:0,104:0:0:104:3716:-334.642,-31.3071,0	1/1:70:0,70:0:0:70:2496:-224.892,-21.0721,0	1/1:55:0,55:0:0:55:1971:-177.664,-16.5567,0	1/1:68:0,68:0:0:68:2428:-218.775,-20.47,0	0/1:162:110,52:110:3944:52:1868:-119.632,0,-306.384	1/1:50:0,50:0:0:50:1773:-159.721,-15.0515,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:51:0,51:0:0:51:1827:-164.698,-15.3525,0	1/1:19:0,19:0:0:19:670:-60.626,-5.71957,0	1/1:76:0,76:0:0:76:2711:-244.234,-22.8783,0	0/1:82:31,51:31:1107:51:1819:-139.306,0,-75.2557	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:116:0,116:0:0:116:4164:-374.94,-34.9195,0	1/1:38:0,38:0:0:38:1338:-120.716,-11.4391,0	1/1:84:1,83:1:36:83:2967:-263.664,-21.6882,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:50:1,49:1:36:49:1747:-153.915,-11.4532,0	0/1:47:28,19:28:999:19:684:-47.7419,0,-76.0761	1/1:105:0,105:0:0:105:3764:-338.958,-31.6082,0	1/1:49:0,49:0:0:49:1734:-156.343,-14.7505,0	1/1:68:1,67:1:36:67:2408:-213.378,-16.8718,0	0/1:50:32,18:32:1144:18:648:-43.6004,0,-88.218	1/1:135:0,135:0:0:135:4807:-432.786,-40.6391,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:68:33,35:33:1167:35:1252:-92.515,0,-84.8664	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	0/1:49:29,20:29:1011:20:698:-48.391,0,-76.5499	0/1:183:108,75:108:3813:75:2680:-186.357,0,-288.279	0/1:53:37,16:37:1311:16:568:-35.4973,0,-102.336	1/1:95:1,94:1:36:94:3365:-299.455,-24.9996,0	1/1:62:0,62:0:0:62:2206:-198.804,-18.6639,0
chr08	3062388	.	A	G	192938	PASS	AB=0.518745;ABP=17.0122;AC=151;AF=0.803191;AN=188;AO=9167;CIGAR=1X;DP=11401;DPB=11401;DPRA=122.581;EPP=19908.9;EPPR=4845.39;GTI=1;LEN=1;MEANALT=1.04301;MQM=51.78;MQMR=59.4892;NS=94;NUMALT=1;ODDS=3.34477;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=324388;QR=79871;RO=2230;RPL=0;RPP=19908.9;RPPR=4845.39;RPR=9167;RUN=1;SAF=0;SAP=19908.9;SAR=9167;SRF=0;SRP=4845.39;SRR=2230;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:101:0,101:0:0:101:3572:-320.779,-30.404,0	1/1:84:0,84:0:0:84:2974:-265.952,-25.2865,0	0/1:210:111,99:111:3988:99:3520:-251.907,0,-295.561	1/1:265:2,263:2:72:263:9311:-827.787,-72.9362,0	0/1:144:53,91:53:1908:91:3229:-246.475,0,-128.604	0/1:54:27,27:27:972:27:958:-69.8594,0,-71.5064	1/1:87:0,87:0:0:87:3095:-277.73,-26.1896,0	1/1:221:0,221:0:0:221:7785:-698.307,-66.5276,0	1/1:150:0,150:0:0:150:5317:-475.757,-45.1545,0	1/1:81:0,81:0:0:81:2855:-256.196,-24.3834,0	1/1:16:0,16:0:0:16:563:-50.8801,-4.81648,0	1/1:71:0,71:0:0:71:2461:-221.058,-21.3731,0	1/1:58:0,58:0:0:58:2051:-183.931,-17.4597,0	1/1:31:0,31:0:0:31:1116:-100.26,-9.33193,0	1/1:46:0,46:0:0:46:1626:-145.814,-13.8474,0	1/1:43:0,43:0:0:43:1479:-132.678,-12.9443,0	1/1:23:0,23:0:0:23:815:-73.446,-6.92369,0	1/1:31:0,31:0:0:31:1092:-98.2652,-9.33193,0	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	1/1:333:1,332:1:36:332:11751:-1049.66,-96.6447,0	1/1:183:0,183:0:0:183:6468:-580.063,-55.0885,0	0/1:260:153,107:153:5508:107:3781:-260.227,0,-417.281	1/1:284:3,281:3:93:281:9964:-881.141,-76.8158,0	0/1:128:54,74:54:1936:74:2660:-199.751,0,-135.985	1/1:143:1,142:1:36:142:5037:-448.32,-39.449,0	0/1:346:145,201:145:5176:201:7149:-534.88,0,-361.467	0/1:304:118,186:118:4204:186:6559:-496.745,0,-286.841	1/1:18:0,18:0:0:18:629:-56.5279,-5.41854,0	1/1:479:3,476:3:108:476:16930:-1504.09,-134.118,0	1/1:191:5,185:5:180:185:6553:-570.438,-40.8771,0	0/1:114:61,53:61:2173:53:1877:-133.539,0,-161.455	0/1:12:4,8:4:140:8:288:-22.4519,0,-9.33222	1/1:26:0,26:0:0:26:927:-83.4395,-7.82678,0	0/1:10:7,3:7:252:3:108:-7.05058,0,-20.0187	1/1:7:0,7:0:0:7:243:-22.1802,-2.10721,0	1/1:11:0,11:0:0:11:379:-34.39,-3.31133,0	1/1:168:0,168:0:0:168:5952:-532.899,-50.573,0	0/1:303:133,170:133:4759:170:6006:-446.139,0,-337.032	0/1:13:8,5:8:288:5:176:-12.251,0,-22.3531	1/1:1:0,1:0:0:1:27:-2.69891,-0.30103,0	0/1:136:61,75:61:2188:75:2667:-198.056,0,-156.178	0/1:15:10,5:10:341:5:176:-11.6418,0,-26.4424	0/1:291:135,156:135:4826:156:5559:-410.407,0,-346.645	0/1:41:22,19:22:779:19:665:-47.6856,0,-58.0614	1/1:42:0,42:0:0:42:1470:-132.123,-12.6433,0	0/1:202:108,94:108:3871:94:3350:-238.754,0,-287.655	0/1:225:98,127:98:3495:127:4511:-334.679,0,-246.973	0/1:296:139,157:139:4987:157:5575:-410.243,0,-359.654	1/1:168:0,168:0:0:168:5938:-531.361,-50.573,0	1/1:127:0,127:0:0:127:4474:-401.021,-38.2308,0	1/1:192:0,192:0:0:192:6787:-608.444,-57.7978,0	0/1:9:5,4:5:180:4:136:-9.68961,0,-13.8428	0/1:145:79,66:79:2840:66:2332:-165.698,0,-212.052	0/1:76:45,31:45:1620:31:1104:-76.3716,0,-123.212	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:188:78,110:78:2800:110:3881:-291.799,0,-195.623	0/1:85:40,45:40:1425:45:1573:-114.795,0,-102.939	1/1:11:0,11:0:0:11:396:-35.8923,-3.31133,0	0/1:17:6,11:6:216:11:380:-29.2148,0,-14.673	1/1:124:0,124:0:0:124:4378:-392.782,-37.3277,0	1/1:71:0,71:0:0:71:2485:-223.365,-21.3731,0	1/1:11:0,11:0:0:11:396:-35.7417,-3.31133,0	0/1:246:102,144:102:3656:144:5094:-381.677,0,-255.091	1/1:303:2,301:2:72:301:10647:-946.232,-84.3754,0	1/1:72:0,72:0:0:72:2550:-228.148,-21.6742,0	1/1:115:0,115:0:0:115:4065:-362.517,-34.6185,0	1/1:282:0,282:0:0:282:9974:-893.238,-84.8905,0	0/1:217:134,83:134:4816:83:2932:-196.709,0,-368.1	1/1:16:0,16:0:0:16:556:-50.0979,-4.81648,0	1/1:70:0,70:0:0:70:2473:-222.023,-21.0721,0	1/1:48:0,48:0:0:48:1715:-153.71,-14.4494,0	1/1:11:0,11:0:0:11:392:-35.5345,-3.31133,0	1/1:118:0,117:0:0:117:4103:-367.318,-35.2205,0	0/1:56:29,27:29:1044:27:968:-70.3024,0,-77.4171	1/1:228:0,228:0:0:228:8096:-725.961,-68.6348,0	1/1:201:0,201:0:0:201:7148:-640.81,-60.507,0	1/1:201:0,201:0:0:201:7082:-633.836,-60.507,0	1/1:58:4,54:4:144:54:1924:-159.674,-4.14612,0	0/1:28:16,12:16:576:12:432:-29.8288,0,-43.7285	1/1:139:0,138:0:0:138:4856:-435.687,-41.5421,0	0/1:217:111,106:111:3975:106:3738:-269.814,0,-292.543	1/1:494:0,493:0:0:493:17460:-1562.3,-148.408,0	1/1:65:0,65:0:0:65:2287:-205.416,-19.567,0	1/1:40:0,40:0:0:40:1432:-127.088,-12.0412,0	0/1:25:12,13:12:432:13:460:-34.1071,0,-31.5041	1/1:100:0,100:0:0:100:3523:-315.726,-30.103,0	1/1:19:0,19:0:0:19:662:-59.8255,-5.71957,0	0/1:64:33,31:33:1180:31:1100:-79.7632,0,-87.2245	1/1:54:0,54:0:0:54:1863:-167.147,-16.2556,0	0/1:19:12,7:12:432:7:248:-16.9045,0,-33.5016	0/1:51:26,25:26:932:25:858:-61.0333,0,-68.8463	0/1:41:33,8:33:1179:8:288:-13.708,0,-94.075	1/1:200:0,200:0:0:200:7107:-635.483,-60.206,0	1/1:76:0,76:0:0:76:2695:-241.119,-22.8783,0
chr08	3062405	.	CAAATA	TAAAA,TAAATA	243165	PASS	AB=0.52659,0.470371;ABP=31.3026,38.1389;AC=151,37;AF=0.803191,0.196809;AN=188;AO=9378,2186;CIGAR=1X3M1D1M,1X5M;DP=11594;DPB=10026.7;DPRA=124.656,1.56233;EPP=20367.1,4749.85;EPPR=0;GTI=1;LEN=5,1;MEANALT=1.77419,2.40909;MQM=51.8037,59.5087;MQMR=0;NS=94;NUMALT=2;ODDS=3.61533;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=327705,76454;QR=0;RO=0;RPL=9378,2186;RPP=20367.1,4749.85;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=20367.1,4749.85;SAR=9378,2186;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:103:0,103,0:0:0:103,0:3537,0:-317.556,-31.0061,0,-317.556,-31.0061,-317.556	1/1:86:0,86,0:0:0:86,0:3015,0:-270.018,-25.8886,0,-270.018,-25.8886,-270.018	1/2:206:0,100,105:0:0:100,105:3492,3631:-577.712,-294.983,-264.88,-282.795,0,-251.187	1/1:269:0,267,2:0:0:267,2:9318,68:-835.375,-80.375,0,-829.859,-74.5194,-829.257	1/2:144:0,92,52:0:0:92,52:3201,1787:-404.843,-145.422,-117.727,-259.766,0,-244.112	1/2:53:0,28,25:0:0:28,25:954,892:-150.158,-73.0381,-64.6092,-77.4688,0,-69.9431	1/1:87:0,86,0:0:0:86,0:3032,0:-271.848,-25.8886,0,-271.848,-25.8886,-271.848	1/1:230:0,229,0:0:0:229,0:8014,0:-719.365,-68.9359,0,-719.365,-68.9359,-719.365	1/1:157:0,156,0:0:0:156,0:5413,0:-484.642,-46.9607,0,-484.642,-46.9607,-484.642	1/1:83:0,83,0:0:0:83,0:2903,0:-260.449,-24.9855,0,-260.449,-24.9855,-260.449	1/1:17:0,17,0:0:0:17,0:611,0:-55.1875,-5.11751,0,-55.1875,-5.11751,-55.1875	1/1:72:0,72,0:0:0:72,0:2548,0:-228.765,-21.6742,0,-228.765,-21.6742,-228.765	1/1:59:0,59,0:0:0:59,0:2100,0:-188.338,-17.7608,0,-188.338,-17.7608,-188.338	1/1:33:0,33,0:0:0:33,0:1158,0:-104.067,-9.93399,0,-104.067,-9.93399,-104.067	1/1:46:0,46,0:0:0:46,0:1621,0:-145.5,-13.8474,0,-145.5,-13.8474,-145.5	1/1:43:0,43,0:0:0:43,0:1510,0:-135.465,-12.9443,0,-135.465,-12.9443,-135.465	1/1:23:0,23,0:0:0:23,0:819,0:-73.8079,-6.92369,0,-73.8079,-6.92369,-73.8079	1/1:34:0,34,0:0:0:34,0:1207,0:-108.606,-10.235,0,-108.606,-10.235,-108.606	1/1:4:0,4,0:0:0:4,0:144,0:-13.2947,-1.20412,0,-13.2947,-1.20412,-13.2947	1/1:339:0,338,1:0:0:338,1:11911,36:-1067.18,-101.748,0,-1064.24,-98.4509,-1063.94	1/1:186:0,186,0:0:0:186,0:6504,0:-583.557,-55.9916,0,-583.557,-55.9916,-583.557	1/2:260:0,111,149:0:0:111,149:3871,5111:-727.777,-415.193,-381.778,-312.929,0,-268.075	1/1:296:0,292,3:0:0:292,3:10268,100:-917.275,-87.9008,0,-909.181,-79.8236,-908.278	1/2:129:0,74,55:0:0:74,55:2581,1885:-361.728,-153.099,-130.822,-208.974,0,-192.417	1/1:147:0,146,1:0:0:146,1:5057,36:-452.738,-43.9504,0,-449.801,-40.6531,-449.5	1/2:348:0,204,143:0:0:204,143:7157,5002:-985.291,-406.81,-345.4,-578.497,0,-535.449	1/2:306:0,188,118:0:0:188,118:6571,4080:-863.275,-331.736,-275.143,-531.885,0,-496.364	1/1:19:0,19,0:0:0:19,0:663,0:-59.6391,-5.71957,0,-59.6391,-5.71957,-59.6391	1/1:491:0,486,2:0:0:486,2:17046,72:-1526.22,-146.301,0,-1520.34,-140.4,-1519.74	1/1:196:0,190,5:0:0:190,5:6705,180:-599.857,-57.1957,0,-585.17,-42.4545,-583.665	1/2:116:0,56,59:0:0:56,59:1955,2060:-325.506,-167.665,-150.807,-157.975,0,-140.215	1/2:13:0,9,4:0:0:9,4:313,140:-37.0164,-11.7405,-9.03119,-25.6244,0,-24.4203	1/1:27:0,27,0:0:0:27,0:936,0:-84.3608,-8.12781,0,-84.3608,-8.12781,-84.3608	1/2:10:0,3,7:0:0:3,7:99,248:-28.546,-20.557,-19.6539,-8.32596,0,-6.21875	1/1:7:0,7,0:0:0:7,0:237,0:-21.6369,-2.10721,0,-21.6369,-2.10721,-21.6369	1/1:11:0,11,0:0:0:11,0:379,0:-34.3582,-3.31133,0,-34.3582,-3.31133,-34.3582	1/1:172:0,171,0:0:0:171,0:6061,0:-542.477,-51.4761,0,-542.477,-51.4761,-542.477	1/2:304:0,173,131:0:0:173,131:6033,4603:-862.584,-374.917,-322.838,-488.017,0,-448.582	1/2:14:0,6,8:0:0:6,8:213,288:-41.1879,-23.8582,-22.0521,-17.6864,0,-15.2781	1/1:1:0,1,0:0:0:1,0:36,0:-3.59142,-0.30103,0,-3.59142,-0.30103,-3.59142	1/2:137:0,78,59:0:0:78,59:2716,2059:-386.995,-167.761,-144.28,-219.582,0,-201.821	1/2:15:0,5,9:0:0:5,9:179,302:-38.9256,-24.3502,-22.845,-14.5836,0,-11.8743	1/2:293:0,160,133:0:0:160,133:5631,4663:-836.14,-379.686,-331.521,-456.805,0,-416.768	1/2:42:0,20,22:0:0:20,22:710,776:-121.209,-63.511,-57.4904,-58.0509,0,-51.4282	1/1:43:0,43,0:0:0:43,0:1523,0:-136.885,-12.9443,0,-136.885,-12.9443,-136.885	1/2:203:0,98,105:0:0:98,105:3472,3685:-580.853,-300.164,-270.663,-281.04,0,-249.432	1/2:228:0,130,98:0:0:130,98:4594,3441:-651.245,-280.35,-241.216,-371.246,0,-341.745	1/2:298:0,160,136:0:0:160,136:5611,4803:-845.535,-391.024,-342.859,-454.561,0,-413.621	1/1:171:0,170,0:0:0:170,0:5952,0:-532.815,-51.1751,0,-532.815,-51.1751,-532.815	1/1:133:0,133,0:0:0:133,0:4609,0:-412.398,-40.037,0,-412.398,-40.037,-412.398	1/1:195:0,195,0:0:0:195,0:6774,0:-607.59,-58.7009,0,-607.59,-58.7009,-607.59	1/2:8:0,4,4:0:0:4,4:124,140:-21.6204,-11.7405,-10.5363,-10.2091,0,-9.00499	1/2:137:0,66,71:0:0:66,71:2305,2469:-387.906,-201.026,-181.158,-187.228,0,-165.855	1/2:77:0,32,45:0:0:32,45:1113,1554:-216.695,-126.6,-116.967,-90.4407,0,-76.8943	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:188:0,112,76:0:0:112,76:3908,2607:-528.752,-211.977,-178.262,-317.119,0,-294.241	1/2:87:0,47,39:0:0:47,39: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chr08	3151782	.	G	A	98126.3	PASS	AB=0.496602;ABP=3.21691;AC=152;AF=0.817204;AN=186;AO=4425;CIGAR=1X;DP=5466;DPB=5466;DPRA=0;EPP=9250.43;EPPR=2156.14;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.9853;MQMR=59.9923;NS=93;NUMALT=1;ODDS=2.3837;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158463;QR=37142;RO=1039;RPL=42;RPP=9250.43;RPPR=2156.14;RPR=4383;RUN=1;SAF=4425;SAP=9611.78;SAR=0;SRF=1039;SRP=2259.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:219:0,219:0:0:219:7830:-704.708,-65.9256,0	0/1:40:21,19:21:748:19:680:-49.488,0,-55.6041	1/1:48:1,47:1:36:47:1670:-146.989,-10.8512,0	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:36:0,36:0:0:36:1272:-114.781,-10.8371,0	1/1:78:0,78:0:0:78:2793:-251.585,-23.4803,0	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:52:0,52:0:0:52:1857:-167.409,-15.6536,0	1/1:82:0,82:0:0:82:2952:-265.913,-24.6845,0	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:49:0,49:0:0:49:1755:-158.234,-14.7505,0	1/1:45:0,44:0:0:44:1580:-142.132,-13.2453,0	1/1:60:0,60:0:0:60:2140:-192.867,-18.0618,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:54:31,23:31:1116:23:824:-58.2277,0,-84.4961	1/1:47:0,47:0:0:47:1681:-151.576,-14.1484,0	0/1:54:31,23:31:1112:23:828:-58.5885,0,-84.1357	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:140:69,71:69:2468:71:2536:-186.347,0,-180.23	0/1:85:40,45:40:1417:45:1620:-120.502,0,-102.238	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:67:0,67:0:0:67:2376:-214.096,-20.169,0	1/1:231:2,229:2:68:229:8193:-730.922,-63.0802,0	0/1:75:52,23:52:1853:23:828:-52.2669,0,-144.462	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:12:2,10:2:72:10:356:-28.7689,0,-3.22436	1/1:8:0,8:0:0:8:280:-25.5387,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:141:0,141:0:0:141:5060:-455.544,-42.4452,0	0/1:114:56,58:56:1996:58:2081:-153.242,0,-145.597	0/1:63:35,27:35:1256:27:959:-67.6019,0,-94.3216	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:51:29,22:29:1040:22:792:-56.2531,0,-78.5618	0/1:26:12,14:12:432:14:498:-37.3285,0,-31.3944	0/1:62:23,39:23:820:39:1404:-107.995,0,-55.4587	0/1:59:28,31:28:1008:31:1112:-82.6306,0,-73.2756	1/1:46:0,46:0:0:46:1637:-147.618,-13.8474,0	0/1:45:29,16:29:1014:16:576:-38.6286,0,-78.0211	0/1:63:33,30:33:1188:30:1080:-78.5484,0,-88.2637	0/1:91:45,46:45:1608:46:1656:-121.935,0,-117.616	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:112:0,112:0:0:112:4010:-361.089,-33.7154,0	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:132:63,69:63:2252:69:2468:-182.636,0,-163.207	0/1:50:15,35:15:540:35:1252:-97.9336,0,-33.885	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	0/1:57:29,28:29:1040:28:1008:-73.8776,0,-76.7557	0/1:28:9,19:9:324:19:684:-53.4615,0,-21.077	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:14:3,11:3:108:11:388:-31.0429,0,-5.86075	1/1:65:0,65:0:0:65:2321:-209.149,-19.567,0	1/1:100:0,100:0:0:100:3581:-322.496,-30.103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:133:64,69:64:2292:69:2459:-181.526,0,-166.504	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:112:0,112:0:0:112:4005:-360.638,-33.7154,0	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:84:0,84:0:0:84:2994:-269.689,-25.2865,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:27:0,27:0:0:27:966:-87.2569,-8.12781,0	1/1:53:0,53:0:0:53:1891:-170.468,-15.9546,0	0/1:27:13,14:13:460:14:504:-37.5703,0,-33.6076	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	1/1:65:0,65:0:0:65:2334:-210.319,-19.567,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:61:27,34:27:968:34:1218:-91.5636,0,-69.0745	1/1:63:0,63:0:0:63:2263:-203.932,-18.9649,0	1/1:79:0,79:0:0:79:2844:-256.197,-23.7814,0	1/1:57:0,57:0:0:57:2032:-183.149,-17.1587,0	0/1:64:36,28:36:1292:28:1008:-71.7704,0,-97.3178	1/1:81:0,81:0:0:81:2894:-260.696,-24.3834,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:68:35,33:35:1252:33:1184:-86.3983,0,-92.515	1/1:61:0,61:0:0:61:2188:-197.185,-18.3628,0	0/1:64:40,24:40:1440:24:860:-58.4559,0,-110.632	0/1:202:97,105:97:3446:105:3764:-278.151,0,-249.543	0/1:44:29,15:29:1044:15:540:-35.6912,0,-81.0295	1/1:36:0,36:0:0:36:1275:-115.051,-10.8371,0	1/1:83:0,83:0:0:83:2966:-267.173,-24.9855,0
chr08	3151938	.	C	T	109156	PASS	AB=0.438819;ABP=72.36;AC=152;AF=0.808511;AN=188;AO=4401;CIGAR=1X;DP=5617;DPB=5617;DPRA=0;EPP=208.279;EPPR=8.63818;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.982;MQMR=60;NS=94;NUMALT=1;ODDS=1.02737;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144540;QR=43358;RO=1210;RPL=2523;RPP=208.279;RPPR=8.63818;RPR=1878;RUN=1;SAF=0;SAP=9559.66;SAR=4401;SRF=0;SRP=2630.49;SRR=1210;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:815:-73.6372,-7.82678,0	1/1:12:0,12:0:0:12:394:-35.7745,-3.61236,0	0/1:43:27,16:27:960:16:492:-31.6299,0,-73.772	1/1:174:0,173:0:0:173:5637:-507.245,-52.0782,0	0/1:20:10,10:10:360:10:337:-24.6341,0,-26.7237	0/1:27:9,18:9:320:18:617:-47.7221,0,-21.0145	1/1:80:0,80:0:0:80:2676:-241.074,-24.0824,0	1/1:58:0,58:0:0:58:1925:-173.512,-17.4597,0	1/1:64:0,64:0:0:64:2171:-195.647,-19.2659,0	1/1:84:0,84:0:0:84:2725:-245.48,-25.2865,0	1/1:30:0,30:0:0:30:1019:-92.0112,-9.0309,0	1/1:56:0,56:0:0:56:1859:-167.575,-16.8577,0	1/1:51:0,51:0:0:51:1698:-153.094,-15.3525,0	1/1:59:0,59:0:0:59:2055:-185.217,-17.7608,0	1/1:56:0,56:0:0:56:1852:-166.946,-16.8577,0	1/1:44:1,43:1:36:43:1443:-126.556,-9.64705,0	1/1:29:0,29:0:0:29:952:-85.9766,-8.72987,0	1/1:38:0,38:0:0:38:1243:-112.153,-11.4391,0	1/1:25:0,25:0:0:25:835:-75.4542,-7.52575,0	1/1:85:0,85:0:0:85:2856:-257.265,-25.5876,0	1/1:122:0,122:0:0:122:3906:-351.713,-36.7257,0	0/1:74:50,24:50:1792:24:810:-50.9325,0,-139.286	1/1:55:0,55:0:0:55:1765:-159.11,-16.5567,0	0/1:102:56,45:56:2012:45:1503:-104.93,0,-150.736	1/1:47:0,47:0:0:47:1590:-143.378,-14.1484,0	0/1:202:110,92:110:3944:92:2812:-192.49,0,-294.343	0/1:136:51,85:51:1832:85:2759:-207.595,0,-124.221	1/1:28:0,28:0:0:28:865:-78.0949,-8.42884,0	1/1:195:0,195:0:0:195:6250:-562.605,-58.7009,0	1/1:32:0,31:0:0:31:943:-84.931,-9.33193,0	0/1:77:48,29:48:1720:29:942:-61.8922,0,-131.906	0/1:12:6,6:6:212:6:167:-11.692,0,-15.8124	1/1:16:0,16:0:0:16:471:-42.67,-4.81648,0	0/1:5:4,1:4:135:1:36:-2.09312,0,-10.9774	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,6:0:0:6:171:-15.6701,-1.80618,0	1/1:158:0,158:0:0:158:5294:-476.597,-47.5627,0	0/1:63:43,20:43:1540:20:611:-36.3109,0,-119.928	0/1:49:34,15:34:1211:15:502:-30.7456,0,-94.545	1/1:3:0,3:0:0:3:78:-7.27829,-0.90309,0	0/1:49:31,18:31:1112:18:599:-39.4697,0,-85.6409	0/1:29:20,9:20:707:9:309:-19.4108,0,-55.2247	0/1:66:39,27:39:1396:27:829:-55.0224,0,-106.071	0/1:58:29,29:29:1044:29:1032:-75.7337,0,-76.8151	1/1:50:0,50:0:0:50:1589:-143.273,-15.0515,0	0/1:107:56,51:56:2004:51:1681:-119.348,0,-148.423	0/1:36:18,18:18:644:18:571:-40.8513,0,-47.4535	0/1:96:52,44:52:1864:44:1385:-96.0217,0,-139.141	1/1:74:3,71:3:108:71:2313:-198.341,-12.2011,0	1/1:63:0,63:0:0:63:2090:-188.357,-18.9649,0	1/1:165:0,165:0:0:165:5535:-498.276,-49.67,0	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/1:101:55,46:55:1961:46:1561:-110.366,0,-146.359	0/1:26:14,12:14:504:12:415:-29.8523,0,-37.8713	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/1:55:30,25:30:1080:25:824:-57.9038,0,-80.9566	0/1:57:26,31:26:928:31:988:-72.0456,0,-66.6795	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:11:7,4:7:252:4:129:-8.61633,0,-19.7176	1/1:30:0,30:0:0:30:1008:-91.0181,-9.0309,0	1/1:73:1,72:1:36:72:2294:-203.102,-18.3769,0	1/1:6:0,6:0:0:6:193:-17.6856,-1.80618,0	0/1:140:76,64:76:2732:64:2110:-148.009,0,-203.978	1/1:90:2,88:2:72:88:2821:-247.276,-20.256,0	1/1:37:0,37:0:0:37:1208:-109.002,-11.1381,0	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	1/1:134:2,132:2:72:132:4376:-387.178,-33.5013,0	0/1:51:30,21:30:1080:21:687:-46.7813,0,-82.1607	1/1:14:0,14:0:0:14:443:-40.1722,-4.21442,0	1/1:30:0,30:0:0:30:992:-89.5765,-9.0309,0	1/1:55:1,54:1:36:54:1642:-144.434,-12.9584,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:69:0,69:0:0:69:2261:-203.739,-20.7711,0	0/1:65:41,24:41:1472:24:799:-52.6478,0,-113.209	1/1:85:0,84:0:0:84:2803:-252.291,-25.2865,0	1/1:91:0,90:0:0:90:2791:-251.091,-27.0927,0	1/1:41:1,40:1:36:40:1344:-117.648,-8.74396,0	1/1:67:0,66:0:0:66:2191:-197.23,-19.868,0	0/1:21:11,10:11:396:10:341:-24.6961,0,-29.6611	1/1:83:0,83:0:0:83:2810:-253.131,-24.9855,0	0/1:29:15,14:15:536:14:444:-31.5314,0,-39.8449	1/1:115:1,114:1:36:114:3894:-347.052,-31.0202,0	1/1:70:0,70:0:0:70:2198:-198.059,-21.0721,0	1/1:46:0,46:0:0:46:1524:-137.435,-13.8474,0	0/1:71:41,30:41:1468:30:973:-66.4874,0,-111.043	1/1:127:2,125:2:68:125:4182:-370.098,-31.7731,0	1/1:35:0,35:0:0:35:1113:-100.45,-10.5361,0	0/1:67:35,32:35:1260:32:1065:-75.9743,0,-93.5365	1/1:37:0,37:0:0:37:1256:-113.332,-11.1381,0	0/1:27:17,10:17:612:10:341:-22.89,0,-47.2856	0/1:74:39,35:39:1404:35:1203:-86.2903,0,-104.383	0/1:66:49,17:49:1760:17:548:-29.7548,0,-138.816	1/1:38:0,38:0:0:38:1239:-111.789,-11.4391,0	1/1:85:0,85:0:0:85:2916:-262.666,-25.5876,0
chr08	3156984	.	C	T	320104	PASS	AB=0.493097;ABP=5.13871;AC=153;AF=0.81383;AN=188;AO=11585;CIGAR=1X;DP=14216;DPB=14216;DPRA=0;EPP=24968.8;EPPR=5692.28;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9734;MQMR=59.9833;NS=94;NUMALT=1;ODDS=6.15798;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=412603;QR=93115;RO=2628;RPL=5298;RPP=186.348;RPPR=13.0083;RPR=6287;RUN=1;SAF=5318;SAP=171.817;SAR=6267;SRF=1261;SRP=12.2944;SRR=1367;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:90:0,90:0:0:90:3207:-288.848,-27.0927,0	1/1:178:0,178:0:0:178:6307:-567.725,-53.5833,0	0/1:304:115,189:115:4075:189:6738:-514.984,0,-275.427	1/1:291:0,291:0:0:291:10412:-936.942,-87.5997,0	0/1:122:77,45:77:2743:45:1603:-107.834,0,-210.387	0/1:102:56,46:56:1987:46:1636:-116.824,0,-148.399	1/1:160:1,159:1:36:159:5626:-502.855,-44.5665,0	1/1:244:0,244:0:0:244:8679:-781.108,-73.4513,0	1/1:188:0,188:0:0:188:6671:-600.364,-56.5936,0	1/1:147:0,147:0:0:147:5235:-471.29,-44.2514,0	1/1:113:0,113:0:0:113:4002:-360.372,-34.0164,0	1/1:196:0,196:0:0:196:6997:-629.79,-59.0019,0	1/1:183:0,183:0:0:183:6524:-587.243,-55.0885,0	1/1:145:0,145:0:0:145:5104:-459.508,-43.6494,0	1/1:193:1,192:1:32:192:6809:-609.682,-54.8995,0	1/1:170:2,168:2:72:168:5999:-533.178,-44.3384,0	1/1:123:2,121:2:72:121:4289:-379.353,-30.19,0	1/1:122:0,122:0:0:122:4343:-391.041,-36.7257,0	1/1:90:0,90:0:0:90:3223:-290.291,-27.0927,0	1/1:235:0,235:0:0:235:8422:-757.957,-70.7421,0	1/1:223:0,223:0:0:223:7965:-716.503,-67.1297,0	0/1:80:54,26:54:1910:26:932:-60.1165,0,-148.094	1/1:146:1,145:1:36:145:5117:-457.065,-40.3521,0	0/1:147:66,81:66:2368:81:2904:-217.344,0,-169.127	1/1:108:0,108:0:0:108:3838:-345.598,-32.5112,0	0/1:339:171,167:171:6073:167:5979:-436.147,0,-444.606	0/1:261:112,149:112:3965:149:5302:-398.746,0,-278.472	1/1:99:0,99:0:0:99:3525:-317.459,-29.802,0	1/1:301:0,301:0:0:301:10749:-967.299,-90.61,0	1/1:150:7,143:7:248:143:5068:-433.604,-22.4903,0	0/1:218:101,117:101:3579:117:4159:-308.87,0,-256.693	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	1/1:409:0,409:0:0:409:14528:-1307.27,-123.121,0	0/1:144:80,64:80:2835:64:2279:-162.023,0,-212.041	0/1:129:63,66:63:2214:66:2357:-173.555,0,-160.692	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:219:116,103:116:4130:103:3686:-266.016,0,-305.959	0/1:82:35,47:35:1237:47:1659:-124.906,0,-86.9478	0/1:208:125,83:125:4381:83:2951:-203.21,0,-331.787	0/1:204:101,103:101:3589:103:3680:-269.994,0,-261.807	1/1:162:1,161:1:36:161:5744:-513.481,-45.1686,0	0/1:151:71,80:71:2502:80:2876:-213.621,0,-179.978	0/1:158:74,84:74:2592:84:2982:-221.05,0,-185.964	0/1:240:124,116:124:4366:116:4134:-299.997,0,-320.868	1/1:146:1,145:1:36:145:5157:-460.675,-40.3521,0	1/1:166:1,165:1:36:165:5887:-526.343,-46.3727,0	1/1:149:1,148:1:36:148:5286:-472.277,-41.2552,0	0/1:12:7,5:7:252:5:175:-12.4808,0,-19.4166	0/1:189:130,59:130:4619:59:2100:-132.375,0,-358.979	0/1:70:27,43:27:960:43:1518:-115.84,0,-65.6442	0/1:18:8,10:8:280:10:356:-26.9627,0,-20.1208	0/1:157:74,83:74:2629:83:2961:-219.459,0,-189.595	0/1:84:41,43:41:1459:43:1540:-113.607,0,-106.3	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:30:18,11:18:639:11:384:-25.8053,0,-48.7488	1/1:146:1,145:1:36:145:5165:-461.392,-40.3521,0	1/1:201:0,201:0:0:201:7196:-647.695,-60.507,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:156:73,83:73:2594:83:2972:-220.752,0,-186.748	1/1:274:0,274:0:0:274:9777:-879.878,-82.4822,0	1/1:115:0,115:0:0:115:4059:-365.5,-34.6185,0	1/1:107:0,107:0:0:107:3808:-342.917,-32.2102,0	1/1:184:2,182:2:72:182:6506:-578.701,-48.5528,0	0/1:167:99,68:99:3535:68:2431:-168.773,0,-268.087	1/1:66:0,66:0:0:66:2341:-210.947,-19.868,0	1/1:108:0,108:0:0:108:3863:-347.863,-32.5112,0	1/1:176:0,176:0:0:176:6230:-560.801,-52.9813,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:71:0,71:0:0:71:2543:-229.12,-21.3731,0	0/1:141:65,75:65:2305:75:2684:-199.39,0,-165.294	1/1:306:0,306:0:0:306:10912:-981.956,-92.1152,0	1/1:207:1,206:1:36:206:7365:-659.3,-58.7149,0	1/1:219:0,219:0:0:219:7828:-704.548,-65.9256,0	1/1:152:0,152:0:0:152:5413:-487.302,-45.7566,0	0/1:18:6,12:6:212:12:432:-33.8027,0,-14.0063	1/1:105:1,104:1:36:104:3723:-331.672,-28.0099,0	0/1:145:70,75:70:2494:75:2684:-198.153,0,-181.063	1/1:287:1,286:1:36:286:10183:-912.801,-82.7973,0	1/1:186:0,186:0:0:186:6583:-592.555,-55.9916,0	1/1:143:0,143:0:0:143:5123:-461.211,-43.0473,0	0/1:211:108,103:108:3796:103:3647:-264.917,0,-278.325	1/1:342:0,342:0:0:342:12167:-1094.88,-102.952,0	1/1:76:0,76:0:0:76:2686:-241.985,-22.8783,0	0/1:157:77,80:77:2718:80:2813:-206.147,0,-197.603	1/1:152:0,152:0:0:152:5387:-484.964,-45.7566,0	0/1:112:59,53:59:2088:53:1891:-136.752,0,-154.472	0/1:204:88,116:88:3095:116:4128:-310.295,0,-217.368	0/1:158:108,50:108:3858:50:1779:-112.829,0,-299.852	1/1:158:0,158:0:0:158:5667:-510.145,-47.5627,0	1/1:274:0,274:0:0:274:9739:-876.464,-82.4822,0
chr08	3157041	.	T	A	193613	PASS	AB=0.393422;ABP=539.933;AC=152;AF=0.808511;AN=188;AO=9203;CIGAR=1X;DP=12576;DPB=12576;DPRA=0;EPP=19987.1;EPPR=7327.39;GTI=6;LEN=1;MEANALT=1;MQM=59.9669;MQMR=59.9834;NS=94;NUMALT=1;ODDS=1.91804;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329098;QR=120879;RO=3373;RPL=1;RPP=19978.4;RPPR=218.832;RPR=9202;RUN=1;SAF=9202;SAP=19978.4;SAR=1;SRF=1976;SRP=218.832;SRR=1397;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:74:0,74:0:0:74:2633:-237.188,-22.2762,0	1/1:91:0,91:0:0:91:3241:-291.911,-27.3937,0	0/1:228:158,70:158:5672:70:2508:-157.336,0,-441.962	1/1:201:2,199:2:72:199:7132:-635.1,-53.6703,0	0/1:151:80,71:80:2876:71:2548:-184.112,0,-213.621	0/1:72:36,36:36:1288:36:1284:-93.7608,0,-94.5494	1/1:126:0,126:0:0:126:4486:-403.68,-37.9298,0	1/1:326:0,326:0:0:326:11631:-1046.66,-98.1358,0	1/1:159:2,157:2:72:157:5623:-499.318,-41.027,0	1/1:194:0,194:0:0:194:6919:-622.774,-58.3998,0	1/1:71:1,70:1:36:70:2512:-222.734,-17.7749,0	1/1:155:1,154:1:32:154:5532:-494.803,-43.4603,0	1/1:117:2,115:2:72:115:4101:-362.438,-28.3838,0	1/1:87:0,87:0:0:87:3101:-279.293,-26.1896,0	1/1:77:3,74:3:108:74:2649:-228.579,-13.1041,0	1/1:67:1,66:1:36:66:2341:-207.35,-16.5707,0	1/1:39:2,37:2:72:37:1309:-111.273,-4.90345,0	1/1:63:1,62:1:36:62:2213:-195.835,-15.3666,0	1/1:44:1,43:1:36:43:1532:-134.575,-9.64705,0	1/1:140:1,139:1:36:139:4965:-443.4,-38.5459,0	1/1:138:0,138:0:0:138:4917:-442.668,-41.5421,0	0/1:164:128,36:128:4549:36:1281:-66.2224,0,-360.209	1/1:189:0,189:0:0:189:6733:-606.043,-56.8947,0	0/1:101:60,41:60:2152:41:1468:-102.012,0,-163.543	1/1:158:0,158:0:0:158:5656:-509.16,-47.5627,0	0/1:486:239,247:239:8546:247:8815:-647.026,0,-622.835	0/1:350:159,191:159:5692:191:6832:-509.591,0,-407.038	1/1:45:3,42:3:108:42:1512:-126.299,-3.47118,0	1/1:221:2,219:2:72:219:7837:-698.517,-59.6909,0	1/1:172:3,169:3:108:169:6060:-535.426,-41.702,0	0/1:175:98,77:98:3516:77:2772:-197.038,0,-263.969	0/1:18:15,3:15:540:3:100:-3.9119,0,-43.518	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:17:0,17:0:0:17:597:-54.0561,-5.11751,0	1/1:20:0,20:0:0:20:704:-63.6845,-6.0206,0	1/1:220:8,212:8:288:212:7599:-657.679,-39.9592,0	0/1:216:115,101:115:4112:101:3616:-260.623,0,-305.243	0/1:86:58,28:58:2084:28:1008:-65.1478,0,-161.941	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:190:151,39:151:5404:39:1396:-68.7425,0,-429.295	0/1:49:31,18:31:1116:18:625:-41.822,0,-86.0012	0/1:294:176,118:176:6304:118:4228:-292.197,0,-478.82	0/1:94:63,31:63:2260:31:1101:-71.1024,0,-175.366	1/1:79:4,75:4:140:75:2695:-229.835,-10.8368,0	0/1:180:88,92:88:3160:92:3304:-243.235,0,-230.436	0/1:177:102,75:102:3656:75:2677:-187.891,0,-275.961	0/1:311:219,92:219:7844:92:3274:-201.257,0,-612.339	1/1:140:1,139:1:36:139:4972:-444.03,-38.5459,0	1/1:204:0,204:0:0:204:7298:-656.863,-61.4101,0	1/1:145:1,144:1:36:144:5121:-457.436,-40.0511,0	0/1:18:12,6:12:432:6:212:-14.0063,0,-33.8027	0/1:211:128,83:128:4600:83:2976:-204.555,0,-350.645	0/1:116:58,58:58:2052:58:2076:-152.191,0,-150.033	0/1:21:7,14:7:248:14:500:-39.0145,0,-16.3426	0/1:192:113,79:113:4052:79:2821:-196.33,0,-307.069	0/1:64:32,32:32:1148:32:1144:-84.0036,0,-84.3639	1/1:12:0,12:0:0:12:413:-37.4978,-3.61236,0	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2796	1/1:123:0,123:0:0:123:4401:-396.261,-37.0267,0	1/1:120:3,117:3:108:117:4196:-367.745,-26.0484,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:217:144,73:144:5144:73:2624:-171.083,0,-397.779	1/1:273:2,271:2:72:271:9707:-866.668,-75.3445,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:93:0,93:0:0:93:3328:-299.738,-27.9958,0	1/1:216:5,211:5:180:211:7545:-662.626,-48.5583,0	0/1:286:170,116:170:6104:116:4089:-282.098,0,-463.364	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:113:0,113:0:0:113:4044:-364.148,-34.0164,0	1/1:75:0,75:0:0:75:2688:-242.156,-22.5773,0	1/1:23:0,23:0:0:23:824:-74.4695,-6.92369,0	1/1:194:0,194:0:0:194:6945:-625.078,-58.3998,0	0/1:164:90,74:90:3232:74:2641:-188.566,0,-241.732	1/1:264:1,263:1:36:263:9403:-842.634,-75.8736,0	1/1:164:1,163:1:36:163:5860:-523.91,-45.7706,0	1/1:197:3,194:3:104:194:6911:-612.353,-49.6001,0	1/1:127:2,125:2:72:125:4469:-395.542,-31.3941,0	0/1:26:8,18:8:288:18:644:-50.4638,0,-18.4406	1/1:166:5,161:5:180:161:5761:-502.052,-33.4189,0	0/1:154:124,30:124:4448:30:1065:-49.8011,0,-354.131	1/1:343:1,342:1:36:342:12276:-1101.08,-99.655,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:87:1,86:1:36:86:3076:-273.47,-22.5913,0	0/1:119:93,26:93:3348:26:924:-46.7959,0,-265.713	1/1:160:2,158:2:72:158:5668:-503.401,-41.3281,0	1/1:34:0,34:0:0:34:1209:-109.114,-10.235,0	0/1:98:72,26:72:2584:26:936:-55.0585,0,-203.308	1/1:78:4,74:4:144:74:2656:-225.972,-10.1667,0	0/1:104:61,43:61:2192:43:1544:-107.946,0,-166.238	0/1:145:86,59:86:3092:59:2120:-147.419,0,-234.857	0/1:131:104,27:104:3736:27:972:-48.363,0,-297.005	1/1:148:1,147:1:36:147:5264:-470.261,-40.9542,0	1/1:138:2,136:2:72:136:4888:-433.233,-34.7054,0
chr08	3159346	.	G	C	126924	PASS	AB=0.513658;ABP=5.73882;AC=153;AF=0.81383;AN=188;AO=4564;CIGAR=1X;DP=5397;DPB=5397;DPRA=0;EPP=219.147;EPPR=1417.2;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.8339;MQMR=59.5467;NS=94;NUMALT=1;ODDS=1.49816;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160951;QR=29463;RO=825;RPL=84;RPP=9197.42;RPPR=1417.2;RPR=4480;RUN=1;SAF=2029;SAP=124.828;SAR=2535;SRF=825;SRP=1794.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:667:-60.35,-5.71957,0	1/1:66:1,65:1:36:65:2285:-202.3,-16.2697,0	0/1:105:51,54:51:1790:54:1928:-142.042,0,-129.492	1/1:63:0,63:0:0:63:2252:-202.89,-18.9649,0	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:23:7,16:7:252:16:551:-42.9892,0,-16.1053	1/1:56:0,56:0:0:56:1961:-176.738,-16.8577,0	1/1:61:0,61:0:0:61:2169:-195.475,-18.3628,0	1/1:43:0,43:0:0:43:1539:-138.801,-12.9443,0	1/1:49:0,49:0:0:49:1712:-154.36,-14.7505,0	1/1:99:0,98:0:0:98:3451:-310.441,-29.5009,0	1/1:113:0,113:0:0:113:3985:-358.839,-34.0164,0	1/1:137:0,137:0:0:137:4825:-434.399,-41.2411,0	1/1:91:0,91:0:0:91:3195:-287.761,-27.3937,0	1/1:85:0,85:0:0:85:2975:-267.982,-25.5876,0	1/1:90:0,90:0:0:90:3171:-285.59,-27.0927,0	1/1:125:0,125:0:0:125:4395:-395.681,-37.6288,0	1/1:68:0,68:0:0:68:2413:-217.418,-20.47,0	1/1:56:0,56:0:0:56:1977:-178.132,-16.8577,0	1/1:68:0,68:0:0:68:2395:-215.805,-20.47,0	1/1:45:0,45:0:0:45:1583:-142.748,-13.5464,0	0/1:46:40,6:40:1401:6:216:-5.94313,0,-112.534	1/1:30:0,30:0:0:30:1060:-95.7099,-9.0309,0	0/1:44:19,25:19:684:25:888:-66.9937,0,-48.6388	1/1:30:0,30:0:0:30:1076:-97.1482,-9.0309,0	0/1:97:55,42:55:1972:42:1496:-105.73,0,-148.549	0/1:81:52,29:52:1856:29:1025:-68.1711,0,-142.929	1/1:45:0,45:0:0:45:1563:-140.956,-13.5464,0	1/1:85:2,83:2:72:83:2948:-258.699,-18.7508,0	1/1:44:2,41:2:72:41:1451:-124.093,-6.36751,0	0/1:46:28,18:28:1004:18:640:-44.0819,0,-76.6436	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4414	1/1:8:0,8:0:0:8:284:-25.8987,-2.40824,0	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:160:0,160:0:0:160:5631:-506.918,-48.1648,0	0/1:32:21,11:21:756:11:396:-26.3436,0,-58.7172	0/1:72:24,48:24:864:48:1665:-128.344,0,-56.408	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:36:15,21:15:540:21:708:-53.1854,0,-38.0917	0/1:53:26,27:26:936:27:942:-69.1377,0,-68.6033	0/1:45:17,28:17:612:28:996:-76.3786,0,-41.8593	0/1:40:14,26:14:504:26:919:-70.985,0,-33.6565	1/1:80:0,80:0:0:80:2806:-252.779,-24.0824,0	0/1:50:40,10:40:1432:10:352:-16.9667,0,-114.028	0/1:44:21,23:21:756:23:824:-61.238,0,-55.1219	0/1:56:23,33:23:824:33:1163:-88.112,0,-57.5791	1/1:46:0,46:0:0:46:1622:-146.263,-13.8474,0	1/1:62:0,62:0:0:62:2203:-198.529,-18.6639,0	1/1:59:0,58:0:0:58:2067:-185.971,-17.4597,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:58:25,33:25:892:33:1180:-89.0483,0,-63.072	0/1:26:15,11:15:536:11:388:-27.4306,0,-40.7415	0/1:12:9,3:9:324:3:104:-6.09045,0,-25.879	0/1:49:20,29:20:708:29:1036:-78.7986,0,-49.2859	0/1:8:1,7:1:36:7:230:-18.613,0,-1.19003	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:51:0,51:0:0:51:1812:-163.355,-15.3525,0	1/1:145:0,145:0:0:145:5080:-457.352,-43.6494,0	1/1:1:0,1:0:0:1:32:-3.19913,-0.30103,0	0/1:50:30,20:30:1057:20:720:-50.0727,0,-80.3875	1/1:63:0,63:0:0:63:2228:-200.778,-18.9649,0	1/1:28:0,27:0:0:27:946:-85.0934,-8.12781,0	1/1:36:0,36:0:0:36:1265:-114.128,-10.8371,0	1/1:52:1,51:1:36:51:1804:-159.04,-12.0553,0	0/1:56:46,10:46:1644:10:356:-15.5236,0,-131.388	1/1:72:0,71:0:0:71:2523:-227.11,-21.3731,0	1/1:49:0,49:0:0:49:1739:-156.78,-14.7505,0	1/1:108:0,108:0:0:108:3807:-342.83,-32.5112,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:34:0,34:0:0:34:1197:-107.991,-10.235,0	0/1:65:38,27:38:1356:27:968:-67.8704,0,-102.772	1/1:66:0,66:0:0:66:2312:-208.34,-19.868,0	1/1:55:0,55:0:0:55:1942:-175.048,-16.5567,0	1/1:68:0,68:0:0:68:2385:-214.897,-20.47,0	1/1:41:0,41:0:0:41:1460:-131.37,-12.3422,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8381	1/1:44:0,44:0:0:44:1576:-142.121,-13.2453,0	0/1:82:37,45:37:1324:45:1596:-119.211,0,-94.6653	1/1:89:0,87:0:0:87:3060:-275.281,-26.1896,0	1/1:116:0,116:0:0:116:4102:-369.369,-34.9195,0	1/1:96:0,96:0:0:96:3379:-304.327,-28.8989,0	0/1:59:14,45:14:500:45:1542:-121.26,0,-27.5672	1/1:140:0,139:0:0:139:4930:-443.476,-41.8432,0	1/1:47:0,47:0:0:47:1629:-146.894,-14.1484,0	0/1:65:20,45:20:720:45:1564:-121.482,0,-45.5618	1/1:94:0,94:0:0:94:3339:-300.72,-28.2968,0	0/1:69:12,57:12:428:57:2014:-160.761,0,-18.0831	0/1:115:47,68:47:1671:68:2367:-178.668,0,-116.058	0/1:61:30,31:30:1080:31:1091:-80.1359,0,-79.1458	1/1:48:0,48:0:0:48:1669:-150.494,-14.4494,0	1/1:159:0,159:0:0:159:5606:-504.662,-47.8638,0
chr08	3159347	.	C	T	14303.6	PASS	AB=0.476868;ABP=10.8461;AC=35;AF=0.18617;AN=188;AO=811;CIGAR=1X;DP=5488;DPB=5488;DPRA=0.818218;EPP=1387.19;EPPR=258.051;GTI=1;LEN=1;MEANALT=1.025;MQM=59.5783;MQMR=59.8143;NS=94;NUMALT=1;ODDS=0.398219;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28830;QR=165795;RO=4675;RPL=44;RPP=1402.63;RPPR=9438.14;RPR=767;RUN=1;SAF=809;SAP=1746.75;SAR=2;SRF=2051;SRP=155.515;SRR=2624;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.1634	0/0:63:63,0:63:2233:0:0:0,-18.9649,-201.22	0/1:103:54,49:54:1928:49:1743:-125.865,0,-142.645	0/0:65:65,0:65:2301:0:0:0,-19.5669,-207.138	0/1:16:11,5:11:381:5:180:-11.7356,0,-29.8042	0/1:23:16,7:16:561:7:252:-16.1053,0,-43.8919	0/0:57:57,0:57:2017:0:0:0,-17.1587,-181.665	0/0:65:65,0:65:2288:0:0:0,-19.5669,-206.18	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.05	0/0:54:53,1:53:1857:1:20:0,-14.2557,-165.4	0/0:101:101,0:101:3566:0:0:0,-30.404,-321.146	0/0:118:118,0:118:4196:0:0:0,-35.5215,-377.82	0/0:137:137,0:137:4857:0:0:0,-41.2411,-437.279	0/0:91:91,0:91:3251:0:0:0,-27.3937,-292.541	0/0:86:86,0:86:3054:0:0:0,-25.8886,-275.088	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.91	0/0:130:130,0:130:4601:0:0:0,-39.1339,-414.181	0/0:72:72,0:72:2524:0:0:0,-21.6742,-227.219	0/0:58:58,0:58:2054:0:0:0,-17.4597,-184.9	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:47:47,0:47:1652:0:0:0,-14.1484,-148.937	0/1:45:6,39:6:212:39:1380:-110.948,0,-5.87845	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.548	0/1:42:23,19:23:824:19:680:-48.8797,0,-61.8401	0/0:30:30,0:30:1044:0:0:0,-9.0309,-94.2623	0/1:96:43,53:43:1502:53:1904:-142.733,0,-106.075	0/1:82:30,52:30:1076:52:1860:-142.987,0,-72.4622	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.69	0/0:88:86,2:86:3030:2:72:0,-19.6539,-266.082	0/0:44:42,2:42:1504:2:72:0,-6.4086,-128.816	0/1:47:20,27:20:712:27:968:-73.1912,0,-50.2527	0/1:7:2,5:2:72:5:180:-14.4414,0,-4.72951	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6623	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:167:166,0:166:5850:0:0:0,-49.971,-526.364	0/1:31:10,21:10:356:21:744:-57.9391,0,-23.0431	0/1:70:45,25:45:1589:25:888:-59.1665,0,-122.084	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.58328	0/1:36:21,15:21:756:15:540:-38.0933,0,-57.3395	0/1:56:30,26:30:1049:26:932:-67.3396,0,-77.8605	0/1:46:28,18:28:988:18:624:-42.6263,0,-75.3743	0/1:38:24,14:24:864:14:504:-34.2585,0,-66.6434	0/0:80:80,0:80:2819:0:0:0,-24.0824,-253.949	0/1:51:10,41:10:352:41:1441:-114.506,0,-16.6657	0/1:45:23,22:23:824:22:760:-55.1695,0,-60.937	0/1:57:34,23:34:1180:23:824:-57.2781,0,-89.3365	0/0:46:46,0:46:1601:0:0:0,-13.8474,-144.37	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.767	0/0:63:63,0:63:2236:0:0:0,-18.9649,-201.122	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:57:36,21:36:1292:21:737:-49.4871,0,-99.4251	0/1:26:11,15:11:396:15:540:-41.1027,0,-28.156	0/1:11:3,8:3:104:8:288:-22.9416,0,-6.39148	0/1:51:32,19:32:1137:19:672:-45.4478,0,-87.2795	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.791	0/0:149:149,0:149:5308:0:0:0,-44.8535,-477.836	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59783	0/1:47:20,27:20:716:27:968:-73.289,0,-50.6147	0/0:62:62,0:62:2157:0:0:0,-18.6639,-194.387	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.02	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/0:51:50,1:50:1783:1:36:0,-11.7543,-157.154	0/1:55:10,45:10:356:45:1595:-127.283,0,-15.8246	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.548	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.122	0/0:108:108,0:108:3843:0:0:0,-32.5112,-346.068	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:34:34,0:34:1193:0:0:0,-10.235,-107.635	0/1:64:28,36:28:996:36:1284:-96.5959,0,-70.689	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.636	0/0:69:69,0:69:2440:0:0:0,-20.7711,-219.845	0/0:42:42,0:42:1500:0:0:0,-12.6433,-134.969	0/1:9:4,5:4:144:5:176:-13.4739,0,-10.6043	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.556	0/1:80:44,36:44:1568:36:1261:-89.698,0,-117.294	0/0:89:89,0:89:3169:0:0:0,-26.7917,-285.386	0/0:125:125,0:125:4426:0:0:0,-37.6287,-398.513	0/0:97:97,0:97:3414:0:0:0,-29.1999,-307.475	0/1:64:50,14:50:1769:14:504:-26.424,0,-140.18	0/0:148:147,1:147:5264:1:36:0,-40.9542,-470.253	0/0:49:49,0:49:1724:0:0:0,-14.7505,-155.442	0/1:70:47,22:47:1668:22:788:-50.219,0,-129.384	0/0:97:97,0:97:3447:0:0:0,-29.1999,-310.436	0/1:68:56,12:56:1991:12:417:-17.3864,0,-158.993	0/1:112:68,44:68:2432:44:1564:-107.336,0,-185.42	0/1:63:32,31:32:1125:31:1108:-81.0615,0,-82.5911	0/0:48:48,0:48:1692:0:0:0,-14.4494,-152.563	0/0:165:165,0:165:5842:0:0:0,-49.6699,-525.889
chr08	3191919	.	A	T	179844	PASS	AB=0.478135;ABP=20.1979;AC=150;AF=0.806452;AN=186;AO=8321;CIGAR=1X;DP=10502;DPB=10502;DPRA=114.141;EPP=18071.8;EPPR=4730.31;GTI=3;LEN=1;MEANALT=1.04348;MQM=59.9755;MQMR=59.9931;NS=93;NUMALT=1;ODDS=0.139719;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=298128;QR=78033;RO=2177;RPL=8321;RPP=18071.8;RPPR=4730.31;RPR=0;RUN=1;SAF=0;SAP=18071.8;SAR=8321;SRF=0;SRP=4730.31;SRR=2177;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:90:0,90:0:0:90:3217:-289.751,-27.0927,0	1/1:97:1,96:1:36:96:3452:-307.293,-25.6016,0	0/1:158:86,72:86:3072:72:2588:-185.606,0,-229.146	1/1:201:0,201:0:0:201:7192:-647.336,-60.507,0	0/1:96:43,53:43:1532:53:1904:-142.739,0,-109.274	0/1:50:24,26:24:860:26:932:-69.1474,0,-62.6703	1/1:104:1,103:1:36:103:3700:-329.603,-27.7088,0	1/1:209:0,209:0:0:209:7496:-674.681,-62.9153,0	1/1:126:0,126:0:0:126:4489:-403.99,-37.9298,0	1/1:119:0,119:0:0:119:4245:-382.229,-35.8226,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:129:0,129:0:0:129:4617:-415.692,-38.8329,0	1/1:103:0,103:0:0:103:3708:-333.92,-31.0061,0	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	1/1:115:0,115:0:0:115:4140:-372.781,-34.6185,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:269:0,269:0:0:269:9614:-865.212,-80.9771,0	1/1:218:0,218:0:0:218:7824:-704.129,-65.6245,0	0/1:90:52,38:52:1864:38:1360:-95.6079,0,-140.947	1/1:183:0,183:0:0:183:6576:-591.918,-55.0885,0	0/1:56:35,21:35:1252:21:752:-51.1486,0,-96.1274	1/1:188:0,188:0:0:188:6729:-605.681,-56.5936,0	0/1:370:214,156:214:7652:156:5557:-388.874,0,-577.336	0/1:362:202,160:202:7244:160:5724:-406.305,0,-543.039	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:185:0,185:0:0:185:6628:-596.598,-55.6906,0	1/1:156:5,151:5:180:151:5428:-472.095,-30.4086,0	0/1:152:71,81:71:2548:81:2916:-216.918,0,-183.814	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:225:1,224:1:36:224:8010:-717.32,-64.1335,0	0/1:140:71,69:71:2548:69:2480:-181.309,0,-187.426	0/1:36:12,23:12:432:23:824:-63.5875,0,-28.3253	.:.:.:.:.:.:.:.	0/1:221:120,101:120:4308:101:3616:-259.118,0,-321.323	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3053	0/1:245:113,131:113:4056:131:4712:-350.426,0,-291.415	0/1:61:30,31:30:1080:31:1116:-82.3889,0,-79.1504	1/1:92:0,92:0:0:92:3308:-297.937,-27.6948,0	0/1:220:118,102:118:4228:102:3636:-261.22,0,-314.473	0/1:166:96,70:96:3440:70:2516:-176.721,0,-259.842	0/1:194:98,96:98:3516:96:3448:-252.132,0,-258.249	1/1:88:0,88:0:0:88:3160:-284.555,-26.4906,0	1/1:121:0,121:0:0:121:4333:-390.143,-36.4246,0	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:122:52,70:52:1872:70:2492:-187.801,0,-132.033	0/1:101:54,47:54:1936:47:1684:-121.443,0,-144.112	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:196:85,111:85:3048:111:3984:-299.747,0,-215.547	0/1:87:35,52:35:1260:52:1868:-142.165,0,-87.5159	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	1/1:104:0,104:0:0:104:3736:-336.439,-31.3071,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:151:67,84:67:2400:84:3016:-226.215,0,-170.801	1/1:184:0,184:0:0:184:6600:-593.949,-55.3895,0	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	1/1:238:3,235:3:108:235:8409:-746.738,-61.57,0	0/1:223:167,56:167:5976:56:2012:-114.223,0,-470.817	1/1:26:0,26:0:0:26:936:-84.4896,-7.82678,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:174:0,173:0:0:173:6200:-557.779,-52.0782,0	0/1:146:60,86:60:2152:86:3080:-233.108,0,-149.997	1/1:189:0,189:0:0:189:6775:-609.822,-56.8947,0	1/1:139:0,139:0:0:139:4980:-448.348,-41.8432,0	1/1:166:0,166:0:0:166:5926:-533.447,-49.971,0	1/1:150:1,148:1:36:148:5284:-472.099,-41.615,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:122:5,117:5:180:117:4151:-357.219,-20.1736,0	0/1:138:69,69:69:2465:69:2472:-181.192,0,-180.56	1/1:279:0,279:0:0:279:9954:-895.799,-83.9874,0	1/1:87:0,87:0:0:87:3120:-280.957,-26.1896,0	1/1:97:0,97:0:0:97:3476:-313.051,-29.1999,0	0/1:72:30,42:30:1080:42:1512:-114.7,0,-75.8391	1/1:168:1,167:1:36:167:6004:-536.864,-46.9748,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:76:37,39:37:1332:39:1400:-103.421,0,-97.3041	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/1:42:19,23:19:680:23:828:-62.2009,0,-48.8859	0/1:93:61,32:61:2188:32:1148:-75.634,0,-169.19	1/1:159:0,159:0:0:159:5685:-511.768,-47.8638,0	1/1:138:0,138:0:0:138:4952:-445.828,-41.5421,0
chr08	3249887	.	G	A	174661	PASS	AB=0.48417;ABP=11.4665;AC=152;AF=0.808511;AN=188;AO=8177;CIGAR=1X;DP=10190;DPB=10190;DPRA=0;EPP=17759.1;EPPR=4354.65;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9456;MQMR=60;NS=94;NUMALT=1;ODDS=4.64332;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=289874;QR=71554;RO=2008;RPL=8177;RPP=17759.1;RPPR=4363.33;RPR=0;RUN=1;SAF=8177;SAP=17759.1;SAR=0;SRF=2007;SRP=4354.65;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54:0:0:54:1921:-173.165,-16.2556,0	1/1:249:0,249:0:0:249:8765:-788.846,-74.9565,0	0/1:125:71,54:71:2535:54:1909:-134.457,0,-190.772	1/1:174:1,173:1:36:173:6152:-550.178,-48.7809,0	0/1:87:40,47:40:1432:47:1680:-125.241,0,-102.988	0/1:49:25,24:25:881:24:864:-63.3321,0,-64.8554	1/1:198:0,198:0:0:198:7030:-632.718,-59.6039,0	1/1:209:1,208:1:36:208:7277:-651.388,-59.317,0	1/1:68:0,68:0:0:68:2413:-217.423,-20.47,0	1/1:111:0,111:0:0:111:3923:-353.264,-33.4143,0	1/1:37:0,37:0:0:37:1315:-118.652,-11.1381,0	1/1:53:0,53:0:0:53:1877:-169.207,-15.9546,0	1/1:51:0,51:0:0:51:1807:-162.91,-15.3525,0	1/1:63:0,63:0:0:63:2227:-200.692,-18.9649,0	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:31:0,31:0:0:31:1083:-97.7767,-9.33193,0	1/1:243:0,243:0:0:243:8640:-777.596,-73.1503,0	1/1:184:0,184:0:0:184:6550:-589.585,-55.3895,0	0/1:161:111,50:111:3949:50:1777:-111.743,0,-307.136	1/1:101:0,101:0:0:101:3570:-321.415,-30.404,0	0/1:115:55,60:55:1963:60:2137:-157.847,0,-142.326	1/1:89:0,89:0:0:89:3173:-285.793,-26.7917,0	0/1:315:168,147:168:5988:147:5207:-373.945,0,-444.202	0/1:231:101,130:101:3624:130:4638:-348.044,0,-256.827	1/1:25:0,25:0:0:25:885:-79.9665,-7.52575,0	1/1:316:0,316:0:0:316:11209:-1008.68,-95.1255,0	1/1:144:1,143:1:36:143:5064:-452.306,-39.75,0	0/1:118:56,62:56:1995:62:2203:-163.012,0,-144.302	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:9:0,9:0:0:9:309:-28.1407,-2.70927,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:155:0,155:0:0:155:5532:-497.92,-46.6597,0	0/1:259:130,128:130:4593:128:4511:-328.131,0,-335.508	0/1:53:25,28:25:864:28:1004:-74.7213,0,-62.1177	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:155:66,89:66:2351:89:3127:-234.997,0,-165.189	0/1:35:13,22:13:468:22:758:-57.9981,0,-31.9236	0/1:206:112,92:112:3972:92:3244:-230.464,0,-295.981	0/1:71:31,40:31:1099:40:1420:-106.724,0,-77.8463	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	0/1:79:40,39:40:1436:39:1389:-101.526,0,-105.756	0/1:158:68,90:68:2427:90:3201:-240.75,0,-171.123	0/1:252:128,124:128:4584:124:4426:-322.653,0,-336.865	1/1:132:0,132:0:0:132:4682:-421.541,-39.736,0	1/1:186:0,186:0:0:186:6612:-595.091,-55.9916,0	1/1:240:0,240:0:0:240:8584:-772.538,-72.2472,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:203:113,90:113:4031:90:3173:-224.626,0,-301.87	0/1:46:23,22:23:824:22:788:-57.3387,0,-60.5772	0/1:32:13,19:13:464:19:629:-47.2857,0,-32.4645	0/1:129:63,66:63:2228:66:2317:-169.957,0,-161.949	0/1:72:37,35:37:1313:35:1260:-92.0313,0,-96.7955	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:17:13,4:13:468:4:144:-8.19611,0,-37.3421	1/1:90:0,90:0:0:90:3209:-289.032,-27.0927,0	1/1:102:1,101:1:36:101:3606:-321.148,-27.1068,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:225:116,109:116:4151:109:3818:-276.083,0,-306.041	1/1:213:1,212:1:36:212:7470:-668.741,-60.5211,0	1/1:63:0,63:0:0:63:2195:-197.809,-18.9649,0	1/1:134:0,134:0:0:134:4780:-430.354,-40.338,0	1/1:226:0,226:0:0:226:7925:-713.281,-68.0328,0	0/1:165:119,46:119:4245:46:1648:-98.9386,0,-332.559	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:100:0,100:0:0:100:3507:-315.838,-30.103,0	1/1:74:0,74:0:0:74:2633:-237.216,-22.2762,0	1/1:26:0,26:0:0:26:902:-81.4903,-7.82678,0	1/1:155:0,155:0:0:155:5449:-490.54,-46.6597,0	0/1:54:28,26:28:1008:26:909:-65.8678,0,-74.7807	1/1:173:0,173:0:0:173:6176:-555.938,-52.0782,0	1/1:214:1,213:1:36:213:7585:-679.094,-60.8221,0	1/1:124:0,124:0:0:124:4399:-396.081,-37.3277,0	1/1:123:0,123:0:0:123:4393:-395.527,-37.0267,0	0/1:8:2,6:2:63:6:216:-17.3823,0,-3.57491	1/1:157:1,156:1:36:156:5535:-494.677,-43.6634,0	0/1:141:69,72:69:2467:72:2563:-188.475,0,-179.838	1/1:275:1,274:1:36:274:9654:-865.219,-79.185,0	1/1:111:0,111:0:0:111:3953:-355.962,-33.4143,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:75:37,38:37:1304:38:1355:-99.6725,0,-95.0814	1/1:119:0,119:0:0:119:4267:-384.208,-35.8226,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:84:42,42:42:1491:42:1492:-109.288,0,-109.197	1/1:58:1,57:1:36:57:2009:-177.484,-13.8615,0	0/1:28:12,15:12:432:15:528:-39.3637,0,-30.7336	0/1:73:29,44:29:1032:44:1568:-119.436,0,-71.2183	0/1:46:31,15:31:1116:15:525:-33.7307,0,-86.9043	1/1:132:0,132:0:0:132:4677:-420.822,-39.736,0	1/1:83:0,83:0:0:83:2930:-263.932,-24.9855,0
chr08	3249901	.	AACG	AACA	182946	PASS	AB=0.487811;ABP=8.19807;AC=152;AF=0.808511;AN=188;AO=8433;CIGAR=3M1X;DP=10541;DPB=10541;DPRA=0;EPP=18219.6;EPPR=4411.25;GTI=0;LEN=1;MEANALT=1.5;MQM=59.9143;MQMR=59.9318;NS=94;NUMALT=1;ODDS=4.42332;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=301387;QR=69353;RO=2054;RPL=8422;RPP=18219.6;RPPR=4411.25;RPR=11;RUN=1;SAF=8433;SAP=18315;SAR=0;SRF=2054;SRP=4463.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,51:0:0:51:1820:-163.725,-15.3525,0	1/1:264:0,264:0:0:264:9413:-847.136,-79.4719,0	0/1:129:72,57:72:2444:57:2014:-142.698,0,-181.382	1/1:183:0,183:0:0:183:6561:-590.564,-55.0885,0	0/1:86:40,46:40:1365:46:1639:-121.78,0,-97.2551	0/1:53:26,27:26:881:27:968:-71.4828,0,-63.6438	1/1:206:0,204:0:0:204:7313:-657.341,-61.4101,0	1/1:218:1,217:1:36:217:7734:-692.417,-62.0263,0	1/1:70:0,69:0:0:69:2467:-222.049,-20.7711,0	1/1:116:0,115:0:0:115:4124:-371.093,-34.6185,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:55:0,55:0:0:55:1962:-176.854,-16.5567,0	1/1:53:0,53:0:0:53:1887:-170.108,-15.9546,0	1/1:63:0,62:0:0:62:2218:-199.525,-18.6639,0	1/1:52:0,51:0:0:51:1828:-164.559,-15.3525,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:59:0,58:0:0:58:2058:-185.13,-17.4597,0	1/1:60:0,59:0:0:59:2107:-189.588,-17.7608,0	1/1:33:0,31:0:0:31:1103:-99.3046,-9.33193,0	1/1:253:0,252:0:0:252:8971:-807.164,-75.8596,0	1/1:191:0,190:0:0:190:6794:-609.071,-57.1957,0	0/1:168:116,51:116:3895:51:1823:-113.843,0,-299.893	1/1:107:0,105:0:0:105:3754:-337.783,-31.6082,0	0/1:119:57,61:57:1945:61:2183:-159.606,0,-139.171	1/1:93:0,93:0:0:93:3331:-300.007,-27.9958,0	0/1:327:174,153:174:5816:153:5458:-392.911,0,-424.956	0/1:234:102,132:102:3450:132:4710:-353.619,0,-240.279	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:330:0,330:0:0:330:11811:-1060.09,-99.3399,0	1/1:149:1,147:1:36:147:5261:-470.061,-41.2791,0	0/1:129:57,72:57:1959:72:2562:-191.996,0,-137.75	0/1:7:5,2:5:165:2:72:-4.72951,0,-13.0679	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:156:0,156:0:0:156:5574:-501.775,-46.9607,0	0/1:267:133,132:133:4489:132:4740:-345.605,0,-324.066	0/1:53:24,29:24:819:29:1044:-78.3202,0,-58.0678	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:164:68,94:68:2335:94:3350:-252.674,0,-161.365	0/1:36:13,23:13:454:23:824:-63.6462,0,-30.3548	0/1:213:115,97:115:3879:97:3472:-247.554,0,-285.269	0/1:74:31,43:31:1006:43:1539:-116.526,0,-68.5593	1/1:56:0,56:0:0:56:2003:-180.543,-16.8577,0	0/1:86:43,43:43:1483:43:1535:-112.554,0,-107.872	0/1:165:72,92:72:2437:92:3268:-244.693,0,-169.518	0/1:257:126,129:126:4307:129:4612:-337.103,0,-310.699	1/1:136:0,136:0:0:136:4861:-436.623,-40.9401,0	1/1:192:0,191:0:0:191:6852:-616.467,-57.4967,0	1/1:246:1,245:1:30:245:8736:-783.224,-71.0538,0	0/1:6:5,1:5:169:1:36:-1.79209,0,-13.7353	0/1:207:112,95:112:3796:95:3403:-244.115,0,-279.535	0/1:47:25,22:25:834:22:788:-57.0964,0,-61.2185	0/1:34:13,21:13:442:21:756:-58.1322,0,-29.8698	0/1:138:65,71:65:2156:71:2531:-186.78,0,-153.041	0/1:75:40,35:40:1347:35:1252:-89.3864,0,-98.9446	1/1:16:0,15:0:0:15:536:-48.3181,-4.51545,0	0/1:17:13,4:13:463:4:144:-8.19611,0,-36.8896	1/1:93:0,93:0:0:93:3310:-298.119,-27.9958,0	1/1:103:1,101:1:36:101:3609:-321.467,-27.4167,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:230:118,112:118:3992:112:4004:-291.312,0,-290.244	1/1:223:1,220:1:35:220:7890:-705.572,-63.3456,0	1/1:69:0,69:0:0:69:2462:-221.833,-20.7711,0	1/1:138:0,136:0:0:136:4880:-439.044,-40.9401,0	1/1:232:0,230:0:0:230:8225:-739.943,-69.2369,0	0/1:161:117,44:117:3895:44:1563:-92.4951,0,-302.292	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:105:0,105:0:0:105:3727:-335.629,-31.6082,0	1/1:76:0,75:0:0:75:2667:-239.995,-22.5773,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:163:0,163:0:0:163:5785:-520.769,-49.0679,0	0/1:59:32,27:32:1037:27:968:-69.6766,0,-75.8611	1/1:175:0,171:0:0:171:6132:-551.732,-51.4761,0	1/1:220:1,218:1:30:218:7799:-698.909,-63.2559,0	1/1:125:0,125:0:0:125:4454:-401.031,-37.6288,0	1/1:127:0,127:0:0:127:4533:-408.116,-38.2308,0	0/1:8:2,6:2:61:6:216:-17.3823,0,-3.38499	1/1:158:0,157:0:0:157:5635:-507.028,-47.2617,0	0/1:147:68,79:68:2311:79:2828:-210.507,0,-163.999	1/1:279:1,276:1:36:276:9877:-885.355,-80.1052,0	1/1:118:0,118:0:0:118:4207:-378.809,-35.5215,0	1/1:58:0,56:0:0:56:2016:-181.43,-16.8577,0	0/1:76:37,39:37:1267:39:1400:-103.421,0,-91.4496	1/1:122:0,120:0:0:120:4299:-386.775,-36.1236,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:89:46,43:46:1540:43:1532:-111.381,0,-112.093	1/1:60:1,59:1:35:59:2120:-187.57,-14.5632,0	0/1:28:13,15:13:440:15:531:-39.6931,0,-31.4944	0/1:75:30,44:30:1004:44:1562:-118.312,0,-68.1039	0/1:51:34,17:34:1124:17:612:-40.0575,0,-86.1042	1/1:143:0,143:0:0:143:5117:-460.672,-43.0473,0	1/1:82:0,81:0:0:81:2885:-259.654,-24.3834,0
chr08	3249981	.	GTTAA	ATTAG,ATTAA	239705	PASS	AB=0.482774,0.51401;ABP=14.2317,10.4334;AC=153,33;AF=0.822581,0.177419;AN=186;AO=9304,2250;CIGAR=1X3M1X,1X4M;DP=11591;DPB=11591.2;DPRA=0,1.27334;EPP=20206.4,4888.82;EPPR=9.52472;GTI=1;LEN=5,1;MEANALT=1.7957,2.39024;MQM=41.2229,55.1173;MQMR=60;NS=93;NUMALT=2;ODDS=1.30856;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=327994,80622;QR=107;RO=3;RPL=0,0;RPP=20206.4,4888.82;RPPR=9.52472;RPR=9304,2250;RUN=1,1;SAF=0,0;SAP=20206.4,4888.82;SAR=9304,2250;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:0,64,0:0:0:64,0:2270,0:-195.828,-19.2659,0,-195.828,-19.2659,-195.828	1/1:202:0,201,0:0:0:201,0:7080,0:-615.425,-60.507,0,-615.425,-60.507,-615.425	1/2:177:0,87,87:0:0:87,87:3080,3128:-496.43,-254.535,-228.345,-241.963,0,-215.773	1/1:353:0,352,1:0:0:352,1:12389,36:-1081.33,-105.963,0,-1078.4,-102.668,-1078.1	1/2:109:0,51,58:0:0:51,58:1818,2080:-310.394,-169.567,-154.215,-141.176,0,-123.716	1/2:71:0,30,40:0:0:30,40:1069,1431:-199.7,-116.186,-107.155,-83.6093,0,-71.5681	1/1:237:0,236,0:0:0:236,0:8332,0:-724.576,-71.0431,0,-724.576,-71.0431,-724.576	1/1:172:0,172,0:0:0:172,0:6052,0:-525.178,-51.7772,0,-525.178,-51.7772,-525.178	1/1:125:0,125,0:0:0:125,0:4400,0:-378.827,-37.6288,0,-378.827,-37.6288,-378.827	1/1:131:0,131,0:0:0:131,0:4625,0:-404.129,-39.4349,0,-404.129,-39.4349,-404.129	1/1:45:0,45,0:0:0:45,0:1592,0:-140.005,-13.5464,0,-140.005,-13.5464,-140.005	1/1:61:0,61,0:0:0:61,0:2144,0:-186.449,-18.3628,0,-186.449,-18.3628,-186.449	1/1:57:0,56,0:0:0:56,0:1984,0:-171.397,-16.8577,0,-171.397,-16.8577,-171.397	1/1:70:0,69,1:0:0:69,1:2438,36:-211.431,-20.7711,0,-208.497,-17.4789,-208.196	1/1:93:0,92,0:0:0:92,0:3225,0:-281.245,-27.6948,0,-281.245,-27.6948,-281.245	1/1:54:0,54,0:0:0:54,0:1909,0:-165.562,-16.2556,0,-165.562,-16.2556,-165.562	1/1:75:0,75,0:0:0:75,0:2652,0:-231.735,-22.5773,0,-231.735,-22.5773,-231.735	1/1:59:0,58,1:0:0:58,1:2071,36:-177.946,-17.4597,0,-175.008,-14.1625,-174.707	1/1:44:0,44,0:0:0:44,0:1562,0:-134.279,-13.2453,0,-134.279,-13.2453,-134.279	1/1:367:0,367,0:0:0:367,0:12907,0:-1125.33,-110.478,0,-1125.33,-110.478,-1125.33	1/1:224:0,222,0:0:0:222,0:7847,0:-674.038,-66.8287,0,-674.038,-66.8287,-674.038	1/2:207:0,53,154:0:0:53,154:1887,5528:-601.84,-450.961,-435.006,-151.231,0,-104.873	1/1:131:0,131,0:0:0:131,0:4631,0:-404.092,-39.4349,0,-404.092,-39.4349,-404.092	1/2:177:0,106,69:0:0:106,69:3722,2484:-490.967,-202.05,-170.141,-288.985,0,-268.214	1/1:101:1,100,0:1:35:100,0:3562,0:-302.467,-26.9054,0,-302.768,-30.103,-305.616	1/2:439:0,217,219:0:0:217,219:7637,7832:-1246.71,-637.856,-572.532,-608.923,0,-542.998	1/2:191:0,102,89:0:0:102,89:3584,3187:-536.659,-259.619,-228.914,-277.387,0,-250.596	1/1:42:0,42,0:0:0:42,0:1487,0:-128.504,-12.6433,0,-128.504,-12.6433,-128.504	1/1:414:0,411,0:0:0:411,0:14460,0:-1277.43,-123.723,0,-1277.43,-123.723,-1277.43	1/1:175:0,171,4:0:0:171,4:5991,144:-518.079,-51.4761,0,-506.347,-39.3855,-505.143	1/2:192:0,79,113:0:0:79,113:2758,4064:-548.324,-331.295,-307.514,-217.376,0,-183.36	1/1:5:0,5,0:0:0:5,0:173,0:-15.3666,-1.50515,0,-15.3666,-1.50515,-15.3666	1/1:10:0,10,0:0:0:10,0:353,0:-30.9322,-3.0103,0,-30.9322,-3.0103,-30.9322	1/1:1:0,1,0:0:0:1,0:35,0:-3.4027,-0.30103,0,-3.4027,-0.30103,-3.4027	1/1:14:0,14,0:0:0:14,0:495,0:-42.5404,-4.21442,0,-42.5404,-4.21442,-42.5404	.:.:.:.:.:.:.:.	1/1:221:0,221,0:0:0:221,0:7779,0:-686.147,-66.5276,0,-686.147,-66.5276,-686.147	1/2:244:0,132,111:0:0:132,111:4615,3988:-681.938,-324.215,-284.479,-357.725,0,-324.311	1/2:55:0,33,22:0:0:33,22:1172,792:-156.698,-64.9044,-54.9704,-92.1464,0,-85.5237	1/1:3:0,3,0:0:0:3,0:104,0:-8.88163,-0.90309,0,-8.88163,-0.90309,-8.88163	1/2:177:0,78,99:0:0:78,99:2751,3544:-503.676,-288.801,-265.32,-215.223,0,-185.421	1/2:32:0,17,15:0:0:17,15:600,536:-90.2426,-43.9892,-38.8717,-46.6004,0,-42.0849	1/2:194:0,104,89:0:0:104,89:3638,3204:-543.113,-260.887,-229.58,-282.228,0,-255.437	1/2:53:0,26,27:0:0:26,27:925,968:-152.41,-79.2444,-71.4176,-73.518,0,-65.3902	1/1:69:0,69,0:0:0:69,0:2411,0:-211.146,-20.7711,0,-211.146,-20.7711,-211.146	1/2:190:0,111,79:0:0:111,79:3914,2840:-544.305,-231.776,-198.362,-312.883,0,-289.101	1/2:161:0,88,72:0:0:88,72:3081,2584:-451.3,-210.076,-183.585,-241.275,0,-219.601	1/2:253:0,130,123:0:0:130,123:4551,4381:-714.168,-356.784,-317.65,-357.731,0,-320.705	1/1:142:0,142,0:0:0:142,0:5044,0:-439.667,-42.7463,0,-439.667,-42.7463,-439.667	1/1:167:0,167,0:0:0:167,0:5898,0:-515.285,-50.272,0,-515.285,-50.272,-515.285	1/1:273:0,273,0:0:0:273,0:9658,0:-848.623,-82.1812,0,-848.623,-82.1812,-848.623	1/2:10:0,6,4:0:0:6,4:211,144:-28.4733,-12.0999,-10.2937,-16.724,0,-15.5198	1/2:226:0,99,126:0:0:99,126:3509,4516:-642.154,-367.298,-337.496,-274.937,0,-237.007	1/2:41:0,17,24:0:0:17,24:609,860:-119.204,-70.4633,-65.3457,-49.0948,0,-41.8701	1/2:8:0,1,7:0:0:1,7:36,243:-22.8965,-20.0647,-19.7636,-3.17967,0,-1.07246	1/2:143:0,74,69:0:0:74,69:2572,2458:-397.825,-199.857,-177.581,-198.31,0,-177.539	1/2:46:0,19,27:0:0:19,27:678,939:-129.604,-76.612,-70.8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chr08	3274262	.	G	A	142283	PASS	AB=0.479566;ABP=16.0554;AC=153;AF=0.81383;AN=188;AO=6642;CIGAR=1X;DP=8529;DPB=8529;DPRA=0;EPP=14425.9;EPPR=4098.41;GTI=2;LEN=1;MEANALT=1.01064;MQM=59.9905;MQMR=60;NS=94;NUMALT=1;ODDS=0.595365;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237679;QR=67217;RO=1886;RPL=0;RPP=14425.9;RPPR=4098.41;RPR=6642;RUN=1;SAF=6642;SAP=14425.9;SAR=0;SRF=1886;SRP=4098.41;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:65:1,64:1:36:64:2260:-200.003,-15.9687,0	1/1:98:0,98:0:0:98:3491:-314.399,-29.5009,0	0/1:174:86,88:86:3038:88:3164:-232.604,0,-221.27	1/1:261:0,261:0:0:261:9328:-839.48,-78.5688,0	0/1:51:17,34:17:597:34:1224:-95.1145,0,-38.7036	0/1:46:24,22:24:856:22:784:-57.0365,0,-63.5137	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	1/1:129:0,129:0:0:129:4595:-413.712,-38.8329,0	1/1:87:0,87:0:0:87:3105:-279.676,-26.1896,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:22:0,22:0:0:22:780:-70.5225,-6.62266,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:42:0,42:0:0:42:1504:-135.654,-12.6433,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:28:1,27:1:36:27:957:-82.8456,-4.83057,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:218:0,218:0:0:218:7806:-702.296,-65.6245,0	1/1:184:0,184:0:0:184:6570:-591.38,-55.3895,0	0/1:147:97,50:97:3461:50:1796:-117.671,0,-267.45	1/1:223:0,223:0:0:223:7956:-716.062,-67.1297,0	0/1:59:29,30:29:1002:30:1080:-79.7525,0,-72.7254	1/1:86:0,86:0:0:86:3081:-277.517,-25.8886,0	0/1:374:220,154:220:7840:154:5509:-383.349,0,-593.04	0/1:239:109,130:109:3885:130:4657:-347.343,0,-277.898	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:306:0,306:0:0:306:10984:-988.451,-92.1152,0	1/1:163:8,155:8:288:155:5564:-474.614,-22.8005,0	0/1:109:52,57:52:1845:57:2018:-149.077,0,-133.516	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:155:0,155:0:0:155:5549:-499.532,-46.6597,0	0/1:197:107,90:107:3837:90:3226:-231.259,0,-286.221	0/1:26:16,10:16:561:10:360:-24.9175,0,-42.9903	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:122:64,58:64:2266:58:2076:-150.384,0,-167.474	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:222:127,95:127:4529:95:3385:-238.031,0,-340.949	0/1:30:12,18:12:428:18:648:-49.621,0,-29.8279	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	0/1:125:59,66:59:2105:66:2368:-175.749,0,-152.089	0/1:124:53,71:53:1889:71:2526:-190.262,0,-132.959	0/1:201:117,84:117:4170:84:3020:-211.523,0,-314.973	1/1:112:1,111:1:36:111:3988:-355.51,-30.1171,0	1/1:129:0,129:0:0:129:4598:-413.983,-38.8329,0	1/1:44:0,44:0:0:44:1554:-140.148,-13.2453,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:123:57,66:57:2048:66:2349:-174.641,0,-147.565	0/1:51:18,33:18:633:33:1177:-90.8842,0,-41.9425	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:136:60,75:60:2141:75:2673:-199.879,0,-152.02	0/1:74:38,36:38:1364:36:1277:-92.9549,0,-100.784	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	1/1:50:0,50:0:0:50:1781:-160.571,-15.0515,0	1/1:82:1,81:1:36:81:2906:-258.176,-21.0862,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:112:50,62:50:1781:62:2200:-164.548,0,-126.855	1/1:191:3,188:3:108:188:6745:-597.045,-47.4216,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:75:0,75:0:0:75:2658:-239.464,-22.5773,0	1/1:200:0,200:0:0:200:7161:-644.544,-60.206,0	0/1:337:213,124:213:7614:124:4456:-299.761,0,-583.848	1/1:18:0,18:0:0:18:629:-56.9338,-5.41854,0	1/1:62:0,62:0:0:62:2203:-198.534,-18.6639,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:135:0,135:0:0:135:4826:-434.492,-40.6391,0	0/1:106:61,45:61:2143:45:1620:-114.181,0,-161.224	1/1:99:0,99:0:0:99:3552:-319.887,-29.802,0	1/1:159:0,159:0:0:159:5671:-510.506,-47.8638,0	1/1:101:0,101:0:0:101:3598:-324.024,-30.404,0	1/1:93:0,93:0:0:93:3344:-301.176,-27.9958,0	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	1/1:93:0,93:0:0:93:3329:-299.826,-27.9958,0	0/1:111:48,63:48:1724:63:2245:-168.897,0,-122.031	1/1:170:0,170:0:0:170:6093:-548.469,-51.1751,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:41:16,25:16:576:25:895:-68.528,0,-39.8328	1/1:109:0,109:0:0:109:3920:-352.991,-32.8123,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:43:17,26:17:608:26:936:-71.6152,0,-42.1077	1/1:60:0,60:0:0:60:2145:-193.316,-18.0618,0	0/1:24:11,13:11:392:13:468:-35.2349,0,-28.3953	0/1:61:25,36:25:900:36:1292:-98.2209,0,-62.9582	0/1:60:31,29:31:1116:29:1044:-76.213,0,-82.6899	1/1:33:0,33:0:0:33:1179:-106.418,-9.93399,0	1/1:72:0,72:0:0:72:2592:-233.528,-21.6742,0
chr08	3293901	.	T	C	176415	PASS	AB=0.514904;ABP=10.5836;AC=152;AF=0.808511;AN=188;AO=8079;CIGAR=1X;DP=9995;DPB=9995;DPRA=0;EPP=17209.2;EPPR=4100.74;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9667;MQMR=60;NS=94;NUMALT=1;ODDS=3.24521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288545;QR=68401;RO=1911;RPL=39;RPP=17209.2;RPPR=4100.74;RPR=8040;RUN=1;SAF=8079;SAP=17546.3;SAR=0;SRF=1911;SRP=4152.69;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:134:0,134:0:0:134:4803:-432.424,-40.338,0	0/1:172:80,92:80:2851:92:3285:-244.091,0,-205.051	1/1:374:0,374:0:0:374:13384:-1204.35,-112.585,0	0/1:109:59,50:59:2112:50:1772:-126.95,0,-157.537	0/1:117:60,57:60:2148:57:2025:-147.143,0,-158.367	1/1:122:0,122:0:0:122:4357:-392.305,-36.7257,0	1/1:230:0,230:0:0:230:8190:-736.886,-69.2369,0	1/1:129:0,129:0:0:129:4582:-412.547,-38.8329,0	1/1:128:1,127:1:36:127:4560:-406.966,-34.9336,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:79:0,79:0:0:79:2827:-254.668,-23.7814,0	1/1:67:0,67:0:0:67:2397:-215.987,-20.169,0	1/1:80:0,80:0:0:80:2859:-257.547,-24.0824,0	1/1:72:0,72:0:0:72:2561:-230.74,-21.6742,0	1/1:62:0,62:0:0:62:2199:-198.175,-18.6639,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:79:1,78:1:36:78:2760:-245.043,-20.1831,0	1/1:28:0,28:0:0:28:984:-88.8707,-8.42884,0	1/1:84:0,83:0:0:83:2969:-267.081,-24.9855,0	1/1:135:0,135:0:0:135:4836:-435.394,-40.6391,0	0/1:133:81,52:81:2908:52:1855:-127.192,0,-221.918	1/1:97:0,96:0:0:96:3421:-307.745,-28.8989,0	0/1:63:32,31:32:1144:31:1108:-81.0661,0,-84.3046	1/1:87:0,87:0:0:87:3112:-280.307,-26.1896,0	0/1:310:157,153:157:5602:153:5484:-400.367,0,-410.981	0/1:181:83,97:83:2980:97:3445:-255.715,0,-213.887	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:216:0,216:0:0:216:7756:-698.065,-65.0225,0	1/1:147:1,146:1:36:146:5157:-460.67,-40.6531,0	0/1:107:33,74:33:1180:74:2656:-207.076,0,-74.2978	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:218:0,218:0:0:218:7828:-704.545,-65.6245,0	0/1:226:113,113:113:4028:113:4050:-296.652,0,-294.675	0/1:58:20,38:20:720:38:1356:-104.881,0,-47.669	1/1:2:0,2:0:0:2:62:-5.88894,-0.60206,0	0/1:168:76,92:76:2736:92:3285:-245.295,0,-195.909	0/1:34:15,19:15:536:19:684:-51.6553,0,-38.3398	0/1:122:70,52:70:2508:52:1853:-130.322,0,-189.247	0/1:105:46,59:46:1656:59:2092:-156.939,0,-117.72	1/1:73:0,73:0:0:73:2576:-231.98,-21.9752,0	0/1:87:34,53:34:1220:53:1884:-143.643,0,-83.9172	0/1:262:122,140:122:4376:140:4996:-370.685,0,-315.143	0/1:230:110,120:110:3948:120:4300:-317.94,0,-286.274	1/1:99:0,99:0:0:99:3526:-317.547,-29.802,0	1/1:160:1,159:1:32:159:5649:-505.331,-44.9655,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:8:3,5:3:93:5:180:-14.1438,0,-6.26849	0/1:197:85,112:85:3033:112:3987:-299.718,0,-213.896	0/1:38:17,21:17:597:21:752:-56.5671,0,-42.617	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:155:72,83:72:2592:83:2964:-220.333,0,-186.868	0/1:68:35,33:35:1240:33:1180:-86.038,0,-91.4344	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:15:4,11:4:144:11:388:-30.741,0,-8.79817	1/1:117:0,117:0:0:117:4177:-376.006,-35.2205,0	1/1:124:0,124:0:0:124:4443:-400.04,-37.3277,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:214:106,108:106:3812:108:3849:-282.185,0,-278.855	1/1:216:2,214:2:72:214:7644:-681.161,-58.1858,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:139:0,139:0:0:139:4973:-447.712,-41.8432,0	1/1:202:0,202:0:0:202:7201:-648.147,-60.8081,0	0/1:81:49,32:49:1752:32:1126:-77.2626,0,-133.581	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:67:0,67:0:0:67:2384:-214.816,-20.169,0	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0	1/1:14:0,13:0:0:13:460:-41.376,-3.91339,0	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	0/1:98:36,62:36:1273:62:2218:-170.384,0,-85.37	1/1:141:0,141:0:0:141:5015:-451.498,-42.4452,0	1/1:184:1,183:1:36:183:6508:-582.204,-51.7912,0	1/1:173:0,173:0:0:173:6215:-559.443,-52.0782,0	1/1:154:0,154:0:0:154:5526:-497.463,-46.3586,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:139:0,139:0:0:139:4960:-446.54,-41.8432,0	0/1:104:61,43:61:2180:43:1532:-106.864,0,-165.159	1/1:174:0,174:0:0:174:6215:-559.445,-52.3792,0	1/1:115:1,114:1:36:114:4054:-361.449,-31.0202,0	1/1:97:0,97:0:0:97:3479:-313.321,-29.1999,0	0/1:97:56,41:56:2004:41:1463:-102.765,0,-151.434	1/1:156:0,156:0:0:156:5566:-501.066,-46.9607,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:134:65,69:65:2328:69:2484:-183.475,0,-169.442	1/1:85:1,84:1:36:84:3008:-267.353,-21.9893,0	0/1:37:15,22:15:540:22:792:-60.4676,0,-37.7984	0/1:47:24,22:24:864:22:788:-57.0377,0,-63.8754	0/1:119:71,48:71:2544:48:1716:-118.903,0,-193.388	1/1:158:0,158:0:0:158:5648:-508.441,-47.5627,0	1/1:119:0,119:0:0:119:4261:-383.666,-35.8226,0
chr08	3294986	.	C	G	28167.4	PASS	AB=0.507642;ABP=4.70284;AC=35;AF=0.18617;AN=188;AO=1701;CIGAR=1X;DP=8153;DPB=8153;DPRA=1.2619;EPP=3696.68;EPPR=13993.8;GTI=1;LEN=1;MEANALT=1.075;MQM=59.9953;MQMR=59.9899;NS=94;NUMALT=1;ODDS=1.58083;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60210;QR=228632;RO=6447;RPL=1700;RPP=3688;RPPR=13985.1;RPR=1;RUN=1;SAF=1700;SAP=3688;SAR=1;SRF=6446;SRP=13993.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:72:72,0:72:2509:0:0:0,-21.6742,-226.058	0/0:72:72,0:72:2541:0:0:0,-21.6742,-228.938	0/1:177:70,107:70:2499:107:3768:-286.038,0,-171.88	0/0:114:114,0:114:4004:0:0:0,-34.3174,-360.552	0/1:86:45,40:45:1612:40:1432:-103.23,0,-119.423	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/0:165:165,0:165:5838:0:0:0,-49.6699,-525.534	0/0:96:95,0:95:3369:0:0:0,-28.5978,-303.067	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.701	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/0:118:118,0:118:4182:0:0:0,-35.5215,-376.565	0/0:69:69,0:69:2443:0:0:0,-20.7711,-220.123	0/0:68:68,0:68:2398:0:0:0,-20.47,-216.077	0/0:68:68,0:68:2381:0:0:0,-20.47,-214.545	0/0:76:75,1:75:2658:1:36:0,-19.28,-235.868	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.575	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:38:38,0:38:1337:0:0:0,-11.4391,-120.628	0/0:126:126,0:126:4503:0:0:0,-37.9298,-405.439	0/0:174:174,0:174:6161:0:0:0,-52.3792,-554.557	0/1:132:53,79:53:1875:79:2794:-211.964,0,-129.292	0/0:101:101,0:101:3594:0:0:0,-30.404,-323.667	0/1:54:29,25:29:1029:25:873:-62.6305,0,-76.6655	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.451	0/1:213:118,95:118:4178:95:3337:-236.427,0,-312.081	0/1:327:181,145:181:6426:145:5137:-363.979,0,-479.935	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/0:156:154,1:154:5455:1:36:0,-43.3463,-487.558	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/1:104:60,44:60:2152:44:1568:-110.105,0,-162.64	0/1:15:6,9:6:212:9:324:-24.9904,0,-14.9093	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:191:191,0:191:6759:0:0:0,-57.4967,-608.391	0/1:134:77,57:77:2733:57:2040:-143.534,0,-205.874	0/1:48:27,21:27:959:21:743:-52.7439,0,-72.176	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:46:21,25:21:756:25:883:-65.9401,0,-54.5198	0/1:40:18,22:18:635:22:783:-58.7517,0,-45.4358	0/1:222:103,119:103:3658:119:4223:-313.424,0,-262.597	0/1:58:33,25:33:1180:25:846:-58.9881,0,-89.0483	0/0:70:70,0:70:2450:0:0:0,-21.0721,-220.753	0/1:169:78,91:78:2762:91:3242:-241.127,0,-197.948	0/1:140:68,72:68:2395:72:2529:-185.717,0,-173.661	0/1:131:61,70:61:2192:70:2491:-185.008,0,-158.11	0/0:67:66,1:66:2331:1:36:0,-16.5707,-206.449	0/0:94:94,0:94:3344:0:0:0,-28.2968,-301.176	0/0:56:56,0:56:1977:0:0:0,-16.8577,-178.203	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:113:52,61:52:1844:61:2180:-162.45,0,-132.221	0/1:38:11,27:11:392:27:968:-75.9982,0,-24.1809	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:106:70,36:70:2443:36:1268:-82.5116,0,-187.985	0/1:24:6,18:6:216:18:635:-50.2529,0,-12.5658	0/0:14:14,0:14:486:0:0:0,-4.21442,-44.068	0/1:13:7,6:7:243:6:207:-15.0535,0,-18.2941	0/0:83:83,0:83:2954:0:0:0,-24.9855,-266.093	0/0:112:112,0:112:3978:0:0:0,-33.7154,-358.212	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:164:84,80:84:2971:80:2828:-205.389,0,-218.253	0/0:130:129,1:129:4596:1:36:0,-35.5356,-410.206	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:104:104,0:104:3688:0:0:0,-31.3071,-332.121	0/0:173:170,3:170:6078:3:108:0,-42.003,-537.047	0/1:155:66,89:66:2351:89:3172:-239.043,0,-165.189	0/0:45:45,0:45:1595:0:0:0,-13.5463,-143.84	0/0:60:60,0:60:2130:0:0:0,-18.0618,-191.967	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:93:93,0:93:3323:0:0:0,-27.9958,-299.288	0/1:92:50,42:50:1766:42:1474:-105.258,0,-131.525	0/0:132:131,0:131:4638:0:0:0,-39.4349,-417.225	0/0:135:135,0:135:4777:0:0:0,-40.639,-430.086	0/0:130:130,0:130:4636:0:0:0,-39.1339,-417.402	0/0:106:106,0:106:3747:0:0:0,-31.9092,-337.431	0/1:29:7,22:7:248:22:768:-60.7078,0,-13.9343	0/0:134:134,0:134:4748:0:0:0,-40.338,-427.478	0/1:130:70,60:70:2500:60:2148:-154.454,0,-186.119	0/0:156:156,0:156:5553:0:0:0,-46.9607,-499.893	0/0:62:62,0:62:2186:0:0:0,-18.6639,-197.005	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:38:15,23:15:536:23:803:-61.1492,0,-37.1357	0/0:151:151,0:151:5371:0:0:0,-45.4555,-483.523	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:74:37,37:37:1315:37:1279:-93.1316,0,-96.3748	0/0:80:80,0:80:2822:0:0:0,-24.0824,-254.22	0/1:34:14,20:14:496:20:702:-53.2675,0,-34.7392	0/1:119:59,60:59:2056:60:2131:-156.235,0,-149.487	0/1:88:33,55:33:1157:55:1958:-150.003,0,-77.9436	0/0:173:173,0:173:6052:0:0:0,-52.0782,-544.788	0/0:109:109,0:109:3890:0:0:0,-32.8123,-350.294
chr08	3294995	.	A	G	346330	PASS	AB=0.467957;ABP=60.6236;AC=152;AF=0.808511;AN=188;AO=12736;CIGAR=1X;DP=16209;DPB=16209;DPRA=0;EPP=27658.9;EPPR=7542.36;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9908;MQMR=59.9796;NS=94;NUMALT=1;ODDS=3.7658;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=450921;QR=123777;RO=3472;RPL=6143;RPP=37.5363;RPPR=3.26047;RPR=6593;RUN=1;SAF=6143;SAP=37.5363;SAR=6593;SRF=1746;SRP=3.26047;SRR=1726;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:92:0,92:0:0:92:3248:-292.545,-27.6948,0	1/1:219:0,219:0:0:219:7741:-696.729,-65.9256,0	0/1:246:136,110:136:4880:110:3915:-278.491,0,-365.29	1/1:243:0,243:0:0:243:8633:-776.972,-73.1503,0	0/1:129:58,71:58:2069:71:2483:-184.89,0,-147.646	0/1:73:37,36:37:1320:36:1279:-93.4373,0,-97.1268	1/1:105:0,105:0:0:105:3730:-335.899,-31.6082,0	1/1:302:0,302:0:0:302:10712:-963.996,-90.9111,0	1/1:129:0,129:0:0:129:4592:-413.448,-38.8329,0	1/1:177:0,177:0:0:177:6243:-561.969,-53.2823,0	1/1:88:0,88:0:0:88:3073:-276.8,-26.4906,0	1/1:177:0,177:0:0:177:6257:-563.232,-53.2823,0	1/1:131:0,131:0:0:131:4675:-420.912,-39.4349,0	1/1:172:1,171:1:36:171:6093:-545.019,-48.3227,0	1/1:131:2,129:2:68:129:4530:-401.651,-33.2167,0	1/1:148:1,147:1:36:147:5183:-463.017,-40.9542,0	1/1:140:0,140:0:0:140:4946:-445.293,-42.1442,0	1/1:95:0,95:0:0:95:3382:-304.596,-28.5979,0	1/1:84:0,84:0:0:84:2999:-270.142,-25.2865,0	1/1:292:0,292:0:0:292:10360:-932.328,-87.9008,0	1/1:251:1,250:1:36:250:8803:-788.67,-71.9603,0	0/1:187:112,75:112:3995:75:2663:-183.624,0,-303.448	1/1:130:0,130:0:0:130:4616:-415.605,-39.1339,0	0/1:138:62,76:62:2178:76:2694:-201.162,0,-154.741	1/1:127:1,126:1:36:126:4448:-396.894,-34.6325,0	0/1:536:286,250:286:10200:250:8859:-635.95,0,-756.568	0/1:465:226,239:226:8095:239:8445:-620.081,0,-588.581	1/1:88:0,88:0:0:88:3118:-280.848,-26.4906,0	1/1:304:2,302:2:72:302:10684:-954.642,-84.6764,0	1/1:289:8,281:8:288:281:9934:-867.747,-60.7303,0	0/1:203:99,104:99:3498:104:3694:-271.555,0,-253.922	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:28:0,28:0:0:28:990:-89.4139,-8.42884,0	1/1:382:0,382:0:0:382:13545:-1218.85,-114.993,0	0/1:406:209,197:209:7436:197:6887:-497.69,0,-547.067	0/1:113:55,58:55:1964:58:2076:-153.094,0,-143.019	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	0/1:144:78,66:78:2770:66:2328:-166.43,0,-206.19	0/1:60:32,28:32:1135:28:987:-71.0812,0,-84.3963	0/1:315:178,137:178:6315:137:4831:-340.125,0,-473.619	0/1:162:81,81:81:2860:81:2880:-210.668,0,-208.87	1/1:146:0,146:0:0:146:5175:-465.893,-43.9504,0	0/1:264:135,129:135:4819:129:4543:-329.57,0,-354.394	0/1:291:156,135:156:5562:135:4809:-345.366,0,-413.106	0/1:231:128,103:128:4566:103:3628:-257.189,0,-341.568	1/1:139:1,138:1:36:138:4892:-436.837,-38.2449,0	1/1:237:0,237:0:0:237:8404:-756.334,-71.3441,0	1/1:142:0,142:0:0:142:5027:-452.58,-42.7463,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:222:132,90:132:4732:90:3224:-223.553,0,-359.209	0/1:105:65,40:65:2319:40:1411:-95.6784,0,-177.362	0/1:11:4,7:4:140:7:244:-18.9881,0,-9.63325	0/1:205:84,121:84:3008:121:4262:-322.051,0,-209.24	0/1:46:29,17:29:1040:17:604:-40.8432,0,-80.067	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:24:10,14:10:356:14:481:-36.3895,0,-25.1565	1/1:125:0,125:0:0:125:4418:-397.794,-37.6288,0	1/1:246:3,243:3:108:243:8612:-765.011,-63.9782,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:458:228,230:228:8106:230:8156:-596.173,0,-591.689	1/1:310:1,309:1:36:309:10946:-981.45,-89.721,0	1/1:126:0,126:0:0:126:4463:-401.842,-37.9298,0	1/1:175:0,175:0:0:175:6177:-556.024,-52.6803,0	1/1:337:3,334:3:108:334:11756:-1047.84,-91.3719,0	0/1:266:170,96:170:6052:96:3404:-226.503,0,-464.711	1/1:76:0,76:0:0:76:2703:-243.514,-22.8783,0	1/1:91:0,91:0:0:91:3238:-291.642,-27.3937,0	1/1:150:0,149:0:0:149:5248:-472.103,-44.8535,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:132:2,130:2:72:130:4572:-404.813,-32.8992,0	0/1:130:67,63:67:2404:63:2244:-163.09,0,-177.483	1/1:287:1,286:1:36:286:10124:-907.504,-82.7973,0	1/1:283:0,283:0:0:283:10057:-905.072,-85.1915,0	1/1:257:0,257:0:0:257:9152:-823.658,-77.3647,0	1/1:231:1,230:1:36:230:8178:-732.442,-65.9397,0	0/1:36:26,10:26:928:10:356:-21.5442,0,-73.0012	1/1:214:1,213:1:36:213:7505:-671.903,-60.8221,0	0/1:214:114,100:114:4075:100:3549:-255.199,0,-302.516	1/1:328:2,326:2:72:326:11511:-1029.04,-91.9011,0	1/1:187:1,186:1:36:186:6550:-585.992,-52.6943,0	1/1:133:0,133:0:0:133:4725:-425.409,-40.037,0	0/1:122:63,59:63:2256:59:2088:-151.462,0,-166.577	1/1:288:0,288:0:0:288:10177:-915.872,-86.6966,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	0/1:145:72,73:72:2563:73:2587:-189.43,0,-187.271	1/1:137:0,137:0:0:137:4868:-438.239,-41.2411,0	0/1:75:42,33:42:1490:33:1176:-83.5705,0,-111.816	0/1:220:120,100:120:4296:100:3538:-252.402,0,-320.591	0/1:183:125,58:125:4450:58:2063:-130.852,0,-345.583	1/1:289:3,286:3:108:286:10129:-901.476,-76.9225,0	1/1:206:0,206:0:0:206:7328:-659.572,-62.0122,0
chr08	3295025	.	C	T	40474.3	PASS	AB=0.547408;ABP=64.7778;AC=35;AF=0.188172;AN=186;AO=1757;CIGAR=1X;DP=8233;DPB=8233;DPRA=1.26337;EPP=25.5345;EPPR=48.0106;GTI=1;LEN=1;MEANALT=1.0625;MQM=59.9698;MQMR=59.991;NS=93;NUMALT=1;ODDS=0.524486;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62898;QR=229515;RO=6464;RPL=811;RPP=25.5345;RPPR=48.0106;RPR=946;RUN=1;SAF=0;SAP=3818.29;SAR=1757;SRF=0;SRP=14039.4;SRR=6464;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/0:150:150,0:150:5313:0:0:0,-45.1545,-478.309	0/1:74:41,33:41:1459:33:1177:-83.9605,0,-109.329	0/0:137:137,0:137:4867:0:0:0,-41.2411,-438.187	0/1:50:29,21:29:1031:21:752:-52.9548,0,-78.0511	0/1:62:33,29:33:1180:29:1040:-75.2505,0,-87.8442	0/0:70:70,0:70:2466:0:0:0,-21.0721,-222.195	0/0:142:140,0:140:4977:0:0:0,-42.1442,-447.721	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:112:111,0:111:3963:0:0:0,-33.4143,-356.502	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/0:68:68,0:68:2346:0:0:0,-20.47,-211.396	0/0:66:66,0:66:2327:0:0:0,-19.868,-209.688	0/0:110:109,1:109:3867:1:36:0,-29.6588,-344.771	0/0:62:61,1:61:2171:1:36:0,-15.3177,-192.31	0/0:74:74,0:74:2629:0:0:0,-22.2762,-236.856	0/0:107:107,0:107:3788:0:0:0,-32.2102,-341.12	0/0:76:76,0:76:2677:0:0:0,-22.8783,-241.173	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:168:167,1:167:5971:1:36:0,-46.9748,-533.899	0/0:86:86,0:86:3061:0:0:0,-25.8886,-275.718	0/1:54:24,30:24:856:30:1080:-81.2576,0,-61.1055	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:84:47,37:47:1659:37:1320:-93.8154,0,-124.31	0/0:57:56,1:56:1980:1:36:0,-13.5604,-174.874	0/1:321:133,188:133:4748:188:6709:-507.255,0,-330.849	0/1:146:64,82:64:2264:82:2917:-218.808,0,-160.073	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:148:148,0:148:5263:0:0:0,-44.5524,-473.807	0/0:214:203,11:203:7204:11:396:0,-28.4377,-612.438	0/1:99:45,54:45:1587:54:1944:-145.434,0,-113.318	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/0:198:198,0:198:7040:0:0:0,-59.6039,-633.666	0/1:275:118,157:118:4187:157:5595:-420.889,0,-294.229	0/1:69:33,36:33:1171:36:1296:-96.1729,0,-84.9256	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:100:46,54:46:1648:54:1929:-143.783,0,-118.506	0/1:21:10,11:10:351:11:396:-29.6611,0,-25.605	0/1:92:39,53:39:1384:53:1908:-144.303,0,-97.1641	0/1:105:50,55:50:1746:55:1972:-146.147,0,-125.812	0/0:76:76,0:76:2687:0:0:0,-22.8783,-242.073	0/1:100:54,46:54:1897:46:1648:-118.506,0,-140.902	0/1:159:75,84:75:2671:84:3003:-222.636,0,-192.772	0/1:101:44,57:44:1571:57:2044:-153.828,0,-111.277	0/0:77:75,0:75:2684:0:0:0,-22.5772,-241.445	0/0:146:146,0:146:5214:0:0:0,-43.9504,-469.362	0/0:90:90,0:90:3191:0:0:0,-27.0927,-287.415	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:111:42,67:42:1495:67:2400:-183.085,0,-101.672	0/1:67:30,37:30:1064:37:1324:-99.2931,0,-75.9027	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/1:103:49,54:49:1748:54:1940:-143.87,0,-126.598	0/1:22:11,11:11:388:11:392:-28.9974,0,-28.6347	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:129:127,2:127:4514:2:72:0,-31.9961,-399.591	.:.:.:.:.:.:.:.	0/1:294:145,148:145:5147:148:5309:-389.53,0,-374.96	0/0:187:186,0:186:6617:0:0:0,-55.9916,-595.248	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.155	0/0:71:71,0:71:2510:0:0:0,-21.3731,-226.066	0/0:171:170,0:170:6053:0:0:0,-51.1751,-544.505	0/1:110:32,78:32:1148:78:2800:-219.126,0,-70.5165	0/0:30:30,0:30:1058:0:0:0,-9.0309,-95.5296	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:107:106,1:106:3746:1:36:0,-28.6119,-333.745	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:39:37,2:37:1307:2:72:0,-4.90345,-111.094	0/1:39:17,22:17:608:22:792:-59.8655,0,-43.3119	0/0:163:161,1:161:5709:1:36:0,-45.5284,-510.334	0/0:149:149,0:149:5318:0:0:0,-44.8535,-478.755	0/0:125:124,0:124:4409:0:0:0,-37.3277,-396.624	0/0:131:130,1:130:4609:1:36:0,-35.8367,-411.376	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	0/0:82:81,1:81:2904:1:36:0,-21.0862,-257.997	0/1:88:34,54:34:1203:54:1944:-148.745,0,-82.0844	0/0:176:175,1:175:6224:1:36:0,-49.383,-556.66	0/0:124:123,1:123:4369:1:36:0,-33.7294,-389.785	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.965	0/1:80:41,39:41:1472:39:1404:-102.577,0,-108.694	0/0:145:145,0:145:5104:0:0:0,-43.6493,-459.508	0/0:44:44,0:44:1540:0:0:0,-13.2453,-138.888	0/1:73:39,34:39:1377:34:1220:-88.1316,0,-102.251	0/0:61:61,0:61:2149:0:0:0,-18.3628,-193.676	0/1:38:18,20:18:629:20:720:-53.6896,0,-45.4946	0/1:105:50,55:50:1742:55:1965:-145.516,0,-125.452	0/1:95:25,70:25:891:70:2482:-195.033,0,-51.9109	0/0:122:122,0:122:4354:0:0:0,-36.7257,-392.035	0/0:97:97,0:97:3449:0:0:0,-29.1999,-310.623
chr08	3295764	.	G	A	139408	PASS	AB=0.554006;ABP=73.8425;AC=152;AF=0.808511;AN=188;AO=6566;CIGAR=1X;DP=7819;DPB=7819;DPRA=0;EPP=14260.9;EPPR=2713.01;GTI=3;LEN=1;MEANALT=1.05319;MQM=45.003;MQMR=58.9407;NS=94;NUMALT=1;ODDS=0.731029;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235368;QR=44638;RO=1248;RPL=0;RPP=14260.9;RPPR=2713.01;RPR=6566;RUN=1;SAF=6566;SAP=14260.9;SAR=0;SRF=1248;SRP=2713.01;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:788:-69.1905,-6.62266,0	1/1:147:0,147:0:0:147:5261:-458.68,-44.2514,0	0/1:119:43,76:43:1548:76:2736:-203.536,0,-102.973	1/1:175:0,175:0:0:175:6273:-556.993,-52.6803,0	0/1:68:30,38:30:1076:38:1368:-100.798,0,-76.6782	0/1:49:29,20:29:1044:20:716:-46.9769,0,-79.4266	1/1:81:0,81:0:0:81:2882:-256.849,-24.3834,0	1/1:104:0,104:0:0:104:3729:-327.133,-31.3071,0	1/1:120:0,120:0:0:120:4304:-373.862,-36.1236,0	1/1:103:0,103:0:0:103:3685:-324.505,-31.0061,0	1/1:33:1,32:1:36:32:1146:-98.1363,-6.33572,0	1/1:73:0,73:0:0:73:2628:-230.948,-21.9752,0	1/1:71:0,71:0:0:71:2544:-221.172,-21.3731,0	1/1:46:0,46:0:0:46:1641:-145.052,-13.8474,0	1/1:77:0,77:0:0:77:2764:-245.736,-23.1793,0	1/1:31:0,31:0:0:31:1093:-96.657,-9.33193,0	1/1:47:0,47:0:0:47:1673:-144.948,-14.1484,0	1/1:51:0,51:0:0:51:1817:-160.234,-15.3525,0	1/1:32:0,32:0:0:32:1147:-99.8927,-9.63296,0	1/1:209:0,209:0:0:209:7505:-665.812,-62.9153,0	1/1:159:0,159:0:0:159:5693:-500.854,-47.8638,0	0/1:96:62,34:62:2209:34:1224:-80.7683,0,-169.943	1/1:64:0,64:0:0:64:2292:-203.075,-19.2659,0	0/1:56:15,41:15:536:41:1476:-113.546,0,-31.7125	1/1:76:0,76:0:0:76:2732:-241.433,-22.8783,0	0/1:274:127,146:127:4529:146:5243:-384.988,0,-325.148	0/1:171:69,102:69:2476:102:3648:-269.843,0,-171.572	1/1:41:0,41:0:0:41:1476:-130.687,-12.3422,0	1/1:173:0,173:0:0:173:6209:-554.516,-52.0782,0	1/1:61:2,59:2:72:59:2112:-179.869,-11.5261,0	0/1:95:56,39:56:2004:39:1400:-95.7824,0,-152.036	0/1:3:1,2:1:36:2:72:-5.83909,0,-2.69518	1/1:17:0,17:0:0:17:608:-54.2964,-5.11751,0	0/1:8:3,5:3:108:5:180:-13.7884,0,-7.66411	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	1/1:14:0,14:0:0:14:504:-44.1194,-4.21442,0	1/1:188:1,187:1:36:187:6708:-594.036,-52.9954,0	0/1:168:58,110:58:2065:110:3952:-297.779,0,-135.538	0/1:75:32,43:32:1148:43:1523:-110.034,0,-80.9527	1/1:7:0,7:0:0:7:244:-21.3144,-2.10721,0	0/1:123:38,85:38:1352:85:3056:-233.269,0,-84.1709	0/1:33:21,12:21:752:12:432:-27.8474,0,-58.0239	0/1:91:26,65:26:917:65:2310:-176.976,0,-55.4507	0/1:75:38,37:38:1355:37:1328:-95.653,0,-99.6157	1/1:50:0,50:0:0:50:1795:-158.738,-15.0515,0	0/1:59:23,36:23:820:36:1292:-97.6836,0,-56.3617	0/1:101:29,72:29:1021:72:2588:-195.804,0,-61.7008	0/1:123:80,43:80:2876:43:1541:-99.1901,0,-221.936	1/1:119:0,119:0:0:119:4264:-378.46,-35.8226,0	1/1:112:0,112:0:0:112:4019:-355.661,-33.7154,0	1/1:165:0,165:0:0:165:5905:-526.282,-49.67,0	0/1:6:3,3:3:108:3:108:-8.18089,0,-8.26899	0/1:114:37,77:37:1332:77:2764:-208.101,0,-85.7625	0/1:8:1,7:1:36:7:252:-20.4959,0,-1.19003	0/1:6:2,4:2:72:4:140:-10.5433,0,-5.02863	0/1:121:54,66:54:1932:66:2372:-173.192,0,-137.75	0/1:32:15,17:15:540:17:612:-45.2628,0,-39.3036	1/1:5:0,5:0:0:5:180:-16.4513,-1.50515,0	0/1:10:1,9:1:36:9:324:-26.0846,0,-0.587975	1/1:50:0,50:0:0:50:1785:-155.156,-15.0515,0	1/1:94:1,93:1:36:93:3313:-290.012,-24.6985,0	1/1:3:0,3:0:0:3:104:-9.6321,-0.90309,0	0/1:117:58,59:58:2073:59:2116:-152.989,0,-151.582	1/1:128:0,128:0:0:128:4581:-404.775,-38.5318,0	1/1:80:0,80:0:0:80:2876:-253.228,-24.0824,0	1/1:96:0,96:0:0:96:3448:-306.94,-28.8989,0	1/1:180:0,180:0:0:180:6468:-574.152,-54.1854,0	0/1:88:50,38:50:1796:38:1353:-93.6952,0,-135.3	1/1:5:0,5:0:0:5:180:-16.3232,-1.50515,0	1/1:83:0,83:0:0:83:2984:-260.433,-24.9855,0	1/1:78:0,78:0:0:78:2800:-248.396,-23.4803,0	1/1:18:0,18:0:0:18:648:-58.1225,-5.41854,0	1/1:88:0,88:0:0:88:3122:-272.725,-26.4906,0	0/1:85:31,53:31:1116:53:1908:-141.328,0,-75.0847	1/1:78:0,78:0:0:78:2804:-247.666,-23.4803,0	1/1:161:0,161:0:0:161:5780:-514.098,-48.4658,0	1/1:96:0,96:0:0:96:3448:-300.713,-28.8989,0	1/1:130:0,130:0:0:130:4672:-406.578,-39.1339,0	0/1:15:11,4:11:396:4:144:-8.51228,0,-31.4196	1/1:147:0,147:0:0:147:5256:-462.311,-44.2514,0	0/1:93:38,54:38:1364:54:1944:-142.147,0,-94.7772	1/1:215:0,215:0:0:215:7709:-682.374,-64.7215,0	1/1:83:1,82:1:36:82:2940:-254.845,-21.3872,0	1/1:60:0,60:0:0:60:2148:-191.409,-18.0618,0	0/1:73:30,42:30:1068:42:1512:-111.389,0,-74.3591	1/1:124:0,124:0:0:124:4464:-396.143,-37.3277,0	1/1:44:0,44:0:0:44:1580:-138.051,-13.2453,0	0/1:81:43,38:43:1544:38:1353:-93.9744,0,-114.751	1/1:76:0,76:0:0:76:2736:-237.987,-22.8783,0	0/1:14:6,8:6:216:8:288:-21.6897,0,-15.5242	0/1:61:27,34:27:964:34:1224:-90.0457,0,-68.7131	0/1:85:55,30:55:1957:30:1080:-69.9853,0,-150.816	1/1:146:0,146:0:0:146:5198:-460.93,-43.9504,0	1/1:86:0,86:0:0:86:3088:-275.003,-25.8886,0
chr08	3326456	.	ATACT	GTACC,ATACC	265113	PASS	AB=0.462678,0.532446;ABP=67.5208,51.765;AC=152,36;AF=0.808511,0.191489;AN=188;AO=9429,2858;CIGAR=1X3M1X,4M1X;DP=12375;DPB=12375.2;DPRA=0,1.56065;EPP=20140.5,6105.29;EPPR=9.52472;GTI=2;LEN=5,1;MEANALT=2.2766,2.79167;MQM=59.9556,59.9899;MQMR=60;NS=94;NUMALT=2;ODDS=0.28761;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=136,0;PQR=0;PRO=0;QA=331886,102032;QR=103;RO=3;RPL=9391,2846;RPP=20149.1,6105.29;RPPR=9.52472;RPR=38,12;RUN=1,1;SAF=1,0;SAP=20469.1,6209.08;SAR=9428,2858;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:82:0,82,0:0:0:82,0:2884,0:-259.798,-24.6845,0,-259.798,-24.6845,-259.798	1/1:214:0,210,0:0:0:210,0:7363,0:-662.374,-63.2163,0,-662.374,-63.2163,-662.374	1/2:260:0,118,142:0:0:118,142:4161,5092:-754.458,-415.676,-380.155,-339.136,0,-296.39	1/1:272:0,270,0:0:0:270,0:9496,0:-854.34,-81.2781,0,-854.34,-81.2781,-854.34	1/2:123:0,49,74:0:0:49,74:1743,2664:-359.776,-217.729,-202.978,-142.404,0,-120.128	1/2:93:0,51,42:0:0:51,42:1818,1512:-271.922,-123.731,-108.379,-148.549,0,-135.905	1/1:176:0,173,0:0:0:173,0:6087,0:-547.612,-52.0782,0,-547.612,-52.0782,-547.612	1/1:190:0,186,0:0:0:186,0:6549,0:-589.164,-55.9916,0,-589.164,-55.9916,-589.164	1/1:266:0,262,3:0:0:262,3:9116,108:-820.064,-78.8699,0,-811.252,-70.0576,-810.349	1/1:90:0,89,0:0:0:89,0:3121,0:-280.758,-26.7917,0,-280.758,-26.7917,-280.758	1/1:29:0,29,0:0:0:29,0:1016,0:-91.75,-8.72987,0,-91.75,-8.72987,-91.75	1/1:69:0,69,0:0:0:69,0:2401,0:-216.345,-20.7711,0,-216.345,-20.7711,-216.345	1/1:71:0,70,0:0:0:70,0:2473,0:-222.563,-21.0721,0,-222.563,-21.0721,-222.563	1/1:45:0,45,0:0:0:45,0:1580,0:-142.489,-13.5464,0,-142.489,-13.5464,-142.489	1/1:56:0,54,0:0:0:54,0:1910,0:-171.817,-16.2556,0,-171.817,-16.2556,-171.817	1/1:45:0,44,1:0:0:44,1:1556,36:-139.971,-13.2453,0,-137.034,-9.94808,-136.733	1/1:25:0,25,0:0:0:25,0:871,0:-78.7055,-7.52575,0,-78.7055,-7.52575,-78.7055	1/1:48:0,47,0:0:0:47,0:1683,0:-151.446,-14.1484,0,-151.446,-14.1484,-151.446	1/1:36:0,36,0:0:0:36,0:1283,0:-115.773,-10.8371,0,-115.773,-10.8371,-115.773	1/1:283:0,279,1:0:0:279,1:9793,36:-881,-83.9874,0,-878.062,-81.0416,-877.761	1/1:246:0,244,0:0:0:244,0:8590,0:-772.817,-73.4513,0,-772.817,-73.4513,-772.817	1/2:259:0,96,162:0:0:96,162:3372,5782:-745.815,-471.369,-442.47,-274.44,0,-225.673	1/1:144:0,143,1:0:0:143,1:5004,36:-450.155,-43.0473,0,-447.217,-40.1099,-446.916	1/2:140:0,76,62:0:0:76,62:2683,2213:-398.941,-180.458,-157.579,-218.526,0,-199.863	1/1:108:0,107,0:0:0:107,0:3767,0:-338.874,-32.2102,0,-338.874,-32.2102,-338.874	1/2:401:0,186,213:0:0:186,213:6548,7622:-1154.71,-621.646,-565.655,-533.169,0,-469.05	1/2:359:0,164,193:0:0:164,193:5785,6874:-1031.32,-560.302,-510.933,-471.042,0,-412.943	1/1:35:0,35,0:0:0:35,0:1232,0:-111.183,-10.5361,0,-111.183,-10.5361,-111.183	1/1:320:0,313,2:0:0:313,2:11098,72:-998.386,-94.2224,0,-992.511,-88.339,-991.909	1/1:180:0,176,3:0:0:176,3:6178,108:-555.783,-52.9813,0,-546.971,-44.1091,-546.068	1/2:143:0,71,72:0:0:71,72:2485,2537:-409.053,-206.904,-185.531,-202.5,0,-180.826	1/2:49:0,18,31:0:0:18,31:628,1096:-140.694,-89.618,-84.1995,-51.4268,0,-42.0948	1/1:17:0,17,0:0:0:17,0:606,0:-54.8713,-5.11751,0,-54.8713,-5.11751,-54.8713	1/2:10:1,2,7:1:36:2,7:71,252:-23.1075,-17.6245,-19.9599,-2.84275,0,-3.67462	1/1:21:0,21,0:0:0:21,0:731,0:-66.1092,-6.32163,0,-66.1092,-6.32163,-66.1092	1/1:12:0,12,0:0:0:12,0:415,0:-37.68,-3.61236,0,-37.68,-3.61236,-37.68	1/1:222:0,222,0:0:0:222,0:7844,0:-705.975,-66.8287,0,-705.975,-66.8287,-705.975	1/2:238:0,99,136:0:0:99,136:3495,4843:-679.371,-394.763,-364.961,-284.641,0,-243.701	1/2:46:0,21,25:0:0:21,25:748,900:-134.761,-73.7953,-67.4736,-61.3236,0,-53.7978	1/1:11:0,11,0:0:0:11,0:390,0:-35.4387,-3.31133,0,-35.4387,-3.31133,-35.4387	1/2:272:0,143,124:0:0:143,124:5073,4436:-775.057,-361.741,-318.694,-413.329,0,-376.002	1/2:40:0,28,12:0:0:28,12:1001,432:-117.226,-35.6088,-27.18,-81.9767,0,-78.3643	1/2:287:0,125,159:0:0:125,159:4396,5644:-817.729,-459.894,-422.266,-357.867,0,-310.003	1/2:67:0,45,22:0:0:45,22:1603,788:-195.277,-64.6221,-51.0758,-131.013,0,-124.39	1/1:78:0,78,0:0:0:78,0:2753,0:-248.008,-23.4803,0,-248.008,-23.4803,-248.008	1/2:204:0,96,108:0:0:96,108:3396,3829:-588.899,-312.294,-283.396,-276.958,0,-244.447	1/2:227:0,99,127:0:0:99,127:3444,4514:-647.857,-367.834,-338.032,-280.015,0,-241.784	1/2:331:0,142,189:0:0:142,189:5001,6747:-957.554,-550.41,-507.664,-407.498,0,-350.603	1/1:179:0,173,0:0:0:173,0:6076,0:-546.617,-52.0782,0,-546.617,-52.0782,-546.617	1/1:172:0,171,0:0:0:171,0:6065,0:-545.599,-51.4761,0,-545.599,-51.4761,-545.599	1/1:213:0,213,0:0:0:213,0:7493,0:-674.427,-64.1194,0,-674.427,-64.1194,-674.427	1/2:15:0,10,5:0:0:10,5:350,180:-43.5167,-15.0469,-12.0366,-28.8263,0,-27.3212	1/2:250:0,124,126:0:0:124,126:4376,4524:-725.729,-369.395,-332.068,-356.69,0,-318.76	1/2:76:0,37,39:0:0:37,39:1275,1404:-218.477,-114.919,-103.781,-103.91,0,-92.1693	1/2:45:0,13,31:0:0:13,31:461,1108:-127.897,-90.3393,-86.4259,-37.5531,0,-28.2212	1/2:163:1,83,79:1:31:83,79:2917,2832:-465.666,-2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chr08	3335295	.	G	A	44330.7	PASS	AB=0.548514;ABP=75.9099;AC=35;AF=0.18617;AN=188;AO=1970;CIGAR=1X;DP=10217;DPB=10217;DPRA=1.00035;EPP=4280.81;EPPR=17885.1;GTI=0;LEN=1;MEANALT=1.08889;MQM=50.703;MQMR=57.2487;NS=94;NUMALT=1;ODDS=1.08535;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70004;QR=292976;RO=8239;RPL=982;RPP=3.04998;RPPR=65.0062;RPR=988;RUN=1;SAF=982;SAP=3.04998;SAR=988;SRF=3876;SRP=65.5186;SRR=4363;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:33,0:33:1158:0:0:0,-9.93399,-104.096	0/0:141:141,0:141:5037:0:0:0,-42.4452,-452.884	0/1:178:90,88:90:3205:88:3140:-222.786,0,-234.756	0/0:163:163,0:163:5818:0:0:0,-49.0679,-522.991	0/1:85:50,35:50:1768:35:1244:-84.3562,0,-133.451	0/1:41:18,23:18:644:23:824:-60.5236,0,-45.9022	0/0:94:94,0:94:3329:0:0:0,-28.2968,-298.953	0/0:144:143,1:143:5067:1:36:0,-39.75,-452.073	0/0:96:96,0:96:3435:0:0:0,-28.8989,-309.179	0/0:82:81,1:81:2900:1:36:0,-21.0862,-257.51	0/0:123:123,0:123:4380:0:0:0,-37.0267,-394.102	0/0:140:140,0:140:4940:0:0:0,-42.1442,-443.822	0/0:160:160,0:160:5710:0:0:0,-48.1648,-513.535	0/0:134:134,0:134:4764:0:0:0,-40.338,-428.655	0/0:112:112,0:112:3982:0:0:0,-33.7154,-357.597	0/0:121:119,2:119:4189:2:72:0,-29.5879,-369.982	0/0:113:113,0:113:3975:0:0:0,-34.0164,-357.366	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.731	0/0:138:138,0:138:4915:0:0:0,-41.5421,-441.887	0/0:179:178,0:178:6313:0:0:0,-53.5833,-566.332	0/0:159:159,0:159:5628:0:0:0,-47.8638,-504.772	0/1:53:15,38:15:531:38:1356:-105.989,0,-32.1673	0/0:86:86,0:86:3079:0:0:0,-25.8886,-276.998	0/1:108:53,55:53:1850:55:1972:-141.677,0,-134.056	0/0:70:70,0:70:2498:0:0:0,-21.0721,-224.978	0/1:223:101,121:101:3607:121:4324:-320.619,0,-257.608	0/1:191:95,96:95:3404:96:3404:-242.179,0,-248.721	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.214	0/0:219:219,0:219:7796:0:0:0,-65.9256,-701.087	0/0:61:59,2:59:2082:2:72:0,-11.5261,-180.71	0/1:109:53,56:53:1896:56:1976:-142.35,0,-137.839	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6786	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.6855	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9596	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1704	0/0:297:297,0:297:10537:0:0:0,-89.4059,-946.31	0/1:90:40,50:40:1424:50:1784:-129.942,0,-101.264	0/1:107:53,54:53:1886:54:1936:-138.768,0,-137.702	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.34615	0/1:135:61,74:61:2176:74:2636:-189.528,0,-154.631	0/1:74:37,37:37:1319:37:1311:-94.8578,0,-96.652	0/1:175:72,103:72:2556:103:3680:-271.241,0,-177.472	0/1:125:61,64:61:2158:64:2284:-165.528,0,-156.675	0/0:130:130,0:130:4593:0:0:0,-39.1339,-413.089	0/1:91:40,51:40:1408:51:1814:-135.799,0,-99.6026	0/1:107:52,55:52:1849:55:1948:-140.028,0,-134.345	0/1:161:62,99:62:2207:99:3493:-261.21,0,-150.295	0/0:112:110,1:110:3905:1:36:0,-30.3125,-347.259	0/0:130:130,0:130:4647:0:0:0,-39.1339,-417.606	0/0:169:169,0:169:6007:0:0:0,-50.8741,-540.333	0/1:8:5,3:5:161:3:108:-7.39853,0,-12.387	0/1:177:83,94:83:2965:94:3339:-237.056,0,-213.116	0/1:33:13,19:13:459:19:672:-50.3527,0,-31.6518	0/1:10:7,3:7:252:3:104:-6.55831,0,-20	0/1:141:66,75:66:2360:75:2680:-193.336,0,-169.567	0/1:47:16,31:16:568:31:1100:-83.076,0,-37.1389	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:19:3,16:3:108:16:576:-46.4377,0,-4.3556	0/0:72:72,0:72:2552:0:0:0,-21.6742,-229.347	0/0:162:161,1:161:5692:1:36:0,-45.1686,-507.747	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3627	0/1:102:43,59:43:1540:59:2064:-154.674,0,-108.17	0/0:159:159,0:159:5683:0:0:0,-47.8638,-510.252	0/0:60:60,0:60:2143:0:0:0,-18.0618,-192.834	0/0:86:86,0:86:3059:0:0:0,-25.8886,-275.312	0/0:211:209,2:209:7471:2:72:0,-56.9538,-665.093	0/1:116:32,84:32:1148:84:3008:-230.431,0,-68.3831	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.353	0/0:76:76,0:76:2704:0:0:0,-22.8783,-242.942	0/0:153:153,0:153:5463:0:0:0,-46.0576,-491.769	0/0:30:30,0:30:1059:0:0:0,-9.0309,-95.5919	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.343	0/1:82:35,47:35:1233:47:1665:-122.816,0,-86.5058	0/0:190:189,0:189:6697:0:0:0,-56.8947,-601.906	0/0:180:180,0:180:6443:0:0:0,-54.1854,-579.362	0/0:90:89,0:89:3146:0:0:0,-26.7917,-281.857	0/0:101:100,1:100:3552:1:36:0,-26.8058,-315.386	0/1:21:7,14:7:252:14:495:-37.1492,0,-16.6887	0/0:110:108,2:108:3872:2:72:0,-26.5498,-341.083	0/1:99:34,65:34:1209:65:2326:-175.507,0,-79.2044	0/0:222:221,1:221:7887:1:36:0,-63.3742,-705.715	0/0:151:151,0:151:5362:0:0:0,-45.4555,-482.124	0/0:112:112,0:112:3952:0:0:0,-33.7154,-354.326	0/1:166:78,88:78:2775:88:3105:-226.511,0,-199.759	0/0:227:227,0:227:8038:0:0:0,-68.3338,-722.281	0/0:68:68,0:68:2423:0:0:0,-20.47,-217.92	0/1:130:57,72:57:2035:72:2541:-185.468,0,-144.136	0/0:132:132,0:132:4687:0:0:0,-39.736,-421.003	0/1:98:48,50:48:1701:50:1781:-129.378,0,-123.026	0/1:149:78,71:78:2775:71:2492:-176.007,0,-204.793	0/1:108:43,65:43:1515:65:2282:-171.817,0,-103.929	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.37	0/0:216:216,0:216:7692:0:0:0,-65.0225,-691.105
chr08	3463891	.	G	A	141216	PASS	AB=0.474883;ABP=19.3727;AC=152;AF=0.808511;AN=188;AO=6544;CIGAR=1X;DP=8132;DPB=8132;DPRA=0;EPP=14195.8;EPPR=3438.29;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.925;MQMR=59.9142;NS=94;NUMALT=1;ODDS=0.9572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233393;QR=56462;RO=1586;RPL=6542;RPP=14195.8;RPPR=3446.97;RPR=2;RUN=1;SAF=6544;SAP=14213.1;SAR=0;SRF=1585;SRP=3438.29;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:48:0,48:0:0:48:1716:-154.725,-14.4494,0	0/1:140:85,55:85:3035:55:1976:-135.962,0,-231.236	1/1:167:0,167:0:0:167:5943:-534.976,-50.272,0	0/1:39:20,19:20:716:19:680:-49.789,0,-53.0275	0/1:22:9,13:9:324:13:451:-34.2499,0,-22.8832	1/1:116:0,116:0:0:116:4123:-371.256,-34.9195,0	1/1:74:0,74:0:0:74:2653:-239.015,-22.2762,0	1/1:83:1,82:1:36:82:2944:-261.405,-21.3872,0	1/1:127:0,127:0:0:127:4540:-408.698,-38.2308,0	1/1:108:0,108:0:0:108:3844:-346.152,-32.5112,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:86:0,86:0:0:86:3077:-277.145,-25.8886,0	1/1:155:0,155:0:0:155:5554:-499.954,-46.6597,0	1/1:57:0,57:0:0:57:2023:-182.34,-17.1587,0	1/1:46:0,46:0:0:46:1656:-149.324,-13.8474,0	1/1:100:0,100:0:0:100:3545:-319.26,-30.103,0	1/1:67:1,66:1:36:66:2346:-207.8,-16.5707,0	1/1:32:0,31:0:0:31:1116:-100.384,-9.33193,0	1/1:137:1,136:1:36:136:4857:-433.684,-37.6428,0	1/1:108:0,108:0:0:108:3858:-347.415,-32.5112,0	0/1:105:73,32:73:2597:32:1144:-71.6614,0,-202.369	1/1:26:0,26:0:0:26:899:-81.2204,-7.82678,0	0/1:58:23,35:23:813:35:1252:-95.5253,0,-56.0212	1/1:58:0,58:0:0:58:2065:-186.121,-17.4597,0	0/1:283:125,158:125:4455:158:5613:-420.102,0,-314.481	0/1:94:38,56:38:1356:56:1995:-151.527,0,-94.0437	1/1:41:1,40:1:36:40:1436:-126.801,-9.60603,0	1/1:264:0,264:0:0:264:9401:-846.043,-79.4719,0	1/1:91:2,89:2:72:89:3176:-279.227,-20.557,0	0/1:101:59,42:59:2100:42:1488:-103.81,0,-158.866	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:28:0,28:0:0:28:992:-89.5944,-8.42884,0	0/1:5:4,1:4:144:1:28:-1.29458,0,-11.8085	1/1:10:0,10:0:0:10:360:-32.7434,-3.0103,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:181:0,181:0:0:181:6482:-583.095,-54.4864,0	0/1:159:86,73:86:3084:73:2620:-188.183,0,-229.924	0/1:88:45,43:45:1585:43:1544:-112.762,0,-116.448	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:158:78,80:78:2783:80:2876:-211.513,0,-203.143	0/1:37:18,19:18:644:19:680:-50.3911,0,-47.1525	0/1:117:65,51:65:2295:51:1813:-128.204,0,-171.572	0/1:68:30,38:30:1067:38:1356:-101.868,0,-75.8712	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	0/1:104:68,36:68:2420:36:1288:-84.9165,0,-186.75	0/1:93:51,42:51:1813:42:1495:-106.848,0,-135.454	0/1:113:41,72:41:1468:72:2592:-199.509,0,-98.3997	1/1:123:0,123:0:0:123:4365:-393.016,-37.0267,0	1/1:113:1,112:1:36:112:4003:-356.859,-30.4181,0	1/1:122:0,122:0:0:122:4371:-393.564,-36.7257,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:151:77,74:77:2716:74:2634:-191.849,0,-199.228	0/1:56:47,9:47:1661:9:324:-12.6482,0,-132.918	0/1:22:14,8:14:500:8:284:-19.2807,0,-38.0826	0/1:82:36,46:36:1258:46:1640:-123.204,0,-88.8338	0/1:47:25,22:25:892:22:779:-55.9651,0,-66.4513	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:74:0,74:0:0:74:2621:-236.137,-22.2762,0	1/1:161:1,160:1:36:160:5675:-507.242,-44.8676,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:150:72,78:72:2584:78:2763:-203.757,0,-187.654	1/1:153:4,149:4:144:149:5316:-465.26,-32.744,0	1/1:84:0,84:0:0:84:2949:-265.639,-25.2865,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:134:2,132:2:72:132:4729:-418.931,-33.5013,0	0/1:87:79,8:79:2819:8:288:-0.0777982,0,-227.76	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:81:0,81:0:0:81:2866:-258.158,-24.3834,0	1/1:37:0,37:0:0:37:1309:-118.11,-11.1381,0	1/1:125:0,125:0:0:125:4460:-401.57,-37.6288,0	0/1:34:20,14:20:716:14:500:-35.1012,0,-54.5327	1/1:126:0,126:0:0:126:4508:-405.887,-37.9298,0	1/1:156:1,155:1:36:155:5535:-494.675,-43.3624,0	1/1:86:0,86:0:0:86:3076:-276.698,-25.8886,0	1/1:69:1,68:1:36:68:2425:-214.892,-17.1728,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:77:0,77:0:0:77:2763:-248.911,-23.1793,0	0/1:77:36,41:36:1279:41:1472:-109.597,0,-92.2331	1/1:243:1,242:1:36:242:8645:-774.448,-69.552,0	1/1:115:2,113:2:68:113:4010:-354.621,-28.1627,0	1/1:80:0,80:0:0:80:2855:-257.1,-24.0824,0	0/1:85:39,46:39:1384:46:1640:-122.3,0,-99.2713	1/1:130:0,130:0:0:130:4608:-414.884,-39.1339,0	1/1:47:0,47:0:0:47:1671:-150.677,-14.1484,0	0/1:61:18,43:18:612:43:1523:-119,0,-37.0336	1/1:94:0,94:0:0:94:3351:-301.778,-28.2968,0	0/1:84:46,38:46:1643:38:1351:-96.6031,0,-122.871	0/1:180:93,87:93:3336:87:3107:-225.672,0,-246.272	0/1:54:35,19:35:1251:19:684:-45.6347,0,-96.6387	1/1:86:0,86:0:0:86:3065:-276.078,-25.8886,0	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0
chr08	3464487	.	GTCA	ATCG,ATCA	322056	PASS	AB=0.390878,0.606215;ABP=572.179,542.252;AC=150,38;AF=0.797872,0.202128;AN=188;AO=9361,3576;CIGAR=1X2M1X,1X3M;DP=12977;DPB=12988;DPRA=139.527,1.51577;EPP=20330.2,7759.51;EPPR=0;GTI=9;LEN=4,1;MEANALT=1.94624,2.39623;MQM=54.8225,59.818;MQMR=0;NS=94;NUMALT=2;ODDS=0.80592;PAIRED=0,0;PAIREDR=0;PAO=38,6;PQA=1188,214;PQR=0;PRO=0;QA=326116,127618;QR=0;RO=0;RPL=8300,1774;RPP=12159,3.48637;RPPR=0;RPR=1061,1802;RUN=1,1;SAF=8300,1775;SAP=12159,3.42079;SAR=1061,1801;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55,0:0:0:55,0:1880,0:-168.503,-16.5567,0,-168.503,-16.5567,-168.503	1/1:142:0,142,0:0:0:142,0:4969,0:-445.168,-42.7463,0,-445.168,-42.7463,-445.168	1/2:64:0,27,37:0:0:27,37:937,1320:-183.633,-107.636,-99.5083,-76.0291,0,-64.8909	1/1:322:0,321,0:0:0:321,0:11201,0:-1006.33,-96.6306,0,-1006.33,-96.6306,-1006.33	1/2:155:0,52,103:0:0:52,103:1844,3688:-450.93,-301.07,-285.416,-150.215,0,-119.209	1/2:117:0,62,55:0:0:62,55:2197,1954:-337.774,-159.233,-140.569,-178.578,0,-162.021	1/1:163:0,162,0:0:0:162,0:5600,0:-502.903,-48.7669,0,-502.903,-48.7669,-502.903	1/1:195:0,193,1:0:0:193,1:6730,36:-603.77,-58.0988,0,-600.833,-55.1381,-600.532	1/1:206:0,205,0:0:0:205,0:7125,0:-639.246,-61.7112,0,-639.246,-61.7112,-639.246	1/1:145:0,144,0:0:0:144,0:4961,0:-445.898,-43.3483,0,-445.898,-43.3483,-445.898	1/1:57:0,57,0:0:0:57,0:2009,0:-180.366,-17.1587,0,-180.366,-17.1587,-180.366	1/1:82:0,82,0:0:0:82,0:2822,0:-252.657,-24.6845,0,-252.657,-24.6845,-252.657	1/1:75:0,75,0:0:0:75,0:2595,0:-232.91,-22.5773,0,-232.91,-22.5773,-232.91	1/1:122:0,122,0:0:0:122,0:4244,0:-380.478,-36.7257,0,-380.478,-36.7257,-380.478	1/1:75:0,74,1:0:0:74,1:2588,36:-231.918,-22.2762,0,-228.98,-18.979,-228.679	1/1:55:0,55,0:0:0:55,0:1917,0:-171.978,-16.5567,0,-171.978,-16.5567,-171.978	1/1:60:0,60,0:0:0:60,0:2071,0:-185.161,-18.0618,0,-185.161,-18.0618,-185.161	1/1:62:0,61,1:0:0:61,1:2160,32:-192.485,-18.3628,0,-189.907,-15.4645,-189.606	1/1:30:0,30,0:0:0:30,0:1059,0:-94.9875,-9.0309,0,-94.9875,-9.0309,-94.9875	1/1:218:0,217,0:0:0:217,0:7584,0:-680.523,-65.3235,0,-680.523,-65.3235,-680.523	1/1:165:0,165,0:0:0:165,0:5716,0:-513.006,-49.67,0,-513.006,-49.67,-513.006	1/2:197:0,76,120:0:0:76,120:2632,4295:-564.11,-350.243,-327.365,-213.858,0,-177.734	1/1:134:0,132,0:0:0:132,0:4625,0:-415.543,-39.736,0,-415.543,-39.736,-415.543	1/2:281:0,123,156:0:0:123,156:4290,5596:-804.093,-456.518,-419.492,-347.67,0,-300.709	1/1:105:0,104,1:0:0:104,1:3562,36:-319.234,-31.3071,0,-316.296,-28.0099,-315.995	1/2:634:0,295,336:0:0:295,336:10289,11985:-1812.34,-976.994,-888.19,-835.399,0,-734.253	1/2:368:0,123,243:0:0:123,243:4290,8684:-1056,-708.013,-670.986,-347.958,0,-274.808	1/1:34:0,34,0:0:0:34,0:1193,0:-107.446,-10.235,0,-107.446,-10.235,-107.446	1/1:599:0,595,3:0:0:595,3:20918,108:-1881.06,-179.113,0,-1872.25,-170.24,-1871.34	1/1:153:0,144,8:0:0:144,8:4979,283:-446.784,-43.3483,0,-423.733,-20.25,-421.325	1/2:249:0,95,154:0:0:95,154:3324,5493:-717.235,-448.127,-419.529,-269.46,0,-223.101	1/2:30:0,6,24:0:0:6,24:216,860:-88.1006,-70.4971,-68.6909,-17.9627,0,-10.738	1/1:6:0,6,0:0:0:6,0:216,0:-19.5162,-1.80618,0,-19.5162,-1.80618,-19.5162	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:4:0,4,0:0:0:4,0:137,0:-12.6344,-1.20412,0,-12.6344,-1.20412,-12.6344	1/1:5:0,5,0:0:0:5,0:174,0:-15.7365,-1.50515,0,-15.7365,-1.50515,-15.7365	1/1:317:0,315,0:0:0:315,0:11016,0:-989.36,-94.8245,0,-989.36,-94.8245,-989.36	1/2:310:0,123,187:0:0:123,187:4293,6708:-895.464,-547.159,-510.132,-348.337,0,-292.045	1/2:78:0,41,37:0:0:41,37:1406,1326:-222.257,-108.459,-96.1167,-114.148,0,-103.01	1/1:4:0,4,0:0:0:4,0:139,0:-12.8292,-1.20412,0,-12.8292,-1.20412,-12.8292	1/2:274:0,90,184:0:0:90,184:3123,6585:-790.12,-537.283,-510.191,-253.186,0,-197.796	1/2:66:0,19,47:0:0:19,47:654,1671:-189.502,-136.528,-130.809,-53.3208,0,-39.1724	1/2:274:0,86,188:0:0:86,188:2982,6717:-789.825,-547.944,-522.055,-242.231,0,-185.637	1/2:136:0,49,87:0:0:49,87:1727,3103:-393.482,-253.294,-238.544,-140.541,0,-114.352	1/1:43:0,43,0:0:0:43,0:1457,0:-131.067,-12.9443,0,-131.067,-12.9443,-131.067	1/2:271:0,134,137:0:0:134,137:4663,4860:-774.959,-396.305,-355.967,-379.005,0,-337.764	1/2:75:0,37,38:0:0:37,38:1280,1337:-212.873,-109.154,-98.0159,-104.067,0,-92.6278	1/2:239:0,42,195:0:0:42,195:1419,6952:-681.615,-566.735,-554.092,-114.914,0,-56.2128	1/1:70:0,70,0:0:0:70,0:2453,0:-220.179,-21.0721,0,-220.179,-21.0721,-220.179	1/1:134:0,133,0:0:0:133,0:4634,0:-415.73,-40.037,0,-415.73,-40.037,-415.73	1/1:374:0,374,0:0:0:374,0:13051,0:-1174.03,-112.585,0,-1174.03,-112.585,-1174.03	1/2:15:0,4,11:0:0:4,11:143,382:-42.9791,-31.3711,-30.167,-11.9614,0,-8.6501	1/2:91:0,40,51:0:0:40,51:1406,1824:-263.345,-149.087,-137.046,-114.612,0,-99.2599	1/2:141:0,79,61:0:0:79,61:2768,2179:-402.801,-177.741,-153.959,-225.163,0,-206.8	1/2:19:0,7,12:0:0:7,12:248,432:-55.7749,-35.6088,-33.5016,-20.522,0,-16.9096	1/2:173:0,57,116:0:0:57,116:1969,4140:-496.98,-337.806,-320.647,-159.463,0,-124.54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chr08	3470262	.	C	T	47192.7	PASS	AB=0.479446;ABP=19.9705;AC=35;AF=0.18617;AN=188;AO=2233;CIGAR=1X;DP=11735;DPB=11735;DPRA=1.22237;EPP=727.258;EPPR=20605.9;GTI=0;LEN=1;MEANALT=1.04762;MQM=43.1527;MQMR=59.9859;NS=94;NUMALT=1;ODDS=2.72295;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80026;QR=338935;RO=9500;RPL=1548;RPP=727.258;RPPR=20605.9;RPR=685;RUN=1;SAF=2233;SAP=4851.91;SAR=0;SRF=9500;SRP=20632;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:71:71,0:71:2515:0:0:0,-21.3731,-226.6	0/0:138:138,0:138:4918:0:0:0,-41.5421,-442.772	0/1:148:110,38:110:3925:38:1352:-75.0409,0,-308.89	0/0:342:342,0:342:12209:0:0:0,-102.952,-1098.65	0/1:136:80,56:80:2864:56:2012:-134.729,0,-217.057	0/1:77:40,37:40:1436:37:1320:-91.8935,0,-106.358	0/0:98:98,0:98:3483:0:0:0,-29.5009,-313.68	0/0:205:205,0:205:7305:0:0:0,-61.7111,-657.499	0/0:121:121,0:121:4309:0:0:0,-36.4246,-387.987	0/0:192:192,0:192:6845:0:0:0,-57.7978,-616.121	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:68:68,0:68:2420:0:0:0,-20.47,-218.054	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/0:44:44,0:44:1546:0:0:0,-13.2453,-139.428	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.766	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.863	0/0:53:53,0:53:1854:0:0:0,-15.9546,-167.136	0/0:111:111,0:111:3951:0:0:0,-33.4143,-355.78	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0316	0/0:270:270,0:270:9655:0:0:0,-81.2781,-868.903	0/0:197:197,0:197:7016:0:0:0,-59.3029,-631.505	0/1:183:73,110:73:2620:110:3948:-292.655,0,-180.959	0/0:168:168,0:168:5977:0:0:0,-50.573,-538.037	0/1:200:101,99:101:3583:99:3560:-252.186,0,-262.473	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.791	0/1:586:275,311:275:9791:311:11174:-807.275,0,-704.737	0/1:183:95,88:95:3383:88:3160:-223.348,0,-249.587	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/0:304:304,0:304:10863:0:0:0,-91.5131,-977.573	0/0:199:191,8:191:6810:8:280:0,-34.8229,-587.874	0/1:138:85,52:85:3040:52:1859:-121.526,0,-232.229	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:2:1,1:1:36:1:36:-2.91895,0,-2.99621	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:218:218,0:218:7804:0:0:0,-65.6245,-702.39	0/1:358:179,179:179:6371:179:6402:-452.633,0,-465.715	0/1:52:30,22:30:1080:22:788:-54.1327,0,-81.8597	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:133:84,49:84:2990:49:1752:-114.89,0,-229.295	0/1:41:23,18:23:824:18:648:-45.0502,0,-62.1411	0/1:185:94,90:94:3376:90:3198:-225.842,0,-248.455	0/1:78:35,43:35:1251:43:1544:-112.141,0,-89.4139	0/0:60:60,0:60:2132:0:0:0,-18.0618,-192.149	0/1:190:113,77:113:4039:77:2759:-186.248,0,-306.499	0/1:179:96,83:96:3431:83:2988:-209.692,0,-255.119	0/1:193:109,84:109:3900:84:2999:-205.284,0,-293.095	0/0:183:183,0:183:6547:0:0:0,-55.0885,-589.312	0/0:193:193,0:193:6904:0:0:0,-58.0988,-621.428	0/0:173:173,0:173:6162:0:0:0,-52.0782,-554.681	0/1:5:4,1:4:144:1:36:-1.99755,0,-11.8085	0/1:154:91,63:91:3260:63:2256:-150.394,0,-247.262	0/1:68:34,34:34:1211:34:1220:-86.3935,0,-88.8246	0/1:4:2,2:2:72:2:72:-5.4858,0,-5.6326	0/1:154:82,72:82:2909:72:2580:-180.198,0,-215.687	0/1:94:55,39:55:1957:39:1396:-94.4341,0,-148.107	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:5:3,2:3:108:2:72:-5.21348,0,-8.57002	0/0:104:104,0:104:3714:0:0:0,-31.3071,-334.461	0/0:108:108,0:108:3831:0:0:0,-32.5112,-344.942	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:316:136,180:136:4828:180:6447:-474.271,0,-339.551	0/0:289:289,0:289:10310:0:0:0,-86.9977,-927.828	0/0:93:93,0:93:3321:0:0:0,-27.9958,-299.107	0/0:139:139,0:139:4987:0:0:0,-41.8432,-448.962	0/0:322:318,4:318:11345:4:144:0,-83.7949,-1007.8	0/1:256:114,142:114:4059:142:5108:-370.351,0,-288.405	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:120:120,0:120:4292:0:0:0,-36.1236,-386.458	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:156:155,1:155:5524:1:36:0,-43.3624,-493.688	0/1:54:35,19:35:1251:19:680:-43.7541,0,-96.6387	0/0:183:182,1:182:6476:1:36:0,-51.5675,-579.407	0/0:223:223,0:223:7975:0:0:0,-67.1297,-717.773	0/0:123:123,0:123:4388:0:0:0,-37.0267,-395.092	0/0:165:165,0:165:5896:0:0:0,-49.6699,-530.751	0/1:4:1,3:1:36:3:97:-7.63963,0,-2.39415	0/0:151:150,1:150:5355:1:36:0,-41.9345,-478.563	0/1:93:48,45:48:1707:45:1612:-113.463,0,-125.919	0/0:298:298,0:298:10651:0:0:0,-89.7069,-958.499	0/0:113:113,0:113:4036:0:0:0,-34.0164,-363.426	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.897	0/1:123:61,62:61:2163:62:2224:-157.491,0,-157.907	0/0:214:214,0:214:7612:0:0:0,-64.4204,-685.106	0/0:50:50,0:50:1771:0:0:0,-15.0515,-159.672	0/1:74:44,30:44:1572:30:1080:-72.5846,0,-119.495	0/0:85:84,1:84:3020:1:36:0,-22.0665,-268.509	0/1:22:9,13:9:324:13:460:-32.9555,0,-22.8832	0/1:68:35,33:35:1243:33:1188:-84.456,0,-91.7038	0/1:66:27,39:27:955:39:1395:-102.428,0,-66.3969	0/0:109:109,0:109:3864:0:0:0,-32.8123,-347.956	0/0:112:111,1:111:3984:1:36:0,-30.2127,-355.247
chr08	3483407	.	T	C	115086	PASS	AB=0.473449;ABP=16.732;AC=150;AF=0.797872;AN=188;AO=5441;CIGAR=1X;DP=6652;DPB=6652;DPRA=18.2418;EPP=11818;EPPR=2619.63;GTI=1;LEN=1;MEANALT=1.05495;MQM=59.9776;MQMR=60;NS=94;NUMALT=1;ODDS=0.549276;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190929;QR=42863;RO=1205;RPL=5441;RPP=11818;RPPR=2619.63;RPR=0;RUN=1;SAF=5441;SAP=11818;SAR=0;SRF=1205;SRP=2619.63;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:982:-88.6917,-8.42884,0	1/1:117:0,117:0:0:117:4085:-367.836,-35.2205,0	0/1:148:80,68:80:2859:68:2399:-171.613,0,-212.995	1/1:98:0,98:0:0:98:3424:-308.375,-29.5009,0	0/1:60:28,32:28:996:32:1131:-84.036,0,-71.8931	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.0815	1/1:76:1,75:1:36:75:2637:-233.978,-19.28,0	1/1:68:0,68:0:0:68:2375:-214.005,-20.47,0	1/1:91:0,91:0:0:91:3190:-287.321,-27.3937,0	1/1:70:0,70:0:0:70:2475:-223.004,-21.0721,0	1/1:60:0,60:0:0:60:2037:-183.594,-18.0618,0	1/1:76:0,76:0:0:76:2645:-238.294,-22.8783,0	1/1:70:0,70:0:0:70:2425:-218.504,-21.0721,0	1/1:52:1,51:1:36:51:1807:-159.313,-12.0553,0	1/1:64:0,64:0:0:64:2251:-202.851,-19.2659,0	1/1:61:0,61:0:0:61:2085:-187.913,-18.3628,0	1/1:61:0,61:0:0:61:2154:-194.124,-18.3628,0	1/1:67:0,67:0:0:67:2354:-211.927,-20.169,0	1/1:23:0,23:0:0:23:808:-73.0401,-6.92369,0	1/1:168:2,166:2:72:166:5863:-520.935,-43.7363,0	1/1:135:0,135:0:0:135:4702:-423.343,-40.6391,0	0/1:61:35,26:35:1252:26:916:-64.3936,0,-94.6222	1/1:59:0,59:0:0:59:2096:-188.907,-17.7608,0	0/1:102:51,50:51:1790:50:1744:-126.475,0,-130.615	1/1:43:1,42:1:36:42:1487:-130.525,-9.34602,0	0/1:173:104,69:104:3716:69:2444:-168.135,0,-282.564	0/1:139:81,58:81:2887:58:2015:-139.775,0,-218.223	1/1:33:0,33:0:0:33:1155:-104.254,-9.93399,0	1/1:213:0,213:0:0:213:7424:-668.215,-64.1194,0	1/1:129:1,128:1:36:128:4515:-402.921,-35.2346,0	0/1:85:45,40:45:1608:40:1376:-98.5437,0,-119.423	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:161:2,159:2:68:159:5604:-498.028,-42.0081,0	0/1:144:76,68:76:2690:68:2384:-171.467,0,-198.994	0/1:58:25,33:25:896:33:1163:-87.5164,0,-63.5006	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:56:18,38:18:644:38:1342:-104.221,0,-41.4329	0/1:31:18,13:18:631:13:447:-31.2258,0,-47.7838	0/1:130:67,63:67:2399:63:2218:-160.75,0,-177.032	0/1:66:31,35:31:1100:35:1227:-90.8639,0,-79.4423	1/1:47:0,47:0:0:47:1620:-146.081,-14.1484,0	0/1:38:19,19:19:669:19:667:-48.9155,0,-49.0948	0/1:32:8,24:8:288:24:835:-65.8329,0,-16.6344	0/1:29:12,17:12:432:17:597:-45.3263,0,-30.4913	1/1:50:0,50:0:0:50:1763:-158.953,-15.0515,0	1/1:120:0,120:0:0:120:4207:-378.812,-36.1236,0	1/1:106:0,106:0:0:106:3741:-336.891,-31.9092,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:104:43,61:43:1544:61:2125:-160.208,0,-107.946	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:6:2,4:2:72:4:126:-9.84523,0,-5.03054	0/1:63:39,24:39:1396:24:842:-57.1316,0,-106.974	0/1:16:13,3:13:449:3:108:-5.25869,0,-35.921	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:63:2,60:2:72:60:2135:-185.581,-12.187,0	1/1:114:1,113:1:36:113:3929:-350.177,-30.7191,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:53:26,27:26:936:27:942:-69.1352,0,-68.6049	1/1:146:0,146:0:0:146:5172:-465.624,-43.9504,0	1/1:57:0,57:0:0:57:2007:-180.903,-17.1587,0	1/1:65:0,65:0:0:65:2272:-204.367,-19.567,0	1/1:130:0,130:0:0:130:4630:-416.864,-39.1339,0	0/1:92:64,28:64:2247:28:993:-61.9877,0,-174.797	1/1:17:0,17:0:0:17:595:-53.8767,-5.11751,0	1/1:77:0,77:0:0:77:2728:-245.762,-23.1793,0	1/1:69:0,69:0:0:69:2434:-219.315,-20.7711,0	1/1:6:0,6:0:0:6:188:-17.2277,-1.80618,0	1/1:71:0,71:0:0:71:2489:-224.262,-21.3731,0	0/1:25:19,6:19:680:6:207:-11.4418,0,-54.0034	1/1:116:0,116:0:0:116:4062:-365.768,-34.9195,0	1/1:130:0,129:0:0:129:4559:-410.117,-38.8329,0	1/1:101:1,100:1:36:100:3556:-316.646,-26.8058,0	1/1:122:2,120:2:72:120:4228:-373.866,-29.8889,0	0/0:4:3,0:3:108:0:0:0,-0.90309,-9.71534	1/1:73:1,71:1:36:71:2509:-222.464,-18.4357,0	0/1:119:55,64:55:1980:64:2265:-168.291,0,-142.652	1/1:96:0,96:0:0:96:3368:-303.337,-28.8989,0	1/1:80:0,80:0:0:80:2813:-253.406,-24.0824,0	1/1:52:0,52:0:0:52:1822:-164.257,-15.6536,0	0/1:76:37,39:37:1315:39:1335:-97.5632,0,-95.7727	1/1:121:0,121:0:0:121:4205:-378.633,-36.4246,0	1/1:42:0,42:0:0:42:1476:-133.133,-12.6433,0	0/1:74:36,37:36:1245:37:1295:-94.5128,0,-90.0148	1/1:84:1,83:1:36:83:2871:-255.027,-21.6882,0	0/1:40:17,23:17:603:23:809:-61.0871,0,-42.5583	0/1:96:54,42:54:1890:42:1499:-106.305,0,-141.478	0/1:64:46,18:46:1637:18:640:-38.6634,0,-128.351	1/1:89:0,89:0:0:89:3114:-280.488,-26.7917,0	1/1:104:0,104:0:0:104:3630:-326.904,-31.3071,0
chr08	3483425	.	A	G	114704	PASS	AB=0.471724;ABP=18.4835;AC=151;AF=0.803191;AN=188;AO=5402;CIGAR=1X;DP=6601;DPB=6601;DPRA=20.4783;EPP=11724.6;EPPR=2604.43;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9907;MQMR=60;NS=94;NUMALT=1;ODDS=1.62378;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189834;QR=42671;RO=1198;RPL=5400;RPP=11715.9;RPPR=2604.43;RPR=2;RUN=1;SAF=5401;SAP=11724.6;SAR=1;SRF=1198;SRP=2604.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,25:0:0:25:888:-79.8794,-7.52575,0	1/1:117:0,117:0:0:117:4071:-366.579,-35.2205,0	0/1:146:81,65:81:2882:65:2272:-160.788,0,-215.666	1/1:93:1,92:1:36:92:3296:-293.261,-24.3975,0	0/1:60:29,31:29:1040:31:1081:-79.5351,0,-75.8526	0/1:29:13,16:13:464:16:572:-43.0836,0,-33.3676	1/1:78:1,77:1:36:77:2647:-234.876,-19.8821,0	1/1:69:0,69:0:0:69:2417:-217.784,-20.7711,0	1/1:82:0,82:0:0:82:2863:-257.907,-24.6845,0	1/1:66:0,66:0:0:66:2324:-209.419,-19.868,0	1/1:59:0,59:0:0:59:2081:-187.559,-17.7608,0	1/1:76:0,76:0:0:76:2651:-238.835,-22.8783,0	1/1:68:0,68:0:0:68:2389:-215.266,-20.47,0	1/1:55:0,55:0:0:55:1926:-173.616,-16.5567,0	1/1:64:0,64:0:0:64:2239:-201.773,-19.2659,0	1/1:61:1,60:1:36:60:2112:-186.749,-14.7646,0	1/1:62:0,62:0:0:62:2181:-196.555,-18.6639,0	1/1:64:0,64:0:0:64:2249:-202.672,-19.2659,0	1/1:22:0,22:0:0:22:766:-69.2585,-6.62266,0	1/1:168:2,166:2:72:166:5889:-523.268,-43.7363,0	1/1:127:0,127:0:0:127:4471:-402.564,-38.2308,0	0/1:64:36,28:36:1271:28:995:-70.5981,0,-95.4262	1/1:59:0,59:0:0:59:2068:-186.388,-17.7608,0	0/1:101:53,48:53:1896:48:1697:-122.61,0,-140.514	1/1:43:1,42:1:36:42:1486:-130.435,-9.34602,0	0/1:170:102,68:102:3629:68:2426:-167.42,0,-275.64	0/1:136:82,54:82:2922:54:1891:-129.524,0,-222.274	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:214:1,213:1:36:213:7554:-676.307,-60.8221,0	1/1:129:2,127:2:68:127:4471:-396.105,-32.3752,0	0/1:83:47,36:47:1679:36:1271:-89.7066,0,-126.411	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:4:0,4:0:0:4:135:-12.4832,-1.20412,0	1/1:163:1,162:1:36:162:5676:-507.368,-45.4696,0	0/1:148:80,68:80:2835:68:2411:-172.694,0,-210.837	0/1:58:26,32:26:936:32:1126:-84.1869,0,-67.0997	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:57:17,40:17:599:40:1405:-109.586,0,-37.0794	0/1:31:18,13:18:640:13:464:-32.7656,0,-48.5974	0/1:133:67,66:67:2391:66:2336:-170.461,0,-175.41	0/1:66:31,35:31:1108:35:1248:-92.7569,0,-80.163	1/1:43:0,43:0:0:43:1508:-136.01,-12.9443,0	0/1:38:19,19:19:680:19:672:-49.3677,0,-50.09	0/1:32:7,25:7:252:25:887:-70.5152,0,-13.396	0/1:28:11,17:11:388:17:607:-46.5327,0,-26.8285	1/1:48:0,48:0:0:48:1689:-152.294,-14.4494,0	1/1:122:0,122:0:0:122:4274:-384.841,-36.7257,0	1/1:105:0,105:0:0:105:3679:-331.318,-31.6082,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:105:44,61:44:1567:61:2140:-161.258,0,-109.713	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:64:39,25:39:1396:25:872:-59.5276,0,-106.673	0/1:17:14,3:14:500:3:108:-4.95766,0,-40.2187	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:60:0,60:0:0:60:2126:-191.606,-18.0618,0	1/1:113:1,112:1:36:112:3893:-346.968,-30.4181,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	0/1:49:24,25:24:860:25:887:-65.3976,0,-62.9714	1/1:147:0,147:0:0:147:5180:-466.345,-44.2514,0	1/1:57:0,57:0:0:57:2008:-180.991,-17.1587,0	1/1:65:0,65:0:0:65:2316:-208.701,-19.567,0	1/1:132:0,132:0:0:132:4636:-417.407,-39.736,0	0/1:91:63,28:63:2214:28:996:-62.5612,0,-172.131	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	1/1:77:0,77:0:0:77:2735:-246.393,-23.1793,0	1/1:71:0,71:0:0:71:2443:-220.122,-21.3731,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:72:0,72:0:0:72:2511:-226.238,-21.6742,0	0/1:23:18,5:18:648:5:180:-9.62837,0,-51.7282	1/1:112:0,112:0:0:112:3884:-349.757,-33.7154,0	1/1:130:0,130:0:0:130:4616:-415.605,-39.1339,0	1/1:106:1,105:1:36:105:3695:-329.152,-28.3109,0	1/1:115:1,114:1:36:114:4022:-358.57,-31.0202,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:73:0,73:0:0:73:2532:-228.127,-21.9752,0	0/1:118:53,65:53:1900:65:2305:-172.188,0,-135.756	1/1:92:0,92:0:0:92:3231:-291.014,-27.6948,0	1/1:75:0,75:0:0:75:2620:-236.047,-22.5773,0	1/1:54:0,54:0:0:54:1882:-169.655,-16.2556,0	0/1:76:38,38:38:1360:38:1339:-97.9307,0,-99.8223	1/1:125:0,125:0:0:125:4298:-387,-37.6288,0	1/1:39:0,39:0:0:39:1349:-121.704,-11.7402,0	0/1:73:35,38:35:1238:38:1336:-98.562,0,-89.7477	1/1:83:1,82:1:36:82:2890:-256.738,-21.3872,0	0/1:37:16,21:16:576:21:724:-54.3386,0,-41.0369	0/1:94:54,40:54:1920:40:1415:-99.3498,0,-144.78	0/1:60:42,18:42:1488:18:644:-40.2288,0,-116.153	1/1:90:0,90:0:0:90:3126:-281.567,-27.0927,0	1/1:111:0,111:0:0:111:3875:-348.948,-33.4143,0
chr08	3483483	.	G	A	19724.3	PASS	AB=0.524672;ABP=14.6895;AC=36;AF=0.191489;AN=188;AO=1162;CIGAR=1X;DP=5845;DPB=5845;DPRA=1.0379;EPP=2517.58;EPPR=10122.1;GTI=1;LEN=1;MEANALT=1.02564;MQM=59.6299;MQMR=59.8457;NS=94;NUMALT=1;ODDS=0.949241;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41487;QR=164881;RO=4680;RPL=1;RPP=2517.58;RPPR=10113.5;RPR=1161;RUN=1;SAF=0;SAP=2526.26;SAR=1162;SRF=1;SRP=10156.8;SRR=4679;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:8,0:8:288:0:0:0,-2.40824,-25.6349	0/0:65:65,0:65:2310:0:0:0,-19.5669,-208.16	0/1:34:22,12:22:780:12:432:-28.8271,0,-60.288	0/0:108:108,0:108:3834:0:0:0,-32.5112,-345.254	0/1:30:12,18:12:432:18:629:-47.8964,0,-30.1903	0/1:36:12,24:12:428:24:860:-66.8766,0,-28.0217	0/0:77:77,0:77:2736:0:0:0,-23.1793,-246.428	0/0:69:69,0:69:2411:0:0:0,-20.7711,-217.241	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.63	0/0:72:72,0:72:2518:0:0:0,-21.6742,-226.866	0/0:63:63,0:63:2179:0:0:0,-18.9649,-196.365	0/0:73:73,0:73:2551:0:0:0,-21.9752,-229.829	0/0:59:59,0:59:2048:0:0:0,-17.7608,-184.585	0/0:75:75,0:75:2620:0:0:0,-22.5772,-236.022	0/0:48:48,0:48:1673:0:0:0,-14.4494,-150.848	0/0:56:56,0:56:1966:0:0:0,-16.8577,-176.434	0/0:60:60,0:60:2070:0:0:0,-18.0618,-186.566	0/0:49:49,0:49:1728:0:0:0,-14.7505,-155.802	0/0:39:39,0:39:1356:0:0:0,-11.7402,-122.333	0/0:117:116,0:116:4134:0:0:0,-34.9195,-371.885	0/0:82:82,0:82:2872:0:0:0,-24.6845,-258.714	0/1:82:28,54:28:1000:54:1915:-147.937,0,-64.3734	0/0:38:38,0:38:1335:0:0:0,-11.4391,-120.449	0/1:50:26,24:26:912:24:864:-63.0218,0,-67.3444	0/0:58:58,0:58:2031:0:0:0,-17.4597,-183.06	0/1:232:115,117:115:4057:117:4200:-308.332,0,-295.479	0/1:90:43,47:43:1504:47:1683:-124.635,0,-108.283	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:183:183,0:183:6510:0:0:0,-55.0885,-585.98	0/0:93:93,0:93:3298:0:0:0,-27.9958,-297.04	0/1:65:32,33:32:1127:33:1184:-87.3014,0,-82.1705	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.276	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2592	0/0:169:169,0:169:5895:0:0:0,-50.8741,-530.664	0/1:119:70,49:70:2467:49:1751:-122.051,0,-186.463	0/1:59:27,32:27:915:32:1152:-86.2248,0,-64.8931	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:94:38,56:38:1343:56:2012:-153.046,0,-92.0862	0/1:39:23,16:23:805:16:574:-40.2512,0,-61.0273	0/1:83:54,29:54:1895:29:1028:-67.8315,0,-145.839	0/1:52:30,22:30:1033:22:775:-54.3376,0,-77.6203	0/0:36:36,0:36:1210:0:0:0,-10.8371,-109.181	0/1:76:34,42:34:1211:42:1494:-111.874,0,-86.4171	0/1:66:30,36:30:1076:36:1296:-97.0596,0,-77.2849	0/1:89:39,50:39:1375:50:1766:-132.411,0,-97.2562	0/0:63:63,0:63:2216:0:0:0,-18.9649,-199.694	0/0:64:64,0:64:2262:0:0:0,-19.2659,-203.842	0/0:74:74,0:74:2615:0:0:0,-22.2762,-235.589	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:105:41,64:41:1455:64:2304:-175.996,0,-99.5663	0/1:35:10,25:10:351:25:884:-69.1844,0,-21.383	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:57:26,31:26:919:31:1116:-83.5746,0,-65.8628	0/1:32:15,17:15:528:17:608:-45.4144,0,-38.2184	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:15:12,3:12:428:3:104:-5.18259,0,-34.3434	0/0:49:49,0:49:1728:0:0:0,-14.7505,-155.802	0/0:152:152,0:152:5395:0:0:0,-45.7566,-485.669	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:108:60,47:60:2118:47:1657:-116.843,0,-158.317	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.524	0/0:58:58,0:58:2044:0:0:0,-17.4597,-184.217	0/0:33:33,0:33:1159:0:0:0,-9.93399,-104.615	0/0:54:54,0:54:1908:0:0:0,-16.2556,-171.994	0/1:99:34,65:34:1198:65:2299:-177.362,0,-78.2357	0/1:22:20,2:20:716:2:72:-0.214063,0,-58.1451	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.778	0/0:70:70,0:70:2476:0:0:0,-21.0721,-223.091	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:79:79,0:79:2818:0:0:0,-23.7814,-253.858	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	0/0:95:95,0:95:3356:0:0:0,-28.5978,-301.481	0/0:84:83,1:83:2952:1:36:0,-21.6882,-262.042	0/0:60:60,0:60:2063:0:0:0,-18.0618,-185.303	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.924	0/1:49:25,24:25:887:24:849:-61.7869,0,-65.3973	0/0:83:82,1:82:2919:1:36:0,-21.3872,-259.345	0/0:99:99,0:99:3515:0:0:0,-29.802,-316.559	0/0:53:53,0:53:1850:0:0:0,-15.9546,-166.774	0/1:58:25,33:25:900:33:1170:-88.138,0,-63.8613	0/0:102:101,1:101:3540:1:36:0,-27.1068,-315.21	0/0:44:44,0:44:1543:0:0:0,-13.2453,-139.158	0/1:54:25,29:25:868:29:1044:-78.011,0,-61.9845	0/0:60:60,0:60:2062:0:0:0,-18.0618,-185.844	0/1:57:23,34:23:798:34:1224:-93.2968,0,-54.9754	0/1:111:49,62:49:1697:62:2220:-166.639,0,-119.594	0/1:47:12,35:12:432:35:1241:-97.8418,0,-25.0728	0/0:43:43,0:43:1504:0:0:0,-12.9443,-135.65	0/0:89:89,0:89:3082:0:0:0,-26.7917,-277.601
chr08	3512757	.	AGTGG	GGTGG	108252	PASS	AB=0.431305;ABP=110.114;AC=149;AF=0.801075;AN=186;AO=5067;CIGAR=1X4M;DP=6587;DPB=6587.2;DPRA=23.8551;EPP=11005.9;EPPR=3199.47;GTI=2;LEN=1;MEANALT=1.36957;MQM=59.9686;MQMR=60;NS=93;NUMALT=1;ODDS=0.848412;PAIRED=0;PAIREDR=0;PAO=1;PQA=34;PQR=0;PRO=0;QA=180595;QR=52192;RO=1484;RPL=5067;RPP=11005.9;RPPR=3199.47;RPR=0;RUN=1;SAF=0;SAP=11005.9;SAR=5067;SRF=0;SRP=3225.48;SRR=1484;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	0/1:98:58,40:58:2057:40:1419:-98.5057,0,-155.9	1/1:115:0,114:0:0:114:4059:-365.178,-34.3174,0	0/1:42:13,28:13:451:28:988:-76.5321,0,-28.2194	0/1:57:30,27:30:1067:27:972:-70.6392,0,-79.1836	1/1:85:0,85:0:0:85:3023:-272.301,-25.5876,0	1/1:113:0,112:0:0:112:4008:-360.55,-33.7154,0	1/1:42:0,42:0:0:42:1488:-134.212,-12.6433,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	1/1:49:0,49:0:0:49:1718:-154.902,-14.7505,0	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	1/1:68:0,67:0:0:67:2391:-215.117,-20.169,0	1/1:86:0,86:0:0:86:3075:-276.978,-25.8886,0	1/1:53:0,53:0:0:53:1883:-169.748,-15.9546,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:57:0,56:0:0:56:2007:-180.543,-16.8577,0	1/1:52:0,52:0:0:52:1843:-166.15,-15.6536,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:101:0,100:0:0:100:3566:-320.807,-30.103,0	1/1:100:0,100:0:0:100:3560:-320.61,-30.103,0	0/1:95:78,15:78:2755:15:536:-20.2195,0,-219.837	1/1:25:1,24:1:36:24:856:-73.7628,-3.92748,0	0/1:82:32,50:32:1126:50:1792:-136.878,0,-76.9643	1/1:65:0,64:0:0:64:2292:-206.182,-19.2659,0	0/1:192:109,83:109:3838:83:2972:-209.915,0,-287.824	0/1:157:93,64:93:3268:64:2265:-156.85,0,-247.084	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:206:0,205:0:0:205:7300:-656.678,-61.7112,0	1/1:56:4,51:4:140:51:1811:-150.053,-3.96974,0	0/1:41:22,19:22:763:19:680:-49.1868,0,-56.6468	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:178:0,178:0:0:178:6318:-568.715,-53.5833,0	0/1:203:104,98:104:3683:98:3495:-253.593,0,-270.509	0/1:73:39,34:39:1376:34:1220:-88.1316,0,-102.164	.:.:.:.:.:.:.:.	0/1:92:46,46:46:1627:46:1647:-120.823,0,-119.024	0/1:50:31,19:31:1105:19:667:-45.3031,0,-84.7099	0/1:73:46,27:46:1609:27:960:-64.7395,0,-123.124	0/1:46:28,17:28:999:17:603:-40.6936,0,-76.3194	1/1:48:0,48:0:0:48:1703:-153.553,-14.4494,0	0/1:62:31,31:31:1064:31:1116:-82.0878,0,-77.3994	0/1:92:48,44:48:1688:44:1571:-113.986,0,-124.511	0/1:115:71,43:71:2486:43:1518:-102.235,0,-189.317	1/1:94:0,93:0:0:93:3310:-297.629,-27.9958,0	1/1:85:0,85:0:0:85:3040:-273.83,-25.5876,0	1/1:130:0,129:0:0:129:4608:-414.605,-38.8329,0	0/1:3:1,2:1:35:2:72:-5.93363,0,-2.59554	0/1:133:72,59:72:2531:59:2099:-149.423,0,-188.288	0/1:23:15,8:15:527:8:280:-18.6156,0,-40.836	0/1:13:7,6:7:245:6:207:-15.0535,0,-18.4771	0/1:114:57,57:57:1996:57:2048:-150.274,0,-145.596	0/1:5:3,2:3:106:2:72:-5.33157,0,-8.38395	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:23:11,12:11:388:12:428:-31.9351,0,-28.3334	1/1:52:0,51:0:0:51:1812:-163.002,-15.3525,0	1/1:123:0,123:0:0:123:4374:-393.836,-37.0267,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:140:68,71:68:2380:71:2528:-185.569,0,-172.257	1/1:140:0,139:0:0:139:4979:-447.937,-41.8432,0	1/1:60:0,57:0:0:57:2021:-181.805,-17.1587,0	1/1:73:0,73:0:0:73:2600:-234.249,-21.9752,0	1/1:68:1,65:1:36:65:2324:-205.852,-16.6112,0	0/1:115:79,36:79:2758:36:1288:-81.6051,0,-213.845	1/1:20:0,19:0:0:19:680:-61.2928,-5.71957,0	1/1:74:0,73:0:0:73:2589:-232.957,-21.9752,0	1/1:99:0,98:0:0:98:3487:-313.683,-29.5009,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:104:0,104:0:0:104:3732:-336.08,-31.3071,0	0/1:32:25,7:25:876:7:252:-13.396,0,-69.5235	1/1:49:0,48:0:0:48:1715:-154.383,-14.4494,0	1/1:98:0,98:0:0:98:3491:-314.402,-29.5009,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:56:0,56:0:0:56:1986:-179.013,-16.8577,0	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	1/1:99:1,98:1:34:98:3512:-312.891,-26.4031,0	0/1:82:48,33:48:1670:33:1166:-80.4441,0,-125.782	1/1:147:0,146:0:0:146:5225:-470.045,-43.9504,0	1/1:109:0,108:0:0:108:3853:-346.448,-32.5112,0	1/1:65:0,65:0:0:65:2305:-207.709,-19.567,0	0/1:66:35,29:35:1234:29:1014:-71.9729,0,-91.7668	1/1:118:0,117:0:0:117:4172:-375.304,-35.2205,0	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:70:30,40:30:1063:40:1432:-108.105,0,-74.9095	1/1:45:0,45:0:0:45:1591:-143.479,-13.5464,0	0/1:48:31,17:31:1101:17:600:-39.8798,0,-84.951	0/1:95:60,35:60:2088:35:1260:-85.1076,0,-159.592	0/1:54:40,14:40:1410:14:478:-27.0885,0,-110.942	1/1:40:0,40:0:0:40:1419:-128.007,-12.0412,0	1/1:67:0,67:0:0:67:2377:-214.188,-20.169,0
chr08	3582165	.	C	T	31581.9	PASS	AB=0.505115;ABP=3.65447;AC=38;AF=0.204301;AN=186;AO=1445;CIGAR=1X;DP=8718;DPB=8718;DPRA=0.839035;EPP=41.0013;EPPR=69.845;GTI=2;LEN=1;MEANALT=1;MQM=49.1903;MQMR=56.7895;NS=93;NUMALT=1;ODDS=4.51094;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50994;QR=256416;RO=7269;RPL=31;RPP=2877.3;RPPR=14544.8;RPR=1414;RUN=1;SAF=674;SAP=17.1497;SAR=771;SRF=3544;SRP=12.797;SRR=3725;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1246:0:0:0,-10.8371,-112.24	0/0:144:144,0:144:5101:0:0:0,-43.3483,-457.872	0/1:122:65,57:65:2305:57:2006:-139.806,0,-170.731	0/0:125:125,0:125:4424:0:0:0,-37.6287,-397.847	0/1:49:21,28:21:744:28:995:-69.1761,0,-52.3384	0/1:56:33,23:33:1180:23:819:-53.9242,0,-89.5059	0/0:120:119,1:119:4193:1:36:0,-32.6691,-373.9	0/0:90:90,0:90:3191:0:0:0,-27.0927,-286.125	0/0:93:93,0:93:3296:0:0:0,-27.9958,-295.445	0/0:109:109,0:109:3877:0:0:0,-32.8123,-348.509	0/0:114:114,0:114:3994:0:0:0,-34.3174,-359.304	0/0:143:143,0:143:5034:0:0:0,-43.0473,-451.941	0/0:154:154,0:154:5414:0:0:0,-46.3586,-486.17	0/0:125:125,0:125:4390:0:0:0,-37.6287,-394.314	0/0:119:119,0:119:4206:0:0:0,-35.8226,-378.322	0/0:92:92,0:92:3238:0:0:0,-27.6948,-291.011	0/0:120:120,0:120:4223:0:0:0,-36.1236,-378.491	0/0:97:97,0:97:3427:0:0:0,-29.1999,-307.862	0/0:113:113,0:113:3959:0:0:0,-34.0164,-354.736	0/0:98:98,0:98:3483:0:0:0,-29.5009,-313.541	0/0:138:137,1:137:4848:1:36:0,-37.9439,-432.35	0/1:22:6,16:6:207:16:568:-44.6317,0,-12.3442	0/0:52:52,0:52:1821:0:0:0,-15.6536,-163.615	0/1:90:47,43:47:1650:43:1535:-108.736,0,-121.343	0/0:70:70,0:70:2478:0:0:0,-21.0721,-222.951	0/1:184:96,88:96:3426:88:3085:-219.176,0,-252.969	0/1:150:78,72:78:2767:72:2566:-178.878,0,-203.765	0/0:57:57,0:57:1991:0:0:0,-17.1587,-179.25	0/0:149:148,0:148:5262:0:0:0,-44.5524,-473.039	0/0:91:88,3:88:3126:3:108:0,-17.587,-270.886	0/1:94:52,42:52:1839:42:1452:-101.243,0,-137.238	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.87	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8538	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.67347	0/0:314:313,0:313:10994:0:0:0,-94.2224,-988.639	0/1:58:30,28:30:1031:28:980:-67.0974,0,-75.5579	0/1:129:74,55:74:2604:55:1948:-128.906,0,-194.236	.:.:.:.:.:.:.:.	0/1:131:62,69:62:2165:69:2440:-174.392,0,-155.378	0/1:57:27,30:27:960:30:1051:-75.3179,0,-69.5137	0/1:85:33,52:33:1172:52:1822:-133.903,0,-80.027	0/1:147:78,69:78:2744:69:2434:-171.663,0,-202.748	0/0:110:110,0:110:3914:0:0:0,-33.1133,-352.004	0/1:50:31,19:31:1104:19:672:-45.2584,0,-84.5412	0/1:61:28,33:28:996:33:1175:-84.3852,0,-71.4989	0/1:101:51,50:51:1790:50:1776:-126.766,0,-130.924	0/0:71:70,1:70:2483:1:36:0,-17.7749,-220.031	0/0:105:105,0:105:3693:0:0:0,-31.6081,-332.029	0/0:113:113,0:113:3970:0:0:0,-34.0164,-357.121	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:117:52,65:52:1856:65:2308:-167.719,0,-131.694	0/1:36:22,14:22:779:14:500:-34.33,0,-59.5836	0/1:7:1,6:1:32:6:212:-16.4566,0,-1.08847	0/1:114:51,63:51:1776:63:2204:-160.107,0,-125.126	0/1:39:20,19:20:697:19:676:-48.5039,0,-51.2704	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3127	0/1:11:7,4:7:252:4:144:-9.82982,0,-19.6599	0/0:86:86,0:86:3042:0:0:0,-25.8886,-273.391	0/0:148:147,1:147:5178:1:36:0,-40.9542,-462.149	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5449	0/1:107:49,58:49:1718:58:2043:-150.048,0,-122.673	0/0:118:118,0:118:4158:0:0:0,-35.5215,-374.143	0/0:100:100,0:100:3527:0:0:0,-30.103,-316.764	0/0:80:80,0:80:2827:0:0:0,-24.0824,-254.336	0/0:98:97,1:97:3434:1:36:0,-25.9027,-305.339	0/1:54:17,37:17:596:37:1316:-99.984,0,-37.6858	0/0:78:78,0:78:2741:0:0:0,-23.4803,-245.282	0/0:82:82,0:82:2898:0:0:0,-24.6845,-260.135	0/0:147:147,0:147:5196:0:0:0,-44.2514,-466.625	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8355	0/0:70:70,0:70:2487:0:0:0,-21.0721,-223.151	0/1:85:46,39:46:1615:39:1380:-94.1913,0,-119.625	0/0:141:141,0:141:4988:0:0:0,-42.4452,-448.201	0/0:119:118,0:118:4173:0:0:0,-35.5215,-375.139	0/0:63:63,0:63:2231:0:0:0,-18.9649,-200.773	0/0:111:110,1:110:3891:1:36:0,-29.8161,-345.929	0/1:12:4,8:4:140:8:288:-21.8778,0,-9.30375	0/0:97:97,0:97:3422:0:0:0,-29.1999,-307.938	0/1:85:44,41:44:1558:41:1448:-101.572,0,-114.614	0/0:131:130,1:130:4604:1:36:0,-35.8367,-410.586	0/0:171:170,0:170:5995:0:0:0,-51.1751,-538.741	0/0:95:95,0:95:3318:0:0:0,-28.5978,-298.652	0/1:134:63,71:63:2240:71:2518:-182.734,0,-161.454	0/0:238:238,0:238:8383:0:0:0,-71.6451,-754.079	0/0:85:85,0:85:2966:0:0:0,-25.5875,-266.426	0/1:120:66,54:66:2320:54:1914:-129.25,0,-172.328	0/0:128:128,0:128:4477:0:0:0,-38.5318,-401.099	0/1:67:32,35:32:1117:35:1243:-88.7643,0,-80.5123	0/1:143:74,69:74:2581:69:2417:-169.14,0,-189.166	0/1:110:38,72:38:1324:72:2483:-186.679,0,-86.294	0/0:100:100,0:100:3548:0:0:0,-30.103,-319.201	0/0:192:192,0:192:6767:0:0:0,-57.7978,-608.827
chr08	3674469	.	A	G	71097.4	PASS	AB=0.56815;ABP=61.0209;AC=150;AF=0.797872;AN=188;AO=3319;CIGAR=1X;DP=3955;DPB=3955;DPRA=13.0055;EPP=7210.13;EPPR=1381.9;GTI=2;LEN=1;MEANALT=1.01099;MQM=59.2127;MQMR=32.0378;NS=94;NUMALT=1;ODDS=0.13967;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118355;QR=22770;RO=635;RPL=0;RPP=7210.13;RPPR=1381.9;RPR=3319;RUN=1;SAF=3319;SAP=7210.13;SAR=0;SRF=635;SRP=1381.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:648:-57.7919,-5.41854,0	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	0/1:101:38,63:38:1364:63:2249:-170.783,0,-72.315	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	0/1:30:11,19:11:396:19:684:-52.8594,0,-19.9225	0/1:22:9,13:9:324:13:464:-33.7508,0,-17.674	1/1:53:0,53:0:0:53:1889:-169.659,-15.9546,0	1/1:63:0,63:0:0:63:2256:-202.447,-18.9649,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:28:0,28:0:0:28:997:-88.7877,-8.42884,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:45:0,45:0:0:45:1601:-143.521,-13.5464,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:54:0,54:0:0:54:1917:-170.535,-16.2556,0	1/1:34:0,34:0:0:34:1201:-108.306,-10.235,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:18:0,18:0:0:18:648:-57.7919,-5.41854,0	1/1:22:0,22:0:0:22:792:-70.7466,-6.62266,0	1/1:45:0,45:0:0:45:1620:-144.835,-13.5464,0	1/1:56:0,56:0:0:56:1963:-174.371,-16.8577,0	0/1:34:21,13:21:756:13:453:-30.8348,0,-50.5757	1/1:43:0,43:0:0:43:1548:-137.965,-12.9443,0	0/1:19:3,16:3:108:16:572:-45.5334,0,-2.48096	1/1:32:0,32:0:0:32:1133:-102.277,-9.63296,0	0/1:90:36,54:36:1288:54:1940:-147.783,0,-76.9106	0/1:89:33,56:33:1188:56:2008:-152.788,0,-59.704	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:127:0,127:0:0:127:4537:-404.733,-38.2308,0	1/1:53:1,52:1:36:52:1848:-163.697,-13.0518,0	0/1:47:15,32:15:540:32:1152:-89.2136,0,-28.3331	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:0,12:0:0:12:432:-38.3586,-3.61236,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.34611	1/1:9:0,9:0:0:9:324:-28.6406,-2.70927,0	1/1:8:0,8:0:0:8:284:-25.339,-2.40824,0	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	0/1:92:30,62:30:1076:62:2224:-171.017,0,-51.4693	0/1:20:11,9:11:396:9:324:-23.4853,0,-23.7869	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:35:14,21:14:504:21:752:-54.8925,0,-26.3291	0/1:10:6,4:6:216:4:129:-8.91736,0,-12.88	0/1:78:40,38:40:1425:38:1353:-98.5881,0,-80.7199	0/1:6:3,3:3:108:3:108:-8.26899,0,-6.94001	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:51:13,38:13:464:38:1368:-106.95,0,-22.8352	0/1:64:37,27:37:1317:27:957:-67.1779,0,-79.5025	0/1:77:31,46:31:1116:46:1644:-125.069,0,-63.8916	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:37:0,37:0:0:37:1309:-117.979,-11.1381,0	1/1:45:1,44:1:36:44:1561:-137.165,-10.4227,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.3687	0/1:85:34,51:34:1220:51:1806:-135.269,0,-65.9252	0/1:18:5,13:5:180:13:468:-37.0411,0,-9.63698	0/1:7:3,4:3:108:4:144:-11.2064,0,-6.2389	0/1:67:28,39:28:1008:39:1392:-104.472,0,-53.2709	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.93491	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-14.7312	1/1:62:0,62:0:0:62:2205:-198.626,-18.6639,0	1/1:96:0,96:0:0:96:3436:-308.826,-28.8989,0	1/1:6:0,6:0:0:6:197:-18.0513,-1.80618,0	0/1:44:26,18:26:936:18:648:-45.4066,0,-63.4757	1/1:79:0,79:0:0:79:2779:-249.721,-23.7814,0	1/1:33:0,33:0:0:33:1188:-106.371,-9.93399,0	1/1:30:0,30:0:0:30:1076:-96.5246,-9.0309,0	1/1:55:0,55:0:0:55:1941:-174.916,-16.5567,0	0/1:80:56,24:56:1988:24:860:-53.6394,0,-131.492	1/1:22:1,21:1:36:21:756:-65.4645,-3.7199,0	1/1:22:0,22:0:0:22:784:-69.1659,-6.62266,0	1/1:37:0,37:0:0:37:1309:-118.11,-11.1381,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:63:0,63:0:0:63:2241:-201.952,-18.9649,0	0/1:34:8,26:8:288:26:932:-73.9638,0,-11.5245	1/1:100:1,99:1:36:99:3523:-310.019,-27.1222,0	1/1:91:0,90:0:0:90:3206:-288.4,-27.0927,0	1/1:90:0,90:0:0:90:3156:-278.351,-27.0927,0	1/1:48:0,48:0:0:48:1708:-153.149,-14.4494,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-5.18678	1/1:48:0,48:0:0:48:1724:-153.732,-14.4494,0	0/1:44:19,25:19:680:25:900:-68.0757,0,-38.0312	1/1:59:0,59:0:0:59:2074:-186.926,-17.7608,0	1/1:66:0,66:0:0:66:2360:-210.928,-19.868,0	1/1:33:0,33:0:0:33:1184:-106.24,-9.93399,0	0/1:14:6,8:6:216:8:284:-21.6889,0,-12.9656	1/1:47:0,47:0:0:47:1665:-148.807,-14.1484,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:35:14,21:14:504:21:756:-56.9719,0,-27.7348	1/1:42:0,42:0:0:42:1508:-135.158,-12.6433,0	0/1:20:12,8:12:432:8:284:-19.8828,0,-25.6195	0/1:74:36,38:36:1296:38:1345:-98.2147,0,-72.3141	0/1:30:14,16:14:500:16:572:-42.7825,0,-30.3487	1/1:56:0,56:0:0:56:2001:-178.63,-16.8577,0	1/1:36:0,36:0:0:36:1265:-114.15,-10.8371,0
chr08	3683457	.	G	T	29512.6	PASS	AB=0.339648;ABP=1488.43;AC=35;AF=0.18617;AN=188;AO=2284;CIGAR=1X;DP=21079;DPB=21079;DPRA=1.09307;EPP=4962.65;EPPR=40787.6;GTI=5;LEN=1;MEANALT=1.13725;MQM=59.9181;MQMR=57.0325;NS=94;NUMALT=1;ODDS=1.17888;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80653;QR=653849;RO=18782;RPL=2273;RPP=4867.57;RPPR=8.20648;RPR=11;RUN=1;SAF=2273;SAP=4867.57;SAR=11;SRF=9497;SRP=8.20648;SRR=9285;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:90:90,0:90:3145:0:0:0,-27.0927,-282.51	0/0:482:482,0:482:17074:0:0:0,-145.096,-1529.48	0/1:194:138,56:138:4835:56:2004:-122.044,0,-374.394	0/0:526:524,1:524:18295:1:36:0,-154.798,-1641.17	0/1:174:98,76:98:3421:76:2688:-189.785,0,-255.28	0/1:142:90,52:90:3120:52:1864:-125.293,0,-237.38	0/0:352:352,0:352:12255:0:0:0,-105.963,-1102.21	0/0:421:421,0:421:14593:0:0:0,-126.734,-1309.89	0/0:283:283,0:283:9755:0:0:0,-85.1915,-876.263	0/0:291:291,0:291:10128:0:0:0,-87.5997,-910.519	0/0:168:167,1:167:5818:1:32:0,-47.3737,-520.192	0/0:176:176,0:176:6024:0:0:0,-52.9813,-540.949	0/0:153:152,1:152:5281:1:36:0,-42.4593,-470.324	0/0:188:188,0:188:6503:0:0:0,-56.5936,-584.846	0/0:126:126,0:126:4369:0:0:0,-37.9298,-392.886	0/0:137:136,0:136:4704:0:0:0,-40.9401,-422.492	0/0:163:163,0:163:5659:0:0:0,-49.0679,-508.584	0/0:127:127,0:127:4421:0:0:0,-38.2308,-397.359	0/0:171:171,0:171:5858:0:0:0,-51.4761,-525.971	0/0:612:610,2:610:21372:2:72:0,-177.394,-1913.73	0/0:387:387,0:387:13481:0:0:0,-116.499,-1211.19	0/1:153:84,67:84:2953:67:2357:-166.593,0,-220.087	0/0:289:288,1:288:10079:1:36:0,-83.3994,-902.696	0/1:239:147,92:147:5082:92:3248:-220.589,0,-385.218	0/0:248:247,0:247:8645:0:0:0,-74.3544,-776.359	0/1:568:402,165:402:14124:165:5798:-350.871,0,-1099.04	0/1:375:257,118:257:8932:118:4112:-257.249,0,-690.324	0/0:74:74,0:74:2523:0:0:0,-22.2762,-227.175	0/0:721:720,1:720:25034:1:36:0,-213.506,-2247.71	0/0:516:516,0:516:18136:0:0:0,-155.331,-1626.58	0/1:400:258,142:258:9005:142:5033:-332.705,0,-689.671	0/1:26:17,9:17:590:9:324:-21.6791,0,-45.5835	0/0:52:52,0:52:1789:0:0:0,-15.6536,-160.904	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0667	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.8494	0/0:37:37,0:37:1276:0:0:0,-11.1381,-114.976	0/0:473:472,1:472:16329:1:36:0,-138.789,-1464.75	0/1:281:188,93:188:6460:93:3264:-209.391,0,-495.829	0/1:265:226,38:226:7874:38:1364:-43.2495,0,-626.351	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3655	0/1:277:180,97:180:6225:97:3434:-225.886,0,-476.402	0/1:74:49,25:49:1683:25:881:-57.3296,0,-129.382	0/1:242:179,63:179:6216:63:2231:-128.075,0,-486.293	0/1:166:108,58:108:3720:58:2075:-137.049,0,-284.853	0/0:132:132,0:132:4509:0:0:0,-39.736,-405.781	0/1:235:127,108:127:4418:108:3841:-275.144,0,-326.943	0/1:185:137,48:137:4795:48:1715:-98.9443,0,-375.387	0/1:330:192,137:192:6704:137:4773:-330.344,0,-501.933	0/0:253:253,0:253:8790:0:0:0,-76.1606,-790.597	0/0:228:227,1:227:7935:1:36:0,-65.0366,-710.134	0/0:370:370,0:370:12923:0:0:0,-111.381,-1161.72	0/1:15:10,5:10:347:5:167:-10.843,0,-27.0458	0/1:195:156,39:156:5440:39:1400:-67.5983,0,-429.442	0/1:99:75,24:75:2629:24:860:-47.9199,0,-207.025	0/1:30:17,13:17:604:13:429:-29.8957,0,-45.6351	0/1:205:129,76:129:4485:76:2701:-181.622,0,-341.893	0/1:131:82,49:82:2876:49:1743:-117.719,0,-219.399	0/0:23:23,0:23:788:0:0:0,-6.92369,-71.2283	0/1:36:19,17:19:660:17:604:-43.8535,0,-48.8208	0/0:236:236,0:236:8238:0:0:0,-71.0431,-740.564	0/0:299:299,0:299:10400:0:0:0,-90.008,-935.073	0/0:23:23,0:23:802:0:0:0,-6.92369,-72.4786	0/1:407:269,138:269:9289:138:4817:-311.17,0,-713.117	0/0:351:348,3:348:12201:3:108:0,-95.5864,-1087.14	0/0:233:232,1:232:8025:1:36:0,-66.5417,-716.923	0/0:207:205,2:205:7117:2:72:0,-55.5673,-633.324	0/0:432:429,3:429:14999:3:108:0,-119.97,-1336.78	0/1:139:70,69:70:2448:69:2434:-177.47,0,-178.452	0/0:76:76,0:76:2631:0:0:0,-22.8783,-236.85	0/0:168:164,4:164:5724:4:143:0,-37.7318,-500.412	0/0:178:176,1:176:6083:1:25:0,-51.088,-544.852	0/0:50:49,1:49:1686:1:36:0,-11.4532,-148.382	0/0:309:308,0:308:10755:0:0:0,-92.7172,-965.174	0/1:123:67,56:67:2301:56:2008:-143.967,0,-170.003	0/0:460:459,1:459:15942:1:36:0,-135.019,-1429.53	0/0:409:408,0:408:14334:0:0:0,-122.82,-1288.06	0/0:333:333,0:333:11541:0:0:0,-100.243,-1036.65	0/0:201:201,0:201:7000:0:0:0,-60.507,-629.049	0/1:30:18,12:18:604:12:428:-29.8279,0,-45.6359	0/0:244:244,0:244:8518:0:0:0,-73.4513,-765.737	0/1:229:156,73:156:5465:73:2575:-163.062,0,-422.266	0/0:534:533,0:533:18502:0:0:0,-160.449,-1663.3	0/0:218:218,0:218:7603:0:0:0,-65.6245,-683.843	0/0:138:138,0:138:4739:0:0:0,-41.5421,-426.328	0/1:145:107,38:107:3716:38:1300:-73.6445,0,-290.81	0/0:321:321,0:321:11208:0:0:0,-96.6306,-1007.82	0/0:111:111,0:111:3889:0:0:0,-33.4143,-349.342	0/1:105:62,43:62:2113:43:1523:-105.754,0,-158.63	0/0:151:151,0:151:5275:0:0:0,-45.4555,-474.185	0/1:104:71,33:71:2452:33:1171:-74.3896,0,-189.295	0/1:195:148,47:148:5076:47:1666:-91.5251,0,-397.315	0/1:137:53,83:53:1861:83:2937:-223.265,0,-126.285	0/0:223:223,0:223:7779:0:0:0,-67.1297,-699.615	0/0:213:213,0:213:7395:0:0:0,-64.1194,-665.009
chr08	3686242	.	T	C	23908.1	PASS	AB=0.332189;ABP=1356.38;AC=35;AF=0.18617;AN=188;AO=1871;CIGAR=1X;DP=18316;DPB=18316;DPRA=0.858816;EPP=4065.84;EPPR=35697.7;GTI=6;LEN=1;MEANALT=1.04348;MQM=59.5334;MQMR=59.7917;NS=94;NUMALT=1;ODDS=4.04048;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66631;QR=588356;RO=16442;RPL=1868;RPP=4039.82;RPPR=460.898;RPR=3;RUN=1;SAF=1868;SAP=4039.82;SAR=3;SRF=7289;SRP=461.882;SRR=9153;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.324	0/0:355:355,0:355:12718:0:0:0,-106.866,-1143.33	0/1:289:167,122:167:5984:122:4363:-305.807,0,-451.643	0/0:497:495,2:495:17695:2:72:0,-142.775,-1584.77	0/1:50:31,19:31:1108:19:671:-45.6643,0,-84.9795	0/1:75:56,19:56:2008:19:680:-38.9437,0,-158.416	0/0:222:222,0:222:7932:0:0:0,-66.8287,-713.87	0/0:344:344,0:344:12339:0:0:0,-103.554,-1110.14	0/0:256:256,0:256:9127:0:0:0,-77.0637,-821.232	0/0:283:283,0:283:10140:0:0:0,-85.1915,-912.335	0/0:121:121,0:121:4343:0:0:0,-36.4246,-391.041	0/0:208:208,0:208:7415:0:0:0,-62.6142,-666.738	0/0:185:185,0:185:6607:0:0:0,-55.6905,-594.687	0/0:169:169,0:169:6063:0:0:0,-50.8741,-545.757	0/0:185:185,0:185:6628:0:0:0,-55.6905,-596.586	0/0:173:173,0:173:6224:0:0:0,-52.0782,-560.22	0/0:156:156,0:156:5583:0:0:0,-46.9607,-502.33	0/0:137:137,0:137:4885:0:0:0,-41.2411,-439.578	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.75	0/0:366:365,1:365:13059:1:36:0,-106.579,-1171.5	0/0:419:419,0:419:15003:0:0:0,-126.132,-1349.95	0/1:57:21,36:21:752:36:1296:-99.7633,0,-50.8466	0/0:248:248,0:248:8872:0:0:0,-74.6554,-798.437	0/1:148:117,31:117:4193:31:1112:-55.6719,0,-332.98	0/0:182:182,0:182:6504:0:0:0,-54.7875,-584.65	0/1:395:290,105:290:10383:105:3751:-218.834,0,-815.379	0/1:390:247,143:247:8841:143:5126:-344.078,0,-678.116	0/0:77:77,0:77:2735:0:0:0,-23.1793,-246.376	0/0:472:472,0:472:16887:0:0:0,-142.086,-1519.25	0/0:270:256,13:256:9144:13:453:0,-40.2364,-781.801	0/1:174:124,50:124:4421:50:1778:-107.922,0,-345.296	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.39593	0/0:36:33,3:33:1166:3:108:0,-0.76191,-95.1704	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.798	0/0:386:386,0:386:13821:0:0:0,-116.198,-1243.66	0/1:172:123,49:123:4381:49:1755:-106.452,0,-342.682	0/1:98:82,16:82:2921:16:576:-22.6564,0,-233.425	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:247:196,51:196:7022:51:1802:-88.0902,0,-557.663	0/1:57:30,27:30:1065:27:964:-69.8997,0,-78.9964	0/1:304:175,129:175:6245:129:4601:-322.485,0,-470.482	0/1:130:87,43:87:3123:43:1535:-98.9752,0,-242.151	0/0:161:160,1:160:5727:1:36:0,-44.8676,-511.945	0/1:228:150,78:150:5352:78:2779:-181.706,0,-413.018	0/1:239:173,65:173:6216:65:2277:-133.155,0,-487.448	0/1:304:221,83:221:7936:83:2960:-175.105,0,-622.734	0/0:219:219,0:219:7839:0:0:0,-65.9256,-705.529	0/0:350:350,0:350:12547:0:0:0,-105.36,-1129.01	0/0:269:268,0:268:9616:0:0:0,-80.676,-865.155	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7435	0/1:240:166,74:166:5952:74:2642:-165.746,0,-463.519	0/1:96:66,30:66:2364:30:1069:-67.6212,0,-184.119	0/1:19:13,6:13:468:6:212:-13.7052,0,-36.7401	0/1:265:196,69:196:7020:69:2453:-141.244,0,-552.074	0/1:87:48,39:48:1707:39:1385:-98.6938,0,-127.676	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.651	0/1:13:8,5:8:280:5:180:-12.6387,0,-21.6023	0/0:206:206,0:206:7392:0:0:0,-62.0122,-665.281	0/0:203:200,3:200:7171:3:108:0,-51.0339,-635.334	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:216:141,75:141:5060:75:2687:-177.003,0,-390.51	0/0:413:412,1:412:14762:1:36:0,-120.727,-1323.1	0/0:154:154,0:154:5517:0:0:0,-46.3586,-496.649	0/0:207:207,0:207:7428:0:0:0,-62.3132,-668.557	0/0:365:365,0:365:13102:0:0:0,-109.876,-1178.78	0/1:260:113,147:113:4041:147:5198:-389.463,0,-285.6	0/0:92:90,2:90:3210:2:72:0,-20.858,-282.205	0/0:203:203,0:203:7242:0:0:0,-61.1091,-651.808	0/0:168:168,0:168:6016:0:0:0,-50.573,-541.54	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:156:156,0:156:5572:0:0:0,-46.9607,-501.548	0/1:160:114,46:114:4077:46:1628:-98.6168,0,-318.93	0/0:521:521,0:521:18608:0:0:0,-156.837,-1673.98	0/0:373:373,0:373:13310:0:0:0,-112.284,-1197.31	0/0:168:168,0:168:6006:0:0:0,-50.573,-540.58	0/0:287:287,0:287:10296:0:0:0,-86.3956,-926.482	0/0:25:23,2:23:813:2:72:0,-0.689027,-66.6524	0/0:309:306,3:306:10952:3:108:0,-82.9479,-975.477	0/1:185:126,59:126:4502:59:2086:-132.29,0,-349.637	0/0:364:362,2:362:12924:2:72:0,-102.738,-1155.71	0/0:207:207,0:207:7397:0:0:0,-62.3132,-665.755	0/0:179:179,0:179:6416:0:0:0,-53.8844,-577.518	0/1:117:91,26:91:3259:26:932:-48.9465,0,-258.299	0/0:315:315,0:315:11254:0:0:0,-94.8244,-1012.39	0/0:72:72,0:72:2567:0:0:0,-21.6742,-230.94	0/1:129:88,41:88:3109:41:1435:-90.5189,0,-241.202	0/0:157:157,0:157:5644:0:0:0,-47.2617,-507.788	0/1:97:55,42:55:1972:42:1504:-106.311,0,-148.55	0/1:164:106,58:106:3796:58:2067:-136.931,0,-292.455	0/1:110:66,44:66:2368:44:1562:-107.745,0,-180.262	0/0:268:268,0:268:9582:0:0:0,-80.676,-862.151	0/0:277:277,0:277:9878:0:0:0,-83.3853,-888.93
chr08	3686250	.	T	C	23467.1	PASS	AB=0.327478;ABP=1445.32;AC=36;AF=0.191489;AN=188;AO=1860;CIGAR=1X;DP=18351;DPB=18351;DPRA=0.850645;EPP=4041.95;EPPR=35771.5;GTI=7;LEN=1;MEANALT=1.02128;MQM=59.5516;MQMR=59.7982;NS=94;NUMALT=1;ODDS=5.50733;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66166;QR=589742;RO=16488;RPL=1857;RPP=4015.93;RPPR=444.061;RPR=3;RUN=1;SAF=1857;SAP=4015.93;SAR=3;SRF=7325;SRP=447.926;SRR=9163;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:125:125,0:125:4472:0:0:0,-37.6287,-402.65	0/0:357:357,0:357:12795:0:0:0,-107.468,-1151.18	0/1:291:171,120:171:6125:120:4286:-298.284,0,-463.724	0/0:504:502,2:502:17948:2:72:0,-144.882,-1607.52	0/1:50:31,19:31:1116:19:680:-46.4777,0,-85.7002	0/1:75:56,19:56:2004:19:671:-38.1304,0,-158.056	0/0:226:226,0:226:8075:0:0:0,-68.0328,-725.958	0/0:345:345,0:345:12348:0:0:0,-103.855,-1110.95	0/0:249:249,0:249:8903:0:0:0,-74.9565,-801.011	0/0:283:282,0:282:10084:0:0:0,-84.8905,-907.167	0/0:122:122,0:122:4354:0:0:0,-36.7257,-392.032	0/0:206:206,0:206:7355:0:0:0,-62.0122,-661.973	0/0:183:183,0:183:6555:0:0:0,-55.0885,-590.008	0/0:172:171,0:171:6139:0:0:0,-51.4761,-552.233	0/0:184:184,0:184:6595:0:0:0,-55.3895,-593.619	0/0:175:175,0:175:6243:0:0:0,-52.6802,-561.932	0/0:158:158,0:158:5668:0:0:0,-47.5627,-509.935	0/0:141:141,0:141:5040:0:0:0,-42.4452,-453.515	0/0:87:87,0:87:3093:0:0:0,-26.1896,-278.556	0/0:360:359,1:359:12892:1:32:0,-105.171,-1156.87	0/0:420:420,0:420:14987:0:0:0,-126.433,-1348.51	0/1:56:20,36:20:720:36:1284:-98.992,0,-48.2702	0/0:243:243,0:243:8692:0:0:0,-73.1503,-782.25	0/1:152:120,32:120:4272:32:1123:-55.4526,0,-338.886	0/0:182:182,0:182:6524:0:0:0,-54.7875,-586.735	0/1:397:292,105:292:10455:105:3751:-218.232,0,-821.253	0/1:386:244,142:244:8727:142:5071:-340.338,0,-669.198	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.783	0/0:470:470,0:470:16833:0:0:0,-141.484,-1514.2	0/0:272:258,14:258:9252:14:500:0,-36.544,-787.276	0/1:175:127,48:127:4520:48:1712:-101.684,0,-354.111	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.39593	0/0:34:31,3:31:1108:3:108:0,-0.15985,-89.9558	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.798	0/0:390:390,0:390:13914:0:0:0,-117.402,-1252.02	0/1:175:126,49:126:4524:49:1747:-104.829,0,-354.641	0/1:98:83,15:83:2972:15:540:-19.4179,0,-238.014	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:246:196,50:196:6997:50:1796:-87.8505,0,-555.718	0/1:59:32,27:32:1131:27:968:-69.6582,0,-84.3324	0/1:303:176,127:176:6284:127:4513:-315.056,0,-474.366	0/1:130:87,43:87:3115:43:1544:-99.7897,0,-241.433	0/0:158:157,1:157:5623:1:36:0,-43.9645,-502.589	0/1:227:153,74:153:5450:74:2651:-170.494,0,-422.133	0/1:239:172,67:172:6154:67:2383:-142.749,0,-481.931	0/1:307:224,83:224:8035:83:2971:-175.187,0,-630.106	0/0:222:222,0:222:7935:0:0:0,-66.8287,-714.173	0/0:351:351,0:351:12571:0:0:0,-105.662,-1131.17	0/0:272:272,0:272:9728:0:0:0,-81.8802,-875.445	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7435	0/1:239:167,72:167:5976:72:2579:-160.38,0,-465.976	0/1:98:68,30:68:2429:30:1035:-63.954,0,-189.362	0/1:20:14,6:14:504:6:207:-12.9463,0,-39.6775	0/1:269:200,69:200:7139:69:2455:-140.221,0,-561.58	0/1:86:47,39:47:1671:39:1377:-98.2783,0,-124.738	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2902	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.2973	0/0:207:207,0:207:7372:0:0:0,-62.3132,-663.506	0/0:201:198,3:198:7060:3:108:0,-50.4319,-625.288	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:215:141,74:141:5055:74:2624:-171.636,0,-390.361	0/0:409:408,1:408:14606:1:36:0,-119.523,-1309.39	0/0:153:153,0:153:5500:0:0:0,-46.0576,-495.119	0/0:205:205,0:205:7355:0:0:0,-61.7111,-661.988	0/0:370:370,0:370:13228:0:0:0,-111.381,-1190.12	0/1:261:115,146:115:4119:146:5178:-387.28,0,-292.317	0/0:92:90,2:90:3232:2:72:0,-20.858,-284.181	0/0:203:203,0:203:7272:0:0:0,-61.1091,-654.512	0/0:168:168,0:168:6009:0:0:0,-50.573,-540.908	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:153:152,1:152:5403:1:36:0,-42.4593,-482.78	0/1:161:114,47:114:4091:47:1667:-101.826,0,-319.884	0/0:527:527,0:527:18816:0:0:0,-158.643,-1692.81	0/0:370:370,0:370:13207:0:0:0,-111.381,-1188.1	0/0:164:164,0:164:5862:0:0:0,-49.3689,-527.626	0/0:287:287,0:287:10239:0:0:0,-86.3956,-921.363	0/1:22:20,2:20:720:2:72:-0.214063,0,-58.5061	0/0:310:307,3:307:10986:3:108:0,-83.2489,-978.549	0/1:189:129,59:129:4604:59:2095:-131.858,0,-357.551	0/0:363:361,2:361:12913:2:63:0,-103.291,-1155.58	0/0:209:209,0:209:7500:0:0:0,-62.9153,-675.021	0/0:179:179,0:179:6391:0:0:0,-53.8844,-575.268	0/1:121:94,27:94:3364:27:956:-49.893,0,-266.541	0/0:312:312,0:312:11138:0:0:0,-93.9214,-1001.99	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.781	0/1:129:88,41:88:3143:41:1443:-91.1994,0,-244.259	0/0:154:154,0:154:5536:0:0:0,-46.3586,-498.072	0/1:97:55,42:55:1968:42:1474:-103.612,0,-148.195	0/1:162:106,56:106:3788:56:1990:-130.606,0,-292.335	0/1:113:68,45:68:2427:45:1580:-108.456,0,-184.667	0/0:272:272,0:272:9740:0:0:0,-81.8802,-876.507	0/0:286:286,0:286:10232:0:0:0,-86.0946,-920.447
chr08	3686880	.	A	G	13017.4	PASS	AB=0.595408;ABP=102.869;AC=36;AF=0.191489;AN=188;AO=762;CIGAR=1X;DP=3069;DPB=3069;DPRA=1.22498;EPP=1657.67;EPPR=5008.25;GTI=3;LEN=1;MEANALT=1.05;MQM=59.9895;MQMR=59.9783;NS=94;NUMALT=1;ODDS=1.15545;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27188;QR=80716;RO=2305;RPL=762;RPP=1657.67;RPPR=5008.25;RPR=0;RUN=1;SAF=762;SAP=1657.67;SAR=0;SRF=2305;SRP=5008.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8032	0/0:38:37,1:37:1299:1:36:0,-7.84086,-113.612	0/1:62:19,43:19:672:43:1535:-119.778,0,-42.143	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:53:53,0:53:1862:0:0:0,-15.9546,-167.858	0/0:46:46,0:46:1628:0:0:0,-13.8474,-146.809	0/0:44:44,0:44:1525:0:0:0,-13.2453,-137.54	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:31:31,0:31:1088:0:0:0,-9.33193,-98.2292	0/0:27:27,0:27:948:0:0:0,-8.12781,-85.6346	0/0:25:25,0:25:863:0:0:0,-7.52575,-77.976	0/0:19:19,0:19:646:0:0:0,-5.71957,-58.4578	0/0:24:24,0:24:839:0:0:0,-7.22472,-75.8273	0/0:23:23,0:23:781:0:0:0,-6.92369,-70.6025	0/0:29:29,0:29:1007:0:0:0,-8.72987,-90.94	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:31:31,0:31:1077:0:0:0,-9.33193,-97.2362	0/0:25:25,0:25:880:0:0:0,-7.52575,-79.5177	0/1:36:16,20:16:560:20:720:-54.2917,0,-39.8917	0/0:35:35,0:35:1223:0:0:0,-10.536,-110.373	0/1:55:26,29:26:924:29:1033:-76.7258,0,-66.921	0/0:17:17,0:17:592:0:0:0,-5.11751,-53.6064	0/1:95:40,55:40:1412:55:1944:-146.636,0,-98.7794	0/1:62:24,38:24:856:38:1351:-103.226,0,-58.6972	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:49:49,0:49:1717:0:0:0,-14.7505,-154.813	0/0:45:43,2:43:1517:2:72:0,-6.70963,-129.984	0/1:50:20,30:20:696:30:1072:-81.741,0,-47.9066	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:78:78,0:78:2738:0:0:0,-23.4803,-246.665	0/1:57:20,37:20:704:37:1312:-101.223,0,-46.5176	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:47:17,30:17:592:30:1076:-83.0044,0,-39.458	0/1:13:6,7:6:204:7:252:-19.1156,0,-14.78	0/1:58:22,36:22:763:36:1289:-98.8535,0,-51.5288	0/1:19:7,12:7:244:12:432:-33.5016,0,-16.5799	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	0/1:32:16,16:16:564:16:572:-42.1805,0,-41.4573	0/1:57:26,31:26:908:31:1099:-82.0607,0,-64.8765	0/0:49:48,1:48:1696:1:36:0,-11.1522,-149.328	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:44:44,0:44:1536:0:0:0,-13.2453,-138.532	0/1:7:4,3:4:140:3:104:-7.5956,0,-10.8374	0/1:67:25,42:25:863:42:1512:-116.206,0,-57.8151	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:46:19,26:19:659:26:907:-68.0378,0,-45.6204	0/1:35:22,13:22:768:13:464:-31.5615,0,-58.9043	0/0:10:10,0:10:343:0:0:0,-3.0103,-31.2006	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/0:35:35,0:35:1234:0:0:0,-10.536,-111.363	0/0:62:62,0:62:2198:0:0:0,-18.6639,-198.085	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:61:32,29:32:1124:29:1040:-75.5515,0,-83.1051	0/0:69:69,0:69:2439:0:0:0,-20.7711,-219.766	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:20:20,0:20:704:0:0:0,-6.0206,-63.6845	0/0:44:44,0:44:1532:0:0:0,-13.2453,-138.169	0/1:63:18,45:18:621:45:1620:-127.125,0,-37.2463	0/0:9:9,0:9:302:0:0:0,-2.70927,-27.5051	0/0:33:33,0:33:1160:0:0:0,-9.93399,-104.707	0/0:51:51,0:51:1778:0:0:0,-15.3525,-160.301	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:30:30,0:30:1034:0:0:0,-9.0309,-93.3672	0/1:25:14,11:14:496:11:396:-28.457,0,-37.4485	0/0:54:54,0:54:1881:0:0:0,-16.2556,-169.564	0/0:39:39,0:39:1348:0:0:0,-11.7402,-121.615	0/0:36:33,3:33:1156:3:108:0,-0.76191,-94.2712	0/0:27:25,1:25:880:1:36:0,-4.54341,-75.9612	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:30:30,0:30:1056:0:0:0,-9.0309,-95.3509	0/1:54:13,41:13:448:41:1472:-116.521,0,-24.3933	0/0:64:64,0:64:2235:0:0:0,-19.2659,-201.412	0/0:69:69,0:69:2426:0:0:0,-20.7711,-218.596	0/0:15:15,0:15:523:0:0:0,-4.51545,-47.3985	0/1:36:13,23:13:456:23:816:-62.9246,0,-30.5362	0/0:45:45,0:45:1521:0:0:0,-13.5463,-137.176	0/0:30:30,0:30:1060:0:0:0,-9.0309,-95.7113	0/1:38:13,25:13:451:25:870:-67.1751,0,-29.4807	0/0:24:24,0:24:829:0:0:0,-7.22472,-74.9223	0/1:14:2,12:2:68:12:424:-34.282,0,-2.24329	0/1:41:21,20:21:706:20:712:-52.0562,0,-51.5087	0/1:34:9,25:9:320:25:900:-71.086,0,-18.9073	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/0:34:34,0:34:1174:0:0:0,-10.235,-105.963
chr08	3700575	.	C	T	298273	PASS	AB=0.501856;ABP=3.15536;AC=153;AF=0.81383;AN=188;AO=11021;CIGAR=1X;DP=13468;DPB=13468;DPRA=0;EPP=23813.4;EPPR=5197.77;GTI=1;LEN=1;MEANALT=1.03191;MQM=50.3199;MQMR=58.2942;NS=94;NUMALT=1;ODDS=1.8507;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=393619;QR=87222;RO=2444;RPL=6734;RPP=1182.79;RPPR=380.711;RPR=4287;RUN=1;SAF=6748;SAP=1209.94;SAR=4273;SRF=1561;SRP=411.435;SRR=883;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1290:-112.784,-10.8371,0	1/1:125:0,125:0:0:125:4473:-390.747,-37.6288,0	0/1:106:64,42:64:2291:42:1511:-99.5993,0,-173.199	1/1:421:0,421:0:0:421:15011:-1336.03,-126.734,0	0/1:17:5,12:5:176:12:424:-33.0966,0,-11.0657	0/1:13:6,7:6:216:7:252:-17.9554,0,-15.8628	1/1:171:1,170:1:36:170:6065:-538.059,-47.8779,0	1/1:147:0,147:0:0:147:5265:-454.326,-44.2514,0	1/1:100:0,100:0:0:100:3580:-309.685,-30.103,0	1/1:198:0,198:0:0:198:7047:-626.381,-59.6039,0	1/1:103:0,103:0:0:103:3676:-327.525,-31.0061,0	1/1:100:1,99:1:36:99:3511:-301.307,-26.5047,0	1/1:91:0,91:0:0:91:3257:-284.281,-27.3937,0	1/1:149:0,149:0:0:149:5320:-470.023,-44.8535,0	1/1:206:0,206:0:0:206:7364:-657.003,-62.0122,0	1/1:129:0,129:0:0:129:4611:-409.841,-38.8329,0	1/1:102:1,101:1:36:101:3632:-310.679,-27.1068,0	1/1:64:0,64:0:0:64:2262:-196.543,-19.2659,0	1/1:41:0,41:0:0:41:1468:-128.601,-12.3422,0	1/1:360:0,360:0:0:360:12839:-1147.94,-108.371,0	1/1:235:0,235:0:0:235:8411:-749.838,-70.7421,0	0/1:58:47,11:47:1671:11:385:-17.2062,0,-133.098	1/1:122:0,122:0:0:122:4330:-387.331,-36.7257,0	0/1:151:56,95:56:1977:95:3391:-256.052,0,-132.726	1/1:144:0,144:0:0:144:5162:-458.263,-43.3483,0	0/1:542:272,270:272:9700:270:9593:-695.239,0,-709.253	0/1:417:202,215:202:7197:215:7672:-556.302,0,-521.837	1/1:81:0,81:0:0:81:2889:-256.835,-24.3834,0	1/1:425:3,422:3:108:422:15109:-1338.94,-117.863,0	1/1:184:12,172:12:432:172:6155:-506.716,-16.1765,0	0/1:273:133,140:133:4717:140:4995:-361.527,0,-342.295	0/1:8:1,7:1:36:7:252:-20.5639,0,-1.19003	1/1:16:0,16:0:0:16:568:-51.068,-4.81648,0	0/1:6:4,2:4:144:2:72:-4.84895,0,-11.4978	1/1:11:0,11:0:0:11:392:-34.7142,-3.31133,0	1/1:6:0,6:0:0:6:216:-19.2648,-1.80618,0	1/1:390:0,390:0:0:390:13948:-1246.92,-117.402,0	0/1:150:74,76:74:2656:76:2732:-197.803,0,-194.009	0/1:53:31,22:31:1108:22:792:-52.9436,0,-82.7378	1/1:5:0,5:0:0:5:180:-15.9946,-1.50515,0	0/1:258:124,133:124:4412:133:4756:-342.519,0,-319.48	0/1:66:29,37:29:1036:37:1308:-97.1193,0,-73.6493	0/1:133:44,88:44:1584:88:3152:-239.948,0,-102.602	0/1:155:73,82:73:2620:82:2913:-214.066,0,-188.878	1/1:167:0,167:0:0:167:5956:-531.606,-50.272,0	0/1:95:35,60:35:1256:60:2133:-162.734,0,-84.6892	0/1:105:46,59:46:1640:59:2111:-151.712,0,-114.791	0/1:297:167,130:167:5968:130:4657:-324.049,0,-447.56	1/1:185:0,185:0:0:185:6572:-587.281,-55.6906,0	1/1:196:0,196:0:0:196:7019:-623.419,-59.0019,0	1/1:127:0,127:0:0:127:4543:-405.772,-38.2308,0	0/1:10:3,7:3:108:7:252:-19.7649,0,-7.06487	0/1:84:50,34:50:1792:34:1216:-79.802,0,-135.951	0/1:78:32,46:32:1140:46:1648:-122.958,0,-79.4289	1/1:1:0,1:0:0:1:36:-3.5027,-0.30103,0	0/1:220:98,122:98:3483:122:4373:-321.301,0,-246.855	0/1:71:28,43:28:982:43:1536:-116.324,0,-67.3185	1/1:8:0,8:0:0:8:288:-26.1767,-2.40824,0	0/1:10:2,8:2:72:8:279:-22.3919,0,-3.82642	1/1:136:0,136:0:0:136:4860:-432.823,-40.9401,0	1/1:159:0,159:0:0:159:5678:-507.831,-47.8638,0	1/1:6:0,6:0:0:6:216:-19.6087,-1.80618,0	0/1:410:192,218:192:6874:218:7823:-576.778,0,-493.526	1/1:248:0,248:0:0:248:8863:-790.523,-74.6554,0	1/1:95:0,95:0:0:95:3393:-299.688,-28.5979,0	1/1:156:0,156:0:0:156:5589:-497.554,-46.9607,0	1/1:279:2,277:2:72:277:9905:-875.837,-77.1506,0	0/1:181:127,54:127:4538:54:1936:-119.065,0,-353.924	1/1:59:4,55:4:144:55:1980:-162.036,-4.44901,0	1/1:59:0,59:0:0:59:2111:-183.798,-17.7608,0	1/1:140:0,140:0:0:140:4975:-444.862,-42.1442,0	1/1:44:0,44:0:0:44:1559:-139.72,-13.2453,0	1/1:42:0,42:0:0:42:1496:-130.659,-12.6433,0	0/1:61:30,31:30:1072:31:1103:-76.0116,0,-77.1765	1/1:243:0,243:0:0:243:8697:-768.878,-73.1503,0	1/1:196:1,195:1:36:195:6941:-615.154,-55.4036,0	1/1:43:0,43:0:0:43:1536:-134.163,-12.9443,0	1/1:129:0,129:0:0:129:4621:-401.939,-38.8329,0	0/1:5:4,1:4:144:1:36:-1.99755,0,-11.7989	1/1:143:3,140:3:108:140:5004:-434.019,-32.9721,0	0/1:183:98,84:98:3508:84:3020:-207.651,0,-260.282	1/1:344:0,344:0:0:344:12282:-1094.96,-103.554,0	1/1:162:1,161:1:36:161:5723:-504.899,-45.1686,0	1/1:156:0,156:0:0:156:5536:-495.159,-46.9607,0	0/1:156:74,82:74:2648:82:2944:-215.656,0,-191.565	1/1:296:0,296:0:0:296:10521:-939.912,-89.1049,0	1/1:42:1,41:1:36:41:1472:-124.952,-9.04758,0	0/1:74:40,34:40:1427:34:1211:-83.64,0,-105.855	1/1:83:0,83:0:0:83:2980:-258.778,-24.9855,0	0/1:84:37,47:37:1324:47:1684:-123.918,0,-94.1004	0/1:141:67,74:67:2383:74:2644:-191.663,0,-172.06	0/1:179:118,61:118:4206:61:2183:-141.144,0,-324.143	1/1:254:0,254:0:0:254:9063:-809.429,-76.4616,0	1/1:258:1,257:1:36:257:9184:-816.105,-74.0675,0
chr08	3750834	.	ACGTTTC	ACGCTTA,ACGCTTC	133009	PASS	AB=0.496989,0.492821;ABP=3.18028,3.97685;AC=151,35;AF=0.811828,0.188172;AN=186;AO=4995,1080;CIGAR=3M1X2M1X,3M1X3M;DP=6130;DPB=6138;DPRA=5.54167,1.05724;EPP=10539.1,2339.52;EPPR=0;GTI=2;LEN=7,1;MEANALT=1.91304,2.45946;MQM=59.8028,59.9824;MQMR=0;NS=93;NUMALT=2;ODDS=1.28894;PAIRED=0,0;PAIREDR=0;PAO=28,0;PQA=958.5,0;PQR=0;PRO=0;QA=175935,38531;QR=0;RO=0;RPL=36,1;RPP=10539.1,2339.52;RPPR=0;RPR=4959,1079;RUN=1,1;SAF=4995,1080;SAP=10849.5,2348.2;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:72:0,72,0:0:0:72,0:2528,0:-227.362,-21.6742,0,-227.362,-21.6742,-227.362	1/1:75:0,74,0:0:0:74,0:2621,0:-235.806,-22.2762,0,-235.806,-22.2762,-235.806	1/2:94:0,49,43:0:0:49,43:1744,1548:-268.436,-126.301,-111.55,-142.134,0,-129.189	1/1:97:0,97,0:0:0:97,0:3418,0:-307.777,-29.1999,0,-307.777,-29.1999,-307.777	1/2:45:0,23,22:0:0:23,22:802,792:-130.202,-64.983,-58.0593,-65.5735,0,-58.9508	1/2:48:0,25,23:0:0:25,23:889,828:-140.359,-67.9204,-60.3947,-72.7963,0,-65.8726	1/1:73:0,73,0:0:0:73,0:2589,0:-233.2,-21.9752,0,-233.2,-21.9752,-233.2	1/1:116:0,116,0:0:0:116,0:4126,0:-371.506,-34.9195,0,-371.506,-34.9195,-371.506	1/1:87:0,87,0:0:0:87,0:3059,0:-275.527,-26.1896,0,-275.527,-26.1896,-275.527	1/1:59:0,59,0:0:0:59,0:2046,0:-184.409,-17.7608,0,-184.409,-17.7608,-184.409	1/1:82:0,81,0:0:0:81,0:2883,0:-259.288,-24.3834,0,-259.288,-24.3834,-259.288	1/1:104:0,102,0:0:0:102,0:3591,0:-323.033,-30.7051,0,-323.033,-30.7051,-323.033	1/1:85:0,85,0:0:0:85,0:2987,0:-269.056,-25.5876,0,-269.056,-25.5876,-269.056	1/1:87:0,87,0:0:0:87,0:3061,0:-275.72,-26.1896,0,-275.72,-26.1896,-275.72	1/1:81:0,80,0:0:0:80,0:2859,0:-257.01,-24.0824,0,-257.01,-24.0824,-257.01	1/1:77:0,77,0:0:0:77,0:2723,0:-245.314,-23.1793,0,-245.314,-23.1793,-245.314	1/1:31:0,29,0:0:0:29,0:1034,0:-93.0137,-8.72987,0,-93.0137,-8.72987,-93.0137	1/1:39:0,39,0:0:0:39,0:1380,0:-124.437,-11.7402,0,-124.437,-11.7402,-124.437	1/1:35:0,35,0:0:0:35,0:1238,0:-111.707,-10.5361,0,-111.707,-10.5361,-111.707	1/1:47:0,46,0:0:0:46,0:1622,0:-145.554,-13.8474,0,-145.554,-13.8474,-145.554	1/1:112:0,111,0:0:0:111,0:3869,0:-347.815,-33.4143,0,-347.815,-33.4143,-347.815	1/2:27:0,3,23:0:0:3,23:104,816:-74.9307,-66.4784,-65.5753,-8.44321,0,-1.51952	1/1:70:0,68,0:0:0:68,0:2400,0:-215.809,-20.47,0,-215.809,-20.47,-215.809	1/2:50:0,32,18:0:0:32,18:1138,629:-144.259,-51.5154,-41.8825,-93.0951,0,-87.6765	1/1:51:0,51,0:0:0:51,0:1802,0:-162.459,-15.3525,0,-162.459,-15.3525,-162.459	1/2:134:0,88,46:0:0:88,46:3075,1640:-384.164,-134.041,-107.551,-250.477,0,-236.629	1/2:125:0,70,54:0:0:70,54:2454,1924:-356.438,-156.761,-135.689,-199.613,0,-183.357	1/1:43:0,43,0:0:0:43,0:1522,0:-137.272,-12.9443,0,-137.272,-12.9443,-137.272	1/1:120:0,118,0:0:0:118,0:4168,0:-374.898,-35.5215,0,-374.898,-35.5215,-374.898	1/1:72:0,72,0:0:0:72,0:2505,0:-225.641,-21.6742,0,-225.641,-21.6742,-225.641	1/2:90:0,35,53:0:0:35,53:1219,1904:-254.522,-155.401,-144.865,-99.1889,0,-83.2343	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:3:0,3,0:0:0:3,0:100,0:-9.33012,-0.90309,0,-9.33012,-0.90309,-9.33012	.:.:.:.:.:.:.:.	1/1:6:0,6,0:0:0:6,0:208,0:-19.0585,-1.80618,0,-19.0585,-1.80618,-19.0585	1/1:4:0,4,0:0:0:4,0:130,0:-12.0194,-1.20412,0,-12.0194,-1.20412,-12.0194	1/1:167:0,166,0:0:0:166,0:5863,0:-526.987,-49.971,0,-526.987,-49.971,-526.987	1/2:41:0,19,22:0:0:19,22:660,792:-118.631,-64.983,-59.2634,-54.0015,0,-47.3789	1/2:48:0,25,23:0:0:25,23:884,828:-139.914,-67.9204,-60.3947,-72.3501,0,-65.4264	1/1:3:0,3,0:0:0:3,0:101,0:-9.42219,-0.90309,0,-9.42219,-0.90309,-9.42219	1/2:71:0,39,32:0:0:39,32:1342,1140:-202.26,-93.2762,-81.5361,-109.334,0,-99.7011	1/2:36:0,18,18:0:0:18,18:648,648:-106.104,-53.2333,-47.8148,-53.2306,0,-47.8121	1/2:123:0,66,55:0:0:66,55:2324,1967:-349.576,-160.383,-140.515,-189.184,0,-172.627	1/2:63:0,37,25:0:0:37,25:1238,883:-172.128,-71.9021,-60.764,-100.213,0,-92.6868	1/1:71:0,69,0:0:0:69,0:2423,0:-218.03,-20.7711,0,-218.03,-20.7711,-218.03	1/2:90:0,45,45:0:0:45,45:1575,1612:-259.961,-131.823,-118.276,-128.492,0,-114.946	1/2:73:0,38,34:0:0:38,34:1343,1202:-207.262,-97.8896,-86.4504,-109.366,0,-99.1307	1/2:75:0,40,35:0:0:40,35:1411,1235:-215.809,-100.917,-88.8762,-115.245,0,-104.709	1/1:62:0,62,0:0:0:62,0:2218,0:-199.826,-18.6639,0,-199.826,-18.6639,-199.826	1/1:55:0,54,0:0:0:54,0:1902,0:-171.147,-16.2556,0,-171.147,-16.2556,-171.147	1/1:60:0,59,0:0:0:59,0:2116,0:-190.23,-17.7608,0,-190.23,-17.7608,-190.23	1/2:9:0,5,4:0:0:5,4:180,144:-26.7966,-12.1095,-10.6043,-15.0469,0,-13.8428	1/2:69:0,36,33:0:0:36,33:1255,1188:-199.351,-97.2946,-86.4575,-102.411,0,-92.4767	1/2:41:0,16,25:0:0:16,25:561,879:-117.495,-71.8465,-67.03,-45.9474,0,-38.4216	1/2:6:0,5,1:0:0:5,1:173,36:-17.3439,-3.29724,-1.79209,-14.4042,0,-14.1032	1/2:68:0,42,26:0:0:42,26:1479,928:-196.416,-76.0115,-63.3682,-120.76,0,-112.933	1/2:32:0,17,15:0:0:17,15:607,536:-93.5467,-44.0594,-38.9419,-49.8444,0,-45.329	1/1:11:0,11,0:0:0:11,0:385,0:-34.9845,-3.31133,0,-34.9845,-3.31133,-34.9845	2/2:12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chr08	3780039	.	C	T	25151.5	PASS	AB=0.535413;ABP=32.6929;AC=37;AF=0.196809;AN=188;AO=1470;CIGAR=1X;DP=7442;DPB=7442;DPRA=1.04036;EPP=3195.07;EPPR=12960.2;GTI=1;LEN=1;MEANALT=1.075;MQM=59.4388;MQMR=59.9814;NS=94;NUMALT=1;ODDS=3.43756;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52646;QR=213585;RO=5967;RPL=0;RPP=3195.07;RPPR=12960.2;RPR=1470;RUN=1;SAF=1470;SAP=3195.07;SAR=0;SRF=5967;SRP=12960.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:123:123,0:123:4399:0:0:0,-37.0267,-396.083	0/1:140:58,82:58:2088:82:2944:-222.347,0,-146.046	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.48	0/1:93:42,51:42:1504:51:1828:-136.713,0,-107.659	0/1:95:48,47:48:1716:47:1684:-123.233,0,-126.128	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.228	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.747	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.728	0/0:92:92,0:92:3279:0:0:0,-27.6948,-295.33	0/0:85:85,0:85:3030:0:0:0,-25.5875,-272.93	0/0:123:123,0:123:4398:0:0:0,-37.0267,-395.992	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:91:91,0:91:3244:0:0:0,-27.3937,-292.183	0/0:120:120,0:120:4292:0:0:0,-36.1236,-386.458	0/1:49:16,33:16:576:33:1184:-92.1166,0,-37.4245	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:96:61,34:61:2180:34:1212:-80.4241,0,-167.509	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:203:99,104:99:3544:104:3740:-275.627,0,-258.06	0/1:171:83,88:83:2972:88:3156:-231.97,0,-216.237	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:197:197,0:197:7064:0:0:0,-59.3029,-635.802	0/0:78:76,2:76:2684:2:72:0,-16.6436,-234.968	0/1:93:57,36:57:2028:36:1284:-87.8606,0,-154.797	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:185:184,0:184:6597:0:0:0,-55.3895,-593.447	0/1:79:32,47:32:1129:47:1692:-128.757,0,-78.135	0/1:85:36,48:36:1296:48:1715:-128.924,0,-91.2976	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:97:42,55:42:1500:55:1968:-148.181,0,-106.095	0/1:31:13,18:13:468:18:644:-48.954,0,-33.1277	0/1:107:51,55:51:1832:55:1976:-145.836,0,-132.892	0/1:66:41,25:41:1472:25:896:-61.09,0,-112.908	0/0:70:70,0:70:2520:0:0:0,-21.0721,-226.423	0/1:81:40,41:40:1440:41:1446:-106.047,0,-105.514	0/1:68:27,41:27:956:41:1468:-111.944,0,-65.8857	0/1:98:39,59:39:1379:59:2093:-159.135,0,-94.9047	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:110:110,0:110:3932:0:0:0,-33.1133,-354.073	0/0:110:110,0:110:3921:0:0:0,-33.1133,-353.083	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:100:53,47:53:1896:47:1684:-121.741,0,-140.815	0/1:24:13,11:13:464:11:392:-28.3388,0,-34.8728	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:99:47,52:47:1688:52:1868:-138.58,0,-122.405	0/1:25:14,11:14:500:11:396:-28.4523,0,-37.8104	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:24:16,8:16:576:8:288:-19.0427,0,-44.9503	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:134:129,5:129:4640:5:180:0,-23.786,-401.208	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:93:34,59:34:1216:59:2120:-163.07,0,-81.7508	0/0:151:151,0:151:5412:0:0:0,-45.4555,-487.209	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/0:108:107,1:107:3840:1:36:0,-28.913,-342.197	0/1:114:30,84:30:1080:84:3020:-236.892,0,-63.1935	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:102:102,0:102:3655:0:0:0,-30.7051,-329.153	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/1:89:42,47:42:1508:47:1680:-124.525,0,-109.223	0/0:194:194,0:194:6968:0:0:0,-58.3998,-627.182	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.317	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:83:32,51:32:1133:51:1824:-138.458,0,-77.2903	0/0:193:191,2:191:6828:2:72:0,-51.2621,-607.752	0/0:114:113,0:113:4030:0:0:0,-34.0164,-362.528	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:117:47,70:47:1679:70:2512:-191.111,0,-116.176	0/0:168:168,0:168:5996:0:0:0,-50.573,-539.743	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:70:36,34:36:1292:34:1220:-89.0347,0,-95.5117	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/1:37:22,15:22:792:15:540:-37.7892,0,-60.4676	0/1:109:55,54:55:1972:54:1927:-140.835,0,-144.813	0/1:67:25,42:25:896:42:1489:-114.131,0,-60.7913	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:124:124,0:124:4443:0:0:0,-37.3277,-400.04
chr08	3780054	.	T	C	46598.1	PASS	AB=0.543284;ABP=65.0442;AC=37;AF=0.196809;AN=188;AO=2087;CIGAR=1X;DP=11432;DPB=11432;DPRA=1.12726;EPP=770.757;EPPR=1364.57;GTI=1;LEN=1;MEANALT=1.06818;MQM=59.6061;MQMR=59.9791;NS=94;NUMALT=1;ODDS=1.88841;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74358;QR=334563;RO=9340;RPL=0;RPP=4534.87;RPPR=19990.3;RPR=2087;RUN=1;SAF=1473;SAP=770.757;SAR=614;SRF=5914;SRP=1442.17;SRR=3426;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:40,0:40:1432:0:0:0,-12.0412,-128.935	0/0:121:121,0:121:4330:0:0:0,-36.4246,-389.874	0/1:139:56,83:56:2012:83:2950:-223.192,0,-139.51	0/0:312:312,0:312:11158:0:0:0,-93.9214,-1004.06	0/1:92:42,50:42:1500:50:1774:-132.167,0,-107.6	0/1:97:50,47:50:1800:47:1667:-121.105,0,-133.082	0/0:231:231,0:231:8296:0:0:0,-69.5379,-746.645	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:80:80,0:80:2851:0:0:0,-24.0824,-256.82	0/0:160:160,0:160:5722:0:0:0,-48.1648,-515.094	0/0:185:185,0:185:6636:0:0:0,-55.6905,-597.312	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.611	0/0:167:167,0:167:5987:0:0:0,-50.272,-538.934	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:248:247,1:247:8852:1:32:0,-71.4561,-793.465	0/0:117:117,0:117:4177:0:0:0,-35.2205,-376.111	0/1:107:34,72:34:1216:72:2556:-198.02,0,-77.4776	0/0:95:95,0:95:3420:0:0:0,-28.5978,-308.012	0/1:95:61,34:61:2180:34:1216:-81.1441,0,-167.868	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:427:219,207:219:7846:207:7351:-533.124,0,-577.656	0/1:172:83,89:83:2984:89:3159:-232.657,0,-217.014	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:401:401,0:401:14334:0:0:0,-120.713,-1289.81	0/0:80:78,2:78:2792:2:72:0,-17.2457,-244.684	0/1:191:102,89:102:3660:89:3179:-228.832,0,-272.106	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:411:411,0:411:14712:0:0:0,-123.723,-1323.82	0/1:79:31,48:31:1116:48:1709:-130.301,0,-76.9703	0/1:83:35,48:35:1256:48:1703:-128.51,0,-88.3598	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:99:42,57:42:1500:57:2028:-152.973,0,-105.493	0/1:31:13,18:13:468:18:648:-49.3153,0,-33.1277	0/1:105:51,54:51:1827:54:1935:-142.807,0,-133.102	0/1:139:80,59:80:2876:59:2116:-148.863,0,-217.233	0/0:122:121,0:121:4340:0:0:0,-36.4246,-390.568	0/1:136:61,75:61:2183:75:2674:-199.962,0,-155.795	0/1:70:27,43:27:972:43:1519:-115.928,0,-66.7258	0/1:199:72,127:72:2576:127:4535:-348.404,0,-172.185	0/0:120:120,0:120:4303:0:0:0,-36.1236,-387.445	0/0:251:251,0:251:8951:0:0:0,-75.5585,-805.574	0/0:207:206,1:206:7367:1:36:0,-58.7149,-659.48	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:100:53,47:53:1904:47:1660:-119.574,0,-141.535	0/1:57:30,27:30:1080:27:972:-70.5821,0,-80.3545	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:100:46,54:46:1648:54:1921:-143.053,0,-118.506	0/1:64:26,38:26:924:38:1343:-101.899,0,-64.2117	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4958	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:268:264,4:264:9472:4:136:0,-68.1005,-839.861	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:198:95,103:95:3395:103:3667:-270.611,0,-246.161	0/0:309:308,1:308:11031:1:36:0,-89.42,-987.896	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:150:150,0:150:5372:0:0:0,-45.1545,-483.609	0/0:216:214,2:214:7662:2:72:0,-58.1858,-682.775	0/1:221:50,171:50:1788:171:6104:-482.621,0,-94.675	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.874	0/0:212:212,0:212:7595:0:0:0,-63.8184,-683.516	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:91:43,48:43:1540:48:1705:-126.242,0,-111.499	0/0:195:195,0:195:6972:0:0:0,-58.7008,-627.543	0/0:178:178,0:178:6384:0:0:0,-53.5833,-574.648	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/1:81:32,48:32:1143:48:1712:-129.237,0,-78.8722	0/0:301:299,2:299:10698:2:68:0,-84.1523,-956.265	0/0:214:214,0:214:7663:0:0:0,-64.4204,-689.701	0/0:160:160,0:160:5732:0:0:0,-48.1648,-515.996	0/1:223:101,122:101:3616:122:4363:-325.714,0,-258.359	0/0:323:323,0:323:11587:0:0:0,-97.2327,-1042.69	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:70:35,35:35:1252:35:1260:-92.6334,0,-91.913	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:37:22,15:22:792:15:540:-37.7892,0,-60.4676	0/1:107:54,53:54:1944:53:1896:-138.663,0,-142.896	0/1:145:58,87:58:2080:87:3108:-236.295,0,-143.81	0/0:164:164,0:164:5864:0:0:0,-49.3689,-527.872	0/0:251:249,2:249:8915:2:72:0,-68.7218,-795.495
chr08	3787403	.	AAATG	CAATG,CAATA	280107	PASS	AB=0.50948,0.487329;ABP=7.16859,10.4395;AC=152,36;AF=0.808511,0.191489;AN=188;AO=10360,2606;CIGAR=1X4M,1X3M1X;DP=13022;DPB=13022.2;DPRA=0,1.24764;EPP=22473.4,5653.18;EPPR=22.5536;GTI=0;LEN=1,5;MEANALT=1.90426,2.47619;MQM=59.5819,51.5188;MQMR=59.3333;NS=94;NUMALT=2;ODDS=1.30913;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=369229,91179;QR=291;RO=9;RPL=10360,2606;RPP=22499.5,5661.87;RPPR=22.5536;RPR=0,0;RUN=1,1;SAF=3,1;SAP=22473.4,5653.18;SAR=10357,2605;SRF=0;SRP=22.5536;SRR=9;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54,0:0:0:54,0:1866,0:-168.147,-16.2556,0,-168.147,-16.2556,-168.147	1/1:235:0,235,0:0:0:235,0:8378,0:-753.418,-70.7421,0,-753.418,-70.7421,-753.418	1/2:187:0,92,95:0:0:92,95:3285,3291:-533.47,-265.826,-238.131,-267.995,0,-239.397	1/1:348:0,346,0:0:0:346,0:12350,0:-1110.76,-104.156,0,-1110.76,-104.156,-1110.76	1/2:119:0,68,50:0:0:68,50:2429,1729:-338.065,-140.026,-119.556,-198.077,0,-183.026	1/2:79:0,40,39:0:0:40,39:1406,1344:-223.075,-108.688,-96.6467,-114.734,0,-102.994	1/1:162:0,161,0:0:0:161,0:5730,0:-515.582,-48.4658,0,-515.582,-48.4658,-515.582	1/1:236:0,236,0:0:0:236,0:8433,0:-758.856,-71.0431,0,-758.856,-71.0431,-758.856	1/1:119:0,117,0:0:0:117,0:4179,0:-375.968,-35.2205,0,-375.968,-35.2205,-375.968	1/1:157:0,156,0:0:0:156,0:5535,0:-497.951,-46.9607,0,-497.951,-46.9607,-497.951	1/1:74:0,74,0:0:0:74,0:2640,0:-237.83,-22.2762,0,-237.83,-22.2762,-237.83	1/1:86:0,86,0:0:0:86,0:3080,0:-277.195,-25.8886,0,-277.195,-25.8886,-277.195	1/1:86:1,85,0:1:36:85,0:3045,0:-270.328,-22.2903,0,-270.629,-25.5876,-273.566	1/1:58:0,58,0:0:0:58,0:2068,0:-186.365,-17.4597,0,-186.365,-17.4597,-186.365	1/1:89:0,89,0:0:0:89,0:3192,0:-287.483,-26.7917,0,-287.483,-26.7917,-287.483	1/1:57:0,56,0:0:0:56,0:2012,0:-180.983,-16.8577,0,-180.983,-16.8577,-180.983	1/1:76:0,76,0:0:0:76,0:2700,0:-243.13,-22.8783,0,-243.13,-22.8783,-243.13	1/1:71:0,69,1:0:0:69,1:2453,33:-220.701,-20.7711,0,-218.042,-18.0571,-217.741	1/1:53:0,53,0:0:0:53,0:1881,0:-169.565,-15.9546,0,-169.565,-15.9546,-169.565	1/1:414:0,413,0:0:0:413,0:14725,0:-1324.14,-124.325,0,-1324.14,-124.325,-1324.14	1/1:214:1,211,1:1:22:211,1:7534,36:-675.586,-61.8751,0,-672.958,-60.555,-674.335	1/2:117:0,49,68:0:0:49,68:1751,2392:-337.073,-194.31,-179.56,-143.117,0,-122.647	1/1:106:0,104,0:0:0:104,0:3712,0:-333.969,-31.3071,0,-333.969,-31.3071,-333.969	1/2:151:0,80,70:0:0:80,70:2847,2446:-429.394,-197.764,-173.682,-231.623,0,-210.551	1/1:103:0,101,1:0:0:101,1:3596,36:-323.524,-30.404,0,-320.594,-27.4202,-320.293	1/2:515:0,283,232:0:0:283,232:10052,8149:-1480.03,-660.975,-575.784,-819.405,0,-749.566	1/2:247:0,132,114:0:0:132,114:4712,3960:-704.943,-320.879,-281.144,-384.214,0,-349.896	1/1:44:0,43,0:0:0:43,0:1529,0:-137.524,-12.9443,0,-137.524,-12.9443,-137.524	1/1:443:0,439,1:0:0:439,1:15674,36:-1409.9,-132.152,0,-1406.97,-129.209,-1406.66	1/1:132:0,128,4:0:0:128,4:4560,143:-410.18,-38.5318,0,-398.551,-26.5463,-397.347	1/2:184:0,91,93:0:0:91,93:3256,3243:-528.515,-263.013,-235.619,-265.855,0,-237.859	1/2:15:0,8,7:0:0:8,7:288,243:-43.5265,-20.0197,-17.6114,-23.8592,0,-21.752	1/1:24:0,24,0:0:0:24,0:848,0:-76.635,-7.22472,0,-76.635,-7.22472,-76.635	1/2:4:0,1,3:0:0:1,3:36,106:-11.8783,-8.93879,-8.63776,-3.29724,0,-2.39415	1/1:13:0,13,0:0:0:13,0:464,0:-42.0621,-3.91339,0,-42.0621,-3.91339,-42.0621	1/1:8:0,8,0:0:0:8,0:273,0:-24.9002,-2.40824,0,-24.9002,-2.40824,-24.9002	1/1:221:1,219,0:1:36:219,0:7807,0:-699.017,-62.988,0,-699.319,-65.9256,-702.256	1/2:288:0,171,116:0:0:171,116:6092,4064:-824.755,-328.231,-276.754,-496.604,0,-461.685	1/2:79:0,37,42:0:0:37,42:1320,1470:-226.366,-118.773,-107.635,-107.945,0,-95.3021	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:628:0,315,309:0:0:315,309:11253,10881:-1799.27,-882.069,-787.244,-917.21,0,-824.191	1/2:47:0,26,21:0:0:26,21:932,745:-136.909,-60.897,-53.0702,-76.3675,0,-70.0458	1/2:107:0,63,42:0:0:63,42:2256,1483:-304.224,-120.348,-101.383,-183.914,0,-171.27	1/2:82:1,39,42:1:36:39,42:1385,1465:-228.115,-115.572,-106.77,-109.898,0,-100.192	1/1:68:1,67,0:1:32:67,0:2360,0:-209.361,-17.2707,0,-209.662,-20.169,-212.24	1/2:136:0,72,63:0:0:72,63:2559,2202:-387.452,-178.921,-157.247,-208.562,0,-189.597	1/2:228:0,114,114:0:0:114,114:4073,3963:-650.904,-318.917,-284.6,-332.337,0,-298.019	1/2:287:0,149,137:0:0:149,137:5294,4768:-817.301,-385.933,-341.08,-431.462,0,-390.221	1/1:150:0,150,0:0:0:150,0:5330,0:-479.823,-45.1545,0,-479.823,-45.1545,-479.823	1/1:263:0,263,0:0:0:263,0:9361,0:-842.389,-79.1709,0,-842.389,-79.1709,-842.389	1/1:100:0,99,0:0:0:99,0:3525,0:-316.872,-29.802,0,-316.872,-29.802,-316.872	1/2:11:0,1,10:0:0:1,10:36,355:-32.0733,-29.1353,-28.8343,-3.29724,0,-0.286945	1/2:297:0,168,129:0:0:168,129:5970,4552:-854.106,-367.776,-317.203,-486.682,0,-447.849	1/2:40:0,23,17:0:0:23,17:824,600:-116.061,-48.8573,-41.9336,-67.5573,0,-62.4398	1/2:22:0,8,14:0:0:8,14:284,500:-63.9393,-40.7989,-38.3906,-23.4951,0,-19.2807	1/2:243:0,130,112:0:0:130,112:4668,3888:-695.737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chr08	3803687	.	G	A	87931	PASS	AB=0.514756;ABP=16.9165;AC=36;AF=0.191489;AN=188;AO=3804;CIGAR=1X;DP=20219;DPB=20219;DPRA=1.1641;EPP=7691.59;EPPR=1471.87;GTI=0;LEN=1;MEANALT=1.11111;MQM=59.9813;MQMR=59.9882;NS=94;NUMALT=1;ODDS=5.65735;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135484;QR=583167;RO=16403;RPL=1534;RPP=312.232;RPPR=35283.7;RPR=2270;RUN=1;SAF=1467;SAP=435.079;SAR=2337;SRF=6497;SRP=1541.47;SRR=9906;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:107:107,0:107:3767:0:0:0,-32.2102,-339.232	0/0:140:140,0:140:4998:0:0:0,-42.1442,-449.968	0/1:314:162,152:162:5780:152:5436:-394.843,0,-425.791	0/0:504:503,0:503:17869:0:0:0,-151.418,-1607.47	0/1:162:59,103:59:2100:103:3668:-281.559,0,-140.503	0/1:71:38,33:38:1364:33:1188:-85.8555,0,-101.684	0/0:274:274,0:274:9739:0:0:0,-82.4822,-876.418	0/0:214:214,0:214:7584:0:0:0,-64.4204,-682.567	0/0:117:117,0:117:4138:0:0:0,-35.2205,-372.605	0/0:285:285,0:285:10091:0:0:0,-85.7935,-908.132	0/0:174:174,0:174:6190:0:0:0,-52.3792,-557.201	0/0:134:134,0:134:4788:0:0:0,-40.338,-431.075	0/0:110:109,0:109:3870:0:0:0,-32.8123,-348.089	0/0:201:201,0:201:7149:0:0:0,-60.507,-643.472	0/0:190:190,0:190:6740:0:0:0,-57.1957,-606.68	0/0:132:132,0:132:4695:0:0:0,-39.736,-422.71	0/0:45:45,0:45:1590:0:0:0,-13.5463,-143.389	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:63:63,0:63:2242:0:0:0,-18.9649,-202.042	0/0:463:462,1:462:16426:1:36:0,-135.779,-1474.42	0/0:412:411,0:411:14648:0:0:0,-123.723,-1317.69	0/1:263:88,175:88:3110:175:6169:-476.142,0,-200.958	0/0:170:170,0:170:6007:0:0:0,-51.1751,-540.739	0/1:241:132,109:132:4681:109:3896:-278.285,0,-348.904	0/0:280:280,0:280:9960:0:0:0,-84.2884,-896.346	0/1:657:324,333:324:11470:333:11789:-863.083,0,-834.412	0/1:684:322,361:322:11474:361:12887:-953.685,0,-826.579	0/0:86:85,0:85:3052:0:0:0,-25.5875,-274.638	0/0:608:608,0:608:21672:0:0:0,-183.026,-1949.93	0/0:256:250,5:250:8904:5:172:0,-61.3018,-785.53	0/1:235:124,111:124:4392:111:3980:-287.648,0,-324.708	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:480:480,0:480:17088:0:0:0,-144.494,-1537.57	0/1:295:158,137:158:5648:137:4872:-349.833,0,-419.637	0/1:85:48,37:48:1715:37:1332:-94.5948,0,-129.043	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:303:131,172:131:4657:172:6144:-461.621,0,-328.082	0/1:89:58,31:58:2084:31:1097:-72.2472,0,-161.038	0/1:274:136,138:136:4875:138:4900:-358.674,0,-356.419	0/1:165:95,70:95:3349:70:2479:-173.694,0,-251.959	0/0:147:147,0:147:5216:0:0:0,-44.2514,-469.581	0/1:272:145,127:145:5182:127:4492:-322.568,0,-384.639	0/1:167:79,88:79:2795:88:3152:-233.632,0,-201.517	0/1:336:154,182:154:5467:182:6464:-480.704,0,-391.014	0/0:283:282,0:282:9975:0:0:0,-84.8905,-897.341	0/0:386:385,0:385:13671:0:0:0,-115.897,-1229.82	0/0:294:294,0:294:10443:0:0:0,-88.5028,-939.794	0/1:16:8,8:8:273:8:288:-21.4509,0,-20.0837	0/1:257:125,132:125:4475:132:4701:-345.885,0,-325.554	0/1:131:72,59:72:2584:59:2112:-150.914,0,-193.374	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:343:137,206:137:4880:206:7341:-557.49,0,-336.102	0/1:65:34,31:34:1192:31:1107:-80.3732,0,-88.0182	0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4154	0/1:28:22,6:22:788:6:212:-10.996,0,-62.816	0/0:219:219,0:219:7815:0:0:0,-65.9256,-703.382	0/0:209:209,0:209:7439:0:0:0,-62.9153,-669.557	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:462:219,243:219:7735:243:8656:-639.961,0,-557.112	0/0:495:495,0:495:17563:0:0:0,-149.01,-1580.3	0/0:191:191,0:191:6820:0:0:0,-57.4967,-613.873	0/0:251:251,0:251:8876:0:0:0,-75.5585,-798.832	0/0:434:429,4:429:15181:4:131:0,-118.514,-1353.93	0/1:347:128,219:128:4571:219:7837:-600.9,0,-307.099	0/0:114:114,0:114:4049:0:0:0,-34.3174,-364.599	0/0:117:117,0:117:4183:0:0:0,-35.2205,-376.652	0/0:168:168,0:168:5978:0:0:0,-50.573,-538.127	0/0:97:97,0:97:3466:0:0:0,-29.1999,-312.151	0/0:147:146,0:146:5222:0:0:0,-43.9504,-469.757	0/1:141:68,73:68:2436:73:2620:-193.602,0,-177.05	0/0:522:522,0:522:18617:0:0:0,-157.138,-1674.74	0/0:497:497,0:497:17744:0:0:0,-149.612,-1596.57	0/0:140:140,0:140:4996:0:0:0,-42.1442,-449.787	0/0:216:214,2:214:7639:2:72:0,-58.1858,-680.71	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:337:337,0:337:11991:0:0:0,-101.447,-1079.05	0/1:185:98,87:98:3499:87:3128:-226.055,0,-259.43	0/0:623:621,1:621:21954:1:36:0,-184.002,-1971.73	0/0:182:182,0:182:6455:0:0:0,-54.7875,-581.041	0/0:183:181,1:181:6445:1:36:0,-51.549,-576.485	0/1:176:107,69:107:3806:69:2429:-165.882,0,-289.757	0/0:345:343,2:343:12068:2:72:0,-97.0186,-1079.15	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:71:44,27:44:1558:27:957:-65.0707,0,-119.137	0/0:95:95,0:95:3374:0:0:0,-28.5978,-303.874	0/1:113:60,53:60:2145:53:1908:-137.981,0,-159.299	0/1:205:119,86:119:4240:86:3069:-214.726,0,-320.068	0/1:160:49,111:49:1737:111:3939:-306.539,0,-108.448	0/0:300:298,2:298:10604:2:72:0,-83.4723,-947.442	0/0:274:273,1:273:9711:1:36:0,-78.8839,-870.326
chr08	3902037	.	GAACA	AAACA,AAACG	152572	PASS	AB=0.515633,0.47664;ABP=11.1576,21.0683;AC=132,53;AF=0.709677,0.284946;AN=186;AO=5374,1822;CIGAR=1X4M,1X3M1X;DP=7269;DPB=7269;DPRA=79,0.880998;EPP=11672.5,3959.43;EPPR=94.2121;GTI=4;LEN=1,5;MEANALT=1.92391,2.2807;MQM=59.8457,53.9973;MQMR=60;NS=93;NUMALT=2;ODDS=0.00479378;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=192589,63814;QR=1477;RO=42;RPL=5374,1822;RPP=11672.5,3959.43;RPPR=94.2121;RPR=0,0;RUN=1,1;SAF=0,0;SAP=11672.5,3959.43;SAR=5374,1822;SRF=0;SRP=94.2121;SRR=42;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/1:56:0,56,0:0:0:56,0:2008,0:-180.989,-16.8577,0,-180.989,-16.8577,-180.989	1/2:202:1,96,104:1:31:96,104:3448,3661:-576.164,-295.192,-268.781,-278.854,0,-250.035	1/1:229:0,229,0:0:0:229,0:8196,0:-737.612,-68.9359,0,-737.612,-68.9359,-737.612	1/2:56:0,32,24:0:0:32,24:1144,841:-161.966,-68.6876,-59.0546,-93.6315,0,-86.4068	1/2:20:0,10,10:0:0:10,10:360,359:-58.9681,-29.5978,-26.5875,-29.7294,0,-26.7191	1/2:115:0,82,33:0:0:82,33:2948,1153:-334.521,-94.0142,-69.3298,-240.859,0,-230.925	1/2:82:0,54,27:0:0:54,27:1938,955:-235.824,-77.7448,-61.4892,-158.152,0,-150.024	1/2:80:0,30,50:0:0:30,50:1064,1730:-227.434,-140.745,-131.714,-87.0408,0,-71.9893	1/2:89:0,55,34:0:0:55,34:1968,1193:-257.79,-97.3055,-80.7488,-160.838,0,-150.603	1/1:31:0,31,0:0:0:31,0:1099,0:-99.1947,-9.33193,0,-99.1947,-9.33193,-99.1947	1/2:49:2,27,20:2:72:27,20:968,702:-129.522,-51.1687,-48.9166,-73.0749,0,-72.9292	1/2:42:0,24,18:0:0:24,18:856,630:-121.315,-51.5363,-44.3115,-70.1316,0,-64.7131	1/2:43:1,21,21:1:36:21,21:756,709:-115.828,-54.4322,-51.049,-58.7483,0,-55.3641	1/2:48:1,18,29:1:36:18,29:648,1003:-131.013,-78.44,-75.9593,-49.9315,0,-44.139	1/2:31:1,12,17:1:36:12,17:423,594:-79.4415,-45.301,-44.6266,-31.4963,0,-29.3167	1/1:52:0,52,0:0:0:52,0:1868,0:-168.39,-15.6536,0,-168.39,-15.6536,-168.39	1/1:32:2,30,0:2:72:30,0:1080,0:-90.6673,-2.79624,0,-91.2694,-9.0309,-97.1442	0/1:28:3,25,0:3:98:25,0:900,0:-72.8876,0,-0.714446,-73.7907,-8.2402,-81.7007	1/2:219:0,95,124:0:0:95,124:3399,4308:-627.264,-350.105,-321.507,-277.512,0,-240.184	1/1:119:0,119,0:0:0:119,0:4272,0:-384.641,-35.8226,0,-384.641,-35.8226,-384.641	1/1:91:0,90,0:0:0:90,0:3228,0:-290.378,-27.0927,0,-290.378,-27.0927,-290.378	1/2:104:0,61,42:0:0:61,42:2179,1466:-296.759,-119.099,-100.736,-177.682,0,-165.039	1/1:101:0,101,0:0:0:101,0:3617,0:-325.734,-30.404,0,-325.734,-30.404,-325.734	1/1:67:0,66,1:0:0:66,1:2376,35:-213.721,-19.868,0,-210.877,-16.6744,-210.576	1/1:268:0,267,0:0:0:267,0:9539,0:-858.159,-80.375,0,-858.159,-80.375,-858.159	1/1:193:0,193,0:0:0:193,0:6932,0:-623.943,-58.0988,0,-623.943,-58.0988,-623.943	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/2:261:0,142,118:0:0:142,118:5075,4138:-750.043,-336.248,-293.502,-413.789,0,-378.268	1/2:100:0,60,40:0:0:60,40:2147,1395:-288.712,-113.643,-95.5813,-175.421,0,-163.38	1/2:83:0,27,55:0:0:27,55:972,1935:-236.648,-157.335,-149.207,-79.3585,0,-62.8019	1/2:6:0,3,3:0:0:3,3:108,101:-17.3352,-8.51115,-7.60806,-9.17208,0,-8.26899	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:8:0,5,3:0:0:5,3:180,108:-23.8405,-9.15779,-7.65264,-15.0422,0,-14.1391	1/2:155:2,82,71:2:72:82,71:2944,2498:-436.727,-197.18,-178.37,-234.27,0,-218.771	1/2:136:0,74,57:0:0:74,57:2656,1994:-378.672,-162.033,-139.757,-216.676,0,-199.518	1/2:46:1,26,19:1:35:26,19:932,677:-127.975,-52.2606,-47.2812,-73.1745,0,-70.3023	.:.:.:.:.:.:.:.	1/1:122:0,122,0:0:0:122,0:4373,0:-393.722,-36.7257,0,-393.722,-36.7257,-393.722	1/1:46:3,43,0:3:106:43,0:1548,0:-129.719,-3.95828,0,-130.622,-12.9443,-139.255	1/2:103:0,50,53:0:0:50,53:1800,1838:-296.403,-149.544,-134.493,-147.212,0,-131.258	1/2:46:3,25,18:3:107:25,18:896,636:-115.168,-42.9966,-44.194,-64.3505,0,-67.6544	1/2:59:0,26,32:0:0:26,32:923,1115:-165.762,-90.5541,-82.7273,-75.2194,0,-65.5865	1/1:123:2,120,0:2:67:120,0:4309,0:-381.638,-30.6544,0,-382.24,-36.1236,-387.666	1/2:43:0,24,19:0:0:24,19:864,669:-125.236,-54.7377,-47.513,-70.8532,0,-65.1337	1/2:86:0,51,35:0:0:51,35:1823,1239:-249.733,-101.131,-85.7781,-148.958,0,-138.422	1/2:89:0,37,51:0:0:37,51:1328,1777:-252.738,-144.408,-133.27,-108.431,0,-93.0788	1/1:125:1,123,1:1:36:123,1:4408,36:-393.263,-34.089,0,-390.631,-34.0941,-393.267	1/2:177:0,96,80:0:0:96,80:3435,2811:-508.568,-228.464,-199.565,-280.099,0,-256.017	1/2:3:0,2,1:0:0:2,1:72,36:-9.16732,-3.29214,-2.69008,-6.23466,0,-5.93363	1/1:102:0,99,0:0:0:99,0:3560,0:-320.285,-29.802,0,-320.285,-29.802,-320.285	1/1:47:0,47,0:0:0:47,0:1688,0:-152.2,-14.1484,0,-152.2,-14.1484,-152.2	1/2:13:0,2,11:0:0:2,11:72,389:-37.8649,-31.989,-31.3869,-6.23466,0,-2.92333	1/2:76:1,41,33:1:29:41,33:1468,1164:-211.77,-92.3656,-82.3303,-117.427,0,-109.8	1/1:62:0,62,0:0:0:62,0:2213,0:-199.419,-18.6639,0,-199.419,-18.6639,-199.419	2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chr08	3961019	.	G	A	171997	PASS	AB=0.477373;ABP=21.0913;AC=152;AF=0.808511;AN=188;AO=8049;CIGAR=1X;DP=10200;DPB=10200;DPRA=0;EPP=17481.2;EPPR=4667.33;GTI=1;LEN=1;MEANALT=1.03191;MQM=54.0783;MQMR=59.9148;NS=94;NUMALT=1;ODDS=1.01273;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287505;QR=76686;RO=2148;RPL=0;RPP=17481.2;RPPR=4667.33;RPR=8049;RUN=1;SAF=8049;SAP=17481.2;SAR=0;SRF=2148;SRP=4667.33;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:61:0,61:0:0:61:2177:-195.497,-18.3628,0	1/1:187:0,187:0:0:187:6632:-593.402,-56.2926,0	0/1:143:74,69:74:2611:69:2457:-176.747,0,-192.187	1/1:240:0,240:0:0:240:8582:-770.421,-72.2472,0	0/1:130:69,61:69:2446:61:2173:-156.247,0,-181.251	0/1:76:32,44:32:1133:44:1584:-119.316,0,-79.3984	1/1:122:0,122:0:0:122:4380:-393.68,-36.7257,0	1/1:244:0,244:0:0:244:8735:-780.061,-73.4513,0	1/1:95:0,95:0:0:95:3401:-305.302,-28.5979,0	1/1:142:0,142:0:0:142:5055:-454.599,-42.7463,0	1/1:40:0,40:0:0:40:1436:-129.4,-12.0412,0	1/1:46:0,46:0:0:46:1652:-148.494,-13.8474,0	1/1:55:1,54:1:36:54:1929:-169.702,-12.9584,0	1/1:56:0,56:0:0:56:1999:-179.206,-16.8577,0	1/1:55:0,55:0:0:55:1961:-176.001,-16.5567,0	1/1:42:0,42:0:0:42:1485:-132.978,-12.6433,0	1/1:91:0,91:0:0:91:3268:-293.358,-27.3937,0	1/1:47:0,47:0:0:47:1680:-150.603,-14.1484,0	1/1:21:0,21:0:0:21:748:-67.3993,-6.32163,0	1/1:238:0,238:0:0:238:8518:-765.969,-71.6451,0	1/1:181:0,181:0:0:181:6457:-578.871,-54.4864,0	0/1:186:114,71:114:4092:71:2533:-172.028,0,-312.224	1/1:142:0,142:0:0:142:5092:-457.646,-42.7463,0	0/1:183:85,98:85:3026:98:3515:-260.541,0,-217.477	1/1:86:0,86:0:0:86:3062:-272.643,-25.8886,0	0/1:403:203,200:203:7223:200:7170:-522.257,0,-528.619	0/1:205:97,108:97:3488:108:3857:-283.875,0,-252.419	1/1:22:0,22:0:0:22:792:-71.5006,-6.62266,0	1/1:319:0,319:0:0:319:11399:-1024.43,-96.0286,0	1/1:217:8,208:8:288:208:7412:-639.162,-39.1144,0	0/1:139:84,55:84:2997:55:1953:-132.913,0,-228.115	0/1:2:1,1:1:36:1:36:-2.99111,0,-2.99621	1/1:8:0,8:0:0:8:288:-26.2302,-2.40824,0	0/1:10:8,2:8:288:2:72:-3.80923,0,-23.2571	1/1:9:0,9:0:0:9:324:-29.4317,-2.70927,0	1/1:4:0,4:0:0:4:129:-11.9021,-1.20412,0	1/1:132:0,132:0:0:132:4685:-421.517,-39.736,0	0/1:175:84,91:84:2986:91:3245:-238.73,0,-216.289	0/1:42:25,17:25:896:17:582:-39.9321,0,-68.3171	1/1:2:0,2:0:0:2:72:-6.74108,-0.60206,0	0/1:257:146,111:146:5236:111:3981:-278.984,0,-394.012	0/1:20:7,13:7:252:13:453:-34.8795,0,-17.0084	0/1:189:94,95:94:3357:95:3350:-243.258,0,-245.422	0/1:70:38,32:38:1368:32:1152:-82.6728,0,-102.349	1/1:47:0,47:0:0:47:1682:-151.338,-14.1484,0	0/1:135:66,69:66:2368:69:2461:-180.883,0,-172.731	0/1:136:66,70:66:2360:70:2490:-182.365,0,-171.719	0/1:169:70,99:70:2520:99:3541:-267.552,0,-176.175	1/1:111:0,111:0:0:111:3953:-355.051,-33.4143,0	1/1:169:0,169:0:0:169:6059:-544.43,-50.8741,0	1/1:224:0,224:0:0:224:8051:-723.442,-67.4307,0	0/1:9:3,6:3:108:6:216:-16.9817,0,-7.3659	0/1:110:45,65:45:1605:65:2336:-175.755,0,-111.625	0/1:71:31,40:31:1101:40:1410:-105.593,0,-78.0252	0/1:15:8,7:8:288:7:252:-18.2713,0,-21.752	0/1:161:89,72:89:3200:72:2573:-181.713,0,-239.756	0/1:68:40,28:40:1436:28:1004:-70.1416,0,-108.258	1/1:12:0,12:0:0:12:432:-39.2088,-3.61236,0	0/1:28:14,14:14:489:14:500:-36.8638,0,-35.9101	1/1:91:0,91:0:0:91:3257:-292.206,-27.3937,0	1/1:77:0,77:0:0:77:2772:-249.119,-23.1793,0	1/1:8:0,8:0:0:8:288:-26.2485,-2.40824,0	0/1:221:116,105:116:4118:105:3746:-270.128,0,-304.276	1/1:246:1,245:1:36:245:8785:-784.882,-70.4551,0	1/1:107:0,107:0:0:107:3795:-341.078,-32.2102,0	1/1:88:0,88:0:0:88:3164:-284.489,-26.4906,0	1/1:231:0,231:0:0:231:8213:-737.209,-69.5379,0	0/1:234:182,52:182:6453:52:1839:-94.9928,0,-510.4	1/1:17:0,17:0:0:17:612:-55.3134,-5.11751,0	1/1:107:0,107:0:0:107:3844:-344.002,-32.2102,0	1/1:60:0,60:0:0:60:2141:-192.707,-18.0618,0	1/1:25:0,25:0:0:25:900:-81.1783,-7.52575,0	1/1:100:0,100:0:0:100:3545:-317.889,-30.103,0	0/1:50:25,25:25:896:25:881:-64.1614,0,-65.9089	1/1:157:0,157:0:0:157:5603:-503.052,-47.2617,0	1/1:214:1,212:1:32:212:7624:-681.571,-61.2598,0	1/1:122:1,121:1:36:121:4290:-380.316,-33.1274,0	1/1:154:5,149:5:180:149:5329:-461.603,-29.8066,0	0/1:9:1,8:1:36:8:288:-23.4921,0,-0.889005	1/1:158:3,155:3:108:155:5538:-487.015,-37.4876,0	0/1:156:48,108:48:1720:108:3824:-295.696,0,-108.125	1/1:222:3,219:3:104:219:7811:-691.257,-57.1283,0	1/1:64:0,64:0:0:64:2284:-205.372,-19.2659,0	1/1:53:0,53:0:0:53:1908:-171.683,-15.9546,0	0/1:98:54,44:54:1944:44:1576:-112.185,0,-145.735	1/1:104:1,103:1:36:103:3708:-329.662,-27.7088,0	1/1:31:0,31:0:0:31:1112:-100.11,-9.33193,0	0/1:57:30,27:30:1076:27:938:-67.1267,0,-79.9941	1/1:41:0,41:0:0:41:1468:-131.009,-12.3422,0	0/1:16:9,7:9:324:7:252:-18.1798,0,-24.6894	0/1:42:25,17:25:900:17:612:-42.566,0,-68.6778	0/1:51:41,10:41:1453:10:360:-17.3659,0,-115.711	1/1:101:0,101:0:0:101:3594:-323.23,-30.404,0	1/1:89:0,89:0:0:89:3181:-285.416,-26.7917,0
chr08	3961043	.	TT	CG,CT	215008	PASS	AB=0.480893,0.516377;ABP=15.7891,12.3988;AC=152,36;AF=0.808511,0.191489;AN=188;AO=8026,2110;CIGAR=2X,1X1M;DP=10165;DPB=10165;DPRA=0,1.24015;EPP=17413.9,4558.8;EPPR=7.35324;GTI=0;LEN=2,1;MEANALT=1.75532,2.25;MQM=54.1004,59.9009;MQMR=60;NS=94;NUMALT=2;ODDS=0.0136079;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=280748,75026;QR=72;RO=2;RPL=8024,2107;RPP=17413.9,4558.8;RPPR=7.35324;RPR=2,3;RUN=1,1;SAF=8026,2110;SAP=17431.2,4584.82;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,61,0:0:0:61,0:2137,0:-191.65,-18.3628,0,-191.65,-18.3628,-191.65	1/1:184:0,182,1:0:0:182,1:6324,32:-566.905,-54.7875,0,-564.338,-52.2412,-564.037	1/2:143:0,70,73:0:0:70,73:2449,2603:-410.877,-212.543,-191.471,-198.686,0,-176.711	1/1:240:0,240,0:0:0:240,0:8437,0:-757.327,-72.2472,0,-757.327,-72.2472,-757.327	1/2:127:0,61,66:0:0:61,66:2105,2354:-362.942,-192.242,-173.879,-171.051,0,-151.183	1/2:75:0,43,32:0:0:43,32:1519,1131:-215.755,-92.4648,-79.5205,-123.643,0,-114.01	1/1:121:0,120,0:0:0:120,0:4198,0:-377.211,-36.1236,0,-377.211,-36.1236,-377.211	1/1:248:0,242,4:0:0:242,4:8405,139:-752.445,-72.8493,0,-741.414,-61.7513,-740.21	1/1:94:0,94,0:0:0:94,0:3322,0:-298.27,-28.2968,0,-298.27,-28.2968,-298.27	1/1:143:0,142,0:0:0:142,0:4955,0:-445.331,-42.7463,0,-445.331,-42.7463,-445.331	1/1:40:0,40,0:0:0:40,0:1386,0:-124.909,-12.0412,0,-124.909,-12.0412,-124.909	1/1:46:0,46,0:0:0:46,0:1593,0:-143.236,-13.8474,0,-143.236,-13.8474,-143.236	1/1:55:0,54,1:0:0:54,1:1886,36:-169.159,-16.2556,0,-166.221,-12.9584,-165.92	1/1:55:0,55,0:0:0:55,0:1934,0:-173.934,-16.5567,0,-173.934,-16.5567,-173.934	1/1:56:1,55,0:1:36:55,0:1925,0:-169.172,-13.2594,0,-169.473,-16.5567,-172.41	1/1:42:0,42,0:0:0:42,0:1456,0:-130.527,-12.6433,0,-130.527,-12.6433,-130.527	1/1:91:0,91,0:0:0:91,0:3195,0:-286.892,-27.3937,0,-286.892,-27.3937,-286.892	1/1:46:0,46,0:0:0:46,0:1582,0:-141.95,-13.8474,0,-141.95,-13.8474,-141.95	1/1:21:0,21,0:0:0:21,0:741,0:-66.8361,-6.32163,0,-66.8361,-6.32163,-66.8361	1/1:238:0,238,0:0:0:238,0:8375,0:-753.163,-71.6451,0,-753.163,-71.6451,-753.163	1/1:181:0,181,0:0:0:181,0:6188,0:-555.807,-54.4864,0,-555.807,-54.4864,-555.807	1/2:184:0,68,113:0:0:68,113:2367,4017:-519.679,-327.343,-306.873,-192.327,0,-158.311	1/1:144:0,144,0:0:0:144,0:5077,0:-456.554,-43.3483,0,-456.554,-43.3483,-456.554	1/2:181:0,99,82:0:0:99,82:3438,2913:-516.488,-237.716,-207.914,-279.123,0,-254.439	1/1:86:0,85,1:0:0:85,1:2941,36:-262.61,-25.5876,0,-259.68,-22.2994,-259.379	1/2:397:0,199,197:0:0:199,197:6933,6957:-1129.46,-566.667,-506.762,-562.907,0,-503.604	1/2:206:0,109,96:0:0:109,96:3798,3420:-586.32,-278.863,-246.051,-307.557,0,-278.658	1/1:22:0,22,0:0:0:22,0:783,0:-70.6965,-6.62266,0,-70.6965,-6.62266,-70.6965	1/1:319:0,319,0:0:0:319,0:11176,0:-1004.24,-96.0286,0,-1004.24,-96.0286,-1004.24	1/1:219:0,210,9:0:0:210,9:7392,324:-663.351,-63.2163,0,-636.914,-36.4197,-634.205	1/2:138:0,55,83:0:0:55,83:1918,2945:-395.077,-240.298,-223.741,-155.129,0,-130.143	1/2:3:0,1,2:0:0:1,2:34,72:-8.97823,-6.22982,-5.92879,-3.09465,0,-2.49259	1/1:8:0,8,0:0:0:8,0:286,0:-26.0499,-2.40824,0,-26.0499,-2.40824,-26.0499	1/2:10:0,2,8:0:0:2,8:72,280:-28.9914,-23.1311,-22.529,-6.21747,0,-3.80923	1/1:8:0,8,0:0:0:8,0:286,0:-26.0225,-2.40824,0,-26.0225,-2.40824,-26.0225	1/1:5:0,5,0:0:0:5,0:169,0:-15.3216,-1.50515,0,-15.3216,-1.50515,-15.3216	1/1:132:0,131,1:0:0:131,1:4564,36:-410.356,-39.4349,0,-407.418,-36.1377,-407.117	1/2:172:0,90,82:0:0:90,82:3125,2904:-490.225,-236.909,-209.816,-253.667,0,-228.982	1/2:43:0,17,26:0:0:17,26:597,917:-123.481,-75.0178,-69.9003,-48.8139,0,-40.9871	1/1:2:0,2,0:0:0:2,0:61,0:-5.70205,-0.60206,0,-5.70205,-0.60206,-5.70205	1/2:255:0,111,144:0:0:111,144:3913,5109:-734.177,-416.605,-383.191,-317.924,0,-274.576	1/2:19:0,12,6:0:0:12,6:430,216:-52.6178,-17.7187,-14.1063,-34.9897,0,-33.1835	1/2:191:0,97,94:0:0:97,94:3369,3362:-547.395,-274.47,-245.27,-273.276,0,-244.98	1/2:70:0,32,38:0:0:32,38:1129,1364:-203.308,-111.622,-101.989,-92.0417,0,-80.6026	1/1:45:0,45,0:0:0:45,0:1579,0:-142.147,-13.5464,0,-142.147,-13.5464,-142.147	1/2:134:0,69,65:0:0:69,65:2420,2319:-386.11,-189.4,-168.629,-197.064,0,-177.497	1/2:134:0,70,64:0:0:70,64:2408,2276:-380.409,-185.837,-164.765,-194.922,0,-175.656	1/2:169:0,99,68:0:0:99,68:3432,2440:-477.601,-199.102,-169.3,-278.57,0,-258.1	1/1:110:0,108,0:0:0:108,0:3776,0:-339.067,-32.5112,0,-339.067,-32.5112,-339.067	1/1:168:0,168,0:0:0:168,0:5891,0:-529.608,-50.573,0,-529.608,-50.573,-529.608	1/1:224:0,223,0:0:0:223,0:7690,0:-691.051,-67.1297,0,-691.051,-67.1297,-691.051	1/2:9:0,6,3:0:0:6,3:214,108:-26.5169,-9.17208,-7.3659,-17.703,0,-16.7999	1/2:109:0,64,45:0:0:64,45:2251,1620:-315.108,-132.544,-113.278,-182.92,0,-169.374	1/2:69:0,39,30:0:0:39,30:1348,1080:-197.895,-88.4823,-76.7422,-109.766,0,-100.735	1/2:14:0,7,7:0:0:7,7:252,252:-41.2433,-20.9217,-18.8145,-20.6795,0,-18.5723	1/2:157:0,71,86:0:0:71,86:2486,3054:-449.888,-249.201,-227.828,-201.037,0,-175.149	1/2:67:0,28,39:0:0:28,39:990,1385:-193.455,-112.8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chr08	3998882	.	G	A	147088	PASS	AB=0.507554;ABP=4.71619;AC=152;AF=0.808511;AN=188;AO=6851;CIGAR=1X;DP=8557;DPB=8557;DPRA=0;EPP=14879.8;EPPR=3688;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9257;MQMR=59.9835;NS=94;NUMALT=1;ODDS=5.6338;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244307;QR=60655;RO=1701;RPL=6851;RPP=14879.8;RPPR=3696.68;RPR=0;RUN=1;SAF=6851;SAP=14879.8;SAR=0;SRF=1700;SRP=3688;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1788:-161.198,-15.0515,0	1/1:78:1,77:1:36:77:2723:-241.711,-19.8821,0	0/1:198:97,101:97:3450:101:3632:-267.473,0,-251.109	1/1:169:0,169:0:0:169:6043:-543.813,-50.8741,0	0/1:64:33,31:33:1173:31:1100:-80.0412,0,-86.6096	0/1:60:18,42:18:631:42:1490:-116.331,0,-39.0539	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:250:0,250:0:0:250:8893:-800.212,-75.2575,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:76:0,76:0:0:76:2709:-244.05,-22.8783,0	1/1:49:0,49:0:0:49:1739:-156.793,-14.7505,0	1/1:78:0,78:0:0:78:2789:-251.25,-23.4803,0	1/1:76:0,76:0:0:76:2684:-241.802,-22.8783,0	1/1:40:0,40:0:0:40:1436:-129.525,-12.0412,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:53:0,53:0:0:53:1899:-171.184,-15.9546,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:129:0,129:0:0:129:4616:-415.597,-38.8329,0	1/1:105:0,105:0:0:105:3737:-336.531,-31.6082,0	0/1:191:112,79:112:3982:79:2820:-196.542,0,-301.075	1/1:95:0,95:0:0:95:3402:-306.365,-28.5979,0	0/1:77:29,48:29:1036:48:1724:-132.266,0,-70.3746	1/1:104:0,104:0:0:104:3728:-335.684,-31.3071,0	0/1:240:118,122:118:4217:122:4346:-319.066,0,-307.462	0/1:171:80,91:80:2871:91:3268:-242.859,0,-207.15	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:312:0,312:0:0:312:11155:-1003.84,-93.9214,0	1/1:107:1,106:1:36:106:3790:-337.697,-28.6119,0	0/1:113:62,51:62:2220:51:1821:-130.153,0,-166.048	0/1:10:6,4:6:216:4:139:-9.84191,0,-16.7802	1/1:40:0,39:0:0:39:1392:-125.219,-11.7402,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	1/1:177:0,175:0:0:175:6247:-561.964,-52.6803,0	0/1:117:37,80:37:1309:80:2837:-220.321,0,-82.889	0/1:43:19,24:19:680:24:860:-64.7775,0,-48.5849	1/1:6:0,6:0:0:6:205:-18.7833,-1.80618,0	0/1:124:56,68:56:2008:68:2391:-177.987,0,-143.666	0/1:61:33,28:33:1172:28:1000:-71.9528,0,-87.4247	0/1:140:57,83:57:2029:83:2957:-224.218,0,-140.736	0/1:37:17,20:17:603:20:720:-53.986,0,-43.4614	1/1:41:0,41:0:0:41:1456:-131.335,-12.3422,0	0/1:138:62,76:62:2216:76:2705:-202.152,0,-158.157	0/1:100:43,57:43:1529:57:2029:-152.778,0,-107.798	0/1:181:93,88:93:3336:88:3145:-228.788,0,-245.971	1/1:126:0,126:0:0:126:4446:-400.311,-37.9298,0	1/1:163:0,163:0:0:163:5810:-523.012,-49.0679,0	1/1:96:0,96:0:0:96:3433:-309.126,-28.8989,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:95:49,46:49:1748:46:1633:-118.659,0,-129.006	0/1:61:33,28:33:1176:28:1008:-72.6735,0,-87.7849	0/1:25:9,16:9:324:16:572:-44.2877,0,-21.9801	0/1:129:73,56:73:2616:56:2008:-142.16,0,-196.855	0/1:30:14,16:14:500:16:567:-42.3298,0,-36.3053	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	1/1:89:0,89:0:0:89:3169:-285.406,-26.7917,0	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:182:91,91:91:3264:91:3260:-238.833,0,-239.193	1/1:143:3,140:3:108:140:5030:-442.769,-32.9721,0	1/1:48:0,48:0:0:48:1703:-153.555,-14.4494,0	1/1:117:0,117:0:0:117:4149:-373.591,-35.2205,0	1/1:174:1,173:1:36:173:6059:-541.493,-48.7809,0	0/1:169:127,42:127:4517:42:1497:-84.1485,0,-355.788	1/1:38:1,37:1:36:37:1328:-116.224,-7.84087,0	1/1:61:0,61:0:0:61:2154:-194.126,-18.3628,0	1/1:28:0,28:0:0:28:985:-88.9615,-8.42884,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:162:0,162:0:0:162:5773:-519.679,-48.7669,0	0/1:129:49,80:49:1751:80:2844:-217.364,0,-119.041	1/1:116:0,116:0:0:116:4149:-373.588,-34.9195,0	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	1/1:120:0,120:0:0:120:4198:-377.997,-36.1236,0	1/1:113:0,113:0:0:113:4032:-362.877,-34.0164,0	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3601	1/1:93:0,93:0:0:93:3300:-297.219,-27.9958,0	0/1:161:70,90:70:2484:90:3201:-239.787,0,-175.287	1/1:251:0,251:0:0:251:8981:-808.242,-75.5585,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:58:0,58:0:0:58:2084:-187.828,-17.4597,0	0/1:57:29,28:29:1023:28:986:-71.8925,0,-75.223	1/1:104:0,104:0:0:104:3728:-335.719,-31.3071,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:45:16,29:16:548:29:1035:-79.9167,0,-36.095	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	0/1:56:27,29:27:956:29:1016:-74.8853,0,-69.4981	0/1:106:49,57:49:1730:57:2052:-153.042,0,-124.074	0/1:74:58,16:58:2080:16:576:-29.8988,0,-165.194	1/1:134:0,133:0:0:133:4731:-425.587,-40.037,0	1/1:89:0,89:0:0:89:3181:-286.514,-26.7917,0
chr08	4002858	.	A	C	165374	PASS	AB=0.459331;ABP=63.5917;AC=152;AF=0.808511;AN=188;AO=8340;CIGAR=1X;DP=10637;DPB=10637;DPRA=0;EPP=18113.1;EPPR=4977.85;GTI=1;LEN=1;MEANALT=1.06383;MQM=39.4085;MQMR=58.9607;NS=94;NUMALT=1;ODDS=0.612858;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=298653;QR=80523;RO=2291;RPL=0;RPP=18113.1;RPPR=4977.85;RPR=8340;RUN=1;SAF=8340;SAP=18113.1;SAR=0;SRF=2291;SRP=4977.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1552:-129.942,-13.2453,0	1/1:133:0,133:0:0:133:4749:-393.549,-40.037,0	0/1:134:52,82:52:1860:82:2932:-202.471,0,-127.312	1/1:212:0,212:0:0:212:7585:-654.268,-63.8184,0	0/1:72:51,21:51:1798:21:748:-39.9653,0,-140.144	0/1:58:19,39:19:684:39:1392:-99.9206,0,-44.0176	1/1:187:0,186:0:0:186:6630:-574.157,-55.9916,0	1/1:131:0,131:0:0:131:4692:-393.64,-39.4349,0	1/1:94:0,94:0:0:94:3384:-278.297,-28.2968,0	1/1:118:0,118:0:0:118:4232:-365.05,-35.5215,0	1/1:56:0,56:0:0:56:2012:-173.709,-16.8577,0	1/1:83:0,83:0:0:83:2972:-247.358,-24.9855,0	1/1:82:0,82:0:0:82:2918:-242.048,-24.6845,0	1/1:72:0,72:0:0:72:2577:-214.026,-21.6742,0	1/1:105:0,105:0:0:105:3772:-326.904,-31.6082,0	1/1:61:0,61:0:0:61:2189:-184.431,-18.3628,0	1/1:71:0,71:0:0:71:2548:-214.144,-21.3731,0	1/1:67:0,67:0:0:67:2396:-198.307,-20.169,0	1/1:61:1,60:1:36:60:2160:-174.142,-14.7646,0	1/1:234:1,233:1:36:233:8342:-714.182,-66.9383,0	1/1:136:1,135:1:36:135:4840:-403.369,-37.3418,0	0/1:132:86,45:86:3012:45:1618:-100.85,0,-231.415	1/1:132:0,131:0:0:131:4672:-403.911,-39.4349,0	0/1:162:80,82:80:2857:82:2925:-193.897,0,-208.565	1/1:102:0,102:0:0:102:3656:-308.778,-30.7051,0	0/1:295:163,132:163:5765:132:4732:-321.827,0,-429.703	0/1:262:107,155:107:3790:155:5560:-384.715,0,-262.233	1/1:39:0,39:0:0:39:1396:-117.909,-11.7402,0	1/1:194:1,193:1:36:193:6916:-602.039,-55.0122,0	1/1:131:2,129:2:72:129:4611:-375.052,-32.6066,0	0/1:126:85,41:85:2943:41:1476:-90.0484,0,-227.09	0/1:19:9,10:9:324:10:360:-24.5148,0,-23.7863	1/1:30:0,30:0:0:30:1080:-90.7869,-9.0309,0	0/1:8:1,7:1:36:7:252:-19.1914,0,-1.19003	1/1:8:0,8:0:0:8:288:-23.8923,-2.40824,0	1/1:28:0,28:0:0:28:1000:-82.4772,-8.42884,0	1/1:296:0,295:0:0:295:10583:-920.894,-88.8039,0	0/1:217:95,122:95:3208:122:4376:-298.512,0,-223.155	0/1:87:50,37:50:1780:37:1323:-83.2089,0,-133.816	1/1:1:0,1:0:0:1:36:-3.3876,-0.30103,0	0/1:210:117,93:117:4136:93:3344:-216.317,0,-307.865	0/1:48:23,25:23:801:25:892:-59.7367,0,-57.6365	0/1:166:83,83:83:2912:83:2964:-198.298,0,-212.162	0/1:110:53,57:53:1904:57:2044:-142.078,0,-138.491	1/1:70:0,70:0:0:70:2512:-218.303,-21.0721,0	0/1:165:101,64:101:3560:64:2292:-149.259,0,-270.144	0/1:102:53,49:53:1908:49:1748:-116.261,0,-140.471	0/1:244:143,101:143:5025:101:3620:-238.925,0,-378.694	1/1:176:1,175:1:36:175:6269:-538.737,-49.3921,0	1/1:131:0,130:0:0:130:4648:-404.045,-39.1339,0	1/1:189:1,188:1:36:188:6725:-584.689,-53.2964,0	0/1:13:6,7:6:186:7:244:-17.4304,0,-13.1278	0/1:130:68,62:68:2425:62:2228:-146.341,0,-178.65	0/1:94:36,57:36:1281:57:2026:-149.119,0,-87.2312	0/1:24:7,17:7:237:17:608:-42.9365,0,-14.4343	0/1:166:92,74:92:3262:74:2652:-170.782,0,-243.093	0/1:89:47,42:47:1669:42:1497:-102.892,0,-122.808	1/1:7:0,7:0:0:7:252:-22.6312,-2.10721,0	0/1:7:2,5:2:72:5:180:-13.9408,0,-4.72951	1/1:67:0,67:0:0:67:2404:-200.634,-20.169,0	1/1:155:0,155:0:0:155:5541:-479.927,-46.6597,0	1/1:3:0,3:0:0:3:108:-9.80756,-0.90309,0	0/1:283:176,107:176:6175:107:3821:-249.74,0,-469.921	1/1:190:0,190:0:0:190:6788:-588.729,-57.1957,0	1/1:79:0,79:0:0:79:2832:-236.852,-23.7814,0	1/1:75:0,75:0:0:75:2690:-230.5,-22.5773,0	1/1:198:1,197:1:36:197:7048:-605.855,-56.0057,0	0/1:69:46,23:46:1581:23:824:-50.9431,0,-121.779	1/1:22:0,22:0:0:22:788:-66.3053,-6.62266,0	1/1:83:1,82:1:36:82:2944:-239.744,-21.3872,0	1/1:118:0,118:0:0:118:4232:-368.697,-35.5215,0	1/1:14:0,14:0:0:14:492:-42.8276,-4.21442,0	1/1:119:0,119:0:0:119:4260:-355.92,-35.8226,0	0/1:62:35,27:35:1226:27:972:-61.8892,0,-91.9506	1/1:132:0,132:0:0:132:4714:-390.968,-39.736,0	1/1:208:1,207:1:36:207:7428:-638.763,-59.016,0	1/1:108:0,108:0:0:108:3852:-319.644,-32.5112,0	1/1:141:0,141:0:0:141:5048:-419.173,-42.4452,0	0/1:18:12,6:12:387:6:216:-11.5103,0,-29.7197	1/1:154:1,153:1:21:153:5473:-454.672,-44.2671,0	0/1:140:90,50:90:3157:50:1796:-106.968,0,-241.811	1/1:170:0,170:0:0:170:6078:-521.808,-51.1751,0	1/1:152:0,152:0:0:152:5456:-468.695,-45.7566,0	1/1:92:0,92:0:0:92:3304:-287.337,-27.6948,0	0/1:120:66,54:66:2322:54:1944:-132.693,0,-173.005	1/1:240:0,240:0:0:240:8592:-738.808,-72.2472,0	1/1:58:0,58:0:0:58:2080:-174.33,-17.4597,0	0/1:109:42,67:42:1504:67:2396:-165.017,0,-102.613	1/1:70:0,70:0:0:70:2513:-206.371,-21.0721,0	0/1:38:27,11:27:900:11:392:-21.5419,0,-69.8248	0/1:143:83,60:83:2944:60:2156:-136.105,0,-220.864	0/1:95:72,23:72:2439:23:824:-43.0351,0,-191.142	1/1:147:0,147:0:0:147:5276:-453.94,-44.2514,0	1/1:144:1,143:1:36:143:5144:-438.78,-39.75,0
chr08	4016767	.	ACCC	ACCG,GCCG	202832	PASS	AB=0.475754,0.51715;ABP=20.2793,11.65;AC=152,36;AF=0.808511,0.191489;AN=188;AO=7551,1772;CIGAR=3M1X,1X2M1X;DP=9373;DPB=9372.5;DPRA=11.1876,1.04804;EPP=16382.4,3850.86;EPPR=0;GTI=1;LEN=1,4;MEANALT=1.94624,2.54545;MQM=59.9967,59.9582;MQMR=0;NS=94;NUMALT=2;ODDS=3.12624;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=268775,62184;QR=0;RO=0;RPL=7549,1772;RPP=16382.4,3850.86;RPPR=0;RPR=2,0;RUN=1,1;SAF=0,0;SAP=16399.8,3850.86;SAR=7551,1772;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:128:0,128,0:0:0:128,0:4558,0:-410.387,-38.5318,0,-410.387,-38.5318,-410.387	1/2:100:0,54,46:0:0:54,46:1922,1610:-287.989,-131.341,-115.086,-157,0,-143.153	1/1:193:0,192,0:0:0:192,0:6856,0:-616.882,-57.7978,0,-616.882,-57.7978,-616.882	1/2:51:0,27,24:0:0:27,24:938,849:-145.758,-69.5043,-61.3765,-76.604,0,-69.3793	1/2:60:0,20,39:0:0:20,39:716,1400:-172.726,-114.336,-108.315,-58.5206,0,-46.7804	1/1:124:0,123,0:0:0:123,0:4351,0:-391.407,-37.0267,0,-391.407,-37.0267,-391.407	1/1:141:0,138,2:0:0:138,2:4897,72:-440.525,-41.5421,0,-434.65,-35.6673,-434.048	1/1:92:0,92,0:0:0:92,0:3272,0:-294.702,-27.6948,0,-294.702,-27.6948,-294.702	1/1:122:0,119,0:0:0:119,0:4229,0:-380.438,-35.8226,0,-380.438,-35.8226,-380.438	1/1:111:0,111,0:0:0:111,0:3918,0:-352.817,-33.4143,0,-352.817,-33.4143,-352.817	1/1:108:0,107,0:0:0:107,0:3776,0:-339.792,-32.2102,0,-339.792,-32.2102,-339.792	1/1:113:0,112,0:0:0:112,0:3996,0:-359.471,-33.7154,0,-359.471,-33.7154,-359.471	1/1:120:0,120,0:0:0:120,0:4283,0:-385.648,-36.1236,0,-385.648,-36.1236,-385.648	1/1:95:0,94,0:0:0:94,0:3363,0:-302.526,-28.2968,0,-302.526,-28.2968,-302.526	1/1:69:0,69,0:0:0:69,0:2442,0:-220.035,-20.7711,0,-220.035,-20.7711,-220.035	1/1:123:0,123,0:0:0:123,0:4402,0:-396.247,-37.0267,0,-396.247,-37.0267,-396.247	1/1:93:0,92,1:0:0:92,1:3246,36:-292.001,-27.6948,0,-289.064,-24.3975,-288.762	1/1:51:0,51,0:0:0:51,0:1815,0:-163.631,-15.3525,0,-163.631,-15.3525,-163.631	1/1:109:0,108,0:0:0:108,0:3851,0:-346.546,-32.5112,0,-346.546,-32.5112,-346.546	1/1:158:0,158,0:0:0:158,0:5610,0:-505.024,-47.5627,0,-505.024,-47.5627,-505.024	1/2:77:0,17,59:0:0:17,59:595,2074:-217.179,-168.77,-163.652,-48.4659,0,-30.7051	1/1:109:0,108,0:0:0:108,0:3855,0:-346.786,-32.5112,0,-346.786,-32.5112,-346.786	1/2:62:0,30,31:0:0:30,31:1060,1086:-174.685,-88.3567,-79.3258,-86.3208,0,-76.9888	1/1:56:0,55,1:0:0:55,1:1964,36:-176.675,-16.5567,0,-173.738,-13.2594,-173.437	1/2:378:0,150,226:0:0:150,226:5351,7950:-1083.41,-647.196,-602.042,-436.269,0,-368.236	1/2:166:0,69,97:0:0:69,97:2476,3418:-480.603,-278.636,-257.865,-202.322,0,-173.122	1/1:53:0,53,0:0:0:53,0:1904,0:-171.638,-15.9546,0,-171.638,-15.9546,-171.638	1/1:158:0,158,0:0:0:158,0:5658,0:-509.339,-47.5627,0,-509.339,-47.5627,-509.339	1/1:187:0,183,3:0:0:183,3:6519,102:-586.452,-55.0885,0,-578.179,-46.8296,-577.276	1/2:132:0,75,55:0:0:75,55:2671,1932:-374.944,-157.239,-134.661,-217.699,0,-201.142	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:292:0,291,0:0:0:291,0:10369,0:-932.775,-87.5997,0,-932.775,-87.5997,-932.775	1/2:221:0,105,114:0:0:105,114:3720,3973:-626.167,-323.124,-291.516,-303.069,0,-268.752	1/2:91:0,43,48:0:0:43,48:1524,1679:-261.1,-136.945,-124.001,-124.507,0,-110.057	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:104:0,63,41:0:0:63,41:2251,1421:-299.376,-115.839,-96.8744,-183.888,0,-171.545	1/2:39:0,23,16:0:0:23,16:824,569:-113.929,-46.726,-39.8023,-67.5596,0,-62.7431	1/2:73:0,47,24:0:0:47,24:1672,848:-205.325,-69.0604,-54.912,-136.263,0,-129.039	1/2:127:0,55,71:0:0:55,71:1964,2504:-364.004,-203.88,-187.324,-160.119,0,-138.746	1/1:97:0,97,0:0:0:97,0:3409,0:-307.025,-29.1999,0,-307.025,-29.1999,-307.025	1/2:71:0,35,35:0:0:35,35:1244,1240:-202.382,-101.008,-90.4724,-101.369,0,-90.8329	1/2:96:0,59,36:0:0:59,36:2100,1250:-272.758,-101.599,-83.8385,-171.149,0,-160.312	1/2:250:0,137,110:0:0:137,110:4875,3856:-711.095,-313.786,-272.545,-397.321,0,-364.208	1/1:62:0,61,1:0:0:61,1:2159,36:-194.217,-18.3628,0,-191.28,-15.0656,-190.979	1/1:133:0,131,0:0:0:131,0:4687,0:-421.763,-39.4349,0,-421.763,-39.4349,-421.763	1/1:61:0,61,0:0:0:61,0:2192,0:-197.545,-18.3628,0,-197.545,-18.3628,-197.545	1/2:12:0,4,8:0:0:4,8:140,287:-35.1559,-23.7682,-22.5641,-11.7405,0,-9.33222	1/2:82:0,52,30:0:0:52,30:1855,1061:-237.991,-86.7701,-71.1166,-151.575,0,-142.545	1/2:43:0,23,20:0:0:23,20:824,700:-124.507,-57.3012,-50.3775,-67.5596,0,-61.539	2/2:9:0,0,8:0:0:0,8:0,285:-25.6352,-25.6352,-25.6352,-2.40824,-2.40824,0	1/2:100:0,44,56:0:0:44,56:1568,1936:-285.466,-157.651,-144.406,-128.166,0,-111.309	1/2:33:0,22,10:0:0:22,10:784,348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chr08	4095336	.	T	C	45093.4	PASS	AB=0.636753;ABP=533.374;AC=36;AF=0.191489;AN=188;AO=2106;CIGAR=1X;DP=7253;DPB=7253;DPRA=1.49415;EPP=1805.03;EPPR=6397.4;GTI=5;LEN=1;MEANALT=1.02128;MQM=59.9915;MQMR=59.9901;NS=94;NUMALT=1;ODDS=0.107772;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74398;QR=184007;RO=5144;RPL=1714;RPP=1805.03;RPPR=6397.4;RPR=392;RUN=1;SAF=2106;SAP=4576.13;SAR=0;SRF=5144;SRP=11173.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7228	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:149:44,105:44:1580:105:3713:-289.519,0,-97.6381	0/0:122:120,2:120:4284:2:72:0,-29.8889,-378.902	0/1:46:21,25:21:743:25:887:-66.3007,0,-53.346	0/1:54:24,30:24:864:30:1080:-81.2576,0,-61.8269	0/0:65:62,3:62:2224:3:104:0,-9.86414,-190.721	0/0:134:134,0:134:4786:0:0:0,-40.338,-430.896	0/0:90:89,1:89:3200:1:36:0,-23.4944,-284.624	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/0:88:88,0:88:3142:0:0:0,-26.4906,-283.005	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:100:99,0:99:3548:0:0:0,-29.802,-319.327	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:73:73,0:73:2605:0:0:0,-21.9752,-234.697	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.874	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.462	0/1:98:13,85:13:464:85:3015:-242.081,0,-12.5966	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:14:6,8:6:207:8:288:-22.053,0,-14.7525	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/1:216:74,142:74:2647:142:5025:-387.379,0,-173.453	0/1:192:77,115:77:2764:115:4093:-310.758,0,-191.203	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:156:156,0:156:5608:0:0:0,-46.9607,-504.839	0/0:129:123,6:123:4380:6:208:0,-19.7738,-375.317	0/1:88:30,58:30:1076:58:2067:-159.81,0,-70.6622	0/1:19:10,9:10:360:9:315:-22.9677,0,-27.0247	0/0:11:10,0:10:360:0:0:0,-3.0103,-32.5253	0/1:10:3,7:3:108:7:245:-19.3799,0,-7.06487	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:151:150,1:150:5392:1:36:0,-41.8573,-481.81	0/1:170:56,114:56:1995:114:4030:-311.717,0,-128.648	0/1:65:28,37:28:1008:37:1305:-98.1825,0,-71.4694	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:102:19,83:19:680:83:2935:-233.678,0,-30.8241	0/1:47:22,25:22:788:25:875:-64.917,0,-57.0964	0/1:144:40,104:40:1428:104:3695:-289.406,0,-85.4692	0/1:45:21,24:21:756:24:864:-64.5362,0,-54.8209	0/0:38:37,1:37:1328:1:36:0,-7.84086,-116.224	0/1:81:36,45:36:1275:45:1587:-118.734,0,-90.6688	0/1:70:34,36:34:1220:36:1260:-92.6273,0,-89.0347	0/1:207:69,138:69:2440:138:4899:-378.753,0,-157.541	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.418	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:29:8,21:8:288:21:747:-58.8244,0,-17.5375	0/1:178:34,143:34:1220:143:5044:-400.509,0,-56.5035	0/1:77:35,42:35:1260:42:1487:-110.944,0,-90.5262	0/1:15:2,13:2:72:13:464:-37.5821,0,-2.32127	0/1:80:27,53:27:964:53:1898:-147.016,0,-62.9944	0/1:16:3,13:3:108:13:453:-36.2831,0,-5.25869	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:17:9,8:9:324:8:277:-20.1476,0,-24.3883	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/0:96:96,0:96:3435:0:0:0,-28.8989,-309.363	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:163:66,97:66:2364:97:3443:-261.017,0,-163.95	0/0:109:109,0:109:3891:0:0:0,-32.8123,-350.385	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:47:47,0:47:1666:0:0:0,-14.1484,-150.226	0/0:108:102,6:102:3646:6:216:0,-12.7207,-308.553	0/1:155:45,110:45:1595:110:3880:-302.737,0,-97.1799	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:40:40,0:40:1409:0:0:0,-12.0412,-127.105	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	0/1:146:79,67:79:2823:67:2351:-167.813,0,-210.358	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.786	0/0:103:101,2:101:3582:2:68:0,-24.5484,-316.129	0/0:60:57,3:57:2048:3:104:0,-8.35899,-174.889	0/1:14:8,6:8:284:6:199:-14.021,0,-21.6889	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:117:43,74:43:1519:74:2621:-200.916,0,-101.782	0/0:137:136,1:136:4859:1:36:0,-37.6428,-433.866	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:77:76,1:76:2727:1:36:0,-19.581,-242.074	0/1:50:24,26:24:856:26:913:-67.4325,0,-62.3096	0/0:124:124,0:124:4446:0:0:0,-37.3277,-400.309	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/1:85:34,51:34:1220:51:1742:-131.467,0,-84.5193	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:88:43,45:43:1544:45:1597:-117.528,0,-112.762	0/1:138:67,71:67:2390:71:2462:-180.287,0,-173.814	0/1:80:31,49:31:1116:49:1690:-128.297,0,-76.6693	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:71:71,0:71:2526:0:0:0,-21.3731,-227.591
chr08	4102922	.	TGG	CGG,AGG	676496	PASS	AB=0.478709,0.515255;ABP=38.8863,21.4278;AC=151,37;AF=0.803191,0.196809;AN=188;AO=19887,4744;CIGAR=1X2M,1X2M;DP=24779;DPB=24779.3;DPRA=33.2944,1.12743;EPP=43161,10304.5;EPPR=63.8115;GTI=1;LEN=1,1;MEANALT=2.43011,2.94444;MQM=59.3462,59.9498;MQMR=60;NS=94;NUMALT=2;ODDS=5.77106;PAIRED=0,0;PAIREDR=0;PAO=0.5,0;PQA=18,0;PQR=0;PRO=0;QA=699161,168477;QR=939;RO=28;RPL=9820,2378;RPP=9.67191,3.07621;RPPR=3.0103;RPR=10067,2366;RUN=1,1;SAF=9823,2378;SAP=9.3522,3.07621;SAR=10064,2366;SRF=14;SRP=3.0103;SRR=14;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:133:0,131,0:0:0:131,0:4588,0:-412.694,-39.4349,0,-412.694,-39.4349,-412.694	1/1:349:0,347,0:0:0:347,0:12122,0:-1089.94,-104.457,0,-1089.94,-104.457,-1089.94	1/2:371:0,180,189:0:0:180,189:6384,6702:-1065.82,-546.003,-491.818,-519.808,0,-462.913	1/1:555:0,552,0:0:0:552,0:19506,0:-1754.01,-166.169,0,-1754.01,-166.169,-1754.01	1/2:126:0,63,63:0:0:63,63:2210,2259:-364.405,-184.607,-165.642,-180.153,0,-161.188	1/2:104:0,53,50:0:0:53,50:1830,1772:-293.102,-144.46,-128.505,-148.739,0,-133.687	1/1:247:0,245,1:0:0:245,1:8544,36:-768.215,-73.7524,0,-765.278,-70.8146,-764.977	1/1:461:1,459,1:1:36:459,1:16121,36:-1446.54,-135.235,0,-1443.91,-135.235,-1446.54	1/1:369:0,368,0:0:0:368,0:13048,0:-1173.48,-110.779,0,-1173.48,-110.779,-1173.48	1/1:264:2,258,0:2:70:258,0:9060,0:-808.498,-71.9487,0,-809.1,-77.6657,-814.795	1/1:197:0,195,1:0:0:195,1:6844,21:-615.581,-58.7009,0,-613.993,-57.1319,-613.692	1/1:279:1,277,0:1:33:277,0:9699,0:-869.387,-80.7321,0,-869.688,-83.3853,-872.356	1/1:228:1,227,0:1:27:227,0:7960,0:-713.356,-65.9351,0,-713.657,-68.3338,-715.786	1/1:267:0,267,0:0:0:267,0:9331,0:-839.209,-80.375,0,-839.209,-80.375,-839.209	1/1:215:0,211,1:0:0:211,1:7405,36:-665.943,-63.5173,0,-663.006,-60.5799,-662.705	1/1:254:1,252,0:1:28:252,0:8807,0:-789.648,-73.6358,0,-789.949,-75.8596,-792.167	1/1:181:0,181,0:0:0:181,0:6295,0:-566.417,-54.4864,0,-566.417,-54.4864,-566.417	1/1:153:0,152,0:0:0:152,0:5266,0:-473.704,-45.7566,0,-473.704,-45.7566,-473.704	1/1:118:1,117,0:1:34:117,0:4144,0:-369.657,-32.1226,0,-369.958,-35.2205,-372.716	1/1:550:0,543,1:0:0:543,1:19158,36:-1722.95,-163.459,0,-1720.02,-160.522,-1719.72	1/1:507:1,501,2:1:34:501,2:17683,72:-1587.64,-148.058,0,-1582.07,-144.932,-1584.22	1/2:216:0,59,155:0:0:59,155:2102,5507:-619.884,-448.63,-430.87,-171.25,0,-124.59	1/1:406:0,399,3:0:0:399,3:14093,108:-1267.42,-120.111,0,-1258.61,-111.279,-1257.7	1/2:254:0,132,121:0:0:132,121:4637,4274:-725.061,-347.785,-308.049,-377.268,0,-340.843	1/1:202:0,202,0:0:0:202,0:7070,0:-635.871,-60.8081,0,-635.871,-60.8081,-635.871	1/2:783:3,397,382:3:100:397,382:13891,13505:-2220.32,-1091.8,-980.386,-1121.34,0,-1014.44	1/2:622:0,335,278:0:0:335,278:11768,9853:-1760.31,-802.714,-701.869,-957.632,0,-873.945	1/1:100:0,100,0:0:0:100,0:3533,0:-318.177,-30.103,0,-318.177,-30.103,-318.177	1/1:562:0,561,0:0:0:561,0:19745,0:-1775.51,-168.878,0,-1775.51,-168.878,-1775.51	1/1:296:0,283,13:0:0:283,13:9885,468:-888.95,-85.1915,0,-850.763,-46.6452,-846.85	1/2:357:0,167,185:0:0:167,185:5879,6568:-1013.7,-535.189,-484.917,-478.543,0,-422.852	1/2:34:0,17,14:0:0:17,14:584,504:-88.5415,-41.1293,-36.0118,-47.4115,0,-43.1971	1/1:37:0,37,0:0:0:37,0:1323,0:-119.371,-11.1381,0,-119.371,-11.1381,-119.371	2/2:8:0,0,8:0:0:0,8:0,288:-26.2674,-26.2674,-26.2674,-2.40824,-2.40824,0	1/1:39:0,38,1:0:0:38,1:1351,36:-121.53,-11.4391,0,-118.592,-8.1419,-118.291	1/1:53:0,53,0:0:0:53,0:1861,0:-167.765,-15.9546,0,-167.765,-15.9546,-167.765	1/1:537:1,533,0:1:34:533,0:18619,0:-1671,-157.676,0,-1671.3,-160.449,-1674.05	1/2:348:0,173,175:0:0:173,175:6068,6149:-994.505,-500.818,-448.74,-494.038,0,-441.358	1/2:168:0,68,99:0:0:68,99:2343,3517:-476.948,-286.667,-266.197,-190.358,0,-160.556	1/1:1:0,1,0:0:0:1,0:36,0:-3.52101,-0.30103,0,-3.52101,-0.30103,-3.52101	1/2:348:1,180,167:1:36:180,167:6326,5963:-997.732,-483.196,-431.948,-511.894,0,-464.559	1/2:119:0,47,72:0:0:47,72:1612,2547:-338.333,-207.799,-193.65,-130.88,0,-109.206	1/2:437:0,222,213:0:0:222,213:7834,7605:-1257.09,-619.847,-553.018,-637.239,0,-573.12	1/2:233:0,114,118:0:0:114,118:3975,4194:-664.905,-341.759,-307.441,-323.139,0,-287.617	1/1:160:0,159,0:0:0:159,0:5629,0:-506.098,-47.8638,0,-506.098,-47.8638,-506.098	1/2:327:0,120,204:0:0:120,204:4226,7270:-936.243,-592.596,-556.473,-343.657,0,-282.247	1/2:294:1,130,162:1:27:130,162:4527,5760:-835.113,-467.305,-430.299,-366.017,0,-319.378	1/2:488:0,243,241:0:0:243,241:8612,8588:-1401.45,-700.05,-626.9,-701.436,0,-628.888	1/1:232:0,232,0:0:0:232,0:8199,0:-737.719,-69.839,0,-737.719,-69.839,-737.719	1/1:384:1,383,0:1:36:383,0:13489,0:-1209.93,-111.997,0,-1210.24,-115.294,-1213.17	1/1:293:1,291,0:1:36:291,0:10304,0:-923.384,-84.5974,0,-923.685,-87.5997,-926.623	1/2:14:0,10,4:0:0:10,4:360,140:-41.1209,-11.7405,-8.73016,-29.7332,0,-28.5291	1/2:302:1,154,147:1:36:154,147:5446,5240:-867.351,-424.176,-380.754,-440.535,0,-399.221	1/2:172:0,88,84:0:0:88,84:3084,2997:-495.584,-244.674,-218.183,-251.263,0,-225.977	1/2:36:0,22,14:0:0:22,1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chr08	4130274	.	A	T	86494.1	PASS	AB=0.544512;ABP=31.2341;AC=149;AF=0.809783;AN=184;AO=3989;CIGAR=1X;DP=4744;DPB=4744;DPRA=0;EPP=8665.01;EPPR=1640.3;GTI=0;LEN=1;MEANALT=1.01087;MQM=59.9977;MQMR=59.9947;NS=92;NUMALT=1;ODDS=0.721753;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142223;QR=27041;RO=754;RPL=3989;RPP=8665.01;RPPR=1640.3;RPR=0;RUN=1;SAF=3989;SAP=8665.01;SAR=0;SRF=754;SRP=1640.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:336:-30.5632,-3.0103,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:88:24,64:24:860:64:2283:-179.241,0,-51.2312	1/1:140:0,140:0:0:140:5000:-450.147,-42.1442,0	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/1:8:5,3:5:180:3:99:-6.82834,0,-14.1438	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:147:0,147:0:0:147:5253:-472.906,-44.2514,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:64:0,64:0:0:64:2283:-205.731,-19.2659,0	1/1:51:0,51:0:0:51:1801:-162.37,-15.3525,0	1/1:24:0,24:0:0:24:847:-76.5487,-7.22472,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:18:0,18:0:0:18:642:-58.1097,-5.41854,0	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:79:0,79:0:0:79:2817:-253.768,-23.7814,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	0/1:25:10,15:10:360:15:521:-39.6906,0,-25.2186	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:151:51,100:51:1817:100:3583:-277.221,0,-118.354	0/1:131:55,76:55:1980:76:2707:-204.438,0,-139.04	1/1:18:0,18:0:0:18:644:-58.2904,-5.41854,0	1/1:152:0,152:0:0:152:5415:-487.477,-45.7566,0	1/1:53:3,50:3:108:50:1772:-149.685,-5.87942,0	0/1:57:36,21:36:1288:21:752:-50.8475,0,-99.0649	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:138:0,138:0:0:138:4907:-441.782,-41.5421,0	0/1:49:22,27:22:784:27:948:-70.8814,0,-56.1334	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3825	.:.:.:.:.:.:.:.	0/1:62:19,43:19:684:43:1530:-119.328,0,-43.2265	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	0/1:22:13,9:13:468:9:315:-22.0646,0,-35.837	0/1:36:15,21:15:536:21:748:-56.8082,0,-37.7377	1/1:39:0,39:0:0:39:1362:-122.874,-11.7402,0	0/1:25:8,17:8:288:17:603:-47.0738,0,-18.7417	0/1:19:6,13:6:216:13:453:-35.3801,0,-14.0709	0/1:56:24,32:24:864:32:1140:-86.0515,0,-61.2249	1/1:65:0,65:0:0:65:2311:-208.251,-19.567,0	1/1:121:0,121:0:0:121:4317:-388.706,-36.4246,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:10:3,7:3:104:7:248:-19.6539,0,-6.69251	0/1:40:21,19:21:752:19:684:-49.8491,0,-55.9651	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:83:31,52:31:1116:52:1860:-142.694,0,-75.7662	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:37:0,37:0:0:37:1323:-119.371,-11.1381,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:249:102,147:102:3664:147:5255:-398.131,0,-255.004	1/1:79:0,79:0:0:79:2825:-254.488,-23.7814,0	1/1:50:0,50:0:0:50:1791:-161.472,-15.0515,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:85:0,85:0:0:85:3016:-271.67,-25.5876,0	0/1:80:45,35:45:1620:35:1260:-89.6231,0,-122.008	1/1:16:0,16:0:0:16:552:-50.0029,-4.81648,0	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:19:0,19:0:0:19:669:-60.5339,-5.71957,0	1/1:69:0,69:0:0:69:2444:-220.214,-20.7711,0	0/1:88:50,38:50:1784:38:1368:-96.9302,0,-134.352	1/1:42:0,42:0:0:42:1499:-135.204,-12.6433,0	1/1:142:0,142:0:0:142:5060:-455.543,-42.7463,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:108:4,104:4:144:104:3728:-322.407,-19.1976,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:76:0,75:0:0:75:2687:-241.715,-22.5773,0	0/1:35:21,14:21:752:14:495:-34.347,0,-57.4702	1/1:114:0,114:0:0:114:4079:-367.296,-34.3174,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	0/1:30:15,15:15:540:15:517:-37.8213,0,-39.9056	1/1:72:0,72:0:0:72:2556:-230.289,-21.6742,0	1/1:16:0,16:0:0:16:565:-51.1796,-4.81648,0	0/1:26:12,14:12:432:14:500:-37.5094,0,-31.3944	1/1:46:0,46:0:0:46:1631:-147.078,-13.8474,0	0/1:19:12,7:12:432:7:248:-16.9446,0,-33.5016	0/1:81:47,34:47:1672:34:1220:-85.7234,0,-126.384	0/1:44:34,10:34:1220:10:360:-19.499,0,-96.8615	1/1:160:0,160:0:0:160:5687:-511.949,-48.1648,0	1/1:75:0,75:0:0:75:2667:-240.276,-22.5773,0
chr08	4130288	.	C	T	11356.2	PASS	AB=0.450428;ABP=37.8868;AC=35;AF=0.190217;AN=184;AO=743;CIGAR=1X;DP=4798;DPB=4798;DPRA=0.890901;EPP=1616.41;EPPR=8801.82;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=59.9958;NS=92;NUMALT=1;ODDS=0.719619;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26305;QR=143299;RO=4052;RPL=743;RPP=1616.41;RPPR=8801.82;RPR=0;RUN=1;SAF=743;SAP=1616.41;SAR=0;SRF=4052;SRP=8801.82;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:84:62,22:62:2193:22:777:-44.9638,0,-172.348	0/0:143:142,0:142:5051:0:0:0,-42.7463,-454.465	0/1:5:1,4:1:32:4:135:-10.9774,0,-1.69416	0/1:7:3,4:3:99:4:144:-11.2064,0,-7.12937	0/0:37:37,0:37:1288:0:0:0,-11.1381,-116.218	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/0:148:148,0:148:5243:0:0:0,-44.5524,-472.008	0/0:35:35,0:35:1231:0:0:0,-10.536,-111.093	0/0:67:67,0:67:2357:0:0:0,-20.169,-212.388	0/0:52:52,0:52:1842:0:0:0,-15.6536,-166.059	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/0:46:46,0:46:1602:0:0:0,-13.8474,-144.465	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8116	0/0:76:76,0:76:2679:0:0:0,-22.8783,-241.354	0/0:81:80,0:80:2812:0:0:0,-24.0824,-253	0/1:17:7,10:7:243:10:360:-27.6268,0,-17.09	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/1:25:15,10:15:532:10:360:-25.2186,0,-40.6873	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:154:102,52:102:3611:52:1830:-118.619,0,-278.838	0/1:131:77,54:77:2688:54:1915:-133.192,0,-202.729	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:157:157,0:157:5556:0:0:0,-47.2617,-500.167	0/0:55:52,3:52:1815:3:99:0,-7.32007,-154.391	0/1:58:22,36:22:783:36:1259:-96.1491,0,-53.3332	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	.:.:.:.:.:.:.:.	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:144:144,0:144:5120:0:0:0,-43.3483,-460.944	0/1:46:27,19:27:944:19:680:-47.6818,0,-71.424	0/1:30:13,17:13:468:17:608:-46.0211,0,-33.4287	.:.:.:.:.:.:.:.	0/1:57:40,17:40:1421:17:608:-37.8933,0,-111.027	0/1:19:9,10:9:301:10:360:-27.0247,0,-21.6941	0/1:22:9,13:9:320:13:460:-35.1127,0,-22.5197	0/1:34:21,13:21:743:13:468:-32.2246,0,-56.9583	0/0:40:40,0:40:1412:0:0:0,-12.0412,-127.375	0/1:26:18,8:18:629:8:288:-18.4406,0,-49.107	0/1:19:13,6:13:464:6:216:-14.0709,0,-36.3779	0/1:57:32,25:32:1124:25:896:-63.8016,0,-84.3065	0/0:67:67,0:67:2367:0:0:0,-20.169,-213.286	0/0:123:123,0:123:4332:0:0:0,-37.0267,-390.058	0/0:62:62,0:62:2170:0:0:0,-18.6639,-195.564	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:39:18,21:18:635:21:734:-54.6402,0,-45.7368	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:81:50,31:50:1758:31:1104:-75.2872,0,-134.119	0/1:17:11,6:11:392:6:212:-14.3073,0,-30.5025	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:248:147,101:147:5195:101:3597:-249.281,0,-393.036	0/0:79:79,0:79:2800:0:0:0,-23.7814,-252.239	0/0:52:52,0:52:1829:0:0:0,-15.6536,-164.889	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.991	0/1:79:33,46:33:1163:46:1616:-121.945,0,-81.1948	0/0:17:17,0:17:574:0:0:0,-5.11751,-51.976	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:36:36,0:36:1265:0:0:0,-10.8371,-114.151	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:72:72,0:72:2531:0:0:0,-21.6742,-228.04	0/1:91:40,51:40:1409:51:1806:-135.427,0,-99.7115	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/0:146:145,0:145:5184:0:0:0,-43.6493,-466.341	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:109:105,4:105:3738:4:144:0,-19.4987,-323.308	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:75:75,0:75:2643:0:0:0,-22.5772,-238.116	0/1:39:19,20:19:658:20:707:-52.2144,0,-47.7997	0/0:112:112,0:112:3994:0:0:0,-33.7154,-359.65	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.461	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/1:31:16,15:16:572:15:512:-37.0698,0,-42.4791	0/0:74:74,0:74:2591:0:0:0,-22.2762,-233.439	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:27:15,12:15:504:12:423:-30.2773,0,-37.5504	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/1:19:7,12:7:248:12:417:-32.1406,0,-16.9446	0/1:81:34,47:34:1212:47:1638:-123.321,0,-85.0029	0/1:44:10,34:10:356:34:1216:-96.5012,0,-19.1359	0/0:160:160,0:160:5678:0:0:0,-48.1648,-511.141	0/0:75:75,0:75:2639:0:0:0,-22.5772,-237.756
chr08	4223278	.	G	A	105196	PASS	AB=0.444188;ABP=73.3032;AC=154;AF=0.819149;AN=188;AO=5183;CIGAR=1X;DP=6644;DPB=6644;DPRA=0;EPP=11257.8;EPPR=3166.85;GTI=3;LEN=1;MEANALT=1.04255;MQM=59.9805;MQMR=59.9643;NS=94;NUMALT=1;ODDS=1.23754;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178483;QR=51723;RO=1457;RPL=5183;RPP=11257.8;RPPR=3158.17;RPR=0;RUN=1;SAF=5183;SAP=11257.8;SAR=0;SRF=1456;SRP=3158.17;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1350:-121.794,-11.7402,0	1/1:113:0,113:0:0:113:3843:-346.073,-34.0164,0	0/1:84:50,34:50:1796:34:1189:-82.0264,0,-136.636	1/1:110:1,109:1:36:109:3711:-330.598,-29.515,0	0/1:68:38,30:38:1360:30:1031:-72.6276,0,-102.231	0/1:41:28,13:28:1008:13:460:-29.3931,0,-78.6941	1/1:93:0,93:0:0:93:3155:-284.173,-27.9958,0	1/1:107:0,106:0:0:106:3588:-322.922,-31.9092,0	1/1:66:0,66:0:0:66:2332:-210.141,-19.868,0	1/1:84:3,81:3:108:81:2839:-245.677,-15.2114,0	1/1:46:0,46:0:0:46:1531:-138.072,-13.8474,0	1/1:61:0,61:0:0:61:2113:-190.439,-18.3628,0	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	1/1:78:0,78:0:0:78:2671:-240.634,-23.4803,0	1/1:65:0,65:0:0:65:2261:-203.753,-19.567,0	1/1:51:0,51:0:0:51:1715:-154.629,-15.3525,0	1/1:63:0,63:0:0:63:2134:-192.323,-18.9649,0	1/1:47:0,47:0:0:47:1636:-147.528,-14.1484,0	1/1:26:0,26:0:0:26:889:-80.3204,-7.82678,0	1/1:84:0,84:0:0:84:2881:-259.526,-25.2865,0	1/1:59:0,59:0:0:59:2058:-185.471,-17.7608,0	0/1:62:44,18:44:1572:18:620:-37.4563,0,-123.062	1/1:84:0,84:0:0:84:2864:-257.998,-25.2865,0	0/1:140:67,73:67:2386:73:2491:-182.297,0,-172.852	1/1:60:0,60:0:0:60:2068:-186.39,-18.0618,0	0/1:160:91,69:91:3221:69:2379:-166.201,0,-241.948	0/1:174:87,87:87:3062:87:3019:-219.457,0,-223.43	1/1:18:0,18:0:0:18:618:-55.9408,-5.41854,0	1/1:126:0,126:0:0:126:4352:-391.862,-37.9298,0	1/1:116:3,113:3:108:113:3910:-342.022,-24.8443,0	0/1:93:44,49:44:1572:49:1686:-124.026,0,-113.776	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:13:0,13:0:0:13:456:-41.3732,-3.91339,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:4:0,4:0:0:4:125:-11.5586,-1.20412,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:149:0,149:0:0:149:5181:-466.442,-44.8535,0	0/1:151:93,58:93:3323:58:2006:-135.355,0,-253.832	0/1:50:36,14:36:1255:14:454:-26.1186,0,-98.1972	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	0/1:97:51,46:51:1807:46:1616:-116.529,0,-133.711	0/1:27:15,12:15:527:12:416:-29.6438,0,-39.6324	0/1:84:51,33:51:1807:33:1156:-79.0599,0,-137.624	0/1:63:42,21:42:1492:21:719:-46.0627,0,-115.61	1/1:49:0,49:0:0:49:1666:-150.222,-14.7505,0	0/1:76:45,31:45:1594:31:1077:-74.358,0,-120.87	0/1:90:53,37:53:1860:37:1280:-88.4078,0,-140.584	0/1:137:72,65:72:2560:65:2234:-160.082,0,-189.41	1/1:87:0,87:0:0:87:3015:-271.583,-26.1896,0	1/1:101:0,101:0:0:101:3455:-311.163,-30.404,0	1/1:126:0,126:0:0:126:4341:-390.877,-37.9298,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:87:42,45:42:1487:45:1555:-114.045,0,-107.934	0/1:45:23,22:23:824:22:760:-55.1723,0,-60.937	0/1:10:2,8:2:72:8:280:-22.529,0,-3.82642	0/1:70:33,37:33:1166:37:1308:-96.9494,0,-84.1735	0/1:37:14,23:14:496:23:770:-58.4704,0,-33.8362	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:13:7,6:7:248:6:201:-14.5037,0,-18.7508	1/1:78:0,78:0:0:78:2684:-241.791,-23.4803,0	1/1:92:0,92:0:0:92:3189:-287.237,-27.6948,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:145:77,68:77:2751:68:2332:-166.487,0,-204.182	1/1:154:2,152:2:68:152:5236:-464.93,-39.9009,0	1/1:50:0,50:0:0:50:1707:-153.909,-15.0515,0	1/1:43:0,43:0:0:43:1473:-132.858,-12.9443,0	1/1:76:0,76:0:0:76:2648:-238.568,-22.8783,0	0/1:69:42,26:42:1483:26:901:-60.5728,0,-112.934	1/1:20:0,20:0:0:20:672:-60.7933,-6.0206,0	1/1:56:0,56:0:0:56:1934:-174.333,-16.8577,0	1/1:70:0,70:0:0:70:2445:-220.306,-21.0721,0	1/1:19:0,19:0:0:19:664:-60.0845,-5.71957,0	1/1:79:0,79:0:0:79:2749:-247.655,-23.7814,0	0/1:62:34,28:34:1192:28:973:-69.2162,0,-88.9185	1/1:137:0,137:0:0:137:4741:-426.84,-41.2411,0	1/1:136:0,136:0:0:136:4671:-420.563,-40.9401,0	1/1:81:0,81:0:0:81:2745:-247.29,-24.3834,0	1/1:71:0,71:0:0:71:2450:-220.753,-21.3731,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:53:0,53:0:0:53:1833:-165.249,-15.9546,0	0/1:91:59,32:59:2082:32:1101:-72.0004,0,-160.256	1/1:111:1,110:1:36:110:3784:-338.117,-30.7657,0	1/1:58:0,58:0:0:58:1902:-171.446,-17.4597,0	1/1:63:1,62:1:36:62:2143:-189.538,-15.3666,0	0/1:106:55,51:55:1952:51:1730:-124.071,0,-144.047	1/1:139:3,136:3:108:136:4715:-414.446,-31.768,0	1/1:35:0,35:0:0:35:1193:-107.67,-10.5361,0	0/1:71:35,35:35:1251:35:1224:-89.032,0,-91.4624	1/1:68:0,68:0:0:68:2357:-212.39,-20.47,0	0/1:55:26,29:26:924:29:1020:-75.5555,0,-66.921	0/1:83:41,42:41:1459:42:1434:-104.361,0,-106.62	0/1:43:37,6:37:1310:6:203:-5.65689,0,-105.256	1/1:78:1,76:1:36:76:2615:-231.99,-19.9409,0	1/1:97:0,97:0:0:97:3327:-299.651,-29.1999,0
chr08	4226574	.	A	T	16484.1	PASS	AB=0.451251;ABP=50.8576;AC=34;AF=0.184783;AN=184;AO=1058;CIGAR=1X;DP=6344;DPB=6344;DPRA=1.10229;EPP=2300.43;EPPR=11477.1;GTI=0;LEN=1;MEANALT=1.02381;MQM=59.9263;MQMR=59.9924;NS=92;NUMALT=1;ODDS=0.311788;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37497;QR=188758;RO=5284;RPL=0;RPP=2300.43;RPPR=11477.1;RPR=1058;RUN=1;SAF=0;SAP=2300.43;SAR=1058;SRF=0;SRP=11477.1;SRR=5284;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:91:91,0:91:3237:0:0:0,-27.3937,-291.551	0/1:112:59,53:59:2097:53:1888:-136.483,0,-155.283	0/0:170:170,0:170:6073:0:0:0,-51.1751,-546.669	0/1:43:19,24:19:680:24:852:-64.0561,0,-48.5849	0/1:33:11,22:11:396:22:788:-61.3108,0,-26.0488	0/0:88:88,0:88:3113:0:0:0,-26.4906,-280.389	0/0:97:97,0:97:3432:0:0:0,-29.1999,-309.092	0/0:86:86,0:86:3079:0:0:0,-25.8886,-277.338	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:89:89,0:89:3173:0:0:0,-26.7917,-285.793	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.133	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:31:30,1:30:1080:1:20:0,-7.3322,-95.5135	0/0:23:22,1:22:788:1:36:0,-3.32541,-67.6465	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:91:91,0:91:3242:0:0:0,-27.3937,-292.001	0/0:134:134,0:134:4779:0:0:0,-40.338,-430.265	0/1:61:21,40:21:748:40:1409:-108.742,0,-49.2825	0/0:82:81,1:81:2908:1:21:0,-22.5845,-259.855	0/1:33:13,20:13:468:20:716:-54.8337,0,-32.5257	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.826	0/1:216:126,90:126:4508:90:3194:-222.633,0,-340.866	0/1:169:103,66:103:3695:66:2320:-158.188,0,-281.872	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:204:203,1:203:7264:1:21:0,-59.3102,-651.71	0/0:89:85,4:85:3039:4:144:0,-13.4781,-260.426	0/1:87:45,41:45:1611:41:1455:-104.997,0,-119.031	.:.:.:.:.:.:.:.	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	.:.:.:.:.:.:.:.	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:131:131,0:131:4672:0:0:0,-39.4349,-420.641	0/1:162:109,53:109:3882:53:1887:-121.341,0,-300.806	0/1:28:19,9:19:680:9:320:-20.7135,0,-53.1003	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:62:39,23:39:1404:23:805:-54.104,0,-107.995	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3601	0/1:110:55,55:55:1963:55:1956:-143.201,0,-143.831	0/1:35:16,19:16:576:19:684:-51.3543,0,-41.6389	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:88:53,35:53:1880:35:1248:-86.1342,0,-142.985	0/1:85:53,32:53:1904:32:1140:-77.3135,0,-146.05	0/1:103:63,40:63:2234:40:1416:-96.7313,0,-170.314	0/0:82:82,0:82:2914:0:0:0,-24.6845,-262.495	0/0:97:97,0:97:3463:0:0:0,-29.1999,-311.882	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:96:56,40:56:2008:40:1407:-98.0276,0,-152.094	0/1:44:27,17:27:953:17:608:-41.8067,0,-72.838	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:94:51,43:51:1836:43:1514:-108.252,0,-137.224	0/1:50:26,24:26:927:24:842:-61.0468,0,-68.6959	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:8,4:8:288:4:136:-8.96318,0,-22.655	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:76:46,30:46:1652:30:1058:-72.0228,0,-126.09	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:54:53,0:53:1900:0:0:0,-15.9546,-170.918	0/0:132:130,2:130:4668:2:72:0,-32.8992,-413.443	0/1:102:40,62:40:1431:62:2208:-168.28,0,-98.3818	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.111	0/0:46:46,0:46:1638:0:0:0,-13.8474,-147.707	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:119:119,0:119:4251:0:0:0,-35.8226,-382.769	0/1:78:47,31:47:1692:31:1104:-76.1903,0,-129.087	0/0:111:111,0:111:3951:0:0:0,-33.4143,-355.78	0/0:118:118,0:118:4216:0:0:0,-35.5215,-379.619	0/0:113:112,1:112:4011:1:36:0,-30.4181,-357.58	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:58:57,1:57:2034:1:36:0,-13.8615,-179.733	0/1:64:37,27:37:1303:27:956:-67.0898,0,-98.3047	0/0:122:122,0:122:4348:0:0:0,-36.7257,-391.494	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:29:10,19:10:352:19:680:-52.7984,0,-23.2883	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/1:56:28,28:28:995:28:1000:-73.4577,0,-73.0063	0/0:79:79,0:79:2812:0:0:0,-23.7814,-253.321	0/1:23:14,9:14:504:9:316:-21.8552,0,-38.7744	0/1:82:45,37:45:1591:37:1316:-94.0573,0,-118.795	0/1:42:12,30:12:432:30:1072:-84.1492,0,-26.5779	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.217	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253
chr08	4226583	.	C	A	16753.1	PASS	AB=0.446681;ABP=60.6692;AC=34;AF=0.182796;AN=186;AO=1051;CIGAR=1X;DP=6382;DPB=6382;DPRA=1.05038;EPP=2276.55;EPPR=11542.2;GTI=0;LEN=1;MEANALT=1.02564;MQM=59.9334;MQMR=59.9944;NS=93;NUMALT=1;ODDS=0.376606;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37654;QR=190641;RO=5330;RPL=1;RPP=2276.55;RPPR=11542.2;RPR=1050;RUN=1;SAF=0;SAP=2285.23;SAR=1051;SRF=0;SRP=11577;SRR=5330;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/1:113:59,54:59:2109:54:1932:-140.14,0,-156.061	0/0:170:170,0:170:6093:0:0:0,-51.1751,-548.468	0/1:44:20,24:20:720:24:856:-64.1158,0,-51.8835	0/1:34:12,22:12:432:22:792:-61.3707,0,-28.9862	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.312	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/0:63:63,0:63:2221:0:0:0,-18.9649,-200.151	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:23:22,1:22:792:1:36:0,-3.32541,-68.0074	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:94:94,0:94:3384:0:0:0,-28.2968,-304.774	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.995	0/1:62:22,40:22:784:40:1440:-111.234,0,-52.2201	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:32:12,20:12:432:20:720:-55.4958,0,-29.5882	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.275	0/1:217:128,89:128:4570:89:3196:-222.511,0,-346.139	0/1:168:103,65:103:3684:65:2339:-160.196,0,-281.186	0/0:16:16,0:16:546:0:0:0,-4.81648,-49.4593	0/0:204:204,0:204:7308:0:0:0,-61.4101,-657.767	0/0:90:86,4:86:3087:4:144:0,-13.7791,-264.743	0/1:84:45,39:45:1612:39:1385:-99.6603,0,-120.084	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:135:135,0:135:4833:0:0:0,-40.639,-435.123	0/1:167:112,55:112:4020:55:1963:-126.673,0,-311.716	0/1:28:19,9:19:684:9:313:-20.0762,0,-53.4615	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:62:39,23:39:1389:23:824:-55.8195,0,-106.643	0/1:23:11,12:11:381:12:432:-32.2975,0,-27.6969	0/1:114:56,58:56:1997:58:2084:-153.511,0,-145.685	0/1:38:18,20:18:648:20:711:-52.8765,0,-47.2127	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/1:87:54,33:54:1917:33:1188:-81.039,0,-146.616	0/1:85:53,32:53:1904:32:1137:-77.0412,0,-146.05	0/1:103:65,38:65:2317:38:1368:-92.4147,0,-177.783	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.679	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:89:89,0:89:3172:0:0:0,-26.7917,-285.703	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:97:56,41:56:2012:41:1476:-103.936,0,-152.153	0/1:47:30,17:30:1080:17:608:-40.9036,0,-83.3648	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:95:52,43:52:1845:43:1540:-110.291,0,-137.73	0/1:51:27,24:27:972:24:860:-62.3693,0,-72.4454	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:71:71,0:71:2514:0:0:0,-21.3731,-226.509	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.354	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:77:47,30:47:1673:30:1072:-72.5911,0,-127.676	0/0:113:113,0:113:4032:0:0:0,-34.0164,-363.067	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.715	0/0:133:132,1:132:4721:1:36:0,-36.4387,-421.45	0/1:100:40,60:40:1432:60:2137:-162.493,0,-99.0746	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.99	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:118:118,0:118:4244:0:0:0,-35.5215,-382.137	0/1:76:46,30:46:1647:30:1080:-74.635,0,-125.64	0/0:112:112,0:112:3962:0:0:0,-33.7154,-356.769	0/0:119:119,0:119:4269:0:0:0,-35.8226,-384.385	0/0:115:114,1:114:4066:1:36:0,-31.0202,-362.526	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:57:56,1:56:1997:1:36:0,-13.5604,-176.404	0/1:64:37,26:37:1328:26:921:-63.8807,0,-100.498	0/0:121:121,0:121:4331:0:0:0,-36.4246,-389.965	0/0:47:47,0:47:1674:0:0:0,-14.1484,-150.946	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:30:11,19:11:396:19:684:-52.8585,0,-26.9518	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:58:30,28:30:1076:28:1008:-73.5766,0,-79.6931	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:81:44,37:44:1580:37:1328:-95.4388,0,-118.108	0/1:42:12,30:12:423:30:1072:-84.1492,0,-25.7618	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.893
chr08	4226610	.	A	G	115456	PASS	AB=0.553402;ABP=60.5272;AC=150;AF=0.815217;AN=184;AO=5320;CIGAR=1X;DP=6370;DPB=6370;DPRA=0;EPP=11555.2;EPPR=2272.2;GTI=1;LEN=1;MEANALT=1.05435;MQM=59.9898;MQMR=59.933;NS=92;NUMALT=1;ODDS=0.198525;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190091;QR=37435;RO=1045;RPL=5320;RPP=11555.2;RPPR=2272.2;RPR=0;RUN=1;SAF=0;SAP=11555.2;SAR=5320;SRF=0;SRP=2272.2;SRR=1045;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	1/1:88:0,88:0:0:88:3129:-281.836,-26.4906,0	0/1:112:52,60:52:1872:60:2146:-159.692,0,-135.044	1/1:171:0,171:0:0:171:6097:-548.832,-51.4761,0	0/1:44:24,20:24:860:20:712:-51.1613,0,-64.4765	0/1:33:21,12:21:748:12:432:-29.2872,0,-57.7113	1/1:85:0,85:0:0:85:3048:-274.541,-25.5876,0	1/1:99:0,99:0:0:99:3524:-317.369,-29.802,0	1/1:84:0,84:0:0:84:2990:-269.332,-25.2865,0	1/1:64:0,64:0:0:64:2274:-204.921,-19.2659,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:55:0,55:0:0:55:1967:-177.304,-16.5567,0	1/1:31:0,31:0:0:31:1116:-100.744,-9.33193,0	1/1:24:1,23:1:36:23:824:-70.885,-3.62645,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:92:0,92:0:0:92:3284:-295.78,-27.6948,0	1/1:136:0,135:0:0:135:4816:-433.237,-40.6391,0	0/1:60:39,21:39:1396:21:748:-49.5835,0,-107.877	1/1:82:0,82:0:0:82:2932:-264.115,-24.6845,0	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4958	1/1:68:0,68:0:0:68:2428:-218.767,-20.47,0	0/1:212:89,123:89:3162:123:4396:-331.995,0,-220.956	0/1:168:65,103:65:2340:103:3683:-281.098,0,-160.286	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:204:0,203:0:0:203:7274:-654.35,-61.1091,0	1/1:91:4,87:4:144:87:3120:-267.713,-14.0801,0	0/1:84:39,45:39:1404:45:1612:-120.084,0,-101.373	.:.:.:.:.:.:.:.	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:133:0,133:0:0:133:4755:-428.108,-40.037,0	0/1:164:53,111:53:1904:111:3980:-309.021,0,-122.269	0/1:28:9,19:9:324:19:684:-53.4615,0,-21.077	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:62:23,39:23:809:39:1404:-107.995,0,-54.4644	0/1:23:12,11:12:432:11:392:-28.6964,0,-32.2975	0/1:113:56,57:56:2008:57:2032:-149.136,0,-146.972	0/1:37:19,18:19:669:18:648:-47.5138,0,-49.3958	1/1:44:0,44:0:0:44:1562:-140.87,-13.2453,0	0/1:88:34,54:34:1220:54:1924:-146.946,0,-83.6162	0/1:86:33,53:33:1180:53:1904:-145.749,0,-80.6113	0/1:103:38,65:38:1368:65:2328:-178.774,0,-92.4147	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:97:0,96:0:0:96:3444:-309.813,-28.8989,0	1/1:89:0,89:0:0:89:3175:-285.974,-26.7917,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:96:40,56:40:1432:56:1996:-151.015,0,-100.279	0/1:46:16,30:16:576:30:1072:-82.9451,0,-38.3276	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:93:43,50:43:1544:50:1788:-133.207,0,-111.253	0/1:51:24,27:24:852:27:968:-72.0848,0,-61.6479	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	1/1:71:0,71:0:0:71:2528:-227.772,-21.3731,0	1/1:73:0,73:0:0:73:2602:-234.428,-21.9752,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:78:31,47:31:1100:47:1688:-128.727,0,-74.8081	1/1:114:0,114:0:0:114:4071:-366.577,-34.3174,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:135:2,133:2:72:133:4760:-421.721,-33.8023,0	0/1:102:62,40:62:2224:40:1424:-97.7524,0,-169.719	1/1:31:0,31:0:0:31:1098:-99.1286,-9.33193,0	1/1:66:0,66:0:0:66:2356:-212.287,-19.868,0	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:122:0,121:0:0:121:4306:-387.358,-36.4246,0	0/1:77:30,47:30:1076:47:1684:-128.668,0,-73.9735	1/1:112:0,112:0:0:112:4011:-361.178,-33.7154,0	1/1:117:0,117:0:0:117:4180:-376.383,-35.2205,0	1/1:117:1,116:1:36:116:4148:-369.906,-31.6222,0	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:57:1,56:1:36:56:2002:-176.854,-13.5604,0	0/1:63:26,37:26:936:37:1301:-98.4252,0,-65.5946	1/1:120:0,120:0:0:120:4262:-383.759,-36.1236,0	1/1:47:0,47:0:0:47:1671:-150.677,-14.1484,0	1/1:65:0,65:0:0:65:2321:-209.148,-19.567,0	0/1:30:19,11:19:680:11:387:-26.135,0,-52.4979	1/1:78:0,78:0:0:78:2760:-248.642,-23.4803,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:59:28,31:28:1008:31:1108:-82.2702,0,-73.2756	1/1:80:0,80:0:0:80:2845:-256.287,-24.0824,0	0/1:23:9,13:9:324:13:468:-35.4772,0,-22.5234	0/1:82:37,45:37:1332:45:1604:-119.966,0,-95.4979	0/1:41:30,11:30:1071:11:392:-23.2778,0,-84.3594	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	1/1:70:0,70:0:0:70:2499:-225.162,-21.0721,0
chr08	4226768	.	T	A	108172	PASS	AB=0.441165;ABP=79.4101;AC=149;AF=0.801075;AN=186;AO=5037;CIGAR=1X;DP=6465;DPB=6465;DPRA=0;EPP=10940.7;EPPR=3099.53;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.9865;MQMR=59.9972;NS=93;NUMALT=1;ODDS=0.806855;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179839;QR=50463;RO=1426;RPL=5037;RPP=10940.7;RPPR=3099.53;RPR=0;RUN=1;SAF=0;SAP=10940.7;SAR=5037;SRF=0;SRP=3099.53;SRR=1426;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1676:-151.04,-14.1484,0	1/1:35:0,35:0:0:35:1245:-112.353,-10.5361,0	0/1:124:84,40:84:2951:40:1438:-92.3901,0,-228.494	1/1:172:0,172:0:0:172:6135:-552.251,-51.7772,0	0/1:59:32,27:32:1109:27:960:-68.9555,0,-82.354	0/1:40:33,7:33:1168:7:252:-10.9878,0,-93.386	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	1/1:87:1,86:1:36:86:3058:-271.849,-22.5913,0	1/1:70:0,70:0:0:70:2480:-223.453,-21.0721,0	1/1:53:0,53:0:0:53:1884:-169.839,-15.9546,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	1/1:62:0,62:0:0:62:2211:-199.254,-18.6639,0	1/1:25:0,25:0:0:25:877:-79.2452,-7.52575,0	1/1:72:0,72:0:0:72:2556:-230.289,-21.6742,0	1/1:53:0,53:0:0:53:1881:-169.567,-15.9546,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:29:0,29:0:0:29:1023:-92.3817,-8.72987,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:100:0,100:0:0:100:3568:-321.329,-30.103,0	1/1:91:0,91:0:0:91:3248:-292.542,-27.3937,0	0/1:84:58,26:58:2064:26:932:-58.9123,0,-160.745	1/1:89:0,89:0:0:89:3184:-286.784,-26.7917,0	0/1:36:13,23:13:460:23:824:-63.6462,0,-30.8983	1/1:51:1,50:1:21:50:1772:-157.663,-13.2526,0	0/1:214:124,90:124:4386:90:3194:-223.263,0,-330.495	0/1:197:115,82:115:4061:82:2925:-204.181,0,-306.378	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:152:0,152:0:0:152:5426:-488.471,-45.7566,0	1/1:76:2,74:2:72:74:2627:-229.841,-16.0416,0	0/1:57:27,30:27:956:30:1076:-79.9941,0,-69.197	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:20:0,20:0:0:20:709:-64.1355,-6.0206,0	1/1:207:0,207:0:0:207:7422:-668.023,-62.3132,0	0/1:80:42,38:42:1462:38:1362:-98.798,0,-107.788	0/1:39:21,18:21:744:18:644:-46.5504,0,-55.5442	.:.:.:.:.:.:.:.	0/1:121:86,35:86:3045:35:1256:-76.9207,0,-237.856	0/1:24:15,9:15:540:9:306:-20.6439,0,-41.7118	0/1:97:41,56:41:1464:56:2008:-151.793,0,-102.856	0/1:44:26,18:26:917:18:636:-44.3227,0,-69.5993	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:90:50,40:50:1772:40:1415:-100.555,0,-132.67	0/1:70:30,40:30:1072:40:1436:-108.275,0,-75.7204	0/1:143:73,70:73:2596:70:2504:-182.565,0,-190.84	1/1:85:0,85:0:0:85:3023:-272.301,-25.5876,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:112:66,46:66:2341:46:1652:-115.253,0,-177.233	0/1:64:32,32:32:1144:32:1140:-83.6433,0,-84.0036	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:80:46,34:46:1620:34:1224:-86.3846,0,-122.007	0/1:40:22,18:22:776:18:644:-46.2494,0,-58.121	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	1/1:50:0,50:0:0:50:1781:-160.57,-15.0515,0	1/1:91:0,91:0:0:91:3244:-292.183,-27.3937,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:190:84,106:84:2985:106:3800:-285.002,0,-211.686	1/1:91:0,91:0:0:91:3248:-292.542,-27.3937,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:55:0,55:0:0:55:1956:-176.316,-16.5567,0	1/1:95:2,93:2:72:93:3312:-291.461,-21.7611,0	0/1:96:65,31:65:2294:31:1100:-70.4114,0,-177.82	0/1:16:2,14:2:72:14:495:-40.0666,0,-2.02024	1/1:33:0,33:0:0:33:1180:-106.462,-9.93399,0	1/1:65:0,65:0:0:65:2321:-209.149,-19.567,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:127:0,127:0:0:127:4529:-407.777,-38.2308,0	0/1:56:28,28:28:988:28:996:-73.0972,0,-72.3762	1/1:71:0,71:0:0:71:2531:-228.041,-21.3731,0	1/1:159:0,159:0:0:159:5659:-509.433,-47.8638,0	1/1:67:0,67:0:0:67:2384:-214.818,-20.169,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	1/1:84:0,84:0:0:84:2990:-269.332,-25.2865,0	0/1:77:41,36:41:1464:36:1284:-92.6841,0,-108.877	1/1:178:0,177:0:0:177:6336:-569.972,-53.2823,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:88:0,88:0:0:88:3137:-282.555,-26.4906,0	0/1:39:19,20:19:680:20:711:-52.5755,0,-49.789	1/1:87:0,87:0:0:87:3107:-279.857,-26.1896,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:62:37,24:37:1293:24:855:-58.5477,0,-97.9466	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	0/1:19:10,9:10:341:9:324:-23.7863,0,-25.2982	0/1:70:30,40:30:1068:40:1436:-108.466,0,-75.36	0/1:64:43,21:43:1533:21:752:-48.7403,0,-118.995	1/1:134:1,133:1:36:133:4764:-425.319,-36.7397,0	1/1:127:0,127:0:0:127:4542:-408.946,-38.2308,0
chr08	4232269	.	A	C	153167	PASS	AB=0.508447;ABP=5.28473;AC=152;AF=0.808511;AN=188;AO=7113;CIGAR=1X;DP=8939;DPB=8939;DPRA=0;EPP=15327.3;EPPR=3961.6;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9727;MQMR=59.9912;NS=94;NUMALT=1;ODDS=1.6041;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253830;QR=65201;RO=1823;RPL=7099;RPP=15327.3;RPPR=3961.6;RPR=14;RUN=1;SAF=0;SAP=15448.7;SAR=7113;SRF=0;SRP=3961.6;SRR=1823;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:88:0,88:0:0:88:3125:-281.475,-26.4906,0	1/1:96:0,96:0:0:96:3417:-307.742,-28.8989,0	0/1:200:86,114:86:3092:114:4024:-302.141,0,-218.301	1/1:166:0,166:0:0:166:5939:-534.618,-49.971,0	0/1:75:35,40:35:1256:40:1428:-106.24,0,-90.768	0/1:27:14,13:14:500:13:442:-31.9741,0,-37.2084	1/1:75:1,74:1:36:74:2656:-235.687,-18.979,0	1/1:170:1,169:1:36:169:6011:-536.33,-47.5768,0	1/1:116:0,116:0:0:116:4130:-371.878,-34.9195,0	1/1:79:0,79:0:0:79:2830:-254.939,-23.7814,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:96:0,96:0:0:96:3452:-310.891,-28.8989,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:129:0,129:0:0:129:4605:-414.614,-38.8329,0	1/1:221:0,221:0:0:221:7899:-710.935,-66.5276,0	0/1:154:91,63:91:3260:63:2253:-156.672,0,-247.262	1/1:87:0,87:0:0:87:3084:-277.782,-26.1896,0	0/1:80:42,38:42:1489:38:1349:-97.6256,0,-110.22	1/1:72:0,72:0:0:72:2557:-230.379,-21.6742,0	0/1:281:128,153:128:4588:153:5500:-410.534,0,-328.495	0/1:275:107,168:107:3824:168:6015:-458.67,0,-261.574	1/1:24:0,24:0:0:24:849:-76.7278,-7.22472,0	1/1:215:0,215:0:0:215:7605:-684.49,-64.7215,0	1/1:127:3,124:3:104:124:4441:-390.156,-28.528,0	0/1:108:61,47:61:2165:47:1675:-118.526,0,-162.604	0/1:16:8,8:8:288:8:273:-20.0837,0,-21.4509	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:22:0,21:0:0:21:752:-67.6465,-6.32163,0	1/1:161:0,161:0:0:161:5777:-520.041,-48.4658,0	0/1:186:95,91:95:3393:91:3260:-237.629,0,-249.592	0/1:40:21,18:21:756:18:648:-46.637,0,-56.353	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:108:55,53:55:1976:53:1900:-138.767,0,-145.603	0/1:40:23,17:23:824:17:612:-43.3722,0,-62.4421	0/1:165:79,86:79:2813:86:3072:-227.039,0,-203.739	0/1:55:23,32:23:819:32:1148:-87.0708,0,-57.4749	1/1:47:0,47:0:0:47:1683:-151.756,-14.1484,0	0/1:173:54,119:54:1932:119:4223:-328.172,0,-122.055	0/1:147:72,75:72:2588:75:2692:-198.273,0,-188.917	0/1:182:108,74:108:3876:74:2633:-182.429,0,-294.246	1/1:98:0,98:0:0:98:3494:-314.668,-29.5009,0	1/1:113:0,113:0:0:113:4020:-361.987,-34.0164,0	1/1:150:0,150:0:0:150:5336:-480.375,-45.1545,0	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:122:70,52:70:2504:52:1864:-131.314,0,-188.887	0/1:82:43,39:43:1544:39:1396:-101.255,0,-114.569	0/1:28:18,10:18:648:10:360:-24.3155,0,-50.223	0/1:101:43,58:43:1548:58:2084:-157.426,0,-109.209	0/1:59:32,27:32:1148:27:956:-68.595,0,-85.8691	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	1/1:70:0,70:0:0:70:2496:-224.759,-21.0721,0	1/1:96:0,96:0:0:96:3394:-305.675,-28.8989,0	1/1:19:0,19:0:0:19:669:-60.5339,-5.71957,0	0/1:164:55,109:55:1953:109:3890:-300.904,0,-126.675	1/1:229:1,228:1:36:228:8169:-731.493,-65.3376,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:93:0,93:0:0:93:3296:-296.858,-27.9958,0	1/1:197:4,193:4:144:193:6887:-606.582,-45.9893,0	0/1:192:134,58:134:4796:58:2038:-125.891,0,-373.998	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:58:0,58:0:0:58:2050:-184.768,-17.4597,0	1/1:42:1,41:1:36:41:1476:-129.538,-9.04499,0	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	1/1:188:0,187:0:0:187:6624:-595.881,-56.2926,0	0/1:101:47,54:47:1680:54:1905:-141.321,0,-121.083	1/1:163:0,163:0:0:163:5810:-523.013,-49.0679,0	1/1:165:1,164:1:36:164:5825:-520.765,-46.0717,0	1/1:129:0,129:0:0:129:4613:-415.332,-38.8329,0	1/1:75:4,71:4:144:71:2544:-215.897,-9.26363,0	0/1:25:20,5:20:720:5:180:-9.02631,0,-57.603	1/1:111:0,111:0:0:111:3984:-358.749,-33.4143,0	0/1:120:48,72:48:1690:72:2565:-194.975,0,-116.259	1/1:284:3,281:3:93:281:10039:-894.77,-76.8158,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	0/1:42:21,21:21:752:21:756:-55.724,0,-55.363	1/1:90:0,90:0:0:90:3209:-289.032,-27.0927,0	1/1:19:0,19:0:0:19:679:-61.4388,-5.71957,0	0/1:70:35,35:35:1256:35:1244:-91.1906,0,-92.2732	1/1:58:1,57:1:21:57:2040:-181.772,-15.3598,0	0/1:33:15,18:15:536:18:648:-48.7179,0,-38.6408	0/1:104:57,47:57:2033:47:1669:-119.188,0,-151.933	0/1:67:39,28:39:1404:28:1004:-70.5069,0,-106.49	1/1:100:0,100:0:0:100:3561:-320.698,-30.103,0	1/1:87:0,87:0:0:87:3132:-282.105,-26.1896,0
chr08	4235731	.	G	A	148550	PASS	AB=0.482057;ABP=12.3611;AC=152;AF=0.808511;AN=188;AO=6941;CIGAR=1X;DP=8681;DPB=8681;DPRA=0;EPP=15023.1;EPPR=3742.37;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9784;MQMR=59.9712;NS=94;NUMALT=1;ODDS=3.8278;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246053;QR=62034;RO=1738;RPL=6;RPP=15023.1;RPPR=3725.09;RPR=6935;RUN=1;SAF=0;SAP=15075.2;SAR=6941;SRF=2;SRP=3759.68;SRR=1736;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:94:0,94:0:0:94:3314:-298.481,-28.2968,0	0/1:110:43,67:43:1519:67:2385:-181.793,0,-103.853	1/1:237:0,237:0:0:237:8385:-754.504,-71.3441,0	0/1:78:36,42:36:1288:42:1478:-109.833,0,-92.7432	0/1:37:30,7:30:1076:7:224:-9.33471,0,-86.0147	1/1:140:0,140:0:0:140:4965:-447,-42.1442,0	1/1:72:0,72:0:0:72:2525:-227.5,-21.6742,0	1/1:74:0,74:0:0:74:2620:-236.037,-22.2762,0	1/1:84:0,83:0:0:83:2939:-264.495,-24.9855,0	1/1:43:0,43:0:0:43:1528:-137.813,-12.9443,0	1/1:89:0,89:0:0:89:3139:-282.736,-26.7917,0	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	1/1:58:0,58:0:0:58:2057:-185.4,-17.4597,0	1/1:74:0,74:0:0:74:2621:-236.134,-22.2762,0	1/1:61:0,61:0:0:61:2150:-193.765,-18.3628,0	1/1:67:0,67:0:0:67:2386:-214.997,-20.169,0	1/1:61:0,61:0:0:61:2166:-195.206,-18.3628,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:238:0,238:0:0:238:8428:-758.532,-71.6451,0	1/1:157:0,157:0:0:157:5568:-501.248,-47.2617,0	0/1:124:74,50:74:2641:50:1784:-123.515,0,-200.607	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	0/1:29:14,15:14:500:15:509:-37.4013,0,-36.6063	1/1:65:0,65:0:0:65:2316:-208.701,-19.567,0	0/1:294:163,131:163:5816:131:4629:-327.645,0,-435.05	0/1:252:119,133:119:4267:133:4749:-351.706,0,-308.347	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:370:0,370:0:0:370:13099:-1178.73,-111.381,0	1/1:100:0,100:0:0:100:3565:-321.058,-30.103,0	0/1:63:29,34:29:1044:34:1216:-90.7817,0,-75.3099	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:210:0,210:0:0:210:7440:-669.647,-63.2163,0	0/1:161:80,81:80:2831:81:2872:-210.25,0,-206.294	0/1:72:35,37:35:1245:37:1312:-96.7075,0,-90.6786	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:126:56,70:56:2000:70:2461:-183.805,0,-142.344	0/1:113:68,45:68:2431:45:1620:-112.074,0,-185.029	0/1:118:64,54:64:2288:54:1903:-136.026,0,-170.66	0/1:90:47,43:47:1688:43:1536:-111.44,0,-125.114	1/1:61:0,61:0:0:61:2162:-194.843,-18.3628,0	0/1:136:79,57:79:2814:57:2024:-141.493,0,-212.559	0/1:70:36,34:36:1287:34:1194:-86.6911,0,-95.0607	0/1:143:75,68:75:2692:68:2411:-174.199,0,-199.477	1/1:142:0,142:0:0:142:5034:-453.211,-42.7463,0	1/1:136:0,136:0:0:136:4827:-434.585,-40.9401,0	1/1:90:0,90:0:0:90:3127:-281.659,-27.0927,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:98:43,55:43:1516:55:1952:-146.455,0,-107.229	0/1:37:23,14:23:816:14:500:-34.1981,0,-62.6236	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:113:49,64:49:1748:64:2279:-171.355,0,-123.588	0/1:45:25,20:25:896:20:712:-50.8603,0,-67.414	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	1/1:64:0,64:0:0:64:2270:-204.562,-19.2659,0	1/1:115:1,114:1:36:114:4061:-362.079,-31.0202,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:204:104,99:104:3732:99:3523:-255.812,0,-274.611	1/1:169:0,169:0:0:169:5974:-537.773,-50.8741,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:65:0,65:0:0:65:2303:-207.531,-19.567,0	1/1:141:1,140:1:36:140:4944:-441.515,-38.847,0	0/1:64:36,28:36:1283:28:1004:-71.4099,0,-96.5067	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:60:0,60:0:0:60:2132:-192.149,-18.0618,0	1/1:64:0,64:0:0:64:2268:-204.381,-19.2659,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:107:0,107:0:0:107:3810:-343.098,-32.2102,0	0/1:95:52,43:52:1852:43:1535:-109.844,0,-138.362	1/1:119:0,119:0:0:119:4199:-378.095,-35.8226,0	1/1:190:1,189:1:36:189:6670:-596.788,-53.5974,0	1/1:60:0,60:0:0:60:2119:-190.976,-18.0618,0	1/1:89:1,88:1:36:88:3117:-276.966,-23.1934,0	0/1:16:3,13:3:108:13:464:-37.281,0,-5.25869	1/1:127:1,126:1:36:126:4486:-400.311,-34.6325,0	0/1:154:70,84:70:2504:84:2969:-221.084,0,-179.254	1/1:188:0,188:0:0:188:6687:-601.909,-56.5936,0	1/1:126:0,126:0:0:126:4473:-402.74,-37.9298,0	1/1:62:0,62:0:0:62:2202:-198.444,-18.6639,0	0/1:106:63,43:63:2228:43:1507:-104.01,0,-168.873	1/1:140:2,138:2:72:138:4873:-431.889,-35.3075,0	1/1:57:0,57:0:0:57:1991:-179.461,-17.1587,0	0/1:89:44,45:44:1567:45:1600:-117.498,0,-114.529	1/1:87:0,87:0:0:87:3096:-278.869,-26.1896,0	0/1:46:23,23:23:824:23:819:-60.1842,0,-60.6359	0/1:113:56,57:56:1993:57:2017:-147.785,0,-145.622	0/1:97:61,36:61:2180:36:1275:-85.8524,0,-167.266	1/1:75:0,75:0:0:75:2632:-237.125,-22.5773,0	1/1:102:0,102:0:0:102:3623:-326.275,-30.7051,0
chr08	4235739	.	A	G	29742	PASS	AB=0.518676;ABP=12.9867;AC=36;AF=0.191489;AN=188;AO=1717;CIGAR=1X;DP=8593;DPB=8593;DPRA=1.09967;EPP=3593.75;EPPR=14359.8;GTI=0;LEN=1;MEANALT=1.04545;MQM=59.9639;MQMR=59.9917;NS=94;NUMALT=1;ODDS=2.66925;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61182;QR=245962;RO=6873;RPL=1703;RPP=3610.82;RPPR=14359.8;RPR=14;RUN=1;SAF=2;SAP=3714.08;SAR=1715;SRF=0;SRP=14927.5;SRR=6873;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.582	0/1:108:66,42:66:2349:42:1504:-103.143,0,-179.156	0/0:239:239,0:239:8552:0:0:0,-71.9462,-769.122	0/1:76:40,36:40:1424:36:1292:-93.7055,0,-105.579	0/1:36:7,29:7:252:29:1027:-81.9051,0,-12.1919	0/0:137:137,0:137:4912:0:0:0,-41.2411,-442.23	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.978	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:88:87,1:87:3094:1:36:0,-22.8924,-275.087	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:232:232,0:232:8307:0:0:0,-69.839,-747.637	0/0:155:155,0:155:5552:0:0:0,-46.6596,-499.804	0/1:120:49,71:49:1748:71:2513:-190.298,0,-121.481	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:27:13,14:13:464:14:496:-36.8464,0,-33.9697	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/1:292:130,162:130:4648:162:5782:-432.595,0,-330.582	0/1:253:131,122:131:4676:122:4350:-315.512,0,-344.842	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:369:369,0:369:13216:0:0:0,-111.08,-1189.24	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.646	0/1:63:33,30:33:1176:30:1071:-77.7367,0,-87.1829	0/1:13:4,9:4:144:9:305:-23.8638,0,-9.40023	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:206:206,0:206:7399:0:0:0,-62.0122,-665.951	0/1:159:80,77:80:2860:77:2738:-199.004,0,-210.016	0/1:71:37,34:37:1324:34:1220:-88.7337,0,-98.089	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:121:67,54:67:2392:54:1918:-136.471,0,-179.113	0/1:110:44,66:44:1584:66:2348:-178.334,0,-109.738	0/1:117:54,63:54:1940:63:2244:-167.003,0,-139.656	0/1:88:42,46:42:1504:46:1648:-122.118,0,-109.164	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:137:58,79:58:2055:79:2820:-212.798,0,-143.98	0/1:69:33,36:33:1173:36:1277:-94.4614,0,-85.1045	0/1:144:67,77:67:2370:77:2755:-204.843,0,-170.207	0/0:142:142,0:142:5060:0:0:0,-42.7463,-455.545	0/0:137:137,0:137:4877:0:0:0,-41.2411,-439.084	0/0:89:89,0:89:3178:0:0:0,-26.7917,-286.243	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:97:55,42:55:1980:42:1504:-106.455,0,-149.275	0/1:35:13,22:13:468:22:792:-61.0696,0,-31.9236	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:115:65,50:65:2332:50:1775:-125.413,0,-175.521	0/1:41:18,23:18:648:23:816:-61.4195,0,-46.3097	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:117:116,1:116:4163:1:36:0,-31.6222,-371.253	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:202:96,106:96:3448:106:3782:-279.77,0,-249.724	0/0:171:171,0:171:6115:0:0:0,-51.4761,-550.451	0/0:49:48,1:48:1716:1:36:0,-11.1522,-151.127	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/0:137:136,1:136:4880:1:36:0,-37.6428,-435.753	0/1:61:27,34:27:968:34:1209:-90.7522,0,-69.0745	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.684	0/1:91:40,51:40:1436:51:1819:-136.597,0,-102.144	0/0:116:116,0:116:4130:0:0:0,-34.9195,-371.885	0/0:188:187,1:187:6710:1:36:0,-52.9954,-600.374	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:90:88,1:88:3115:1:36:0,-23.5532,-276.891	0/1:15:13,2:13:459:2:72:-2.32127,0,-37.1286	0/0:125:124,1:124:4452:1:36:0,-34.0305,-397.251	0/1:151:83,68:83:2976:68:2415:-172.15,0,-222.617	0/0:188:188,0:188:6748:0:0:0,-56.5936,-607.392	0/0:126:126,0:126:4488:0:0:0,-37.9298,-404.089	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:106:43,63:43:1544:63:2251:-170.943,0,-107.344	0/0:139:137,2:137:4916:2:72:0,-35.0064,-435.753	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:88:44,44:44:1558:44:1566:-114.74,0,-114.02	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/1:45:23,22:23:828:22:774:-56.4344,0,-61.2978	0/1:110:55,55:55:1964:55:1943:-142.032,0,-143.922	0/1:94:36,58:36:1288:58:2076:-158.814,0,-87.9268	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.174	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888
chr08	4245420	.	T	C	344421	PASS	AB=0.469987;ABP=45.8934;AC=152;AF=0.808511;AN=188;AO=12504;CIGAR=1X;DP=15440;DPB=15440;DPRA=0;EPP=26912.4;EPPR=6337.22;GTI=0;LEN=1;MEANALT=1.07447;MQM=58.1409;MQMR=59.7552;NS=94;NUMALT=1;ODDS=7.79746;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=444174;QR=104313;RO=2929;RPL=5789;RPP=151.921;RPPR=3.04663;RPR=6715;RUN=1;SAF=5817;SAP=134.455;SAR=6687;SRF=1464;SRP=3.01104;SRR=1465;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:74:0,74:0:0:74:2640:-237.748,-22.2762,0	1/1:221:0,221:0:0:221:7914:-711.954,-66.5276,0	0/1:197:103,94:103:3692:94:3346:-240.848,0,-273.157	1/1:378:0,378:0:0:378:13422:-1206.6,-113.789,0	0/1:26:11,15:11:392:15:532:-39.9427,0,-27.7917	0/1:52:23,29:23:820:29:1036:-77.8857,0,-58.447	1/1:264:0,264:0:0:264:9396:-844.231,-79.4719,0	1/1:261:0,260:0:0:260:9233:-830.457,-78.2678,0	1/1:190:0,190:0:0:190:6784:-610.299,-57.1957,0	1/1:207:0,207:0:0:207:7338:-660.075,-62.3132,0	1/1:125:1,124:1:32:124:4393:-391.985,-34.4294,0	1/1:175:0,175:0:0:175:6222:-559.777,-52.6803,0	1/1:146:0,145:0:0:145:5153:-463.003,-43.6494,0	1/1:182:3,179:3:104:179:6407:-566.574,-45.0863,0	1/1:149:0,149:0:0:149:5248:-472.112,-44.8535,0	1/1:117:0,117:0:0:117:4143:-371.77,-35.2205,0	1/1:110:0,110:0:0:110:3920:-352.379,-33.1133,0	1/1:108:0,108:0:0:108:3801:-342.053,-32.5112,0	1/1:79:0,79:0:0:79:2791:-251.319,-23.7814,0	1/1:211:1,210:1:36:210:7439:-665.298,-59.9217,0	1/1:305:1,304:1:36:304:10829:-970.342,-88.2176,0	0/1:84:56,28:56:2000:28:985:-63.5161,0,-154.986	1/1:284:1,283:1:36:283:10094:-903.138,-81.8942,0	0/1:177:86,91:86:3076:91:3246:-239.006,0,-223.737	1/1:69:0,69:0:0:69:2468:-222.241,-20.7711,0	0/1:551:287,264:287:10194:264:9392:-678.644,0,-750.944	0/1:408:204,203:204:7226:203:7210:-525.662,0,-526.574	1/1:84:0,84:0:0:84:2979:-268.209,-25.2865,0	1/1:460:0,460:0:0:460:16232:-1459.57,-138.474,0	1/1:242:6,236:6:212:236:8376:-733.579,-53.4245,0	0/1:299:168,130:168:5987:130:4619:-325.614,0,-448.857	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	1/1:24:2,22:2:72:22:773:-62.8807,-0.387998,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:14:0,14:0:0:14:504:-45.6198,-4.21442,0	1/1:27:2,25:2:72:25:868:-71.4429,-1.29109,0	1/1:358:0,358:0:0:358:12710:-1142.61,-107.769,0	0/1:177:81,96:81:2895:96:3436:-256.061,0,-207.234	0/1:104:59,45:59:2120:45:1586:-111.705,0,-159.748	1/1:3:0,3:0:0:3:108:-10.0172,-0.90309,0	0/1:225:124,101:124:4443:101:3591:-255.315,0,-332.275	0/1:63:38,25:38:1360:25:896:-61.9662,0,-103.734	0/1:197:98,99:98:3485:99:3508:-256.262,0,-254.399	0/1:148:69,79:69:2463:79:2832:-210.323,0,-177.365	1/1:115:0,115:0:0:115:4028:-362.314,-34.6185,0	0/1:211:97,114:97:3431:114:4046:-300.758,0,-245.485	0/1:134:74,60:74:2635:60:2140:-152.368,0,-197.037	0/1:230:122,108:122:4334:108:3813:-273.684,0,-320.946	1/1:157:0,157:0:0:157:5591:-502.427,-47.2617,0	1/1:258:0,258:0:0:258:9167:-823.965,-77.6657,0	1/1:229:0,229:0:0:229:8133:-731.709,-68.9359,0	0/1:17:5,12:5:180:12:432:-34.0891,0,-11.4346	0/1:139:65,74:65:2311:74:2627:-194.799,0,-166.407	0/1:129:75,54:75:2647:54:1940:-135.685,0,-199.632	0/1:31:14,17:14:500:17:608:-45.7192,0,-36.0042	0/1:202:84,118:84:2984:118:4168:-313.516,0,-207.933	0/1:104:65,39:65:2307:39:1387:-93.7232,0,-175.558	1/1:11:0,11:0:0:11:388:-35.2555,-3.31133,0	0/1:20:10,10:10:352:10:356:-26.3579,0,-25.9976	1/1:242:0,242:0:0:242:8639:-776.951,-72.8493,0	1/1:188:0,188:0:0:188:6643:-596.569,-56.5936,0	1/1:15:0,15:0:0:15:536:-48.561,-4.51545,0	0/1:213:133,80:133:4690:80:2848:-191.948,0,-358.11	1/1:255:2,253:2:68:253:8999:-801.52,-70.3049,0	1/1:132:0,132:0:0:132:4714:-424.214,-39.736,0	1/1:116:1,115:1:36:115:4045:-360.261,-31.3212,0	1/1:324:2,322:2:72:322:11461:-1023.88,-90.697,0	0/1:224:152,72:152:5430:72:2554:-162.197,0,-421.387	1/1:75:1,74:1:36:74:2639:-233.532,-18.9807,0	1/1:152:0,152:0:0:152:5427:-488.419,-45.7566,0	1/1:111:1,110:1:36:110:3860:-343.972,-29.8161,0	1/1:27:0,27:0:0:27:968:-87.2387,-8.12781,0	1/1:190:0,190:0:0:190:6721:-604.504,-57.1957,0	0/1:173:83,90:83:2972:90:3139:-230.55,0,-215.599	1/1:574:1,573:1:36:573:20388:-1829.39,-169.195,0	1/1:202:0,202:0:0:202:7188:-645.936,-60.8081,0	1/1:23:0,23:0:0:23:820:-73.9591,-6.92369,0	1/1:163:1,162:1:36:162:5751:-514.073,-45.4696,0	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	1/1:128:0,128:0:0:128:4542:-408.429,-38.5318,0	0/1:168:99,68:99:3547:68:2396:-165.004,0,-268.79	1/1:295:0,294:0:0:294:10470:-940.509,-88.5028,0	1/1:132:0,132:0:0:132:4679:-420.677,-39.736,0	1/1:134:0,134:0:0:134:4753:-427.526,-40.338,0	0/1:159:82,77:82:2928:77:2722:-197.329,0,-215.887	1/1:299:0,299:0:0:299:10652:-957.823,-90.008,0	1/1:72:0,72:0:0:72:2561:-230.646,-21.6742,0	0/1:138:61,76:61:2163:76:2676:-198.842,0,-153.485	1/1:117:0,117:0:0:117:4151:-373.293,-35.2205,0	0/1:105:53,52:53:1884:52:1868:-136.686,0,-138.226	0/1:181:96,85:96:3440:85:3035:-218.765,0,-255.311	0/1:140:98,42:98:3497:42:1469:-90.2127,0,-272.786	1/1:155:1,154:1:36:154:5494:-490.342,-43.0614,0	1/1:201:1,200:1:36:200:7098:-634.398,-56.9088,0
chr08	4248693	.	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4,3:0:0:4,3:144,95:-19.5731,-7.91276,-6.70864,-11.9931,0,-11.09	1/1:58:0,58,0:0:0:58,0:2064,0:-181.507,-17.4597,0,-181.507,-17.4597,-181.507	1/1:75:0,75,0:0:0:75,0:2634,0:-234.138,-22.5773,0,-234.138,-22.5773,-234.138	1/1:6:0,6,0:0:0:6,0:216,0:-19.5168,-1.80618,0,-19.5168,-1.80618,-19.5168	1/2:88:0,52,36:0:0:52,36:1863,1213:-247.516,-97.8698,-82.2163,-149.989,0,-139.152	1/1:155:0,152,3:0:0:152,3:5442,92:-479.606,-45.7566,0,-472.393,-38.2422,-471.49	1/1:31:0,31,0:0:0:31,0:1099,0:-97.2111,-9.33193,0,-97.2111,-9.33193,-97.2111	1/1:46:0,46,0:0:0:46,0:1617,0:-142.304,-13.8474,0,-142.304,-13.8474,-142.304	1/1:155:0,154,1:0:0:154,1:5455,36:-481.513,-46.3586,0,-478.62,-43.1111,-478.319	1/2:38:0,20,18:0:0:20,18:712,605:-104.789,-48.6801,-42.6595,-56.4471,0,-51.0286	1/1:11:0,11,0:0:0:11,0:387,0:-32.9805,-3.31133,0,-32.9805,-3.31133,-32.9805	1/1:50:0,50,0:0:0:50,0:1768,0:-154.828,-15.0515,0,-154.828,-15.0515,-154.828	1/1:66:0,66,0:0:0:66,0:2342,0:-207.862,-19.868,0,-207.862,-19.868,-207.862	1/1:13:0,13,0:0:0:13,0:464,0:-41.4515,-3.91339,0,-41.4515,-3.91339,-41.4515	1/1:67:0,67,0:0:0:67,0:2379,0:-208.644,-20.169,0,-208.644,-20.169,-208.644	1/2:50:0,27,23:0:0:27,23:963,757:-136.842,-60.1991,-52.0713,-76.9774,0,-70.0537	1/1:101:0,101,0:0:0:101,0:3588,0:-312.856,-30.404,0,-312.856,-30.404,-312.856	1/1:128:0,128,0:0:0:128,0:4545,0:-401.785,-38.5318,0,-401.785,-38.5318,-401.785	1/1:53:0,52,1:0:0:52,1:1868,36:-163.398,-15.6536,0,-160.516,-12.4185,-160.215	1/1:62:0,62,0:0:0:62,0:2207,0:-192.289,-18.6639,0,-192.289,-18.6639,-192.289	1/2:8:0,4,4:0:0:4,4:144,128:-22.0817,-10.5376,-9.3335,-11.8795,0,-10.6754	1/1:83:0,83,0:0:0:83,0:2956,0:-258.128,-24.9855,0,-258.128,-24.9855,-258.128	1/2:55:0,29,26:0:0:29,26:1036,895:-154.462,-71.931,-63.2011,-82.8757,0,-75.049	1/1:176:0,176,0:0:0:176,0:6226,0:-546.505,-52.9813,0,-546.505,-52.9813,-546.505	1/1:80:0,80,0:0:0:80,0:2857,0:-252.765,-24.0824,0,-252.765,-24.0824,-252.765	1/1:29:0,29,0:0:0:29,0:1039,0:-91.6472,-8.72987,0,-91.6472,-8.72987,-91.6472	1/2:36:0,22,14:0:0:22,14:776,467:-99.4209,-37.7215,-31.0988,-62.0354,0,-57.821	1/1:91:0,91,0:0:0:91,0:3218,0:-284.296,-27.3937,0,-284.296,-27.3937,-284.296	1/1:31:0,31,0:0:0:31,0:1091,0:-95.854,-9.33193,0,-95.854,-9.33193,-95.854	1/2:52:0,37,15:0:0:37,15:1324,509:-144.302,-40.524,-29.3859,-104.113,0,-99.5973	1/1:40:0,40,0:0:0:40,0:1423,0:-124.266,-12.0412,0,-124.266,-12.0412,-124.266	1/2:23:0,11,12:0:0:11,12:396,394:-62.9311,-31.3558,-28.0445,-31.9125,0,-28.3001	1/2:43:0,21,22:0:0:21,22:743,723:-116.381,-57.158,-50.8363,-59.5568,0,-52.9341	1/2:33:0,15,18:0:0:15,18:523,583:-88.4402,-46.859,-42.3436,-41.9132,0,-36.4946	1/1:98:0,98,0:0:0:98,0:3461,0:-304.479,-29.5009,0,-304.479,-29.5009,-304.479	1/1:63:0,63,0:0:0:63,0:2251,0:-198.331,-18.9649,0,-198.331,-18.9649,-198.331
chr08	4288446	.	GTCTC	GTCTG,TTCTT	143822	PASS	AB=0.452124,0.542471;ABP=54.5756,43.5892;AC=149,39;AF=0.792553,0.207447;AN=188;AO=5177,1425;CIGAR=4M1X,1X3M1X;DP=6644;DPB=6643.2;DPRA=18.2198,1.06057;EPP=11158,3080.01;EPPR=9.52472;GTI=0;LEN=1,5;MEANALT=1.78022,2.24324;MQM=59.9766,59.8267;MQMR=60;NS=94;NUMALT=2;ODDS=2.66335;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=184872,49869;QR=97;RO=3;RPL=10,2;RPP=11158,3080.01;RPPR=9.52472;RPR=5167,1423;RUN=1,1;SAF=5177,1425;SAP=11244.7,3097.36;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,50,0:0:0:50,0:1772,0:-159.499,-15.0515,0,-159.499,-15.0515,-159.499	1/1:72:0,71,0:0:0:71,0:2527,0:-227.445,-21.3731,0,-227.445,-21.3731,-227.445	1/2:145:0,60,83:0:0:60,83:2128,2920:-411.059,-237.688,-219.626,-173.365,0,-148.379	1/1:163:0,161,0:0:0:161,0:5744,0:-516.785,-48.4658,0,-516.785,-48.4658,-516.785	1/2:31:0,12,18:0:0:12,18:428,641:-87.2088,-52.3171,-48.7047,-34.9607,0,-29.5422	1/2:19:0,7,12:0:0:7,12:252,420:-55.087,-34.5214,-32.4142,-20.9217,0,-17.3094	1/1:39:0,39,0:0:0:39,0:1395,0:-125.849,-11.7402,0,-125.849,-11.7402,-125.849	1/1:56:0,56,0:0:0:56,0:1992,0:-179.551,-16.8577,0,-179.551,-16.8577,-179.551	1/1:75:0,73,0:0:0:73,0:2586,0:-232.735,-21.9752,0,-232.735,-21.9752,-232.735	1/1:72:0,72,0:0:0:72,0:2575,0:-231.999,-21.6742,0,-231.999,-21.6742,-231.999	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/1:76:0,76,0:0:0:76,0:2691,0:-242.408,-22.8783,0,-242.408,-22.8783,-242.408	1/1:44:0,44,0:0:0:44,0:1569,0:-141.5,-13.2453,0,-141.5,-13.2453,-141.5	1/1:27:0,27,0:0:0:27,0:959,0:-86.6254,-8.12781,0,-86.6254,-8.12781,-86.6254	1/1:43:0,43,0:0:0:43,0:1536,0:-138.533,-12.9443,0,-138.533,-12.9443,-138.533	1/1:60:0,60,0:0:0:60,0:2152,0:-193.947,-18.0618,0,-193.947,-18.0618,-193.947	1/1:13:0,13,0:0:0:13,0:455,0:-41.282,-3.91339,0,-41.282,-3.91339,-41.282	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:22:0,22,0:0:0:22,0:783,0:-70.7929,-6.62266,0,-70.7929,-6.62266,-70.7929	1/1:114:0,113,0:0:0:113,0:4040,0:-363.531,-34.0164,0,-363.531,-34.0164,-363.531	1/1:115:0,115,0:0:0:115,0:4097,0:-368.915,-34.6185,0,-368.915,-34.6185,-368.915	1/2:71:0,23,48:0:0:23,48:828,1682:-203.842,-136.278,-129.354,-67.9204,0,-53.471	1/1:78:0,78,0:0:0:78,0:2788,0:-251.161,-23.4803,0,-251.161,-23.4803,-251.161	1/2:41:0,26,15:0:0:26,15:932,527:-119.264,-43.2453,-35.4185,-76.3721,0,-71.8566	1/1:49:0,49,0:0:0:49,0:1756,0:-158.324,-14.7505,0,-158.324,-14.7505,-158.324	1/2:195:0,81,114:0:0:81,114:2881,3986:-559.4,-324.611,-300.228,-235.142,0,-200.825	1/2:214:0,125,89:0:0:125,89:4477,3114:-618.812,-253.696,-216.068,-365.469,0,-338.677	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:260:0,260,0:0:0:260,0:9279,0:-835.076,-78.2678,0,-835.076,-78.2678,-835.076	1/1:107:0,99,8:0:0:99,8:3545,288:-318.897,-29.802,0,-295.397,-5.9428,-292.989	1/2:72:0,27,44:0:0:27,44:956,1551:-204.209,-126.334,-118.207,-77.926,0,-64.6807	2/2:2:0,0,2:0:0:0,2:0,66:-6.26795,-6.26795,-6.26795,-0.60206,-0.60206,0	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	2/2:5:0,0,5:0:0:0,5:0,174:-16.0013,-16.0013,-16.0013,-1.50515,-1.50515,0	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:142:0,140,0:0:0:140,0:4998,0:-449.681,-42.1442,0,-449.681,-42.1442,-449.681	1/2:118:0,63,55:0:0:63,55:2260,1935:-342.212,-157.869,-138.904,-184.698,0,-168.141	1/2:41:0,25,16:0:0:25,16:900,547:-118.182,-44.7356,-37.2099,-73.7949,0,-68.9784	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:97:0,41,56:0:0:41,56:1467,1936:-277.27,-157.64,-145.297,-119.983,0,-103.125	1/2:24:0,14,10:0:0:14,10:500,349:-69.5048,-28.7352,-24.5208,-41.1218,0,-38.1115	1/2:113:0,56,56:0:0:56,56:2012,1976:-325.034,-160.895,-144.037,-164.136,0,-147.278	1/2:34:0,14,19:0:0:14,19:496,669:-94.931,-54.5231,-50.3087,-40.4656,0,-34.746	1/1:46:0,46,0:0:0:46,0:1627,0:-146.718,-13.8474,0,-146.718,-13.8474,-146.718	1/2:82:0,37,45:0:0:37,45:1324,1549:-234.077,-126.105,-114.967,-108.324,0,-94.7776	1/2:66:0,23,43:0:0:23,43:828,1480:-188.054,-120.487,-113.564,-67.9204,0,-54.9761	1/2:143:0,65,78:0:0:65,78:2325,2694:-408.756,-219.166,-199.599,-189.942,0,-166.462	1/1:75:0,75,0:0:0:75,0:2692,0:-242.524,-22.5773,0,-242.524,-22.5773,-242.524	1/1:87:0,87,0:0:0:87,0:3112,0:-280.307,-26.1896,0,-280.307,-26.1896,-280.307	1/1:107:0,107,0:0:0:107,0:3836,0:-345.436,-32.2102,0,-345.436,-32.2102,-345.436	2/2:5:0,0,5:0:0:0,5:0,179:-16.4604,-16.4604,-16.4604,-1.50515,-1.50515,0	1/2:127:0,54,71:0:0:54,71:1915,2500:-359.596,-203.577,-187.321,-156.07,0,-134.697	1/2:77:0,41,35:0:0:41,35:1472,1211:-218.401,-98.404,-86.0618,-120.085,0,-109.549	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/2:122:0,51,71:0:0:51,71:1812,2499:-351.447,-203.791,-188.439,-148.009,0,-126.636	1/2:20:0,9,11:0:0:9,11:311,380:-56.4881,-31.219,-28.5098,-25.6145,0,-22.3031	1/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chr08	4288630	.	T	C	34007.2	PASS	AB=0.52341;ABP=21.717;AC=36;AF=0.193548;AN=186;AO=2087;CIGAR=1X;DP=9436;DPB=9436;DPRA=1.42712;EPP=4534.87;EPPR=15956.8;GTI=3;LEN=1;MEANALT=1.03774;MQM=59.9339;MQMR=59.9888;NS=93;NUMALT=1;ODDS=2.04071;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73196;QR=261424;RO=7347;RPL=2087;RPP=4534.87;RPPR=15956.8;RPR=0;RUN=1;SAF=2087;SAP=4534.87;SAR=0;SRF=7347;SRP=15956.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/0:90:89,1:89:3172:1:36:0,-23.4944,-282.107	0/1:394:191,203:191:6783:203:7084:-519.024,0,-491.941	0/0:283:280,2:280:9973:2:63:0,-79.2522,-891.511	0/1:83:40,43:40:1436:43:1518:-111.926,0,-104.552	0/1:28:9,19:9:324:19:662:-51.4736,0,-21.077	0/0:123:123,0:123:4383:0:0:0,-37.0267,-394.645	0/0:133:133,0:133:4740:0:0:0,-40.037,-426.758	0/0:104:104,0:104:3687:0:0:0,-31.3071,-332.033	0/0:86:85,1:85:3035:1:36:0,-22.2903,-269.772	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:97:96,1:96:3415:1:36:0,-25.6016,-303.967	0/0:55:55,0:55:1956:0:0:0,-16.5566,-176.316	0/0:35:35,0:35:1227:0:0:0,-10.536,-110.733	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.877	0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.821	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/0:242:241,1:241:8614:1:36:0,-69.251,-771.528	0/0:190:190,0:190:6751:0:0:0,-57.1957,-607.664	0/1:190:45,145:45:1604:145:5067:-398.982,0,-87.4545	0/0:146:145,1:145:5162:1:36:0,-40.3521,-461.124	0/1:52:24,28:24:856:28:1000:-74.6618,0,-61.7075	0/0:127:127,0:127:4508:0:0:0,-38.2308,-405.89	0/1:255:131,124:131:4678:124:4390:-318.51,0,-344.418	0/1:328:151,177:151:5386:177:6220:-460.845,0,-386.134	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:319:319,0:319:11405:0:0:0,-96.0286,-1026.33	0/0:140:137,3:137:4856:3:104:0,-32.4414,-427.491	0/1:119:66,53:66:2360:53:1872:-132.934,0,-176.836	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:159:159,0:159:5654:0:0:0,-47.8638,-508.981	0/1:138:64,74:64:2255:74:2612:-193.781,0,-161.671	0/1:67:31,36:31:1091:36:1229:-90.7372,0,-78.3297	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:171:95,76:95:3362:76:2688:-190.66,0,-251.319	0/1:27:16,11:16:546:11:392:-27.4922,0,-41.3315	0/1:253:142,111:142:5008:111:3889:-274.027,0,-374.71	0/1:44:27,17:27:942:17:595:-40.6314,0,-71.847	0/0:59:59,0:59:2071:0:0:0,-17.7608,-186.658	0/1:62:16,46:16:568:46:1631:-128.414,0,-32.788	0/1:108:49,59:49:1737:59:2068:-153.876,0,-124.101	0/1:209:112,97:112:4016:97:3416:-244.738,0,-298.713	0/0:120:120,0:120:4290:0:0:0,-36.1236,-386.277	0/0:147:144,3:144:5120:3:104:0,-34.5486,-451.241	0/0:235:235,0:235:8331:0:0:0,-70.742,-749.803	0/1:14:3,11:3:93:11:396:-31.7683,0,-4.46231	0/1:173:88,85:88:3131:85:2937:-212.483,0,-229.939	0/1:69:33,36:33:1175:36:1280:-94.7322,0,-85.2783	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:154:84,70:84:2928:70:2486:-177.634,0,-217.396	0/1:58:27,31:27:964:31:1083:-80.3183,0,-69.6171	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/0:83:82,1:82:2905:1:36:0,-21.3872,-258.085	0/0:82:78,4:78:2769:4:144:0,-11.3708,-236.137	.:.:.:.:.:.:.:.	0/1:198:99,99:99:3529:99:3509:-256.416,0,-258.215	0/0:194:193,1:193:6895:1:36:0,-54.8015,-617.021	0/0:78:77,1:77:2739:1:36:0,-19.8821,-243.155	0/0:86:84,2:84:3004:2:72:0,-19.0519,-263.755	0/0:146:145,1:145:5156:1:36:0,-40.3521,-460.584	0/1:228:77,150:77:2747:150:5249:-403.828,0,-178.779	0/0:26:25,1:25:900:1:36:0,-4.2285,-77.7227	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:126:125,1:125:4437:1:36:0,-34.3315,-395.905	0/1:94:55,39:55:1959:39:1374:-95.6603,0,-148.288	0/0:182:182,0:182:6505:0:0:0,-54.7875,-585.464	0/0:207:207,0:207:7400:0:0:0,-62.3132,-666.045	0/0:112:111,1:111:3944:1:36:0,-30.1171,-351.554	0/0:75:74,1:74:2628:1:36:0,-18.979,-233.167	0/1:23:14,9:14:496:9:294:-19.8519,0,-38.0506	0/0:103:103,0:103:3678:0:0:0,-31.0061,-331.223	0/1:111:44,67:44:1569:67:2343:-177.676,0,-108.085	0/0:189:189,0:189:6737:0:0:0,-56.8947,-606.406	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.462	0/1:43:19,24:19:672:24:821:-61.2576,0,-47.8625	0/0:110:110,0:110:3935:0:0:0,-33.1133,-354.342	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/1:60:29,31:29:1022:31:1087:-80.0759,0,-74.2291	0/0:53:53,0:53:1872:0:0:0,-15.9546,-168.756	0/1:28:15,13:15:531:13:425:-30.1331,0,-39.6931	0/1:71:40,31:40:1403:31:1080:-76.1354,0,-105.191	0/1:58:24,34:24:864:34:1152:-86.5175,0,-60.6228	0/0:134:134,0:134:4777:0:0:0,-40.338,-430.087	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.803
chr08	4294593	.	A	T	87184.8	PASS	AB=0.462045;ABP=27.7361;AC=149;AF=0.801075;AN=186;AO=4058;CIGAR=1X;DP=5131;DPB=5131;DPRA=27.875;EPP=8814.85;EPPR=2326.49;GTI=1;LEN=1;MEANALT=1.02174;MQM=54.1503;MQMR=59.6112;NS=93;NUMALT=1;ODDS=1.3744;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145244;QR=38296;RO=1070;RPL=0;RPP=8814.85;RPPR=2326.49;RPR=4058;RUN=1;SAF=4058;SAP=8814.85;SAR=0;SRF=1070;SRP=2326.49;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:860:-77.1272,-7.22472,0	1/1:82:0,82:0:0:82:2948:-264.237,-24.6845,0	0/1:62:29,33:29:1040:33:1172:-86.7185,0,-75.2221	1/1:120:0,120:0:0:120:4296:-386.171,-36.1236,0	0/1:11:3,8:3:108:8:284:-22.554,0,-6.76384	0/1:8:3,5:3:108:5:180:-14.0965,0,-7.66693	1/1:33:1,32:1:36:32:1152:-100.294,-6.33572,0	1/1:80:0,80:0:0:80:2872:-257.393,-24.0824,0	1/1:55:0,55:0:0:55:1965:-175.998,-16.5567,0	1/1:73:0,73:0:0:73:2624:-235.945,-21.9752,0	1/1:40:0,40:0:0:40:1436:-129.139,-12.0412,0	1/1:60:0,60:0:0:60:2156:-193.662,-18.0618,0	1/1:58:0,58:0:0:58:2088:-187.556,-17.4597,0	1/1:52:0,52:0:0:52:1872:-168.205,-15.6536,0	1/1:37:0,37:0:0:37:1332:-120.006,-11.1381,0	1/1:29:0,29:0:0:29:1010:-91.0778,-8.72987,0	1/1:31:0,31:0:0:31:1116:-100.199,-9.33193,0	1/1:30:0,30:0:0:30:1080:-97.1042,-9.0309,0	1/1:15:0,15:0:0:15:540:-48.7876,-4.51545,0	1/1:91:0,91:0:0:91:3256:-292.464,-27.3937,0	1/1:69:0,69:0:0:69:2455:-220.327,-20.7711,0	0/1:32:25,7:25:900:7:252:-13.345,0,-71.6871	1/1:70:0,70:0:0:70:2497:-224.322,-21.0721,0	0/1:73:28,45:28:1008:45:1612:-123.088,0,-69.0566	1/1:25:0,25:0:0:25:896:-80.1498,-7.52575,0	0/1:174:98,76:98:3504:76:2732:-193.577,0,-262.861	0/1:155:78,77:78:2781:77:2745:-200.185,0,-203.854	1/1:23:0,23:0:0:23:824:-73.9332,-6.92369,0	1/1:132:0,132:0:0:132:4728:-425.142,-39.736,0	1/1:103:2,100:2:72:100:3589:-315.089,-24.2278,0	0/1:77:45,32:45:1612:32:1148:-80.3095,0,-122.171	0/1:5:4,1:4:144:1:36:-1.97555,0,-11.8085	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:6:3,3:3:108:3:108:-8.23789,0,-8.26899	1/1:8:0,8:0:0:8:279:-25.3263,-2.40824,0	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	1/1:108:0,108:0:0:108:3853:-345.693,-32.5112,0	0/1:85:35,50:35:1256:50:1776:-133.313,0,-87.7485	0/1:29:21,8:21:752:8:288:-17.4715,0,-59.2439	1/1:7:0,7:0:0:7:252:-22.9891,-2.10721,0	0/1:69:41,28:41:1472:28:1008:-70.1161,0,-112	0/1:19:9,10:9:324:10:360:-26.9783,0,-23.6745	0/1:43:21,22:21:756:22:773:-56.3208,0,-55.4137	0/1:47:21,26:21:756:26:927:-69.47,0,-54.2188	1/1:39:0,39:0:0:39:1396:-125.848,-11.7402,0	0/1:36:21,15:21:752:15:540:-38.0821,0,-57.1683	0/1:42:18,24:18:644:24:864:-65.228,0,-45.6473	0/1:72:34,38:34:1220:38:1353:-100.214,0,-88.4303	1/1:37:0,37:0:0:37:1324:-119.3,-11.1381,0	1/1:84:0,84:0:0:84:3016:-271.262,-25.2865,0	1/1:43:0,43:0:0:43:1544:-139.112,-12.9443,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83188	0/1:68:21,47:21:756:47:1692:-131.702,0,-47.8972	0/1:23:6,17:6:216:17:612:-48.4728,0,-12.8668	0/1:10:5,5:5:180:5:180:-13.5002,0,-13.5418	0/1:53:35,16:35:1244:16:557:-34.6783,0,-96.3846	0/1:35:20,15:20:716:15:540:-38.3428,0,-54.2317	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/1:9:6,3:6:212:3:108:-7.35763,0,-16.7155	1/1:44:0,44:0:0:44:1565:-140.621,-13.2453,0	1/1:59:3,56:3:108:56:1996:-169.526,-7.6856,0	.:.:.:.:.:.:.:.	0/1:322:208,114:208:7411:114:4083:-270.3,0,-569.195	1/1:127:0,127:0:0:127:4545:-408.402,-38.2308,0	1/1:47:0,47:0:0:47:1680:-150.202,-14.1484,0	1/1:49:0,49:0:0:49:1748:-157.34,-14.7505,0	1/1:54:1,53:1:36:53:1904:-167.89,-12.6573,0	0/1:89:55,34:55:1972:34:1212:-82.4885,0,-150.959	1/1:28:0,28:0:0:28:1008:-90.7004,-8.42884,0	1/1:31:0,31:0:0:31:1112:-100.104,-9.33193,0	1/1:51:0,51:0:0:51:1828:-164.752,-15.3525,0	1/1:24:0,24:0:0:24:864:-77.0941,-7.22472,0	1/1:35:0,35:0:0:35:1252:-112.34,-10.5361,0	0/1:71:41,30:41:1464:30:1072:-74.3886,0,-110.669	1/1:100:0,100:0:0:100:3571:-318.829,-30.103,0	1/1:160:0,160:0:0:160:5719:-513.853,-48.1648,0	1/1:18:0,18:0:0:18:640:-57.7726,-5.41854,0	1/1:107:0,107:0:0:107:3827:-343.54,-32.2102,0	0/1:5:2,3:2:72:3:108:-8.54469,0,-5.33157	1/1:50:0,50:0:0:50:1776:-159.052,-15.0515,0	0/1:50:26,24:26:932:24:852:-61.6117,0,-69.1441	1/1:78:0,78:0:0:78:2804:-252.31,-23.4803,0	1/1:45:0,45:0:0:45:1616:-145.422,-13.5464,0	1/1:27:0,27:0:0:27:972:-87.1291,-8.12781,0	0/1:38:20,18:20:716:18:640:-46.0689,0,-53.3286	1/1:90:0,90:0:0:90:3232:-290.759,-27.0927,0	1/1:22:0,22:0:0:22:788:-70.7823,-6.62266,0	0/1:35:18,17:18:644:17:612:-44.1659,0,-47.7545	1/1:27:0,27:0:0:27:954:-85.314,-8.12781,0	0/1:13:6,7:6:216:7:248:-18.5153,0,-15.8724	0/1:67:27,40:27:972:40:1432:-108.512,0,-67.6243	0/1:43:28,15:28:1004:15:536:-35.5944,0,-77.7246	1/1:161:0,161:0:0:161:5765:-516.669,-48.4658,0	1/1:55:0,55:0:0:55:1964:-176.538,-16.5567,0
chr08	4294602	.	G	A	88260.5	PASS	AB=0.468592;ABP=19.9245;AC=149;AF=0.801075;AN=186;AO=4102;CIGAR=1X;DP=5161;DPB=5161;DPRA=28.038;EPP=8910.39;EPPR=2302.6;GTI=1;LEN=1;MEANALT=1;MQM=54.1277;MQMR=59.6128;NS=93;NUMALT=1;ODDS=1.9975;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146923;QR=37722;RO=1059;RPL=0;RPP=8910.39;RPPR=2302.6;RPR=4102;RUN=1;SAF=4102;SAP=8910.39;SAR=0;SRF=1059;SRP=2302.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:864:-77.483,-7.22472,0	1/1:83:0,83:0:0:83:2969:-266.201,-24.9855,0	0/1:62:29,33:29:1036:33:1188:-88.14,0,-74.8616	1/1:120:0,120:0:0:120:4281:-384.704,-36.1236,0	0/1:11:3,8:3:108:8:288:-22.9152,0,-6.76384	0/1:9:4,5:4:140:5:180:-13.7955,0,-10.2353	1/1:34:1,33:1:36:33:1176:-102.453,-6.63675,0	1/1:81:0,81:0:0:81:2891:-258.978,-24.3834,0	1/1:58:0,58:0:0:58:2050:-183.475,-17.4597,0	1/1:74:0,74:0:0:74:2656:-238.835,-22.2762,0	1/1:40:0,40:0:0:40:1432:-128.835,-12.0412,0	1/1:64:0,64:0:0:64:2296:-205.803,-19.2659,0	1/1:59:0,59:0:0:59:2124:-190.786,-17.7608,0	1/1:52:0,52:0:0:52:1853:-166.501,-15.6536,0	1/1:37:0,37:0:0:37:1327:-119.602,-11.1381,0	1/1:29:0,29:0:0:29:1040:-93.6783,-8.72987,0	1/1:32:0,32:0:0:32:1144:-102.719,-9.63296,0	1/1:31:0,31:0:0:31:1116:-100.335,-9.33193,0	1/1:16:0,16:0:0:16:572:-51.6131,-4.81648,0	1/1:91:0,91:0:0:91:3245:-291.524,-27.3937,0	1/1:68:0,68:0:0:68:2436:-218.593,-20.47,0	0/1:32:25,7:25:885:7:244:-12.6166,0,-70.3327	1/1:69:0,69:0:0:69:2472:-222.346,-20.7711,0	0/1:73:28,45:28:1008:45:1620:-123.803,0,-69.0566	1/1:25:0,25:0:0:25:900:-80.5077,-7.52575,0	0/1:174:97,77:97:3446:77:2753:-195.452,0,-257.805	0/1:156:77,79:77:2745:79:2832:-207.698,0,-200.318	1/1:23:0,23:0:0:23:828:-74.2912,-6.92369,0	1/1:134:0,134:0:0:134:4816:-432.858,-40.338,0	1/1:107:2,105:2:72:105:3780:-332.18,-25.3735,0	0/1:78:45,33:45:1596:33:1180:-82.8857,0,-120.404	0/1:6:5,1:5:165:1:36:-1.67452,0,-13.3674	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:5:3,2:3:108:2:72:-5.30851,0,-8.57002	1/1:7:0,7:0:0:7:248:-22.4519,-2.10721,0	1/1:3:0,3:0:0:3:104:-9.68253,-0.90309,0	1/1:110:0,110:0:0:110:3956:-354.926,-33.1133,0	0/1:84:34,50:34:1216:50:1792:-135.154,0,-84.4508	0/1:27:18,9:18:625:9:324:-21.2982,0,-48.3455	1/1:7:0,7:0:0:7:252:-22.9891,-2.10721,0	0/1:70:41,29:41:1472:29:1036:-72.3335,0,-111.699	0/1:19:9,10:9:324:10:360:-26.9783,0,-23.6745	0/1:43:21,22:21:752:22:772:-56.2882,0,-55.0527	0/1:47:20,27:20:716:27:968:-73.1541,0,-50.6193	1/1:39:0,39:0:0:39:1404:-126.41,-11.7402,0	0/1:37:21,16:21:741:16:572:-40.6598,0,-55.8735	0/1:43:18,25:18:644:25:900:-68.1092,0,-45.3463	0/1:73:35,38:35:1256:38:1368:-101.263,0,-91.3677	1/1:37:0,37:0:0:37:1332:-120.018,-11.1381,0	1/1:87:0,87:0:0:87:3098:-278.656,-26.1896,0	1/1:43:0,43:0:0:43:1542:-138.392,-12.9443,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83188	0/1:68:21,47:21:756:47:1677:-130.364,0,-47.8972	0/1:24:6,18:6:216:18:644:-51.048,0,-12.5658	0/1:10:5,5:5:180:5:180:-13.5002,0,-13.5418	0/1:54:35,19:35:1218:19:669:-44.195,0,-93.5013	0/1:35:20,15:20:716:15:540:-38.3428,0,-54.2317	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/1:9:6,3:6:216:3:108:-7.35763,0,-17.0812	1/1:45:0,45:0:0:45:1612:-144.688,-13.5464,0	1/1:60:3,57:3:108:57:2048:-174.15,-7.98663,0	.:.:.:.:.:.:.:.	0/1:323:209,114:209:7440:114:4062:-268.129,0,-571.503	1/1:127:0,127:0:0:127:4556:-409.446,-38.2308,0	1/1:46:0,46:0:0:46:1648:-147.632,-13.8474,0	1/1:49:0,49:0:0:49:1760:-158.357,-14.7505,0	1/1:54:1,53:1:36:53:1904:-167.89,-12.6573,0	0/1:90:55,35:55:1961:35:1260:-86.4588,0,-149.666	1/1:28:0,28:0:0:28:1008:-90.7004,-8.42884,0	1/1:30:0,30:0:0:30:1076:-96.8738,-9.0309,0	1/1:50:0,50:0:0:50:1796:-161.874,-15.0515,0	1/1:24:0,24:0:0:24:864:-77.0941,-7.22472,0	1/1:37:0,37:0:0:37:1330:-118.923,-11.1381,0	0/1:67:38,29:38:1364:29:1025:-71.4385,0,-102.877	1/1:100:0,100:0:0:100:3568:-318.655,-30.103,0	1/1:162:0,162:0:0:162:5785:-519.809,-48.7669,0	1/1:19:0,19:0:0:19:680:-61.3594,-5.71957,0	1/1:109:0,109:0:0:109:3908:-350.603,-32.8123,0	0/1:5:2,3:2:72:3:108:-8.54469,0,-5.33157	1/1:51:0,51:0:0:51:1816:-162.747,-15.3525,0	0/1:50:26,24:26:927:24:864:-62.5246,0,-68.6877	1/1:78:0,78:0:0:78:2804:-252.31,-23.4803,0	1/1:46:0,46:0:0:46:1648:-148.368,-13.8474,0	1/1:27:0,27:0:0:27:972:-87.1291,-8.12781,0	0/1:39:20,19:20:705:19:684:-49.7239,0,-52.0326	1/1:89:0,89:0:0:89:3185:-286.533,-26.7917,0	1/1:22:0,22:0:0:22:792:-71.2002,-6.62266,0	0/1:34:17,17:17:608:17:612:-44.4669,0,-44.817	1/1:26:0,26:0:0:26:936:-83.7913,-7.82678,0	0/1:11:4,7:4:144:7:252:-19.4793,0,-10.0023	0/1:65:26,39:26:928:39:1400:-106.238,0,-64.2667	0/1:41:26,15:26:928:15:532:-35.8361,0,-71.4905	1/1:162:0,162:0:0:162:5801:-519.855,-48.7669,0	1/1:57:1,56:1:36:56:2012:-177.249,-13.5604,0
chr08	4294633	.	T	C	87834.2	PASS	AB=0.465587;ABP=23.336;AC=149;AF=0.801075;AN=186;AO=4086;CIGAR=1X;DP=5155;DPB=5155;DPRA=28.0054;EPP=8840.94;EPPR=2317.8;GTI=1;LEN=1;MEANALT=1.02174;MQM=54.1603;MQMR=59.5882;NS=93;NUMALT=1;ODDS=1.75348;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146023;QR=38180;RO=1066;RPL=4082;RPP=8840.94;RPPR=2300.46;RPR=4;RUN=1;SAF=4086;SAP=8875.65;SAR=0;SRF=1064;SRP=2300.46;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:892:-80.0085,-7.52575,0	1/1:83:0,83:0:0:83:2984:-267.543,-24.9855,0	0/1:61:28,33:28:1008:33:1184:-88.0856,0,-72.6451	1/1:119:0,119:0:0:119:4265:-383.344,-35.8226,0	0/1:11:3,8:3:108:8:284:-22.5561,0,-6.76384	0/1:9:4,5:4:135:5:180:-13.7955,0,-9.77324	1/1:34:1,33:1:36:33:1176:-102.458,-6.63675,0	1/1:81:2,79:2:72:79:2836:-247.094,-17.5467,0	1/1:56:0,56:0:0:56:1996:-179.062,-16.8577,0	1/1:74:0,74:0:0:74:2647:-238.09,-22.2762,0	1/1:40:0,40:0:0:40:1424:-128.103,-12.0412,0	1/1:62:0,62:0:0:62:2212:-198.703,-18.6639,0	1/1:59:0,59:0:0:59:2116:-190.077,-17.7608,0	1/1:51:0,51:0:0:51:1820:-163.545,-15.3525,0	1/1:36:0,36:0:0:36:1292:-116.423,-10.8371,0	1/1:28:0,28:0:0:28:993:-89.5543,-8.42884,0	1/1:33:0,33:0:0:33:1184:-106.304,-9.93399,0	1/1:32:0,32:0:0:32:1152:-103.565,-9.63296,0	1/1:16:0,16:0:0:16:568:-51.2844,-4.81648,0	1/1:90:0,90:0:0:90:3223:-289.927,-27.0927,0	1/1:69:0,69:0:0:69:2456:-220.535,-20.7711,0	0/1:32:25,7:25:900:7:252:-13.345,0,-71.6871	1/1:70:0,70:0:0:70:2484:-223.359,-21.0721,0	0/1:74:30,44:30:1076:44:1584:-120.268,0,-74.872	1/1:25:0,25:0:0:25:891:-79.6995,-7.52575,0	0/1:170:94,74:94:3380:74:2656:-188.204,0,-253.152	0/1:157:78,79:78:2804:79:2810:-205.428,0,-205.317	1/1:23:0,23:0:0:23:820:-73.5751,-6.92369,0	1/1:133:0,133:0:0:133:4772:-428.899,-40.037,0	1/1:103:2,101:2:72:101:3590:-315.266,-24.1694,0	0/1:80:46,34:46:1643:34:1205:-84.5277,0,-123.987	0/1:5:4,1:4:144:1:36:-1.97555,0,-11.8085	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:5:3,2:3:108:2:72:-5.30851,0,-8.57002	1/1:8:0,8:0:0:8:288:-26.039,-2.40824,0	1/1:3:0,3:0:0:3:104:-9.68253,-0.90309,0	1/1:110:0,110:0:0:110:3903:-350.263,-33.1133,0	0/1:84:34,50:34:1224:50:1787:-134.446,0,-85.1713	0/1:31:22,9:22:784:9:320:-19.7355,0,-61.4447	1/1:7:0,7:0:0:7:252:-22.9891,-2.10721,0	0/1:70:41,29:41:1476:29:1040:-72.6933,0,-112.059	0/1:19:9,10:9:324:10:345:-25.6193,0,-23.6745	0/1:42:21,21:21:756:21:756:-54.9249,0,-55.7147	0/1:47:20,27:20:716:27:956:-72.0781,0,-50.6193	1/1:40:0,40:0:0:40:1417:-127.666,-12.0412,0	0/1:37:21,16:21:756:16:572:-40.6576,0,-57.2282	0/1:43:18,25:18:648:25:892:-67.3977,0,-45.7076	0/1:72:34,38:34:1220:38:1364:-101.206,0,-88.4326	1/1:37:0,37:0:0:37:1323:-119.209,-11.1381,0	1/1:87:0,87:0:0:87:3119:-280.505,-26.1896,0	1/1:44:0,44:0:0:44:1580:-142.03,-13.2453,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45577	0/1:67:21,46:21:756:46:1656:-128.773,0,-48.1982	0/1:24:6,18:6:216:18:640:-50.6873,0,-12.5658	0/1:10:5,5:5:180:5:180:-13.5002,0,-13.5418	0/1:52:33,19:33:1169:19:675:-45.3397,0,-89.8525	0/1:34:19,15:19:680:15:540:-38.6438,0,-51.2941	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/1:8:6,2:6:216:2:72:-4.42102,0,-17.3823	1/1:45:1,44:1:36:44:1580:-138.052,-9.94808,0	1/1:60:3,57:3:108:57:2032:-172.738,-7.98663,0	.:.:.:.:.:.:.:.	0/1:322:208,114:208:7449:114:4100:-271.78,0,-572.605	1/1:126:0,126:0:0:126:4511:-405.354,-37.9298,0	1/1:46:0,46:0:0:46:1639:-147.549,-13.8474,0	1/1:49:0,49:0:0:49:1731:-155.826,-14.7505,0	1/1:55:1,54:1:36:54:1944:-171.486,-12.9584,0	0/1:89:55,34:55:1968:34:1220:-83.1663,0,-150.599	1/1:28:0,28:0:0:28:1004:-90.3448,-8.42884,0	1/1:31:0,31:0:0:31:1103:-99.303,-9.33193,0	1/1:51:0,51:0:0:51:1824:-164.392,-15.3525,0	1/1:24:0,24:0:0:24:846:-76.1167,-7.22472,0	1/1:35:0,35:0:0:35:1256:-112.386,-10.5361,0	0/1:71:41,30:41:1457:30:1055:-72.8731,0,-110.037	1/1:100:0,100:0:0:100:3573:-319.719,-30.103,0	1/1:163:0,163:0:0:163:5839:-524.604,-49.0679,0	1/1:19:0,19:0:0:19:676:-61.0032,-5.71957,0	1/1:109:0,109:0:0:109:3879:-348.023,-32.8123,0	0/1:5:2,3:2:72:3:108:-8.54469,0,-5.33157	1/1:49:0,49:0:0:49:1764:-157.996,-14.7505,0	0/1:50:26,24:26:936:24:856:-61.8129,0,-69.4998	1/1:77:0,77:0:0:77:2743:-246.89,-23.1793,0	1/1:47:0,47:0:0:47:1675:-150.767,-14.1484,0	1/1:27:0,27:0:0:27:949:-85.0701,-8.12781,0	0/1:39:20,19:20:705:19:661:-47.6502,0,-52.0326	1/1:90:0,90:0:0:90:3227:-290.309,-27.0927,0	1/1:22:0,22:0:0:22:792:-71.056,-6.62266,0	0/1:34:17,17:17:597:17:608:-44.1785,0,-43.815	1/1:27:0,27:0:0:27:961:-86.4015,-8.12781,0	0/1:13:6,7:6:216:7:252:-18.8772,0,-15.8724	0/1:67:27,40:27:972:40:1440:-109.227,0,-67.6243	0/1:42:27,15:27:953:15:540:-36.2557,0,-73.4331	1/1:159:0,158:0:0:158:5651:-505.983,-47.5627,0	1/1:57:0,57:0:0:57:2039:-183.277,-17.1587,0
chr08	4294678	.	G	A	15400.2	PASS	AB=0.526375;ABP=13.6632;AC=36;AF=0.191489;AN=188;AO=934;CIGAR=1X;DP=4446;DPB=4446;DPRA=1.11932;EPP=2013.83;EPPR=7614.02;GTI=0;LEN=1;MEANALT=1.02381;MQM=59.9647;MQMR=59.9989;NS=94;NUMALT=1;ODDS=0.826983;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32932;QR=123842;RO=3509;RPL=2;RPP=2013.83;RPPR=7614.02;RPR=932;RUN=1;SAF=0;SAP=2031.17;SAR=934;SRF=0;SRP=7622.71;SRR=3509;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:487:0:0:0,-4.21442,-44.1592	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:32:18,14:18:627:14:500:-35.7032,0,-47.1214	0/0:73:73,0:73:2576:0:0:0,-21.9752,-232.089	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/0:69:68,1:68:2424:1:36:0,-17.1728,-214.818	0/0:41:41,0:41:1438:0:0:0,-12.3422,-129.714	0/0:54:54,0:54:1908:0:0:0,-16.2556,-171.995	0/0:61:61,0:61:2155:0:0:0,-18.3628,-194.216	0/0:23:22,1:22:780:1:36:0,-3.32541,-66.9248	0/0:77:77,0:77:2689:0:0:0,-23.1793,-242.251	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/0:36:36,0:36:1237:0:0:0,-10.8371,-111.627	0/0:23:23,0:23:806:0:0:0,-6.92369,-72.8582	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:20:20,0:20:681:0:0:0,-6.0206,-61.6064	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:54:54,0:54:1904:0:0:0,-16.2556,-171.635	0/0:122:122,0:122:4292:0:0:0,-36.7257,-386.46	0/1:43:17,26:17:599:26:936:-71.6152,0,-41.2938	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/1:46:26,20:26:917:20:692:-48.7512,0,-68.9972	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.973	0/1:111:67,44:67:2395:44:1516:-103.311,0,-182.392	0/1:123:76,47:76:2637:47:1655:-112.208,0,-200.548	0/0:18:18,0:18:609:0:0:0,-5.41854,-55.1246	0/0:114:114,0:114:4038:0:0:0,-34.3174,-363.611	0/0:75:74,1:74:2633:1:36:0,-18.979,-233.618	0/1:84:30,54:30:1076:54:1872:-143.466,0,-71.8663	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:11:10,0:10:360:0:0:0,-3.0103,-32.3845	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:131:131,0:131:4587:0:0:0,-39.4349,-412.998	0/1:58:26,32:26:915:32:1125:-84.0961,0,-65.2058	0/1:22:11,11:11:379:11:392:-28.9974,0,-27.8179	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:66:34,32:34:1203:32:1135:-82.5901,0,-88.7071	0/1:22:8,14:8:273:14:487:-37.5365,0,-18.2775	0/1:91:44,47:44:1544:47:1667:-122.923,0,-111.855	0/1:31:17,14:17:586:14:500:-36.0042,0,-43.7308	0/0:45:45,0:45:1582:0:0:0,-13.5463,-142.666	0/1:37:18,19:18:636:19:676:-50.0299,0,-46.4299	0/1:58:24,34:24:860:34:1212:-91.9266,0,-60.2621	0/1:65:39,26:39:1354:26:907:-62.3768,0,-102.587	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/0:67:67,0:67:2381:0:0:0,-20.169,-214.546	0/0:25:25,0:25:878:0:0:0,-7.52575,-79.3359	0/1:11:4,7:4:135:7:252:-19.7176,0,-9.17118	0/1:53:21,32:21:747:32:1135:-86.5035,0,-51.5997	0/1:42:16,26:16:552:26:932:-71.5556,0,-37.3596	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:83:38,45:38:1329:45:1608:-120.025,0,-94.9222	0/1:20:13,7:13:451:7:248:-16.6436,0,-34.8992	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/1:8:1,7:1:36:7:244:-19.8912,0,-1.19003	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:52:52,0:52:1837:0:0:0,-15.6536,-165.609	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:219:97,120:97:3413:120:4226:-314.75,0,-241.704	0/0:69:68,1:68:2423:1:36:0,-17.1728,-214.727	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:76:75,1:75:2687:1:27:0,-20.1785,-239.374	0/1:82:16,66:16:572:66:2341:-186.265,0,-27.129	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:15:15,0:15:516:0:0:0,-4.51545,-46.7634	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:63:63,0:63:2196:0:0:0,-18.9649,-197.902	0/1:66:31,35:31:1084:35:1235:-91.5855,0,-77.9981	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.835	0/0:122:122,0:122:4316:0:0:0,-36.7257,-388.619	0/0:36:35,1:35:1243:1:36:0,-7.2388,-108.576	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.647	0/1:12:6,6:6:207:6:216:-16.1782,0,-15.3545	0/0:46:46,0:46:1604:0:0:0,-13.8474,-144.647	0/1:53:24,29:24:856:29:989:-73.3591,0,-61.4065	0/0:82:82,0:82:2915:0:0:0,-24.6845,-262.586	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.9615	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/0:74:74,0:74:2610:0:0:0,-22.2762,-235.146	0/0:14:14,0:14:486:0:0:0,-4.21442,-44.068	0/1:37:17,20:17:612:20:694:-51.6423,0,-44.2753	0/0:47:47,0:47:1645:0:0:0,-14.1484,-148.336	0/1:12:6,6:6:216:6:207:-15.3545,0,-16.1782	0/1:48:26,22:26:921:22:766:-54.809,0,-68.7558	0/1:52:16,36:16:550:36:1284:-100.21,0,-34.1698	0/0:164:164,0:164:5769:0:0:0,-49.3689,-519.331	0/0:49:49,0:49:1711:0:0:0,-14.7505,-154.272
chr08	4325834	.	A	T	96198.3	PASS	AB=0.578662;ABP=92.1742;AC=150;AF=0.806452;AN=186;AO=4414;CIGAR=1X;DP=5135;DPB=5135;DPRA=55.8043;EPP=9587.89;EPPR=1568.64;GTI=5;LEN=1;MEANALT=1;MQM=59.9887;MQMR=60;NS=93;NUMALT=1;ODDS=0.512634;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157776;QR=25800;RO=721;RPL=4414;RPP=9587.89;RPPR=1516.96;RPR=0;RUN=1;SAF=0;SAP=9587.89;SAR=4414;SRF=6;SRP=1516.96;SRR=715;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:91:0,91:0:0:91:3272:-294.699,-27.3937,0	0/1:46:17,29:17:612:29:1044:-80.4274,0,-41.5661	1/1:105:0,105:0:0:105:3772:-339.678,-31.6082,0	0/1:22:4,18:4:144:18:648:-52.0292,0,-6.69096	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	1/1:85:1,84:1:36:84:2997:-266.362,-21.9893,0	1/1:92:0,92:0:0:92:3288:-296.14,-27.6948,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:73:1,72:1:36:72:2568:-227.772,-18.3769,0	1/1:55:1,54:1:36:54:1925:-169.927,-12.9584,0	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	1/1:59:1,58:1:36:58:2076:-183.512,-14.1625,0	1/1:45:1,44:1:36:44:1572:-138.173,-9.94808,0	1/1:46:2,44:2:72:44:1569:-134.663,-7.01066,0	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	1/1:97:0,97:0:0:97:3476:-313.051,-29.1999,0	0/1:20:5,15:5:180:15:536:-42.5542,0,-10.5315	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	0/1:57:19,38:19:676:38:1364:-105.902,0,-44.0093	1/1:32:0,32:0:0:32:1129:-101.916,-9.63296,0	0/1:140:69,71:69:2472:71:2544:-187.067,0,-180.59	0/1:70:26,44:26:928:44:1580:-121.419,0,-62.7662	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:122:0,122:0:0:122:4316:-388.614,-36.7257,0	1/1:82:1,81:1:36:81:2881:-255.928,-21.0862,0	0/1:63:25,38:25:896:38:1364:-104.096,0,-61.9955	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:141:3,138:3:108:138:4959:-436.382,-32.3701,0	0/1:120:36,84:36:1277:84:2982:-232.451,0,-79.1075	0/1:49:28,21:28:1008:21:744:-52.5339,0,-76.2859	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:67:24,43:24:852:43:1544:-119.084,0,-56.8314	0/1:32:14,18:14:495:18:648:-49.0189,0,-35.2501	0/1:29:6,23:6:216:23:801:-63.6768,0,-11.0606	0/1:46:23,23:23:824:23:824:-60.6344,0,-60.6359	1/1:42:1,41:1:36:41:1476:-129.538,-9.04499,0	0/1:41:18,23:18:644:23:824:-62.1411,0,-45.9484	0/1:39:9,30:9:320:30:1072:-85.0523,0,-17.4022	0/1:70:25,45:25:900:45:1600:-123.218,0,-60.2489	1/1:76:0,76:0:0:76:2713:-244.412,-22.8783,0	1/1:91:0,91:0:0:91:3218:-289.842,-27.3937,0	1/1:106:0,106:0:0:106:3788:-341.119,-31.9092,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:43:10,33:10:356:33:1184:-93.924,0,-19.437	0/1:26:16,10:16:576:10:360:-24.9175,0,-44.3482	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/1:61:23,38:23:824:38:1368:-105.058,0,-56.1205	0/1:12:2,10:2:72:10:356:-28.7689,0,-3.22436	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:92:1,91:1:36:91:3268:-290.741,-24.0965,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:106:57,49:57:2028:49:1752:-126.055,0,-150.884	1/1:125:0,125:0:0:125:4465:-401.933,-37.6288,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:82:0,82:0:0:82:2925:-263.484,-24.6845,0	0/1:75:36,39:36:1292:39:1388:-102.642,0,-94.0065	1/1:37:1,36:1:36:36:1296:-113.346,-7.53984,0	1/1:67:1,66:1:36:66:2345:-207.71,-16.5707,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:13:0,13:0:0:13:449:-40.7375,-3.91339,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	0/1:53:29,24:29:1040:24:864:-62.128,0,-77.9598	1/1:145:0,145:0:0:145:5157:-464.273,-43.6494,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:76:0,76:0:0:76:2712:-244.324,-22.8783,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:56:0,56:0:0:56:1996:-179.878,-16.8577,0	0/1:45:17,28:17:604:28:1004:-77.1295,0,-41.1443	1/1:107:1,106:1:36:106:3812:-339.678,-28.6119,0	1/1:80:1,79:1:36:79:2840:-252.239,-20.4841,0	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	0/1:58:33,25:33:1184:25:881:-62.1461,0,-89.4086	1/1:109:2,107:2:72:107:3828:-337.88,-25.9755,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:54:29,25:29:1044:25:896:-64.7047,0,-78.0192	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:34:9,25:9:320:25:900:-71.086,0,-18.9073	0/1:82:36,46:36:1288:46:1640:-123.204,0,-91.5391	0/1:53:38,15:38:1364:15:536:-32.6202,0,-107.106	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:58:2,56:2:72:56:2008:-174.157,-10.623,0
chr08	4354750	.	C	T	22377.7	PASS	AB=0.519156;ABP=11.1631;AC=36;AF=0.191489;AN=188;AO=1339;CIGAR=1X;DP=6472;DPB=6472;DPRA=1.04664;EPP=2910.61;EPPR=11144.8;GTI=0;LEN=1;MEANALT=1.04545;MQM=59.9432;MQMR=59.9862;NS=94;NUMALT=1;ODDS=2.2292;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47690;QR=183182;RO=5131;RPL=1339;RPP=2910.61;RPPR=11144.8;RPR=0;RUN=1;SAF=0;SAP=2910.61;SAR=1339;SRF=0;SRP=11144.8;SRR=5131;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1222:0:0:0,-10.536,-110.28	0/0:60:60,0:60:2122:0:0:0,-18.0618,-191.245	0/1:147:82,65:82:2948:65:2302:-163.187,0,-221.301	0/0:142:142,0:142:5042:0:0:0,-42.7463,-453.927	0/1:58:28,30:28:1000:30:1076:-79.6931,0,-72.8556	0/1:18:6,12:6:216:12:432:-33.0196,0,-14.372	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:76:76,0:76:2683:0:0:0,-22.8783,-241.711	0/0:54:53,1:53:1896:1:36:0,-12.6573,-167.32	0/0:70:70,0:70:2490:0:0:0,-21.0721,-224.35	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:102:102,0:102:3656:0:0:0,-30.7051,-328.926	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:42:41,1:41:1457:1:36:0,-9.04498,-127.826	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:35:33,1:33:1184:1:36:0,-6.99657,-103.27	0/0:38:38,0:38:1368:0:0:0,-11.4391,-122.056	0/0:147:147,0:147:5268:0:0:0,-44.2514,-474.256	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/1:56:22,34:22:792:34:1216:-92.8889,0,-54.748	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:31:21,10:21:752:10:360:-23.4124,0,-58.6743	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:148:64,84:64:2292:84:2993:-225.049,0,-161.989	0/1:258:133,125:133:4746:125:4437:-321.833,0,-349.63	0/0:34:33,1:33:1150:1:34:0,-6.83611,-100.403	0/0:167:167,0:167:5940:0:0:0,-50.272,-534.705	0/0:149:148,1:148:5278:1:36:0,-41.2552,-471.556	0/1:84:41,43:41:1461:43:1548:-114.327,0,-106.498	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:171:171,0:171:6121:0:0:0,-51.4761,-550.988	0/1:54:33,21:33:1173:21:752:-51.7506,0,-89.6184	0/1:61:29,32:29:1044:32:1122:-82.921,0,-75.912	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:94:47,47:47:1662:47:1692:-124.27,0,-121.567	0/1:21:10,11:10:360:11:392:-29.2984,0,-26.4227	0/1:100:47,53:47:1688:53:1842:-135.95,0,-122.104	0/1:44:18,26:18:644:26:921:-69.9599,0,-45.0453	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/1:83:50,33:50:1777:33:1169:-80.5298,0,-135.225	0/1:79:44,35:44:1542:35:1242:-88.2995,0,-115.286	0/1:130:51,79:51:1832:79:2803:-213.373,0,-126.027	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/0:86:86,0:86:3061:0:0:0,-25.8886,-275.718	0/1:12:6,6:6:216:6:197:-14.439,0,-16.1782	0/1:109:39,70:39:1404:70:2504:-192.799,0,-93.847	0/1:54:26,28:26:932:28:1000:-74.0598,0,-67.9432	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	0/1:126:66,60:66:2334:60:2152:-156.017,0,-172.387	0/1:34:21,13:21:722:13:468:-32.2246,0,-55.06	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:43:43,0:43:1514:0:0:0,-12.9443,-136.549	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:128:71,57:71:2544:57:2052:-146.419,0,-190.679	0/0:93:93,0:93:3329:0:0:0,-27.9958,-299.826	0/0:136:136,0:136:4850:0:0:0,-40.9401,-436.652	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.007	0/0:76:74,2:74:2581:2:72:0,-16.0416,-225.696	0/1:144:39,105:39:1400:105:3757:-294.98,0,-82.9509	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:60:60,0:60:2145:0:0:0,-18.0618,-193.316	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:157:157,0:157:5633:0:0:0,-47.2617,-507.087	0/1:78:39,38:39:1388:38:1349:-98.1132,0,-101.68	0/0:86:86,0:86:3081:0:0:0,-25.8886,-277.516	0/0:133:133,0:133:4761:0:0:0,-40.037,-428.646	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:69:66,3:66:2357:3:108:0,-10.6959,-202.312	0/1:18:12,6:12:428:6:211:-13.9147,0,-33.4403	0/0:88:88,0:88:3104:0:0:0,-26.4906,-279.583	0/1:83:33,50:33:1188:50:1777:-135.225,0,-82.2431	0/0:135:135,0:135:4799:0:0:0,-40.639,-432.064	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:35:20,15:20:716:15:536:-38.0388,0,-54.2317	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:67:31,36:31:1108:36:1296:-96.7749,0,-79.862	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	0/1:69:37,32:37:1332:32:1125:-80.7844,0,-99.4113	0/1:65:24,41:24:845:41:1457:-111.857,0,-56.8001	0/0:86:85,1:85:3048:1:36:0,-22.2903,-270.951	0/0:90:90,0:90:3225:0:0:0,-27.0927,-290.47
chr08	4413627	.	T	C	14870.5	PASS	AB=0.558743;ABP=46.8907;AC=39;AF=0.209677;AN=186;AO=875;CIGAR=1X;DP=3847;DPB=3847;DPRA=1.16518;EPP=1894.37;EPPR=6426.25;GTI=1;LEN=1;MEANALT=1.02439;MQM=59.936;MQMR=59.9822;NS=93;NUMALT=1;ODDS=0.104977;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31079;QR=105320;RO=2970;RPL=1;RPP=1894.37;RPPR=6426.25;RPR=874;RUN=1;SAF=0;SAP=1903.05;SAR=875;SRF=0;SRP=6452.28;SRR=2970;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:56:56,0:56:1983:0:0:0,-16.8577,-178.744	0/1:43:20,23:20:708:23:824:-61.539,0,-51.1013	0/0:82:82,0:82:2890:0:0:0,-24.6845,-260.249	0/1:12:9,3:9:316:3:108:-6.46281,0,-25.1665	0/1:27:10,17:10:360:17:597:-45.9283,0,-24.6165	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.031	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.692	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:62:61,1:61:2149:1:36:0,-15.0656,-190.078	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.185	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/0:41:41,0:41:1418:0:0:0,-12.3422,-127.911	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:15:15,0:15:519:0:0:0,-4.51545,-47.0367	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	1/1:48:4,44:4:136:44:1575:-129.465,-1.8739,0	0/0:16:16,0:16:560:0:0:0,-4.81648,-50.7287	0/1:54:20,34:20:686:34:1185:-90.6968,0,-45.8001	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:168:52,116:52:1816:116:4155:-323.559,0,-113.146	0/1:61:19,42:19:680:42:1503:-117.201,0,-43.1663	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/0:55:53,2:53:1888:2:68:0,-10.0989,-163.741	0/1:43:20,23:20:716:23:805:-59.8202,0,-51.8234	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:101:101,0:101:3581:0:0:0,-30.404,-322.498	0/1:101:44,57:44:1576:57:2040:-153.468,0,-111.728	0/1:33:20,13:20:708:13:449:-30.7963,0,-54.1116	.:.:.:.:.:.:.:.	0/1:63:25,38:25:891:38:1332:-101.206,0,-61.5439	0/1:17:14,3:14:500:3:108:-4.95766,0,-40.2187	0/1:38:12,26:12:424:26:923:-71.9476,0,-27.0573	0/1:32:15,17:15:536:17:612:-45.7805,0,-38.9419	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:44:15,27:15:540:27:964:-74.0925,0,-35.9511	0/1:43:11,32:11:388:32:1130:-89.0626,0,-22.3131	0/1:61:27,34:27:964:34:1216:-91.3837,0,-68.714	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.526	0/0:88:87,1:87:3065:1:36:0,-22.8924,-272.482	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:46:23,23:23:824:23:828:-60.9967,0,-60.6359	0/1:16:9,7:9:311:7:252:-18.2125,0,-23.5072	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:58:35,23:35:1240:23:811:-55.8484,0,-94.4447	0/1:5:3,2:3:100:2:72:-5.33157,0,-7.82529	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:99:99,0:99:3498:0:0:0,-29.802,-315.031	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:123:80,43:80:2843:43:1513:-99.4342,0,-219.082	0/0:67:67,0:67:2373:0:0:0,-20.169,-213.741	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:42:41,1:41:1452:1:36:0,-9.04498,-127.378	0/1:71:20,51:20:693:51:1829:-143.517,0,-41.3165	0/0:23:23,0:23:802:0:0:0,-6.92369,-72.4974	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.6	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/1:32:15,17:15:536:17:612:-45.7805,0,-38.9419	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:92:92,0:92:3280:0:0:0,-27.6948,-295.418	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:50:50,0:50:1767:0:0:0,-15.0515,-159.313	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:50:20,30:20:711:30:1063:-80.9293,0,-49.2641	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/0:76:75,1:75:2667:1:36:0,-19.28,-236.678	0/0:32:32,0:32:1114:0:0:0,-9.63296,-100.566	0/1:36:17,19:17:604:19:676:-50.3309,0,-43.8535	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.226	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/1:31:18,13:18:627:13:446:-31.1345,0,-47.4225	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/1:26:12,14:12:428:14:496:-37.1475,0,-31.032	0/1:64:34,30:34:1211:30:1053:-75.8124,0,-90.0296	0/1:32:8,24:8:284:24:826:-65.0186,0,-16.2704	0/0:46:46,0:46:1617:0:0:0,-13.8474,-145.817	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868
chr08	4413691	.	TTG	CTA,TTA	229564	PASS	AB=0.534189,0.463715;ABP=41.764,46.661;AC=152,36;AF=0.808511,0.191489;AN=188;AO=8896,1787;CIGAR=1X1M1X,2M1X;DP=10715;DPB=10715;DPRA=0,1.08596;EPP=19303.1,3866.08;EPPR=16.0391;GTI=1;LEN=3,1;MEANALT=1.74468,2.18182;MQM=51.0486,53.5215;MQMR=60;NS=94;NUMALT=2;ODDS=3.75665;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=314320,63956;QR=216;RO=6;RPL=2,2;RPP=19303.1,3866.08;RPPR=16.0391;RPR=8894,1785;RUN=1,1;SAF=8896,1787;SAP=19320.4,3883.43;SAR=0,0;SRF=6;SRP=16.0391;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53,0:0:0:53,0:1864,0:-167.497,-15.9546,0,-167.497,-15.9546,-167.497	1/1:148:0,148,0:0:0:148,0:5178,0:-464.605,-44.5524,0,-464.605,-44.5524,-464.605	1/2:163:0,95,68:0:0:95,68:3391,2444:-474.889,-199.36,-170.763,-275.886,0,-255.416	1/1:308:0,306,1:0:0:306,1:10798,36:-962.92,-92.1152,0,-959.997,-89.1173,-959.696	1/2:42:0,24,18:0:0:24,18:823,648:-119.407,-52.9846,-45.7599,-66.7731,0,-61.3546	1/2:61:0,34,27:0:0:34,27:1220,972:-178.043,-79.5099,-69.2749,-98.891,0,-90.7632	1/1:182:0,182,0:0:0:182,0:6358,0:-565.842,-54.7875,0,-565.842,-54.7875,-565.842	1/1:159:0,158,0:0:0:158,0:5558,0:-497.483,-47.5627,0,-497.483,-47.5627,-497.483	1/1:97:0,97,0:0:0:97,0:3367,0:-302.02,-29.1999,0,-302.02,-29.1999,-302.02	1/1:96:0,95,0:0:0:95,0:3366,0:-300.215,-28.5979,0,-300.215,-28.5979,-300.215	1/1:112:0,111,0:0:0:111,0:3948,0:-351.066,-33.4143,0,-351.066,-33.4143,-351.066	1/1:106:0,106,0:0:0:106,0:3743,0:-336.405,-31.9092,0,-336.405,-31.9092,-336.405	1/1:120:0,119,0:0:0:119,0:4211,0:-377.512,-35.8226,0,-377.512,-35.8226,-377.512	1/1:109:0,108,1:0:0:108,1:3822,36:-341.379,-32.5112,0,-338.47,-29.2455,-338.169	1/1:81:0,80,0:0:0:80,0:2820,0:-251.468,-24.0824,0,-251.468,-24.0824,-251.468	1/1:90:0,88,0:0:0:88,0:3123,0:-277.083,-26.4906,0,-277.083,-26.4906,-277.083	1/1:84:0,83,0:0:0:83,0:2928,0:-262.429,-24.9855,0,-262.429,-24.9855,-262.429	1/1:83:0,83,0:0:0:83,0:2941,0:-264.174,-24.9855,0,-264.174,-24.9855,-264.174	1/1:52:0,52,0:0:0:52,0:1835,0:-165.122,-15.6536,0,-165.122,-15.6536,-165.122	1/1:233:0,233,0:0:0:233,0:8243,0:-736.976,-70.14,0,-736.976,-70.14,-736.976	1/1:149:0,149,0:0:0:149,0:5222,0:-465.669,-44.8535,0,-465.669,-44.8535,-465.669	1/2:87:0,29,58:0:0:29,58:1040,2042:-251.319,-166.518,-157.788,-85.1576,0,-67.6978	1/1:126:0,125,0:0:0:125,0:4427,0:-394.917,-37.6288,0,-394.917,-37.6288,-394.917	1/2:100:0,47,53:0:0:47,53:1649,1904:-287.784,-155.189,-141.04,-132.947,0,-116.993	1/1:80:0,80,0:0:0:80,0:2818,0:-252.504,-24.0824,0,-252.504,-24.0824,-252.504	1/2:321:0,168,152:0:0:168,152:5972,5456:-930.334,-444.01,-393.437,-486.401,0,-440.644	1/2:268:0,150,118:0:0:150,118:5262,4209:-767.624,-342.37,-297.216,-425.606,0,-390.084	1/1:42:0,42,0:0:0:42,0:1493,0:-133.646,-12.6433,0,-133.646,-12.6433,-133.646	1/1:321:0,321,0:0:0:321,0:11351,0:-1019.22,-96.6306,0,-1019.22,-96.6306,-1019.22	1/1:179:0,178,0:0:0:178,0:6285,0:-560.843,-53.5833,0,-560.843,-53.5833,-560.843	1/2:149:0,79,70:0:0:79,70:2770,2493:-425.678,-202.458,-178.676,-223.571,0,-202.499	1/2:11:0,7,4:0:0:7,4:249,144:-32.2783,-12.0657,-9.95846,-20.5697,0,-19.3656	1/1:11:0,11,0:0:0:11,0:392,0:-35.4266,-3.31133,0,-35.4266,-3.31133,-35.4266	1/2:13:0,4,9:0:0:4,9:144,324:-38.4444,-26.7224,-25.5183,-12.081,0,-9.37169	1/1:1:0,1,0:0:0:1,0:36,0:-3.59457,-0.30103,0,-3.59457,-0.30103,-3.59457	1/1:16:0,16,0:0:0:16,0:574,0:-51.8881,-4.81648,0,-51.8881,-4.81648,-51.8881	1/1:218:3,215,0:3:108:215,0:7679,0:-680.276,-55.5494,0,-681.179,-64.7215,-689.991	1/2:143:0,90,52:0:0:90,52:3141,1868:-404.046,-150.96,-123.868,-253.207,0,-237.553	1/2:77:0,37,40:0:0:37,40:1317,1430:-223.035,-116.418,-105.28,-106.972,0,-94.9307	1/1:8:0,8,0:0:0:8,0:283,0:-25.626,-2.40824,0,-25.626,-2.40824,-25.626	1/2:193:0,112,81:0:0:112,81:3968,2891:-554.874,-234.531,-200.816,-320.696,0,-296.312	1/2:58:0,24,34:0:0:24,34:852,1209:-167.075,-98.3558,-91.131,-69.0716,0,-58.8366	1/2:160:2,105,52:2:72:105,52:3690,1868:-442.296,-145.705,-119.972,-291.314,0,-281.535	1/2:118:0,53,65:0:0:53,65:1887,2328:-340.986,-188.848,-172.894,-152.492,0,-132.925	1/1:97:0,97,0:0:0:97,0:3413,0:-305.811,-29.1999,0,-305.811,-29.1999,-305.811	1/2:99:0,52,47:0:0:52,47:1830,1684:-286.394,-137.597,-121.944,-149.152,0,-135.004	1/2:92:0,61,30:0:0:61,30:2162,1080:-263.294,-88.0374,-69.6746,-175.321,0,-166.29	1/2:101:0,56,45:0:0:56,45:1998,1602:-290.801,-130.515,-113.657,-160.639,0,-147.093	1/1:124:0,123,1:0:0:123,1:4382,36:-390.819,-37.0267,0,-387.884,-33.732,-387.583	1/1:187:0,187,0:0:0:187,0:6607,0:-590.745,-56.2926,0,-590.745,-56.2926,-590.745	1/1:202:0,197,5:0:0:197,5:6936,180:-622.859,-59.3029,0,-608.173,-44.2569,-606.667	1/2:9:0,8,1:0:0:8,1:284,32:-25.8686,-2.89215,-0.483905,-23.2994,0,-22.9984	1/2:155:0,85,69:0:0:85,69:3021,2468:-446.381,-200.975,-175.387,-245.551,0,-224.78	1/2:97:0,50,47:0:0:50,47:1792,1688:-283.972,-137.991,-122.939,-146.34,0,-132.191	1/2:18:0,9,9:0:0:9,9:289,324:-49.7907,-26.5533,-23.8441,-23.576,0,-20.8668	1/2:174:0,92,82:0:0:92,82:3259,2932:-499.845,-237.137,-209.442,-263.06,0,-238.376	1/2:55:0,2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chr08	4413723	.	TGGAG	TGGAA,CGGAA	500699	PASS	AB=0.529412,0.465241;ABP=50.7827,69.7337;AC=152,36;AF=0.808511,0.191489;AN=188;AO=15120,2976;CIGAR=4M1X,1X3M1X;DP=18197;DPB=18298.8;DPRA=0,1.07629;EPP=31895.7,6284.2;EPPR=42.4916;GTI=0;LEN=1,5;MEANALT=2.30851,2.875;MQM=54.9287,56.0423;MQMR=60;NS=94;NUMALT=2;ODDS=4.7607;PAIRED=0,0;PAIREDR=0;PAO=254,257;PQA=8211.5,8315.5;PQR=0;PRO=0;QA=538562,102969;QR=765;RO=22;RPL=8623,1786;RPP=652.136,262.198;RPPR=3.40511;RPR=6497,1190;RUN=1,1;SAF=8732,1807;SAP=792.084,300.015;SAR=6388,1169;SRF=13;SRP=4.58955;SRR=9;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:79:0,79,0:0:0:79,0:2799,0:-251.465,-23.7814,0,-251.465,-23.7814,-251.465	1/1:223:0,222,0:0:0:222,0:7856,0:-705.287,-66.8287,0,-705.287,-66.8287,-705.287	1/2:237:0,125,112:0:0:125,112:4443,3866:-675.107,-313.962,-276.333,-361.316,0,-327.601	1/1:490:1,487,1:1:31:487,1:17431,35:-1556.18,-144.127,0,-1553.65,-143.759,-1555.84	1/2:111:0,55,56:0:0:55,56:1952,1945:-316.744,-158.123,-141.566,-158.854,0,-141.996	1/2:105:0,54,51:0:0:54,51:1928,1791:-301.804,-145.598,-129.343,-156.18,0,-140.827	1/1:331:0,331,0:0:0:331,0:11804,0:-1054.59,-99.6409,0,-1054.59,-99.6409,-1054.59	1/1:297:2,295,0:2:72:295,0:10527,0:-936.893,-82.6595,0,-937.495,-88.8039,-943.37	1/1:180:1,177,0:1:35:177,0:6319,0:-564.29,-50.4196,0,-564.591,-53.2823,-567.439	1/1:220:0,217,1:0:0:217,1:7720,36:-691.848,-65.3235,0,-688.911,-62.384,-688.61	1/1:172:0,172,0:0:0:172,0:6101,0:-545.589,-51.7772,0,-545.589,-51.7772,-545.589	1/1:149:0,148,0:0:0:148,0:5291,0:-473.66,-44.5524,0,-473.66,-44.5524,-473.66	1/1:183:1,182,0:1:36:182,0:6446,0:-572.943,-51.4902,0,-573.244,-54.7875,-576.181	1/1:154:0,154,0:0:0:154,0:5499,0:-490.76,-46.3586,0,-490.76,-46.3586,-490.76	1/1:186:0,186,0:0:0:186,0:6650,0:-596.141,-55.9916,0,-596.141,-55.9916,-596.141	1/1:134:0,133,0:0:0:133,0:4725,0:-419.418,-40.037,0,-419.418,-40.037,-419.418	1/1:137:0,137,0:0:0:137,0:4867,0:-434.998,-41.2411,0,-434.998,-41.2411,-434.998	1/1:147:0,146,1:0:0:146,1:5201,36:-465.275,-43.9504,0,-462.338,-40.6531,-462.037	1/1:81:1,80,0:1:35:80,0:2825,0:-249.917,-20.8848,0,-250.218,-24.0824,-253.066	1/1:328:0,327,0:0:0:327,0:11667,0:-1044.87,-98.4368,0,-1044.87,-98.4368,-1044.87	1/1:267:0,267,0:0:0:267,0:9477,0:-847.949,-80.375,0,-847.949,-80.375,-847.949	1/2:169:0,57,111:0:0:57,111:2016,3833:-475.677,-311.501,-294.342,-164.314,0,-130.899	1/1:235:0,233,0:0:0:233,0:8282,0:-741.809,-70.14,0,-741.809,-70.14,-741.809	1/2:162:0,71,90:0:0:71,90:2503,3125:-456.578,-253.697,-232.323,-202.916,0,-175.823	1/1:133:0,133,0:0:0:133,0:4739,0:-425.111,-40.037,0,-425.111,-40.037,-425.111	1/2:596:1,320,273:1:36:320,273:11412,9527:-1700.93,-771.338,-677.946,-926.931,0,-847.687	1/2:429:0,214,212:0:0:214,212:7631,7346:-1215.15,-596.125,-531.704,-619.067,0,-555.249	1/1:76:0,75,1:0:0:75,1:2664,36:-237.359,-22.5773,0,-234.422,-19.28,-234.121	1/1:540:0,539,0:0:0:539,0:19251,0:-1730.07,-162.255,0,-1730.07,-162.255,-1730.07	1/1:243:0,241,0:0:0:241,0:8599,0:-768.446,-72.5482,0,-768.446,-72.5482,-768.446	1/2:272:0,163,109:0:0:163,109:5835,3779:-779.715,-306.55,-257.482,-473.515,0,-440.703	1/2:21:0,15,6:0:0:15,6:536,213:-61.2957,-17.6667,-13.1512,-43.9838,0,-42.1776	1/1:20:0,20,0:0:0:20,0:720,0:-64.8611,-6.0206,0,-64.8611,-6.0206,-64.8611	1/2:13:0,4,9:0:0:4,9:144,305:-36.7416,-25.0133,-23.8091,-12.081,0,-9.37169	1/1:3:0,3,0:0:0:3,0:108,0:-10.0717,-0.90309,0,-10.0717,-0.90309,-10.0717	1/1:23:1,22,0:1:36:22,0:783,0:-67.0908,-3.32542,0,-67.3918,-6.62266,-70.3294	1/1:434:4,429,1:4:140:429,1:15268,36:-1360.11,-117.759,0,-1358.38,-126.202,-1369.46	1/2:264:2,145,115:2:72:145,115:5167,4014:-737.164,-319.147,-281.373,-412.779,0,-384.035	1/2:125:0,65,59:0:0:65,59:2307,2035:-350.881,-163.565,-143.998,-186.035,0,-168.274	1/1:12:0,12,0:0:0:12,0:419,0:-37.8914,-3.61236,0,-37.8914,-3.61236,-37.8914	1/2:264:0,156,107:0:0:156,107:5584,3699:-751.954,-299.667,-252.707,-452.281,0,-420.071	1/2:90:1,38,51:1:36:38,51:1344,1768:-247.747,-139.296,-130.795,-104.932,0,-92.5162	1/2:233:0,150,83:0:0:150,83:5345,2875:-665.287,-233.305,-188.15,-432.331,0,-407.345	1/2:174:0,85,89:0:0:85,89:3023,3064:-492.395,-247.516,-221.929,-245.108,0,-218.316	1/1:187:0,187,0:0:0:187,0:6591,0:-590.801,-56.2926,0,-590.801,-56.2926,-590.801	1/2:214:0,125,87:0:0:125,87:4446,2983:-603.819,-242.071,-204.443,-361.736,0,-335.546	1/2:195:0,101,93:0:0:101,93:3595,3234:-554.672,-262.345,-231.94,-292.281,0,-264.285	1/2:239:0,142,97:0:0:142,97:5048,3368:-682.435,-273.82,-231.074,-408.964,0,-379.764	1/1:203:1,200,1:1:36:200,1:7099,35:-632.152,-57.2567,0,-629.607,-57.3533,-632.244	1/1:343:1,339,0:1:34:339,0:12088,0:-1080.67,-99.3003,0,-1080.97,-102.049,-1083.73	1/1:330:0,329,0:0:0:329,0:11719,0:-1053.05,-99.0389,0,-1053.05,-99.0389,-1053.05	1/2:15:0,10,5:0:0:10,5:352,161:-41.7974,-13.2989,-10.2886,-28.8297,0,-27.3245	1/2:244:0,132,110:0:0:132,110:4707,3828:-693.528,-310.929,-271.193,-382.619,0,-349.506	1/2:124:0,64,60:0:0:64,60:2300,2064:-355.372,-167.911,-148.645,-187.812,0,-169.75	1/2:23:0,12,11:0:0:12,11:428,379:-65.7575,-31.016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chr08	4434727	.	AGTCTTTA	AGTCCTTA,AGTCCTTG	224459	PASS	AB=0.453257,0.538286;ABP=86.038,58.7117;AC=152,36;AF=0.808511,0.191489;AN=188;AO=8227,2379;CIGAR=4M1X3M,4M1X2M1X;DP=10711;DPB=10710.5;DPRA=0,1.42216;EPP=17789.6,5073.84;EPPR=9.52472;GTI=3;LEN=1,8;MEANALT=2.48936,3.125;MQM=59.9955,59.2673;MQMR=60;NS=94;NUMALT=2;ODDS=0.0324488;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=288428,82470;QR=99;RO=3;RPL=8218,2368;RPP=17789.6,5073.84;RPPR=9.52472;RPR=9,11;RUN=1,1;SAF=8227,2379;SAP=17867.7,5168.94;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22,0:0:0:22,0:775,0:-70.0712,-6.62266,0,-70.0712,-6.62266,-70.0712	1/1:154:0,154,0:0:0:154,0:5371,0:-483.528,-46.3586,0,-483.528,-46.3586,-483.528	1/2:188:0,95,93:0:0:95,93:3346,3281:-539.869,-267.462,-238.864,-272.76,0,-244.764	1/1:330:0,317,10:0:0:317,10:11149,335:-1002.99,-95.4265,0,-976.018,-68.4481,-973.008	1/2:87:0,22,65:0:0:22,65:792,2260:-248.682,-184.056,-177.433,-64.983,0,-45.4161	1/2:47:0,16,30:0:0:16,30:561,1044:-130.522,-84.8699,-80.0534,-45.6427,0,-36.6118	1/1:69:0,69,0:0:0:69,0:2421,0:-218.147,-20.7711,0,-218.147,-20.7711,-218.147	1/1:163:0,161,0:0:0:161,0:5658,0:-509.061,-48.4658,0,-509.061,-48.4658,-509.061	1/1:114:0,113,0:0:0:113,0:3956,0:-355.875,-34.0164,0,-355.875,-34.0164,-355.875	1/1:124:0,122,0:0:0:122,0:4304,0:-387.218,-36.7257,0,-387.218,-36.7257,-387.218	1/1:40:0,40,0:0:0:40,0:1390,0:-125.395,-12.0412,0,-125.395,-12.0412,-125.395	1/1:76:0,75,0:0:0:75,0:2572,0:-231.514,-22.5773,0,-231.514,-22.5773,-231.514	1/1:82:0,82,0:0:0:82,0:2860,0:-257.64,-24.6845,0,-257.64,-24.6845,-257.64	1/1:69:0,69,0:0:0:69,0:2390,0:-215.354,-20.7711,0,-215.354,-20.7711,-215.354	1/1:64:0,62,1:0:0:62,1:2131,34:-191.705,-18.6639,0,-188.947,-15.9158,-188.646	1/1:48:0,48,0:0:0:48,0:1628,0:-146.8,-14.4494,0,-146.8,-14.4494,-146.8	1/1:49:0,49,0:0:0:49,0:1720,0:-155.082,-14.7505,0,-155.082,-14.7505,-155.082	1/1:51:0,51,0:0:0:51,0:1767,0:-159.31,-15.3525,0,-159.31,-15.3525,-159.31	1/1:31:0,31,0:0:0:31,0:1074,0:-96.9637,-9.33193,0,-96.9637,-9.33193,-96.9637	1/1:268:0,265,0:0:0:265,0:9302,0:-836.803,-79.773,0,-836.803,-79.773,-836.803	1/1:114:0,112,0:0:0:112,0:3901,0:-351.028,-33.7154,0,-351.028,-33.7154,-351.028	1/2:196:0,60,136:0:0:60,136:2076,4745:-554.943,-386.245,-368.183,-169.045,0,-128.105	1/1:97:1,95,0:1:32:95,0:3378,0:-301.056,-25.9995,0,-301.357,-28.5979,-303.935	1/2:124:0,80,43:0:0:80,43:2835,1494:-352.367,-121.409,-97.3269,-230.948,0,-218.003	1/1:74:0,69,0:0:0:69,0:2417,0:-217.442,-20.7711,0,-217.442,-20.7711,-217.442	1/2:342:0,143,198:0:0:143,198:5063,6828:-966.974,-554.553,-511.506,-412.491,0,-352.887	1/2:238:0,113,123:0:0:113,123:3945,4279:-668.279,-347.399,-313.383,-320.937,0,-283.911	1/1:45:0,45,0:0:0:45,0:1554,0:-140.147,-13.5464,0,-140.147,-13.5464,-140.147	1/1:361:0,358,0:0:0:358,0:12518,0:-1126.19,-107.769,0,-1126.19,-107.769,-1126.19	1/1:181:0,177,2:0:0:177,2:6204,72:-558.139,-53.2823,0,-552.264,-47.375,-551.662	1/2:191:0,103,86:0:0:103,86:3622,2990:-537.973,-243.14,-212.134,-294.885,0,-268.997	1/2:13:0,3,10:0:0:3,10:108,351:-37.7315,-28.9171,-28.0141,-9.17208,0,-6.16178	1/1:13:0,13,0:0:0:13,0:455,0:-41.282,-3.91339,0,-41.282,-3.91339,-41.282	1/2:5:0,3,2:0:0:3,2:99,65:-13.5776,-5.57097,-4.66788,-8.33349,0,-7.73143	1/1:5:0,5,0:0:0:5,0:171,0:-15.7255,-1.50515,0,-15.7255,-1.50515,-15.7255	1/1:18:0,18,0:0:0:18,0:635,0:-57.477,-5.41854,0,-57.477,-5.41854,-57.477	1/1:221:1,219,0:1:35:219,0:7611,0:-681.617,-63.0029,0,-681.918,-65.9256,-684.766	1/2:322:0,132,187:0:0:132,187:4673,6491:-907.981,-527.336,-487.6,-380.685,0,-324.393	1/2:45:0,20,25:0:0:20,25:702,855:-126.855,-69.7196,-63.699,-57.4819,0,-49.9562	1/1:5:0,5,0:0:0:5,0:158,0:-14.5318,-1.50515,0,-14.5318,-1.50515,-14.5318	1/2:231:0,110,118:0:0:110,118:3850,4072:-643.232,-329.991,-296.878,-313.291,0,-277.769	1/2:44:0,27,17:0:0:27,17:959,580:-125.491,-47.34,-39.2122,-78.4976,0,-73.3801	1/2:160:0,62,95:0:0:62,95:2195,3255:-442.646,-263.843,-245.18,-178.829,0,-150.231	1/2:79:0,40,39:0:0:40,39:1410,1361:-225.85,-111.046,-99.0049,-115.155,0,-103.414	1/1:65:0,64,0:0:0:64,0:2234,0:-201.07,-19.2659,0,-201.07,-19.2659,-201.07	1/2:134:0,56,75:0:0:56,75:1955,2578:-367.883,-208.864,-192.006,-159.041,0,-136.463	1/2:128:0,71,57:0:0:71,57:2507,1956:-363.239,-159.076,-137.703,-204.51,0,-187.352	1/2:293:0,134,155:0:0:134,155:4725,5416:-825.247,-440.559,-400.221,-384.73,0,-338.07	1/1:170:0,168,1:0:0:168,1:5937,36:-534.084,-50.573,0,-531.146,-47.6356,-530.845	1/1:204:0,202,2:0:0:202,2:7100,72:-638.712,-60.8081,0,-632.837,-54.5734,-632.235	1/1:239:0,237,0:0:0:237,0:8298,0:-746.593,-71.3441,0,-746.593,-71.3441,-746.593	1/2:17:0,6,11:0:0:6,11:216,376:-48.4793,-30.8484,-29.0422,-17.9843,0,-14.673	1/2:172:0,82,88:0:0:82,88:2906,3090:-488.236,-251.497,-226.812,-236.761,0,-210.271	1/2:32:0,13,18:0:0:13,18:468,607:-87.4125,-49.2163,-45.3029,-38.2327,0,-32.8142	1/2:31:1,17,13:1:32:17,13:608,442:-82.5788,-33.2928,-30.7522,-47.0362,0,-45.6991	1/2:163:0,72,90:0:0:72,90:2521,3171:-463.263,-258.147,-236.473,-205.166,0,-1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chr08	4434832	.	C	T	97648.6	PASS	AB=0.45669;ABP=43.0744;AC=148;AF=0.804348;AN=184;AO=4568;CIGAR=1X;DP=5917;DPB=5917;DPRA=0;EPP=9922.3;EPPR=2921.48;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.8623;MQMR=58.8635;NS=92;NUMALT=1;ODDS=0.909736;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163535;QR=48163;RO=1348;RPL=0;RPP=9922.3;RPPR=2904.16;RPR=4568;RUN=1;SAF=0;SAP=9922.3;SAR=4568;SRF=2;SRP=2912.81;SRR=1346;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:65:0,65:0:0:65:2336:-209.872,-19.567,0	0/1:86:41,45:41:1476:45:1616:-119.813,0,-107.177	1/1:135:0,135:0:0:135:4848:-436.461,-40.6391,0	0/1:58:37,21:37:1324:21:733:-48.8299,0,-102.002	0/1:27:15,12:15:536:12:432:-31.0934,0,-40.4106	1/1:84:0,84:0:0:84:2986:-268.967,-25.2865,0	1/1:89:0,89:0:0:89:3185:-286.837,-26.7917,0	1/1:83:0,83:0:0:83:2961:-266.716,-24.9855,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:49:0,49:0:0:49:1756:-158.295,-14.7505,0	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	1/1:44:0,44:0:0:44:1564:-141.051,-13.2453,0	1/1:88:1,87:1:36:87:3119:-277.334,-22.8924,0	1/1:40:0,40:0:0:40:1432:-129.175,-12.0412,0	1/1:57:0,57:0:0:57:2040:-183.868,-17.1587,0	1/1:47:0,47:0:0:47:1668:-150.407,-14.1484,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:83:0,83:0:0:83:2984:-268.747,-24.9855,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	0/1:89:69,20:69:2484:20:716:-37.976,0,-196.311	1/1:81:0,81:0:0:81:2882:-259.615,-24.3834,0	0/1:138:76,62:76:2719:62:2217:-158.251,0,-203.158	1/1:27:0,27:0:0:27:972:-86.5191,-8.12781,0	0/1:227:115,112:115:4116:112:3999:-291.754,0,-302.242	0/1:97:66,31:66:2352:31:1096:-69.75,0,-182.442	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:122:0,122:0:0:122:4368:-392.668,-36.7257,0	1/1:79:3,76:3:108:76:2732:-236.047,-13.7062,0	0/1:144:56,88:56:2016:88:3124:-238.037,0,-137.631	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:204:1,203:1:36:203:7265:-650.298,-57.8118,0	0/1:155:73,81:73:2615:81:2904:-214.863,0,-188.82	0/1:36:16,20:16:572:20:720:-53.7328,0,-40.6333	.:.:.:.:.:.:.:.	0/1:96:52,44:52:1838:44:1576:-113.204,0,-136.785	0/1:26:16,10:16:568:10:360:-24.9175,0,-43.6251	0/1:90:41,49:41:1472:49:1744:-130.152,0,-105.616	0/1:54:27,27:27:952:27:968:-71.1817,0,-69.562	1/1:64:0,64:0:0:64:2288:-206.182,-19.2659,0	0/1:105:49,56:49:1743:56:2016:-150.105,0,-125.506	0/1:55:38,17:38:1351:17:612:-38.8568,0,-104.977	0/1:106:59,47:59:2116:47:1691:-120.567,0,-158.25	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:43:0,43:0:0:43:1540:-138.888,-12.9443,0	1/1:104:0,104:0:0:104:3724:-335.349,-31.3071,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3798	0/1:92:60,32:60:2148:32:1148:-75.9351,0,-165.688	0/1:47:20,27:20:720:27:972:-73.6495,0,-50.9804	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:77:40,37:40:1413:37:1328:-96.6414,0,-103.989	0/1:49:28,21:28:1000:21:756:-53.6168,0,-75.4968	.:.:.:.:.:.:.:.	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:111:1,110:1:32:110:3929:-350.174,-30.2171,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:116:72,44:72:2550:44:1580:-107.572,0,-194.829	1/1:124:3,121:3:108:121:4325:-379.309,-27.2538,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:48:0,48:0:0:48:1724:-155.168,-14.4494,0	1/1:98:1,97:1:36:97:3467:-308.61,-25.9053,0	0/1:106:73,33:73:2612:33:1188:-75.3194,0,-203.254	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:99:0,99:0:0:99:3541:-318.889,-29.802,0	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	1/1:96:1,95:1:36:95:3408:-301.945,-25.3006,0	1/1:62:0,62:0:0:62:2194:-197.693,-18.6639,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:52:0,52:0:0:52:1849:-165.741,-15.6536,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:50:24,26:24:864:26:932:-69.1367,0,-63.0256	1/1:69:2,67:2:63:67:2408:-210.993,-14.7879,0	1/1:85:0,85:0:0:85:3048:-274.521,-25.5876,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:74:34,40:34:1203:40:1436:-107.261,0,-86.2837	1/1:100:0,100:0:0:100:3575:-321.95,-30.103,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:59:24,35:24:864:35:1260:-95.9438,0,-60.2859	1/1:64:0,64:0:0:64:2285:-205.906,-19.2659,0	0/1:35:16,19:16:572:19:676:-50.6319,0,-41.2324	0/1:54:30,24:30:1068:24:856:-61.1055,0,-80.1051	0/1:46:31,15:31:1112:15:540:-35.0892,0,-86.4731	1/1:43:0,43:0:0:43:1544:-139.218,-12.9443,0	1/1:62:0,62:0:0:62:2228:-200.783,-18.6639,0
chr08	4490629	.	T	A	25894.5	PASS	AB=0.563337;ABP=94.0584;AC=37;AF=0.196809;AN=188;AO=1484;CIGAR=1X;DP=6818;DPB=6818;DPRA=1.0296;EPP=3190.83;EPPR=11403.9;GTI=1;LEN=1;MEANALT=1;MQM=59.9602;MQMR=59.9827;NS=94;NUMALT=1;ODDS=0.0712414;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52872;QR=188025;RO=5330;RPL=1480;RPP=3190.83;RPPR=11403.9;RPR=4;RUN=1;SAF=0;SAP=3225.48;SAR=1484;SRF=0;SRP=11577;SRR=5330;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:46,0:46:1577:0:0:0,-13.8474,-142.218	0/0:56:56,0:56:1988:0:0:0,-16.8577,-179.194	0/1:118:57,61:57:1993:61:2166:-159.684,0,-144.121	0/0:125:125,0:125:4406:0:0:0,-37.6287,-396.716	0/1:31:17,14:17:600:14:491:-35.1884,0,-44.9973	0/1:29:11,18:11:388:18:648:-49.922,0,-26.5275	0/0:51:51,0:51:1789:0:0:0,-15.3525,-161.29	0/0:110:110,0:110:3819:0:0:0,-33.1133,-343.905	0/0:38:38,0:38:1329:0:0:0,-11.4391,-119.908	0/0:60:60,0:60:2113:0:0:0,-18.0618,-190.438	0/0:107:107,0:107:3824:0:0:0,-32.2102,-344.358	0/0:107:107,0:107:3769:0:0:0,-32.2102,-339.413	0/0:99:99,0:99:3501:0:0:0,-29.802,-315.302	0/0:99:99,0:99:3487:0:0:0,-29.802,-314.046	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.576	0/0:97:97,0:97:3452:0:0:0,-29.1999,-310.894	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/0:38:38,0:38:1340:0:0:0,-11.4391,-120.9	0/0:55:53,0:53:1892:0:0:0,-15.9546,-170.199	0/0:82:82,0:82:2885:0:0:0,-24.6845,-259.888	0/0:100:100,0:100:3486:0:0:0,-30.103,-313.956	0/1:50:5,45:5:172:45:1595:-128.788,0,-0.766474	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.29	0/1:42:13,29:13:468:29:1025:-79.9173,0,-29.8164	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/1:185:85,100:85:3016:100:3573:-266.084,0,-215.982	0/1:217:74,143:74:2610:143:5117:-395.348,0,-169.823	0/0:44:44,0:44:1553:0:0:0,-13.2453,-140.06	0/0:184:184,0:184:6489:0:0:0,-55.3895,-584.106	0/0:56:55,1:55:1948:1:36:0,-13.2594,-171.998	0/1:30:14,16:14:492:16:572:-42.7825,0,-35.5814	0/1:17:12,5:12:428:5:171:-10.6079,0,-33.7413	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:180:180,0:180:6388:0:0:0,-54.1854,-575.017	0/1:65:25,40:25:888:40:1436:-109.971,0,-60.6721	0/1:88:52,36:52:1829:36:1275:-88.5616,0,-138.398	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:82:27,55:27:952:55:1947:-150.819,0,-61.3107	0/1:50:23,27:23:812:27:957:-71.3944,0,-58.3494	0/1:129:68,61:68:2378:61:2174:-157.092,0,-175.443	0/1:61:28,33:28:981:33:1184:-88.5055,0,-70.2382	0/0:76:76,0:76:2696:0:0:0,-22.8783,-242.886	0/1:41:16,25:16:553:25:896:-68.6181,0,-37.7518	0/1:96:41,55:41:1449:55:1964:-148.133,0,-101.805	0/1:110:52,58:52:1828:58:2053:-151.927,0,-131.688	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.778	0/0:113:112,1:112:3918:1:36:0,-30.4181,-349.22	0/0:59:59,0:59:2077:0:0:0,-17.7608,-187.199	0/1:12:4,8:4:140:8:284:-22.291,0,-9.33222	0/1:121:70,51:70:2460:51:1827:-128.286,0,-185.232	0/1:55:19,36:19:672:36:1267:-97.7753,0,-44.2502	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:143:63,80:63:2228:80:2864:-214.95,0,-157.738	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	0/0:74:74,0:74:2594:0:0:0,-22.2762,-233.708	0/0:133:133,0:133:4690:0:0:0,-40.037,-422.265	0/0:17:17,0:17:596:0:0:0,-5.11751,-53.9678	0/1:81:31,50:31:1097:50:1763:-134.569,0,-74.6546	0/0:117:117,0:117:4099:0:0:0,-35.2205,-369.099	0/0:49:49,0:49:1713:0:0:0,-14.7505,-154.453	0/0:73:73,0:73:2589:0:0:0,-21.9752,-233.188	0/0:95:95,0:95:3369:0:0:0,-28.5978,-302.8	0/1:149:45,104:45:1600:104:3698:-288.123,0,-99.4367	0/0:89:88,1:88:3113:1:36:0,-23.1934,-276.8	0/0:49:49,0:49:1720:0:0:0,-14.7505,-155.085	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:58:58,0:58:2048:0:0:0,-17.4597,-184.592	0/1:54:15,39:15:532:39:1404:-110.404,0,-31.9575	0/0:72:71,0:71:2472:0:0:0,-21.3731,-222.378	0/0:95:95,0:95:3353:0:0:0,-28.5978,-301.987	0/0:88:88,0:88:3105:0:0:0,-26.4906,-279.679	0/0:75:75,0:75:2629:0:0:0,-22.5772,-236.859	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:71:70,1:70:2453:1:36:0,-17.7749,-217.427	0/1:76:21,55:21:717:55:1972:-154.876,0,-41.9675	0/0:80:80,0:80:2768:0:0:0,-24.0824,-249.36	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.893	0/0:115:115,0:115:4050:0:0:0,-34.6184,-364.69	0/1:39:19,20:19:672:20:701:-51.6716,0,-49.0667	0/0:101:100,0:100:3532:0:0:0,-30.103,-317.734	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:64:37,27:37:1300:27:968:-68.1714,0,-98.0353	0/0:89:89,0:89:3117:0:0:0,-26.7917,-280.76	0/1:98:53,45:53:1872:45:1603:-115.058,0,-139.258	0/1:157:93,64:93:3297:64:2279:-158.11,0,-249.688	0/1:75:32,43:32:1121:43:1535:-115.865,0,-78.6185	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603
chr08	4510777	.	C	G	195771	PASS	AB=0.491287;ABP=5.58357;AC=152;AF=0.808511;AN=188;AO=9033;CIGAR=1X;DP=11040;DPB=11040;DPRA=0;EPP=19600.6;EPPR=4332.93;GTI=0;LEN=1;MEANALT=1.09574;MQM=59.9848;MQMR=59.9815;NS=94;NUMALT=1;ODDS=3.95817;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=322063;QR=71411;RO=1998;RPL=1;RPP=19609.2;RPPR=4332.93;RPR=9032;RUN=1;SAF=1;SAP=19609.2;SAR=9032;SRF=0;SRP=4341.61;SRR=1998;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:142:0,142:0:0:142:5065:-455.995,-42.7463,0	0/1:125:72,53:72:2588:53:1888:-132.57,0,-195.54	1/1:254:1,253:1:36:253:9007:-806.985,-72.8633,0	0/1:44:17,27:17:612:27:972:-74.5526,0,-42.1681	0/1:96:28,68:28:1004:68:2418:-188.976,0,-61.777	1/1:95:0,95:0:0:95:3394:-305.674,-28.5979,0	1/1:131:0,131:0:0:131:4681:-421.45,-39.4349,0	1/1:161:0,161:0:0:161:5745:-517.166,-48.4658,0	1/1:130:0,130:0:0:130:4667:-420.189,-39.1339,0	1/1:85:0,85:0:0:85:3009:-271.039,-25.5876,0	1/1:92:0,92:0:0:92:3261:-293.711,-27.6948,0	1/1:88:0,88:0:0:88:3147:-283.454,-26.4906,0	1/1:210:0,210:0:0:210:7471:-672.432,-63.2163,0	1/1:75:0,75:0:0:75:2687:-242.074,-22.5773,0	1/1:78:0,78:0:0:78:2765:-249.089,-23.4803,0	1/1:126:0,126:0:0:126:4490:-404.269,-37.9298,0	1/1:89:1,88:1:36:88:3130:-279.647,-24.5128,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:159:0,159:0:0:159:5646:-508.262,-47.8638,0	1/1:206:0,206:0:0:206:7370:-663.347,-62.0122,0	0/1:103:60,43:60:2127:43:1531:-107.076,0,-160.689	1/1:54:0,54:0:0:54:1912:-172.355,-16.2556,0	0/1:47:21,26:21:752:26:923:-69.2384,0,-53.8578	1/1:59:0,59:0:0:59:2104:-189.629,-17.7608,0	0/1:325:148,177:148:5296:177:6326:-471.559,0,-378.941	0/1:150:70,80:70:2520:80:2867:-213.112,0,-181.897	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:251:0,251:0:0:251:8994:-809.434,-75.5585,0	1/1:127:2,125:2:72:125:4462:-394.913,-31.3941,0	0/1:176:95,81:95:3404:81:2862:-204.835,0,-253.593	0/1:9:6,3:6:207:3:108:-7.3659,0,-16.2576	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:14:0,14:0:0:14:494:-44.7924,-4.21442,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:234:1,232:1:36:232:8302:-743.589,-66.9015,0	0/1:235:109,125:109:3903:125:4458:-330.1,0,-280.662	0/1:117:65,52:65:2313:52:1851:-131.649,0,-173.209	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:127:57,70:57:2024:70:2472:-184.502,0,-144.199	0/1:77:43,34:43:1535:34:1195:-84.6741,0,-115.263	0/1:108:62,46:62:2184:46:1644:-115.737,0,-164.313	0/1:119:47,72:47:1692:72:2556:-194.466,0,-116.744	1/1:82:0,82:0:0:82:2903:-261.506,-24.6845,0	0/1:116:72,43:72:2592:43:1524:-102.512,0,-198.589	0/1:103:61,42:61:2180:42:1512:-105.369,0,-165.46	0/1:240:114,126:114:4075:126:4483:-331.393,0,-294.689	1/1:138:0,138:0:0:138:4925:-443.401,-41.5421,0	1/1:167:0,167:0:0:167:5983:-538.575,-50.272,0	1/1:155:1,154:1:36:154:5501:-491.617,-43.0614,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:114:49,65:49:1760:65:2318:-174.561,0,-124.366	0/1:70:30,40:30:1076:40:1432:-108.105,0,-76.0808	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	0/1:187:89,98:89:3188:98:3511:-259.907,0,-230.851	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	1/1:95:0,94:0:0:94:3319:-298.589,-28.2968,0	1/1:197:3,194:3:99:194:6893:-611.204,-50.0663,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:261:131,129:131:4664:129:4618:-337.155,0,-341.294	1/1:235:0,235:0:0:235:8408:-756.724,-70.7421,0	1/1:109:0,109:0:0:109:3867:-348.225,-32.8123,0	1/1:97:0,97:0:0:97:3430:-308.911,-29.1999,0	1/1:270:3,267:3:108:267:9539:-848.392,-71.2029,0	0/1:116:64,52:64:2287:52:1864:-133.12,0,-171.172	1/1:54:0,54:0:0:54:1922:-173.256,-16.2556,0	1/1:93:0,93:0:0:93:3328:-299.737,-27.9958,0	1/1:120:0,120:0:0:120:4288:-386.091,-36.1236,0	1/1:17:0,17:0:0:17:585:-52.9723,-5.11751,0	1/1:108:0,108:0:0:108:3824:-344.356,-32.5112,0	0/1:65:30,34:30:1076:34:1216:-90.1209,0,-77.5271	1/1:379:1,378:1:36:378:13445:-1206.24,-110.492,0	1/1:200:0,200:0:0:200:7127:-641.489,-60.206,0	1/1:100:0,99:0:0:99:3548:-319.099,-29.802,0	1/1:130:4,126:4:144:126:4519:-393.562,-25.8203,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:141:0,141:0:0:141:5014:-451.407,-42.4452,0	0/1:117:59,58:59:2109:58:2072:-151.53,0,-154.857	1/1:258:0,258:0:0:258:9160:-824.376,-77.6657,0	1/1:140:0,139:0:0:139:4936:-444.12,-41.8432,0	1/1:100:0,100:0:0:100:3584:-322.767,-30.103,0	0/1:149:83,66:83:2972:66:2360:-167.805,0,-222.859	1/1:242:1,241:1:36:241:8606:-770.937,-69.251,0	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	0/1:81:47,33:47:1661:33:1173:-81.4334,0,-125.333	1/1:94:0,94:0:0:94:3342:-300.995,-28.2968,0	0/1:94:51,43:51:1820:43:1540:-110.596,0,-135.784	0/1:131:70,61:70:2507:61:2172:-156.309,0,-186.447	0/1:120:85,35:85:3028:35:1243:-76.0503,0,-236.625	1/1:140:0,140:0:0:140:5014:-451.406,-42.1442,0	1/1:140:0,140:0:0:140:4973:-447.718,-42.1442,0
chr08	4524791	.	C	A	39724.4	PASS	AB=0.596496;ABP=303.069;AC=36;AF=0.193548;AN=186;AO=2223;CIGAR=1X;DP=8370;DPB=8370;DPRA=1.32563;EPP=4760.96;EPPR=12881.6;GTI=6;LEN=1;MEANALT=1.1;MQM=59.9078;MQMR=59.9396;NS=93;NUMALT=1;ODDS=3.57874;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79510;QR=219945;RO=6141;RPL=8;RPP=4760.96;RPPR=12881.6;RPR=2215;RUN=1;SAF=0;SAP=4830.19;SAR=2223;SRF=0;SRP=13338;SRR=6141;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/0:131:131,0:131:4712:0:0:0,-39.4349,-424.229	0/1:109:39,70:39:1404:70:2495:-191.99,0,-93.847	0/0:128:128,0:128:4591:0:0:0,-38.5318,-413.348	0/1:124:48,75:48:1720:75:2700:-205.857,0,-117.699	0/1:62:24,38:24:864:38:1364:-104.397,0,-59.4105	0/0:90:90,0:90:3223:0:0:0,-27.0927,-290.291	0/0:161:159,0:159:5676:0:0:0,-47.8638,-510.582	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.425	0/0:112:112,0:112:3999:0:0:0,-33.7154,-360.1	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.199	0/0:47:47,0:47:1677:0:0:0,-14.1484,-151.198	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.756	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:168:168,0:168:6036:0:0:0,-50.573,-543.076	0/0:144:144,0:144:5151:0:0:0,-43.3483,-463.731	0/1:165:45,120:45:1612:120:4312:-338.585,0,-95.7001	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.045	0/1:167:81,86:81:2916:86:3084:-227.516,0,-212.397	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:424:205,219:205:7352:219:7828:-576.897,0,-534.086	0/1:174:71,103:71:2536:103:3684:-279.384,0,-176.112	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/0:181:181,0:181:6485:0:0:0,-54.4864,-583.732	0/0:164:160,4:160:5708:4:140:0,-36.4243,-500.892	0/1:161:64,96:64:2291:96:3441:-261.369,0,-157.926	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:161:161,0:161:5770:0:0:0,-48.4658,-519.413	0/1:237:108,128:108:3871:128:4564:-339.522,0,-277.172	0/1:30:11,19:11:396:19:684:-52.8594,0,-26.9518	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:140:81,59:81:2887:59:2112:-148.205,0,-217.919	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:165:52,113:52:1864:113:4048:-314.837,0,-118.369	0/1:53:23,30:23:824:30:1076:-81.1983,0,-58.5287	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:137:38,99:38:1355:99:3556:-279.006,0,-81.0077	0/1:129:47,81:47:1679:81:2908:-223.063,0,-112.505	0/1:243:120,123:120:4283:123:4383:-321.338,0,-312.498	0/0:98:98,0:98:3511:0:0:0,-29.5009,-316.199	0/0:136:136,0:136:4871:0:0:0,-40.9401,-438.542	0/0:139:139,0:139:4957:0:0:0,-41.8432,-446.269	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:124:44,80:44:1580:80:2863:-219.802,0,-104.936	0/1:48:15,33:15:536:33:1180:-92.0577,0,-34.1254	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:78:32,46:32:1152:46:1645:-124.858,0,-80.5098	0/1:52:27,25:27:968:25:885:-64.3138,0,-71.7815	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.108	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.706	.:.:.:.:.:.:.:.	0/1:216:75,141:75:2696:141:5059:-390.395,0,-177.861	0/0:165:161,4:161:5768:4:144:0,-36.3563,-505.918	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:50:49,1:49:1760:1:36:0,-11.4532,-155.086	0/0:196:196,0:196:7015:0:0:0,-59.0019,-631.412	0/1:170:36,134:36:1288:134:4765:-377.274,0,-65.0485	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.027	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.061	0/1:44:17,27:17:604:27:968:-74.192,0,-41.4453	0/0:211:211,0:211:7567:0:0:0,-63.5173,-681.067	0/0:106:106,0:106:3777:0:0:0,-31.9092,-340.129	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.763	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:12:7,5:7:252:5:174:-12.3889,0,-19.4166	0/0:117:117,0:117:4193:0:0:0,-35.2205,-377.549	0/1:75:27,48:27:968:48:1709:-131.517,0,-64.8601	0/0:154:154,0:154:5516:0:0:0,-46.3586,-496.561	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:90:43,47:43:1544:47:1665:-123.02,0,-112.158	0/0:97:96,1:96:3436:1:36:0,-25.6016,-305.855	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:73:31,42:31:1116:42:1497:-113.047,0,-78.7765	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	0/1:70:31,39:31:1101:39:1387:-104.056,0,-78.3263	0/1:53:14,39:14:504:39:1398:-110.165,0,-29.7435	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:75:75,0:75:2669:0:0:0,-22.5772,-240.454
chr08	4568507	.	C	G	22154.1	PASS	AB=0.486703;ABP=7.22588;AC=37;AF=0.198925;AN=186;AO=1344;CIGAR=1X;DP=7351;DPB=7351;DPRA=1.06504;EPP=2904.12;EPPR=12966.8;GTI=2;LEN=1;MEANALT=1.10256;MQM=59.9561;MQMR=59.9903;NS=93;NUMALT=1;ODDS=5.04479;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47766;QR=214682;RO=5998;RPL=2;RPP=2904.12;RPPR=12966.8;RPR=1342;RUN=1;SAF=1344;SAP=2921.47;SAR=0;SRF=5998;SRP=13027.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/0:101:101,0:101:3603:0:0:0,-30.404,-324.477	0/1:151:83,67:83:2971:67:2389:-169.751,0,-222.108	0/0:192:192,0:192:6864:0:0:0,-57.7978,-617.83	0/1:64:45,19:45:1612:19:684:-42.6244,0,-126.1	0/1:19:11,8:11:396:8:288:-20.5396,0,-30.2632	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/0:143:143,0:143:5097:0:0:0,-43.0473,-458.874	0/0:99:99,0:99:3551:0:0:0,-29.802,-319.797	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:93:93,0:93:3335:0:0:0,-27.9958,-300.366	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.549	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.506	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:137:137,0:137:4920:0:0:0,-41.2411,-442.949	0/0:140:139,0:139:4980:0:0:0,-41.8432,-447.988	0/1:60:25,35:25:900:35:1218:-91.8575,0,-63.2592	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:35:20,15:20:716:15:536:-38.0388,0,-54.2317	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/1:188:87,101:87:3098:101:3590:-266.712,0,-222.454	0/1:176:90,86:90:3204:86:3056:-222.287,0,-235.603	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:255:255,0:255:9111:0:0:0,-76.7626,-819.955	0/0:114:112,1:112:4011:1:36:0,-30.7779,-357.58	0/1:61:25,36:25:896:36:1292:-98.2209,0,-62.5975	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:153:153,0:153:5478:0:0:0,-46.0576,-493.146	0/1:78:28,50:28:1004:50:1769:-136.01,0,-67.1955	0/1:46:25,21:25:900:21:754:-54.3395,0,-67.4736	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:132:91,41:91:3256:41:1451:-91.1477,0,-253.525	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:134:67,67:67:2412:67:2387:-174.748,0,-176.998	0/1:47:25,22:25:883:22:788:-57.0964,0,-65.639	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.585	0/1:133:64,68:64:2295:68:2406:-176.698,0,-166.715	0/1:107:57,50:57:2022:50:1769:-127.28,0,-150.041	0/1:159:101,58:101:3632:58:2052:-137.086,0,-279.22	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:98:98,0:98:3511:0:0:0,-29.5009,-316.199	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:115:67,48:67:2404:48:1703:-118.936,0,-181.998	0/1:65:36,29:36:1287:29:1034:-73.7998,0,-96.5658	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:121:57,64:57:2044:64:2280:-169.035,0,-147.807	0/1:27:12,15:12:432:15:510:-38.0918,0,-31.0934	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:94:94,0:94:3371:0:0:0,-28.2968,-303.605	.:.:.:.:.:.:.:.	0/1:145:68,76:68:2427:76:2711:-200.673,0,-175.125	0/0:143:143,0:143:5126:0:0:0,-43.0473,-461.452	0/0:56:56,0:56:1998:0:0:0,-16.8577,-180.092	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:119:119,0:119:4245:0:0:0,-35.8226,-382.229	0/1:154:49,105:49:1760:105:3723:-288.91,0,-112.325	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.487	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:118:118,0:118:4223:0:0:0,-35.5215,-380.25	0/1:137:76,61:76:2728:61:2154:-152.883,0,-204.522	0/0:121:121,0:121:4327:0:0:0,-36.4246,-389.606	0/0:162:161,1:161:5780:1:36:0,-45.1686,-516.714	0/0:104:104,0:104:3735:0:0:0,-31.3071,-336.349	0/0:104:103,0:103:3685:0:0:0,-31.0061,-331.64	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/0:88:88,0:88:3147:0:0:0,-26.4906,-283.455	0/1:92:66,26:66:2368:26:921:-55.0814,0,-185.683	0/0:170:169,1:169:6025:1:36:0,-47.5768,-538.757	0/0:53:51,0:51:1828:0:0:0,-15.3525,-164.441	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:34:16,18:16:563:18:648:-48.4169,0,-40.7641	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.269	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:43:21,22:21:752:22:792:-58.6614,0,-55.062	0/0:66:65,0:65:2332:0:0:0,-19.5669,-209.78	0/1:39:21,18:21:756:18:648:-46.9117,0,-56.6271	0/1:63:28,35:28:1000:35:1256:-94.3804,0,-71.3505	0/1:61:16,45:16:572:45:1608:-126.647,0,-33.4506	0/0:127:127,0:127:4543:0:0:0,-38.2308,-409.036	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145
chr08	4574470	.	A	C	22559.2	PASS	AB=0.500373;ABP=3.01354;AC=35;AF=0.188172;AN=186;AO=1355;CIGAR=1X;DP=7178;DPB=7178;DPRA=1.19765;EPP=2910.71;EPPR=12519.7;GTI=0;LEN=1;MEANALT=1.04651;MQM=59.9601;MQMR=60;NS=93;NUMALT=1;ODDS=2.38188;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48235;QR=207888;RO=5820;RPL=4;RPP=2910.71;RPPR=12519.7;RPR=1351;RUN=1;SAF=0;SAP=2945.36;SAR=1355;SRF=0;SRP=12641;SRR=5820;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:129:56,73:56:1995:73:2598:-195.235,0,-140.99	0/0:164:164,0:164:5866:0:0:0,-49.3689,-528.05	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/0:123:123,0:123:4360:0:0:0,-37.0267,-392.576	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:94:94,0:94:3365:0:0:0,-28.2968,-303.064	0/0:71:71,0:71:2516:0:0:0,-21.3731,-226.691	0/0:50:50,0:50:1764:0:0:0,-15.0515,-159.041	0/0:70:70,0:70:2511:0:0:0,-21.0721,-226.241	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:130:130,0:130:4652:0:0:0,-39.1339,-418.842	0/0:181:181,0:181:6472:0:0:0,-54.4864,-582.567	0/1:39:12,27:12:428:27:959:-74.8852,0,-27.1186	0/0:96:96,0:96:3397:0:0:0,-28.8989,-305.944	0/1:60:31,29:31:1104:29:1036:-75.4916,0,-81.6088	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:211:118,93:118:4240:93:3319:-235.411,0,-318.26	0/1:174:100,74:100:3571:74:2644:-185.828,0,-269.218	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:156:156,0:156:5587:0:0:0,-46.9607,-502.952	0/0:111:108,2:108:3857:2:72:0,-26.5432,-340.533	0/1:77:44,33:44:1580:33:1180:-83.3287,0,-119.312	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:172:172,0:172:6165:0:0:0,-51.7772,-554.946	0/1:65:39,26:39:1396:26:936:-64.9925,0,-106.372	0/1:57:29,28:29:1040:28:984:-71.7119,0,-76.7557	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:93:40,52:40:1436:52:1864:-140.132,0,-101.629	0/1:34:18,16:18:618:16:567:-41.1257,0,-45.7032	0/1:82:31,51:31:1108:51:1818:-139.217,0,-75.3465	0/1:94:40,54:40:1427:54:1927:-145.409,0,-100.43	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.61	0/1:74:39,35:39:1392:35:1237:-89.3567,0,-103.303	0/1:61:24,37:24:860:37:1324:-101.099,0,-59.359	0/1:102:63,39:63:2240:39:1387:-94.4231,0,-171.156	0/0:76:76,0:76:2706:0:0:0,-22.8783,-243.783	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/0:92:91,0:91:3272:0:0:0,-27.3937,-294.339	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:70:40,30:40:1436:30:1070:-75.5378,0,-108.466	0/1:66:33,33:33:1170:33:1180:-86.6401,0,-85.7379	0/1:7:2,5:2:72:5:169:-13.4343,0,-4.72951	0/1:104:55,49:55:1972:49:1742:-125.756,0,-146.448	0/1:38:19,19:19:680:19:684:-50.4512,0,-50.09	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:88:86,2:86:3025:2:57:0,-21.0773,-267.066	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:146:81,65:81:2899:65:2316:-164.747,0,-217.195	0/0:143:143,0:143:5116:0:0:0,-43.0473,-460.583	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:267:263,4:263:9348:4:144:0,-67.0614,-827.976	0/1:166:87,79:87:3091:79:2795:-201.447,0,-228.445	0/0:45:45,0:45:1589:0:0:0,-13.5463,-143.298	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:123:123,0:123:4366:0:0:0,-37.0267,-393.114	0/1:83:50,33:50:1800:33:1184:-81.8828,0,-137.297	0/0:163:163,0:163:5844:0:0:0,-49.0679,-526.071	0/0:123:121,2:121:4344:2:68:0,-30.569,-384.676	0/0:37:36,1:36:1292:1:36:0,-7.53983,-112.985	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:79:78,1:78:2804:1:36:0,-20.1831,-249.001	0/1:92:44,48:44:1580:48:1716:-127.031,0,-114.797	0/0:141:141,0:141:5059:0:0:0,-42.4452,-455.453	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/1:50:29,21:29:1022:21:738:-51.6899,0,-77.2394	0/0:150:149,1:149:5310:1:36:0,-41.5562,-474.435	0/0:19:19,0:19:655:0:0:0,-5.71957,-59.2711	0/1:55:29,26:29:1006:26:936:-68.0028,0,-74.2899	0/0:75:75,0:75:2660:0:0:0,-22.5772,-239.645	0/1:58:32,26:32:1137:26:932:-66.7391,0,-85.1772	0/1:168:66,102:66:2368:102:3610:-274.533,0,-162.805	0/1:154:46,108:46:1624:108:3818:-297.456,0,-100.088	0/0:152:152,0:152:5444:0:0:0,-45.7566,-490.089	0/0:107:106,1:106:3788:1:36:0,-28.6119,-337.521
chr08	4574495	.	G	C	22517.1	PASS	AB=0.505441;ABP=3.69556;AC=35;AF=0.188172;AN=186;AO=1364;CIGAR=1X;DP=7061;DPB=7061;DPRA=1.21016;EPP=2964.9;EPPR=12367.4;GTI=0;LEN=1;MEANALT=1.06667;MQM=59.9663;MQMR=59.9937;NS=93;NUMALT=1;ODDS=4.93521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48567;QR=202361;RO=5694;RPL=1364;RPP=2964.9;RPPR=12367.4;RPR=0;RUN=1;SAF=0;SAP=2964.9;SAR=1364;SRF=0;SRP=12367.4;SRR=5694;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1060:0:0:0,-9.0309,-95.7113	0/0:77:77,0:77:2732:0:0:0,-23.1793,-246.124	0/1:129:57,72:57:2007:72:2554:-191.275,0,-142.07	0/0:164:164,0:164:5832:0:0:0,-49.3689,-524.998	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/0:118:118,0:118:4190:0:0:0,-35.5215,-377.284	0/0:83:83,0:83:2948:0:0:0,-24.9855,-265.555	0/0:102:101,1:101:3600:1:36:0,-27.1068,-320.61	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.55	0/0:66:66,0:66:2325:0:0:0,-19.868,-209.509	0/0:92:92,0:92:3271:0:0:0,-27.6948,-294.611	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/0:71:71,0:71:2523:0:0:0,-21.3731,-227.322	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/0:121:121,0:121:4316:0:0:0,-36.4246,-388.618	0/0:168:168,0:168:5917:0:0:0,-50.573,-532.65	0/1:39:12,27:12:428:27:968:-75.6972,0,-27.1186	0/0:90:90,0:90:3173:0:0:0,-27.0927,-285.796	0/1:57:30,26:30:1068:26:928:-66.7651,0,-79.3597	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:212:117,95:117:4164:95:3408:-243.116,0,-311.127	0/1:172:96,75:96:3428:75:2669:-188.619,0,-256.898	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:153:153,0:153:5437:0:0:0,-46.0576,-489.462	0/0:110:108,2:108:3820:2:72:0,-26.2766,-337.165	0/1:82:48,34:48:1712:34:1209:-84.4297,0,-129.681	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/0:13:13,0:13:452:0:0:0,-3.91339,-41.0111	.:.:.:.:.:.:.:.	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:165:165,0:165:5874:0:0:0,-49.6699,-528.774	0/1:63:36,27:36:1272:27:968:-68.4725,0,-95.818	0/1:57:30,27:30:1050:27:968:-70.2787,0,-77.2204	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:94:41,53:41:1456:53:1885:-141.63,0,-103.039	0/1:34:18,16:18:640:16:576:-41.94,0,-47.6943	0/1:85:31,54:31:1092:54:1932:-148.569,0,-73.002	0/1:94:40,54:40:1420:54:1921:-144.868,0,-99.8006	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:73:36,37:36:1272:37:1321:-97.2157,0,-92.8077	0/1:59:22,37:22:792:37:1324:-101.701,0,-53.8449	0/1:101:62,39:62:2216:39:1377:-93.8226,0,-169.301	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:93:93,0:93:3320:0:0:0,-27.9958,-299.019	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:70:40,30:40:1432:30:1065:-75.0877,0,-108.105	0/1:66:33,33:33:1172:33:1172:-85.9195,0,-85.9195	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:106:55,51:55:1948:51:1809:-131.18,0,-143.687	0/1:40:19,21:19:680:21:744:-55.2431,0,-49.488	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:88:85,3:85:3014:3:104:0,-16.7878,-261.789	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:146:78,68:78:2792:68:2392:-171.579,0,-207.57	0/0:135:135,0:135:4820:0:0:0,-40.639,-433.957	0/0:33:33,0:33:1160:0:0:0,-9.93399,-104.707	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/0:255:251,4:251:8889:4:144:0,-63.449,-786.693	0/1:165:86,79:86:3060:79:2785:-201.159,0,-225.961	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/0:47:45,1:45:1592:1:36:0,-10.6089,-139.972	0/0:31:31,0:31:1091:0:0:0,-9.33193,-98.4987	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/0:113:113,0:113:4020:0:0:0,-34.0164,-361.991	0/1:79:46,33:46:1633:33:1180:-82.7267,0,-123.475	0/0:162:162,0:162:5752:0:0:0,-48.7669,-517.802	0/0:121:119,2:119:4244:2:72:0,-29.5879,-375.304	0/0:37:36,1:36:1276:1:36:0,-7.53983,-111.545	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:74:73,1:73:2604:1:36:0,-18.6779,-231.011	0/1:96:44,52:44:1576:52:1856:-138.421,0,-113.233	0/0:144:144,0:144:5160:0:0:0,-43.3483,-464.54	0/0:63:63,0:63:2238:0:0:0,-18.9649,-201.683	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:50:30,20:30:1054:20:716:-49.7162,0,-80.1177	0/0:152:151,1:151:5390:1:36:0,-42.1583,-481.633	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:56:31,25:31:1095:25:892:-63.742,0,-82.0014	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/1:55:30,25:30:1049:25:882:-63.1407,0,-78.1613	0/1:163:64,99:64:2251:99:3534:-269.199,0,-153.783	0/1:144:42,102:42:1489:102:3628:-283.378,0,-90.9542	0/0:144:144,0:144:5088:0:0:0,-43.3483,-458.072	0/0:102:101,1:101:3593:1:36:0,-27.1068,-319.978
chr08	4627807	.	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chr08	4652593	.	C	A	24500.1	PASS	AB=0.510899;ABP=6.03971;AC=36;AF=0.191489;AN=188;AO=1543;CIGAR=1X;DP=7809;DPB=7809;DPRA=1.53109;EPP=3353.59;EPPR=13592.1;GTI=0;LEN=1;MEANALT=1.08772;MQM=59.8691;MQMR=59.985;NS=94;NUMALT=1;ODDS=3.14756;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53911;QR=215536;RO=6258;RPL=0;RPP=3353.59;RPPR=13592.1;RPR=1543;RUN=1;SAF=1543;SAP=3353.59;SAR=0;SRF=6258;SRP=13592.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:61:58,3:58:2013:3:96:0,-9.40706,-172.431	0/0:65:65,0:65:2212:0:0:0,-19.5669,-199.344	0/1:138:84,54:84:2893:54:1887:-128.561,0,-219.068	0/0:162:160,2:160:5504:2:61:0,-42.9736,-489.701	0/1:56:26,30:26:920:30:1021:-74.7051,0,-66.2594	0/1:59:37,22:37:1272:22:750:-50.0516,0,-97.0167	0/0:114:114,0:114:3930:0:0:0,-34.3174,-353.896	0/0:224:223,1:223:7761:1:26:0,-64.8309,-695.941	0/0:143:141,2:141:4919:2:46:0,-38.6799,-438.503	0/0:59:59,0:59:2072:0:0:0,-17.7608,-186.752	0/0:42:42,0:42:1435:0:0:0,-12.6433,-129.444	0/0:60:60,0:60:2030:0:0:0,-18.0618,-182.968	0/0:66:66,0:66:2265:0:0:0,-19.868,-204.114	0/0:61:60,1:60:2054:1:20:0,-16.3629,-183.132	0/0:41:41,0:41:1413:0:0:0,-12.3422,-127.464	0/0:30:29,1:29:991:1:36:0,-5.43262,-85.8999	0/0:28:28,0:28:954:0:0:0,-8.42884,-86.1682	0/0:20:20,0:20:695:0:0:0,-6.0206,-62.8714	0/0:20:20,0:20:676:0:0:0,-6.0206,-61.1571	0/0:189:188,0:188:6454:0:0:0,-56.5936,-580.746	0/0:179:176,3:176:5973:3:82:0,-46.2328,-530.051	0/1:67:23,44:23:761:44:1533:-118.09,0,-48.6269	0/0:98:98,0:98:3355:0:0:0,-29.5009,-302.172	0/1:39:15,24:15:517:24:839:-64.0865,0,-35.1144	0/0:107:103,2:103:3593:2:49:0,-27.2831,-319.016	0/1:238:117,121:117:4042:121:4257:-311.662,0,-292.329	0/1:166:90,76:90:3088:76:2692:-192.553,0,-228.18	0/0:19:19,0:19:639:0:0:0,-5.71957,-57.8265	0/0:198:197,1:197:6820:1:21:0,-57.504,-611.788	0/0:124:113,10:113:3970:10:356:0,-4.90505,-325.122	0/1:80:40,40:40:1428:40:1425:-104.463,0,-104.735	0/1:3:1,2:1:21:2:72:-5.93363,0,-1.19686	0/0:24:24,0:24:841:0:0:0,-7.22472,-76.0064	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6551	0/0:17:16,1:16:555:1:21:0,-3.01756,-48.1761	0/0:114:113,1:113:3796:1:21:0,-32.2175,-339.75	0/1:66:34,32:34:1129:32:1137:-82.769,0,-82.0333	0/1:29:11,18:11:376:18:636:-48.8376,0,-25.4394	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:164:72,92:72:2479:92:3250:-243.352,0,-173.963	0/1:26:11,15:11:376:15:536:-40.748,0,-26.3425	0/1:177:92,85:92:3205:85:3011:-217.936,0,-235.393	0/1:48:22,26:22:760:26:932:-69.7494,0,-54.2692	0/0:16:16,0:16:516:0:0:0,-4.81648,-46.7488	0/1:126:61,65:61:2133:65:2298:-169.148,0,-154.308	0/1:113:50,62:50:1707:62:2118:-156.923,0,-119.952	0/1:173:96,77:96:3302:77:2711:-192.152,0,-245.323	0/0:68:68,0:68:2304:0:0:0,-20.47,-207.616	0/0:102:102,0:102:3523:0:0:0,-30.7051,-317.283	0/0:177:174,3:174:5969:3:108:0,-43.2071,-527.253	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:136:71,65:71:2473:65:2276:-164.158,0,-181.88	0/1:102:63,39:63:2211:39:1385:-94.2418,0,-168.55	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/1:120:61,58:61:2136:58:1960:-140.504,0,-156.423	0/1:18:11,7:11:384:7:233:-15.8758,0,-29.4761	0/0:13:13,0:13:436:0:0:0,-3.91339,-39.5598	0/1:19:10,9:10:345:9:324:-23.7863,0,-25.6613	0/0:97:97,0:97:3373:0:0:0,-29.1999,-303.787	0/0:76:74,2:74:2496:2:57:0,-17.465,-219.482	0/0:25:25,0:25:853:0:0:0,-7.52575,-77.0785	0/1:142:79,63:79:2705:63:2230:-158.193,0,-200.948	0/0:93:93,0:93:3258:0:0:0,-27.9958,-293.443	0/0:90:89,1:89:3015:1:25:0,-24.5928,-269.08	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.776	0/0:141:137,4:137:4636:4:144:0,-29.1316,-404.1	0/1:152:41,111:41:1425:111:3934:-308.491,0,-82.7844	0/0:36:36,0:36:1234:0:0:0,-10.8371,-111.357	0/0:32:32,0:32:1125:0:0:0,-9.63296,-101.55	0/0:45:45,0:45:1511:0:0:0,-13.5463,-136.275	0/0:31:31,0:31:1074:0:0:0,-9.33193,-96.9665	0/0:134:133,1:133:4630:1:25:0,-38.1912,-414.725	0/1:81:38,43:38:1316:43:1502:-111.086,0,-94.3531	0/0:175:174,1:174:6106:1:21:0,-50.5803,-547.145	0/0:145:145,0:145:5033:0:0:0,-43.6493,-453.125	0/0:202:202,0:202:6994:0:0:0,-60.8081,-629.545	0/0:128:127,1:127:4422:1:24:0,-36.1319,-395.757	0/1:3:2,1:2:57:1:36:-2.69518,0,-4.51022	0/0:96:96,0:96:3287:0:0:0,-28.8989,-296.048	0/1:126:83,43:83:2912:43:1492:-96.6384,0,-224.387	0/0:166:165,1:165:5681:1:21:0,-47.871,-509.323	0/0:41:40,1:40:1347:1:24:0,-9.94234,-119.126	0/0:61:60,0:60:2068:0:0:0,-18.0618,-186.031	0/1:29:10,19:10:340:19:665:-51.4429,0,-22.1992	0/0:85:85,0:85:2900:0:0:0,-25.5875,-261.238	0/0:17:17,0:17:576:0:0:0,-5.11751,-52.1607	0/1:67:20,47:20:664:47:1633:-127.084,0,-39.9022	0/0:58:58,0:58:1943:0:0:0,-17.4597,-175.142	0/1:31:11,20:11:384:20:690:-53.0849,0,-25.5627	0/1:81:28,53:28:956:53:1865:-143.744,0,-61.9216	0/1:46:16,29:16:552:29:1009:-77.2126,0,-36.1003	0/0:135:135,0:135:4534:0:0:0,-40.639,-408.237	0/0:60:60,0:60:2034:0:0:0,-18.0618,-183.331
chr08	4652660	.	A	T	37486.9	PASS	AB=0.451083;ABP=106.684;AC=36;AF=0.191489;AN=188;AO=2263;CIGAR=1X;DP=13682;DPB=13682;DPRA=1.06036;EPP=4779.06;EPPR=24263.3;GTI=2;LEN=1;MEANALT=1.04762;MQM=59.9125;MQMR=59.9795;NS=94;NUMALT=1;ODDS=2.23623;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81144;QR=409012;RO=11411;RPL=2247;RPP=4779.06;RPPR=24254.7;RPR=16;RUN=1;SAF=0;SAP=4917.05;SAR=2263;SRF=1;SRP=24773;SRR=11410;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.584	0/0:222:222,0:222:7946:0:0:0,-66.8287,-715.162	0/1:214:112,102:112:4015:102:3668:-265.523,0,-297.117	0/0:303:303,0:303:10835:0:0:0,-91.2121,-975.047	0/1:85:52,33:52:1872:33:1173:-80.288,0,-143.172	0/1:87:41,46:41:1458:46:1656:-123.139,0,-105.325	0/0:141:140,1:140:5010:1:36:0,-38.847,-447.446	0/0:246:246,0:246:8803:0:0:0,-74.0534,-792.257	0/0:118:118,0:118:4227:0:0:0,-35.5215,-379.832	0/0:96:96,0:96:3435:0:0:0,-28.8989,-309.363	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.078	0/0:84:83,0:83:2967:0:0:0,-24.9855,-266.903	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.416	0/0:110:110,0:110:3935:0:0:0,-33.1133,-354.342	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.784	0/0:135:135,0:135:4852:0:0:0,-40.639,-436.832	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:279:279,0:279:10008:0:0:0,-83.9874,-900.654	0/0:325:325,0:325:11618:0:0:0,-97.8347,-1045.38	0/1:143:56,87:56:1984:87:3120:-237.971,0,-135.785	0/0:131:128,0:128:4572:0:0:0,-38.5318,-411.297	0/1:232:122,110:122:4376:110:3929:-283.876,0,-324.174	0/0:154:154,0:154:5494:0:0:0,-46.3586,-494.429	0/1:577:331,246:331:11884:246:8829:-620.893,0,-895.717	0/1:342:185,156:185:6632:156:5600:-401.086,0,-493.947	0/0:66:66,0:66:2354:0:0:0,-19.868,-212.118	0/0:378:378,0:378:13567:0:0:0,-113.789,-1220.81	0/0:153:147,6:147:5284:6:216:0,-26.2671,-455.902	0/1:142:86,56:86:3071:56:2004:-137.885,0,-233.786	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.3643	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:223:223,0:223:8008:0:0:0,-67.1297,-720.681	0/1:204:143,61:143:5128:61:2176:-134.502,0,-400.249	0/1:88:42,46:42:1508:46:1633:-120.758,0,-109.524	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:217:130,87:130:4645:87:3124:-216.053,0,-352.888	0/1:46:29,17:29:1035:17:612:-41.5661,0,-79.6157	0/1:156:98,58:98:3499:58:2088:-141.229,0,-268.16	0/1:138:76,62:76:2736:62:2220:-158.522,0,-204.937	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/1:170:82,88:82:2931:88:3164:-233.809,0,-212.848	0/1:149:93,56:93:3340:56:1985:-134.066,0,-255.963	0/1:262:173,89:173:6228:89:3192:-208.633,0,-481.741	0/0:155:155,0:155:5555:0:0:0,-46.6596,-500.073	0/0:272:272,0:272:9768:0:0:0,-81.8802,-879.062	0/0:202:202,0:202:7248:0:0:0,-60.8081,-652.371	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:134:76,58:76:2732:58:2076:-146.764,0,-205.784	0/1:32:19,13:19:684:13:468:-32.8258,0,-52.2574	0/1:22:10,12:10:356:12:428:-32.2361,0,-25.7539	0/1:115:65,50:65:2302:50:1796:-127.304,0,-172.822	0/1:68:30,38:30:1080:38:1360:-102.231,0,-77.0432	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.438	0/0:158:156,2:156:5608:2:72:0,-40.726,-498.002	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:287:171,116:171:6119:116:4159:-288.095,0,-464.414	0/0:297:296,0:296:10627:0:0:0,-89.1049,-955.975	0/0:148:147,1:147:5268:1:36:0,-40.9542,-470.657	0/0:98:98,0:98:3476:0:0:0,-29.5009,-313.052	0/0:317:316,1:316:11315:1:36:0,-91.8282,-1014.63	0/1:94:43,51:43:1523:51:1836:-137.224,0,-109.066	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:156:156,0:156:5583:0:0:0,-46.9607,-502.592	0/0:123:123,0:123:4428:0:0:0,-37.0267,-398.689	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:199:199,0:199:7132:0:0:0,-59.905,-641.918	0/1:93:49,44:49:1760:44:1580:-114.496,0,-130.688	0/0:224:224,0:224:8036:0:0:0,-67.4307,-723.257	0/0:297:297,0:297:10651:0:0:0,-89.4059,-958.496	0/0:258:258,0:258:9272:0:0:0,-77.6657,-834.442	0/0:227:227,0:227:8136:0:0:0,-68.3338,-732.254	0/1:27:18,9:18:639:9:320:-21.0145,0,-49.7104	0/0:203:203,0:203:7291:0:0:0,-61.1091,-656.236	0/1:222:108,114:108:3867:114:4096:-301.995,0,-281.396	0/0:407:405,2:405:14503:2:61:0,-116.726,-1299.22	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.055	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:144:72,72:72:2588:72:2584:-189.452,0,-189.82	0/0:194:194,0:194:6958:0:0:0,-58.3998,-626.282	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:110:56,54:56:2016:54:1944:-142.122,0,-148.6	0/0:87:87,0:87:3123:0:0:0,-26.1896,-281.295	0/1:84:32,50:32:1152:50:1800:-137.257,0,-78.96	0/1:153:65,88:65:2336:88:3160:-238.567,0,-164.442	0/1:91:39,52:39:1404:52:1863:-140.536,0,-99.2655	0/0:153:153,0:153:5504:0:0:0,-46.0576,-495.483	0/0:171:171,0:171:6127:0:0:0,-51.4761,-551.529
chr08	4700215	.	T	C	30672.1	PASS	AB=0.539673;ABP=49.0139;AC=36;AF=0.195652;AN=184;AO=1837;CIGAR=1X;DP=8785;DPB=8785;DPRA=1.06388;EPP=3974.65;EPPR=15047;GTI=0;LEN=1;MEANALT=1.08333;MQM=58.6217;MQMR=59.8052;NS=92;NUMALT=1;ODDS=1.36539;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64770;QR=246564;RO=6944;RPL=1835;RPP=3974.65;RPPR=15047;RPR=2;RUN=1;SAF=1837;SAP=3992.01;SAR=0;SRF=6944;SRP=15081.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7674	0/0:133:133,0:133:4725:0:0:0,-40.037,-425.403	0/1:137:87,50:87:3092:50:1774:-118.656,0,-237.264	0/0:165:165,0:165:5863:0:0:0,-49.6699,-527.629	0/1:37:19,18:19:684:18:648:-47.4203,0,-50.7507	0/1:64:29,35:29:1044:35:1235:-92.1875,0,-74.9982	0/0:81:81,0:81:2844:0:0:0,-24.3834,-255.569	0/0:156:156,0:156:5525:0:0:0,-46.9607,-497.307	0/0:49:49,0:49:1729:0:0:0,-14.7505,-155.888	0/0:163:163,0:163:5791:0:0:0,-49.0679,-521.295	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.196	0/0:142:142,0:142:4964:0:0:0,-42.7463,-446.912	0/0:122:122,0:122:4335:0:0:0,-36.7257,-390.324	0/0:51:51,0:51:1796:0:0:0,-15.3525,-161.919	0/0:90:89,1:89:3184:1:36:0,-23.497,-283.184	0/0:56:56,0:56:1985:0:0:0,-16.8577,-178.922	0/0:66:66,0:66:2301:0:0:0,-19.868,-207.347	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.334	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.602	0/0:155:155,0:155:5495:0:0:0,-46.6596,-494.332	0/0:98:97,1:97:3410:1:36:0,-25.9044,-303.484	0/1:74:19,55:19:680:55:1963:-154.565,0,-39.248	0/0:96:95,1:95:3375:1:32:0,-25.7006,-300.748	0/1:115:64,51:64:2246:51:1804:-127.847,0,-167.781	0/0:107:104,3:104:3675:3:108:0,-22.135,-320.875	0/1:268:114,154:114:4063:154:5417:-405.955,0,-285.161	0/1:195:87,107:87:3105:107:3772:-280.894,0,-220.946	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.097	0/0:201:200,1:200:7148:1:36:0,-56.9098,-639.744	0/0:100:97,3:97:3465:3:108:0,-20.0278,-301.984	0/1:122:51,70:51:1811:70:2493:-187.63,0,-126.491	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2658	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0257	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6638	0/0:236:236,0:236:8351:0:0:0,-71.0431,-751.57	0/1:173:77,95:77:2746:95:3362:-250.524,0,-195.229	0/1:56:29,27:29:1024:27:928:-66.8963,0,-75.5925	.:.:.:.:.:.:.:.	0/1:150:86,64:86:3055:64:2270:-159.407,0,-230.021	0/1:30:16,14:16:568:14:474:-33.9513,0,-42.421	0/1:144:66,78:66:2364:78:2726:-202.226,0,-169.664	0/1:64:22,42:22:763:42:1444:-110.563,0,-49.7226	0/0:60:60,0:60:2115:0:0:0,-18.0618,-190.617	0/1:169:80,89:80:2855:89:3122:-230.135,0,-206.307	0/1:102:51,51:51:1808:51:1786:-130.244,0,-132.291	0/1:154:73,81:73:2567:81:2895:-214.307,0,-184.91	0/0:98:98,0:98:3468:0:0:0,-29.5009,-312.328	0/0:85:84,1:84:2970:1:36:0,-21.9897,-263.918	0/0:165:165,0:165:5865:0:0:0,-49.6699,-527.734	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:156:66,90:66:2368:90:3195:-240.653,0,-166.412	0/1:38:13,25:13:455:25:888:-68.7778,0,-29.8395	0/1:18:3,15:3:108:15:540:-43.518,0,-4.65663	0/1:101:48,53:48:1724:53:1874:-137.752,0,-125.02	0/1:60:21,39:21:756:39:1339:-102.637,0,-50.3054	0/1:7:6,1:6:203:1:36:-1.49006,0,-16.4906	0/1:16:2,14:2:68:14:495:-40.0551,0,-1.64123	0/0:41:41,0:41:1448:0:0:0,-12.3422,-130.607	0/0:134:134,0:134:4747:0:0:0,-40.338,-427.38	.:.:.:.:.:.:.:.	0/1:198:102,96:102:3650:96:3407:-246.938,0,-269.092	0/0:142:139,3:139:4934:3:108:0,-32.6723,-434.085	0/0:115:115,0:115:4076:0:0:0,-34.6184,-367.024	0/0:65:65,0:65:2304:0:0:0,-19.5669,-207.617	0/0:184:181,3:181:6427:3:108:0,-45.3156,-568.428	0/1:176:57,119:57:2040:119:4238:-328.225,0,-130.885	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5043	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.615	0/0:75:75,0:75:2674:0:0:0,-22.5772,-240.795	0/0:12:12,0:12:414:0:0:0,-3.61236,-37.5866	0/0:171:171,0:171:6096:0:0:0,-51.4761,-548.736	0/1:99:50,49:50:1768:49:1732:-126.212,0,-129.525	0/0:114:113,1:113:4029:1:36:0,-30.7209,-358.563	0/0:135:135,0:135:4803:0:0:0,-40.639,-432.415	0/0:60:59,1:59:2084:1:27:0,-15.362,-185.126	0/0:77:74,2:74:2635:2:72:0,-16.4013,-230.554	0/1:9:5,4:5:176:4:144:-10.5673,0,-13.4757	0/0:92:92,0:92:3287:0:0:0,-27.6948,-296.042	0/1:62:25,37:25:884:37:1274:-96.2266,0,-61.2127	0/0:245:245,0:245:8716:0:0:0,-73.7523,-784.411	0/0:139:139,0:139:4937:0:0:0,-41.8432,-444.473	0/0:69:69,0:69:2435:0:0:0,-20.7711,-219.4	0/1:99:46,53:46:1628:53:1871:-138.759,0,-116.999	0/0:176:176,0:176:6271:0:0:0,-52.9813,-564.479	0/0:54:54,0:54:1892:0:0:0,-16.2556,-170.554	0/1:90:51,39:51:1820:39:1368:-96.2431,0,-136.978	0/0:101:101,0:101:3590:0:0:0,-30.404,-323.3	0/1:34:18,16:18:639:16:545:-39.0823,0,-47.6032	0/1:76:38,38:38:1306:38:1321:-96.3068,0,-94.9563	0/1:66:22,44:22:780:44:1539:-118.866,0,-50.6527	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.588	0/0:142:142,0:142:5065:0:0:0,-42.7463,-455.983
chr08	4700223	.	C	T	148882	PASS	AB=0.457396;ABP=56.2975;AC=148;AF=0.804348;AN=184;AO=6924;CIGAR=1X;DP=8777;DPB=8777;DPRA=0;EPP=15038.3;EPPR=4026.75;GTI=0;LEN=1;MEANALT=1;MQM=59.7835;MQMR=58.6217;NS=92;NUMALT=1;ODDS=0.736616;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247197;QR=65967;RO=1853;RPL=6924;RPP=15038.3;RPPR=4026.75;RPR=0;RUN=1;SAF=6924;SAP=15038.3;SAR=0;SRF=1853;SRP=4026.75;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1108:-100.03,-9.33193,0	1/1:132:0,132:0:0:132:4716:-424.592,-39.736,0	0/1:137:50,87:50:1780:87:3116:-239.424,0,-119.197	1/1:162:0,162:0:0:162:5738:-516.383,-48.7669,0	0/1:37:18,19:18:640:19:671:-49.576,0,-46.6977	0/1:63:35,28:35:1248:28:1004:-71.6412,0,-93.66	1/1:81:0,81:0:0:81:2875:-258.359,-24.3834,0	1/1:155:0,155:0:0:155:5552:-499.653,-46.6597,0	1/1:49:0,49:0:0:49:1752:-157.959,-14.7505,0	1/1:163:0,163:0:0:163:5791:-521.292,-49.0679,0	1/1:45:0,45:0:0:45:1616:-145.725,-13.5464,0	1/1:139:0,139:0:0:139:4972:-447.623,-41.8432,0	1/1:119:0,119:0:0:119:4252:-382.856,-35.8226,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:90:0,90:0:0:90:3201:-288.307,-27.0927,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:62:0,62:0:0:62:2212:-199.343,-18.6639,0	1/1:55:0,55:0:0:55:1964:-177.017,-16.5567,0	1/1:48:0,48:0:0:48:1708:-154.004,-14.4494,0	1/1:145:0,145:0:0:145:5171:-465.088,-43.6494,0	1/1:100:0,100:0:0:100:3588:-323.046,-30.103,0	0/1:75:55,20:55:1948:20:716:-42.1856,0,-152.915	1/1:95:0,95:0:0:95:3400:-306.196,-28.5979,0	0/1:118:54,64:54:1898:64:2287:-170.568,0,-135.067	1/1:107:3,104:3:108:104:3720:-324.813,-22.135,0	0/1:270:155,115:155:5491:115:4124:-290.036,0,-412.583	0/1:193:107,86:107:3823:86:3072:-218.6,0,-286.079	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:202:1,201:1:36:201:7185:-643.074,-57.2108,0	1/1:100:3,97:3:108:97:3479:-303.245,-20.0278,0	0/1:122:71,51:71:2529:51:1811:-126.545,0,-190.877	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:8:0,8:0:0:8:288:-26.2658,-2.40824,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:6:0,6:0:0:6:212:-19.4239,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.028,-2.10721,0	1/1:227:0,227:0:0:227:8058:-725.209,-68.3338,0	0/1:180:101,79:101:3598:79:2836:-201.284,0,-269.659	0/1:54:26,28:26:928:28:1000:-74.0373,0,-67.5076	.:.:.:.:.:.:.:.	0/1:148:64,84:64:2238:84:3003:-225.946,0,-157.129	0/1:32:14,18:14:504:18:644:-48.6576,0,-36.0651	0/1:145:78,67:78:2755:67:2389:-171.61,0,-204.515	0/1:63:42,21:42:1496:21:752:-49.0414,0,-115.312	1/1:59:0,59:0:0:59:2090:-188.367,-17.7608,0	0/1:166:86,80:86:3054:80:2864:-208.02,0,-224.927	0/1:106:56,50:56:2000:50:1788:-129.291,0,-148.275	0/1:150:81,69:81:2881:69:2476:-177.927,0,-214.278	1/1:101:0,101:0:0:101:3574:-321.862,-30.404,0	1/1:86:1,85:1:36:85:3034:-269.659,-22.2908,0	1/1:173:0,173:0:0:173:6177:-555.568,-52.0782,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:158:92,66:92:3288:66:2356:-164.73,0,-247.231	0/1:36:25,11:25:896:11:396:-25.1423,0,-70.1011	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:104:52,52:52:1836:52:1856:-135.991,0,-133.47	0/1:59:38,21:38:1355:21:748:-49.4551,0,-104.387	0/1:6:1,5:1:36:5:180:-14.7425,0,-1.79109	0/1:16:14,2:14:504:2:72:-2.02024,0,-40.8693	1/1:45:0,45:0:0:45:1616:-145.723,-13.5464,0	1/1:134:0,134:0:0:134:4757:-428.279,-40.338,0	.:.:.:.:.:.:.:.	0/1:203:98,105:98:3512:105:3759:-277.347,0,-254.875	1/1:147:3,144:3:108:144:5148:-453.309,-34.1775,0	1/1:113:0,113:0:0:113:4044:-364.144,-34.0164,0	1/1:67:0,67:0:0:67:2399:-216.161,-20.169,0	1/1:182:3,179:3:108:179:6415:-567.344,-44.7135,0	0/1:179:121,58:121:4315:58:2057:-131.508,0,-334.225	1/1:8:0,8:0:0:8:288:-26.2658,-2.40824,0	1/1:71:0,71:0:0:71:2544:-229.209,-21.3731,0	1/1:77:0,77:0:0:77:2756:-248.173,-23.1793,0	1/1:12:0,12:0:0:12:432:-39.2188,-3.61236,0	1/1:170:1,169:1:36:169:6056:-541.535,-47.5768,0	0/1:101:49,52:49:1760:52:1864:-137.561,0,-127.819	1/1:118:0,118:0:0:118:4211:-378.788,-35.5215,0	1/1:136:0,136:0:0:136:4851:-436.732,-40.9401,0	1/1:60:2,58:2:72:58:2080:-180.632,-11.2251,0	1/1:77:2,75:2:72:75:2676:-234.242,-16.3426,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.5677	1/1:94:0,94:0:0:94:3376:-304.047,-28.2968,0	0/1:63:38,25:38:1364:25:896:-61.9936,0,-103.96	1/1:244:0,244:0:0:244:8692:-782.252,-73.4513,0	1/1:139:0,139:0:0:139:4940:-444.741,-41.8432,0	1/1:69:0,69:0:0:69:2442:-220.025,-20.7711,0	0/1:100:55,45:55:1968:45:1603:-114.449,0,-147.184	1/1:173:0,173:0:0:173:6187:-556.83,-52.0782,0	1/1:52:0,52:0:0:52:1844:-166.238,-15.6536,0	0/1:87:39,48:39:1396:48:1720:-128.891,0,-99.6697	1/1:100:0,100:0:0:100:3572:-321.681,-30.103,0	0/1:33:15,18:15:536:18:648:-48.7179,0,-38.5957	0/1:76:38,38:38:1346:38:1351:-99.0098,0,-98.5604	0/1:66:44,22:44:1568:22:779:-50.5617,0,-121.483	1/1:79:0,79:0:0:79:2801:-252.32,-23.7814,0	1/1:136:0,136:0:0:136:4859:-437.452,-40.9401,0
chr08	4700386	.	G	T	183.575	PASS	AB=0.166354;ABP=1549.1;AC=20;AF=0.107527;AN=186;AO=374;CIGAR=1X;DP=14251;DPB=14251;DPRA=0.635504;EPP=780.769;EPPR=101.441;GTI=10;LEN=1;MEANALT=1.02381;MQM=59.9866;MQMR=59.9919;NS=93;NUMALT=1;ODDS=42.2698;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=13328;QR=490249;RO=13873;RPL=2;RPP=797.862;RPPR=29522.9;RPR=372;RUN=1;SAF=372;SAP=797.862;SAR=2;SRF=7403;SRP=139.264;SRR=6470;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:108:108,0:108:3783:0:0:0,-32.5112,-340.671	0/0:242:242,0:242:8552:0:0:0,-72.8493,-769.685	0/0:161:155,6:155:5458:6:216:0,-28.6753,-471.563	0/0:363:363,0:363:12748:0:0:0,-109.274,-1147.16	0/0:80:77,3:77:2718:3:108:0,-14.0072,-234.786	0/1:43:39,4:39:1344:4:144:-0.369328,0,-108.308	0/0:199:199,0:199:7029:0:0:0,-59.905,-632.675	0/0:356:355,1:355:12572:1:32:0,-103.967,-1128.12	0/0:231:231,0:231:8148:0:0:0,-69.5379,-733.345	0/0:147:147,0:147:5170:0:0:0,-44.2514,-465.442	0/0:164:164,0:164:5835:0:0:0,-49.3689,-525.264	0/0:245:245,0:245:8624:0:0:0,-73.7523,-776.161	0/0:205:205,0:205:7223:0:0:0,-61.7111,-650.129	0/0:152:152,0:152:5322:0:0:0,-45.7566,-479.117	0/0:187:187,0:187:6602:0:0:0,-56.2926,-594.266	0/0:161:161,0:161:5653:0:0:0,-48.4658,-508.897	0/0:163:163,0:163:5793:0:0:0,-49.0679,-521.485	0/0:172:172,0:172:6117:0:0:0,-51.7772,-550.628	0/0:145:144,0:144:5124:0:0:0,-43.3483,-460.896	0/0:309:309,0:309:11019:0:0:0,-93.0183,-991.605	0/0:311:311,0:311:10946:0:0:0,-93.6203,-985.05	0/1:68:42,26:42:1469:26:928:-63.3682,0,-112.03	0/0:169:169,0:169:6027:0:0:0,-50.8741,-542.534	0/0:87:83,4:83:2959:4:144:0,-12.876,-253.23	0/0:140:140,0:140:4912:0:0:0,-42.1442,-442.23	0/1:213:188,25:188:6678:25:896:-16.841,0,-536.823	0/0:239:226,13:226:7984:13:468:0,-29.4865,-676.13	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/0:375:375,0:375:13276:0:0:0,-112.886,-1194.65	0/0:144:138,6:138:4856:6:216:0,-23.5578,-417.405	0/1:74:67,7:67:2392:7:248:-0.387975,0,-193.261	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:30:30,0:30:1022:0:0:0,-9.0309,-92.2807	0/0:450:449,0:449:15922:0:0:0,-135.162,-1432.32	0/1:87:72,15:72:2552:15:536:-22.3852,0,-203.739	0/0:67:64,3:64:2283:3:108:0,-10.0938,-195.62	.:.:.:.:.:.:.:.	0/1:141:121,20:121:4287:20:716:-22.3225,0,-343.561	0/0:65:61,4:61:2144:4:144:0,-6.25333,-179.912	0/0:158:147,10:147:5171:10:360:0,-14.8772,-432.791	0/0:77:72,5:72:2576:5:180:0,-6.62724,-215.537	0/0:173:173,0:173:6098:0:0:0,-52.0782,-548.924	0/1:96:79,17:79:2788:17:593:-24.7958,0,-222.262	0/0:130:118,12:118:4182:12:428:0,-0.275092,-337.706	0/0:132:121,11:121:4233:11:381:0,-5.11533,-346.532	0/0:149:148,1:148:5250:1:36:0,-41.2552,-469.038	0/0:262:262,0:262:9323:0:0:0,-78.8699,-839.041	0/0:178:178,0:178:6276:0:0:0,-53.5833,-564.938	0/0:16:15,1:15:527:1:36:0,-1.2182,-44.1619	0/1:133:119,14:119:4197:14:500:-5.29919,0,-337.874	0/0:32:31,1:31:1108:1:36:0,-6.03468,-96.4327	0/1:18:16,2:16:572:2:72:-1.41466,0,-46.3949	0/0:125:114,11:114:4032:11:396:0,-1.646,-327.085	0/1:54:48,6:48:1716:6:216:-3.53489,0,-138.47	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9546	0/1:11:10,1:10:351:1:36:-0.286945,0,-28.6153	0/0:172:172,0:172:6046:0:0:0,-51.7772,-544.244	0/0:204:204,0:204:7239:0:0:0,-61.4101,-651.566	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:159:109,50:109:3871:50:1766:-111.356,0,-300.721	0/0:342:342,0:342:12103:0:0:0,-102.952,-1089.13	0/0:140:140,0:140:4941:0:0:0,-42.1442,-444.844	0/0:176:176,0:176:6256:0:0:0,-52.9813,-563.135	0/0:266:264,2:264:9338:2:72:0,-73.2373,-833.556	0/1:76:58,18:58:2048:18:643:-35.3221,0,-161.711	0/0:88:88,0:88:3111:0:0:0,-26.4906,-280.219	0/0:156:156,0:156:5557:0:0:0,-46.9607,-500.253	0/0:160:160,0:160:5607:0:0:0,-48.1648,-504.756	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.272	0/0:131:131,0:131:4607:0:0:0,-39.4349,-414.797	0/1:110:94,16:94:3282:16:576:-19.0617,0,-262.484	0/0:273:273,0:273:9502:0:0:0,-82.1812,-855.154	0/0:257:257,0:257:9097:0:0:0,-77.3647,-818.711	0/0:178:177,1:177:6255:1:36:0,-49.9851,-559.451	0/0:433:433,0:433:15305:0:0:0,-130.346,-1377.09	0/1:19:15,4:15:527:4:144:-7.59405,0,-42.0406	0/0:219:218,1:218:7718:1:36:0,-62.3273,-691.061	0/0:122:115,7:115:4060:7:252:0,-13.6967,-342.559	0/0:379:377,2:377:13354:2:72:0,-107.254,-1194.83	0/0:183:183,0:183:6462:0:0:0,-55.0885,-581.666	0/0:209:209,0:209:7417:0:0:0,-62.9153,-667.578	0/0:115:112,3:112:3965:3:100:0,-25.288,-347.713	0/0:284:284,0:284:10014:0:0:0,-85.4925,-901.208	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/1:69:58,11:58:2058:11:392:-14.849,0,-164.719	0/0:148:147,0:147:5242:0:0:0,-44.2514,-471.52	0/1:60:52,8:52:1841:8:288:-8.20561,0,-147.907	0/1:102:92,10:92:3244:10:345:-0.675764,0,-261.477	0/1:53:43,10:43:1525:10:360:-16.7897,0,-121.587	0/0:171:171,0:171:5995:0:0:0,-51.4761,-539.661	0/0:293:293,0:293:10275:0:0:0,-88.2018,-924.689
chr08	4718200	.	C	A	514391	PASS	AB=0.528746;ABP=61.3107;AC=152;AF=0.808511;AN=188;AO=18608;CIGAR=1X;DP=22468;DPB=22468;DPRA=0;EPP=40409.8;EPPR=8350.15;GTI=1;LEN=1;MEANALT=1.09574;MQM=54.3913;MQMR=56.7877;NS=94;NUMALT=1;ODDS=3.47181;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=665264;QR=136758;RO=3844;RPL=8374;RPP=406.731;RPPR=5.471;RPR=10234;RUN=1;SAF=8374;SAP=406.731;SAR=10234;SRF=1889;SRP=5.471;SRR=1955;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:140:0,140:0:0:140:5032:-451.029,-42.1442,0	1/1:298:0,298:0:0:298:10696:-958.178,-89.7069,0	0/1:580:261,319:261:9326:319:11409:-847.782,0,-663.261	1/1:519:0,517:0:0:517:18503:-1661.64,-155.633,0	0/1:60:18,42:18:644:42:1500:-116.88,0,-39.991	0/1:137:67,70:67:2389:70:2520:-184.988,0,-173.667	1/1:328:0,328:0:0:328:11720:-1052.21,-98.7378,0	1/1:392:0,391:0:0:391:14020:-1253.74,-117.703,0	1/1:361:0,361:0:0:361:12867:-1152.51,-108.672,0	1/1:296:0,296:0:0:296:10573:-948.365,-89.1049,0	1/1:132:0,131:0:0:131:4659:-418.028,-39.4349,0	1/1:239:1,238:1:36:238:8518:-760.842,-68.3479,0	1/1:190:0,190:0:0:190:6805:-610.635,-57.1957,0	1/1:211:0,211:0:0:211:7524:-674.759,-63.5173,0	1/1:178:0,178:0:0:178:6368:-572.105,-53.5833,0	1/1:155:0,155:0:0:155:5550:-496.706,-46.6597,0	1/1:157:0,156:0:0:156:5575:-499.28,-46.9607,0	1/1:134:0,134:0:0:134:4768:-427.514,-40.338,0	1/1:86:0,86:0:0:86:3083:-276.03,-25.8886,0	1/1:503:0,503:0:0:503:17864:-1602.58,-151.418,0	1/1:460:0,459:0:0:459:16400:-1470.6,-138.173,0	0/1:129:88,41:88:3104:41:1472:-93.7704,0,-240.502	1/1:278:1,277:1:36:277:9920:-887.233,-80.0907,0	0/1:272:129,143:129:4573:143:5105:-376.543,0,-328.792	1/1:207:0,207:0:0:207:7390:-661.921,-62.3132,0	0/1:586:230,356:230:8223:356:12710:-965.713,0,-563.092	0/1:673:281,392:281:9981:392:14010:-1053.76,0,-694.504	1/1:115:0,115:0:0:115:4110:-368.786,-34.6185,0	1/1:581:0,581:0:0:581:20750:-1865.14,-174.898,0	1/1:305:6,296:6:212:296:10619:-932.96,-71.9931,0	0/1:289:137,152:137:4855:152:5433:-399.522,0,-349.673	0/1:15:3,12:3:108:12:432:-34.6501,0,-5.54543	1/1:34:0,34:0:0:34:1220:-109.867,-10.235,0	0/1:12:4,8:4:129:8:288:-22.4328,0,-8.29857	1/1:17:0,17:0:0:17:612:-55.2877,-5.11751,0	1/1:20:0,20:0:0:20:720:-65.052,-6.0206,0	1/1:460:0,456:0:0:456:16304:-1464.6,-137.27,0	0/1:332:141,191:141:5024:191:6834:-513.35,0,-351.548	0/1:130:78,52:78:2746:52:1860:-128.104,0,-206.528	1/1:5:0,5:0:0:5:171:-15.5785,-1.50515,0	0/1:311:172,139:172:6139:139:4962:-351.765,0,-458.191	0/1:80:41,39:41:1451:39:1400:-101.411,0,-106.59	0/1:382:162,220:162:5778:220:7876:-591.734,0,-404.246	0/1:190:94,96:94:3355:96:3440:-251.783,0,-244.654	1/1:166:0,166:0:0:166:5943:-532.735,-49.971,0	0/1:249:110,139:110:3947:139:4964:-371.337,0,-280.153	0/1:272:123,149:123:4328:149:5324:-394.985,0,-306.668	0/1:396:180,214:180:6410:214:7647:-568.273,0,-457.232	1/1:276:1,275:1:36:275:9833:-879.824,-79.486,0	1/1:290:0,290:0:0:290:10398:-934.19,-87.2987,0	1/1:265:0,265:0:0:265:9478:-852.2,-79.773,0	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.86863	0/1:388:152,236:152:5377:236:8475:-642.539,0,-365.803	0/1:138:61,77:61:2164:77:2763:-207.165,0,-153.448	0/1:19:8,11:8:288:11:392:-29.8489,0,-20.3308	0/1:328:171,157:171:6096:157:5614:-405.634,0,-449.255	0/1:147:66,81:66:2364:81:2882:-214.291,0,-168.544	1/1:15:0,15:0:0:15:536:-48.5617,-4.51545,0	0/1:27:16,11:16:561:11:392:-27.4822,0,-42.5303	1/1:243:0,243:0:0:243:8691:-780.193,-73.1503,0	1/1:233:0,232:0:0:232:8304:-744.406,-69.839,0	1/1:9:0,9:0:0:9:320:-29.0659,-2.70927,0	0/1:355:178,177:178:6338:177:6284:-458.477,0,-463.224	1/1:509:2,507:2:72:507:18151:-1621.91,-146.392,0	1/1:99:0,99:0:0:99:3523:-316.464,-29.802,0	1/1:222:0,222:0:0:222:7943:-713.677,-66.8287,0	1/1:369:3,366:3:108:366:13085:-1165.03,-101.144,0	0/1:311:184,127:184:6553:127:4556:-316.025,0,-495.966	1/1:112:0,112:0:0:112:4023:-360.501,-33.7154,0	1/1:242:0,242:0:0:242:8665:-777.159,-72.8493,0	1/1:197:0,197:0:0:197:7028:-631.616,-59.3029,0	1/1:43:0,43:0:0:43:1544:-138.877,-12.9443,0	1/1:236:0,236:0:0:236:8421:-752.712,-71.0431,0	0/1:199:98,101:98:3516:101:3602:-263.257,0,-256.013	1/1:490:0,490:0:0:490:17518:-1571.08,-147.505,0	1/1:529:0,529:0:0:529:18965:-1702.15,-159.245,0	1/1:148:0,148:0:0:148:5282:-473.72,-44.5524,0	1/1:283:3,280:3:108:280:10036:-889.789,-75.1417,0	0/1:43:33,10:33:1179:10:360:-19.7323,0,-93.3955	1/1:384:1,383:1:36:383:13636:-1218.4,-112.002,0	0/1:245:117,128:117:4179:128:4604:-339.315,0,-300.834	1/1:428:0,428:0:0:428:15328:-1373.57,-128.841,0	1/1:225:0,225:0:0:225:8035:-720.864,-67.7318,0	1/1:192:0,192:0:0:192:6883:-618.388,-57.7978,0	0/1:214:96,118:96:3409:118:4180:-310.401,0,-242.195	1/1:356:0,356:0:0:356:12675:-1138.5,-107.167,0	1/1:71:0,71:0:0:71:2544:-228.529,-21.3731,0	0/1:138:69,69:69:2468:69:2475:-180.745,0,-180.116	1/1:212:0,212:0:0:212:7566:-677.863,-63.8184,0	0/1:98:50,48:50:1768:48:1714:-124.423,0,-129.565	0/1:195:100,95:100:3517:95:3407:-247.262,0,-257.52	0/1:179:105,74:105:3719:74:2637:-182.546,0,-280.269	1/1:437:0,437:0:0:437:15627:-1402.78,-131.55,0	1/1:263:0,263:0:0:263:9383:-842.247,-79.1709,0
chr08	4718205	.	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chr08	4720747	.	C	T	162059	PASS	AB=0.477932;ABP=20.932;AC=152;AF=0.808511;AN=188;AO=8103;CIGAR=1X;DP=10336;DPB=10336;DPRA=0;EPP=17598.5;EPPR=4849.74;GTI=1;LEN=1;MEANALT=1.01064;MQM=39.5317;MQMR=53.3884;NS=94;NUMALT=1;ODDS=1.65371;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=290378;QR=79862;RO=2232;RPL=0;RPP=17598.5;RPPR=4849.74;RPR=8103;RUN=1;SAF=8103;SAP=17598.5;SAR=0;SRF=2232;SRP=4849.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1639:-142.614,-13.8474,0	1/1:173:0,173:0:0:173:6220:-538.17,-52.0782,0	0/1:354:172,182:172:6156:182:6520:-454.289,0,-446.524	1/1:330:0,330:0:0:330:11830:-1010.91,-99.3399,0	0/1:102:59,43:59:2116:43:1548:-103.526,0,-159.048	0/1:47:19,28:19:684:28:1008:-72.887,0,-47.6815	1/1:160:1,159:1:36:159:5696:-482.319,-44.5734,0	1/1:199:0,199:0:0:199:7134:-614.303,-59.905,0	1/1:81:0,81:0:0:81:2889:-251.591,-24.3834,0	1/1:63:0,63:0:0:63:2264:-193.882,-18.9649,0	1/1:52:0,52:0:0:52:1860:-158.339,-15.6536,0	1/1:63:0,63:0:0:63:2255:-195.742,-18.9649,0	1/1:44:0,44:0:0:44:1584:-138.332,-13.2453,0	1/1:49:0,49:0:0:49:1746:-150.642,-14.7505,0	1/1:51:0,51:0:0:51:1834:-156.784,-15.3525,0	1/1:55:0,55:0:0:55:1972:-169.54,-16.5567,0	1/1:63:0,63:0:0:63:2260:-195.784,-18.9649,0	1/1:46:0,46:0:0:46:1652:-143.578,-13.8474,0	1/1:46:0,46:0:0:46:1652:-144.297,-13.8474,0	1/1:363:1,362:1:36:362:12963:-1103.46,-105.682,0	1/1:154:0,154:0:0:154:5489:-474.457,-46.3586,0	0/1:144:93,51:93:3332:51:1836:-112.861,0,-255.905	1/1:101:0,101:0:0:101:3610:-305.269,-30.404,0	0/1:126:71,55:71:2540:55:1972:-130.567,0,-190.596	1/1:50:0,50:0:0:50:1796:-155.223,-15.0515,0	0/1:327:157,170:157:5604:170:6100:-422.587,0,-404.184	0/1:243:127,116:127:4564:116:4156:-284.883,0,-336.833	1/1:25:0,25:0:0:25:893:-76.4303,-7.52575,0	1/1:385:0,385:0:0:385:13789:-1176.04,-115.897,0	1/1:142:4,138:4:144:138:4936:-411.538,-29.4515,0	0/1:201:101,99:101:3604:99:3552:-242.688,0,-262.374	0/1:18:6,12:6:212:12:432:-32.303,0,-13.986	1/1:19:0,19:0:0:19:684:-59.441,-5.71957,0	0/1:2:1,1:1:36:1:36:-2.87864,0,-2.99251	1/1:22:0,22:0:0:22:792:-69.3437,-6.62266,0	1/1:19:0,19:0:0:19:684:-59.9459,-5.71957,0	1/1:150:0,150:0:0:150:5378:-457.653,-45.1545,0	0/1:164:84,80:84:3003:80:2864:-195.437,0,-219.661	0/1:63:25,38:25:896:38:1360:-99.7606,0,-61.8108	1/1:4:0,4:0:0:4:144:-12.1172,-1.20412,0	0/1:216:111,105:111:3972:105:3727:-257.404,0,-291.286	0/1:33:19,14:19:684:14:493:-32.2518,0,-51.8806	0/1:153:69,84:69:2476:84:3009:-210.834,0,-176.1	0/1:66:37,29:37:1324:29:1044:-69.9018,0,-99.2351	1/1:47:0,47:0:0:47:1692:-145.419,-14.1484,0	0/1:154:85,69:85:3048:69:2476:-165.63,0,-227.245	0/1:168:83,85:83:2952:85:3049:-214.547,0,-215.058	0/1:208:115,93:115:4108:93:3340:-222.387,0,-306.512	1/1:124:0,124:0:0:124:4453:-380.419,-37.3277,0	1/1:134:0,134:0:0:134:4812:-410.237,-40.338,0	1/1:186:0,186:0:0:186:6644:-565.954,-55.9916,0	0/1:10:7,3:7:252:3:108:-6.57578,0,-19.9748	0/1:146:67,79:67:2404:79:2836:-201.937,0,-172.242	0/1:44:29,15:29:1036:15:540:-33.5679,0,-78.5447	0/1:26:13,13:13:468:13:468:-32.6717,0,-34.5891	0/1:196:102,94:102:3652:94:3364:-231.686,0,-268.791	0/1:64:41,23:41:1456:23:819:-51.2666,0,-111.298	1/1:14:0,14:0:0:14:500:-43.2053,-4.21442,0	0/1:33:13,20:13:468:20:716:-51.058,0,-32.2686	1/1:53:0,53:0:0:53:1900:-162.967,-15.9546,0	1/1:90:3,87:3:108:87:3115:-256.806,-17.0597,0	1/1:13:0,13:0:0:13:463:-38.7575,-3.91339,0	0/1:269:157,112:157:5604:112:4020:-258.769,0,-421.754	1/1:170:1,169:1:36:169:6084:-516.004,-47.5837,0	1/1:64:0,64:0:0:64:2296:-198.135,-19.2659,0	1/1:117:0,117:0:0:117:4192:-357.738,-35.2205,0	1/1:189:6,183:6:216:183:6552:-539.674,-37.2957,0	0/1:75:50,25:50:1780:25:896:-54.7816,0,-137.292	1/1:20:0,20:0:0:20:720:-61.991,-6.0206,0	1/1:60:0,60:0:0:60:2152:-187.112,-18.0618,0	1/1:54:0,54:0:0:54:1932:-164.268,-16.2556,0	1/1:19:0,19:0:0:19:684:-59.0292,-5.71957,0	1/1:103:0,103:0:0:103:3658:-317.449,-31.0061,0	0/1:93:65,28:65:2328:28:1008:-59.6919,0,-181.576	1/1:176:0,176:0:0:176:6312:-540.883,-52.9813,0	1/1:249:0,249:0:0:249:8952:-764.218,-74.9565,0	1/1:202:1,201:1:32:201:7168:-616.729,-57.6102,0	1/1:117:2,115:2:72:115:4120:-352.544,-28.3908,0	0/1:11:7,4:7:252:4:144:-8.87859,0,-19.6939	1/1:157:1,156:1:36:156:5604:-477.422,-43.6685,0	0/1:214:87,127:87:3124:127:4543:-326,0,-216.381	1/1:309:0,309:0:0:309:11061:-943.834,-93.0183,0	1/1:81:1,80:1:36:80:2871:-241.665,-20.7852,0	1/1:44:0,44:0:0:44:1580:-135.074,-13.2453,0	0/1:78:32,46:32:1152:46:1656:-118.983,0,-80.0242	1/1:104:0,104:0:0:104:3736:-318.531,-31.3071,0	1/1:38:0,38:0:0:38:1364:-119.088,-11.4391,0	0/1:52:25,27:25:879:27:968:-68.1254,0,-63.4925	1/1:58:0,58:0:0:58:2088:-181.283,-17.4597,0	0/1:33:20,13:20:716:13:460:-30.3206,0,-54.7441	0/1:49:28,21:28:1004:21:748:-49.4904,0,-75.8021	0/1:55:34,21:34:1224:21:756:-48.5477,0,-93.0939	1/1:74:0,74:0:0:74:2656:-225.817,-22.2762,0	1/1:78:0,78:0:0:78:2800:-239.108,-23.4803,0
chr08	4762735	.	GAC	GAT,TAT	284176	PASS	AB=0.621078,0.374829;ABP=376.352,402.019;AC=153,33;AF=0.822581,0.177419;AN=186;AO=9228,1114;CIGAR=2M1X,1X1M1X;DP=10362;DPB=10363;DPRA=0,0.792774;EPP=20032.7,2422.03;EPPR=3.0103;GTI=5;LEN=1,3;MEANALT=1.65591,2.27273;MQM=59.8002,53.9776;MQMR=60;NS=93;NUMALT=2;ODDS=5.31156;PAIRED=0,0;PAIREDR=0;PAO=0,3;PQA=0,108;PQR=0;PRO=0;QA=329981,39343;QR=72;RO=2;RPL=4870,1110;RPP=64.6963,2387.41;RPPR=7.35324;RPR=4358,4;RUN=1,1;SAF=4869,1110;SAP=64.2153,2387.41;SAR=4359,4;SRF=1;SRP=3.0103;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43,0:0:0:43,0:1533,0:-138.261,-12.9443,0,-138.261,-12.9443,-138.261	1/1:93:0,93,0:0:0:93,0:3316,0:-298.64,-27.9958,0,-298.64,-27.9958,-298.64	1/2:104:0,73,29:0:0:73,29:2622,1028:-296.898,-83.15,-61.1748,-213.743,0,-205.013	1/1:189:0,188,1:0:0:188,1:6715,31:-604.103,-56.5936,0,-601.619,-53.8001,-601.318	1/2:54:0,30,23:0:0:30,23:1076,808:-153.363,-65.5972,-56.5663,-87.82,0,-80.8963	1/2:56:0,29,27:0:0:29,27:1033,959:-162.468,-78.2716,-69.5418,-84.5512,0,-76.4234	1/1:91:0,90,1:0:0:90,1:3230,36:-290.417,-27.0927,0,-287.48,-23.7955,-287.179	1/1:195:0,195,0:0:0:195,0:6928,0:-623.451,-58.7009,0,-623.451,-58.7009,-623.451	1/1:111:0,111,0:0:0:111,0:3992,0:-359.46,-33.4143,0,-359.46,-33.4143,-359.46	1/1:141:0,141,0:0:0:141,0:5054,0:-454.977,-42.4452,0,-454.977,-42.4452,-454.977	1/1:117:0,117,0:0:0:117,0:4186,0:-376.916,-35.2205,0,-376.916,-35.2205,-376.916	1/1:180:0,180,0:0:0:180,0:6435,0:-578.506,-54.1854,0,-578.506,-54.1854,-578.506	1/1:146:0,146,0:0:0:146,0:5204,0:-468.466,-43.9504,0,-468.466,-43.9504,-468.466	1/1:120:0,120,0:0:0:120,0:4289,0:-386.023,-36.1236,0,-386.023,-36.1236,-386.023	1/1:169:0,169,0:0:0:169,0:6049,0:-544.434,-50.8741,0,-544.434,-50.8741,-544.434	1/1:113:1,112,0:1:36:112,0:4020,0:-358.385,-30.4181,0,-358.686,-33.7154,-361.623	1/1:134:0,134,0:0:0:134,0:4804,0:-432.515,-40.338,0,-432.515,-40.338,-432.515	1/1:107:0,104,3:0:0:104,3:3736,108:-336.072,-31.3071,0,-327.285,-22.1604,-326.381	1/1:75:0,74,0:0:0:74,0:2647,0:-238.204,-22.2762,0,-238.204,-22.2762,-238.204	1/1:151:0,151,0:0:0:151,0:5393,0:-485.46,-45.4555,0,-485.46,-45.4555,-485.46	1/1:147:0,147,0:0:0:147,0:5255,0:-473.059,-44.2514,0,-473.059,-44.2514,-473.059	1/2:51:0,29,22:0:0:29,22:1040,776:-148.099,-63.2716,-54.5417,-85.1817,0,-78.559	1/1:109:0,109,0:0:0:109,0:3907,0:-351.818,-32.8123,0,-351.818,-32.8123,-351.818	1/2:49:0,23,26:0:0:23,26:828,923:-142.947,-75.3839,-68.4602,-67.9204,0,-60.0936	1/1:68:0,67,1:0:0:67,1:2386,25:-214.745,-20.169,0,-212.816,-17.9912,-212.515	1/2:227:0,134,92:0:0:134,92:4820,3253:-657.356,-264.106,-223.768,-393.319,0,-365.624	1/2:208:0,135,72:0:0:135,72:4776,2546:-594.7,-205.78,-165.141,-388.912,0,-367.238	1/1:68:0,67,0:0:0:67,0:2396,0:-215.641,-20.169,0,-215.641,-20.169,-215.641	1/1:214:0,214,0:0:0:214,0:7650,0:-688.496,-64.4204,0,-688.496,-64.4204,-688.496	1/1:107:0,106,1:0:0:106,1:3802,28:-342.065,-31.9092,0,-339.847,-29.4113,-339.546	1/2:106:0,47,59:0:0:47,59:1692,2061:-305.844,-167.86,-153.711,-138.339,0,-120.579	1/2:2:0,1,1:0:0:1,1:36,36:-6.22982,-3.29214,-2.99111,-3.29724,0,-2.99621	1/1:17:0,17,0:0:0:17,0:608,0:-55.0428,-5.11751,0,-55.0428,-5.11751,-55.0428	.:.:.:.:.:.:.:.	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:437:0,436,0:0:0:436,0:15591,0:-1402.47,-131.249,0,-1402.47,-131.249,-1402.47	1/2:72:0,52,20:0:0:52,20:1864,703:-209.472,-57.4437,-41.7902,-152.381,0,-146.361	1/2:85:0,56,28:0:0:56,28:2008,1000:-245.003,-81.237,-64.3794,-163.763,0,-155.334	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:135:0,78,57:0:0:78,57:2781,2023:-391.09,-164.415,-140.935,-227.03,0,-209.871	1/2:51:0,26,24:0:0:26,24:931,840:-143.813,-67.8847,-60.0579,-76.0244,0,-68.7997	1/2:76:0,64,12:0:0:64,12:2265,432:-219.894,-35.5404,-16.2745,-184.712,0,-181.1	1/2:106:0,67,39:0:0:67,39:2400,1387:-308.969,-113.239,-93.0696,-196.087,0,-184.347	1/1:160:0,160,0:0:0:160,0:5722,0:-515.082,-48.1648,0,-515.082,-48.1648,-515.082	1/2:87:0,54,33:0:0:54,33:1917,1176:-252.26,-96.073,-79.8174,-156.543,0,-146.609	1/2:82:0,54,28:0:0:54,28:1931,987:-237.573,-80.1394,-63.8838,-157.786,0,-149.358	1/2:95:0,70,25:0:0:70,25:2498,886:-276.122,-72.477,-51.4049,-204,0,-196.474	1/1:126:0,126,0:0:0:126,0:4516,0:-406.598,-37.9298,0,-406.598,-37.9298,-406.598	1/1:170:0,169,1:0:0:169,1:6042,36:-543.517,-50.8741,0,-540.582,-47.5794,-540.281	1/1:102:0,102,0:0:0:102,0:3664,0:-329.959,-30.7051,0,-329.959,-30.7051,-329.959	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:111:0,75,36:0:0:75,36:2688,1284:-323.615,-104.383,-81.806,-219.587,0,-208.75	1/2:35:0,24,11:0:0:24,11:849,389:-101.004,-31.8527,-24.6279,-69.5031,0,-66.1918	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:119:0,84,34:0:0:84,34:2987,1217:-342.626,-99.2079,-73.9214,-243.56,0,-233.325	1/2:33:0,20,13:0:0:20,13:720,443:-94.9926,-36.2347,-30.2141,-59.1058,0,-55.1924	1/1:7:0,7,0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chr08	4782439	.	C	T	20144.9	PASS	AB=0.469287;ABP=24.4856;AC=35;AF=0.18617;AN=188;AO=1244;CIGAR=1X;DP=7209;DPB=7209;DPRA=1.22786;EPP=2686.98;EPPR=12914.6;GTI=0;LEN=1;MEANALT=1.13636;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=2.29589;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44390;QR=210410;RO=5954;RPL=1242;RPP=2686.98;RPPR=12914.6;RPR=2;RUN=1;SAF=1244;SAP=2704.32;SAR=0;SRF=5954;SRP=12932;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/0:146:145,0:145:5117:0:0:0,-43.6493,-460.317	0/1:38:24,13:24:864:13:468:-31.1008,0,-66.7285	0/0:188:188,0:188:6675:0:0:0,-56.5936,-600.831	0/1:62:28,34:28:988:34:1224:-91.8032,0,-70.57	0/1:59:36,23:36:1261:23:828:-57.0833,0,-96.0294	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:91:91,0:91:3230:0:0:0,-27.3937,-290.923	0/0:97:97,0:97:3441:0:0:0,-29.1999,-309.904	0/0:104:103,1:103:3635:1:36:0,-27.7088,-323.758	0/0:62:62,0:62:2177:0:0:0,-18.6639,-196.193	0/0:74:74,0:74:2591:0:0:0,-22.2762,-233.436	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/0:68:68,0:68:2382:0:0:0,-20.47,-214.636	0/0:66:66,0:66:2337:0:0:0,-19.868,-210.588	0/0:54:54,0:54:1915:0:0:0,-16.2556,-172.627	0/0:76:76,0:76:2647:0:0:0,-22.8783,-238.475	0/0:56:55,1:55:1964:1:36:0,-13.2594,-173.437	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:121:121,0:121:4304:0:0:0,-36.4246,-387.54	0/0:117:115,2:115:4033:2:72:0,-28.3838,-356.325	0/1:95:40,55:40:1420:55:1951:-147.267,0,-99.4996	0/0:100:98,0:98:3426:0:0:0,-29.5009,-308.197	0/1:95:66,29:66:2333:29:1027:-64.1443,0,-181.631	0/0:66:66,0:66:2327:0:0:0,-19.868,-209.691	0/1:233:127,106:127:4510:106:3771:-269.45,0,-335.931	0/1:148:70,78:70:2491:78:2774:-205.346,0,-179.891	0/0:36:36,0:36:1261:0:0:0,-10.8371,-113.79	0/0:220:219,1:219:7761:1:36:0,-62.6283,-694.929	0/0:107:103,3:103:3671:3:93:0,-23.4974,-321.931	0/1:87:42,44:42:1496:44:1577:-116.041,0,-108.755	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:225:225,0:225:7903:0:0:0,-67.7317,-711.303	0/1:108:42,66:42:1480:66:2348:-179.068,0,-100.981	0/1:56:26,30:26:900:30:1072:-79.9348,0,-64.4536	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:222:122,99:122:4339:99:3556:-253.508,0,-323.949	0/1:40:26,14:26:913:14:504:-33.6569,0,-70.4428	0/1:92:48,44:48:1694:44:1557:-112.724,0,-125.05	0/1:77:37,39:37:1320:39:1400:-103.207,0,-96.0099	0/0:75:75,0:75:2605:0:0:0,-22.5772,-234.695	0/1:50:30,20:30:1048:20:720:-50.0773,0,-79.5758	0/1:65:45,20:45:1600:20:716:-45.2008,0,-124.723	0/1:82:47,35:47:1671:35:1233:-86.5876,0,-125.992	0/0:93:93,0:93:3309:0:0:0,-27.9958,-298.028	0/0:64:64,0:64:2262:0:0:0,-19.2659,-203.842	0/0:126:126,0:126:4478:0:0:0,-37.9298,-403.192	0/1:9:3,6:3:108:6:207:-16.2576,0,-7.3659	0/1:102:61,41:61:2139:41:1459:-100.9,0,-162.071	0/1:30:23,6:23:815:6:216:-10.7008,0,-64.5813	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:88:53,35:53:1900:35:1260:-87.2148,0,-144.787	0/1:45:32,13:32:1144:13:455:-27.7356,0,-89.7232	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:12:8,4:8:280:4:144:-9.70126,0,-21.9269	0/0:65:65,0:65:2265:0:0:0,-19.5669,-204.11	0/0:91:91,0:91:3205:0:0:0,-27.3937,-288.67	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:167:78,89:78:2791:89:3192:-237.231,0,-201.158	0/0:119:119,0:119:4201:0:0:0,-35.8226,-378.275	0/0:73:72,1:72:2571:1:36:0,-18.3769,-228.041	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/0:130:129,1:129:4563:1:36:0,-35.5356,-407.24	0/1:82:46,36:46:1648:36:1287:-91.4483,0,-123.924	0/0:28:28,0:28:968:0:0:0,-8.42884,-87.4285	0/0:62:62,0:62:2197:0:0:0,-18.6639,-197.994	0/0:62:62,0:62:2179:0:0:0,-18.6639,-196.374	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:39:38,0:38:1334:0:0:0,-11.4391,-119.999	0/1:35:23,12:23:798:12:432:-28.6851,0,-61.6006	0/0:142:142,0:142:5032:0:0:0,-42.7463,-453.029	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.037	0/0:70:70,0:70:2465:0:0:0,-21.0721,-222.104	0/0:87:87,0:87:3054:0:0:0,-26.1896,-275.087	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:73:72,0:72:2572:0:0:0,-21.6742,-231.518	0/1:61:15,46:15:532:46:1656:-130.966,0,-29.8503	0/0:156:153,3:153:5419:3:108:0,-36.8855,-477.768	0/0:85:85,0:85:3010:0:0:0,-25.5875,-271.132	0/0:63:63,0:63:2217:0:0:0,-18.9649,-199.794	0/1:98:54,44:54:1918:44:1568:-111.909,0,-143.395	0/0:160:159,1:159:5517:1:36:0,-44.5665,-493.061	0/0:49:49,0:49:1706:0:0:0,-14.7505,-153.821	0/1:77:45,32:45:1571:32:1139:-79.6391,0,-118.498	0/0:69:69,0:69:2413:0:0:0,-20.7711,-217.424	0/1:38:18,20:18:620:20:701:-51.9726,0,-44.681	0/1:68:36,32:36:1273:32:1119:-80.5449,0,-94.4009	0/1:72:21,51:21:732:51:1836:-143.846,0,-44.5245	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:134:134,0:134:4776:0:0:0,-40.338,-429.997
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chr08	4806215	.	T	G	22997	PASS	AB=0.585409;ABP=145.447;AC=36;AF=0.193548;AN=186;AO=1325;CIGAR=1X;DP=5557;DPB=5557;DPRA=1.15155;EPP=2854.21;EPPR=7471.89;GTI=3;LEN=1;MEANALT=1.06977;MQM=59.9011;MQMR=31.1209;NS=93;NUMALT=1;ODDS=0.83308;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47170;QR=150491;RO=4227;RPL=1322;RPP=2854.21;RPPR=7464.06;RPR=3;RUN=1;SAF=1325;SAP=2880.21;SAR=0;SRF=4226;SRP=9173.14;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:495:0:0:0,-4.21442,-37.4691	0/0:32:32,0:32:1140:0:0:0,-9.63296,-87.7667	0/1:100:26,74:26:936:74:2648:-208.464,0,-38.6364	0/0:139:137,2:137:4885:2:72:0,-35.0064,-350.941	0/1:7:4,3:4:129:3:108:-7.96796,0,-7.84318	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.17457	0/0:30:30,0:30:1071:0:0:0,-9.0309,-78.5311	0/0:34:34,0:34:1220:0:0:0,-10.235,-93.0604	0/0:30:30,0:30:1051:0:0:0,-9.0309,-80.5549	0/0:52:52,0:52:1868:0:0:0,-15.6536,-137.29	0/0:89:89,0:89:3183:0:0:0,-26.7917,-232.59	0/0:77:77,0:77:2687:0:0:0,-23.1793,-204.131	0/0:95:94,0:94:3355:0:0:0,-28.2968,-251.999	0/0:89:89,0:89:3162:0:0:0,-26.7917,-232.06	0/0:65:65,0:65:2315:0:0:0,-19.5669,-169.51	0/0:51:51,0:51:1779:0:0:0,-15.3525,-131.543	0/0:36:36,0:36:1283:0:0:0,-10.8371,-96.9259	0/0:17:17,0:17:612:0:0:0,-5.11751,-45.9704	0/0:31:31,0:31:1104:0:0:0,-9.33193,-83.9733	0/0:55:55,0:55:1958:0:0:0,-16.5566,-142.721	0/0:26:26,0:26:916:0:0:0,-7.82678,-67.3698	0/1:102:14,88:14:500:88:3144:-252.481,0,-3.04348	0/0:39:39,0:39:1396:0:0:0,-11.7402,-99.0877	0/1:29:13,16:13:468:16:576:-43.3148,0,-26.7854	0/0:19:19,0:19:684:0:0:0,-5.71957,-51.8164	0/1:156:90,66:90:3193:66:2351:-164.888,0,-174.836	0/1:137:65,72:65:2301:72:2555:-188.725,0,-129.629	0/0:32:32,0:32:1152:0:0:0,-9.63296,-83.7424	0/0:223:223,0:223:7935:0:0:0,-67.1297,-541.368	0/0:42:41,1:41:1445:1:36:0,-9.04498,-102.008	0/1:60:22,38:22:788:38:1350:-103.738,0,-40.2283	0/1:5:3,2:3:108:2:72:-5.33157,0,-6.69538	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.3836	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.37869	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.66343	0/0:4:4,0:4:140:0:0:0,-1.20412,-10.9044	0/0:185:185,0:185:6542:0:0:0,-55.6905,-453.951	0/1:61:26,35:26:928:35:1256:-94.9825,0,-49.1179	0/1:53:29,24:29:1035:24:840:-59.9629,0,-63.311	0/0:3:3,0:3:104:0:0:0,-0.90309,-8.02037	0/1:44:28,16:28:1000:16:556:-37.1196,0,-58.4556	0/1:40:18,22:18:648:22:788:-59.2036,0,-35.1937	0/1:58:12,46:12:432:46:1644:-130.789,0,-14.2512	0/1:51:23,26:23:797:26:919:-68.0567,0,-43.5323	0/0:66:66,0:66:2342:0:0:0,-19.868,-171.398	0/1:29:18,11:18:640:11:383:-26.0734,0,-35.7225	0/1:98:32,66:32:1152:66:2335:-180.908,0,-56.6428	0/1:141:64,77:64:2267:77:2731:-203.586,0,-124.679	0/0:40:40,0:40:1428:0:0:0,-12.0412,-106.426	0/0:93:93,0:93:3335:0:0:0,-27.9958,-241.745	0/0:34:33,1:33:1163:1:36:0,-6.63674,-79.7198	0/1:7:6,1:6:198:1:36:-1.49107,0,-13.3246	0/1:93:26,67:26:923:67:2382:-186.633,0,-42.1701	0/1:19:6,13:6:216:13:468:-36.7401,0,-9.32954	0/1:10:5,5:5:180:5:176:-13.1747,0,-9.87852	0/1:118:41,77:41:1472:77:2726:-210.056,0,-74.3579	0/1:35:8,27:8:288:27:947:-75.0077,0,-11.4273	0/0:6:6,0:6:216:0:0:0,-1.80618,-15.1269	0/1:12:5,7:5:180:7:252:-19.4166,0,-8.97417	0/0:38:37,0:37:1324:0:0:0,-11.1381,-95.4602	0/0:89:87,1:87:3090:1:34:0,-23.366,-225.993	.:.:.:.:.:.:.:.	0/1:242:116,126:116:4148:126:4498:-332.137,0,-211.869	0/0:58:58,0:58:2062:0:0:0,-17.4597,-151.65	0/0:29:28,1:28:1004:1:36:0,-5.13159,-70.4366	0/0:46:46,0:46:1635:0:0:0,-13.8474,-120.33	0/0:48:46,2:46:1639:2:72:0,-7.61314,-114.362	0/1:37:8,29:8:288:29:1044:-83.1367,0,-10.6867	0/0:49:49,0:49:1760:0:0:0,-14.7505,-128.16	0/0:29:29,0:29:1027:0:0:0,-8.72987,-78.1567	0/0:35:35,0:35:1252:0:0:0,-10.536,-87.0951	0/0:18:18,0:18:639:0:0:0,-5.41854,-48.1929	0/0:55:55,0:55:1942:0:0:0,-16.5566,-148.898	0/1:46:19,27:19:676:27:968:-73.59,0,-38.3629	0/0:76:76,0:76:2696:0:0:0,-22.8783,-197.643	0/0:111:111,0:111:3965:0:0:0,-33.4143,-289.121	0/0:38:38,0:38:1350:0:0:0,-11.4391,-100.852	0/0:93:93,0:93:3331:0:0:0,-27.9958,-251.535	0/1:10:3,7:3:99:7:252:-20.0187,0,-3.26905	0/0:91:91,0:91:3251:0:0:0,-27.3937,-238.893	0/1:108:49,59:49:1751:59:2116:-158.198,0,-99.5969	0/0:51:51,0:51:1824:0:0:0,-15.3525,-133.805	0/0:61:61,0:61:2181:0:0:0,-18.3628,-161.979	0/0:103:103,0:103:3673:0:0:0,-31.0061,-271.351	0/1:42:20,22:20:716:22:780:-57.8796,0,-40.4221	0/0:136:135,1:135:4809:1:36:0,-37.3418,-349.289	0/0:26:26,0:26:932:0:0:0,-7.82678,-68.0597	0/1:73:31,42:31:1093:42:1512:-114.399,0,-61.7042	0/0:80:80,0:80:2872:0:0:0,-24.0824,-215.046	0/1:40:21,19:21:752:19:680:-49.488,0,-43.8444	0/1:109:47,62:47:1664:62:2186:-164.134,0,-88.6269	0/1:68:30,38:30:1071:38:1353:-101.598,0,-58.4809	0/0:83:83,0:83:2941:0:0:0,-24.9855,-214.766	0/0:112:112,0:112:4001:0:0:0,-33.7154,-290.709
chr08	4815259	.	C	T	240591	PASS	AB=0.495244;ABP=3.6713;AC=153;AF=0.81383;AN=188;AO=8601;CIGAR=1X;DP=10316;DPB=10316;DPRA=0;EPP=3.05297;EPPR=4.38915;GTI=2;LEN=1;MEANALT=1;MQM=59.7447;MQMR=59.9399;NS=94;NUMALT=1;ODDS=1.39449;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=306993;QR=60847;RO=1715;RPL=8549;RPP=18230.9;RPPR=3589.41;RPR=52;RUN=1;SAF=4257;SAP=4.92123;SAR=4344;SRF=825;SRP=8.35985;SRR=890;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57:0:0:57:2020:-182.073,-17.1587,0	1/1:139:0,139:0:0:139:4988:-449.004,-41.8432,0	0/1:117:62,55:62:2180:55:1953:-140.723,0,-161.192	1/1:137:1,136:1:36:136:4836:-431.156,-37.6428,0	0/1:100:55,45:55:1947:45:1608:-114.907,0,-145.402	0/1:58:19,39:19:680:39:1400:-108.828,0,-44.0694	1/1:125:0,125:0:0:125:4471:-402.432,-37.6288,0	1/1:109:0,109:0:0:109:3885:-349.82,-32.8123,0	1/1:135:0,135:0:0:135:4840:-435.737,-40.6391,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:141:0,141:0:0:141:5038:-453.556,-42.4452,0	1/1:172:0,172:0:0:172:6124:-551.239,-51.7772,0	1/1:165:1,164:1:36:164:5834:-521.496,-46.0717,0	1/1:147:0,147:0:0:147:5240:-471.709,-44.2514,0	1/1:136:0,136:0:0:136:4861:-437.626,-40.9401,0	1/1:146:0,146:0:0:146:5176:-465.545,-43.9504,0	1/1:147:0,147:0:0:147:5221:-470,-44.2514,0	1/1:151:0,151:0:0:151:5409:-486.852,-45.4555,0	1/1:134:0,134:0:0:134:4778:-430.059,-40.338,0	1/1:177:1,176:1:36:176:6288:-562.408,-49.684,0	1/1:180:2,178:2:72:178:6346:-564.326,-47.3487,0	0/1:32:18,14:18:640:14:496:-35.3404,0,-48.2964	1/1:62:0,62:0:0:62:2208:-198.974,-18.6639,0	0/1:101:48,53:48:1711:53:1892:-140.145,0,-123.871	1/1:57:0,57:0:0:57:2028:-182.737,-17.1587,0	0/1:206:110,96:110:3910:96:3431:-246.99,0,-290.08	0/1:204:99,105:99:3499:105:3752:-276.459,0,-253.711	1/1:77:0,77:0:0:77:2760:-248.49,-23.1793,0	1/1:201:0,201:0:0:201:7187:-646.878,-60.507,0	1/1:106:1,105:1:36:105:3769:-335.793,-28.3109,0	0/1:109:56,53:56:2008:53:1904:-138.818,0,-148.181	0/1:2:1,1:1:36:1:36:-2.99111,0,-2.99621	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:22:0,22:0:0:22:768:-69.4179,-6.62266,0	1/1:7:0,7:0:0:7:233:-21.294,-2.10721,0	1/1:356:4,352:4:144:352:12551:-1115.18,-93.8531,0	0/1:64:37,27:37:1294:27:944:-65.9973,0,-97.4911	0/1:147:81,66:81:2841:66:2355:-167.791,0,-210.739	1/1:14:0,14:0:0:14:487:-44.1592,-4.21442,0	0/1:96:45,51:45:1599:51:1824:-135.526,0,-114.523	0/1:82:41,41:41:1431:41:1476:-108.436,0,-104.398	0/1:114:59,55:59:2096:55:1980:-144.148,0,-154.59	0/1:159:73,86:73:2598:86:3081:-229,0,-186.204	1/1:122:0,122:0:0:122:4332:-389.945,-36.7257,0	0/1:74:42,32:42:1512:32:1118:-78.6492,0,-114.098	0/1:102:47,55:47:1684:55:1943:-144.416,0,-121.142	0/1:105:46,59:46:1633:59:2112:-158.735,0,-115.649	1/1:67:0,67:0:0:67:2393:-215.498,-20.169,0	1/1:99:0,99:0:0:99:3549:-319.613,-29.802,0	1/1:96:0,96:0:0:96:3446:-310.352,-28.8989,0	0/1:7:1,6:1:32:6:216:-17.6794,0,-1.0921	0/1:155:60,95:60:2138:95:3385:-258.121,0,-146.027	0/1:26:8,18:8:288:18:648:-50.8251,0,-18.4406	0/1:22:9,13:9:324:13:460:-35.1127,0,-22.8832	0/1:89:43,46:43:1513:46:1643:-121.296,0,-109.669	0/1:49:21,28:21:747:28:1004:-75.9254,0,-52.8038	1/1:2:0,2:0:0:2:68:-6.45733,-0.60206,0	0/1:11:3,8:3:104:8:288:-22.9561,0,-6.39148	1/1:77:0,77:0:0:77:2753:-247.986,-23.1793,0	1/1:221:0,221:0:0:221:7892:-710.291,-66.5276,0	1/1:10:0,10:0:0:10:341:-31.0083,-3.0103,0	0/1:79:34,45:34:1203:45:1616:-121.948,0,-84.7937	1/1:127:1,126:1:36:126:4497:-401.266,-34.6325,0	1/1:60:0,60:0:0:60:2139:-192.773,-18.0618,0	1/1:59:0,59:0:0:59:2116:-190.706,-17.7608,0	1/1:110:1,109:1:36:109:3866:-344.04,-29.515,0	0/1:111:89,22:89:3156:22:792:-38.1913,0,-250.85	1/1:74:1,73:1:36:73:2616:-232.079,-18.6779,0	1/1:73:0,73:0:0:73:2623:-236.314,-21.9752,0	1/1:211:0,211:0:0:211:7493:-674.409,-63.5173,0	1/1:22:0,22:0:0:22:765:-68.897,-6.62266,0	1/1:61:0,61:0:0:61:2171:-195.33,-18.3628,0	0/1:84:44,40:44:1576:40:1413:-102.171,0,-116.845	1/1:197:0,197:0:0:197:6999:-629.728,-59.3029,0	1/1:111:0,111:0:0:111:3974:-357.847,-33.4143,0	1/1:86:0,86:0:0:86:3079:-277.132,-25.8886,0	1/1:127:0,127:0:0:127:4500:-405.163,-38.2308,0	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:133:0,133:0:0:133:4772:-429.627,-40.037,0	0/1:114:72,42:72:2563:42:1508:-101.662,0,-196.603	1/1:242:0,242:0:0:242:8632:-776.87,-72.8493,0	1/1:199:2,197:2:72:197:7044:-627.167,-53.0682,0	1/1:131:0,131:0:0:131:4679:-421.259,-39.4349,0	0/1:196:93,103:93:3307:103:3665:-271.043,0,-238.848	1/1:285:1,284:1:32:284:10136:-908.922,-82.5942,0	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	0/1:147:53,94:53:1866:94:3367:-258.969,0,-123.959	1/1:170:1,169:1:36:169:6045:-540.48,-47.5768,0	0/1:110:57,53:57:2044:53:1903:-137.307,0,-151.118	0/1:166:88,78:88:3106:78:2800:-202.264,0,-229.798	0/1:112:77,35:77:2721:35:1244:-78.547,0,-211.418	1/1:80:0,80:0:0:80:2868:-258.343,-24.0824,0	1/1:221:0,221:0:0:221:7918:-712.604,-66.5276,0
chr08	4819339	.	C	A	9430.38	PASS	AB=0.411622;ABP=115.086;AC=36;AF=0.191489;AN=188;AO=682;CIGAR=1X;DP=4364;DPB=4364;DPRA=1.06727;EPP=1483.95;EPPR=7970.16;GTI=2;LEN=1;MEANALT=1;MQM=42.1496;MQMR=44.2752;NS=94;NUMALT=1;ODDS=1.4549;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24254;QR=131332;RO=3681;RPL=0;RPP=1483.95;RPPR=7970.16;RPR=682;RUN=1;SAF=0;SAP=1483.95;SAR=682;SRF=0;SRP=7996.2;SRR=3681;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:75:75,0:75:2673:0:0:0,-22.5772,-231.107	0/0:14:14,0:14:500:0:0:0,-4.21442,-44.3955	0/1:64:35,29:35:1260:29:1031:-70.6605,0,-90.3531	0/0:92:92,0:92:3280:0:0:0,-27.6948,-291.199	0/1:37:21,16:21:756:16:566:-36.3919,0,-55.6516	0/1:20:12,8:12:432:8:288:-19.3364,0,-32.2852	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.6792	0/0:70:70,0:70:2484:0:0:0,-21.0721,-217.293	0/0:62:62,0:62:2220:0:0:0,-18.6639,-190.39	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.3898	0/0:27:27,0:27:953:0:0:0,-8.12781,-84.8626	0/0:35:35,0:35:1219:0:0:0,-10.536,-107.161	0/0:26:26,0:26:919:0:0:0,-7.82678,-80.1781	0/0:31:30,0:30:1072:0:0:0,-9.0309,-93.4569	0/0:29:29,0:29:1036:0:0:0,-8.72987,-92.6818	0/0:30:30,0:30:1063:0:0:0,-9.0309,-93.6187	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.2106	0/0:18:18,0:18:644:0:0:0,-5.41854,-57.0717	0/0:11:11,0:11:396:0:0:0,-3.31133,-33.9596	0/0:108:108,0:108:3846:0:0:0,-32.5112,-341.852	0/0:105:105,0:105:3750:0:0:0,-31.6081,-327.505	0/1:98:44,54:44:1580:54:1924:-140.259,0,-110.534	0/0:53:53,0:53:1868:0:0:0,-15.9546,-165.747	0/1:55:34,21:34:1201:21:733:-47.0023,0,-87.3646	0/0:75:75,0:75:2664:0:0:0,-22.5772,-231.375	0/1:135:83,52:83:2976:52:1860:-123.259,0,-222.755	0/1:113:76,37:76:2724:37:1305:-78.2594,0,-201.062	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.0405	0/0:162:162,0:162:5778:0:0:0,-48.7669,-510.422	0/0:51:51,0:51:1809:0:0:0,-15.3525,-159.58	0/1:77:45,32:45:1601:32:1125:-76.4663,0,-119.454	0/1:14:8,6:8:284:6:212:-14.6249,0,-21.1657	0/0:29:29,0:29:1031:0:0:0,-8.72987,-91.1426	0/1:5:2,3:2:72:3:108:-7.84305,0,-5.18477	0/0:21:21,0:21:743:0:0:0,-6.32163,-65.7016	0/0:16:16,0:16:568:0:0:0,-4.81648,-50.4127	0/0:67:67,0:67:2396:0:0:0,-20.169,-212.703	0/1:65:25,40:25:900:40:1421:-102.446,0,-60.0078	0/1:10:7,3:7:248:3:108:-6.73565,0,-19.2003	0/0:10:10,0:10:356:0:0:0,-3.0103,-31.2272	0/1:54:38,16:38:1356:16:568:-33.0804,0,-102.291	0/1:14:9,5:9:320:5:180:-11.7968,0,-24.2984	0/1:143:82,61:82:2944:61:2175:-146.374,0,-212.089	0/1:12:8,4:8:288:4:144:-9.55452,0,-22.4737	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.1301	0/1:47:34,13:34:1224:13:464:-27.0701,0,-95.1109	0/1:50:30,20:30:1068:20:720:-46.1644,0,-78.8835	0/1:94:59,35:59:2115:35:1237:-81.3877,0,-160.576	0/0:63:63,0:63:2264:0:0:0,-18.9649,-201.128	0/0:62:62,0:62:2208:0:0:0,-18.6639,-195.918	0/0:91:91,0:91:3260:0:0:0,-27.3937,-288.539	0/1:10:6,4:6:216:4:144:-10.1566,0,-16.6436	0/1:44:30,14:30:1046:14:500:-30.4416,0,-79.3517	0/1:36:22,14:22:792:14:504:-34.2178,0,-60.0409	0/1:17:11,6:11:392:6:216:-14.0263,0,-29.7706	0/1:33:17,16:17:612:16:572:-40.2351,0,-42.3319	0/1:54:24,30:24:864:30:1061:-77.4956,0,-61.2405	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.2479	0/1:6:3,3:3:108:3:108:-8.12966,0,-8.18089	0/0:47:47,0:47:1688:0:0:0,-14.1484,-145.875	0/0:43:43,0:43:1540:0:0:0,-12.9443,-136.356	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0056	0/1:67:42,25:42:1499:25:887:-58.3773,0,-113.14	0/0:70:70,0:70:2512:0:0:0,-21.0721,-223.847	0/0:60:60,0:60:2143:0:0:0,-18.0618,-186.331	0/0:25:25,0:25:892:0:0:0,-7.52575,-79.6381	0/0:24:23,1:23:805:1:36:0,-3.9257,-68.9528	0/1:54:21,33:21:752:33:1161:-87.05,0,-50.6262	0/0:15:15,0:15:536:0:0:0,-4.51545,-47.3227	0/0:18:18,0:18:629:0:0:0,-5.41854,-54.7675	0/0:29:29,0:29:1031:0:0:0,-8.72987,-91.8006	0/0:21:21,0:21:756:0:0:0,-6.32163,-67.7736	0/0:140:140,0:140:4996:0:0:0,-42.1442,-433.739	0/1:47:34,13:34:1220:13:468:-26.3992,0,-92.1871	0/0:139:139,0:139:4984:0:0:0,-41.8432,-435.031	0/0:57:57,0:57:2037:0:0:0,-17.1587,-181.684	0/0:81:81,0:81:2891:0:0:0,-24.3834,-252.915	0/0:40:40,0:40:1421:0:0:0,-12.0412,-124.775	0/1:22:13,9:13:468:9:324:-21.867,0,-34.9252	0/0:50:50,0:50:1784:0:0:0,-15.0515,-155.192	0/1:63:36,27:36:1296:27:960:-64.269,0,-93.61	0/0:157:156,1:156:5548:1:36:0,-43.9627,-488.288	0/0:22:22,0:22:788:0:0:0,-6.62266,-69.8257	0/0:18:18,0:18:627:0:0:0,-5.41854,-56.3678	0/1:8:5,3:5:176:3:104:-7.20536,0,-13.6761	0/0:37:37,0:37:1307:0:0:0,-11.1381,-115.189	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.0412	0/1:16:13,3:13:468:3:108:-4.92947,0,-36.1199	0/0:29:29,0:29:1035:0:0:0,-8.72987,-91.499	0/1:13:11,2:11:396:2:72:-2.69993,0,-30.1693	0/1:45:26,19:26:911:19:684:-44.7521,0,-67.1595	0/1:10:6,4:6:212:4:140:-9.43409,0,-16.2914	0/0:38:38,0:38:1349:0:0:0,-11.4391,-120.08	0/0:26:26,0:26:924:0:0:0,-7.82678,-82.6656
chr08	4820550	.	A	C	23191	PASS	AB=0.305453;ABP=804.827;AC=38;AF=0.204301;AN=186;AO=1412;CIGAR=1X;DP=9755;DPB=9755;DPRA=0.818079;EPP=3069.13;EPPR=18104.4;GTI=10;LEN=1;MEANALT=1.05128;MQM=59.9582;MQMR=59.7802;NS=93;NUMALT=1;ODDS=0.935159;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49317;QR=294532;RO=8336;RPL=1411;RPP=3060.45;RPPR=18104.4;RPR=1;RUN=1;SAF=1411;SAP=3060.45;SAR=1;SRF=8336;SRP=18104.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1433:0:0:0,-12.3422,-129.134	0/0:240:240,0:240:8498:0:0:0,-72.2472,-763.799	0/1:105:94,11:94:3320:11:379:-2.8324,0,-267.154	0/0:261:261,0:261:9132:0:0:0,-78.5688,-819.913	0/1:64:54,10:54:1912:10:356:-13.1153,0,-153.091	0/1:59:53,6:53:1863:6:216:-2.02974,0,-150.188	0/0:179:179,0:179:6268:0:0:0,-53.8844,-563.451	0/0:286:286,0:286:10128:0:0:0,-86.0946,-907.843	0/0:114:114,0:114:3984:0:0:0,-34.3174,-358.71	0/0:115:114,0:114:4056:0:0:0,-34.3174,-364.828	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.679	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.743	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/0:79:79,0:79:2804:0:0:0,-23.7814,-252.572	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.579	0/0:67:67,0:67:2381:0:0:0,-20.169,-214.546	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.931	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/0:54:54,0:54:1908:0:0:0,-16.2556,-171.297	0/0:247:247,0:247:8714:0:0:0,-74.3544,-784.268	0/0:152:152,0:152:5335:0:0:0,-45.7566,-479.176	0/1:71:51,20:51:1804:20:700:-41.9503,0,-140.984	0/0:156:156,0:156:5529:0:0:0,-46.9607,-496.551	0/1:96:81,15:81:2827:15:512:-17.5028,0,-225.716	0/0:118:118,0:118:4140:0:0:0,-35.5215,-372.627	0/1:191:158,33:158:5592:33:1136:-45.0433,0,-444.807	0/1:108:85,23:85:2996:23:828:-42.3329,0,-237.364	0/0:17:17,0:17:596:0:0:0,-5.11751,-53.9678	0/0:154:154,0:154:5411:0:0:0,-46.3586,-486.792	0/0:176:176,0:176:6256:0:0:0,-52.9813,-562.86	0/1:90:74,16:74:2592:16:524:-20.3765,0,-205.277	1/1:172:10,162:10:356:162:5719:-482.45,-19.3959,0	0/0:24:23,1:23:811:1:36:0,-3.62644,-69.7117	1/1:106:3,103:3:100:103:3615:-316.213,-22.5787,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:183:183,0:183:6503:0:0:0,-55.0885,-585.222	0/1:120:105,15:105:3711:15:536:-12.4512,0,-298.064	0/1:133:24,109:24:848:109:3756:-298.206,0,-36.6027	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/0:85:81,4:81:2857:4:144:0,-12.2739,-244.055	0/1:52:10,42:10:344:42:1390:-109.728,0,-15.6385	0/1:112:97,15:97:3447:15:527:-14.0448,0,-276.659	0/1:40:26,14:26:932:14:476:-31.1198,0,-72.1577	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.357	0/1:99:75,24:75:2644:24:851:-47.1075,0,-208.407	0/1:103:92,11:92:3229:11:379:-1.79356,0,-259.317	0/1:125:113,12:113:4044:12:419:-0.413927,0,-326.518	0/0:137:137,0:137:4856:0:0:0,-41.2411,-437.196	0/0:145:145,0:145:5068:0:0:0,-43.6493,-456.279	0/0:247:246,0:246:8719:0:0:0,-74.0534,-784.162	1/1:76:6,70:6:216:70:2436:-199.703,-3.08777,0	0/1:95:77,18:77:2720:18:644:-29.6927,0,-216.448	0/0:78:73,5:73:2584:5:180:0,-6.92827,-215.661	1/1:192:5,187:5:180:187:6633:-580.503,-41.2457,0	0/1:81:73,8:73:2564:8:273:-0.516753,0,-206.11	0/1:42:29,13:29:1032:13:455:-28.6387,0,-80.5479	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.265	0/1:156:16,140:16:560:140:4958:-399.411,0,-3.76807	0/0:115:115,0:115:4028:0:0:0,-34.6184,-362.717	0/0:92:92,0:92:3268:0:0:0,-27.6948,-294.339	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3804	0/0:87:81,6:81:2847:6:203:0,-7.58843,-237.826	0/0:219:218,1:218:7716:1:36:0,-62.3273,-690.657	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.196	.:.:.:.:.:.:.:.	0/0:210:210,0:210:7396:0:0:0,-63.2163,-665.514	0/1:92:72,20:72:2548:20:686:-34.3635,0,-201.877	0/0:17:16,1:16:576:1:27:0,-2.41773,-49.4752	0/0:120:119,0:119:4190:0:0:0,-35.8226,-376.953	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.631	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:155:155,0:155:5450:0:0:0,-46.6596,-490.639	0/1:36:29,7:29:1012:7:248:-11.8271,0,-80.5542	0/0:204:204,0:204:7175:0:0:0,-61.4101,-645.637	0/0:182:182,0:182:6376:0:0:0,-54.7875,-573.785	0/0:204:204,0:204:7211:0:0:0,-61.4101,-648.413	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	1/1:128:0,127:0:0:127:4440:-399.561,-38.2308,0	0/0:129:129,0:129:4537:0:0:0,-38.8329,-408.504	0/1:52:46,6:46:1644:6:208:-3.40552,0,-132.595	0/0:316:316,0:316:11156:0:0:0,-95.1255,-1003.65	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.877	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.298	0/1:54:42,12:42:1504:12:428:-22.6032,0,-119.399	0/0:119:119,0:119:4252:0:0:0,-35.8226,-381.052	0/0:51:50,0:50:1776:0:0:0,-15.0515,-159.763	0/1:41:33,8:33:1171:8:269:-12.1939,0,-93.3544	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.103	0/1:102:15,87:15:540:87:3016:-240.965,0,-18.2315	0/1:81:53,28:53:1887:28:912:-57.9904,0,-145.724	0/1:39:16,22:16:572:22:766:-57.4982,0,-40.0522	0/0:123:123,0:123:4312:0:0:0,-37.0267,-388.259	0/0:92:91,0:91:3231:0:0:0,-27.3937,-290.653
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chr08	4887837	.	A	C	351004	PASS	AB=0.631518;ABP=786.665;AC=153;AF=0.81383;AN=188;AO=15016;CIGAR=1X;DP=16981;DPB=16981;DPRA=0;EPP=32609.8;EPPR=4263.44;GTI=3;LEN=1;MEANALT=1.03191;MQM=43.9007;MQMR=59.8976;NS=94;NUMALT=1;ODDS=8.26608;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=529193;QR=69711;RO=1962;RPL=7751;RPP=37.1667;RPPR=4202.85;RPR=7265;RUN=1;SAF=7751;SAP=37.1667;SAR=7265;SRF=1955;SRP=4202.85;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:0,64:0:0:64:2260:-185.385,-19.2659,0	1/1:279:0,279:0:0:279:9921:-718.853,-83.9874,0	0/1:213:67,146:67:2372:146:5184:-353.749,0,-149.62	1/1:353:1,352:1:36:352:12412:-958.39,-102.665,0	0/1:127:51,76:51:1809:76:2673:-162.781,0,-124.859	0/1:92:47,45:47:1660:45:1599:-94.909,0,-121.993	1/1:243:0,243:0:0:243:8605:-674.895,-73.1503,0	1/1:269:0,269:0:0:269:9540:-715.505,-80.9771,0	1/1:143:0,143:0:0:143:5032:-410.536,-43.0473,0	1/1:235:1,234:1:36:234:8300:-650.104,-67.1438,0	1/1:132:0,132:0:0:132:4671:-373.522,-39.736,0	1/1:150:0,150:0:0:150:5291:-398.342,-45.1545,0	1/1:158:0,158:0:0:158:5575:-423.408,-47.5627,0	1/1:135:0,135:0:0:135:4742:-352.951,-40.6391,0	1/1:177:1,176:1:36:176:6242:-498.084,-49.684,0	1/1:138:4,134:4:140:134:4703:-349.986,-29.5592,0	1/1:155:0,155:0:0:155:5532:-413.709,-46.6597,0	1/1:117:0,117:0:0:117:4148:-294.143,-35.2205,0	1/1:91:1,90:1:36:90:3220:-227.6,-23.7955,0	1/1:560:5,555:5:172:555:19515:-1569.96,-152.759,0	1/1:281:1,280:1:36:280:9747:-773.815,-80.9912,0	0/1:183:90,93:90:3216:93:3253:-214.949,0,-234.488	1/1:121:0,121:0:0:121:4263:-349.35,-36.4246,0	0/1:183:46,137:46:1621:137:4820:-307.834,0,-91.0883	1/1:182:0,182:0:0:182:6460:-506.905,-54.7875,0	0/1:416:120,296:120:4264:296:10507:-708.265,0,-258.71	0/1:363:113,250:113:4011:250:8780:-581.94,0,-251.908	1/1:75:0,75:0:0:75:2642:-211.468,-22.5773,0	1/1:538:1,537:1:36:537:18875:-1516.26,-158.356,0	1/1:266:2,264:2:72:264:9359:-682.903,-73.2373,0	0/1:188:48,140:48:1699:140:4900:-341.721,0,-96.6017	1/1:10:0,10:0:0:10:356:-29.8555,-3.0103,0	1/1:20:0,20:0:0:20:705:-60.9504,-6.0206,0	0/1:19:14,5:14:500:5:180:-8.57896,0,-39.6166	1/1:9:0,9:0:0:9:315:-21.5586,-2.70927,0	1/1:30:0,30:0:0:30:1052:-88.1804,-9.0309,0	1/1:393:1,392:1:36:392:13778:-1101.53,-114.802,0	0/1:235:111,123:111:3968:123:4299:-271.877,0,-286.355	0/1:105:36,69:36:1292:69:2428:-148.28,0,-84.9756	1/1:8:0,8:0:0:8:284:-23.0575,-2.40824,0	0/1:282:86,196:86:3080:196:6900:-456.559,0,-192.538	0/1:44:24,20:24:864:20:697:-38.7112,0,-64.8372	0/1:185:71,114:71:2519:114:4048:-260.596,0,-171.272	0/1:103:42,61:42:1471:61:2180:-147.123,0,-101.678	1/1:99:1,98:1:32:98:3380:-262.67,-27.0142,0	0/1:132:61,71:61:2158:71:2491:-170.798,0,-154.75	0/1:235:100,135:100:3544:135:4782:-285.699,0,-248.43	0/1:188:61,127:61:2172:127:4472:-289.755,0,-139.153	1/1:192:1,191:1:36:191:6704:-531.049,-54.3433,0	1/1:379:0,379:0:0:379:13350:-1092.45,-114.09,0	1/1:351:0,351:0:0:351:12387:-1013.81,-105.662,0	0/1:15:4,11:4:144:11:387:-29.0831,0,-8.79817	0/1:229:82,147:82:2904:147:5214:-318.05,0,-191.725	0/1:52:18,34:18:636:34:1200:-77.3543,0,-41.9145	0/1:19:2,17:2:72:17:604:-38.204,0,-1.11715	0/1:230:75,155:75:2654:155:5450:-348.384,0,-169.87	0/1:89:32,57:32:1128:57:2009:-135.394,0,-75.0366	1/1:17:0,17:0:0:17:608:-51.1913,-5.11751,0	0/1:18:7,11:7:252:11:396:-23.3063,0,-17.6104	1/1:201:0,201:0:0:201:7030:-573.226,-60.507,0	1/1:243:3,240:3:108:240:8433:-643.619,-63.0761,0	1/1:6:0,6:0:0:6:192:-16.013,-1.80618,0	0/1:256:82,174:82:2919:174:6113:-418.566,0,-185.882	1/1:520:4,516:4:144:516:18117:-1457.82,-143.222,0	1/1:178:0,178:0:0:178:6269:-479.127,-53.5833,0	1/1:224:1,223:1:32:223:7832:-645.474,-64.2314,0	1/1:312:7,305:7:235:305:10721:-847.052,-72.4434,0	0/1:169:88,81:88:3133:81:2815:-169.761,0,-231.321	1/1:66:0,66:0:0:66:2331:-178.946,-19.868,0	1/1:172:0,172:0:0:172:6099:-468.921,-51.7772,0	1/1:187:0,187:0:0:187:6588:-522.745,-56.2926,0	1/1:44:0,44:0:0:44:1576:-122.972,-13.2453,0	1/1:249:0,249:0:0:249:8842:-657.333,-74.9565,0	0/1:109:46,63:46:1640:63:2220:-136.816,0,-115.076	1/1:267:1,266:1:36:266:9316:-717.581,-76.7767,0	1/1:330:1,329:1:27:329:11658:-882.838,-96.6401,0	1/1:259:0,259:0:0:259:9183:-692.102,-77.9668,0	1/1:214:2,212:2:72:212:7515:-532.109,-57.5837,0	0/1:15:10,5:10:352:5:176:-11.6696,0,-27.5027	1/1:251:0,251:0:0:251:8844:-682.027,-75.5585,0	0/1:176:72,104:72:2568:104:3673:-208.911,0,-178.389	1/1:415:0,414:0:0:414:14620:-1138.43,-124.626,0	1/1:204:0,204:0:0:204:7133:-563.159,-61.4101,0	1/1:120:1,118:1:36:118:4123:-328.778,-32.541,0	0/1:127:55,72:55:1960:72:2551:-163.187,0,-138.445	1/1:262:0,262:0:0:262:9128:-719.431,-78.8699,0	1/1:79:0,79:0:0:79:2824:-219.06,-23.7814,0	0/1:112:41,71:41:1460:71:2514:-159.815,0,-97.9807	1/1:148:0,148:0:0:148:5223:-402.503,-44.5524,0	0/1:78:30,48:30:1068:48:1661:-102.16,0,-72.9517	0/1:144:42,102:42:1483:102:3565:-235.54,0,-90.4154	0/1:85:47,38:47:1688:38:1334:-74.256,0,-126.619	1/1:252:1,251:1:36:251:8803:-711.413,-72.2613,0	1/1:192:0,192:0:0:192:6744:-550.618,-57.7978,0
chr08	4895327	.	C	T	13997.9	PASS	AB=0.503876;ABP=3.22913;AC=37;AF=0.198925;AN=186;AO=851;CIGAR=1X;DP=5044;DPB=5044;DPRA=0.827648;EPP=1850.93;EPPR=9101.48;GTI=2;LEN=1;MEANALT=1.05263;MQM=59.8531;MQMR=59.9869;NS=93;NUMALT=1;ODDS=4.543;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30369;QR=149451;RO=4190;RPL=0;RPP=1850.93;RPPR=9101.48;RPR=851;RUN=1;SAF=851;SAP=1850.93;SAR=0;SRF=4190;SRP=9101.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:50:26,24:26:916:24:852:-61.9489,0,-67.705	0/0:107:107,0:107:3811:0:0:0,-32.2102,-343.189	0/1:24:7,17:7:252:17:612:-48.1887,0,-15.8042	0/1:7:2,5:2:72:5:180:-14.422,0,-4.72951	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:37:37,0:37:1302:0:0:0,-11.1381,-117.48	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.513	0/0:33:33,0:33:1162:0:0:0,-9.93399,-104.885	0/0:94:94,0:94:3354:0:0:0,-28.2968,-302.076	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:60:60,0:60:2105:0:0:0,-18.0618,-189.718	0/0:50:50,0:50:1775:0:0:0,-15.0515,-160.032	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.827	0/0:208:208,0:208:7420:0:0:0,-62.6142,-667.846	0/1:36:11,25:11:396:25:900:-70.4839,0,-25.1457	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:33:21,12:21:735:12:428:-28.9248,0,-56.5374	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:93:45,48:45:1604:48:1712:-125.349,0,-116.654	0/1:148:64,84:64:2271:84:2987:-224.498,0,-160.1	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:147:147,0:147:5244:0:0:0,-44.2514,-472.092	0/0:62:58,3:58:2064:3:108:0,-8.53511,-175.983	0/1:48:24,24:24:860:24:860:-63.2724,0,-63.2724	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:177:177,0:177:6340:0:0:0,-53.2823,-570.691	0/1:40:22,18:22:776:18:644:-46.2494,0,-58.121	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	.:.:.:.:.:.:.:.	0/1:67:37,30:37:1324:30:1072:-76.6234,0,-99.2931	0/1:32:17,15:17:608:15:540:-39.3036,0,-45.4191	0/1:42:17,25:17:608:25:896:-68.3171,0,-42.4088	0/1:57:25,32:25:900:32:1142:-85.8732,0,-64.1623	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:48:25,23:25:883:23:816:-59.3041,0,-65.338	0/1:55:24,31:24:856:31:1112:-83.8347,0,-60.8045	0/1:83:51,32:51:1824:32:1144:-78.284,0,-139.456	0/0:76:76,0:76:2697:0:0:0,-22.8783,-242.974	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:51:51,0:51:1804:0:0:0,-15.3525,-162.642	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:50:20,30:20:716:30:1076:-82.0932,0,-49.7162	0/1:25:19,6:19:672:6:212:-11.899,0,-53.2811	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.6223	0/1:90:60,30:60:2140:30:1072:-69.6998,0,-165.775	0/1:17:9,7:9:316:7:248:-17.6197,0,-23.7383	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.724	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:102:52,50:52:1848:50:1788:-130.498,0,-135.895	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.104	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/1:55:24,31:24:856:31:1095:-82.3031,0,-60.8045	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/1:80:43,37:43:1540:37:1306:-93.7486,0,-114.803	0/0:68:68,0:68:2420:0:0:0,-20.47,-218.057	0/0:164:164,0:164:5860:0:0:0,-49.3689,-527.513	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2666	0/0:84:84,0:84:2994:0:0:0,-25.2865,-269.683	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:94:93,1:93:3328:1:36:0,-24.6985,-296.139	0/1:47:21,26:21:748:26:924:-69.3292,0,-53.4969	0/0:101:101,0:101:3611:0:0:0,-30.404,-325.196	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:45:23,22:23:811:22:788:-57.6847,0,-59.7636	0/0:120:120,0:120:4283:0:0:0,-36.1236,-385.648	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:76:37,39:37:1324:39:1380:-101.619,0,-96.5838	0/0:58:57,0:57:2044:0:0:0,-17.1587,-183.872	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	0/1:72:41,31:41:1459:31:1107:-78.266,0,-109.931	0/1:56:21,35:21:748:35:1248:-95.7672,0,-50.7876	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.211	0/0:99:99,0:99:3520:0:0:0,-29.802,-317.012
chr08	4895339	.	C	A	14142.6	PASS	AB=0.506579;ABP=3.63888;AC=37;AF=0.198925;AN=186;AO=855;CIGAR=1X;DP=5016;DPB=5016;DPRA=0.842004;EPP=1850.94;EPPR=8859.11;GTI=2;LEN=1;MEANALT=1;MQM=59.883;MQMR=59.9863;NS=93;NUMALT=1;ODDS=4.52535;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30508;QR=148224;RO=4158;RPL=1;RPP=1850.94;RPPR=8859.11;RPR=854;RUN=1;SAF=855;SAP=1859.62;SAR=0;SRF=4158;SRP=9031.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:40:39,1:39:1400:1:21:0,-9.94125,-124.199	0/1:52:27,25:27:968:25:892:-64.9461,0,-71.7838	0/0:111:111,0:111:3962:0:0:0,-33.4143,-356.771	0/1:24:7,17:7:252:17:608:-47.8273,0,-15.8042	0/1:7:2,5:2:72:5:180:-14.422,0,-4.72951	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/0:60:58,0:58:2043:0:0:0,-17.4597,-183.779	0/0:82:81,1:81:2877:1:36:0,-21.0862,-255.568	0/0:33:33,0:33:1159:0:0:0,-9.93399,-104.616	0/0:91:91,0:91:3247:0:0:0,-27.3937,-292.451	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.55	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:85:84,0:84:2969:0:0:0,-25.2865,-267.084	0/0:204:204,0:204:7273:0:0:0,-61.4101,-654.616	0/1:36:11,25:11:396:25:900:-70.4839,0,-25.1457	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:33:21,12:21:744:12:432:-29.2872,0,-57.3503	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:93:46,47:46:1622:47:1677:-123.219,0,-118.272	0/1:145:62,83:62:2187:83:2976:-224.233,0,-153.447	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:144:144,0:144:5132:0:0:0,-43.3483,-462.018	0/0:62:59,3:59:2104:3:108:0,-8.58869,-179.546	0/1:48:24,24:24:851:24:856:-62.9111,0,-62.46	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:182:182,0:182:6490:0:0:0,-54.7875,-584.187	0/1:37:20,17:20:716:17:612:-44.2753,0,-53.6296	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	.:.:.:.:.:.:.:.	0/1:68:37,31:37:1324:31:1116:-80.2817,0,-98.9921	0/1:32:17,15:17:603:15:540:-39.3036,0,-44.9665	0/1:42:17,25:17:608:25:892:-67.9564,0,-42.4088	0/1:57:25,32:25:892:32:1127:-84.5411,0,-63.441	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/1:45:23,22:23:828:22:788:-57.6903,0,-61.2978	0/1:56:25,31:25:892:31:1116:-83.894,0,-63.742	0/1:83:50,33:50:1796:33:1188:-82.2431,0,-136.937	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:50:21,29:21:756:29:1036:-78.4942,0,-53.3157	0/1:24:19,5:19:663:5:180:-9.32734,0,-52.7687	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.6223	0/1:87:58,29:58:2084:29:1040:-67.7248,0,-161.64	0/1:20:11,9:11:392:9:301:-21.3931,0,-29.5995	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.201	0/0:65:65,0:65:2314:0:0:0,-19.5669,-208.519	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:103:51,52:51:1824:52:1832:-134.152,0,-133.435	0/0:89:89,0:89:3170:0:0:0,-26.7917,-285.524	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:69:69,0:69:2442:0:0:0,-20.7711,-220.035	0/1:56:24,32:24:847:32:1144:-86.4063,0,-59.691	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:64:64,0:64:2271:0:0:0,-19.2659,-204.652	0/1:78:42,36:42:1508:36:1288:-92.7351,0,-112.526	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:165:165,0:165:5877:0:0:0,-49.6699,-529.042	0/0:29:29,0:29:1019:0:0:0,-8.72987,-92.0131	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.588	0/1:16:7,9:7:252:9:312:-23.5975,0,-18.2125	0/0:91:90,1:90:3219:1:32:0,-24.1944,-286.732	0/1:44:19,25:19:676:25:892:-67.3544,0,-47.9227	0/0:100:100,0:100:3563:0:0:0,-30.103,-320.879	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/1:47:24,23:24:856:23:823:-60.231,0,-63.2127	0/0:114:114,0:114:4072:0:0:0,-34.3174,-366.668	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:73:36,37:36:1283:37:1317:-96.8546,0,-93.7974	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	0/1:73:42,31:42:1504:31:1112:-78.4162,0,-113.679	0/1:59:21,38:21:744:38:1342:-103.318,0,-49.5236	0/0:96:96,0:96:3427:0:0:0,-28.8989,-308.644	0/0:101:101,0:101:3595:0:0:0,-30.404,-323.758
chr08	4895388	.	C	T	98299.8	PASS	AB=0.480613;ABP=9.83032;AC=148;AF=0.813187;AN=182;AO=4515;CIGAR=1X;DP=5611;DPB=5611;DPRA=0;EPP=9807.21;EPPR=2380.77;GTI=0;LEN=1;MEANALT=1.01099;MQM=59.5891;MQMR=60;NS=91;NUMALT=1;ODDS=4.01962;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161575;QR=39019;RO=1095;RPL=10;RPP=9720.54;RPPR=2354.79;RPR=4505;RUN=1;SAF=10;SAP=9720.54;SAR=4505;SRF=3;SRP=2354.79;SRR=1092;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:779:-70.4157,-6.62266,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:44:27,17:27:953:17:603:-41.346,0,-72.838	1/1:152:0,152:0:0:152:5432:-488.956,-45.7566,0	0/1:24:7,17:7:252:17:612:-48.1864,0,-15.8042	0/1:41:12,29:12:432:29:1024:-80.1153,0,-26.879	1/1:36:0,36:0:0:36:1296:-116.942,-10.8371,0	1/1:84:0,84:0:0:84:2997:-269.933,-25.2865,0	1/1:66:0,66:0:0:66:2368:-213.337,-19.868,0	1/1:87:0,87:0:0:87:3124:-281.283,-26.1896,0	1/1:49:0,49:0:0:49:1760:-158.653,-14.7505,0	1/1:56:0,56:0:0:56:2012:-181.32,-16.8577,0	1/1:74:0,74:0:0:74:2648:-238.525,-22.2762,0	1/1:57:0,57:0:0:57:2026:-182.599,-17.1587,0	1/1:71:0,71:0:0:71:2552:-229.923,-21.3731,0	1/1:51:0,51:0:0:51:1807:-162.892,-15.3525,0	1/1:33:0,33:0:0:33:1180:-106.489,-9.93399,0	1/1:32:0,32:0:0:32:1148:-103.613,-9.63296,0	1/1:27:0,27:0:0:27:968:-87.4128,-8.12781,0	1/1:53:0,53:0:0:53:1908:-171.96,-15.9546,0	1/1:124:0,124:0:0:124:4452:-400.84,-37.3277,0	0/1:43:30,13:30:1076:13:468:-29.5154,0,-84.2086	1/1:73:3,70:3:108:70:2520:-216.962,-11.9,0	0/1:46:18,28:18:648:28:995:-76.012,0,-44.8045	1/1:29:0,29:0:0:29:1040:-93.8959,-8.72987,0	0/1:183:92,90:92:3295:90:3212:-234.111,0,-241.621	0/1:131:62,69:62:2209:69:2476:-183.64,0,-159.638	1/1:27:0,27:0:0:27:972:-87.7424,-8.12781,0	1/1:130:0,130:0:0:130:4658:-419.342,-39.1339,0	1/1:67:3,64:3:108:64:2300:-197.163,-10.0938,0	0/1:77:41,36:41:1463:36:1288:-93.0443,0,-108.786	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:12:0,12:0:0:12:424:-38.3994,-3.61236,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:162:0,162:0:0:162:5814:-523.347,-48.7669,0	0/1:60:30,30:30:1068:30:1061:-77.7217,0,-78.3703	0/1:37:22,15:22:779:15:531:-36.9293,0,-59.294	.:.:.:.:.:.:.:.	0/1:128:63,65:63:2243:65:2332:-171.585,0,-163.601	0/1:32:17,15:17:604:15:536:-38.9193,0,-45.0576	0/1:41:16,25:16:557:25:870:-66.2692,0,-38.1133	0/1:55:26,29:26:923:29:1040:-77.3554,0,-66.8301	1/1:52:0,52:0:0:52:1855:-167.201,-15.6536,0	0/1:50:26,24:26:921:24:864:-63.0277,0,-68.1537	0/1:52:28,24:28:1000:24:860:-62.0437,0,-74.6618	0/1:71:27,44:27:968:44:1580:-120.412,0,-66.0642	1/1:48:0,48:0:0:48:1728:-155.754,-14.4494,0	1/1:92:0,92:0:0:92:3292:-296.476,-27.6948,0	1/1:65:1,64:1:32:64:2287:-202.888,-16.3676,0	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:35:15,20:15:540:20:720:-54.5845,0,-38.4005	0/1:48:23,25:23:828:25:879:-64.9527,0,-60.3947	.:.:.:.:.:.:.:.	0/1:90:45,45:45:1612:45:1608:-117.907,0,-118.277	0/1:27:8,19:8:288:19:673:-52.768,0,-18.1396	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:6,5:6:216:5:180:-13.2373,0,-16.4792	1/1:58:0,58:0:0:58:2084:-187.801,-17.4597,0	1/1:72:0,72:0:0:72:2564:-231.001,-21.6742,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:231:136,95:136:4858:95:3420:-238.345,0,-367.835	1/1:139:2,137:2:72:137:4883:-432.759,-35.0064,0	1/1:62:0,62:0:0:62:2216:-199.691,-18.6639,0	1/1:48:0,48:0:0:48:1715:-154.625,-14.4494,0	1/1:74:0,74:0:0:74:2656:-239.17,-22.2762,0	0/1:88:60,28:60:2122:28:1007:-64.4538,0,-164.755	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	1/1:31:1,30:1:36:30:1080:-93.9116,-5.73366,0	1/1:25:0,25:0:0:25:888:-80.2381,-7.52575,0	1/1:110:0,110:0:0:110:3908:-351.618,-33.1133,0	0/1:68:37,31:37:1305:31:1099:-78.7494,0,-97.2794	1/1:46:0,46:0:0:46:1652:-148.93,-13.8474,0	1/1:85:0,85:0:0:85:3034:-273.283,-25.5876,0	1/1:30:0,30:0:0:30:1080:-97.5051,-9.0309,0	1/1:116:0,116:0:0:116:4140:-372.769,-34.9195,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:100:1,99:1:36:99:3536:-314.81,-26.5047,0	0/1:55:37,18:37:1324:18:648:-42.087,0,-102.905	1/1:150:0,150:0:0:150:5384:-484.671,-45.1545,0	1/1:37:0,37:0:0:37:1324:-119.457,-11.1381,0	1/1:55:0,55:0:0:55:1972:-177.75,-16.5567,0	0/1:44:25,19:25:870:19:684:-48.6427,0,-65.3692	1/1:118:0,118:0:0:118:4214:-379.435,-35.5215,0	1/1:18:0,18:0:0:18:644:-58.2824,-5.41854,0	0/1:65:29,36:29:1031:36:1283:-96.2057,0,-73.5357	1/1:69:0,69:0:0:69:2484:-223.613,-20.7711,0	0/1:34:14,20:14:504:20:720:-54.8938,0,-35.4631	0/1:89:47,42:47:1662:42:1508:-109.221,0,-123.074	0/1:69:45,24:45:1612:24:864:-57.3115,0,-124.599	1/1:87:0,87:0:0:87:3131:-281.896,-26.1896,0	1/1:97:0,97:0:0:97:3458:-311.028,-29.1999,0
chr08	4895396	.	G	A	97346.5	PASS	AB=0.468962;ABP=20.2641;AC=148;AF=0.813187;AN=182;AO=4377;CIGAR=1X;DP=5483;DPB=5483;DPRA=0;EPP=8942.92;EPPR=2209.04;GTI=0;LEN=1;MEANALT=1;MQM=59.602;MQMR=60;NS=91;NUMALT=1;ODDS=2.98565;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155975;QR=39233;RO=1106;RPL=74;RPP=8875.66;RPPR=2184.13;RPR=4303;RUN=1;SAF=8;SAP=9438.18;SAR=4369;SRF=3;SRP=2378.67;SRR=1103;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:788:-71.2333,-6.62266,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:44:27,17:27:934:17:608:-41.7985,0,-71.1234	1/1:147:0,147:0:0:147:5215:-469.419,-44.2514,0	0/1:24:8,16:8:279:16:572:-44.5878,0,-18.2228	0/1:40:12,28:12:432:28:991:-77.452,0,-27.18	1/1:35:0,35:0:0:35:1252:-112.983,-10.5361,0	1/1:76:0,76:0:0:76:2703:-243.501,-22.8783,0	1/1:66:0,66:0:0:66:2354:-212.084,-19.868,0	1/1:84:0,84:0:0:84:2984:-268.772,-25.2865,0	1/1:47:0,47:0:0:47:1667:-150.286,-14.1484,0	1/1:55:0,55:0:0:55:1949:-175.66,-16.5567,0	1/1:70:0,70:0:0:70:2492:-224.492,-21.0721,0	1/1:56:0,56:0:0:56:1965:-177.109,-16.8577,0	1/1:71:0,71:0:0:71:2531:-228.034,-21.3731,0	1/1:49:0,49:0:0:49:1742:-157.045,-14.7505,0	1/1:32:0,32:0:0:32:1127:-101.719,-9.63296,0	1/1:32:0,32:0:0:32:1131:-102.081,-9.63296,0	1/1:23:0,23:0:0:23:812:-73.3909,-6.92369,0	1/1:53:0,53:0:0:53:1895:-170.787,-15.9546,0	1/1:122:0,122:0:0:122:4355:-392.116,-36.7257,0	0/1:45:32,13:32:1135:13:456:-27.8269,0,-88.9117	1/1:69:2,67:2:72:67:2408:-210.126,-13.9343,0	0/1:47:19,28:19:665:28:1004:-76.5275,0,-46.0244	1/1:29:0,29:0:0:29:1040:-93.8959,-8.72987,0	0/1:177:91,86:91:3252:86:3036:-220.141,0,-239.619	0/1:130:63,67:63:2260:67:2388:-176.027,0,-164.529	1/1:27:0,27:0:0:27:954:-86.1392,-8.12781,0	1/1:128:0,128:0:0:128:4580:-412.223,-38.5318,0	1/1:66:3,63:3:104:63:2248:-192.858,-10.1652,0	0/1:78:43,35:43:1536:35:1252:-89.5047,0,-115.053	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:12:0,12:0:0:12:423:-38.3659,-3.61236,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:155:0,155:0:0:155:5551:-499.69,-46.6597,0	0/1:58:30,28:30:1047:28:995:-72.3861,0,-77.0767	0/1:38:23,15:23:807:15:536:-36.9201,0,-61.51	.:.:.:.:.:.:.:.	0/1:127:63,64:63:2243:64:2287:-167.837,0,-163.902	0/1:32:17,15:17:612:15:540:-39.2811,0,-45.7805	0/1:39:16,23:16:567:23:828:-63.1039,0,-39.6206	0/1:56:28,28:28:995:28:1008:-74.1763,0,-73.0063	1/1:52:0,52:0:0:52:1818:-163.874,-15.6536,0	0/1:49:26,23:26:900:23:824:-59.7295,0,-66.5608	0/1:52:29,23:29:1021:23:828:-59.166,0,-76.5467	0/1:66:28,38:28:1004:38:1341:-101.084,0,-70.8079	1/1:46:0,46:0:0:46:1652:-148.917,-13.8474,0	1/1:91:0,91:0:0:91:3252:-292.876,-27.3937,0	1/1:62:1,61:1:36:61:2196:-194.307,-15.0656,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:34:15,19:15:531:19:676:-50.9248,0,-37.8869	0/1:47:24,23:24:823:23:824:-60.3254,0,-60.2332	.:.:.:.:.:.:.:.	0/1:92:45,47:45:1587:47:1677:-123.51,0,-115.422	0/1:26:8,18:8:284:18:636:-49.7413,0,-18.0766	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:6,5:6:212:5:180:-13.2373,0,-16.1135	1/1:57:0,57:0:0:57:2020:-182.044,-17.1587,0	1/1:72:1,71:1:36:71:2537:-224.974,-18.0759,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:229:136,93:136:4849:93:3327:-230.582,0,-367.628	1/1:140:3,137:3:93:137:4888:-431.305,-33.4675,0	1/1:58:0,58:0:0:58:2070:-186.559,-17.4597,0	1/1:44:0,44:0:0:44:1576:-142.121,-13.2453,0	1/1:72:0,72:0:0:72:2576:-231.965,-21.6742,0	0/1:85:61,24:61:2180:24:863:-52.4031,0,-170.879	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	1/1:30:0,30:0:0:30:1072:-96.7891,-9.0309,0	1/1:24:0,24:0:0:24:855:-77.2702,-7.22472,0	1/1:106:0,106:0:0:106:3773:-339.703,-31.9092,0	0/1:65:36,29:36:1296:29:1031:-73.5357,0,-97.377	1/1:43:0,43:0:0:43:1525:-137.52,-12.9443,0	1/1:84:0,84:0:0:84:3007:-270.851,-25.2865,0	1/1:26:0,26:0:0:26:927:-83.7417,-7.82678,0	1/1:114:0,114:0:0:114:4096:-368.808,-34.3174,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:98:1,97:1:36:97:3471:-308.965,-25.9027,0	0/1:54:36,18:36:1296:18:640:-41.6655,0,-100.688	1/1:145:0,145:0:0:145:5192:-467.382,-43.6494,0	1/1:36:0,36:0:0:36:1278:-115.317,-10.8371,0	1/1:54:0,54:0:0:54:1913:-172.444,-16.2556,0	0/1:42:25,17:25:840:17:608:-42.4064,0,-63.2623	1/1:115:0,115:0:0:115:4082:-367.562,-34.6185,0	1/1:19:0,19:0:0:19:667:-60.3464,-5.71957,0	0/1:64:29,35:29:1023:35:1248:-93.3589,0,-73.1158	1/1:66:0,66:0:0:66:2359:-212.368,-19.868,0	0/1:34:14,20:14:504:20:707:-53.7196,0,-35.4631	0/1:88:47,41:47:1667:41:1446:-103.943,0,-123.826	0/1:69:45,24:45:1607:24:849:-55.9568,0,-124.148	1/1:84:0,84:0:0:84:2989:-269.128,-25.2865,0	1/1:95:0,95:0:0:95:3361:-302.45,-28.5979,0
chr08	4975026	.	C	T	155378	PASS	AB=0.509231;ABP=5.2153;AC=153;AF=0.81383;AN=188;AO=7139;CIGAR=1X;DP=8619;DPB=8619;DPRA=0;EPP=15505.2;EPPR=3212.45;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.6053;MQMR=59.9391;NS=94;NUMALT=1;ODDS=6.79512;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255201;QR=52762;RO=1478;RPL=7139;RPP=15505.2;RPPR=3212.45;RPR=0;RUN=1;SAF=0;SAP=15505.2;SAR=7139;SRF=0;SRP=3212.45;SRR=1478;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:676:-61.1598,-5.71957,0	1/1:149:1,148:1:36:148:5324:-474.754,-41.2552,0	0/1:87:21,66:21:752:66:2364:-186.748,0,-41.8166	1/1:219:0,219:0:0:219:7798:-701.769,-65.9256,0	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:13:8,5:8:288:5:180:-12.6304,0,-22.354	1/1:109:1,108:1:36:108:3872:-345.064,-29.214,0	1/1:131:0,131:0:0:131:4700:-423.093,-39.4349,0	1/1:97:0,97:0:0:97:3476:-312.524,-29.1999,0	1/1:138:1,137:1:36:137:4881:-435.702,-37.9439,0	1/1:61:0,61:0:0:61:2181:-196.539,-18.3628,0	1/1:111:0,111:0:0:111:3984:-357.882,-33.4143,0	1/1:99:0,99:0:0:99:3545:-319.227,-29.802,0	1/1:74:0,74:0:0:74:2648:-238.553,-22.2762,0	1/1:98:0,98:0:0:98:3516:-316.632,-29.5009,0	1/1:75:0,75:0:0:75:2696:-242.87,-22.5773,0	1/1:75:0,75:0:0:75:2696:-242.867,-22.5773,0	1/1:88:0,88:0:0:88:3164:-284.889,-26.4906,0	1/1:43:0,43:0:0:43:1544:-139.22,-12.9443,0	1/1:188:0,188:0:0:188:6686:-601.807,-56.5936,0	1/1:130:0,130:0:0:130:4624:-416.236,-39.1339,0	0/1:28:17,11:17:604:11:384:-26.4649,0,-46.2618	1/1:69:0,69:0:0:69:2476:-222.392,-20.7711,0	0/1:103:39,64:39:1385:64:2288:-175.169,0,-93.9408	1/1:43:0,43:0:0:43:1529:-137.892,-12.9443,0	0/1:283:135,148:135:4848:148:5276:-389.775,0,-351.281	0/1:215:97,118:97:3484:118:4232:-315.526,0,-249.049	1/1:62:0,62:0:0:62:2194:-197.709,-18.6639,0	1/1:198:0,198:0:0:198:7046:-634.201,-59.6039,0	1/1:100:1,99:1:36:99:3509:-311.021,-26.5047,0	0/1:152:95,57:95:3408:57:2036:-137.753,0,-261.177	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	1/1:12:0,12:0:0:12:432:-39.2166,-3.61236,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:186:-17.0436,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7822,-1.80618,0	1/1:252:0,252:0:0:252:9036:-813.208,-75.8596,0	0/1:126:65,61:65:2321:61:2196:-159.711,0,-171.219	0/1:81:60,21:60:2152:21:752:-43.6228,0,-169.564	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:122:53,69:53:1900:69:2461:-184.973,0,-134.552	0/1:37:21,16:21:741:16:576:-41.0369,0,-55.8735	0/1:74:26,48:26:932:48:1716:-132.44,0,-61.9226	0/1:122:63,59:63:2256:59:2124:-154.693,0,-165.95	1/1:98:0,98:0:0:98:3520:-316.997,-29.5009,0	0/1:63:25,38:25:873:38:1356:-103.375,0,-59.9196	0/1:81:30,51:30:1061:51:1828:-140.078,0,-71.4159	0/1:163:73,90:73:2612:90:3193:-237.881,0,-186.258	1/1:91:0,91:0:0:91:3248:-292.488,-27.3937,0	1/1:166:0,166:0:0:166:5917:-532.606,-49.971,0	1/1:137:0,137:0:0:137:4882:-439.439,-41.2411,0	0/1:9:1,8:1:36:8:284:-23.1036,0,-0.889005	0/1:56:17,39:17:608:39:1389:-108.447,0,-38.1943	0/1:44:31,13:31:1116:13:468:-29.2143,0,-87.5064	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:111:56,55:56:1993:55:1949:-141.933,0,-146.223	0/1:56:34,22:34:1216:22:788:-54.3871,0,-92.8889	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:12:5,7:5:180:7:248:-19.0515,0,-12.9397	1/1:70:0,70:0:0:70:2501:-225.34,-21.0721,0	1/1:106:0,106:0:0:106:3804:-342.543,-31.9092,0	1/1:8:0,8:0:0:8:288:-26.1362,-2.40824,0	0/1:197:99,98:99:3540:98:3508:-256.623,0,-259.506	1/1:180:0,180:0:0:180:6429:-577.895,-54.1854,0	1/1:53:0,53:0:0:53:1896:-170.909,-15.9546,0	1/1:106:0,105:0:0:105:3726:-335.094,-31.6082,0	1/1:171:10,161:10:360:161:5760:-485.727,-18.7318,0	0/1:47:23,24:23:809:24:864:-63.9342,0,-58.909	1/1:26:0,26:0:0:26:936:-84.5364,-7.82678,0	1/1:70:0,70:0:0:70:2511:-226.203,-21.0721,0	1/1:86:0,86:0:0:86:3077:-277.153,-25.8886,0	1/1:16:0,16:0:0:16:568:-51.4453,-4.81648,0	1/1:52:0,52:0:0:52:1856:-167.275,-15.6536,0	0/1:65:27,38:27:968:38:1349:-102.072,0,-67.8704	1/1:139:0,139:0:0:139:4976:-447.804,-41.8432,0	1/1:173:0,173:0:0:173:6177:-555.996,-52.0782,0	1/1:39:0,39:0:0:39:1404:-126.467,-11.7402,0	1/1:123:1,122:1:36:122:4384:-391.02,-33.4284,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:101:1,100:1:36:100:3569:-317.738,-26.8058,0	0/1:88:56,32:56:1974:32:1140:-76.4048,0,-151.441	1/1:169:0,169:0:0:169:6029:-542.425,-50.8741,0	1/1:130:0,130:0:0:130:4653:-418.888,-39.1339,0	1/1:94:0,94:0:0:94:3380:-304.399,-28.2968,0	0/1:152:74,78:74:2633:78:2792:-205.585,0,-191.457	1/1:224:0,224:0:0:224:8039:-723.276,-67.4307,0	1/1:61:0,60:0:0:60:2133:-191.823,-18.0618,0	0/1:115:64,51:64:2258:51:1791:-126.84,0,-168.862	1/1:83:0,83:0:0:83:2968:-267.316,-24.9855,0	0/1:35:12,23:12:432:23:828:-64.0418,0,-28.6851	0/1:79:34,45:34:1224:45:1612:-121.579,0,-86.6857	0/1:122:84,38:84:2974:38:1368:-86.6928,0,-231.165	1/1:79:0,79:0:0:79:2819:-253.946,-23.7814,0	1/1:131:0,131:0:0:131:4696:-422.783,-39.4349,0
chr08	5029166	.	G	A	90447.9	PASS	AB=0.477193;ABP=12.0238;AC=150;AF=0.806452;AN=186;AO=4205;CIGAR=1X;DP=5255;DPB=5255;DPRA=57.1087;EPP=9134.05;EPPR=2283.06;GTI=2;LEN=1;MEANALT=1;MQM=59.8809;MQMR=59.9933;NS=93;NUMALT=1;ODDS=0.363438;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149893;QR=37335;RO=1050;RPL=4205;RPP=9134.05;RPPR=2283.06;RPR=0;RUN=1;SAF=4205;SAP=9134.05;SAR=0;SRF=1050;SRP=2283.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:810:-73.2199,-6.92369,0	1/1:61:0,61:0:0:61:2163:-194.937,-18.3628,0	0/1:105:46,59:46:1632:59:2107:-158.29,0,-115.561	1/1:130:0,130:0:0:130:4657:-419.289,-39.1339,0	0/1:26:16,10:16:560:10:360:-24.9175,0,-42.902	0/1:12:2,10:2:57:10:360:-29.1319,0,-1.80095	1/1:59:0,59:0:0:59:2116:-190.663,-17.7608,0	1/1:100:0,100:0:0:100:3567:-321.225,-30.103,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:66:0,66:0:0:66:2366:-213.189,-19.868,0	1/1:50:0,50:0:0:50:1800:-162.281,-15.0515,0	1/1:59:0,59:0:0:59:2053:-185.038,-17.7608,0	1/1:53:0,53:0:0:53:1874:-168.933,-15.9546,0	1/1:69:0,69:0:0:69:2452:-220.929,-20.7711,0	1/1:46:0,46:0:0:46:1637:-147.616,-13.8474,0	1/1:47:1,46:1:36:46:1648:-145.01,-10.5501,0	1/1:62:0,62:0:0:62:2207:-198.894,-18.6639,0	1/1:53:0,53:0:0:53:1892:-170.548,-15.9546,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:98:0,98:0:0:98:3495:-314.759,-29.5009,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:105:68,37:68:2420:37:1324:-87.8518,0,-186.448	1/1:23:0,23:0:0:23:828:-74.8371,-6.92369,0	0/1:76:39,37:39:1404:37:1312:-95.5034,0,-103.781	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	0/1:170:69,101:69:2442:101:3595:-272.57,0,-168.86	0/1:100:67,33:67:2394:33:1184:-76.7204,0,-185.613	1/1:29:0,29:0:0:29:1023:-92.33,-8.72987,0	1/1:174:0,174:0:0:174:6200:-558.042,-52.3792,0	1/1:66:1,65:1:36:65:2324:-205.82,-16.2697,0	0/1:46:25,21:25:883:21:736:-52.7124,0,-65.9401	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:198:-18.1424,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:129:0,129:0:0:129:4616:-415.602,-38.8329,0	0/1:84:39,45:39:1391:45:1605:-119.407,0,-100.202	0/1:41:16,25:16:563:25:892:-68.2575,0,-38.6569	.:.:.:.:.:.:.:.	0/1:77:35,42:35:1244:42:1493:-111.483,0,-89.0854	0/1:33:15,18:15:536:18:648:-48.7179,0,-38.6408	0/1:60:31,29:31:1108:29:1031:-75.0408,0,-81.9692	0/1:41:25,16:25:869:16:576:-39.8319,0,-66.1814	1/1:51:0,51:0:0:51:1794:-161.71,-15.3525,0	0/1:67:32,35:32:1152:35:1248:-92.3488,0,-83.8211	0/1:59:28,31:28:996:31:1107:-82.1768,0,-72.1941	0/1:116:63,53:63:2248:53:1896:-135.962,0,-167.664	1/1:109:0,109:0:0:109:3880:-349.39,-32.8123,0	1/1:42:0,42:0:0:42:1508:-136.013,-12.6433,0	1/1:139:0,139:0:0:139:4952:-445.821,-41.8432,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:80:44,36:44:1576:36:1288:-92.1412,0,-118.049	0/1:26:8,18:8:288:18:629:-49.107,0,-18.4406	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:55:35,20:35:1239:20:720:-48.5721,0,-95.257	0/1:77:45,32:45:1589:32:1152:-80.8104,0,-120.119	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	1/1:29:0,29:0:0:29:1028:-92.8308,-8.72987,0	1/1:92:1,91:1:36:91:3239:-288.128,-24.0965,0	1/1:2:0,2:0:0:2:72:-6.8363,-0.60206,0	0/1:112:71,41:71:2531:41:1464:-98.3398,0,-194.326	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:41:1,40:1:36:40:1424:-124.823,-8.74396,0	1/1:91:0,91:0:0:91:3241:-291.909,-27.3937,0	0/1:47:34,13:34:1212:13:468:-28.3112,0,-95.2364	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:59:0,59:0:0:59:2073:-186.836,-17.7608,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:43:28,15:28:1000:15:540:-35.9922,0,-77.3711	1/1:44:0,44:0:0:44:1556:-140.332,-13.2453,0	1/1:81:0,81:0:0:81:2892:-260.514,-24.3834,0	1/1:41:0,41:0:0:41:1451:-130.885,-12.3422,0	1/1:36:1,35:1:36:35:1248:-109.016,-7.23881,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:51:0,51:0:0:51:1820:-163.591,-15.3525,0	0/1:68:39,29:39:1392:29:1032:-72.7234,0,-105.109	1/1:145:0,145:0:0:145:5171:-465.531,-43.6494,0	1/1:81:0,81:0:0:81:2861:-257.726,-24.3834,0	1/1:63:0,63:0:0:63:2235:-201.413,-18.9649,0	0/1:72:29,43:29:1031:43:1532:-116.499,0,-71.4285	1/1:98:1,97:1:36:97:3460:-308.014,-25.9027,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	0/1:40:17,23:17:595:23:824:-62.4421,0,-41.8355	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	0/1:24:6,18:6:216:18:640:-50.7046,0,-12.5658	0/1:48:23,25:23:803:25:900:-66.8716,0,-58.1389	0/1:51:34,17:34:1208:17:612:-40.0593,0,-93.6736	1/1:42:0,42:0:0:42:1504:-135.609,-12.6433,0	1/1:69:0,69:0:0:69:2464:-222.013,-20.7711,0
chr08	5029310	.	A	T	21279.2	PASS	AB=0.51145;ABP=5.84482;AC=36;AF=0.193548;AN=186;AO=1290;CIGAR=1X;DP=6668;DPB=6668;DPRA=1.00775;EPP=2804.21;EPPR=11674.7;GTI=1;LEN=1;MEANALT=1.05263;MQM=59.8085;MQMR=59.9498;NS=93;NUMALT=1;ODDS=1.79434;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45591;QR=192715;RO=5375;RPL=1290;RPP=2804.21;RPPR=11674.7;RPR=0;RUN=1;SAF=0;SAP=2804.21;SAR=1290;SRF=0;SRP=11674.7;SRR=5375;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/1:88:56,32:56:2012:32:1144:-76.7789,0,-154.854	0/0:148:148,0:148:5300:0:0:0,-44.5524,-477.12	0/1:38:24,14:24:856:14:504:-34.259,0,-65.922	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.739	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.727	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.006	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:179:178,0:178:6389:0:0:0,-53.5833,-574.626	0/0:68:68,0:68:2386:0:0:0,-20.47,-214.996	0/1:127:43,84:43:1544:84:3012:-233.075,0,-101.022	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:74:39,35:39:1384:35:1256:-91.0691,0,-102.583	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.539	0/1:214:109,105:109:3916:105:3761:-274.235,0,-288.211	0/1:128:47,81:47:1688:81:2880:-220.905,0,-113.675	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:251:251,0:251:8993:0:0:0,-75.5585,-809.302	0/0:79:78,1:78:2808:1:36:0,-20.1831,-249.36	0/1:29:17,12:17:608:12:428:-30.1289,0,-46.3222	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/1:136:81,55:81:2904:55:1911:-131.322,0,-220.655	0/1:50:30,20:30:1080:20:701:-48.3602,0,-82.4618	.:.:.:.:.:.:.:.	0/1:124:57,67:57:2044:67:2342:-173.692,0,-146.904	0/1:45:20,25:20:712:25:873:-65.3382,0,-50.8603	0/1:59:33,26:33:1184:26:913:-64.7232,0,-89.1066	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:63:20,43:20:720:43:1525:-118.572,0,-46.1639	0/1:92:50,42:50:1796:42:1483:-106.032,0,-134.207	0/1:120:69,51:69:2476:51:1809:-126.921,0,-186.97	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.132	0/0:124:124,0:124:4456:0:0:0,-37.3277,-400.781	0/0:163:163,0:163:5856:0:0:0,-49.0679,-527.148	1/1:14:1,13:1:36:13:453:-37.5004,-0.616145,0	0/1:189:77,112:77:2760:112:3966:-299.298,0,-191.746	0/1:25:9,16:9:324:16:572:-44.2877,0,-21.9801	0/1:31:18,13:18:644:13:449:-31.4056,0,-48.9587	0/1:106:59,47:59:2093:47:1654:-116.744,0,-156.729	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:24:8,16:8:288:16:576:-44.893,0,-19.0427	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:159:99,60:99:3548:60:2137:-144.731,0,-271.664	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.841	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:53:17,36:17:612:36:1277:-99.2123,0,-39.4588	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.687	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:30:20,10:20:720:10:341:-21.9303,0,-56.0979	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/0:153:153,0:153:5492:0:0:0,-46.0576,-494.405	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.203	0/0:57:56,1:56:2012:1:36:0,-13.5604,-177.737	0/1:5:1,4:1:36:4:117:-9.31539,0,-2.09312	0/0:87:87,0:87:3120:0:0:0,-26.1896,-280.972	0/1:103:49,54:49:1764:54:1913:-141.439,0,-128.038	0/0:160:160,0:160:5728:0:0:0,-48.1648,-515.623	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:60:31,29:31:1108:29:1021:-74.1385,0,-81.9692	0/0:98:95,2:95:3408:2:68:0,-23.0954,-300.47	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:50:27,23:27:953:23:824:-59.4318,0,-71.0318	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:67:34,33:34:1220:33:1138:-82.496,0,-89.9378	0/1:108:35,72:35:1256:72:2520:-194.467,0,-80.7743	0/1:45:9,36:9:320:36:1235:-97.8989,0,-15.596	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801
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chr08	5037378	.	G	A	25247.7	PASS	AB=0.57931;ABP=137.687;AC=36;AF=0.191489;AN=188;AO=1430;CIGAR=1X;DP=6671;DPB=6671;DPRA=0.95551;EPP=3108.22;EPPR=11383.7;GTI=1;LEN=1;MEANALT=1;MQM=59.8126;MQMR=59.9712;NS=94;NUMALT=1;ODDS=0.477767;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51273;QR=187832;RO=5241;RPL=1430;RPP=3108.22;RPPR=11383.7;RPR=0;RUN=1;SAF=0;SAP=3108.22;SAR=1430;SRF=0;SRP=11383.7;SRR=5241;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:83:83,0:83:2988:0:0:0,-24.9855,-268.834	0/1:68:22,46:22:788:46:1652:-128.498,0,-50.7748	0/0:141:141,0:141:5040:0:0:0,-42.4452,-453.747	0/1:47:19,28:19:672:28:1004:-76.5275,0,-46.6584	0/1:35:22,13:22:784:13:468:-31.9236,0,-60.3479	0/0:96:96,0:96:3420:0:0:0,-28.8989,-308.015	0/0:104:103,1:103:3688:1:36:0,-27.7088,-328.514	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.41	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.518	0/0:103:103,0:103:3708:0:0:0,-31.0061,-333.92	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.109	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.571	0/0:114:114,0:114:4072:0:0:0,-34.3174,-366.668	0/1:48:22,26:22:792:26:932:-69.7494,0,-57.1562	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:97:45,52:45:1612:52:1863:-138.744,0,-116.17	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:208:68,140:68:2432:140:5011:-388.509,0,-156.521	0/1:111:35,76:35:1260:76:2727:-212.177,0,-80.2912	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.959	0/0:167:167,0:167:6000:0:0:0,-50.272,-540.103	0/0:55:54,1:54:1940:1:36:0,-12.9601,-171.28	0/1:88:35,53:35:1252:53:1904:-145.139,0,-86.4944	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:181:181,0:181:6512:0:0:0,-54.4864,-586.157	0/1:73:20,53:20:720:53:1900:-149.303,0,-43.1536	0/1:89:44,45:44:1584:45:1604:-117.851,0,-116.06	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:103:41,62:41:1460:62:2228:-169.778,0,-100.69	0/1:57:33,24:33:1188:24:864:-60.9223,0,-90.0699	0/1:86:48,38:48:1716:38:1364:-97.1675,0,-128.837	0/1:69:36,33:36:1296:33:1188:-86.4528,0,-96.1729	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:49:22,27:22:788:27:968:-72.6298,0,-56.4943	0/1:90:27,63:27:960:63:2251:-175.757,0,-59.6236	0/1:105:39,66:39:1392:66:2355:-180.484,0,-93.9709	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.939	0/0:111:111,0:111:3964:0:0:0,-33.4143,-356.582	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:103:62,41:62:2228:41:1472:-101.77,0,-169.778	0/1:26:13,13:13:464:13:468:-34.6325,0,-34.2707	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:81:39,42:39:1396:42:1504:-111.269,0,-101.556	0/1:30:12,18:12:428:18:640:-48.8984,0,-29.8279	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6609	0/1:2:1,1:1:36:1:36:-2.99521,0,-2.99621	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:137:137,0:137:4916:0:0:0,-41.2411,-442.59	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:101:37,64:37:1320:64:2299:-176.765,0,-88.6979	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.586	0/1:105:43,62:43:1548:62:2224:-168.658,0,-108.005	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/1:60:23,37:23:816:37:1328:-101.76,0,-55.6999	0/0:143:143,0:143:5132:0:0:0,-43.0473,-462.02	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:83:39,44:39:1396:44:1584:-117.859,0,-100.954	0/0:160:160,0:160:5736:0:0:0,-48.1648,-516.356	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:97:42,55:42:1504:55:1980:-149.271,0,-106.455	0/0:145:145,0:145:5204:0:0:0,-43.6493,-468.497	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:88:35,53:35:1260:53:1900:-144.786,0,-87.2148	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/1:63:29,34:29:1044:34:1220:-91.141,0,-75.3099	0/1:95:43,52:43:1544:52:1864:-139.438,0,-110.655	0/1:75:17,58:17:612:58:2075:-164.439,0,-32.8362	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.043	0/0:127:127,0:127:4568:0:0:0,-38.2308,-411.283
chr08	5048787	.	G	C	32283.9	PASS	AB=0.476943;ABP=17.029;AC=153;AF=0.81383;AN=188;AO=5913;CIGAR=1X;DP=7511;DPB=7511;DPRA=0;EPP=12842.9;EPPR=3466.51;GTI=8;LEN=1;MEANALT=1.03191;MQM=17.9329;MQMR=36.0326;NS=94;NUMALT=1;ODDS=0.267566;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211341;QR=56520;RO=1595;RPL=0;RPP=12842.9;RPPR=3466.51;RPR=5913;RUN=1;SAF=0;SAP=12842.9;SAR=5913;SRF=0;SRP=3466.51;SRR=1595;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:743:-35.8782,-6.32163,0	1/1:134:0,134:0:0:134:4790:-228.665,-40.338,0	0/1:113:68,45:68:2413:45:1612:-42.7554,0,-165.275	1/1:214:0,214:0:0:214:7604:-344.412,-64.4204,0	0/1:66:45,21:45:1600:21:756:-14.3821,0,-112.97	0/1:57:35,22:35:1247:22:792:-20.3046,0,-85.6057	1/1:129:0,129:0:0:129:4624:-208.334,-38.8329,0	1/1:92:0,92:0:0:92:3296:-157.987,-27.6948,0	1/1:67:0,67:0:0:67:2376:-113.982,-20.169,0	1/1:101:0,101:0:0:101:3613:-162.842,-30.404,0	1/1:35:0,35:0:0:35:1252:-56.4713,-10.5361,0	1/1:33:0,33:0:0:33:1163:-56.6253,-9.93399,0	1/1:30:0,30:0:0:30:1071:-51.3856,-9.0309,0	1/1:48:0,48:0:0:48:1707:-77.6709,-14.4494,0	1/1:31:1,30:1:36:30:1076:-45.7632,-5.73366,0	1/1:24:0,24:0:0:24:860:-38.994,-7.22472,0	1/1:38:0,38:0:0:38:1356:-65.0216,-11.4391,0	1/1:34:0,34:0:0:34:1220:-58.0586,-10.235,0	1/1:16:0,16:0:0:16:572:-27.4158,-4.81648,0	1/1:215:0,215:0:0:215:7691:-347.464,-64.7215,0	1/1:113:0,113:0:0:113:4043:-183.86,-34.0164,0	0/1:109:80,29:80:2824:29:1040:-9.70073,0,-201.547	1/1:22:0,22:0:0:22:788:-35.6772,-6.62266,0	0/1:96:44,52:44:1552:52:1849:-55.1255,0,-100.072	1/1:38:0,38:0:0:38:1351:-61.5378,-11.4391,0	0/1:263:137,126:137:4823:126:4512:-103.863,0,-321.009	0/1:156:90,66:90:3191:66:2345:-60.662,0,-217.925	1/1:15:0,15:0:0:15:524:-24.5306,-4.51545,0	1/1:304:0,304:0:0:304:10904:-439.725,-91.5131,0	1/1:161:1,159:1:36:159:5699:-254.552,-45.1204,0	0/1:103:41,61:41:1460:61:2180:-67.8006,0,-90.2944	0/1:5:2,3:2:72:3:104:-3.50672,0,-4.763	1/1:14:0,14:0:0:14:504:-22.7746,-4.21442,0	0/1:6:4,2:4:144:2:72:-1.78772,0,-10.4002	1/1:15:0,15:0:0:15:527:-25.8148,-4.51545,0	1/1:8:0,8:0:0:8:288:-13.8081,-2.40824,0	1/1:96:1,94:1:36:94:3343:-132.299,-25.5529,0	0/1:169:90,79:90:3216:79:2823:-76.8293,0,-215.692	0/1:33:13,20:13:460:20:707:-24.4142,0,-28.5507	1/1:1:0,1:0:0:1:36:-1.79328,-0.30103,0	0/1:286:121,165:121:4297:165:5910:-181.516,0,-269.739	0/1:29:17,12:17:604:12:432:-10.8169,0,-41.7542	0/1:92:55,37:55:1944:37:1328:-32.2801,0,-134.065	0/1:33:18,15:18:648:15:517:-14.2847,0,-43.8401	1/1:36:0,36:0:0:36:1284:-58.2545,-10.8371,0	0/1:76:40,36:40:1376:36:1288:-29.6866,0,-92.0839	0/1:89:53,36:53:1874:36:1292:-34.67,0,-128.451	0/1:185:95,90:95:3354:90:3227:-90.0438,0,-222.502	1/1:81:0,81:0:0:81:2889:-130.714,-24.3834,0	1/1:195:0,195:0:0:195:6990:-314.88,-58.7009,0	1/1:163:0,163:0:0:163:5822:-236.123,-49.0679,0	0/1:6:3,3:3:108:3:108:-3.215,0,-7.43109	0/1:176:103,73:103:3662:73:2610:-71.906,0,-249.216	0/1:48:24,24:24:860:24:860:-20.5306,0,-56.9183	0/1:11:8,3:8:280:3:108:-1.98495,0,-20.3254	0/1:138:66,72:66:2317:72:2580:-75.5158,0,-150.829	0/1:54:41,13:41:1468:13:464:-4.89602,0,-105.257	1/1:7:0,7:0:0:7:252:-10.213,-2.10721,0	0/1:17:9,8:9:320:8:284:-7.15628,0,-21.7117	1/1:70:0,70:0:0:70:2491:-113.601,-21.0721,0	1/1:77:0,77:0:0:77:2733:-124.842,-23.1793,0	1/1:4:0,4:0:0:4:144:-6.63513,-1.20412,0	0/1:237:119,118:119:4260:118:4228:-98.9679,0,-280.073	1/1:152:1,151:1:36:151:5395:-240.338,-42.4575,0	1/1:77:0,77:0:0:77:2756:-125.032,-23.1793,0	1/1:78:0,78:0:0:78:2791:-126.266,-23.4803,0	1/1:116:3,113:3:108:113:4064:-173.132,-25.6822,0	0/1:106:43,63:43:1540:63:2255:-69.9004,0,-95.1558	1/1:15:0,15:0:0:15:536:-24.3795,-4.51545,0	1/1:57:0,57:0:0:57:2044:-97.3778,-17.1587,0	1/1:44:0,44:0:0:44:1564:-63.6733,-13.2453,0	1/1:28:0,28:0:0:28:1008:-45.3699,-8.42884,0	1/1:98:0,98:0:0:98:3486:-167.145,-29.5009,0	0/1:34:17,17:17:612:17:608:-19.0599,0,-40.57	1/1:88:0,88:0:0:88:3164:-144.167,-26.4906,0	1/1:211:0,211:0:0:211:7555:-340.17,-63.5173,0	1/1:58:1,57:1:27:57:2052:-94.642,-14.8789,0	1/1:120:0,120:0:0:120:4296:-205.276,-36.1236,0	1/1:3:0,3:0:0:3:108:-6.2401,-0.90309,0	1/1:127:0,127:0:0:127:4536:-205.64,-38.2308,0	0/1:81:43,38:43:1527:38:1364:-40.6607,0,-102.37	1/1:176:0,176:0:0:176:6283:-286.343,-52.9813,0	1/1:60:0,60:0:0:60:2129:-97.0939,-18.0618,0	1/1:35:0,35:0:0:35:1244:-56.4533,-10.5361,0	0/1:31:16,15:16:576:15:527:-14.8287,0,-38.403	1/1:48:0,48:0:0:48:1712:-77.613,-14.4494,0	1/1:16:0,16:0:0:16:572:-27.4158,-4.81648,0	0/1:35:16,19:16:550:19:684:-21.9982,0,-35.5398	1/1:37:0,37:0:0:37:1312:-63.2966,-11.1381,0	0/1:8:6,2:6:199:2:72:-0.998989,0,-14.6919	0/1:54:12,42:12:416:42:1496:-52.6364,0,-18.7547	0/1:34:13,21:13:447:21:752:-23.8282,0,-27.4373	1/1:106:0,106:0:0:106:3778:-170.588,-31.9092,0	1/1:43:0,43:0:0:43:1544:-69.8349,-12.9443,0
chr08	5058972	.	AATGG	GATGG	180404	PASS	AB=0.468291;ABP=29.1752;AC=148;AF=0.795699;AN=186;AO=6707;CIGAR=1X4M;DP=8365;DPB=8366.6;DPRA=90.913;EPP=14558.4;EPPR=3436.11;GTI=1;LEN=1;MEANALT=1.72826;MQM=59.9797;MQMR=59.9734;NS=93;NUMALT=1;ODDS=1.71478;PAIRED=0;PAIREDR=0;PAO=2.5;PQA=83.5;PQR=0;PRO=4;QA=233726;QR=54181;RO=1581;RPL=3281;RPP=9.8174;RPPR=4.01157;RPR=3426;RUN=1;SAF=3282;SAP=9.63091;SAR=3425;SRF=777;SRP=4.01157;SRR=804;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,38:0:0:38:1368:-123.149,-11.4391,0	1/1:107:1,105:1:34:105:3705:-329.972,-28.8601,0	0/1:187:92,92:92:3197:92:3256:-237.511,0,-232.209	1/1:113:1,108:1:36:108:3741:-333.41,-29.5489,0	0/1:70:41,29:41:1442:29:1021:-71.1282,0,-109.004	0/1:38:16,22:16:546:22:765:-57.7286,0,-38.0219	1/1:101:0,101:0:0:101:3556:-320.248,-30.404,0	1/1:122:0,122:0:0:122:4250:-382.682,-36.7257,0	1/1:103:0,101:0:0:101:3540:-318.505,-30.404,0	1/1:87:0,84:0:0:84:2929:-263.512,-25.2865,0	1/1:122:0,122:0:0:122:4108:-369.91,-36.7257,0	1/1:154:0,152:0:0:152:5245:-471.942,-45.7566,0	1/1:147:1,146:1:33:146:5118:-457.364,-40.9523,0	1/1:136:0,134:0:0:134:4566:-410.908,-40.338,0	1/1:116:0,116:0:0:116:4028:-362.711,-34.9195,0	1/1:104:0,103:0:0:103:3528:-317.522,-31.0061,0	1/1:110:0,109:0:0:109:3735:-336.062,-32.8123,0	1/1:84:0,84:0:0:84:2916:-262.676,-25.2865,0	1/1:78:0,77:0:0:77:2711:-244.002,-23.1793,0	1/1:84:0,81:0:0:81:2874:-258.637,-24.3834,0	1/1:130:0,128:0:0:128:4462:-401.552,-38.5318,0	0/1:20:14,6:14:473:6:212:-13.4042,0,-36.8707	1/1:53:0,48:0:0:48:1699:-152.894,-14.4494,0	0/1:67:22,45:22:776:45:1584:-122.679,0,-49.993	1/1:50:0,50:0:0:50:1764:-159.039,-15.0515,0	0/1:173:95,76:95:3258:76:2699:-191.397,0,-241.684	0/1:189:99,88:99:3367:88:3098:-222.395,0,-246.601	1/1:50:0,50:0:0:50:1708:-154,-15.0515,0	1/1:127:0,127:0:0:127:4461:-401.665,-38.2308,0	0/1:71:10,61:10:333:61:2096:-167.53,0,-8.91936	0/1:70:47,22:47:1627:22:760:-47.5856,0,-125.585	0/1:5:4,1:4:143:1:36:-2.09312,0,-11.7163	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:334:0,332:0:0:332:11479:-1032.75,-99.942,0	0/1:94:52,40:52:1788:40:1375:-96.0602,0,-133.219	0/1:83:41,42:41:1410:42:1462:-106.887,0,-102.208	.:.:.:.:.:.:.:.	0/1:121:59,62:59:2017:62:2179:-159.947,0,-145.374	0/1:60:32,28:32:1101:28:955:-68.1943,0,-81.3329	0/1:131:74,57:74:2529:57:2023:-142.907,0,-188.426	0/1:123:70,50:70:2426:50:1765:-122.755,0,-182.224	1/1:82:1,80:1:36:80:2742:-243.494,-21.0751,0	0/1:67:38,28:38:1318:28:996:-69.7272,0,-98.6902	0/1:99:60,39:60:2082:39:1378:-94.5152,0,-157.847	0/1:89:47,42:47:1576:42:1487:-107.332,0,-115.33	1/1:55:0,55:0:0:55:1939:-174.783,-16.5567,0	1/1:129:0,128:0:0:128:4458:-401.121,-38.5318,0	1/1:77:0,76:0:0:76:2637:-237.312,-22.8783,0	0/1:8:3,5:3:106:5:180:-14.1438,0,-7.48092	0/1:102:49,53:49:1653:53:1887:-139.403,0,-118.347	0/1:45:27,18:27:936:18:640:-44.383,0,-71.0054	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:120:58,62:58:1990:62:2170:-159.44,0,-143.25	0/1:34:14,20:14:477:20:681:-51.3696,0,-33.0196	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:5,4:5:177:4:144:-10.6043,0,-13.5677	1/1:83:1,82:1:36:82:2853:-253.409,-21.3872,0	1/1:176:2,173:2:71:173:5964:-530.173,-46.2231,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:96:41,55:41:1393:55:1939:-145.527,0,-96.4037	1/1:120:0,120:0:0:120:4230:-380.882,-36.1236,0	1/1:69:0,69:0:0:69:2433:-219.225,-20.7711,0	1/1:49:0,48:0:0:48:1681:-151.224,-14.4494,0	1/1:82:0,81:0:0:81:2845:-255.927,-24.3834,0	0/1:103:71,31:71:2444:31:1098:-68.0639,0,-189.152	1/1:77:0,77:0:0:77:2625:-236.498,-23.1793,0	1/1:66:0,65:0:0:65:2304:-207.348,-19.567,0	1/1:145:0,144:0:0:144:4957:-445.934,-43.3483,0	1/1:14:0,14:0:0:14:487:-44.1584,-4.21442,0	1/1:70:0,70:0:0:70:2454:-221.113,-21.0721,0	0/1:91:51,36:51:1784:36:1284:-89.3642,0,-134.344	1/1:121:0,119:0:0:119:4137:-372.305,-35.8226,0	1/1:102:0,99:0:0:99:3507:-315.543,-29.802,0	1/1:91:0,88:0:0:88:3100:-278.867,-26.4906,0	1/1:106:0,106:0:0:106:3693:-332.572,-31.9092,0	0/1:13:7,6:7:246:6:216:-15.8771,0,-18.5682	1/1:67:0,67:0:0:67:2334:-210.318,-20.169,0	0/1:83:41,42:41:1391:42:1481:-108.597,0,-100.495	1/1:117:3,114:3:93:114:4028:-354.03,-26.5425,0	1/1:137:0,136:0:0:136:4675:-420.669,-40.9401,0	1/1:101:0,100:0:0:100:3458:-311.183,-30.103,0	0/1:102:51,51:51:1698:51:1768:-128.695,0,-122.393	1/1:222:0,221:0:0:221:7676:-690.534,-66.5276,0	1/1:56:0,55:0:0:55:1911:-172,-16.5567,0	0/1:113:57,54:57:1922:54:1822:-130.537,0,-139.538	1/1:97:0,96:0:0:96:3324:-299.018,-28.8989,0	0/1:89:42,46:42:1431:46:1581:-115.861,0,-102.369	0/1:139:78,60:78:2650:60:2054:-143.301,0,-196.926	0/1:90:61,29:61:2063:29:1002:-63.396,0,-158.808	1/1:70:0,68:0:0:68:2418:-217.608,-20.47,0	1/1:210:0,209:0:0:209:7307:-657.383,-62.9153,0
chr08	5059053	.	C	T	33834.7	PASS	AB=0.589054;ABP=225.782;AC=35;AF=0.18617;AN=188;AO=1913;CIGAR=1X;DP=8089;DPB=8089;DPRA=1.11005;EPP=4148.36;EPPR=13238.6;GTI=5;LEN=1;MEANALT=1.05;MQM=59.8928;MQMR=59.9596;NS=94;NUMALT=1;ODDS=1.26839;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68458;QR=220390;RO=6171;RPL=1;RPP=4148.36;RPPR=13247.3;RPR=1912;RUN=1;SAF=1913;SAP=4157.04;SAR=0;SRF=6170;SRP=13394.5;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.372	0/1:152:77,75:77:2752:75:2681:-195.777,0,-202.166	0/0:175:175,0:175:6265:0:0:0,-52.6802,-563.941	0/1:65:38,27:38:1368:27:968:-67.8704,0,-103.854	0/1:46:13,33:13:453:33:1184:-93.0209,0,-27.2522	0/0:149:149,0:149:5328:0:0:0,-44.8535,-479.654	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.471	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:131:131,0:131:4678:0:0:0,-39.4349,-421.16	0/0:101:101,0:101:3619:0:0:0,-30.404,-325.725	0/0:72:72,0:72:2566:0:0:0,-21.6742,-231.189	0/0:87:87,0:87:3089:0:0:0,-26.1896,-278.238	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/0:61:61,0:61:2166:0:0:0,-18.3628,-195.206	0/0:205:205,0:205:7336:0:0:0,-61.7111,-660.29	0/0:131:131,0:131:4700:0:0:0,-39.4349,-423.159	0/1:100:32,68:32:1137:68:2431:-188.916,0,-72.534	0/0:90:90,0:90:3207:0:0:0,-27.0927,-288.853	0/1:92:53,39:53:1871:39:1400:-98.6044,0,-140.974	0/0:97:97,0:97:3453:0:0:0,-29.1999,-310.912	0/1:184:65,119:65:2320:119:4256:-327.82,0,-153.671	0/1:129:41,88:41:1452:88:3152:-245.071,0,-92.1403	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:170:170,0:170:6072:0:0:0,-51.1751,-546.576	0/0:70:67,3:67:2396:3:108:0,-10.9969,-205.817	0/1:100:53,47:53:1887:47:1684:-121.744,0,-140.005	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:173:173,0:173:6161:0:0:0,-52.0782,-554.591	0/1:149:52,97:52:1848:97:3480:-268.39,0,-121.745	0/1:46:23,23:23:828:23:811:-59.4626,0,-60.9967	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:184:73,111:73:2608:111:3966:-301.709,0,-179.579	0/1:37:19,18:19:684:18:648:-47.5138,0,-50.7522	0/1:150:48,102:48:1701:102:3657:-284.177,0,-108.219	0/1:65:36,29:36:1287:29:1035:-73.8961,0,-96.5658	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:119:33,86:33:1176:86:3080:-241.604,0,-70.3219	0/1:85:27,58:27:960:58:2076:-161.523,0,-61.1287	0/1:178:69,109:69:2472:109:3882:-295.984,0,-169.15	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.54	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.961	0/0:136:135,0:135:4828:0:0:0,-40.639,-434.316	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:111:55,56:55:1976:56:1991:-146.049,0,-144.7	0/1:57:30,26:30:1076:26:919:-65.8067,0,-79.9354	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:146:66,80:66:2348:80:2872:-214.764,0,-167.629	0/1:89:35,54:35:1248:54:1936:-147.725,0,-85.8332	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.927	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:133:58,75:58:2061:75:2688:-202.128,0,-145.722	0/0:125:125,0:125:4473:0:0:0,-37.6287,-402.738	0/0:75:73,1:73:2624:1:36:0,-19.0378,-232.809	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/0:132:131,1:131:4671:1:36:0,-36.1377,-416.954	0/1:143:39,104:39:1388:104:3728:-292.584,0,-82.1716	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:76:76,0:76:2693:0:0:0,-22.8783,-242.614	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/0:33:33,0:33:1153:0:0:0,-9.93399,-104.074	0/0:78:77,1:77:2737:1:36:0,-19.8821,-242.974	0/1:114:31,83:31:1108:83:2980:-234.114,0,-65.7136	0/0:153:153,0:153:5456:0:0:0,-46.0576,-491.114	0/0:115:115,0:115:4120:0:0:0,-34.6184,-370.984	0/0:78:78,0:78:2746:0:0:0,-23.4803,-247.368	0/0:61:59,2:59:2112:2:72:0,-11.5261,-183.512	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.949	0/1:138:69,69:69:2460:69:2480:-181.911,0,-179.622	0/0:184:183,0:183:6552:0:0:0,-55.0885,-589.273	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.935	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.566	0/1:50:30,20:30:1076:20:716:-49.7162,0,-82.1014	0/0:124:124,0:124:4460:0:0:0,-37.3277,-401.568	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:87:36,51:36:1284:51:1823:-137.889,0,-89.6738	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.765	0/1:48:24,24:24:860:24:864:-63.6331,0,-63.2724	0/1:117:59,58:59:2120:58:2077:-151.98,0,-155.848	0/1:74:21,53:21:747:53:1877:-146.929,0,-45.2781	0/0:67:66,0:66:2345:0:0:0,-19.868,-210.948	0/0:114:114,0:114:4100:0:0:0,-34.3174,-369.183
chr08	5059079	.	ACTTCTCATT	ATTTCTCATA,ATTTCTCATT	161658	PASS	AB=0.396123,0.593538;ABP=293.089,238.218;AC=153,35;AF=0.81383,0.18617;AN=188;AO=5675,1845;CIGAR=1M1X7M1X,1M1X8M;DP=7613;DPB=7612.9;DPRA=0,1.1343;EPP=12291.4,4000.7;EPPR=7.35324;GTI=6;LEN=10,1;MEANALT=2.23404,2.775;MQM=59.9893,59.9561;MQMR=60;NS=94;NUMALT=2;ODDS=0.10186;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=200052,65928;QR=72;RO=2;RPL=5671,1844;RPP=12291.4,4000.7;RPPR=7.35324;RPR=4,1;RUN=1,1;SAF=5675,1845;SAP=12326.1,4009.38;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46,0:0:0:46,0:1602,0:-144.468,-13.8474,0,-144.468,-13.8474,-144.468	1/1:62:0,58,0:0:0:58,0:2048,0:-184.261,-17.4597,0,-184.261,-17.4597,-184.261	1/2:145:0,72,72:0:0:72,72:2539,2573:-416.656,-209.922,-188.248,-206.866,0,-185.192	1/1:171:0,167,0:0:0:167,0:5854,0:-526.663,-50.272,0,-526.663,-50.272,-526.663	1/2:61:0,32,24:0:0:32,24:1128,864:-162.339,-70.4997,-60.8667,-91.8382,0,-84.6135	1/2:45:0,12,33:0:0:12,33:416,1188:-131.104,-97.2946,-93.6822,-34.1593,0,-24.2253	1/1:145:0,144,0:0:0:144,0:5102,0:-458.967,-43.3483,0,-458.967,-43.3483,-458.967	1/1:78:0,76,0:0:0:76,0:2671,0:-240.307,-22.8783,0,-240.307,-22.8783,-240.307	1/1:83:0,83,0:0:0:83,0:2951,0:-265.824,-24.9855,0,-265.824,-24.9855,-265.824	1/1:70:0,70,0:0:0:70,0:2484,0:-223.814,-21.0721,0,-223.814,-21.0721,-223.814	1/1:45:0,44,0:0:0:44,0:1546,0:-139.11,-13.2453,0,-139.11,-13.2453,-139.11	1/1:122:0,120,0:0:0:120,0:4203,0:-378.097,-36.1236,0,-378.097,-36.1236,-378.097	1/1:94:1,91,0:1:36:91,0:3169,0:-281.891,-24.4295,0,-282.192,-27.3937,-285.129	1/1:64:0,64,0:0:0:64,0:2251,0:-202.854,-19.2659,0,-202.854,-19.2659,-202.854	1/1:82:0,80,0:0:0:80,0:2782,0:-250.316,-24.0824,0,-250.316,-24.0824,-250.316	1/1:63:0,62,0:0:0:62,0:2177,0:-195.993,-18.6639,0,-195.993,-18.6639,-195.993	1/1:29:0,29,0:0:0:29,0:1024,0:-92.4715,-8.72987,0,-92.4715,-8.72987,-92.4715	1/1:31:0,31,0:0:0:31,0:1086,0:-98.0484,-9.33193,0,-98.0484,-9.33193,-98.0484	1/1:56:0,53,1:0:0:53,1:1818,36:-163.555,-15.9546,0,-160.617,-13.0072,-160.316	1/1:187:0,186,0:0:0:186,0:6572,0:-591.337,-55.9916,0,-591.337,-55.9916,-591.337	1/1:128:0,128,0:0:0:128,0:4512,0:-406.253,-38.5318,0,-406.253,-38.5318,-406.253	1/2:95:0,29,66:0:0:29,66:1007,2355:-274.195,-192.34,-183.61,-82.2044,0,-62.3365	1/1:90:0,89,0:0:0:89,0:3164,0:-284.627,-26.7917,0,-284.627,-26.7917,-284.627	1/2:88:0,52,35:0:0:52,35:1851,1252:-253.007,-102.147,-86.4939,-150.915,0,-140.379	1/1:91:0,89,0:0:0:89,0:3152,0:-283.573,-26.7917,0,-283.573,-26.7917,-283.573	1/2:180:0,62,114:0:0:62,114:2198,4078:-511.649,-332.582,-313.918,-179.116,0,-144.799	1/2:122:0,36,85:0:0:36,85:1276,3004:-348.703,-244.751,-233.914,-104.053,0,-78.4656	1/1:46:0,45,0:0:0:45,0:1563,0:-140.597,-13.5464,0,-140.597,-13.5464,-140.597	1/1:164:0,164,0:0:0:164,0:5794,0:-521.58,-49.3689,0,-521.58,-49.3689,-521.58	1/1:68:0,62,3:0:0:62,3:2185,108:-196.6,-18.6639,0,-187.787,-9.80332,-186.884	1/2:97:0,50,46:0:0:50,46:1779,1640:-278.706,-133.721,-118.669,-145.02,0,-131.173	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/1:12:0,12,0:0:0:12,0:415,0:-37.6803,-3.61236,0,-37.6803,-3.61236,-37.6803	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:156:0,153,0:0:0:153,0:5425,0:-488.09,-46.0576,0,-488.09,-46.0576,-488.09	1/2:141:0,46,94:0:0:46,94:1616,3360:-405.597,-274.071,-260.224,-131.629,0,-103.332	1/2:44:0,22,22:0:0:22,22:759,792:-126.636,-64.983,-58.3604,-62.005,0,-55.3823	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:177:0,68,107:0:0:68,107:2386,3820:-505.558,-311.383,-290.913,-194.169,0,-161.958	1/2:36:0,18,17:0:0:18,17:614,612:-99.8534,-50.0398,-44.6213,-49.9062,0,-44.7887	1/2:152:0,46,104:0:0:46,104:1624,3687:-432.679,-300.43,-286.583,-132.304,0,-100.997	1/2:64:1,34,29:1:36:34,29:1211,1036:-179.93,-81.5268,-74.2293,-95.7632,0,-89.9709	1/1:54:0,54,0:0:0:54,0:1911,0:-172.267,-16.2556,0,-172.267,-16.2556,-172.267	1/2:110:0,27,81:0:0:27,81:960,2890:-313.917,-235.684,-227.556,-78.3173,0,-53.9338	1/2:81:0,25,56:0:0:25,56:869,1995:-233.614,-162.966,-155.44,-70.9981,0,-54.1404	1/2:167:0,64,102:0:0:64,102:2264,3660:-483.01,-298.607,-279.342,-184.467,0,-153.762	1/1:107:0,106,0:0:0:106,0:3748,0:-337.216,-31.9092,0,-337.216,-31.9092,-337.216	1/1:73:0,70,0:0:0:70,0:2473,0:-222.473,-21.0721,0,-222.473,-21.0721,-222.473	1/1:122:0,122,0:0:0:122,0:4320,0:-388.981,-36.7257,0,-388.981,-36.7257,-388.981	1/2:3:0,1,2:0:0:1,2:32,72:-8.79971,-6.23466,-5.93363,-2.89828,0,-2.29622	1/2:104:0,49,52:0:0:49,52:1728,1868:-293.114,-152.414,-137.664,-140.723,0,-125.07	1/2:53:0,28,24:0:0:28,24:988,856:-150.304,-69.8518,-61.423,-80.5226,0,-73.2979	1/2:8:0,2,6:0:0:2,6:72,216:-23.8592,-17.9843,-17.3823,-6.23466,0,-4.42848	1/2:137:0,59,77:0:0:59,77:2100,2764:-396.741,-225.589,-207.828,-171.277,0,-148.098	1/2:88:0,33,55:0:0:33,55:1180,1980:-258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chr08	5059091	.	T	A	60179.5	PASS	AB=0.595687;ABP=353.329;AC=35;AF=0.18617;AN=188;AO=2646;CIGAR=1X;DP=11671;DPB=11671;DPRA=1.38059;EPP=5748.73;EPPR=19572.3;GTI=4;LEN=1;MEANALT=1.04167;MQM=59.9082;MQMR=59.9698;NS=94;NUMALT=1;ODDS=1.02234;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94622;QR=321753;RO=9020;RPL=1933;RPP=1224.48;RPPR=2149.49;RPR=713;RUN=1;SAF=1933;SAP=1224.48;SAR=713;SRF=6005;SRP=2155.25;SRR=3015;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:46,0:46:1596:0:0:0,-13.8474,-143.927	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.1	0/1:152:78,74:78:2773:74:2660:-193.889,0,-204.054	0/0:321:321,0:321:11433:0:0:0,-96.6306,-1028.85	0/1:65:38,27:38:1368:27:968:-67.8704,0,-103.854	0/1:50:13,37:13:468:37:1332:-105.131,0,-27.4081	0/0:233:232,1:232:8290:1:36:0,-66.5417,-742.512	0/0:84:84,0:84:2977:0:0:0,-25.2865,-268.16	0/0:89:89,0:89:3187:0:0:0,-26.7917,-287.053	0/0:144:144,0:144:5168:0:0:0,-43.3483,-465.259	0/0:100:100,0:100:3544:0:0:0,-30.103,-319.169	0/0:124:124,0:124:4418:0:0:0,-37.3277,-397.793	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.29	0/0:66:65,0:65:2297:0:0:0,-19.5669,-206.64	0/0:149:149,0:149:5297:0:0:0,-44.8535,-476.865	0/0:69:69,0:69:2430:0:0:0,-20.7711,-218.956	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:57:56,1:56:1977:1:22:0,-14.9588,-176.003	0/0:389:388,1:388:13878:1:36:0,-113.502,-1245.2	0/0:131:131,0:131:4691:0:0:0,-39.4349,-422.35	0/1:308:94,214:94:3340:214:7655:-596.21,0,-208.1	0/0:229:229,0:229:8199:0:0:0,-68.9359,-737.922	0/1:92:54,38:54:1931:38:1368:-95.7261,0,-146.371	0/0:91:91,0:91:3230:0:0:0,-27.3937,-290.92	0/1:336:133,203:133:4767:203:7266:-552.835,0,-328.04	0/1:130:40,90:40:1432:90:3228:-251.606,0,-90.0437	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:321:321,0:321:11474:0:0:0,-96.6306,-1032.53	0/0:69:65,4:65:2328:4:133:0,-8.47415,-197.478	0/1:220:116,104:116:4152:104:3736:-270.213,0,-307.637	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:291:290,1:290:10341:1:36:0,-84.0015,-927.019	0/1:146:47,99:47:1676:99:3521:-272.946,0,-107.172	0/1:47:23,24:23:820:24:860:-63.5734,0,-59.9741	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:186:75,111:75:2676:111:3980:-302.25,0,-185.094	0/1:36:19,17:19:671:17:612:-44.5764,0,-49.8787	0/1:151:46,105:46:1644:105:3749:-292.153,0,-102.793	0/1:128:61,67:61:2183:67:2400:-177.725,0,-158.203	0/0:108:108,0:108:3859:0:0:0,-32.5112,-347.505	0/1:211:67,144:67:2404:144:5146:-399.76,0,-153.099	0/1:85:26,59:26:932:59:2116:-165.121,0,-58.6113	0/1:274:117,157:117:4188:157:5624:-423.751,0,-294.62	0/0:188:188,0:188:6726:0:0:0,-56.5936,-605.274	0/0:183:182,0:182:6500:0:0:0,-54.7875,-584.724	0/0:233:233,0:233:8339:0:0:0,-70.14,-750.517	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:110:54,56:54:1931:56:2003:-147.43,0,-140.953	0/1:93:45,48:45:1605:48:1720:-127.087,0,-116.742	0/1:8:2,5:2:72:5:180:-14.085,0,-4.36968	0/1:144:67,77:67:2391:77:2746:-204.03,0,-172.095	0/1:141:54,87:54:1923:87:3112:-237.862,0,-130.901	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:25:16,9:16:568:9:324:-21.9801,0,-43.9261	0/0:103:103,0:103:3687:0:0:0,-31.0061,-331.762	0/0:156:156,0:156:5555:0:0:0,-46.9607,-500.077	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:240:110,130:110:3921:130:4643:-345.786,0,-280.835	0/0:220:220,0:220:7857:0:0:0,-66.2266,-707.158	0/0:71:70,1:70:2494:1:36:0,-17.7749,-221.114	0/0:129:129,0:129:4591:0:0:0,-38.8329,-413.354	0/0:381:379,2:379:13527:2:72:0,-107.856,-1210.39	0/1:258:70,188:70:2504:188:6735:-528.47,0,-147.947	0/0:58:58,0:58:2050:0:0:0,-17.4597,-184.771	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.324	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.401	0/0:75:73,2:73:2604:2:66:0,-16.3093,-228.341	0/1:115:32,83:32:1148:83:2967:-232.624,0,-69.0114	0/0:150:147,2:147:5214:2:52:0,-40.2404,-464.298	0/0:246:245,0:245:8760:0:0:0,-73.7523,-788.028	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.032	0/0:61:58,3:58:2076:3:97:0,-9.31284,-178.061	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:78:78,0:78:2758:0:0:0,-23.4803,-248.46	0/1:138:67,71:67:2369:71:2544:-187.669,0,-171.148	0/0:350:348,2:348:12465:2:54:0,-100.231,-1116.33	0/0:116:115,1:115:4092:1:36:0,-31.3212,-364.738	0/0:95:95,0:95:3349:0:0:0,-28.5978,-301.626	0/1:93:50,43:50:1769:43:1544:-111.257,0,-131.495	0/0:241:240,1:240:8567:1:36:0,-68.95,-767.429	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/1:85:35,50:35:1244:50:1789:-135.673,0,-86.6771	0/0:92:92,0:92:3283:0:0:0,-27.6948,-295.062	0/1:47:23,24:23:811:24:856:-63.2127,0,-59.1616	0/1:113:55,58:55:1947:58:2062:-151.833,0,-141.489	0/1:152:44,108:44:1559:108:3852:-301.121,0,-94.8444	0/0:131:131,0:131:4688:0:0:0,-39.4349,-422.081	0/0:183:183,0:183:6520:0:0:0,-55.0885,-586.885
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chr08	5073443	.	A	G	61773.5	PASS	AB=0.495583;ABP=3.95021;AC=36;AF=0.191489;AN=188;AO=2765;CIGAR=1X;DP=15820;DPB=15820;DPRA=1.13339;EPP=6007.13;EPPR=28327.7;GTI=1;LEN=1;MEANALT=1.04167;MQM=59.975;MQMR=59.9949;NS=94;NUMALT=1;ODDS=1.24875;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97614;QR=463742;RO=13052;RPL=1419;RPP=7.19539;RPPR=20.2603;RPR=1346;RUN=1;SAF=1419;SAP=7.19539;SAR=1346;SRF=6685;SRP=19.8344;SRR=6367;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.501	0/0:233:230,1:230:8191:1:36:0,-66.2995,-733.611	0/1:207:106,101:106:3779:101:3539:-256.406,0,-277.996	0/0:409:408,1:408:14526:1:36:0,-119.523,-1303.48	0/1:112:65,47:65:2308:47:1675:-117.321,0,-174.263	0/1:106:50,56:50:1773:56:1945:-143.41,0,-127.942	0/0:152:152,0:152:5423:0:0:0,-45.7566,-488.115	0/0:271:271,0:271:9636:0:0:0,-81.5791,-867.2	0/0:212:212,0:212:7514:0:0:0,-63.8184,-676.308	0/0:179:179,0:179:6352:0:0:0,-53.8844,-571.687	0/0:105:105,0:105:3714:0:0:0,-31.6081,-334.464	0/0:206:206,0:206:7280:0:0:0,-62.0122,-655.259	0/0:189:189,0:189:6712:0:0:0,-56.8947,-604.16	0/0:206:206,0:206:7319:0:0:0,-62.0122,-658.764	0/0:192:192,0:192:6757:0:0:0,-57.7978,-608.215	0/0:167:167,0:167:5895:0:0:0,-50.272,-530.667	0/0:122:122,0:122:4325:0:0:0,-36.7257,-389.428	0/0:119:119,0:119:4209:0:0:0,-35.8226,-378.994	0/0:104:104,0:104:3692:0:0:0,-31.3071,-332.483	0/0:212:212,0:212:7524:0:0:0,-63.8184,-677.208	0/0:322:322,0:322:11493:0:0:0,-96.9317,-1034.25	0/1:80:25,55:25:896:55:1945:-151.242,0,-56.878	0/0:215:215,0:215:7638:0:0:0,-64.7214,-687.464	0/1:185:112,73:112:4016:73:2580:-176.758,0,-305.938	0/0:135:135,0:135:4799:0:0:0,-40.639,-432.069	0/1:467:257,210:257:9140:210:7452:-530.147,0,-681.999	0/1:391:199,192:199:7092:192:6830:-497.07,0,-520.638	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/0:339:339,0:339:12106:0:0:0,-102.049,-1089.39	0/0:171:170,1:170:6017:1:36:0,-47.8779,-538.043	0/1:231:119,112:119:4246:112:3928:-284.13,0,-312.781	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:406:405,1:405:14356:1:36:0,-118.62,-1288.21	0/1:163:87,76:87:3104:76:2673:-191.748,0,-230.52	0/1:108:49,59:49:1713:59:2028:-150.276,0,-121.942	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:257:134,123:134:4790:123:4353:-314.581,0,-353.891	0/1:45:20,25:20:708:25:892:-67.0533,0,-50.4992	0/1:203:120,83:120:4288:83:2948:-204.444,0,-324.989	0/1:156:87,69:87:3067:69:2415:-170.642,0,-229.298	0/0:151:151,0:151:5407:0:0:0,-45.4555,-486.759	0/1:121:70,51:70:2472:51:1828:-128.376,0,-186.311	0/1:128:65,63:65:2320:63:2237:-163.061,0,-170.529	0/1:238:121,117:121:4324:117:4126:-299.179,0,-317.692	0/0:112:112,0:112:3987:0:0:0,-33.7154,-359.019	0/0:253:253,0:253:8986:0:0:0,-76.1606,-808.726	0/0:169:169,0:169:5981:0:0:0,-50.8741,-538.4	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:135:78,57:78:2766:57:2022:-141.613,0,-208.543	0/1:130:75,55:75:2676:55:1950:-136.641,0,-201.952	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:249:128,121:128:4548:121:4258:-308.443,0,-334.531	0/1:73:39,34:39:1384:34:1216:-87.7714,0,-102.884	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:11:8,3:8:288:3:104:-6.39148,0,-22.9561	0/0:168:168,0:168:5953:0:0:0,-50.573,-535.883	0/0:238:237,1:237:8418:1:36:0,-68.0469,-754.031	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:260:108,152:108:3860:152:5425:-410.112,0,-269.328	0/0:240:240,0:240:8565:0:0:0,-72.2472,-770.836	0/0:157:157,0:157:5564:0:0:0,-47.2617,-500.888	0/0:122:122,0:122:4344:0:0:0,-36.7257,-391.138	0/0:259:256,3:256:9109:3:108:0,-67.8916,-809.716	0/1:295:102,193:102:3640:193:6786:-522.016,0,-239.002	0/0:91:89,2:89:3155:2:72:0,-20.557,-277.34	0/0:138:138,0:138:4901:0:0:0,-41.5421,-441.244	0/0:141:141,0:141:4959:0:0:0,-42.4452,-446.463	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:123:123,0:123:4348:0:0:0,-37.0267,-391.498	0/1:159:90,69:90:3191:69:2447:-172.621,0,-239.552	0/0:289:289,0:289:10251:0:0:0,-86.9977,-922.528	0/0:237:235,1:235:8372:1:27:0,-68.6582,-750.744	0/0:179:179,0:179:6361:0:0:0,-53.8844,-572.582	0/0:236:234,2:234:8250:2:72:0,-64.2064,-735.689	0/1:18:5,13:5:171:13:464:-36.679,0,-10.3069	0/0:204:204,0:204:7264:0:0:0,-61.4101,-653.815	0/1:176:90,86:90:3208:86:3020:-219.048,0,-235.963	0/0:340:340,0:340:12136:0:0:0,-102.35,-1092.09	0/0:189:188,1:188:6710:1:36:0,-53.2964,-600.379	0/0:175:175,0:175:6210:0:0:0,-52.6802,-559.003	0/1:200:104,96:104:3715:96:3366:-242.949,0,-274.346	0/0:317:317,0:317:11179:0:0:0,-95.4265,-1006.02	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.995	0/1:166:85,81:85:3010:81:2825:-204.519,0,-221.161	0/0:191:191,0:191:6767:0:0:0,-57.4967,-609.11	0/1:100:51,49:51:1812:49:1717:-124.71,0,-133.259	0/1:184:84,100:84:2995:100:3539:-263.33,0,-214.392	0/1:166:52,114:52:1851:114:4023:-312.29,0,-116.898	0/0:265:264,1:264:9376:1:32:0,-76.5736,-840.613	0/0:291:290,1:290:10252:1:27:0,-84.8999,-919.921
chr08	5137790	.	T	C	53737.1	PASS	AB=0.501785;ABP=3.14211;AC=34;AF=0.180851;AN=188;AO=2416;CIGAR=1X;DP=13704;DPB=13704;DPRA=1.03952;EPP=5249.29;EPPR=24510.2;GTI=0;LEN=1;MEANALT=1.02041;MQM=59.0091;MQMR=59.9005;NS=94;NUMALT=1;ODDS=0.928951;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85235;QR=401687;RO=11286;RPL=1165;RPP=9.65774;RPPR=16.0168;RPR=1251;RUN=1;SAF=1165;SAP=9.65774;SAR=1251;SRF=5513;SRP=16.0168;SRR=5773;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:195:194,1:194:6899:1:32:0,-55.5015,-617.739	0/1:194:104,90:104:3678:90:3114:-221.732,0,-272.195	0/0:319:319,0:319:11386:0:0:0,-96.0286,-1024.62	0/1:109:57,51:57:2025:51:1832:-132.193,0,-149.636	0/1:101:69,32:69:2467:32:1139:-72.3699,0,-191.879	0/0:363:363,0:363:12899:0:0:0,-109.274,-1160.73	0/0:206:206,0:206:7319:0:0:0,-62.0122,-658.484	0/0:149:148,1:148:5281:1:36:0,-41.2552,-471.814	0/0:219:219,0:219:7781:0:0:0,-65.9256,-700.3	0/0:111:111,0:111:3902:0:0:0,-33.4143,-351.374	0/0:106:106,0:106:3778:0:0:0,-31.9092,-340.218	0/0:130:130,0:130:4623:0:0:0,-39.1339,-416.23	0/0:123:123,0:123:4375:0:0:0,-37.0267,-393.881	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.914	0/0:169:168,1:168:5968:1:36:0,-47.3531,-533.705	0/0:119:119,0:119:4248:0:0:0,-35.8226,-382.473	0/0:81:81,0:81:2853:0:0:0,-24.3834,-257.005	0/0:359:359,0:359:12784:0:0:0,-108.07,-1150.33	0/0:222:222,0:222:7870:0:0:0,-66.8287,-708.222	0/1:120:30,90:30:1072:90:3185:-250.698,0,-60.6689	0/0:76:75,1:75:2652:1:36:0,-19.28,-235.296	0/1:159:95,64:95:3382:64:2275:-157.148,0,-256.725	0/0:121:121,0:121:4331:0:0:0,-36.4246,-389.964	0/1:377:186,191:186:6623:191:6744:-493.37,0,-482.655	0/1:233:123,110:123:4370:110:3878:-278.982,0,-323.333	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.858	0/0:355:355,0:355:12663:0:0:0,-106.866,-1138.17	0/0:130:120,10:120:4282:10:351:0,-7.20752,-353.525	0/1:195:112,83:112:4024:83:2921:-204.277,0,-303.618	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:8:8,0:8:266:0:0:0,-2.40824,-24.2261	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:296:295,1:295:10471:1:36:0,-85.5261,-938.695	0/1:166:98,68:98:3469:68:2365:-163.035,0,-262.449	0/1:153:60,93:60:2125:93:3246:-245.77,0,-145.458	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:198:102,96:102:3643:96:3349:-241.782,0,-268.45	0/1:76:39,37:39:1391:37:1307:-95.0226,0,-102.61	0/1:174:103,71:103:3672:71:2525:-174.783,0,-278.303	0/1:108:60,48:60:2156:48:1705:-121.223,0,-161.74	0/0:104:104,0:104:3683:0:0:0,-31.3071,-331.673	0/1:163:73,90:73:2601:90:3181:-237.15,0,-185.269	0/1:122:68,54:68:2378:54:1913:-135.475,0,-177.544	0/1:199:100,99:100:3588:99:3517:-256.673,0,-263.219	0/0:164:164,0:164:5832:0:0:0,-49.3689,-524.964	0/0:146:145,1:145:5166:1:36:0,-40.3521,-461.111	0/0:297:296,1:296:10531:1:36:0,-85.8076,-943.838	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:218:99,119:99:3520:119:4204:-312.79,0,-251.383	0/1:92:40,52:40:1421:52:1806:-134.785,0,-100.491	0/1:12:6,6:6:216:6:216:-16.1738,0,-16.1782	0/1:157:79,78:79:2801:78:2788:-203.746,0,-205.067	0/1:53:30,23:30:1080:23:808:-57.0286,0,-81.5587	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:19:14,5:14:504:5:176:-10.4654,0,-39.9785	0/0:125:123,2:123:4400:2:72:0,-30.792,-389.335	0/0:177:177,0:177:6239:0:0:0,-53.2823,-561.607	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:211:122,89:122:4334:89:3153:-220.478,0,-326.715	0/0:202:202,0:202:7209:0:0:0,-60.8081,-648.829	0/0:133:133,0:133:4744:0:0:0,-40.037,-426.625	0/0:111:111,0:111:3957:0:0:0,-33.4143,-356.315	0/0:206:205,1:205:7322:1:36:0,-58.4139,-654.712	0/1:196:68,128:68:2413:128:4524:-348.197,0,-158.423	0/0:67:64,3:64:2245:3:108:0,-10.0938,-192.217	0/0:190:190,0:190:6767:0:0:0,-57.1957,-609.066	0/0:161:160,1:160:5670:1:36:0,-44.8676,-506.822	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/0:197:197,0:197:7011:0:0:0,-59.3029,-631.054	0/1:94:52,42:52:1831:42:1491:-106.118,0,-136.769	0/0:329:329,0:329:11746:0:0:0,-99.0389,-1056.92	0/0:243:243,0:243:8688:0:0:0,-73.1503,-781.911	0/0:166:165,1:165:5876:1:36:0,-46.3727,-524.935	0/0:132:131,1:131:4621:1:36:0,-36.1377,-412.455	0/1:6:1,5:1:36:5:165:-13.3622,0,-1.79209	0/0:188:188,0:188:6737:0:0:0,-56.5936,-606.271	0/1:216:96,120:96:3391:120:4241:-315.632,0,-240.38	0/0:363:363,0:363:12958:0:0:0,-109.274,-1165.26	0/0:157:157,0:157:5572:0:0:0,-47.2617,-501.534	0/0:102:102,0:102:3631:0:0:0,-30.7051,-326.996	0/1:122:60,62:60:2147:62:2184:-160.059,0,-156.771	0/0:191:190,0:190:6763:0:0:0,-57.1957,-608.218	0/0:79:79,0:79:2813:0:0:0,-23.7814,-253.406	0/1:122:56,66:56:1983:66:2308:-171.114,0,-142.017	0/0:129:129,0:129:4607:0:0:0,-38.8329,-414.719	0/1:82:45,37:45:1616:37:1299:-92.4486,0,-121.046	0/1:187:82,105:82:2916:105:3699:-276.742,0,-206.221	0/1:125:41,84:41:1457:84:2986:-231.293,0,-93.7952	0/0:182:182,0:182:6510:0:0:0,-54.7875,-585.983	0/0:200:199,1:199:7082:1:36:0,-56.6077,-633.843
chr08	5139226	.	CCGCTA	CCACTA,CCACTG	158601	PASS	AB=0.446102,0.547184;ABP=70.658,54.8543;AC=150,36;AF=0.806452,0.193548;AN=186;AO=5707,1481;CIGAR=2M1X3M,2M1X2M1X;DP=7232;DPB=7232.17;DPRA=19.6413,1.08237;EPP=12136.4,3175.68;EPPR=9.52472;GTI=1;LEN=1,6;MEANALT=1.8587,2.43902;MQM=59.994,59.8758;MQMR=60;NS=93;NUMALT=2;ODDS=2.91469;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0;PQA=12,0;PQR=12;PRO=0.333333;QA=203945,52097;QR=107;RO=3;RPL=30,5;RPP=12136.4,3175.68;RPPR=9.52472;RPR=5677,1476;RUN=1,1;SAF=5707,1481;SAP=12395.6,3218.96;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,27,0:0:0:27,0:968,0:-87.1642,-8.12781,0,-87.1642,-8.12781,-87.1642	1/1:116:0,116,0:0:0:116,0:4144,0:-373.144,-34.9195,0,-373.144,-34.9195,-373.144	1/2:97:0,27,70:0:0:27,70:960,2476:-280.256,-202.022,-193.894,-78.5885,0,-57.5164	1/1:124:0,124,0:0:0:124,0:4437,0:-399.5,-37.3277,0,-399.5,-37.3277,-399.5	1/2:27:0,13,14:0:0:13,14:463,493:-78.2274,-40.488,-36.5746,-38.0935,0,-33.8791	1/2:57:0,27,30:0:0:27,30:968,1062:-165.803,-86.8495,-78.7217,-79.3096,0,-70.2787	1/1:119:0,118,0:0:0:118,0:4228,0:-380.34,-35.5215,0,-380.34,-35.5215,-380.34	1/1:166:1,164,0:1:36:164,0:5871,0:-524.947,-46.3863,0,-525.248,-49.3689,-528.185	1/1:44:0,40,0:0:0:40,0:1432,0:-128.822,-12.0412,0,-128.822,-12.0412,-128.822	1/1:121:0,121,0:0:0:121,0:4328,0:-389.696,-36.4246,0,-389.696,-36.4246,-389.696	1/1:40:0,39,0:0:0:39,0:1396,0:-125.657,-11.7402,0,-125.657,-11.7402,-125.657	1/1:46:0,46,0:0:0:46,0:1643,0:-148.158,-13.8474,0,-148.158,-13.8474,-148.158	1/1:45:0,45,0:0:0:45,0:1608,0:-145.01,-13.5464,0,-145.01,-13.5464,-145.01	1/1:65:0,64,0:0:0:64,0:2296,0:-206.561,-19.2659,0,-206.561,-19.2659,-206.561	1/1:41:0,41,0:0:0:41,0:1468,0:-132.416,-12.3422,0,-132.416,-12.3422,-132.416	1/1:36:0,36,0:0:0:36,0:1288,0:-116.224,-10.8371,0,-116.224,-10.8371,-116.224	1/1:50:0,49,0:0:0:49,0:1755,0:-157.873,-14.7505,0,-157.873,-14.7505,-157.873	1/1:56:0,56,0:0:0:56,0:2016,0:-181.713,-16.8577,0,-181.713,-16.8577,-181.713	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/1:190:0,189,0:0:0:189,0:6756,0:-607.904,-56.8947,0,-607.904,-56.8947,-607.904	1/1:174:0,173,0:0:0:173,0:6200,0:-557.846,-52.0782,0,-557.846,-52.0782,-557.846	1/2:104:0,39,64:0:0:39,64:1372,2237:-293.647,-181.962,-170.222,-111.676,0,-92.4101	1/1:19:0,19,0:0:0:19,0:675,0:-61.077,-5.71957,0,-61.077,-5.71957,-61.077	1/2:136:0,48,88:0:0:48,88:1724,3074:-391.033,-250.392,-235.943,-140.996,0,-114.505	1/1:24:0,24,0:0:0:24,0:843,0:-76.188,-7.22472,0,-76.188,-7.22472,-76.188	1/2:246:0,125,118:0:0:125,118:4442,4119:-696.987,-335.016,-297.387,-362.004,0,-326.483	1/2:164:0,75,87:0:0:75,87:2684,3093:-470.933,-252.062,-229.484,-218.88,0,-192.691	1/1:31:0,31,0:0:0:31,0:1112,0:-100.34,-9.33193,0,-100.34,-9.33193,-100.34	1/1:222:0,220,0:0:0:220,0:7844,0:-705.683,-66.2266,0,-705.683,-66.2266,-705.683	1/1:143:0,139,3:0:0:139,3:4972,102:-447.303,-41.8432,0,-439.03,-33.5248,-438.127	1/2:58:0,25,33:0:0:25,33:900,1186:-170.55,-97.1146,-89.5889,-73.7953,0,-63.8613	2/2:4:0,0,4:0:0:0,4:0,143:-13.2214,-13.2214,-13.2214,-1.20412,-1.20412,0	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:154:0,154,0:0:0:154,0:5520,0:-496.925,-46.3586,0,-496.925,-46.3586,-496.925	1/2:178:0,87,91:0:0:87,91:3116,3217:-516.482,-262.361,-236.171,-254.477,0,-227.083	1/2:50:0,25,24:0:0:25,24:896,854:-142.742,-69.6634,-62.1376,-73.142,0,-65.9173	.:.:.:.:.:.:.:.	1/2:94:0,41,53:0:0:41,53:1458,1873:-271.701,-152.882,-140.54,-119.173,0,-103.219	1/2:32:0,13,19:0:0:13,19:468,665:-92.6448,-54.4543,-50.541,-38.5463,0,-32.8267	1/2:81:0,37,44:0:0:37,44:1320,1536:-232.893,-125.282,-114.144,-107.964,0,-94.7185	1/2:46:0,23,23:0:0:23,23:828,808:-133.663,-66.0975,-59.1738,-67.9204,0,-60.9967	1/1:34:0,34,0:0:0:34,0:1204,0:-108.666,-10.235,0,-108.666,-10.235,-108.666	1/2:60:0,23,36:0:0:23,36:823,1257:-169.467,-102.35,-95.4268,-67.2246,0,-56.3875	1/2:62:1,31,30:1:36:31,30:1112,1062:-173.965,-83.5629,-77.1685,-87.7622,0,-81.6687	1/2:145:0,63,81:0:0:63,81:2252,2826:-413.608,-229.982,-211.017,-183.766,0,-159.383	1/1:97:0,97,0:0:0:97,0:3456,0:-311.254,-29.1999,0,-311.254,-29.1999,-311.254	1/1:87:0,86,1:0:0:86,1:3080,36:-277.068,-25.8886,0,-274.131,-22.5913,-273.83	1/1:143:0,142,0:0:0:142,0:5087,0:-457.613,-42.7463,0,-457.613,-42.7463,-457.613	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/2:118:0,66,51:0:0:66,51:2342,1796:-337.022,-146.207,-126.34,-190.808,0,-175.456	1/2:46:0,28,18:0:0:28,18:1008,623:-133.23,-50.9738,-42.545,-82.6075,0,-77.189	1/2:16:0,13,3:0:0:13,3:468,107:-47.2682,-9.07908,-5.16569,-38.5463,0,-37.6432	1/2:99:0,63,34:0:0:63,34:2232,1165:-276.445,-94.6124,-75.6475,-181.876,0,-171.641	1/2:11:0,7,4:0:0:7,4:244,143:-31.8554,-12.0173,-9.91011,-20.1922,0,-18.9881	1/1:3:0,3,0:0:0:3,0:1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chr08	5139331	.	C	A	20555.6	PASS	AB=0.530772;ABP=25.0612;AC=36;AF=0.193548;AN=186;AO=1438;CIGAR=1X;DP=6564;DPB=6564;DPRA=1.22462;EPP=3125.59;EPPR=11114.4;GTI=3;LEN=1;MEANALT=1.04651;MQM=33.9944;MQMR=57.6975;NS=93;NUMALT=1;ODDS=0.0199412;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51320;QR=181967;RO=5121;RPL=68;RPP=2562.88;RPPR=10313.3;RPR=1370;RUN=1;SAF=68;SAP=2562.88;SAR=1370;SRF=94;SRP=10321.6;SRR=5027;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.5579	0/0:100:100,0:100:3580:0:0:0,-30.103,-321.77	0/1:125:70,55:70:2478:55:1958:-105.909,0,-185.257	0/0:150:150,0:150:5371:0:0:0,-45.1545,-483.337	0/1:102:48,54:48:1704:54:1908:-129.359,0,-122.9	0/1:82:31,51:31:1108:51:1832:-114.422,0,-75.1772	0/0:57:57,0:57:2011:0:0:0,-17.1587,-181.225	0/0:72:72,0:72:2567:0:0:0,-21.6742,-230.925	0/0:56:56,0:56:1962:0:0:0,-16.8577,-176.679	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.369	0/0:66:66,0:66:2315:0:0:0,-19.868,-208.374	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.076	0/0:63:63,0:63:2233:0:0:0,-18.9649,-200.77	0/0:71:71,0:71:2518:0:0:0,-21.3731,-226.554	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.975	0/0:69:69,0:69:2451:0:0:0,-20.7711,-220.607	0/0:87:87,0:87:3076:0:0:0,-26.1896,-276.646	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.061	0/0:29:29,0:29:1015:0:0:0,-8.72987,-91.4623	0/0:111:111,0:111:3950:0:0:0,-33.4143,-355.57	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.399	0/1:145:47,98:47:1673:98:3506:-246.796,0,-107.149	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.814	0/1:78:47,29:47:1688:29:1036:-56.6539,0,-128.913	0/0:53:53,0:53:1862:0:0:0,-15.9546,-167.535	0/1:148:66,82:66:2348:82:2936:-197.192,0,-166.997	0/1:176:73,103:73:2590:103:3679:-229.378,0,-180.259	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.0832	0/0:186:184,0:184:6559:0:0:0,-55.3895,-589.914	0/0:99:93,6:93:3328:6:216:0,-13.002,-282.617	0/1:90:41,49:41:1448:49:1747:-112.109,0,-103.106	0/1:2:1,1:1:36:1:36:-2.45248,0,-2.9945	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2549	.:.:.:.:.:.:.:.	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9329	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2999	0/0:157:157,0:157:5539:0:0:0,-47.2617,-498.543	0/1:110:71,39:71:2527:39:1391:-73.1675,0,-194.363	0/1:46:20,26:20:708:26:936:-54.5753,0,-50.072	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.78903	0/1:95:44,51:44:1567:51:1836:-110.614,0,-112.659	0/1:25:15,10:15:536:10:356:-20.172,0,-41.0267	0/1:75:28,47:28:982:47:1666:-107.201,0,-66.0761	0/1:62:29,33:29:1040:33:1179:-75.0957,0,-75.2055	0/0:52:52,0:52:1833:0:0:0,-15.6536,-165.19	0/1:52:26,26:26:909:26:919:-60.8863,0,-66.4698	0/1:76:39,37:39:1383:37:1328:-78.9929,0,-101.28	0/1:112:47,65:47:1684:65:2336:-151.002,0,-117.924	0/0:54:53,1:53:1877:1:36:0,-13.068,-166.019	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.839	0/0:126:126,0:126:4490:0:0:0,-37.9298,-404.185	1/1:1:0,1:0:0:1:36:-3.18762,-0.30103,0	0/1:95:41,54:41:1453:54:1929:-112.694,0,-102.346	0/1:40:19,21:19:676:21:756:-49.8874,0,-49.1268	0/1:5:3,2:3:104:2:72:-4.0101,0,-8.18817	0/1:122:72,50:72:2571:50:1796:-100.3,0,-194.545	0/1:57:33,24:33:1180:24:864:-52.0127,0,-89.3493	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:4,3:4:144:3:108:-7.13006,0,-11.2064	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2253	0/0:112:111,1:111:3932:1:21:0,-31.6364,-351.763	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:149:71,78:71:2517:78:2749:-181.07,0,-181.928	0/0:116:116,0:116:4139:0:0:0,-34.9195,-372.519	0/0:54:54,0:54:1932:0:0:0,-16.2556,-173.79	0/0:52:52,0:52:1830:0:0:0,-15.6536,-164.824	0/0:68:67,1:67:2383:1:36:0,-17.2824,-211.494	0/1:85:27,58:27:948:58:2080:-139.379,0,-60.0443	0/0:31:29,2:29:1027:2:68:0,-3.67597,-86.9645	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.693	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.312	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3346	0/0:88:88,0:88:3137:0:0:0,-26.4906,-281.151	0/1:43:21,22:21:752:22:792:-44.9618,0,-54.9935	0/0:122:122,0:122:4331:0:0:0,-36.7257,-389.174	0/0:96:96,0:96:3405:0:0:0,-28.8989,-306.345	0/0:86:86,0:86:2997:0:0:0,-25.8886,-269.065	0/0:44:44,0:44:1576:0:0:0,-13.2453,-141.837	0/1:5:2,3:2:72:3:108:-6.62259,0,-5.32453	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.025	0/1:61:24,37:24:864:37:1328:-81.8323,0,-59.5189	0/0:149:148,1:148:5277:1:36:0,-41.6658,-471.575	0/0:105:105,0:105:3726:0:0:0,-31.6081,-335.407	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.892	0/1:86:47,39:47:1684:39:1400:-85.3151,0,-125.87	0/0:119:118,1:118:4145:1:36:0,-32.6349,-369.923	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.471	0/1:72:28,44:28:1000:44:1575:-93.431,0,-68.2764	0/0:58:58,0:58:2041:0:0:0,-17.4597,-183.579	0/1:50:29,21:29:1028:21:728:-41.4038,0,-77.6434	0/1:151:78,72:78:2779:72:2549:-150.08,0,-204.527	0/1:52:13,39:13:464:39:1380:-93.861,0,-26.4154	0/0:53:52,1:52:1845:1:36:0,-12.3563,-162.713	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.396
chr08	5139362	.	TGGTT	AGGTT,AGGTC	135464	PASS	AB=0.467791,0.527607;ABP=26.5102,20.2755;AC=148,38;AF=0.795699,0.204301;AN=186;AO=5103,1391;CIGAR=1X4M,1X3M1X;DP=6527;DPB=6526.8;DPRA=71.7033,1.20576;EPP=11084,3023.53;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=1.73626,2.30952;MQM=57.6857,32.9367;MQMR=45;NS=93;NUMALT=2;ODDS=2.41144;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=182962,48802;QR=25;RO=1;RPL=5103,1391;RPP=11084,3023.53;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=11084,3023.53;SAR=5103,1391;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28,0:0:0:28,0:1000,0:-90.1277,-8.42884,0,-90.1277,-8.42884,-90.1277	1/1:106:0,106,0:0:0:106,0:3793,0:-340.738,-31.9092,0,-340.738,-31.9092,-340.738	1/2:128:0,72,55:0:0:72,55:2584,1912:-335.893,-125.474,-103.799,-210.447,0,-193.89	1/1:149:0,149,0:0:0:149,0:5352,0:-481.626,-44.8535,0,-481.626,-44.8535,-481.626	1/2:54:0,28,26:0:0:28,26:1008,907:-144.735,-62.4989,-54.07,-82.5649,0,-74.7381	1/2:67:0,24,43:0:0:24,43:864,1497:-168.143,-97.7913,-90.5666,-70.6843,0,-57.74	1/1:60:0,60,0:0:0:60,0:2156,0:-194.202,-18.0618,0,-194.202,-18.0618,-194.202	1/1:70:0,70,0:0:0:70,0:2516,0:-226.406,-21.0721,0,-226.406,-21.0721,-226.406	1/1:57:0,57,0:0:0:57,0:2044,0:-184.04,-17.1587,0,-184.04,-17.1587,-184.04	1/1:46:0,46,0:0:0:46,0:1656,0:-149.325,-13.8474,0,-149.325,-13.8474,-149.325	1/1:67:0,67,0:0:0:67,0:2408,0:-216.742,-20.169,0,-216.742,-20.169,-216.742	1/1:75:0,75,0:0:0:75,0:2688,0:-241.669,-22.5773,0,-241.669,-22.5773,-241.669	1/1:63:0,63,0:0:0:63,0:2259,0:-203.099,-18.9649,0,-203.099,-18.9649,-203.099	1/1:74:0,73,0:0:0:73,0:2597,0:-233.371,-21.9752,0,-233.371,-21.9752,-233.371	1/1:64:0,64,0:0:0:64,0:2296,0:-206.811,-19.2659,0,-206.811,-19.2659,-206.811	1/1:73:1,71,0:1:25:71,0:2556,0:-227.533,-19.4377,0,-227.834,-21.3731,-229.777	1/1:85:0,85,0:0:0:85,0:3056,0:-274.843,-25.5876,0,-274.843,-25.5876,-274.843	1/1:47:0,46,0:0:0:46,0:1656,0:-148.654,-13.8474,0,-148.654,-13.8474,-148.654	1/1:31:0,31,0:0:0:31,0:1116,0:-100.465,-9.33193,0,-100.465,-9.33193,-100.465	1/1:111:0,111,0:0:0:111,0:3988,0:-358.987,-33.4143,0,-358.987,-33.4143,-358.987	1/1:72:0,72,0:0:0:72,0:2563,0:-230.767,-21.6742,0,-230.767,-21.6742,-230.767	1/2:130:0,40,90:0:0:40,90:1440,3187:-353.863,-236.384,-224.343,-117.828,0,-90.7354	1/1:38:0,38,0:0:0:38,0:1364,0:-123.016,-11.4391,0,-123.016,-11.4391,-123.016	1/2:78:0,47,31:0:0:47,31:1667,1080:-210.49,-74.8035,-60.6551,-136.008,0,-126.677	1/1:53:0,52,0:0:0:52,0:1868,0:-167.781,-15.6536,0,-167.781,-15.6536,-167.781	1/2:150:0,67,82:0:0:67,82:2395,2875:-409.581,-214.334,-194.165,-195.396,0,-170.712	1/2:176:0,73,103:0:0:73,103:2628,3664:-464.826,-250.483,-228.508,-214.679,0,-183.673	1/1:31:0,31,0:0:0:31,0:1107,0:-99.8269,-9.33193,0,-99.8269,-9.33193,-99.8269	1/1:186:0,183,0:0:0:183,0:6571,0:-590.971,-55.0885,0,-590.971,-55.0885,-590.971	1/1:102:0,96,6:0:0:96,6:3452,215:-310.214,-28.8989,0,-295.557,-13.9334,-293.751	1/2:92:0,42,50:0:0:42,50:1500,1756:-247.768,-125.712,-113.069,-122.392,0,-107.341	1/2:2:0,1,1:0:0:1,1:36,36:-5.71649,-2.75351,-2.45248,-3.29553,0,-2.9945	1/1:9:0,9,0:0:0:9,0:324,0:-29.49,-2.70927,0,-29.49,-2.70927,-29.49	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:144,0:-13.2999,-1.20412,0,-13.2999,-1.20412,-13.2999	1/1:4:0,4,0:0:0:4,0:144,0:-13.2999,-1.20412,0,-13.2999,-1.20412,-13.2999	1/1:160:0,160,0:0:0:160,0:5722,0:-514.966,-48.1648,0,-514.966,-48.1648,-514.966	1/2:105:0,69,35:0:0:69,35:2473,1222:-283.641,-82.1352,-61.3641,-201.57,0,-191.034	1/2:48:0,21,27:0:0:21,27:752,940:-123.045,-61.8198,-55.4982,-61.5517,0,-53.4239	2/2:1:0,0,0:0:0:0,0:0,0:0,0,0,0,0,0	1/2:95:0,44,51:0:0:44,51:1584,1811:-252.254,-123.047,-109.802,-129.539,0,-114.186	1/2:25:0,15,10:0:0:15,10:540,353:-68.6704,-24.5985,-20.083,-44.3978,0,-41.3875	1/2:72:0,27,45:0:0:27,45:972,1565:-187.423,-108.135,-100.007,-79.6248,0,-66.0784	1/2:64:0,30,34:0:0:30,34:1080,1193:-173.88,-85.7805,-76.7496,-88.4374,0,-78.2024	1/1:50:0,50,0:0:0:50,0:1787,0:-161.054,-15.0515,0,-161.054,-15.0515,-161.054	1/2:55:0,28,27:0:0:28,27:1000,952:-152.765,-71.2191,-62.7902,-81.8865,0,-73.7587	1/2:68:0,38,29:0:0:38,29:1365,1014:-177.217,-66.2221,-54.7829,-111.014,0,-102.284	1/2:110:0,43,63:0:0:43,63:1548,2187:-282.749,-156.469,-143.525,-126.325,0,-107.36	1/1:55:0,54,1:0:0:54,1:1940,36:-174.555,-16.2556,0,-171.988,-13.369,-171.687	1/1:80:0,80,0:0:0:80,0:2864,0:-257.982,-24.0824,0,-257.982,-24.0824,-257.982	1/1:126:0,126,0:0:0:126,0:4528,0:-407.6,-37.9298,0,-407.6,-37.9298,-407.6	2/2:1:0,0,1:0:0:0,1:0,36:-3.18762,-3.18762,-3.18762,-0.30103,-0.30103,0	1/2:91:0,38,53:0:0:38,53:1359,1857:-232.213,-121.495,-110.055,-111.046,0,-95.0919	1/2:42:0,19,23:0:0:19,23:676,797:-114.468,-59.3587,-53.6392,-55.4484,0,-48.5247	1/2:6:0,4,2:0:0:4,2:144,67:-16.5493,-4.76454,-3.56042,-12.0929,0,-11.4908	1/2:126:0,73,53:0:0:73,53:2624,1824:-340.438,-126.987,-105.012,-213.775,0,-197.821	1/2:58:0,33,25:0:0:33,25:1163,882:-158.484,-63.7733,-53.8393,-95.0421,0,-87.5164	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:7:0,4,3:0:0:4,3: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chr08	5143127	.	C	T	201117	PASS	AB=0.498458;ABP=3.06388;AC=152;AF=0.808511;AN=188;AO=6877;CIGAR=1X;DP=8200;DPB=8200;DPRA=88.1613;EPP=4584.19;EPPR=1111.01;GTI=1;LEN=1;MEANALT=1.02151;MQM=52.5446;MQMR=59.2173;NS=94;NUMALT=1;ODDS=2.57986;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244718;QR=46494;RO=1321;RPL=5116;RPP=3557.2;RPPR=402.537;RPR=1761;RUN=1;SAF=3582;SAP=29.019;SAR=3295;SRF=657;SRP=3.09085;SRR=664;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53:0:0:53:1904:-169.707,-15.9546,0	1/1:95:0,95:0:0:95:3420:-305.607,-28.5979,0	0/1:181:85,96:85:2994:96:3389:-249.05,0,-214.922	1/1:150:0,150:0:0:150:5335:-476.336,-45.1545,0	0/1:60:34,26:34:1203:26:932:-65.5614,0,-90.5108	0/1:46:23,23:23:820:23:824:-59.6298,0,-60.2646	1/1:93:0,93:0:0:93:3270:-291.826,-27.9958,0	1/1:171:0,171:0:0:171:6062:-541.783,-51.4761,0	1/1:171:0,171:0:0:171:6083:-543.35,-51.4761,0	1/1:129:1,128:1:27:128:4546:-404.943,-36.1383,0	1/1:58:0,58:0:0:58:2071:-183.262,-17.4597,0	1/1:159:0,159:0:0:159:5558:-495.358,-47.8638,0	1/1:120:0,120:0:0:120:4281:-383.532,-36.1236,0	1/1:94:0,94:0:0:94:3310:-293.973,-28.2968,0	1/1:120:0,120:0:0:120:4231:-377.908,-36.1236,0	1/1:131:0,131:0:0:131:4672:-418.295,-39.4349,0	1/1:77:1,76:1:36:76:2679:-237.081,-19.581,0	1/1:77:0,77:0:0:77:2727:-243.358,-23.1793,0	1/1:62:0,62:0:0:62:2204:-197.729,-18.6639,0	1/1:112:2,110:2:72:110:3944:-345.344,-26.8786,0	1/1:140:0,140:0:0:140:5010:-447.531,-42.1442,0	0/1:34:21,13:21:744:13:457:-30.7298,0,-56.9922	1/1:81:0,81:0:0:81:2900:-257.966,-24.3834,0	0/1:78:32,46:32:1140:46:1656:-125.335,0,-79.3728	1/1:75:0,75:0:0:75:2657:-237.801,-22.5773,0	0/1:144:71,73:71:2512:73:2586:-187.003,0,-182.927	0/1:140:67,73:67:2389:73:2615:-192.217,0,-173.099	1/1:54:0,54:0:0:54:1917:-171.427,-16.2556,0	1/1:144:0,144:0:0:144:5122:-458.772,-43.3483,0	1/1:67:3,64:3:108:64:2291:-195.246,-10.0938,0	0/1:89:49,40:49:1722:40:1432:-101.611,0,-128.208	1/1:3:0,3:0:0:3:108:-10.0632,-0.90309,0	1/1:6:0,6:0:0:6:216:-18.8243,-1.80618,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:3:0,3:0:0:3:108:-9.95456,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7621,-1.80618,0	1/1:307:0,307:0:0:307:10899:-975.754,-92.4162,0	0/1:65:29,36:29:1019:36:1292:-96.5532,0,-72.357	0/1:95:44,51:44:1527:51:1824:-135.369,0,-108.924	1/1:2:0,2:0:0:2:72:-6.81432,-0.60206,0	0/1:65:26,39:26:909:39:1387:-105.35,0,-62.55	0/1:34:16,18:16:572:18:644:-47.9759,0,-41.5784	0/1:92:47,45:47:1629:45:1616:-117.396,0,-119.187	0/1:99:52,47:52:1823:47:1688:-122.047,0,-134.51	1/1:119:2,117:2:72:117:4171:-360.236,-28.9858,0	0/1:75:33,42:33:1167:42:1508:-112.667,0,-82.7454	0/1:91:45,46:45:1569:46:1616:-118.098,0,-114.076	0/1:123:55,68:55:1946:68:2448:-180.404,0,-138.179	1/1:76:0,76:0:0:76:2672:-239.59,-22.8783,0	1/1:100:0,100:0:0:100:3551:-318.527,-30.103,0	1/1:89:1,88:1:36:88:3156:-278.302,-23.1934,0	0/1:4:2,2:2:72:2:72:-5.60367,0,-5.6326	0/1:108:65,43:65:2248:43:1525:-104.418,0,-169.834	0/1:40:23,17:23:815:17:612:-43.1108,0,-61.6109	0/1:6:2,4:2:72:4:144:-11.4919,0,-5.03054	0/1:92:38,54:38:1345:54:1924:-144.521,0,-92.7104	0/1:41:23,18:23:820:18:642:-45.471,0,-61.7757	1/1:6:0,6:0:0:6:216:-19.7171,-1.80618,0	0/1:5:3,2:3:108:2:72:-5.32966,0,-8.29072	1/1:83:0,83:0:0:83:2911:-260.58,-24.9855,0	1/1:115:0,115:0:0:115:4064:-364.097,-34.6185,0	1/1:4:0,4:0:0:4:144:-12.1622,-1.20412,0	0/1:19:9,10:9:316:10:347:-25.7616,0,-23.0593	1/1:93:0,93:0:0:93:3340:-298.096,-27.9958,0	1/1:67:1,66:1:36:66:2312:-203.521,-16.5707,0	1/1:73:0,73:0:0:73:2620:-234.096,-21.9752,0	1/1:157:2,155:2:72:155:5522:-484.056,-40.425,0	0/1:95:53,42:53:1900:42:1485:-104.915,0,-142.596	1/1:50:0,50:0:0:50:1796:-160.524,-15.0515,0	1/1:95:0,94:0:0:94:3349:-299.612,-28.2968,0	1/1:109:0,109:0:0:109:3848:-344.863,-32.8123,0	1/1:8:0,8:0:0:8:288:-26.2369,-2.40824,0	1/1:60:0,60:0:0:60:2147:-191.968,-18.0618,0	0/1:81:46,35:46:1605:35:1243:-87.1558,0,-120.183	1/1:167:1,166:1:36:166:5882:-523.094,-46.6828,0	1/1:112:0,112:0:0:112:3999:-358.027,-33.7154,0	1/1:114:2,112:2:68:112:4001:-352.566,-27.8597,0	1/1:91:2,89:2:72:89:3187:-278.819,-20.557,0	0/1:8:6,2:6:212:2:72:-4.41129,0,-17.0166	1/1:85:0,85:0:0:85:3039:-271.619,-25.5876,0	0/1:93:36,57:36:1278:57:2039:-153.633,0,-87.3001	1/1:134:0,134:0:0:134:4780:-427.638,-40.338,0	1/1:117:0,117:0:0:117:4162:-372.963,-35.2205,0	1/1:115:0,115:0:0:115:4108:-366.625,-34.6185,0	0/1:154:72,82:72:2523:82:2913:-213.595,0,-180.668	1/1:241:0,241:0:0:241:8596:-764.304,-72.5482,0	1/1:48:0,48:0:0:48:1719:-154.119,-14.4494,0	0/1:106:50,56:50:1761:56:1982:-145.661,0,-126.843	1/1:131:0,130:0:0:130:4627:-411.913,-39.1339,0	0/1:48:28,20:28:978:20:716:-49.9227,0,-73.8812	0/1:69:39,30:39:1374:30:1076:-75.0579,0,-103.177	0/1:114:77,37:77:2675:37:1312:-83.6582,0,-206.545	1/1:4:0,4:0:0:4:144:-13.2923,-1.20412,0	1/1:182:1,181:1:36:181:6464:-575.582,-51.1892,0
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chr08	5284504	.	A	T	99040.9	PASS	AB=0.482481;ABP=8.6405;AC=151;AF=0.811828;AN=186;AO=4532;CIGAR=1X;DP=5630;DPB=5630;DPRA=0;EPP=9731.53;EPPR=2378.61;GTI=0;LEN=1;MEANALT=1;MQM=59.9879;MQMR=59.959;NS=93;NUMALT=1;ODDS=0.373221;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162222;QR=39258;RO=1098;RPL=4519;RPP=9731.53;RPPR=2378.61;RPR=13;RUN=1;SAF=4532;SAP=9844.12;SAR=0;SRF=1098;SRP=2387.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:62:0,62:0:0:62:2217:-199.793,-18.6639,0	0/1:82:41,41:41:1457:41:1463:-107.281,0,-106.74	1/1:160:0,160:0:0:160:5732:-515.996,-48.1648,0	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:102:0,102:0:0:102:3649:-328.613,-30.7051,0	1/1:82:0,82:0:0:82:2918:-262.852,-24.6845,0	1/1:46:0,46:0:0:46:1648:-148.608,-13.8474,0	1/1:63:0,63:0:0:63:2240:-201.861,-18.9649,0	1/1:37:0,37:0:0:37:1326:-119.642,-11.1381,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:53:0,53:0:0:53:1900:-171.277,-15.9546,0	1/1:39:1,38:1:36:38:1368:-119.823,-8.1419,0	1/1:41:0,41:0:0:41:1463:-131.965,-12.3422,0	1/1:16:0,16:0:0:16:567:-51.3604,-4.81648,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:94:0,94:0:0:94:3358:-302.437,-28.2968,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	0/1:59:33,26:33:1184:26:917:-65.0838,0,-89.1075	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:37:16,21:16:576:21:752:-56.8681,0,-41.0369	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:157:90,67:90:3190:67:2403:-169.264,0,-240.061	0/1:118:64,54:64:2300:54:1940:-139.355,0,-171.739	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:141:0,141:0:0:141:5032:-453.024,-42.4452,0	1/1:74:3,71:3:108:71:2539:-218.685,-12.2011,0	0/1:56:26,30:26:936:30:1080:-80.6556,0,-67.7018	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:173:0,173:0:0:173:6197:-557.696,-52.0782,0	0/1:87:49,38:49:1756:38:1368:-97.2312,0,-130.944	0/1:30:15,15:15:540:15:536:-39.5439,0,-39.9056	.:.:.:.:.:.:.:.	0/1:111:60,51:60:2145:51:1836:-132.106,0,-159.901	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:61:39,22:39:1381:22:792:-53.2428,0,-106.224	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	1/1:46:0,46:0:0:46:1630:-146.987,-13.8474,0	0/1:84:40,44:40:1436:44:1580:-117.205,0,-104.251	0/1:35:19,16:19:684:16:576:-41.6389,0,-51.3543	0/1:130:59,71:59:2097:71:2525:-188.367,0,-149.864	1/1:74:0,74:0:0:74:2640:-237.847,-22.2762,0	1/1:71:0,71:0:0:71:2544:-229.21,-21.3731,0	1/1:134:0,134:0:0:134:4783:-430.628,-40.338,0	0/1:9:3,6:3:104:6:202:-15.7994,0,-6.99354	0/1:87:40,47:40:1421:47:1688:-126.017,0,-101.996	0/1:57:28,29:28:989:29:1036:-76.3952,0,-72.1633	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:76:41,35:41:1464:35:1256:-90.467,0,-109.17	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	1/1:48:0,48:0:0:48:1699:-153.195,-14.4494,0	1/1:84:0,84:0:0:84:3012:-271.31,-25.2865,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:154:78,76:78:2777:76:2716:-198.325,0,-203.811	1/1:129:0,129:0:0:129:4621:-416.041,-38.8329,0	1/1:85:1,84:1:36:84:2987:-265.463,-21.9893,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:82:0,82:0:0:82:2933:-264.203,-24.6845,0	0/1:96:63,33:63:2268:33:1180:-77.6092,0,-175.483	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:104:0,104:0:0:104:3726:-335.541,-31.3071,0	0/1:87:31,56:31:1112:56:2016:-155.523,0,-74.2017	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	1/1:109:0,109:0:0:109:3897:-350.922,-32.8123,0	1/1:73:0,73:0:0:73:2614:-235.507,-21.9752,0	1/1:100:0,100:0:0:100:3588:-323.126,-30.103,0	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:73:33,40:33:1188:40:1432:-107.202,0,-85.2534	1/1:101:0,101:0:0:101:3602:-324.382,-30.404,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:45:0,45:0:0:45:1605:-144.738,-13.5464,0	0/1:26:10,16:10:360:16:576:-44.3482,0,-24.9175	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:68:36,32:36:1277:32:1148:-83.1598,0,-94.7611	1/1:55:0,55:0:0:55:1952:-175.952,-16.5567,0	0/1:24:11,13:11:396:13:459:-34.4194,0,-28.758	0/1:125:60,65:60:2160:65:2340:-173.23,0,-157.038	0/1:42:33,9:33:1184:9:320:-16.4991,0,-94.2251	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:47:0,47:0:0:47:1666:-150.226,-14.1484,0
chr08	5290190	.	A	G	198967	PASS	AB=0.549724;ABP=84.8556;AC=152;AF=0.808511;AN=188;AO=9146;CIGAR=1X;DP=10873;DPB=10873;DPRA=0;EPP=19863.3;EPPR=3744.46;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.9903;MQMR=59.989;NS=94;NUMALT=1;ODDS=4.23243;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=326410;QR=61590;RO=1723;RPL=0;RPP=19863.3;RPPR=3744.46;RPR=9146;RUN=1;SAF=9146;SAP=19863.3;SAR=0;SRF=1723;SRP=3744.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:1,56:1:36:56:1993:-176.044,-13.5604,0	1/1:153:0,153:0:0:153:5448:-490.448,-46.0576,0	0/1:117:56,61:56:1993:61:2174:-160.705,0,-144.422	1/1:266:0,266:0:0:266:9489:-853.968,-80.074,0	0/1:54:13,41:13:468:41:1468:-116.16,0,-26.204	0/1:79:29,50:29:1044:50:1792:-137.781,0,-70.4934	1/1:236:0,236:0:0:236:8394:-755.463,-71.0431,0	1/1:106:0,106:0:0:106:3782:-340.58,-31.9092,0	1/1:109:0,109:0:0:109:3870:-348.494,-32.8123,0	1/1:70:0,69:0:0:69:2476:-222.734,-20.7711,0	1/1:111:0,111:0:0:111:3976:-358.03,-33.4143,0	1/1:96:0,96:0:0:96:3404:-306.573,-28.8989,0	1/1:70:0,70:0:0:70:2501:-225.341,-21.0721,0	1/1:115:0,115:0:0:115:4127:-371.612,-34.6185,0	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	1/1:81:0,81:0:0:81:2889:-260.245,-24.3834,0	1/1:99:0,99:0:0:99:3558:-320.427,-29.802,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:57:0,57:0:0:57:2029:-182.866,-17.1587,0	1/1:336:0,336:0:0:336:11971:-1077.24,-101.146,0	1/1:166:0,166:0:0:166:5925:-533.359,-49.971,0	0/1:109:62,47:62:2232:47:1654:-116.331,0,-168.331	1/1:167:0,167:0:0:167:5937:-534.439,-50.272,0	0/1:159:62,97:62:2220:97:3472:-264.828,0,-152.201	1/1:103:0,102:0:0:102:3638:-327.262,-30.7051,0	0/1:239:105,134:105:3764:134:4777:-358.138,0,-267.013	0/1:93:48,45:48:1720:45:1610:-117.194,0,-127.09	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:287:0,287:0:0:287:10214:-919.186,-86.3956,0	1/1:124:1,123:1:36:123:4393:-391.943,-33.7294,0	0/1:182:84,98:84:2986:98:3482:-258.802,0,-214.182	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:27:0,27:0:0:27:949:-85.7228,-8.12781,0	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:230:0,230:0:0:230:8222:-739.99,-69.2369,0	0/1:153:57,96:57:2048:96:3437:-263.484,0,-138.534	0/1:78:31,47:31:1101:47:1674:-127.466,0,-75.918	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:219:96,123:96:3436:123:4376:-328.087,0,-243.528	0/1:56:24,32:24:856:32:1152:-87.1325,0,-60.5034	0/1:163:67,96:67:2392:96:3436:-260.385,0,-166.47	0/1:121:68,53:68:2448:53:1904:-135.213,0,-184.15	1/1:76:0,76:0:0:76:2736:-246.482,-22.8783,0	0/1:100:37,63:37:1328:63:2233:-171.13,0,-89.7192	0/1:159:69,90:69:2457:90:3164:-237.118,0,-173.519	0/1:183:66,117:66:2357:117:4192:-322.373,0,-157.298	1/1:139:0,139:0:0:139:4973:-447.716,-41.8432,0	1/1:134:0,134:0:0:134:4782:-430.534,-40.338,0	1/1:259:0,259:0:0:259:9213:-829.139,-77.9668,0	0/1:17:13,4:13:449:4:144:-8.19611,0,-35.62	0/1:207:92,115:92:3287:115:4085:-305.522,0,-233.63	0/1:52:20,32:20:697:32:1133:-86.6231,0,-47.3971	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:143:61,81:61:2181:81:2878:-216.144,0,-153.448	0/1:79:29,50:29:1040:50:1773:-136.07,0,-70.133	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:26:15,11:15:521:11:392:-27.7933,0,-39.3895	1/1:155:0,155:0:0:155:5568:-501.241,-46.6597,0	1/1:168:2,166:2:72:166:5957:-529.397,-43.7363,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:170:65,105:65:2302:105:3738:-285.444,0,-156.263	1/1:161:0,161:0:0:161:5761:-518.604,-48.4658,0	1/1:86:0,86:0:0:86:3064:-275.988,-25.8886,0	1/1:92:0,92:0:0:92:3298:-297.039,-27.6948,0	1/1:208:1,207:1:36:207:7379:-660.558,-59.016,0	0/1:96:60,36:60:2133:36:1296:-88.0451,0,-163.338	1/1:55:1,54:1:36:54:1901:-167.765,-12.9584,0	1/1:122:0,122:0:0:122:4349:-391.577,-36.7257,0	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:145:0,144:0:0:144:5149:-463.19,-43.3483,0	0/1:71:28,43:28:1004:43:1529:-116.528,0,-69.3027	1/1:221:0,221:0:0:221:7867:-708.046,-66.5276,0	1/1:188:0,188:0:0:188:6681:-601.363,-56.5936,0	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	1/1:88:0,88:0:0:88:3144:-283.186,-26.4906,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:108:0,108:0:0:108:3880:-349.393,-32.5112,0	0/1:105:64,41:64:2300:41:1468:-100.808,0,-175.653	1/1:279:0,279:0:0:279:9947:-895.168,-83.9874,0	1/1:136:2,134:2:72:134:4803:-425.586,-34.1034,0	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	0/1:120:58,62:58:2088:62:2220:-163.941,0,-152.066	1/1:169:0,169:0:0:169:6053:-544.871,-50.8741,0	1/1:68:0,68:0:0:68:2433:-219.224,-20.47,0	0/1:105:43,62:43:1548:62:2201:-166.747,0,-108.005	1/1:101:0,101:0:0:101:3604:-324.559,-30.404,0	0/1:71:40,31:40:1421:31:1107:-78.567,0,-106.812	0/1:145:74,71:74:2641:71:2552:-186.281,0,-194.286	0/1:93:62,31:62:2228:31:1097:-71.0422,0,-172.788	1/1:139:0,139:0:0:139:4935:-444.299,-41.8432,0	1/1:147:0,147:0:0:147:5246:-472.275,-44.2514,0
chr08	5290989	.	AACA	GACA,GACG	197488	PASS	AB=0.524626,0.469451;ABP=19.9083,29.0138;AC=152,36;AF=0.808511,0.191489;AN=188;AO=7479,1526;CIGAR=1X3M,1X2M1X;DP=9050;DPB=9050.5;DPRA=0,1.23308;EPP=16243.5,3316.68;EPPR=13.8677;GTI=3;LEN=1,4;MEANALT=1.81915,2.46667;MQM=59.9925,59.8886;MQMR=53.6;NS=94;NUMALT=2;ODDS=0.0883092;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=1;QA=267624,54042;QR=180;RO=5;RPL=7479,1526;RPP=16243.5,3316.68;RPPR=13.8677;RPR=0,0;RUN=1,1;SAF=0,0;SAP=16243.5,3316.68;SAR=7479,1526;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,23,0:0:0:23,0:828,0:-74.4843,-6.92369,0,-74.4843,-6.92369,-74.4843	1/1:209:0,209,0:0:0:209,0:7480,0:-673.243,-62.9153,0,-673.243,-62.9153,-673.243	1/2:93:0,43,50:0:0:43,50:1540,1735:-266.976,-141.38,-128.435,-125.949,0,-110.897	1/1:244:0,240,4:0:0:240,4:8586,132:-772.406,-72.2472,0,-761.735,-61.2462,-760.531	1/2:41:0,22,19:0:0:22,19:784,684:-120.074,-56.1708,-49.5481,-64.2613,0,-58.5417	1/2:34:0,19,15:0:0:19,15:684,521:-98.517,-42.699,-36.9794,-56.1708,0,-51.6553	1/1:101:0,101,0:0:0:101,0:3615,0:-325.555,-30.404,0,-325.555,-30.404,-325.555	1/1:136:0,136,0:0:0:136,0:4848,0:-436.473,-40.9401,0,-436.473,-40.9401,-436.473	1/1:67:0,67,0:0:0:67,0:2404,0:-216.616,-20.169,0,-216.616,-20.169,-216.616	1/1:84:0,84,0:0:0:84,0:3004,0:-270.592,-25.2865,0,-270.592,-25.2865,-270.592	1/1:48:0,48,0:0:0:48,0:1709,0:-154.094,-14.4494,0,-154.094,-14.4494,-154.094	1/1:93:0,93,0:0:0:93,0:3340,0:-300.816,-27.9958,0,-300.816,-27.9958,-300.816	1/1:81:0,81,0:0:0:81,0:2904,0:-261.595,-24.3834,0,-261.595,-24.3834,-261.595	1/1:90:0,90,0:0:0:90,0:3232,0:-291.101,-27.0927,0,-291.101,-27.0927,-291.101	1/1:87:0,87,0:0:0:87,0:3123,0:-281.295,-26.1896,0,-281.295,-26.1896,-281.295	1/1:57:0,57,0:0:0:57,0:2048,0:-184.592,-17.1587,0,-184.592,-17.1587,-184.592	1/1:100:0,100,0:0:0:100,0:3584,0:-322.767,-30.103,0,-322.767,-30.103,-322.767	1/1:72:0,72,0:0:0:72,0:2576,0:-232.09,-21.6742,0,-232.09,-21.6742,-232.09	1/1:41:0,40,0:0:0:40,0:1432,0:-128.925,-12.0412,0,-128.925,-12.0412,-128.925	1/1:125:0,125,0:0:0:125,0:4469,0:-402.38,-37.6288,0,-402.38,-37.6288,-402.38	1/1:175:0,173,0:0:0:173,0:6200,0:-557.766,-52.0782,0,-557.766,-52.0782,-557.766	1/2:59:0,33,26:0:0:33,26:1188,935:-173.578,-76.6426,-66.7086,-97.2946,0,-89.4678	1/1:81:0,81,0:0:0:81,0:2900,0:-261.235,-24.3834,0,-261.235,-24.3834,-261.235	1/2:107:0,57,50:0:0:57,50:2035,1763:-309.807,-143.898,-126.739,-166.263,0,-151.211	1/1:49:0,49,0:0:0:49,0:1760,0:-158.684,-14.7505,0,-158.684,-14.7505,-158.684	1/2:285:0,145,137:0:0:145,137:5159,4883:-818.491,-398.054,-354.405,-420.473,0,-379.232	1/2:157:0,89,65:0:0:89,65:3196,2307:-448.727,-188.012,-161.22,-260.766,0,-241.199	1/1:69:0,69,0:0:0:69,0:2461,0:-221.743,-20.7711,0,-221.743,-20.7711,-221.743	1/1:246:0,245,0:0:0:245,0:8743,0:-786.504,-73.7524,0,-786.504,-73.7524,-786.504	1/1:96:1,89,6:1:36:89,6:3188,216:-283.545,-23.8543,0,-266.222,-9.16717,-267.353	1/2:150:0,83,67:0:0:83,67:2980,2361:-435.658,-192.567,-167.582,-243.446,0,-223.277	1/2:10:0,7,3:0:0:7,3:252,108:-29.734,-9.17208,-7.06487,-20.9217,0,-20.0187	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:283:0,280,2:0:0:280,2:10059,72:-904.834,-84.2884,0,-898.959,-78.4136,-898.357	1/2:194:0,83,111:0:0:83,111:2965,3956:-564.559,-322.819,-297.833,-242.097,0,-208.683	1/2:52:0,32,20:0:0:32,20:1140,719:-151.9,-58.9814,-49.3484,-93.2762,0,-87.2556	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:177:0,81,95:0:0:81,95:2875,3324:-504.782,-270.53,-246.146,-234.353,0,-205.755	1/2:27:0,12,14:0:0:12,14:432,504:-76.3607,-41.1097,-37.4973,-35.3043,0,-31.0899	1/2:82:0,50,32:0:0:50,32:1796,1127:-238.612,-92.0955,-77.044,-146.871,0,-137.238	1/2:125:0,60,63:0:0:60,63:2156,2262:-360.434,-184.547,-166.485,-175.914,0,-156.949	1/1:74:1,70,0:1:36:70,0:2499,0:-221.564,-18.1347,0,-221.865,-21.0721,-224.802	1/2:54:0,36,18:0:0:36,18:1288,646:-158.081,-53.0529,-42.2158,-105.387,0,-99.968	1/2:64:0,31,33:0:0:31,33:1112,1163:-185.747,-95.043,-85.711,-91.0594,0,-81.1254	1/2:181:0,83,96:0:0:83,96:2968,3383:-517.502,-275.489,-250.503,-242.066,0,-213.167	1/1:115:0,115,0:0:0:115,0:4107,0:-369.815,-34.6185,0,-369.815,-34.6185,-369.815	1/1:193:0,192,1:0:0:192,1:6875,34:-618.478,-57.7978,0,-615.72,-54.6999,-615.419	1/1:133:0,131,0:0:0:131,0:4683,0:-421.271,-39.4349,0,-421.271,-39.4349,-421.271	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:62:0,43,19:0:0:43,19:1527,672:-179.51,-55.0862,-42.1419,-124.778,0,-119.058	1/2:35:0,17,18:0:0:17,18:612,644:-102.81,-52.8723,-47.7548,-50.2959,0,-44.8774	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:89:0,48,40:0:0:48,40:1724,1402:-254.717,-114.075,-99.6257,-140.636,0,-128.595	1/2:51:0,33,18:0:0:33,18:1176,632:-147.649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chr08	5291079	.	T	A	21828.3	PASS	AB=0.508681;ABP=4.78229;AC=35;AF=0.18617;AN=188;AO=1380;CIGAR=1X;DP=7032;DPB=7032;DPRA=1.08693;EPP=2982.3;EPPR=12167.8;GTI=0;LEN=1;MEANALT=1.02703;MQM=41.4232;MQMR=55.0019;NS=94;NUMALT=1;ODDS=1.11233;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49264;QR=202140;RO=5650;RPL=2;RPP=2982.3;RPPR=12167.8;RPR=1378;RUN=1;SAF=1380;SAP=2999.64;SAR=0;SRF=5650;SRP=12271.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.243	0/0:60:60,0:60:2143:0:0:0,-18.0618,-192.554	0/1:117:62,55:62:2219:55:1968:-136.683,0,-164.139	0/0:174:174,0:174:6232:0:0:0,-52.3792,-560.046	0/1:16:12,3:12:417:3:108:-4.91557,0,-32.9505	0/1:27:20,7:20:712:7:252:-14.2274,0,-56.1213	0/0:78:78,0:78:2792:0:0:0,-23.4803,-250.955	0/0:94:94,0:94:3349:0:0:0,-28.2968,-301.278	0/0:104:104,0:104:3711:0:0:0,-31.3071,-333.553	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.695	0/0:74:74,0:74:2652:0:0:0,-22.2762,-237.966	0/0:135:135,0:135:4831:0:0:0,-40.639,-433.186	0/0:79:79,0:79:2831:0:0:0,-23.7814,-254.399	0/0:60:60,0:60:2156:0:0:0,-18.0618,-193.792	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.136	0/0:67:67,0:67:2400:0:0:0,-20.169,-215.019	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.863	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.0022	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.4121	0/0:92:92,0:92:3299:0:0:0,-27.6948,-296.573	0/0:106:106,0:106:3784:0:0:0,-31.9092,-339.689	0/1:54:22,32:22:792:32:1133:-83.0774,0,-55.3164	0/0:104:102,2:102:3656:2:72:0,-24.652,-320.948	0/1:19:8,11:8:288:11:388:-28.2578,0,-20.5106	0/0:65:65,0:65:2332:0:0:0,-19.5669,-209.791	0/1:282:152,130:152:5460:130:4626:-323.901,0,-406.138	0/1:217:88,129:88:3168:129:4620:-332.447,0,-219.258	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.142	0/0:149:149,0:149:5322:0:0:0,-44.8535,-478.805	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.336	0/1:88:48,40:48:1716:40:1421:-98.4343,0,-127.869	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.617	0/1:4:2,2:2:72:2:72:-5.4092,0,-5.62556	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2403	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5648	0/0:228:227,0:227:8143:0:0:0,-68.3338,-731.693	0/1:109:52,57:52:1851:57:2023:-142.334,0,-132.832	0/1:58:37,21:37:1332:21:752:-48.1607,0,-102.585	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/1:75:41,34:41:1468:34:1216:-82.9698,0,-109.598	0/1:51:29,22:29:1040:22:788:-52.3785,0,-78.4374	0/1:54:31,23:31:1112:23:828:-54.4657,0,-83.9382	0/1:68:29,39:29:1036:39:1404:-101.742,0,-72.9812	0/0:98:97,1:97:3461:1:36:0,-25.9982,-307.242	0/1:78:50,28:50:1792:28:996:-64.5519,0,-137.973	0/1:70:24,46:24:864:46:1632:-120.752,0,-56.7349	0/1:91:56,35:56:2004:35:1256:-82.4689,0,-153.017	0/0:86:86,0:86:3083:0:0:0,-25.8886,-277.298	0/0:78:78,0:78:2788:0:0:0,-23.4803,-250.712	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.68	0/1:13:4,9:4:140:9:324:-24.8087,0,-9.02303	0/1:116:62,54:62:2194:54:1932:-131.609,0,-162.338	0/1:52:26,26:26:932:26:932:-67.0409,0,-68.4942	0/1:10:7,3:7:252:3:108:-6.73565,0,-19.9805	0/1:98:31,67:31:1112:67:2388:-176.927,0,-70.4566	0/1:51:27,24:27:960:24:852:-58.7711,0,-70.8827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2561	0/1:20:15,5:15:531:5:180:-10.2148,0,-42.0666	0/0:48:48,0:48:1719:0:0:0,-14.4494,-154.41	0/0:89:89,0:89:3187:0:0:0,-26.7917,-286.488	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0679	0/1:166:66,100:66:2372:100:3566:-264.646,0,-163.215	0/0:135:135,0:135:4840:0:0:0,-40.639,-434.413	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.287	0/0:73:73,0:73:2620:0:0:0,-21.9752,-235.422	0/0:147:147,0:147:5247:0:0:0,-44.2514,-471.841	0/1:127:49,78:49:1756:78:2781:-205.225,0,-119.291	0/0:53:53,0:53:1887:0:0:0,-15.9546,-169.255	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.549	0/0:52:52,0:52:1864:0:0:0,-15.6536,-167.745	0/0:13:13,0:13:464:0:0:0,-3.91339,-41.9848	0/0:100:100,0:100:3575:0:0:0,-30.103,-320.978	0/1:72:48,24:48:1707:24:860:-53.5566,0,-131.759	0/0:91:91,0:91:3267:0:0:0,-27.3937,-293.523	0/0:96:96,0:96:3436:0:0:0,-28.8989,-308.886	0/0:40:40,0:40:1423:0:0:0,-12.0412,-127.425	0/0:72:72,0:72:2588:0:0:0,-21.6742,-232.689	0/1:8:5,3:5:180:3:104:-7.02769,0,-14.1302	0/0:72:72,0:72:2566:0:0:0,-21.6742,-230.504	0/1:92:40,52:40:1416:52:1842:-131.212,0,-99.4386	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.401	0/0:63:63,0:63:2236:0:0:0,-18.9649,-200.408	0/0:69:69,0:69:2462:0:0:0,-20.7711,-221.396	0/1:56:33,23:33:1175:23:828:-55.9549,0,-89.0332	0/0:133:133,0:133:4716:0:0:0,-40.037,-422.626	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0088	0/1:95:54,41:54:1923:41:1460:-97.7711,0,-144.307	0/0:81:81,0:81:2912:0:0:0,-24.3834,-261.751	0/1:43:21,22:21:752:22:788:-55.3237,0,-54.9683	0/1:102:48,54:48:1724:54:1936:-136.989,0,-124.288	0/1:108:30,78:30:1076:78:2792:-211.245,0,-64.5292	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.034	0/0:127:127,0:127:4556:0:0:0,-38.2308,-409.779
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chr08	5291262	.	C	A	66338.8	PASS	AB=0.504107;ABP=3.8664;AC=37;AF=0.198925;AN=186;AO=2974;CIGAR=1X;DP=16337;DPB=16337;DPRA=1.21531;EPP=6434.94;EPPR=28846.9;GTI=1;LEN=1;MEANALT=1.1;MQM=59.9839;MQMR=59.9937;NS=93;NUMALT=1;ODDS=3.63689;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105794;QR=473543;RO=13355;RPL=1063;RPP=528.066;RPPR=230.562;RPR=1911;RUN=1;SAF=1062;SAP=530.545;SAR=1912;SRF=6074;SRP=239.888;SRR=7281;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:551:0:0:0,-4.81648,-49.9145	0/0:158:158,0:158:5593:0:0:0,-47.5627,-503.493	0/1:107:52,55:52:1831:55:1949:-143.474,0,-132.86	0/0:571:568,2:568:20232:2:72:0,-165.11,-1813.56	0/1:67:33,34:33:1172:34:1206:-88.676,0,-85.6185	0/1:36:13,23:13:440:23:816:-62.9246,0,-29.0849	0/0:264:262,2:262:9299:2:72:0,-72.6352,-830.046	0/0:153:153,0:153:5416:0:0:0,-46.0576,-487.572	0/0:89:89,0:89:3148:0:0:0,-26.7917,-283.546	0/0:241:240,1:240:8503:1:36:0,-68.95,-761.679	0/0:172:172,0:172:6113:0:0:0,-51.7772,-550.274	0/0:89:89,0:89:3084:0:0:0,-26.7917,-277.79	0/0:72:72,0:72:2537:0:0:0,-21.6742,-228.581	0/0:163:163,0:163:5797:0:0:0,-49.0679,-521.847	0/0:182:182,0:182:6431:0:0:0,-54.7875,-578.885	0/0:135:134,1:134:4735:1:36:0,-37.0408,-422.714	0/0:91:91,0:91:3212:0:0:0,-27.3937,-289.304	0/0:68:68,0:68:2410:0:0:0,-20.47,-217.156	0/0:43:43,0:43:1522:0:0:0,-12.9443,-137.272	0/0:435:434,0:434:15436:0:0:0,-130.647,-1388.6	0/0:313:313,0:313:11084:0:0:0,-94.2224,-997.463	0/1:181:65,116:65:2290:116:4131:-317.489,0,-151.872	0/0:207:205,2:205:7356:2:63:0,-56.3301,-656.103	0/1:230:117,113:117:4137:113:4021:-292.842,0,-303.28	0/0:163:163,0:163:5796:0:0:0,-49.0679,-521.759	0/1:420:237,183:237:8429:183:6517:-460.18,0,-632.184	0/1:432:213,219:213:7626:219:7797:-571.718,0,-556.331	0/0:107:107,0:107:3763:0:0:0,-32.2102,-338.872	0/0:541:541,0:541:19172:0:0:0,-162.857,-1725.04	0/0:183:180,3:180:6418:3:108:0,-45.0133,-567.632	0/1:267:137,130:137:4846:130:4628:-336.309,0,-355.919	0/1:15:6,9:6:212:9:320:-24.6269,0,-14.9093	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:553:552,1:552:19525:1:25:0,-163.975,-1754.31	0/1:283:144,139:144:5114:139:4941:-359.65,0,-375.212	0/1:78:42,34:42:1477:34:1215:-86.4366,0,-110.004	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:208:93,115:93:3278:115:4105:-307.021,0,-232.629	0/1:82:41,41:41:1460:41:1464:-107.372,0,-107.012	0/1:355:186,169:186:6602:169:6028:-435.76,0,-486.622	0/1:210:105,105:105:3756:105:3752:-274.664,0,-275.024	0/0:162:161,1:161:5648:1:36:0,-45.1686,-504.851	0/1:159:112,47:112:3964:47:1692:-104.703,0,-309.087	0/1:102:51,51:51:1807:51:1794:-131.034,0,-132.206	0/1:403:199,204:199:7057:204:7239:-530.254,0,-513.88	0/0:221:221,0:221:7869:0:0:0,-66.5276,-708.241	0/0:231:231,0:231:8211:0:0:0,-69.5379,-739.005	0/0:222:221,1:221:7814:1:36:0,-63.2304,-699.695	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:101:42,59:42:1499:59:2098:-158.684,0,-104.8	0/1:65:51,14:51:1779:14:495:-25.3161,0,-140.822	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:246:121,125:121:4278:125:4439:-325.628,0,-311.149	0/1:96:42,54:42:1490:54:1924:-144.537,0,-105.494	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:22:15,7:15:540:7:229:-14.3069,0,-42.3139	0/0:199:199,0:199:7064:0:0:0,-59.905,-635.826	0/0:229:227,2:227:8053:2:72:0,-62.1899,-718.046	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/1:286:154,132:154:5429:132:4699:-336.976,0,-402.648	0/0:449:445,4:445:15772:4:144:0,-121.849,-1405.87	0/0:137:137,0:137:4833:0:0:0,-41.2411,-435.125	0/0:170:170,0:170:6049:0:0:0,-51.1751,-544.516	0/0:312:307,5:307:10878:5:176:0,-77.7363,-962.743	0/1:232:65,166:65:2287:166:5881:-459.506,0,-136.192	0/0:131:131,0:131:4692:0:0:0,-39.4349,-422.44	0/0:100:100,0:100:3543:0:0:0,-30.103,-319.079	0/0:152:152,0:152:5376:0:0:0,-45.7566,-483.977	0/0:37:36,1:36:1287:1:36:0,-7.53983,-112.535	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.541	0/1:68:30,38:30:1048:38:1355:-101.78,0,-74.1573	0/0:384:383,0:383:13661:0:0:0,-115.294,-1228.92	0/0:285:285,0:285:10141:0:0:0,-85.7935,-912.623	0/0:64:64,0:64:2258:0:0:0,-19.2659,-203.474	0/0:69:69,0:69:2424:0:0:0,-20.7711,-218.413	0/1:15:8,7:8:284:7:248:-18.1487,0,-21.3879	0/0:157:156,1:156:5550:1:36:0,-43.6634,-496.029	0/1:161:86,75:86:3048:75:2672:-192.26,0,-226.086	0/0:315:315,0:315:11252:0:0:0,-94.8244,-1012.57	0/0:216:216,0:216:7614:0:0:0,-65.0225,-685.305	0/0:143:143,0:143:5052:0:0:0,-43.0473,-454.828	0/1:181:81,100:81:2859:100:3569:-266.929,0,-203.06	0/0:374:373,0:373:13162:0:0:0,-112.284,-1184.09	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/1:103:54,49:54:1897:49:1752:-126.958,0,-140	0/0:92:92,0:92:3228:0:0:0,-27.6948,-290.745	0/1:109:56,52:56:1999:52:1851:-133.998,0,-147.312	0/1:289:153,136:153:5437:136:4848:-349.479,0,-402.464	0/1:223:86,137:86:3056:137:4847:-369.257,0,-208.141	0/0:200:200,0:200:7104:0:0:0,-60.206,-639.421	0/0:267:267,0:267:9456:0:0:0,-80.375,-851.007
chr08	5293699	.	C	T	91519.9	PASS	AB=0.503629;ABP=3.2152;AC=153;AF=0.81383;AN=188;AO=4194;CIGAR=1X;DP=5093;DPB=5093;DPRA=0;EPP=9023.51;EPPR=1929.19;GTI=1;LEN=1;MEANALT=1;MQM=59.9907;MQMR=60;NS=94;NUMALT=1;ODDS=3.54784;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149720;QR=32116;RO=899;RPL=10;RPP=9023.51;RPPR=1929.19;RPR=4184;RUN=1;SAF=0;SAP=9110.17;SAR=4194;SRF=0;SRP=1955.16;SRR=899;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:51:1,50:1:32:50:1777:-157.012,-12.1532,0	0/1:86:34,52:34:1209:52:1845:-140.44,0,-83.2256	1/1:221:0,221:0:0:221:7921:-712.911,-66.5276,0	0/1:35:22,13:22:788:13:468:-31.9236,0,-60.7087	0/1:31:18,13:18:644:13:468:-33.1277,0,-48.9587	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:60:0,60:0:0:60:2099:-189.175,-18.0618,0	1/1:85:0,85:0:0:85:3033:-273.199,-25.5876,0	1/1:19:1,18:1:36:18:640:-54.331,-2.1213,0	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	1/1:38:0,38:0:0:38:1330:-119.996,-11.4391,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:40:0,40:0:0:40:1425:-128.545,-12.0412,0	1/1:33:0,33:0:0:33:1180:-106.19,-9.93399,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:88:0,88:0:0:88:3155:-284.174,-26.4906,0	1/1:122:1,121:1:36:121:4302:-383.758,-33.1274,0	0/1:30:24,6:24:864:6:201:-9.38614,0,-69.0517	1/1:101:0,101:0:0:101:3594:-323.665,-30.404,0	0/1:25:7,18:7:252:18:644:-50.7648,0,-15.5032	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:171:81,90:81:2873:90:3216:-238.187,0,-207.331	0/1:99:47,52:47:1688:52:1862:-138.057,0,-122.405	1/1:30:0,30:0:0:30:1065:-96.1598,-9.0309,0	1/1:124:0,124:0:0:124:4444:-400.122,-37.3277,0	1/1:73:3,70:3:108:70:2503:-215.447,-11.9,0	0/1:140:62,78:62:2216:78:2803:-210.365,0,-157.561	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:10:0,10:0:0:10:354:-32.1995,-3.0103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:165:0,165:0:0:165:5915:-532.457,-49.67,0	0/1:74:49,25:49:1756:25:892:-58.3235,0,-136.048	0/1:27:15,12:15:540:12:420:-30.0056,0,-40.8087	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:76:33,43:33:1184:43:1525:-114.664,0,-83.99	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:47:26,21:26:936:21:756:-54.2188,0,-70.4111	0/1:34:11,23:11:392:23:813:-63.2541,0,-25.385	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:38:12,26:12:413:26:921:-71.7661,0,-26.0587	0/1:31:16,15:16:572:15:532:-38.8812,0,-42.4815	0/1:104:49,55:49:1741:55:1946:-144.105,0,-125.665	1/1:20:1,19:1:36:19:684:-58.2921,-2.42233,0	1/1:155:0,155:0:0:155:5550:-499.62,-46.6597,0	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/1:52:26,26:26:932:26:936:-68.9059,0,-68.5453	0/1:29:18,11:18:648:11:396:-27.2529,0,-49.922	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:45:19,26:19:680:26:928:-70.2919,0,-47.9828	0/1:27:6,21:6:212:21:743:-59.0655,0,-11.297	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	1/1:45:0,45:0:0:45:1589:-143.298,-13.5464,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:119:45,74:45:1612:74:2636:-201.665,0,-109.547	1/1:72:0,72:0:0:72:2569:-231.458,-21.6742,0	1/1:41:0,41:0:0:41:1411:-127.275,-12.3422,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:85:0,85:0:0:85:3020:-272.03,-25.5876,0	0/1:86:57,29:57:2029:29:1044:-68.3862,0,-156.992	1/1:15:1,14:1:36:14:479:-39.8359,-0.917175,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:101:47,54:47:1676:54:1906:-141.41,0,-120.723	1/1:102:0,102:0:0:102:3633:-327.175,-30.7051,0	1/1:181:0,181:0:0:181:6486:-583.822,-54.4864,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:47:1,46:1:36:46:1652:-145.37,-10.5501,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:88:0,88:0:0:88:3145:-283.274,-26.4906,0	0/1:47:18,29:18:644:29:1014:-77.4191,0,-44.1422	1/1:65:0,65:0:0:65:2317:-208.789,-19.567,0	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	1/1:120:0,120:0:0:120:4282:-385.559,-36.1236,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:38:23,15:23:824:15:536:-37.1357,0,-63.0442	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/1:48:31,17:31:1108:17:612:-40.964,0,-85.5816	0/1:61:46,15:46:1643:15:532:-29.8503,0,-129.795	1/1:99:0,99:0:0:99:3529:-317.819,-29.802,0	1/1:78:1,77:1:36:77:2760:-245.043,-19.8821,0
chr08	5293783	.	G	A	146962	PASS	AB=0.466436;ABP=22.8344;AC=149;AF=0.801075;AN=186;AO=5138;CIGAR=1X;DP=6240;DPB=6240;DPRA=8.46739;EPP=8907.02;EPPR=2042.91;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9644;MQMR=60;NS=93;NUMALT=1;ODDS=1.99673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183477;QR=39069;RO=1101;RPL=2120;RPP=343.821;RPPR=104.64;RPR=3018;RUN=1;SAF=2392;SAP=55.9726;SAR=2746;SRF=479;SRP=43.3413;SRR=622;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:97:51,46:51:1815:46:1656:-120.128,0,-134.431	1/1:70:0,70:0:0:70:2505:-225.211,-21.0721,0	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.0815	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	1/1:81:1,80:1:36:80:2843:-252.508,-20.7852,0	1/1:81:1,80:1:36:80:2853:-253.409,-20.7852,0	1/1:44:0,44:0:0:44:1546:-139.426,-13.2453,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:103:0,103:0:0:103:3704:-333.56,-31.0061,0	1/1:130:0,130:0:0:130:4621:-416.055,-39.1339,0	1/1:111:0,111:0:0:111:3974:-357.849,-33.4143,0	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0	1/1:80:0,80:0:0:80:2874:-258.896,-24.0824,0	1/1:93:0,93:0:0:93:3339:-300.726,-27.9958,0	1/1:143:0,143:0:0:143:5103:-459.414,-43.0473,0	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:136:1,135:1:36:135:4818:-430.176,-37.3418,0	1/1:89:0,89:0:0:89:3139:-282.735,-26.7917,0	0/1:25:20,5:20:711:5:169:-8.01578,0,-56.7899	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:47:26,21:26:920:21:756:-54.2188,0,-68.9686	1/1:33:0,33:0:0:33:1168:-105.427,-9.93399,0	0/1:105:42,63:42:1481:63:2258:-171.874,0,-101.974	0/1:89:45,44:45:1600:44:1551:-113.087,0,-117.499	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:112:0,112:0:0:112:4006:-360.728,-33.7154,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:53:22,31:22:792:31:1112:-84.4368,0,-55.6511	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:262:0,262:0:0:262:9385:-844.611,-78.8699,0	0/1:24:13,11:13:460:11:381:-27.3968,0,-34.5107	0/1:97:49,48:49:1733:48:1720:-125.886,0,-127.053	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:93:53,40:53:1900:40:1436:-101.542,0,-143.282	0/1:85:52,33:52:1837:33:1183:-81.1908,0,-140.021	0/1:74:40,34:40:1418:34:1205:-86.4777,0,-105.64	0/1:108:60,48:60:2115:48:1724:-122.934,0,-158.105	1/1:94:0,94:0:0:94:3345:-301.266,-28.2968,0	0/1:36:20,16:20:711:16:566:-40.4341,0,-53.4786	0/1:44:22,22:22:788:22:792:-58.3604,0,-57.9995	0/1:97:58,39:58:2076:39:1383:-95.5671,0,-157.911	1/1:31:0,31:0:0:31:1112:-100.39,-9.33193,0	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	1/1:49:0,49:0:0:49:1749:-157.665,-14.7505,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:59:25,34:25:900:34:1205:-90.9931,0,-63.5602	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:32:20,12:20:689:12:432:-29.543,0,-52.6956	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:168:1,167:1:36:167:5959:-532.82,-46.9748,0	.:.:.:.:.:.:.:.	0/1:56:33,23:33:1150:23:824:-57.6256,0,-86.9468	1/1:74:0,74:0:0:74:2637:-237.574,-22.2762,0	1/1:29:0,29:0:0:29:1038:-93.7339,-8.72987,0	1/1:33:0,33:0:0:33:1176:-106.147,-9.93399,0	1/1:82:1,81:1:36:81:2903:-257.906,-21.0862,0	0/1:39:26,13:26:936:13:468:-30.7195,0,-72.8193	1/1:57:1,56:1:36:56:1997:-176.405,-13.5604,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:132:1,131:1:36:131:4686:-418.302,-36.1377,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:46:22,24:22:788:24:854:-63.3331,0,-57.3974	1/1:87:0,87:0:0:87:3080:-277.427,-26.1896,0	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	1/1:73:0,73:0:0:73:2591:-233.351,-21.9752,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:57:1,56:1:36:56:1987:-175.497,-13.5604,0	0/1:82:45,37:45:1586:37:1313:-93.7852,0,-118.344	1/1:118:0,117:0:0:117:4196:-377.46,-35.2205,0	1/1:115:0,115:0:0:115:4090:-368.286,-34.6185,0	1/1:77:2,75:2:72:75:2681:-234.697,-16.3426,0	0/1:138:66,72:66:2297:72:2584:-191.267,0,-165.447	1/1:204:1,203:1:36:203:7267:-650.481,-57.8118,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:102:48,54:48:1708:54:1895:-140.12,0,-123.301	1/1:107:0,107:0:0:107:3819:-343.905,-32.2102,0	0/1:66:38,28:38:1344:28:992:-69.7264,0,-101.392	0/1:112:44,68:44:1576:68:2417:-184.07,0,-108.416	0/1:116:80,36:80:2834:36:1288:-81.3041,0,-220.38	1/1:29:0,29:0:0:29:1034:-93.3735,-8.72987,0	1/1:177:1,176:1:36:176:6277:-561.409,-49.684,0
chr08	5293792	.	A	T	142003	PASS	AB=0.458394;ABP=33.9086;AC=149;AF=0.801075;AN=186;AO=5115;CIGAR=1X;DP=6252;DPB=6252;DPRA=8.4837;EPP=10997.5;EPPR=2396.46;GTI=1;LEN=1;MEANALT=1.03261;MQM=59.9595;MQMR=60;NS=93;NUMALT=1;ODDS=3.19451;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182464;QR=40592;RO=1134;RPL=2357;RPP=71.2752;RPPR=16.5217;RPR=2758;RUN=1;SAF=2344;SAP=80.4145;SAR=2771;SRF=517;SRP=22.1591;SRR=617;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:627:-56.7544,-5.41854,0	1/1:64:0,64:0:0:64:2283:-205.731,-19.2659,0	0/1:97:51,46:51:1823:46:1644:-119.049,0,-135.15	1/1:70:0,70:0:0:70:2492:-223.832,-21.0721,0	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.0815	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	1/1:76:1,75:1:36:75:2681:-237.935,-19.28,0	1/1:82:1,81:1:36:81:2878:-255.622,-21.0862,0	1/1:48:0,48:0:0:48:1689:-152.263,-14.4494,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:103:0,103:0:0:103:3683:-331.672,-31.0061,0	1/1:125:0,125:0:0:125:4426:-398.513,-37.6288,0	1/1:113:0,113:0:0:113:4034:-363.248,-34.0164,0	1/1:105:0,105:0:0:105:3755:-338.15,-31.6082,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	1/1:143:0,143:0:0:143:5116:-460.583,-43.0473,0	1/1:85:0,85:0:0:85:3021:-272.12,-25.5876,0	1/1:53:0,53:0:0:53:1887:-170.108,-15.9546,0	1/1:135:0,135:0:0:135:4808:-432.878,-40.6391,0	1/1:83:0,83:0:0:83:2952:-265.915,-24.9855,0	0/1:27:22,5:22:776:5:180:-8.42425,0,-62.0343	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:46:25,21:25:892:21:748:-53.7979,0,-66.7523	1/1:34:0,34:0:0:34:1191:-107.493,-10.235,0	0/1:109:44,65:44:1572:65:2332:-177.327,0,-108.959	0/1:92:48,44:48:1728:44:1580:-114.792,0,-128.111	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:116:1,115:1:36:115:4105:-366.036,-31.3212,0	1/1:32:0,32:0:0:32:1137:-102.638,-9.63296,0	0/1:53:22,31:22:788:31:1082:-81.731,0,-55.2902	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:266:0,266:0:0:266:9493:-854.329,-80.074,0	0/1:28:16,12:16:576:12:414:-29.1601,0,-43.7461	0/1:98:49,49:49:1755:49:1756:-128.823,0,-128.732	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:93:53,40:53:1896:40:1418:-99.9201,0,-142.922	0/1:88:55,33:55:1957:33:1184:-80.3777,0,-149.913	0/1:74:38,36:38:1364:36:1287:-93.8566,0,-100.784	0/1:111:62,49:62:2224:49:1752:-124.55,0,-167.01	1/1:91:0,91:0:0:91:3217:-289.748,-27.3937,0	0/1:37:20,17:20:720:17:602:-43.3716,0,-53.9907	0/1:43:20,23:20:716:23:824:-61.539,0,-51.8234	0/1:97:60,37:60:2156:37:1320:-89.9007,0,-165.107	1/1:32:0,32:0:0:32:1137:-102.636,-9.63296,0	1/1:62:0,62:0:0:62:2210:-199.164,-18.6639,0	1/1:47:0,47:0:0:47:1688:-152.179,-14.1484,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:61:27,34:27:956:34:1216:-91.3837,0,-67.9929	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:33:21,12:21:733:12:416:-27.8342,0,-56.3557	0/1:12:7,5:7:252:5:171:-12.1131,0,-19.4166	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:168:2,166:2:72:166:5937:-527.6,-43.7363,0	.:.:.:.:.:.:.:.	0/1:57:35,21:35:1245:21:737:-49.4335,0,-95.1353	1/1:73:0,73:0:0:73:2620:-236.019,-21.9752,0	1/1:31:0,31:0:0:31:1102:-99.4902,-9.33193,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:84:1,83:1:36:83:2958:-262.855,-21.6882,0	0/1:38:26,12:26:936:12:432:-27.7821,0,-73.1203	1/1:57:3,53:3:108:53:1900:-161.203,-7.14234,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:130:1,129:1:36:129:4588:-409.485,-35.5356,0	1/1:7:0,7:0:0:7:233:-21.2943,-2.10721,0	1/1:26:0,26:0:0:26:927:-83.7482,-7.82678,0	0/1:44:22,22:22:792:22:784:-57.6386,0,-58.3604	1/1:86:0,86:0:0:86:3072:-276.709,-25.8886,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:71:0,71:0:0:71:2481:-223.483,-21.3731,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:54:0,54:0:0:54:1940:-174.868,-16.2556,0	0/1:85:49,36:49:1764:36:1292:-90.9962,0,-133.456	1/1:116:0,116:0:0:116:4160:-374.582,-34.9195,0	1/1:109:0,109:0:0:109:3912:-352.272,-32.8123,0	1/1:78:2,76:2:72:76:2732:-239.286,-16.6436,0	0/1:138:68,70:68:2448:70:2504:-184.07,0,-179.032	1/1:206:2,204:2:72:204:7256:-646.257,-55.1755,0	1/1:42:0,42:0:0:42:1479:-133.404,-12.6433,0	0/1:105:53,52:53:1896:52:1860:-136.071,0,-139.31	1/1:108:0,107:0:0:107:3827:-344.267,-32.2102,0	0/1:67:39,28:39:1372:28:1000:-70.1464,0,-103.607	0/1:114:46,68:46:1656:68:2428:-184.459,0,-115.011	0/1:115:80,35:80:2867:35:1240:-77.286,0,-223.648	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:179:0,179:0:0:179:6375:-573.803,-53.8844,0
chr08	5294653	.	A	T	185782	PASS	AB=0.503066;ABP=3.34318;AC=152;AF=0.808511;AN=188;AO=8527;CIGAR=1X;DP=10573;DPB=10573;DPRA=0;EPP=18328.6;EPPR=4350.64;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9914;MQMR=59.9961;NS=94;NUMALT=1;ODDS=5.68504;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=305094;QR=73031;RO=2038;RPL=8505;RPP=18328.6;RPPR=4359.26;RPR=22;RUN=1;SAF=0;SAP=18519.2;SAR=8527;SRF=1;SRP=4419.79;SRR=2037;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	1/1:168:0,168:0:0:168:6032:-542.981,-50.573,0	0/1:176:90,86:90:3240:86:3061:-222.737,0,-238.839	1/1:243:0,243:0:0:243:8685:-781.643,-73.1503,0	0/1:73:24,49:24:852:49:1733:-134.277,0,-55.0252	0/1:47:25,22:25:900:22:765:-55.0193,0,-67.1726	1/1:117:1,116:1:36:116:4115:-366.938,-31.6222,0	1/1:198:0,198:0:0:198:7108:-639.776,-59.6039,0	1/1:81:0,81:0:0:81:2883:-259.706,-24.3834,0	1/1:102:0,102:0:0:102:3660:-329.517,-30.7051,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:80:0,80:0:0:80:2868:-258.356,-24.0824,0	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	1/1:108:0,108:0:0:108:3861:-347.684,-32.5112,0	1/1:68:0,68:0:0:68:2423:-218.326,-20.47,0	1/1:61:0,61:0:0:61:2185:-196.916,-18.3628,0	1/1:83:0,83:0:0:83:2972:-267.713,-24.9855,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:50:1,49:1:36:49:1756:-154.726,-11.4532,0	1/1:260:0,260:0:0:260:9312:-838.046,-78.2678,0	1/1:166:0,166:0:0:166:5944:-535.068,-49.971,0	0/1:124:80,44:80:2880:44:1580:-105.164,0,-222.108	1/1:35:0,35:0:0:35:1235:-111.452,-10.5361,0	0/1:97:46,51:46:1639:51:1828:-135.601,0,-118.598	1/1:80:0,79:0:0:79:2818:-253.498,-23.7814,0	0/1:328:142,186:142:5092:186:6668:-501.458,0,-359.685	0/1:216:110,106:110:3940:106:3800:-277.175,0,-289.769	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:327:0,327:0:0:327:11701:-1052.95,-98.4368,0	1/1:202:6,196:6:216:196:7021:-612.159,-41.0175,0	0/1:100:56,44:56:2003:44:1572:-111.669,0,-150.44	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:240:0,240:0:0:240:8626:-776.33,-72.2472,0	0/1:267:111,156:111:3964:156:5581:-422.028,0,-276.574	0/1:88:45,43:45:1616:43:1542:-112.583,0,-119.239	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:255:115,140:115:4123:140:4996:-373.024,0,-294.49	0/1:48:27,21:27:968:21:756:-53.9178,0,-72.9879	0/1:126:66,59:66:2349:59:2116:-152.72,0,-173.679	0/1:65:39,26:39:1404:26:928:-64.2713,0,-107.092	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	0/1:66:41,25:41:1472:25:900:-61.453,0,-112.908	0/1:163:84,79:84:3004:79:2828:-205.691,0,-221.524	0/1:170:84,86:84:3020:86:3061:-224.543,0,-220.855	1/1:162:1,161:1:27:161:5772:-516.894,-46.0671,0	1/1:184:0,184:0:0:184:6560:-590.484,-55.3895,0	1/1:182:0,182:0:0:182:6493:-584.453,-54.7875,0	0/1:26:14,12:14:500:12:432:-31.3944,0,-37.5094	0/1:316:146,169:146:5252:169:6052:-449.599,0,-377.63	0/1:49:26,23:26:915:23:812:-58.6504,0,-67.9151	0/1:28:10,18:10:360:18:640:-49.5005,0,-24.3155	0/1:162:78,84:78:2787:84:2989:-220.475,0,-202.295	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:31:18,13:18:648:13:464:-32.7656,0,-49.32	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0	1/1:153:0,153:0:0:153:5470:-492.422,-46.0576,0	1/1:11:0,11:0:0:11:390:-35.4385,-3.31133,0	0/1:223:97,124:97:3479:124:4436:-332.524,0,-246.433	1/1:176:2,174:2:72:174:6220:-553.061,-46.1446,0	1/1:100:0,100:0:0:100:3584:-322.767,-30.103,0	1/1:105:0,105:0:0:105:3752:-337.881,-31.6082,0	1/1:107:1,106:1:36:106:3792:-337.88,-28.6119,0	0/1:165:116,49:116:4154:49:1760:-109.014,0,-324.372	1/1:52:1,51:1:36:51:1836:-161.922,-12.0553,0	1/1:85:0,85:0:0:85:3012:-271.313,-25.5876,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:185:1,184:1:36:184:6554:-586.345,-52.0923,0	0/1:49:13,36:13:456:36:1292:-101.833,0,-26.6228	1/1:189:0,188:0:0:188:6728:-605.235,-56.5936,0	1/1:195:1,194:1:32:194:6944:-621.826,-55.5015,0	1/1:136:0,136:0:0:136:4884:-439.71,-40.9401,0	1/1:128:1,127:1:36:127:4552:-406.247,-34.9336,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:158:1,157:1:36:157:5621:-502.411,-43.9645,0	0/1:149:77,71:77:2768:71:2548:-184.658,0,-204.448	1/1:229:0,229:0:0:229:8170:-735.314,-68.9359,0	1/1:135:0,135:0:0:135:4848:-436.472,-40.6391,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:61:28,33:28:999:33:1184:-88.3993,0,-71.8617	1/1:150:0,150:0:0:150:5384:-484.69,-45.1545,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:81:39,42:39:1392:42:1512:-111.991,0,-101.196	1/1:77:0,77:0:0:77:2748:-247.56,-23.1793,0	0/1:60:26,33:26:932:33:1179:-88.2975,0,-66.0783	0/1:159:81,78:81:2916:78:2800:-204.376,0,-214.81	0/1:62:39,23:39:1400:23:828:-56.1803,0,-107.635	1/1:89:0,89:0:0:89:3146:-283.364,-26.7917,0	1/1:105:1,104:1:36:104:3740:-333.201,-28.0099,0
chr08	5296376	.	C	T	56336.4	PASS	AB=0.33795;ABP=2720.28;AC=86;AF=0.457447;AN=188;AO=4099;CIGAR=1X;DP=12971;DPB=12971;DPRA=6.9629;EPP=8903.88;EPPR=18771.5;GTI=20;LEN=1;MEANALT=1.1828;MQM=59.9837;MQMR=59.9581;NS=94;NUMALT=1;ODDS=0.35384;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146777;QR=314925;RO=8850;RPL=0;RPP=8903.88;RPPR=18771.5;RPR=4099;RUN=1;SAF=4099;SAP=8903.88;SAR=0;SRF=8850;SRP=19220.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:39,36:39:1382:36:1292:-94.0065,0,-102.1	0/1:120:82,38:82:2921:38:1364:-86.9371,0,-226.985	0/1:417:350,66:350:12413:66:2356:-86.7107,0,-991.312	0/1:329:208,120:208:7383:120:4288:-287.001,0,-565.389	0/0:99:92,7:92:3265:7:252:0,-6.77301,-271.042	0/0:97:89,8:89:3163:8:288:0,-2.9325,-258.628	0/1:90:45,45:45:1608:45:1604:-117.557,0,-117.917	0/1:250:181,69:181:6410:69:2476:-147.836,0,-501.728	0/1:107:69,38:69:2453:38:1356:-90.1303,0,-188.813	0/1:176:97,79:97:3463:79:2828:-201.778,0,-258.899	0/1:131:65,66:65:2336:66:2353:-172.592,0,-171.064	0/1:190:114,74:114:4068:74:2656:-182.332,0,-309.355	0/1:188:100,86:100:3541:86:3096:-222.515,0,-262.549	0/1:156:84,71:84:2979:71:2552:-182.91,0,-221.324	0/1:102:40,62:40:1418:62:2228:-169.65,0,-97.2108	0/1:86:33,53:33:1180:53:1900:-145.388,0,-80.6195	0/1:108:46,62:46:1622:62:2224:-167.912,0,-113.756	0/1:61:23,38:23:824:38:1364:-104.698,0,-56.1205	0/1:60:29,31:29:1040:31:1116:-82.6899,0,-75.8526	0/1:66:29,37:29:1036:37:1324:-99.5941,0,-73.6859	0/1:188:92,96:92:3262:96:3412:-250.703,0,-237.208	0/0:91:89,2:89:3163:2:72:0,-20.557,-278.059	0/1:137:83,54:83:2949:54:1920:-131.836,0,-224.399	0/1:95:81,14:81:2896:14:492:-16.0145,0,-232.278	0/1:97:75,21:75:2664:21:752:-38.7476,0,-210.748	0/1:305:263,42:263:9368:42:1493:-42.8484,0,-751.071	0/0:331:304,27:304:10844:27:968:0,-12.2036,-888.428	0/1:66:32,34:32:1140:34:1215:-89.7878,0,-82.4123	0/1:226:152,74:152:5390:74:2644:-170.174,0,-417.203	0/1:112:60,52:60:2143:52:1860:-133.964,0,-159.422	0/1:153:133,20:133:4755:20:708:-17.988,0,-381.494	0/0:18:17,1:17:594:1:36:0,-1.82026,-50.1873	0/1:24:12,12:12:432:12:424:-31.2717,0,-31.9965	0/1:17:14,3:14:500:3:104:-4.5853,0,-40.2187	0/1:13:9,4:9:316:4:144:-9.40023,0,-24.8655	0/1:38:32,5:32:1131:5:180:-5.05413,0,-90.6	0/1:351:196,155:196:6950:155:5560:-394.861,0,-519.419	0/0:271:251,20:251:8953:20:716:0,-16.8114,-740.986	0/1:96:65,31:65:2315:31:1103:-70.6808,0,-179.711	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:151:113,38:113:4023:38:1364:-77.6052,0,-316.805	0/1:95:83,12:83:2964:12:428:-10.261,0,-238.396	0/1:211:170,41:170:6067:41:1468:-68.8988,0,-482.617	0/1:82:56,26:56:2004:26:936:-59.875,0,-155.949	0/1:107:54,52:54:1932:52:1872:-136.489,0,-141.888	0/1:126:108,18:108:3846:18:640:-19.9995,0,-308.407	0/1:159:139,20:139:4964:20:720:-17.265,0,-399.044	0/1:187:154,33:154:5503:33:1168:-49.1346,0,-439.104	0/1:118:72,46:72:2550:46:1648:-113.068,0,-194.229	0/1:243:149,94:149:5314:94:3380:-231.264,0,-405.245	0/1:102:71,31:71:2523:31:1112:-69.6863,0,-196.617	0/1:34:28,6:28:986:6:216:-9.55549,0,-78.8171	0/1:245:219,26:219:7791:26:936:-10.8067,0,-627.104	0/1:95:82,13:82:2936:13:464:-13.4997,0,-235.876	0/1:44:40,4:40:1440:4:144:-0.0682978,0,-116.652	0/1:190:162,28:162:5784:28:1004:-33.4802,0,-463.481	0/1:98:86,12:86:3064:12:428:-9.35787,0,-246.489	0/1:14:11,3:11:378:3:108:-5.86075,0,-30.1347	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:101:42,59:42:1500:59:2089:-157.874,0,-104.891	0/1:175:100,74:100:3563:74:2648:-185.827,0,-268.14	0/1:14:11,3:11:392:3:108:-5.86075,0,-31.4056	0/1:184:153,31:153:5451:31:1116:-45.3622,0,-435.332	0/1:254:161,92:161:5712:92:3296:-220.339,0,-437.681	0/1:82:36,46:36:1288:46:1648:-123.924,0,-91.5391	0/0:131:123,8:123:4377:8:284:0,-13.5316,-368.156	0/1:161:74,87:74:2643:87:3112:-231.841,0,-189.65	0/1:228:200,28:200:7093:28:1004:-22.041,0,-569.802	0/1:98:53,45:53:1904:45:1616:-116.229,0,-142.137	0/1:136:78,58:78:2775:58:2068:-145.451,0,-209.026	0/1:102:59,43:59:2096:43:1540:-108.188,0,-158.205	0/1:15:11,4:11:392:4:140:-8.42913,0,-31.1046	0/1:169:127,42:127:4511:42:1508:-85.1405,0,-355.286	0/1:125:86,39:86:3049:39:1396:-88.3094,0,-237.011	0/1:258:170,88:170:6041:88:3152:-206.239,0,-466.132	0/1:259:134,125:134:4796:125:4468:-324.324,0,-353.824	0/1:150:112,38:112:4000:38:1360:-77.5461,0,-315.036	0/1:119:69,49:69:2443:49:1752:-122.083,0,-184.244	0/1:44:38,6:38:1355:6:212:-6.17948,0,-109.004	0/1:194:125,69:125:4462:69:2472:-164.334,0,-343.35	0/1:186:158,28:158:5623:28:1008:-35.0448,0,-450.203	0/1:273:167,106:167:5942:106:3804:-260.362,0,-452.682	0/1:116:71,43:71:2523:43:1544:-104.576,0,-192.645	0/1:90:25,64:25:896:64:2296:-179.75,0,-53.8089	0/1:64:45,19:45:1587:19:684:-42.6244,0,-123.854	0/1:241:136,103:136:4837:103:3700:-260.895,0,-363.18	0/1:26:9,17:9:320:17:604:-46.8638,0,-21.3156	0/1:104:72,32:72:2545:32:1144:-71.9624,0,-197.993	0/1:157:84,71:84:2995:71:2548:-182.551,0,-222.763	0/1:117:89,28:89:3167:28:1004:-55.4554,0,-250.035	0/1:228:163,64:163:5768:64:2284:-137.128,0,-450.547	0/1:107:84,22:84:2982:22:792:-39.3367,0,-236.344	0/1:180:88,92:88:3123:92:3304:-243.393,0,-227.112	0/1:217:99,118:99:3507:118:4244:-316.814,0,-250.519
chr08	5296399	.	T	A	162246	PASS	AB=0.528826;ABP=108.043;AC=95;AF=0.505319;AN=188;AO=7813;CIGAR=1X;DP=14677;DPB=14677;DPRA=0;EPP=16960;EPPR=481.615;GTI=1;LEN=1;MEANALT=1.10638;MQM=59.9011;MQMR=59.2733;NS=94;NUMALT=1;ODDS=68.8676;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278603;QR=244965;RO=6853;RPL=6745;RPP=8960.25;RPPR=2818.78;RPR=1068;RUN=1;SAF=6746;SAP=8966.56;SAR=1067;SRF=5977;SRP=8247.89;SRR=876;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:76:37,39:37:1324:39:1385:-102.069,0,-96.5838	0/1:118:39,79:39:1396:79:2759:-213.023,0,-90.4176	0/1:408:180,227:180:6440:227:8112:-607.348,0,-456.957	0/1:320:118,202:118:4227:202:7192:-550.994,0,-284.23	0/1:101:53,48:53:1864:48:1720:-124.681,0,-137.633	0/1:96:39,57:39:1395:57:2021:-153.263,0,-96.9495	0/1:85:44,41:44:1559:41:1476:-107.549,0,-115.013	0/1:243:66,177:66:2352:177:6311:-494.924,0,-138.789	0/1:104:39,65:39:1404:65:2317:-177.482,0,-95.3522	0/1:169:77,92:77:2755:92:3304:-246.69,0,-197.317	0/1:128:64,64:64:2296:64:2261:-165.219,0,-168.369	0/1:189:75,114:75:2676:114:4048:-307.616,0,-184.191	0/1:184:85,99:85:3048:99:3497:-259.552,0,-219.16	0/1:152:70,82:70:2516:82:2944:-219.437,0,-180.935	0/1:101:62,39:62:2228:39:1396:-95.5351,0,-169.679	0/1:86:53,33:53:1892:33:1160:-78.8153,0,-144.669	0/1:103:60,43:60:2152:43:1536:-107.527,0,-162.94	0/1:58:35,23:35:1260:23:815:-56.211,0,-96.2457	0/1:61:31,30:31:1099:30:1072:-78.4296,0,-80.8566	0/1:65:37,28:37:1328:28:1008:-71.4694,0,-100.255	0/1:185:97,88:97:3472:88:3148:-227.855,0,-257.001	0/1:195:133,62:133:4761:62:2228:-142.055,0,-369.727	0/1:136:55,81:55:1961:81:2873:-217.856,0,-135.046	0/1:91:32,59:32:1133:59:2109:-162.683,0,-74.8829	0/1:95:23,72:23:820:72:2553:-201.423,0,-45.5247	0/1:801:441,360:441:15747:360:12853:-915.306,0,-1174.14	0/1:322:169,153:169:6037:153:5404:-389.56,0,-446.502	0/1:65:33,31:33:1188:31:1102:-79.5927,0,-87.6028	0/1:439:154,285:154:5496:285:10220:-786.874,0,-360.97	0/1:112:55,57:55:1972:57:2048:-150.876,0,-144.039	0/1:147:66,81:66:2343:81:2866:-213.794,0,-166.875	0/1:16:14,2:14:504:2:72:-2.02024,0,-40.8816	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:17:5,12:5:176:12:432:-34.1037,0,-11.0675	0/1:12:4,8:4:144:8:269:-20.9238,0,-9.70126	0/1:36:5,31:5:180:31:1112:-89.5543,0,-5.71498	0/1:683:258,424:258:9252:424:15117:-1153.67,0,-624.59	0/1:266:103,163:103:3655:163:5779:-440.151,0,-249.08	0/1:96:65,31:65:2315:31:1104:-70.7718,0,-179.71	0/1:8:2,6:2:72:6:208:-16.6508,0,-4.42848	0/1:149:81,68:81:2892:68:2436:-174.642,0,-215.663	0/1:94:30,64:30:1080:64:2288:-177.885,0,-69.2164	0/1:203:118,85:118:4227:85:3027:-211.551,0,-319.5	0/1:82:58,24:58:2067:24:864:-53.3981,0,-161.616	0/1:106:52,54:52:1868:54:1930:-142.067,0,-136.489	0/1:268:143,125:143:5097:125:4464:-321.167,0,-377.766	0/1:153:93,60:93:3305:60:2156:-148.249,0,-251.611	0/1:179:99,79:99:3529:79:2813:-199.467,0,-263.876	0/1:117:46,71:46:1648:71:2540:-193.631,0,-113.388	0/1:242:94,148:94:3376:148:5256:-400.326,0,-231.206	0/1:309:90,219:90:3228:219:7856:-613.977,0,-195.366	0/1:33:18,15:18:625:15:530:-38.098,0,-46.6385	0/1:246:97,149:97:3476:149:5314:-404.341,0,-238.998	0/1:163:99,64:99:3548:64:2265:-155.042,0,-269.866	0/1:44:21,23:21:756:23:820:-60.8772,0,-55.1219	0/1:182:95,87:95:3369:87:3066:-221.381,0,-248.639	0/1:94:39,55:39:1373:55:1960:-148.379,0,-95.5698	0/1:30:7,23:7:252:23:820:-65.0632,0,-13.9267	0/1:46:22,24:22:792:24:860:-63.8735,0,-57.7583	0/1:100:60,40:60:2156:40:1432:-99.0746,0,-164.204	0/1:172:78,94:78:2787:94:3370:-251.739,0,-199.293	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/1:361:220,141:220:7888:141:5033:-344.313,0,-600.213	0/1:250:94,156:94:3357:156:5585:-427.513,0,-227.088	0/1:83:46,37:46:1652:37:1324:-94.4766,0,-123.983	1/1:124:7,117:7:252:117:4181:-353.442,-14.2988,0	0/1:154:84,69:84:3020:69:2464:-175.595,0,-225.612	0/1:218:164,54:164:5863:54:1899:-105.558,0,-462.157	0/1:100:45,55:45:1616:55:1968:-147.292,0,-115.627	0/1:134:56,78:56:1988:78:2755:-207.836,0,-138.854	0/1:234:81,152:81:2896:152:5448:-419.873,0,-189.494	0/1:15:4,11:4:140:11:392:-31.1046,0,-8.42913	0/1:166:42,124:42:1508:124:4391:-345.393,0,-86.0436	0/1:126:87,39:87:3089:39:1375:-86.1173,0,-240.308	0/1:253:90,162:90:3205:162:5761:-442.389,0,-212.453	0/1:256:127,129:127:4545:129:4634:-340.158,0,-332.151	0/1:145:37,108:37:1332:108:3860:-303.945,0,-76.533	0/1:117:53,64:53:1896:64:2281:-170.328,0,-135.698	0/1:42:24,18:24:864:18:648:-46.0086,0,-65.4393	0/1:193:69,124:69:2480:124:4455:-343.02,0,-165.354	0/1:186:81,105:81:2885:105:3718:-278.83,0,-203.894	0/1:273:109,164:109:3912:164:5868:-446.05,0,-270.077	0/1:115:44,71:44:1580:71:2508:-191.354,0,-107.873	0/1:86:61,25:61:2173:25:896:-55.0718,0,-169.946	0/1:64:43,21:43:1540:21:748:-48.3794,0,-119.627	0/1:242:107,135:107:3840:135:4798:-359.129,0,-272.946	0/1:26:14,12:14:500:12:424:-30.6696,0,-37.5094	0/1:100:68,31:68:2420:31:1108:-69.8693,0,-187.895	0/1:150:69,79:69:2484:79:2835:-210.52,0,-178.944	0/1:120:60,59:60:2131:59:2108:-153.807,0,-155.876	0/1:228:143,85:143:5080:85:3036:-204.836,0,-388.711	0/1:106:86,20:86:3068:20:712:-32.4975,0,-244.43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chr08	5296425	.	AGAAC	AGAAT,GGAAT	384297	PASS	AB=0.52321,0.471672;ABP=80.7279,118.779;AC=97,91;AF=0.515957,0.484043;AN=188;AO=9294,7882;CIGAR=4M1X,1X3M1X;DP=17262;DPB=17262.4;DPRA=0,7.12821;EPP=20141.3,17101.2;EPPR=9.52472;GTI=2;LEN=1,5;MEANALT=2.8617,2.88172;MQM=59.1387,53.0447;MQMR=60;NS=94;NUMALT=2;ODDS=0.236228;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,72;PQR=0;PRO=0;QA=331883,274665;QR=105;RO=3;RPL=13,4134;RPP=20071.9,44.0583;RPPR=9.52472;RPR=9281,3748;RUN=1,1;SAF=8,4132;SAP=20115.2,43.212;SAR=9286,3750;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:75:0,13,62:0:0:13,62:468,2136:-210.556,-172.39,-168.476,-38.5226,0,-19.8588	1/2:234:0,144,87:0:0:144,87:5081,3041:-656.243,-243.836,-200.488,-412.441,0,-386.252	1/2:307:0,192,114:0:0:192,114:6862,3982:-878.818,-320.406,-262.608,-558.403,0,-524.085	1/2:519:0,231,286:0:0:231,286:8257,10027:-1481.6,-808.586,-739.048,-673.004,0,-586.909	1/1:157:0,145,11:0:0:145,11:5200,391:-467.649,-43.6494,0,-435.965,-11.8981,-432.654	1/2:162:0,133,29:0:0:133,29:4745,1019:-468.007,-81.2787,-41.2417,-387.074,0,-378.344	1/2:187:0,75,112:0:0:75,112:2670,3867:-528.85,-311.294,-288.717,-217.906,0,-184.191	1/2:364:0,196,164:0:0:196,164:7021,5715:-1026.4,-455.149,-396.147,-571.294,0,-521.925	1/2:140:0,46,94:0:0:46,94:1644,3279:-392.418,-258.549,-244.702,-134.22,0,-105.923	1/2:202:0,39,160:0:0:39,160:1400,5570:-564.129,-449.928,-438.188,-114.212,0,-66.0469	1/2:151:0,53,98:0:0:53,98:1885,3408:-429.229,-275.659,-259.704,-153.922,0,-124.421	1/2:232:1,85,145:1:35:85,145:3048,5076:-650.36,-402.341,-379.602,-245.507,0,-204.706	1/2:225:0,78,145:0:0:78,145:2784,5013:-629.723,-404.015,-380.535,-225.699,0,-182.05	1/2:184:0,78,105:0:0:78,105:2788,3675:-523.273,-297.38,-273.9,-225.934,0,-194.326	1/2:164:0,54,108:0:0:54,108:1936,3793:-464.721,-306.886,-290.631,-157.832,0,-125.321	1/2:135:0,37,96:0:0:37,96:1332,3347:-378.734,-270.107,-258.969,-108.645,0,-79.7463	1/2:162:0,70,92:0:0:70,92:2501,3172:-459.836,-256.055,-234.983,-204.132,0,-176.437	1/2:99:0,36,63:0:0:36,63:1288,2180:-280.522,-175.524,-164.687,-105.35,0,-86.3851	1/2:70:0,23,46:0:0:23,46:824,1598:-196.314,-129.131,-122.207,-67.3182,0,-53.4708	1/2:233:0,105,128:0:0:105,128:3700,4469:-662.075,-360.936,-329.328,-301.489,0,-262.957	1/2:252:0,59,193:0:0:59,193:2112,6704:-711.354,-539.21,-521.45,-172.498,0,-114.399	1/2:108:0,92,16:0:0:92,16:3270,560:-312.134,-45.6878,-17.993,-266.795,0,-261.979	1/2:128:0,42,85:0:0:42,85:1506,2983:-363.61,-240.81,-228.167,-122.931,0,-97.3433	1/2:267:0,236,30:0:0:236,30:8484,1041:-775.506,-83.6536,-12.6106,-691.897,0,-682.867	1/2:144:0,94,49:0:0:94,49:3364,1692:-409.109,-136.439,-108.142,-272.756,0,-258.006	1/2:558:0,458,97:0:0:458,97:16306,3401:-1603.78,-275.856,-137.984,-1327.96,0,-1298.76	1/2:224:0,177,46:0:0:177,46:6277,1605:-640.994,-129.786,-76.504,-511.304,0,-497.456	1/2:106:0,50,56:0:0:50,56:1800,1965:-305.993,-159.118,-144.067,-147.23,0,-130.372	1/2:292:0,136,155:0:0:136,155:4853,5421:-835.017,-439.503,-398.563,-395.603,0,-348.944	1/2:215:0,98,115:0:0:98,115:3477,4055:-609.94,-326.707,-297.206,-283.33,0,-248.712	1/2:308:0,249,57:0:0:249,57:8937,1980:-889.004,-160.112,-85.1556,-728.905,0,-711.746	1/2:13:0,10,3:0:0:10,3:352,108:-37.7317,-9.0792,-6.0689,-29.0079,0,-28.1048	1/2:28:0,12,16:0:0:12,16:432,559:-80.9256,-45.6717,-42.0593,-35.6088,0,-30.7924	1/2:20:0,17,2:0:0:17,2:604,72:-55.0746,-5.87483,-0.757325,-49.1993,0,-48.5973	1/2:19:0,11,8:0:0:11,8:396,287:-55.7856,-23.4862,-20.1749,-32.6562,0,-30.248	1/2:26:0,19,7:0:0:19,7:680,245:-75.5846,-20.1421,-14.4226,-55.7928,0,-53.6856	1/2:503:0,241,261:0:0:241,261:8614,9111:-1440.23,-738.845,-666.297,-701.432,0,-622.864	1/1:470:0,433,37:0:0:433,37:15458,1286:-1388.43,-130.346,0,-1285.12,-26.6843,-1273.98	1/2:99:0,55,43:0:0:55,43:1961,1484:-279.789,-119.978,-103.421,-159.876,0,-146.931	1/2:5:0,3,2:0:0:3,2:108,71:-14.9552,-6.14,-5.23691,-9.17208,0,-8.57002	1/2:267:0,186,80:0:0:186,80:6630,2805:-766.284,-225.931,-169.94,-540.5,0,-516.418	1/2:60:0,38,22:0:0:38,22:1353,759:-171.836,-61.5994,-50.1603,-110.584,0,-103.962	1/2:283:0,198,83:0:0:198,83:7085,2879:-809.881,-232.214,-172.61,-577.772,0,-552.786	1/2:149:1,101,47:1:34:101,47:3605,1650:-424.587,-130.991,-103.345,-291.151,0,-279.76	1/2:185:0,82,103:0:0:82,103:2940,3563:-528.429,-288.738,-264.053,-240.043,0,-209.037	1/2:168:0,125,42:0:0:125,42:4477,1464:-483.781,-118.719,-81.0904,-365.149,0,-352.506	1/2:115:0,66,48:0:0:66,48:2374,1688:-329.378,-135.714,-115.846,-193.754,0,-179.304	1/2:200:0,104,93:0:0:104,93:3675,3252:-560.486,-261.219,-229.912,-299.308,0,-271.313	1/2:210:0,102,107:0:0:102,107:3622,3724:-595.751,-300.871,-270.166,-294.935,0,-262.725	1/2:356:0,193,162:0:0:193,162:6928,5681:-1024.72,-460.074,-401.975,-564.644,0,-515.877	1/2:246:0,153,92:0:0:153,92:5500,3218:-709.546,-260.92,-214.862,-448.782,0,-421.087	1/2:29:0,21,8:0:0:21,8:748,278:-83.8662,-22.8918,-16.5701,-61.3237,0,-58.9154	1/2:214:0,171,43:0:0:171,43:6110,1511:-620.061,-122.135,-70.6584,-498.276,0,-485.332	1/2:82:0,55,27:0:0:55,27:1967,936:-236.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chr08	5296444	.	A	G	29211.4	PASS	AB=0.377625;ABP=684.352;AC=35;AF=0.18617;AN=188;AO=2002;CIGAR=1X;DP=13496;DPB=13496;DPRA=1.27658;EPP=4350.3;EPPR=21461.1;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.8656;MQMR=54.5687;NS=94;NUMALT=1;ODDS=9.75873;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71489;QR=412154;RO=11493;RPL=2002;RPP=4350.3;RPPR=24959.7;RPR=0;RUN=1;SAF=0;SAP=4350.3;SAR=2002;SRF=418;SRP=21461.1;SRR=11075;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:34,1:34:1220:1:36:0,-6.93777,-104.685	0/0:195:195,0:195:6993:0:0:0,-58.7008,-624.09	0/1:236:151,85:151:5424:85:3036:-202.383,0,-412.505	0/0:395:392,3:392:14056:3:108:0,-108.832,-1247.78	0/1:151:105,46:105:3764:46:1648:-103.15,0,-293.229	0/1:154:107,47:107:3843:47:1688:-105.846,0,-297.523	0/0:138:138,0:138:4951:0:0:0,-41.5421,-441.747	0/0:285:285,0:285:10215:0:0:0,-85.7935,-908.113	0/0:97:97,0:97:3480:0:0:0,-29.1999,-303.9	0/0:124:124,0:124:4460:0:0:0,-37.3277,-397.585	0/0:90:90,0:90:3215:0:0:0,-27.0927,-287.701	0/0:154:154,0:154:5528:0:0:0,-46.3586,-488.32	0/0:136:136,0:136:4888:0:0:0,-40.9401,-435.292	0/0:110:110,0:110:3931:0:0:0,-33.1133,-350.741	0/0:103:103,0:103:3691:0:0:0,-31.0061,-329.638	0/0:82:82,0:82:2944:0:0:0,-24.6845,-261.982	0/0:100:100,0:100:3580:0:0:0,-30.103,-319.998	0/0:61:61,0:61:2188:0:0:0,-18.3628,-194.645	0/0:38:38,0:38:1360:0:0:0,-11.4391,-120.981	0/0:200:200,0:200:7171:0:0:0,-60.206,-641.441	0/0:152:152,0:152:5442:0:0:0,-45.7566,-483.105	0/1:109:47,62:47:1692:62:2203:-165.723,0,-119.469	0/0:76:76,0:76:2732:0:0:0,-22.8783,-243.143	0/1:255:154,101:154:5517:101:3619:-249.093,0,-418.194	0/0:119:119,0:119:4255:0:0:0,-35.8226,-380.64	0/1:554:331,223:331:11852:223:7948:-548.575,0,-898.346	0/1:199:97,102:97:3480:102:3642:-267.988,0,-252.195	0/0:71:71,0:71:2556:0:0:0,-21.3731,-228.779	0/0:295:294,1:294:10528:1:36:0,-85.2056,-941.26	0/0:161:154,7:154:5532:7:243:0,-26.2583,-470.937	0/1:286:217,69:217:7787:69:2480:-137.358,0,-613.617	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1039	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.8717	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9229	0/0:16:16,0:16:572:0:0:0,-4.81648,-50.8884	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.2101	0/0:501:501,0:501:17950:0:0:0,-150.816,-1612.1	0/1:448:302,146:302:10827:146:5188:-332.197,0,-835.964	0/1:67:37,30:37:1332:30:1080:-77.3419,0,-98.1666	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:224:132,92:132:4740:92:3284:-228.344,0,-356.628	0/1:48:37,11:37:1332:11:392:-21.1706,0,-105.239	0/1:243:148,95:148:5311:95:3387:-231.895,0,-401.714	0/1:123:69,54:69:2484:54:1936:-137.49,0,-186.183	0/0:134:134,0:134:4799:0:0:0,-40.338,-430.522	0/1:165:111,54:111:3983:54:1922:-123.587,0,-308.485	0/1:92:60,32:60:2156:32:1135:-74.7563,0,-163.935	0/1:166:121,45:121:4344:45:1586:-93.0579,0,-337.144	0/0:164:164,0:164:5895:0:0:0,-49.3689,-527.87	0/0:262:262,0:262:9409:0:0:0,-78.8699,-843.757	0/0:243:243,0:243:8701:0:0:0,-73.1503,-780.6	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0019	0/1:191:117,74:117:4191:74:2652:-181.422,0,-318.174	0/1:83:51,32:51:1832:32:1148:-78.6443,0,-139.92	0/1:34:18,16:18:633:16:568:-41.2168,0,-45.6487	0/1:119:71,48:71:2532:48:1712:-118.542,0,-189.708	0/1:96:65,31:65:2324:31:1108:-71.1321,0,-180.379	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.7912	0/1:26:16,10:16:576:10:360:-24.9175,0,-44.3188	0/0:91:91,0:91:3259:0:0:0,-27.3937,-291.049	0/0:165:163,2:163:5848:2:72:0,-42.8332,-517.15	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.6365	0/1:208:135,73:135:4840:73:2601:-171.708,0,-372.314	0/0:341:339,2:339:12160:2:72:0,-95.8145,-1082.42	0/0:74:74,0:74:2660:0:0:0,-22.2762,-238.308	0/0:108:108,0:108:3876:0:0:0,-32.5112,-348.615	0/0:159:156,3:156:5574:3:108:0,-37.7886,-487.645	0/1:160:63,97:63:2268:97:3488:-265.965,0,-154.796	0/0:54:54,0:54:1944:0:0:0,-16.2556,-173.565	0/0:92:91,1:91:3263:1:36:0,-24.0965,-288.373	0/0:179:179,0:179:6440:0:0:0,-53.8844,-578.004	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.6691	0/0:110:110,0:110:3925:0:0:0,-33.1133,-348.573	0/1:109:86,23:86:3077:23:820:-41.3102,0,-241.055	0/0:312:311,1:311:11155:1:36:0,-90.3231,-994.619	0/0:271:271,0:271:9696:0:0:0,-81.5791,-868.352	0/0:77:77,0:77:2764:0:0:0,-23.1793,-246.603	0/0:142:142,0:142:5092:0:0:0,-42.7463,-448.391	0/1:18:8,10:8:288:10:360:-27.3188,0,-19.9166	0/0:188:188,0:188:6735:0:0:0,-56.5936,-601.474	0/1:140:108,32:108:3872:32:1120:-58.96,0,-303.599	0/0:209:209,0:209:7495:0:0:0,-62.9153,-671.347	0/0:154:153,1:153:5500:1:36:0,-42.7603,-490.25	0/0:79:77,2:77:2764:2:72:0,-17.02,-239.586	0/1:122:68,54:68:2440:54:1928:-137.071,0,-182.737	0/0:248:248,0:248:8907:0:0:0,-74.6554,-796.32	0/0:36:36,0:36:1292:0:0:0,-10.8371,-114.987	0/1:108:58,49:58:2084:49:1764:-126.467,0,-153.543	0/0:114:114,0:114:4069:0:0:0,-34.3174,-361.569	0/1:72:52,20:52:1860:20:711:-42.6381,0,-145.576	0/1:111:60,51:60:2160:51:1824:-131.02,0,-160.174	0/1:87:37,50:37:1323:50:1792:-135.373,0,-92.8958	0/0:189:189,0:189:6779:0:0:0,-56.8947,-603.824	0/0:223:223,0:223:8019:0:0:0,-67.1297,-716.311
chr08	5302741	.	T	C	128757	PASS	AB=0.486078;ABP=7.90787;AC=152;AF=0.808511;AN=188;AO=5700;CIGAR=1X;DP=7204;DPB=7204;DPRA=0;EPP=11021.5;EPPR=3251.53;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.4216;MQMR=59.8884;NS=94;NUMALT=1;ODDS=4.29155;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203628;QR=53560;RO=1496;RPL=161;RPP=11021.5;RPPR=3251.53;RPR=5539;RUN=1;SAF=5700;SAP=12380.4;SAR=0;SRF=1496;SRP=3251.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:72:0,72:0:0:72:2551:-229.701,-21.6742,0	1/1:34:0,33:0:0:33:1173:-105.487,-9.93399,0	0/1:131:50,81:50:1792:81:2892:-220.502,0,-122.128	1/1:360:0,360:0:0:360:12871:-1157.21,-108.371,0	0/1:40:25,15:25:900:15:536:-36.5172,0,-69.2752	0/1:83:60,22:60:2160:22:792:-46.5614,0,-169.129	1/1:46:0,46:0:0:46:1644:-148.234,-13.8474,0	1/1:125:0,125:0:0:125:4475:-402.639,-37.6288,0	1/1:78:0,78:0:0:78:2767:-249.241,-23.4803,0	1/1:49:0,49:0:0:49:1764:-158.948,-14.7505,0	1/1:37:0,37:0:0:37:1323:-119.367,-11.1381,0	1/1:47:0,47:0:0:47:1655:-148.894,-14.1484,0	1/1:45:0,45:0:0:45:1612:-145.334,-13.5464,0	1/1:40:0,40:0:0:40:1432:-129.171,-12.0412,0	1/1:44:0,44:0:0:44:1584:-141.806,-13.2453,0	1/1:48:0,48:0:0:48:1720:-155.06,-14.4494,0	1/1:21:0,21:0:0:21:756:-67.8753,-6.32163,0	1/1:17:0,17:0:0:17:612:-55.3958,-5.11751,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:91:0,91:0:0:91:3260:-293.611,-27.3937,0	1/1:77:0,77:0:0:77:2740:-246.229,-23.1793,0	0/1:67:36,31:36:1292:31:1116:-80.5747,0,-96.4148	1/1:168:0,168:0:0:168:6012:-541.118,-50.573,0	0/1:56:29,27:29:1036:27:960:-69.8486,0,-76.6961	1/1:92:0,92:0:0:92:3288:-296.099,-27.6948,0	0/1:219:102,116:102:3656:116:4160:-308.749,0,-263.189	0/1:137:75,62:75:2673:62:2204:-157.377,0,-199.573	1/1:14:0,14:0:0:14:504:-45.6935,-4.21442,0	1/1:188:0,188:0:0:188:6699:-602.87,-56.5936,0	1/1:175:2,173:2:72:173:6177:-548.448,-45.8435,0	0/1:144:83,61:83:2972:61:2179:-153.026,0,-224.364	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:21:0,21:0:0:21:748:-67.507,-6.32163,0	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:48:0,48:0:0:48:1728:-155.494,-14.4494,0	1/1:110:0,110:0:0:110:3932:-353.911,-33.1133,0	0/1:188:63,125:63:2264:125:4469:-345.748,0,-147.414	0/1:35:19,16:19:676:16:559:-40.1006,0,-50.6319	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:96:40,56:40:1432:56:2008:-152.067,0,-100.279	0/1:26:15,11:15:536:11:392:-27.7933,0,-40.748	0/1:107:60,47:60:2145:47:1688:-119.976,0,-161.088	0/1:27:17,10:17:612:10:360:-24.4248,0,-47.2856	1/1:32:0,32:0:0:32:1139:-102.788,-9.63296,0	0/1:135:90,45:90:3228:45:1604:-102.88,0,-248.653	0/1:92:43,49:43:1536:49:1756:-130.623,0,-110.838	0/1:166:80,86:80:2868:86:3048:-224.372,0,-208.386	1/1:73:0,73:0:0:73:2616:-235.624,-21.9752,0	1/1:107:0,107:0:0:107:3840:-345.783,-32.2102,0	1/1:94:0,94:0:0:94:3359:-302.517,-28.2968,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:115:52,63:52:1872:63:2260:-168.867,0,-134.141	0/1:88:50,38:50:1788:38:1364:-96.07,0,-134.654	0/1:18:8,10:8:284:10:356:-26.6644,0,-20.4848	0/1:126:62,64:62:2220:64:2285:-167.547,0,-162.135	0/1:50:22,28:22:792:28:1008:-75.9626,0,-56.546	1/1:25:0,25:0:0:25:887:-80.1419,-7.52575,0	0/1:29:7,21:7:252:21:756:-59.7207,0,-14.3714	1/1:97:0,97:0:0:97:3452:-310.718,-29.1999,0	1/1:69:0,69:0:0:69:2463:-221.9,-20.7711,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:87:57,30:57:2040:30:1063:-69.7351,0,-157.682	1/1:114:1,113:1:36:113:4056:-361.572,-30.7191,0	1/1:31:0,31:0:0:31:1108:-100.029,-9.33193,0	1/1:112:0,112:0:0:112:3991:-359.365,-33.7154,0	1/1:146:0,146:0:0:146:5216:-469.555,-43.9504,0	0/1:170:108,62:108:3810:62:2216:-148.506,0,-291.924	1/1:20:0,20:0:0:20:716:-64.7631,-6.0206,0	1/1:73:0,73:0:0:73:2600:-234.182,-21.9752,0	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:132:0,132:0:0:132:4685:-421.559,-39.736,0	0/1:54:23,31:23:824:31:1090:-82.0371,0,-58.2277	1/1:118:0,118:0:0:118:4220:-379.781,-35.5215,0	1/1:93:0,93:0:0:93:3336:-299.994,-27.9958,0	1/1:208:0,206:0:0:206:7377:-663.484,-62.0122,0	1/1:64:1,63:1:36:63:2252:-199.327,-15.6676,0	0/1:34:19,15:19:680:15:540:-38.7015,0,-51.2941	1/1:67:0,67:0:0:67:2400:-216.219,-20.169,0	0/1:109:43,65:43:1548:65:2324:-176.533,0,-106.742	1/1:139:0,138:0:0:138:4931:-443.184,-41.5421,0	1/1:49:0,49:0:0:49:1764:-159.037,-14.7505,0	1/1:28:0,28:0:0:28:995:-89.8269,-8.42884,0	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	1/1:66:0,66:0:0:66:2344:-211.18,-19.868,0	1/1:10:0,10:0:0:10:360:-32.7361,-3.0103,0	0/1:56:39,17:39:1400:17:612:-38.5558,0,-109.442	1/1:44:0,44:0:0:44:1549:-139.668,-13.2453,0	0/1:32:16,16:16:576:16:567:-41.7278,0,-42.542	0/1:97:42,55:42:1504:55:1972:-148.555,0,-106.455	0/1:48:31,17:31:1116:17:604:-40.2412,0,-86.3023	1/1:62:1,61:1:36:61:2160:-191.04,-15.0656,0	1/1:69:0,69:0:0:69:2454:-221.1,-20.7711,0
chr08	5335465	.	A	C	71469.3	PASS	AB=0.486166;ABP=5.53367;AC=152;AF=0.808511;AN=188;AO=3299;CIGAR=1X;DP=4086;DPB=4086;DPRA=8.77634;EPP=7166.7;EPPR=1709.79;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.6693;MQMR=59.5229;NS=94;NUMALT=1;ODDS=1.70806;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118031;QR=28108;RO=786;RPL=0;RPP=7166.7;RPPR=1709.79;RPR=3299;RUN=1;SAF=3299;SAP=7166.7;SAR=0;SRF=786;SRP=1709.79;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:67:32,35:32:1137:35:1247:-92.3651,0,-82.4148	1/1:59:0,59:0:0:59:2097:-188.966,-17.7608,0	0/1:22:14,8:14:504:8:284:-19.2803,0,-38.8278	0/1:14:10,4:10:356:4:144:-9.0992,0,-28.1668	1/1:35:0,35:0:0:35:1260:-113.048,-10.5361,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	1/1:108:0,108:0:0:108:3860:-347.54,-32.5112,0	1/1:46:0,46:0:0:46:1644:-148.237,-13.8474,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:43:0,43:0:0:43:1536:-138.499,-12.9443,0	1/1:55:0,55:0:0:55:1954:-176.041,-16.5567,0	1/1:30:0,30:0:0:30:1076:-97.1519,-9.0309,0	1/1:53:0,53:0:0:53:1899:-171.186,-15.9546,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:43:0,43:0:0:43:1547:-139.414,-12.9443,0	1/1:15:0,15:0:0:15:534:-48.0204,-4.51545,0	1/1:48:0,48:0:0:48:1724:-155.417,-14.4494,0	1/1:61:0,61:0:0:61:2180:-196.401,-18.3628,0	0/1:53:33,20:33:1188:20:720:-49.1742,0,-91.274	1/1:55:0,55:0:0:55:1963:-176.888,-16.5567,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:51:0,51:0:0:51:1825:-164.525,-15.3525,0	0/1:143:84,59:84:2990:59:2120:-148.02,0,-226.244	0/1:74:36,38:36:1262:38:1365:-100.803,0,-91.6018	1/1:16:0,16:0:0:16:576:-52.1741,-4.81648,0	1/1:132:0,132:0:0:132:4717:-424.625,-39.736,0	1/1:61:0,61:0:0:61:2175:-196.015,-18.3628,0	0/1:44:24,20:24:860:20:720:-51.8835,0,-64.4628	0/1:6:2,4:2:72:4:144:-11.4783,0,-5.03054	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.81232	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:93:0,93:0:0:93:3324:-299.288,-27.9958,0	0/1:102:44,58:44:1576:58:2079:-156.645,0,-111.405	0/1:18:5,12:5:180:12:432:-33.7439,0,-11.0747	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:44:25,19:25:892:19:672:-47.5499,0,-67.3394	0/1:13:6,7:6:216:7:252:-19.1146,0,-15.8771	0/1:74:41,33:41:1472:33:1184:-84.5069,0,-110.457	0/1:22:7,15:7:252:15:540:-42.3139,0,-16.3924	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:132:78,54:78:2770:54:1936:-134.752,0,-209.479	0/1:65:33,32:33:1184:32:1152:-84.3948,0,-87.3014	0/1:72:34,38:34:1220:38:1352:-100.295,0,-88.4326	1/1:36:0,36:0:0:36:1282:-115.679,-10.8371,0	1/1:60:0,60:0:0:60:2152:-193.918,-18.0618,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:59:31,28:31:1101:28:1008:-73.2756,0,-81.6376	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:48:25,23:25:896:23:824:-60.0339,0,-66.5003	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	1/1:14:0,14:0:0:14:495:-44.8744,-4.21442,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.7475	1/1:46:0,46:0:0:46:1648:-148.523,-13.8474,0	1/1:70:0,70:0:0:70:2512:-226.331,-21.0721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:53:23,30:23:824:30:1080:-81.5302,0,-58.5111	1/1:46:0,46:0:0:46:1648:-148.58,-13.8474,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:47:0,47:0:0:47:1688:-152.179,-14.1484,0	0/1:62:48,14:48:1724:14:496:-26.3104,0,-136.754	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:49:0,49:0:0:49:1760:-158.627,-14.7505,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:45:0,45:0:0:45:1604:-144.642,-13.5464,0	0/1:68:26,42:26:936:42:1500:-114.424,0,-64.0894	1/1:129:0,129:0:0:129:4632:-416.786,-38.8329,0	1/1:32:0,32:0:0:32:1148:-103.628,-9.63296,0	1/1:92:0,92:0:0:92:3252:-292.873,-27.6948,0	1/1:20:0,20:0:0:20:707:-63.9224,-6.0206,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:89:0,89:0:0:89:3178:-286.237,-26.7917,0	0/1:55:18,37:18:648:37:1328:-103.265,0,-42.0952	1/1:82:0,82:0:0:82:2932:-264.108,-24.6845,0	1/1:43:0,43:0:0:43:1529:-137.765,-12.9443,0	1/1:44:1,43:1:36:43:1540:-135.294,-9.64705,0	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	1/1:92:0,92:0:0:92:3271:-294.497,-27.6948,0	1/1:15:0,15:0:0:15:536:-48.5435,-4.51545,0	0/1:34:17,17:17:612:17:608:-44.817,0,-45.1702	1/1:42:0,42:0:0:42:1504:-135.654,-12.6433,0	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:39:13,26:13:468:26:936:-72.8193,0,-30.7195	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3462	1/1:35:1,34:1:36:34:1212:-105.788,-6.93778,0	1/1:66:0,66:0:0:66:2372:-213.109,-19.868,0
chr08	5349406	.	G	A	30032.8	PASS	AB=0.62098;ABP=350.83;AC=36;AF=0.191489;AN=188;AO=1714;CIGAR=1X;DP=6096;DPB=6096;DPRA=1.40456;EPP=3724.91;EPPR=9516.23;GTI=6;LEN=1;MEANALT=1.02381;MQM=54.493;MQMR=59.8957;NS=94;NUMALT=1;ODDS=0.36703;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61183;QR=155896;RO=4381;RPL=0;RPP=3724.91;RPPR=9516.23;RPR=1714;RUN=1;SAF=0;SAP=3724.91;SAR=1714;SRF=0;SRP=9516.23;SRR=4381;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0269	0/0:89:89,0:89:3148:0:0:0,-26.7917,-283.519	0/1:64:19,45:19:684:45:1603:-124.907,0,-42.5366	0/0:124:123,1:123:4402:1:36:0,-33.7294,-392.753	0/1:83:38,45:38:1340:45:1605:-119.397,0,-95.9118	0/1:59:18,41:18:644:41:1472:-114.686,0,-40.5289	0/0:53:53,0:53:1899:0:0:0,-15.9546,-171.187	0/0:133:133,0:133:4740:0:0:0,-40.037,-426.741	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.845	0/0:64:64,0:64:2254:0:0:0,-19.2659,-203.12	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7375	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.523	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:45:45,0:45:1564:0:0:0,-13.5463,-140.552	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:114:114,0:114:4040:0:0:0,-34.3174,-363.366	0/0:88:88,0:88:3155:0:0:0,-26.4906,-284.174	0/1:144:39,105:39:1383:105:3726:-291.562,0,-81.4197	0/0:55:53,2:53:1900:2:72:0,-9.72486,-164.437	0/1:71:39,32:39:1387:32:1148:-81.9553,0,-103.755	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/1:305:141,164:141:5035:164:5875:-436.457,0,-361.483	0/1:141:45,96:45:1569:96:3418:-263.709,0,-99.0506	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:148:148,0:148:5249:0:0:0,-44.5524,-472.548	0/0:124:116,8:116:4133:8:288:0,-11.2883,-346.057	0/1:92:38,54:38:1364:54:1912:-144.387,0,-95.1384	0/1:8:1,7:1:36:7:252:-20.5881,0,-1.19003	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:5:1,4:1:36:4:144:-11.775,0,-2.09312	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0742	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:93:93,0:93:3322:0:0:0,-27.9958,-299.17	0/1:221:75,146:75:2677:146:5205:-400.749,0,-174.644	0/1:17:10,7:10:356:7:252:-17.844,0,-27.2637	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:123:33,90:33:1188:90:3233:-253.245,0,-70.2019	0/1:7:2,5:2:72:5:180:-14.2654,0,-4.72951	0/1:144:46,98:46:1634:98:3501:-271.165,0,-103.999	0/1:31:20,11:20:705:11:392:-26.2636,0,-54.4409	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:73:34,39:34:1209:39:1381:-102.501,0,-87.1389	0/1:120:41,79:41:1449:79:2805:-215.892,0,-94.5766	0/1:194:55,139:55:1948:139:4947:-386.143,0,-117.18	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.848	0/0:95:95,0:95:3379:0:0:0,-28.5978,-304.324	0/0:86:86,0:86:3083:0:0:0,-25.8886,-277.141	0/1:10:3,7:3:108:7:248:-18.8529,0,-7.06487	0/1:91:52,39:52:1836:39:1388:-97.2586,0,-138.124	0/1:28:11,17:11:396:17:608:-46.5958,0,-27.5539	0/1:18:8,10:8:288:10:360:-27.2434,0,-20.8489	0/1:82:27,55:27:968:55:1968:-152.274,0,-62.5625	0/1:31:13,18:13:468:18:648:-49.2754,0,-33.1277	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:17:6,11:6:216:11:396:-30.7859,0,-14.673	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/0:86:84,2:84:3001:2:72:0,-19.0568,-263.488	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:208:82,125:82:2920:125:4477:-340.119,0,-200.398	0/0:163:163,0:163:5806:0:0:0,-49.0679,-522.653	0/0:60:60,0:60:2079:0:0:0,-18.0618,-187.373	0/0:46:46,0:46:1612:0:0:0,-13.8474,-145.366	0/0:87:87,0:87:3096:0:0:0,-26.1896,-278.856	0/1:84:26,58:26:936:58:2069:-160.786,0,-59.2729	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:57:57,0:57:2031:0:0:0,-17.1587,-182.904	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:61:60,1:60:2119:1:36:0,-14.7656,-187.376	0/1:37:19,18:19:684:18:648:-47.3663,0,-50.7522	0/0:73:73,0:73:2584:0:0:0,-21.9752,-232.808	0/0:90:90,0:90:3176:0:0:0,-27.0927,-286.062	0/0:101:101,0:101:3581:0:0:0,-30.404,-322.493	0/0:54:53,1:53:1896:1:36:0,-12.6664,-167.328	0/1:7:5,2:5:165:2:72:-4.71232,0,-13.0664	0/0:59:59,0:59:2069:0:0:0,-17.7608,-186.472	0/1:67:26,41:26:927:41:1464:-111.544,0,-63.5784	0/0:107:107,0:107:3825:0:0:0,-32.2102,-344.445	0/0:101:101,0:101:3596:0:0:0,-30.404,-323.846	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:43:18,25:18:648:25:887:-67.072,0,-45.7076	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:28:28,0:28:981:0:0:0,-8.42884,-88.6001	0/1:41:17,24:17:597:24:856:-64.8324,0,-41.7139	0/0:27:27,0:27:942:0:0:0,-8.12781,-85.0889	0/1:11:7,4:7:239:4:144:-9.98341,0,-18.5314	0/1:25:14,11:14:496:11:396:-28.4024,0,-37.4451	0/1:34:7,27:7:252:27:963:-76.5752,0,-12.7939	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922
chr08	5349419	.	A	G	91494.9	PASS	AB=0.377462;ABP=360.633;AC=152;AF=0.808511;AN=188;AO=4372;CIGAR=1X;DP=6095;DPB=6095;DPRA=0;EPP=9488;EPPR=3742.29;GTI=6;LEN=1;MEANALT=1.01064;MQM=59.8966;MQMR=54.4744;NS=94;NUMALT=1;ODDS=0.116931;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155793;QR=61634;RO=1722;RPL=1;RPP=9488;RPPR=3742.29;RPR=4371;RUN=1;SAF=0;SAP=9496.69;SAR=4372;SRF=0;SRP=3742.29;SRR=1722;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:860:-77.7171,-7.22472,0	1/1:90:0,90:0:0:90:3192:-287.449,-27.0927,0	0/1:66:47,19:47:1680:19:681:-41.7044,0,-130.983	1/1:122:1,121:1:36:121:4345:-387.625,-33.1274,0	0/1:83:45,38:45:1620:38:1368:-98.4353,0,-120.744	0/1:59:41,18:41:1463:18:648:-40.8902,0,-113.882	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:136:0,136:0:0:136:4815:-433.498,-40.9401,0	1/1:46:0,46:0:0:46:1639:-147.796,-13.8474,0	1/1:64:0,64:0:0:64:2276:-205.1,-19.2659,0	1/1:13:0,13:0:0:13:459:-41.6441,-3.91339,0	1/1:33:0,33:0:0:33:1188:-107.142,-9.93399,0	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:39:0,39:0:0:39:1396:-125.883,-11.7402,0	1/1:26:0,26:0:0:26:912:-82.3931,-7.82678,0	1/1:43:0,43:0:0:43:1528:-137.81,-12.9443,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:112:0,111:0:0:111:3960:-356.231,-33.4143,0	1/1:89:0,89:0:0:89:3144:-283.185,-26.7917,0	0/1:144:105,39:105:3737:39:1373:-80.5183,0,-291.883	1/1:55:2,53:2:63:53:1887:-164.127,-10.5763,0	0/1:73:33,40:33:1188:40:1414:-105.581,0,-84.9447	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	0/1:304:163,141:163:5851:141:5015:-359.983,0,-434.553	0/1:144:99,45:99:3555:45:1594:-100.4,0,-275.095	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:149:0,149:0:0:149:5331:-479.923,-44.8535,0	1/1:124:8,116:8:288:116:4148:-346.965,-11.2883,0	0/1:91:54,37:54:1927:37:1317:-91.4361,0,-145.959	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.5881	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.775	1/1:3:0,3:0:0:3:108:-10.0742,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:93:0,93:0:0:93:3310:-298.099,-27.9958,0	0/1:221:147,74:147:5265:74:2652:-172.396,0,-405.95	0/1:17:7,10:7:237:10:360:-27.6268,0,-16.4821	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:126:93,33:93:3312:33:1184:-68.9385,0,-259.331	0/1:9:7,2:7:244:2:72:-4.12745,0,-19.4934	0/1:144:98,46:98:3505:46:1639:-104.45,0,-271.378	0/1:31:11,20:11:392:20:693:-53.357,0,-26.2636	1/1:41:0,41:0:0:41:1454:-131.154,-12.3422,0	0/1:71:38,33:38:1368:33:1172:-84.4137,0,-101.872	0/1:120:79,41:79:2836:41:1462:-95.695,0,-218.482	0/1:193:139,54:139:4996:54:1909:-113.973,0,-390.78	1/1:96:0,96:0:0:96:3435:-309.347,-28.8989,0	1/1:97:0,97:0:0:97:3469:-312.42,-29.1999,0	1/1:85:0,85:0:0:85:3042:-274.01,-25.5876,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-19.2162	0/1:92:39,53:39:1400:53:1896:-143.223,0,-97.9677	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9567	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.2434	0/1:82:55,27:55:1971:27:972:-62.9231,0,-152.417	0/1:30:16,14:16:576:14:496:-35.9295,0,-43.1042	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:17:11,6:11:396:6:216:-14.673,0,-30.7859	1/1:52:0,52:0:0:52:1841:-165.967,-15.6536,0	1/1:86:2,84:2:72:84:2971:-260.744,-19.0568,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:206:124,82:124:4444:82:2898:-199.041,0,-337.792	1/1:160:0,160:0:0:160:5734:-516.174,-48.1648,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:44:0,44:0:0:44:1540:-138.889,-13.2453,0	1/1:87:0,87:0:0:87:3105:-279.667,-26.1896,0	0/1:84:58,26:58:2071:26:928:-58.5517,0,-160.915	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:59:1,58:1:36:58:2056:-181.654,-14.1625,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:60:0,60:0:0:60:2143:-193.099,-18.0618,0	0/1:36:17,19:17:604:19:684:-51.0532,0,-43.724	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	1/1:89:0,89:0:0:89:3161:-284.715,-26.7917,0	1/1:101:0,101:0:0:101:3568:-321.241,-30.404,0	1/1:55:1,54:1:36:54:1913:-168.855,-12.9674,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.01335	1/1:58:0,58:0:0:58:2072:-186.746,-17.4597,0	0/1:68:41,27:41:1457:27:968:-66.9673,0,-110.604	1/1:106:0,106:0:0:106:3785:-340.761,-31.9092,0	1/1:99:0,99:0:0:99:3510:-316.109,-29.802,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:43:25,18:25:881:18:644:-45.3463,0,-66.5938	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:27:0,27:0:0:27:955:-86.2639,-8.12781,0	0/1:41:24,17:24:864:17:594:-41.4433,0,-65.544	1/1:27:0,27:0:0:27:959:-86.6236,-8.12781,0	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9126	0/1:26:12,14:12:423:14:500:-37.506,0,-30.53	0/1:34:27,7:27:968:7:252:-12.7939,0,-77.026	1/1:40:0,40:0:0:40:1427:-128.726,-12.0412,0	1/1:50:0,50:0:0:50:1773:-159.851,-15.0515,0
chr08	5349450	.	T	C	30222.5	PASS	AB=0.619949;ABP=346.305;AC=36;AF=0.191489;AN=188;AO=1717;CIGAR=1X;DP=6132;DPB=6132;DPRA=1.42847;EPP=3731.43;EPPR=9590.06;GTI=6;LEN=1;MEANALT=1;MQM=54.477;MQMR=59.8772;NS=94;NUMALT=1;ODDS=0.506586;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61454;QR=156230;RO=4415;RPL=1717;RPP=3731.43;RPPR=9590.06;RPR=0;RUN=1;SAF=0;SAP=3731.43;SAR=1717;SRF=0;SRP=9590.06;SRR=4415;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7186	0/0:90:90,0:90:3176:0:0:0,-27.0927,-286.001	0/1:67:20,47:20:660:47:1692:-131.747,0,-39.448	0/0:125:125,0:125:4372:0:0:0,-37.6287,-393.649	0/1:83:38,45:38:1353:45:1616:-120.387,0,-97.0829	0/1:57:18,39:18:625:39:1396:-108.472,0,-39.4134	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/0:135:135,0:135:4702:0:0:0,-40.639,-423.331	0/0:47:47,0:47:1639:0:0:0,-14.1484,-147.791	0/0:64:64,0:64:2270:0:0:0,-19.2659,-204.559	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.142	0/0:47:47,0:47:1662:0:0:0,-14.1484,-149.863	0/0:47:47,0:47:1650:0:0:0,-14.1484,-148.784	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.243	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.137	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/0:115:115,0:115:4101:0:0:0,-34.6184,-368.94	0/0:90:90,0:90:3187:0:0:0,-27.0927,-287.051	0/1:146:39,107:39:1385:107:3821:-298.738,0,-80.9965	0/0:55:53,2:53:1870:2:72:0,-9.72486,-161.734	0/1:74:41,33:41:1472:33:1188:-84.6436,0,-110.464	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/1:305:142,163:142:5014:163:5845:-433.752,0,-359.589	0/1:146:47,99:47:1673:99:3560:-274.941,0,-106.905	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:150:149,1:149:5250:1:36:0,-41.5562,-469.037	0/0:126:118,8:118:4197:8:288:0,-11.8904,-351.284	0/1:92:38,54:38:1321:54:1940:-146.827,0,-91.2624	0/1:8:1,7:1:36:7:252:-20.5881,0,-1.19003	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:1,4:1:36:4:144:-11.775,0,-2.09312	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.6767	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:93:93,0:93:3303:0:0:0,-27.9958,-297.458	0/1:224:76,148:76:2690:148:5248:-403.531,0,-174.909	0/1:18:11,7:11:377:7:248:-17.1831,0,-28.8394	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:125:33,92:33:1180:92:3300:-258.55,0,-68.8793	0/1:9:2,7:2:72:7:252:-20.132,0,-4.12745	0/1:143:46,97:46:1626:97:3484:-269.795,0,-103.578	0/1:31:20,11:20:720:11:396:-26.6249,0,-55.7968	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/1:73:34,39:34:1201:39:1389:-103.156,0,-86.4185	0/1:118:40,78:40:1402:78:2785:-214.521,0,-90.9479	0/1:192:54,138:54:1865:138:4949:-386.794,0,-110.322	0/0:95:95,0:95:3363:0:0:0,-28.5978,-302.881	0/0:96:96,0:96:3394:0:0:0,-28.8989,-305.672	0/0:85:85,0:85:3011:0:0:0,-25.5875,-271.181	0/1:10:3,7:3:108:7:252:-19.2162,0,-7.06487	0/1:91:53,38:53:1893:38:1349:-93.5782,0,-143.252	0/1:29:11,18:11:396:18:629:-48.1765,0,-27.2529	0/1:18:8,10:8:288:10:360:-27.2434,0,-20.8489	0/1:80:26,54:26:906:54:1928:-149.163,0,-57.7609	0/1:32:14,18:14:481:18:644:-48.6145,0,-33.9765	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:17:6,11:6:216:11:396:-30.7859,0,-14.673	0/0:52:52,0:52:1808:0:0:0,-15.6536,-162.993	0/0:86:84,2:84:3005:2:72:0,-19.0568,-263.742	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:206:82,124:82:2914:124:4426:-336.125,0,-200.478	0/0:160:160,0:160:5724:0:0:0,-48.1648,-515.275	0/0:61:61,0:61:2128:0:0:0,-18.3628,-191.782	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:88:88,0:88:3137:0:0:0,-26.4906,-282.544	0/1:85:27,58:27:934:58:2080:-161.422,0,-58.7812	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.271	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.22	0/1:37:19,18:19:684:18:633:-46.0174,0,-50.7522	0/0:73:73,0:73:2567:0:0:0,-21.9752,-231.276	0/0:91:91,0:91:3171:0:0:0,-27.3937,-285.608	0/0:104:104,0:104:3649:0:0:0,-31.3071,-328.525	0/0:55:54,1:54:1928:1:36:0,-12.9674,-170.207	0/1:7:5,2:5:180:2:72:-4.71232,0,-14.4449	0/0:61:61,0:61:2153:0:0:0,-18.3628,-194.033	0/1:68:28,40:28:1000:40:1436:-108.718,0,-69.8453	0/0:110:110,0:110:3832:0:0:0,-33.1133,-344.515	0/0:102:102,0:102:3619:0:0:0,-30.7051,-325.913	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/1:41:17,24:17:608:24:864:-65.5216,0,-42.7098	0/0:73:73,0:73:2613:0:0:0,-21.9752,-235.416	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0354	0/1:41:17,24:17:612:24:864:-65.544,0,-43.0712	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4361	0/1:12:7,5:7:252:5:180:-12.9126,0,-19.4166	0/1:24:13,11:13:468:11:396:-28.7107,0,-35.2316	0/1:33:7,26:7:252:26:936:-74.4492,0,-13.095	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692
chr08	5351429	.	ATACA	GTACA	21993.3	PASS	AB=0.374146;ABP=526.631;AC=36;AF=0.191489;AN=188;AO=1432;CIGAR=1X4M;DP=11626;DPB=11625.6;DPRA=1.02299;EPP=3095.21;EPPR=22021.7;GTI=5;LEN=1;MEANALT=1.43902;MQM=59.7409;MQMR=59.9983;NS=94;NUMALT=1;ODDS=0.299892;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50923;QR=356405;RO=10152;RPL=48;RPP=2709.61;RPPR=20286.5;RPR=1384;RUN=1;SAF=46;SAP=2725.84;SAR=1386;SRF=204;SRP=20311.5;SRR=9948;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1236:0:0:0,-10.8371,-111.539	0/0:128:128,0:128:4446:0:0:0,-38.5318,-400.319	0/1:164:86,78:86:3028:78:2770:-200.126,0,-223.384	0/0:197:197,0:197:6943:0:0:0,-59.3029,-624.946	0/1:68:49,19:49:1737:19:666:-39.6449,0,-136.145	0/1:43:36,7:36:1255:7:252:-10.0847,0,-100.306	0/0:194:194,0:194:6818:0:0:0,-58.3998,-613.703	0/0:161:160,0:160:5566:0:0:0,-48.1648,-500.719	0/0:92:92,0:92:3182:0:0:0,-27.6948,-286.608	0/0:125:125,0:125:4384:0:0:0,-37.6287,-394.741	0/0:147:147,0:147:5164:0:0:0,-44.2514,-464.909	0/0:141:141,0:141:4929:0:0:0,-42.4452,-443.772	0/0:93:93,0:93:3229:0:0:0,-27.9958,-290.836	0/0:141:140,0:140:4918:0:0:0,-42.1442,-442.422	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.105	0/0:95:95,0:95:3334:0:0:0,-28.5978,-300.281	0/0:104:104,0:104:3657:0:0:0,-31.3071,-329.34	0/0:108:107,0:107:3789:0:0:0,-32.2102,-340.852	0/0:76:75,0:75:2624:0:0:0,-22.5772,-236.05	0/0:248:248,0:248:8773:0:0:0,-74.6554,-789.575	0/0:198:197,0:197:6838:0:0:0,-59.3029,-615.15	0/1:71:32,39:32:1134:39:1387:-103.752,0,-80.9958	0/0:63:63,0:63:2218:0:0:0,-18.9649,-199.885	0/1:79:62,17:62:2190:17:612:-31.6321,0,-173.585	0/0:98:97,0:97:3355:0:0:0,-29.1999,-301.809	0/1:298:198,100:198:6975:100:3571:-231.888,0,-538.121	0/1:281:134,146:134:4696:146:5192:-382.856,0,-338.268	0/0:61:61,0:61:2139:0:0:0,-18.3628,-192.777	0/0:522:521,1:521:18339:1:36:0,-153.539,-1646.54	0/0:140:137,3:137:4825:3:108:0,-32.069,-424.336	0/1:106:79,27:79:2771:27:955:-54.3533,0,-217.725	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3334	0/1:4:1,3:1:35:3:108:-8.87105,0,-2.29451	0/0:5:5,0:5:169:0:0:0,-1.50515,-15.5418	0/0:21:21,0:21:731:0:0:0,-6.32163,-66.1107	0/0:322:320,0:320:11208:0:0:0,-96.3296,-1008.33	0/1:177:141,36:141:4955:36:1264:-60.7729,0,-392.827	0/1:109:72,37:72:2544:37:1310:-85.3878,0,-196.4	0/0:2:2,0:2:71:0:0:0,-0.60206,-6.74206	0/1:144:98,45:98:3423:45:1591:-100.054,0,-264.882	0/1:53:23,30:23:817:30:1072:-80.8379,0,-57.8977	0/1:125:77,48:77:2680:48:1716:-117.073,0,-203.815	0/1:87:56,31:56:1947:31:1097:-72.8501,0,-149.312	0/0:102:102,0:102:3543:0:0:0,-30.7051,-319.085	0/1:76:43,29:43:1525:29:1013:-69.4464,0,-115.51	0/1:142:91,48:91:3173:48:1728:-113.461,0,-243.653	0/1:221:160,60:160:5679:60:2122:-124.655,0,-444.649	0/0:142:142,0:142:4970:0:0:0,-42.7463,-447.457	0/0:194:193,0:193:6792:0:0:0,-58.0988,-611.001	0/0:127:126,0:126:4456:0:0:0,-37.9298,-400.897	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:124:87,37:87:3070:37:1324:-82.118,0,-239.204	0/1:45:18,25:18:626:25:891:-67.2364,0,-43.3917	0/1:13:6,7:6:209:7:252:-19.1156,0,-15.2367	0/1:146:85,61:85:2945:61:2149:-149.676,0,-221.337	0/1:45:23,22:23:825:22:792:-58.0453,0,-61.0274	0/0:11:11,0:11:393:0:0:0,-3.31133,-35.711	0/1:10:8,2:8:285:2:72:-3.82547,0,-22.9843	0/0:76:76,0:76:2664:0:0:0,-22.8783,-240.007	0/0:212:212,0:212:7492:0:0:0,-63.8184,-674.334	0/0:12:12,0:12:408:0:0:0,-3.61236,-37.0458	0/1:226:128,96:128:4553:96:3426:-240.909,0,-342.298	0/0:191:190,0:190:6744:0:0:0,-57.1957,-606.682	0/0:83:83,0:83:2923:0:0:0,-24.9855,-263.307	0/0:169:169,0:169:5898:0:0:0,-50.8741,-530.946	0/0:175:174,0:174:6148:0:0:0,-52.3792,-553.066	0/1:100:21,78:21:738:78:2792:-221.456,0,-36.7063	0/0:81:80,0:80:2799:0:0:0,-24.0824,-251.792	0/0:81:81,0:81:2816:0:0:0,-24.3834,-253.681	0/0:112:110,0:110:3867:0:0:0,-33.1133,-347.871	0/0:57:57,0:57:1968:0:0:0,-17.1587,-177.394	0/0:361:358,2:358:12404:2:72:0,-101.894,-1109.4	0/1:91:60,30:60:2105:30:1056:-67.9828,0,-162.355	0/0:154:153,1:153:5381:1:36:0,-42.7603,-480.833	0/0:251:251,0:251:8872:0:0:0,-75.5585,-798.479	0/0:153:149,1:149:5222:1:36:0,-41.9161,-466.53	0/0:143:143,0:143:5029:0:0:0,-43.0473,-452.764	0/1:17:12,5:12:415:5:180:-11.4283,0,-32.5626	0/0:182:182,0:182:6399:0:0:0,-54.7875,-576.011	0/1:157:126,31:126:4396:31:1097:-51.7596,0,-348.559	0/0:301:301,0:301:10570:0:0:0,-90.61,-951.241	0/0:115:111,0:111:3898:0:0:0,-33.4143,-350.669	0/0:85:85,0:85:2992:0:0:0,-25.5875,-269.514	0/1:93:61,31:61:2165:31:1084:-69.8798,0,-167.133	0/0:174:174,0:174:6153:0:0:0,-52.3792,-553.881	0/0:67:67,0:67:2385:0:0:0,-20.169,-214.91	0/1:116:77,39:77:2687:39:1392:-90.6549,0,-207.16	0/0:117:117,0:117:4126:0:0:0,-35.2205,-371.531	0/1:91:58,32:58:2041:32:1152:-76.5376,0,-156.509	0/1:182:112,69:112:3910:69:2463:-166.948,0,-297.254	0/1:86:37,49:37:1288:49:1727:-129.823,0,-90.3308	0/0:112:112,0:112:3908:0:0:0,-33.7154,-351.922	0/0:154:154,0:154:5441:0:0:0,-46.3586,-489.826
chr08	5351453	.	AA	AG,CG	247820	PASS	AB=0.616035,0.382329;ABP=431.857,444.037;AC=152,36;AF=0.808511,0.191489;AN=188;AO=9835,1408;CIGAR=1M1X,2X;DP=11261;DPB=11261;DPRA=0,0.862017;EPP=21324.7,3060.44;EPPR=7.35324;GTI=4;LEN=1,2;MEANALT=1.56383,2.15789;MQM=59.9991,59.9062;MQMR=60;NS=94;NUMALT=2;ODDS=0.645829;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=351490,49936;QR=72;RO=2;RPL=9831,1408;RPP=21324.7,3060.44;RPPR=7.35324;RPR=4,0;RUN=1,1;SAF=0,0;SAP=21359.4,3060.44;SAR=9835,1408;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34,0:0:0:34,0:1201,0:-108.395,-10.235,0,-108.395,-10.235,-108.395	1/1:127:0,127,0:0:0:127,0:4539,0:-408.677,-38.2308,0,-408.677,-38.2308,-408.677	1/2:158:0,84,74:0:0:84,74:2990,2646:-459.799,-216.11,-190.824,-244.045,0,-221.769	1/1:195:0,195,0:0:0:195,0:6981,0:-628.352,-58.7009,0,-628.352,-58.7009,-628.352	1/2:49:0,35,14:0:0:35,14:1260,501:-144.024,-41.2124,-30.6764,-103.169,0,-98.955	1/2:36:0,29,7:0:0:29,7:1036,250:-105.207,-20.7395,-12.0096,-84.824,0,-82.7168	1/1:188:0,187,0:0:0:187,0:6684,0:-601.277,-56.2926,0,-601.277,-56.2926,-601.277	1/1:156:0,156,0:0:0:156,0:5535,0:-498.275,-46.9607,0,-498.275,-46.9607,-498.275	1/1:87:0,87,0:0:0:87,0:3076,0:-277.066,-26.1896,0,-277.066,-26.1896,-277.066	1/1:123:0,123,0:0:0:123,0:4399,0:-396.083,-37.0267,0,-396.083,-37.0267,-396.083	1/1:145:0,145,0:0:0:145,0:5196,0:-467.779,-43.6494,0,-467.779,-43.6494,-467.779	1/1:138:0,138,0:0:0:138,0:4927,0:-443.58,-41.5421,0,-443.58,-41.5421,-443.58	1/1:92:0,92,0:0:0:92,0:3292,0:-296.499,-27.6948,0,-296.499,-27.6948,-296.499	1/1:138:0,138,0:0:0:138,0:4933,0:-444.119,-41.5421,0,-444.119,-41.5421,-444.119	1/1:91:2,89,0:2:72:89,0:3185,0:-280.035,-20.557,0,-280.637,-26.7917,-286.512	1/1:94:0,94,0:0:0:94,0:3366,0:-303.156,-28.2968,0,-303.156,-28.2968,-303.156	1/1:101:0,101,0:0:0:101,0:3611,0:-325.196,-30.404,0,-325.196,-30.404,-325.196	1/1:109:0,109,0:0:0:109,0:3908,0:-351.913,-32.8123,0,-351.913,-32.8123,-351.913	1/1:73:0,73,0:0:0:73,0:2620,0:-236.047,-21.9752,0,-236.047,-21.9752,-236.047	1/1:228:0,228,0:0:0:228,0:8142,0:-732.798,-68.6348,0,-732.798,-68.6348,-732.798	1/1:196:0,196,0:0:0:196,0:6958,0:-626.291,-59.0019,0,-626.291,-59.0019,-626.291	1/2:62:0,24,38:0:0:24,38:864,1331:-179.149,-108.647,-101.422,-70.8578,0,-59.4187	1/1:53:0,53,0:0:0:53,0:1886,0:-170.018,-15.9546,0,-170.018,-15.9546,-170.018	1/2:77:0,60,17:0:0:60,17:2132,612:-224.021,-50.2959,-32.2341,-174.084,0,-168.966	1/1:95:0,94,0:0:0:94,0:3364,0:-302.617,-28.2968,0,-302.617,-28.2968,-302.617	1/2:285:0,186,99:0:0:186,99:6630,3517:-827.372,-286.937,-230.946,-540.79,0,-510.988	1/2:280:0,133,146:0:0:133,146:4760,5154:-807.859,-419.693,-379.656,-388.161,0,-344.211	1/1:58:0,57,0:0:0:57,0:2040,0:-183.512,-17.1587,0,-183.512,-17.1587,-183.512	1/1:512:0,512,0:0:0:512,0:18320,0:-1648.39,-154.127,0,-1648.39,-154.127,-1648.39	1/1:131:0,128,3:0:0:128,3:4584,108:-412.365,-38.5318,0,-403.553,-29.3598,-402.65	1/2:100:0,74,26:0:0:74,26:2656,928:-292.664,-76.0117,-53.7355,-217.01,0,-209.183	1/2:6:0,1,5:0:0:1,5:36,180:-17.9843,-15.0469,-14.7459,-3.29724,0,-1.79209	1/1:17:0,17,0:0:0:17,0:596,0:-53.9678,-5.11751,0,-53.9678,-5.11751,-53.9678	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:316:0,316,0:0:0:316,0:11328,0:-1019.4,-95.1255,0,-1019.4,-95.1255,-1019.4	1/2:165:0,130,35:0:0:130,35:4631,1248:-479.554,-102.089,-62.9551,-377.821,0,-367.285	1/2:108:0,72,36:0:0:72,36:2570,1254:-311.846,-102.322,-80.6477,-209.876,0,-199.039	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:139:0,98,41:0:0:98,41:3487,1452:-402.818,-118.632,-89.1306,-284.541,0,-272.199	1/2:53:0,23,30:0:0:23,30:828,1080:-156.043,-88.4823,-81.5587,-67.9204,0,-58.8895	1/2:119:0,73,45:0:0:73,45:2611,1579:-341.528,-128.617,-106.642,-213.031,0,-199.484	1/2:86:0,55,31:0:0:55,31:1952,1085:-247.669,-88.6239,-72.0673,-159.396,0,-150.065	1/1:102:0,102,0:0:0:102,0:3651,0:-328.794,-30.7051,0,-328.794,-30.7051,-328.794	1/2:76:0,43,33:0:0:43,33:1544,1186:-223.064,-97.1146,-84.1703,-126.309,0,-116.375	1/2:136:0,88,48:0:0:88,48:3160,1695:-395.973,-138.194,-111.704,-258.134,0,-243.684	1/2:209:0,152,57:0:0:152,57:5434,2026:-608.53,-165.453,-119.696,-443.433,0,-426.275	1/1:139:0,138,0:0:0:138,0:4929,0:-443.4,-41.5421,0,-443.4,-41.5421,-443.4	1/1:186:0,186,0:0:0:186,0:6660,0:-599.475,-55.9916,0,-599.475,-55.9916,-599.475	1/1:124:0,124,0:0:0:124,0:4455,0:-401.118,-37.3277,0,-401.118,-37.3277,-401.118	1/2:10:0,5,5:0:0:5,5:180,180:-29.734,-15.0469,-13.5418,-15.0469,0,-13.5418	1/2:119:0,84,35:0:0:84,35:2999,1247:-346.496,-101.998,-76.7112,-244.855,0,-234.319	1/2:46:0,18,28:0:0:18,28:644,978:-132.419,-79.9014,-74.4828,-52.8721,0,-44.4432	1/2:13:0,6,6:0:0:6,6:216,216:-35.249,-17.6245,-15.8183,-17.6245,0,-15.8183	1/2:141:0,80,60:0:0:80,60:2843,2148:-406.973,-175.304,-151.222,-231.802,0,-213.74	1/2:38:0,20,18:0:0:20,18:716,6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chr08	5357863	.	CTGCGTCA	TTGCGTCA,TTGTATCA	361128	PASS	AB=0.616781,0.373402;ABP=642.555,754.595;AC=151,37;AF=0.803191,0.196809;AN=188;AO=14377,2038;CIGAR=1X7M,1X2M2X3M;DP=16606;DPB=16608.2;DPRA=178.548,1.05761;EPP=31204.9,4428.47;EPPR=16.0391;GTI=4;LEN=1,8;MEANALT=3.16129,3.57778;MQM=59.9707,47.4117;MQMR=60;NS=94;NUMALT=2;ODDS=0.721676;PAIRED=0,0;PAIREDR=0;PAO=5,5;PQA=144.25,144.25;PQR=0;PRO=0;QA=514621,72057;QR=208;RO=6;RPL=14376,2038;RPP=31213.6,4428.47;RPPR=16.0391;RPR=1,0;RUN=1,1;SAF=14376,2038;SAP=31213.6,4428.47;SAR=1,0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/1:228:0,223,0:0:0:223,0:7986,0:-718.423,-67.1297,0,-718.423,-67.1297,-718.423	1/2:214:0,144,69:0:0:144,69:5133,2438:-613.315,-194.903,-151.554,-418.551,0,-397.78	1/1:487:0,481,0:0:0:481,0:17199,0:-1547.24,-144.795,0,-1547.24,-144.795,-1547.24	1/2:85:0,57,27:0:0:57,27:2044,965:-244.677,-77.9588,-60.8001,-166.743,0,-158.615	1/2:55:0,36,10:0:0:36,10:1292,354:-133.59,-28.1891,-17.3521,-105.411,0,-102.401	1/1:180:0,180,0:0:0:180,0:6443,0:-579.955,-54.1854,0,-579.955,-54.1854,-579.955	1/1:328:0,324,0:0:0:324,0:11594,0:-1042.93,-97.5337,0,-1042.93,-97.5337,-1042.93	1/1:85:0,83,0:0:0:83,0:2958,0:-266.151,-24.9855,0,-266.151,-24.9855,-266.151	1/1:244:0,243,0:0:0:243,0:8707,0:-783.26,-73.1503,0,-783.26,-73.1503,-783.26	1/1:98:0,97,0:0:0:97,0:3448,0:-310.172,-29.1999,0,-310.172,-29.1999,-310.172	1/1:178:0,174,0:0:0:174,0:6188,0:-556.721,-52.3792,0,-556.721,-52.3792,-556.721	1/1:121:0,117,0:0:0:117,0:4156,0:-373.873,-35.2205,0,-373.873,-35.2205,-373.873	1/1:138:0,136,0:0:0:136,0:4883,0:-439.339,-40.9401,0,-439.339,-40.9401,-439.339	1/1:163:0,162,0:0:0:162,0:5807,0:-522.373,-48.7669,0,-522.373,-48.7669,-522.373	1/1:113:0,113,0:0:0:113,0:4052,0:-364.866,-34.0164,0,-364.866,-34.0164,-364.866	1/1:161:0,161,0:0:0:161,0:5759,0:-518.425,-48.4658,0,-518.425,-48.4658,-518.425	1/1:149:1,148,0:1:33:148,0:5308,0:-474.509,-41.5543,0,-474.81,-44.5524,-477.478	1/1:65:0,63,0:0:0:63,0:2242,0:-201.702,-18.9649,0,-201.702,-18.9649,-201.702	1/1:424:0,420,0:0:0:420,0:15071,0:-1355.74,-126.433,0,-1355.74,-126.433,-1355.74	1/1:249:0,246,0:0:0:246,0:8798,0:-791.454,-74.0534,0,-791.454,-74.0534,-791.454	1/2:212:0,93,119:0:0:93,119:3328,4212:-612.782,-341.395,-313.399,-271.742,0,-235.92	1/1:179:0,177,0:0:0:177,0:6344,0:-570.665,-53.2823,0,-570.665,-53.2823,-570.665	1/2:204:0,140,63:0:0:140,63:5020,2240:-589.988,-180.539,-138.395,-409.551,0,-390.586	1/1:105:0,104,0:0:0:104,0:3720,0:-334.696,-31.3071,0,-334.696,-31.3071,-334.696	1/2:556:0,338,212:0:0:338,212:12117,7473:-1593.1,-604.827,-503.079,-988.324,0,-924.506	1/2:237:0,157,77:0:0:157,77:5605,2760:-679.692,-222.741,-175.479,-457.005,0,-433.826	1/1:82:0,81,0:0:0:81,0:2908,0:-261.6,-24.3834,0,-261.6,-24.3834,-261.6	1/1:504:1,496,1:1:36:496,1:17796,36:-1597.69,-146.367,0,-1595.07,-146.377,-1597.7	1/1:353:0,346,5:0:0:346,5:12365,180:-1112.32,-104.156,0,-1097.78,-89.6274,-1096.27	1/2:231:0,148,81:0:0:148,81:5312,2862:-664.708,-231.401,-186.849,-433.377,0,-408.994	1/2:17:0,3,13:0:0:3,13:108,461:-46.1631,-37.3476,-36.4445,-8.92438,0,-5.01099	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:7:0,6,1:0:0:6,1:216,35:-20.6706,-3.02258,-1.2164,-17.9843,0,-17.6833	1/1:6:0,6,0:0:0:6,0:210,0:-19.2417,-1.80618,0,-19.2417,-1.80618,-19.2417	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:464:0,461,0:0:0:461,0:16405,0:-1475.46,-138.775,0,-1475.46,-138.775,-1475.46	1/2:301:0,168,131:0:0:168,131:6007,4630:-862.044,-372.234,-321.661,-489.822,0,-450.387	1/2:103:0,68,35:0:0:68,35:2444,1244:-299.317,-99.9298,-79.4598,-199.74,0,-189.204	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:241:0,145,92:0:0:145,92:5191,3266:-685.68,-262.384,-218.734,-423.291,0,-395.597	1/2:61:0,43,18:0:0:43,18:1548,632:-177.612,-51.2947,-38.3504,-126.669,0,-121.25	1/2:225:0,147,77:0:0:147,77:5268,2690:-645.914,-216.261,-172.009,-429.6,0,-406.42	1/2:100:0,68,31:0:0:68,31:2425,1099:-286.28,-88.6023,-68.1323,-197.674,0,-188.342	1/1:135:0,135,0:0:0:135,0:4832,0:-435.028,-40.6391,0,-435.028,-40.6391,-435.028	1/2:155:0,97,57:0:0:97,57:3476,2031:-448.221,-164.726,-135.526,-283.492,0,-266.333	1/2:197:0,125,71:0:0:125,71:4452,2494:-562.297,-199.425,-161.796,-362.862,0,-341.489	1/2:349:1,188,159:1:36:188,159:6746,5601:-999.33,-449.386,-395.73,-547.331,0,-502.405	1/1:260:0,256,0:0:0:256,0:9170,0:-824.91,-77.0637,0,-824.91,-77.0637,-824.91	1/1:215:0,211,1:0:0:211,1:7580,36:-681.86,-63.5173,0,-678.94,-60.6019,-678.639	1/1:340:0,333,0:0:0:333,0:11926,0:-1072.86,-100.243,0,-1072.86,-100.243,-1072.86	2/2:1:0,0,1:0:0:0,1:0,36:-3.4807,-3.4807,-3.4807,-0.30103,-0.30103,0	1/2:212:0,131,80:0:0:131,80:4696,2824:-609.534,-226.522,-187.087,-383.005,0,-358.923	1/2:46:0,27,19:0:0:27,19:959,677:-133.357,-55.2135,-47.0857,-78.4976,0,-72.778	1/2:26:0,10,14:0:0:10,14:360,488:-68.519,-39.1395,-36.1292,-29.3742,0,-25.1598	1/2:177:0,115,61:0: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chr08	5371053	.	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chr08	5412131	.	A	T	30189.9	PASS	AB=0.488643;ABP=7.05489;AC=36;AF=0.191489;AN=188;AO=1789;CIGAR=1X;DP=10334;DPB=10334;DPRA=1.13329;EPP=3767.12;EPPR=17961.2;GTI=2;LEN=1;MEANALT=1.11364;MQM=59.9899;MQMR=59.9967;NS=94;NUMALT=1;ODDS=0.630945;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63927;QR=305373;RO=8532;RPL=1778;RPP=3792.82;RPPR=18081.1;RPR=11;RUN=1;SAF=3;SAP=3861.76;SAR=1786;SRF=14;SRP=18408.6;SRR=8518;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:136:136,0:136:4848:0:0:0,-40.9401,-436.474	0/1:74:48,26:48:1724:26:932:-61.9226,0,-133.169	0/0:194:191,0:191:6828:0:0:0,-57.4967,-614.232	0/1:68:43,25:43:1544:25:896:-60.4903,0,-118.783	0/1:51:28,23:28:1004:23:816:-58.4092,0,-75.3233	0/0:69:69,0:69:2475:0:0:0,-20.7711,-223.003	0/0:221:221,0:221:7882:0:0:0,-66.5276,-709.409	0/0:144:144,0:144:5140:0:0:0,-43.3483,-462.741	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.995	0/0:127:127,0:127:4545:0:0:0,-38.2308,-409.215	0/0:109:109,0:109:3899:0:0:0,-32.8123,-351.103	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:158:158,0:158:5634:0:0:0,-47.5627,-507.179	0/0:101:101,0:101:3627:0:0:0,-30.404,-326.633	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/0:109:109,0:109:3907:0:0:0,-32.8123,-351.822	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:221:221,0:221:7914:0:0:0,-66.5276,-712.283	0/0:144:144,0:144:5123:0:0:0,-43.3483,-461.213	0/1:62:20,42:20:716:42:1508:-117.351,0,-46.1039	0/0:121:119,1:119:4259:1:36:0,-32.8852,-379.89	0/1:142:80,62:80:2868:62:2220:-157.318,0,-215.611	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.441	0/1:272:140,132:140:4954:132:4717:-342.808,0,-364.132	0/1:223:116,107:116:4142:107:3817:-276.597,0,-305.834	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/0:204:203,1:203:7292:1:36:0,-57.8118,-652.729	0/0:200:191,9:191:6860:9:324:0,-30.7001,-587.96	0/1:168:89,79:89:3200:79:2822:-203.647,0,-237.649	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:294:294,0:294:10497:0:0:0,-88.5028,-944.646	0/1:212:116,96:116:4168:96:3417:-243.925,0,-311.483	0/1:94:45,49:45:1611:49:1756:-130.027,0,-116.983	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:194:110,84:110:3952:84:2978:-209.852,0,-297.47	0/1:35:23,12:23:820:12:432:-28.6851,0,-63.5865	0/1:157:99,58:99:3539:58:2084:-140.568,0,-271.457	0/1:131:65,66:65:2336:66:2364:-173.583,0,-171.064	0/0:80:80,0:80:2871:0:0:0,-24.0824,-258.626	0/1:101:53,48:53:1896:48:1716:-124.322,0,-140.514	0/1:73:36,37:36:1288:37:1298:-95.142,0,-94.2484	0/1:142:82,60:82:2935:60:2144:-150.481,0,-221.637	0/0:107:107,0:107:3832:0:0:0,-32.2102,-345.077	0/0:132:130,2:130:4651:2:72:0,-32.8992,-411.915	0/0:103:102,0:102:3660:0:0:0,-30.7051,-329.243	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:153:74,79:74:2652:79:2821:-208.07,0,-192.869	0/1:48:28,20:28:1008:20:720:-50.6793,0,-76.5869	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	0/1:114:64,49:64:2265:49:1756:-123.948,0,-169.735	0/1:61:24,37:24:842:37:1332:-101.82,0,-57.7342	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:109:109,0:109:3840:0:0:0,-32.8123,-345.797	0/0:154:154,0:154:5532:0:0:0,-46.3586,-498.003	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:141:68,73:68:2444:73:2605:-192.251,0,-177.769	0/0:281:281,0:281:10075:0:0:0,-84.5894,-906.681	0/0:142:141,1:141:5047:1:36:0,-39.148,-450.741	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/0:162:161,1:161:5745:1:21:0,-46.6703,-515.069	0/1:122:35,87:35:1256:87:3120:-244.301,0,-76.6196	0/0:65:65,0:65:2331:0:0:0,-19.5669,-210.049	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/0:164:163,0:163:5848:0:0:0,-49.0679,-526.07	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:118:118,0:118:4211:0:0:0,-35.5215,-379.171	0/1:82:37,45:37:1319:45:1604:-119.965,0,-94.3267	0/0:235:231,1:231:8241:1:36:0,-66.6005,-738.105	0/0:178:178,0:178:6363:0:0:0,-53.5833,-572.761	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/0:154:147,7:147:5258:7:252:0,-23.3297,-450.327	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.82	0/1:61:32,29:32:1144:29:1040:-75.5515,0,-84.9067	0/0:199:198,1:198:7099:1:36:0,-56.3067,-635.369	0/0:166:166,0:166:5964:0:0:0,-49.971,-536.864	0/0:102:102,0:102:3653:0:0:0,-30.7051,-328.972	0/1:113:62,51:62:2228:51:1836:-131.504,0,-166.767	0/0:176:175,0:175:6288:0:0:0,-52.6802,-565.65	0/0:55:55,0:55:1958:0:0:0,-16.5566,-176.494	0/1:112:54,58:54:1940:58:2076:-153.395,0,-141.161	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:96:43,52:43:1548:52:1872:-139.801,0,-110.655	0/1:158:67,90:67:2393:90:3197:-240.329,0,-168.004	0/1:111:39,72:39:1400:72:2578:-198.855,0,-92.8849	0/0:141:141,0:141:5048:0:0:0,-42.4452,-454.465	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.882
chr08	5419042	.	A	G	178941	PASS	AB=0.481802;ABP=14.312;AC=151;AF=0.803191;AN=188;AO=8152;CIGAR=1X;DP=10208;DPB=10208;DPRA=21.9419;EPP=17221.8;EPPR=4361.76;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.9644;MQMR=59.9961;NS=94;NUMALT=1;ODDS=1.24811;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=291402;QR=73607;RO=2055;RPL=8096;RPP=17221.8;RPPR=4361.76;RPR=56;RUN=1;SAF=0;SAP=17704.9;SAR=8152;SRF=0;SRP=4465.39;SRR=2055;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:177:0,177:0:0:177:6335:-570.133,-53.2823,0	0/1:144:81,63:81:2882:63:2239:-158.425,0,-216.265	1/1:222:0,222:0:0:222:7967:-717.049,-66.8287,0	0/1:136:65,71:65:2332:71:2528:-186.832,0,-169.199	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	1/1:168:0,168:0:0:168:5999:-540.016,-50.573,0	1/1:173:0,173:0:0:173:6193:-557.466,-52.0782,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:90:0,90:0:0:90:3215:-289.562,-27.0927,0	1/1:107:0,107:0:0:107:3813:-343.35,-32.2102,0	1/1:99:0,99:0:0:99:3555:-320.157,-29.802,0	1/1:78:0,78:0:0:78:2792:-251.517,-23.4803,0	1/1:153:0,153:0:0:153:5442:-489.908,-46.0576,0	1/1:69:0,69:0:0:69:2451:-220.843,-20.7711,0	1/1:75:0,75:0:0:75:2663:-239.914,-22.5773,0	1/1:113:0,113:0:0:113:4051:-364.69,-34.0164,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:183:0,183:0:0:183:6575:-591.827,-55.0885,0	1/1:144:0,144:0:0:144:5159:-464.45,-43.3483,0	0/1:137:95,42:95:3397:42:1503:-94.3227,0,-264.698	1/1:81:0,81:0:0:81:2899:-261.145,-24.3834,0	0/1:175:108,67:108:3876:67:2408:-164.296,0,-296.354	1/1:69:1,68:1:36:68:2428:-215.178,-17.1728,0	0/1:323:160,163:160:5756:163:5860:-430.248,0,-420.919	0/1:217:98,119:98:3520:119:4257:-317.984,0,-251.685	1/1:48:0,47:0:0:47:1680:-151.274,-14.1484,0	1/1:220:0,220:0:0:220:7852:-706.708,-66.2266,0	1/1:189:6,183:6:216:183:6531:-568.077,-37.1042,0	0/1:95:41,54:41:1476:54:1944:-146.638,0,-104.538	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:267:1,266:1:36:266:9486:-850.104,-76.7767,0	0/1:248:115,133:115:4107:133:4750:-353.002,0,-295.16	0/1:98:39,59:39:1396:59:2116:-161.207,0,-96.4382	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:145:62,83:62:2220:83:2980:-224.769,0,-156.415	0/1:40:15,25:15:540:25:892:-68.5579,0,-36.8953	0/1:191:100,91:100:3588:91:3226:-233.063,0,-265.629	0/1:122:57,65:57:2039:65:2319:-172.244,0,-147.056	1/1:92:0,92:0:0:92:3287:-296.041,-27.6948,0	0/1:122:65,57:65:2294:57:2044:-147.492,0,-169.993	0/1:123:89,34:89:3196:34:1224:-73.4404,0,-250.836	0/1:176:100,76:100:3596:76:2719:-191.972,0,-270.864	1/1:136:0,136:0:0:136:4865:-438.002,-40.9401,0	1/1:149:0,149:0:0:149:5310:-478.036,-44.8535,0	1/1:117:0,117:0:0:117:4187:-376.97,-35.2205,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:112:62,50:62:2228:50:1792:-127.847,0,-167.068	0/1:45:24,21:24:864:21:756:-54.8209,0,-64.5362	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:150:91,59:91:3255:59:2116:-145.554,0,-248.016	0/1:51:30,21:30:1080:21:752:-52.6537,0,-82.1607	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:23:5,18:5:180:18:648:-51.7282,0,-9.62837	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:155:0,155:0:0:155:5552:-499.804,-46.6597,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:256:143,113:143:5125:113:4000:-283.126,0,-384.325	1/1:194:1,193:1:36:193:6906:-618.001,-54.8015,0	1/1:58:0,58:0:0:58:2071:-186.66,-17.4597,0	1/1:69:0,69:0:0:69:2444:-220.215,-20.7711,0	1/1:245:1,244:1:36:244:8705:-779.839,-70.1541,0	0/1:70:44,26:44:1556:26:928:-62.7662,0,-119.257	1/1:43:1,42:1:36:42:1500:-131.696,-9.34602,0	1/1:51:1,50:1:36:50:1774:-156.343,-11.7543,0	1/1:126:1,125:1:36:125:4480:-399.771,-34.3315,0	1/1:23:0,23:0:0:23:801:-72.4067,-6.92369,0	1/1:51:0,51:0:0:51:1816:-163.72,-15.3525,0	0/1:90:42,48:42:1504:48:1720:-127.993,0,-108.562	1/1:125:0,125:0:0:125:4453:-400.941,-37.6288,0	1/1:174:0,174:0:0:174:6222:-560.044,-52.3792,0	1/1:147:0,147:0:0:147:5255:-473.087,-44.2514,0	1/1:144:0,144:0:0:144:5145:-463.192,-43.3483,0	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	1/1:103:1,102:1:32:102:3651:-325.594,-27.8068,0	0/1:116:52,64:52:1864:64:2263:-169.008,0,-133.12	1/1:184:0,184:0:0:184:6579:-592.19,-55.3895,0	1/1:147:0,147:0:0:147:5247:-472.36,-44.2514,0	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	0/1:128:63,65:63:2241:65:2327:-171.157,0,-163.42	1/1:219:0,219:0:0:219:7857:-707.151,-65.9256,0	1/1:60:0,60:0:0:60:2139:-192.777,-18.0618,0	0/1:87:42,45:42:1500:45:1612:-119.18,0,-109.105	1/1:104:0,104:0:0:104:3708:-333.917,-31.3071,0	0/1:49:20,29:20:711:29:1040:-79.1639,0,-49.5652	0/1:129:57,72:57:2052:72:2572:-192.897,0,-146.118	0/1:94:55,39:55:1980:39:1404:-98.3625,0,-150.178	1/1:136:0,136:0:0:136:4863:-437.823,-40.9401,0	1/1:134:0,134:0:0:134:4792:-431.424,-40.338,0
chr08	5419064	.	T	G	34539	PASS	AB=0.513493;ABP=9.22177;AC=37;AF=0.196809;AN=188;AO=2034;CIGAR=1X;DP=10261;DPB=10261;DPRA=1.08568;EPP=4419.79;EPPR=17865.5;GTI=1;LEN=1;MEANALT=1.02381;MQM=59.999;MQMR=59.9593;NS=94;NUMALT=1;ODDS=2.25714;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72786;QR=294832;RO=8226;RPL=2034;RPP=4419.79;RPPR=17865.5;RPR=0;RUN=1;SAF=0;SAP=4419.79;SAR=2034;SRF=0;SRP=17865.5;SRR=8226;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:180:180,0:180:6449:0:0:0,-54.1854,-580.386	0/1:146:64,82:64:2296:82:2929:-219.894,0,-162.951	0/0:228:228,0:228:8177:0:0:0,-68.6348,-735.94	0/1:136:72,64:72:2588:64:2296:-165.961,0,-192.228	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:171:171,0:171:6144:0:0:0,-51.4761,-553.056	0/0:173:173,0:173:6194:0:0:0,-52.0782,-557.553	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.372	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.615	0/0:98:98,0:98:3509:0:0:0,-29.5009,-316.018	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.757	0/0:157:157,0:157:5624:0:0:0,-47.2617,-506.279	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.321	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.453	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.6	0/0:185:185,0:185:6636:0:0:0,-55.6905,-597.317	0/0:145:145,0:145:5173:0:0:0,-43.6493,-465.71	0/1:136:42,94:42:1508:94:3368:-262.396,0,-95.0745	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/1:177:69,107:69:2472:107:3844:-292.962,0,-169.54	0/0:70:69,1:69:2468:1:36:0,-17.4738,-218.776	0/1:322:166,156:166:5952:156:5585:-405.84,0,-438.828	0/1:218:122,96:122:4373:96:3444:-244.548,0,-328.117	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:220:220,0:220:7853:0:0:0,-66.2266,-706.799	0/0:192:185,7:185:6629:7:248:0,-35.1336,-574.018	0/1:96:55,41:55:1964:41:1464:-103.157,0,-148.136	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:265:265,0:265:9504:0:0:0,-79.7729,-855.315	0/1:246:132,114:132:4721:114:4053:-290.905,0,-350.994	0/1:99:60,39:60:2152:39:1400:-96.4972,0,-164.145	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:148:84,64:84:3024:64:2292:-161.989,0,-227.823	0/1:37:23,14:23:820:14:504:-34.56,0,-62.9844	0/1:192:93,99:93:3344:99:3534:-260.468,0,-243.373	0/1:122:65,57:65:2336:57:2029:-146.155,0,-173.774	0/0:91:91,0:91:3276:0:0:0,-27.3937,-295.05	0/1:121:58,63:58:2069:63:2260:-167.238,0,-150.041	0/1:121:34,87:34:1224:87:3112:-243.882,0,-74.0424	0/1:175:77,98:77:2764:98:3524:-264.688,0,-196.321	0/0:138:138,0:138:4910:0:0:0,-41.5421,-442.051	0/0:151:151,0:151:5428:0:0:0,-45.4555,-488.647	0/0:118:118,0:118:4225:0:0:0,-35.5215,-380.386	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:111:49,62:49:1756:62:2228:-167.37,0,-124.91	0/1:46:22,24:22:784:24:864:-64.2352,0,-57.0365	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:150:58,92:58:2080:92:3273:-249.634,0,-142.316	0/1:52:22,30:22:792:30:1072:-81.1389,0,-55.9521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:24:19,5:19:684:5:180:-9.32734,0,-54.6656	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:154:154,0:154:5532:0:0:0,-46.3586,-497.575	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:253:115,138:115:4113:138:4939:-368.498,0,-294.185	0/0:198:197,1:197:7065:1:36:0,-56.0057,-632.3	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:247:246,1:246:8817:1:36:0,-70.7561,-789.909	0/1:70:26,44:26:936:44:1567:-120.25,0,-63.4874	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:51:50,1:50:1796:1:36:0,-11.7543,-158.321	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.97	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.438	0/1:87:46,41:46:1652:41:1464:-105.866,0,-122.779	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.846	0/0:172:172,0:172:6158:0:0:0,-51.7772,-554.283	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.451	0/0:147:147,0:147:5249:0:0:0,-44.2514,-472.547	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:103:102,1:102:3664:1:36:0,-27.4078,-326.363	0/1:115:63,52:63:2252:52:1868:-133.781,0,-168.307	0/0:187:187,0:187:6682:0:0:0,-56.2926,-601.446	0/0:147:147,0:147:5288:0:0:0,-44.2514,-476.044	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/1:130:67,63:67:2393:63:2256:-164.169,0,-176.492	0/0:222:222,0:222:7972:0:0:0,-66.8287,-717.491	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:86:44,42:44:1580:42:1489:-108.414,0,-116.603	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.358	0/1:50:30,20:30:1080:20:716:-49.7162,0,-82.4618	0/1:129:72,57:72:2580:57:2040:-145.039,0,-193.615	0/1:97:40,57:40:1428:57:2048:-155.392,0,-99.6176	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871	0/0:137:137,0:137:4912:0:0:0,-41.2411,-442.214
chr08	5435311	.	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chr08	5435341	.	T	C	221032	PASS	AB=0.47997;ABP=16.7549;AC=153;AF=0.81383;AN=188;AO=8847;CIGAR=1X;DP=10921;DPB=10921;DPRA=0;EPP=10204.7;EPPR=1406.21;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9854;MQMR=59.9923;NS=94;NUMALT=1;ODDS=4.50363;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=314666;QR=74003;RO=2068;RPL=7647;RPP=10204.7;RPPR=1406.21;RPR=1200;RUN=1;SAF=8847;SAP=19214;SAR=0;SRF=2068;SRP=4493.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1557:-140.421,-13.2453,0	1/1:227:0,227:0:0:227:8080:-727.22,-68.3338,0	0/1:139:66,73:66:2359:73:2602:-192.586,0,-170.725	1/1:281:0,281:0:0:281:9989:-898.953,-84.5894,0	0/1:116:52,64:52:1864:64:2287:-171.172,0,-133.12	0/1:39:26,13:26:936:13:464:-30.3573,0,-72.8193	1/1:146:0,146:0:0:146:5194:-467.598,-43.9504,0	1/1:152:0,152:0:0:152:5429:-488.739,-45.7566,0	1/1:110:0,110:0:0:110:3918:-352.809,-33.1133,0	1/1:152:0,150:0:0:150:5351:-481.355,-45.1545,0	1/1:56:0,56:0:0:56:1976:-178.112,-16.8577,0	1/1:78:0,78:0:0:78:2720:-245.034,-23.4803,0	1/1:80:0,80:0:0:80:2829:-254.846,-24.0824,0	1/1:121:1,120:1:36:120:4251:-379.172,-32.8264,0	1/1:88:0,88:0:0:88:3114:-280.488,-26.4906,0	1/1:82:0,82:0:0:82:2918:-262.855,-24.6845,0	1/1:91:0,91:0:0:91:3241:-291.911,-27.3937,0	1/1:81:0,81:0:0:81:2877:-259.166,-24.3834,0	1/1:38:0,38:0:0:38:1349:-121.708,-11.4391,0	1/1:220:0,220:0:0:220:7851:-706.62,-66.2266,0	1/1:210:0,210:0:0:210:7469:-672.258,-63.2163,0	0/1:109:81,28:81:2904:28:1004:-57.8636,0,-228.783	1/1:85:0,85:0:0:85:3018:-271.851,-25.5876,0	0/1:224:104,120:104:3728:120:4271:-317.139,0,-268.289	1/1:85:0,85:0:0:85:3018:-271.851,-25.5876,0	0/1:392:225,167:225:8072:167:5972:-419.584,0,-608.492	0/1:145:91,54:91:3257:54:1927:-130.057,0,-249.697	1/1:83:0,83:0:0:83:2898:-261.05,-24.9855,0	1/1:264:0,264:0:0:264:9427:-848.392,-79.4719,0	1/1:238:9,229:9:324:229:8121:-701.406,-42.1393,0	0/1:147:78,69:78:2792:69:2467:-178.032,0,-207.269	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:245:0,245:0:0:245:8743:-786.86,-73.7524,0	0/1:202:101,101:101:3628:101:3607:-264.028,0,-265.916	0/1:62:33,29:33:1165:29:1022:-73.627,0,-86.4911	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:137:58,79:58:2079:79:2823:-213.068,0,-146.138	0/1:37:14,23:14:504:23:809:-61.9902,0,-34.56	0/1:166:89,77:89:3184:77:2714:-194.531,0,-236.807	0/1:103:59,44:59:2096:44:1580:-111.485,0,-157.901	1/1:98:0,98:0:0:98:3452:-310.893,-29.5009,0	0/1:109:63,46:63:2247:46:1642:-115.256,0,-169.681	0/1:130:64,66:64:2300:66:2357:-173.254,0,-168.127	0/1:217:123,94:123:4404:94:3362:-237.473,0,-331.209	1/1:149:1,148:1:36:148:5268:-470.659,-41.2552,0	1/1:162:0,162:0:0:162:5760:-518.506,-48.7669,0	1/1:171:1,170:1:32:170:6032:-539.788,-48.2768,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:124:45,78:45:1616:78:2802:-215.182,0,-108.491	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:143:71,72:71:2552:72:2567:-188.232,0,-186.883	0/1:55:18,37:18:648:37:1305:-101.194,0,-42.0952	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	1/1:81:0,81:0:0:81:2882:-259.616,-24.3834,0	1/1:110:0,110:0:0:110:3891:-350.383,-33.1133,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:309:137,172:137:4908:172:6109:-456.892,0,-348.853	1/1:248:3,245:3:108:245:8678:-770.918,-64.5803,0	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:99:0,99:0:0:99:3509:-316.021,-29.802,0	1/1:212:0,212:0:0:212:7523:-677.118,-63.8184,0	0/1:134:84,50:84:2985:50:1784:-120.505,0,-228.542	1/1:45:0,45:0:0:45:1601:-144.378,-13.5464,0	1/1:133:0,133:0:0:133:4684:-421.719,-40.037,0	1/1:98:0,98:0:0:98:3481:-313.501,-29.5009,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:92:1,91:1:27:91:3231:-288.314,-24.995,0	0/1:81:41,40:41:1468:40:1428:-104.434,0,-108.033	1/1:181:1,180:1:36:180:6394:-571.952,-50.8882,0	1/1:218:0,217:0:0:217:7762:-698.249,-65.3235,0	1/1:67:0,66:0:0:66:2336:-210.138,-19.868,0	1/1:95:0,94:0:0:94:3334:-299.919,-28.2968,0	0/1:25:14,11:14:504:11:388:-27.7316,0,-38.1723	1/1:260:0,260:0:0:260:9265:-833.815,-78.2678,0	0/1:108:63,45:63:2264:45:1608:-112.499,0,-171.511	1/1:287:0,287:0:0:287:10225:-920.18,-86.3956,0	1/1:117:0,117:0:0:117:4179:-376.293,-35.2205,0	1/1:72:0,72:0:0:72:2561:-230.74,-21.6742,0	0/1:142:74,68:74:2636:68:2405:-173.957,0,-194.738	1/1:199:0,199:0:0:199:7117:-640.584,-59.905,0	1/1:36:0,36:0:0:36:1268:-114.42,-10.8371,0	0/1:89:48,41:48:1720:41:1456:-104.543,0,-128.294	1/1:88:0,88:0:0:88:3120:-281.027,-26.4906,0	0/1:35:19,16:19:676:16:572:-41.2774,0,-50.6319	0/1:92:37,55:37:1315:55:1944:-147.539,0,-90.9563	0/1:75:51,24:51:1805:24:856:-54.7839,0,-140.153	1/1:92:0,92:0:0:92:3268:-294.34,-27.6948,0	1/1:158:1,157:1:32:157:5597:-500.641,-44.3634,0
chr08	5435351	.	C	T	34752.3	PASS	AB=0.518207;ABP=14.3178;AC=35;AF=0.18617;AN=188;AO=2051;CIGAR=1X;DP=10917;DPB=10917;DPRA=1.12827;EPP=4448.02;EPPR=19246.6;GTI=0;LEN=1;MEANALT=1.06818;MQM=59.9927;MQMR=59.9822;NS=94;NUMALT=1;ODDS=3.15036;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73198;QR=314406;RO=8862;RPL=2050;RPP=4448.02;RPPR=19246.6;RPR=1;RUN=1;SAF=2051;SAP=4456.7;SAR=0;SRF=8862;SRP=19246.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/0:229:229,0:229:8150:0:0:0,-68.9359,-733.515	0/1:143:78,65:78:2719:65:2313:-165.381,0,-201.902	0/0:278:278,0:278:9865:0:0:0,-83.6863,-887.799	0/1:119:64,55:64:2287:55:1971:-141.842,0,-170.268	0/1:40:14,26:14:500:26:936:-72.5183,0,-33.295	0/0:147:147,0:147:5260:0:0:0,-44.2514,-473.536	0/0:155:155,0:155:5505:0:0:0,-46.6596,-495.574	0/0:112:112,0:112:3973:0:0:0,-33.7154,-357.756	0/0:152:150,2:150:5321:2:72:0,-38.9198,-472.171	0/0:55:55,0:55:1944:0:0:0,-16.5566,-175.234	0/0:78:78,0:78:2750:0:0:0,-23.4803,-247.733	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.018	0/0:121:121,0:121:4296:0:0:0,-36.4246,-386.818	0/0:88:88,0:88:3060:0:0:0,-26.4906,-275.628	0/0:82:82,0:82:2905:0:0:0,-24.6845,-261.686	0/0:92:92,0:92:3276:0:0:0,-27.6948,-295.059	0/0:81:81,0:81:2886:0:0:0,-24.3834,-259.976	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:218:217,1:217:7691:1:36:0,-62.0263,-688.631	0/0:210:210,0:210:7508:0:0:0,-63.2163,-675.758	0/1:110:28,82:28:995:82:2940:-231.721,0,-56.7507	0/0:87:87,0:87:3081:0:0:0,-26.1896,-277.516	0/1:224:119,105:119:4216:105:3730:-268.47,0,-312.189	0/0:87:86,1:86:3054:1:36:0,-22.5913,-271.489	0/1:393:166,227:166:5931:227:8094:-610.174,0,-415.594	0/1:143:52,91:52:1845:91:3268:-251.29,0,-123.281	0/0:82:82,0:82:2901:0:0:0,-24.6845,-261.32	0/0:263:263,0:263:9390:0:0:0,-79.1709,-845.062	0/0:238:232,6:232:8237:6:216:0,-51.8546,-721.545	0/1:146:68,78:68:2411:78:2768:-205.409,0,-173.294	0/1:10:8,2:8:270:2:72:-3.82642,0,-21.6174	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:244:244,0:244:8629:0:0:0,-73.4513,-776.613	0/1:201:102,99:102:3628:99:3552:-259.381,0,-266.218	0/1:60:28,32:28:972:32:1135:-84.3963,0,-69.7274	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:138:79,59:79:2828:59:2108:-148.446,0,-213.217	0/1:39:25,14:25:863:14:500:-33.596,0,-66.2412	0/1:165:73,92:73:2583:92:3292:-246.823,0,-183.047	0/1:102:44,58:44:1561:58:2075:-156.315,0,-110.075	0/0:98:98,0:98:3441:0:0:0,-29.5009,-309.901	0/1:110:47,63:47:1684:63:2247:-169.38,0,-118.734	0/1:130:67,63:67:2388:63:2254:-163.988,0,-176.041	0/1:214:94,120:94:3356:120:4263:-319.428,0,-237.834	0/0:148:147,1:147:5246:1:32:0,-41.3531,-469.078	0/0:160:160,0:160:5670:0:0:0,-48.1648,-510.334	0/0:174:172,1:172:6115:1:36:0,-48.8397,-546.854	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:122:78,44:78:2772:44:1574:-105.226,0,-212.994	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/1:140:70,70:70:2478:70:2503:-183.378,0,-181.127	0/1:55:37,18:37:1287:18:639:-41.2816,0,-99.5706	0/0:23:23,0:23:789:0:0:0,-6.92369,-71.3215	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:112:112,0:112:3961:0:0:0,-33.7154,-356.681	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:306:173,133:173:6166:133:4759:-336.352,0,-462.92	0/0:246:244,2:244:8699:2:72:0,-67.2167,-776.063	0/0:84:84,0:84:2989:0:0:0,-25.2865,-269.241	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.486	0/0:208:208,0:208:7408:0:0:0,-62.6142,-666.769	0/1:133:50,83:50:1756:83:2910:-222.097,0,-118.284	0/0:45:45,0:45:1569:0:0:0,-13.5463,-141.496	0/0:137:137,0:137:4857:0:0:0,-41.2411,-437.284	0/0:99:99,0:99:3482:0:0:0,-29.802,-313.59	0/0:6:5,0:5:180:0:0:0,-1.50515,-16.1922	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/1:79:40,39:40:1423:39:1404:-102.878,0,-104.585	0/0:178:176,1:176:6281:1:36:0,-50.0439,-561.777	0/0:220:220,0:220:7743:0:0:0,-66.2266,-696.902	0/0:71:70,1:70:2430:1:36:0,-17.7749,-215.352	0/0:95:95,0:95:3399:0:0:0,-28.5978,-305.348	0/1:24:10,13:10:337:13:468:-35.1761,0,-23.3733	0/0:256:256,0:256:9160:0:0:0,-77.0637,-824.369	0/1:103:43,60:43:1544:60:2143:-162.131,0,-108.247	0/0:285:285,0:285:10136:0:0:0,-85.7935,-912.171	0/0:120:120,0:120:4240:0:0:0,-36.1236,-381.78	0/0:73:73,0:73:2573:0:0:0,-21.9752,-231.817	0/1:143:70,73:70:2452:73:2605:-191.651,0,-177.885	0/0:198:198,0:198:6950:0:0:0,-59.6039,-625.573	0/0:37:37,0:37:1306:0:0:0,-11.1381,-117.84	0/1:88:41,47:41:1472:47:1679:-124.906,0,-106.285	0/0:87:87,0:87:3082:0:0:0,-26.1896,-277.609	0/1:35:16,19:16:546:19:684:-51.3543,0,-38.9232	0/1:92:56,36:56:1961:36:1292:-88.889,0,-149.066	0/1:71:22,49:22:788:49:1728:-134.429,0,-49.8717	0/0:93:93,0:93:3257:0:0:0,-27.9958,-293.349	0/0:157:157,0:157:5567:0:0:0,-47.2617,-501.146
chr08	5465331	.	C	A	205542	PASS	AB=0.456133;ABP=80.549;AC=152;AF=0.808511;AN=188;AO=10453;CIGAR=1X;DP=13022;DPB=13022;DPRA=0;EPP=22597.3;EPPR=5542.44;GTI=0;LEN=1;MEANALT=1.10638;MQM=39.4239;MQMR=49.1886;NS=94;NUMALT=1;ODDS=4.00532;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=371464;QR=90146;RO=2555;RPL=5114;RPP=13.527;RPPR=3.3851;RPR=5339;RUN=1;SAF=5126;SAP=11.4031;SAR=5327;SRF=1289;SRP=3.45989;SRR=1266;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:121:0,121:0:0:121:4255:-306.543,-36.4246,0	1/1:106:0,106:0:0:106:3750:-278.632,-31.9092,0	0/1:286:184,102:184:6510:102:3593:-160.755,0,-473.913	1/1:278:1,275:1:32:275:9776:-686.941,-80.1993,0	0/1:107:58,49:58:2053:49:1727:-111.245,0,-148.57	0/1:63:39,24:39:1396:24:847:-34.0303,0,-100.978	1/1:96:0,95:0:0:95:3331:-229.055,-28.5979,0	1/1:283:0,282:0:0:282:10025:-672.825,-84.8905,0	1/1:222:0,222:0:0:222:7833:-533.479,-66.8287,0	1/1:117:0,117:0:0:117:4173:-281.762,-35.2205,0	1/1:114:0,114:0:0:114:4042:-227.258,-34.3174,0	1/1:187:0,187:0:0:187:6616:-431.027,-56.2926,0	1/1:140:0,140:0:0:140:4930:-317.257,-42.1442,0	1/1:163:0,163:0:0:163:5783:-317.964,-49.0679,0	1/1:170:0,170:0:0:170:6068:-394.025,-51.1751,0	1/1:138:0,138:0:0:138:4910:-318.168,-41.5421,0	1/1:87:0,87:0:0:87:3090:-192.728,-26.1896,0	1/1:80:0,80:0:0:80:2864:-198.532,-24.0824,0	1/1:52:0,52:0:0:52:1859:-110.487,-15.6536,0	1/1:212:0,212:0:0:212:7567:-586.237,-63.8184,0	1/1:282:2,280:2:72:280:9940:-681.182,-78.0537,0	0/1:113:86,27:86:3009:27:938:-38.7177,0,-233.56	1/1:178:0,178:0:0:178:6356:-428.295,-53.5833,0	0/1:122:69,53:69:2451:53:1884:-112.329,0,-179.773	1/1:148:0,148:0:0:148:5265:-391.918,-44.5524,0	0/1:349:190,159:190:6759:159:5659:-283.37,0,-491.783	0/1:273:134,139:134:4670:139:4925:-236.018,0,-329.921	1/1:61:0,61:0:0:61:2145:-151.479,-18.3628,0	1/1:323:0,323:0:0:323:11471:-814.002,-97.2327,0	1/1:91:6,85:6:208:85:3039:-184.58,-8.88675,0	0/1:126:65,61:65:2287:61:2163:-118.49,0,-163.859	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.3347	1/1:15:0,15:0:0:15:540:-33.4032,-4.51545,0	0/1:5:3,2:3:104:2:68:-4.95256,0,-7.61634	1/1:9:0,9:0:0:9:324:-23.7615,-2.70927,0	1/1:18:0,18:0:0:18:640:-41.5148,-5.41854,0	1/1:311:0,311:0:0:311:11037:-795.098,-93.6203,0	0/1:130:61,69:61:2130:69:2480:-143.287,0,-150.046	0/1:92:46,46:46:1608:46:1652:-55.4747,0,-109.612	1/1:2:0,2:0:0:2:72:-3.21988,-0.60206,0	0/1:195:107,87:107:3785:87:3099:-163.914,0,-272.266	0/1:64:30,34:30:1046:34:1197:-55.0829,0,-70.9943	0/1:280:154,126:154:5468:126:4497:-228.337,0,-392.317	0/1:115:52,63:52:1845:63:2226:-113.967,0,-127.944	1/1:103:0,103:0:0:103:3675:-260.506,-31.0061,0	0/1:90:53,37:53:1876:37:1324:-61.5432,0,-138.012	0/1:122:57,65:57:2023:65:2267:-127.704,0,-138.531	0/1:215:105,109:105:3723:109:3878:-214.022,0,-261.384	1/1:105:0,105:0:0:105:3713:-253.908,-31.6082,0	1/1:193:0,193:0:0:193:6850:-445.503,-58.0988,0	1/1:100:0,100:0:0:100:3557:-248.509,-30.103,0	0/1:7:5,2:5:176:2:72:-1.39336,0,-13.9525	0/1:153:88,65:88:3113:65:2328:-111.64,0,-220.206	0/1:81:50,31:50:1758:31:1116:-59.0855,0,-132.246	0/1:5:2,3:2:72:3:108:-6.60852,0,-5.33157	0/1:175:98,77:98:3468:77:2717:-138.309,0,-252.724	0/1:92:37,55:37:1295:55:1956:-128.92,0,-86.5075	1/1:7:0,6:0:0:6:208:-17.319,-1.80618,0	0/1:12:8,4:8:279:4:140:-8.19933,0,-21.7551	1/1:117:1,116:1:36:116:4132:-244.139,-31.7969,0	1/1:160:0,160:0:0:160:5693:-370.835,-48.1648,0	1/1:10:0,10:0:0:10:360:-20.1404,-3.0103,0	0/1:156:82,74:82:2906:74:2610:-130.987,0,-212.77	1/1:239:1,238:1:36:238:8469:-615.371,-68.3479,0	1/1:83:3,80:3:104:80:2868:-165.45,-15.2827,0	1/1:90:0,90:0:0:90:3179:-223.146,-27.0927,0	1/1:234:2,232:2:63:232:8308:-561.861,-64.5854,0	0/1:192:127,64:127:4505:64:2296:-112.444,0,-339.137	1/1:76:2,74:2:72:74:2660:-128.726,-16.3147,0	1/1:61:0,61:0:0:61:2164:-135.896,-18.3628,0	1/1:102:0,102:0:0:102:3630:-251.816,-30.7051,0	1/1:16:0,16:0:0:16:576:-34.6263,-4.81648,0	1/1:120:0,120:0:0:120:4240:-273.444,-36.1236,0	0/1:98:44,54:44:1541:54:1909:-107.612,0,-103.065	1/1:289:0,286:0:0:286:10192:-635.094,-86.0946,0	1/1:201:0,200:0:0:200:7122:-482.482,-60.206,0	1/1:230:3,227:3:108:227:8029:-492.788,-59.829,0	1/1:153:7,146:7:252:146:5194:-292.016,-24.5146,0	0/1:16:4,12:4:144:12:428:-22.5886,0,-6.89781	1/1:193:4,189:4:140:189:6718:-464.024,-45.6214,0	0/1:277:144,133:144:5098:133:4749:-243.765,0,-356.58	1/1:362:3,357:3:108:357:12730:-905.151,-98.6844,0	1/1:114:0,114:0:0:114:4079:-280.082,-34.3174,0	1/1:170:0,170:0:0:170:6057:-391.098,-51.1751,0	0/1:108:47,61:47:1639:61:2141:-116.017,0,-112.737	1/1:250:0,250:0:0:250:8850:-626.695,-75.2575,0	1/1:44:0,44:0:0:44:1576:-121.273,-13.2453,0	0/1:125:59,66:59:2074:66:2348:-114.736,0,-142.02	1/1:121:0,121:0:0:121:4316:-276.888,-36.4246,0	0/1:109:59,50:59:2044:50:1753:-54.9678,0,-137.461	0/1:155:89,66:89:3083:66:2376:-64.1979,0,-216.748	0/1:126:81,45:81:2869:45:1611:-76.196,0,-213.375	1/1:203:0,203:0:0:203:7201:-534.502,-61.1091,0	1/1:233:0,233:0:0:233:8263:-563.994,-70.14,0
chr08	5491727	.	G	A	232399	PASS	AB=0.491418;ABP=5.13469;AC=152;AF=0.808511;AN=188;AO=8367;CIGAR=1X;DP=10082;DPB=10082;DPRA=0;EPP=9.73753;EPPR=5.92925;GTI=2;LEN=1;MEANALT=1.01064;MQM=58.5109;MQMR=59.9784;NS=94;NUMALT=1;ODDS=1.97856;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=298295;QR=61090;RO=1714;RPL=18;RPP=18015.7;RPPR=3707.56;RPR=8349;RUN=1;SAF=4121;SAP=7.06543;SAR=4246;SRF=835;SRP=5.46302;SRR=879;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1364:-122.832,-11.4391,0	1/1:155:0,155:0:0:155:5537:-497.924,-46.6597,0	0/1:152:76,76:76:2708:76:2702:-197.253,0,-198.205	1/1:172:0,172:0:0:172:6134:-552.056,-51.7772,0	0/1:48:24,24:24:864:24:864:-62.6715,0,-63.6107	0/1:61:39,22:39:1396:22:792:-53.1078,0,-107.576	1/1:106:0,106:0:0:106:3776:-339.92,-31.9092,0	1/1:159:0,159:0:0:159:5701:-512.94,-47.8638,0	1/1:106:0,106:0:0:106:3768:-338.895,-31.9092,0	1/1:115:0,115:0:0:115:4105:-369.611,-34.6185,0	1/1:97:0,97:0:0:97:3468:-312.289,-29.1999,0	1/1:175:0,175:0:0:175:6260:-562.683,-52.6803,0	1/1:164:0,164:0:0:164:5837:-524.729,-49.3689,0	1/1:106:0,106:0:0:106:3775:-339.882,-31.9092,0	1/1:170:0,170:0:0:170:6074:-546.555,-51.1751,0	1/1:129:0,129:0:0:129:4580:-412.18,-38.8329,0	1/1:93:0,93:0:0:93:3325:-299.413,-27.9958,0	1/1:117:1,116:1:32:116:4151:-370.434,-32.0212,0	1/1:63:1,62:1:36:62:2203:-194.812,-15.3666,0	1/1:255:0,255:0:0:255:9105:-819.193,-76.7627,0	1/1:154:3,151:3:108:151:5394:-475.345,-36.2835,0	0/1:52:40,12:40:1420:12:428:-23.2052,0,-112.443	1/1:81:0,81:0:0:81:2855:-256.609,-24.3834,0	0/1:106:42,64:42:1512:64:2283:-173.716,0,-104.465	1/1:69:1,68:1:21:68:2390:-213.033,-18.6711,0	0/1:218:102,116:102:3595:116:4168:-309.559,0,-258.131	0/1:177:75,102:75:2670:102:3627:-273.249,0,-187.262	1/1:86:0,86:0:0:86:3058:-274.29,-25.8886,0	1/1:210:0,210:0:0:210:7437:-669.164,-63.2163,0	1/1:75:6,69:6:216:69:2468:-202.505,-2.78674,0	0/1:92:48,44:48:1724:44:1580:-114.254,0,-127.751	0/1:7:4,3:4:135:3:108:-7.96317,0,-10.3753	1/1:15:0,15:0:0:15:531:-48.0307,-4.51545,0	0/1:2:1,1:1:36:1:21:-1.49789,0,-2.99621	1/1:4:0,4:0:0:4:140:-12.9377,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.776,-1.80618,0	1/1:346:1,345:1:36:345:12265:-1099.35,-100.558,0	0/1:66:35,31:35:1247:31:1107:-80.0049,0,-92.6661	0/1:100:45,55:45:1607:55:1944:-145.063,0,-114.816	1/1:1:0,1:0:0:1:36:-3.59656,-0.30103,0	0/1:186:91,95:91:3236:95:3372:-247.472,0,-235.469	0/1:66:31,35:31:1104:35:1252:-93.0183,0,-79.8027	0/1:80:45,35:45:1589:35:1256:-89.2285,0,-119.216	0/1:136:70,66:70:2512:66:2355:-171.259,0,-185.363	1/1:118:2,116:2:72:116:4150:-366.811,-28.6848,0	0/1:75:51,24:51:1817:24:864:-55.4769,0,-141.232	0/1:101:52,49:52:1872:49:1760:-128.182,0,-138.355	0/1:145:79,66:79:2822:66:2372:-170.047,0,-210.569	1/1:81:0,81:0:0:81:2866:-258.158,-24.3834,0	1/1:123:1,122:1:36:122:4388:-391.244,-33.4284,0	1/1:123:0,123:0:0:123:4393:-395.494,-37.0267,0	0/1:9:4,5:4:144:5:176:-13.4735,0,-10.6043	0/1:181:79,102:79:2793:102:3668:-275.211,0,-197.123	0/1:35:22,13:22:788:13:456:-30.8086,0,-60.7087	0/1:9:5,4:5:180:4:144:-10.5975,0,-13.8428	0/1:86:36,50:36:1270:50:1787:-135.185,0,-88.7127	0/1:53:30,23:30:1071:23:807:-56.9845,0,-80.747	1/1:8:0,8:0:0:8:288:-26.2665,-2.40824,0	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	1/1:90:0,90:0:0:90:3236:-291.178,-27.0927,0	1/1:152:2,150:2:72:150:5345:-474.232,-38.9198,0	1/1:4:0,4:0:0:4:135:-12.4816,-1.20412,0	0/1:81:38,43:38:1351:43:1540:-114.51,0,-97.5062	1/1:139:0,139:0:0:139:4934:-443.685,-41.8432,0	1/1:80:0,80:0:0:80:2819:-253.89,-24.0824,0	1/1:68:0,68:0:0:68:2412:-217.29,-20.47,0	1/1:140:1,139:1:36:139:4951:-442.073,-38.5459,0	0/1:131:94,37:94:3352:37:1315:-78.9382,0,-262.46	1/1:72:0,72:0:0:72:2545:-229.24,-21.6742,0	1/1:112:0,112:0:0:112:4002:-359.661,-33.7154,0	1/1:119:0,119:0:0:119:4234:-381.233,-35.8226,0	1/1:14:0,14:0:0:14:504:-45.6929,-4.21442,0	1/1:47:0,47:0:0:47:1671:-150.464,-14.1484,0	0/1:80:43,37:43:1539:37:1306:-93.6812,0,-114.72	1/1:184:0,184:0:0:184:6531:-585.822,-55.3895,0	1/1:192:0,192:0:0:192:6813:-612.92,-57.7978,0	1/1:54:0,54:0:0:54:1927:-173.612,-16.2556,0	1/1:130:1,129:1:36:129:4628:-412.846,-35.5356,0	0/1:12:5,7:5:180:7:252:-19.4098,0,-12.9397	1/1:165:2,163:2:72:163:5819:-516.478,-42.8332,0	0/1:126:52,74:52:1868:74:2632:-199.093,0,-130.469	1/1:240:0,240:0:0:240:8591:-773.046,-72.2472,0	1/1:150:0,150:0:0:150:5340:-480.579,-45.1545,0	1/1:124:1,123:1:36:123:4387:-391.291,-33.7294,0	0/1:175:102,73:102:3648:73:2608:-182.191,0,-275.844	1/1:281:1,279:1:36:279:9947:-891.253,-80.975,0	1/1:64:0,64:0:0:64:2296:-206.843,-19.2659,0	0/1:141:60,81:60:2148:81:2899:-218.612,0,-151.142	1/1:123:0,123:0:0:123:4386:-394.644,-37.0267,0	0/1:78:31,47:31:1098:47:1678:-127.594,0,-75.6483	0/1:99:50,49:50:1784:49:1735:-126.568,0,-131.041	0/1:142:86,56:86:3066:56:1997:-137.244,0,-233.422	1/1:82:0,82:0:0:82:2924:-263.304,-24.6845,0	1/1:215:1,214:1:27:214:7629:-683.696,-62.0217,0
chr08	5491780	.	A	G	93620.7	PASS	AB=0.489784;ABP=4.56316;AC=151;AF=0.811828;AN=186;AO=4288;CIGAR=1X;DP=5174;DPB=5174;DPRA=0;EPP=9314.28;EPPR=1922.59;GTI=1;LEN=1;MEANALT=1.02151;MQM=57.1961;MQMR=59.9706;NS=93;NUMALT=1;ODDS=1.51209;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153662;QR=31686;RO=884;RPL=4288;RPP=9314.28;RPPR=1922.59;RPR=0;RUN=1;SAF=0;SAP=9314.28;SAR=4288;SRF=0;SRP=1922.59;SRR=884;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1224:-110.226,-10.235,0	1/1:76:0,76:0:0:76:2712:-243.4,-22.8783,0	0/1:66:31,35:31:1116:35:1252:-92.7095,0,-80.8837	1/1:106:0,106:0:0:106:3800:-342.092,-31.9092,0	0/1:28:14,14:14:504:14:500:-36.8865,0,-37.2467	0/1:25:16,9:16:576:9:320:-21.4845,0,-44.6492	1/1:77:0,77:0:0:77:2768:-249.24,-23.1793,0	1/1:50:0,50:0:0:50:1796:-161.742,-15.0515,0	1/1:54:0,54:0:0:54:1936:-174.08,-16.2556,0	1/1:51:0,51:0:0:51:1828:-164.778,-15.3525,0	1/1:62:0,62:0:0:62:2228:-200.754,-18.6639,0	1/1:106:0,106:0:0:106:3804:-341.755,-31.9092,0	1/1:87:0,87:0:0:87:3108:-279.35,-26.1896,0	1/1:47:0,47:0:0:47:1688:-152.136,-14.1484,0	1/1:97:1,96:1:36:96:3448:-306.753,-25.6016,0	1/1:80:0,80:0:0:80:2868:-258.16,-24.0824,0	1/1:17:0,17:0:0:17:612:-55.3563,-5.11751,0	1/1:39:0,39:0:0:39:1404:-126.491,-11.7402,0	1/1:30:1,29:1:36:29:1044:-90.4574,-5.43263,0	1/1:163:0,163:0:0:163:5844:-525.888,-49.0679,0	1/1:69:0,69:0:0:69:2476:-222.921,-20.7711,0	0/1:28:23,5:23:824:5:180:-8.12322,0,-66.0545	1/1:48:0,48:0:0:48:1720:-155.065,-14.4494,0	0/1:34:14,20:14:504:20:720:-54.7944,0,-35.4615	1/1:40:0,40:0:0:40:1428:-128.609,-12.0412,0	0/1:117:57,60:57:2032:60:2152:-158.68,0,-147.932	0/1:124:62,62:62:2228:62:2228:-163.253,0,-163.455	1/1:44:0,44:0:0:44:1580:-141.101,-13.2453,0	1/1:130:0,130:0:0:130:4645:-418.01,-39.1339,0	1/1:50:4,46:4:144:46:1652:-135.58,-1.73788,0	0/1:44:23,21:23:828:21:752:-54.217,0,-61.5988	0/1:4:2,2:2:72:2:72:-5.62935,0,-5.6326	1/1:13:0,13:0:0:13:464:-42.0076,-3.91339,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.295,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.4302,-1.50515,0	1/1:153:1,152:1:36:152:5440:-485.745,-42.4593,0	0/1:39:24,15:24:864:15:536:-36.7644,0,-66.3424	0/1:41:19,22:19:676:22:784:-58.4719,0,-48.8258	1/1:2:0,2:0:0:2:68:-6.31855,-0.60206,0	0/1:127:60,67:60:2152:67:2404:-178.007,0,-155.716	0/1:42:21,21:21:756:21:756:-55.6231,0,-55.724	0/1:47:29,18:29:1029:18:644:-44.1086,0,-78.7727	0/1:54:27,27:27:968:27:972:-71.5236,0,-71.1817	1/1:59:0,59:0:0:59:2120:-191.045,-17.7608,0	0/1:34:25,9:25:888:9:324:-19.2422,0,-70.004	0/1:55:27,28:27:972:28:1004:-74.013,0,-71.2413	0/1:73:42,31:42:1508:31:1116:-78.7432,0,-114.039	1/1:38:0,38:0:0:38:1356:-122.306,-11.4391,0	1/1:51:0,51:0:0:51:1828:-164.78,-15.3525,0	1/1:61:0,61:0:0:61:2192:-197.399,-18.3628,0	0/1:10:4,5:4:144:5:172:-12.8744,0,-10.3644	0/1:126:45,81:45:1616:81:2885:-221.348,0,-107.797	0/1:23:11,12:11:396:12:428:-31.9065,0,-29.0591	0/1:4:2,2:2:72:2:68:-5.24866,0,-5.6326	0/1:50:25,25:25:896:25:892:-65.5122,0,-65.9089	0/1:30:13,17:13:464:17:608:-46.0056,0,-33.0666	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:59:0,59:0:0:59:2124:-191.145,-17.7608,0	1/1:71:0,71:0:0:71:2556:-230.17,-21.3731,0	1/1:4:0,4:0:0:4:144:-13.3124,-1.20412,0	0/1:31:12,19:12:432:19:676:-51.8361,0,-29.8893	1/1:64:0,64:0:0:64:2296:-206.744,-19.2659,0	1/1:40:0,40:0:0:40:1432:-129.095,-12.0412,0	1/1:44:0,44:0:0:44:1572:-141.74,-13.2453,0	1/1:68:0,68:0:0:68:2440:-219.785,-20.47,0	0/1:85:62,23:62:2205:23:824:-48.6876,0,-173.126	1/1:43:0,43:0:0:43:1544:-139.186,-12.9443,0	1/1:67:0,67:0:0:67:2400:-215.8,-20.169,0	1/1:39:0,39:0:0:39:1400:-126.298,-11.7402,0	1/1:9:0,9:0:0:9:324:-29.5022,-2.70927,0	1/1:32:0,32:0:0:32:1140:-102.703,-9.63296,0	0/1:46:21,24:21:752:24:860:-63.7377,0,-54.1005	1/1:70:0,70:0:0:70:2500:-223.425,-21.0721,0	1/1:112:0,112:0:0:112:3998:-359.718,-33.7154,0	1/1:30:0,30:0:0:30:1080:-97.4175,-9.0309,0	1/1:63:1,62:1:36:62:2224:-196.567,-15.3666,0	0/1:3:1,2:1:36:2:72:-5.92659,0,-2.69518	1/1:112:2,110:2:72:110:3925:-346.06,-26.8786,0	0/1:57:23,34:23:828:34:1224:-93.1945,0,-57.6854	1/1:132:0,132:0:0:132:4728:-425.504,-39.736,0	1/1:39:0,39:0:0:39:1392:-125.517,-11.7402,0	1/1:69:1,68:1:36:68:2420:-214.343,-17.1728,0	0/1:42:24,18:24:860:18:648:-45.9556,0,-65.0786	1/1:113:0,113:0:0:113:4064:-365.783,-34.0164,0	1/1:16:0,16:0:0:16:576:-52.1164,-4.81648,0	0/1:52:25,27:25:900:27:972:-72.0539,0,-65.6675	1/1:47:0,47:0:0:47:1688:-152.038,-14.1484,0	0/1:42:17,25:17:612:25:900:-68.4324,0,-42.7702	0/1:60:33,27:33:1184:27:972:-69.6261,0,-88.8065	0/1:66:36,30:36:1288:30:1076:-77.273,0,-96.3556	1/1:48:0,48:0:0:48:1720:-154.995,-14.4494,0	1/1:120:1,119:1:36:119:4257:-379.435,-32.5253,0
chr08	5526388	.	C	T	1.62007e-11	PASS	AB=0.488025;ABP=6.59877;AC=25;AF=0.134409;AN=186;AO=1423;CIGAR=1X;DP=10085;DPB=10085;DPRA=1.23635;EPP=3093.02;EPPR=18755.9;GTI=24;LEN=1;MEANALT=1.0303;MQM=12.1012;MQMR=43.5635;NS=93;NUMALT=1;ODDS=33.5741;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50584;QR=309394;RO=8660;RPL=1423;RPP=3093.02;RPPR=18764.6;RPR=0;RUN=1;SAF=0;SAP=3093.02;SAR=1423;SRF=1;SRP=18799.3;SRR=8659;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:95:95,0:95:3366:0:0:0,-28.5978,-291.057	0/0:98:98,0:98:3484:0:0:0,-29.5009,-301.202	0/0:90:88,2:88:3137:2:68:0,-24.7232,-269.262	0/0:193:193,0:193:6888:0:0:0,-58.0988,-612.678	0/1:37:20,17:20:701:17:574:-5.712,0,-50.9888	0/0:39:39,0:39:1400:0:0:0,-11.7402,-121.214	0/0:137:137,0:137:4896:0:0:0,-41.2411,-435.744	0/0:217:217,0:217:7761:0:0:0,-65.3235,-670.282	0/0:152:152,0:152:5429:0:0:0,-45.7566,-468.777	0/0:190:190,0:190:6774:0:0:0,-57.1957,-602.821	0/0:68:68,0:68:2424:0:0:0,-20.47,-216.065	0/0:114:114,0:114:4080:0:0:0,-34.3174,-351.76	0/0:105:105,0:105:3772:0:0:0,-31.6081,-325.74	0/0:84:84,0:84:3012:0:0:0,-25.2865,-265.101	0/0:92:92,0:92:3308:0:0:0,-27.6948,-294.331	0/0:72:72,0:72:2576:0:0:0,-21.6742,-226.389	0/0:39:39,0:39:1396:0:0:0,-11.7402,-120.607	0/0:61:61,0:61:2184:0:0:0,-18.3628,-188.802	0/0:51:51,0:51:1832:0:0:0,-15.3525,-158.438	0/0:195:195,0:195:6979:0:0:0,-58.7008,-619.208	0/0:240:240,0:240:8577:0:0:0,-72.2472,-754.52	0/1:89:28,61:28:989:61:2171:-43.8183,0,-60.7979	0/0:118:118,0:118:4227:0:0:0,-35.5215,-374.785	0/1:55:24,31:24:860:31:1112:-14.385,0,-59.2902	0/0:104:104,0:104:3719:0:0:0,-31.3071,-327.42	0/1:354:223,131:223:7948:131:4632:-45.0174,0,-594.941	0/1:307:153,154:153:5462:154:5520:-59.1597,0,-387.215	0/0:33:33,0:33:1184:0:0:0,-9.93399,-104.392	0/0:254:254,0:254:9074:0:0:0,-76.4616,-803.773	0/0:217:211,6:211:7531:6:212:0,-59.2822,-655.742	0/1:137:84,53:84:3008:53:1889:-20.2472,0,-225.825	0/1:6:3,3:3:108:3:108:-1.27029,0,-8.05264	0/0:15:15,0:15:536:0:0:0,-4.51545,-47.5646	0/0:8:8,0:8:284:0:0:0,-2.40824,-24.9273	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.2611	0/0:13:13,0:13:464:0:0:0,-3.91339,-40.4133	0/0:231:231,0:231:8283:0:0:0,-69.5379,-734.791	0/1:117:57,60:57:2014:60:2137:-23.8248,0,-142.321	0/0:37:37,0:37:1312:0:0:0,-11.1381,-113.387	.:.:.:.:.:.:.:.	0/1:153:88,65:88:3156:65:2317:-18.2018,0,-231.811	0/1:31:10,21:10:351:21:752:-11.4521,0,-21.9157	0/1:241:119,122:119:4260:122:4301:-50.3249,0,-301.976	0/1:65:23,42:23:824:42:1489:-28.9371,0,-53.8301	0/0:71:70,0:70:2501:0:0:0,-21.0721,-222.324	0/1:147:77,70:77:2751:70:2497:-36.6919,0,-200.088	0/0:94:93,1:93:3329:1:36:0,-26.9989,-286.136	0/1:175:72,103:72:2579:103:3700:-68.821,0,-176.863	0/0:139:139,0:139:4931:0:0:0,-41.8432,-438.136	0/0:105:105,0:105:3708:0:0:0,-31.6081,-329.97	0/0:159:159,0:159:5692:0:0:0,-47.8638,-504.604	0/1:14:10,4:10:360:4:144:-0.403689,0,-28.1348	0/0:66:66,0:66:2360:0:0:0,-19.868,-204.155	0/1:86:52,34:52:1842:34:1197:-15.6699,0,-137.487	0/0:13:13,0:13:468:0:0:0,-3.91339,-40.7023	0/1:187:91,96:91:3204:96:3428:-38.1974,0,-226.283	0/1:38:22,16:22:777:16:568:-7.01537,0,-57.9905	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5168	0/1:19:11,8:11:396:8:273:-3.61084,0,-29.5934	0/0:113:113,0:113:4037:0:0:0,-34.0164,-355.656	0/0:102:102,0:102:3659:0:0:0,-30.7051,-324.848	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.7095	0/1:168:86,81:86:3062:81:2859:-43.313,0,-221.344	0/0:269:269,0:269:9609:0:0:0,-80.9771,-852.254	0/0:102:102,0:102:3648:0:0:0,-30.7051,-321.35	0/0:94:94,0:94:3368:0:0:0,-28.2968,-298.158	0/0:146:146,0:146:5214:0:0:0,-43.9504,-463.25	0/1:155:67,88:67:2374:88:3104:-55.278,0,-164.882	0/0:65:65,0:65:2321:0:0:0,-19.5669,-203.657	0/0:83:83,0:83:2976:0:0:0,-24.9855,-257.174	0/0:68:68,0:68:2440:0:0:0,-20.47,-216.719	0/0:19:19,0:19:676:0:0:0,-5.71957,-60.5196	0/0:140:140,0:140:5005:0:0:0,-42.1442,-432.063	0/0:82:82,0:82:2933:0:0:0,-24.6845,-253.58	0/0:252:251,1:251:8946:1:36:0,-74.7608,-786.156	0/0:111:111,0:111:3976:0:0:0,-33.4143,-353.432	0/0:191:191,0:191:6844:0:0:0,-57.4967,-589.352	0/0:138:138,0:138:4922:0:0:0,-41.5421,-425.325	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.8907	0/0:94:94,0:94:3372:0:0:0,-28.2968,-296.982	0/0:74:74,0:74:2645:0:0:0,-22.2762,-228.664	0/0:241:239,2:239:8564:2:72:0,-70.0821,-758.685	0/0:96:96,0:96:3432:0:0:0,-28.8989,-305.449	0/0:98:97,1:97:3472:1:35:0,-28.303,-307.751	0/1:70:39,31:39:1404:31:1105:-14.714,0,-104.111	0/0:153:150,3:150:5372:3:108:0,-40.9457,-469.425	0/0:31:31,0:31:1108:0:0:0,-9.33193,-95.9392	0/0:56:55,1:55:1976:1:36:0,-13.4701,-166.277	0/0:81:81,0:81:2901:0:0:0,-24.3834,-250.273	0/1:57:24,33:24:864:33:1180:-15.58,0,-59.2472	0/1:98:56,42:56:1995:42:1484:-11.6791,0,-146.226	0/1:75:35,40:35:1256:40:1440:-23.9188,0,-88.9463	0/0:131:131,0:131:4643:0:0:0,-39.4349,-412.625	0/0:143:143,0:143:5124:0:0:0,-43.0473,-454.758
chr08	5588019	.	TTGGTA	TTGGTG,CTGATG	184456	PASS	AB=0.393709,0.599949;ABP=389.845,345.061;AC=153,35;AF=0.81383,0.18617;AN=188;AO=6243,2375;CIGAR=5M1X,1X2M1X1M1X;DP=8677;DPB=8676.83;DPRA=0,1.41216;EPP=13351.9,5065.16;EPPR=0;GTI=8;LEN=1,6;MEANALT=1.97872,2.65789;MQM=59.8922,52.9869;MQMR=0;NS=94;NUMALT=2;ODDS=0.427538;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=221853,82107;QR=0;RO=0;RPL=6219,2364;RPP=13351.9,5065.16;RPPR=0;RPR=24,11;RUN=1,1;SAF=6243,2375;SAP=13559.5,5160.26;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36,0:0:0:36,0:1264,0:-114.06,-10.8371,0,-114.06,-10.8371,-114.06	1/1:60:0,59,0:0:0:59,0:2091,0:-188.1,-17.7608,0,-188.1,-17.7608,-188.1	1/2:150:0,53,95:0:0:53,95:1900,3269:-419.073,-264.103,-248.148,-155.045,0,-126.448	1/1:155:0,155,0:0:0:155,0:5487,0:-493.961,-46.6597,0,-493.961,-46.6597,-493.961	1/2:132:0,54,77:0:0:54,77:1932,2655:-372.805,-215.256,-199.001,-157.563,0,-134.383	1/2:63:0,25,38:0:0:25,38:891,1325:-179.534,-106.903,-99.3773,-72.983,0,-61.5439	1/1:92:0,92,0:0:0:92,0:3292,0:-296.499,-27.6948,0,-296.499,-27.6948,-296.499	1/1:169:0,168,0:0:0:168,0:5932,0:-533.63,-50.573,0,-533.63,-50.573,-533.63	1/1:93:0,93,0:0:0:93,0:3313,0:-298.387,-27.9958,0,-298.387,-27.9958,-298.387	1/1:116:0,115,0:0:0:115,0:4096,0:-368.574,-34.6185,0,-368.574,-34.6185,-368.574	1/1:58:0,57,0:0:0:57,0:2022,0:-181.931,-17.1587,0,-181.931,-17.1587,-181.931	1/1:75:0,75,0:0:0:75,0:2656,0:-239.248,-22.5773,0,-239.248,-22.5773,-239.248	1/1:54:0,53,0:0:0:53,0:1891,0:-170.096,-15.9546,0,-170.096,-15.9546,-170.096	1/1:62:0,62,0:0:0:62,0:2180,0:-196.464,-18.6639,0,-196.464,-18.6639,-196.464	1/1:59:0,59,0:0:0:59,0:2091,0:-188.452,-17.7608,0,-188.452,-17.7608,-188.452	1/1:45:0,45,0:0:0:45,0:1572,0:-141.763,-13.5464,0,-141.763,-13.5464,-141.763	1/1:77:0,74,0:0:0:74,0:2610,0:-233.631,-22.2762,0,-233.631,-22.2762,-233.631	1/1:63:0,62,1:0:0:62,1:2154,31:-193.791,-18.6639,0,-191.374,-15.9438,-191.073	1/1:34:0,34,0:0:0:34,0:1216,0:-109.747,-10.235,0,-109.747,-10.235,-109.747	1/1:83:0,83,0:0:0:83,0:2967,0:-267.234,-24.9855,0,-267.234,-24.9855,-267.234	1/1:130:0,129,0:0:0:129,0:4600,0:-413.917,-38.8329,0,-413.917,-38.8329,-413.917	1/2:167:0,28,138:0:0:28,138:1004,4826:-473.557,-391.667,-383.238,-81.9307,0,-40.3885	1/1:58:0,58,0:0:0:58,0:2062,0:-185.85,-17.4597,0,-185.85,-17.4597,-185.85	1/2:180:0,98,82:0:0:98,82:3497,2859:-515.766,-230.922,-201.421,-285.195,0,-260.51	1/1:67:0,63,0:0:0:63,0:2244,0:-201.932,-18.9649,0,-201.932,-18.9649,-201.932	1/2:328:0,113,211:0:0:113,211:4019,7334:-921.843,-594.322,-560.305,-327.624,0,-264.107	1/2:269:0,111,155:0:0:111,155:3955,5411:-761.244,-438.951,-405.537,-322.389,0,-275.73	1/1:39:0,39,0:0:0:39,0:1392,0:-125.579,-11.7402,0,-125.579,-11.7402,-125.579	1/1:234:0,234,0:0:0:234,0:8383,0:-754.4,-70.441,0,-754.4,-70.441,-754.4	1/1:93:0,84,8:0:0:84,8:3024,259:-272.06,-25.2865,0,-251.258,-4.51541,-248.85	1/2:72:0,28,44:0:0:28,44:1000,1492:-202.391,-120.854,-112.426,-81.8865,0,-68.6412	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:5:0,2,3:0:0:2,3:68,108:-14.6545,-9.14675,-8.54469,-5.85527,0,-4.95218	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:182:0,182,0:0:0:182,0:6464,0:-581.84,-54.7875,0,-581.84,-54.7875,-581.84	1/2:184:0,71,110:0:0:71,110:2519,3803:-513.128,-307.907,-286.534,-205.26,0,-172.147	1/2:52:0,24,28:0:0:24,28:842,951:-145.817,-77.2899,-70.0652,-68.8723,0,-60.4435	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:200:0,46,153:0:0:46,153:1626,5289:-560.457,-428.03,-414.182,-132.565,0,-86.5076	1/2:28:0,13,15:0:0:13,15:464,522:-80.2538,-42.4211,-38.5077,-38.1841,0,-33.6687	1/2:138:0,53,84:0:0:53,84:1891,2879:-386.615,-232.452,-216.498,-154.153,0,-128.867	1/2:85:0,36,49:0:0:36,49:1276,1708:-243.074,-139.12,-128.283,-104.306,0,-89.5555	1/1:64:0,64,0:0:0:64,0:2257,0:-203.389,-19.2659,0,-203.389,-19.2659,-203.389	1/2:75:0,43,32:0:0:43,32:1536,1103:-214.916,-89.6769,-76.7327,-125.589,0,-115.956	1/2:151:0,58,92:0:0:58,92:2061,3149:-422.711,-254.761,-237.302,-167.94,0,-140.245	1/2:203:0,74,128:0:0:74,128:2626,4444:-574.168,-360.295,-338.018,-213.993,0,-175.461	1/1:86:0,84,0:0:0:84,0:3008,0:-270.582,-25.2865,0,-270.582,-25.2865,-270.582	1/1:167:0,165,0:0:0:165,0:5882,0:-528.275,-49.67,0,-528.275,-49.67,-528.275	1/1:111:0,110,0:0:0:110,0:3921,0:-352.721,-33.1133,0,-352.721,-33.1133,-352.721	1/2:5:0,2,3:0:0:2,3:72,108:-15.0398,-9.16481,-8.56275,-6.23466,0,-5.33157	1/2:158:0,69,89:0:0:69,89:2476,3105:-453.902,-251.951,-231.18,-202.305,0,-175.513	1/2:20:0,7,13:0:0:7,13:248,430:-55.2313,-35.0199,-32.9127,-20.557,0,-16.6436	1/2:11:0,3,8:0:0:3,8:93,269:-29.5279,-22.071,-21.1679,-7.77364,0,-5.3654	1/2:155:0,59,96:0:0:59,96:2108,3335:-442.446,-270.571,-252.81,-172.228,0,-143.33	1/2:43:0,15,28:0:0:15,28:527,929:-118.094,-75.1929,-70.6774,-43.2447,0,-34.8159	1/1:1:0,1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chr08	5588344	.	C	T	184268	PASS	AB=0.494194;ABP=4.27102;AC=152;AF=0.808511;AN=188;AO=8583;CIGAR=1X;DP=10786;DPB=10786;DPRA=0;EPP=18458.8;EPPR=4726.1;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.6038;MQMR=59.9436;NS=94;NUMALT=1;ODDS=2.41878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=304936;QR=76483;RO=2199;RPL=8563;RPP=18467.4;RPPR=4734.75;RPR=20;RUN=1;SAF=8582;SAP=18632.1;SAR=1;SRF=2198;SRP=4769.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1938:-174.667,-16.5567,0	1/1:195:1,193:1:36:193:6878:-615.461,-55.1411,0	0/1:315:143,172:143:4912:172:6130:-456.922,0,-347.398	1/1:286:0,286:0:0:286:10204:-917.564,-86.0946,0	0/1:82:38,44:38:1331:44:1580:-117.798,0,-95.4018	0/1:70:24,46:24:860:46:1631:-125.986,0,-56.6497	1/1:150:0,150:0:0:150:5344:-481.077,-45.1545,0	1/1:167:0,167:0:0:167:5924:-533.24,-50.272,0	1/1:114:0,114:0:0:114:4058:-365.295,-34.3174,0	1/1:141:1,139:1:36:139:4965:-443.34,-38.9058,0	1/1:57:0,57:0:0:57:2031:-183.022,-17.1587,0	1/1:89:0,89:0:0:89:3164:-284.947,-26.7917,0	1/1:68:0,68:0:0:68:2424:-218.316,-20.47,0	1/1:48:0,48:0:0:48:1720:-155.071,-14.4494,0	1/1:70:0,70:0:0:70:2507:-225.865,-21.0721,0	1/1:55:0,55:0:0:55:1944:-175.211,-16.5567,0	1/1:60:0,59:0:0:59:2104:-189.409,-17.7608,0	1/1:59:0,59:0:0:59:2098:-189.072,-17.7608,0	1/1:62:0,62:0:0:62:2200:-197.819,-18.6639,0	1/1:238:1,237:1:36:237:8413:-753.484,-68.0469,0	1/1:214:0,214:0:0:214:7604:-683.736,-64.4204,0	0/1:138:82,56:82:2832:56:1985:-137.357,0,-213.576	1/1:109:0,109:0:0:109:3892:-350.451,-32.8123,0	0/1:152:64,88:64:2221:88:3132:-236.337,0,-154.392	1/1:59:0,59:0:0:59:2104:-188.982,-17.7608,0	0/1:309:134,175:134:4683:175:6243:-468.929,0,-328.614	0/1:223:97,126:97:3401:126:4481:-336.295,0,-239.174	1/1:46:0,46:0:0:46:1636:-147.524,-13.8474,0	1/1:268:1,267:1:36:267:9484:-849.366,-77.0778,0	1/1:153:1,152:1:36:152:5402:-482.658,-42.4593,0	0/1:186:77,109:77:2689:109:3866:-291.858,0,-186.262	0/1:26:15,11:15:540:11:392:-27.7933,0,-41.1098	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:15:11,4:11:344:4:144:-8.79817,0,-26.7467	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	1/1:16:0,16:0:0:16:552:-49.9947,-4.81648,0	1/1:207:0,207:0:0:207:7381:-664.273,-62.3132,0	0/1:260:144,116:144:5036:116:4137:-294.176,0,-375.103	0/1:68:40,28:40:1366:28:977:-67.7672,0,-102.76	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:165:89,76:89:3106:76:2667:-190.561,0,-229.321	0/1:37:17,20:17:583:20:707:-52.8165,0,-41.6543	0/1:183:97,86:97:3383:86:3079:-222.235,0,-249.594	0/1:70:34,36:34:1171:36:1279:-94.3316,0,-84.6183	1/1:55:1,54:1:27:54:1918:-170.184,-13.8569,0	0/1:132:68,64:68:2336:64:2282:-165.674,0,-170.757	0/1:148:71,77:71:2491:77:2743:-202.362,0,-179.89	0/1:196:109,87:109:3780:87:3093:-219.589,0,-281.398	1/1:116:0,116:0:0:116:4098:-368.982,-34.9195,0	1/1:200:1,199:1:36:199:7064:-632.025,-56.6077,0	1/1:178:2,176:2:68:176:6243:-555.468,-47.1256,0	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/1:216:94,122:94:3294:122:4345:-326.104,0,-231.656	0/1:52:24,28:24:824:28:1000:-74.6618,0,-58.819	0/1:25:15,10:15:522:10:360:-25.2103,0,-39.7815	0/1:184:112,72:112:3897:72:2572:-176.339,0,-295.531	0/1:53:36,17:36:1261:17:584:-36.9237,0,-97.8358	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	1/1:88:0,88:0:0:88:3114:-280.422,-26.4906,0	1/1:133:0,133:0:0:133:4668:-420.227,-40.037,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:228:105,123:105:3656:123:4399:-327.444,0,-260.608	1/1:252:1,251:1:27:251:8879:-795.974,-73.1598,0	1/1:75:0,75:0:0:75:2665:-240.085,-22.5773,0	1/1:154:0,154:0:0:154:5458:-491.336,-46.3586,0	1/1:212:4,208:4:144:208:7391:-651.899,-50.5047,0	0/1:141:107,34:107:3780:34:1211:-66.7085,0,-297.939	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:80:0,80:0:0:80:2828:-254.618,-24.0824,0	1/1:61:0,61:0:0:61:2138:-192.686,-18.3628,0	1/1:12:0,12:0:0:12:432:-39.2188,-3.61236,0	1/1:95:0,95:0:0:95:3391:-305.274,-28.5979,0	0/1:72:24,48:24:842:48:1699:-131.51,0,-54.4229	1/1:170:0,169:0:0:169:5971:-536.926,-50.8741,0	1/1:193:1,192:1:27:192:6793:-608.724,-55.399,0	1/1:120:0,120:0:0:120:4260:-383.502,-36.1236,0	1/1:103:1,102:1:36:102:3641:-323.907,-27.4078,0	0/1:24:17,7:17:593:7:252:-15.796,0,-46.47	1/1:194:3,191:3:104:191:6779:-600.391,-48.697,0	0/1:156:84,72:84:2948:72:2564:-183.98,0,-218.594	1/1:321:0,321:0:0:321:11369:-1023,-96.6306,0	1/1:105:0,105:0:0:105:3729:-335.808,-31.6082,0	1/1:55:2,53:2:59:53:1874:-163.298,-10.9525,0	0/1:79:34,45:34:1122:45:1612:-121.584,0,-77.4923	1/1:131:0,131:0:0:131:4660:-419.506,-39.4349,0	1/1:35:0,35:0:0:35:1237:-111.63,-10.5361,0	0/1:69:31,38:31:1074:38:1340:-100.126,0,-76.1954	1/1:69:0,69:0:0:69:2455:-221.18,-20.7711,0	0/1:42:27,15:27:943:15:536:-35.9316,0,-72.5348	0/1:93:49,44:49:1667:44:1580:-114.387,0,-122.315	0/1:69:49,20:49:1715:20:712:-43.6356,0,-133.863	1/1:140:0,140:0:0:140:4936:-443.56,-42.1442,0	1/1:83:0,83:0:0:83:2941:-264.91,-24.9855,0
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chr08	5594335	.	C	T	22232.2	PASS	AB=0.508501;ABP=4.63471;AC=37;AF=0.196809;AN=188;AO=1333;CIGAR=1X;DP=7390;DPB=7390;DPRA=1.08092;EPP=2897.58;EPPR=13138.2;GTI=2;LEN=1;MEANALT=1.025;MQM=60;MQMR=59.9988;NS=94;NUMALT=1;ODDS=4.55487;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47519;QR=214499;RO=6053;RPL=0;RPP=2897.58;RPPR=13129.6;RPR=1333;RUN=1;SAF=0;SAP=2897.58;SAR=1333;SRF=1;SRP=13138.2;SRR=6052;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:140:140,0:140:4933:0:0:0,-42.1442,-444.125	0/1:70:32,38:32:1144:38:1360:-101.628,0,-82.1974	0/0:122:122,0:122:4339:0:0:0,-36.7257,-390.688	0/1:60:30,30:30:1076:30:1071:-78.6398,0,-79.0911	0/1:26:14,12:14:476:12:424:-30.6696,0,-35.3351	0/0:103:103,0:103:3687:0:0:0,-31.0061,-332.032	0/0:340:339,0:339:12041:0:0:0,-102.049,-1083.19	0/0:70:70,0:70:2469:0:0:0,-21.0721,-222.464	0/0:126:126,0:126:4445:0:0:0,-37.9298,-400.223	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:47:47,0:47:1635:0:0:0,-14.1484,-147.435	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/0:57:57,0:57:2002:0:0:0,-17.1587,-180.453	0/0:50:50,0:50:1758:0:0:0,-15.0515,-158.5	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/0:47:47,0:47:1659:0:0:0,-14.1484,-149.597	0/0:50:50,0:50:1743:0:0:0,-15.0515,-157.15	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:130:130,0:130:4620:0:0:0,-39.1339,-415.962	0/0:169:169,0:169:6035:0:0:0,-50.8741,-543.255	0/1:94:24,70:24:847:70:2488:-195.877,0,-48.2519	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:119:73,46:73:2603:46:1648:-112.786,0,-198.696	0/0:73:73,0:73:2584:0:0:0,-21.9752,-232.808	0/1:322:171,151:171:6058:151:5392:-388.481,0,-448.393	0/1:177:70,107:70:2491:107:3795:-288.466,0,-171.161	0/0:24:24,0:24:843:0:0:0,-7.22472,-76.188	0/0:200:200,0:200:7045:0:0:0,-60.206,-634.12	0/0:132:130,2:130:4622:2:72:0,-32.8992,-409.306	0/1:85:49,36:49:1743:36:1292:-90.9962,0,-131.566	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:170:170,0:170:5976:0:0:0,-51.1751,-537.953	0/1:177:95,82:95:3360:82:2914:-209.213,0,-249.335	0/1:43:14,29:14:495:29:1044:-81.3305,0,-31.9387	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:75:38,37:38:1351:37:1317:-96.2526,0,-99.3123	0/1:20:5,15:5:165:15:524:-41.4668,0,-9.153	0/1:96:51,45:51:1806:45:1611:-116.38,0,-133.921	0/1:38:19,19:19:657:19:666:-48.8251,0,-48.0113	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/1:54:20,34:20:716:34:1216:-93.4909,0,-48.5121	0/1:73:41,32:41:1433:32:1148:-81.6546,0,-107.288	0/1:135:85,50:85:3020:50:1762:-118.221,0,-231.391	0/0:113:112,1:112:3997:1:36:0,-30.4181,-356.321	0/0:112:111,0:111:3946:0:0:0,-33.4143,-354.973	0/0:177:177,0:177:6285:0:0:0,-53.2823,-565.745	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:92:48,44:48:1693:44:1568:-113.717,0,-124.959	0/1:28:15,13:15:527:13:468:-34.0308,0,-39.3313	0/1:19:9,10:9:324:10:345:-25.6613,0,-23.7863	0/1:79:38,41:38:1351:41:1468:-108.635,0,-98.1082	0/1:36:15,21:15:525:21:748:-56.8082,0,-36.741	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:7,4:7:244:4:140:-9.63325,0,-18.9881	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:71:71,0:71:2520:0:0:0,-21.3731,-227.053	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:218:109,108:109:3879:108:3872:-282.991,0,-283.623	0/0:215:212,3:212:7551:3:108:0,-54.6463,-669.557	0/0:103:103,0:103:3669:0:0:0,-31.0061,-330.413	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.385	0/0:201:199,2:199:7052:2:72:0,-53.6703,-627.903	0/1:74:31,43:31:1097:43:1544:-116.977,0,-76.7618	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:83:83,0:83:2918:0:0:0,-24.9855,-262.855	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:67:67,0:67:2394:0:0:0,-20.169,-215.716	0/1:73:39,34:39:1387:34:1212:-87.4111,0,-103.153	0/0:144:144,0:144:5130:0:0:0,-43.3483,-461.844	0/0:115:115,0:115:4042:0:0:0,-34.6184,-363.969	0/0:76:76,0:76:2696:0:0:0,-22.8783,-242.883	0/0:84:84,0:84:2990:0:0:0,-25.2865,-269.332	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:86:86,0:86:3050:0:0:0,-25.8886,-274.73	0/1:74:34,40:34:1216:40:1436:-107.261,0,-87.4703	0/0:212:211,0:211:7413:0:0:0,-63.5173,-667.01	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/0:29:28,1:28:1004:1:36:0,-5.13159,-87.0776	0/1:56:26,30:26:911:30:1067:-79.4835,0,-65.4473	0/0:102:102,0:102:3628:0:0:0,-30.7051,-326.727	0/0:40:40,0:40:1395:0:0:0,-12.0412,-125.844	0/1:46:21,25:21:748:25:876:-65.3078,0,-53.7979	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/1:17:9,8:9:316:8:288:-21.1499,0,-23.6613	0/1:40:23,17:23:807:17:608:-43.0108,0,-60.908	0/1:53:13,40:13:455:40:1419:-112.052,0,-25.3274	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.306	0/0:61:61,0:61:2114:0:0:0,-18.3628,-190.526
chr08	5616455	.	A	G	26887.8	PASS	AB=0.523092;ABP=16.8502;AC=34;AF=0.184783;AN=184;AO=1573;CIGAR=1X;DP=8131;DPB=8131;DPRA=1.12415;EPP=3366.82;EPPR=13786.8;GTI=0;LEN=1;MEANALT=1.02381;MQM=59.958;MQMR=59.9954;NS=92;NUMALT=1;ODDS=1.91008;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56064;QR=231777;RO=6554;RPL=6;RPP=3366.82;RPPR=13778.2;RPR=1567;RUN=1;SAF=1573;SAP=3418.74;SAR=0;SRF=6553;SRP=14226.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:34,1:34:1216:1:36:0,-6.93777,-106.148	0/0:92:92,0:92:3262:0:0:0,-27.6948,-293.799	0/1:98:32,66:32:1148:66:2356:-182.798,0,-74.1289	0/0:151:151,0:151:5374:0:0:0,-45.4555,-483.792	0/1:48:15,33:15:517:33:1184:-92.4189,0,-32.4052	0/1:27:9,18:9:309:18:620:-47.9218,0,-20.0129	0/0:110:110,0:110:3850:0:0:0,-33.1133,-346.693	0/0:131:131,0:131:4669:0:0:0,-39.4349,-420.372	0/0:78:78,0:78:2751:0:0:0,-23.4803,-247.829	0/0:83:82,0:82:2902:0:0:0,-24.6845,-261.079	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:67:67,0:67:2365:0:0:0,-20.169,-213.108	0/0:67:67,0:67:2369:0:0:0,-20.169,-213.467	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:70:69,1:69:2445:1:36:0,-17.4738,-216.706	0/0:96:95,1:95:3327:1:30:0,-25.8993,-296.646	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.435	0/0:150:150,0:150:5315:0:0:0,-45.1545,-478.485	0/0:127:127,0:127:4435:0:0:0,-38.2308,-399.32	0/1:104:29,75:29:1014:75:2650:-207.437,0,-60.2604	0/0:44:44,0:44:1504:0:0:0,-13.2453,-135.644	0/1:87:44,43:44:1561:43:1540:-112.703,0,-114.59	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.135	0/1:242:129,113:129:4539:113:4004:-287.701,0,-335.831	0/1:173:93,80:93:3306:80:2854:-204.973,0,-245.679	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/0:197:197,0:197:6906:0:0:0,-59.3029,-621.608	0/0:115:114,1:114:4026:1:36:0,-31.0202,-358.932	0/1:87:38,49:38:1353:49:1723:-129.156,0,-95.8788	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:257:256,0:256:9168:0:0:0,-77.0637,-824.811	0/1:181:84,97:84:2989:97:3456:-256.765,0,-214.755	0/1:62:42,20:42:1500:20:716:-46.1039,0,-116.631	.:.:.:.:.:.:.:.	0/1:119:61,58:61:2146:58:2072:-150.928,0,-157.582	0/1:29:19,10:19:680:10:341:-22.2879,0,-52.7993	0/1:85:38,47:38:1364:47:1682:-126.08,0,-97.4732	0/1:88:35,53:35:1233:53:1904:-145.147,0,-84.7815	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.744	0/1:59:20,39:20:701:39:1388:-107.458,0,-45.651	0/1:122:59,63:59:2085:63:2245:-165.586,0,-151.193	0/1:171:83,88:83:2897:88:3156:-232.788,0,-209.485	0/0:98:97,1:97:3382:1:36:0,-25.9027,-300.993	0/0:212:210,2:210:7407:2:72:0,-56.9816,-659.842	0/0:129:129,0:129:4485:0:0:0,-38.8329,-403.816	.:.:.:.:.:.:.:.	0/1:126:59,67:59:2048:67:2373:-175.895,0,-146.655	0/1:36:14,22:14:496:22:788:-60.4077,0,-34.1372	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:106:54,52:54:1895:52:1862:-135.95,0,-138.913	0/1:40:12,28:12:413:28:1004:-78.6347,0,-25.4566	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/0:72:72,0:72:2557:0:0:0,-21.6742,-230.379	0/0:90:90,0:90:3183:0:0:0,-27.0927,-286.691	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/1:194:95,98:95:3377:98:3487:-255.583,0,-245.687	0/0:156:154,2:154:5437:2:72:0,-40.124,-482.622	0/0:65:65,0:65:2287:0:0:0,-19.5669,-206.087	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.952	0/0:110:110,0:110:3870:0:0:0,-33.1133,-348.495	0/1:103:33,70:33:1176:70:2516:-195.685,0,-75.1417	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:49:49,0:49:1726:0:0:0,-14.7505,-155.621	0/0:95:95,0:95:3332:0:0:0,-28.5978,-300.096	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:103:102,0:102:3621:0:0:0,-30.7051,-325.796	0/1:69:34,35:34:1140:35:1247:-91.763,0,-82.1229	0/0:98:98,0:98:3477:0:0:0,-29.5009,-313.142	0/0:162:162,0:162:5739:0:0:0,-48.7669,-516.628	0/0:63:63,0:63:2218:0:0:0,-18.9649,-199.882	0/0:118:118,0:118:4103:0:0:0,-35.5215,-369.454	0/1:13:7,6:7:244:6:216:-15.8771,0,-18.386	0/0:199:199,0:199:7063:0:0:0,-59.905,-635.733	0/1:113:60,53:60:2069:53:1881:-135.55,0,-152.456	0/0:155:155,0:155:5495:0:0:0,-46.6596,-494.678	0/0:117:117,0:117:4154:0:0:0,-35.2205,-374.043	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.647	0/1:111:61,50:61:2188:50:1800:-128.868,0,-163.771	0/0:179:178,1:178:6324:1:36:0,-50.2861,-565.644	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.646	0/1:79:44,35:44:1576:35:1256:-89.5635,0,-118.35	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:37:24,13:24:856:13:457:-30.3253,0,-66.223	0/1:80:51,29:51:1828:29:1032:-69.1111,0,-140.719	0/1:73:30,43:30:1053:43:1540:-116.918,0,-73.1034	0/0:133:133,0:133:4698:0:0:0,-40.037,-422.984	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315
chr08	5616458	.	C	T	151495	PASS	AB=0.488792;ABP=6.2715;AC=150;AF=0.815217;AN=184;AO=6710;CIGAR=1X;DP=8258;DPB=8258;DPRA=0;EPP=13333;EPPR=962.559;GTI=0;LEN=1;MEANALT=1.04348;MQM=59.9945;MQMR=59.9741;NS=92;NUMALT=1;ODDS=4.05509;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=239792;QR=54351;RO=1544;RPL=147;RPP=13324.7;RPPR=962.559;RPR=6563;RUN=1;SAF=6709;SAP=14564.9;SAR=1;SRF=1544;SRP=3355.76;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:1,34:1:36:34:1224:-106.869,-6.93778,0	1/1:95:0,95:0:0:95:3388:-305.136,-28.5979,0	0/1:99:65,34:65:2261:34:1212:-79.5844,0,-173.951	1/1:161:0,161:0:0:161:5736:-516.358,-48.4658,0	0/1:48:33,15:33:1163:15:540:-34.4871,0,-90.299	0/1:26:17,9:17:583:9:324:-21.6791,0,-44.9655	1/1:114:1,113:1:36:113:4024:-358.75,-30.7191,0	1/1:134:0,134:0:0:134:4787:-430.987,-40.338,0	1/1:76:0,76:0:0:76:2712:-244.324,-22.8783,0	1/1:82:0,82:0:0:82:2928:-263.736,-24.6845,0	1/1:54:0,54:0:0:54:1922:-173.256,-16.2556,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:71:0,71:0:0:71:2530:-227.951,-21.3731,0	1/1:66:0,66:0:0:66:2337:-210.588,-19.868,0	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	1/1:98:0,98:0:0:98:3501:-315.3,-29.5009,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:27:0,27:0:0:27:968:-87.435,-8.12781,0	1/1:160:0,160:0:0:160:5719:-514.828,-48.1648,0	1/1:131:0,131:0:0:131:4679:-421.27,-39.4349,0	0/1:103:72,31:72:2554:31:1112:-69.3853,0,-199.104	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:90:43,47:43:1536:47:1663:-122.864,0,-111.44	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:241:109,132:109:3816:132:4716:-352.051,0,-271.095	0/1:174:80,94:80:2819:94:3363:-250.507,0,-201.569	1/1:38:2,36:2:72:36:1283:-108.936,-4.60242,0	1/1:198:0,198:0:0:198:7066:-636.001,-59.6039,0	1/1:118:1,117:1:36:117:4192:-373.863,-31.9233,0	0/1:89:51,38:51:1777:38:1352:-95.1887,0,-133.374	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:3,5:3:95:5:180:-14.1438,0,-6.45597	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:266:1,265:1:36:265:9479:-849.469,-76.4757,0	0/1:181:96,85:96:3374:85:3033:-218.714,0,-249.391	0/1:63:20,43:20:716:43:1544:-120.288,0,-45.8028	.:.:.:.:.:.:.:.	0/1:117:56,61:56:2000:61:2180:-161.246,0,-145.053	0/1:29:9,20:9:296:20:720:-56.3989,0,-18.2287	0/1:88:43,45:43:1505:45:1604:-118.16,0,-109.25	0/1:86:50,36:50:1746:36:1296:-91.0554,0,-131.531	1/1:87:0,87:0:0:87:3098:-279.048,-26.1896,0	0/1:56:37,19:37:1302:19:680:-44.6715,0,-100.622	0/1:126:62,64:62:2199:64:2284:-167.892,0,-160.245	0/1:170:85,85:85:2988:85:3030:-221.755,0,-217.978	1/1:103:1,102:1:36:102:3668:-326.724,-27.4078,0	1/1:219:3,216:3:100:216:7750:-688.199,-56.5951,0	1/1:130:0,129:0:0:129:4624:-415.963,-38.8329,0	.:.:.:.:.:.:.:.	0/1:123:63,60:63:2243:60:2152:-156.921,0,-165.106	0/1:37:23,14:23:798:14:504:-34.56,0,-60.9985	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/1:105:48,56:48:1699:56:2008:-149.385,0,-121.587	0/1:39:27,12:27:952:12:428:-27.1186,0,-74.255	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:12:6,6:6:199:6:216:-16.1782,0,-14.6231	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:91:2,89:2:68:89:3174:-279.428,-20.936,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:193:98,95:98:3484:95:3399:-248.025,0,-255.675	1/1:157:1,156:1:36:156:5584:-499.085,-43.6634,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	1/1:62:0,62:0:0:62:2203:-198.535,-18.6639,0	1/1:116:1,115:1:32:115:4094:-365.447,-31.7202,0	0/1:102:69,33:69:2429:33:1173:-75.1721,0,-188.16	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:50:0,50:0:0:50:1780:-160.483,-15.0515,0	1/1:94:2,92:2:72:92:3296:-290.022,-21.4601,0	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	1/1:103:0,103:0:0:103:3649:-328.615,-31.0061,0	0/1:74:36,38:36:1279:38:1360:-100.424,0,-93.1362	1/1:105:0,105:0:0:105:3730:-335.902,-31.6082,0	1/1:168:0,168:0:0:168:6031:-542.891,-50.573,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:120:1,119:1:36:119:4252:-379.26,-32.5253,0	0/1:12:4,7:4:144:7:248:-18.9937,0,-9.64246	1/1:204:0,204:0:0:204:7268:-654.173,-61.4101,0	0/1:110:51,59:51:1811:59:2095:-155.706,0,-130.158	1/1:164:0,164:0:0:164:5851:-526.701,-49.3689,0	1/1:121:1,120:1:36:120:4307:-384.206,-32.8264,0	1/1:82:0,82:0:0:82:2939:-264.74,-24.6845,0	0/1:114:50,64:50:1744:64:2283:-171.414,0,-122.924	1/1:180:1,179:1:36:179:6428:-574.998,-50.5871,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:77:34,43:34:1212:43:1544:-116.074,0,-86.2066	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:37:13,23:13:451:23:810:-62.0894,0,-29.7887	0/1:80:27,53:27:947:53:1894:-146.656,0,-61.4614	0/1:73:43,30:43:1493:30:1067:-74.366,0,-112.683	1/1:136:0,136:0:0:136:4829:-434.767,-40.9401,0	1/1:111:0,111:0:0:111:3977:-358.119,-33.4143,0
chr08	5616487	.	CGAC	TGAC,TGAT	165353	PASS	AB=0.4977,0.498536;ABP=3.12019,3.0548;AC=153,31;AF=0.831522,0.168478;AN=184;AO=6452,1212;CIGAR=1X3M,1X2M1X;DP=7695;DPB=7711.5;DPRA=0,1.04384;EPP=14013.4,2634.83;EPPR=0;GTI=2;LEN=1,4;MEANALT=1.76087,2.325;MQM=59.9949,59.9348;MQMR=0;NS=92;NUMALT=2;ODDS=1.30059;PAIRED=0,0;PAIREDR=0;PAO=33,33;PQA=1144.5,1144.5;PQR=0;PRO=0;QA=227431,42091;QR=0;RO=0;RPL=6452,1212;RPP=14013.4,2634.83;RPPR=0;RPR=0,0;RUN=1,1;SAF=6452,1212;SAP=14013.4,2634.83;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,34,1:0:0:34,1:1199,36:-107.855,-10.235,0,-104.918,-6.93778,-104.617	1/1:92:0,92,0:0:0:92,0:3240,0:-291.763,-27.6948,0,-291.763,-27.6948,-291.763	1/2:99:0,33,66:0:0:33,66:1163,2323:-283.966,-189.277,-179.343,-94.8671,0,-74.9991	1/1:154:0,153,0:0:0:153,0:5404,0:-486.223,-46.0576,0,-486.223,-46.0576,-486.223	1/2:47:0,14,32:0:0:14,32:496,1128:-132.32,-91.9128,-87.6983,-40.4749,0,-30.842	1/2:27:0,9,18:0:0:9,18:320,633:-77.585,-51.5053,-48.796,-26.4331,0,-21.0145	1/1:106:0,104,0:0:0:104,0:3672,0:-330.404,-31.3071,0,-330.404,-31.3071,-330.404	1/1:127:0,126,0:0:0:126,0:4464,0:-401.513,-37.9298,0,-401.513,-37.9298,-401.513	1/1:73:0,71,0:0:0:71,0:2502,0:-225.121,-21.3731,0,-225.121,-21.3731,-225.121	1/1:78:0,77,0:0:0:77,0:2699,0:-242.812,-23.1793,0,-242.812,-23.1793,-242.812	1/1:55:0,55,0:0:0:55,0:1924,0:-173.375,-16.5567,0,-173.375,-16.5567,-173.375	1/1:63:0,63,0:0:0:63,0:2225,0:-200.513,-18.9649,0,-200.513,-18.9649,-200.513	1/1:64:0,63,0:0:0:63,0:2221,0:-199.734,-18.9649,0,-199.734,-18.9649,-199.734	1/1:65:0,65,0:0:0:65,0:2274,0:-204.92,-19.567,0,-204.92,-19.567,-204.92	1/1:65:0,65,0:0:0:65,0:2293,0:-206.512,-19.567,0,-206.512,-19.567,-206.512	1/1:68:0,68,0:0:0:68,0:2397,0:-215.927,-20.47,0,-215.927,-20.47,-215.927	1/1:91:0,91,0:0:0:91,0:3212,0:-289.244,-27.3937,0,-289.244,-27.3937,-289.244	1/1:55:0,55,0:0:0:55,0:1940,0:-174.815,-16.5567,0,-174.815,-16.5567,-174.815	1/1:24:0,24,0:0:0:24,0:849,0:-76.6697,-7.22472,0,-76.6697,-7.22472,-76.6697	1/1:152:0,152,0:0:0:152,0:5371,0:-483.527,-45.7566,0,-483.527,-45.7566,-483.527	1/1:128:0,127,0:0:0:127,0:4465,0:-401.709,-38.2308,0,-401.709,-38.2308,-401.709	1/2:37:0,31,6:0:0:31,6:1104,194:-105.982,-15.9714,-6.63946,-90.3387,0,-88.5325	1/1:44:0,44,0:0:0:44,0:1559,0:-140.601,-13.2453,0,-140.601,-13.2453,-140.601	1/2:82:0,41,40:0:0:41,40:1453,1387:-230.917,-112.548,-100.206,-118.186,0,-106.145	1/1:46:0,46,0:0:0:46,0:1630,0:-146.87,-13.8474,0,-146.87,-13.8474,-146.87	1/1:128:0,126,2:0:0:126,2:4427,71:-398.191,-37.9298,0,-392.405,-31.85,-391.803	1/2:172:0,92,80:0:0:92,80:3237,2777:-489.535,-226.028,-198.333,-263.797,0,-239.715	1/1:37:0,37,0:0:0:37,0:1307,0:-117.872,-11.1381,0,-117.872,-11.1381,-117.872	1/1:192:0,192,0:0:0:192,0:6721,0:-604.856,-57.7978,0,-604.856,-57.7978,-604.856	1/1:115:0,114,1:0:0:114,1:4050,36:-364.328,-34.3174,0,-361.39,-31.0202,-361.089	1/2:88:0,39,49:0:0:39,49:1362,1678:-247.279,-136.489,-124.748,-111.078,0,-96.3276	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:8:0,5,3:0:0:5,3:171,91:-21.4907,-7.58818,-6.08303,-14.2203,0,-13.3172	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:4:0,4,0:0:0:4,0:135,0:-12.4825,-1.20412,0,-12.4825,-1.20412,-12.4825	1/1:253:0,253,0:0:0:253,0:8879,0:-798.986,-76.1606,0,-798.986,-76.1606,-798.986	1/2:181:0,85,96:0:0:85,96:2994,3371:-518.403,-274.651,-249.064,-244.044,0,-215.145	1/2:62:0,43,19:0:0:43,19:1506,647:-175.372,-52.8282,-39.8839,-122.887,0,-117.168	.:.:.:.:.:.:.:.	1/2:116:0,57,58:0:0:57,58:1995,2008:-325.566,-163.251,-146.092,-162.381,0,-144.922	1/2:29:0,19,10:0:0:19,10:676,325:-81.668,-26.5551,-20.8355,-55.4484,0,-52.4381	1/2:93:0,45,48:0:0:45,48:1584,1657:-263.917,-134.964,-121.418,-129.301,0,-114.852	1/2:87:0,34,52:0:0:34,52:1192,1815:-244.616,-147.617,-137.382,-96.9887,0,-81.3351	1/1:83:0,82,0:0:0:82,0:2892,0:-260.157,-24.6845,0,-260.157,-24.6845,-260.157	1/2:20:0,18,2:0:0:18,2:625,66:-56.4311,-5.6358,-0.217257,-51.0971,0,-50.4951	1/2:121:0,64,56:0:0:64,56:2266,1914:-339.995,-155.406,-136.14,-184.665,0,-167.807	1/2:166:0,81,82:0:0:81,82:2840,2885:-466.055,-234.953,-210.569,-231.201,0,-206.516	1/1:95:0,93,1:0:0:93,1:3306,36:-297.341,-27.9958,0,-294.403,-25.1186,-294.102	1/1:215:0,211,2:0:0:211,2:7462,66:-671.289,-63.5173,0,-665.953,-58.1914,-665.351	1/1:125:0,125,0:0:0:125,0:4390,0:-395.216,-37.6288,0,-395.216,-37.6288,-395.216	.:.:.:.:.:.:.:.	1/2:126:0,58,68:0:0:58,68:2038,2366:-358.551,-192.67,-175.21,-166.172,0,-145.702	1/1:13:0,12,1:0:0:12,1:424,35:-38.1463,-3.61236,0,-35.2988,-0.414761,-34.9978	1/2:7:0,5,2:0:0:5,2:165,65:-18.9134,-5.57123,-4.06608,-13.6685,0,-13.0664	1/2:104:0,55,49:0:0:55,49:1933,1689:-294.763,-137.424,-120.868,-157.569,0,-142.819	1/2:35:0,11,24:0:0:11,24:396,827:-99.7771,-67.4615,-64.1501,-32.6167,0,-25.392	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:7:0,5,2:0:0:5,2:180,71:-20.8306,-6.14,-4.63485,-15.04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chr08	5616659	.	GGCAA	TGCAA,TGCAC	584990	PASS	AB=0.523517,0.468798;ABP=34.2627,58.0267;AC=158,30;AF=0.840426,0.159574;AN=188;AO=18488,3123;CIGAR=1X4M,1X3M1X;DP=21760;DPB=21759.6;DPRA=0,0.959744;EPP=40079.7,6784.52;EPPR=9.52472;GTI=0;LEN=1,5;MEANALT=2.78723,3.28846;MQM=59.8319,58.9459;MQMR=60;NS=94;NUMALT=2;ODDS=50.7443;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=1;QA=644616,106450;QR=92;RO=3;RPL=7290,1470;RPP=1796.81,26.2957;RPPR=9.52472;RPR=11198,1653;RUN=1,1;SAF=7294,1470;SAP=1789.47,26.2957;SAR=11194,1653;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:137:0,134,1:0:0:134,1:4661,36:-419.348,-40.338,0,-416.419,-37.3837,-416.118	1/1:284:0,284,0:0:0:284,0:9844,0:-885.933,-85.4925,0,-885.933,-85.4925,-885.933	1/2:361:0,175,185:0:0:175,185:6191,6351:-1019.72,-515.461,-462.78,-504.253,0,-448.562	1/1:439:0,436,1:0:0:436,1:15256,30:-1372.31,-131.249,0,-1369.91,-128.857,-1369.61	1/2:105:0,70,35:0:0:70,35:2452,1205:-296.873,-97.3581,-76.286,-199.859,0,-189.323	1/2:101:0,48,53:0:0:48,53:1697,1856:-289.531,-151.321,-136.871,-138.562,0,-122.608	1/1:264:0,261,0:0:0:261,0:9139,0:-822.129,-78.5688,0,-822.129,-78.5688,-822.129	1/1:296:0,291,2:0:0:291,2:10229,66:-920.219,-87.5997,0,-914.884,-82.2647,-914.282	1/1:284:0,282,0:0:0:282,0:9743,0:-876.503,-84.8905,0,-876.503,-84.8905,-876.503	1/1:178:0,176,0:0:0:176,0:6188,0:-556.664,-52.9813,0,-556.664,-52.9813,-556.664	1/1:248:0,245,0:0:0:245,0:8435,0:-758.845,-73.7524,0,-758.845,-73.7524,-758.845	1/1:189:0,187,0:0:0:187,0:6616,0:-595.162,-56.2926,0,-595.162,-56.2926,-595.162	1/1:185:0,184,0:0:0:184,0:6504,0:-585.074,-55.3895,0,-585.074,-55.3895,-585.074	1/1:176:0,175,0:0:0:175,0:5994,0:-539.363,-52.6803,0,-539.363,-52.6803,-539.363	1/1:194:0,192,0:0:0:192,0:6741,0:-606.414,-57.7978,0,-606.414,-57.7978,-606.414	1/1:158:0,156,0:0:0:156,0:5447,0:-490.004,-46.9607,0,-490.004,-46.9607,-490.004	1/1:107:0,107,0:0:0:107,0:3701,0:-333.024,-32.2102,0,-333.024,-32.2102,-333.024	1/1:87:0,85,0:0:0:85,0:2975,0:-267.596,-25.5876,0,-267.596,-25.5876,-267.596	1/1:167:0,167,0:0:0:167,0:5802,0:-522.271,-50.272,0,-522.271,-50.272,-522.271	1/1:408:0,404,1:0:0:404,1:14157,33:-1273.57,-121.616,0,-1270.9,-118.95,-1270.6	1/1:325:0,324,1:0:0:324,1:11279,30:-1014.72,-97.5337,0,-1012.32,-94.8352,-1012.02	1/2:132:0,65,67:0:0:65,67:2286,2258:-369.032,-182.942,-163.375,-186.434,0,-166.265	1/1:262:0,261,0:0:0:261,0:9076,0:-816.589,-78.5688,0,-816.589,-78.5688,-816.589	1/2:247:0,136,111:0:0:136,111:4738,3772:-691.303,-306.071,-265.13,-385.576,0,-352.162	1/1:157:0,157,0:0:0:157,0:5532,0:-498.004,-47.2617,0,-498.004,-47.2617,-498.004	1/2:538:0,280,251:0:0:280,251:9804,8499:-1486.05,-688.635,-604.347,-797.411,0,-721.853	1/2:445:0,227,216:0:0:227,216:8003,7400:-1251.97,-600.422,-532.088,-651.681,0,-586.659	1/1:92:0,90,0:0:0:90,0:3148,0:-283.191,-27.0927,0,-283.191,-27.0927,-283.191	1/1:457:0,455,0:0:0:455,0:15970,0:-1436.71,-136.969,0,-1436.71,-136.969,-1436.71	1/1:222:0,214,8:0:0:214,8:7432,277:-668.576,-64.4204,0,-646.064,-41.5626,-643.656	1/2:363:0,176,186:0:0:176,186:6139,6301:-1009.91,-510.63,-457.648,-499.261,0,-443.269	1/1:161:0,155,4:0:0:155,4:5312,137:-477.89,-46.6597,0,-466.769,-35.5335,-465.564	1/1:387:0,386,0:0:0:386,0:13357,0:-1201.2,-116.198,0,-1201.2,-116.198,-1201.2	1/1:232:0,227,4:0:0:227,4:7829,136:-704.187,-68.3338,0,-693.155,-57.2063,-691.951	1/1:294:0,294,0:0:0:294,0:10063,0:-905.418,-88.5028,0,-905.418,-88.5028,-905.418	1/1:354:0,353,0:0:0:353,0:12196,0:-1096.82,-106.264,0,-1096.82,-106.264,-1096.82	1/1:406:0,401,1:0:0:401,1:14021,24:-1261.12,-120.713,0,-1259.26,-118.868,-1258.96	1/2:196:0,99,95:0:0:99,95:3485,3214:-544.132,-260.421,-230.619,-283.764,0,-255.166	1/2:191:0,142,48:0:0:142,48:4916,1649:-533.233,-133.746,-90.9999,-399.56,0,-385.11	1/1:121:0,120,0:0:0:120,0:4146,0:-372.866,-36.1236,0,-372.866,-36.1236,-372.866	1/2:216:0,112,101:0:0:112,101:3933,3427:-597.863,-277.757,-244.041,-320.092,0,-289.688	1/2:100:0,70,30:0:0:70,30:2409,1026:-279.251,-83.6017,-62.5296,-195.992,0,-186.961	1/2:268:0,164,101:0:0:164,101:5743,3423:-744.773,-277.564,-228.195,-467.257,0,-436.853	1/2:203:0,105,97:0:0:105,97:3617,3320:-563.185,-269.4,-237.791,-293.769,0,-264.569	1/1:146:0,144,0:0:0:144,0:5068,0:-455.902,-43.3483,0,-455.902,-43.3483,-455.902	1/2:169:0,94,75:0:0:94,75:3282,2569:-475.321,-208.636,-180.34,-267.03,0,-244.452	1/2:219:0,118,98:0:0:118,98:4136,3347:-607.75,-271.22,-235.698,-336.539,0,-307.038	1/2:280:0,149,129:0:0:149,129:5199,4338:-774.14,-351.287,-306.433,-422.89,0,-384.057	1/1:242:0,240,0:0:0:240,0:8427,0:-758.125,-72.2472,0,-758.125,-72.2472,-758.125	1/1:259:0,257,0:0:0:257,0:9005,0:-810.012,-77.3647,0,-810.012,-77.3647,-810.012	1/1:234:0,233,0:0:0:233,0:8101,0:-728.772,-70.14,0,-728.772,-70.14,-728.772	1/1:115:0,110,5:0:0:110,5:3792,174:-341.126,-33.1133,0,-326.979,-18.6178,-325.473	1/2:178:0,100,71:0:0:100,71:3540,2462:-488.382,-200.064,-169.961,-288.32,0,-266.946	1/2:104:0,57,45:0:0:57,45:2026,1524:-288.637,-123.531,-106.373,-165.093,0,-151.546	1/1:233:0,228,3:0:0:228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chr08	5619810	.	GCCC	GCCA	21660	PASS	AB=0.494074;ABP=3.83385;AC=36;AF=0.191489;AN=188;AO=1347;CIGAR=3M1X;DP=7784;DPB=7787.25;DPRA=1.06571;EPP=2884.72;EPPR=13813.7;GTI=2;LEN=1;MEANALT=1.27907;MQM=59.8953;MQMR=59.9875;NS=94;NUMALT=1;ODDS=4.42633;PAIRED=0;PAIREDR=0;PAO=4.5;PQA=140.5;PQR=0;PRO=3;QA=47082;QR=221120;RO=6400;RPL=1342;RPP=2884.72;RPPR=13813.7;RPR=5;RUN=1;SAF=1347;SAP=2927.98;SAR=0;SRF=6400;SRP=13900.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1860:0:0:0,-16.2556,-167.677	0/0:81:81,0:81:2788:0:0:0,-24.3834,-251.164	0/1:125:72,53:72:2504:53:1847:-128.881,0,-187.984	0/0:152:151,1:151:5152:1:36:0,-42.1583,-460.239	0/1:67:31,36:31:1065:36:1254:-92.9856,0,-75.986	0/1:35:21,10:21:732:10:356:-22.6906,0,-56.5099	0/0:98:98,0:98:3382:0:0:0,-29.5009,-303.701	0/0:112:112,0:112:3813:0:0:0,-33.7154,-343.375	0/0:113:113,0:113:3936:0:0:0,-34.0164,-354.443	0/0:95:95,0:95:3297:0:0:0,-28.5978,-296.952	0/0:52:52,0:52:1747:0:0:0,-15.6536,-157.508	0/0:93:93,0:93:3193:0:0:0,-27.9958,-287.6	0/0:93:93,0:93:3186:0:0:0,-27.9958,-286.967	0/0:57:57,0:57:1990:0:0:0,-17.1587,-179.375	0/0:69:69,0:69:2387:0:0:0,-20.7711,-215.087	0/0:57:57,0:57:1956:0:0:0,-17.1587,-176.312	0/0:19:19,0:19:642:0:0:0,-5.71957,-58.0954	0/0:25:25,0:25:871:0:0:0,-7.52575,-78.7057	0/0:36:35,0:35:1203:0:0:0,-10.536,-108.212	0/0:230:225,0:225:7890:0:0:0,-67.7317,-709.791	0/0:120:119,0:119:4136:0:0:0,-35.8226,-372.073	0/1:48:20,28:20:707:28:988:-74.7264,0,-49.4492	0/0:76:75,1:75:2576:1:36:0,-19.28,-228.49	0/1:51:26,25:26:889:25:874:-63.6227,0,-64.9678	0/0:69:68,1:68:2359:1:36:0,-17.1728,-208.969	0/1:200:109,89:109:3805:89:3019:-211.863,0,-282.572	0/1:219:106,112:106:3654:112:3932:-288.243,0,-263.236	0/0:26:26,0:26:907:0:0:0,-7.82678,-81.9451	0/0:196:196,0:196:6811:0:0:0,-59.0019,-613.08	0/0:148:145,3:145:5010:3:108:0,-34.4773,-440.982	0/1:81:40,41:40:1397:41:1450:-106.348,0,-101.642	0/1:6:5,1:5:178:1:32:-1.39313,0,-14.5625	0/0:9:9,0:9:323:0:0:0,-2.70927,-29.4151	0/1:3:1,2:1:28:2:68:-5.55462,0,-1.89664	0/0:11:11,0:11:370:0:0:0,-3.31133,-33.623	0/0:27:27,0:27:911:0:0:0,-8.12781,-82.2956	0/0:211:209,0:209:7197:0:0:0,-62.9153,-647.454	0/1:76:47,29:47:1629:29:1036:-70.6756,0,-124.016	0/1:37:18,19:18:605:19:661:-48.6687,0,-43.6287	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.575	0/1:159:88,71:88:3051:71:2459:-173.703,0,-226.959	0/1:31:14,17:14:497:17:586:-43.7308,0,-35.733	0/1:105:64,40:64:2248:40:1410:-95.6568,0,-171.065	0/1:58:29,29:29:1008:29:1029:-75.4532,0,-73.5707	0/0:49:48,0:48:1602:0:0:0,-14.4494,-144.099	0/1:126:57,69:57:1945:69:2424:-180.483,0,-137.394	0/1:69:42,27:42:1426:27:968:-66.6663,0,-107.859	0/1:106:55,51:55:1934:51:1789:-129.263,0,-142.308	0/0:98:98,0:98:3380:0:0:0,-29.5009,-304.42	0/0:120:119,0:119:4099:0:0:0,-35.8226,-368.782	0/0:137:137,0:137:4745:0:0:0,-41.2411,-427.221	0/1:11:5,6:5:173:6:216:-16.4792,0,-12.5982	0/1:60:25,34:25:848:34:1204:-90.6521,0,-58.6149	0/1:46:29,17:29:1000:17:596:-40.1204,0,-76.4613	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:121:57,64:57:1955:64:2227:-164.257,0,-139.796	0/1:33:16,14:16:562:14:496:-35.59,0,-41.5261	0/0:10:10,0:10:332:0:0:0,-3.0103,-30.2009	0/1:20:12,8:12:419:8:276:-19.1546,0,-32.0231	0/0:87:87,0:87:3020:0:0:0,-26.1896,-272.033	0/0:103:103,0:103:3532:0:0:0,-31.0061,-318.094	0/0:4:4,0:4:138:0:0:0,-1.20412,-12.76	0/1:127:65,60:65:2270:60:2124:-153.46,0,-166.593	0/0:161:161,0:161:5503:0:0:0,-48.4658,-495.414	0/0:86:86,0:86:2995:0:0:0,-25.8886,-269.782	0/0:48:48,0:48:1654:0:0:0,-14.4494,-149.144	0/0:123:120,0:120:4165:0:0:0,-36.1236,-374.68	0/1:204:70,134:70:2460:134:4659:-358.011,0,-160.186	0/0:55:55,0:55:1873:0:0:0,-16.5566,-168.845	0/0:90:90,0:90:3103:0:0:0,-27.0927,-279.502	0/0:58:58,0:58:2016:0:0:0,-17.4597,-181.712	0/0:36:36,0:36:1224:0:0:0,-10.8371,-110.457	0/0:113:113,0:113:3930:0:0:0,-34.0164,-353.9	0/1:83:35,48:35:1190:48:1683:-126.761,0,-82.4134	0/0:128:125,1:125:4330:1:36:0,-34.6913,-386.284	0/0:139:138,0:138:4837:0:0:0,-41.5421,-435.133	0/0:95:95,0:95:3240:0:0:0,-28.5978,-291.826	0/0:103:102,1:102:3553:1:36:0,-27.4078,-316.387	0/0:8:8,0:8:266:0:0:0,-2.40824,-24.2635	0/0:111:110,1:110:3834:1:36:0,-29.8161,-341.666	0/1:98:47,51:47:1630:51:1771:-130.17,0,-117.485	0/0:194:192,1:192:6616:1:32:0,-55.2394,-592.324	0/0:57:56,0:56:1889:0:0:0,-16.8577,-169.921	0/0:68:68,0:68:2331:0:0:0,-20.47,-210.051	0/1:43:23,20:23:801:20:659:-46.6723,0,-59.4625	0/0:125:124,0:124:4298:0:0:0,-37.3277,-386.646	0/0:23:23,0:23:782:0:0:0,-6.92369,-70.6936	0/1:48:25,23:25:877:23:820:-59.6731,0,-64.7974	0/0:71:71,0:71:2460:0:0:0,-21.3731,-221.657	0/1:57:26,31:26:889:31:1068:-79.1359,0,-63.1617	0/1:86:43,42:43:1498:42:1495:-108.896,0,-109.163	0/1:61:28,33:28:933:33:1142:-84.7211,0,-65.9104	0/0:141:139,0:139:4832:0:0:0,-41.8432,-434.686	0/0:107:107,0:107:3705:0:0:0,-32.2102,-333.658
chr08	5623185	.	G	A	149665	PASS	AB=0.505203;ABP=3.50746;AC=154;AF=0.819149;AN=188;AO=5386;CIGAR=1X;DP=6448;DPB=6448;DPRA=0;EPP=23.6026;EPPR=19.2216;GTI=1;LEN=1;MEANALT=1.01064;MQM=58.1992;MQMR=59.8407;NS=94;NUMALT=1;ODDS=2.7074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191768;QR=37474;RO=1061;RPL=5360;RPP=11473.8;RPPR=2289.6;RPR=26;RUN=1;SAF=2780;SAP=15.2167;SAR=2606;SRF=573;SRP=17.7972;SRR=488;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:540:-48.8962,-4.51545,0	1/1:54:0,54:0:0:54:1914:-172.329,-16.2556,0	0/1:109:51,58:51:1812:58:2067:-153.186,0,-130.546	1/1:148:0,148:0:0:148:5251:-472.008,-44.5524,0	0/1:5:2,3:2:68:3:108:-8.56656,0,-4.95256	0/1:19:6,13:6:212:13:468:-36.7083,0,-13.7052	1/1:49:0,49:0:0:49:1739:-156.689,-14.7505,0	1/1:113:0,113:0:0:113:4019:-361.632,-34.0164,0	1/1:78:0,78:0:0:78:2776:-249.807,-23.4803,0	1/1:68:0,68:0:0:68:2413:-217.04,-20.47,0	1/1:86:1,85:1:36:85:3027:-268.564,-22.2903,0	1/1:156:1,155:1:36:155:5524:-492.959,-43.3624,0	1/1:110:0,110:0:0:110:3919:-352.213,-33.1133,0	1/1:113:1,112:1:36:112:3992:-355.387,-30.4181,0	1/1:91:0,91:0:0:91:3263:-293.825,-27.3937,0	1/1:102:0,102:0:0:102:3627:-325.855,-30.7051,0	1/1:78:0,78:0:0:78:2767:-248.848,-23.4803,0	1/1:66:0,66:0:0:66:2364:-212.905,-19.868,0	1/1:34:0,34:0:0:34:1212:-109.328,-10.235,0	1/1:69:0,69:0:0:69:2453:-220.859,-20.7711,0	1/1:104:0,104:0:0:104:3711:-333.728,-31.3071,0	0/1:29:22,7:22:779:7:252:-14.2703,0,-61.7022	1/1:25:0,25:0:0:25:873:-78.875,-7.52575,0	0/1:23:7,16:7:252:16:576:-45.2329,0,-16.1053	1/1:32:0,32:0:0:32:1135:-102.311,-9.63296,0	0/1:135:55,79:55:1943:79:2824:-213.598,0,-133.149	0/1:138:68,70:68:2408:70:2504:-183.964,0,-175.409	1/1:44:0,44:0:0:44:1547:-139.395,-13.2453,0	1/1:160:0,160:0:0:160:5719:-514.714,-48.1648,0	1/1:72:4,68:4:136:68:2404:-203.844,-9.09862,0	0/1:53:25,28:25:883:28:1008:-75.0292,0,-63.8328	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	1/1:7:0,7:0:0:7:248:-22.6558,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	1/1:7:0,7:0:0:7:248:-22.6608,-2.10721,0	1/1:174:0,174:0:0:174:6202:-557.408,-52.3792,0	0/1:27:11,16:11:388:16:576:-44.0332,0,-27.1296	0/1:53:25,28:25:896:28:1008:-74.9454,0,-65.0058	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:130:58,72:58:2060:72:2580:-192.871,0,-146.535	0/1:21:13,8:13:451:8:288:-19.9395,0,-34.5982	0/1:72:36,36:36:1266:36:1259:-91.8155,0,-92.5666	0/1:79:29,50:29:1014:50:1780:-136.6,0,-67.7886	1/1:67:1,66:1:36:66:2350:-208.102,-16.5707,0	0/1:41:15,26:15:527:26:916:-70.3541,0,-35.418	0/1:68:36,32:36:1267:32:1142:-82.5764,0,-93.8537	0/1:89:53,36:53:1870:36:1292:-89.7889,0,-141.786	1/1:43:0,43:0:0:43:1548:-139.457,-12.9443,0	1/1:93:0,93:0:0:93:3336:-300.445,-27.9958,0	1/1:39:0,39:0:0:39:1391:-125.46,-11.7402,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:75:41,34:41:1456:34:1210:-86.5242,0,-108.759	0/1:25:8,17:8:276:17:597:-46.5015,0,-17.6495	1/1:2:0,2:0:0:2:72:-6.82968,-0.60206,0	0/1:120:52,68:52:1817:68:2420:-181.873,0,-127.685	0/1:20:9,11:9:324:11:385:-28.9562,0,-23.4853	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:54:0,54:0:0:54:1916:-172.671,-16.2556,0	1/1:123:3,120:3:108:120:4281:-375.228,-26.9515,0	1/1:8:0,8:0:0:8:288:-26.267,-2.40824,0	0/1:112:66,46:66:2352:46:1639:-114.083,0,-178.224	1/1:98:0,98:0:0:98:3487:-313.895,-29.5009,0	1/1:50:0,50:0:0:50:1777:-160.111,-15.0515,0	1/1:74:0,74:0:0:74:2617:-235.645,-22.2762,0	1/1:61:0,61:0:0:61:2165:-194.814,-18.3628,0	0/1:65:48,17:48:1694:17:612:-35.816,0,-133.142	1/1:64:0,64:0:0:64:2281:-204.569,-19.2659,0	1/1:50:0,50:0:0:50:1792:-161.383,-15.0515,0	1/1:62:0,62:0:0:62:2190:-197.342,-18.6639,0	1/1:17:0,17:0:0:17:600:-54.3269,-5.11751,0	1/1:68:0,68:0:0:68:2424:-218.16,-20.47,0	0/1:62:28,34:28:1000:34:1208:-90.3044,0,-71.5603	1/1:105:3,102:3:108:102:3647:-318.242,-21.5346,0	1/1:127:0,127:0:0:127:4512:-405.864,-38.2308,0	1/1:74:0,74:0:0:74:2638:-237.449,-22.2762,0	1/1:105:2,103:2:72:103:3652:-321.831,-24.7714,0	0/1:14:7,7:7:239:7:248:-18.443,0,-17.6283	1/1:69:0,69:0:0:69:2476:-222.814,-20.7711,0	0/1:82:29,53:29:1014:53:1878:-144.526,0,-66.8855	1/1:116:0,116:0:0:116:4156:-373.577,-34.9195,0	1/1:82:0,82:0:0:82:2917:-262.115,-24.6845,0	1/1:85:0,85:0:0:85:3029:-272.798,-25.5876,0	0/1:52:24,28:24:842:28:1004:-74.9709,0,-60.3981	1/1:169:0,169:0:0:169:5946:-535.04,-50.8741,0	1/1:30:0,30:0:0:30:1080:-97.4722,-9.0309,0	0/1:97:51,46:51:1795:46:1644:-118.833,0,-132.632	1/1:100:0,100:0:0:100:3562:-320.219,-30.103,0	0/1:55:29,26:29:999:26:924:-66.9026,0,-73.6595	0/1:133:62,71:62:2190:71:2515:-186.459,0,-157.328	0/1:88:67,21:67:2384:21:748:-41.126,0,-188.327	1/1:91:0,91:0:0:91:3246:-292.195,-27.3937,0	1/1:142:0,142:0:0:142:5033:-452.626,-42.7463,0
chr08	5669087	.	C	T	222994	PASS	AB=0.44133;ABP=111.81;AC=152;AF=0.808511;AN=188;AO=8130;CIGAR=1X;DP=10184;DPB=10184;DPRA=0;EPP=17613.7;EPPR=4448.01;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9856;MQMR=59.9775;NS=94;NUMALT=1;ODDS=1.37688;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287969;QR=72319;RO=2047;RPL=4019;RPP=5.27098;RPPR=58.6401;RPR=4111;RUN=1;SAF=4016;SAP=5.57547;SAR=4114;SRF=909;SRP=58.6401;SRR=1138;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	1/1:94:0,94:0:0:94:3327:-299.648,-28.2968,0	0/1:171:87,84:87:3070:84:2984:-217.315,0,-225.052	1/1:231:0,231:0:0:231:8178:-736.041,-69.5379,0	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5887	0/1:24:14,10:14:491:10:356:-25.1565,0,-37.2964	1/1:114:0,114:0:0:114:4083:-367.655,-34.3174,0	1/1:123:0,123:0:0:123:4333:-390.148,-37.0267,0	1/1:129:0,128:0:0:128:4526:-407.151,-38.5318,0	1/1:144:0,144:0:0:144:5075:-456.9,-43.3483,0	1/1:118:0,118:0:0:118:4115:-370.535,-35.5215,0	1/1:173:0,173:0:0:173:6090:-548.208,-52.0782,0	1/1:119:0,119:0:0:119:4208:-378.901,-35.8226,0	1/1:124:0,124:0:0:124:4412:-397.255,-37.3277,0	1/1:110:0,110:0:0:110:3898:-351.015,-33.1133,0	1/1:115:0,115:0:0:115:4119:-370.824,-34.6185,0	1/1:80:0,79:0:0:79:2780:-250.08,-23.7814,0	1/1:75:0,75:0:0:75:2652:-238.926,-22.5773,0	1/1:70:1,69:1:36:69:2436:-215.896,-17.4738,0	1/1:88:0,88:0:0:88:3128:-281.746,-26.4906,0	1/1:184:0,184:0:0:184:6536:-588.327,-55.3895,0	0/1:40:31,9:31:1098:9:324:-17.4647,0,-87.0874	1/1:120:0,120:0:0:120:4245:-382.23,-36.1236,0	0/1:63:28,35:28:987:35:1244:-93.2851,0,-70.1781	1/1:37:0,37:0:0:37:1287:-116.127,-11.1381,0	0/1:245:138,107:138:4867:107:3783:-266.918,0,-364.433	0/1:218:108,110:108:3810:110:3869:-282.781,0,-277.474	1/1:56:0,56:0:0:56:1992:-179.554,-16.8577,0	1/1:220:0,220:0:0:220:7809:-702.841,-66.2266,0	1/1:128:6,122:6:212:122:4323:-369.756,-19.107,0	0/1:112:53,58:53:1860:58:2033:-149.453,0,-133.903	0/1:8:3,5:3:99:5:180:-14.1438,0,-6.82834	1/1:22:1,21:1:36:21:752:-64.408,-3.02439,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	1/1:351:0,351:0:0:351:12506:-1125.38,-105.662,0	0/1:67:46,21:46:1627:21:756:-48.1982,0,-126.549	0/1:72:35,37:35:1229:37:1328:-98.1481,0,-89.2377	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:175:112,63:112:3959:63:2213:-146.754,0,-303.692	0/1:61:35,26:35:1243:26:932:-65.836,0,-93.811	0/1:81:47,34:47:1667:34:1204:-84.2824,0,-125.933	0/1:115:56,58:56:1995:58:2023:-147.663,0,-145.146	1/1:100:0,100:0:0:100:3575:-321.957,-30.103,0	0/1:67:41,26:41:1472:26:919:-62.8572,0,-112.607	0/1:71:47,24:47:1646:24:860:-56.3487,0,-126.863	0/1:166:96,70:96:3334:70:2482:-173.662,0,-250.306	1/1:115:0,115:0:0:115:4057:-365.319,-34.6185,0	1/1:207:0,207:0:0:207:7311:-658.05,-62.3132,0	1/1:107:0,107:0:0:107:3828:-344.717,-32.2102,0	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/1:93:56,37:56:1960:37:1313:-90.4739,0,-148.677	0/1:79:34,45:34:1203:45:1604:-120.867,0,-84.7937	0/1:21:16,5:16:568:5:180:-10.2304,0,-45.1302	0/1:169:91,78:91:3213:78:2775:-199.117,0,-238.518	0/1:28:14,14:14:488:14:488:-35.821,0,-35.8216	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	1/1:113:0,113:0:0:113:3975:-357.943,-34.0164,0	1/1:142:3,139:3:108:139:4909:-431.889,-32.6711,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:300:161,139:161:5728:139:4888:-349.769,0,-425.33	1/1:145:1,144:1:36:144:5099:-455.458,-40.0511,0	1/1:76:0,76:0:0:76:2694:-242.705,-22.8783,0	1/1:56:0,56:0:0:56:1965:-177.123,-16.8577,0	1/1:117:0,117:0:0:117:4143:-373.039,-35.2205,0	0/1:189:131,58:131:4638:58:2072:-129.856,0,-360.69	1/1:94:1,93:1:36:93:3264:-290.384,-24.6985,0	1/1:61:0,61:0:0:61:2173:-195.835,-18.3628,0	1/1:85:0,85:0:0:85:3004:-270.593,-25.5876,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:119:0,119:0:0:119:4246:-382.318,-35.8226,0	0/1:142:85,57:85:3012:57:2026:-139.865,0,-228.564	1/1:175:0,175:0:0:175:6199:-558.012,-52.6803,0	1/1:208:0,208:0:0:208:7409:-666.859,-62.6142,0	1/1:30:0,30:0:0:30:1061:-95.7994,-9.0309,0	1/1:160:1,159:1:36:159:5643:-504.395,-44.5665,0	0/1:30:10,20:10:345:20:695:-53.8405,0,-22.3499	1/1:110:0,110:0:0:110:3891:-350.386,-33.1133,0	0/1:120:73,47:73:2587:47:1671:-114.553,0,-196.953	1/1:244:1,242:1:36:242:8545:-765.457,-69.9118,0	1/1:85:0,84:0:0:84:2984:-268.432,-25.2865,0	1/1:134:0,134:0:0:134:4737:-426.489,-40.338,0	0/1:86:41,45:41:1468:45:1601:-118.491,0,-106.528	1/1:233:1,231:1:36:231:8203:-734.692,-66.5966,0	1/1:28:0,28:0:0:28:987:-89.143,-8.42884,0	0/1:144:71,73:71:2509:73:2584:-189.459,0,-182.713	1/1:132:0,132:0:0:132:4667:-420.194,-39.736,0	0/1:83:41,42:41:1455:42:1472:-107.786,0,-106.26	0/1:192:100,92:100:3516:92:3249:-234.833,0,-258.852	0/1:144:95,49:95:3347:49:1705:-110.382,0,-258.1	1/1:158:0,158:0:0:158:5610:-505.022,-47.5627,0	1/1:208:0,208:0:0:208:7389:-665.061,-62.6142,0
chr08	5687261	.	C	T	24166.5	PASS	AB=0.490934;ABP=5.13656;AC=36;AF=0.191489;AN=188;AO=1478;CIGAR=1X;DP=7913;DPB=7913;DPRA=1.08731;EPP=3212.45;EPPR=13967.7;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9723;MQMR=59.9768;NS=94;NUMALT=1;ODDS=1.67869;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52569;QR=227422;RO=6431;RPL=0;RPP=3212.45;RPPR=13967.7;RPR=1478;RUN=1;SAF=0;SAP=3212.45;SAR=1478;SRF=0;SRP=13967.7;SRR=6431;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1929:0:0:0,-16.5566,-173.885	0/0:59:59,0:59:2084:0:0:0,-17.7608,-187.828	0/1:241:126,115:126:4443:115:4099:-296.548,0,-327.497	0/0:165:165,0:165:5806:0:0:0,-49.6699,-522.66	0/1:69:42,26:42:1480:26:921:-62.5198,0,-112.808	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:106:106,0:106:3738:0:0:0,-31.9092,-336.622	0/0:101:101,0:101:3577:0:0:0,-30.404,-322.1	0/0:83:82,1:82:2895:1:36:0,-21.3872,-257.187	0/0:87:87,0:87:3066:0:0:0,-26.1896,-276.169	0/0:64:64,0:64:2263:0:0:0,-19.2659,-203.933	0/0:99:99,0:99:3466:0:0:0,-29.802,-312.158	0/0:104:104,0:104:3698:0:0:0,-31.3071,-332.795	0/0:72:72,0:72:2526:0:0:0,-21.6742,-227.593	0/0:84:84,0:84:2915:0:0:0,-25.2865,-262.586	0/0:74:74,0:74:2583:0:0:0,-22.2762,-232.719	0/0:43:43,0:43:1514:0:0:0,-12.9443,-136.552	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/0:35:35,0:35:1229:0:0:0,-10.536,-110.912	0/0:187:187,0:187:6627:0:0:0,-56.2926,-596.512	0/0:150:149,1:149:5227:1:36:0,-41.5562,-466.977	0/1:130:44,86:44:1572:86:3056:-236.134,0,-102.638	0/0:94:94,0:94:3338:0:0:0,-28.2968,-300.635	0/1:114:79,34:79:2806:34:1205:-74.5243,0,-218.552	0/0:92:92,0:92:3286:0:0:0,-27.6948,-295.959	0/1:160:79,81:79:2824:81:2881:-211.361,0,-206.223	0/1:247:122,125:122:4310:125:4453:-326.587,0,-313.724	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/0:220:219,0:219:7756:0:0:0,-65.9256,-697.716	0/0:90:87,3:87:3067:3:96:0,-18.1375,-267.304	0/1:98:47,51:47:1667:51:1807:-133.41,0,-120.804	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:20:19,1:19:684:1:36:0,-2.42232,-58.2921	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:161:161,0:161:5688:0:0:0,-48.4658,-512.043	0/1:103:54,49:54:1928:49:1737:-125.606,0,-142.791	0/1:58:31,27:31:1108:27:960:-69.2565,0,-82.5713	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:122:58,64:58:2051:64:2292:-169.816,0,-148.136	0/1:45:23,22:23:797:22:775:-56.5255,0,-58.4993	0/1:120:68,52:68:2427:52:1837:-129.484,0,-182.562	0/1:44:26,18:26:901:18:644:-45.0453,0,-68.1569	0/0:54:54,0:54:1854:0:0:0,-16.2556,-167.133	0/1:89:38,51:38:1355:51:1832:-138.369,0,-95.458	0/1:93:60,33:60:2102:33:1184:-78.8725,0,-161.451	0/1:111:69,42:69:2444:42:1478:-99.8978,0,-186.802	0/0:90:90,0:90:3194:0:0:0,-27.0927,-287.653	0/0:77:76,1:76:2678:1:36:0,-19.581,-237.665	0/0:126:126,0:126:4436:0:0:0,-37.9298,-399.417	0/1:11:5,6:5:176:6:208:-15.7478,0,-12.8737	0/1:138:66,72:66:2363:72:2553:-188.478,0,-171.386	0/1:55:19,36:19:672:36:1283:-99.1599,0,-44.2502	0/1:14:9,5:9:316:5:180:-12.3376,0,-24.5644	0/1:120:65,55:65:2283:55:1936:-138.39,0,-169.606	0/1:65:33,32:33:1176:32:1128:-82.2557,0,-86.4737	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.747	0/0:115:114,1:114:4008:1:36:0,-31.0202,-357.316	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:111:54,57:54:1928:57:2048:-151.177,0,-140.382	0/0:118:118,0:118:4212:0:0:0,-35.5215,-379.259	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.924	0/0:69:69,0:69:2421:0:0:0,-20.7711,-218.146	0/0:118:117,1:117:4166:1:36:0,-31.9233,-371.525	0/1:127:47,80:47:1680:80:2855:-218.957,0,-113.256	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.29	0/0:78:78,0:78:2780:0:0:0,-23.4803,-250.406	0/0:50:50,0:50:1743:0:0:0,-15.0515,-157.151	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8171	0/0:112:112,0:112:3956:0:0:0,-33.7154,-356.234	0/1:39:28,11:28:1000:11:396:-24.2426,0,-78.5752	0/0:145:144,1:144:5075:1:36:0,-40.0511,-453.3	0/0:118:116,2:116:4139:2:72:0,-28.6848,-365.858	0/0:143:143,0:143:5041:0:0:0,-43.0473,-453.84	0/0:85:82,3:82:2896:3:104:0,-15.8847,-251.173	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:89:88,0:88:3112:0:0:0,-26.4906,-279.947	0/1:95:45,50:45:1612:50:1765:-130.534,0,-116.772	0/0:147:147,0:147:5241:0:0:0,-44.2514,-471.828	0/0:70:70,0:70:2476:0:0:0,-21.0721,-223.092	0/0:85:85,0:85:3004:0:0:0,-25.5875,-270.591	0/1:56:33,23:33:1155:23:828:-57.9864,0,-87.3979	0/0:122:122,0:122:4362:0:0:0,-36.7257,-392.753	0/0:26:26,0:26:909:0:0:0,-7.82678,-82.1234	0/1:58:29,29:29:1032:29:1036:-76.0942,0,-75.7337	0/0:87:87,0:87:3056:0:0:0,-26.1896,-275.271	0/1:44:21,23:21:748:23:805:-59.5236,0,-54.4	0/1:91:44,47:44:1559:47:1679:-124.003,0,-113.207	0/1:64:26,38:26:906:38:1360:-103.435,0,-62.5875	0/0:143:142,1:142:5038:1:36:0,-39.449,-449.972	0/0:111:111,0:111:3896:0:0:0,-33.4143,-350.836
chr08	5688712	.	C	T	25450.9	PASS	AB=0.507789;ABP=4.60022;AC=35;AF=0.188172;AN=186;AO=1550;CIGAR=1X;DP=7865;DPB=7865;DPRA=1.15836;EPP=3368.79;EPPR=13683.3;GTI=0;LEN=1;MEANALT=1.04651;MQM=47.3516;MQMR=59.3351;NS=93;NUMALT=1;ODDS=3.82992;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55450;QR=225582;RO=6312;RPL=0;RPP=3368.79;RPPR=13683.3;RPR=1550;RUN=1;SAF=1550;SAP=3368.79;SAR=0;SRF=6312;SRP=13709.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1976:0:0:0,-16.5566,-177.797	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.821	0/1:115:50,65:50:1779:65:2340:-175.015,0,-125.756	0/0:162:162,0:162:5790:0:0:0,-48.7669,-521.059	0/1:55:27,28:27:964:28:1004:-72.9175,0,-70.4619	0/1:44:27,17:27:968:17:612:-41.8677,0,-72.9756	0/0:99:99,0:99:3555:0:0:0,-29.802,-320.104	0/0:128:128,0:128:4571:0:0:0,-38.5318,-410.212	0/0:124:124,0:124:4440:0:0:0,-37.3277,-399.702	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.238	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.473	0/0:110:110,0:110:3923:0:0:0,-33.1133,-353.215	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.746	0/0:64:64,0:64:2300:0:0:0,-19.2659,-206.729	0/0:79:78,0:78:2787:0:0:0,-23.4803,-250.595	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.498	0/0:45:45,0:45:1597:0:0:0,-13.5463,-143.98	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.409	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.0993	0/0:228:228,0:228:8155:0:0:0,-68.6348,-733.028	0/0:175:175,0:175:6257:0:0:0,-52.6802,-562.821	0/1:81:31,50:31:1099:50:1796:-135.648,0,-74.4104	0/0:97:97,0:97:3484:0:0:0,-29.1999,-312.515	0/1:97:61,36:61:2177:36:1288:-85.3502,0,-166.976	0/0:90:90,0:90:3198:0:0:0,-27.0927,-288.011	0/1:211:107,103:107:3809:103:3667:-262.844,0,-278.518	0/1:206:95,111:95:3394:111:3988:-291.352,0,-243.587	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.487	0/0:175:175,0:175:6258:0:0:0,-52.6802,-563.099	0/0:91:84,7:84:3012:7:244:0,-5.21654,-248.677	0/1:114:55,59:55:1963:59:2108:-154.071,0,-142.278	.:.:.:.:.:.:.:.	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1986	0/1:8:3,5:3:108:5:180:-14.076,0,-7.66693	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.267	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:177:177,0:177:6347:0:0:0,-53.2823,-571.019	0/1:118:74,44:74:2636:44:1546:-101.477,0,-201.938	0/1:41:27,14:27:972:14:500:-32.7645,0,-75.3744	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:139:68,71:68:2423:71:2556:-186.61,0,-176.108	0/1:23:11,12:11:396:12:428:-31.675,0,-29.0365	0/1:189:92,97:92:3273:97:3471:-253.313,0,-237.793	0/1:62:37,25:37:1319:25:900:-61.8226,0,-100.333	0/0:55:55,0:55:1952:0:0:0,-16.5566,-175.881	0/1:114:54,60:54:1936:60:2131:-156.017,0,-140.13	0/1:86:42,44:42:1508:44:1566:-113.863,0,-110.055	0/1:142:72,70:72:2584:70:2503:-180.881,0,-189.902	0/0:115:114,1:114:4071:1:36:0,-31.0516,-362.77	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.556	0/0:82:82,0:82:2931:0:0:0,-24.6845,-263.919	0/1:10:8,2:8:284:2:72:-3.76664,0,-22.8931	0/1:93:42,51:42:1490:51:1828:-135.624,0,-106.383	0/1:53:25,28:25:896:28:1008:-73.6857,0,-65.0011	0/1:6:4,2:4:144:2:72:-4.90031,0,-11.5074	0/1:85:37,48:37:1303:48:1710:-127.336,0,-91.9382	0/1:53:30,23:30:1072:23:828:-57.8237,0,-80.8355	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:12:5,7:5:176:7:248:-18.8675,0,-12.5713	0/0:106:105,1:105:3764:1:36:0,-28.3357,-334.983	0/0:92:91,1:91:3272:1:36:0,-24.1279,-290.849	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:116:59,56:59:2108:56:2004:-143.381,0,-155.114	0/0:156:156,0:156:5541:0:0:0,-46.9607,-498.59	0/0:58:58,0:58:2075:0:0:0,-17.4597,-186.967	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.099	0/0:136:134,2:134:4771:2:72:0,-34.1631,-422.354	0/1:135:43,92:43:1540:92:3281:-252.216,0,-97.8819	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5265	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.14	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.274	0/0:20:20,0:20:699:0:0:0,-6.0206,-63.1978	0/0:101:101,0:101:3594:0:0:0,-30.404,-323.614	0/1:122:71,51:71:2548:51:1813:-124.985,0,-192.822	0/0:141:140,1:140:5003:1:27:0,-39.7487,-447.439	0/0:152:152,0:152:5427:0:0:0,-45.7566,-488.195	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.182	0/0:108:108,0:108:3862:0:0:0,-32.5112,-347.592	0/1:25:10,15:10:360:15:540:-41.1455,0,-25.2186	0/0:91:89,2:89:3187:2:72:0,-20.6042,-280.201	0/1:93:49,44:49:1738:44:1580:-113.733,0,-128.669	0/0:178:178,0:178:6366:0:0:0,-53.5833,-572.515	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.738	0/0:84:84,0:84:3020:0:0:0,-25.2865,-271.792	0/1:69:31,38:31:1116:38:1368:-101.577,0,-79.946	0/0:136:133,3:133:4772:3:108:0,-31.159,-419.471	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:77:37,40:37:1319:40:1436:-105.616,0,-95.7891	0/0:69:69,0:69:2462:0:0:0,-20.7711,-221.707	0/1:45:27,18:27:972:18:644:-43.5136,0,-74.2516	0/1:94:49,45:49:1756:45:1607:-115.568,0,-129.984	0/1:84:23,61:23:828:61:2196:-170.147,0,-49.4712	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.12	0/0:114:114,0:114:4083:0:0:0,-34.3174,-367.609
chr08	5781013	.	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chr08	5787092	.	G	A	6023.78	PASS	AB=0.499009;ABP=3.02322;AC=35;AF=0.18617;AN=188;AO=761;CIGAR=1X;DP=4120;DPB=4120;DPRA=1.19749;EPP=1655.5;EPPR=7290.47;GTI=1;LEN=1;MEANALT=1.02632;MQM=27.1695;MQMR=59.8757;NS=94;NUMALT=1;ODDS=2.09505;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27192;QR=119951;RO=3356;RPL=0;RPP=1655.5;RPPR=7290.47;RPR=761;RUN=1;SAF=761;SAP=1655.5;SAR=0;SRF=3356;SRP=7290.47;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1192	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:27:11,16:11:392:16:576:-26.1158,0,-27.4922	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:30:20,10:20:712:10:356:-12.9406,0,-55.3754	0/1:26:14,12:14:504:12:432:-18.0447,0,-37.5503	0/0:54:54,0:54:1910:0:0:0,-16.2556,-172.174	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.711	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.222	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:45:45,0:45:1612:0:0:0,-13.5463,-144.942	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.37	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:44:44,0:44:1576:0:0:0,-13.2453,-141.641	0/0:38:37,1:37:1332:1:36:0,-9.06561,-117.809	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6381	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.688	0/1:45:10,35:10:360:35:1252:-78.6671,0,-19.198	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.369	0/1:52:37,15:37:1332:15:540:-20.0697,0,-104.529	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.2114	0/1:147:68,79:68:2432:79:2805:-162.649,0,-174.884	0/1:66:31,35:31:1116:35:1245:-56.6011,0,-80.8833	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:73:72,0:72:2576:0:0:0,-21.6742,-231.73	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:72:41,31:41:1464:31:1089:-53.3553,0,-110.382	1/1:2:0,2:0:0:2:68:-4.80852,-0.60206,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.536	0/1:49:32,17:32:1129:17:608:-21.274,0,-87.1659	0/1:32:10,22:10:360:22:788:-36.46,0,-23.1113	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:51:31,20:31:1116:20:720:-30.4526,0,-85.3988	0/1:40:14,26:14:500:26:932:-46.143,0,-33.295	0/1:72:38,33:38:1345:33:1184:-52.4241,0,-99.5457	0/1:57:31,26:31:1112:26:932:-47.672,0,-83.2293	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:44:27,17:27:968:17:612:-32.6583,0,-74.192	0/1:45:21,24:21:737:24:852:-40.8163,0,-53.1042	0/1:64:36,28:36:1288:28:1008:-51.3216,0,-96.9577	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:91:91,0:91:3241:0:0:0,-27.3937,-291.911	0/1:6:4,2:4:140:2:72:-3.55387,0,-11.1384	0/1:50:22,28:22:777:28:1004:-44.1899,0,-55.1955	0/1:12:8,4:8:273:4:144:-7.41642,0,-21.2878	0/1:7:4,3:4:144:3:108:-4.53867,0,-11.1349	0/1:43:25,18:25:877:18:640:-28.3262,0,-66.2927	0/1:61:40,21:40:1440:21:752:-35.1496,0,-111.535	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:4,2:4:144:2:72:-3.85725,0,-11.5074	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.602	0/0:92:91,1:91:3264:1:36:0,-24.8737,-291.159	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:78:29,49:29:1040:49:1745:-104.401,0,-70.434	0/0:126:125,1:125:4438:1:36:0,-35.9404,-397.578	0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.821	0/0:27:26,0:26:932:0:0:0,-7.82678,-83.8391	0/0:76:75,1:75:2692:1:36:0,-20.0572,-239.703	0/1:44:15,29:15:525:29:1040:-55.3329,0,-34.3327	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.096	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.49	0/1:11:6,5:6:216:5:180:-7.60691,0,-16.4792	0/0:132:132,0:132:4709:0:0:0,-39.736,-423.731	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.349	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:31:14,17:14:481:17:612:-25.9912,0,-34.2831	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.693	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:43:25,18:25:888:18:640:-30.4176,0,-67.2947	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.022	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.626	0/1:66:33,33:33:1184:33:1172:-51.6538,0,-87.0003	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.497	0/1:28:13,15:13:468:15:540:-26.0291,0,-34.0308	0/1:57:34,23:34:1208:23:824:-32.9775,0,-91.3756	0/1:51:9,42:9:324:42:1504:-88.4315,0,-14.1533	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123
chr08	5787128	.	AA	AG	5931.64	PASS	AB=0.491413;ABP=3.97986;AC=35;AF=0.18617;AN=188;AO=751;CIGAR=1M1X;DP=4152;DPB=4152;DPRA=1.19214;EPP=1633.79;EPPR=7377.33;GTI=1;LEN=1;MEANALT=1.05128;MQM=27.3875;MQMR=59.8342;NS=94;NUMALT=1;ODDS=1.55111;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26871;QR=119623;RO=3396;RPL=751;RPP=1633.79;RPPR=7377.33;RPR=0;RUN=1;SAF=751;SAP=1633.79;SAR=0;SRF=3396;SRP=7377.33;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9642	0/0:50:50,0:50:1740:0:0:0,-15.0515,-156.881	0/1:29:11,18:11:394:18:648:-29.6139,0,-27.0716	0/0:80:80,0:80:2830:0:0:0,-24.0824,-254.936	0/1:31:21,10:21:735:10:356:-12.6109,0,-57.1382	0/1:24:13,11:13:458:11:396:-16.5106,0,-34.008	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.535	0/0:45:45,0:45:1575:0:0:0,-13.5463,-142.037	0/0:85:85,0:85:2992:0:0:0,-25.5875,-269.312	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2959	0/0:36:36,0:36:1248:0:0:0,-10.8371,-112.616	0/0:32:32,0:32:1146:0:0:0,-9.63296,-103.45	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.421	0/0:43:43,0:43:1538:0:0:0,-12.9443,-138.673	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/0:27:27,0:27:944:0:0:0,-8.12781,-85.2721	0/0:43:43,0:43:1501:0:0:0,-12.9443,-134.889	0/0:38:37,1:37:1306:1:36:0,-9.06561,-115.466	0/0:24:24,0:24:831:0:0:0,-7.22472,-75.102	0/0:56:56,0:56:1977:0:0:0,-16.8577,-178.198	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.592	0/1:45:10,35:10:360:35:1252:-78.7795,0,-19.198	0/0:45:45,0:45:1552:0:0:0,-13.5463,-139.965	0/1:52:38,14:38:1328:14:504:-17.7674,0,-104.164	0/0:25:25,0:25:865:0:0:0,-7.52575,-78.0904	0/1:146:69,77:69:2385:77:2768:-158.449,0,-170.952	0/1:68:31,36:31:1103:36:1292:-58.7174,0,-79.0146	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7594	0/0:73:73,0:73:2593:0:0:0,-21.9752,-233.618	0/0:59:59,0:59:2053:0:0:0,-17.7608,-185.037	0/1:71:41,30:41:1459:30:1076:-53.3773,0,-110.232	1/1:2:0,2:0:0:2:72:-4.86154,-0.60206,0	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0176	0/0:2:2,0:2:61:0:0:0,-0.60206,-5.79323	0/0:3:3,0:3:97:0:0:0,-0.90309,-9.04999	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:113:112,1:112:3971:1:36:0,-30.4181,-353.964	0/1:50:33,17:33:1171:17:603:-20.8314,0,-90.6451	0/1:32:10,22:10:358:22:768:-35.9683,0,-22.9299	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:51:31,20:31:1091:20:716:-30.4021,0,-83.1446	0/1:40:14,26:14:489:26:923:-45.9344,0,-32.2988	0/1:74:40,34:40:1406:34:1224:-54.0637,0,-104.551	0/1:56:32,24:32:1105:24:864:-42.9826,0,-82.894	0/0:33:33,0:33:1139:0:0:0,-9.93399,-102.811	0/1:46:29,17:29:1027:17:612:-32.0562,0,-78.8947	0/1:46:22,24:22:782:24:852:-40.5152,0,-56.8547	0/1:62:35,27:35:1243:27:972:-49.5404,0,-93.5099	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4459	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.87	0/0:93:93,0:93:3297:0:0:0,-27.9958,-296.948	0/1:6:4,2:4:144:2:72:-3.55387,0,-11.5074	0/1:49:22,27:22:755:27:972:-42.3882,0,-53.5105	0/1:12:8,4:8:266:4:144:-7.41642,0,-20.6504	0/1:7:4,3:4:144:3:108:-4.53867,0,-11.1349	0/1:43:25,18:25:852:18:648:-28.4273,0,-64.0357	0/1:62:41,21:41:1445:21:756:-34.9367,0,-111.68	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:4,2:4:133:2:72:-3.85725,0,-10.4914	0/0:51:51,0:51:1785:0:0:0,-15.3525,-160.927	0/0:91:90,1:90:3171:1:36:0,-24.5726,-282.793	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0832	0/1:78:29,49:29:992:49:1740:-104.664,0,-66.1046	0/0:128:128,0:128:4547:0:0:0,-38.5318,-407.51	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2646	0/0:77:76,1:76:2660:1:36:0,-20.3582,-236.824	0/1:43:15,24:15:538:24:860:-47.6632,0,-36.7986	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7775	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.2807	0/0:86:86,0:86:3032:0:0:0,-25.8886,-273.109	0/0:14:14,0:14:498:0:0:0,-4.21442,-45.1553	0/0:46:46,0:46:1624:0:0:0,-13.8474,-146.445	0/1:12:7,5:7:250:5:180:-7.30588,0,-19.2333	0/0:133:133,0:133:4681:0:0:0,-40.037,-421.013	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.178	0/0:37:37,0:37:1305:0:0:0,-11.1381,-117.75	0/0:24:24,0:24:838:0:0:0,-7.22472,-75.7358	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:26:26,0:26:903:0:0:0,-7.82678,-81.5811	0/1:31:14,17:14:492:17:612:-25.9912,0,-35.2801	0/0:73:73,0:73:2572:0:0:0,-21.9752,-231.409	0/0:67:66,1:66:2313:1:36:0,-16.5707,-204.829	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7675	0/1:43:25,18:25:883:18:644:-30.5825,0,-66.8429	0/0:90:90,0:90:3195:0:0:0,-27.0927,-287.772	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.454	0/1:64:32,32:32:1150:32:1148:-51.1989,0,-84.5442	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.145	0/1:28:13,15:13:455:15:536:-26.007,0,-32.8528	0/1:56:33,23:33:1186:23:811:-33.7749,0,-89.6991	0/1:51:9,42:9:295:42:1490:-87.7969,0,-11.5158	0/0:56:56,0:56:1964:0:0:0,-16.8577,-177.022	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.685
chr08	5787134	.	G	A	6029.21	PASS	AB=0.503018;ABP=3.12827;AC=35;AF=0.18617;AN=188;AO=757;CIGAR=1X;DP=4042;DPB=4042;DPRA=1.1131;EPP=1646.81;EPPR=7129.78;GTI=1;LEN=1;MEANALT=1.05128;MQM=27.2682;MQMR=59.9302;NS=94;NUMALT=1;ODDS=2.52937;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27058;QR=116469;RO=3282;RPL=757;RPP=1646.81;RPPR=7129.78;RPR=0;RUN=1;SAF=757;SAP=1646.81;SAR=0;SRF=3282;SRP=7129.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/1:29:11,18:11:381:18:644:-29.5802,0,-25.8908	0/0:80:80,0:80:2838:0:0:0,-24.0824,-255.659	0/1:30:20,10:20:712:10:356:-12.9119,0,-55.3754	0/1:24:13,11:13:464:11:392:-16.4768,0,-34.8712	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/0:44:44,0:44:1538:0:0:0,-13.2453,-138.708	0/0:85:85,0:85:3027:0:0:0,-25.5875,-272.464	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.916	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7683	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/0:42:42,0:42:1471:0:0:0,-12.6433,-132.625	0/0:40:40,0:40:1402:0:0:0,-12.0412,-126.476	0/0:24:24,0:24:846:0:0:0,-7.22472,-76.4578	0/0:42:42,0:42:1471:0:0:0,-12.6433,-132.684	0/0:38:37,1:37:1319:1:36:0,-9.06561,-116.638	0/0:22:22,0:22:763:0:0:0,-6.62266,-68.9885	0/0:55:55,0:55:1964:0:0:0,-16.5566,-176.966	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:45:10,35:10:360:35:1219:-77.5412,0,-19.198	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/1:52:38,14:38:1364:14:504:-17.7674,0,-107.407	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3667	0/1:146:69,77:69:2431:77:2760:-158.438,0,-175.094	0/1:66:31,35:31:1104:35:1241:-56.5508,0,-79.8023	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/1:72:41,31:41:1472:31:1108:-54.1518,0,-111.102	1/1:2:0,2:0:0:2:72:-4.86154,-0.60206,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:106:106,0:106:3738:0:0:0,-31.9092,-336.622	0/1:47:31,16:31:1103:16:576:-19.6225,0,-85.4314	0/1:32:10,22:10:347:22:788:-36.4919,0,-21.9307	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:50:30,20:30:1072:20:716:-30.7031,0,-81.7406	0/1:39:13,26:13:449:26:923:-46.2921,0,-28.9973	0/1:74:41,33:41:1433:33:1184:-50.8206,0,-106.915	0/1:55:29,26:29:1018:26:920:-48.0102,0,-75.3738	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:44:28,16:28:985:16:572:-29.8537,0,-75.7162	0/1:46:22,24:22:784:24:864:-40.9395,0,-57.035	0/1:62:35,27:35:1260:27:972:-49.3846,0,-95.0416	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:90:90,0:90:3169:0:0:0,-27.0927,-285.434	0/1:5:3,2:3:104:2:72:-3.8549,0,-8.19766	0/1:48:21,27:21:743:27:959:-42.5206,0,-52.7439	0/1:11:7,4:7:243:4:144:-7.71745,0,-18.8962	0/1:7:4,3:4:129:3:108:-4.53867,0,-9.74898	0/1:41:23,18:23:816:18:644:-28.9788,0,-61.4113	0/1:60:39,21:39:1396:21:756:-35.5387,0,-107.877	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:4,2:4:144:2:72:-3.85725,0,-11.5074	0/0:50:48,1:48:1711:1:36:0,-11.5124,-150.676	0/0:92:91,1:91:3198:1:36:0,-24.8737,-285.223	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:78:29,49:29:1040:49:1755:-105.495,0,-70.434	0/0:124:124,0:124:4389:0:0:0,-37.3277,-393.629	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.889	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:78:75,1:75:2678:1:36:0,-20.3652,-238.391	0/1:43:14,29:14:504:29:1044:-55.7219,0,-32.7538	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8573	0/0:85:85,0:85:3000:0:0:0,-25.5875,-270.232	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.49	0/1:11:6,5:6:216:5:180:-7.60691,0,-16.4792	0/0:127:127,0:127:4489:0:0:0,-38.2308,-404.168	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.75	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:30:13,17:13:456:17:612:-26.2923,0,-32.3423	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:65:65,0:65:2289:0:0:0,-19.5669,-206.27	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:42:24,18:24:843:18:644:-30.8444,0,-63.5447	0/0:86:86,0:86:3052:0:0:0,-25.8886,-274.908	0/0:32:31,1:31:1089:1:36:0,-6.03569,-94.7167	0/1:66:33,33:33:1167:33:1184:-52.5609,0,-85.4684	0/0:31:31,0:31:1074:0:0:0,-9.33193,-96.9637	0/1:27:12,15:12:432:15:536:-26.3081,0,-31.0934	0/1:52:28,24:28:995:24:851:-37.6766,0,-74.2096	0/1:51:9,42:9:324:42:1506:-88.6046,0,-14.1533	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346
chr08	5787520	.	AGGAATTG	AGGGATTA,AGGGATTG	98378.9	PASS	AB=0.706696,0.288856;ABP=512.886,531.194;AC=153,32;AF=0.822581,0.172043;AN=186;AO=4356,406;CIGAR=3M1X3M1X,3M1X4M;DP=4812;DPB=4812;DPRA=17.4239,0.85772;EPP=9461.94,867.342;EPPR=5.18177;GTI=7;LEN=8,1;MEANALT=1.84783,2.24324;MQM=41.8333,41.2512;MQMR=60;NS=93;NUMALT=2;ODDS=0.334235;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=153299,14318;QR=35;RO=1;RPL=4356,2;RPP=9461.94,867.342;RPPR=5.18177;RPR=0,404;RUN=1,1;SAF=0,0;SAP=9461.94,884.628;SAR=4356,406;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,32,0:0:0:32,0:1125,0:-97.9047,-9.63296,0,-97.9047,-9.63296,-97.9047	1/1:34:0,34,0:0:0:34,0:1207,0:-105.806,-10.235,0,-105.806,-10.235,-105.806	1/2:48:0,38,10:0:0:38,10:1339,360:-134.719,-28.771,-17.3319,-106.296,0,-103.286	1/1:151:0,148,0:0:0:148,0:5169,0:-451.004,-44.5524,0,-451.004,-44.5524,-451.004	1/1:14:0,14,0:0:0:14,0:504,0:-42.4842,-4.21442,0,-42.4842,-4.21442,-42.4842	1/2:16:0,12,4:0:0:12,4:414,135:-43.7454,-10.9367,-7.3243,-33.1391,0,-31.935	1/1:96:0,93,0:0:0:93,0:3247,0:-282.672,-27.9958,0,-282.672,-27.9958,-282.672	1/1:60:0,59,0:0:0:59,0:2061,0:-180.63,-17.7608,0,-180.63,-17.7608,-180.63	1/1:63:0,63,0:0:0:63,0:2194,0:-190.555,-18.9649,0,-190.555,-18.9649,-190.555	1/1:52:0,52,0:0:0:52,0:1811,0:-158.07,-15.6536,0,-158.07,-15.6536,-158.07	1/1:56:0,56,0:0:0:56,0:1973,0:-170.204,-16.8577,0,-170.204,-16.8577,-170.204	1/1:90:0,87,0:0:0:87,0:3060,0:-267.177,-26.1896,0,-267.177,-26.1896,-267.177	1/1:64:0,63,0:0:0:63,0:2216,0:-194.586,-18.9649,0,-194.586,-18.9649,-194.586	1/1:100:0,99,0:0:0:99,0:3501,0:-306.169,-29.802,0,-306.169,-29.802,-306.169	1/1:46:0,44,0:0:0:44,0:1563,0:-135.62,-13.2453,0,-135.62,-13.2453,-135.62	1/1:63:0,62,1:0:0:62,1:2164,36:-189.699,-18.6639,0,-186.868,-15.4842,-186.567	1/1:25:0,25,0:0:0:25,0:869,0:-76.3733,-7.52575,0,-76.3733,-7.52575,-76.3733	1/1:28:0,28,0:0:0:28,0:984,0:-86.8629,-8.42884,0,-86.8629,-8.42884,-86.8629	1/1:28:0,28,0:0:0:28,0:969,0:-85.5402,-8.42884,0,-85.5402,-8.42884,-85.5402	1/1:97:0,97,0:0:0:97,0:3414,0:-295.404,-29.1999,0,-295.404,-29.1999,-295.404	1/1:108:0,105,0:0:0:105,0:3710,0:-325.021,-31.6082,0,-325.021,-31.6082,-325.021	1/2:48:0,25,23:0:0:25,23:874,828:-134.864,-65.4748,-57.949,-69.7339,0,-62.8102	1/1:109:0,108,0:0:0:108,0:3840,0:-333.622,-32.5112,0,-333.622,-32.5112,-333.622	1/2:30:0,23,7:0:0:23,7:808,248:-83.7654,-19.8655,-12.9419,-64.2429,0,-62.1357	1/1:52:0,51,0:0:0:51,0:1804,0:-158.344,-15.3525,0,-158.344,-15.3525,-158.344	1/2:112:0,86,26:0:0:86,26:3040,918:-315.547,-72.3513,-46.4627,-243.538,0,-235.711	1/2:87:0,69,17:0:0:69,17:2435,588:-238.548,-45.98,-25.2089,-192.596,0,-187.478	0/1:10:1,9,0:1:35:9,0:312,0:-22.7414,0,-0.488329,-23.0424,-3.1976,-25.8937	1/1:122:0,122,0:0:0:122,0:4286,0:-379.49,-36.7257,0,-379.49,-36.7257,-379.49	1/1:64:0,61,2:0:0:61,2:2165,72:-189.96,-18.3628,0,-184.297,-12.7072,-183.695	1/2:38:0,25,12:0:0:25,12:880,419:-102.545,-33.1627,-25.637,-69.4389,0,-65.8266	1/1:1:0,1,0:0:0:1,0:35,0:-3.42101,-0.30103,0,-3.42101,-0.30103,-3.42101	1/1:12:0,12,0:0:0:12,0:421,0:-37.2644,-3.61236,0,-37.2644,-3.61236,-37.2644	1/1:2:0,2,0:0:0:2,0:72,0:-6.65513,-0.60206,0,-6.65513,-0.60206,-6.65513	1/1:7:0,7,0:0:0:7,0:251,0:-22.3426,-2.10721,0,-22.3426,-2.10721,-22.3426	1/1:8:0,7,0:0:0:7,0:246,0:-19.6051,-2.10721,0,-19.6051,-2.10721,-19.6051	1/1:120:0,120,0:0:0:120,0:4252,0:-376.241,-36.1236,0,-376.241,-36.1236,-376.241	1/2:64:0,53,11:0:0:53,11:1883,392:-180.964,-31.6212,-15.6666,-149.691,0,-146.38	1/2:29:0,19,10:0:0:19,10:655,360:-80.4355,-28.664,-22.9445,-52.1155,0,-49.1052	.:.:.:.:.:.:.:.	1/2:62:0,48,13:0:0:48,13:1694,447:-168.713,-35.2257,-20.7762,-133.519,0,-129.605	1/2:18:0,14,4:0:0:14,4:489,144:-50.4295,-11.6745,-7.46003,-39.1015,0,-37.8974	1/2:71:0,57,13:0:0:57,13:2007,455:-194.578,-35.8077,-18.6489,-158.785,0,-154.872	1/2:27:0,13,14:0:0:13,14:458,495:-75.1252,-39.4334,-35.52,-36.0328,0,-31.8183	1/1:36:0,36,0:0:0:36,0:1250,0:-109.099,-10.8371,0,-109.099,-10.8371,-109.099	1/2:72:0,41,31:0:0:41,31:1450,1090:-200.969,-85.7233,-73.3811,-115.588,0,-106.256	1/2:40:0,32,7:0:0:32,7:1142,248:-108.607,-19.592,-9.959,-89.0844,0,-86.9772	1/2:33:0,20,13:0:0:20,13:702,468:-92.2232,-37.2587,-31.2381,-55.3094,0,-51.3961	1/1:41:0,41,0:0:0:41,0:1448,0:-126.712,-12.3422,0,-126.712,-12.3422,-126.712	1/1:69:0,68,0:0:0:68,0:2408,0:-210.24,-20.47,0,-210.24,-20.47,-210.24	1/1:83:0,82,1:0:0:82,1:2884,36:-255.204,-24.6845,0,-252.372,-21.5048,-252.071	1/1:4:0,4,0:0:0:4,0:143,0:-12.8577,-1.20412,0,-12.8577,-1.20412,-12.8577	1/2:39:0,27,12:0:0:27,12:948,428:-109.113,-34.0255,-25.8977,-75.4319,0,-71.8195	1/2:44:0,33,11:0:0:33,11:1168,392:-124.053,-31.1937,-21.2597,-93.2051,0,-89.8938	1/2:7:0,4,3:0:0:4,3:143,108:-20.175,-8.84286,-7.63874,-11.6803,0,-10.7772	1/2:36:0,23,12:0:0:23,12:819,424:-98.4791,-33.4963,-26.5726,-65.0977,0,-61.4853	1/2:28:0,23,5:0:0:23,5:800,176:-77.1773,-14.2409,-7.31726,-63.2778,0,-61.7726	1/1:5:0,5,0:0:0:5,0:174,0:-15.7816,-1.50515,0,-15.7816,-1.50515,-15.7816	2/2:3:0,0,3:0:0:0,3:0,104: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chr08	5787535	.	G	C	90514.1	PASS	AB=0.705194;ABP=502.943;AC=153;AF=0.822581;AN=186;AO=4320;CIGAR=1X;DP=4735;DPB=4735;DPRA=12.856;EPP=9383.77;EPPR=808.994;GTI=7;LEN=1;MEANALT=1.01087;MQM=41.7632;MQMR=41.3188;NS=93;NUMALT=1;ODDS=2.11432;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154414;QR=14834;RO=414;RPL=4320;RPP=9383.77;RPPR=808.994;RPR=0;RUN=1;SAF=0;SAP=9383.77;SAR=4320;SRF=0;SRP=902;SRR=414;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1292:-109.684,-10.8371,0	1/1:33:0,33:0:0:33:1188:-103.976,-9.93399,0	0/1:49:11,38:11:392:38:1356:-104.194,0,-19.8614	1/1:147:0,147:0:0:147:5244:-455.39,-44.2514,0	1/1:14:0,14:0:0:14:504:-42.4842,-4.21442,0	0/1:16:4,12:4:135:12:432:-33.3629,0,-7.3243	1/1:95:0,95:0:0:95:3365:-292.773,-28.5979,0	1/1:59:0,59:0:0:59:2116:-184.438,-17.7608,0	1/1:59:0,59:0:0:59:2124:-184.017,-17.7608,0	1/1:51:0,51:0:0:51:1813:-157.603,-15.3525,0	1/1:54:0,54:0:0:54:1940:-167.35,-16.2556,0	1/1:87:0,87:0:0:87:3120:-271.33,-26.1896,0	1/1:63:0,63:0:0:63:2268:-198.731,-18.9649,0	1/1:100:0,100:0:0:100:3566:-310.82,-30.103,0	1/1:45:0,45:0:0:45:1616:-139.7,-13.5464,0	1/1:63:1,62:1:36:62:2205:-189.678,-15.4842,0	1/1:24:0,24:0:0:24:856:-74.9812,-7.22472,0	1/1:28:0,28:0:0:28:1008:-88.694,-8.42884,0	1/1:27:0,27:0:0:27:968:-85.1549,-8.12781,0	1/1:94:0,94:0:0:94:3345:-288.704,-28.2968,0	1/1:107:0,107:0:0:107:3821:-333.165,-32.2102,0	0/1:50:25,25:25:896:25:896:-64.0465,0,-63.3119	1/1:108:0,108:0:0:108:3853:-334.234,-32.5112,0	0/1:29:7,22:7:248:22:777:-59.6752,0,-13.2429	1/1:52:0,52:0:0:52:1857:-162.777,-15.6536,0	0/1:108:25,83:25:900:83:2980:-231.172,0,-46.1525	0/1:87:18,69:18:644:69:2464:-189.768,0,-29.7837	0/1:10:1,9:1:36:9:309:-22.4219,0,-0.587975	1/1:121:0,121:0:0:121:4340:-383.709,-36.4246,0	1/1:64:2,62:2:72:62:2220:-188.371,-12.6526,0	0/1:38:11,27:11:396:27:949:-71.4869,0,-23.4078	1/1:1:0,1:0:0:1:36:-3.5027,-0.30103,0	1/1:12:0,12:0:0:12:417:-36.8956,-3.61236,0	1/1:2:0,2:0:0:2:72:-6.65513,-0.60206,0	1/1:7:0,7:0:0:7:252:-22.4173,-2.10721,0	1/1:8:0,8:0:0:8:284:-23.2439,-2.40824,0	1/1:114:0,114:0:0:114:4089:-361.482,-34.3174,0	0/1:63:11,52:11:392:52:1868:-145.136,0,-15.9677	0/1:30:11,19:11:396:19:669:-49.8488,0,-25.7761	.:.:.:.:.:.:.:.	0/1:61:13,48:13:468:48:1720:-131.324,0,-22.7094	0/1:17:4,13:4:144:13:468:-36.231,0,-7.76106	0/1:71:13,58:13:459:58:2065:-159.431,0,-18.9751	0/1:27:14,13:14:504:13:468:-32.5775,0,-36.2436	1/1:35:0,35:0:0:35:1256:-109.269,-10.5361,0	0/1:72:31,41:31:1116:41:1457:-106.846,0,-75.1714	0/1:40:7,33:7:252:33:1188:-90.5639,0,-10.2352	0/1:36:15,20:15:540:20:712:-51.1925,0,-36.762	1/1:39:0,39:0:0:39:1400:-122.347,-11.7402,0	1/1:69:0,69:0:0:69:2480:-215.939,-20.7711,0	1/1:83:1,82:1:36:82:2936:-256.183,-21.5048,0	1/1:3:0,3:0:0:3:108:-9.74595,-0.90309,0	0/1:38:12,26:12:428:26:936:-70.8028,0,-26.1987	0/1:44:11,33:11:396:33:1150:-88.1873,0,-21.5616	0/1:7:3,4:3:104:4:140:-10.5345,0,-7.32872	0/1:36:12,24:12:432:24:864:-65.026,0,-27.1025	0/1:27:5,22:5:180:22:792:-61.2358,0,-7.92388	1/1:4:0,4:0:0:4:144:-13.0837,-1.20412,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.8786	1/1:86:0,86:0:0:86:3065:-266.446,-25.8886,0	1/1:117:3,114:3:108:114:4058:-343.41,-25.454,0	1/1:4:0,4:0:0:4:140:-12.5713,-1.20412,0	0/1:74:26,48:26:928:48:1713:-129.288,0,-57.7273	1/1:67:0,67:0:0:67:2393:-208.692,-20.169,0	1/1:47:0,47:0:0:47:1662:-145.65,-14.1484,0	1/1:45:0,45:0:0:45:1593:-138.532,-13.5464,0	1/1:68:0,68:0:0:68:2428:-211.322,-20.47,0	0/1:60:24,36:24:856:36:1288:-94.5968,0,-56.988	1/1:37:0,37:0:0:37:1328:-116.608,-11.1381,0	1/1:12:0,12:0:0:12:428:-37.8743,-3.61236,0	1/1:36:0,36:0:0:36:1296:-114.181,-10.8371,0	1/1:13:0,13:0:0:13:468:-39.5461,-3.91339,0	1/1:91:0,91:0:0:91:3230:-283.15,-27.3937,0	0/1:46:16,30:16:572:30:1072:-80.5047,0,-36.3217	1/1:107:0,107:0:0:107:3836:-335.578,-32.2102,0	1/1:100:0,100:0:0:100:3588:-312.39,-30.103,0	1/1:46:0,46:0:0:46:1641:-143.02,-13.8474,0	1/1:48:0,48:0:0:48:1724:-151.139,-14.4494,0	0/1:14:6,8:6:216:8:288:-21.3553,0,-14.9294	1/1:36:0,36:0:0:36:1292:-112.879,-10.8371,0	1/1:14:1,13:1:36:13:468:-37.1003,-0.733725,0	1/1:115:0,115:0:0:115:4105:-357.267,-34.6185,0	1/1:48:0,48:0:0:48:1724:-150.403,-14.4494,0	1/1:70:0,70:0:0:70:2512:-218.92,-21.0721,0	0/1:27:10,17:10:360:17:612:-44.2536,0,-23.6066	1/1:71:0,71:0:0:71:2518:-217.332,-21.3731,0	1/1:14:0,14:0:0:14:500:-44.1004,-4.21442,0	0/1:49:15,34:15:536:34:1224:-92.3568,0,-31.096	1/1:49:0,49:0:0:49:1764:-152.889,-14.7505,0	0/1:31:8,23:8:288:23:809:-61.9414,0,-16.0771	0/1:81:17,64:17:612:64:2296:-176.747,0,-28.5449	0/1:29:16,13:16:576:13:468:-32.3423,0,-41.0632	1/1:63:0,63:0:0:63:2260:-195.85,-18.9649,0	1/1:52:0,52:0:0:52:1860:-162.501,-15.6536,0
chr08	5790870	.	G	A	347687	PASS	AB=0.475193;ABP=45.8886;AC=152;AF=0.808511;AN=188;AO=16470;CIGAR=1X;DP=20743;DPB=20743;DPRA=0;EPP=35758.5;EPPR=9277.37;GTI=0;LEN=1;MEANALT=1.02128;MQM=30.9529;MQMR=45.4685;NS=94;NUMALT=1;ODDS=1.57625;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=582613;QR=151430;RO=4271;RPL=8640;RPP=89.5132;RPPR=200.344;RPR=7830;RUN=1;SAF=8641;SAP=89.9409;SAR=7829;SRF=2447;SRP=200.344;SRR=1824;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:124:0,124:0:0:124:4404:-322.665,-37.3277,0	1/1:194:1,193:1:36:193:6860:-532.007,-54.8066,0	0/1:331:165,166:165:5859:166:5862:-346.197,0,-406.899	1/1:524:0,524:0:0:524:18514:-1359.22,-157.74,0	0/1:178:88,90:88:3148:90:3195:-181.68,0,-221.274	0/1:88:38,50:38:1348:50:1792:-92.0814,0,-84.1543	1/1:217:0,217:0:0:217:7720:-542.124,-65.3235,0	1/1:288:0,288:0:0:288:10125:-788.1,-86.6966,0	1/1:300:0,300:0:0:300:10637:-807.817,-90.309,0	1/1:287:1,286:1:36:286:10121:-724.955,-82.837,0	1/1:133:1,132:1:36:132:4676:-320.232,-36.6494,0	1/1:236:0,236:0:0:236:8377:-595.446,-71.0431,0	1/1:170:0,170:0:0:170:5997:-425.736,-51.1751,0	1/1:234:1,233:1:36:233:8221:-552.876,-67.142,0	1/1:135:0,135:0:0:135:4785:-330.84,-40.6391,0	1/1:189:2,187:2:72:187:6586:-457.835,-50.0693,0	1/1:97:0,97:0:0:97:3411:-247.615,-29.1999,0	1/1:73:0,73:0:0:73:2583:-188.256,-21.9752,0	1/1:72:0,72:0:0:72:2532:-177.014,-21.6742,0	1/1:504:1,503:1:36:503:17819:-1286.65,-148.332,0	1/1:531:1,530:1:36:530:18680:-1369.83,-156.256,0	0/1:195:139,56:139:4945:56:2004:-85.8659,0,-377.12	1/1:323:0,323:0:0:323:11490:-821.032,-97.2327,0	0/1:146:63,83:63:2228:83:2924:-156.817,0,-145.852	1/1:193:4,189:4:144:189:6703:-469.576,-44.8089,0	0/1:595:326,269:326:11540:269:9473:-532.709,0,-831.323	0/1:512:263,249:263:9310:249:8827:-489.356,0,-651.186	1/1:70:0,70:0:0:70:2446:-173.337,-21.0721,0	1/1:699:3,696:3:104:696:24602:-1797.72,-201.353,0	1/1:288:21,267:21:747:267:9408:-642.248,-23.07,0	0/1:265:130,135:130:4612:135:4722:-265.871,0,-320.091	0/1:12:5,7:5:180:7:243:-15.2108,0,-12.3702	1/1:26:0,26:0:0:26:920:-69.9674,-7.82678,0	0/1:8:3,5:3:108:5:180:-9.78656,0,-7.65741	1/1:11:0,11:0:0:11:392:-31.8145,-3.31133,0	1/1:22:0,22:0:0:22:776:-63.714,-6.62266,0	1/1:391:0,391:0:0:391:13828:-996.45,-117.703,0	0/1:310:170,140:170:6023:140:4967:-282.51,0,-435.396	0/1:123:64,59:64:2278:59:2085:-117.322,0,-154.735	1/1:8:0,8:0:0:8:284:-19.9376,-2.40824,0	0/1:417:215,202:215:7556:202:7168:-372.593,0,-518.159	0/1:62:20,42:20:677:42:1474:-85.4457,0,-39.8576	0/1:443:222,221:222:7865:221:7836:-427.983,0,-545.212	0/1:156:74,82:74:2620:82:2876:-158.132,0,-182.987	1/1:122:1,121:1:36:121:4260:-296.143,-33.3381,0	0/1:266:146,120:146:5210:120:4244:-236.041,0,-377.72	0/1:254:132,122:132:4675:122:4283:-247.809,0,-322.039	0/1:387:211,176:211:7503:176:6246:-342.126,0,-543.421	1/1:163:0,163:0:0:163:5735:-416.58,-49.0679,0	1/1:355:0,355:0:0:355:12538:-928.831,-106.866,0	1/1:172:1,171:1:36:171:6017:-409.788,-48.1907,0	0/1:23:12,11:12:432:11:358:-21.8195,0,-32.0177	0/1:216:94,122:94:3329:122:4284:-259.292,0,-222.84	0/1:199:89,110:89:3162:110:3923:-220.048,0,-217.465	0/1:27:13,14:13:464:14:487:-31.9254,0,-32.7913	0/1:324:176,148:176:6247:148:5225:-295.815,0,-437.218	0/1:186:86,100:86:3054:100:3549:-213.553,0,-211.767	1/1:25:0,25:0:0:25:865:-66.4405,-7.52575,0	0/1:24:13,11:13:460:11:396:-23.8064,0,-34.214	1/1:167:0,167:0:0:167:5927:-414.387,-50.272,0	1/1:202:2,199:2:68:199:7058:-472.636,-54.5977,0	1/1:15:0,15:0:0:15:536:-39.9759,-4.51545,0	0/1:360:166,194:166:5908:194:6877:-398.516,0,-408.023	1/1:378:2,376:2:72:376:13342:-958.765,-107.891,0	1/1:156:0,156:0:0:156:5555:-387.458,-46.9607,0	1/1:225:3,222:3:99:222:7890:-560.134,-59.0018,0	1/1:499:2,497:2:72:497:17755:-1382.39,-143.459,0	0/1:337:230,107:230:8187:107:3799:-176.268,0,-617.677	1/1:98:0,98:0:0:98:3458:-234.201,-29.5009,0	1/1:142:0,142:0:0:142:5031:-385.256,-42.7463,0	1/1:67:0,67:0:0:67:2357:-172.305,-20.169,0	1/1:57:0,57:0:0:57:2036:-144.643,-17.1587,0	1/1:197:2,195:2:72:195:6857:-490.496,-52.4855,0	0/1:227:133,94:133:4697:94:3270:-176.178,0,-326.813	1/1:465:2,463:2:68:463:16278:-1144.96,-133.808,0	1/1:358:2,356:2:72:356:12622:-919.159,-100.949,0	1/1:282:2,280:2:72:280:9882:-704.575,-78.5046,0	1/1:218:3,215:3:108:215:7611:-543.384,-55.5637,0	0/1:46:25,21:25:896:21:752:-47.7602,0,-64.1007	1/1:265:0,265:0:0:265:9366:-682.628,-79.773,0	0/1:277:143,134:143:5074:134:4736:-274.734,0,-347.754	1/1:565:1,563:1:36:563:19889:-1447.49,-166.681,0	1/1:104:0,104:0:0:104:3683:-260.984,-31.3071,0	1/1:169:2,167:2:68:167:5903:-389.002,-44.7083,0	0/1:125:70,55:70:2488:55:1942:-97.2066,0,-176.427	1/1:242:0,242:0:0:242:8603:-604.692,-72.8493,0	1/1:53:0,53:0:0:53:1871:-137.564,-15.9546,0	0/1:157:63,94:63:2199:94:3338:-192.257,0,-136.929	1/1:185:0,185:0:0:185:6540:-477.45,-55.6906,0	0/1:110:53,57:53:1870:57:2040:-115.429,0,-123.581	0/1:233:106,127:106:3749:127:4462:-232.087,0,-244.326	0/1:403:264,139:264:9367:139:4931:-270.367,0,-705.65	1/1:219:0,219:0:0:219:7767:-557.439,-65.9256,0	1/1:217:0,217:0:0:217:7714:-550.736,-65.3235,0
chr08	5790979	.	C	A	112728	PASS	AB=0.456335;ABP=43.4029;AC=151;AF=0.803191;AN=188;AO=5206;CIGAR=1X;DP=6553;DPB=6553;DPRA=23.4767;EPP=11307.7;EPPR=2904.12;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9312;MQMR=59.9695;NS=94;NUMALT=1;ODDS=1.33796;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186000;QR=46964;RO=1344;RPL=5198;RPP=11238.3;RPPR=2904.12;RPR=8;RUN=1;SAF=5198;SAP=11238.3;SAR=8;SRF=1342;SRP=2904.12;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1604:-144.647,-13.5464,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:87:39,48:39:1378:48:1728:-129.615,0,-98.1276	1/1:110:0,110:0:0:110:3923:-353.264,-33.1133,0	0/1:37:21,16:21:743:16:576:-41.0369,0,-56.0552	0/1:23:7,16:7:248:16:572:-44.8897,0,-15.7405	1/1:56:0,56:0:0:56:1965:-177.117,-16.8577,0	1/1:84:1,83:1:36:83:2969:-263.843,-21.6882,0	1/1:89:0,89:0:0:89:3188:-287.141,-26.7917,0	1/1:87:0,87:0:0:87:3112:-280.305,-26.1896,0	1/1:99:1,98:1:36:98:3490:-310.713,-26.2037,0	1/1:104:0,104:0:0:104:3712:-334.252,-31.3071,0	1/1:98:0,98:0:0:98:3501:-315.214,-29.5009,0	1/1:104:1,102:1:36:102:3660:-326.015,-27.7527,0	1/1:74:0,74:0:0:74:2627:-236.678,-22.2762,0	1/1:72:0,72:0:0:72:2544:-229.135,-21.6742,0	1/1:80:0,80:0:0:80:2855:-257.178,-24.0824,0	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:60:0,60:0:0:60:2152:-193.944,-18.0618,0	1/1:69:0,69:0:0:69:2484:-223.813,-20.7711,0	0/1:40:24,16:24:860:16:576:-40.1338,0,-65.6806	1/1:66:0,66:0:0:66:2355:-212.205,-19.868,0	0/1:44:22,22:22:762:22:788:-57.9995,0,-55.6523	1/1:47:1,46:1:32:46:1656:-146.129,-10.9491,0	0/1:221:117,104:117:4112:104:3708:-267.392,0,-303.737	0/1:120:71,49:71:2468:49:1760:-122.56,0,-186.246	1/1:46:0,46:0:0:46:1640:-147.831,-13.8474,0	1/1:154:0,154:0:0:154:5493:-494.498,-46.3586,0	1/1:91:3,88:3:104:88:3144:-273.483,-17.6909,0	0/1:113:64,49:64:2255:49:1741:-122.956,0,-169.194	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	1/1:12:0,12:0:0:12:419:-38.0427,-3.61236,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:206:0,206:0:0:206:7356:-662.09,-62.0122,0	0/1:148:69,79:69:2414:79:2810:-207.731,0,-172.962	0/1:90:37,53:37:1237:53:1904:-144.545,0,-84.5262	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:60:34,26:34:1201:26:936:-66.4977,0,-90.3319	0/1:54:27,27:27:912:27:972:-71.5423,0,-66.1314	0/1:72:40,32:40:1394:32:1144:-81.5954,0,-104.079	0/1:84:44,40:44:1530:40:1432:-103.891,0,-112.704	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	0/1:85:46,39:46:1583:39:1393:-100.08,0,-117.166	0/1:102:54,48:54:1887:48:1724:-124.74,0,-139.398	0/1:84:50,34:50:1718:34:1216:-84.46,0,-129.612	1/1:62:0,62:0:0:62:2223:-200.333,-18.6639,0	1/1:109:0,109:0:0:109:3905:-351.643,-32.8123,0	1/1:49:0,49:0:0:49:1746:-157.424,-14.7505,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:83:60,23:60:2131:23:820:-49.137,0,-167.072	0/1:27:10,17:10:360:17:612:-47.2856,0,-24.6165	0/1:10:9,1:9:324:1:32:-0.189013,0,-26.4956	0/1:78:41,37:41:1450:37:1324:-95.9818,0,-106.457	0/1:51:21,30:21:748:30:1072:-81.4399,0,-52.2904	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:5,1:5:171:1:36:-1.79209,0,-13.9193	1/1:48:0,48:0:0:48:1720:-155.069,-14.4494,0	1/1:103:3,100:3:108:100:3588:-313.051,-20.9309,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:100:53,46:53:1866:46:1656:-119.205,0,-138.095	1/1:89:0,89:0:0:89:3183:-286.692,-26.7917,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:54:0,54:0:0:54:1940:-174.875,-16.2556,0	1/1:122:4,118:4:144:118:4209:-365.677,-23.412,0	0/1:89:65,24:65:2275:24:864:-51.2909,0,-178.219	1/1:65:0,65:0:0:65:2324:-209.262,-19.567,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:75:0,75:0:0:75:2681:-241.533,-22.5773,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:67:0,67:0:0:67:2387:-214.993,-20.169,0	0/1:57:38,19:38:1330:19:684:-44.7316,0,-102.84	1/1:157:0,157:0:0:157:5620:-505.92,-47.2617,0	1/1:67:0,67:0:0:67:2391:-215.447,-20.169,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:54:1,53:1:36:53:1896:-167.317,-12.6573,0	0/1:10:8,2:8:269:2:72:-3.82642,0,-21.5258	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:71:38,33:38:1338:33:1173:-84.5038,0,-99.3453	1/1:103:0,103:0:0:103:3657:-329.334,-31.0061,0	1/1:81:0,81:0:0:81:2895:-260.778,-24.3834,0	1/1:100:0,100:0:0:100:3579:-322.285,-30.103,0	0/1:71:36,35:36:1205:35:1256:-91.9698,0,-87.3689	1/1:168:1,167:1:36:167:5972:-533.989,-46.9748,0	1/1:27:0,27:0:0:27:955:-86.2648,-8.12781,0	0/1:83:42,41:42:1473:41:1459:-106.62,0,-107.877	1/1:86:0,85:0:0:85:3025:-272.102,-25.5876,0	0/1:56:30,26:30:1047:26:924:-66.6194,0,-77.6816	0/1:112:59,53:59:2067:53:1868:-134.683,0,-152.583	0/1:60:39,21:39:1361:21:752:-49.9445,0,-104.725	1/1:34:0,34:0:0:34:1209:-109.114,-10.235,0	1/1:115:0,115:0:0:115:4100:-369.187,-34.6185,0
chr08	5791032	.	GGCA	AGCA,AGAG	185801	PASS	AB=0.487029,0.508956;ABP=7.74221,5.26627;AC=150,36;AF=0.806452,0.193548;AN=186;AO=6864,1665;CIGAR=1X3M,1X1M2X;DP=8561;DPB=8560.75;DPRA=0,1.04396;EPP=14890.6,3618.51;EPPR=13.8677;GTI=0;LEN=1,4;MEANALT=1.74194,2.30233;MQM=59.9987,59.9477;MQMR=60;NS=93;NUMALT=2;ODDS=3.2396;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=245379,58363;QR=168;RO=5;RPL=6862,1665;RPP=14890.6,3618.51;RPPR=13.8677;RPR=2,0;RUN=1,1;SAF=0,0;SAP=14908,3618.51;SAR=6864,1665;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:1,21,0:1:24:21,0:752,0:-65.6064,-4.22277,0,-65.9074,-6.32163,-67.7609	1/1:123:0,123,0:0:0:123,0:4409,0:-396.98,-37.0267,0,-396.98,-37.0267,-396.98	1/2:108:0,59,48:0:0:59,48:2108,1687:-309.318,-137.442,-119.681,-172.006,0,-157.557	1/1:191:0,189,0:0:0:189,0:6733,0:-605.739,-56.8947,0,-605.739,-56.8947,-605.739	1/2:69:0,42,27:0:0:42,27:1504,953:-200.614,-77.9571,-65.3138,-123.011,0,-114.884	1/2:47:0,26,21:0:0:26,21:928,752:-137.339,-61.685,-53.8582,-76.0115,0,-69.6898	1/1:139:0,138,1:0:0:138,1:4925,34:-443.06,-41.5421,0,-440.302,-38.4443,-440.001	1/1:65:0,65,0:0:0:65,0:2322,0:-209.24,-19.567,0,-209.24,-19.567,-209.24	1/1:70:0,70,0:0:0:70,0:2505,0:-225.641,-21.0721,0,-225.641,-21.0721,-225.641	1/1:92:0,92,0:0:0:92,0:3300,0:-297.218,-27.6948,0,-297.218,-27.6948,-297.218	1/1:72:0,71,0:0:0:71,0:2548,0:-229.22,-21.3731,0,-229.22,-21.3731,-229.22	1/1:81:0,80,0:0:0:80,0:2872,0:-258.437,-24.0824,0,-258.437,-24.0824,-258.437	1/1:78:0,78,0:0:0:78,0:2808,0:-252.959,-23.4803,0,-252.959,-23.4803,-252.959	1/1:112:0,111,0:0:0:111,0:3971,0:-357.221,-33.4143,0,-357.221,-33.4143,-357.221	1/1:91:0,91,0:0:0:91,0:3272,0:-294.699,-27.3937,0,-294.699,-27.3937,-294.699	1/1:62:0,62,0:0:0:62,0:2228,0:-200.784,-18.6639,0,-200.784,-18.6639,-200.784	1/1:98:0,98,0:0:0:98,0:3516,0:-316.649,-29.5009,0,-316.649,-29.5009,-316.649	1/1:79:0,79,0:0:0:79,0:2832,0:-255.118,-23.7814,0,-255.118,-23.7814,-255.118	1/1:75:0,74,0:0:0:74,0:2647,0:-238.176,-22.2762,0,-238.176,-22.2762,-238.176	1/1:171:0,171,0:0:0:171,0:6124,0:-551.26,-51.4761,0,-551.26,-51.4761,-551.26	1/1:122:0,120,1:0:0:120,1:4290,36:-385.916,-36.1236,0,-382.979,-33.1862,-382.678	1/2:58:0,24,34:0:0:24,34:856,1205:-168.301,-98.5205,-91.2957,-70.1364,0,-59.9014	1/1:37:0,36,0:0:0:36,0:1278,0:-114.963,-10.8371,0,-114.963,-10.8371,-114.963	1/2:96:0,55,41:0:0:55,41:1964,1452:-278.756,-118.633,-102.076,-160.479,0,-148.136	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/2:272:0,161,109:0:0:161,109:5756,3789:-777.415,-308.076,-259.61,-469.366,0,-436.553	1/2:187:0,84,103:0:0:84,103:2993,3638:-540.582,-296.621,-271.335,-244.315,0,-213.309	1/1:43:0,43,0:0:0:43,0:1548,0:-139.613,-12.9443,0,-139.613,-12.9443,-139.613	1/1:267:0,266,0:0:0:266,0:9512,0:-855.749,-80.074,0,-855.749,-80.074,-855.749	1/1:144:1,137,6:1:36:137,6:4898,215:-437.375,-38.3035,0,-420.141,-23.7077,-421.272	1/2:104:0,62,42:0:0:62,42:2207,1466:-299.467,-119.589,-100.925,-180.23,0,-167.587	1/2:9:0,6,3:0:0:6,3:212,90:-24.7958,-7.49485,-5.68867,-17.6186,0,-16.7155	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:6:0,2,4:0:0:2,4:68,133:-16.6117,-11.0935,-10.4914,-5.85565,0,-4.65153	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:249:0,249,0:0:0:249,0:8915,0:-802.332,-74.9565,0,-802.332,-74.9565,-802.332	1/2:172:0,72,99:0:0:72,99:2573,3484:-493.399,-283.609,-261.935,-209.785,0,-179.983	1/2:115:0,51,63:0:0:51,63:1825,2229:-330.373,-181.55,-166.198,-148.819,0,-129.854	.:.:.:.:.:.:.:.	1/2:95:0,59,36:0:0:59,36:2100,1277:-275.55,-104.396,-86.6351,-171.509,0,-160.672	1/2:76:0,38,38:0:0:38,38:1356,1319:-218.117,-107.568,-96.1285,-110.901,0,-99.4622	1/2:129:0,59,70:0:0:59,70:2112,2449:-371.819,-199.585,-181.824,-172.588,0,-151.516	1/2:102:0,42,60:0:0:42,60:1499,2088:-292.334,-170.126,-157.483,-122.561,0,-104.499	1/1:75:0,75,0:0:0:75,0:2688,0:-242.165,-22.5773,0,-242.165,-22.5773,-242.165	1/2:82:0,40,40:0:0:40,40:1424,1395:-229.507,-113.443,-101.402,-116.057,0,-104.015	1/2:134:0,54,79:0:0:54,79:1932,2785:-384.404,-226.858,-210.602,-157.649,0,-133.868	1/2:163:0,81,81:0:0:81,81:2879,2873:-468.73,-234.121,-209.737,-234.663,0,-210.28	1/1:90:0,88,2:0:0:88,2:3147,72:-283.095,-26.4906,0,-277.22,-20.256,-276.618	1/1:136:0,136,0:0:0:136,0:4863,0:-437.823,-40.9401,0,-437.823,-40.9401,-437.823	1/1:128:1,127,0:1:36:127,0:4518,0:-403.189,-34.9336,0,-403.49,-38.2308,-406.427	1/2:7:0,4,3:0:0:4,3:144,103:-20.4659,-8.70671,-7.50259,-12.1095,0,-11.2064	1/2:129:0,62,67:0:0:62,67:2224,2380:-375.693,-194.29,-175.626,-181.76,0,-161.591	1/2:20:0,13,7:0:0:13,7:453,245:-57.1205,-20.2836,-16.3702,-37.1862,0,-35.079	1/2:15:0,5,10:0:0:5,10:180,346:-43.1547,-28.463,-26.9578,-15.0469,0,-12.0366	1/2:134:0,59,75:0:0:59,75:2116,2605:-384.713,-212.118,-194.358,-172.948,0,-150.371	1/2:35:0,22,13:0:0:22,13:777,441:-99.3835,-36.1,-29.4774,-63.6277,0,-59.7143	1/1:5:0,5,0:0:0:5,0:180,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chr08	5804769	.	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chr08	5850252	.	T	A	33046.3	PASS	AB=0.56566;ABP=208.895;AC=36;AF=0.191489;AN=188;AO=3127;CIGAR=1X;DP=12718;DPB=12718;DPRA=1.37667;EPP=6793.2;EPPR=20803.5;GTI=4;LEN=1;MEANALT=1.06977;MQM=29.047;MQMR=25.2235;NS=94;NUMALT=1;ODDS=1.29687;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111958;QR=343500;RO=9587;RPL=3127;RPP=6793.2;RPPR=20803.5;RPR=0;RUN=1;SAF=3127;SAP=6793.2;SAR=0;SRF=9587;SRP=20820.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1068:0:0:0,-9.0309,-66.7173	0/0:248:248,0:248:8884:0:0:0,-74.6554,-556.074	0/1:233:97,136:97:3460:136:4849:-272.171,0,-145.398	0/0:294:293,1:293:10515:1:36:0,-85.6817,-630.754	0/1:125:61,64:61:2176:64:2304:-123.91,0,-97.2637	0/1:126:47,78:47:1683:78:2799:-160.14,0,-68.2982	0/0:208:208,0:208:7463:0:0:0,-62.6142,-450.88	0/0:219:219,0:219:7839:0:0:0,-65.9256,-489.87	0/0:71:71,0:71:2544:0:0:0,-21.3731,-158.42	0/0:124:124,0:124:4440:0:0:0,-37.3277,-267.867	0/0:63:63,0:63:2260:0:0:0,-18.9649,-136.004	0/0:60:60,0:60:2152:0:0:0,-18.0618,-133.975	0/0:70:70,0:70:2512:0:0:0,-21.0721,-157.378	0/0:71:71,0:71:2530:0:0:0,-21.3731,-157.054	0/0:57:57,0:57:2024:0:0:0,-17.1587,-122.492	0/0:57:57,0:57:2052:0:0:0,-17.1587,-126.708	0/0:64:64,0:64:2300:0:0:0,-19.2659,-143.311	0/0:78:78,0:78:2799:0:0:0,-23.4803,-174.362	0/0:41:41,0:41:1476:0:0:0,-12.3422,-91.9594	0/0:401:401,0:401:14387:0:0:0,-120.713,-864.25	0/0:157:157,0:157:5630:0:0:0,-47.2617,-350.592	0/1:293:59,234:59:2116:234:8353:-502.321,0,-48.4795	0/0:171:171,0:171:6116:0:0:0,-51.4761,-368.781	0/1:145:72,73:72:2588:73:2620:-143.797,0,-116.665	0/0:73:73,0:73:2597:0:0:0,-21.9752,-167.073	0/1:449:193,256:193:6927:256:9132:-509.571,0,-310.633	0/1:420:210,210:210:7490:210:7532:-405.124,0,-340.915	0/0:36:36,0:36:1296:0:0:0,-10.8371,-80.9408	0/0:478:478,0:478:17139:0:0:0,-143.892,-1101.06	0/0:139:131,8:131:4704:8:273:0,-21.9954,-271.374	0/1:214:88,126:88:3151:126:4532:-255.727,0,-124.783	0/1:22:10,12:10:351:12:432:-24.1271,0,-15.4074	0/0:41:41,0:41:1464:0:0:0,-12.3422,-92.7648	0/1:26:14,12:14:504:12:428:-22.8346,0,-24.4268	0/0:26:26,0:26:932:0:0:0,-7.82678,-58.6297	0/0:38:38,0:38:1338:0:0:0,-11.4391,-83.6887	0/0:172:171,0:171:6116:0:0:0,-51.4761,-395.991	0/1:299:119,180:119:4272:180:6412:-363.894,0,-173.749	0/1:63:39,24:39:1400:24:864:-41.6944,0,-67.659	0/0:15:15,0:15:527:0:0:0,-4.51545,-33.3464	0/1:289:118,171:118:4224:171:6129:-341.579,0,-174.905	0/1:35:19,16:19:684:16:572:-30.2814,0,-31.5554	0/1:240:102,137:102:3656:137:4924:-274.706,0,-156.044	0/1:74:44,30:44:1580:30:1080:-54.0193,0,-71.5766	0/0:56:56,0:56:2012:0:0:0,-16.8577,-121.425	0/1:131:75,56:75:2700:56:2000:-102.834,0,-137.167	0/1:228:100,128:100:3588:128:4581:-253.914,0,-153.421	0/1:315:114,201:114:4077:201:7194:-414.033,0,-148.594	0/0:120:120,0:120:4312:0:0:0,-36.1236,-258.975	0/0:143:143,0:143:5136:0:0:0,-43.0473,-307.712	0/0:166:166,0:166:5952:0:0:0,-49.971,-380.089	0/1:16:7,8:7:248:8:288:-15.8445,0,-10.1652	0/1:233:107,126:107:3844:126:4536:-248.992,0,-167.497	0/1:98:33,65:33:1175:65:2328:-134.812,0,-47.2735	0/1:38:14,24:14:500:24:864:-49.7783,0,-20.819	0/1:196:95,101:95:3403:101:3621:-197.511,0,-152.582	0/1:62:27,35:27:972:35:1256:-70.3944,0,-39.4165	0/0:42:42,0:42:1499:0:0:0,-12.6433,-98.1179	0/1:34:17,17:17:603:17:612:-33.2096,0,-28.0367	0/0:103:103,0:103:3679:0:0:0,-31.0061,-230.361	0/0:76:76,0:76:2728:0:0:0,-22.8783,-162.254	0/0:31:31,0:31:1116:0:0:0,-9.33193,-66.7659	0/1:260:130,130:130:4668:130:4639:-250.037,0,-220.05	0/0:291:289,2:289:10358:2:72:0,-82.2397,-619.19	0/0:60:60,0:60:2156:0:0:0,-18.0618,-132.734	0/0:128:128,0:128:4580:0:0:0,-38.5318,-277.759	0/0:271:268,3:268:9597:3:108:0,-73.6801,-570.89	0/1:327:96,231:96:3456:231:8276:-485.028,0,-110.765	0/0:28:28,0:28:1004:0:0:0,-8.42884,-62.3714	0/0:106:106,0:106:3792:0:0:0,-31.9092,-237.751	0/0:68:68,0:68:2440:0:0:0,-20.47,-154.171	0/0:29:29,0:29:1040:0:0:0,-8.72987,-62.1506	0/0:134:134,0:134:4802:0:0:0,-40.338,-300.519	0/1:60:25,35:25:896:35:1256:-70.3333,0,-37.3113	0/0:187:187,0:187:6664:0:0:0,-56.2926,-414.729	0/0:290:290,0:290:10396:0:0:0,-87.2987,-620.672	0/0:100:99,1:99:3556:1:36:0,-27.2819,-217.851	0/0:137:136,1:136:4892:1:36:0,-38.42,-302.121	0/1:24:8,16:8:288:16:557:-32.7523,0,-10.7837	0/0:202:202,0:202:7252:0:0:0,-60.8081,-451.38	0/1:139:78,61:78:2772:61:2187:-111.099,0,-130.804	0/0:318:318,0:318:11420:0:0:0,-95.7275,-688.884	0/0:113:113,0:113:4060:0:0:0,-34.0164,-243.869	0/0:63:63,0:63:2259:0:0:0,-18.9649,-138.239	0/1:74:46,28:46:1647:28:1000:-48.2755,0,-78.0355	0/0:123:123,0:123:4386:0:0:0,-37.0267,-263.324	0/0:36:36,0:36:1292:0:0:0,-10.8371,-80.0489	0/1:58:26,32:26:932:32:1152:-63.2417,0,-41.4997	0/0:55:55,0:55:1937:0:0:0,-16.5566,-122.328	0/1:37:26,11:26:936:11:396:-16.2394,0,-46.7472	0/1:60:37,23:37:1328:23:828:-39.8838,0,-63.9521	0/1:55:32,23:32:1148:23:828:-42.8982,0,-51.9219	0/0:140:140,0:140:5015:0:0:0,-42.1442,-300.85	0/0:102:101,1:101:3621:1:36:0,-29.0104,-216.491
chr08	5850256	.	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chr08	5934826	.	G	A	11773.3	PASS	AB=0.442809;ABP=53.1829;AC=34;AF=0.180851;AN=188;AO=785;CIGAR=1X;DP=4870;DPB=4870;DPRA=1.08636;EPP=1707.62;EPPR=8871.3;GTI=0;LEN=1;MEANALT=1.02703;MQM=59.479;MQMR=59.6332;NS=94;NUMALT=1;ODDS=0.6027;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27498;QR=145195;RO=4084;RPL=785;RPP=1707.62;RPPR=8862.62;RPR=0;RUN=1;SAF=785;SAP=1707.62;SAR=0;SRF=4083;SRP=8862.62;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1534:0:0:0,-13.2453,-138.339	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.555	0/1:102:54,48:54:1928:48:1645:-117.607,0,-143.072	0/0:101:101,0:101:3636:0:0:0,-30.404,-327.437	0/1:25:14,11:14:496:11:384:-27.3689,0,-37.447	0/1:19:11,8:11:396:8:284:-20.1755,0,-30.2632	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.084	0/0:138:138,0:138:4934:0:0:0,-41.5421,-444.166	0/0:64:64,0:64:2258:0:0:0,-19.2659,-203.474	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.779	0/0:29:29,0:29:1018:0:0:0,-8.72987,-91.9304	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.544	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.842	0/0:22:22,0:22:771:0:0:0,-6.62266,-69.6735	0/0:39:39,0:39:1381:0:0:0,-11.7402,-124.578	0/0:16:16,0:16:560:0:0:0,-4.81648,-50.7124	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4355	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9981	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.584	0/0:58:58,0:58:2039:0:0:0,-17.4597,-183.678	0/1:49:27,22:27:945:22:754:-52.5629,0,-70.6118	0/0:24:24,0:24:843:0:0:0,-7.22472,-76.1824	0/1:22:18,4:18:648:4:144:-6.68938,0,-52.0246	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8088	0/1:144:73,70:73:2601:70:2450:-177.434,0,-190.984	0/1:103:58,45:58:2052:45:1597:-113.012,0,-153.909	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:171:171,0:171:6082:0:0:0,-51.4761,-547.467	0/0:93:92,1:92:3279:1:36:0,-24.3975,-291.697	0/1:50:24,26:24:864:26:915:-67.4221,0,-63.0208	0/1:3:1,2:1:36:2:57:-4.51022,0,-2.69518	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07869	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2897	0/0:17:17,0:17:584:0:0:0,-5.11751,-52.8808	0/0:101:101,0:101:3575:0:0:0,-30.404,-321.955	0/1:87:48,39:48:1715:39:1388:-99.0293,0,-128.041	0/1:24:11,13:11:375:13:464:-34.8728,0,-26.8498	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:60:40,20:40:1436:20:697:-44.9842,0,-111.47	0/1:18:8,10:8:288:10:360:-27.3073,0,-20.8489	0/1:104:66,38:66:2356:38:1348:-89.5859,0,-180.96	0/1:24:13,11:13:451:11:392:-28.393,0,-33.6951	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:91:46,45:46:1652:45:1558:-113.107,0,-121.554	0/1:53:32,21:32:1139:21:718:-48.9647,0,-86.8556	0/1:79:52,27:52:1860:27:957:-62.6625,0,-143.894	0/0:86:86,0:86:3034:0:0:0,-25.8886,-273.259	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200	0/0:116:116,0:116:4131:0:0:0,-34.9195,-371.962	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83426	0/1:89:52,37:52:1844:37:1282:-88.8849,0,-139.274	0/1:47:32,15:32:1144:15:536:-34.4264,0,-89.065	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:73:31,42:31:1093:42:1488:-112.234,0,-76.6931	0/1:28:17,11:17:608:11:377:-25.8291,0,-46.6232	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9818	0/1:7:3,4:3:108:4:136:-10.4683,0,-7.96796	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.716	0/0:77:77,0:77:2711:0:0:0,-23.1793,-244.233	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/1:60:35,25:35:1252:25:864:-59.8806,0,-94.9049	0/0:114:114,0:114:4040:0:0:0,-34.3174,-363.771	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.342	0/0:38:38,0:38:1321:0:0:0,-11.4391,-119.181	0/0:92:91,1:91:3246:1:36:0,-24.0965,-288.613	0/1:109:37,72:37:1320:72:2553:-197.197,0,-86.2832	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7566	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.246	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.191	0/0:134:134,0:134:4733:0:0:0,-40.338,-426.095	0/1:54:32,22:32:1136:22:759:-52.2642,0,-86.2924	0/0:74:74,0:74:2627:0:0:0,-22.2762,-236.648	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.343	0/0:81:81,0:81:2878:0:0:0,-24.3834,-259.195	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.28	0/1:15:8,7:8:275:7:248:-18.1487,0,-20.5598	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.291	0/1:68:43,25:43:1536:25:862:-57.3917,0,-117.971	0/0:150:150,0:150:5308:0:0:0,-45.1545,-477.822	0/0:52:52,0:52:1850:0:0:0,-15.6536,-166.776	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.028	0/1:16:10,6:10:356:6:216:-14.9717,0,-27.5648	0/0:63:62,1:62:2200:1:36:0,-15.3692,-194.66	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.5145	0/1:34:16,18:16:568:18:627:-46.5183,0,-41.2168	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.555	0/1:26:15,11:15:536:11:381:-26.7846,0,-40.7398	0/1:56:43,13:43:1540:13:453:-24.2337,0,-122.026	0/1:22:11,11:11:396:11:388:-28.6347,0,-29.3601	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.55	0/0:37:37,0:37:1279:0:0:0,-11.1381,-115.405
chr08	5934967	.	G	A	22013.8	PASS	AB=0.554878;ABP=63.07;AC=36;AF=0.191489;AN=188;AO=1287;CIGAR=1X;DP=5577;DPB=5577;DPRA=1.2839;EPP=2797.7;EPPR=9294.75;GTI=1;LEN=1;MEANALT=1.04878;MQM=59.8904;MQMR=59.9739;NS=94;NUMALT=1;ODDS=0.457446;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46016;QR=152497;RO=4287;RPL=0;RPP=2797.7;RPPR=9294.75;RPR=1287;RUN=1;SAF=0;SAP=2797.7;SAR=1287;SRF=0;SRP=9312.11;SRR=4287;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:117:117,0:117:4174:0:0:0,-35.2205,-375.842	0/1:120:56,64:56:1998:64:2274:-168.798,0,-143.961	0/0:130:130,0:130:4629:0:0:0,-39.1339,-416.774	0/1:62:27,35:27:968:35:1260:-95.0416,0,-68.7735	0/1:49:25,24:25:883:24:860:-62.9632,0,-65.037	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:158:158,0:158:5656:0:0:0,-47.5627,-509.149	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/0:93:93,0:93:3315:0:0:0,-27.9958,-298.569	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:30:30,0:30:1042:0:0:0,-9.0309,-94.0855	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:108:108,0:108:3803:0:0:0,-32.5112,-342.456	0/0:92:92,0:92:3255:0:0:0,-27.6948,-293.171	0/1:108:34,74:34:1201:74:2656:-206.774,0,-75.8824	0/0:60:58,2:58:2067:2:72:0,-11.2251,-179.464	0/1:74:38,36:38:1356:36:1292:-94.3075,0,-100.064	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/1:191:87,104:87:3100:104:3720:-276.053,0,-221.732	0/1:110:55,54:55:1953:54:1921:-140.14,0,-143.019	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:166:165,0:165:5895:0:0:0,-49.6699,-530.3	0/0:139:132,7:132:4717:7:243:0,-19.6357,-402.481	0/1:81:41,40:41:1468:40:1436:-105.154,0,-108.033	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:103:103,0:103:3662:0:0:0,-31.0061,-329.785	0/1:134:55,79:55:1972:79:2828:-214.421,0,-137.417	0/1:20:11,9:11:396:9:316:-22.7583,0,-29.9621	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:102:44,58:44:1551:58:2072:-156.019,0,-109.173	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:70:30,40:30:1071:40:1418:-106.839,0,-75.6295	0/1:21:12,9:12:428:9:316:-22.4572,0,-32.5372	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:87:52,35:52:1837:35:1260:-87.4983,0,-139.419	0/1:93:40,53:40:1425:53:1895:-142.809,0,-100.55	0/1:118:33,84:33:1171:84:3004:-235.159,0,-70.2619	0/0:48:48,0:48:1680:0:0:0,-14.4494,-151.481	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.152	0/0:91:91,0:91:3246:0:0:0,-27.3937,-292.361	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/1:111:41,70:41:1476:70:2507:-192.467,0,-99.7218	0/1:48:21,27:21:752:27:972:-73.3485,0,-53.5568	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:87:43,44:43:1526:44:1565:-114.95,0,-111.442	0/1:42:27,15:27:947:15:540:-36.2933,0,-72.9005	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:17:9,8:9:315:8:288:-21.1499,0,-23.5697	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:133:46,87:46:1639:87:3104:-239.548,0,-107.761	0/0:140:140,0:140:4982:0:0:0,-42.1442,-448.53	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:61:61,0:61:2123:0:0:0,-18.3628,-191.334	0/0:117:115,2:115:4089:2:72:0,-28.3838,-361.36	0/1:91:32,59:32:1135:59:2111:-162.63,0,-75.064	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:58:58,0:58:2056:0:0:0,-17.4597,-185.309	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:42:42,0:42:1478:0:0:0,-12.6433,-133.313	0/1:42:19,23:19:676:23:828:-62.2009,0,-48.5247	0/0:104:103,1:103:3653:1:36:0,-27.7088,-325.374	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.402	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:63:62,1:62:2178:1:36:0,-15.3666,-192.685	0/1:15:6,9:6:212:9:315:-24.1718,0,-14.9093	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:99:45,54:45:1596:54:1935:-144.624,0,-114.128	0/0:161:161,0:161:5696:0:0:0,-48.4658,-512.675	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.401	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:39:22,17:22:775:17:612:-43.6733,0,-58.331	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.259	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:30:10,20:10:360:20:712:-55.3758,0,-23.7134	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:18:11,7:11:388:7:252:-17.6104,0,-29.8388	0/1:30:13,17:13:468:17:604:-45.6597,0,-33.4287	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/0:53:53,0:53:1855:0:0:0,-15.9546,-167.22
chr08	6023600	.	A	G	138293	PASS	AB=0.526043;ABP=21.2202;AC=153;AF=0.81383;AN=188;AO=6395;CIGAR=1X;DP=7876;DPB=7876;DPRA=0;EPP=13880.9;EPPR=3212.45;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9933;MQMR=59.9946;NS=94;NUMALT=1;ODDS=1.51236;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228824;QR=52711;RO=1478;RPL=0;RPP=13889.6;RPPR=3212.45;RPR=6395;RUN=1;SAF=6394;SAP=13880.9;SAR=1;SRF=1478;SRP=3212.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1271:-114.463,-10.8371,0	1/1:127:0,127:0:0:127:4554:-410.026,-38.2308,0	0/1:110:40,70:40:1413:70:2504:-192.499,0,-94.352	1/1:160:1,159:1:32:159:5712:-510.996,-44.9655,0	0/1:49:29,20:29:1036:20:716:-50.0172,0,-78.8034	0/1:47:19,28:19:672:28:996:-75.8065,0,-46.6551	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	1/1:62:0,62:0:0:62:2207:-198.895,-18.6639,0	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	1/1:113:0,113:0:0:113:4035:-363.337,-34.0164,0	1/1:69:0,69:0:0:69:2479:-223.363,-20.7711,0	1/1:87:0,87:0:0:87:3111:-280.217,-26.1896,0	1/1:67:1,66:1:36:66:2346:-207.8,-16.5707,0	1/1:100:0,100:0:0:100:3596:-323.845,-30.103,0	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:88:2,86:2:72:86:3084:-270.951,-19.6539,0	1/1:48:0,48:0:0:48:1716:-154.725,-14.4494,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:121:0,121:0:0:121:4310:-388.079,-36.4246,0	1/1:124:0,124:0:0:124:4445:-400.219,-37.3277,0	0/1:201:132,69:132:4705:69:2484:-163.306,0,-363.103	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	0/1:103:37,66:37:1324:66:2372:-182.732,0,-88.456	1/1:73:0,73:0:0:73:2597:-233.977,-21.9752,0	0/1:259:107,152:107:3817:152:5440:-411.762,0,-265.76	0/1:164:96,68:96:3448:68:2440:-170.486,0,-261.163	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:228:0,228:0:0:228:8160:-734.415,-68.6348,0	1/1:104:4,99:4:144:99:3548:-306.215,-18.0523,0	0/1:100:48,52:48:1716:52:1864:-137.936,0,-124.623	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:178:0,178:0:0:178:6348:-571.413,-53.5833,0	0/1:218:105,113:105:3764:113:4040:-298.164,0,-273.334	0/1:51:23,28:23:824:28:998:-74.7824,0,-59.1308	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:104:37,67:37:1320:67:2388:-183.871,0,-87.7948	0/1:29:8,21:8:284:21:747:-58.8244,0,-17.1735	0/1:141:57,84:57:2021:84:2993:-227.157,0,-139.716	0/1:62:32,30:32:1144:30:1080:-78.8494,0,-84.6057	1/1:65:1,64:1:36:64:2296:-203.303,-15.9687,0	0/1:105:55,50:55:1953:50:1796:-130.314,0,-144.436	0/1:69:24,45:24:860:45:1616:-124.959,0,-56.9508	0/1:108:61,47:61:2184:47:1692:-120.056,0,-164.315	1/1:72:0,71:0:0:71:2552:-229.57,-21.3731,0	1/1:101:0,101:0:0:101:3627:-326.634,-30.404,0	1/1:123:0,123:0:0:123:4401:-396.262,-37.0267,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:94:40,54:40:1405:54:1937:-146.31,0,-98.4483	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	0/1:96:50,46:50:1796:46:1652:-120.07,0,-133.023	0/1:46:22,24:22:788:24:856:-63.5137,0,-57.3974	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	1/1:92:0,92:0:0:92:3298:-297.039,-27.6948,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:186:89,97:89:3150:97:3480:-257.419,0,-227.733	1/1:132:0,132:0:0:132:4719:-424.869,-39.736,0	1/1:71:1,70:1:36:70:2512:-222.734,-17.7749,0	1/1:49:0,49:0:0:49:1748:-157.604,-14.7505,0	1/1:152:0,152:0:0:152:5432:-489.011,-45.7566,0	0/1:92:52,40:52:1838:40:1427:-101.033,0,-138.002	1/1:28:0,28:0:0:28:979:-88.4215,-8.42884,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	1/1:77:0,76:0:0:76:2703:-243.153,-22.8783,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:38:17,21:17:612:21:745:-55.9339,0,-43.9743	1/1:123:1,122:1:36:122:4356:-388.617,-33.4284,0	1/1:123:0,123:0:0:123:4401:-396.261,-37.0267,0	1/1:182:0,182:0:0:182:6526:-587.422,-54.7875,0	1/1:100:2,98:2:72:98:3501:-308.463,-23.2663,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	0/1:166:75,91:75:2665:91:3264:-244.009,0,-190.124	1/1:166:0,166:0:0:166:5919:-532.818,-49.971,0	1/1:108:0,108:0:0:108:3875:-348.943,-32.5112,0	1/1:60:0,60:0:0:60:2126:-191.606,-18.0618,0	0/1:108:52,56:52:1864:56:2008:-148.482,0,-135.528	1/1:137:0,137:0:0:137:4902:-441.33,-41.2411,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:84:30,54:30:1076:54:1931:-148.779,0,-71.8663	1/1:64:0,64:0:0:64:2278:-205.281,-19.2659,0	0/1:37:19,18:19:672:18:640:-46.7912,0,-49.6687	0/1:96:50,46:50:1776:46:1656:-120.43,0,-131.224	0/1:62:31,31:31:1112:31:1112:-81.7275,0,-81.7275	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:119:0,119:0:0:119:4241:-381.871,-35.8226,0
chr08	6106548	.	A	G	270946	PASS	AB=0.481834;ABP=14.4498;AC=153;AF=0.81383;AN=188;AO=9770;CIGAR=1X;DP=11865;DPB=11865;DPRA=127.57;EPP=21062.2;EPPR=4485.13;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9585;MQMR=59.9952;NS=94;NUMALT=1;ODDS=0.650849;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=347924;QR=74868;RO=2092;RPL=5161;RPP=70.7336;RPPR=21.0962;RPR=4609;RUN=1;SAF=5143;SAP=62.1881;SAR=4627;SRF=1105;SRP=17.4633;SRR=987;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:71:2,69:2:72:69:2459:-214.727,-14.5364,0	1/1:174:0,173:0:0:173:6167:-554.771,-52.0782,0	0/1:172:79,93:79:2818:93:3315:-246.792,0,-202.081	1/1:205:0,205:0:0:205:7294:-656.513,-61.7112,0	0/1:102:41,61:41:1472:61:2164:-164.319,0,-102.071	0/1:87:44,43:44:1576:43:1525:-111.351,0,-115.942	1/1:166:0,166:0:0:166:5907:-531.741,-49.971,0	1/1:204:1,202:1:36:202:7195:-644.01,-57.8706,0	1/1:136:1,135:1:36:135:4779:-426.664,-37.3418,0	1/1:159:0,159:0:0:159:5661:-509.611,-47.8638,0	1/1:138:0,138:0:0:138:4877:-439.085,-41.5421,0	1/1:195:0,195:0:0:195:6875:-618.818,-58.7009,0	1/1:160:1,159:1:32:159:5696:-509.558,-44.9655,0	1/1:163:0,163:0:0:163:5789:-521.125,-49.0679,0	1/1:139:0,139:0:0:139:4946:-445.289,-41.8432,0	1/1:137:0,137:0:0:137:4885:-439.802,-41.2411,0	1/1:150:0,150:0:0:150:5363:-482.801,-45.1545,0	1/1:148:0,148:0:0:148:5299:-477.044,-44.5524,0	1/1:120:0,120:0:0:120:4252:-382.861,-36.1236,0	1/1:225:0,225:0:0:225:8051:-724.607,-67.7318,0	1/1:246:0,246:0:0:246:8775:-789.735,-74.0534,0	0/1:56:41,15:41:1464:15:540:-32.0789,0,-115.198	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:174:71,103:71:2533:103:3679:-278.934,0,-175.841	1/1:92:1,91:1:36:91:3244:-288.584,-24.0965,0	0/1:203:107,96:107:3836:96:3411:-246.097,0,-284.327	0/1:113:65,48:65:2332:48:1692:-118.547,0,-176.123	1/1:95:0,95:0:0:95:3371:-303.608,-28.5979,0	1/1:184:0,184:0:0:184:6591:-593.269,-55.3895,0	1/1:92:4,88:4:144:88:3136:-269.122,-14.3811,0	0/1:100:59,41:59:2086:41:1464:-101.953,0,-157.904	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:18:0,18:0:0:18:636:-57.568,-5.41854,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:339:0,339:0:0:339:12021:-1081.71,-102.049,0	0/1:92:44,48:44:1572:48:1707:-126.219,0,-114.077	0/1:137:77,60:77:2764:60:2123:-150.086,0,-207.746	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:235:111,123:111:3963:123:4392:-324.652,0,-286.061	0/1:75:32,43:32:1152:43:1540:-116.316,0,-81.4129	0/1:182:88,94:88:3164:94:3371:-248.817,0,-230.196	0/1:202:120,82:120:4304:82:2892:-199.707,0,-326.728	1/1:131:0,131:0:0:131:4662:-419.671,-39.4349,0	0/1:101:47,54:47:1684:54:1932:-143.753,0,-121.443	0/1:89:44,45:44:1568:45:1616:-118.938,0,-114.62	0/1:146:65,81:65:2332:81:2904:-217.645,0,-166.189	1/1:105:0,105:0:0:105:3756:-338.24,-31.6082,0	1/1:113:0,113:0:0:113:4052:-364.867,-34.0164,0	1/1:190:1,189:1:36:189:6771:-605.863,-53.5974,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:253:112,141:112:4000:141:5002:-374.168,0,-284.03	0/1:24:7,17:7:248:17:612:-48.1887,0,-15.4395	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:130:68,62:68:2428:62:2187:-157.959,0,-179.642	0/1:54:30,24:30:1076:24:856:-61.1055,0,-80.8972	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:55:1,54:1:36:54:1911:-168.667,-12.9584,0	1/1:186:3,183:3:108:183:6487:-573.84,-45.9164,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:90:57,33:57:2044:33:1158:-77.4323,0,-157.139	1/1:132:0,132:0:0:132:4697:-422.889,-39.736,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:86:0,86:0:0:86:3050:-274.73,-25.8886,0	1/1:171:3,168:3:108:168:6006:-530.569,-41.401,0	0/1:96:66,30:66:2359:30:1076:-68.254,0,-183.669	1/1:71:0,71:0:0:71:2531:-227.912,-21.3731,0	1/1:122:0,122:0:0:122:4321:-389.054,-36.7257,0	1/1:164:0,164:0:0:164:5860:-527.513,-49.3689,0	1/1:33:0,33:0:0:33:1146:-103.441,-9.93399,0	1/1:84:0,84:0:0:84:2988:-268.214,-25.2865,0	0/1:101:38,63:38:1368:63:2254:-172.719,0,-93.0168	1/1:206:0,206:0:0:206:7358:-662.268,-62.0122,0	1/1:158:1,157:1:36:157:5631:-503.299,-43.9645,0	1/1:125:0,125:0:0:125:4449:-400.568,-37.6288,0	1/1:112:1,111:1:36:111:3957:-352.724,-30.1171,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:147:2,145:2:72:145:5204:-461.632,-37.4147,0	0/1:124:57,67:57:2044:67:2374:-176.59,0,-146.904	1/1:242:0,242:0:0:242:8616:-775.427,-72.8493,0	1/1:183:0,183:0:0:183:6487:-583.921,-55.0885,0	1/1:125:0,125:0:0:125:4454:-401.029,-37.6288,0	0/1:205:115,90:115:4111:90:3197:-226.242,0,-308.464	1/1:277:0,277:0:0:277:9843:-885.728,-83.3853,0	1/1:95:0,95:0:0:95:3387:-305.046,-28.5979,0	0/1:162:81,81:81:2904:81:2893:-211.839,0,-212.829	1/1:158:0,158:0:0:158:5590:-503.222,-47.5627,0	0/1:113:64,49:64:2288:49:1747:-123.497,0,-172.165	0/1:195:125,70:125:4454:70:2493:-165.922,0,-342.33	0/1:156:102,54:102:3668:54:1919:-126.026,0,-283.361	1/1:186:1,185:1:36:185:6565:-587.337,-52.3933,0	1/1:270:1,269:1:36:269:9602:-860.491,-77.6798,0
chr08	6106717	.	CTC	GTT,GTC	217025	PASS	AB=0.450132,0.547477;ABP=93.3225,84.8672;AC=150,36;AF=0.806452,0.193548;AN=186;AO=7770,2318;CIGAR=1X1M1X,1X2M;DP=10114;DPB=10116;DPRA=0,1.15332;EPP=16875.4,5036.48;EPPR=9.52472;GTI=3;LEN=3,1;MEANALT=1.75269,2.29167;MQM=59.965,59.9616;MQMR=60;NS=93;NUMALT=2;ODDS=0.674527;PAIRED=0,0;PAIREDR=0;PAO=3,3;PQA=102,102;PQR=0;PRO=0;QA=274831,83005;QR=108;RO=3;RPL=7770,2318;RPP=16875.4,5036.48;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=16875.4,5036.48;SAR=7770,2318;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:71:0,71,0:0:0:71,0:2475,0:-223.003,-21.3731,0,-223.003,-21.3731,-223.003	1/1:121:0,121,0:0:0:121,0:4283,0:-385.588,-36.4246,0,-385.588,-36.4246,-385.588	1/2:332:1,164,167:1:36:164,167:5788,5978:-955.297,-484.286,-437.854,-468.37,0,-421.035	1/1:230:1,228,0:1:36:228,0:8083,0:-723.897,-65.6974,0,-724.198,-68.6348,-727.135	1/2:70:0,35,34:0:0:35,34:1225,1224:-199.581,-99.9206,-89.3846,-99.7039,0,-89.4689	1/2:48:0,32,16:0:0:32,16:1139,576:-140.186,-47.3585,-37.7255,-93.1856,0,-88.3691	1/1:115:0,113,2:0:0:113,2:3996,72:-359.467,-34.0164,0,-353.592,-27.7817,-352.99	1/1:107:0,107,0:0:0:107,0:3792,0:-341.48,-32.2102,0,-341.48,-32.2102,-341.48	1/1:104:0,103,0:0:0:103,0:3670,0:-330.145,-31.0061,0,-330.145,-31.0061,-330.145	1/1:83:0,83,0:0:0:83,0:2955,0:-266.185,-24.9855,0,-266.185,-24.9855,-266.185	1/1:88:0,87,0:0:0:87,0:3103,0:-279.138,-26.1896,0,-279.138,-26.1896,-279.138	1/1:129:1,128,0:1:36:128,0:4547,0:-405.801,-35.2346,0,-406.102,-38.5318,-409.039	1/1:90:0,90,0:0:0:90,0:3193,0:-287.596,-27.0927,0,-287.596,-27.0927,-287.596	1/1:90:0,90,0:0:0:90,0:3193,0:-287.586,-27.0927,0,-287.586,-27.0927,-287.586	1/1:116:0,116,0:0:0:116,0:4110,0:-370.085,-34.9195,0,-370.085,-34.9195,-370.085	1/1:95:0,95,0:0:0:95,0:3383,0:-304.686,-28.5979,0,-304.686,-28.5979,-304.686	1/1:37:0,37,0:0:0:37,0:1301,0:-117.39,-11.1381,0,-117.39,-11.1381,-117.39	1/1:32:0,32,0:0:0:32,0:1142,0:-103.089,-9.63296,0,-103.089,-9.63296,-103.089	1/1:52:0,52,0:0:0:52,0:1814,0:-163.539,-15.6536,0,-163.539,-15.6536,-163.539	1/1:313:0,312,0:0:0:312,0:10990,0:-988.657,-93.9214,0,-988.657,-93.9214,-988.657	1/1:136:0,136,0:0:0:136,0:4807,0:-432.79,-40.9401,0,-432.79,-40.9401,-432.79	1/2:133:0,47,86:0:0:47,86:1683,3088:-389.509,-252.259,-238.11,-137.609,0,-111.72	1/1:177:0,176,0:0:0:176,0:6173,0:-555.418,-52.9813,0,-555.418,-52.9813,-555.418	1/2:66:0,27,39:0:0:27,39:966,1392:-192.611,-113.839,-105.711,-79.1296,0,-67.3894	1/1:81:0,79,1:0:0:79,1:2785,36:-250.553,-23.7814,0,-247.616,-20.819,-247.315	1/2:200:0,92,108:0:0:92,108:3204,3860:-575.558,-315.022,-287.327,-260.829,0,-228.317	1/2:371:0,165,203:0:0:165,203:5831,7284:-1069.05,-594.166,-544.496,-474.903,0,-413.793	1/1:35:0,35,0:0:0:35,0:1253,0:-113.017,-10.5361,0,-113.017,-10.5361,-113.017	1/1:261:0,261,0:0:0:261,0:9256,0:-833.015,-78.5688,0,-833.015,-78.5688,-833.015	1/1:108:0,99,9:0:0:99,9:3471,324:-312.224,-29.802,0,-285.786,-3.00539,-283.077	1/2:195:0,57,138:0:0:57,138:2023,4952:-569.114,-404.286,-387.127,-165.184,0,-123.642	1/2:12:0,8,4:0:0:8,4:281,144:-34.9747,-12.1095,-9.70126,-23.2221,0,-22.018	1/1:35:0,35,0:0:0:35,0:1216,0:-109.74,-10.5361,0,-109.74,-10.5361,-109.74	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:5:0,5,0:0:0:5,0:178,0:-16.3686,-1.50515,0,-16.3686,-1.50515,-16.3686	1/1:28:0,28,0:0:0:28,0:968,0:-87.4295,-8.42884,0,-87.4295,-8.42884,-87.4295	1/1:211:0,211,0:0:0:211,0:7492,0:-674.325,-63.5173,0,-674.325,-63.5173,-674.325	1/2:100:0,39,61:0:0:39,61:1397,2188:-292.694,-178.764,-167.023,-114.23,0,-95.8675	1/2:80:0,49,30:0:0:49,30:1723,1076:-228.009,-87.7622,-73.0117,-140.243,0,-131.212	.:.:.:.:.:.:.:.	1/2:177:0,93,84:0:0:93,84:3291,2970:-510.026,-241.973,-213.978,-268.406,0,-243.12	1/2:36:0,17,19:0:0:17,19:610,684:-105.927,-56.1708,-51.0532,-50.1153,0,-44.3958	1/2:190:0,92,98:0:0:92,98:3246,3508:-550.742,-286.429,-258.735,-264.668,0,-235.167	1/2:66:0,28,38:0:0:28,38:1001,1353:-192.249,-110.629,-102.2,-81.9767,0,-70.5375	1/1:64:0,63,1:0:0:63,1:2184,36:-196.464,-18.9649,0,-193.527,-15.6676,-193.225	1/2:116:0,54,61:0:0:54,61:1869,2178:-329.44,-177.563,-161.307,-151.869,0,-133.506	1/2:167:0,63,104:0:0:63,104:2248,3728:-487.674,-304.413,-285.449,-183.618,0,-152.311	1/2:163:0,61,101:0:0:61,101:2126,3624:-468.521,-295.64,-277.277,-172.913,0,-142.509	1/1:99:0,97,0:0:0:97,0:3444,0:-309.924,-29.1999,0,-309.924,-29.1999,-309.924	1/1:118:0,117,1:0:0:117,1:4150,36:-373.324,-35.2205,0,-370.387,-31.9233,-370.086	1/1:110:0,110,0:0:0:110,0:3916,0:-352.504,-33.1133,0,-352.504,-33.1133,-352.504	1/2:9:0,4,5:0:0:4,5:142,180:-26.6149,-15.0469,-13.8428,-11.9251,0,-10.4199	1/2:241:0,122,119:0:0:122,119:4354,4276:-704.145,-349.194,-312.468,-355.309,0,-319.487	1/2:88:0,36,52:0:0:36,52:1266,1857:-254.803,-151.752,-140.915,-103.405,0,-87.751	1/2:9:0,7,2:0:0:7,2:252,72:-26.7966,-6.23466,-4.12745,-20.9217,0,-20.3197	1/2:202:0,103,99:0:0:103,99:3651,3536:-586.071,-288.648,-257.642,-297.779,0,-267.977	1/2:81:0,40,41:0:0:40,41:1389,1464:-232.623,-119.714,-107.673,-113.261,0,-100.919	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:11:0,10,1:0:0:10,1:356,36:-32.3089,-3.29724,-0.286945,-29.3712,0,-29.0701	1/1:88:0,88,0:0:0:88,0:3102,0:-279.409,-26.4906,0,-279.409,-26.4906,-279.409	1/1:105:0,102,3:0:0:102,3:3641,108:-327.535,-30.7051,0,-318.723,-21.533,-317.82	1/1:3:0,3,0:0:0:3,0:99,0:-9.23658,-0.90309,0,-9.23658,-0.90309,-9.23658	1/2:117:0,45,72:0:0:45,72:1590,2588:-340.923,-211.435,-197.889,-129.785,0,-108.111	1/1:134:0,131,2:0:0:131,2:4655,72:-418.779,-39.4349,0,-412.904,-33.5069,-412.302	1/1:81:0,81,0:0:0:81,0:2871,0:-258.629,-24.3834,0,-258.629,-24.3834,-258.629	1/1:89:0,89,0:0:0:89,0:3168,0:-285.345,-26.7917,0,-285.345,-26.7917,-285.345	1/1:175:0,170,5:0:0:170,5:5991,180:-538.943,-51.1751,0,-524.256,-36.1282,-522.751	1/2:207:0,67,140:0:0:67,140:2366,5010:-601.577,-408.903,-388.734,-193.028,0,-150.884	1/1:65:0,63,1:0:0:63,1:2232,36:-200.824,-18.9649,0,-197.886,-15.9875,-197.585	1/1:112:0,112,0:0:0:112,0:3971,0:-357.584,-33.7154,0,-357.584,-33.7154,-357.584	1/1:47:0,47,0:0:0:47,0:1650,0:-148.786,-14.1484,0,-148.786,-14.1484,-148.786	1/1:23:0,23,0:0:0:23,0:797,0:-72.0459,-6.92369,0,-72.0459,-6.92369,-72.0459	1/1:115:0,114,1:0:0:114,1:4071,36:-366.217,-34.3174,0,-363.279,-31.0202,-362.978	1/2:109:0,51,58:0:0:51,58:1821,2080:-318.412,-169.951,-154.599,-148.759,0,-131.3	1/1:157:0,157,0:0:0:157,0:5561,0:-500.617,-47.2617,0,-500.617,-47.2617,-500.617	1/1:182:0,182,0:0:0:182,0:6422,0:-578.07,-54.7875,0,-578.07,-54.7875,-578.07	1/1:99:0,99,0:0:0:99,0:3480,0:-313.414,-29.802,0,-313.414,-29.802,-313.414	1/1:130:0,127,2:0:0:127,2:4480,72:-402.996,-38.2308,0,-397.121,-32.356,-396.519	1/2:16:0,8,8:0:0:8,8:273,280:-45.279,-23.1311,-20.7228,-22.4934,0,-20.0852	1/1:120:0,120,0:0:0:120,0:4258,0:-383.4,-36.1236,0,-383.4,-36.1236,-383.4	1/2:138:0,55,82:0:0:55,82:1931,2927:-395.774,-238.619,-222.063,-157.148,0,-132.464	1/1:188:0,186,1:0:0:186,1:6593,36:-593.067,-55.9916,0,-590.129,-53.0542,-589.828	1/1:51:0,51,0:0:0:51,0:1816,0:-163.722,-15.3525,0,-163.722,-15.3525,-163.722	1/1:97:0,96,0:0:0:96,0:3418,0:-307.474,-28.8989,0,-307.474,-28.8989,-307.474	1/2:46:0,31,15:0:0:31,15:1048,536:-128.996,-44.0594,-34.7274,-85.2877,0,-80.7723	1/1:150:0,149,0:0:0:149,0:5301,0:-476.869,-44.8535,0,-476.869,-44.8535,-476.869	1/1:19:0,19,0:0:0:19,0:682,0:-61.7099,-5.71957,0,-61.7099,-5.71957,-61.7099	1/2:97:0,49,48:0:0:49,48:1744,1724:-283.129,-140.996,-126.245,-142.49,0,-128.041	1/1:85:0,85,0:0:0:85,0:3000,0:-270.214,-25.5876,0,-270.214,-25.5876,-270.214	1/2:57:0,29,28:0:0:29,28:1029,1000:-165.723,-81.8865,-73.1567,-84.1923,0,-75.7634	1/2:131:0,66,65:0:0:66,65:2347,2328:-381.478,-190.213,-170.345,-191.621,0,-172.054	1/2:97:0,34,62:0:0:34,62:1204,2224:-279.476,-181.4,-171.165,-98.0713,0,-79.4074	1/1:120:0,120,0:0:0:120,0:4211,0:-379.173,-36.1236,0,-379.173,-36.1236,-379.173	1/1:153:0,153,0:0:0:153,0:5408,0:-486.859,-46.0576,0,-486.859,-46.0576,-486.859
chr08	6131994	.	G	C	9115.28	PASS	AB=0.428468;ABP=64.2105;AC=35;AF=0.188172;AN=186;AO=597;CIGAR=1X;DP=3867;DPB=3867;DPRA=0.968081;EPP=1299.38;EPPR=7101.55;GTI=2;LEN=1;MEANALT=1;MQM=59.9816;MQMR=59.985;NS=93;NUMALT=1;ODDS=0.750376;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21327;QR=117079;RO=3269;RPL=597;RPP=1299.38;RPPR=7101.55;RPR=0;RUN=1;SAF=0;SAP=1299.38;SAR=597;SRF=0;SRP=7101.55;SRR=3269;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:139:85,54:85:3044:54:1936:-132.673,0,-232.347	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:11:5,6:5:180:6:210:-15.9306,0,-13.2407	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:55:55,0:55:1958:0:0:0,-16.5566,-176.494	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:31:18,13:18:640:13:464:-32.7656,0,-48.5974	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:125:76,49:76:2708:49:1749:-120.065,0,-206.336	0/1:76:31,45:31:1112:45:1612:-122.492,0,-77.5131	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:146:146,0:146:5221:0:0:0,-43.9504,-470.027	0/0:44:42,2:42:1504:2:72:0,-6.4086,-128.818	0/1:20:13,7:13:460:7:252:-17.0084,0,-35.7148	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:113:112,0:112:4028:0:0:0,-33.7154,-362.347	0/1:54:31,23:31:1108:23:824:-58.2277,0,-83.7754	0/1:22:5,17:5:180:17:608:-48.4294,0,-9.9294	.:.:.:.:.:.:.:.	0/1:37:28,9:28:1000:9:311:-17.1848,0,-79.1773	0/1:21:13,8:13:464:8:284:-19.5817,0,-35.7759	0/1:60:44,16:44:1580:16:576:-34.1132,0,-124.43	0/1:33:15,18:15:536:18:648:-48.7179,0,-38.6408	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:33:14,19:14:500:19:684:-51.9563,0,-35.4022	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	0/1:66:41,25:41:1468:25:892:-60.7317,0,-112.548	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:39:23,16:23:820:16:568:-39.7115,0,-62.3823	0/1:33:25,8:25:896:8:284:-15.9694,0,-71.0264	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:52:35,17:35:1260:17:612:-39.7599,0,-98.0519	0/1:14:8,6:8:280:6:201:-14.2026,0,-21.3249	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/1:101:56,45:56:2016:45:1605:-114.334,0,-151.309	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:64:64,0:64:2280:0:0:0,-19.2659,-204.971	0/1:63:30,33:30:1080:33:1161:-85.8298,0,-78.5484	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.0588	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:44:20,24:20:720:24:854:-63.9337,0,-51.8835	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:49:37,12:37:1328:12:432:-24.4703,0,-105.072	0/0:90:90,0:90:3208:0:0:0,-27.0927,-288.944	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:25:15,10:15:540:10:360:-25.2186,0,-41.4108	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:27:15,12:15:532:12:432:-31.0934,0,-40.0853	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:60:44,16:44:1580:16:576:-34.1132,0,-124.43	0/1:25:5,20:5:180:20:716:-57.242,0,-9.02631	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207
chr08	6155896	.	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chr08	6156019	.	C	T	20619	PASS	AB=0.550859;ABP=51.3828;AC=36;AF=0.193548;AN=186;AO=1198;CIGAR=1X;DP=5791;DPB=5791;DPRA=1.13432;EPP=2604.43;EPPR=9922.36;GTI=1;LEN=1;MEANALT=1;MQM=59.9983;MQMR=59.9863;NS=93;NUMALT=1;ODDS=2.06392;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42908;QR=164100;RO=4592;RPL=0;RPP=2604.43;RPPR=9931.03;RPR=1198;RUN=1;SAF=1198;SAP=2604.43;SAR=0;SRF=4591;SRP=9965.73;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/1:56:28,28:28:1004:28:1008:-74.1787,0,-72.8789	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.607	0/0:63:60,3:60:2145:3:108:0,-8.88972,-183.241	0/0:100:99,1:99:3543:1:36:0,-26.5047,-315.479	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/0:37:37,0:37:1298:0:0:0,-11.1381,-117.117	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:150:150,0:150:5366:0:0:0,-45.1545,-483.071	0/1:41:9,32:9:316:32:1148:-91.2876,0,-16.4366	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/1:95:47,48:47:1680:48:1713:-125.856,0,-122.889	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3671	0/1:238:102,136:102:3600:136:4880:-367.706,0,-252.563	0/1:124:64,60:64:2300:60:2156:-156.979,0,-169.933	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/0:139:137,2:137:4902:2:72:0,-35.0064,-434.494	0/1:90:34,56:34:1216:56:2016:-154.62,0,-82.6539	0/1:4:3,1:3:108:1:30:-1.79545,0,-8.87105	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:2:1,0:1:36:0:0:0,-0.30103,-3.23845	0/0:177:177,0:177:6324:0:0:0,-53.2823,-569.251	0/1:208:94,114:94:3361:114:4081:-304.86,0,-240.091	0/1:49:29,20:29:1036:20:720:-50.3783,0,-78.8034	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:61:26,35:26:928:35:1233:-92.9093,0,-65.4754	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:57:23,34:23:828:34:1201:-91.2349,0,-57.6854	0/1:26:13,13:13:459:13:464:-34.2707,0,-33.8173	0/0:37:37,0:37:1314:0:0:0,-11.1381,-118.56	0/1:112:54,58:54:1936:58:2076:-153.395,0,-140.801	0/1:92:48,44:48:1702:44:1576:-114.437,0,-125.77	0/1:60:27,33:27:953:33:1180:-88.4462,0,-68.0215	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:78:78,0:78:2773:0:0:0,-23.4803,-249.81	0/0:135:135,0:135:4812:0:0:0,-40.639,-433.235	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:53:21,32:21:756:32:1140:-86.9546,0,-52.4126	0/1:43:17,26:17:597:26:936:-71.6152,0,-41.1118	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:63:29,34:29:1040:34:1220:-91.1419,0,-74.9495	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:110:110,0:110:3931:0:0:0,-33.1133,-353.982	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:86:32,54:32:1148:54:1940:-148.988,0,-77.7413	0/0:215:215,0:215:7649:0:0:0,-64.7214,-688.446	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:79:77,2:77:2759:2:72:0,-16.9446,-241.714	0/1:69:8,61:8:288:61:2181:-175.783,0,-5.49634	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.768	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:118:118,0:118:4215:0:0:0,-35.5215,-379.512	0/1:53:25,28:25:900:28:993:-73.7279,0,-65.3664	0/0:134:133,1:133:4784:1:36:0,-36.7397,-427.116	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.078	0/0:37:37,0:37:1304:0:0:0,-11.1381,-117.659	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:46:14,32:14:504:32:1148:-89.7825,0,-31.8507	0/0:137:137,0:137:4896:0:0:0,-41.2411,-440.793	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:42:26,16:26:928:16:576:-39.5317,0,-71.195	0/0:116:116,0:116:4155:0:0:0,-34.9195,-374.132	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:90:50,40:50:1782:40:1440:-102.805,0,-133.569	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	0/1:78:45,33:45:1612:33:1180:-83.0277,0,-121.89	0/1:50:17,33:17:597:33:1180:-91.4565,0,-39.0046	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:43:43,0:43:1526:0:0:0,-12.9443,-137.632
chr08	6162854	.	TACA	TACG,CACG	103045	PASS	AB=0.494265,0.5;ABP=3.55826,3.0103;AC=153,35;AF=0.81383,0.18617;AN=188;AO=3882,964;CIGAR=3M1X,1X2M1X;DP=4874;DPB=4873.5;DPRA=0,1.19338;EPP=8432.67,2096.31;EPPR=5.18177;GTI=0;LEN=1,4;MEANALT=1.69149,2.28205;MQM=60,59.6463;MQMR=60;NS=94;NUMALT=2;ODDS=0.601122;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=136660,33430;QR=36;RO=1;RPL=0,0;RPP=8432.67,2096.31;RPPR=5.18177;RPR=3882,964;RUN=1,1;SAF=0,0;SAP=8432.67,2096.31;SAR=3882,964;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20,0:0:0:20,0:688,0:-62.2375,-6.0206,0,-62.2375,-6.0206,-62.2375	1/1:50:0,50,0:0:0:50,0:1745,0:-157.33,-15.0515,0,-157.33,-15.0515,-157.33	1/2:56:0,26,29:0:0:26,29:924,1011:-157.619,-82.3184,-74.4916,-75.4066,0,-66.6768	1/1:99:0,98,0:0:0:98,0:3456,0:-310.895,-29.5009,0,-310.895,-29.5009,-310.895	1/2:42:0,16,26:0:0:16,26:552,880:-116.527,-71.6812,-66.8647,-45.188,0,-37.3612	1/2:23:0,7,16:0:0:7,16:252,564:-66.838,-46.2738,-44.1665,-20.9217,0,-16.1053	1/1:69:0,68,1:0:0:68,1:2404,36:-216.256,-20.47,0,-213.318,-17.1728,-213.017	1/1:97:0,97,0:0:0:97,0:3399,0:-306.125,-29.1999,0,-306.125,-29.1999,-306.125	1/1:38:0,38,0:0:0:38,0:1336,0:-120.537,-11.4391,0,-120.537,-11.4391,-120.537	1/1:64:0,64,0:0:0:64,0:2275,0:-205.012,-19.2659,0,-205.012,-19.2659,-205.012	1/1:27:0,27,0:0:0:27,0:917,0:-82.8357,-8.12781,0,-82.8357,-8.12781,-82.8357	1/1:34:0,34,0:0:0:34,0:1186,0:-107.043,-10.235,0,-107.043,-10.235,-107.043	1/1:47:0,47,0:0:0:47,0:1652,0:-148.965,-14.1484,0,-148.965,-14.1484,-148.965	1/1:34:0,34,0:0:0:34,0:1162,0:-104.879,-10.235,0,-104.879,-10.235,-104.879	1/1:26:0,26,0:0:0:26,0:901,0:-81.402,-7.82678,0,-81.402,-7.82678,-81.402	1/1:26:0,26,0:0:0:26,0:913,0:-82.4849,-7.82678,0,-82.4849,-7.82678,-82.4849	1/1:25:0,25,0:0:0:25,0:859,0:-77.6207,-7.52575,0,-77.6207,-7.52575,-77.6207	1/1:36:0,36,0:0:0:36,0:1252,0:-112.979,-10.8371,0,-112.979,-10.8371,-112.979	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:101:0,101,0:0:0:101,0:3565,0:-321.057,-30.404,0,-321.057,-30.404,-321.057	1/1:46:0,45,1:0:0:45,1:1575,36:-141.677,-13.5464,0,-138.74,-10.2491,-138.439	1/2:52:0,33,19:0:0:33,19:1165,663:-149.145,-54.2743,-44.3403,-95.221,0,-89.5014	1/1:22:0,22,0:0:0:22,0:784,0:-70.8839,-6.62266,0,-70.8839,-6.62266,-70.8839	1/2:54:0,38,16:0:0:38,16:1337,554:-154.211,-45.3697,-33.9306,-109.189,0,-104.372	1/1:41:0,40,0:0:0:40,0:1423,0:-128.085,-12.0412,0,-128.085,-12.0412,-128.085	1/2:175:1,81,90:1:36:81,90:2797,3081:-474.095,-247.155,-225.709,-224.333,0,-200.178	1/2:133:0,68,64:0:0:68,64:2423,2225:-378.378,-180.876,-160.406,-197.495,0,-178.229	1/1:19:0,19,0:0:0:19,0:672,0:-60.8068,-5.71957,0,-60.8068,-5.71957,-60.8068	1/1:151:0,150,0:0:0:150,0:5305,0:-477.226,-45.1545,0,-477.226,-45.1545,-477.226	1/1:25:0,25,0:0:0:25,0:869,0:-78.5239,-7.52575,0,-78.5239,-7.52575,-78.5239	1/2:64:0,24,40:0:0:24,40:856,1371:-181.422,-111.637,-104.412,-70.1364,0,-58.0952	1/2:13:0,10,3:0:0:10,3:351,108:-37.7307,-9.17208,-6.16178,-28.9164,0,-28.0133	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:13:0,12,0:0:0:12,0:423,0:-38.1472,-3.61236,0,-38.1472,-3.61236,-38.1472	1/1:97:0,96,0:0:0:96,0:3387,0:-304.795,-28.8989,0,-304.795,-28.8989,-304.795	1/2:124:0,55,69:0:0:55,69:1920,2396:-350.95,-194.782,-178.226,-156.515,0,-135.744	1/2:28:0,15,13:0:0:15,13:523,461:-80.4441,-37.9128,-33.3973,-42.883,0,-38.9696	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:110:0,63,47:0:0:63,47:2250,1641:-317.269,-133.822,-114.858,-183.799,0,-169.65	1/2:18:0,9,9:0:0:9,9:320,310:-51.6024,-25.5192,-22.8099,-26.4331,0,-23.7238	1/2:60:0,20,40:0:0:20,40:708,1386:-170.658,-112.984,-106.964,-58.025,0,-45.9838	1/2:32:0,8,24:0:0:8,24:280,826:-90.2124,-67.4298,-65.0215,-23.1311,0,-15.9063	1/1:34:0,34,0:0:0:34,0:1211,0:-109.296,-10.235,0,-109.296,-10.235,-109.296	1/2:114:0,51,61:0:0:51,61:1816,2132:-321.17,-173.154,-157.801,-148.009,0,-129.646	1/2:60:0,30,30:0:0:30,30:1064,1031:-170.754,-84.0627,-75.0318,-87.0408,0,-78.0099	1/2:99:0,64,35:0:0:64,35:2287,1225:-286.449,-99.9761,-80.7102,-186.825,0,-176.289	1/1:54:0,53,0:0:0:53,0:1874,0:-168.725,-15.9546,0,-168.725,-15.9546,-168.725	1/1:65:0,65,0:0:0:65,0:2306,0:-207.8,-19.567,0,-207.8,-19.567,-207.8	1/1:182:0,180,0:0:0:180,0:6395,0:-575.283,-54.1854,0,-575.283,-54.1854,-575.283	1/2:9:0,5,4:0:0:5,4:171,140:-25.6145,-11.7405,-10.2353,-14.2203,0,-13.0162	1/2:97:0,43,52:0:0:43,52:1527,1794:-270.199,-145.771,-132.827,-124.471,0,-108.817	1/2:12:0,8,4:0:0:8,4:288,133:-34.6111,-11.0935,-8.68523,-23.8592,0,-22.655	1/2:19:0,13,6:0:0:13,6:464,205:-54.8077,-16.9698,-13.0564,-38.1841,0,-36.3779	1/2:68:0,38,29:0:0:38,29:1324,1004:-189.25,-81.5793,-70.1402,-107.658,0,-98.9283	1/2:24:0,16,8:0:0:16,8:568,273:-68.7822,-22.4925,-17.6761,-46.6354,0,-44.2271	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-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chr08	6162890	.	A	G	15685.6	PASS	AB=0.495317;ABP=3.37635;AC=35;AF=0.18617;AN=188;AO=955;CIGAR=1X;DP=4913;DPB=4913;DPRA=1.09468;EPP=2068.09;EPPR=8547.81;GTI=0;LEN=1;MEANALT=1.02632;MQM=59.6702;MQMR=59.981;NS=94;NUMALT=1;ODDS=1.27701;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33970;QR=141671;RO=3955;RPL=954;RPP=2068.09;RPPR=8547.81;RPR=1;RUN=1;SAF=0;SAP=2076.77;SAR=955;SRF=0;SRP=8591.18;SRR=3955;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:50:49,1:49:1760:1:36:0,-11.4532,-155.086	0/1:55:26,29:26:936:29:1042:-77.5329,0,-68.0028	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.945	0/1:41:16,25:16:576:25:900:-68.9788,0,-39.8328	0/1:26:10,16:10:356:16:568:-43.6251,0,-24.5545	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:64:63,1:63:2253:1:36:0,-15.6676,-199.433	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:104:104,0:104:3704:0:0:0,-31.3071,-333.561	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/1:51:32,19:32:1137:19:675:-45.7244,0,-87.2844	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:53:38,15:38:1345:15:540:-32.9819,0,-105.394	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:175:86,89:86:3072:89:3140:-230.084,0,-224.029	0/1:132:68,64:68:2432:64:2287:-166.342,0,-179.4	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:152:152,0:152:5443:0:0:0,-45.7566,-489.998	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:64:25,39:25:892:39:1392:-106.226,0,-61.3338	0/1:13:10,3:10:351:3:108:-6.16178,0,-28.0133	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/1:126:58,68:58:2069:68:2417:-179.822,0,-148.549	0/1:30:17,13:17:612:13:464:-33.0666,0,-46.3825	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:108:61,47:61:2192:47:1662:-117.35,0,-165.034	0/1:18:9,9:9:324:9:324:-24.0791,0,-24.0873	0/1:61:21,40:21:748:40:1411:-108.906,0,-49.2825	0/1:33:8,25:8:288:25:882:-69.7626,0,-16.3334	0/0:35:34,0:34:1216:0:0:0,-10.235,-109.387	0/1:114:51,63:51:1816:63:2234:-166.958,0,-129.404	0/1:61:31,30:31:1097:30:1072:-78.4215,0,-80.6752	0/1:98:64,34:64:2292:34:1217:-80.3127,0,-177.04	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.4	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:186:186,0:186:6675:0:0:0,-55.9916,-600.824	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:96:44,52:44:1584:52:1829:-135.982,0,-113.953	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/1:19:13,6:13:468:6:212:-13.7019,0,-36.7401	0/1:71:39,31:39:1400:31:1103:-78.1465,0,-104.867	0/1:22:15,7:15:540:7:248:-16.0415,0,-42.3139	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:17:9,8:9:320:8:284:-20.7836,0,-24.0248	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:106:60,46:60:2140:46:1635:-115.529,0,-160.959	0/0:131:131,0:131:4692:0:0:0,-39.4349,-422.44	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:76:31,45:31:1108:45:1608:-122.127,0,-77.1527	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.79	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:58:57,0:57:2036:0:0:0,-17.1587,-183.192	0/1:23:12,11:12:432:11:384:-27.971,0,-32.2975	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.818	0/0:58:57,1:57:2048:1:36:0,-13.8615,-180.993	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:44:20,24:20:705:24:860:-64.4449,0,-50.5275	0/0:178:178,0:178:6372:0:0:0,-53.5833,-573.567	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:32:11,21:11:392:21:752:-58.3709,0,-25.9871	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:34:18,16:18:648:16:568:-41.2168,0,-48.4169	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.639	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:55:28,27:28:1004:27:964:-70.5202,0,-74.1192	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.4848	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182
chr08	6162897	.	T	C	15696.5	PASS	AB=0.49506;ABP=3.41795;AC=35;AF=0.18617;AN=188;AO=954;CIGAR=1X;DP=4922;DPB=4922;DPRA=1.21274;EPP=2074.59;EPPR=8599.88;GTI=0;LEN=1;MEANALT=1;MQM=59.652;MQMR=59.9771;NS=94;NUMALT=1;ODDS=1.3557;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34024;QR=142072;RO=3967;RPL=954;RPP=2074.59;RPPR=8599.88;RPR=0;RUN=1;SAF=0;SAP=2074.59;SAR=954;SRF=0;SRP=8617.24;SRR=3967;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:55:26,29:26:936:29:1036:-76.9891,0,-68.0028	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.347	0/1:43:17,26:17:612:26:924:-70.5334,0,-42.4691	0/1:26:10,16:10:356:16:568:-43.6251,0,-24.5545	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:99:99,0:99:3510:0:0:0,-29.802,-316.086	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:51:33,18:33:1169:18:648:-43.2994,0,-90.1628	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/1:52:37,15:37:1332:15:528:-32.1978,0,-104.529	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:175:85,90:85:3056:90:3213:-236.665,0,-222.588	0/1:131:67,64:67:2392:64:2284:-166.374,0,-176.103	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:152:152,0:152:5441:0:0:0,-45.7566,-489.817	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:62:24,38:24:860:38:1349:-103.044,0,-59.058	0/1:14:11,3:11:377:3:108:-5.86075,0,-30.0435	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:127:58,69:58:2088:69:2456:-182.149,0,-149.959	0/1:30:17,13:17:608:13:468:-33.4287,0,-46.0211	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:108:62,46:62:2224:46:1643:-115.641,0,-167.913	0/1:18:9,9:9:324:9:315:-23.2604,0,-24.0873	0/1:62:20,42:20:720:42:1496:-116.253,0,-46.4649	0/1:33:8,25:8:288:25:890:-70.484,0,-16.3334	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/1:115:54,61:54:1928:61:2184:-162.083,0,-139.178	0/1:61:31,30:31:1116:30:1072:-78.4215,0,-82.3889	0/1:99:65,34:65:2325:34:1210:-79.3846,0,-179.706	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.145	0/0:185:185,0:185:6617:0:0:0,-55.6905,-595.608	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:98:45,53:45:1612:53:1896:-141.409,0,-115.869	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:71:39,32:39:1404:32:1140:-81.5361,0,-105.286	0/1:23:15,8:15:536:8:288:-19.3413,0,-41.6511	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:17:9,8:9:324:8:269:-19.4168,0,-24.3883	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:105:60,45:60:2148:45:1604:-113.042,0,-161.979	0/0:131:131,0:131:4712:0:0:0,-39.4349,-424.237	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:76:29,47:29:1029:47:1667:-127.427,0,-70.0429	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.192	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/0:75:74,0:74:2637:0:0:0,-22.2762,-237.16	0/0:61:61,0:61:2161:0:0:0,-18.3628,-194.756	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:44:20,24:20:716:24:860:-64.4683,0,-51.5224	0/0:179:178,1:178:6352:1:36:0,-50.2861,-568.175	0/0:66:65,1:65:2328:1:36:0,-16.2697,-206.182	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:32:11,21:11:396:21:752:-58.3709,0,-26.3498	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:36:19,17:19:680:17:612:-44.5764,0,-50.6921	0/0:43:43,0:43:1548:0:0:0,-12.9443,-138.985	0/1:22:15,7:15:536:7:252:-16.4063,0,-41.9522	0/1:55:29,26:29:1044:26:932:-67.6422,0,-77.7182	0/1:17:7,10:7:252:10:352:-26.9007,0,-17.9114	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061
chr08	6174886	.	G	A	108851	PASS	AB=0.597238;ABP=151.659;AC=153;AF=0.81383;AN=188;AO=4956;CIGAR=1X;DP=5689;DPB=5689;DPRA=0;EPP=10764.8;EPPR=1575.2;GTI=2;LEN=1;MEANALT=1.01064;MQM=59.9651;MQMR=59.7678;NS=94;NUMALT=1;ODDS=0.985408;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177395;QR=26308;RO=732;RPL=4956;RPP=10764.8;RPPR=1575.2;RPR=0;RUN=1;SAF=0;SAP=10764.8;SAR=4956;SRF=0;SRP=1592.53;SRR=732;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0	1/1:103:0,103:0:0:103:3671:-330.594,-31.0061,0	0/1:72:25,47:25:900:47:1669:-128.821,0,-59.6469	1/1:87:0,87:0:0:87:3116:-280.667,-26.1896,0	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/1:30:10,20:10:356:20:709:-55.1038,0,-23.3503	1/1:122:0,122:0:0:122:4372:-393.653,-36.7257,0	1/1:86:0,86:0:0:86:3065:-276.026,-25.8886,0	1/1:99:0,99:0:0:99:3540:-318.809,-29.802,0	1/1:102:0,102:0:0:102:3668:-330.322,-30.7051,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:49:0,49:0:0:49:1748:-157.604,-14.7505,0	1/1:86:0,86:0:0:86:3080:-277.428,-25.8886,0	1/1:63:0,63:0:0:63:2251:-202.852,-18.9649,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:78:1,77:1:36:77:2768:-245.762,-19.8821,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:73:0,73:0:0:73:2604:-234.607,-21.9752,0	0/1:55:28,27:28:1004:27:968:-70.8807,0,-74.1192	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:95:37,58:37:1328:58:2059:-156.981,0,-91.2244	1/1:63:0,63:0:0:63:2264:-203.395,-18.9649,0	0/1:128:64,64:64:2304:64:2300:-168.728,0,-169.071	0/1:117:46,71:46:1648:71:2539:-193.54,0,-113.388	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:98:0,98:0:0:98:3486:-313.949,-29.5009,0	1/1:77:1,76:1:36:76:2708:-240.366,-19.581,0	0/1:48:20,28:20:720:28:1000:-75.8659,0,-50.6793	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:144:0,143:0:0:143:5118:-460.401,-43.0473,0	0/1:73:25,48:25:900:48:1728:-133.83,0,-59.3458	0/1:54:16,38:16:576:38:1368:-107.165,0,-35.9194	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:64:18,46:18:648:46:1639:-128.532,0,-39.386	0/1:41:15,26:15:540:26:936:-72.2172,0,-36.5943	0/1:53:20,33:20:720:33:1184:-90.9137,0,-49.1742	0/1:58:24,34:24:860:34:1201:-90.9339,0,-60.1321	1/1:53:0,53:0:0:53:1886:-169.932,-15.9546,0	0/1:45:20,25:20:716:25:896:-67.414,0,-51.2214	0/1:47:21,26:21:752:26:936:-70.4111,0,-53.8569	0/1:82:34,48:34:1224:48:1728:-131.121,0,-85.733	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	1/1:109:0,109:0:0:109:3908:-351.913,-32.8123,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:44:21,23:21:756:23:828:-61.5988,0,-54.3419	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:59:23,36:23:828:36:1281:-97.8314,0,-57.0833	0/1:23:5,18:5:180:18:644:-51.3669,0,-9.62837	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:47:0,47:0:0:47:1677:-151.215,-14.1484,0	1/1:101:1,100:1:36:100:3579:-318.718,-26.8058,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:106:40,66:40:1440:66:2372:-181.829,0,-97.9885	1/1:99:0,99:0:0:99:3543:-319.077,-29.802,0	1/1:72:0,72:0:0:72:2557:-230.377,-21.6742,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:70:0,70:0:0:70:2502:-225.415,-21.0721,0	0/1:68:47,21:47:1684:21:752:-47.5362,0,-130.946	1/1:31:0,31:0:0:31:1112:-100.346,-9.33193,0	1/1:80:0,80:0:0:80:2876:-259.068,-24.0824,0	1/1:64:0,64:0:0:64:2287:-206.091,-19.2659,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	0/1:52:17,35:17:612:35:1260:-98.0473,0,-39.7599	1/1:104:0,104:0:0:104:3704:-333.561,-31.3071,0	1/1:81:0,81:0:0:81:2908:-261.869,-24.3834,0	1/1:103:0,103:0:0:103:3694:-332.662,-31.0061,0	1/1:70:0,70:0:0:70:2493:-224.622,-21.0721,0	0/1:14:2,12:2:72:12:432:-35.0059,0,-2.6223	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:49:18,31:18:648:31:1097:-84.2875,0,-43.8927	1/1:136:0,136:0:0:136:4879:-439.257,-40.9401,0	1/1:86:0,86:0:0:86:3069:-276.438,-25.8886,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	0/1:64:25,39:25:900:39:1392:-106.313,0,-62.0523	1/1:108:0,108:0:0:108:3858:-347.415,-32.5112,0	1/1:38:0,38:0:0:38:1356:-122.339,-11.4391,0	0/1:42:13,29:13:468:29:1044:-81.6315,0,-29.8164	1/1:71:0,71:0:0:71:2556:-230.29,-21.3731,0	0/1:50:18,32:18:648:32:1152:-88.9386,0,-43.4702	0/1:55:15,40:15:540:40:1436:-112.981,0,-32.3799	0/1:59:31,28:31:1116:28:1004:-72.9151,0,-82.9848	1/1:32:0,32:0:0:32:1131:-102.098,-9.63296,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0
chr08	6189300	.	A	T	12332.4	PASS	AB=0.505183;ABP=3.34795;AC=36;AF=0.193548;AN=186;AO=737;CIGAR=1X;DP=3891;DPB=3891;DPRA=1.03919;EPP=1586.06;EPPR=6806.28;GTI=1;LEN=1;MEANALT=1.02703;MQM=60;MQMR=59.9994;NS=93;NUMALT=1;ODDS=5.26542;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26350;QR=111120;RO=3149;RPL=2;RPP=1586.06;RPPR=6806.28;RPR=735;RUN=1;SAF=737;SAP=1603.39;SAR=0;SRF=3149;SRP=6840.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1885:0:0:0,-16.2556,-169.924	0/0:26:26,0:26:902:0:0:0,-7.82678,-81.4903	0/1:62:38,24:38:1328:24:856:-58.6972,0,-101.153	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.04	0/1:29:15,14:15:528:14:504:-36.9682,0,-39.1215	0/1:27:18,9:18:644:9:320:-21.0145,0,-50.1628	0/0:62:62,0:62:2150:0:0:0,-18.6639,-193.763	0/0:65:65,0:65:2275:0:0:0,-19.5669,-205.008	0/0:39:39,0:39:1377:0:0:0,-11.7402,-124.227	0/0:41:41,0:41:1422:0:0:0,-12.3422,-128.272	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:65:64,1:64:2262:1:21:0,-17.467,-201.74	0/0:72:72,0:72:2523:0:0:0,-21.6742,-227.319	0/1:67:22,45:22:769:45:1616:-125.561,0,-49.3596	0/0:51:51,0:51:1801:0:0:0,-15.3525,-162.37	0/1:29:18,11:18:640:11:396:-27.2529,0,-49.1994	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:105:59,46:59:2065:46:1643:-116.55,0,-154.509	0/1:92:57,35:57:2028:35:1241:-84.2977,0,-155.098	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:88:88,0:88:3045:0:0:0,-26.4906,-274.278	0/0:52:52,0:52:1826:0:0:0,-15.6536,-164.616	0/1:54:29,24:29:1040:24:852:-60.6862,0,-77.6	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:108:106,0:106:3788:0:0:0,-31.9092,-340.803	0/1:80:41,39:41:1460:39:1400:-102.217,0,-107.614	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:64:33,31:33:1176:31:1100:-80.0444,0,-86.8818	0/1:23:16,7:16:568:7:252:-16.1053,0,-44.5282	0/1:68:33,35:33:1150:35:1260:-93.2354,0,-83.3319	0/1:30:13,17:13:445:17:612:-46.3825,0,-31.3445	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/1:56:20,36:20:696:36:1292:-99.7261,0,-46.1047	0/1:44:15,29:15:525:29:1040:-80.669,0,-34.3327	0/1:86:40,46:40:1389:46:1648:-122.72,0,-99.4163	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/0:36:36,0:36:1243:0:0:0,-10.8371,-112.166	0/0:49:48,0:48:1712:0:0:0,-14.4494,-154.006	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:52:23,29:23:824:29:1036:-77.9004,0,-58.8298	0/1:16:10,6:10:348:6:216:-14.974,0,-26.8387	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:46:22,24:22:754:24:852:-63.153,0,-54.3259	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:62:62,0:62:2197:0:0:0,-18.6639,-197.994	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:57:33,24:33:1138:24:864:-60.9239,0,-85.5624	0/0:68:67,1:67:2339:1:21:0,-18.3701,-208.666	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:35:35,0:35:1206:0:0:0,-10.536,-108.839	0/0:101:101,0:101:3498:0:0:0,-30.404,-315.035	0/1:69:22,47:22:732:47:1677:-130.444,0,-45.4134	0/0:10:10,0:10:337:0:0:0,-3.0103,-30.6547	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:102:102,0:102:3629:0:0:0,-30.7051,-326.815	0/1:23:14,9:14:489:9:320:-22.2187,0,-37.4152	0/0:76:76,0:76:2679:0:0:0,-22.8783,-241.352	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:49:49,0:49:1718:0:0:0,-14.7505,-154.901	0/0:19:18,0:18:648:0:0:0,-5.41854,-58.434	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:26:26,0:26:901:0:0:0,-7.82678,-81.4022	0/1:26:16,10:16:572:10:356:-24.5545,0,-43.9866	0/0:118:118,0:118:4128:0:0:0,-35.5215,-371.706	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:18:11,7:11:388:7:252:-17.6104,0,-29.8388	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:48:24,24:24:864:24:864:-63.6331,0,-63.6331	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	0/1:50:24,26:24:848:26:932:-69.1474,0,-61.5882	0/1:45:12,33:12:416:33:1188:-93.6822,0,-24.2253	0/0:48:48,0:48:1697:0:0:0,-14.4494,-153.014	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78
chr08	6204083	.	T	C	148038	PASS	AB=0.457159;ABP=60.1298;AC=150;AF=0.806452;AN=186;AO=6913;CIGAR=1X;DP=8869;DPB=8869;DPRA=48.1902;EPP=15014.4;EPPR=4241.72;GTI=3;LEN=1;MEANALT=1.04348;MQM=59.2939;MQMR=59.8253;NS=93;NUMALT=1;ODDS=1.46518;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246692;QR=69983;RO=1952;RPL=0;RPP=15014.4;RPPR=4241.72;RPR=6913;RUN=1;SAF=6913;SAP=15014.4;SAR=0;SRF=1952;SRP=4241.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:709:-64.1341,-6.0206,0	1/1:189:0,189:0:0:189:6767:-608.291,-56.8947,0	0/1:134:63,71:63:2256:71:2537:-187.673,0,-162.963	1/1:153:0,152:0:0:152:5432:-488.577,-45.7566,0	0/1:43:20,23:20:720:23:820:-61.1769,0,-52.1845	0/1:45:28,17:28:1008:17:604:-41.1266,0,-77.49	1/1:134:0,134:0:0:134:4798:-431.894,-40.338,0	1/1:213:0,213:0:0:213:7578:-681.706,-64.1194,0	1/1:103:0,103:0:0:103:3628:-326.396,-31.0061,0	1/1:107:0,107:0:0:107:3815:-343.527,-32.2102,0	1/1:36:0,36:0:0:36:1283:-115.766,-10.8371,0	1/1:64:0,64:0:0:64:2272:-204.691,-19.2659,0	1/1:44:0,44:0:0:44:1554:-140.13,-13.2453,0	1/1:53:0,53:0:0:53:1896:-170.86,-15.9546,0	1/1:63:0,63:0:0:63:2260:-203.623,-18.9649,0	1/1:44:0,44:0:0:44:1563:-140.59,-13.2453,0	1/1:49:0,49:0:0:49:1764:-158.616,-14.7505,0	1/1:46:0,46:0:0:46:1625:-146.142,-13.8474,0	1/1:28:0,28:0:0:28:998:-90.1099,-8.42884,0	1/1:130:0,130:0:0:130:4619:-415.624,-39.1339,0	1/1:134:0,134:0:0:134:4774:-429.72,-40.338,0	0/1:163:106,57:106:3816:57:2024:-133.277,0,-294.428	1/1:42:0,42:0:0:42:1504:-135.644,-12.6433,0	0/1:111:46,65:46:1644:65:2336:-177.014,0,-114.826	1/1:78:0,78:0:0:78:2795:-251.721,-23.4803,0	0/1:341:209,132:209:7493:132:4723:-322.012,0,-571.671	0/1:281:123,158:123:4420:158:5656:-424.062,0,-313.275	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:205:0,205:0:0:205:7292:-656.138,-61.7112,0	1/1:151:0,150:0:0:150:5364:-481.757,-45.1545,0	0/1:117:77,40:77:2772:40:1432:-93.8204,0,-214.497	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:14:0,14:0:0:14:504:-45.6972,-4.21442,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:9:0,9:0:0:9:324:-29.4976,-2.70927,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:195:0,195:0:0:195:6975:-627.721,-58.7009,0	0/1:248:128,119:128:4596:119:4228:-305.513,0,-339.071	0/1:59:33,26:33:1188:26:923:-65.3004,0,-89.4641	.:.:.:.:.:.:.:.	0/1:137:92,45:92:3280:45:1612:-104.104,0,-254.177	0/1:27:11,16:11:396:16:572:-43.5553,0,-27.8549	0/1:135:68,67:68:2444:67:2392:-174.876,0,-179.575	0/1:49:32,17:32:1148:17:612:-40.663,0,-88.7732	1/1:52:0,52:0:0:52:1867:-168.293,-15.6536,0	0/1:120:61,59:61:2184:59:2104:-153.436,0,-160.702	0/1:153:61,92:61:2165:92:3280:-248.502,0,-149.057	0/1:303:186,117:186:6654:117:4154:-282.755,0,-507.612	1/1:146:0,146:0:0:146:5232:-470.368,-43.9504,0	1/1:94:0,94:0:0:94:3368:-303.322,-28.2968,0	1/1:206:0,206:0:0:206:7341:-659.229,-62.0122,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:220:115,105:115:4128:105:3759:-272.116,0,-305.436	0/1:37:22,15:22:788:15:536:-37.4358,0,-60.1067	0/1:10:8,2:8:284:2:68:-3.44741,0,-22.8931	0/1:97:58,39:58:2080:39:1395:-96.6403,0,-158.27	0/1:59:35,24:35:1256:24:860:-59.3322,0,-95.5739	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:83:0,83:0:0:83:2980:-268.235,-24.9855,0	1/1:94:0,94:0:0:94:3366:-303.084,-28.2968,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:127:53,74:53:1900:74:2628:-198.532,0,-133.042	1/1:112:1,111:1:36:111:3972:-354.026,-30.1171,0	1/1:119:0,119:0:0:119:4252:-382.381,-35.8226,0	1/1:54:0,54:0:0:54:1930:-173.961,-16.2556,0	1/1:176:3,173:3:108:173:6163:-544.289,-42.9061,0	0/1:149:92,57:92:3292:57:2044:-139.363,0,-251.488	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:124:0,124:0:0:124:4411:-396.302,-37.3277,0	1/1:73:2,71:2:72:71:2531:-220.448,-15.1385,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:165:0,164:0:0:164:5840:-524.8,-49.3689,0	0/1:78:38,40:38:1360:40:1428:-105.046,0,-99.19	1/1:216:0,216:0:0:216:7660:-689.295,-65.0225,0	1/1:187:0,187:0:0:187:6659:-599.102,-56.2926,0	1/1:86:0,86:0:0:86:3063:-275.231,-25.8886,0	1/1:96:0,96:0:0:96:3439:-309.655,-28.8989,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:108:0,108:0:0:108:3876:-348.999,-32.5112,0	0/1:56:29,27:29:1044:27:960:-69.8525,0,-77.4171	1/1:239:0,239:0:0:239:8514:-766.118,-71.9462,0	1/1:101:0,101:0:0:101:3624:-326.332,-30.404,0	1/1:39:0,39:0:0:39:1396:-125.93,-11.7402,0	0/1:51:20,31:20:720:31:1112:-85.0365,0,-49.7762	1/1:133:0,133:0:0:133:4737:-426.315,-40.037,0	1/1:28:0,28:0:0:28:1004:-90.5417,-8.42884,0	0/1:60:31,29:31:1116:29:1036:-75.4921,0,-82.6569	1/1:37:0,37:0:0:37:1324:-119.435,-11.1381,0	0/1:30:16,14:16:567:14:500:-36.2685,0,-42.3298	0/1:71:35,36:35:1260:36:1280:-94.0522,0,-92.3147	0/1:53:35,18:35:1248:18:644:-42.336,0,-96.6703	1/1:74:0,74:0:0:74:2648:-238.534,-22.2762,0	1/1:77:0,77:0:0:77:2751:-247.803,-23.1793,0
chr08	6206041	.	G	T	31361.4	PASS	AB=0.516364;ABP=11.3251;AC=37;AF=0.196809;AN=188;AO=1860;CIGAR=1X;DP=8421;DPB=8421;DPRA=1.30038;EPP=4041.95;EPPR=14237;GTI=3;LEN=1;MEANALT=1.04878;MQM=59.6538;MQMR=59.6362;NS=94;NUMALT=1;ODDS=0.553547;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66314;QR=233541;RO=6559;RPL=0;RPP=4041.95;RPPR=14228.3;RPR=1860;RUN=1;SAF=0;SAP=4041.95;SAR=1860;SRF=1;SRP=14237;SRR=6558;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.603	0/0:143:143,0:143:5048:0:0:0,-43.0473,-454.08	0/1:126:57,69:57:2002:69:2462:-183.767,0,-141.219	0/0:188:188,0:188:6722:0:0:0,-56.5936,-604.941	0/1:108:60,48:60:2143:48:1720:-122.56,0,-160.545	0/1:53:24,29:24:864:29:1040:-77.9516,0,-62.128	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:146:145,1:145:5190:1:36:0,-40.3521,-463.598	0/0:84:84,0:84:2990:0:0:0,-25.2865,-269.055	0/0:121:121,0:121:4331:0:0:0,-36.4246,-389.86	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.969	0/0:49:49,0:49:1738:0:0:0,-14.7505,-156.544	0/0:62:62,0:62:2193:0:0:0,-18.6639,-197.61	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.988	0/0:37:37,0:37:1299:0:0:0,-11.1381,-117.14	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5429	0/0:46:46,0:46:1633:0:0:0,-13.8474,-147.243	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.744	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3534	0/0:186:186,0:186:6602:0:0:0,-55.9916,-594.219	0/0:126:126,0:126:4499:0:0:0,-37.9298,-405.068	0/1:145:48,97:48:1701:97:3460:-267.959,0,-109.719	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.111	0/1:122:62,60:62:2220:60:2129:-155.14,0,-163.334	0/0:76:76,0:76:2697:0:0:0,-22.8783,-241.875	0/1:358:169,189:169:6007:189:6711:-496.293,0,-432.926	0/1:169:99,70:99:3523:70:2500:-174.314,0,-266.262	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3064	0/0:268:268,0:268:9563:0:0:0,-80.676,-860.241	0/0:102:101,1:101:3605:1:36:0,-27.1068,-321.032	0/1:90:44,46:44:1584:46:1652:-121.873,0,-115.759	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7071	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9765	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:153:153,0:153:5423:0:0:0,-46.0576,-487.641	0/1:260:105,155:105:3714:155:5528:-419.277,0,-256.145	0/1:54:24,30:24:855:30:1068:-80.1621,0,-61.0146	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:171:107,64:107:3835:64:2284:-154.335,0,-293.839	0/1:29:19,10:19:665:10:360:-24.0144,0,-51.4337	0/1:155:70,85:70:2512:85:3056:-228.58,0,-179.658	0/1:29:22,7:22:792:7:239:-13.111,0,-62.8711	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.891	0/1:141:77,64:77:2741:64:2286:-163.518,0,-204.292	0/1:131:57,74:57:2016:74:2618:-196.406,0,-142.25	0/1:187:109,78:109:3881:78:2796:-195.489,0,-292.745	0/0:129:129,0:129:4610:0:0:0,-38.8329,-415.044	0/0:118:118,0:118:4215:0:0:0,-35.5215,-379.52	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.755	0/1:8:4,4:4:140:4:143:-10.8113,0,-10.5363	0/1:142:72,70:72:2567:70:2496:-182.145,0,-188.511	0/1:61:33,27:33:1175:27:959:-68.1956,0,-86.8553	0/1:19:14,5:14:500:5:176:-10.4654,0,-39.6166	0/1:138:74,64:74:2639:64:2284:-164.257,0,-196.196	0/1:34:24,10:24:856:10:356:-22.1429,0,-67.0387	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.211	0/0:80:76,3:76:2709:3:108:0,-14.0658,-233.971	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:232:109,123:109:3876:123:4420:-328.059,0,-279.195	0/0:151:151,0:151:5378:0:0:0,-45.4555,-484.104	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.42	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.874	0/0:128:128,0:128:4540:0:0:0,-38.5318,-408.749	0/1:170:62,108:62:2203:108:3838:-294.433,0,-147.357	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.334	0/0:77:77,0:77:2732:0:0:0,-23.1793,-246.075	0/0:67:67,0:67:2363:0:0:0,-20.169,-212.919	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3649	0/0:105:103,2:103:3689:2:68:0,-25.1539,-325.714	0/1:73:25,48:25:885:48:1695:-130.846,0,-57.9832	0/0:129:129,0:129:4608:0:0:0,-38.8329,-413.921	0/0:164:164,0:164:5828:0:0:0,-49.3689,-524.628	0/0:115:115,0:115:4107:0:0:0,-34.6184,-369.788	0/0:105:105,0:105:3744:0:0:0,-31.6081,-337.135	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/0:146:146,0:146:5232:0:0:0,-43.9504,-470.979	0/1:88:31,57:31:1085:57:2025:-155.752,0,-71.4497	0/0:209:208,1:208:7392:1:36:0,-59.317,-661.621	0/0:87:87,0:87:3096:0:0:0,-26.1896,-278.864	0/0:50:50,0:50:1752:0:0:0,-15.0515,-157.932	0/1:41:19,22:19:671:22:788:-58.9026,0,-48.3694	0/0:98:98,0:98:3476:0:0:0,-29.5009,-313.042	0/0:29:29,0:29:998:0:0:0,-8.72987,-90.1175	0/1:51:22,29:22:780:29:1018:-76.5776,0,-55.1623	0/0:57:57,0:57:2016:0:0:0,-17.1587,-181.704	0/1:38:21,17:21:752:17:608:-43.6129,0,-56.5671	0/1:77:32,45:32:1135:45:1608:-121.831,0,-79.2742	0/1:45:15,30:15:536:30:1063:-82.4345,0,-35.0238	0/0:89:89,0:89:3178:0:0:0,-26.7917,-285.54	0/0:62:62,0:62:2196:0:0:0,-18.6639,-197.896
chr08	6206051	.	TCG	CCC,TCC	188939	PASS	AB=0.481002,0.515419;ABP=14.3962,10.51;AC=151,37;AF=0.803191,0.196809;AN=188;AO=6611,1891;CIGAR=1X1M1X,2M1X;DP=8533;DPB=8533.67;DPRA=18.3398,1.33781;EPP=13052.1,3894.99;EPPR=0;GTI=3;LEN=3,1;MEANALT=1.82796,2.29787;MQM=59.6309,59.7287;MQMR=0;NS=94;NUMALT=2;ODDS=0.874737;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=36,0;PQR=0;PRO=0;QA=232615,67498;QR=0;RO=0;RPL=6457,1866;RPP=13052.1,3894.99;RPPR=0;RPR=154,25;RUN=1,1;SAF=0,0;SAP=14358.6,4109.26;SAR=6611,1891;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50,0:0:0:50,0:1775,0:-160.024,-15.0515,0,-160.024,-15.0515,-160.024	1/1:144:0,143,0:0:0:143,0:5009,0:-450.468,-43.0473,0,-450.468,-43.0473,-450.468	1/2:128:0,56,71:0:0:56,71:1952,2556:-366.71,-208.368,-191.51,-158.337,0,-136.964	1/1:190:0,189,1:0:0:189,1:6615,36:-594.974,-56.8947,0,-592.036,-53.5974,-591.735	1/2:111:0,60,51:0:0:60,51:2096,1821:-319.148,-148.803,-130.741,-170.698,0,-155.346	1/2:53:0,24,29:0:0:24,29:852,1044:-154.955,-85.5368,-78.312,-69.7753,0,-61.0454	1/1:91:0,89,2:0:0:89,2:3153,72:-283.634,-26.7917,0,-277.759,-20.557,-277.157	1/1:146:0,145,1:0:0:145,1:5117,36:-460.276,-43.6494,0,-457.338,-40.3521,-457.037	1/1:86:0,85,0:0:0:85,0:2986,0:-268.503,-25.5876,0,-268.503,-25.5876,-268.503	1/1:121:0,119,0:0:0:119,0:4200,0:-377.799,-35.8226,0,-377.799,-35.8226,-377.799	1/1:49:0,49,0:0:0:49,0:1719,0:-154.984,-14.7505,0,-154.984,-14.7505,-154.984	1/1:50:0,50,0:0:0:50,0:1750,0:-157.758,-15.0515,0,-157.758,-15.0515,-157.758	1/1:63:0,63,0:0:0:63,0:2190,0:-197.346,-18.9649,0,-197.346,-18.9649,-197.346	1/1:47:0,47,0:0:0:47,0:1646,0:-148.395,-14.1484,0,-148.395,-14.1484,-148.395	1/1:37:0,37,0:0:0:37,0:1315,0:-118.604,-11.1381,0,-118.604,-11.1381,-118.604	1/1:31:0,31,0:0:0:31,0:1063,0:-95.9617,-9.33193,0,-95.9617,-9.33193,-95.9617	1/1:47:0,47,0:0:0:47,0:1642,0:-148.019,-14.1484,0,-148.019,-14.1484,-148.019	1/1:51:0,51,0:0:0:51,0:1785,0:-160.92,-15.3525,0,-160.92,-15.3525,-160.92	1/1:22:0,21,1:0:0:21,1:733,36:-65.9284,-6.32163,0,-62.9905,-3.02439,-62.6895	1/1:187:0,186,0:0:0:186,0:6527,0:-587.148,-55.9916,0,-587.148,-55.9916,-587.148	1/1:130:0,130,0:0:0:130,0:4593,0:-413.526,-39.1339,0,-413.526,-39.1339,-413.526	1/2:153:0,48,103:0:0:48,103:1675,3659:-434.313,-298.084,-283.634,-136.221,0,-105.215	1/1:44:0,44,0:0:0:44,0:1558,0:-140.504,-13.2453,0,-140.504,-13.2453,-140.504	1/2:124:0,62,61:0:0:62,61:2172,2173:-353.701,-176.974,-158.31,-176.721,0,-158.358	1/1:77:0,77,0:0:0:77,0:2680,0:-241.414,-23.1793,0,-241.414,-23.1793,-241.414	1/2:368:0,169,197:0:0:169,197:5930,7015:-1054.34,-571.784,-520.91,-482.584,0,-423.281	1/2:173:0,99,73:0:0:99,73:3491,2609:-497.009,-212.769,-182.967,-284.353,0,-262.378	1/1:20:0,20,0:0:0:20,0:690,0:-62.4093,-6.0206,0,-62.4093,-6.0206,-62.4093	1/1:270:0,268,0:0:0:268,0:9515,0:-855.904,-80.676,0,-855.904,-80.676,-855.904	1/1:100:0,98,1:0:0:98,1:3469,36:-312.041,-29.5009,0,-309.103,-26.5635,-308.802	1/2:92:0,46,46:0:0:46,46:1612,1656:-266.643,-135.479,-121.631,-131.519,0,-117.672	1/2:10:0,4,6:0:0:4,6:144,212:-29.3709,-17.6186,-16.4145,-12.1095,0,-10.3033	1/1:27:0,27,0:0:0:27,0:942,0:-85.0882,-8.12781,0,-85.0882,-8.12781,-85.0882	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/1:11:0,11,0:0:0:11,0:396,0:-35.9765,-3.31133,0,-35.9765,-3.31133,-35.9765	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:153:0,153,0:0:0:153,0:5419,0:-487.338,-46.0576,0,-487.338,-46.0576,-487.338	1/2:263:0,105,158:0:0:105,158:3711,5630:-761.378,-459.197,-427.589,-302.535,0,-254.972	1/2:52:0,24,28:0:0:24,28:846,1006:-151.294,-82.416,-75.1913,-69.2335,0,-60.8047	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:171:0,108,62:0:0:108,62:3816,2224:-492.14,-181.396,-148.885,-310.741,0,-292.077	1/2:29:0,19,10:0:0:19,10:664,360:-83.7366,-29.734,-24.0144,-54.3588,0,-51.3485	1/2:158:0,74,82:0:0:74,82:2612,2937:-451.863,-239.504,-217.228,-212.355,0,-187.67	1/2:29:0,22,7:0:0:22,7:781,252:-84.5433,-20.9171,-14.2944,-63.9848,0,-61.8775	1/1:40:0,40,0:0:0:40,0:1412,0:-127.371,-12.0412,0,-127.371,-12.0412,-127.371	1/2:147:0,78,68:0:0:78,68:2730,2440:-421.199,-199.131,-175.651,-222.171,0,-201.701	1/2:134:0,59,74:0:0:59,74:2030,2607:-377.078,-212.224,-194.463,-164.844,0,-142.568	1/2:192:0,112,80:0:0:112,80:3912,2841:-549.854,-231.746,-198.031,-318.46,0,-294.378	1/1:131:0,129,1:0:0:129,1:4517,36:-406.396,-38.8329,0,-403.458,-35.8205,-403.157	1/1:120:0,120,0:0:0:120,0:4270,0:-384.468,-36.1236,0,-384.468,-36.1236,-384.468	1/1:75:0,74,1:0:0:74,1:2607,21:-234.663,-22.2762,0,-233.076,-20.4773,-232.775	1/2:8:0,4,4:0:0:4,4:142,144:-23.6749,-12.1071,-10.903,-11.9251,0,-10.721	1/2:142:0,71,70:0:0:71,70:2515,2508:-409.539,-204.685,-183.312,-204.997,0,-183.925	1/2:62:0,33,29:0:0:33,29:1180,1040:-181.341,-85.1274,-75.1934,-96.5715,0,-87.8417	1/2:20:0,14,6:0:0:14,6:502,216:-58.9278,-17.9843,-13.7699,-41.3028,0,-39.4966	1/2:139:0,76,63:0:0:76,63:2707,2260:-405.281,-184.684,-161.806,-220.955,0,-201.99	1/2:34:0,24,10:0:0:24,10:840,356:-97.674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chr08	6225962	.	C	T	36537.5	PASS	AB=0.50545;ABP=4.09912;AC=36;AF=0.193548;AN=186;AO=2154;CIGAR=1X;DP=11811;DPB=11811;DPRA=1.2989;EPP=4663.01;EPPR=20803.8;GTI=1;LEN=1;MEANALT=1.09091;MQM=59.7516;MQMR=59.8761;NS=93;NUMALT=1;ODDS=0.989808;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77229;QR=344715;RO=9651;RPL=2;RPP=4663.01;RPPR=20803.8;RPR=2152;RUN=1;SAF=0;SAP=4680.36;SAR=2154;SRF=0;SRP=20959.9;SRR=9651;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:91:91,0:91:3238:0:0:0,-27.3937,-291.642	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/1:174:80,94:80:2844:94:3356:-249.876,0,-203.817	0/0:424:423,1:423:15133:1:36:0,-124.038,-1358.07	0/1:100:46,54:46:1652:54:1940:-144.758,0,-118.865	0/1:35:21,14:21:756:14:504:-35.162,0,-57.8205	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.046	0/0:258:258,0:258:9198:0:0:0,-77.6657,-827.728	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.286	0/0:140:140,0:140:4991:0:0:0,-42.1442,-449.051	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.344	0/0:138:138,0:138:4889:0:0:0,-41.5421,-440.166	0/0:131:131,0:131:4657:0:0:0,-39.4349,-419.293	0/0:69:69,0:69:2450:0:0:0,-20.7711,-220.726	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.383	0/0:86:86,0:86:3032:0:0:0,-25.8886,-273.108	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.321	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/0:335:333,1:333:11923:1:32:0,-97.6846,-1069.66	0/0:244:242,1:242:8660:1:36:0,-69.9118,-775.784	0/1:113:50,63:50:1771:63:2260:-169.639,0,-125.65	0/0:193:193,0:193:6889:0:0:0,-58.0988,-620.07	0/1:73:47,26:47:1688:26:936:-62.5843,0,-130.232	0/0:104:104,0:104:3703:0:0:0,-31.3071,-333.473	0/1:361:191,170:191:6847:170:6085:-439.026,0,-507.523	0/1:145:54,91:54:1927:91:3276:-251.352,0,-130.057	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:402:401,1:401:14384:1:36:0,-117.416,-1290.59	0/0:166:156,10:156:5581:10:356:0,-17.5897,-469.985	0/1:84:50,34:50:1788:34:1205:-83.4674,0,-135.916	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:193:193,0:193:6904:0:0:0,-58.0988,-620.545	0/1:144:88,56:88:3164:56:2000:-136.919,0,-241.622	0/1:44:23,21:23:820:21:752:-54.7609,0,-60.8772	.:.:.:.:.:.:.:.	0/1:345:151,194:151:5403:194:6968:-523.306,0,-382.227	0/1:37:12,25:12:432:25:900:-70.1545,0,-28.0831	0/1:189:106,83:106:3787:83:2984:-211.85,0,-284.061	0/1:68:35,33:35:1234:33:1188:-86.7227,0,-90.8926	0/0:71:71,0:71:2534:0:0:0,-21.3731,-228.31	0/1:124:53,71:53:1883:71:2526:-190.195,0,-132.42	0/1:193:105,88:105:3748:88:3168:-227.221,0,-279.422	0/1:228:123,105:123:4412:105:3772:-270.85,0,-328.266	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.551	0/0:225:225,0:225:8061:0:0:0,-67.7317,-725.463	0/0:131:131,0:131:4687:0:0:0,-39.4349,-421.945	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:128:63,65:63:2252:65:2332:-171.585,0,-164.401	0/1:41:19,22:19:680:22:781:-58.2698,0,-49.1869	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:232:104,128:104:3728:128:4604:-344.656,0,-265.882	0/1:71:34,37:34:1212:37:1328:-98.4487,0,-88.0132	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:20:12,8:12:432:8:288:-20.2391,0,-33.2006	0/0:96:96,0:96:3402:0:0:0,-28.8989,-306.337	0/0:96:93,3:93:3302:3:108:0,-18.8237,-287.293	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:289:158,130:158:5634:130:4656:-332.087,0,-420.066	0/0:294:294,0:294:10503:0:0:0,-88.5028,-945.185	0/0:85:84,1:84:3016:1:36:0,-21.9893,-268.072	0/0:111:111,0:111:3963:0:0:0,-33.4143,-356.841	0/0:271:270,1:270:9639:1:36:0,-77.9809,-863.801	0/1:212:100,112:100:3554:112:4020:-298.115,0,-256.248	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.038	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:62:62,0:62:2206:0:0:0,-18.6639,-198.793	0/1:159:83,76:83:2967:76:2716:-196.766,0,-219.38	0/0:229:229,0:229:8143:0:0:0,-68.9359,-732.818	0/0:307:307,0:307:10978:0:0:0,-92.4162,-987.914	0/0:219:219,0:219:7815:0:0:0,-65.9256,-703.149	0/0:139:139,0:139:4951:0:0:0,-41.8432,-445.742	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:184:184,0:184:6569:0:0:0,-55.3895,-590.977	0/1:246:120,125:120:4295:125:4481:-329.314,0,-312.581	0/0:375:375,0:375:13383:0:0:0,-112.886,-1204.26	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.423	0/0:87:87,0:87:3070:0:0:0,-26.1896,-276.528	0/1:57:25,32:25:900:32:1152:-86.8306,0,-64.1623	0/0:151:151,0:151:5385:0:0:0,-45.4555,-484.707	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/1:78:33,45:33:1188:45:1620:-122.587,0,-83.7483	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.57	0/1:40:16,24:16:563:24:864:-66.041,0,-38.958	0/1:80:42,38:42:1508:38:1364:-98.9768,0,-111.918	0/1:83:26,57:26:936:57:2038:-158.433,0,-59.574	0/0:294:292,0:292:10443:0:0:0,-87.9008,-939.277	0/0:115:114,1:114:4059:1:21:0,-32.5291,-363.407
chr08	6289641	.	TCTA	TCTT	96627.5	PASS	AB=0.424443;ABP=123.11;AC=147;AF=0.798913;AN=184;AO=4525;CIGAR=3M1X;DP=5952;DPB=5953.25;DPRA=16.5111;EPP=9828.92;EPPR=3032.21;GTI=3;LEN=1;MEANALT=1.31111;MQM=58.4214;MQMR=58.9792;NS=92;NUMALT=1;ODDS=0.367015;PAIRED=0;PAIREDR=0;PAO=2.5;PQA=67.5;PQR=0;PRO=0;QA=161986;QR=49316;RO=1395;RPL=0;RPP=9828.92;RPPR=3032.21;RPR=4525;RUN=1;SAF=4525;SAP=9828.92;SAR=0;SRF=1395;SRP=3032.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:540:-48.7376,-4.51545,0	1/1:33:0,29:0:0:29:1044:-93.744,-8.72987,0	0/1:139:91,46:91:3213:46:1644:-106.126,0,-247.657	1/1:93:0,93:0:0:93:3313:-297.744,-27.9958,0	0/1:33:23,10:23:816:10:360:-22.8103,0,-63.8212	0/1:21:10,11:10:358:11:396:-29.5697,0,-26.2399	1/1:43:0,43:0:0:43:1536:-138.487,-12.9443,0	1/1:70:0,70:0:0:70:2484:-223.721,-21.0721,0	1/1:26:0,26:0:0:26:928:-83.1202,-7.82678,0	1/1:55:0,55:0:0:55:1965:-177.014,-16.5567,0	1/1:57:0,57:0:0:57:2031:-182.932,-17.1587,0	1/1:95:0,94:0:0:94:3356:-301.086,-28.2968,0	1/1:85:0,83:0:0:83:2966:-266.325,-24.9855,0	1/1:71:0,71:0:0:71:2536:-227.896,-21.3731,0	1/1:46:0,46:0:0:46:1648:-148.562,-13.8474,0	1/1:52:0,52:0:0:52:1864:-167.964,-15.6536,0	1/1:27:0,27:0:0:27:968:-87.278,-8.12781,0	1/1:34:0,33:0:0:33:1188:-106.817,-9.93399,0	1/1:26:0,26:0:0:26:936:-84.3845,-7.82678,0	1/1:115:0,114:0:0:114:4092:-367.524,-34.3174,0	1/1:53:0,53:0:0:53:1900:-171.212,-15.9546,0	0/1:69:52,17:52:1851:17:602:-33.2685,0,-146.034	1/1:47:0,46:0:0:46:1632:-146.802,-13.8474,0	0/1:21:14,7:14:497:7:252:-16.5936,0,-38.7142	1/1:35:0,35:0:0:35:1256:-113.32,-10.5361,0	0/1:149:79,69:79:2770:69:2472:-177.666,0,-204.451	0/1:160:102,57:102:3605:57:2040:-135.557,0,-275.005	1/1:35:0,35:0:0:35:1252:-112.816,-10.5361,0	1/1:145:0,144:0:0:144:5168:-464.14,-43.3483,0	1/1:95:0,95:0:0:95:3393:-305.111,-28.5979,0	0/1:56:24,32:24:849:32:1152:-87.0787,0,-59.6817	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:68:-6.4532,-0.60206,0	1/1:7:0,7:0:0:7:252:-22.9686,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.2995,-1.20412,0	1/1:149:0,149:0:0:149:5336:-479.309,-44.8535,0	0/1:81:48,32:48:1673:32:1152:-79.6408,0,-126.577	0/1:66:41,25:41:1437:25:896:-60.9347,0,-109.673	1/1:6:0,6:0:0:6:216:-19.7871,-1.80618,0	0/1:124:50,74:50:1759:74:2652:-201.311,0,-121.088	0/1:34:21,13:21:755:13:464:-31.8223,0,-58.0309	0/1:115:71,43:71:2505:43:1540:-103.822,0,-190.581	0/1:36:20,15:20:708:15:540:-38.1803,0,-53.2664	1/1:32:0,32:0:0:32:1152:-103.429,-9.63296,0	0/1:67:38,29:38:1359:29:1040:-73.7372,0,-101.616	0/1:77:37,39:37:1293:39:1404:-102.953,0,-93.4409	0/1:92:47,44:47:1657:44:1584:-115.121,0,-121.659	1/1:55:0,55:0:0:55:1972:-177.691,-16.5567,0	1/1:112:0,112:0:0:112:4008:-359.975,-33.7154,0	1/1:53:0,53:0:0:53:1904:-171.006,-15.9546,0	0/1:7:1,6:1:36:6:216:-17.6654,0,-1.49106	0/1:162:91,71:91:3224:71:2544:-180.256,0,-241.017	0/1:92:58,34:58:2054:34:1220:-82.1351,0,-157.434	0/1:9:8,1:8:281:1:36:-0.877213,0,-22.9162	0/1:128:74,53:74:2570:53:1904:-131.756,0,-192.936	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7822	1/1:11:0,11:0:0:11:392:-35.2385,-3.31133,0	0/1:9:6,1:6:216:1:36:-1.13124,0,-17.307	1/1:66:0,66:0:0:66:2364:-211.647,-19.868,0	1/1:108:5,103:5:179:103:3669:-313.519,-16.0688,0	.:.:.:.:.:.:.:.	0/1:121:55,65:55:1962:65:2332:-173.559,0,-140.334	1/1:71:0,71:0:0:71:2540:-228.662,-21.3731,0	1/1:50:0,50:0:0:50:1778:-159.862,-15.0515,0	1/1:72:0,72:0:0:72:2584:-232.59,-21.6742,0	1/1:63:0,63:0:0:63:2248:-202.167,-18.9649,0	0/1:103:78,24:78:2773:24:860:-46.1952,0,-218.664	1/1:51:0,51:0:0:51:1832:-163.942,-15.3525,0	1/1:40:1,39:1:36:39:1396:-122.217,-8.44293,0	1/1:31:0,31:0:0:31:1108:-99.9889,-9.33193,0	1/1:6:0,6:0:0:6:212:-19.4185,-1.80618,0	1/1:95:0,95:0:0:95:3404:-305.304,-28.5979,0	0/1:46:28,18:28:1003:18:644:-44.4129,0,-76.7182	1/1:85:0,84:0:0:84:3012:-270.433,-25.2865,0	1/1:137:0,137:0:0:137:4920:-442.529,-41.2411,0	1/1:75:0,75:0:0:75:2650:-238.546,-22.5773,0	1/1:87:1,85:1:36:85:3044:-269.811,-22.6299,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:68:0,67:0:0:67:2412:-216.917,-20.169,0	0/1:67:31,36:31:1097:36:1288:-95.9127,0,-78.8212	1/1:163:1,162:1:36:162:5790:-516.648,-45.4696,0	1/1:52:1,51:1:26:51:1836:-162.537,-13.0537,0	1/1:69:0,68:0:0:68:2444:-219.403,-20.47,0	0/1:41:24,16:24:847:16:567:-38.9002,0,-64.0868	1/1:86:1,85:1:36:85:3048:-270.61,-22.2903,0	1/1:28:0,28:0:0:28:1008:-91.0317,-8.42884,0	0/1:57:35,21:35:1242:21:756:-50.9893,0,-94.649	1/1:61:0,61:0:0:61:2179:-196.119,-18.3628,0	0/1:52:21,31:21:749:31:1116:-84.8115,0,-51.933	0/1:120:54,66:54:1929:66:2368:-176.738,0,-137.536	0/1:66:44,21:44:1555:21:744:-47.3137,0,-120.213	1/1:97:0,97:0:0:97:3455:-309.21,-29.1999,0	1/1:77:0,77:0:0:77:2756:-248.181,-23.1793,0
chr08	6289686	.	TTTTA	TTTTG,GTTTG	112875	PASS	AB=0.405476,0.584963;ABP=181.583,147.285;AC=147,37;AF=0.798913,0.201087;AN=184;AO=4076,1363;CIGAR=4M1X,1X3M1X;DP=5489;DPB=5490.4;DPRA=15.225,1.30237;EPP=8853.93,2962.73;EPPR=7.35324;GTI=3;LEN=1,5;MEANALT=1.93333,2.525;MQM=58.6688,58.9633;MQMR=60;NS=92;NUMALT=2;ODDS=0.492159;PAIRED=0,0;PAIREDR=0;PAO=1,3;PQA=18,108;PQR=18;PRO=1;QA=141677,47135;QR=70;RO=2;RPL=4076,1363;RPP=8853.93,2962.73;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=4076,1363;SAP=8853.93,2962.73;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,10,0:0:0:10,0:348,0:-31.3026,-3.0103,0,-31.3026,-3.0103,-31.3026	1/1:29:0,28,0:0:0:28,0:981,0:-88.2232,-8.42884,0,-88.2232,-8.42884,-88.2232	1/2:135:0,44,90:0:0:44,90:1528,3132:-378.834,-254.65,-241.405,-124.269,0,-97.1761	1/1:84:0,84,0:0:0:84,0:2932,0:-263.662,-25.2865,0,-263.662,-25.2865,-263.662	1/2:33:0,10,22:0:0:10,22:352,774:-91.7197,-63.0628,-60.0525,-28.714,0,-22.0914	1/2:20:0,10,10:0:0:10,10:347,344:-56.4741,-28.2807,-25.2704,-28.5387,0,-25.5284	1/1:37:0,37,0:0:0:37,0:1305,0:-117.741,-11.1381,0,-117.741,-11.1381,-117.741	1/1:61:0,61,0:0:0:61,0:2109,0:-189.999,-18.3628,0,-189.999,-18.3628,-189.999	1/1:25:0,24,0:0:0:24,0:805,0:-71.9939,-7.22472,0,-71.9939,-7.22472,-71.9939	1/1:53:0,53,0:0:0:53,0:1860,0:-167.537,-15.9546,0,-167.537,-15.9546,-167.537	1/1:57:0,56,0:0:0:56,0:1913,0:-172.053,-16.8577,0,-172.053,-16.8577,-172.053	1/1:86:0,85,0:0:0:85,0:2955,0:-265.061,-25.5876,0,-265.061,-25.5876,-265.061	1/1:78:0,77,0:0:0:77,0:2715,0:-243.771,-23.1793,0,-243.771,-23.1793,-243.771	1/1:68:0,68,0:0:0:68,0:2361,0:-212.316,-20.47,0,-212.316,-20.47,-212.316	1/1:45:0,45,0:0:0:45,0:1591,0:-143.432,-13.5464,0,-143.432,-13.5464,-143.432	1/1:52:0,50,0:0:0:50,0:1752,0:-157.643,-15.0515,0,-157.643,-15.0515,-157.643	1/1:25:0,25,0:0:0:25,0:867,0:-78.2051,-7.52575,0,-78.2051,-7.52575,-78.2051	1/1:32:0,32,0:0:0:32,0:1128,0:-101.778,-9.63296,0,-101.778,-9.63296,-101.778	1/1:26:0,26,0:0:0:26,0:920,0:-82.9421,-7.82678,0,-82.9421,-7.82678,-82.9421	1/1:98:0,98,0:0:0:98,0:3424,0:-308.306,-29.5009,0,-308.306,-29.5009,-308.306	1/1:45:0,45,0:0:0:45,0:1591,0:-143.474,-13.5464,0,-143.474,-13.5464,-143.474	1/2:68:0,16,51:0:0:16,51:543,1722:-183.592,-139.571,-134.754,-44.1132,0,-28.7607	1/1:40:0,40,0:0:0:40,0:1419,0:-127.923,-12.0412,0,-127.923,-12.0412,-127.923	1/2:21:0,7,14:0:0:7,14:252,493:-60.9117,-40.4597,-38.3525,-20.808,0,-16.5936	1/1:31:0,31,0:0:0:31,0:1066,0:-96.2386,-9.33193,0,-96.2386,-9.33193,-96.2386	1/2:142:0,63,78:0:0:63,78:2149,2716:-395.038,-220.764,-201.799,-174.396,0,-150.916	1/2:150:0,49,101:0:0:49,101:1712,3498:-422.334,-283.107,-268.357,-139.574,0,-109.17	1/1:32:0,32,0:0:0:32,0:1123,0:-101.116,-9.63296,0,-101.116,-9.63296,-101.116	1/1:126:0,125,0:0:0:125,0:4357,0:-391.391,-37.6288,0,-391.391,-37.6288,-391.391	1/1:87:0,86,0:0:0:86,0:3015,0:-270.838,-25.8886,0,-270.838,-25.8886,-270.838	1/2:53:0,30,23:0:0:30,23:1051,799:-150.763,-65.2787,-56.2478,-85.8326,0,-78.9089	2/2:2:0,0,2:0:0:0,2:0,62:-5.88849,-5.88849,-5.88849,-0.60206,-0.60206,0	.:.:.:.:.:.:.:.	1/1:2:0,2,0:0:0:2,0:72,0:-6.82552,-0.60206,0,-6.82552,-0.60206,-6.82552	1/1:7:0,7,0:0:0:7,0:248,0:-22.6122,-2.10721,0,-22.6122,-2.10721,-22.6122	1/1:4:0,4,0:0:0:4,0:144,0:-13.2281,-1.20412,0,-13.2281,-1.20412,-13.2281	1/1:139:0,135,0:0:0:135,0:4665,0:-419.49,-40.6391,0,-419.49,-40.6391,-419.49	1/2:79:0,33,44:0:0:33,44:1122,1533:-214.221,-124.644,-114.71,-89.5608,0,-76.3155	1/2:63:0,24,38:0:0:24,38:783,1292:-167.945,-104.81,-97.5851,-63.1956,0,-51.7565	1/1:6:0,6,0:0:0:6,0:212,0:-19.4214,-1.80618,0,-19.4214,-1.80618,-19.4214	1/2:117:0,67,50:0:0:67,50:2300,1710:-325.758,-139.037,-118.868,-187.063,0,-172.012	1/2:33:0,12,21:0:0:12,21:427,737:-95.0721,-60.3213,-56.7089,-35.1045,0,-28.7828	1/2:106:0,34,70:0:0:34,70:1178,2409:-291.164,-195.477,-185.242,-95.738,0,-74.6659	1/2:34:0,14,19:0:0:14,19:500,667:-95.118,-54.3497,-50.1353,-40.8547,0,-35.1351	1/1:19:0,19,0:0:0:19,0:594,0:-53.4807,-5.71957,0,-53.4807,-5.71957,-53.4807	1/2:65:0,27,38:0:0:27,38:946,1317:-183.958,-106.989,-98.8616,-77.3169,0,-65.8778	1/2:72:0,36,35:0:0:36,35:1208,1194:-194.252,-96.8743,-86.0373,-97.4138,0,-86.8777	1/2:84:0,39,44:0:0:39,44:1383,1508:-235.06,-122.418,-110.678,-112.657,0,-99.4113	1/1:50:0,50,0:0:0:50,0:1729,0:-155.858,-15.0515,0,-155.858,-15.0515,-155.858	1/1:96:0,95,0:0:0:95,0:3358,0:-301.212,-28.5979,0,-301.212,-28.5979,-301.212	1/1:49:0,49,0:0:0:49,0:1711,0:-154.123,-14.7505,0,-154.123,-14.7505,-154.123	1/2:7:0,6,1:0:0:6,1:212,36:-20.5391,-3.29724,-1.49106,-17.6007,0,-17.2997	1/2:155:0,64,91:0:0:64,91:2234,3147:-437.292,-255.734,-236.468,-181.905,0,-154.511	1/2:83:0,29,54:0:0:29,54:1012,1903:-237.465,-155.29,-146.56,-82.5241,0,-66.2685	1/2:9:0,1,7:0:0:1,7:36,241:-22.6187,-19.6884,-19.3874,-2.99991,0,-0.892704	1/2:113:0,42,71:0:0:42,71:1457,2447:-316.649,-199.051,-186.408,-117.942,0,-96.5689	2/2:6:0,0,6:0:0:0,6:0,216:-19.7822,-19.7822,-19.7822,-1.80618,-1.80618,0	1/1:8:0,8,0:0:0:8,0:280,0:-25.5393,-2.40824,0,-25.5393,-2.40824,-25.5393	1/2:9:0,3,6:0:0:3,6:99,210:-25.4179,-17.4208,-16.5177,-8.33349,0,-6.52731	1/1:60:0,58,0:0:0:58,0:2025,0:-182.026,-17.4597,0,-182.026,-17.4597,-182.026	1/1:102:1,96,5:1:34:96,5:3356,173:-298.636,-26.1419,0,-284.884,-14.8409,-286.137	.:.:.:.:.:.:.:.	1/2:111:0,56,54:0:0:56,54:1961,1893:-313.533,-153.996,-137.138,-159.529,0,-143.273	1/1:59:0,58,0:0:0:58,0:2030,0:-182.628,-17.4597,0,-182.628,-17.4597,-182.628	1/1:41:0,40,0:0:0:40,0:1388,0:-124.81,-12.0412,0,-124.81,-12.0412,-124.81	1/1:62:0,61,0:0:0:61,0:2130,0:-191.6,-18.3628,0,-191.6,-18.3628,-191.6	1/1:58:0,57,0:0:0:57,0:1948,0:-174.906,-17.1587,0,-174.906,-17.1587,-174.906	1/2:101:0,21,77:0:0:21,77:740,2705:-280.223,-220.079,-213.757,-60.1441,0,-36.9648	1/1:46:1,45,0:1:36:45,0:1567,0:-137.718,-10.2491,0,-138.019,-13.5464,-140.957	1/1:36:0,35,1:0:0:35,1:1195,36:-107.48,-10.5361,0,-104.543,-7.23881,-104.241	1/1:25:0,25,0:0:0:25,0:853,0:-77.0693,-7.52575,0,-77.0693,-7.52575,-77.0693	1/1:7:0,7,0:0:0:7,0:240,0:-21.9143,-2.10721,0,-21.9143,-2.10721,-21.9143	1/1:87:0,86,0:0:0:86,0:3010,0:-270.785,-25.8886,0,-270.785,-25.8886,-270.785	1/2:48:0,19,29:0:0:19,29:676,995:-136.129,-81.1076,-75.3881,-55.3713,0,-46.6414	1/1:75:0,74,0:0:0:74,0:2544,0:-228.778,-22.2762,0,-228.778,-22.2762,-228.778	1/1:123:0,123,0:0:0:123,0:4343,0:-390.677,-37.0267,0,-390.677,-37.0267,-390.677	1/1:70:0,70,0:0:0:70,0:2407,0:-216.796,-21.0721,0,-216.796,-21.0721,-216.796	1/1:79:0,78,1:0:0:78,1:2691,36:-241.382,-23.4803,0,-238.445,-20.1831,-238.144	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:67:0,67,0:0:0:67,0:2323,0:-209.27,-20.169,0,-209.27,-20.169,-209.27	1/2:63:0,33,30:0:0:33,30:1119,1050:-176.35,-85.7296,-75.7956,-90.965,0,-81.9341	1/1:145:0,142,1:0:0:142,1:4944,36:-444.399,-42.7463,0,-441.462,-39.8082,-441.161	1/1:47:0,47,0:0:0:47,0:1622,0:-146.193,-14.1484,0,-146.193,-14.1484,-146.193	1/1:65:0,65,0:0:0:65,0:2287,0:-205.682,-19.567,0,-205.682,-19.567,-205.682	1/2:40:0,16,24:0:0:16,24:536,816:-109.927,-66.5242,-61.7077,-43.7397,0,-36.515	1/1:76:0,74,1:0:0:74,1:2543,36:-228.799,-22.2762,0,-225.861,-19.268,-225.56	1/1:28:0,28,0:0:0:28,0:999,0:-90.1749,-8.42884,0,-90.1749,-8.42884,-90.1749	1/2:53:0,19,34:0:0:19,34:664,1164:-148.627,-94.7509,-89.0314,-54.2218,0,-43.9868	1/1:52:0,52,0:0:0:52,0:1810,0:-163.071,-15.6536,0,-163.071,-15.6536,-163.071	1/2:50:0,28,21:0:0:28,21:990,704:-137.462,-56.9304,-48.5016,-80.5185,0,-74.1969	1/2:117:0,61,54:0:0:61,54:2138,1855:-324.451,-150.595,-132.232,-173.943,0,-157.688	1/2:65:0,19,44:0:0:19,44:646,1493:-173.434,-121.053,-115.334,-52.4294,0,-39.1841	1/1:87:0,87,0:0:0:87,0:2958,0:-265.172,-26.1896,0,-265.172,-26.1896,-265.172	1/1:75:0,75,0:0:0:75,0:2577,0:-232.106,-22.5773,0,-232.106,-22.5773,-232.106
chr08	6302137	.	A	G	156514	PASS	AB=0.626741;ABP=403.723;AC=154;AF=0.819149;AN=188;AO=7172;CIGAR=1X;DP=8254;DPB=8254;DPRA=0;EPP=15576.8;EPPR=2339.51;GTI=5;LEN=1;MEANALT=1.06383;MQM=59.9904;MQMR=60;NS=94;NUMALT=1;ODDS=2.23904;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256175;QR=37674;RO=1076;RPL=0;RPP=15576.8;RPPR=2339.51;RPR=7172;RUN=1;SAF=7172;SAP=15576.8;SAR=0;SRF=1076;SRP=2339.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:72:0,72:0:0:72:2585:-232.899,-21.6742,0	1/1:67:0,67:0:0:67:2397:-215.985,-20.169,0	0/1:63:30,33:30:1072:33:1166:-86.2803,0,-77.8276	1/1:181:0,181:0:0:181:6448:-580.403,-54.4864,0	0/1:63:22,41:22:762:41:1464:-113.091,0,-49.9302	0/1:32:4,28:4:144:28:993:-80.0495,0,-3.68066	1/1:81:0,81:0:0:81:2885:-259.885,-24.3834,0	1/1:158:1,156:1:32:156:5559:-497.212,-44.4023,0	1/1:138:0,138:0:0:138:4941:-444.838,-41.5421,0	1/1:125:0,125:0:0:125:4431:-398.96,-37.6288,0	1/1:64:0,64:0:0:64:2287:-206.091,-19.2659,0	1/1:113:0,113:0:0:113:4029:-362.793,-34.0164,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0	1/1:93:0,93:0:0:93:3327:-299.647,-27.9958,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:73:0,73:0:0:73:2585:-232.896,-21.9752,0	1/1:48:0,48:0:0:48:1698:-153.102,-14.4494,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	1/1:153:0,153:0:0:153:5485:-493.774,-46.0576,0	1/1:111:0,111:0:0:111:3960:-356.363,-33.4143,0	0/1:56:28,28:28:1000:28:1008:-74.1787,0,-73.4577	1/1:233:0,233:0:0:233:8315:-748.355,-70.14,0	0/1:28:11,17:11:392:17:608:-46.6232,0,-27.1912	1/1:65:0,64:0:0:64:2277:-204.831,-19.2659,0	0/1:251:54,197:54:1906:197:7065:-560.348,0,-96.2553	0/1:171:74,96:74:2613:96:3448:-258.997,0,-183.883	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:240:0,240:0:0:240:8581:-772.286,-72.2472,0	1/1:63:0,63:0:0:63:2239:-201.772,-18.9649,0	0/1:136:48,88:48:1667:88:3160:-243.684,0,-109.371	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:234:1,233:1:36:233:8277:-741.152,-66.8427,0	0/1:94:16,78:16:561:78:2777:-221.873,0,-22.5203	0/1:68:22,46:22:788:46:1633:-126.787,0,-50.7748	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:104:50,54:50:1788:54:1936:-143.209,0,-129.895	0/1:42:18,24:18:644:24:864:-65.4393,0,-45.6473	0/1:81:20,61:20:705:61:2173:-171.451,0,-39.3894	0/1:193:81,112:81:2772:112:3994:-301.549,0,-191.615	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	0/1:102:27,74:27:968:74:2656:-208.522,0,-56.6736	0/1:89:18,71:18:616:71:2552:-203.138,0,-28.9672	0/1:85:38,47:38:1334:47:1672:-125.18,0,-94.7683	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:93:1,92:1:36:92:3300:-293.62,-24.3975,0	1/1:117:0,116:0:0:116:4138:-372.242,-34.9195,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:49:30,19:30:1080:19:665:-45.4223,0,-82.7628	0/1:74:32,42:32:1140:42:1508:-113.738,0,-80.633	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:137:56,81:56:1898:81:2881:-218.285,0,-129.846	0/1:46:22,24:22:754:24:848:-62.7923,0,-54.3259	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:64:0,64:0:0:64:2277:-205.191,-19.2659,0	1/1:103:0,103:0:0:103:3696:-332.842,-31.0061,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:145:43,102:43:1457:102:3653:-285.323,0,-87.7638	1/1:86:0,86:0:0:86:3073:-276.797,-25.8886,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:109:0,109:0:0:109:3924:-353.351,-32.8123,0	1/1:361:1,359:1:36:359:12798:-1148.04,-105.132,0	0/1:154:76,78:76:2595:78:2777:-203.811,0,-187.434	1/1:43:0,43:0:0:43:1535:-138.442,-12.9443,0	1/1:51:2,49:2:57:49:1720:-149.668,-9.93922,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:76:0,76:0:0:76:2705:-243.693,-22.8783,0	0/1:36:12,24:12:417:24:860:-66.8848,0,-27.0231	1/1:152:0,152:0:0:152:5425:-488.38,-45.7566,0	1/1:104:0,104:0:0:104:3713:-334.371,-31.3071,0	1/1:110:0,110:0:0:110:3933:-354.161,-33.1133,0	1/1:73:0,73:0:0:73:2627:-236.677,-21.9752,0	0/1:5:2,3:2:57:3:108:-8.57002,0,-3.90816	1/1:78:0,78:0:0:78:2777:-250.17,-23.4803,0	0/1:65:19,46:19:635:46:1636:-127.962,0,-37.8931	1/1:156:0,156:0:0:156:5585:-502.771,-46.9607,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	0/1:65:21,44:21:748:44:1584:-123.285,0,-48.0783	1/1:189:0,189:0:0:189:6754:-607.931,-56.8947,0	1/1:26:0,26:0:0:26:912:-82.3931,-7.82678,0	0/1:72:37,35:37:1298:35:1251:-91.2201,0,-95.443	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	0/1:47:20,27:20:720:27:949:-71.5744,0,-50.9804	0/1:96:34,62:34:1220:62:2213:-170.534,0,-81.2079	0/1:202:99,103:99:3510:103:3666:-269.327,0,-255.301	1/1:148:0,148:0:0:148:5293:-476.504,-44.5524,0	1/1:127:0,127:0:0:127:4548:-409.486,-38.2308,0
chr08	6303176	.	ACACG	GCACA,GCACG	133126	PASS	AB=0.454322,0.541581;ABP=47.2484,39.6691;AC=147,37;AF=0.798913,0.201087;AN=184;AO=4921,1338;CIGAR=1X3M1X,1X4M;DP=6281;DPB=6281;DPRA=12.6667,1.19627;EPP=10688.8,2908.44;EPPR=0;GTI=0;LEN=5,1;MEANALT=1.64444,2.275;MQM=59.9567,60;MQMR=0;NS=92;NUMALT=2;ODDS=2.65788;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=172202,47344;QR=0;RO=0;RPL=0,0;RPP=10688.8,2908.44;RPPR=0;RPR=4921,1338;RUN=1,1;SAF=0,0;SAP=10688.8,2908.44;SAR=4921,1338;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16,0:0:0:16,0:559,0:-50.6024,-4.81648,0,-50.6024,-4.81648,-50.6024	1/1:82:0,82,0:0:0:82,0:2847,0:-256.47,-24.6845,0,-256.47,-24.6845,-256.47	1/2:121:0,50,71:0:0:50,71:1762,2533:-350.304,-206.847,-191.795,-143.812,0,-122.439	1/1:163:0,163,0:0:0:163,0:5689,0:-512.143,-49.0679,0,-512.143,-49.0679,-512.143	1/2:76:0,38,38:0:0:38,38:1346,1355:-220.455,-110.811,-99.3714,-110,0,-98.5608	1/2:26:0,14,12:0:0:14,12:494,432:-75.8314,-35.6088,-31.3944,-40.5791,0,-36.9668	1/1:127:0,127,0:0:0:127,0:4456,0:-401.217,-38.2308,0,-401.217,-38.2308,-401.217	1/1:53:0,53,0:0:0:53,0:1845,0:-166.326,-15.9546,0,-166.326,-15.9546,-166.326	1/1:47:0,47,0:0:0:47,0:1661,0:-149.776,-14.1484,0,-149.776,-14.1484,-149.776	1/1:48:0,48,0:0:0:48,0:1662,0:-149.864,-14.4494,0,-149.864,-14.4494,-149.864	1/1:34:0,34,0:0:0:34,0:1207,0:-108.937,-10.235,0,-108.937,-10.235,-108.937	1/1:52:0,52,0:0:0:52,0:1807,0:-162.911,-15.6536,0,-162.911,-15.6536,-162.911	1/1:53:0,53,0:0:0:53,0:1869,0:-168.489,-15.9546,0,-168.489,-15.9546,-168.489	1/1:40:0,40,0:0:0:40,0:1416,0:-127.738,-12.0412,0,-127.738,-12.0412,-127.738	1/1:45:0,45,0:0:0:45,0:1569,0:-141.499,-13.5464,0,-141.499,-13.5464,-141.499	1/1:42:0,42,0:0:0:42,0:1482,0:-133.675,-12.6433,0,-133.675,-12.6433,-133.675	1/1:49:0,49,0:0:0:49,0:1690,0:-152.36,-14.7505,0,-152.36,-14.7505,-152.36	1/1:34:0,34,0:0:0:34,0:1198,0:-108.126,-10.235,0,-108.126,-10.235,-108.126	1/1:26:0,26,0:0:0:26,0:888,0:-80.2302,-7.82678,0,-80.2302,-7.82678,-80.2302	1/1:130:0,130,0:0:0:130,0:4576,0:-412.011,-39.1339,0,-412.011,-39.1339,-412.011	1/1:69:0,69,0:0:0:69,0:2428,0:-218.777,-20.7711,0,-218.777,-20.7711,-218.777	1/2:135:0,43,92:0:0:43,92:1522,3249:-388.913,-264.938,-251.994,-124.328,0,-96.6336	1/1:78:0,78,0:0:0:78,0:2743,0:-247.114,-23.4803,0,-247.114,-23.4803,-247.114	1/2:68:0,40,28:0:0:40,28:1368,993:-192.275,-81.2537,-69.2125,-111.37,0,-102.941	1/1:49:0,49,0:0:0:49,0:1723,0:-155.353,-14.7505,0,-155.353,-14.7505,-155.353	1/2:185:0,75,110:0:0:75,110:2639,3901:-532.999,-318.169,-295.592,-215.182,0,-182.069	1/2:152:0,73,78:0:0:73,78:2584,2782:-437.319,-226.839,-204.864,-210.534,0,-187.054	1/1:29:0,29,0:0:0:29,0:1030,0:-93.014,-8.72987,0,-93.014,-8.72987,-93.014	1/1:236:0,235,1:0:0:235,1:8275,36:-744.326,-70.7421,0,-741.388,-67.4448,-741.087	1/1:60:0,55,1:0:0:55,1:1917,36:-172.469,-16.5567,0,-169.531,-13.6132,-169.23	1/2:91:0,45,46:0:0:45,46:1544,1611:-256.783,-131.428,-117.882,-125.701,0,-111.854	.:.:.:.:.:.:.:.	1/1:7:0,7,0:0:0:7,0:245,0:-22.3905,-2.10721,0,-22.3905,-2.10721,-22.3905	1/2:3:0,2,1:0:0:2,1:60,36:-8.05359,-3.29724,-2.69518,-5.0962,0,-4.79517	1/1:5:0,5,0:0:0:5,0:179,0:-16.4604,-1.50515,0,-16.4604,-1.50515,-16.4604	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:161:0,161,0:0:0:161,0:5627,0:-506.566,-48.4658,0,-506.566,-48.4658,-506.566	1/2:108:0,57,51:0:0:57,51:2017,1811:-312.209,-147.918,-130.76,-164.645,0,-149.292	1/2:36:0,24,12:0:0:24,12:833,428:-102.954,-35.2464,-28.0217,-68.0609,0,-64.4486	1/1:4:0,4,0:0:0:4,0:134,0:-12.3907,-1.20412,0,-12.3907,-1.20412,-12.3907	1/2:104:0,49,54:0:0:49,54:1685,1901:-291.73,-154.895,-140.145,-136.968,0,-120.713	1/2:32:0,17,15:0:0:17,15:598,522:-91.4629,-42.7918,-37.6743,-49.0206,0,-44.5052	1/2:96:0,52,44:0:0:52,44:1806,1533:-271.829,-125.012,-109.358,-147.165,0,-133.92	1/2:43:0,23,20:0:0:23,20:787,693:-120.545,-56.669,-49.7453,-64.2202,0,-58.1996	1/1:57:0,57,0:0:0:57,0:1997,0:-179.966,-17.1587,0,-179.966,-17.1587,-179.966	1/2:56:0,34,22:0:0:34,22:1188,783:-160.804,-64.1703,-53.9353,-96.9872,0,-90.3645	1/2:83:0,39,43:0:0:39,43:1327,1525:-231.971,-124.335,-112.595,-107.72,0,-94.7761	1/2:115:0,50,65:0:0:50,65:1746,2282:-328.093,-186.072,-171.021,-142.371,0,-122.804	1/1:74:0,74,0:0:0:74,0:2618,0:-235.87,-22.2762,0,-235.87,-22.2762,-235.87	1/1:78:0,77,1:0:0:77,1:2730,36:-245.584,-23.1793,0,-242.646,-19.8821,-242.345	1/1:125:0,124,0:0:0:124,0:4363,0:-392.539,-37.3277,0,-392.539,-37.3277,-392.539	1/2:7:0,3,3:0:0:3,3:108,108:-17.633,-8.81973,-7.91664,-8.81973,0,-7.91664	1/2:114:0,46,67:0:0:46,67:1591,2376:-322.847,-193.567,-179.72,-129.269,0,-109.1	1/2:26:0,13,13:0:0:13,13:466,460:-75.8314,-37.822,-33.9086,-38.3654,0,-34.452	2/2:7:0,0,7:0:0:0,7:0,252:-23.029,-23.029,-23.029,-2.10721,-2.10721,0	1/2:89:0,29,59:0:0:29,59:1027,2104:-255.167,-171.509,-162.779,-83.653,0,-65.8923	1/2:33:0,15,17:0:0:15,17:529,589:-91.03,-47.951,-43.4356,-43.1607,0,-38.0432	1/1:8:0,8,0:0:0:8,0:273,0:-24.9002,-2.40824,0,-24.9002,-2.40824,-24.9002	1/2:11:0,9,2:0:0:9,2:3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chr08	6323138	.	C	T	26397.2	PASS	AB=0.504737;ABP=3.60691;AC=36;AF=0.191489;AN=188;AO=1554;CIGAR=1X;DP=8019;DPB=8019;DPRA=1.16236;EPP=3325.56;EPPR=13905.1;GTI=1;LEN=1;MEANALT=1.02381;MQM=60;MQMR=59.9972;NS=94;NUMALT=1;ODDS=0.378385;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55550;QR=230362;RO=6462;RPL=6;RPP=3325.56;RPPR=13905.1;RPR=1548;RUN=1;SAF=1554;SAP=3377.48;SAR=0;SRF=6462;SRP=14035.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:129:129,0:129:4597:0:0:0,-38.8329,-413.895	0/1:113:60,53:60:2156:53:1908:-137.981,0,-160.291	0/0:158:157,0:157:5563:0:0:0,-47.2617,-500.438	0/1:65:47,18:47:1672:18:648:-39.0849,0,-131.2	0/1:30:12,18:12:428:18:629:-47.9029,0,-29.8279	0/0:78:77,0:77:2744:0:0:0,-23.1793,-246.843	0/0:99:99,0:99:3505:0:0:0,-29.802,-315.662	0/0:87:87,0:87:3086:0:0:0,-26.1896,-277.933	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/0:73:73,0:73:2595:0:0:0,-21.9752,-233.799	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:84:84,0:84:2986:0:0:0,-25.2865,-268.972	0/0:62:62,0:62:2198:0:0:0,-18.6639,-198.085	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.116	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:161:161,0:161:5751:0:0:0,-48.4658,-517.707	0/0:110:110,0:110:3922:0:0:0,-33.1133,-353.173	0/1:220:72,148:72:2551:148:5291:-410.099,0,-163.615	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/1:138:76,62:76:2719:62:2217:-158.252,0,-203.411	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/1:264:137,127:137:4888:127:4524:-327.855,0,-360.602	0/1:179:99,80:99:3525:80:2843:-202.223,0,-263.575	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:288:288,0:288:10257:0:0:0,-86.6966,-923.063	0/0:140:137,2:137:4886:2:68:0,-35.7386,-433.429	0/1:82:43,39:43:1540:39:1385:-100.262,0,-114.209	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/0:3:3,0:3:86:0:0:0,-0.90309,-8.02562	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:217:217,0:217:7714:0:0:0,-65.3235,-694.297	0/1:265:141,124:141:5025:124:4447:-320.626,0,-372.624	0/1:54:22,32:22:784:32:1144:-87.0139,0,-54.6283	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:95:53,42:53:1896:42:1500:-106.697,0,-142.32	0/1:42:18,24:18:644:24:864:-65.4393,0,-45.6473	0/1:130:69,61:69:2455:61:2175:-156.882,0,-182.071	0/1:63:37,26:37:1328:26:928:-64.8734,0,-100.857	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:90:42,48:42:1504:48:1717:-127.722,0,-108.562	0/1:72:45,27:45:1616:27:968:-65.7632,0,-124.056	0/1:76:34,42:34:1216:42:1501:-112.505,0,-86.8683	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.076	0/0:199:198,1:198:7060:1:36:0,-56.3067,-631.864	0/0:126:126,0:126:4496:0:0:0,-37.9298,-404.81	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:87:32,55:32:1152:55:1948:-149.404,0,-77.8005	0/1:13:8,5:8:280:5:180:-12.6387,0,-21.6259	0/1:24:13,11:13:464:11:396:-28.758,0,-34.8728	0/1:66:36,30:36:1280:30:1070:-76.7433,0,-95.6353	0/1:43:24,19:24:852:19:684:-48.946,0,-64.0561	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:15:5,10:5:180:10:351:-27.4112,0,-12.0366	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:107:106,1:106:3783:1:36:0,-28.6119,-337.071	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:207:86,121:86:3063:121:4330:-327.561,0,-213.586	0/0:165:165,0:165:5869:0:0:0,-49.6699,-528.324	0/0:92:92,0:92:3270:0:0:0,-27.6948,-294.521	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:103:102,1:102:3624:1:36:0,-27.4078,-322.77	0/1:70:21,49:21:743:49:1764:-137.972,0,-46.1212	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:83:83,0:83:2949:0:0:0,-24.9855,-265.643	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:56:56,0:56:1988:0:0:0,-16.8577,-179.194	0/1:46:18,28:18:640:28:1008:-77.189,0,-44.0819	0/0:97:97,0:97:3458:0:0:0,-29.1999,-311.432	0/0:182:182,0:182:6462:0:0:0,-54.7875,-581.672	0/0:104:104,0:104:3700:0:0:0,-31.3071,-333.202	0/0:116:113,3:113:4030:3:108:0,-24.8443,-352.813	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:96:96,0:96:3430:0:0:0,-28.8989,-308.913	0/1:97:47,50:47:1664:50:1787:-131.912,0,-120.845	0/0:105:105,0:105:3751:0:0:0,-31.6081,-337.79	0/0:90:90,0:90:3223:0:0:0,-27.0927,-290.291	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:104:64,40:64:2284:40:1431:-97.7797,0,-174.515	0/0:157:156,1:156:5567:1:36:0,-43.6634,-497.557	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:79:45,34:45:1596:34:1216:-85.9646,0,-120.149	0/0:66:66,0:66:2350:0:0:0,-19.868,-211.758	0/1:31:15,16:15:536:16:572:-42.4815,0,-39.2429	0/1:101:57,44:57:2036:44:1580:-112.088,0,-153.108	0/1:65:16,49:16:563:49:1756:-138.757,0,-31.4322	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884
chr08	6348801	.	G	A	12418.2	PASS	AB=0.479257;ABP=9.04605;AC=36;AF=0.193548;AN=186;AO=777;CIGAR=1X;DP=4598;DPB=4598;DPRA=0.935162;EPP=1690.24;EPPR=8298.03;GTI=0;LEN=1;MEANALT=1;MQM=54.2999;MQMR=59.9484;NS=93;NUMALT=1;ODDS=2.3905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27726;QR=136786;RO=3820;RPL=0;RPP=1690.24;RPPR=8298.03;RPR=777;RUN=1;SAF=777;SAP=1690.24;SAR=0;SRF=3820;SRP=8298.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:107:107,0:107:3816:0:0:0,-32.2102,-342.698	0/1:52:29,23:29:1036:23:824:-57.0143,0,-77.9004	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:16:9,7:9:324:7:252:-18.1798,0,-24.6894	0/1:18:9,9:9:324:9:324:-24.0167,0,-24.0873	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:97:97,0:97:3465:0:0:0,-29.1999,-312.061	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:65:65,0:65:2325:0:0:0,-19.5669,-209.506	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3561	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6437	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.985	0/1:46:20,26:20:705:26:913:-68.5223,0,-49.9254	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:43:25,18:25:896:18:644:-45.1403,0,-68.0161	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:176:97,79:97:3476:79:2817:-200.547,0,-260.068	0/1:104:61,43:61:2192:43:1540:-106.486,0,-166.184	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/0:147:147,0:147:5269:0:0:0,-44.2514,-474.334	0/0:141:138,3:138:4937:3:108:0,-32.3843,-434.418	0/1:77:39,38:39:1392:38:1360:-99.265,0,-102.398	0/1:8:2,6:2:72:6:216:-17.3542,0,-4.42848	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:6:3,3:3:89:3:108:-8.24366,0,-6.49818	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.606	0/1:78:45,33:45:1608:33:1184:-83.2244,0,-121.53	0/1:22:13,9:13:468:9:324:-22.809,0,-35.837	.:.:.:.:.:.:.:.	0/1:80:38,42:38:1368:42:1500:-110.944,0,-99.3384	0/1:11:6,5:6:216:5:180:-13.2173,0,-16.4792	0/1:38:14,24:14:504:24:860:-66.1683,0,-34.259	0/1:27:10,17:10:360:17:612:-46.8687,0,-24.6165	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:47:24,23:24:852:23:813:-59.2878,0,-62.852	0/1:53:37,16:37:1328:16:546:-33.2067,0,-103.859	0/1:104:56,48:56:2012:48:1712:-122.854,0,-150.046	0/0:126:126,0:126:4501:0:0:0,-37.9298,-405.258	0/0:132:132,0:132:4748:0:0:0,-39.736,-427.476	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.227	0/1:13:3,10:3:108:10:356:-28.3588,0,-6.16178	0/1:81:31,50:31:1116:50:1788:-136.196,0,-76.3683	0/1:42:25,17:25:896:17:608:-42.3857,0,-68.3171	0/1:5:2,3:2:72:3:108:-8.48102,0,-5.33157	0/1:38:20,18:20:705:18:644:-46.5453,0,-52.3336	0/1:16:5,11:5:172:11:381:-29.7805,0,-11.0015	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:20:15,5:15:540:5:176:-10.1603,0,-42.9159	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.964	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:106:65,41:65:2336:41:1468:-100.362,0,-178.59	0/0:155:155,0:155:5542:0:0:0,-46.6596,-498.897	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:27:26,0:26:928:0:0:0,-7.82678,-83.4785	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:88:38,50:38:1364:50:1788:-134.426,0,-96.5701	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2579	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.904	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.364	0/1:20:13,7:13:468:7:252:-16.9505,0,-36.439	0/0:92:92,0:92:3282:0:0:0,-27.6948,-295.597	0/0:94:94,0:94:3326:0:0:0,-28.2968,-299.555	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.416	0/1:5:1,4:1:36:4:144:-11.775,0,-2.09312	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:36:16,20:16:572:20:708:-52.6945,0,-40.9763	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.903	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:31:15,16:15:540:16:568:-42.0714,0,-39.6046	0/0:51:51,0:51:1821:0:0:0,-15.3525,-164.169	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:37:16,21:16:567:21:748:-56.3451,0,-40.2226	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:10:7,3:7:252:3:108:-7.0469,0,-20.0187	0/1:32:20,12:20:716:12:432:-29.5326,0,-55.1301	0/1:29:12,17:12:424:17:612:-46.4976,0,-29.7665	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136
chr08	6348818	.	C	T	12682.1	PASS	AB=0.477621;ABP=10.1052;AC=36;AF=0.193548;AN=186;AO=783;CIGAR=1X;DP=4635;DPB=4635;DPRA=0.951971;EPP=1685.95;EPPR=8162.43;GTI=0;LEN=1;MEANALT=1.02632;MQM=54.2708;MQMR=59.9571;NS=93;NUMALT=1;ODDS=2.35689;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28039;QR=138110;RO=3849;RPL=2;RPP=1685.95;RPPR=8162.43;RPR=781;RUN=1;SAF=783;SAP=1703.27;SAR=0;SRF=3849;SRP=8361.01;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:343:0:0:0,-3.0103,-31.2006	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.385	0/1:53:29,24:29:1040:24:863:-60.2832,0,-77.9598	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:17:9,8:9:324:8:288:-21.1126,0,-24.3883	0/1:19:10,9:10:360:9:324:-23.7157,0,-27.0247	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:99:99,0:99:3555:0:0:0,-29.802,-320.157	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:64:63,1:63:2253:1:36:0,-15.6702,-199.435	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1704	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6437	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.99	0/1:47:21,26:21:756:26:932:-69.9339,0,-54.2188	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:44:26,18:26:928:18:648:-45.1978,0,-70.5929	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:177:98,79:98:3516:79:2835:-201.78,0,-263.365	0/1:105:61,44:61:2196:44:1576:-109.418,0,-166.23	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:147:147,0:147:5272:0:0:0,-44.2514,-474.605	0/0:144:141,3:141:5032:3:108:0,-33.2874,-442.964	0/1:79:39,40:39:1400:40:1428:-104.776,0,-102.516	0/1:8:2,6:2:72:6:216:-17.3542,0,-4.42848	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:6:3,3:3:104:3:108:-8.24366,0,-7.89663	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:99:99,0:99:3564:0:0:0,-29.802,-320.965	0/1:79:45,34:45:1620:34:1209:-85.1204,0,-122.309	0/1:22:13,9:13:464:9:324:-22.809,0,-35.4748	.:.:.:.:.:.:.:.	0/1:85:40,45:40:1436:45:1612:-119.373,0,-103.946	0/1:11:6,5:6:216:5:180:-13.2173,0,-16.4792	0/1:38:14,24:14:500:24:855:-65.721,0,-33.897	0/1:27:10,17:10:360:17:612:-46.8687,0,-24.6165	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:47:24,23:24:860:23:828:-60.642,0,-63.5734	0/1:53:37,16:37:1323:16:572:-35.5498,0,-103.409	0/1:102:55,46:55:1976:46:1635:-116.576,0,-147.498	0/0:127:126,0:126:4536:0:0:0,-37.9298,-408.044	0/0:133:133,0:133:4772:0:0:0,-40.037,-429.636	0/0:60:60,0:60:2151:0:0:0,-18.0618,-193.856	0/1:13:3,10:3:108:10:360:-28.7204,0,-6.16178	0/1:81:32,49:32:1152:49:1760:-133.676,0,-79.6067	0/1:42:25,17:25:900:17:608:-42.3846,0,-68.6778	0/1:5:2,3:2:72:3:108:-8.48102,0,-5.33157	0/1:39:20,19:20:720:19:684:-49.8346,0,-53.3886	0/1:16:6,10:6:204:10:360:-27.9042,0,-13.8769	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:20:15,5:15:540:5:176:-10.1603,0,-42.9159	0/0:44:44,0:44:1575:0:0:0,-13.2453,-141.935	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:108:67,41:67:2403:41:1453:-98.4082,0,-184.015	0/0:156:155,0:155:5534:0:0:0,-46.6596,-497.818	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/1:88:38,50:38:1368:50:1788:-134.422,0,-96.9302	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.38	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.516	0/1:20:13,7:13:464:7:252:-16.9505,0,-36.0769	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.651	0/0:40:40,0:40:1422:0:0:0,-12.0412,-128.276	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.897	0/1:6:2,4:2:72:4:144:-11.474,0,-5.03054	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:35:16,19:16:572:19:684:-50.8418,0,-41.2774	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.543	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:31:15,16:15:540:16:576:-42.7917,0,-39.6046	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:37:16,21:16:576:21:752:-56.7012,0,-41.0369	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:10:7,3:7:252:3:108:-7.0469,0,-20.0187	0/1:32:20,12:20:720:12:432:-29.5326,0,-55.4912	0/1:29:12,17:12:432:17:605:-45.9653,0,-30.4913	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776
chr08	6360518	.	C	T	16527.7	PASS	AB=0.543879;ABP=32.929;AC=36;AF=0.193548;AN=186;AO=984;CIGAR=1X;DP=4660;DPB=4660;DPRA=1.29375;EPP=2139.74;EPPR=7965.8;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9776;MQMR=59.9943;NS=93;NUMALT=1;ODDS=1.94482;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35042;QR=129974;RO=3671;RPL=984;RPP=2139.74;RPPR=7974.49;RPR=0;RUN=1;SAF=984;SAP=2139.74;SAR=0;SRF=3670;SRP=7965.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:68:68,0:68:2410:0:0:0,-20.47,-217.156	0/1:42:17,25:17:589:25:891:-67.8662,0,-40.69	0/0:60:59,1:59:2062:1:36:0,-14.4635,-182.25	0/1:32:17,15:17:608:15:540:-39.3036,0,-45.4191	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.45	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5607	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:58:57,1:57:2035:1:36:0,-13.8615,-179.823	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3756	0/0:48:48,0:48:1680:0:0:0,-14.4494,-151.484	0/0:52:51,1:51:1823:1:35:0,-12.1621,-160.859	0/0:53:53,0:53:1861:0:0:0,-15.9546,-167.768	0/0:45:45,0:45:1575:0:0:0,-13.5463,-142.037	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:60:60,0:60:2123:0:0:0,-18.0618,-191.338	0/0:40:40,0:40:1406:0:0:0,-12.0412,-126.833	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:64:64,0:64:2260:0:0:0,-19.2659,-203.661	0/0:63:63,0:63:2232:0:0:0,-18.9649,-201.142	0/1:132:41,91:41:1459:91:3264:-254.244,0,-91.8693	0/0:33:33,0:33:1170:0:0:0,-9.93399,-105.606	0/1:35:22,12:22:784:12:428:-28.2642,0,-60.2892	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:150:80,70:80:2816:70:2503:-180.368,0,-208.525	0/1:89:40,49:40:1423:49:1746:-130.631,0,-101.575	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:117:116,1:116:4106:1:36:0,-31.6222,-366.128	0/0:36:35,1:35:1247:1:36:0,-7.2388,-108.936	0/1:74:43,31:43:1531:31:1103:-77.3036,0,-115.806	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	.:.:.:.:.:.:.:.	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:151:151,0:151:5339:0:0:0,-45.4555,-480.648	0/1:124:51,72:51:1792:72:2552:-192.691,0,-124.32	0/1:49:30,19:30:1072:19:662:-45.1519,0,-82.042	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:39:13,26:13:444:26:917:-71.1044,0,-28.5439	0/1:20:8,12:8:267:12:432:-33.2006,0,-18.3348	0/1:50:14,36:14:500:36:1292:-101.532,0,-30.2847	0/1:44:23,21:23:820:21:756:-55.1219,0,-60.8772	0/0:43:43,0:43:1481:0:0:0,-12.9443,-133.578	0/1:34:13,21:13:464:21:741:-56.7766,0,-31.8625	0/1:58:28,30:28:991:30:1080:-80.0535,0,-72.0438	0/1:87:48,39:48:1676:39:1384:-98.6672,0,-124.934	0/0:50:50,0:50:1782:0:0:0,-15.0515,-160.661	0/0:77:77,0:77:2735:0:0:0,-23.1793,-246.393	0/0:87:87,0:87:3107:0:0:0,-26.1896,-279.857	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:63:28,34:28:987:34:1220:-91.0831,0,-70.1196	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:11:1,10:1:36:10:348:-28.3432,0,-0.286945	0/1:41:12,29:12:432:29:1040:-81.5721,0,-26.879	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:25:25,0:25:863:0:0:0,-7.52575,-77.9814	0/0:90:90,0:90:3188:0:0:0,-27.0927,-287.146	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:120:57,63:57:2025:63:2256:-167.179,0,-146.397	0/0:93:92,1:92:3283:1:36:0,-24.3975,-292.092	0/0:36:36,0:36:1250:0:0:0,-10.8371,-112.798	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:51:50,0:50:1788:0:0:0,-15.0515,-160.843	0/1:64:17,47:17:608:47:1673:-131.589,0,-35.7861	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.966	0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8427	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/1:35:23,12:23:828:12:432:-28.6851,0,-64.3081	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.082	0/0:121:121,0:121:4295:0:0:0,-36.4246,-386.727	0/0:52:52,0:52:1836:0:0:0,-15.6536,-165.518	0/0:108:107,1:107:3828:1:36:0,-28.913,-341.119	0/1:10:3,7:3:108:7:240:-18.9225,0,-7.06487	0/0:74:73,1:73:2613:1:36:0,-18.6779,-231.818	0/1:62:26,36:26:932:36:1284:-97.1996,0,-65.535	0/0:84:83,1:83:2923:1:36:0,-21.6882,-259.707	0/0:88:87,0:87:3063:0:0:0,-26.1896,-275.54	0/0:40:40,0:40:1400:0:0:0,-12.0412,-126.294	0/1:64:32,32:32:1109:32:1132:-82.9227,0,-80.8486	0/0:105:104,1:104:3669:1:36:0,-28.0099,-326.815	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:62:33,29:33:1143:29:1019:-73.3574,0,-84.5081	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.272	0/1:35:25,10:25:879:10:342:-20.5731,0,-68.8907	0/1:57:26,31:26:924:31:1087:-80.9786,0,-66.3189	0/1:66:23,43:23:787:43:1531:-118.214,0,-51.2744	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:77:76,1:76:2699:1:36:0,-19.581,-239.557
chr08	6360527	.	CCGT	CCGA	76083.2	PASS	AB=0.446905;ABP=46.1302;AC=149;AF=0.801075;AN=186;AO=3578;CIGAR=3M1X;DP=4590;DPB=4608.5;DPRA=0;EPP=7772.54;EPPR=2144.08;GTI=1;LEN=1;MEANALT=1.23656;MQM=59.9933;MQMR=59.9777;NS=93;NUMALT=1;ODDS=1.96109;PAIRED=0;PAIREDR=0;PAO=16;PQA=513.5;PQR=513.5;PRO=16;QA=127068;QR=33763;RO=986;RPL=3578;RPP=7772.54;RPPR=2144.08;RPR=0;RUN=1;SAF=3578;SAP=7772.54;SAR=0;SRF=986;SRP=2144.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:249:-22.7039,-2.10721,0	1/1:68:0,68:0:0:68:2423:-218.266,-20.47,0	0/1:41:24,17:24:771:17:600:-41.987,0,-57.3462	1/1:56:1,55:1:35:55:1938:-171.135,-13.3591,0	0/1:31:15,16:15:507:16:567:-42.0288,0,-36.6189	0/1:6:4,2:4:141:2:72:-5.03054,0,-11.2307	1/1:44:0,43:0:0:43:1528:-137.453,-12.9443,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:38:0,38:0:0:38:1352:-121.863,-11.4391,0	1/1:55:2,53:2:65:53:1900:-165.105,-10.3834,0	1/1:23:0,23:0:0:23:802:-72.4974,-6.92369,0	1/1:44:0,44:0:0:44:1555:-140.241,-13.2453,0	1/1:53:1,52:1:35:52:1835:-161.879,-12.4632,0	1/1:52:0,52:0:0:52:1851:-166.753,-15.6536,0	1/1:44:0,44:0:0:44:1551:-139.881,-13.2453,0	1/1:33:0,32:0:0:32:1144:-103.055,-9.63296,0	1/1:58:0,58:0:0:58:2058:-185.431,-17.4597,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:26:0,25:0:0:25:884:-79.5188,-7.52575,0	1/1:64:0,64:0:0:64:2257:-203.392,-19.2659,0	1/1:59:0,59:0:0:59:2087:-187.982,-17.7608,0	0/1:133:90,41:90:3116:41:1468:-92.6786,0,-240.936	1/1:33:0,33:0:0:33:1184:-106.81,-9.93399,0	0/1:31:12,19:12:424:19:672:-51.4179,0,-29.109	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:151:73,77:73:2533:77:2722:-199.789,0,-182.788	0/1:84:47,34:47:1638:34:1220:-85.3268,0,-122.926	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:117:1,113:1:27:113:3981:-355.761,-31.8951,0	1/1:34:1,33:1:32:33:1172:-102.588,-7.03571,0	0/1:74:32,42:32:1095:42:1492:-112.298,0,-76.5783	0/1:5:4,1:4:137:1:36:-2.09312,0,-11.1622	1/1:5:0,4:0:0:4:140:-12.6346,-1.20412,0	0/1:4:2,2:2:64:2:72:-5.6326,0,-4.87454	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:148:1,146:1:36:146:5152:-460.265,-40.978,0	0/1:119:69,50:69:2406:50:1788:-125.321,0,-180.917	0/1:49:20,29:20:698:29:1040:-79.1639,0,-48.3933	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:37:25,12:25:866:12:420:-26.9408,0,-67.0591	0/1:20:12,8:12:423:8:284:-19.8828,0,-32.385	0/1:54:40,14:40:1357:14:500:-29.0806,0,-106.167	0/1:44:20,24:20:684:24:838:-62.4334,0,-48.5748	1/1:41:0,41:0:0:41:1446:-130.434,-12.3422,0	0/1:34:21,13:21:736:13:459:-31.4091,0,-56.3258	0/1:58:28,29:28:963:29:1040:-76.3377,0,-69.4033	0/1:88:40,47:40:1349:47:1680:-125.084,0,-95.2978	1/1:50:0,50:0:0:50:1775:-159.973,-15.0515,0	1/1:76:0,76:0:0:76:2680:-241.442,-22.8783,0	1/1:85:0,83:0:0:83:2933:-263.846,-24.9855,0	0/1:7:2,5:2:69:5:180:-14.4449,0,-4.44533	0/1:61:33,28:33:1125:28:999:-71.8037,0,-83.1311	0/1:8:6,2:6:207:2:72:-4.42848,0,-16.5593	0/0:12:11,1:11:359:1:36:0,-0.0140849,-29.028	0/1:39:27,12:27:921:12:428:-27.0635,0,-71.4001	0/1:6:3,3:3:92:3:104:-7.89663,0,-6.77723	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:24:0,23:0:0:23:816:-73.4021,-6.92369,0	1/1:87:0,87:0:0:87:3076:-277.071,-26.1896,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:121:63,56:63:2168:56:1984:-142.701,0,-159.252	1/1:95:1,92:1:36:92:3278:-291.651,-24.7524,0	1/1:35:0,35:0:0:35:1254:-113.165,-10.5361,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:53:0,53:0:0:53:1870:-168.519,-15.9546,0	0/1:65:48,17:48:1657:17:608:-35.4851,0,-129.848	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:67:0,66:0:0:66:2346:-211.186,-19.868,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:33:12,21:12:412:21:748:-57.7113,0,-27.4752	1/1:76:0,76:0:0:76:2715:-244.508,-22.8783,0	1/1:120:0,120:0:0:120:4280:-385.317,-36.1236,0	1/1:51:0,51:0:0:51:1819:-163.932,-15.3525,0	1/1:108:1,107:1:33:107:3816:-340.28,-29.2121,0	0/1:10:7,3:7:232:3:108:-7.06487,0,-18.1926	1/1:72:1,71:1:36:71:2540:-225.253,-18.0759,0	0/1:62:37,25:37:1273:25:891:-61.7874,0,-96.1479	1/1:83:0,83:0:0:83:2933:-264.205,-24.9855,0	1/1:87:0,87:0:0:87:3069:-276.44,-26.1896,0	1/1:39:0,38:0:0:38:1342:-120.738,-11.4391,0	0/1:62:32,30:32:1108:30:1042:-75.4241,0,-81.3627	1/1:103:1,102:1:36:102:3638:-323.848,-27.4078,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:62:29,33:29:981:33:1180:-87.8442,0,-69.9334	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	0/1:36:10,26:10:324:26:919:-72.1891,0,-18.6374	0/1:58:33,25:33:1091:25:892:-63.0814,0,-80.9694	0/1:64:43,21:43:1429:21:752:-48.7403,0,-109.631	1/1:46:0,46:0:0:46:1638:-147.708,-13.8474,0	1/1:73:0,72:0:0:72:2560:-230.439,-21.6742,0
chr08	6360784	.	G	A	18136.3	PASS	AB=0.446784;ABP=66.1049;AC=36;AF=0.191489;AN=188;AO=1159;CIGAR=1X;DP=6882;DPB=6882;DPRA=1.06352;EPP=2519.75;EPPR=12421.7;GTI=3;LEN=1;MEANALT=1;MQM=59.9612;MQMR=59.9699;NS=94;NUMALT=1;ODDS=0.821053;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41235;QR=203038;RO=5719;RPL=0;RPP=2519.75;RPPR=12421.7;RPR=1159;RUN=1;SAF=0;SAP=2519.75;SAR=1159;SRF=0;SRP=12421.7;SRR=5719;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.049	0/0:56:56,0:56:1968:0:0:0,-16.8577,-177.393	0/1:268:151,117:151:5368:117:4143:-292.379,0,-402.578	0/0:175:175,0:175:6189:0:0:0,-52.6802,-557.11	0/1:32:23,9:23:828:9:324:-19.8729,0,-65.2112	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:92:92,0:92:3250:0:0:0,-27.6948,-292.085	0/0:52:52,0:52:1832:0:0:0,-15.6536,-165.158	0/0:61:61,0:61:2187:0:0:0,-18.3628,-197.095	0/0:48:48,0:48:1700:0:0:0,-14.4494,-153.283	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.443	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.535	0/0:47:47,0:47:1653:0:0:0,-14.1484,-149.056	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.488	0/0:47:47,0:47:1664:0:0:0,-14.1484,-150.047	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:23:23,0:23:800:0:0:0,-6.92369,-72.3158	0/0:144:143,0:143:5072:0:0:0,-43.0473,-456.265	0/0:131:130,0:130:4565:0:0:0,-39.1339,-410.659	0/1:74:23,51:23:819:51:1830:-142.701,0,-51.7553	0/0:88:86,2:86:3080:2:72:0,-19.6539,-270.591	0/1:60:42,18:42:1475:18:634:-39.3245,0,-114.979	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/1:166:96,70:96:3409:70:2505:-175.731,0,-257.054	0/1:199:106,93:106:3776:93:3313:-238.482,0,-280.133	0/0:28:28,0:28:987:0:0:0,-8.42884,-89.143	0/0:236:236,0:236:8414:0:0:0,-71.0431,-757.264	0/0:116:114,2:114:4060:2:72:0,-28.0828,-358.75	0/1:37:27,10:27:972:10:352:-20.8801,0,-76.6575	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:161:161,0:161:5717:0:0:0,-48.4658,-514.651	0/1:88:42,46:42:1499:46:1644:-121.758,0,-108.713	0/1:34:18,16:18:636:16:567:-41.1257,0,-47.333	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:87:52,35:52:1853:35:1242:-85.8935,0,-140.858	0/1:36:22,14:22:792:14:504:-34.861,0,-60.7686	0/1:96:44,52:44:1563:52:1846:-137.519,0,-112.062	0/1:33:22,11:22:788:11:396:-26.0488,0,-61.3108	0/0:37:37,0:37:1310:0:0:0,-11.1381,-118.198	0/1:83:58,25:58:2065:25:892:-55.6142,0,-161.134	0/1:42:19,23:19:684:23:815:-61.0275,0,-49.2471	0/1:96:55,41:55:1959:41:1435:-100.543,0,-147.686	0/0:121:121,0:121:4285:0:0:0,-36.4246,-385.742	0/0:116:116,0:116:4055:0:0:0,-34.9195,-365.136	0/0:133:133,0:133:4733:0:0:0,-40.037,-426.127	0/1:7:4,3:4:144:3:94:-6.66265,0,-11.2064	0/1:146:88,58:88:3147:58:2040:-139.902,0,-239.505	0/1:50:35,15:35:1244:15:536:-33.5233,0,-97.2132	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:120:67,53:67:2372:53:1901:-135.244,0,-177.613	0/1:31:14,17:14:504:17:608:-45.7201,0,-36.3662	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:10:8,2:8:279:2:72:-3.82642,0,-22.4372	0/0:63:62,1:62:2220:1:36:0,-15.3666,-196.444	0/0:70:70,0:70:2478:0:0:0,-21.0721,-223.273	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:164:94,70:94:3337:70:2477:-173.811,0,-251.172	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.633	0/0:110:104,6:104:3691:6:216:0,-13.3228,-312.602	0/1:122:45,77:45:1612:77:2742:-210.296,0,-108.644	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.26	0/0:25:25,0:25:876:0:0:0,-7.52575,-79.1543	0/0:152:152,0:152:5364:0:0:0,-45.7566,-482.896	0/1:62:40,22:40:1420:22:792:-52.9418,0,-109.434	0/0:95:95,0:95:3345:0:0:0,-28.5978,-301.258	0/0:177:176,0:176:6233:0:0:0,-52.9813,-560.71	0/0:41:41,0:41:1451:0:0:0,-12.3422,-130.885	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:104:103,1:103:3640:1:36:0,-27.7088,-324.205	0/1:126:80,46:80:2850:46:1652:-111.039,0,-218.808	0/0:178:178,0:178:6362:0:0:0,-53.5833,-572.67	0/0:43:43,0:43:1500:0:0:0,-12.9443,-135.29	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.74	0/1:39:22,17:22:784:17:608:-43.3119,0,-59.1437	0/0:110:110,0:110:3889:0:0:0,-33.1133,-350.207	0/0:25:25,0:25:879:0:0:0,-7.52575,-79.1075	0/1:51:32,19:32:1136:19:667:-45.0021,0,-87.1964	0/0:63:63,0:63:2210:0:0:0,-18.9649,-199.161	0/1:31:17,14:17:603:14:504:-36.3662,0,-45.2676	0/1:87:42,45:42:1504:45:1592:-117.377,0,-109.465	0/1:56:18,38:18:644:38:1364:-106.203,0,-41.4329	0/0:134:133,1:133:4704:1:32:0,-37.1387,-420.322	0/0:71:70,0:70:2470:0:0:0,-21.0721,-222.344
chr08	6372753	.	T	C	6553.7	PASS	AB=0.46029;ABP=19.0488;AC=36;AF=0.195652;AN=184;AO=543;CIGAR=1X;DP=3902;DPB=3902;DPRA=0.732828;EPP=1182.12;EPPR=7279.62;GTI=5;LEN=1;MEANALT=1;MQM=35.9521;MQMR=46.178;NS=92;NUMALT=1;ODDS=1.09507;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=19089;QR=118623;RO=3359;RPL=0;RPP=1182.12;RPPR=2241.92;RPR=543;RUN=1;SAF=0;SAP=1182.12;SAR=543;SRF=747;SRP=2251.56;SRR=2612;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.806	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.0713	0/1:44:28,16:28:983:16:563:-34.4501,0,-75.3378	0/0:137:137,0:137:4861:0:0:0,-41.2411,-392.951	0/1:2:1,1:1:36:1:36:-2.78554,0,-2.99111	0/1:6:5,1:5:180:1:36:-1.58142,0,-14.7271	0/0:79:79,0:79:2810:0:0:0,-23.7814,-229.064	0/0:35:35,0:35:1224:0:0:0,-10.536,-110.053	0/0:31:31,0:31:1089:0:0:0,-9.33193,-97.7007	0/0:57:57,0:57:2018:0:0:0,-17.1587,-168.121	0/0:64:64,0:64:2240:0:0:0,-19.2659,-181.83	0/0:53:53,0:53:1862:0:0:0,-15.9546,-167.285	0/0:50:50,0:50:1738:0:0:0,-15.0515,-156.286	0/0:40:40,0:40:1403:0:0:0,-12.0412,-125.248	0/0:78:78,0:78:2748:0:0:0,-23.4803,-227.211	0/0:28:28,0:28:975:0:0:0,-8.42884,-87.4533	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.4918	0/0:31:31,0:31:1090:0:0:0,-9.33193,-98.2257	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0008	0/0:70:70,0:70:2475:0:0:0,-21.0721,-201.592	0/0:31:31,0:31:1100:0:0:0,-9.33193,-98.6289	0/1:26:7,19:7:248:19:676:-41.3755,0,-14.2488	0/0:39:39,0:39:1379:0:0:0,-11.7402,-120.566	0/1:26:16,10:16:567:10:356:-22.7411,0,-43.0914	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.1474	0/1:95:48,47:48:1708:47:1653:-93.6225,0,-119.806	0/1:70:38,32:38:1364:32:1132:-74.5562,0,-101.199	0/0:17:17,0:17:588:0:0:0,-5.11751,-53.183	0/0:90:90,0:90:3208:0:0:0,-27.0927,-277.612	0/0:32:32,0:32:1113:0:0:0,-9.63296,-100.061	0/1:42:28,14:28:988:14:496:-29.1105,0,-67.4436	0/1:4:3,1:3:104:1:36:-2.18348,0,-8.48725	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.3849	0/1:6:3,3:3:108:3:104:-7.41322,0,-8.14972	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/0:88:88,0:88:3070:0:0:0,-26.4906,-264.939	0/1:9:3,6:3:108:6:207:-14.9566,0,-7.35161	0/1:32:16,16:16:576:16:544:-36.7038,0,-42.2817	.:.:.:.:.:.:.:.	0/1:50:23,27:23:815:27:968:-67.0475,0,-58.2824	0/1:15:12,3:12:420:3:108:-5.15802,0,-32.9962	0/1:28:17,11:17:599:11:383:-24.533,0,-45.365	0/1:41:27,14:27:946:14:487:-29.5096,0,-64.5791	0/0:49:49,0:49:1739:0:0:0,-14.7505,-141.17	0/1:22:10,12:10:360:12:419:-23.8986,0,-25.154	0/1:26:14,12:14:488:12:432:-29.0981,0,-36.37	0/1:78:47,31:47:1664:31:1095:-68.8495,0,-111.408	0/0:52:52,0:52:1847:0:0:0,-15.6536,-149.965	0/0:102:102,0:102:3614:0:0:0,-30.7051,-297.202	0/0:22:22,0:22:783:0:0:0,-6.62266,-69.2565	0/1:12:6,6:6:216:6:199:-13.8365,0,-14.579	0/1:19:11,8:11:392:8:284:-18.75,0,-28.6695	0/1:32:22,10:22:784:10:338:-15.8516,0,-57.9404	0/1:5:1,4:1:36:4:140:-10.7655,0,-2.08802	0/1:47:23,24:23:824:24:832:-57.0238,0,-60.2315	0/1:11:8,3:8:288:3:108:-6.17395,0,-20.3853	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.106	0/1:9:4,5:4:140:5:176:-11.2206,0,-9.67721	0/0:32:32,0:32:1126:0:0:0,-9.63296,-101.246	0/0:103:103,0:103:3599:0:0:0,-31.0061,-290.668	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.19878	0/1:80:38,42:38:1356:42:1500:-85.6404,0,-93.832	0/0:105:105,0:105:3693:0:0:0,-31.6081,-307.106	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.066	0/0:35:35,0:35:1244:0:0:0,-10.536,-102.864	0/0:82:80,2:80:2839:2:72:0,-18.248,-227.445	0/1:64:25,39:25:891:39:1377:-97.9158,0,-55.2944	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.0049	0/0:19:19,0:19:668:0:0:0,-5.71957,-59.3339	0/0:21:21,0:21:740:0:0:0,-6.32163,-62.7679	0/0:20:19,1:19:680:1:36:0,-2.633,-48.256	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.3016	0/1:49:34,15:34:1194:15:540:-30.8072,0,-92.4779	0/0:43:43,0:43:1519:0:0:0,-12.9443,-135.683	0/0:131:131,0:131:4661:0:0:0,-39.4349,-368.747	0/0:16:16,0:16:560:0:0:0,-4.81648,-50.6659	0/0:64:64,0:64:2280:0:0:0,-19.2659,-204.425	0/1:7:1,6:1:32:6:216:-16.5246,0,-1.04132	0/0:35:35,0:35:1233:0:0:0,-10.536,-110.592	0/1:43:19,24:19:680:24:843:-59.1423,0,-48.2922	0/0:94:93,1:93:3293:1:36:0,-24.9092,-282.341	0/0:64:64,0:64:2277:0:0:0,-19.2659,-183.372	0/0:85:85,0:85:2989:0:0:0,-25.5875,-239.322	0/1:22:14,8:14:488:8:275:-17.1171,0,-31.9036	0/0:94:94,0:94:3303:0:0:0,-28.2968,-265.632	0/0:8:8,0:8:276:0:0:0,-2.40824,-24.5029	0/1:40:26,14:26:906:14:500:-30.4208,0,-69.2516	0/0:36:36,0:36:1258:0:0:0,-10.8371,-112.665	0/1:29:18,11:18:623:11:374:-23.5767,0,-47.5952	0/1:37:17,20:17:591:20:678:-47.0199,0,-42.1194	0/1:43:19,24:19:676:24:834:-58.1316,0,-42.8095	0/0:64:64,0:64:2247:0:0:0,-19.2659,-189.554	0/0:101:101,0:101:3536:0:0:0,-30.404,-282.719
chr08	6379163	.	T	G	119878	PASS	AB=0.506429;ABP=6.83539;AC=36;AF=0.191489;AN=188;AO=5430;CIGAR=1X;DP=28000;DPB=28000;DPRA=1.40313;EPP=11794.1;EPPR=48965.4;GTI=0;LEN=1;MEANALT=1.10417;MQM=51.3645;MQMR=59.9664;NS=94;NUMALT=1;ODDS=16.9039;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191038;QR=801531;RO=22560;RPL=2793;RPP=12.7423;RPPR=45.704;RPR=2637;RUN=1;SAF=2793;SAP=12.7423;SAR=2637;SRF=11612;SRP=45.448;SRR=10948;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:199:199,0:199:7078:0:0:0,-59.905,-637.079	0/0:369:368,1:368:13042:1:36:0,-108.344,-1170.86	0/1:393:184,209:184:6491:209:7399:-539.684,0,-465.974	0/0:588:588,0:588:20876:0:0:0,-177.006,-1878.33	0/1:225:105,119:105:3727:119:4208:-306.996,0,-267.835	0/1:149:80,69:80:2840:69:2411:-165.258,0,-210.976	0/0:307:307,0:307:10916:0:0:0,-92.4162,-982.34	0/0:553:552,0:552:19585:0:0:0,-166.169,-1761.83	0/0:435:435,0:435:15435:0:0:0,-130.948,-1388.67	0/0:198:198,0:198:6999:0:0:0,-59.6039,-629.041	0/0:160:160,0:160:5692:0:0:0,-48.1648,-512.395	0/0:245:245,0:245:8680:0:0:0,-73.7523,-781.201	0/0:204:204,0:204:7192:0:0:0,-61.4101,-647.335	0/0:179:179,0:179:6322:0:0:0,-53.8844,-569.078	0/0:228:228,0:228:8099:0:0:0,-68.6348,-728.919	0/0:147:146,0:146:5180:0:0:0,-43.9504,-465.983	0/0:142:141,0:141:4968:0:0:0,-42.4452,-446.895	0/0:159:159,0:159:5638:0:0:0,-47.8638,-507.526	0/0:118:118,0:118:4158:0:0:0,-35.5215,-374.406	0/0:595:594,1:594:21141:1:36:0,-175.515,-1898.57	0/0:451:451,0:451:15968:0:0:0,-135.765,-1436.81	0/1:263:95,168:95:3386:168:5916:-450.415,0,-225.784	0/0:428:428,0:428:15237:0:0:0,-128.841,-1371.06	0/1:343:205,138:205:7251:138:4839:-324.634,0,-549.393	0/0:278:278,0:278:9907:0:0:0,-83.6863,-891.57	0/1:953:483,470:483:17182:470:16572:-1191.37,0,-1259.13	0/1:843:409,434:409:14554:434:15212:-1099.79,0,-1055.83	0/0:88:88,0:88:3122:0:0:0,-26.4906,-281.207	0/0:731:730,1:730:25970:1:36:0,-216.486,-2333.02	0/0:357:348,9:348:12317:9:324:0,-78.3842,-1079.3	0/1:405:211,194:211:7533:194:6771:-481.527,0,-556.009	0/1:22:13,9:13:464:9:305:-21.0546,0,-35.4748	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:33:16,17:16:572:17:604:-44.4516,0,-41.8794	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:544:544,0:544:19265:0:0:0,-163.76,-1733.42	0/1:485:238,247:238:8445:247:8691:-622.142,0,-614.055	0/1:156:69,87:69:2440:87:3010:-219.018,0,-172.887	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:317:153,164:153:5476:164:5792:-417.256,0,-397.539	0/1:91:45,45:45:1608:45:1586:-113.641,0,-117.558	0/1:525:264,261:264:9412:261:9152:-656.353,0,-689.001	0/1:219:117,102:117:4166:102:3622:-256.116,0,-309.198	0/0:184:184,0:184:6560:0:0:0,-55.3895,-590.483	0/1:322:165,157:165:5877:157:5530:-396.665,0,-432.11	0/1:413:215,198:215:7646:198:6969:-490.048,0,-563.854	0/1:530:271,259:271:9657:259:9093:-652.082,0,-709.484	0/0:350:350,0:350:12421:0:0:0,-105.36,-1117.7	0/0:466:465,1:465:16518:1:29:0,-137.38,-1483.4	0/0:475:475,0:475:16867:0:0:0,-142.989,-1517.02	0/1:21:10,11:10:352:11:396:-29.3897,0,-25.6966	0/1:329:158,171:158:5606:171:6045:-436.06,0,-405.628	0/1:188:94,94:94:3345:94:3302:-238.706,0,-244.673	0/1:55:35,20:35:1252:20:699:-45.5803,0,-96.4284	0/1:562:309,253:309:10971:253:8897:-622.966,0,-818.089	0/1:156:84,72:84:2995:72:2500:-177.629,0,-222.821	0/0:39:39,0:39:1382:0:0:0,-11.7402,-124.677	0/1:54:24,30:24:843:30:1020:-75.2499,0,-59.9324	0/0:276:276,0:276:9823:0:0:0,-83.0843,-883.993	0/0:245:242,2:242:8607:2:72:0,-67.0673,-767.887	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.9615	0/1:537:272,265:272:9652:265:9390:-677.975,0,-706.922	0/0:774:770,4:770:27388:4:131:0,-220.949,-2452.01	0/0:218:218,0:218:7756:0:0:0,-65.6245,-698.057	0/0:275:275,0:275:9713:0:0:0,-82.7832,-874.127	0/0:605:598,7:598:21321:7:248:0,-160.499,-1896.73	0/1:457:144,313:144:5131:313:11042:-849.582,0,-324.361	0/0:92:92,0:92:3246:0:0:0,-27.6948,-292.291	0/0:218:218,0:218:7720:0:0:0,-65.6245,-694.839	0/0:189:189,0:189:6713:0:0:0,-56.8947,-604.192	0/0:80:80,0:80:2845:0:0:0,-24.0824,-256.287	0/0:279:279,0:279:9922:0:0:0,-83.9874,-892.924	0/1:213:96,117:96:3384:117:4107:-299.584,0,-240.655	0/0:508:508,0:508:18049:0:0:0,-152.923,-1623.53	0/0:486:485,0:485:17219:0:0:0,-146,-1548.37	0/0:453:452,1:452:16177:1:36:0,-132.886,-1452.13	0/0:321:318,3:318:11326:3:108:0,-86.6652,-1009.26	0/1:45:21,24:21:748:24:852:-63.2381,0,-54.0989	0/0:361:361,0:361:12875:0:0:0,-108.672,-1158.57	0/1:363:192,171:192:6847:171:6057:-426.006,0,-507.017	0/0:834:830,3:830:29548:3:104:0,-241.382,-2648.75	0/0:232:231,1:231:8155:1:36:0,-66.2407,-730.366	0/0:196:196,0:196:6943:0:0:0,-59.0019,-624.942	0/1:239:126,112:126:4473:112:3921:-276.873,0,-330.74	0/0:417:417,0:417:14759:0:0:0,-125.53,-1328.06	0/0:82:82,0:82:2915:0:0:0,-24.6845,-262.586	0/1:192:101,91:101:3586:91:3191:-222.354,0,-265.151	0/0:206:206,0:206:7343:0:0:0,-62.0122,-660.92	0/1:104:42,62:42:1495:62:2193:-161.553,0,-103.537	0/1:252:140,112:140:4948:112:3911:-272.038,0,-369.587	0/1:201:70,131:70:2476:131:4637:-352.83,0,-162.588	0/0:300:299,0:299:10687:0:0:0,-90.008,-961.529	0/0:310:310,0:310:11006: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chr08	6391590	.	A	G	167728	PASS	AB=0.577471;ABP=120.096;AC=155;AF=0.824468;AN=188;AO=6041;CIGAR=1X;DP=7004;DPB=7004;DPRA=0;EPP=225.646;EPPR=33.5745;GTI=2;LEN=1;MEANALT=1.06383;MQM=59.5421;MQMR=59.9519;NS=94;NUMALT=1;ODDS=6.05629;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=215460;QR=34321;RO=956;RPL=3413;RPP=224.516;RPPR=32.5296;RPR=2628;RUN=1;SAF=1;SAP=13112.2;SAR=6040;SRF=1;SRP=2070.26;SRR=955;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1072:-96.7809,-9.0309,0	1/1:98:0,98:0:0:98:3498:-314.515,-29.5009,0	0/1:60:17,43:17:612:43:1548:-121.397,0,-37.3516	1/1:169:0,168:0:0:168:6016:-541.156,-50.573,0	0/1:45:11,34:11:396:34:1211:-95.7474,0,-22.4364	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.6616	1/1:135:0,135:0:0:135:4753:-427.493,-40.6391,0	1/1:86:0,86:0:0:86:3034:-273.028,-25.8886,0	1/1:82:1,81:1:36:81:2874:-255.213,-21.0862,0	1/1:92:0,92:0:0:92:3273:-294.775,-27.6948,0	1/1:42:0,42:0:0:42:1512:-136.372,-12.6433,0	1/1:61:0,61:0:0:61:2117:-190.737,-18.3628,0	1/1:60:0,60:0:0:60:2152:-193.919,-18.0618,0	1/1:63:0,63:0:0:63:2244:-202.157,-18.9649,0	1/1:64:0,64:0:0:64:2296:-206.891,-19.2659,0	1/1:51:0,51:0:0:51:1808:-162.985,-15.3525,0	1/1:83:0,83:0:0:83:2937:-264.537,-24.9855,0	1/1:66:0,66:0:0:66:2357:-212.371,-19.868,0	1/1:51:0,51:0:0:51:1817:-163.785,-15.3525,0	1/1:133:0,133:0:0:133:4764:-428.783,-40.037,0	1/1:127:0,127:0:0:127:4529:-407.696,-38.2308,0	0/1:59:38,21:38:1356:21:756:-50.6065,0,-104.58	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:48:13,35:13:459:35:1237:-97.1733,0,-27.1946	1/1:36:0,36:0:0:36:1275:-114.972,-10.8371,0	0/1:192:69,123:69:2480:123:4399:-338.272,0,-165.655	0/1:109:59,50:59:2112:50:1796:-129.085,0,-157.537	1/1:33:1,32:1:36:32:1144:-99.6694,-6.33572,0	1/1:340:0,339:0:0:339:12101:-1088.48,-102.049,0	1/1:105:3,102:3:108:102:3646:-318.242,-21.533,0	0/1:73:29,44:29:1044:44:1572:-119.794,0,-72.2914	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:5:0,5:0:0:5:165:-15.1551,-1.50515,0	1/1:172:0,172:0:0:172:6166:-554.921,-51.7772,0	0/1:98:43,55:43:1548:55:1929:-144.378,0,-110.108	0/1:74:42,32:42:1508:32:1152:-81.7106,0,-113.738	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:53:22,31:22:792:31:1116:-84.7925,0,-55.6511	0/1:39:11,28:11:392:28:1008:-79.2824,0,-23.8799	0/1:89:31,58:31:1112:58:2076:-160.235,0,-73.5997	0/1:93:36,56:36:1296:56:1998:-152.022,0,-88.8893	1/1:48:0,48:0:0:48:1704:-153.636,-14.4494,0	0/1:69:15,54:15:540:54:1923:-152.574,0,-28.1655	0/1:80:33,47:33:1180:47:1680:-127.176,0,-82.4256	0/1:122:56,66:56:2016:66:2360:-175.933,0,-144.987	1/1:86:0,86:0:0:86:3072:-276.687,-25.8886,0	1/1:110:0,110:0:0:110:3917:-352.621,-33.1133,0	1/1:73:0,73:0:0:73:2587:-233.07,-21.9752,0	0/1:4:1,3:1:36:3:108:-8.86863,0,-2.39415	0/1:74:29,45:29:1040:45:1608:-122.695,0,-71.6381	0/1:27:18,9:18:648:9:320:-21.0136,0,-50.5241	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:93:38,55:38:1368:55:1966:-149.179,0,-95.425	0/1:15:7,8:7:252:8:262:-19.3798,0,-18.5135	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:65:0,65:0:0:65:2299:-206.029,-19.567,0	1/1:142:1,141:1:36:141:5052:-451.2,-39.148,0	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	0/1:184:68,115:68:2427:115:4088:-312.77,0,-163.353	1/1:127:0,127:0:0:127:4519:-406.863,-38.2308,0	1/1:45:1,44:1:36:44:1561:-137.049,-9.94808,0	1/1:67:0,67:0:0:67:2399:-216.136,-20.169,0	1/1:112:0,112:0:0:112:3989:-359.185,-33.7154,0	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.2574	1/1:24:0,24:0:0:24:849:-76.7232,-7.22472,0	1/1:62:0,62:0:0:62:2228:-200.453,-18.6639,0	1/1:70:0,70:0:0:70:2507:-225.878,-21.0721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:91:0,91:0:0:91:3255:-293.085,-27.3937,0	0/1:45:15,30:15:540:30:1076:-83.1696,0,-35.3902	1/1:103:0,103:0:0:103:3659:-329.468,-31.0061,0	1/1:220:0,220:0:0:220:7853:-706.776,-66.2266,0	1/1:92:1,90:1:36:90:3215:-285.773,-24.1545,0	1/1:66:0,66:0:0:66:2353:-212.003,-19.868,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:98:0,98:0:0:98:3516:-316.637,-29.5009,0	0/1:78:27,51:27:972:51:1802:-138.888,0,-64.3176	1/1:189:0,189:0:0:189:6749:-607.258,-56.8947,0	1/1:91:0,91:0:0:91:3237:-291.546,-27.3937,0	1/1:58:0,58:0:0:58:2073:-186.835,-17.4597,0	0/1:77:27,50:27:972:50:1772:-136.572,0,-64.6186	1/1:157:0,157:0:0:157:5632:-506.959,-47.2617,0	1/1:51:0,51:0:0:51:1800:-162.124,-15.3525,0	0/1:86:48,38:48:1715:38:1364:-97.1135,0,-128.746	1/1:63:0,63:0:0:63:2268:-204.358,-18.9649,0	0/1:35:18,17:18:648:17:612:-44.8728,0,-48.1158	0/1:89:43,46:43:1548:46:1637:-120.82,0,-112.803	0/1:57:41,16:41:1476:16:572:-34.6524,0,-115.977	1/1:103:0,103:0:0:103:3686:-331.937,-31.0061,0	1/1:96:1,93:1:36:93:3323:-295.663,-25.0584,0
chr08	6405286	.	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chr08	6405307	.	CTG	TTG	15019.9	PASS	AB=0.339382;ABP=706.842;AC=32;AF=0.170213;AN=188;AO=1081;CIGAR=1X2M;DP=8990;DPB=8990.67;DPRA=1.01849;EPP=2350.37;EPPR=12822.6;GTI=11;LEN=1;MEANALT=2.23684;MQM=59.9889;MQMR=59.5661;NS=94;NUMALT=1;ODDS=0.0213503;PAIRED=0;PAIREDR=0;PAO=1;PQA=18;PQR=0;PRO=0;QA=38522;QR=260898;RO=7511;RPL=1081;RPP=2350.37;RPPR=12822.6;RPR=0;RUN=1;SAF=1081;SAP=2350.37;SAR=0;SRF=7511;SRP=16312.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:44,0:44:1527:0:0:0,-13.2453,-137.283	0/0:56:56,0:56:1932:0:0:0,-16.8577,-174.152	0/1:154:95,56:95:3296:56:2004:-134.844,0,-250.957	0/0:253:243,0:243:8518:0:0:0,-73.1503,-766.115	0/0:40:32,3:32:1105:3:104:0,-1.17802,-90.0539	0/1:17:15,2:15:527:2:72:-1.71921,0,-42.643	0/0:93:90,0:90:3072:0:0:0,-27.0927,-276.38	0/0:114:107,0:107:3722:0:0:0,-32.2102,-334.374	0/0:54:52,0:52:1800:0:0:0,-15.6536,-161.938	0/0:88:82,0:82:2865:0:0:0,-24.6845,-257.66	0/0:67:60,0:60:2071:0:0:0,-18.0618,-186.286	0/0:76:76,0:76:2630:0:0:0,-22.8783,-236.946	0/0:83:77,0:77:2710:0:0:0,-23.1793,-243.771	0/0:62:60,0:60:2041:0:0:0,-18.0618,-183.599	0/0:54:51,0:51:1793:0:0:0,-15.3525,-161.304	0/0:60:58,0:58:2007:0:0:0,-17.4597,-180.542	0/0:36:36,0:36:1243:0:0:0,-10.8371,-112.167	0/0:34:32,0:32:1143:0:0:0,-9.63296,-102.862	0/0:27:24,0:24:825:0:0:0,-7.22472,-74.1857	0/0:122:121,0:121:4219:0:0:0,-36.4246,-379.452	0/0:198:188,0:188:6491:0:0:0,-56.5936,-583.912	0/1:81:58,21:58:2031:21:738:-42.6085,0,-158.854	0/0:85:84,0:84:2931:0:0:0,-25.2865,-263.706	0/1:38:27,10:27:932:10:360:-21.328,0,-72.7707	0/0:21:21,0:21:745:0:0:0,-6.32163,-67.3521	0/1:175:87,78:87:2948:78:2784:-200.785,0,-215.376	0/1:173:100,64:100:3432:64:2287:-156.37,0,-259.382	0/0:36:36,0:36:1255:0:0:0,-10.8371,-113.249	0/0:261:260,0:260:9080:0:0:0,-78.2678,-816.735	0/0:99:95,2:95:3284:2:72:0,-22.713,-288.958	0/1:95:58,35:58:2002:35:1256:-85.0511,0,-152.159	0/0:75:66,3:66:2290:3:108:0,-11.0547,-196.239	0/0:156:151,0:151:5252:0:0:0,-45.4555,-472.505	0/0:178:154,0:154:5393:0:0:0,-46.3586,-485.029	0/0:189:158,0:158:5445:0:0:0,-47.5627,-488.396	0/0:141:128,0:128:4475:0:0:0,-38.5318,-402.295	0/0:130:128,0:128:4431:0:0:0,-38.5318,-398.611	0/1:79:46,33:46:1634:33:1161:-81.0134,0,-123.52	0/1:64:41,20:41:1406:20:716:-46.0583,0,-108.031	0/0:78:71,0:71:2482:0:0:0,-21.3731,-223.176	0/1:132:76,56:76:2653:56:1993:-139.848,0,-199.154	0/1:30:20,9:20:703:9:320:-20.089,0,-54.5193	0/1:83:65,13:65:2246:13:464:-18.2769,0,-178.478	0/1:66:46,20:46:1602:20:711:-44.4477,0,-124.542	0/0:72:71,0:71:2434:0:0:0,-21.3731,-218.926	0/1:52:36,13:36:1210:13:460:-26.6283,0,-94.0896	0/1:74:45,20:45:1524:20:705:-43.8619,0,-117.536	0/1:104:52,45:52:1836:45:1612:-115.816,0,-135.937	0/0:45:43,0:43:1504:0:0:0,-12.9443,-135.292	0/0:172:159,0:159:5457:0:0:0,-47.8638,-490.834	0/0:54:50,0:50:1728:0:0:0,-15.0515,-155.485	0/0:149:139,4:139:4891:4:144:0,-30.0882,-426.628	0/1:76:53,21:53:1874:21:743:-44.5578,0,-146.284	0/1:62:42,19:42:1460:19:684:-43.1677,0,-112.966	0/1:99:80,9:80:2802:9:324:-2.35866,0,-225.082	0/1:214:148,60:148:5103:60:2115:-127.655,0,-396.176	0/1:23:16,5:16:552:5:180:-9.87337,0,-43.3291	0/0:84:76,0:76:2613:0:0:0,-22.8783,-235.001	0/1:22:11,9:11:383:9:320:-22.7627,0,-28.4248	0/0:39:39,0:39:1335:0:0:0,-11.7402,-120.444	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.042	0/0:82:76,0:76:2696:0:0:0,-22.8783,-242.334	0/1:327:172,146:172:5969:146:5201:-372.156,0,-441.259	0/0:88:88,0:88:3068:0:0:0,-26.4906,-276.344	0/0:53:53,0:53:1838:0:0:0,-15.9546,-165.583	0/0:114:108,0:108:3645:0:0:0,-32.5112,-327.929	0/0:120:118,2:118:4072:2:72:0,-29.2869,-359.591	0/1:169:102,63:102:3538:63:2243:-152.154,0,-268.484	0/0:33:28,0:28:965:0:0:0,-8.42884,-86.8144	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.351	0/0:50:47,1:47:1626:1:36:0,-11.1985,-143.052	0/0:86:79,0:79:2724:0:0:0,-23.7814,-244.779	0/0:84:78,0:78:2716:0:0:0,-23.4803,-244.341	0/1:60:27,32:27:943:32:1140:-84.7887,0,-67.028	0/0:115:113,0:113:3893:0:0:0,-34.0164,-350.228	0/0:251:246,0:246:8612:0:0:0,-74.0534,-774.748	0/0:37:31,0:31:1098:0:0:0,-9.33193,-98.6376	0/0:151:147,0:147:5137:0:0:0,-44.2514,-462.139	0/1:169:127,14:127:4431:14:500:-2.53214,0,-355.888	0/0:107:106,0:106:3670:0:0:0,-31.9092,-330.148	0/1:142:90,49:90:3173:49:1743:-114.979,0,-243.446	0/0:160:157,0:157:5479:0:0:0,-47.2617,-492.652	0/0:35:35,0:35:1232:0:0:0,-10.536,-111.098	0/0:59:56,0:56:1938:0:0:0,-16.8577,-174.334	0/1:38:25,13:25:856:13:468:-31.0205,0,-65.8829	0/0:100:98,0:98:3342:0:0:0,-29.5009,-300.645	0/0:13:12,0:12:404:0:0:0,-3.61236,-36.3248	0/1:73:43,27:43:1468:27:972:-66.366,0,-110.972	0/0:51:47,0:47:1653:0:0:0,-14.1484,-148.718	0/1:53:37,12:37:1294:12:432:-24.1207,0,-101.64	0/1:130:80,46:80:2752:46:1630:-108.701,0,-209.559	0/1:67:21,46:21:743:46:1648:-128.44,0,-46.983	0/0:262:259,0:259:9025:0:0:0,-77.9668,-811.926	0/0:75:74,0:74:2605:0:0:0,-22.2762,-234.34
chr08	6405339	.	GACGAACATC	GACGAACTTC,GACGGACTTC,AACGAACTTC,GACGTACTTC	115641	PASS	AB=0.561202,0.284782,0.103138,0.113194;ABP=132.984,989.099,5321.89,3539.15;AC=129,26,20,10;AF=0.68617,0.138298,0.106383,0.0531915;AN=188;AO=4302,701,480,345;CIGAR=7M1X2M,4M1X2M1X2M,1X6M1X2M,4M1X2M1X2M;DP=6257;DPB=6261.6;DPRA=0,1.02699,1.35099,1.1986;EPP=9344.68,1525.21,1045.32,752.168;EPPR=359.132;GTI=10;LEN=1,10,10,10;MEANALT=4.14894,5.10256,4.26744,4.92453;MQM=58.3752,59.9743,42.1521,49.458;MQMR=59.9756;NS=94;NUMALT=4;ODDS=3040.24;PAIRED=0,0,0,0;PAIREDR=0;PAO=1,1,1,1;PQA=0,0,0,0;PQR=0;PRO=1;QA=153388,24748,16916,12104;QR=5743;RO=164;RPL=211,0,0,206;RPP=7601.85,1525.21,1045.32,31.2646;RPPR=359.132;RPR=4091,701,480,139;RUN=1,1,1,1;SAF=211,0,0,206;SAP=7601.85,1525.21,1045.32,31.2646;SAR=4091,701,480,139;SRF=0;SRP=359.132;SRR=164;TYPE=snp,complex,complex,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/3:57:6,33,0,8,7:6:212:33,0,8,7:1167,0,288,251:-97.6539,-4.71078,-12.0436,-99.4601,-21.9776,-116.726,-77.4798,0,-94.7456,-92.3374,-79.0875,-1.60329,-96.3537,-74.3733,-94.2465	1/3:37:3,29,0,4,1:3:108:29,0,4,1:1040,0,144,35:-86.0839,-2.16572,-2.25407,-86.9869,-10.9839,-95.7995,-75.9979,0,-84.8103,-83.6062,-84.1534,-8.15018,-92.966,-81.9769,-92.665	1/2:63:0,29,20,7,7:0:0:29,20,7,7:1036,710,237,237:-142.051,-57.8663,-49.1365,-84.1982,0,-78.1776,-123.987,-39.8043,-66.1352,-121.88,-122.954,-38.7688,-65.1008,-104.89,-120.846	1/4:171:1,129,0,8,15:1:35:129,0,8,15:4624,0,279,538:-417.599,-40.8535,-4.86836,-417.9,-43.7012,-420.748,-395.73,-21.5321,-398.578,-396.17,-374.203,0,-377.051,-354.881,-372.535	1/3:19:0,14,1,4,0:0:0:14,1,4,0:504,36,144,0:-52.2625,-11.2613,-7.04685,-49.3249,-8.32119,-49.0239,-40.9932,0,-38.0557,-39.7891,-52.2625,-11.2613,-49.3249,-40.9932,-52.2625	1/3:14:0,5,4,4,0:0:0:5,4,4,0:180,139,144,0:-26.3991,-11.7247,-10.2195,-15.1004,-0.425428,-13.8963,-14.6796,0,-3.38088,-13.4755,-26.3991,-11.7247,-15.1004,-14.6796,-26.3991	1/1:44:0,41,0,2,1:0:0:41,0,2,1:1476,0,72,30:-132.801,-12.3422,0,-132.801,-12.3422,-132.801,-127.09,-6.59682,-127.09,-126.487,-130.405,-9.96179,-130.405,-124.694,-130.104	1/4:69:6,41,0,9,10:6:204:41,0,9,10:1459,0,320,352:-128.601,-11.7017,-15.9062,-130.407,-28.2484,-146.953,-105.935,-3.77653,-122.481,-119.772,-102.162,0,-118.708,-94.2367,-115.698	1/3:65:0,55,0,7,0:0:0:55,0,7,0:1928,0,252,0:-174.73,-19.2374,-2.68077,-174.73,-19.2374,-174.73,-155.497,0,-155.497,-153.389,-174.73,-19.2374,-174.73,-155.497,-174.73	1/1:66:0,56,0,6,2:0:0:56,0,6,2:1986,0,212,65:-178.591,-16.8577,0,-178.591,-16.8577,-178.591,-161.759,-0.00166013,-161.759,-159.953,-173.376,-11.643,-173.376,-156.543,-172.774	1/3:36:0,29,0,6,0:0:0:29,0,6,0:1036,0,192,0:-99.0718,-15.139,-6.40916,-99.0718,-15.139,-99.0718,-83.9637,0,-83.9637,-82.1576,-99.0718,-15.139,-99.0718,-83.9637,-99.0718	1/1:84:4,78,0,1,0:4:142:78,0,1,0:2786,0,36,0:-237.548,-11.9063,0,-238.752,-23.4803,-250.322,-236.004,-20.7354,-247.574,-247.273,-238.752,-23.4803,-250.322,-247.574,-250.322	1/1:77:4,67,0,2,2:4:140:67,0,2,2:2400,0,72,72:-203.011,-8.77875,0,-204.215,-20.169,-215.606,-198.72,-14.6761,-210.111,-209.509,-198.366,-14.3182,-209.757,-204.262,-209.155	1/1:34:0,29,0,1,2:0:0:29,0,1,2:1040,0,36,72:-93.5411,-8.72987,0,-93.5411,-8.72987,-93.5411,-90.6098,-5.79445,-90.6098,-90.3088,-87.7229,-2.90219,-87.7229,-84.7915,-87.1208	1/1:65:0,58,0,4,0:0:0:58,0,4,0:2088,0,144,0:-187.802,-17.4597,0,-187.802,-17.4597,-187.802,-176.46,-6.11687,-176.46,-175.255,-187.802,-17.4597,-187.802,-176.46,-187.802	1/1:36:0,36,0,0,0:0:0:36,0,0,0:1268,0,0,0:-114.419,-10.8371,0,-114.419,-10.8371,-114.419,-114.419,-10.8371,-114.419,-114.419,-114.419,-10.8371,-114.419,-114.419,-114.419	1/1:30:0,30,0,0,0:0:0:30,0,0,0:1072,0,0,0:-96.5024,-9.0309,0,-96.5024,-9.0309,-96.5024,-96.5024,-9.0309,-96.5024,-96.5024,-96.5024,-9.0309,-96.5024,-96.5024,-96.5024	1/1:34:0,33,0,0,0:0:0:33,0,0,0:1180,0,0,0:-106.097,-9.93399,0,-106.097,-9.93399,-106.097,-106.097,-9.93399,-106.097,-106.097,-106.097,-9.93399,-106.097,-106.097,-106.097	1/1:26:0,21,0,1,2:0:0:21,0,1,2:744,0,36,71:-66.9328,-6.32163,0,-66.9328,-6.32163,-66.9328,-64.0031,-3.38869,-64.0031,-63.7021,-61.1714,-0.553879,-61.1714,-58.2417,-60.5693	1/1:75:0,64,0,4,5:0:0:64,0,4,5:2291,0,144,176:-205.828,-19.2659,0,-205.828,-19.2659,-205.828,-194.678,-8.11832,-194.678,-193.474,-191.578,-5.01443,-191.578,-180.427,-190.073	1/1:145:0,139,0,6,0:0:0:139,0,6,0:4959,0,206,0:-445.33,-41.8432,0,-445.33,-41.8432,-445.33,-429.731,-25.921,-429.731,-427.925,-445.33,-41.8432,-445.33,-429.731,-445.33	1/2:65:7,15,23,2,9:7:241:15,23,2,9:536,821,72,320:-88.933,-47.3619,-62.4193,-24.1071,0,-36.756,-85.3788,-61.2733,-38.0183,-104.35,-65.0271,-40.9213,-17.6661,-78.9386,-81.8908	1/1:40:0,35,0,1,0:0:0:35,0,1,0:1248,0,36,0:-111.981,-10.5361,0,-111.981,-10.5361,-111.981,-109.05,-7.60478,-109.05,-108.749,-111.981,-10.5361,-111.981,-109.05,-111.981	1/2:37:0,25,11,1,0:0:0:25,11,1,0:900,381,36,0:-104.396,-30.9523,-23.4265,-73.4361,0,-70.1248,-101.465,-28.0199,-70.5049,-101.164,-104.396,-30.9523,-73.4361,-101.465,-104.396	1/3:21:0,17,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chr08	6405371	.	TGAAGTA	GGAAGTA,GAAAGTA,AGAAATA	95950.6	PASS	AB=0.583874,0.105528,0.0540654;ABP=200.803,3768.56,4124.24;AC=134,21,5;AF=0.712766,0.111702,0.0265957;AN=188;AO=4355,374,187;CIGAR=1X6M,2X5M,1X3M1X2M;DP=5913;DPB=5956.57;DPRA=0,1.42529,1.34921;EPP=9347.19,806.478,409.076;EPPR=1519.13;GTI=21;LEN=1,2,7;MEANALT=3.78723,3.97368,3.98551;MQM=58.6808,38.3021,51.4973;MQMR=59.9557;NS=94;NUMALT=3;ODDS=0.393494;PAIRED=0,0,0;PAIREDR=0;PAO=0.25,0.25,0;PQA=8,8,0;PQR=0;PRO=0;QA=155265,13186,6602;QR=25515;RO=722;RPL=4342,373,187;RPP=9347.19,806.478,409.076;RPPR=1519.13;RPR=13,1,0;RUN=1,1,1;SAF=0,0,0;SAP=9459.77,815.141,409.076;SAR=4355,374,187;SRF=0;SRP=1570.81;SRR=722;TYPE=snp,mnp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,39,10,1:0:0:39,10,1:1378,358,36:-139.48,-27.3666,-15.6265,-112.12,0,-109.11,-136.556,-24.4412,-109.196,-136.255	1/2:39:0,33,6,0:0:0:33,6,0:1184,216,0:-113.484,-16.911,-6.97697,-96.9158,0,-95.1096,-113.484,-16.911,-96.9158,-113.484	0/1:60:22,27,7,0:22:768:27,7,0:959,252,0:-71.5221,0,-54.3521,-58.9123,-43.2465,-119.273,-78.1448,-62.4799,-121.381,-140.614	1/1:166:1,143,5,5:1:36:143,5,5:5108,170,171:-455.752,-40.1094,0,-443.164,-30.1661,-444.597,-442.185,-29.1816,-432.235,-443.618	1/3:19:1,12,3,3:1:36:12,3,3:432,108,108:-40.6963,-5.79268,-5.11921,-32.6595,-0.39741,-34.6939,-32.2699,0,-26.8702,-34.3045	0/1:14:4,8,0,1:4:144:8,0,1:288,0,33:-22.2822,0,-9.36486,-23.4863,-11.7731,-35.2381,-20.8248,-9.11275,-32.5759,-32.2749	1/1:44:0,42,1,0:0:0:42,1,0:1490,36,0:-134.088,-12.6433,0,-131.308,-9.81684,-131.007,-134.088,-12.6433,-131.308,-134.088	1/2:57:0,48,9,0:0:0:48,9,0:1691,324,0:-162.512,-25.069,-10.6196,-137.784,0,-135.075,-162.512,-25.069,-137.784,-162.512	1/2:66:0,50,7,3:0:0:50,7,3:1787,241,108:-164.131,-18.4331,-3.38161,-145.716,0,-143.609,-155.342,-9.63278,-136.928,-154.439	1/2:63:0,55,6,0:0:0:55,6,0:1976,216,0:-178.248,-17.1462,-0.589523,-161.14,0,-159.334,-178.248,-17.1462,-161.14,-178.248	1/2:32:0,23,6,1:0:0:23,6,1:824,216,36:-84.0564,-16.8464,-9.9227,-67.2328,0,-65.4266,-81.1211,-13.9082,-64.2974,-80.82	1/1:86:0,81,1,3:0:0:81,1,3:2899,36,103:-260.518,-24.3834,0,-257.77,-21.6372,-257.469,-252.174,-16.0431,-249.426,-251.271	1/1:75:0,70,2,1:0:0:70,2,1:2499,72,36:-224.724,-21.0721,0,-219.229,-15.57,-218.627,-221.794,-18.1354,-216.299,-221.493	1/1:34:0,29,0,1:0:0:29,0,1:1032,0,31:-92.8552,-8.72987,0,-92.8552,-8.72987,-92.8552,-90.3772,-6.25646,-90.3772,-90.0762	1/1:64:0,58,3,3:0:0:58,3,3:2076,97,108:-186.731,-17.4597,0,-179.232,-9.98218,-178.329,-177.926,-8.63035,-170.427,-177.023	1/1:36:0,35,0,1:0:0:35,0,1:1251,0,36:-112.538,-10.5361,0,-112.538,-10.5361,-112.538,-109.628,-7.27027,-109.628,-109.327	1/1:28:0,25,0,2:0:0:25,0,2:896,0,72:-80.6355,-7.52575,0,-80.6355,-7.52575,-80.6355,-74.7766,-1.59102,-74.7766,-74.1745	1/1:35:0,34,0,1:0:0:34,0,1:1201,0,36:-107.982,-10.235,0,-107.982,-10.235,-107.982,-105.053,-6.94682,-105.053,-104.752	1/1:23:0,22,0,0:0:0:22,0,0:784,0,0:-70.4601,-6.62266,0,-70.4601,-6.62266,-70.4601,-70.4601,-6.62266,-70.4601,-70.4601	1/1:71:0,64,4,0:0:0:64,4,0:2267,133,0:-203.957,-19.2659,0,-193.557,-8.8717,-192.353,-203.957,-19.2659,-193.557,-203.957	1/1:140:0,129,6,2:0:0:129,6,2:4600,206,72:-413.488,-38.8329,0,-397.89,-23.2265,-396.083,-407.67,-33.0058,-392.071,-407.068	0/1:62:23,30,3,1:23:816:30,3,1:1068,108,36:-80.0178,0,-57.4523,-78.5004,-58.0422,-144.08,-84.0049,-63.5465,-142.047,-150.187	1/3:42:1,36,0,4:1:36:36,0,4:1268,0,144:-111.579,-8.82614,-0.926466,-111.88,-11.7635,-114.816,-100.139,0,-103.074,-101.87	0/1:39:11,28,0,0:11:386:28,0,0:1008,0,0:-79.2869,0,-23.3358,-82.5982,-31.7647,-114.01,-82.5982,-31.7647,-114.01,-114.01	1/2:19:0,14,4,1:0:0:14,4,1:504,124,31:-50.2541,-9.07928,-4.86486,-41.1714,0,-39.9672,-47.7766,-6.59544,-38.6955,-47.4756	0/1:119:59,56,4,0:59:2094:56,4,0:1992,144,0:-144.475,0,-153.769,-151.116,-159.507,-320.527,-162.236,-170.627,-321.731,-332.852	0/1:139:72,62,1,3:72:2555:62,1,3:2220,36,108:-159.305,0,-189.519,-178.2,-205.403,-386.071,-172.252,-199.455,-377.644,-379.521	1/1:42:0,39,0,2:0:0:39,0,2:1400,0,69:-125.931,-11.7402,0,-125.931,-11.7402,-125.931,-120.62,-6.44569,-120.62,-120.018	1/1:143:0,132,5,3:0:0:132,5,3:4731,180,108:-425.603,-39.736,0,-411.703,-25.8337,-410.198,-416.794,-30.9194,-402.893,-415.891	1/1:60:0,57,1,1:0:0:57,1,1:2024,36,36:-181.833,-17.1587,0,-179.053,-14.3838,-178.752,-178.924,-14.2477,-176.144,-178.623	0/1:54:19,27,2,3:19:672:27,2,3:972,72,108:-73.4184,0,-46.6183,-73.4354,-49.0432,-127.567,-70.3322,-45.9395,-119.364,-124.163	1/2:43:3,21,12,2:3:108:21,12,2:756,430,72:-84.8343,-24.3426,-26.8353,-52.578,0,-57.7782,-79.919,-27.3378,-55.5724,-88.1298	1/2:72:0,49,21,2:0:0:49,21,2:1733,756,72:-199.084,-58.3714,-43.6209,-140.703,0,-134.381,-193.266,-52.5519,-134.884,-192.664	1/2:96:2,54,27,7:2:72:54,27,7:1932,948,250:-222.602,-66.2647,-55.8849,-151.054,0,-148.801,-202.875,-51.8088,-136.6,-206.643	1/3:126:0,62,10,30:0:0:62,10,30:2199,334,1044:-263.157,-84.6359,-65.972,-237.573,-59.0531,-234.563,-178.531,0,-152.948,-169.5	1/2:137:0,98,13,4:0:0:98,13,4:3498,456,1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chr08	6494582	.	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chr08	6496233	.	C	T	245090	PASS	AB=0.645646;ABP=800.632;AC=152;AF=0.808511;AN=188;AO=12252;CIGAR=1X;DP=13797;DPB=13797;DPRA=0;EPP=26607.9;EPPR=3355.76;GTI=8;LEN=1;MEANALT=1.01064;MQM=38.221;MQMR=49.4566;NS=94;NUMALT=1;ODDS=4.60384;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=436736;QR=55267;RO=1544;RPL=12252;RPP=26607.9;RPPR=3355.76;RPR=0;RUN=1;SAF=0;SAP=26607.9;SAR=12252;SRF=0;SRP=3355.76;SRR=1544;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:75:0,75:0:0:75:2673:-227.827,-22.5773,0	1/1:102:0,102:0:0:102:3652:-308.218,-30.7051,0	0/1:230:66,164:66:2364:164:5869:-427.935,0,-141.883	1/1:600:0,600:0:0:600:21367:-1803.28,-180.618,0	0/1:58:8,50:8:288:50:1788:-134.1,0,-8.35762	0/1:30:3,27:3:108:27:972:-74.3446,0,-0.728554	1/1:345:0,345:0:0:345:12268:-1027.94,-103.855,0	1/1:294:0,294:0:0:294:10511:-890.024,-88.5028,0	1/1:150:0,150:0:0:150:5327:-453.764,-45.1545,0	1/1:116:0,116:0:0:116:4156:-349.425,-34.9195,0	1/1:91:1,90:1:36:90:3198:-268.074,-23.8072,0	1/1:185:0,185:0:0:185:6598:-559.004,-55.6906,0	1/1:117:0,117:0:0:117:4185:-355.011,-35.2205,0	1/1:81:0,81:0:0:81:2912:-248.522,-24.3834,0	1/1:104:0,104:0:0:104:3709:-310.844,-31.3071,0	1/1:84:0,84:0:0:84:3005:-257.091,-25.2865,0	1/1:59:0,59:0:0:59:2100:-177.908,-17.7608,0	1/1:42:0,42:0:0:42:1500:-126.709,-12.6433,0	1/1:61:0,61:0:0:61:2184:-184.188,-18.3628,0	1/1:443:0,443:0:0:443:15749:-1325.17,-133.356,0	1/1:381:0,381:0:0:381:13498:-1150.79,-114.692,0	0/1:157:59,98:59:2116:98:3474:-249.236,0,-140.237	1/1:214:0,214:0:0:214:7608:-639.344,-64.4204,0	0/1:85:19,66:19:684:66:2319:-172.819,0,-35.7399	1/1:184:0,184:0:0:184:6589:-561.589,-55.3895,0	0/1:336:115,221:115:4132:221:7805:-568.247,0,-266.942	0/1:353:109,244:109:3916:244:8712:-635.34,0,-243.856	1/1:54:0,54:0:0:54:1940:-165.087,-16.2556,0	1/1:442:0,442:0:0:442:15814:-1355.05,-133.055,0	1/1:122:4,118:4:144:118:4206:-345.761,-23.4739,0	0/1:185:76,109:76:2728:109:3889:-270.139,0,-186.318	0/1:6:3,3:3:108:3:108:-7.7799,0,-8.23597	1/1:18:0,18:0:0:18:639:-54.8772,-5.41854,0	0/1:5:3,2:3:108:2:72:-4.99969,0,-8.5154	1/1:15:0,15:0:0:15:536:-45.5755,-4.51545,0	1/1:31:0,31:0:0:31:1112:-95.6155,-9.33193,0	1/1:325:0,325:0:0:325:11624:-993.255,-97.8348,0	0/1:164:48,116:48:1724:116:4141:-304.722,0,-105.439	0/1:81:36,45:36:1284:45:1616:-113.917,0,-90.6994	1/1:1:0,1:0:0:1:36:-3.4236,-0.30103,0	0/1:150:53,97:53:1885:97:3465:-246.338,0,-122.5	0/1:56:20,36:20:720:36:1296:-93.7891,0,-47.5782	0/1:204:31,173:31:1101:173:6159:-462.918,0,-37.6341	0/1:86:33,53:33:1188:53:1877:-131.341,0,-80.7716	1/1:96:0,96:0:0:96:3420:-287.492,-28.8989,0	0/1:134:43,91:43:1536:91:3230:-236.93,0,-97.4735	0/1:143:24,119:24:864:119:4272:-322.929,0,-34.2487	0/1:195:55,139:55:1938:139:4922:-358.305,0,-115.044	1/1:192:0,192:0:0:192:6873:-579.326,-57.7978,0	1/1:190:0,190:0:0:190:6760:-571.523,-57.1957,0	1/1:233:0,233:0:0:233:8326:-713.746,-70.14,0	0/1:7:3,4:3:108:4:144:-10.4269,0,-7.93494	0/1:148:39,109:39:1400:109:3900:-285.63,0,-80.721	0/1:106:39,67:39:1389:67:2370:-172.183,0,-91.8229	0/1:4:3,1:3:108:1:36:-2.21948,0,-8.81643	0/1:233:79,154:79:2836:154:5479:-398.36,0,-184.29	0/1:52:10,42:10:356:42:1492:-110.512,0,-16.6268	1/1:13:0,13:0:0:13:466:-38.7767,-3.91339,0	0/1:19:8,11:8:284:11:396:-28.0507,0,-19.8409	1/1:149:0,149:0:0:149:5352:-453.921,-44.8535,0	1/1:128:0,128:0:0:128:4581:-385.132,-38.5318,0	1/1:6:0,6:0:0:6:216:-18.6318,-1.80618,0	0/1:298:154,144:154:5478:144:5148:-351.68,0,-399.159	1/1:244:0,244:0:0:244:8693:-730.622,-73.4513,0	1/1:90:0,90:0:0:90:3177:-271.413,-27.0927,0	1/1:219:0,219:0:0:219:7788:-656.349,-65.9256,0	1/1:334:2,332:2:72:332:11781:-982.757,-93.7297,0	0/1:150:88,62:88:3160:62:2220:-143.228,0,-237.278	1/1:58:0,58:0:0:58:2088:-176.841,-17.4597,0	1/1:146:0,146:0:0:146:5187:-441.863,-43.9504,0	1/1:81:0,81:0:0:81:2859:-246.19,-24.3834,0	1/1:18:0,18:0:0:18:640:-54.6823,-5.41854,0	1/1:260:0,260:0:0:260:9213:-782.415,-78.2678,0	0/1:109:59,50:59:2124:50:1758:-114.362,0,-155.995	1/1:221:0,221:0:0:221:7883:-671.681,-66.5276,0	1/1:251:0,251:0:0:251:8912:-750.247,-75.5585,0	1/1:144:0,144:0:0:144:5126:-438.655,-43.3483,0	1/1:173:2,171:2:72:171:6121:-515.234,-45.2785,0	0/1:9:3,6:3:108:6:201:-14.901,0,-7.31128	1/1:202:1,201:1:36:201:7169:-605.141,-57.2216,0	0/1:62:14,48:14:489:48:1694:-126.814,0,-23.6773	1/1:324:0,324:0:0:324:11582:-976.039,-97.5337,0	1/1:80:0,80:0:0:80:2876:-241.772,-24.0824,0	1/1:111:0,111:0:0:111:3984:-333.783,-33.4143,0	0/1:70:30,40:30:1076:40:1425:-100.003,0,-75.299	1/1:222:1,221:1:36:221:7909:-663.894,-63.2422,0	1/1:31:0,31:0:0:31:1108:-93.0876,-9.33193,0	0/1:111:40,71:40:1436:71:2533:-181.125,0,-92.6396	1/1:132:0,132:0:0:132:4723:-400.751,-39.736,0	0/1:48:21,27:21:743:27:972:-67.6822,0,-52.3777	0/1:109:46,63:46:1644:63:2252:-158.73,0,-114.049	0/1:136:93,43:93:3340:43:1544:-89.0687,0,-258.68	1/1:215:0,215:0:0:215:7632:-644.303,-64.7215,0	1/1:169:0,169:0:0:169:6045:-506.836,-50.8741,0
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chr08	6508904	.	T	G	19012.5	PASS	AB=0.538049;ABP=28.7883;AC=37;AF=0.198925;AN=186;AO=1113;CIGAR=1X;DP=5788;DPB=5788;DPRA=0.961553;EPP=2419.86;EPPR=10139.4;GTI=2;LEN=1;MEANALT=1.025;MQM=59.9856;MQMR=59.9799;NS=93;NUMALT=1;ODDS=1.9443;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39787;QR=166678;RO=4668;RPL=1113;RPP=2419.86;RPPR=10139.4;RPR=0;RUN=1;SAF=0;SAP=2419.86;SAR=1113;SRF=0;SRP=10139.4;SRR=4668;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/1:115:59,56:59:2108:56:2004:-146.015,0,-155.371	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:35:17,18:17:597:18:644:-47.7545,0,-43.5201	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:60:60,0:60:2129:0:0:0,-18.0618,-191.877	0/0:75:74,0:74:2630:0:0:0,-22.2762,-236.585	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.11	0/0:91:91,0:91:3257:0:0:0,-27.3937,-293.349	0/0:141:140,0:140:5032:0:0:0,-42.1442,-452.663	0/0:124:124,0:124:4404:0:0:0,-37.3277,-396.528	0/0:128:127,0:127:4549:0:0:0,-38.2308,-409.214	0/0:108:107,0:107:3844:0:0:0,-32.2102,-345.795	0/0:113:113,0:113:4053:0:0:0,-34.0164,-364.955	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:54:54,0:54:1929:0:0:0,-16.2556,-173.885	0/0:55:55,0:55:1945:0:0:0,-16.5566,-175.324	0/0:72:72,0:72:2561:0:0:0,-21.6742,-230.739	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.249	0/1:42:14,28:14:485:28:992:-76.9511,0,-31.3337	0/0:39:38,1:38:1345:1:36:0,-8.14189,-117.75	0/1:35:25,10:25:900:10:360:-22.2083,0,-70.785	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:75:35,40:35:1252:40:1432:-106.6,0,-90.4078	0/1:200:83,117:83:2935:117:4184:-316.536,0,-204.175	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/0:70:69,0:69:2461:0:0:0,-20.7711,-221.383	0/0:36:35,0:35:1241:0:0:0,-10.536,-111.633	0/1:44:22,22:22:777:22:788:-57.9995,0,-57.005	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:5:0,5:0:0:5:180:-16.5517,-1.50515,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:229:228,1:228:8161:1:36:0,-65.3376,-730.415	0/1:36:19,17:19:654:17:601:-43.5813,0,-48.3405	0/1:71:32,39:32:1137:39:1383:-103.395,0,-81.2629	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:39:18,21:18:648:21:752:-56.2661,0,-46.9117	0/1:47:16,31:16:576:31:1112:-86.2429,0,-38.0266	0/1:83:29,54:29:1029:54:1936:-149.531,0,-67.9357	0/1:83:48,35:48:1728:35:1256:-88.3598,0,-130.82	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:39:20,19:20:712:19:680:-49.789,0,-52.6665	0/1:65:35,29:35:1252:29:1036:-73.9283,0,-93.3594	0/1:29:13,16:13:464:16:572:-43.0836,0,-33.3676	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:64:32,32:32:1137:32:1148:-84.3639,0,-83.371	0/1:20:9,11:9:320:11:396:-29.9621,0,-23.1218	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:65:30,35:30:1061:35:1252:-93.3732,0,-76.2324	0/1:31:16,15:16:557:15:540:-39.6046,0,-41.1236	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:100:100,0:100:3581:0:0:0,-30.103,-322.495	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:46:20,26:20:720:26:928:-69.9909,0,-51.2814	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.518	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:54:54,0:54:1906:0:0:0,-16.2556,-171.814	0/1:68:24,44:24:841:44:1572:-121.302,0,-55.5363	0/0:67:66,1:66:2372:1:36:0,-16.5707,-210.139	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:60:60,0:60:2145:0:0:0,-18.0618,-193.316	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:44:42,2:42:1508:2:72:0,-6.4086,-129.178	0/1:48:25,23:25:896:23:820:-59.6731,0,-66.5109	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:59:59,0:59:2060:0:0:0,-17.7608,-184.727	0/1:20:18,2:18:644:2:72:-0.816123,0,-52.27	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/1:82:40,42:40:1406:42:1497:-110.338,0,-102.149	0/0:88:88,0:88:3136:0:0:0,-26.4906,-282.467	0/0:75:75,0:75:2666:0:0:0,-22.5772,-240.183	0/0:101:101,0:101:3602:0:0:0,-30.404,-324.384	0/1:76:39,37:39:1385:37:1305:-94.8711,0,-102.069	0/0:165:165,0:165:5913:0:0:0,-49.6699,-532.276	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:102:44,58:44:1580:58:2067:-155.595,0,-111.786	0/0:128:128,0:128:4596:0:0:0,-38.5318,-413.803	0/1:95:38,57:38:1334:57:2048:-155.994,0,-91.758	0/1:152:72,80:72:2580:80:2852:-211.162,0,-186.688	0/1:95:31,64:31:1082:64:2298:-178.483,0,-69.0868	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.882	0/0:192:192,0:192:6832:0:0:0,-57.7978,-614.948
chr08	6546799	.	T	A	136966	PASS	AB=0.408853;ABP=265.455;AC=152;AF=0.817204;AN=186;AO=6423;CIGAR=1X;DP=8582;DPB=8582;DPRA=0;EPP=13950.4;EPPR=4663.03;GTI=5;LEN=1;MEANALT=1.01075;MQM=59.6617;MQMR=59.9949;NS=93;NUMALT=1;ODDS=0.357448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229795;QR=77213;RO=2158;RPL=0;RPP=13950.4;RPPR=4663.03;RPR=6423;RUN=1;SAF=6423;SAP=13950.4;SAR=0;SRF=2158;SRP=4689.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1108:-100.023,-9.33193,0	1/1:126:0,126:0:0:126:4517:-406.436,-37.9298,0	0/1:210:142,68:142:5080:68:2444:-156.99,0,-394.128	1/1:151:0,151:0:0:151:5424:-488.276,-45.4555,0	0/1:102:52,50:52:1872:50:1793:-130.943,0,-138.054	0/1:52:20,32:20:720:32:1144:-87.6044,0,-49.4752	1/1:93:0,93:0:0:93:3332:-300.08,-27.9958,0	1/1:149:0,149:0:0:149:5313:-478.205,-44.8535,0	1/1:134:0,134:0:0:134:4772:-429.471,-40.338,0	1/1:100:0,100:0:0:100:3573:-321.758,-30.103,0	1/1:48:0,48:0:0:48:1720:-155.078,-14.4494,0	1/1:59:0,59:0:0:59:2112:-190.331,-17.7608,0	1/1:63:0,63:0:0:63:2260:-203.628,-18.9649,0	1/1:42:0,42:0:0:42:1493:-134.489,-12.6433,0	1/1:68:0,68:0:0:68:2421:-218.135,-20.47,0	1/1:38:0,38:0:0:38:1363:-122.965,-11.4391,0	1/1:63:0,63:0:0:63:2248:-202.508,-18.9649,0	1/1:62:0,62:0:0:62:2224:-200.416,-18.6639,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:163:1,162:1:36:162:5779:-516.556,-45.4696,0	1/1:128:0,128:0:0:128:4573:-411.569,-38.5318,0	0/1:152:129,23:129:4620:23:824:-28.7268,0,-370.207	1/1:105:0,105:0:0:105:3772:-339.653,-31.6082,0	0/1:148:71,77:71:2544:77:2772:-204.975,0,-184.658	1/1:52:0,52:0:0:52:1860:-167.678,-15.6536,0	0/1:286:164,122:164:5877:122:4365:-306.909,0,-442.943	0/1:239:119,120:119:4245:120:4307:-315.825,0,-310.283	1/1:27:0,27:0:0:27:964:-87.0722,-8.12781,0	1/1:184:0,184:0:0:184:6616:-595.441,-55.3895,0	1/1:95:1,94:1:36:94:3350:-298.053,-24.9996,0	0/1:111:56,55:56:2000:55:1980:-144.928,0,-146.859	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:16:0,16:0:0:16:564:-51.0857,-4.81648,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:206:0,206:0:0:206:7373:-663.579,-62.0122,0	0/1:175:117,58:117:4203:58:2057:-132.576,0,-325.769	0/1:64:35,29:35:1241:29:1028:-73.4708,0,-92.7266	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:92:51,41:51:1828:41:1468:-104.717,0,-137.106	0/1:40:27,13:27:972:13:468:-30.4102,0,-75.7567	0/1:165:106,59:106:3756:59:2124:-141.754,0,-288.568	0/1:95:59,36:59:2120:36:1288:-87.5692,0,-162.471	1/1:72:0,72:0:0:72:2588:-233.161,-21.6742,0	0/1:71:45,26:45:1605:26:936:-63.1283,0,-123.365	0/1:121:70,51:70:2512:51:1823:-127.848,0,-189.907	0/1:212:132,80:132:4721:80:2861:-193.837,0,-361.229	1/1:114:0,114:0:0:114:4092:-368.458,-34.3174,0	1/1:99:0,98:0:0:98:3496:-314.491,-29.5009,0	1/1:166:0,166:0:0:166:5918:-532.649,-49.971,0	0/1:9:5,4:5:180:4:140:-10.2343,0,-13.8428	0/1:267:157,110:157:5602:110:3944:-274.412,0,-423.926	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:127:66,61:66:2352:61:2165:-156.813,0,-173.709	0/1:53:21,32:21:752:32:1144:-87.3149,0,-52.0517	1/1:12:0,12:0:0:12:428:-38.8579,-3.61236,0	0/1:24:16,8:16:572:8:284:-18.6786,0,-44.5887	1/1:43:0,43:0:0:43:1544:-139.231,-12.9443,0	1/1:106:0,106:0:0:106:3792:-341.476,-31.9092,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:193:121,72:121:4314:72:2580:-173.418,0,-330.336	1/1:237:2,235:2:72:235:8390:-748.243,-64.5074,0	1/1:58:0,58:0:0:58:2069:-186.451,-17.4597,0	1/1:71:0,71:0:0:71:2516:-226.63,-21.3731,0	1/1:129:3,126:3:108:126:4520:-396.732,-28.7577,0	0/1:112:89,23:89:3188:23:828:-41.1288,0,-253.411	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:81:0,81:0:0:81:2890:-260.287,-24.3834,0	1/1:59:0,59:0:0:59:2112:-190.344,-17.7608,0	1/1:16:0,16:0:0:16:557:-50.4556,-4.81648,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:77:34,43:34:1220:43:1544:-116.057,0,-86.9275	1/1:81:0,81:0:0:81:2900:-261.227,-24.3834,0	1/1:169:1,168:1:36:168:5974:-534.144,-47.2758,0	1/1:134:0,134:0:0:134:4801:-432.191,-40.338,0	1/1:91:0,91:0:0:91:3244:-292.128,-27.3937,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:100:0,100:0:0:100:3580:-322.398,-30.103,0	0/1:92:46,46:46:1641:46:1652:-121.244,0,-120.282	1/1:210:0,210:0:0:210:7524:-677.173,-63.2163,0	1/1:82:0,82:0:0:82:2940:-264.171,-24.6845,0	1/1:42:0,42:0:0:42:1508:-136.012,-12.6433,0	0/1:67:30,37:30:1076:37:1328:-99.6485,0,-76.9838	1/1:149:0,149:0:0:149:5344:-481.074,-44.8535,0	1/1:44:0,44:0:0:44:1553:-140.035,-13.2453,0	0/1:85:42,43:42:1508:43:1529:-112.314,0,-110.427	1/1:79:0,79:0:0:79:2840:-255.821,-23.7814,0	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5241	0/1:58:30,28:30:1080:28:1004:-73.2033,0,-80.0535	0/1:77:63,14:63:2264:14:500:-22.1569,0,-180.843	1/1:120:0,120:0:0:120:4284:-385.654,-36.1236,0	1/1:90:0,90:0:0:90:3236:-291.447,-27.0927,0
chr08	6546867	.	CAGC	TAGT,CAGT	222957	PASS	AB=0.47401,0.521698;ABP=27.6162,20.1605;AC=152,36;AF=0.808511,0.191489;AN=188;AO=8220,2203;CIGAR=1X2M1X,3M1X;DP=10455;DPB=10455.2;DPRA=0,1.18091;EPP=17852.5,4786.76;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.76596,2.40909;MQM=58.3027,59.9396;MQMR=60;NS=94;NUMALT=2;ODDS=0.441892;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=289518,78074;QR=27;RO=1;RPL=8220,2203;RPP=17852.5,4786.76;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=17852.5,4786.76;SAR=8220,2203;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,33,0:0:0:33,0:1162,0:-104.417,-9.93399,0,-104.417,-9.93399,-104.417	1/1:209:0,209,0:0:0:209,0:7304,0:-656.141,-62.9153,0,-656.141,-62.9153,-656.141	1/2:166:0,72,92:0:0:72,92:2511,3275:-471.047,-266.949,-245.275,-204.131,0,-176.437	1/1:309:0,309,0:0:0:309,0:10917,0:-981.848,-93.0183,0,-981.848,-93.0183,-981.848	1/2:108:0,60,48:0:0:60,48:2125,1690:-310.99,-137.933,-119.871,-173.41,0,-158.96	1/2:70:0,37,33:0:0:37,33:1298,1180:-202.081,-96.5741,-85.4359,-105.861,0,-95.9274	1/1:156:0,156,0:0:0:156,0:5506,0:-495.392,-46.9607,0,-495.392,-46.9607,-495.392	1/1:223:0,222,0:0:0:222,0:7803,0:-700.224,-66.8287,0,-700.224,-66.8287,-700.224	1/1:44:0,44,0:0:0:44,0:1536,0:-138.447,-13.2453,0,-138.447,-13.2453,-138.447	1/1:100:0,100,0:0:0:100,0:3534,0:-317.631,-30.103,0,-317.631,-30.103,-317.631	1/1:74:0,74,0:0:0:74,0:2615,0:-235.327,-22.2762,0,-235.327,-22.2762,-235.327	1/1:54:0,53,0:0:0:53,0:1885,0:-169.416,-15.9546,0,-169.416,-15.9546,-169.416	1/1:67:0,67,0:0:0:67,0:2359,0:-212.315,-20.169,0,-212.315,-20.169,-212.315	1/1:85:0,84,1:0:0:84,1:2931,36:-263.396,-25.2865,0,-260.459,-21.9893,-260.158	1/1:53:0,53,0:0:0:53,0:1866,0:-168.131,-15.9546,0,-168.131,-15.9546,-168.131	1/1:46:0,46,0:0:0:46,0:1628,0:-146.677,-13.8474,0,-146.677,-13.8474,-146.677	1/1:95:0,94,1:0:0:94,1:3298,36:-296.465,-28.2968,0,-293.528,-24.9996,-293.227	1/1:57:0,57,0:0:0:57,0:1990,0:-179.141,-17.1587,0,-179.141,-17.1587,-179.141	1/1:38:0,38,0:0:0:38,0:1333,0:-120.124,-11.4391,0,-120.124,-11.4391,-120.124	1/1:310:0,307,2:0:0:307,2:10858,72:-976.228,-92.4162,0,-970.353,-86.4941,-969.751	1/1:128:0,128,0:0:0:128,0:4458,0:-401.148,-38.5318,0,-401.148,-38.5318,-401.148	1/2:97:0,35,62:0:0:35,62:1228,2205:-279.423,-180.05,-169.514,-99.7245,0,-81.0606	1/1:36:0,34,1:0:0:34,1:1210,32:-108.852,-10.235,0,-106.274,-7.62352,-105.973	1/2:116:0,49,67:0:0:49,67:1717,2384:-334.261,-194.632,-179.881,-139.981,0,-119.812	1/1:41:0,41,0:0:0:41,0:1422,0:-128.173,-12.3422,0,-128.173,-12.3422,-128.173	1/2:394:0,202,190:0:0:202,190:7112,6709:-1125.18,-546.465,-485.657,-578.844,0,-521.648	1/2:219:0,111,106:0:0:111,106:3936,3812:-631.643,-311.095,-277.681,-320.632,0,-288.723	1/1:33:0,33,0:0:0:33,0:1164,0:-104.915,-9.93399,0,-104.915,-9.93399,-104.915	1/1:356:0,355,0:0:0:355,0:12540,0:-1126.94,-106.866,0,-1126.94,-106.866,-1126.94	1/1:217:0,211,4:0:0:211,4:7458,140:-670.868,-63.5173,0,-659.477,-52.1278,-658.273	1/2:146:0,89,56:0:0:89,56:3116,1942:-411.036,-157.82,-131.029,-253.262,0,-236.405	1/2:9:0,3,6:0:0:3,6:108,201:-25.3861,-16.6109,-15.7078,-9.12564,0,-7.31946	1/1:16:0,16,0:0:0:16,0:560,0:-50.6022,-4.81648,0,-50.6022,-4.81648,-50.6022	1/2:7:0,1,6:0:0:1,6:36,216:-20.9208,-17.9843,-17.6833,-3.29624,0,-1.49006	1/1:11:0,11,0:0:0:11,0:392,0:-35.6111,-3.31133,0,-35.6111,-3.31133,-35.6111	1/1:20:0,20,0:0:0:20,0:700,0:-63.2602,-6.0206,0,-63.2602,-6.0206,-63.2602	1/1:148:0,148,0:0:0:148,0:5223,0:-469.704,-44.5524,0,-469.704,-44.5524,-469.704	1/2:227:0,125,100:0:0:125,100:4395,3568:-648.508,-290.93,-253.301,-357.636,0,-327.533	1/2:70:0,30,40:0:0:30,40:1056,1421:-201.982,-116.144,-107.113,-86.1911,0,-74.1499	1/1:9:0,9,0:0:0:9,0:313,0:-28.5061,-2.70927,0,-28.5061,-2.70927,-28.5061	1/2:166:0,87,79:0:0:87,79:3073,2798:-478.387,-228.277,-202.087,-250.464,0,-226.682	1/2:31:0,12,18:0:0:12,18:427,629:-85.9563,-51.156,-47.5436,-34.7943,0,-29.3757	1/2:152:0,60,92:0:0:60,92:2105,3247:-435.759,-264.754,-246.693,-171.356,0,-143.661	1/2:58:0,32,26:0:0:32,26:1129,902:-165.579,-73.6636,-64.0306,-92.2649,0,-84.4381	1/1:66:0,66,0:0:0:66,0:2339,0:-210.423,-19.868,0,-210.423,-19.868,-210.423	1/2:82:0,26,56:0:0:26,56:900,1974:-234.103,-161.074,-153.247,-73.3772,0,-56.5196	1/2:193:0,112,80:0:0:112,80:3920,2821:-548.129,-229.745,-196.029,-318.437,0,-294.355	1/2:249:0,126,123:0:0:126,123:4417,4377:-715.823,-357.068,-319.138,-359.108,0,-322.082	1/1:93:0,93,0:0:0:93,0:3261,0:-293.15,-27.9958,0,-293.15,-27.9958,-293.15	1/1:182:0,182,0:0:0:182,0:6412,0:-576.824,-54.7875,0,-576.824,-54.7875,-576.824	1/1:136:0,135,0:0:0:135,0:4796,0:-430.403,-40.6391,0,-430.403,-40.6391,-430.403	1/2:14:0,9,5:0:0:9,5:324,180:-41.48,-15.0469,-12.3376,-26.7929,0,-25.2878	1/2:227:0,115,111:0:0:115,111:4086,3901:-650.143,-317.501,-282.883,-332.635,0,-299.221	1/2:51:0,31,20:0:0:31,20:1090,716:-147.466,-58.7471,-49.4152,-89.0741,0,-83.0535	1/2:17:0,8,9:0:0:8,9:280,319:-49.0963,-26.3421,-23.9339,-23.106,0,-20.3967	1/2:240:0,114,125:0:0:114,125:4003,4454:-688.547,-363.119,-328.802,-325.5,0,-287.871	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chr08	6546879	.	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chr08	6552761	.	T	A	175256	PASS	AB=0.460341;ABP=58.2983;AC=153;AF=0.81383;AN=188;AO=8125;CIGAR=1X;DP=10323;DPB=10323;DPRA=0;EPP=17646.2;EPPR=4758.53;GTI=2;LEN=1;MEANALT=1.06383;MQM=59.9708;MQMR=59.9589;NS=94;NUMALT=1;ODDS=0.63173;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=290609;QR=78493;RO=2190;RPL=0;RPP=17646.2;RPPR=4758.53;RPR=8125;RUN=1;SAF=8125;SAP=17646.2;SAR=0;SRF=2190;SRP=4758.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:159:0,159:0:0:159:5700:-513.109,-47.8638,0	0/1:153:86,67:86:3092:67:2412:-171.278,0,-232.449	1/1:223:2,220:2:72:220:7892:-703.422,-60.3518,0	0/1:109:41,68:41:1472:68:2429:-186.052,0,-99.9639	0/1:124:49,75:49:1752:75:2700:-205.916,0,-120.636	1/1:204:0,204:0:0:204:7301:-656.12,-61.4101,0	1/1:172:0,172:0:0:172:6147:-553.315,-51.7772,0	1/1:135:0,135:0:0:135:4816:-433.594,-40.6391,0	1/1:109:0,109:0:0:109:3893:-350.563,-32.8123,0	1/1:47:0,47:0:0:47:1665:-150.135,-14.1484,0	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0	1/1:75:0,75:0:0:75:2675:-240.992,-22.5773,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	1/1:58:0,58:0:0:58:2069:-186.48,-17.4597,0	1/1:65:0,65:0:0:65:2320:-209.061,-19.567,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:237:0,237:0:0:237:8475:-761.974,-71.3441,0	1/1:179:0,179:0:0:179:6393:-575.459,-53.8844,0	0/1:101:73,28:73:2624:28:997:-59.6361,0,-206.003	1/1:75:1,74:1:36:74:2622:-232.627,-18.979,0	0/1:103:48,55:48:1708:55:1968:-146.389,0,-123	1/1:99:0,99:0:0:99:3544:-319.169,-29.802,0	0/1:378:192,186:192:6896:186:6613:-480.903,0,-506.892	0/1:240:108,132:108:3880:132:4728:-353.431,0,-277.146	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:329:1,328:1:36:328:11719:-1050.97,-95.4406,0	1/1:110:3,107:3:108:107:3825:-334.366,-23.0381,0	0/1:145:89,56:89:3188:56:2008:-137.344,0,-243.494	0/1:24:16,8:16:568:8:288:-19.0427,0,-44.2271	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:205:0,205:0:0:205:7330:-659.748,-61.7112,0	0/1:174:107,67:107:3824:67:2404:-164.237,0,-291.978	0/1:78:52,26:52:1864:26:932:-60.7185,0,-144.557	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:171:87,84:87:3112:84:3012:-219.465,0,-228.752	0/1:40:15,25:15:536:25:900:-69.2798,0,-36.5336	0/1:155:97,58:97:3456:58:2061:-139.1,0,-264.537	0/1:70:33,37:33:1184:37:1324:-98.39,0,-85.7962	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:85:46,39:46:1652:39:1400:-100.712,0,-123.379	0/1:170:103,67:103:3692:67:2400:-165.082,0,-281.307	0/1:179:77,102:77:2768:102:3633:-273.29,0,-195.431	1/1:129:0,129:0:0:129:4601:-414.255,-38.8329,0	1/1:180:0,180:0:0:180:6447:-580.315,-54.1854,0	1/1:112:0,112:0:0:112:4020:-361.987,-33.7154,0	0/1:18:14,4:14:504:4:129:-6.50912,0,-40.2796	0/1:213:112,101:112:4024:101:3612:-261.167,0,-298.228	0/1:62:28,34:28:1008:34:1220:-91.4429,0,-72.3725	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/1:182:109,73:109:3892:73:2605:-179.909,0,-295.688	0/1:91:37,54:37:1324:54:1921:-145.771,0,-92.0684	1/1:11:0,11:0:0:11:373:-33.8952,-3.31133,0	0/1:33:17,14:17:612:14:504:-36.0063,0,-45.7217	1/1:96:0,96:0:0:96:3448:-310.532,-28.8989,0	1/1:107:1,106:1:36:106:3797:-338.328,-28.6119,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:202:113,87:113:4052:87:3120:-220.46,0,-304.301	1/1:254:0,254:0:0:254:9085:-817.625,-76.4616,0	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	1/1:99:0,99:0:0:99:3551:-319.798,-29.802,0	1/1:175:0,175:0:0:175:6253:-562.864,-52.6803,0	0/1:142:97,44:97:3484:44:1572:-98.9666,0,-270.965	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:89:0,88:0:0:88:3142:-282.647,-26.4906,0	1/1:80:0,80:0:0:80:2867:-258.266,-24.0824,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:163:0,163:0:0:163:5848:-526.43,-49.0679,0	0/1:67:35,32:35:1256:32:1148:-83.4608,0,-93.1763	1/1:203:0,203:0:0:203:7260:-653.434,-61.1091,0	1/1:215:0,215:0:0:215:7712:-694.111,-64.7215,0	1/1:130:0,130:0:0:130:4634:-417.224,-39.1339,0	1/1:107:2,105:2:72:105:3756:-331.403,-25.3735,0	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	1/1:128:0,128:0:0:128:4589:-413.172,-38.5318,0	0/1:120:67,53:67:2408:53:1904:-135.514,0,-180.853	1/1:250:0,250:0:0:250:8888:-799.906,-75.2575,0	1/1:118:0,117:0:0:117:4174:-375.481,-35.2205,0	1/1:58:0,58:0:0:58:2063:-185.941,-17.4597,0	0/1:105:54,51:54:1929:51:1836:-133.912,0,-142.277	1/1:139:0,139:0:0:139:4984:-448.707,-41.8432,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:83:44,39:44:1576:39:1396:-100.925,0,-117.146	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	0/1:32:18,14:18:648:14:500:-35.7032,0,-49.0189	0/1:86:52,34:52:1860:34:1220:-84.2182,0,-141.791	0/1:80:48,32:48:1712:32:1144:-79.1871,0,-130.283	1/1:80:1,79:1:36:79:2821:-250.529,-20.4841,0	1/1:126:0,126:0:0:126:4498:-404.987,-37.9298,0
chr08	6552811	.	G	A	101453	PASS	AB=0.529866;ABP=67.2151;AC=35;AF=0.18617;AN=188;AO=4410;CIGAR=1X;DP=21679;DPB=21679;DPRA=1.17157;EPP=9579.2;EPPR=37482.6;GTI=1;LEN=1;MEANALT=1.13333;MQM=59.971;MQMR=59.9775;NS=94;NUMALT=1;ODDS=1.83158;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156474;QR=611552;RO=17260;RPL=2188;RPP=3.57951;RPPR=181.769;RPR=2222;RUN=1;SAF=2188;SAP=3.57951;SAR=2222;SRF=8034;SRP=181.769;SRR=9226;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:91:91,0:91:3206:0:0:0,-27.3937,-288.763	0/0:335:335,0:335:11937:0:0:0,-100.845,-1074.19	0/1:336:158,178:158:5626:178:6326:-468.288,0,-405.318	0/0:493:488,3:488:17324:3:108:0,-138.09,-1548.25	0/1:233:130,103:130:4585:103:3656:-259.104,0,-342.678	0/1:196:116,80:116:4140:80:2841:-196.922,0,-313.783	0/0:346:346,0:346:12233:0:0:0,-104.156,-1100.12	0/0:305:305,0:305:10807:0:0:0,-91.8141,-972.537	0/0:238:238,0:238:8432:0:0:0,-71.6451,-758.891	0/0:277:277,0:277:9784:0:0:0,-83.3853,-880.518	0/0:170:170,0:170:5957:0:0:0,-51.1751,-536.244	0/0:190:190,0:190:6660:0:0:0,-57.1957,-599.489	0/0:163:163,0:163:5756:0:0:0,-49.0679,-518.161	0/0:163:163,0:163:5764:0:0:0,-49.0679,-518.882	0/0:137:137,0:137:4833:0:0:0,-41.2411,-435.128	0/0:137:137,0:137:4840:0:0:0,-41.2411,-435.759	0/0:186:186,0:186:6572:0:0:0,-55.9916,-591.57	0/0:131:131,0:131:4595:0:0:0,-39.4349,-413.719	0/0:118:118,0:118:4113:0:0:0,-35.5215,-370.362	0/0:398:396,2:396:13987:2:72:0,-112.973,-1251.78	0/0:369:369,0:369:13115:0:0:0,-111.08,-1180.16	0/1:147:40,107:40:1424:107:3821:-299.835,0,-84.1612	0/0:172:170,1:170:6100:1:36:0,-48.2377,-545.501	0/1:220:124,96:124:4387:96:3417:-241.517,0,-328.779	0/0:167:167,0:167:5923:0:0:0,-50.272,-533.18	0/1:783:376,407:376:13377:407:14437:-1063.33,0,-966.239	0/1:483:263,220:263:9275:220:7835:-559.786,0,-689.325	0/0:91:91,0:91:3216:0:0:0,-27.3937,-289.663	0/0:747:747,0:747:26495:0:0:0,-224.869,-2383.82	0/0:310:306,4:306:10854:4:139:0,-80.4671,-963.911	0/1:328:126,202:126:4488:202:7155:-545.274,0,-305.351	0/1:28:8,19:8:284:19:676:-52.6806,0,-17.4163	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/0:412:412,0:412:14560:0:0:0,-124.024,-1310.17	0/1:382:167,215:167:5937:215:7674:-575.703,0,-419.448	0/1:177:88,89:88:3092:89:3139:-229.451,0,-225.227	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:427:182,244:182:6479:244:8648:-649.659,0,-454.601	0/1:86:46,40:46:1627:40:1397:-100.128,0,-120.83	0/1:253:100,153:100:3555:153:5399:-409.868,0,-243.999	0/1:173:89,84:89:3170:84:2951:-213.745,0,-233.446	0/0:109:109,0:109:3831:0:0:0,-32.8123,-344.988	0/1:239:113,126:113:4019:126:4480:-331.422,0,-289.952	0/1:305:146,159:146:5180:159:5682:-419.685,0,-374.529	0/1:371:189,182:189:6711:182:6445:-468.454,0,-492.388	0/0:276:276,0:276:9754:0:0:0,-83.0843,-876.715	0/0:354:354,0:354:12591:0:0:0,-106.565,-1133.03	0/0:313:313,0:313:11082:0:0:0,-94.2224,-997.284	0/1:41:17,24:17:608:24:855:-64.9279,0,-42.7098	0/1:414:199,215:199:7062:215:7648:-563.731,0,-511.019	0/1:107:55,52:55:1956:52:1847:-134.299,0,-144.105	0/1:24:14,10:14:492:10:352:-24.7935,0,-37.3876	0/1:333:140,193:140:4950:193:6849:-516.241,0,-345.407	0/1:199:102,97:102:3598:97:3455:-251.257,0,-264.122	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/1:71:25,46:25:896:46:1648:-127.235,0,-59.5872	0/0:244:244,0:244:8614:0:0:0,-73.4513,-775.263	0/0:271:270,1:270:9564:1:36:0,-77.9809,-857.127	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:370:172,196:172:6076:196:6993:-518.356,0,-435.865	0/0:518:518,0:518:18422:0:0:0,-155.934,-1657.57	0/0:153:153,0:153:5433:0:0:0,-46.0576,-489.1	0/0:200:200,0:200:7132:0:0:0,-60.206,-641.939	0/0:373:373,0:373:13201:0:0:0,-112.284,-1187.91	0/1:243:74,169:74:2644:169:5979:-465.07,0,-165.057	0/0:89:89,0:89:3168:0:0:0,-26.7917,-285.346	0/0:210:210,0:210:7453:0:0:0,-63.2163,-670.818	0/0:195:195,0:195:6887:0:0:0,-58.7008,-619.875	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/0:301:301,0:301:10644:0:0:0,-90.61,-957.88	0/1:161:83,78:83:2936:78:2770:-201.076,0,-216.008	0/0:500:500,0:500:17703:0:0:0,-150.515,-1592.89	0/0:413:412,1:412:14675:1:36:0,-120.727,-1316.9	0/0:340:339,1:339:11979:1:36:0,-98.7519,-1074.38	0/0:182:180,2:180:6411:2:60:0,-49.0892,-571.381	0/1:42:26,16:26:924:16:576:-39.5317,0,-70.8344	0/0:244:244,0:244:8657:0:0:0,-73.4513,-779.13	0/1:258:122,136:122:4353:136:4814:-355.751,0,-314.27	0/0:483:482,0:482:17076:0:0:0,-145.096,-1536.13	0/0:223:223,0:223:7933:0:0:0,-67.1297,-713.999	0/0:146:146,0:146:5160:0:0:0,-43.9504,-464.546	0/1:194:95,99:95:3347:99:3495:-256.362,0,-243.051	0/0:294:294,0:294:10374:0:0:0,-88.5028,-933.596	0/0:93:93,0:93:3311:0:0:0,-27.9958,-298.209	0/1:145:63,82:63:2235:82:2864:-214.345,0,-157.761	0/0:155:155,0:155:5495:0:0:0,-46.6596,-494.68	0/1:114:72,42:72:2553:42:1474:-98.6356,0,-195.702	0/1:247:114,133:114:3983:133:4694:-348.269,0,-284.309	0/1:157:58,99:58:2072:99:3519:-269.658,0,-139.489	0/0:151:148,2:148:5232:2:72:0,-38.5703,-464.236	0/0:219:217,2:217:7672:2:68:0,-59.4679,-684.063
chr08	6552916	.	CCA	CCC	70009.2	PASS	AB=0.428047;ABP=76.4454;AC=152;AF=0.808511;AN=188;AO=3353;CIGAR=2M1X;DP=4310;DPB=4310;DPRA=0;EPP=7283.96;EPPR=2035.51;GTI=1;LEN=1;MEANALT=1.15957;MQM=59.9916;MQMR=60;NS=94;NUMALT=1;ODDS=0.0157155;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117424;QR=32356;RO=936;RPL=3353;RPP=7283.96;RPPR=2035.51;RPR=0;RUN=1;SAF=3353;SAP=7283.96;SAR=0;SRF=936;SRP=2035.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:667:-60.3546,-5.71957,0	1/1:31:0,31:0:0:31:1071:-96.6945,-9.33193,0	0/1:49:32,17:32:1111:17:608:-40.3016,0,-85.5455	1/1:80:0,80:0:0:80:2835:-255.39,-24.0824,0	0/1:32:22,10:22:758:10:360:-23.1113,0,-58.9031	0/1:49:33,16:33:1104:16:567:-36.6103,0,-84.9076	1/1:65:0,64:0:0:64:2262:-203.591,-19.2659,0	1/1:44:0,44:0:0:44:1566:-141.231,-13.2453,0	1/1:30:0,30:0:0:30:1048:-94.6273,-9.0309,0	1/1:62:0,62:0:0:62:2185:-196.912,-18.6639,0	1/1:47:1,45:1:28:45:1557:-137.641,-11.3026,0	1/1:45:0,45:0:0:45:1558:-140.506,-13.5464,0	1/1:52:0,52:0:0:52:1786:-161.018,-15.6536,0	1/1:77:0,77:0:0:77:2654:-239.104,-23.1793,0	1/1:35:0,35:0:0:35:1211:-109.289,-10.5361,0	1/1:33:0,33:0:0:33:1147:-103.534,-9.93399,0	1/1:54:0,54:0:0:54:1860:-167.674,-16.2556,0	1/1:47:0,46:0:0:46:1601:-144.016,-13.8474,0	1/1:31:0,30:0:0:30:1060:-95.3517,-9.0309,0	1/1:61:0,61:0:0:61:2115:-190.614,-18.3628,0	1/1:39:0,38:0:0:38:1326:-119.405,-11.4391,0	0/1:39:28,11:28:974:11:396:-24.2426,0,-76.2315	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:84:42,42:42:1437:42:1483:-108.477,0,-104.334	1/1:49:0,48:0:0:48:1687:-151.861,-14.4494,0	0/1:133:78,55:78:2693:55:1928:-133.758,0,-202.577	0/1:90:57,32:57:1946:32:1131:-74.9465,0,-148.262	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	1/1:70:0,70:0:0:70:2463:-221.92,-21.0721,0	1/1:65:3,61:3:104:61:2119:-181.305,-9.79953,0	0/1:52:23,29:23:801:29:1007:-75.2849,0,-56.7544	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:5:1,4:1:27:4:144:-11.8085,0,-1.19463	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:151:0,151:0:0:151:5201:-468.237,-45.4555,0	0/1:104:57,47:57:2005:47:1654:-117.839,0,-149.417	0/1:52:27,25:27:935:25:874:-63.3217,0,-68.8081	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:19:10,9:10:357:9:316:-23.0587,0,-26.7525	0/1:29:13,16:13:456:16:559:-41.9066,0,-32.644	0/1:89:64,25:64:2217:25:868:-51.6413,0,-173.005	0/1:41:18,22:18:622:22:755:-55.8936,0,-43.9313	1/1:58:0,58:0:0:58:2014:-181.532,-17.4597,0	0/1:41:31,10:31:1102:10:345:-19.0386,0,-87.148	0/1:26:10,16:10:350:16:563:-43.1724,0,-24.0102	0/1:81:40,41:40:1372:41:1436:-105.149,0,-99.3887	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	1/1:48:0,48:0:0:48:1689:-152.294,-14.4494,0	1/1:41:0,41:0:0:41:1434:-129.354,-12.3422,0	0/1:5:3,2:3:105:2:53:-3.52915,0,-8.29082	0/1:43:23,20:23:813:20:700:-50.3772,0,-60.5471	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/1:7:1,6:1:36:6:208:-16.9519,0,-1.49106	0/1:18:8,10:8:280:10:325:-24.147,0,-20.1207	0/1:16:5,11:5:167:11:381:-29.8042,0,-10.5416	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:27:10,17:10:339:17:612:-47.2856,0,-22.7099	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:84:0,84:0:0:84:2972:-267.713,-25.2865,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:68:34,34:34:1163:34:1215:-89.1857,0,-84.4998	1/1:64:1,63:1:36:63:2248:-198.985,-15.6676,0	1/1:57:0,57:0:0:57:2014:-181.532,-17.1587,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:33:0,33:0:0:33:1171:-105.697,-9.93399,0	0/1:80:70,10:70:2410:10:356:-8.29885,0,-193.073	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:34:0,34:0:0:34:1186:-107.041,-10.235,0	1/1:97:0,97:0:0:97:3370:-303.516,-29.1999,0	1/1:21:0,21:0:0:21:735:-66.4429,-6.32163,0	1/1:74:0,74:0:0:74:2560:-230.648,-22.2762,0	0/1:47:29,17:29:989:17:604:-40.4837,0,-75.1083	1/1:80:0,80:0:0:80:2854:-257.097,-24.0824,0	1/1:53:0,53:0:0:53:1874:-168.938,-15.9546,0	1/1:62:0,61:0:0:61:2158:-194.235,-18.3628,0	1/1:17:0,17:0:0:17:590:-53.4242,-5.11751,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	1/1:28:0,28:0:0:28:991:-89.5035,-8.42884,0	0/1:25:16,9:16:553:9:320:-21.6166,0,-42.5697	1/1:72:0,68:0:0:68:2419:-217.606,-20.47,0	1/1:99:0,99:0:0:99:3439:-309.724,-29.802,0	1/1:49:0,49:0:0:49:1695:-152.833,-14.7505,0	0/1:52:22,30:22:763:30:1047:-78.8857,0,-53.3352	1/1:105:0,103:0:0:103:3607:-324.544,-31.0061,0	1/1:21:0,20:0:0:20:682:-61.3573,-6.0206,0	0/1:62:34,28:34:1186:28:955:-67.5925,0,-88.3818	1/1:51:0,48:0:0:48:1650:-148.438,-14.4494,0	0/1:29:14,15:14:488:15:536:-39.8449,0,-35.5202	0/1:75:37,38:37:1294:38:1319:-96.4287,0,-94.1829	0/1:43:30,13:30:1011:13:464:-29.1532,0,-78.3482	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:49:0,49:0:0:49:1688:-152.201,-14.7505,0
chr08	6568797	.	T	C	140686	PASS	AB=0.487483;ABP=7.03296;AC=151;AF=0.811828;AN=186;AO=6536;CIGAR=1X;DP=8067;DPB=8067;DPRA=0;EPP=14195.8;EPPR=3314.51;GTI=0;LEN=1;MEANALT=1.06452;MQM=59.9818;MQMR=59.9862;NS=93;NUMALT=1;ODDS=1.40253;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232538;QR=54553;RO=1525;RPL=6536;RPP=14195.8;RPPR=3314.51;RPR=0;RUN=1;SAF=0;SAP=14195.8;SAR=6536;SRF=0;SRP=3314.51;SRR=1525;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:92:0,92:0:0:92:3281:-295.509,-27.6948,0	0/1:95:40,54:40:1421:54:1900:-142.617,0,-99.5289	1/1:112:0,112:0:0:112:4009:-360.997,-33.7154,0	0/1:31:16,15:16:572:15:540:-39.6046,0,-42.4815	0/1:46:24,22:24:864:22:788:-57.3974,0,-64.2352	1/1:123:1,122:1:36:122:4305:-384.025,-33.4284,0	1/1:114:0,113:0:0:113:4024:-361.988,-34.0164,0	1/1:70:0,70:0:0:70:2482:-223.631,-21.0721,0	1/1:93:0,93:0:0:93:3306:-297.757,-27.9958,0	1/1:94:0,94:0:0:94:3357:-302.343,-28.2968,0	1/1:85:0,85:0:0:85:3031:-273.02,-25.5876,0	1/1:71:0,71:0:0:71:2485:-223.896,-21.3731,0	1/1:128:0,128:0:0:128:4529:-407.777,-38.5318,0	1/1:65:2,63:2:72:63:2240:-195.027,-12.7302,0	1/1:62:0,62:0:0:62:2209:-199.073,-18.6639,0	1/1:94:0,94:0:0:94:3353:-301.985,-28.2968,0	1/1:72:0,72:0:0:72:2563:-230.919,-21.6742,0	1/1:64:0,64:0:0:64:2289:-206.269,-19.2659,0	1/1:174:0,174:0:0:174:6218:-559.714,-52.3792,0	1/1:108:0,107:0:0:107:3794:-341.297,-32.2102,0	0/1:33:26,7:26:917:7:252:-13.095,0,-72.9106	1/1:114:0,114:0:0:114:4043:-364.055,-34.3174,0	0/1:106:49,57:49:1748:57:2025:-150.612,0,-125.695	1/1:41:0,41:0:0:41:1446:-130.432,-12.3422,0	0/1:236:127,109:127:4544:109:3863:-276.82,0,-338.084	0/1:143:95,48:95:3412:48:1724:-112.398,0,-264.246	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	1/1:142:0,142:0:0:142:5085:-457.792,-42.7463,0	1/1:139:4,135:4:144:135:4829:-421.45,-28.5296,0	0/1:167:78,89:78:2781:89:3146:-233.093,0,-200.258	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:248:0,248:0:0:248:8810:-792.83,-74.6554,0	0/1:159:77,82:77:2711:82:2931:-216.156,0,-196.367	0/1:101:55,46:55:1968:46:1656:-118.924,0,-146.991	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:99:44,55:44:1584:55:1976:-148.313,0,-113.05	0/1:33:10,23:10:356:23:828:-64.9101,0,-22.4473	0/1:109:54,55:54:1928:55:1945:-142.512,0,-140.984	0/1:92:50,42:50:1800:42:1512:-108.68,0,-134.587	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	0/1:164:74,90:74:2652:90:3209:-239.663,0,-189.557	0/1:87:46,41:46:1648:41:1472:-106.587,0,-122.419	0/1:116:67,49:67:2408:49:1760:-123.764,0,-182.057	1/1:105:0,105:0:0:105:3741:-336.888,-31.6082,0	1/1:92:0,92:0:0:92:3285:-295.868,-27.6948,0	1/1:100:0,100:0:0:100:3523:-317.277,-30.103,0	0/1:12:5,7:5:180:7:237:-18.0467,0,-12.9397	0/1:81:39,42:39:1396:42:1493:-110.279,0,-101.556	0/1:63:33,30:33:1188:30:1076:-78.188,0,-88.2637	0/1:17:5,12:5:180:12:428:-33.7413,0,-11.4346	0/1:66:43,23:43:1544:23:820:-54.2545,0,-119.384	0/1:74:30,44:30:1080:44:1572:-119.495,0,-75.237	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	1/1:95:0,95:0:0:95:3363:-302.884,-28.5979,0	1/1:152:0,152:0:0:152:5373:-483.7,-45.7566,0	.:.:.:.:.:.:.:.	0/1:74:35,38:35:1233:38:1364:-100.726,0,-88.9373	1/1:118:0,118:0:0:118:4182:-376.562,-35.5215,0	1/1:79:0,79:0:0:79:2810:-253.139,-23.7814,0	1/1:49:1,48:1:36:48:1720:-151.487,-11.1522,0	1/1:161:1,160:1:36:160:5685:-508.17,-44.8676,0	0/1:99:50,49:50:1800:49:1756:-128.522,0,-132.48	1/1:47:1,46:1:36:46:1652:-145.37,-10.5501,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:105:0,104:0:0:104:3706:-333.38,-31.3071,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:90:0,90:0:0:90:3202:-288.401,-27.0927,0	0/1:32:12,20:12:424:20:696:-53.3272,0,-28.8635	1/1:203:0,203:0:0:203:7202:-648.232,-61.1091,0	1/1:117:0,117:0:0:117:4159:-374.49,-35.2205,0	1/1:52:0,52:0:0:52:1834:-165.335,-15.6536,0	1/1:65:2,63:2:68:63:2211:-192.792,-13.1092,0	0/1:26:9,17:9:324:17:612:-47.5867,0,-21.6791	1/1:79:1,78:1:36:78:2736:-242.88,-20.1831,0	0/1:69:36,33:36:1288:33:1165:-84.3768,0,-95.4525	1/1:138:0,138:0:0:138:4872:-438.635,-41.5421,0	1/1:144:0,144:0:0:144:5123:-461.209,-43.3483,0	1/1:64:0,64:0:0:64:2300:-206.771,-19.2659,0	0/1:93:49,44:49:1764:44:1546:-111.432,0,-131.048	1/1:163:0,163:0:0:163:5829:-524.719,-49.0679,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:103:66,36:66:2353:36:1288:-85.3045,0,-181.107	1/1:89:0,89:0:0:89:3141:-282.915,-26.7917,0	0/1:74:36,38:36:1296:38:1345:-99.0719,0,-94.6677	0/1:159:76,83:76:2717:83:2980:-220.568,0,-196.908	0/1:78:46,32:46:1652:32:1129:-78.436,0,-125.488	1/1:69:0,69:0:0:69:2453:-221.023,-20.7711,0	1/1:118:0,118:0:0:118:4218:-379.799,-35.5215,0
chr08	6604698	.	CATGA	GATGC,CATGC	101927	PASS	AB=0.533506,0.462338;ABP=21.782,26.7273;AC=150,34;AF=0.815217,0.184783;AN=184;AO=3886,897;CIGAR=1X3M1X,4M1X;DP=4800;DPB=4801.2;DPRA=0,1.13866;EPP=8441.35,1950.82;EPPR=9.52472;GTI=0;LEN=5,1;MEANALT=1.52174,2.13514;MQM=54.0319,59.981;MQMR=60;NS=92;NUMALT=2;ODDS=0.0566973;PAIRED=0,0;PAIREDR=0;PAO=3,3;PQA=93,93;PQR=0;PRO=0;QA=136579,32092;QR=98;RO=3;RPL=0,0;RPP=8441.35,1950.82;RPPR=9.52472;RPR=3886,897;RUN=1,1;SAF=3886,897;SAP=8441.35,1950.82;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43,0:0:0:43,0:1519,0:-136.006,-12.9443,0,-136.006,-12.9443,-136.006	1/1:59:0,59,0:0:0:59,0:2068,0:-185.664,-17.7608,0,-185.664,-17.7608,-185.664	1/2:66:0,28,38:0:0:28,38:975,1349:-189.09,-110.211,-101.782,-79.1726,0,-67.7334	1/1:97:0,97,0:0:0:97,0:3409,0:-306.311,-29.1999,0,-306.311,-29.1999,-306.311	1/2:73:0,54,19:0:0:54,19:1897,680:-209.79,-55.8096,-39.554,-154.336,0,-148.617	1/2:13:0,3,10:0:0:3,10:108,360:-38.5216,-29.734,-28.8309,-9.14675,0,-6.13645	1/1:24:0,24,0:0:0:24,0:844,0:-76.2044,-7.22472,0,-76.2044,-7.22472,-76.2044	1/1:82:0,82,0:0:0:82,0:2867,0:-256.614,-24.6845,0,-256.614,-24.6845,-256.614	1/1:82:0,82,0:0:0:82,0:2868,0:-257.638,-24.6845,0,-257.638,-24.6845,-257.638	1/1:54:0,54,0:0:0:54,0:1905,0:-171.219,-16.2556,0,-171.219,-16.2556,-171.219	1/1:22:0,22,0:0:0:22,0:770,0:-69.5743,-6.62266,0,-69.5743,-6.62266,-69.5743	1/1:60:0,60,0:0:0:60,0:2103,0:-189.032,-18.0618,0,-189.032,-18.0618,-189.032	1/1:39:0,38,0:0:0:38,0:1328,0:-118.878,-11.4391,0,-118.878,-11.4391,-118.878	1/1:13:0,13,0:0:0:13,0:458,0:-41.3536,-3.91339,0,-41.3536,-3.91339,-41.3536	1/1:32:0,32,0:0:0:32,0:1134,0:-102.292,-9.63296,0,-102.292,-9.63296,-102.292	1/1:25:0,25,0:0:0:25,0:872,0:-78.529,-7.52575,0,-78.529,-7.52575,-78.529	1/1:11:0,11,0:0:0:11,0:393,0:-35.4383,-3.31133,0,-35.4383,-3.31133,-35.4383	1/1:10:0,10,0:0:0:10,0:354,0:-32.1233,-3.0103,0,-32.1233,-3.0103,-32.1233	1/1:23:0,23,0:0:0:23,0:808,0:-72.8775,-6.92369,0,-72.8775,-6.92369,-72.8775	1/1:54:0,54,0:0:0:54,0:1865,0:-167.532,-16.2556,0,-167.532,-16.2556,-167.532	1/1:105:0,105,0:0:0:105,0:3701,0:-332.511,-31.6082,0,-332.511,-31.6082,-332.511	1/2:75:0,34,40:0:0:34,40:1203,1424:-213.967,-116.066,-105.831,-97.9056,0,-85.8644	1/1:42:0,42,0:0:0:42,0:1474,0:-132.864,-12.6433,0,-132.864,-12.6433,-132.864	1/2:21:0,14,7:0:0:14,7:501,252:-61.709,-20.9217,-16.7073,-41.1462,0,-39.039	1/1:67:0,67,0:0:0:67,0:2397,0:-215.321,-20.169,0,-215.321,-20.169,-215.321	1/2:194:1,107,85:1:26:107,85:3746,3048:-550.444,-246.613,-216.441,-302.137,0,-278.588	1/2:170:1,107,60:1:36:107,60:3760,2148:-476.918,-172.228,-142.956,-302.049,0,-286.925	1/1:14:0,14,0:0:0:14,0:502,0:-45.4401,-4.21442,0,-45.4401,-4.21442,-45.4401	1/1:132:0,132,0:0:0:132,0:4621,0:-415.85,-39.736,0,-415.85,-39.736,-415.85	1/1:98:0,93,4:0:0:93,4:3228,144:-289.576,-27.9958,0,-277.826,-16.2461,-276.622	1/2:86:1,52,33:1:36:52,33:1838,1188:-242.887,-93.9974,-81.2812,-146.25,0,-139.253	1/2:6:0,5,1:0:0:5,1:180,36:-17.9609,-3.29724,-1.79209,-15.0234,0,-14.7224	1/1:28:0,28,0:0:0:28,0:975,0:-85.7515,-8.42884,0,-85.7515,-8.42884,-85.7515	.:.:.:.:.:.:.:.	1/1:9:0,9,0:0:0:9,0:316,0:-28.7132,-2.70927,0,-28.7132,-2.70927,-28.7132	1/1:14:0,14,0:0:0:14,0:500,0:-45.2272,-4.21442,0,-45.2272,-4.21442,-45.2272	1/1:106:0,106,0:0:0:106,0:3748,0:-337.301,-31.9092,0,-337.301,-31.9092,-337.301	1/2:108:0,75,33:0:0:75,33:2640,1184:-311.306,-96.9343,-74.3571,-214.728,0,-204.794	1/2:22:0,12,10:0:0:12,10:408,356:-62.3758,-29.3709,-25.7586,-33.3531,0,-30.3428	1/1:4:0,4,0:0:0:4,0:144,0:-13.2911,-1.20412,0,-13.2911,-1.20412,-13.2911	1/2:84:0,32,52:0:0:32,52:1133,1864:-244.409,-152.386,-142.753,-92.3784,0,-76.7249	1/2:15:0,10,5:0:0:10,5:359,180:-44.2854,-15.0469,-12.0366,-29.5978,0,-28.0927	1/2:108:0,51,56:0:0:51,56:1808,2000:-310.037,-162.997,-147.645,-146.977,0,-130.119	1/2:17:0,8,9:0:0:8,9:281,324:-49.6268,-26.7966,-24.3883,-23.1851,0,-20.4759	1/1:35:0,35,0:0:0:35,0:1229,0:-110.724,-10.5361,0,-110.724,-10.5361,-110.724	1/2:34:0,18,16:0:0:18,16:607,572:-96.1495,-46.9969,-41.5784,-49.5003,0,-44.6838	1/2:64:0,45,19:0:0:45,19:1577,680:-183.177,-55.7526,-42.2063,-127.723,0,-122.003	1/2:91:0,45,46:0:0:45,46:1593,1640:-263.528,-134.041,-120.495,-129.841,0,-115.994	1/1:67:0,67,0:0:0:67,0:2356,0:-211.885,-20.169,0,-211.885,-20.169,-211.885	1/1:30:0,30,0:0:0:30,0:1028,0:-92.7596,-9.0309,0,-92.7596,-9.0309,-92.7596	1/1:43:0,43,0:0:0:43,0:1536,0:-138.262,-12.9443,0,-138.262,-12.9443,-138.262	1/2:4:0,3,1:0:0:3,1:107,36:-12.0106,-3.29724,-2.39415,-9.07231,0,-8.77128	1/2:94:0,32,62:0:0:32,62:1106,2204:-269.575,-179.962,-170.329,-89.9613,0,-71.2975	1/2:19:0,9,10:0:0:9,10:317,360:-55.5031,-29.7054,-26.9961,-26.1533,0,-23.143	.:.:.:.:.:.:.:.	1/2:75:0,41,34:0:0:41,34:1443,1216:-216.697,-99.511,-87.1687,-117.54,0,-107.305	1/2:36:0,21,15:0:0:21,15:733,540:-103.902,-44.4211,-38.0995,-59.8356,0,-55.3202	1/1:8:0,8,0:0:0:8,0:281,0:-25.6089,-2.40824,0,-25.6089,-2.40824,-25.6089	1/2:6:0,2,4:0:0:2,4:72,144:-17.9825,-12.1095,-11.5074,-6.23275,0,-5.02863	1/1:45:0,45,0:0:0:45,0:1590,0:-142.967,-13.5464,0,-142.967,-13.5464,-142.967	1/1:91:0,91,0:0:0:91,0:3209,0:-288.355,-27.3937,0,-288.355,-27.3937,-288.355	1/1:4:0,4,0:0:0:4,0:143,0:-13.2123,-1.20412,0,-13.2123,-1.20412,-13.2123	1/2:73:0,48,25:0:0:48,25:1680,900:-210.371,-73.7953,-59.3458,-136.932,0,-129.406	1/1:75:0,75,0:0:0:75,0:2624,0:-236.089,-22.5773,0,-236.089,-22.5773,-236.089	1/1:19:0,18,1:0:0:18,1:617,36:-55.3421,-5.41854,0,-52.4037,-2.1213,-52.1027	1/1:41:0,41,0:0:0:41,0:1444,0:-129.755,-12.3422,0,-129.755,-12.3422,-129.755	1/1:64:0,63,0:0:0:63,0:2175,0:-195.019,-18.9649,0,-195.019,-18.9649,-195.019	1/2:80:0,29,51:0:0:29,51:1022,1820:-231.783,-148.729,-139.999,-83.4081,0,-68.0556	1/1:28:0,28,0:0:0:28,0:994,0:-89.6526,-8.42884,0,-89.6526,-8.42884,-89.6526	1/1:21:0,21,0:0:0:21,0:746,0:-67.0693,-6.32163,0,-67.0693,-6.32163,-67.0693	1/1:29:0,29,0:0:0:29,0:1026,0:-92.6003,-8.72987,0,-92.6003,-8.72987,-92.6003	1/1:12:0,12,0:0:0:12,0:424,0:-38.4481,-3.61236,0,-38.4481,-3.61236,-38.4481	1/1:113:0,113,0:0:0:113,0:3932,0:-352.804,-34.0164,0,-352.804,-34.0164,-352.804	1/2:54:0,21,33:0:0:21,33:738,1180:-156.491,-96.5717,-90.2501,-60.2721,0,-50.3381	1/1:76:0,76,0:0:0:76,0:2668,0:-240.056,-22.8783,0,-240.056,-22.8783,-240.056	1/1:51:0,51,0:0:0:51,0:1812,0:-163.179,-15.3525,0,-163.179,-15.3525,-163.179	1/1:120:0,120,0:0:0:120,0:4211,0:-377.374,-36.1236,0,-377.374,-36.1236,-377.374	1/1:40:0,38,2:0:0:38,2:1341,72:-120.347,-11.4391,0,-114.472,-5.20448,-113.87	1/2:11:0,6,5:0:0:6,5:210,180:-32.0865,-15.0469,-13.2407,-17.3945,0,-15.8894	1/1:42:0,40,0:0:0:40,0:1408,0:-126.472,-12.0412,0,-126.472,-12.0412,-126.472	1/2:57:0,33,24:0:0:33,24:1151,864:-163.534,-70.8578,-60.9239,-93.0303,0,-85.8056	1/1:174:0,171,0:0:0:171,0:6039,0:-542.349,-51.4761,0,-542.349,-51.4761,-542.349	1/1:37:0,37,0:0:0:37,0:1304,0:-117.557,-11.1381,0,-117.557,-11.1381,-117.557	1/1:25:0,25,0:0:0:25,0:876,0:-78.9526,-7.52575,0,-78.9526,-7.52575,-78.9526	1/2:29:0,11,18:0:0:11,18:383,648:-84.349,-53.2333,-49.922,-31.468,0,-26.0495	1/1:79:0,79,0:0:0:79,0:2792,0:-251.07,-23.7814,0,-251.07,-23.7814,-251.07	1/1:17:0,17,0:0:0:17,0:612,0:-54.9779,-5.11751,0,-54.9779,-5.11751,-54.9779	1/2:40:0,18,22:0:0:18,22:635,788:-115.256,-64.6221,-59.2036,-50.9857,0,-44.363	1/1:36:0,35,0:0:0:35,0:1230,0:-110.4,-10.5361,0,-110.4,-10.5361,-110.4	1/2:16:0,9,7:0:0:9,7:317,252:-46.6792,-20.9217,-18.2125,-26.1137,0,-24.0065	1/2:40:0,25,15:0:0:25,15:881,536:-115.65,-44.0594,-36.5336,-71.9454,0,-67.4299	1/2:44:0,19,25:0:0:19,25:676,887:-127.394,-72.6224,-66.9028,-55.1262,0,-47.6004	1/1:53:0,53,0:0:0:53,0:1845,0:-165.773,-15.9546,0,-165.773,-15.9546,-165.773	1/1:51:0,51,0:0:0:51,0:1831,0:-164.739,-15.3525,0,-164.739,-15.3525,-164.739
chr08	6604747	.	CAC	TAT,TAC	102015	PASS	AB=0.535863,0.45894;ABP=24.5038,31.1853;AC=150,34;AF=0.815217,0.184783;AN=184;AO=3913,892;CIGAR=1X1M1X,1X2M;DP=4823;DPB=4823.67;DPRA=0,1.17361;EPP=8499.98,1939.96;EPPR=7.35324;GTI=1;LEN=3,1;MEANALT=1.57609,2.20513;MQM=54.1605,59.9339;MQMR=60;NS=92;NUMALT=2;ODDS=0.319601;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=137163,31834;QR=72;RO=2;RPL=3913,892;RPP=8499.98,1939.96;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=3913,892;SAP=8499.98,1939.96;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42,0:0:0:42,0:1491,0:-133.537,-12.6433,0,-133.537,-12.6433,-133.537	1/1:58:0,58,0:0:0:58,0:2036,0:-182.713,-17.4597,0,-182.713,-17.4597,-182.713	1/2:66:0,28,38:0:0:28,38:953,1351:-187.398,-110.45,-102.022,-77.2933,0,-65.8542	1/1:100:0,98,0:0:0:98,0:3467,0:-311.334,-29.5009,0,-311.334,-29.5009,-311.334	1/2:74:0,55,19:0:0:55,19:1925,676:-211.637,-55.4484,-38.8918,-156.543,0,-150.823	1/2:13:0,3,10:0:0:3,10:108,356:-38.1595,-29.3709,-28.4679,-9.14675,0,-6.13645	1/1:25:0,24,0:0:0:24,0:850,0:-76.4547,-7.22472,0,-76.4547,-7.22472,-76.4547	1/1:81:0,81,0:0:0:81,0:2810,0:-251.743,-24.3834,0,-251.743,-24.3834,-251.743	1/1:82:0,81,1:0:0:81,1:2835,36:-254.182,-24.3834,0,-251.244,-21.0862,-250.943	1/1:53:0,53,0:0:0:53,0:1876,0:-168.653,-15.9546,0,-168.653,-15.9546,-168.653	1/1:22:0,22,0:0:0:22,0:772,0:-69.7522,-6.62266,0,-69.7522,-6.62266,-69.7522	1/1:61:0,61,0:0:0:61,0:2117,0:-190.315,-18.3628,0,-190.315,-18.3628,-190.315	1/1:39:0,39,0:0:0:39,0:1361,0:-122.222,-11.7402,0,-122.222,-11.7402,-122.222	1/1:13:0,13,0:0:0:13,0:455,0:-41.0872,-3.91339,0,-41.0872,-3.91339,-41.0872	1/1:32:0,32,0:0:0:32,0:1125,0:-101.483,-9.63296,0,-101.483,-9.63296,-101.483	1/1:25:0,25,0:0:0:25,0:870,0:-78.3519,-7.52575,0,-78.3519,-7.52575,-78.3519	1/1:11:0,11,0:0:0:11,0:388,0:-34.9925,-3.31133,0,-34.9925,-3.31133,-34.9925	1/1:11:0,11,0:0:0:11,0:375,0:-34.0082,-3.31133,0,-34.0082,-3.31133,-34.0082	1/1:23:0,23,0:0:0:23,0:816,0:-73.5893,-6.92369,0,-73.5893,-6.92369,-73.5893	1/1:54:0,53,0:0:0:53,0:1853,0:-166.694,-15.9546,0,-166.694,-15.9546,-166.694	1/1:103:0,103,0:0:0:103,0:3599,0:-323.286,-31.0061,0,-323.286,-31.0061,-323.286	1/2:73:0,34,39:0:0:34,39:1210,1396:-212.727,-114.199,-103.964,-98.8851,0,-87.1449	1/1:43:0,43,0:0:0:43,0:1526,0:-137.534,-12.9443,0,-137.534,-12.9443,-137.534	1/2:21:0,14,7:0:0:14,7:504,248:-61.6164,-20.557,-16.3426,-41.4153,0,-39.3081	1/1:68:0,67,1:0:0:67,1:2363,36:-212.283,-20.169,0,-209.345,-16.8718,-209.044	1/2:194:0,108,86:0:0:108,86:3744,3088:-555.871,-252.259,-219.747,-303.966,0,-278.077	1/2:171:0,106,61:0:0:106,61:3717,2167:-478.03,-176.639,-144.73,-301.448,0,-283.085	1/1:14:0,14,0:0:0:14,0:504,0:-45.6154,-4.21442,0,-45.6154,-4.21442,-45.6154	1/1:132:0,132,0:0:0:132,0:4635,0:-417.125,-39.736,0,-417.125,-39.736,-417.125	1/1:99:0,95,4:0:0:95,4:3301,144:-296.158,-28.5979,0,-284.408,-16.4884,-283.204	1/2:86:0,53,33:0:0:53,33:1877,1170:-247.959,-95.5645,-79.6099,-152.748,0,-142.814	1/2:6:0,5,1:0:0:5,1:176,36:-17.5989,-3.29724,-1.79209,-14.6601,0,-14.359	1/1:28:0,28,0:0:0:28,0:969,0:-85.6807,-8.42884,0,-85.6807,-8.42884,-85.6807	.:.:.:.:.:.:.:.	1/1:9:0,9,0:0:0:9,0:309,0:-28.0817,-2.70927,0,-28.0817,-2.70927,-28.0817	1/1:14:0,14,0:0:0:14,0:492,0:-44.5127,-4.21442,0,-44.5127,-4.21442,-44.5127	1/1:106:0,106,0:0:0:106,0:3729,0:-335.582,-31.9092,0,-335.582,-31.9092,-335.582	1/2:109:2,75,31:2:72:75,31:2627,1116:-297.819,-85.1874,-68.485,-207.358,0,-203.902	1/2:21:0,11,10:0:0:11,10:394,352:-61.0562,-29.0079,-25.6966,-32.4027,0,-29.3924	1/1:4:0,4,0:0:0:4,0:134,0:-12.3737,-1.20412,0,-12.3737,-1.20412,-12.3737	1/2:85:0,32,53:0:0:32,53:1126,1904:-247.077,-155.683,-146.05,-91.7477,0,-75.7931	1/2:15:0,10,5:0:0:10,5:355,180:-43.9268,-15.0469,-12.0366,-29.2379,0,-27.7328	1/2:108:0,50,57:0:0:50,57:1778,2030:-310.117,-165.472,-150.421,-144.66,0,-127.501	1/2:17:0,8,9:0:0:8,9:285,324:-49.9876,-26.7966,-24.3883,-23.5485,0,-20.8393	1/1:35:0,35,0:0:0:35,0:1225,0:-110.362,-10.5361,0,-110.362,-10.5361,-110.362	1/2:34:0,18,15:0:0:18,15:644,525:-95.3137,-42.8064,-37.3878,-52.6018,0,-48.0864	1/2:65:0,46,19:0:0:46,19:1610,684:-186.17,-56.1708,-42.3234,-130.355,0,-124.636	1/2:90:0,45,45:0:0:45,45:1597,1587:-259.377,-129.571,-116.024,-130.16,0,-116.613	1/1:68:0,68,0:0:0:68,0:2336,0:-210.147,-20.47,0,-210.147,-20.47,-210.147	1/1:30:0,30,0:0:0:30,0:1039,0:-93.6745,-9.0309,0,-93.6745,-9.0309,-93.6745	1/1:43:0,43,0:0:0:43,0:1521,0:-136.908,-12.9443,0,-136.908,-12.9443,-136.908	1/2:4:0,3,1:0:0:3,1:108,36:-12.1023,-3.29724,-2.39415,-9.16481,0,-8.86378	1/2:92:0,32,60:0:0:32,60:1115,2124:-263.76,-173.364,-163.731,-90.7457,0,-72.6839	1/2:19:0,9,10:0:0:9,10:303,350:-53.361,-28.8225,-26.1132,-24.8813,0,-21.871	.:.:.:.:.:.:.:.	1/2:76:0,42,33:0:0:42,33:1459,1188:-215.398,-97.022,-84.3787,-118.457,0,-108.523	1/2:37:0,21,16:0:0:21,16:748,576:-108.182,-47.3585,-41.0369,-61.1812,0,-56.3648	1/1:8:0,8,0:0:0:8,0:288,0:-26.2043,-2.40824,0,-26.2043,-2.40824,-26.2043	1/2:5:0,2,3:0:0:2,3:72,104:-14.678,-8.79971,-8.19765,-6.23275,0,-5.32966	1/1:46:0,46,0:0:0:46,0:1591,0:-143.087,-13.8474,0,-143.087,-13.8474,-143.087	1/1:92:0,92,0:0:0:92,0:3250,0:-291.929,-27.6948,0,-291.929,-27.6948,-291.929	1/1:4:0,4,0:0:0:4,0:144,0:-13.304,-1.20412,0,-13.304,-1.20412,-13.304	1/2:73:0,49,24:0:0:49,24:1722,864:-210.848,-70.8578,-56.1074,-140.347,0,-133.123	1/1:76:0,76,0:0:0:76,0:2668,0:-240.032,-22.8783,0,-240.032,-22.8783,-240.032	1/1:21:0,20,1:0:0:20,1:682,36:-61.2115,-6.0206,0,-58.2732,-2.72336,-57.9722	1/1:43:0,43,0:0:0:43,0:1516,0:-136.215,-12.9443,0,-136.215,-12.9443,-136.215	1/1:64:0,63,0:0:0:63,0:2188,0:-196.456,-18.9649,0,-196.456,-18.9649,-196.456	1/2:77:0,29,48:0:0:29,48:983,1716:-219.899,-140.276,-131.546,-79.9682,0,-65.5188	1/1:28:0,28,0:0:0:28,0:993,0:-89.5618,-8.42884,0,-89.5618,-8.42884,-89.5618	1/1:21:0,21,0:0:0:21,0:732,0:-65.8731,-6.32163,0,-65.8731,-6.32163,-65.8731	1/1:29:0,29,0:0:0:29,0:1023,0:-92.2828,-8.72987,0,-92.2828,-8.72987,-92.2828	1/1:12:0,12,0:0:0:12,0:408,0:-37.0073,-3.61236,0,-37.0073,-3.61236,-37.0073	1/1:114:0,114,0:0:0:114,0:3955,0:-354.998,-34.3174,0,-354.998,-34.3174,-354.998	1/2:55:0,21,34:0:0:21,34:748,1220:-160.677,-99.8694,-93.5478,-61.1642,0,-50.9292	1/1:78:0,78,0:0:0:78,0:2769,0:-249.13,-23.4803,0,-249.13,-23.4803,-249.13	1/1:51:0,51,0:0:0:51,0:1795,0:-161.639,-15.3525,0,-161.639,-15.3525,-161.639	1/1:122:0,122,0:0:0:122,0:4296,0:-385.099,-36.7257,0,-385.099,-36.7257,-385.099	1/1:41:0,39,2:0:0:39,2:1383,72:-124.116,-11.7402,0,-118.241,-5.50551,-117.639	1/2:11:0,6,5:0:0:6,5:196,176:-30.4579,-14.6799,-12.8737,-16.1181,0,-14.613	1/1:43:0,43,0:0:0:43,0:1492,0:-134.384,-12.9443,0,-134.384,-12.9443,-134.384	1/2:57:0,33,24:0:0:33,24:1146,851:-161.907,-69.6847,-59.7507,-92.5726,0,-85.3479	1/1:177:0,177,0:0:0:177,0:6195,0:-556.692,-53.2823,0,-556.692,-53.2823,-556.692	1/1:37:0,36,0:0:0:36,0:1268,0:-114,-10.8371,0,-114,-10.8371,-114	1/1:25:0,25,0:0:0:25,0:884,0:-79.6554,-7.52575,0,-79.6554,-7.52575,-79.6554	1/2:29:0,11,18:0:0:11,18:380,648:-84.0812,-53.2333,-49.922,-31.1986,0,-25.78	1/1:79:0,79,0:0:0:79,0:2775,0:-249.602,-23.7814,0,-249.602,-23.7814,-249.602	1/1:18:0,18,0:0:0:18,0:635,0:-57.0693,-5.41854,0,-57.0693,-5.41854,-57.0693	1/2:40:0,18,22:0:0:18,22:636,792:-115.709,-64.983,-59.5645,-51.079,0,-44.4564	1/1:37:0,37,0:0:0:37,0:1289,0:-116.024,-11.1381,0,-116.024,-11.1381,-116.024	1/2:16:0,9,7:0:0:9,7:317,252:-46.6855,-20.9217,-18.2125,-26.1199,0,-24.0127	1/2:40:0,25,15:0:0:25,15:889,536:-116.364,-44.0594,-36.5336,-72.661,0,-68.1455	1/2:45:0,20,25:0:0:20,25:695,887:-128.773,-72.6224,-66.6018,-56.5003,0,-48.9746	1/1:52:0,52,0:0:0:52,0:1821,0:-164.032,-15.6536,0,-164.032,-15.6536,-164.032	1/1:53:0,51,0:0:0:51,0:1797,0:-161.338,-15.3525,0,-161.338,-15.3525,-161.338
chr08	6645954	.	C	T	9777.93	PASS	AB=0.383178;ABP=218.635;AC=35;AF=0.190217;AN=184;AO=706;CIGAR=1X;DP=6280;DPB=6280;DPRA=0.71431;EPP=1536.07;EPPR=12085.1;GTI=6;LEN=1;MEANALT=1.025;MQM=60;MQMR=59.9804;NS=92;NUMALT=1;ODDS=0.82614;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25011;QR=198200;RO=5568;RPL=0;RPP=1536.07;RPPR=12085.1;RPR=706;RUN=1;SAF=0;SAP=1536.07;SAR=706;SRF=0;SRP=12093.8;SRR=5568;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/1:109:83,25:83:2972:25:880:-46.6469,0,-234.842	0/0:174:174,0:174:6184:0:0:0,-52.3792,-556.661	0/0:15:14,1:14:500:1:36:0,-0.917175,-41.7379	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:95:95,0:95:3388:0:0:0,-28.5978,-305.136	0/0:117:117,0:117:4144:0:0:0,-35.2205,-373.146	0/0:70:69,1:69:2480:1:36:0,-17.4738,-219.855	0/0:78:78,0:78:2777:0:0:0,-23.4803,-250.17	0/0:76:76,0:76:2702:0:0:0,-22.8783,-243.054	0/0:93:93,0:93:3292:0:0:0,-27.9958,-296.129	0/0:86:86,0:86:3027:0:0:0,-25.8886,-272.658	0/0:108:108,0:108:3844:0:0:0,-32.5112,-346.158	0/0:76:75,1:75:2666:1:36:0,-19.28,-236.587	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.249	0/0:50:50,0:50:1766:0:0:0,-15.0515,-159.219	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:112:112,0:112:3969:0:0:0,-33.7154,-357.4	0/0:137:137,0:137:4873:0:0:0,-41.2411,-438.722	0/1:28:22,6:22:784:6:216:-11.3617,0,-62.4551	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:37:32,5:32:1136:5:180:-5.41396,0,-91.4108	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:121:81,40:81:2891:40:1432:-92.753,0,-223.978	0/1:111:83,28:83:2923:28:985:-55.5472,0,-229.888	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/0:160:159,0:159:5681:0:0:0,-47.8638,-511.048	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:37:23,14:23:813:14:504:-34.56,0,-62.351	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:204:202,0:202:7197:0:0:0,-60.8081,-647.428	0/1:52:41,11:41:1445:11:388:-19.6038,0,-114.69	0/1:44:30,14:30:1063:14:500:-32.0909,0,-82.7355	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:62:31,31:31:1104:31:1096:-80.2861,0,-81.0068	0/1:32:18,14:18:635:14:496:-35.3413,0,-47.844	0/1:45:35,10:35:1252:10:360:-19.198,0,-99.4387	0/1:71:24,47:24:864:47:1676:-129.754,0,-56.7094	0/0:52:52,0:52:1819:0:0:0,-15.6536,-163.988	0/1:52:42,10:42:1500:10:356:-16.7277,0,-119.641	0/1:49:29,20:29:1040:20:711:-49.5652,0,-79.1639	0/1:64:39,25:39:1400:25:858:-58.2641,0,-107.033	0/0:76:75,1:75:2679:1:36:0,-19.28,-237.756	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/0:76:76,0:76:2692:0:0:0,-22.8783,-242.524	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:58:49,9:49:1760:9:316:-11.3191,0,-141.224	0/1:37:28,9:28:1000:9:320:-18.0042,0,-79.1773	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:99:54,45:54:1914:45:1591:-113.676,0,-142.734	0/1:13:9,4:9:316:4:144:-9.40023,0,-24.8655	.:.:.:.:.:.:.:.	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:56:56,0:56:1976:0:0:0,-16.8577,-178.112	0/0:127:127,0:127:4523:0:0:0,-38.2308,-407.237	.:.:.:.:.:.:.:.	0/1:143:62,81:62:2211:81:2876:-216.031,0,-156.207	0/0:104:104,0:104:3711:0:0:0,-31.3071,-334.192	0/0:93:93,0:93:3303:0:0:0,-27.9958,-297.488	0/0:68:68,0:68:2403:0:0:0,-20.47,-216.525	0/0:96:94,2:94:3353:2:57:0,-23.4856,-296.573	0/1:51:34,17:34:1199:17:604:-39.3381,0,-92.8623	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/0:73:72,1:72:2568:1:36:0,-18.3769,-227.772	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:137:135,0:135:4808:0:0:0,-40.639,-432.513	0/1:42:29,13:29:1044:13:468:-29.8164,0,-81.6315	0/0:90:90,0:90:3225:0:0:0,-27.0927,-290.47	0/0:148:148,0:148:5281:0:0:0,-44.5524,-475.423	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/0:61:61,0:61:2153:0:0:0,-18.3628,-194.033	0/1:46:35,11:35:1237:11:365:-19.3225,0,-97.7849	0/0:129:129,0:129:4614:0:0:0,-38.8329,-414.722	0/0:66:66,0:66:2335:0:0:0,-19.868,-210.407	0/0:82:82,0:82:2903:0:0:0,-24.6845,-261.507	0/1:69:35,34:35:1260:34:1197:-87.2623,0,-92.9344	0/0:129:129,0:129:4594:0:0:0,-38.8329,-413.623	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:62:25,37:25:896:37:1312:-99.7178,0,-62.2965	0/0:77:77,0:77:2727:0:0:0,-23.1793,-245.674	0/1:61:37,24:37:1299:24:860:-59.359,0,-98.8476	0/1:127:64,63:64:2287:63:2228:-162.551,0,-167.86	0/1:59:24,35:24:856:35:1247:-94.7733,0,-59.6003	0/0:103:103,0:103:3670:0:0:0,-31.0061,-330.504	0/0:93:93,0:93:3304:0:0:0,-27.9958,-297.578
chr08	6645996	.	C	T	126399	PASS	AB=0.621448;ABP=241.941;AC=149;AF=0.809783;AN=184;AO=5732;CIGAR=1X;DP=6453;DPB=6453;DPRA=35.4451;EPP=12449.9;EPPR=1562.13;GTI=7;LEN=1;MEANALT=1.03297;MQM=59.9742;MQMR=59.9791;NS=92;NUMALT=1;ODDS=0.562279;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205236;QR=25562;RO=718;RPL=5732;RPP=12449.9;RPPR=1562.13;RPR=0;RUN=1;SAF=0;SAP=12449.9;SAR=5732;SRF=0;SRP=1562.13;SRR=718;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	0/1:111:26,85:26:921:85:3056:-241.854,0,-49.7909	1/1:179:0,179:0:0:179:6338:-570.509,-53.8844,0	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	1/1:99:0,99:0:0:99:3537:-318.538,-29.802,0	1/1:117:0,117:0:0:117:4120:-370.984,-35.2205,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:84:0,84:0:0:84:2974:-267.891,-25.2865,0	1/1:78:0,78:0:0:78:2804:-252.229,-23.4803,0	1/1:99:0,98:0:0:98:3505:-314.683,-29.5009,0	1/1:88:0,88:0:0:88:3168:-285.343,-26.4906,0	1/1:115:0,115:0:0:115:4120:-370.984,-34.6185,0	1/1:77:2,75:2:72:75:2696:-236.047,-16.3426,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:47:1,46:1:36:46:1648:-145.01,-10.5501,0	1/1:115:0,115:0:0:115:4098:-369.003,-34.6185,0	1/1:141:0,141:0:0:141:5027:-452.573,-42.4452,0	0/1:29:6,23:6:216:23:828:-66.1142,0,-11.0606	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:37:5,32:5:180:32:1152:-92.852,0,-5.41395	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:125:41,84:41:1468:84:2993:-231.916,0,-94.7873	0/1:111:27,83:27:968:83:2973:-234.328,0,-53.9643	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:164:2,162:2:72:162:5801:-515.365,-42.5322,0	1/1:77:0,76:0:0:76:2726:-245.262,-22.8783,0	0/1:40:15,25:15:521:25:900:-69.2798,0,-35.1751	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:210:0,210:0:0:210:7548:-679.355,-63.2163,0	0/1:51:11,40:11:388:40:1436:-114.185,0,-19.9048	0/1:44:14,30:14:504:30:1080:-84.2679,0,-32.4528	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:65:32,33:32:1133:33:1165:-85.5881,0,-82.7097	0/1:34:14,20:14:496:20:720:-54.8938,0,-34.7392	0/1:47:12,35:12:432:35:1256:-99.1969,0,-25.0276	0/1:76:46,30:46:1648:30:1072:-73.9136,0,-125.73	1/1:55:0,55:0:0:55:1961:-176.764,-16.5567,0	0/1:56:10,46:10:360:46:1650:-131.931,0,-15.8866	0/1:51:20,31:20:675:31:1112:-85.0388,0,-45.7083	0/1:65:26,39:26:917:39:1404:-107.092,0,-63.2777	1/1:78:1,77:1:36:77:2764:-245.403,-19.8821,0	1/1:94:0,94:0:0:94:3361:-302.705,-28.2968,0	1/1:84:0,84:0:0:84:3017:-271.756,-25.2865,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:58:9,49:9:324:49:1752:-140.504,0,-12.0461	0/1:38:9,29:9:320:29:1036:-82.1148,0,-17.7032	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:99:44,55:44:1576:55:1980:-148.672,0,-112.33	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	.:.:.:.:.:.:.:.	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:57:0,57:0:0:57:2037:-183.6,-17.1587,0	1/1:129:0,129:0:0:129:4640:-417.76,-38.8329,0	.:.:.:.:.:.:.:.	0/1:147:83,64:83:2939:64:2296:-162.65,0,-220.489	1/1:105:0,105:0:0:105:3772:-339.678,-31.6082,0	1/1:93:0,93:0:0:93:3333:-300.185,-27.9958,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:102:2,100:2:68:100:3599:-317.657,-24.2474,0	0/1:53:17,36:17:608:36:1292:-100.629,0,-39.0974	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:75:1,74:1:36:74:2656:-235.687,-18.979,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:145:0,145:0:0:145:5216:-469.575,-43.6494,0	0/1:44:17,27:17:612:27:964:-73.8315,0,-42.1681	1/1:95:0,95:0:0:95:3374:-303.874,-28.5979,0	1/1:154:0,154:0:0:154:5519:-496.835,-46.3586,0	1/1:39:1,38:1:36:38:1349:-118.11,-8.1419,0	1/1:102:0,102:0:0:102:3668:-330.322,-30.7051,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:60:0,60:0:0:60:2141:-192.956,-18.0618,0	0/1:46:11,35:11:396:35:1245:-98.5053,0,-22.1354	1/1:127:0,127:0:0:127:4555:-410.115,-38.2308,0	1/1:68:0,68:0:0:68:2437:-219.569,-20.47,0	1/1:86:0,86:0:0:86:3080:-277.159,-25.8886,0	0/1:69:33,36:33:1171:36:1296:-96.1729,0,-84.9256	1/1:133:0,133:0:0:133:4780:-430.355,-40.037,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:65:38,27:38:1368:27:968:-67.8704,0,-103.854	1/1:76:0,76:0:0:76:2715:-244.592,-22.8783,0	0/1:59:23,36:23:828:36:1292:-98.823,0,-57.0833	0/1:131:61,70:61:2164:70:2512:-186.897,0,-155.59	0/1:60:35,25:35:1245:25:881:-61.5441,0,-94.2909	1/1:109:0,109:0:0:109:3890:-350.291,-32.8123,0	1/1:94:0,94:0:0:94:3369:-303.424,-28.2968,0
chr08	6646008	.	T	A	11005.3	PASS	AB=0.377978;ABP=247.311;AC=35;AF=0.190217;AN=184;AO=759;CIGAR=1X;DP=6508;DPB=6508;DPRA=0.993964;EPP=1651.16;EPPR=12486.8;GTI=6;LEN=1;MEANALT=1;MQM=59.9802;MQMR=59.9776;NS=92;NUMALT=1;ODDS=0.105149;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27169;QR=206150;RO=5749;RPL=736;RPP=1457.44;RPPR=11835.4;RPR=23;RUN=1;SAF=23;SAP=1457.44;SAR=736;SRF=76;SRP=11835.4;SRR=5673;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.383	0/1:108:83,25:83:2957:25:900:-48.8098,0,-233.851	0/0:179:179,0:179:6420:0:0:0,-53.8844,-577.884	0/0:15:14,1:14:500:1:36:0,-0.917175,-41.7379	0/1:26:17,9:17:608:9:320:-21.3156,0,-47.2252	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/0:115:114,1:114:4087:1:36:0,-31.0202,-364.416	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.346	0/0:97:96,1:96:3448:1:36:0,-25.6016,-306.864	0/0:91:91,0:91:3276:0:0:0,-27.3937,-295.059	0/0:115:115,0:115:4140:0:0:0,-34.6184,-372.781	0/0:79:74,5:74:2664:5:180:0,-7.2293,-223.453	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.482	0/0:54:51,3:51:1832:3:108:0,-6.18045,-155.085	0/0:63:60,3:60:2152:3:108:0,-8.88972,-183.872	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.592	0/0:140:140,0:140:5028:0:0:0,-42.1442,-452.664	0/1:32:23,9:23:824:9:324:-19.8729,0,-64.8504	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/1:37:32,5:32:1148:5:180:-5.41396,0,-92.4917	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:126:85,41:85:3040:41:1468:-94.4863,0,-235.877	0/1:113:83,30:83:2980:30:1076:-63.1365,0,-234.415	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:166:166,0:166:5941:0:0:0,-49.971,-534.796	0/0:76:75,1:75:2681:1:36:0,-19.28,-237.935	0/1:39:25,14:25:896:14:504:-33.9579,0,-69.2202	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:213:210,3:210:7544:3:108:0,-54.0442,-668.922	0/1:55:44,11:44:1580:11:396:-19.4261,0,-125.935	0/1:44:30,14:30:1080:14:500:-32.0909,0,-84.2679	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:65:33,32:33:1180:32:1148:-84.0629,0,-86.9411	0/1:36:21,15:21:756:15:540:-38.0995,0,-57.5301	0/1:48:37,11:37:1328:11:388:-20.7893,0,-105.373	0/1:78:30,48:30:1076:48:1720:-131.605,0,-73.6725	0/0:54:53,1:53:1904:1:36:0,-12.6573,-168.039	0/1:58:46,12:46:1640:12:413:-20.0381,0,-130.429	0/1:51:33,18:33:1184:18:636:-42.2155,0,-91.5158	0/1:63:38,25:38:1360:25:900:-62.3561,0,-103.736	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:95:92,3:92:3297:3:104:0,-18.895,-287.244	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.073	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:57:47,10:47:1692:10:360:-15.5856,0,-135.408	0/1:39:30,9:30:1076:9:324:-17.7657,0,-85.4127	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:100:54,46:54:1944:46:1644:-118.146,0,-145.133	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	.:.:.:.:.:.:.:.	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.839	0/0:134:133,1:133:4784:1:36:0,-36.7397,-427.116	.:.:.:.:.:.:.:.	0/1:153:69,84:69:2480:84:2996:-223.815,0,-177.395	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:99:96,3:96:3456:3:104:0,-20.0992,-301.548	0/1:53:34,19:34:1224:19:680:-45.5746,0,-94.5125	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.24	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:77:75,2:75:2696:2:72:0,-16.3426,-236.047	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:139:138,1:138:4960:1:36:0,-38.2449,-442.949	0/1:43:27,16:27:972:16:568:-38.5076,0,-74.8536	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:150:149,1:149:5329:1:36:0,-41.5562,-476.144	0/0:39:38,1:38:1368:1:36:0,-8.14189,-119.823	0/0:99:95,4:95:3386:4:144:0,-16.4884,-291.639	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:45:34,11:34:1224:11:396:-22.4364,0,-96.9207	0/0:130:129,1:129:4601:1:36:0,-35.5356,-409.637	0/0:71:69,2:69:2453:2:72:0,-14.5364,-214.116	0/0:86:84,2:84:3005:2:72:0,-19.0519,-263.843	0/1:67:35,32:35:1260:32:1140:-82.7402,0,-93.5365	0/0:137:137,0:137:4924:0:0:0,-41.2411,-443.308	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:72:32,40:32:1152:40:1440:-108.224,0,-82.316	0/0:78:77,1:77:2749:1:36:0,-19.8821,-244.052	0/1:60:37,23:37:1309:23:824:-56.4215,0,-100.048	0/1:129:69,60:69:2484:60:2156:-155.474,0,-184.98	0/1:56:25,31:25:896:31:1112:-83.5337,0,-64.1027	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/0:98:96,2:96:3452:2:72:0,-22.6642,-304.055
chr08	6732762	.	A	G	83041.6	PASS	AB=0.378609;ABP=1909.35;AC=96;AF=0.510638;AN=188;AO=5646;CIGAR=1X;DP=14901;DPB=14901;DPRA=0;EPP=12263.1;EPPR=20078.3;GTI=2;LEN=1;MEANALT=1.10638;MQM=59.6463;MQMR=59.9454;NS=94;NUMALT=1;ODDS=64.5701;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201649;QR=331392;RO=9245;RPL=0;RPP=12263.1;RPPR=20078.3;RPR=5646;RUN=1;SAF=5646;SAP=12263.1;SAR=0;SRF=9245;SRP=20078.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:57,14:57:2014:14:496:-23.5847,0,-160.156	0/1:232:152,80:152:5441:80:2857:-187.086,0,-419.978	0/1:169:125,43:125:4492:43:1529:-86.9602,0,-353.514	0/1:383:306,77:306:10976:77:2757:-132.444,0,-872.438	0/1:113:62,51:62:2216:51:1817:-129.779,0,-165.688	0/1:135:92,43:92:3300:43:1540:-98.254,0,-255.643	0/1:303:182,120:182:6532:120:4252:-291.568,0,-496.69	0/1:258:109,149:109:3920:149:5340:-402.813,0,-275.325	0/1:153:68,85:68:2436:85:3015:-225.496,0,-173.299	0/1:118:63,54:63:2264:54:1944:-139.556,0,-168.414	0/1:71:42,29:42:1508:29:1044:-72.9017,0,-114.641	0/1:141:60,81:60:2160:81:2885:-217.408,0,-152.221	0/1:116:64,52:64:2304:52:1838:-130.768,0,-172.701	0/1:115:60,55:60:2156:55:1980:-143.842,0,-159.688	0/1:116:64,52:64:2300:52:1868:-133.417,0,-172.341	0/1:99:66,32:66:2376:32:1152:-74.1156,0,-184.237	0/1:111:56,55:56:2016:55:1953:-142.412,0,-148.299	0/1:78:42,36:42:1512:36:1292:-93.0953,0,-112.894	0/1:48:18,30:18:648:30:1076:-82.7034,0,-44.2024	0/1:372:234,138:234:8350:138:4922:-330.946,0,-639.518	0/1:220:86,134:86:3069:134:4797:-365.379,0,-210.211	0/1:197:164,32:164:5892:32:1148:-44.2761,0,-471.065	0/1:163:87,76:87:3128:76:2717:-195.683,0,-232.677	0/1:221:155,66:155:5533:66:2372:-147.088,0,-431.441	0/1:103:47,56:47:1688:56:2012:-150.337,0,-121.201	0/1:589:463,126:463:16612:126:4501:-227.935,0,-1317.41	0/1:351:273,78:273:9761:78:2800:-146.439,0,-772.132	0/1:58:31,27:31:1112:27:972:-70.3289,0,-82.9316	0/1:388:292,96:292:10450:96:3428:-191.932,0,-823.601	0/1:202:98,104:98:3509:104:3736:-275.605,0,-255.124	0/1:222:178,44:178:6384:44:1584:-76.0182,0,-507.819	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:367:193,174:193:6902:174:6244:-451.511,0,-510.743	0/1:256:174,82:174:6245:82:2929:-186.77,0,-485.064	0/1:113:80,33:80:2876:33:1169:-71.4989,0,-225.052	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/1:300:254,46:254:9136:46:1648:-58.2885,0,-731.898	0/1:52:43,9:43:1548:9:320:-13.4888,0,-123.96	0/1:159:83,76:83:2984:76:2732:-198.252,0,-220.927	0/1:140:72,68:72:2573:68:2395:-173.647,0,-189.673	0/1:112:63,49:63:2249:49:1760:-124.966,0,-168.956	0/1:188:151,37:151:5420:37:1328:-63.2277,0,-431.326	0/1:241:177,64:177:6356:64:2277:-132.595,0,-499.485	0/1:254:178,76:178:6388:76:2721:-168.564,0,-498.545	0/1:256:125,131:125:4476:131:4666:-342.264,0,-325.946	0/1:151:84,67:84:3004:67:2394:-170.202,0,-225.136	0/1:343:178,164:178:6388:164:5865:-424.638,0,-471.695	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:179:141,38:141:5053:38:1364:-69.1322,0,-401.028	0/1:137:40,97:40:1436:97:3461:-270.313,0,-88.2966	0/1:26:17,9:17:612:9:324:-21.6791,0,-47.5867	0/1:220:172,48:172:6176:48:1728:-89.5695,0,-489.709	0/1:107:78,29:78:2796:29:1029:-60.6972,0,-219.67	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:21:12,9:12:432:9:324:-23.1833,0,-32.8996	0/1:100:51,49:51:1832:49:1760:-128.574,0,-135.058	0/1:217:105,112:105:3749:112:4020:-296.64,0,-272.286	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:188:148,40:148:5320:40:1432:-72.584,0,-422.338	0/1:340:177,162:177:6341:162:5805:-420.084,0,-468.519	0/1:119:41,78:41:1472:78:2766:-213.338,0,-96.8238	0/1:127:65,62:65:2336:62:2213:-161.201,0,-172.268	0/1:272:160,112:160:5748:112:4018:-279.891,0,-435.553	0/1:196:149,47:149:5337:47:1688:-93.2051,0,-421.458	0/1:38:19,19:19:684:19:684:-50.4466,0,-50.4512	0/1:120:72,48:72:2569:48:1713:-118.307,0,-194.907	0/1:133:63,70:63:2253:70:2506:-185.742,0,-162.504	0/1:33:14,19:14:489:19:680:-51.5952,0,-34.4049	0/1:248:132,116:132:4729:116:4147:-298.671,0,-351.111	0/1:104:82,22:82:2899:22:788:-39.9295,0,-229.729	0/1:336:162,174:162:5805:174:6191:-456.131,0,-421.413	0/1:244:145,99:145:5173:99:3537:-245.084,0,-392.259	0/1:117:52,65:52:1864:65:2291:-171.193,0,-132.811	0/1:112:50,62:50:1785:62:2207:-165.083,0,-127.215	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:111:51,60:51:1813:60:2107:-156.475,0,-130.035	0/1:126:104,22:104:3721:22:784:-32.9378,0,-297.104	0/1:378:175,202:175:6276:202:7127:-526.475,0,-451.075	0/1:182:144,38:144:5172:38:1364:-68.257,0,-410.828	0/1:114:63,50:63:2268:50:1773:-125.468,0,-170.006	0/1:166:123,43:123:4424:43:1536:-88.4294,0,-348.3	0/1:271:119,152:119:4280:152:5400:-404.501,0,-303.795	0/1:75:39,36:39:1389:36:1292:-94.0065,0,-102.73	0/1:127:99,28:99:3564:28:989:-51.0912,0,-282.735	0/1:133:68,65:68:2429:65:2332:-170.068,0,-178.827	0/1:69:54,15:54:1936:15:540:-28.1655,0,-153.745	0/1:165:136,29:136:4861:29:1040:-44.2444,0,-387.954	0/1:171:152,18:152:5445:18:648:-7.07636,0,-438.641	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:165:81,84:81:2916:84:3016:-221.991,0,-213.004
chr08	6732781	.	GTT	ATC,GTC	295326	PASS	AB=0.48011,0.515798;ABP=54.2343,35.3254;AC=97,91;AF=0.515957,0.484043;AN=188;AO=7167,7689;CIGAR=1X1M1X,2M1X;DP=14917;DPB=14917.3;DPRA=0,49.144;EPP=15384.1,16491.7;EPPR=7.35324;GTI=1;LEN=3,1;MEANALT=2.53191,2.58242;MQM=59.6806,59.9677;MQMR=60;NS=94;NUMALT=2;ODDS=1.08346;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=1;QA=252026,273677;QR=72;RO=2;RPL=21,24;RPP=15384.1,16491.7;RPPR=7.35324;RPR=7146,7665;RUN=1,1;SAF=7167,7689;SAP=15566,16699.5;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:72:0,35,37:0:0:35,37:1201,1295:-203.21,-105.712,-95.1761,-97.8441,0,-86.706	1/2:230:0,80,150:0:0:80,150:2813,5343:-664.605,-435.85,-411.768,-229.108,0,-183.953	1/2:168:0,87,81:0:0:87,81:3047,2867:-481.795,-233.884,-207.695,-248.262,0,-223.879	1/2:380:0,153,226:0:0:153,226:5372,8027:-1091.27,-654.063,-608.006,-437.195,0,-369.162	1/2:113:0,74,38:0:0:74,38:2604,1360:-322.87,-110.902,-88.626,-211.964,0,-200.525	1/2:134:0,77,57:0:0:77,57:2727,2033:-388.114,-166.083,-142.903,-222.387,0,-205.228	1/2:301:0,118,182:0:0:118,182:4105,6439:-858.284,-524.536,-489.014,-333.818,0,-279.03	1/2:256:0,150,105:0:0:150,105:5268,3733:-732.521,-303.805,-258.651,-428.801,0,-397.193	1/2:154:0,81,72:0:0:81,72:2834,2522:-435.723,-205.177,-180.793,-230.537,0,-208.863	1/2:121:0,55,64:0:0:55,64:1911,2292:-342.257,-186.926,-170.369,-155.362,0,-136.096	1/2:71:0,29,42:0:0:29,42:1037,1496:-206.849,-122.291,-113.561,-84.9144,0,-72.2712	1/2:142:0,82,59:0:0:82,59:2917,2080:-406.926,-169.348,-144.663,-237.572,0,-219.811	1/2:116:0,53,63:0:0:53,63:1887,2246:-337.225,-183.437,-167.483,-154.144,0,-135.179	1/2:116:0,56,59:0:0:56,59:1971,2108:-332.313,-171.869,-155.011,-160.439,0,-142.678	1/2:119:0,55,63:0:0:55,63:1932,2244:-340.1,-182.899,-166.343,-157.195,0,-138.23	1/2:99:0,29,68:0:0:29,68:1016,2400:-278.095,-195.427,-186.697,-82.6599,0,-62.1899	1/2:111:0,55,56:0:0:55,56:1962,2007:-323.763,-164.045,-147.488,-160.076,0,-143.218	1/2:78:0,36,42:0:0:36,42:1279,1512:-227.942,-123.731,-112.894,-104.568,0,-91.9245	1/2:48:0,30,18:0:0:30,18:1057,648:-139.285,-53.2333,-44.2024,-86.4088,0,-80.9903	1/2:372:0,139,233:0:0:139,233:4888,8331:-1077.38,-679.653,-637.81,-398.077,0,-327.937	1/2:222:0,138,83:0:0:138,83:4798,2936:-629.208,-239.13,-197.588,-390.07,0,-365.084	1/2:192:1,97,93:1:36:97,93:3383,3297:-540.517,-265.696,-239.433,-272.215,0,-247.157	1/2:162:0,76,85:0:0:76,85:2666,3039:-464.825,-247.882,-225.003,-217.026,0,-191.438	1/2:225:0,115,110:0:0:115,110:3984,3923:-643.789,-320.15,-285.532,-323.99,0,-290.877	1/2:103:0,57,46:0:0:57,46:2013,1623:-296.436,-132.511,-115.352,-164.278,0,-150.431	1/2:594:0,281,311:0:0:281,311:9895,11093:-1709.85,-904.34,-819.751,-805.556,0,-711.935	1/2:346:0,154,190:0:0:154,190:5451,6747:-993.501,-549.638,-503.279,-443.932,0,-386.736	1/2:57:0,27,30:0:0:27,30:950,1076:-165.451,-88.122,-79.9941,-77.6835,0,-68.6526	1/2:388:0,96,290:0:0:96,290:3396,10333:-1118.86,-842.259,-813.36,-276.629,0,-189.33	1/2:207:0,105,102:0:0:105,102:3727,3611:-598.137,-294.484,-262.876,-304.008,0,-273.303	1/2:223:0,89,134:0:0:89,134:3125,4744:-641.106,-386.783,-359.992,-254.675,0,-214.337	1/2:4:0,2,2:0:0:2,2:61,72:-11.0935,-6.23466,-5.6326,-5.19117,0,-4.58911	1/2:9:0,3,6:0:0:3,6:106,216:-26.6149,-17.9843,-17.0812,-8.98601,0,-7.17983	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:7:0,1,6:0:0:1,6:36,212:-20.557,-17.6186,-17.3176,-3.29724,0,-1.49106	1/2:6:0,3,3:0:0:3,3:108,104:-17.6186,-8.79971,-7.89662,-9.17208,0,-8.26899	1/2:367:0,174,191:0:0:174,191:6182,6794:-1057.43,-553.716,-501.337,-503.747,0,-446.25	1/2:258:0,154,101:0:0:154,101:5355,3598:-728.697,-293.324,-246.966,-435.427,0,-405.023	1/2:113:0,66,45:0:0:66,45:2304,1608:-318.579,-131.181,-111.313,-187.468,0,-173.922	1/1:3:0,3,0:0:0:3,0:95,0:-8.86429,-0.90309,0,-8.86429,-0.90309,-8.86429	1/2:300:0,101,197:0:0:101,197:3542,7039:-862.158,-573.935,-543.531,-288.241,0,-228.938	1/2:51:0,19,32:0:0:19,32:671,1137:-147.647,-93.004,-87.2844,-54.9966,0,-45.3636	1/2:158:0,77,80:0:0:77,80:2716,2868:-455.063,-233.915,-210.735,-221.144,0,-197.062	1/2:140:0,68,72:0:0:68,72:2417,2575:-407.273,-210.32,-189.85,-197.31,0,-175.635	1/2:113:0,50,63:0:0:50,63:1747,2249:-325.816,-183.708,-168.656,-142.46,0,-123.496	1/2:188:0,85,103:0:0:85,103:2979,3662:-541.181,-298.779,-273.191,-242.755,0,-211.749	1/2:241:0,129,112:0:0:129,112:4519,4004:-694.265,-326.645,-287.812,-367.974,0,-334.259	1/2:249:0,126,123:0:0:126,123:4441,4386:-719.407,-357.887,-319.957,-361.875,0,-324.848	1/2:255:1,132,122:1:36:132,122:4636,4355:-728.495,-352.102,-315.304,-373.75,0,-339.962	1/2:152:0,68,84:0:0:68,84:2396,3004:-440.357,-245.305,-224.835,-195.406,0,-170.12	1/2:346:0,165,177:0:0:165,177:5876,6264:-989.237,-510.317,-460.647,-479.01,0,-425.728	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:178:0,70,107:0:0:70,107:2486,3811:-513.268,-310.747,-289.675,-202.644,0,-170.434	1/2:137:0,98,39:0:0:98,39:3455,1392:-395.022,-113.839,-84.3379,-281.539,0,-269.799	1/2:24:0,12,12:0:0:12,12:428,432:-70.4973,-35.6088,-31.9965,-35.2467,0,-31.6343	1/2:220:0,99,121:0:0:99,121:3453,4310:-632.319,-351.653,-321.851,-281.018,0,-244.593	1/2:111:0,56,55:0:0:56,55:1948,1968:-319.206,-160.838,-143.981,-158.72,0,-142.163	1/2:12:0,7,5:0:0:7,5:244,180:-34.8835,-15.0469,-12.9397,-20.1916,0,-18.6865	1/2:21:0,9,12:0:0:9,12:301,428:-59.6055,-35.2464,-32.5372,-24.7029,0,-21.0905	1/2:100:0,48,51:0:0:48,51:1698,1807:-285.58,-147.287,-132.837,-138.375,0,-123.022	1/2:216:0,112,101:0:0:112,101:3993,3586:-617.662,-292.194,-258.479,-325.474,0,-295.07	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:187:0,87,100:0:0:87,100:3073,3567:-541.391,-291.135,-264.946,-250.61,0,-220.507	1/2:341:0,165,175:0:0:165,175:5806,6221:-979.624,-507.029,-457.359,-472.668,0,-419.988	1/2:117:0,78,39:0:0:78,39:2754,1371:-336.121,-111.946,-88.4659,-224.527,0,-212.786	1/2:129:0,63,66:0:0:63,66:2199,2368:-372.365,-193.51,-174.545,-179.209,0,-159.341	1/2:272:0,113,158:0:0:113,158:3999,5630:-784.588,-458.902,-424.886,-325.681,0,-278.118	1/2:198:0,125,73:0:0:125,73:4396,2615:-571.449,-213.622,-175.993,-358.183,0,-336.208	1/2:38:0,19,19:0:0:19,19:666,680:-109.995,-55.8096,-50.09,-54.5399,0,-48.8203	1/2:119:0,48,71:0:0:48,71:1713,2511:-344.482,-204.843,-190.394,-139.994,0,-118.621	1/2:135:0,71,63:0:0:71,63:2464,2255:-384.209,-183.942,-162.569,-200.313,0,-181.348	1/2:33:0,19,14:0:0:19,14:661,491:-94.0488,-40.3067,-34.5871,-54.0915,0,-49.8771	1/2:252:0,119,131:0:0:119,131:4175,4631:-716.899,-377.206,-341.384,-339.729,0,-300.294	1/2:99:0,57,42:0:0:57,42:1968,1504:-282.878,-123.011,-105.853,-160.219,0,-147.576	1/2:340:0,179,160:0:0:179,160:6238,5708:-972.592,-465.313,-411.429,-507.272,0,-459.107	1/2:247:0,100,146:0:0:100,146:3546,5198:-712.534,-423.651,-393.548,-288.878,0,-244.928	1/2:117:0,65,52:0:0:65,52:2291,1852:-337.798,-151.298,-131.731,-186.854,0,-171.2	1/2:113:0,62,51:0:0:62,51:2154,1807:-322.651,-147.558,-128.895,-175.444,0,-160.091	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/2:110:0,59,51:0:0:59,51:2030,1820:-313.581,-148.729,-130.968,-165.203,0,-149.851	1/2:127:0,64,61:0:0:64,61:2193,2162:-354.15,-176.167,-156.901,-178.015,0,-159.652	1/2:378:0,206,171:0:0:206,171:7226,6062:-1081.5,-493.9,-431.888,-587.642,0,-536.166	1/2:183:0,89,94:0:0:89,94:3135,3338:-527.561,-272.341,-245.55,-255.573,0,-227.276	1/2:115:0,52,63:0:0:52,63:1846,2260:-335.103,-184.698,-169.044,-150.762,0,-131.797	1/2:166:0,85,81:0:0:85,81:3015,2892:-481.658,-236.133,-210.546,-245.88,0,-221.497	1/2:271:0,152,118:0:0:152,118:5363,4199:-778.859,-342.21,-296.454,-436.643,0,-401.122	1/2:76:0,36,40:0:0:36,40:1270,1392:-216.948,-113.533,-102.696,-103.765,0,-91.7239	1/2:128:0,56,70:0:0:56,70:1974,2507:-365.244,-204.523,-187.665,-160.788,0,-139.716	1/2:133:0,65,68:0:0:65,68:2304,2423:-385.525,-197.856,-178.289,-188.024,0,-167.554	1/2:70:0,34,33:0:0:34,33:1206,1188:-195.229,-96.9744,-86.7394,-98.2903,0,-88.3563	1/2:162:0,66,93:0:0:66,93:2340,3316:-460.938,-270.303,-250.435,-190.631,0,-162.635	1/2:172:0,92,80:0:0:92,80:3236,2872:-498.007,-234.634,-206.939,-263.729,0,-239.646	1/2:9:0,1,8:0:0:1,8:34,284:-26.2514,-23.4951,-23.1941,-3.09788,0,-0.689641	1/2:165:0,83,82:0:0:83,82:2946,2907:-477.142,-237.182,-212.197,-240.314,0,-215.629
chr08	6732789	.	T	C	128743	PASS	AB=0.427303;ABP=680.228;AC=90;AF=0.478723;AN=188;AO=6304;CIGAR=1X;DP=14765;DPB=14765;DPRA=54.6407;EPP=3994.34;EPPR=4998.89;GTI=3;LEN=1;MEANALT=1.03333;MQM=59.9648;MQMR=59.7251;NS=94;NUMALT=1;ODDS=3.9186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224126;QR=301928;RO=8457;RPL=1446;RPP=4013.12;RPPR=5035.2;RPR=4858;RUN=1;SAF=6300;SAP=13657.3;SAR=4;SRF=8449;SRP=18297.7;SRR=8;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:35,37:35:1243:37:1302:-95.8056,0,-90.4883	0/1:230:79,151:79:2832:151:5384:-415.456,0,-185.441	0/1:168:127,41:127:4534:41:1464:-81.483,0,-357.646	0/1:377:153,224:153:5468:224:7983:-605.008,0,-378.127	0/1:118:95,23:95:3379:23:824:-38.9618,0,-268.792	0/1:137:97,40:97:3455:40:1424:-87.2164,0,-268.986	0/1:294:117,177:117:4155:177:6290:-477.695,0,-285.615	0/1:254:147,107:147:5254:107:3770:-262.265,0,-396.278	0/1:154:86,68:86:3080:68:2392:-169.158,0,-231.045	0/1:120:56,64:56:1995:64:2289:-170.145,0,-143.686	0/1:69:28,41:28:1008:41:1457:-110.654,0,-70.2653	0/1:141:82,59:82:2916:59:2060:-143.224,0,-220.016	0/1:116:53,63:53:1895:63:2247:-167.574,0,-135.899	0/1:114:54,60:54:1923:60:2132:-157.831,0,-139.015	0/1:118:54,64:54:1923:64:2283:-170.21,0,-137.796	0/1:99:29,70:29:1018:70:2495:-195.001,0,-62.1267	0/1:110:55,55:55:1963:55:1972:-144.642,0,-143.609	0/1:77:37,40:37:1328:40:1428:-105.638,0,-96.6348	0/1:48:30,18:30:1076:18:648:-44.2024,0,-82.7034	0/1:371:137,234:137:4916:234:8331:-638.121,0,-330.692	0/1:220:137,83:137:4912:83:2958:-200.228,0,-375.668	0/1:193:159,34:159:5662:34:1202:-50.3854,0,-451.602	0/1:161:77,84:77:2742:84:2985:-220.416,0,-198.54	0/1:224:156,68:156:5583:68:2413:-149.995,0,-434.907	0/1:103:57,46:57:2044:46:1632:-116.163,0,-153.216	0/1:584:428,156:428:15305:156:5571:-325.713,0,-1201.3	0/1:341:248,93:248:8858:93:3304:-194.927,0,-694.037	0/1:58:27,31:27:955:31:1092:-81.1298,0,-68.7959	0/1:388:93,295:93:3324:295:10490:-827.209,0,-182.576	0/1:206:105,101:105:3776:101:3616:-263.597,0,-277.999	0/1:218:140,78:140:4981:78:2737:-180.949,0,-382.787	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:1,6:1:36:6:201:-16.3098,0,-1.49106	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:365:175,188:175:6254:188:6685:-492.084,0,-453.202	0/1:254:206,48:206:7345:48:1706:-77.364,0,-584.633	0/1:113:89,24:89:3179:24:856:-43.3365,0,-252.318	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:299:174,125:174:6209:125:4444:-310.123,0,-468.886	0/1:53:36,17:36:1279:17:612:-39.4588,0,-99.4579	0/1:160:117,43:117:4184:43:1537:-90.4562,0,-328.571	0/1:139:100,39:100:3592:39:1404:-84.8115,0,-281.631	0/1:110:51,59:51:1814:59:2112:-157.236,0,-130.424	0/1:185:132,53:132:4718:53:1874:-113.247,0,-369.087	0/1:238:179,59:179:6391:59:2077:-115.543,0,-503.555	0/1:249:186,63:186:6666:63:2234:-126.367,0,-525.043	0/1:249:127,122:127:4532:122:4344:-316.179,0,-332.631	0/1:150:66,84:66:2372:84:2987:-223.908,0,-168.558	0/1:341:166,175:166:5948:175:6215:-456.8,0,-432.711	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:176:122,54:122:4359:54:1920:-120.095,0,-339.459	0/1:134:108,26:108:3859:26:928:-43.5002,0,-307.076	0/1:26:19,7:19:680:7:248:-14.8374,0,-53.7024	0/1:219:157,62:157:5577:62:2200:-132.338,0,-436.085	0/1:110:76,34:76:2702:34:1196:-74.8321,0,-210.252	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:21:10,11:10:356:11:392:-29.2984,0,-26.0587	0/1:100:48,52:48:1711:52:1862:-137.757,0,-124.167	0/1:216:112,104:112:3979:104:3709:-268.988,0,-293.256	0/0:4:4,0:4:131:0:0:0,-1.20412,-12.1135	0/1:185:131,54:131:4690:54:1936:-118.826,0,-366.568	0/1:342:163,179:163:5815:179:6350:-468.642,0,-420.37	0/1:115:76,38:76:2724:38:1339:-86.249,0,-210.699	0/1:127:61,66:61:2164:66:2351:-173.619,0,-156.795	0/1:270:112,158:112:4015:158:5623:-424.917,0,-280.146	0/1:192:170,22:170:6083:22:771:-11.9125,0,-489.756	0/1:37:19,18:19:680:18:644:-47.1525,0,-50.3864	0/1:120:49,71:49:1730:71:2485:-187.754,0,-119.836	0/1:130:69,61:69:2472:61:2158:-155.35,0,-183.108	0/1:33:19,14:19:680:14:504:-35.7641,0,-51.5952	0/1:242:113,129:113:4040:129:4590:-340.418,0,-290.845	0/1:97:79,18:79:2815:18:631:-27.9158,0,-224.276	0/1:332:173,159:173:6199:159:5662:-409.756,0,-458.038	0/1:244:98,146:98:3495:146:5194:-394.15,0,-241.304	0/1:112:62,50:62:2219:50:1753:-124.335,0,-166.218	0/1:111:62,49:62:2224:49:1744:-123.83,0,-166.906	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:111:59,52:59:2086:52:1844:-132.826,0,-154.585	0/1:122:82,40:82:2910:40:1432:-92.4519,0,-225.343	0/1:374:204,170:204:7274:170:6026:-429.864,0,-541.483	0/1:178:85,93:85:3022:93:3336:-246.874,0,-218.611	0/1:113:51,62:51:1810:62:2228:-166.767,0,-129.157	0/1:160:125,35:125:4457:35:1256:-65.1805,0,-352.947	0/1:267:150,117:150:5333:117:4154:-293.666,0,-399.681	0/1:76:36,40:36:1296:40:1419:-105.128,0,-94.0657	0/1:122:88,34:88:3120:34:1207:-72.2096,0,-244.301	0/1:131:64,66:64:2277:66:2352:-172.564,0,-165.793	0/1:69:53,16:53:1895:16:576:-31.4039,0,-150.056	0/1:161:107,54:107:3816:54:1895:-122.354,0,-295.156	0/1:173:147,26:147:5262:26:932:-32.1207,0,-421.59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chr08	6732807	.	A	G	118664	PASS	AB=0.492109;ABP=10.721;AC=97;AF=0.515957;AN=188;AO=7026;CIGAR=1X;DP=14267;DPB=14267;DPRA=0;EPP=15147.1;EPPR=15715.8;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.7139;MQMR=59.9737;NS=94;NUMALT=1;ODDS=2.11817;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250032;QR=256066;RO=7236;RPL=7006;RPP=15086.6;RPPR=15672.4;RPR=20;RUN=1;SAF=7019;SAP=15199;SAR=7;SRF=7231;SRP=15672.4;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:33,32:33:1165:32:1125:-81.9809,0,-85.5881	0/1:215:138,77:138:4927:77:2717:-179.927,0,-378.86	0/1:165:78,87:78:2784:87:3073:-227.119,0,-201.131	0/1:365:214,151:214:7561:151:5372:-373.733,0,-570.658	0/1:115:36,79:36:1280:79:2790:-216.708,0,-80.8848	0/1:130:54,76:54:1913:76:2714:-205.369,0,-133.312	0/1:291:173,118:173:6149:118:4211:-291.553,0,-465.911	0/1:243:93,150:93:3305:150:5328:-406.435,0,-224.028	0/1:148:64,84:64:2277:84:2986:-224.395,0,-160.63	0/1:111:56,55:56:1988:55:1961:-143.333,0,-145.78	0/1:66:37,29:37:1324:29:1044:-74.4068,0,-99.5941	0/1:137:58,79:58:2080:79:2825:-213.204,0,-146.229	0/1:108:56,52:56:1972:52:1848:-134.08,0,-145.241	0/1:111:56,55:56:1976:55:1951:-142.444,0,-144.698	0/1:114:63,51:63:2252:51:1803:-128.226,0,-168.626	0/1:94:66,28:66:2360:28:996:-61.6581,0,-184.362	0/1:108:53,55:53:1888:55:1960:-143.942,0,-137.687	0/1:76:40,36:40:1402:36:1288:-93.3371,0,-103.595	0/1:46:18,28:18:621:28:1008:-77.189,0,-42.3638	0/1:354:216,138:216:7644:138:4933:-337.439,0,-581.439	0/1:213:80,133:80:2821:133:4730:-361.722,0,-190.008	0/1:193:96,97:96:3379:97:3456:-253.139,0,-246.226	0/1:146:71,75:71:2480:75:2667:-196.311,0,-179.501	0/1:213:101,112:101:3584:112:3955:-291.836,0,-258.648	0/1:99:44,55:44:1549:55:1967:-147.493,0,-109.898	0/1:559:284,275:284:10021:275:9801:-713.702,0,-733.546	0/1:328:179,149:179:6364:149:5273:-375.948,0,-473.489	0/1:53:28,25:28:1000:25:891:-64.545,0,-74.3608	0/1:373:276,96:276:9755:96:3435:-197.017,0,-765.563	0/1:189:89,100:89:3143:100:3571:-264.685,0,-226.112	0/1:209:123,86:123:4332:86:3080:-214.508,0,-327.14	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:8:5,3:5:172:3:108:-7.66693,0,-13.4097	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:6:3,3:3:93:3:108:-8.26899,0,-6.87055	0/1:358:185,173:185:6555:173:6152:-445.95,0,-482.269	0/1:246:96,150:96:3404:150:5303:-403.341,0,-232.524	0/1:108:43,65:43:1519:65:2336:-177.988,0,-104.491	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:286:182,103:182:6427:103:3675:-244.789,0,-492.368	0/1:50:32,18:32:1148:18:635:-42.4255,0,-88.5783	0/1:151:75,76:75:2642:76:2711:-198.774,0,-192.569	0/1:138:71,67:71:2520:67:2387:-173.538,0,-185.506	0/1:109:61,48:61:2110:48:1690:-119.573,0,-157.355	0/1:179:96,83:96:3412:83:2955:-212.295,0,-253.409	0/1:231:105,126:105:3675:126:4520:-337.345,0,-261.225	0/1:247:123,124:123:4346:124:4382:-320.148,0,-316.963	0/1:250:125,125:125:4415:125:4471:-326.59,0,-322.265	0/1:144:79,65:79:2804:65:2312:-164.99,0,-209.25	0/1:337:170,166:170:6072:166:5939:-433.093,0,-445.078	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:173:105,68:105:3708:68:2428:-166.654,0,-281.846	0/1:129:36,93:36:1276:93:3329:-260.85,0,-76.3102	0/1:25:13,12:13:464:12:432:-31.6954,0,-34.5718	0/1:215:119,96:119:4183:96:3422:-243.464,0,-311.933	0/1:106:51,55:51:1801:55:1949:-143.716,0,-130.461	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:20:11,9:11:384:9:310:-22.2125,0,-28.8741	0/1:92:44,48:44:1576:48:1699:-125.494,0,-114.437	0/1:206:95,111:95:3383:111:3951:-293.748,0,-242.674	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:180:97,83:97:3460:83:2976:-213.882,0,-257.428	0/1:328:169,159:169:6015:159:5664:-411.104,0,-442.721	0/1:111:36,75:36:1262:75:2670:-207.124,0,-80.4666	0/1:120:60,60:60:2140:60:2132:-156.022,0,-156.744	0/1:257:145,112:145:5103:112:4019:-284.419,0,-382.053	0/1:190:67,123:67:2396:123:4363:-335.63,0,-158.701	0/1:37:19,18:19:663:18:648:-47.5092,0,-48.8553	0/1:116:69,47:69:2447:47:1655:-114.305,0,-185.338	0/1:126:58,68:58:2060:68:2399:-177.746,0,-147.742	0/1:30:11,19:11:396:19:680:-52.4983,0,-26.9518	0/1:237:121,115:121:4275:115:4102:-297.886,0,-313.524	0/1:92:38,54:38:1332:54:1890:-142.645,0,-92.4823	0/1:320:147,173:147:5190:173:6163:-458.4,0,-370.915	0/1:230:132,97:132:4673:97:3462:-242.486,0,-351.437	0/1:112:45,67:45:1600:67:2395:-182.059,0,-110.567	0/1:107:45,62:45:1597:62:2195:-165.404,0,-111.808	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:108:50,58:50:1776:58:2061:-153.243,0,-127.612	0/1:122:58,64:58:2042:64:2273:-168.085,0,-147.323	0/1:369:167,202:167:5852:202:7166:-532.934,0,-415.716	0/1:175:90,85:90:3204:85:2996:-217.181,0,-235.904	0/1:112:61,51:61:2176:51:1823:-130.628,0,-162.391	0/1:161:81,80:81:2888:80:2822:-205.718,0,-211.691	0/1:267:117,150:117:4133:150:5345:-400.762,0,-291.778	0/1:71:36,35:36:1259:35:1248:-91.2517,0,-92.2384	0/1:126:70,56:70:2464:56:1971:-139.733,0,-184.084	0/1:128:64,64:64:2268:64:2278:-166.715,0,-165.851	0/1:65:30,35:30:1057:35:1248:-93.0579,0,-75.872	0/1:151:86,65:86:3057:65:2313:-162.96,0,-229.902	0/1:164:73,91:73:2509:91:3241:-242.502,0,-176.689	0/1:7:6,1:6:212:1:36:-1.49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chr08	6732909	.	C	A	97913.4	PASS	AB=0.409994;ABP=1068.97;AC=94;AF=0.5;AN=188;AO=6211;CIGAR=1X;DP=15149;DPB=15149;DPRA=0;EPP=13325.5;EPPR=19121.6;GTI=0;LEN=1;MEANALT=1.09574;MQM=59.994;MQMR=59.9991;NS=94;NUMALT=1;ODDS=94.0026;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222445;QR=318788;RO=8928;RPL=6192;RPP=13325.5;RPPR=19138.8;RPR=19;RUN=1;SAF=0;SAP=13490;SAR=6211;SRF=2;SRP=19372.5;SRR=8926;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:34,27:34:1179:27:968:-69.0745,0,-88.0455	0/1:264:163,101:163:5841:101:3624:-246.893,0,-446.327	0/1:242:120,122:120:4281:122:4357:-319.455,0,-312.618	0/1:384:253,130:253:9054:130:4637:-301.838,0,-699.179	0/1:132:89,43:89:3158:43:1544:-99.5171,0,-244.707	0/1:108:66,42:66:2364:42:1508:-103.503,0,-180.507	0/1:207:123,84:123:4393:84:3004:-208.278,0,-333.229	0/1:274:164,109:164:5838:109:3890:-267.754,0,-442.989	0/1:64:34,30:34:1216:30:1072:-77.5265,0,-90.4806	0/1:130:83,46:83:2957:46:1648:-109.563,0,-227.318	0/1:71:36,35:36:1292:35:1248:-91.2517,0,-95.2106	0/1:114:61,53:61:2169:53:1908:-137.68,0,-161.158	0/1:106:54,52:54:1944:52:1851:-134.96,0,-143.327	0/1:117:64,53:64:2296:53:1896:-135.698,0,-171.681	0/1:105:55,50:55:1961:50:1785:-129.323,0,-145.155	0/1:89:42,47:42:1508:47:1686:-125.235,0,-109.223	0/1:102:40,62:40:1427:62:2228:-170.079,0,-98.0217	0/1:97:50,47:50:1796:47:1688:-123.007,0,-132.722	0/1:56:30,26:30:1072:26:936:-67.7018,0,-79.9348	0/1:324:222,102:222:7899:102:3660:-232.069,0,-613.403	0/1:195:130,65:130:4630:65:2330:-151.259,0,-358.161	0/1:240:134,106:134:4750:106:3807:-270.579,0,-355.41	0/1:151:89,62:89:3177:62:2204:-153.168,0,-240.697	0/1:175:116,59:116:4153:59:2101:-136.677,0,-321.271	0/1:151:81,70:81:2893:70:2496:-179.438,0,-215.149	0/1:600:327,271:327:11694:271:9674:-690.252,0,-871.968	0/1:422:260,162:260:9275:162:5816:-396.516,0,-707.682	0/1:45:24,21:24:864:21:756:-54.8209,0,-64.5362	0/1:571:387,183:387:13865:183:6576:-419.971,0,-1075.67	0/1:224:111,113:111:3969:113:4015:-294.105,0,-289.969	0/1:225:149,76:149:5314:76:2713:-176.68,0,-410.661	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	0/1:40:22,18:22:788:18:648:-46.6107,0,-59.2036	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:285:151,134:151:5404:134:4804:-346.721,0,-400.697	0/1:350:207,143:207:7417:143:5116:-355.22,0,-562.212	0/1:124:67,57:67:2408:57:2044:-146.904,0,-179.648	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:239:150,89:150:5352:89:3200:-216.276,0,-409.866	0/1:52:26,26:26:932:26:921:-67.5521,0,-68.5453	0/1:216:155,60:155:5549:60:2148:-128.654,0,-434.6	0/1:66:37,29:37:1324:29:1044:-74.4068,0,-99.5941	0/1:93:58,35:58:2053:35:1245:-84.3578,0,-157.044	0/1:190:96,94:96:3388:94:3369:-246.23,0,-247.936	0/1:198:95,103:95:3378:103:3682:-271.978,0,-244.63	0/1:313:196,117:196:6898:117:4193:-283.329,0,-526.667	0/1:211:136,75:136:4865:75:2681:-178.016,0,-374.482	0/1:208:141,67:141:5022:67:2408:-154.362,0,-389.511	0/1:318:197,121:197:7049:121:4332:-294.326,0,-538.74	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:207:104,103:104:3732:103:3700:-270.887,0,-273.767	0/1:52:19,33:19:676:33:1178:-90.6741,0,-45.5144	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:249:158,91:158:5627:91:3276:-220.102,0,-431.592	0/1:93:49,44:49:1756:44:1576:-114.136,0,-130.328	0/1:28:24,4:24:864:4:144:-4.88478,0,-69.6537	0/1:35:23,12:23:828:12:432:-28.6851,0,-64.3081	0/1:143:76,67:76:2694:67:2412:-174.289,0,-199.655	0/1:167:81,86:81:2900:86:3092:-228.235,0,-210.964	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:213:127,86:127:4523:86:3078:-213.128,0,-343.115	0/1:355:189,166:189:6683:166:5946:-428.38,0,-494.679	0/1:121:62,59:62:2213:59:2116:-154.284,0,-163.008	0/1:147:95,52:95:3382:52:1858:-123.248,0,-260.342	0/1:304:199,104:199:7145:104:3736:-245.016,0,-551.68	0/1:226:137,89:137:4890:89:3188:-219.111,0,-372.217	0/1:45:24,21:24:864:21:756:-54.8209,0,-64.5362	0/1:136:70,66:70:2501:66:2349:-170.727,0,-184.401	0/1:136:82,54:82:2928:54:1936:-133.576,0,-222.815	0/1:31:21,10:21:752:10:356:-23.0493,0,-58.6743	0/1:158:95,63:95:3404:63:2264:-156.46,0,-259.012	0/1:103:68,35:68:2419:35:1248:-81.6188,0,-186.96	0/1:206:145,61:145:5163:61:2192:-135.533,0,-402.796	0/1:373:253,120:253:9060:120:4312:-275.971,0,-703.089	0/1:151:76,75:76:2717:75:2700:-197.788,0,-199.316	0/1:176:112,64:112:4032:64:2277:-152.209,0,-310.085	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:201:123,76:123:4405:76:2717:-184.508,0,-336.356	0/1:96:55,41:55:1947:41:1468:-103.517,0,-146.607	0/1:486:335,151:335:11956:151:5406:-340.37,0,-929.592	0/1:170:88,82:88:3148:82:2940:-213.659,0,-232.371	0/1:93:39,54:39:1396:54:1944:-147.24,0,-97.9433	0/1:139:78,61:78:2793:61:2184:-154.983,0,-209.765	0/1:229:112,117:112:4017:117:4189:-308.255,0,-292.78	0/1:82:41,41:41:1453:41:1457:-106.74,0,-106.379	0/1:103:48,55:48:1728:55:1980:-147.468,0,-124.799	0/1:127:70,57:70:2501:57:2016:-143.392,0,-187.11	0/1:61:32,29:32:1152:29:1034:-75.0106,0,-85.6273	0/1:156:75,81:75:2681:81:2912:-215.354,0,-194.573	0/1:85:38,47:38:1353:47:1688:-126.619,0,-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chr08	6733400	.	C	T	31495.9	PASS	AB=0.576498;ABP=177.761;AC=36;AF=0.193548;AN=186;AO=1995;CIGAR=1X;DP=8574;DPB=8574;DPRA=1.23328;EPP=4335.1;EPPR=14252.2;GTI=5;LEN=1;MEANALT=1.02439;MQM=38.4511;MQMR=53.4693;NS=93;NUMALT=1;ODDS=0.833391;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71475;QR=235415;RO=6578;RPL=1995;RPP=4335.1;RPPR=14252.2;RPR=0;RUN=1;SAF=0;SAP=4335.1;SAR=1995;SRF=0;SRP=14287;SRR=6578;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.878	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.322	0/1:183:66,117:66:2356:117:4200:-303.66,0,-157	0/0:175:175,0:175:6263:0:0:0,-52.6802,-562.071	0/1:94:44,50:44:1580:50:1769:-121.522,0,-113.865	0/1:40:13,27:13:464:27:968:-70.7115,0,-30.0146	0/0:127:127,0:127:4524:0:0:0,-38.2308,-404.82	0/0:216:216,0:216:7727:0:0:0,-65.0225,-693.75	0/0:69:69,0:69:2467:0:0:0,-20.7711,-221.962	0/0:120:120,0:120:4295:0:0:0,-36.1236,-385.543	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.2801	0/0:64:64,0:64:2276:0:0:0,-19.2659,-204.452	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.26	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.392	0/0:65:65,0:65:2332:0:0:0,-19.5669,-208.529	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.425	0/0:86:86,0:86:3071:0:0:0,-25.8886,-275.527	0/0:58:58,0:58:2088:0:0:0,-17.4597,-187.83	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.8421	0/0:205:205,0:205:7331:0:0:0,-61.7111,-657.293	0/0:131:130,1:130:4625:1:36:0,-36.0473,-411.945	0/1:159:48,111:48:1701:111:3968:-292.478,0,-104.722	0/0:75:75,0:75:2680:0:0:0,-22.5772,-240.335	0/1:121:54,67:54:1944:67:2400:-166.697,0,-138.071	0/0:75:75,0:75:2677:0:0:0,-22.5772,-240.164	0/1:343:181,162:181:6466:162:5816:-395.736,0,-477.053	0/1:249:102,147:102:3645:147:5276:-371.572,0,-252.044	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.2987	0/0:295:295,0:295:10583:0:0:0,-88.8038,-948.615	0/0:64:59,5:59:2097:5:180:0,-3.68296,-173.153	0/1:109:47,62:47:1684:62:2216:-154.193,0,-118.604	1/1:2:0,2:0:0:2:57:-5.20513,-0.60206,0	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.0476	0/1:7:2,5:2:72:5:180:-12.8125,0,-4.72247	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0648	0/0:155:155,0:155:5564:0:0:0,-46.6596,-499.642	0/1:135:80,55:80:2872:55:1976:-126.544,0,-217.479	0/1:61:20,41:20:716:41:1476:-108.31,0,-46.1337	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/1:143:57,86:57:2040:86:3077:-215.295,0,-140.452	0/1:30:14,16:14:504:16:564:-38.5486,0,-36.6062	0/1:140:58,82:58:2075:82:2944:-204.987,0,-144.26	0/1:79:44,35:44:1584:35:1248:-82.4952,0,-118.289	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.186	0/1:88:20,68:20:704:68:2436:-183.573,0,-37.132	0/1:159:80,79:80:2860:79:2840:-195.956,0,-209.403	0/1:114:56,58:56:2004:58:2065:-141.172,0,-145.794	0/0:123:123,0:123:4404:0:0:0,-37.0267,-395.397	0/0:141:141,0:141:5056:0:0:0,-42.4452,-453.691	0/0:107:107,0:107:3829:0:0:0,-32.2102,-344.288	0/1:5:4,1:4:140:1:36:-1.91845,0,-11.4208	0/1:124:41,83:41:1476:83:2980:-217.17,0,-95.6191	0/1:28:13,15:13:464:15:525:-37.3193,0,-33.527	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82968	0/1:126:42,84:42:1476:84:3020:-216.9,0,-94.7814	0/1:39:12,27:12:432:27:968:-69.1617,0,-27.2539	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0052	0/1:14:6,8:6:216:8:288:-20.9423,0,-15.5544	0/0:79:79,0:79:2823:0:0:0,-23.7814,-253.036	0/0:53:53,0:53:1900:0:0:0,-15.9546,-170.169	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1573	0/1:147:68,79:68:2444:79:2844:-199.341,0,-175.301	0/0:138:138,0:138:4939:0:0:0,-41.5421,-443.24	0/0:91:91,0:91:3260:0:0:0,-27.3937,-292.853	0/0:107:107,0:107:3805:0:0:0,-32.2102,-341.354	0/0:162:160,2:160:5736:2:72:0,-42.3304,-506.659	0/1:138:31,107:31:1116:107:3844:-282.933,0,-58.8875	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.2788	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.221	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.302	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.3788	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.198	0/1:77:26,51:26:928:51:1828:-132.495,0,-60.0849	0/0:130:130,0:130:4630:0:0:0,-39.1339,-415.58	0/0:136:136,0:136:4880:0:0:0,-40.9401,-437.17	0/0:193:191,1:191:6844:1:36:0,-54.7194,-611.147	0/0:138:138,0:138:4936:0:0:0,-41.5421,-443.731	0/1:11:6,5:6:216:5:176:-11.4987,0,-16.4588	0/0:145:144,1:144:5176:1:36:0,-40.1687,-460.987	0/1:193:100,93:100:3584:93:3325:-225.825,0,-264.159	0/0:195:195,0:195:6988:0:0:0,-58.7008,-626.56	0/0:80:80,0:80:2853:0:0:0,-24.0824,-256.223	0/0:43:43,0:43:1544:0:0:0,-12.9443,-138.69	0/1:82:37,45:37:1332:45:1616:-111.613,0,-95.2752	0/0:138:138,0:138:4927:0:0:0,-41.5421,-441.918	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.895	0/1:67:30,37:30:1076:37:1328:-93.1533,0,-76.5664	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.488	0/1:19:6,13:6:216:13:468:-34.2541,0,-14.0429	0/1:55:23,32:23:828:32:1152:-81.5029,0,-58.1849	0/1:59:25,34:25:900:34:1205:-84.7736,0,-63.4054	0/0:97:97,0:97:3465:0:0:0,-29.1999,-310.826	0/0:92:91,1:91:3260:1:36:0,-24.3072,-289.443
chr08	6951565	.	G	A	127151	PASS	AB=0.455186;ABP=57.5056;AC=152;AF=0.808511;AN=188;AO=5913;CIGAR=1X;DP=7630;DPB=7630;DPRA=0;EPP=12842.9;EPPR=3716.23;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.8791;MQMR=60;NS=94;NUMALT=1;ODDS=1.98024;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211870;QR=61110;RO=1710;RPL=5913;RPP=12842.9;RPPR=3716.23;RPR=0;RUN=1;SAF=0;SAP=12842.9;SAR=5913;SRF=0;SRP=3716.23;SRR=1710;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:629:-56.9343,-5.41854,0	1/1:144:0,144:0:0:144:5156:-464.17,-43.3483,0	0/1:89:46,43:46:1632:43:1548:-112.821,0,-120.377	1/1:83:0,83:0:0:83:2978:-268.251,-24.9855,0	0/1:31:19,12:19:684:12:432:-29.8893,0,-52.5584	0/1:46:16,30:16:576:30:1080:-83.3424,0,-38.3276	1/1:47:0,47:0:0:47:1684:-151.845,-14.1484,0	1/1:154:0,154:0:0:154:5512:-496.203,-46.3586,0	1/1:33:0,33:0:0:33:1180:-106.491,-9.93399,0	1/1:62:0,62:0:0:62:2213:-199.325,-18.6639,0	1/1:158:1,157:1:36:157:5631:-503.273,-43.9645,0	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	1/1:67:0,67:0:0:67:2412:-217.335,-20.169,0	1/1:169:0,169:0:0:169:6054:-543.528,-50.8741,0	1/1:53:0,53:0:0:53:1893:-170.644,-15.9546,0	1/1:93:0,93:0:0:93:3348:-301.525,-27.9958,0	1/1:84:0,84:0:0:84:3007:-270.838,-25.2865,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:120:0,119:0:0:119:4271:-384.206,-35.8226,0	1/1:124:0,124:0:0:124:4460:-401.568,-37.3277,0	0/1:71:47,23:47:1680:23:828:-53.4118,0,-130.055	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:56:17,39:17:608:39:1396:-109.081,0,-38.1943	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	0/1:206:120,86:120:4296:86:3088:-216.135,0,-324.805	0/1:180:109,71:109:3916:71:2520:-172.865,0,-298.446	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:201:0,201:0:0:201:7209:-648.79,-60.507,0	1/1:140:3,136:3:108:136:4877:-429.035,-32.0155,0	0/1:50:19,31:19:684:31:1104:-84.6168,0,-46.8388	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:27:0,27:0:0:27:972:-87.7864,-8.12781,0	1/1:130:0,129:0:0:129:4628:-416.362,-38.8329,0	0/1:231:116,115:116:4135:115:4130:-302.334,0,-302.797	0/1:116:57,59:57:2040:59:2102:-153.586,0,-148.953	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:82:46,36:46:1652:36:1296:-92.2549,0,-124.284	0/1:42:19,23:19:672:23:824:-61.8401,0,-48.1636	0/1:107:61,46:61:2170:46:1652:-116.758,0,-163.355	0/1:37:19,18:19:676:18:644:-47.1525,0,-50.0299	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:65:36,29:36:1288:29:1044:-74.7079,0,-96.6566	0/1:97:45,51:45:1616:51:1832:-135.902,0,-116.471	0/1:120:63,57:63:2256:57:2032:-147.026,0,-167.179	1/1:73:0,73:0:0:73:2605:-234.691,-21.9752,0	1/1:147:0,147:0:0:147:5288:-475.68,-44.2514,0	1/1:93:0,93:0:0:93:3348:-301.533,-27.9958,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:146:84,62:84:2985:62:2228:-156.833,0,-224.931	0/1:93:44,49:44:1554:49:1754:-130.145,0,-112.154	0/1:22:15,7:15:536:7:252:-16.4063,0,-41.9522	0/1:110:60,50:60:2148:50:1790:-128.268,0,-160.474	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:29:11,18:11:384:18:628:-48.1119,0,-26.1648	1/1:81:0,81:0:0:81:2908:-261.94,-24.3834,0	1/1:173:3,170:3:104:170:6108:-540.113,-42.3754,0	1/1:13:0,13:0:0:13:445:-40.3754,-3.91339,0	0/1:99:58,41:58:2080:41:1446:-100.602,0,-157.668	1/1:162:0,162:0:0:162:5802:-522.287,-48.7669,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:92:1,91:1:36:91:3263:-290.29,-24.0965,0	0/1:220:180,40:180:6439:40:1436:-63.3111,0,-513.37	1/1:62:1,61:1:36:61:2192:-193.941,-15.0656,0	1/1:62:0,62:0:0:62:2226:-200.604,-18.6639,0	1/1:132:0,132:0:0:132:4725:-425.407,-39.736,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:70:0,70:0:0:70:2497:-224.96,-21.0721,0	0/1:52:31,21:31:1107:21:756:-52.7137,0,-84.2866	1/1:139:0,137:0:0:137:4907:-441.422,-41.2411,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:107:0,107:0:0:107:3824:-344.354,-32.2102,0	1/1:115:0,115:0:0:115:4107:-369.536,-34.6185,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:73:0,73:0:0:73:2620:-236.026,-21.9752,0	0/1:77:32,45:32:1144:45:1605:-121.559,0,-80.0902	1/1:60:0,60:0:0:60:2152:-193.946,-18.0618,0	1/1:77:0,77:0:0:77:2746:-247.38,-23.1793,0	1/1:74:1,73:1:36:73:2611:-231.531,-18.6779,0	0/1:59:29,30:29:1035:30:1076:-79.3921,0,-75.7023	1/1:106:0,106:0:0:106:3784:-340.757,-31.9092,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:64:33,31:33:1184:31:1116:-81.4858,0,-87.6024	1/1:68:0,68:0:0:68:2432:-219.127,-20.47,0	0/1:154:73,81:73:2615:81:2907:-215.496,0,-189.238	0/1:286:154,132:154:5494:132:4710:-337.894,0,-408.493	0/1:32:20,12:20:716:12:423:-28.7721,0,-55.1348	1/1:43:0,43:0:0:43:1548:-139.557,-12.9443,0	1/1:48:0,48:0:0:48:1724:-155.441,-14.4494,0
chr08	6951575	.	T	C	126490	PASS	AB=0.455153;ABP=57.9353;AC=152;AF=0.808511;AN=188;AO=5929;CIGAR=1X;DP=7653;DPB=7653;DPRA=0;EPP=12877.7;EPPR=3744.46;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.8762;MQMR=60;NS=94;NUMALT=1;ODDS=1.73987;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=211365;QR=61683;RO=1723;RPL=5929;RPP=12877.7;RPPR=3744.46;RPR=0;RUN=1;SAF=0;SAP=12877.7;SAR=5929;SRF=0;SRP=3744.46;SRR=1723;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:625:-56.5706,-5.41854,0	1/1:140:0,140:0:0:140:4979:-448.246,-42.1442,0	0/1:89:46,43:46:1648:43:1503:-108.765,0,-121.817	1/1:84:0,84:0:0:84:2959:-266.54,-25.2865,0	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	0/1:46:16,30:16:576:30:1065:-81.9889,0,-38.3276	1/1:48:0,48:0:0:48:1690:-152.38,-14.4494,0	1/1:157:0,157:0:0:157:5534:-498.176,-47.2617,0	1/1:34:0,34:0:0:34:1216:-109.711,-10.235,0	1/1:64:0,64:0:0:64:2296:-206.793,-19.2659,0	1/1:159:1,158:1:36:158:5630:-503.184,-44.2655,0	1/1:73:1,72:1:36:72:2592:-229.93,-18.3769,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:169:0,169:0:0:169:6026:-542.281,-50.8741,0	1/1:53:0,53:0:0:53:1908:-171.995,-15.9546,0	1/1:93:0,93:0:0:93:3310:-298.106,-27.9958,0	1/1:82:0,82:0:0:82:2933:-264.18,-24.6845,0	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0	1/1:61:0,61:0:0:61:2181:-196.554,-18.3628,0	1/1:118:0,118:0:0:118:4232:-381.059,-35.5215,0	1/1:124:0,124:0:0:124:4396:-395.809,-37.3277,0	0/1:70:47,23:47:1684:23:824:-53.4108,0,-130.775	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:55:17,38:17:612:38:1368:-106.864,0,-38.8568	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:207:117,90:117:4177:90:3221:-227.797,0,-313.798	0/1:184:111,73:111:3950:73:2597:-178.588,0,-300.301	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:198:0,198:0:0:198:7074:-636.635,-59.6039,0	1/1:140:3,137:3:108:137:4890:-430.169,-32.069,0	0/1:49:19,30:19:680:30:1065:-81.4069,0,-46.7787	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:10:4,6:4:140:6:212:-16.4145,0,-9.93428	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:27:0,27:0:0:27:972:-87.7864,-8.12781,0	1/1:130:0,130:0:0:130:4638:-417.581,-39.1339,0	0/1:235:116,119:116:4149:119:4166:-304.323,0,-302.85	0/1:115:57,58:57:2033:58:2088:-153.567,0,-148.622	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:84:48,36:48:1720:36:1281:-90.3002,0,-129.799	0/1:42:19,23:19:684:23:828:-62.2009,0,-49.2471	0/1:111:64,47:64:2304:47:1662:-116.449,0,-174.206	0/1:38:19,19:19:669:19:665:-48.7336,0,-49.0948	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:65:36,29:36:1296:29:1036:-73.987,0,-97.377	0/1:96:45,51:45:1612:51:1828:-135.902,0,-116.471	0/1:121:63,58:63:2245:58:2039:-147.351,0,-165.887	1/1:73:0,73:0:0:73:2605:-234.691,-21.9752,0	1/1:147:0,147:0:0:147:5239:-471.272,-44.2514,0	1/1:93:0,93:0:0:93:3295:-296.763,-27.9958,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:145:83,62:83:2965:62:2209:-155.424,0,-223.432	0/1:93:44,49:44:1584:49:1726:-127.611,0,-114.856	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:111:60,51:60:2137:51:1813:-130.031,0,-159.182	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:17:0,17:0:0:17:597:-54.0561,-5.11751,0	0/1:31:12,19:12:432:19:684:-52.5556,0,-29.8893	1/1:80:0,80:0:0:80:2868:-258.342,-24.0824,0	1/1:172:3,169:3:108:169:6061:-535.512,-41.702,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:101:59,42:59:2120:42:1489:-103.898,0,-160.664	1/1:163:0,162:0:0:162:5755:-517.7,-48.7669,0	1/1:64:0,64:0:0:64:2285:-205.91,-19.2659,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:93:1,92:1:36:92:3274:-291.279,-24.3975,0	0/1:221:181,40:181:6458:40:1417:-61.2977,0,-514.778	1/1:62:1,61:1:36:61:2196:-194.301,-15.0656,0	1/1:62:0,62:0:0:62:2201:-198.354,-18.6639,0	1/1:132:0,132:0:0:132:4676:-420.999,-39.736,0	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	1/1:71:0,71:0:0:71:2525:-227.47,-21.3731,0	0/1:54:32,22:32:1148:22:792:-55.3501,0,-87.3742	1/1:140:0,140:0:0:140:4978:-446.727,-42.1442,0	1/1:65:0,65:0:0:65:2325:-209.508,-19.567,0	1/1:108:0,108:0:0:108:3869:-348.402,-32.5112,0	1/1:116:0,116:0:0:116:4156:-373.168,-34.9195,0	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	1/1:72:0,72:0:0:72:2547:-229.462,-21.6742,0	0/1:78:32,46:32:1148:46:1652:-125.488,0,-80.1495	1/1:60:0,60:0:0:60:2160:-194.665,-18.0618,0	1/1:78:0,78:0:0:78:2808:-252.954,-23.4803,0	1/1:75:0,75:0:0:75:2677:-241.065,-22.5773,0	0/1:59:31,28:31:1108:28:974:-70.2074,0,-82.2702	1/1:104:0,104:0:0:104:3717:-334.73,-31.3071,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:63:33,30:33:1188:30:1080:-78.5484,0,-88.2637	1/1:66:0,66:0:0:66:2353:-212.019,-19.868,0	0/1:153:73,80:73:2628:80:2872:-212.648,0,-190.709	0/1:289:158,131:158:5676:131:4696:-335.727,0,-423.959	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	1/1:44:0,44:0:0:44:1565:-141.083,-13.2453,0	1/1:47:0,47:0:0:47:1687:-152.115,-14.1484,0
chr08	7048604	.	AGATC	GGATC,GGATT	215318	PASS	AB=0.449744,0.545875;ABP=93.1505,78.1208;AC=152,36;AF=0.808511,0.191489;AN=188;AO=7817,2257;CIGAR=1X4M,1X3M1X;DP=10122;DPB=10124;DPRA=0,1.2412;EPP=16977.4,4904.02;EPPR=18.2106;GTI=2;LEN=1,5;MEANALT=1.87234,2.39535;MQM=59.9745,59.6292;MQMR=60;NS=94;NUMALT=2;ODDS=0.542555;PAIRED=0,0;PAIREDR=0;PAO=5,5;PQA=133,133;PQR=0;PRO=0;QA=275994,79161;QR=241;RO=7;RPL=7816,2257;RPP=16968.7,4904.02;RPPR=18.2106;RPR=1,0;RUN=1,1;SAF=7816,2257;SAP=16968.7,4904.02;SAR=1,0;SRF=7;SRP=18.2106;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1067,0:-96.3412,-9.0309,0,-96.3412,-9.0309,-96.3412	1/1:129:0,127,0:0:0:127,0:4530,0:-407.547,-38.2308,0,-407.547,-38.2308,-407.547	1/2:188:1,101,84:1:36:101,84:3558,2930:-524.685,-235.312,-207.845,-286.727,0,-264.378	1/1:240:0,239,1:0:0:239,1:8455,30:-760.641,-71.9462,0,-758.242,-69.2476,-757.941	1/2:43:0,12,31:0:0:12,31:432,1075:-122.972,-87.7197,-84.1074,-35.6088,0,-26.2769	1/2:75:0,22,53:0:0:22,53:783,1882:-217.51,-153.695,-147.072,-64.1703,0,-48.2157	1/1:160:0,160,0:0:0:160,0:5640,0:-507.726,-48.1648,0,-507.726,-48.1648,-507.726	1/1:86:0,86,0:0:0:86,0:3053,0:-275.001,-25.8886,0,-275.001,-25.8886,-275.001	1/1:94:0,94,0:0:0:94,0:3344,0:-301.07,-28.2968,0,-301.07,-28.2968,-301.07	1/1:92:0,92,0:0:0:92,0:3252,0:-292.84,-27.6948,0,-292.84,-27.6948,-292.84	1/1:56:0,55,0:0:0:55,0:1922,0:-172.879,-16.5567,0,-172.879,-16.5567,-172.879	1/1:66:0,65,0:0:0:65,0:2277,0:-204.987,-19.567,0,-204.987,-19.567,-204.987	1/1:65:0,65,0:0:0:65,0:2291,0:-206.452,-19.567,0,-206.452,-19.567,-206.452	1/1:85:0,84,0:0:0:84,0:2970,0:-267.175,-25.2865,0,-267.175,-25.2865,-267.175	1/1:69:0,69,0:0:0:69,0:2426,0:-218.596,-20.7711,0,-218.596,-20.7711,-218.596	1/1:51:0,51,0:0:0:51,0:1803,0:-162.551,-15.3525,0,-162.551,-15.3525,-162.551	1/1:65:0,65,0:0:0:65,0:2284,0:-205.823,-19.567,0,-205.823,-19.567,-205.823	1/1:61:0,61,0:0:0:61,0:2143,0:-193.135,-18.3628,0,-193.135,-18.3628,-193.135	1/1:45:0,44,0:0:0:44,0:1539,0:-138.442,-13.2453,0,-138.442,-13.2453,-138.442	1/1:243:0,243,0:0:0:243,0:8617,0:-775.531,-73.1503,0,-775.531,-73.1503,-775.531	1/1:148:0,146,0:0:0:146,0:5150,0:-463.314,-43.9504,0,-463.314,-43.9504,-463.314	1/2:164:0,42,121:0:0:42,121:1495,4241:-466.829,-344.983,-332.339,-121.782,0,-85.3574	1/1:81:0,81,0:0:0:81,0:2904,0:-261.595,-24.3834,0,-261.595,-24.3834,-261.595	1/2:111:0,54,56:0:0:54,56:1932,1974:-318.308,-160.761,-144.506,-157.59,0,-140.732	1/1:53:0,52,0:0:0:52,0:1797,0:-161.795,-15.6536,0,-161.795,-15.6536,-161.795	1/2:339:0,167,172:0:0:167,172:5904,6041:-972.859,-492.013,-441.741,-481.198,0,-429.421	1/2:204:0,103,101:0:0:103,101:3600,3543:-581.494,-288.653,-257.647,-293.191,0,-262.787	1/1:44:0,44,0:0:0:44,0:1544,0:-139.247,-13.2453,0,-139.247,-13.2453,-139.247	1/1:327:0,325,0:0:0:325,0:11513,0:-1035.73,-97.8348,0,-1035.73,-97.8348,-1035.73	1/1:162:0,159,3:0:0:159,3:5586,101:-502.528,-47.8638,0,-494.344,-39.3433,-493.441	1/2:171:0,72,97:0:0:72,97:2542,3402:-483.834,-276.832,-255.158,-206.995,0,-177.795	1/2:22:0,17,4:0:0:17,4:593,132:-58.8813,-10.6428,-5.52525,-48.218,0,-47.0139	1/1:31:0,29,2:0:0:29,2:1035,72:-93.1034,-8.72987,0,-87.2284,-2.49521,-86.6263	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:9:0,9,0:0:0:9,0:309,0:-28.1407,-2.70927,0,-28.1407,-2.70927,-28.1407	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:199:0,196,0:0:0:196,0:6944,0:-624.719,-59.0019,0,-624.719,-59.0019,-624.719	1/2:250:0,128,121:0:0:128,121:4553,4248:-716.808,-345.756,-307.224,-371.088,0,-334.664	1/2:69:0,33,35:0:0:33,35:1168,1231:-195.465,-100.323,-90.3891,-95.2693,0,-84.7332	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:191:0,92,98:0:0:92,98:3249,3458:-546.133,-281.55,-253.855,-264.577,0,-235.076	1/2:62:0,32,30:0:0:32,30:1118,1036:-175.452,-84.5065,-74.8735,-91.293,0,-82.2621	1/2:154:0,64,89:0:0:64,89:2288,3115:-439.753,-253.191,-233.925,-186.664,0,-159.873	1/2:53:0,25,28:0:0:25,28:887,987:-152.979,-80.7137,-73.188,-72.6192,0,-64.1904	1/1:60:0,60,0:0:0:60,0:2096,0:-188.908,-18.0618,0,-188.908,-18.0618,-188.908	1/2:79:0,31,48:0:0:31,48:1108,1679:-227.108,-136.764,-127.432,-90.6991,0,-76.2496	1/2:135:0,54,81:0:0:54,81:1915,2816:-385.285,-229.266,-213.01,-156.371,0,-131.988	1/2:211:0,87,124:0:0:87,124:3058,4376:-605.546,-356.642,-330.452,-249.256,0,-211.929	1/1:154:0,154,0:0:0:154,0:5460,0:-491.532,-46.3586,0,-491.532,-46.3586,-491.532	1/1:171:0,170,0:0:0:170,0:5942,0:-534.537,-51.1751,0,-534.537,-51.1751,-534.537	1/1:179:0,178,1:0:0:178,1:6343,34:-570.622,-53.5833,0,-567.864,-50.4855,-567.563	1/2:18:0,8,10:0:0:8,10:284,343:-51.3357,-28.1901,-25.7819,-23.4951,0,-20.4848	1/2:183:0,74,108:0:0:74,108:2602,3810:-522.015,-310.216,-287.94,-211.791,0,-179.28	1/2:34:0,19,15:0:0:19,15:684,530:-99.3257,-43.511,-37.7915,-56.1708,0,-51.6553	1/2:37:0,15,22:0:0:15,22:536,773:-106.973,-63.2686,-58.7532,-44.0594,0,-37.4367	1/2:143:0,60,83:0:0:60,83:2143,2918:-412.57,-237.849,-219.788,-175.075,0,-150.09	1/2:74:0,38,35:0:0:38,35:1322,1222:-206.872,-99.3847,-87.9456,-107.478,0,-96.9419	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/2:15:0,11,4:0:0:11,4:392,144:-44.0594,-12.1095,-8.79817,-32.3087,0,-31.1046	1/1:94:0,94,0:0:0:94,0:3334,0:-300.278,-28.2968,0,-300.278,-28.2968,-300.278	1/1:118:0,118,0:0:0:118,0:4092,0:-368.471,-35.5215,0,-368.471,-35.5215,-368.471	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:311:0,151,158:0:0:151,158:5375,5562:-890.878,-452.806,-407.351,-438.095,0,-390.533	1/1:228:0,226,0:0:0:226,0:8021,0:-721.608,-68.0328,0,-721.608,-68.0328,-721.608	1/1:65:0,65,0:0:0:65,0:2274,0:-204.92,-19.567,0,-204.92,-19.567,-204.92	1/1:95:0,95,0:0:0:95,0:3349,0:-301.629,-28.5979,0,-301.629,-28.5979,-301.629	1/1:175:0,174,1:0:0:174,1:6192,36:-557.017,-52.3792,0,-554.08,-49.082,-553.779	1/2:132:0,35,97:0:0:35,97:1239,3398:-377.53,-276.833,-266.297,-101.049,0,-71.8492	1/1:23:0,23,0:0:0:23,0:794,0:-71.7758,-6.92369,0,-71.7758,-6.92369,-71.7758	1/1:99:0,99,0:0:0:99,0:3474,0:-312.873,-29.802,0,-312.873,-29.802,-312.873	1/1:84:0,83,0:0:0:83,0:2906,0:-261.436,-24.9855,0,-261.436,-24.9855,-261.436	1/1:35:0,35,0:0:0:35,0:1243,0:-112.169,-10.5361,0,-112.169,-10.5361,-112.169	1/1:135:0,132,3:0:0:132,3:4687,108:-421.604,-39.736,0,-412.792,-30.604,-411.889	1/2:76:0,34,41:0:0:34,41:1200,1413:-212.584,-114.861,-104.626,-97.8471,0,-85.5049	1/1:151:0,150,0:0:0:150,0:5309,0:-477.546,-45.1545,0,-477.546,-45.1545,-477.546	1/1:238:4,233,0:4:133:233,0:8221,0:-727.626,-59.304,0,-728.83,-70.14,-739.592	1/1:81:0,81,0:0:0:81,0:2847,0:-256.468,-24.3834,0,-256.468,-24.3834,-256.468	1/1:128:0,127,0:0:0:127,0:4478,0:-402.833,-38.2308,0,-402.833,-38.2308,-402.833	1/2:14:0,8,6:0:0:8,6:288,214:-41.3028,-17.8016,-15.3933,-23.8592,0,-22.053	1/1:145:0,142,3:0:0:142,3:5042,100:-453.593,-42.7463,0,-445.504,-34.3239,-444.601	1/2:136:0,57,79:0:0:57,79:2021,2794:-392.483,-227.838,-210.679,-164.943,0,-141.162	1/1:269:1,268,0:1:36:268,0:9523,0:-853.376,-77.3788,0,-853.677,-80.676,-856.615	1/1:92:0,91,0:0:0:91,0:3153,0:-283.636,-27.3937,0,-283.636,-27.3937,-283.636	1/1:47:0,47,0:0:0:47,0:1634,0:-147.347,-14.1484,0,-147.347,-14.1484,-147.347	1/2:81:0,39,42:0:0:39,42:1362,1462:-230.019,-119.231,-107.491,-111.137,0,-98.4934	1/1:121:0,121,0:0:0:121,0:4212,0:-379.206,-36.4246,0,-379.206,-36.4246,-379.206	1/1:36:0,36,0:0:0:36,0:1264,0:-114.063,-10.8371,0,-114.063,-10.8371,-114.063	1/2:93:0,43,50:0:0:43,50:1493,1742:-263.363,-141.994,-129.05,-121.717,0,-106.665	1/1:73:0,72,0:0:0:72,0:2456,0:-220.93,-21.6742,0,-220.93,-21.6742,-220.93	1/2:56:0,35,21:0:0:35,21:1244,724:-160.483,-59.1033,-48.5672,-101.729,0,-95.407	1/2:113:0,56,57:0:0:56,57:1961,1987:-321.489,-161.932,-145.074,-159.906,0,-142.748	1/2:68:0,26,41:0:0:26,41:906,1442:-191.048,-117.371,-109.544,-73.6684,0,-61.3262	1/1:103:1,101,0:1:36:101,0:3586,0:-319.35,-27.4666,0,-319.651,-30.404,-322.589	1/1:85:0,85,0:0:0:85,0:2960,0:-266.634,-25.5876,0,-266.634,-25.5876,-266.634
chr08	7048713	.	TCAA	ACAG,ACAA	190166	PASS	AB=0.431424,0.563657;ABP=144.179,124.653;AC=155,33;AF=0.824468,0.175532;AN=188;AO=6940,1981;CIGAR=1X2M1X,1X3M;DP=8970;DPB=8970;DPRA=0,1.34994;EPP=15047,4304.7;EPPR=7.35324;GTI=5;LEN=4,1;MEANALT=1.90426,2.41026;MQM=49.1556,59.471;MQMR=60;NS=94;NUMALT=2;ODDS=0.0948142;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=244424,70893;QR=60;RO=2;RPL=3,1;RPP=15047,4296.02;RPPR=7.35324;RPR=6937,1980;RUN=1,1;SAF=0,1;SAP=15073,4296.02;SAR=6940,1980;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16,0:0:0:16,0:558,0:-50.1115,-4.81648,0,-50.1115,-4.81648,-50.1115	1/1:95:0,93,0:0:0:93,0:3303,0:-293.739,-27.9958,0,-293.739,-27.9958,-293.739	1/2:138:1,65,72:1:30:65,72:2285,2569:-389.805,-206.666,-189.497,-181.093,0,-161.817	1/1:208:0,205,0:0:0:205,0:7217,0:-645.189,-61.7112,0,-645.189,-61.7112,-645.189	1/2:58:0,11,47:0:0:11,47:395,1679:-169.205,-137.181,-133.87,-32.3806,0,-18.2322	2/2:22:0,2,20:0:0:2,20:71,716:-64.4781,-59.996,-59.394,-6.0206,-1.2489,0	1/1:155:0,153,0:0:0:153,0:5379,0:-481.428,-46.0576,0,-481.428,-46.0576,-481.428	1/1:125:0,124,0:0:0:124,0:4354,0:-387.122,-37.3277,0,-387.122,-37.3277,-387.122	1/1:119:0,118,0:0:0:118,0:4169,0:-371.031,-35.5215,0,-371.031,-35.5215,-371.031	1/1:132:0,132,0:0:0:132,0:4654,0:-416.343,-39.736,0,-416.343,-39.736,-416.343	1/1:23:0,23,0:0:0:23,0:815,0:-72.8563,-6.92369,0,-72.8563,-6.92369,-72.8563	1/1:69:0,68,0:0:0:68,0:2416,0:-214.246,-20.47,0,-214.246,-20.47,-214.246	1/1:86:0,85,0:0:0:85,0:2991,0:-265.97,-25.5876,0,-265.97,-25.5876,-265.97	1/1:48:0,48,0:0:0:48,0:1681,0:-149.058,-14.4494,0,-149.058,-14.4494,-149.058	1/1:68:0,68,0:0:0:68,0:2422,0:-217.253,-20.47,0,-217.253,-20.47,-217.253	1/1:46:0,46,0:0:0:46,0:1614,0:-144.135,-13.8474,0,-144.135,-13.8474,-144.135	1/1:70:0,70,0:0:0:70,0:2451,0:-218.076,-21.0721,0,-218.076,-21.0721,-218.076	1/1:64:0,64,0:0:0:64,0:2280,0:-202.989,-19.2659,0,-202.989,-19.2659,-202.989	1/1:30:0,30,0:0:0:30,0:1071,0:-95.0449,-9.0309,0,-95.0449,-9.0309,-95.0449	1/1:260:0,260,0:0:0:260,0:9130,0:-816.05,-78.2678,0,-816.05,-78.2678,-816.05	1/1:101:0,100,1:0:0:100,1:3502,36:-312.236,-30.103,0,-309.298,-26.8058,-308.997	1/2:122:0,28,92:0:0:28,92:959,3291:-345.492,-268.223,-259.794,-77.3426,0,-49.6478	1/1:89:0,86,0:0:0:86,0:3039,0:-271.736,-25.8886,0,-271.736,-25.8886,-271.736	1/2:173:0,79,93:0:0:79,93:2757,3293:-489.713,-267.992,-244.211,-221.759,0,-193.763	1/1:69:0,68,0:0:0:68,0:2402,0:-213.475,-20.47,0,-213.475,-20.47,-213.475	1/2:365:0,136,228:0:0:136,228:4773,8200:-1055.25,-668.939,-627.999,-386.302,0,-317.667	1/2:170:0,73,96:0:0:73,96:2618,3456:-493.514,-282.058,-260.082,-211.564,0,-182.665	1/1:34:0,33,0:0:0:33,0:1149,0:-102.173,-9.93399,0,-102.173,-9.93399,-102.173	1/1:254:0,253,0:0:0:253,0:8947,0:-802.391,-76.1606,0,-802.391,-76.1606,-802.391	1/1:95:0,94,1:0:0:94,1:3316,36:-295.661,-28.2968,0,-292.723,-24.9996,-292.422	1/2:145:0,74,69:0:0:74,69:2613,2480:-413.855,-202.197,-179.921,-211.745,0,-190.973	1/1:4:0,4,0:0:0:4,0:144,0:-13.2414,-1.20412,0,-13.2414,-1.20412,-13.2414	1/1:2:0,2,0:0:0:2,0:72,0:-6.79966,-0.60206,0,-6.79966,-0.60206,-6.79966	1/1:4:0,4,0:0:0:4,0:143,0:-13.1108,-1.20412,0,-13.1108,-1.20412,-13.1108	1/1:6:0,6,0:0:0:6,0:215,0:-19.5319,-1.80618,0,-19.5319,-1.80618,-19.5319	1/1:4:0,4,0:0:0:4,0:138,0:-12.3142,-1.20412,0,-12.3142,-1.20412,-12.3142	1/1:188:0,185,0:0:0:185,0:6492,0:-581.58,-55.6906,0,-581.58,-55.6906,-581.58	1/2:201:0,93,107:0:0:93,107:3260,3833:-575.941,-312.581,-284.585,-263.392,0,-231.182	1/2:47:0,26,21:0:0:26,21:928,756:-136.961,-62.0341,-54.2073,-75.2835,0,-68.9619	1/1:4:0,4,0:0:0:4,0:144,0:-13.2414,-1.20412,0,-13.2414,-1.20412,-13.2414	1/2:170:0,82,88:0:0:82,88:2926,3164:-494.991,-258.44,-233.756,-236.907,0,-210.417	1/2:33:0,18,15:0:0:18,15:646,532:-96.0841,-43.6976,-38.2791,-52.742,0,-48.2266	1/2:161:0,47,114:0:0:47,114:1653,4047:-462.527,-329.701,-315.552,-133.176,0,-98.8583	1/2:66:0,32,33:0:0:32,33:1126,1179:-187.298,-96.1963,-86.5633,-91.1673,0,-81.2333	1/1:65:0,65,0:0:0:65,0:2261,0:-202.705,-19.567,0,-202.705,-19.567,-202.705	1/2:142:0,66,76:0:0:66,76:2325,2728:-411.042,-222.872,-203.004,-188.524,0,-165.646	1/2:102:0,36,66:0:0:36,66:1289,2372:-297.079,-193.868,-183.031,-103.566,0,-83.6976	1/2:224:0,88,133:0:0:88,133:3095,4728:-636.139,-385.343,-358.852,-250.86,0,-210.823	1/1:146:0,146,0:0:0:146,0:5136,0:-460.014,-43.9504,0,-460.014,-43.9504,-460.014	1/1:129:0,129,0:0:0:129,0:4529,0:-405.919,-38.8329,0,-405.919,-38.8329,-405.919	1/1:209:0,209,0:0:0:209,0:7343,0:-659.038,-62.9153,0,-659.038,-62.9153,-659.038	1/1:3:0,3,0:0:0:3,0:102,0:-9.49156,-0.90309,0,-9.49156,-0.90309,-9.49156	1/2:135:0,66,69:0:0:66,69:2334,2482:-388.777,-202.517,-182.649,-186.613,0,-165.842	1/2:24:0,8,16:0:0:8,16:270,572:-68.5564,-46.7239,-44.3157,-22.1754,0,-17.359	1/2:10:0,2,8:0:0:2,8:72,288:-29.6763,-23.8588,-23.2567,-6.17488,0,-3.76664	1/2:141:0,69,71:0:0:69,71:2376,2533:-396.379,-206.534,-185.762,-189.943,0,-168.57	1/2:77:0,37,40:0:0:37,40:1312,1431:-222.524,-116.84,-105.702,-106.038,0,-93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chr08	7067517	.	T	C	46188.2	PASS	AB=0.512244;ABP=8.2214;AC=37;AF=0.196809;AN=188;AO=2079;CIGAR=1X;DP=11500;DPB=11500;DPRA=1.16532;EPP=4517.5;EPPR=20414.9;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.7292;MQMR=59.6946;NS=94;NUMALT=1;ODDS=9.06979;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73351;QR=335992;RO=9420;RPL=819;RPP=206.142;RPPR=152.763;RPR=1260;RUN=1;SAF=819;SAP=206.142;SAR=1260;SRF=4312;SRP=149.07;SRR=5108;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:79:78,1:78:2792:1:36:0,-20.2604,-245.585	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.794	0/1:177:79,98:79:2840:98:3449:-257.34,0,-202.545	0/0:231:230,1:230:8212:1:36:0,-65.9397,-735.27	0/1:78:46,32:46:1633:32:1111:-76.8131,0,-123.764	0/1:45:25,20:25:888:20:697:-49.5041,0,-66.6884	0/0:145:145,0:145:5175:0:0:0,-43.6493,-465.215	0/0:203:203,0:203:7261:0:0:0,-61.1091,-653.361	0/0:110:110,0:110:3909:0:0:0,-33.1133,-351.761	0/0:103:103,0:103:3679:0:0:0,-31.0061,-331.313	0/0:106:106,0:106:3773:0:0:0,-31.9092,-339.766	0/0:219:218,1:218:7676:1:36:0,-62.3299,-687.046	0/0:166:166,0:166:5918:0:0:0,-49.971,-532.642	0/0:124:124,0:124:4409:0:0:0,-37.3277,-396.976	0/0:171:170,1:170:6086:1:36:0,-47.8779,-544.197	0/0:138:138,0:138:4893:0:0:0,-41.5421,-440.475	0/0:94:94,0:94:3340:0:0:0,-28.2968,-300.738	0/0:116:116,0:116:4168:0:0:0,-34.9195,-375.294	0/0:95:95,0:95:3372:0:0:0,-28.5978,-303.691	0/0:150:150,0:150:5359:0:0:0,-45.1545,-482.362	0/0:206:204,2:204:7251:2:72:0,-55.1755,-645.453	0/1:56:13,43:13:464:43:1514:-119.695,0,-25.2221	0/0:114:114,0:114:4071:0:0:0,-34.3174,-365.947	0/1:117:66,51:66:2351:51:1809:-127.869,0,-176.252	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.452	0/1:294:147,147:147:5263:147:5175:-377.356,0,-385.302	0/1:298:146,152:146:5207:152:5368:-393.459,0,-379.051	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.208	0/0:216:216,0:216:7737:0:0:0,-65.0225,-696.273	0/0:125:119,6:119:4260:6:202:0,-19.1181,-365.066	0/1:117:54,63:54:1923:63:2233:-165.879,0,-138.081	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.176	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:323:322,1:322:11494:1:36:0,-93.6344,-1030.66	0/1:151:62,89:62:2208:89:3140:-237.346,0,-153.521	0/1:107:50,57:50:1770:57:1992:-147.327,0,-127.359	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/1:179:115,64:115:4106:64:2260:-149.764,0,-314.898	0/1:74:43,31:43:1540:31:1108:-77.7514,0,-116.617	0/1:147:64,83:64:2300:83:2947:-221.2,0,-163.008	0/1:150:92,58:92:3270:58:2045:-139.159,0,-249.335	0/0:150:150,0:150:5339:0:0:0,-45.1545,-480.464	0/1:91:36,55:36:1296:55:1910:-144.778,0,-89.5493	0/1:163:69,94:69:2468:94:3336:-251.373,0,-173.267	0/1:159:73,86:73:2624:86:3051:-226.957,0,-188.515	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.437	0/0:167:167,0:167:5978:0:0:0,-50.272,-538.124	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	1/1:12:1,11:1:36:11:392:-32.0218,-0.0140851,0	0/1:188:128,60:128:4560:60:2108:-133.372,0,-353.825	0/1:43:23,20:23:820:20:702:-50.5545,0,-61.1782	0/1:20:8,12:8:288:12:428:-32.8382,0,-20.2468	0/1:196:89,107:89:3188:107:3806:-283.726,0,-228.088	0/1:42:22,20:22:788:20:720:-52.4855,0,-57.6604	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:20:9,11:9:320:11:377:-28.2373,0,-23.1218	0/0:104:104,0:104:3710:0:0:0,-31.3071,-334.1	0/0:144:144,0:144:5152:0:0:0,-43.3483,-462.952	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:172:87,85:87:3120:85:3028:-220.906,0,-228.877	0/0:166:165,1:165:5861:1:36:0,-46.3727,-523.954	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.639	0/0:85:85,0:85:2980:0:0:0,-25.5875,-267.547	0/0:179:179,0:179:6412:0:0:0,-53.8844,-576.848	0/1:113:40,72:40:1432:72:2556:-196.185,0,-95.1025	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.771	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.124	0/0:118:116,2:116:4131:2:72:0,-28.7147,-365.134	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:85:85,0:85:3022:0:0:0,-25.5875,-272.155	0/1:95:44,51:44:1584:51:1786:-132.421,0,-114.25	0/0:159:159,0:159:5683:0:0:0,-47.8638,-510.86	0/0:214:214,0:214:7650:0:0:0,-64.4204,-688.452	0/0:140:140,0:140:5015:0:0:0,-42.1442,-451.362	0/0:207:207,0:207:7377:0:0:0,-62.3132,-663.842	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/0:204:204,0:204:7269:0:0:0,-61.4101,-653.324	0/1:95:51,44:51:1811:44:1543:-110.56,0,-134.663	0/0:218:218,0:218:7766:0:0:0,-65.6245,-698.838	0/0:152:152,0:152:5422:0:0:0,-45.7566,-488.099	0/0:155:155,0:155:5525:0:0:0,-46.6596,-497.346	0/1:130:62,68:62:2194:68:2371:-174.512,0,-158.588	0/0:287:286,1:286:10154:1:36:0,-82.7973,-909.706	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.345	0/1:121:66,55:66:2355:55:1952:-139.52,0,-175.754	0/0:123:123,0:123:4373:0:0:0,-37.0267,-393.535	0/1:80:40,40:40:1418:40:1394:-101.663,0,-103.6	0/1:110:40,70:40:1440:70:2433:-186.096,0,-96.7835	0/1:142:54,88:54:1928:88:3120:-238.276,0,-131.051	0/0:126:126,0:126:4472:0:0:0,-37.9298,-402.646	0/0:250:249,1:249:8884:1:36:0,-71.6592,-795.803
chr08	7067526	.	C	T	261486	PASS	AB=0.488494;ABP=7.60743;AC=151;AF=0.803191;AN=188;AO=9472;CIGAR=1X;DP=11545;DPB=11545;DPRA=0;EPP=20571.2;EPPR=4500.13;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.6822;MQMR=59.8025;NS=94;NUMALT=1;ODDS=9.55002;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=337146;QR=72941;RO=2071;RPL=4320;RPP=161.704;RPPR=227.779;RPR=5152;RUN=1;SAF=4320;SAP=161.704;SAR=5152;SRF=804;SRP=227.779;SRR=1267;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:84:0,83:0:0:83:2951:-263.406,-24.9855,0	1/1:137:0,137:0:0:137:4881:-439.24,-41.2411,0	0/1:174:97,77:97:3402:77:2743:-194.725,0,-254.013	1/1:234:1,233:1:36:233:8297:-741.962,-66.8427,0	0/1:76:32,44:32:1144:44:1584:-119.962,0,-80.3912	0/1:43:19,24:19:680:24:856:-64.4126,0,-48.5849	1/1:148:0,148:0:0:148:5245:-471.522,-44.5524,0	1/1:203:0,203:0:0:203:7255:-652.831,-61.1091,0	1/1:107:0,107:0:0:107:3758:-338.239,-32.2102,0	1/1:101:0,101:0:0:101:3603:-324.477,-30.404,0	1/1:105:0,105:0:0:105:3732:-335.808,-31.6082,0	1/1:214:0,214:0:0:214:7566:-680.563,-64.4204,0	1/1:168:1,167:1:21:167:5930:-531.63,-48.4731,0	1/1:124:0,124:0:0:124:4400:-396.166,-37.3277,0	1/1:173:0,173:0:0:173:6167:-555.085,-52.0782,0	1/1:141:0,141:0:0:141:5002:-450.248,-42.4452,0	1/1:93:0,93:0:0:93:3329:-299.747,-27.9958,0	1/1:114:0,114:0:0:114:4085:-367.828,-34.3174,0	1/1:94:0,94:0:0:94:3359:-302.517,-28.2968,0	1/1:150:0,150:0:0:150:5358:-482.329,-45.1545,0	1/1:211:2,209:2:72:209:7447:-662.871,-56.6806,0	0/1:56:42,14:42:1470:14:500:-28.4713,0,-115.735	1/1:114:0,114:0:0:114:4050:-364.683,-34.3174,0	0/1:121:55,66:55:1959:66:2372:-176.938,0,-140.16	1/1:67:0,67:0:0:67:2393:-215.58,-20.169,0	0/1:292:145,147:145:5107:147:5237:-383.522,0,-371.552	0/1:299:148,151:148:5197:151:5366:-393.048,0,-377.784	1/1:98:0,98:0:0:98:3451:-310.794,-29.5009,0	1/1:219:0,219:0:0:219:7843:-705.81,-65.9256,0	1/1:130:6,124:6:197:124:4333:-371.666,-21.0826,0	0/1:114:62,52:62:2183:52:1868:-134.037,0,-162.416	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:12:0,12:0:0:12:432:-39.176,-3.61236,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:331:0,331:0:0:331:11819:-1063.51,-99.6409,0	0/1:154:92,62:92:3286:62:2174:-149.556,0,-249.509	0/1:105:57,48:57:1987:48:1715:-123.022,0,-147.49	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:177:64,113:64:2274:113:3996:-305.915,0,-151.626	0/1:73:31,42:31:1099:42:1489:-112.328,0,-77.2409	0/1:148:82,66:82:2859:66:2368:-168.825,0,-212.977	0/1:154:61,93:61:2113:93:3306:-251.37,0,-144.061	1/1:150:1,149:1:36:149:5305:-472.979,-41.5562,0	0/1:91:55,36:55:1890:36:1279:-88.0178,0,-142.971	0/1:165:97,68:97:3431:68:2429:-169.171,0,-259.33	0/1:155:83,72:83:2949:72:2572:-185.065,0,-218.983	1/1:102:0,102:0:0:102:3646:-328.344,-30.7051,0	1/1:165:0,165:0:0:165:5915:-532.456,-49.67,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/1:187:61,126:61:2141:126:4516:-350.173,0,-136.455	0/1:41:19,22:19:667:22:788:-58.9026,0,-48.0124	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	0/1:199:109,90:109:3840:90:3207:-228.895,0,-285.881	0/1:41:20,21:20:720:21:756:-54.7446,0,-52.7865	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	0/1:19:11,8:11:387:8:288:-20.5478,0,-29.4464	1/1:107:0,107:0:0:107:3763:-338.869,-32.2102,0	1/1:143:0,143:0:0:143:5065:-455.861,-43.0473,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:174:87,87:87:3064:87:3108:-227.471,0,-223.582	1/1:168:1,167:1:36:167:5934:-530.532,-46.9748,0	1/1:64:0,64:0:0:64:2283:-205.63,-19.2659,0	1/1:86:0,86:0:0:86:3028:-272.735,-25.8886,0	1/1:177:0,177:0:0:177:6243:-561.934,-53.2823,0	0/1:110:71,39:71:2518:39:1389:-91.9669,0,-193.755	1/1:65:0,65:0:0:65:2320:-209.058,-19.567,0	1/1:74:0,74:0:0:74:2660:-239.639,-22.2762,0	1/1:118:1,117:1:36:117:4186:-373.281,-31.9233,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:84:0,84:0:0:84:2978:-268.219,-25.2865,0	0/1:96:49,47:49:1728:47:1669:-121.594,0,-126.867	1/1:159:1,157:1:32:157:5599:-500.826,-44.6258,0	1/1:216:0,216:0:0:216:7708:-693.714,-65.0225,0	1/1:141:0,141:0:0:141:5013:-451.156,-42.4452,0	1/1:207:0,207:0:0:207:7408:-666.676,-62.3132,0	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	1/1:203:0,203:0:0:203:7249:-651.513,-61.1091,0	0/1:97:42,55:42:1500:55:1972:-148.543,0,-106.091	1/1:222:0,222:0:0:222:7882:-708.967,-66.8287,0	1/1:154:0,154:0:0:154:5483:-493.587,-46.3586,0	1/1:158:0,158:0:0:158:5614:-505.355,-47.5627,0	0/1:128:66,62:66:2284:62:2212:-160.813,0,-167.285	1/1:288:0,288:0:0:288:10205:-918.335,-86.6966,0	1/1:72:0,72:0:0:72:2551:-229.837,-21.6742,0	0/1:121:55,66:55:1928:66:2340:-174.37,0,-137.366	1/1:124:0,124:0:0:124:4427:-398.216,-37.3277,0	0/1:80:38,42:38:1343:42:1467:-108.222,0,-97.0851	0/1:114:70,44:70:2457:44:1552:-105.158,0,-187.049	0/1:141:88,53:88:3112:53:1895:-128.382,0,-237.856	1/1:126:0,126:0:0:126:4495:-404.713,-37.9298,0	1/1:251:1,250:1:36:250:8893:-796.729,-71.9603,0
chr08	7096289	.	TGTG	CGTG	107662	PASS	AB=0.466369;ABP=38.2102;AC=151;AF=0.803191;AN=188;AO=8361;CIGAR=1X3M;DP=10327;DPB=10327;DPRA=111.032;EPP=18028.6;EPPR=4148.37;GTI=1;LEN=1;MEANALT=1.43011;MQM=28.7679;MQMR=30.1367;NS=94;NUMALT=1;ODDS=1.12127;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240346;QR=67803;RO=1917;RPL=15;RPP=18028.6;RPPR=4148.37;RPR=8346;RUN=1;SAF=0;SAP=18158.7;SAR=8361;SRF=0;SRP=4165.72;SRR=1917;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1361:-110.22,-14.1484,0	1/1:143:0,142:0:0:142:4115:-331.953,-42.7463,0	0/1:128:76,52:76:2676:52:1503:-82.9221,0,-162.64	1/1:222:0,222:0:0:222:6415:-517.599,-66.8287,0	0/1:38:19,18:19:675:18:520:-30.7887,0,-38.203	0/1:68:32,32:32:1123:32:924:-55.2196,0,-65.2624	1/1:161:0,157:0:0:157:4529:-365.277,-47.2617,0	1/1:159:0,159:0:0:159:4592:-370.957,-47.8638,0	1/1:120:0,120:0:0:120:3471:-280.248,-36.1236,0	1/1:106:0,106:0:0:106:3048:-246.047,-31.9092,0	1/1:114:1,113:1:36:113:3260:-260.329,-31.4147,0	1/1:94:1,93:1:36:93:2686:-214.138,-25.3161,0	1/1:110:0,110:0:0:110:3189:-256.988,-33.1133,0	1/1:137:0,136:0:0:136:3903:-315.093,-40.9401,0	1/1:82:0,82:0:0:82:2368:-190.678,-24.6845,0	1/1:64:0,64:0:0:64:1843:-148.805,-19.2659,0	1/1:109:0,109:0:0:109:3156:-254.875,-32.8123,0	1/1:78:0,77:0:0:77:2219:-179.18,-23.1793,0	1/1:90:0,89:0:0:89:2572:-207.376,-26.7917,0	1/1:218:2,213:2:66:213:6150:-490.299,-59.6648,0	1/1:125:0,124:0:0:124:3556:-287.003,-37.3277,0	0/1:103:72,31:72:2565:31:868:-38.9747,0,-155.768	1/1:139:0,139:0:0:139:4017:-324.165,-41.8432,0	0/1:160:65,95:65:2257:95:2745:-173.51,0,-118.924	1/1:94:0,94:0:0:94:2704:-218.468,-28.2968,0	0/1:278:136,142:136:4811:142:3979:-236.288,0,-268.8	0/1:184:101,83:101:3543:83:2399:-138.393,0,-205.192	1/1:69:0,68:0:0:68:1966:-157.795,-20.47,0	1/1:215:0,214:0:0:214:5998:-481.521,-64.4204,0	1/1:115:1,113:1:36:113:3259:-260.332,-31.6922,0	0/1:192:85,106:85:3012:106:3056:-188.99,0,-163.178	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.90276	1/1:8:0,8:0:0:8:228:-18.6098,-2.40824,0	0/1:6:2,4:2:72:4:116:-7.81102,0,-3.85725	1/1:5:0,5:0:0:5:145:-11.9565,-1.50515,0	1/1:11:0,11:0:0:11:320:-26.0833,-3.31133,0	1/1:249:1,245:1:36:245:6833:-547.402,-71.8331,0	0/1:170:88,82:88:3126:82:2371:-140.279,0,-177.24	0/1:107:63,44:63:2233:44:1278:-71.1601,0,-135.53	1/1:4:0,4:0:0:4:116:-9.6172,-1.20412,0	0/1:169:94,75:94:3356:75:2164:-123.844,0,-193.945	0/1:44:31,13:31:1104:13:377:-17.4258,0,-67.7201	0/1:83:44,39:44:1554:39:1125:-65.9669,0,-89.4634	0/1:118:59,59:59:2101:59:1696:-101.59,0,-117.998	1/1:101:0,101:0:0:101:2906:-234.461,-30.404,0	0/1:115:69,45:69:2451:45:1258:-66.7452,0,-144.777	0/1:138:75,62:75:2652:62:1794:-103.527,0,-156.457	0/1:176:99,76:99:3508:76:2198:-124.617,0,-204.317	1/1:115:1,114:1:36:114:3289:-262.509,-31.7157,0	1/1:135:0,131:0:0:131:3780:-305.013,-39.4349,0	1/1:187:0,187:0:0:187:5238:-421.187,-56.2926,0	0/1:3:2,1:2:72:1:29:-1.69615,0,-4.61216	0/1:113:57,56:57:2015:56:1619:-96.2882,0,-117.383	0/1:81:46,35:46:1635:35:981:-54.6851,0,-94.5827	0/1:6:2,4:2:64:4:117:-7.90347,0,-3.51814	0/1:99:45,54:45:1594:54:1551:-95.1426,0,-87.2321	0/1:54:25,29:25:892:29:837:-51.4835,0,-49.176	1/1:2:0,2:0:0:2:56:-4.7487,-0.60206,0	0/1:12:7,5:7:245:5:140:-7.88449,0,-14.4125	1/1:131:0,131:0:0:131:3774:-304.541,-39.4349,0	1/1:185:3,181:3:100:181:5225:-413.184,-47.8812,0	1/1:11:0,11:0:0:11:319:-25.9924,-3.31133,0	0/1:147:68,75:68:2416:75:2090:-124.942,0,-133.538	1/1:245:1,243:1:36:243:7030:-563.869,-70.8261,0	1/1:88:3,85:3:108:85:2455:-190.154,-18.3629,0	1/1:67:0,67:0:0:67:1931:-155.913,-20.169,0	1/1:205:1,203:1:30:203:5862:-470.288,-58.9659,0	0/1:114:79,35:79:2777:35:1007:-47.0971,0,-168.477	1/1:63:0,62:0:0:62:1787:-144.047,-18.6639,0	1/1:113:1,111:1:36:111:3214:-256.518,-31.0205,0	1/1:117:0,116:0:0:116:3245:-260.668,-34.9195,0	1/1:19:0,19:0:0:19:550:-44.6165,-5.71957,0	1/1:145:1,142:1:34:142:4112:-329.241,-40.405,0	0/1:67:30,36:30:1074:36:1039:-63.8832,0,-60.4856	1/1:244:0,244:0:0:244:7031:-566.755,-73.4513,0	1/1:164:0,164:0:0:164:4737:-382.198,-49.3689,0	1/1:89:0,87:0:0:87:2514:-202.777,-26.1896,0	1/1:77:0,77:0:0:77:2230:-180.277,-23.1793,0	0/1:7:3,4:3:108:4:116:-7.50999,0,-6.2389	1/1:79:0,79:0:0:79:2283:-184.346,-23.7814,0	0/1:86:51,35:51:1792:35:1014:-56.1573,0,-109.424	1/1:239:0,239:0:0:239:6891:-556.023,-71.9462,0	1/1:108:0,107:0:0:107:3077:-248.273,-32.2102,0	1/1:89:0,89:0:0:89:2567:-207.199,-26.7917,0	0/1:106:52,54:52:1848:54:1535:-92.3185,0,-103.335	1/1:178:0,178:0:0:178:5135:-414.442,-53.5833,0	1/1:59:0,59:0:0:59:1704:-137.649,-17.7608,0	0/1:88:45,43:45:1594:43:1251:-74.2929,0,-93.4493	1/1:117:1,116:1:36:116:3341:-266.783,-32.2398,0	0/1:92:38,54:38:1345:54:1551:-97.7202,0,-70.9669	0/1:139:71,68:71:2498:68:1957:-116.299,0,-142.303	0/1:92:67,25:67:2353:25:722:-30.7772,0,-144.266	1/1:143:0,141:0:0:141:4072:-328.422,-42.4452,0	1/1:140:0,140:0:0:140:4045:-326.494,-42.1442,0
chr08	7155597	.	T	C	14069.3	PASS	AB=0.573436;ABP=69.6667;AC=35;AF=0.18617;AN=188;AO=823;CIGAR=1X;DP=3498;DPB=3498;DPRA=1.17251;EPP=1790.13;EPPR=5798.67;GTI=1;LEN=1;MEANALT=1.02564;MQM=60;MQMR=59.997;NS=94;NUMALT=1;ODDS=0.0329957;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29435;QR=95458;RO=2673;RPL=823;RPP=1790.13;RPPR=5798.67;RPR=0;RUN=1;SAF=0;SAP=1790.13;SAR=823;SRF=0;SRP=5807.36;SRR=2673;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/1:80:28,52:28:1004:52:1868:-144.317,0,-66.5935	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:27:11,16:11:384:16:576:-44.0472,0,-26.7669	0/1:23:15,8:15:532:8:288:-19.3437,0,-41.2894	0/0:51:50,1:50:1796:1:36:0,-11.7543,-158.324	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/0:45:43,2:43:1540:2:72:0,-6.70963,-132.056	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/0:14:13,0:13:468:0:0:0,-3.91339,-42.0998	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.658	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/1:32:10,22:10:356:22:792:-61.9727,0,-22.7483	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:45:26,19:26:928:19:676:-47.6216,0,-70.2919	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:93:26,67:26:928:67:2412:-189.34,0,-55.8425	0/1:76:33,43:33:1169:43:1533:-115.384,0,-82.637	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:93:93,0:93:3313:0:0:0,-27.9958,-298.388	0/0:26:26,0:26:898:0:0:0,-7.82678,-81.1297	0/1:68:27,41:27:968:41:1461:-111.315,0,-66.9673	0/1:16:13,3:13:460:3:108:-5.25869,0,-36.9189	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:51:22,28:22:792:28:1004:-75.3417,0,-56.2707	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:56:32,24:32:1148:24:860:-60.8642,0,-86.7722	0/1:19:12,7:12:424:7:244:-16.5799,0,-32.7768	0/1:107:43,64:43:1544:64:2300:-175.051,0,-107.043	0/1:20:14,6:14:492:6:216:-13.7699,0,-38.5917	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:45:20,25:20:701:25:892:-67.0533,0,-49.8654	0/1:46:13,33:13:460:33:1175:-92.2096,0,-27.888	0/1:61:34,27:34:1216:27:968:-69.0745,0,-91.3837	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.372	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	0/1:39:17,22:17:608:22:792:-59.8655,0,-43.3119	0/1:15:10,5:10:360:5:176:-11.6696,0,-28.2289	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/1:47:15,32:15:540:32:1148:-89.4814,0,-34.7881	0/1:43:18,25:18:644:25:896:-68.0161,0,-45.3463	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:13:7,6:7:248:6:212:-15.5114,0,-18.7508	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:92:32,60:32:1152:60:2130:-164.274,0,-76.2954	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:18:17,1:17:604:1:36:0,-1.82026,-51.0923	0/0:51:48,3:48:1716:3:104:0,-5.64972,-145.023	0/1:69:11,58:11:396:58:2084:-167.059,0,-15.2117	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2824	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.827	0/1:53:27,26:27:972:26:936:-68.6049,0,-71.8433	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.916	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/1:43:12,31:12:424:31:1105:-86.816,0,-25.5521	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.97	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:26:12,14:12:432:14:496:-37.1475,0,-31.3944	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	0/1:42:29,13:29:1040:13:460:-29.0921,0,-81.2711	0/1:17:8,9:8:288:9:315:-23.5697,0,-21.1499	0/0:46:46,0:46:1610:0:0:0,-13.8474,-145.185	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705
chr08	7164691	.	G	A	17202.8	PASS	AB=0.404467;ABP=226.64;AC=35;AF=0.18617;AN=188;AO=1148;CIGAR=1X;DP=8592;DPB=8592;DPRA=0.991036;EPP=2495.86;EPPR=16102.4;GTI=3;LEN=1;MEANALT=1;MQM=59.6054;MQMR=59.9673;NS=94;NUMALT=1;ODDS=0.660328;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41112;QR=266159;RO=7442;RPL=0;RPP=2495.86;RPPR=16111;RPR=1148;RUN=1;SAF=1148;SAP=2495.86;SAR=0;SRF=7441;SRP=16154.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/0:108:108,0:108:3849:0:0:0,-32.5112,-346.606	0/1:65:51,14:51:1817:14:500:-25.7446,0,-144.242	0/0:226:225,0:225:8017:0:0:0,-67.7317,-721.192	0/1:54:34,20:34:1224:20:720:-48.8685,0,-94.2114	0/1:39:17,22:17:608:22:777:-58.5014,0,-43.3119	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.844	0/0:169:169,0:169:6057:0:0:0,-50.8741,-545.222	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.424	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	0/0:111:111,0:111:3983:0:0:0,-33.4143,-358.658	0/0:77:77,0:77:2749:0:0:0,-23.1793,-247.651	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:109:109,0:109:3905:0:0:0,-32.8123,-351.641	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.14	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.903	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:138:138,0:138:4968:0:0:0,-41.5421,-447.176	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/1:44:14,30:14:504:30:1076:-83.9066,0,-32.4528	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:162:104,58:104:3725:58:2061:-136.972,0,-286.682	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.145	0/1:290:186,104:186:6656:104:3725:-248.145,0,-511.819	0/1:222:127,95:127:4536:95:3405:-239.819,0,-341.58	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.422	0/0:225:225,0:225:7999:0:0:0,-67.7317,-719.93	0/0:114:111,3:111:3981:3:104:0,-24.6146,-348.775	0/1:97:61,36:61:2177:36:1296:-87.1138,0,-166.995	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55117	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:224:223,1:223:8000:1:36:0,-63.8324,-716.421	0/1:125:62,63:62:2228:63:2264:-166.384,0,-163.155	0/1:89:45,44:45:1612:44:1580:-115.669,0,-118.578	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:72:46,26:46:1637:26:936:-62.8761,0,-125.943	0/1:27:17,10:17:612:10:360:-24.6118,0,-47.2856	0/1:116:73,43:73:2620:43:1536:-103.344,0,-201.128	0/1:89:38,51:38:1368:51:1824:-137.642,0,-96.6292	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/1:119:80,39:80:2872:39:1398:-90.2066,0,-222.893	0/1:65:45,20:45:1612:20:720:-45.5536,0,-125.803	0/1:115:97,18:97:3480:18:648:-24.0311,0,-278.792	0/0:168:168,0:168:5986:0:0:0,-50.573,-538.846	0/0:115:115,0:115:4068:0:0:0,-34.6184,-366.304	0/0:203:202,0:202:7233:0:0:0,-60.8081,-650.662	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:77:45,32:45:1616:32:1148:-80.4424,0,-122.551	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:74:51,23:51:1808:23:828:-52.5448,0,-140.715	0/1:24:7,17:7:252:17:612:-48.1887,0,-15.8042	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:25:18,7:18:648:7:252:-15.5032,0,-51.1261	0/0:54:54,0:54:1895:0:0:0,-16.2556,-169.546	0/0:134:134,0:134:4811:0:0:0,-40.338,-433.143	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/1:149:82,67:82:2914:67:2404:-171.761,0,-217.639	0/0:182:180,2:180:6415:2:72:0,-47.9507,-570.599	0/0:121:121,0:121:4314:0:0:0,-36.4246,-388.434	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.603	0/0:157:157,0:157:5617:0:0:0,-47.2617,-505.65	0/1:85:29,56:29:1044:56:1997:-154.41,0,-68.6873	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:96:96,0:96:3437:0:0:0,-28.8989,-309.541	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3731	0/0:99:99,0:99:3529:0:0:0,-29.802,-317.819	0/1:70:48,22:48:1728:22:788:-50.1645,0,-134.725	0/0:215:215,0:215:7636:0:0:0,-64.7214,-687.277	0/0:205:204,1:204:7313:1:36:0,-58.1129,-654.619	0/0:110:110,0:110:3926:0:0:0,-33.1133,-353.53	0/0:137:137,0:137:4899:0:0:0,-41.2411,-441.062	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:92:92,0:92:3289:0:0:0,-27.6948,-296.228	0/1:64:46,18:46:1656:18:633:-38.0209,0,-130.062	0/0:160:160,0:160:5699:0:0:0,-48.1648,-513.026	0/0:131:131,0:131:4703:0:0:0,-39.4349,-423.428	0/0:82:82,0:82:2933:0:0:0,-24.6845,-263.713	0/1:109:58,51:58:2084:51:1817:-130.982,0,-155.018	0/0:137:137,0:137:4932:0:0:0,-41.2411,-443.999	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:64:36,28:36:1292:28:995:-70.5935,0,-97.3178	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/1:63:34,29:34:1220:29:1044:-75.2991,0,-91.1419	0/1:112:65,47:65:2328:47:1684:-118.119,0,-176.065	0/1:48:25,23:25:896:23:828:-60.3923,0,-66.5109	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.732
chr08	7164706	.	T	A	20662.4	PASS	AB=0.39725;ABP=256.472;AC=35;AF=0.18617;AN=188;AO=1103;CIGAR=1X;DP=8485;DPB=8485;DPRA=0.921758;EPP=943.026;EPPR=4668.09;GTI=4;LEN=1;MEANALT=1.05263;MQM=59.6174;MQMR=59.9753;NS=94;NUMALT=1;ODDS=0.0695954;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39212;QR=264472;RO=7377;RPL=206;RPP=943.026;RPPR=4672.78;RPR=897;RUN=1;SAF=1103;SAP=2398.14;SAR=0;SRF=7376;SRP=16013.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:108:108,0:108:3865:0:0:0,-32.5112,-348.043	0/1:65:52,13:52:1868:13:468:-22.8681,0,-148.832	0/0:221:221,0:221:7919:0:0:0,-66.5276,-712.733	0/1:53:34,19:34:1224:19:684:-45.9311,0,-94.5125	0/1:38:18,20:18:648:20:716:-53.3204,0,-47.2127	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.8	0/0:168:168,0:168:5998:0:0:0,-50.573,-539.913	0/0:110:109,0:109:3903:0:0:0,-32.8123,-351.095	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/0:111:111,0:111:3992:0:0:0,-33.4143,-359.468	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/0:108:108,0:108:3875:0:0:0,-32.5112,-348.943	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.766	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:138:138,0:138:4951:0:0:0,-41.5421,-445.648	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.088	0/1:44:15,29:15:540:29:1021:-78.954,0,-35.6912	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.641	0/1:162:105,57:105:3750:57:2033:-134.46,0,-288.933	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.089	0/1:286:186,100:186:6664:100:3550:-233.608,0,-513.737	0/1:217:123,94:123:4407:94:3357:-237.007,0,-331.478	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:221:220,0:220:7883:0:0:0,-66.2266,-709.135	0/0:118:115,3:115:4127:3:104:0,-25.8187,-361.91	0/1:95:60,35:60:2148:35:1260:-84.4773,0,-164.99	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.92504	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:217:217,0:217:7765:0:0:0,-65.3235,-698.877	0/1:126:63,63:63:2268:63:2245:-164.374,0,-166.452	0/1:86:44,42:44:1569:42:1473:-106.943,0,-115.611	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:71:45,26:45:1612:26:914:-61.2003,0,-123.997	0/1:25:15,10:15:536:10:352:-24.4878,0,-41.0491	0/1:113:71,42:71:2552:42:1504:-101.374,0,-195.914	0/1:88:40,48:40:1427:48:1702:-126.969,0,-102.236	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:116:78,38:78:2787:38:1356:-87.3306,0,-216.151	0/1:62:42,18:42:1497:18:648:-40.2221,0,-116.601	0/1:111:96,15:96:3444:15:536:-15.1581,0,-276.758	0/0:167:167,0:167:5987:0:0:0,-50.272,-538.934	0/0:114:114,0:114:4087:0:0:0,-34.3174,-368.015	0/0:203:203,0:203:7295:0:0:0,-61.1091,-656.596	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:75:43,31:43:1544:31:1108:-77.3869,0,-116.617	0/1:39:23,16:23:824:16:576:-40.4348,0,-62.7431	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:73:50,23:50:1796:23:816:-51.7681,0,-139.947	0/1:24:7,17:7:252:17:604:-47.4659,0,-15.8042	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:24:18,6:18:648:6:212:-12.2001,0,-51.4272	0/0:53:53,0:53:1899:0:0:0,-15.9546,-169.911	0/0:134:134,0:134:4792:0:0:0,-40.338,-431.434	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:147:82,65:82:2944:65:2309:-163.818,0,-220.942	0/0:182:181,1:181:6492:1:36:0,-51.1892,-580.765	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:166:166,0:166:5960:0:0:0,-49.971,-536.505	0/1:79:29,50:29:1044:50:1750:-133.992,0,-70.4934	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/0:97:97,0:97:3469:0:0:0,-29.1999,-312.42	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/1:65:46,19:46:1638:19:680:-41.954,0,-128.14	0/0:211:211,0:211:7563:0:0:0,-63.5173,-680.708	0/0:201:200,1:200:7188:1:36:0,-56.9088,-643.373	0/0:111:111,0:111:3987:0:0:0,-33.4143,-359.018	0/0:136:136,0:136:4888:0:0:0,-40.9401,-440.07	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.607	0/1:63:45,18:45:1612:18:640:-38.9562,0,-126.405	0/0:160:160,0:160:5736:0:0:0,-48.1648,-516.355	0/0:127:127,0:127:4563:0:0:0,-38.2308,-410.833	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.006	0/1:109:58,51:58:2084:51:1826:-131.797,0,-155.018	0/0:136:136,0:136:4852:0:0:0,-40.9401,-436.805	0/0:32:32,0:32:1137:0:0:0,-9.63296,-102.637	0/1:62:36,26:36:1288:26:919:-64.3508,0,-97.5597	0/0:88:88,0:88:3151:0:0:0,-26.4906,-283.814	0/1:62:33,29:33:1188:29:1013:-72.8047,0,-88.5647	0/1:110:64,46:64:2295:46:1640:-114.763,0,-173.697	0/1:47:26,21:26:936:21:728:-51.6869,0,-70.4111	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.97
chr08	7179317	.	TTTGA	TTTGG,ATTGG	67299.5	PASS	AB=0.507014,0.48998;ABP=3.43676,3.88063;AC=158,30;AF=0.840426,0.159574;AN=188;AO=2562,497;CIGAR=4M1X,1X3M1X;DP=3071;DPB=3071.2;DPRA=0,1.12181;EPP=5557.64,1082.23;EPPR=7.35324;GTI=2;LEN=1,5;MEANALT=1.48936,2.08108;MQM=59.9715,59.6479;MQMR=60;NS=94;NUMALT=2;ODDS=0.232852;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=91731,17545;QR=72;RO=2;RPL=2562,497;RPP=5566.32,1082.23;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=1,0;SAP=5557.64,1082.23;SAR=2561,497;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/2:36:0,13,23:0:0:13,23:468,790:-102.658,-64.479,-60.5656,-38.5324,0,-31.6087	1/1:63:0,63,0:0:0:63,0:2264,0:-204.022,-18.9649,0,-204.022,-18.9649,-204.022	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:37:0,37,0:0:0:37,0:1324,0:-119.456,-11.1381,0,-119.456,-11.1381,-119.456	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:25:0,25,0:0:0:25,0:892,0:-80.5997,-7.52575,0,-80.5997,-7.52575,-80.5997	1/1:44:0,44,0:0:0:44,0:1576,0:-142.132,-13.2453,0,-142.132,-13.2453,-142.132	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/1:39:0,39,0:0:0:39,0:1392,0:-125.579,-11.7402,0,-125.579,-11.7402,-125.579	1/1:42:0,42,0:0:0:42,0:1512,0:-136.375,-12.6433,0,-136.375,-12.6433,-136.375	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/1:38:0,38,0:0:0:38,0:1364,0:-123.055,-11.4391,0,-123.055,-11.4391,-123.055	1/1:29:0,29,0:0:0:29,0:1032,0:-93.1935,-8.72987,0,-93.1935,-8.72987,-93.1935	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/1:89:0,89,0:0:0:89,0:3192,0:-287.503,-26.7917,0,-287.503,-26.7917,-287.503	1/2:8:0,6,2:0:0:6,2:216,72:-23.8592,-6.23466,-4.42848,-17.9843,0,-17.3823	1/1:25:0,25,0:0:0:25,0:892,0:-80.5997,-7.52575,0,-80.5997,-7.52575,-80.5997	1/2:16:0,10,6:0:0:10,6:360,208:-46.6353,-17.2528,-14.2425,-29.734,0,-27.9278	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:73:1,40,31:1:36:40,31:1432,1091:-202.342,-85.8608,-76.7573,-113.839,0,-107.445	1/2:64:0,38,26:0:0:38,26:1352,894:-183.13,-72.9373,-61.4981,-110.541,0,-102.714	1/1:23:0,21,0:0:0:21,0:756,0:-68.0119,-6.32163,0,-68.0119,-6.32163,-68.0119	1/1:69:0,68,0:0:0:68,0:2440,0:-219.513,-20.47,0,-219.513,-20.47,-219.513	1/1:27:0,25,1:0:0:25,1:885,36:-79.608,-7.52575,0,-76.6704,-4.58833,-76.3693	1/2:45:0,22,23:0:0:22,23:780,817:-130.467,-66.9217,-60.2991,-63.9004,0,-56.9767	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:40:0,40,0:0:0:40,0:1440,0:-129.898,-12.0412,0,-129.898,-12.0412,-129.898	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:32:0,32,0:0:0:32,0:1144,0:-103.27,-9.63296,0,-103.27,-9.63296,-103.27	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:104:0,104,0:0:0:104,0:3740,0:-336.797,-31.3071,0,-336.797,-31.3071,-336.797	1/2:18:0,11,7:0:0:11,7:396,241:-52.2393,-19.9181,-16.6068,-32.6714,0,-30.5642	1/2:18:0,7,11:0:0:7,11:252,384:-52.1492,-31.5831,-29.4759,-20.9217,0,-17.6104	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:28:0,15,13:0:0:15,13:540,467:-82.5175,-38.4558,-33.9404,-44.4211,0,-40.5077	1/2:17:0,11,6:0:0:11,6:396,215:-50.201,-17.8883,-14.577,-32.6714,0,-30.8652	1/2:18:0,13,5:0:0:13,5:464,172:-52.149,-14.3123,-10.3989,-38.1841,0,-36.679	1/2:32:1,16,15:1:36:16,15:576,529:-86.8304,-40.129,-38.2504,-44.0613,0,-42.4832	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	1/2:12:0,6,6:0:0:6,6:216,216:-35.6088,-17.9843,-16.1782,-17.9843,0,-16.1782	1/2:15:0,10,5:0:0:10,5:356,171:-43.2453,-14.2208,-11.2105,-29.3709,0,-27.8658	1/2:32:0,16,16:0:0:16,16:576,574:-93.8174,-46.8181,-42.0017,-46.9987,0,-42.1822	1/1:33:0,32,0:0:0:32,0:1144,0:-103.049,-9.63296,0,-103.049,-9.63296,-103.049	1/1:58:0,58,0:0:0:58,0:2076,0:-187.111,-17.4597,0,-187.111,-17.4597,-187.111	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/1:12:0,11,1:0:0:11,1:396,36:-35.6229,-3.31133,0,-32.6855,-0.0140851,-32.3845	1/2:19:0,4,15:0:0:4,15:144,534:-55.6224,-43.8718,-42.6677,-12.1095,0,-7.59405	1/2:11:0,8,3:0:0:8,3:284,101:-31.6724,-8.51875,-6.11051,-23.4951,0,-22.592	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:26:0,17,9:0:0:17,9:596,322:-75.1101,-26.6149,-21.4974,-48.8503,0,-46.141	1/2:5:0,4,1:0:0:4,1:140,31:-14.221,-2.79842,-1.5943,-11.7405,0,-11.4394	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:6:0,3,3:0:0:3,3:104,105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chr08	7197035	.	T	A	24179	PASS	AB=0.519132;ABP=11.6514;AC=37;AF=0.196809;AN=188;AO=1430;CIGAR=1X;DP=7571;DPB=7571;DPRA=1.06503;EPP=3108.22;EPPR=13333.7;GTI=2;LEN=1;MEANALT=1.02326;MQM=59.8881;MQMR=59.9767;NS=94;NUMALT=1;ODDS=0.997418;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51251;QR=220099;RO=6139;RPL=0;RPP=3108.22;RPPR=13333.7;RPR=1430;RUN=1;SAF=1430;SAP=3108.22;SAR=0;SRF=6139;SRP=13333.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1197:0:0:0,-10.235,-108.033	0/0:163:163,0:163:5844:0:0:0,-49.0679,-526.071	0/1:135:65,70:65:2336:70:2503:-184.884,0,-169.86	0/0:231:231,0:231:8296:0:0:0,-69.5379,-746.645	0/1:29:20,9:20:716:9:324:-20.776,0,-56.0378	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:93:91,2:91:3264:2:72:0,-21.1591,-287.135	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.102	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.249	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:49:48,1:48:1720:1:36:0,-11.1522,-151.487	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:189:189,0:189:6780:0:0:0,-56.8947,-610.271	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/1:96:41,55:41:1468:55:1964:-148.136,0,-103.517	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:124:70,54:70:2504:54:1936:-137.189,0,-188.285	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:278:148,130:148:5312:130:4648:-334.796,0,-394.526	0/1:141:68,73:68:2436:73:2620:-193.568,0,-177.05	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:314:314,0:314:11252:0:0:0,-94.5234,-1012.19	0/0:119:117,2:117:4200:2:72:0,-28.9858,-371.342	0/1:85:31,54:31:1108:54:1932:-148.569,0,-74.4434	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:158:158,0:158:5660:0:0:0,-47.5627,-509.519	0/1:95:48,47:48:1720:47:1688:-123.606,0,-126.488	0/1:33:20,12:20:720:12:428:-28.8437,0,-55.136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:140:60,80:60:2160:80:2879:-217.012,0,-152.522	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/1:125:41,84:41:1472:84:3016:-234.005,0,-95.1474	0/1:69:38,31:38:1364:31:1116:-79.9806,0,-102.29	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.233	0/1:96:54,42:54:1940:42:1500:-106.396,0,-145.977	0/1:69:31,38:31:1089:38:1352:-101.209,0,-77.5462	0/1:153:65,88:65:2332:88:3164:-238.906,0,-163.455	0/0:140:140,0:140:5008:0:0:0,-42.1442,-450.868	0/0:100:99,1:99:3552:1:32:0,-26.9037,-316.688	0/0:212:211,1:211:7560:1:36:0,-60.2201,-676.841	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:108:51,57:51:1832:57:2048:-152.08,0,-132.65	0/1:27:20,7:20:716:7:252:-14.9011,0,-56.6399	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	0/1:106:55,51:55:1965:51:1836:-133.611,0,-145.214	0/1:27:15,12:15:536:12:428:-30.731,0,-40.447	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.108	0/0:112:111,0:111:3984:0:0:0,-33.4143,-358.389	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:179:78,101:78:2800:101:3621:-272.097,0,-198.355	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:77:77,0:77:2741:0:0:0,-23.1793,-246.931	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:180:175,5:175:6272:5:180:0,-37.6333,-548.021	0/1:98:31,67:31:1112:67:2396:-186.396,0,-70.8904	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.745	0/1:65:27,38:27:972:38:1368:-103.854,0,-68.231	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:170:170,0:170:6096:0:0:0,-51.1751,-548.74	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/0:108:104,4:104:3736:4:144:0,-19.1976,-323.126	0/1:6:5,1:5:180:1:31:-1.29327,0,-14.7459	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.913	0/1:105:68,37:68:2440:37:1332:-88.5742,0,-188.247	0/0:199:199,0:199:7148:0:0:0,-59.905,-643.374	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:70:34,36:34:1224:36:1284:-94.7546,0,-89.3949	0/0:144:144,0:144:5180:0:0:0,-43.3483,-466.292	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:59:32,27:32:1148:27:972:-70.0371,0,-85.8691	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/1:55:26,29:26:917:29:1025:-76.0039,0,-66.288	0/1:47:15,32:15:540:32:1148:-89.4814,0,-34.7881	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763
chr08	7198860	.	CTA	GTC,CTC	274243	PASS	AB=0.482599,0.514987;ABP=16.0841,12.7083;AC=152,36;AF=0.808511,0.191489;AN=188;AO=10175,2576;CIGAR=1X1M1X,2M1X;DP=12777;DPB=12777.3;DPRA=0,1.45559;EPP=22097.7,5596.72;EPPR=0;GTI=0;LEN=3,1;MEANALT=1.73404,2.30435;MQM=59.9857,59.9507;MQMR=0;NS=94;NUMALT=2;ODDS=3.84696;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=68,0;PQR=0;PRO=0;QA=358626,91641;QR=0;RO=0;RPL=10175,2576;RPP=22097.7,5596.72;RPPR=0;RPR=0,0;RUN=1,1;SAF=10175,2576;SAP=22097.7,5596.72;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45,0:0:0:45,0:1558,0:-140.507,-13.5464,0,-140.507,-13.5464,-140.507	1/1:216:0,216,0:0:0:216,0:7633,0:-687.014,-65.0225,0,-687.014,-65.0225,-687.014	1/2:214:0,101,113:0:0:101,113:3521,3990:-611.618,-325.273,-294.869,-286.696,0,-252.679	1/1:416:0,415,1:0:0:415,1:14591,36:-1312.6,-124.927,0,-1309.66,-121.63,-1309.36	1/2:74:0,38,36:0:0:38,36:1349,1243:-211.252,-101.331,-89.8919,-110.271,0,-99.4334	1/2:61:0,36,25:0:0:36,25:1244,891:-174.052,-72.983,-62.1459,-101.421,0,-93.8952	1/1:156:0,156,0:0:0:156,0:5538,0:-498.547,-46.9607,0,-498.547,-46.9607,-498.547	1/1:275:0,275,0:0:0:275,0:9626,0:-866.313,-82.7833,0,-866.313,-82.7833,-866.313	1/1:122:0,121,0:0:0:121,0:4275,0:-384.572,-36.4246,0,-384.572,-36.4246,-384.572	1/1:138:0,138,0:0:0:138,0:4873,0:-438.726,-41.5421,0,-438.726,-41.5421,-438.726	1/1:52:0,52,0:0:0:52,0:1834,0:-165.339,-15.6536,0,-165.339,-15.6536,-165.339	1/1:84:0,84,0:0:0:84,0:2948,0:-265.556,-25.2865,0,-265.556,-25.2865,-265.556	1/1:83:0,83,0:0:0:83,0:2935,0:-264.385,-24.9855,0,-264.385,-24.9855,-264.385	1/1:92:0,92,0:0:0:92,0:3232,0:-291.105,-27.6948,0,-291.105,-27.6948,-291.105	1/1:78:0,77,0:0:0:77,0:2721,0:-244.804,-23.1793,0,-244.804,-23.1793,-244.804	1/1:71:0,71,0:0:0:71,0:2494,0:-224.713,-21.3731,0,-224.713,-21.3731,-224.713	1/1:105:0,105,0:0:0:105,0:3700,0:-333.207,-31.6082,0,-333.207,-31.6082,-333.207	1/1:57:0,56,0:0:0:56,0:1961,0:-176.405,-16.8577,0,-176.405,-16.8577,-176.405	1/1:31:0,30,0:0:0:30,0:1052,0:-94.6295,-9.0309,0,-94.6295,-9.0309,-94.6295	1/1:345:0,345,0:0:0:345,0:12104,0:-1089.23,-103.855,0,-1089.23,-103.855,-1089.23	1/1:225:0,224,1:0:0:224,1:7895,36:-710.225,-67.4307,0,-707.287,-64.1335,-706.986	1/2:233:0,80,151:0:0:80,151:2840,5402:-671.904,-440.504,-416.422,-231.406,0,-185.95	1/1:163:0,161,0:0:0:161,0:5665,0:-509.657,-48.4658,0,-509.657,-48.4658,-509.657	1/2:120:0,82,38:0:0:82,38:2900,1330:-344.756,-108.556,-83.8718,-236.55,0,-225.111	1/1:157:0,157,0:0:0:157,0:5497,0:-494.856,-47.2617,0,-494.856,-47.2617,-494.856	1/2:425:0,246,179:0:0:246,179:8713,6399:-1231.87,-522.109,-448.055,-710.113,0,-656.229	1/2:319:0,174,144:0:0:174,144:6109,5142:-916.415,-419.231,-366.852,-497.267,0,-453.919	1/1:42:0,42,0:0:0:42,0:1478,0:-133.312,-12.6433,0,-133.312,-12.6433,-133.312	1/1:411:0,410,1:0:0:410,1:14514,36:-1305.66,-123.422,0,-1302.72,-120.125,-1302.42	1/1:169:0,164,5:0:0:164,5:5792,180:-521.042,-49.3689,0,-506.354,-34.322,-504.849	1/2:122:0,63,59:0:0:63,59:2190,2112:-350.589,-172.543,-153.578,-178.399,0,-160.638	1/2:16:0,5,11:0:0:5,11:177,396:-47.0874,-32.6714,-31.1663,-14.7717,0,-11.4604	1/1:17:0,17,0:0:0:17,0:583,0:-52.7906,-5.11751,0,-52.7906,-5.11751,-52.7906	1/2:6:0,2,4:0:0:2,4:72,144:-17.9843,-12.1095,-11.5074,-6.23466,0,-5.03054	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:238:0,238,0:0:0:238,0:8427,0:-758.443,-71.6451,0,-758.443,-71.6451,-758.443	1/2:224:0,73,151:0:0:73,151:2579,5366:-647.647,-437.619,-415.643,-210.382,0,-164.927	1/2:66:0,35,31:0:0:35,31:1251,1088:-190.9,-88.8945,-78.3585,-102.359,0,-93.0274	1/1:6:0,6,0:0:0:6,0:209,0:-19.1505,-1.80618,0,-19.1505,-1.80618,-19.1505	1/2:210:0,110,98:0:0:110,98:3885,3484:-600.343,-283.964,-250.851,-316.427,0,-286.926	1/2:40:0,19,21:0:0:19,21:672,756:-116.776,-62.0456,-56.326,-55.0873,0,-48.7657	1/2:197:0,95,102:0:0:95,102:3342,3631:-568.326,-296.279,-267.681,-272.401,0,-241.696	1/2:113:0,56,57:0:0:56,57:1970,2028:-325.996,-165.634,-148.776,-160.716,0,-143.557	1/1:80:0,80,0:0:0:80,0:2819,0:-253.948,-24.0824,0,-253.948,-24.0824,-253.948	1/2:151:0,101,50:0:0:101,50:3553,1778:-434.471,-145.25,-114.846,-289.575,0,-274.523	1/2:209:0,97,112:0:0:97,112:3429,4011:-606.731,-327.464,-298.264,-279.623,0,-245.908	1/2:235:0,125,109:0:0:125,109:4403,3857:-672.696,-314.232,-276.603,-358.537,0,-325.724	1/1:187:0,187,0:0:0:187,0:6596,0:-593.367,-56.2926,0,-593.367,-56.2926,-593.367	1/1:164:0,163,1:0:0:163,1:5761,36:-518.25,-49.0679,0,-515.312,-45.7706,-515.011	1/1:263:0,263,0:0:0:263,0:9335,0:-840.124,-79.1709,0,-840.124,-79.1709,-840.124	1/2:14:0,10,4:0:0:10,4:339,140:-39.2198,-11.7405,-8.73016,-27.8261,0,-26.622	1/2:170:0,76,92:0:0:76,92:2713,3285:-489.081,-267.902,-245.023,-221.263,0,-193.568	1/2:98:0,29,69:0:0:29,69:1017,2447:-282.471,-199.711,-190.982,-83.1113,0,-62.3403	1/2:23:0,14,9:0:0:14,9:475,309:-63.9483,-25.4314,-21.217,-38.8585,0,-36.1492	1/2:217:0,107,110:0:0:107,110:3784,3918:-627.895,-319.7,-287.489,-308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chr08	7198908	.	G	A	29005.2	PASS	AB=0.45953;ABP=57.4955;AC=36;AF=0.191489;AN=188;AO=1771;CIGAR=1X;DP=10571;DPB=10571;DPRA=1.02821;EPP=3814.02;EPPR=19007.8;GTI=1;LEN=1;MEANALT=1.08889;MQM=59.9396;MQMR=59.9894;NS=94;NUMALT=1;ODDS=3.38371;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63417;QR=313323;RO=8792;RPL=1767;RPP=3814.02;RPPR=19007.8;RPR=4;RUN=1;SAF=0;SAP=3848.69;SAR=1771;SRF=0;SRP=19094.6;SRR=8792;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:69:69,0:69:2458:0:0:0,-20.7711,-221.474	0/1:202:108,94:108:3841:94:3372:-242.887,0,-285.078	0/0:238:237,1:237:8362:1:36:0,-68.0469,-748.999	0/1:43:24,19:24:855:19:684:-48.946,0,-64.3259	0/1:31:15,16:15:536:16:572:-42.4815,0,-39.2429	0/0:226:225,0:225:8009:0:0:0,-67.7317,-720.476	0/0:256:255,1:255:9123:1:36:0,-73.4654,-817.445	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:115:115,0:115:4075:0:0:0,-34.6184,-366.937	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:115:115,0:115:4084:0:0:0,-34.6184,-367.749	0/0:73:73,0:73:2603:0:0:0,-21.9752,-234.518	0/0:64:64,0:64:2275:0:0:0,-19.2659,-205.012	0/0:66:65,1:65:2336:1:36:0,-16.2697,-206.901	0/0:55:55,0:55:1950:0:0:0,-16.5566,-175.775	0/0:24:23,1:23:807:1:36:0,-3.62644,-69.3476	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.337	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:264:263,0:263:9393:0:0:0,-79.1709,-844.974	0/0:216:216,0:216:7650:0:0:0,-65.0225,-688.544	0/1:122:57,65:57:2031:65:2315:-171.885,0,-146.336	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/1:96:62,34:62:2207:34:1220:-81.2079,0,-169.996	0/0:123:123,0:123:4385:0:0:0,-37.0267,-394.823	0/1:257:138,119:138:4921:119:4267:-306.825,0,-365.676	0/1:420:258,162:258:9203:162:5818:-397.287,0,-701.68	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:313:312,0:312:11122:0:0:0,-93.9214,-1000.03	0/0:163:160,3:160:5735:3:108:0,-38.9927,-506.19	0/1:98:54,44:54:1928:44:1559:-111.099,0,-144.296	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.902	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:189:189,0:189:6740:0:0:0,-56.8947,-606.675	0/1:131:71,60:71:2524:60:2147:-154.062,0,-187.978	0/1:64:31,33:31:1112:33:1188:-87.9627,0,-81.1254	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:137:76,61:76:2720:61:2192:-156.304,0,-203.802	0/1:28:10,18:10:360:18:644:-49.8618,0,-24.3155	0/1:182:108,74:108:3868:74:2636:-182.7,0,-293.528	0/1:57:24,32:24:851:32:1148:-86.4826,0,-59.7617	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.822	0/1:181:105,76:105:3747:76:2709:-189.565,0,-282.944	0/1:156:81,75:81:2869:75:2680:-194.485,0,-211.483	0/1:154:81,73:81:2891:73:2605:-188.33,0,-214.067	0/0:107:107,0:107:3811:0:0:0,-32.2102,-343.189	0/0:166:165,1:165:5882:1:36:0,-46.3727,-525.894	0/0:248:248,0:248:8831:0:0:0,-74.6554,-794.78	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:182:105,77:105:3740:77:2755:-193.404,0,-282.015	0/1:71:44,27:44:1560:27:968:-66.0642,0,-119.318	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/1:138:79,59:79:2832:59:2109:-148.537,0,-213.576	0/1:29:9,19:9:324:19:667:-51.655,0,-20.8346	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	0/0:104:104,0:104:3675:0:0:0,-31.3071,-330.954	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:191:96,94:96:3432:94:3371:-246.136,0,-251.627	0/0:301:301,0:301:10752:0:0:0,-90.61,-967.589	0/0:131:131,0:131:4667:0:0:0,-39.4349,-420.193	0/0:146:146,0:146:5210:0:0:0,-43.9504,-469.039	0/0:147:145,1:145:5154:1:36:0,-40.7119,-460.406	0/1:243:104,139:104:3716:139:4996:-376.627,0,-261.492	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:165:165,0:165:5854:0:0:0,-49.6699,-526.974	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:211:211,0:211:7505:0:0:0,-63.5173,-675.497	0/1:75:44,31:44:1575:31:1116:-78.1744,0,-119.464	0/0:191:191,0:191:6817:0:0:0,-57.4967,-613.601	0/0:218:218,0:218:7792:0:0:0,-65.6245,-701.309	0/0:125:125,0:125:4472:0:0:0,-37.6287,-402.642	0/0:140:140,0:140:4980:0:0:0,-42.1442,-448.349	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/0:173:172,1:172:6114:1:36:0,-48.4799,-546.767	0/1:148:86,62:86:3063:62:2208:-154.431,0,-231.347	0/0:268:268,0:268:9549:0:0:0,-80.676,-859.371	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.116	0/0:71:70,1:70:2504:1:36:0,-17.7749,-222.014	0/1:52:24,28:24:856:28:1008:-75.3828,0,-61.7075	0/0:107:107,0:107:3792:0:0:0,-32.2102,-341.479	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:63:39,24:39:1387:24:864:-59.1177,0,-106.163	0/0:81:81,0:81:2874:0:0:0,-24.3834,-258.897	0/1:57:23,34:23:820:34:1224:-93.3083,0,-56.9638	0/1:72:38,34:38:1355:34:1211:-87.6214,0,-100.576	0/1:76:29,47:29:1040:47:1688:-129.329,0,-71.0361	0/0:168:167,0:167:5940:0:0:0,-50.272,-534.35	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.965
chr08	7198914	.	TTCC	ATCT,ATCC	230922	PASS	AB=0.544508,0.451067;ABP=69.1176,82.9151;AC=153,35;AF=0.81383,0.18617;AN=188;AO=8917,1745;CIGAR=1X2M1X,1X3M;DP=10708;DPB=10708;DPRA=0,1.05847;EPP=19366,3792.23;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.90426,2.45455;MQM=59.9854,59.937;MQMR=60;NS=94;NUMALT=2;ODDS=1.71049;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=315088,62282;QR=36;RO=1;RPL=8917,1745;RPP=19366,3792.23;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=19366,3792.23;SAR=8917,1745;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54,0:0:0:54,0:1905,0:-171.726,-16.2556,0,-171.726,-16.2556,-171.726	1/1:69:0,69,0:0:0:69,0:2451,0:-220.845,-20.7711,0,-220.845,-20.7711,-220.845	1/2:208:0,109,95:0:0:109,95:3846,3393:-589.819,-276.648,-243.836,-313.188,0,-284.59	1/1:241:0,238,1:0:0:238,1:8344,36:-750.622,-71.6451,0,-747.685,-68.7077,-747.384	1/2:42:0,23,19:0:0:23,19:826,680:-123.192,-55.8096,-48.8859,-67.7402,0,-62.0206	1/2:31:0,16,15:0:0:16,15:569,540:-90.789,-44.4211,-39.6046,-46.7256,0,-42.2102	1/1:230:0,230,0:0:0:230,0:8139,0:-732.535,-69.2369,0,-732.535,-69.2369,-732.535	1/1:263:0,260,2:0:0:260,2:9177,72:-825.468,-78.2678,0,-819.593,-72.393,-818.991	1/1:83:0,83,0:0:0:83,0:2945,0:-265.285,-24.9855,0,-265.285,-24.9855,-265.285	1/1:117:0,117,0:0:0:117,0:4094,0:-368.651,-35.2205,0,-368.651,-35.2205,-368.651	1/1:57:0,57,0:0:0:57,0:2022,0:-182.252,-17.1587,0,-182.252,-17.1587,-182.252	1/1:115:0,115,0:0:0:115,0:4053,0:-364.96,-34.6185,0,-364.96,-34.6185,-364.96	1/1:76:0,76,0:0:0:76,0:2664,0:-240.005,-22.8783,0,-240.005,-22.8783,-240.005	1/1:65:0,64,0:0:0:64,0:2261,0:-203.394,-19.2659,0,-203.394,-19.2659,-203.394	1/1:69:0,68,1:0:0:68,1:2390,36:-214.996,-20.47,0,-212.059,-17.1728,-211.758	1/1:54:0,54,0:0:0:54,0:1922,0:-173.257,-16.2556,0,-173.257,-16.2556,-173.257	1/1:25:0,24,1:0:0:24,1:843,36:-75.8274,-7.22472,0,-72.8896,-3.92748,-72.5886	1/1:39:0,39,0:0:0:39,0:1381,0:-124.585,-11.7402,0,-124.585,-11.7402,-124.585	1/1:30:0,30,0:0:0:30,0:1074,0:-96.9731,-9.0309,0,-96.9731,-9.0309,-96.9731	1/1:267:0,265,0:0:0:265,0:9419,0:-847.319,-79.773,0,-847.319,-79.773,-847.319	1/1:216:0,215,0:0:0:215,0:7578,0:-681.768,-64.7215,0,-681.768,-64.7215,-681.768	1/2:121:0,58,63:0:0:58,63:2017,2249:-347.696,-183.707,-166.247,-164.342,0,-145.377	1/1:70:0,70,0:0:0:70,0:2462,0:-221.834,-21.0721,0,-221.834,-21.0721,-221.834	1/2:97:0,63,34:0:0:63,34:2221,1220:-280.705,-99.8718,-80.9069,-181.19,0,-170.955	1/1:126:0,123,0:0:0:123,0:4322,0:-388.824,-37.0267,0,-388.824,-37.0267,-388.824	1/2:261:0,142,118:0:0:142,118:4974,4240:-750.67,-345.956,-303.21,-404.769,0,-369.247	1/2:428:0,265,161:0:0:265,161:9383,5772:-1235.1,-470.812,-391.039,-764.336,0,-715.87	1/1:30:0,30,0:0:0:30,0:1062,0:-95.8914,-9.0309,0,-95.8914,-9.0309,-95.8914	1/1:319:0,317,0:0:0:317,0:11186,0:-1006.3,-95.4265,0,-1006.3,-95.4265,-1006.3	1/1:167:0,162,3:0:0:162,3:5744,108:-516.734,-48.7669,0,-507.921,-39.9366,-507.018	1/2:98:0,55,43:0:0:55,43:1958,1544:-285.89,-126.309,-109.752,-159.939,0,-146.995	1/2:7:0,3,4:0:0:3,4:105,144:-20.6484,-12.1095,-11.2064,-8.89307,0,-7.68895	1/1:46:0,46,0:0:0:46,0:1640,0:-147.874,-13.8474,0,-147.874,-13.8474,-147.874	1/2:6:0,3,3:0:0:3,3:107,104:-17.5273,-8.79971,-7.89662,-9.07908,0,-8.17599	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/1:18:0,18,0:0:0:18,0:637,0:-57.6585,-5.41854,0,-57.6585,-5.41854,-57.6585	1/1:194:0,192,0:0:0:192,0:6793,0:-611.144,-57.7978,0,-611.144,-57.7978,-611.144	1/2:133:0,72,60:0:0:72,60:2542,2136:-381.089,-174.087,-152.413,-206.997,0,-188.935	1/2:63:0,31,32:0:0:31,32:1109,1144:-184.069,-93.6366,-84.3046,-90.7894,0,-81.1564	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:141:0,78,61:0:0:78,61:2777,2177:-403.807,-177.472,-153.992,-226.332,0,-207.969	1/2:27:0,10,17:0:0:10,17:360,612:-79.6701,-50.2959,-47.2856,-29.734,0,-24.6165	1/2:178:0,107,70:0:0:107,70:3763,2493:-509.538,-203.229,-171.019,-306.343,0,-285.271	1/2:56:0,24,32:0:0:24,32:864,1137:-163.482,-92.982,-85.7572,-70.8578,0,-61.2249	1/1:66:0,66,0:0:0:66,0:2360,0:-212.659,-19.868,0,-212.659,-19.868,-212.659	1/2:181:0,107,74:0:0:107,74:3782,2616:-521.397,-213.381,-181.171,-308.37,0,-286.094	1/2:156:0,83,73:0:0:83,73:2924,2585:-448.98,-210.923,-185.938,-238.41,0,-216.435	1/2:156:0,84,72:0:0:84,72:2972,2553:-450.42,-208.346,-183.059,-242.428,0,-220.754	1/1:107:0,107,0:0:0:107,0:3781,0:-340.492,-32.2102,0,-340.492,-32.2102,-340.492	1/1:169:0,168,0:0:0:168,0:5925,0:-533.006,-50.573,0,-533.006,-50.573,-533.006	1/1:250:0,247,0:0:0:247,0:8729,0:-785.278,-74.3544,0,-785.278,-74.3544,-785.278	1/2:10:0,5,5:0:0:5,5:178,180:-29.5526,-15.0469,-13.5418,-14.8635,0,-13.3583	1/2:184:0,107,76:0:0:107,76:3788,2736:-531.796,-223.244,-191.034,-308.55,0,-285.672	1/2:71:0,44,27:0:0:44,27:1557,964:-205.768,-78.949,-65.7037,-127.175,0,-119.047	1/2:23:0,13,10:0:0:13,10:454,360:-66.6539,-29.734,-25.8206,-37.275,0,-34.2647	1/2:137:0,79,56:0:0:79,56:2736,1990:-384.505,-162.155,-138.373,-222.342,0,-205.484	1/2:28:0,10,18:0:0:10,18:357,623:-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chr08	7995434	.	T	A	19712.6	PASS	AB=0.428792;ABP=231.549;AC=35;AF=0.18617;AN=188;AO=2238;CIGAR=1X;DP=15916;DPB=15916;DPRA=0.822474;EPP=4854.08;EPPR=29442.2;GTI=4;LEN=1;MEANALT=1.05128;MQM=28.9723;MQMR=44.7457;NS=94;NUMALT=1;ODDS=1.07264;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80128;QR=488344;RO=13673;RPL=2238;RPP=4862.77;RPPR=2522.49;RPR=0;RUN=1;SAF=1;SAP=4854.08;SAR=2237;SRF=4816;SRP=2596.4;SRR=8857;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:84:84,0:84:2993:0:0:0,-25.2865,-259.201	0/0:265:265,0:265:9443:0:0:0,-79.7729,-826.555	0/1:174:121,53:121:4327:53:1889:-68.7696,0,-325.196	0/0:637:637,0:637:22785:0:0:0,-191.756,-1766.88	0/1:100:63,37:63:2229:37:1328:-60.6261,0,-167.445	0/1:104:64,40:64:2270:40:1440:-60.8951,0,-165.276	0/0:300:300,0:300:10729:0:0:0,-90.309,-892.337	0/0:372:372,0:372:13302:0:0:0,-111.983,-1166.64	0/0:162:162,0:162:5792:0:0:0,-48.7669,-498.015	0/0:194:194,0:194:6943:0:0:0,-58.3998,-568.636	0/0:137:137,0:137:4861:0:0:0,-41.2411,-342.584	0/0:114:114,0:114:4054:0:0:0,-34.3174,-357.531	0/0:113:113,0:113:4048:0:0:0,-34.0164,-357.754	0/0:106:106,0:106:3788:0:0:0,-31.9092,-337.491	0/0:183:183,0:183:6572:0:0:0,-55.0885,-492.769	0/0:74:74,0:74:2627:0:0:0,-22.2762,-233.717	0/0:94:94,0:94:3368:0:0:0,-28.2968,-300.363	0/0:84:84,0:84:3008:0:0:0,-25.2865,-263.539	0/0:36:35,1:35:1252:1:36:0,-7.2388,-105.202	0/0:257:257,0:257:9129:0:0:0,-77.3647,-747.228	0/0:146:146,0:146:5223:0:0:0,-43.9504,-452.557	0/1:266:132,134:132:4720:134:4790:-281.286,0,-318.36	0/0:213:213,0:213:7621:0:0:0,-64.1194,-567.376	0/1:217:147,70:147:5233:70:2501:-105.333,0,-390.752	0/0:140:140,0:140:5009:0:0:0,-42.1442,-439.313	0/1:486:244,242:244:8695:242:8629:-502.412,0,-604.728	0/1:200:91,109:91:3241:109:3912:-206.778,0,-219.284	0/0:45:45,0:45:1612:0:0:0,-13.5463,-143.726	0/0:330:330,0:330:11751:0:0:0,-99.3399,-1034.85	0/0:180:179,1:179:6403:1:36:0,-51.4492,-556.512	0/1:202:113,88:113:4055:88:3164:-166.791,0,-271.276	0/1:8:4,4:4:140:4:140:-7.64028,0,-10.4276	0/0:31:31,0:31:1101:0:0:0,-9.33193,-97.0066	0/1:18:15,3:15:513:3:108:-1.74584,0,-40.4406	0/0:14:14,0:14:495:0:0:0,-4.21442,-42.7993	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.0283	0/0:436:436,0:436:15621:0:0:0,-131.249,-1199.19	0/1:339:144,194:144:5149:194:6965:-376.285,0,-352.045	0/1:49:28,21:28:1008:21:752:-34.3868,0,-74.4881	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2049	0/1:235:159,76:159:5651:76:2717:-115.97,0,-423.963	0/1:32:20,12:20:716:12:432:-20.1916,0,-54.3899	0/1:283:181,102:181:6460:102:3653:-165.548,0,-484.883	0/1:91:69,22:69:2465:22:792:-30.3713,0,-162.109	0/0:116:116,0:116:4140:0:0:0,-34.9195,-304.701	0/1:186:113,73:113:4024:73:2612:-144.163,0,-260.108	0/1:148:90,58:90:3211:58:2084:-88.8836,0,-235.906	0/1:425:303,122:303:10799:122:4335:-187.539,0,-730.574	0/0:285:285,0:285:10165:0:0:0,-85.7935,-800.711	0/0:257:257,0:257:9189:0:0:0,-77.3647,-723.342	0/0:265:265,0:265:9482:0:0:0,-79.7729,-816.296	0/0:10:9,1:9:324:1:36:0,-0.107535,-16.1641	0/1:243:131,112:131:4681:112:4028:-183.375,0,-334.561	0/1:75:39,36:39:1380:36:1269:-74.0224,0,-84.5557	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.21741	0/1:149:67,82:67:2400:82:2907:-153.425,0,-165.523	0/1:93:58,35:58:2062:35:1256:-63.6277,0,-119.324	0/0:21:21,0:21:756:0:0:0,-6.32163,-53.5662	0/1:26:19,7:19:684:7:252:-11.7223,0,-49.4996	0/0:99:99,0:99:3544:0:0:0,-29.802,-304.731	0/0:234:234,0:234:8343:0:0:0,-70.441,-619.825	0/0:18:18,0:18:644:0:0:0,-5.41854,-47.3442	0/1:229:105,124:105:3753:124:4441:-268.49,0,-264.322	0/0:452:452,0:452:16182:0:0:0,-136.066,-1304.05	0/0:55:55,0:55:1976:0:0:0,-16.5566,-173.288	0/0:74:74,0:74:2656:0:0:0,-22.2762,-232.748	0/0:385:379,6:379:13555:6:216:0,-100.084,-1069.35	0/1:193:66,127:66:2363:127:4568:-270.585,0,-119.12	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.0831	0/0:112:112,0:112:4004:0:0:0,-33.7154,-344.311	0/0:211:211,0:211:7560:0:0:0,-63.5173,-605.531	0/0:30:30,0:30:1076:0:0:0,-9.0309,-94.2749	0/0:150:150,0:150:5367:0:0:0,-45.1545,-460.873	0/1:60:27,33:27:968:33:1184:-58.1373,0,-66.6643	0/0:218:218,0:218:7792:0:0:0,-65.6245,-685.426	0/0:189:189,0:189:6780:0:0:0,-56.8947,-591.277	0/0:211:210,0:210:7512:0:0:0,-63.2163,-658.804	0/0:60:59,1:59:2115:1:36:0,-15.5031,-177.15	1/1:3:0,3:0:0:3:108:-7.16438,-0.90309,0	0/0:265:265,0:265:9434:0:0:0,-79.7729,-830.794	0/1:175:101,74:101:3597:74:2664:-118.566,0,-257.061	0/0:859:858,0:858:30648:0:0:0,-258.284,-2447.8	0/0:198:198,0:198:7059:0:0:0,-59.6039,-581.337	0/0:137:137,0:137:4909:0:0:0,-41.2411,-366.004	0/1:119:89,30:89:3176:30:1076:-43.3309,0,-224.056	0/0:299:299,0:299:10615:0:0:0,-90.008,-793.267	0/0:84:84,0:84:3000:0:0:0,-25.2865,-263.95	0/1:77:45,32:45:1578:32:1152:-50.5884,0,-116.107	0/0:94:93,0:93:3348:0:0:0,-27.9958,-293.258	0/1:11:5,6:5:180:6:216:-11.7378,0,-13.2407	0/1:71:43,28:43:1535:28:1000:-47.0587,0,-114.797	0/1:105:66,39:66:2357:39:1404:-71.0572,0,-140.46	0/0:319:319,0:319:11413:0:0:0,-96.0286,-835.689	0/0:226:226,0:226:8038:0:0:0,-68.0328,-588.171
chr08	8053469	.	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chr08	8053570	.	G	A	100739	PASS	AB=0.531412;ABP=21.1545;AC=151;AF=0.811828;AN=186;AO=4717;CIGAR=1X;DP=5716;DPB=5716;DPRA=0;EPP=10228.5;EPPR=2152.8;GTI=0;LEN=1;MEANALT=1.01075;MQM=53.8312;MQMR=59.9329;NS=93;NUMALT=1;ODDS=5.96724;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167378;QR=35265;RO=998;RPL=2;RPP=10228.5;RPPR=2152.8;RPR=4715;RUN=1;SAF=0;SAP=10245.8;SAR=4717;SRF=0;SRP=2170.14;SRR=998;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:432:-38.859,-3.61236,0	1/1:97:0,97:0:0:97:3463:-310.392,-29.1999,0	0/1:116:33,83:33:1171:83:2946:-229.045,0,-70.7772	1/1:107:0,107:0:0:107:3801:-341.24,-32.2102,0	0/1:53:28,25:28:993:25:896:-64.4706,0,-73.727	0/1:13:7,6:7:248:6:207:-15.011,0,-18.7508	1/1:67:0,67:0:0:67:2382:-212.733,-20.169,0	1/1:85:0,85:0:0:85:3008:-269.722,-25.5876,0	1/1:38:0,38:0:0:38:1355:-121.777,-11.4391,0	1/1:47:0,47:0:0:47:1667:-150.025,-14.1484,0	1/1:49:0,49:0:0:49:1734:-156.042,-14.7505,0	1/1:52:0,52:0:0:52:1813:-162.8,-15.6536,0	1/1:43:0,43:0:0:43:1515:-135.206,-12.9443,0	1/1:72:0,71:0:0:71:2486:-223.182,-21.3731,0	1/1:42:0,42:0:0:42:1484:-133.573,-12.6433,0	1/1:43:0,43:0:0:43:1508:-135.792,-12.9443,0	1/1:39:0,39:0:0:39:1391:-124.812,-11.7402,0	1/1:34:0,34:0:0:34:1212:-108.784,-10.235,0	1/1:28:0,28:0:0:28:983:-88.3352,-8.42884,0	1/1:137:0,137:0:0:137:4883:-438.64,-41.2411,0	1/1:109:0,109:0:0:109:3857:-345.89,-32.8123,0	0/1:108:63,45:63:2243:45:1599:-110.903,0,-169.622	1/1:27:0,27:0:0:27:949:-84.9384,-8.12781,0	0/1:58:30,28:30:1067:28:1008:-73.0954,0,-78.8815	1/1:35:0,35:0:0:35:1260:-113.315,-10.5361,0	0/1:149:70,79:70:2480:79:2825:-209.427,0,-178.599	0/1:128:60,68:60:2114:68:2399:-176.196,0,-151.978	1/1:29:0,29:0:0:29:1024:-92.1187,-8.72987,0	1/1:204:0,204:0:0:204:7301:-655.38,-61.4101,0	1/1:81:4,77:4:144:77:2729:-231.601,-11.0698,0	0/1:67:28,39:28:991:39:1384:-104.492,0,-69.3345	0/1:5:4,1:4:136:1:36:-2.08802,0,-11.0704	1/1:11:0,11:0:0:11:396:-35.6796,-3.31133,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	1/1:8:0,8:0:0:8:284:-25.4743,-2.40824,0	1/1:124:0,124:0:0:124:4396:-394.663,-37.3277,0	0/1:112:46,66:46:1607:66:2359:-177.926,0,-111.196	0/1:62:35,27:35:1223:27:972:-67.589,0,-91.7061	.:.:.:.:.:.:.:.	0/1:86:36,50:36:1296:50:1785:-134.088,0,-91.0554	0/1:36:15,21:15:532:21:756:-56.6652,0,-37.376	0/1:88:28,60:28:996:60:2122:-163.897,0,-63.4642	0/1:38:21,17:21:743:17:604:-43.2121,0,-55.7542	1/1:60:0,60:0:0:60:2100:-188.687,-18.0618,0	0/1:53:16,37:16:556:37:1328:-103.766,0,-34.4126	0/1:81:37,44:37:1319:44:1567:-116.591,0,-94.6277	0/1:61:23,38:23:816:38:1368:-104.42,0,-55.3989	1/1:78:0,78:0:0:78:2751:-246.229,-23.4803,0	1/1:189:0,189:0:0:189:6694:-600.383,-56.8947,0	1/1:96:1,95:1:36:95:3396:-301.52,-25.3006,0	0/1:6:3,3:3:99:3:108:-8.26172,0,-7.4304	0/1:74:25,49:25:887:49:1741:-133.771,0,-57.8719	0/1:25:17,8:17:599:8:284:-18.3175,0,-46.7123	0/1:10:9,1:9:320:1:36:-0.586969,0,-26.1321	0/1:112:54,58:54:1901:58:2062:-150.651,0,-137.65	0/1:24:12,12:12:432:12:431:-31.7228,0,-31.9965	1/1:3:0,3:0:0:3:108:-10.0591,-0.90309,0	0/1:7:6,1:6:216:1:36:-1.49006,0,-17.6833	1/1:20:0,20:0:0:20:701:-63.2906,-6.0206,0	1/1:97:0,97:0:0:97:3425:-307.002,-29.1999,0	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	0/1:123:65,58:65:2275:58:2067:-149.042,0,-167.904	1/1:122:0,122:0:0:122:4332:-388.701,-36.7257,0	1/1:27:0,27:0:0:27:972:-87.6698,-8.12781,0	1/1:60:0,60:0:0:60:2128:-191.417,-18.0618,0	1/1:78:0,78:0:0:78:2787:-250.778,-23.4803,0	0/1:51:34,17:34:1208:17:597:-38.6469,0,-93.6736	1/1:27:0,27:0:0:27:959:-86.4881,-8.12781,0	1/1:40:0,40:0:0:40:1416:-126.731,-12.0412,0	1/1:57:0,57:0:0:57:2024:-181.929,-17.1587,0	1/1:14:0,14:0:0:14:496:-44.9403,-4.21442,0	1/1:51:0,51:0:0:51:1815:-162.423,-15.3525,0	0/1:36:22,14:22:779:14:504:-34.4431,0,-59.595	1/1:61:0,61:0:0:61:2164:-194.081,-18.3628,0	1/1:132:0,132:0:0:132:4715:-423.326,-39.736,0	1/1:77:0,77:0:0:77:2705:-242.656,-23.1793,0	1/1:75:0,75:0:0:75:2684:-240.843,-22.5773,0	0/1:8:4,4:4:144:4:144:-10.8719,0,-10.9054	1/1:79:0,79:0:0:79:2802:-251.041,-23.7814,0	0/1:80:27,53:27:942:53:1857:-142.327,0,-61.0099	1/1:99:0,99:0:0:99:3542:-318.17,-29.802,0	1/1:65:0,65:0:0:65:2308:-207.639,-19.567,0	1/1:43:0,43:0:0:43:1508:-135.748,-12.9443,0	0/1:43:18,25:18:644:25:857:-64.3025,0,-45.3463	1/1:106:1,105:1:36:105:3725:-331.189,-28.3109,0	1/1:42:0,42:0:0:42:1497:-134.242,-12.6433,0	0/1:57:28,29:28:990:29:996:-72.4083,0,-72.2539	1/1:59:0,59:0:0:59:2076:-186.489,-17.7608,0	0/1:27:16,11:16:561:11:396:-27.8039,0,-42.6893	0/1:82:45,37:45:1564:37:1291:-91.5925,0,-116.361	0/1:38:27,11:27:957:11:377:-22.5501,0,-75.0047	1/1:45:0,45:0:0:45:1599:-142.822,-13.5464,0	1/1:72:0,72:0:0:72:2511:-225.828,-21.6742,0
chr08	8070542	.	C	T	36097.9	PASS	AB=0.514196;ABP=10.2234;AC=36;AF=0.191489;AN=188;AO=2137;CIGAR=1X;DP=10840;DPB=10840;DPRA=1.30541;EPP=4634.77;EPPR=18838.4;GTI=0;LEN=1;MEANALT=1.0625;MQM=59.986;MQMR=59.9799;NS=94;NUMALT=1;ODDS=3.18684;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76266;QR=309231;RO=8698;RPL=2136;RPP=4634.77;RPPR=18829.7;RPR=1;RUN=1;SAF=2137;SAP=4643.45;SAR=0;SRF=8697;SRP=18881.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:170:170,0:170:6036:0:0:0,-51.1751,-543.344	0/1:214:126,88:126:4503:88:3141:-218.494,0,-341.018	0/0:273:273,0:273:9757:0:0:0,-82.1812,-878.078	0/1:95:44,51:44:1580:51:1817:-135.212,0,-113.894	0/1:79:41,38:41:1472:38:1368:-99.6395,0,-108.995	0/0:218:217,1:217:7762:1:36:0,-62.0263,-695.013	0/0:207:207,0:207:7338:0:0:0,-62.3132,-660.461	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:142:142,0:142:5063:0:0:0,-42.7463,-455.814	0/0:61:60,0:60:2132:0:0:0,-18.0618,-191.786	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:86:86,0:86:3032:0:0:0,-25.8886,-273.108	0/0:74:74,0:74:2603:0:0:0,-22.2762,-234.473	0/0:64:64,0:64:2250:0:0:0,-19.2659,-202.761	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.161	0/0:96:96,0:96:3413:0:0:0,-28.8989,-307.384	0/0:65:65,0:65:2262:0:0:0,-19.5669,-203.838	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.6	0/0:256:255,0:255:9095:0:0:0,-76.7626,-818.312	0/0:178:178,0:178:6261:0:0:0,-53.5833,-563.584	0/1:186:57,129:57:2036:129:4585:-356.818,0,-127.521	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:119:65,54:65:2315:54:1932:-138.334,0,-172.788	0/0:145:145,0:145:5131:0:0:0,-43.6493,-461.936	0/1:363:172,191:172:6124:191:6819:-504.506,0,-441.988	0/1:217:116,100:116:4136:100:3542:-253.754,0,-307.192	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:285:284,1:284:10117:1:36:0,-82.1953,-906.867	0/0:158:156,2:156:5560:2:72:0,-40.726,-493.688	0/1:111:61,50:61:2167:50:1792:-128.148,0,-161.882	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:154:154,0:154:5479:0:0:0,-46.3586,-493.218	0/1:211:105,106:105:3718:106:3774:-276.34,0,-271.304	0/1:81:44,37:44:1535:37:1328:-95.4388,0,-114.055	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:153:66,87:66:2347:87:3081:-231.455,0,-165.431	0/1:38:18,20:18:635:20:712:-52.9675,0,-46.0378	0/1:144:73,71:73:2585:71:2540:-185.503,0,-189.55	0/1:55:30,25:30:1080:25:876:-62.5976,0,-80.9566	0/0:63:63,0:63:2202:0:0:0,-18.9649,-198.44	0/1:110:42,68:42:1487:68:2428:-185.663,0,-101.01	0/1:137:63,74:63:2221:74:2650:-197.505,0,-158.642	0/1:206:111,94:111:3979:94:3363:-240.963,0,-296.377	0/0:129:129,0:129:4573:0:0:0,-38.8329,-411.738	0/0:128:127,1:127:4504:1:36:0,-34.9336,-401.932	0/0:292:291,1:291:10344:1:36:0,-84.3025,-927.293	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:172:78,94:78:2800:94:3368:-251.559,0,-200.462	0/1:78:38,40:38:1355:40:1425:-105.065,0,-98.7694	0/1:34:22,12:22:788:12:432:-28.9862,0,-61.0098	0/1:175:99,76:99:3536:76:2708:-191.281,0,-265.77	0/1:20:10,10:10:343:10:360:-26.7237,0,-25.18	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:23:14,9:14:495:9:320:-22.2187,0,-37.9593	0/0:104:104,0:104:3684:0:0:0,-31.3071,-331.762	0/0:129:127,2:127:4540:2:72:0,-31.9961,-401.928	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:192:104,88:104:3694:88:3155:-226.376,0,-274.866	0/0:240:236,4:236:8364:4:144:0,-58.9336,-739.459	0/0:103:103,0:103:3678:0:0:0,-31.0061,-331.222	0/0:80:79,1:79:2801:1:36:0,-20.4841,-248.731	0/0:163:162,1:162:5811:1:36:0,-45.4696,-519.503	0/1:232:67,165:67:2404:165:5908:-461.99,0,-146.778	0/0:26:25,1:25:900:1:36:0,-4.2285,-77.7227	0/0:109:109,0:109:3877:0:0:0,-32.8123,-349.125	0/0:96:96,0:96:3394:0:0:0,-28.8989,-305.675	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/0:230:230,0:230:8174:0:0:0,-69.2369,-735.051	0/1:72:43,29:43:1536:29:1028:-71.1566,0,-116.859	0/0:226:224,1:224:7950:1:36:0,-64.4175,-712.006	0/0:199:199,0:199:7110:0:0:0,-59.905,-639.955	0/0:185:183,2:183:6507:2:72:0,-48.8538,-578.88	0/0:133:133,0:133:4699:0:0:0,-40.037,-423.071	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/0:162:162,0:162:5763:0:0:0,-48.7669,-518.789	0/1:201:101,100:101:3582:100:3577:-261.629,0,-262.068	0/0:303:303,0:303:10817:0:0:0,-91.2121,-973.376	0/0:89:89,0:89:3172:0:0:0,-26.7917,-285.703	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/1:64:34,30:34:1207:30:1067:-77.0753,0,-89.6694	0/0:142:142,0:142:4979:0:0:0,-42.7463,-448.259	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:65:32,33:32:1143:33:1180:-86.9411,0,-83.6117	0/0:81:81,0:81:2855:0:0:0,-24.3834,-257.187	0/1:62:32,30:32:1140:30:1080:-78.8494,0,-84.2453	0/1:124:58,66:58:2052:66:2331:-172.719,0,-147.622	0/1:64:23,41:23:816:41:1467:-113.059,0,-54.4958	0/0:68:68,0:68:2408:0:0:0,-20.47,-216.978	0/0:74:74,0:74:2619:0:0:0,-22.2762,-235.956
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chr08	8213971	.	C	A	13256.8	PASS	AB=0.525498;ABP=12.0905;AC=34;AF=0.182796;AN=186;AO=850;CIGAR=1X;DP=4248;DPB=4248;DPRA=1.15834;EPP=1848.76;EPPR=7381.67;GTI=0;LEN=1;MEANALT=1;MQM=43.5035;MQMR=56.575;NS=93;NUMALT=1;ODDS=1.31826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29940;QR=114932;RO=3398;RPL=850;RPP=1848.76;RPPR=7381.67;RPR=0;RUN=1;SAF=850;SAP=1848.76;SAR=0;SRF=3398;SRP=7381.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:438:0:0:0,-3.91339,-39.7055	0/0:64:64,0:64:2195:0:0:0,-19.2659,-197.147	0/1:77:51,26:51:1737:26:893:-54.006,0,-132.412	0/0:110:110,0:110:3763:0:0:0,-33.1133,-338.714	0/1:15:7,8:7:224:8:280:-20.4831,0,-15.9509	0/1:27:17,10:17:578:10:360:-23.4426,0,-44.1309	0/0:71:71,0:71:2392:0:0:0,-21.3731,-215.287	0/0:50:50,0:50:1718:0:0:0,-15.0515,-154.499	0/0:23:23,0:23:776:0:0:0,-6.92369,-69.8639	0/0:66:66,0:66:2227:0:0:0,-19.868,-200.393	0/0:30:30,0:30:1016:0:0:0,-9.0309,-91.6699	0/0:40:40,0:40:1307:0:0:0,-12.0412,-117.621	0/0:30:30,0:30:1012:0:0:0,-9.0309,-91.2932	0/0:30:30,0:30:1020:0:0:0,-9.0309,-92.0631	0/0:35:35,0:35:1194:0:0:0,-10.536,-107.694	0/0:41:41,0:41:1344:0:0:0,-12.3422,-120.648	0/0:43:43,0:43:1426:0:0:0,-12.9443,-128.344	0/0:41:41,0:41:1402:0:0:0,-12.3422,-126.109	0/0:32:32,0:32:1062:0:0:0,-9.63296,-95.6697	0/0:87:87,0:87:2962:0:0:0,-26.1896,-266.632	0/0:56:56,0:56:1897:0:0:0,-16.8577,-170.181	0/1:58:24,34:24:830:34:1186:-88.3056,0,-57.5121	0/0:21:21,0:21:716:0:0:0,-6.32163,-64.656	0/1:30:14,16:14:492:16:544:-39.2647,0,-35.5641	0/0:24:24,0:24:814:0:0:0,-7.22472,-73.3333	0/1:142:73,69:73:2533:69:2426:-173.534,0,-185.38	0/1:53:22,31:22:745:31:1087:-79.6,0,-51.3098	0/0:23:23,0:23:759:0:0:0,-6.92369,-68.4994	0/0:135:134,1:134:4519:1:36:0,-37.0722,-402.804	0/0:63:63,0:63:2161:0:0:0,-18.9649,-194.247	0/1:47:15,32:15:506:32:1123:-84.563,0,-31.7029	0/1:7:4,3:4:129:3:96:-6.71716,0,-9.81566	0/0:10:10,0:10:337:0:0:0,-3.0103,-30.6425	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6299	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0389	.:.:.:.:.:.:.:.	0/0:87:87,0:87:2824:0:0:0,-26.1896,-254.064	0/1:78:31,47:31:1075:47:1659:-121.724,0,-73.5011	0/1:33:18,15:18:592:15:532:-36.7244,0,-43.6191	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/1:70:39,31:39:1311:31:1108:-76.7883,0,-97.0504	0/1:33:16,17:16:537:17:608:-43.943,0,-38.6938	0/1:47:20,27:20:703:27:943:-69.1391,0,-48.9693	0/1:32:18,14:18:603:14:495:-34.4306,0,-44.8979	0/0:31:30,1:30:1018:1:36:0,-5.78341,-88.3088	0/1:48:21,27:21:733:27:951:-70.402,0,-51.8378	0/1:51:24,27:24:821:27:942:-67.2698,0,-58.6271	0/1:99:45,54:45:1582:54:1903:-139.506,0,-112.742	0/0:54:54,0:54:1777:0:0:0,-16.2556,-160.11	0/0:56:55,1:55:1878:1:36:0,-13.3092,-165.681	0/0:88:88,0:88:2957:0:0:0,-26.4906,-266.057	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.223	0/1:56:24,32:24:837:32:1130:-81.4074,0,-58.5321	0/1:39:23,16:23:798:16:572:-39.5746,0,-60.3787	0/1:12:5,7:5:158:7:248:-18.3082,0,-10.7907	0/1:48:25,23:25:854:23:811:-56.7826,0,-62.6836	0/1:29:12,17:12:401:17:604:-45.2474,0,-27.6553	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:9:5,4:5:167:4:144:-10.4879,0,-12.6491	0/0:43:42,1:42:1416:1:36:0,-9.42328,-123.996	0/0:73:73,0:73:2485:0:0:0,-21.9752,-223.248	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07836	0/1:100:48,52:48:1652:52:1836:-133.532,0,-118.412	0/0:62:61,1:61:2090:1:36:0,-15.1153,-184.603	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.3027	0/0:33:33,0:33:1124:0:0:0,-9.93399,-100.89	0/0:60:60,0:60:2001:0:0:0,-18.0618,-180.1	0/1:61:27,34:27:922:34:1208:-89.1915,0,-64.9146	0/0:14:14,0:14:482:0:0:0,-4.21442,-43.688	0/0:35:35,0:35:1214:0:0:0,-10.536,-109.27	0/0:47:47,0:47:1550:0:0:0,-14.1484,-139.737	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.6674	0/0:45:45,0:45:1512:0:0:0,-13.5463,-136.052	0/1:28:18,10:18:619:10:360:-23.3532,0,-47.1755	0/0:47:47,0:47:1602:0:0:0,-14.1484,-144.008	0/0:85:85,0:85:2950:0:0:0,-25.5875,-265.657	0/0:47:47,0:47:1611:0:0:0,-14.1484,-144.494	0/0:51:51,0:51:1693:0:0:0,-15.3525,-151.306	0/1:6:2,4:2:64:4:136:-10.3796,0,-4.24449	0/0:54:54,0:54:1838:0:0:0,-16.2556,-165.505	0/1:65:35,30:35:1195:30:1049:-72.1268,0,-87.7917	0/0:86:86,0:86:2922:0:0:0,-25.8886,-262.708	0/0:66:66,0:66:2219:0:0:0,-19.868,-199.755	0/0:36:36,0:36:1180:0:0:0,-10.8371,-106.269	0/1:38:12,26:12:392:26:936:-70.561,0,-23.6588	0/0:64:64,0:64:2081:0:0:0,-19.2659,-187.461	0/0:19:19,0:19:620:0:0:0,-5.71957,-56.0601	0/1:36:16,20:16:506:20:710:-51.2026,0,-34.9571	0/0:50:50,0:50:1665:0:0:0,-15.0515,-149.938	0/1:36:9,27:9:316:27:952:-72.2598,0,-17.8925	0/1:71:33,38:33:1038:38:1333:-95.9019,0,-72.0338	0/1:27:10,17:10:319:17:595:-45.0522,0,-20.8887	0/0:29:29,0:29:951:0:0:0,-8.72987,-85.8004	0/0:70:70,0:70:2372:0:0:0,-21.0721,-213.528
chr08	8223701	.	A	G	182160	PASS	AB=0.492881;ABP=4.61809;AC=152;AF=0.808511;AN=188;AO=8429;CIGAR=1X;DP=10304;DPB=10304;DPRA=0;EPP=18297.7;EPPR=4057.15;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9614;MQMR=59.984;NS=94;NUMALT=1;ODDS=10.3343;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=300096;QR=66909;RO=1871;RPL=8429;RPP=18306.4;RPPR=4057.15;RPR=0;RUN=1;SAF=8428;SAP=18297.7;SAR=1;SRF=1871;SRP=4065.84;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:196:1,194:1:36:194:6924:-619.648,-55.4425,0	0/1:130:59,71:59:2116:71:2529:-188.723,0,-151.575	1/1:240:0,239:0:0:239:8497:-764.415,-71.9462,0	0/1:103:50,53:50:1796:53:1883:-138.742,0,-130.916	0/1:84:51,33:51:1832:33:1180:-81.2215,0,-139.793	1/1:141:0,141:0:0:141:5055:-455.094,-42.4452,0	1/1:282:0,282:0:0:282:10079:-906.891,-84.8905,0	1/1:114:0,114:0:0:114:4077:-367.113,-34.3174,0	1/1:129:2,127:2:72:127:4503:-398.594,-31.9961,0	1/1:82:0,82:0:0:82:2924:-263.394,-24.6845,0	1/1:63:1,62:1:36:62:2201:-194.756,-15.3666,0	1/1:78:0,78:0:0:78:2784:-250.801,-23.4803,0	1/1:111:0,111:0:0:111:3956:-356.194,-33.4143,0	1/1:86:0,86:0:0:86:3063:-275.899,-25.8886,0	1/1:55:0,55:0:0:55:1959:-176.585,-16.5567,0	1/1:85:0,85:0:0:85:3023:-272.301,-25.5876,0	1/1:94:0,94:0:0:94:3351:-301.807,-28.2968,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:205:0,205:0:0:205:7327:-659.48,-61.7112,0	1/1:145:0,145:0:0:145:5175:-465.859,-43.6494,0	0/1:54:36,18:36:1277:18:644:-42.035,0,-98.9755	1/1:44:0,43:0:0:43:1540:-138.533,-12.9443,0	0/1:59:27,32:27:968:32:1131:-84.337,0,-69.6766	1/1:38:0,38:0:0:38:1355:-122.25,-11.4391,0	0/1:374:179,195:179:6411:195:6958:-513.702,0,-464.492	0/1:151:94,57:94:3344:57:1987:-133.646,0,-255.723	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:172:0,172:0:0:172:6164:-554.858,-51.7772,0	1/1:214:8,206:8:288:206:7314:-632.045,-38.153,0	0/1:84:45,39:45:1604:39:1387:-99.8416,0,-119.364	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:7:4,3:4:136:3:108:-7.96796,0,-10.4683	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:216:0,216:0:0:216:7669:-690.217,-65.0225,0	0/1:217:99,118:99:3516:118:4175:-310.61,0,-251.326	0/1:53:31,22:31:1107:22:773:-53.9349,0,-83.9856	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:152:79,73:79:2808:73:2601:-188.581,0,-207.204	0/1:25:12,13:12:432:13:460:-34.2096,0,-31.6954	0/1:142:57,85:57:2044:85:3047:-231.712,0,-141.486	0/1:83:38,45:38:1364:45:1596:-118.945,0,-98.0752	1/1:72:1,71:1:36:71:2531:-224.426,-18.0759,0	0/1:72:41,31:41:1468:31:1101:-77.7256,0,-110.742	0/1:210:92,118:92:3304:118:4155:-310.916,0,-234.362	0/1:220:87,133:87:3124:133:4737:-360.263,0,-215.159	1/1:114:0,114:0:0:114:4065:-366.036,-34.3174,0	1/1:209:0,208:0:0:208:7425:-668.025,-62.6142,0	1/1:128:0,128:0:0:128:4536:-408.407,-38.5318,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:129:63,66:63:2259:66:2364:-174.185,0,-164.739	0/1:49:27,22:27:972:22:792:-56.8552,0,-73.0474	0/1:31:15,16:15:528:16:572:-42.4815,0,-38.5194	0/1:132:69,63:69:2472:63:2252:-163.203,0,-182.998	0/1:40:22,18:22:780:18:639:-45.797,0,-58.4818	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:32:20,12:20:720:12:421:-28.5905,0,-55.4958	1/1:77:0,77:0:0:77:2745:-247.291,-23.1793,0	1/1:152:2,150:2:72:150:5344:-474.257,-38.9198,0	1/1:11:0,11:0:0:11:378:-34.3491,-3.31133,0	0/1:160:81,79:81:2884:79:2796:-203.715,0,-211.63	1/1:280:0,280:0:0:280:9977:-897.858,-84.2884,0	1/1:98:0,98:0:0:98:3495:-314.758,-29.5009,0	1/1:109:0,109:0:0:109:3859:-347.506,-32.8123,0	1/1:139:1,138:1:36:138:4920:-439.323,-38.2449,0	0/1:144:82,62:82:2932:62:2215:-156.248,0,-220.766	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:94:0,94:0:0:94:3342:-300.998,-28.2968,0	1/1:127:1,126:1:36:126:4468:-398.691,-34.6325,0	1/1:50:0,50:0:0:50:1783:-160.751,-15.0515,0	1/1:64:0,64:0:0:64:2288:-206.182,-19.2659,0	0/1:77:49,28:49:1752:28:1004:-67.4966,0,-134.785	1/1:183:1,182:1:36:182:6462:-578.069,-51.4902,0	1/1:201:0,201:0:0:201:7170:-645.357,-60.507,0	1/1:184:0,184:0:0:184:6585:-592.729,-55.3895,0	1/1:185:1,184:1:36:184:6553:-585.311,-52.0923,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:157:0,157:0:0:157:5591:-503.313,-47.2617,0	0/1:163:87,76:87:3120:76:2711:-195.166,0,-231.958	1/1:262:0,262:0:0:262:9328:-839.485,-78.8699,0	1/1:126:0,126:0:0:126:4468:-402.289,-37.9298,0	1/1:101:0,101:0:0:101:3582:-322.589,-30.404,0	0/1:106:57,49:57:2029:49:1739:-124.885,0,-150.971	1/1:193:0,193:0:0:193:6833:-615.043,-58.0988,0	1/1:46:0,46:0:0:46:1614:-145.545,-13.8474,0	0/1:89:42,47:42:1499:47:1664:-123.256,0,-108.412	1/1:83:0,83:0:0:83:2939:-264.715,-24.9855,0	0/1:71:31,40:31:1107:40:1424:-107.085,0,-78.567	0/1:119:69,50:69:2476:50:1771:-123.85,0,-187.271	0/1:69:43,26:43:1540:26:909:-61.3523,0,-118.122	1/1:109:0,109:0:0:109:3904:-351.536,-32.8123,0	1/1:149:0,149:0:0:149:5302:-477.316,-44.8535,0
chr08	8223757	.	G	T	41129.5	PASS	AB=0.506784;ABP=4.92524;AC=36;AF=0.191489;AN=188;AO=2449;CIGAR=1X;DP=12141;DPB=12141;DPRA=1.26338;EPP=5320.95;EPPR=21046.7;GTI=0;LEN=1;MEANALT=1;MQM=59.9334;MQMR=59.9867;NS=94;NUMALT=1;ODDS=4.96204;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87369;QR=346055;RO=9691;RPL=2449;RPP=5320.95;RPPR=21046.7;RPR=0;RUN=1;SAF=0;SAP=5320.95;SAR=2449;SRF=0;SRP=21046.7;SRR=9691;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:140:140,0:140:4980:0:0:0,-42.1442,-448.349	0/0:109:109,0:109:3900:0:0:0,-32.8123,-351.194	0/1:319:201,118:201:7181:118:4236:-285.39,0,-550.317	0/0:230:230,0:230:8224:0:0:0,-69.2369,-740.144	0/1:57:27,30:27:964:30:1065:-79.001,0,-69.9181	0/1:69:45,24:45:1589:24:864:-57.3115,0,-122.527	0/0:91:91,0:91:3243:0:0:0,-27.3937,-292.092	0/0:212:212,0:212:7584:0:0:0,-63.8184,-682.6	0/0:210:210,0:210:7510:0:0:0,-63.2163,-675.942	0/0:147:147,0:147:5264:0:0:0,-44.2514,-473.895	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/0:135:135,0:135:4819:0:0:0,-40.639,-433.858	0/0:136:136,0:136:4863:0:0:0,-40.9401,-437.823	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/0:121:121,0:121:4313:0:0:0,-36.4246,-388.346	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.48	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.491	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:200:200,0:200:7139:0:0:0,-60.206,-642.57	0/0:196:196,0:196:6985:0:0:0,-59.0019,-628.71	0/1:217:87,130:87:3096:130:4641:-352.508,0,-213.546	0/0:190:190,0:190:6787:0:0:0,-57.1957,-610.904	0/1:93:45,48:45:1608:48:1712:-126.37,0,-117.014	0/0:173:173,0:173:6160:0:0:0,-52.0782,-554.5	0/1:347:186,161:186:6659:161:5681:-406.945,0,-494.93	0/1:327:164,163:164:5822:163:5805:-424.128,0,-425.658	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/0:294:293,1:293:10452:1:36:0,-84.9045,-937.003	0/0:155:155,0:155:5533:0:0:0,-46.6596,-498.091	0/1:142:91,51:91:3248:51:1824:-121.695,0,-249.796	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:249:249,0:249:8913:0:0:0,-74.9565,-802.15	0/1:139:69,70:69:2472:70:2490:-182.422,0,-180.891	0/1:75:35,40:35:1260:40:1440:-107.32,0,-91.1282	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:132:62,70:62:2192:70:2508:-186.236,0,-157.538	0/1:41:22,19:22:792:19:684:-49.5481,0,-59.2634	0/1:258:109,149:109:3898:149:5329:-402.077,0,-273.347	0/1:69:30,39:30:1076:39:1388:-104.374,0,-76.3818	0/0:63:62,1:62:2224:1:36:0,-15.3666,-196.826	0/1:209:114,95:114:4088:95:3360:-239.701,0,-305.19	0/1:213:92,121:92:3296:121:4321:-324.945,0,-232.74	0/1:214:114,100:114:4075:100:3538:-254.208,0,-302.51	0/0:136:136,0:136:4872:0:0:0,-40.9401,-438.633	0/0:179:179,0:179:6380:0:0:0,-53.8844,-574.291	0/0:125:125,0:125:4456:0:0:0,-37.6287,-401.21	0/1:14:3,11:3:104:11:392:-31.4056,0,-5.48839	0/1:172:61,111:61:2192:111:3970:-305.714,0,-145.768	0/1:135:63,72:63:2260:72:2592:-192.889,0,-163.024	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:229:124,105:124:4393:105:3721:-266.154,0,-326.61	0/1:54:32,22:32:1144:22:792:-55.3501,0,-87.0139	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/0:145:145,0:145:5175:0:0:0,-43.6493,-465.891	0/0:122:120,2:120:4270:2:72:0,-29.8889,-377.643	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:184:86,98:86:3056:98:3524:-261.971,0,-219.881	0/0:273:271,2:271:9634:2:57:0,-76.7679,-861.606	0/0:90:90,0:90:3204:0:0:0,-27.0927,-288.585	0/0:119:118,0:118:4187:0:0:0,-35.5215,-376.655	0/0:214:211,3:211:7563:3:108:0,-54.3452,-670.63	0/1:223:65,158:65:2307:158:5591:-436.097,0,-140.761	0/0:60:59,1:59:2100:1:36:0,-14.4635,-185.671	0/0:130:130,0:130:4660:0:0:0,-39.1339,-419.561	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:175:174,1:174:6213:1:36:0,-49.082,-555.668	0/1:158:76,82:76:2724:82:2943:-217.512,0,-197.84	0/0:269:266,3:266:9500:3:93:0,-72.3003,-846.285	0/0:223:222,1:222:7940:1:36:0,-63.5314,-711.027	0/0:156:156,0:156:5578:0:0:0,-46.9607,-502.143	0/0:136:132,4:132:4708:4:140:0,-27.9955,-410.937	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/0:144:143,1:143:5103:1:36:0,-39.75,-455.816	0/1:167:92,75:92:3288:75:2684:-191.533,0,-245.868	0/0:272:272,0:272:9711:0:0:0,-81.8802,-873.942	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842	0/1:60:33,27:33:1188:27:964:-69.015,0,-89.1668	0/0:140:139,1:139:4980:1:36:0,-38.5459,-444.75	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:84:46,38:46:1652:38:1364:-97.7742,0,-123.682	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.899	0/1:70:33,37:33:1180:37:1328:-98.7501,0,-85.4359	0/1:182:106,76:106:3790:76:2732:-191.27,0,-286.505	0/1:80:31,49:31:1090:49:1764:-134.961,0,-74.3255	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/0:160:160,0:160:5727:0:0:0,-48.1648,-515.488
chr08	8279058	.	T	C	223.411	PASS	AB=0.167323;ABP=979.694;AC=24;AF=0.12766;AN=188;AO=202;CIGAR=1X;DP=5574;DPB=5574;DPRA=0.807508;EPP=441.648;EPPR=11477.9;GTI=14;LEN=1;MEANALT=1;MQM=43.5644;MQMR=59.9652;NS=94;NUMALT=1;ODDS=51.4423;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7222;QR=190698;RO=5372;RPL=202;RPP=441.648;RPPR=11477.9;RPR=0;RUN=1;SAF=0;SAP=441.648;SAR=202;SRF=0;SRP=11668.2;SRR=5372;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:56:56,0:56:1978:0:0:0,-16.8577,-178.291	0/1:61:49,12:49:1699:12:422:-19.2558,0,-134.827	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.724	0/1:24:20,4:20:682:4:144:-5.90479,0,-54.47	0/1:24:21,3:21:741:3:104:-2.36603,0,-59.7869	0/0:79:79,0:79:2787:0:0:0,-23.7814,-251.067	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:76:76,0:76:2702:0:0:0,-22.8783,-243.421	0/0:25:25,0:25:866:0:0:0,-7.52575,-78.2514	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.668	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.658	0/0:83:83,0:83:2953:0:0:0,-24.9855,-266.003	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.78	0/0:66:66,0:66:2319:0:0:0,-19.868,-208.966	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/0:92:92,0:92:3220:0:0:0,-27.6948,-289.934	0/0:128:128,0:128:4517:0:0:0,-38.5318,-406.695	0/1:24:19,5:19:684:5:180:-8.97192,0,-54.6656	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/1:44:37,7:37:1309:7:252:-9.11007,0,-104.864	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.4	0/1:119:103,16:103:3692:16:576:-14.8354,0,-296.655	0/1:58:52,6:52:1818:6:216:-2.03188,0,-146.438	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/0:190:190,0:190:6747:0:0:0,-57.1957,-607.116	0/0:63:62,1:62:2212:1:36:0,-15.4164,-195.797	0/1:48:35,13:35:1256:13:468:-27.2881,0,-98.8958	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2579	0/0:173:173,0:173:6174:0:0:0,-52.0782,-555.757	0/1:101:88,13:88:3137:13:464:-11.1328,0,-252.151	0/0:43:41,2:41:1449:2:72:0,-6.20211,-123.962	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:45:39,6:39:1381:6:216:-5.06486,0,-110.911	0/1:21:17,4:17:612:4:140:-6.35032,0,-49.0918	0/0:67:62,5:62:2189:5:180:0,-4.14694,-181.253	0/1:41:37,4:37:1317:4:144:-0.741425,0,-106.488	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:42:39,3:39:1392:3:108:0,-2.78444,-115.72	0/0:33:31,2:31:1116:2:68:0,-3.54306,-94.3608	0/0:97:91,6:91:3230:6:216:0,-9.75123,-271.472	0/0:99:99,0:99:3499:0:0:0,-29.802,-315.119	0/0:124:123,1:123:4332:1:36:0,-33.7294,-386.457	0/0:87:87,0:87:3113:0:0:0,-26.1896,-280.395	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:49:36,13:36:1284:13:460:-25.9134,0,-101.113	0/1:25:20,5:20:697:5:180:-8.6338,0,-55.5249	0/1:8:7,1:7:252:1:36:-1.14028,0,-20.6207	0/1:40:36,4:36:1277:4:144:-1.08831,0,-103.19	0/0:23:22,1:22:769:1:36:0,-3.38757,-65.9925	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:17:16,1:16:567:1:36:0,-1.5965,-47.8397	0/0:99:99,0:99:3510:0:0:0,-29.802,-316.109	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.032	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:86:78,8:78:2777:8:288:0,-0.160117,-224.442	0/0:160:160,0:160:5702:0:0:0,-48.1648,-513.295	0/0:55:55,0:55:1942:0:0:0,-16.5566,-175.052	0/0:51:51,0:51:1821:0:0:0,-15.3525,-164.169	0/0:221:220,1:220:7657:1:36:0,-62.9915,-685.633	0/1:44:32,12:32:1076:12:417:-23.992,0,-83.8909	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:55:55,0:55:1968:0:0:0,-16.5566,-175.988	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:123:123,0:123:4359:0:0:0,-37.0267,-392.483	0/1:31:26,5:26:921:5:180:-6.25861,0,-73.8733	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/0:98:98,0:98:3478:0:0:0,-29.5009,-313.23	0/0:59:59,0:59:2063:0:0:0,-17.7608,-185.936	0/0:93:93,0:93:3294:0:0:0,-27.9958,-296.678	0/1:9:8,1:8:280:1:36:-0.839245,0,-22.83	0/0:63:63,0:63:2199:0:0:0,-18.9649,-198.171	0/1:33:28,5:28:958:5:180:-6.38918,0,-76.5922	0/0:122:122,0:122:4350:0:0:0,-36.7257,-391.673	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:29:28,1:28:1004:1:36:0,-5.19375,-87.1397	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/1:45:38,7:38:1360:7:252:-9.16415,0,-109.154	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:27:24,3:24:860:3:108:-1.61916,0,-69.5925	0/1:68:54,14:54:1924:14:503:-23.3347,0,-152.967	0/1:27:20,7:20:716:7:252:-14.526,0,-56.6399	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.349	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688
chr08	8279102	.	T	G	232323	PASS	AB=0.484713;ABP=12.1057;AC=151;AF=0.803191;AN=188;AO=10624;CIGAR=1X;DP=12965;DPB=12965;DPRA=27.871;EPP=22838.8;EPPR=5023.59;GTI=2;LEN=1;MEANALT=1.05376;MQM=59.7112;MQMR=59.9919;NS=94;NUMALT=1;ODDS=0.254277;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=379138;QR=83518;RO=2336;RPL=26;RPP=22847.5;RPPR=5023.59;RPR=10598;RUN=1;SAF=10623;SAP=23064;SAR=1;SRF=2336;SRP=5075.57;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:120:1,119:1:36:119:4233:-377.544,-32.5253,0	1/1:98:0,98:0:0:98:3482:-313.496,-29.5009,0	0/1:160:81,79:81:2893:79:2793:-203.439,0,-212.44	1/1:287:0,287:0:0:287:10190:-916.712,-86.3956,0	0/1:105:49,55:49:1745:55:1960:-145.005,0,-125.665	0/1:71:31,39:31:1116:39:1400:-105.013,0,-79.4649	1/1:75:0,75:0:0:75:2694:-242.686,-22.5773,0	1/1:253:0,253:0:0:253:9036:-813.166,-76.1606,0	1/1:345:2,343:2:72:343:12189:-1089.78,-97.0186,0	1/1:201:0,201:0:0:201:7146:-643.18,-60.507,0	1/1:142:0,142:0:0:142:5066:-456.072,-42.7463,0	1/1:251:0,250:0:0:250:8931:-803.272,-75.2575,0	1/1:169:0,169:0:0:169:6059:-545.347,-50.8741,0	1/1:162:0,162:0:0:162:5800:-522.097,-48.7669,0	1/1:155:1,154:1:36:154:5519:-493.211,-43.0614,0	1/1:120:0,120:0:0:120:4312:-388.245,-36.1236,0	1/1:88:0,88:0:0:88:3116:-280.586,-26.4906,0	1/1:92:0,92:0:0:92:3288:-296.082,-27.6948,0	1/1:66:0,66:0:0:66:2360:-212.435,-19.868,0	1/1:140:0,140:0:0:140:5032:-452.881,-42.1442,0	1/1:267:0,267:0:0:267:9554:-859.74,-80.375,0	0/1:55:28,27:28:1000:27:972:-71.2179,0,-73.7587	1/1:128:0,128:0:0:128:4497:-404.875,-38.5318,0	0/1:92:31,61:31:1112:61:2177:-168.498,0,-72.6966	1/1:72:0,72:0:0:72:2569:-231.452,-21.6742,0	0/1:356:198,158:198:7089:158:5656:-401.288,0,-530.901	0/1:207:81,126:81:2889:126:4510:-343.748,0,-197.932	1/1:83:1,82:1:36:82:2935:-260.758,-21.3872,0	1/1:186:1,185:1:21:185:6612:-592.725,-53.8916,0	1/1:194:4,189:4:144:189:6764:-595.258,-45.0563,0	0/1:187:106,81:106:3769:81:2866:-201.878,0,-283.117	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:10:0,10:0:0:10:360:-32.7434,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7188,-1.80618,0	1/1:377:0,377:0:0:377:13535:-1217.8,-113.488,0	0/1:109:58,51:58:2080:51:1808:-130.157,0,-154.657	0/1:96:46,50:46:1652:50:1754:-129.238,0,-120.07	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:131:68,63:68:2427:63:2249:-163.198,0,-179.25	0/1:44:23,21:23:815:21:756:-54.9572,0,-60.4254	0/1:213:124,89:124:4435:89:3177:-222.009,0,-335.202	0/1:132:62,70:62:2211:70:2493:-184.88,0,-159.518	1/1:138:0,138:0:0:138:4909:-441.95,-41.5421,0	0/1:170:87,83:87:3105:83:2950:-214.472,0,-228.501	0/1:150:67,83:67:2412:83:2965:-221.854,0,-172.181	0/1:179:92,87:92:3295:87:3112:-226.312,0,-242.884	1/1:71:0,71:0:0:71:2522:-227.214,-21.3731,0	1/1:138:0,138:0:0:138:4924:-443.28,-41.5421,0	1/1:81:0,81:0:0:81:2874:-258.76,-24.3834,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:142:67,75:67:2408:75:2696:-200.133,0,-174.23	0/1:133:71,62:71:2521:62:2228:-160.745,0,-187.104	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:223:111,112:111:3956:112:3974:-290.692,0,-289.101	0/1:29:15,14:15:540:14:504:-36.9667,0,-40.2067	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	1/1:175:0,175:0:0:175:6259:-563.367,-52.6803,0	1/1:205:2,203:2:72:203:7265:-647.05,-54.8744,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:231:131,100:131:4681:100:3588:-253.581,0,-351.894	1/1:258:3,255:3:108:255:9103:-809.063,-67.5906,0	1/1:105:0,105:0:0:105:3742:-336.925,-31.6082,0	1/1:93:0,93:0:0:93:3302:-297.383,-27.9958,0	1/1:260:5,255:5:180:255:9076:-800.15,-61.7157,0	0/1:279:188,91:188:6703:91:3268:-210.345,0,-519.356	1/1:81:1,80:1:36:80:2864:-254.396,-20.7852,0	1/1:65:0,65:0:0:65:2320:-209.01,-19.567,0	1/1:90:0,90:0:0:90:3209:-288.334,-27.0927,0	1/1:18:0,18:0:0:18:648:-58.6495,-5.41854,0	1/1:234:0,234:0:0:234:8270:-744.216,-70.441,0	0/1:142:82,60:82:2948:60:2145:-150.566,0,-222.806	1/1:228:1,227:1:36:227:8067:-722.34,-65.0366,0	1/1:205:0,205:0:0:205:7299:-656.943,-61.7112,0	1/1:229:0,229:0:0:229:8177:-735.93,-68.9359,0	1/1:150:0,150:0:0:150:5337:-480.455,-45.1545,0	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	1/1:126:1,125:1:36:125:4496:-401.189,-34.3315,0	0/1:120:54,66:54:1932:66:2338:-174.545,0,-138.033	1/1:254:0,254:0:0:254:9061:-815.369,-76.4616,0	1/1:116:0,116:0:0:116:4148:-373.49,-34.9195,0	1/1:189:0,189:0:0:189:6765:-608.812,-56.8947,0	0/1:110:46,64:46:1648:64:2288:-173.065,0,-115.495	1/1:307:1,306:1:36:306:10901:-977.022,-88.8179,0	1/1:34:0,34:0:0:34:1220:-110.104,-10.235,0	0/1:149:79,70:79:2823:70:2509:-181.202,0,-209.455	1/1:166:0,166:0:0:166:5972:-537.577,-49.971,0	0/1:83:38,45:38:1368:45:1601:-119.39,0,-98.4353	0/1:178:81,97:81:2904:97:3476:-259.447,0,-208.012	0/1:156:91,65:91:3260:65:2328:-162.789,0,-246.66	1/1:152:0,151:0:0:151:5378:-483.778,-45.4555,0	1/1:216:0,216:0:0:216:7698:-692.664,-65.0225,0
chr08	8279130	.	C	A	573926	PASS	AB=0.483042;ABP=26.1361;AC=152;AF=0.808511;AN=188;AO=20959;CIGAR=1X;DP=25810;DPB=25810;DPRA=0;EPP=45514.9;EPPR=10499.9;GTI=0;LEN=1;MEANALT=1.15957;MQM=59.8112;MQMR=59.8904;NS=94;NUMALT=1;ODDS=1.40204;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=741282;QR=170675;RO=4834;RPL=10455;RPP=3.25906;RPPR=13.3888;RPR=10504;RUN=1;SAF=10455;SAP=3.25906;SAR=10504;SRF=2341;SRP=13.3888;SRR=2493;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:225:1,224:1:36:224:7912:-708.506,-64.1335,0	1/1:200:0,200:0:0:200:7050:-634.462,-60.206,0	0/1:411:197,214:197:6959:214:7528:-553.83,0,-502.646	1/1:648:0,647:0:0:647:22945:-2063.95,-194.766,0	0/1:205:106,99:106:3762:99:3490:-252.599,0,-277.069	0/1:143:71,72:71:2523:72:2540:-185.798,0,-184.275	1/1:193:0,193:0:0:193:6837:-615.388,-58.0988,0	1/1:400:0,400:0:0:400:14101:-1268.83,-120.412,0	1/1:482:2,480:2:72:480:17023:-1524.63,-138.26,0	1/1:313:0,313:0:0:313:11150:-1003.35,-94.2224,0	1/1:246:0,246:0:0:246:8696:-782.523,-74.0534,0	1/1:469:0,468:0:0:468:16611:-1494.3,-140.882,0	1/1:319:0,319:0:0:319:11280:-1015.06,-96.0286,0	1/1:290:0,290:0:0:290:10279:-925.034,-87.2987,0	1/1:304:0,304:0:0:304:10795:-971.348,-91.5131,0	1/1:237:0,237:0:0:237:8352:-751.674,-71.3441,0	1/1:197:1,196:1:27:196:6927:-620.712,-56.6031,0	1/1:181:1,180:1:36:180:6407:-573.106,-50.8882,0	1/1:128:0,128:0:0:128:4491:-404.291,-38.5318,0	1/1:356:0,355:0:0:355:12540:-1127.9,-106.866,0	1/1:378:0,378:0:0:378:13411:-1206.76,-113.789,0	0/1:204:120,84:120:4260:84:2984:-207.378,0,-322.17	1/1:311:0,311:0:0:311:10910:-981.78,-93.6203,0	0/1:202:86,116:86:3046:116:4103:-308.647,0,-213.563	1/1:182:0,182:0:0:182:6403:-576.358,-54.7875,0	0/1:638:322,316:322:11306:316:11173:-813.132,0,-825.298	0/1:494:245,249:245:8658:249:8782:-641.655,0,-629.399	1/1:144:1,143:1:36:143:5068:-452.642,-39.75,0	1/1:595:0,595:0:0:595:21097:-1897.42,-179.113,0	1/1:338:15,322:15:532:322:11422:-979.485,-53.5935,0	0/1:329:193,136:193:6792:136:4807:-333.734,0,-512.163	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	1/1:26:0,26:0:0:26:923:-83.3868,-7.82678,0	0/1:19:11,8:11:396:8:280:-19.8197,0,-30.2632	1/1:18:0,18:0:0:18:626:-56.6624,-5.41854,0	1/1:20:0,20:0:0:20:702:-63.4317,-6.0206,0	1/1:707:1,704:1:36:704:24911:-2237.6,-208.969,0	0/1:242:110,132:110:3900:132:4656:-346.322,0,-278.256	0/1:188:89,99:89:3159:99:3479:-256.725,0,-227.942	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:359:187,172:187:6615:172:6037:-435.367,0,-486.587	0/1:128:68,59:68:2393:59:2066:-147.451,0,-177.036	0/1:437:245,192:245:8645:192:6799:-480.368,0,-646.354	0/1:245:130,114:130:4548:114:4043:-290.24,0,-335.679	1/1:262:0,262:0:0:262:9110:-819.555,-78.8699,0	0/1:294:154,140:154:5377:140:5012:-362.638,0,-395.189	0/1:324:171,153:171:6068:153:5355:-384.48,0,-448.68	0/1:379:191,188:191:6776:188:6654:-484.733,0,-495.8	1/1:196:1,195:1:36:195:6965:-623.299,-55.4036,0	1/1:455:1,454:1:36:454:15946:-1431.19,-133.37,0	1/1:196:2,193:2:72:193:6833:-608.066,-52.2249,0	0/1:26:10,16:10:348:16:564:-43.2635,0,-23.8284	0/1:273:139,134:139:4858:134:4760:-346.376,0,-355.196	0/1:250:117,133:117:4149:133:4671:-345.296,0,-298.335	0/1:29:13,16:13:464:16:576:-43.4451,0,-33.3676	0/1:430:215,215:215:7594:215:7589:-553.576,0,-553.944	0/1:113:55,57:55:1926:57:2030:-148.896,0,-139.541	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:277:0,277:0:0:277:9813:-883.077,-83.3853,0	1/1:376:3,373:3:104:373:13273:-1184.66,-103.484,0	1/1:14:0,14:0:0:14:482:-43.7051,-4.21442,0	0/1:439:223,216:223:7918:216:7679:-558.886,0,-580.45	1/1:479:2,476:2:72:476:16858:-1509.98,-137.415,0	1/1:201:0,201:0:0:201:7075:-636.724,-60.507,0	1/1:235:0,235:0:0:235:8326:-749.252,-70.7421,0	1/1:487:6,481:6:208:481:16963:-1507.24,-127.543,0	0/1:464:298,166:298:10615:166:5894:-390.801,0,-815.571	1/1:166:1,165:1:36:165:5844:-522.473,-46.3727,0	1/1:161:0,161:0:0:161:5657:-509.243,-48.4658,0	1/1:160:0,160:0:0:160:5640:-507.174,-48.1648,0	1/1:43:0,43:0:0:43:1500:-135.288,-12.9443,0	1/1:328:0,328:0:0:328:11510:-1035.41,-98.7378,0	0/1:229:127,102:127:4470:102:3608:-255.989,0,-333.54	1/1:426:0,426:0:0:426:14966:-1346.52,-128.239,0	1/1:428:1,426:1:36:426:15146:-1359.25,-125.301,0	1/1:468:1,467:1:36:467:16486:-1479.65,-137.284,0	1/1:305:4,301:4:140:301:10635:-944.118,-78.8696,0	0/1:32:4,28:4:144:28:994:-80.1414,0,-3.68066	1/1:298:1,297:1:36:297:10504:-941.66,-86.1087,0	0/1:348:158,190:158:5606:190:6738:-501.704,0,-399.827	1/1:442:1,439:1:36:439:15640:-1403.41,-129.215,0	1/1:220:0,220:0:0:220:7785:-700.675,-66.2266,0	1/1:339:2,337:2:72:337:12035:-1076.06,-95.2124,0	0/1:209:103,106:103:3656:106:3753:-275.056,0,-266.329	1/1:515:3,512:3:108:512:18128:-1621,-144.955,0	1/1:69:0,69:0:0:69:2409:-217.059,-20.7711,0	0/1:284:149,135:149:5214:135:4780:-344.861,0,-383.914	1/1:334:0,334:0:0:334:11782:-1060.25,-100.544,0	0/1:198:83,115:83:2948:115:4064:-306.344,0,-205.952	0/1:361:176,184:176:6148:184:6521:-478.226,0,-444.7	0/1:308:205,103:205:7199:103:3646:-235.576,0,-555.169	1/1:311:0,310:0:0:310:10982:-987.914,-93.3193,0	1/1:437:1,435:1:36:435:15408:-1382.66,-128.011,0
chr08	8279144	.	TATTGA	CATTGA,CATTTGA	346346	PASS	AB=0.77452,0.21987;ABP=3620.23,3769.57;AC=155,33;AF=0.824468,0.175532;AN=188;AO=13263,1234;CIGAR=1X5M,1X1M1I4M;DP=14580;DPB=16567.3;DPRA=0,1.19084;EPP=28803.2,2682.61;EPPR=11.6962;GTI=9;LEN=1,7;MEANALT=2.2234,2.73333;MQM=59.895,59.4425;MQMR=60;NS=94;NUMALT=2;ODDS=1.76922;PAIRED=0,0;PAIREDR=0;PAO=5342.83,5342.83;PQA=186449,186449;PQR=4.66667;PRO=0.333333;QA=471290,43015;QR=140;RO=4;RPL=1338,0;RPP=18354,2682.61;RPPR=5.18177;RPR=11925,1234;RUN=1,1;SAF=1338,0;SAP=18354,2682.61;SAR=11925,1234;SRF=1;SRP=5.18177;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:104:0,102,0:0:0:102,0:3638,0:-323.875,-30.7051,0,-323.875,-30.7051,-323.875	1/1:104:0,104,0:0:0:104,0:3705,0:-328.109,-31.3071,0,-328.109,-31.3071,-328.109	1/2:268:0,194,70:0:0:194,70:6924,2433:-759.996,-195.608,-137.208,-562.229,0,-541.157	1/1:366:0,363,0:0:0:363,0:12915,0:-1156.3,-109.274,0,-1156.3,-109.274,-1156.3	1/2:106:0,78,28:0:0:78,28:2770,991:-300.819,-75.2748,-51.7945,-220.126,0,-211.697	1/2:75:0,45,30:0:0:45,30:1589,1049:-210.915,-81.614,-68.0676,-125.621,0,-116.59	1/1:116:0,116,0:0:0:116,0:4152,0:-369.697,-34.9195,0,-369.697,-34.9195,-369.697	1/1:151:0,151,0:0:0:151,0:5372,0:-469.331,-45.4555,0,-469.331,-45.4555,-469.331	1/1:155:0,155,0:0:0:155,0:5463,0:-472.107,-46.6597,0,-472.107,-46.6597,-472.107	1/1:120:0,120,0:0:0:120,0:4256,0:-371.392,-36.1236,0,-371.392,-36.1236,-371.392	1/1:106:0,106,0:0:0:106,0:3742,0:-328.543,-31.9092,0,-328.543,-31.9092,-328.543	1/1:212:0,210,0:0:0:210,0:7482,0:-665.851,-63.2163,0,-665.851,-63.2163,-665.851	1/1:157:0,156,0:0:0:156,0:5561,0:-490.646,-46.9607,0,-490.646,-46.9607,-490.646	1/1:123:0,121,0:0:0:121,0:4310,0:-382.926,-36.4246,0,-382.926,-36.4246,-382.926	1/1:152:0,152,0:0:0:152,0:5417,0:-478.476,-45.7566,0,-478.476,-45.7566,-478.476	1/1:110:0,110,0:0:0:110,0:3894,0:-343.32,-33.1133,0,-343.32,-33.1133,-343.32	1/1:108:0,108,0:0:0:108,0:3851,0:-341.657,-32.5112,0,-341.657,-32.5112,-341.657	1/1:96:0,96,0:0:0:96,0:3416,0:-302.358,-28.8989,0,-302.358,-28.8989,-302.358	1/1:61:0,61,0:0:0:61,0:2151,0:-189.906,-18.3628,0,-189.906,-18.3628,-189.906	1/1:217:0,215,0:0:0:215,0:7664,0:-685.208,-64.7215,0,-685.208,-64.7215,-685.208	1/1:124:0,124,0:0:0:124,0:4405,0:-381.167,-37.3277,0,-381.167,-37.3277,-381.167	1/2:187:0,151,34:0:0:151,34:5382,1206:-536.942,-98.2418,-52.7862,-438.686,0,-428.451	1/1:190:0,190,0:0:0:190,0:6774,0:-602.41,-57.1957,0,-602.41,-57.1957,-602.41	1/2:110:0,88,22:0:0:88,22:3149,788:-315.882,-59.2998,-32.8092,-251.63,0,-245.008	1/1:113:0,113,0:0:0:113,0:3980,0:-354.276,-34.0164,0,-354.276,-34.0164,-354.276	1/2:541:0,476,61:0:0:476,61:16884,2082:-1544.03,-168.819,-25.5283,-1375.13,0,-1356.77	1/2:292:0,227,63:0:0:227,63:8048,2220:-829.981,-174.614,-106.281,-649.348,0,-630.383	1/1:62:0,61,0:0:0:61,0:2171,0:-190.387,-18.3628,0,-190.387,-18.3628,-190.387	1/1:583:0,580,0:0:0:580,0:20677,0:-1860.04,-174.597,0,-1860.04,-174.597,-1860.04	1/1:147:0,140,6:0:0:140,6:4992,196:-447.546,-42.1442,0,-431.723,-36.0383,-429.916	1/2:147:0,95,50:0:0:95,50:3353,1757:-412.05,-139.119,-110.521,-269.226,0,-254.174	1/1:5:0,5,0:0:0:5,0:176,0:-15.8534,-1.50515,0,-15.8534,-1.50515,-15.8534	1/1:26:0,26,0:0:0:26,0:917,0:-82.7867,-7.82678,0,-82.7867,-7.82678,-82.7867	1/2:15:0,11,4:0:0:11,4:387,142:-43.201,-11.7445,-8.4332,-31.6358,0,-30.4316	1/1:9:0,9,0:0:0:9,0:311,0:-27.7888,-2.70927,0,-27.7888,-2.70927,-27.7888	1/1:14:0,14,0:0:0:14,0:495,0:-44.5477,-4.21442,0,-44.5477,-4.21442,-44.5477	1/1:694:1,690,0:1:32:690,0:24338,0:-2186.23,-205.178,0,-2186.53,-207.711,-2189.11	1/2:136:0,108,27:0:0:108,27:3828,942:-382.351,-70.6717,-38.1604,-305.837,0,-297.709	1/2:98:0,81,17:0:0:81,17:2887,590:-278.227,-43.1584,-18.7749,-230.281,0,-225.164	1/1:5:0,5,0:0:0:5,0:180,0:-16.5039,-1.50515,0,-16.5039,-1.50515,-16.5039	1/2:236:1,170,65:1:36:170,65:6064,2266:-667.376,-173.428,-125.188,-483.683,0,-467.053	1/2:80:0,61,19:0:0:61,19:2184,676:-231.062,-53.0607,-34.6979,-175.979,0,-170.26	1/2:229:0,182,45:0:0:182,45:6480,1576:-650.066,-122.195,-67.4073,-521.849,0,-508.303	1/2:123:0,93,30:0:0:93,30:3293,1068:-349.732,-81.6429,-53.6471,-262.709,0,-253.678	1/1:124:0,122,0:0:0:122,0:4309,0:-383.446,-36.7257,0,-383.446,-36.7257,-383.446	1/2:252:0,209,42:0:0:209,42:7393,1446:-719.144,-117.012,-54.0963,-601.775,0,-589.132	1/2:185:0,137,47:0:0:137,47:4862,1658:-522.607,-126.599,-85.3578,-387.629,0,-373.481	1/2:205:1,153,51:1:36:153,51:5483,1775:-581.304,-134.529,-91.4066,-437.305,0,-424.89	1/1:130:0,130,0:0:0:130,0:4616,0:-411.492,-39.1339,0,-411.492,-39.1339,-411.492	1/1:331:0,330,0:0:0:330,0:11736,0:-1047.46,-99.3399,0,-1047.46,-99.3399,-1047.46	1/1:185:0,183,1:0:0:183,1:6461,36:-581.153,-55.0885,0,-578.217,-52.1974,-577.916	1/2:17:0,12,5:0:0:12,5:428,180:-49.8212,-14.9506,-11.3383,-35.1361,0,-33.631	1/2:139:0,91,48:0:0:91,48:3248,1682:-394.483,-129.794,-102.4,-257.656,0,-243.206	1/2:210:0,181,28:0:0:181,28:6466,978:-606.422,-79.2439,-24.7574,-526.879,0,-518.45	1/2:15:0,9,6:0:0:9,6:324,211:-43.1824,-16.8249,-14.1157,-26.0476,0,-24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chr08	8288506	.	A	G	94970.4	PASS	AB=0.767484;ABP=687.233;AC=158;AF=0.840426;AN=188;AO=4299;CIGAR=1X;DP=4565;DPB=4565;DPRA=0;EPP=9338.17;EPPR=574.108;GTI=16;LEN=1;MEANALT=1.03191;MQM=54.8435;MQMR=59.4905;NS=94;NUMALT=1;ODDS=0.741171;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153409;QR=8947;RO=263;RPL=0;RPP=9338.17;RPPR=574.108;RPR=4299;RUN=1;SAF=4299;SAP=9338.17;SAR=0;SRF=263;SRP=574.108;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,61:0:0:61:2172:-193.625,-18.3628,0	1/1:47:0,47:0:0:47:1688:-151.9,-14.1484,0	1/1:44:4,40:4:125:40:1438:-117.608,-1.6867,0	1/1:156:0,156:0:0:156:5553:-499.057,-46.9607,0	0/1:22:4,18:4:129:18:640:-50.683,0,-5.30489	0/1:17:6,11:6:201:11:388:-30.0788,0,-13.2933	1/1:92:0,92:0:0:92:3280:-294.301,-27.6948,0	1/1:109:0,109:0:0:109:3879:-347.08,-32.8123,0	1/1:58:0,58:0:0:58:2072:-185.773,-17.4597,0	1/1:39:0,39:0:0:39:1384:-124.483,-11.7402,0	1/1:33:0,33:0:0:33:1169:-105.164,-9.93399,0	1/1:91:0,91:0:0:91:3253:-291.452,-27.3937,0	1/1:63:0,63:0:0:63:2248:-201.67,-18.9649,0	1/1:28:0,28:0:0:28:1008:-90.0379,-8.42884,0	1/1:71:0,71:0:0:71:2540:-228.482,-21.3731,0	1/1:37:0,37:0:0:37:1323:-118.92,-11.1381,0	1/1:21:0,21:0:0:21:756:-68.0765,-6.32163,0	1/1:31:0,31:0:0:31:1100:-99.1288,-9.33193,0	1/1:28:0,28:0:0:28:1008:-90.5552,-8.42884,0	1/1:89:0,89:0:0:89:3192:-286.382,-26.7917,0	1/1:94:0,94:0:0:94:3357:-301.445,-28.2968,0	0/1:28:13,15:13:441:15:536:-40.1402,0,-31.584	1/1:71:0,71:0:0:71:2540:-228.64,-21.3731,0	0/1:48:8,40:8:284:40:1432:-114.413,0,-11.4539	1/1:47:0,47:0:0:47:1672:-150.257,-14.1484,0	0/1:78:19,59:19:641:59:2116:-167.152,0,-34.525	0/1:98:11,87:11:373:87:3100:-248.942,0,-4.39431	1/1:32:0,32:0:0:32:1152:-103.883,-9.63296,0	1/1:156:0,156:0:0:156:5554:-498.322,-46.9607,0	1/1:42:0,42:0:0:42:1510:-135.418,-12.6433,0	0/1:34:10,24:10:326:24:860:-67.2439,0,-19.4177	1/1:8:0,8:0:0:8:284:-25.8783,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.6657,-1.80618,0	1/1:6:0,6:0:0:6:204:-18.5131,-1.80618,0	1/1:5:0,5:0:0:5:176:-16.1573,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.8237,-0.60206,0	1/1:144:0,144:0:0:144:5156:-463.635,-43.3483,0	0/1:38:17,21:17:608:21:748:-56.1369,0,-43.5919	0/1:28:7,21:7:248:21:752:-59.1473,0,-14.2174	1/1:3:0,3:0:0:3:108:-10.0648,-0.90309,0	0/1:52:7,44:7:244:44:1555:-124.353,0,-6.42943	0/1:30:7,23:7:218:23:824:-65.3745,0,-10.8901	0/1:68:14,54:14:485:54:1928:-152.096,0,-23.5002	0/1:29:7,22:7:240:22:784:-62.0503,0,-13.2042	1/1:46:0,46:0:0:46:1652:-148.805,-13.8474,0	0/1:24:12,12:12:401:12:432:-31.9893,0,-29.1854	0/1:50:5,45:5:176:45:1612:-129.815,0,-1.13352	0/1:79:11,68:11:354:68:2420:-193.989,0,-8.38627	1/1:37:0,37:0:0:37:1320:-119.044,-11.1381,0	1/1:79:0,79:0:0:79:2832:-254.306,-23.7814,0	1/1:59:0,59:0:0:59:2092:-188.489,-17.7608,0	0/1:6:1,5:1:21:5:176:-14.3258,0,-0.293766	0/1:19:4,15:4:125:15:540:-43.0433,0,-5.83902	0/1:15:2,13:2:68:13:460:-37.0058,0,-1.94226	0/1:5:3,2:3:108:2:72:-5.31855,0,-8.57002	1/1:35:1,34:1:32:34:1201:-104.806,-7.33822,0	0/1:12:7,5:7:237:5:179:-12.6452,0,-17.9745	1/1:2:0,2:0:0:2:72:-6.83588,-0.60206,0	0/1:10:1,9:1:36:9:316:-25.7654,0,-0.587975	1/1:44:0,43:0:0:43:1528:-137.313,-12.9443,0	1/1:51:0,51:0:0:51:1828:-164.317,-15.3525,0	1/1:2:0,2:0:0:2:72:-6.76169,-0.60206,0	0/1:64:18,46:18:613:46:1652:-129.64,0,-36.2227	1/1:103:0,103:0:0:103:3657:-328.711,-31.0061,0	1/1:38:0,38:0:0:38:1364:-122.933,-11.4391,0	1/1:42:0,42:0:0:42:1485:-133.666,-12.6433,0	1/1:110:0,110:0:0:110:3932:-353.222,-33.1133,0	1/1:33:3,30:3:104:30:1064:-86.2596,-0.232781,0	1/1:26:0,26:0:0:26:936:-84.2915,-7.82678,0	1/1:36:0,36:0:0:36:1292:-116.062,-10.8371,0	1/1:33:0,33:0:0:33:1168:-105.368,-9.93399,0	1/1:13:0,13:0:0:13:468:-42.4395,-3.91339,0	1/1:54:0,54:0:0:54:1928:-173.217,-16.2556,0	0/1:41:6,35:6:216:35:1244:-99.5692,0,-7.44828	1/1:112:0,112:0:0:112:3931:-353.017,-33.7154,0	1/1:34:0,34:0:0:34:1220:-109.917,-10.235,0	1/1:33:0,33:0:0:33:1180:-105.938,-9.93399,0	1/1:56:0,56:0:0:56:1992:-179.05,-16.8577,0	1/1:3:0,3:0:0:3:108:-10.056,-0.90309,0	1/1:44:0,44:0:0:44:1572:-141.475,-13.2453,0	0/1:51:5,46:5:176:46:1656:-133.687,0,-0.832489	1/1:115:0,115:0:0:115:4080:-366.381,-34.6185,0	1/1:42:0,42:0:0:42:1508:-135.601,-12.6433,0	1/1:59:0,59:0:0:59:2111:-189.942,-17.7608,0	0/1:20:4,16:4:136:16:568:-45.263,0,-6.55494	1/1:112:0,112:0:0:112:4016:-360.874,-33.7154,0	1/1:19:0,19:0:0:19:667:-60.0174,-5.71957,0	0/1:45:13,32:13:448:32:1141:-88.2603,0,-27.1026	1/1:79:0,79:0:0:79:2802:-251.437,-23.7814,0	0/1:20:8,12:8:269:12:428:-32.7998,0,-18.5155	0/1:37:19,18:19:656:18:648:-47.3359,0,-48.2241	0/1:33:6,27:6:208:27:960:-76.669,0,-9.12509	1/1:81:0,81:0:0:81:2904:-260.737,-24.3834,0	1/1:117:0,117:0:0:117:4196:-377.09,-35.2205,0
chr08	8299437	.	GGAG	GGAA,AGAA	132883	PASS	AB=0.508598,0.482803;ABP=4.504,8.98512;AC=152,36;AF=0.808511,0.191489;AN=188;AO=5035,1139;CIGAR=3M1X,1X2M1X;DP=6225;DPB=6226;DPRA=5.5672,1.15216;EPP=10936.4,2467.64;EPPR=9.52472;GTI=2;LEN=1,4;MEANALT=1.8172,2.4359;MQM=59.9938,60;MQMR=60;NS=94;NUMALT=2;ODDS=3.36757;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=45.5,45.5;PQR=0;PRO=0;QA=178279,39719;QR=108;RO=3;RPL=0,0;RPP=10936.4,2476.32;RPPR=9.52472;RPR=5035,1139;RUN=1,1;SAF=0,1;SAP=10936.4,2467.64;SAR=5035,1138;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27,0:0:0:27,0:955,0:-86.2648,-8.12781,0,-86.2648,-8.12781,-86.2648	1/1:53:0,53,0:0:0:53,0:1880,0:-169.479,-15.9546,0,-169.479,-15.9546,-169.479	1/2:97:0,52,45:0:0:52,45:1840,1571:-277.947,-128.074,-112.42,-150.166,0,-136.62	1/1:134:0,130,0:0:0:130,0:4592,0:-413.162,-39.1339,0,-413.162,-39.1339,-413.162	1/2:47:0,26,21:0:0:26,21:928,743:-136.529,-60.8726,-53.0459,-76.0115,0,-69.6898	1/2:31:0,13,18:0:0:13,18:464,641:-90.4286,-52.6009,-48.6876,-38.1841,0,-32.7656	1/1:73:0,70,0:0:0:70,0:2504,0:-225.323,-21.0721,0,-225.323,-21.0721,-225.323	1/1:116:0,116,0:0:0:116,0:4113,0:-370.357,-34.9195,0,-370.357,-34.9195,-370.357	1/1:37:0,37,0:0:0:37,0:1301,0:-117.39,-11.1381,0,-117.39,-11.1381,-117.39	1/1:68:0,68,0:0:0:68,0:2392,0:-215.536,-20.47,0,-215.536,-20.47,-215.536	1/1:53:0,53,0:0:0:53,0:1880,0:-169.479,-15.9546,0,-169.479,-15.9546,-169.479	1/1:68:0,67,0:0:0:67,0:2338,0:-210.429,-20.169,0,-210.429,-20.169,-210.429	1/1:42:0,42,0:0:0:42,0:1495,0:-134.845,-12.6433,0,-134.845,-12.6433,-134.845	1/1:73:0,73,0:0:0:73,0:2607,0:-234.878,-21.9752,0,-234.878,-21.9752,-234.878	1/1:37:0,37,0:0:0:37,0:1311,0:-118.232,-11.1381,0,-118.232,-11.1381,-118.232	1/1:43:0,43,0:0:0:43,0:1524,0:-137.453,-12.9443,0,-137.453,-12.9443,-137.453	1/1:33:0,33,0:0:0:33,0:1180,0:-106.508,-9.93399,0,-106.508,-9.93399,-106.508	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/1:25:0,25,0:0:0:25,0:874,0:-78.9752,-7.52575,0,-78.9752,-7.52575,-78.9752	1/1:125:0,123,1:0:0:123,1:4342,30:-390.682,-37.0267,0,-388.283,-34.6031,-387.982	1/1:83:0,82,0:0:0:82,0:2871,0:-258.345,-24.6845,0,-258.345,-24.6845,-258.345	1/2:57:0,16,41:0:0:16,41:568,1447:-164.465,-118.184,-113.367,-46.6354,0,-34.2932	1/1:86:0,86,0:0:0:86,0:3035,0:-273.38,-25.8886,0,-273.38,-25.8886,-273.38	1/2:36:0,22,14:0:0:22,14:788,465:-102.231,-37.9514,-31.3287,-64.6221,0,-60.4077	1/1:35:0,35,0:0:0:35,0:1252,0:-112.985,-10.5361,0,-112.985,-10.5361,-112.985	1/2:189:1,122,64:1:36:122,64:4346,2220:-531.516,-177.575,-143.787,-351.368,0,-335.039	1/2:102:0,53,48:0:0:53,48:1890,1690:-291.724,-137.655,-121.701,-154.141,0,-139.691	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:174:0,171,0:0:0:171,0:6053,0:-544.545,-51.4761,0,-544.545,-51.4761,-544.545	1/1:135:0,133,2:0:0:133,2:4665,64:-419.695,-40.037,0,-414.539,-34.5609,-413.937	1/2:95:0,42,52:0:0:42,52:1508,1795:-268.941,-145.922,-133.278,-123.119,0,-107.465	2/2:12:0,0,11:0:0:0,11:0,363:-32.6319,-32.6319,-32.6319,-3.31133,-3.31133,0	1/1:14:0,14,0:0:0:14,0:478,0:-43.3441,-4.21442,0,-43.3441,-4.21442,-43.3441	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:122:2,120,0:2:72:120,0:4227,0:-373.777,-29.8889,0,-374.379,-36.1236,-380.254	1/2:132:0,74,51:0:0:74,51:2651,1793:-362.15,-145.944,-123.668,-216.204,0,-200.852	1/2:24:0,13,11:0:0:13,11:464,379:-68.9638,-31.1297,-27.2163,-38.1841,0,-34.8728	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:86:0,34,52:0:0:34,52:1217,1797:-245.604,-146.355,-136.12,-99.6017,0,-83.9481	1/2:16:0,11,5:0:0:11,5:383,178:-46.0027,-14.8636,-11.5522,-31.4926,0,-29.9874	1/2:111:0,66,45:0:0:66,45:2352,1575:-320.211,-128.492,-108.624,-192.071,0,-178.525	1/2:29:0,14,15:0:0:14,15:504,537:-85.2749,-44.1501,-39.9356,-41.4837,0,-36.9682	1/1:47:0,46,0:0:0:46,0:1628,0:-146.449,-13.8474,0,-146.449,-13.8474,-146.449	1/2:76:0,45,31:0:0:45,31:1600,1095:-219.917,-89.5278,-75.9814,-130.743,0,-121.412	1/2:76:0,55,21:0:0:55,21:1930,738:-217.487,-60.421,-43.8644,-157.417,0,-151.096	1/2:150:0,82,67:0:0:82,67:2908,2345:-427.788,-190.869,-166.184,-236.999,0,-216.83	1/1:62:0,61,0:0:0:61,0:2184,0:-196.466,-18.3628,0,-196.466,-18.3628,-196.466	1/1:117:0,116,0:0:0:116,0:4114,0:-370.127,-34.9195,0,-370.127,-34.9195,-370.127	1/1:104:0,102,0:0:0:102,0:3613,0:-325.071,-30.7051,0,-325.071,-30.7051,-325.071	1/2:10:0,9,1:0:0:9,1:324,36:-29.734,-3.29724,-0.587975,-26.7966,0,-26.4956	1/2:101:0,37,64:0:0:37,64:1312,2242:-289.668,-182.777,-171.639,-107.244,0,-87.9776	1/2:47:0,21,25:0:0:21,25:750,881:-132.929,-71.7792,-65.4575,-61.2014,0,-53.6756	1/2:10:0,6,4:0:0:6,4:203,121:-26.4635,-9.9852,-8.17902,-16.795,0,-15.5909	1/2:104:0,57,47:0:0:57,47:2000,1639:-296.412,-133.649,-116.49,-163.113,0,-148.964	1/2:19:0,7,12:0:0:7,12:248,429:-55.5388,-35.3371,-33.2299,-20.557,0,-16.9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chr08	8299634	.	A	T	100400	PASS	AB=0.597163;ABP=407.683;AC=102;AF=0.542553;AN=188;AO=4163;CIGAR=1X;DP=6394;DPB=6394;DPRA=2.68803;EPP=314.689;EPPR=3.05799;GTI=11;LEN=1;MEANALT=1;MQM=59.9649;MQMR=58.121;NS=94;NUMALT=1;ODDS=1.02531;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146528;QR=79805;RO=2231;RPL=0;RPP=9042.85;RPPR=4847.57;RPR=4163;RUN=1;SAF=2468;SAP=314.689;SAR=1695;SRF=1112;SRP=3.05799;SRR=1119;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.4561	0/1:32:5,27:5:180:27:968:-77.8044,0,-6.9191	0/1:28:13,15:13:464:15:540:-40.5077,0,-33.6687	0/1:114:26,88:26:936:88:3076:-242.754,0,-50.2236	0/1:40:31,9:31:1116:9:320:-17.1012,0,-88.637	0/1:17:13,4:13:468:4:144:-8.19611,0,-37.3421	0/1:25:4,21:4:144:21:715:-57.1049,0,-5.77006	0/1:57:10,47:10:360:47:1684:-134.688,0,-15.5856	0/1:23:3,20:3:108:20:720:-58.2051,0,-3.15148	0/1:57:12,45:12:432:45:1564:-123.889,0,-22.0579	0/1:81:9,72:9:324:72:2450:-196.369,0,-5.11313	1/1:66:6,60:6:216:60:2112:-170.558,-0.0774679,0	1/1:62:3,59:3:108:59:2115:-180.543,-8.58869,0	0/1:101:11,90:11:396:90:3199:-257.73,0,-5.57408	0/1:141:14,127:14:485:127:4425:-355.985,0,-1.23079	0/1:90:14,76:14:504:76:2663:-212.826,0,-18.5877	1/1:62:5,57:5:180:57:2032:-166.6,-2.1118,0	0/1:60:11,49:11:396:49:1760:-140.622,0,-17.9127	0/1:39:11,28:11:396:28:1004:-78.9357,0,-24.2344	0/1:80:13,67:13:464:67:2341:-186.867,0,-17.2483	0/1:90:20,70:20:712:70:2476:-196.002,0,-36.9173	0/1:62:55,7:55:1972:7:248:-4.00033,0,-158.423	0/1:34:10,24:10:360:24:834:-65.1406,0,-22.3129	0/1:69:39,30:39:1396:30:1080:-76.7422,0,-105.157	0/1:36:4,32:4:144:32:1120:-90.2706,0,-2.44176	0/1:104:49,55:49:1747:55:1920:-141.764,0,-126.071	0/1:130:76,54:76:2716:54:1912:-133.224,0,-205.156	0/1:69:9,60:9:324:60:2144:-172.457,0,-8.7183	1/1:76:5,71:5:180:71:2489:-207.716,-6.33094,0	0/1:45:7,38:7:252:38:1336:-106.994,0,-9.47434	0/1:49:31,18:31:1112:18:623:-41.6426,0,-85.6409	0/0:39:39,0:39:1400:0:0:0,-11.7402,-125.277	0/1:88:77,11:77:2768:11:388:-8.76672,0,-221.182	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.985	0/1:28:20,8:20:716:8:284:-17.4745,0,-56.3288	0/1:31:20,11:20:712:11:396:-26.6508,0,-54.7976	1/1:290:9,281:9:320:281:9873:-859.377,-58.161,0	0/1:50:39,11:39:1388:11:388:-20.2059,0,-109.667	0/1:67:37,30:37:1328:30:1067:-76.1722,0,-99.6532	0/1:94:83,11:83:2961:11:392:-7.32324,0,-233.175	0/1:80:46,34:46:1644:34:1208:-84.933,0,-123.849	0/1:52:27,25:27:972:25:884:-64.2248,0,-72.128	0/1:105:70,35:70:2504:35:1248:-81.0167,0,-192.995	0/1:140:82,58:82:2940:58:2034:-141.187,0,-222.674	1/1:107:8,99:8:288:99:3496:-288.589,-5.94746,0	0/1:59:22,37:22:792:37:1287:-98.3692,0,-53.8449	0/1:37:20,17:20:712:17:612:-44.2753,0,-53.2604	0/1:81:52,29:52:1853:29:983:-64.3911,0,-142.419	1/1:52:4,48:4:144:48:1700:-139.99,-2.35775,0	0/1:82:17,65:17:612:65:2298:-182.205,0,-30.7197	0/1:36:5,31:5:176:31:1053:-84.2368,0,-5.34322	0/0:74:71,3:71:2525:3:108:0,-12.201,-216.282	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:22:11,11:11:392:11:375:-27.4552,0,-28.9974	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:110:76,34:76:2712:34:1188:-74.1116,0,-209.393	0/1:35:22,13:22:775:13:464:-31.5615,0,-59.2581	0/1:46:40,6:40:1420:6:216:-5.94313,0,-111.668	0/1:27:14,13:14:496:13:452:-32.8833,0,-35.0381	0/1:30:6,24:6:216:24:856:-68.3302,0,-10.7347	1/1:124:8,116:8:288:116:4095:-342.667,-11.2572,0	0/1:26:22,4:22:788:4:144:-5.48684,0,-63.3707	0/1:55:22,33:22:788:33:1148:-87.0675,0,-54.6881	0/1:65:7,58:7:252:58:2034:-163.765,0,-3.43974	0/1:45:12,33:12:428:33:1158:-90.9799,0,-25.1236	0/1:40:20,20:20:712:20:690:-50.3781,0,-52.3306	0/1:70:13,57:13:464:57:2019:-160.91,0,-21.0079	0/1:73:60,13:60:2140:13:451:-18.9446,0,-170.811	0/1:59:26,33:26:924:33:1172:-88.0267,0,-65.3532	0/1:22:3,19:3:108:19:676:-54.5453,0,-3.45251	0/1:128:27,101:27:968:101:3564:-282.437,0,-48.8469	0/1:31:14,17:14:504:17:596:-44.6335,0,-35.4349	0/1:16:2,14:2:72:14:496:-40.1572,0,-2.02024	0/1:32:21,11:21:756:11:396:-26.3498,0,-58.7343	1/1:87:7,80:7:252:80:2800:-229.213,-3.16065,0	0/1:77:11,66:11:388:66:2309:-184.892,0,-12.0781	0/1:19:10,9:10:352:9:309:-22.4211,0,-25.3526	1/1:26:1,25:1:36:25:892:-77.0014,-4.22851,0	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:82:33,49:33:1188:49:1735:-131.75,0,-82.4624	0/1:50:29,21:29:1044:21:748:-52.5938,0,-79.2233	0/1:113:14,99:14:496:99:3467:-278.229,0,-10.9532	0/1:120:15,105:15:540:105:3711:-298.069,0,-12.8037	1/1:108:8,100:8:288:100:3475:-286.697,-6.25911,0	0/1:129:65,64:65:2331:64:2257:-164.559,0,-171.207	0/1:235:30,205:30:1059:205:7180:-575.097,0,-24.5935	0/1:25:6,19:6:216:19:684:-54.3646,0,-12.2648	0/1:67:41,26:41:1476:26:910:-62.0451,0,-112.967	0/1:69:7,62:7:252:62:2223:-179.563,0,-2.24962	0/1:67:43,24:43:1544:24:864:-57.9136,0,-119.042	0/1:112:64,48:64:2292:48:1688:-118.491,0,-172.467	0/1:83:59,24:59:2108:24:833:-50.2992,0,-164.996	1/1:47:1,46:1:36:46:1591:-139.878,-10.5501,0	1/1:174:3,171:3:108:171:6013:-531.206,-42.3041,0
chr08	8299671	.	T	G	117949	PASS	AB=0.589335;ABP=403.403;AC=102;AF=0.542553;AN=188;AO=4882;CIGAR=1X;DP=8010;DPB=8010;DPRA=2.19768;EPP=9.63058;EPPR=585.86;GTI=6;LEN=1;MEANALT=1.02151;MQM=59.9697;MQMR=56.9207;NS=94;NUMALT=1;ODDS=1.36034;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171833;QR=111684;RO=3126;RPL=4863;RPP=10439.7;RPPR=6695.82;RPR=19;RUN=1;SAF=2361;SAP=14.397;SAR=2521;SRF=1094;SRP=614.193;SRR=2032;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:23,29:23:820:29:1028:-77.1789,0,-58.2134	0/1:57:10,47:10:356:47:1621:-129.012,0,-14.7374	0/1:90:51,39:51:1815:39:1374:-96.8644,0,-135.592	0/1:117:25,92:25:900:92:3222:-254.982,0,-46.0821	0/1:38:31,7:31:1116:7:252:-11.5898,0,-89.239	0/1:32:23,9:23:824:9:324:-19.8729,0,-64.8219	0/1:26:4,22:4:140:22:780:-62.6604,0,-5.09999	0/1:103:24,78:24:864:78:2763:-217.886,0,-46.0744	0/1:54:14,40:14:500:40:1424:-112.202,0,-28.9527	0/1:59:13,46:13:459:46:1631:-129.316,0,-23.8787	0/1:83:10,73:10:360:73:2590:-208.364,0,-7.69297	0/1:146:24,122:24:842:122:4258:-339.455,0,-30.7358	1/1:127:12,115:12:428:115:4048:-326.353,-0.0746389,0	0/1:99:11,88:11:396:88:3085:-248.078,0,-6.17614	0/1:138:14,124:14:496:124:4336:-348.876,0,-3.13116	0/1:94:14,80:14:489:80:2781:-222.235,0,-16.0244	1/1:99:8,91:8:288:91:3175:-259.708,-3.53456,0	0/1:87:14,73:14:496:73:2586:-206.799,0,-18.7411	0/1:84:28,56:28:995:56:1965:-151.836,0,-63.9217	0/1:88:13,75:13:468:75:2639:-211.265,0,-15.1995	0/1:98:20,78:20:720:78:2766:-219.678,0,-35.2263	0/1:65:57,8:57:2029:8:288:-6.70046,0,-162.329	0/1:37:9,28:9:324:28:987:-78.0049,0,-18.1758	0/1:69:38,31:38:1368:31:1103:-78.8087,0,-102.633	0/1:40:4,36:4:144:36:1247:-100.486,0,-1.23764	0/1:108:50,58:50:1800:58:2047:-151.987,0,-129.636	0/1:134:75,59:75:2687:59:2068:-146.051,0,-201.351	0/1:74:9,65:9:320:65:2307:-185.615,0,-6.84965	1/1:77:5,72:5:180:72:2553:-213.474,-6.63197,0	0/1:49:7,42:7:252:42:1470:-117.841,0,-8.27022	0/1:50:31,19:31:1108:19:667:-45.3031,0,-84.9795	0/0:39:39,0:39:1400:0:0:0,-11.7402,-125.272	0/1:88:77,11:77:2760:11:392:-9.12942,0,-220.454	0/0:173:171,2:171:6080:2:72:0,-45.2415,-536.38	0/0:111:101,10:101:3628:10:360:0,-0.670027,-292.64	0/0:270:247,23:247:8861:23:816:0,-7.51638,-710.754	1/1:297:9,288:9:324:288:10131:-882.233,-59.9047,0	0/1:51:40,11:40:1432:11:392:-20.2675,0,-112.737	0/1:121:79,42:79:2828:42:1459:-95.1763,0,-218.052	0/1:93:82,11:82:2915:11:385:-6.9884,0,-229.801	0/1:88:47,41:47:1692:41:1432:-102.682,0,-125.759	0/1:51:27,24:27:968:24:836:-60.2022,0,-72.0685	0/1:111:73,38:73:2607:38:1321:-85.7718,0,-200.409	0/1:141:83,58:83:2939:58:2064:-143.586,0,-221.649	1/1:105:7,98:7:248:98:3437:-286.885,-8.94862,0	0/1:60:23,37:23:828:37:1319:-100.949,0,-56.7823	0/1:72:45,27:45:1608:27:964:-65.4027,0,-123.25	0/1:84:50,34:50:1788:34:1194:-82.4769,0,-135.63	1/1:51:4,47:4:140:47:1675:-138.111,-2.42576,0	0/1:86:17,69:17:608:69:2401:-190.185,0,-29.1542	0/1:41:6,35:6:208:35:1224:-98.1187,0,-6.65425	0/0:75:70,5:70:2496:5:176:0,-6.39223,-207.806	0/1:74:43,31:43:1548:31:1103:-77.3036,0,-115.853	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/0:37:36,1:36:1288:1:36:0,-7.53983,-111.175	0/1:112:78,34:78:2782:34:1212:-75.671,0,-214.894	0/1:36:23,13:23:816:13:456:-30.5362,0,-62.6477	0/1:44:39,5:39:1372:5:172:-2.57265,0,-107.948	0/1:27:14,13:14:496:13:464:-33.9697,0,-35.0381	0/1:32:6,26:6:216:26:932:-74.5659,0,-10.1327	1/1:120:8,112:8:288:112:3986:-332.861,-10.0531,0	0/1:26:22,4:22:773:4:144:-5.48684,0,-62.0105	0/1:59:22,37:22:788:37:1309:-100.349,0,-53.4556	0/1:68:7,61:7:252:61:2167:-174.826,0,-2.53665	0/1:45:12,33:12:423:33:1180:-92.9617,0,-24.5096	0/1:39:19,20:19:684:20:675:-49.324,0,-50.1153	0/1:74:14,60:14:500:60:2106:-167.533,0,-22.7231	0/1:76:61,15:61:2156:15:536:-25.6965,0,-171.401	0/1:62:27,35:27:950:35:1216:-91.0766,0,-66.7526	0/1:50:14,36:14:500:36:1245:-97.2992,0,-30.2313	0/1:132:27,105:27:963:105:3680:-291.668,0,-47.1185	0/1:29:14,15:14:504:15:536:-39.8449,0,-36.037	1/1:55:5,50:5:180:50:1788:-144.704,-0.0584277,0	0/1:62:40,22:40:1432:22:788:-52.5809,0,-110.443	1/1:100:7,93:7:252:93:3264:-270.952,-7.07404,0	0/1:80:12,68:12:428:68:2391:-191.363,0,-14.7764	0/1:51:18,33:18:648:33:1180:-91.1555,0,-42.3514	1/1:47:4,43:4:144:43:1523:-124.067,-0.852838,0	0/1:79:70,9:70:2488:9:324:-5.72449,0,-197.757	0/1:81:30,51:30:1072:51:1806:-138.437,0,-72.3273	0/1:113:82,31:82:2944:31:1100:-65.2939,0,-229.22	0/1:118:15,102:15:536:102:3604:-288.988,0,-12.99	0/1:120:16,104:16:576:104:3653:-292.85,0,-16.0421	1/1:111:8,103:8:279:103:3625:-301.021,-7.98208,0	0/1:132:65,67:65:2336:67:2354:-172.383,0,-170.754	0/1:236:29,207:29:1036:207:7250:-581.468,0,-22.0625	0/1:52:11,41:11:392:41:1429:-113.249,0,-19.8956	0/1:113:62,51:62:2207:51:1751:-123.853,0,-164.843	1/1:122:11,111:11:392:111:3933:-318.609,-1.16968,0	0/1:68:44,24:44:1584:24:856:-56.8911,0,-122.339	0/1:120:67,53:67:2404:53:1842:-129.934,0,-180.087	0/1:85:61,24:61:2173:24:815:-48.0726,0,-170.239	1/1:44:1,43:1:36:43:1529:-134.304,-9.64705,0	1/1:174:3,171:3:108:171:6006:-530.578,-42.3041,0
chr08	8309477	.	GAAAAAAACTG	GAAAAAAATTG,AAAAAAAATTG	134401	PASS	AB=0.492767,0.4951;ABP=3.98407,3.45716;AC=148,34;AF=0.813187,0.186813;AN=182;AO=5035,1073;CIGAR=8M1X2M,1X7M1X2M;DP=6188;DPB=6186;DPRA=0,1.09248;EPP=10910.3,2333;EPPR=11.6962;GTI=2;LEN=1,11;MEANALT=2.16484,2.70732;MQM=59.9996,59.9637;MQMR=60;NS=91;NUMALT=2;ODDS=0.0659022;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=180385,38032;QR=143;RO=4;RPL=3,0;RPP=10910.3,2333;RPPR=11.6962;RPR=5032,1073;RUN=1,1;SAF=0,0;SAP=10936.4,2333;SAR=5035,1073;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,34,0:0:0:34,0:1216,0:-109.491,-10.235,0,-109.491,-10.235,-109.491	1/1:73:0,73,0:0:0:73,0:2624,0:-236.407,-21.9752,0,-236.407,-21.9752,-236.407	1/2:91:0,54,37:0:0:54,37:1940,1305:-264.876,-106.611,-90.3554,-158.621,0,-147.482	1/1:108:0,107,1:0:0:107,1:3844,36:-345.795,-32.2102,0,-342.858,-28.913,-342.557	1/2:23:0,18,5:0:0:18,5:648,171:-67.1079,-14.2203,-8.80176,-53.2333,0,-51.7282	1/2:29:0,20,9:0:0:20,9:720,306:-83.9215,-25.1593,-19.1387,-59.1082,0,-56.3989	1/1:95:0,94,0:0:0:94,0:3368,0:-303.085,-28.2968,0,-303.085,-28.2968,-303.085	1/1:128:0,128,0:0:0:128,0:4585,0:-412.813,-38.5318,0,-412.813,-38.5318,-412.813	1/1:43:0,43,0:0:0:43,0:1540,0:-138.893,-12.9443,0,-138.893,-12.9443,-138.893	1/1:56:0,52,1:0:0:52,1:1868,36:-168.058,-15.6536,0,-165.121,-12.7095,-164.82	1/1:19:0,18,0:0:0:18,0:644,0:-57.9309,-5.41854,0,-57.9309,-5.41854,-57.9309	1/1:74:0,71,0:0:0:71,0:2552,0:-229.573,-21.3731,0,-229.573,-21.3731,-229.573	1/1:64:0,62,0:0:0:62,0:2214,0:-199.208,-18.6639,0,-199.208,-18.6639,-199.208	1/1:55:0,53,0:0:0:53,0:1904,0:-171.278,-15.9546,0,-171.278,-15.9546,-171.278	1/1:56:0,56,0:0:0:56,0:2012,0:-181.353,-16.8577,0,-181.353,-16.8577,-181.353	1/1:40:0,40,0:0:0:40,0:1432,0:-129.178,-12.0412,0,-129.178,-12.0412,-129.178	1/1:45:2,41,0:2:71:41,0:1472,0:-126.072,-6.51463,0,-126.674,-12.3422,-132.46	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	1/1:120:0,120,0:0:0:120,0:4285,0:-385.827,-36.1236,0,-385.827,-36.1236,-385.827	1/1:136:0,136,0:0:0:136,0:4884,0:-439.711,-40.9401,0,-439.711,-40.9401,-439.711	1/2:46:0,22,24:0:0:22,24:792,855:-134.67,-70.0455,-63.4228,-64.983,0,-57.7583	1/1:82:0,82,0:0:0:82,0:2931,0:-264.024,-24.6845,0,-264.024,-24.6845,-264.024	1/2:103:0,51,51:0:0:51,51:1832,1808:-296.87,-147.417,-132.064,-149.576,0,-134.223	1/1:66:0,65,0:0:0:65,0:2328,0:-209.499,-19.567,0,-209.499,-19.567,-209.499	1/2:187:0,106,77:0:0:106,77:3804,2718:-531.615,-221.323,-189.414,-310.288,0,-287.109	1/2:117:0,58,59:0:0:58,59:2080,2070:-338.463,-168.807,-151.347,-170.011,0,-152.25	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6759,-8.42884,0,-90.6759,-8.42884,-90.6759	1/1:173:0,170,0:0:0:170,0:6091,0:-547.966,-51.1751,0,-547.966,-51.1751,-547.966	1/1:147:0,144,2:0:0:144,2:5161,72:-464.32,-43.3483,0,-458.446,-37.3669,-457.843	1/2:94:0,45,47:0:0:45,47:1612,1662:-266.894,-135.425,-121.879,-131.531,0,-117.382	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:156:0,155,0:0:0:155,0:5564,0:-500.528,-46.6597,0,-500.528,-46.6597,-500.528	1/2:102:0,43,58:0:0:43,58:1548,2054:-293.7,-167.388,-154.444,-126.387,0,-108.927	1/2:22:0,12,9:0:0:12,9:432,307:-60.2568,-24.9925,-21.3801,-35.351,0,-32.6417	.:.:.:.:.:.:.:.	1/2:91:0,39,51:0:0:39,51:1396,1810:-261.31,-147.468,-135.728,-113.839,0,-98.4866	1/2:14:0,5,9:0:0:5,9:180,324:-41.4837,-26.7966,-25.2914,-15.0469,0,-12.3376	1/2:88:0,49,39:0:0:49,39:1760,1391:-257.324,-113.748,-98.9976,-143.933,0,-132.193	1/2:28:0,14,13:0:0:14,13:504,464:-79.0075,-37.8801,-33.6657,-41.1797,0,-37.2663	1/1:63:0,62,0:0:0:62,0:2228,0:-200.424,-18.6639,0,-200.424,-18.6639,-200.424	1/2:101:0,64,37:0:0:64,37:2288,1323:-294.792,-108.234,-88.9679,-186.916,0,-175.778	1/2:107:0,35,69:0:0:35,69:1260,2453:-302.72,-199.908,-189.372,-102.825,0,-82.0539	1/2:108:0,42,66:0:0:42,66:1512,2360:-316.163,-192.791,-180.147,-123.731,0,-103.863	1/1:80:0,80,0:0:0:80,0:2876,0:-259.076,-24.0824,0,-259.076,-24.0824,-259.076	1/1:85:0,84,0:0:0:84,0:3016,0:-271.35,-25.2865,0,-271.35,-25.2865,-271.35	1/1:136:0,133,1:0:0:133,1:4771,36:-429.264,-40.037,0,-426.327,-37.0596,-426.026	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:66:0,41,25:0:0:41,25:1448,892:-190.99,-73.0739,-60.7317,-118.271,0,-110.745	1/2:35:0,15,20:0:0:15,20:536,707:-101.638,-57.934,-53.4185,-44.0594,0,-38.0388	1/2:17:0,8,9:0:0:8,9:288,324:-50.2959,-26.7966,-24.3883,-23.8592,0,-21.1499	1/2:62:0,30,32:0:0:30,32:1076,1140:-180.77,-93.0051,-83.9742,-88.122,0,-78.489	1/2:45:0,17,28:0:0:17,28:600,1008:-131.462,-82.6075,-77.49,-49.2103,0,-40.7815	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:59:0,58,0:0:0:58,0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chr08	8311064	.	T	A	27963.9	PASS	AB=0.499402;ABP=3.02069;AC=34;AF=0.182796;AN=186;AO=1671;CIGAR=1X;DP=8757;DPB=8757;DPRA=1.12286;EPP=3631.54;EPPR=15385.7;GTI=0;LEN=1;MEANALT=1;MQM=54.377;MQMR=59.73;NS=93;NUMALT=1;ODDS=2.42681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59745;QR=252337;RO=7084;RPL=1671;RPP=3631.54;RPPR=15385.7;RPR=0;RUN=1;SAF=0;SAP=3631.54;SAR=1671;SRF=0;SRP=15385.7;SRR=7084;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:74:74,0:74:2628:0:0:0,-22.2762,-236.746	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.721	0/1:176:80,96:80:2860:96:3433:-255.308,0,-204.579	0/0:303:303,0:303:10782:0:0:0,-91.2121,-969.429	0/1:82:40,42:40:1431:42:1504:-110.775,0,-104.402	0/1:145:70,75:70:2481:75:2692:-197.437,0,-179.657	0/0:110:110,0:110:3904:0:0:0,-33.1133,-351.534	0/0:164:164,0:164:5845:0:0:0,-49.3689,-525.908	0/0:129:129,0:129:4572:0:0:0,-38.8329,-411.61	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.494	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.315	0/0:116:115,0:115:4120:0:0:0,-34.6184,-370.593	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.101	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.891	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.143	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.632	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.86	0/0:24:24,0:24:856:0:0:0,-7.22472,-76.9881	0/0:144:144,0:144:5119:0:0:0,-43.3483,-460.838	0/0:200:200,0:200:7084:0:0:0,-60.206,-637.35	0/1:87:22,65:22:792:65:2332:-183.875,0,-45.4061	0/0:149:149,0:149:5336:0:0:0,-44.8535,-480.206	0/1:22:10,12:10:356:12:428:-32.1833,0,-25.7447	0/0:89:89,0:89:3161:0:0:0,-26.7917,-284.691	0/1:380:183,197:183:6513:197:7033:-517.914,0,-471.852	0/1:226:123,103:123:4396:103:3672:-260.304,0,-327.737	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.859	0/0:250:250,0:250:8874:0:0:0,-75.2575,-798.644	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.205	0/1:137:82,55:82:2890:55:1964:-135.588,0,-219.083	0/1:2:1,1:1:36:1:36:-2.99111,0,-2.99111	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7858	.:.:.:.:.:.:.:.	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2288	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:164:163,0:163:5837:0:0:0,-49.0679,-524.931	0/1:107:68,39:68:2421:39:1384:-92.0798,0,-185.789	0/1:29:19,10:19:665:10:356:-23.574,0,-51.442	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0736	0/1:150:88,62:88:3098:62:2228:-154.201,0,-233.884	0/1:31:13,18:13:464:18:648:-49.0832,0,-32.7656	0/1:130:59,71:59:2101:71:2514:-186.999,0,-150.214	0/1:35:16,19:16:576:19:684:-51.2845,0,-41.6342	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.968	0/1:116:58,58:58:2080:58:2072:-151.105,0,-152.551	0/1:146:84,62:84:2993:62:2190:-152.859,0,-225.603	0/1:157:88,69:88:3148:69:2461:-174.232,0,-236.278	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.165	0/0:80:80,0:80:2844:0:0:0,-24.0824,-256.109	0/0:60:60,0:60:2136:0:0:0,-18.0618,-192.502	0/1:9:6,3:6:216:3:108:-7.35629,0,-17.0789	0/1:109:71,38:71:2525:38:1353:-88.7717,0,-194.68	0/1:78:35,43:35:1252:43:1544:-115.52,0,-89.5038	0/1:12:6,6:6:208:6:216:-16.1284,0,-15.4458	0/1:181:99,82:99:3485:82:2944:-210.335,0,-259.26	0/1:55:19,36:19:676:36:1296:-100.132,0,-44.609	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:108:108,0:108:3860:0:0:0,-32.5112,-347.574	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.95	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:174:94,80:94:3322:80:2876:-206.493,0,-246.816	0/0:162:162,0:162:5785:0:0:0,-48.7669,-520.738	0/0:54:54,0:54:1917:0:0:0,-16.2556,-172.676	0/0:66:66,0:66:2341:0:0:0,-19.868,-210.948	0/0:193:192,1:192:6841:1:36:0,-54.5031,-612.148	0/1:153:44,109:44:1568:109:3908:-305.191,0,-95.3448	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.473	0/0:60:60,0:60:2136:0:0:0,-18.0618,-192.499	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.897	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:133:133,0:133:4737:0:0:0,-40.037,-426.46	0/1:89:40,49:40:1406:49:1756:-131.036,0,-99.9636	0/0:236:236,0:236:8349:0:0:0,-71.0431,-751.385	0/0:185:185,0:185:6574:0:0:0,-55.6905,-591.741	0/0:156:156,0:156:5572:0:0:0,-46.9607,-501.559	0/0:82:82,0:82:2924:0:0:0,-24.6845,-263.276	0/1:8:6,2:6:216:2:72:-4.41129,0,-17.374	0/0:72:72,0:72:2521:0:0:0,-21.6742,-227.138	0/1:80:41,39:41:1468:39:1404:-102.191,0,-108.322	0/0:164:164,0:164:5811:0:0:0,-49.3689,-523.091	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.485	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:42:20,22:20:716:22:792:-58.7983,0,-52.1163	0/0:119:119,0:119:4245:0:0:0,-35.8226,-382.214	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6048	0/1:49:33,16:33:1172:16:572:-35.5749,0,-91.0207	0/0:72:72,0:72:2588:0:0:0,-21.6742,-232.946	0/1:29:10,19:10:356:19:684:-52.8216,0,-23.6467	0/1:60:27,33:27:972:33:1176:-87.2954,0,-69.7315	0/1:58:19,39:19:665:39:1377:-106.572,0,-42.7098	0/0:198:198,0:198:7088:0:0:0,-59.6039,-637.961	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.893
chr08	8326490	.	CGC	TGT,TGC	174305	PASS	AB=0.477313,0.51917;ABP=15.7206,12.085;AC=151,37;AF=0.803191,0.196809;AN=188;AO=6628,1497;CIGAR=1X1M1X,1X2M;DP=8152;DPB=8152.33;DPRA=0,1.12773;EPP=14144.7,3201.8;EPPR=13.8677;GTI=1;LEN=3,1;MEANALT=1.7766,2.21154;MQM=53.7126,53.6693;MQMR=60;NS=94;NUMALT=2;ODDS=4.19604;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=231290,53471;QR=180;RO=5;RPL=29,6;RPP=14144.7,3201.8;RPPR=13.8677;RPR=6599,1491;RUN=1,1;SAF=6628,1497;SAP=14395.5,3253.7;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38,0:0:0:38,0:1351,0:-120.854,-11.4391,0,-120.854,-11.4391,-120.854	1/1:111:0,110,0:0:0:110,0:3807,0:-340.526,-33.1133,0,-340.526,-33.1133,-340.526	1/2:80:1,38,41:1:36:38,41:1307,1451:-219.988,-114.897,-106.395,-102.442,0,-93.0377	1/1:122:0,122,0:0:0:122,0:4266,0:-381.865,-36.7257,0,-381.865,-36.7257,-381.865	1/2:52:0,31,21:0:0:31,21:1088,756:-149.894,-61.7802,-52.4483,-88.4684,0,-82.1468	1/2:33:0,14,19:0:0:14,19:502,676:-95.2842,-54.7103,-50.4958,-40.9277,0,-35.2081	1/1:133:0,133,0:0:0:133,0:4596,0:-413.079,-40.037,0,-413.079,-40.037,-413.079	1/1:107:0,107,0:0:0:107,0:3655,0:-326.959,-32.2102,0,-326.959,-32.2102,-326.959	1/1:119:0,119,0:0:0:119,0:4112,0:-368.714,-35.8226,0,-368.714,-35.8226,-368.714	1/1:92:0,92,0:0:0:92,0:3221,0:-289.758,-27.6948,0,-289.758,-27.6948,-289.758	1/1:130:0,128,0:0:0:128,0:4432,0:-397.351,-38.5318,0,-397.351,-38.5318,-397.351	1/1:104:0,104,0:0:0:104,0:3689,0:-330.192,-31.3071,0,-330.192,-31.3071,-330.192	1/1:84:0,83,0:0:0:83,0:2904,0:-259.463,-24.9855,0,-259.463,-24.9855,-259.463	1/1:128:0,126,1:0:0:126,1:4378,36:-392.228,-37.9298,0,-389.29,-34.9319,-388.989	1/1:86:0,86,0:0:0:86,0:3057,0:-274.998,-25.8886,0,-274.998,-25.8886,-274.998	1/1:82:0,81,0:0:0:81,0:2825,0:-253.479,-24.3834,0,-253.479,-24.3834,-253.479	1/1:101:0,100,0:0:0:100,0:3531,0:-315.359,-30.103,0,-315.359,-30.103,-315.359	1/1:79:0,79,0:0:0:79,0:2747,0:-246.388,-23.7814,0,-246.388,-23.7814,-246.388	1/1:71:0,71,0:0:0:71,0:2510,0:-224.947,-21.3731,0,-224.947,-21.3731,-224.947	1/1:151:0,149,1:0:0:149,1:5174,36:-464.363,-44.8535,0,-461.425,-41.8411,-461.124	1/1:93:0,93,0:0:0:93,0:3225,0:-289.638,-27.9958,0,-289.638,-27.9958,-289.638	1/2:91:0,33,58:0:0:33,58:1170,2080:-264.944,-169.877,-159.943,-95.4224,0,-77.9627	1/1:63:0,63,0:0:0:63,0:2212,0:-199.029,-18.9649,0,-199.029,-18.9649,-199.029	1/2:129:0,60,69:0:0:60,69:2070,2458:-366.438,-199.574,-181.512,-167.212,0,-146.441	1/1:50:0,49,0:0:0:49,0:1718,0:-154.035,-14.7505,0,-154.035,-14.7505,-154.035	1/2:196:3,82,111:3:108:82,111:2843,3977:-543.533,-314.539,-298.667,-221.074,0,-196.473	1/2:144:0,77,67:0:0:77,67:2691,2391:-412.976,-194.693,-171.513,-218.635,0,-198.466	1/1:37:0,37,0:0:0:37,0:1312,0:-117.94,-11.1381,0,-117.94,-11.1381,-117.94	1/1:152:0,151,1:0:0:151,1:5244,36:-470.446,-45.4555,0,-467.51,-42.1593,-467.209	1/1:81:0,80,1:0:0:80,1:2789,36:-250.384,-24.0824,0,-247.451,-20.7903,-247.15	1/2:98:0,48,50:0:0:48,50:1656,1796:-280.931,-146.583,-132.133,-134.699,0,-119.648	1/2:14:0,9,5:0:0:9,5:315,176:-40.2521,-14.6592,-11.9499,-25.9436,0,-24.4384	1/2:30:0,26,4:0:0:26,4:913,144:-86.1769,-12.1095,-4.28272,-74.426,0,-73.2218	1/2:4:0,2,2:0:0:2,2:64,72:-11.1522,-6.02006,-5.418,-5.46607,0,-4.86401	1/1:13:0,13,0:0:0:13,0:434,0:-39.1108,-3.91339,0,-39.1108,-3.91339,-39.1108	1/1:17:0,17,0:0:0:17,0:590,0:-53.3083,-5.11751,0,-53.3083,-5.11751,-53.3083	1/1:223:0,222,0:0:0:222,0:7794,0:-700.522,-66.8287,0,-700.522,-66.8287,-700.522	1/2:133:0,62,71:0:0:62,71:2089,2540:-375.112,-206.77,-188.106,-168.688,0,-147.315	1/2:79:0,44,35:0:0:44,35:1552,1256:-226.953,-102.094,-88.8489,-125.212,0,-114.676	1/1:5:0,5,0:0:0:5,0:178,0:-16.3469,-1.50515,0,-16.3469,-1.50515,-16.3469	1/2:72:0,41,31:0:0:41,31:1423,1093:-204.531,-89.0471,-76.7049,-115.833,0,-106.501	1/2:45:0,26,19:0:0:26,19:915,684:-130.333,-55.9575,-48.1307,-74.7312,0,-69.0116	1/2:114:0,55,59:0:0:55,59:1919,2112:-326.96,-171.325,-154.768,-155.987,0,-138.226	1/2:85:0,38,47:0:0:38,47:1321,1688:-244.217,-137.603,-126.164,-106.965,0,-92.8168	1/1:81:0,81,0:0:0:81,0:2861,0:-257.335,-24.3834,0,-257.335,-24.3834,-257.335	1/2:104:0,67,37:0:0:67,37:2331,1326:-297.05,-108.399,-88.2301,-189.005,0,-177.866	1/2:64:0,32,32:0:0:32,32:1130,1143:-183.194,-92.2872,-82.6543,-91.2579,0,-81.6249	1/2:100:0,49,51:0:0:49,51:1710,1828:-287.497,-148.939,-134.189,-138.91,0,-123.557	1/1:97:0,97,0:0:0:97,0:3399,0:-305.689,-29.1999,0,-305.689,-29.1999,-305.689	1/1:82:0,82,0:0:0:82,0:2868,0:-257.613,-24.6845,0,-257.613,-24.6845,-257.613	1/1:130:0,129,1:0:0:129,1:4485,36:-403.129,-38.8329,0,-400.191,-35.5356,-399.89	1/2:6:0,2,4:0:0:2,4:70,140:-17.3679,-11.7323,-11.1302,-5.98316,0,-4.77904	1/2:90:0,44,45:0:0:44,45:1517,1616:-253.911,-131.336,-118.09,-122.643,0,-109.097	1/2:31:0,16,15:0:0:16,15:534,540:-87.5707,-44.3994,-39.5829,-43.5183,0,-39.0028	1/2:19:0,4,15:0:0:4,15:144,532:-55.297,-43.5788,-42.3747,-12.076,0,-7.56058	1/2:72:0,28,44:0:0:28,44:981,1563:-206.938,-127.382,-118.953,-79.9069,0,-66.6616	1/2:62:0,36,25:0:0:36,25:1248,885: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chr08	8326577	.	T	C	156017	PASS	AB=0.511516;ABP=6.61136;AC=153;AF=0.81383;AN=188;AO=7205;CIGAR=1X;DP=8745;DPB=8745;DPRA=0;EPP=15648.5;EPPR=3338.39;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.994;MQMR=59.9896;NS=94;NUMALT=1;ODDS=4.09677;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256860;QR=54995;RO=1536;RPL=7205;RPP=15648.5;RPPR=3338.39;RPR=0;RUN=1;SAF=0;SAP=15648.5;SAR=7205;SRF=0;SRP=3338.39;SRR=1536;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	1/1:172:0,172:0:0:172:6134:-552.159,-51.7772,0	0/1:119:50,69:50:1792:69:2476:-187.27,0,-125.74	1/1:271:0,271:0:0:271:9678:-870.97,-81.5791,0	0/1:100:57,43:57:2040:43:1540:-108.79,0,-153.769	0/1:28:10,18:10:356:18:644:-49.8618,0,-23.9524	1/1:181:1,180:1:36:180:6419:-574.197,-50.8882,0	1/1:181:0,181:0:0:181:6445:-580.139,-54.4864,0	1/1:81:0,81:0:0:81:2856:-257.277,-24.3834,0	1/1:100:1,99:1:36:99:3550:-316.109,-26.5047,0	1/1:47:0,47:0:0:47:1676:-151.07,-14.1484,0	1/1:61:0,61:0:0:61:2173:-195.835,-18.3628,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:57:0,57:0:0:57:2033:-183.24,-17.1587,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:53:0,53:0:0:53:1898:-171.098,-15.9546,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:263:0,263:0:0:263:9355:-841.918,-79.1709,0	1/1:135:0,135:0:0:135:4760:-428.558,-40.6391,0	0/1:124:81,43:81:2885:43:1521:-99.8534,0,-222.558	1/1:69:0,69:0:0:69:2460:-221.655,-20.7711,0	0/1:85:39,46:39:1404:46:1652:-123.295,0,-101.072	1/1:63:0,63:0:0:63:2218:-199.882,-18.9649,0	0/1:198:107,91:107:3825:91:3257:-233.745,0,-284.786	0/1:163:81,82:81:2896:82:2891:-211.355,0,-211.808	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:344:1,343:1:36:343:12247:-1098.47,-99.956,0	1/1:112:0,112:0:0:112:3986:-358.929,-33.7154,0	0/1:177:54,123:54:1940:123:4405:-343.34,0,-121.594	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:341:-31.0178,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:174:1,173:1:36:173:6177:-552.43,-48.7809,0	0/1:128:61,67:61:2173:67:2387:-176.554,0,-157.303	0/1:64:28,36:28:1008:36:1273:-95.605,0,-71.7704	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:151:68,83:68:2429:83:2930:-218.478,0,-173.408	0/1:47:18,29:18:644:29:1044:-80.1264,0,-44.1422	0/1:125:65,60:65:2328:60:2129:-154.248,0,-172.151	0/1:72:30,41:30:1072:41:1464:-110.323,0,-75.0596	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:92:51,41:51:1824:41:1460:-104.001,0,-136.746	0/1:140:67,73:67:2404:73:2594:-191.562,0,-174.472	0/1:176:85,91:85:3060:91:3249:-239.649,0,-222.647	1/1:94:0,94:0:0:94:3353:-301.986,-28.2968,0	1/1:152:0,152:0:0:152:5434:-489.186,-45.7566,0	1/1:138:2,136:2:72:136:4797:-425.048,-34.7054,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:107:63,44:63:2264:44:1554:-107.938,0,-171.812	0/1:26:14,12:14:500:12:423:-30.5783,0,-37.5094	0/1:15:9,6:9:320:6:212:-14.9093,0,-24.6269	0/1:133:62,69:62:2224:69:2423:-178.528,0,-160.629	0/1:46:22,24:22:792:24:833:-61.4375,0,-57.7583	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	1/1:70:0,70:0:0:70:2501:-225.341,-21.0721,0	1/1:116:0,116:0:0:116:4152:-373.863,-34.9195,0	1/1:12:0,12:0:0:12:413:-37.4978,-3.61236,0	0/1:148:68,80:68:2436:80:2819:-209.395,0,-174.943	1/1:175:0,175:0:0:175:6216:-559.535,-52.6803,0	1/1:48:2,46:2:72:46:1652:-142.132,-7.61272,0	1/1:109:0,109:0:0:109:3888:-350.114,-32.8123,0	1/1:174:1,173:1:36:173:6193:-553.867,-48.7809,0	0/1:51:30,21:30:1057:21:748:-52.2928,0,-80.0864	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:87:2,85:2:72:85:3056:-268.432,-19.3529,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:92:0,92:0:0:92:3296:-296.859,-27.6948,0	0/1:59:22,37:22:792:37:1313:-100.709,0,-53.8449	1/1:183:0,183:0:0:183:6514:-586.345,-55.0885,0	1/1:162:0,162:0:0:162:5790:-521.212,-48.7669,0	1/1:63:0,63:0:0:63:2254:-203.123,-18.9649,0	1/1:102:0,102:0:0:102:3629:-326.815,-30.7051,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:140:0,140:0:0:140:5006:-450.688,-42.1442,0	0/1:150:69,81:69:2468:81:2893:-215.45,0,-177.22	1/1:169:0,169:0:0:169:6027:-542.531,-50.8741,0	1/1:95:0,95:0:0:95:3369:-303.427,-28.5979,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:105:52,52:52:1872:52:1864:-136.412,0,-137.131	1/1:129:2,127:2:72:127:4533:-401.3,-31.9961,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:84:47,37:47:1692:37:1324:-94.1756,0,-127.28	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	0/1:66:34,32:34:1194:32:1152:-84.1222,0,-87.8933	0/1:79:47,32:47:1684:32:1148:-79.8485,0,-128.066	1/1:119:0,119:0:0:119:4234:-381.24,-35.8226,0	1/1:102:0,102:0:0:102:3648:-328.525,-30.7051,0
chr08	8335248	.	C	T	506812	PASS	AB=0.507578;ABP=7.28844;AC=152;AF=0.808511;AN=188;AO=18407;CIGAR=1X;DP=22682;DPB=22682;DPRA=0;EPP=39973.3;EPPR=9268.68;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.9668;MQMR=58.7021;NS=94;NUMALT=1;ODDS=12.7289;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=656929;QR=150886;RO=4267;RPL=8099;RPP=578.666;RPPR=3.43828;RPR=10308;RUN=1;SAF=8099;SAP=578.666;SAR=10308;SRF=2148;SRP=3.43828;SRR=2119;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:157:0,157:0:0:157:5550:-499.611,-47.2617,0	1/1:352:0,352:0:0:352:12562:-1130.4,-105.963,0	0/1:430:238,191:238:8353:191:6858:-487.794,0,-620.636	1/1:431:2,429:2:72:429:15257:-1366.02,-122.907,0	0/1:218:121,97:121:4279:97:3430:-243.287,0,-319.469	0/1:122:60,62:60:2085:62:2207:-162.169,0,-150.987	1/1:267:0,267:0:0:267:9539:-858.452,-80.375,0	1/1:480:0,480:0:0:480:17140:-1542.19,-144.494,0	1/1:266:0,266:0:0:266:9508:-855.651,-80.074,0	1/1:208:0,208:0:0:208:7380:-664.238,-62.6142,0	1/1:162:2,160:2:72:160:5740:-509.876,-41.9301,0	1/1:229:1,227:1:32:227:8074:-723.462,-65.7754,0	1/1:188:0,188:0:0:188:6715:-604.426,-56.5936,0	1/1:210:0,210:0:0:210:7498:-674.862,-63.2163,0	1/1:188:0,188:0:0:188:6689:-602.08,-56.5936,0	1/1:127:0,127:0:0:127:4514:-406.423,-38.2308,0	1/1:179:0,179:0:0:179:6394:-575.549,-53.8844,0	1/1:172:0,172:0:0:172:6163:-554.753,-51.7772,0	1/1:83:0,83:0:0:83:2936:-264.475,-24.9855,0	1/1:390:2,388:2:72:388:13881:-1242.22,-110.565,0	1/1:361:1,360:1:36:360:12807:-1148.86,-105.074,0	0/1:234:145,89:145:5064:89:3196:-217.422,0,-385.396	1/1:216:0,216:0:0:216:7706:-693.573,-65.0225,0	0/1:225:88,137:88:3139:137:4887:-372.252,0,-214.235	1/1:202:0,202:0:0:202:7239:-651.562,-60.8081,0	0/1:700:358,342:358:12674:342:12223:-889.193,0,-929.473	0/1:646:272,374:272:9628:374:13348:-1006.65,0,-671.228	1/1:82:1,81:1:36:81:2871:-255.027,-21.0862,0	1/1:622:3,619:3:108:619:22172:-1984.82,-177.165,0	1/1:427:17,410:17:589:410:14607:-1261.05,-75.2136,0	0/1:238:85,153:85:3011:153:5425:-416.734,0,-199.137	0/1:20:11,9:11:370:9:320:-23.1218,0,-27.6031	1/1:69:0,68:0:0:68:2435:-219.148,-20.47,0	0/1:22:11,11:11:369:11:387:-28.5433,0,-26.9073	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:54:0,54:0:0:54:1936:-174.514,-16.2556,0	1/1:497:0,497:0:0:497:17712:-1593.21,-149.612,0	0/1:304:142,162:142:5040:162:5768:-427.723,0,-360.377	0/1:130:63,67:63:2214:67:2387:-175.953,0,-159.97	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:267:126,141:126:4470:141:5017:-371.303,0,-321.81	0/1:90:37,53:37:1289:53:1880:-142.379,0,-89.2021	0/1:439:241,198:241:8581:198:7107:-507.518,0,-639.85	0/1:188:81,107:81:2861:107:3823:-287.673,0,-201.007	1/1:151:0,151:0:0:151:5374:-483.789,-45.4555,0	0/1:142:79,63:79:2808:63:2241:-159.205,0,-210.145	0/1:359:159,200:159:5678:200:7155:-535.929,0,-401.791	0/1:439:210,228:210:7428:228:8147:-601.038,0,-536.217	1/1:264:0,264:0:0:264:9456:-850.997,-79.4719,0	1/1:332:1,331:1:36:331:11835:-1061.41,-96.3437,0	1/1:327:0,326:0:0:326:11671:-1049.88,-98.1358,0	0/1:18:10,8:10:343:8:284:-20.4848,0,-25.782	0/1:317:169,148:169:5987:148:5276:-379.55,0,-443.108	0/1:170:81,89:81:2871:89:3187:-235.878,0,-207.145	0/1:47:23,23:23:777:23:810:-59.0121,0,-56.0229	0/1:407:180,226:180:6348:226:8037:-600.768,0,-448.488	0/1:134:71,63:71:2506:63:2264:-163.684,0,-184.979	1/1:26:0,26:0:0:26:924:-83.4764,-7.82678,0	0/1:25:15,10:15:536:10:345:-23.8551,0,-41.0491	1/1:249:0,249:0:0:249:8881:-799.275,-74.9565,0	1/1:308:1,307:1:36:307:10970:-983.6,-89.119,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:501:222,279:222:7895:279:9981:-747.408,0,-558.365	1/1:508:0,508:0:0:508:18131:-1631.39,-152.923,0	1/1:174:0,174:0:0:174:6224:-560.257,-52.3792,0	1/1:292:0,292:0:0:292:10426:-938.258,-87.9008,0	1/1:372:2,370:2:68:370:13220:-1183.13,-105.525,0	0/1:321:194,127:194:6862:127:4528:-311.053,0,-520.644	1/1:112:0,112:0:0:112:3979:-358.293,-33.7154,0	1/1:152:0,152:0:0:152:5447:-490.357,-45.7566,0	1/1:199:0,199:0:0:199:7101:-639.15,-59.905,0	1/1:45:0,45:0:0:45:1620:-146.088,-13.5464,0	1/1:254:0,254:0:0:254:9069:-816.169,-76.4616,0	0/1:179:97,82:97:3468:82:2904:-207.712,0,-258.001	1/1:348:0,348:0:0:348:12368:-1112.66,-104.758,0	1/1:382:2,380:2:72:380:13575:-1214.7,-108.157,0	1/1:435:0,435:0:0:435:15539:-1398.21,-130.948,0	1/1:265:2,263:2:72:263:9395:-838.391,-72.9387,0	0/1:47:15,32:15:516:32:1152:-89.8417,0,-32.608	1/1:277:4,273:4:140:273:9740:-863.478,-70.4435,0	0/1:296:156,140:156:5551:140:4980:-359.243,0,-409.717	1/1:426:6,420:6:212:420:15003:-1330.57,-108.814,0	1/1:221:0,221:0:0:221:7916:-711.688,-66.5276,0	1/1:168:1,167:1:36:167:5961:-533,-46.9748,0	0/1:169:86,83:86:3039:83:2971:-216.748,0,-222.364	1/1:342:0,342:0:0:342:12147:-1093.08,-102.952,0	1/1:80:0,80:0:0:80:2867:-258.258,-24.0824,0	0/1:183:83,100:83:2898:100:3556:-265.16,0,-205.67	1/1:162:0,162:0:0:162:5789:-521.124,-48.7669,0	0/1:135:67,68:67:2350:68:2436:-178.856,0,-171.097	0/1:235:103,131:103:3655:131:4670:-349.659,0,-258.063	0/1:181:120,61:120:4254:61:2184:-142.34,0,-328.374	1/1:316:0,316:0:0:316:11253:-1012.65,-95.1255,0	1/1:254:0,254:0:0:254:9085:-817.623,-76.4616,0
chr08	8335257	.	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chr08	8474901	.	G	T	31487.4	PASS	AB=0.506981;ABP=4.55643;AC=36;AF=0.191489;AN=188;AO=1872;CIGAR=1X;DP=9834;DPB=9834;DPRA=1.08889;EPP=4068.01;EPPR=17207.7;GTI=0;LEN=1;MEANALT=1.02326;MQM=59.9386;MQMR=59.9861;NS=94;NUMALT=1;ODDS=0.54725;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67029;QR=284035;RO=7959;RPL=0;RPP=4068.01;RPPR=17216.3;RPR=1872;RUN=1;SAF=1872;SAP=4068.01;SAR=0;SRF=7958;SRP=17277.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:25,2:25:900:2:72:0,-1.29109,-74.4843	0/0:106:106,0:106:3785:0:0:0,-31.9092,-340.848	0/1:112:50,62:50:1783:62:2208:-165.268,0,-127.037	0/0:258:258,0:258:9234:0:0:0,-77.6657,-830.997	0/1:59:26,33:26:928:33:1188:-89.4678,0,-66.0775	0/1:75:25,50:25:896:50:1792:-138.985,0,-58.3831	0/0:159:159,0:159:5632:0:0:0,-47.8638,-507.001	0/0:167:167,0:167:5976:0:0:0,-50.272,-537.947	0/0:130:129,1:129:4575:1:36:0,-35.5356,-408.316	0/0:161:160,0:160:5706:0:0:0,-48.1648,-513.297	0/0:77:77,0:77:2734:0:0:0,-23.1793,-246.3	0/0:88:88,0:88:3133:0:0:0,-26.4906,-282.195	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.868	0/0:94:94,0:94:3311:0:0:0,-28.2968,-298.204	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.714	0/0:126:126,0:126:4513:0:0:0,-37.9298,-406.336	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:178:178,0:178:6358:0:0:0,-53.5833,-572.308	0/0:186:186,0:186:6623:0:0:0,-55.9916,-596.148	0/1:71:20,51:20:690:51:1828:-143.428,0,-41.0437	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/1:135:73,62:73:2601:62:2232:-160.505,0,-193.698	0/0:81:81,0:81:2874:0:0:0,-24.3834,-258.895	0/1:332:176,156:176:6273:156:5604:-404.538,0,-463.866	0/1:230:107,123:107:3829:123:4416:-328.374,0,-275.568	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:218:217,1:217:7749:1:21:0,-63.5246,-695.339	0/0:111:107,4:107:3817:4:140:0,-20.4698,-330.676	0/1:196:91,105:91:3230:105:3776:-281.035,0,-231.918	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:251:251,0:251:8942:0:0:0,-75.5585,-804.762	0/1:127:60,67:60:2110:67:2404:-178.386,0,-151.935	0/1:64:37,27:37:1328:27:968:-68.1714,0,-100.556	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:174:78,96:78:2804:96:3419:-255.54,0,-200.22	0/1:34:20,13:20:716:13:464:-31.841,0,-54.512	0/1:138:76,62:76:2713:62:2216:-157.668,0,-202.87	0/1:120:50,70:50:1785:70:2508:-189.848,0,-124.807	0/0:96:96,0:96:3437:0:0:0,-28.8989,-309.541	0/1:88:60,28:60:2128:28:1008:-64.5457,0,-165.295	0/1:185:112,73:112:4020:73:2628:-181.076,0,-306.297	0/1:203:118,85:118:4232:85:3029:-211.73,0,-319.95	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:178:177,0:177:6276:0:0:0,-53.2823,-564.574	0/0:111:111,0:111:3946:0:0:0,-33.4143,-355.331	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:136:58,78:58:2050:78:2747:-206.529,0,-143.828	0/1:49:29,20:29:1040:20:720:-50.3783,0,-79.1639	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/1:127:52,75:52:1838:75:2688:-203.934,0,-127.466	0/1:55:25,30:25:900:30:1072:-80.2358,0,-64.7644	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.321	0/0:128:128,0:128:4593:0:0:0,-38.5318,-413.531	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:197:96,101:96:3422:101:3636:-268.084,0,-248.888	0/0:184:184,0:184:6528:0:0:0,-55.3895,-587.603	0/0:78:78,0:78:2774:0:0:0,-23.4803,-249.898	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/0:262:257,5:257:9159:5:180:0,-62.3178,-807.731	0/1:52:14,38:14:500:38:1327:-103.701,0,-29.6826	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:98:98,0:98:3511:0:0:0,-29.5009,-316.198	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/1:57:23,34:23:824:34:1224:-93.3083,0,-57.3246	0/0:205:205,0:205:7303:0:0:0,-61.7111,-657.32	0/0:172:171,1:171:6086:1:36:0,-48.1789,-544.224	0/0:137:137,0:137:4889:0:0:0,-41.2411,-439.845	0/0:134:128,6:128:4585:6:216:0,-20.5475,-393.022	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/1:124:69,55:69:2439:55:1967:-139.977,0,-182.433	0/0:257:257,0:257:9170:0:0:0,-77.3647,-825.273	0/0:127:127,0:127:4556:0:0:0,-38.2308,-410.205	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.128	0/1:123:66,57:66:2364:57:2052:-147.925,0,-175.992	0/0:159:159,0:159:5672:0:0:0,-47.8638,-510.599	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:96:56,40:56:2016:40:1436:-100.639,0,-152.814	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/1:53:28,25:28:1000:25:900:-65.3664,0,-74.3608	0/1:94:48,46:48:1716:46:1656:-121.032,0,-126.429	0/1:70:22,48:22:788:48:1711:-133.203,0,-50.1727	0/0:111:111,0:111:3962:0:0:0,-33.4143,-356.771	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.372
chr08	8474945	.	CTCA	TTCC,TTCA	471064	PASS	AB=0.482445,0.515091;ABP=20.3928,15.8559;AC=152,36;AF=0.808511,0.191489;AN=188;AO=14030,3386;CIGAR=1X2M1X,1X3M;DP=17451;DPB=17480;DPRA=0,1.08515;EPP=30460.1,7355.62;EPPR=3.0103;GTI=0;LEN=4,1;MEANALT=1.84043,2.33333;MQM=59.9761,55.2634;MQMR=60;NS=94;NUMALT=2;ODDS=7.7844;PAIRED=0,0;PAIREDR=0;PAO=58.5,57.5;PQA=1594,1558;PQR=0;PRO=0;QA=485837,120697;QR=72;RO=2;RPL=7680,1849;RPP=276.789,65.4379;RPPR=3.0103;RPR=6350,1537;RUN=1,1;SAF=7679,1849;SAP=275.966,65.4379;SAR=6351,1537;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:92:0,90,2:0:0:90,2:3185,72:-286.517,-27.0927,0,-280.643,-20.858,-280.04	1/1:184:0,184,0:0:0:184,0:6382,0:-574.431,-55.3895,0,-574.431,-55.3895,-574.431	1/2:271:0,138,133:0:0:138,133:4785,4760:-776.46,-387.543,-346.001,-389.149,0,-349.112	1/1:436:0,434,0:0:0:434,0:14962,0:-1345.92,-130.647,0,-1345.92,-130.647,-1345.92	1/2:96:0,46,49:0:0:46,49:1598,1741:-271.683,-141.773,-127.925,-129.989,0,-115.239	1/2:127:0,47,80:0:0:47,80:1623,2849:-364.111,-232.253,-218.104,-132.208,0,-108.125	1/1:268:0,267,0:0:0:267,0:9271,0:-834.103,-80.375,0,-834.103,-80.375,-834.103	1/1:265:0,264,1:0:0:264,1:9148,36:-822.792,-79.4719,0,-819.854,-76.1747,-819.553	1/1:273:0,271,0:0:0:271,0:9370,0:-842.881,-81.5791,0,-842.881,-81.5791,-842.881	1/1:225:0,225,0:0:0:225,0:7686,0:-691.632,-67.7318,0,-691.632,-67.7318,-691.632	1/1:121:0,121,0:0:0:121,0:4216,0:-379.572,-36.4246,0,-379.572,-36.4246,-379.572	1/1:221:0,219,2:0:0:219,2:7552,72:-679.258,-65.9256,0,-673.383,-59.7511,-672.781	1/1:166:0,166,0:0:0:166,0:5807,0:-522.76,-49.971,0,-522.76,-49.971,-522.76	1/1:135:0,134,0:0:0:134,0:4611,0:-414.858,-40.338,0,-414.858,-40.338,-414.858	1/1:164:0,164,0:0:0:164,0:5694,0:-512.596,-49.3689,0,-512.596,-49.3689,-512.596	1/1:131:0,131,0:0:0:131,0:4531,0:-407.964,-39.4349,0,-407.964,-39.4349,-407.964	1/1:144:0,144,0:0:0:144,0:4982,0:-448.488,-43.3483,0,-448.488,-43.3483,-448.488	1/1:134:0,134,0:0:0:134,0:4623,0:-416.133,-40.338,0,-416.133,-40.338,-416.133	1/1:61:0,61,0:0:0:61,0:2141,0:-192.958,-18.3628,0,-192.958,-18.3628,-192.958	1/1:379:0,379,0:0:0:379,0:13304,0:-1197.14,-114.09,0,-1197.14,-114.09,-1197.14	1/1:308:0,307,0:0:0:307,0:10445,0:-939.716,-92.4162,0,-939.716,-92.4162,-939.716	1/2:152:0,42,109:0:0:42,109:1445,3867:-431.043,-313.69,-301.047,-117.374,0,-84.5616	1/1:145:0,144,0:0:0:144,0:5001,0:-449.891,-43.3483,0,-449.891,-43.3483,-449.891	1/2:226:0,125,101:0:0:125,101:4326,3608:-645.135,-293.589,-255.961,-351.601,0,-321.197	1/1:197:0,197,0:0:0:197,0:6831,0:-614.823,-59.3029,0,-614.823,-59.3029,-614.823	1/2:489:0,247,242:0:0:247,242:8466,8622:-1388.02,-700.746,-626.391,-687.328,0,-614.479	1/2:529:0,247,280:0:0:247,280:8492,10000:-1502.34,-812.725,-738.371,-689.583,0,-605.294	1/1:81:0,81,0:0:0:81,0:2849,0:-256.652,-24.3834,0,-256.652,-24.3834,-256.652	1/1:331:0,330,1:0:0:330,1:11387,36:-1024.4,-99.3399,0,-1021.48,-96.0622,-1021.17	1/1:201:0,189,12:0:0:189,12:6613,432:-594.794,-56.8947,0,-559.654,-21.4516,-556.042	1/2:254:0,121,131:0:0:121,131:4207,4689:-723.878,-381.835,-345.41,-342.036,0,-302.601	1/2:19:0,7,12:0:0:7,12:235,428:-54.1997,-35.1717,-33.0645,-19.371,0,-15.7587	1/1:38:0,38,0:0:0:38,0:1326,0:-119.58,-11.4391,0,-119.58,-11.4391,-119.58	1/2:10:0,7,3:0:0:7,3:246,108:-29.1684,-9.15007,-7.04286,-20.3751,0,-19.472	1/1:13:0,13,0:0:0:13,0:417,0:-37.8389,-3.91339,0,-37.8389,-3.91339,-37.8389	1/1:29:0,29,0:0:0:29,0:1027,0:-92.7434,-8.72987,0,-92.7434,-8.72987,-92.7434	1/1:442:0,441,0:0:0:441,0:15306,0:-1376.95,-132.754,0,-1376.95,-132.754,-1376.95	1/2:202:0,96,105:0:0:96,105:3276,3718:-567.862,-302.04,-273.141,-265.76,0,-234.152	1/2:108:0,58,49:0:0:58,49:2022,1739:-305.896,-141.459,-123.999,-164.429,0,-149.678	1/1:6:0,6,0:0:0:6,0:202,0:-18.5103,-1.80618,0,-18.5103,-1.80618,-18.5103	1/2:266:0,124,140:0:0:124,140:4292,4981:-753.589,-404.798,-367.47,-348.776,0,-306.632	1/2:54:0,29,25:0:0:29,25:1020,883:-155.159,-72.128,-63.3981,-83.3829,0,-75.8571	1/2:285:0,127,156:0:0:127,156:4400,5568:-810.043,-452.441,-414.21,-357.627,0,-310.667	1/2:178:1,80,96:1:36:80,96:2793,3423:-502.287,-275.407,-254.262,-224.244,0,-198.283	1/1:157:0,156,1:0:0:156,1:5358,36:-481.772,-46.9607,0,-478.835,-43.6634,-478.534	1/2:186:0,118,67:0:0:118,67:4110,2396:-528.967,-194.748,-159.226,-334.364,0,-314.195	1/2:256:0,140,116:0:0:140,116:4874,4131:-732.848,-336.517,-294.373,-396.623,0,-361.704	1/2:329:0,182,147:0:0:182,147:6275,5244:-935.935,-426.21,-371.422,-509.897,0,-465.646	1/1:176:0,175,0:0:0:175,0:6051,0:-544.355,-52.6803,0,-544.355,-52.6803,-544.355	1/1:220:0,220,0:0:0:220,0:7629,0:-686.619,-66.2266,0,-686.619,-66.2266,-686.619	1/1:241:0,239,0:0:0:239,0:8259,0:-742.962,-71.9462,0,-742.962,-71.9462,-742.962	1/2:12:1,7,4:1:36:7,4:248,144:-28.693,-8.79421,-9.62451,-17.26,0,-18.994	1/2:242:0,102,140:0:0:102,140:3533,5005:-694.715,-407.586,-376.881,-287.419,0,-245.275	1/2:113:0,67,46:0:0:67,46:2327,1613:-320.319,-131.158,-110.989,-189.509,0,-175.662	1/2:25:0,9,16:0:0:9,16:322,564:-72.5069,-46.2476,-43.5383,-26.615,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chr08	8474961	.	C	T	22896.7	PASS	AB=0.502689;ABP=3.18548;AC=35;AF=0.188172;AN=186;AO=1413;CIGAR=1X;DP=7690;DPB=7690;DPRA=0.997768;EPP=3071.3;EPPR=13557.4;GTI=1;LEN=1;MEANALT=1.02632;MQM=49.6044;MQMR=59.9729;NS=93;NUMALT=1;ODDS=0.0734257;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50037;QR=223987;RO=6274;RPL=0;RPP=3071.3;RPPR=13566.1;RPR=1413;RUN=1;SAF=0;SAP=3071.3;SAR=1413;SRF=1;SRP=13618.1;SRR=6273;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.914	0/1:157:90,67:90:3220:67:2347:-163.529,0,-242.742	0/0:170:170,0:170:6078:0:0:0,-51.1751,-547.122	0/1:33:20,13:20:712:13:460:-31.653,0,-54.4727	0/1:53:22,31:22:783:31:1116:-84.4744,0,-54.8384	0/0:105:105,0:105:3750:0:0:0,-31.6081,-337.699	0/0:107:107,0:107:3821:0:0:0,-32.2102,-344.086	0/0:150:150,0:150:5340:0:0:0,-45.1545,-480.734	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.803	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:135:135,0:135:4782:0:0:0,-40.639,-430.529	0/0:79:79,0:79:2811:0:0:0,-23.7814,-253.23	0/0:42:42,0:42:1486:0:0:0,-12.6433,-134.033	0/0:94:94,0:94:3348:0:0:0,-28.2968,-301.536	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.555	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:202:202,0:202:7230:0:0:0,-60.8081,-650.752	0/0:120:120,0:120:4287:0:0:0,-36.1236,-386.003	0/1:81:22,59:22:788:59:2068:-160.264,0,-46.8614	0/0:104:104,0:104:3707:0:0:0,-31.3071,-333.827	0/1:90:53,37:53:1904:37:1316:-90.8444,0,-144.545	0/0:115:114,0:114:4080:0:0:0,-34.3174,-367.027	0/1:155:76,79:76:2715:79:2792:-202.995,0,-197.916	0/1:291:142,149:142:5060:149:5316:-388.735,0,-367.945	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:120:118,1:118:4215:1:36:0,-32.6027,-375.948	0/0:88:82,6:82:2927:6:216:0,-6.78386,-243.953	0/1:58:30,28:30:1076:28:989:-71.141,0,-79.6931	0/1:10:4,6:4:144:6:216:-16.6965,0,-10.3033	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:4:2,2:2:72:2:72:-5.6102,0,-5.6326	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:192:192,0:192:6868:0:0:0,-57.7978,-618.167	0/1:78:39,39:39:1375:39:1381:-100.355,0,-100.568	0/1:39:21,18:21:741:18:630:-45.1151,0,-55.2652	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:88:50,38:50:1796:38:1356:-94.8335,0,-135.432	0/1:20:10,10:10:356:10:352:-25.8787,0,-26.3606	0/1:138:53,85:53:1891:85:3016:-229.036,0,-128.908	0/1:56:31,25:31:1108:25:880:-61.837,0,-83.1733	0/0:67:67,0:67:2370:0:0:0,-20.169,-213.558	0/1:100:60,40:60:2152:40:1428:-97.9064,0,-163.844	0/1:75:32,43:32:1140:43:1509:-113.078,0,-80.332	0/1:129:68,61:68:2415:61:2146:-153.169,0,-178.772	0/0:93:93,0:93:3318:0:0:0,-27.9958,-298.838	0/0:49:49,0:49:1735:0:0:0,-14.7505,-156.434	0/0:136:136,0:136:4851:0:0:0,-40.9401,-436.745	0/1:4:3,1:3:108:1:36:-2.37465,0,-8.87105	0/1:108:51,57:51:1819:57:2036:-150.424,0,-131.476	0/1:58:37,21:37:1323:21:744:-49.4672,0,-101.912	0/1:6:3,3:3:108:3:108:-8.23597,0,-8.26899	0/1:163:78,85:78:2792:85:2991:-218.615,0,-202.453	0/1:70:46,24:46:1636:24:852:-55.5652,0,-126.457	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	.:.:.:.:.:.:.:.	0/0:73:73,0:73:2602:0:0:0,-21.9752,-234.428	0/0:81:81,0:81:2867:0:0:0,-24.3834,-258.266	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:109:60,49:60:2147:49:1740:-123.273,0,-160.685	0/0:180:180,0:180:6428:0:0:0,-54.1854,-578.608	0/0:51:50,0:50:1779:0:0:0,-15.0515,-160.141	0/0:61:61,0:61:2164:0:0:0,-18.3628,-195.025	0/0:141:137,4:137:4906:4:144:0,-29.2038,-428.448	0/1:96:27,69:27:959:69:2413:-187.32,0,-57.7265	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:144:144,0:144:5160:0:0:0,-43.3483,-464.54	0/1:84:45,39:45:1612:39:1384:-98.4474,0,-120.084	0/0:131:131,0:131:4695:0:0:0,-39.4349,-422.704	0/0:137:137,0:137:4915:0:0:0,-41.2411,-442.499	0/0:75:75,0:75:2687:0:0:0,-22.5772,-242.074	0/0:61:61,0:61:2166:0:0:0,-18.3628,-195.196	0/1:16:4,12:4:144:12:424:-33.5749,0,-8.49714	0/0:89:89,0:89:3174:0:0:0,-26.7917,-285.884	0/1:125:52,73:52:1860:73:2586:-194.157,0,-130.048	0/0:144:144,0:144:5143:0:0:0,-43.3483,-462.967	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:48:33,15:33:1179:15:536:-33.8523,0,-91.9678	0/0:121:121,0:121:4315:0:0:0,-36.4246,-388.527	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:67:35,32:35:1239:32:1125:-80.3082,0,-91.6446	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:27:15,12:15:519:12:428:-30.2032,0,-38.9089	0/1:74:41,33:41:1463:33:1176:-82.9077,0,-109.689	0/1:79:32,47:32:1140:47:1672:-126.209,0,-79.1278	0/0:137:137,0:137:4889:0:0:0,-41.2411,-440.162	0/0:115:115,0:115:4103:0:0:0,-34.6184,-369.456
chr08	8474976	.	C	T	26212.5	PASS	AB=0.525383;ABP=19.4358;AC=37;AF=0.196809;AN=188;AO=1564;CIGAR=1X;DP=7843;DPB=7843;DPRA=1.08942;EPP=3399.19;EPPR=13479.6;GTI=1;LEN=1;MEANALT=1;MQM=49.5889;MQMR=59.9648;NS=94;NUMALT=1;ODDS=4.19031;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56048;QR=224555;RO=6278;RPL=1564;RPP=3399.19;RPPR=13488.3;RPR=0;RUN=1;SAF=0;SAP=3399.19;SAR=1564;SRF=1;SRP=13626.8;SRR=6277;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/1:166:93,73:93:3312:73:2616:-184.84,0,-248.281	0/0:178:178,0:178:6357:0:0:0,-53.5833,-572.221	0/1:36:20,16:20:716:16:572:-40.7828,0,-53.9306	0/1:55:22,33:22:792:33:1173:-88.9828,0,-55.049	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/0:151:151,0:151:5404:0:0:0,-45.4555,-486.491	0/0:69:69,0:69:2442:0:0:0,-20.7711,-220.032	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.798	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:42:42,0:42:1485:0:0:0,-12.6433,-133.943	0/0:94:93,1:93:3323:1:36:0,-24.6985,-295.69	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.323	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:203:202,0:202:7260:0:0:0,-60.8081,-653.089	0/0:123:123,0:123:4374:0:0:0,-37.0267,-393.831	0/1:82:21,61:21:756:61:2196:-171.187,0,-43.6828	0/0:102:102,0:102:3632:0:0:0,-30.7051,-327.082	0/1:97:55,42:55:1961:42:1508:-105.884,0,-147.564	0/0:112:108,4:108:3872:4:144:0,-20.4017,-335.355	0/1:165:76,89:76:2709:89:3181:-233.422,0,-194.365	0/1:306:142,164:142:5100:164:5894:-435.917,0,-367.026	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:119:118,1:118:4212:1:36:0,-32.2438,-375.672	0/0:88:80,8:80:2863:8:269:0,-2.04391,-233.455	0/1:60:30,30:30:1072:30:1080:-78.6644,0,-78.7307	0/1:10:4,6:4:144:6:216:-16.6965,0,-10.3033	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:4:2,2:2:72:2:72:-5.6102,0,-5.6326	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:192:192,0:192:6896:0:0:0,-57.7978,-620.682	0/1:79:40,39:40:1432:39:1400:-101.748,0,-105.396	0/1:44:23,21:23:828:21:756:-54.8903,0,-61.5926	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:93:48,45:48:1724:45:1588:-114.359,0,-127.45	0/1:21:10,11:10:360:11:396:-29.512,0,-26.4227	0/1:150:55,95:55:1934:95:3407:-260.415,0,-129.171	0/1:59:31,28:31:1112:28:1008:-72.1986,0,-82.6306	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/1:103:61,42:61:2188:42:1504:-102.535,0,-166.18	0/1:78:32,46:32:1124:46:1656:-125.324,0,-77.9849	0/1:133:69,64:69:2461:64:2285:-164.374,0,-181.704	0/0:93:93,0:93:3306:0:0:0,-27.9958,-297.757	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.213	0/1:4:3,1:3:108:1:36:-2.37465,0,-8.87105	0/1:113:50,63:50:1796:63:2264:-169.201,0,-127.903	0/1:64:37,27:37:1317:27:972:-68.0378,0,-99.5639	0/1:6:3,3:3:108:3:108:-8.23597,0,-8.26899	0/1:163:75,88:75:2679:88:3148:-232.422,0,-192.287	0/1:72:45,27:45:1597:27:953:-63.9684,0,-122.344	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.722	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:114:58,56:58:2069:56:2008:-145.716,0,-152.162	0/0:177:176,1:176:6278:1:36:0,-49.684,-561.514	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.311	0/0:65:65,0:65:2305:0:0:0,-19.5669,-207.71	0/0:144:139,5:139:4961:5:180:0,-26.886,-430.172	0/1:109:27,82:27:964:82:2944:-230.398,0,-54.2646	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:141:141,0:141:5033:0:0:0,-42.4452,-453.116	0/1:86:46,40:46:1648:40:1440:-102.842,0,-122.72	0/0:135:135,0:135:4837:0:0:0,-40.639,-435.473	0/0:139:139,0:139:4988:0:0:0,-41.8432,-449.067	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.14	0/1:16:5,11:5:180:11:396:-31.0483,0,-11.7356	0/0:87:87,0:87:3088:0:0:0,-26.1896,-278.147	0/1:135:52,83:52:1808:83:2976:-225.938,0,-122.357	0/0:141:141,0:141:5033:0:0:0,-42.4452,-453.097	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:80:80,0:80:2857:0:0:0,-24.0824,-257.366	0/1:51:33,18:33:1188:18:638:-42.1054,0,-91.8761	0/0:121:121,0:121:4352:0:0:0,-36.4246,-391.853	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:69:36,33:36:1288:33:1180:-84.5319,0,-95.4512	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.975	0/1:27:16,11:16:576:11:396:-27.1863,0,-44.0472	0/1:76:40,36:40:1436:36:1292:-92.6957,0,-106.659	0/1:89:33,56:33:1188:56:2016:-153.529,0,-80.4369	0/0:140:140,0:140:5019:0:0:0,-42.1442,-451.855	0/0:117:117,0:117:4181:0:0:0,-35.2205,-376.471
chr08	8563991	.	CGGCAGCT	CGGCGGCC,CGGCGGCT	147043	PASS	AB=0.522696,0.464924;ABP=12.7685,26.317;AC=153,35;AF=0.81383,0.18617;AN=188;AO=5315,1019;CIGAR=4M1X2M1X,4M1X3M;DP=6412;DPB=6412.62;DPRA=0,1.00045;EPP=8962.83,2189.76;EPPR=5.18177;GTI=3;LEN=8,1;MEANALT=2.1383,2.74359;MQM=59.9834,59.9019;MQMR=60;NS=94;NUMALT=2;ODDS=1.49444;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=29.5,0;PQR=0;PRO=0;QA=186653,36474;QR=36;RO=1;RPL=316,1016;RPP=8962.83,2189.76;RPPR=5.18177;RPR=4999,3;RUN=1,1;SAF=0,0;SAP=11544.4,2215.74;SAR=5315,1019;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36,0:0:0:36,0:1271,0:-114.693,-10.8371,0,-114.693,-10.8371,-114.693	1/1:47:0,46,0:0:0:46,0:1618,0:-145.547,-13.8474,0,-145.547,-13.8474,-145.547	1/2:164:0,100,62:0:0:100,62:3528,2220:-468.396,-181.118,-151.015,-287.351,0,-268.687	1/1:194:0,191,0:0:0:191,0:6732,0:-605.624,-57.4967,0,-605.624,-57.4967,-605.624	1/2:27:0,10,17:0:0:10,17:347,604:-77.7772,-49.5731,-46.5628,-28.554,0,-23.4365	1/2:16:0,5,10:0:0:5,10:170,360:-43.2313,-29.4468,-27.9416,-13.8384,0,-10.8281	1/1:72:0,69,0:0:0:69,0:2442,0:-219.681,-20.7711,0,-219.681,-20.7711,-219.681	1/1:86:0,85,0:0:0:85,0:2988,0:-268.895,-25.5876,0,-268.895,-25.5876,-268.895	1/1:126:0,121,0:0:0:121,0:4229,0:-380.438,-36.4246,0,-380.438,-36.4246,-380.438	1/1:49:0,49,0:0:0:49,0:1730,0:-155.985,-14.7505,0,-155.985,-14.7505,-155.985	1/1:20:0,20,0:0:0:20,0:690,0:-62.4176,-6.0206,0,-62.4176,-6.0206,-62.4176	1/1:78:0,78,0:0:0:78,0:2741,0:-246.936,-23.4803,0,-246.936,-23.4803,-246.936	1/1:54:0,54,0:0:0:54,0:1903,0:-171.547,-16.2556,0,-171.547,-16.2556,-171.547	1/1:22:0,21,0:0:0:21,0:747,0:-67.1955,-6.32163,0,-67.1955,-6.32163,-67.1955	1/1:48:0,48,0:0:0:48,0:1702,0:-153.466,-14.4494,0,-153.466,-14.4494,-153.466	1/1:40:0,40,0:0:0:40,0:1377,0:-124.222,-12.0412,0,-124.222,-12.0412,-124.222	1/1:24:0,24,0:0:0:24,0:842,0:-76.0968,-7.22472,0,-76.0968,-7.22472,-76.0968	1/1:29:0,29,0:0:0:29,0:1027,0:-92.7432,-8.72987,0,-92.7432,-8.72987,-92.7432	1/1:32:0,32,0:0:0:32,0:1113,0:-100.475,-9.63296,0,-100.475,-9.63296,-100.475	1/1:64:0,64,0:0:0:64,0:2254,0:-203.124,-19.2659,0,-203.124,-19.2659,-203.124	1/1:155:0,152,0:0:0:152,0:5345,0:-480.858,-45.7566,0,-480.858,-45.7566,-480.858	1/2:73:1,33,37:1:36:33,37:1151,1332:-199.049,-105.743,-98.7466,-90.6638,0,-82.4634	1/1:119:0,117,0:0:0:117,0:4124,0:-371.091,-35.2205,0,-371.091,-35.2205,-371.091	1/2:40:0,22,17:0:0:22,17:749,612:-110.686,-49.9361,-43.3134,-60.742,0,-55.6245	1/1:62:0,62,0:0:0:62,0:2220,0:-200.064,-18.6639,0,-200.064,-18.6639,-200.064	1/2:160:0,86,71:0:0:86,71:3039,2548:-455.297,-207.8,-181.912,-247.549,0,-226.175	1/2:169:0,90,79:0:0:90,79:3145,2828:-486.806,-230.978,-203.885,-256.183,0,-232.401	1/1:24:0,24,0:0:0:24,0:828,0:-74.833,-7.22472,0,-74.833,-7.22472,-74.833	1/1:540:0,534,0:0:0:534,0:18836,0:-1694.54,-160.75,0,-1694.54,-160.75,-1694.54	1/1:69:0,67,2:0:0:67,2:2366,72:-212.839,-20.169,0,-206.964,-13.9343,-206.362	1/2:53:0,23,30:0:0:23,30:817,1060:-153.254,-86.6804,-79.7567,-66.9279,0,-57.897	1/2:16:0,10,5:0:0:10,5:354,180:-43.5941,-14.7536,-11.7433,-28.9031,0,-27.3979	1/1:24:0,24,0:0:0:24,0:831,0:-75.105,-7.22472,0,-75.105,-7.22472,-75.105	1/1:7:0,7,0:0:0:7,0:251,0:-22.9379,-2.10721,0,-22.9379,-2.10721,-22.9379	1/1:16:0,12,0:0:0:12,0:430,0:-38.0541,-3.61236,0,-38.0541,-3.61236,-38.0541	1/1:18:0,18,0:0:0:18,0:631,0:-57.1156,-5.41854,0,-57.1156,-5.41854,-57.1156	1/1:128:0,128,0:0:0:128,0:4481,0:-403.469,-38.5318,0,-403.469,-38.5318,-403.469	1/2:113:0,78,32:0:0:78,32:2732,1148:-315.912,-93.6523,-70.1719,-222.278,0,-212.645	1/2:47:0,19,28:0:0:19,28:653,1000:-134.906,-81.8865,-76.167,-53.3687,0,-44.9399	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:109:0,48,58:0:0:48,58:1678,2076:-305.861,-169.358,-154.908,-136.561,0,-119.102	1/2:19:0,11,8:0:0:11,8:394,288:-55.9903,-23.8592,-20.5478,-32.4902,0,-30.082	1/2:130:0,75,54:0:0:75,54:2646,1940:-373.715,-158.261,-135.683,-215.451,0,-199.195	1/2:47:0,15,32:0:0:15,32:539,1152:-138.329,-94.3572,-89.8417,-44.3307,0,-34.6978	1/1:44:0,44,0:0:0:44,0:1559,0:-140.601,-13.2453,0,-140.601,-13.2453,-140.601	1/2:84:0,52,29:0:0:52,29:1827,1021:-231.815,-83.1113,-67.4577,-148.696,0,-139.967	1/2:52:0,42,9:0:0:42,9:1472,320:-145.849,-26.0737,-13.4304,-119.77,0,-117.061	1/2:92:0,54,36:0:0:54,36:1915,1296:-261.754,-105.74,-89.4845,-156.012,0,-145.175	1/1:73:0,72,0:0:0:72,0:2563,0:-230.561,-21.6742,0,-230.561,-21.6742,-230.561	1/1:71:0,71,0:0:0:71,0:2482,0:-223.634,-21.3731,0,-223.634,-21.3731,-223.634	1/1:73:0,72,0:0:0:72,0:2517,0:-226.503,-21.6742,0,-226.503,-21.6742,-226.503	1/2:9:0,6,2:0:0:6,2:215,72:-23.4086,-5.87483,-4.06865,-17.5334,0,-16.9313	1/2:57:0,25,32:0:0:25,32:880,1144:-165.273,-93.6356,-86.1099,-71.9919,0,-62.3589	1/2:38:0,8,30:0:0:8,30:288,1076:-111.622,-88.122,-85.7137,-23.8592,0,-14.8283	1/2:14:0,10,4:0:0:10,4:358,144:-41.3028,-12.1095,-9.0992,-29.5526,0,-28.3485	1/2:78:0,42,36:0:0:42,36:1479,1284:-225.301,-104.897,-92.2533,-120.759,0,-109.922	1/2:32:0,22,10:0:0:22,10:766,356:-91.6525,-29.3709,-22.74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chr08	8616215	.	TTT	CTG,TTG	122690	PASS	AB=0.508872,0.488266;ABP=5.39929,7.18917;AC=152,36;AF=0.808511,0.191489;AN=188;AO=7406,1720;CIGAR=1X1M1X,2M1X;DP=9150;DPB=9150.67;DPRA=0,1.1996;EPP=16084.9,3737.94;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.67021,2.2093;MQM=25.5487,36.8843;MQMR=50;NS=94;NUMALT=2;ODDS=1.20729;PAIRED=0,0;PAIREDR=0;PAO=1,0.5;PQA=27,0;PQR=0;PRO=0.5;QA=259434,61162;QR=23;RO=1;RPL=7406,1720;RPP=16084.9,3737.94;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=7406,1720;SAP=16084.9,3737.94;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38,0:0:0:38,0:1332,0:-87.9268,-11.4391,0,-87.9268,-11.4391,-87.9268	1/1:117:0,117,0:0:0:117,0:4121,0:-267.41,-35.2205,0,-267.41,-35.2205,-267.41	1/2:110:0,50,59:0:0:50,59:1744,2104:-258.995,-160.127,-145.076,-98.9021,0,-81.1413	1/1:295:0,293,0:0:0:293,0:10263,0:-645.551,-88.2018,0,-645.551,-88.2018,-645.551	1/2:70:0,36,34:0:0:36,34:1257,1201:-159.983,-89.8815,-79.0444,-70.3906,0,-60.1556	1/2:36:0,18,18:0:0:18,18:617,648:-85.0271,-49.7993,-44.3808,-35.5228,0,-30.1042	1/1:119:0,118,1:0:0:118,1:4134,36:-261.978,-35.5215,0,-259.267,-32.4764,-258.966	1/1:205:0,205,0:0:0:205,0:7177,0:-468.138,-61.7112,0,-468.138,-61.7112,-468.138	1/1:86:0,86,0:0:0:86,0:2979,0:-200.145,-25.8886,0,-200.145,-25.8886,-200.145	1/1:108:0,107,0:0:0:107,0:3761,0:-238.16,-32.2102,0,-238.16,-32.2102,-238.16	1/1:34:0,34,0:0:0:34,0:1187,0:-76.3369,-10.235,0,-76.3369,-10.235,-76.3369	1/1:53:0,53,0:0:0:53,0:1847,0:-122.814,-15.9546,0,-122.814,-15.9546,-122.814	1/1:50:0,50,0:0:0:50,0:1755,0:-116.645,-15.0515,0,-116.645,-15.0515,-116.645	1/1:63:0,63,0:0:0:63,0:2205,0:-141.007,-18.9649,0,-141.007,-18.9649,-141.007	1/1:57:0,57,0:0:0:57,0:1983,0:-127.788,-17.1587,0,-127.788,-17.1587,-127.788	1/1:45:0,45,0:0:0:45,0:1582,0:-99.5071,-13.5464,0,-99.5071,-13.5464,-99.5071	1/1:54:0,54,0:0:0:54,0:1910,0:-126.83,-16.2556,0,-126.83,-16.2556,-126.83	1/1:43:0,43,0:0:0:43,0:1508,0:-98.6729,-12.9443,0,-98.6729,-12.9443,-98.6729	1/1:28:0,28,0:0:0:28,0:995,0:-64.593,-8.42884,0,-64.593,-8.42884,-64.593	1/1:177:0,176,0:0:0:176,0:6135,0:-388.107,-52.9813,0,-388.107,-52.9813,-388.107	1/1:181:0,179,0:0:0:179,0:6251,0:-399.61,-53.8844,0,-399.61,-53.8844,-399.61	1/2:127:0,58,67:0:0:58,67:2022,2395:-289.018,-177.903,-160.443,-111.151,0,-90.9818	1/1:94:0,94,0:0:0:94,0:3341,0:-210.711,-28.2968,0,-210.711,-28.2968,-210.711	1/2:111:0,71,40:0:0:71,40:2500,1416:-242.423,-106.244,-84.8707,-136.478,0,-124.437	1/1:87:0,87,0:0:0:87,0:3045,0:-192.246,-26.1896,0,-192.246,-26.1896,-192.246	1/2:327:0,184,142:0:0:184,142:6516,5030:-722.978,-371.19,-315.8,-351.749,0,-309.002	1/2:178:0,94,83:0:0:94,83:3301,2963:-399.877,-221.075,-192.779,-178.757,0,-153.772	1/1:34:0,34,0:0:0:34,0:1184,0:-75.1513,-10.235,0,-75.1513,-10.235,-75.1513	1/1:283:0,283,0:0:0:283,0:9959,0:-624.457,-85.1915,0,-624.457,-85.1915,-624.457	1/1:168:0,160,8:0:0:160,8:5616,284:-354.446,-48.1648,0,-332.959,-26.3505,-330.551	1/2:137:1,61,74:1:23:61,74:2151,2627:-311.731,-195.713,-179.117,-114.553,0,-94.0451	1/2:14:0,12,2:0:0:12,2:425,72:-28.6496,-5.75562,-2.14326,-23.216,0,-22.6139	1/1:16:0,16,0:0:0:16,0:556,0:-35.1221,-4.81648,0,-35.1221,-4.81648,-35.1221	1/2:6:0,2,4:0:0:2,4:70,140:-15.0243,-11.0665,-10.4644,-4.23816,0,-3.03404	1/1:3:0,3,0:0:0:3,0:98,0:-6.98408,-0.90309,0,-6.98408,-0.90309,-6.98408	1/1:26:0,26,0:0:0:26,0:897,0:-59.4642,-7.82678,0,-59.4642,-7.82678,-59.4642	1/1:113:0,113,0:0:0:113,0:3945,0:-248.455,-34.0164,0,-248.455,-34.0164,-248.455	1/2:208:0,115,93:0:0:115,93:4047,3331:-473.716,-250.913,-216.294,-223.099,0,-195.103	1/2:33:0,15,18:0:0:15,18:520,626:-76.6888,-47.2859,-42.7704,-29.6871,0,-24.2686	1/1:1:0,1,0:0:0:1,0:34,0:-2.44866,-0.30103,0,-2.44866,-0.30103,-2.44866	1/2:131:0,61,69:0:0:61,69:2143,2453:-301.867,-183.685,-165.322,-118.271,0,-97.4998	1/2:18:0,10,8:0:0:10,8:347,288:-41.1149,-22.0186,-19.0083,-19.3916,0,-16.9833	1/2:149:0,81,68:0:0:81,68:2769,2431:-337.299,-183.597,-159.214,-153.995,0,-133.525	1/2:49:0,25,24:0:0:25,24:868,841:-111.78,-63.7703,-56.2446,-48.2981,0,-41.0733	1/1:40:0,40,0:0:0:40,0:1410,0:-89.348,-12.0412,0,-89.348,-12.0412,-89.348	1/2:113:0,64,49:0:0:64,49:2217,1736:-249.661,-128.68,-109.414,-121.271,0,-106.52	1/2:139:0,79,60:0:0:79,60:2778,2136:-319.686,-162.171,-138.39,-157.814,0,-139.752	1/2:195:0,96,99:0:0:96,99:3323,3489:-444.033,-260.621,-231.722,-183.697,0,-153.895	1/1:103:0,102,1:0:0:102,1:3580,36:-227.539,-30.7051,0,-224.828,-27.6599,-224.527	1/1:165:0,165,0:0:0:165,0:5802,0:-366.231,-49.67,0,-366.231,-49.67,-366.231	1/1:152:0,151,0:0:0:151,0:5293,0:-333.896,-45.4555,0,-333.896,-45.4555,-333.896	1/2:23:0,13,10:0:0:13,10:466,360:-52.3228,-27.4396,-23.5262,-25.1795,0,-22.1692	1/2:111:0,63,48:0:0:63,48:2248,1716:-256.542,-130.715,-111.75,-126.128,0,-111.679	1/2:60:0,34,26:0:0:34,26:1186,924:-133.576,-69.1627,-58.9276,-64.7049,0,-56.8781	1/2:14:0,8,6:0:0:8,6:288,216:-32.7927,-16.8256,-14.4174,-16.2703,0,-14.4641	1/2:122:0,66,55:0:0:66,55:2313,1972:-273.236,-146.993,-127.125,-126.301,0,-109.744	1/2:43:0,21,22:0:0:21,22:742,773:-98.7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chr08	8619445	.	A	G	33806.6	PASS	AB=0.494502;ABP=3.82214;AC=38;AF=0.202128;AN=188;AO=1554;CIGAR=1X;DP=9538;DPB=9538;DPRA=1.07296;EPP=3377.48;EPPR=17301;GTI=3;LEN=1;MEANALT=1.07843;MQM=59.9833;MQMR=59.9947;NS=94;NUMALT=1;ODDS=1.61223;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54380;QR=283406;RO=7978;RPL=743;RPP=9.47162;RPPR=4.05657;RPR=811;RUN=1;SAF=743;SAP=9.47162;SAR=811;SRF=3957;SRP=4.12516;SRR=4021;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1514:0:0:0,-12.9443,-136.552	0/0:116:116,0:116:4142:0:0:0,-34.9195,-372.963	0/1:113:75,38:75:2679:38:1306:-83.8101,0,-207.338	0/0:147:146,0:146:5224:0:0:0,-43.9504,-469.988	0/1:57:26,31:26:923:31:1096:-81.7912,0,-66.2281	0/1:47:28,19:28:1004:19:675:-46.9285,0,-76.5275	0/0:103:103,0:103:3667:0:0:0,-31.0061,-330.232	0/0:120:120,0:120:4245:0:0:0,-36.1236,-382.23	0/0:107:105,1:105:3701:1:36:0,-28.6508,-329.712	0/0:79:78,1:78:2792:1:27:0,-21.0816,-248.821	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.623	0/0:216:216,0:216:7568:0:0:0,-65.0225,-681.169	0/0:186:186,0:186:6596:0:0:0,-55.9916,-593.726	0/0:141:139,2:139:4915:2:57:0,-37.0319,-437.091	0/0:172:171,1:171:6085:1:36:0,-48.1789,-544.156	0/0:117:116,0:116:4110:0:0:0,-34.9195,-369.725	0/0:121:121,0:121:4307:0:0:0,-36.4246,-387.809	0/0:136:136,0:136:4830:0:0:0,-40.9401,-434.855	0/0:83:82,1:82:2919:1:36:0,-21.3872,-259.347	0/0:86:86,0:86:3070:0:0:0,-25.8886,-276.528	0/0:153:152,1:152:5321:1:36:0,-42.4593,-475.433	0/1:31:8,23:8:284:23:803:-63.2564,0,-16.5714	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/1:84:49,34:49:1756:34:1198:-82.7789,0,-132.979	0/0:62:62,0:62:2195:0:0:0,-18.6639,-197.813	0/1:184:115,69:115:4116:69:2441:-164.555,0,-315.235	0/1:180:80,100:80:2876:100:3514:-262.286,0,-204.89	0/0:89:89,0:89:3149:0:0:0,-26.7917,-283.636	0/0:137:136,1:136:4852:1:36:0,-37.6428,-433.235	0/0:83:80,3:80:2851:3:108:0,-14.9103,-246.753	0/1:111:52,59:52:1860:59:2053:-151.623,0,-134.265	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:325:324,1:324:11507:1:26:0,-95.2349,-1032.91	0/1:58:33,25:33:1171:25:882:-62.2368,0,-88.2369	0/1:98:58,40:58:2067:40:1383:-95.2624,0,-156.799	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:102:35,67:35:1239:67:2335:-179.703,0,-81.1086	0/1:93:49,44:49:1739:44:1530:-109.995,0,-128.798	0/1:135:64,71:64:2288:71:2491:-183.803,0,-165.543	0/1:150:77,73:77:2747:73:2559:-185.406,0,-202.318	0/0:139:139,0:139:4803:0:0:0,-41.8432,-432.43	0/1:80:38,42:38:1346:42:1488:-110.132,0,-97.3563	0/1:74:42,32:42:1508:32:1131:-79.8215,0,-113.738	0/1:120:66,54:66:2330:54:1910:-136.053,0,-173.834	0/0:80:80,0:80:2831:0:0:0,-24.0824,-255.03	0/0:112:111,1:111:3968:1:36:0,-30.1171,-353.713	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:75:39,36:39:1396:36:1284:-93.2862,0,-103.362	0/1:60:31,28:31:1112:28:985:-70.8412,0,-82.2708	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:100:45,55:45:1612:55:1932:-144.051,0,-115.267	0/1:38:25,13:25:877:13:459:-30.2049,0,-67.8061	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/0:170:168,2:168:5922:2:68:0,-44.7174,-526.636	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:89:47,42:47:1688:42:1465:-105.349,0,-125.415	0/0:140:140,0:140:4996:0:0:0,-42.1442,-449.787	0/0:60:60,0:60:2119:0:0:0,-18.0618,-190.978	0/0:64:64,0:64:2246:0:0:0,-19.2659,-202.401	0/0:123:123,0:123:4384:0:0:0,-37.0267,-394.733	0/1:105:38,67:38:1355:67:2374:-182.31,0,-90.6416	0/0:91:91,0:91:3238:0:0:0,-27.3937,-291.561	0/0:54:54,0:54:1915:0:0:0,-16.2556,-172.627	0/0:160:160,0:160:5688:0:0:0,-48.1648,-512.041	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:73:33,40:33:1188:40:1402:-104.499,0,-85.2534	0/0:159:159,0:159:5646:0:0:0,-47.8638,-508.262	0/0:101:101,0:101:3602:0:0:0,-30.404,-324.386	0/0:120:120,0:120:4265:0:0:0,-36.1236,-384.027	0/0:108:107,1:107:3795:1:36:0,-28.913,-338.15	0/1:19:13,6:13:464:6:207:-13.2473,0,-36.3779	0/0:129:129,0:129:4601:0:0:0,-38.8329,-414.254	0/1:94:39,55:39:1387:55:1900:-142.976,0,-96.8313	0/0:176:175,1:175:6242:1:36:0,-49.383,-558.279	0/0:168:168,0:168:5976:0:0:0,-50.573,-537.949	0/0:143:143,0:143:5079:0:0:0,-43.0473,-457.256	0/1:181:105,76:105:3726:76:2669:-185.968,0,-281.056	0/0:299:297,1:297:10502:1:36:0,-86.4485,-941.524	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/1:126:69,57:69:2445:57:2021:-144.231,0,-182.374	0/0:140:140,0:140:4957:0:0:0,-42.1442,-446.281	0/1:100:45,55:45:1582:55:1912:-142.252,0,-112.566	0/1:147:66,81:66:2339:81:2766:-204.929,0,-166.518	0/1:149:58,91:58:2072:91:3139:-237.88,0,-141.897	0/0:98:97,1:97:3439:1:36:0,-25.9027,-306.124	0/0:250:250,0:250:8905:0:0:0,-75.2575,-801.438
chr08	8651997	.	A	C	264529	PASS	AB=0.473558;ABP=28.2745;AC=152;AF=0.808511;AN=188;AO=9699;CIGAR=1X;DP=11926;DPB=11926;DPRA=0;EPP=21055.4;EPPR=4828.02;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9549;MQMR=59.9721;NS=94;NUMALT=1;ODDS=8.12486;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341911;QR=78639;RO=2222;RPL=4727;RPP=16.4491;RPPR=75.3119;RPR=4972;RUN=1;SAF=4726;SAP=16.6694;SAR=4973;SRF=975;SRP=75.3119;SRR=1247;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1394:-125.753,-12.0412,0	1/1:158:0,158:0:0:158:5609:-504.931,-47.5627,0	0/1:253:138,115:138:4867:115:3998:-283.851,0,-362.028	1/1:226:0,226:0:0:226:7984:-718.584,-68.0328,0	0/1:66:37,29:37:1299:29:1040:-73.9591,0,-97.3425	0/1:96:67,29:67:2371:29:1040:-65.0155,0,-184.75	1/1:130:0,130:0:0:130:4595:-413.643,-39.1339,0	1/1:203:2,201:2:72:201:7099:-632.139,-54.2724,0	1/1:107:0,107:0:0:107:3728:-335.705,-32.2102,0	1/1:156:0,156:0:0:156:5462:-491.712,-46.9607,0	1/1:173:0,173:0:0:173:6095:-548.65,-52.0782,0	1/1:149:0,149:0:0:149:5260:-473.539,-44.8535,0	1/1:145:0,145:0:0:145:5057:-455.281,-43.6494,0	1/1:185:1,184:1:36:184:6493:-580.864,-52.0923,0	1/1:120:0,120:0:0:120:4267:-384.211,-36.1236,0	1/1:99:0,99:0:0:99:3496:-314.814,-29.802,0	1/1:135:2,133:2:72:133:4687:-415.156,-33.8023,0	1/1:123:0,122:0:0:122:4262:-383.404,-36.7257,0	1/1:97:0,97:0:0:97:3405:-306.665,-29.1999,0	1/1:196:0,196:0:0:196:6926:-623.322,-59.0019,0	1/1:152:1,151:1:36:151:5316:-474.979,-42.1583,0	0/1:65:51,14:51:1812:14:504:-26.1311,0,-143.708	1/1:56:0,56:0:0:56:1952:-175.951,-16.8577,0	0/1:124:65,59:65:2294:59:2097:-151.671,0,-169.389	1/1:91:0,91:0:0:91:3195:-287.775,-27.3937,0	0/1:316:162,154:162:5755:154:5410:-391.908,0,-422.94	0/1:280:138,142:138:4805:142:4968:-362.979,0,-348.323	1/1:73:0,73:0:0:73:2569:-231.458,-21.9752,0	1/1:208:0,208:0:0:208:7297:-656.787,-62.6142,0	1/1:156:12,144:12:432:144:5026:-413.266,-7.73948,0	0/1:141:65,76:65:2270:76:2691:-199.988,0,-162.115	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:287:1,285:1:36:285:10030:-899.054,-82.8561,0	0/1:118:54,63:54:1924:63:2232:-165.562,0,-137.857	0/1:132:59,73:59:2091:73:2574:-192.173,0,-148.724	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:151:78,73:78:2761:73:2586:-187.533,0,-203.276	0/1:85:55,30:55:1948:30:1057:-69.8514,0,-150.009	0/1:129:61,68:61:2176:68:2385:-176.072,0,-157.274	0/1:130:67,63:67:2354:63:2232:-162.01,0,-172.985	1/1:129:0,129:0:0:129:4548:-409.49,-38.8329,0	0/1:94:49,45:49:1728:45:1602:-116.173,0,-127.505	0/1:144:66,78:66:2327:78:2752:-204.571,0,-166.342	0/1:179:101,78:101:3594:78:2737:-192.686,0,-269.783	1/1:136:0,136:0:0:136:4841:-435.355,-40.9401,0	1/1:175:2,173:2:72:173:6077:-540.198,-45.8435,0	1/1:185:0,185:0:0:185:6566:-591.024,-55.6906,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:135:64,71:64:2288:71:2507:-185.197,0,-165.543	0/1:47:23,24:23:820:24:847:-62.4003,0,-59.9741	0/1:17:9,8:9:307:8:284:-20.7858,0,-22.5209	0/1:137:65,72:65:2301:72:2531:-186.797,0,-166.109	0/1:58:22,36:22:776:36:1247:-95.0686,0,-52.7024	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	1/1:72:0,72:0:0:72:2532:-228.124,-21.6742,0	1/1:205:1,204:1:36:204:7162:-640.956,-58.1129,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:153:66,87:66:2351:87:3084:-231.73,0,-165.791	1/1:204:2,202:2:72:202:7135:-635.376,-54.5734,0	1/1:92:0,92:0:0:92:3257:-293.347,-27.6948,0	1/1:92:0,92:0:0:92:3270:-294.52,-27.6948,0	1/1:169:4,165:4:144:165:5802:-508.984,-37.5605,0	0/1:116:82,34:82:2928:34:1200:-73.3834,0,-228.836	1/1:80:2,78:2:72:78:2755:-241.354,-17.2457,0	1/1:141:0,141:0:0:141:4983:-448.618,-42.4452,0	1/1:190:0,190:0:0:190:6733:-606.047,-57.1957,0	1/1:28:0,28:0:0:28:986:-89.0522,-8.42884,0	1/1:105:0,105:0:0:105:3687:-332.032,-31.6082,0	0/1:82:28,54:28:992:54:1922:-148.57,0,-64.9099	1/1:271:0,270:0:0:270:9553:-859.352,-81.2781,0	1/1:222:0,222:0:0:222:7803:-702.306,-66.8287,0	1/1:141:1,140:1:36:140:4952:-442.202,-38.847,0	1/1:187:0,187:0:0:187:6613:-595.253,-56.2926,0	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	1/1:171:2,169:2:68:169:5999:-533.56,-45.0184,0	0/1:120:66,54:66:2325:54:1898:-134.971,0,-173.386	1/1:188:0,188:0:0:188:6672:-600.56,-56.5936,0	1/1:180:0,180:0:0:180:6281:-565.391,-54.1854,0	1/1:143:1,142:1:36:142:5020:-448.347,-39.449,0	0/1:168:84,84:84:2981:84:2961:-216.149,0,-217.949	1/1:220:0,220:0:0:220:7707:-693.587,-66.2266,0	1/1:80:0,80:0:0:80:2820:-254.039,-24.0824,0	0/1:115:67,48:67:2375:48:1677:-116.587,0,-179.39	1/1:154:0,154:0:0:154:5460:-491.533,-46.3586,0	0/1:134:72,62:72:2559:62:2192:-157.206,0,-190.222	0/1:162:78,83:78:2783:83:2951:-216.998,0,-201.885	0/1:161:122,39:122:4285:39:1368:-74.9497,0,-337.366	1/1:98:0,98:0:0:98:3475:-312.961,-29.5009,0	1/1:196:0,196:0:0:196:6872:-618.559,-59.0019,0
chr08	8656852	.	C	T	129317	PASS	AB=0.501557;ABP=3.07114;AC=151;AF=0.803191;AN=188;AO=6000;CIGAR=1X;DP=7478;DPB=7478;DPRA=16.071;EPP=12971.1;EPPR=3188.57;GTI=1;LEN=1;MEANALT=1.07527;MQM=59.9953;MQMR=59.9946;NS=94;NUMALT=1;ODDS=2.48393;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214190;QR=51841;RO=1471;RPL=5992;RPP=12962.5;RPPR=3188.57;RPR=8;RUN=1;SAF=5999;SAP=13023.2;SAR=1;SRF=1471;SRP=3197.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:51:0,51:0:0:51:1823:-164.35,-15.3525,0	0/1:124:69,54:69:2423:54:1920:-135.689,0,-180.938	1/1:200:0,200:0:0:200:7112:-640.053,-60.206,0	0/1:55:30,25:30:1071:25:900:-64.7644,0,-80.145	0/1:30:15,15:15:527:15:536:-39.5357,0,-38.7293	1/1:84:0,84:0:0:84:2990:-269.332,-25.2865,0	1/1:97:0,97:0:0:97:3444:-310.172,-29.1999,0	1/1:106:0,106:0:0:106:3777:-340.127,-31.9092,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:91:0,91:0:0:91:3263:-293.889,-27.3937,0	1/1:80:0,80:0:0:80:2855:-257.188,-24.0824,0	1/1:39:0,39:0:0:39:1372:-123.776,-11.7402,0	1/1:75:0,75:0:0:75:2663:-239.914,-22.5773,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:188:1,187:1:36:187:6674:-597.14,-52.9954,0	1/1:150:2,148:2:72:148:5301:-470.386,-38.3178,0	0/1:100:58,42:58:2014:42:1503:-105.461,0,-151.427	1/1:79:0,79:0:0:79:2829:-254.847,-23.7814,0	0/1:63:14,49:14:496:49:1756:-139.359,0,-26.0094	1/1:73:1,72:1:36:72:2556:-226.69,-18.3769,0	0/1:182:94,88:94:3343:88:3164:-230.196,0,-246.301	0/1:230:123,107:123:4340:107:3791:-272.151,0,-321.543	1/1:41:1,40:1:27:40:1412:-124.675,-9.64245,0	1/1:224:0,224:0:0:224:7993:-719.391,-67.4307,0	1/1:137:6,131:6:216:131:4684:-401.928,-21.4506,0	0/1:64:30,34:30:1057:34:1215:-90.3898,0,-76.173	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:185:0,185:0:0:185:6597:-593.81,-55.6906,0	0/1:135:59,75:59:2090:75:2683:-201.056,0,-147.71	0/1:52:26,26:26:908:26:932:-68.5453,0,-66.3789	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:113:40,73:40:1367:73:2612:-201.311,0,-89.3067	0/1:28:12,16:12:432:16:561:-42.3893,0,-30.7924	0/1:144:63,81:63:2244:81:2874:-215.547,0,-158.875	0/1:40:21,19:21:733:19:684:-49.8491,0,-54.2485	1/1:62:0,62:0:0:62:2182:-196.643,-18.6639,0	0/1:131:73,57:73:2564:57:2039:-144.288,0,-191.516	0/1:101:50,50:50:1755:50:1779:-129.929,0,-127.768	0/1:155:71,84:71:2516:84:2970:-220.873,0,-180.034	1/1:121:2,119:2:72:119:4272:-377.82,-29.5879,0	1/1:77:0,76:0:0:76:2736:-246.122,-22.8783,0	1/1:97:0,96:0:0:96:3389:-305.014,-28.8989,0	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:130:48,82:48:1698:82:2938:-225.52,0,-113.971	0/1:38:21,17:21:744:17:612:-43.9743,0,-55.8452	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:95:58,37:58:2046:37:1328:-91.2244,0,-155.813	0/1:51:23,28:23:795:28:1004:-75.3233,0,-56.5115	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:5,3:5:176:3:104:-7.29457,0,-13.7768	1/1:93:4,89:4:140:89:3187:-274.108,-15.0512,0	1/1:87:1,86:1:36:86:3080:-273.83,-22.5913,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:155:72,83:72:2558:83:2979:-221.682,0,-183.81	1/1:140:0,140:0:0:140:5028:-452.664,-42.1442,0	1/1:37:0,37:0:0:37:1323:-119.371,-11.1381,0	1/1:72:1,71:1:21:71:2535:-226.3,-19.5742,0	1/1:144:2,142:2:72:142:5092:-451.594,-36.5202,0	0/1:173:112,61:112:3942:61:2191:-145.377,0,-302.896	1/1:30:1,29:1:36:29:1027:-89.1439,-5.43263,0	1/1:67:1,66:1:36:66:2340:-207.259,-16.5707,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:117:0,117:0:0:117:4174:-375.842,-35.2205,0	0/1:91:47,44:47:1671:44:1584:-115.458,0,-123.283	1/1:103:0,103:0:0:103:3631:-326.994,-31.0061,0	1/1:156:0,156:0:0:156:5598:-503.94,-46.9607,0	1/1:77:0,77:0:0:77:2767:-249.271,-23.1793,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:16:10,6:10:356:6:204:-13.8755,0,-27.5648	1/1:81:0,81:0:0:81:2906:-261.775,-24.3834,0	0/1:104:49,54:49:1743:54:1929:-142.52,0,-125.788	1/1:149:1,148:1:36:148:5284:-472.096,-41.2552,0	1/1:48:0,48:0:0:48:1713:-154.455,-14.4494,0	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0	0/1:50:29,21:29:1028:21:748:-52.5938,0,-77.7815	1/1:139:4,135:4:140:135:4770:-416.511,-28.8986,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:69:35,34:35:1190:34:1212:-88.6153,0,-86.6241	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	0/1:26:14,12:14:500:12:423:-30.5783,0,-37.5094	0/1:69:31,38:31:1079:38:1351:-101.119,0,-76.6466	0/1:42:24,18:24:847:18:640:-45.2861,0,-63.9055	1/1:103:1,102:1:36:102:3623:-322.676,-27.4078,0	1/1:88:1,87:1:36:87:3124:-277.787,-22.8924,0
chr08	8663976	.	G	A	89043.3	PASS	AB=0.461423;ABP=28.8112;AC=151;AF=0.803191;AN=188;AO=4125;CIGAR=1X;DP=5216;DPB=5216;DPRA=11.2065;EPP=8942.97;EPPR=2372.09;GTI=1;LEN=1;MEANALT=1;MQM=59.9879;MQMR=59.9743;NS=94;NUMALT=1;ODDS=1.69071;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=147529;QR=38911;RO=1091;RPL=2;RPP=8942.97;RPPR=2372.09;RPR=4123;RUN=1;SAF=4125;SAP=8960.33;SAR=0;SRF=1091;SRP=2372.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:2,22:2:72:22:792:-64.7689,-0.387998,0	1/1:36:0,36:0:0:36:1273:-114.871,-10.8371,0	0/1:95:44,51:44:1550:51:1828:-136.203,0,-111.19	1/1:148:0,148:0:0:148:5259:-473.442,-44.5524,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:29:17,12:17:608:12:432:-30.4913,0,-46.3222	1/1:53:0,53:0:0:53:1889:-170.283,-15.9546,0	1/1:56:0,56:0:0:56:1990:-179.365,-16.8577,0	1/1:63:0,63:0:0:63:2249:-202.671,-18.9649,0	1/1:56:0,56:0:0:56:1986:-179.011,-16.8577,0	1/1:32:1,31:1:36:31:1116:-97.1534,-6.03469,0	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:46:1,45:1:36:45:1601:-140.78,-10.2491,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:49:2,47:2:72:47:1673:-144.019,-7.91375,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:19:1,18:1:36:18:644:-54.6923,-2.1213,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	1/1:102:0,102:0:0:102:3626:-326.544,-30.7051,0	0/1:63:48,15:48:1713:15:540:-29.9716,0,-135.47	1/1:60:0,60:0:0:60:2130:-191.965,-18.0618,0	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	1/1:57:0,57:0:0:57:2025:-182.521,-17.1587,0	0/1:161:78,83:78:2770:83:2952:-217.446,0,-201.073	0/1:135:71,64:71:2556:64:2289:-165.631,0,-189.651	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:198:0,198:0:0:198:7085:-637.708,-59.6039,0	1/1:79:4,75:4:135:75:2651:-226.352,-11.2989,0	0/1:73:34,39:34:1194:39:1404:-104.684,0,-85.786	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:8:0,8:0:0:8:277:-25.2651,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:117:0,117:0:0:117:4204:-378.539,-35.2205,0	0/1:69:40,29:40:1436:29:1036:-72.7828,0,-108.767	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:104:58,46:58:2080:46:1646:-117.121,0,-156.163	0/1:16:3,13:3:108:13:468:-37.6432,0,-5.25869	0/1:98:50,48:50:1796:48:1710:-124.683,0,-132.421	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:52:33,19:33:1184:19:684:-46.2368,0,-91.2148	0/1:46:25,21:25:896:21:752:-54.1589,0,-67.113	0/1:96:41,55:41:1461:55:1957:-147.504,0,-102.885	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:52:0,52:0:0:52:1856:-167.319,-15.6536,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:76:44,32:44:1554:32:1136:-79.6683,0,-117.269	0/1:51:33,18:33:1184:18:648:-43.2994,0,-91.5158	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:85:46,39:46:1626:39:1404:-101.072,0,-121.037	0/1:41:25,16:25:892:16:572:-39.4712,0,-68.2575	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	1/1:91:0,91:0:0:91:3255:-293.17,-27.3937,0	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	0/1:128:65,63:65:2305:63:2260:-165.131,0,-169.178	1/1:91:0,91:0:0:91:3253:-292.989,-27.3937,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:80:0,80:0:0:80:2838:-255.653,-24.0824,0	0/1:85:66,19:66:2357:19:684:-36.3028,0,-186.799	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:34:0,34:0:0:34:1215:-109.656,-10.235,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:95:0,95:0:0:95:3389:-305.224,-28.5979,0	0/1:36:24,12:24:864:12:428:-28.0217,0,-67.2455	1/1:115:0,115:0:0:115:4136:-372.422,-34.6185,0	1/1:140:0,140:0:0:140:5025:-452.393,-42.1442,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:40:0,40:0:0:40:1417:-127.825,-12.0412,0	0/1:19:12,7:12:417:7:252:-17.3094,0,-32.1406	1/1:66:0,66:0:0:66:2361:-212.747,-19.868,0	0/1:72:37,35:37:1309:35:1260:-92.0313,0,-96.4345	1/1:108:0,108:0:0:108:3843:-346.062,-32.5112,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:42:18,24:18:648:24:864:-65.4393,0,-46.0086	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:54:21,33:21:737:33:1188:-90.973,0,-50.395	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:36:11,25:11:396:25:900:-70.4758,0,-25.1457	0/1:98:60,38:60:2151:38:1360:-93.1997,0,-164.356	0/1:37:26,11:26:932:11:396:-24.8446,0,-73.0608	1/1:69:0,69:0:0:69:2476:-223.091,-20.7711,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0
chr08	8664017	.	G	T	17996.3	PASS	AB=0.538383;ABP=28.1815;AC=37;AF=0.196809;AN=188;AO=1073;CIGAR=1X;DP=5092;DPB=5092;DPRA=1.01588;EPP=2333;EPPR=8725.81;GTI=1;LEN=1;MEANALT=1.02381;MQM=59.9981;MQMR=59.992;NS=94;NUMALT=1;ODDS=1.41622;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38129;QR=143002;RO=4017;RPL=1073;RPP=2333;RPPR=8725.81;RPR=0;RUN=1;SAF=1073;SAP=2333;SAR=0;SRF=4017;SRP=8725.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:23,1:23:820:1:36:0,-3.62644,-70.5242	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/1:92:51,41:51:1820:41:1443:-102.468,0,-136.386	0/0:145:145,0:145:5126:0:0:0,-43.6493,-461.483	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:28:11,17:11:377:17:608:-46.6232,0,-25.8291	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.073	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.045	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.861	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.835	0/0:46:45,1:45:1599:1:36:0,-10.2491,-140.601	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:41:41,0:41:1437:0:0:0,-12.3422,-129.624	0/0:47:47,0:47:1667:0:0:0,-14.1484,-150.317	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:19:18,1:18:648:1:36:0,-2.12129,-55.0536	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:90:90,0:90:3192:0:0:0,-27.0927,-287.503	0/0:99:99,0:99:3539:0:0:0,-29.802,-318.719	0/1:61:14,47:14:500:47:1679:-133.034,0,-26.9733	0/0:59:59,0:59:2096:0:0:0,-17.7608,-188.91	0/1:22:14,8:14:500:8:288:-19.6447,0,-38.7135	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:159:82,77:82:2926:77:2743:-199.249,0,-215.71	0/1:135:63,72:63:2235:72:2545:-188.661,0,-160.775	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:192:192,0:192:6836:0:0:0,-57.7978,-615.313	0/0:76:72,4:72:2575:4:140:0,-9.9337,-219.054	0/1:73:39,34:39:1404:34:1211:-87.3203,0,-104.684	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:114:114,0:114:4076:0:0:0,-34.3174,-367.024	0/1:69:29,40:29:1022:40:1436:-108.767,0,-71.5198	0/1:22:13,9:13:464:9:315:-22.0646,0,-35.4748	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:102:45,57:45:1568:57:2044:-153.527,0,-110.703	0/1:16:13,3:13:456:3:104:-4.88633,0,-36.5568	0/1:96:46,50:46:1643:50:1771:-130.774,0,-119.259	0/1:20:10,10:10:356:10:356:-26.3606,0,-26.3606	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:52:18,34:18:644:34:1204:-93.0111,0,-42.637	0/1:47:21,26:21:752:26:924:-69.3292,0,-53.8578	0/1:90:52,38:52:1846:38:1338:-93.6258,0,-139.326	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:73:30,43:30:1076:43:1528:-115.838,0,-75.1777	0/1:51:18,33:18:648:33:1184:-91.5158,0,-43.2994	0/1:9:7,2:7:248:2:68:-3.74844,0,-19.9549	0/1:85:38,47:38:1352:47:1653:-123.468,0,-96.3928	0/1:39:17,22:17:612:22:788:-59.5046,0,-43.6733	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/0:74:74,0:74:2642:0:0:0,-22.2762,-238.026	0/0:89:89,0:89:3167:0:0:0,-26.7917,-285.255	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/1:125:60,65:60:2132:65:2295:-169.182,0,-154.52	0/0:88:88,0:88:3132:0:0:0,-26.4906,-282.108	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/0:81:81,0:81:2867:0:0:0,-24.3834,-258.266	0/1:86:21,65:21:744:65:2290:-180.47,0,-41.3957	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/0:33:33,0:33:1153:0:0:0,-9.93399,-104.074	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:92:91,1:91:3215:1:36:0,-24.0965,-285.974	0/1:36:12,24:12:419:24:860:-66.8848,0,-27.2056	0/0:112:112,0:112:3970:0:0:0,-33.7154,-357.493	0/0:136:136,0:136:4840:0:0:0,-40.9401,-435.755	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:19:7,12:7:248:12:432:-33.5016,0,-16.9446	0/0:66:65,1:65:2328:1:36:0,-16.2697,-206.182	0/1:69:33,36:33:1175:36:1286:-95.272,0,-85.2859	0/0:103:103,0:103:3674:0:0:0,-31.0061,-330.863	0/0:64:64,0:64:2260:0:0:0,-19.2659,-203.661	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:44:25,19:25:888:19:661:-46.5663,0,-66.9937	0/0:83:83,0:83:2975:0:0:0,-24.9855,-267.982	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:52:31,21:31:1098:21:741:-51.3589,0,-83.4751	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:36:25,11:25:896:11:396:-25.1457,0,-70.1151	0/1:99:40,58:40:1423:58:2078:-157.429,0,-98.506	0/1:36:11,25:11:396:25:896:-70.1233,0,-25.1457	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.937	0/0:54:53,0:53:1895:0:0:0,-15.9546,-170.468
chr08	8669486	.	TCG	CCT,TCT	253902	PASS	AB=0.477187,0.519726;ABP=16.1874,12.862;AC=150,36;AF=0.806452,0.193548;AN=186;AO=7751,1543;CIGAR=1X1M1X,2M1X;DP=9337;DPB=9339.33;DPRA=0,0.912166;EPP=16600.4,3327.59;EPPR=3.0103;GTI=1;LEN=3,1;MEANALT=1.83871,2.31111;MQM=59.7914,59.9825;MQMR=60;NS=93;NUMALT=2;ODDS=1.15394;PAIRED=0,0;PAIREDR=0;PAO=6,1;PQA=136,36;PQR=0;PRO=0;QA=268687,54967;QR=72;RO=2;RPL=4160,839;RPP=93.7132,28.6584;RPPR=7.35324;RPR=3591,704;RUN=1,1;SAF=4187,842;SAP=111.746,30.9889;SAR=3564,701;SRF=1;SRP=3.0103;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33,0:0:0:33,0:1127,0:-101.729,-9.93399,0,-101.729,-9.93399,-101.729	1/1:97:0,97,0:0:0:97,0:3356,0:-302.084,-29.1999,0,-302.084,-29.1999,-302.084	1/2:117:0,59,57:0:0:59,57:2037,2032:-331.259,-165.771,-148.011,-165.615,0,-148.457	1/1:255:0,252,0:0:0:252,0:8742,0:-786.485,-75.8596,0,-786.485,-75.8596,-786.485	1/2:6:0,4,2:0:0:4,2:136,72:-17.2523,-6.23466,-5.03054,-11.3708,0,-10.7688	1/2:4:0,2,2:0:0:2,2:54,72:-10.4466,-6.23466,-5.6326,-4.52686,0,-3.9248	1/1:99:0,99,0:0:0:99,0:3454,0:-311.073,-29.802,0,-311.073,-29.802,-311.073	1/1:107:0,107,0:0:0:107,0:3658,0:-329.237,-32.2102,0,-329.237,-32.2102,-329.237	1/1:92:0,92,0:0:0:92,0:3203,0:-288.488,-27.6948,0,-288.488,-27.6948,-288.488	1/1:146:0,145,0:0:0:145,0:5003,0:-450.063,-43.6494,0,-450.063,-43.6494,-450.063	1/1:141:0,141,0:0:0:141,0:4896,0:-440.783,-42.4452,0,-440.783,-42.4452,-440.783	1/1:209:0,209,0:0:0:209,0:7192,0:-647.06,-62.9153,0,-647.06,-62.9153,-647.06	1/1:153:0,152,0:0:0:152,0:5298,0:-476.53,-45.7566,0,-476.53,-45.7566,-476.53	1/1:141:0,138,0:0:0:138,0:4818,0:-433.487,-41.5421,0,-433.487,-41.5421,-433.487	1/1:138:0,138,0:0:0:138,0:4779,0:-430.277,-41.5421,0,-430.277,-41.5421,-430.277	1/1:127:0,126,0:0:0:126,0:4343,0:-390.801,-37.9298,0,-390.801,-37.9298,-390.801	1/1:89:0,89,0:0:0:89,0:3072,0:-276.698,-26.7917,0,-276.698,-26.7917,-276.698	1/1:64:0,64,0:0:0:64,0:2184,0:-196.818,-19.2659,0,-196.818,-19.2659,-196.818	1/1:78:0,78,0:0:0:78,0:2698,0:-243.065,-23.4803,0,-243.065,-23.4803,-243.065	1/1:149:0,148,0:0:0:148,0:5162,0:-464.349,-44.5524,0,-464.349,-44.5524,-464.349	1/1:142:0,140,0:0:0:140,0:4808,0:-432.579,-42.1442,0,-432.579,-42.1442,-432.579	2/2:12:0,1,10:0:0:1,10:36,360:-32.3845,-29.4471,-29.146,-3.0103,-0.0728826,0	1/1:84:0,84,0:0:0:84,0:2944,0:-265.157,-25.2865,0,-265.157,-25.2865,-265.157	1/2:66:0,46,19:0:0:46,19:1625,684:-188.145,-55.8109,-41.9636,-132.333,0,-126.613	1/1:12:0,11,1:0:0:11,1:389,36:-34.978,-3.31133,0,-32.0401,-0.0140851,-31.739	1/2:178:0,87,91:0:0:87,91:3052,3222:-511.07,-262.807,-236.618,-248.615,0,-221.221	1/2:175:0,75,97:0:0:75,97:2624,3463:-495.786,-282.323,-259.745,-213.457,0,-184.257	1/1:75:0,74,0:0:0:74,0:2592,0:-233.257,-22.2762,0,-233.257,-22.2762,-233.257	1/1:272:0,270,1:0:0:270,1:9379,36:-843.47,-81.2781,0,-840.532,-78.3257,-840.231	1/1:124:0,121,2:0:0:121,2:4199,72:-377.615,-36.4246,0,-371.74,-30.5498,-371.138	1/2:106:0,53,53:0:0:53,53:1882,1896:-308.31,-154.963,-139.009,-153.703,0,-137.748	1/2:8:0,4,4:0:0:4,4:141,135:-22.7663,-11.2784,-10.0743,-11.8328,0,-10.6287	1/1:12:0,12,0:0:0:12,0:426,0:-38.6777,-3.61236,0,-38.6777,-3.61236,-38.6777	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:10:0,10,0:0:0:10,0:350,0:-31.8328,-3.0103,0,-31.8328,-3.0103,-31.8328	1/1:18:0,18,0:0:0:18,0:635,0:-57.42,-5.41854,0,-57.42,-5.41854,-57.42	1/1:301:0,294,0:0:0:294,0:10207,0:-918.234,-88.5028,0,-918.234,-88.5028,-918.234	1/2:47:0,22,25:0:0:22,25:757,892:-134.548,-73.0739,-66.4513,-61.8238,0,-54.298	1/2:91:0,46,45:0:0:46,45:1556,1608:-257.589,-131.464,-117.616,-126.473,0,-112.926	.:.:.:.:.:.:.:.	1/2:115:0,53,61:0:0:53,61:1840,2163:-325.782,-176.212,-160.257,-149.562,0,-131.199	1/2:50:0,21,29:0:0:21,29:737,1021:-143.448,-83.4704,-77.1488,-60.3292,0,-51.5994	1/2:38:0,23,15:0:0:23,15:784,536:-107.656,-44.0594,-37.1357,-63.9469,0,-59.4315	1/2:117:0,50,67:0:0:50,67:1719,2403:-335.627,-196.036,-180.985,-139.62,0,-119.451	1/1:99:1,98,0:1:36:98,0:3394,0:-302.079,-26.2037,0,-302.38,-29.5009,-305.318	1/2:52:0,24,28:0:0:24,28:817,1000:-148.154,-81.8865,-74.6618,-66.6159,0,-58.1871	1/2:47:0,28,19:0:0:28,19:946,684:-132.834,-56.1708,-47.7419,-77.0138,0,-71.2942	1/2:131:0,70,61:0:0:70,61:2416,2184:-374.696,-178.463,-157.391,-196.585,0,-178.222	1/1:103:0,103,0:0:0:103,0:3538,0:-318.63,-31.0061,0,-318.63,-31.0061,-318.63	1/1:124:0,124,0:0:0:124,0:4346,0:-391.304,-37.3277,0,-391.304,-37.3277,-391.304	1/1:53:0,53,0:0:0:53,0:1834,0:-165.335,-15.9546,0,-165.335,-15.9546,-165.335	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:48:0,21,26:0:0:21,26:720,927:-134.007,-75.5609,-69.2393,-58.4362,0,-50.6094	1/2:50:0,17,33:0:0:17,33:591,1158:-142.637,-94.5885,-89.471,-48.3974,0,-38.4634	1/2:20:0,11,9:0:0:11,9:386,324:-58.2051,-26.7966,-23.4853,-31.7642,0,-29.055	1/2:144:0,60,83:0:0:60,83:2034,2934:-403.81,-239.059,-220.997,-164.843,0,-139.858	1/2:25:0,17,8:0:0:17,8:591,288:-71.8997,-23.8592,-18.7417,-48.3964,0,-45.9881	1/1:19:0,19,0:0:0:19,0:676,0:-61.1638,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chr08	8669729	.	C	G	19161	PASS	AB=0.613805;ABP=200.215;AC=36;AF=0.197802;AN=182;AO=1083;CIGAR=1X;DP=4598;DPB=4598;DPRA=1.04459;EPP=2354.71;EPPR=7624.88;GTI=3;LEN=1;MEANALT=1.05263;MQM=59.9963;MQMR=59.9789;NS=91;NUMALT=1;ODDS=0.0144838;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38747;QR=125273;RO=3510;RPL=1083;RPP=2354.71;RPPR=7624.88;RPR=0;RUN=1;SAF=0;SAP=2354.71;SAR=1083;SRF=0;SRP=7624.88;SRR=3510;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:64:20,44:20:716:44:1576:-122.866,0,-45.5018	0/0:130:130,0:130:4619:0:0:0,-39.1339,-415.872	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:9:2,6:2:72:6:216:-17.0224,0,-4.06865	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:66:66,0:66:2330:0:0:0,-19.868,-209.957	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:83:83,0:83:2939:0:0:0,-24.9855,-264.741	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:128:128,0:128:4577:0:0:0,-38.5318,-412.094	0/1:29:8,21:8:288:21:752:-59.2764,0,-17.5375	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/1:12:6,6:6:201:6:216:-16.1782,0,-14.8047	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:133:61,72:61:2172:72:2580:-192.412,0,-155.71	0/1:135:43,92:43:1529:92:3277:-254.511,0,-97.262	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.9615	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.762	0/0:65:65,0:65:2306:0:0:0,-19.5669,-207.798	0/1:68:24,44:24:856:44:1580:-122.022,0,-56.8911	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:146:146,0:146:5228:0:0:0,-43.9504,-470.658	0/1:59:16,43:16:572:43:1548:-121.852,0,-34.0527	0/1:57:21,36:21:756:36:1292:-99.4251,0,-51.2085	.:.:.:.:.:.:.:.	0/1:63:32,31:32:1148:31:1104:-80.7057,0,-84.6649	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/1:26:9,17:9:320:17:600:-46.5024,0,-21.3156	0/1:68:26,42:26:902:42:1496:-114.465,0,-61.0203	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:51:12,39:12:432:39:1396:-110.587,0,-23.8687	0/1:46:13,33:13:468:33:1188:-93.3812,0,-28.6123	0/1:72:35,37:35:1256:37:1332:-98.5082,0,-91.6711	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.383	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:41:7,34:7:252:34:1220:-97.7646,0,-10.0508	0/1:29:14,15:14:504:15:527:-39.0303,0,-36.9682	0/1:11:2,9:2:72:9:316:-25.4675,0,-3.52539	0/1:84:29,55:29:1044:55:1965:-151.837,0,-68.9883	0/1:27:4,23:4:144:23:816:-65.6339,0,-5.18581	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:63:63,0:63:2215:0:0:0,-18.9649,-199.61	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:144:85,59:85:3040:59:2120:-147.72,0,-230.482	0/0:78:76,2:76:2705:2:72:0,-16.6436,-236.856	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:65:64,0:64:2258:0:0:0,-19.2659,-203.12	0/1:98:15,83:15:540:83:2988:-239.648,0,-19.4356	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:72:35,37:35:1252:37:1320:-97.4278,0,-91.3109	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:45:44,1:44:1584:1:36:0,-9.94807,-139.253	0/1:47:23,24:23:828:24:856:-63.2127,0,-60.6957	0/0:90:86,1:86:3062:1:36:0,-22.9512,-272.208	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/1:38:24,14:24:851:14:504:-34.259,0,-65.4703	0/0:100:100,0:100:3552:0:0:0,-30.103,-319.801	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:59:32,27:32:1140:27:963:-69.2252,0,-85.1484	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/1:76:28,48:28:1000:48:1699:-130.317,0,-67.4371	0/1:70:18,52:18:629:52:1864:-146.967,0,-35.8617	0/0:122:122,0:122:4368:0:0:0,-36.7257,-393.283	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428
chr08	8669735	.	T	A	76585.2	PASS	AB=0.383247;ABP=209.38;AC=146;AF=0.802198;AN=182;AO=3506;CIGAR=1X;DP=4604;DPB=4604;DPRA=17.0407;EPP=7616.19;EPPR=2387.29;GTI=3;LEN=1;MEANALT=1;MQM=59.9703;MQMR=59.9964;NS=91;NUMALT=1;ODDS=0.0145761;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125392;QR=39279;RO=1098;RPL=3474;RPP=7340.78;RPPR=2361.3;RPR=32;RUN=1;SAF=32;SAP=7340.78;SAR=3474;SRF=3;SRP=2361.3;SRR=1095;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:64:44,20:44:1580:20:720:-45.8629,0,-123.226	1/1:128:0,128:0:0:128:4568:-411.287,-38.5318,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:28:1,27:1:36:27:964:-83.4785,-4.83057,0	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	1/1:41:2,39:2:72:39:1388:-118.382,-5.50551,0	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:31:0,31:0:0:31:1116:-100.716,-9.33193,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:123:0,123:0:0:123:4388:-393.733,-37.0267,0	0/1:28:20,8:20:720:8:288:-17.8386,0,-56.6999	1/1:29:0,29:0:0:29:1024:-92.4726,-8.72987,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:133:71,62:71:2548:62:2232:-161.107,0,-189.533	0/1:133:91,42:91:3245:42:1508:-95.9776,0,-252.233	1/1:28:0,28:0:0:28:994:-89.7729,-8.42884,0	1/1:100:0,100:0:0:100:3550:-319.707,-30.103,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:67:44,23:44:1553:23:816:-53.5927,0,-119.891	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:150:2,148:2:72:148:5288:-469.217,-38.3178,0	0/1:59:43,16:43:1548:16:572:-34.0527,0,-121.852	0/1:57:36,21:36:1292:21:756:-51.2085,0,-99.4251	.:.:.:.:.:.:.:.	0/1:63:31,32:31:1112:32:1144:-84.3046,0,-81.4265	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:26:18,8:18:648:8:273:-17.0734,0,-50.8251	0/1:69:43,26:43:1540:26:932:-63.4278,0,-118.122	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	0/1:51:39,12:39:1404:12:428:-23.5063,0,-111.307	0/1:46:33,13:33:1172:13:468:-28.6123,0,-91.9401	0/1:72:38,34:38:1334:34:1216:-88.0724,0,-98.6817	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:40:34,6:34:1220:6:216:-7.74931,0,-98.0656	0/1:31:16,15:16:576:15:521:-37.8844,0,-42.8431	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:84:54,30:54:1944:30:1076:-71.8663,0,-149.949	0/1:27:23,4:23:828:4:144:-5.18581,0,-66.7163	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:66:2,64:2:72:64:2279:-198.534,-13.0313,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:141:57,84:57:2048:84:2982:-226.165,0,-142.146	1/1:79:2,77:2:72:77:2741:-240.095,-16.9446,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:58:0,58:0:0:58:2057:-185.4,-17.4597,0	0/1:97:82,15:82:2929:15:540:-19.7366,0,-234.641	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:40:2,38:2:72:38:1356:-115.497,-5.20448,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:73:1,72:1:36:72:2576:-228.491,-18.3769,0	0/1:73:37,36:37:1320:36:1288:-94.2484,0,-97.1268	1/1:87:0,87:0:0:87:3104:-279.588,-26.1896,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:44:0,44:0:0:44:1580:-142.491,-13.2453,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:46:1,45:1:36:45:1601:-140.78,-10.2491,0	0/1:47:24,23:24:856:23:828:-60.6957,0,-63.2127	1/1:87:0,87:0:0:87:3100:-279.229,-26.1896,0	1/1:61:0,61:0:0:61:2188:-197.184,-18.3628,0	1/1:53:1,52:1:36:52:1864:-164.441,-12.3563,0	0/1:36:14,22:14:504:22:792:-60.7686,0,-34.861	1/1:103:3,100:3:108:100:3592:-313.41,-20.9309,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:61:28,33:28:1008:33:1175:-87.6941,0,-72.6735	1/1:57:3,54:3:104:54:1940:-165.173,-7.4559,0	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:81:52,29:52:1841:29:1036:-69.1705,0,-141.585	0/1:64:49,15:49:1745:15:528:-28.5854,0,-138.066	1/1:121:0,121:0:0:121:4340:-390.764,-36.4246,0	1/1:89:0,89:0:0:89:3196:-287.848,-26.7917,0
chr08	8838314	.	G	T	242455	PASS	AB=0.642475;ABP=860.615;AC=150;AF=0.806452;AN=186;AO=11658;CIGAR=1X;DP=13420;DPB=13420;DPRA=48.6123;EPP=25101.4;EPPR=152.163;GTI=4;LEN=1;MEANALT=1.08696;MQM=40.6698;MQMR=40.6144;NS=93;NUMALT=1;ODDS=5.45365;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=415881;QR=62282;RO=1753;RPL=11581;RPP=24653.6;RPPR=152.163;RPR=77;RUN=1;SAF=11606;SAP=24868.4;SAR=52;SRF=1753;SRP=3809.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1635:-139.338,-13.8474,0	1/1:128:0,128:0:0:128:4588:-389.172,-38.5318,0	0/1:150:49,101:49:1728:101:3593:-259.127,0,-100.532	1/1:334:0,334:0:0:334:11931:-1040.76,-100.544,0	0/1:112:36,76:36:1261:76:2693:-197.871,0,-75.3193	0/1:107:40,66:40:1424:66:2356:-167.978,0,-88.8363	1/1:182:0,182:0:0:182:6495:-569.028,-54.7875,0	1/1:155:0,155:0:0:155:5531:-469.225,-46.6597,0	1/1:110:0,110:0:0:110:3899:-330.027,-33.1133,0	1/1:202:0,202:0:0:202:7239:-633.549,-60.8081,0	1/1:125:0,125:0:0:125:4471:-386.926,-37.6288,0	1/1:138:0,138:0:0:138:4879:-412.599,-41.5421,0	1/1:132:0,132:0:0:132:4722:-397.751,-39.736,0	1/1:174:0,174:0:0:174:6199:-532.355,-52.3792,0	1/1:111:0,111:0:0:111:3988:-347.393,-33.4143,0	1/1:112:1,111:1:32:111:3951:-337.698,-30.5239,0	1/1:145:0,145:0:0:145:5182:-437.082,-43.6494,0	1/1:102:0,102:0:0:102:3664:-307.813,-30.7051,0	1/1:78:0,78:0:0:78:2769:-234.37,-23.4803,0	1/1:370:0,370:0:0:370:13200:-1153.99,-111.381,0	1/1:211:0,211:0:0:211:7525:-646.675,-63.5173,0	0/1:186:91,95:91:3228:95:3398:-244.172,0,-229.924	1/1:103:0,103:0:0:103:3678:-320.88,-31.0061,0	0/1:95:21,74:21:756:74:2656:-197.954,0,-37.0375	1/1:167:0,167:0:0:167:5978:-514.55,-50.272,0	0/1:326:117,208:117:4187:208:7454:-557.621,0,-271.42	0/1:454:115,338:115:4092:338:12004:-896.085,0,-215.907	1/1:28:0,28:0:0:28:1004:-87.2125,-8.42884,0	1/1:385:0,385:0:0:385:13736:-1208.21,-115.897,0	1/1:233:1,232:1:36:232:8275:-708.979,-66.6855,0	0/1:177:43,134:43:1527:134:4801:-365.951,0,-79.2234	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.67257	1/1:4:0,4:0:0:4:144:-12.7816,-1.20412,0	0/1:9:1,7:1:36:7:252:-19.0224,0,-0.691303	1/1:11:0,11:0:0:11:392:-33.617,-3.31133,0	1/1:7:0,7:0:0:7:252:-21.6806,-2.10721,0	1/1:349:0,349:0:0:349:12364:-1086.11,-105.059,0	0/1:321:93,228:93:3315:228:8158:-606.975,0,-189.546	0/1:136:64,72:64:2258:72:2547:-173.781,0,-151.08	1/1:14:0,14:0:0:14:504:-43.872,-4.21442,0	0/1:150:39,111:39:1367:111:3944:-293.407,0,-73.5885	0/1:53:24,29:24:846:29:1044:-74.5531,0,-56.5673	0/1:136:55,81:55:1955:81:2896:-209.018,0,-127.431	0/1:69:24,45:24:864:45:1594:-118.217,0,-54.0086	1/1:92:0,91:0:0:91:3146:-274.289,-27.3937,0	0/1:169:60,109:60:2156:109:3883:-290.978,0,-140.765	0/1:144:52,92:52:1872:92:3295:-235.386,0,-113.621	0/1:158:69,89:69:2458:89:3178:-230.849,0,-166.431	1/1:201:0,201:0:0:201:7188:-628.187,-60.507,0	1/1:142:0,142:0:0:142:5084:-442.598,-42.7463,0	1/1:308:0,307:0:0:307:10973:-964.786,-92.4162,0	0/1:8:3,5:3:108:5:180:-13.7042,0,-7.39932	0/1:181:66,115:66:2340:115:4132:-293.559,0,-142.858	0/1:146:42,104:42:1486:104:3720:-284.924,0,-88.0273	0/1:15:6,9:6:216:9:324:-23.2957,0,-14.0352	0/1:129:43,86:43:1548:86:3071:-226.738,0,-94.7801	0/1:62:14,46:14:504:46:1620:-122.288,0,-25.9999	1/1:6:0,6:0:0:6:212:-19.1026,-1.80618,0	1/1:9:0,9:0:0:9:324:-28.5687,-2.70927,0	1/1:136:0,136:0:0:136:4847:-417.258,-40.9401,0	1/1:225:0,225:0:0:225:8024:-697.109,-67.7318,0	.:.:.:.:.:.:.:.	0/1:187:73,114:73:2586:114:4079:-299.857,0,-172.922	1/1:292:3,288:3:108:288:10296:-887.805,-78.1424,0	1/1:151:0,151:0:0:151:5378:-462.29,-45.4555,0	1/1:67:0,67:0:0:67:2372:-207.686,-20.169,0	1/1:131:1,130:1:36:130:4652:-403.634,-35.9322,0	0/1:157:110,47:110:3932:47:1673:-99.0778,0,-293.867	1/1:81:1,80:1:36:80:2836:-241.541,-20.9289,0	1/1:125:0,125:0:0:125:4477:-377.219,-37.6288,0	1/1:152:0,152:0:0:152:5413:-478.28,-45.7566,0	1/1:45:0,45:0:0:45:1612:-139.52,-13.5464,0	1/1:294:0,294:0:0:294:10471:-883.731,-88.5028,0	0/1:139:47,92:47:1684:92:3280:-236.134,0,-100.977	1/1:169:3,166:3:100:166:5920:-503.269,-42.1806,0	1/1:153:0,153:0:0:153:5487:-480.272,-46.0576,0	1/1:122:0,122:0:0:122:4368:-370.853,-36.7257,0	1/1:162:4,158:4:144:158:5664:-466.97,-36.2327,0	0/1:4:1,3:1:32:3:108:-8.28116,0,-1.85042	1/1:139:0,139:0:0:139:4963:-426.256,-41.8432,0	0/1:208:46,162:46:1648:162:5792:-428.253,0,-76.3853	1/1:320:1,319:1:36:319:11343:-987.865,-92.8269,0	1/1:146:0,146:0:0:146:5176:-451.894,-43.9504,0	1/1:96:0,96:0:0:96:3443:-299.644,-28.8989,0	0/1:107:32,75:32:1132:75:2667:-200.909,0,-66.568	1/1:178:2,176:2:72:176:6275:-542.218,-46.9282,0	1/1:57:0,57:0:0:57:2040:-173.04,-17.1587,0	0/1:135:37,98:37:1292:98:3443:-251.08,0,-67.5339	1/1:110:0,110:0:0:110:3911:-331.707,-33.1133,0	0/1:105:47,58:47:1623:58:2079:-148.07,0,-109.332	0/1:243:125,118:125:4402:118:4196:-286.954,0,-306.554	0/1:86:48,38:48:1711:38:1368:-94.2105,0,-123.475	1/1:115:0,115:0:0:115:4101:-359.281,-34.6185,0	1/1:173:0,173:0:0:173:6212:-541.938,-52.0782,0
chr08	8838322	.	CTTAAAAGGAAT	ATTAAAAGGAAT,ATTAAAGGAAT	282074	PASS	AB=0.630636,0.360709;ABP=739.424,840.241;AC=150,36;AF=0.806452,0.193548;AN=186;AO=11706,1816;CIGAR=1X11M,1X2M1D8M;DP=13634;DPB=13482.7;DPRA=49.3877,1.21536;EPP=25422.3,3946.4;EPPR=0;GTI=4;LEN=1,11;MEANALT=2.65217,3.1087;MQM=40.809,40.565;MQMR=0;NS=93;NUMALT=2;ODDS=1.5533;PAIRED=0,0;PAIREDR=0;PAO=7,7;PQA=246,246;PQR=0;PRO=0;QA=417440,63329;QR=0;RO=0;RPL=11646,1816;RPP=24903.8,3946.4;RPPR=0;RPR=60,0;RUN=1,1;SAF=11646,1816;SAP=24903.8,3946.4;SAR=60,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48,0:0:0:48,0:1720,0:-146.737,-14.4494,0,-146.737,-14.4494,-146.737	1/1:127:0,126,0:0:0:126,0:4499,0:-381.862,-37.9298,0,-381.862,-37.9298,-381.862	1/2:153:0,102,50:0:0:102,50:3630,1741:-410.43,-132.627,-101.922,-277.902,0,-262.85	1/1:344:0,343,0:0:0:343,0:12217,0:-1067.81,-103.253,0,-1067.81,-103.253,-1067.81	1/2:111:0,72,37:0:0:72,37:2572,1276:-300.49,-99.3578,-77.6837,-201.225,0,-190.087	1/2:114:0,71,42:0:0:71,42:2525,1473:-306.635,-112.783,-91.4095,-193.953,0,-181.31	1/1:186:0,185,0:0:0:185,0:6570,0:-575.407,-55.6906,0,-575.407,-55.6906,-575.407	1/1:158:0,157,0:0:0:157,0:5598,0:-476.468,-47.2617,0,-476.468,-47.2617,-476.468	1/1:113:0,112,0:0:0:112,0:3984,0:-338.094,-33.7154,0,-338.094,-33.7154,-338.094	1/1:207:0,206,0:0:0:206,0:7350,0:-643.563,-62.0122,0,-643.563,-62.0122,-643.563	1/1:127:0,127,0:0:0:127,0:4512,0:-393.101,-38.2308,0,-393.101,-38.2308,-393.101	1/1:138:0,137,0:0:0:137,0:4916,0:-416.553,-41.2411,0,-416.553,-41.2411,-416.553	1/1:128:0,126,0:0:0:126,0:4487,0:-380.403,-37.9298,0,-380.403,-37.9298,-380.403	1/1:179:0,177,0:0:0:177,0:6303,0:-543.618,-53.2823,0,-543.618,-53.2823,-543.618	1/1:110:0,108,0:0:0:108,0:3856,0:-337.582,-32.5112,0,-337.582,-32.5112,-337.582	1/1:112:0,112,0:0:0:112,0:4001,0:-345.775,-33.7154,0,-345.775,-33.7154,-345.775	1/1:148:0,146,0:0:0:146,0:5197,0:-440.594,-43.9504,0,-440.594,-43.9504,-440.594	1/1:102:0,101,0:0:0:101,0:3592,0:-304.273,-30.404,0,-304.273,-30.404,-304.273	1/1:78:0,77,0:0:0:77,0:2751,0:-233.883,-23.1793,0,-233.883,-23.1793,-233.883	1/1:374:0,369,0:0:0:369,0:13158,0:-1152.44,-111.08,0,-1152.44,-111.08,-1152.44	1/1:216:0,212,0:0:0:212,0:7548,0:-651.422,-63.8184,0,-651.422,-63.8184,-651.422	1/2:194:0,100,93:0:0:100,93:3563,3256:-545.467,-261.038,-230.935,-284.495,0,-256.5	1/1:105:0,105,0:0:0:105,0:3752,0:-328.439,-31.6082,0,-328.439,-31.6082,-328.439	1/2:94:0,72,21:0:0:72,21:2530,745:-255.374,-58.2802,-36.606,-197.18,0,-190.858	1/1:172:0,170,0:0:0:170,0:6059,0:-523.153,-51.1751,0,-523.153,-51.1751,-523.153	1/2:334:0,209,121:0:0:209,121:7486,4233:-935.868,-338.2,-275.285,-597.757,0,-561.332	1/2:452:0,334,113:0:0:334,113:11933,3947:-1238.1,-308.266,-207.722,-929.929,0,-895.913	1/1:27:0,27,0:0:0:27,0:972,0:-84.3911,-8.12781,0,-84.3911,-8.12781,-84.3911	1/1:383:0,381,1:0:0:381,1:13609,27:-1200.33,-114.692,0,-1198.48,-112.839,-1198.17	1/1:239:0,236,3:0:0:236,3:8433,95:-727.819,-71.0431,0,-720.845,-63.7762,-719.942	1/2:183:0,137,45:0:0:137,45:4883,1563:-509.503,-123.218,-81.9771,-386.372,0,-372.826	2/2:3:0,0,3:0:0:0,3:0,108:-9.67257,-9.67257,-9.67257,-0.90309,-0.90309,0	1/1:4:0,4,0:0:0:4,0:144,0:-12.7816,-1.20412,0,-12.7816,-1.20412,-12.7816	1/2:9:0,7,2:0:0:7,2:252,60:-23.8958,-4.611,-2.50379,-19.5734,0,-18.9714	1/1:11:0,11,0:0:0:11,0:396,0:-33.876,-3.31133,0,-33.876,-3.31133,-33.876	1/1:7:0,7,0:0:0:7,0:248,0:-21.4202,-2.10721,0,-21.4202,-2.10721,-21.4202	1/1:353:0,346,0:0:0:346,0:12406,0:-1094.02,-104.156,0,-1094.02,-104.156,-1094.02	1/2:324:0,223,100:0:0:223,100:7970,3476:-893.05,-271.249,-204.119,-621.877,0,-591.774	1/2:143:0,71,70:0:0:71,70:2538,2387:-376.464,-182.508,-161.135,-194.067,0,-172.995	1/1:14:0,14,0:0:0:14,0:504,0:-43.872,-4.21442,0,-43.872,-4.21442,-43.872	1/2:151:0,111,38:0:0:111,38:3943,1339:-411.443,-104.551,-71.1366,-306.967,0,-295.528	1/2:53:0,29,24:0:0:29,24:1043,823:-145.406,-64.1954,-55.4655,-81.547,0,-74.3223	1/2:136:0,81,54:0:0:81,54:2892,1918:-374.669,-149.304,-124.921,-225.499,0,-209.243	1/2:70:0,42,26:0:0:42,26:1512,885:-189.278,-69.5838,-56.9405,-119.757,0,-111.93	1/1:94:0,93,0:0:0:93,0:3287,0:-287.203,-27.9958,0,-287.203,-27.9958,-287.203	1/2:170:0,108,61:0:0:108,61:3850,2146:-479.004,-172.328,-139.817,-306.782,0,-288.419	1/2:150:0,96,53:0:0:96,53:3415,1859:-403.521,-141.624,-112.725,-261.938,0,-245.984	1/2:166:0,91,75:0:0:91,75:3229,2572:-458.206,-202.643,-175.249,-255.902,0,-233.325	1/1:204:0,202,0:0:0:202,0:7164,0:-627.187,-60.8081,0,-627.187,-60.8081,-627.187	1/1:142:0,142,0:0:0:142,0:5055,0:-441.455,-42.7463,0,-441.455,-42.7463,-441.455	1/1:308:0,305,0:0:0:305,0:10883,0:-960.154,-91.8142,0,-960.154,-91.8142,-960.154	1/2:8:0,5,3:0:0:5,3:176,106:-22.6955,-8.749,-7.24385,-14.2907,0,-13.3876	1/2:181:0,112,68:0:0:112,68:3999,2376:-486.398,-181.119,-147.404,-305.399,0,-284.929	1/2:150:0,105,45:0:0:105,45:3736,1566:-424.291,-125.804,-94.1959,-298.832,0,-285.286	1/2:15:0,9,6:0:0:9,6:324,216:-41.5082,-16.7444,-14.0352,-25.1018,0,-23.2957	1/2:137:0,87,49:0:0:87,49:3089,1706:-37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chr08	8838356	.	TAC	TAG,GAG	210369	PASS	AB=0.553599,0.445137;ABP=279.316,292.506;AC=96,92;AF=0.510638,0.489362;AN=188;AO=6160,4929;CIGAR=2M1X,1X1M1X;DP=11103;DPB=11103.7;DPRA=0,8.02391;EPP=13379.3,10191.4;EPPR=5.18177;GTI=2;LEN=1,3;MEANALT=2.11702,2.1413;MQM=59.8726,59.6754;MQMR=60;NS=94;NUMALT=2;ODDS=1.87333;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=213466,166926;QR=25;RO=1;RPL=0,60;RPP=13379.3,10191.4;RPPR=5.18177;RPR=6160,4869;RUN=1,1;SAF=0,0;SAP=13379.3,10706.2;SAR=6160,4929;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,25,10:0:0:25,10:842,346:-96.6782,-28.46,-20.9342,-68.5614,0,-65.5511	1/2:74:0,50,24:0:0:50,24:1753,778:-205.762,-63.0948,-48.0433,-143,0,-135.775	1/2:298:0,197,101:0:0:197,101:6879,3469:-841.534,-282.016,-222.713,-559.863,0,-529.459	1/2:427:0,183,243:0:0:183,243:6367,8332:-1194.13,-676.47,-621.382,-517.724,0,-444.574	1/2:113:0,50,62:0:0:50,62:1732,2095:-310.515,-169.751,-154.699,-140.767,0,-122.103	1/2:143:0,64,79:0:0:64,79:2246,2592:-392.483,-209.711,-190.445,-183.113,0,-159.332	1/2:124:0,59,65:0:0:59,65:1972,2258:-343.555,-183.912,-166.151,-159.984,0,-140.417	1/2:141:0,100,40:0:0:100,40:3464,1345:-390.463,-108.936,-78.8335,-281.506,0,-269.465	1/2:95:0,45,50:0:0:45,50:1521,1664:-258.273,-134.982,-121.435,-123.627,0,-108.576	1/2:167:0,83,84:0:0:83,84:2893,2819:-463.864,-228.584,-203.599,-235.621,0,-210.335	1/2:93:0,48,45:0:0:48,45:1639,1533:-257.71,-124.711,-110.262,-133.34,0,-119.793	1/2:89:0,38,51:0:0:38,51:1286,1709:-242.961,-138.721,-127.282,-104.576,0,-89.2235	1/2:73:0,34,39:0:0:34,39:1160,1310:-200.57,-106.444,-96.2086,-94.4652,0,-82.725	1/2:69:0,29,40:0:0:29,40:989,1377:-192.412,-112.169,-103.439,-80.5858,0,-68.5446	1/2:80:0,43,37:0:0:43,37:1487,1290:-226.084,-105.255,-92.3111,-121.175,0,-110.037	1/2:62:0,30,32:0:0:30,32:1046,1094:-174.201,-89.1299,-80.099,-85.4161,0,-75.7832	1/2:106:0,35,71:0:0:35,71:1247,2400:-296.497,-194.849,-184.313,-101.998,0,-80.6249	1/2:72:0,47,25:0:0:47,25:1566,854:-196.375,-69.6451,-55.4967,-127.069,0,-119.543	1/2:67:0,38,29:0:0:38,29:1288,965:-182.854,-78.4163,-66.9771,-104.773,0,-96.0436	1/2:181:0,79,101:0:0:79,101:2795,3455:-508.05,-280.391,-256.609,-227.649,0,-197.245	1/2:244:0,110,134:0:0:110,134:3746,4562:-673.864,-369.971,-336.858,-304.233,0,-263.895	1/2:67:0,48,19:0:0:48,19:1689,633:-189.066,-51.5596,-37.1102,-137.845,0,-132.125	1/2:89:0,45,44:0:0:45,44:1556,1524:-250.627,-124.192,-110.646,-126.781,0,-113.536	1/2:122:0,107,14:0:0:107,14:3704,476:-339.572,-38.581,-6.3708,-300.973,0,-296.758	1/2:49:0,30,19:0:0:30,19:1036,644:-136.733,-52.5587,-43.5278,-84.5152,0,-78.7957	1/2:328:0,203,125:0:0:203,125:7049,4177:-911.519,-338.482,-277.373,-573.376,0,-535.747	1/2:231:0,113,118:0:0:113,118:3939,4028:-647.496,-327.159,-293.142,-320.682,0,-285.161	1/2:41:0,28,13:0:0:28,13:958,406:-110.692,-32.9142,-24.4853,-78.0999,0,-74.1865	1/2:199:0,129,70:0:0:129,70:4469,2395:-557.935,-194.723,-155.89,-363.555,0,-342.483	1/2:185:0,84,101:0:0:84,101:2917,3391:-512.127,-274.989,-249.703,-237.48,0,-207.076	1/2:147:0,72,74:0:0:72,74:2491,2512:-406.123,-203.702,-182.028,-202.423,0,-180.147	1/2:13:0,6,7:0:0:6,7:203,245:-36.7305,-20.2837,-18.4775,-16.7903,0,-14.6831	1/2:33:0,13,20:0:0:13,20:440,664:-89.7183,-54.0458,-50.1325,-36.0082,0,-29.9876	1/2:12:0,3,9:0:0:3,9:108,302:-33.6138,-24.7954,-23.8923,-9.17208,0,-6.46281	1/2:12:0,3,9:0:0:3,9:108,278:-31.4373,-22.6123,-21.7092,-9.17208,0,-6.46281	1/1:21:0,21,0:0:0:21,0:726,0:-65.6585,-6.32163,0,-65.6585,-6.32163,-65.6585	1/2:207:0,100,107:0:0:100,107:3496,3587:-575.178,-290.768,-260.665,-284.752,0,-252.542	1/2:203:0,125,78:0:0:125,78:4377,2587:-565.662,-209.586,-171.958,-356.414,0,-332.934	1/2:70:0,41,29:0:0:41,29:1434,980:-196.436,-79.7758,-67.4336,-117.003,0,-108.273	1/2:15:0,8,7:0:0:8,7:276,240:-42.2501,-19.8268,-17.4185,-22.767,0,-20.6598	1/2:186:0,114,72:0:0:114,72:3977,2429:-520.627,-197.173,-162.856,-323.795,0,-302.121	1/2:75:0,37,38:0:0:37,38:1266,1241:-203.3,-100.537,-89.3991,-103.097,0,-91.6581	1/2:106:0,75,31:0:0:75,31:2591,1031:-294.264,-83.7569,-61.1796,-210.844,0,-201.512	1/2:76:1,45,30:1:25:45,30:1578,1041:-210.878,-82.7698,-71.1691,-126.559,0,-119.475	1/2:67:0,34,33:0:0:34,33:1152,1071:-180.163,-86.7495,-76.5145,-93.7447,0,-83.8107	1/2:102:0,72,30:0:0:72,30:2543,997:-287.981,-80.9986,-59.3245,-207.321,0,-198.29	1/2:109:0,71,37:0:0:71,37:2485,1256:-304.177,-101.99,-80.6169,-202.33,0,-191.191	1/2:254:0,117,136:0:0:117,136:4058,4628:-704.962,-375.115,-339.895,-329.831,0,-288.891	1/2:110:0,63,47:0:0:63,47:2200,1591:-308.279,-129.323,-110.358,-179.299,0,-165.151	1/2:184:0,126,58:0:0:126,58:4357,1988:-515.717,-161.683,-123.754,-354.378,0,-336.918	1/2:268:0,137,130:0:0:137,130:4767,4368:-741.538,-353.927,-312.686,-387.711,0,-348.578	1/2:32:0,19,13:0:0:19,13:656,443:-89.5766,-36.2815,-30.5619,-53.6375,0,-49.7241	1/2:179:0,129,50:0:0:129,50:4478,1689:-500.955,-137.234,-98.4014,-364.061,0,-349.01	1/2:54:0,31,23:0:0:31,23:1094,801:-154.57,-65.4842,-56.1523,-89.4363,0,-82.5126	1/2:46:0,27,19:0:0:27,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chr08	8838409	.	G	T	18966.7	PASS	AB=0.325266;ABP=1175.45;AC=34;AF=0.180851;AN=188;AO=1448;CIGAR=1X;DP=11521;DPB=11521;DPRA=1.37869;EPP=3147.3;EPPR=21876.3;GTI=2;LEN=1;MEANALT=1;MQM=59.5698;MQMR=59.8442;NS=94;NUMALT=1;ODDS=1.5218;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51683;QR=360741;RO=10073;RPL=1448;RPP=3147.3;RPPR=21876.3;RPR=0;RUN=1;SAF=0;SAP=3147.3;SAR=1448;SRF=0;SRP=21876.3;SRR=10073;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.342	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.798	0/1:301:210,91:210:7528:91:3241:-201.27,0,-586.923	0/0:449:448,1:448:16048:1:25:0,-132.665,-1441.29	0/1:111:81,30:81:2888:30:1072:-63.3653,0,-226.734	0/1:144:106,38:106:3789:38:1356:-78.9608,0,-297.836	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.6	0/0:146:146,0:146:5196:0:0:0,-43.9504,-467.584	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.877	0/0:171:171,0:171:6112:0:0:0,-51.4761,-550.168	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.17	0/0:90:90,0:90:3202:0:0:0,-27.0927,-288.374	0/0:80:80,0:80:2846:0:0:0,-24.0824,-256.368	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.029	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.709	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:111:111,0:111:3952:0:0:0,-33.4143,-355.821	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.184	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.674	0/0:188:187,1:187:6692:1:36:0,-52.9954,-598.733	0/0:254:254,0:254:9112:0:0:0,-76.4616,-819.24	0/1:69:34,35:34:1224:35:1260:-92.9344,0,-89.6927	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.947	0/1:122:61,61:61:2192:61:2177:-159.453,0,-160.811	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:345:235,110:235:8436:110:3926:-249.67,0,-655.37	0/1:241:191,50:191:6856:50:1788:-88.639,0,-544.339	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.749	0/0:207:207,0:207:7416:0:0:0,-62.3132,-667.483	0/0:185:184,1:184:6596:1:32:0,-52.4912,-590.501	0/1:146:107,39:107:3832:39:1395:-81.8955,0,-301.117	0/0:13:12,1:12:432:1:36:0,-0.320217,-35.628	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.026	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0962	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:217:217,0:217:7788:0:0:0,-65.3235,-700.764	0/1:213:153,60:153:5469:60:2129:-127.699,0,-428.193	0/1:75:54,21:54:1944:21:744:-44.7022,0,-152.659	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:195:134,61:134:4800:61:2177:-137.491,0,-373.424	0/1:77:67,10:67:2396:10:360:-9.56499,0,-192.713	0/1:114:65,49:65:2328:49:1741:-122.633,0,-174.685	0/1:79:54,25:54:1940:25:900:-57.5268,0,-151.095	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.485	0/1:102:58,44:58:2067:44:1574:-111.228,0,-155.595	0/1:117:75,42:75:2688:42:1504:-99.7983,0,-206.934	0/1:265:217,48:217:7796:48:1705:-73.9538,0,-621.673	0/0:116:116,0:116:4152:0:0:0,-34.9195,-373.859	0/0:190:189,1:189:6764:1:36:0,-53.6472,-605.263	0/0:278:278,0:278:9968:0:0:0,-83.6863,-897.041	0/1:33:22,11:22:788:11:392:-25.6861,0,-61.3108	0/1:186:108,78:108:3860:78:2773:-193.537,0,-291.598	0/1:55:36,19:36:1296:19:680:-44.9725,0,-100.387	0/1:49:39,10:39:1404:10:360:-17.9938,0,-111.909	0/1:181:129,52:129:4620:52:1868:-113.865,0,-361.466	0/1:77:55,22:55:1968:22:788:-48.0609,0,-154.206	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:39:31,8:31:1116:8:288:-14.5263,0,-89.0106	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.103	0/0:139:138,1:138:4939:1:36:0,-38.2449,-441.054	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:284:170,114:170:6088:114:4081:-281.974,0,-462.528	0/0:222:220,2:220:7896:2:68:0,-60.3709,-704.193	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:177:177,0:177:6336:0:0:0,-53.2823,-570.321	0/0:263:261,2:261:9340:2:72:0,-72.3342,-833.58	0/1:141:41,100:41:1468:100:3554:-277.613,0,-89.9663	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.5	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.064	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.59	0/0:152:152,0:152:5432:0:0:0,-45.7566,-489.006	0/1:97:75,22:75:2688:22:780:-41.3094,0,-212.905	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.725	0/0:281:281,0:281:10060:0:0:0,-84.5894,-904.699	0/0:199:199,0:199:7128:0:0:0,-59.905,-641.566	0/0:218:218,0:218:7792:0:0:0,-65.6245,-701.189	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:217:217,0:217:7768:0:0:0,-65.3235,-699.14	0/1:201:141,60:141:5032:60:2133:-131.676,0,-392.511	0/0:237:237,0:237:8438:0:0:0,-71.3441,-759.4	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.066	0/1:76:47,29:47:1680:29:1044:-71.2584,0,-128.609	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.598	0/1:91:67,24:67:2408:24:864:-50.6582,0,-189.579	0/0:87:87,0:87:3107:0:0:0,-26.1896,-279.84	0/1:36:25,11:25:896:11:392:-24.783,0,-70.114	0/1:88:61,27:61:2180:27:968:-60.9137,0,-169.962	0/1:58:28,30:28:1004:30:1076:-79.6884,0,-73.2161	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.775	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.49
chr08	8841434	.	G	A	54002.9	PASS	AB=0.517739;ABP=20.8066;AC=36;AF=0.191489;AN=188;AO=3422;CIGAR=1X;DP=16582;DPB=16582;DPRA=1.18284;EPP=7373.11;EPPR=28453.8;GTI=0;LEN=1;MEANALT=1;MQM=40.8591;MQMR=43.045;NS=94;NUMALT=1;ODDS=0.623083;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122161;QR=467617;RO=13158;RPL=7;RPP=7373.11;RPPR=28453.8;RPR=3415;RUN=1;SAF=0;SAP=7433.79;SAR=3422;SRF=0;SRP=28575.2;SRR=13158;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1100:0:0:0,-9.33193,-97.801	0/0:243:243,0:243:8651:0:0:0,-73.1503,-761.797	0/1:184:93,91:93:3313:91:3256:-228.273,0,-235.618	0/0:429:429,0:429:15289:0:0:0,-129.142,-1342.88	0/1:95:54,41:54:1910:41:1464:-98.306,0,-140.108	0/1:187:88,99:88:3118:99:3544:-249.775,0,-219.866	0/0:208:208,0:208:7385:0:0:0,-62.6142,-648.346	0/0:191:191,0:191:6772:0:0:0,-57.4967,-598.466	0/0:106:106,0:106:3765:0:0:0,-31.9092,-331.244	0/0:174:174,0:174:6184:0:0:0,-52.3792,-544.51	0/0:175:175,0:175:6158:0:0:0,-52.6802,-536.508	0/0:127:127,0:127:4472:0:0:0,-38.2308,-394.304	0/0:95:95,0:95:3336:0:0:0,-28.5978,-293.889	0/0:221:221,0:221:7820:0:0:0,-66.5276,-687.64	0/0:104:104,0:104:3715:0:0:0,-31.3071,-325.792	0/0:86:86,0:86:3019:0:0:0,-25.8886,-266.067	0/0:171:171,0:171:6101:0:0:0,-51.4761,-538.176	0/0:110:110,0:110:3889:0:0:0,-33.1133,-343.48	0/0:70:70,0:70:2503:0:0:0,-21.0721,-220.089	0/0:424:424,0:424:15109:0:0:0,-127.637,-1328.58	0/0:221:221,0:221:7865:0:0:0,-66.5276,-691.326	0/1:215:67,148:67:2382:148:5280:-391.828,0,-144.14	0/0:39:39,0:39:1387:0:0:0,-11.7402,-122.236	0/1:154:82,72:82:2927:72:2568:-177.564,0,-210.813	0/0:126:126,0:126:4495:0:0:0,-37.9298,-393.479	0/1:889:416,473:416:14795:473:16914:-1191.08,0,-1031.78	0/1:338:168,170:168:5993:170:6075:-427.383,0,-424.143	0/0:46:46,0:46:1637:0:0:0,-13.8474,-144.521	0/0:409:409,0:409:14593:0:0:0,-123.121,-1279.67	0/0:483:450,33:450:15955:33:1188:0,-41.4888,-1299.02	0/1:155:92,63:92:3285:63:2251:-149.147,0,-241.988	0/1:15:4,11:4:140:11:392:-29.9895,0,-8.18466	0/0:70:70,0:70:2487:0:0:0,-21.0721,-218.556	0/1:7:4,3:4:144:3:108:-7.63874,0,-11.0547	0/0:18:18,0:18:636:0:0:0,-5.41854,-56.0374	0/0:25:25,0:25:891:0:0:0,-7.52575,-78.8009	0/0:268:268,0:268:9469:0:0:0,-80.676,-832.606	0/1:215:115,100:115:4106:100:3583:-244.62,0,-291.318	0/1:141:73,68:73:2579:68:2414:-167.592,0,-184.662	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.2734	0/1:323:149,174:149:5321:174:6232:-445.569,0,-369.768	0/1:61:24,37:24:860:37:1317:-94.2029,0,-57.6866	0/1:271:116,155:116:4085:155:5504:-396.961,0,-278.096	0/1:97:38,59:38:1351:59:2087:-151.478,0,-89.3279	0/0:79:79,0:79:2817:0:0:0,-23.7814,-245.871	0/1:86:60,26:60:2139:26:928:-54.8555,0,-161.96	0/1:173:103,70:103:3672:70:2488:-164.138,0,-272.892	0/1:239:132,107:132:4709:107:3832:-259.593,0,-341.558	0/0:160:158,2:158:5611:2:68:0,-41.7071,-485.302	0/0:384:384,0:384:13661:0:0:0,-115.596,-1200.53	0/0:200:200,0:200:7102:0:0:0,-60.206,-624.573	0/1:57:26,31:26:910:31:1107:-78.7088,0,-62.419	0/1:367:169,198:169:6050:198:7076:-502.307,0,-422.488	0/1:85:49,36:49:1748:36:1273:-84.7034,0,-128.765	0/1:11:4,7:4:144:7:252:-18.9651,0,-9.77232	0/1:291:141,150:141:5001:150:5365:-380.661,0,-351.877	0/1:30:23,7:23:809:7:252:-13.0778,0,-62.5705	0/0:46:46,0:46:1643:0:0:0,-13.8474,-144.29	0/1:37:14,23:14:500:23:819:-60.0138,0,-33.2672	0/0:222:221,0:221:7850:0:0:0,-66.5276,-687.07	0/0:218:215,3:215:7633:3:108:0,-56.9609,-659.279	0/0:28:28,0:28:966:0:0:0,-8.42884,-85.5048	0/1:309:171,138:171:6112:138:4959:-335.571,0,-443.882	0/0:336:336,0:336:11991:0:0:0,-101.146,-1052.46	0/0:97:97,0:97:3419:0:0:0,-29.1999,-300.561	0/0:148:148,0:148:5275:0:0:0,-44.5524,-462.735	0/0:204:203,1:203:7243:1:36:0,-57.9556,-632.886	0/1:250:74,176:74:2652:176:6291:-468.74,0,-157.232	0/0:109:107,2:107:3747:2:72:0,-26.1989,-324.292	0/0:118:117,1:117:4166:1:36:0,-32.0408,-363.764	0/0:173:173,0:173:6167:0:0:0,-52.0782,-540.674	0/0:52:52,0:52:1838:0:0:0,-15.6536,-161.044	0/0:115:115,0:115:4083:0:0:0,-34.6184,-359.376	0/1:48:23,25:23:816:25:896:-63.7477,0,-58.0323	0/0:196:196,0:196:6919:0:0:0,-59.0019,-606.383	0/0:453:453,0:453:16185:0:0:0,-136.367,-1422.84	0/0:314:314,0:314:11122:0:0:0,-94.5234,-978.536	0/0:417:413,4:413:14708:4:144:0,-112.651,-1284.53	0/1:30:13,17:13:459:17:612:-44.4499,0,-31.2251	0/0:272:269,3:269:9572:3:108:0,-72.6008,-831.696	0/1:331:184,147:184:6551:147:5224:-354.896,0,-475.585	0/0:210:209,1:209:7412:1:36:0,-59.7618,-645.723	0/0:128:128,0:128:4508:0:0:0,-38.5318,-396.408	0/0:130:130,0:130:4624:0:0:0,-39.1339,-405.826	0/1:148:62,86:62:2194:86:3032:-217.692,0,-148.726	0/0:166:166,0:166:5882:0:0:0,-49.971,-516.588	0/0:59:59,0:59:2105:0:0:0,-17.7608,-186.018	0/1:115:66,49:66:2368:49:1750:-117.968,0,-174.188	0/0:105:105,0:105:3710:0:0:0,-31.6081,-328.027	0/1:205:97,108:97:3456:108:3848:-273.769,0,-241.22	0/1:263:114,149:114:4062:149:5292:-378.826,0,-277.494	0/1:89:32,57:32:1126:57:2044:-150.705,0,-72.4783	0/0:108:107,1:107:3786:1:36:0,-29.0567,-329.458	0/0:149:148,0:148:5222:0:0:0,-44.5524,-457.719
chr08	8842815	.	A	G	385164	PASS	AB=0.466105;ABP=72.9316;AC=152;AF=0.808511;AN=188;AO=14760;CIGAR=1X;DP=18525;DPB=18525;DPRA=0;EPP=32053.9;EPPR=8163.4;GTI=0;LEN=1;MEANALT=1.07447;MQM=49.557;MQMR=55.797;NS=94;NUMALT=1;ODDS=1.8625;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=518953;QR=134039;RO=3758;RPL=6833;RPP=179.087;RPPR=146.314;RPR=7927;RUN=1;SAF=6833;SAP=179.087;SAR=7927;SRF=1630;SRP=146.314;SRR=2128;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:99:0,99:0:0:99:3443:-304.609,-29.802,0	1/1:252:0,252:0:0:252:8880:-752.959,-75.8596,0	0/1:299:159,140:159:5667:140:4907:-338.027,0,-418.107	1/1:406:0,406:0:0:406:14209:-1259.72,-122.218,0	0/1:64:32,31:32:1137:31:1054:-72.9477,0,-82.8643	0/1:64:35,29:35:1248:29:1023:-66.9569,0,-92.6469	1/1:118:0,118:0:0:118:4153:-364.126,-35.5215,0	1/1:322:1,321:1:36:321:11342:-956.573,-93.3582,0	1/1:294:0,294:0:0:294:10292:-889.843,-88.5028,0	1/1:225:0,225:0:0:225:7945:-696.429,-67.7318,0	1/1:85:0,85:0:0:85:2989:-260.772,-25.5876,0	1/1:194:1,193:1:36:193:6731:-577.383,-54.8264,0	1/1:150:0,150:0:0:150:5293:-453.087,-45.1545,0	1/1:140:0,140:0:0:140:4895:-420.258,-42.1442,0	1/1:187:1,185:1:36:185:6473:-561.703,-52.7531,0	1/1:119:0,119:0:0:119:4204:-365.722,-35.8226,0	1/1:115:1,114:1:32:114:4054:-337.552,-31.4292,0	1/1:119:0,119:0:0:119:4211:-352.116,-35.8226,0	1/1:68:0,68:0:0:68:2410:-202.488,-20.47,0	1/1:462:0,462:0:0:462:16213:-1430.97,-139.076,0	1/1:400:0,400:0:0:400:13976:-1211.67,-120.412,0	0/1:172:111,61:111:3952:61:2101:-134.88,0,-303.915	1/1:240:1,239:1:36:239:8366:-738.284,-68.6489,0	0/1:132:59,73:59:2084:73:2583:-185.054,0,-147.632	1/1:170:0,170:0:0:170:5948:-519.686,-51.1751,0	0/1:647:351,296:351:12493:296:10396:-720.812,0,-926.94	0/1:734:349,385:349:12481:385:13522:-953.267,0,-898.89	1/1:85:0,85:0:0:85:2997:-260.484,-25.5876,0	1/1:671:0,671:0:0:671:23683:-2094.71,-201.991,0	1/1:177:4,173:4:144:173:6055:-515.589,-39.9828,0	0/1:231:113,118:113:4011:118:4158:-294.136,0,-290.33	0/1:11:4,7:4:140:7:237:-17.4159,0,-9.62757	1/1:24:0,24:0:0:24:856:-72.0411,-7.22472,0	0/1:10:5,5:5:180:5:172:-12.1598,0,-13.5418	1/1:15:0,15:0:0:15:531:-46.7873,-4.51545,0	1/1:8:0,8:0:0:8:284:-24.7792,-2.40824,0	1/1:411:1,410:1:36:410:14491:-1267.05,-120.125,0	0/1:311:178,133:178:6363:133:4657:-310.808,0,-476.505	0/1:100:52,48:52:1859:48:1682:-113.085,0,-136.122	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:269:123,146:123:4385:146:5153:-369.728,0,-313.333	0/1:52:29,23:29:1040:23:800:-53.3224,0,-77.1457	0/1:310:158,151:158:5620:151:5337:-371.627,0,-411.669	0/1:166:95,71:95:3395:71:2492:-166.669,0,-254.943	1/1:124:0,124:0:0:124:4330:-378.25,-37.3277,0	0/1:165:78,87:78:2799:87:3080:-224.339,0,-202.388	0/1:246:136,110:136:4865:110:3880:-255.809,0,-362.54	0/1:297:126,170:126:4472:170:5931:-435.605,0,-312.366	1/1:224:1,223:1:36:223:7810:-682.662,-63.8324,0	1/1:277:0,277:0:0:277:9776:-854.781,-83.3853,0	1/1:301:1,299:1:36:299:10482:-927.477,-87.0706,0	0/1:11:6,5:6:216:5:180:-12.5267,0,-16.4238	0/1:298:153,144:153:5450:144:5036:-346.729,0,-399.621	0/1:102:65,37:65:2321:37:1287:-84.7703,0,-178.368	0/1:11:3,8:3:108:8:284:-20.5951,0,-6.76384	0/1:298:163,135:163:5820:135:4773:-330.057,0,-432.24	0/1:97:61,36:61:2184:36:1262:-82.4912,0,-167.309	1/1:6:0,6:0:0:6:216:-19.5749,-1.80618,0	0/1:23:17,6:17:612:6:216:-12.4357,0,-48.2305	1/1:165:0,165:0:0:165:5784:-501.746,-49.67,0	1/1:175:2,173:2:57:173:6063:-524.718,-47.2669,0	1/1:14:0,14:0:0:14:491:-42.2908,-4.21442,0	0/1:392:209,183:209:7487:183:6473:-454.922,0,-554.837	1/1:306:1,305:1:36:305:10782:-941.01,-88.5321,0	1/1:128:0,128:0:0:128:4476:-389.685,-38.5318,0	1/1:170:0,170:0:0:170:5976:-527.7,-51.1751,0	1/1:343:2,341:2:72:341:12059:-1052.83,-96.4166,0	0/1:328:235,93:235:8377:93:3270:-190.607,0,-653.814	1/1:43:0,43:0:0:43:1505:-132.291,-12.9443,0	1/1:142:1,141:1:36:141:4909:-414.793,-39.148,0	1/1:148:0,148:0:0:148:5221:-458.895,-44.5524,0	1/1:34:0,34:0:0:34:1194:-104.129,-10.235,0	1/1:130:0,130:0:0:130:4515:-395.241,-39.1339,0	0/1:200:86,114:86:3057:114:4000:-285.928,0,-214.57	1/1:387:1,386:1:36:386:13517:-1164,-112.916,0	1/1:389:0,389:0:0:389:13790:-1214.87,-117.101,0	1/1:144:0,144:0:0:144:5043:-429.328,-43.3483,0	1/1:280:1,279:1:36:279:9833:-827.844,-80.6901,0	0/1:10:3,7:3:104:7:252:-18.409,0,-6.63673	1/1:278:0,277:0:0:277:9765:-851.63,-83.3853,0	0/1:259:145,114:145:5168:114:3970:-266.475,0,-385.303	1/1:446:0,446:0:0:446:15728:-1378.49,-134.259,0	1/1:152:0,152:0:0:152:5309:-459.468,-45.7566,0	1/1:125:0,125:0:0:125:4429:-388.994,-37.6288,0	0/1:189:111,78:111:3958:78:2766:-179.914,0,-298.409	1/1:311:0,311:0:0:311:10988:-957.974,-93.6203,0	1/1:65:0,65:0:0:65:2306:-191.899,-19.567,0	0/1:146:82,64:82:2920:64:2256:-146.466,0,-216.847	1/1:132:0,132:0:0:132:4606:-393.982,-39.736,0	0/1:68:32,36:32:1148:36:1267:-87.7607,0,-82.8985	0/1:140:65,75:65:2309:75:2629:-183.288,0,-164.712	0/1:155:108,47:108:3872:47:1645:-95.1101,0,-301.347	1/1:278:1,277:1:36:277:9767:-860.739,-80.0881,0	1/1:237:0,237:0:0:237:8340:-726.856,-71.3441,0
chr08	8872862	.	TTA	ATG,ATA	197100	PASS	AB=0.478902,0.518737;ABP=16.1128,13.3448;AC=151,35;AF=0.811828,0.188172;AN=186;AO=7356,1772;CIGAR=1X1M1X,1X2M;DP=9153;DPB=9153.33;DPRA=0,1.01059;EPP=15889.6,3850.86;EPPR=5.18177;GTI=0;LEN=3,1;MEANALT=1.70968,2.2093;MQM=59.7476,59.833;MQMR=60;NS=93;NUMALT=2;ODDS=5.09336;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=258938,63210;QR=36;RO=1;RPL=7346,1772;RPP=15889.6,3850.86;RPPR=5.18177;RPR=10,0;RUN=1,1;SAF=7356,1772;SAP=15976.4,3850.86;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,35,0:0:0:35,0:1229,0:-110.507,-10.5361,0,-110.507,-10.5361,-110.507	1/1:133:0,133,0:0:0:133,0:4686,0:-421.891,-40.037,0,-421.891,-40.037,-421.891	1/2:108:0,51,57:0:0:51,57:1783,2025:-310.126,-165.082,-149.73,-145.396,0,-128.237	1/1:213:0,213,0:0:0:213,0:7420,0:-667.048,-64.1194,0,-667.048,-64.1194,-667.048	1/2:99:0,46,52:0:0:46,52:1630,1860:-284.475,-151.696,-137.848,-132.804,0,-117.151	1/2:27:0,6,21:0:0:6,21:214,748:-78.7646,-61.3194,-59.5132,-17.8016,0,-11.48	1/1:166:0,166,0:0:0:166,0:5813,0:-523.235,-49.971,0,-523.235,-49.971,-523.235	1/1:150:0,149,0:0:0:149,0:5217,0:-469.241,-44.8535,0,-469.241,-44.8535,-469.241	1/1:94:0,93,0:0:0:93,0:3286,0:-295.539,-27.9958,0,-295.539,-27.9958,-295.539	1/1:146:0,146,0:0:0:146,0:5107,0:-459.776,-43.9504,0,-459.776,-43.9504,-459.776	1/1:66:0,66,0:0:0:66,0:2305,0:-207.708,-19.868,0,-207.708,-19.868,-207.708	1/1:73:0,72,1:0:0:72,1:2491,36:-224.075,-21.6742,0,-221.138,-18.3769,-220.836	1/1:83:0,81,0:0:0:81,0:2849,0:-255.984,-24.3834,0,-255.984,-24.3834,-255.984	1/1:98:0,98,0:0:0:98,0:3482,0:-313.589,-29.5009,0,-313.589,-29.5009,-313.589	1/1:61:0,61,0:0:0:61,0:2152,0:-193.913,-18.3628,0,-193.913,-18.3628,-193.913	1/1:68:0,68,0:0:0:68,0:2417,0:-217.54,-20.47,0,-217.54,-20.47,-217.54	1/1:92:0,92,0:0:0:92,0:3238,0:-291.634,-27.6948,0,-291.634,-27.6948,-291.634	1/1:62:0,62,0:0:0:62,0:2203,0:-198.526,-18.6639,0,-198.526,-18.6639,-198.526	1/1:19:0,19,0:0:0:19,0:670,0:-60.6197,-5.71957,0,-60.6197,-5.71957,-60.6197	1/1:172:0,172,0:0:0:172,0:6026,0:-542.16,-51.7772,0,-542.16,-51.7772,-542.16	1/1:118:0,118,0:0:0:118,0:4119,0:-370.672,-35.5215,0,-370.672,-35.5215,-370.672	1/2:166:0,37,129:0:0:37,129:1290,4615:-481.589,-376.68,-365.542,-105.26,0,-66.4273	1/1:74:0,72,2:0:0:72,2:2519,72:-226.599,-21.6742,0,-220.724,-15.4395,-220.122	1/2:125:0,70,55:0:0:70,55:2455,1964:-359.688,-160.4,-139.328,-199.642,0,-183.085	1/1:93:0,93,0:0:0:93,0:3268,0:-294.342,-27.9958,0,-294.342,-27.9958,-294.342	1/2:316:0,167,148:0:0:167,148:5901,5285:-911.132,-430.873,-380.601,-480.254,0,-435.702	1/2:234:0,109,123:0:0:109,123:3850,4385:-670.907,-357.383,-324.57,-313.573,0,-276.546	1/1:31:0,31,0:0:0:31,0:1100,0:-99.274,-9.33193,0,-99.274,-9.33193,-99.274	1/1:322:0,321,0:0:0:321,0:11298,0:-1016.39,-96.6306,0,-1016.39,-96.6306,-1016.39	1/1:86:0,83,2:0:0:83,2:2918,57:-262.543,-24.9855,0,-258.018,-20.5091,-257.416	1/2:98:0,60,38:0:0:60,38:2117,1360:-283.63,-111.259,-93.1975,-172.727,0,-161.288	1/2:6:0,3,3:0:0:3,3:108,108:-17.9781,-9.16568,-8.26259,-9.17208,0,-8.26899	1/1:7:0,7,0:0:0:7,0:244,0:-22.2989,-2.10721,0,-22.2989,-2.10721,-22.2989	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:2:0,2,0:0:0:2,0:72,0:-6.8332,-0.60206,0,-6.8332,-0.60206,-6.8332	1/1:8:0,8,0:0:0:8,0:284,0:-25.9036,-2.40824,0,-25.9036,-2.40824,-25.9036	1/1:208:0,208,0:0:0:208,0:7384,0:-663.743,-62.6142,0,-663.743,-62.6142,-663.743	1/2:163:0,81,82:0:0:81,82:2875,2905:-471.206,-236.986,-212.603,-234.574,0,-209.89	1/2:70:0,40,30:0:0:40,30:1396,1076:-201.656,-88.1186,-76.0774,-113.892,0,-104.861	.:.:.:.:.:.:.:.	1/2:106:0,44,62:0:0:44,62:1538,2216:-306.104,-181.038,-167.792,-125.419,0,-106.755	1/2:38:0,24,14:0:0:24,14:844,500:-109.798,-41.1187,-33.8939,-69.0346,0,-64.8202	1/2:199:0,68,131:0:0:68,131:2379,4674:-574.584,-381.357,-360.887,-193.579,0,-154.144	1/2:91:0,56,35:0:0:56,35:2005,1256:-266.317,-102.809,-85.9516,-163.866,0,-153.33	1/1:47:0,47,0:0:0:47,0:1652,0:-148.948,-14.1484,0,-148.948,-14.1484,-148.948	1/2:70:0,32,38:0:0:32,38:1146,1364:-205.08,-111.622,-101.989,-93.817,0,-82.3779	1/2:131:0,53,78:0:0:53,78:1799,2769:-371.829,-225.959,-210.005,-146.215,0,-122.735	1/2:137:0,69,66:0:0:69,66:2436,2364:-391.154,-192.791,-172.02,-198.359,0,-178.491	1/1:112:0,112,0:0:0:112,0:3953,0:-355.936,-33.7154,0,-355.936,-33.7154,-355.936	1/1:175:0,175,0:0:0:175,0:6179,0:-556.207,-52.6803,0,-556.207,-52.6803,-556.207	1/1:118:0,118,0:0:0:118,0:4169,0:-375.309,-35.5215,0,-375.309,-35.5215,-375.309	1/2:10:0,6,4:0:0:6,4:216,144:-29.734,-12.1095,-10.3033,-17.9843,0,-16.7802	1/2:101:0,52,49:0:0:52,49:1849,1732:-292.092,-141.411,-125.757,-151.035,0,-136.285	1/2:27:0,12,15:0:0:12,15:432,540:-79.6701,-44.4211,-40.8087,-35.6088,0,-31.0934	1/2:15:0,8,7:0:0:8,7:288,252:-44.4211,-20.9217,-18.5135,-23.8592,0,-21.752	1/2:114:0,61,53:0:0:61,53:2149,1880:-328.48,-153.519,-135.157,-175.314,0,-159.359	1/2:50:0,20,30:0:0:20,30:688,1072:-143.629,-87.7616,-81.741,-56.2168,0,-47.1859	1/1:8:0,8,0:0:0:8,0:288,0:-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chr08	8872895	.	CAGTC	CAGTT,AAGTT	146543	PASS	AB=0.41763,0.576228;ABP=166.134,142.716;AC=152,36;AF=0.808511,0.191489;AN=188;AO=5159,1619;CIGAR=4M1X,1X3M1X;DP=6823;DPB=6824;DPRA=0,1.30196;EPP=11197,3518.62;EPPR=16.0391;GTI=3;LEN=1,5;MEANALT=1.89362,2.51064;MQM=59.9669,59.9259;MQMR=49.3333;NS=94;NUMALT=2;ODDS=0.812895;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=90,90;PQR=0;PRO=0;QA=184463,56869;QR=210;RO=6;RPL=1,0;RPP=11197,3518.62;RPPR=16.0391;RPR=5158,1619;RUN=1,1;SAF=2,0;SAP=11188.3,3518.62;SAR=5157,1619;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,43,0:0:0:43,0:1544,0:-138.922,-12.9443,0,-138.922,-12.9443,-138.922	1/1:84:0,81,0:0:0:81,0:2886,0:-259.598,-24.3834,0,-259.598,-24.3834,-259.598	1/2:139:0,55,83:0:0:55,83:1966,2956:-401.285,-240.987,-224.43,-160.352,0,-135.366	1/1:146:0,145,1:0:0:145,1:5191,35:-466.978,-43.6494,0,-464.13,-40.4518,-463.829	1/2:62:0,34,28:0:0:34,28:1216,972:-178.521,-79.3608,-69.1258,-99.5115,0,-91.0827	1/2:45:0,33,12:0:0:33,12:1184,407:-129.933,-33.3425,-23.4086,-96.9343,0,-93.322	1/1:65:0,65,0:0:0:65,0:2303,0:-207.528,-19.567,0,-207.528,-19.567,-207.528	1/1:76:0,76,0:0:0:76,0:2721,0:-245.133,-22.8783,0,-245.133,-22.8783,-245.133	1/1:87:0,85,0:0:0:85,0:3033,0:-272.869,-25.5876,0,-272.869,-25.5876,-272.869	1/1:69:0,69,0:0:0:69,0:2430,0:-218.952,-20.7711,0,-218.952,-20.7711,-218.952	1/1:49:0,49,0:0:0:49,0:1756,0:-158.324,-14.7505,0,-158.324,-14.7505,-158.324	1/1:81:0,81,0:0:0:81,0:2908,0:-261.955,-24.3834,0,-261.955,-24.3834,-261.955	1/1:73:0,73,0:0:0:73,0:2624,0:-236.407,-21.9752,0,-236.407,-21.9752,-236.407	1/1:63:0,63,0:0:0:63,0:2264,0:-204.021,-18.9649,0,-204.021,-18.9649,-204.021	1/1:44:0,44,0:0:0:44,0:1572,0:-141.772,-13.2453,0,-141.772,-13.2453,-141.772	1/1:46:0,46,0:0:0:46,0:1648,0:-148.609,-13.8474,0,-148.609,-13.8474,-148.609	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/1:36:0,36,0:0:0:36,0:1288,0:-116.224,-10.8371,0,-116.224,-10.8371,-116.224	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/1:164:1,162,0:1:36:162,0:5781,0:-516.843,-45.7896,0,-517.144,-48.7669,-520.082	1/1:125:0,124,1:0:0:124,1:4452,36:-400.331,-37.3277,0,-397.393,-34.0305,-397.092	1/2:88:0,26,62:0:0:26,62:913,2176:-251.748,-177.441,-169.615,-74.6572,0,-55.9934	1/1:51:0,48,3:0:0:48,3:1719,108:-154.635,-14.4494,0,-145.823,-5.27736,-144.92	1/2:19:0,13,5:0:0:13,5:468,170:-51.9791,-13.7801,-9.86676,-38.1957,0,-36.6905	1/1:62:0,62,0:0:0:62,0:2212,0:-199.343,-18.6639,0,-199.343,-18.6639,-199.343	1/2:204:0,74,128:0:0:74,128:2654,4461:-579.322,-362.848,-340.572,-216.542,0,-178.01	1/2:190:0,78,111:0:0:78,111:2796,3927:-547.866,-319.823,-296.342,-228.04,0,-194.626	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/1:183:0,182,0:0:0:182,0:6507,0:-585.442,-54.7875,0,-585.442,-54.7875,-585.442	1/1:94:0,94,0:0:0:94,0:3361,0:-302.705,-28.2968,0,-302.705,-28.2968,-302.705	1/2:70:0,41,29:0:0:41,29:1472,1009:-202.47,-82.3889,-70.0467,-120.434,0,-111.704	1/2:10:0,2,8:0:0:2,8:72,283:-29.2801,-23.404,-22.8019,-6.23466,0,-3.82642	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:11:0,1,10:0:0:1,10:36,359:-32.5808,-29.6433,-29.3423,-3.29724,0,-0.286945	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:160:0,158,1:0:0:158,1:5642,36:-507.539,-47.5627,0,-504.601,-44.6253,-504.3	1/2:93:0,25,66:0:0:25,66:885,2343:-263.058,-190.97,-183.445,-72.1469,0,-52.2789	1/2:48:0,21,27:0:0:21,27:737,958:-138.385,-78.4082,-72.0866,-60.329,0,-52.2012	1/1:3:0,3,0:0:0:3,0:93,0:-8.67673,-0.90309,0,-8.67673,-0.90309,-8.67673	1/2:113:0,62,51:0:0:62,51:2213,1802:-327.523,-147.108,-128.444,-180.769,0,-165.417	1/2:39:0,18,20:0:0:18,20:640,711:-109.662,-57.5059,-52.0873,-52.1512,0,-46.1306	1/2:109:0,39,70:0:0:39,70:1404,2439:-313.257,-198.693,-186.953,-114.919,0,-93.847	1/2:63:0,38,24:0:0:38,24:1364,843:-179.95,-68.6813,-57.2421,-111.34,0,-104.115	1/1:51:0,51,0:0:0:51,0:1832,0:-165.161,-15.3525,0,-165.161,-15.3525,-165.161	1/2:87:0,43,44:0:0:43,44:1544,1571:-254.386,-128.435,-115.491,-126.309,0,-113.063	1/2:98:0,48,49:0:0:48,49:1705,1693:-276.459,-137.524,-123.075,-138.924,0,-124.174	1/2:140:0,64,76:0:0:64,76:2285,2647:-401.662,-215.598,-196.332,-186.417,0,-163.538	1/1:85:0,84,0:0:0:84,0:2957,0:-266.078,-25.2865,0,-266.078,-25.2865,-266.078	1/1:93:0,93,0:0:0:93,0:3340,0:-300.687,-27.9958,0,-300.687,-27.9958,-300.687	1/1:67:0,66,0:0:0:66,0:2372,0:-213.525,-19.868,0,-213.525,-19.868,-213.525	1/2:20:0,3,17:0:0:3,17:108,599:-57.9343,-49.1209,-48.2178,-9.17208,0,-4.05457	1/2:101:0,42,59:0:0:42,59:1493,2095:-292.724,-171.06,-158.417,-122.019,0,-104.259	1/2:61:0,26,34:0:0:26,34:936,1189:-173.204,-96.8254,-88.9986,-76.4786,0,-66.2436	1/2:15:0,4,11:0:0:4,11:144,386:-43.5148,-31.7627,-30.5586,-12.1095,0,-8.79817	1/2:148:0,62,86:0:0:62,86:2224,3051:-430.277,-248.874,-230.21,-181.701,0,-155.812	1/2:28:0,18,10:0:0:18,10:644,351:-81.436,-28.9172,-23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chr08	8875934	.	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chr08	8968128	.	A	G	69848.4	PASS	AB=0.525586;ABP=36.235;AC=36;AF=0.191489;AN=188;AO=3104;CIGAR=1X;DP=16094;DPB=16094;DPRA=1.09259;EPP=6743.26;EPPR=28201.8;GTI=0;LEN=1;MEANALT=1.06522;MQM=51.9713;MQMR=59.9426;NS=94;NUMALT=1;ODDS=3.88114;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110345;QR=463006;RO=12986;RPL=1541;RPP=3.34889;RPPR=410.992;RPR=1563;RUN=1;SAF=1541;SAP=3.34889;SAR=1563;SRF=5712;SRP=410.992;SRR=7274;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:135:135,0:135:4836:0:0:0,-40.639,-435.394	0/0:275:275,0:275:9794:0:0:0,-82.7832,-881.392	0/1:232:100,132:100:3573:132:4705:-349.185,0,-251.924	0/0:493:493,0:493:17550:0:0:0,-148.408,-1578.94	0/1:112:60,52:60:2152:52:1845:-130.58,0,-160.161	0/1:114:69,45:69:2464:45:1583:-107.006,0,-187.697	0/0:189:189,0:189:6725:0:0:0,-56.8947,-605.328	0/0:284:284,0:284:10082:0:0:0,-85.4925,-907.318	0/0:263:263,0:263:9325:0:0:0,-79.1709,-839.144	0/0:183:183,0:183:6556:0:0:0,-55.0885,-590.104	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.747	0/0:195:195,0:195:6923:0:0:0,-58.7008,-623.096	0/0:160:160,0:160:5699:0:0:0,-48.1648,-513.028	0/0:140:140,0:140:5006:0:0:0,-42.1442,-450.686	0/0:143:143,0:143:5104:0:0:0,-43.0473,-459.505	0/0:113:112,0:112:4015:0:0:0,-33.7154,-361.164	0/0:110:110,0:110:3922:0:0:0,-33.1133,-352.945	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.441	0/0:154:154,0:154:5475:0:0:0,-46.3586,-492.873	0/0:302:302,0:302:10796:0:0:0,-90.9111,-971.546	0/1:102:34,68:34:1212:68:2419:-183.651,0,-78.6813	0/0:179:177,2:177:6347:2:72:0,-47.0476,-564.482	0/1:220:125,94:125:4417:94:3346:-233.584,0,-331.376	0/0:139:139,0:139:4910:0:0:0,-41.8432,-442.054	0/1:444:254,190:254:9070:190:6750:-461.438,0,-682.596	0/1:424:231,193:231:8212:193:6896:-489.05,0,-611.43	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.066	0/0:406:406,0:406:14478:0:0:0,-122.218,-1302.72	0/0:287:274,13:274:9770:13:464:0,-44.3433,-837.198	0/1:220:97,123:97:3446:123:4343:-320.409,0,-244.122	0/1:9:1,8:1:36:8:288:-22.7895,0,-0.889005	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:3:2,1:2:72:1:36:-2.64543,0,-5.93363	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.7986	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:322:322,0:322:11540:0:0:0,-96.9317,-1038.45	0/1:183:100,83:100:3553:83:2899:-204.267,0,-264.873	0/1:107:43,64:43:1513:64:2300:-174.129,0,-104.25	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:259:130,129:130:4640:129:4582:-331.164,0,-339.795	0/1:57:22,35:22:784:35:1240:-94.2594,0,-53.7252	0/1:270:114,155:114:4035:155:5500:-409.55,0,-281.523	0/1:130:51,79:51:1828:79:2825:-214.277,0,-125.667	0/0:130:130,0:130:4645:0:0:0,-39.1339,-418.203	0/1:193:97,96:97:3480:96:3440:-246.994,0,-255.309	0/1:174:85,89:85:3023:89:3196:-232.843,0,-219.922	0/1:220:102,118:102:3611:118:4175:-304.969,0,-258.967	0/0:157:156,1:156:5596:1:32:0,-44.0624,-500.554	0/0:260:259,1:259:9271:1:36:0,-74.6695,-830.759	0/0:283:283,0:283:10062:0:0:0,-85.1915,-905.51	0/1:10:5,5:5:180:5:171:-12.531,0,-13.5418	0/1:162:86,76:86:3059:76:2724:-193.822,0,-226.773	0/1:92:41,51:41:1464:51:1810:-131.022,0,-104.353	0/1:5:4,1:4:144:1:36:-2.04337,0,-11.8085	0/1:266:144,122:144:5138:122:4323:-305.846,0,-382.465	0/1:87:50,37:50:1768:37:1309:-91.0613,0,-133.212	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9794	0/1:31:20,11:20:716:11:396:-25.196,0,-55.4349	0/0:226:226,0:226:8065:0:0:0,-68.0328,-725.87	0/0:144:142,2:142:5068:2:72:0,-36.5589,-449.474	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:366:170,196:170:6039:196:6997:-507.034,0,-433.43	0/0:366:364,2:364:13031:2:72:0,-103.904,-1166.33	0/0:129:129,0:129:4601:0:0:0,-38.8329,-414.254	0/0:150:150,0:150:5302:0:0:0,-45.1545,-477.314	0/0:286:282,4:282:9992:4:140:0,-73.2611,-886.386	0/1:219:63,156:63:2248:156:5556:-428.792,0,-136.658	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.128	0/0:137:137,0:137:4896:0:0:0,-41.2411,-440.79	0/0:162:162,0:162:5783:0:0:0,-48.7669,-520.572	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:204:202,1:202:7135:1:36:0,-57.8155,-638.672	0/1:233:116,117:116:4152:117:4143:-299.947,0,-303.723	0/0:330:330,0:330:11753:0:0:0,-99.3399,-1057.64	0/0:333:333,0:333:11867:0:0:0,-100.243,-1067.89	0/0:165:165,0:165:5908:0:0:0,-49.6699,-531.763	0/0:333:327,6:327:11644:6:216:0,-80.4525,-1027.94	0/1:20:8,12:8:273:12:417:-31.478,0,-18.8796	0/0:173:172,1:172:6111:1:36:0,-48.4799,-546.498	0/1:147:67,80:67:2382:80:2810:-207.233,0,-170.385	0/0:318:318,0:318:11360:0:0:0,-95.7275,-1022.2	0/0:149:149,0:149:5329:0:0:0,-44.8535,-479.742	0/0:137:137,0:137:4903:0:0:0,-41.2411,-441.421	0/1:194:90,104:90:3236:104:3661:-270.106,0,-233.061	0/0:254:254,0:254:9099:0:0:0,-76.4616,-818.883	0/0:64:64,0:64:2295:0:0:0,-19.2659,-206.81	0/1:140:58,82:58:2076:82:2914:-219.023,0,-144.966	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/1:93:34,59:34:1220:59:2101:-160.465,0,-82.1101	0/1:158:69,89:69:2452:89:3177:-236.03,0,-173.37	0/1:147:28,119:28:1004:119:4256:-336.5,0,-46.4245	0/0:117:117,0:117:4148:0:0:0,-35.2205,-373.505	0/0:185:185,0:185:6593:0:0:0,-55.6905,-593.383
chr08	9287550	.	T	A	35454.6	PASS	AB=0.543438;ABP=65.0759;AC=36;AF=0.191489;AN=188;AO=2074;CIGAR=1X;DP=10004;DPB=10004;DPRA=1.2854;EPP=4506.64;EPPR=17203.2;GTI=1;LEN=1;MEANALT=1.08889;MQM=60;MQMR=59.9995;NS=94;NUMALT=1;ODDS=0.0492876;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73841;QR=281209;RO=7921;RPL=2074;RPP=4506.64;RPPR=17203.2;RPR=0;RUN=1;SAF=2074;SAP=4506.64;SAR=0;SRF=7921;SRP=17203.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:140:86,54:86:3069:54:1936:-132.372,0,-234.293	0/0:318:317,1:317:11291:1:36:0,-92.1293,-1012.48	0/1:49:14,35:14:500:35:1231:-96.3428,0,-30.5857	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:85:85,0:85:2969:0:0:0,-25.5875,-267.443	0/0:103:101,2:101:3601:2:72:0,-24.1694,-317.459	0/0:112:112,0:112:3957:0:0:0,-33.7154,-356.322	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:79:79,0:79:2780:0:0:0,-23.7814,-250.439	0/0:115:115,0:115:4039:0:0:0,-34.6184,-363.7	0/0:101:101,0:101:3586:0:0:0,-30.404,-322.948	0/0:109:109,0:109:3835:0:0:0,-32.8123,-345.35	0/0:94:94,0:94:3340:0:0:0,-28.2968,-300.817	0/0:77:77,0:77:2721:0:0:0,-23.1793,-245.134	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.904	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/0:41:41,0:41:1458:0:0:0,-12.3422,-131.515	0/0:253:253,0:253:9033:0:0:0,-76.1606,-812.949	0/0:156:156,0:156:5538:0:0:0,-46.9607,-498.549	0/1:189:41,148:41:1461:148:5262:-416.825,0,-74.8894	0/0:139:138,1:138:4886:1:36:0,-38.2449,-436.296	0/1:54:19,35:19:684:35:1256:-97.0897,0,-45.6347	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	0/1:282:118,164:118:4202:164:5829:-439.835,0,-293.472	0/1:345:202,143:202:7189:143:5088:-354.212,0,-543.214	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/0:362:362,0:362:12870:0:0:0,-108.973,-1158.12	0/0:122:118,4:118:4181:4:144:0,-23.412,-363.158	0/1:165:86,79:86:3060:79:2811:-203.561,0,-225.958	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:196:195,0:195:6868:0:0:0,-58.7008,-617.834	0/1:157:61,96:61:2160:96:3421:-260.842,0,-147.403	0/1:56:27,29:27:945:29:1044:-77.4171,0,-68.5043	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:98:55,43:55:1968:43:1516:-107.232,0,-147.894	0/1:40:17,23:17:608:23:824:-62.4421,0,-43.0108	0/1:137:53,84:53:1891:84:2993:-228.36,0,-129.226	0/1:57:33,24:33:1154:24:844:-59.1202,0,-87.0061	0/0:44:44,0:44:1554:0:0:0,-13.2453,-140.15	0/1:122:54,68:54:1918:68:2407:-180.161,0,-136.17	0/1:161:77,82:77:2743:82:2928:-215.532,0,-198.889	0/1:214:76,138:76:2698:138:4907:-377.364,0,-178.641	0/0:115:115,0:115:4115:0:0:0,-34.6184,-370.534	0/0:167:166,0:166:5919:0:0:0,-49.971,-532.461	0/0:102:102,0:102:3629:0:0:0,-30.7051,-326.815	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:177:73,104:73:2586:104:3704:-280.282,0,-179.707	0/1:86:51,35:51:1815:35:1256:-87.4567,0,-137.742	0/1:10:3,7:3:104:7:240:-18.9244,0,-6.69251	0/1:156:86,70:86:3066:70:2504:-178.652,0,-229.208	0/1:52:22,30:22:788:30:1076:-81.4993,0,-55.5912	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/0:102:101,0:101:3579:0:0:0,-30.404,-321.957	0/0:4:4,0:4:131:0:0:0,-1.20412,-12.1135	0/1:208:112,95:112:3995:95:3396:-243.222,0,-297.107	0/0:172:169,2:169:6014:2:72:0,-44.9393,-534.561	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:99:99,0:99:3515:0:0:0,-29.802,-316.562	0/0:185:184,1:184:6520:1:36:0,-52.0923,-583.286	0/1:149:53,96:53:1886:96:3408:-262.084,0,-125.164	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:20:19,1:19:676:1:32:0,-2.82129,-57.9687	0/0:103:103,0:103:3619:0:0:0,-31.0061,-325.919	0/1:92:45,47:45:1612:47:1677:-123.52,0,-117.675	0/0:471:470,1:470:16669:1:36:0,-138.187,-1496.28	0/0:280:280,0:280:9923:0:0:0,-84.2884,-893.017	0/0:81:81,0:81:2872:0:0:0,-24.3834,-258.716	0/0:99:96,3:96:3403:3:104:0,-20.0992,-296.781	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/0:147:147,0:147:5226:0:0:0,-44.2514,-470.478	0/1:157:71,86:71:2509:86:3076:-229.807,0,-178.8	0/0:187:187,0:187:6646:0:0:0,-56.2926,-598.221	0/0:72:72,0:72:2557:0:0:0,-21.6742,-230.379	0/0:82:82,0:82:2863:0:0:0,-24.6845,-257.906	0/1:32:10,22:10:347:22:788:-61.6118,0,-21.9307	0/0:131:131,0:131:4621:0:0:0,-39.4349,-416.054	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/1:68:34,34:34:1198:34:1203:-88.105,0,-87.654	0/0:90:89,0:89:3153:0:0:0,-26.7917,-283.636	0/1:62:28,34:28:999:34:1212:-90.7225,0,-71.5606	0/1:154:76,77:76:2679:77:2739:-200.336,0,-194.937	0/1:81:26,55:26:924:55:1949:-151.301,0,-59.0942	0/0:211:211,0:211:7478:0:0:0,-63.5173,-673.067	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315
chr08	9356619	.	T	A,G	168746	PASS	AB=0.45463,0.54537;ABP=60.3481,60.3481;AC=152,36;AF=0.808511,0.191489;AN=188;AO=6059,1766;CIGAR=1X,1X;DP=7827;DPB=7827;DPRA=0,1.25588;EPP=13160,3837.83;EPPR=5.18177;GTI=2;LEN=1,1;MEANALT=1.5,2;MQM=59.9107,58.9626;MQMR=60;NS=94;NUMALT=2;ODDS=1.12899;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=214635,62729;QR=36;RO=1;RPL=3,3;RPP=13133.9,3811.82;RPPR=5.18177;RPR=6056,1763;RUN=1,1;SAF=3,3;SAP=13133.9,3811.82;SAR=6056,1763;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,59,0:0:0:59,0:2077,0:-187.19,-17.7608,0,-187.19,-17.7608,-187.19	1/1:108:0,107,0:0:0:107,0:3798,0:-341.806,-32.2102,0,-341.806,-32.2102,-341.806	1/2:27:0,12,15:0:0:12,15:424,513:-76.5121,-41.9762,-38.3638,-34.8841,0,-30.3686	1/1:257:0,257,0:0:0:257,0:9137,0:-822.3,-77.3647,0,-822.3,-77.3647,-822.3	1/2:87:0,33,54:0:0:33,54:1160,1899:-249.31,-154.891,-144.957,-94.7699,0,-78.5143	1/2:92:0,49,43:0:0:49,43:1741,1527:-266.56,-124.694,-109.943,-142.221,0,-129.277	1/1:98:0,97,1:0:0:97,1:3438,36:-309.274,-29.1999,0,-306.336,-25.9027,-306.035	1/1:142:0,142,0:0:0:142,0:4961,0:-446.641,-42.7463,0,-446.641,-42.7463,-446.641	1/1:58:0,58,0:0:0:58,0:2046,0:-184.382,-17.4597,0,-184.382,-17.4597,-184.382	1/1:116:0,116,0:0:0:116,0:4106,0:-369.726,-34.9195,0,-369.726,-34.9195,-369.726	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:47:0,47,0:0:0:47,0:1676,0:-150.332,-14.1484,0,-150.332,-14.1484,-150.332	1/1:41:0,41,0:0:0:41,0:1444,0:-130.256,-12.3422,0,-130.256,-12.3422,-130.256	1/1:40:0,40,0:0:0:40,0:1422,0:-128.269,-12.0412,0,-128.269,-12.0412,-128.269	1/1:39:0,39,0:0:0:39,0:1404,0:-126.659,-11.7402,0,-126.659,-11.7402,-126.659	1/1:35:0,35,0:0:0:35,0:1228,0:-110.776,-10.5361,0,-110.776,-10.5361,-110.776	1/1:23:0,23,0:0:0:23,0:812,0:-73.4009,-6.92369,0,-73.4009,-6.92369,-73.4009	1/1:56:0,56,0:0:0:56,0:1959,0:-176.583,-16.8577,0,-176.583,-16.8577,-176.583	1/1:19:0,19,0:0:0:19,0:636,0:-57.5536,-5.71957,0,-57.5536,-5.71957,-57.5536	1/1:200:0,199,1:0:0:199,1:7056,36:-634.746,-59.905,0,-631.809,-56.6077,-631.508	1/1:127:0,127,0:0:0:127,0:4472,0:-402.579,-38.2308,0,-402.579,-38.2308,-402.579	1/2:136:0,39,97:0:0:39,97:1396,3455:-395.592,-281.76,-270.02,-114.189,0,-84.989	1/1:81:0,81,0:0:0:81,0:2868,0:-258.357,-24.3834,0,-258.357,-24.3834,-258.357	1/2:121:0,52,69:0:0:52,69:1846,2448:-350.022,-199.719,-184.065,-150.657,0,-129.886	1/1:60:0,60,0:0:0:60,0:2139,0:-192.778,-18.0618,0,-192.778,-18.0618,-192.778	1/2:374:0,170,204:0:0:170,204:5999,7265:-1080.62,-592.254,-541.079,-488.722,0,-427.312	1/2:173:0,86,87:0:0:86,87:3061,3107:-502.329,-252.855,-226.966,-249.83,0,-223.64	1/1:29:0,29,0:0:0:29,0:1025,0:-92.5616,-8.72987,0,-92.5616,-8.72987,-92.5616	1/1:270:1,269,0:1:36:269,0:9485,0:-849.94,-77.6798,0,-850.241,-80.9771,-853.178	1/1:208:0,205,3:0:0:205,3:7167,108:-643.881,-61.7112,0,-635.069,-52.5391,-634.166	1/2:168:0,72,96:0:0:72,96:2568,3436:-489.797,-280.458,-258.784,-209.696,0,-180.797	1/2:4:0,1,3:0:0:1,3:36,104:-11.7382,-8.79748,-8.49645,-3.29724,0,-2.39415	1/1:14:0,14,0:0:0:14,0:495,0:-44.883,-4.21442,0,-44.883,-4.21442,-44.883	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:2:0,2,0:0:0:2,0:57,0:-5.41331,-0.60206,0,-5.41331,-0.60206,-5.41331	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:134:0,134,0:0:0:134,0:4753,0:-427.876,-40.338,0,-427.876,-40.338,-427.876	1/2:181:0,111,70:0:0:111,70:3943,2475:-523.048,-201.758,-168.344,-321.643,0,-300.571	1/2:23:0,12,11:0:0:12,11:428,396:-67.5536,-32.6654,-29.053,-35.2464,0,-31.9351	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/2:158:0,76,82:0:0:76,82:2716,2910:-458.87,-237.421,-214.542,-221.806,0,-197.121	1/2:21:0,6,15:0:0:6,15:207,534:-60.6677,-43.8549,-42.0487,-17.1607,0,-12.6453	1/2:162:0,77,85:0:0:77,85:2741,3035:-471.09,-247.694,-224.515,-223.752,0,-198.165	1/2:39:0,21,18:0:0:21,18:748,640:-113.474,-52.5061,-46.1844,-61.3237,0,-55.9051	1/1:33:0,32,1:0:0:32,1:1109,36:-99.7554,-9.63296,0,-96.8175,-6.33572,-96.5165	1/2:142:0,57,85:0:0:57,85:2032,3001:-410.317,-244.678,-227.52,-165.994,0,-140.406	1/2:113:0,54,59:0:0:54,59:1936,2103:-329.55,-171.646,-155.391,-158.261,0,-140.5	1/2:202:0,93,109:0:0:93,109:3302,3883:-585.813,-316.767,-288.771,-269.401,0,-236.589	1/1:112:0,112,0:0:0:112,0:3962,0:-356.769,-33.7154,0,-356.769,-33.7154,-356.769	1/1:120:0,120,0:0:0:120,0:4267,0:-384.206,-36.1236,0,-384.206,-36.1236,-384.206	1/1:128:0,128,0:0:0:128,0:4526,0:-407.496,-38.5318,0,-407.496,-38.5318,-407.496	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:45:0,20,25:0:0:20,25:701,900:-130.824,-73.7875,-67.7669,-57.3911,0,-49.8654	1/2:64:0,36,28:0:0:36,28:1275,1004:-186.085,-82.2258,-71.3887,-104.215,0,-95.7864	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.0469,0,-14.4449	1/2:77:0,28,49:0:0:28,49:991,1732:-222.094,-141.379,-132.95,-81.0691,0,-66.3187	1/2:86:0,34,52:0:0:34,52:1201,1843:-247.594,-149.788,-139.553,-98.1586,0,-82.5051	1/1:5:0,5,0:0:0: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chr08	9356636	.	GCAAT	GCAAC,ACAAC	175033	PASS	AB=0.447281,0.547912;ABP=83.373,69.388;AC=152,36;AF=0.808511,0.191489;AN=188;AO=6213,1841;CIGAR=4M1X,1X3M1X;DP=8095;DPB=8094.8;DPRA=0,1.19187;EPP=13433.6,3992.01;EPPR=9.52472;GTI=2;LEN=1,5;MEANALT=1.8617,2.45455;MQM=59.9326,58.9326;MQMR=60;NS=94;NUMALT=2;ODDS=0.288912;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=222190,64858;QR=97;RO=3;RPL=6206,1840;RPP=13433.6,3992.01;RPPR=9.52472;RPR=7,1;RUN=1,1;SAF=0,0;SAP=13494.4,4000.69;SAR=6213,1841;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:60:0,60,0:0:0:60,0:2152,0:-193.947,-18.0618,0,-193.947,-18.0618,-193.947	1/1:113:0,113,0:0:0:113,0:4064,0:-365.945,-34.0164,0,-365.945,-34.0164,-365.945	1/2:28:0,13,15:0:0:13,15:468,537:-82.3357,-44.1483,-40.235,-38.5463,0,-34.0308	1/1:267:0,265,0:0:0:265,0:9475,0:-852.428,-79.773,0,-852.428,-79.773,-852.428	1/2:90:0,34,56:0:0:34,56:1216,1979:-260.632,-161.476,-151.241,-99.5115,0,-82.6539	1/2:92:0,49,41:0:0:49,41:1752,1451:-261,-118.143,-103.393,-142.89,0,-130.548	1/1:97:0,96,0:0:0:96,0:3440,0:-309.562,-28.8989,0,-309.562,-28.8989,-309.562	1/1:147:0,147,0:0:0:147,0:5253,0:-472.901,-44.2514,0,-472.901,-44.2514,-472.901	1/1:62:0,62,0:0:0:62,0:2204,0:-198.596,-18.6639,0,-198.596,-18.6639,-198.596	1/1:120:0,120,0:0:0:120,0:4277,0:-385.108,-36.1236,0,-385.108,-36.1236,-385.108	1/1:18:0,18,0:0:0:18,0:639,0:-57.8382,-5.41854,0,-57.8382,-5.41854,-57.8382	1/1:49:0,49,0:0:0:49,0:1764,0:-158.249,-14.7505,0,-158.249,-14.7505,-158.249	1/1:45:0,44,0:0:0:44,0:1580,0:-142.221,-13.2453,0,-142.221,-13.2453,-142.221	1/1:38:0,37,0:0:0:37,0:1313,0:-118.104,-11.1381,0,-118.104,-11.1381,-118.104	1/1:39:0,39,0:0:0:39,0:1400,0:-126.299,-11.7402,0,-126.299,-11.7402,-126.299	1/1:37:0,35,0:0:0:35,0:1256,0:-113.053,-10.5361,0,-113.053,-10.5361,-113.053	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/1:56:0,55,0:0:0:55,0:1958,0:-176.134,-16.5567,0,-176.134,-16.5567,-176.134	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/1:206:0,205,0:0:0:205,0:7348,0:-661.057,-61.7112,0,-661.057,-61.7112,-661.057	1/1:136:0,136,0:0:0:136,0:4864,0:-437.675,-40.9401,0,-437.675,-40.9401,-437.675	1/2:139:0,36,103:0:0:36,103:1284,3637:-401.138,-296.467,-285.63,-105.026,0,-74.0202	1/1:82:0,81,0:0:0:81,0:2908,0:-261.595,-24.3834,0,-261.595,-24.3834,-261.595	1/2:122:0,51,69:0:0:51,69:1820,2413:-344.481,-196.296,-180.943,-148.217,0,-127.446	1/1:61:0,61,0:0:0:61,0:2184,0:-196.826,-18.3628,0,-196.826,-18.3628,-196.826	1/2:386:0,173,211:0:0:173,211:6216,7438:-1112.42,-605.431,-553.353,-507.048,0,-443.531	1/2:178:0,88,88:0:0:88,88:3156,3135:-512.485,-255.068,-228.578,-257.414,0,-230.924	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1529,-9.0309,0,-97.1529,-9.0309,-97.1529	1/1:281:1,280,0:1:30:280,0:10008,0:-897.376,-81.5899,0,-897.677,-84.2884,-900.075	1/1:219:0,213,4:0:0:213,4:7628,133:-686.243,-64.1194,0,-675.484,-53.3158,-674.28	1/2:178:0,78,100:0:0:78,100:2783,3518:-513.511,-286.658,-263.177,-227.208,0,-197.105	1/2:4:0,1,3:0:0:1,3:36,106:-11.9225,-8.9834,-8.68237,-3.29724,0,-2.39415	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:5:0,5,0:0:0:5,0:176,0:-16.1849,-1.50515,0,-16.1849,-1.50515,-16.1849	1/1:136:0,135,0:0:0:135,0:4831,0:-434.684,-40.6391,0,-434.684,-40.6391,-434.684	1/2:184:0,109,75:0:0:109,75:3901,2626:-531.866,-213.75,-180.937,-318.469,0,-295.892	1/2:24:0,12,12:0:0:12,12:432,429:-70.5805,-35.3302,-31.7178,-35.6088,0,-31.9965	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:164:0,80,83:0:0:80,83:2850,2912:-469.242,-236.94,-212.858,-232.295,0,-207.31	1/2:22:0,7,15:0:0:7,15:252,540:-64.9555,-44.3935,-42.2863,-20.9217,0,-16.4063	1/2:169:0,80,89:0:0:80,89:2859,3138:-488.873,-255.763,-231.68,-233.465,0,-206.673	1/2:41:1,22,18:1:36:22,18:792,631:-112.722,-48.395,-44.7103,-61.6858,0,-59.2046	1/1:37:0,36,1:0:0:36,1:1280,36:-115.144,-10.8371,0,-112.206,-7.53984,-111.905	1/2:154:0,62,91:0:0:62,91:2219,3187:-440.304,-259.348,-240.684,-181.058,0,-153.664	1/2:118:0,56,61:0:0:56,61:2016,2151:-339.718,-175.218,-158.361,-164.603,0,-146.241	1/2:206:0,92,114:0:0:92,114:3238,4021:-591.281,-327.689,-299.994,-263.945,0,-229.627	1/1:114:0,113,0:0:0:113,0:4000,0:-359.831,-34.0164,0,-359.831,-34.0164,-359.831	1/1:123:0,122,0:0:0:122,0:4376,0:-393.73,-36.7257,0,-393.73,-36.7257,-393.73	1/1:131:1,130,0:1:31:130,0:4658,0:-416.265,-36.3355,0,-416.566,-39.1339,-419.054	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:47:0,21,26:0:0:21,26:752,923:-136.882,-75.5536,-69.2319,-61.6846,0,-53.8578	1/2:65:0,35,29:0:0:35,29:1256,1016:-185.095,-82.6397,-72.1037,-102.449,0,-93.7196	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.0469,0,-14.4449	1/2:80:0,31,49:0:0:31,49:1095,1740:-231.27,-142.103,-132.771,-89.521,0,-74.7705	1/2:91:0,35,56:0:0:35,56:1260,1926:-259.21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chr08	9367358	.	C	T	124368	PASS	AB=0.475021;ABP=15.8111;AC=150;AF=0.815217;AN=184;AO=5710;CIGAR=1X;DP=6967;DPB=6967;DPRA=12.7491;EPP=12402.1;EPPR=2728.21;GTI=2;LEN=1;MEANALT=1.02198;MQM=59.982;MQMR=59.9578;NS=92;NUMALT=1;ODDS=0.213911;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204028;QR=44811;RO=1255;RPL=0;RPP=12402.1;RPPR=2728.21;RPR=5710;RUN=1;SAF=5710;SAP=12402.1;SAR=0;SRF=1255;SRP=2728.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:86:0,86:0:0:86:3064:-275.99,-25.8886,0	0/1:95:36,59:36:1292:59:2120:-162.471,0,-87.9859	1/1:246:0,246:0:0:246:8777:-789.921,-74.0534,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:6:1,4:1:36:4:140:-11.0816,0,-1.7333	1/1:99:0,99:0:0:99:3532:-318.09,-29.802,0	1/1:69:0,69:0:0:69:2465:-222.101,-20.7711,0	1/1:90:0,90:0:0:90:3197:-287.908,-27.0927,0	1/1:117:0,117:0:0:117:4194:-377.641,-35.2205,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:89:0,89:0:0:89:3166:-285.166,-26.7917,0	1/1:105:0,105:0:0:105:3768:-339.318,-31.6082,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:84:0,84:0:0:84:3009:-271.04,-25.2865,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:147:0,147:0:0:147:5261:-473.625,-44.2514,0	1/1:125:1,124:1:36:124:4444:-396.532,-34.0305,0	0/1:15:13,2:13:464:2:72:-2.32127,0,-37.5821	1/1:95:0,95:0:0:95:3385:-304.865,-28.5979,0	0/1:29:17,12:17:612:12:420:-29.4042,0,-46.6836	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:214:113,101:113:4039:101:3612:-260.866,0,-299.277	0/1:214:97,117:97:3484:117:4188:-312.681,0,-249.35	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:216:0,215:0:0:215:7669:-690.037,-64.7215,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	0/1:108:58,50:58:2080:50:1796:-129.411,0,-154.642	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:185:0,185:0:0:185:6623:-596.147,-55.6906,0	0/1:77:42,35:42:1483:35:1256:-90.166,0,-110.584	0/1:38:19,19:19:671:19:684:-50.4512,0,-49.2767	.:.:.:.:.:.:.:.	0/1:165:90,75:90:3212:75:2696:-193.214,0,-239.634	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:77:42,35:42:1491:35:1252:-89.8058,0,-111.304	0/1:45:16,29:16:572:29:1040:-80.368,0,-38.2671	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	0/1:63:34,29:34:1208:29:1025:-73.5958,0,-90.0612	0/1:30:15,15:15:536:15:525:-38.548,0,-39.5439	0/1:141:75,66:75:2672:66:2329:-167.422,0,-198.281	1/1:71:0,71:0:0:71:2528:-227.769,-21.3731,0	1/1:115:0,115:0:0:115:4128:-371.703,-34.6185,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:52:30,22:30:1076:22:784:-55.2304,0,-81.4993	0/1:60:23,37:23:828:37:1312:-100.319,0,-56.7823	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:86:43,43:43:1528:43:1540:-113.004,0,-111.925	0/1:24:9,15:9:324:15:531:-40.8972,0,-22.2811	.:.:.:.:.:.:.:.	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:119:0,119:0:0:119:4257:-383.308,-35.8226,0	1/1:66:2,64:2:72:64:2274:-198.085,-13.0313,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:200:113,87:113:4040:87:3120:-220.82,0,-303.582	1/1:146:1,145:1:36:145:5173:-462.112,-40.3521,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:55:0,55:0:0:55:1959:-176.586,-16.5567,0	1/1:169:4,165:4:144:165:5864:-514.369,-37.5605,0	0/1:101:75,26:75:2661:26:928:-53.4337,0,-208.841	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	1/1:49:0,49:0:0:49:1746:-157.424,-14.7505,0	1/1:56:0,56:0:0:56:2003:-180.543,-16.8577,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:91:0,91:0:0:91:3230:-290.921,-27.3937,0	0/1:112:49,63:49:1743:63:2264:-170.307,0,-123.438	1/1:141:0,141:0:0:141:5024:-452.295,-42.4452,0	1/1:140:0,140:0:0:140:5002:-450.328,-42.1442,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	0/1:18:8,10:8:280:10:360:-27.3258,0,-20.1208	1/1:118:1,117:1:36:117:4178:-372.604,-31.9233,0	0/1:105:58,47:58:2068:47:1688:-120.591,0,-154.783	1/1:181:1,180:1:36:180:6420:-574.288,-50.8882,0	1/1:42:0,42:0:0:42:1499:-135.203,-12.6433,0	1/1:67:0,67:0:0:67:2398:-216.077,-20.169,0	0/1:37:23,14:23:824:14:504:-34.56,0,-63.3452	1/1:147:0,147:0:0:147:5259:-473.446,-44.2514,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:61:31,30:31:1112:30:1067:-77.9784,0,-82.0285	1/1:69:0,69:0:0:69:2436:-219.494,-20.7711,0	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	0/1:53:26,27:26:923:27:964:-71.1176,0,-67.4322	0/1:80:53,27:53:1896:27:968:-63.355,0,-146.836	1/1:133:0,133:0:0:133:4738:-426.58,-40.037,0	1/1:133:0,133:0:0:133:4764:-428.917,-40.037,0
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chr08	9369544	.	C	G	36735.9	PASS	AB=0.479063;ABP=29.0158;AC=36;AF=0.191489;AN=188;AO=3319;CIGAR=1X;DP=18394;DPB=18394;DPRA=1.18819;EPP=7201.44;EPPR=32692.4;GTI=0;LEN=1;MEANALT=1.06122;MQM=26.2058;MQMR=31.701;NS=94;NUMALT=1;ODDS=2.24894;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118005;QR=536953;RO=15066;RPL=1555;RPP=31.5888;RPPR=114.625;RPR=1764;RUN=1;SAF=1554;SAP=32.1384;SAR=1765;SRF=7090;SRP=116.152;SRR=7976;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:93:93,0:93:3312:0:0:0,-27.9958,-178.511	0/0:361:361,0:361:12878:0:0:0,-108.672,-684.633	0/1:277:148,129:148:5296:129:4610:-232.237,0,-209.121	0/0:344:344,0:344:12218:0:0:0,-103.554,-889.306	0/1:166:83,83:83:2953:83:2924:-121.187,0,-145.012	0/1:112:65,47:65:2324:47:1672:-76.7388,0,-96.3527	0/0:249:248,0:248:8846:0:0:0,-74.6554,-664.851	0/0:350:349,1:349:12412:1:36:0,-103.765,-659.484	0/0:202:202,0:202:7231:0:0:0,-60.8081,-382.952	0/0:310:310,0:310:11070:0:0:0,-93.3193,-779.791	0/0:121:120,0:120:4296:0:0:0,-36.1236,-277.402	0/0:174:174,0:174:6198:0:0:0,-52.3792,-334.17	0/0:172:172,0:172:6148:0:0:0,-51.7772,-329.022	0/0:175:175,0:175:6230:0:0:0,-52.6802,-409.923	0/0:130:130,0:130:4637:0:0:0,-39.1339,-336.883	0/0:175:175,0:175:6219:0:0:0,-52.6802,-383.54	0/0:122:122,0:122:4320:0:0:0,-36.7257,-231.476	0/0:95:95,0:95:3388:0:0:0,-28.5978,-184.496	0/0:71:70,0:70:2512:0:0:0,-21.0721,-133.562	0/0:377:377,0:377:13396:0:0:0,-113.488,-990.897	0/0:268:266,2:266:9448:2:72:0,-75.1608,-643.784	0/1:185:64,121:64:2287:121:4304:-188.238,0,-71.1267	0/0:245:245,0:245:8732:0:0:0,-73.7523,-643.861	0/1:255:145,110:145:5125:110:3865:-171.07,0,-277.608	0/0:189:189,0:189:6710:0:0:0,-56.8947,-432.774	0/1:572:312,260:312:11097:260:9230:-396.472,0,-410.167	0/1:490:267,223:267:9539:223:7935:-271.717,0,-480.565	0/0:49:49,0:49:1752:0:0:0,-14.7505,-118.65	0/0:505:502,2:502:17928:2:72:0,-148.847,-957.882	0/0:306:286,20:286:10160:20:716:0,-42.2243,-670.202	0/1:262:149,113:149:5313:113:4018:-148.026,0,-316.851	0/1:12:3,9:3:108:9:320:-17.9244,0,-1.85195	0/0:32:32,0:32:1140:0:0:0,-9.63296,-64.1668	0/1:15:9,6:9:324:6:208:-7.92107,0,-11.0057	0/0:17:17,0:17:608:0:0:0,-5.11751,-31.4529	0/0:41:40,1:40:1420:1:36:0,-10.7464,-73.025	0/0:370:370,0:370:13206:0:0:0,-111.381,-712.266	0/1:304:158,146:158:5604:146:5201:-240.631,0,-287.767	0/1:110:61,49:61:2157:49:1748:-64.2782,0,-80.6499	0/0:6:6,0:6:216:0:0:0,-1.80618,-15.482	0/1:233:131,102:131:4696:102:3617:-145.598,0,-239.428	0/1:81:47,34:47:1671:34:1216:-41.9551,0,-81.8051	0/1:244:116,128:116:4138:128:4565:-182.965,0,-228.637	0/1:148:66,82:66:2325:82:2927:-117.044,0,-117.089	0/0:130:130,0:130:4647:0:0:0,-39.1339,-325.636	0/1:156:77,79:77:2756:79:2824:-86.8171,0,-103.083	0/1:288:163,125:163:5823:125:4464:-199.525,0,-228.866	0/1:310:156,154:156:5570:154:5469:-244.905,0,-308.094	0/0:228:228,0:228:8117:0:0:0,-68.6348,-600.512	0/0:268:268,0:268:9577:0:0:0,-80.676,-698.938	0/0:211:211,0:211:7560:0:0:0,-63.5173,-391.256	0/1:23:8,15:8:284:15:524:-27.4849,0,-11.6719	0/1:196:103,93:103:3688:93:3315:-156.357,0,-138.328	0/1:83:48,35:48:1716:35:1252:-42.7979,0,-69.8894	0/1:34:23,11:23:820:11:396:-7.53507,0,-35.4768	0/1:304:146,156:146:5189:156:5495:-230.704,0,-289.131	0/1:89:53,36:53:1891:36:1280:-25.3116,0,-106.123	0/0:18:18,0:18:644:0:0:0,-5.41854,-34.2202	0/1:32:18,14:18:648:14:500:-18.776,0,-26.6458	0/0:181:180,1:180:6433:1:36:0,-52.9898,-408.86	0/0:185:184,1:184:6540:1:36:0,-54.1939,-461.412	0/0:17:17,0:17:604:0:0:0,-5.11751,-38.5511	0/1:310:176,134:176:6277:134:4812:-195.765,0,-251.235	0/0:345:345,0:345:12257:0:0:0,-103.855,-873.657	0/0:207:207,0:207:7385:0:0:0,-62.3132,-478.919	0/0:207:207,0:207:7350:0:0:0,-62.3132,-535.67	0/0:350:343,7:343:12236:7:252:0,-90.0119,-868.205	0/1:288:102,186:102:3634:186:6624:-235.217,0,-181.495	0/0:106:106,0:106:3783:0:0:0,-31.9092,-229.365	0/0:178:177,1:177:6327:1:36:0,-51.9876,-335.163	0/0:130:129,0:129:4580:0:0:0,-38.8329,-249.245	0/0:69:69,0:69:2475:0:0:0,-20.7711,-179.705	0/0:181:181,0:181:6459:0:0:0,-54.4864,-354.678	0/1:201:99,102:99:3513:102:3634:-169.636,0,-125.688	0/0:337:337,0:337:11971:0:0:0,-101.447,-767.851	0/0:284:283,0:283:10119:0:0:0,-85.1915,-750.231	0/0:235:235,0:235:8412:0:0:0,-70.742,-439.297	0/0:305:299,6:299:10662:6:216:0,-74.6495,-553.283	0/1:23:18,5:18:648:5:180:-5.9438,0,-27.3185	0/0:253:250,3:250:8927:3:104:0,-70.6622,-640.583	0/1:249:150,99:150:5354:99:3496:-160.571,0,-213.777	0/0:363:362,1:362:12931:1:36:0,-107.091,-950.449	0/0:154:154,0:154:5485:0:0:0,-46.3586,-403.084	0/0:158:158,0:158:5627:0:0:0,-47.5627,-413.661	0/1:132:69,63:69:2455:63:2230:-102.033,0,-146.511	0/0:260:259,1:259:9221:1:36:0,-75.365,-646.405	0/0:59:59,0:59:2112:0:0:0,-17.7608,-115.474	0/1:157:81,76:81:2892:76:2705:-120.64,0,-104.56	0/0:130:130,0:130:4621:0:0:0,-39.1339,-254.393	0/1:114:72,42:72:2549:42:1491:-36.8935,0,-123.511	0/1:245:116,129:116:4138:129:4585:-127.166,0,-188.971	0/1:130:54,76:54:1919:76:2685:-107.878,0,-94.337	0/0:271:270,0:270:9562:0:0:0,-81.2781,-701.972	0/0:195:195,0:195:6977:0:0:0,-58.7008,-489.107
chr08	9369573	.	C	A	111421	PASS	AB=0.520663;ABP=16.2021;AC=151;AF=0.803191;AN=188;AO=8066;CIGAR=1X;DP=9814;DPB=9814;DPRA=0;EPP=17518.1;EPPR=3792.23;GTI=3;LEN=1;MEANALT=1.03191;MQM=38.5497;MQMR=35.6986;NS=94;NUMALT=1;ODDS=1.96597;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=289137;QR=62368;RO=1745;RPL=8066;RPP=17518.1;RPPR=3792.23;RPR=0;RUN=1;SAF=0;SAP=17518.1;SAR=8066;SRF=0;SRP=3792.23;SRR=1745;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1116:-58.5777,-9.33193,0	1/1:277:0,277:0:0:277:9939:-521.379,-83.3853,0	0/1:156:76,80:76:2728:80:2864:-112.973,0,-193.338	1/1:208:0,208:0:0:208:7442:-578.169,-62.6142,0	0/1:104:49,55:49:1743:55:1976:-104.041,0,-97.6004	0/1:71:25,46:25:892:46:1648:-71.5,0,-56.8804	1/1:152:0,152:0:0:152:5456:-443.436,-45.7566,0	1/1:211:0,211:0:0:211:7533:-392.778,-63.5173,0	1/1:105:0,104:0:0:104:3706:-189.753,-31.3071,0	1/1:224:0,224:0:0:224:8023:-582.104,-67.4307,0	1/1:40:0,40:0:0:40:1440:-94.7512,-12.0412,0	1/1:48:0,48:0:0:48:1715:-88.6621,-14.4494,0	1/1:64:0,64:0:0:64:2304:-118.74,-19.2659,0	1/1:54:0,54:0:0:54:1932:-154.541,-16.2556,0	1/1:62:0,62:0:0:62:2228:-180.487,-18.6639,0	1/1:67:0,67:0:0:67:2397:-162.202,-20.169,0	1/1:69:0,69:0:0:69:2471:-130.002,-20.7711,0	1/1:47:0,47:0:0:47:1680:-90.83,-14.1484,0	1/1:29:0,29:0:0:29:1044:-52.6565,-8.72987,0	1/1:231:0,230:0:0:230:8233:-651.098,-69.2369,0	1/1:123:2,121:2:72:121:4348:-336.873,-31.5114,0	0/1:97:59,38:59:2109:38:1364:-46.4137,0,-125.074	1/1:124:0,124:0:0:124:4451:-362.51,-37.3277,0	0/1:161:77,84:77:2752:84:2994:-177.232,0,-154.666	1/1:73:1,72:1:32:72:2588:-184.509,-19.2514,0	0/1:349:173,176:173:6183:176:6320:-211.871,0,-340.599	0/1:214:96,118:96:3439:118:4248:-251.551,0,-180.387	1/1:21:0,21:0:0:21:756:-59.7359,-6.32163,0	1/1:300:0,300:0:0:300:10772:-562.565,-90.309,0	1/1:185:18,167:18:648:167:5984:-424.021,-8.37549,0	0/1:154:64,90:64:2280:90:3240:-213.752,0,-115.562	0/0:9:8,1:8:288:1:36:0,-1.41133,-18.9803	1/1:3:0,3:0:0:3:108:-3.63422,-0.90309,0	0/1:7:2,5:2:68:5:180:-5.88802,0,-4.3505	1/1:6:0,6:0:0:6:216:-9.83621,-1.80618,0	1/1:2:0,2:0:0:2:72:-4.32984,-0.60206,0	1/1:170:0,170:0:0:170:6091:-323.671,-51.1751,0	0/1:206:101,105:101:3624:105:3771:-211.409,0,-205.386	0/1:41:17,24:17:603:24:860:-29.0096,0,-39.1253	1/1:6:0,6:0:0:6:216:-15.482,-1.80618,0	0/1:119:62,57:62:2196:57:2048:-118.358,0,-128.287	0/1:28:13,15:13:468:15:536:-31.7988,0,-26.3039	0/1:140:66,74:66:2368:74:2652:-172.637,0,-129.407	0/1:78:42,36:42:1504:36:1292:-74.0773,0,-84.5534	1/1:79:0,79:0:0:79:2822:-211.349,-23.7814,0	0/1:41:18,23:18:648:23:813:-31.8703,0,-34.6712	0/1:143:64,79:64:2287:79:2815:-109.595,0,-154.971	0/1:214:100,114:100:3558:114:4080:-240.068,0,-193.112	1/1:134:0,134:0:0:134:4816:-383.077,-40.338,0	1/1:184:0,184:0:0:184:6597:-506.914,-55.3895,0	1/1:130:0,130:0:0:130:4659:-229.886,-39.1339,0	0/1:15:13,2:13:468:2:72:-0.135952,0,-28.5277	0/1:113:53,60:53:1900:60:2156:-79.0774,0,-124.044	0/1:29:15,14:15:540:14:504:-19.3219,0,-28.3189	0/1:5:1,4:1:36:4:144:-6.92665,0,-2.08408	0/1:181:94,87:94:3356:87:3108:-197.036,0,-188.333	0/1:16:3,13:3:108:13:468:-33.4672,0,-3.1558	1/1:5:0,5:0:0:5:180:-8.67787,-1.50515,0	0/1:17:7,10:7:252:10:352:-14.6727,0,-13.3079	1/1:58:0,58:0:0:58:2080:-156.936,-17.4597,0	1/1:76:0,76:0:0:76:2732:-209.517,-22.8783,0	1/1:5:0,5:0:0:5:180:-10.2031,-1.50515,0	0/1:199:88,111:88:3160:111:3979:-156.812,0,-164.744	1/1:219:0,219:0:0:219:7865:-587.306,-65.9256,0	1/1:130:0,130:0:0:130:4664:-317.044,-39.1339,0	1/1:134:0,134:0:0:134:4795:-369.311,-40.338,0	1/1:227:4,223:4:144:223:8008:-595.791,-57.5936,0	0/1:108:59,49:59:2116:49:1760:-112.264,0,-119.729	1/1:14:0,14:0:0:14:504:-35.2644,-4.21442,0	1/1:109:0,109:0:0:109:3920:-204.644,-32.8123,0	1/1:65:0,65:0:0:65:2328:-123.503,-19.567,0	1/1:37:0,37:0:0:37:1324:-109.742,-11.1381,0	1/1:54:0,54:0:0:54:1922:-108.609,-16.2556,0	0/1:84:50,34:50:1784:34:1202:-33.5405,0,-128.837	1/1:151:0,151:0:0:151:5395:-381.939,-45.4555,0	1/1:200:0,200:0:0:200:7180:-551.789,-60.206,0	1/1:108:0,108:0:0:108:3856:-191.081,-32.5112,0	1/1:198:5,193:5:180:193:6899:-346.835,-43.845,0	0/1:8:3,5:3:108:5:180:-6.26963,0,-7.66693	1/1:170:1,168:1:36:168:6040:-470.761,-48.1813,0	0/1:151:63,88:63:2230:88:3164:-122.246,0,-137.958	1/1:234:0,234:0:0:234:8374:-663.499,-70.441,0	1/1:89:0,89:0:0:89:3191:-255.088,-26.7917,0	1/1:78:0,78:0:0:78:2795:-225.872,-23.4803,0	0/1:95:49,46:49:1760:46:1656:-105.636,0,-99.2018	1/1:130:1,129:1:36:129:4628:-357.146,-36.2311,0	1/1:35:0,35:0:0:35:1260:-68.3832,-10.5361,0	0/1:75:36,39:36:1284:39:1400:-48.7321,0,-88.3972	1/1:57:0,57:0:0:57:2044:-113.369,-17.1587,0	0/1:33:11,22:11:396:22:792:-43.8835,0,-18.3452	0/1:44:21,23:21:752:23:828:-50.7055,0,-41.2811	0/1:61:35,26:35:1232:26:932:-51.2229,0,-70.178	1/1:126:0,126:0:0:126:4512:-368.98,-37.9298,0	1/1:80:0,80:0:0:80:2872:-221.148,-24.0824,0
chr08	9369612	.	C	T	127892	PASS	AB=0.490599;ABP=5.21504;AC=150;AF=0.806452;AN=186;AO=5935;CIGAR=1X;DP=7414;DPB=7414;DPRA=0;EPP=12890.7;EPPR=3192.91;GTI=0;LEN=1;MEANALT=1.05376;MQM=59.5619;MQMR=59.9233;NS=93;NUMALT=1;ODDS=0.0334089;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212091;QR=52594;RO=1473;RPL=0;RPP=12890.7;RPPR=3192.91;RPR=5935;RUN=1;SAF=5935;SAP=12890.7;SAR=0;SRF=1473;SRP=3201.59;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:61:0,61:0:0:61:2158:-194,-18.3628,0	1/1:71:0,71:0:0:71:2539:-228.73,-21.3731,0	0/1:137:64,73:64:2269:73:2592:-192.218,0,-163.086	1/1:184:0,183:0:0:183:6532:-587.567,-55.0885,0	0/1:71:38,33:38:1355:33:1184:-85.487,0,-100.841	0/1:69:38,31:38:1348:31:1116:-79.9505,0,-100.849	1/1:91:0,91:0:0:91:3234:-291.251,-27.3937,0	1/1:160:0,160:0:0:160:5684:-511.573,-48.1648,0	1/1:118:0,118:0:0:118:4236:-381.368,-35.5215,0	1/1:61:0,61:0:0:61:2186:-196.993,-18.3628,0	1/1:40:0,40:0:0:40:1436:-129.53,-12.0412,0	1/1:76:0,76:0:0:76:2732:-246.074,-22.8783,0	1/1:67:0,67:0:0:67:2382:-214.554,-20.169,0	1/1:65:0,65:0:0:65:2304:-207.592,-19.567,0	1/1:50:0,50:0:0:50:1800:-162.278,-15.0515,0	1/1:54:0,54:0:0:54:1944:-175.214,-16.2556,0	1/1:32:0,32:0:0:32:1152:-103.976,-9.63296,0	1/1:22:0,22:0:0:22:775:-70.0548,-6.62266,0	1/1:31:0,31:0:0:31:1116:-100.708,-9.33193,0	1/1:212:0,212:0:0:212:7604:-684.292,-63.8184,0	1/1:159:2,157:2:72:157:5611:-497.452,-41.027,0	0/1:172:106,66:106:3800:66:2357:-160.592,0,-290.42	1/1:79:0,79:0:0:79:2812:-252.671,-23.7814,0	0/1:85:27,58:27:968:58:2079:-161.778,0,-61.8498	1/1:92:0,92:0:0:92:3296:-296.709,-27.6948,0	0/1:200:96,104:96:3427:104:3703:-273.062,0,-248.437	0/1:197:90,107:90:3228:107:3825:-285.078,0,-231.431	1/1:29:0,28:0:0:28:993:-89.3228,-8.42884,0	1/1:234:0,234:0:0:234:8368:-752.584,-70.441,0	1/1:145:0,145:0:0:145:5187:-466.892,-43.6494,0	0/1:75:46,29:46:1644:29:1027:-70.1649,0,-125.671	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.87105	1/1:12:0,12:0:0:12:428:-38.8542,-3.61236,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:3:0,3:0:0:3:108:-10.0667,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:115:0,115:0:0:115:4118:-370.711,-34.6185,0	0/1:87:40,47:40:1421:47:1680:-125.292,0,-101.996	0/1:39:22,17:22:788:17:612:-43.6651,0,-59.5046	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:107:50,57:50:1784:57:2039:-151.557,0,-128.624	0/1:34:12,22:12:424:22:783:-60.5473,0,-28.2614	0/1:152:92,60:92:3267:60:2148:-147.822,0,-248.492	0/1:43:20,23:20:712:23:828:-61.8975,0,-51.4624	1/1:58:0,58:0:0:58:2072:-186.745,-17.4597,0	0/1:109:53,56:53:1881:56:2008:-148.161,0,-136.73	0/1:107:51,56:51:1824:56:1977:-145.871,0,-132.231	0/1:110:58,50:58:2076:50:1792:-128.687,0,-154.24	1/1:113:3,110:3:108:110:3952:-345.65,-23.9412,0	1/1:49:0,49:0:0:49:1755:-158.214,-14.7505,0	1/1:133:0,133:0:0:133:4764:-427.789,-40.037,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:139:63,76:63:2264:76:2719:-202.903,0,-162.171	0/1:47:22,24:22:775:24:864:-64.0007,0,-56.0076	0/1:16:4,12:4:140:12:432:-34.4047,0,-8.1281	0/1:95:52,43:52:1852:43:1538:-110.094,0,-138.362	0/1:43:19,24:19:684:24:864:-65.1383,0,-48.946	.:.:.:.:.:.:.:.	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:93:0,93:0:0:93:3314:-298.329,-27.9958,0	1/1:89:0,89:0:0:89:3170:-285.372,-26.7917,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:111:49,62:49:1760:62:2216:-166.281,0,-125.27	1/1:96:0,96:0:0:96:3429:-308.793,-28.8989,0	1/1:59:0,59:0:0:59:2112:-189.561,-17.7608,0	1/1:58:0,58:0:0:58:2084:-187.823,-17.4597,0	1/1:136:1,135:1:36:135:4819:-430.187,-37.3418,0	0/1:158:111,47:111:3963:47:1683:-104.191,0,-309.296	1/1:35:0,35:0:0:35:1241:-111.986,-10.5361,0	1/1:47:0,47:0:0:47:1684:-151.829,-14.1484,0	1/1:50:0,50:0:0:50:1783:-160.743,-15.0515,0	1/1:14:0,13:0:0:13:460:-41.4737,-3.91339,0	1/1:152:1,151:1:36:151:5393:-481.758,-42.1583,0	0/1:42:17,25:17:612:25:888:-67.5939,0,-42.7702	1/1:120:2,118:2:72:118:4219:-373.02,-29.2869,0	1/1:99:0,99:0:0:99:3535:-318.355,-29.802,0	1/1:126:0,126:0:0:126:4485:-403.79,-37.9298,0	1/1:53:0,53:0:0:53:1887:-170.09,-15.9546,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:40:0,40:0:0:40:1425:-128.408,-12.0412,0	0/1:98:48,50:48:1724:50:1796:-132.387,0,-125.944	1/1:164:0,164:0:0:164:5857:-527.19,-49.3689,0	1/1:46:1,45:1:27:45:1612:-142.659,-11.1476,0	1/1:64:0,64:0:0:64:2304:-207.53,-19.2659,0	0/1:23:14,9:14:491:9:324:-22.5798,0,-37.5974	1/1:106:3,103:3:108:103:3680:-320.885,-21.834,0	1/1:21:0,21:0:0:21:743:-67.1923,-6.32163,0	0/1:47:24,23:24:864:23:828:-60.6712,0,-63.9342	1/1:57:0,57:0:0:57:2030:-182.928,-17.1587,0	0/1:46:19,27:19:684:27:955:-72.3265,0,-48.0429	0/1:116:54,62:54:1927:62:2207:-163.766,0,-138.787	0/1:69:50,19:50:1783:19:676:-40.3914,0,-139.981	1/1:105:0,105:0:0:105:3748:-337.503,-31.6082,0	1/1:85:0,85:0:0:85:3051:-274.809,-25.5876,0
chr08	9369723	.	T	G	28719	PASS	AB=0.530625;ABP=29.0788;AC=37;AF=0.196809;AN=188;AO=1705;CIGAR=1X;DP=8404;DPB=8404;DPRA=1.18302;EPP=3705.37;EPPR=14541;GTI=1;LEN=1;MEANALT=1.025;MQM=52.7126;MQMR=59.099;NS=94;NUMALT=1;ODDS=1.66711;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60933;QR=237191;RO=6695;RPL=1705;RPP=3705.37;RPPR=14541;RPR=0;RUN=1;SAF=0;SAP=3705.37;SAR=1705;SRF=0;SRP=14541;SRR=6695;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.608	0/0:110:110,0:110:3718:0:0:0,-33.1133,-333.635	0/1:137:85,52:85:3025:52:1868:-124.367,0,-231.094	0/0:188:187,1:187:6645:1:32:0,-53.3954,-594.791	0/1:60:23,37:23:801:37:1317:-100.292,0,-54.3312	0/1:67:31,36:31:1104:36:1288:-94.8433,0,-78.6211	0/0:134:134,0:134:4770:0:0:0,-40.338,-429.247	0/0:196:196,0:196:6936:0:0:0,-59.0019,-623.42	0/0:71:71,0:71:2437:0:0:0,-21.3731,-218.45	0/0:140:140,0:140:4977:0:0:0,-42.1442,-447.381	0/0:43:43,0:43:1514:0:0:0,-12.9443,-136.444	0/0:73:73,0:73:2593:0:0:0,-21.9752,-233.366	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.81	0/0:59:59,0:59:2073:0:0:0,-17.7608,-186.832	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.607	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.185	0/0:94:94,0:94:3333:0:0:0,-28.2968,-299.582	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.426	0/0:27:27,0:27:941:0:0:0,-8.12781,-84.7835	0/0:211:211,0:211:7495:0:0:0,-63.5173,-674.471	0/0:90:90,0:90:3128:0:0:0,-27.0927,-280.663	0/1:142:44,98:44:1557:98:3501:-269.358,0,-97.3327	0/0:41:41,0:41:1441:0:0:0,-12.3422,-129.977	0/1:140:76,64:76:2689:64:2285:-162.632,0,-199.953	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.884	0/1:302:162,140:162:5770:140:4989:-355.991,0,-427.755	0/1:136:48,88:48:1701:88:3148:-240.457,0,-112.425	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.188	0/0:219:218,1:218:7750:1:36:0,-62.3324,-693.711	0/0:142:141,1:141:4859:1:36:0,-39.1531,-433.593	0/1:122:67,55:67:2377:55:1964:-139.242,0,-177.449	0/1:7:1,6:1:36:6:216:-17.6552,0,-1.49106	0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0131	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6508	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4811	0/0:159:159,0:159:5696:0:0:0,-47.8638,-512.502	0/1:255:132,123:132:4701:123:4386:-315.678,0,-346.452	0/1:62:32,30:32:1144:30:1072:-76.9979,0,-84.5574	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:125:63,62:63:2229:62:2213:-161.086,0,-163.226	0/1:31:9,22:9:324:22:792:-61.5098,0,-20.1739	0/1:144:68,76:68:2416:76:2720:-198.812,0,-174.323	0/1:45:20,25:20:720:25:869:-64.8255,0,-51.582	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.077	0/1:72:28,44:28:1004:44:1562:-117.643,0,-69.0008	0/1:148:77,71:77:2717:71:2546:-181.433,0,-199.938	0/1:163:80,83:80:2841:83:2976:-216.344,0,-206.855	0/0:103:103,0:103:3661:0:0:0,-31.0061,-329.673	0/0:159:159,0:159:5649:0:0:0,-47.8638,-508.316	0/0:190:190,0:190:6769:0:0:0,-57.1957,-609.183	0/1:5:1,4:1:36:4:144:-11.6683,0,-2.09312	0/1:133:72,61:72:2561:61:2196:-156.245,0,-190.306	0/1:64:33,31:33:1153:31:1108:-80.5516,0,-84.7778	0/1:12:6,6:6:216:6:203:-13.8984,0,-16.1699	0/1:106:58,48:58:2064:48:1720:-122.547,0,-154.106	0/1:29:8,21:8:284:21:756:-59.3844,0,-17.1687	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:10:1,9:1:36:9:324:-26.4836,0,-0.587975	0/0:113:113,0:113:4014:0:0:0,-34.0164,-360.929	0/0:63:63,0:63:2205:0:0:0,-18.9649,-198.686	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45672	0/1:178:71,106:71:2540:106:3796:-285.505,0,-175.286	0/0:205:204,0:204:7200:0:0:0,-61.4101,-646.864	0/0:97:97,0:97:3452:0:0:0,-29.1999,-310.824	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.661	0/0:174:172,2:172:6136:2:72:0,-45.5594,-545.248	0/1:103:36,67:36:1269:67:2400:-183.471,0,-83.4961	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6899	0/0:82:82,0:82:2893:0:0:0,-24.6845,-260.043	0/0:76:76,0:76:2690:0:0:0,-22.8783,-241.525	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:99:99,0:99:3532:0:0:0,-29.802,-317.617	0/1:60:15,45:15:532:45:1608:-125.17,0,-30.0648	0/0:144:144,0:144:5061:0:0:0,-43.3483,-455.315	0/0:127:126,0:126:4477:0:0:0,-37.9298,-402.572	0/0:138:138,0:138:4868:0:0:0,-41.5421,-436.76	0/0:117:117,0:117:4184:0:0:0,-35.2205,-375.576	0/1:3:1,2:1:36:2:72:-5.91644,0,-2.69518	0/0:108:108,0:108:3833:0:0:0,-32.5112,-345.078	0/1:119:54,65:54:1924:65:2336:-171.434,0,-137.316	0/0:224:224,0:224:7949:0:0:0,-67.4307,-714.558	0/0:53:53,0:53:1807:0:0:0,-15.9546,-162.625	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.054	0/1:34:18,16:18:629:16:564:-39.9558,0,-46.6984	0/0:51:51,0:51:1790:0:0:0,-15.3525,-161.376	0/0:22:22,0:22:757:0:0:0,-6.62266,-68.3609	0/1:61:27,34:27:949:34:1220:-89.7799,0,-67.3427	0/0:49:49,0:49:1722:0:0:0,-14.7505,-155.086	0/1:32:17,15:17:604:15:531:-37.6347,0,-45.0351	0/1:54:22,32:22:792:32:1131:-85.3683,0,-55.1513	0/1:39:15,24:15:540:24:864:-65.8221,0,-37.187	0/0:108:107,0:107:3793:0:0:0,-32.2102,-340.648	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.327
chr08	9588950	.	TAT	GAA,TAA	446702	PASS	AB=0.472732,0.524397;ABP=25.5103,21.0228;AC=166,22;AF=0.882979,0.117021;AN=188;AO=14409,1877;CIGAR=1X1M1X,2M1X;DP=16317;DPB=16318;DPRA=0,1.16515;EPP=31291.8,4078.86;EPPR=7.35324;GTI=0;LEN=3,1;MEANALT=1.75532,2.30233;MQM=51.7543,59.8082;MQMR=60;NS=94;NUMALT=2;ODDS=12.4715;PAIRED=0,0;PAIREDR=0;PAO=2,1;PQA=54,18;PQR=0;PRO=0;QA=502265,66968;QR=72;RO=2;RPL=6701,876;RPP=155.83,21.0866;RPPR=3.0103;RPR=7708,1001;RUN=1,1;SAF=6701,876;SAP=155.83,21.0866;SAR=7708,1001;SRF=1;SRP=3.0103;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:105:0,105,0:0:0:105,0:3634,0:-325.621,-31.6082,0,-325.621,-31.6082,-325.621	1/1:187:0,187,0:0:0:187,0:6519,0:-580.631,-56.2926,0,-580.631,-56.2926,-580.631	1/1:157:0,157,0:0:0:157,0:5453,0:-486.191,-47.2617,0,-486.191,-47.2617,-486.191	1/1:308:0,306,0:0:0:306,0:10682,0:-955.433,-92.1152,0,-955.433,-92.1152,-955.433	1/1:139:0,138,0:0:0:138,0:4808,0:-428.49,-41.5421,0,-428.49,-41.5421,-428.49	1/1:113:0,113,0:0:0:113,0:3936,0:-352.277,-34.0164,0,-352.277,-34.0164,-352.277	1/1:236:0,236,0:0:0:236,0:8213,0:-730.762,-71.0431,0,-730.762,-71.0431,-730.762	1/1:330:0,328,2:0:0:328,2:11422,72:-1019.6,-98.7378,0,-1013.74,-92.5118,-1013.13	1/1:269:0,266,3:0:0:266,3:9217,108:-821.157,-80.074,0,-812.345,-70.9019,-811.441	1/1:209:0,209,0:0:0:209,0:7236,0:-644.492,-62.9153,0,-644.492,-62.9153,-644.492	1/1:153:0,152,0:0:0:152,0:5253,0:-468.547,-45.7566,0,-468.547,-45.7566,-468.547	1/1:199:1,198,0:1:36:198,0:6864,0:-610.339,-56.3067,0,-610.64,-59.6039,-613.577	1/1:181:0,180,0:0:0:180,0:6274,0:-559.721,-54.1854,0,-559.721,-54.1854,-559.721	1/1:176:0,175,1:0:0:175,1:6031,36:-537.249,-52.6803,0,-534.316,-49.3881,-534.015	1/1:162:0,160,0:0:0:160,0:5584,0:-497.52,-48.1648,0,-497.52,-48.1648,-497.52	1/1:143:0,142,0:0:0:142,0:4967,0:-443.994,-42.7463,0,-443.994,-42.7463,-443.994	1/1:141:0,141,0:0:0:141,0:4922,0:-438.438,-42.4452,0,-438.438,-42.4452,-438.438	1/1:115:0,115,0:0:0:115,0:4034,0:-360.034,-34.6185,0,-360.034,-34.6185,-360.034	1/1:89:0,89,0:0:0:89,0:3115,0:-278.493,-26.7917,0,-278.493,-26.7917,-278.493	1/1:338:0,338,0:0:0:338,0:11802,0:-1051.52,-101.748,0,-1051.52,-101.748,-1051.52	1/1:315:0,314,0:0:0:314,0:10950,0:-979.55,-94.5234,0,-979.55,-94.5234,-979.55	1/1:76:0,75,1:0:0:75,1:2614,36:-235.105,-22.5773,0,-232.171,-19.2837,-231.87	1/1:243:0,242,1:0:0:242,1:8471,36:-754.989,-72.8493,0,-752.054,-69.5546,-751.753	1/2:233:0,142,91:0:0:142,91:4970,3252:-665.493,-265.505,-222.758,-400.341,0,-372.947	1/1:179:0,178,1:0:0:178,1:6234,36:-555.977,-53.5833,0,-553.048,-50.2951,-552.747	1/2:367:0,118,249:0:0:118,249:4087,8882:-1055.79,-724.379,-688.857,-331.763,0,-256.807	1/1:437:0,434,3:0:0:434,3:15009,100:-1341.97,-130.647,0,-1333.88,-122.22,-1332.97	1/2:72:0,30,42:0:0:30,42:1049,1496:-206.88,-122.285,-113.254,-84.9448,0,-72.3015	1/1:262:0,261,0:0:0:261,0:9197,0:-826.757,-78.5688,0,-826.757,-78.5688,-826.757	1/1:265:0,255,9:0:0:255,9:8954,324:-796.159,-76.7627,0,-769.73,-50.3341,-767.021	1/2:210:0,108,102:0:0:108,102:3770,3653:-601.182,-298.265,-265.754,-303.268,0,-272.563	1/2:23:0,11,12:0:0:11,12:388,428:-66.5675,-35.2464,-31.9351,-31.674,0,-28.0617	1/1:38:0,38,0:0:0:38,0:1322,0:-119.084,-11.4391,0,-119.084,-11.4391,-119.084	1/2:16:0,12,4:0:0:12,4:413,144:-45.449,-12.1095,-8.49714,-33.695,0,-32.4909	1/1:33:0,33,0:0:0:33,0:1145,0:-103,-9.93399,0,-103,-9.93399,-103	1/2:23:0,13,10:0:0:13,10:448,356:-65.6836,-29.3709,-25.4576,-36.6633,0,-33.653	1/1:218:0,218,0:0:0:218,0:7629,0:-686.183,-65.6245,0,-686.183,-65.6245,-686.183	1/1:229:0,228,1:0:0:228,1:7896,36:-702.485,-68.6348,0,-699.738,-65.5483,-699.437	1/1:121:0,120,1:0:0:120,1:4176,21:-373.029,-36.1236,0,-371.442,-34.325,-371.141	1/1:7:0,7,0:0:0:7,0:248,0:-22.4692,-2.10721,0,-22.4692,-2.10721,-22.4692	1/2:193:0,81,112:0:0:81,112:2842,4021:-558.044,-328.352,-303.968,-230.045,0,-196.329	1/2:64:0,29,34:0:0:29,34:1027,1211:-181.756,-98.7008,-89.9709,-83.0494,0,-72.8144	1/1:277:0,277,0:0:0:277,0:9674,0:-863.707,-83.3853,0,-863.707,-83.3853,-863.707	1/1:197:0,196,1:0:0:196,1:6862,36:-611.364,-59.0019,0,-608.426,-55.7046,-608.125	1/1:189:0,189,0:0:0:189,0:6516,0:-580.955,-56.8947,0,-580.955,-56.8947,-580.955	1/1:122:0,122,0:0:0:122,0:4273,0:-383.377,-36.7257,0,-383.377,-36.7257,-383.377	1/1:252:0,251,1:0:0:251,1:8781,36:-784.429,-75.5585,0,-781.499,-72.2703,-781.198	1/2:253:0,141,112:0:0:141,112:4884,4001:-720.112,-326.561,-284.115,-393.902,0,-360.187	1/1:212:0,211,1:0:0:211,1:7352,36:-655.717,-63.5173,0,-652.781,-60.2227,-652.48	1/1:256:0,256,0:0:0:256,0:8919,0:-794.053,-77.0637,0,-794.053,-77.0637,-794.053	1/1:162:0,162,0:0:0:162,0:5615,0:-505.026,-48.7669,0,-505.026,-48.7669,-505.026	1/1:15:0,15,0:0:0:15,0:516,0:-46.5361,-4.51545,0,-46.5361,-4.51545,-46.5361	1/2:195:0,84,110:0:0:84,110:2958,3926:-558.593,-320.063,-294.777,-238.526,0,-205.413	1/1:59:0,59,0:0:0:59,0:2044,0:-184.053,-17.7608,0,-184.053,-17.7608,-184.053	1/2:36:0,20,16:0:0:20,16:677,568:-101.147,-46.635,-40.6144,-54.8586,0,-50.0421	1/2:217:0,100,114:0:0:100,114:3522,4088:-617.641,-3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chr08	9588990	.	G	A	199170	PASS	AB=0.518877;ABP=9.4049;AC=166;AF=0.882979;AN=188;AO=9123;CIGAR=1X;DP=10128;DPB=10128;DPRA=0;EPP=19813.4;EPPR=2181;GTI=2;LEN=1;MEANALT=1.02128;MQM=45.8567;MQMR=59.7996;NS=94;NUMALT=1;ODDS=0.113674;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=325255;QR=35720;RO=1003;RPL=9123;RPP=19813.4;RPPR=2181;RPR=0;RUN=1;SAF=0;SAP=19813.4;SAR=9123;SRF=0;SRP=2181;SRR=1003;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1551:-137.597,-13.2453,0	1/1:137:0,137:0:0:137:4870:-431.516,-41.2411,0	1/1:80:0,80:0:0:80:2850:-251.725,-24.0824,0	1/1:123:0,123:0:0:123:4376:-387.916,-37.0267,0	1/1:86:0,86:0:0:86:3051:-270.321,-25.8886,0	1/1:64:0,64:0:0:64:2268:-202.205,-19.2659,0	1/1:126:0,126:0:0:126:4481:-394.131,-37.9298,0	1/1:224:0,224:0:0:224:7973:-708.153,-67.4307,0	1/1:133:0,133:0:0:133:4732:-417.944,-40.037,0	1/1:138:0,138:0:0:138:4936:-436.581,-41.5421,0	1/1:95:0,95:0:0:95:3408:-301.513,-28.5979,0	1/1:83:1,82:1:36:82:2928:-255.026,-21.3872,0	1/1:106:0,106:0:0:106:3804:-337.45,-31.9092,0	1/1:132:0,132:0:0:132:4724:-418.331,-39.736,0	1/1:89:0,89:0:0:89:3198:-282.375,-26.7917,0	1/1:73:0,73:0:0:73:2620:-232.385,-21.9752,0	1/1:115:0,115:0:0:115:4136:-366.683,-34.6185,0	1/1:90:0,90:0:0:90:3232:-287.245,-27.0927,0	1/1:55:0,55:0:0:55:1976:-175.557,-16.5567,0	1/1:181:0,180:0:0:180:6411:-565.177,-54.1854,0	1/1:128:0,128:0:0:128:4512:-400.825,-38.5318,0	1/1:114:0,114:0:0:114:4074:-364.8,-34.3174,0	1/1:122:0,122:0:0:122:4364:-385.052,-36.7257,0	0/1:151:57,94:57:2017:94:3352:-251.667,0,-136.346	1/1:89:0,89:0:0:89:3179:-281.585,-26.7917,0	0/1:344:164,180:164:5839:180:6388:-468.642,0,-422.051	1/1:190:0,190:0:0:190:6762:-598.574,-57.1957,0	0/1:41:23,18:23:824:18:648:-45.4986,0,-62.1319	1/1:146:0,146:0:0:146:5196:-465.272,-43.9504,0	1/1:168:4,164:4:144:164:5857:-504.658,-37.2594,0	0/1:102:53,49:53:1892:49:1752:-123.561,0,-139.851	0/1:11:4,7:4:140:7:252:-19.4447,0,-9.63325	1/1:5:0,5:0:0:5:176:-15.983,-1.50515,0	0/1:7:1,6:1:36:6:212:-17.1209,0,-1.49106	1/1:13:0,13:0:0:13:440:-39.5487,-3.91339,0	0/1:4:2,2:2:72:2:68:-5.20047,0,-5.6326	1/1:287:0,287:0:0:287:10295:-921.621,-86.3956,0	1/1:158:0,158:0:0:158:5554:-490.724,-47.5627,0	1/1:74:0,74:0:0:74:2639:-234.482,-22.2762,0	1/1:5:0,5:0:0:5:180:-16.3232,-1.50515,0	0/1:91:48,43:48:1711:43:1511:-106.623,0,-126.872	0/1:36:20,16:20:720:16:572:-40.3182,0,-54.2871	1/1:166:0,166:0:0:166:5935:-525.666,-49.971,0	1/1:120:0,120:0:0:120:4300:-379.866,-36.1236,0	1/1:119:0,119:0:0:119:4268:-377.408,-35.8226,0	1/1:152:0,152:0:0:152:5420:-484.698,-45.7566,0	1/1:146:0,146:0:0:146:5197:-461.271,-43.9504,0	0/1:128:55,73:55:1964:73:2599:-191.776,0,-138.501	1/1:129:0,129:0:0:129:4600:-407.304,-38.8329,0	1/1:178:0,178:0:0:178:6349:-561.823,-53.5833,0	1/1:160:0,160:0:0:160:5660:-507.021,-48.1648,0	1/1:7:0,7:0:0:7:252:-22.5634,-2.10721,0	0/1:121:64,57:64:2296:57:2036:-144.673,0,-170.476	1/1:76:0,76:0:0:76:2732:-244.466,-22.8783,0	0/1:29:14,15:14:486:15:536:-39.3374,0,-35.338	0/1:77:36,41:36:1280:41:1456:-105.072,0,-92.2587	1/1:121:0,121:0:0:121:4304:-380.672,-36.4246,0	1/1:9:0,9:0:0:9:324:-29.4317,-2.70927,0	1/1:15:0,15:0:0:15:536:-48.1841,-4.51545,0	1/1:94:0,94:0:0:94:3345:-295.149,-28.2968,0	1/1:142:0,142:0:0:142:5100:-449.778,-42.7463,0	1/1:15:0,15:0:0:15:532:-47.5005,-4.51545,0	1/1:163:0,163:0:0:163:5781:-516.697,-49.0679,0	1/1:176:4,172:4:140:172:6124:-526.817,-40.0367,0	0/1:132:51,81:51:1815:81:2904:-217.447,0,-123.89	1/1:54:0,54:0:0:54:1872:-164.962,-16.2556,0	1/1:148:0,148:0:0:148:5257:-463.692,-44.5524,0	1/1:81:0,81:0:0:81:2866:-252.952,-24.3834,0	1/1:54:0,54:0:0:54:1944:-170.98,-16.2556,0	1/1:80:0,80:0:0:80:2840:-252.836,-24.0824,0	1/1:122:0,122:0:0:122:4349:-388.907,-36.7257,0	0/1:33:19,14:19:676:14:496:-34.2076,0,-51.2247	1/1:85:0,85:0:0:85:3008:-267.237,-25.5876,0	0/1:84:37,47:37:1324:47:1680:-124.593,0,-94.1756	1/1:258:0,258:0:0:258:9187:-811.603,-77.6657,0	1/1:144:0,144:0:0:144:5106:-450.833,-43.3483,0	0/1:172:75,97:75:2679:97:3463:-255.312,0,-189.387	1/1:150:0,150:0:0:150:5330:-473.592,-45.1545,0	1/1:25:0,25:0:0:25:892:-79.2437,-7.52575,0	1/1:126:0,126:0:0:126:4480:-397.252,-37.9298,0	0/1:64:23,41:23:799:41:1460:-110.586,0,-52.9616	1/1:195:0,195:0:0:195:6909:-611.962,-58.7009,0	1/1:135:0,135:0:0:135:4852:-429.39,-40.6391,0	1/1:76:0,76:0:0:76:2724:-241.483,-22.8783,0	1/1:139:0,138:0:0:138:4934:-435.538,-41.5421,0	1/1:197:0,197:0:0:197:7064:-625.347,-59.3029,0	1/1:47:0,47:0:0:47:1684:-150.223,-14.1484,0	0/1:105:55,50:55:1939:50:1796:-128.119,0,-143.178	0/1:115:62,53:62:2211:53:1904:-135.109,0,-164.611	1/1:55:0,55:0:0:55:1972:-173.686,-16.5567,0	0/1:130:66,64:66:2368:64:2300:-162.767,0,-174.232	0/1:89:65,24:65:2312:24:860:-49.2046,0,-181.547	1/1:79:0,79:0:0:79:2824:-250.518,-23.7814,0	1/1:151:0,151:0:0:151:5404:-477.933,-45.4555,0
chr08	9635298	.	A	T	11483.8	PASS	AB=0.265393;ABP=2029.57;AC=22;AF=0.117021;AN=188;AO=1141;CIGAR=1X;DP=21053;DPB=21053;DPRA=0.956571;EPP=2480.66;EPPR=43224;GTI=6;LEN=1;MEANALT=1.03846;MQM=59.9606;MQMR=59.9505;NS=94;NUMALT=1;ODDS=5.02418;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40740;QR=711781;RO=19904;RPL=0;RPP=2480.66;RPPR=43224;RPR=1141;RUN=1;SAF=1141;SAP=2480.66;SAR=0;SRF=19904;SRP=43224;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.95	0/0:439:439,0:439:15625:0:0:0,-132.152,-1405.59	0/0:224:224,0:224:8002:0:0:0,-67.4307,-720.019	0/0:449:449,0:449:15960:0:0:0,-135.162,-1436.08	0/0:152:152,0:152:5433:0:0:0,-45.7566,-489.098	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.447	0/0:322:321,0:321:11482:0:0:0,-96.6306,-1032.77	0/0:460:460,0:460:16460:0:0:0,-138.474,-1481.05	0/0:162:162,0:162:5797:0:0:0,-48.7669,-521.842	0/0:234:234,0:234:8362:0:0:0,-70.441,-752.546	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:158:158,0:158:5664:0:0:0,-47.5627,-509.874	0/0:179:177,0:177:6338:0:0:0,-53.2823,-570.147	0/0:118:118,0:118:4221:0:0:0,-35.5215,-380.069	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.624	0/0:166:166,0:166:5952:0:0:0,-49.971,-535.656	0/0:132:132,0:132:4714:0:0:0,-39.736,-424.417	0/0:139:139,0:139:4996:0:0:0,-41.8432,-449.777	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.441	0/0:530:529,0:529:18966:0:0:0,-159.245,-1706.12	0/0:285:285,0:285:10202:0:0:0,-85.7935,-917.975	0/0:320:320,0:320:11461:0:0:0,-96.3296,-1031.36	0/0:150:150,0:150:5377:0:0:0,-45.1545,-484.056	0/1:217:163,54:163:5803:54:1938:-109.373,0,-456.901	0/0:126:126,0:126:4505:0:0:0,-37.9298,-405.61	0/1:661:500,161:500:17783:161:5707:-314.743,0,-1401.09	0/0:495:495,0:495:17617:0:0:0,-149.01,-1584.88	0/1:82:63,19:63:2268:19:684:-37.2059,0,-179.697	0/0:799:799,0:799:28605:0:0:0,-240.523,-2573.56	0/0:275:272,3:272:9711:3:108:0,-72.7081,-863.057	0/1:198:139,59:139:4962:59:2101:-129.754,0,-387.123	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:10:5,5:5:180:5:176:-13.1741,0,-13.5418	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:31:22,9:22:788:9:320:-19.8104,0,-61.9129	0/0:418:418,0:418:14979:0:0:0,-125.831,-1347.83	0/0:548:548,0:548:19453:0:0:0,-164.964,-1750.22	0/0:145:145,0:145:5216:0:0:0,-43.6493,-469.575	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:335:230,105:230:8261:105:3758:-237.573,0,-642.636	0/1:100:81,19:81:2912:19:684:-31.7873,0,-232.212	0/0:313:313,0:313:11217:0:0:0,-94.2224,-1009.41	0/0:167:167,0:167:5958:0:0:0,-50.272,-536.321	0/0:196:196,0:196:7033:0:0:0,-59.0019,-633.023	0/0:202:202,0:202:7222:0:0:0,-60.8081,-650.031	0/0:389:388,1:388:13859:1:36:0,-113.502,-1243	0/1:403:307,96:307:11001:96:3439:-188.405,0,-868.662	0/0:294:294,0:294:10458:0:0:0,-88.5028,-941.121	0/0:357:357,0:357:12779:0:0:0,-107.468,-1149.92	0/0:329:328,0:328:11761:0:0:0,-98.7378,-1057.99	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.0423	0/1:290:207,83:207:7379:83:2972:-180.406,0,-576.668	0/0:86:86,0:86:3058:0:0:0,-25.8886,-275.447	0/1:36:23,13:23:828:13:454:-30.3541,0,-63.9989	0/1:344:238,106:238:8491:106:3778:-236.662,0,-660.477	0/0:136:136,0:136:4835:0:0:0,-40.9401,-435.302	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.87	0/0:239:239,0:239:8596:0:0:0,-71.9462,-773.63	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1525	0/0:568:568,0:568:20332:0:0:0,-170.985,-1829.37	0/0:466:459,6:459:16397:6:216:0,-120.548,-1455.52	0/1:152:110,42:110:3944:42:1496:-89.178,0,-308.03	0/0:240:240,0:240:8560:0:0:0,-72.2472,-770.26	0/0:343:343,0:343:12268:0:0:0,-103.253,-1103.94	0/0:269:263,6:263:9418:6:216:0,-61.1866,-827.787	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:200:200,0:200:7154:0:0:0,-60.206,-643.896	0/0:132:132,0:132:4744:0:0:0,-39.736,-427.116	0/1:33:25,8:25:900:8:288:-16.3334,0,-71.387	0/0:269:268,0:268:9594:0:0:0,-80.676,-862.615	0/1:165:114,51:114:4070:51:1822:-114.591,0,-316.814	0/0:246:246,0:246:8836:0:0:0,-74.0534,-795.191	0/0:475:475,0:475:16973:0:0:0,-142.989,-1527.19	0/1:204:158,46:158:5627:46:1637:-86.1984,0,-445.131	0/0:244:244,0:244:8734:0:0:0,-73.4513,-786.045	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:297:297,0:297:10603:0:0:0,-89.4059,-954.18	0/1:283:222,61:222:7972:61:2181:-111.363,0,-632.307	0/0:522:522,0:522:18638:0:0:0,-157.138,-1676.99	0/0:229:229,0:229:8201:0:0:0,-68.9359,-738.098	0/0:143:142,0:142:5088:0:0:0,-42.7463,-457.699	0/0:154:154,0:154:5517:0:0:0,-46.3586,-496.653	0/0:339:339,0:339:12153:0:0:0,-102.049,-1093.61	0/0:108:108,0:108:3865:0:0:0,-32.5112,-347.854	0/1:151:114,37:114:4096:37:1317:-73.3661,0,-322.432	0/1:171:127,44:127:4560:44:1584:-91.3754,0,-359.087	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.527	0/1:194:143,51:143:5129:51:1827:-106.31,0,-403.349	0/1:168:116,52:116:4132:52:1857:-116.835,0,-321.49	0/0:322:322,0:322:11515:0:0:0,-96.9317,-1036.22	0/0:216:216,0:216:7729:0:0:0,-65.0225,-695.639
chr08	9635306	.	G	T,C	188682	PASS	AB=0.51243,0.200785;ABP=31.1358,4557.66;AC=85,12;AF=0.452128,0.0638298;AN=188;AO=10739,1176;CIGAR=1X,1X;DP=20967;DPB=20967;DPRA=0,0;EPP=23322.5,2556.66;EPPR=19633.1;GTI=7;LEN=1,1;MEANALT=1.33333,1.96429;MQM=59.9427,59.9592;MQMR=59.9692;NS=94;NUMALT=2;ODDS=6.09974;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=384291,42031;QR=322126;RO=9048;RPL=0,0;RPP=23322.5,2556.66;RPPR=19633.1;RPR=10739,1176;RUN=1,1;SAF=10739,1176;SAP=23322.5,2556.66;SAR=0,0;SRF=9048;SRP=19650.5;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:26,57,0:26:928:57,0:2052,0:-159.965,0,-58.8528,-167.792,-76.0115,-243.445	0/1:436:155,281,0:155:5519:281,0:10093,0:-776.778,0,-365.584,-823.437,-450.174,-1273.25	0/1:223:104,119,0:104:3702:119,0:4256,0:-316.078,0,-266.215,-347.385,-302.037,-649.066	0/1:449:183,266,0:183:6511:266,0:9490,0:-718.894,0,-450.897,-773.982,-530.971,-1304.6	0/1:152:56,96,0:56:1997:96,0:3433,0:-263.426,0,-134.245,-280.284,-163.144,-443.071	0/1:99:53,46,0:53:1889:46,0:1656,0:-119.498,0,-140.114,-135.453,-153.961,-289.056	0/1:318:131,186,0:131:4670:186,0:6568,0:-495.541,0,-324.822,-534.976,-380.814,-915.647	0/1:457:141,316,0:141:4996:316,0:11286,0:-878.054,0,-312.215,-920.499,-407.34,-1327.48	0/1:162:78,83,1:78:2750:83,1:2980,36:-219.606,0,-198.915,-240.149,-220.963,-463.753	0/1:230:97,133,0:97:3412:133,0:4749,0:-358.326,0,-238.043,-387.526,-278.08,-665.253	0/1:94:58,36,0:58:2031:36,0:1296,0:-88.6448,0,-154.76,-106.105,-165.598,-271.346	0/1:154:88,66,0:88:3130:66,0:2368,0:-167.011,0,-235.564,-193.502,-255.432,-448.576	0/1:182:98,84,0:98:3497:84,0:2988,0:-214.363,0,-260.152,-243.864,-285.439,-528.947	0/1:118:67,51,0:67:2333:51,0:1828,0:-129.279,0,-174.701,-149.448,-190.053,-339.148	0/1:110:55,55,0:55:1976:55,0:1972,0:-144.637,0,-145.001,-161.194,-161.558,-322.393	0/1:171:100,71,0:100:3557:71,0:2535,0:-176.924,0,-268.805,-207.027,-290.178,-496.849	0/1:129:74,55,0:74:2633:55,0:1969,0:-138.652,0,-198.383,-160.928,-214.94,-375.511	0/1:138:89,48,0:89:3185:48,0:1713,0:-112.853,0,-245.271,-139.644,-259.72,-399.367	0/1:83:45,38,0:45:1597:38,0:1360,0:-97.7151,0,-119.033,-111.261,-130.472,-241.377	0/1:524:155,369,0:155:5560:369,0:13213,0:-1031.22,0,-342.783,-1077.88,-453.863,-1531.39	0/1:282:138,144,0:138:4945:144,0:5159,0:-379.502,0,-360.307,-421.044,-403.655,-824.341	0/1:322:123,199,0:123:4331:199,0:7148,0:-546.442,0,-293.033,-583.468,-352.938,-936.052	0/1:149:52,97,0:52:1852:97,0:3469,0:-267.564,0,-122.106,-283.218,-151.306,-434.168	0/1:219:104,58,57:104:3709:58,57:2088,2036:-139.065,0,-284.817,-4.37648,-136.28,-289.493	0/1:123:63,60,0:63:2230:60,0:2134,0:-155.294,0,-163.934,-174.259,-181.996,-355.9	0/1:652:293,197,162:293:10425:197,162:7045,5772:-486.249,0,-790.309,-103.978,-379.139,-904.822	0/1:494:274,220,0:274:9730:220,0:7865,0:-559.056,0,-726.94,-641.539,-793.167,-1434.35	0/1:83:37,25,21:37:1313:25,21:891,748:-61.4894,0,-99.4499,-11.66,-46.0075,-112.314	0/1:794:281,513,0:281:10010:513,0:18316,0:-1408.98,0,-661.815,-1493.57,-816.243,-2309.46	0/1:275:95,177,3:95:3371:177,3:6314,108:-485.764,0,-221.363,-505.55,-265.833,-779.296	0/1:199:69,69,61:69:2468:69,61:2457,2172:-179.485,0,-180.475,-23.2281,-24.2191,-206.112	1/2:11:3,4,4:3:104:4,4:144,144:-14.1564,-3.30978,-10.5531,-3.30978,0,-10.5531	0/1:33:13,20,0:13:468:20,0:716,0:-54.8337,0,-32.5257,-58.7471,-38.5463,-96.9343	0/2:10:5,0,5:5:180:0,5:0,180:-13.5402,-15.0453,-29.7324,0,-15.0469,-13.5418	0/1:32:10,22,0:10:360:22,0:792,0:-61.9727,0,-23.1113,-64.983,-29.734,-94.3572	1/2:31:8,14,9:8:288:14,9:504,324:-41.653,-2.93742,-22.2223,-17.6245,0,-38.4146	0/1:416:233,183,0:233:8315:183,0:6580,0:-467.049,0,-623.128,-537.189,-678.216,-1215.05	0/1:539:208,331,0:208:7407:331,0:11864,0:-905.35,0,-504.421,-967.964,-604.062,-1571.67	0/1:144:84,60,0:84:3016:60,0:2160,0:-151.318,0,-228.322,-176.605,-246.384,-422.629	0/1:8:1,7,0:1:36:7,0:252,0:-20.6207,0,-1.19003,-20.9217,-3.29724,-23.8592	0/1:339:114,115,110:114:4073:115,110:4098,3948:-299.699,0,-297.462,-11.9769,-10.0405,-310.945	0/1:100:60,21,19:60:2160:21,19:756,680:-43.6251,0,-169.925,-6.236,-120.795,-176.761	0/1:311:104,207,0:104:3721:207,0:7412,0:-573.503,0,-241.469,-604.81,-303.782,-908.235	0/1:166:102,64,0:102:3664:64,0:2292,0:-156.566,0,-279.992,-187.271,-299.257,-486.17	0/1:192:111,81,0:111:3969:81,0:2897,0:-203.163,0,-299.602,-236.578,-323.985,-560.205	0/1:201:69,132,0:69:2438:132,0:4729,0:-365.26,0,-159.165,-386.031,-198.901,-584.577	0/1:385:148,236,1:148:5293:236,1:8456,36:-645.085,0,-360.549,-686.7,-428.654,-1117.99	0/1:404:180,124,100:180:6423:124,100:4444,3571:-308.258,0,-486.285,-71.309,-232.477,-564.818	0/1:290:79,211,0:79:2772:211,0:7561,0:-593.221,0,-162.418,-617.003,-225.935,-842.585	0/1:357:142,214,0:142:5089:214,0:7671,0:-582.895,0,-350.625,-625.641,-415.045,-1040.69	0/1:326:111,215,0:111:3958:215,0:7723,0:-596.964,0,-258.273,-630.378,-322.995,-953.015	0/1:20:12,8,0:12:432:8,0:285,0:-19.9277,0,-33.2006,-23.54,-35.6088,-58.7917	0/2:292:122,85,85:122:4333:85,85:3026,3056:-212.589,-2.69057,-330.157,0,-106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chr08	9635315	.	GAGT	GAGG	140984	PASS	AB=0.421339;ABP=1127.28;AC=94;AF=0.5;AN=188;AO=8814;CIGAR=3M1X;DP=20919;DPB=20919;DPRA=0;EPP=18813.7;EPPR=25956.7;GTI=0;LEN=1;MEANALT=1.7766;MQM=59.9755;MQMR=59.9409;NS=94;NUMALT=1;ODDS=86.245;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=314557;QR=425660;RO=12020;RPL=38;RPP=18813.7;RPPR=25956.7;RPR=8776;RUN=1;SAF=8814;SAP=19142.4;SAR=0;SRF=12020;SRP=26104.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:58,23:58:2060:23:828:-50.1744,0,-161.004	0/1:439:289,147:289:10266:147:5204:-336.943,0,-792.297	0/1:222:121,99:121:4266:99:3556:-253.752,0,-317.162	0/1:444:268,173:268:9482:173:6155:-420.972,0,-720.274	0/1:149:95,54:95:3371:54:1936:-129.663,0,-258.753	0/1:97:46,51:46:1639:51:1817:-134.239,0,-118.57	0/1:318:190,127:190:6688:127:4513:-310.691,0,-506.35	0/1:454:319,133:319:11251:133:4753:-291.502,0,-876.068	0/1:164:85,77:85:3008:77:2720:-195.981,0,-221.888	0/1:226:134,91:134:4756:91:3240:-223.774,0,-360.155	0/1:93:36,56:36:1269:56:1994:-151.717,0,-86.4955	0/1:151:67,84:67:2371:84:2990:-223.875,0,-168.185	0/1:181:84,97:84:2943:97:3472:-258.205,0,-210.618	0/1:114:51,63:51:1803:63:2252:-168.626,0,-128.233	0/1:111:54,57:54:1932:57:2026:-149.198,0,-140.737	0/1:169:70,97:70:2447:97:3475:-262.205,0,-169.857	0/1:126:56,70:56:1975:70:2500:-187.323,0,-140.094	0/1:138:48,89:48:1704:89:3192:-246.04,0,-112.173	0/1:82:38,44:38:1357:44:1580:-117.807,0,-97.7459	0/1:526:369,155:369:13090:155:5533:-340.001,0,-1019.82	0/1:281:144,136:144:5127:136:4872:-353.984,0,-376.897	0/1:317:190,124:190:6744:124:4428:-303.81,0,-512.155	0/1:149:98,51:98:3479:51:1828:-119.947,0,-268.467	0/1:216:114,101:114:4034:101:3591:-258.306,0,-298.168	0/1:125:62,63:62:2181:63:2256:-165.674,0,-158.919	0/1:661:365,292:365:12917:292:10407:-738.424,0,-964.21	0/1:492:222,267:222:7867:267:9538:-710.85,0,-560.271	0/1:82:47,35:47:1663:35:1260:-89.0206,0,-125.273	0/1:789:516,271:516:18288:271:9713:-636.845,0,-1408.24	0/1:270:177,90:177:6237:90:3209:-208.394,0,-480.796	0/1:199:130,68:130:4588:68:2421:-158.181,0,-353.125	0/1:11:8,3:8:287:3:104:-6.39148,0,-22.8652	0/1:33:20,13:20:712:13:468:-32.5257,0,-54.4721	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5402	0/1:32:22,10:22:792:10:356:-22.7483,0,-61.9727	0/1:31:23,8:23:812:8:288:-16.9355,0,-64.0685	0/1:414:186,228:186:6619:228:8125:-606.64,0,-471.166	0/1:546:339,204:339:11985:204:7273:-490.803,0,-914.686	0/1:141:61,80:61:2181:80:2872:-216.271,0,-154.111	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:335:225,109:225:7974:109:3899:-250.2,0,-616.775	0/1:99:40,58:40:1431:58:2073:-156.978,0,-99.2269	0/1:314:209,105:209:7378:105:3752:-243.357,0,-569.55	0/1:164:65,98:65:2291:98:3493:-265.212,0,-157.081	0/1:192:84,108:84:2922:108:3863:-290.066,0,-205.415	0/1:203:136,67:136:4793:67:2376:-152.988,0,-370.422	0/1:385:244,141:244:8656:141:5011:-335.239,0,-662.917	0/1:408:227,180:227:8003:180:6436:-456.486,0,-597.46	0/1:297:218,77:218:7731:77:2756:-159.191,0,-606.734	0/1:354:214,138:214:7630:138:4916:-336.296,0,-580.446	0/1:328:220,108:220:7780:108:3868:-249.577,0,-601.499	0/1:19:8,11:8:287:11:392:-29.9005,0,-20.3697	0/1:291:170,119:170:6014:119:4280:-298.069,0,-454.057	0/1:86:60,26:60:2151:26:915:-56.777,0,-167.968	0/1:38:26,12:26:922:12:428:-27.4197,0,-71.8497	0/1:344:226,118:226:7981:118:4207:-275.258,0,-614.61	0/1:136:102,31:102:3610:31:1108:-59.6344,0,-284.711	0/1:26:16,10:16:560:10:352:-24.1914,0,-42.9012	0/1:33:15,18:15:526:18:644:-48.3566,0,-37.7353	0/1:112:65,47:65:2310:47:1665:-116.42,0,-174.442	0/1:238:126,111:126:4510:111:3976:-286.326,0,-334.365	0/1:31:23,8:23:824:8:288:-16.9355,0,-65.1514	0/1:567:303,260:303:10734:260:9250:-662.634,0,-796.136	0/1:464:302,161:302:10757:161:5756:-378.438,0,-828.316	0/1:151:76,75:76:2716:75:2668:-194.678,0,-199.228	0/1:239:150,86:150:5299:86:3084:-206.385,0,-405.518	0/1:343:211,130:211:7434:130:4660:-316.668,0,-565.367	0/1:270:188,79:188:6638:79:2821:-173.409,0,-516.787	0/1:33:11,22:11:396:22:775:-60.1364,0,-26.0488	0/1:197:105,92:105:3726:92:3276:-235.759,0,-276.239	0/1:129:60,69:60:2117:69:2464:-183.182,0,-151.965	0/1:32:17,10:17:600:10:360:-24.2646,0,-45.8514	0/1:265:141,124:141:4997:124:4415:-317.523,0,-370.107	0/1:164:102,62:102:3600:62:2228:-151.415,0,-274.838	0/1:244:157,87:157:5522:87:3088:-204.696,0,-423.656	0/1:471:267,204:267:9479:204:7277:-513.196,0,-711.273	0/1:207:99,108:99:3510:108:3827:-282.31,0,-253.782	0/1:239:136,103:136:4821:103:3677:-259.178,0,-362.101	0/1:31:18,13:18:641:13:464:-32.7656,0,-48.6873	0/1:298:201,97:201:7159:97:3465:-222.354,0,-554.656	0/1:284:145,138:145:5115:138:4928:-358.24,0,-375.068	0/1:526:365,159:365:12940:159:5657:-351.149,0,-1006.32	0/1:226:105,121:105:3729:121:4308:-319.865,0,-267.779	0/1:142:48,94:48:1712:94:3368:-260.585,0,-111.619	0/1:154:61,92:61:2179:92:3281:-249.103,0,-149.924	0/1:333:151,181:151:5351:181:6462:-481.364,0,-381.105	0/1:110:48,61:48:1692:61:2168:-162.213,0,-119.374	0/1:150:70,79:70:2456:79:2803:-207.298,0,-176.079	0/1:167:73,94:73:2589:94:3336:-250.185,0,-182.987	0/1:65:30,35:30:1063:35:1243:-92.601,0,-76.4146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chr08	9653853	.	T	A	119134	PASS	AB=0.536467;ABP=17.2639;AC=166;AF=0.892473;AN=186;AO=5200;CIGAR=1X;DP=5780;DPB=5780;DPRA=0;EPP=10652.6;EPPR=1212.9;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.974;MQMR=59.9983;NS=93;NUMALT=1;ODDS=1.82069;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185322;QR=20589;RO=577;RPL=5125;RPP=10652.6;RPPR=1212.9;RPR=75;RUN=1;SAF=0;SAP=11294.7;SAR=5200;SRF=0;SRP=1255.95;SRR=577;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:84:0,84:0:0:84:2996:-269.871,-25.2865,0	1/1:93:1,92:1:36:92:3262:-290.203,-24.3975,0	1/1:130:0,130:0:0:130:4651:-418.752,-39.1339,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:32:0,32:0:0:32:1129:-101.917,-9.63296,0	1/1:97:0,97:0:0:97:3458:-311.432,-29.1999,0	1/1:69:0,69:0:0:69:2448:-220.566,-20.7711,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	1/1:56:0,56:0:0:56:1961:-176.762,-16.8577,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:57:0,57:0:0:57:2029:-182.811,-17.1587,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:71:0,71:0:0:71:2504:-225.553,-21.3731,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:104:0,104:0:0:104:3692:-332.481,-31.3071,0	1/1:59:0,59:0:0:59:2103:-189.538,-17.7608,0	1/1:69:0,69:0:0:69:2423:-218.325,-20.7711,0	1/1:72:0,72:0:0:72:2560:-230.648,-21.6742,0	0/1:96:45,51:45:1601:51:1808:-134.102,0,-115.479	1/1:48:0,48:0:0:48:1709:-154.095,-14.4494,0	0/1:172:79,93:79:2806:93:3323:-247.511,0,-201	1/1:103:0,103:0:0:103:3674:-330.844,-31.0061,0	0/1:22:11,11:11:396:11:383:-28.1806,0,-29.3601	1/1:157:0,157:0:0:157:5605:-504.571,-47.2617,0	1/1:109:3,106:3:108:106:3768:-329.244,-22.7371,0	0/1:50:28,22:28:1008:22:792:-56.5542,0,-75.9849	1/1:7:0,7:0:0:7:245:-22.3902,-2.10721,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:147:0,146:0:0:146:5207:-468.409,-43.9504,0	1/1:128:0,128:0:0:128:4548:-409.483,-38.5318,0	1/1:53:0,53:0:0:53:1859:-167.586,-15.9546,0	.:.:.:.:.:.:.:.	0/1:105:45,60:45:1612:60:2120:-159.458,0,-113.762	0/1:21:4,17:4:144:17:612:-49.0918,0,-6.99199	1/1:107:0,107:0:0:107:3834:-345.256,-32.2102,0	1/1:46:0,46:0:0:46:1629:-146.898,-13.8474,0	1/1:46:0,46:0:0:46:1641:-147.978,-13.8474,0	1/1:53:0,53:0:0:53:1883:-169.748,-15.9546,0	1/1:79:0,79:0:0:79:2834:-255.298,-23.7814,0	0/1:122:49,73:49:1756:73:2614:-198.782,0,-121.598	1/1:75:0,75:0:0:75:2671:-240.636,-22.5773,0	1/1:83:0,83:0:0:83:2940:-264.833,-24.9855,0	1/1:75:0,75:0:0:75:2677:-241.174,-22.5773,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:93:52,41:52:1856:41:1464:-104.06,0,-139.324	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:69:29,40:29:1025:40:1415:-106.875,0,-71.7896	1/1:29:0,29:0:0:29:1030:-93.013,-8.72987,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:89:1,88:1:36:88:3121:-277.518,-23.1934,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:110:0,110:0:0:110:3904:-351.555,-33.1133,0	1/1:119:0,118:0:0:118:4220:-379.621,-35.5215,0	0/1:74:30,44:30:1060:44:1572:-119.495,0,-73.4351	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0	1/1:70:0,70:0:0:70:2502:-225.432,-21.0721,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:54:0,54:0:0:54:1922:-173.255,-16.2556,0	1/1:67:0,67:0:0:67:2379:-214.367,-20.169,0	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	1/1:113:0,113:0:0:113:4041:-363.841,-34.0164,0	0/1:44:20,24:20:716:24:853:-63.8432,0,-51.5224	1/1:81:0,81:0:0:81:2898:-261.055,-24.3834,0	1/1:106:0,106:0:0:106:3796:-341.838,-31.9092,0	0/1:59:22,37:22:780:37:1332:-102.422,0,-52.7623	1/1:72:0,72:0:0:72:2567:-231.28,-21.6742,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:70:0,70:0:0:70:2507:-225.882,-21.0721,0	0/1:58:25,33:25:892:33:1181:-89.1321,0,-63.1399	1/1:80:0,80:0:0:80:2868:-258.356,-24.0824,0	1/1:81:0,81:0:0:81:2875:-258.981,-24.3834,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:108:0,108:0:0:108:3845:-346.246,-32.5112,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:51:31,20:31:1112:20:716:-49.4152,0,-85.0388	0/1:42:18,24:18:648:24:850:-64.1758,0,-46.0086	1/1:24:0,23:0:0:23:828:-74.4843,-6.92369,0	0/1:75:39,36:39:1392:36:1249:-90.1318,0,-103.002	0/1:56:36,20:36:1281:20:709:-47.2778,0,-98.7336	1/1:50:0,50:0:0:50:1761:-158.772,-15.0515,0	1/1:54:0,54:0:0:54:1922:-173.256,-16.2556,0
chr08	9653859	.	T	C	9630.29	PASS	AB=0.477273;ABP=8.53768;AC=20;AF=0.107527;AN=186;AO=594;CIGAR=1X;DP=5488;DPB=5488;DPRA=1.06753;EPP=1275.55;EPPR=10181;GTI=0;LEN=1;MEANALT=1.04167;MQM=59.9983;MQMR=59.9671;NS=93;NUMALT=1;ODDS=4.60553;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21231;QR=170312;RO=4889;RPL=592;RPP=1275.55;RPPR=10181;RPR=2;RUN=1;SAF=0;SAP=1292.86;SAR=594;SRF=0;SRP=10619.3;SRR=4889;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:77:77,0:77:2676:0:0:0,-23.1793,-241.082	0/0:84:83,0:83:2860:0:0:0,-24.9855,-257.278	0/0:123:123,0:123:4278:0:0:0,-37.0267,-385.2	0/0:39:39,0:39:1342:0:0:0,-11.7402,-121.074	0/0:31:31,0:31:1069:0:0:0,-9.33193,-96.5155	0/0:97:97,0:97:3373:0:0:0,-29.1999,-303.785	0/0:60:60,0:60:2082:0:0:0,-18.0618,-187.64	0/0:56:56,0:56:1923:0:0:0,-16.8577,-173.342	0/0:64:64,0:64:2237:0:0:0,-19.2659,-201.594	0/0:44:44,0:44:1549:0:0:0,-13.2453,-139.7	0/0:54:54,0:54:1904:0:0:0,-16.2556,-171.638	0/0:37:36,1:36:1276:1:36:0,-7.53983,-111.545	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/0:44:44,0:44:1544:0:0:0,-13.2453,-139.252	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/0:64:64,0:64:2256:0:0:0,-19.2659,-202.934	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/0:19:19,0:19:664:0:0:0,-5.71957,-60.0845	0/0:97:97,0:97:3387:0:0:0,-29.1999,-305.041	0/0:57:57,0:57:1971:0:0:0,-17.1587,-177.66	0/0:67:67,0:67:2316:0:0:0,-20.169,-208.696	0/0:65:65,0:65:2259:0:0:0,-19.5669,-203.569	0/1:96:51,45:51:1750:45:1616:-116.831,0,-128.878	0/0:47:47,0:47:1668:0:0:0,-14.1484,-150.407	0/1:177:94,83:94:3276:83:2964:-213.711,0,-241.777	0/0:95:94,0:94:3248:0:0:0,-28.2968,-292.262	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/0:157:157,0:157:5404:0:0:0,-47.2617,-486.494	0/0:104:101,3:101:3441:3:108:0,-21.2319,-299.826	0/1:51:22,29:22:742:29:1044:-78.9223,0,-51.7381	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:132:132,0:132:4604:0:0:0,-39.736,-414.53	0/0:120:120,0:120:4110:0:0:0,-36.1236,-370.086	0/0:46:46,0:46:1628:0:0:0,-13.8474,-146.809	.:.:.:.:.:.:.:.	0/1:105:58,47:58:1977:47:1688:-120.599,0,-146.588	0/1:22:18,4:18:613:4:144:-6.69096,0,-48.866	0/0:99:99,0:99:3338:0:0:0,-29.802,-300.636	0/0:47:47,0:47:1660:0:0:0,-14.1484,-149.688	0/0:38:38,0:38:1325:0:0:0,-11.4391,-119.548	0/0:54:54,0:54:1875:0:0:0,-16.2556,-169.023	0/0:68:68,0:68:2370:0:0:0,-20.47,-213.066	0/1:118:68,50:68:2329:50:1788:-125.681,0,-174.343	0/0:70:70,0:70:2430:0:0:0,-21.0721,-218.955	0/0:75:75,0:75:2611:0:0:0,-22.5772,-235.236	0/0:74:74,0:74:2593:0:0:0,-22.2762,-233.615	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:91:37,54:37:1282:54:1894:-143.341,0,-88.2828	0/0:46:45,0:45:1577:0:0:0,-13.5463,-141.859	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:68:39,29:39:1338:29:1044:-73.8048,0,-100.244	0/0:28:27,1:27:945:1:36:0,-4.83056,-81.764	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:36:36,0:36:1242:0:0:0,-10.8371,-112.078	0/0:85:83,1:83:2933:1:36:0,-22.0081,-260.646	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:99:99,0:99:3433:0:0:0,-29.802,-309.184	0/0:112:112,0:112:3909:0:0:0,-33.7154,-352.004	0/1:75:42,33:42:1466:33:1184:-84.2911,0,-109.653	0/0:47:47,0:47:1641:0:0:0,-14.1484,-147.976	0/0:103:103,0:103:3557:0:0:0,-31.0061,-320.341	0/0:62:62,0:62:2131:0:0:0,-18.6639,-192.055	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:52:52,0:52:1813:0:0:0,-15.6536,-163.436	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.55	0/1:16:11,5:11:388:5:180:-11.7356,0,-30.4409	0/0:105:105,0:105:3664:0:0:0,-31.6081,-329.96	0/1:44:24,20:24:843:20:709:-50.8894,0,-62.9345	0/0:76:76,0:76:2696:0:0:0,-22.8783,-242.886	0/0:103:102,0:102:3496:0:0:0,-30.7051,-314.638	0/1:57:34,23:34:1204:23:819:-56.8729,0,-91.5071	0/0:66:66,0:66:2306:0:0:0,-19.868,-207.799	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2579	0/0:63:63,0:63:2214:0:0:0,-18.9649,-199.522	0/1:59:32,27:32:1098:27:968:-69.6766,0,-81.3602	0/0:69:69,0:69:2426:0:0:0,-20.7711,-218.594	0/0:78:78,0:78:2729:0:0:0,-23.4803,-245.85	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.55	0/0:101:101,0:101:3565:0:0:0,-30.404,-321.061	0/0:39:39,0:39:1377:0:0:0,-11.7402,-124.227	0/1:53:22,31:22:780:31:1116:-84.7971,0,-54.5684	0/1:41:23,18:23:809:18:648:-46.3097,0,-60.7861	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:71:34,37:34:1208:37:1311:-96.9177,0,-87.653	0/1:57:20,37:20:708:37:1322:-102.123,0,-46.8869	0/0:46:46,0:46:1625:0:0:0,-13.8474,-146.537	0/0:51:51,0:51:1808:0:0:0,-15.3525,-163.002
chr08	9654056	.	G	A	14436.8	PASS	AB=0.495354;ABP=3.33312;AC=24;AF=0.129032;AN=186;AO=873;CIGAR=1X;DP=8450;DPB=8450;DPRA=1.00897;EPP=1898.71;EPPR=16445.4;GTI=3;LEN=1;MEANALT=1.07143;MQM=60;MQMR=59.988;NS=93;NUMALT=1;ODDS=1.44605;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31306;QR=271462;RO=7572;RPL=873;RPP=1898.71;RPPR=16445.4;RPR=0;RUN=1;SAF=0;SAP=1898.71;SAR=873;SRF=0;SRP=16445.4;SRR=7572;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/0:189:189,0:189:6760:0:0:0,-56.8947,-608.474	0/0:187:187,0:187:6700:0:0:0,-56.2926,-603.075	0/0:128:127,0:127:4560:0:0:0,-38.2308,-410.205	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/0:52:52,0:52:1841:0:0:0,-15.6536,-165.968	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.781	0/0:149:149,0:149:5333:0:0:0,-44.8535,-479.91	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:149:149,0:149:5344:0:0:0,-44.8535,-481.092	0/0:173:173,0:173:6216:0:0:0,-52.0782,-559.533	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.753	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:110:60,50:60:2137:50:1788:-128.089,0,-159.483	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/1:271:137,134:137:4908:134:4797:-350.305,0,-360.281	0/0:249:249,0:249:8956:0:0:0,-74.9565,-806.015	0/1:46:25,21:25:900:21:756:-54.5198,0,-67.4736	0/0:258:258,0:258:9256:0:0:0,-77.6657,-833.005	0/0:79:78,1:78:2788:1:36:0,-20.1831,-247.563	0/1:67:25,42:25:892:42:1500:-115.126,0,-60.4307	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:7:2,5:2:68:5:176:-14.0778,0,-4.3505	0/0:237:236,0:236:8452:0:0:0,-71.0431,-760.321	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.945	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:140:75,65:75:2692:65:2332:-167.995,0,-200.38	0/1:39:25,14:25:900:14:504:-33.9579,0,-69.5808	0/0:219:219,0:219:7868:0:0:0,-65.9256,-708.141	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/1:133:72,61:72:2580:61:2192:-157.508,0,-192.412	0/0:116:116,0:116:4168:0:0:0,-34.9195,-375.301	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.948	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.269	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:134:62,72:62:2216:72:2592:-193.19,0,-159.359	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:15:2,13:2:72:13:468:-37.9442,0,-2.32127	0/1:107:59,48:59:2116:48:1728:-123.595,0,-158.499	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.587	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.11	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:155:155,0:155:5548:0:0:0,-46.6596,-499.445	0/0:148:146,2:146:5240:2:72:0,-37.7157,-464.899	0/1:85:40,45:40:1436:45:1616:-120.142,0,-103.95	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:138:137,1:137:4901:1:36:0,-37.9439,-437.642	0/0:102:98,4:98:3528:4:144:0,-17.3914,-304.414	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:101:101,0:101:3636:0:0:0,-30.404,-327.443	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.845	0/1:79:38,40:38:1360:40:1432:-105.484,0,-98.9879	0/0:90:89,0:89:3180:0:0:0,-26.7917,-286.104	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946	0/1:85:40,45:40:1436:45:1601:-118.791,0,-103.95	0/0:89:88,1:88:3136:1:32:0,-23.5924,-279.268	.:.:.:.:.:.:.:.	0/0:112:112,0:112:4008:0:0:0,-33.7154,-360.909	0/1:75:41,34:41:1472:34:1216:-87.1693,0,-110.199	0/0:273:271,2:271:9728:2:72:0,-75.3445,-868.628	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:146:146,0:146:5240:0:0:0,-43.9504,-471.736	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:83:38,45:38:1360:45:1616:-120.745,0,-97.7151	0/1:100:60,40:60:2135:40:1440:-99.7947,0,-162.315	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:61:36,25:36:1296:25:900:-62.9582,0,-98.5811	0/1:77:26,50:26:932:50:1796:-138.684,0,-60.9608	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:148:148,0:148:5308:0:0:0,-44.5524,-477.853
chr08	9656628	.	C	T	476253	PASS	AB=0.475899;ABP=48.3323;AC=166;AF=0.882979;AN=188;AO=21713;CIGAR=1X;DP=26463;DPB=26463;DPRA=0;EPP=46935.3;EPPR=10252.4;GTI=7;LEN=1;MEANALT=1.08511;MQM=59.9889;MQMR=59.9857;NS=94;NUMALT=1;ODDS=0.181632;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=777619;QR=169597;RO=4740;RPL=25;RPP=46935.3;RPPR=10252.4;RPR=21688;RUN=1;SAF=21713;SAP=47152.2;SAR=0;SRF=4740;SRP=10295.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	1/1:95:0,95:0:0:95:3401:-306.303,-28.5979,0	1/1:119:1,118:1:36:118:4228:-377.102,-32.2243,0	1/1:258:0,257:0:0:257:9225:-829.855,-77.3647,0	1/1:89:0,89:0:0:89:3161:-284.713,-26.7917,0	1/1:83:0,83:0:0:83:2971:-267.622,-24.9855,0	1/1:59:0,59:0:0:59:2109:-190.078,-17.7608,0	1/1:213:0,213:0:0:213:7602:-684.216,-64.1194,0	1/1:147:0,147:0:0:147:5255:-473.087,-44.2514,0	1/1:98:0,98:0:0:98:3502:-315.39,-29.5009,0	1/1:299:1,298:1:36:298:10700:-959.298,-86.4097,0	1/1:72:0,72:0:0:72:2566:-231.189,-21.6742,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:38:0,38:0:0:38:1351:-121.889,-11.4391,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:156:0,156:0:0:156:5587:-502.951,-46.9607,0	1/1:288:0,288:0:0:288:10288:-925.842,-86.6966,0	1/1:137:0,137:0:0:137:4902:-441.33,-41.2411,0	1/1:168:0,168:0:0:168:6044:-544.06,-50.573,0	1/1:147:0,147:0:0:147:5206:-468.679,-44.2514,0	0/1:96:42,54:42:1508:54:1928:-144.897,0,-107.116	1/1:113:0,113:0:0:113:4050:-364.686,-34.0164,0	0/1:304:166,138:166:5913:138:4900:-349.637,0,-440.768	1/1:239:0,239:0:0:239:8535:-768.146,-71.9462,0	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	1/1:243:1,242:1:36:242:8686:-778.131,-69.552,0	1/1:174:7,167:7:248:167:5946:-512.584,-29.715,0	0/1:115:70,45:70:2516:45:1616:-111.112,0,-192.045	0/1:1132:545,587:545:19478:587:21016:-1550.14,0,-1411.79	1/1:1333:4,1329:4:144:1329:47589:-4268.03,-387.959,0	0/1:930:440,490:440:15761:490:17548:-1298.97,0,-1138.22	1/1:1750:3,1747:3:104:1747:62533:-5615.95,-517.1,0	0/1:2266:1173,1089:1173:41990:1089:39027:-2829.87,0,-3096.14	1/1:145:0,145:0:0:145:5208:-468.857,-43.6494,0	1/1:125:0,125:0:0:125:4467:-402.2,-37.6288,0	1/1:353:0,353:0:0:353:12657:-1138.83,-106.264,0	1/1:589:0,589:0:0:589:21106:-1899,-177.307,0	0/1:263:144,119:144:5147:119:4268:-305.127,0,-384.201	0/1:213:114,99:114:4100:99:3554:-255.947,0,-305.064	1/1:115:0,115:0:0:115:4136:-372.422,-34.6185,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:139:0,139:0:0:139:4975:-447.897,-41.8432,0	1/1:204:0,204:0:0:204:7294:-656.508,-61.4101,0	0/1:193:107,86:107:3831:86:3069:-218.339,0,-286.879	1/1:115:0,115:0:0:115:4107:-369.813,-34.6185,0	1/1:131:0,131:0:0:131:4712:-424.237,-39.4349,0	1/1:100:0,100:0:0:100:3584:-322.767,-30.103,0	1/1:1427:0,1427:0:0:1427:51121:-4599.08,-429.57,0	0/1:260:140,120:140:4973:120:4320:-310.706,0,-369.451	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:698:368,330:368:13146:330:11797:-851.044,0,-972.824	0/1:187:104,83:104:3711:83:2956:-209.98,0,-277.9	1/1:44:1,43:1:36:43:1548:-136.015,-9.64705,0	1/1:1463:3,1459:3:108:1459:52274:-4692.75,-430.308,0	1/1:711:1,710:1:36:710:25461:-2287.16,-210.434,0	1/1:72:0,72:0:0:72:2592:-233.528,-21.6742,0	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	1/1:672:1,671:1:36:671:24053:-2160.51,-198.694,0	1/1:101:0,101:0:0:101:3625:-326.453,-30.404,0	1/1:191:6,185:6:216:185:6616:-575.726,-37.7062,0	0/1:69:27,42:27:972:42:1512:-115.604,0,-67.0268	1/1:138:0,138:0:0:138:4960:-446.547,-41.5421,0	1/1:171:1,170:1:36:170:6081:-543.791,-47.8779,0	1/1:229:0,229:0:0:229:8206:-738.548,-68.9359,0	1/1:333:1,331:1:36:331:11879:-1065.44,-96.6286,0	1/1:80:0,80:0:0:80:2863:-257.907,-24.0824,0	1/1:38:0,38:0:0:38:1353:-122.068,-11.4391,0	0/1:972:571,401:571:20425:401:14376:-1000.98,0,-1545.15	1/1:179:0,178:0:0:178:6349:-571.287,-53.5833,0	0/1:104:60,44:60:2135:44:1553:-108.753,0,-161.11	1/1:172:0,172:0:0:172:6172:-555.447,-51.7772,0	1/1:214:0,214:0:0:214:7688:-691.951,-64.4204,0	0/1:129:65,64:65:2327:64:2299:-168.338,0,-170.856	1/1:156:2,154:2:72:154:5521:-490.175,-40.124,0	1/1:1301:1,1299:1:36:1299:46520:-4181.47,-388.026,0	1/1:152:0,152:0:0:152:5410:-487.031,-45.7566,0	0/1:120:67,52:67:2396:52:1868:-132.217,0,-179.715	1/1:228:0,228:0:0:228:8162:-734.591,-68.6348,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:53:1,52:1:36:52:1860:-164.084,-12.3589,0	1/1:39:0,39:0:0:39:1389:-125.307,-11.7402,0	1/1:97:0,97:0:0:97:3492:-314.489,-29.1999,0	1/1:18:1,17:1:36:17:597:-50.4587,-1.82027,0	0/1:71:37,34:37:1328:34:1224:-89.0939,0,-98.4491	0/1:49:29,20:29:1040:20:716:-50.0172,0,-79.1639	1/1:266:0,266:0:0:266:9522:-856.935,-80.074,0	0/1:717:369,348:369:13244:348:12444:-903.954,0,-975.917	0/1:76:55,21:55:1972:21:756:-45.4889,0,-154.877	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:84:1,83:1:36:83:2979:-264.744,-21.6882,0
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chr08	9657861	.	T	C	11632.4	PASS	AB=0.494101;ABP=3.4458;AC=23;AF=0.123656;AN=186;AO=725;CIGAR=1X;DP=6764;DPB=6764;DPRA=1.00538;EPP=1577.33;EPPR=13107.8;GTI=3;LEN=1;MEANALT=1;MQM=59.4621;MQMR=59.9328;NS=93;NUMALT=1;ODDS=1.26333;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25684;QR=215234;RO=6039;RPL=0;RPP=1577.33;RPPR=13107.8;RPR=725;RUN=1;SAF=0;SAP=1577.33;SAR=725;SRF=0;SRP=13116.5;SRR=6039;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1122:0:0:0,-9.63296,-101.283	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:91:91,0:91:3233:0:0:0,-27.3937,-291.174	0/0:172:172,0:172:6089:0:0:0,-51.7772,-548.097	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:47:47,0:47:1660:0:0:0,-14.1484,-149.685	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.516	0/0:87:87,0:87:3104:0:0:0,-26.1896,-279.572	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.488	0/0:79:79,0:79:2797:0:0:0,-23.7814,-251.968	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/0:89:89,0:89:3160:0:0:0,-26.7917,-284.616	0/0:102:102,0:102:3644:0:0:0,-30.7051,-328.152	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:70:70,0:70:2481:0:0:0,-21.0721,-223.543	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.772	0/0:33:33,0:33:1152:0:0:0,-9.93399,-103.983	0/0:43:43,0:43:1506:0:0:0,-12.9443,-135.823	0/0:57:56,1:56:1995:1:36:0,-13.5604,-176.225	0/0:99:99,0:99:3512:0:0:0,-29.802,-316.29	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:102:102,0:102:3610:0:0:0,-30.7051,-325.081	0/1:56:41,15:41:1457:15:532:-31.3308,0,-114.566	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.5184	0/1:183:86,97:86:3057:97:3451:-255.651,0,-220.269	0/0:127:127,0:127:4533:0:0:0,-38.2308,-408.118	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/0:194:194,0:194:6937:0:0:0,-58.3998,-624.309	0/0:96:95,1:95:3362:1:36:0,-25.3006,-299.198	0/1:98:43,55:43:1527:55:1945:-145.683,0,-108.221	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:1,3:1:36:3:104:-8.4973,0,-2.39415	0/0:190:190,0:190:6784:0:0:0,-57.1957,-610.634	0/0:112:110,2:110:3913:2:72:0,-26.8786,-345.395	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	.:.:.:.:.:.:.:.	0/1:57:35,22:35:1252:22:784:-53.7252,0,-95.8245	0/1:43:22,21:22:769:21:737:-53.6999,0,-56.5843	0/0:130:130,0:130:4645:0:0:0,-39.1339,-418.207	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.97	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:91:44,47:44:1572:47:1665:-122.739,0,-114.373	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:111:111,0:111:3971:0:0:0,-33.4143,-356.954	0/0:104:104,0:104:3702:0:0:0,-31.3071,-333.378	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:77:33,44:33:1176:44:1563:-117.773,0,-82.9685	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:88:47,41:47:1688:41:1446:-103.938,0,-125.716	0/0:17:16,1:16:572:1:36:0,-1.51923,-48.2152	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.88	0/0:134:132,2:132:4728:2:72:0,-33.5013,-418.842	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:203:203,0:203:7253:0:0:0,-61.1091,-652.823	0/0:125:123,2:123:4408:2:72:0,-30.792,-390.055	0/1:81:44,37:44:1580:37:1300:-92.9104,0,-117.978	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:109:109,0:109:3843:0:0:0,-32.8123,-346.066	0/0:100:100,0:100:3557:0:0:0,-30.103,-320.338	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:24:19,5:19:680:5:180:-9.32734,0,-54.3044	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.722	0/1:42:25,17:25:862:17:595:-41.1295,0,-65.2475	0/0:160:160,0:160:5699:0:0:0,-48.1648,-512.875	0/0:125:125,0:125:4457:0:0:0,-37.6287,-401.299	0/1:91:43,48:43:1504:48:1703:-126.136,0,-108.257	0/0:132:131,1:131:4688:1:36:0,-36.1377,-418.483	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.391	0/1:69:31,38:31:1116:38:1364:-102.27,0,-79.9806	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.357	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.704	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.22	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:117:117,0:117:4177:0:0:0,-35.2205,-375.934	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:68:32,36:32:1148:36:1272:-93.358,0,-83.1598	0/1:71:29,42:29:1032:42:1485:-112.566,0,-71.8203	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:195:110,85:110:3931:85:3002:-211.686,0,-295.282	0/1:80:29,51:29:998:51:1804:-138.549,0,-66.0433	0/0:138:138,0:138:4929:0:0:0,-41.5421,-443.76	0/0:97:97,0:97:3453:0:0:0,-29.1999,-310.982
chr08	10195498	.	T	A	10880.1	PASS	AB=0.481157;ABP=7.5929;AC=24;AF=0.12766;AN=188;AO=732;CIGAR=1X;DP=6573;DPB=6573;DPRA=1.2179;EPP=1575.2;EPPR=12504.8;GTI=3;LEN=1;MEANALT=1.0625;MQM=40.9413;MQMR=59.6704;NS=94;NUMALT=1;ODDS=0.536732;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25989;QR=208543;RO=5837;RPL=2;RPP=1575.2;RPPR=12504.8;RPR=730;RUN=1;SAF=732;SAP=1592.53;SAR=0;SRF=5837;SRP=12677.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.98	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.745	0/0:136:136,0:136:4884:0:0:0,-40.9401,-439.686	0/0:146:144,2:144:5151:2:61:0,-38.2787,-457.799	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.127	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.743	0/0:54:53,0:53:1900:0:0:0,-15.9546,-170.134	0/0:92:92,0:92:3281:0:0:0,-27.6948,-295.493	0/0:86:83,3:83:2964:3:108:0,-16.105,-257.19	0/0:42:42,0:42:1489:0:0:0,-12.6433,-133.672	0/0:25:24,0:24:864:0:0:0,-7.22472,-77.723	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.788	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.577	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.274	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.314	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:15:15,0:15:532:0:0:0,-4.51545,-47.9418	0/0:113:113,0:113:4032:0:0:0,-34.0164,-363.058	0/0:94:94,0:94:3356:0:0:0,-28.2968,-302.207	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.48	0/0:78:78,0:78:2763:0:0:0,-23.4803,-248.883	0/1:58:24,34:24:860:34:1216:-87.5674,0,-60.2621	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.112	0/1:242:115,127:115:4128:127:4511:-323.824,0,-298.849	0/0:152:152,0:152:5410:0:0:0,-45.7566,-486.749	0/1:19:10,9:10:360:9:324:-22.4174,0,-27.0247	0/0:240:240,0:240:8558:0:0:0,-72.2472,-770.033	0/0:107:106,1:106:3751:1:32:0,-29.3111,-334.755	0/1:83:50,33:50:1777:33:1165:-75.2392,0,-135.086	0/1:7:3,4:3:108:4:144:-10.6744,0,-7.96796	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	1/1:1:0,1:0:0:1:36:-3.4807,-0.30103,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:17:8,9:8:288:9:316:-22.53,0,-21.1407	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.4	0/0:126:126,0:126:4496:0:0:0,-37.9298,-404.555	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2633	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:109:57,52:57:2048:52:1864:-127.66,0,-151.73	0/1:9:4,5:4:144:5:173:-12.3459,0,-10.5913	0/0:194:194,0:194:6922:0:0:0,-58.3998,-622.944	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.627	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.747	0/0:94:94,0:94:3360:0:0:0,-28.2968,-302.565	0/1:127:60,67:60:2148:67:2393:-170.298,0,-155.346	0/0:83:83,0:83:2948:0:0:0,-24.9855,-265.545	0/0:126:126,0:126:4490:0:0:0,-37.9298,-404.165	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.848	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.8236	0/1:147:81,66:81:2903:66:2353:-159.241,0,-217.124	0/0:80:80,0:80:2846:0:0:0,-24.0824,-255.882	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:112:60,52:60:2135:52:1853:-125.665,0,-158.702	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.056	0/0:71:70,1:70:2516:1:36:0,-17.8704,-223.184	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:139:139,0:139:4954:0:0:0,-41.8432,-445.99	0/0:153:150,2:150:5335:2:72:0,-39.4579,-473.596	0/1:77:46,31:46:1652:31:1071:-68.9326,0,-125.77	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.139	0/0:100:100,0:100:3558:0:0:0,-30.103,-320.187	0/0:118:117,1:117:4208:1:36:0,-32.067,-375.44	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6011	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.167	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.385	0/1:27:13,14:13:460:14:496:-35.0369,0,-33.6076	0/0:102:102,0:102:3639:0:0:0,-30.7051,-326.764	0/1:32:20,12:20:716:12:428:-28.0249,0,-55.1348	0/0:196:196,0:196:7017:0:0:0,-59.0019,-631.238	0/0:136:136,0:136:4869:0:0:0,-40.9401,-438.346	0/1:175:82,93:82:2944:93:3276:-230.85,0,-212.509	0/0:68:67,1:67:2404:1:36:0,-16.9893,-213.129	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.139	0/0:89:87,2:87:3124:2:72:0,-20.2281,-274.807	0/1:105:61,44:61:2188:44:1572:-105.747,0,-165.574	0/0:142:142,0:142:5043:0:0:0,-42.7463,-453.975	0/0:33:33,0:33:1179:0:0:0,-9.93399,-106.41	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9342	0/0:60:59,1:59:2107:1:36:0,-14.5591,-186.19	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:19:11,8:11:383:8:288:-19.6895,0,-29.0837	0/1:26:15,11:15:540:11:396:-26.9802,0,-41.1098	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7664	0/1:73:44,28:44:1580:28:992:-63.0902,0,-120.441	0/1:22:6,16:6:216:16:576:-44.0791,0,-13.1655	0/0:151:150,1:150:5330:1:21:0,-43.3689,-477.71	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776
chr08	10195509	.	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chr08	10195527	.	T	G	127873	PASS	AB=0.517218;ABP=6.82394;AC=164;AF=0.87234;AN=188;AO=5813;CIGAR=1X;DP=6587;DPB=6587;DPRA=47.7101;EPP=12625.8;EPPR=1679.39;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.6276;MQMR=42.092;NS=94;NUMALT=1;ODDS=0.716901;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=207114;QR=27482;RO=772;RPL=5813;RPP=12625.8;RPPR=1679.39;RPR=0;RUN=1;SAF=5813;SAP=12625.8;SAR=0;SRF=772;SRP=1679.39;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53:0:0:53:1892:-170.556,-15.9546,0	1/1:50:0,50:0:0:50:1755:-158.124,-15.0515,0	1/1:141:0,141:0:0:141:5037:-453.442,-42.4452,0	1/1:147:0,147:0:0:147:5222:-469.828,-44.2514,0	1/1:70:2,68:2:72:68:2413:-210.58,-14.2354,0	1/1:33:2,31:2:72:31:1116:-93.9116,-3.09727,0	1/1:54:0,54:0:0:54:1921:-173.157,-16.2556,0	1/1:87:1,86:1:36:86:3065:-272.472,-22.5913,0	1/1:82:3,79:3:108:79:2836:-245.686,-14.9009,0	1/1:43:0,43:0:0:43:1523:-136.986,-12.9443,0	1/1:26:0,26:0:0:26:927:-82.9658,-7.82678,0	1/1:50:1,49:1:27:49:1739:-154.084,-12.3522,0	1/1:37:0,37:0:0:37:1319:-119.004,-11.1381,0	1/1:42:0,42:0:0:42:1483:-133.746,-12.6433,0	1/1:25:0,25:0:0:25:900:-81.314,-7.52575,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:16:0,16:0:0:16:563:-50.7246,-4.81648,0	1/1:110:1,109:1:36:109:3895:-347.139,-29.515,0	1/1:95:2,93:2:72:93:3313:-291.506,-21.7611,0	1/1:127:0,127:0:0:127:4521:-407.055,-38.2308,0	1/1:81:1,80:1:36:80:2858:-253.833,-20.7852,0	0/1:61:33,28:33:1188:28:1004:-72.3049,0,-84.1301	1/1:44:0,44:0:0:44:1559:-140.586,-13.2453,0	0/1:241:127,114:127:4556:114:4079:-294.743,0,-328.211	1/1:163:1,162:1:36:162:5785:-516.677,-45.4696,0	0/1:20:9,11:9:324:11:392:-29.5995,0,-22.1164	1/1:242:1,240:1:36:240:8519:-763.118,-69.2349,0	1/1:108:1,107:1:36:107:3805:-339.573,-29.4567,0	0/1:79:30,49:30:1072:49:1711:-130.355,0,-68.7766	0/1:7:4,3:4:144:3:108:-7.96796,0,-10.6744	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.29777	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:16:8,8:8:284:8:288:-21.4418,0,-20.2895	1/1:83:0,83:0:0:83:2956:-266.243,-24.9855,0	1/1:121:0,121:0:0:121:4319:-388.631,-36.4246,0	1/1:28:0,28:0:0:28:1004:-90.6677,-8.42884,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:112:53,59:53:1893:59:2124:-157.663,0,-129.184	0/1:9:5,4:5:176:4:144:-10.5913,0,-12.4455	1/1:200:0,200:0:0:200:7096:-638.614,-60.206,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:17:0,17:0:0:17:604:-54.6883,-5.11751,0	1/1:101:1,100:1:32:100:3545:-315.355,-27.2047,0	1/1:94:5,89:5:176:89:3164:-268.771,-12.1118,0	0/1:124:65,59:65:2287:59:2097:-151.531,0,-162.748	1/1:85:0,85:0:0:85:3020:-272.026,-25.5876,0	1/1:123:0,123:0:0:123:4391:-395.337,-37.0267,0	1/1:137:2,135:2:72:135:4840:-428.904,-34.4044,0	1/1:17:0,17:0:0:17:604:-54.5832,-5.11751,0	0/1:144:66,78:66:2363:78:2800:-208.891,0,-161.392	1/1:84:2,82:2:68:82:2916:-255.942,-18.8288,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.4807	0/1:109:53,56:53:1876:56:2000:-147.46,0,-129.308	1/1:18:1,17:1:36:17:608:-51.4537,-1.82027,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:93:0,93:0:0:93:3328:-298.946,-27.9958,0	1/1:71:1,70:1:36:70:2504:-222.105,-17.8704,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:136:0,136:0:0:136:4845:-436.191,-40.9401,0	1/1:150:6,144:6:216:144:5113:-440.677,-25.5416,0	0/1:80:33,47:33:1152:47:1672:-126.666,0,-74.9161	1/1:64:2,62:2:72:62:2216:-192.854,-12.4292,0	1/1:99:2,97:2:72:97:3467:-305.395,-22.9652,0	1/1:120:1,119:1:36:119:4260:-380.119,-32.6691,0	1/1:22:0,22:0:0:22:775:-70.0661,-6.62266,0	1/1:63:1,62:1:32:62:2222:-197.033,-15.7656,0	1/1:34:0,34:0:0:34:1197:-108.032,-10.235,0	0/1:26:13,13:13:464:13:464:-34.2707,0,-32.497	1/1:98:3,95:3:104:95:3371:-292.92,-19.7981,0	0/1:32:12,20:12:424:20:720:-55.4958,0,-27.7232	1/1:198:1,196:1:36:196:6981:-624.633,-56.0645,0	1/1:138:1,137:1:36:137:4907:-438.168,-37.9439,0	0/1:179:95,84:95:3365:84:2977:-214.24,0,-237.772	1/1:70:3,67:3:108:67:2384:-204.847,-11.1067,0	1/1:9:0,9:0:0:9:324:-29.5025,-2.70927,0	1/1:91:2,89:2:72:89:3180:-279.843,-20.8302,0	0/1:102:45,57:45:1612:57:2031:-152.353,0,-109.358	1/1:140:2,138:2:72:138:4915:-435.622,-35.3075,0	1/1:33:0,33:0:0:33:1160:-104.701,-9.93399,0	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	1/1:15:0,15:0:0:15:536:-48.5725,-4.51545,0	1/1:60:1,59:1:32:59:2098:-185.773,-14.9032,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:19:8,11:8:284:11:396:-30.2632,0,-19.3864	0/1:23:11,12:11:396:12:428:-31.9351,0,-27.8833	1/1:19:0,19:0:0:19:676:-61.1646,-5.71957,0	0/1:76:29,47:29:1035:47:1680:-128.589,0,-65.8285	0/1:22:16,6:16:572:6:216:-13.1655,0,-43.7673	1/1:151:0,151:0:0:151:5364:-482.493,-45.4555,0	1/1:44:0,44:0:0:44:1576:-142.131,-13.2453,0
chr08	10222408	.	A	G	12998.4	PASS	AB=0.518097;ABP=7.25428;AC=22;AF=0.117021;AN=188;AO=782;CIGAR=1X;DP=7018;DPB=7018;DPRA=1.04096;EPP=1701.1;EPPR=13540;GTI=0;LEN=1;MEANALT=1.04;MQM=59.9629;MQMR=59.9705;NS=94;NUMALT=1;ODDS=9.07156;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27900;QR=223480;RO=6234;RPL=0;RPP=1701.1;RPPR=13540;RPR=782;RUN=1;SAF=782;SAP=1701.1;SAR=0;SRF=6234;SRP=13540;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:97:96,0:96:3444:0:0:0,-28.8989,-309.813	0/0:182:181,1:181:6504:1:36:0,-51.1892,-581.843	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.165	0/0:105:105,0:105:3719:0:0:0,-31.6081,-334.878	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.607	0/0:64:64,0:64:2266:0:0:0,-19.2659,-204.199	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:97:97,0:97:3492:0:0:0,-29.1999,-314.489	0/0:69:69,0:69:2469:0:0:0,-20.7711,-222.462	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:73:73,0:73:2613:0:0:0,-21.9752,-235.416	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.728	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:41:26,15:26:936:15:517:-34.5124,0,-72.2172	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.946	0/1:166:76,90:76:2724:90:3201:-238.34,0,-195.432	0/0:153:153,0:153:5469:0:0:0,-46.0576,-492.337	0/1:19:13,6:13:468:6:216:-14.0482,0,-36.7401	0/0:151:151,0:151:5412:0:0:0,-45.4555,-487.209	0/0:113:111,2:111:3992:2:72:0,-27.1797,-352.631	0/1:87:46,41:46:1648:41:1468:-106.225,0,-122.419	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:52:10,41:10:360:41:1453:-115.352,0,-17.0319	0/0:175:175,0:175:6264:0:0:0,-52.6802,-563.854	0/0:128:128,0:128:4600:0:0:0,-38.5318,-414.162	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:72:42,30:42:1512:30:1080:-75.8382,0,-114.7	0/1:29:10,19:10:356:19:684:-53.1605,0,-23.6514	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:72:72,0:72:2577:0:0:0,-21.6742,-232.177	0/0:160:160,0:160:5736:0:0:0,-48.1648,-516.356	0/0:152:152,0:152:5422:0:0:0,-45.7566,-488.108	0/1:137:74,63:74:2664:63:2260:-162.422,0,-197.987	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:86:43,43:43:1529:43:1540:-113.004,0,-111.822	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:27:11,16:11:396:16:576:-44.0472,0,-27.8549	0/1:101:51,50:51:1832:50:1746:-127.012,0,-134.757	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:127:127,0:127:4564:0:0:0,-38.2308,-410.924	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:130:130,0:130:4656:0:0:0,-39.1339,-419.104	0/0:135:129,6:129:4623:6:212:0,-21.2143,-396.807	0/1:51:29,22:29:1044:22:788:-55.8923,0,-78.9223	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.329	0/0:101:101,0:101:3636:0:0:0,-30.404,-327.443	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:31:10,21:10:360:21:748:-58.3134,0,-23.4124	0/0:196:196,0:196:7037:0:0:0,-59.0019,-633.359	0/1:63:33,30:33:1184:30:1065:-77.1949,0,-87.9034	0/0:108:108,0:108:3884:0:0:0,-32.5112,-349.753	0/0:81:81,0:81:2889:0:0:0,-24.3834,-260.245	0/1:87:39,48:39:1385:48:1728:-129.616,0,-98.7572	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:16:16,0:16:553:0:0:0,-4.81648,-50.094	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/1:68:35,33:35:1256:33:1184:-86.3983,0,-92.8752	0/0:148:148,0:148:5293:0:0:0,-44.5524,-476.493	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:66:36,30:36:1292:30:1080:-77.6453,0,-96.7158	0/1:82:49,33:49:1760:33:1180:-81.8236,0,-133.999	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:135:59,76:59:2116:76:2713:-203.773,0,-150.07	0/1:60:14,46:14:504:46:1637:-129.555,0,-27.6363	0/0:95:95,0:95:3389:0:0:0,-28.5978,-305.224	0/0:106:106,0:106:3789:0:0:0,-31.9092,-341.202
chr08	10222597	.	CACG	GACA,GACG	172690	PASS	AB=0.481667,0.513333;ABP=8.26526,5.78978;AC=162,24;AF=0.870968,0.129032;AN=186;AO=7017,934;CIGAR=1X2M1X,1X3M;DP=7997;DPB=7998.25;DPRA=86.913,0.97487;EPP=15240.2,2031.17;EPPR=5.18177;GTI=3;LEN=4,1;MEANALT=1.75,2.37037;MQM=59.9383,59.9507;MQMR=60;NS=93;NUMALT=2;ODDS=1.87103;PAIRED=0,0;PAIREDR=0;PAO=5,0;PQA=180,0;PQR=0;PRO=0;QA=245053,33249;QR=28;RO=1;RPL=0,0;RPP=15240.2,2031.17;RPPR=5.18177;RPR=7017,934;RUN=1,1;SAF=7017,934;SAP=15240.2,2031.17;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32,0:0:0:32,0:1092,0:-98.5819,-9.63296,0,-98.5819,-9.63296,-98.5819	1/1:106:0,106,0:0:0:106,0:3721,0:-335.097,-31.9092,0,-335.097,-31.9092,-335.097	1/1:100:0,100,0:0:0:100,0:3455,0:-310.978,-30.103,0,-310.978,-30.103,-310.978	1/1:130:0,130,0:0:0:130,0:4563,0:-410.483,-39.1339,0,-410.483,-39.1339,-410.483	1/1:64:0,62,0:0:0:62,0:2173,0:-195.478,-18.6639,0,-195.478,-18.6639,-195.478	1/1:33:0,32,0:0:0:32,0:1124,0:-101.116,-9.63296,0,-101.116,-9.63296,-101.116	1/1:111:0,110,0:0:0:110,0:3811,0:-342.833,-33.1133,0,-342.833,-33.1133,-342.833	1/1:140:0,139,0:0:0:139,0:4852,0:-436.482,-41.8432,0,-436.482,-41.8432,-436.482	1/1:39:0,38,0:0:0:38,0:1319,0:-118.649,-11.4391,0,-118.649,-11.4391,-118.649	1/1:117:0,117,0:0:0:117,0:4104,0:-369.551,-35.2205,0,-369.551,-35.2205,-369.551	1/1:81:0,81,0:0:0:81,0:2857,0:-257.37,-24.3834,0,-257.37,-24.3834,-257.37	1/1:70:0,69,0:0:0:69,0:2418,0:-217.518,-20.7711,0,-217.518,-20.7711,-217.518	1/1:54:0,54,0:0:0:54,0:1911,0:-172.267,-16.2556,0,-172.267,-16.2556,-172.267	1/1:72:0,72,0:0:0:72,0:2528,0:-227.754,-21.6742,0,-227.754,-21.6742,-227.754	1/1:65:0,64,0:0:0:64,0:2274,0:-204.622,-19.2659,0,-204.622,-19.2659,-204.622	1/1:70:0,70,0:0:0:70,0:2461,0:-221.745,-21.0721,0,-221.745,-21.0721,-221.745	1/1:77:0,77,0:0:0:77,0:2739,0:-246.754,-23.1793,0,-246.754,-23.1793,-246.754	1/1:69:0,69,0:0:0:69,0:2434,0:-219.316,-20.7711,0,-219.316,-20.7711,-219.316	1/1:51:0,50,0:0:0:50,0:1770,0:-159.223,-15.0515,0,-159.223,-15.0515,-159.223	1/1:246:0,243,0:0:0:243,0:8360,0:-752.164,-73.1503,0,-752.164,-73.1503,-752.164	1/1:131:0,129,0:0:0:129,0:4541,0:-408.524,-38.8329,0,-408.524,-38.8329,-408.524	1/1:66:0,64,0:0:0:64,0:2218,0:-199.583,-19.2659,0,-199.583,-19.2659,-199.583	1/1:40:0,40,0:0:0:40,0:1394,0:-125.756,-12.0412,0,-125.756,-12.0412,-125.756	1/2:49:0,28,21:0:0:28,21:963,741:-138.891,-60.69,-52.2611,-78.5496,0,-72.228	1/1:53:0,52,0:0:0:52,0:1814,0:-163.259,-15.6536,0,-163.259,-15.6536,-163.259	1/2:265:0,117,147:0:0:117,147:4099,5219:-758.741,-425.217,-389.996,-333.526,0,-289.275	1/1:167:0,166,0:0:0:166,0:5776,0:-519.272,-49.971,0,-519.272,-49.971,-519.272	1/2:42:0,24,18:0:0:24,18:834,648:-121.03,-53.2333,-46.0086,-68.1511,0,-62.7326	1/1:186:0,184,0:0:0:184,0:6401,0:-575.837,-55.3895,0,-575.837,-55.3895,-575.837	1/1:118:0,111,5:0:0:111,5:3847,176:-346.091,-33.4143,0,-331.763,-19.0528,-330.258	1/2:74:0,49,23:0:0:49,23:1713,828:-207.018,-67.6663,-52.9158,-139.453,0,-132.53	1/2:9:0,5,4:0:0:5,4:179,144:-26.7058,-12.1095,-10.6043,-14.9552,0,-13.7511	1/1:11:0,11,0:0:0:11,0:384,0:-34.8947,-3.31133,0,-34.8947,-3.31133,-34.8947	2/2:1:0,0,1:0:0:0,1:0,32:-3.19931,-3.19931,-3.19931,-0.30103,-0.30103,0	1/1:12:0,12,0:0:0:12,0:410,0:-37.2272,-3.61236,0,-37.2272,-3.61236,-37.2272	1/2:11:0,7,4:0:0:7,4:239,144:-31.492,-12.1095,-10.0023,-19.7356,0,-18.5315	1/1:200:0,200,0:0:0:200,0:6970,0:-626.551,-60.206,0,-626.551,-60.206,-626.551	1/1:151:0,148,2:0:0:148,2:5114,72:-460.096,-44.5524,0,-454.221,-38.6044,-453.619	1/1:71:0,71,0:0:0:71,0:2509,0:-226.064,-21.3731,0,-226.064,-21.3731,-226.064	.:.:.:.:.:.:.:.	1/2:129:0,62,67:0:0:62,67:2147,2385:-369.221,-194.737,-176.073,-174.835,0,-154.666	1/2:48:0,25,23:0:0:25,23:858,824:-137.186,-67.5596,-60.0339,-69.9769,0,-63.0532	1/1:89:0,89,0:0:0:89,0:3129,0:-281.839,-26.7917,0,-281.839,-26.7917,-281.839	1/1:70:0,69,0:0:0:69,0:2436,0:-218.578,-20.7711,0,-218.578,-20.7711,-218.578	1/1:67:0,67,0:0:0:67,0:2316,0:-208.698,-20.169,0,-208.698,-20.169,-208.698	1/1:80:0,80,0:0:0:80,0:2760,0:-248.646,-24.0824,0,-248.646,-24.0824,-248.646	1/1:127:0,127,0:0:0:127,0:4432,0:-399.059,-38.2308,0,-399.059,-38.2308,-399.059	1/2:133:0,63,70:0:0:63,70:2231,2505:-386.364,-204.629,-185.664,-182.09,0,-161.018	1/1:111:0,111,0:0:0:111,0:3889,0:-350.207,-33.4143,0,-350.207,-33.4143,-350.207	1/1:143:0,142,1:0:0:142,1:4909,36:-441.616,-42.7463,0,-438.678,-39.449,-438.377	1/1:153:0,152,0:0:0:152,0:5305,0:-477.292,-45.7566,0,-477.292,-45.7566,-477.292	1/1:9:0,9,0:0:0:9,0:311,0:-28.3248,-2.70927,0,-28.3248,-2.70927,-28.3248	1/2:148:0,65,82:0:0:65,82:2293,2911:-423.892,-237.181,-217.614,-186.705,0,-162.021	1/1:29:0,29,0:0:0:29,0:1006,0:-90.8493,-8.72987,0,-90.8493,-8.72987,-90.8493	1/2:19:0,11,8:0:0:11,8:367,288:-53.5508,-23.8592,-20.5478,-30.0404,0,-27.6321	1/2:108:0,59,49:0:0:59,49:2007,1756:-306.363,-143.573,-125.812,-163.14,0,-148.39	1/1:21:0,21,0:0:0:21,0:735,0:-66.47,-6.32163,0,-66.47,-6.32163,-66.47	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,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chr08	10222669	.	A	G	17875.1	PASS	AB=0.501749;ABP=3.06347;AC=22;AF=0.117021;AN=188;AO=1023;CIGAR=1X;DP=8455;DPB=8455;DPRA=1.35806;EPP=1718.54;EPPR=12547.1;GTI=0;LEN=1;MEANALT=1.02941;MQM=59.9941;MQMR=59.9977;NS=94;NUMALT=1;ODDS=1.16869;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35452;QR=263692;RO=7429;RPL=62;RPP=1718.54;RPPR=12539.4;RPR=961;RUN=1;SAF=0;SAP=2224.43;SAR=1023;SRF=1;SRP=16126.2;SRR=7428;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1230:0:0:0,-10.536,-111.002	0/0:76:75,1:75:2650:1:36:0,-19.28,-235.149	0/0:214:214,0:214:7642:0:0:0,-64.4204,-687.818	0/0:132:132,0:132:4682:0:0:0,-39.736,-421.542	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.317	0/0:40:40,0:40:1410:0:0:0,-12.0412,-127.196	0/0:99:99,0:99:3509:0:0:0,-29.802,-316.019	0/0:98:98,0:98:3476:0:0:0,-29.5009,-313.052	0/0:72:72,0:72:2564:0:0:0,-21.6742,-231.011	0/0:77:77,0:77:2707:0:0:0,-23.1793,-243.855	0/0:84:84,0:84:2991:0:0:0,-25.2865,-269.422	0/0:72:72,0:72:2558:0:0:0,-21.6742,-230.47	0/0:71:71,0:71:2530:0:0:0,-21.3731,-227.951	0/0:99:99,0:99:3513:0:0:0,-29.802,-316.381	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/0:41:41,0:41:1433:0:0:0,-12.3422,-129.261	0/0:110:110,0:110:3926:0:0:0,-33.1133,-353.532	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/0:194:194,0:194:6923:0:0:0,-58.3998,-623.139	0/0:137:136,1:136:4847:1:36:0,-37.6428,-432.788	0/0:101:101,0:101:3590:0:0:0,-30.404,-323.308	0/0:58:58,0:58:2049:0:0:0,-17.4597,-184.68	0/1:138:66,72:66:2344:72:2510:-184.612,0,-169.675	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.551	0/1:285:152,133:152:5391:133:4566:-325.318,0,-399.53	0/0:155:152,3:152:5385:3:108:0,-36.5845,-474.708	0/1:35:19,16:19:680:16:549:-39.1964,0,-50.9931	0/0:202:202,0:202:7197:0:0:0,-60.8081,-647.788	0/0:97:93,4:93:3320:4:136:0,-16.6244,-286.443	0/1:119:51,68:51:1774:68:2380:-178.635,0,-124.116	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:6:5,1:5:171:1:36:-1.79209,0,-13.9193	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:201:201,0:201:7123:0:0:0,-60.507,-641.132	0/0:123:122,1:122:4341:1:36:0,-33.4284,-387.268	0/0:75:75,0:75:2632:0:0:0,-22.5772,-237.127	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:119:59,60:59:2104:60:2085:-152.094,0,-153.807	0/1:44:22,22:22:788:22:746:-54.2087,0,-57.9995	0/0:132:132,0:132:4710:0:0:0,-39.736,-424.06	0/0:54:53,0:53:1904:0:0:0,-15.9546,-171.278	0/0:56:56,0:56:1974:0:0:0,-16.8577,-177.934	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.585	0/0:167:167,0:167:5950:0:0:0,-50.272,-535.61	0/1:212:114,98:114:4034:98:3399:-242.308,0,-299.43	0/0:98:98,0:98:3465:0:0:0,-29.5009,-312.064	0/0:151:150,1:150:5319:1:36:0,-41.8573,-475.249	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.223	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:165:70,95:70:2503:95:3320:-249.352,0,-175.852	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:24:17,7:17:604:7:248:-15.4395,0,-47.4659	0/1:127:44,83:44:1572:83:2881:-221.3,0,-103.541	0/0:41:41,0:41:1400:0:0:0,-12.3422,-126.287	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:55:55,0:55:1938:0:0:0,-16.5566,-174.693	0/0:146:145,1:145:5157:1:32:0,-40.7511,-461.074	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:217:217,0:217:7679:0:0:0,-65.3235,-691.15	0/0:162:161,1:161:5717:1:36:0,-45.1686,-511.053	0/1:45:29,16:29:1031:16:544:-35.7334,0,-79.5563	0/0:93:93,0:93:3291:0:0:0,-27.9958,-296.409	0/0:143:142,1:142:5058:1:36:0,-39.449,-451.766	0/0:72:72,0:72:2566:0:0:0,-21.6742,-231.189	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:72:72,0:72:2536:0:0:0,-21.6742,-228.491	0/1:11:8,3:8:288:3:104:-6.39148,0,-22.9561	0/0:66:66,0:66:2334:0:0:0,-19.868,-210.319	0/1:67:38,29:38:1345:29:1012:-71.2223,0,-101.179	0/0:102:101,1:101:3547:1:36:0,-27.1068,-315.84	0/0:174:173,1:173:6165:1:27:0,-49.6794,-552.25	0/1:116:56,59:56:1982:59:2062:-150.87,0,-143.675	0/0:94:94,0:94:3322:0:0:0,-28.2968,-299.198	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/0:128:127,0:127:4505:0:0:0,-38.2308,-405.258	0/1:146:72,74:72:2532:74:2558:-186.519,0,-184.18	0/0:210:207,3:207:7278:3:99:0,-53.9797,-645.842	0/0:91:91,0:91:3239:0:0:0,-27.3937,-291.732	0/0:74:74,0:74:2628:0:0:0,-22.2762,-236.766	0/0:80:80,0:80:2814:0:0:0,-24.0824,-253.499	0/0:136:136,0:136:4844:0:0:0,-40.9401,-436.117	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:74:47,27:47:1646:27:914:-60.287,0,-126.15	0/1:72:38,34:38:1360:34:1163:-83.2957,0,-101.026	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/1:119:65,54:65:2294:54:1867:-132.483,0,-170.896	0/1:64:20,44:20:703:44:1530:-118.724,0,-44.3276	0/0:108:108,0:108:3804:0:0:0,-32.5112,-342.558	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.765
chr08	10307674	.	C	G	11777.9	PASS	AB=0.521871;ABP=12.6037;AC=49;AF=0.266304;AN=184;AO=1212;CIGAR=1X;DP=4074;DPB=4074;DPRA=1.23451;EPP=2634.83;EPPR=6148.47;GTI=1;LEN=1;MEANALT=1;MQM=28.7236;MQMR=30.2386;NS=92;NUMALT=1;ODDS=0.739208;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43258;QR=102209;RO=2862;RPL=1212;RPP=2634.83;RPPR=6157.11;RPR=0;RUN=1;SAF=0;SAP=2634.83;SAR=1212;SRF=1;SRP=6209.08;SRR=2861;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:13,19:13:464:19:680:-38.8015,0,-24.5282	0/0:35:35,0:35:1245:0:0:0,-10.536,-93.1449	0/1:134:62,72:62:2216:72:2572:-141.924,0,-125.293	0/1:138:77,61:77:2729:61:2180:-112.955,0,-158.316	0/1:23:11,12:11:396:12:432:-23.6694,0,-22.2419	0/1:7:4,3:4:144:3:104:-5.53999,0,-8.92157	0/1:41:16,25:16:568:25:881:-50.617,0,-29.552	0/1:50:32,18:32:1129:18:648:-30.6197,0,-70.1045	0/1:57:28,29:28:1008:29:1031:-56.5827,0,-58.6642	0/1:33:15,18:15:540:18:640:-35.7965,0,-29.5436	0/1:16:7,9:7:248:9:324:-18.3164,0,-13.5344	0/1:43:18,25:18:648:25:885:-49.947,0,-35.4974	0/0:33:33,0:33:1169:0:0:0,-9.93399,-87.5841	0/0:25:25,0:25:896:0:0:0,-7.52575,-65.71	0/0:23:23,0:23:828:0:0:0,-6.92369,-60.2298	0/0:26:26,0:26:932:0:0:0,-7.82678,-68.1781	0/1:13:7,6:7:252:6:212:-11.3552,0,-15.1634	0/0:13:13,0:13:468:0:0:0,-3.91339,-34.9572	0/1:16:12,4:12:428:4:144:-5.62152,0,-27.4065	0/1:79:33,46:33:1165:46:1647:-92.9929,0,-61.6684	0/1:105:53,52:53:1900:52:1846:-98.5696,0,-106.849	0/1:107:37,70:37:1319:70:2488:-139.331,0,-61.3721	0/0:57:56,1:56:2008:1:36:0,-14.3376,-143.534	0/0:40:39,1:39:1392:1:36:0,-9.22012,-97.697	0/1:32:16,16:16:572:16:563:-30.4897,0,-32.5611	0/0:86:86,0:86:3077:0:0:0,-25.8886,-223.009	0/0:124:124,0:124:4430:0:0:0,-37.3277,-322.579	0/1:15:8,7:8:288:7:248:-13.3199,0,-16.7459	0/1:139:83,56:83:2975:56:1995:-95.8554,0,-174.222	0/1:49:22,27:22:792:27:972:-54.0839,0,-42.7	0/0:69:69,0:69:2445:0:0:0,-20.7711,-178.978	0/0:8:8,0:8:288:0:0:0,-2.40824,-21.1156	0/1:18:4,14:4:140:14:504:-30.4092,0,-5.21528	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.7115	0/0:10:10,0:10:360:0:0:0,-3.0103,-26.8342	0/0:15:15,0:15:536:0:0:0,-4.51545,-40.6569	0/0:85:85,0:85:3034:0:0:0,-25.5875,-219.934	0/1:34:14,20:14:500:20:716:-40.2702,0,-26.6567	0/1:15:7,8:7:244:8:288:-15.9211,0,-14.2034	.:.:.:.:.:.:.:.	0/1:34:17,17:17:612:17:608:-32.6527,0,-34.4642	0/1:23:7,16:7:252:16:576:-33.3567,0,-11.5793	0/1:62:25,37:25:900:37:1328:-75.6257,0,-46.9353	0/1:15:7,8:7:252:8:288:-15.9211,0,-14.0622	0/0:26:26,0:26:913:0:0:0,-7.82678,-67.1405	0/1:61:33,28:33:1161:28:987:-50.2445,0,-65.6343	0/0:25:25,0:25:892:0:0:0,-7.52575,-66.8667	0/1:59:31,28:31:1116:28:1008:-53.356,0,-64.0711	0/0:33:33,0:33:1184:0:0:0,-9.93399,-86.3247	0/0:45:45,0:45:1601:0:0:0,-13.5463,-116.904	0/0:66:66,0:66:2376:0:0:0,-19.868,-172.181	1/1:2:0,2:0:0:2:72:-5.36005,-0.60206,0	0/1:72:27,45:27:972:45:1578:-90.7949,0,-50.7676	0/0:13:13,0:13:464:0:0:0,-3.91339,-34.0741	0/1:6:1,5:1:36:5:171:-10.8643,0,-1.17457	0/0:71:71,0:71:2529:0:0:0,-21.3731,-185.099	0/1:30:5,25:5:180:25:892:-53.6676,0,-4.32182	.:.:.:.:.:.:.:.	0/1:10:4,6:4:144:6:216:-11.8782,0,-7.87032	0/1:43:19,24:19:680:24:864:-48.2732,0,-37.0203	0/1:53:27,26:27:972:26:919:-49.4505,0,-54.799	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.90276	0/1:106:52,54:52:1859:54:1936:-101.099,0,-103.415	0/0:69:69,0:69:2434:0:0:0,-20.7711,-176.768	0/0:49:49,0:49:1749:0:0:0,-14.7505,-128.289	0/0:38:38,0:38:1364:0:0:0,-11.4391,-99.3091	0/1:103:56,47:56:1992:47:1684:-87.573,0,-114.637	0/0:64:64,0:64:2292:0:0:0,-19.2659,-166.803	0/0:9:9,0:9:324:0:0:0,-2.70927,-22.3011	0/0:28:28,0:28:1000:0:0:0,-8.42884,-74.8814	0/0:39:39,0:39:1404:0:0:0,-11.7402,-101.726	0/0:10:10,0:10:348:0:0:0,-3.0103,-25.836	0/1:72:42,30:42:1508:30:1080:-54.4655,0,-91.4936	0/0:46:46,0:46:1633:0:0:0,-13.8474,-123.106	0/0:55:55,0:55:1949:0:0:0,-16.5566,-143	0/0:78:78,0:78:2773:0:0:0,-23.4803,-202.434	0/0:39:39,0:39:1404:0:0:0,-11.7402,-104.852	0/0:46:44,2:44:1580:2:72:0,-8.48732,-113.013	0/0:8:8,0:8:288:0:0:0,-2.40824,-21.7595	0/0:56:55,1:55:1964:1:36:0,-14.0366,-141.585	0/1:40:26,14:26:921:14:500:-23.6982,0,-55.8739	0/1:100:49,51:49:1749:51:1828:-99.0511,0,-97.429	0/0:52:52,0:52:1872:0:0:0,-15.6536,-136.344	0/0:30:30,0:30:1080:0:0:0,-9.0309,-78.2065	0/1:16:8,8:8:284:8:275:-15.3846,0,-16.1942	0/1:76:30,46:30:1076:46:1652:-93.4888,0,-56.5683	0/0:15:15,0:15:540:0:0:0,-4.51545,-40.3935	0/1:29:14,15:14:504:15:536:-29.1428,0,-28.9842	0/1:25:9,16:9:324:16:572:-33.0585,0,-16.9164	0/1:6:3,3:3:108:3:104:-6.002,0,-6.39435	0/1:39:23,16:23:828:16:576:-29.1655,0,-48.634	0/1:33:10,23:10:351:23:828:-48.4325,0,-16.1364	0/0:48:48,0:48:1686:0:0:0,-14.4494,-123.798	0/0:50:50,0:50:1796:0:0:0,-15.0515,-129.894
chr08	11060383	.	G	A	91.6382	PASS	AB=0.522113;ABP=30.6686;AC=52;AF=0.276596;AN=188;AO=3408;CIGAR=1X;DP=12244;DPB=12244;DPRA=1.2113;EPP=7386.03;EPPR=19060;GTI=46;LEN=1;MEANALT=1.05455;MQM=15.3876;MQMR=59.9588;NS=94;NUMALT=1;ODDS=0.596381;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121503;QR=314784;RO=8832;RPL=3406;RPP=7386.03;RPPR=19042.7;RPR=2;RUN=1;SAF=3408;SAP=7403.39;SAR=0;SRF=8830;SRP=19164.1;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:38,33:38:1364:33:1171:-24.0084,0,-101.688	0/1:109:53,56:53:1891:56:2004:-43.1985,0,-137.655	0/1:274:160,114:160:5708:114:4080:-74.8677,0,-431.358	0/1:311:159,152:159:5674:152:5403:-113.674,0,-417.16	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.582	0/0:91:91,0:91:3244:0:0:0,-27.3937,-292.183	0/1:169:75,94:75:2664:94:3372:-79.9167,0,-189.13	0/0:231:231,0:231:8207:0:0:0,-69.5379,-738.579	0/0:136:136,0:136:4839:0:0:0,-40.9401,-435.661	0/1:150:82,68:82:2921:68:2406:-46.5253,0,-217.94	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/1:118:60,58:60:2087:58:2069:-42.4886,0,-152.571	0/1:83:42,41:42:1508:41:1449:-32.5488,0,-111.029	0/1:58:22,36:22:788:36:1288:-30.8144,0,-53.7851	0/0:93:93,0:93:3322:0:0:0,-27.9958,-299.197	0/1:65:39,26:39:1368:26:924:-17.4021,0,-103.849	0/1:48:22,26:22:792:26:932:-20.7179,0,-57.1562	0/1:52:32,20:32:1116:20:720:-12.852,0,-85.091	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:519:517,1:517:18424:1:36:0,-154.647,-1656.19	0/0:249:249,0:249:8913:0:0:0,-74.9565,-801.525	0/1:111:26,85:26:932:85:3036:-83.8674,0,-50.7845	0/1:177:81,96:81:2879:96:3420:-77.5179,0,-206.065	0/1:59:37,22:37:1328:22:788:-12.0183,0,-102.061	0/1:156:60,96:60:2129:96:3413:-82.2086,0,-144.916	0/0:344:341,3:341:12207:3:108:0,-99.3636,-1094.28	0/0:284:284,0:284:10091:0:0:0,-85.4925,-908.129	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:419:177,242:177:6325:242:8595:-207.282,0,-443.21	0/1:200:115,85:115:4116:85:3044:-56.137,0,-310.419	0/0:171:171,0:171:6081:0:0:0,-51.4761,-547.395	0/0:4:4,0:4:121:0:0:0,-1.20412,-11.1896	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:18:4,14:4:144:14:504:-13.5892,0,-7.89508	0/1:185:96,89:96:3420:89:3179:-65.0976,0,-252.322	0/1:150:78,72:78:2764:72:2575:-52.7882,0,-203.849	0/1:43:27,16:27:964:16:576:-9.20208,0,-74.1325	0/1:4:3,1:3:108:1:36:-0.292552,0,-8.87105	0/1:259:123,136:123:4400:136:4850:-106.03,0,-318.206	0/1:21:9,12:9:320:12:420:-10.3271,0,-22.8207	0/1:209:102,107:102:3630:107:3814:-82.5015,0,-263.99	0/1:61:26,35:26:917:35:1260:-29.2853,0,-64.4818	0/0:73:72,1:72:2545:1:36:0,-20.4785,-227.801	0/0:186:186,0:186:6633:0:0:0,-55.9916,-597.05	0/0:183:183,0:183:6543:0:0:0,-55.0885,-588.953	0/0:266:266,0:266:9468:0:0:0,-80.074,-850.162	0/1:104:65,39:65:2308:39:1404:-21.465,0,-176.674	0/1:175:99,76:99:3548:76:2724:-49.3792,0,-266.836	0/1:132:46,86:46:1636:86:3064:-79.6329,0,-107.793	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:181:181,0:181:6466:0:0:0,-54.4864,-581.954	0/1:123:57,66:57:2036:66:2355:-51.5482,0,-146.486	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:235:113,122:113:4044:122:4333:-93.5229,0,-293.406	0/1:88:43,45:43:1524:45:1600:-34.5682,0,-110.592	0/1:6:5,1:5:180:1:36:-0.56735,0,-14.7459	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:136:136,0:136:4826:0:0:0,-40.9401,-434.496	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	1/1:2:0,2:0:0:2:72:-2.84368,-0.60206,0	0/1:257:127,130:127:4524:130:4648:-99.5917,0,-329.963	0/0:273:271,1:271:9690:1:36:0,-80.6382,-870.449	0/1:76:44,32:44:1567:32:1136:-20.3575,0,-118.443	0/0:154:154,0:154:5492:0:0:0,-46.3586,-494.378	0/1:261:133,127:133:4709:127:4530:-97.4293,0,-345.257	0/1:200:63,137:63:2260:137:4920:-126.816,0,-143.456	0/1:43:17,26:17:612:26:928:-26.1919,0,-42.4691	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:48:27,21:27:968:21:756:-13.8975,0,-72.9879	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:149:68,81:68:2410:81:2873:-65.1585,0,-172.303	0/1:139:63,76:63:2247:76:2705:-62.0792,0,-160.65	0/0:245:245,0:245:8748:0:0:0,-73.7523,-787.313	0/1:229:116,113:116:4155:113:4010:-83.9482,0,-305.196	0/1:175:68,107:68:2420:107:3819:-93.4924,0,-161.587	0/0:150:150,0:150:5357:0:0:0,-45.1545,-482.262	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:193:193,0:193:6888:0:0:0,-58.0988,-619.988	0/0:223:222,0:222:7885:0:0:0,-66.8287,-709.32	0/0:376:376,0:376:13382:0:0:0,-113.187,-1204.17	0/1:70:30,40:30:1072:40:1404:-35.6381,0,-75.7204	0/1:85:31,54:31:1112:54:1940:-49.2126,0,-74.8038	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/1:139:69,70:69:2450:70:2449:-53.3154,0,-178.911	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/0:78:78,0:78:2775:0:0:0,-23.4803,-249.991	0/0:74:74,0:74:2572:0:0:0,-22.2762,-231.726	0/1:31:16,15:16:572:15:540:-11.0228,0,-42.4815	0/1:64:31,33:31:1103:33:1177:-25.9718,0,-80.3139	0/1:103:32,71:32:1140:71:2536:-68.1594,0,-71.9031	0/0:242:242,0:242:8649:0:0:0,-72.8493,-778.404	0/0:107:107,0:107:3835:0:0:0,-32.2102,-345.345
chr08	11592519	.	T	G	22761.2	PASS	AB=0.246009;ABP=5198.45;AC=40;AF=0.212766;AN=188;AO=2294;CIGAR=1X;DP=19858;DPB=19858;DPRA=1.23675;EPP=4984.37;EPPR=38134.1;GTI=8;LEN=1;MEANALT=1.04545;MQM=59.8723;MQMR=59.858;NS=94;NUMALT=1;ODDS=0.805644;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82026;QR=629336;RO=17560;RPL=0;RPP=4984.37;RPPR=38134.1;RPR=2294;RUN=1;SAF=2294;SAP=4984.37;SAR=0;SRF=17560;SRP=38134.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:56,7:56:1999:7:248:-3.6993,0,-161.214	0/0:319:319,0:319:11464:0:0:0,-96.0286,-1031.36	0/1:327:242,85:242:8704:85:3035:-174.936,0,-684.863	0/0:413:412,1:412:14775:1:36:0,-120.727,-1325.87	0/1:161:135,26:135:4831:26:932:-35.7326,0,-385.7	0/1:134:97,37:97:3456:37:1317:-78.4813,0,-270.896	0/0:266:266,0:266:9532:0:0:0,-80.074,-857.2	0/1:371:270,101:270:9680:101:3605:-212.965,0,-758.974	0/0:190:190,0:190:6796:0:0:0,-57.1957,-610.845	0/0:168:168,0:168:5993:0:0:0,-50.573,-538.678	0/0:186:186,0:186:6683:0:0:0,-55.9916,-601.487	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.17	0/0:135:135,0:135:4844:0:0:0,-40.639,-435.682	0/0:210:210,0:210:7540:0:0:0,-63.2163,-678.599	0/0:110:110,0:110:3925:0:0:0,-33.1133,-353.436	0/0:123:123,0:123:4404:0:0:0,-37.0267,-396.53	0/0:166:166,0:166:5928:0:0:0,-49.971,-533.492	0/0:113:113,0:113:4055:0:0:0,-34.0164,-365.132	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.717	0/1:329:267,62:267:9556:62:2197:-98.9552,0,-760.937	0/1:231:159,72:159:5678:72:2563:-161.379,0,-441.598	0/1:226:155,71:155:5538:71:2556:-162.257,0,-430.44	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/0:241:236,5:236:8464:5:180:0,-55.9962,-745.199	0/0:189:189,0:189:6769:0:0:0,-56.8947,-609.251	0/1:523:382,140:382:13692:140:5028:-295.155,0,-1074.06	0/0:536:536,0:536:19247:0:0:0,-161.352,-1731.02	0/0:59:59,0:59:2111:0:0:0,-17.7608,-190.255	0/1:621:490,131:490:17574:131:4704:-236.544,0,-1394.32	0/1:397:297,100:297:10629:100:3565:-201.534,0,-837.004	0/0:245:245,0:245:8783:0:0:0,-73.7523,-789.792	0/1:9:7,2:7:252:2:72:-4.12703,0,-20.3197	0/1:62:50,12:50:1787:12:432:-20.5573,0,-142.448	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5043	0/1:37:24,13:24:864:13:464:-30.9594,0,-66.9445	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.061	0/1:316:249,67:249:8928:67:2408:-121.851,0,-708.307	0/1:573:446,127:446:15974:127:4532:-235.555,0,-1264.63	0/0:174:174,0:174:6243:0:0:0,-52.3792,-561.938	0/1:17:11,6:11:396:6:212:-14.3073,0,-30.8652	0/0:279:279,0:279:10004:0:0:0,-83.9874,-900.182	0/0:81:81,0:81:2916:0:0:0,-24.3834,-262.64	0/0:283:283,0:283:10141:0:0:0,-85.1915,-912.058	0/0:87:87,0:87:3107:0:0:0,-26.1896,-279.851	0/1:123:97,26:97:3488:26:936:-47.5328,0,-277.097	0/1:123:100,23:100:3592:23:817:-36.8248,0,-286.457	0/0:327:326,0:326:11699:0:0:0,-98.1358,-1052.4	0/0:416:415,0:415:14874:0:0:0,-124.927,-1337.26	0/0:247:247,0:247:8852:0:0:0,-74.3544,-796.619	0/0:330:330,0:330:11805:0:0:0,-99.3399,-1062.28	0/1:322:246,76:246:8822:76:2724:-148.471,0,-697.031	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.221	0/0:385:385,0:385:13766:0:0:0,-115.897,-1238.49	0/0:83:83,0:83:2959:0:0:0,-24.9855,-266.53	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.535	0/0:364:364,0:364:13046:0:0:0,-109.575,-1173.68	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:28:14,14:14:500:14:504:-37.263,0,-36.8957	0/1:69:52,17:52:1855:17:612:-34.6139,0,-146.458	0/0:261:261,0:261:9368:0:0:0,-78.5688,-842.939	0/1:308:230,78:230:8247:78:2791:-158.684,0,-649.521	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:192:192,0:192:6895:0:0:0,-57.7978,-620.614	0/1:419:341,78:341:12222:78:2785:-124.758,0,-973.46	0/0:191:185,6:185:6640:6:216:0,-37.7066,-577.848	0/1:192:134,58:134:4816:58:2068:-128.592,0,-375.75	0/1:159:120,39:120:4308:39:1396:-78.0753,0,-340.027	0/1:314:206,108:206:7373:108:3865:-253.494,0,-569.093	0/1:90:64,26:64:2291:26:932:-57.1054,0,-179.357	0/1:200:138,61:138:4944:61:2174:-135.611,0,-384.695	0/1:214:176,38:176:6316:38:1354:-57.7382,0,-504.11	0/1:51:43,8:43:1544:8:288:-10.9149,0,-123.896	0/1:356:269,87:269:9616:87:3101:-172.143,0,-757.91	0/1:162:122,40:122:4358:40:1436:-80.7693,0,-343.624	0/1:332:257,75:257:9185:75:2696:-142.939,0,-726.679	0/0:346:346,0:346:12419:0:0:0,-104.156,-1117.45	0/1:454:315,139:315:11266:139:4963:-310.016,0,-877.118	0/1:335:245,90:245:8792:90:3206:-187.914,0,-690.328	0/1:36:31,5:31:1112:5:176:-5.34637,0,-89.5543	0/0:286:286,0:286:10257:0:0:0,-86.0946,-922.967	0/0:232:231,1:231:8259:1:36:0,-66.2407,-739.608	0/0:367:367,0:367:13146:0:0:0,-110.478,-1182.93	0/0:194:194,0:194:6967:0:0:0,-58.3998,-627.078	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946	0/0:132:132,0:132:4732:0:0:0,-39.736,-425.333	0/0:236:236,0:236:8472:0:0:0,-71.0431,-762.432	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.64	0/1:148:115,33:115:4120:33:1188:-62.6731,0,-326.422	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.87	0/0:142:142,0:142:5091:0:0:0,-42.7463,-458.331	0/1:328:256,72:256:9179:72:2560:-131.902,0,-727.311	0/1:112:81,31:81:2900:31:1116:-67.0363,0,-227.508	0/0:158:158,0:158:5658:0:0:0,-47.5627,-509.338	0/0:175:175,0:175:6284:0:0:0,-52.6802,-565.636
chr08	11592539	.	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chr08	11961018	.	C	G	7539.62	PASS	AB=0.541262;ABP=15.1958;AC=23;AF=0.125;AN=184;AO=456;CIGAR=1X;DP=3910;DPB=3910;DPRA=1.07372;EPP=993.202;EPPR=7503.28;GTI=1;LEN=1;MEANALT=1;MQM=59.9474;MQMR=59.9919;NS=92;NUMALT=1;ODDS=5.05234;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=16253;QR=123588;RO=3454;RPL=0;RPP=993.202;RPPR=7503.28;RPR=456;RUN=1;SAF=0;SAP=993.202;SAR=456;SRF=0;SRP=7503.28;SRR=3454;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.186	0/0:119:119,0:119:4264:0:0:0,-35.8226,-383.938	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:65:65,0:65:2303:0:0:0,-19.5669,-207.528	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.45	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:30:11,19:11:396:19:676:-52.1371,0,-26.9518	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:125:66,59:66:2364:59:2108:-152.35,0,-175.39	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.246	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:92:92,0:92:3287:0:0:0,-27.6948,-296.049	0/0:68:67,1:67:2404:1:36:0,-16.8718,-213.018	0/1:35:11,24:11:396:24:860:-67.1849,0,-25.4467	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:136:136,0:136:4872:0:0:0,-40.9401,-438.633	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	.:.:.:.:.:.:.:.	0/1:59:32,27:32:1148:27:968:-69.6766,0,-85.8691	0/1:20:8,12:8:288:12:428:-32.8382,0,-20.2468	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:46:46,0:46:1634:0:0:0,-13.8474,-147.347	0/1:57:33,24:33:1184:24:860:-60.5631,0,-89.7096	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:53:29,24:29:1040:24:860:-61.7672,0,-77.9598	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:46:11,35:11:396:35:1239:-97.9617,0,-22.1354	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:83:83,0:83:2951:0:0:0,-24.9855,-265.824	.:.:.:.:.:.:.:.	0/0:120:120,0:120:4288:0:0:0,-36.1236,-386.098	0/0:73:72,1:72:2565:1:36:0,-18.3769,-227.5	0/1:30:15,15:15:536:15:536:-39.5439,0,-39.5439	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:90:90,0:90:3231:0:0:0,-27.0927,-291.01	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:10:1,9:1:32:9:324:-26.4956,0,-0.189013	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:54:18,36:18:635:36:1292:-100.328,0,-41.2213	0/0:70:70,0:70:2489:0:0:0,-21.0721,-224.262	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:32:12,20:12:432:20:716:-55.1348,0,-29.5882	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:27:26,1:26:932:1:36:0,-4.52953,-80.6006	0/1:38:10,28:10:360:28:965:-75.7172,0,-21.3052	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:81:79,2:79:2825:2:72:0,-17.5467,-247.65	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:50:27,23:27:959:23:824:-59.4318,0,-71.5739	0/1:46:21,25:21:756:25:892:-66.7523,0,-54.5198	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:65:40,25:40:1406:25:888:-60.6721,0,-107.269	0/1:48:21,27:21:743:27:953:-71.6347,0,-52.7439	0/0:129:128,1:128:4600:1:36:0,-35.2346,-410.564	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993
chr08	11961054	.	T	C	7547.84	PASS	AB=0.539568;ABP=14.3519;AC=23;AF=0.125;AN=184;AO=459;CIGAR=1X;DP=3970;DPB=3970;DPRA=0.959523;EPP=999.716;EPPR=7627.05;GTI=1;LEN=1;MEANALT=1;MQM=59.9477;MQMR=59.9821;NS=92;NUMALT=1;ODDS=5.22747;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=16301;QR=125289;RO=3511;RPL=459;RPP=999.716;RPPR=7627.05;RPR=0;RUN=1;SAF=0;SAP=999.716;SAR=459;SRF=0;SRP=7627.05;SRR=3511;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:121:121,0:121:4279:0:0:0,-36.4246,-385.288	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:64:64,0:64:2262:0:0:0,-19.2659,-203.84	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:44:44,0:44:1557:0:0:0,-13.2453,-140.42	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0706	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:73:73,0:73:2581:0:0:0,-21.9752,-232.531	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.952	0/1:30:11,19:11:381:19:684:-52.8594,0,-25.5897	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:126:67,59:67:2387:59:2062:-147.907,0,-177.157	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.725	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/0:95:95,0:95:3359:0:0:0,-28.5978,-302.524	0/0:70:69,1:69:2449:1:36:0,-17.4738,-217.066	0/1:37:12,25:12:428:25:900:-70.182,0,-27.7207	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:139:139,0:139:4977:0:0:0,-41.8432,-448.076	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	.:.:.:.:.:.:.:.	0/1:58:32,26:32:1152:26:936:-67.0997,0,-86.5304	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/0:47:47,0:47:1658:0:0:0,-14.1484,-149.504	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:39:39,0:39:1370:0:0:0,-11.7402,-123.595	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.981	0/1:55:30,25:30:1080:25:885:-63.4099,0,-80.9566	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.658	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:54:30,24:30:1080:24:860:-61.4662,0,-81.2576	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:48:13,35:13:468:35:1252:-98.531,0,-28.0102	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	.:.:.:.:.:.:.:.	0/0:122:122,0:122:4349:0:0:0,-36.7257,-391.585	0/0:71:70,1:70:2504:1:36:0,-17.7749,-222.014	0/1:31:15,16:15:536:16:546:-40.1273,0,-39.2429	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:55:55,0:55:1976:0:0:0,-16.5566,-177.624	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:10:1,9:1:36:9:290:-23.4018,0,-0.587975	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:55:18,37:18:648:37:1332:-103.626,0,-42.0952	0/0:72:72,0:72:2545:0:0:0,-21.6742,-229.301	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/1:33:13,20:13:468:20:712:-54.4727,0,-32.5257	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:28:27,1:27:964:1:36:0,-4.83056,-83.4785	0/1:39:10,29:10:341:29:1010:-79.4669,0,-19.2776	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.843	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:82:80,2:80:2860:2:72:0,-17.8477,-250.801	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:50:27,23:27:968:23:809:-58.0768,0,-72.3859	0/1:47:22,25:22:792:25:891:-66.3604,0,-57.4573	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:66:41,25:41:1461:25:900:-61.453,0,-111.916	0/1:49:22,27:22:788:27:972:-73.0474,0,-56.4943	0/0:132:132,0:132:4694:0:0:0,-39.736,-422.62	0/0:59:59,0:59:2090:0:0:0,-17.7608,-188.366
chr08	12050124	.	G	A	147870	PASS	AB=0.501264;ABP=3.03226;AC=165;AF=0.87766;AN=188;AO=6682;CIGAR=1X;DP=7494;DPB=7494;DPRA=0;EPP=14495.4;EPPR=1766.25;GTI=1;LEN=1;MEANALT=1;MQM=59.8955;MQMR=59.7648;NS=94;NUMALT=1;ODDS=6.99063;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237104;QR=29004;RO=812;RPL=2;RPP=14495.4;RPPR=1766.25;RPR=6680;RUN=1;SAF=6682;SAP=14512.8;SAR=0;SRF=812;SRP=1766.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1173:-105.846,-9.93399,0	1/1:81:0,81:0:0:81:2866:-258.176,-24.3834,0	1/1:121:0,121:0:0:121:4261:-383.599,-36.4246,0	1/1:120:0,120:0:0:120:4244:-382.118,-36.1236,0	1/1:52:1,51:1:36:51:1783:-157.147,-12.0553,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:76:1,75:1:36:75:2658:-235.865,-19.28,0	1/1:125:0,125:0:0:125:4445:-400.116,-37.6288,0	1/1:91:1,90:1:36:90:3225:-286.87,-23.7955,0	1/1:89:0,89:0:0:89:3139:-282.734,-26.7917,0	1/1:70:0,70:0:0:70:2497:-224.98,-21.0721,0	1/1:88:0,88:0:0:88:3156:-284.242,-26.4906,0	1/1:79:0,79:0:0:79:2821:-254.128,-23.7814,0	1/1:89:0,89:0:0:89:3192:-287.499,-26.7917,0	1/1:73:1,72:1:36:72:2539:-225.159,-18.3769,0	1/1:65:0,65:0:0:65:2325:-209.494,-19.567,0	1/1:89:0,89:0:0:89:3121:-281.091,-26.7917,0	1/1:78:1,77:1:36:77:2764:-245.398,-19.8821,0	1/1:68:0,68:0:0:68:2429:-218.859,-20.47,0	1/1:132:0,132:0:0:132:4630:-416.862,-39.736,0	1/1:114:1,113:1:21:113:3992:-357.354,-32.2175,0	1/1:26:0,26:0:0:26:887:-80.1361,-7.82678,0	1/1:32:0,32:0:0:32:1137:-102.637,-9.63296,0	0/1:76:37,39:37:1324:39:1381:-101.708,0,-96.5838	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:187:100,87:100:3566:87:3056:-218.97,0,-264.784	1/1:216:0,216:0:0:216:7681:-691.229,-65.0225,0	0/1:42:22,20:22:777:20:720:-52.4855,0,-57.5562	1/1:180:0,180:0:0:180:6393:-575.456,-54.1854,0	1/1:48:1,47:1:36:47:1673:-147.257,-10.8512,0	0/1:80:34,46:34:1205:46:1641:-123.894,0,-84.6715	0/1:6:3,3:3:108:3:93:-6.86813,0,-8.26899	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.86629	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	1/1:252:0,252:0:0:252:8984:-808.523,-75.8596,0	1/1:62:0,62:0:0:62:2202:-198.429,-18.6639,0	1/1:84:0,84:0:0:84:3017:-271.76,-25.2865,0	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:117:48,69:48:1724:69:2450:-185.531,0,-120.225	0/1:48:26,22:26:921:22:788:-56.7954,0,-68.7558	1/1:111:0,111:0:0:111:3909:-351.982,-33.4143,0	1/1:116:0,116:0:0:116:4142:-372.957,-34.9195,0	1/1:84:0,84:0:0:84:2978:-268.165,-25.2865,0	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	1/1:94:0,94:0:0:94:3357:-302.3,-28.2968,0	0/1:138:87,51:87:3113:51:1806:-121.275,0,-238.767	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:143:0,143:0:0:143:4944:-445.104,-43.0473,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	0/1:86:49,37:49:1741:37:1283:-89.876,0,-131.079	1/1:28:0,28:0:0:28:981:-88.601,-8.42884,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:98:48,50:48:1671:50:1766:-129.701,0,-120.9	1/1:41:0,41:0:0:41:1453:-131.064,-12.3422,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:65:0,65:0:0:65:2325:-209.508,-19.567,0	1/1:122:0,122:0:0:122:4384:-394.732,-36.7257,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:92:0,92:0:0:92:3236:-291.458,-27.6948,0	1/1:154:2,152:2:72:152:5410:-479.566,-39.5219,0	0/1:65:22,43:22:792:43:1503:-115.941,0,-52.0295	1/1:69:0,69:0:0:69:2465:-222.102,-20.7711,0	1/1:77:0,77:0:0:77:2749:-246.869,-23.1793,0	1/1:62:1,61:1:36:61:2128:-188.183,-15.0656,0	1/1:48:1,47:1:36:47:1673:-147.257,-10.8512,0	1/1:50:0,50:0:0:50:1751:-157.868,-15.0515,0	1/1:130:1,129:1:36:129:4582:-408.923,-35.5356,0	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3821	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:78:41,37:41:1476:37:1287:-92.5137,0,-108.794	1/1:161:0,161:0:0:161:5730:-515.817,-48.4658,0	1/1:84:0,84:0:0:84:3023:-272.3,-25.2865,0	0/1:85:35,50:35:1260:50:1765:-133.542,0,-88.1179	1/1:92:0,92:0:0:92:3230:-290.919,-27.6948,0	1/1:14:0,14:0:0:14:470:-42.6176,-4.21442,0	1/1:71:0,71:0:0:71:2503:-225.387,-21.3731,0	0/1:99:47,52:47:1673:52:1829:-135.083,0,-121.049	1/1:172:0,172:0:0:172:6029:-542.343,-51.7772,0	1/1:95:0,95:0:0:95:3359:-302.438,-28.5979,0	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	1/1:114:0,114:0:0:114:4092:-368.46,-34.3174,0	1/1:177:0,177:0:0:177:6348:-571.323,-53.2823,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:83:36,47:36:1296:47:1673:-125.869,0,-91.9584	0/1:80:41,39:41:1476:39:1370:-99.5071,0,-109.054	1/1:63:0,63:0:0:63:2241:-201.952,-18.9649,0	0/1:115:51,64:51:1836:64:2296:-172.273,0,-130.902	0/1:69:48,21:48:1728:21:733:-45.5186,0,-135.034	1/1:104:0,104:0:0:104:3684:-331.72,-31.3071,0	1/1:151:0,151:0:0:151:5345:-481.179,-45.4555,0
chr08	12050135	.	CGCCC	GGCCC,GGCCT	309842	PASS	AB=0.532184,0.462747;ABP=20.7618,26.793;AC=166,22;AF=0.882979,0.117021;AN=188;AO=10184,918;CIGAR=1X4M,1X3M1X;DP=11162;DPB=11167;DPRA=0,0.794485;EPP=1674.69,971.894;EPPR=4.45795;GTI=2;LEN=1,5;MEANALT=1.79787,2.44444;MQM=59.9584,59.6721;MQMR=60;NS=94;NUMALT=2;ODDS=2.59556;PAIRED=0,0;PAIREDR=0;PAO=3,15;PQA=65.5,514;PQR=65.5;PRO=3;QA=362292,31187;QR=181;RO=6;RPL=54,22;RPP=21650.7,1809.91;RPPR=8.80089;RPR=10130,896;RUN=1,1;SAF=6546,801;SAP=1806.13,1109.69;SAR=3638,117;SRF=5;SRP=8.80089;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31,0:0:0:31,0:1088,0:-98.2268,-9.33193,0,-98.2268,-9.33193,-98.2268	1/1:78:0,78,0:0:0:78,0:2777,0:-250.169,-23.4803,0,-250.169,-23.4803,-250.169	1/1:120:0,120,0:0:0:120,0:4258,0:-383.358,-36.1236,0,-383.358,-36.1236,-383.358	1/1:252:1,249,0:1:30:249,0:8823,0:-791.048,-72.5662,0,-791.349,-74.9565,-793.747	1/1:51:0,51,0:0:0:51,0:1832,0:-165.159,-15.3525,0,-165.159,-15.3525,-165.159	1/1:49:0,49,0:0:0:49,0:1756,0:-158.324,-14.7505,0,-158.324,-14.7505,-158.324	1/1:164:0,163,1:0:0:163,1:5804,29:-522.183,-49.0679,0,-519.875,-46.4693,-519.574	1/1:125:0,124,0:0:0:124,0:4427,0:-398.292,-37.3277,0,-398.292,-37.3277,-398.292	1/1:92:0,90,1:0:0:90,1:3183,36:-286.328,-27.0927,0,-283.391,-24.1553,-283.09	1/1:140:0,140,0:0:0:140,0:4994,0:-449.61,-42.1442,0,-449.61,-42.1442,-449.61	1/1:122:0,121,0:0:0:121,0:4320,0:-388.646,-36.4246,0,-388.646,-36.4246,-388.646	1/1:84:0,84,0:0:0:84,0:3003,0:-270.501,-25.2865,0,-270.501,-25.2865,-270.501	1/1:77:1,76,0:1:25:76,0:2720,0:-242.544,-20.6794,0,-242.845,-22.8783,-244.792	1/1:87:0,87,0:0:0:87,0:3112,0:-280.307,-26.1896,0,-280.307,-26.1896,-280.307	1/1:145:0,145,0:0:0:145,0:5204,0:-468.497,-43.6494,0,-468.497,-43.6494,-468.497	1/1:65:0,65,0:0:0:65,0:2308,0:-207.977,-19.567,0,-207.977,-19.567,-207.977	1/1:86:0,86,0:0:0:86,0:3081,0:-277.499,-25.8886,0,-277.499,-25.8886,-277.499	1/1:77:1,75,0:1:35:75,0:2696,0:-239.38,-19.7342,0,-239.681,-22.5773,-242.529	1/1:68:0,68,0:0:0:68,0:2416,0:-217.685,-20.47,0,-217.685,-20.47,-217.685	1/1:328:0,326,0:0:0:326,0:11586,0:-1042.26,-98.1358,0,-1042.26,-98.1358,-1042.26	1/1:111:0,111,0:0:0:111,0:3962,0:-356.448,-33.4143,0,-356.448,-33.4143,-356.448	1/1:70:0,70,0:0:0:70,0:2476,0:-223.092,-21.0721,0,-223.092,-21.0721,-223.092	1/1:84:0,84,0:0:0:84,0:2974,0:-267.891,-25.2865,0,-267.891,-25.2865,-267.891	1/2:77:0,40,37:0:0:40,37:1421,1272:-219.044,-103.25,-91.2091,-115.756,0,-104.618	1/1:56:0,55,0:0:0:55,0:1938,0:-174.333,-16.5567,0,-174.333,-16.5567,-174.333	1/2:415:0,196,216:0:0:196,216:6915,7338:-1158.2,-595.127,-536.125,-563.142,0,-498.12	1/1:211:0,209,0:0:0:209,0:7481,0:-672.952,-62.9153,0,-672.952,-62.9153,-672.952	1/2:43:0,22,21:0:0:22,21:792,702:-121.795,-57.1584,-50.5357,-64.983,0,-58.6614	1/1:369:0,367,0:0:0:367,0:12904,0:-1160.93,-110.478,0,-1160.93,-110.478,-1160.93	1/1:48:0,47,1:0:0:47,1:1673,36:-150.496,-14.1484,0,-147.558,-10.8512,-147.257	1/2:120:0,85,34:0:0:85,34:3028,1185:-343.322,-96.5055,-70.918,-246.952,0,-236.717	1/2:5:0,2,3:0:0:2,3:72,107:-14.9552,-9.07908,-8.47702,-6.23466,0,-5.33157	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:4:0,1,3:0:0:1,3:36,98:-11.1855,-8.23972,-7.93869,-3.29724,0,-2.39415	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:14:0,8,6:0:0:8,6:288,207:-40.3102,-16.804,-14.3958,-23.4994,0,-21.6932	1/1:407:0,404,0:0:0:404,0:14451,0:-1300.03,-121.616,0,-1300.03,-121.616,-1300.03	1/1:62:0,62,0:0:0:62,0:2209,0:-199.052,-18.6639,0,-199.052,-18.6639,-199.052	1/1:84:0,84,0:0:0:84,0:3016,0:-271.67,-25.2865,0,-271.67,-25.2865,-271.67	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:115:0,66,49:0:0:66,49:2364,1657:-327.103,-134.3,-114.432,-192.791,0,-178.04	1/2:47:0,22,25:0:0:22,25:788,819:-130.406,-66.128,-59.5054,-64.263,0,-56.7373	1/1:108:0,107,0:0:0:107,0:3827,0:-344.249,-32.2102,0,-344.249,-32.2102,-344.249	1/1:192:0,191,0:0:0:191,0:6836,0:-614.946,-57.4967,0,-614.946,-57.4967,-614.946	1/1:137:0,136,0:0:0:136,0:4832,0:-434.699,-40.9401,0,-434.699,-40.9401,-434.699	1/1:96:1,95,0:1:26:95,0:3358,0:-299.839,-26.2991,0,-300.14,-28.5979,-302.178	1/1:93:0,90,0:0:0:90,0:3206,0:-288.405,-27.0927,0,-288.405,-27.0927,-288.405	1/2:214:0,127,87:0:0:127,87:4528,2957:-608.925,-239.814,-201.584,-369.098,0,-342.908	1/1:126:0,126,0:0:0:126,0:4496,0:-404.81,-37.9298,0,-404.81,-37.9298,-404.81	1/1:252:0,252,0:0:0:252,0:8977,0:-807.913,-75.8596,0,-807.913,-75.8596,-807.913	1/1:147:0,145,0:0:0:145,0:5021,0:-451.682,-43.6494,0,-451.682,-43.6494,-451.682	1/1:19:0,19,0:0:0:19,0:676,0:-61.168,-5.71957,0,-61.168,-5.71957,-61.168	1/2:85:1,35,49:1:29:35,49:1260,1697:-238.22,-135.705,-127.477,-100.611,0,-88.1674	1/1:50:0,49,0:0:0:49,0:1730,0:-155.624,-14.7505,0,-155.624,-14.7505,-155.624	1/2:11:0,6,5:0:0:6,5:216,165:-31.3096,-13.6688,-11.8626,-17.9843,0,-16.4792	1/2:100:0,51,49:0:0:51,49:1828,1660:-283.097,-134.014,-118.662,-149.073,0,-134.323	1/1:91:0,91,0:0:0:91,0:3232,0:-291.104,-27.3937,0,-291.104,-27.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chr08	12595017	.	G	T	17386.1	PASS	AB=0.48911;ABP=5.18589;AC=20;AF=0.106383;AN=188;AO=1048;CIGAR=1X;DP=10432;DPB=10432;DPRA=1.24836;EPP=2235.49;EPPR=19486.6;GTI=1;LEN=1;MEANALT=1.03333;MQM=59.9656;MQMR=59.9997;NS=94;NUMALT=1;ODDS=1.91472;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37361;QR=334707;RO=9380;RPL=1043;RPP=2235.49;RPPR=19486.6;RPR=5;RUN=1;SAF=0;SAP=2278.71;SAR=1048;SRF=0;SRP=20371.4;SRR=9380;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:49:48,1:48:1707:1:36:0,-11.1522,-150.317	0/0:99:99,0:99:3555:0:0:0,-29.802,-320.157	0/0:159:159,0:159:5681:0:0:0,-47.8638,-511.408	0/0:223:223,0:223:7946:0:0:0,-67.1297,-715.165	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:52:52,0:52:1840:0:0:0,-15.6536,-165.88	0/0:146:146,0:146:5195:0:0:0,-43.9504,-467.69	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.395	0/0:130:129,1:129:4605:1:36:0,-35.5356,-411.015	0/0:124:124,0:124:4440:0:0:0,-37.3277,-399.771	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/0:153:153,0:153:5459:0:0:0,-46.0576,-491.44	0/0:107:107,0:107:3821:0:0:0,-32.2102,-344.086	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:112:112,0:112:3981:0:0:0,-33.7154,-358.479	0/0:98:98,0:98:3515:0:0:0,-29.5009,-316.559	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:300:300,0:300:10722:0:0:0,-90.309,-964.888	0/0:231:230,1:230:8231:1:36:0,-65.9397,-737.203	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:181:181,0:181:6440:0:0:0,-54.4864,-579.687	0/1:93:52,40:52:1864:40:1436:-101.483,0,-139.985	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/1:315:155,160:155:5529:160:5683:-416.766,0,-402.911	0/0:234:233,0:233:8324:0:0:0,-70.14,-748.808	0/1:58:25,33:25:892:33:1176:-88.688,0,-63.1399	0/0:249:248,0:248:8836:0:0:0,-74.6554,-794.87	0/0:188:183,5:183:6538:5:176:0,-40.4086,-572.318	0/1:114:61,53:61:2180:53:1889:-135.97,0,-162.149	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:19:16,3:16:554:3:108:-4.3556,0,-44.4653	0/0:258:258,0:258:9210:0:0:0,-77.6657,-828.87	0/0:194:194,0:194:6937:0:0:0,-58.3998,-624.395	0/0:55:55,0:55:1951:0:0:0,-16.5566,-175.865	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:158:81,77:81:2904:77:2764:-201.438,0,-214.033	0/1:42:22,20:22:792:20:708:-51.4023,0,-58.9624	0/0:124:124,0:124:4434:0:0:0,-37.3277,-399.23	0/0:105:105,0:105:3754:0:0:0,-31.6081,-338.059	0/0:81:81,0:81:2867:0:0:0,-24.3834,-258.266	0/0:96:96,0:96:3423:0:0:0,-28.8989,-308.284	0/0:98:98,0:98:3511:0:0:0,-29.5009,-316.199	0/1:237:130,107:130:4610:107:3780:-269.054,0,-343.72	0/0:159:158,1:158:5636:1:36:0,-44.2655,-503.765	0/0:167:167,0:167:5963:0:0:0,-50.272,-536.778	0/0:190:188,2:188:6706:2:72:0,-51.0197,-597.439	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:88:44,44:44:1576:44:1568:-114.921,0,-115.641	0/0:88:88,0:88:3131:0:0:0,-26.4906,-282.017	0/1:15:10,5:10:360:5:176:-11.6696,0,-28.2289	0/1:200:109,91:109:3891:91:3226:-230.355,0,-290.179	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:119:119,0:119:4263:0:0:0,-35.8226,-383.847	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:251:250,1:250:8918:1:36:0,-71.9603,-799.005	0/0:218:217,1:217:7770:1:36:0,-62.0263,-695.731	0/1:73:35,38:35:1252:38:1356:-100.365,0,-91.0099	0/0:102:102,0:102:3638:0:0:0,-30.7051,-327.625	0/0:224:223,0:223:7943:0:0:0,-67.1297,-714.536	0/0:162:161,1:161:5738:1:36:0,-45.1686,-512.94	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/0:70:70,0:70:2474:0:0:0,-21.0721,-222.914	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:39:20,19:20:716:19:672:-49.0667,0,-53.0275	0/0:163:163,0:163:5822:0:0:0,-49.0679,-524.091	0/1:97:43,54:43:1531:54:1936:-145.316,0,-108.882	0/0:255:255,0:255:9083:0:0:0,-76.7626,-817.449	0/0:144:144,0:144:5154:0:0:0,-43.3483,-464	0/1:63:35,28:35:1226:28:1004:-71.711,0,-91.6774	0/0:122:122,0:122:4343:0:0:0,-36.7257,-391.047	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:178:178,0:178:6370:0:0:0,-53.5833,-573.389	0/1:70:38,32:38:1342:32:1152:-82.918,0,-100.006	0/0:254:254,0:254:9056:0:0:0,-76.4616,-815.018	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.592	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.031	0/0:161:160,1:160:5726:1:32:0,-45.2665,-512.256	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:120:58,62:58:2057:62:2224:-164.301,0,-149.276	0/1:75:42,33:42:1512:33:1184:-84.2911,0,-113.797	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/1:128:71,57:71:2525:57:2021:-143.629,0,-188.969	0/1:108:31,77:31:1107:77:2766:-216.665,0,-67.4289	0/0:188:188,0:188:6698:0:0:0,-56.5936,-602.899	0/0:135:135,0:135:4781:0:0:0,-40.639,-430.448
chr08	12595029	.	T	C	17119.9	PASS	AB=0.49001;ABP=4.8326;AC=20;AF=0.106383;AN=188;AO=1047;CIGAR=1X;DP=10356;DPB=10356;DPRA=1.2368;EPP=2267.86;EPPR=20093.7;GTI=1;LEN=1;MEANALT=1;MQM=59.9656;MQMR=59.995;NS=94;NUMALT=1;ODDS=0.984409;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37306;QR=332854;RO=9308;RPL=1046;RPP=2267.86;RPPR=20093.7;RPR=1;RUN=1;SAF=0;SAP=2276.54;SAR=1047;SRF=0;SRP=20215.1;SRR=9308;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:47,1:47:1672:1:36:0,-10.8512,-147.169	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/0:159:159,0:159:5679:0:0:0,-47.8638,-511.23	0/0:228:228,0:228:8143:0:0:0,-68.6348,-732.882	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:144:144,0:144:5164:0:0:0,-43.3483,-464.9	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.425	0/0:133:131,2:131:4696:2:72:0,-33.2003,-415.948	0/0:126:126,0:126:4493:0:0:0,-37.9298,-404.539	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:151:151,0:151:5420:0:0:0,-45.4555,-487.928	0/0:106:106,0:106:3788:0:0:0,-31.9092,-341.119	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:298:298,0:298:10635:0:0:0,-89.7069,-957.065	0/0:230:229,1:229:8216:1:36:0,-65.6386,-735.851	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:177:177,0:177:6348:0:0:0,-53.2823,-571.409	0/1:94:54,40:54:1928:40:1424:-100.161,0,-145.5	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:310:153,157:153:5431:157:5615:-412.152,0,-395.6	0/0:230:230,0:230:8224:0:0:0,-69.2369,-740.173	0/1:57:25,32:25:896:32:1148:-86.4711,0,-63.8016	0/0:250:250,0:250:8976:0:0:0,-75.2575,-807.816	0/0:189:184,5:184:6604:5:180:0,-40.3426,-577.886	0/1:115:61,54:61:2151:54:1932:-139.538,0,-159.234	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/0:256:256,0:256:9184:0:0:0,-77.0637,-826.529	0/0:196:196,0:196:6981:0:0:0,-59.0019,-628.357	0/0:52:51,1:51:1828:1:36:0,-12.0553,-161.203	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:162:84,78:84:2981:78:2784:-202.034,0,-219.755	0/1:41:22,19:22:788:19:680:-49.1869,0,-58.9026	0/0:122:122,0:122:4360:0:0:0,-36.7257,-392.575	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:96:96,0:96:3413:0:0:0,-28.8989,-307.384	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/1:234:127,107:127:4537:107:3804:-271.985,0,-338.055	0/0:158:157,1:157:5598:1:36:0,-43.9645,-500.343	0/0:164:164,0:164:5853:0:0:0,-49.3689,-526.882	0/0:188:188,0:188:6704:0:0:0,-56.5936,-602.813	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:89:44,45:44:1576:45:1600:-117.499,0,-115.34	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/1:199:108,91:108:3856:91:3255:-233.266,0,-287.332	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:245:244,1:244:8714:1:36:0,-70.1541,-780.652	0/0:217:216,1:216:7732:1:36:0,-61.7252,-692.314	0/1:74:35,39:35:1248:39:1380:-102.223,0,-90.3486	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.776	0/0:220:220,0:220:7838:0:0:0,-66.2266,-705.45	0/0:161:160,1:160:5709:1:36:0,-44.8676,-510.33	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:36:19,17:19:684:17:591:-42.6782,0,-51.0532	0/0:161:161,0:161:5764:0:0:0,-48.4658,-518.875	0/1:98:43,55:43:1540:55:1961:-147.263,0,-109.392	0/0:254:253,1:253:9014:1:36:0,-72.8633,-807.64	0/0:142:142,0:142:5072:0:0:0,-42.7463,-456.626	0/1:63:34,29:34:1220:29:1036:-74.589,0,-91.1419	0/0:119:118,0:118:4216:0:0:0,-35.5215,-379.262	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:171:171,0:171:6128:0:0:0,-51.4761,-551.619	0/1:70:38,32:38:1356:32:1134:-81.2951,0,-101.268	0/0:256:256,0:256:9123:0:0:0,-77.0637,-821.044	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/0:115:114,1:114:4092:1:36:0,-31.0202,-364.866	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:161:161,0:161:5776:0:0:0,-48.4658,-519.953	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:120:58,62:58:2084:62:2198:-161.961,0,-151.706	0/1:73:41,32:41:1457:32:1140:-80.934,0,-109.449	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:127:73,54:73:2612:54:1932:-135.926,0,-197.097	0/1:108:29,79:29:1044:79:2796:-219.367,0,-61.7636	0/0:188:188,0:188:6701:0:0:0,-56.5936,-603.168	0/0:131:130,1:130:4644:1:36:0,-35.8367,-414.525
chr08	12649671	.	C	T	54513.6	PASS	AB=0.277323;ABP=3368.43;AC=102;AF=0.542553;AN=188;AO=3492;CIGAR=1X;DP=9245;DPB=9245;DPRA=19.871;EPP=7585.79;EPPR=12495.5;GTI=18;LEN=1;MEANALT=1;MQM=58.3133;MQMR=59.8646;NS=94;NUMALT=1;ODDS=0.799305;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124705;QR=204678;RO=5753;RPL=3492;RPP=7585.79;RPPR=12452.1;RPR=0;RUN=1;SAF=3492;SAP=7585.79;SAR=0;SRF=5;SRP=12452.1;SRR=5748;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:40,4:40:1412:4:140:0,-0.300742,-114.433	0/1:80:43,37:43:1536:37:1328:-95.7389,0,-114.451	0/1:254:224,30:224:8004:30:1076:-20.6545,0,-643.897	0/1:223:177,46:177:6311:46:1652:-81.7059,0,-500.75	0/1:45:38,7:38:1356:7:252:-9.38958,0,-108.794	0/1:35:15,20:15:532:20:712:-53.8347,0,-37.677	0/1:100:71,29:71:2527:29:1035:-63.3336,0,-197.577	0/1:139:81,58:81:2884:58:2076:-144.933,0,-217.954	0/1:100:77,23:77:2740:23:824:-44.3298,0,-216.741	0/1:91:52,39:52:1843:39:1391:-97.4338,0,-138.755	0/1:73:49,24:49:1718:24:860:-55.7222,0,-132.928	0/1:125:103,22:103:3676:22:784:-32.79,0,-293.416	0/1:65:53,12:53:1892:12:428:-19.2512,0,-150.977	0/1:81:56,25:56:1992:25:896:-56.5671,0,-155.171	0/1:70:54,16:54:1910:16:568:-30.2906,0,-150.12	0/1:60:49,11:49:1738:11:392:-17.4648,0,-138.641	0/1:52:28,24:28:1004:24:848:-60.8187,0,-75.0223	0/1:45:26,19:26:936:19:684:-48.2722,0,-71.0131	0/1:25:17,8:17:612:8:284:-18.3414,0,-47.8877	0/1:167:126,41:126:4493:41:1456:-80.9789,0,-354.265	0/1:137:109,28:109:3900:28:986:-47.8015,0,-309.953	1/1:51:0,51:0:0:51:1815:-163.599,-15.3525,0	0/1:84:72,12:72:2553:12:432:-13.9237,0,-204.712	0/1:108:64,44:64:2288:44:1567:-108.781,0,-173.67	0/1:68:52,16:52:1819:16:572:-31.2061,0,-143.503	1/1:362:6,356:6:212:356:12687:-1119.57,-89.5481,0	0/1:288:231,57:231:8253:57:2040:-96.9882,0,-656.081	0/1:33:24,9:24:847:9:324:-19.5682,0,-66.6147	1/1:169:1,168:1:36:168:6020:-538.15,-47.2758,0	0/1:133:77,56:77:2691:56:1980:-137.943,0,-202.397	0/1:89:63,26:63:2243:26:932:-57.2907,0,-175.341	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:15:11,4:11:392:4:144:-8.79652,0,-31.0594	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:171:3,168:3:108:168:6020:-531.719,-41.401,0	0/1:175:116,59:116:4108:59:2116:-137.804,0,-316.207	0/1:67:45,22:45:1608:22:784:-50.6073,0,-124.841	0/1:2:1,1:1:36:1:36:-2.99577,0,-2.99621	0/1:135:99,36:99:3519:36:1288:-75.5709,0,-276.282	0/1:32:23,9:23:815:9:324:-19.8251,0,-64.0378	0/1:115:97,18:97:3427:18:644:-23.6648,0,-273.97	0/1:86:42,44:42:1484:44:1550:-113.868,0,-107.471	0/1:53:36,17:36:1275:17:604:-38.7231,0,-99.0971	1/1:81:0,81:0:0:81:2892:-260.419,-24.3834,0	0/1:118:82,36:82:2916:36:1284:-80.1587,0,-227.126	0/1:201:140,61:140:4999:61:2169:-134.828,0,-389.549	0/1:122:85,37:85:2992:37:1319:-81.5495,0,-232.787	0/1:140:94,46:94:3371:46:1634:-104.6,0,-261.369	1/1:127:6,121:6:207:121:4331:-370.476,-19.3347,0	0/1:12:10,2:10:356:2:72:-3.22245,0,-28.7689	0/1:112:81,31:81:2904:31:1112:-66.6043,0,-227.88	1/1:38:3,35:3:108:35:1256:-103.241,-1.36397,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:143:111,32:111:3956:32:1139:-59.7592,0,-313.186	0/0:38:35,3:35:1234:3:108:0,-1.41229,-101.335	1/1:11:0,11:0:0:11:392:-35.6191,-3.31133,0	1/1:18:0,18:0:0:18:644:-58.2535,-5.41854,0	0/1:114:78,36:78:2779:36:1277:-80.7869,0,-216.034	0/1:147:95,52:95:3369:52:1853:-122.609,0,-259.128	0/1:6:5,1:5:176:1:36:-1.74234,0,-14.3784	1/1:189:5,184:5:172:184:6612:-578.825,-41.0771,0	0/1:247:155,92:155:5514:92:3282:-220.936,0,-421.928	0/1:95:49,46:49:1717:46:1635:-118.779,0,-126.215	0/1:99:85,14:85:3007:14:504:-15.445,0,-241.058	0/1:188:120,68:120:4274:68:2436:-162.763,0,-328.222	0/1:113:87,26:87:3086:26:936:-50.5204,0,-243.951	0/1:42:32,10:32:1140:10:351:-19.2343,0,-90.2659	0/1:83:60,23:60:2136:23:828:-49.8228,0,-166.966	1/1:127:2,125:2:72:125:4442:-393,-31.3941,0	0/1:44:27,17:27:960:17:595:-40.6181,0,-73.471	0/1:164:142,22:142:5068:22:788:-21.8354,0,-406.861	0/1:127:100,27:100:3568:27:964:-48.7398,0,-283.077	0/1:120:76,44:76:2703:44:1558:-104.029,0,-207.346	0/1:177:123,54:123:4387:54:1925:-120.02,0,-341.715	0/1:73:55,18:55:1964:18:648:-36.0098,0,-155.06	0/1:157:113,44:113:4048:44:1580:-95.138,0,-317.224	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:105:78,27:78:2784:27:968:-55.774,0,-219.193	0/1:111:84,27:84:3000:27:972:-54.2715,0,-236.803	0/1:205:155,50:155:5463:50:1796:-99.8075,0,-430.085	0/1:78:50,28:50:1779:28:1008:-67.4875,0,-136.865	0/1:87:69,18:69:2464:18:640:-31.723,0,-195.818	0/1:41:22,19:22:784:19:662:-47.4568,0,-58.5415	0/1:140:101,39:101:3595:39:1396:-83.4911,0,-281.341	0/1:34:19,15:19:672:15:540:-38.7015,0,-50.5718	0/1:96:71,25:71:2544:25:900:-52.3863,0,-200.276	0/1:85:74,11:74:2640:11:388:-9.63376,0,-212.249	0/1:48:35,13:35:1248:13:464:-27.643,0,-98.1708	0/1:127:102,25:102:3627:25:896:-42.6713,0,-288.406	0/1:73:48,25:48:1707:25:887:-58.1481,0,-131.94	0/1:166:142,24:142:5028:24:855:-27.259,0,-402.695	0/1:86:63,23:63:2246:23:820:-48.2141,0,-176.469
chr08	12649672	.	G	C	114680	PASS	AB=0.715669;ABP=2297.77;AC=115;AF=0.611702;AN=188;AO=5802;CIGAR=1X;DP=7773;DPB=7773;DPRA=5.11177;EPP=12601.9;EPPR=4280.81;GTI=12;LEN=1;MEANALT=1.01111;MQM=59.8469;MQMR=57.6391;NS=94;NUMALT=1;ODDS=0.928007;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206785;QR=69973;RO=1970;RPL=0;RPP=12601.9;RPPR=4280.81;RPR=5802;RUN=1;SAF=0;SAP=12601.9;SAR=5802;SRF=1970;SRP=4280.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	1/1:45:0,45:0:0:45:1591:-143.48,-13.5464,0	1/1:229:0,229:0:0:229:8194:-737.457,-68.9359,0	0/1:227:44,183:44:1559:183:6510:-517.289,0,-72.1413	0/1:45:7,38:7:252:38:1364:-109.514,0,-9.38958	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:101:29,72:29:1022:72:2561:-200.333,0,-61.8617	1/1:82:0,82:0:0:82:2893:-260.607,-24.6845,0	1/1:77:0,77:0:0:77:2742:-247.022,-23.1793,0	0/1:90:38,52:38:1340:52:1855:-140.136,0,-93.1554	0/1:74:24,50:24:855:50:1776:-136.825,0,-54.9692	1/1:102:0,102:0:0:102:3634:-327.237,-30.7051,0	1/1:56:0,56:0:0:56:2008:-180.958,-16.8577,0	0/1:81:26,55:26:928:55:1971:-153.281,0,-59.4448	0/1:70:17,53:17:608:53:1886:-147.682,0,-33.8894	0/1:59:10,49:10:356:49:1733:-138.492,0,-14.5533	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:26:0,26:0:0:26:923:-83.3868,-7.82678,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:170:42,127:42:1480:127:4531:-356.721,0,-82.1661	0/1:137:26,111:26:932:111:3959:-315.261,0,-42.9475	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.914	0/1:81:12,69:12:424:69:2480:-199.068,0,-14.1031	0/1:104:41,63:41:1464:63:2260:-172.355,0,-100.727	0/1:72:16,56:16:572:56:1960:-154.657,0,-30.1326	0/0:116:110,6:110:3909:6:212:0,-15.4947,-331.416	0/1:290:55,235:55:1948:235:8411:-669.65,0,-88.186	0/1:34:9,25:9:324:25:900:-71.086,0,-19.2672	0/0:47:46,1:46:1644:1:36:0,-10.5501,-144.555	0/1:130:53,77:53:1892:77:2730:-206.805,0,-130.932	0/1:92:26,66:26:923:66:2356:-184.604,0,-55.5763	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:18:4,14:4:136:14:491:-39.0574,0,-7.15584	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:44:41,3:41:1451:3:104:0,-3.54251,-121.149	0/1:173:55,118:55:1976:118:4205:-325.534,0,-125.812	1/1:47:0,47:0:0:47:1683:-151.756,-14.1484,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99577	0/1:135:37,98:37:1324:98:3504:-274.932,0,-78.8095	0/1:29:7,22:7:248:22:788:-62.5149,0,-13.8866	0/1:113:16,97:16:564:97:3463:-277.81,0,-17.067	0/1:84:43,41:43:1531:41:1472:-107.217,0,-112.717	0/1:55:20,35:20:704:35:1251:-96.3361,0,-47.1137	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.209	1/1:86:1,85:1:36:85:3018:-268.262,-22.3098,0	0/1:202:62,140:62:2211:140:5003:-389.608,0,-138.262	0/1:120:35,85:35:1234:85:3015:-235.455,0,-74.5594	0/1:141:45,96:45:1563:96:3413:-264.803,0,-98.1013	0/1:48:42,6:42:1500:6:207:-4.44663,0,-120.809	0/1:12:2,10:2:72:10:356:-28.7689,0,-3.22245	1/1:80:0,80:0:0:80:2865:-258.085,-24.0824,0	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0757	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:147:31,116:31:1096:116:4112:-326.015,0,-54.6873	1/1:38:2,36:2:72:36:1288:-109.435,-4.65064,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6241	0/1:112:35,77:35:1240:77:2735:-212.678,0,-78.0625	0/1:149:53,96:53:1883:96:3437:-264.684,0,-124.733	0/1:6:1,5:1:36:5:176:-14.3787,0,-1.74234	0/0:57:52,5:52:1856:5:176:0,-0.9741,-151.082	0/1:248:90,158:90:3168:158:5612:-430.368,0,-210.438	0/1:94:43,51:43:1532:51:1810:-134.885,0,-109.842	0/1:97:14,83:14:500:83:2950:-236.531,0,-15.6865	0/1:187:64,123:64:2283:123:4396:-339.449,0,-149.339	0/1:112:26,86:26:913:86:3084:-244.071,0,-48.748	0/1:41:9,32:9:324:32:1144:-90.9273,0,-17.115	1/1:63:0,63:0:0:63:2252:-202.386,-18.9649,0	0/0:38:37,1:37:1311:1:36:0,-7.84086,-114.615	0/1:42:15,27:15:528:27:960:-74.073,0,-35.1961	1/1:139:0,139:0:0:139:4887:-439.937,-41.8432,0	1/1:100:0,100:0:0:100:3540:-318.789,-30.103,0	0/1:119:44,75:44:1568:75:2653:-203.146,0,-105.261	0/1:173:52,121:52:1852:121:4330:-337.79,0,-114.731	1/1:55:0,55:0:0:55:1942:-175.052,-16.5567,0	1/1:118:0,118:0:0:118:4239:-381.667,-35.5215,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:109:28,81:28:1000:81:2895:-227.973,0,-57.4478	1/1:84:0,84:0:0:84:2981:-268.487,-25.2865,0	0/1:205:51,154:51:1807:154:5494:-432.873,0,-100.599	0/1:80:30,50:30:1068:50:1783:-136.668,0,-72.2819	0/1:85:17,68:17:586:68:2427:-193.098,0,-27.461	0/1:40:19,21:19:667:21:756:-56.3256,0,-48.2097	0/1:138:36,102:36:1272:102:3617:-283.922,0,-73.1687	1/1:19:0,19:0:0:19:676:-61.1395,-5.71957,0	1/1:69:0,69:0:0:69:2467:-222.279,-20.7711,0	1/1:73:0,73:0:0:73:2600:-234.239,-21.9752,0	0/1:48:11,37:11:392:37:1324:-104.938,0,-21.1664	0/1:126:24,102:24:860:102:3652:-290.954,0,-39.7338	0/1:74:26,48:26:927:48:1707:-131.638,0,-61.4458	0/1:163:23,140:23:815:140:5005:-401.525,0,-24.5633	0/1:87:22,65:22:792:65:2332:-183.905,0,-45.396
chr08	12649715	.	G	A	137671	PASS	AB=0.487389;ABP=5.03671;AC=167;AF=0.888298;AN=188;AO=6159;CIGAR=1X;DP=6925;DPB=6925;DPRA=0;EPP=13377.1;EPPR=1627.37;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.8238;MQMR=59.9303;NS=94;NUMALT=1;ODDS=4.75502;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220249;QR=27115;RO=760;RPL=6159;RPP=13377.1;RPPR=1627.37;RPR=0;RUN=1;SAF=0;SAP=13377.1;SAR=6159;SRF=0;SRP=1653.33;SRR=760;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1382:-124.678,-11.7402,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:234:0,234:0:0:234:8366:-752.932,-70.441,0	1/1:182:0,182:0:0:182:6517:-586.601,-54.7875,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:68:0,68:0:0:68:2439:-219.763,-20.47,0	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	1/1:74:0,74:0:0:74:2639:-237.756,-22.2762,0	1/1:51:0,51:0:0:51:1836:-165.52,-15.3525,0	1/1:53:0,53:0:0:53:1893:-170.647,-15.9546,0	1/1:109:1,108:1:36:108:3865:-344.378,-29.214,0	1/1:59:0,59:0:0:59:2108:-189.953,-17.7608,0	1/1:55:0,55:0:0:55:1959:-176.585,-16.5567,0	1/1:55:0,55:0:0:55:1971:-176.53,-16.5567,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:17:1,16:1:36:16:572:-48.1975,-1.51924,0	1/1:126:0,126:0:0:126:4519:-406.875,-37.9298,0	1/1:110:0,110:0:0:110:3913:-352.363,-33.1133,0	1/1:89:0,89:0:0:89:3187:-287.035,-26.7917,0	1/1:70:0,70:0:0:70:2515:-226.571,-21.0721,0	0/1:64:30,34:30:1076:34:1224:-91.2011,0,-77.8869	1/1:57:0,57:0:0:57:2043:-183.767,-17.1587,0	0/1:204:108,96:108:3855:96:3422:-246.78,0,-285.736	1/1:240:1,239:1:36:239:8563:-767.022,-68.6489,0	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	1/1:196:1,195:1:36:195:6966:-623.378,-55.4036,0	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	0/1:66:48,18:48:1698:18:648:-38.7839,0,-133.009	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:13:0,13:0:0:13:464:-42.0523,-3.91339,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	1/1:152:0,152:0:0:152:5455:-491.076,-45.7566,0	1/1:115:0,114:0:0:114:4079:-365.917,-34.3174,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:101:36,65:36:1277:65:2311:-177.846,0,-84.8271	0/1:23:13,10:13:464:10:352:-25.0945,0,-35.1738	1/1:99:0,99:0:0:99:3531:-318,-29.802,0	1/1:40:0,40:0:0:40:1435:-129.176,-12.0412,0	1/1:37:0,37:0:0:37:1321:-119.191,-11.1381,0	1/1:73:0,73:0:0:73:2592:-233.527,-21.9752,0	1/1:81:0,81:0:0:81:2912:-262.286,-24.3834,0	0/1:144:70,74:70:2491:74:2647:-195.124,0,-181.095	1/1:87:0,87:0:0:87:3119:-280.935,-26.1896,0	1/1:99:0,99:0:0:99:3548:-319.418,-29.802,0	1/1:86:0,86:0:0:86:3082:-277.538,-25.8886,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:84:46,38:46:1643:38:1364:-97.7742,0,-122.871	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:116:58,58:58:2057:58:2068:-151.472,0,-150.48	1/1:39:0,39:0:0:39:1391:-125.431,-11.7402,0	1/1:5:0,5:0:0:5:180:-16.5517,-1.50515,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:78:0,78:0:0:78:2765:-249.091,-23.4803,0	1/1:92:0,92:0:0:92:3304:-297.576,-27.6948,0	1/1:5:0,5:0:0:5:180:-16.5517,-1.50515,0	1/1:175:0,174:0:0:174:6220:-559.183,-52.3792,0	1/1:162:3,159:3:108:159:5652:-498.518,-38.6917,0	0/1:51:29,22:29:1040:22:788:-55.8923,0,-78.5618	1/1:87:0,87:0:0:87:3094:-278.685,-26.1896,0	1/1:124:1,123:1:36:123:4392:-391.479,-33.7294,0	1/1:85:0,85:0:0:85:3040:-273.829,-25.5876,0	1/1:32:0,32:0:0:32:1148:-103.601,-9.63296,0	1/1:61:0,61:0:0:61:2168:-195.045,-18.3628,0	1/1:46:0,46:0:0:46:1638:-147.549,-13.8474,0	0/1:24:12,12:12:428:12:428:-31.6341,0,-31.6341	1/1:143:0,143:0:0:143:5124:-461.209,-43.0473,0	0/1:102:36,66:36:1288:66:2349:-180.96,0,-85.4734	1/1:74:0,74:0:0:74:2652:-238.836,-22.2762,0	1/1:119:0,119:0:0:119:4245:-382.228,-35.8226,0	0/1:58:17,40:17:612:40:1440:-112.379,0,-37.8949	1/1:116:4,112:4:140:112:3997:-346.953,-21.9749,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	0/1:86:54,29:54:1918:29:1033:-67.9308,0,-147.551	1/1:151:0,151:0:0:151:5401:-486.208,-45.4555,0	1/1:49:0,49:0:0:49:1756:-158.322,-14.7505,0	1/1:68:0,68:0:0:68:2431:-219.044,-20.47,0	1/1:22:0,22:0:0:22:788:-71.2444,-6.62266,0	1/1:98:0,98:0:0:98:3511:-315.927,-29.5009,0	1/1:20:0,20:0:0:20:720:-65.1003,-6.0206,0	0/1:72:38,34:38:1364:34:1211:-87.6214,0,-101.351	0/1:73:39,34:39:1396:34:1212:-87.4005,0,-103.964	1/1:36:0,36:0:0:36:1271:-114.683,-10.8371,0	0/1:106:58,48:58:2076:48:1724:-123.536,0,-155.201	0/1:50:35,15:35:1248:15:531:-33.07,0,-97.5734	1/1:146:0,146:0:0:146:5190:-467.216,-43.9504,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0
chr08	12875872	.	GATA	AATG,AATA	179457	PASS	AB=0.519243,0.479536;ABP=8.27516,8.96494;AC=166,22;AF=0.882979,0.117021;AN=188;AO=7312,797;CIGAR=1X2M1X,1X3M;DP=8126;DPB=8126;DPRA=0,1.10403;EPP=15880.8,1733.67;EPPR=0;GTI=0;LEN=4,1;MEANALT=1.47872,2.21429;MQM=53.1525,53.3212;MQMR=0;NS=94;NUMALT=2;ODDS=4.81616;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=259497,28578;QR=0;RO=0;RPL=0,0;RPP=15880.8,1733.67;RPPR=0;RPR=7312,797;RUN=1,1;SAF=7312,797;SAP=15880.8,1733.67;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:67:0,67,0:0:0:67,0:2383,0:-214.107,-20.169,0,-214.107,-20.169,-214.107	1/1:128:0,128,0:0:0:128,0:4567,0:-410.104,-38.5318,0,-410.104,-38.5318,-410.104	1/1:119:0,119,0:0:0:119,0:4208,0:-378.011,-35.8226,0,-378.011,-35.8226,-378.011	1/1:137:0,137,0:0:0:137,0:4868,0:-436.742,-41.2411,0,-436.742,-41.2411,-436.742	1/1:76:0,76,0:0:0:76,0:2692,0:-241.73,-22.8783,0,-241.73,-22.8783,-241.73	1/1:58:0,58,0:0:0:58,0:2044,0:-183.241,-17.4597,0,-183.241,-17.4597,-183.241	1/1:119:0,119,0:0:0:119,0:4206,0:-376.283,-35.8226,0,-376.283,-35.8226,-376.283	1/1:209:0,208,1:0:0:208,1:7366,36:-659.584,-62.6142,0,-656.651,-59.3221,-656.35	1/1:122:0,122,0:0:0:122,0:4310,0:-384.685,-36.7257,0,-384.685,-36.7257,-384.685	1/1:65:0,65,0:0:0:65,0:2293,0:-205.756,-19.567,0,-205.756,-19.567,-205.756	1/1:22:0,22,0:0:0:22,0:785,0:-70.8768,-6.62266,0,-70.8768,-6.62266,-70.8768	1/1:42:0,42,0:0:0:42,0:1500,0:-134.537,-12.6433,0,-134.537,-12.6433,-134.537	1/1:39:0,39,0:0:0:39,0:1391,0:-124.919,-11.7402,0,-124.919,-11.7402,-124.919	1/1:34:0,34,0:0:0:34,0:1214,0:-109.245,-10.235,0,-109.245,-10.235,-109.245	1/1:54:0,54,0:0:0:54,0:1914,0:-172.118,-16.2556,0,-172.118,-16.2556,-172.118	1/1:39:0,39,0:0:0:39,0:1380,0:-124.331,-11.7402,0,-124.331,-11.7402,-124.331	1/1:26:0,26,0:0:0:26,0:931,0:-82.9785,-7.82678,0,-82.9785,-7.82678,-82.9785	1/1:34:0,34,0:0:0:34,0:1208,0:-108.603,-10.235,0,-108.603,-10.235,-108.603	1/1:16:0,16,0:0:0:16,0:539,0:-48.7275,-4.81648,0,-48.7275,-4.81648,-48.7275	1/1:225:0,224,0:0:0:224,0:7975,0:-713.777,-67.4307,0,-713.777,-67.4307,-713.777	1/1:197:0,197,0:0:0:197,0:6980,0:-626.697,-59.3029,0,-626.697,-59.3029,-626.697	1/1:160:0,160,0:0:0:160,0:5679,0:-509.458,-48.1648,0,-509.458,-48.1648,-509.458	1/1:86:0,85,0:0:0:85,0:3040,0:-272.04,-25.5876,0,-272.04,-25.5876,-272.04	1/2:146:0,73,72:0:0:73,72:2590,2588:-419.833,-210.464,-188.489,-209.381,0,-187.707	1/1:83:0,83,0:0:0:83,0:2952,0:-264.759,-24.9855,0,-264.759,-24.9855,-264.759	1/2:334:0,171,163:0:0:171,163:6042,5846:-966.199,-475.742,-424.266,-490.812,0,-441.744	1/1:220:0,220,0:0:0:220,0:7831,0:-702.696,-66.2266,0,-702.696,-66.2266,-702.696	1/2:18:0,10,8:0:0:10,8:348,284:-51.7108,-23.4607,-20.4504,-28.6014,0,-26.1931	1/1:239:0,239,0:0:0:239,0:8482,0:-760.784,-71.9462,0,-760.784,-71.9462,-760.784	1/1:144:0,143,1:0:0:143,1:5043,36:-451.554,-43.0473,0,-448.621,-39.7551,-448.32	1/2:94:0,35,59:0:0:35,59:1251,2124:-274.789,-172.942,-162.406,-102.204,0,-84.4435	1/2:7:0,3,4:0:0:3,4:101,144:-20.1,-11.9338,-11.0307,-8.51053,0,-7.30641	1/1:26:0,26,0:0:0:26,0:924,0:-82.7763,-7.82678,0,-82.7763,-7.82678,-82.7763	1/2:7:0,2,5:0:0:2,5:72,180:-20.8891,-15.0234,-14.4214,-6.22497,0,-4.71982	1/1:5:0,5,0:0:0:5,0:180,0:-16.5286,-1.50515,0,-16.5286,-1.50515,-16.5286	1/2:11:0,7,4:0:0:7,4:246,144:-31.9531,-12.0906,-9.98341,-20.218,0,-19.0139	1/1:138:0,138,0:0:0:138,0:4897,0:-438.493,-41.5421,0,-438.493,-41.5421,-438.493	1/1:220:0,220,0:0:0:220,0:7776,0:-697.563,-66.2266,0,-697.563,-66.2266,-697.563	1/1:26:0,26,0:0:0:26,0:936,0:-84.2863,-7.82678,0,-84.2863,-7.82678,-84.2863	1/1:5:0,5,0:0:0:5,0:169,0:-15.5073,-1.50515,0,-15.5073,-1.50515,-15.5073	1/2:93:0,52,41:0:0:52,41:1853,1471:-269.701,-119.579,-103.925,-150.477,0,-138.135	1/2:16:0,7,9:0:0:7,9:252,305:-45.0303,-24.4885,-22.3813,-20.8891,0,-18.1798	1/1:115:0,115,0:0:0:115,0:4063,0:-364.226,-34.6185,0,-364.226,-34.6185,-364.226	1/1:35:0,35,0:0:0:35,0:1243,0:-111.42,-10.5361,0,-111.42,-10.5361,-111.42	1/1:44:0,44,0:0:0:44,0:1572,0:-141.499,-13.2453,0,-141.499,-13.2453,-141.499	1/1:84:0,84,0:0:0:84,0:2989,0:-268.673,-25.2865,0,-268.673,-25.2865,-268.673	1/1:180:0,179,0:0:0:179,0:6379,0:-569.313,-53.8844,0,-569.313,-53.8844,-569.313	1/2:152:0,71,81:0:0:71,81:2527,2912:-442.02,-237.26,-215.887,-205.116,0,-180.732	1/1:123:0,123,0:0:0:123,0:4374,0:-392.795,-37.0267,0,-392.795,-37.0267,-392.795	1/1:162:0,161,0:0:0:161,0:5721,0:-513.491,-48.4658,0,-513.491,-48.4658,-513.491	1/1:182:0,179,2:0:0:179,2:6353,72:-569.793,-53.8844,0,-563.927,-48.0074,-563.325	1/1:5:0,5,0:0:0:5,0:180,0:-16.5286,-1.50515,0,-16.5286,-1.50515,-16.5286	1/2:132:0,79,53:0:0:79,53:2801,1904:-382.387,-155.136,-131.355,-227.607,0,-211.653	1/1:15:0,15,0:0:0:15,0:538,0:-48.6883,-4.51545,0,-48.6883,-4.51545,-48.6883	1/2:11:0,5,6:0:0:5,6:176,216:-32.2605,-17.9563,-16.4511,-14.6592,0,-12.853	1/2:112:0,67,45:0:0:67,45:2382,1588:-321.946,-128.892,-108.723,-193.407,0,-179.86	1/1:19:0,18,0:0:0:18,0:623,0:-55.922,-5.41854,0,-55.922,-5.41854,-55.922	1/1:4:0,4,0:0:0:4,0:144,0:-13.2947,-1.20412,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chr08	12875891	.	C	G	12628	PASS	AB=0.480173;ABP=8.52105;AC=22;AF=0.117021;AN=188;AO=788;CIGAR=1X;DP=8039;DPB=8039;DPRA=1.18483;EPP=1714.13;EPPR=15715.8;GTI=0;LEN=1;MEANALT=1.03448;MQM=53.2805;MQMR=53.1823;NS=94;NUMALT=1;ODDS=4.74999;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28262;QR=259504;RO=7248;RPL=788;RPP=1714.13;RPPR=15715.8;RPR=0;RUN=1;SAF=788;SAP=1714.13;SAR=0;SRF=7248;SRP=15741.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.167	0/0:128:128,0:128:4596:0:0:0,-38.5318,-412.569	0/0:117:117,0:117:4172:0:0:0,-35.2205,-374.103	0/0:137:137,0:137:4907:0:0:0,-41.2411,-439.737	0/0:75:75,0:75:2672:0:0:0,-22.5772,-239.891	0/0:58:58,0:58:2084:0:0:0,-17.4597,-186.063	0/0:118:118,0:118:4224:0:0:0,-35.5215,-378.076	0/0:206:205,1:205:7347:1:36:0,-58.419,-654.487	0/0:120:120,0:120:4299:0:0:0,-36.1236,-383.088	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.263	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.146	0/0:43:43,0:43:1548:0:0:0,-12.9443,-138.844	0/0:39:39,0:39:1389:0:0:0,-11.7402,-124.338	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.139	0/0:55:55,0:55:1980:0:0:0,-16.5566,-177.99	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.246	0/0:26:26,0:26:936:0:0:0,-7.82678,-83.4262	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.111	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.0671	0/0:224:224,0:224:8020:0:0:0,-67.4307,-718.706	0/0:193:193,0:193:6919:0:0:0,-58.0988,-621.014	0/0:155:155,0:155:5547:0:0:0,-46.6596,-497.482	0/0:86:86,0:86:3066:0:0:0,-25.8886,-274.402	0/1:143:72,71:72:2572:71:2552:-186.147,0,-186.69	0/0:83:83,0:83:2952:0:0:0,-24.9855,-264.723	0/1:327:168,159:168:6007:159:5712:-414.231,0,-440.353	0/0:219:219,0:219:7852:0:0:0,-65.9256,-704.239	0/1:18:10,8:10:356:8:288:-20.8116,0,-26.9191	0/0:236:236,0:236:8465:0:0:0,-71.0431,-759.085	0/0:142:141,1:141:5028:1:36:0,-39.1531,-447.278	0/1:94:35,59:35:1256:59:2120:-162.049,0,-84.89	0/1:7:3,4:3:108:4:144:-11.0307,0,-7.95367	0/0:25:25,0:25:900:0:0:0,-7.52575,-80.2125	0/1:7:2,5:2:72:5:180:-14.4214,0,-4.71982	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5286	0/1:11:7,4:7:248:4:144:-9.98341,0,-19.2533	0/0:135:135,0:135:4819:0:0:0,-40.639,-431.063	0/0:219:218,1:218:7818:1:36:0,-62.502,-697.298	0/0:26:26,0:26:932:0:0:0,-7.82678,-83.9285	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.3726	0/1:93:52,41:52:1868:41:1457:-101.973,0,-139.473	0/1:16:7,9:7:252:9:324:-22.8406,0,-18.1798	0/0:114:114,0:114:4088:0:0:0,-34.3174,-366.19	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.246	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.672	0/0:84:84,0:84:3012:0:0:0,-25.2865,-270.387	0/0:176:176,0:176:6307:0:0:0,-52.9813,-562.759	0/1:150:70,80:70:2507:80:2876:-213.492,0,-179.584	0/0:123:123,0:123:4400:0:0:0,-37.0267,-394.998	0/0:161:161,0:161:5776:0:0:0,-48.4658,-518.548	0/0:181:179,2:179:6416:2:72:0,-47.6594,-568.538	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5286	0/1:131:77,54:77:2768:54:1944:-135.247,0,-209.006	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6333	0/1:10:5,5:5:180:5:180:-13.5183,0,-13.5183	0/1:111:68,43:68:2412:43:1548:-104.854,0,-181.945	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.1372	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2947	0/0:15:14,0:14:504:0:0:0,-4.21442,-45.3311	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.028	0/0:87:85,2:85:3048:2:72:0,-19.3626,-266.311	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2947	0/0:146:146,0:146:5223:0:0:0,-43.9504,-468.262	0/0:228:222,5:222:7941:5:180:0,-52.14,-695.496	0/1:79:53,26:53:1888:26:921:-59.3084,0,-146.118	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.153	0/0:180:180,0:180:6451:0:0:0,-54.1854,-577.695	0/0:120:120,0:120:4320:0:0:0,-36.1236,-386.236	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.446	0/0:74:74,0:74:2642:0:0:0,-22.2762,-236.539	0/0:50:49,0:49:1760:0:0:0,-14.7505,-157.497	0/1:15:8,7:8:288:7:238:-17.1993,0,-21.7147	0/0:106:106,0:106:3783:0:0:0,-31.9092,-338.862	0/1:75:31,44:31:1108:44:1584:-119.619,0,-76.9513	0/0:133:133,0:133:4730:0:0:0,-40.037,-424.511	0/0:155:155,0:155:5544:0:0:0,-46.6596,-496.832	0/1:120:71,49:71:2552:49:1764:-122.232,0,-193.072	0/0:103:102,1:102:3643:1:36:0,-27.4129,-323.383	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.3995	0/0:128:128,0:128:4596:0:0:0,-38.5318,-412.607	0/1:61:33,28:33:1184:28:1004:-72.1796,0,-87.879	0/0:275:275,0:275:9842:0:0:0,-82.7832,-881.515	0/0:59:59,0:59:2120:0:0:0,-17.7608,-189.202	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.1965	0/0:36:36,0:36:1288:0:0:0,-10.8371,-115.684	0/0:80:80,0:80:2859:0:0:0,-24.0824,-255.863	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.5687	0/1:41:19,22:19:680:22:779:-57.9937,0,-48.6822	0/1:41:18,23:18:644:23:819:-61.5872,0,-45.4073	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.7591	0/1:40:23,17:23:828:17:608:-42.786,0,-62.615	0/1:24:7,17:7:252:17:608:-47.68,0,-15.7716	0/0:71:71,0:71:2524:0:0:0,-21.3731,-226.716	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.019
chr08	13033890	.	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chr08	13077852	.	C	T	64654.9	PASS	AB=0.503641;ABP=3.10517;AC=163;AF=0.867021;AN=188;AO=2936;CIGAR=1X;DP=3353;DPB=3353;DPRA=18.2011;EPP=6343.76;EPPR=908.514;GTI=3;LEN=1;MEANALT=1;MQM=59.9775;MQMR=60;NS=94;NUMALT=1;ODDS=3.15611;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104034;QR=14867;RO=417;RPL=2932;RPP=6343.76;RPPR=908.514;RPR=4;RUN=1;SAF=0;SAP=6378.45;SAR=2936;SRF=0;SRP=908.514;SRR=417;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:948:-85.6346,-8.12781,0	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	1/1:76:0,76:0:0:76:2700:-243.246,-22.8783,0	1/1:80:0,80:0:0:80:2831:-255.03,-24.0824,0	1/1:30:0,30:0:0:30:1063:-95.9815,-9.0309,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:50:0,50:0:0:50:1776:-160.123,-15.0515,0	1/1:35:0,35:0:0:35:1226:-110.642,-10.5361,0	1/1:34:0,34:0:0:34:1200:-108.306,-10.235,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:30:0,30:0:0:30:1060:-95.7113,-9.0309,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:19:0,19:0:0:19:666:-60.2641,-5.71957,0	1/1:19:0,19:0:0:19:665:-60.1736,-5.71957,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:89:0,89:0:0:89:3139:-282.739,-26.7917,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:52:0,52:0:0:52:1852:-166.96,-15.6536,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:29:9,20:9:315:20:699:-54.5026,0,-19.9574	1/1:41:0,41:0:0:41:1457:-131.426,-12.3422,0	0/1:90:48,42:48:1716:42:1484:-106.759,0,-127.633	1/1:79:0,79:0:0:79:2816:-253.68,-23.7814,0	0/1:6:2,4:2:72:4:136:-10.7694,0,-5.03054	1/1:137:0,137:0:0:137:4815:-433.508,-41.2411,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:38:25,13:25:883:13:460:-30.2962,0,-68.3483	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:9:2,7:2:72:7:252:-20.3134,0,-4.12745	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:55:0,55:0:0:55:1960:-176.675,-16.5567,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:113:55,58:55:1972:58:2051:-150.845,0,-143.738	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	1/1:74:0,74:0:0:74:2589:-233.258,-22.2762,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:63:0,63:0:0:63:2218:-199.882,-18.9649,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	0/1:106:50,56:50:1788:56:1984:-146.925,0,-129.293	1/1:40:0,40:0:0:40:1396:-125.933,-12.0412,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:54:0,54:0:0:54:1914:-172.538,-16.2556,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:126:80,46:80:2855:46:1636:-109.599,0,-219.258	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:43:21,22:21:752:22:773:-56.9452,0,-55.062	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:31:0,31:0:0:31:1095:-98.8583,-9.33193,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:77:0,77:0:0:77:2733:-246.212,-23.1793,0	1/1:72:1,71:1:36:71:2509:-222.464,-18.0759,0	0/1:23:11,12:11:392:12:416:-30.8479,0,-28.6964	1/1:51:0,51:0:0:51:1807:-162.908,-15.3525,0	1/1:42:1,41:1:36:41:1465:-128.548,-9.04499,0	1/1:54:0,54:0:0:54:1907:-171.907,-16.2556,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:11:6,5:6:212:5:176:-12.8737,0,-16.1135	1/1:67:0,67:0:0:67:2376:-214.099,-20.169,0	0/1:38:17,21:17:608:21:736:-55.1227,0,-43.6129	1/1:47:1,46:1:32:46:1648:-145.409,-10.9491,0	1/1:67:0,67:0:0:67:2375:-214.007,-20.169,0	0/1:30:17,13:17:603:13:460:-32.7045,0,-45.5686	1/1:24:0,24:0:0:24:844:-76.2789,-7.22472,0	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	1/1:55:0,55:0:0:55:1945:-175.317,-16.5567,0	0/1:26:12,14:12:428:14:496:-37.1475,0,-31.032	1/1:82:1,81:1:36:81:2876:-255.48,-21.0862,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:21:2,19:2:72:19:672:-54.4852,0,-0.515092	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:40:0,40:0:0:40:1419:-128.007,-12.0412,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:24:11,13:11:392:13:468:-35.2349,0,-28.3953	0/1:31:11,20:11:392:20:716:-55.4358,0,-26.2881	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:28:9,19:9:324:19:676:-52.7392,0,-21.077	0/1:15:11,4:11:379:4:144:-8.79817,0,-29.9251	1/1:35:0,35:0:0:35:1231:-111.081,-10.5361,0	1/1:27:0,27:0:0:27:948:-85.6332,-8.12781,0
chr08	13077966	.	C	T	160370	PASS	AB=0.446138;ABP=52.6011;AC=166;AF=0.882979;AN=188;AO=7264;CIGAR=1X;DP=8375;DPB=8375;DPRA=0;EPP=15776.6;EPPR=2393.81;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.9876;MQMR=59.9964;NS=94;NUMALT=1;ODDS=0.182355;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258316;QR=39147;RO=1105;RPL=7264;RPP=15776.6;RPPR=2402.49;RPR=0;RUN=1;SAF=7264;SAP=15776.6;SAR=0;SRF=1104;SRP=2393.81;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:130:0,130:0:0:130:4597:-413.841,-39.1339,0	1/1:111:0,111:0:0:111:3952:-355.871,-33.4143,0	1/1:103:0,103:0:0:103:3660:-329.605,-31.0061,0	1/1:51:0,51:0:0:51:1810:-163.18,-15.3525,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:82:0,82:0:0:82:2918:-262.855,-24.6845,0	1/1:116:0,116:0:0:116:4130:-371.885,-34.9195,0	1/1:38:0,38:0:0:38:1349:-121.709,-11.4391,0	1/1:102:0,102:0:0:102:3645:-328.253,-30.7051,0	1/1:77:0,77:0:0:77:2736:-246.482,-23.1793,0	1/1:80:0,80:0:0:80:2789:-251.249,-24.0824,0	1/1:79:0,79:0:0:79:2811:-253.23,-23.7814,0	1/1:78:0,77:0:0:77:2744:-246.843,-23.1793,0	1/1:66:0,66:0:0:66:2334:-210.319,-19.868,0	1/1:54:0,54:0:0:54:1918:-172.896,-16.2556,0	1/1:81:0,81:0:0:81:2895:-260.786,-24.3834,0	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	1/1:223:0,223:0:0:223:7961:-716.513,-67.1297,0	1/1:103:0,102:0:0:102:3605:-324.297,-30.7051,0	1/1:131:0,131:0:0:131:4679:-421.272,-39.4349,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:104:55,49:55:1967:49:1735:-125.125,0,-145.997	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	0/1:327:174,153:174:6133:153:5413:-388.864,0,-453.638	1/1:152:0,152:0:0:152:5440:-489.726,-45.7566,0	0/1:33:12,21:12:406:21:737:-56.7166,0,-26.9302	1/1:293:0,293:0:0:293:10403:-936.185,-88.2018,0	1/1:108:2,104:2:68:104:3670:-324.071,-25.7639,0	0/1:135:75,60:75:2644:60:2143:-152.498,0,-197.564	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:195:0,195:0:0:195:6928:-623.588,-58.7009,0	1/1:186:1,185:1:36:185:6603:-590.751,-52.3933,0	1/1:76:0,76:0:0:76:2705:-243.693,-22.8783,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:88:61,27:61:2188:27:946:-58.9622,0,-170.695	0/1:60:36,24:36:1288:24:853:-59.0284,0,-98.1618	1/1:115:0,115:0:0:115:4072:-366.666,-34.6185,0	1/1:87:0,87:0:0:87:3095:-278.778,-26.1896,0	1/1:88:0,88:0:0:88:3127:-281.657,-26.4906,0	1/1:73:0,73:0:0:73:2607:-234.878,-21.9752,0	1/1:123:0,123:0:0:123:4395:-395.723,-37.0267,0	0/1:200:114,86:114:4050:86:3052:-214.703,0,-304.483	1/1:58:0,57:0:0:57:2021:-181.802,-17.1587,0	1/1:152:0,152:0:0:152:5449:-490.537,-45.7566,0	1/1:133:0,133:0:0:133:4742:-426.939,-40.037,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:137:68,69:68:2395:69:2462:-180.592,0,-174.564	1/1:42:1,41:1:27:41:1476:-130.436,-9.94348,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:156:93,63:93:3294:63:2255:-156.252,0,-249.717	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:38:0,38:0:0:38:1348:-121.619,-11.4391,0	1/1:147:1,146:1:32:146:5181:-463.231,-41.0521,0	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	1/1:255:0,255:0:0:255:9041:-813.671,-76.7627,0	1/1:153:3,150:3:108:150:5356:-472.099,-35.9824,0	0/1:72:32,40:32:1114:40:1406:-105.16,0,-78.8915	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:144:3,141:3:108:141:5017:-441.602,-33.2732,0	1/1:66:0,66:0:0:66:2360:-212.168,-19.868,0	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	1/1:57:0,57:0:0:57:2020:-182.071,-17.1587,0	1/1:66:0,66:0:0:66:2342:-211.039,-19.868,0	0/1:21:11,10:11:387:10:360:-26.4227,0,-28.8443	1/1:33:0,33:0:0:33:1162:-104.884,-9.93399,0	0/1:41:18,23:18:635:23:824:-62.1411,0,-45.1347	1/1:124:0,123:0:0:123:4370:-393.153,-37.0267,0	1/1:165:0,165:0:0:165:5896:-530.749,-49.67,0	0/1:88:47,41:47:1651:41:1460:-105.205,0,-122.384	1/1:92:0,92:0:0:92:3253:-292.99,-27.6948,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:135:0,135:0:0:135:4833:-435.123,-40.6391,0	0/1:125:77,48:77:2752:48:1720:-117.457,0,-210.294	1/1:234:4,230:4:144:230:8173:-722.274,-57.1274,0	1/1:81:0,81:0:0:81:2856:-257.277,-24.3834,0	1/1:57:0,57:0:0:57:2027:-182.701,-17.1587,0	1/1:79:0,79:0:0:79:2799:-252.151,-23.7814,0	1/1:152:0,152:0:0:152:5367:-483.165,-45.7566,0	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	0/1:77:38,39:38:1345:39:1394:-102.58,0,-98.1688	0/1:88:46,42:46:1639:42:1504:-109.164,0,-121.307	1/1:54:0,54:0:0:54:1912:-172.356,-16.2556,0	0/1:116:71,45:71:2516:45:1583:-107.839,0,-191.774	0/1:71:47,24:47:1684:24:838:-54.3632,0,-130.472	1/1:136:0,136:0:0:136:4835:-435.304,-40.9401,0	1/1:102:0,102:0:0:102:3617:-325.737,-30.7051,0
chr08	13137557	.	G	C	173469	PASS	AB=0.471169;ABP=16.9089;AC=166;AF=0.882979;AN=188;AO=7983;CIGAR=1X;DP=9024;DPB=9024;DPRA=0;EPP=17337.9;EPPR=2252.66;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.984;MQMR=59.945;NS=94;NUMALT=1;ODDS=8.83779;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=280050;QR=36543;RO=1036;RPL=7983;RPP=17337.9;RPPR=2252.66;RPR=0;RUN=1;SAF=7983;SAP=17337.9;SAR=0;SRF=1036;SRP=2252.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:69:0,68:0:0:68:2357:-212.127,-20.47,0	1/1:53:0,53:0:0:53:1876:-169.118,-15.9546,0	1/1:254:0,254:0:0:254:8930:-803.696,-76.4616,0	1/1:197:0,195:0:0:195:6880:-618.916,-58.7009,0	1/1:54:1,53:1:36:53:1854:-163.54,-12.6573,0	1/1:43:0,43:0:0:43:1524:-137.45,-12.9443,0	1/1:91:0,91:0:0:91:3215:-289.574,-27.3937,0	1/1:125:0,125:0:0:125:4405:-396.625,-37.6288,0	1/1:105:3,102:3:104:102:3536:-308.749,-21.9053,0	1/1:70:0,70:0:0:70:2504:-225.612,-21.0721,0	1/1:68:0,68:0:0:68:2348:-211.576,-20.47,0	1/1:112:0,112:0:0:112:3880:-349.398,-33.7154,0	1/1:85:0,85:0:0:85:2948:-265.551,-25.5876,0	1/1:62:0,62:0:0:62:2177:-195.926,-18.6639,0	1/1:80:0,80:0:0:80:2794:-251.701,-24.0824,0	1/1:95:0,95:0:0:95:3319:-298.932,-28.5979,0	1/1:38:0,38:0:0:38:1317:-118.825,-11.4391,0	1/1:31:0,31:0:0:31:1074:-96.9665,-9.33193,0	1/1:47:0,47:0:0:47:1623:-146.354,-14.1484,0	1/1:125:0,125:0:0:125:4377:-394.106,-37.6288,0	1/1:108:0,108:0:0:108:3803:-342.471,-32.5112,0	1/1:117:0,117:0:0:117:4061:-365.68,-35.2205,0	1/1:112:0,112:0:0:112:3972:-357.672,-33.7154,0	0/1:59:31,28:31:1078:28:991:-71.7428,0,-79.5636	1/1:92:0,92:0:0:92:3241:-291.911,-27.6948,0	0/1:244:127,117:127:4478:117:4133:-298.705,0,-329.633	1/1:242:0,242:0:0:242:8487:-763.842,-72.8493,0	0/1:29:17,12:17:600:12:428:-30.1289,0,-45.5993	1/1:262:1,261:1:36:261:9194:-823.832,-75.2716,0	1/1:166:1,165:1:36:165:5865:-524.366,-46.3727,0	0/1:81:42,39:42:1508:39:1383:-100.385,0,-111.631	0/1:15:9,6:9:315:6:216:-15.2751,0,-24.1718	1/1:33:0,33:0:0:33:1152:-103.983,-9.93399,0	0/1:10:6,4:6:212:4:131:-9.10317,0,-16.4145	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	0/1:19:11,8:11:392:8:284:-20.1838,0,-29.9005	1/1:194:0,194:0:0:194:6744:-607.049,-58.3998,0	1/1:181:0,181:0:0:181:6351:-571.689,-54.4864,0	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:107:53,54:53:1883:54:1919:-140.776,0,-137.538	0/1:26:13,13:13:468:13:452:-33.1843,0,-34.6329	1/1:198:1,197:1:36:197:6863:-614.15,-56.0057,0	1/1:47:0,47:0:0:47:1644:-148.238,-14.1484,0	1/1:54:0,54:0:0:54:1782:-160.65,-16.2556,0	1/1:124:0,124:0:0:124:4360:-392.575,-37.3277,0	1/1:129:0,129:0:0:129:4579:-412.277,-38.8329,0	0/1:199:113,86:113:3990:86:3008:-211.046,0,-299.387	1/1:115:1,114:1:36:114:4003:-356.867,-31.0202,0	1/1:91:0,91:0:0:91:3210:-289.122,-27.3937,0	1/1:97:1,96:1:32:96:3326:-296.359,-26.0006,0	1/1:19:0,19:0:0:19:649:-58.7281,-5.71957,0	0/1:150:80,70:80:2826:70:2447:-175.33,0,-209.426	1/1:73:0,73:0:0:73:2584:-232.808,-21.9752,0	0/1:27:12,15:12:428:15:536:-40.447,0,-30.731	0/1:161:80,81:80:2790:81:2874:-210.431,0,-202.871	1/1:66:0,66:0:0:66:2303:-207.527,-19.868,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	1/1:92:0,92:0:0:92:3286:-295.959,-27.6948,0	1/1:118:2,116:2:57:116:4075:-361.528,-30.1084,0	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	1/1:170:0,170:0:0:170:5977:-538.042,-51.1751,0	1/1:170:0,170:0:0:170:5968:-537.231,-51.1751,0	0/1:68:23,45:23:816:45:1548:-119.135,0,-53.2917	1/1:87:0,87:0:0:87:3004:-270.591,-26.1896,0	1/1:210:0,210:0:0:210:7397:-665.784,-63.2163,0	1/1:186:4,182:4:144:182:6441:-566.468,-42.678,0	1/1:43:0,43:0:0:43:1493:-134.661,-12.9443,0	1/1:58:0,58:0:0:58:2038:-183.691,-17.4597,0	1/1:47:0,47:0:0:47:1651:-148.877,-14.1484,0	0/1:24:11,13:11:396:13:443:-32.9708,0,-28.6711	1/1:149:0,149:0:0:149:5169:-465.359,-44.8535,0	0/1:80:43,37:43:1527:37:1301:-93.3069,0,-113.632	1/1:132:0,132:0:0:132:4679:-421.27,-39.736,0	1/1:140:0,140:0:0:140:4942:-444.932,-42.1442,0	0/1:191:111,80:111:3951:80:2846:-198.882,0,-298.286	1/1:91:0,91:0:0:91:3236:-291.463,-27.3937,0	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	1/1:83:0,83:0:0:83:2890:-260.333,-24.9855,0	0/1:94:50,44:50:1771:44:1531:-109.782,0,-131.376	1/1:207:4,203:4:144:203:7155:-630.695,-48.9996,0	1/1:72:0,72:0:0:72:2542:-229.031,-21.6742,0	1/1:110:0,110:0:0:110:3854:-347.059,-33.1133,0	1/1:48:0,48:0:0:48:1609:-145.088,-14.4494,0	1/1:131:0,131:0:0:131:4615:-415.517,-39.4349,0	1/1:28:0,28:0:0:28:991:-89.5035,-8.42884,0	0/1:81:39,42:39:1325:42:1453:-106.679,0,-95.1593	0/1:72:37,35:37:1284:35:1241:-90.3194,0,-94.1837	1/1:50:0,50:0:0:50:1722:-155.261,-15.0515,0	0/1:112:55,55:55:1944:55:1915:-139.151,0,-141.763	0/1:76:53,23:53:1864:23:795:-48.9885,0,-145.159	1/1:106:0,106:0:0:106:3652:-328.887,-31.9092,0	1/1:111:1,110:1:36:110:3856:-343.64,-29.8161,0
chr08	13137558	.	T	C	15498	PASS	AB=0.515844;ABP=7.20773;AC=22;AF=0.117021;AN=188;AO=1010;CIGAR=1X;DP=9177;DPB=9177;DPRA=1.1071;EPP=2196.2;EPPR=17733.1;GTI=0;LEN=1;MEANALT=1.03125;MQM=59.9475;MQMR=59.9832;NS=94;NUMALT=1;ODDS=10.9599;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34613;QR=290083;RO=8165;RPL=1010;RPP=2196.2;RPPR=17733.1;RPR=0;RUN=1;SAF=1010;SAP=2196.2;SAR=0;SRF=8165;SRP=17733.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:72:72,0:72:2533:0:0:0,-21.6742,-228.221	0/0:53:52,0:52:1851:0:0:0,-15.6536,-166.617	0/0:260:260,0:260:9218:0:0:0,-78.2678,-829.586	0/0:201:201,0:201:7137:0:0:0,-60.507,-642.389	0/0:57:56,1:56:1993:1:36:0,-13.5604,-176.044	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:92:92,0:92:3274:0:0:0,-27.6948,-294.88	0/0:128:128,0:128:4550:0:0:0,-38.5318,-409.669	0/0:108:105,3:105:3692:3:93:0,-23.8345,-323.802	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:68:67,1:67:2380:1:34:0,-17.0711,-211.06	0/0:114:114,0:114:4045:0:0:0,-34.3174,-364.223	0/0:88:88,0:88:3135:0:0:0,-26.4906,-282.368	0/0:63:63,0:63:2211:0:0:0,-18.9649,-199.241	0/0:81:81,0:81:2861:0:0:0,-24.3834,-257.728	0/0:95:95,0:95:3399:0:0:0,-28.5978,-306.124	0/0:38:38,0:38:1332:0:0:0,-11.4391,-120.177	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/0:130:130,0:130:4606:0:0:0,-39.1339,-414.705	0/0:117:117,0:117:4136:0:0:0,-35.2205,-372.426	0/0:118:118,0:118:4211:0:0:0,-35.5215,-379.171	0/0:113:113,0:113:4011:0:0:0,-34.0164,-361.179	0/1:57:28,29:28:1008:29:1002:-73.33,0,-73.8776	0/0:90:90,0:90:3215:0:0:0,-27.0927,-289.572	0/1:248:121,127:121:4319:127:4368:-318.642,0,-314.231	0/0:247:247,0:247:8747:0:0:0,-74.3544,-787.228	0/1:30:12,18:12:428:18:604:-45.6441,0,-29.8279	0/0:265:263,2:263:9377:2:72:0,-72.9362,-837.058	0/0:167:166,1:166:5899:1:36:0,-46.6737,-527.421	0/1:86:43,43:43:1531:43:1501:-109.492,0,-112.194	0/1:15:6,9:6:212:9:324:-24.9904,0,-14.9093	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:10:4,6:4:140:6:207:-15.9566,0,-9.93428	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/1:19:9,10:9:315:10:343:-25.481,0,-22.9677	0/0:194:194,0:194:6861:0:0:0,-58.3998,-617.564	0/0:187:187,0:187:6646:0:0:0,-56.2926,-598.218	0/0:51:51,0:51:1814:0:0:0,-15.3525,-163.54	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:111:57,54:57:2014:54:1831:-131.649,0,-148.118	0/1:25:13,12:13:459:12:424:-30.9707,0,-34.1183	0/0:204:204,0:204:7259:0:0:0,-61.4101,-653.363	0/0:46:46,0:46:1633:0:0:0,-13.8474,-147.257	0/0:54:54,0:54:1884:0:0:0,-16.2556,-169.836	0/0:125:125,0:125:4443:0:0:0,-37.6287,-400.041	0/0:133:133,0:133:4719:0:0:0,-40.037,-424.87	0/1:196:86,110:86:3037:110:3801:-283.291,0,-214.559	0/0:118:117,1:117:4188:1:36:0,-31.9233,-373.503	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.934	0/0:99:97,1:97:3458:1:32:0,-26.6315,-308.223	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/1:142:71,71:71:2532:71:2415:-174.855,0,-185.386	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.947	0/1:28:15,13:15:540:13:436:-31.131,0,-40.5077	0/1:164:86,78:86:3070:78:2668:-190.998,0,-227.159	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.858	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:96:96,0:96:3408:0:0:0,-28.8989,-306.934	0/0:120:119,1:119:4238:1:32:0,-32.9243,-378.401	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:173:173,0:173:6126:0:0:0,-52.0782,-551.442	0/0:174:174,0:174:6198:0:0:0,-52.3792,-557.92	0/1:64:44,20:44:1560:20:703:-44.3276,0,-121.426	0/0:92:92,0:92:3278:0:0:0,-27.6948,-295.24	0/0:211:211,0:211:7502:0:0:0,-63.5173,-675.223	0/0:194:190,4:190:6770:4:144:0,-45.0862,-596.06	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.453	0/0:62:62,0:62:2192:0:0:0,-18.6639,-197.544	0/0:45:45,0:45:1596:0:0:0,-13.5463,-143.93	0/1:24:13,11:13:464:11:381:-27.3786,0,-34.8728	0/0:159:159,0:159:5648:0:0:0,-47.8638,-508.443	0/1:81:36,45:36:1279:45:1568:-117.017,0,-91.029	0/0:135:135,0:135:4785:0:0:0,-40.639,-430.721	0/0:145:145,0:145:5183:0:0:0,-43.6493,-466.61	0/1:195:84,111:84:3003:111:3833:-286.47,0,-211.8	0/0:90:90,0:90:3213:0:0:0,-27.0927,-288.964	0/0:31:31,0:31:1088:0:0:0,-9.33193,-98.2265	0/0:87:87,0:87:3100:0:0:0,-26.1896,-279.226	0/1:95:45,50:45:1590:50:1729:-127.295,0,-114.777	0/0:216:214,2:214:7539:2:72:0,-58.1858,-671.715	0/0:73:73,0:73:2599:0:0:0,-21.9752,-234.159	0/0:109:109,0:109:3881:0:0:0,-32.8123,-349.485	0/0:49:49,0:49:1713:0:0:0,-14.7505,-154.453	0/0:136:136,0:136:4848:0:0:0,-40.9401,-436.474	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/1:81:45,36:45:1595:36:1173:-81.4796,0,-119.456	0/1:68:34,34:34:1212:34:1134:-81.8874,0,-88.9163	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/1:115:58,57:58:2048:57:1930:-139.356,0,-149.966	0/1:71:22,49:22:775:49:1651:-127.498,0,-48.6981	0/0:108:108,0:108:3833:0:0:0,-32.5112,-345.168	0/0:113:113,0:113:4043:0:0:0,-34.0164,-364.057
chr08	13572891	.	C	T	7328.4	PASS	AB=0.491448;ABP=3.56741;AC=22;AF=0.117021;AN=188;AO=434;CIGAR=1X;DP=4434;DPB=4434;DPRA=0.812635;EPP=877.223;EPPR=8169.06;GTI=1;LEN=1;MEANALT=1;MQM=59.5046;MQMR=59.9917;NS=94;NUMALT=1;ODDS=4.07003;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15547;QR=143021;RO=3997;RPL=426;RPP=877.223;RPPR=8177.48;RPR=8;RUN=1;SAF=0;SAP=945.429;SAR=434;SRF=1;SRP=8673.7;SRR=3996;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.87	0/0:113:113,0:113:4021:0:0:0,-34.0164,-362.079	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:39:38,0:38:1351:0:0:0,-11.4391,-121.53	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:105:105,0:105:3745:0:0:0,-31.6081,-337.249	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:34:34,0:34:1211:0:0:0,-10.235,-109.296	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:24:11,13:11:383:13:464:-34.8728,0,-27.5785	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:109:45,64:45:1600:64:2302:-174.612,0,-111.478	0/0:119:119,0:119:4280:0:0:0,-35.8226,-385.376	0/1:20:9,11:9:324:11:396:-29.9621,0,-22.62	0/0:137:137,0:137:4896:0:0:0,-41.2411,-440.79	0/0:47:44,3:44:1576:3:108:0,-4.07324,-132.056	0/1:44:27,17:27:968:17:608:-41.8067,0,-74.192	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:36:17,19:17:612:19:680:-50.6839,0,-44.5764	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	0/0:93:92,0:92:3296:0:0:0,-27.6948,-296.657	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/1:99:49,50:49:1742:50:1781:-130.753,0,-127.261	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:53:53,0:53:1899:0:0:0,-15.9546,-171.187	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:79:41,38:41:1468:38:1364:-99.2335,0,-108.635	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:58:29,29:29:1040:29:1040:-76.4182,0,-76.4546	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/0:75:75,0:75:2691:0:0:0,-22.5772,-242.434	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/0:74:74,0:74:2634:0:0:0,-22.2762,-237.306	0/1:22:18,4:18:644:4:136:-5.6733,0,-51.6679	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.213	0/0:19:19,0:19:666:0:0:0,-5.71957,-60.2636	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	0/0:153:153,0:153:5463:0:0:0,-46.0576,-491.799	0/1:34:21,13:21:752:13:464:-31.8509,0,-57.7712	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/1:58:38,20:38:1359:20:716:-47.2998,0,-105.15	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/1:44:26,18:26:936:18:644:-45.0429,0,-71.3141	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.735	0/0:37:36,0:36:1296:0:0:0,-10.8371,-116.584	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:45:18,27:18:644:27:972:-74.2516,0,-44.7442	0/1:51:29,22:29:1040:22:792:-56.2531,0,-78.5618	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:56:25,31:25:892:31:1108:-83.1595,0,-63.742	0/1:26:8,18:8:288:18:644:-50.3323,0,-18.4406	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73
chr08	13572897	.	C	T	7008.92	PASS	AB=0.491429;ABP=3.56868;AC=22;AF=0.117021;AN=188;AO=433;CIGAR=1X;DP=4468;DPB=4468;DPRA=0.802644;EPP=943.258;EPPR=8628.58;GTI=2;LEN=1;MEANALT=1;MQM=59.448;MQMR=60;NS=94;NUMALT=1;ODDS=3.50855;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15535;QR=144214;RO=4032;RPL=433;RPP=943.258;RPPR=8637.21;RPR=0;RUN=1;SAF=0;SAP=943.258;SAR=433;SRF=1;SRP=8749.7;SRR=4031;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:116:116,0:116:4152:0:0:0,-34.9195,-373.863	0/0:73:73,0:73:2589:0:0:0,-21.9752,-233.258	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:104:104,0:104:3719:0:0:0,-31.3071,-334.911	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:60:60,0:60:2131:0:0:0,-18.0618,-192.058	0/0:55:55,0:55:1954:0:0:0,-16.5566,-176.134	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:107:44,63:44:1557:63:2268:-172.15,0,-108.209	0/0:122:121,0:121:4335:0:0:0,-36.4246,-389.965	0/1:20:8,12:8:288:12:432:-32.338,0,-20.2468	0/0:141:141,0:141:5035:0:0:0,-42.4452,-453.297	0/0:47:44,3:44:1576:3:108:0,-4.07324,-132.056	0/1:44:27,17:27:964:17:612:-42.1681,0,-73.8315	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:36:17,19:17:597:19:684:-51.0451,0,-43.219	0/1:32:15,17:15:536:17:612:-45.7805,0,-38.9419	0/0:92:92,0:92:3287:0:0:0,-27.6948,-296.049	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:59:59,0:59:2099:0:0:0,-17.7608,-189.179	0/1:97:48,49:48:1724:49:1764:-129.729,0,-126.245	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:53:52,0:52:1864:0:0:0,-15.6536,-167.68	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:81:40,41:40:1428:41:1468:-107.985,0,-104.434	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:57:29,28:29:1044:28:1004:-73.4795,0,-77.1161	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:89:89,0:89:3183:0:0:0,-26.7917,-286.693	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:77:77,0:77:2759:0:0:0,-23.1793,-248.551	0/1:23:19,4:19:684:4:125:-4.60262,0,-54.9666	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/0:154:154,0:154:5523:0:0:0,-46.3586,-497.194	0/1:34:21,13:21:752:13:468:-32.213,0,-57.7712	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:93:93,0:93:3326:0:0:0,-27.9958,-299.557	0/1:57:37,20:37:1328:20:710:-47.0651,0,-102.664	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:45:27,18:27:957:18:644:-44.7433,0,-72.8975	0/0:87:86,0:86:3088:0:0:0,-25.8886,-277.787	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:29:29,0:29:1015:0:0:0,-8.72987,-91.6609	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:46:18,28:18:648:28:1008:-77.189,0,-44.8045	0/1:51:30,21:30:1080:21:756:-53.0147,0,-82.1607	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:55:26,29:26:932:29:1044:-77.7089,0,-67.6422	0/1:26:8,18:8:288:18:644:-50.3323,0,-18.4406	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73
chr08	13572909	.	C	G	7039.49	PASS	AB=0.492063;ABP=3.49285;AC=22;AF=0.117021;AN=188;AO=437;CIGAR=1X;DP=4504;DPB=4504;DPRA=0.804354;EPP=951.944;EPPR=8823.53;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.5217;MQMR=59.9985;NS=94;NUMALT=1;ODDS=0.707401;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15639;QR=145088;RO=4062;RPL=437;RPP=951.944;RPPR=8823.53;RPR=0;RUN=1;SAF=0;SAP=951.944;SAR=437;SRF=0;SRP=8823.53;SRR=4062;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:42:42,0:42:1478:0:0:0,-12.6433,-133.31	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:106:106,0:106:3797:0:0:0,-31.9092,-341.926	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:71:71,0:71:2506:0:0:0,-21.3731,-225.79	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.533	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:110:46,64:46:1622:64:2289:-173.135,0,-113.152	0/0:123:123,0:123:4394:0:0:0,-37.0267,-395.63	0/1:20:8,11:8:288:11:396:-29.9904,0,-20.2724	0/0:142:142,0:142:5047:0:0:0,-42.7463,-454.374	0/0:49:46,3:46:1621:3:108:0,-4.6753,-136.1	0/1:44:27,17:27:972:17:612:-42.1681,0,-74.5526	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:102:102,0:102:3653:0:0:0,-30.7051,-328.972	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.145	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:36:17,19:17:612:19:676:-50.329,0,-44.5764	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	0/0:93:93,0:93:3290:0:0:0,-27.9958,-296.319	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:59:59,0:59:2109:0:0:0,-17.7608,-190.077	0/0:62:62,0:62:2175:0:0:0,-18.6639,-196.012	0/1:99:49,50:49:1760:50:1792:-131.645,0,-128.882	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/0:91:88,0:88:3145:0:0:0,-26.4906,-282.963	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:82:41,41:41:1461:41:1461:-107.052,0,-107.1	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:59:29,30:29:1044:30:1075:-79.2658,0,-76.514	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.512	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:77:77,0:77:2753:0:0:0,-23.1793,-248.01	0/1:22:18,4:18:644:4:140:-5.81707,0,-51.6679	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/0:92:91,0:91:3227:0:0:0,-27.3937,-290.437	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:157:157,0:157:5576:0:0:0,-47.2617,-501.961	0/1:33:20,13:20:716:13:464:-32.1519,0,-54.8337	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:93:93,0:93:3329:0:0:0,-27.9958,-299.826	0/1:58:38,20:38:1341:20:716:-47.2998,0,-103.528	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:45:27,18:27:968:18:648:-45.1032,0,-73.891	0/0:89:89,0:89:3162:0:0:0,-26.7917,-284.803	0/0:62:62,0:62:2217:0:0:0,-18.6639,-199.793	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:46:18,28:18:648:28:1008:-77.189,0,-44.8045	0/1:52:30,22:30:1056:22:788:-55.5912,0,-79.6946	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:54:25,29:25:896:29:1031:-76.8418,0,-64.7047	0/1:26:8,18:8:288:18:639:-49.8779,0,-18.4406	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852
chr08	13615322	.	T	A,G	150684	PASS	AB=0.678977,0.319129;ABP=296.825,303.077;AC=167,21;AF=0.888298,0.111702;AN=188;AO=6317,348;CIGAR=1X,1X;DP=6668;DPB=6668;DPRA=0,0.785254;EPP=13720.2,758.683;EPPR=9.52472;GTI=6;LEN=1,1;MEANALT=1.30851,2;MQM=59.9318,60;MQMR=60;NS=94;NUMALT=2;ODDS=3.77596;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=226367,12381;QR=108;RO=3;RPL=0,0;RPP=13720.2,758.683;RPPR=9.52472;RPR=6317,348;RUN=1,1;SAF=6317,348;SAP=13720.2,758.683;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8,0:0:0:8,0:288,0:-26.2628,-2.40824,0,-26.2628,-2.40824,-26.2628	1/1:130:0,130,0:0:0:130,0:4676,0:-420.999,-39.1339,0,-420.999,-39.1339,-420.999	1/1:96:0,96,0:0:0:96,0:3448,0:-310.531,-28.8989,0,-310.531,-28.8989,-310.531	1/1:196:0,196,0:0:0:196,0:7002,0:-630.11,-59.0019,0,-630.11,-59.0019,-630.11	1/1:63:0,63,0:0:0:63,0:2264,0:-204.022,-18.9649,0,-204.022,-18.9649,-204.022	1/1:73:0,73,0:0:0:73,0:2609,0:-235.056,-21.9752,0,-235.056,-21.9752,-235.056	1/1:100:0,100,0:0:0:100,0:3596,0:-323.845,-30.103,0,-323.845,-30.103,-323.845	1/1:156:0,156,0:0:0:156,0:5596,0:-503.747,-46.9607,0,-503.747,-46.9607,-503.747	1/1:85:0,83,2:0:0:83,2:2988,72:-268.791,-24.9855,0,-262.916,-18.7508,-262.314	1/1:70:0,70,0:0:0:70,0:2501,0:-225.341,-21.0721,0,-225.341,-21.0721,-225.341	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:30:0,30,0:0:0:30,0:1065,0:-96.1598,-9.0309,0,-96.1598,-9.0309,-96.1598	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/1:20:0,20,0:0:0:20,0:713,0:-64.4503,-6.0206,0,-64.4503,-6.0206,-64.4503	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:21:0,21,0:0:0:21,0:737,0:-66.6424,-6.32163,0,-66.6424,-6.32163,-66.6424	1/1:20:0,19,1:0:0:19,1:665,36:-59.8135,-5.71957,0,-56.8755,-2.42233,-56.5745	1/1:166:0,166,0:0:0:166,0:5922,0:-533.077,-49.971,0,-533.077,-49.971,-533.077	1/1:107:0,107,0:0:0:107,0:3799,0:-342.105,-32.2102,0,-342.105,-32.2102,-342.105	1/1:146:0,146,0:0:0:146,0:5229,0:-470.746,-43.9504,0,-470.746,-43.9504,-470.746	1/1:28:0,28,0:0:0:28,0:996,0:-89.9549,-8.42884,0,-89.9549,-8.42884,-89.9549	1/2:64:1,23,40:1:36:23,40:824,1436:-181.099,-114.199,-110.213,-64.2624,0,-55.1587	1/1:62:0,61,1:0:0:61,1:2196,36:-197.541,-18.3628,0,-194.603,-15.0656,-194.302	1/2:175:0,106,69:0:0:106,69:3785,2476:-510.903,-202.322,-170.413,-308.938,0,-288.167	1/1:162:0,162,0:0:0:162,0:5805,0:-522.56,-48.7669,0,-522.56,-48.7669,-522.56	1/2:7:0,6,1:0:0:6,1:216,36:-20.9217,-3.29724,-1.49106,-17.9843,0,-17.6833	1/1:208:0,208,0:0:0:208,0:7468,0:-672.135,-62.6142,0,-672.135,-62.6142,-672.135	1/1:131:0,129,2:0:0:129,2:4635,72:-416.946,-38.8329,0,-411.072,-32.5982,-410.47	1/2:118:0,77,41:0:0:77,41:2757,1449:-343.195,-118.362,-95.1824,-225.188,0,-212.846	1/2:16:0,7,9:0:0:7,9:252,294:-44.6428,-24.0663,-21.9591,-20.9217,0,-18.2125	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:7:0,6,1:0:0:6,1:216,36:-20.9217,-3.29724,-1.49106,-17.9843,0,-17.6833	1/1:87:0,87,0:0:0:87,0:3128,0:-281.743,-26.1896,0,-281.743,-26.1896,-281.743	1/1:213:0,213,0:0:0:213,0:7629,0:-686.638,-64.1194,0,-686.638,-64.1194,-686.638	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:93:0,77,16:0:0:77,16:2738,564:-269.401,-46.2738,-23.0945,-223.48,0,-218.664	1/2:17:0,8,9:0:0:8,9:288,324:-50.2959,-26.7966,-24.3883,-23.8592,0,-21.1499	1/1:75:0,75,0:0:0:75,0:2653,0:-238.926,-22.5773,0,-238.926,-22.5773,-238.926	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/1:80:0,80,0:0:0:80,0:2865,0:-258.001,-24.0824,0,-258.001,-24.0824,-258.001	1/1:134:0,134,0:0:0:134,0:4772,0:-429.279,-40.338,0,-429.279,-40.338,-429.279	1/2:93:1,71,21:1:36:71,21:2538,733:-263.312,-56.6708,-38.2356,-203.995,0,-200.611	1/1:107:0,107,0:0:0:107,0:3832,0:-345.077,-32.2102,0,-345.077,-32.2102,-345.077	1/1:110:0,110,0:0:0:110,0:3937,0:-354.52,-33.1133,0,-354.52,-33.1133,-354.52	1/1:136:0,136,0:0:0:136,0:4877,0:-439.08,-40.9401,0,-439.08,-40.9401,-439.08	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:76:0,56,20:0:0:56,20:2012,701:-221.534,-57.3911,-40.5334,-164.495,0,-158.475	1/1:54:0,54,0:0:0:54,0:1936,0:-174.516,-16.2556,0,-174.516,-16.2556,-174.516	1/2:20:0,15,5:0:0:15,5:525,176:-57.3911,-14.6799,-10.1644,-43.0626,0,-41.5575	1/2:57:0,49,8:0:0:49,8:1760,288:-167.433,-23.8592,-9.1087,-143.933,0,-141.525	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/1:12:0,12,0:0:0:12,0:432,0:-39.2188,-3.61236,0,-39.2188,-3.61236,-39.2188	1/1:15:0,15,0:0:0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chr08	14834287	.	C	G	147275	PASS	AB=0.49701;ABP=3.12717;AC=167;AF=0.888298;AN=188;AO=6686;CIGAR=1X;DP=7471;DPB=7471;DPRA=0;EPP=14521.5;EPPR=1688.07;GTI=0;LEN=1;MEANALT=1.08511;MQM=47.9762;MQMR=59.9575;NS=94;NUMALT=1;ODDS=8.70968;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238867;QR=27569;RO=776;RPL=6686;RPP=14521.5;RPPR=1688.07;RPR=0;RUN=1;SAF=6686;SAP=14521.5;SAR=0;SRF=776;SRP=1688.07;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,59:0:0:59:2111:-188.926,-17.7608,0	1/1:83:0,83:0:0:83:2968:-265.958,-24.9855,0	1/1:136:0,136:0:0:136:4863:-434.453,-40.9401,0	1/1:187:0,187:0:0:187:6678:-593.71,-56.2926,0	1/1:68:0,68:0:0:68:2414:-215.226,-20.47,0	1/1:61:0,61:0:0:61:2172:-194.137,-18.3628,0	1/1:186:0,186:0:0:186:6646:-590.837,-55.9916,0	1/1:122:0,122:0:0:122:4353:-388.613,-36.7257,0	1/1:135:0,135:0:0:135:4828:-430.631,-40.6391,0	1/1:72:0,72:0:0:72:2580:-229.783,-21.6742,0	1/1:40:0,40:0:0:40:1412:-125.969,-12.0412,0	1/1:77:0,77:0:0:77:2733:-244.395,-23.1793,0	1/1:68:0,68:0:0:68:2431:-216.119,-20.47,0	1/1:32:0,32:0:0:32:1144:-102.29,-9.63296,0	1/1:60:0,59:0:0:59:2107:-186.984,-17.7608,0	1/1:43:0,43:0:0:43:1535:-136.921,-12.9443,0	1/1:44:0,44:0:0:44:1582:-141.432,-13.2453,0	1/1:38:0,38:0:0:38:1351:-121.212,-11.4391,0	1/1:38:0,38:0:0:38:1346:-120.342,-11.4391,0	1/1:147:0,147:0:0:147:5272:-469.009,-44.2514,0	1/1:126:0,126:0:0:126:4483:-398.277,-37.9298,0	1/1:149:0,149:0:0:149:5304:-475.699,-44.8535,0	1/1:90:0,90:0:0:90:3198:-285.69,-27.0927,0	0/1:130:52,77:52:1841:77:2753:-206.342,0,-126.778	1/1:94:0,94:0:0:94:3380:-301.252,-28.2968,0	0/1:226:102,124:102:3620:124:4452:-330.683,0,-257.973	1/1:218:0,218:0:0:218:7784:-693.818,-65.6245,0	0/1:39:23,16:23:820:16:572:-39.7208,0,-62.3817	1/1:190:0,190:0:0:190:6804:-609.074,-57.1957,0	1/1:93:7,86:7:252:86:3072:-250.959,-4.96839,0	0/1:83:44,39:44:1561:39:1404:-100.483,0,-115.794	0/1:8:5,3:5:180:3:108:-7.29192,0,-14.1438	1/1:12:0,12:0:0:12:432:-38.744,-3.61236,0	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	1/1:8:0,8:0:0:8:288:-26.125,-2.40824,0	0/1:9:8,1:8:279:1:36:-0.869497,0,-22.7383	1/1:198:0,198:0:0:198:7063:-631.076,-59.6039,0	1/1:152:5,147:5:180:147:5263:-451.397,-29.2045,0	1/1:66:0,66:0:0:66:2347:-208.025,-19.868,0	1/1:7:0,7:0:0:7:248:-22.5187,-2.10721,0	0/1:93:53,40:53:1868:40:1434:-99.9775,0,-140.401	0/1:29:11,18:11:396:18:644:-49.1701,0,-27.2529	1/1:121:1,120:1:36:120:4282:-378.004,-32.8264,0	1/1:62:0,62:0:0:62:2212:-196.969,-18.6639,0	1/1:56:0,56:0:0:56:2000:-177.711,-16.8577,0	1/1:25:0,25:0:0:25:896:-80.7552,-7.52575,0	1/1:109:0,109:0:0:109:3892:-347.323,-32.8123,0	0/1:155:75,80:75:2677:80:2868:-207.755,0,-194.511	1/1:140:0,140:0:0:140:5015:-447.31,-42.1442,0	1/1:62:0,62:0:0:62:2224:-198.375,-18.6639,0	1/1:218:0,217:0:0:217:7771:-695.304,-65.3235,0	1/1:6:0,6:0:0:6:216:-19.6175,-1.80618,0	0/1:68:31,37:31:1112:37:1328:-98.7206,0,-79.9213	1/1:18:0,18:0:0:18:648:-58.5044,-5.41854,0	0/1:15:8,7:8:279:7:248:-18.0345,0,-20.9321	0/1:81:55,26:55:1972:26:928:-58.8978,0,-153.371	1/1:57:0,57:0:0:57:2018:-179.205,-17.1587,0	1/1:6:0,6:0:0:6:216:-19.7408,-1.80618,0	1/1:18:0,18:0:0:18:648:-58.449,-5.41854,0	1/1:64:0,64:0:0:64:2276:-203.282,-19.2659,0	1/1:70:1,69:1:32:69:2446:-214.916,-17.8728,0	1/1:8:0,8:0:0:8:288:-26.0377,-2.40824,0	1/1:123:0,123:0:0:123:4397:-394.27,-37.0267,0	1/1:164:1,163:1:36:163:5847:-516.071,-45.7706,0	0/1:23:9,14:9:324:14:504:-38.4589,0,-22.5822	1/1:43:0,43:0:0:43:1544:-136.473,-12.9443,0	1/1:138:2,134:2:72:134:4800:-421.261,-34.4618,0	1/1:86:0,85:0:0:85:3034:-269.094,-25.5876,0	1/1:13:0,13:0:0:13:451:-40.6324,-3.91339,0	1/1:58:0,57:0:0:57:2040:-181.639,-17.1587,0	1/1:52:0,52:0:0:52:1872:-167.851,-15.6536,0	0/1:19:10,9:10:352:9:324:-23.5003,0,-26.298	1/1:124:0,124:0:0:124:4428:-394.485,-37.3277,0	0/1:54:24,30:24:851:30:1063:-79.2256,0,-60.6505	1/1:116:0,116:0:0:116:4160:-370.446,-34.9195,0	1/1:88:0,88:0:0:88:3156:-280.762,-26.4906,0	0/1:113:52,61:52:1864:61:2175:-160.648,0,-134.017	1/1:65:3,62:3:108:62:2219:-187.941,-9.49178,0	1/1:14:0,14:0:0:14:495:-44.6454,-4.21442,0	1/1:51:0,51:0:0:51:1824:-162.438,-15.3525,0	0/1:48:26,22:26:897:22:765:-54.2099,0,-66.5919	1/1:181:0,180:0:0:180:6432:-571.606,-54.1854,0	1/1:74:0,74:0:0:74:2655:-236.013,-22.2762,0	1/1:44:0,44:0:0:44:1562:-139.183,-13.2453,0	1/1:53:0,52:0:0:52:1860:-165.588,-15.6536,0	1/1:123:0,123:0:0:123:4356:-388.097,-37.0267,0	1/1:31:0,31:0:0:31:1112:-98.9022,-9.33193,0	0/1:125:60,65:60:2140:65:2332:-170.735,0,-155.239	0/1:44:19,25:19:676:25:896:-66.8112,0,-47.9227	1/1:16:0,16:0:0:16:572:-50.6937,-4.81648,0	0/1:66:35,31:35:1230:31:1099:-78.3544,0,-91.1321	0/1:77:54,23:54:1914:23:824:-50.6664,0,-149.357	1/1:62:0,62:0:0:62:2209:-196.624,-18.6639,0	1/1:107:0,107:0:0:107:3809:-339.048,-32.2102,0
chr08	15997533	.	GGC	GGT,AGT	247337	PASS	AB=0.507535,0.490054;ABP=3.82837,4.4357;AC=162,22;AF=0.880435,0.119565;AN=184;AO=7920,823;CIGAR=2M1X,1X1M1X;DP=8787;DPB=8789;DPRA=0,0.92645;EPP=16924.2,1764.17;EPPR=25.3454;GTI=1;LEN=1,3;MEANALT=1.59783,2.24138;MQM=59.961,59.6488;MQMR=60;NS=92;NUMALT=2;ODDS=2.11783;PAIRED=0,0;PAIREDR=0;PAO=0,6;PQA=0,212;PQR=0;PRO=0;QA=281205,28915;QR=484;RO=14;RPL=3794,327;RPP=33.2311,78.368;RPPR=5.49198;RPR=4126,496;RUN=1,1;SAF=3762,328;SAP=46.0055,76.595;SAR=4158,495;SRF=4;SRP=8.59409;SRR=10;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25,0:0:0:25,0:871,0:-78.6891,-7.52575,0,-78.6891,-7.52575,-78.6891	1/1:98:0,98,0:0:0:98,0:3480,0:-313.392,-29.5009,0,-313.392,-29.5009,-313.392	1/1:73:0,73,0:0:0:73,0:2620,0:-236.047,-21.9752,0,-236.047,-21.9752,-236.047	1/1:184:0,184,0:0:0:184,0:6553,0:-589.855,-55.3895,0,-589.855,-55.3895,-589.855	1/1:58:1,57,0:1:36:57,0:2004,0:-177.022,-13.8615,0,-177.323,-17.1587,-180.26	1/1:50:0,49,0:0:0:49,0:1736,0:-156.249,-14.7505,0,-156.249,-14.7505,-156.249	1/1:124:0,122,0:0:0:122,0:4356,0:-391.895,-36.7257,0,-391.895,-36.7257,-391.895	1/1:119:0,119,0:0:0:119,0:4218,0:-379.803,-35.8226,0,-379.803,-35.8226,-379.803	1/1:113:0,112,1:0:0:112,1:3993,36:-359.2,-33.7154,0,-356.262,-30.4181,-355.961	1/1:111:0,111,0:0:0:111,0:3953,0:-355.961,-33.4143,0,-355.961,-33.4143,-355.961	1/1:72:1,71,0:1:34:71,0:2528,0:-224.373,-18.2752,0,-224.674,-21.3731,-227.432	1/1:151:0,151,0:0:0:151,0:5364,0:-482.887,-45.4555,0,-482.887,-45.4555,-482.887	1/1:111:0,109,0:0:0:109,0:3862,0:-347.46,-32.8123,0,-347.46,-32.8123,-347.46	1/1:95:0,95,0:0:0:95,0:3344,0:-301.132,-28.5979,0,-301.132,-28.5979,-301.132	1/1:107:0,107,0:0:0:107,0:3784,0:-340.76,-32.2102,0,-340.76,-32.2102,-340.76	1/1:101:0,101,0:0:0:101,0:3567,0:-321.237,-30.404,0,-321.237,-30.404,-321.237	1/1:76:0,75,0:0:0:75,0:2679,0:-241.074,-22.5773,0,-241.074,-22.5773,-241.074	1/1:75:0,75,0:0:0:75,0:2642,0:-238.025,-22.5773,0,-238.025,-22.5773,-238.025	1/1:49:0,48,1:0:0:48,1:1721,36:-154.816,-14.4494,0,-151.878,-11.1522,-151.577	1/1:101:0,101,0:0:0:101,0:3581,0:-322.498,-30.404,0,-322.498,-30.404,-322.498	1/1:148:0,148,0:0:0:148,0:5293,0:-476.505,-44.5524,0,-476.505,-44.5524,-476.505	1/1:63:0,63,0:0:0:63,0:2235,0:-201.414,-18.9649,0,-201.414,-18.9649,-201.414	1/1:56:0,56,0:0:0:56,0:1978,0:-178.293,-16.8577,0,-178.293,-16.8577,-178.293	1/2:98:0,45,53:0:0:45,53:1585,1878:-282.34,-153.314,-139.768,-129.378,0,-113.424	1/1:66:2,64,0:2:70:64,0:2256,0:-196.605,-13.2207,0,-197.207,-19.2659,-202.902	1/2:221:0,105,115:0:0:105,115:3704,4038:-630.386,-328.781,-297.173,-301.745,0,-267.127	1/1:270:0,268,0:0:0:268,0:9512,0:-855.726,-80.676,0,-855.726,-80.676,-855.726	1/2:49:0,24,25:0:0:24,25:832,892:-140.591,-72.9725,-65.7478,-67.9693,0,-60.4435	1/1:224:0,222,0:0:0:222,0:7863,0:-707.188,-66.8287,0,-707.188,-66.8287,-707.188	1/1:105:0,100,4:0:0:100,4:3554,144:-319.706,-30.103,0,-307.957,-18.3371,-306.752	1/2:78:0,36,42:0:0:36,42:1280,1462:-223.181,-118.867,-108.03,-104.306,0,-91.6632	1/2:4:0,1,3:0:0:1,3:36,106:-11.9251,-8.98601,-8.68498,-3.29724,0,-2.39415	1/1:7:0,7,0:0:0:7,0:233,0:-21.2943,-2.10721,0,-21.2943,-2.10721,-21.2943	1/2:9:0,5,4:0:0:5,4:180,133:-25.7881,-11.0856,-9.58046,-15.0469,0,-13.8428	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/2:5:0,3,2:0:0:3,2:108,70:-14.8635,-6.04527,-5.14218,-9.17208,0,-8.57002	1/1:284:0,284,0:0:0:284,0:10066,0:-905.882,-85.4925,0,-905.882,-85.4925,-905.882	1/1:63:0,63,0:0:0:63,0:2228,0:-200.783,-18.9649,0,-200.783,-18.9649,-200.783	1/1:90:0,90,0:0:0:90,0:3232,0:-291.101,-27.0927,0,-291.101,-27.0927,-291.101	.:.:.:.:.:.:.:.	1/2:91:0,62,29:0:0:62,29:2189,1026:-262.179,-83.9217,-65.2578,-178.611,0,-169.881	1/2:47:0,24,23:0:0:24,23:864,814:-137.13,-66.6289,-59.4042,-70.8578,0,-63.9342	1/1:100:0,99,0:0:0:99,0:3503,0:-315.249,-29.802,0,-315.249,-29.802,-315.249	1/1:138:2,136,0:2:56:136,0:4872,0:-433.314,-36.2238,0,-433.916,-40.9401,-438.351	1/1:100:0,100,0:0:0:100,0:3554,0:-320.069,-30.103,0,-320.069,-30.103,-320.069	1/1:79:4,75,0:4:144:75,0:2668,0:-227.053,-10.4678,0,-228.257,-22.5773,-240.007	1/1:94:0,94,0:0:0:94,0:3329,0:-299.829,-28.2968,0,-299.829,-28.2968,-299.829	1/2:117:0,50,67:0:0:50,67:1745,2357:-333.674,-191.746,-176.694,-141.919,0,-121.75	1/1:80:0,80,0:0:0:80,0:2848,0:-256.559,-24.0824,0,-256.559,-24.0824,-256.559	1/1:121:1,120,0:1:36:120,0:4284,0:-382.141,-32.8264,0,-382.442,-36.1236,-385.379	1/1:80:0,80,0:0:0:80,0:2852,0:-256.911,-24.0824,0,-256.911,-24.0824,-256.911	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:72:0,54,18:0:0:54,18:1920,643:-209.237,-52.7755,-36.5199,-156.818,0,-151.4	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/2:11:0,2,9:0:0:2,9:68,298:-29.9481,-24.4307,-23.8286,-5.85565,0,-3.14638	1/2:95:0,41,54:0:0:41,54:1444,1888:-271.502,-153.939,-141.597,-117.914,0,-101.658	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	.:.:.:.:.:.:.:.	1/1:13:0,13,0:0:0:13,0:452,0:-41.0097,-3.91339,0,-41.0097,-3.91339,-41.0097	1/1:93:0,92,0:0:0:92,0:3276,0:-294.725,-27.6948,0,-294.725,-27.6948,-294.725	1/1:135:0,134,0:0:0:134,0:4796,0:-431.436,-40.338,0,-431.436,-40.338,-431.436	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:178:0,178,0:0:0:178,0:6272,0:-564.58,-53.5833,0,-564.58,-53.5833,-564.58	1/1:167:0,167,0:0:0:167,0:5908,0:-531.835,-50.272,0,-531.835,-50.272,-531.835	1/2:59:0,31,28:0:0:31,28:1112,992:-171.798,-81.095,-71.7631,-91.0594,0,-82.6306	1/1:54:0,54,0:0:0:54,0:1903,0:-171.541,-16.2556,0,-171.541,-16.2556,-171.541	1/1:122:0,121,1:0:0:121,1:4311,28:-387.887,-36.4246,0,-385.669,-33.9259,-385.368	1/1:127:0,126,0:0:0:126,0:4442,0:-399.595,-37.9298,0,-399.595,-37.9298,-399.595	1/1:52:0,52,0:0:0:52,0:1855,0:-167.229,-15.6536,0,-167.229,-15.6536,-167.229	1/1:67:0,67,0:0:0:67,0:2355,0:-212.207,-20.169,0,-212.207,-20.169,-212.207	1/1:79:0,79,0:0:0:79,0:2824,0:-254.399,-23.7814,0,-254.399,-23.7814,-254.399	1/2:22:0,9,13:0:0:9,13:324,468:-64.983,-38.5463,-35.837,-26.7966,0,-22.8832	1/1:103:0,101,0:0:0:101,0:3578,0:-321.861,-30.404,0,-321.861,-30.404,-321.861	1/2:108:0,59,49:0:0:59,49:2120,1707:-312.117,-139.163,-121.402,-173.308,0,-158.557	1/1:201:0,199,1:0:0:199,1:7075,36:-636.524,-59.905,0,-633.586,-56.8876,-633.285	1/1:137:0,137,0:0:0:137,0:4869,0:-438.365,-41.2411,0,-438.365,-41.2411,-438.365	1/2:68:0,39,29:0:0:39,29:1380,1040:-197.041,-84.6395,-72.8993,-112.41,0,-103.68	1/1:130:0,129,1:0:0:129,1:4553,36:-409.579,-38.8329,0,-406.642,-35.5356,-406.341	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:104:1,103,0:1:36:103,0:3666,0:-326.543,-27.7088,0,-326.844,-31.0061,-329.782	1/2:91:0,49,42:0:0:49,42:1752,1458:-261.613,-118.753,-104.003,-143.212,0,-130.569	1/1:183:0,182,0:0:0:182,0:6415,0:-577.162,-54.7875,0,-577.162,-54.7875,-577.162	1/1:122:0,120,0:0:0:120,0:4255,0:-382.773,-36.1236,0,-382.773,-36.1236,-382.773	1/1:93:0,93,0:0:0:93,0:3316,0:-298.659,-27.9958,0,-298.659,-27.9958,-298.659	1/1:106:0,106,0:0:0:106,0:3764,0:-338.96,-31.9092,0,-338.96,-31.9092,-338.96	1/1:248:0,245,1:0:0:245,1:8720,36:-784.51,-73.7524,0,-781.572,-70.7766,-781.271	1/1:46:1,45,0:1:36:45,0:1620,0:-142.49,-10.2491,0,-142.791,-13.5464,-145.729	1/2:120:0,69,50:0:0:69,50:2426,1757:-340.473,-143.002,-122.231,-197.463,0,-182.411	1/2:108:0,57,50:0:0:57,50:2015,1763:-307.672,-143.56,-126.402,-164.143,0,-149.092	1/1:50:0,49,0:0:0:49,0:1739,0:-156.521,-14.7505,0,-156.521,-14.7505,-156.521	1/2:87:0,44,43:0:0:44,43:1567,1480:-248.227,-120.501,-107.256,-128.076,0,-115.131	1/2:99:0,33,65:0:0:33,65:1184,2293:-283.398,-186.82,-176.886,-96.6927,0,-77.1257	1/1:161:1,159,0:1:36:159,0:5659,0:-505.672,-44.9264,0,-505.973,-47.8638,-508.911	1/1:209:0,208,0:0:0:208,0:7415,0:-667.038,-62.6142,0,-667.038,-62.6142,-667.038
chr08	16347604	.	G	T	18717.2	PASS	AB=0.509566;ABP=4.71363;AC=23;AF=0.12234;AN=188;AO=1109;CIGAR=1X;DP=9190;DPB=9190;DPRA=1.15921;EPP=2385.19;EPPR=17379.5;GTI=1;LEN=1;MEANALT=1;MQM=59.8197;MQMR=59.952;NS=94;NUMALT=1;ODDS=3.99844;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39737;QR=288838;RO=8078;RPL=1109;RPP=2411.17;RPPR=17388.2;RPR=0;RUN=1;SAF=3;SAP=2385.19;SAR=1106;SRF=1;SRP=17535.5;SRR=8077;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/0:173:173,0:173:6180:0:0:0,-52.0782,-556.3	0/0:155:155,0:155:5555:0:0:0,-46.6596,-500.028	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.867	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/0:40:40,0:40:1414:0:0:0,-12.0412,-127.556	0/0:260:258,0:258:9209:0:0:0,-77.6657,-827.722	0/0:69:69,0:69:2447:0:0:0,-20.7711,-220.485	0/0:104:104,0:104:3722:0:0:0,-31.3071,-335.088	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:59:59,0:59:2120:0:0:0,-17.7608,-190.911	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.966	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.688	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.735	0/0:199:197,2:197:7051:2:72:0,-53.0682,-627.814	0/0:152:152,0:152:5435:0:0:0,-45.7566,-489.269	0/0:67:66,0:66:2372:0:0:0,-19.868,-213.378	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.291	0/1:159:91,68:91:3255:68:2423:-170.449,0,-245.3	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:282:146,136:146:5228:136:4864:-353.018,0,-385.767	0/0:224:224,0:224:8030:0:0:0,-67.4307,-722.71	0/1:50:26,24:26:936:24:864:-63.0311,0,-69.508	0/0:204:204,0:204:7286:0:0:0,-61.4101,-655.792	0/0:90:88,2:88:3140:2:72:0,-20.256,-275.984	0/1:124:56,68:56:1987:68:2440:-182.518,0,-141.773	0/1:11:6,5:6:216:5:180:-13.2373,0,-16.4792	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:13:8,5:8:279:5:180:-12.6387,0,-21.5341	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:182:182,0:182:6484:0:0:0,-54.7875,-582.364	0/0:141:140,1:140:5016:1:36:0,-38.847,-447.988	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:140:69,71:69:2468:71:2556:-188.136,0,-180.23	0/1:40:14,26:14:504:26:932:-72.1577,0,-33.6569	0/0:149:149,0:149:5325:0:0:0,-44.8535,-479.379	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:47:46,1:46:1627:1:36:0,-10.5501,-143.12	0/0:118:118,0:118:4207:0:0:0,-35.5215,-378.766	0/1:176:78,98:78:2800:98:3524:-264.021,0,-199.258	0/0:118:118,0:118:4211:0:0:0,-35.5215,-379.142	0/0:168:168,0:168:6012:0:0:0,-50.573,-541.185	0/0:151:151,0:151:5415:0:0:0,-45.4555,-487.478	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:121:55,66:55:1980:66:2338:-174.252,0,-142.05	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:21:14,7:14:495:7:252:-16.7073,0,-38.5614	0/1:131:62,69:62:2220:69:2470:-183.11,0,-160.63	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:96:96,0:96:3417:0:0:0,-28.8989,-307.744	0/0:92:90,2:90:3232:2:72:0,-20.858,-284.264	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:126:126,0:126:4515:0:0:0,-37.9298,-406.517	0/0:176:171,5:171:6117:5:180:0,-36.4292,-534.075	0/1:127:77,50:77:2760:50:1792:-123.173,0,-210.375	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.685	0/0:143:143,0:143:5110:0:0:0,-43.0473,-459.77	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.622	0/0:51:51,0:51:1827:0:0:0,-15.3525,-164.71	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.623	0/1:30:15,15:15:540:15:540:-39.9056,0,-39.9056	0/0:60:60,0:60:2130:0:0:0,-18.0618,-191.957	0/1:97:52,45:52:1859:45:1616:-116.53,0,-138.389	0/0:276:276,0:276:9848:0:0:0,-83.0843,-886.262	0/0:135:135,0:135:4823:0:0:0,-40.639,-434.225	0/1:174:57,117:57:2031:117:4181:-324.092,0,-130.683	0/0:197:194,3:194:6935:3:108:0,-49.2277,-613.515	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:150:150,0:150:5349:0:0:0,-45.1545,-481.543	0/1:111:62,49:62:2215:49:1764:-125.585,0,-166.2	0/0:253:252,1:252:9036:1:36:0,-72.5623,-809.617	0/0:82:82,0:82:2912:0:0:0,-24.6845,-262.31	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:100:100,0:100:3569:0:0:0,-30.103,-321.413	0/0:133:133,0:133:4737:0:0:0,-40.037,-426.466	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:62:31,31:31:1086:31:1116:-82.0863,0,-79.3837	0/1:81:37,44:37:1328:44:1576:-117.748,0,-95.4388	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:92:57,35:57:2026:35:1260:-86.0107,0,-154.917	0/1:77:23,54:23:824:54:1933:-151.066,0,-51.304	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.828	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.325
chr08	16670869	.	C	T	6508.99	PASS	AB=0.493687;ABP=3.28448;AC=23;AF=0.12234;AN=188;AO=396;CIGAR=1X;DP=3732;DPB=3732;DPRA=0.973077;EPP=837.053;EPPR=7221;GTI=3;LEN=1;MEANALT=1;MQM=59.9318;MQMR=59.7731;NS=94;NUMALT=1;ODDS=0.562333;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=14146;QR=118860;RO=3332;RPL=3;RPP=837.053;RPPR=7238.36;RPR=393;RUN=1;SAF=396;SAP=862.913;SAR=0;SRF=3330;SRP=7221;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:55:54,0:54:1908:0:0:0,-16.2556,-171.585	0/0:27:27,0:27:952:0:0:0,-8.12781,-85.9919	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.384	0/0:49:49,0:49:1740:0:0:0,-14.7505,-156.87	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.888	0/0:61:61,0:61:2159:0:0:0,-18.3628,-194.539	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.791	0/0:87:87,0:87:3100:0:0:0,-26.1896,-278.312	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.179	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.038	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.623	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:33:33,0:33:1175:0:0:0,-9.93399,-105.623	0/0:67:66,0:66:2336:0:0:0,-19.868,-210.286	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.768	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1841	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:24:13,11:13:460:11:392:-28.3953,0,-34.5107	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:92:36,56:36:1292:56:1998:-152.399,0,-88.889	0/0:49:49,0:49:1744:0:0:0,-14.7505,-157.217	0/1:48:23,25:23:820:25:888:-65.7896,0,-59.6731	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.141	0/1:37:33,4:33:1184:4:140:-1.80647,0,-95.721	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.7294	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/1:7:2,5:2:72:5:180:-14.4449,0,-3.566	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:158:158,0:158:5634:0:0:0,-47.5627,-506.746	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.353	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.914	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:42:25,17:25:896:17:605:-42.1373,0,-68.3171	0/1:39:20,19:20:720:19:680:-49.789,0,-53.384	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5297	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.75	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.627	0/0:17:16,0:16:560:0:0:0,-4.81648,-50.3701	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.427	0/1:32:17,15:17:608:15:536:-38.9419,0,-45.4187	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.058	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.461	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:30:19,11:19:672:11:392:-26.5327,0,-51.7759	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.5318	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.286	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.513	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.954	0/0:63:62,1:62:2228:1:36:0,-15.3666,-197.183	0/1:46:18,28:18:640:28:1004:-76.8285,0,-44.0819	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.8341	0/0:37:36,1:36:1280:1:36:0,-7.53983,-111.905	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8816	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1436	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:95:94,1:94:3342:1:36:0,-25.0006,-297.399	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0226	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.77	0/0:36:36,0:36:1272:0:0:0,-10.8371,-114.781	0/1:37:19,18:19:684:18:640:-46.7912,0,-50.7431	0/0:45:45,0:45:1620:0:0:0,-13.5463,-145.924	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.971	0/1:24:11,13:11:392:13:460:-34.5107,0,-28.3837	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.255	0/0:111:111,0:111:3937:0:0:0,-33.4143,-354.523	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.372	0/0:115:115,0:115:4120:0:0:0,-34.6184,-370.967	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:62:38,24:38:1351:24:856:-58.6972,0,-103.226	0/1:50:23,27:23:828:27:968:-72.3859,0,-59.7844	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.528	0/1:78:42,36:42:1496:36:1279:-91.9259,0,-111.45	0/1:59:19,40:19:675:40:1436:-111.776,0,-43.3162	0/0:24:23,1:23:807:1:36:0,-3.62689,-69.349	0/0:99:98,0:98:3495:0:0:0,-29.5009,-314.38
chr08	16670899	.	C	T	70903.6	PASS	AB=0.311058;ABP=392.778;AC=164;AF=0.87234;AN=188;AO=3290;CIGAR=1X;DP=4171;DPB=4171;DPRA=14.9391;EPP=7112.45;EPPR=1903.06;GTI=9;LEN=1;MEANALT=1.02151;MQM=59.7748;MQMR=59.8373;NS=94;NUMALT=1;ODDS=0.489321;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116435;QR=31027;RO=879;RPL=3287;RPP=7121.12;RPPR=17.6572;RPR=3;RUN=1;SAF=3283;SAP=7086.48;SAR=7;SRF=400;SRP=18.428;SRR=479;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:57:0,57:0:0:57:2002:-180.397,-17.1587,0	1/1:28:0,28:0:0:28:991:-89.5025,-8.42884,0	1/1:42:0,42:0:0:42:1482:-133.673,-12.6433,0	1/1:27:1,26:1:36:26:928:-80.24,-4.52954,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:33:1,32:1:36:32:1135:-98.8571,-6.33572,0	1/1:48:0,48:0:0:48:1674:-150.942,-14.4494,0	1/1:20:0,20:0:0:20:711:-64.3156,-6.0206,0	1/1:34:0,34:0:0:34:1204:-108.666,-10.235,0	1/1:63:0,63:0:0:63:2268:-204.375,-18.9649,0	1/1:59:0,59:0:0:59:2087:-188.092,-17.7608,0	1/1:49:0,49:0:0:49:1743:-157.13,-14.7505,0	1/1:84:0,84:0:0:84:2910:-261.757,-25.2865,0	1/1:63:0,63:0:0:63:2247:-202.491,-18.9649,0	1/1:52:0,52:0:0:52:1828:-164.794,-15.6536,0	1/1:110:0,110:0:0:110:3921:-351.979,-33.1133,0	1/1:50:1,49:1:36:49:1760:-155.086,-11.4532,0	1/1:33:0,33:0:0:33:1168:-105.285,-9.93399,0	1/1:65:0,65:0:0:65:2307:-207.887,-19.567,0	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	1/1:5:0,5:0:0:5:180:-16.5497,-1.50515,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:34:22,12:22:771:12:424:-28.2614,0,-59.4753	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	0/1:141:105,36:105:3720:36:1288:-73.7784,0,-292.555	1/1:48:0,48:0:0:48:1683:-151.701,-14.4494,0	0/1:59:36,23:36:1287:23:816:-56.0009,0,-98.3023	1/1:59:0,59:0:0:59:2073:-186.801,-17.7608,0	0/1:38:4,34:4:144:34:1220:-98.6584,0,-1.87448	0/1:43:33,10:33:1184:10:356:-19.4253,0,-93.924	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:7:5,2:5:180:2:66:-3.49902,0,-14.4449	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:160:0,159:0:0:159:5571:-501.297,-47.8638,0	1/1:35:0,35:0:0:35:1224:-110.461,-10.5361,0	1/1:49:0,49:0:0:49:1742:-157.062,-14.7505,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:72:48,24:48:1693:24:845:-54.6929,0,-130.975	0/1:60:40,20:40:1398:20:720:-47.0624,0,-108.051	1/1:16:0,16:0:0:16:563:-50.9541,-4.81648,0	1/1:55:0,55:0:0:55:1957:-176.402,-16.5567,0	1/1:77:0,77:0:0:77:2729:-245.842,-23.1793,0	1/1:17:0,17:0:0:17:604:-54.6598,-5.11751,0	1/1:31:0,31:0:0:31:1094:-98.7683,-9.33193,0	0/1:51:35,16:35:1243:16:576:-36.8221,0,-96.819	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:65:0,65:0:0:65:2297:-206.99,-19.567,0	1/1:37:0,37:0:0:37:1316:-118.741,-11.1381,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:49:32,17:32:1140:17:603:-39.849,0,-88.1272	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:46:32,14:32:1110:14:495:-31.0357,0,-86.3555	1/1:11:0,11:0:0:11:377:-34.2579,-3.31133,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:203:-18.5534,-1.80618,0	1/1:17:0,17:0:0:17:612:-55.4088,-5.11751,0	1/1:79:2,77:2:72:77:2711:-237.389,-16.9446,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:28:0,28:0:0:28:991:-89.5022,-8.42884,0	1/1:68:3,65:3:108:65:2291:-196.336,-10.3949,0	0/1:55:39,16:39:1388:16:568:-34.8952,0,-108.662	1/1:19:0,19:0:0:19:675:-60.9877,-5.71957,0	1/1:36:1,35:1:32:35:1232:-107.982,-7.63777,0	1/1:23:0,23:0:0:23:828:-74.8418,-6.92369,0	1/1:30:0,30:0:0:30:1068:-96.4228,-9.0309,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:94:0,94:0:0:94:3345:-301.263,-28.2968,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	0/1:43:30,13:30:1047:13:468:-29.5071,0,-81.5949	1/1:43:0,43:0:0:43:1515:-136.641,-12.9443,0	1/1:32:0,32:0:0:32:1143:-103.176,-9.63296,0	0/1:66:47,19:47:1670:19:675:-41.207,0,-130.71	1/1:45:0,45:0:0:45:1596:-143.764,-13.5464,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:38:0,38:0:0:38:1345:-121.346,-11.4391,0	0/1:60:48,12:48:1660:12:412:-19.3432,0,-131.601	1/1:55:0,55:0:0:55:1949:-175.667,-16.5567,0	1/1:108:0,108:0:0:108:3832:-345.076,-32.5112,0	1/1:51:0,50:0:0:50:1712:-153.997,-15.0515,0	1/1:69:0,69:0:0:69:2444:-220.214,-20.7711,0	1/1:110:0,110:0:0:110:3854:-347.051,-33.1133,0	1/1:31:0,31:0:0:31:1107:-99.9402,-9.33193,0	0/1:94:57,37:57:2013:37:1324:-91.1653,0,-153.145	0/1:78:56,22:56:1982:22:772:-46.3176,0,-155.173	1/1:44:0,44:0:0:44:1563:-140.939,-13.2453,0	0/1:128:88,40:88:3093:40:1411:-88.7528,0,-240.036	0/1:122:103,19:103:3628:19:684:-25.1647,0,-289.997	1/1:24:0,24:0:0:24:848:-76.6369,-7.22472,0	1/1:99:1,98:1:36:98:3475:-309.357,-26.2037,0
chr08	16696433	.	C	T	14404	PASS	AB=0.5;ABP=3.0103;AC=20;AF=0.106383;AN=188;AO=914;CIGAR=1X;DP=8144;DPB=8144;DPRA=1.24375;EPP=1987.74;EPPR=15694.1;GTI=0;LEN=1;MEANALT=1.03125;MQM=45.186;MQMR=45.536;NS=94;NUMALT=1;ODDS=3.33287;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32576;QR=257769;RO=7226;RPL=914;RPP=1987.74;RPPR=15694.1;RPR=0;RUN=1;SAF=0;SAP=1987.74;SAR=914;SRF=0;SRP=15694.1;SRR=7226;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2302:0:0:0,-19.5669,-203.048	0/0:61:61,0:61:2176:0:0:0,-18.3628,-193.308	0/0:150:150,0:150:5327:0:0:0,-45.1545,-471.683	0/0:255:251,4:251:8928:4:127:0,-65.2417,-782.006	0/0:41:40,1:40:1436:1:36:0,-9.09607,-123.456	0/0:60:60,0:60:2110:0:0:0,-18.0618,-186.842	0/0:101:101,0:101:3600:0:0:0,-30.404,-320.583	0/0:148:146,2:146:5213:2:72:0,-38.5011,-454.977	0/0:133:133,0:133:4722:0:0:0,-40.037,-418.368	0/0:83:82,1:82:2917:1:36:0,-21.6865,-256.131	0/0:66:66,0:66:2360:0:0:0,-19.868,-209.804	0/0:128:128,0:128:4573:0:0:0,-38.5318,-404.96	0/0:104:103,0:103:3696:0:0:0,-31.0061,-327.128	0/0:81:81,0:81:2889:0:0:0,-24.3834,-254.517	0/0:78:78,0:78:2789:0:0:0,-23.4803,-248.803	0/0:53:53,0:53:1899:0:0:0,-15.9546,-167.277	0/0:39:39,0:39:1400:0:0:0,-11.7402,-124.154	0/0:33:33,0:33:1184:0:0:0,-9.93399,-105.399	0/0:35:35,0:35:1237:0:0:0,-10.536,-109.122	0/0:135:133,1:133:4745:1:36:0,-37.0682,-417.176	0/0:131:131,0:131:4666:0:0:0,-39.4349,-410.635	0/0:70:70,0:70:2516:0:0:0,-21.0721,-221.088	0/0:101:101,0:101:3612:0:0:0,-30.404,-321.736	0/1:65:32,33:32:1148:33:1169:-84.1093,0,-82.644	0/0:117:117,0:117:4169:0:0:0,-35.2205,-369.361	0/1:202:123,79:123:4358:79:2829:-189.316,0,-325.775	0/0:283:283,0:283:10136:0:0:0,-85.1915,-893.64	0/1:50:34,16:34:1201:16:568:-35.4578,0,-91.361	0/0:179:177,2:177:6321:2:72:0,-47.4198,-553.722	0/0:79:78,1:78:2773:1:36:0,-20.2329,-240.34	0/1:109:61,48:61:2173:48:1728:-120.487,0,-160.593	0/1:20:6,14:6:216:14:489:-36.8338,0,-13.5055	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.0978	0/0:6:6,0:6:212:0:0:0,-1.80618,-17.8788	0/0:11:11,0:11:392:0:0:0,-3.31133,-34.9682	0/1:13:4,9:4:144:9:324:-25.2673,0,-9.25349	0/0:186:186,0:186:6623:0:0:0,-55.9916,-584.347	0/0:80:78,2:78:2773:2:72:0,-17.3402,-237.9	0/0:58:58,0:58:2080:0:0:0,-17.4597,-185.089	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.05454	0/1:140:72,68:72:2558:68:2436:-173.748,0,-183.377	0/1:35:16,19:16:572:19:684:-50.4984,0,-40.444	0/0:72:72,0:72:2588:0:0:0,-21.6742,-228.235	0/0:68:68,0:68:2448:0:0:0,-20.47,-217.566	0/0:53:53,0:53:1889:0:0:0,-15.9546,-166.794	0/0:106:106,0:106:3793:0:0:0,-31.9092,-335.431	0/0:63:62,1:62:2224:1:36:0,-15.7187,-194.297	0/1:130:46,84:46:1618:84:2948:-223.732,0,-104.297	0/0:76:76,0:76:2702:0:0:0,-22.8783,-239.452	0/0:84:84,0:84:3020:0:0:0,-25.2865,-268.505	0/0:148:148,0:148:5308:0:0:0,-44.5524,-471.015	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.8616	0/1:107:54,53:54:1913:53:1904:-135.887,0,-136.817	0/0:59:59,0:59:2116:0:0:0,-17.7608,-187.944	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.55862	0/1:154:81,73:81:2870:73:2566:-180.126,0,-206.999	0/0:60:60,0:60:2141:0:0:0,-18.0618,-189.69	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.9917	0/0:26:26,0:26:913:0:0:0,-7.82678,-81.2322	0/0:137:137,0:137:4901:0:0:0,-41.2411,-430.062	0/0:105:104,1:104:3690:1:36:0,-28.0413,-324.329	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.458	0/0:117:117,0:117:4158:0:0:0,-35.2205,-366.299	0/0:124:121,3:121:4272:3:108:0,-27.3406,-370	0/1:74:34,40:34:1220:40:1417:-102.635,0,-84.5724	0/0:82:82,0:82:2894:0:0:0,-24.6845,-258.264	0/0:137:137,0:137:4871:0:0:0,-41.2411,-433.638	0/0:161:161,0:161:5720:0:0:0,-48.4658,-507.62	0/0:39:39,0:39:1396:0:0:0,-11.7402,-124.017	0/0:91:91,0:91:3256:0:0:0,-27.3937,-286.921	0/0:51:51,0:51:1817:0:0:0,-15.3525,-160.83	0/1:8:5,3:5:176:3:108:-7.57883,0,-13.661	0/0:138:138,0:138:4921:0:0:0,-41.5421,-435.394	0/1:112:68,44:68:2424:44:1561:-105.041,0,-180.375	0/0:126:126,0:126:4493:0:0:0,-37.9298,-398.524	0/0:150:150,0:150:5339:0:0:0,-45.1545,-475.945	0/1:116:64,52:64:2281:52:1849:-128.302,0,-166.648	0/0:106:104,2:104:3721:2:65:0,-26.1334,-323.81	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.9917	0/0:66:66,0:66:2368:0:0:0,-19.868,-209.607	0/1:81:34,47:34:1220:47:1692:-125.664,0,-83.1624	0/0:154:154,0:154:5489:0:0:0,-46.3586,-488.11	0/0:60:60,0:60:2152:0:0:0,-18.0618,-191.504	0/0:91:89,0:89:3196:0:0:0,-26.7917,-283.749	0/0:44:44,0:44:1576:0:0:0,-13.2453,-139.509	0/0:108:108,0:108:3861:0:0:0,-32.5112,-341.783	0/0:21:21,0:21:752:0:0:0,-6.32163,-66.0356	0/1:72:28,44:28:1000:44:1584:-119.218,0,-66.7909	0/1:91:49,42:49:1744:42:1512:-107.19,0,-127.661	0/0:44:44,0:44:1584:0:0:0,-13.2453,-138.685	0/1:111:54,57:54:1936:57:2040:-146.391,0,-137.751	0/1:96:28,68:28:1000:68:2436:-188.033,0,-59.8372	0/0:84:84,0:84:3016:0:0:0,-25.2865,-268.803	0/0:98:98,0:98:3512:0:0:0,-29.5009,-312.493
chr08	16696436	.	C	T	159346	PASS	AB=0.508693;ABP=4.18068;AC=168;AF=0.893617;AN=188;AO=7313;CIGAR=1X;DP=8206;DPB=8206;DPRA=0;EPP=15883;EPPR=1939.96;GTI=0;LEN=1;MEANALT=1.01064;MQM=45.4823;MQMR=45.4103;NS=94;NUMALT=1;ODDS=4.68171;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261517;QR=31764;RO=892;RPL=7313;RPP=15883;RPPR=1939.96;RPR=0;RUN=1;SAF=0;SAP=15883;SAR=7313;SRF=0;SRP=1939.96;SRR=892;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:66:0,66:0:0:66:2368:-208.297,-19.868,0	1/1:61:0,61:0:0:61:2192:-195.049,-18.3628,0	1/1:151:0,151:0:0:151:5375:-477.003,-45.4555,0	1/1:261:2,258:2:72:258:9235:-812.451,-71.8475,0	1/1:41:0,41:0:0:41:1470:-129.513,-12.3422,0	1/1:60:0,60:0:0:60:2152:-190.043,-18.0618,0	1/1:104:0,104:0:0:104:3700:-329.177,-31.3071,0	1/1:147:1,146:1:36:146:5220:-457.93,-41.1278,0	1/1:134:0,134:0:0:134:4796:-424.633,-40.338,0	1/1:81:0,81:0:0:81:2893:-257.032,-24.3834,0	1/1:65:0,65:0:0:65:2332:-207.107,-19.567,0	1/1:131:0,131:0:0:131:4716:-417.036,-39.4349,0	1/1:107:0,107:0:0:107:3847:-339.15,-32.2102,0	1/1:82:0,82:0:0:82:2952:-260.017,-24.6845,0	1/1:78:0,78:0:0:78:2802:-250.006,-23.4803,0	1/1:53:0,53:0:0:53:1904:-168.098,-15.9546,0	1/1:40:0,40:0:0:40:1432:-127.018,-12.0412,0	1/1:33:0,33:0:0:33:1188:-105.738,-9.93399,0	1/1:36:0,36:0:0:36:1296:-114.31,-10.8371,0	1/1:134:1,133:1:36:133:4749:-416.551,-36.7712,0	1/1:137:0,137:0:0:137:4866:-427.875,-41.2411,0	1/1:71:0,71:0:0:71:2544:-223.65,-21.3731,0	1/1:103:0,103:0:0:103:3651:-325.071,-31.0061,0	0/1:65:33,32:33:1184:32:1152:-83.0301,0,-85.4189	1/1:117:0,117:0:0:117:4200:-371.806,-35.2205,0	0/1:201:78,123:78:2789:123:4392:-327.682,0,-185.784	1/1:287:2,285:2:57:285:10166:-890.604,-80.9823,0	0/1:51:16,35:16:572:35:1260:-96.2309,0,-35.4919	1/1:178:1,177:1:36:177:6332:-558.634,-50.0247,0	1/1:78:1,77:1:36:77:2756:-239.374,-19.9318,0	0/1:109:48,61:48:1704:61:2164:-159.831,0,-118.656	0/1:19:14,5:14:496:5:180:-10.6036,0,-37.7795	1/1:9:0,9:0:0:9:324:-29.0978,-2.70927,0	1/1:5:0,5:0:0:5:176:-16.0241,-1.50515,0	1/1:11:0,11:0:0:11:377:-33.6409,-3.31133,0	0/1:13:9,4:9:324:4:144:-9.25349,0,-25.2673	1/1:187:0,187:0:0:187:6697:-591.501,-56.2926,0	1/1:78:2,76:2:72:76:2728:-233.836,-16.7382,0	1/1:59:0,59:0:0:59:2120:-188.631,-17.7608,0	1/1:2:0,2:0:0:2:72:-5.80362,-0.60206,0	0/1:140:68,72:68:2436:72:2584:-185.852,0,-173.734	0/1:34:18,16:18:644:16:576:-41.0801,0,-47.271	1/1:73:0,73:0:0:73:2595:-228.996,-21.9752,0	1/1:69:0,69:0:0:69:2479:-220.352,-20.7711,0	1/1:52:0,52:0:0:52:1864:-164.564,-15.6536,0	1/1:108:0,108:0:0:108:3880:-342.76,-32.5112,0	1/1:64:0,64:0:0:64:2277:-202.084,-19.2659,0	0/1:130:82,48:82:2895:48:1705:-111.72,0,-219.354	1/1:78:0,78:0:0:78:2777:-246.151,-23.4803,0	1/1:86:0,86:0:0:86:3064:-272.476,-25.8886,0	1/1:149:0,149:0:0:149:5332:-473.42,-44.8535,0	1/1:12:0,12:0:0:12:424:-38.1707,-3.61236,0	0/1:108:54,54:54:1932:54:1917:-135.776,0,-138.147	1/1:61:0,61:0:0:61:2173:-193.183,-18.3628,0	1/1:1:0,1:0:0:1:36:-3.55862,-0.30103,0	0/1:152:66,86:66:2325:86:3069:-223.921,0,-160.412	1/1:63:0,63:0:0:63:2245:-198.312,-18.9649,0	1/1:14:0,14:0:0:14:496:-43.844,-4.21442,0	1/1:26:0,26:0:0:26:924:-82.2143,-7.82678,0	1/1:140:0,140:0:0:140:5013:-439.282,-42.1442,0	1/1:104:1,103:1:36:103:3703:-325.472,-27.7403,0	1/1:10:0,10:0:0:10:360:-32.458,-3.0103,0	1/1:117:0,117:0:0:117:4168:-366.789,-35.2205,0	1/1:127:3,124:3:108:124:4433:-384.283,-28.2437,0	0/1:76:39,37:39:1396:37:1328:-92.8289,0,-100.261	1/1:81:0,81:0:0:81:2893:-257.859,-24.3834,0	1/1:139:1,138:1:36:138:4940:-435.991,-38.2449,0	1/1:161:0,161:0:0:161:5703:-505.895,-48.4658,0	1/1:39:0,39:0:0:39:1400:-124.346,-11.7402,0	1/1:91:0,91:0:0:91:3241:-284.994,-27.3937,0	1/1:52:0,52:0:0:52:1872:-165.318,-15.6536,0	0/1:9:3,6:3:108:6:201:-15.5636,0,-7.2778	1/1:139:0,139:0:0:139:4978:-440.004,-41.8432,0	0/1:112:43,69:43:1518:69:2472:-184.415,0,-101.199	1/1:130:0,130:0:0:130:4641:-411.038,-39.1339,0	1/1:151:0,151:0:0:151:5408:-482.233,-45.4555,0	0/1:118:54,64:54:1932:64:2273:-165.54,0,-134.88	1/1:106:0,106:0:0:106:3774:-334.216,-31.9092,0	1/1:13:0,13:0:0:13:464:-41.6508,-3.91339,0	1/1:66:0,66:0:0:66:2367:-209.752,-19.868,0	0/1:83:49,34:49:1760:34:1220:-82.5603,0,-130.736	1/1:153:0,153:0:0:153:5476:-485.898,-46.0576,0	1/1:61:0,61:0:0:61:2196:-195.428,-18.3628,0	1/1:91:0,91:0:0:91:3272:-290.35,-27.3937,0	1/1:44:0,44:0:0:44:1580:-139.852,-13.2453,0	1/1:111:1,110:1:36:110:3956:-346.588,-29.8161,0	1/1:22:0,22:0:0:22:792:-69.4475,-6.62266,0	0/1:70:41,29:41:1472:29:1035:-70.2369,0,-109.873	0/1:90:42,48:42:1467:48:1709:-124.747,0,-103.559	1/1:45:0,45:0:0:45:1620:-141.879,-13.5464,0	0/1:109:54,55:54:1917:55:1979:-141.246,0,-136.261	0/1:94:65,29:65:2332:29:1024:-62.5228,0,-179.376	1/1:86:0,86:0:0:86:3057:-272.561,-25.8886,0	1/1:101:0,101:0:0:101:3632:-322.845,-30.404,0
chr08	16703078	.	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chr08	17075694	.	G	A	232574	PASS	AB=0.510179;ABP=5.22067;AC=165;AF=0.87766;AN=188;AO=10372;CIGAR=1X;DP=11591;DPB=11591;DPRA=0;EPP=22525.5;EPPR=2643.52;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.6986;MQMR=59.9383;NS=94;NUMALT=1;ODDS=5.2075;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=371466;QR=43437;RO=1216;RPL=0;RPP=22525.5;RPPR=2643.52;RPR=10372;RUN=1;SAF=10372;SAP=22525.5;SAR=0;SRF=1216;SRP=2643.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:84:0,84:0:0:84:3001:-270.297,-25.2865,0	1/1:231:0,231:0:0:231:8289:-745.395,-69.5379,0	1/1:172:0,172:0:0:172:6172:-555.56,-51.7772,0	1/1:269:0,269:0:0:269:9637:-867.122,-80.9771,0	1/1:129:0,129:0:0:129:4636:-417.389,-38.8329,0	1/1:113:0,112:0:0:112:4020:-361.121,-33.7154,0	1/1:250:0,250:0:0:250:8915:-802.198,-75.2575,0	1/1:136:0,136:0:0:136:4852:-436.728,-40.9401,0	1/1:118:0,118:0:0:118:4232:-381.028,-35.5215,0	1/1:125:0,124:0:0:124:4441:-399.482,-37.3277,0	1/1:36:0,36:0:0:36:1288:-116.223,-10.8371,0	1/1:70:0,70:0:0:70:2516:-226.63,-21.0721,0	1/1:49:0,49:0:0:49:1760:-158.608,-14.7505,0	1/1:50:0,50:0:0:50:1792:-161.376,-15.0515,0	1/1:45:0,45:0:0:45:1620:-146.078,-13.5464,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:33:0,33:0:0:33:1187:-107.125,-9.93399,0	1/1:31:0,31:0:0:31:1112:-100.383,-9.33193,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:312:1,311:1:36:311:11116:-996.708,-90.3231,0	1/1:202:1,201:1:32:201:7190:-643.925,-57.6087,0	1/1:215:0,215:0:0:215:7720:-694.774,-64.7215,0	1/1:178:1,177:1:36:177:6352:-568.147,-49.9851,0	0/1:132:65,67:65:2309:67:2388:-174.207,0,-168.333	1/1:112:0,112:0:0:112:4013:-361.347,-33.7154,0	0/1:373:171,202:171:6113:202:7214:-536.926,0,-437.986	1/1:263:1,262:1:36:262:9416:-843.619,-75.5726,0	0/1:26:16,10:16:576:10:360:-24.9129,0,-44.3482	1/1:370:1,369:1:36:369:13165:-1180.04,-107.783,0	1/1:178:1,177:1:36:177:6348:-567.61,-49.9851,0	0/1:178:99,79:99:3556:79:2840:-202.205,0,-266.664	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:154:0,154:0:0:154:5510:-496.007,-46.3586,0	1/1:261:0,261:0:0:261:9364:-842.642,-78.5688,0	1/1:45:0,45:0:0:45:1620:-146.073,-13.5464,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:202:96,106:96:3413:106:3800:-281.303,0,-245.872	0/1:46:19,27:19:680:27:972:-73.9367,0,-47.6818	1/1:212:0,212:0:0:212:7578:-681.804,-63.8184,0	1/1:36:0,36:0:0:36:1281:-115.589,-10.8371,0	1/1:51:0,51:0:0:51:1821:-164.139,-15.3525,0	1/1:174:0,174:0:0:174:6220:-559.882,-52.3792,0	1/1:187:0,187:0:0:187:6716:-604.379,-56.2926,0	0/1:273:142,131:142:5052:131:4678:-338.976,0,-372.644	1/1:192:0,192:0:0:192:6870:-618.219,-57.7978,0	1/1:184:0,184:0:0:184:6582:-592.441,-55.3895,0	1/1:295:0,294:0:0:294:10539:-947.998,-88.5028,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:262:122,140:122:4376:140:5028:-373.682,0,-315.143	1/1:99:0,99:0:0:99:3556:-320.242,-29.802,0	0/1:27:16,11:16:576:11:392:-27.484,0,-44.0472	0/1:205:100,105:100:3564:105:3768:-277.526,0,-259.25	1/1:78:0,78:0:0:78:2792:-251.518,-23.4803,0	1/1:7:0,7:0:0:7:248:-22.6525,-2.10721,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:115:0,115:0:0:115:4132:-372.038,-34.6185,0	1/1:74:0,74:0:0:74:2652:-238.903,-22.2762,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:262:1,261:1:36:261:9368:-839.37,-75.2716,0	1/1:204:1,203:1:36:203:7292:-652.572,-57.8118,0	0/1:108:44,64:44:1564:64:2296:-174.158,0,-108.54	1/1:152:0,152:0:0:152:5435:-489.266,-45.7566,0	1/1:235:1,234:1:36:234:8378:-750.18,-67.1438,0	1/1:166:0,166:0:0:166:5914:-532.29,-49.971,0	1/1:19:0,19:0:0:19:680:-61.5164,-5.71957,0	1/1:104:0,104:0:0:104:3709:-333.931,-31.3071,0	1/1:51:0,51:0:0:51:1813:-163.446,-15.3525,0	0/1:27:15,12:15:540:12:428:-30.731,0,-40.8087	1/1:178:0,178:0:0:178:6400:-575.534,-53.5833,0	0/1:69:26,43:26:936:43:1544:-118.474,0,-63.7884	1/1:186:0,186:0:0:186:6668:-600.114,-55.9916,0	1/1:273:0,273:0:0:273:9777:-879.848,-82.1812,0	0/1:130:71,59:71:2544:59:2124:-152.262,0,-190.077	1/1:146:0,146:0:0:146:5184:-466.629,-43.9504,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:165:0,165:0:0:165:5905:-531.539,-49.67,0	0/1:163:82,81:82:2917:81:2891:-211.354,0,-213.678	1/1:403:1,402:1:36:402:14373:-1289.42,-117.717,0	1/1:87:0,87:0:0:87:3113:-280.393,-26.1896,0	1/1:38:0,38:0:0:38:1364:-123.058,-11.4391,0	1/1:40:1,39:1:36:39:1404:-123.05,-8.44293,0	1/1:117:0,117:0:0:117:4200:-378.139,-35.2205,0	1/1:35:1,34:1:36:34:1220:-106.499,-6.93778,0	0/1:56:30,26:30:1072:26:921:-66.2773,0,-79.9348	0/1:58:29,29:29:1044:29:1040:-76.4546,0,-76.8151	1/1:25:0,25:0:0:25:900:-81.2852,-7.52575,0	0/1:56:29,27:29:1044:27:968:-70.5797,0,-77.4156	0/1:37:20,17:20:716:17:612:-44.2749,0,-53.6296	1/1:138:0,138:0:0:138:4938:-444.326,-41.5421,0	1/1:77:1,76:1:21:76:2732:-244.015,-21.0794,0
chr08	17075734	.	C	A	20441.3	PASS	AB=0.491484;ABP=4.56362;AC=23;AF=0.12234;AN=188;AO=1226;CIGAR=1X;DP=11595;DPB=11595;DPRA=1.25977;EPP=2665.24;EPPR=22501.6;GTI=2;LEN=1;MEANALT=1.05556;MQM=59.8989;MQMR=59.7218;NS=94;NUMALT=1;ODDS=4.75407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44033;QR=370323;RO=10365;RPL=1226;RPP=2665.24;RPPR=22501.6;RPR=0;RUN=1;SAF=1226;SAP=2665.24;SAR=0;SRF=10365;SRP=22510.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:81:81,0:81:2885:0:0:0,-24.3834,-259.863	0/0:233:233,0:233:8333:0:0:0,-70.14,-749.349	0/0:176:176,0:176:6287:0:0:0,-52.9813,-565.906	0/0:267:266,1:266:9541:1:36:0,-76.7767,-854.863	0/0:129:129,0:129:4587:0:0:0,-38.8329,-412.981	0/0:112:112,0:112:4019:0:0:0,-33.7154,-361.381	0/0:248:247,1:247:8813:1:36:0,-71.0623,-789.376	0/0:134:134,0:134:4771:0:0:0,-40.338,-429.489	0/0:117:117,0:117:4181:0:0:0,-35.2205,-376.46	0/0:124:123,1:123:4403:1:36:0,-33.7312,-392.832	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.223	0/0:71:71,0:71:2548:0:0:0,-21.3731,-228.572	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.157	0/0:51:51,0:51:1806:0:0:0,-15.3525,-162.623	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.839	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.736	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.22	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:315:315,0:315:11269:0:0:0,-94.8244,-1014.06	0/0:203:202,1:202:7176:1:36:0,-57.5108,-642.162	0/0:212:212,0:212:7579:0:0:0,-63.8184,-682.118	0/0:180:180,0:180:6427:0:0:0,-54.1854,-578.493	0/1:132:66,66:66:2346:66:2372:-174.001,0,-171.316	0/0:111:111,0:111:3958:0:0:0,-33.4143,-356.397	0/1:376:203,173:203:7240:173:6216:-446.344,0,-538.356	0/0:263:262,1:262:9352:1:36:0,-75.5726,-837.866	0/1:26:10,16:10:360:16:576:-44.3482,0,-24.9129	0/0:367:366,0:366:13088:0:0:0,-110.177,-1177.13	0/0:177:176,1:176:6265:1:36:0,-49.684,-560.182	0/1:180:80,100:80:2876:100:3592:-269.3,0,-204.841	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:155:155,0:155:5542:0:0:0,-46.6596,-498.877	0/0:258:258,0:258:9196:0:0:0,-77.6657,-827.532	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.993	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:200:104,96:104:3716:96:3448:-250.322,0,-274.378	0/1:46:27,19:27:972:19:684:-48.0429,0,-73.9367	0/0:212:212,0:212:7556:0:0:0,-63.8184,-679.883	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.861	0/0:48:48,0:48:1695:0:0:0,-14.4494,-152.819	0/0:171:171,0:171:6103:0:0:0,-51.4761,-549.363	0/0:186:186,0:186:6638:0:0:0,-55.9916,-597.465	0/1:274:129,144:129:4598:144:5176:-383.435,0,-331.423	0/0:193:192,1:192:6895:1:32:0,-54.9626,-617.458	0/0:192:192,0:192:6841:0:0:0,-57.7978,-615.732	0/0:296:296,0:296:10551:0:0:0,-89.1049,-949.441	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:262:140,122:140:5007:122:4388:-316.221,0,-371.795	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.432	0/1:27:11,16:11:396:16:572:-43.6856,0,-27.8467	0/1:203:105,98:105:3740:98:3501:-254.174,0,-275.661	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.427	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6354	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:113:113,0:113:4045:0:0:0,-34.0164,-364.214	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.835	0/1:8:7,1:7:239:1:36:-1.19004,0,-19.4345	0/0:261:260,1:260:9312:1:36:0,-74.9706,-833.809	0/0:208:206,2:206:7370:2:72:0,-55.7775,-656.353	0/1:109:65,44:65:2331:44:1576:-109.319,0,-177.009	0/0:153:153,0:153:5491:0:0:0,-46.0576,-494.302	0/0:235:234,1:234:8366:1:36:0,-67.1438,-749.147	0/0:165:164,1:164:5883:1:36:0,-46.1489,-526.034	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.1552	0/0:104:104,0:104:3710:0:0:0,-31.3071,-333.936	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.157	0/1:27:12,15:12:417:15:540:-40.8087,0,-29.7324	0/0:177:177,0:177:6328:0:0:0,-53.2823,-569.549	0/1:68:43,25:43:1544:25:900:-60.851,0,-118.775	0/0:187:187,0:187:6667:0:0:0,-56.2926,-600.009	0/0:273:273,0:273:9783:0:0:0,-82.1812,-880.395	0/1:135:60,75:60:2143:75:2696:-202.245,0,-152.448	0/0:145:144,1:144:5130:1:36:0,-40.0663,-458.211	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:165:165,0:165:5928:0:0:0,-49.6699,-533.609	0/1:165:83,82:83:2941:82:2948:-215.863,0,-215.246	0/0:404:403,0:403:14377:0:0:0,-121.315,-1293.24	0/0:86:86,0:86:3083:0:0:0,-25.8886,-277.694	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.058	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.527	0/0:118:118,0:118:4186:0:0:0,-35.5215,-376.881	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.532	0/1:55:26,29:26:924:29:1044:-77.7182,0,-66.6497	0/1:58:28,30:28:1004:30:1076:-79.6931,0,-73.2161	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.2852	0/1:57:27,30:27:972:30:1080:-80.353,0,-70.6392	0/1:38:17,21:17:612:21:752:-56.5671,0,-43.9739	0/0:133:131,1:131:4691:1:36:0,-36.609,-418.838	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.284
chr08	17075742	.	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chr08	17140477	.	C	A	21694.7	PASS	AB=0.533506;ABP=21.782;AC=21;AF=0.111702;AN=188;AO=1046;CIGAR=1X;DP=8855;DPB=8855;DPRA=1.46216;EPP=979.957;EPPR=7571.36;GTI=0;LEN=1;MEANALT=1.03571;MQM=58.3203;MQMR=59.8926;NS=94;NUMALT=1;ODDS=2.57016;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37395;QR=279433;RO=7803;RPL=866;RPP=979.957;RPPR=7571.36;RPR=180;RUN=1;SAF=1046;SAP=2274.37;SAR=0;SRF=7803;SRP=16947;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.61	0/0:294:294,0:294:10558:0:0:0,-88.5028,-950.106	0/0:181:181,0:181:6475:0:0:0,-54.4864,-582.835	0/0:156:155,1:155:5548:1:36:0,-43.3624,-495.818	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.913	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.64	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.379	0/0:138:137,0:137:4907:0:0:0,-41.2411,-441.416	0/0:102:102,0:102:3647:0:0:0,-30.7051,-327.847	0/0:115:114,1:114:4092:1:36:0,-31.0202,-364.865	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.248	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.449	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.348	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.373	0/0:105:105,0:105:3752:0:0:0,-31.6081,-337.862	0/0:159:159,0:159:5643:0:0:0,-47.8638,-507.97	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.986	0/0:80:80,0:80:2867:0:0:0,-24.0824,-258.263	0/1:159:76,83:76:2728:83:2969:-219.299,0,-197.897	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:315:151,164:151:5428:164:5874:-433.851,0,-393.805	0/0:140:140,0:140:5024:0:0:0,-42.1442,-452.259	0/1:25:12,13:12:428:13:453:-33.5278,0,-31.3331	0/0:200:199,0:199:7140:0:0:0,-59.905,-642.29	0/0:384:373,11:373:13370:11:396:0,-79.6712,-1167.06	0/1:118:57,61:57:2036:61:2165:-159.02,0,-147.987	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:5:4,1:4:144:1:32:-1.69376,0,-11.8085	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.817	0/1:10:7,3:7:248:3:108:-6.82767,0,-19.6539	0/0:160:160,0:160:5729:0:0:0,-48.1648,-515.678	0/0:249:249,0:249:8937:0:0:0,-74.9565,-804.225	0/0:56:56,0:56:1999:0:0:0,-16.8577,-179.065	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:118:60,56:60:2125:56:2004:-144.991,0,-156.238	0/1:24:8,16:8:288:16:572:-44.4976,0,-19.0427	0/0:133:133,0:133:4736:0:0:0,-40.037,-426.396	0/0:74:73,0:73:2615:0:0:0,-21.9752,-235.237	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.756	0/0:98:98,0:98:3520:0:0:0,-29.5009,-316.991	0/0:116:116,0:116:4144:0:0:0,-34.9195,-373.14	0/1:157:83,74:83:2967:74:2630:-189.626,0,-219.631	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.214	0/0:106:106,0:106:3789:0:0:0,-31.9092,-340.672	0/0:172:171,0:171:6111:0:0:0,-51.4761,-549.724	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:203:104,99:104:3722:99:3544:-257.604,0,-274.064	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:4:1,3:1:36:3:108:-8.86823,0,-2.39415	0/1:124:55,69:55:1967:69:2469:-185.081,0,-139.977	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.418	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:110:109,1:109:3924:1:32:0,-29.914,-350.151	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:177:177,0:177:6335:0:0:0,-53.2823,-570.241	0/0:210:207,3:207:7394:3:108:0,-53.1411,-655.203	0/1:97:53,44:53:1908:44:1578:-112.772,0,-142.796	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:234:233,1:233:8312:1:36:0,-66.8742,-744.377	0/0:120:120,0:120:4298:0:0:0,-36.1236,-386.986	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.062	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.436	0/1:20:9,11:9:315:11:392:-29.5709,0,-22.6666	0/0:127:127,0:127:4543:0:0:0,-38.2308,-408.961	0/1:86:36,50:36:1278:50:1796:-135.512,0,-89.4322	0/0:150:150,0:150:5376:0:0:0,-45.1545,-483.97	0/0:147:147,0:147:5263:0:0:0,-44.2514,-473.806	0/1:126:58,68:58:2067:68:2425:-180.305,0,-148.369	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.57	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:112:112,0:112:4028:0:0:0,-33.7154,-362.707	0/1:77:31,46:31:1112:46:1652:-125.118,0,-77.2111	0/0:256:255,1:255:9132:1:36:0,-73.4654,-818.251	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.607	0/0:115:115,0:115:4132:0:0:0,-34.6184,-371.998	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.153	0/1:44:17,27:17:608:27:957:-73.0356,0,-41.8058	0/1:52:18,34:18:648:34:1216:-93.9791,0,-42.9983	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.893	0/1:115:46,69:46:1656:69:2479:-188.195,0,-114.71	0/1:46:10,36:10:360:36:1292:-102.623,0,-18.8969	0/0:116:116,0:116:4155:0:0:0,-34.9195,-374.132	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897
chr08	18405100	.	C	T	13027.4	PASS	AB=0.522985;ABP=9.89796;AC=23;AF=0.12234;AN=188;AO=798;CIGAR=1X;DP=7627;DPB=7627;DPRA=1.08623;EPP=1735.85;EPPR=14669.5;GTI=1;LEN=1;MEANALT=1.06061;MQM=59.9962;MQMR=59.994;NS=94;NUMALT=1;ODDS=0.725626;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28250;QR=241047;RO=6826;RPL=798;RPP=1735.85;RPPR=14660.9;RPR=0;RUN=1;SAF=798;SAP=1735.85;SAR=0;SRF=6825;SRP=14816.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:83:83,0:83:2929:0:0:0,-24.9855,-263.845	0/0:48:48,0:48:1687:0:0:0,-14.4494,-152.113	0/0:102:102,0:102:3610:0:0:0,-30.7051,-325.106	0/0:135:134,1:134:4694:1:36:0,-37.0408,-419.022	0/0:54:54,0:54:1908:0:0:0,-16.2556,-171.995	0/0:54:54,0:54:1907:0:0:0,-16.2556,-171.907	0/0:102:102,0:102:3617:0:0:0,-30.7051,-325.734	0/0:86:86,0:86:3045:0:0:0,-25.8886,-274.28	0/0:105:105,0:105:3712:0:0:0,-31.6081,-334.263	0/0:60:60,0:60:2125:0:0:0,-18.0618,-191.517	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/0:114:114,0:114:4014:0:0:0,-34.3174,-361.452	0/0:94:94,0:94:3302:0:0:0,-28.2968,-297.4	0/0:44:44,0:44:1535:0:0:0,-13.2453,-138.438	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.349	0/0:71:71,0:71:2493:0:0:0,-21.3731,-224.623	0/0:45:45,0:45:1576:0:0:0,-13.5463,-142.128	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/0:22:22,0:22:769:0:0:0,-6.62266,-69.5286	0/0:184:184,0:184:6430:0:0:0,-55.3895,-578.789	0/0:110:110,0:110:3872:0:0:0,-33.1133,-348.673	0/0:128:128,0:128:4507:0:0:0,-38.5318,-405.801	0/0:129:129,0:129:4547:0:0:0,-38.8329,-409.398	0/1:65:28,37:28:981:37:1328:-100.255,0,-69.0339	0/0:108:108,0:108:3847:0:0:0,-32.5112,-346.427	0/1:214:98,116:98:3435:116:4107:-305.397,0,-244.943	0/0:207:206,1:206:7286:1:36:0,-58.7149,-652.196	0/1:37:23,14:23:828:14:496:-33.8362,0,-63.706	0/0:190:188,1:188:6583:1:36:0,-53.6363,-588.976	0/0:70:66,4:66:2359:4:144:0,-7.75848,-199.254	0/1:69:32,37:32:1113:37:1294:-95.9884,0,-79.7038	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:16:10,6:10:360:6:207:-14.1504,0,-27.9278	0/0:204:204,0:204:7135:0:0:0,-61.4101,-642.22	0/0:114:114,0:114:4021:0:0:0,-34.3174,-362.083	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:97:40,57:40:1419:57:2036:-154.312,0,-98.8067	0/1:29:16,13:16:568:13:446:-31.7365,0,-42.722	0/0:152:152,0:152:5394:0:0:0,-45.7566,-485.593	0/0:68:68,0:68:2420:0:0:0,-20.47,-218.057	0/0:55:55,0:55:1950:0:0:0,-16.5566,-175.775	0/0:127:127,0:127:4516:0:0:0,-38.2308,-406.608	0/0:69:69,0:69:2453:0:0:0,-20.7711,-221.023	0/1:132:67,65:67:2378:65:2298:-167.345,0,-174.541	0/0:93:93,0:93:3318:0:0:0,-27.9958,-298.838	0/0:36:36,0:36:1258:0:0:0,-10.8371,-113.518	0/0:209:209,0:209:7375:0:0:0,-62.9153,-663.801	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/1:131:51,80:51:1813:80:2864:-218.562,0,-124.015	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/1:9:4,5:4:144:5:167:-12.6491,0,-10.6043	0/1:115:50,65:50:1779:65:2303:-172.912,0,-125.774	0/0:72:72,0:72:2523:0:0:0,-21.6742,-227.321	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/0:71:71,0:71:2511:0:0:0,-21.3731,-226.24	0/0:100:100,0:100:3535:0:0:0,-30.103,-318.36	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:134:134,0:134:4766:0:0:0,-40.338,-429.097	0/0:133:132,1:132:4653:1:36:0,-36.4387,-415.335	0/1:35:20,15:20:708:15:528:-37.3153,0,-53.5095	0/0:64:64,0:64:2235:0:0:0,-19.2659,-201.41	0/0:112:112,0:112:3956:0:0:0,-33.7154,-356.234	0/0:96:96,0:96:3420:0:0:0,-28.8989,-308.013	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:52:51,0:51:1806:0:0:0,-15.3525,-162.549	0/1:16:9,7:9:311:7:244:-17.4829,0,-23.5072	0/0:175:174,1:174:6158:1:36:0,-49.082,-550.72	0/1:76:36,40:36:1283:40:1405:-103.867,0,-92.8943	0/0:138:138,0:138:4901:0:0:0,-41.5421,-441.242	0/0:99:98,1:98:3435:1:36:0,-26.2037,-305.765	0/1:86:43,43:43:1492:43:1532:-112.285,0,-108.682	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:59:58,1:58:2038:1:36:0,-14.1625,-180.091	0/1:62:28,34:28:1004:34:1195:-89.1907,0,-72.012	0/0:253:253,0:253:8975:0:0:0,-76.1606,-807.734	0/0:72:72,0:72:2497:0:0:0,-21.6742,-224.979	0/0:78:78,0:78:2755:0:0:0,-23.4803,-248.191	0/0:63:63,0:63:2218:0:0:0,-18.9649,-199.778	0/0:173:172,1:172:6073:1:36:0,-48.4799,-543.08	0/0:34:34,0:34:1186:0:0:0,-10.235,-107.043	0/1:96:50,45:50:1766:45:1604:-115.732,0,-130.303	0/1:66:29,37:29:1001:37:1296:-97.0704,0,-70.5298	0/0:37:37,0:37:1303:0:0:0,-11.1381,-117.571	0/1:64:40,24:40:1402:24:856:-58.0952,0,-107.21	0/1:63:28,35:28:986:35:1220:-91.1342,0,-70.0873	0/0:81:80,1:80:2812:1:36:0,-20.7852,-249.719	0/0:130:130,0:130:4615:0:0:0,-39.1339,-415.514
chr08	18405188	.	G	C,T	252121	PASS	AB=0.477291,0.522709;ABP=13.8587,13.8587;AC=164,22;AF=0.88172,0.11828;AN=186;AO=9968,1289;CIGAR=1X,1X;DP=11272;DPB=11272;DPRA=0,0.959863;EPP=21648.2,2802.04;EPPR=16.0391;GTI=1;LEN=1,1;MEANALT=1.44086,2.03125;MQM=59.996,60;MQMR=60;NS=93;NUMALT=2;ODDS=0.037511;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=356105,46136;QR=186;RO=6;RPL=9968,1289;RPP=21648.2,2802.04;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=0,0;SAP=21648.2,2802.04;SAR=9968,1289;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57,0:0:0:57,0:2042,0:-184.052,-17.1587,0,-184.052,-17.1587,-184.052	1/1:235:0,235,0:0:0:235,0:8404,0:-756.358,-70.7421,0,-756.358,-70.7421,-756.358	1/1:124:0,124,0:0:0:124,0:4440,0:-399.771,-37.3277,0,-399.771,-37.3277,-399.771	1/1:266:0,265,0:0:0:265,0:9417,0:-847.133,-79.773,0,-847.133,-79.773,-847.133	1/1:90:0,87,3:0:0:87,3:3120,108:-280.666,-26.1896,0,-271.854,-17.0175,-270.951	1/1:53:0,53,0:0:0:53,0:1896,0:-170.918,-15.9546,0,-170.918,-15.9546,-170.918	1/1:111:0,110,1:0:0:110,1:3929,32:-353.481,-33.1133,0,-350.903,-30.215,-350.602	1/1:166:0,164,2:0:0:164,2:5850,72:-526.251,-49.3689,0,-520.376,-43.1343,-519.774	1/1:110:0,110,0:0:0:110,0:3944,0:-355.151,-33.1133,0,-355.151,-33.1133,-355.151	1/1:176:0,176,0:0:0:176,0:6297,0:-566.821,-52.9813,0,-566.821,-52.9813,-566.821	1/1:50:0,50,0:0:0:50,0:1796,0:-161.922,-15.0515,0,-161.922,-15.0515,-161.922	1/1:70:0,70,0:0:0:70,0:2516,0:-226.692,-21.0721,0,-226.692,-21.0721,-226.692	1/1:71:0,71,0:0:0:71,0:2544,0:-229.211,-21.3731,0,-229.211,-21.3731,-229.211	1/1:65:0,64,1:0:0:64,1:2288,36:-205.822,-19.2659,0,-202.884,-15.9687,-202.583	1/1:76:0,76,0:0:0:76,0:2724,0:-245.403,-22.8783,0,-245.403,-22.8783,-245.403	1/1:61:0,61,0:0:0:61,0:2188,0:-197.186,-18.3628,0,-197.186,-18.3628,-197.186	1/1:74:0,74,0:0:0:74,0:2656,0:-239.286,-22.2762,0,-239.286,-22.2762,-239.286	1/1:81:0,81,0:0:0:81,0:2912,0:-262.315,-24.3834,0,-262.315,-24.3834,-262.315	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:220:0,220,0:0:0:220,0:7850,0:-706.527,-66.2266,0,-706.527,-66.2266,-706.527	1/1:170:0,170,0:0:0:170,0:6086,0:-547.838,-51.1751,0,-547.838,-51.1751,-547.838	1/1:162:0,162,0:0:0:162,0:5793,0:-521.483,-48.7669,0,-521.483,-48.7669,-521.483	1/1:95:0,95,0:0:0:95,0:3416,0:-307.653,-28.5979,0,-307.653,-28.5979,-307.653	1/2:149:0,72,77:0:0:72,77:2565,2756:-434.17,-225.103,-203.428,-209.424,0,-186.245	1/1:90:0,90,0:0:0:90,0:3232,0:-291.101,-27.0927,0,-291.101,-27.0927,-291.101	1/2:436:0,236,200:0:0:236,200:8457,7168:-1274.7,-584.969,-513.926,-690.086,0,-629.88	1/1:220:0,220,0:0:0:220,0:7888,0:-709.942,-66.2266,0,-709.942,-66.2266,-709.942	1/2:51:0,26,25:0:0:26,25:936,900:-150.168,-73.7953,-65.9685,-76.7327,0,-69.2069	1/1:338:0,338,0:0:0:338,0:12094,0:-1088.31,-101.748,0,-1088.31,-101.748,-1088.31	1/1:300:0,293,7:0:0:293,7:10465,252:-941.41,-88.2018,0,-920.848,-67.28,-918.741	1/2:188:0,81,107:0:0:81,107:2881,3836:-548.012,-313.226,-288.842,-235.142,0,-202.932	1/2:11:0,10,1:0:0:10,1:360,36:-32.6714,-3.29724,-0.286945,-29.734,0,-29.433	1/1:31:0,31,0:0:0:31,0:1101,0:-99.3984,-9.33193,0,-99.3984,-9.33193,-99.3984	1/2:13:0,11,2:0:0:11,2:384,68:-37.0977,-5.85565,-2.54432,-31.5833,0,-30.9813	1/1:10:0,10,0:0:0:10,0:352,0:-32.0182,-3.0103,0,-32.0182,-3.0103,-32.0182	1/2:9:0,7,2:0:0:7,2:252,68:-26.4331,-5.85565,-3.74844,-20.9217,0,-20.3197	1/1:267:2,264,0:2:57:264,0:9468,0:-846.688,-74.8956,0,-847.29,-79.4719,-851.816	1/1:294:0,293,0:0:0:293,0:10473,0:-942.127,-88.2018,0,-942.127,-88.2018,-942.127	1/1:68:0,68,0:0:0:68,0:2436,0:-219.495,-20.47,0,-219.495,-20.47,-219.495	.:.:.:.:.:.:.:.	1/2:170:0,86,84:0:0:86,84:3068,3008:-495.768,-245.665,-219.776,-250.461,0,-225.174	1/2:32:0,14,18:0:0:14,18:504,644:-93.9969,-52.8721,-48.6576,-41.4837,0,-36.0651	1/1:181:0,181,0:0:0:181,0:6485,0:-583.732,-54.4864,0,-583.732,-54.4864,-583.732	1/1:117:1,116,0:1:36:116,0:4145,0:-369.634,-31.6222,0,-369.935,-34.9195,-372.872	1/1:79:2,77,0:2:72:77,0:2726,0:-238.744,-16.9446,0,-239.346,-23.1793,-245.221	1/1:126:0,126,0:0:0:126,0:4486,0:-403.908,-37.9298,0,-403.908,-37.9298,-403.908	1/1:161:0,160,0:0:0:160,0:5686,0:-511.5,-48.1648,0,-511.5,-48.1648,-511.5	1/2:234:0,111,123:0:0:111,123:3984,4404:-684.482,-359.506,-326.091,-325.335,0,-288.308	1/1:90:0,90,0:0:0:90,0:3185,0:-286.875,-27.0927,0,-286.875,-27.0927,-286.875	1/1:179:0,179,0:0:0:179,0:6398,0:-575.906,-53.8844,0,-575.906,-53.8844,-575.906	1/1:181:0,181,0:0:0:181,0:6477,0:-583.014,-54.4864,0,-583.014,-54.4864,-583.014	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:152:0,62,90:0:0:62,90:2216,3201:-441.905,-261.22,-242.556,-181.041,0,-153.948	1/1:39:0,39,0:0:0:39,0:1392,0:-125.579,-11.7402,0,-125.579,-11.7402,-125.579	1/2:23:0,12,11:0:0:12,11:432,392:-67.5596,-32.3087,-28.6964,-35.6088,0,-32.2975	1/2:137:0,65,72:0:0:65,72:2313,2569:-398.29,-209.784,-190.217,-188.862,0,-167.188	1/1:120:0,119,0:0:0:119,0:4249,0:-382.377,-35.8226,0,-382.377,-35.8226,-382.377	1/1:17:0,17,0:0:0:17,0:593,0:-53.6947,-5.1175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chr08	18476529	.	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chr08	18476536	.	T	C	8619.52	PASS	AB=0.438088;ABP=45.4936;AC=21;AF=0.112903;AN=186;AO=565;CIGAR=1X;DP=6284;DPB=6284;DPRA=0.938029;EPP=1229.89;EPPR=12309;GTI=1;LEN=1;MEANALT=1;MQM=59.7133;MQMR=59.943;NS=93;NUMALT=1;ODDS=6.4053;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20065;QR=204836;RO=5719;RPL=565;RPP=1229.89;RPPR=12309;RPR=0;RUN=1;SAF=565;SAP=1229.89;SAR=0;SRF=5719;SRP=12421.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:66:66,0:66:2376:0:0:0,-19.868,-213.907	0/0:48:48,0:48:1719:0:0:0,-14.4494,-154.995	0/0:103:103,0:103:3691:0:0:0,-31.0061,-332.391	0/0:112:112,0:112:3996:0:0:0,-33.7154,-359.828	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:116:115,1:115:4128:1:36:0,-31.3212,-368.105	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:83:83,0:83:2935:0:0:0,-24.9855,-264.381	0/0:67:67,0:67:2375:0:0:0,-20.169,-214.005	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.664	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7214	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0059	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:214:214,0:214:7676:0:0:0,-64.4204,-690.165	0/0:93:93,0:93:3339:0:0:0,-27.9958,-300.726	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.466	0/0:49:48,1:48:1712:1:27:0,-12.0507,-151.666	0/1:59:38,21:38:1368:21:756:-50.5972,0,-105.66	0/0:102:102,0:102:3647:0:0:0,-30.7051,-328.426	0/1:160:96,64:96:3423:64:2283:-157.565,0,-260.064	0/0:179:179,0:179:6404:0:0:0,-53.8844,-576.445	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/0:156:156,0:156:5599:0:0:0,-46.9607,-504.025	0/0:94:92,2:92:3288:2:72:0,-21.4601,-289.303	0/1:70:37,33:37:1319:33:1167:-84.2561,0,-97.9391	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6371	.:.:.:.:.:.:.:.	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:20:18,2:18:644:2:72:-0.816123,0,-52.2667	0/0:170:170,0:170:6089:0:0:0,-51.1751,-548.101	0/0:106:106,0:106:3790:0:0:0,-31.9092,-341.297	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:86:55,31:55:1980:31:1112:-74.5028,0,-152.585	0/1:25:15,10:15:540:10:360:-24.9462,0,-41.4108	0/0:151:151,0:151:5365:0:0:0,-45.4555,-482.973	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.921	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.623	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:106:50,56:50:1783:56:1991:-147.526,0,-128.842	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.728	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.702	0/0:81:81,0:81:2903:0:0:0,-24.3834,-261.502	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:96:63,33:63:2268:33:1172:-76.8886,0,-175.483	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:91:36,55:36:1296:55:1949:-148.286,0,-89.5502	0/0:46:45,1:45:1616:1:36:0,-10.2491,-142.118	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:96:95,1:95:3397:1:36:0,-25.3006,-302.345	0/1:24:13,11:13:468:11:396:-28.7534,0,-35.2349	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.931	0/0:111:111,0:111:3964:0:0:0,-33.4143,-356.937	0/0:23:23,0:23:806:0:0:0,-6.92369,-72.8582	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.563	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:25:10,15:10:360:15:536:-41.0491,0,-25.2186	0/0:156:156,0:156:5586:0:0:0,-46.9607,-502.851	0/1:91:58,33:58:2080:33:1184:-79.4664,0,-160.059	0/0:122:122,0:122:4369:0:0:0,-36.7257,-393.382	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/1:90:56,34:56:2007:34:1199:-81.1045,0,-153.81	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.473	0/1:45:21,24:21:747:24:848:-63.0933,0,-54.008	0/0:162:162,0:162:5803:0:0:0,-48.7669,-522.381	0/0:56:56,0:56:2012:0:0:0,-16.8577,-180.983	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:106:106,0:106:3816:0:0:0,-31.9092,-343.607	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:59:31,28:31:1108:28:967:-69.5279,0,-82.2702	0/1:44:18,26:18:648:26:912:-69.1396,0,-45.4066	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:98:58,40:58:2079:40:1419:-98.4881,0,-157.879	0/1:44:18,26:18:639:26:923:-70.1414,0,-44.5929	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.04	0/0:66:66,0:66:2358:0:0:0,-19.868,-212.477
chr08	18476553	.	G	A	8843.67	PASS	AB=0.447597;ABP=33.2792;AC=21;AF=0.112903;AN=186;AO=574;CIGAR=1X;DP=6204;DPB=6204;DPRA=0.945269;EPP=1249.44;EPPR=12219.7;GTI=1;LEN=1;MEANALT=1.03846;MQM=59.6882;MQMR=59.9609;NS=93;NUMALT=1;ODDS=7.30731;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20379;QR=200760;RO=5626;RPL=574;RPP=1249.44;RPPR=12219.7;RPR=0;RUN=1;SAF=574;SAP=1249.44;SAR=0;SRF=5626;SRP=12219.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:100:100,0:100:3536:0:0:0,-30.103,-318.443	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/0:57:56,0:56:1988:0:0:0,-16.8577,-178.832	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:115:114,1:114:4077:1:36:0,-31.0202,-363.516	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.213	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/0:41:41,0:41:1456:0:0:0,-12.3422,-131.336	0/0:82:82,0:82:2917:0:0:0,-24.6845,-262.764	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.796	0/0:49:49,0:49:1731:0:0:0,-14.7505,-156.074	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0312	0/0:21:21,0:21:727:0:0:0,-6.32163,-65.7491	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:209:209,0:209:7479:0:0:0,-62.9153,-673.076	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.72	0/0:50:49,1:49:1732:1:36:0,-11.4532,-152.564	0/1:58:37,21:37:1313:21:752:-50.5373,0,-101.01	0/0:99:99,0:99:3525:0:0:0,-29.802,-317.459	0/1:162:92,69:92:3253:69:2468:-173.539,0,-244.164	0/0:182:182,0:182:6476:0:0:0,-54.7875,-582.928	0/1:24:14,10:14:504:10:356:-25.1565,0,-38.4734	0/0:151:150,0:150:5361:0:0:0,-45.1545,-482.257	0/0:92:90,2:90:3236:2:72:0,-20.858,-284.624	0/1:71:36,35:36:1280:35:1252:-91.6038,0,-94.1301	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2761	.:.:.:.:.:.:.:.	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:19:17,2:17:612:2:72:-1.11715,0,-49.6939	0/0:168:168,0:168:6005:0:0:0,-50.573,-540.546	0/0:103:103,0:103:3676:0:0:0,-31.0061,-331.044	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:83:53,30:53:1895:30:1076:-72.1674,0,-145.842	0/1:25:15,10:15:536:10:346:-23.5872,0,-41.0491	0/0:146:146,0:146:5216:0:0:0,-43.9504,-469.58	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:49:49,0:49:1738:0:0:0,-14.7505,-156.701	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.349	0/1:107:48,59:48:1702:59:2104:-157.391,0,-121.253	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.941	0/0:80:80,0:80:2855:0:0:0,-24.0824,-257.185	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:95:61,34:61:2184:34:1204:-80.068,0,-168.228	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0833	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:89:37,52:37:1323:52:1834:-138.543,0,-92.5796	0/0:44:43,1:43:1536:1:36:0,-9.64704,-134.935	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:57:57,0:57:2013:0:0:0,-17.1587,-181.442	0/0:97:97,0:97:3454:0:0:0,-29.1999,-311.073	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:95:94,1:94:3364:1:36:0,-24.9996,-299.378	0/1:24:13,11:13:468:11:392:-28.3907,0,-35.2349	0/0:46:46,0:46:1621:0:0:0,-13.8474,-146.177	0/0:94:94,0:94:3342:0:0:0,-28.2968,-300.992	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.662	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.014	0/0:40:40,0:40:1419:0:0:0,-12.0412,-128.007	0/1:25:10,15:10:356:15:528:-40.3256,0,-24.8555	0/0:150:150,0:150:5353:0:0:0,-45.1545,-481.903	0/1:92:57,35:57:2040:35:1236:-83.8413,0,-156.16	0/0:119:118,0:118:4205:0:0:0,-35.5215,-378.271	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/1:87:54,33:54:1925:33:1171:-79.5071,0,-147.335	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/0:77:77,0:77:2740:0:0:0,-23.1793,-246.827	0/1:46:22,24:22:779:24:848:-62.7923,0,-56.5847	0/0:160:160,0:160:5723:0:0:0,-48.1648,-515.185	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.343	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/0:102:102,0:102:3647:0:0:0,-30.7051,-328.434	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:60:32,28:32:1116:28:981:-70.4573,0,-82.6828	0/1:42:16,26:16:568:26:928:-71.1868,0,-38.8086	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:96:57,39:57:2016:39:1372:-94.8726,0,-152.812	0/1:44:17,27:17:608:27:955:-73.0195,0,-41.8067	0/0:59:59,0:59:2124:0:0:0,-17.7608,-190.801	0/0:66:66,0:66:2344:0:0:0,-19.868,-211.2
chr08	18476561	.	TAC	TC,TTC	132490	PASS	AB=0.547276,0.451122;ABP=27.2375,28.9079;AC=165,21;AF=0.887097,0.112903;AN=186;AO=5484,568;CIGAR=1M1D1M,1M1X1M;DP=6054;DPB=4226;DPRA=0,0.969644;EPP=11911.4,1236.41;EPPR=0;GTI=1;LEN=1,1;MEANALT=1.29032,2.08;MQM=59.9539,59.6655;MQMR=0;NS=93;NUMALT=2;ODDS=6.99341;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=192276,20167;QR=0;RO=0;RPL=5484,568;RPP=11911.4,1236.41;RPPR=0;RPR=0,0;RUN=1,1;SAF=5484,568;SAP=11911.4,1236.41;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:63:0,63,0:0:0:63,0:2212,0:-199.343,-18.9649,0,-199.343,-18.9649,-199.343	1/1:49:0,49,0:0:0:49,0:1726,0:-155.623,-14.7505,0,-155.623,-14.7505,-155.623	1/1:100:0,100,0:0:0:100,0:3454,0:-311.069,-30.103,0,-311.069,-30.103,-311.069	1/1:109:0,109,0:0:0:109,0:3827,0:-344.631,-32.8123,0,-344.631,-32.8123,-344.631	1/1:56:0,56,0:0:0:56,0:1982,0:-178.653,-16.8577,0,-178.653,-16.8577,-178.653	1/1:25:0,25,0:0:0:25,0:875,0:-79.0661,-7.52575,0,-79.0661,-7.52575,-79.0661	1/1:67:0,67,0:0:0:67,0:2311,0:-208.248,-20.169,0,-208.248,-20.169,-208.248	1/1:112:0,111,1:0:0:111,1:3923,32:-352.944,-33.4143,0,-350.366,-30.516,-350.065	1/1:85:0,85,0:0:0:85,0:2971,0:-267.624,-25.5876,0,-267.624,-25.5876,-267.624	1/1:43:0,43,0:0:0:43,0:1448,0:-130.605,-12.9443,0,-130.605,-12.9443,-130.605	1/1:40:0,40,0:0:0:40,0:1399,0:-126.206,-12.0412,0,-126.206,-12.0412,-126.206	1/1:79:0,79,0:0:0:79,0:2791,0:-251.432,-23.7814,0,-251.432,-23.7814,-251.432	1/1:65:0,65,0:0:0:65,0:2284,0:-205.823,-19.567,0,-205.823,-19.567,-205.823	1/1:47:0,47,0:0:0:47,0:1644,0:-148.245,-14.1484,0,-148.245,-14.1484,-148.245	1/1:56:0,56,0:0:0:56,0:1979,0:-178.381,-16.8577,0,-178.381,-16.8577,-178.381	1/1:48:0,48,0:0:0:48,0:1665,0:-150.135,-14.4494,0,-150.135,-14.4494,-150.135	1/1:22:0,22,0:0:0:22,0:766,0:-69.2581,-6.62266,0,-69.2581,-6.62266,-69.2581	1/1:22:0,22,0:0:0:22,0:752,0:-67.994,-6.62266,0,-67.994,-6.62266,-67.994	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:202:0,202,0:0:0:202,0:7058,0:-635.111,-60.8081,0,-635.111,-60.8081,-635.111	1/1:89:0,89,0:0:0:89,0:3133,0:-282.198,-26.7917,0,-282.198,-26.7917,-282.198	1/1:87:0,87,0:0:0:87,0:3014,0:-271.489,-26.1896,0,-271.489,-26.1896,-271.489	1/1:46:0,46,0:0:0:46,0:1643,0:-148.158,-13.8474,0,-148.158,-13.8474,-148.158	1/2:57:0,36,20:0:0:36,20:1262,716:-161.175,-58.4828,-47.6457,-102.791,0,-96.7706	1/1:93:0,93,0:0:0:93,0:3237,0:-291.554,-27.9958,0,-291.554,-27.9958,-291.554	1/2:159:0,91,68:0:0:91,68:3168,2403:-453.646,-196.045,-168.651,-257.953,0,-237.483	1/1:171:0,171,0:0:0:171,0:6021,0:-542.003,-51.4761,0,-542.003,-51.4761,-542.003	1/2:24:0,14,10:0:0:14,10:504,360:-70.8578,-29.734,-25.5196,-41.4837,0,-38.4734	1/1:154:0,154,0:0:0:154,0:5416,0:-487.57,-46.3586,0,-487.57,-46.3586,-487.57	1/1:92:0,90,2:0:0:90,2:3164,72:-284.626,-27.0927,0,-278.751,-20.858,-278.149	1/2:69:0,34,35:0:0:34,35:1203,1252:-200.425,-102.441,-92.2058,-98.34,0,-87.804	1/2:9:0,5,4:0:0:5,4:176,144:-26.4331,-12.1095,-10.6043,-14.6799,0,-13.4757	1/1:20:0,20,0:0:0:20,0:691,0:-62.507,-6.0206,0,-62.507,-6.0206,-62.507	.:.:.:.:.:.:.:.	1/1:10:0,10,0:0:0:10,0:344,0:-31.2921,-3.0103,0,-31.2921,-3.0103,-31.2921	1/2:20:0,18,2:0:0:18,2:648,72:-59.1,-6.23466,-0.816122,-53.2251,0,-52.6231	1/1:166:0,166,0:0:0:166,0:5825,0:-524.365,-49.971,0,-524.365,-49.971,-524.365	1/1:103:0,103,0:0:0:103,0:3649,0:-328.613,-31.0061,0,-328.613,-31.0061,-328.613	1/1:23:0,23,0:0:0:23,0:820,0:-74.1225,-6.92369,0,-74.1225,-6.92369,-74.1225	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:82:0,51,31:0:0:51,31:1788,1116:-236.911,-91.4198,-76.0672,-145.847,0,-136.515	1/2:24:0,14,10:0:0:14,10:504,352:-69.8746,-28.7444,-24.53,-41.4837,0,-38.4734	1/1:135:0,135,0:0:0:135,0:4742,0:-426.942,-40.6391,0,-426.942,-40.6391,-426.942	1/1:28:0,28,0:0:0:28,0:972,0:-87.7892,-8.42884,0,-87.7892,-8.42884,-87.7892	1/1:49:0,49,0:0:0:49,0:1743,0:-157.152,-14.7505,0,-157.152,-14.7505,-157.152	1/1:107:0,107,0:0:0:107,0:3723,0:-335.273,-32.2102,0,-335.273,-32.2102,-335.273	1/1:87:0,87,0:0:0:87,0:3025,0:-272.479,-26.1896,0,-272.479,-26.1896,-272.479	1/2:107:0,48,59:0:0:48,59:1681,2091:-307.443,-170.671,-156.221,-137.124,0,-119.363	1/1:96:0,96,0:0:0:96,0:3407,0:-306.846,-28.8989,0,-306.846,-28.8989,-306.846	1/1:53:0,53,0:0:0:53,0:1892,0:-170.548,-15.9546,0,-170.548,-15.9546,-170.548	1/1:77:0,77,0:0:0:77,0:2688,0:-242.164,-23.1793,0,-242.164,-23.1793,-242.164	1/1:6:0,6,0:0:0:6,0:201,0:-18.417,-1.80618,0,-18.417,-1.80618,-18.417	1/2:95:0,62,33:0:0:62,33:2175,1180:-273.572,-96.5741,-77.9102,-177.353,0,-167.419	1/1:24:0,24,0:0:0:24,0:851,0:-76.9095,-7.22472,0,-76.9095,-7.22472,-76.9095	1/2:11:0,7,4:0:0:7,4:241,140:-31.3102,-11.7405,-9.63325,-19.9175,0,-18.7134	1/2:87:0,33,54:0:0:33,54:1153,1909:-249.615,-155.825,-145.891,-94.1402,0,-77.8846	1/1:44:0,43,1:0:0:43,1:1473,32:-132.538,-12.9443,0,-129.96,-10.046,-129.659	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:15:0,15,0:0:0:15,0:508,0:-46.04,-4.51545,0,-46.04,-4.51545,-46.04	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chr08	18734574	.	G	A	48724.1	PASS	AB=0.472747;ABP=32.7182;AC=22;AF=0.117021;AN=188;AO=2209;CIGAR=1X;DP=21069;DPB=21069;DPRA=1.17267;EPP=4791.11;EPPR=40887.5;GTI=0;LEN=1;MEANALT=1.12121;MQM=59.9484;MQMR=59.9773;NS=94;NUMALT=1;ODDS=16.6355;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78616;QR=668935;RO=18844;RPL=965;RPP=79.5289;RPPR=889.746;RPR=1244;RUN=1;SAF=964;SAP=80.6299;SAR=1245;SRF=8031;SRP=894.868;SRR=10813;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:67:67,0:67:2373:0:0:0,-20.169,-213.827	0/0:331:331,0:331:11784:0:0:0,-99.6409,-1060.06	0/0:465:464,1:464:16555:1:32:0,-136.78,-1486.41	0/0:490:490,0:490:17423:0:0:0,-147.505,-1567.7	0/0:192:186,5:186:6609:5:180:0,-41.3045,-578.34	0/0:80:80,0:80:2826:0:0:0,-24.0824,-254.58	0/0:250:250,0:250:8896:0:0:0,-75.2575,-800.626	0/0:435:435,0:435:15377:0:0:0,-130.948,-1383.66	0/0:211:211,0:211:7415:0:0:0,-63.5173,-667.357	0/0:199:199,0:199:7054:0:0:0,-59.905,-634.924	0/0:194:194,0:194:6838:0:0:0,-58.3998,-615.495	0/0:203:203,0:203:7203:0:0:0,-61.1091,-648.138	0/0:142:142,0:142:5058:0:0:0,-42.7463,-455.367	0/0:187:187,0:187:6576:0:0:0,-56.2926,-591.932	0/0:107:107,0:107:3824:0:0:0,-32.2102,-344.358	0/0:160:160,0:160:5655:0:0:0,-48.1648,-509.073	0/0:147:147,0:147:5222:0:0:0,-44.2514,-470.119	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:86:86,0:86:3060:0:0:0,-25.8886,-275.631	0/0:522:522,0:522:18519:0:0:0,-157.138,-1666.3	0/0:243:243,0:243:8597:0:0:0,-73.1503,-773.736	0/0:172:172,0:172:6131:0:0:0,-51.7772,-551.893	0/0:136:136,0:136:4824:0:0:0,-40.9401,-434.309	0/1:240:164,76:164:5776:76:2722:-172.974,0,-447.714	0/0:200:200,0:200:7079:0:0:0,-60.206,-637.173	0/1:557:289,268:289:10259:268:9487:-686.073,0,-755.564	0/0:597:597,0:597:21306:0:0:0,-179.715,-1917	0/1:84:42,42:42:1504:42:1499:-109.914,0,-110.368	0/0:597:596,0:596:21153:0:0:0,-179.414,-1902.89	0/0:209:195,14:195:6918:14:504:0,-17.2172,-576.991	0/1:237:114,123:114:3991:123:4339:-319.343,0,-288.036	0/1:21:13,8:13:464:8:279:-19.1259,0,-35.7759	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:13:7,6:7:252:6:207:-15.0535,0,-19.1156	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	0/1:46:27,19:27:972:19:684:-48.0429,0,-73.9505	0/0:410:410,0:410:14553:0:0:0,-123.422,-1309.51	0/0:237:237,0:237:8430:0:0:0,-71.3441,-757.217	0/0:148:148,0:148:5260:0:0:0,-44.5524,-473.53	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:332:175,157:175:6184:157:5592:-403.439,0,-456.588	0/1:94:46,48:46:1643:48:1712:-126.069,0,-119.861	0/0:410:410,0:410:14560:0:0:0,-123.422,-1310.15	0/0:170:170,0:170:6046:0:0:0,-51.1751,-544.24	0/0:147:147,0:147:5248:0:0:0,-44.2514,-472.459	0/0:128:126,0:126:4452:0:0:0,-37.9298,-400.494	0/0:335:335,0:335:11891:0:0:0,-100.845,-1070.05	0/1:428:218,210:218:7780:210:7444:-541.156,0,-571.388	0/0:251:251,0:251:8862:0:0:0,-75.5585,-797.571	0/0:353:352,1:352:12471:1:36:0,-102.665,-1118.57	0/0:399:398,0:398:14146:0:0:0,-119.81,-1272.55	0/0:48:48,0:48:1684:0:0:0,-14.4494,-151.844	0/1:373:207,166:207:7379:166:5899:-418.738,0,-551.874	0/0:117:116,0:116:4148:0:0:0,-34.9195,-373.144	0/1:28:14,14:14:500:14:504:-37.2693,0,-36.9073	0/1:307:169,138:169:6016:138:4943:-352.603,0,-449.13	0/0:86:86,0:86:3048:0:0:0,-25.8886,-274.549	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:37:37,0:37:1304:0:0:0,-11.1381,-117.659	0/0:168:168,0:168:5957:0:0:0,-50.573,-536.108	0/0:246:245,1:245:8665:1:36:0,-70.4551,-776.224	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:389:389,0:389:13874:0:0:0,-117.101,-1248.44	0/0:524:520,3:520:18406:3:108:0,-147.723,-1646.06	0/1:169:114,55:114:4073:55:1964:-126.161,0,-315.881	0/0:251:250,0:250:8910:0:0:0,-75.2575,-801.253	0/0:343:341,2:341:12066:2:48:0,-98.6935,-1081.24	0/0:266:264,2:264:9426:2:72:0,-73.2373,-841.464	0/0:134:134,0:134:4754:0:0:0,-40.338,-428.014	0/0:206:204,0:204:7247:0:0:0,-61.4101,-651.925	0/0:162:162,0:162:5754:0:0:0,-48.7669,-517.977	0/1:58:41,17:41:1468:17:595:-36.4169,0,-114.956	0/0:253:252,0:252:8953:0:0:0,-75.8596,-805.544	0/1:262:129,133:129:4571:133:4776:-351.125,0,-332.598	0/0:309:309,0:309:10934:0:0:0,-93.0183,-983.959	0/0:442:441,0:441:15750:0:0:0,-132.754,-1416.84	0/1:332:183,149:183:6493:149:5284:-375.754,0,-484.513	0/0:368:366,1:366:12946:1:36:0,-107.24,-1161.18	0/0:38:38,0:38:1348:0:0:0,-11.4391,-121.62	0/0:322:320,1:320:11330:1:36:0,-93.3922,-1015.99	0/1:223:116,107:116:4115:107:3813:-276.237,0,-303.408	0/0:581:581,0:581:20612:0:0:0,-174.898,-1854.09	0/0:152:152,0:152:5370:0:0:0,-45.7566,-483.436	0/0:159:158,0:158:5610:0:0:0,-47.5627,-504.664	0/0:134:134,0:134:4704:0:0:0,-40.338,-423.525	0/0:237:237,0:237:8403:0:0:0,-71.3441,-756.278	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.623	0/1:167:81,86:81:2861:86:3082:-227.334,0,-207.453	0/1:179:94,85:94:3350:85:3025:-218.595,0,-247.832	0/0:112:111,0:111:3928:0:0:0,-33.4143,-353.355	0/1:275:130,145:130:4586:145:5186:-384.091,0,-330.125	0/1:180:55,125:55:1972:125:4456:-347.018,0,-123.569	0/0:285:284,1:284:10140:1:36:0,-82.1953,-908.848	0/0:232:232,0:232:8238:0:0:0,-69.839,-741.432
chr08	18888485	.	T	A	461502	PASS	AB=0.470722;ABP=32.3821;AC=166;AF=0.882979;AN=188;AO=16669;CIGAR=1X;DP=18806;DPB=18806;DPRA=0;EPP=36199.3;EPPR=4610.87;GTI=0;LEN=1;MEANALT=1.10638;MQM=59.8301;MQMR=59.9595;NS=94;NUMALT=1;ODDS=17.3244;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=583523;QR=75636;RO=2122;RPL=8518;RPP=20.5563;RPPR=33.284;RPR=8151;RUN=1;SAF=8518;SAP=20.5563;SAR=8151;SRF=975;SRP=33.284;SRR=1147;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:103:0,103:0:0:103:3594:-323.574,-31.0061,0	1/1:160:0,160:0:0:160:5508:-495.797,-48.1648,0	1/1:404:3,401:3:108:401:14059:-1254.6,-111.541,0	1/1:445:0,445:0:0:445:15613:-1403.96,-133.958,0	1/1:171:1,170:1:36:170:5974:-534.016,-47.8779,0	1/1:70:0,70:0:0:70:2380:-214.425,-21.0721,0	1/1:118:1,117:1:36:117:4122:-367.492,-31.9323,0	1/1:312:0,312:0:0:312:10984:-988.419,-93.9214,0	1/1:255:1,254:1:36:254:8831:-791.145,-73.1712,0	1/1:189:0,189:0:0:189:6698:-602.891,-56.8947,0	1/1:101:0,101:0:0:101:3554:-320.05,-30.404,0	1/1:255:0,255:0:0:255:8948:-805.278,-76.7627,0	1/1:168:0,168:0:0:168:5881:-529.304,-50.573,0	1/1:134:1,133:1:36:133:4625:-412.815,-36.7397,0	1/1:147:0,147:0:0:147:5149:-463.549,-44.2514,0	1/1:159:2,156:2:68:156:5442:-483.313,-41.4582,0	1/1:93:0,93:0:0:93:3216:-289.653,-27.9958,0	1/1:80:0,80:0:0:80:2792:-251.52,-24.0824,0	1/1:68:0,68:0:0:68:2373:-213.829,-20.47,0	1/1:579:1,578:1:32:578:20068:-1802.44,-171.097,0	1/1:344:0,344:0:0:344:12102:-1088.97,-103.554,0	1/1:262:0,262:0:0:262:9188:-826.897,-78.8699,0	1/1:241:0,241:0:0:241:8432:-758.893,-72.5482,0	0/1:166:65,101:65:2315:101:3521:-267.121,0,-158.639	1/1:167:0,167:0:0:167:5857:-527.247,-50.272,0	0/1:396:195,200:195:6959:200:7059:-516.108,0,-507.108	1/1:447:1,444:1:36:444:15561:-1396.54,-130.72,0	0/1:80:41,39:41:1476:39:1375:-99.9655,0,-109.054	1/1:567:1,566:1:36:566:19834:-1781.02,-167.086,0	1/1:267:10,257:10:360:257:9031:-780.013,-47.6307,0	0/1:266:141,125:141:5029:125:4397:-315.833,0,-372.683	0/1:26:14,12:14:491:12:423:-30.5783,0,-36.6943	1/1:70:0,70:0:0:70:2472:-222.677,-21.0721,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:22:9,13:9:324:13:464:-35.4666,0,-22.8832	1/1:429:0,429:0:0:429:15034:-1352.77,-129.142,0	1/1:164:0,164:0:0:164:5736:-516.363,-49.3689,0	1/1:120:2,118:2:72:118:4130:-365.011,-29.2869,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	0/1:229:115,114:115:4073:114:4011:-292.227,0,-297.82	0/1:51:28,23:28:1008:23:807:-57.5966,0,-75.6838	1/1:501:0,498:0:0:498:17517:-1575.84,-149.913,0	1/1:115:0,115:0:0:115:4053:-364.946,-34.6185,0	1/1:128:0,128:0:0:128:4436:-399.417,-38.5318,0	1/1:236:0,236:0:0:236:8260:-743.411,-71.0431,0	1/1:263:0,263:0:0:263:9162:-824.393,-79.1709,0	0/1:438:236,202:236:8415:202:7138:-510.601,0,-625.502	1/1:257:0,257:0:0:257:9021:-811.871,-77.3647,0	1/1:214:0,213:0:0:213:7477:-672.451,-64.1194,0	1/1:232:0,232:0:0:232:8029:-722.611,-69.839,0	1/1:27:0,27:0:0:27:963:-86.9859,-8.12781,0	0/1:295:164,131:164:5847:131:4626:-327.689,0,-437.538	1/1:102:0,102:0:0:102:3532:-318.09,-30.7051,0	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:312:197,115:197:7032:115:4032:-269.151,0,-539.021	1/1:112:0,112:0:0:112:3902:-351.372,-33.7154,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:56:0,56:0:0:56:1934:-174.331,-16.8577,0	1/1:170:2,168:2:72:168:5922:-525.315,-44.3384,0	1/1:196:1,195:1:36:195:6862:-614.018,-55.4036,0	1/1:22:0,22:0:0:22:755:-68.2658,-6.62266,0	1/1:318:0,318:0:0:318:11102:-999.087,-95.7275,0	1/1:363:4,359:4:140:359:12490:-1111.02,-96.3293,0	0/1:136:63,73:63:2236:73:2506:-184.848,0,-160.558	1/1:181:0,181:0:0:181:6347:-571.329,-54.4864,0	1/1:240:0,240:0:0:240:8495:-764.551,-72.2472,0	1/1:214:1,213:1:36:213:7356:-657.643,-60.8221,0	1/1:94:0,93:0:0:93:3283:-295.312,-27.9958,0	1/1:103:0,103:0:0:103:3572:-321.68,-31.0061,0	1/1:91:1,90:1:36:90:3131:-277.563,-23.7955,0	0/1:69:36,33:36:1288:33:1165:-84.3816,0,-95.4525	1/1:171:0,168:0:0:168:5955:-535.592,-50.573,0	0/1:246:147,99:147:5256:99:3486:-239.871,0,-399.124	1/1:499:0,499:0:0:499:17429:-1568.08,-150.214,0	1/1:361:0,360:0:0:360:12580:-1131.77,-108.371,0	0/1:308:163,145:163:5852:145:5128:-368.932,0,-434.072	1/1:197:0,197:0:0:197:6876:-618.906,-59.3029,0	1/1:31:0,31:0:0:31:1081:-97.5829,-9.33193,0	1/1:257:0,257:0:0:257:9038:-813.393,-77.3647,0	0/1:171:79,92:79:2827:92:3177:-234.674,0,-203.178	1/1:672:0,672:0:0:672:23640:-2126.93,-202.292,0	1/1:124:1,123:1:36:123:4301:-383.754,-33.825,0	1/1:171:1,170:1:36:170:5987:-535.241,-47.8779,0	1/1:99:0,99:0:0:99:3436:-309.457,-29.802,0	1/1:273:1,272:1:36:272:9465:-848.205,-78.5829,0	1/1:42:0,42:0:0:42:1471:-132.676,-12.6433,0	0/1:186:87,99:87:3063:99:3463:-255.891,0,-219.908	0/1:163:84,78:84:2972:78:2715:-195.506,0,-218.625	1/1:74:0,73:0:0:73:2564:-230.645,-21.9752,0	0/1:186:91,95:91:3256:95:3334:-244.276,0,-237.269	0/1:176:117,59:117:4129:59:2014:-128.546,0,-318.114	1/1:246:0,246:0:0:246:8546:-769.127,-74.0534,0	1/1:278:0,278:0:0:278:9708:-873.691,-83.6863,0
chr08	18888536	.	ACCA	GCCG,GCCA	313120	PASS	AB=0.509997,0.489108;ABP=5.9192,6.46353;AC=166,22;AF=0.882979,0.117021;AN=188;AO=12453,1651;CIGAR=1X2M1X,1X3M;DP=14114;DPB=14122.5;DPRA=0,1.13228;EPP=27044.4,3588.11;EPPR=0;GTI=0;LEN=4,1;MEANALT=1.38298,2.10345;MQM=59.9847,59.9855;MQMR=0;NS=94;NUMALT=2;ODDS=13.6987;PAIRED=0,0;PAIREDR=0;PAO=34,0;PQA=1158,0;PQR=0;PRO=0;QA=442366,59032;QR=0;RO=0;RPL=0,0;RPP=27044.4,3588.11;RPPR=0;RPR=12453,1651;RUN=1,1;SAF=12453,1651;SAP=27044.4,3588.11;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:102:0,102,0:0:0:102,0:3633,0:-326.829,-30.7051,0,-326.829,-30.7051,-326.829	1/1:105:0,105,0:0:0:105,0:3718,0:-334.825,-31.6082,0,-334.825,-31.6082,-334.825	1/1:324:0,324,0:0:0:324,0:11469,0:-1032.1,-97.5337,0,-1032.1,-97.5337,-1032.1	1/1:391:0,390,1:0:0:390,1:13876,36:-1248.27,-117.402,0,-1245.33,-114.458,-1245.03	1/1:64:0,64,0:0:0:64,0:2268,0:-204.022,-19.2659,0,-204.022,-19.2659,-204.022	1/1:50:0,50,0:0:0:50,0:1771,0:-159.459,-15.0515,0,-159.459,-15.0515,-159.459	1/1:107:0,105,1:0:0:105,1:3679,36:-330.957,-31.6082,0,-328.02,-28.6707,-327.719	1/1:217:0,217,0:0:0:217,0:7629,0:-686.297,-65.3235,0,-686.297,-65.3235,-686.297	1/1:120:0,119,1:0:0:119,1:4226,32:-380.181,-35.8226,0,-377.603,-32.9243,-377.302	1/1:88:0,88,0:0:0:88,0:3119,0:-280.937,-26.4906,0,-280.937,-26.4906,-280.937	1/1:186:0,186,0:0:0:186,0:6599,0:-593.635,-55.9916,0,-593.635,-55.9916,-593.635	1/1:130:0,130,0:0:0:130,0:4616,0:-415.605,-39.1339,0,-415.605,-39.1339,-415.605	1/1:109:0,109,0:0:0:109,0:3907,0:-351.823,-32.8123,0,-351.823,-32.8123,-351.823	1/1:124:0,124,0:0:0:124,0:4413,0:-397.344,-37.3277,0,-397.344,-37.3277,-397.344	1/1:81:0,81,0:0:0:81,0:2883,0:-259.347,-24.3834,0,-259.347,-24.3834,-259.347	1/1:83:0,83,0:0:0:83,0:2970,0:-267.533,-24.9855,0,-267.533,-24.9855,-267.533	1/1:77:0,77,0:0:0:77,0:2731,0:-246.032,-23.1793,0,-246.032,-23.1793,-246.032	1/1:35:0,35,0:0:0:35,0:1250,0:-112.805,-10.5361,0,-112.805,-10.5361,-112.805	1/1:85:0,85,0:0:0:85,0:3010,0:-271.129,-25.5876,0,-271.129,-25.5876,-271.129	1/1:220:0,220,0:0:0:220,0:7855,0:-706.618,-66.2266,0,-706.618,-66.2266,-706.618	1/1:236:0,236,0:0:0:236,0:8409,0:-756.458,-71.0431,0,-756.458,-71.0431,-756.458	1/1:192:0,192,0:0:0:192,0:6825,0:-614.323,-57.7978,0,-614.323,-57.7978,-614.323	1/1:183:0,182,0:0:0:182,0:6480,0:-582.928,-54.7875,0,-582.928,-54.7875,-582.928	1/2:86:0,43,43:0:0:43,43:1531,1529:-249.74,-124.957,-112.013,-125.138,0,-112.194	1/1:200:0,200,0:0:0:200,0:7089,0:-638.077,-60.206,0,-638.077,-60.206,-638.077	1/2:434:0,220,214:0:0:220,214:7811,7658:-1260.92,-624.472,-558.245,-636.44,0,-572.02	1/1:514:0,514,0:0:0:514,0:18263,0:-1643.27,-154.729,0,-1643.27,-154.729,-1643.27	1/2:34:0,17,17:0:0:17,17:610,608:-99.6918,-49.9345,-44.817,-50.1153,0,-44.9978	1/1:437:0,437,0:0:0:437,0:15553,0:-1399.48,-131.55,0,-1399.48,-131.55,-1399.48	1/1:124:0,122,2:0:0:122,2:4340,72:-390.418,-36.7257,0,-384.543,-30.491,-383.941	1/2:161:0,82,79:0:0:82,79:2933,2820:-469.422,-230.258,-205.574,-239.521,0,-215.739	1/2:23:0,17,6:0:0:17,6:609,216:-67.6501,-17.9843,-12.8668,-50.0251,0,-48.2189	1/1:57:0,57,0:0:0:57,0:2034,0:-183.332,-17.1587,0,-183.332,-17.1587,-183.332	1/2:15:0,8,7:0:0:8,7:286,252:-44.2404,-20.9217,-18.5135,-23.6773,0,-21.5701	1/1:36:0,36,0:0:0:36,0:1274,0:-114.961,-10.8371,0,-114.961,-10.8371,-114.961	1/2:77:0,56,21:0:0:56,21:1970,752:-222.044,-61.6846,-44.8269,-160.716,0,-154.394	1/1:219:0,219,0:0:0:219,0:7802,0:-701.851,-65.9256,0,-701.851,-65.9256,-701.851	1/1:258:0,257,0:0:0:257,0:9156,0:-823.1,-77.3647,0,-823.1,-77.3647,-823.1	1/1:96:0,96,0:0:0:96,0:3423,0:-307.924,-28.8989,0,-307.924,-28.8989,-307.924	1/1:12:0,12,0:0:0:12,0:426,0:-38.6774,-3.61236,0,-38.6774,-3.61236,-38.6774	1/2:201:0,80,121:0:0:80,121:2830,4352:-585.928,-355.428,-331.346,-230.856,0,-194.431	1/2:51:0,21,30:0:0:21,30:752,1061:-148.097,-86.7685,-80.4468,-61.6848,0,-52.6539	1/1:232:0,232,0:0:0:232,0:8242,0:-741.797,-69.839,0,-741.797,-69.839,-741.797	1/1:76:0,76,0:0:0:76,0:2712,0:-244.324,-22.8783,0,-244.324,-22.8783,-244.324	1/1:69:0,69,0:0:0:69,0:2453,0:-220.676,-20.7711,0,-220.676,-20.7711,-220.676	1/1:195:0,195,0:0:0:195,0:6914,0:-622.332,-58.7009,0,-622.332,-58.7009,-622.332	1/1:113:0,113,0:0:0:113,0:4009,0:-361,-34.0164,0,-361,-34.0164,-361	1/2:333:0,173,160:0:0:173,160:6167,5713:-968.818,-466.123,-414.044,-503.052,0,-454.887	1/1:140:0,140,0:0:0:140,0:4988,0:-449.066,-42.1442,0,-449.066,-42.1442,-449.066	1/1:271:0,271,0:0:0:271,0:9611,0:-864.953,-81.5791,0,-864.953,-81.5791,-864.953	1/1:101:0,101,0:0:0:101,0:3566,0:-321.15,-30.404,0,-321.15,-30.404,-321.15	1/1:33:0,33,0:0:0:33,0:1168,0:-105.426,-9.93399,0,-105.426,-9.93399,-105.426	1/2:201:0,86,115:0:0:86,115:3066,4132:-587.047,-337.124,-311.235,-249.96,0,-215.342	1/1:126:0,126,0:0:0:126,0:4484,0:-403.729,-37.9298,0,-403.729,-37.9298,-403.729	1/2:28:0,14,14:0:0:14,14:493,500:-81.2548,-41.1218,-36.9073,-40.4875,0,-36.2731	1/2:253:0,134,119:0:0:134,119:4759,4238:-733.545,-345.77,-305.432,-388.131,0,-352.309	1/1:81:0,81,0:0:0:81,0:2825,0:-254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chr08	18890012	.	T	C	7891.38	PASS	AB=0.481773;ABP=5.93911;AC=23;AF=0.123656;AN=186;AO=502;CIGAR=1X;DP=5015;DPB=5015;DPRA=1.00598;EPP=1093.09;EPPR=9802.87;GTI=2;LEN=1;MEANALT=1;MQM=59.9542;MQMR=59.4454;NS=93;NUMALT=1;ODDS=4.14412;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=17811;QR=161750;RO=4513;RPL=0;RPP=1093.09;RPPR=9802.87;RPR=502;RUN=1;SAF=502;SAP=1093.09;SAR=0;SRF=4513;SRP=9802.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.556	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.863	0/0:147:147,0:147:5284:0:0:0,-44.2514,-475.674	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.8842	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.459	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.659	0/0:27:27,0:27:964:0:0:0,-8.12781,-86.9705	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.769	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.073	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.023	0/0:46:46,0:46:1652:0:0:0,-13.8474,-147.65	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.603	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.551	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.137	0/0:52:52,0:52:1864:0:0:0,-15.6536,-167.29	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.685	0/0:125:125,0:125:4475:0:0:0,-37.6287,-402.883	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.135	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.293	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.017	0/1:45:21,24:21:756:24:848:-63.0933,0,-54.8045	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7654	0/1:142:73,69:73:2612:69:2456:-178.549,0,-192.424	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.018	0/1:29:18,11:18:630:11:392:-26.8902,0,-48.2866	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.945	0/0:100:98,2:98:3508:2:68:0,-23.6453,-309.409	0/1:63:27,36:27:972:36:1284:-96.8985,0,-68.7242	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:163:163,0:163:5848:0:0:0,-49.0679,-526.239	0/0:142:142,0:142:5069:0:0:0,-42.7463,-456.05	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.657	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/1:56:26,30:26:932:30:1080:-80.6556,0,-67.333	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.162	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.715	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.769	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.315	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.804	0/1:106:58,48:58:2080:48:1700:-121.376,0,-155.552	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.839	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.433	0/0:83:83,0:83:2960:0:0:0,-24.9855,-266.621	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:73:43,30:43:1540:30:1068:-74.456,0,-116.907	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1232	0/1:7:3,4:3:108:4:136:-10.4683,0,-7.96796	0/1:46:25,21:25:900:21:752:-54.1589,0,-67.456	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9457	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.558	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.867	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.144	0/0:127:123,4:123:4408:4:144:0,-24.9172,-383.45	0/1:41:21,20:21:752:20:716:-52.4255,0,-55.6576	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.505	0/0:57:56,1:56:2004:1:36:0,-13.5604,-177.023	0/0:68:68,0:68:2444:0:0:0,-20.47,-219.56	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:91:91,0:91:3241:0:0:0,-27.3937,-291.68	0/1:11:3,8:3:104:8:284:-22.592,0,-6.39148	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.483	0/1:42:23,19:23:824:19:676:-48.5247,0,-61.8319	0/0:161:161,0:161:5738:0:0:0,-48.4658,-516.329	0/0:90:90,0:90:3225:0:0:0,-27.0927,-290.351	0/1:56:25,31:25:900:31:1096:-82.0917,0,-64.4375	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.263	.:.:.:.:.:.:.:.	0/0:50:49,1:49:1764:1:36:0,-11.4532,-155.398	0/1:40:19,21:19:680:21:741:-54.9629,0,-49.488	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.232	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.429	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.9	0/0:99:99,0:99:3535:0:0:0,-29.802,-318.296	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.362	0/1:68:45,23:45:1616:23:807:-52.4791,0,-124.886	0/1:46:27,19:27:972:19:676:-47.3206,0,-73.9324	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.1455	0/1:60:34,26:34:1224:26:924:-65.4159,0,-92.3867	0/1:65:25,40:25:900:40:1387:-105.556,0,-61.7209	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2551	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.728
chr08	18890027	.	C	T	99676.9	PASS	AB=0.509785;ABP=3.86019;AC=163;AF=0.876344;AN=186;AO=4462;CIGAR=1X;DP=4982;DPB=4982;DPRA=21.8769;EPP=9674.76;EPPR=1123.51;GTI=2;LEN=1;MEANALT=1;MQM=59.4299;MQMR=59.9577;NS=93;NUMALT=1;ODDS=4.98199;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159442;QR=18490;RO=520;RPL=2;RPP=9674.76;RPPR=1123.51;RPR=4460;RUN=1;SAF=4462;SAP=9692.12;SAR=0;SRF=520;SRP=1132.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:60:0,60:0:0:60:2151:-193.817,-18.0618,0	1/1:41:0,41:0:0:41:1468:-132.381,-12.3422,0	1/1:147:0,147:0:0:147:5220:-469.93,-44.2514,0	1/1:28:0,28:0:0:28:1004:-90.6484,-8.42884,0	1/1:30:0,30:0:0:30:1076:-97.0986,-9.0309,0	1/1:51:0,51:0:0:51:1828:-164.783,-15.3525,0	1/1:25:0,25:0:0:25:896:-80.9238,-7.52575,0	1/1:52:0,52:0:0:52:1852:-166.922,-15.6536,0	1/1:61:0,61:0:0:61:2168:-195.324,-18.3628,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:51:0,51:0:0:51:1836:-165.504,-15.3525,0	1/1:46:0,46:0:0:46:1646:-147.776,-13.8474,0	1/1:66:0,66:0:0:66:2332:-210.119,-19.868,0	1/1:47:1,46:1:27:46:1652:-146.255,-11.4486,0	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	1/1:43:0,43:0:0:43:1544:-138.898,-12.9443,0	1/1:51:0,51:0:0:51:1809:-162.428,-15.3525,0	1/1:37:0,37:0:0:37:1328:-119.801,-11.1381,0	1/1:127:0,127:0:0:127:4541:-408.822,-38.2308,0	1/1:73:0,73:0:0:73:2624:-235.599,-21.9752,0	1/1:60:0,60:0:0:60:2148:-193.578,-18.0618,0	1/1:32:0,32:0:0:32:1144:-103.258,-9.63296,0	0/1:45:24,21:24:855:21:756:-54.8045,0,-63.7238	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	0/1:140:70,70:70:2491:70:2488:-181.84,0,-182.298	1/1:74:0,74:0:0:74:2645:-238.245,-22.2762,0	0/1:27:11,16:11:392:16:568:-43.3159,0,-27.4922	1/1:58:0,58:0:0:58:2075:-187,-17.4597,0	1/1:99:2,97:2:72:97:3466:-305.246,-22.9652,0	0/1:64:38,26:38:1352:26:929:-64.6208,0,-102.714	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:160:2,158:2:72:158:5650:-501.594,-41.3281,0	1/1:146:0,146:0:0:146:5218:-469.351,-43.9504,0	1/1:44:0,44:0:0:44:1564:-141.007,-13.2453,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	0/1:56:30,26:30:1080:26:929:-67.0687,0,-80.6556	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	1/1:48:0,48:0:0:48:1713:-154.221,-14.4494,0	1/1:45:0,45:0:0:45:1599:-144.184,-13.5464,0	1/1:41:0,41:0:0:41:1472:-132.769,-12.3422,0	1/1:34:0,34:0:0:34:1216:-109.744,-10.235,0	1/1:57:0,57:0:0:57:2033:-183.166,-17.1587,0	0/1:107:49,58:49:1734:58:2080:-155.251,0,-124.132	1/1:75:0,75:0:0:75:2665:-240.087,-22.5773,0	1/1:73:0,73:0:0:73:2603:-234.474,-21.9752,0	1/1:83:0,83:0:0:83:2968:-267.339,-24.9855,0	1/1:5:0,5:0:0:5:180:-16.4641,-1.50515,0	0/1:73:29,44:29:1036:44:1572:-119.786,0,-71.5787	1/1:20:0,20:0:0:20:712:-64.4011,-6.0206,0	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:47:22,25:22:788:25:896:-66.7943,0,-57.0964	1/1:15:0,15:0:0:15:536:-48.5463,-4.51545,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:89:0,89:0:0:89:3196:-287.673,-26.7917,0	1/1:68:0,68:0:0:68:2417:-217.589,-20.47,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:73:0,73:0:0:73:2620:-235.909,-21.9752,0	1/1:123:4,119:4:144:119:4246:-368.985,-23.7131,0	0/1:42:21,21:21:752:21:756:-55.7147,0,-55.363	1/1:55:0,55:0:0:55:1958:-176.353,-16.5567,0	1/1:57:1,56:1:36:56:2008:-177.375,-13.5604,0	1/1:67:0,67:0:0:67:2378:-214.207,-20.169,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:84:0,84:0:0:84:3012:-271.08,-25.2865,0	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	1/1:71:0,71:0:0:71:2544:-228.278,-21.3731,0	0/1:41:19,22:19:684:22:788:-58.9026,0,-49.5481	1/1:160:0,160:0:0:160:5679:-510.904,-48.1648,0	1/1:88:0,88:0:0:88:3164:-284.865,-26.4906,0	0/1:57:30,27:30:1068:27:972:-70.5958,0,-79.2734	1/1:52:0,52:0:0:52:1858:-167.485,-15.6536,0	.:.:.:.:.:.:.:.	1/1:51:1,50:1:36:50:1787:-157.469,-11.7543,0	0/1:42:23,19:23:806:19:680:-48.8859,0,-60.213	1/1:91:2,89:2:72:89:3192:-280.635,-20.557,0	1/1:78:1,77:1:36:77:2756:-244.677,-19.8821,0	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	1/1:66:0,66:0:0:66:2350:-211.69,-19.868,0	1/1:97:0,97:0:0:97:3445:-310.236,-29.1999,0	1/1:29:0,29:0:0:29:1044:-94.2408,-8.72987,0	0/1:68:24,44:24:852:44:1576:-121.467,0,-56.5303	0/1:46:20,26:20:698:26:936:-70.6939,0,-49.2941	1/1:22:0,22:0:0:22:792:-71.5064,-6.62266,0	0/1:61:27,34:27:960:34:1220:-91.7254,0,-68.3534	0/1:69:44,25:44:1555:25:896:-60.1561,0,-119.468	1/1:28:0,28:0:0:28:1000:-90.2972,-8.42884,0	1/1:63:0,63:0:0:63:2251:-202.843,-18.9649,0
chr08	18890032	.	CA	CG	99498.9	PASS	AB=0.504845;ABP=3.22071;AC=163;AF=0.876344;AN=186;AO=4453;CIGAR=1M1X;DP=4987;DPB=4987;DPRA=21.8989;EPP=9542.73;EPPR=1123.64;GTI=2;LEN=1;MEANALT=1.06593;MQM=59.4588;MQMR=59.9545;NS=93;NUMALT=1;ODDS=5.50092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158322;QR=18607;RO=528;RPL=15;RPP=9542.73;RPPR=1123.64;RPR=4438;RUN=1;SAF=4453;SAP=9672.58;SAR=0;SRF=528;SRP=1149.55;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:63:0,63:0:0:63:2235:-201.354,-18.9649,0	1/1:39:0,39:0:0:39:1396:-125.904,-11.7402,0	1/1:146:1,145:1:36:145:5143:-459.403,-40.3521,0	1/1:28:0,28:0:0:28:996:-89.9296,-8.42884,0	1/1:30:0,30:0:0:30:1075:-97.0122,-9.0309,0	1/1:52:0,51:0:0:51:1796:-161.551,-15.3525,0	1/1:27:0,27:0:0:27:940:-84.8458,-8.12781,0	1/1:51:0,51:0:0:51:1805:-162.697,-15.3525,0	1/1:63:0,63:0:0:63:2241:-201.841,-18.9649,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:51:0,51:0:0:51:1801:-162.353,-15.3525,0	1/1:46:0,46:0:0:46:1625:-145.959,-13.8474,0	1/1:65:0,65:0:0:65:2336:-210.477,-19.567,0	1/1:46:1,45:1:36:45:1593:-140.044,-10.2491,0	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	1/1:44:0,44:0:0:44:1569:-141.145,-13.2453,0	1/1:52:0,52:0:0:52:1820:-163.875,-15.6536,0	1/1:37:0,37:0:0:37:1310:-118.179,-11.1381,0	1/1:124:0,124:0:0:124:4444:-400.096,-37.3277,0	1/1:72:0,72:0:0:72:2556:-230.268,-21.6742,0	1/1:59:0,59:0:0:59:2111:-190.245,-17.7608,0	1/1:31:0,31:0:0:31:1095:-98.848,-9.33193,0	0/1:45:24,21:24:857:21:743:-53.6306,0,-63.9049	1/1:20:0,20:0:0:20:720:-65.1264,-6.0206,0	0/1:143:72,71:72:2527:71:2492:-181.425,0,-184.633	1/1:76:0,76:0:0:76:2722:-245.173,-22.8783,0	0/1:28:12,16:12:430:16:563:-42.5621,0,-30.6113	1/1:58:0,57:0:0:57:2019:-181.529,-17.1587,0	1/1:101:2,99:2:70:99:3539:-311.968,-23.7567,0	0/1:65:38,27:38:1349:27:965:-67.5583,0,-102.143	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891	1/1:161:0,160:0:0:160:5719:-514.413,-48.1648,0	1/1:143:0,143:0:0:143:5078:-456.935,-43.0473,0	1/1:45:0,45:0:0:45:1586:-142.984,-13.5464,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	0/1:55:30,25:30:1076:25:881:-63.0492,0,-80.5964	0/1:19:9,10:9:324:10:351:-26.2071,0,-23.7863	1/1:46:0,46:0:0:46:1646:-148.151,-13.8474,0	1/1:44:0,44:0:0:44:1572:-141.767,-13.2453,0	1/1:41:0,41:0:0:41:1467:-132.32,-12.3422,0	1/1:34:0,34:0:0:34:1212:-109.384,-10.235,0	1/1:55:0,55:0:0:55:1945:-175.265,-16.5567,0	0/1:106:48,58:48:1681:58:2068:-154.476,0,-119.663	1/1:73:0,73:0:0:73:2599:-234.15,-21.9752,0	1/1:74:0,74:0:0:74:2648:-238.534,-22.2762,0	1/1:81:0,81:0:0:81:2896:-260.865,-24.3834,0	1/1:5:0,5:0:0:5:180:-16.4641,-1.50515,0	0/1:73:32,41:32:1128:41:1463:-109.98,0,-79.852	1/1:19:0,19:0:0:19:680:-61.5283,-5.71957,0	0/1:7:4,3:4:129:3:108:-7.96796,0,-9.82155	0/1:47:22,25:22:777:25:896:-66.7943,0,-56.103	1/1:14:0,14:0:0:14:492:-44.5838,-4.21442,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:87:0,87:0:0:87:3110:-279.939,-26.1896,0	1/1:68:1,67:1:36:67:2387:-211.348,-16.8718,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:72:0,71:0:0:71:2528:-227.404,-21.3731,0	1/1:127:4,123:4:142:123:4374:-380.684,-25.1016,0	0/1:43:22,21:22:766:21:748:-54.6945,0,-56.3131	1/1:51:0,51:0:0:51:1798:-161.965,-15.3525,0	1/1:58:1,57:1:36:57:2036:-179.892,-13.8615,0	1/1:69:0,69:0:0:69:2437:-219.192,-20.7711,0	1/1:13:0,13:0:0:13:459:-41.6441,-3.91339,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:87:0,87:0:0:87:3102:-279.297,-26.1896,0	0/1:12:8,4:8:261:4:144:-9.70126,0,-20.1953	1/1:70:1,68:1:36:68:2420:-214.391,-17.5316,0	0/1:44:20,24:20:712:24:860:-64.4683,0,-51.1618	1/1:159:0,159:0:0:159:5638:-507.473,-47.8638,0	1/1:88:0,87:0:0:87:3091:-278.011,-26.1896,0	0/1:59:32,27:32:1127:27:958:-68.7447,0,-83.9763	1/1:52:0,52:0:0:52:1850:-166.77,-15.6536,0	.:.:.:.:.:.:.:.	1/1:49:1,48:1:25:48:1712:-151.823,-12.2506,0	0/1:40:23,17:23:824:17:604:-42.6494,0,-62.4327	1/1:89:0,89:0:0:89:3149:-283.616,-26.7917,0	1/1:77:0,77:0:0:77:2748:-247.559,-23.1793,0	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	1/1:65:0,65:0:0:65:2302:-207.407,-19.567,0	1/1:98:0,98:0:0:98:3456:-311.225,-29.5009,0	1/1:31:0,31:0:0:31:1108:-99.997,-9.33193,0	0/1:69:24,45:24:852:45:1576:-121.158,0,-56.2292	0/1:47:20,27:20:702:27:968:-73.2708,0,-49.3544	1/1:23:0,23:0:0:23:807:-72.9023,-6.92369,0	0/1:61:27,34:27:940:34:1212:-91.0055,0,-66.5496	0/1:69:44,25:44:1550:25:896:-60.1561,0,-119.018	1/1:30:0,30:0:0:30:1047:-94.521,-9.0309,0	1/1:66:0,66:0:0:66:2330:-209.95,-19.868,0
chr08	19866206	.	TTA	ATG,ATA	82912.3	PASS	AB=0.408543,0.584885;ABP=69.3413,60.1512;AC=158,22;AF=0.877778,0.122222;AN=180;AO=3283,573;CIGAR=1X1M1X,1X2M;DP=3881;DPB=3881;DPRA=0,1.14976;EPP=7131.95,1247.26;EPPR=0;GTI=2;LEN=3,1;MEANALT=1.53333,2.24;MQM=59.9275,58.4346;MQMR=0;NS=90;NUMALT=2;ODDS=1.29702;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=114090,20389;QR=0;RO=0;RPL=0,0;RPP=7131.95,1247.26;RPPR=0;RPR=3283,573;RUN=1,1;SAF=0,0;SAP=7131.95,1247.26;SAR=3283,573;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8,0:0:0:8,0:285,0:-25.9944,-2.40824,0,-25.9944,-2.40824,-25.9944	1/1:40:0,39,0:0:0:39,0:1357,0:-122.066,-11.7402,0,-122.066,-11.7402,-122.066	1/1:41:0,41,0:0:0:41,0:1403,0:-126.559,-12.3422,0,-126.559,-12.3422,-126.559	1/1:124:0,122,0:0:0:122,0:4262,0:-383.501,-36.7257,0,-383.501,-36.7257,-383.501	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:5:0,5,0:0:0:5,0:175,0:-16.0934,-1.50515,0,-16.0934,-1.50515,-16.0934	1/1:19:0,19,0:0:0:19,0:653,0:-59.0704,-5.71957,0,-59.0704,-5.71957,-59.0704	1/1:36:0,36,0:0:0:36,0:1252,0:-112.979,-10.8371,0,-112.979,-10.8371,-112.979	1/2:20:0,18,2:0:0:18,2:630,72:-57.4806,-6.23275,-0.814211,-51.6065,0,-51.0045	1/1:45:0,44,0:0:0:44,0:1518,0:-136.548,-13.2453,0,-136.548,-13.2453,-136.548	1/1:18:0,18,0:0:0:18,0:626,0:-56.6639,-5.41854,0,-56.6639,-5.41854,-56.6639	1/1:41:0,41,0:0:0:41,0:1435,0:-129.446,-12.3422,0,-129.446,-12.3422,-129.446	1/1:29:0,28,1:0:0:28,1:988,36:-88.8741,-8.42884,0,-85.9364,-5.1316,-85.6354	1/1:19:0,19,0:0:0:19,0:663,0:-59.9936,-5.71957,0,-59.9936,-5.71957,-59.9936	1/1:24:0,24,0:0:0:24,0:823,0:-74.3828,-7.22472,0,-74.3828,-7.22472,-74.3828	1/1:24:0,24,0:0:0:24,0:849,0:-76.7301,-7.22472,0,-76.7301,-7.22472,-76.7301	1/1:17:0,17,0:0:0:17,0:593,0:-53.6964,-5.11751,0,-53.6964,-5.11751,-53.6964	1/1:15:0,14,0:0:0:14,0:482,0:-43.4223,-4.21442,0,-43.4223,-4.21442,-43.4223	1/1:8:0,8,0:0:0:8,0:274,0:-24.9926,-2.40824,0,-24.9926,-2.40824,-24.9926	1/1:65:0,65,0:0:0:65,0:2262,0:-203.84,-19.567,0,-203.84,-19.567,-203.84	1/1:84:0,83,0:0:0:83,0:2858,0:-257.178,-24.9855,0,-257.178,-24.9855,-257.178	1/1:20:0,20,0:0:0:20,0:698,0:-63.142,-6.0206,0,-63.142,-6.0206,-63.142	1/1:50:0,50,0:0:0:50,0:1715,0:-154.63,-15.0515,0,-154.63,-15.0515,-154.63	1/2:40:0,15,25:0:0:15,25:528,876:-114.409,-71.4247,-66.9093,-43.3352,0,-35.8095	1/1:16:0,16,0:0:0:16,0:559,0:-50.6372,-4.81648,0,-50.6372,-4.81648,-50.6372	1/2:184:0,57,123:0:0:57,123:1933,4390:-514.265,-357.529,-340.37,-156.742,0,-119.715	1/1:86:0,86,0:0:0:86,0:2976,0:-268.073,-25.8886,0,-268.073,-25.8886,-268.073	1/2:12:0,3,9:0:0:3,9:108,324:-35.607,-26.7948,-25.8917,-9.17208,0,-6.46281	1/1:130:0,129,0:0:0:129,0:4524,0:-406.976,-38.8329,0,-406.976,-38.8329,-406.976	1/1:54:0,50,4:0:0:50,4:1742,144:-156.698,-15.0515,0,-144.949,-2.94293,-143.744	1/2:55:0,35,20:0:0:35,20:1235,708:-158.587,-58.0225,-47.4865,-100.917,0,-94.8968	1/2:12:0,7,5:0:0:7,5:242,180:-34.7014,-15.0451,-12.9379,-20.0102,0,-18.505	1/1:8:0,8,0:0:0:8,0:278,0:-25.3568,-2.40824,0,-25.3568,-2.40824,-25.3568	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/2:7:0,5,2:0:0:5,2:178,68:-20.3734,-5.85431,-4.34916,-14.8635,0,-14.2614	1/1:103:0,103,0:0:0:103,0:3560,0:-320.599,-31.0061,0,-320.599,-31.0061,-320.599	1/1:41:0,41,0:0:0:41,0:1405,0:-126.742,-12.3422,0,-126.742,-12.3422,-126.742	1/1:15:0,14,0:0:0:14,0:493,0:-44.4832,-4.21442,0,-44.4832,-4.21442,-44.4832	.:.:.:.:.:.:.:.	1/2:73:0,26,47:0:0:26,47:881,1656:-206.19,-134.762,-126.935,-71.7713,0,-57.6229	1/2:10:0,2,8:0:0:2,8:72,288:-29.6609,-23.7859,-23.1838,-6.23466,0,-3.82642	1/1:19:0,19,0:0:0:19,0:660,0:-59.7222,-5.71957,0,-59.7222,-5.71957,-59.7222	1/1:18:0,18,0:0:0:18,0:615,0:-55.6695,-5.41854,0,-55.6695,-5.41854,-55.6695	1/1:23:0,22,0:0:0:22,0:762,0:-68.6155,-6.62266,0,-68.6155,-6.62266,-68.6155	1/1:40:0,40,0:0:0:40,0:1367,0:-123.284,-12.0412,0,-123.284,-12.0412,-123.284	1/1:21:0,21,0:0:0:21,0:705,0:-63.7602,-6.32163,0,-63.7602,-6.32163,-63.7602	1/2:100:0,45,55:0:0:45,55:1528,1967:-284.585,-160.692,-147.145,-124.24,0,-107.684	1/1:29:0,29,0:0:0:29,0:1023,0:-92.3826,-8.72987,0,-92.3826,-8.72987,-92.3826	1/1:71:0,71,0:0:0:71,0:2493,0:-224.625,-21.3731,0,-224.625,-21.3731,-224.625	1/1:48:0,48,0:0:0:48,0:1644,0:-148.242,-14.4494,0,-148.242,-14.4494,-148.242	1/1:12:0,12,0:0:0:12,0:428,0:-38.859,-3.61236,0,-38.859,-3.61236,-38.859	2/2:34:0,2,31:0:0:2,31:72,1092:-98.17,-92.2946,-91.6926,-9.33193,-3.42545,0	1/1:21:0,21,0:0:0:21,0:668,0:-60.4181,-6.32163,0,-60.4181,-6.32163,-60.4181	.:.:.:.:.:.:.:.	1/2:83:0,22,60:0:0:22,60:769,2144:-237.194,-174.638,-168.016,-62.6333,0,-44.5715	1/1:14:0,14,0:0:0:14,0:492,0:-44.612,-4.21442,0,-44.612,-4.21442,-44.612	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:13:0,12,0:0:0:12,0:424,0:-38.2205,-3.61236,0,-38.2205,-3.61236,-38.2205	1/1:16:0,16,0:0:0:16,0:534,0:-48.3754,-4.81648,0,-48.3754,-4.81648,-48.3754	1/1:54:0,54,0:0:0:54,0:1871,0:-168.642,-16.2556,0,-168.642,-16.2556,-168.642	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59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chr08	19866218	.	C	T	10189.9	PASS	AB=0.599783;ABP=82.7471;AC=22;AF=0.122222;AN=180;AO=589;CIGAR=1X;DP=3821;DPB=3821;DPRA=1.20474;EPP=1282.01;EPPR=7016.87;GTI=2;LEN=1;MEANALT=1;MQM=58.2088;MQMR=59.9585;NS=90;NUMALT=1;ODDS=0.187739;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21092;QR=114054;RO=3230;RPL=0;RPP=1282.01;RPPR=7016.87;RPR=589;RUN=1;SAF=0;SAP=1282.01;SAR=589;SRF=0;SRP=7016.87;SRR=3230;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.859	0/0:118:118,0:118:4201:0:0:0,-35.5215,-378.272	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/1:21:19,2:19:675:2:72:-0.513182,0,-54.753	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:19:19,0:19:659:0:0:0,-5.71957,-59.6323	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.499	0/0:29:29,0:29:1014:0:0:0,-8.72987,-91.57	0/0:20:20,0:20:695:0:0:0,-6.0206,-62.8714	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/0:24:24,0:24:839:0:0:0,-7.22472,-75.8273	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:62:62,0:62:2178:0:0:0,-18.6639,-196.283	0/0:82:82,0:82:2889:0:0:0,-24.6845,-260.247	0/0:20:20,0:20:698:0:0:0,-6.0206,-63.1414	0/0:52:51,0:51:1789:0:0:0,-15.3525,-160.931	0/1:42:15,27:15:527:27:968:-74.5904,0,-35.1169	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:185:57,128:57:2039:128:4589:-356.862,0,-128.086	0/0:84:84,0:84:2960:0:0:0,-25.2865,-266.634	0/1:13:3,10:3:108:10:360:-28.6701,0,-6.16178	0/0:128:128,0:128:4534:0:0:0,-38.5318,-408.228	0/0:53:49,4:49:1735:4:144:0,-2.6419,-143.085	0/1:56:35,21:35:1252:21:752:-51.1424,0,-96.1274	0/1:12:7,5:7:237:5:180:-12.9379,0,-18.0467	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/1:7:5,2:5:180:2:68:-4.34916,0,-14.4449	0/0:98:98,0:98:3406:0:0:0,-29.5009,-306.75	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:15:15,0:15:523:0:0:0,-4.51545,-47.3985	.:.:.:.:.:.:.:.	0/1:71:25,46:25:879:46:1631:-125.406,0,-58.0537	0/1:10:2,8:2:68:8:288:-23.1838,0,-3.44741	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:17:17,0:17:580:0:0:0,-5.11751,-52.5194	0/0:24:24,0:24:824:0:0:0,-7.22472,-74.4725	0/0:38:38,0:38:1339:0:0:0,-11.4391,-120.809	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/1:101:44,57:44:1559:57:2048:-153.901,0,-110.169	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.7422	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	1/1:32:3,29:3:104:29:1021:-82.8647,-0.37315,0	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	.:.:.:.:.:.:.:.	0/1:83:22,61:22:767:61:2188:-171.71,0,-44.3593	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:51:51,0:51:1789:0:0:0,-15.3525,-160.92	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:209:209,0:209:7402:0:0:0,-62.9153,-666.23	0/0:78:76,2:76:2674:2:72:0,-16.6436,-234.067	0/1:35:14,21:14:504:21:752:-57.1502,0,-35.162	0/0:21:21,0:21:735:0:0:0,-6.32163,-66.4691	0/0:70:70,0:70:2482:0:0:0,-21.0721,-223.605	0/0:43:43,0:43:1530:0:0:0,-12.9443,-137.992	0/0:8:8,0:8:256:0:0:0,-2.40824,-23.3522	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:32:32,0:32:1073:0:0:0,-9.63296,-96.869	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/1:38:17,21:17:597:21:752:-56.4771,0,-42.617	0/0:46:46,0:46:1607:0:0:0,-13.8474,-144.916	0/0:109:109,0:109:3884:0:0:0,-32.8123,-349.756	0/1:25:13,12:13:459:12:428:-31.1968,0,-34.1183	0/0:79:78,1:78:2795:1:36:0,-20.1841,-248.192	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:66:66,0:66:2326:0:0:0,-19.868,-209.6	0/1:51:20,31:20:684:31:1116:-85.3346,0,-46.5239	0/0:116:116,0:116:4111:0:0:0,-34.9195,-370.176	0/0:50:50,0:50:1741:0:0:0,-15.0515,-156.972	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.926	0/0:61:61,0:61:2138:0:0:0,-18.3628,-192.688	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8032	0/1:45:22,23:22:776:23:823:-60.7019,0,-56.6158	0/1:32:11,21:11:392:21:752:-58.3115,0,-25.9871	0/0:10:10,0:10:342:0:0:0,-3.0103,-31.109	0/1:28:13,15:13:456:15:540:-40.2244,0,-32.9444	0/1:50:15,35:15:531:35:1260:-98.6256,0,-33.0704	0/0:132:131,0:131:4642:0:0:0,-39.4349,-417.587	0/0:47:47,0:47:1627:0:0:0,-14.1484,-146.715
chr08	19866228	.	A	G	10323.5	PASS	AB=0.595005;ABP=75.2159;AC=22;AF=0.122222;AN=180;AO=587;CIGAR=1X;DP=3882;DPB=3882;DPRA=1.18204;EPP=1200.69;EPPR=7086.52;GTI=3;LEN=1;MEANALT=1.04167;MQM=58.3203;MQMR=59.9426;NS=90;NUMALT=1;ODDS=0.400611;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20789;QR=118059;RO=3294;RPL=9;RPP=1200.69;RPPR=7086.52;RPR=578;RUN=1;SAF=0;SAP=1277.66;SAR=587;SRF=0;SRP=7155.84;SRR=3294;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.6996	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:22:20,2:20:720:2:72:-0.212152,0,-58.5038	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.843	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.873	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:39:14,25:14:504:25:886:-68.2893,0,-33.9579	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:183:57,126:57:2031:126:4449:-345.067,0,-127.956	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/1:13:3,10:3:108:10:360:-28.6701,0,-6.16178	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.92	0/0:53:49,4:49:1764:4:144:0,-2.6419,-145.731	0/1:56:35,21:35:1260:21:748:-50.7851,0,-96.8478	0/1:12:7,5:7:252:5:180:-12.9379,0,-19.4166	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/1:7:5,2:5:180:2:72:-4.7276,0,-14.4449	0/0:102:102,0:102:3638:0:0:0,-30.7051,-327.607	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	.:.:.:.:.:.:.:.	0/1:72:24,48:24:860:48:1711:-131.971,0,-56.0477	0/1:10:2,8:2:72:8:288:-23.1838,0,-3.82642	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.032	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:103:44,58:44:1572:58:2059:-154.594,0,-110.853	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	1/1:34:3,31:3:108:31:1104:-89.4914,-0.15985,0	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	.:.:.:.:.:.:.:.	0/1:82:23,59:23:828:59:2107:-165.143,0,-50.155	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.506	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:210:210,0:210:7513:0:0:0,-63.2163,-676.202	0/0:78:76,2:76:2723:2:72:0,-16.6436,-238.476	0/1:37:16,21:16:576:21:743:-55.7358,0,-41.0369	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1598	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:37:16,21:16:572:21:733:-55.063,0,-40.6753	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/1:24:13,11:13:464:11:383:-27.498,0,-34.8728	0/0:81:79,2:79:2840:2:68:0,-17.9261,-249.38	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:70:70,0:70:2504:0:0:0,-21.0721,-224.676	0/1:51:21,30:21:756:30:1072:-81.4049,0,-53.0147	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.824	0/0:50:50,0:50:1763:0:0:0,-15.0515,-158.95	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:46:23,23:23:815:23:798:-58.1296,0,-59.8234	0/1:31:11,20:11:396:20:697:-53.6948,0,-26.6508	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:29:14,15:14:504:15:521:-38.2032,0,-36.9682	0/1:52:16,36:16:576:36:1274:-99.2993,0,-36.5214	0/0:137:137,0:137:4916:0:0:0,-41.2411,-442.219	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968
chr08	19866254	.	CAGAACA	CAGGACA,CAGGACT	86007.9	PASS	AB=0.395616,0.600209;ABP=93.6772,86.5689;AC=159,21;AF=0.883333,0.116667;AN=180;AO=3275,584;CIGAR=3M1X3M,3M1X2M1X;DP=3894;DPB=3894;DPRA=0,1.18341;EPP=7114.58,1271.15;EPPR=0;GTI=4;LEN=1,7;MEANALT=1.55556,2.2;MQM=59.946,58.2089;MQMR=0;NS=90;NUMALT=2;ODDS=0.466817;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=117313,20712;QR=0;RO=0;RPL=3275,584;RPP=7114.58,1271.15;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=7114.58,1271.15;SAR=3275,584;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/1:41:0,41,0:0:0:41,0:1468,0:-132.416,-12.3422,0,-132.416,-12.3422,-132.416	1/1:122:0,122,0:0:0:122,0:4380,0:-394.372,-36.7257,0,-394.372,-36.7257,-394.372	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:19:0,19,0:0:0:19,0:676,0:-61.0806,-5.71957,0,-61.0806,-5.71957,-61.0806	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/2:22:0,20,2:0:0:20,2:708,72:-63.8976,-6.23275,-0.212151,-58.0241,0,-57.422	1/1:45:0,45,0:0:0:45,0:1608,0:-145.01,-13.5464,0,-145.01,-13.5464,-145.01	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:43:0,43,0:0:0:43,0:1539,0:-138.802,-12.9443,0,-138.802,-12.9443,-138.802	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:65:0,65,0:0:0:65,0:2328,0:-209.78,-19.567,0,-209.78,-19.567,-209.78	1/1:87:0,87,0:0:0:87,0:3124,0:-281.386,-26.1896,0,-281.386,-26.1896,-281.386	1/1:20:0,17,0:0:0:17,0:608,0:-54.6925,-5.11751,0,-54.6925,-5.11751,-54.6925	1/1:52:0,51,0:0:0:51,0:1797,0:-161.65,-15.3525,0,-161.65,-15.3525,-161.65	1/2:42:0,15,27:0:0:15,27:540,958:-122.388,-78.3247,-73.8093,-44.4211,0,-36.2933	1/1:16:0,16,0:0:0:16,0:561,0:-50.8171,-4.81648,0,-50.8171,-4.81648,-50.8171	1/2:181:0,56,124:0:0:56,124:2012,4381:-520.598,-356.465,-339.607,-164.133,0,-126.805	1/1:90:0,85,0:0:0:85,0:3040,0:-273.465,-25.5876,0,-273.465,-25.5876,-273.465	1/2:13:0,3,10:0:0:3,10:108,359:-38.3232,-29.5103,-28.6072,-9.17208,0,-6.16178	1/1:129:0,128,0:0:0:128,0:4600,0:-413.803,-38.5318,0,-413.803,-38.5318,-413.803	1/1:52:0,48,4:0:0:48,4:1728,144:-155.41,-14.4494,0,-143.661,-2.34087,-142.457	1/2:54:0,32,21:0:0:32,21:1152,742:-154.422,-60.4211,-50.7882,-93.9974,0,-87.6757	1/2:12:0,7,5:0:0:7,5:248,180:-35.2446,-15.0451,-12.9379,-20.557,0,-19.0518	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/2:7:0,5,2:0:0:5,2:180,72:-20.9199,-6.23275,-4.7276,-15.0469,0,-14.4449	1/1:103:0,102,0:0:0:102,0:3641,0:-327.642,-30.7051,0,-327.642,-30.7051,-327.642	1/1:40:0,40,0:0:0:40,0:1424,0:-128.457,-12.0412,0,-128.457,-12.0412,-128.457	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	.:.:.:.:.:.:.:.	1/2:73:0,26,47:0:0:26,47:932,1659:-210.966,-134.95,-127.123,-76.3721,0,-62.2237	1/2:10:0,2,8:0:0:2,8:68,288:-29.2979,-23.7859,-23.1838,-5.85565,0,-3.44741	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/1:40:0,40,0:0:0:40,0:1430,0:-128.726,-12.0412,0,-128.726,-12.0412,-128.726	1/1:21:0,21,0:0:0:21,0:744,0:-67.2843,-6.32163,0,-67.2843,-6.32163,-67.2843	1/2:102:0,45,56:0:0:45,56:1604,1987:-292.329,-161.609,-148.063,-130.716,0,-113.859	1/1:29:0,27,0:0:0:27,0:968,0:-87.0776,-8.12781,0,-87.0776,-8.12781,-87.0776	1/1:69:0,69,0:0:0:69,0:2468,0:-222.374,-20.7711,0,-222.374,-20.7711,-222.374	1/1:46:0,46,0:0:0:46,0:1652,0:-148.968,-13.8474,0,-148.968,-13.8474,-148.968	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:35:0,4,31:0:0:4,31:141,1102:-101.261,-90.0519,-88.8477,-11.5552,0,-2.22331	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	.:.:.:.:.:.:.:.	1/2:81:0,22,59:0:0:22,59:784,2096:-234.67,-170.766,-164.143,-64.2594,0,-46.4986	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:13:0,10,0:0:0:10,0:356,0:-32.0223,-3.0103,0,-32.0223,-3.0103,-32.0223	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/1:53:0,53,0:0:0:53,0:1892,0:-170.558,-15.9546,0,-170.558,-15.9546,-170.558	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.598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chr08	19978771	.	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chr08	19978805	.	A	G	10681.6	PASS	AB=0.546913;ABP=26.8477;AC=20;AF=0.106383;AN=188;AO=698;CIGAR=1X;DP=4865;DPB=4865;DPRA=1.52795;EPP=1518.7;EPPR=9051.54;GTI=3;LEN=1;MEANALT=1;MQM=40.1218;MQMR=40.1471;NS=94;NUMALT=1;ODDS=0.0659371;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24996;QR=149296;RO=4167;RPL=698;RPP=1518.7;RPPR=9051.54;RPR=0;RUN=1;SAF=0;SAP=1518.7;SAR=698;SRF=0;SRP=9051.54;SRR=4167;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.48528	0/0:110:110,0:110:3944:0:0:0,-33.1133,-330.509	0/0:53:53,0:53:1892:0:0:0,-15.9546,-158.293	0/0:80:80,0:80:2860:0:0:0,-24.0824,-249.145	0/0:39:39,0:39:1400:0:0:0,-11.7402,-121.25	0/0:30:30,0:30:1072:0:0:0,-9.0309,-91.2093	0/0:57:57,0:57:2032:0:0:0,-17.1587,-177.141	0/0:93:93,0:93:3332:0:0:0,-27.9958,-278.117	0/0:43:43,0:43:1536:0:0:0,-12.9443,-130.047	0/0:79:79,0:79:2828:0:0:0,-23.7814,-247.437	0/0:17:17,0:17:600:0:0:0,-5.11751,-52.463	0/0:48:48,0:48:1728:0:0:0,-14.4494,-144.941	0/0:47:47,0:47:1684:0:0:0,-14.1484,-139.715	0/0:46:45,1:45:1616:1:36:0,-10.3929,-135.214	0/0:29:29,0:29:1032:0:0:0,-8.72987,-90.7511	0/0:18:18,0:18:648:0:0:0,-5.41854,-56.3082	0/0:46:46,0:46:1648:0:0:0,-13.8474,-136.833	0/0:32:32,0:32:1152:0:0:0,-9.63296,-97.153	0/0:18:18,0:18:644:0:0:0,-5.41854,-54.4689	0/0:86:86,0:86:3088:0:0:0,-25.8886,-269.575	0/0:134:134,0:134:4800:0:0:0,-40.338,-413.692	0/0:30:30,0:30:1076:0:0:0,-9.0309,-95.0657	0/0:16:16,0:16:576:0:0:0,-4.81648,-50.7454	0/1:58:30,28:30:1080:28:1004:-69.5908,0,-76.157	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.2178	0/1:225:98,127:98:3508:127:4540:-331.657,0,-239.913	0/0:71:71,0:71:2548:0:0:0,-21.3731,-214.675	0/1:21:7,14:7:252:14:496:-35.1692,0,-15.726	0/0:91:89,2:89:3196:2:72:0,-20.6751,-275.313	0/0:155:150,5:150:5376:5:176:0,-31.0619,-441.258	0/1:96:57,39:57:2033:39:1404:-92.7501,0,-149.278	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.3268	0/0:6:6,0:6:212:0:0:0,-1.80618,-18.7079	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.43644	0/0:14:14,0:14:504:0:0:0,-4.21442,-43.0225	0/1:4:1,3:1:36:3:108:-8.28116,0,-2.18348	0/0:104:104,0:104:3728:0:0:0,-31.3071,-327.547	0/0:100:100,0:100:3581:0:0:0,-30.103,-307.516	0/0:25:25,0:25:900:0:0:0,-7.52575,-75.8104	0/0:10:10,0:10:360:0:0:0,-3.0103,-31.4359	0/1:101:34,67:34:1216:67:2408:-175.677,0,-74.3046	0/1:12:5,7:5:180:7:252:-18.3059,0,-12.2783	0/0:66:66,0:66:2360:0:0:0,-19.868,-202.567	0/0:34:34,0:34:1224:0:0:0,-10.235,-106.806	0/0:51:51,0:51:1832:0:0:0,-15.3525,-160.122	0/0:34:34,0:34:1216:0:0:0,-10.235,-107.029	0/0:95:95,0:95:3396:0:0:0,-28.5978,-282.37	0/1:95:35,60:35:1252:60:2144:-158.933,0,-79.8847	0/0:40:40,0:40:1432:0:0:0,-12.0412,-124.744	0/0:78:78,0:78:2796:0:0:0,-23.4803,-244.902	0/0:43:43,0:43:1544:0:0:0,-12.9443,-136.617	0/0:8:8,0:8:276:0:0:0,-2.40824,-24.6278	0/1:61:28,33:28:1008:33:1180:-80.4961,0,-66.1262	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.7263	0/1:9:7,2:7:252:2:72:-3.72717,0,-18.9714	0/1:76:31,45:31:1112:45:1604:-114.778,0,-72.6701	0/0:10:10,0:10:356:0:0:0,-3.0103,-31.5615	0/0:16:16,0:16:576:0:0:0,-4.81648,-50.7027	0/0:26:26,0:26:928:0:0:0,-7.82678,-82.298	0/0:47:47,0:47:1680:0:0:0,-14.1484,-144.403	0/0:51:50,1:50:1792:1:36:0,-11.8498,-151.458	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.5064	0/0:87:87,0:87:3112:0:0:0,-26.1896,-274.917	0/0:132:128,4:128:4604:4:144:0,-26.776,-387.575	0/1:60:33,27:33:1180:27:972:-66.1673,0,-82.8694	0/0:37:37,0:37:1317:0:0:0,-11.1381,-114.209	0/0:71:71,0:71:2540:0:0:0,-21.3731,-220.137	0/0:54:52,2:52:1872:2:72:0,-9.60049,-155.173	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.8087	0/0:52:52,0:52:1848:0:0:0,-15.6536,-154.125	0/0:52:52,0:52:1868:0:0:0,-15.6536,-164.891	0/1:13:4,9:4:140:9:320:-24.1573,0,-8.01933	0/0:57:57,0:57:2048:0:0:0,-17.1587,-171.558	0/1:52:32,20:32:1148:20:720:-45.662,0,-81.9908	0/0:63:63,0:63:2256:0:0:0,-18.9649,-193.938	0/0:87:87,0:87:3108:0:0:0,-26.1896,-270.771	0/1:88:31,57:31:1116:57:2036:-146.561,0,-67.4597	0/0:68:68,0:68:2421:0:0:0,-20.47,-204.977	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.7674	0/0:73:73,0:73:2628:0:0:0,-21.9752,-224.932	0/1:77:35,42:35:1252:42:1500:-104.44,0,-78.0713	0/0:59:59,0:59:2112:0:0:0,-17.7608,-183.269	0/0:56:56,0:56:2012:0:0:0,-16.8577,-175.069	0/0:18:18,0:18:644:0:0:0,-5.41854,-56.2391	0/0:43:43,0:43:1548:0:0:0,-12.9443,-131.32	0/0:78:77,1:77:2768:1:36:0,-20.5776,-238.422	0/0:32:32,0:32:1136:0:0:0,-9.63296,-95.0169	0/1:46:24,22:24:864:22:788:-53.0069,0,-59.2823	0/1:46:23,23:23:828:23:824:-56.3571,0,-56.0961	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.3413	0/1:60:34,26:34:1212:26:936:-62.4526,0,-87.0382	0/1:47:16,31:16:576:31:1116:-82.9916,0,-34.2455	0/0:63:63,0:63:2256:0:0:0,-18.9649,-196.186	0/0:57:57,0:57:2044:0:0:0,-17.1587,-176.562
chr08	20633346	.	GTTC	GTTT,ATTT	273675	PASS	AB=0.818846,0.178598;ABP=2420.75,2459.68;AC=168,20;AF=0.893617,0.106383;AN=188;AO=11337,491;CIGAR=3M1X,1X2M1X;DP=11868;DPB=11868;DPRA=0,1.05059;EPP=22956.4,1000.85;EPPR=13.8677;GTI=9;LEN=1,4;MEANALT=1.58511,2.27273;MQM=59.9921,59.9104;MQMR=60;NS=94;NUMALT=2;ODDS=4.18519;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=405397,17201;QR=180;RO=5;RPL=195,8;RPP=22956.4,1000.85;RPPR=13.8677;RPR=11142,483;RUN=1,1;SAF=11335,491;SAP=24603.6,1069.2;SAR=2,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:67:0,67,0:0:0:67,0:2387,0:-215.087,-20.169,0,-215.087,-20.169,-215.087	1/1:45:0,45,0:0:0:45,0:1620,0:-146.09,-13.5464,0,-146.09,-13.5464,-146.09	1/1:160:0,160,0:0:0:160,0:5740,0:-516.715,-48.1648,0,-516.715,-48.1648,-516.715	1/1:231:0,229,0:0:0:229,0:8204,0:-738.104,-68.9359,0,-738.104,-68.9359,-738.104	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/1:23:0,22,0:0:0:22,0:792,0:-71.2458,-6.62266,0,-71.2458,-6.62266,-71.2458	1/1:191:0,191,0:0:0:191,0:6864,0:-617.825,-57.4967,0,-617.825,-57.4967,-617.825	1/1:140:0,140,0:0:0:140,0:4979,0:-448.256,-42.1442,0,-448.256,-42.1442,-448.256	1/1:60:0,60,0:0:0:60,0:2131,0:-192.056,-18.0618,0,-192.056,-18.0618,-192.056	1/1:141:0,141,0:0:0:141,0:5061,0:-455.631,-42.4452,0,-455.631,-42.4452,-455.631	1/1:196:0,196,0:0:0:196,0:7025,0:-632.309,-59.0019,0,-632.309,-59.0019,-632.309	1/1:186:0,185,0:0:0:185,0:6620,0:-595.626,-55.6906,0,-595.626,-55.6906,-595.626	1/1:121:0,121,0:0:0:121,0:4327,0:-389.606,-36.4246,0,-389.606,-36.4246,-389.606	1/1:241:0,241,0:0:0:241,0:8533,0:-767.971,-72.5482,0,-767.971,-72.5482,-767.971	1/1:111:0,111,0:0:0:111,0:3973,0:-357.759,-33.4143,0,-357.759,-33.4143,-357.759	1/1:108:0,107,0:0:0:107,0:3812,0:-342.917,-32.2102,0,-342.917,-32.2102,-342.917	1/1:278:0,278,0:0:0:278,0:9919,0:-892.65,-83.6863,0,-892.65,-83.6863,-892.65	1/1:81:0,80,0:0:0:80,0:2840,0:-255.586,-24.0824,0,-255.586,-24.0824,-255.586	1/1:104:0,103,0:0:0:103,0:3691,0:-332.032,-31.0061,0,-332.032,-31.0061,-332.032	1/1:214:0,214,0:0:0:214,0:7683,0:-691.501,-64.4204,0,-691.501,-64.4204,-691.501	1/1:88:0,88,0:0:0:88,0:3137,0:-282.555,-26.4906,0,-282.555,-26.4906,-282.555	1/1:147:0,147,0:0:0:147,0:5230,0:-470.838,-44.2514,0,-470.838,-44.2514,-470.838	1/1:132:0,131,0:0:0:131,0:4684,0:-421.379,-39.4349,0,-421.379,-39.4349,-421.379	1/2:175:0,146,29:0:0:146,29:5193,1023:-506.854,-83.6521,-39.7017,-423.555,0,-414.825	1/1:67:0,67,0:0:0:67,0:2400,0:-216.257,-20.169,0,-216.257,-20.169,-216.257	1/2:261:0,223,37:0:0:223,37:7996,1309:-758.937,-106.758,-39.6285,-652.319,0,-641.181	1/1:256:0,255,0:0:0:255,0:9098,0:-818.565,-76.7627,0,-818.565,-76.7627,-818.565	1/2:71:0,61,10:0:0:61,10:2154,350:-204.237,-28.8265,-10.4637,-175.761,0,-172.75	1/1:309:0,308,0:0:0:308,0:11031,0:-992.323,-92.7172,0,-992.323,-92.7172,-992.323	1/1:103:0,102,0:0:0:102,0:3648,0:-328.241,-30.7051,0,-328.241,-30.7051,-328.241	1/2:98:0,86,12:0:0:86,12:3084,419:-285.979,-34.4304,-8.5418,-251.899,0,-248.287	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:48:0,48,0:0:0:48,0:1724,0:-155.445,-14.4494,0,-155.445,-14.4494,-155.445	1/2:2:0,1,1:0:0:1,1:36,30:-5.66589,-2.69854,-2.39751,-3.29724,0,-2.99621	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:10:0,9,1:0:0:9,1:316,30:-28.4738,-2.70927,0,-26.0803,-0.0107336,-25.7793	1/1:291:0,290,0:0:0:290,0:10367,0:-932.67,-87.2987,0,-932.67,-87.2987,-932.67	1/1:127:0,127,0:0:0:127,0:4548,0:-409.486,-38.2308,0,-409.486,-38.2308,-409.486	1/1:136:0,135,1:0:0:135,1:4796,24:-431.553,-40.6391,0,-429.695,-38.5402,-429.394	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:153:0,118,35:0:0:118,35:4240,1242:-447.449,-101.548,-66.0267,-346.256,0,-335.72	1/2:127:0,108,19:0:0:108,19:3873,672:-370.983,-55.0867,-22.5755,-316.251,0,-310.531	1/1:152:0,152,0:0:0:152,0:5418,0:-487.751,-45.7566,0,-487.751,-45.7566,-487.751	1/1:142:0,142,0:0:0:142,0:5069,0:-456.354,-42.7463,0,-456.354,-42.7463,-456.354	1/1:105:0,105,0:0:0:105,0:3767,0:-339.228,-31.6082,0,-339.228,-31.6082,-339.228	1/1:137:0,136,0:0:0:136,0:4884,0:-439.343,-40.9401,0,-439.343,-40.9401,-439.343	1/1:98:0,98,0:0:0:98,0:3508,0:-315.93,-29.5009,0,-315.93,-29.5009,-315.93	1/2:200:0,145,54:0:0:145,54:5198,1886:-577.447,-153.49,-109.841,-424.057,0,-407.801	1/1:122:0,122,0:0:0:122,0:4348,0:-391.494,-36.7257,0,-391.494,-36.7257,-391.494	1/1:145:0,145,0:0:0:145,0:5197,0:-467.866,-43.6494,0,-467.866,-43.6494,-467.866	1/1:178:0,178,0:0:0:178,0:6377,0:-574.017,-53.5833,0,-574.017,-53.5833,-574.017	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:139:0,101,38:0:0:101,38:3611,1351:-404.886,-110.451,-80.0468,-294.792,0,-283.352	1/1:68:0,68,0:0:0:68,0:2435,0:-219.405,-20.47,0,-219.405,-20.47,-219.405	1/2:38:0,33,5:0:0:33,5:1188,176:-111.622,-14.68,-4.74604,-97.2946,0,-95.7895	1/2:217:0,161,54:0:0:161,54:5763,1895:-624.293,-154.324,-105.858,-470.073,0,-453.817	1/1:58:0,58,0:0:0:58,0:2065,0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chr08	20633359	.	A	G	4982.15	PASS	AB=0.178214;ABP=5130.43;AC=40;AF=0.212766;AN=188;AO=1050;CIGAR=1X;DP=11754;DPB=11754;DPRA=1.27663;EPP=2214.1;EPPR=23209.5;GTI=15;LEN=1;MEANALT=1.09434;MQM=59.701;MQMR=59.9865;NS=94;NUMALT=1;ODDS=2.42237;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37451;QR=381921;RO=10699;RPL=1042;RPP=2214.1;RPPR=23218.2;RPR=8;RUN=1;SAF=1050;SAP=2283.06;SAR=0;SRF=10698;SRP=23226.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:55,17:55:1957:17:593:-32.0206,0,-154.729	0/0:45:43,1:43:1529:1:36:0,-9.96195,-134.346	0/1:155:127,28:127:4519:28:1000:-43.6557,0,-360.22	0/0:233:232,1:232:8293:1:36:0,-66.5417,-742.781	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:190:170,20:170:6101:20:720:-7.93308,0,-491.992	0/0:139:139,0:139:4931:0:0:0,-41.8432,-443.94	0/1:64:51,13:51:1828:13:458:-17.4909,0,-145.535	0/0:140:139,1:139:4984:1:36:0,-39.8653,-446.428	0/0:194:192,1:192:6861:1:36:0,-54.8603,-613.961	0/1:184:160,24:160:5736:24:856:-21.9716,0,-460.966	0/1:118:94,24:94:3353:24:856:-41.8396,0,-266.464	0/1:240:203,37:203:7275:37:1309:-45.8624,0,-582.553	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511	0/0:111:110,1:110:3936:1:27:0,-30.7145,-351.733	0/0:271:269,2:269:9555:2:72:0,-74.7424,-853.075	0/0:76:75,1:75:2654:1:36:0,-19.28,-235.506	0/0:97:97,0:97:3441:0:0:0,-29.1999,-309.904	0/1:209:166,43:166:5937:43:1544:-76.3378,0,-471.522	0/0:87:87,0:87:3117:0:0:0,-26.1896,-280.755	0/1:148:108,40:108:3880:40:1429:-83.1632,0,-304.841	0/1:125:108,17:108:3856:17:612:-17.7847,0,-309.608	0/1:172:152,19:152:5429:19:676:-9.33225,0,-436.903	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:255:255,0:255:9087:0:0:0,-76.7626,-817.806	0/1:250:203,47:203:7238:47:1669:-75.2378,0,-576.216	0/1:72:60,12:60:2152:12:417:-16.1861,0,-172.273	0/1:304:250,54:250:8911:54:1924:-81.9238,0,-710.46	0/1:100:72,28:72:2576:28:1008:-60.9334,0,-201.987	0/0:100:100,0:100:3558:0:0:0,-30.103,-320.426	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:48:48,0:48:1679:0:0:0,-14.4494,-151.391	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:9:8,1:8:269:1:27:0,-0.00948704,-21.8363	0/0:295:295,0:295:10571:0:0:0,-88.8038,-951.301	0/0:126:126,0:126:4478:0:0:0,-37.9298,-403.189	0/0:133:133,0:133:4733:0:0:0,-40.037,-426.127	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:155:122,33:122:4353:33:1183:-60.1185,0,-345.285	0/1:121:106,15:106:3789:15:536:-12.1502,0,-304.782	0/0:149:137,12:137:4888:12:428:0,-5.99466,-401.213	0/1:140:115,25:115:4092:25:900:-39.1768,0,-326.321	0/0:108:108,0:108:3839:0:0:0,-32.5112,-345.708	0/0:140:140,0:140:4990:0:0:0,-42.1442,-449.243	0/0:94:94,0:94:3384:0:0:0,-28.2968,-304.774	0/1:194:150,44:150:5352:44:1576:-83.7318,0,-423.326	0/0:124:123,1:123:4378:1:36:0,-33.7294,-390.594	0/0:145:145,0:145:5173:0:0:0,-43.6493,-465.71	0/0:179:179,0:179:6417:0:0:0,-53.8844,-577.615	0/0:15:14,1:14:496:1:36:0,-0.917175,-41.376	0/0:132:132,0:132:4725:0:0:0,-39.736,-425.407	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.668	0/1:36:21,15:21:752:15:540:-38.0995,0,-57.1692	0/1:216:191,25:191:6810:25:874:-13.9518,0,-547.949	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:32:29,3:29:1025:3:108:-0.44221,0,-82.9277	0/0:125:125,0:125:4461:0:0:0,-37.6287,-401.66	0/1:307:264,43:264:9450:43:1544:-46.1356,0,-758.037	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:234:193,40:193:6874:40:1432:-58.6778,0,-547.74	0/1:155:115,40:115:4109:40:1428:-82.1579,0,-323.334	0/0:112:102,10:102:3649:10:356:0,-1.33411,-296.231	0/1:85:66,19:66:2368:19:684:-36.3028,0,-187.79	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:49:38,11:38:1360:11:387:-20.4155,0,-107.95	0/1:88:71,17:71:2548:17:612:-28.9228,0,-203.08	0/1:73:59,14:59:2120:14:504:-23.7229,0,-169.093	0/1:197:162,35:162:5789:35:1239:-52.5108,0,-461.821	0/1:44:31,13:31:1089:13:468:-29.2143,0,-85.072	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:71:71,0:71:2495:0:0:0,-21.3731,-224.799	0/0:182:182,0:182:6501:0:0:0,-54.7875,-585.022	0/0:159:159,0:159:5673:0:0:0,-47.8638,-510.69	0/1:251:209,42:209:7389:42:1508:-60.4561,0,-589.446	0/0:128:128,0:128:4550:0:0:0,-38.5318,-409.666	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2796	0/0:110:110,0:110:3899:0:0:0,-33.1133,-351.102	0/1:94:82,12:82:2933:12:417:-9.19052,0,-235.906	0/0:227:227,0:227:8109:0:0:0,-68.3338,-729.827	0/0:177:177,0:177:6324:0:0:0,-53.2823,-569.254	0/1:118:90,28:90:3227:28:1008:-55.5148,0,-255.129	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/1:224:184,40:184:6546:40:1425:-61.1023,0,-521.796	0/1:66:53,13:53:1900:13:468:-22.5917,0,-151.41	0/0:135:135,0:135:4844:0:0:0,-40.639,-436.113	0/0:128:128,0:128:4600:0:0:0,-38.5318,-414.162	0/0:139:138,1:138:4936:1:36:0,-38.2449,-440.792	0/1:290:251,38:251:8980:38:1337:-33.2714,0,-720.823	0/1:106:85,21:85:2972:21:752:-36.0971,0,-235.799	0/0:95:95,0:95:3397:0:0:0,-28.5978,-305.943	0/0:180:180,0:180:6425:0:0:0,-54.1854,-578.328
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chr08	20633452	.	G	T	6111.46	PASS	AB=0.187215;ABP=4655.56;AC=43;AF=0.231183;AN=186;AO=1032;CIGAR=1X;DP=10981;DPB=10981;DPRA=1.22767;EPP=2209.36;EPPR=20862.1;GTI=18;LEN=1;MEANALT=1.02128;MQM=54.3004;MQMR=59.8946;NS=93;NUMALT=1;ODDS=1.84941;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37031;QR=355113;RO=9947;RPL=1028;RPP=2209.36;RPPR=20879.2;RPR=4;RUN=1;SAF=0;SAP=2243.97;SAR=1032;SRF=2;SRP=21585.3;SRR=9945;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:30,9:30:1076:9:324:-17.6964,0,-85.4127	0/0:236:236,0:236:8458:0:0:0,-71.0431,-760.969	0/1:261:201,60:201:7174:60:2160:-115.406,0,-567.063	0/0:148:148,0:148:5291:0:0:0,-44.5524,-476.321	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:70:70,0:70:2472:0:0:0,-21.0721,-222.729	0/1:125:98,27:98:3481:27:972:-50.1036,0,-275.871	0/0:236:236,0:236:8446:0:0:0,-71.0431,-760.117	0/1:160:139,21:139:4941:21:752:-19.6664,0,-396.669	0/0:109:109,0:109:3879:0:0:0,-32.8123,-349.209	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/1:109:90,19:90:3204:19:680:-28.5161,0,-255.753	0/1:104:86,18:86:3066:18:648:-26.997,0,-244.843	0/1:84:75,9:75:2665:9:324:-4.1714,0,-214.748	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.593	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.886	0/0:106:106,0:106:3786:0:0:0,-31.9092,-340.93	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:59:59,0:59:2087:0:0:0,-17.7608,-188.096	0/1:118:93,25:93:3306:25:900:-45.735,0,-262.233	0/0:144:144,0:144:5125:0:0:0,-43.3483,-461.394	0/1:71:49,22:49:1752:22:788:-49.8524,0,-136.504	0/1:45:39,6:39:1400:6:216:-6.13874,0,-112.753	0/1:98:87,11:87:3103:11:396:-6.42158,0,-249.992	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.986	0/0:302:302,0:302:10782:0:0:0,-90.9111,-970.285	0/1:263:215,48:215:7700:48:1728:-76.2452,0,-613.835	0/1:72:65,7:65:2302:7:252:-1.28132,0,-185.76	0/1:352:285,67:285:10169:67:2408:-110.672,0,-809.173	0/1:367:312,55:312:11154:55:1976:-66.5264,0,-893.243	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.432	0/1:4:3,1:3:104:1:36:-2.38905,0,-8.49869	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:10:6,4:6:216:4:144:-10.2698,0,-16.7802	0/0:235:235,0:235:8413:0:0:0,-70.742,-757.146	0/0:217:217,0:217:7766:0:0:0,-65.3235,-698.965	0/0:92:92,0:92:3268:0:0:0,-27.6948,-294.331	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:248:215,32:215:7712:32:1152:-28.8658,0,-619.397	0/1:166:124,42:124:4431:42:1508:-85.8604,0,-348.214	0/1:106:91,15:91:3228:15:525:-15.5543,0,-258.818	0/1:115:94,21:94:3351:21:756:-33.6972,0,-267.128	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:72:72,0:72:2561:0:0:0,-21.6742,-230.739	0/0:135:135,0:135:4794:0:0:0,-40.639,-431.603	0/1:254:205,49:205:7343:49:1745:-80.736,0,-584.456	0/0:102:102,0:102:3625:0:0:0,-30.7051,-326.456	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.651	0/0:120:120,0:120:4284:0:0:0,-36.1236,-385.734	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:182:179,3:179:6366:3:108:0,-44.7376,-562.918	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.78	0/1:25:11,14:11:396:14:504:-38.0544,0,-28.457	0/1:201:163,38:163:5790:38:1360:-61.9419,0,-460.708	0/0:43:43,0:43:1503:0:0:0,-12.9443,-135.186	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.479	0/1:193:170,23:170:6075:23:828:-16.6914,0,-488.753	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	0/1:207:176,31:176:6307:31:1112:-38.0505,0,-505.408	0/1:272:207,65:207:7374:65:2336:-128.369,0,-581.815	0/1:118:101,17:101:3597:17:608:-19.4511,0,-288.343	0/1:105:86,19:86:3079:19:680:-29.8755,0,-245.729	0/0:128:126,2:126:4508:2:72:0,-31.6951,-399.032	0/1:110:82,28:82:2900:28:989:-55.7759,0,-228.104	0/1:25:20,5:20:720:5:180:-9.00284,0,-57.603	0/1:82:64,18:64:2292:18:640:-32.3347,0,-181.851	0/1:113:99,14:99:3540:14:504:-11.6698,0,-284.792	0/1:29:26,3:26:928:3:108:-1.33201,0,-75.1084	0/0:161:161,0:161:5735:0:0:0,-48.4658,-516.267	0/0:117:117,0:117:4182:0:0:0,-35.2205,-376.534	0/0:122:122,0:122:4330:0:0:0,-36.7257,-389.874	0/0:212:211,1:211:7554:1:36:0,-60.2201,-676.21	0/1:110:93,17:93:3327:17:612:-21.373,0,-266.507	0/0:228:228,0:228:8167:0:0:0,-68.6348,-735.032	0/1:10:5,5:5:176:5:180:-13.5002,0,-13.1747	0/0:150:150,0:150:5349:0:0:0,-45.1545,-481.543	0/1:106:76,30:76:2707:30:1080:-64.7997,0,-211.957	0/0:135:135,0:135:4844:0:0:0,-40.639,-436.081	0/0:138:138,0:138:4931:0:0:0,-41.5421,-443.826	0/1:84:61,23:61:2188:23:828:-49.4883,0,-171.896	0/0:113:112,1:112:3999:1:36:0,-30.4181,-356.496	0/1:183:140,43:140:5020:43:1540:-83.6228,0,-396.854	0/1:64:51,13:51:1832:13:468:-22.8945,0,-145.895	0/0:118:118,0:118:4172:0:0:0,-35.5215,-375.647	0/0:98:98,0:98:3476:0:0:0,-29.5009,-313.032	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:150:128,22:128:4550:22:788:-25.84,0,-364.483	0/1:113:85,28:85:3036:28:1008:-56.8082,0,-239.454	0/0:81:80,0:80:2852:0:0:0,-24.0824,-256.598	0/0:163:163,0:163:5843:0:0:0,-49.0679,-525.958
chr08	20633470	.	G	A	46836.9	PASS	AB=0.328019;ABP=2758.34;AC=89;AF=0.478495;AN=186;AO=3532;CIGAR=1X;DP=10958;DPB=10958;DPRA=34.383;EPP=7672.65;EPPR=16117.5;GTI=14;LEN=1;MEANALT=1.05495;MQM=58.1452;MQMR=59.9581;NS=93;NUMALT=1;ODDS=1.8844;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126146;QR=265125;RO=7421;RPL=3532;RPP=7672.65;RPPR=16117.5;RPR=0;RUN=1;SAF=0;SAP=7672.65;SAR=3532;SRF=0;SRP=16117.5;SRR=7421;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:15,22:15:540:22:788:-60.0379,0,-37.7984	0/1:235:194,41:194:6952:41:1460:-60.7071,0,-554.907	0/1:256:143,113:143:5124:113:4036:-285.631,0,-384.238	0/1:148:110,38:110:3944:38:1368:-78.866,0,-310.597	0/1:66:42,24:42:1508:24:864:-58.2146,0,-116.147	0/1:70:49,21:49:1756:21:744:-46.2104,0,-137.252	0/1:121:76,45:76:2708:45:1593:-107.175,0,-207.54	0/1:237:166,71:166:5940:71:2548:-158.197,0,-463.361	0/1:162:103,59:103:3680:59:2108:-141.045,0,-282.447	0/1:109:72,37:72:2576:37:1293:-83.8167,0,-199.277	0/1:54:37,17:37:1319:17:608:-38.7964,0,-102.755	0/1:109:67,42:67:2391:42:1508:-102.989,0,-182.626	0/1:105:72,33:72:2568:33:1184:-74.8751,0,-199.762	0/1:83:54,29:54:1888:29:1031:-68.0117,0,-145.21	0/1:82:73,9:73:2582:9:320:-4.4579,0,-207.94	0/1:109:67,42:67:2399:42:1496:-102.106,0,-183.354	0/1:107:67,40:67:2387:40:1432:-96.9592,0,-182.877	0/1:55:45,10:45:1607:10:360:-16.1738,0,-128.363	0/1:58:47,11:47:1676:11:396:-18.523,0,-133.667	0/1:116:78,37:78:2777:37:1332:-85.1455,0,-215.192	0/1:147:117,30:117:4176:30:1067:-52.0898,0,-331.345	0/1:73:38,35:38:1356:35:1241:-89.9673,0,-100.309	0/1:46:37,9:37:1324:9:316:-14.8267,0,-105.615	0/1:97:70,27:70:2512:27:964:-57.8198,0,-197.132	0/1:54:47,7:47:1688:7:252:-6.77334,0,-135.951	0/1:298:245,53:245:8760:53:1896:-81.2096,0,-698.684	0/1:258:161,97:161:5752:97:3467:-234.185,0,-440.124	0/1:72:40,32:40:1427:32:1152:-82.2388,0,-107.048	0/1:353:207,146:207:7412:146:5210:-362.426,0,-560.859	0/1:364:216,148:216:7683:148:5282:-364.834,0,-581.932	0/1:114:83,31:83:2936:31:1067:-62.0116,0,-230.157	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:10:5,5:5:180:5:180:-13.5085,0,-13.5418	0/1:231:193,38:193:6906:38:1368:-53.8774,0,-552.051	0/1:216:151,65:151:5396:65:2340:-145.832,0,-420.75	0/1:93:68,25:68:2440:25:896:-52.9564,0,-191.859	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:249:183,66:183:6564:66:2376:-138.736,0,-515.884	0/1:163:70,93:70:2512:93:3340:-251.559,0,-176.487	0/1:104:62,42:62:2196:42:1504:-104.215,0,-166.599	0/1:113:60,53:60:2132:53:1889:-136.214,0,-158.074	0/1:90:61,29:61:2183:29:1040:-66.8217,0,-169.643	0/1:73:52,21:52:1847:21:756:-46.392,0,-144.534	0/1:134:95,39:95:3400:39:1388:-84.8564,0,-265.877	0/1:259:195,64:195:6972:64:2284:-127.724,0,-549.578	0/0:103:94,9:94:3360:9:324:0,-1.50023,-273.111	0/0:123:118,5:118:4216:5:176:0,-20.8417,-363.433	0/1:120:79,41:79:2824:41:1464:-95.9315,0,-218.276	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:181:134,46:134:4776:46:1648:-93.9746,0,-375.454	0/1:34:23,11:23:828:11:388:-25.0152,0,-64.6091	0/1:23:8,15:8:288:15:540:-41.9088,0,-19.3437	0/1:204:122,81:122:4359:81:2873:-197.179,0,-331.016	0/1:44:23,21:23:828:21:741:-53.6572,0,-61.5988	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:16:10,6:10:360:6:216:-14.9717,0,-27.9278	0/1:76:41,34:41:1460:34:1182:-83.7438,0,-108.527	0/1:193:113,80:113:4017:80:2863:-199.752,0,-303.621	0/1:4:2,2:2:72:2:72:-5.63014,0,-5.6326	0/1:205:122,83:122:4380:83:2976:-206.335,0,-332.661	0/1:269:150,119:150:5360:119:4245:-300.997,0,-401.557	0/1:123:72,51:72:2560:51:1813:-126.271,0,-193.624	0/1:106:66,40:66:2368:40:1424:-96.508,0,-181.469	0/1:129:94,35:94:3357:35:1256:-74.4948,0,-263.51	0/1:111:63,48:63:2260:48:1720:-121.592,0,-170.246	0/1:24:14,10:14:504:10:360:-25.4964,0,-38.4734	0/1:82:50,32:50:1792:32:1144:-77.9543,0,-136.878	0/1:116:63,53:63:2247:53:1895:-135.895,0,-167.573	0/1:29:13,16:13:468:16:571:-42.9818,0,-33.7298	0/1:159:139,20:139:4968:20:716:-16.9039,0,-399.406	0/1:115:101,14:101:3612:14:500:-10.6901,0,-290.668	0/1:123:100,23:100:3583:23:828:-37.8174,0,-285.649	0/1:211:150,61:150:5376:61:2192:-133.881,0,-420.454	0/1:110:74,35:74:2627:35:1246:-78.3563,0,-203.492	0/1:228:168,60:168:6001:60:2137:-123.959,0,-471.56	0/1:9:2,7:2:72:7:252:-20.2783,0,-4.12745	0/1:149:128,21:128:4584:21:756:-23.5138,0,-367.871	0/1:105:64,41:64:2292:41:1464:-99.5843,0,-174.933	0/1:132:91,41:91:3264:41:1465:-92.3867,0,-254.244	0/1:135:104,31:104:3719:31:1108:-59.2802,0,-294.27	0/1:81:44,37:44:1554:37:1328:-95.3845,0,-115.767	0/1:109:72,37:72:2580:37:1328:-87.0038,0,-199.637	0/1:183:105,78:105:3746:78:2778:-194.995,0,-282.249	0/1:63:42,21:42:1496:21:748:-48.387,0,-115.97	0/1:119:76,43:76:2724:43:1548:-103.757,0,-209.577	0/1:96:72,24:72:2550:24:860:-48.8148,0,-200.844	0/1:42:23,19:23:819:19:684:-49.2455,0,-61.3883	0/1:152:93,59:93:3323:59:2066:-140.311,0,-253.514	0/1:112:75,37:75:2654:37:1323:-85.5097,0,-205.391	0/1:82:66,16:66:2364:16:568:-26.767,0,-188.332	0/1:166:104,62:104:3701:62:2224:-150.429,0,-283.321
chr08	20633478	.	T	C	227034	PASS	AB=0.737071;ABP=1126.29;AC=168;AF=0.903226;AN=186;AO=10180;CIGAR=1X;DP=10831;DPB=10831;DPRA=0;EPP=22108.6;EPPR=1390.58;GTI=4;LEN=1;MEANALT=1.11828;MQM=59.3261;MQMR=59.9797;NS=93;NUMALT=1;ODDS=1.46028;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=363409;QR=21017;RO=639;RPL=10180;RPP=22108.6;RPPR=1390.58;RPR=0;RUN=1;SAF=0;SAP=22108.6;SAR=10180;SRF=0;SRP=1390.58;SRR=639;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1360:-122.637,-11.4391,0	1/1:241:0,240:0:0:240:8554:-768.848,-72.2472,0	1/1:256:0,256:0:0:256:9155:-823.204,-77.0637,0	1/1:145:1,143:1:32:143:5121:-457.806,-40.4889,0	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	1/1:69:0,69:0:0:69:2464:-222.006,-20.7711,0	1/1:122:0,122:0:0:122:4315:-388.47,-36.7257,0	1/1:232:0,232:0:0:232:8282:-745.364,-69.839,0	1/1:161:0,161:0:0:161:5702:-512.942,-48.4658,0	1/1:110:0,110:0:0:110:3918:-352.717,-33.1133,0	1/1:57:0,57:0:0:57:2015:-181.62,-17.1587,0	1/1:105:1,104:1:36:104:3706:-329.929,-28.0099,0	1/1:100:0,99:0:0:99:3548:-318.813,-29.802,0	1/1:84:0,84:0:0:84:3012:-271.199,-25.2865,0	1/1:79:0,79:0:0:79:2802:-252.415,-23.7814,0	1/1:107:0,107:0:0:107:3845:-346.218,-32.2102,0	1/1:103:1,102:1:32:102:3655:-325.945,-27.8068,0	1/1:52:1,51:1:36:51:1817:-160.206,-12.0553,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:117:0,117:0:0:117:4181:-376.413,-35.2205,0	1/1:143:0,143:0:0:143:5105:-459.593,-43.0473,0	1/1:72:0,72:0:0:72:2568:-231.298,-21.6742,0	1/1:47:1,46:1:32:46:1641:-144.671,-10.9491,0	0/1:96:18,78:18:610:78:2781:-221.566,0,-26.3168	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:292:89,203:89:2942:203:7219:-561.863,0,-177.11	1/1:257:0,257:0:0:257:9169:-824.785,-77.3647,0	0/1:69:12,57:12:379:57:2046:-163.592,0,-13.6424	1/1:346:3,343:3:78:343:12247:-1094.48,-96.8781,0	1/1:364:1,363:1:21:363:12918:-1159.84,-107.475,0	0/1:111:41,70:41:1415:70:2483:-190.305,0,-94.2252	1/1:4:0,4:0:0:4:129:-11.9229,-1.20412,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:10:1,9:1:36:9:324:-26.4626,0,-0.587975	1/1:227:0,226:0:0:226:8090:-727.73,-68.0328,0	1/1:217:0,216:0:0:216:7733:-695.636,-65.0225,0	1/1:92:0,92:0:0:92:3300:-297.21,-27.6948,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:243:96,146:96:3024:146:5195:-394.079,0,-199.168	1/1:152:10,142:10:296:142:5097:-430.986,-18.8292,0	1/1:105:1,104:1:32:104:3702:-330.062,-28.4088,0	1/1:114:0,114:0:0:114:4081:-367.362,-34.3174,0	1/1:85:0,85:0:0:85:3020:-272.028,-25.5876,0	1/1:74:0,74:0:0:74:2636:-237.488,-22.2762,0	1/1:134:1,131:1:36:131:4654:-415.4,-36.4975,0	0/1:252:76,175:76:2489:175:6216:-483.507,0,-148.332	1/1:99:0,99:0:0:99:3560:-320.607,-29.802,0	1/1:123:0,123:0:0:123:4371:-393.561,-37.0267,0	1/1:119:0,119:0:0:119:4227:-380.609,-35.8226,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:180:45,134:45:1400:134:4779:-375.974,0,-72.0644	1/1:33:0,33:0:0:33:1188:-107.211,-9.93399,0	0/1:23:3,20:3:93:20:712:-57.3922,0,-1.75304	0/1:199:48,150:48:1569:150:5335:-420.163,0,-81.5188	1/1:43:0,43:0:0:43:1513:-136.413,-12.9443,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:16:0,16:0:0:16:566:-51.2699,-4.81648,0	1/1:77:0,77:0:0:77:2726:-245.349,-23.1793,0	1/1:194:0,194:0:0:194:6926:-623.351,-58.3998,0	1/1:4:0,4:0:0:4:144:-13.3112,-1.20412,0	1/1:206:1,205:1:36:205:7314:-654.683,-58.4139,0	1/1:266:1,265:1:21:265:9466:-849.543,-77.974,0	0/1:121:15,106:15:483:106:3777:-303.554,0,-7.35128	1/1:105:0,105:0:0:105:3735:-336.306,-31.6082,0	1/1:131:0,131:0:0:131:4670:-420.444,-39.4349,0	1/1:109:0,109:0:0:109:3910:-351.384,-32.8123,0	1/1:25:0,25:0:0:25:900:-81.298,-7.52575,0	1/1:79:0,79:0:0:79:2824:-253.497,-23.7814,0	1/1:114:1,113:1:36:113:4041:-360.265,-30.7191,0	0/1:27:8,19:8:261:19:683:-53.6676,0,-15.6802	1/1:160:0,160:0:0:160:5725:-515.365,-48.1648,0	0/1:112:36,76:36:1200:76:2728:-212.02,0,-74.5764	1/1:123:0,123:0:0:123:4378:-394.191,-37.0267,0	1/1:211:1,210:1:36:210:7544:-675.252,-59.9191,0	0/1:105:21,84:21:729:84:3008:-238.413,0,-34.3099	1/1:230:0,230:0:0:230:8250:-742.497,-69.2369,0	1/1:10:0,10:0:0:10:356:-32.345,-3.0103,0	1/1:151:0,151:0:0:151:5397:-485.86,-45.4555,0	1/1:106:10,96:10:330:96:3424:-277.572,-1.89184,0	1/1:133:3,130:3:89:130:4610:-406.712,-31.7326,0	1/1:131:0,131:0:0:131:4670:-420.454,-39.4349,0	1/1:84:0,84:0:0:84:3020:-271.958,-25.2865,0	1/1:108:0,108:0:0:108:3851:-346.78,-32.5112,0	1/1:180:0,180:0:0:180:6441:-579.59,-54.1854,0	1/1:63:0,63:0:0:63:2260:-203.37,-18.9649,0	0/1:113:20,92:20:712:92:3300:-263.106,0,-30.3317	0/1:95:19,76:19:680:76:2720:-216.421,0,-32.9313	1/1:42:0,42:0:0:42:1512:-136.365,-12.6433,0	0/1:147:27,120:27:956:120:4271:-340.184,0,-42.1043	0/1:106:25,81:25:839:81:2906:-229.711,0,-43.9057	1/1:82:0,82:0:0:82:2929:-263.84,-24.6845,0	1/1:160:1,159:1:21:159:5668:-508.134,-46.0649,0
chr08	20633556	.	T	C	30059.2	PASS	AB=0.228738;ABP=9343.99;AC=86;AF=0.457447;AN=188;AO=3364;CIGAR=1X;DP=14938;DPB=14938;DPRA=37.8487;EPP=7307.84;EPPR=25120.4;GTI=27;LEN=1;MEANALT=1.07692;MQM=59.9994;MQMR=59.9941;NS=94;NUMALT=1;ODDS=1.22571;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120548;QR=414464;RO=11567;RPL=0;RPP=7307.84;RPPR=25120.4;RPR=3364;RUN=1;SAF=3364;SAP=7307.84;SAR=0;SRF=11567;SRP=25120.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:110:89,21:89:3196:21:752:-34.893,0,-254.749	0/0:56:51,5:51:1836:5:176:0,-0.67266,-149.336	0/1:283:163,120:163:5860:120:4300:-301.985,0,-442.281	0/1:290:217,72:217:7765:72:2578:-144.912,0,-611.522	0/1:89:74,15:74:2660:15:536:-21.7831,0,-212.854	0/0:51:47,4:47:1688:4:144:0,-2.03891,-138.893	0/1:89:77,12:77:2752:12:432:-12.4295,0,-221.131	0/1:154:125,29:125:4468:29:1028:-46.4744,0,-355.932	0/1:276:181,95:181:6488:95:3368:-220.254,0,-500.92	0/1:146:104,42:104:3705:42:1504:-91.7042,0,-289.701	0/1:88:72,16:72:2576:16:576:-25.6843,0,-205.599	0/1:309:244,65:244:8768:65:2324:-116.402,0,-696.086	0/1:195:158,37:158:5672:37:1324:-60.7612,0,-451.896	0/1:142:110,32:110:3933:32:1148:-60.8836,0,-311.415	0/1:125:104,21:104:3744:21:752:-30.3775,0,-299.53	0/1:136:104,32:104:3720:32:1148:-62.6898,0,-294.062	0/1:59:33,26:33:1180:26:936:-66.7987,0,-88.7473	0/1:52:42,10:42:1512:10:360:-17.0907,0,-120.721	0/1:50:44,6:44:1576:6:212:-4.3733,0,-127.08	0/1:208:178,30:178:6369:30:1076:-34.5386,0,-510.684	0/1:277:216,61:216:7716:61:2184:-113.441,0,-611.09	0/0:66:65,1:65:2336:1:36:0,-16.2697,-206.901	0/1:252:203,49:203:7280:49:1760:-82.8243,0,-579.39	0/1:146:101,45:101:3632:45:1612:-101.42,0,-283.133	0/1:177:135,42:135:4844:42:1512:-83.0923,0,-382.83	0/1:288:237,51:237:8504:51:1832:-78.4642,0,-678.649	0/1:400:306,94:306:10956:94:3384:-184.362,0,-865.525	0/1:93:66,27:66:2364:27:972:-59.8021,0,-185.023	0/1:462:360,102:360:12928:102:3656:-190.168,0,-1024.25	0/1:177:143,34:143:5128:34:1216:-56.4643,0,-408.379	0/1:131:85,46:85:3056:46:1646:-108.994,0,-235.833	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:29:27,2:27:960:2:72:0,-1.89315,-79.8796	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/1:26:19,7:19:680:7:252:-15.2022,0,-53.7024	0/1:451:370,81:370:13272:81:2912:-126.55,0,-1058.51	0/1:183:153,30:153:5476:30:1072:-41.704,0,-437.879	0/1:72:58,14:58:2084:14:500:-23.662,0,-166.156	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:170:145,25:145:5200:25:896:-29.7853,0,-416.833	0/1:80:56,24:56:2012:24:860:-53.6394,0,-157.271	0/1:298:237,61:237:8469:61:2188:-107.479,0,-672.505	0/1:151:125,26:125:4496:26:934:-38.9237,0,-359.351	0/1:124:85,39:85:3032:39:1385:-87.62,0,-235.783	0/1:230:177,52:177:6340:52:1856:-98.0633,0,-501.435	0/1:220:161,58:161:5772:58:2084:-121.545,0,-453.309	0/1:232:205,26:205:7324:26:936:-14.6617,0,-589.314	0/1:159:135,24:135:4824:24:864:-30.2188,0,-386.444	0/1:122:96,26:96:3417:26:932:-47.4732,0,-271.018	0/1:141:95,46:95:3416:46:1636:-105.084,0,-265.208	0/1:17:15,2:15:540:2:72:-1.71921,0,-43.819	0/1:119:86,33:86:3092:33:1184:-71.0457,0,-242.684	0/1:78:50,28:50:1788:28:1004:-67.1955,0,-137.722	0/1:18:12,5:12:417:5:180:-11.0747,0,-32.3838	0/1:267:193,74:193:6901:74:2656:-158.911,0,-540.782	0/1:123:97,26:97:3464:26:932:-47.1722,0,-274.946	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:23:19,4:19:680:4:144:-6.38993,0,-54.6055	0/1:138:86,52:86:3088:52:1868:-126.857,0,-236.605	0/1:275:228,47:228:8176:47:1692:-69.7836,0,-653.069	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:445:316,129:316:11321:129:4624:-282.364,0,-884.81	0/1:328:244,84:244:8744:84:3020:-173.292,0,-688.211	0/1:93:69,24:69:2476:24:855:-49.2744,0,-195.098	0/1:135:110,25:110:3948:25:896:-40.3213,0,-314.872	0/1:181:120,61:120:4304:61:2184:-142.34,0,-333.049	0/1:355:296,59:296:10601:59:2124:-84.5626,0,-847.134	0/1:81:71,10:71:2552:10:360:-8.36087,0,-205.547	0/1:137:115,22:115:4128:22:792:-30.3646,0,-330.462	0/1:134:92,42:92:3296:42:1504:-95.3166,0,-256.521	0/1:52:34,18:34:1216:18:648:-42.9983,0,-94.093	0/1:313:271,42:271:9682:42:1508:-41.7922,0,-777.099	0/1:118:89,29:89:3180:29:1032:-57.6719,0,-250.903	0/1:291:234,57:234:8365:57:2048:-96.9918,0,-665.256	0/1:169:114,54:114:4088:54:1932:-123.223,0,-317.172	0/0:108:99,9:99:3521:9:320:0,-3.36888,-287.957	0/1:150:91,59:91:3276:59:2098:-143.935,0,-249.904	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:143:126,17:126:4512:17:612:-12.3661,0,-363.201	0/1:133:108,25:108:3868:25:896:-40.9234,0,-308.278	0/1:273:221,51:221:7920:51:1816:-81.6284,0,-630.733	0/1:172:141,31:141:5041:31:1108:-48.2538,0,-402.057	0/1:165:138,27:138:4956:27:972:-38.128,0,-396.518	0/1:98:76,22:76:2728:22:788:-41.7439,0,-216.262	0/1:351:308,43:308:11028:43:1548:-33.9515,0,-886.752	0/1:87:73,14:73:2609:14:500:-19.1466,0,-208.867	0/1:115:73,42:73:2616:42:1508:-101.396,0,-201.069	0/1:163:105,58:105:3772:58:2080:-138.402,0,-290.61	0/1:58:43,15:43:1540:15:536:-31.1151,0,-121.433	0/1:172:155,17:155:5568:17:612:-3.63628,0,-449.464	0/1:167:148,19:148:5308:19:684:-11.6183,0,-427.581	0/1:243:171,72:171:6132:72:2576:-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chr08	20633613	.	G	A	161571	PASS	AB=0.628482;ABP=2108.31;AC=94;AF=0.5;AN=188;AO=9253;CIGAR=1X;DP=14713;DPB=14713;DPRA=52.724;EPP=20095.6;EPPR=11828.9;GTI=13;LEN=1;MEANALT=1.02151;MQM=59.9854;MQMR=59.9921;NS=94;NUMALT=1;ODDS=2.48656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=323405;QR=193926;RO=5458;RPL=9252;RPP=20087;RPPR=11828.9;RPR=1;RUN=1;SAF=9252;SAP=20087;SAR=1;SRF=5458;SRP=11854.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:111:36,75:36:1279:75:2637:-204.163,0,-81.9981	0/1:58:6,52:6:203:52:1807:-145.44,0,-1.14144	0/1:285:153,132:153:5409:132:4593:-327.747,0,-401.15	0/1:287:78,209:78:2754:209:7300:-570.675,0,-161.707	0/1:84:15,69:15:536:69:2383:-189.441,0,-23.2883	0/1:50:6,44:6:216:44:1514:-121.498,0,-4.73901	0/1:85:35,50:35:1243:50:1748:-132.014,0,-86.5863	0/1:155:30,125:30:1055:125:4364:-346.28,0,-48.6004	0/1:269:128,141:128:4548:141:4920:-361.983,0,-328.51	0/1:142:42,100:42:1488:100:3497:-272.2,0,-91.4683	0/1:89:16,73:16:576:73:2586:-206.197,0,-25.3833	0/1:312:129,183:129:4568:183:6385:-480.832,0,-316.005	0/1:200:70,130:70:2504:130:4561:-350.458,0,-165.407	0/1:142:58,84:58:2036:84:2944:-222.449,0,-140.764	0/1:125:23,102:23:819:102:3575:-284.335,0,-36.4028	0/1:135:35,100:35:1240:100:3560:-279.971,0,-71.2654	0/1:57:25,32:25:896:32:1132:-85.0299,0,-63.8016	0/1:52:9,43:9:324:43:1505:-120.087,0,-13.8523	0/1:51:7,44:7:252:44:1542:-123.718,0,-7.67643	0/1:198:69,129:69:2447:129:4535:-348.722,0,-160.881	0/1:275:61,214:61:2153:214:7409:-584.095,0,-111.253	0/1:64:18,46:18:640:46:1604:-125.381,0,-38.6634	0/1:247:102,145:102:3625:145:5083:-383.269,0,-252.1	0/1:144:89,55:89:3152:55:1871:-125.315,0,-240.557	0/1:172:42,130:42:1492:130:4477:-351.332,0,-82.7974	0/1:281:128,151:128:4573:151:5246:-387.929,0,-327.387	0/1:388:167,221:167:5970:221:7662:-572.844,0,-420.607	0/1:96:63,33:63:2239:33:1144:-74.3639,0,-172.875	0/1:462:215,247:215:7624:247:8674:-641.598,0,-547.126	0/1:174:66,108:66:2356:108:3800:-289.822,0,-159.92	0/1:124:79,45:79:2807:45:1536:-101.198,0,-215.543	0/1:15:10,5:10:360:5:176:-11.6696,0,-28.2289	1/1:27:2,25:2:72:25:872:-71.9597,-1.29109,0	0/1:7:3,4:3:104:4:131:-10.0063,0,-7.5956	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:26:15,11:15:536:11:388:-27.4306,0,-40.748	0/1:459:83,376:83:2951:376:13187:-1047.79,0,-127.652	0/1:178:27,151:27:968:151:5245:-418.613,0,-33.854	0/1:71:13,58:13:455:58:2021:-160.789,0,-19.9088	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:164:105,59:105:3707:59:2071:-137.162,0,-284.462	0/1:78:53,25:53:1881:25:863:-54.5038,0,-146.086	0/1:291:107,184:107:3810:184:6417:-490.034,0,-255.498	0/1:149:41,108:41:1459:108:3763:-294.022,0,-86.7518	0/1:122:38,84:38:1368:84:2936:-227.751,0,-86.6952	0/1:220:51,169:51:1799:169:5930:-467.596,0,-95.9647	0/1:215:56,159:56:2012:159:5535:-433.562,0,-116.632	0/1:226:128,98:128:4536:98:3427:-240.617,0,-340.377	0/1:154:24,130:24:860:130:4548:-363.138,0,-31.3632	0/1:118:25,93:25:900:93:3235:-255.855,0,-45.7995	0/1:137:46,91:46:1639:91:3169:-244.196,0,-106.556	0/1:15:7,8:7:252:8:280:-21.0239,0,-18.5135	0/1:117:60,57:60:2139:57:2011:-146.042,0,-157.557	0/1:76:25,51:25:892:51:1787:-138.233,0,-57.7214	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	0/1:266:185,81:185:6561:81:2807:-172.798,0,-510.501	0/1:121:26,95:26:932:95:3322:-262.779,0,-47.7742	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:24:4,20:4:144:20:716:-57.543,0,-6.0889	0/1:136:51,85:51:1800:85:2978:-227.316,0,-121.339	0/1:272:102,170:102:3623:170:6013:-459.402,0,-244.394	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:436:183,253:183:6529:253:8785:-659.409,0,-456.445	0/1:318:122,196:122:4348:196:6878:-523.374,0,-295.77	0/1:92:58,34:58:2080:34:1179:-78.7153,0,-159.776	0/1:131:52,79:52:1843:79:2748:-208.13,0,-126.715	0/1:179:63,116:63:2243:116:4054:-311.169,0,-148.249	0/1:351:153,198:153:5418:198:6976:-522.253,0,-382.091	0/1:84:30,54:30:1071:54:1899:-145.892,0,-71.4151	0/1:134:68,66:68:2419:66:2273:-164.494,0,-177.628	0/1:136:61,75:61:2166:75:2613:-194.478,0,-154.266	0/1:51:38,13:38:1336:13:455:-25.9294,0,-105.185	0/1:312:42,270:42:1504:270:9445:-756.111,0,-41.7332	0/1:116:60,56:60:2114:56:1972:-142.834,0,-155.609	0/1:279:54,225:54:1936:225:7857:-623.191,0,-90.529	0/1:164:52,112:52:1852:112:3904:-302.193,0,-117.591	0/1:103:65,38:65:2304:38:1335:-89.443,0,-176.613	0/1:150:59,91:59:2080:91:3173:-240.643,0,-142.314	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/1:133:17,116:17:604:116:3971:-317.555,0,-14.6536	0/1:132:85,47:85:3044:47:1659:-109.861,0,-234.454	0/1:262:49,213:49:1747:213:7446:-591.336,0,-78.6437	0/1:167:32,135:32:1136:135:4738:-376.314,0,-52.2769	0/1:167:63,104:63:2218:104:3664:-279.694,0,-149.612	0/1:98:23,75:23:828:75:2642:-208.527,0,-45.3432	0/1:347:98,249:98:3485:249:8706:-679.096,0,-209.404	0/1:85:26,59:26:923:59:2058:-159.901,0,-57.7992	0/1:116:71,45:71:2516:45:1586:-108.109,0,-191.771	0/1:161:91,70:91:3219:70:2487:-175.618,0,-241.466	0/1:57:15,42:15:540:42:1470:-115.434,0,-31.7778	0/1:169:112,57:112:3949:57:1988:-128.318,0,-304.732	0/1:166:111,55:111:3955:55:1950:-125.804,0,-306.172	0/1:243:72,171:72:2553:171: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chr08	20633665	.	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chr08	20897955	.	T	C	13999.6	PASS	AB=0.493126;ABP=3.69692;AC=22;AF=0.117021;AN=188;AO=854;CIGAR=1X;DP=7299;DPB=7299;DPRA=1.24244;EPP=1771.61;EPPR=13996;GTI=0;LEN=1;MEANALT=1.02778;MQM=59.8981;MQMR=59.9634;NS=94;NUMALT=1;ODDS=2.52334;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30342;QR=228336;RO=6444;RPL=844;RPP=1771.61;RPPR=13996;RPR=10;RUN=1;SAF=854;SAP=1857.45;SAR=0;SRF=6444;SRP=13996;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/0:121:121,0:121:4283:0:0:0,-36.4246,-385.65	0/0:57:57,0:57:2010:0:0:0,-17.1587,-181.172	0/0:158:158,0:158:5630:0:0:0,-47.5627,-506.823	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.893	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:156:156,0:156:5530:0:0:0,-46.9607,-497.811	0/0:85:85,0:85:3021:0:0:0,-25.5875,-272.12	0/0:116:116,0:116:4102:0:0:0,-34.9195,-369.367	0/0:29:29,0:29:1014:0:0:0,-8.72987,-91.57	0/0:44:44,0:44:1546:0:0:0,-13.2453,-139.43	0/0:34:34,0:34:1190:0:0:0,-10.235,-107.404	0/0:41:40,1:40:1416:1:36:0,-8.74395,-124.139	0/0:37:37,0:37:1301:0:0:0,-11.1381,-117.389	0/0:38:36,2:36:1263:2:72:0,-4.60242,-107.135	0/0:60:60,0:60:2116:0:0:0,-18.0618,-190.71	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:183:182,1:182:6421:1:36:0,-51.4902,-574.118	0/0:140:140,0:140:4995:0:0:0,-42.1442,-449.699	0/0:115:115,0:115:4120:0:0:0,-34.6184,-370.725	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.805	0/1:121:58,63:58:2036:63:2211:-162.828,0,-147.086	0/0:71:70,1:70:2479:1:36:0,-17.7749,-219.766	0/1:272:142,130:142:5044:130:4647:-336.511,0,-372.228	0/0:140:140,0:140:4959:0:0:0,-42.1442,-446.458	0/1:42:20,22:20:703:22:775:-57.4261,0,-50.9503	0/0:171:171,0:171:6104:0:0:0,-51.4761,-549.461	0/0:188:179,8:179:6294:8:284:0,-30.6153,-540.674	0/1:73:36,37:36:1269:37:1315:-96.6758,0,-92.5356	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4154	0/1:10:4,6:4:144:6:208:-16.0488,0,-10.3033	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:5,2:5:164:2:68:-4.3505,0,-12.9767	0/0:152:152,0:152:5373:0:0:0,-45.7566,-483.708	0/0:239:239,0:239:8485:0:0:0,-71.9462,-763.654	0/0:61:61,0:61:2147:0:0:0,-18.3628,-193.498	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:130:67,63:67:2396:63:2236:-162.368,0,-176.763	0/1:39:20,19:20:711:19:674:-49.1387,0,-52.5755	0/0:122:122,0:122:4345:0:0:0,-36.7257,-391.091	0/0:90:90,0:90:3156:0:0:0,-27.0927,-284.138	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:85:85,0:85:2995:0:0:0,-25.5875,-269.782	0/1:195:91,104:91:3226:104:3702:-274.682,0,-231.862	0/0:118:118,0:118:4200:0:0:0,-35.5215,-378.184	0/0:107:107,0:107:3824:0:0:0,-32.2102,-344.358	0/0:214:214,0:214:7581:0:0:0,-64.4204,-682.33	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:96:54,42:54:1900:42:1496:-106.036,0,-142.377	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:15:7,8:7:252:8:279:-20.9321,0,-18.5135	0/1:91:41,50:41:1452:50:1784:-133.449,0,-103.582	0/0:101:101,0:101:3588:0:0:0,-30.404,-323.127	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:65:64,1:64:2256:1:36:0,-15.9687,-199.703	0/0:71:70,1:70:2456:1:36:0,-17.7749,-217.696	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:164:163,1:163:5815:1:36:0,-45.7706,-519.867	0/0:119:119,0:119:4260:0:0:0,-35.8226,-383.579	0/1:95:58,37:58:2060:37:1323:-90.7735,0,-157.074	0/0:67:66,1:66:2295:1:36:0,-16.5707,-203.212	0/0:258:254,4:254:8942:4:144:0,-64.3521,-791.461	0/0:44:43,1:43:1515:1:36:0,-9.64704,-133.044	0/0:8:8,0:8:261:0:0:0,-2.40824,-23.808	0/0:31:31,0:31:1092:0:0:0,-9.33193,-98.5896	0/0:55:55,0:55:1920:0:0:0,-16.5566,-173.075	0/1:18:4,14:4:144:14:489:-38.8831,0,-7.89508	0/0:87:87,0:87:3100:0:0:0,-26.1896,-279.123	0/1:56:31,25:31:1116:25:873:-61.957,0,-83.894	0/0:74:74,0:74:2604:0:0:0,-22.2762,-233.67	0/0:112:111,1:111:3939:1:36:0,-30.1171,-351.107	0/1:72:41,31:41:1451:31:1097:-77.3639,0,-109.211	0/0:87:83,4:83:2959:4:131:0,-14.0761,-254.43	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/1:60:32,28:32:1131:28:1000:-72.2536,0,-84.036	0/0:134:134,0:134:4780:0:0:0,-40.338,-430.356	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.551	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:59:59,0:59:2073:0:0:0,-17.7608,-186.84	0/0:116:114,2:114:4045:2:72:0,-28.0828,-357.401	0/0:37:37,0:37:1304:0:0:0,-11.1381,-117.661	0/1:79:45,34:45:1579:34:1211:-85.5141,0,-118.616	0/1:51:29,22:29:1019:22:791:-56.163,0,-76.6688	0/0:16:16,0:16:560:0:0:0,-4.81648,-50.7287	0/1:60:31,29:31:1090:29:1035:-75.4013,0,-80.3461	0/1:82:26,56:26:915:56:1993:-154.958,0,-57.9811	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.282	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.701
chr08	20973593	.	C	T	128001	PASS	AB=0.562406;ABP=48.0006;AC=162;AF=0.870968;AN=186;AO=5725;CIGAR=1X;DP=6331;DPB=6331;DPRA=0;EPP=12426;EPPR=1295.09;GTI=4;LEN=1;MEANALT=1.03226;MQM=59.8548;MQMR=59.7678;NS=93;NUMALT=1;ODDS=1.27392;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204917;QR=21442;RO=603;RPL=1;RPP=12426;RPPR=1295.09;RPR=5724;RUN=1;SAF=5725;SAP=12434.7;SAR=0;SRF=603;SRP=1312.41;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1188:-107.211,-9.93399,0	1/1:106:0,106:0:0:106:3808:-342.913,-31.9092,0	1/1:99:0,99:0:0:99:3544:-318.925,-29.802,0	1/1:222:1,221:1:32:221:7888:-706.698,-63.6293,0	1/1:48:0,48:0:0:48:1724:-155.441,-14.4494,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:105:0,105:0:0:105:3741:-336.888,-31.6082,0	1/1:98:0,98:0:0:98:3496:-314.836,-29.5009,0	1/1:61:0,61:0:0:61:2192:-197.532,-18.3628,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:18:0,18:0:0:18:644:-58.2878,-5.41854,0	1/1:44:0,44:0:0:44:1580:-142.053,-13.2453,0	1/1:36:2,34:2:72:34:1224:-103.63,-4.00036,0	1/1:27:2,25:2:72:25:879:-72.5885,-1.29109,0	1/1:30:2,28:2:72:28:1008:-84.1984,-2.19418,0	1/1:32:1,31:1:32:31:1116:-97.5508,-6.43365,0	1/1:27:0,27:0:0:27:967:-87.3446,-8.12781,0	1/1:25:0,25:0:0:25:900:-81.3177,-7.52575,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:64:0,64:0:0:64:2300:-207.259,-19.2659,0	1/1:117:0,117:0:0:117:4183:-376.649,-35.2205,0	1/1:98:0,98:0:0:98:3524:-317.368,-29.5009,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:82:30,52:30:1072:52:1856:-142.632,0,-72.1018	1/1:77:0,77:0:0:77:2751:-247.829,-23.1793,0	0/1:245:97,148:97:3446:148:5304:-403.736,0,-236.601	1/1:159:0,158:0:0:158:5652:-508.437,-47.5627,0	0/1:18:9,9:9:316:9:324:-24.0873,0,-23.3603	1/1:231:0,231:0:0:231:8253:-742.777,-69.5379,0	1/1:113:0,113:0:0:113:4030:-362.876,-34.0164,0	0/1:81:46,35:46:1640:35:1260:-89.3221,0,-123.505	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:6:3,3:3:108:3:108:-8.26553,0,-8.26899	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:120:2,118:2:64:118:4223:-374.143,-30.0449,0	1/1:141:1,140:1:36:140:5016:-447.98,-38.847,0	1/1:37:1,36:1:32:36:1296:-113.745,-7.9388,0	.:.:.:.:.:.:.:.	0/1:104:45,59:45:1612:59:2124:-160.118,0,-114.061	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.874	1/1:109:0,109:0:0:109:3912:-352.248,-32.8123,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:30:0,30:0:0:30:1072:-96.7908,-9.0309,0	1/1:108:0,108:0:0:108:3833:-345.157,-32.5112,0	1/1:136:0,136:0:0:136:4842:-435.909,-40.9401,0	0/1:150:65,85:65:2314:85:3036:-228.313,0,-162.994	1/1:113:0,113:0:0:113:4056:-365.207,-34.0164,0	1/1:120:0,120:0:0:120:4293:-386.542,-36.1236,0	1/1:167:0,167:0:0:167:5965:-536.953,-50.272,0	1/1:7:0,7:0:0:7:252:-23.0286,-2.10721,0	0/1:102:48,54:48:1703:54:1929:-143.18,0,-122.843	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:14:5,9:5:180:9:324:-25.2832,0,-12.3376	0/1:123:63,60:63:2256:60:2156:-157.274,0,-165.957	1/1:27:0,27:0:0:27:968:-87.437,-8.12781,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:30:0,30:0:0:30:1080:-97.5086,-9.0309,0	1/1:58:1,57:1:36:57:2052:-181.353,-13.8615,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:169:0,169:0:0:169:6052:-544.783,-50.8741,0	1/1:94:2,92:2:68:92:3304:-291.119,-21.8391,0	0/1:32:21,11:21:743:11:396:-26.3498,0,-57.5586	1/1:90:0,90:0:0:90:3219:-289.929,-27.0927,0	1/1:126:0,126:0:0:126:4516:-406.607,-37.9298,0	1/1:69:0,69:0:0:69:2472:-222.733,-20.7711,0	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	1/1:63:0,63:0:0:63:2264:-203.999,-18.9649,0	0/1:54:6,48:6:212:48:1728:-139.55,0,-3.00906	0/1:12:4,8:4:144:8:280:-21.9269,0,-9.70126	1/1:93:0,93:0:0:93:3320:-298.821,-27.9958,0	0/1:29:12,16:12:432:16:565:-42.3813,0,-30.4329	1/1:141:0,141:0:0:141:5044:-454.053,-42.4452,0	1/1:139:0,139:0:0:139:4992:-449.426,-41.8432,0	0/1:71:28,43:28:995:43:1544:-117.877,0,-68.4909	1/1:65:2,62:2:72:62:2228:-193.952,-12.7938,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:74:0,74:0:0:74:2652:-238.698,-22.2762,0	0/1:42:21,21:21:744:21:752:-55.363,0,-54.6402	1/1:164:0,164:0:0:164:5859:-527.388,-49.3689,0	1/1:67:0,67:0:0:67:2400:-216.254,-20.169,0	1/1:19:1,18:1:32:18:648:-55.4526,-2.52026,0	1/1:37:1,36:1:36:36:1277:-111.634,-7.53984,0	1/1:84:0,84:0:0:84:2996:-269.375,-25.2865,0	1/1:35:1,34:1:36:34:1224:-106.865,-6.93778,0	0/1:33:14,19:14:482:19:684:-51.9563,0,-33.7721	0/1:34:15,19:15:540:19:680:-51.2908,0,-38.6972	1/1:5:0,5:0:0:5:180:-16.5505,-1.50515,0	0/1:34:18,16:18:644:16:568:-41.2144,0,-48.0525	0/1:33:20,13:20:699:13:464:-32.1634,0,-53.2975	1/1:102:0,102:0:0:102:3643:-328.071,-30.7051,0	1/1:46:2,44:2:72:44:1565:-134.301,-7.01066,0
chr08	20973613	.	TCG	TCA,GCA	140559	PASS	AB=0.5393,0.458105;ABP=20.2486,22.4787;AC=163,22;AF=0.876344,0.11828;AN=186;AO=5696,589;CIGAR=2M1X,1X1M1X;DP=6326;DPB=6326;DPRA=0,0.958994;EPP=12354.4,1282.01;EPPR=61.6401;GTI=3;LEN=1,3;MEANALT=1.39785,2.16;MQM=59.8545,59.7199;MQMR=59;NS=93;NUMALT=2;ODDS=0.5742;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=203799,20649;QR=923;RO=27;RPL=5694,589;RPP=12354.4,1282.01;RPPR=61.6401;RPR=2,0;RUN=1,1;SAF=5696,589;SAP=12371.7,1282.01;SAR=0,0;SRF=27;SRP=61.6401;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33,0:0:0:33,0:1172,0:-105.781,-9.93399,0,-105.781,-9.93399,-105.781	1/1:106:0,105,0:0:0:105,0:3760,0:-338.318,-31.6082,0,-338.318,-31.6082,-338.318	1/1:102:0,102,0:0:0:102,0:3631,0:-326.963,-30.7051,0,-326.963,-30.7051,-326.963	1/1:224:0,224,0:0:0:224,0:8035,0:-723.159,-67.4307,0,-723.159,-67.4307,-723.159	1/1:48:0,48,0:0:0:48,0:1713,0:-154.451,-14.4494,0,-154.451,-14.4494,-154.451	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:103:0,103,0:0:0:103,0:3691,0:-332.389,-31.0061,0,-332.389,-31.0061,-332.389	1/1:96:0,96,0:0:0:96,0:3436,0:-309.44,-28.8989,0,-309.44,-28.8989,-309.44	1/1:61:0,61,0:0:0:61,0:2176,0:-196.095,-18.3628,0,-196.095,-18.3628,-196.095	1/1:48:0,47,0:0:0:47,0:1688,0:-151.955,-14.1484,0,-151.955,-14.1484,-151.955	1/1:18:0,18,0:0:0:18,0:644,0:-58.2878,-5.41854,0,-58.2878,-5.41854,-58.2878	1/1:45:0,45,0:0:0:45,0:1592,0:-143.535,-13.5464,0,-143.535,-13.5464,-143.535	1/1:36:2,34,0:2:62:34,0:1215,0:-103.767,-4.94837,0,-104.369,-10.235,-109.343	1/1:27:2,25,0:2:72:25,0:896,0:-74.1221,-1.29109,0,-74.7241,-7.52575,-80.5991	1/1:32:3,29,0:3:98:29,0:1036,0:-84.4089,-0.489175,0,-85.312,-8.72987,-93.2233	1/1:32:1,31,0:1:33:31,0:1108,0:-96.7303,-6.33383,0,-97.0313,-9.33193,-99.6987	1/1:26:0,26,0:0:0:26,0:924,0:-83.4763,-7.82678,0,-83.4763,-7.82678,-83.4763	1/1:24:0,24,0:0:0:24,0:860,0:-77.7185,-7.22472,0,-77.7185,-7.22472,-77.7185	1/1:10:0,10,0:0:0:10,0:351,0:-31.9267,-3.0103,0,-31.9267,-3.0103,-31.9267	1/1:65:0,65,0:0:0:65,0:2336,0:-210.498,-19.567,0,-210.498,-19.567,-210.498	1/1:117:0,117,0:0:0:117,0:4183,0:-376.649,-35.2205,0,-376.649,-35.2205,-376.649	1/1:102:0,102,0:0:0:102,0:3652,0:-328.884,-30.7051,0,-328.884,-30.7051,-328.884	1/1:51:0,51,0:0:0:51,0:1836,0:-165.52,-15.3525,0,-165.52,-15.3525,-165.52	1/2:82:0,52,29:0:0:52,29:1868,1031:-236.485,-84.0976,-68.444,-152.471,0,-143.741	1/1:76:0,76,0:0:0:76,0:2713,0:-244.407,-22.8783,0,-244.407,-22.8783,-244.407	1/2:245:0,145,99:0:0:145,99:5196,3455:-704.764,-280.995,-237.346,-423.761,0,-393.959	1/1:158:0,158,0:0:0:158,0:5672,0:-510.589,-47.5627,0,-510.589,-47.5627,-510.589	1/2:18:1,9,8:1:36:9,8:324,268:-44.8888,-18.7398,-18.9707,-23.4993,0,-24.0285	1/1:229:0,227,1:0:0:227,1:8148,28:-733.012,-68.3338,0,-730.793,-66.155,-730.492	1/1:108:0,108,0:0:0:108,0:3859,0:-347.476,-32.5112,0,-347.476,-32.5112,-347.476	1/2:83:0,36,47:0:0:36,47:1296,1686:-243.626,-137.878,-127.041,-106.107,0,-91.9584	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/1:12:0,12,0:0:0:12,0:419,0:-38.0427,-3.61236,0,-38.0427,-3.61236,-38.0427	1/2:6:0,3,3:0:0:3,3:108,105:-17.7067,-8.89288,-7.98979,-9.16862,0,-8.26553	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/1:118:2,115,0:2:72:115,0:4119,0:-364.029,-28.7436,0,-364.631,-34.6185,-370.505	1/1:142:0,142,0:0:0:142,0:5081,0:-457.424,-42.7463,0,-457.424,-42.7463,-457.424	1/1:35:0,35,0:0:0:35,0:1252,0:-112.985,-10.5361,0,-112.985,-10.5361,-112.985	.:.:.:.:.:.:.:.	1/2:106:0,60,46:0:0:60,46:2139,1582:-302.952,-128.589,-110.527,-174.712,0,-160.865	1/2:14:0,8,6:0:0:8,6:288,216:-41.4806,-17.9812,-15.573,-23.8592,0,-22.053	1/1:107:0,106,0:0:0:106,0:3773,0:-339.476,-31.9092,0,-339.476,-31.9092,-339.476	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/1:33:0,32,0:0:0:32,0:1136,0:-102.143,-9.63296,0,-102.143,-9.63296,-102.143	1/1:107:0,107,0:0:0:107,0:3848,0:-346.506,-32.2102,0,-346.506,-32.2102,-346.506	1/1:133:0,131,0:0:0:131,0:4702,0:-422.923,-39.4349,0,-422.923,-39.4349,-422.923	1/2:150:0,83,66:0:0:83,66:2978,2338:-433.272,-190.363,-165.378,-242.905,0,-223.037	1/1:114:0,114,0:0:0:114,0:4056,0:-365.218,-34.3174,0,-365.218,-34.3174,-365.218	1/1:120:0,118,0:0:0:118,0:4244,0:-381.778,-35.5215,0,-381.778,-35.5215,-381.778	1/1:167:0,167,0:0:0:167,0:5963,0:-536.765,-50.272,0,-536.765,-50.272,-536.765	1/1:7:0,7,0:0:0:7,0:252,0:-23.0286,-2.10721,0,-23.0286,-2.10721,-23.0286	1/2:101:0,52,49:0:0:52,49:1864,1721:-292.445,-140.417,-124.763,-152.383,0,-137.632	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:14:0,9,5:0:0:9,5:324,180:-41.4755,-15.0469,-12.3376,-26.7883,0,-25.2832	1/2:124:0,59,65:0:0:59,65:2100,2246:-353.808,-182.76,-164.999,-171.399,0,-151.832	1/1:28:0,28,0:0:0:28,0:1000,0:-90.315,-8.42884,0,-90.315,-8.42884,-90.315	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:14:0,14,0:0:0: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chr08	20973800	.	T	A	118475	PASS	AB=0.576715;ABP=69.3114;AC=166;AF=0.882979;AN=188;AO=5293;CIGAR=1X;DP=5895;DPB=5895;DPRA=0;EPP=11332.2;EPPR=1292.88;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9771;MQMR=57.5401;NS=94;NUMALT=1;ODDS=9.90633;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189189;QR=21247;RO=598;RPL=5274;RPP=11332.2;RPPR=1292.88;RPR=19;RUN=1;SAF=0;SAP=11496.6;SAR=5293;SRF=0;SRP=1301.55;SRR=598;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	1/1:61:0,61:0:0:61:2172:-195.747,-18.3628,0	1/1:58:0,58:0:0:58:2070:-186.571,-17.4597,0	1/1:97:0,97:0:0:97:3441:-309.902,-29.1999,0	1/1:49:2,47:2:72:47:1680:-146.288,-9.55169,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:86:0,86:0:0:86:3063:-275.898,-25.8886,0	1/1:80:0,80:0:0:80:2858:-257.453,-24.0824,0	1/1:57:0,57:0:0:57:2030:-182.971,-17.1587,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:54:3,51:3:108:51:1836:-157.324,-8.05854,0	1/1:39:3,36:3:104:36:1283:-106.326,-2.29324,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:55:0,55:0:0:55:1958:-176.493,-16.5567,0	1/1:38:2,36:2:72:36:1281:-109.928,-5.77571,0	1/1:26:0,26:0:0:26:914:-82.5747,-7.82678,0	1/1:50:0,50:0:0:50:1787:-161.112,-15.0515,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:99:1,98:1:36:98:3500:-312.228,-26.8212,0	1/1:118:0,118:0:0:118:4236:-381.418,-35.5215,0	1/1:84:1,83:1:36:83:2973:-264.613,-22.0989,0	1/1:75:0,75:0:0:75:2686:-241.984,-22.5773,0	0/1:110:53,57:53:1862:57:2048:-151.478,0,-134.742	1/1:34:0,34:0:0:34:1205:-108.754,-10.235,0	0/1:228:95,133:95:3384:133:4744:-358.484,0,-236.142	1/1:121:4,117:4:144:117:4162:-363.832,-25.5033,0	0/1:22:11,11:11:392:11:396:-29.3601,0,-27.6523	1/1:116:1,115:1:36:115:4121:-367.885,-31.7319,0	1/1:85:4,81:4:144:81:2874:-245.583,-12.2739,0	0/1:66:30,36:30:1080:36:1284:-95.9954,0,-77.6453	1/1:5:0,4:0:0:4:144:-12.9538,-1.20412,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:183:2,181:2:72:181:6487:-578.286,-49.4609,0	1/1:115:0,115:0:0:115:4103:-369.455,-34.6185,0	1/1:49:1,48:1:36:48:1724:-151.991,-11.296,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:73:32,41:32:1144:41:1452:-108.998,0,-81.2943	0/1:26:8,18:8:288:18:639:-50.0115,0,-16.5229	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	0/1:57:7,50:7:252:50:1783:-143.593,0,-1.9181	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:67:0,67:0:0:67:2401:-216.346,-20.169,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:87:37,50:37:1316:50:1782:-134.472,0,-92.5522	1/1:80:0,80:0:0:80:2850:-256.738,-24.0824,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:122:0,122:0:0:122:4359:-392.485,-36.7257,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:103:33,70:33:1161:70:2491:-193.437,0,-73.7886	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:9:5,4:5:161:4:144:-10.6043,0,-12.0973	0/1:67:24,42:24:845:42:1495:-114.617,0,-56.1396	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:79:0,79:0:0:79:2822:-254.219,-23.7814,0	1/1:105:5,100:5:180:100:3530:-303.616,-17.3465,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:134:0,134:0:0:134:4783:-430.626,-40.338,0	1/1:183:3,180:3:100:180:6468:-573.778,-46.6639,0	0/1:30:9,21:9:320:21:756:-59.3363,0,-20.1115	1/1:50:1,49:1:36:49:1736:-153.134,-11.6639,0	1/1:124:1,123:1:21:123:4418:-395.689,-35.2278,0	1/1:83:1,82:1:36:82:2936:-260.873,-21.3872,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:95:5,90:5:180:90:3185:-273.23,-14.9557,0	0/1:12:8,4:8:269:4:144:-9.70126,0,-20.9238	1/1:37:0,36:0:0:36:1269:-114.151,-10.8371,0	0/1:26:9,17:9:320:17:608:-47.2252,0,-21.3156	1/1:187:0,187:0:0:187:6696:-602.714,-56.2926,0	1/1:114:0,114:0:0:114:4078:-367.206,-34.3174,0	0/1:68:28,40:28:1000:40:1431:-108.602,0,-69.8453	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:38:14,24:14:500:24:855:-65.831,0,-33.897	1/1:137:2,135:2:72:135:4852:-429.995,-34.4044,0	1/1:106:4,102:4:144:102:3642:-316.955,-20.8804,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:30:0,29:0:0:29:1040:-93.5546,-8.72987,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:28:0,28:0:0:28:999:-90.2245,-8.42884,0	0/1:54:27,27:27:960:27:968:-71.1817,0,-70.4607	0/1:51:27,24:27:960:24:864:-62.73,0,-71.3637	1/1:48:4,44:4:144:44:1572:-130.463,-3.14046,0	0/1:101:48,53:48:1720:53:1883:-139.344,0,-124.122	0/1:48:29,19:29:1036:19:684:-47.4409,0,-79.1045	1/1:73:0,73:0:0:73:2604:-234.609,-21.9752,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0
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chr08	22821140	.	C	T	149933	PASS	AB=0.492984;ABP=3.71116;AC=162;AF=0.880435;AN=184;AO=6709;CIGAR=1X;DP=7553;DPB=7553;DPRA=0;EPP=14562.7;EPPR=1814.06;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9498;MQMR=59.9537;NS=92;NUMALT=1;ODDS=5.63531;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=239859;QR=30100;RO=842;RPL=0;RPP=14571.4;RPPR=1814.06;RPR=6709;RUN=1;SAF=6708;SAP=14562.7;SAR=1;SRF=842;SRP=1831.39;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	1/1:122:0,122:0:0:122:4361:-392.663,-36.7257,0	1/1:108:0,108:0:0:108:3833:-345.164,-32.5112,0	1/1:143:0,143:0:0:143:5124:-461.3,-43.0473,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:76:0,76:0:0:76:2705:-243.693,-22.8783,0	1/1:70:2,68:2:72:68:2436:-212.658,-14.2354,0	1/1:133:0,133:0:0:133:4761:-428.646,-40.037,0	1/1:102:0,102:0:0:102:3641:-327.894,-30.7051,0	1/1:97:0,97:0:0:97:3435:-309.361,-29.1999,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	1/1:53:0,53:0:0:53:1896:-170.9,-15.9546,0	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	1/1:66:0,66:0:0:66:2370:-212.929,-19.868,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:88:0,88:0:0:88:3156:-284.075,-26.4906,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:162:0,162:0:0:162:5820:-523.897,-48.7669,0	1/1:130:0,130:0:0:130:4652:-418.842,-39.1339,0	1/1:99:0,99:0:0:99:3537:-318.538,-29.802,0	1/1:66:0,65:0:0:65:2306:-207.439,-19.567,0	0/1:140:61,79:61:2184:79:2832:-212.974,0,-154.682	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:226:93,133:93:3332:133:4752:-359.799,0,-232.065	1/1:120:0,120:0:0:120:4308:-387.891,-36.1236,0	0/1:54:23,31:23:824:31:1116:-84.4961,0,-58.2277	1/1:169:0,169:0:0:169:6047:-544.262,-50.8741,0	1/1:118:3,115:3:108:115:4102:-359.279,-25.4464,0	0/1:101:62,39:62:2216:39:1389:-94.9029,0,-169.301	0/1:9:1,8:1:36:8:269:-21.8269,0,-0.889005	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	.:.:.:.:.:.:.:.	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:220:0,220:0:0:220:7869:-708.234,-66.2266,0	1/1:57:0,57:0:0:57:2020:-182.071,-17.1587,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	.:.:.:.:.:.:.:.	0/1:111:53,58:53:1904:58:2071:-153.246,0,-138.223	0/1:34:21,13:21:756:13:468:-32.2246,0,-58.1322	1/1:180:0,180:0:0:180:6415:-577.437,-54.1854,0	1/1:105:0,105:0:0:105:3774:-339.829,-31.6082,0	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	1/1:75:0,75:0:0:75:2684:-241.804,-22.5773,0	1/1:102:0,102:0:0:102:3653:-328.972,-30.7051,0	0/1:80:45,35:45:1612:35:1256:-89.2629,0,-121.288	1/1:85:1,84:1:36:84:2998:-266.452,-21.9893,0	1/1:87:1,86:1:21:86:3075:-274.719,-24.0897,0	1/1:99:0,99:0:0:99:3507:-315.801,-29.802,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:104:50,54:50:1777:54:1932:-142.849,0,-128.904	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:63:29,34:29:1044:34:1199:-89.2499,0,-75.3099	1/1:42:0,42:0:0:42:1481:-133.582,-12.6433,0	1/1:3:0,3:0:0:3:108:-10.0742,-0.90309,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:37:0,36:0:0:36:1288:-116.01,-10.8371,0	1/1:96:0,96:0:0:96:3443:-310.082,-28.8989,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:103:0,103:0:0:103:3671:-330.502,-31.0061,0	1/1:97:1,96:1:36:96:3414:-303.875,-25.6016,0	0/1:53:21,32:21:752:32:1152:-88.0356,0,-52.0517	1/1:42:0,42:0:0:42:1492:-134.575,-12.6433,0	1/1:116:0,116:0:0:116:4149:-373.593,-34.9195,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:65:0,65:0:0:65:2308:-207.981,-19.567,0	1/1:132:0,132:0:0:132:4717:-424.688,-39.736,0	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	0/1:55:31,24:31:1104:24:860:-61.058,0,-83.114	1/1:132:0,132:0:0:132:4685:-421.81,-39.736,0	1/1:104:0,104:0:0:104:3719:-334.911,-31.3071,0	0/1:158:88,70:88:3135:70:2514:-178.949,0,-234.814	1/1:131:0,131:0:0:131:4705:-423.607,-39.4349,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0	0/1:106:55,51:55:1959:51:1832:-133.252,0,-144.676	1/1:135:0,135:0:0:135:4832:-435.034,-40.6391,0	1/1:98:0,98:0:0:98:3515:-316.555,-29.5009,0	1/1:76:0,76:0:0:76:2712:-244.315,-22.8783,0	1/1:121:0,121:0:0:121:4339:-390.684,-36.4246,0	1/1:176:2,174:2:72:174:6213:-552.427,-46.1446,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:89:40,49:40:1428:49:1739:-130.001,0,-102.026	0/1:75:39,36:39:1404:36:1292:-94.0065,0,-104.082	1/1:26:0,26:0:0:26:921:-83.2052,-7.82678,0	0/1:62:36,26:36:1296:26:928:-65.1744,0,-98.2801	0/1:96:68,28:68:2420:28:1008:-62.1375,0,-189.158	1/1:70:0,70:0:0:70:2493:-224.623,-21.0721,0	1/1:133:1,132:1:36:132:4727:-423.5,-37.9504,0
chr08	22821146	.	T	A	151524	PASS	AB=0.502143;ABP=3.07546;AC=162;AF=0.880435;AN=184;AO=6749;CIGAR=1X;DP=7576;DPB=7576;DPRA=0;EPP=14614.9;EPPR=1746.87;GTI=1;LEN=1;MEANALT=1.07609;MQM=59.9464;MQMR=59.9524;NS=92;NUMALT=1;ODDS=4.69206;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241678;QR=29261;RO=819;RPL=4;RPP=14623.6;RPPR=1746.87;RPR=6745;RUN=1;SAF=6748;SAP=14649.6;SAR=1;SRF=819;SRP=1781.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:123:0,123:0:0:123:4416:-397.611,-37.0267,0	1/1:106:0,106:0:0:106:3782:-340.58,-31.9092,0	1/1:145:0,145:0:0:145:5188:-467.057,-43.6494,0	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:78:0,78:0:0:78:2786:-250.98,-23.4803,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:136:0,136:0:0:136:4853:-436.924,-40.9401,0	1/1:99:0,99:0:0:99:3526:-317.55,-29.802,0	1/1:96:0,96:0:0:96:3421:-308.104,-28.8989,0	1/1:62:0,61:0:0:61:2188:-196.826,-18.3628,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:53:0,53:0:0:53:1908:-171.98,-15.9546,0	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	1/1:65:0,65:0:0:65:2319:-208.34,-19.567,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:88:0,88:0:0:88:3146:-283.354,-26.4906,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:166:0,166:0:0:166:5941:-534.796,-49.971,0	1/1:132:0,132:0:0:132:4732:-426.038,-39.736,0	1/1:100:0,100:0:0:100:3596:-323.845,-30.103,0	1/1:64:0,64:0:0:64:2277:-205.191,-19.2659,0	0/1:140:60,80:60:2144:80:2873:-216.662,0,-151.084	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:223:91,132:91:3251:132:4723:-358.095,0,-225.681	1/1:124:0,124:0:0:124:4448:-400.485,-37.3277,0	0/1:54:22,32:22:788:32:1152:-87.7345,0,-54.9892	1/1:168:0,168:0:0:168:6030:-542.772,-50.573,0	1/1:117:3,114:3:108:114:4096:-358.74,-25.1453,0	0/1:102:61,41:61:2163:41:1472:-102.071,0,-164.232	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	.:.:.:.:.:.:.:.	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:223:0,223:0:0:223:7984:-718.58,-67.1297,0	1/1:58:0,58:0:0:58:2076:-187.102,-17.4597,0	1/1:64:0,63:0:0:63:2256:-202.943,-18.9649,0	.:.:.:.:.:.:.:.	0/1:111:51,60:51:1832:60:2152:-160.533,0,-131.746	0/1:33:20,13:20:716:13:468:-32.5257,0,-54.8337	1/1:180:0,178:0:0:178:6374:-573.387,-53.5833,0	1/1:105:0,105:0:0:105:3772:-339.65,-31.6082,0	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	1/1:72:0,72:0:0:72:2584:-232.808,-21.6742,0	1/1:100:0,100:0:0:100:3580:-322.407,-30.103,0	0/1:76:41,35:41:1455:35:1256:-90.467,0,-108.367	1/1:85:1,84:1:36:84:2998:-266.452,-21.9893,0	1/1:89:0,89:0:0:89:3189:-287.125,-26.7917,0	1/1:103:0,102:0:0:102:3656:-328.639,-30.7051,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:104:50,54:50:1800:54:1940:-143.569,0,-130.975	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:65:29,36:29:1040:36:1284:-96.2965,0,-74.3474	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:3:0,3:0:0:3:108:-10.0742,-0.90309,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:37:0,37:0:0:37:1321:-119.191,-11.1381,0	1/1:97:0,97:0:0:97:3488:-314.13,-29.1999,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:102:0,102:0:0:102:3649:-328.523,-30.7051,0	1/1:95:1,94:1:36:94:3365:-299.468,-24.9996,0	0/1:53:21,32:21:756:32:1152:-88.0356,0,-52.4126	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:117:1,116:1:36:116:4126:-367.926,-31.6222,0	1/1:40:0,40:0:0:40:1417:-127.825,-12.0412,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:65:0,65:0:0:65:2326:-209.6,-19.567,0	1/1:133:0,133:0:0:133:4773:-429.723,-40.037,0	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:52:28,24:28:996:24:856:-61.6003,0,-74.3013	1/1:133:0,133:0:0:133:4720:-424.957,-40.037,0	1/1:105:0,105:0:0:105:3742:-336.967,-31.6082,0	0/1:157:85,71:85:3044:71:2544:-181.89,0,-226.869	1/1:131:0,131:0:0:131:4678:-421.18,-39.4349,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:106:0,106:0:0:106:3812:-343.276,-31.9092,0	0/1:105:54,50:54:1915:50:1792:-129.896,0,-140.96	1/1:137:0,137:0:0:137:4908:-441.871,-41.2411,0	1/1:100:0,100:0:0:100:3580:-322.404,-30.103,0	1/1:75:0,75:0:0:75:2681:-241.526,-22.5773,0	1/1:120:0,120:0:0:120:4312:-388.255,-36.1236,0	1/1:176:2,174:2:72:174:6247:-555.476,-46.1446,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:92:40,51:40:1423:51:1823:-136.597,0,-100.613	0/1:74:37,37:37:1328:37:1312:-96.1036,0,-97.546	1/1:27:0,27:0:0:27:963:-86.9859,-8.12781,0	0/1:62:36,26:36:1287:26:936:-65.8956,0,-97.4689	0/1:97:67,30:67:2391:30:1074:-67.7719,0,-186.247	1/1:69:0,69:0:0:69:2452:-220.934,-20.7711,0	1/1:134:1,133:1:36:133:4767:-427.1,-38.2514,0
chr08	22821182	.	T	A	345972	PASS	AB=0.49306;ABP=4.27615;AC=164;AF=0.88172;AN=186;AO=12222;CIGAR=1X;DP=13775;DPB=13775;DPRA=0;EPP=26482;EPPR=3368.79;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9701;MQMR=60;NS=93;NUMALT=1;ODDS=5.41556;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=436630;QR=54991;RO=1550;RPL=6701;RPP=250.397;RPPR=9.11284;RPR=5521;RUN=1;SAF=6694;SAP=244.561;SAR=5528;SRF=808;SRP=9.11284;SRR=742;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:111:0,111:0:0:111:3957:-356.322,-33.4143,0	1/1:183:0,183:0:0:183:6558:-590.299,-55.0885,0	1/1:223:0,223:0:0:223:7979:-718.124,-67.1297,0	1/1:255:0,255:0:0:255:9090:-818.077,-76.7627,0	1/1:124:0,124:0:0:124:4430:-398.871,-37.3277,0	1/1:107:0,107:0:0:107:3835:-345.345,-32.2102,0	1/1:100:0,100:0:0:100:3585:-322.856,-30.103,0	1/1:236:1,235:1:36:235:8385:-751.057,-67.4448,0	1/1:156:0,156:0:0:156:5543:-498.997,-46.9607,0	1/1:170:0,170:0:0:170:6063:-545.769,-51.1751,0	1/1:135:0,135:0:0:135:4844:-436.113,-40.6391,0	1/1:165:0,165:0:0:165:5879:-529.222,-49.67,0	1/1:118:0,118:0:0:118:4225:-380.429,-35.5215,0	1/1:165:0,165:0:0:165:5897:-530.84,-49.67,0	1/1:130:0,130:0:0:130:4660:-418.783,-39.1339,0	1/1:110:0,109:0:0:109:3897:-350.563,-32.8123,0	1/1:125:0,125:0:0:125:4480:-403.369,-37.6288,0	1/1:111:0,111:0:0:111:3965:-357.039,-33.4143,0	1/1:75:0,75:0:0:75:2663:-239.887,-22.5773,0	1/1:297:0,297:0:0:297:10635:-957.053,-89.4059,0	1/1:252:0,252:0:0:252:9021:-811.868,-75.8596,0	1/1:120:0,120:0:0:120:4277:-385.107,-36.1236,0	1/1:105:0,105:0:0:105:3734:-336.26,-31.6082,0	0/1:179:85,94:85:2971:94:3332:-246.213,0,-213.74	1/1:179:0,179:0:0:179:6392:-575.369,-53.8844,0	0/1:400:185,214:185:6571:214:7623:-565.635,0,-471.002	1/1:268:0,268:0:0:268:9564:-860.085,-80.676,0	0/1:86:40,46:40:1413:46:1652:-123.08,0,-101.577	1/1:353:1,352:1:36:352:12590:-1129.32,-102.665,0	1/1:191:5,186:5:180:186:6642:-581.298,-40.9447,0	0/1:139:81,58:81:2834:58:2039:-141.936,0,-213.456	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:349:0,349:0:0:349:12479:-1122.94,-105.059,0	1/1:121:0,121:0:0:121:4330:-389.866,-36.4246,0	1/1:117:0,117:0:0:117:4187:-377.011,-35.2205,0	.:.:.:.:.:.:.:.	0/1:199:85,114:85:3019:114:4084:-307.841,0,-212.037	0/1:58:33,25:33:1166:25:896:-63.5006,0,-87.7858	1/1:303:0,303:0:0:303:10846:-976.04,-91.2121,0	1/1:161:0,161:0:0:161:5772:-519.594,-48.4658,0	1/1:109:0,109:0:0:109:3889:-350.204,-32.8123,0	1/1:173:0,173:0:0:173:6173:-555.667,-52.0782,0	1/1:185:0,185:0:0:185:6617:-595.609,-55.6906,0	0/1:224:120,104:120:4279:104:3725:-268.019,0,-317.858	1/1:150:1,149:1:36:149:5314:-474.796,-41.5562,0	1/1:197:0,197:0:0:197:7025:-631.689,-59.3029,0	1/1:209:0,209:0:0:209:7467:-671.989,-62.9153,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:193:99,94:99:3552:94:3372:-245.597,0,-261.789	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:172:95,77:95:3404:77:2746:-195.606,0,-254.797	1/1:66:0,66:0:0:66:2349:-211.669,-19.868,0	1/1:3:0,3:0:0:3:105:-9.7955,-0.90309,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	1/1:203:0,203:0:0:203:7266:-653.991,-61.1091,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:185:0,185:0:0:185:6628:-596.106,-55.6906,0	1/1:209:4,205:4:140:205:7322:-646.085,-49.9707,0	0/1:120:47,73:47:1683:73:2620:-199.924,0,-115.633	1/1:118:0,118:0:0:118:4213:-379.28,-35.5215,0	1/1:218:1,217:1:36:217:7737:-692.767,-62.0263,0	1/1:170:1,169:1:36:169:6027:-538.88,-47.5768,0	1/1:59:0,59:0:0:59:2098:-189.088,-17.7608,0	1/1:78:0,78:0:0:78:2763:-248.911,-23.4803,0	1/1:171:0,171:0:0:171:6120:-550.897,-51.4761,0	0/1:37:17,20:17:608:20:716:-53.6296,0,-43.9139	1/1:104:0,104:0:0:104:3703:-333.473,-31.3071,0	0/1:117:67,50:67:2392:50:1785:-125.687,0,-180.317	1/1:208:0,208:0:0:208:7396:-665.689,-62.6142,0	1/1:170:0,170:0:0:170:6082:-547.469,-51.1751,0	0/1:294:147,147:147:5202:147:5262:-385.212,0,-379.819	1/1:203:0,203:0:0:203:7283:-655.519,-61.1091,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:204:0,204:0:0:204:7308:-657.767,-61.4101,0	0/1:201:97,104:97:3414:104:3717:-274.224,0,-246.966	1/1:283:0,283:0:0:283:10108:-909.653,-85.1915,0	1/1:166:0,166:0:0:166:5950:-535.605,-49.971,0	1/1:124:0,124:0:0:124:4417:-397.694,-37.3277,0	1/1:168:0,168:0:0:168:5991:-539.294,-50.573,0	1/1:298:3,294:3:108:294:10483:-933.308,-79.6906,0	1/1:58:0,58:0:0:58:2080:-187.442,-17.4597,0	0/1:152:75,77:75:2624:77:2734:-200.546,0,-190.649	0/1:141:73,68:73:2591:68:2407:-174.44,0,-190.994	1/1:71:0,71:0:0:71:2556:-230.29,-21.3731,0	0/1:136:75,61:75:2661:61:2162:-153.906,0,-198.795	0/1:147:99,48:99:3531:48:1708:-109.754,0,-273.748	1/1:126:0,126:0:0:126:4507:-405.798,-37.9298,0	1/1:236:0,236:0:0:236:8438:-759.42,-71.0431,0
chr08	22821245	.	G	A	16118.2	PASS	AB=0.484605;ABP=6.08583;AC=21;AF=0.111702;AN=188;AO=737;CIGAR=1X;DP=7406;DPB=7406;DPRA=1.11291;EPP=34.2683;EPPR=140.28;GTI=1;LEN=1;MEANALT=1.1;MQM=59.9634;MQMR=59.9737;NS=94;NUMALT=1;ODDS=2.88815;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26234;QR=237413;RO=6663;RPL=2;RPP=1586.06;RPPR=14289.7;RPR=735;RUN=1;SAF=319;SAP=31.8876;SAR=418;SRF=3028;SRP=123.088;SRR=3635;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1230:0:0:0,-10.536,-111.002	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.378	0/0:153:152,1:152:5378:1:36:0,-42.4593,-480.551	0/0:119:119,0:119:4224:0:0:0,-35.8226,-380.339	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/0:63:63,0:63:2190:0:0:0,-18.9649,-197.364	0/0:129:129,0:129:4600:0:0:0,-38.8329,-414.164	0/0:89:89,0:89:3163:0:0:0,-26.7917,-284.893	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:143:143,0:143:5104:0:0:0,-43.0473,-459.505	0/0:170:170,0:170:6064:0:0:0,-51.1751,-545.83	0/0:127:127,0:127:4539:0:0:0,-38.2308,-408.677	0/0:161:160,0:160:5644:0:0:0,-48.1648,-507.714	0/0:130:130,0:130:4652:0:0:0,-39.1339,-418.842	0/0:117:117,0:117:4140:0:0:0,-35.2205,-372.779	0/0:141:141,0:141:5055:0:0:0,-42.4452,-455.094	0/0:78:77,1:77:2733:1:36:0,-19.8821,-242.614	0/0:94:94,0:94:3336:0:0:0,-28.2968,-300.457	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.607	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:31:21,10:21:728:10:360:-23.4124,0,-56.5058	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.391	0/1:122:55,67:55:1964:67:2372:-177.011,0,-140.31	0/0:91:90,1:90:3223:1:36:0,-23.7955,-286.693	0/1:56:24,32:24:864:32:1143:-86.3164,0,-61.2245	0/0:106:106,0:106:3775:0:0:0,-31.9092,-339.95	0/0:70:67,1:67:2400:1:36:0,-17.2316,-212.659	0/1:34:14,20:14:500:20:712:-54.1716,0,-35.1012	0/1:7:4,3:4:140:3:99:-7.12937,0,-10.8374	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:290:289,0:289:10334:0:0:0,-86.9977,-929.623	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.872	0/0:128:128,0:128:4554:0:0:0,-38.5318,-410.028	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:105:54,51:54:1932:51:1813:-131.841,0,-142.548	0/1:61:31,30:31:1112:30:1072:-78.4296,0,-82.0285	0/0:70:70,0:70:2460:0:0:0,-21.0721,-220.465	0/0:108:108,0:108:3844:0:0:0,-32.5112,-346.156	0/0:102:102,0:102:3616:0:0:0,-30.7051,-325.646	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:87:87,0:87:3098:0:0:0,-26.1896,-279.047	0/1:75:42,33:42:1500:33:1176:-83.5705,0,-112.7	0/0:62:61,1:61:2176:1:36:0,-15.0656,-192.508	0/0:82:82,0:82:2900:0:0:0,-24.6845,-261.236	0/0:65:65,0:65:2297:0:0:0,-19.5669,-206.99	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:67:39,28:39:1400:28:1000:-70.1464,0,-106.13	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:78:45,33:45:1599:33:1178:-82.8469,0,-120.589	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:177:176,1:176:6293:1:36:0,-49.684,-562.864	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.772	0/0:118:114,4:114:4072:4:144:0,-22.2079,-353.353	0/1:49:22,27:22:792:27:956:-71.6053,0,-56.8552	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:56:55,0:55:1961:0:0:0,-16.5566,-176.502	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.191	0/0:113:113,0:113:4012:0:0:0,-34.0164,-361.27	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/0:137:137,0:137:4891:0:0:0,-41.2411,-440.343	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:79:41,37:41:1476:37:1309:-94.2695,0,-109.296	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:66:66,0:66:2354:0:0:0,-19.868,-212.118	0/1:90:56,34:56:2004:34:1201:-81.301,0,-153.541	0/0:86:84,2:84:3003:2:72:0,-19.0519,-263.664	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:72:72,0:72:2565:0:0:0,-21.6742,-231.099	0/1:77:49,28:49:1729:28:996:-66.7618,0,-132.713	0/0:88:88,0:88:3115:0:0:0,-26.4906,-280.576	0/0:124:124,0:124:4427:0:0:0,-37.3277,-398.602	0/0:128:128,0:128:4570:0:0:0,-38.5318,-411.466	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.827	0/0:210:209,1:209:7426:1:36:0,-59.618,-664.791	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:96:43,53:43:1530:53:1904:-142.739,0,-109.093	0/1:124:60,64:60:2151:64:2279:-168.044,0,-156.529	0/0:119:119,0:119:4226:0:0:0,-35.8226,-380.522	0/1:210:110,100:110:3911:100:3562:-257.567,0,-288.969	0/1:99:43,56:43:1540:56:1986:-149.211,0,-109.069	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.156	0/0:187:187,0:187:6696:0:0:0,-56.2926,-602.63
chr08	22821449	.	A	G	6900.04	PASS	AB=0.421954;ABP=55.5477;AC=23;AF=0.12234;AN=188;AO=427;CIGAR=1X;DP=5206;DPB=5206;DPRA=0.918687;EPP=780.474;EPPR=9600.78;GTI=2;LEN=1;MEANALT=1;MQM=59.8876;MQMR=59.9663;NS=94;NUMALT=1;ODDS=5.08211;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15153;QR=171126;RO=4777;RPL=409;RPP=780.474;RPPR=9600.78;RPR=18;RUN=1;SAF=0;SAP=930.229;SAR=427;SRF=0;SRP=10376.1;SRR=4777;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:131:131,0:131:4671:0:0:0,-39.4349,-420.553	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.802	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.445	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:25:24,0:24:860:0:0:0,-7.22472,-77.3621	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.818	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:32:22,10:22:783:10:356:-22.7483,0,-61.1137	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:99:64,35:64:2292:35:1244:-82.4627,0,-176.739	0/0:152:152,0:152:5424:0:0:0,-45.7566,-488.281	0/1:31:20,11:20:716:11:388:-25.9254,0,-55.4358	0/0:199:198,0:198:7116:0:0:0,-59.6039,-640.284	0/0:65:64,1:64:2300:1:36:0,-15.9687,-203.662	0/1:89:64,25:64:2292:25:896:-54.1687,0,-179.75	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:16:12,4:12:432:4:140:-8.09805,0,-34.4047	0/0:156:156,0:156:5562:0:0:0,-46.9607,-500.705	0/0:99:99,0:99:3535:0:0:0,-29.802,-318.359	0/0:41:41,0:41:1458:0:0:0,-12.3422,-131.515	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:50:32,18:32:1140:18:648:-43.5988,0,-87.8577	0/1:31:15,16:15:532:16:568:-42.1199,0,-38.8812	0/0:102:102,0:102:3629:0:0:0,-30.7051,-326.797	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.92	0/0:78:78,0:78:2782:0:0:0,-23.4803,-250.602	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:84:50,34:50:1792:34:1195:-82.5676,0,-136.276	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.953	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.482	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:84:45,39:45:1620:39:1386:-99.7225,0,-120.803	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:67:41,26:41:1472:26:924:-63.3071,0,-112.607	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.484	0/0:114:113,1:113:4033:1:36:0,-30.7191,-359.559	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/0:91:91,0:91:3267:0:0:0,-27.3937,-294.249	0/0:71:69,2:69:2465:2:63:0,-15.39,-215.099	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.899	0/1:81:44,37:44:1580:37:1310:-93.8167,0,-118.108	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.809	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8987	0/0:76:76,0:76:2715:0:0:0,-22.8783,-244.593	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:62:35,27:35:1256:27:960:-68.0524,0,-94.6814	0/0:131:131,0:131:4703:0:0:0,-39.4349,-423.428	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:49:27,22:27:968:22:788:-56.4943,0,-72.6869	0/1:43:27,16:27:959:16:559:-37.6933,0,-73.6811	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:62:28,34:28:1008:34:1207:-90.2714,0,-72.3618	0/1:55:19,36:19:680:36:1269:-97.9482,0,-44.9725	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.145	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613
chr08	23326102	.	A	G	14873.1	PASS	AB=0.502205;ABP=3.08691;AC=22;AF=0.117021;AN=188;AO=926;CIGAR=1X;DP=8121;DPB=8121;DPRA=1.21948;EPP=2013.79;EPPR=15607.2;GTI=0;LEN=1;MEANALT=1.06061;MQM=59.9816;MQMR=59.9797;NS=94;NUMALT=1;ODDS=4.79265;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32664;QR=254652;RO=7190;RPL=0;RPP=2013.79;RPPR=15607.2;RPR=926;RUN=1;SAF=0;SAP=2013.79;SAR=926;SRF=0;SRP=15615.9;SRR=7190;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.693	0/0:94:94,0:94:3345:0:0:0,-28.2968,-301.267	0/0:113:112,1:112:3990:1:36:0,-30.4181,-355.683	0/0:172:172,0:172:6063:0:0:0,-51.7772,-545.779	0/0:84:84,0:84:2973:0:0:0,-25.2865,-267.803	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:96:96,0:96:3379:0:0:0,-28.8989,-304.327	0/0:140:140,0:140:4953:0:0:0,-42.1442,-445.922	0/0:100:100,0:100:3541:0:0:0,-30.103,-318.9	0/0:109:109,0:109:3865:0:0:0,-32.8123,-348.047	0/0:88:88,0:88:3117:0:0:0,-26.4906,-280.757	0/0:70:70,0:70:2490:0:0:0,-21.0721,-224.352	0/0:73:73,0:73:2589:0:0:0,-21.9752,-233.258	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:56:56,0:56:1973:0:0:0,-16.8577,-177.843	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/0:74:73,1:73:2588:1:36:0,-18.6779,-229.569	0/0:56:56,0:56:1968:0:0:0,-16.8577,-177.393	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:67:67,0:67:2353:0:0:0,-20.169,-212.029	0/0:208:208,0:208:7377:0:0:0,-62.6142,-663.926	0/0:86:86,0:86:3058:0:0:0,-25.8886,-275.449	0/0:77:77,0:77:2733:0:0:0,-23.1793,-246.212	0/1:108:48,60:48:1699:60:2131:-159.502,0,-120.684	0/0:54:54,0:54:1917:0:0:0,-16.2556,-172.805	0/1:253:123,130:123:4358:130:4569:-335.215,0,-316.235	0/0:183:183,0:183:6466:0:0:0,-55.0885,-581.986	0/1:36:19,16:19:676:16:576:-41.2791,0,-50.2723	0/0:146:145,1:145:5133:1:36:0,-40.3521,-458.516	0/0:78:74,4:74:2600:4:144:0,-10.1667,-220.935	0/1:93:36,57:36:1276:57:2006:-152.814,0,-87.1473	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:237:236,0:236:8332:0:0:0,-71.0431,-749.536	0/0:234:234,0:234:8297:0:0:0,-70.441,-746.746	0/0:78:77,1:77:2716:1:36:0,-19.8821,-241.085	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/1:161:77,84:77:2726:84:2935:-215.92,0,-197.118	0/1:39:14,25:14:496:25:874:-67.235,0,-33.2341	0/0:174:174,0:174:6194:0:0:0,-52.3792,-557.561	0/0:82:82,0:82:2875:0:0:0,-24.6845,-258.985	0/0:68:68,0:68:2409:0:0:0,-20.47,-217.063	0/0:86:86,0:86:3050:0:0:0,-25.8886,-274.728	0/0:80:80,0:80:2824:0:0:0,-24.0824,-254.399	0/1:153:81,72:81:2837:72:2536:-182.433,0,-209.51	0/0:81:81,0:81:2864:0:0:0,-24.3834,-257.997	0/0:93:93,0:93:3324:0:0:0,-27.9958,-299.378	0/0:138:138,0:138:4882:0:0:0,-41.5421,-439.535	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:113:54,59:54:1910:59:2077:-153.18,0,-138.16	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/1:83:57,26:57:2024:26:915:-57.6801,0,-157.447	0/0:19:19,0:19:656:0:0:0,-5.71957,-59.3594	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/0:79:79,0:79:2789:0:0:0,-23.7814,-251.251	0/0:118:118,0:118:4144:0:0:0,-35.5215,-373.144	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:190:189,1:189:6681:1:36:0,-53.5974,-597.755	0/0:187:185,2:185:6573:2:72:0,-49.4559,-584.819	0/1:102:65,37:65:2299:37:1297:-86.3245,0,-176.466	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:128:126,1:126:4475:1:36:0,-34.9174,-399.314	0/0:75:75,0:75:2667:0:0:0,-22.5772,-240.276	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3372	0/0:84:83,0:83:2955:0:0:0,-24.9855,-265.963	0/0:84:83,0:83:2935:0:0:0,-24.9855,-264.142	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:89:89,0:89:3156:0:0:0,-26.7917,-284.264	0/1:75:35,40:35:1248:40:1428:-106.24,0,-90.0476	0/0:112:112,0:112:3985:0:0:0,-33.7154,-358.841	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/1:93:59,34:59:2082:34:1207:-80.9395,0,-159.651	0/0:114:113,1:113:3987:1:36:0,-30.7191,-355.424	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:160:159,1:159:5648:1:36:0,-44.5665,-504.845	0/1:78:40,38:40:1428:38:1364:-99.5804,0,-105.337	0/0:146:145,1:145:5106:1:36:0,-40.3521,-456.088	0/0:111:111,0:111:3928:0:0:0,-33.4143,-353.712	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/0:100:100,0:100:3523:0:0:0,-30.103,-317.281	0/0:159:159,0:159:5662:0:0:0,-47.8638,-509.665	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.921	0/1:98:47,51:47:1663:51:1780:-130.976,0,-120.456	0/1:73:38,35:38:1315:35:1247:-90.558,0,-96.6706	0/0:57:57,0:57:2030:0:0:0,-17.1587,-182.971	0/1:128:57,71:57:2010:71:2502:-186.899,0,-142.64	0/1:66:18,48:18:639:48:1680:-131.616,0,-37.9703	0/0:24:24,0:24:841:0:0:0,-7.22472,-76.0064	0/0:102:102,0:102:3592:0:0:0,-30.7051,-323.487
chr08	23441904	.	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chr08	23441920	.	T	C	249585	PASS	AB=0.555722;ABP=75.1253;AC=163;AF=0.876344;AN=186;AO=11186;CIGAR=1X;DP=12420;DPB=12420;DPRA=134.989;EPP=24267;EPPR=2678.26;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.9727;MQMR=59.9594;NS=93;NUMALT=1;ODDS=0.229628;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=399685;QR=44157;RO=1232;RPL=4;RPP=24258.4;RPPR=2678.26;RPR=11182;RUN=1;SAF=1;SAP=24284.4;SAR=11185;SRF=0;SRP=2678.26;SRR=1232;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:198:0,198:0:0:198:7080:-637.255,-59.6039,0	1/1:103:0,103:0:0:103:3704:-333.56,-31.0061,0	1/1:326:0,326:0:0:326:11630:-1046.57,-98.1358,0	1/1:139:0,139:0:0:139:5000:-450.145,-41.8432,0	1/1:177:0,177:0:0:177:6343:-570.959,-53.2823,0	1/1:187:0,187:0:0:187:6701:-603.163,-56.2926,0	1/1:203:0,203:0:0:203:7244:-652.013,-61.1091,0	1/1:128:0,127:0:0:127:4543:-408.67,-38.2308,0	1/1:161:0,161:0:0:161:5776:-519.952,-48.4658,0	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:99:0,99:0:0:99:3512:-316.29,-29.802,0	1/1:90:0,90:0:0:90:3197:-287.953,-27.0927,0	1/1:72:1,71:1:36:71:2539:-225.162,-18.0759,0	1/1:90:1,89:1:36:89:3183:-283.093,-23.4944,0	1/1:57:2,55:2:72:55:1959:-169.747,-10.322,0	1/1:76:0,76:0:0:76:2712:-244.324,-22.8783,0	1/1:114:1,113:1:36:113:4020:-358.39,-30.7191,0	1/1:42:0,42:0:0:42:1502:-135.475,-12.6433,0	1/1:321:0,321:0:0:321:11505:-1035.32,-96.6306,0	1/1:283:0,283:0:0:283:10115:-910.269,-85.1915,0	1/1:127:1,126:1:36:126:4491:-400.755,-34.6325,0	1/1:99:0,99:0:0:99:3529:-317.819,-29.802,0	0/1:170:47,123:47:1684:123:4413:-346.164,0,-100.672	1/1:78:0,78:0:0:78:2770:-249.53,-23.4803,0	0/1:558:278,280:278:9975:280:9998:-731.775,0,-729.707	1/1:243:0,243:0:0:243:8701:-783.08,-73.1503,0	0/1:58:25,33:25:884:33:1188:-89.7127,0,-62.414	1/1:270:0,270:0:0:270:9669:-870.158,-81.2781,0	1/1:180:7,173:7:252:173:6186:-533.807,-31.1564,0	0/1:297:129,168:129:4636:168:6021:-452.582,0,-327.995	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:315:0,315:0:0:315:11259:-1013.19,-94.8245,0	1/1:224:2,222:2:72:222:7918:-705.811,-60.594,0	1/1:59:0,59:0:0:59:2112:-190.331,-17.7608,0	.:.:.:.:.:.:.:.	0/1:209:102,107:102:3656:107:3824:-281.44,0,-266.284	0/1:26:15,11:15:536:11:387:-27.3392,0,-40.748	1/1:172:0,171:0:0:171:6127:-551.158,-51.4761,0	1/1:126:2,124:2:72:124:4427:-391.765,-31.0931,0	1/1:105:1,104:1:36:104:3727:-332.032,-28.0099,0	1/1:95:0,95:0:0:95:3395:-305.765,-28.5979,0	1/1:177:0,177:0:0:177:6348:-571.409,-53.2823,0	0/1:205:84,121:84:2986:121:4314:-326.726,0,-207.259	1/1:175:0,175:0:0:175:6243:-561.967,-52.6803,0	1/1:228:0,228:0:0:228:8159:-734.319,-68.6348,0	1/1:216:0,216:0:0:216:7772:-699.505,-65.0225,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:136:74,62:74:2656:62:2232:-160.19,0,-198.346	1/1:82:0,82:0:0:82:2935:-264.384,-24.6845,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:178:87,91:87:3120:91:3264:-240.397,0,-227.432	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:109:0,109:0:0:109:3901:-351.277,-32.8123,0	1/1:132:4,128:4:140:128:4545:-396.271,-26.7914,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:368:1,367:1:36:367:13060:-1171.61,-107.181,0	1/1:296:0,296:0:0:296:10574:-951.573,-89.1049,0	0/1:108:48,60:48:1713:60:2143:-160.625,0,-121.942	1/1:131:0,131:0:0:131:4682:-421.537,-39.4349,0	1/1:220:1,219:1:36:219:7815:-699.779,-62.6283,0	1/1:109:0,109:0:0:109:3873:-348.754,-32.8123,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:68:0,68:0:0:68:2436:-219.494,-20.47,0	1/1:137:10,127:10:356:127:4543:-376.627,-8.85986,0	0/1:35:13,22:13:464:22:788:-60.7087,0,-31.5615	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:89:44,45:44:1580:45:1586:-116.236,0,-115.7	1/1:231:1,230:1:36:230:8188:-733.337,-65.9397,0	1/1:222:0,222:0:0:222:7908:-711.747,-66.8287,0	0/1:149:23,126:23:828:126:4474:-357.976,0,-29.9906	1/1:169:0,169:0:0:169:6041:-543.793,-50.8741,0	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:149:0,149:0:0:149:5329:-479.733,-44.8535,0	0/1:87:37,50:37:1328:50:1796:-135.733,0,-93.6326	1/1:293:0,293:0:0:293:10484:-943.475,-88.2018,0	1/1:144:3,141:3:108:141:5027:-442.499,-33.2732,0	1/1:73:0,73:0:0:73:2599:-234.159,-21.9752,0	1/1:115:1,114:1:36:114:4051:-361.176,-31.0202,0	1/1:225:0,225:0:0:225:8018:-721.642,-67.7318,0	1/1:57:3,54:3:108:54:1918:-162.821,-7.08354,0	0/1:107:47,60:47:1692:60:2136:-160.296,0,-120.355	0/1:74:33,41:33:1184:41:1472:-110.472,0,-84.5921	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:71:32,39:32:1139:39:1385:-103.574,0,-81.4346	0/1:102:64,38:64:2304:38:1353:-91.3633,0,-176.915	1/1:207:0,207:0:0:207:7405:-666.492,-62.3132,0	1/1:126:1,125:1:36:125:4451:-397.163,-34.3315,0
chr08	23718059	.	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chr08	23765683	.	A	G	115018	PASS	AB=0.471768;ABP=12.3286;AC=168;AF=0.893617;AN=188;AO=5167;CIGAR=1X;DP=5898;DPB=5898;DPRA=0;EPP=11223;EPPR=1579.5;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.9383;MQMR=59.989;NS=94;NUMALT=1;ODDS=0.0798946;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184744;QR=26015;RO=726;RPL=0;RPP=11223;RPPR=1579.5;RPR=5167;RUN=1;SAF=5167;SAP=11223;SAR=0;SRF=726;SRP=1579.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1413:-127.465,-12.0412,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:92:0,92:0:0:92:3307:-297.839,-27.6948,0	1/1:118:0,118:0:0:118:4217:-379.705,-35.5215,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:26:1,25:1:36:25:900:-77.7194,-4.22851,0	1/1:55:0,55:0:0:55:1969:-177.485,-16.5567,0	1/1:85:0,85:0:0:85:3029:-272.841,-25.5876,0	1/1:85:0,85:0:0:85:3048:-274.546,-25.5876,0	1/1:73:0,73:0:0:73:2620:-235.96,-21.9752,0	1/1:73:0,73:0:0:73:2607:-234.878,-21.9752,0	1/1:103:0,103:0:0:103:3683:-331.645,-31.0061,0	1/1:79:0,79:0:0:79:2827:-254.668,-23.7814,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:63:0,63:0:0:63:2247:-202.493,-18.9649,0	1/1:59:0,58:0:0:58:2058:-185.118,-17.4597,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:24:0,23:0:0:23:813:-73.1257,-6.92369,0	1/1:24:0,24:0:0:24:858:-77.5416,-7.22472,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:73:0,73:0:0:73:2614:-235.377,-21.9752,0	1/1:52:0,52:0:0:52:1844:-166.24,-15.6536,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	0/1:52:23,29:23:813:29:1044:-78.6212,0,-57.8355	1/1:63:0,63:0:0:63:2260:-203.658,-18.9649,0	0/1:207:107,100:107:3848:100:3553:-257.666,0,-284.201	1/1:119:0,119:0:0:119:4260:-383.579,-35.8226,0	0/1:22:12,10:12:428:10:360:-26.1216,0,-32.2361	1/1:156:0,156:0:0:156:5592:-503.402,-46.9607,0	1/1:97:5,92:5:165:92:3283:-280.516,-14.0263,0	0/1:104:57,47:57:2033:47:1684:-120.54,0,-151.933	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:201:0,201:0:0:201:7170:-645.358,-60.507,0	1/1:72:0,72:0:0:72:2563:-230.861,-21.6742,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:75:40,35:40:1436:35:1252:-90.4078,0,-106.96	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:51:0,51:0:0:51:1818:-163.844,-15.3525,0	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	0/1:107:63,44:63:2264:44:1580:-110.281,0,-171.812	1/1:42:0,42:0:0:42:1494:-134.753,-12.6433,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:99:0,98:0:0:98:3487:-313.671,-29.5009,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:74:46,28:46:1648:28:1008:-68.7601,0,-126.332	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:80:38,42:38:1368:42:1492:-110.492,0,-99.3384	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:82:0,82:0:0:82:2932:-264.115,-24.6845,0	1/1:105:2,103:2:72:103:3700:-326.364,-24.7714,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:89:0,89:0:0:89:3192:-287.479,-26.7917,0	1/1:110:4,106:4:144:106:3796:-328.367,-19.7997,0	0/1:48:23,25:23:828:25:892:-66.1502,0,-60.3947	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:72:0,72:0:0:72:2572:-231.729,-21.6742,0	1/1:101:0,101:0:0:101:3628:-326.234,-30.404,0	1/1:55:0,55:0:0:55:1967:-177.3,-16.5567,0	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:84:0,84:0:0:84:2996:-269.873,-25.2865,0	0/1:77:39,38:39:1396:38:1353:-98.8891,0,-102.76	1/1:117:1,116:1:36:116:4123:-367.549,-31.6222,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:52:27,25:27:968:25:892:-64.9461,0,-71.7756	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:40:2,38:2:72:38:1364:-116.224,-5.20448,0	0/1:50:21,29:21:752:29:1036:-78.5024,0,-52.9548	1/1:131:0,131:0:0:131:4686:-421.9,-39.4349,0	1/1:69:0,68:0:0:68:2408:-216.612,-20.47,0	1/1:69:0,68:0:0:68:2440:-219.495,-20.47,0	1/1:39:0,39:0:0:39:1379:-124.408,-11.7402,0	1/1:129:0,129:0:0:129:4623:-416.232,-38.8329,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:64:29,35:29:1040:35:1252:-93.7192,0,-74.6484	0/1:63:37,26:37:1328:26:919:-64.0613,0,-100.857	1/1:68:0,68:0:0:68:2431:-219.045,-20.47,0	0/1:153:75,78:75:2684:78:2790:-205.282,0,-195.747	0/1:72:52,20:52:1864:20:711:-42.6415,0,-146.365	1/1:63:0,63:0:0:63:2232:-201.142,-18.9649,0	1/1:78:0,78:0:0:78:2796:-251.878,-23.4803,0
chr08	23926787	.	C	T	7688.28	PASS	AB=0.501092;ABP=3.01978;AC=24;AF=0.129032;AN=186;AO=468;CIGAR=1X;DP=4229;DPB=4229;DPRA=0.948727;EPP=1019.26;EPPR=8169.92;GTI=3;LEN=1;MEANALT=1;MQM=59.9252;MQMR=59.9968;NS=93;NUMALT=1;ODDS=0.359301;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=16719;QR=134082;RO=3761;RPL=0;RPP=1019.26;RPPR=8169.92;RPR=468;RUN=1;SAF=0;SAP=1019.26;SAR=468;SRF=0;SRP=8169.92;SRR=3761;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1086:0:0:0,-9.33193,-98.0476	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:114:114,0:114:4092:0:0:0,-34.3174,-368.465	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:93:93,0:93:3276:0:0:0,-27.9958,-295.059	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8364	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:25:25,0:25:882:0:0:0,-7.52575,-79.6965	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/0:65:65,0:65:2262:0:0:0,-19.5669,-203.838	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:65:42,23:42:1474:23:809:-53.5614,0,-113.384	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/1:173:78,95:78:2788:95:3395:-253.686,0,-199.083	0/0:81:80,1:80:2860:1:36:0,-20.7852,-254.04	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.809	0/0:55:55,0:55:1954:0:0:0,-16.5566,-176.134	0/1:60:32,28:32:1143:28:1008:-72.9746,0,-85.1169	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.889	0/0:77:77,0:77:2721:0:0:0,-23.1793,-245.134	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	.:.:.:.:.:.:.:.	0/1:80:42,38:42:1500:38:1355:-98.1658,0,-111.212	0/1:18:6,12:6:212:12:428:-33.4403,0,-14.0063	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.827	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.306	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:132:63,69:63:2239:69:2452:-181.154,0,-162.037	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:49:49,0:49:1729:0:0:0,-14.7505,-155.893	0/0:174:174,0:174:6194:0:0:0,-52.3792,-557.558	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:49:21,28:21:756:28:1000:-75.5649,0,-53.6168	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:39:17,22:17:603:22:784:-59.1437,0,-42.8593	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:78:78,0:78:2777:0:0:0,-23.4803,-250.17	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/0:73:73,0:73:2599:0:0:0,-21.9752,-234.159	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:56:56,0:56:1983:0:0:0,-16.8577,-178.744	0/1:6:5,1:5:171:1:32:-1.39313,0,-13.9193	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/1:30:20,10:20:708:10:360:-23.7134,0,-55.0147	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.142	0/1:33:16,17:16:576:17:612:-45.4794,0,-42.241	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:44:26,18:26:932:18:640:-44.684,0,-70.9535	0/0:89:89,0:89:3182:0:0:0,-26.7917,-286.603	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:76:76,0:76:2711:0:0:0,-22.8783,-244.234	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:47:25,22:25:888:22:784:-56.7355,0,-66.0906	0/1:34:10,24:10:356:24:864:-67.8475,0,-22.1462	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:28:17,11:17:612:11:396:-27.5087,0,-46.9846	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558
chr08	24038406	.	CCTC	GCTT,GCTC	160577	PASS	AB=0.549508,0.447869;ABP=35.477,39.0083;AC=167,21;AF=0.888298,0.111702;AN=188;AO=6635,689;CIGAR=1X2M1X,1X3M;DP=7344;DPB=7344.25;DPRA=0,1.04143;EPP=14402,1499.15;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.43617,2.14815;MQM=57.7967,44.2293;MQMR=0;NS=94;NUMALT=2;ODDS=9.8133;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=233565,24570;QR=0;RO=0;RPL=6635,689;RPP=14410.7,1499.15;RPPR=0;RPR=0,0;RUN=1,1;SAF=1,0;SAP=14402,1499.15;SAR=6634,689;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:71:0,71,0:0:0:71,0:2493,0:-223.628,-21.3731,0,-223.628,-21.3731,-223.628	1/1:49:0,48,0:0:0:48,0:1683,0:-151.199,-14.4494,0,-151.199,-14.4494,-151.199	1/1:122:0,122,0:0:0:122,0:4283,0:-384.613,-36.7257,0,-384.613,-36.7257,-384.613	1/1:82:0,82,0:0:0:82,0:2866,0:-257.978,-24.6845,0,-257.978,-24.6845,-257.978	1/1:18:0,18,0:0:0:18,0:639,0:-57.809,-5.41854,0,-57.809,-5.41854,-57.809	1/1:11:0,11,0:0:0:11,0:388,0:-35.2468,-3.31133,0,-35.2468,-3.31133,-35.2468	1/1:36:0,36,0:0:0:36,0:1245,0:-112.182,-10.8371,0,-112.182,-10.8371,-112.182	1/1:113:0,113,0:0:0:113,0:3981,0:-358.266,-34.0164,0,-358.266,-34.0164,-358.266	1/1:56:0,56,0:0:0:56,0:1957,0:-175.808,-16.8577,0,-175.808,-16.8577,-175.808	1/1:37:0,37,0:0:0:37,0:1309,0:-116.904,-11.1381,0,-116.904,-11.1381,-116.904	1/1:100:0,99,0:0:0:99,0:3482,0:-312.115,-29.802,0,-312.115,-29.802,-312.115	1/1:93:0,92,1:0:0:92,1:3268,36:-293.872,-27.6948,0,-290.979,-24.4473,-290.678	1/1:89:0,89,0:0:0:89,0:3117,0:-280.256,-26.7917,0,-280.256,-26.7917,-280.256	1/1:100:0,100,0:0:0:100,0:3537,0:-318.255,-30.103,0,-318.255,-30.103,-318.255	1/1:77:0,76,0:0:0:76,0:2686,0:-241.039,-22.8783,0,-241.039,-22.8783,-241.039	1/1:83:0,83,0:0:0:83,0:2906,0:-261.573,-24.9855,0,-261.573,-24.9855,-261.573	1/1:46:0,46,0:0:0:46,0:1617,0:-145.802,-13.8474,0,-145.802,-13.8474,-145.802	1/1:35:0,34,0:0:0:34,0:1199,0:-107.914,-10.235,0,-107.914,-10.235,-107.914	1/1:41:0,41,0:0:0:41,0:1427,0:-128.573,-12.3422,0,-128.573,-12.3422,-128.573	1/1:117:0,114,0:0:0:114,0:4012,0:-359.995,-34.3174,0,-359.995,-34.3174,-359.995	1/1:161:0,161,0:0:0:161,0:5657,0:-508.748,-48.4658,0,-508.748,-48.4658,-508.748	1/1:76:0,75,0:0:0:75,0:2642,0:-236.804,-22.5773,0,-236.804,-22.5773,-236.804	1/1:204:0,203,0:0:0:203,0:7065,0:-634.707,-61.1091,0,-634.707,-61.1091,-634.707	1/2:45:0,32,13:0:0:32,13:1139,466:-130.583,-37.7504,-28.1175,-93.1861,0,-89.2727	1/1:56:0,56,0:0:0:56,0:1974,0:-177.797,-16.8577,0,-177.797,-16.8577,-177.797	1/2:142:0,88,54:0:0:88,54:3110,1929:-406.455,-153.464,-126.973,-253.342,0,-237.086	1/1:299:0,299,0:0:0:299,0:10512,0:-945.61,-90.008,0,-945.61,-90.008,-945.61	1/2:40:0,21,19:0:0:21,19:744,680:-115.439,-54.8311,-48.5095,-60.9612,0,-55.2417	1/1:149:0,149,0:0:0:149,0:5259,0:-472.352,-44.8535,0,-472.352,-44.8535,-472.352	1/1:65:0,64,1:0:0:64,1:2252,36:-202.234,-19.2659,0,-199.325,-16.0001,-199.024	1/2:180:0,87,93:0:0:87,93:3044,3316:-510.78,-263.584,-237.394,-247.545,0,-219.549	1/2:15:0,10,5:0:0:10,5:333,180:-41.7827,-14.8854,-11.8751,-27.2457,0,-25.7406	1/1:13:0,13,0:0:0:13,0:467,0:-42.3692,-3.91339,0,-42.3692,-3.91339,-42.3692	1/2:16:0,7,9:0:0:7,9:251,316:-45.6402,-25.2052,-23.098,-20.7852,0,-18.0759	1/1:26:0,26,0:0:0:26,0:919,0:-83.0266,-7.82678,0,-83.0266,-7.82678,-83.0266	1/2:19:0,17,2:0:0:17,2:582,72:-53.2638,-6.14012,-1.02261,-47.4771,0,-46.8751	1/1:233:0,233,0:0:0:233,0:8201,0:-737.492,-70.14,0,-737.492,-70.14,-737.492	1/1:142:0,142,0:0:0:142,0:5023,0:-451.283,-42.7463,0,-451.283,-42.7463,-451.283	1/1:99:0,99,0:0:0:99,0:3511,0:-316.096,-29.802,0,-316.096,-29.802,-316.096	1/1:6:0,6,0:0:0:6,0:210,0:-19.2419,-1.80618,0,-19.2419,-1.80618,-19.2419	1/2:39:0,26,13:0:0:26,13:913,453:-110.531,-36.2554,-28.4286,-74.5655,0,-70.6521	1/2:43:0,20,23:0:0:20,23:710,828:-125.116,-67.266,-61.2454,-58.2056,0,-51.2819	1/1:107:0,106,0:0:0:106,0:3727,0:-335.111,-31.9092,0,-335.111,-31.9092,-335.111	1/1:71:0,70,0:0:0:70,0:2444,0:-219.792,-21.0721,0,-219.792,-21.0721,-219.792	1/1:77:0,77,0:0:0:77,0:2704,0:-243.415,-23.1793,0,-243.415,-23.1793,-243.415	1/1:95:0,95,0:0:0:95,0:3365,0:-302.546,-28.5979,0,-302.546,-28.5979,-302.546	1/1:80:0,80,0:0:0:80,0:2827,0:-254.57,-24.0824,0,-254.57,-24.0824,-254.57	1/2:97:0,59,36:0:0:59,36:2057,1280:-268.372,-101.51,-83.7492,-166.915,0,-156.078	1/1:55:0,55,0:0:0:55,0:1927,0:-173.374,-16.5567,0,-173.374,-16.5567,-173.374	1/1:109:0,109,0:0:0:109,0:3840,0:-344.44,-32.8123,0,-344.44,-32.8123,-344.44	1/1:98:0,98,0:0:0:98,0:3445,0:-309.761,-29.5009,0,-309.761,-29.5009,-309.761	1/1:19:0,19,0:0:0:19,0:667,0:-60.2677,-5.71957,0,-60.2677,-5.71957,-60.2677	1/2:47:0,23,24:0:0:23,24:823,860:-136.407,-69.3824,-62.4587,-67.3801,0,-60.1553	1/1:32:0,32,0:0:0:32,0:1138,0:-102.691,-9.63296,0,-102.691,-9.63296,-102.691	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/2:93:0,54,39:0:0:54,39:1902,1386:-266.246,-111.802,-95.5462,-154.795,0,-143.055	1/1:55:0,55,0:0:0:55,0:1940,0:-174.757,-16.5567,0,-174.757,-16.5567,-174.757	1/1:20:0,20,0:0:0:20,0:714,0:-64.4296,-6.0206,0,-64.42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chr08	24124021	.	G	A	2645.95	PASS	AB=0.520446;ABP=6.91734;AC=23;AF=0.12234;AN=188;AO=565;CIGAR=1X;DP=5604;DPB=5604;DPRA=0.830468;EPP=1229.89;EPPR=10929.9;GTI=3;LEN=1;MEANALT=1;MQM=23.5681;MQMR=33.7973;NS=94;NUMALT=1;ODDS=0.810843;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20213;QR=179970;RO=5036;RPL=565;RPP=1229.89;RPPR=10938.5;RPR=0;RUN=1;SAF=0;SAP=1229.89;SAR=565;SRF=1;SRP=10929.9;SRR=5035;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:923:0:0:0,-7.82678,-73.0629	0/0:45:45,0:45:1608:0:0:0,-13.5463,-126.722	0/0:97:97,0:97:3462:0:0:0,-29.1999,-277.042	0/0:121:121,0:121:4340:0:0:0,-36.4246,-338.948	0/0:23:23,0:23:820:0:0:0,-6.92369,-65.1379	0/0:35:35,0:35:1248:0:0:0,-10.536,-100.022	0/0:67:67,0:67:2400:0:0:0,-20.169,-189.899	0/0:71:71,0:71:2532:0:0:0,-21.3731,-199.956	0/0:84:84,0:84:3004:0:0:0,-25.2865,-240.492	0/0:71:71,0:71:2535:0:0:0,-21.3731,-200.147	0/0:48:48,0:48:1707:0:0:0,-14.4494,-134.939	0/0:98:98,0:98:3496:0:0:0,-29.5009,-277.427	0/0:83:83,0:83:2962:0:0:0,-24.9855,-234.419	0/0:30:30,0:30:1076:0:0:0,-9.0309,-83.2199	0/0:68:68,0:68:2440:0:0:0,-20.47,-190.311	0/0:47:47,0:47:1675:0:0:0,-14.1484,-131.025	0/0:28:28,0:28:995:0:0:0,-8.42884,-79.9544	0/0:24:24,0:24:864:0:0:0,-7.22472,-69.5427	0/0:25:25,0:25:887:0:0:0,-7.52575,-71.0161	0/0:77:75,0:75:2688:0:0:0,-22.5772,-210.475	0/0:125:125,0:125:4467:0:0:0,-37.6287,-349.776	0/0:38:38,0:38:1348:0:0:0,-11.4391,-106	0/0:101:101,0:101:3608:0:0:0,-30.404,-285.797	0/1:22:15,7:15:540:7:252:-7.3495,0,-36.2892	0/0:64:64,0:64:2292:0:0:0,-19.2659,-178.571	0/1:144:85,59:85:3044:59:2124:-72.7953,0,-194.881	0/0:236:236,0:236:8439:0:0:0,-71.0431,-651.901	0/1:28:16,12:16:572:12:432:-16.6525,0,-37.5634	0/0:132:132,0:132:4698:0:0:0,-39.736,-368.918	0/0:43:42,1:42:1504:1:36:0,-9.34646,-111.357	0/1:88:37,51:37:1319:51:1828:-75.1664,0,-75.3463	0/1:4:1,3:1:36:3:108:-4.9087,0,-1.91952	0/0:9:8,0:8:288:0:0:0,-2.40824,-22.6036	1/1:1:0,1:0:0:1:36:-2.18315,-0.30103,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-17.5319	0/1:13:4,9:4:144:9:324:-15.2774,0,-7.88082	0/0:140:140,0:140:4975:0:0:0,-42.1442,-388.675	0/0:41:41,0:41:1468:0:0:0,-12.3422,-114.552	0/0:34:34,0:34:1207:0:0:0,-10.235,-94.086	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.12364	0/1:93:49,44:49:1756:44:1580:-59.592,0,-109.761	0/1:22:11,11:11:396:11:396:-15.0326,0,-24.0749	0/0:67:67,0:67:2400:0:0:0,-20.169,-187.038	0/0:70:70,0:70:2494:0:0:0,-21.0721,-194.847	0/0:51:51,0:51:1828:0:0:0,-15.3525,-142.373	0/0:76:76,0:76:2724:0:0:0,-22.8783,-213.001	0/0:97:97,0:97:3484:0:0:0,-29.1999,-277.908	0/1:85:47,38:47:1688:38:1356:-51.7784,0,-105.096	0/0:46:46,0:46:1648:0:0:0,-13.8474,-129.376	0/0:43:43,0:43:1535:0:0:0,-12.9443,-121.611	0/0:42:42,0:42:1496:0:0:0,-12.6433,-117.609	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.7418	0/1:46:13,33:13:468:33:1176:-50.9746,0,-23.7666	0/0:29:29,0:29:1044:0:0:0,-8.72987,-79.219	0/1:9:5,4:5:176:4:144:-5.36839,0,-11.8421	0/1:83:34,49:34:1198:49:1751:-76.5004,0,-70.307	0/0:41:41,0:41:1468:0:0:0,-12.3422,-115.483	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.3687	0/0:8:8,0:8:288:0:0:0,-2.40824,-21.9444	0/0:62:62,0:62:2219:0:0:0,-18.6639,-174.112	0/0:68:68,0:68:2431:0:0:0,-20.47,-191.545	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.93491	0/0:99:99,0:99:3532:0:0:0,-29.802,-273.847	0/0:70:70,0:70:2508:0:0:0,-21.0721,-196.7	0/1:41:19,22:19:684:22:792:-32.3821,0,-42.2437	0/0:54:54,0:54:1925:0:0:0,-16.2556,-148.847	0/0:122:119,3:119:4260:3:108:0,-30.6128,-328.404	0/0:76:76,0:76:2695:0:0:0,-22.8783,-210.151	0/0:41:41,0:41:1468:0:0:0,-12.3422,-114.689	0/0:24:24,0:24:864:0:0:0,-7.22472,-69.914	0/0:42:42,0:42:1496:0:0:0,-12.6433,-117.418	0/1:10:7,3:7:252:3:108:-3.10252,0,-16.989	0/0:75:75,0:75:2653:0:0:0,-22.5772,-211.735	0/1:47:23,24:23:820:24:834:-33.0774,0,-51.0047	0/0:151:151,0:151:5383:0:0:0,-45.4555,-418.769	0/0:88:88,0:88:3152:0:0:0,-26.4906,-245.991	0/1:56:28,28:28:1008:28:1004:-41.9359,0,-64.04	0/0:80:80,0:80:2856:0:0:0,-24.0824,-228.022	0/0:7:7,0:7:252:0:0:0,-2.10721,-20.4008	0/0:72:72,0:72:2572:0:0:0,-21.6742,-200.211	0/1:43:21,22:21:752:22:788:-32.6991,0,-45.622	0/0:156:156,0:156:5588:0:0:0,-46.9607,-434.268	0/0:57:57,0:57:2039:0:0:0,-17.1587,-160.527	0/0:64:64,0:64:2296:0:0:0,-19.2659,-175.902	0/0:40:40,0:40:1427:0:0:0,-12.0412,-111.604	0/0:105:105,0:105:3742:0:0:0,-31.6081,-293.861	0/0:17:17,0:17:608:0:0:0,-5.11751,-48.4557	0/1:60:29,31:29:1036:31:1108:-45.6645,0,-63.1377	0/1:55:29,26:29:1036:26:936:-36.1126,0,-67.71	0/0:37:37,0:37:1332:0:0:0,-11.1381,-103.967	0/1:53:26,27:26:923:27:960:-41.0838,0,-57.1239	0/1:74:17,57:17:612:57:2032:-91.1039,0,-24.1131	0/0:86:86,0:86:3084:0:0:0,-25.8886,-242.181	0/0:114:114,0:114:4079:0:0:0,-34.3174,-318.736
chr08	24128475	.	T	C	18589.5	PASS	AB=0.479726;ABP=9.26181;AC=22;AF=0.117021;AN=188;AO=856;CIGAR=1X;DP=9154;DPB=9154;DPRA=0.773668;EPP=1861.79;EPPR=17993.7;GTI=1;LEN=1;MEANALT=1;MQM=59.9556;MQMR=59.9958;NS=94;NUMALT=1;ODDS=0.599453;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30491;QR=296020;RO=8297;RPL=470;RPP=20.9097;RPPR=3019.58;RPR=386;RUN=1;SAF=470;SAP=20.9097;SAR=386;SRF=5849;SRP=3030.25;SRR=2448;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:24:23,1:23:824:1:36:0,-3.62644,-70.885	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:165:165,0:165:5900:0:0:0,-49.6699,-531.111	0/0:103:103,0:103:3685:0:0:0,-31.0061,-331.851	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.797	0/0:70:70,0:70:2505:0:0:0,-21.0721,-225.701	0/0:186:185,0:185:6551:0:0:0,-55.6905,-589.465	0/0:158:158,0:158:5593:0:0:0,-47.5627,-503.496	0/0:185:185,0:185:6566:0:0:0,-55.6905,-591.023	0/0:187:187,0:187:6704:0:0:0,-56.2926,-603.435	0/0:194:194,0:194:6914:0:0:0,-58.3998,-622.327	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.882	0/0:204:204,0:204:7184:0:0:0,-61.4101,-646.619	0/0:152:152,0:152:5407:0:0:0,-45.7566,-486.761	0/0:113:113,0:113:4045:0:0:0,-34.0164,-364.236	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.454	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.9615	0/1:61:45,16:45:1612:16:568:-33.089,0,-127.007	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:116:67,49:67:2381:49:1760:-123.764,0,-179.627	0/0:86:86,0:86:3057:0:0:0,-25.8886,-275.357	0/1:91:59,32:59:2116:32:1135:-75.0652,0,-163.315	0/0:213:213,0:213:7634:0:0:0,-64.1194,-687.094	0/0:61:57,4:57:2021:4:144:0,-5.04921,-168.848	0/1:87:42,45:42:1497:45:1616:-119.54,0,-108.833	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:478:478,0:478:17033:0:0:0,-143.892,-1532.62	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:164:164,0:164:5845:0:0:0,-49.3689,-526.149	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:105:63,42:63:2256:42:1476:-101.524,0,-171.695	0/1:100:53,47:53:1900:47:1684:-121.744,0,-141.175	0/0:51:51,0:51:1812:0:0:0,-15.3525,-163.274	0/0:115:115,0:115:4120:0:0:0,-34.6184,-370.984	0/0:169:169,0:169:6001:0:0:0,-50.8741,-540.197	0/0:74:73,1:73:2575:1:36:0,-18.6779,-228.397	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:86:34,52:34:1224:52:1856:-141.324,0,-84.5785	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.638	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.145	0/0:142:141,1:141:4973:1:36:0,-39.148,-444.119	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:53:24,29:24:864:29:1035:-77.5085,0,-62.128	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:66:46,20:46:1652:20:712:-44.5387,0,-129.1	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:215:215,0:215:7644:0:0:0,-64.7214,-687.996	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:80:79,1:79:2828:1:36:0,-20.4841,-251.161	0/0:80:80,0:80:2867:0:0:0,-24.0824,-258.266	0/1:81:45,36:45:1616:36:1283:-91.383,0,-121.347	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:55:52,3:52:1864:3:108:0,-6.48148,-157.964	0/0:40:37,3:37:1328:3:108:0,-1.96603,-109.747	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/0:200:200,0:200:7126:0:0:0,-60.206,-641.399	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:57:57,0:57:2037:0:0:0,-17.1587,-183.6	0/1:64:34,30:34:1212:30:1080:-78.2473,0,-90.1204	0/0:199:199,0:199:7095:0:0:0,-59.905,-638.608	0/0:133:133,0:133:4764:0:0:0,-40.037,-428.917	0/1:53:18,35:18:648:35:1232:-95.2272,0,-42.6973	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:92:37,55:37:1317:55:1944:-147.539,0,-91.1351	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084	0/0:193:193,0:193:6904:0:0:0,-58.0988,-621.428	0/0:201:201,0:201:7165:0:0:0,-60.507,-644.906	0/0:184:184,0:184:6588:0:0:0,-55.3895,-593.001	0/0:242:241,1:241:8576:1:36:0,-69.251,-768.241	0/0:55:54,1:54:1913:1:36:0,-12.9584,-168.847	0/1:184:96,88:96:3409:88:3109:-224.649,0,-251.635	0/1:169:81,88:81:2860:88:3128:-230.871,0,-206.763	0/0:172:172,0:172:6139:0:0:0,-51.7772,-552.606	0/1:192:102,90:102:3649:90:3223:-232.49,0,-270.815	0/1:116:46,70:46:1629:70:2498:-190.153,0,-111.977	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:313:313,0:313:11167:0:0:0,-94.2224,-1004.92
chr08	24128482	.	T	A	17881	PASS	AB=0.483718;ABP=6.89941;AC=22;AF=0.117021;AN=188;AO=831;CIGAR=1X;DP=8902;DPB=8902;DPRA=0.73906;EPP=1798.83;EPPR=17518.1;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9543;MQMR=59.995;NS=94;NUMALT=1;ODDS=0.765655;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29299;QR=286507;RO=8066;RPL=448;RPP=14.0506;RPPR=3503.65;RPR=383;RUN=1;SAF=449;SAP=14.7404;SAR=382;SRF=5836;SRP=3503.65;SRR=2230;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.534	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/0:118:118,0:118:4199:0:0:0,-35.5215,-378.093	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/0:163:163,0:163:5840:0:0:0,-49.0679,-525.712	0/0:104:104,0:104:3708:0:0:0,-31.3071,-333.921	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.622	0/0:70:70,0:70:2483:0:0:0,-21.0721,-223.724	0/0:175:175,0:175:6181:0:0:0,-52.6802,-556.397	0/0:148:147,1:147:5197:1:36:0,-40.9542,-464.277	0/0:178:177,0:177:6299:0:0:0,-53.2823,-566.647	0/0:186:186,0:186:6571:0:0:0,-55.9916,-591.477	0/0:193:193,0:193:6822:0:0:0,-58.0988,-614.059	0/0:154:154,0:154:5460:0:0:0,-46.3586,-491.532	0/0:200:200,0:200:7059:0:0:0,-60.206,-635.382	0/0:147:147,0:147:5215:0:0:0,-44.2514,-469.494	0/0:110:110,0:110:3885:0:0:0,-33.1133,-349.845	0/0:112:112,0:112:3987:0:0:0,-33.7154,-359.022	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.643	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/1:59:45,14:45:1616:14:491:-26.7603,0,-127.969	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/1:113:62,51:62:2220:51:1805:-128.713,0,-166.048	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.89	0/1:88:58,30:58:2053:30:1059:-69.1306,0,-158.549	0/0:218:217,0:217:7754:0:0:0,-65.3235,-697.532	0/0:59:56,3:56:1974:3:89:0,-9.4564,-169.627	0/1:85:40,45:40:1428:45:1596:-118.343,0,-103.23	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:475:475,0:475:16813:0:0:0,-142.989,-1512.85	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:154:154,0:154:5446:0:0:0,-46.3586,-490.259	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:105:62,43:62:2220:43:1525:-105.933,0,-168.456	0/1:94:51,42:51:1795:42:1504:-107.299,0,-133.476	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.372	0/0:108:108,0:108:3802:0:0:0,-32.5112,-342.38	0/0:168:168,0:168:5912:0:0:0,-50.573,-532.197	0/0:71:70,1:70:2508:1:36:0,-17.7749,-222.374	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:80:31,49:31:1097:49:1727:-131.617,0,-74.9474	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:141:140,1:140:4985:1:36:0,-38.847,-445.201	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3584	0/1:49:22,27:22:773:27:956:-71.6053,0,-55.139	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:64:44,20:44:1554:20:695:-43.6049,0,-120.884	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:205:204,0:204:7238:0:0:0,-61.4101,-651.119	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:76:75,1:75:2680:1:36:0,-19.28,-237.847	0/0:80:79,1:79:2827:1:36:0,-20.4841,-251.07	0/1:79:45,34:45:1612:34:1208:-85.2386,0,-121.589	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:54:51,3:51:1780:3:104:0,-6.55281,-150.777	0/0:41:39,2:39:1362:2:72:0,-5.50551,-116.04	0/0:121:121,0:121:4263:0:0:0,-36.4246,-383.853	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:198:198,0:198:7057:0:0:0,-59.6039,-635.193	0/1:10:6,4:6:212:4:136:-9.56524,0,-16.4145	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:63:31,32:31:1108:32:1140:-83.9443,0,-81.0661	0/0:195:195,0:195:6988:0:0:0,-58.7008,-628.983	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.604	0/1:52:17,35:17:600:35:1239:-96.1601,0,-38.6756	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/0:87:87,0:87:3091:0:0:0,-26.1896,-278.419	0/1:90:35,55:35:1256:55:1921:-146.07,0,-86.2526	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/0:185:184,0:184:6533:0:0:0,-55.3895,-587.699	0/0:191:191,0:191:6780:0:0:0,-57.4967,-610.281	0/0:181:181,0:181:6448:0:0:0,-54.4864,-580.411	0/0:240:240,0:240:8496:0:0:0,-72.2472,-764.655	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.161	0/1:177:90,87:90:3161:87:3050:-221.448,0,-231.435	0/1:164:78,86:78:2758:86:3015:-222.208,0,-199.094	0/0:166:166,0:166:5894:0:0:0,-49.971,-530.575	0/1:182:99,83:99:3513:83:2920:-208.244,0,-261.593	0/1:114:46,68:46:1614:68:2399:-181.848,0,-111.228	0/0:15:14,1:14:477:1:36:0,-0.917175,-39.6549	0/0:304:304,0:304:10781:0:0:0,-91.5131,-970.206
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chr08	24344238	.	GCCG	GCCA	196345	PASS	AB=0.553953;ABP=50.3419;AC=166;AF=0.882979;AN=188;AO=8748;CIGAR=3M1X;DP=9664;DPB=9664.5;DPRA=0;EPP=18999.1;EPPR=1855.29;GTI=2;LEN=1;MEANALT=1.53191;MQM=59.9452;MQMR=59.9603;NS=94;NUMALT=1;ODDS=1.00092;PAIRED=0;PAIREDR=0;PAO=2;PQA=72;PQR=0;PRO=0;QA=313618;QR=30230;RO=857;RPL=0;RPP=18999.1;RPPR=1863.96;RPR=8748;RUN=1;SAF=8748;SAP=18999.1;SAR=0;SRF=856;SRP=1855.29;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:1,59:1:36:59:2090:-184.749,-14.8234,0	1/1:132:0,132:0:0:132:4733:-426.11,-39.736,0	1/1:67:2,65:2:72:65:2332:-203.303,-13.3323,0	1/1:210:0,207:0:0:207:7424:-667.832,-62.3132,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:83:0,82:0:0:82:2939:-264.393,-24.6845,0	1/1:160:0,160:0:0:160:5744:-517.06,-48.1648,0	1/1:149:0,146:0:0:146:5228:-470.328,-43.9504,0	1/1:145:0,145:0:0:145:5180:-466.319,-43.6494,0	1/1:122:0,122:0:0:122:4362:-392.726,-36.7257,0	1/1:65:0,65:0:0:65:2331:-210.049,-19.567,0	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	1/1:92:1,90:1:36:90:3232:-287.503,-24.1553,0	1/1:95:1,93:1:32:93:3344:-297.956,-25.4374,0	1/1:85:0,83:0:0:83:2984:-268.471,-24.9855,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:93:0,93:0:0:93:3348:-301.535,-27.9958,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:215:0,215:0:0:215:7716:-694.471,-64.7215,0	1/1:173:0,171:0:0:171:6090:-547.87,-51.4761,0	1/1:164:0,164:0:0:164:5884:-529.669,-49.3689,0	1/1:154:0,153:0:0:153:5482:-493.236,-46.0576,0	0/1:146:27,119:27:946:119:4260:-339.628,0,-41.5034	1/1:103:0,103:0:0:103:3700:-333.201,-31.0061,0	0/1:380:194,184:194:6896:184:6604:-480.285,0,-506.562	1/1:167:0,167:0:0:167:5970:-537.386,-50.272,0	0/1:48:23,25:23:817:25:896:-66.4885,0,-59.4025	1/1:332:0,329:0:0:329:11804:-1061.91,-99.0389,0	1/1:178:13,162:13:460:162:5809:-481.105,-11.2687,0	0/1:103:47,54:47:1651:54:1917:-142.042,0,-118.111	0/1:11:6,5:6:213:5:180:-13.2407,0,-16.205	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:14:7,7:7:244:7:248:-18.4498,0,-18.0849	1/1:339:4,334:4:131:334:11984:-1066.26,-89.9888,0	1/1:103:0,103:0:0:103:3692:-332.422,-31.0061,0	1/1:69:1,67:1:36:67:2399:-212.568,-17.2316,0	1/1:4:0,4:0:0:4:144:-13.312,-1.20412,0	0/1:160:74,86:74:2618:86:3080:-229.263,0,-187.703	0/1:34:20,14:20:709:14:504:-35.4631,0,-53.901	1/1:174:0,174:0:0:174:6229:-560.677,-52.3792,0	1/1:138:0,138:0:0:138:4956:-446.128,-41.5421,0	1/1:96:0,96:0:0:96:3448:-310.532,-28.8989,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:98:0,98:0:0:98:3516:-316.632,-29.5009,0	0/1:149:54,95:54:1914:95:3416:-262.769,0,-127.553	1/1:128:0,127:0:0:127:4544:-408.777,-38.2308,0	1/1:66:0,66:0:0:66:2364:-213.017,-19.868,0	1/1:217:0,214:0:0:214:7661:-689.207,-64.4204,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:57:31,26:31:1089:26:936:-67.4008,0,-81.1589	1/1:84:0,83:0:0:83:2976:-267.713,-24.9855,0	0/1:31:18,13:18:643:13:468:-33.1277,0,-48.8686	0/1:64:18,46:18:643:46:1645:-129.072,0,-38.9344	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:62:1,61:1:36:61:2174:-192.315,-15.0656,0	1/1:143:1,140:1:32:140:5032:-449.798,-39.5791,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:192:0,191:0:0:191:6841:-615.333,-57.4967,0	1/1:92:1,91:1:36:91:3257:-289.722,-24.0965,0	0/1:62:36,26:36:1274:26:936:-65.8956,0,-96.2992	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:206:5,199:5:180:199:7113:-623.67,-45.2179,0	1/1:39:0,39:0:0:39:1400:-126.281,-11.7402,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:110:0,110:0:0:110:3960:-356.561,-33.1133,0	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	1/1:167:0,165:0:0:165:5932:-533.684,-49.67,0	0/1:69:39,27:39:1389:27:972:-67.6301,0,-105.144	1/1:148:0,146:0:0:146:5227:-470.193,-43.9504,0	1/1:122:0,122:0:0:122:4376:-394.005,-36.7257,0	0/1:108:37,69:37:1297:69:2476:-190.824,0,-84.7615	1/1:63:0,62:0:0:62:2228:-200.424,-18.6639,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:82:1,79:1:36:79:2828:-251.186,-20.8306,0	0/1:91:38,52:38:1347:52:1868:-140.947,0,-94.0767	1/1:187:0,185:0:0:185:6611:-594.711,-55.6906,0	1/1:146:0,146:0:0:146:5248:-472.454,-43.9504,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:124:0,124:0:0:124:4452:-400.821,-37.3277,0	1/1:231:0,230:0:0:230:8260:-742.889,-69.2369,0	1/1:66:0,63:0:0:63:2249:-202.367,-18.9649,0	0/1:84:33,51:33:1138:51:1824:-139.155,0,-77.4353	0/1:82:30,52:30:1058:52:1861:-142.591,0,-70.8452	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:77:38,39:38:1309:39:1400:-103.12,0,-94.9258	0/1:83:48,35:48:1660:35:1252:-87.9996,0,-124.699	1/1:114:0,114:0:0:114:4076:-366.998,-34.3174,0	1/1:145:0,145:0:0:145:5212:-469.188,-43.6494,0
chr08	24344256	.	A	G	12853.7	PASS	AB=0.441635;ABP=58.0143;AC=22;AF=0.117021;AN=188;AO=846;CIGAR=1X;DP=9624;DPB=9624;DPRA=1.06406;EPP=1822.75;EPPR=17664.2;GTI=2;LEN=1;MEANALT=1.0303;MQM=59.9267;MQMR=59.9376;NS=94;NUMALT=1;ODDS=1.31961;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30118;QR=314687;RO=8777;RPL=2;RPP=1822.75;RPPR=17722.7;RPR=844;RUN=1;SAF=846;SAP=1840.08;SAR=0;SRF=8768;SRP=18983.9;SRR=9;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:62,0:62:2200:0:0:0,-18.6639,-198.244	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.301	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:207:206,1:206:7381:1:36:0,-58.7149,-660.705	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:160:159,1:159:5708:1:36:0,-44.5665,-510.224	0/0:147:147,0:147:5260:0:0:0,-44.2514,-473.519	0/0:146:146,0:146:5244:0:0:0,-43.9504,-472.076	0/0:125:125,0:125:4496:0:0:0,-37.6287,-404.778	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:100:100,0:100:3600:0:0:0,-30.103,-324.205	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:95:95,0:95:3384:0:0:0,-28.5978,-304.774	0/0:85:85,0:85:3047:0:0:0,-25.5875,-274.459	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.577	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:215:215,0:215:7684:0:0:0,-64.7214,-691.594	0/0:168:168,0:168:6028:0:0:0,-50.573,-542.621	0/0:161:161,0:161:5780:0:0:0,-48.4658,-520.313	0/0:154:154,0:154:5528:0:0:0,-46.3586,-497.615	0/1:142:116,26:116:4156:26:927:-41.0011,0,-331.476	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/1:377:184,192:184:6616:192:6841:-502.213,0,-481.965	0/0:177:175,2:175:6264:2:72:0,-46.4456,-557.009	0/1:48:25,23:25:896:23:814:-59.1316,0,-66.4885	0/0:329:329,0:329:11773:0:0:0,-99.0389,-1059.41	0/0:176:163,13:163:5852:13:468:0,-10.5216,-484.33	0/1:104:55,49:55:1968:49:1743:-125.829,0,-146.088	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/0:335:335,0:335:12015:0:0:0,-100.845,-1081.17	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.312	0/1:159:85,74:85:3052:74:2639:-189.893,0,-227.045	0/1:34:14,20:14:504:20:720:-54.8938,0,-35.4631	0/0:171:171,0:171:6114:0:0:0,-51.4761,-550.336	0/0:139:139,0:139:4977:0:0:0,-41.8432,-448.076	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.484	0/0:75:74,1:74:2664:1:36:0,-18.979,-236.407	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.753	0/1:145:94,51:94:3376:51:1824:-120.474,0,-260.375	0/0:126:126,0:126:4501:0:0:0,-37.9298,-405.255	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.686	0/0:217:217,0:217:7776:0:0:0,-65.3235,-699.841	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:57:26,31:26:928:31:1104:-82.5119,0,-66.6795	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.843	0/1:31:13,18:13:468:18:636:-48.2361,0,-33.1277	0/1:66:48,18:48:1716:18:635:-37.609,0,-134.855	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.761	0/0:143:142,1:142:5104:1:36:0,-39.449,-455.9	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:191:191,0:191:6829:0:0:0,-57.4967,-614.62	0/0:91:90,1:90:3220:1:36:0,-23.7955,-286.413	0/1:58:25,33:25:896:33:1176:-88.688,0,-63.5006	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:205:203,2:203:7288:2:72:0,-54.8744,-649.125	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.963	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:110:109,1:109:3920:1:36:0,-29.515,-349.365	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:168:168,0:168:5997:0:0:0,-50.573,-539.836	0/1:69:28,41:28:1008:41:1472:-112.005,0,-70.2653	0/0:147:147,0:147:5248:0:0:0,-44.2514,-472.434	0/0:123:123,0:123:4420:0:0:0,-37.0267,-397.962	0/1:108:71,37:71:2536:37:1314:-86.049,0,-195.98	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:81:80,1:80:2860:1:36:0,-20.7852,-254.04	0/1:92:53,39:53:1899:39:1395:-98.1536,0,-143.491	0/0:186:186,0:186:6668:0:0:0,-55.9916,-600.166	0/0:146:146,0:146:5248:0:0:0,-43.9504,-472.454	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.821	0/0:232:231,1:231:8300:1:36:0,-66.2407,-742.087	0/0:65:65,0:65:2319:0:0:0,-19.5669,-208.97	0/1:87:52,35:52:1872:35:1237:-85.4375,0,-142.569	0/1:83:52,31:52:1872:31:1095:-73.8713,0,-143.266	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:74:38,36:38:1368:36:1254:-90.8838,0,-101.145	0/1:82:34,48:34:1220:48:1716:-130.041,0,-85.4223	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.598	0/0:144:144,0:144:5180:0:0:0,-43.3483,-466.309
chr08	24344286	.	AGAG	GGAA,AGAA	207166	PASS	AB=0.554413,0.444505;ABP=50.5088,52.4181;AC=166,22;AF=0.882979,0.117021;AN=188;AO=8679,846;CIGAR=1X2M1X,3M1X;DP=9550;DPB=9553;DPRA=0,0.928093;EPP=18779.8,1840.08;EPPR=5.18177;GTI=2;LEN=4,1;MEANALT=1.55319,2.16129;MQM=59.9408,59.8901;MQMR=60;NS=94;NUMALT=2;ODDS=1.57315;PAIRED=0,0;PAIREDR=0;PAO=12,0;PQA=376,0;PQR=0;PRO=0;QA=302276,30126;QR=36;RO=1;RPL=8678,845;RPP=18840.5,1831.4;RPPR=5.18177;RPR=1,1;RUN=1,1;SAF=8670,845;SAP=18771.1,1831.4;SAR=9,1;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:63:0,63,0:0:0:63,0:2137,0:-192.592,-18.9649,0,-192.592,-18.9649,-192.592	1/1:128:0,128,0:0:0:128,0:4474,0:-402.822,-38.5318,0,-402.822,-38.5318,-402.822	1/1:66:0,64,2:0:0:64,2:2234,68:-200.984,-19.2659,0,-195.469,-13.4103,-194.867	1/1:209:0,209,0:0:0:209,0:7232,0:-650.936,-62.9153,0,-650.936,-62.9153,-650.936	1/1:63:0,63,0:0:0:63,0:2203,0:-198.536,-18.9649,0,-198.536,-18.9649,-198.536	1/1:84:0,84,0:0:0:84,0:2942,0:-265.017,-25.2865,0,-265.017,-25.2865,-265.017	1/1:156:0,156,0:0:0:156,0:5444,0:-489.93,-46.9607,0,-489.93,-46.9607,-489.93	1/1:141:0,140,1:0:0:140,1:4897,36:-440.519,-42.1442,0,-437.582,-38.847,-437.281	1/1:142:0,139,0:0:0:139,0:4795,0:-431.358,-41.8432,0,-431.358,-41.8432,-431.358	1/1:125:0,124,0:0:0:124,0:4322,0:-388.796,-37.3277,0,-388.796,-37.3277,-388.796	1/1:64:0,64,0:0:0:64,0:2243,0:-202.136,-19.2659,0,-202.136,-19.2659,-202.136	1/1:98:0,98,0:0:0:98,0:3402,0:-306.4,-29.5009,0,-306.4,-29.5009,-306.4	1/1:93:0,93,0:0:0:93,0:3224,0:-290.387,-27.9958,0,-290.387,-27.9958,-290.387	1/1:92:0,90,0:0:0:90,0:3112,0:-279.953,-27.0927,0,-279.953,-27.0927,-279.953	1/1:85:0,85,0:0:0:85,0:2952,0:-265.919,-25.5876,0,-265.919,-25.5876,-265.919	1/1:65:0,65,0:0:0:65,0:2250,0:-202.763,-19.567,0,-202.763,-19.567,-202.763	1/1:89:0,89,0:0:0:89,0:3147,0:-283.458,-26.7917,0,-283.458,-26.7917,-283.458	1/1:59:1,58,0:1:36:58,0:2016,0:-178.114,-14.1625,0,-178.415,-17.4597,-181.353	1/1:42:0,42,0:0:0:42,0:1477,0:-133.224,-12.6433,0,-133.224,-12.6433,-133.224	1/1:216:0,215,0:0:0:215,0:7504,0:-675.151,-64.7215,0,-675.151,-64.7215,-675.151	1/1:169:0,169,0:0:0:169,0:5857,0:-527.257,-50.8741,0,-527.257,-50.8741,-527.257	1/1:160:0,160,0:0:0:160,0:5524,0:-497.304,-48.1648,0,-497.304,-48.1648,-497.304	1/1:150:0,149,0:0:0:149,0:5178,0:-465.81,-44.8535,0,-465.81,-44.8535,-465.81	1/2:145:0,118,27:0:0:118,27:4094,960:-411.37,-78.5885,-43.0669,-333.136,0,-325.008	1/1:104:0,104,0:0:0:104,0:3610,0:-325.116,-31.3071,0,-325.116,-31.3071,-325.116	1/2:374:0,184,190:0:0:184,190:6460,6786:-1079.37,-553.613,-498.224,-526.109,0,-468.913	1/1:173:0,171,2:0:0:171,2:5939,72:-534.253,-51.4761,0,-528.378,-45.6013,-527.776	1/2:46:0,23,23:0:0:23,23:795,807:-130.278,-65.7043,-58.7806,-64.6003,0,-57.6766	1/1:323:0,323,0:0:0:323,0:11270,0:-1013.86,-97.2327,0,-1013.86,-97.2327,-1013.86	1/1:175:0,161,13:0:0:161,13:5592,440:-503.074,-48.4658,0,-467.405,-12.8156,-463.492	1/2:101:0,52,49:0:0:52,49:1824,1752:-291.627,-143.194,-127.54,-148.787,0,-134.037	1/2:11:0,5,6:0:0:5,6:171,212:-31.4922,-17.6186,-16.1135,-14.2206,0,-12.4144	1/1:13:0,13,0:0:0:13,0:436,0:-39.5609,-3.91339,0,-39.5609,-3.91339,-39.5609	1/2:6:0,3,3:0:0:3,3:102,108:-17.4359,-9.17208,-8.26899,-8.61368,0,-7.71059	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:14:0,7,7:0:0:7,7:238,248:-39.8542,-20.557,-18.4498,-19.6443,0,-17.537	1/1:337:0,337,0:0:0:337,0:11772,0:-1059.37,-101.447,0,-1059.37,-101.447,-1059.37	1/1:102:0,102,0:0:0:102,0:3497,0:-314.949,-30.7051,0,-314.949,-30.7051,-314.949	1/1:69:0,69,0:0:0:69,0:2411,0:-217.247,-20.7711,0,-217.247,-20.7711,-217.247	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:156:0,85,71:0:0:85,71:2991,2529:-449.609,-206.127,-180.54,-243.476,0,-222.103	1/2:34:0,14,20:0:0:14,20:489,712:-98.1607,-58.3861,-54.1716,-40.1265,0,-34.1059	1/1:174:0,174,0:0:0:174,0:6006,0:-540.654,-52.3792,0,-540.654,-52.3792,-540.654	1/1:141:0,141,0:0:0:141,0:4940,0:-444.763,-42.4452,0,-444.763,-42.4452,-444.763	1/1:94:0,93,0:0:0:93,0:3255,0:-292.816,-27.9958,0,-292.816,-27.9958,-292.816	1/1:75:0,74,1:0:0:74,1:2594,36:-233.351,-22.2762,0,-230.414,-18.979,-230.113	1/1:92:0,92,0:0:0:92,0:3215,0:-289.576,-27.6948,0,-289.576,-27.6948,-289.576	1/2:146:0,93,52:0:0:93,52:3235,1848:-413.321,-150.318,-122.322,-263.044,0,-247.39	1/1:127:0,127,0:0:0:127,0:4429,0:-398.793,-38.2308,0,-398.793,-38.2308,-398.793	1/1:66:0,65,0:0:0:65,0:2272,0:-204.439,-19.567,0,-204.439,-19.567,-204.439	1/1:219:0,219,0:0:0:219,0:7700,0:-693.039,-65.9256,0,-693.039,-65.9256,-693.039	1/1:6:0,6,0:0:0:6,0:209,0:-19.1504,-1.80618,0,-19.1504,-1.80618,-19.1504	1/2:58:0,26,32:0:0:26,32:893,1117:-163.283,-90.7738,-82.947,-72.8545,0,-63.2215	1/1:82:0,82,0:0:0:82,0:2882,0:-259.619,-24.6845,0,-259.619,-24.6845,-259.619	1/2:31:0,13,18:0:0:13,18:457,648:-90.429,-53.2333,-49.32,-37.5506,0,-32.132	1/2:65:0,46,19:0:0:46,19:1597,684:-185.979,-56.1708,-42.3234,-130.165,0,-124.445	1/1:76:0,76,0:0:0:76,0:2633,0:-237.22,-22.8783,0,-237.22,-22.8783,-237.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chr08	24344301	.	C	T	243992	PASS	AB=0.582218;ABP=139.054;AC=167;AF=0.888298;AN=188;AO=10946;CIGAR=1X;DP=11943;DPB=11943;DPRA=0;EPP=23711.2;EPPR=2163.63;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.4847;MQMR=59.9729;NS=94;NUMALT=1;ODDS=1.09197;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=389403;QR=35037;RO=995;RPL=10;RPP=23685.2;RPPR=2163.63;RPR=10936;RUN=1;SAF=3;SAP=23745.9;SAR=10943;SRF=0;SRP=2163.63;SRR=995;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:79:0,79:0:0:79:2800:-252.232,-23.7814,0	1/1:92:0,92:0:0:92:3288:-296.132,-27.6948,0	1/1:294:0,294:0:0:294:10444:-939.496,-88.5028,0	1/1:124:0,124:0:0:124:4402:-396.326,-37.3277,0	1/1:70:0,70:0:0:70:2500:-225.24,-21.0721,0	1/1:57:0,57:0:0:57:2040:-183.856,-17.1587,0	1/1:105:1,104:1:36:104:3700:-329.573,-28.0099,0	1/1:158:0,158:0:0:158:5575:-501.462,-47.5627,0	1/1:131:0,131:0:0:131:4661:-419.588,-39.4349,0	1/1:95:1,94:1:36:94:3338:-296.715,-24.9996,0	1/1:122:0,122:0:0:122:4340:-390.717,-36.7257,0	1/1:135:0,135:0:0:135:4819:-433.621,-40.6391,0	1/1:87:0,87:0:0:87:3096:-278.839,-26.1896,0	1/1:95:0,95:0:0:95:3354:-301.906,-28.5979,0	1/1:67:0,67:0:0:67:2382:-214.619,-20.169,0	1/1:105:0,105:0:0:105:3746:-337.271,-31.6082,0	1/1:73:0,73:0:0:73:2612:-235.122,-21.9752,0	1/1:37:0,37:0:0:37:1316:-118.722,-11.1381,0	1/1:74:0,74:0:0:74:2655:-238.232,-22.2762,0	1/1:156:2,154:2:72:154:5462:-484.731,-40.124,0	1/1:178:0,178:0:0:178:6331:-569.717,-53.5833,0	1/1:138:0,138:0:0:138:4909:-441.924,-41.5421,0	1/1:142:0,142:0:0:142:5021:-451.411,-42.7463,0	0/1:55:25,30:25:860:30:1067:-79.5355,0,-61.155	1/1:175:0,175:0:0:175:6216:-559.288,-52.6803,0	0/1:259:88,171:88:3113:171:6086:-469.842,0,-202.431	1/1:417:1,416:1:36:416:14817:-1329.18,-121.931,0	0/1:41:21,20:21:744:20:703:-51.247,0,-54.9421	1/1:315:0,314:0:0:314:11189:-1005.83,-94.5234,0	1/1:155:1,154:1:36:154:5454:-487.15,-43.0614,0	0/1:139:67,72:67:2375:72:2572:-189.832,0,-172.165	0/1:26:17,9:17:585:9:324:-21.6683,0,-45.1451	1/1:167:3,164:3:104:164:5851:-516.918,-40.5692,0	1/1:154:7,147:7:243:147:5232:-448.778,-24.1511,0	1/1:14:0,14:0:0:14:486:-44.0518,-4.21442,0	0/1:51:10,41:10:352:41:1445:-114.981,0,-16.6657	1/1:256:1,255:1:36:255:9068:-812.359,-73.4654,0	1/1:168:0,168:0:0:168:6020:-540.579,-50.573,0	1/1:107:0,107:0:0:107:3831:-344.772,-32.2102,0	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	0/1:145:56,89:56:2003:89:3165:-240.972,0,-136.894	0/1:49:22,27:22:767:27:972:-73.0368,0,-54.599	1/1:259:0,259:0:0:259:9216:-829.296,-77.9668,0	1/1:88:0,88:0:0:88:3156:-284.236,-26.4906,0	1/1:80:0,80:0:0:80:2850:-256.71,-24.0824,0	1/1:158:0,158:0:0:158:5611:-504.906,-47.5627,0	1/1:113:0,113:0:0:113:4034:-363.222,-34.0164,0	0/1:190:77,113:77:2683:113:4022:-304.843,0,-184.518	1/1:48:0,48:0:0:48:1715:-154.304,-14.4494,0	1/1:154:1,153:1:36:153:5452:-487.116,-42.7603,0	1/1:203:0,203:0:0:203:7242:-651.429,-61.1091,0	1/1:20:0,20:0:0:20:712:-64.3929,-6.0206,0	0/1:193:92,101:92:3270:101:3586:-264.822,0,-236.194	1/1:100:0,100:0:0:100:3570:-320.678,-30.103,0	0/1:25:6,19:6:216:19:676:-53.6341,0,-12.2648	0/1:163:72,91:72:2528:91:3222:-241.115,0,-178.703	1/1:85:0,85:0:0:85:3035:-272.021,-25.5876,0	1/1:256:0,256:0:0:256:9096:-818.211,-77.0637,0	1/1:24:0,24:0:0:24:856:-77.341,-7.22472,0	1/1:152:0,152:0:0:152:5423:-487.906,-45.7566,0	1/1:130:0,130:0:0:130:4651:-418.67,-39.1339,0	1/1:211:1,210:1:32:210:7483:-669.914,-60.318,0	1/1:265:0,265:0:0:265:9446:-849.966,-79.773,0	1/1:168:3,165:3:108:165:5883:-519.098,-40.4979,0	0/1:105:29,76:29:1013:76:2715:-212.491,0,-59.8712	1/1:97:0,97:0:0:97:3448:-310.51,-29.1999,0	1/1:194:3,191:3:104:191:6805:-602.564,-48.697,0	1/1:210:1,209:1:36:209:7428:-664.507,-59.618,0	1/1:120:0,120:0:0:120:4280:-385.287,-36.1236,0	1/1:43:0,43:0:0:43:1531:-138.082,-12.9443,0	1/1:53:0,53:0:0:53:1887:-169.79,-15.9546,0	0/1:44:15,29:15:531:29:1024:-79.2273,0,-34.8766	1/1:211:0,211:0:0:211:7457:-670.785,-63.5173,0	0/1:94:38,55:38:1356:55:1964:-148.641,0,-94.0238	1/1:193:1,192:1:32:192:6806:-609.146,-54.8995,0	1/1:185:0,185:0:0:185:6610:-594.652,-55.6906,0	0/1:175:54,121:54:1896:121:4254:-330.335,0,-118.235	1/1:130:0,130:0:0:130:4576:-411.976,-39.1339,0	1/1:43:0,43:0:0:43:1527:-137.714,-12.9443,0	1/1:105:0,105:0:0:105:3747:-337.393,-31.6082,0	0/1:88:62,26:62:2189:26:936:-57.9028,0,-170.781	1/1:200:1,199:1:36:199:7058:-631.584,-56.6077,0	1/1:65:0,65:0:0:65:2312:-208.327,-19.567,0	1/1:92:0,92:0:0:92:3287:-295.75,-27.6948,0	1/1:48:0,48:0:0:48:1663:-149.947,-14.4494,0	1/1:133:0,133:0:0:133:4704:-423.182,-40.037,0	1/1:19:0,19:0:0:19:676:-61.1646,-5.71957,0	0/1:91:36,55:36:1264:55:1956:-148.913,0,-86.6661	0/1:90:40,50:40:1392:50:1766:-131.877,0,-98.4813	1/1:89:0,89:0:0:89:3141:-282.893,-26.7917,0	0/1:205:80,125:80:2808:125:4444:-338.351,0,-191.25	0/1:89:60,29:60:2109:29:1036:-66.7485,0,-163.286	1/1:220:0,220:0:0:220:7847:-706.219,-66.2266,0	1/1:98:0,98:0:0:98:3512:-316.18,-29.5009,0
chr08	24344316	.	G	A	245320	PASS	AB=0.585702;ABP=151.145;AC=167;AF=0.888298;AN=188;AO=10965;CIGAR=1X;DP=11958;DPB=11958;DPRA=0;EPP=23735.1;EPPR=2157.11;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.486;MQMR=60;NS=94;NUMALT=1;ODDS=1.06163;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=391212;QR=34786;RO=992;RPL=9;RPP=23735.1;RPPR=2157.11;RPR=10956;RUN=1;SAF=0;SAP=23813.2;SAR=10965;SRF=0;SRP=2157.11;SRR=992;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:82:0,82:0:0:82:2939:-264.732,-24.6845,0	1/1:91:0,91:0:0:91:3253:-292.981,-27.3937,0	1/1:294:1,293:1:36:293:10475:-938.592,-84.9045,0	1/1:130:0,130:0:0:130:4630:-416.797,-39.1339,0	1/1:71:0,71:0:0:71:2545:-229.294,-21.3731,0	1/1:58:0,58:0:0:58:2065:-186.105,-17.4597,0	1/1:103:1,102:1:36:102:3656:-325.604,-27.4078,0	1/1:157:0,157:0:0:157:5608:-504.553,-47.2617,0	1/1:131:0,131:0:0:131:4670:-420.398,-39.4349,0	1/1:94:0,94:0:0:94:3351:-301.741,-28.2968,0	1/1:119:0,119:0:0:119:4266:-384.059,-35.8226,0	1/1:132:0,132:0:0:132:4653:-418.874,-39.736,0	1/1:82:0,82:0:0:82:2940:-264.809,-24.6845,0	1/1:92:1,91:1:36:91:3187:-283.392,-24.0965,0	1/1:66:0,66:0:0:66:2368:-213.361,-19.868,0	1/1:105:0,105:0:0:105:3760:-338.516,-31.6082,0	1/1:74:0,74:0:0:74:2637:-237.182,-22.2762,0	1/1:36:0,36:0:0:36:1277:-115.219,-10.8371,0	1/1:73:0,73:0:0:73:2596:-233.861,-21.9752,0	1/1:162:2,160:2:72:160:5672:-503.482,-41.9301,0	1/1:179:0,179:0:0:179:6362:-572.509,-53.8844,0	1/1:139:0,139:0:0:139:4970:-447.395,-41.8432,0	1/1:140:1,139:1:36:139:4988:-445.124,-38.5459,0	0/1:57:25,32:25:832:32:1118:-83.7205,0,-58.023	1/1:172:0,172:0:0:172:6152:-553.634,-51.7772,0	0/1:255:84,171:84:2921:171:6102:-472.467,0,-186.361	1/1:425:2,423:2:68:423:15091:-1350.96,-121.48,0	0/1:41:21,20:21:743:20:720:-52.7759,0,-54.8511	1/1:312:0,312:0:0:312:11109:-999.108,-93.9214,0	1/1:154:1,153:1:36:153:5487:-490.103,-42.7603,0	0/1:139:66,73:66:2305:73:2620:-194.163,0,-165.865	0/1:28:17,11:17:604:11:396:-27.5432,0,-46.2618	1/1:167:3,164:3:108:164:5879:-519.067,-40.1968,0	1/1:148:7,141:7:248:141:5025:-429.7,-21.8882,0	1/1:14:0,14:0:0:14:491:-44.5139,-4.21442,0	0/1:52:10,42:10:356:42:1486:-118.357,0,-16.7277	1/1:254:0,254:0:0:254:9083:-817.311,-76.4616,0	1/1:174:0,174:0:0:174:6199:-557.544,-52.3792,0	1/1:109:0,109:0:0:109:3900:-350.977,-32.8123,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:147:57,90:57:2036:90:3208:-244.583,0,-139.261	0/1:48:21,27:21:728:27:959:-72.1653,0,-51.3883	1/1:261:0,260:0:0:260:9275:-834.162,-78.2678,0	1/1:92:0,92:0:0:92:3308:-297.909,-27.6948,0	1/1:85:0,85:0:0:85:3052:-274.881,-25.5876,0	1/1:155:0,155:0:0:155:5520:-496.791,-46.6597,0	1/1:111:0,111:0:0:111:3987:-358.998,-33.4143,0	0/1:195:81,114:81:2842:114:4070:-307.655,0,-197.317	1/1:50:0,50:0:0:50:1762:-158.687,-15.0515,0	1/1:155:1,154:1:36:154:5536:-494.664,-43.0614,0	1/1:204:0,204:0:0:204:7249:-652.202,-61.4101,0	1/1:20:0,20:0:0:20:714:-64.5834,-6.0206,0	0/1:191:91,100:91:3233:100:3592:-265.963,0,-233.695	1/1:103:0,103:0:0:103:3676:-329.936,-31.0061,0	0/1:25:7,18:7:248:18:633:-49.7611,0,-15.1384	0/1:161:71,90:71:2487:90:3223:-241.8,0,-175.614	1/1:83:0,83:0:0:83:2946:-265.319,-24.9855,0	1/1:257:0,257:0:0:257:9187:-826.369,-77.3647,0	1/1:23:0,23:0:0:23:828:-74.8203,-6.92369,0	1/1:151:0,151:0:0:151:5410:-486.905,-45.4555,0	1/1:130:0,130:0:0:130:4640:-417.682,-39.1339,0	1/1:215:1,214:1:36:214:7627:-682.453,-61.1232,0	1/1:271:0,271:0:0:271:9682:-871.151,-81.5791,0	1/1:171:3,168:3:108:168:5960:-526.024,-41.401,0	0/1:111:31,80:31:1048:80:2855:-223.475,0,-61.2033	1/1:98:0,98:0:0:98:3506:-315.727,-29.5009,0	1/1:189:2,187:2:72:187:6664:-592.874,-50.0579,0	1/1:206:1,205:1:36:205:7309:-654.18,-58.4139,0	1/1:119:0,119:0:0:119:4251:-382.691,-35.8226,0	1/1:43:0,43:0:0:43:1535:-138.442,-12.9443,0	1/1:55:0,55:0:0:55:1967:-176.978,-16.5567,0	0/1:44:15,29:15:519:29:1044:-81.0295,0,-33.7914	1/1:209:0,209:0:0:209:7469:-672.136,-62.9153,0	0/1:94:37,57:37:1324:57:2036:-155.136,0,-91.1653	1/1:192:2,190:2:72:190:6735:-599.106,-50.961,0	1/1:185:0,185:0:0:185:6598:-593.594,-55.6906,0	0/1:175:54,121:54:1904:121:4290:-333.57,0,-118.955	1/1:131:0,131:0:0:131:4688:-422.009,-39.4349,0	1/1:42:0,42:0:0:42:1499:-135.196,-12.6433,0	1/1:106:0,106:0:0:106:3792:-341.432,-31.9092,0	0/1:90:64,26:64:2232:26:928:-56.5795,0,-174.048	1/1:198:1,197:1:36:197:6997:-626.017,-56.0057,0	1/1:64:0,64:0:0:64:2300:-207.247,-19.2659,0	1/1:96:0,96:0:0:96:3423:-307.994,-28.8989,0	1/1:45:0,45:0:0:45:1596:-143.927,-13.5464,0	1/1:132:0,132:0:0:132:4687:-421.907,-39.736,0	1/1:17:0,17:0:0:17:608:-55.0507,-5.11751,0	0/1:91:36,55:36:1260:55:1968:-149.993,0,-86.3059	0/1:89:39,50:39:1349:50:1769:-132.619,0,-94.9141	1/1:91:0,91:0:0:91:3222:-290.174,-27.3937,0	0/1:203:78,125:78:2759:125:4435:-338.138,0,-187.444	0/1:86:57,29:57:1984:29:1044:-68.3725,0,-152.941	1/1:219:0,219:0:0:219:7828:-704.49,-65.9256,0	1/1:101:0,101:0:0:101:3615:-325.442,-30.404,0
chr08	24344358	.	G	C	246088	PASS	AB=0.576476;ABP=120.916;AC=167;AF=0.888298;AN=188;AO=10923;CIGAR=1X;DP=11933;DPB=11933;DPRA=0;EPP=23419;EPPR=2155.02;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.4901;MQMR=59.9472;NS=94;NUMALT=1;ODDS=1.71935;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=389923;QR=35885;RO=1003;RPL=10888;RPP=23419;RPPR=2163.66;RPR=35;RUN=1;SAF=0;SAP=23722;SAR=10923;SRF=1;SRP=2172.32;SRR=1002;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:82:0,82:0:0:82:2932:-264.103,-24.6845,0	1/1:91:0,91:0:0:91:3253:-292.981,-27.3937,0	1/1:288:0,288:0:0:288:10281:-924.849,-86.6966,0	1/1:129:1,128:1:36:128:4577:-408.185,-35.2346,0	1/1:72:0,72:0:0:72:2580:-232.434,-21.6742,0	1/1:56:0,56:0:0:56:2004:-180.613,-16.8577,0	1/1:107:0,107:0:0:107:3802:-342.31,-32.2102,0	1/1:156:0,156:0:0:156:5565:-500.738,-46.9607,0	1/1:130:0,129:0:0:129:4617:-415.407,-38.8329,0	1/1:94:0,94:0:0:94:3376:-303.73,-28.2968,0	1/1:120:0,120:0:0:120:4285:-385.758,-36.1236,0	1/1:129:0,129:0:0:129:4605:-414.381,-38.8329,0	1/1:84:0,84:0:0:84:3012:-271.278,-25.2865,0	1/1:94:0,93:0:0:93:3317:-298.463,-27.9958,0	1/1:66:0,66:0:0:66:2356:-212.282,-19.868,0	1/1:99:0,99:0:0:99:3556:-320.171,-29.802,0	1/1:72:0,72:0:0:72:2567:-231.074,-21.6742,0	1/1:36:0,36:0:0:36:1288:-116.204,-10.8371,0	1/1:71:0,71:0:0:71:2533:-228.194,-21.3731,0	1/1:156:2,154:2:72:154:5490:-486.883,-40.124,0	1/1:177:0,177:0:0:177:6303:-567.195,-53.2823,0	1/1:136:0,136:0:0:136:4873:-438.668,-40.9401,0	1/1:144:0,144:0:0:144:5132:-461.628,-43.3483,0	0/1:55:24,31:24:856:31:1070:-79.9186,0,-60.8045	1/1:174:0,174:0:0:174:6203:-558.112,-52.3792,0	0/1:259:88,170:88:3160:170:6063:-467.703,0,-206.599	1/1:415:0,415:0:0:415:14865:-1337.08,-124.927,0	0/1:39:19,20:19:676:20:716:-53.0169,0,-49.4278	1/1:311:0,310:0:0:310:11072:-995.317,-93.3193,0	1/1:160:0,160:0:0:160:5714:-514.112,-48.1648,0	0/1:132:69,63:69:2472:63:2264:-164.231,0,-182.998	0/1:28:16,12:16:576:12:428:-30.4193,0,-43.7461	1/1:166:3,163:3:108:163:5841:-515.642,-39.8958,0	1/1:150:7,143:7:252:143:5114:-437.332,-22.1255,0	1/1:14:0,14:0:0:14:500:-45.3184,-4.21442,0	0/1:46:10,36:10:360:36:1269:-100.652,0,-18.8969	1/1:251:0,251:0:0:251:8940:-803.751,-75.5585,0	1/1:172:0,172:0:0:172:6153:-553.73,-51.7772,0	1/1:109:0,109:0:0:109:3905:-351.413,-32.8123,0	1/1:22:0,22:0:0:22:788:-71.2223,-6.62266,0	0/1:147:59,88:59:2104:88:3164:-240.273,0,-145.378	0/1:48:22,26:22:784:26:932:-69.7388,0,-56.4345	1/1:261:0,261:0:0:261:9296:-836.43,-78.5688,0	1/1:91:0,91:0:0:91:3268:-294.312,-27.3937,0	1/1:82:0,82:0:0:82:2895:-260.755,-24.6845,0	1/1:155:0,155:0:0:155:5530:-497.246,-46.6597,0	1/1:112:0,112:0:0:112:3996:-359.799,-33.7154,0	0/1:198:83,115:83:2972:115:4113:-310.466,0,-208.109	1/1:50:0,50:0:0:50:1769:-159.16,-15.0515,0	1/1:157:0,157:0:0:157:5617:-505.564,-47.2617,0	1/1:205:0,205:0:0:205:7333:-659.611,-61.7112,0	1/1:20:0,20:0:0:20:712:-64.3929,-6.0206,0	0/1:195:94,101:94:3372:101:3624:-267.631,0,-244.567	1/1:103:0,103:0:0:103:3681:-330.626,-31.0061,0	0/1:25:7,18:7:248:18:633:-49.7611,0,-15.1384	0/1:169:74,95:74:2652:95:3412:-256.392,0,-188.052	1/1:81:0,81:0:0:81:2889:-260.217,-24.3834,0	1/1:255:0,255:0:0:255:9094:-817.837,-76.7627,0	1/1:23:0,23:0:0:23:824:-74.4657,-6.92369,0	1/1:149:0,149:0:0:149:5319:-478.516,-44.8535,0	1/1:130:0,130:0:0:130:4630:-416.78,-39.1339,0	1/1:216:0,216:0:0:216:7683:-691.119,-65.0225,0	1/1:265:0,265:0:0:265:9451:-850.415,-79.773,0	1/1:171:3,168:3:108:168:6012:-530.676,-41.401,0	0/1:111:31,80:31:1108:80:2849:-222.738,0,-66.6167	1/1:99:0,99:0:0:99:3541:-318.875,-29.802,0	1/1:185:3,182:3:93:182:6528:-578.873,-47.0334,0	1/1:208:1,207:1:36:207:7390:-660.447,-59.016,0	1/1:116:0,116:0:0:116:4138:-372.519,-34.9195,0	1/1:43:0,42:0:0:42:1500:-134.932,-12.6433,0	1/1:56:0,56:0:0:56:2012:-181.027,-16.8577,0	0/1:46:16,30:16:568:30:1049:-80.8708,0,-37.6045	1/1:209:0,208:0:0:208:7342:-660.271,-62.6142,0	0/1:94:38,56:38:1356:56:1993:-151.266,0,-94.0437	1/1:194:1,193:1:36:193:6856:-613.456,-54.8015,0	1/1:182:0,182:0:0:182:6515:-586.012,-54.7875,0	0/1:172:54,118:54:1936:118:4217:-327.891,0,-122.739	1/1:126:0,126:0:0:126:4471:-402.527,-37.9298,0	1/1:42:0,42:0:0:42:1508:-136.006,-12.6433,0	1/1:105:0,105:0:0:105:3737:-336.497,-31.6082,0	0/1:88:64,24:64:2292:24:852:-50.5016,0,-180.051	1/1:202:0,202:0:0:202:7225:-650.103,-60.8081,0	1/1:65:0,65:0:0:65:2320:-209.046,-19.567,0	1/1:92:0,92:0:0:92:3262:-293.51,-27.6948,0	1/1:46:0,46:0:0:46:1620:-146.086,-13.8474,0	1/1:130:1,129:1:36:129:4590:-409.349,-35.5356,0	1/1:19:0,19:0:0:19:684:-61.887,-5.71957,0	0/1:88:35,53:35:1244:53:1904:-145.139,0,-85.774	0/1:90:40,50:40:1423:50:1773:-132.462,0,-101.274	1/1:90:0,90:0:0:90:3224:-290.352,-27.0927,0	0/1:207:81,125:81:2897:125:4465:-339.552,0,-198.592	0/1:84:57,27:57:2052:27:968:-62.1371,0,-159.665	1/1:242:0,242:0:0:242:8669:-780.143,-72.8493,0	1/1:102:0,102:0:0:102:3635:-327.236,-30.7051,0
chr08	24347800	.	A	G	16404.2	PASS	AB=0.507572;ABP=3.96393;AC=23;AF=0.125;AN=184;AO=993;CIGAR=1X;DP=9494;DPB=9494;DPRA=0.927067;EPP=2150.61;EPPR=18304.5;GTI=2;LEN=1;MEANALT=1;MQM=59.9547;MQMR=59.9905;NS=92;NUMALT=1;ODDS=2.04282;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35451;QR=304257;RO=8500;RPL=1;RPP=2150.61;RPPR=18304.5;RPR=992;RUN=1;SAF=993;SAP=2159.28;SAR=0;SRF=8500;SRP=18460.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/0:211:211,0:211:7561:0:0:0,-63.5173,-680.527	0/0:205:205,0:205:7357:0:0:0,-61.7111,-662.173	0/0:68:67,1:67:2408:1:36:0,-16.8718,-213.378	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.047	0/0:116:116,0:116:4153:0:0:0,-34.9195,-373.951	0/0:125:125,0:125:4454:0:0:0,-37.6287,-401.01	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.27	0/0:138:138,0:138:4937:0:0:0,-41.5421,-444.479	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:130:130,0:130:4657:0:0:0,-39.1339,-419.29	0/0:67:66,1:66:2376:1:36:0,-16.5707,-210.499	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:156:156,0:156:5593:0:0:0,-46.9607,-503.49	0/0:182:182,0:182:6525:0:0:0,-54.7875,-587.33	0/0:147:146,1:146:5244:1:36:0,-40.6531,-468.497	0/0:152:152,0:152:5445:0:0:0,-45.7566,-490.176	0/1:51:24,27:24:860:27:949:-70.3702,0,-62.3693	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:217:103,114:103:3677:114:4072:-301.326,0,-265.809	0/0:297:297,0:297:10645:0:0:0,-89.4059,-957.956	0/1:45:19,26:19:684:26:918:-69.3895,0,-48.344	0/0:333:333,0:333:11855:0:0:0,-100.243,-1066.81	0/0:184:172,12:172:6131:12:428:0,-16.5307,-513.029	0/1:139:82,57:82:2936:57:2044:-142.389,0,-222.631	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:206:206,0:206:7408:0:0:0,-62.0122,-666.761	0/0:113:111,2:111:3984:2:68:0,-27.5587,-352.292	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	.:.:.:.:.:.:.:.	0/1:138:81,57:81:2884:57:2048:-143.049,0,-218.253	0/1:41:18,23:18:648:23:824:-62.1411,0,-46.3097	0/0:291:291,0:291:10345:0:0:0,-87.5997,-930.974	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:147:146,1:146:5206:1:36:0,-40.6531,-465.079	0/0:160:160,0:160:5717:0:0:0,-48.1648,-514.646	0/1:184:96,88:96:3448:88:3148:-228.156,0,-255.142	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.013	0/0:153:153,0:153:5485:0:0:0,-46.0576,-493.774	0/0:95:95,0:95:3367:0:0:0,-28.5978,-303.243	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:155:69,86:69:2476:86:3076:-230.364,0,-176.434	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:190:102,88:102:3664:88:3110:-222.93,0,-272.767	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:98:98,0:98:3501:0:0:0,-29.5009,-315.299	0/0:93:92,1:92:3300:1:36:0,-24.3975,-293.62	.:.:.:.:.:.:.:.	0/0:204:204,0:204:7264:0:0:0,-61.4101,-653.809	0/0:179:179,0:179:6383:0:0:0,-53.8844,-574.557	0/1:27:17,10:17:612:10:345:-23.253,0,-47.2856	0/0:99:99,0:99:3541:0:0:0,-29.802,-318.897	0/0:205:204,1:204:7290:1:36:0,-58.1129,-652.551	0/0:128:128,0:128:4581:0:0:0,-38.5318,-412.453	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:25:17,8:17:608:8:288:-18.7417,0,-47.5263	0/0:145:145,0:145:5200:0:0:0,-43.6493,-468.138	0/1:75:33,42:33:1188:42:1504:-113.077,0,-84.6513	0/0:194:194,0:194:6956:0:0:0,-58.3998,-626.104	0/0:130:130,0:130:4637:0:0:0,-39.1339,-417.493	0/1:181:81,100:81:2873:100:3579:-267.83,0,-204.131	0/0:148:148,0:148:5278:0:0:0,-44.5524,-475.154	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.633	0/1:115:44,71:44:1576:71:2528:-193.152,0,-107.513	0/0:192:192,0:192:6892:0:0:0,-57.7978,-620.345	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:148:148,0:148:5316:0:0:0,-44.5524,-478.567	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:68:34,34:34:1224:34:1216:-89.2765,0,-89.997	0/1:76:34,42:34:1220:42:1512:-113.496,0,-87.2285	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:91:52,39:52:1864:39:1394:-98.3651,0,-140.646	0/1:81:27,54:27:972:54:1932:-149.773,0,-63.4145	0/0:169:169,0:169:6061:0:0:0,-50.8741,-545.579	0/0:92:91,0:91:3268:0:0:0,-27.3937,-293.98
chr08	24556193	.	G	A	119494	PASS	AB=0.486683;ABP=4.91888;AC=162;AF=0.89011;AN=182;AO=5321;CIGAR=1X;DP=5969;DPB=5969;DPRA=0;EPP=11557.4;EPPR=1401.44;GTI=1;LEN=1;MEANALT=1.04396;MQM=59.6929;MQMR=59.9876;NS=91;NUMALT=1;ODDS=1.96413;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190770;QR=23034;RO=644;RPL=5321;RPP=11557.4;RPPR=1401.44;RPR=0;RUN=1;SAF=0;SAP=11557.4;SAR=5321;SRF=0;SRP=1401.44;SRR=644;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:396:-35.9508,-3.31133,0	1/1:43:0,43:0:0:43:1544:-139.229,-12.9443,0	1/1:82:0,82:0:0:82:2933:-263.962,-24.6845,0	1/1:163:0,163:0:0:163:5828:-524.52,-49.0679,0	1/1:12:0,12:0:0:12:428:-38.8302,-3.61236,0	1/1:15:0,15:0:0:15:540:-48.9356,-4.51545,0	1/1:71:0,71:0:0:71:2552:-229.928,-21.3731,0	1/1:80:0,80:0:0:80:2868:-258.074,-24.0824,0	1/1:54:0,54:0:0:54:1936:-174.508,-16.2556,0	1/1:52:0,52:0:0:52:1860:-167.674,-15.6536,0	1/1:35:0,35:0:0:35:1260:-113.618,-10.5361,0	1/1:63:0,63:0:0:63:2268:-204.358,-18.9649,0	1/1:62:0,62:0:0:62:2217:-199.59,-18.6639,0	1/1:60:0,59:0:0:59:2091:-188.083,-17.7608,0	1/1:55:0,55:0:0:55:1976:-178.108,-16.5567,0	1/1:51:0,51:0:0:51:1832:-165.156,-15.3525,0	1/1:33:0,33:0:0:33:1184:-106.86,-9.93399,0	1/1:34:0,34:0:0:34:1224:-110.431,-10.235,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:45:0,45:0:0:45:1620:-146.081,-13.5464,0	1/1:127:0,127:0:0:127:4550:-409.297,-38.2308,0	1/1:45:0,45:0:0:45:1601:-144.376,-13.5464,0	1/1:88:0,88:0:0:88:3143:-283.091,-26.4906,0	0/1:50:17,33:17:612:33:1188:-92.1633,0,-40.3619	1/1:27:0,27:0:0:27:972:-87.7721,-8.12781,0	0/1:198:103,95:103:3689:95:3402:-246.787,0,-272.607	1/1:155:0,155:0:0:155:5563:-500.531,-46.6597,0	0/1:15:8,7:8:288:7:248:-18.12,0,-21.752	1/1:209:0,209:0:0:209:7508:-675.255,-62.9153,0	1/1:102:4,98:4:140:98:3520:-304.047,-17.7605,0	0/1:94:51,43:51:1816:43:1540:-110.462,0,-135.425	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:1,3:1:27:3:108:-8.87105,0,-1.49566	1/1:141:0,141:0:0:141:5059:-455.445,-42.4452,0	1/1:63:0,63:0:0:63:2245:-202.307,-18.9649,0	1/1:25:0,25:0:0:25:892:-80.5801,-7.52575,0	.:.:.:.:.:.:.:.	0/1:90:49,41:49:1748:41:1472:-105.683,0,-130.507	0/1:22:12,10:12:432:10:360:-26.1134,0,-32.5985	1/1:64:0,64:0:0:64:2284:-205.804,-19.2659,0	1/1:38:0,38:0:0:38:1359:-122.579,-11.4391,0	1/1:40:0,40:0:0:40:1436:-129.532,-12.0412,0	1/1:56:0,56:0:0:56:2012:-181.313,-16.8577,0	1/1:29:0,29:0:0:29:1044:-94.2666,-8.72987,0	0/1:125:56,68:56:1992:68:2440:-182.16,0,-141.867	1/1:67:1,66:1:36:66:2367:-209.686,-16.5707,0	1/1:87:0,87:0:0:87:3120:-281.022,-26.1896,0	1/1:98:0,98:0:0:98:3528:-317.638,-29.5009,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:66:44,22:44:1572:22:780:-50.6387,0,-121.904	1/1:66:0,66:0:0:66:2375:-213.993,-19.868,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:110:53,57:53:1900:57:2044:-151.077,0,-138.165	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:12:0,12:0:0:12:432:-39.2203,-3.61236,0	1/1:71:0,71:0:0:71:2548:-229.566,-21.3731,0	1/1:92:0,92:0:0:92:3308:-297.927,-27.6948,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:191:0,191:0:0:191:6848:-616.375,-57.4967,0	1/1:129:2,127:2:72:127:4564:-404.08,-31.9961,0	0/1:71:24,47:24:864:47:1692:-131.183,0,-56.7094	1/1:49:0,49:0:0:49:1760:-158.405,-14.7505,0	1/1:146:0,146:0:0:146:5244:-471.889,-43.9504,0	1/1:115:2,113:2:72:113:4064:-359.099,-27.7817,0	1/1:17:0,17:0:0:17:612:-55.4042,-5.11751,0	1/1:34:0,34:0:0:34:1216:-109.738,-10.235,0	1/1:55:0,55:0:0:55:1980:-178.473,-16.5567,0	0/1:30:16,14:16:576:14:499:-36.2139,0,-43.1441	1/1:71:0,71:0:0:71:2533:-228.153,-21.3731,0	0/1:49:29,20:29:1040:20:701:-48.5911,0,-79.1639	1/1:179:0,179:0:0:179:6403:-576.347,-53.8844,0	1/1:169:0,169:0:0:169:6030:-542.796,-50.8741,0	0/1:30:20,10:20:707:10:360:-23.7134,0,-54.9237	1/1:78:0,78:0:0:78:2800:-252.176,-23.4803,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:62:0,62:0:0:62:2220:-200.036,-18.6639,0	0/1:74:41,33:41:1463:33:1188:-84.9184,0,-109.689	1/1:136:0,135:0:0:135:4844:-435.738,-40.6391,0	1/1:61:0,61:0:0:61:2188:-197.178,-18.3628,0	1/1:57:0,57:0:0:57:2048:-184.589,-17.1587,0	1/1:36:1,35:1:36:35:1260:-110.09,-7.23881,0	1/1:68:0,68:0:0:68:2433:-219.213,-20.47,0	1/1:10:0,10:0:0:10:349:-31.6988,-3.0103,0	0/1:45:20,24:20:720:24:860:-64.103,0,-51.5236	0/1:48:21,27:21:756:27:972:-73.3379,0,-53.9178	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:69:34,35:34:1224:35:1251:-92.0799,0,-89.696	0/1:43:31,12:31:1112:12:428:-25.9145,0,-87.4471	1/1:162:0,162:0:0:162:5828:-524.612,-48.7669,0	1/1:77:0,77:0:0:77:2757:-248.364,-23.1793,0
chr08	24775198	.	A	G	110.789	PASS	AB=0.177961;ABP=1425.39;AC=16;AF=0.0851064;AN=188;AO=308;CIGAR=1X;DP=9256;DPB=9256;DPRA=0.989601;EPP=671.824;EPPR=19394.3;GTI=12;LEN=1;MEANALT=1;MQM=30.1688;MQMR=34.8018;NS=94;NUMALT=1;ODDS=1.39946;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=10825;QR=318525;RO=8946;RPL=0;RPP=671.824;RPPR=19394.3;RPR=308;RUN=1;SAF=0;SAP=671.824;SAR=308;SRF=0;SRP=19429;SRR=8946;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:19,1:19:680:1:36:0,-3.2844,-52.8963	0/0:108:108,0:108:3848:0:0:0,-32.5112,-313.452	0/0:200:200,0:200:7136:0:0:0,-60.206,-579.495	0/0:323:323,0:323:11470:0:0:0,-97.2327,-931.962	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.697	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.826	0/0:146:146,0:146:5221:0:0:0,-43.9504,-423.433	0/0:81:81,0:81:2872:0:0:0,-24.3834,-234.379	0/0:117:117,0:117:4169:0:0:0,-35.2205,-337.627	0/0:144:144,0:144:5133:0:0:0,-43.3483,-415.449	0/0:30:30,0:30:1072:0:0:0,-9.0309,-87.7743	0/0:104:104,0:104:3703:0:0:0,-31.3071,-300.286	0/0:59:59,0:59:2080:0:0:0,-17.7608,-168.577	0/0:44:44,0:44:1576:0:0:0,-13.2453,-128.329	0/0:59:59,0:59:2089:0:0:0,-17.7608,-169.941	0/0:43:43,0:43:1514:0:0:0,-12.9443,-123.924	0/0:25:25,0:25:891:0:0:0,-7.52575,-72.2661	0/0:28:28,0:28:991:0:0:0,-8.42884,-81.1695	0/0:14:14,0:14:504:0:0:0,-4.21442,-40.6026	0/0:210:210,0:210:7494:0:0:0,-63.2163,-609.442	0/0:244:244,0:244:8621:0:0:0,-73.4513,-697.33	0/0:28:28,0:28:995:0:0:0,-8.42884,-81.3757	0/0:138:138,0:138:4905:0:0:0,-41.5421,-398.346	0/1:94:83,11:83:2955:11:392:-0.323404,0,-209.907	0/0:18:18,0:18:648:0:0:0,-5.41854,-51.7743	0/1:225:191,34:191:6818:34:1203:-26.0773,0,-479.653	0/0:337:337,0:337:11987:0:0:0,-101.447,-972.882	0/1:35:30,5:30:1068:5:180:-2.81667,0,-75.713	0/0:279:279,0:279:9956:0:0:0,-83.9874,-807.046	0/0:134:134,0:134:4744:0:0:0,-40.338,-385.989	0/1:181:157,24:157:5601:24:859:-12.2221,0,-392.86	0/1:5:4,1:4:144:1:36:-1.39761,0,-10.279	0/0:15:15,0:15:523:0:0:0,-4.51545,-43.1913	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.12364	0/0:13:13,0:13:447:0:0:0,-3.91339,-35.3138	0/1:15:11,4:11:387:4:144:-5.6085,0,-27.6115	0/0:186:186,0:186:6641:0:0:0,-55.9916,-540.514	0/0:76:76,0:76:2708:0:0:0,-22.8783,-220.848	0/0:39:39,0:39:1381:0:0:0,-11.7402,-112.831	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.24616	0/1:144:123,21:123:4380:21:729:-10.625,0,-306.412	0/0:14:13,1:13:468:1:36:0,-1.31166,-34.7927	0/0:44:44,0:44:1584:0:0:0,-13.2453,-127.838	0/0:60:60,0:60:2148:0:0:0,-18.0618,-174.523	0/0:68:68,0:68:2427:0:0:0,-20.47,-197.075	0/0:66:66,0:66:2349:0:0:0,-19.868,-190.514	0/0:43:43,0:43:1531:0:0:0,-12.9443,-124.239	0/1:144:118,26:118:4224:26:919:-29.055,0,-296.315	0/0:128:128,0:128:4521:0:0:0,-38.5318,-368.146	0/0:158:157,0:157:5594:0:0:0,-47.2617,-454.781	0/0:112:112,0:112:3998:0:0:0,-33.7154,-324.151	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.9323	0/0:95:84,11:84:2998:11:388:0,-1.38409,-212.162	0/0:91:91,0:91:3255:0:0:0,-27.3937,-264.159	0/0:10:10,0:10:360:0:0:0,-3.0103,-28.6481	0/1:235:193,42:193:6868:42:1480:-37.7238,0,-483.847	0/0:24:24,0:24:847:0:0:0,-7.22472,-69.5146	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.0108	0/0:21:21,0:21:756:0:0:0,-6.32163,-61.4553	0/0:99:99,0:99:3518:0:0:0,-29.802,-284.754	0/0:89:89,0:89:3166:0:0:0,-26.7917,-257.767	0/0:6:6,0:6:216:0:0:0,-1.80618,-17.8539	0/0:385:385,0:385:13669:0:0:0,-115.897,-1107.38	0/0:181:181,0:181:6436:0:0:0,-54.4864,-522.051	0/0:89:78,11:78:2760:11:349:0,-0.142616,-196.045	0/0:60:60,0:60:2160:0:0:0,-18.0618,-174.234	0/0:184:184,0:184:6542:0:0:0,-55.3895,-528.476	0/0:243:243,0:243:8675:0:0:0,-73.1503,-704.719	0/0:16:16,0:16:576:0:0:0,-4.81648,-47.0693	0/0:81:81,0:81:2903:0:0:0,-24.3834,-236.426	0/0:29:29,0:29:1007:0:0:0,-8.72987,-81.9829	0/1:24:20,4:20:694:4:140:-4.16863,0,-50.14	0/0:122:122,0:122:4340:0:0:0,-36.7257,-351.455	0/1:149:117,32:117:4149:32:1123:-33.0153,0,-290.552	0/0:228:228,0:228:8103:0:0:0,-68.6348,-660.056	0/0:339:337,2:337:12059:2:72:0,-96.1143,-970.918	0/0:13:12,1:12:432:1:32:0,-1.25873,-32.1004	0/0:191:191,0:191:6795:0:0:0,-57.4967,-550.98	0/0:21:21,0:21:748:0:0:0,-6.32163,-61.2214	0/0:165:165,0:165:5898:0:0:0,-49.6699,-478.643	0/1:97:80,17:80:2847:17:603:-12.6752,0,-198.322	0/0:192:192,0:192:6847:0:0:0,-57.7978,-555.189	0/0:73:73,0:73:2608:0:0:0,-21.9752,-212.596	0/0:43:43,0:43:1527:0:0:0,-12.9443,-124.926	0/0:39:39,0:39:1386:0:0:0,-11.7402,-113.053	0/0:151:150,0:150:5375:0:0:0,-45.1545,-433.325	0/0:22:22,0:22:779:0:0:0,-6.62266,-63.1129	0/1:66:51,15:51:1824:15:523:-16.9714,0,-124.05	0/1:66:55,11:55:1948:11:396:-6.83464,0,-135.018	0/0:7:7,0:7:252:0:0:0,-2.10721,-20.4615	0/1:48:28,20:28:987:20:690:-36.1335,0,-65.1244	0/1:51:37,14:37:1304:14:495:-22.7275,0,-88.406	0/0:290:290,0:290:10314:0:0:0,-87.2987,-835.714	0/0:96:96,0:96:3429:0:0:0,-28.8989,-278.656
chr08	24775212	.	A	G	58340.2	PASS	AB=0.476979;ABP=46.1013;AC=96;AF=0.510638;AN=188;AO=4500;CIGAR=1X;DP=9399;DPB=9399;DPRA=101.054;EPP=9774.64;EPPR=10634.5;GTI=3;LEN=1;MEANALT=1.03226;MQM=34.5611;MQMR=34.6518;NS=94;NUMALT=1;ODDS=1.4293;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159447;QR=174751;RO=4896;RPL=0;RPP=9774.64;RPPR=10634.5;RPR=4500;RUN=1;SAF=0;SAP=9774.64;SAR=4500;SRF=0;SRP=10634.5;SRR=4896;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:9,10:9:320:10:360:-23.8205,0,-20.2316	0/1:112:59,53:59:2100:53:1868:-119.077,0,-137.271	0/1:204:116,87:116:4113:87:3092:-187.364,0,-272.731	0/1:329:164,165:164:5863:165:5866:-376.935,0,-377.542	0/1:7:5,2:5:180:2:72:-4.06049,0,-12.8251	0/1:8:4,4:4:144:4:144:-9.73338,0,-9.60255	0/1:145:53,92:53:1880:92:3242:-220.971,0,-108.735	0/1:87:50,37:50:1770:37:1308:-80.3318,0,-117.456	0/1:129:67,62:67:2379:62:2226:-139.332,0,-155.06	0/1:147:76,71:76:2724:71:2536:-162.279,0,-175.001	0/1:29:14,15:14:504:15:540:-35.1242,0,-32.9964	0/1:105:47,58:47:1688:58:2036:-134.183,0,-104.845	0/1:60:35,25:35:1239:25:870:-52.8463,0,-82.8608	0/1:45:26,19:26:936:19:668:-41.339,0,-62.7384	0/1:61:32,29:32:1148:29:1040:-66.0477,0,-74.8321	0/1:44:16,28:16:567:28:969:-66.5318,0,-33.1602	0/1:25:11,14:11:396:14:504:-32.7119,0,-24.9358	0/1:29:18,11:18:644:11:380:-22.9226,0,-43.9759	0/1:15:5,10:5:176:10:356:-24.1965,0,-10.2122	0/1:215:123,92:123:4401:92:3258:-201.361,0,-291.413	0/1:249:101,148:101:3615:148:5253:-350.468,0,-217.45	0/1:27:10,17:10:360:17:608:-41.6615,0,-21.4122	0/1:142:78,64:78:2795:64:2259:-141.072,0,-183.351	0/1:97:50,47:50:1796:47:1676:-104.244,0,-113.361	0/1:21:11,10:11:387:10:356:-23.0159,0,-23.6496	0/1:231:134,97:134:4783:97:3436:-205.417,0,-312.478	0/1:343:177,166:177:6337:166:5858:-372.017,0,-409.192	0/1:35:19,16:19:680:16:567:-34.3135,0,-44.0861	0/1:285:152,133:152:5419:133:4682:-294.806,0,-354.728	0/1:135:58,77:58:2071:77:2745:-182.686,0,-127.834	0/1:185:99,86:99:3536:86:3062:-189.558,0,-223.983	0/1:5:4,1:4:144:1:36:-1.39761,0,-10.279	0/1:16:2,14:2:72:14:504:-36.4097,0,-0.947398	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.12364	1/1:15:1,14:1:36:14:500:-35.948,-1.26929,0	0/1:12:6,6:6:216:6:216:-12.8391,0,-14.0654	0/1:191:98,93:98:3484:93:3313:-212.038,0,-226.406	0/1:77:38,39:38:1360:39:1376:-88.7136,0,-87.7623	0/1:41:20,21:20:720:21:748:-49.0601,0,-46.3024	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	0/1:148:72,76:72:2571:76:2669:-163.224,0,-158.815	0/1:15:11,4:11:396:4:136:-6.65274,0,-27.4474	0/1:46:23,23:23:824:23:815:-51.9936,0,-52.9763	0/1:62:28,34:28:1000:34:1193:-78.8957,0,-63.0619	0/1:67:38,29:38:1364:29:994:-62.5295,0,-89.8336	0/1:65:10,55:10:360:55:1968:-139.858,0,-9.9731	0/1:40:23,17:23:820:17:590:-36.532,0,-54.9657	0/1:140:79,61:79:2831:61:2152:-130.147,0,-184.856	0/1:128:77,51:77:2759:51:1762:-106.092,0,-185.67	0/1:160:94,66:94:3308:66:2363:-143.847,0,-221.578	0/1:112:39,73:39:1378:73:2607:-177.627,0,-78.6438	0/1:5:1,4:1:36:4:144:-10.5056,0,-1.74101	0/1:95:68,27:68:2432:27:951:-44.3018,0,-164.996	0/1:90:54,36:54:1936:36:1292:-77.5031,0,-129.961	0/1:10:9,1:9:320:1:36:-0.235859,0,-22.5535	0/1:240:127,113:127:4524:113:3939:-236.482,0,-290.315	0/1:23:9,14:9:324:14:504:-34.5108,0,-19.4716	0/1:4:2,2:2:72:2:72:-4.96358,0,-4.96358	0/1:21:11,10:11:396:10:356:-22.3905,0,-26.0286	0/1:97:39,58:39:1395:58:2062:-136.31,0,-84.2932	0/1:92:48,44:48:1707:44:1548:-97.0377,0,-109.995	0/1:6:3,3:3:108:3:108:-7.28306,0,-7.28306	0/1:392:184,208:184:6578:208:7390:-480.774,0,-414.583	0/1:183:106,76:106:3774:76:2702:-163.748,0,-251.546	0/1:92:50,42:50:1768:42:1512:-89.8698,0,-113.795	0/1:63:39,24:39:1392:24:829:-49.0687,0,-93.3534	0/1:187:108,79:108:3860:79:2823:-171.632,0,-253.848	0/1:246:127,119:127:4518:119:4222:-269.457,0,-292.979	0/1:16:9,7:9:320:7:252:-15.9589,0,-21.5993	0/1:84:45,39:45:1597:39:1380:-85.7864,0,-105.057	0/1:30:12,18:12:432:18:615:-40.944,0,-26.3522	0/1:26:20,6:20:692:6:212:-9.41522,0,-49.0785	0/1:122:53,69:53:1891:69:2432:-161.605,0,-117.245	0/1:151:80,71:80:2868:71:2519:-145.177,0,-183.887	0/1:235:116,119:116:4114:119:4184:-270.743,0,-263.955	0/1:341:201,139:201:7211:139:4983:-301.507,0,-481.041	0/1:13:10,3:10:341:3:108:-4.6999,0,-23.7776	0/1:191:107,84:107:3836:84:2985:-184.776,0,-253.376	1/1:21:1,20:1:36:20:698:-54.151,-3.07547,0	0/1:160:112,48:112:4024:48:1716:-90.5445,0,-278.049	0/1:96:61,35:61:2183:35:1230:-63.3311,0,-144.573	0/1:194:107,87:107:3840:87:3112:-193.312,0,-253.202	0/1:75:43,32:43:1540:32:1144:-69.6754,0,-103.58	0/1:44:32,12:32:1144:12:432:-22.2663,0,-78.6763	0/1:41:20,21:20:716:21:729:-46.025,0,-46.101	0/1:157:86,71:86:3053:71:2501:-157.158,0,-200.609	0/1:23:13,10:13:455:10:351:-21.1722,0,-30.5142	0/1:68:32,36:32:1144:36:1267:-74.6993,0,-70.9234	0/1:66:41,25:41:1444:25:879:-46.783,0,-94.2231	0/1:6:4,2:4:144:2:72:-4.36152,0,-10.2046	0/1:45:20,25:20:703:25:888:-53.8822,0,-42.8728	0/1:50:34,16:34:1216:16:572:-29.3354,0,-81.2798	0/1:293:133,160:133:4754:160:5675:-370.823,0,-295.791	0/1:98:36,62:36:1283:62:2206:-148.096,0,-75.4412
chr08	24775231	.	G	A	69026.4	PASS	AB=0.522432;ABP=44.4145;AC=92;AF=0.489362;AN=188;AO=4952;CIGAR=1X;DP=9511;DPB=9511;DPRA=102.258;EPP=10704.1;EPPR=9526.27;GTI=1;LEN=1;MEANALT=1.03226;MQM=34.664;MQMR=34.4892;NS=94;NUMALT=1;ODDS=0.119645;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177465;QR=163012;RO=4556;RPL=4946;RPP=10704.1;RPPR=9526.27;RPR=6;RUN=1;SAF=0;SAP=10756.1;SAR=4952;SRF=0;SRP=9896.24;SRR=4556;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:10,10:10:360:10:360:-23.0554,0,-23.5194	0/1:113:54,59:54:1940:59:2103:-137.417,0,-123.998	0/1:208:89,119:89:3192:119:4268:-282.982,0,-194.255	0/1:332:167,165:167:5960:165:5916:-380.592,0,-381.761	0/1:9:4,5:4:144:5:180:-12.2231,0,-7.86639	0/1:10:6,4:6:216:4:144:-9.00049,0,-12.1288	0/1:147:92,55:92:3296:55:1980:-115.775,0,-223.587	0/1:85:36,49:36:1288:49:1756:-116.698,0,-79.0818	0/1:124:60,64:60:2140:64:2293:-148.964,0,-134.528	0/1:148:72,75:72:2569:75:2686:-172.27,0,-164.544	0/1:29:15,14:15:540:14:500:-32.6427,0,-35.1242	0/1:105:58,47:58:2075:47:1677:-103.997,0,-136.758	0/1:61:25,36:25:892:36:1296:-86.3533,0,-51.6284	0/1:46:20,26:20:708:26:932:-62.2362,0,-44.0015	0/1:61:29,32:29:1044:32:1152:-75.1842,0,-66.2487	0/1:44:28,16:28:1004:16:572:-33.5113,0,-68.5878	0/1:24:13,11:13:468:11:388:-24.8323,0,-30.0907	0/1:29:11,18:11:396:18:648:-44.1774,0,-23.7317	0/1:15:10,5:10:360:5:180:-10.4169,0,-24.399	0/1:215:91,124:91:3272:124:4455:-295.434,0,-201.538	0/1:256:153,103:153:5463:103:3670:-220.554,0,-361.652	0/1:29:17,12:17:608:12:432:-26.6533,0,-41.0594	0/1:144:65,79:65:2310:79:2840:-186.221,0,-144.44	0/1:96:47,49:47:1688:49:1755:-110.571,0,-105.147	0/1:20:10,10:10:356:10:360:-22.3757,0,-23.317	0/1:234:96,138:96:3431:138:4923:-323.079,0,-204.408	0/1:346:166,180:166:5944:180:6421:-415.566,0,-376.822	0/1:36:17,19:17:612:19:680:-43.785,0,-37.247	0/1:285:131,154:131:4683:154:5519:-361.236,0,-292.155	0/1:137:79,58:79:2824:58:2084:-127.983,0,-188.127	0/1:186:88,98:88:3168:98:3520:-222.166,0,-197.002	0/1:5:1,4:1:36:4:144:-10.279,0,-1.39761	0/1:16:14,2:14:496:2:72:-0.947398,0,-36.0061	1/1:1:0,1:0:0:1:36:-3.12364,-0.30103,0	0/0:15:14,1:14:491:1:36:0,-1.26929,-35.5952	0/1:13:7,6:7:248:6:216:-13.7643,0,-14.7936	0/1:192:95,97:95:3420:97:3488:-225.636,0,-219.52	0/1:77:39,38:39:1378:38:1364:-87.9631,0,-89.1226	0/1:42:21,21:21:756:21:756:-48.8121,0,-49.1617	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.24616	0/1:153:77,76:77:2756:76:2710:-168.005,0,-167.497	0/1:16:5,11:5:180:11:396:-27.1464,0,-8.25984	0/1:46:24,22:24:851:22:792:-50.6404,0,-54.3708	0/1:61:33,28:33:1175:28:1004:-63.5639,0,-76.9607	0/1:68:30,38:30:1068:38:1364:-89.5325,0,-66.1547	0/1:68:58,10:58:2084:10:360:-9.07001,0,-148.612	0/1:42:19,23:19:680:23:828:-54.766,0,-42.8783	0/1:143:63,80:63:2268:80:2861:-186.466,0,-137.497	0/1:132:53,79:53:1883:79:2840:-190.859,0,-113.614	0/1:157:64,93:64:2304:93:3311:-222.205,0,-138.369	0/1:110:71,39:71:2524:39:1400:-80.5477,0,-172.496	0/1:5:4,1:4:144:1:36:-1.74101,0,-10.5056	0/1:97:27,70:27:963:70:2508:-169.34,0,-44.2863	0/1:89:34,55:34:1220:55:1960:-132.525,0,-71.9609	0/1:10:1,9:1:36:9:320:-22.5535,0,-0.235859	0/1:243:112,130:112:3987:130:4657:-298.888,0,-237.905	0/1:22:14,8:14:500:8:288:-16.8507,0,-34.61	0/1:4:2,2:2:72:2:72:-4.96358,0,-4.96358	0/1:23:11,12:11:392:12:432:-28.2369,0,-24.5423	0/1:98:57,41:57:2040:41:1472:-90.5028,0,-135.395	0/1:93:45,48:45:1612:48:1720:-110.317,0,-100.362	0/1:6:3,3:3:108:3:108:-7.28306,0,-7.28306	0/1:401:215,186:215:7687:186:6670:-418.854,0,-501.658	0/1:182:76,106:76:2724:106:3800:-253.37,0,-165.277	0/1:90:40,50:40:1436:50:1796:-116.124,0,-86.0061	0/1:61:23,38:23:820:38:1368:-91.5956,0,-48.4525	0/1:192:81,111:81:2895:111:3967:-260.463,0,-175.661	0/1:248:120,128:120:4299:128:4596:-297.558,0,-273.277	0/1:16:7,9:7:252:9:324:-21.802,0,-15.9589	0/1:86:39,47:39:1387:47:1684:-111.347,0,-85.7492	0/1:30:18,12:18:648:12:432:-26.3522,0,-43.0649	0/1:25:6,19:6:216:19:680:-48.07,0,-9.87888	0/1:125:71,54:71:2548:54:1936:-119.947,0,-168.289	0/1:153:71,82:71:2535:82:2923:-188.468,0,-145.092	0/1:246:125,121:125:4459:121:4326:-277.073,0,-283.855	0/1:345:142,203:142:5088:203:7300:-486.25,0,-308.831	0/1:13:3,10:3:108:10:347:-24.2604,0,-4.6999	0/1:193:85,108:85:3042:108:3888:-256.497,0,-187.901	0/0:21:20,1:20:720:1:36:0,-3.07547,-55.4563	0/1:165:50,115:50:1792:115:4120:-283.928,0,-95.0833	0/1:99:35,63:35:1256:63:2268:-150.021,0,-62.9868	0/1:199:88,111:88:3148:111:3972:-262.558,0,-194.514	0/1:77:34,43:34:1224:43:1544:-103.179,0,-74.5806	0/1:44:13,31:13:468:31:1116:-76.1565,0,-23.7795	0/1:40:20,20:20:720:20:720:-46.6034,0,-44.861	0/1:157:72,85:72:2563:85:3056:-200.271,0,-157.908	0/1:23:10,13:10:360:13:468:-31.2698,0,-21.3652	0/1:67:35,32:35:1256:32:1144:-71.2245,0,-73.066	0/1:70:28,42:28:1004:42:1508:-97.5592,0,-51.1732	0/1:6:2,4:2:72:4:144:-10.2046,0,-4.36152	0/1:47:28,19:28:1004:19:684:-40.2831,0,-60.3003	0/1:51:16,35:16:576:35:1247:-83.5499,0,-29.0457	0/1:297:163,134:163:5822:134:4792:-297.675,0,-380.529	0/1:100:62,38:62:2224:38:1368:-81.4337,0,-147.861
chr08	24775237	.	A	C	3920.53	PASS	AB=0.291915;ABP=696.148;AC=23;AF=0.12234;AN=188;AO=547;CIGAR=1X;DP=9486;DPB=9486;DPRA=0.965273;EPP=1190.81;EPPR=19139;GTI=8;LEN=1;MEANALT=1.03571;MQM=32.841;MQMR=34.6803;NS=94;NUMALT=1;ODDS=0.810434;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=19503;QR=320025;RO=8936;RPL=547;RPP=1190.81;RPPR=19139;RPR=0;RUN=1;SAF=0;SAP=1190.81;SAR=547;SRF=0;SRP=19407.3;SRR=8936;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:712:0:0:0,-6.0206,-57.8912	0/0:111:111,0:111:3988:0:0:0,-33.4143,-324.232	0/0:206:206,0:206:7367:0:0:0,-62.0122,-595.958	0/0:329:329,0:329:11793:0:0:0,-99.0389,-954.097	0/0:8:8,0:8:288:0:0:0,-2.40824,-22.2812	0/0:11:11,0:11:396:0:0:0,-3.31133,-28.3589	0/0:146:146,0:146:5236:0:0:0,-43.9504,-424.48	0/0:84:84,0:84:2999:0:0:0,-25.2865,-242.829	0/0:126:125,1:125:4484:1:36:0,-34.8061,-359.311	0/0:146:146,0:146:5252:0:0:0,-43.9504,-424.644	0/0:30:30,0:30:1076:0:0:0,-9.0309,-87.9753	0/0:106:106,0:106:3803:0:0:0,-31.9092,-307.533	0/0:62:62,0:62:2210:0:0:0,-18.6639,-176.826	0/0:46:46,0:46:1652:0:0:0,-13.8474,-134.372	0/0:61:61,0:61:2187:0:0:0,-18.3628,-177.285	0/0:42:42,0:42:1500:0:0:0,-12.6433,-122.223	0/0:25:25,0:25:900:0:0:0,-7.52575,-72.378	0/0:29:29,0:29:1044:0:0:0,-8.72987,-85.0442	0/0:14:14,0:14:500:0:0:0,-4.21442,-40.4008	0/0:215:215,0:215:7716:0:0:0,-64.7214,-626.001	0/0:251:250,0:250:8899:0:0:0,-75.2575,-716.915	0/0:28:28,0:28:1000:0:0:0,-8.42884,-81.7257	0/0:141:141,0:141:5047:0:0:0,-42.4452,-409.112	0/1:98:75,23:75:2684:23:828:-35.4707,0,-184.611	0/0:20:20,0:20:707:0:0:0,-6.0206,-56.7335	0/1:235:168,67:168:5998:67:2374:-114.986,0,-413.399	0/0:348:348,0:348:12436:0:0:0,-104.758,-1004.97	0/1:35:26,9:26:932:9:320:-14.9161,0,-63.6717	0/0:288:288,0:288:10299:0:0:0,-86.6966,-832.644	0/0:138:137,1:137:4916:1:36:0,-38.4185,-395.656	0/1:186:125,61:125:4488:61:2192:-114.334,0,-304.413	0/1:5:3,2:3:108:2:72:-4.42976,0,-7.26359	0/0:16:16,0:16:576:0:0:0,-4.81648,-46.6841	1/1:1:0,1:0:0:1:36:-3.12364,-0.30103,0	0/0:15:15,0:15:540:0:0:0,-4.51545,-42.3185	0/1:12:10,2:10:360:2:72:-2.32255,0,-24.0714	0/0:191:191,0:191:6841:0:0:0,-57.4967,-556.297	0/0:76:76,0:76:2724:0:0:0,-22.8783,-221.69	0/0:41:41,0:41:1476:0:0:0,-12.3422,-120.125	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.24616	0/1:152:101,51:101:3620:51:1800:-95.1448,0,-237.572	0/1:15:12,3:12:432:3:108:-4.23074,0,-30.28	0/0:45:45,0:45:1612:0:0:0,-13.5463,-130.134	0/0:62:62,0:62:2215:0:0:0,-18.6639,-179.85	0/0:69:69,0:69:2476:0:0:0,-20.7711,-199.947	0/0:66:66,0:66:2368:0:0:0,-19.868,-191.763	0/0:43:43,0:43:1535:0:0:0,-12.9443,-124.979	0/1:145:116,29:116:4168:29:1040:-38.0544,0,-291.159	0/0:130:130,0:130:4623:0:0:0,-39.1339,-376.556	0/0:158:158,0:158:5652:0:0:0,-47.5627,-458.028	0/0:113:113,0:113:4033:0:0:0,-34.0164,-326.964	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.9323	0/1:96:59,37:59:2089:37:1332:-74.4067,0,-135.896	0/0:92:92,0:92:3308:0:0:0,-27.6948,-267.571	0/1:10:2,8:2:72:8:288:-19.7923,0,-3.1574	0/1:240:188,52:188:6719:52:1868:-72.8066,0,-460.8	0/0:24:22,2:22:788:2:72:0,-1.28981,-58.7108	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.0108	0/0:22:22,0:22:792:0:0:0,-6.62266,-63.5876	0/0:98:98,0:98:3501:0:0:0,-29.5009,-282.422	0/0:89:89,0:89:3184:0:0:0,-26.7917,-254.806	0/0:6:6,0:6:216:0:0:0,-1.80618,-17.8539	0/0:400:400,0:400:14307:0:0:0,-120.412,-1157.4	0/0:182:179,2:179:6440:2:72:0,-49.0581,-515.525	0/1:90:65,25:65:2323:25:900:-43.5015,0,-156.611	0/0:62:62,0:62:2220:0:0:0,-18.6639,-179.063	0/0:190:190,0:190:6803:0:0:0,-57.1957,-546.142	0/0:252:251,1:251:9028:1:36:0,-72.7359,-728.441	0/0:15:15,0:15:540:0:0:0,-4.51545,-44.1478	0/0:84:84,0:84:3012:0:0:0,-25.2865,-244.957	0/0:29:29,0:29:1044:0:0:0,-8.72987,-84.2347	0/1:24:18,6:18:639:6:216:-9.95529,0,-45.5182	0/0:128:128,0:128:4558:0:0:0,-38.5318,-368.158	0/1:151:115,36:115:4085:36:1254:-53.5574,0,-271.545	0/0:242:242,0:242:8652:0:0:0,-72.8493,-697.973	0/0:342:341,0:341:12260:0:0:0,-102.651,-991.357	0/1:13:8,5:8:284:5:165:-9.41675,0,-19.1152	0/0:190:189,1:189:6784:1:36:0,-54.0721,-545.624	0/0:21:21,0:21:747:0:0:0,-6.32163,-61.0722	0/0:164:164,0:164:5892:0:0:0,-49.3689,-475.988	0/1:101:63,38:63:2260:38:1330:-74.392,0,-143.188	0/0:198:198,0:198:7089:0:0:0,-59.6039,-573.359	0/0:78:78,0:78:2804:0:0:0,-23.4803,-226.016	0/0:45:45,0:45:1620:0:0:0,-13.5463,-129.033	0/0:41:41,0:41:1468:0:0:0,-12.3422,-117.748	0/0:157:157,0:157:5636:0:0:0,-47.2617,-453.034	0/0:22:22,0:22:792:0:0:0,-6.62266,-63.8659	0/1:68:55,13:55:1968:13:464:-16.2278,0,-129.792	0/1:70:34,36:34:1220:36:1296:-80.1881,0,-68.7094	0/0:7:7,0:7:252:0:0:0,-2.10721,-20.4615	0/1:48:37,11:37:1320:11:396:-16.657,0,-86.0132	0/1:49:25,24:25:891:24:864:-52.9033,0,-56.4805	0/0:296:296,0:296:10598:0:0:0,-89.1049,-855.239	0/0:100:100,0:100:3592:0:0:0,-30.103,-289.138
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chr08	24944125	.	G	T	10202.7	PASS	AB=0.468336;ABP=14.8367;AC=22;AF=0.117021;AN=188;AO=655;CIGAR=1X;DP=7259;DPB=7259;DPRA=1.08316;EPP=1425.32;EPPR=14332.6;GTI=1;LEN=1;MEANALT=1.0303;MQM=59.6351;MQMR=59.982;NS=94;NUMALT=1;ODDS=3.23184;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23448;QR=235773;RO=6599;RPL=655;RPP=1425.32;RPPR=14297.8;RPR=0;RUN=1;SAF=655;SAP=1425.32;SAR=0;SRF=6595;SRP=14297.8;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:95:95,0:95:3381:0:0:0,-28.5978,-304.505	0/0:130:130,0:130:4647:0:0:0,-39.1339,-418.392	0/0:171:171,0:171:6131:0:0:0,-51.4761,-551.888	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:151:151,0:151:5389:0:0:0,-45.4555,-485.128	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.556	0/0:71:70,1:70:2511:1:36:0,-17.7749,-222.643	0/0:108:108,0:108:3860:0:0:0,-32.5112,-347.596	0/0:66:66,0:66:2328:0:0:0,-19.868,-209.778	0/0:71:71,0:71:2523:0:0:0,-21.3731,-227.322	0/0:94:94,0:94:3343:0:0:0,-28.2968,-301.088	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.655	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.282	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/0:79:79,0:79:2786:0:0:0,-23.7814,-250.979	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/0:174:174,0:174:6232:0:0:0,-52.3792,-560.975	0/0:152:150,0:150:5372:0:0:0,-45.1545,-483.252	0/0:105:104,1:104:3690:1:36:0,-28.0099,-328.706	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:29:9,20:9:320:20:712:-55.6749,0,-20.4125	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:208:125,83:125:4471:83:2964:-204.374,0,-339.945	0/0:164:162,2:162:5791:2:72:0,-42.5322,-514.468	0/1:41:22,19:22:773:19:684:-49.5481,0,-57.5473	0/0:222:222,0:222:7952:0:0:0,-66.8287,-715.699	0/0:101:97,4:97:3480:4:144:0,-17.0904,-300.096	0/1:70:39,31:39:1400:31:1116:-79.6656,0,-105.227	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:7:1,6:1:36:6:212:-17.2988,0,-1.49106	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:12:8,4:8:279:4:144:-9.68452,0,-21.8352	0/0:188:188,0:188:6703:0:0:0,-56.5936,-603.346	0/0:128:128,0:128:4588:0:0:0,-38.5318,-413.084	0/0:85:84,1:84:2998:1:36:0,-21.9893,-266.453	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:69:28,41:28:1004:41:1468:-111.625,0,-69.9048	0/1:54:30,24:30:1067:24:864:-61.8177,0,-80.0856	0/0:45:45,0:45:1588:0:0:0,-13.5463,-143.21	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.235	0/0:99:99,0:99:3518:0:0:0,-29.802,-316.831	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/1:135:83,52:83:2975:52:1860:-127.038,0,-227.343	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:88:87,0:87:3106:0:0:0,-26.1896,-279.406	0/0:181:181,0:181:6462:0:0:0,-54.4864,-581.664	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:110:53,56:53:1896:56:1997:-146.811,0,-137.746	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:15:10,5:10:356:5:180:-12.0283,0,-27.8658	0/1:86:40,46:40:1436:46:1656:-123.435,0,-103.649	0/0:11:10,0:10:360:0:0:0,-3.0103,-32.3845	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:121:121,0:121:4322:0:0:0,-36.4246,-389.156	0/0:147:146,1:146:5231:1:36:0,-40.6531,-467.328	0/1:42:27,15:27:972:15:532:-35.5633,0,-75.1546	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:104:100,4:100:3544:4:144:0,-17.9935,-305.85	0/0:94:94,0:94:3367:0:0:0,-28.2968,-303.245	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:108:106,2:106:3801:2:72:0,-25.6745,-335.445	0/1:30:18,12:18:633:12:432:-30.1903,0,-48.2642	0/0:109:109,0:109:3907:0:0:0,-32.8123,-351.822	0/0:166:165,1:165:5879:1:36:0,-46.3727,-525.622	0/1:49:39,10:39:1396:10:360:-17.9938,0,-111.189	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:90:89,1:89:3195:1:36:0,-23.4944,-284.174	0/1:76:45,31:45:1620:31:1104:-76.5939,0,-123.212	0/0:183:182,1:182:6519:1:36:0,-51.4902,-583.127	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.142	0/0:48:48,0:48:1702:0:0:0,-14.4494,-153.464	0/0:82:82,0:82:2923:0:0:0,-24.6845,-263.305	0/0:132:132,0:132:4710:0:0:0,-39.736,-423.284	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.793	0/1:87:39,48:39:1392:48:1720:-128.861,0,-99.3894	0/1:70:37,33:37:1319:33:1180:-85.4356,0,-97.9391	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:74:33,41:33:1184:41:1472:-110.493,0,-84.5921	0/1:75:24,51:24:852:51:1819:-141.409,0,-54.4231	0/0:47:47,0:47:1677:0:0:0,-14.1484,-151.215	0/0:105:105,0:105:3763:0:0:0,-31.6081,-338.868
chr08	24944167	.	C	T	10608	PASS	AB=0.471182;ABP=13.0229;AC=21;AF=0.111702;AN=188;AO=663;CIGAR=1X;DP=7245;DPB=7245;DPRA=0.882728;EPP=1434.02;EPPR=14148.3;GTI=1;LEN=1;MEANALT=1.03704;MQM=59.9925;MQMR=59.9758;NS=94;NUMALT=1;ODDS=2.41797;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23677;QR=233764;RO=6578;RPL=1;RPP=1434.02;RPPR=14157;RPR=662;RUN=1;SAF=0;SAP=1442.7;SAR=663;SRF=1;SRP=14278.3;SRR=6577;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/0:104:103,1:103:3671:1:36:0,-27.7088,-326.996	0/0:131:131,0:131:4683:0:0:0,-39.4349,-421.631	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1447	0/0:67:67,0:67:2382:0:0:0,-20.169,-214.637	0/0:167:167,0:167:5921:0:0:0,-50.272,-533.001	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.646	0/0:119:119,0:119:4217:0:0:0,-35.8226,-379.701	0/0:108:108,0:108:3792:0:0:0,-32.5112,-341.477	0/0:82:82,0:82:2912:0:0:0,-24.6845,-262.314	0/0:142:142,0:142:5056:0:0:0,-42.7463,-455.186	0/0:64:64,0:64:2243:0:0:0,-19.2659,-202.132	0/0:81:81,0:81:2875:0:0:0,-24.3834,-258.985	0/0:131:131,0:131:4662:0:0:0,-39.4349,-418.967	0/0:90:90,0:90:3190:0:0:0,-27.0927,-287.322	0/0:92:92,0:92:3230:0:0:0,-27.6948,-290.521	0/0:156:154,0:154:5491:0:0:0,-46.3586,-493.979	0/0:88:88,0:88:3139:0:0:0,-26.4906,-282.736	0/0:100:100,0:100:3563:0:0:0,-30.103,-320.879	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:46:21,25:21:752:25:900:-67.4736,0,-54.1589	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/1:174:116,57:116:4133:57:2036:-131.074,0,-319.714	0/0:128:126,2:126:4485:2:72:0,-31.6951,-396.983	0/1:46:21,25:21:734:25:900:-67.4736,0,-52.533	0/0:174:174,0:174:6209:0:0:0,-52.3792,-558.907	0/0:66:63,3:63:2238:3:108:0,-9.79281,-191.551	0/1:35:15,20:15:536:20:711:-53.7796,0,-38.0388	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4773	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/0:199:199,0:199:7017:0:0:0,-59.905,-631.597	0/0:104:104,0:104:3718:0:0:0,-31.3071,-334.82	0/0:126:126,0:126:4455:0:0:0,-37.9298,-401.123	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:81:46,35:46:1632:35:1260:-89.3221,0,-122.785	0/1:49:19,30:19:662:30:1057:-80.6885,0,-45.1519	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:70:69,1:69:2471:1:36:0,-17.4738,-219.045	0/0:63:62,1:62:2171:1:36:0,-15.3666,-192.056	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:91:91,0:91:3263:0:0:0,-27.3937,-293.889	0/1:99:61,38:61:2170:38:1368:-93.6189,0,-165.763	0/0:78:78,0:78:2786:0:0:0,-23.4803,-250.98	0/0:143:143,0:143:5092:0:0:0,-43.0473,-458.424	0/0:123:123,0:123:4383:0:0:0,-37.0267,-394.645	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:60:41,19:41:1455:19:680:-43.4674,0,-113.183	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:68:43,25:43:1518:25:900:-60.851,0,-116.442	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:172:172,0:172:6045:0:0:0,-51.7772,-544.158	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:104:103,0:103:3692:0:0:0,-31.0061,-332.122	0/0:150:150,0:150:5328:0:0:0,-45.1545,-479.656	0/1:49:24,25:24:864:25:896:-66.2099,0,-63.3321	0/0:70:70,0:70:2475:0:0:0,-21.0721,-223.002	0/0:96:96,0:96:3430:0:0:0,-28.8989,-308.913	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:82:82,0:82:2906:0:0:0,-24.6845,-261.776	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:117:117,0:117:4178:0:0:0,-35.2205,-376.202	0/1:32:8,24:8:284:24:864:-68.4496,0,-16.2704	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.572	0/1:41:17,24:17:608:24:852:-64.6582,0,-42.7098	0/0:101:101,0:101:3547:0:0:0,-30.404,-319.442	0/0:95:95,0:95:3371:0:0:0,-28.5978,-303.605	0/1:101:47,54:47:1657:54:1919:-142.582,0,-119.011	0/0:69:69,0:69:2447:0:0:0,-20.7711,-220.485	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:82:81,1:81:2891:1:36:0,-21.0862,-256.828	0/1:68:44,24:44:1572:24:849:-56.2553,0,-121.302	0/0:159:159,0:159:5708:0:0:0,-47.8638,-513.836	0/0:92:92,0:92:3259:0:0:0,-27.6948,-293.04	0/0:74:74,0:74:2619:0:0:0,-22.2762,-235.956	0/0:83:83,0:83:2947:0:0:0,-24.9855,-265.465	0/0:127:127,0:127:4508:0:0:0,-38.2308,-405.89	0/0:41:41,0:41:1447:0:0:0,-12.3422,-130.525	0/1:90:39,51:39:1340:51:1820:-136.989,0,-93.7997	0/1:78:42,36:42:1491:36:1279:-91.9321,0,-111.003	0/0:134:134,0:134:4780:0:0:0,-40.338,-430.356	0/1:185:100,85:100:3532:85:3027:-216.97,0,-262.398	0/1:68:18,50:18:648:50:1787:-140.642,0,-38.1818	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:99:99,0:99:3504:0:0:0,-29.802,-315.571
chr08	24944194	.	AGATAA	AGACAG,AGATAG	160978	PASS	AB=0.532292,0.46061;ABP=15.7725,21.9987;AC=167,21;AF=0.888298,0.111702;AN=188;AO=6693,659;CIGAR=3M1X1M1X,5M1X;DP=7416;DPB=7416.17;DPRA=0,0.948652;EPP=14536.7,1434.01;EPPR=5.18177;GTI=2;LEN=6,1;MEANALT=1.8617,2.40741;MQM=59.97,59.9909;MQMR=60;NS=94;NUMALT=2;ODDS=1.20473;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.333333;PQA=0,0;PQR=0;PRO=0.333333;QA=234534,23480;QR=36;RO=1;RPL=6693,659;RPP=14536.7,1434.01;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=14536.7,1434.01;SAR=6693,659;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12,0:0:0:12,0:407,0:-36.9552,-3.61236,0,-36.9552,-3.61236,-36.9552	1/1:92:0,91,0:0:0:91,0:3206,0:-288.532,-27.3937,0,-288.532,-27.3937,-288.532	1/1:106:0,105,1:0:0:105,1:3690,36:-331.628,-31.6082,0,-328.691,-28.3109,-328.39	1/1:138:0,137,0:0:0:137,0:4804,0:-432.181,-41.2411,0,-432.181,-41.2411,-432.181	1/1:32:0,32,0:0:0:32,0:1144,0:-103.27,-9.63296,0,-103.27,-9.63296,-103.27	1/1:29:0,29,0:0:0:29,0:1028,0:-92.8243,-8.72987,0,-92.8243,-8.72987,-92.8243	1/1:68:0,68,0:0:0:68,0:2374,0:-213.917,-20.47,0,-213.917,-20.47,-213.917	1/1:176:0,175,0:0:0:175,0:6106,0:-549.266,-52.6803,0,-549.266,-52.6803,-549.266	1/1:43:0,42,0:0:0:42,0:1458,0:-131.19,-12.6433,0,-131.19,-12.6433,-131.19	1/1:101:0,100,0:0:0:100,0:3517,0:-316.382,-30.103,0,-316.382,-30.103,-316.382	1/1:121:0,119,1:0:0:119,1:4155,36:-373.771,-35.8226,0,-370.834,-32.8852,-370.533	1/1:108:0,107,0:0:0:107,0:3769,0:-339.052,-32.2102,0,-339.052,-32.2102,-339.052	1/1:82:0,82,0:0:0:82,0:2933,0:-264.204,-24.6845,0,-264.204,-24.6845,-264.204	1/1:146:0,144,0:0:0:144,0:5069,0:-455.999,-43.3483,0,-455.999,-43.3483,-455.999	1/1:64:0,63,0:0:0:63,0:2220,0:-199.704,-18.9649,0,-199.704,-18.9649,-199.704	1/1:84:0,83,0:0:0:83,0:2923,0:-262.985,-24.9855,0,-262.985,-24.9855,-262.985	1/1:133:0,131,0:0:0:131,0:4600,0:-413.891,-39.4349,0,-413.891,-39.4349,-413.891	1/1:90:0,90,0:0:0:90,0:3144,0:-283.186,-27.0927,0,-283.186,-27.0927,-283.186	1/1:96:0,95,0:0:0:95,0:3351,0:-301.212,-28.5979,0,-301.212,-28.5979,-301.212	1/1:160:0,159,0:0:0:159,0:5571,0:-501.164,-47.8638,0,-501.164,-47.8638,-501.164	1/1:90:0,89,0:0:0:89,0:3058,0:-275.18,-26.7917,0,-275.18,-26.7917,-275.18	1/1:103:0,103,0:0:0:103,0:3587,0:-323.04,-31.0061,0,-323.04,-31.0061,-323.04	1/1:8:0,7,0:0:0:7,0:247,0:-22.2142,-2.10721,0,-22.2142,-2.10721,-22.2142	1/2:48:0,23,23:0:0:23,23:798,805:-130.349,-65.4848,-58.5611,-64.8538,0,-57.9301	1/1:51:0,51,0:0:0:51,0:1782,0:-160.659,-15.3525,0,-160.659,-15.3525,-160.659	1/2:178:0,120,58:0:0:120,58:4185,2076:-510.008,-169.651,-133.527,-340.712,0,-323.252	1/1:130:0,129,1:0:0:129,1:4515,36:-406.162,-38.8329,0,-403.224,-35.5356,-402.923	1/2:46:0,21,25:0:0:21,25:732,888:-132.241,-72.7133,-66.3916,-59.8792,0,-52.3535	1/1:178:0,178,0:0:0:178,0:6190,0:-557.204,-53.5833,0,-557.204,-53.5833,-557.204	1/1:71:0,68,3:0:0:68,3:2354,104:-211.751,-20.47,0,-203.298,-11.6703,-202.395	1/2:36:0,16,20:0:0:16,20:550,716:-103.405,-58.7471,-53.9306,-45.0074,0,-38.9868	1/2:3:0,2,1:0:0:2,1:67,32:-8.33415,-2.89828,-2.29622,-5.76078,0,-5.45975	1/1:27:0,27,0:0:0:27,0:945,0:-85.3614,-8.12781,0,-85.3614,-8.12781,-85.3614	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/1:206:0,203,0:0:0:203,0:7115,0:-640.058,-61.1091,0,-640.058,-61.1091,-640.058	1/1:109:0,105,0:0:0:105,0:3688,0:-331.791,-31.6082,0,-331.791,-31.6082,-331.791	1/1:130:0,130,0:0:0:130,0:4598,0:-413.988,-39.1339,0,-413.988,-39.1339,-413.988	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:82:0,47,35:0:0:47,35:1625,1260:-235.201,-103.169,-89.021,-132.385,0,-121.849	1/2:50:0,20,30:0:0:20,30:681,1072:-142.999,-87.7616,-81.741,-55.5841,0,-46.5532	1/1:52:0,52,0:0:0:52,0:1810,0:-163.179,-15.6536,0,-163.179,-15.6536,-163.179	1/1:70:0,70,0:0:0:70,0:2469,0:-222.462,-21.0721,0,-222.462,-21.0721,-222.462	1/1:64:0,62,0:0:0:62,0:2172,0:-195.459,-18.6639,0,-195.459,-18.6639,-195.459	1/1:69:0,69,0:0:0:69,0:2380,0:-214.455,-20.7711,0,-214.455,-20.7711,-214.455	1/1:91:0,88,0:0:0:88,0:3117,0:-280.484,-26.4906,0,-280.484,-26.4906,-280.484	1/2:104:0,65,39:0:0:65,39:2272,1396:-299.016,-114.199,-94.632,-185.172,0,-173.432	1/1:78:0,77,0:0:0:77,0:2700,0:-243.032,-23.1793,0,-243.032,-23.1793,-243.032	1/1:145:0,143,0:0:0:143,0:5023,0:-451.934,-43.0473,0,-451.934,-43.0473,-451.934	1/1:130:0,127,3:0:0:127,3:4460,108:-401.216,-38.2308,0,-392.404,-29.0587,-391.501	1/1:10:0,10,0:0:0:10,0:346,0:-31.4736,-3.0103,0,-31.4736,-3.0103,-31.4736	1/2:62:0,43,19:0:0:43,19:1534,684:-181.22,-56.1708,-43.2265,-125.409,0,-119.689	1/1:15:0,15,0:0:0:15,0:523,0:-47.3992,-4.51545,0,-47.3992,-4.51545,-47.3992	1/2:9:0,6,3:0:0:6,3:206,108:-25.8874,-9.17208,-7.3659,-17.0696,0,-16.1665	1/2:70:0,45,25:0:0:45,25:1573,896:-201.392,-73.4346,-59.8883,-128.313,0,-120.787	1/1:17:0,17,0:0:0:17,0:588,0:-53.2438,-5.11751,0,-53.2438,-5.11751,-53.2438	1/1: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chr08	25119660	.	A	G	9573.85	PASS	AB=0.457371;ABP=20.7832;AC=23;AF=0.125;AN=184;AO=528;CIGAR=1X;DP=5261;DPB=5261;DPRA=1.15202;EPP=572.133;EPPR=140.286;GTI=2;LEN=1;MEANALT=1;MQM=44.7424;MQMR=59.9417;NS=92;NUMALT=1;ODDS=4.33147;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=18686;QR=169351;RO=4733;RPL=78;RPP=572.133;RPPR=140.286;RPR=450;RUN=1;SAF=0;SAP=1149.55;SAR=528;SRF=0;SRP=10280.6;SRR=4733;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:101:101,0:101:3606:0:0:0,-30.404,-324.746	0/0:159:158,1:158:5647:1:36:0,-44.2655,-504.75	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:78:77,1:77:2768:1:32:0,-20.281,-246.161	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2739	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.22	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:50:49,1:49:1747:1:36:0,-11.4532,-153.915	0/0:42:42,0:42:1494:0:0:0,-12.6433,-134.753	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.387	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.897	0/0:22:22,0:22:774:0:0:0,-6.62266,-69.9796	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:89:89,0:89:3147:0:0:0,-26.7917,-283.453	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.923	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:33:24,9:24:845:9:324:-19.1638,0,-66.4331	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:164:89,75:89:3157:75:2641:-186.531,0,-234.928	0/0:103:103,0:103:3679:0:0:0,-31.0061,-331.293	0/1:13:6,7:6:216:7:252:-18.5969,0,-15.8771	0/0:162:162,0:162:5803:0:0:0,-48.7669,-522.378	0/0:144:144,0:144:5133:0:0:0,-43.3483,-462.082	0/1:70:33,37:33:1176:37:1319:-96.3138,0,-85.0757	1/1:3:0,3:0:0:3:108:-9.93584,-0.90309,0	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:4:3,1:3:108:1:36:-2.31689,0,-8.87105	.:.:.:.:.:.:.:.	0/1:16:7,9:7:252:9:320:-23.371,0,-18.2125	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.732	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.886	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:84:49,35:49:1756:35:1243:-84.9381,0,-132.908	0/1:18:13,5:13:464:5:176:-10.4218,0,-36.679	0/0:87:87,0:87:3114:0:0:0,-26.1896,-280.296	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.166	0/1:117:60,57:60:2160:57:2002:-142.59,0,-159.429	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/0:88:87,1:87:3112:1:32:0,-23.3042,-277.121	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.482	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:101:44,57:44:1584:57:2017:-145.841,0,-112.447	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:27:17,10:17:608:10:360:-23.8247,0,-46.9242	0/1:102:47,55:47:1684:55:1964:-143.401,0,-121.142	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5511	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	.:.:.:.:.:.:.:.	0/0:141:141,0:141:5055:0:0:0,-42.4452,-455.094	0/0:94:94,0:94:3367:0:0:0,-28.2968,-303.245	0/1:28:14,14:14:504:14:496:-35.9665,0,-37.2693	0/0:95:94,1:94:3372:1:36:0,-24.9996,-300.097	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:101:100,1:100:3565:1:36:0,-26.9013,-317.554	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.214	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/1:22:14,8:14:500:8:279:-18.6202,0,-38.7135	0/0:94:94,0:94:3371:0:0:0,-28.2968,-303.605	0/1:23:14,9:14:504:9:315:-21.1908,0,-38.7744	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.436	0/0:107:107,0:107:3839:0:0:0,-32.2102,-345.705	0/1:77:38,39:38:1360:39:1383:-98.2371,0,-99.5213	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.423	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:70:67,3:67:2412:3:99:0,-11.9346,-208.198	0/1:69:33,36:33:1165:36:1288:-92.8643,0,-84.3839	0/0:113:112,1:112:3999:1:36:0,-30.4181,-356.502	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3668	0/1:44:30,14:30:1080:14:480:-29.2668,0,-84.267	0/1:54:34,20:34:1211:20:705:-45.6209,0,-93.0399	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/1:45:35,10:35:1251:10:356:-18.4087,0,-98.857	0/1:15:7,8:7:252:8:279:-20.6488,0,-18.5135	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.303	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.977
chr08	25119668	.	TA	TG,TGT	119162	PASS	AB=0.54028,0.458844;ABP=19.1043,19.8116;AC=161,23;AF=0.875,0.125;AN=184;AO=4780,531;CIGAR=1M1X,1M1I1X;DP=5315;DPB=5580.5;DPRA=19.4579,0.923944;EPP=10347.9,1156.06;EPPR=0;GTI=2;LEN=1,3;MEANALT=1.2967,2;MQM=59.9215,44.5913;MQMR=0;NS=92;NUMALT=2;ODDS=4.51694;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=171045,18887;QR=0;RO=0;RPL=4776,531;RPP=10347.9,1156.06;RPPR=0;RPR=4,0;RUN=1,1;SAF=0,0;SAP=10382.6,1156.06;SAR=4780,531;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/1:73:0,73,0:0:0:73,0:2610,0:-235.148,-21.9752,0,-235.148,-21.9752,-235.148	1/1:100:0,100,0:0:0:100,0:3580,0:-322.406,-30.103,0,-322.406,-30.103,-322.406	1/1:161:0,160,0:0:0:160,0:5732,0:-515.743,-48.1648,0,-515.743,-48.1648,-515.743	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/1:50:0,50,0:0:0:50,0:1800,0:-162.282,-15.0515,0,-162.282,-15.0515,-162.282	1/1:65:0,65,0:0:0:65,0:2311,0:-208.25,-19.567,0,-208.25,-19.567,-208.25	1/1:80:0,80,0:0:0:80,0:2860,0:-257.638,-24.0824,0,-257.638,-24.0824,-257.638	1/1:38:0,38,0:0:0:38,0:1349,0:-121.708,-11.4391,0,-121.708,-11.4391,-121.708	1/1:38:0,38,0:0:0:38,0:1359,0:-122.611,-11.4391,0,-122.611,-11.4391,-122.611	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7915,-9.0309,0,-96.7915,-9.0309,-96.7915	1/1:49:0,49,0:0:0:49,0:1752,0:-157.91,-14.7505,0,-157.91,-14.7505,-157.91	1/1:48:0,48,0:0:0:48,0:1720,0:-155.086,-14.4494,0,-155.086,-14.4494,-155.086	1/1:52:0,52,0:0:0:52,0:1868,0:-168.397,-15.6536,0,-168.397,-15.6536,-168.397	1/1:41:0,41,0:0:0:41,0:1470,0:-132.596,-12.3422,0,-132.596,-12.3422,-132.596	1/1:31:0,31,0:0:0:31,0:1107,0:-99.9396,-9.33193,0,-99.9396,-9.33193,-99.9396	1/1:41:0,41,0:0:0:41,0:1472,0:-132.775,-12.3422,0,-132.775,-12.3422,-132.775	1/1:22:0,22,0:0:0:22,0:784,0:-70.8821,-6.62266,0,-70.8821,-6.62266,-70.8821	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/1:107:0,107,0:0:0:107,0:3825,0:-344.445,-32.2102,0,-344.445,-32.2102,-344.445	1/1:88:0,88,0:0:0:88,0:3156,0:-284.251,-26.4906,0,-284.251,-26.4906,-284.251	1/1:67:0,67,0:0:0:67,0:2400,0:-216.252,-20.169,0,-216.252,-20.169,-216.252	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/2:34:0,25,9:0:0:25,9:873,322:-97.23,-26.223,-18.6973,-71.3588,0,-68.6495	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/2:165:0,90,74:0:0:90,74:3199,2609:-471.281,-210.595,-183.503,-260.678,0,-238.402	1/1:103:0,103,0:0:0:103,0:3676,0:-330.994,-31.0061,0,-330.994,-31.0061,-330.994	1/2:13:0,6,7:0:0:6,7:216,252:-38.0314,-20.4031,-18.5969,-17.9843,0,-15.8771	1/1:164:0,164,0:0:0:164,0:5843,0:-525.979,-49.3689,0,-525.979,-49.3689,-525.979	1/1:149:0,149,0:0:0:149,0:5352,0:-481.735,-44.8535,0,-481.735,-44.8535,-481.735	1/2:70:0,32,38:0:0:32,38:1152,1345:-202.315,-108.313,-98.6801,-94.3572,0,-82.918	2/2:3:0,0,3:0:0:0,3:0,108:-9.93584,-9.93584,-9.93584,-0.90309,-0.90309,0	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/2:4:0,3,1:0:0:3,1:104,36:-11.669,-3.21998,-2.31689,-8.79971,0,-8.49868	.:.:.:.:.:.:.:.	1/2:17:0,8,9:0:0:8,9:284,324:-48.9446,-25.801,-23.3927,-23.4951,0,-20.7858	1/1:96:0,96,0:0:0:96,0:3439,0:-309.722,-28.8989,0,-309.722,-28.8989,-309.722	1/1:102:0,102,0:0:0:102,0:3653,0:-328.973,-30.7051,0,-328.973,-30.7051,-328.973	1/1:35:0,35,0:0:0:35,0:1256,0:-113.337,-10.5361,0,-113.337,-10.5361,-113.337	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:84:0,50,34:0:0:50,34:1774,1212:-241.521,-97.0474,-81.9959,-144.825,0,-134.59	1/2:19:0,13,6:0:0:13,6:464,212:-54.9492,-17.1131,-13.1997,-38.1841,0,-36.3779	1/1:85:0,85,0:0:0:85,0:3043,0:-273.909,-25.5876,0,-273.909,-25.5876,-273.909	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/1:31:0,31,0:0:0:31,0:1104,0:-99.6664,-9.33193,0,-99.6664,-9.33193,-99.6664	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/1:71:0,71,0:0:0:71,0:2547,0:-229.477,-21.3731,0,-229.477,-21.3731,-229.477	1/2:118:0,60,58:0:0:60,58:2156,2067:-341.675,-165.831,-147.769,-176.199,0,-158.739	1/1:62:0,62,0:0:0:62,0:2218,0:-199.885,-18.6639,0,-199.885,-18.6639,-199.885	1/1:90:0,89,1:0:0:89,1:3196,34:-287.525,-26.7917,0,-284.785,-23.7139,-284.484	1/1:77:0,77,0:0:0:77,0:2759,0:-248.551,-23.1793,0,-248.551,-23.1793,-248.551	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:101:0,43,58:0:0:43,58:1545,2064:-288.861,-162.815,-149.871,-126.399,0,-108.939	1/1:45:0,45,0:0:0:45,0:1611,0:-145.279,-13.5464,0,-145.279,-13.5464,-145.279	1/2:27:0,17,10:0:0:17,10:612,360:-78.8838,-28.9422,-23.8247,-50.2959,0,-47.2856	1/2:105:0,51,54:0:0:51,54:1836,1927:-304.297,-154.529,-139.177,-150.123,0,-133.868	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:5:0,5,0:0:0:5,0:180,0:-16.5511,-1.50515,0,-16.5511,-1.50515,-16.5511	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1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chr08	25177867	.	A	G	14895.3	PASS	AB=0.686258;ABP=367.02;AC=23;AF=0.123656;AN=186;AO=853;CIGAR=1X;DP=3962;DPB=3962;DPRA=1.67153;EPP=1855.28;EPPR=6751.95;GTI=9;LEN=1;MEANALT=1;MQM=47.5217;MQMR=59.1441;NS=93;NUMALT=1;ODDS=0.335349;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30442;QR=111186;RO=3108;RPL=0;RPP=1855.28;RPPR=6751.95;RPR=853;RUN=1;SAF=853;SAP=1855.28;SAR=0;SRF=3108;SRP=6751.95;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6337	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.109	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.409	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.227	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8797	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.42	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.246	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.174	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.18	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7535	0/0:35:35,0:35:1260:0:0:0,-10.536,-112.897	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.217	0/0:41:41,0:41:1464:0:0:0,-12.3422,-131.84	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.711	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.6759	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.8501	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6843	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:208:208,0:208:7464:0:0:0,-62.6142,-670.86	0/0:101:100,1:100:3573:1:36:0,-26.8175,-317.898	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.412	0/1:40:10,30:10:356:30:1065:-83.4671,0,-20.3211	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.9915	0/1:118:52,66:52:1872:66:2360:-175.332,0,-133.238	0/0:58:58,0:58:2058:0:0:0,-17.4597,-185.325	0/1:35:8,27:8:288:27:972:-76.3648,0,-15.7314	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.752	0/0:35:34,1:34:1224:1:36:0,-6.96262,-106.894	0/1:74:18,56:18:633:56:2004:-156.152,0,-35.0051	1/1:3:0,3:0:0:3:108:-10.0056,-0.90309,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2995	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5437	0/1:11:1,10:1:36:10:360:-29.2554,0,-0.286945	0/0:113:112,0:112:4024:0:0:0,-33.7154,-360.02	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.073	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:123:29,94:29:1036:94:3308:-257.319,0,-56.5059	0/1:41:17,24:17:604:24:860:-64.4569,0,-42.3441	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.819	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5773	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6381	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.244	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.431	0/1:86:31,55:31:1097:55:1964:-149.317,0,-73.0882	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.553	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.383	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.872	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:86:17,69:17:608:69:2468:-195.288,0,-29.1307	0/0:22:22,0:22:792:0:0:0,-6.62266,-70.4583	0/1:5:2,3:2:72:3:108:-8.33697,0,-5.33157	0/1:89:28,61:28:1000:61:2146:-164.409,0,-63.266	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.3066	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.96543	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5381	0/0:37:36,1:36:1292:1:36:0,-7.5713,-112.832	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5381	0/0:76:76,0:76:2709:0:0:0,-22.8783,-243.787	0/0:80:77,3:77:2749:3:108:0,-14.065,-237.537	0/1:41:19,22:19:680:22:788:-57.4227,0,-49.1837	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3108	0/0:79:79,0:79:2800:0:0:0,-23.7814,-252.196	0/0:80:79,1:79:2813:1:36:0,-20.5156,-249.795	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.73	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.374	1/1:13:0,13:0:0:13:468:-42.114,-3.91339,0	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.509	0/1:50:28,22:28:1004:22:784:-54.8635,0,-75.6164	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.637	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.201	0/1:49:11,38:11:396:38:1368:-107.151,0,-21.2184	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.6713	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.61	0/1:114:23,91:23:824:91:3260:-256.202,0,-40.1577	0/0:76:76,0:76:2732:0:0:0,-22.8783,-245.846	0/0:36:36,0:36:1277:0:0:0,-10.8371,-114.185	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4236	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4592	0/0:52:51,1:51:1824:1:36:0,-12.0867,-160.805	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4976	0/1:50:13,37:13:468:37:1324:-103.295,0,-27.3999	0/1:57:21,36:21:756:36:1279:-97.3416,0,-51.1909	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9956	0/1:57:35,22:35:1260:22:792:-52.8367,0,-96.5468	0/1:82:16,66:16:561:66:2368:-186.906,0,-26.1046	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.691	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659
chr08	25177899	.	TACTA	TACTC	62563.2	PASS	AB=0.239816;ABP=897.942;AC=163;AF=0.876344;AN=186;AO=3012;CIGAR=4M1X;DP=4239;DPB=4239.2;DPRA=2.98334;EPP=6534.8;EPPR=2264.37;GTI=16;LEN=1;MEANALT=1.15385;MQM=59.2244;MQMR=51.1123;NS=93;NUMALT=1;ODDS=0.21994;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=0;PRO=0;QA=106537;QR=42100;RO=1211;RPL=3011;RPP=6534.8;RPPR=501.013;RPR=1;RUN=1;SAF=3012;SAP=6543.49;SAR=0;SRF=913;SRP=681.214;SRR=298;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:634:-57.3751,-5.41854,0	1/1:38:0,38:0:0:38:1337:-120.399,-11.4391,0	1/1:47:0,47:0:0:47:1657:-149.398,-14.1484,0	1/1:58:0,58:0:0:58:2080:-187.286,-17.4597,0	1/1:19:0,19:0:0:19:668:-60.4414,-5.71957,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:36:0,35:0:0:35:1256:-113.08,-10.5361,0	1/1:34:0,34:0:0:34:1181:-106.217,-10.235,0	1/1:37:0,37:0:0:37:1332:-120.174,-11.1381,0	1/1:35:1,34:1:31:34:1186:-103.928,-7.44682,0	1/1:20:0,20:0:0:20:716:-64.7535,-6.0206,0	1/1:32:0,31:0:0:31:1104:-99.3899,-9.33193,0	1/1:35:0,35:0:0:35:1244:-112.205,-10.5361,0	1/1:38:0,37:0:0:37:1303:-117.129,-11.1381,0	1/1:29:0,29:0:0:29:1040:-93.8869,-8.72987,0	1/1:24:0,24:0:0:24:846:-76.422,-7.22472,0	1/1:14:0,14:0:0:14:500:-45.2497,-4.21442,0	1/1:13:0,13:0:0:13:456:-41.3594,-3.91339,0	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:206:3,203:3:97:203:7182:-636.743,-52.9612,0	1/1:97:0,97:0:0:97:3416:-307.548,-29.1999,0	1/1:27:0,27:0:0:27:914:-82.5658,-8.12781,0	1/1:34:0,34:0:0:34:1207:-108.888,-10.235,0	0/1:42:32,10:32:1118:10:337:-18.0029,0,-87.7233	1/1:24:0,24:0:0:24:856:-77.2701,-7.22472,0	0/1:213:163,50:163:5658:50:1775:-95.9129,0,-443.704	1/1:59:1,57:1:31:57:2011:-178.021,-14.67,0	0/1:37:29,8:29:1023:8:284:-14.7652,0,-80.4051	1/1:66:0,66:0:0:66:2323:-209.243,-19.868,0	1/1:35:1,34:1:35:34:1220:-106.628,-7.05728,0	0/1:154:136,18:136:4713:18:648:-12.2657,0,-375.969	0/0:5:5,0:5:177:0:0:0,-1.50515,-16.2176	1/1:5:0,5:0:0:5:166:-15.262,-1.50515,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:176:-16.1767,-1.50515,0	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.2554	1/1:106:1,104:1:22:104:3665:-327.216,-29.6273,0	1/1:49:0,49:0:0:49:1732:-156.141,-14.7505,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:128:101,27:101:3533:27:953:-47.5302,0,-275.988	0/1:44:27,17:27:939:17:591:-40.2593,0,-70.7953	1/1:61:0,61:0:0:61:2179:-196.359,-18.3628,0	1/1:21:0,21:0:0:21:743:-67.1788,-6.32163,0	1/1:18:0,18:0:0:18:617:-55.8361,-5.41854,0	1/1:49:0,49:0:0:49:1747:-157.425,-14.7505,0	1/1:35:0,35:0:0:35:1223:-110.348,-10.5361,0	0/1:143:113,30:113:3917:30:1067:-53.2376,0,-308.086	1/1:47:1,46:1:30:46:1632:-144.354,-11.6246,0	1/1:34:0,34:0:0:34:1224:-110.44,-10.235,0	1/1:43:0,42:0:0:42:1508:-135.728,-12.6433,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:88:73,15:73:2568:15:527:-21.2686,0,-203.768	1/1:22:0,22:0:0:22:780:-69.4466,-6.62266,0	0/1:5:3,2:3:101:2:72:-5.33157,0,-7.8263	0/1:91:63,28:63:2188:28:987:-61.4945,0,-166.775	1/1:17:1,15:1:35:15:508:-42.5668,-1.63267,0	1/1:3:0,3:0:0:3:108:-9.96543,-0.90309,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:25:0,25:0:0:25:883:-79.7754,-7.52575,0	1/1:36:1,35:1:36:35:1252:-109.233,-7.27027,0	1/1:5:0,5:0:0:5:172:-15.804,-1.50515,0	1/1:77:1,76:1:32:76:2692:-239.216,-19.98,0	1/1:81:4,77:4:143:77:2721:-231.832,-11.1853,0	0/1:41:23,18:23:795:18:644:-45.9475,0,-59.1256	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:76:0,75:0:0:75:2642:-237.629,-22.5773,0	1/1:76:2,73:2:71:73:2615:-228.856,-16.2153,0	1/1:16:0,16:0:0:16:558:-50.5465,-4.81648,0	1/1:45:0,45:0:0:45:1590:-143.381,-13.5464,0	1/1:31:1,30:1:35:30:1050:-91.3102,-5.8333,0	0/0:26:26,0:26:909:0:0:0,-7.82678,-81.8302	1/1:59:0,56:0:0:56:1988:-178.818,-16.8577,0	0/1:49:23,26:23:784:26:919:-68.2744,0,-55.6569	1/1:42:0,42:0:0:42:1484:-133.826,-12.6433,0	1/1:70:0,70:0:0:70:2491:-224.213,-21.0721,0	0/1:50:39,11:39:1345:11:396:-20.9174,0,-105.327	1/1:26:0,26:0:0:26:894:-80.7676,-7.82678,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:39:0,39:0:0:39:1368:-123.379,-11.7402,0	0/1:120:98,21:98:3403:21:756:-32.2148,0,-268.077	1/1:78:4,74:4:143:74:2624:-223.057,-10.2589,0	1/1:34:1,33:1:28:33:1169:-102.201,-7.43529,0	1/1:27:1,26:1:31:26:932:-81.0856,-5.02836,0	1/1:14:1,13:1:35:13:460:-38.2363,-0.715791,0	1/1:52:1,50:1:35:50:1703:-150.031,-12.2271,0	1/1:7:0,7:0:0:7:248:-22.6559,-2.10721,0	0/1:52:38,13:38:1337:13:464:-26.4305,0,-104.055	0/1:59:38,21:38:1323:21:748:-49.8669,0,-100.757	1/1:22:0,22:0:0:22:768:-69.341,-6.62266,0	0/1:58:24,34:24:832:34:1178:-88.8019,0,-56.5395	0/1:137:121,15:121:4207:15:536:-7.30397,0,-336.112	1/1:34:0,34:0:0:34:1208:-109.012,-10.235,0	1/1:39:0,39:0:0:39:1395:-125.848,-11.7402,0
chr08	25178094	.	G	A	129805	PASS	AB=0.541306;ABP=21.8462;AC=162;AF=0.870968;AN=186;AO=5740;CIGAR=1X;DP=6345;DPB=6345;DPRA=8.69368;EPP=12363.2;EPPR=1308.08;GTI=2;LEN=1;MEANALT=1;MQM=59.9772;MQMR=60;NS=93;NUMALT=1;ODDS=14.9302;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205777;QR=21575;RO=605;RPL=12;RPP=12363.2;RPPR=1308.08;RPR=5728;RUN=1;SAF=5740;SAP=12467.3;SAR=0;SRF=605;SRP=1316.75;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:137:0,137:0:0:137:4913:-442.318,-41.2411,0	1/1:168:0,168:0:0:168:6012:-541.178,-50.573,0	1/1:29:0,29:0:0:29:1025:-92.5616,-8.72987,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:45:0,45:0:0:45:1597:-144.018,-13.5464,0	1/1:79:0,79:0:0:79:2844:-256.197,-23.7814,0	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	1/1:68:0,68:0:0:68:2434:-219.315,-20.47,0	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	1/1:69:0,69:0:0:69:2469:-222.463,-20.7711,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:99:0,99:0:0:99:3560:-320.607,-29.802,0	1/1:82:0,82:0:0:82:2940:-264.833,-24.6845,0	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:140:54,86:54:1910:86:3092:-236.363,0,-130.029	1/1:202:0,202:0:0:202:7207:-648.681,-60.8081,0	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	1/1:190:0,190:0:0:190:6832:-614.94,-57.1957,0	1/1:93:0,93:0:0:93:3340:-300.816,-27.9958,0	0/1:93:32,61:32:1140:61:2171:-167.659,0,-74.9134	0/1:17:12,5:12:413:5:176:-11.0675,0,-32.3803	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	1/1:143:0,143:0:0:143:5144:-463.098,-43.0473,0	1/1:144:0,144:0:0:144:5168:-465.259,-43.3483,0	1/1:32:0,32:0:0:32:1148:-103.56,-9.63296,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:115:55,60:55:1968:60:2147:-158.878,0,-142.777	0/1:30:12,18:12:428:18:648:-49.621,0,-29.8279	1/1:104:0,104:0:0:104:3740:-336.799,-31.3071,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:68:0,68:0:0:68:2438:-219.674,-20.47,0	1/1:74:0,74:0:0:74:2654:-239.104,-22.2762,0	0/1:133:65,68:65:2296:68:2421:-178.108,0,-166.863	1/1:89:0,89:0:0:89:3170:-285.522,-26.7917,0	1/1:114:0,114:0:0:114:4081:-367.474,-34.3174,0	1/1:109:0,109:0:0:109:3905:-351.324,-32.8123,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:89:46,43:46:1648:43:1548:-112.821,0,-121.817	1/1:51:0,51:0:0:51:1836:-165.331,-15.3525,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:102:50,52:50:1775:52:1868:-137.694,0,-129.327	1/1:44:0,44:0:0:44:1573:-141.86,-13.2453,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0	1/1:97:0,97:0:0:97:3488:-314.13,-29.1999,0	.:.:.:.:.:.:.:.	1/1:134:0,134:0:0:134:4794:-431.613,-40.338,0	1/1:113:1,112:1:36:112:4007:-357.219,-30.4181,0	0/1:37:19,18:19:680:18:629:-45.7957,0,-50.3911	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:120:2,118:2:72:118:4234:-374.388,-29.2869,0	1/1:121:0,121:0:0:121:4333:-390.143,-36.4246,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	1/1:180:0,180:0:0:180:6455:-581.035,-54.1854,0	0/1:62:30,32:30:1076:32:1148:-84.966,0,-78.489	1/1:106:0,106:0:0:106:3774:-339.858,-31.9092,0	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	0/1:65:27,38:27:953:38:1364:-103.494,0,-66.5164	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:77:36,41:36:1292:41:1472:-109.597,0,-93.4045	1/1:173:2,171:2:72:171:6135:-545.411,-45.2415,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:51:19,32:19:680:32:1148:-88.2773,0,-46.1766	0/1:53:22,31:22:792:31:1101:-83.4438,0,-55.6511	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:54:18,36:18:644:36:1296:-100.688,0,-42.035	0/1:67:45,22:45:1616:22:788:-51.0758,0,-125.561	1/1:98:1,97:1:36:97:3461:-308.103,-25.9027,0	1/1:73:0,73:0:0:73:2620:-236.034,-21.9752,0
chr08	25191250	.	G	A	89027.5	PASS	AB=0.628882;ABP=95.925;AC=167;AF=0.888298;AN=188;AO=4028;CIGAR=1X;DP=4326;DPB=4326;DPRA=7.74194;EPP=8741.02;EPPR=639.281;GTI=3;LEN=1;MEANALT=1.01075;MQM=45.5181;MQMR=36.1886;NS=94;NUMALT=1;ODDS=2.90124;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144470;QR=10587;RO=297;RPL=4027;RPP=8741.02;RPPR=639.281;RPR=1;RUN=1;SAF=4028;SAP=8749.7;SAR=0;SRF=297;SRP=647.938;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:464:-40.6442,-3.91339,0	1/1:33:0,33:0:0:33:1176:-103.027,-9.93399,0	1/1:53:0,53:0:0:53:1900:-166.723,-15.9546,0	1/1:55:0,55:0:0:55:1963:-174.568,-16.5567,0	1/1:45:0,45:0:0:45:1605:-142.762,-13.5464,0	1/1:17:0,16:0:0:16:572:-48.5506,-4.81648,0	1/1:30:0,30:0:0:30:1080:-96.1587,-9.0309,0	1/1:69:0,69:0:0:69:2464:-216.169,-20.7711,0	1/1:21:0,21:0:0:21:752:-66.5787,-6.32163,0	1/1:51:0,51:0:0:51:1836:-163.211,-15.3525,0	1/1:69:0,69:0:0:69:2476:-220.518,-20.7711,0	1/1:78:0,78:0:0:78:2808:-246.063,-23.4803,0	1/1:71:0,71:0:0:71:2552:-223.11,-21.3731,0	1/1:47:0,47:0:0:47:1686:-149.225,-14.1484,0	1/1:46:0,46:0:0:46:1647:-147.179,-13.8474,0	1/1:48:0,48:0:0:48:1716:-151.907,-14.4494,0	1/1:26:0,26:0:0:26:932:-82.0349,-7.82678,0	1/1:30:0,30:0:0:30:1076:-94.6052,-9.0309,0	1/1:24:0,24:0:0:24:860:-74.5875,-7.22472,0	1/1:51:0,51:0:0:51:1835:-162.848,-15.3525,0	1/1:104:0,104:0:0:104:3740:-329.309,-31.3071,0	1/1:27:0,27:0:0:27:972:-87.0858,-8.12781,0	1/1:53:0,53:0:0:53:1895:-169.414,-15.9546,0	1/1:6:0,6:0:0:6:208:-18.839,-1.80618,0	1/1:25:0,25:0:0:25:900:-80.1964,-7.52575,0	0/1:60:7,53:7:252:53:1900:-151.845,0,-3.07567	1/1:59:0,59:0:0:59:2120:-187.418,-17.7608,0	0/1:20:9,11:9:324:11:392:-29.1284,0,-21.3267	1/1:87:0,87:0:0:87:3128:-279.564,-26.1896,0	1/1:69:2,67:2:72:67:2408:-205.333,-14.4134,0	1/1:34:3,31:3:108:31:1112:-89.8249,-0.721227,0	0/0:45:43,2:43:1527:2:72:0,-6.79457,-121.266	1/1:13:0,13:0:0:13:468:-41.7206,-3.91339,0	0/1:24:21,3:21:752:3:108:-2.6341,0,-52.2605	1/1:27:0,27:0:0:27:964:-83.4402,-8.12781,0	0/1:22:16,6:16:576:6:216:-12.7429,0,-40.2061	1/1:153:0,153:0:0:153:5504:-490.918,-46.0576,0	1/1:39:0,39:0:0:39:1400:-123.37,-11.7402,0	1/1:58:0,58:0:0:58:2088:-182.786,-17.4597,0	1/1:12:0,12:0:0:12:432:-38.2301,-3.61236,0	0/1:64:16,48:16:576:48:1724:-133.135,0,-28.0546	0/1:22:9,13:9:324:13:464:-34.9532,0,-20.8157	1/1:74:0,74:0:0:74:2655:-234.101,-22.2762,0	1/1:59:0,59:0:0:59:2120:-188.711,-17.7608,0	1/1:45:0,45:0:0:45:1620:-144.151,-13.5464,0	1/1:63:1,62:1:36:62:2220:-194.365,-15.4842,0	1/1:63:0,63:0:0:63:2264:-199.674,-18.9649,0	0/1:49:14,35:14:500:35:1252:-96.9317,0,-28.4548	1/1:52:0,52:0:0:52:1868:-166.501,-15.6536,0	1/1:55:0,55:0:0:55:1972:-175.447,-16.5567,0	1/1:33:0,33:0:0:33:1173:-105.311,-9.93399,0	1/1:9:0,9:0:0:9:324:-29.2479,-2.70927,0	0/1:27:10,17:10:360:17:612:-46.0957,0,-21.4122	1/1:34:0,34:0:0:34:1224:-109.594,-10.235,0	0/0:6:6,0:6:207:0:0:0,-1.80618,-17.2948	0/1:33:9,24:9:324:24:845:-65.3975,0,-15.6398	1/1:9:0,9:0:0:9:324:-29.2479,-2.70927,0	1/1:6:0,6:0:0:6:216:-19.6832,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.4623,-1.50515,0	1/1:38:0,38:0:0:38:1360:-120.788,-11.4391,0	1/1:55:0,55:0:0:55:1972:-175.343,-16.5567,0	1/1:2:0,2:0:0:2:72:-6.77694,-0.60206,0	1/1:178:0,178:0:0:178:6379:-569.044,-53.5833,0	1/1:71:0,71:0:0:71:2552:-227.264,-21.3731,0	0/1:19:11,8:11:387:8:284:-18.6654,0,-27.1169	1/1:31:0,31:0:0:31:1116:-99.5177,-9.33193,0	1/1:51:0,51:0:0:51:1832:-163.372,-15.3525,0	1/1:67:0,67:0:0:67:2408:-213.068,-20.169,0	1/1:33:0,33:0:0:33:1188:-105.314,-9.93399,0	1/1:11:0,11:0:0:11:396:-34.6343,-3.31133,0	1/1:44:0,44:0:0:44:1580:-141.094,-13.2453,0	0/1:13:5,8:5:180:8:288:-22.1076,0,-11.8352	1/1:49:0,49:0:0:49:1756:-154.184,-14.7505,0	0/1:44:23,21:23:824:21:752:-52.6233,0,-53.9628	1/1:117:0,117:0:0:117:4176:-367.008,-35.2205,0	1/1:58:0,58:0:0:58:2088:-186.503,-17.4597,0	0/1:44:11,33:11:396:33:1184:-91.3381,0,-19.2163	1/1:41:0,41:0:0:41:1472:-129.284,-12.3422,0	1/1:4:0,4:0:0:4:140:-12.4525,-1.20412,0	1/1:40:0,40:0:0:40:1440:-128.09,-12.0412,0	1/1:27:2,25:2:68:25:896:-72.2397,-2.17149,0	1/1:95:0,95:0:0:95:3393:-300.465,-28.5979,0	1/1:53:0,53:0:0:53:1908:-170.135,-15.9546,0	1/1:51:1,50:1:36:50:1796:-156.58,-11.7543,0	1/1:32:0,32:0:0:32:1148:-101.412,-9.63296,0	1/1:87:0,87:0:0:87:3104:-276.88,-26.1896,0	1/1:18:0,18:0:0:18:639:-55.5901,-5.41854,0	0/1:35:11,24:11:388:24:864:-65.9038,0,-21.521	0/1:30:9,21:9:320:21:756:-57.3681,0,-17.4851	1/1:25:0,25:0:0:25:896:-78.6727,-7.52575,0	0/1:93:42,51:42:1478:51:1832:-133.176,0,-95.1741	0/1:45:16,29:16:572:29:1031:-78.7735,0,-35.2093	1/1:133:0,133:0:0:133:4772:-423.505,-40.037,0	1/1:70:0,70:0:0:70:2516:-224.7,-21.0721,0
chr08	25191916	.	TGAGAA	TGCC,TGGGAA	108785	PASS	AB=0.488471,0.507259;ABP=4.36214,3.54621;AC=162,22;AF=0.880435,0.119565;AN=184;AO=4526,602;CIGAR=1M2D1M2X,2M1X3M;DP=5158;DPB=3640.5;DPRA=11.3253,1.03904;EPP=9831.09,1301.57;EPPR=5.18177;GTI=1;LEN=4,1;MEANALT=1.53846,2.20833;MQM=43.2919,50.8538;MQMR=60;NS=92;NUMALT=2;ODDS=1.11799;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=158746,21507;QR=36;RO=1;RPL=0,1;RPP=9831.09,1301.57;RPPR=5.18177;RPR=4526,601;RUN=1,1;SAF=4526,602;SAP=9831.09,1310.24;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,28,0:0:0:28,0:975,0:-85.378,-8.42884,0,-85.378,-8.42884,-85.378	1/1:56:0,56,0:0:0:56,0:1984,0:-173.156,-16.8577,0,-173.156,-16.8577,-173.156	1/1:113:0,112,0:0:0:112,0:3852,0:-334.961,-33.7154,0,-334.961,-33.7154,-334.961	1/1:48:0,48,0:0:0:48,0:1685,0:-149.988,-14.4494,0,-149.988,-14.4494,-149.988	1/1:40:0,40,0:0:0:40,0:1420,0:-125.897,-12.0412,0,-125.897,-12.0412,-125.897	1/1:9:0,9,0:0:0:9,0:308,0:-27.3796,-2.70927,0,-27.3796,-2.70927,-27.3796	1/1:54:0,54,0:0:0:54,0:1881,0:-167.522,-16.2556,0,-167.522,-16.2556,-167.522	1/1:71:0,70,0:0:0:70,0:2460,0:-214.722,-21.0721,0,-214.722,-21.0721,-214.722	1/1:48:0,48,0:0:0:48,0:1683,0:-147.249,-14.4494,0,-147.249,-14.4494,-147.249	1/1:38:0,38,0:0:0:38,0:1317,0:-117.67,-11.4391,0,-117.67,-11.4391,-117.67	1/1:75:0,75,0:0:0:75,0:2646,0:-234.37,-22.5773,0,-234.37,-22.5773,-234.37	1/1:85:0,85,0:0:0:85,0:2964,0:-258.208,-25.5876,0,-258.208,-25.5876,-258.208	1/1:90:0,90,0:0:0:90,0:3140,0:-273.757,-27.0927,0,-273.757,-27.0927,-273.757	1/1:113:0,113,0:0:0:113,0:3972,0:-349.091,-34.0164,0,-349.091,-34.0164,-349.091	1/1:81:0,81,0:0:0:81,0:2865,0:-253.631,-24.3834,0,-253.631,-24.3834,-253.631	1/1:54:0,54,0:0:0:54,0:1873,0:-165.707,-16.2556,0,-165.707,-16.2556,-165.707	1/1:61:0,61,0:0:0:61,0:2164,0:-189.103,-18.3628,0,-189.103,-18.3628,-189.103	1/1:76:0,76,0:0:0:76,0:2718,0:-237.504,-22.8783,0,-237.504,-22.8783,-237.504	1/1:56:0,56,0:0:0:56,0:1940,0:-169.416,-16.8577,0,-169.416,-16.8577,-169.416	1/1:93:0,93,0:0:0:93,0:3235,0:-287.569,-27.9958,0,-287.569,-27.9958,-287.569	1/1:58:0,58,0:0:0:58,0:2015,0:-178.157,-17.4597,0,-178.157,-17.4597,-178.157	1/1:10:0,10,0:0:0:10,0:347,0:-30.7595,-3.0103,0,-30.7595,-3.0103,-30.7595	1/1:12:0,11,0:0:0:11,0:379,0:-33.7041,-3.31133,0,-33.7041,-3.31133,-33.7041	1/2:63:1,35,27:1:36:35,27:1216,957:-171.499,-74.6235,-67.0251,-94.2275,0,-89.0376	1/1:55:0,54,0:0:0:54,0:1905,0:-168.18,-16.2556,0,-168.18,-16.2556,-168.18	1/2:82:0,48,34:0:0:48,34:1667,1224:-231.85,-100.015,-85.5652,-132.186,0,-121.951	1/1:70:0,69,0:0:0:69,0:2432,0:-213.417,-20.7711,0,-213.417,-20.7711,-213.417	1/2:49:0,23,26:0:0:23,26:786,919:-137.759,-74.9975,-68.0739,-63.1058,0,-55.279	1/1:95:0,93,0:0:0:93,0:3278,0:-285.647,-27.9958,0,-285.647,-27.9958,-285.647	1/1:33:0,32,0:0:0:32,0:1124,0:-99.381,-9.63296,0,-99.381,-9.63296,-99.381	1/2:37:0,16,21:0:0:16,21:545,756:-105.136,-61.9451,-57.1286,-43.5355,0,-37.2139	1/2:4:0,2,2:0:0:2,2:70,72:-11.8136,-6.21747,-5.61541,-5.94795,0,-5.34589	1/1:10:0,10,0:0:0:10,0:352,0:-31.4991,-3.0103,0,-31.4991,-3.0103,-31.4991	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:137,0:-12.3829,-1.20412,0,-12.3829,-1.20412,-12.3829	2/2:5:0,0,5:0:0:0,5:0,165:-15.1006,-15.1006,-15.1006,-1.50515,-1.50515,0	1/1:160:0,159,0:0:0:159,0:5613,0:-488.286,-47.8638,0,-488.286,-47.8638,-488.286	1/1:56:0,54,1:0:0:54,1:1884,36:-165.887,-16.2556,0,-162.958,-13.3237,-162.657	1/1:58:0,58,0:0:0:58,0:2051,0:-179.043,-17.4597,0,-179.043,-17.4597,-179.043	.:.:.:.:.:.:.:.	1/2:81:0,37,44:0:0:37,44:1301,1557:-230.237,-126.604,-115.466,-103.981,0,-90.7354	1/2:48:0,26,21:0:0:26,21:899,752:-133.018,-61.1389,-53.3121,-71.8892,0,-65.5676	1/1:85:0,83,0:0:0:83,0:2864,0:-253.404,-24.9855,0,-253.404,-24.9855,-253.404	1/1:91:0,91,0:0:0:91,0:3222,0:-284.204,-27.3937,0,-284.204,-27.3937,-284.204	1/1:76:0,76,0:0:0:76,0:2678,0:-238.27,-22.8783,0,-238.27,-22.8783,-238.27	1/1:39:0,38,0:0:0:38,0:1347,0:-118.029,-11.4391,0,-118.029,-11.4391,-118.029	1/1:52:0,52,0:0:0:52,0:1811,0:-158.003,-15.6536,0,-158.003,-15.6536,-158.003	1/2:65:0,40,25:0:0:40,25:1408,896:-186.541,-73.3221,-61.2809,-113.573,0,-106.047	1/1:34:0,34,0:0:0:34,0:1184,0:-105.771,-10.235,0,-105.771,-10.235,-105.771	1/1:53:0,53,0:0:0:53,0:1878,0:-167.11,-15.9546,0,-167.11,-15.9546,-167.11	1/1:35:0,35,0:0:0:35,0:1248,0:-108.191,-10.5361,0,-108.191,-10.5361,-108.191	1/1:5:0,5,0:0:0:5,0:180,0:-16.3696,-1.50515,0,-16.3696,-1.50515,-16.3696	1/2:143:0,94,49:0:0:94,49:3300,1752:-400.82,-142.173,-113.876,-258.997,0,-244.246	1/1:14:0,14,0:0:0:14,0:495,0:-43.5853,-4.21442,0,-43.5853,-4.21442,-43.5853	1/2:5:0,4,1:0:0:4,1:141,36:-14.4181,-3.27774,-2.07362,-11.4953,0,-11.1943	1/2:68:0,24,43:0:0:24,43:856,1521:-191.096,-123.447,-116.222,-67.7723,0,-54.828	1/1:15:0,13,0:0:0:13,0:458,0:-40.4738,-3.91339,0,-40.4738,-3.91339,-40.4738	1/1:3:0,3,0:0:0:3,0:91,0:-7.82026,-0.90309,0,-7.82026,-0.90309,-7.82026	1/1:4:0,4,0:0:0:4,0:138,0:-12.4258,-1.20412,0,-12.4258,-1.20412,-12.4258	1/1:17:0,17,0:0:0:17,0:592,0:-52.3511,-5.11751,0,-52.3511,-5.11751,-52.3511	1/1:97:0,96,1:0:0:96,1:3408,36:-302.319,-28.8989,0,-299.386,-25.6067,-299.085	1/1:7:0,7,0:0:0:7,0:246,0:-22.2331,-2.10721,0,-22.2331,-2.10721,-22.2331	1/1:38:0,38,0:0:0:38,0:1343,0:-116.937,-11.4391,0,-116.937,-11.4391,-116.937	1/1:58:0,58,0:0:0:58,0:2026,0:-179.377,-17.4597,0,-179.377,-17.4597,-179.377	1/2:23:0,10,13:0:0:10,13:358,464:-66.1397,-37.9516,-34.9413,-28.5382,0,-24.6248	1/1:43:0,42,0:0:0:42,0:1499,0:-132.906,-12.6433,0,-132.906,-12.6433,-132.906	1/1:55:0,53,1:0:0:53,1:1840,36:-163.146,-15.9546,0,-160.213,-13.0108,-159.912	1/1:21:0,21,0:0:0:21,0:713,0:-63.0757,-6.32163,0,-63.0757,-6.32163,-63.0757	1/1:33:0,33,0:0:0:33,0:1146,0:-100.931,-9.93399,0,-100.931,-9.93399,-100.931	1/1:33:0,33,0:0:0:33,0:1168,0:-102.787,-9.93399,0,-102.787,-9.93399,-102.787	1/1:105:0,105,0:0:0:105,0:3681,0:-320.421,-31.6082,0,-320.421,-31.6082,-320.421	1/2:8:0,4,4:0:0:4,4:130,144:-22.4765,-12.0906,-10.8865,-10.7268,0,-9.52269	1/1:37:0,37,0:0:0:37,0:1308,0:-113.218,-11.1381,0,-113.218,-11.1381,-113.218	1/2:39:0,17,22:0:0:17,22:592,788:-109.798,-63.9528,-58.8353,-46.1873,0,-39.5647	1/1:70:0,70,0:0:0:70,0:2467,0:-217.326,-21.0721,0,-217.326,-21.0721,-217.326	1/1:62:0,62,0:0:0:62,0:2148,0:-191.636,-18.6639,0,-191.636,-18.6639,-191.636	1/2:87:0,41,46:0:0:41,46:1438,1648:-246.168,-133.881,-121.539,-112.633,0,-98.7855	1/1:64:0,63,0:0:0:63,0:2210,0:-193.97,-18.9649,0,-193.97,-18.9649,-193.97	1/1:4:0,4,0:0:0:4,0:144,0:-12.96,-1.20412,0,-12.96,-1.20412,-12.96	1/1:67:0,66,0:0:0:66,0:2314,0:-202.782,-19.868,0,-202.782,-19.868,-202.782	1/2:49:0,17,32:0:0:17,32:575,1152:-139.085,-93.761,-88.6435,-45.6632,0,-36.0302	1/1:79:0,78,0:0:0:78,0:2718,0:-240.73,-23.4803,0,-240.73,-23.4803,-240.73	1/1:115:0,114,0:0:0:114,0:3981,0:-352.638,-34.3174,0,-352.638,-34.3174,-352.638	1/1:76:0,76,0:0:0:76,0:2637,0:-234.965,-22.8783,0,-234.965,-22.8783,-234.965	1/1:83:0,83,0:0:0:83,0:2945,0:-259.981,-24.9855,0,-259.981,-24.9855,-259.981	1/1:113:0,113,0:0:0:113,0:3976,0:-352.464,-34.0164,0,-352.464,-34.0164,-352.464	1/1:49:0,49,0:0:0:49,0:1739,0:-152.042,-14.7505,0,-152.042,-14.7505,-152.042	1/2:80:0,36,43:0:0:36,43:1276,1540:-225.038,-124.681,-113.844,-100.347,0,-87.403	1/2:81:0,36,45:0:0:36,45:1240,1616:-228.009,-130.812,-119.975,-97.5403,0,-83.9939	1/1:73:0,71,0:0:0:71,0:2509,0:-220.915,-21.3731,0,-220.915,-21.3731,-220.915	1/2:106:0,44,61:0:0:44,61:1535,2192:-300.361,-178.297,-165.052,-122.059,0,-103.696	1/2:53:0,18,35:0:0:18,35:628,1248:-152.393,-101.899,-96.4803,-50.843,0,-40.307	1/1:43:0,43,0:0:0:43,0:1492,0:-131.932,-12.9443,0,-131.932,-12.9443,-131.932	1/1:123:0,122,0:0:0:122,0:4342,0:-386.241,-36.7257,0,-386.241,-36.7257,-386.241
chr08	25191936	.	GAC	GAA,AAA	240038	PASS	AB=0.610697,0.38806;ABP=174.157,178.024;AC=165,21;AF=0.887097,0.112903;AN=186;AO=8295,628;CIGAR=2M1X,1X1M1X;DP=8952;DPB=8952.33;DPRA=0,0.852919;EPP=18015.4,1366.69;EPPR=0;GTI=3;LEN=1,3;MEANALT=1.54839,2.12;MQM=41.8882,50.5748;MQMR=0;NS=93;NUMALT=2;ODDS=2.38073;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,32;PQR=0;PRO=0;QA=294319,22247;QR=0;RO=0;RPL=4410,626;RPP=75.1637,1349.38;RPPR=0;RPR=3885,2;RUN=1,1;SAF=4410,626;SAP=75.1637,1349.38;SAR=3885,2;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,42,0:0:0:42,0:1504,0:-131.45,-12.6433,0,-131.45,-12.6433,-131.45	1/1:111:0,111,0:0:0:111,0:3928,0:-341.012,-33.4143,0,-341.012,-33.4143,-341.012	1/1:180:0,180,0:0:0:180,0:6375,0:-550.412,-54.1854,0,-550.412,-54.1854,-550.412	1/1:101:0,101,0:0:0:101,0:3596,0:-314.454,-30.404,0,-314.454,-30.404,-314.454	1/1:74:0,74,0:0:0:74,0:2629,0:-230.332,-22.2762,0,-230.332,-22.2762,-230.332	1/1:16:0,16,0:0:0:16,0:568,0:-49.816,-4.81648,0,-49.816,-4.81648,-49.816	1/1:69:0,69,0:0:0:69,0:2476,0:-218.518,-20.7711,0,-218.518,-20.7711,-218.518	1/1:147:0,147,0:0:0:147,0:5258,0:-454.935,-44.2514,0,-454.935,-44.2514,-454.935	1/1:75:0,75,0:0:0:75,0:2664,0:-231.481,-22.5773,0,-231.481,-22.5773,-231.481	1/1:69:0,69,0:0:0:69,0:2397,0:-210.755,-20.7711,0,-210.755,-20.7711,-210.755	1/1:140:0,140,0:0:0:140,0:4948,0:-432.204,-42.1442,0,-432.204,-42.1442,-432.204	1/1:153:0,151,0:0:0:151,0:5335,0:-462.772,-45.4555,0,-462.772,-45.4555,-462.772	1/1:169:0,168,1:0:0:168,1:5946,36:-515.893,-50.573,0,-513.582,-47.9713,-513.281	1/1:165:0,164,0:0:0:164,0:5815,0:-506.997,-49.3689,0,-506.997,-49.3689,-506.997	1/1:140:0,140,0:0:0:140,0:4992,0:-435.734,-42.1442,0,-435.734,-42.1442,-435.734	1/1:136:0,136,0:0:0:136,0:4764,0:-416.103,-40.9401,0,-416.103,-40.9401,-416.103	1/1:121:0,121,0:0:0:121,0:4292,0:-370.599,-36.4246,0,-370.599,-36.4246,-370.599	1/1:138:0,138,0:0:0:138,0:4903,0:-425.783,-41.5421,0,-425.783,-41.5421,-425.783	1/1:90:0,89,0:0:0:89,0:3166,0:-273.003,-26.7917,0,-273.003,-26.7917,-273.003	1/1:190:0,190,0:0:0:190,0:6759,0:-591.396,-57.1957,0,-591.396,-57.1957,-591.396	1/1:128:0,127,0:0:0:127,0:4530,0:-392.64,-38.2308,0,-392.64,-38.2308,-392.64	1/1:27:0,27,0:0:0:27,0:953,0:-81.5797,-8.12781,0,-81.5797,-8.12781,-81.5797	1/1:27:0,27,0:0:0:27,0:957,0:-83.3424,-8.12781,0,-83.3424,-8.12781,-83.3424	1/2:91:0,63,28:0:0:63,28:2238,1001:-258.313,-81.578,-62.6131,-177.087,0,-168.658	1/1:82:0,81,0:0:0:81,0:2797,0:-245.611,-24.3834,0,-245.611,-24.3834,-245.611	1/2:122:0,86,36:0:0:86,36:2976,1265:-336.852,-103.097,-77.2079,-234.101,0,-223.264	1/1:131:0,131,0:0:0:131,0:4657,0:-404.487,-39.4349,0,-404.487,-39.4349,-404.487	1/2:74:0,49,25:0:0:49,25:1725,879:-207.911,-71.3854,-56.6349,-136.552,0,-129.027	1/1:160:0,158,0:0:0:158,0:5601,0:-486.2,-47.5627,0,-486.2,-47.5627,-486.2	1/1:55:0,55,0:0:0:55,0:1959,0:-169.186,-16.5567,0,-169.186,-16.5567,-169.186	1/2:51:0,30,21:0:0:30,21:1052,752:-143.896,-61.5877,-52.5568,-82.6574,0,-76.3357	1/2:5:0,3,2:0:0:3,2:108,72:-14.7836,-6.21747,-5.31438,-8.92186,0,-8.3198	1/1:19:0,19,0:0:0:19,0:657,0:-57.6162,-5.71957,0,-57.6162,-5.71957,-57.6162	.:.:.:.:.:.:.:.	1/1:10:0,10,0:0:0:10,0:356,0:-31.4291,-3.0103,0,-31.4291,-3.0103,-31.4291	1/2:8:0,3,5:0:0:3,5:108,180:-23.3582,-14.9386,-14.0355,-8.76948,0,-7.26433	1/1:331:0,330,0:0:0:330,0:11702,0:-1014.21,-99.3399,0,-1014.21,-99.3399,-1014.21	1/1:90:0,89,1:0:0:89,1:3168,36:-276.337,-26.7917,0,-273.407,-23.5035,-273.106	1/1:133:0,132,0:0:0:132,0:4662,0:-402.611,-39.736,0,-402.611,-39.736,-402.611	1/1:2:0,2,0:0:0:2,0:72,0:-6.56353,-0.60206,0,-6.56353,-0.60206,-6.56353	1/2:112:0,65,47:0:0:65,47:2332,1639:-315.971,-132.384,-112.817,-183.933,0,-169.785	1/2:75:0,53,22:0:0:53,22:1848,787:-209.041,-64.1375,-48.1829,-145.253,0,-138.631	1/1:127:0,127,0:0:0:127,0:4529,0:-395.875,-38.2308,0,-395.875,-38.2308,-395.875	1/1:179:0,177,0:0:0:177,0:6236,0:-545.421,-53.2823,0,-545.421,-53.2823,-545.421	1/1:160:0,160,0:0:0:160,0:5699,0:-497.528,-48.1648,0,-497.528,-48.1648,-497.528	1/1:72:0,72,0:0:0:72,0:2524,0:-219.43,-21.6742,0,-219.43,-21.6742,-219.43	1/1:96:0,96,0:0:0:96,0:3392,0:-294.389,-28.8989,0,-294.389,-28.8989,-294.389	1/2:99:0,73,26:0:0:73,26:2604,921:-281.464,-75.0829,-53.1077,-206.732,0,-198.906	1/1:63:0,63,0:0:0:63,0:2247,0:-196.97,-18.9649,0,-196.97,-18.9649,-196.97	1/1:95:0,95,0:0:0:95,0:3387,0:-296.905,-28.5979,0,-296.905,-28.5979,-296.905	1/1:84:0,84,0:0:0:84,0:2981,0:-257.068,-25.2865,0,-257.068,-25.2865,-257.068	1/1:12:0,12,0:0:0:12,0:423,0:-37.4174,-3.61236,0,-37.4174,-3.61236,-37.4174	1/2:159:0,106,53:0:0:106,53:3761,1863:-443.88,-150.917,-119.008,-293.31,0,-277.355	1/1:28:0,28,0:0:0:28,0:995,0:-86.8591,-8.42884,0,-86.8591,-8.42884,-86.8591	1/2:6:0,5,1:0:0:5,1:180,36:-17.44,-3.27774,-1.77259,-14.5186,0,-14.2175	1/2:82:0,38,43:0:0:38,43:1364,1529:-231.19,-123.99,-112.551,-107.334,0,-94.3901	1/1:28:0,28,0:0:0:28,0:1008,0:-88.7875,-8.42884,0,-88.7875,-8.42884,-88.7875	1/1:4:0,4,0:0:0:4,0:143,0:-11.6311,-1.20412,0,-11.6311,-1.20412,-11.6311	1/1:11:0,11,0:0:0:11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chr08	25191956	.	G	A	8625.19	PASS	AB=0.377846;ABP=213.622;AC=21;AF=0.112903;AN=186;AO=617;CIGAR=1X;DP=9077;DPB=9077;DPRA=0.808327;EPP=1342.81;EPPR=60.1934;GTI=4;LEN=1;MEANALT=1;MQM=50.7066;MQMR=41.8186;NS=93;NUMALT=1;ODDS=0.13432;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22089;QR=301336;RO=8460;RPL=617;RPP=1342.81;RPPR=18338.9;RPR=0;RUN=1;SAF=617;SAP=1342.81;SAR=0;SRF=4462;SRP=58.2714;SRR=3998;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1523:0:0:0,-12.9443,-132.896	0/0:113:113,0:113:4051:0:0:0,-34.0164,-350.754	0/0:182:182,0:182:6476:0:0:0,-54.7875,-559.296	0/0:103:103,0:103:3688:0:0:0,-31.0061,-322.071	0/0:75:75,0:75:2671:0:0:0,-22.5772,-234.078	0/0:16:16,0:16:572:0:0:0,-4.81648,-50.1511	0/0:73:73,0:73:2606:0:0:0,-21.9752,-229.573	0/0:149:149,0:149:5336:0:0:0,-44.8535,-461.768	0/0:75:75,0:75:2651:0:0:0,-22.5772,-231.053	0/0:71:71,0:71:2539:0:0:0,-21.3731,-223.09	0/0:139:139,0:139:4962:0:0:0,-41.8432,-432.193	0/0:154:154,0:154:5483:0:0:0,-46.3586,-473.58	0/0:174:174,0:174:6159:0:0:0,-52.3792,-533.379	0/0:166:166,0:166:5896:0:0:0,-49.971,-514.381	0/0:141:141,0:141:5038:0:0:0,-42.4452,-439.738	0/0:136:136,0:136:4836:0:0:0,-40.9401,-421.991	0/0:124:124,0:124:4436:0:0:0,-37.3277,-383.33	0/0:143:143,0:143:5066:0:0:0,-43.0473,-439.172	0/0:92:92,0:92:3270:0:0:0,-27.6948,-281.152	0/0:193:193,0:193:6899:0:0:0,-58.0988,-602.702	0/0:124:124,0:124:4389:0:0:0,-37.3277,-380.099	0/0:28:28,0:28:1000:0:0:0,-8.42884,-85.568	0/0:29:29,0:29:1032:0:0:0,-8.72987,-88.8173	0/1:93:65,28:65:2320:28:1008:-62.6282,0,-174.998	0/0:81:81,0:81:2900:0:0:0,-24.3834,-254.619	0/1:122:87,35:87:3081:35:1260:-76.7601,0,-232.238	0/0:134:134,0:134:4766:0:0:0,-40.338,-414.142	0/1:76:51,25:51:1776:25:896:-57.8731,0,-132.967	0/0:163:163,0:163:5815:0:0:0,-49.0679,-504.619	0/0:53:53,0:53:1904:0:0:0,-15.9546,-164.302	0/1:51:30,21:30:1076:21:756:-52.9142,0,-77.9025	0/1:5:3,2:3:108:2:72:-5.31438,0,-8.3198	0/0:19:19,0:19:663:0:0:0,-5.71957,-58.3035	.:.:.:.:.:.:.:.	0/0:10:10,0:10:351:0:0:0,-3.0103,-30.9995	0/1:7:3,4:3:108:4:144:-11.1342,0,-7.56536	0/0:334:334,0:334:11924:0:0:0,-100.544,-1031.93	0/0:92:91,1:91:3227:1:36:0,-24.1055,-278.389	0/0:136:136,0:136:4852:0:0:0,-40.9401,-417.751	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.2611	0/1:115:69,46:69:2459:46:1634:-111.884,0,-180.01	0/1:73:53,20:53:1884:20:720:-42.7681,0,-141.679	0/0:137:137,0:137:4864:0:0:0,-41.2411,-424.996	0/0:174:174,0:174:6201:0:0:0,-52.3792,-541.96	0/0:164:164,0:164:5855:0:0:0,-49.3689,-510.146	0/0:73:73,0:73:2608:0:0:0,-21.9752,-226.424	0/0:97:97,0:97:3467:0:0:0,-29.1999,-300.823	0/1:100:75,25:75:2667:25:900:-51.1027,0,-203.438	0/0:63:63,0:63:2238:0:0:0,-18.9649,-196.219	0/0:97:97,0:97:3476:0:0:0,-29.1999,-303.836	0/0:85:85,0:85:3035:0:0:0,-25.5875,-261.763	0/0:12:12,0:12:428:0:0:0,-3.61236,-37.8096	0/1:166:114,52:114:4079:52:1852:-115.958,0,-302.69	0/0:29:29,0:29:1036:0:0:0,-8.72987,-90.3581	0/1:6:5,1:5:176:1:36:-1.77259,0,-13.9247	0/1:82:38,44:38:1336:44:1567:-115.965,0,-92.0682	0/0:26:26,0:26:900:0:0:0,-7.82678,-79.5143	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.6514	0/0:11:11,0:11:396:0:0:0,-3.31133,-33.9157	0/0:31:31,0:31:1097:0:0:0,-9.33193,-95.8873	0/0:187:186,1:186:6634:1:36:0,-52.6994,-575.915	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.1706	0/0:83:83,0:83:2957:0:0:0,-24.9855,-255.197	0/0:119:119,0:119:4248:0:0:0,-35.8226,-370.996	0/1:38:24,14:24:860:14:504:-34.0015,0,-62.7792	0/0:67:67,0:67:2365:0:0:0,-20.169,-208.803	0/0:88:87,1:87:3099:1:36:0,-22.8975,-268.318	0/0:46:46,0:46:1644:0:0:0,-13.8474,-143.821	0/0:70:70,0:70:2489:0:0:0,-21.0721,-215.937	0/0:46:46,0:46:1627:0:0:0,-13.8474,-141.852	0/0:188:188,0:188:6677:0:0:0,-56.5936,-578.394	0/1:9:5,4:5:180:4:144:-10.5855,0,-13.4688	0/0:53:53,0:53:1863:0:0:0,-15.9546,-161.241	0/1:52:29,23:29:1015:23:824:-58.1429,0,-72.3749	0/0:109:109,0:109:3875:0:0:0,-32.8123,-338.448	0/0:133:133,0:133:4731:0:0:0,-40.037,-414.979	0/1:104:57,47:57:2023:47:1680:-119.293,0,-142.997	0/0:108:108,0:108:3856:0:0:0,-32.5112,-335.718	0/0:8:8,0:8:279:0:0:0,-2.40824,-24.6859	0/0:118:118,0:118:4216:0:0:0,-35.5215,-367.363	0/1:72:38,34:38:1347:34:1224:-88.1616,0,-94.7155	0/0:165:165,0:165:5887:0:0:0,-49.6699,-511.606	0/0:207:207,0:207:7395:0:0:0,-62.3132,-645.929	0/0:139:139,0:139:4931:0:0:0,-41.8432,-433.179	0/0:180:180,0:180:6421:0:0:0,-54.1854,-560.241	0/0:232:232,0:232:8319:0:0:0,-69.839,-724.378	0/0:88:88,0:88:3114:0:0:0,-26.4906,-270.073	0/1:119:73,46:73:2600:46:1647:-111.551,0,-189.459	0/1:116:71,45:71:2524:45:1589:-107.06,0,-184.603	0/0:110:110,0:110:3906:0:0:0,-33.1133,-341.633	0/1:129:70,59:70:2487:59:2120:-151.72,0,-177.088	0/1:90:51,39:51:1807:39:1404:-99.1953,0,-130.417	0/0:87:87,0:87:3096:0:0:0,-26.1896,-270.507	0/0:239:239,0:239:8568:0:0:0,-71.9462,-749.369
chr08	25278788	.	CTTT	GTTT,ATTT	173419	PASS	AB=0.529521,0.464885;ABP=15.1902,20.2431;AC=166,22;AF=0.882979,0.117021;AN=188;AO=6392,755;CIGAR=1X3M,1X3M;DP=7183;DPB=7183;DPRA=0,1.02727;EPP=10444.5,1112.16;EPPR=7.35324;GTI=1;LEN=1,1;MEANALT=1.61702,2.33333;MQM=58.8628,58.6702;MQMR=60;NS=94;NUMALT=2;ODDS=2.35771;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=226726,26690;QR=49;RO=2;RPL=424,67;RPP=10444.5,1112.16;RPPR=7.35324;RPR=5968,688;RUN=1,1;SAF=6392,755;SAP=13883.1,1642.47;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:81:0,80,0:0:0:80,0:2826,0:-254.148,-24.0824,0,-254.148,-24.0824,-254.148	1/1:95:0,95,0:0:0:95,0:3412,0:-307.104,-28.5979,0,-307.104,-28.5979,-307.104	1/1:86:0,83,1:0:0:83,1:2923,36:-262.9,-24.9855,0,-259.962,-22.0103,-259.661	1/1:133:0,132,0:0:0:132,0:4649,0:-417.51,-39.736,0,-417.51,-39.736,-417.51	1/1:59:0,59,0:0:0:59,0:2097,0:-188.986,-17.7608,0,-188.986,-17.7608,-188.986	1/1:63:0,63,0:0:0:63,0:2229,0:-200.787,-18.9649,0,-200.787,-18.9649,-200.787	1/1:90:0,89,0:0:0:89,0:3181,0:-285.961,-26.7917,0,-285.961,-26.7917,-285.961	1/1:128:0,128,0:0:0:128,0:4540,0:-408.51,-38.5318,0,-408.51,-38.5318,-408.51	1/1:68:0,68,0:0:0:68,0:2420,0:-217.977,-20.47,0,-217.977,-20.47,-217.977	1/1:91:0,90,0:0:0:90,0:3185,0:-286.485,-27.0927,0,-286.485,-27.0927,-286.485	1/1:60:0,59,0:0:0:59,0:2088,0:-187.743,-17.7608,0,-187.743,-17.7608,-187.743	1/1:52:0,52,0:0:0:52,0:1813,0:-162.86,-15.6536,0,-162.86,-15.6536,-162.86	1/1:62:0,62,0:0:0:62,0:2198,0:-197.71,-18.6639,0,-197.71,-18.6639,-197.71	1/1:85:0,84,1:0:0:84,1:2986,36:-268.539,-25.2865,0,-265.601,-21.9893,-265.3	1/1:66:0,66,0:0:0:66,0:2342,0:-210.492,-19.868,0,-210.492,-19.868,-210.492	1/1:41:0,41,0:0:0:41,0:1457,0:-131.383,-12.3422,0,-131.383,-12.3422,-131.383	1/1:108:0,108,0:0:0:108,0:3849,0:-346.312,-32.5112,0,-346.312,-32.5112,-346.312	1/1:64:0,64,0:0:0:64,0:2270,0:-203.154,-19.2659,0,-203.154,-19.2659,-203.154	1/1:52:0,52,0:0:0:52,0:1848,0:-166.515,-15.6536,0,-166.515,-15.6536,-166.515	1/1:62:0,61,0:0:0:61,0:2157,0:-193.971,-18.3628,0,-193.971,-18.3628,-193.971	1/1:84:0,84,0:0:0:84,0:2987,0:-268.569,-25.2865,0,-268.569,-25.2865,-268.569	1/1:70:0,70,0:0:0:70,0:2468,0:-221.793,-21.0721,0,-221.793,-21.0721,-221.793	1/1:81:0,81,0:0:0:81,0:2855,0:-256.834,-24.3834,0,-256.834,-24.3834,-256.834	1/2:133:0,79,54:0:0:79,54:2820,1928:-387.319,-157.485,-133.704,-230.19,0,-213.935	1/1:45:0,44,0:0:0:44,0:1534,0:-137.689,-13.2453,0,-137.689,-13.2453,-137.689	1/2:230:0,116,114:0:0:116,114:4117,4039:-663.843,-328.622,-293.703,-335.575,0,-301.258	1/1:154:0,153,0:0:0:153,0:5448,0:-489.562,-46.0576,0,-489.562,-46.0576,-489.562	1/2:37:0,18,18:0:0:18,18:648,629:-103.939,-51.1674,-45.7488,-52.7794,0,-47.3609	1/1:132:0,130,0:0:0:130,0:4579,0:-411.221,-39.1339,0,-411.221,-39.1339,-411.221	1/1:105:0,102,3:0:0:102,3:3611,108:-324.285,-30.7051,0,-315.663,-21.7296,-314.76	1/2:114:0,62,51:0:0:62,51:2183,1817:-324.672,-147.428,-128.764,-177.238,0,-161.885	1/2:21:0,10,11:0:0:10,11:360,384:-60.7931,-31.449,-28.4387,-29.6979,0,-26.3866	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:9:0,8,1:0:0:8,1:273,36:-25.4314,-3.29724,-0.889005,-22.4919,0,-22.1909	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:9:0,5,4:0:0:5,4:171,129:-24.6118,-10.7235,-9.21839,-14.2192,0,-13.0151	1/1:163:0,162,0:0:0:162,0:5728,0:-514.33,-48.7669,0,-514.33,-48.7669,-514.33	1/1:118:0,118,0:0:0:118,0:4220,0:-379.846,-35.5215,0,-379.846,-35.5215,-379.846	1/1:77:0,76,0:0:0:76,0:2694,0:-242.128,-22.8783,0,-242.128,-22.8783,-242.128	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:123:0,61,62:0:0:61,62:2180,2190:-356.318,-178.643,-160.28,-178.03,0,-159.366	1/2:42:0,25,17:0:0:25,17:888,593:-120.719,-48.3561,-40.8303,-72.7133,0,-67.5958	1/1:60:1,58,0:1:24:58,0:2062,0:-183.139,-15.6057,0,-183.44,-17.4597,-185.297	1/1:51:0,50,0:0:0:50,0:1785,0:-160.257,-15.0515,0,-160.257,-15.0515,-160.257	1/1:55:0,55,0:0:0:55,0:1934,0:-174.083,-16.5567,0,-174.083,-16.5567,-174.083	1/1:101:0,101,0:0:0:101,0:3590,0:-323.017,-30.404,0,-323.017,-30.404,-323.017	1/1:98:0,98,0:0:0:98,0:3463,0:-311.34,-29.5009,0,-311.34,-29.5009,-311.34	1/2:149:0,90,58:0:0:90,58:3155,2054:-423.627,-167.279,-140.187,-256.381,0,-238.921	1/1:85:0,84,0:0:0:84,0:3008,0:-270.682,-25.2865,0,-270.682,-25.2865,-270.682	1/1:114:0,113,0:0:0:113,0:4029,0:-362.305,-34.0164,0,-362.305,-34.0164,-362.305	1/1:117:1,115,1:1:25:115,1:4091,36:-365.694,-32.7245,0,-363.057,-31.6261,-364.704	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.0469,0,-14.4449	1/2:100:0,51,48:0:0:51,48:1810,1728:-288.483,-141.046,-125.694,-147.541,0,-133.092	1/1:33:0,33,0:0:0:33,0:1188,0:-107.192,-9.93399,0,-107.192,-9.93399,-107.192	1/2:17:0,11,6:0:0:11,6:381,216:-48.8924,-17.9664,-14.6551,-31.2807,0,-29.4745	1/2:106:0,53,52:0:0:53,52:1892,1830:-303.12,-149.003,-133.048,-154.257,0,-138.604	1/1:38:0,38,0:0:0:38,0:1352,0:-121.852,-11.4391,0,-121.852,-11.4391,-121.852	1/1:15:0,15,0:0:0:15,0:536,0:-48.57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chr08	25398114	.	CCA	ACG,CCG	127681	PASS	AB=0.578249,0.418214;ABP=63.1607,68.7209;AC=163,23;AF=0.876344,0.123656;AN=186;AO=5902,488;CIGAR=1X1M1X,2M1X;DP=6412;DPB=6413.33;DPRA=20.1099,1.04089;EPP=12819,1062.69;EPPR=0;GTI=3;LEN=3,1;MEANALT=1.52747,2.17241;MQM=37.4919,41.8852;MQMR=0;NS=93;NUMALT=2;ODDS=2.14497;PAIRED=0,0;PAIREDR=0;PAO=2,1;PQA=68,0;PQR=0;PRO=1;QA=206978,17492;QR=0;RO=0;RPL=5902,488;RPP=12819,1062.69;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12819,1062.69;SAR=5902,488;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:442,0:-36.5941,-3.91339,0,-36.5941,-3.91339,-36.5941	1/1:61:0,60,0:0:0:60,0:2105,0:-168.444,-18.0618,0,-168.444,-18.0618,-168.444	1/1:103:0,103,0:0:0:103,0:3629,0:-296.123,-31.0061,0,-296.123,-31.0061,-296.123	1/1:107:0,107,0:0:0:107,0:3771,0:-323.122,-32.2102,0,-323.122,-32.2102,-323.122	1/1:15:0,15,0:0:0:15,0:526,0:-44.5729,-4.51545,0,-44.5729,-4.51545,-44.5729	1/1:24:0,24,0:0:0:24,0:850,0:-69.1656,-7.22472,0,-69.1656,-7.22472,-69.1656	1/1:99:0,98,0:0:0:98,0:3416,0:-292.936,-29.5009,0,-292.936,-29.5009,-292.936	1/1:89:0,89,0:0:0:89,0:3115,0:-254.965,-26.7917,0,-254.965,-26.7917,-254.965	1/1:29:0,29,0:0:0:29,0:1027,0:-83.2388,-8.72987,0,-83.2388,-8.72987,-83.2388	1/1:67:0,66,0:0:0:66,0:2315,0:-197.021,-19.868,0,-197.021,-19.868,-197.021	1/1:45:0,45,0:0:0:45,0:1586,0:-132.734,-13.5464,0,-132.734,-13.5464,-132.734	1/1:74:0,74,0:0:0:74,0:2588,0:-209.338,-22.2762,0,-209.338,-22.2762,-209.338	1/1:62:0,62,0:0:0:62,0:2182,0:-177.981,-18.6639,0,-177.981,-18.6639,-177.981	1/1:111:0,110,0:0:0:110,0:3891,0:-323.181,-33.1133,0,-323.181,-33.1133,-323.181	1/1:60:0,60,0:0:0:60,0:2123,0:-180.127,-18.0618,0,-180.127,-18.0618,-180.127	1/1:52:0,50,0:0:0:50,0:1786,0:-149.706,-15.0515,0,-149.706,-15.0515,-149.706	1/1:113:0,113,0:0:0:113,0:3948,0:-319.737,-34.0164,0,-319.737,-34.0164,-319.737	1/1:65:0,64,0:0:0:64,0:2256,0:-183.687,-19.2659,0,-183.687,-19.2659,-183.687	1/1:36:0,36,0:0:0:36,0:1245,0:-101.872,-10.8371,0,-101.872,-10.8371,-101.872	1/1:95:0,95,0:0:0:95,0:3330,0:-282.633,-28.5979,0,-282.633,-28.5979,-282.633	1/1:57:0,57,0:0:0:57,0:1994,0:-165.632,-17.1587,0,-165.632,-17.1587,-165.632	1/1:115:0,115,0:0:0:115,0:4039,0:-350.721,-34.6185,0,-350.721,-34.6185,-350.721	1/1:57:0,57,0:0:0:57,0:2001,0:-169.76,-17.1587,0,-169.76,-17.1587,-169.76	1/2:50:0,33,17:0:0:33,17:1157,608:-135.484,-48.4687,-38.5347,-87.3563,0,-82.2388	1/1:51:0,51,0:0:0:51,0:1792,0:-149.954,-15.3525,0,-149.954,-15.3525,-149.954	1/2:197:0,103,93:0:0:103,93:3636,3344:-550.201,-266.007,-235.001,-284.184,0,-256.188	1/1:126:0,125,0:0:0:125,0:4405,0:-369.236,-37.6288,0,-369.236,-37.6288,-369.236	1/2:29:0,16,13:0:0:16,13:548,468:-78.7583,-37.4185,-32.602,-41.6768,0,-37.7634	1/1:125:0,125,0:0:0:125,0:4361,0:-377.871,-37.6288,0,-377.871,-37.6288,-377.871	1/1:126:0,124,2:0:0:124,2:4347,72:-359.146,-37.3277,0,-353.443,-31.2747,-352.841	1/2:118:0,98,20:0:0:98,20:3451,712:-321.663,-57.3268,-27.8258,-264.683,0,-258.663	2/2:3:0,0,3:0:0:0,3:0,108:-9.80756,-9.80756,-9.80756,-0.90309,-0.90309,0	1/1:16:0,16,0:0:0:16,0:570,0:-48.186,-4.81648,0,-48.186,-4.81648,-48.186	1/2:2:0,1,1:0:0:1,1:36,36:-5.76356,-3.15346,-2.85243,-2.94513,0,-2.6441	1/1:7:0,7,0:0:0:7,0:252,0:-20.7754,-2.10721,0,-20.7754,-2.10721,-20.7754	2/2:4:0,0,3:0:0:0,3:0,104:-8.36824,-8.36824,-8.36824,-0.90309,-0.90309,0	1/1:210:0,209,0:0:0:209,0:7299,0:-633.109,-62.9153,0,-633.109,-62.9153,-633.109	1/1:178:0,177,1:0:0:177,1:6179,36:-515.465,-53.2823,0,-512.613,-50.0806,-512.312	1/1:88:0,88,0:0:0:88,0:3111,0:-252.041,-26.4906,0,-252.041,-26.4906,-252.041	.:.:.:.:.:.:.:.	1/2:82:0,57,24:0:0:57,24:1982,856:-216.811,-67.2842,-50.1255,-149.531,0,-142.306	1/2:34:0,12,22:0:0:12,22:424,792:-94.6032,-62.5384,-58.926,-32.4012,0,-25.7786	1/1:70:0,70,0:0:0:70,0:2457,0:-205.649,-21.0721,0,-205.649,-21.0721,-205.649	1/1:62:0,62,0:0:0:62,0:2187,0:-185.255,-18.6639,0,-185.255,-18.6639,-185.255	1/1:54:0,54,0:0:0:54,0:1889,0:-162.623,-16.2556,0,-162.623,-16.2556,-162.623	1/1:69:0,69,0:0:0:69,0:2397,0:-205.673,-20.7711,0,-205.673,-20.7711,-205.673	1/1:80:0,80,0:0:0:80,0:2772,0:-225.647,-24.0824,0,-225.647,-24.0824,-225.647	1/2:68:0,36,32:0:0:36,32:1247,1148:-188.105,-91.7795,-80.9424,-96.6674,0,-87.0344	1/1:87:0,86,1:0:0:86,1:3018,36:-257.097,-25.8886,0,-254.216,-22.6535,-253.915	1/1:108:0,107,1:0:0:107,1:3736,36:-319.838,-32.2102,0,-316.956,-28.9751,-316.655	1/1:102:0,102,0:0:0:102,0:3571,0:-309.532,-30.7051,0,-309.532,-30.7051,-309.532	1/2:16:0,8,8:0:0:8,8:280,288:-44.3196,-22.966,-20.5578,-21.6924,0,-19.2842	1/2:62:0,43,19:0:0:43,19:1497,680:-162.997,-53.4095,-40.4652,-109.923,0,-104.204	1/1:41:0,41,0:0:0:41,0:1456,0:-125.516,-12.3422,0,-125.516,-12.3422,-125.516	1/2:12:0,6,6:0:0:6,6:216,216:-32.9062,-17.1935,-15.3873,-16.0477,0,-14.2415	1/2:57:0,30,27:0:0:30,27:1063,972:-156.426,-76.1032,-67.0723,-80.6612,0,-72.5334	1/1:21:0,21,0:0:0:21,0:744,0:-63.2046,-6.32163,0,-63.2046,-6.32163,-63.2046	1/1:6:0,6,0:0:0:6,0:216,0:-19.1438,-1.80618,0,-19.1438,-1.80618,-19.1438	1/1:25:0,24,0:0:0:24,0:844,0:-73.0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chr08	25562125	.	A	G	8257.63	PASS	AB=0.475296;ABP=8.37461;AC=21;AF=0.11413;AN=184;AO=494;CIGAR=1X;DP=4753;DPB=4753;DPRA=1.18704;EPP=990.617;EPPR=8786.05;GTI=2;LEN=1;MEANALT=1;MQM=59.9008;MQMR=59.9697;NS=92;NUMALT=1;ODDS=0.566473;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=17645;QR=152529;RO=4258;RPL=10;RPP=990.617;RPPR=8786.05;RPR=484;RUN=1;SAF=494;SAP=1075.72;SAR=0;SRF=4258;SRP=9249.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.762	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:111:111,0:111:3950:0:0:0,-33.4143,-355.69	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.106	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:115:115,0:115:4097:0:0:0,-34.6184,-368.916	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:89:42,47:42:1504:47:1688:-125.415,0,-108.86	0/0:40:40,0:40:1409:0:0:0,-12.0412,-127.105	0/1:172:98,74:98:3513:74:2637:-185.798,0,-264.6	0/0:102:102,0:102:3633:0:0:0,-30.7051,-327.175	0/1:20:8,12:8:284:12:432:-33.2006,0,-19.8828	0/0:154:154,0:154:5508:0:0:0,-46.3586,-495.847	0/0:100:99,1:99:3556:1:36:0,-26.5047,-316.649	0/1:65:32,33:32:1148:33:1172:-86.0883,0,-84.0629	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.4122	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.267	0/0:125:125,0:125:4469:0:0:0,-37.6287,-402.379	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	.:.:.:.:.:.:.:.	0/1:80:51,29:51:1828:29:1035:-69.3807,0,-140.701	0/1:15:4,11:4:140:11:388:-30.7419,0,-8.42913	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:138:78,60:78:2804:60:2152:-152.405,0,-211.057	0/0:70:69,1:69:2480:1:36:0,-17.4738,-219.855	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:96:96,0:96:3437:0:0:0,-28.8989,-309.541	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:95:50,45:50:1796:45:1610:-116.592,0,-133.324	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:51:20,31:20:720:31:1104:-84.3181,0,-49.7762	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.151	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:56:55,1:55:1961:1:36:0,-13.2594,-173.165	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:112:112,0:112:4028:0:0:0,-33.7154,-362.707	0/0:129:126,3:126:4493:3:108:0,-28.7601,-394.461	0/1:57:33,24:33:1176:24:860:-60.5631,0,-88.9891	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.078	0/0:87:85,2:85:3056:2:72:0,-19.3529,-268.427	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:21:15,6:15:540:6:216:-13.4689,0,-42.6149	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.465	0/1:33:17,16:17:589:16:576:-42.241,0,-43.3993	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.72	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:68:67,0:67:2408:0:0:0,-20.169,-216.656	0/1:59:27,32:27:949:32:1133:-84.5159,0,-67.962	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:34:19,15:19:684:15:529:-37.7056,0,-51.6553	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:36:19,17:19:680:17:612:-44.5764,0,-50.6921	0/1:31:9,22:9:320:22:785:-61.6277,0,-19.8104	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659
chr08	25645383	.	G	A	3986.34	PASS	AB=0.304653;ABP=380.54;AC=17;AF=0.0904255;AN=188;AO=353;CIGAR=1X;DP=8211;DPB=8211;DPRA=0.936083;EPP=760.879;EPPR=16973.2;GTI=4;LEN=1;MEANALT=1;MQM=59.9547;MQMR=59.9945;NS=94;NUMALT=1;ODDS=1.32037;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=12584;QR=279908;RO=7851;RPL=0;RPP=769.54;RPPR=17051.2;RPR=353;RUN=1;SAF=352;SAP=760.879;SAR=1;SRF=7842;SRP=16973.2;SRR=9;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:178:178,0:178:6339:0:0:0,-53.5833,-570.6	0/0:121:121,0:121:4317:0:0:0,-36.4246,-388.706	0/0:237:237,0:237:8490:0:0:0,-71.3441,-764.096	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/0:44:44,0:44:1539:0:0:0,-13.2453,-138.796	0/0:109:108,0:108:3835:0:0:0,-32.5112,-344.984	0/0:119:119,0:119:4242:0:0:0,-35.8226,-381.957	0/0:109:109,0:109:3882:0:0:0,-32.8123,-349.572	0/0:113:113,0:113:4033:0:0:0,-34.0164,-363.157	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.738	0/0:65:65,0:65:2325:0:0:0,-19.5669,-209.508	0/0:173:173,0:173:6144:0:0:0,-52.0782,-553.001	0/0:170:170,0:170:6029:0:0:0,-51.1751,-542.712	0/0:84:83,0:83:2984:0:0:0,-24.9855,-268.432	0/0:99:99,0:99:3506:0:0:0,-29.802,-315.75	0/1:80:69,11:69:2469:11:396:-11.9004,0,-198.38	0/0:107:107,0:107:3791:0:0:0,-32.2102,-341.386	0/1:169:127,42:127:4526:42:1504:-84.7805,0,-356.632	0/0:119:118,1:118:4225:1:21:0,-33.7226,-378.328	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/0:214:213,1:213:7579:1:36:0,-60.8221,-678.551	0/0:129:129,0:129:4613:0:0:0,-38.8329,-415.332	0/1:107:77,30:77:2757:30:1076:-64.9426,0,-216.16	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2579	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:191:191,0:191:6758:0:0:0,-57.4967,-608.293	0/0:196:196,0:196:6968:0:0:0,-59.0019,-627.184	0/0:91:91,0:91:3249:0:0:0,-27.3937,-292.63	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:74:57,17:57:2044:17:600:-32.0524,0,-161.956	0/1:28:19,9:19:684:9:324:-21.077,0,-53.4615	0/0:98:98,0:98:3494:0:0:0,-29.5009,-314.668	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/0:126:126,0:126:4456:0:0:0,-37.9298,-401.209	0/0:133:133,0:133:4746:0:0:0,-40.037,-427.296	0/1:158:110,48:110:3936:48:1713:-106.835,0,-306.87	0/0:134:133,0:133:4708:0:0:0,-40.037,-423.518	0/0:169:169,0:169:6068:0:0:0,-50.8741,-546.22	0/0:126:126,0:126:4502:0:0:0,-37.9298,-405.345	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:78:57,21:57:2021:21:752:-44.5259,0,-158.681	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:87:69,18:69:2468:18:621:-30.0216,0,-196.185	0/0:103:103,0:103:3681:0:0:0,-31.0061,-331.492	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5283	0/0:93:92,0:92:3308:0:0:0,-27.6948,-297.578	0/0:99:98,0:98:3486:0:0:0,-29.5009,-313.589	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:241:241,0:241:8618:0:0:0,-72.5482,-775.613	0/0:159:158,1:158:5608:1:36:0,-44.2655,-501.242	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/0:89:88,0:88:3141:0:0:0,-26.4906,-282.555	0/0:349:349,0:349:12395:0:0:0,-105.059,-1115.39	0/0:162:162,0:162:5764:0:0:0,-48.7669,-518.872	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:73:72,0:72:2565:0:0:0,-21.6742,-230.739	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.274	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:71:71,0:71:2507:0:0:0,-21.3731,-225.878	0/1:55:33,22:33:1173:22:788:-54.6881,0,-89.3189	0/0:162:162,0:162:5786:0:0:0,-48.7669,-520.852	0/0:131:131,0:131:4651:0:0:0,-39.4349,-418.751	0/0:55:55,0:55:1934:0:0:0,-16.5566,-174.333	0/0:89:89,0:89:3150:0:0:0,-26.7917,-283.724	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:111:108,3:108:3865:3:108:0,-23.3392,-337.968	0/1:67:40,27:40:1440:27:964:-66.9078,0,-109.729	0/0:212:212,0:212:7575:0:0:0,-63.8184,-681.785	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.114	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:115:115,0:115:4087:0:0:0,-34.6184,-368.013	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:63:35,28:35:1260:28:1004:-71.711,0,-94.7406	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:53:32,21:32:1140:21:737:-50.696,0,-86.9546	0/1:64:28,36:28:1000:36:1292:-97.3178,0,-71.0495	0/0:62:62,0:62:2187:0:0:0,-18.6639,-197.091	0/0:92:92,0:92:3251:0:0:0,-27.6948,-292.809
chr08	25730058	.	G	A	173096	PASS	AB=0.485976;ABP=6.17732;AC=167;AF=0.888298;AN=188;AO=7804;CIGAR=1X;DP=8773;DPB=8773;DPRA=0;EPP=16940.5;EPPR=2100.65;GTI=0;LEN=1;MEANALT=1.03191;MQM=51.0691;MQMR=59.5435;NS=94;NUMALT=1;ODDS=6.84721;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=278920;QR=34459;RO=966;RPL=0;RPP=16949.2;RPPR=2100.65;RPR=7804;RUN=1;SAF=7803;SAP=16940.5;SAR=1;SRF=966;SRP=2100.65;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:752:-67.8273,-6.32163,0	1/1:155:0,154:0:0:154:5529:-494.494,-46.3586,0	1/1:142:0,142:0:0:142:5061:-454.399,-42.7463,0	1/1:252:0,252:0:0:252:9000:-803.124,-75.8596,0	1/1:54:2,52:2:72:52:1848:-158.756,-9.4189,0	1/1:57:0,57:0:0:57:2032:-181.952,-17.1587,0	1/1:153:0,153:0:0:153:5429:-485.104,-46.0576,0	1/1:134:0,134:0:0:134:4796:-428.707,-40.338,0	1/1:89:0,89:0:0:89:3196:-285.971,-26.7917,0	1/1:104:0,104:0:0:104:3716:-333.299,-31.3071,0	1/1:84:1,83:1:36:83:2968:-261.127,-21.6882,0	1/1:72:0,72:0:0:72:2584:-231.785,-21.6742,0	1/1:62:1,61:1:36:61:2192:-192.841,-15.0656,0	1/1:122:0,122:0:0:122:4372:-392.732,-36.7257,0	1/1:46:0,46:0:0:46:1644:-147.154,-13.8474,0	1/1:56:0,56:0:0:56:2008:-180.656,-16.8577,0	1/1:76:0,76:0:0:76:2724:-244.589,-22.8783,0	1/1:47:0,47:0:0:47:1676:-150.313,-14.1484,0	1/1:49:0,49:0:0:49:1756:-157.788,-14.7505,0	1/1:124:0,124:0:0:124:4436:-397.321,-37.3277,0	1/1:114:0,114:0:0:114:4084:-366.822,-34.3174,0	1/1:61:0,61:0:0:61:2192:-195.883,-18.3628,0	1/1:114:0,114:0:0:114:4086:-365.687,-34.3174,0	0/1:134:62,72:62:2220:72:2576:-191.032,0,-159.614	1/1:55:0,55:0:0:55:1976:-177.653,-16.5567,0	0/1:278:135,141:135:4829:141:5017:-365.677,0,-351.338	1/1:120:0,120:0:0:120:4240:-380.923,-36.1236,0	0/1:33:6,27:6:216:27:972:-77.2831,0,-9.85652	1/1:191:0,191:0:0:191:6808:-609.546,-57.4967,0	1/1:176:0,176:0:0:176:6282:-564.235,-52.9813,0	0/1:208:106,102:106:3793:102:3648:-264.371,0,-278.875	0/1:14:12,2:12:432:2:72:-2.59386,0,-35.0068	1/1:5:0,5:0:0:5:180:-16.401,-1.50515,0	0/1:8:4,4:4:144:4:140:-10.5079,0,-10.9054	1/1:13:0,13:0:0:13:449:-40.455,-3.91339,0	0/1:19:11,8:11:392:8:284:-20.1227,0,-29.9005	1/1:162:0,162:0:0:162:5769:-515.703,-48.7669,0	1/1:171:1,170:1:36:170:6092:-542.528,-47.8779,0	1/1:92:0,92:0:0:92:3287:-293.85,-27.6948,0	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:158:74,84:74:2618:84:3016:-223.524,0,-188.296	0/1:40:21,19:21:737:19:676:-48.9221,0,-54.6094	1/1:101:0,101:0:0:101:3593:-322.885,-30.404,0	1/1:66:0,66:0:0:66:2372:-212.636,-19.868,0	1/1:65:0,65:0:0:65:2336:-208.688,-19.567,0	1/1:120:0,120:0:0:120:4288:-383.5,-36.1236,0	1/1:113:0,113:0:0:113:4034:-361.412,-34.0164,0	0/1:210:113,97:113:4018:97:3465:-246.668,0,-298.452	1/1:105:0,105:0:0:105:3764:-336.291,-31.6082,0	1/1:135:0,135:0:0:135:4805:-429.096,-40.6391,0	1/1:135:0,135:0:0:135:4816:-430.622,-40.6391,0	0/1:15:7,8:7:252:8:280:-20.9293,0,-18.5135	0/1:58:24,34:24:830:34:1220:-92.0101,0,-57.5526	1/1:47:0,47:0:0:47:1672:-150.166,-14.1484,0	0/1:32:22,10:22:792:10:356:-22.6709,0,-61.774	0/1:105:55,50:55:1976:50:1781:-128.564,0,-146.474	1/1:30:0,30:0:0:30:1076:-95.76,-9.0309,0	1/1:9:0,9:0:0:9:320:-29.0258,-2.70927,0	1/1:34:0,34:0:0:34:1216:-109.038,-10.235,0	1/1:116:0,116:0:0:116:4149:-372.873,-34.9195,0	1/1:155:0,155:0:0:155:5560:-497.37,-46.6597,0	1/1:7:0,7:0:0:7:252:-22.9454,-2.10721,0	1/1:186:0,186:0:0:186:6633:-593.737,-55.9916,0	1/1:182:3,179:3:108:179:6416:-562.953,-44.7123,0	0/1:114:64,50:64:2254:50:1796:-127.088,0,-168.794	1/1:62:0,62:0:0:62:2185:-195.202,-18.6639,0	1/1:143:0,143:0:0:143:5128:-457.863,-43.0473,0	1/1:75:0,75:0:0:75:2696:-240.886,-22.5773,0	1/1:39:0,39:0:0:39:1389:-124.86,-11.7402,0	1/1:54:0,54:0:0:54:1928:-173.272,-16.2556,0	1/1:83:0,83:0:0:83:2964:-265.42,-24.9855,0	0/1:26:16,10:16:572:10:356:-24.4242,0,-43.9866	1/1:95:0,95:0:0:95:3384:-302.987,-28.5979,0	0/1:64:35,29:35:1256:29:1040:-72.6345,0,-94.063	1/1:292:0,292:0:0:292:10453:-937.636,-87.9008,0	1/1:109:0,109:0:0:109:3908:-349.711,-32.8123,0	1/1:131:0,131:0:0:131:4685:-420.14,-39.4349,0	1/1:103:1,102:1:36:102:3616:-320.3,-27.4078,0	1/1:10:0,10:0:0:10:348:-31.582,-3.0103,0	1/1:93:0,93:0:0:93:3322:-298.059,-27.9958,0	0/1:76:32,44:32:1140:44:1584:-119.334,0,-80.0195	1/1:164:2,162:2:72:162:5777:-509.591,-42.5322,0	1/1:90:2,88:2:72:88:3144:-274.119,-20.256,0	1/1:68:1,67:1:36:67:2396:-210.233,-16.8718,0	1/1:72:0,72:0:0:72:2577:-231.015,-21.6742,0	1/1:113:1,112:1:36:112:4020:-356.393,-30.4181,0	1/1:43:0,43:0:0:43:1525:-136.844,-12.9443,0	0/1:83:44,39:44:1572:39:1391:-99.836,0,-116.786	1/1:75:0,75:0:0:75:2684:-240.825,-22.5773,0	1/1:73:0,73:0:0:73:2611:-234.665,-21.9752,0	0/1:123:70,53:70:2516:53:1908:-134.589,0,-189.638	0/1:56:38,18:38:1360:18:644:-40.6658,0,-105.788	1/1:72:0,72:0:0:72:2584:-231.267,-21.6742,0	1/1:79:0,79:0:0:79:2836:-254.171,-23.7814,0
chr08	25732941	.	C	T	274546	PASS	AB=0.612745;ABP=205.724;AC=168;AF=0.893617;AN=188;AO=9852;CIGAR=1X;DP=10601;DPB=10601;DPRA=0;EPP=21361.6;EPPR=1625.1;GTI=2;LEN=1;MEANALT=1.02128;MQM=53.3067;MQMR=58.9946;NS=94;NUMALT=1;ODDS=0.146769;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=350975;QR=26443;RO=747;RPL=5963;RPP=951.096;RPPR=118.127;RPR=3889;RUN=1;SAF=5961;SAP=947.442;SAR=3891;SRF=473;SRP=118.127;SRR=274;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:1,47:1:36:47:1675:-147.251,-10.9284,0	1/1:118:4,114:4:144:114:4046:-346.978,-22.4938,0	1/1:155:0,155:0:0:155:5533:-496.641,-46.6597,0	1/1:300:1,299:1:36:299:10663:-951.169,-86.7107,0	1/1:62:2,60:2:72:60:2128:-184.303,-11.9739,0	0/1:37:4,33:4:140:33:1188:-95.1554,0,-1.562	1/1:111:0,111:0:0:111:3964:-352.175,-33.4143,0	1/1:161:0,161:0:0:161:5714:-510.299,-48.4658,0	1/1:118:0,118:0:0:118:4179:-374.281,-35.5215,0	1/1:99:1,98:1:36:98:3499:-307.895,-26.2037,0	1/1:47:0,47:0:0:47:1672:-148.985,-14.1484,0	1/1:129:0,128:0:0:128:4550:-406.971,-38.5318,0	1/1:109:1,108:1:36:108:3865:-341.646,-29.2913,0	1/1:88:0,88:0:0:88:3128:-277.278,-26.4906,0	1/1:104:0,104:0:0:104:3724:-331.176,-31.3071,0	1/1:103:0,103:0:0:103:3663:-325.584,-31.0061,0	1/1:84:0,84:0:0:84:3011:-268.292,-25.2865,0	1/1:87:0,87:0:0:87:3103:-275.796,-26.1896,0	1/1:42:0,42:0:0:42:1492:-133.596,-12.6433,0	1/1:261:0,261:0:0:261:9281:-831.385,-78.5688,0	1/1:237:1,236:1:36:236:8404:-747.389,-67.7458,0	1/1:61:4,57:4:144:57:2036:-169.026,-5.27918,0	1/1:121:0,121:0:0:121:4280:-382.343,-36.4246,0	0/1:99:48,51:48:1707:51:1828:-133.444,0,-123.695	1/1:107:0,106:0:0:106:3749:-334.381,-31.9092,0	0/1:254:79,175:79:2774:175:6248:-480.999,0,-173.383	1/1:299:0,299:0:0:299:10623:-947.993,-90.008,0	0/1:67:32,35:32:1122:35:1243:-90.6334,0,-80.9315	1/1:268:0,268:0:0:268:9565:-857.79,-80.676,0	1/1:107:0,107:0:0:107:3836:-340.87,-32.2102,0	0/1:92:17,75:17:600:75:2669:-211.057,0,-26.6344	0/1:3:2,1:2:63:1:36:-2.69518,0,-5.08006	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0172,-0.90309,0	0/1:11:4,7:4:140:7:239:-18.5314,0,-9.63325	1/1:262:1,261:1:36:261:9311:-826.976,-75.3337,0	1/1:98:0,98:0:0:98:3500:-308.673,-29.5009,0	1/1:70:1,69:1:36:69:2476:-216.901,-17.5511,0	1/1:6:0,6:0:0:6:201:-18.3462,-1.80618,0	0/1:169:45,124:45:1607:124:4440:-346.072,0,-94.0453	0/1:49:34,15:34:1212:15:540:-33.2869,0,-94.6359	1/1:123:2,121:2:72:121:4282:-378.056,-30.3368,0	1/1:136:1,135:1:36:135:4817:-425.092,-38.0373,0	1/1:93:1,92:1:36:92:3271:-287.168,-24.4001,0	1/1:93:1,92:1:36:92:3292:-291.867,-24.3975,0	1/1:119:0,119:0:0:119:4241:-379.914,-35.8226,0	0/1:93:39,54:39:1379:54:1918:-143.616,0,-96.4118	1/1:121:0,121:0:0:121:4316:-383.418,-36.4246,0	1/1:144:0,144:0:0:144:5130:-457.293,-43.3483,0	1/1:134:0,134:0:0:134:4780:-429.218,-40.338,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:167:46,121:46:1629:121:4328:-335.367,0,-96.6248	1/1:62:0,62:0:0:62:2202:-197.479,-18.6639,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:181:76,105:76:2689:105:3739:-279.594,0,-187.768	1/1:62:0,62:0:0:62:2201:-195.191,-18.6639,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:16:0,16:0:0:16:553:-49.8549,-4.81648,0	1/1:78:0,78:0:0:78:2761:-246.121,-23.4803,0	1/1:105:1,104:1:36:104:3724:-328.259,-28.1055,0	1/1:10:0,10:0:0:10:360:-32.4823,-3.0103,0	1/1:184:0,184:0:0:184:6485:-579.437,-55.3895,0	1/1:132:0,132:0:0:132:4721:-418.616,-39.736,0	0/1:88:26,62:26:923:62:2208:-170.443,0,-56.8961	1/1:98:0,98:0:0:98:3476:-309.481,-29.5009,0	1/1:214:2,212:2:72:212:7544:-666.734,-57.6745,0	1/1:226:2,224:2:72:224:7970:-706.528,-61.1961,0	1/1:45:1,44:1:36:44:1572:-136.494,-10.0253,0	1/1:96:0,96:0:0:96:3421:-306.404,-28.8989,0	1/1:138:5,133:5:180:133:4736:-405.364,-25.327,0	0/1:18:13,5:13:468:5:180:-10.4943,0,-37.0411	1/1:68:0,68:0:0:68:2433:-218.441,-20.47,0	0/1:114:50,64:50:1780:64:2277:-170.354,0,-126.165	1/1:204:0,204:0:0:204:7255:-646.544,-61.4101,0	1/1:214:0,214:0:0:214:7642:-680.777,-64.4204,0	1/1:103:1,102:1:36:102:3647:-323.202,-27.4851,0	1/1:183:0,183:0:0:183:6517:-581.167,-55.0885,0	1/1:9:0,9:0:0:9:324:-29.4492,-2.70927,0	1/1:194:0,194:0:0:194:6906:-615.404,-58.3998,0	0/1:98:33,65:33:1158:65:2323:-177.856,0,-75.0241	1/1:279:0,279:0:0:279:9940:-887.734,-83.9874,0	1/1:111:1,110:1:36:110:3940:-345.5,-29.9116,0	1/1:117:0,117:0:0:117:4156:-369.26,-35.2205,0	1/1:113:0,113:0:0:113:4045:-358.03,-34.0164,0	1/1:218:1,217:1:36:217:7744:-683.837,-62.1035,0	1/1:55:0,55:0:0:55:1954:-174.26,-16.5567,0	0/1:91:49,42:49:1731:42:1485:-105.099,0,-128.68	1/1:114:0,114:0:0:114:4076:-363.031,-34.3174,0	1/1:38:0,38:0:0:38:1327:-117.864,-11.4391,0	0/1:102:48,54:48:1674:54:1932:-140.933,0,-120.208	0/1:94:62,32:62:2207:32:1135:-71.9266,0,-170.598	1/1:215:0,215:0:0:215:7646:-684.137,-64.7215,0	1/1:195:0,195:0:0:195:6994:-621.821,-58.7009,0
chr08	25744362	.	CTA	CTT,TTT	101195	PASS	AB=0.519956,0.476718;ABP=6.13029,7.25695;AC=166,22;AF=0.882979,0.117021;AN=188;AO=4214,431;CIGAR=2M1X,1X1M1X;DP=4663;DPB=4663.67;DPRA=50.129,0.935752;EPP=9153.6,938.915;EPPR=9.52472;GTI=2;LEN=1,3;MEANALT=1.35484,2.09524;MQM=45.1369,37.1763;MQMR=52.6667;NS=94;NUMALT=2;ODDS=0.44094;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=18,18;PQR=0;PRO=0;QA=150967,15173;QR=78;RO=3;RPL=0,0;RPP=9153.6,938.915;RPPR=9.52472;RPR=4214,431;RUN=1,1;SAF=4214,431;SAP=9153.6,938.915;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,42,0:0:0:42,0:1512,0:-132.997,-12.6433,0,-132.997,-12.6433,-132.997	1/1:39:0,38,0:0:0:38,0:1365,0:-120.078,-11.4391,0,-120.078,-11.4391,-120.078	1/1:104:0,104,0:0:0:104,0:3736,0:-326.888,-31.3071,0,-326.888,-31.3071,-326.888	1/1:142:0,142,0:0:0:142,0:5088,0:-452.246,-42.7463,0,-452.246,-42.7463,-452.246	1/1:49:0,49,0:0:0:49,0:1752,0:-155.759,-14.7505,0,-155.759,-14.7505,-155.759	1/1:22:0,22,0:0:0:22,0:788,0:-69.1885,-6.62266,0,-69.1885,-6.62266,-69.1885	1/1:33:0,33,0:0:0:33,0:1176,0:-105.214,-9.93399,0,-105.214,-9.93399,-105.214	1/1:69:1,67,0:1:28:67,0:2384,0:-207.162,-17.9969,0,-207.463,-20.169,-209.669	1/1:60:0,60,0:0:0:60,0:2148,0:-186.973,-18.0618,0,-186.973,-18.0618,-186.973	1/1:58:0,58,0:0:0:58,0:2076,0:-184.654,-17.4597,0,-184.654,-17.4597,-184.654	1/1:37:0,37,0:0:0:37,0:1328,0:-118.38,-11.1381,0,-118.38,-11.1381,-118.38	1/1:79:0,79,0:0:0:79,0:2832,0:-246.208,-23.7814,0,-246.208,-23.7814,-246.208	1/1:54:0,54,0:0:0:54,0:1935,0:-169.596,-16.2556,0,-169.596,-16.2556,-169.596	1/1:49:0,49,0:0:0:49,0:1755,0:-155.882,-14.7505,0,-155.882,-14.7505,-155.882	1/1:45:0,45,0:0:0:45,0:1611,0:-143.606,-13.5464,0,-143.606,-13.5464,-143.606	1/1:46:0,46,0:0:0:46,0:1652,0:-146.88,-13.8474,0,-146.88,-13.8474,-146.88	1/1:29:0,29,0:0:0:29,0:1044,0:-91.1918,-8.72987,0,-91.1918,-8.72987,-91.1918	1/1:15:0,15,0:0:0:15,0:540,0:-47.8857,-4.51545,0,-47.8857,-4.51545,-47.8857	1/1:19:0,19,0:0:0:19,0:684,0:-60.5862,-5.71957,0,-60.5862,-5.71957,-60.5862	1/1:11:0,11,0:0:0:11,0:396,0:-35.4796,-3.31133,0,-35.4796,-3.31133,-35.4796	1/1:82:0,82,0:0:0:82,0:2936,0:-256.421,-24.6845,0,-256.421,-24.6845,-256.421	1/1:23:0,23,0:0:0:23,0:824,0:-73.3038,-6.92369,0,-73.3038,-6.92369,-73.3038	1/1:70:0,70,0:0:0:70,0:2496,0:-222.615,-21.0721,0,-222.615,-21.0721,-222.615	1/2:46:0,36,10:0:0:36,10:1288,348:-128.469,-25.9676,-15.1306,-102.827,0,-99.8162	1/1:32:1,31,0:1:29:31,0:1112,0:-96.1,-6.7333,0,-96.401,-9.33193,-98.7077	1/2:133:0,72,61:0:0:72,61:2588,2164:-376.857,-168.057,-146.382,-209.148,0,-190.785	1/1:79:0,79,0:0:0:79,0:2832,0:-249.849,-23.7814,0,-249.849,-23.7814,-249.849	1/2:26:0,10,16:0:0:10,16:360,561:-71.6832,-42.7465,-39.7362,-29.2812,0,-24.4647	1/1:87:0,86,1:0:0:86,1:3084,34:-274.937,-25.8886,0,-272.25,-22.8686,-271.949	1/1:67:0,67,0:0:0:67,0:2412,0:-211.266,-20.169,0,-211.266,-20.169,-211.266	1/2:66:0,31,35:0:0:31,35:1112,1231:-182.448,-93.883,-84.5511,-88.9065,0,-78.3705	1/2:5:0,2,3:0:0:2,3:72,106:-14.1468,-8.35176,-7.7497,-6.14012,0,-5.23703	1/1:3:0,3,0:0:0:3,0:108,0:-9.93584,-0.90309,0,-9.93584,-0.90309,-9.93584	1/2:4:0,3,1:0:0:3,1:108,36:-10.4968,-1.78555,-0.882465,-8.95573,0,-8.6547	1/1:1:0,1,0:0:0:1,0:36,0:-2.7362,-0.30103,0,-2.7362,-0.30103,-2.7362	1/2:10:0,4,5:0:0:4,5:136,173:-23.5862,-12.7417,-11.5376,-10.8856,0,-9.38041	1/1:157:0,157,0:0:0:157,0:5630,0:-501.436,-47.2617,0,-501.436,-47.2617,-501.436	1/1:70:0,70,0:0:0:70,0:2492,0:-218.885,-21.0721,0,-218.885,-21.0721,-218.885	1/1:24:0,24,0:0:0:24,0:856,0:-74.611,-7.22472,0,-74.611,-7.22472,-74.611	2/2:1:0,0,0:0:0:0,0:0,0:0,0,0,0,0,0	1/2:45:0,29,16:0:0:29,16:1036,557:-124.136,-42.4271,-33.6972,-82.042,0,-77.2255	1/2:19:0,11,8:0:0:11,8:392,286:-52.866,-21.8156,-18.5043,-31.3886,0,-28.9804	1/1:112:0,112,0:0:0:112,0:4024,0:-355.588,-33.7154,0,-355.588,-33.7154,-355.588	1/1:48:0,48,0:0:0:48,0:1716,0:-152.68,-14.4494,0,-152.68,-14.4494,-152.68	1/1:43:0,43,0:0:0:43,0:1544,0:-137.529,-12.9443,0,-137.529,-12.9443,-137.529	1/1:62:0,61,0:0:0:61,0:2177,0:-194.575,-18.3628,0,-194.575,-18.3628,-194.575	1/1:52:0,52,0:0:0:52,0:1864,0:-163.666,-15.6536,0,-163.666,-15.6536,-163.666	1/2:89:0,41,48:0:0:41,48:1468,1717:-249.369,-131.457,-119.115,-118.257,0,-103.808	1/1:29:0,29,0:0:0:29,0:1036,0:-91.6788,-8.72987,0,-91.6788,-8.72987,-91.6788	1/1:93:0,93,0:0:0:93,0:3336,0:-295.262,-27.9958,0,-295.262,-27.9958,-295.262	1/1:32:0,32,0:0:0:32,0:1140,0:-101.583,-9.63296,0,-101.583,-9.63296,-101.583	1/1:6:0,6,0:0:0:6,0:216,0:-19.6175,-1.80618,0,-19.6175,-1.80618,-19.6175	1/2:57:0,29,28:0:0:29,28:1040,978:-154.454,-72.0047,-63.2748,-82.7824,0,-74.3535	1/1:27:0,27,0:0:0:27,0:968,0:-86.6196,-8.12781,0,-86.6196,-8.12781,-86.6196	1/2:7:0,5,2:0:0:5,2:180,72:-19.3594,-5.56564,-4.06049,-14.1227,0,-13.5206	1/2:64:0,42,22:0:0:42,22:1504,758:-178.149,-57.375,-44.7317,-121.106,0,-114.484	1/1:29:0,29,0:0:0:29,0:1044,0:-92.1218,-8.72987,0,-92.1218,-8.72987,-92.1218	1/1:2:0,2,0:0:0:2,0:72,0:-6.79966,-0.60206,0,-6.79966,-0.60206,-6.79966	1/1:3:0,3,0:0:0:3,0:108,0:-10.0094,-0.9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chr08	25744979	.	T	C	2188.29	PASS	AB=0.296196;ABP=268.544;AC=17;AF=0.0923913;AN=184;AO=220;CIGAR=1X;DP=5957;DPB=5957;DPRA=0.705366;EPP=480.734;EPPR=12443.4;GTI=6;LEN=1;MEANALT=1;MQM=60;MQMR=59.9754;NS=92;NUMALT=1;ODDS=3.9398;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=7846;QR=205545;RO=5737;RPL=0;RPP=480.734;RPPR=12382.7;RPR=220;RUN=1;SAF=0;SAP=480.734;SAR=220;SRF=9;SRP=12382.7;SRR=5728;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2331:0:0:0,-19.5669,-210.049	0/0:140:140,0:140:5015:0:0:0,-42.1442,-451.426	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.773	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/0:86:85,1:85:3048:1:36:0,-22.2903,-270.951	0/0:56:56,0:56:1974:0:0:0,-16.8577,-177.931	0/0:230:230,0:230:8228:0:0:0,-69.2369,-740.529	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:57:57,0:57:2030:0:0:0,-17.1587,-182.971	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.664	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/1:140:117,23:117:4180:23:828:-32.6999,0,-334.166	0/0:91:91,0:91:3255:0:0:0,-27.3937,-293.17	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:102:101,1:101:3624:1:32:0,-27.5057,-323.165	0/1:45:38,7:38:1368:7:248:-9.11784,0,-109.874	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	.:.:.:.:.:.:.:.	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.825	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:83:65,18:65:2340:18:648:-33.6664,0,-185.873	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:128:128,0:128:4582:0:0:0,-38.5318,-412.544	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.428	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/0:144:144,0:144:5157:0:0:0,-43.3483,-464.269	0/1:71:54,17:54:1940:17:612:-34.0403,0,-153.503	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.995	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:66:57,9:57:2052:9:324:-9.63788,0,-165.083	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.738	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:56:35,21:35:1260:21:747:-50.6966,0,-96.8478	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.868	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:176:176,0:176:6324:0:0:0,-52.9813,-569.193	0/0:221:221,0:221:7916:0:0:0,-66.5276,-711.838	0/1:27:20,7:20:720:7:252:-14.9011,0,-57.001	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/0:154:154,0:154:5524:0:0:0,-46.3586,-497.284	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:6:3,3:3:108:3:99:-7.4304,0,-8.26899	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:63:30,33:30:1080:33:1184:-87.9034,0,-78.5484	0/0:167:167,0:167:5957:0:0:0,-50.272,-536.238	0/0:100:100,0:100:3583:0:0:0,-30.103,-322.676	0/0:124:124,0:124:4437:0:0:0,-37.3277,-399.499	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:26:17,9:17:608:9:324:-21.6791,0,-47.2252	0/0:145:145,0:145:5192:0:0:0,-43.6493,-467.417	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:30:19,11:19:676:11:396:-26.9518,0,-52.1371	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:47:25,22:25:900:22:760:-54.5675,0,-67.1726	0/1:35:14,21:14:504:21:748:-57.1092,0,-35.162	0/0:137:137,0:137:4916:0:0:0,-41.2411,-442.59	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709
chr08	25747794	.	TTA	CTA,CTG	122615	PASS	AB=0.507366,0.491713;ABP=3.52218,3.65814;AC=166,22;AF=0.882979,0.117021;AN=188;AO=4933,555;CIGAR=1X2M,1X1M1X;DP=5497;DPB=5497.67;DPRA=59.7283,1.17662;EPP=10714.9,1208.18;EPPR=0;GTI=3;LEN=1,3;MEANALT=1.34783,1.96;MQM=59.6327,50.0468;MQMR=0;NS=94;NUMALT=2;ODDS=0.614359;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=1;QA=176113,19665;QR=0;RO=0;RPL=4933,555;RPP=10714.9,1208.18;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10714.9,1208.18;SAR=4933,555;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12,0:0:0:12,0:417,0:-37.8035,-3.61236,0,-37.8035,-3.61236,-37.8035	1/1:56:0,56,0:0:0:56,0:2012,0:-181.345,-16.8577,0,-181.345,-16.8577,-181.345	1/1:68:0,68,0:0:0:68,0:2421,0:-218.135,-20.47,0,-218.135,-20.47,-218.135	1/1:181:0,180,0:0:0:180,0:6416,0:-577.066,-54.1854,0,-577.066,-54.1854,-577.066	1/1:10:0,10,0:0:0:10,0:360,0:-32.7336,-3.0103,0,-32.7336,-3.0103,-32.7336	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:48:0,48,0:0:0:48,0:1716,0:-154.726,-14.4494,0,-154.726,-14.4494,-154.726	1/1:85:0,84,0:0:0:84,0:2963,0:-266.602,-25.2865,0,-266.602,-25.2865,-266.602	1/1:45:0,45,0:0:0:45,0:1601,0:-144.343,-13.5464,0,-144.343,-13.5464,-144.343	1/1:92:0,92,0:0:0:92,0:3300,0:-297.172,-27.6948,0,-297.172,-27.6948,-297.172	1/1:38:0,38,0:0:0:38,0:1360,0:-122.311,-11.4391,0,-122.311,-11.4391,-122.311	1/1:76:0,76,0:0:0:76,0:2724,0:-245.325,-22.8783,0,-245.325,-22.8783,-245.325	1/1:64:0,64,0:0:0:64,0:2300,0:-207.261,-19.2659,0,-207.261,-19.2659,-207.261	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/1:68:0,67,0:0:0:67,0:2408,0:-216.354,-20.169,0,-216.354,-20.169,-216.354	1/1:35:0,35,0:0:0:35,0:1252,0:-112.964,-10.5361,0,-112.964,-10.5361,-112.964	1/1:32:0,32,0:0:0:32,0:1143,0:-103.148,-9.63296,0,-103.148,-9.63296,-103.148	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5051,-9.0309,0,-97.5051,-9.0309,-97.5051	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:36:0,36,0:0:0:36,0:1281,0:-115.553,-10.8371,0,-115.553,-10.8371,-115.553	1/1:131:0,131,0:0:0:131,0:4655,0:-419.092,-39.4349,0,-419.092,-39.4349,-419.092	1/1:11:0,11,0:0:0:11,0:396,0:-35.9781,-3.31133,0,-35.9781,-3.31133,-35.9781	1/1:72:0,72,0:0:0:72,0:2576,0:-232.086,-21.6742,0,-232.086,-21.6742,-232.086	1/2:30:0,15,15:0:0:15,15:540,528:-87.2618,-43.2067,-38.6913,-44.4104,0,-39.8949	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:221:0,95,126:0:0:95,126:3328,4463:-631.653,-360.952,-332.354,-271.052,0,-233.122	1/1:121:0,121,0:0:0:121,0:4329,0:-389.659,-36.4246,0,-389.659,-36.4246,-389.659	1/2:31:0,16,15:0:0:16,15:576,540:-90.9444,-43.9546,-39.1382,-47.3478,0,-42.8324	1/1:155:0,154,0:0:0:154,0:5516,0:-495.938,-46.3586,0,-495.938,-46.3586,-495.938	1/1:93:0,87,6:0:0:87,6:3079,216:-276.96,-26.1896,0,-259.399,-8.27014,-257.593	1/2:91:0,37,54:0:0:37,54:1283,1860:-254.852,-150.585,-139.447,-104.613,0,-88.3571	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	2/2:1:0,0,1:0:0:0,1:0,36:-3.58923,-3.58923,-3.58923,-0.30103,-0.30103,0	1/1:4:0,4,0:0:0:4,0:140,0:-12.9442,-1.20412,0,-12.9442,-1.20412,-12.9442	1/2:7:0,2,5:0:0:2,5:72,180:-20.8804,-15.0053,-14.4032,-6.23466,0,-4.72951	1/1:173:0,173,0:0:0:173,0:6185,0:-556.703,-52.0782,0,-556.703,-52.0782,-556.703	1/1:38:0,38,0:0:0:38,0:1356,0:-122.311,-11.4391,0,-122.311,-11.4391,-122.311	1/1:49:0,49,0:0:0:49,0:1760,0:-158.668,-14.7505,0,-158.668,-14.7505,-158.668	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:107:0,76,30:0:0:76,30:2728,1069:-309.288,-86.8374,-63.9592,-222.449,0,-213.418	1/2:26:0,12,14:0:0:12,14:432,491:-75.3004,-40.0568,-36.4445,-35.5981,0,-31.3837	1/1:21:0,21,0:0:0:21,0:756,0:-68.3566,-6.32163,0,-68.3566,-6.32163,-68.3566	1/1:59:0,59,0:0:0:59,0:2103,0:-189.531,-17.7608,0,-189.531,-17.7608,-189.531	1/1:48:0,48,0:0:0:48,0:1709,0:-154.066,-14.4494,0,-154.066,-14.4494,-154.066	1/1:38:0,38,0:0:0:38,0:1345,0:-121.341,-11.4391,0,-121.341,-11.4391,-121.341	1/1:29:0,29,0:0:0:29,0:1029,0:-92.913,-8.72987,0,-92.913,-8.72987,-92.913	1/2:73:0,40,33:0:0:40,33:1397,1169:-208.506,-95.1651,-83.1239,-113.691,0,-103.757	1/1:36:0,36,0:0:0:36,0:1277,0:-115.231,-10.8371,0,-115.231,-10.8371,-115.231	1/1:100:0,100,0:0:0:100,0:3596,0:-323.803,-30.103,0,-323.803,-30.103,-323.803	1/1:59:0,59,0:0:0:59,0:2116,0:-190.691,-17.7608,0,-190.691,-17.7608,-190.691	2/2:1:0,0,1:0:0:0,1:0,36:-3.58305,-3.58305,-3.58305,-0.30103,-0.30103,0	1/2:34:0,16,18:0:0:16,18:576,646:-99.908,-52.9083,-48.0919,-47.3585,0,-41.94	1/1:47:0,47,0:0:0:47,0:1679,0:-151.395,-14.1484,0,-151.395,-14.1484,-151.395	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:92:0,54,38:0:0:54,38:1936,1353:-267.453,-109.558,-93.3019,-158.25,0,-146.811	1/1:19:0,19,0:0:0:19,0:684,0:-61.8765,-5.71957,0,-61.8765,-5.71957,-61.8765	1/1:6:0,6,0:0:0:6,0:216,0:-19.7766,-1.80618,0,-19.7766,-1.80618,-19.7766	1/1:8:0,8,0:0:0:8,0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chr08	25882224	.	G	A	173003	PASS	AB=0.537102;ABP=19.9294;AC=165;AF=0.87766;AN=188;AO=6441;CIGAR=1X;DP=7110;DPB=7110;DPRA=25.7391;EPP=320.873;EPPR=5.04504;GTI=2;LEN=1;MEANALT=1.02174;MQM=46.8781;MQMR=46.6822;NS=94;NUMALT=1;ODDS=3.86111;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=230596;QR=23597;RO=667;RPL=14;RPP=13868.1;RPPR=1408.28;RPR=6427;RUN=1;SAF=3720;SAP=339.469;SAR=2721;SRF=351;SRP=6.99839;SRR=316;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:288:-22.602,-2.40824,0	1/1:65:0,65:0:0:65:2327:-182.382,-19.567,0	1/1:33:0,33:0:0:33:1188:-92.3869,-9.93399,0	1/1:88:0,88:0:0:88:3147:-279.691,-26.4906,0	1/1:37:0,37:0:0:37:1328:-114.121,-11.1381,0	1/1:26:0,26:0:0:26:924:-72.3102,-7.82678,0	1/1:118:0,118:0:0:118:4221:-371.086,-35.5215,0	1/1:56:0,56:0:0:56:2008:-156.33,-16.8577,0	1/1:37:0,37:0:0:37:1320:-101.585,-11.1381,0	1/1:82:0,82:0:0:82:2936:-259.124,-24.6845,0	1/1:101:0,101:0:0:101:3612:-319.338,-30.404,0	1/1:66:0,66:0:0:66:2372:-185.536,-19.868,0	1/1:44:0,44:0:0:44:1576:-122.641,-13.2453,0	1/1:140:0,140:0:0:140:5020:-424.4,-42.1442,0	1/1:89:0,89:0:0:89:3192:-282.917,-26.7917,0	1/1:98:0,98:0:0:98:3508:-296.768,-29.5009,0	1/1:79:0,79:0:0:79:2824:-220.051,-23.7814,0	1/1:51:0,51:0:0:51:1824:-141.178,-15.3525,0	1/1:36:0,36:0:0:36:1292:-100.101,-10.8371,0	1/1:107:0,107:0:0:107:3814:-335.936,-32.2102,0	1/1:130:0,130:0:0:130:4660:-389.148,-39.1339,0	1/1:34:0,34:0:0:34:1203:-105.84,-10.235,0	1/1:72:0,72:0:0:72:2588:-228.634,-21.6742,0	0/1:126:68,58:68:2419:58:2080:-130.87,0,-164.219	1/1:62:0,62:0:0:62:2224:-189.312,-18.6639,0	0/1:167:85,82:85:2989:82:2944:-210.107,0,-203.678	1/1:157:0,157:0:0:157:5612:-488.238,-47.2617,0	0/1:64:30,34:30:1063:34:1216:-81.9647,0,-72.4602	1/1:130:0,130:0:0:130:4650:-410.635,-39.1339,0	0/1:82:15,67:15:540:67:2400:-173.674,0,-21.9888	0/1:83:36,47:36:1265:47:1678:-122.878,0,-85.2487	0/1:19:6,13:6:208:13:468:-36.116,0,-12.8557	1/1:18:0,18:0:0:18:648:-57.1747,-5.41854,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-2.94622	1/1:4:0,4:0:0:4:144:-12.7006,-1.20412,0	1/1:1:0,1:0:0:1:36:-2.90276,-0.30103,0	1/1:262:0,262:0:0:262:9360:-829.436,-78.8699,0	1/1:47:0,47:0:0:47:1680:-136.801,-14.1484,0	1/1:65:0,65:0:0:65:2332:-181.17,-19.567,0	1/1:10:0,10:0:0:10:360:-31.2599,-3.0103,0	0/1:109:50,59:50:1779:59:2116:-149.003,0,-119.356	0/1:60:27,33:27:952:33:1184:-83.1618,0,-66.3628	1/1:118:0,118:0:0:118:4228:-360.295,-35.5215,0	1/1:139:1,138:1:36:138:4931:-426.553,-38.2475,0	1/1:102:0,102:0:0:102:3647:-318.61,-30.7051,0	1/1:83:0,83:0:0:83:2968:-262.179,-24.9855,0	1/1:45:0,45:0:0:45:1612:-124.824,-13.5464,0	0/1:91:59,32:59:2100:32:1152:-74.8946,0,-157.844	1/1:64:0,64:0:0:64:2283:-200.81,-19.2659,0	1/1:67:0,67:0:0:67:2386:-211.599,-20.169,0	1/1:75:0,74:0:0:74:2635:-228.881,-22.2762,0	0/1:10:4,6:4:140:6:216:-16.4298,0,-9.35815	0/1:30:15,15:15:523:15:540:-34.0207,0,-33.4814	1/1:30:0,30:0:0:30:1072:-94.7362,-9.0309,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.3687	0/1:76:46,30:46:1623:30:1076:-65.0082,0,-116.12	1/1:41:0,41:0:0:41:1432:-126.589,-12.3422,0	1/1:9:0,9:0:0:9:324:-29.4188,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.1411,-1.20412,0	1/1:78:0,78:0:0:78:2769:-236.023,-23.4803,0	1/1:153:1,152:1:36:152:5456:-477.886,-42.4593,0	1/1:7:0,7:0:0:7:252:-22.7668,-2.10721,0	1/1:60:0,60:0:0:60:2156:-189.981,-18.0618,0	1/1:98:0,98:0:0:98:3498:-307.795,-29.5009,0	0/1:68:25,43:25:896:43:1544:-104.522,0,-54.5397	1/1:41:0,41:0:0:41:1460:-128.303,-12.3422,0	1/1:108:3,105:3:108:105:3760:-319.535,-22.9067,0	1/1:104:0,104:0:0:104:3723:-326.921,-31.3071,0	1/1:84:0,84:0:0:84:3020:-262.55,-25.2865,0	1/1:51:0,51:0:0:51:1828:-143.638,-15.3525,0	1/1:100:0,100:0:0:100:3588:-316.029,-30.103,0	0/1:19:11,8:11:396:8:284:-19.8349,0,-29.1171	1/1:32:0,32:0:0:32:1148:-91.1168,-9.63296,0	0/1:50:24,26:24:852:26:932:-60.274,0,-51.2622	1/1:180:0,180:0:0:180:6452:-541.602,-54.1854,0	1/1:83:0,83:0:0:83:2980:-261.88,-24.9855,0	1/1:54:0,54:0:0:54:1940:-153.031,-16.2556,0	1/1:29:0,29:0:0:29:1036:-82.0451,-8.72987,0	1/1:4:0,4:0:0:4:144:-11.6099,-1.20412,0	1/1:63:1,62:1:36:62:2212:-180.598,-15.7187,0	0/1:28:12,16:12:423:16:576:-36.7675,0,-25.1458	1/1:154:0,154:0:0:154:5524:-484.637,-46.3586,0	1/1:190:0,190:0:0:190:6824:-601.896,-57.1957,0	1/1:103:0,103:0:0:103:3700:-328.241,-31.0061,0	1/1:133:0,133:0:0:133:4755:-415.506,-40.037,0	1/1:208:0,208:0:0:208:7442:-653.515,-62.6142,0	1/1:43:0,43:0:0:43:1544:-119.976,-12.9443,0	0/1:63:23,40:23:796:40:1428:-91.6344,0,-44.4869	1/1:55:0,55:0:0:55:1980:-154.986,-16.5567,0	1/1:69:0,69:0:0:69:2468:-215.545,-20.7711,0	0/1:154:59,94:59:2079:94:3376:-244.486,0,-134.711	0/1:116:59,57:59:2090:57:2048:-147.437,0,-147.674	1/1:80:1,79:1:36:79:2795:-241.805,-20.4867,0	1/1:195:0,195:0:0:195:7004:-616.043,-58.7009,0
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chr08	26031119	.	G	A	62343.8	PASS	AB=0.401907;ABP=64.3559;AC=164;AF=0.891304;AN=184;AO=2818;CIGAR=1X;DP=3260;DPB=3260;DPRA=0;EPP=6122.22;EPPR=960.63;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.406;MQMR=60;NS=92;NUMALT=1;ODDS=0.390146;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100299;QR=15773;RO=441;RPL=0;RPP=6122.22;RPPR=960.63;RPR=2818;RUN=1;SAF=2818;SAP=6122.22;SAR=0;SRF=441;SRP=960.63;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:25:0,25:0:0:25:881:-79.6025,-7.52575,0	1/1:22:0,22:0:0:22:784:-70.8576,-6.62266,0	1/1:79:0,79:0:0:79:2786:-250.809,-23.7814,0	1/1:6:0,6:0:0:6:216:-19.7858,-1.80618,0	1/1:11:0,11:0:0:11:392:-35.6053,-3.31133,0	1/1:38:0,38:0:0:38:1339:-120.79,-11.4391,0	1/1:27:0,27:0:0:27:964:-87.0735,-8.12781,0	1/1:31:0,31:0:0:31:1112:-100.383,-9.33193,0	1/1:47:0,47:0:0:47:1677:-151.203,-14.1484,0	1/1:60:0,60:0:0:60:2139:-192.77,-18.0618,0	1/1:70:0,70:0:0:70:2476:-223.058,-21.0721,0	1/1:56:0,56:0:0:56:2003:-180.463,-16.8577,0	1/1:42:0,42:0:0:42:1507:-135.907,-12.6433,0	1/1:45:0,45:0:0:45:1608:-144.998,-13.5464,0	1/1:36:0,36:0:0:36:1269:-114.502,-10.8371,0	1/1:41:0,41:0:0:41:1460:-131.68,-12.3422,0	1/1:31:0,31:0:0:31:1116:-100.748,-9.33193,0	1/1:24:0,24:0:0:24:836:-75.5527,-7.22472,0	1/1:33:0,33:0:0:33:1157:-104.261,-9.93399,0	1/1:69:0,69:0:0:69:2472:-222.006,-20.7711,0	1/1:8:0,8:0:0:8:288:-26.2641,-2.40824,0	1/1:26:0,26:0:0:26:913:-82.3953,-7.82678,0	0/1:32:12,20:12:432:20:716:-55.1301,0,-29.5882	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:89:58,31:58:2088:31:1112:-73.5915,0,-161.398	1/1:58:0,58:0:0:58:2059:-185.435,-17.4597,0	0/1:14:8,6:8:284:6:216:-15.4443,0,-21.6889	1/1:64:0,64:0:0:64:2292:-206.27,-19.2659,0	1/1:35:1,34:1:36:34:1220:-106.499,-6.93778,0	0/1:41:23,18:23:809:18:640:-45.5789,0,-60.7861	1/1:4:0,4:0:0:4:125:-11.5586,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:113:0,113:0:0:113:4011:-361.155,-34.0164,0	1/1:9:0,9:0:0:9:320:-29.1202,-2.70927,0	1/1:35:0,35:0:0:35:1252:-112.984,-10.5361,0	.:.:.:.:.:.:.:.	0/1:49:30,19:30:1080:19:680:-46.752,0,-82.7628	0/1:26:9,17:9:309:17:600:-46.5024,0,-20.3139	1/1:20:0,20:0:0:20:697:-63.046,-6.0206,0	1/1:45:0,45:0:0:45:1616:-145.723,-13.5464,0	1/1:35:0,35:0:0:35:1256:-113.302,-10.5361,0	1/1:12:0,12:0:0:12:432:-39.2203,-3.61236,0	1/1:12:0,12:0:0:12:428:-38.8424,-3.61236,0	0/1:53:31,22:31:1112:22:792:-55.6203,0,-84.4368	1/1:23:0,23:0:0:23:820:-74.1132,-6.92369,0	1/1:25:0,25:0:0:25:876:-79.131,-7.52575,0	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	0/1:4:2,2:2:72:2:72:-5.62767,0,-5.6326	0/1:39:19,20:19:672:20:716:-52.9743,0,-49.0667	1/1:11:0,11:0:0:11:392:-35.6191,-3.31133,0	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:46:29,16:29:1040:16:576:-38.2642,0,-80.0082	1/1:9:0,9:0:0:9:305:-27.7772,-2.70927,0	1/1:6:0,6:0:0:6:211:-19.3318,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:31:0,31:0:0:31:1108:-99.7528,-9.33193,0	1/1:58:1,57:1:36:57:2038:-180.046,-13.8615,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:67:0,67:0:0:67:2392:-215.526,-20.169,0	1/1:27:0,27:0:0:27:968:-87.4328,-8.12781,0	0/1:34:23,11:23:828:11:384:-24.6439,0,-64.6091	1/1:16:0,16:0:0:16:561:-50.8147,-4.81648,0	1/1:55:0,55:0:0:55:1937:-174.08,-16.5567,0	1/1:33:0,33:0:0:33:1154:-104.031,-9.93399,0	1/1:37:0,37:0:0:37:1310:-118.166,-11.1381,0	1/1:21:0,21:0:0:21:743:-66.9059,-6.32163,0	1/1:32:0,32:0:0:32:1151:-103.899,-9.63296,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:32:0,32:0:0:32:1140:-102.759,-9.63296,0	0/1:64:46,18:46:1640:18:622:-37.0157,0,-128.623	1/1:56:0,56:0:0:56:1992:-179.554,-16.8577,0	1/1:61:0,61:0:0:61:2158:-194.472,-18.3628,0	1/1:20:0,20:0:0:20:697:-63.0342,-6.0206,0	1/1:65:0,65:0:0:65:2295:-206.283,-19.567,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:37:1,36:1:36:36:1292:-112.972,-7.53984,0	0/1:43:25,18:25:892:18:640:-44.7861,0,-67.6554	1/1:73:0,73:0:0:73:2612:-235.303,-21.9752,0	1/1:38:0,38:0:0:38:1357:-122.425,-11.4391,0	1/1:46:0,46:0:0:46:1643:-148.156,-13.8474,0	1/1:33:0,33:0:0:33:1184:-106.769,-9.93399,0	1/1:59:0,59:0:0:59:2107:-189.898,-17.7608,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:45:30,15:30:1076:15:527:-34.2138,0,-83.6065	1/1:44:0,44:0:0:44:1572:-141.732,-13.2453,0	1/1:31:0,31:0:0:31:1116:-100.742,-9.33193,0	0/1:67:36,31:36:1292:31:1116:-80.5689,0,-96.4148	0/1:60:45,15:45:1607:15:540:-30.8747,0,-126.858	1/1:74:0,74:0:0:74:2640:-237.759,-22.2762,0	1/1:72:0,72:0:0:72:2584:-232.799,-21.6742,0
chr08	26031163	.	TGCCA	GGCCG,GGCCA	171317	PASS	AB=0.415152,0.572727;ABP=85.5526,63.6536;AC=163,21;AF=0.88587,0.11413;AN=184;AO=5569,774;CIGAR=1X3M1X,1X4M;DP=6419;DPB=6420;DPRA=17.6236,1.13987;EPP=12052.5,1683.73;EPPR=9.52472;GTI=1;LEN=5,1;MEANALT=2.03297,2.75862;MQM=59.6922,59.9742;MQMR=60;NS=92;NUMALT=2;ODDS=2.24908;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=81.5,81.5;PQR=0;PRO=0;QA=189657,27172;QR=99;RO=3;RPL=2843,423;RPP=8.34793,17.5541;RPPR=3.73412;RPR=2726,351;RUN=1,1;SAF=2842,423;SAP=8.16701,17.5541;SAR=2727,351;SRF=2;SRP=3.73412;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23,0:0:0:23,0:799,0:-72.2266,-6.92369,0,-72.2266,-6.92369,-72.2266	1/1:71:0,71,0:0:0:71,0:2410,0:-217.147,-21.3731,0,-217.147,-21.3731,-217.147	1/1:69:0,68,1:0:0:68,1:2312,36:-207.964,-20.47,0,-205.026,-17.1728,-204.725	1/1:195:0,193,0:0:0:193,0:6585,0:-592.431,-58.0988,0,-592.431,-58.0988,-592.431	1/1:9:0,9,0:0:0:9,0:315,0:-28.6836,-2.70927,0,-28.6836,-2.70927,-28.6836	1/1:15:0,15,0:0:0:15,0:507,0:-45.8981,-4.51545,0,-45.8981,-4.51545,-45.8981	1/1:77:0,76,0:0:0:76,0:2588,0:-232.872,-22.8783,0,-232.872,-22.8783,-232.872	1/1:56:0,55,0:0:0:55,0:1830,0:-164.672,-16.5567,0,-164.672,-16.5567,-164.672	1/1:64:0,64,0:0:0:64,0:2188,0:-197.176,-19.2659,0,-197.176,-19.2659,-197.176	1/1:88:0,88,0:0:0:88,0:3044,0:-274.186,-26.4906,0,-274.186,-26.4906,-274.186	1/1:75:0,73,1:0:0:73,1:2491,27:-224.119,-21.9752,0,-221.992,-19.8965,-221.691	1/1:141:0,139,0:0:0:139,0:4632,0:-416.777,-41.8432,0,-416.777,-41.8432,-416.777	1/1:106:0,106,0:0:0:106,0:3557,0:-320.294,-31.9092,0,-320.294,-31.9092,-320.294	1/1:76:0,74,0:0:0:74,0:2485,0:-223.603,-22.2762,0,-223.603,-22.2762,-223.603	1/1:85:0,85,0:0:0:85,0:2920,0:-263.032,-25.5876,0,-263.032,-25.5876,-263.032	1/1:66:0,65,0:0:0:65,0:2179,0:-196.053,-19.567,0,-196.053,-19.567,-196.053	1/1:64:0,64,0:0:0:64,0:2128,0:-191.772,-19.2659,0,-191.772,-19.2659,-191.772	1/1:60:0,59,0:0:0:59,0:1972,0:-177.396,-17.7608,0,-177.396,-17.7608,-177.396	1/1:42:0,41,1:0:0:41,1:1406,36:-126.471,-12.3422,0,-123.533,-9.04499,-123.232	1/1:75:0,74,0:0:0:74,0:2496,0:-224.655,-22.2762,0,-224.655,-22.2762,-224.655	1/1:130:0,127,0:0:0:127,0:4363,0:-392.455,-38.2308,0,-392.455,-38.2308,-392.455	1/1:11:0,11,0:0:0:11,0:357,0:-32.4428,-3.31133,0,-32.4428,-3.31133,-32.4428	1/1:47:0,44,0:0:0:44,0:1527,0:-137.431,-13.2453,0,-137.431,-13.2453,-137.431	1/2:44:0,26,18:0:0:26,18:873,644:-123.572,-52.8721,-45.0453,-71.0484,0,-65.6299	1/2:10:0,9,1:0:0:9,1:304,36:-27.9178,-3.29724,-0.587975,-24.9782,0,-24.6772	1/2:144:1,49,92:1:27:49,92:1664,3239:-396.273,-261.631,-249.008,-132.879,0,-107.312	1/1:117:0,117,0:0:0:117,0:3992,0:-359.471,-35.2205,0,-359.471,-35.2205,-359.471	1/2:47:0,20,27:0:0:20,27:666,932:-129.946,-76.0617,-70.0411,-54.2225,0,-46.0947	1/1:141:0,141,0:0:0:141,0:4862,0:-437.66,-42.4452,0,-437.66,-42.4452,-437.66	1/1:79:0,72,7:0:0:72,7:2491,252:-224.077,-21.6742,0,-203.513,-0.752411,-201.406	1/2:67:0,32,34:0:0:32,34:1101,1220:-188.932,-99.5217,-89.8887,-89.4115,0,-79.1765	1/1:4:0,4,0:0:0:4,0:141,0:-13.037,-1.20412,0,-13.037,-1.20412,-13.037	1/1:5:0,5,0:0:0:5,0:170,0:-15.6338,-1.50515,0,-15.6338,-1.50515,-15.6338	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:134,0:-12.3909,-1.20412,0,-12.3909,-1.20412,-12.3909	1/2:10:0,8,2:0:0:8,2:274,72:-28.4625,-6.23466,-3.82642,-22.5842,0,-21.9821	1/1:209:0,203,0:0:0:203,0:6813,0:-612.981,-61.1091,0,-612.981,-61.1091,-612.981	1/1:20:0,20,0:0:0:20,0:648,0:-58.6091,-6.0206,0,-58.6091,-6.0206,-58.6091	1/1:50:0,48,0:0:0:48,0:1610,0:-144.88,-14.4494,0,-144.88,-14.4494,-144.88	.:.:.:.:.:.:.:.	1/2:110:1,46,62:1:36:46,62:1575,2191:-303.074,-175.546,-164.636,-124.931,0,-109.205	1/2:46:0,28,17:0:0:28,17:981,591:-127.962,-48.1329,-39.7041,-79.9117,0,-74.7942	1/1:41:0,40,0:0:0:40,0:1371,0:-123.42,-12.0412,0,-123.42,-12.0412,-123.42	1/1:81:0,81,0:0:0:81,0:2735,0:-246.394,-24.3834,0,-246.394,-24.3834,-246.394	1/1:87:0,80,0:0:0:80,0:2685,0:-241.615,-24.0824,0,-241.615,-24.0824,-241.615	1/1:34:0,33,0:0:0:33,0:1135,0:-102.091,-9.93399,0,-102.091,-9.93399,-102.091	1/1:34:0,33,0:0:0:33,0:1137,0:-102.385,-9.93399,0,-102.385,-9.93399,-102.385	1/2:100:1,35,62:1:36:35,62:1208,2186:-272.871,-175.045,-167.446,-95.1791,0,-79.4531	1/1:53:0,53,0:0:0:53,0:1843,0:-166.142,-15.9546,0,-166.142,-15.9546,-166.142	1/1:64:0,63,0:0:0:63,0:2157,0:-194.023,-18.9649,0,-194.023,-18.9649,-194.023	1/1:46:0,44,0:0:0:44,0:1533,0:-137.974,-13.2453,0,-137.974,-13.2453,-137.974	2/2:4:0,0,2:0:0:0,2:0,72:-6.47702,-6.47702,-6.47702,-0.60206,-0.60206,0	1/2:70:0,38,32:0:0:38,32:1282,1124:-195.678,-91.8322,-80.3931,-104.191,0,-94.558	1/1:27:0,27,0:0:0:27,0:921,0:-83.198,-8.12781,0,-83.198,-8.12781,-83.198	1/2:3:0,2,1:0:0:2,1:62,36:-8.2402,-3.29724,-2.69518,-5.28614,0,-4.98511	1/2:94:0,38,54:0:0:38,54:1285,1896:-258.336,-154.176,-142.736,-104.15,0,-87.8943	1/1:14:0,14,0:0:0:14,0:492,0:-44.6127,-4.21442,0,-44.6127,-4.21442,-44.6127	1/1:6:0,6,0:0:0:6,0:202,0:-18.5091,-1.80618,0,-18.5091,-1.80618,-18.5091	1/1:9:0,9,0:0:0:9,0:319,0:-29.0328,-2.70927,0,-29.0328,-2.70927,-29.0328	1/1:62: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chr08	26031336	.	T	C	121076	PASS	AB=0.370988;ABP=228.247;AC=160;AF=0.851064;AN=188;AO=5629;CIGAR=1X;DP=8997;DPB=8997;DPRA=0;EPP=12226.2;EPPR=7314.36;GTI=21;LEN=1;MEANALT=1.01064;MQM=59.2677;MQMR=59.3306;NS=94;NUMALT=1;ODDS=0.70357;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200359;QR=119851;RO=3367;RPL=5;RPP=12182.8;RPPR=7305.67;RPR=5624;RUN=1;SAF=5;SAP=12182.8;SAR=5624;SRF=1;SRP=7305.67;SRR=3366;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:648:-58.6113,-5.41854,0	1/1:70:0,70:0:0:70:2496:-224.692,-21.0721,0	1/1:85:0,85:0:0:85:3029:-272.814,-25.5876,0	1/1:97:0,97:0:0:97:3464:-311.705,-29.1999,0	1/1:38:0,38:0:0:38:1359:-122.52,-11.4391,0	1/1:14:0,14:0:0:14:492:-44.5764,-4.21442,0	1/1:97:0,97:0:0:97:3464:-311.629,-29.1999,0	1/1:111:1,110:1:36:110:3933:-350.303,-29.8161,0	1/1:66:0,66:0:0:66:2329:-209.751,-19.868,0	1/1:69:1,68:1:36:68:2409:-213.466,-17.1728,0	1/1:69:0,69:0:0:69:2419:-217.677,-20.7711,0	1/1:56:0,56:0:0:56:1976:-177.79,-16.8577,0	1/1:56:0,56:0:0:56:2000:-180.072,-16.8577,0	1/1:94:0,94:0:0:94:3336:-300.193,-28.2968,0	1/1:50:0,50:0:0:50:1775:-159.945,-15.0515,0	1/1:35:0,35:0:0:35:1238:-111.699,-10.5361,0	1/1:44:0,44:0:0:44:1574:-141.891,-13.2453,0	1/1:47:0,47:0:0:47:1672:-150.338,-14.1484,0	1/1:34:0,34:0:0:34:1197:-107.993,-10.235,0	1/1:144:0,144:0:0:144:5117:-460.548,-43.3483,0	1/1:87:0,87:0:0:87:3084:-277.701,-26.1896,0	1/1:74:0,74:0:0:74:2644:-237.98,-22.2762,0	1/1:20:0,20:0:0:20:677:-61.1991,-6.0206,0	0/1:63:39,24:39:1388:24:852:-58.0355,0,-106.196	1/1:42:0,42:0:0:42:1504:-135.653,-12.6433,0	0/1:208:106,102:106:3777:102:3613:-262.669,0,-277.474	1/1:145:0,145:0:0:145:5180:-465.749,-43.6494,0	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	1/1:239:0,239:0:0:239:8496:-764.35,-71.9462,0	1/1:51:0,51:0:0:51:1828:-164.727,-15.3525,0	0/1:83:32,51:32:1140:51:1809:-137.806,0,-77.91	0/0:426:422,4:422:14976:4:144:0,-114.934,-1333.62	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/0:508:502,6:502:17870:6:216:0,-133.169,-1586.22	0/1:5:1,4:1:36:4:138:-11.1738,0,-2.09312	0/0:452:440,12:440:15627:12:424:0,-97.6797,-1367.09	1/1:161:0,161:0:0:161:5722:-514.961,-48.4658,0	1/1:169:1,168:1:36:168:5970:-533.579,-47.2758,0	1/1:51:0,51:0:0:51:1808:-162.839,-15.3525,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:83:48,35:48:1728:35:1240:-86.857,0,-130.82	0/1:112:95,17:95:3399:17:611:-21.5673,0,-272.328	1/1:113:3,110:3:108:110:3936:-344.15,-23.9644,0	1/1:55:0,55:0:0:55:1936:-174.5,-16.5567,0	1/1:39:0,39:0:0:39:1388:-125.191,-11.7402,0	1/1:85:0,85:0:0:85:3034:-273.186,-25.5876,0	1/1:106:0,106:0:0:106:3780:-340.22,-31.9092,0	0/1:138:73,65:73:2620:65:2328:-167.425,0,-194.483	1/1:67:0,67:0:0:67:2394:-215.688,-20.169,0	1/1:75:0,75:0:0:75:2692:-242.253,-22.5773,0	1/1:85:0,85:0:0:85:3017:-271.735,-25.5876,0	0/0:391:387,4:387:13760:4:140:0,-104.758,-1224.11	0/1:107:48,59:48:1708:59:2115:-158.334,0,-121.709	1/1:16:0,16:0:0:16:576:-52.1716,-4.81648,0	0/0:364:361,3:361:12896:3:108:0,-99.5368,-1149.44	0/1:114:76,38:76:2724:38:1368:-89.0586,0,-210.193	1/1:26:0,26:0:0:26:895:-80.8457,-7.82678,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:11:1,10:1:21:10:360:-30.6444,-1.21138,0	1/1:26:0,26:0:0:26:936:-84.5591,-7.82678,0	1/1:106:0,106:0:0:106:3756:-338.227,-31.9092,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:114:0,114:0:0:114:4077:-367.106,-34.3174,0	1/1:93:1,92:1:36:92:3273:-291.113,-24.3975,0	0/1:33:22,11:22:784:11:396:-26.0488,0,-60.9499	1/1:45:0,45:0:0:45:1592:-143.549,-13.5464,0	1/1:107:1,106:1:36:106:3760:-334.927,-28.6119,0	1/1:36:0,36:0:0:36:1281:-115.591,-10.8371,0	1/1:29:0,29:0:0:29:1040:-93.8246,-8.72987,0	1/1:64:0,64:0:0:64:2280:-205.386,-19.2659,0	1/1:70:0,70:0:0:70:2494:-224.702,-21.0721,0	0/0:274:267,7:267:9485:7:252:0,-59.4533,-830.323	1/1:55:0,55:0:0:55:1941:-174.593,-16.5567,0	0/1:37:16,20:16:572:20:708:-52.8723,0,-40.6179	1/1:100:0,100:0:0:100:3557:-320.193,-30.103,0	1/1:133:0,133:0:0:133:4754:-427.894,-40.037,0	1/1:64:0,64:0:0:64:2282:-205.498,-19.2659,0	1/1:83:0,83:0:0:83:2980:-268.382,-24.9855,0	1/1:12:0,12:0:0:12:428:-38.8584,-3.61236,0	1/1:85:0,85:0:0:85:3048:-274.242,-25.5876,0	0/1:94:53,41:53:1892:41:1447:-102.209,0,-142.151	1/1:146:0,146:0:0:146:5204:-468.422,-43.9504,0	1/1:95:0,95:0:0:95:3363:-302.365,-28.5979,0	1/1:67:0,67:0:0:67:2382:-214.602,-20.169,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	1/1:116:0,116:0:0:116:4110:-369.951,-34.9195,0	1/1:37:0,37:0:0:37:1316:-118.578,-11.1381,0	0/1:57:27,30:27:959:30:1074:-79.7548,0,-69.3899	1/1:40:0,40:0:0:40:1411:-127.257,-12.0412,0	1/1:61:0,61:0:0:61:2180:-196.412,-18.3628,0	0/1:375:319,56:319:11354:56:1992:-66.556,0,-908.139	0/1:30:17,13:17:595:13:461:-32.7918,0,-44.8444	1/1:87:0,87:0:0:87:3094:-278.657,-26.1896,0	1/1:63:0,63:0:0:63:2260:-203.635,-18.9649,0
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chr08	26066968	.	C	G	21121.6	PASS	AB=0.337254;ABP=1078.75;AC=85;AF=0.456989;AN=186;AO=1584;CIGAR=1X;DP=4800;DPB=4800;DPRA=13.7241;EPP=3433.94;EPPR=6815.9;GTI=11;LEN=1;MEANALT=1.03448;MQM=54.5859;MQMR=59.5254;NS=93;NUMALT=1;ODDS=0.991255;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56605;QR=115250;RO=3213;RPL=0;RPP=3442.62;RPPR=6833.07;RPR=1584;RUN=1;SAF=1583;SAP=3433.94;SAR=1;SRF=3211;SRP=6962.59;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:7,9:7:252:9:320:-24.3109,0,-18.2125	0/1:30:21,9:21:756:9:324:-20.4667,0,-59.333	0/1:91:59,32:59:2101:32:1136:-75.0993,0,-161.956	0/1:87:58,29:58:2088:29:1040:-67.4153,0,-161.995	0/1:16:13,3:13:468:3:108:-5.24837,0,-37.6432	0/1:18:11,7:11:392:7:244:-16.8741,0,-30.1969	0/1:70:49,21:49:1752:21:752:-46.5061,0,-136.867	0/1:49:29,20:29:1036:20:720:-50.2765,0,-78.7988	0/1:35:22,13:22:792:13:468:-31.9088,0,-61.0663	0/1:49:27,22:27:968:22:792:-56.7227,0,-72.6845	0/1:33:18,15:18:648:15:525:-37.4924,0,-48.7151	0/1:80:54,26:54:1927:26:936:-60.3156,0,-149.62	0/1:80:58,22:58:2080:22:792:-47.4614,0,-163.376	0/1:39:25,14:25:879:14:504:-33.9379,0,-67.682	0/1:53:35,18:35:1260:18:644:-42.0606,0,-97.7127	0/1:70:32,38:32:1148:38:1360:-101.369,0,-82.5577	0/1:38:25,13:25:891:13:468:-31.0072,0,-69.0696	0/1:37:28,9:28:1008:9:324:-18.29,0,-79.7887	0/1:13:10,3:10:360:3:108:-6.15896,0,-28.8275	0/1:36:31,5:31:1112:5:180:-5.2531,0,-89.5496	0/1:92:56,36:56:2004:36:1281:-87.861,0,-152.938	0/0:71:66,5:66:2368:5:180:0,-4.86268,-196.867	0/1:37:30,7:30:1076:7:252:-11.847,0,-86.0124	0/1:12:7,5:7:252:5:180:-12.9351,0,-19.4166	0/1:30:22,8:22:788:8:288:-17.1596,0,-62.144	0/1:130:112,18:112:4024:18:633:-17.909,0,-323.203	0/1:115:65,50:65:2340:50:1788:-126.537,0,-176.236	0/1:42:21,21:21:756:21:756:-55.6286,0,-55.7193	0/1:94:55,39:55:1976:39:1404:-97.9719,0,-149.811	0/1:28:25,3:25:896:3:108:-1.64351,0,-72.5177	0/1:62:34,28:34:1205:28:970:-68.7325,0,-90.0868	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:14:11,3:11:388:3:108:-5.78676,0,-31.0429	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:13:8,5:8:288:5:180:-12.6326,0,-22.354	0/1:10:7,3:7:252:3:108:-7.06205,0,-20.0153	0/1:182:131,51:131:4716:51:1787:-105.546,0,-369.697	0/1:18:9,9:9:324:9:324:-23.8465,0,-24.0169	0/1:32:15,17:15:540:17:608:-45.3902,0,-39.3002	.:.:.:.:.:.:.:.	0/1:48:25,22:25:900:22:792:-57.0779,0,-66.4868	0/1:52:24,28:24:864:28:1004:-74.9735,0,-62.3591	0/1:51:36,15:36:1273:15:525:-32.209,0,-99.5068	0/1:51:29,22:29:1044:22:792:-55.7389,0,-78.8312	0/1:72:38,34:38:1359:34:1201:-86.2547,0,-100.923	0/1:42:35,7:35:1256:7:252:-10.1764,0,-100.697	0/0:29:27,2:27:972:2:72:0,-1.89506,-80.9507	0/1:59:36,22:36:1296:22:792:-52.6509,0,-98.0811	0/1:42:21,21:21:752:21:746:-54.2811,0,-55.363	0/1:58:44,14:44:1576:14:504:-28.1513,0,-124.558	0/1:19:14,5:14:504:5:176:-10.4288,0,-39.9785	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0171	0/1:46:33,13:33:1180:13:468:-28.599,0,-92.6382	0/1:35:24,11:24:860:11:396:-25.2057,0,-67.1858	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7308	0/1:55:36,19:36:1288:19:676:-44.5588,0,-99.5575	0/1:7:6,1:6:216:1:36:-1.49006,0,-17.6833	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:7,5:7:252:5:180:-12.8981,0,-19.4166	0/1:47:34,13:34:1224:13:468:-28.2301,0,-96.2911	0/1:78:62,16:62:2223:16:576:-28.3783,0,-176.844	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59568	0/1:139:105,34:105:3772:34:1224:-68.3377,0,-297.175	0/1:65:44,21:44:1576:21:752:-48.3067,0,-122.561	0/1:24:16,8:16:576:8:288:-18.5395,0,-44.9374	0/1:29:25,4:25:896:4:144:-4.40316,0,-72.2258	0/1:48:32,16:32:1148:16:576:-37.6262,0,-89.165	0/1:75:54,21:54:1940:21:741:-44.3154,0,-152.12	0/1:25:17,8:17:612:8:273:-17.368,0,-47.8831	0/1:21:15,6:15:540:6:216:-13.2956,0,-42.6082	0/1:57:28,29:28:1004:29:1040:-76.4525,0,-73.5172	0/1:21:13,8:13:468:8:288:-19.8958,0,-36.138	0/1:71:45,26:45:1620:26:911:-60.8902,0,-124.71	0/1:100:56,44:56:2016:44:1584:-112.638,0,-151.61	0/1:50:31,19:31:1112:19:684:-46.7525,0,-85.2754	0/1:73:48,25:48:1728:25:885:-57.6945,0,-133.828	0/1:37:25,12:25:892:12:413:-26.2116,0,-69.3036	0/1:76:66,9:66:2372:9:318:-5.99805,0,-190.731	0/1:22:15,7:15:528:7:252:-16.3999,0,-41.2287	0/1:61:48,13:48:1728:13:462:-23.1092,0,-137.327	0/1:47:27,20:27:968:20:716:-50.6002,0,-73.289	0/1:103:73,30:73:2612:30:1080:-66.1751,0,-204.072	0/1:67:56,11:56:2016:11:396:-15.7452,0,-161.539	0/1:71:41,30:41:1468:30:1080:-75.6512,0,-111.038	0/1:52:28,24:28:1008:24:864:-62.0624,0,-75.3828	0/1:109:74,35:74:2656:35:1245:-78.794,0,-206.38	0/1:20:12,8:12:432:8:288:-20.2395,0,-33.2006	0/1:82:61,21:61:2176:21:752:-43.3032,0,-171.383	0/1:71:47,24:47:1683:24:849:-55.3338,0,-129.846	0/1:42:23,19:23:813:19:684:-49.0917,0,-60.8174	0/1:69:50,19:50:1796:19:680:-40.6794,0,-141.115	0/1:58:44,14:44:1580:14:504:-28.1118,0,-124.901	0/1:134:78,56:78:2800:56:2012:-140.449,0,-211.806	0/1:132:75,57:75:2700:57:2048:-144.49,0,-203.414
chr08	26067124	.	T	A	45979	PASS	AB=0.367212;ABP=1350.16;AC=91;AF=0.484043;AN=188;AO=3238;CIGAR=1X;DP=8919;DPB=8919;DPRA=32.2935;EPP=7034.24;EPPR=12284.9;GTI=11;LEN=1;MEANALT=1.01087;MQM=48.4231;MQMR=59.9754;NS=94;NUMALT=1;ODDS=0.215207;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115847;QR=202951;RO=5680;RPL=3238;RPP=7034.24;RPPR=12284.9;RPR=0;RUN=1;SAF=0;SAP=7034.24;SAR=3238;SRF=0;SRP=12337;SRR=5680;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:11,3:11:396:3:108:-5.81812,0,-31.7683	0/1:141:113,28:113:4040:28:1008:-48.2003,0,-320.853	0/1:105:66,39:66:2372:39:1372:-91.6736,0,-182.13	0/1:159:122,37:122:4356:37:1324:-70.1984,0,-344.352	0/1:50:37,13:37:1324:13:468:-27.1562,0,-104.411	0/1:28:16,12:16:576:12:424:-29.8911,0,-43.7461	0/1:120:80,40:80:2868:40:1440:-92.2309,0,-222.23	0/1:119:74,45:74:2644:45:1610:-108.285,0,-202.384	0/1:39:26,13:26:932:13:468:-30.4866,0,-72.4587	0/1:200:110,90:110:3897:90:3226:-227.367,0,-290.72	0/1:100:43,56:43:1540:56:1997:-148.814,0,-108.733	0/1:65:49,16:49:1760:16:572:-32.034,0,-139.117	0/1:86:62,24:62:2220:24:860:-51.2969,0,-174.174	0/1:161:95,66:95:3403:66:2350:-161.679,0,-258.018	0/1:58:41,17:41:1468:17:612:-37.3999,0,-114.956	0/1:68:40,28:40:1432:28:1000:-68.8688,0,-108.48	0/1:136:61,75:61:2192:75:2676:-197.713,0,-156.605	0/1:80:37,43:37:1328:43:1535:-112.925,0,-95.7398	0/1:33:25,8:25:892:8:288:-16.2223,0,-70.6657	0/1:110:83,27:83:2972:27:963:-53.1592,0,-234.599	0/1:137:93,44:93:3320:44:1561:-98.1458,0,-257.778	0/0:82:77,5:77:2752:5:180:0,-8.55648,-231.794	0/0:34:32,2:32:1144:2:72:0,-3.43536,-96.4561	0/1:79:53,26:53:1892:26:932:-59.7167,0,-146.777	0/1:26:22,4:22:784:4:144:-5.41466,0,-63.0571	0/1:229:159,70:159:5670:70:2482:-153.259,0,-441.438	0/1:153:95,58:95:3329:58:2046:-136.624,0,-253.766	0/1:60:38,22:38:1356:22:792:-53.1638,0,-104.279	0/1:198:96,102:96:3386:102:3629:-264.501,0,-245.352	0/1:156:131,25:131:4684:25:884:-31.7005,0,-374.761	0/1:116:93,23:93:3314:23:805:-37.4804,0,-263.556	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:1,3:1:36:3:104:-8.19382,0,-2.39415	0/1:2:1,1:1:36:1:36:-2.98099,0,-2.99621	0/1:5:2,3:2:72:3:108:-8.52739,0,-5.33157	0/1:6:3,3:3:108:3:108:-8.22636,0,-8.26899	0/1:248:178,70:178:6384:70:2489:-147.837,0,-499.992	0/1:136:96,40:96:3411:40:1428:-86.682,0,-266.255	0/1:76:42,34:42:1504:34:1220:-86.538,0,-112.776	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:133:92,41:92:3292:41:1472:-91.7831,0,-256.463	0/1:88:33,55:33:1184:55:1960:-148.343,0,-80.3777	0/1:62:52,10:52:1856:10:352:-12.6888,0,-148.656	0/1:97:49,48:49:1756:48:1728:-125.221,0,-129.124	0/1:91:50,41:50:1792:41:1476:-104.768,0,-134.169	0/1:33:27,6:27:960:6:216:-9.7199,0,-76.7823	0/1:59:45,14:45:1612:14:500:-27.3903,0,-127.609	0/1:124:90,34:90:3216:34:1224:-71.5237,0,-252.335	0/1:97:56,41:56:2008:41:1464:-101.903,0,-151.793	0/1:202:145,57:145:5176:57:2048:-122.294,0,-405.118	0/1:140:103,37:103:3677:37:1328:-76.8761,0,-288.988	0/1:14:9,5:9:320:5:172:-11.5352,0,-24.9279	0/1:74:39,35:39:1396:35:1260:-90.917,0,-103.661	0/1:77:46,31:46:1633:31:1116:-75.9949,0,-124.077	0/1:16:14,2:14:500:2:72:-1.99132,0,-40.5197	0/1:88:60,28:60:2133:28:1004:-63.7022,0,-165.742	0/1:23:16,7:16:561:7:252:-15.99,0,-43.8934	0/1:6:4,2:4:144:2:72:-4.67243,0,-11.5074	0/1:14:9,5:9:324:5:180:-12.2234,0,-25.2914	0/1:101:83,18:83:2980:18:648:-27.6105,0,-238.028	0/1:170:124,46:124:4432:46:1641:-95.6682,0,-347.877	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	0/1:275:157,118:157:5604:118:4217:-294.173,0,-421.701	0/1:133:87,46:87:3112:46:1654:-107.532,0,-240.27	0/1:99:80,19:80:2864:19:684:-31.5422,0,-228.195	0/1:57:35,22:35:1244:22:788:-53.4569,0,-95.106	0/1:106:85,21:85:3048:21:756:-36.0874,0,-242.64	0/1:158:85,73:85:3048:73:2613:-185.942,0,-226.984	0/1:31:21,10:21:752:10:356:-22.8824,0,-58.6743	0/1:48:39,9:39:1384:9:324:-14.9316,0,-110.409	0/1:433:104,329:104:3721:329:11800:-921.315,0,-204.744	0/1:23:15,8:15:540:8:288:-19.2013,0,-42.0128	0/1:86:66,20:66:2368:20:712:-37.8302,0,-187.489	0/1:96:51,45:51:1828:45:1620:-115.457,0,-135.902	0/1:117:81,36:81:2885:36:1277:-79.1554,0,-224.665	0/1:136:92,44:92:3258:44:1584:-101.13,0,-252.5	0/1:99:66,33:66:2372:33:1188:-76.9816,0,-183.936	0/1:145:75,70:75:2673:70:2512:-181.247,0,-197.165	0/1:10:6,4:6:216:4:144:-10.0995,0,-16.7802	0/1:100:78,22:78:2788:22:792:-40.6084,0,-221.058	0/1:91:66,25:66:2372:25:892:-52.6634,0,-186.344	0/1:158:94,64:94:3356:64:2296:-157.412,0,-254.695	0/1:143:104,39:104:3728:39:1404:-82.6099,0,-292.673	0/1:70:39,31:39:1396:31:1091:-76.2044,0,-104.867	0/1:103:50,53:50:1788:53:1904:-139.264,0,-130.197	0/1:133:107,26:107:3832:26:936:-43.3055,0,-305.037	0/1:60:46,14:46:1648:14:504:-27.4523,0,-130.539	0/1:87:55,32:55:1972:32:1144:-76.2346,0,-151.565	0/1:84:49,35:49:1748:35:1260:-87.7302,0,-132.318	0/1:37:19,18:19:680:18:648:-46.6505,0,-50.3911	0/1:118:76,42:76:2728:42:1512:-99.8652,0,-210.241	0/1:50:41,9:41:1460:9:324:-14.0434,0,-116.645	0/1:165:81,84:81:2884:84:2997:-217.069,0,-210.127	0/1:133:75,58:75:2692:58:2084:-145.353,0,-202.487
chr08	26067358	.	C	A	46833.6	PASS	AB=0.42389;ABP=379.168;AC=89;AF=0.478495;AN=186;AO=3172;CIGAR=1X;DP=7494;DPB=7494;DPRA=28.3295;EPP=6882.24;EPPR=9383.77;GTI=6;LEN=1;MEANALT=1.02273;MQM=43.4313;MQMR=57.3123;NS=93;NUMALT=1;ODDS=0.957144;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113189;QR=153005;RO=4320;RPL=1;RPP=6882.24;RPPR=9383.77;RPR=3171;RUN=1;SAF=0;SAP=6890.92;SAR=3172;SRF=0;SRP=9383.77;SRR=4320;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:11,13:11:387:13:459:-32.1385,0,-27.9292	0/1:162:108,54:108:3835:54:1944:-119.323,0,-295.821	0/1:137:68,69:68:2404:69:2463:-170.05,0,-174.91	0/1:166:111,55:111:3955:55:1972:-124.028,0,-306.133	0/1:78:43,35:43:1511:35:1256:-87.2104,0,-112.682	0/1:51:24,27:24:860:27:964:-68.8078,0,-62.2895	0/1:128:70,58:70:2481:58:2084:-143.027,0,-184.937	0/1:145:76,69:76:2693:69:2476:-171.258,0,-196.779	0/1:41:35,6:35:1232:6:216:-6.38895,0,-98.2651	0/1:98:53,45:53:1889:45:1594:-112.414,0,-140.643	0/1:18:4,14:4:144:14:500:-39.367,0,-7.89508	0/1:28:19,9:19:676:9:308:-18.3775,0,-52.7146	0/1:26:21,5:21:743:5:180:-8.18442,0,-59.0577	0/1:33:20,13:20:695:13:458:-29.5389,0,-52.9208	0/1:28:18,10:18:640:10:360:-22.5918,0,-49.5005	0/1:23:12,11:12:395:11:396:-25.2166,0,-28.8664	0/1:36:18,18:18:648:18:640:-44.3775,0,-47.6875	0/1:21:12,9:12:424:9:324:-22.2201,0,-31.8926	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9622	0/1:157:112,45:112:3952:45:1620:-96.3779,0,-308.254	0/1:122:57,65:57:1993:65:2305:-163.288,0,-142.744	0/1:124:93,30:93:3279:30:1076:-58.4708,0,-257.952	0/1:78:51,27:51:1807:27:961:-62.2857,0,-138.469	0/1:124:64,60:64:2262:60:2139:-151.179,0,-162.998	0/1:47:24,23:24:847:23:820:-58.2743,0,-62.3271	0/1:235:159,76:159:5593:76:2709:-169.104,0,-429	0/1:144:71,73:71:2509:73:2576:-179.379,0,-182.517	0/1:10:5,5:5:162:5:176:-12.3893,0,-11.4395	0/1:250:128,122:128:4535:122:4343:-308.318,0,-332.433	0/1:159:117,41:117:4177:41:1468:-80.4082,0,-327.774	0/1:159:61,98:61:2167:98:3519:-262.626,0,-145.496	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:5,4:5:180:4:144:-10.2812,0,-13.8419	1/1:3:0,3:0:0:3:108:-9.74595,-0.90309,0	0/1:5:3,2:3:108:2:72:-5.01973,0,-8.5672	.:.:.:.:.:.:.:.	0/1:70:51,19:51:1817:19:684:-40.2785,0,-142.727	0/1:147:111,36:111:3936:36:1288:-69.0904,0,-308.431	0/1:20:11,9:11:396:9:324:-21.3413,0,-29.9521	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:167:68,99:68:2400:99:3549:-256.302,0,-161.093	0/1:20:12,8:12:420:8:288:-17.4898,0,-31.3977	0/1:153:75,78:75:2667:78:2762:-194.96,0,-193.81	0/1:36:17,19:17:596:19:676:-49.5054,0,-43.1303	0/1:41:26,15:26:919:15:540:-36.0209,0,-70.6802	0/1:87:58,29:58:2071:29:1036:-65.7134,0,-160.377	0/1:99:67,32:67:2396:32:1144:-69.9704,0,-184.701	0/1:211:89,122:89:3107:122:4334:-316.263,0,-213.64	0/1:148:67,81:67:2400:81:2912:-210.757,0,-171.434	0/1:80:53,27:53:1904:27:941:-57.4702,0,-147.552	0/1:157:83,74:83:2968:74:2640:-187.481,0,-220.072	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:163:97,66:97:3379:66:2363:-155.925,0,-247.521	0/1:53:26,27:26:909:27:972:-70.9624,0,-66.1679	0/1:7:5,2:5:180:2:72:-4.50611,0,-14.0112	0/1:70:44,26:44:1563:26:924:-59.4452,0,-118.446	0/1:35:22,13:22:788:13:449:-29.7444,0,-60.7014	0/1:5:4,1:4:144:1:36:-2.06828,0,-11.8085	0/1:15:9,6:9:324:6:216:-15.1249,0,-24.9904	0/1:86:38,48:38:1343:48:1709:-123.249,0,-94.7238	0/1:67:48,19:48:1692:19:671:-39.883,0,-131.915	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:212:155,57:155:5512:57:2044:-118.166,0,-432.172	0/1:211:113,98:113:4022:98:3489:-245.128,0,-298.409	0/1:56:43,13:43:1530:13:453:-23.3979,0,-118.916	0/1:89:54,35:54:1871:35:1233:-83.0622,0,-141.833	0/1:139:93,46:93:3307:46:1652:-103.682,0,-255.204	0/1:197:116,81:116:4106:81:2876:-193.039,0,-309.075	0/1:12:8,4:8:280:4:144:-9.41537,0,-21.926	0/1:62:29,33:29:1032:33:1165:-82.9581,0,-74.3996	0/1:81:47,34:47:1636:34:1190:-81.9868,0,-123.019	0/1:17:12,5:12:432:5:176:-10.9066,0,-33.5285	0/1:99:61,38:61:2156:38:1355:-88.066,0,-162.87	0/1:46:24,22:24:843:22:792:-55.1658,0,-61.8226	0/1:139:69,70:69:2460:70:2493:-176.5,0,-179.715	0/1:103:68,35:68:2381:35:1260:-80.7183,0,-183.457	0/1:167:91,76:91:3252:76:2720:-183.124,0,-240.723	0/1:64:46,18:46:1648:18:648:-37.4694,0,-129.093	0/1:6:4,2:4:144:2:72:-4.80714,0,-11.5037	0/1:91:62,29:62:2232:29:1040:-63.9251,0,-173.363	0/1:123:63,60:63:2226:60:2137:-146.227,0,-160.337	0/1:189:90,99:90:3181:99:3539:-256.746,0,-227.699	0/1:77:50,27:50:1770:27:968:-63.1839,0,-134.308	0/1:31:21,10:21:736:10:360:-21.7876,0,-57.2298	0/1:49:30,19:30:1064:19:680:-46.0395,0,-81.3212	0/1:64:38,26:38:1364:26:936:-64.3093,0,-103.724	0/1:44:11,33:11:383:33:1180:-89.0545,0,-21.5492	0/1:27:17,10:17:568:10:360:-21.3849,0,-41.2028	0/1:44:23,21:23:816:21:741:-50.1385,0,-60.4947	0/1:11:6,5:6:212:5:180:-12.8853,0,-16.1106	0/1:17:10,7:10:360:7:252:-17.0954,0,-27.2309	0/1:12:8,4:8:288:4:140:-9.13505,0,-22.3235	0/1:146:69,77:69:2444:77:2759:-194.873,0,-176.037	0/1:48:20,28:20:716:28:995:-74.2326,0,-50.3045
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chr08	26145895	.	A	T	15648.1	PASS	AB=0.51478;ABP=6.41223;AC=21;AF=0.112903;AN=186;AO=935;CIGAR=1X;DP=8639;DPB=8639;DPRA=1.03227;EPP=2033.34;EPPR=16725.5;GTI=1;LEN=1;MEANALT=1.07407;MQM=59.9925;MQMR=59.974;NS=93;NUMALT=1;ODDS=5.27958;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33430;QR=273039;RO=7701;RPL=0;RPP=2033.34;RPPR=16725.5;RPR=935;RUN=1;SAF=935;SAP=2033.34;SAR=0;SRF=7701;SRP=16725.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2305:0:0:0,-19.5669,-207.71	0/0:86:86,0:86:3028:0:0:0,-25.8886,-272.746	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/0:264:264,0:264:9419:0:0:0,-79.4719,-847.668	0/0:58:57,1:57:2010:1:36:0,-13.8615,-177.572	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/0:93:93,0:93:3310:0:0:0,-27.9958,-297.339	0/0:130:130,0:130:4592:0:0:0,-39.1339,-413.254	0/0:128:128,0:128:4561:0:0:0,-38.5318,-410.656	0/0:79:79,0:79:2809:0:0:0,-23.7814,-253.049	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:105:105,0:105:3765:0:0:0,-31.6081,-338.991	0/0:91:91,0:91:3212:0:0:0,-27.3937,-289.298	0/0:53:53,0:53:1851:0:0:0,-15.9546,-166.864	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:79:79,0:79:2772:0:0:0,-23.7814,-249.717	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:152:152,0:152:5381:0:0:0,-45.7566,-484.417	0/0:100:100,0:100:3562:0:0:0,-30.103,-320.786	0/0:97:97,0:97:3458:0:0:0,-29.1999,-311.43	0/0:140:140,0:140:4886:0:0:0,-42.1442,-439.893	0/1:86:55,31:55:1976:31:1100:-73.4206,0,-152.226	0/0:109:109,0:109:3829:0:0:0,-32.8123,-344.804	0/1:258:130,128:130:4600:128:4576:-334.34,0,-336.496	0/0:262:262,0:262:9314:0:0:0,-78.8699,-838.224	0/1:34:16,18:16:557:18:648:-48.4169,0,-40.2205	0/0:287:287,0:287:10144:0:0:0,-86.3956,-912.896	0/0:80:80,0:80:2804:0:0:0,-24.0824,-252.596	0/1:122:42,80:42:1470:80:2855:-220.461,0,-95.8648	0/1:17:12,5:12:417:5:180:-11.4346,0,-32.7427	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:24:17,7:17:593:7:248:-15.4395,0,-46.47	0/0:186:186,0:186:6577:0:0:0,-55.9916,-592.012	0/0:74:74,0:74:2637:0:0:0,-22.2762,-237.576	0/0:56:56,0:56:1966:0:0:0,-16.8577,-177.212	.:.:.:.:.:.:.:.	0/1:91:37,54:37:1298:54:1931:-146.671,0,-89.5332	0/1:33:17,15:17:578:15:540:-38.9438,0,-42.3457	0/0:119:119,0:119:4246:0:0:0,-35.8226,-382.317	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:62:61,0:61:2135:0:0:0,-18.3628,-190.969	0/0:165:165,0:165:5867:0:0:0,-49.6699,-528.14	0/0:125:125,0:125:4374:0:0:0,-37.6287,-393.833	0/1:154:86,68:86:3005:68:2435:-173.046,0,-224.318	0/0:130:130,0:130:4641:0:0:0,-39.1339,-417.852	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/0:181:181,0:181:6458:0:0:0,-54.4864,-581.304	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:161:81,80:81:2889:80:2864:-209.532,0,-211.779	0/0:71:71,0:71:2487:0:0:0,-21.3731,-224.08	0/1:10:9,1:9:309:1:36:-0.587975,0,-25.1304	0/1:187:64,123:64:2296:123:4396:-339.517,0,-150.608	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.062	0/0:101:101,0:101:3594:0:0:0,-30.404,-323.665	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:100:100,0:100:3565:0:0:0,-30.103,-321.057	0/0:124:121,3:121:4272:3:104:0,-27.6249,-374.954	0/1:56:44,12:44:1561:12:409:-20.2778,0,-123.922	0/0:62:62,0:62:2187:0:0:0,-18.6639,-197.091	0/0:172:172,0:172:6070:0:0:0,-51.7772,-546.402	0/0:149:144,5:144:5055:5:180:0,-28.3014,-438.541	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:71:71,0:71:2518:0:0:0,-21.3731,-226.869	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.78	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:130:130,0:130:4645:0:0:0,-39.1339,-418.211	0/1:118:47,71:47:1658:71:2540:-193.33,0,-113.982	0/0:112:112,0:112:3986:0:0:0,-33.7154,-358.929	0/0:217:217,0:217:7701:0:0:0,-65.3235,-693.124	0/0:118:117,1:117:4057:1:36:0,-31.9233,-361.715	0/0:90:90,0:90:3186:0:0:0,-27.0927,-286.963	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:94:94,0:94:3315:0:0:0,-28.2968,-298.567	0/1:136:63,73:63:2215:73:2621:-195.197,0,-158.67	0/0:205:204,1:204:7282:1:36:0,-58.1129,-651.832	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.886	0/0:87:87,0:87:3101:0:0:0,-26.1896,-279.314	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:133:133,0:133:4788:0:0:0,-40.037,-431.073	0/0:39:39,0:39:1339:0:0:0,-11.7402,-120.802	0/1:81:42,39:42:1508:39:1391:-101.105,0,-111.631	0/0:95:95,0:95:3362:0:0:0,-28.5978,-302.796	0/0:50:50,0:50:1747:0:0:0,-15.0515,-157.503	0/1:105:49,56:49:1756:56:2012:-149.745,0,-126.716	0/1:79:34,44:34:1197:44:1576:-118.291,0,-84.1935	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:118:117,1:117:4181:1:36:0,-31.9233,-372.872
chr08	26145934	.	T	C	167782	PASS	AB=0.480067;ABP=9.15651;AC=165;AF=0.887097;AN=186;AO=7656;CIGAR=1X;DP=8600;DPB=8600;DPRA=0;EPP=16610.4;EPPR=2039.85;GTI=1;LEN=1;MEANALT=1.06452;MQM=59.9845;MQMR=59.9915;NS=93;NUMALT=1;ODDS=4.91726;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=269528;QR=33457;RO=938;RPL=7653;RPP=16601.8;RPPR=2039.85;RPR=3;RUN=1;SAF=7655;SAP=16619.1;SAR=1;SRF=938;SRP=2039.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62:0:0:62:2196:-197.903,-18.6639,0	1/1:88:0,88:0:0:88:3108:-279.946,-26.4906,0	1/1:97:0,97:0:0:97:3452:-310.893,-29.1999,0	1/1:263:1,262:1:36:262:9307:-834.004,-75.5726,0	1/1:60:1,59:1:36:59:2080:-183.87,-14.4635,0	1/1:57:0,57:0:0:57:2031:-183.062,-17.1587,0	1/1:97:0,97:0:0:97:3442:-309.218,-29.1999,0	1/1:129:0,129:0:0:129:4514:-406.43,-38.8329,0	1/1:129:0,129:0:0:129:4552:-409.851,-38.8329,0	1/1:78:0,78:0:0:78:2748:-247.563,-23.4803,0	1/1:56:0,56:0:0:56:1966:-177.211,-16.8577,0	1/1:101:0,101:0:0:101:3512:-316.268,-30.404,0	1/1:87:0,87:0:0:87:3037:-273.561,-26.1896,0	1/1:51:0,51:0:0:51:1782:-160.66,-15.3525,0	1/1:71:0,71:0:0:71:2498:-225.071,-21.3731,0	1/1:76:0,76:0:0:76:2679:-241.354,-22.8783,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:35:0,35:0:0:35:1234:-111.363,-10.5361,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:156:0,156:0:0:156:5467:-492.161,-46.9607,0	1/1:98:1,96:1:36:96:3379:-300.729,-25.9615,0	1/1:95:1,94:1:36:94:3320:-295.418,-24.9996,0	1/1:140:0,140:0:0:140:4888:-440.077,-42.1442,0	0/1:81:30,51:30:1076:51:1796:-137.536,0,-72.7694	1/1:112:0,112:0:0:112:3947:-355.425,-33.7154,0	0/1:258:128,130:128:4595:130:4604:-336.859,0,-336.046	1/1:262:0,262:0:0:262:9248:-832.296,-78.8699,0	0/1:32:18,14:18:635:14:492:-34.9794,0,-47.844	1/1:291:0,291:0:0:291:10329:-929.541,-87.5997,0	1/1:80:0,80:0:0:80:2838:-255.659,-24.0824,0	0/1:123:79,44:79:2832:44:1527:-100.693,0,-218.092	0/1:16:5,11:5:171:11:396:-31.1663,0,-10.909	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:10:4,6:4:135:6:216:-16.7802,0,-9.47221	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:25:8,17:8:284:17:608:-47.5263,0,-18.3776	1/1:183:0,183:0:0:183:6432:-578.977,-55.0885,0	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	1/1:55:0,55:0:0:55:1918:-172.893,-16.5567,0	.:.:.:.:.:.:.:.	0/1:97:56,40:56:2001:40:1421:-99.0834,0,-151.261	0/1:32:15,17:15:540:17:600:-44.6962,0,-39.3036	1/1:119:0,119:0:0:119:4203:-378.452,-35.8226,0	1/1:57:0,57:0:0:57:1994:-179.73,-17.1587,0	1/1:52:0,52:0:0:52:1695:-152.552,-15.6536,0	1/1:166:0,165:0:0:165:5865:-527.604,-49.67,0	1/1:123:0,123:0:0:123:4302:-387.357,-37.0267,0	0/1:150:68,82:68:2431:82:2891:-215.271,0,-173.89	1/1:130:0,130:0:0:130:4604:-414.526,-39.1339,0	1/1:60:0,60:0:0:60:2108:-189.987,-18.0618,0	1/1:180:0,180:0:0:180:6416:-577.529,-54.1854,0	0/1:14:6,8:6:216:8:273:-20.6858,0,-15.5761	0/1:163:80,83:80:2867:83:2939:-215.675,0,-209.198	1/1:70:0,70:0:0:70:2448:-220.575,-21.0721,0	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/1:182:118,64:118:4187:64:2207:-144.103,0,-322.22	1/1:51:0,51:0:0:51:1758:-158.497,-15.3525,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:25:0,25:0:0:25:878:-79.3354,-7.52575,0	1/1:74:0,74:0:0:74:2645:-238.296,-22.2762,0	1/1:101:0,101:0:0:101:3541:-318.901,-30.404,0	1/1:6:0,6:0:0:6:197:-18.0513,-1.80618,0	1/1:101:0,101:0:0:101:3496:-314.853,-30.404,0	1/1:124:3,121:3:108:121:4289:-376.114,-27.2526,0	0/1:58:13,45:13:459:45:1586:-125.569,0,-24.1843	1/1:60:0,60:0:0:60:2102:-189.446,-18.0618,0	1/1:176:0,175:0:0:175:6255:-562.834,-52.6803,0	1/1:155:5,150:5:180:150:5277:-458.514,-30.1076,0	1/1:47:0,47:0:0:47:1653:-149.055,-14.1484,0	1/1:67:0,67:0:0:67:2341:-210.947,-20.169,0	1/1:42:0,42:0:0:42:1458:-131.51,-12.6433,0	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	1/1:130:0,130:0:0:130:4587:-412.997,-39.1339,0	0/1:119:74,45:74:2646:45:1564:-105.223,0,-202.563	1/1:110:0,109:0:0:109:3776:-339.682,-32.8123,0	1/1:217:0,217:0:0:217:7722:-695.018,-65.3235,0	1/1:116:0,116:0:0:116:4124:-371.345,-34.9195,0	1/1:89:0,89:0:0:89:3137:-282.555,-26.7917,0	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	1/1:95:0,95:0:0:95:3366:-303.156,-28.5979,0	0/1:137:75,62:75:2671:62:2159:-153.332,0,-199.394	1/1:207:0,207:0:0:207:7256:-653.1,-62.3132,0	1/1:51:0,51:0:0:51:1797:-161.98,-15.3525,0	1/1:87:0,87:0:0:87:3018:-271.85,-26.1896,0	1/1:60:0,59:0:0:59:2016:-181.387,-17.7608,0	1/1:131:0,131:0:0:131:4583:-412.637,-39.4349,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:79:41,38:41:1464:38:1287:-92.3416,0,-108.275	1/1:93:0,93:0:0:93:3258:-293.44,-27.9958,0	1/1:51:0,51:0:0:51:1803:-162.551,-15.3525,0	0/1:103:55,48:55:1945:48:1671:-119.667,0,-144.318	0/1:79:45,34:45:1586:34:1196:-84.164,0,-119.245	1/1:40:0,40:0:0:40:1400:-126.294,-12.0412,0	1/1:118:1,117:1:36:117:4068:-362.712,-31.9233,0
chr08	26145940	.	C	T	14843.2	PASS	AB=0.510808;ABP=4.79392;AC=21;AF=0.112903;AN=186;AO=908;CIGAR=1X;DP=8589;DPB=8589;DPRA=0.943491;EPP=1974.71;EPPR=16664.7;GTI=1;LEN=1;MEANALT=1.04;MQM=60;MQMR=59.9902;NS=93;NUMALT=1;ODDS=6.33256;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32099;QR=267862;RO=7677;RPL=908;RPP=1974.71;RPPR=16656;RPR=0;RUN=1;SAF=908;SAP=1974.71;SAR=0;SRF=7676;SRP=16664.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:66:66,0:66:2244:0:0:0,-19.868,-202.217	0/0:88:88,0:88:3037:0:0:0,-26.4906,-273.559	0/0:98:98,0:98:3434:0:0:0,-29.5009,-309.273	0/0:263:263,0:263:9107:0:0:0,-79.1709,-819.624	0/0:59:58,1:58:2015:1:36:0,-14.1625,-178.023	0/0:58:58,0:58:2036:0:0:0,-17.4597,-183.51	0/0:95:95,0:95:3338:0:0:0,-28.5978,-300.639	0/0:127:127,0:127:4411:0:0:0,-38.2308,-397.165	0/0:125:125,0:125:4399:0:0:0,-37.6287,-396.085	0/0:78:78,0:78:2711:0:0:0,-23.4803,-244.233	0/0:56:56,0:56:1930:0:0:0,-16.8577,-173.973	0/0:102:102,0:102:3468:0:0:0,-30.7051,-312.282	0/0:88:88,0:88:3066:0:0:0,-26.4906,-276.171	0/0:49:49,0:49:1693:0:0:0,-14.7505,-152.651	0/0:68:68,0:68:2415:0:0:0,-20.47,-217.606	0/0:76:76,0:76:2617:0:0:0,-22.8783,-235.776	0/0:20:20,0:20:676:0:0:0,-6.0206,-61.1541	0/0:34:34,0:34:1163:0:0:0,-10.235,-104.967	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:153:153,0:153:5354:0:0:0,-46.0576,-481.998	0/0:98:98,0:98:3427:0:0:0,-29.5009,-308.645	0/0:96:96,0:96:3352:0:0:0,-28.8989,-301.899	0/0:141:141,0:141:4958:0:0:0,-42.4452,-446.373	0/1:80:51,29:51:1776:29:1012:-67.3061,0,-136.038	0/0:110:110,0:110:3870:0:0:0,-33.1133,-348.498	0/1:252:131,121:131:4624:121:4274:-308.978,0,-340.463	0/0:261:261,0:261:9161:0:0:0,-78.5688,-824.48	0/1:31:14,17:14:475:17:608:-45.7201,0,-33.7415	0/0:287:287,0:287:10111:0:0:0,-86.3956,-909.933	0/0:80:80,0:80:2826:0:0:0,-24.0824,-254.577	0/1:121:44,77:44:1550:77:2735:-209.966,0,-103.366	0/1:16:11,5:11:369:5:171:-10.909,0,-28.7161	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:9:6,3:6:204:3:108:-7.3659,0,-15.9841	0/0:11:10,0:10:360:0:0:0,-3.0103,-32.3845	0/1:24:17,7:17:603:7:252:-15.8042,0,-47.3748	0/0:181:181,0:181:6251:0:0:0,-54.4864,-562.699	0/0:75:75,0:75:2614:0:0:0,-22.5772,-235.508	0/0:57:57,0:57:1969:0:0:0,-17.1587,-177.479	.:.:.:.:.:.:.:.	0/1:97:41,55:41:1468:55:1933:-145.142,0,-103.314	0/1:33:18,15:18:632:15:532:-38.2791,0,-47.2728	0/0:118:118,0:118:4111:0:0:0,-35.5215,-370.178	0/0:58:58,0:58:2009:0:0:0,-17.4597,-181.08	0/0:63:63,0:63:2134:0:0:0,-18.9649,-192.299	0/0:169:169,0:169:5911:0:0:0,-50.8741,-532.106	0/0:124:124,0:124:4383:0:0:0,-37.3277,-394.646	0/1:148:82,66:82:2877:66:2351:-167.296,0,-214.613	0/0:130:130,0:130:4609:0:0:0,-39.1339,-414.974	0/0:60:60,0:60:2096:0:0:0,-18.0618,-188.908	0/0:182:182,0:182:6362:0:0:0,-54.7875,-572.68	0/1:16:9,7:9:320:7:248:-17.8477,0,-24.3259	0/1:156:78,78:78:2766:78:2745:-200.329,0,-202.221	0/0:68:68,0:68:2362:0:0:0,-20.47,-212.835	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/1:182:65,117:65:2214:117:4123:-316.469,0,-144.729	0/0:50:50,0:50:1649:0:0:0,-15.0515,-148.682	0/0:9:8,0:8:288:0:0:0,-2.40824,-25.9076	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:76:76,0:76:2664:0:0:0,-22.8783,-240.004	0/0:102:102,0:102:3559:0:0:0,-30.7051,-320.523	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:100:100,0:100:3495:0:0:0,-30.103,-314.76	0/0:123:120,3:120:4256:3:108:0,-26.9515,-373.145	0/1:58:46,12:46:1588:12:428:-21.3991,0,-125.744	0/0:63:63,0:63:2198:0:0:0,-18.9649,-198.083	0/0:174:174,0:174:6119:0:0:0,-52.3792,-550.813	0/0:154:149,5:149:5248:5:180:0,-29.8066,-455.905	0/0:47:47,0:47:1582:0:0:0,-14.1484,-142.662	0/0:69:69,0:69:2383:0:0:0,-20.7711,-214.723	0/0:45:45,0:45:1550:0:0:0,-13.5463,-139.787	0/1:14:8,6:8:276:6:193:-13.4712,0,-20.9608	0/0:130:130,0:130:4539:0:0:0,-39.1339,-408.684	0/1:119:46,73:46:1613:73:2620:-200.225,0,-109.632	0/0:111:111,0:111:3843:0:0:0,-33.4143,-346.068	0/0:217:217,0:217:7597:0:0:0,-65.3235,-683.778	0/0:119:119,0:119:4237:0:0:0,-35.8226,-381.51	0/0:90:90,0:90:3129:0:0:0,-27.0927,-281.836	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:96:96,0:96:3391:0:0:0,-28.8989,-305.408	0/1:133:62,71:62:2157:71:2505:-185.664,0,-154.355	0/0:200:200,0:200:7051:0:0:0,-60.206,-634.655	0/0:51:51,0:51:1750:0:0:0,-15.3525,-157.765	0/0:86:85,0:85:2850:0:0:0,-25.5875,-256.518	0/0:61:61,0:61:2118:0:0:0,-18.3628,-190.886	0/0:134:134,0:134:4632:0:0:0,-40.338,-417.048	0/0:38:38,0:38:1336:0:0:0,-11.4391,-120.537	0/1:78:39,39:39:1302:39:1366:-99.7566,0,-93.9897	0/0:97:97,0:97:3313:0:0:0,-29.1999,-298.392	0/0:52:52,0:52:1794:0:0:0,-15.6536,-161.736	0/1:104:50,54:50:1749:54:1915:-141.32,0,-126.385	0/1:77:32,45:32:1117:45:1584:-119.668,0,-77.6561	0/0:37:37,0:37:1308:0:0:0,-11.1381,-118.022	0/0:118:117,1:117:4075:1:36:0,-31.9233,-363.346
chr08	26145985	.	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chr08	26146001	.	G	A	151058	PASS	AB=0.481957;ABP=7.63348;AC=170;AF=0.904255;AN=188;AO=7209;CIGAR=1X;DP=8083;DPB=8083;DPRA=0;EPP=15657.2;EPPR=1892.19;GTI=0;LEN=1;MEANALT=1.04255;MQM=40.1928;MQMR=59.4667;NS=94;NUMALT=1;ODDS=1.97211;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258101;QR=31088;RO=870;RPL=7209;RPP=15657.2;RPPR=1892.19;RPR=0;RUN=1;SAF=0;SAP=15657.2;SAR=7209;SRF=0;SRP=1892.19;SRR=870;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1440:-121.544,-12.0412,0	1/1:90:0,90:0:0:90:3197:-265.185,-27.0927,0	1/1:75:0,74:0:0:74:2647:-222.453,-22.2762,0	1/1:148:0,148:0:0:148:5286:-461.414,-44.5524,0	1/1:34:0,34:0:0:34:1220:-105.026,-10.235,0	1/1:30:0,30:0:0:30:1061:-88.539,-9.0309,0	1/1:134:0,134:0:0:134:4808:-416.406,-40.338,0	1/1:172:0,172:0:0:172:6147:-516.99,-51.7772,0	1/1:84:0,84:0:0:84:3016:-251.209,-25.2865,0	1/1:94:0,94:0:0:94:3336:-288.818,-28.2968,0	1/1:105:0,105:0:0:105:3751:-325.957,-31.6082,0	1/1:81:0,81:0:0:81:2899:-241.935,-24.3834,0	1/1:94:0,94:0:0:94:3368:-283.91,-28.2968,0	1/1:127:1,126:1:36:126:4514:-380.828,-34.6376,0	1/1:72:0,72:0:0:72:2588:-222.211,-21.6742,0	1/1:57:0,57:0:0:57:2048:-175.019,-17.1587,0	1/1:100:0,100:0:0:100:3582:-297.133,-30.103,0	1/1:108:0,108:0:0:108:3880:-327.436,-32.5112,0	1/1:38:0,38:0:0:38:1364:-115.071,-11.4391,0	1/1:57:0,57:0:0:57:2044:-178.993,-17.1587,0	1/1:113:0,113:0:0:113:4024:-342.8,-34.0164,0	1/1:52:0,52:0:0:52:1868:-164.124,-15.6536,0	1/1:80:1,79:1:36:79:2836:-241.375,-20.4841,0	0/1:143:56,87:56:2000:87:3108:-223.861,0,-137.213	1/1:58:0,58:0:0:58:2070:-176.52,-17.4597,0	0/1:318:176,142:176:6303:142:5104:-350.461,0,-470.887	1/1:183:0,183:0:0:183:6556:-559.799,-55.0885,0	0/1:48:22,26:22:783:26:936:-66.7311,0,-56.3145	1/1:127:0,127:0:0:127:4526:-398.028,-38.2308,0	1/1:113:6,107:6:208:107:3828:-309.138,-14.9573,0	0/1:96:35,61:35:1252:61:2171:-160.39,0,-84.0806	0/1:4:1,3:1:36:3:108:-8.46845,0,-2.39415	1/1:7:0,7:0:0:7:252:-22.1087,-2.10721,0	1/1:3:0,3:0:0:3:108:-9.48528,-0.90309,0	1/1:4:0,4:0:0:4:144:-12.5341,-1.20412,0	1/1:20:1,19:1:36:19:680:-54.2502,-2.42233,0	1/1:232:1,231:1:36:231:8291:-722.969,-66.2407,0	1/1:85:0,85:0:0:85:3052:-262.578,-25.5876,0	1/1:104:0,104:0:0:104:3744:-313.515,-31.3071,0	1/1:4:0,4:0:0:4:144:-12.7816,-1.20412,0	0/1:116:67,49:67:2396:49:1740:-113.679,0,-180.758	0/1:39:19,20:19:676:20:716:-50.6235,0,-49.4232	1/1:92:0,92:0:0:92:3300:-283.547,-27.6948,0	1/1:90:0,90:0:0:90:3228:-281,-27.0927,0	1/1:83:0,83:0:0:83:2969:-258.591,-24.9855,0	1/1:94:0,94:0:0:94:3358:-294.113,-28.2968,0	1/1:93:0,93:0:0:93:3340:-279.227,-27.9958,0	0/1:149:92,57:92:3296:57:2040:-132.611,0,-251.994	1/1:91:1,90:1:36:90:3228:-277.604,-23.7955,0	1/1:154:1,153:1:36:153:5443:-469.832,-42.7654,0	1/1:130:0,129:0:0:129:4628:-405.384,-38.8329,0	1/1:14:0,14:0:0:14:504:-44.3423,-4.21442,0	0/1:82:33,49:33:1184:49:1760:-121.374,0,-82.1451	1/1:49:1,48:1:36:48:1709:-144.815,-11.1522,0	0/1:16:9,7:9:324:7:252:-16.8642,0,-24.6894	0/1:78:47,31:47:1680:31:1115:-70.5762,0,-127.632	1/1:49:0,49:0:0:49:1760:-151.501,-14.7505,0	1/1:9:0,9:0:0:9:324:-28.9658,-2.70927,0	1/1:16:0,16:0:0:16:576:-51.2738,-4.81648,0	1/1:68:0,68:0:0:68:2448:-211.525,-20.47,0	1/1:128:0,128:0:0:128:4592:-394.789,-38.5318,0	1/1:11:0,11:0:0:11:396:-33.1025,-3.31133,0	1/1:138:0,138:0:0:138:4944:-434.133,-41.5421,0	1/1:207:0,207:0:0:207:7393:-637.414,-62.3132,0	0/1:96:44,52:44:1576:52:1872:-132.329,0,-113.098	1/1:62:0,62:0:0:62:2194:-191.733,-18.6639,0	1/1:93:6,87:6:212:87:3120:-251.664,-8.66048,0	1/1:46:2,44:2:72:44:1563:-128.852,-7.01066,0	1/1:33:0,33:0:0:33:1184:-101.4,-9.93399,0	1/1:66:0,66:0:0:66:2354:-198.029,-19.868,0	1/1:125:0,125:0:0:125:4484:-393.744,-37.6288,0	0/1:29:20,9:20:712:9:316:-18.8187,0,-55.6758	1/1:57:0,57:0:0:57:2048:-172.277,-17.1587,0	0/1:89:57,32:57:2016:32:1152:-70.7116,0,-154.814	1/1:216:0,216:0:0:216:7748:-666.667,-65.0225,0	1/1:100:0,100:0:0:100:3584:-312.412,-30.103,0	1/1:73:0,72:0:0:72:2576:-215.92,-21.6742,0	1/1:84:1,83:1:36:83:2979:-247.371,-21.6882,0	1/1:3:0,3:0:0:3:108:-9.48528,-0.90309,0	1/1:58:0,58:0:0:58:2084:-179.427,-17.4597,0	0/1:63:36,27:36:1292:27:964:-62.319,0,-97.6134	1/1:159:1,158:1:36:158:5668:-488.932,-44.2655,0	1/1:105:0,105:0:0:105:3754:-325.037,-31.6082,0	1/1:77:0,77:0:0:77:2755:-239.926,-23.1793,0	1/1:105:0,104:0:0:104:3715:-322.985,-31.3071,0	1/1:201:0,201:0:0:201:7189:-626.141,-60.507,0	1/1:54:0,54:0:0:54:1940:-162.266,-16.2556,0	0/1:75:33,42:33:1180:42:1500:-104.25,0,-83.8991	1/1:60:0,60:0:0:60:2152:-181.468,-18.0618,0	1/1:67:0,67:0:0:67:2391:-203.042,-20.169,0	0/1:106:39,67:39:1396:67:2395:-173.467,0,-94.0207	0/1:88:61,27:61:2170:27:963:-57.862,0,-169.067	1/1:38:0,38:0:0:38:1364:-118.634,-11.4391,0	1/1:125:0,125:0:0:125:4476:-390.609,-37.6288,0
chr08	26150791	.	GAAT	GAAC,AAAC	116509	PASS	AB=0.473447,0.529575;ABP=9.81399,11.2306;AC=166,19;AF=0.882979,0.101064;AN=188;AO=4644,586;CIGAR=3M1X,1X2M1X;DP=5261;DPB=5261;DPRA=0,1.19412;EPP=10087.3,1275.49;EPPR=20.3821;GTI=3;LEN=1,4;MEANALT=1.54255,2.32143;MQM=59.9264,58.9573;MQMR=60;NS=94;NUMALT=2;ODDS=1.9742;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165870,20485;QR=285;RO=8;RPL=4644,586;RPP=10087.3,1275.49;RPPR=20.3821;RPR=0,0;RUN=1,1;SAF=4644,586;SAP=10087.3,1275.49;SAR=0,0;SRF=8;SRP=20.3821;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40,0:0:0:40,0:1436,0:-129.538,-12.0412,0,-129.538,-12.0412,-129.538	1/1:67:0,67,0:0:0:67,0:2404,0:-216.616,-20.169,0,-216.616,-20.169,-216.616	1/1:70:0,70,0:0:0:70,0:2491,0:-224.441,-21.0721,0,-224.441,-21.0721,-224.441	1/1:92:0,91,0:0:0:91,0:3233,0:-290.783,-27.3937,0,-290.783,-27.3937,-290.783	1/1:36:0,36,0:0:0:36,0:1264,0:-114.058,-10.8371,0,-114.058,-10.8371,-114.058	1/1:22:0,22,0:0:0:22,0:792,0:-71.6041,-6.62266,0,-71.6041,-6.62266,-71.6041	1/1:73:0,72,0:0:0:72,0:2575,0:-231.639,-21.6742,0,-231.639,-21.6742,-231.639	1/1:74:0,74,0:0:0:74,0:2660,0:-239.645,-22.2762,0,-239.645,-22.2762,-239.645	1/1:56:0,55,1:0:0:55,1:1946,36:-175.06,-16.5567,0,-172.167,-13.3092,-171.866	1/1:76:0,76,0:0:0:76,0:2720,0:-245.035,-22.8783,0,-245.035,-22.8783,-245.035	1/1:38:0,37,0:0:0:37,0:1328,0:-119.482,-11.1381,0,-119.482,-11.1381,-119.482	1/1:42:0,42,0:0:0:42,0:1495,0:-134.833,-12.6433,0,-134.833,-12.6433,-134.833	1/1:47:0,47,0:0:0:47,0:1692,0:-152.567,-14.1484,0,-152.567,-14.1484,-152.567	1/1:42:0,41,0:0:0:41,0:1450,0:-130.435,-12.3422,0,-130.435,-12.3422,-130.435	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	1/1:44:0,44,0:0:0:44,0:1567,0:-141.321,-13.2453,0,-141.321,-13.2453,-141.321	1/1:32:0,32,0:0:0:32,0:1152,0:-103.499,-9.63296,0,-103.499,-9.63296,-103.499	1/1:25:0,23,0:0:0:23,0:824,0:-74.1727,-6.92369,0,-74.1727,-6.92369,-74.1727	1/1:94:0,92,1:0:0:92,1:3293,36:-296.27,-27.6948,0,-293.333,-24.7124,-293.032	1/1:99:0,99,0:0:0:99,0:3531,0:-317.997,-29.802,0,-317.997,-29.802,-317.997	1/1:65:0,65,0:0:0:65,0:2339,0:-210.769,-19.567,0,-210.769,-19.567,-210.769	1/1:50:0,50,0:0:0:50,0:1787,0:-161.112,-15.0515,0,-161.112,-15.0515,-161.112	1/2:90:0,52,37:0:0:52,37:1872,1285:-257.307,-104.552,-88.8981,-152.893,0,-141.755	1/1:47:2,45,0:2:69:45,0:1616,0:-139.177,-7.59587,0,-139.779,-13.5464,-145.384	1/2:129:0,75,53:0:0:75,53:2653,1843:-365.907,-149.824,-127.246,-216.074,0,-200.12	1/1:98:0,97,0:0:0:97,0:3418,0:-307.459,-29.1999,0,-307.459,-29.1999,-307.459	1/2:17:0,7,10:0:0:7,10:248,357:-49.6637,-29.462,-27.3548,-20.557,0,-17.5467	1/1:108:0,108,0:0:0:108,0:3852,0:-346.876,-32.5112,0,-346.876,-32.5112,-346.876	1/1:60:0,58,2:0:0:58,2:2076,70:-186.759,-17.4597,0,-181.064,-11.4145,-180.462	1/2:85:0,48,37:0:0:48,37:1713,1313:-246.981,-107.333,-92.8832,-140.004,0,-128.866	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:9:0,9,0:0:0:9,0:324,0:-29.4605,-2.70927,0,-29.4605,-2.70927,-29.4605	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	0/1:14:2,12,0:2:72:12,0:432,0:-35.0068,0,-2.6223,-35.6088,-6.23466,-41.4837	1/2:4:0,2,2:0:0:2,2:72,68:-11.7405,-5.85565,-5.25359,-6.23466,0,-5.6326	1/1:109:0,107,0:0:0:107,0:3835,0:-345.015,-32.2102,0,-345.015,-32.2102,-345.015	1/1:120:0,119,1:0:0:119,1:4280,36:-384.998,-35.8226,0,-382.061,-32.5253,-381.76	1/1:46:0,46,0:0:0:46,0:1617,0:-145.816,-13.8474,0,-145.816,-13.8474,-145.816	0/1:4:1,3,0:1:36:3,0:108,0:-8.87105,0,-2.39415,-9.17208,-3.29724,-12.1095	1/2:103:0,51,51:0:0:51,51:1828,1778:-293.426,-144.331,-128.978,-149.089,0,-133.736	1/2:30:0,11,19:0:0:11,19:396,674:-87.5309,-55.2173,-51.906,-32.6714,0,-26.9518	1/1:75:0,75,0:0:0:75,0:2679,0:-241.353,-22.5773,0,-241.353,-22.5773,-241.353	1/1:33:0,33,0:0:0:33,0:1175,0:-106.057,-9.93399,0,-106.057,-9.93399,-106.057	1/1:29:0,28,0:0:0:28,0:985,0:-88.602,-8.42884,0,-88.602,-8.42884,-88.602	1/1:73:0,73,0:0:0:73,0:2620,0:-236.047,-21.9752,0,-236.047,-21.9752,-236.047	1/1:53:0,53,0:0:0:53,0:1908,0:-171.993,-15.9546,0,-171.993,-15.9546,-171.993	1/2:108:0,44,63:0:0:44,63:1575,2234:-310.416,-181.985,-168.74,-128.428,0,-109.463	1/1:63:0,63,0:0:0:63,0:2252,0:-202.943,-18.9649,0,-202.943,-18.9649,-202.943	1/1:72:0,72,0:0:0:72,0:2571,0:-231.553,-21.6742,0,-231.553,-21.6742,-231.553	1/1:112:0,112,0:0:0:112,0:4019,0:-361.407,-33.7154,0,-361.407,-33.7154,-361.407	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:117:0,49,68:0:0:49,68:1742,2351:-333.183,-191.232,-176.481,-142.302,0,-121.832	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/2:15:0,11,4:0:0:11,4:388,127:-42.159,-10.5397,-7.22838,-31.946,0,-30.7419	1/2:54:0,18,36:0:0:18,36:640,1244:-153.537,-101.378,-95.9595,-52.5108,0,-41.6737	1/1:59:0,59,0:0:0:59,0:2105,0:-189.717,-17.7608,0,-189.717,-17.7608,-189.717	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206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chr08	26153383	.	A	G	116162	PASS	AB=0.42338;ABP=87.1979;AC=167;AF=0.888298;AN=188;AO=5275;CIGAR=1X;DP=6239;DPB=6239;DPRA=0;EPP=11293.1;EPPR=2008.01;GTI=4;LEN=1;MEANALT=1.05319;MQM=56.6053;MQMR=60;NS=94;NUMALT=1;ODDS=0.901561;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188364;QR=34325;RO=959;RPL=5256;RPP=11293.1;RPPR=2008.01;RPR=19;RUN=1;SAF=0;SAP=11457.5;SAR=5275;SRF=0;SRP=2085.45;SRR=959;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:98:0,97:0:0:97:3467:-311.877,-29.1999,0	1/1:98:0,98:0:0:98:3516:-316.618,-29.5009,0	1/1:118:0,117:0:0:117:4191:-376.961,-35.2205,0	1/1:40:0,40:0:0:40:1418:-127.915,-12.0412,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:127:0,127:0:0:127:4527:-407.121,-38.2308,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:54:0,54:0:0:54:1924:-173.279,-16.2556,0	1/1:16:0,16:0:0:16:563:-50.9992,-4.81648,0	1/1:37:0,37:0:0:37:1332:-120.16,-11.1381,0	1/1:38:0,38:0:0:38:1349:-121.709,-11.4391,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:28:0,28:0:0:28:999:-90.2251,-8.42884,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:134:0,134:0:0:134:4775:-429.907,-40.338,0	1/1:82:0,82:0:0:82:2932:-264.083,-24.6845,0	1/1:75:0,75:0:0:75:2669:-229.786,-22.5773,0	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	0/1:104:60,44:60:2139:44:1584:-111.544,0,-161.47	1/1:44:0,44:0:0:44:1550:-139.776,-13.2453,0	0/1:378:238,140:238:8522:140:4991:-315.3,0,-653.188	1/1:106:0,106:0:0:106:3785:-340.847,-31.9092,0	0/1:25:9,16:9:320:16:568:-43.9261,0,-21.6166	1/1:157:0,157:0:0:157:5602:-482.116,-47.2617,0	1/1:147:6,141:6:212:141:5044:-434.669,-24.8266,0	0/1:116:75,41:75:2692:41:1464:-97.1366,0,-207.605	0/1:7:4,3:4:144:3:104:-7.53664,0,-11.2064	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:118:0,118:0:0:118:4223:-363.476,-35.5215,0	1/1:177:0,177:0:0:177:6293:-566.454,-53.2823,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:138:74,64:74:2652:64:2300:-165.719,0,-197.384	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:93:0,93:0:0:93:3326:-299.558,-27.9958,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:33:0,33:0:0:33:1186:-107.049,-9.93399,0	1/1:93:0,93:0:0:93:3332:-285.213,-27.9958,0	1/1:104:0,103:0:0:103:3680:-331.024,-31.0061,0	0/1:236:130,106:130:4659:106:3792:-270.436,0,-348.427	1/1:108:0,108:0:0:108:3859:-347.505,-32.5112,0	1/1:95:0,94:0:0:94:3368:-302.976,-28.2968,0	1/1:75:0,75:0:0:75:2690:-231.522,-22.5773,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:125:72,53:72:2576:53:1895:-133.199,0,-194.461	1/1:14:0,14:0:0:14:504:-43.8848,-4.21442,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:110:55,55:55:1963:55:1967:-144.191,0,-143.831	1/1:26:0,26:0:0:26:928:-83.8301,-7.82678,0	1/1:3:0,3:0:0:3:108:-9.58608,-0.90309,0	1/1:15:0,15:0:0:15:536:-45.6027,-4.51545,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:68:0,68:0:0:68:2428:-218.776,-20.47,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:153:0,153:0:0:153:5468:-470.043,-46.0576,0	1/1:150:0,150:0:0:150:5372:-483.612,-45.1545,0	0/1:67:43,24:43:1540:24:848:-56.4706,0,-118.724	1/1:68:0,68:0:0:68:2334:-210.309,-20.47,0	1/1:126:0,126:0:0:126:4499:-405.079,-37.9298,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:36:0,36:0:0:36:1283:-115.773,-10.8371,0	1/1:82:0,82:0:0:82:2921:-250.924,-24.6845,0	0/1:39:16,23:16:572:23:820:-62.3823,0,-40.0733	1/1:67:0,67:0:0:67:2404:-216.615,-20.169,0	0/1:41:24,17:24:864:17:612:-43.0712,0,-65.7403	1/1:75:0,75:0:0:75:2676:-241.086,-22.5773,0	1/1:91:0,91:0:0:91:3246:-292.334,-27.3937,0	1/1:113:0,112:0:0:112:3980:-358.031,-33.7154,0	1/1:66:0,66:0:0:66:2355:-212.208,-19.868,0	1/1:17:0,17:0:0:17:588:-53.2431,-5.11751,0	1/1:90:0,90:0:0:90:3236:-291.461,-27.0927,0	0/1:100:57,43:57:2043:43:1540:-108.79,0,-154.038	1/1:119:0,119:0:0:119:4243:-380.601,-35.8226,0	1/1:84:0,84:0:0:84:3000:-270.232,-25.2865,0	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:53:0,53:0:0:53:1889:-170.283,-15.9546,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:47:25,22:25:887:22:792:-57.4573,0,-65.9997	1/1:50:0,50:0:0:50:1784:-160.342,-15.0515,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:37:12,25:12:432:25:879:-68.2749,0,-28.0831	0/1:39:29,10:29:1032:10:351:-20.1865,0,-81.4533	1/1:37:0,37:0:0:37:1312:-118.375,-11.1381,0	1/1:53:1,52:1:36:52:1860:-164.017,-12.3563,0
chr08	26153397	.	C	T	112067	PASS	AB=0.421277;ABP=91.5602;AC=167;AF=0.888298;AN=188;AO=5198;CIGAR=1X;DP=6169;DPB=6169;DPRA=0;EPP=11290.3;EPPR=2102.82;GTI=4;LEN=1;MEANALT=1.04255;MQM=56.571;MQMR=59.9835;NS=94;NUMALT=1;ODDS=1.01027;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184394;QR=34353;RO=967;RPL=5198;RPP=11290.3;RPPR=2102.82;RPR=0;RUN=1;SAF=0;SAP=11290.3;SAR=5198;SRF=0;SRP=2102.82;SRR=967;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	1/1:97:0,97:0:0:97:3411:-307.199,-29.1999,0	1/1:95:0,95:0:0:95:3351:-301.792,-28.5979,0	1/1:115:0,115:0:0:115:4106:-369.672,-34.6185,0	1/1:40:0,40:0:0:40:1432:-129.174,-12.0412,0	1/1:34:0,34:0:0:34:1205:-108.754,-10.235,0	1/1:62:0,62:0:0:62:2170:-195.564,-18.6639,0	1/1:124:0,124:0:0:124:4395:-395.67,-37.3277,0	1/1:43:0,43:0:0:43:1487:-134.117,-12.9443,0	1/1:54:0,54:0:0:54:1878:-169.218,-16.2556,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:38:0,38:0:0:38:1364:-123.038,-11.4391,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:40:0,40:0:0:40:1413:-127.465,-12.0412,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:20:0,20:0:0:20:701:-63.4117,-6.0206,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:27:1,26:1:36:26:932:-80.6006,-4.52954,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:135:0,135:0:0:135:4817:-433.663,-40.6391,0	1/1:80:1,79:1:36:79:2809:-249.4,-20.4841,0	1/1:74:0,74:0:0:74:2625:-225.835,-22.2762,0	1/1:64:0,64:0:0:64:2243:-202.129,-19.2659,0	0/1:103:59,44:59:2109:44:1530:-106.982,0,-159.071	1/1:44:0,44:0:0:44:1576:-142.118,-13.2453,0	0/1:369:230,139:230:8156:139:4908:-311.613,0,-622.978	1/1:102:0,102:0:0:102:3633:-327.175,-30.7051,0	0/1:23:7,16:7:248:16:576:-45.2513,0,-15.7405	1/1:156:0,155:0:0:155:5514:-474.652,-46.6597,0	1/1:144:7,137:7:237:137:4858:-415.711,-21.6893,0	0/1:114:74,40:74:2622:40:1416:-93.4199,0,-201.908	0/1:8:4,4:4:144:4:140:-9.18132,0,-10.9054	1/1:6:0,5:0:0:5:176:-15.8265,-1.50515,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:116:1,115:1:36:115:4105:-349.682,-31.3303,0	1/1:175:0,175:0:0:175:6117:-550.588,-52.6803,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:134:75,59:75:2696:59:2108:-149.651,0,-202.546	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	1/1:90:0,89:0:0:89:3172:-285.346,-26.7917,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:92:0,92:0:0:92:3270:-280.689,-27.6948,0	1/1:105:0,104:0:0:104:3694:-332.283,-31.3071,0	0/1:243:133,110:133:4673:110:3910:-278.942,0,-347.581	1/1:104:2,102:2:72:102:3637:-320.697,-24.4704,0	1/1:96:0,96:0:0:96:3417:-307.744,-28.8989,0	1/1:76:0,76:0:0:76:2697:-232.286,-22.8783,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:125:74,51:74:2652:51:1815:-126.002,0,-201.297	1/1:14:0,14:0:0:14:496:-43.1774,-4.21442,0	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/1:110:56,54:56:1988:54:1934:-141.223,0,-146.081	1/1:26:0,26:0:0:26:924:-83.4695,-7.82678,0	1/1:3:0,3:0:0:3:108:-9.58608,-0.90309,0	1/1:15:0,15:0:0:15:520:-44.5208,-4.51545,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:68:1,67:1:32:67:2389:-212.066,-17.2707,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:154:1,153:1:36:153:5426:-463.311,-42.7694,0	1/1:146:0,146:0:0:146:5160:-464.541,-43.9504,0	0/1:68:44,24:44:1565:24:845:-55.8971,0,-120.67	1/1:68:0,68:0:0:68:2368:-213.356,-20.47,0	1/1:125:0,125:0:0:125:4461:-401.66,-37.6288,0	1/1:59:0,59:0:0:59:2086:-188.007,-17.7608,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:82:0,82:0:0:82:2917:-250.274,-24.6845,0	0/1:39:16,23:16:546:23:824:-62.7431,0,-37.7191	1/1:69:0,69:0:0:69:2438:-219.66,-20.7711,0	0/1:42:25,17:25:896:17:612:-42.7702,0,-68.3171	1/1:75:0,75:0:0:75:2673:-240.814,-22.5773,0	1/1:88:0,88:0:0:88:3133:-282.142,-26.4906,0	1/1:111:0,111:0:0:111:3882:-349.572,-33.4143,0	1/1:66:0,66:0:0:66:2341:-210.948,-19.868,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	1/1:90:0,90:0:0:90:3178:-286.244,-27.0927,0	0/1:103:59,44:59:2101:44:1550:-108.782,0,-158.352	1/1:114:0,114:0:0:114:4037:-362.069,-34.3174,0	1/1:82:0,82:0:0:82:2932:-264.115,-24.6845,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:36:0,36:0:0:36:1273:-114.849,-10.8371,0	1/1:49:0,49:0:0:49:1760:-158.679,-14.7505,0	1/1:31:0,31:0:0:31:1112:-100.369,-9.33193,0	0/1:47:25,22:25:900:22:788:-57.0964,0,-67.1726	1/1:49:0,49:0:0:49:1721:-154.815,-14.7505,0	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	0/1:36:13,23:13:464:23:820:-63.2854,0,-31.2604	0/1:40:30,10:30:1072:10:356:-20.34,0,-84.7513	1/1:36:0,36:0:0:36:1292:-116.566,-10.8371,0	1/1:53:1,52:1:36:52:1852:-163.298,-12.3563,0
chr08	26153545	.	C	T	9887.17	PASS	AB=0.45407;ABP=27.5452;AC=20;AF=0.108696;AN=184;AO=626;CIGAR=1X;DP=7469;DPB=7469;DPRA=1.17588;EPP=1345.04;EPPR=14559.9;GTI=3;LEN=1;MEANALT=1.11111;MQM=59.992;MQMR=59.995;NS=92;NUMALT=1;ODDS=1.769;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=22427;QR=244793;RO=6839;RPL=624;RPP=1345.04;RPPR=14559.9;RPR=2;RUN=1;SAF=0;SAP=1362.35;SAR=626;SRF=0;SRP=14853.7;SRR=6839;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:26,0:26:928:0:0:0,-7.82678,-83.4704	0/0:156:156,0:156:5561:0:0:0,-46.9607,-500.612	0/0:101:101,0:101:3601:0:0:0,-30.404,-324.296	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.995	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:162:161,1:161:5772:1:36:0,-45.1686,-515.996	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.554	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:135:135,0:135:4835:0:0:0,-40.639,-435.303	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:138:138,0:138:4899:0:0:0,-41.5421,-441.061	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/1:73:41,32:41:1449:32:1142:-81.1139,0,-108.729	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.194	0/1:236:138,97:138:4928:97:3469:-241.318,0,-372.57	0/0:193:193,0:193:6920:0:0:0,-58.0988,-622.865	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	0/0:231:231,0:231:8239:0:0:0,-69.5379,-741.52	0/0:152:145,7:145:5189:7:252:0,-22.7276,-444.119	0/1:111:67,44:67:2381:44:1561:-107.365,0,-181.132	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:159:159,0:159:5697:0:0:0,-47.8638,-512.846	0/0:184:184,0:184:6573:0:0:0,-55.3895,-591.647	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	.:.:.:.:.:.:.:.	0/1:105:58,47:58:2084:47:1684:-120.239,0,-156.222	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/0:185:184,1:184:6612:1:36:0,-52.0923,-591.558	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/1:159:86,73:86:3050:73:2616:-187.824,0,-226.864	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.914	0/0:117:117,0:117:4169:0:0:0,-35.2205,-375.336	0/0:109:109,0:109:3893:0:0:0,-32.8123,-350.563	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:109:58,50:58:2076:50:1791:-128.6,0,-154.239	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:12:11,1:11:381:1:36:0,-0.0140849,-31.0224	0/1:74:41,33:41:1472:33:1180:-84.2318,0,-110.5	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:44:44,0:44:1556:0:0:0,-13.2453,-140.329	0/0:89:89,0:89:3189:0:0:0,-26.7917,-287.231	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:201:201,0:201:7164:0:0:0,-60.507,-644.816	0/0:175:173,2:173:6189:2:72:0,-45.8435,-550.269	0/1:79:50,29:50:1788:29:1040:-70.133,0,-137.421	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.115	0/0:214:212,1:212:7612:1:36:0,-60.8809,-681.516	0/0:42:41,1:41:1476:1:36:0,-9.04498,-129.538	0/1:10:8,2:8:279:2:72:-3.82642,0,-22.4372	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/1:58:36,22:36:1292:22:788:-53.7851,0,-99.124	0/0:201:201,0:201:7184:0:0:0,-60.507,-646.615	0/0:139:139,0:139:4981:0:0:0,-41.8432,-448.436	0/0:114:114,0:114:4092:0:0:0,-34.3174,-368.465	0/0:96:96,0:96:3456:0:0:0,-28.8989,-311.251	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:76:34,42:34:1211:42:1508:-113.136,0,-86.4172	0/0:167:166,1:166:5937:1:36:0,-46.6737,-530.839	0/0:93:93,0:93:3324:0:0:0,-27.9958,-299.376	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:133:133,0:133:4769:0:0:0,-40.037,-429.364	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:70:34,36:34:1220:36:1292:-95.5117,0,-89.0347	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:56:25,31:25:900:31:1116:-83.894,0,-64.4633	0/1:72:19,53:19:680:53:1908:-150.323,0,-39.855	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24
chr08	26153611	.	A	G	303450	PASS	AB=0.536301;ABP=29.4959;AC=167;AF=0.888298;AN=188;AO=10829;CIGAR=1X;DP=11924;DPB=11924;DPRA=0;EPP=23474.5;EPPR=2367.74;GTI=1;LEN=1;MEANALT=1.06383;MQM=57.252;MQMR=59.9431;NS=94;NUMALT=1;ODDS=8.27151;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=382616;QR=38369;RO=1089;RPL=5068;RPP=99.3117;RPPR=3.02825;RPR=5761;RUN=1;SAF=5071;SAP=97.6513;SAR=5758;SRF=546;SRP=3.02825;SRR=543;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,49:0:0:49:1755:-157.6,-14.7505,0	1/1:174:0,174:0:0:174:6150:-551.921,-52.3792,0	1/1:197:0,197:0:0:197:7006:-629.328,-59.3029,0	1/1:176:2,174:2:72:174:6162:-547.401,-46.1446,0	1/1:91:0,91:0:0:91:3190:-287.009,-27.3937,0	1/1:56:0,56:0:0:56:1980:-178.318,-16.8577,0	1/1:145:0,145:0:0:145:5140:-462.499,-43.6494,0	1/1:172:0,172:0:0:172:6022:-541.113,-51.7772,0	1/1:114:0,113:0:0:113:3972:-356.772,-34.0164,0	1/1:151:0,151:0:0:151:5338:-479.735,-45.4555,0	1/1:168:0,168:0:0:168:5949:-535.206,-50.573,0	1/1:147:0,146:0:0:146:5141:-461.93,-43.9504,0	1/1:153:0,153:0:0:153:5419:-487.004,-46.0576,0	1/1:188:0,188:0:0:188:6682:-600.951,-56.5936,0	1/1:129:0,129:0:0:129:4571:-411.314,-38.8329,0	1/1:142:0,142:0:0:142:4983:-448.062,-42.7463,0	1/1:168:0,168:0:0:168:5916:-531.683,-50.573,0	1/1:95:0,95:0:0:95:3340:-300.279,-28.5979,0	1/1:96:0,96:0:0:96:3408:-306.61,-28.8989,0	1/1:237:0,237:0:0:237:8365:-752.135,-71.3441,0	1/1:178:0,178:0:0:178:6238:-560.561,-53.5833,0	1/1:82:0,81:0:0:81:2872:-258.212,-24.3834,0	1/1:59:0,59:0:0:59:2045:-184.169,-17.7608,0	0/1:73:35,38:35:1256:38:1359:-100.039,0,-91.3701	1/1:90:0,90:0:0:90:3161:-284.186,-27.0927,0	0/1:276:127,149:127:4457:149:5291:-392.159,0,-318.219	1/1:330:2,328:2:68:328:11633:-1039.32,-92.8822,0	0/1:83:37,46:37:1312:46:1622:-121.203,0,-93.3962	1/1:263:0,263:0:0:263:9265:-833.342,-79.1709,0	0/1:128:13,115:13:456:115:4061:-326.582,0,-2.8414	0/1:92:39,53:39:1383:53:1899:-143.41,0,-97.0718	0/1:8:5,3:5:161:3:108:-7.66217,0,-12.3983	1/1:21:0,21:0:0:21:726:-65.5966,-6.32163,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:7:0,7:0:0:7:248:-22.662,-2.10721,0	0/1:21:15,6:15:540:6:216:-13.4689,0,-42.6149	1/1:307:0,307:0:0:307:10879:-977.591,-92.4162,0	1/1:99:3,96:3:108:96:3384:-294.507,-19.7268,0	1/1:131:0,131:0:0:131:4636:-416.767,-39.4349,0	1/1:4:0,4:0:0:4:144:-13.312,-1.20412,0	0/1:151:71,79:71:2531:79:2807:-207.204,0,-182.527	0/1:93:44,49:44:1538:49:1750:-129.44,0,-110.712	1/1:172:0,172:0:0:172:6078:-546.392,-51.7772,0	1/1:148:0,148:0:0:148:5175:-464.962,-44.5524,0	1/1:120:0,120:0:0:120:4232:-380.819,-36.1236,0	1/1:106:0,106:0:0:106:3766:-339.013,-31.9092,0	1/1:116:1,115:1:36:115:4076:-362.588,-31.3212,0	0/1:152:64,88:64:2278:88:3082:-231.331,0,-159.524	1/1:119:0,119:0:0:119:4225:-380.055,-35.8226,0	1/1:175:0,175:0:0:175:6148:-553.072,-52.6803,0	1/1:152:0,152:0:0:152:5377:-483.809,-45.7566,0	0/1:10:4,6:4:144:6:216:-16.7731,0,-10.3033	0/1:145:71,74:71:2497:74:2620:-192.201,0,-181.323	1/1:69:0,69:0:0:69:2434:-218.791,-20.7711,0	0/1:14:5,9:5:176:9:320:-24.9032,0,-11.9706	0/1:138:70,68:70:2465:68:2359:-170.512,0,-180.562	1/1:31:0,31:0:0:31:1108:-100.005,-9.33193,0	1/1:5:0,5:0:0:5:180:-16.5502,-1.50515,0	1/1:17:0,17:0:0:17:580:-52.4907,-5.11751,0	1/1:78:0,78:0:0:78:2746:-247.264,-23.4803,0	1/1:175:1,174:1:36:174:6122:-546.959,-49.082,0	1/1:7:0,7:0:0:7:248:-22.6538,-2.10721,0	1/1:164:0,164:0:0:164:5788:-520.676,-49.3689,0	1/1:207:1,206:1:36:206:7248:-648.217,-58.7149,0	0/1:103:37,66:37:1280:66:2328:-178.581,0,-84.4889	1/1:94:0,94:0:0:94:3301:-296.873,-28.2968,0	1/1:164:0,164:0:0:164:5779:-519.79,-49.3689,0	1/1:123:2,120:2:72:120:4267:-377.134,-30.1555,0	1/1:95:0,95:0:0:95:3396:-305.779,-28.5979,0	1/1:72:0,72:0:0:72:2565:-230.289,-21.6742,0	1/1:152:0,152:0:0:152:5329:-479.397,-45.7566,0	0/1:25:16,9:16:564:9:316:-21.2403,0,-43.5646	1/1:114:0,114:0:0:114:4009:-359.774,-34.3174,0	0/1:113:60,53:60:2080:53:1889:-136.104,0,-153.439	1/1:154:0,154:0:0:154:5444:-488.929,-46.3586,0	1/1:209:1,208:1:36:208:7448:-665.673,-59.317,0	1/1:178:0,178:0:0:178:6294:-565.552,-53.5833,0	1/1:153:1,152:1:32:152:5356:-478.109,-42.8583,0	1/1:15:0,15:0:0:15:510:-46.2086,-4.51545,0	1/1:172:0,172:0:0:172:6075:-546.035,-51.7772,0	0/1:195:92,103:92:3255:103:3630:-267.342,0,-234.242	1/1:184:2,182:2:63:182:6442:-573.328,-49.4064,0	1/1:135:0,135:0:0:135:4737:-425.445,-40.6391,0	1/1:139:0,139:0:0:139:4938:-443.678,-41.8432,0	1/1:136:0,136:0:0:136:4780:-430.016,-40.9401,0	1/1:310:1,309:1:36:309:10927:-978.667,-89.721,0	1/1:48:0,48:0:0:48:1705:-153.132,-14.4494,0	0/1:132:72,60:72:2533:60:2125:-151.301,0,-188.483	1/1:153:0,153:0:0:153:5432:-488.268,-46.0576,0	1/1:145:0,145:0:0:145:5142:-462.571,-43.6494,0	0/1:243:107,136:107:3793:136:4781:-357.072,0,-268.415	0/1:119:88,31:88:3075:31:1099:-62.6578,0,-241.15	1/1:173:0,173:0:0:173:6154:-553.441,-52.0782,0	1/1:210:0,210:0:0:210:7421:-666.779,-63.2163,0
chr08	26237505	.	T	A	124948	PASS	AB=0.528861;ABP=12.2856;AC=166;AF=0.892473;AN=186;AO=5764;CIGAR=1X;DP=6380;DPB=6380;DPRA=0;EPP=12519.4;EPPR=1334.12;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.992;MQMR=59.9347;NS=93;NUMALT=1;ODDS=3.23237;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201389;QR=21969;RO=613;RPL=0;RPP=12519.4;RPPR=1334.12;RPR=5764;RUN=1;SAF=5764;SAP=12519.4;SAR=0;SRF=613;SRP=1334.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:610:-55.2157,-5.41854,0	1/1:47:0,47:0:0:47:1642:-148.064,-14.1484,0	1/1:89:0,89:0:0:89:3060:-275.623,-26.7917,0	1/1:94:0,94:0:0:94:3293:-296.585,-28.2968,0	1/1:32:0,32:0:0:32:1125:-101.556,-9.63296,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:99:0,99:0:0:99:3521:-317.098,-29.802,0	1/1:73:0,73:0:0:73:2563:-230.909,-21.9752,0	1/1:44:0,44:0:0:44:1550:-139.788,-13.2453,0	1/1:151:0,151:0:0:151:5257:-473.271,-45.4555,0	1/1:70:0,70:0:0:70:2488:-224.171,-21.0721,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:59:0,59:0:0:59:2048:-184.585,-17.7608,0	1/1:66:0,66:0:0:66:2330:-209.957,-19.868,0	1/1:75:0,74:0:0:74:2622:-235.865,-22.2762,0	1/1:52:0,52:0:0:52:1791:-161.466,-15.6536,0	1/1:65:0,65:0:0:65:2252:-202.938,-19.567,0	1/1:64:0,63:0:0:63:2162:-194.478,-18.9649,0	1/1:58:0,58:0:0:58:1921:-173.152,-17.4597,0	1/1:74:0,74:0:0:74:2600:-234.243,-22.2762,0	1/1:62:0,62:0:0:62:2152:-193.941,-18.6639,0	1/1:65:0,65:0:0:65:2264:-204.017,-19.567,0	1/1:39:0,39:0:0:39:1377:-124.227,-11.7402,0	0/1:65:27,38:27:968:38:1337:-101.061,0,-67.8704	1/1:39:0,39:0:0:39:1366:-123.234,-11.7402,0	0/1:118:56,62:56:2008:62:2159:-159.051,0,-144.021	1/1:127:0,127:0:0:127:4444:-400.127,-38.2308,0	0/1:24:13,11:13:468:11:362:-25.6711,0,-35.2349	1/1:118:0,118:0:0:118:4176:-376.025,-35.5215,0	1/1:152:4,148:4:144:148:5078:-443.85,-32.4429,0	0/1:70:41,29:41:1468:29:995:-68.7813,0,-111.344	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:404:-36.6817,-3.61236,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:10:0,10:0:0:10:337:-30.6547,-3.0103,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:131:0,131:0:0:131:4642:-417.945,-39.4349,0	1/1:117:0,117:0:0:117:3985:-358.836,-35.2205,0	1/1:96:0,95:0:0:95:3248:-292.177,-28.5979,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:128:44,84:44:1584:84:2906:-223.239,0,-104.32	0/1:40:17,23:17:608:23:756:-56.3005,0,-43.0108	1/1:97:0,97:0:0:97:3419:-307.923,-29.1999,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:54:0,54:0:0:54:1867:-168.304,-16.2556,0	1/1:57:0,57:0:0:57:2020:-182.073,-17.1587,0	1/1:66:0,66:0:0:66:2299:-207.166,-19.868,0	0/1:80:39,41:39:1392:41:1422:-104.189,0,-101.497	1/1:123:0,123:0:0:123:4291:-386.366,-37.0267,0	1/1:98:1,97:1:36:97:3390:-301.712,-25.9027,0	1/1:139:0,139:0:0:139:4950:-445.65,-41.8432,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:96:29,67:29:1029:67:2283:-176.824,0,-64.0223	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	0/1:12:10,2:10:360:2:57:-1.80095,0,-29.1319	0/1:104:62,42:62:2208:42:1462:-100.563,0,-167.678	1/1:34:0,34:0:0:34:1201:-108.394,-10.235,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	1/1:61:0,61:0:0:61:2123:-191.324,-18.3628,0	1/1:146:1,145:1:36:145:5181:-462.831,-40.3521,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:81:0,81:0:0:81:2835:-255.387,-24.3834,0	1/1:90:0,90:0:0:90:3105:-279.677,-27.0927,0	0/1:84:26,58:26:932:58:1986:-153.718,0,-58.9123	1/1:49:0,49:0:0:49:1703:-153.55,-14.7505,0	1/1:62:1,61:1:36:61:2102:-185.841,-15.0656,0	1/1:92:2,90:2:72:90:3087:-271.216,-20.858,0	1/1:35:0,35:0:0:35:1210:-109.199,-10.5361,0	1/1:49:0,49:0:0:49:1737:-156.612,-14.7505,0	1/1:67:0,67:0:0:67:2363:-212.924,-20.169,0	0/1:24:10,14:10:356:14:500:-38.1115,0,-25.1565	1/1:98:0,98:0:0:98:3431:-309.003,-29.5009,0	0/1:56:35,21:35:1256:21:733:-49.432,0,-96.4876	1/1:117:0,117:0:0:117:4117:-370.712,-35.2205,0	1/1:72:0,72:0:0:72:2523:-227.319,-21.6742,0	1/1:128:0,128:0:0:128:4464:-401.927,-38.5318,0	1/1:78:0,78:0:0:78:2692:-242.523,-23.4803,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:118:0,118:0:0:118:4074:-366.843,-35.5215,0	0/1:108:59,49:59:2120:49:1684:-119.327,0,-158.557	1/1:108:0,108:0:0:108:3826:-344.537,-32.5112,0	1/1:73:0,73:0:0:73:2559:-230.557,-21.9752,0	1/1:67:0,67:0:0:67:2408:-216.974,-20.169,0	1/1:64:0,64:0:0:64:2224:-200.419,-19.2659,0	1/1:98:0,98:0:0:98:3504:-315.571,-29.5009,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:75:34,41:34:1220:41:1411:-104.702,0,-87.5296	1/1:58:0,58:0:0:58:2073:-186.839,-17.4597,0	1/1:83:0,83:0:0:83:2859:-257.542,-24.9855,0	0/1:134:63,71:63:2264:71:2503:-185.18,0,-163.684	0/1:43:29,14:29:1044:14:496:-32.03,0,-81.3305	1/1:47:0,47:0:0:47:1619:-145.992,-14.1484,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0
chr08	26237690	.	C	A	12170.1	PASS	AB=0.522976;ABP=9.29664;AC=21;AF=0.111702;AN=188;AO=732;CIGAR=1X;DP=6084;DPB=6084;DPRA=1.46401;EPP=1566.58;EPPR=10765.9;GTI=1;LEN=1;MEANALT=1.06667;MQM=59.9221;MQMR=59.9415;NS=94;NUMALT=1;ODDS=0.616354;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25989;QR=190508;RO=5349;RPL=2;RPP=1575.2;RPPR=10782.6;RPR=730;RUN=1;SAF=731;SAP=1583.85;SAR=1;SRF=5347;SRP=11600.9;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:145:145,0:145:5177:0:0:0,-43.6493,-466.034	0/0:60:60,0:60:2122:0:0:0,-18.0618,-191.248	0/0:200:200,0:200:7090:0:0:0,-60.206,-638.165	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:113:112,1:112:3985:1:36:0,-30.4181,-355.242	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.113	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.874	0/0:77:77,0:77:2726:0:0:0,-23.1793,-245.514	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.655	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.416	0/0:45:45,0:45:1586:0:0:0,-13.5463,-143.028	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/0:55:55,0:55:1947:0:0:0,-16.5566,-175.505	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:120:119,1:119:4223:1:36:0,-32.5253,-376.652	0/0:100:100,0:100:3568:0:0:0,-30.103,-321.328	0/0:70:70,0:70:2492:0:0:0,-21.0721,-223.677	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/1:76:37,39:37:1332:39:1374:-101.078,0,-96.8756	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:207:101,106:101:3600:106:3793:-279.255,0,-261.894	0/0:115:113,2:113:4026:2:72:0,-27.7817,-355.692	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/0:204:202,1:202:7179:1:36:0,-57.8706,-642.54	0/0:70:68,1:68:2435:1:36:0,-17.5326,-215.806	0/1:84:37,47:37:1328:47:1663:-124.67,0,-94.5357	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:127:127,0:127:4498:0:0:0,-38.2308,-404.978	0/0:83:83,0:83:2959:0:0:0,-24.9855,-266.544	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:220:119,101:119:4234:101:3593:-257.348,0,-315.014	0/1:37:18,19:18:644:19:680:-50.3911,0,-47.1525	0/0:73:73,0:73:2592:0:0:0,-21.9752,-233.53	0/0:71:71,0:71:2532:0:0:0,-21.3731,-228.132	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:54:54,0:54:1912:0:0:0,-16.2556,-172.329	0/1:113:49,64:49:1744:64:2283:-171.715,0,-123.228	0/0:77:77,0:77:2716:0:0:0,-23.1793,-244.683	0/0:118:118,0:118:4203:0:0:0,-35.5215,-378.453	0/0:83:83,0:83:2945:0:0:0,-24.9855,-265.284	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:163:70,93:70:2508:93:3276:-245.906,0,-176.904	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:9:6,3:6:212:3:100:-6.62117,0,-16.7155	0/1:72:42,30:42:1497:30:1072:-75.1183,0,-113.348	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8064	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.8876	0/0:45:45,0:45:1591:0:0:0,-13.5463,-143.48	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.731	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/0:156:156,0:156:5550:0:0:0,-46.9607,-499.612	0/0:132:130,2:130:4628:2:72:0,-32.8992,-409.849	0/1:51:24,27:24:860:27:947:-70.1912,0,-62.3693	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.965	0/0:100:99,1:99:3531:1:27:0,-27.4032,-315.3	0/0:65:63,2:63:2256:2:72:0,-12.7302,-196.466	0/0:11:11,0:11:380:0:0:0,-3.31133,-34.532	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.271	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:53:21,32:21:748:32:1144:-87.3149,0,-51.6907	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/0:156:156,0:156:5574:0:0:0,-46.9607,-501.783	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:88:87,1:87:3116:1:36:0,-22.8924,-277.068	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:101:100,0:100:3563:0:0:0,-30.103,-319.892	0/1:93:44,49:44:1571:49:1730:-127.989,0,-113.685	0/0:124:124,0:124:4431:0:0:0,-37.3277,-398.962	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.611	0/0:51:51,0:51:1802:0:0:0,-15.3525,-162.46	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:96:95,1:95:3378:1:36:0,-25.3006,-300.638	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:63:33,30:33:1184:30:1062:-76.9251,0,-87.9034	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:49:21,28:21:752:28:1000:-75.4578,0,-53.2558	0/1:37:13,24:13:468:24:845:-65.2299,0,-31.3215	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/0:71:71,0:71:2511:0:0:0,-21.3731,-226.243
chr08	26237731	.	T	A	271541	PASS	AB=0.480426;ABP=10.8313;AC=167;AF=0.888298;AN=188;AO=9673;CIGAR=1X;DP=10918;DPB=10918;DPRA=0;EPP=20981.6;EPPR=2697.81;GTI=0;LEN=1;MEANALT=1;MQM=58.4148;MQMR=58.3181;NS=94;NUMALT=1;ODDS=5.71101;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=343229;QR=44009;RO=1245;RPL=4917;RPP=8.82925;RPPR=26.0767;RPR=4756;RUN=1;SAF=4916;SAP=8.68558;SAR=4757;SRF=679;SRP=25.2814;SRR=566;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54:0:0:54:1918:-172.758,-16.2556,0	1/1:181:0,181:0:0:181:6381:-573.923,-54.4864,0	1/1:155:0,155:0:0:155:5445:-489.3,-46.6597,0	1/1:298:0,298:0:0:298:10574:-950.867,-89.7069,0	1/1:48:0,48:0:0:48:1699:-153.108,-14.4494,0	1/1:20:0,20:0:0:20:712:-64.3885,-6.0206,0	1/1:123:0,123:0:0:123:4384:-394.684,-37.0267,0	1/1:165:0,165:0:0:165:5837:-524.785,-49.67,0	1/1:137:0,137:0:0:137:4864:-437.58,-41.2411,0	1/1:133:0,133:0:0:133:4748:-427.136,-40.037,0	1/1:86:0,86:0:0:86:3041:-273.696,-25.8886,0	1/1:112:0,112:0:0:112:3951:-355.395,-33.7154,0	1/1:102:0,102:0:0:102:3590:-322.673,-30.7051,0	1/1:106:0,106:0:0:106:3725:-335.156,-31.9092,0	1/1:113:0,113:0:0:113:3993:-359.535,-34.0164,0	1/1:95:0,95:0:0:95:3340:-300.496,-28.5979,0	1/1:82:0,82:0:0:82:2897:-260.861,-24.6845,0	1/1:70:0,70:0:0:70:2475:-221.912,-21.0721,0	1/1:52:0,52:0:0:52:1834:-165.15,-15.6536,0	1/1:206:1,205:1:36:205:7262:-649.166,-58.4139,0	1/1:225:2,223:2:72:223:7915:-704.287,-60.9002,0	1/1:112:0,112:0:0:112:3962:-356.744,-33.7154,0	1/1:110:1,109:1:27:109:3865:-345.259,-30.4135,0	0/1:132:67,65:67:2361:65:2324:-169.07,0,-172.213	1/1:89:0,89:0:0:89:3160:-284.39,-26.7917,0	0/1:319:162,157:162:5749:157:5575:-405.786,0,-421.419	1/1:236:1,235:1:36:235:8385:-749.524,-67.4448,0	0/1:53:26,27:26:916:27:972:-71.8217,0,-66.7756	1/1:283:0,283:0:0:283:10057:-904.221,-85.1915,0	1/1:130:4,126:4:136:126:4468:-389.055,-26.5622,0	0/1:151:85,66:85:3023:66:2340:-165.367,0,-226.509	0/1:11:5,6:5:180:6:216:-16.4776,0,-13.2376	1/1:5:0,5:0:0:5:176:-16.1828,-1.50515,0	0/1:5:2,3:2:72:3:108:-8.55964,0,-5.33157	1/1:7:0,7:0:0:7:252:-23.0052,-2.10721,0	0/1:9:4,5:4:140:5:180:-13.7346,0,-10.2187	1/1:272:0,272:0:0:272:9656:-868.789,-81.8802,0	1/1:130:0,130:0:0:130:4599:-413.727,-39.1339,0	1/1:101:0,101:0:0:101:3567:-320.808,-30.404,0	1/1:2:0,2:0:0:2:72:-6.8351,-0.60206,0	0/1:247:107,140:107:3772:140:4982:-374.13,0,-265.204	0/1:71:32,39:32:1131:39:1363:-101.502,0,-80.6587	1/1:114:0,114:0:0:114:4072:-365.699,-34.3174,0	1/1:128:0,128:0:0:128:4526:-406.83,-38.5318,0	1/1:91:0,91:0:0:91:3239:-291.477,-27.3937,0	1/1:113:0,113:0:0:113:4033:-363.071,-34.0164,0	1/1:104:0,104:0:0:104:3677:-330.82,-31.3071,0	0/1:194:114,80:114:4012:80:2829:-196.277,0,-302.219	1/1:100:0,100:0:0:100:3561:-320.686,-30.103,0	1/1:208:0,208:0:0:208:7378:-663.829,-62.6142,0	1/1:130:0,130:0:0:130:4651:-418.174,-39.1339,0	0/1:11:8,3:8:288:3:99:-5.87875,0,-22.9553	0/1:233:128,105:128:4536:105:3738:-266.201,0,-338.051	1/1:44:0,44:0:0:44:1549:-139.7,-13.2453,0	0/1:9:3,6:3:99:6:212:-16.7121,0,-6.52731	0/1:163:86,77:86:3033:77:2743:-197.694,0,-223.016	1/1:33:0,33:0:0:33:1166:-105.229,-9.93399,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:21:0,21:0:0:21:748:-67.6085,-6.32163,0	1/1:81:0,81:0:0:81:2891:-260.23,-24.3834,0	1/1:168:0,168:0:0:168:5934:-533.76,-50.573,0	1/1:9:0,9:0:0:9:312:-28.4059,-2.70927,0	1/1:242:0,242:0:0:242:8597:-773.618,-72.8493,0	1/1:189:5,184:5:180:184:6512:-569.317,-40.3438,0	0/1:76:38,38:38:1356:38:1360:-99.7985,0,-99.4421	1/1:120:1,119:1:36:119:4239:-378.025,-32.5253,0	1/1:169:1,168:1:32:168:5993:-536.068,-47.6749,0	1/1:173:4,169:4:144:169:6013:-526.982,-38.7654,0	1/1:63:0,63:0:0:63:2203:-198.321,-18.9649,0	1/1:55:0,55:0:0:55:1961:-176.668,-16.5567,0	1/1:82:0,82:0:0:82:2888:-260.128,-24.6845,0	0/1:35:22,13:22:784:13:455:-30.7421,0,-59.7461	1/1:77:0,77:0:0:77:2720:-244.543,-23.1793,0	0/1:123:63,60:63:2224:60:2140:-155.706,0,-163.247	1/1:90:0,90:0:0:90:3212:-289.052,-27.0927,0	1/1:263:0,263:0:0:263:9345:-839.966,-79.1709,0	1/1:63:0,63:0:0:63:2252:-202.593,-18.9649,0	1/1:171:0,171:0:0:171:6095:-547.981,-51.4761,0	1/1:22:0,22:0:0:22:777:-70.1121,-6.62266,0	1/1:149:1,148:1:36:148:5257:-467.803,-41.2569,0	0/1:147:74,73:74:2625:73:2607:-190.528,0,-192.153	1/1:239:0,239:0:0:239:8492:-763.759,-71.9462,0	1/1:96:0,96:0:0:96:3418:-307.775,-28.8989,0	1/1:118:0,118:0:0:118:4197:-377.663,-35.5215,0	1/1:93:0,93:0:0:93:3288:-296.107,-27.9958,0	1/1:178:2,176:2:72:176:6249:-555.04,-46.747,0	1/1:44:0,44:0:0:44:1550:-139.68,-13.2453,0	0/1:107:43,64:43:1504:64:2267:-171.99,0,-103.321	1/1:117:1,116:1:36:116:4127:-367.883,-31.7398,0	1/1:81:0,81:0:0:81:2860:-257.357,-24.3834,0	0/1:150:90,60:90:3189:60:2111:-144.761,0,-241.533	0/1:104:62,42:62:2172:42:1488:-102.7,0,-164.377	1/1:116:0,116:0:0:116:4144:-372.921,-34.9195,0	1/1:165:0,165:0:0:165:5870:-528.263,-49.67,0
chr08	26237733	.	G	A	23767.5	PASS	AB=0.536941;ABP=25.7916;AC=19;AF=0.101064;AN=188;AO=1058;CIGAR=1X;DP=9176;DPB=9176;DPRA=1.5437;EPP=2291.75;EPPR=17598.5;GTI=1;LEN=1;MEANALT=1;MQM=58.0822;MQMR=58.1128;NS=94;NUMALT=1;ODDS=0.969955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37673;QR=283904;RO=8115;RPL=493;RPP=13.6501;RPPR=622.058;RPR=565;RUN=1;SAF=492;SAP=14.2494;SAR=566;SRF=3296;SRP=623.687;SRR=4819;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:40:40,0:40:1414:0:0:0,-12.0412,-127.426	0/0:40:40,0:40:1405:0:0:0,-12.0412,-126.283	0/0:106:106,0:106:3760:0:0:0,-31.9092,-337.799	0/0:276:276,0:276:9603:0:0:0,-83.0843,-863.617	0/0:39:39,0:39:1367:0:0:0,-11.7402,-123.302	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7701	0/0:107:107,0:107:3687:0:0:0,-32.2102,-332.033	0/0:85:84,0:84:2978:0:0:0,-25.2865,-267.405	0/0:74:74,0:74:2633:0:0:0,-22.2762,-236.664	0/0:124:124,0:124:4341:0:0:0,-37.3277,-390.548	0/0:85:85,0:85:2980:0:0:0,-25.5875,-268.118	0/0:74:74,0:74:2587:0:0:0,-22.2762,-232.541	0/0:75:75,0:75:2640:0:0:0,-22.5772,-236.791	0/0:92:92,0:92:3260:0:0:0,-27.6948,-293.393	0/0:107:107,0:107:3750:0:0:0,-32.2102,-337.638	0/0:85:85,0:85:3011:0:0:0,-25.5875,-270.753	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.039	0/0:37:37,0:37:1315:0:0:0,-11.1381,-117.556	0/0:30:30,0:30:1053:0:0:0,-9.0309,-94.8778	0/0:202:201,1:201:7005:1:36:0,-57.2098,-626.041	0/0:217:215,2:215:7573:2:72:0,-58.4919,-673.068	0/0:107:107,0:107:3749:0:0:0,-32.2102,-337.585	0/0:103:102,1:102:3529:1:36:0,-27.4078,-314.115	0/1:123:54,69:54:1911:69:2464:-184.234,0,-135.057	0/0:85:85,0:85:2973:0:0:0,-25.5875,-267.627	0/1:321:151,170:151:5236:170:6058:-448.616,0,-374.725	0/0:223:222,1:222:7804:1:36:0,-63.5314,-697.854	0/1:54:26,28:26:924:28:1004:-74.3946,0,-67.2004	0/0:270:270,0:270:9348:0:0:0,-81.2781,-840.74	0/0:132:128,4:128:4520:4:144:0,-26.4271,-392.986	0/1:131:52,79:52:1763:79:2786:-211.249,0,-119.493	0/1:12:7,5:7:252:5:180:-12.9366,0,-19.415	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4217	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.6697	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0052	0/1:5:1,4:1:36:4:144:-11.7898,0,-1.97555	0/0:253:252,1:252:8721:1:36:0,-72.5938,-781.168	0/0:119:119,0:119:4169:0:0:0,-35.8226,-375.039	0/0:60:60,0:60:2131:0:0:0,-18.0618,-191.625	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/1:227:118,109:118:4109:109:3888:-281.657,0,-301.625	0/1:70:37,33:37:1304:33:1184:-85.7288,0,-96.4942	0/0:101:101,0:101:3540:0:0:0,-30.404,-318.589	0/0:117:117,0:117:4059:0:0:0,-35.2205,-364.198	0/0:87:87,0:87:2999:0:0:0,-26.1896,-269.418	0/0:111:110,0:110:3864:0:0:0,-33.1133,-347.663	0/0:56:56,0:56:1973:0:0:0,-16.8577,-177.555	0/1:190:79,111:79:2764:111:3967:-299.849,0,-191.607	0/0:90:90,0:90:3108:0:0:0,-27.0927,-279.895	0/0:189:188,0:188:6626:0:0:0,-56.5936,-596.035	0/0:124:123,1:123:4278:1:36:0,-33.7609,-381.056	0/1:8:1,7:1:32:7:244:-19.8904,0,-0.791073	0/1:83:42,41:42:1495:41:1467:-107.04,0,-109.519	0/0:43:43,0:43:1522:0:0:0,-12.9443,-137.268	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.4563	0/1:161:77,84:77:2694:84:2987:-220.149,0,-193.821	0/0:29:29,0:29:1005:0:0:0,-8.72987,-90.7405	0/0:9:9,0:9:307:0:0:0,-2.70927,-27.9602	0/0:19:19,0:19:666:0:0:0,-5.71957,-60.2636	0/0:79:79,0:79:2773:0:0:0,-23.7814,-249.634	0/0:160:160,0:160:5593:0:0:0,-48.1648,-503.097	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9017	0/0:236:236,0:236:8222:0:0:0,-71.0431,-739.761	0/0:165:160,5:160:5600:5:180:0,-33.1191,-486.764	0/1:72:33,39:33:1161:39:1396:-104.245,0,-83.0958	0/0:111:110,1:110:3765:1:36:0,-29.8161,-335.35	0/0:166:165,1:165:5692:1:36:0,-46.3731,-508.489	0/0:161:157,4:157:5547:4:144:0,-35.153,-484.851	0/0:60:60,0:60:2102:0:0:0,-18.0618,-189.233	0/0:29:29,0:29:1020:0:0:0,-8.72987,-92.0212	0/0:81:81,0:81:2816:0:0:0,-24.3834,-253.606	0/1:35:12,23:12:432:23:813:-62.3488,0,-28.6807	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.4547	0/1:71:43,28:43:1523:28:996:-68.4892,0,-115.857	0/0:79:79,0:79:2772:0:0:0,-23.7814,-249.609	0/0:251:251,0:251:8741:0:0:0,-75.5585,-785.402	0/0:48:48,0:48:1696:0:0:0,-14.4494,-152.574	0/0:88:88,0:88:3125:0:0:0,-26.4906,-281.074	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.114	0/0:131:130,1:130:4601:1:36:0,-35.8384,-410.218	0/1:64:32,32:32:1135:32:1139:-83.4503,0,-83.0887	0/0:222:222,0:222:7768:0:0:0,-66.8287,-698.534	0/0:83:83,0:83:2853:0:0:0,-24.9855,-256.904	0/0:113:113,0:113:3975:0:0:0,-34.0164,-357.694	0/0:76:76,0:76:2662:0:0:0,-22.8783,-239.769	0/0:159:156,3:156:5394:3:108:0,-37.8355,-474.966	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.6989	0/1:49:31,18:31:1104:18:648:-43.7102,0,-84.8224	0/0:72:72,0:72:2531:0:0:0,-21.6742,-227.693	0/0:75:75,0:75:2617:0:0:0,-22.5772,-235.434	0/1:145:54,91:54:1886:91:3210:-244.943,0,-125.989	0/1:101:40,61:40:1424:61:2162:-164.227,0,-97.8718	0/0:113:113,0:113:3954:0:0:0,-34.0164,-355.833	0/0:157:157,0:157:5498:0:0:0,-47.2617,-494.838
chr08	26528957	.	T	C	141914	PASS	AB=0.493389;ABP=3.55581;AC=167;AF=0.888298;AN=188;AO=6320;CIGAR=1X;DP=7055;DPB=7055;DPRA=0;EPP=13726.7;EPPR=1592.53;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9816;MQMR=59.9781;NS=94;NUMALT=1;ODDS=0.770833;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226242;QR=26211;RO=732;RPL=0;RPP=13726.7;RPPR=1592.53;RPR=6320;RUN=1;SAF=6320;SAP=13726.7;SAR=0;SRF=732;SRP=1592.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	1/1:127:0,127:0:0:127:4545:-409.215,-38.2308,0	1/1:210:0,210:0:0:210:7528:-677.56,-63.2163,0	1/1:73:0,73:0:0:73:2597:-233.977,-21.9752,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:141:0,141:0:0:141:5056:-455.184,-42.4452,0	1/1:85:0,85:0:0:85:3025:-272.48,-25.5876,0	1/1:62:1,61:1:36:61:2188:-193.587,-15.0656,0	1/1:72:0,72:0:0:72:2574:-231.91,-21.6742,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:41:0,41:0:0:41:1460:-131.695,-12.3422,0	1/1:46:0,46:0:0:46:1648:-148.608,-13.8474,0	1/1:34:0,34:0:0:34:1211:-109.285,-10.235,0	1/1:32:0,32:0:0:32:1137:-102.638,-9.63296,0	1/1:271:0,271:0:0:271:9728:-875.464,-81.5791,0	1/1:159:0,159:0:0:159:5700:-513.117,-47.8638,0	1/1:106:0,106:0:0:106:3789:-341.207,-31.9092,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:105:45,60:45:1589:60:2137:-160.989,0,-111.69	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	0/1:224:122,102:122:4384:102:3664:-262.532,0,-327.245	1/1:163:0,163:0:0:163:5798:-521.936,-49.0679,0	0/1:26:9,17:9:324:17:601:-46.5916,0,-21.6791	1/1:246:0,246:0:0:246:8836:-795.222,-74.0534,0	1/1:81:2,79:2:72:79:2808:-246.097,-17.5467,0	0/1:53:22,31:22:784:31:1097:-83.055,0,-54.9293	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:5,4:5:165:4:144:-10.6043,0,-12.4643	1/1:150:1,149:1:36:149:5326:-475.873,-41.5562,0	1/1:154:0,154:0:0:154:5501:-495.214,-46.3586,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:125:49,76:49:1745:76:2732:-208.493,0,-119.704	0/1:41:20,21:20:720:21:756:-56.025,0,-52.7865	1/1:131:0,131:0:0:131:4693:-422.515,-39.4349,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:102:0,102:0:0:102:3618:-325.756,-30.7051,0	1/1:103:0,103:0:0:103:3688:-332.123,-31.0061,0	0/1:136:89,47:89:3196:47:1669:-109.555,0,-246.923	1/1:100:0,100:0:0:100:3580:-322.407,-30.103,0	1/1:72:0,72:0:0:72:2583:-232.719,-21.6742,0	1/1:219:1,217:1:36:217:7741:-693.04,-62.3112,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:134:74,60:74:2660:60:2152:-153.609,0,-199.307	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	0/1:115:58,57:58:2068:57:2036:-148.894,0,-151.773	1/1:47:0,47:0:0:47:1643:-148.154,-14.1484,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:149:0,149:0:0:149:5340:-480.732,-44.8535,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:41:13,28:13:468:28:996:-77.6127,0,-30.1174	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:115:0,115:0:0:115:4121:-371.071,-34.6185,0	1/1:80:0,80:0:0:80:2849:-256.647,-24.0824,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	1/1:47:0,47:0:0:47:1681:-151.576,-14.1484,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:27:13,14:13:464:14:504:-37.5703,0,-33.9697	1/1:165:0,165:0:0:165:5921:-532.996,-49.67,0	0/1:69:32,37:32:1152:37:1324:-98.691,0,-83.2191	1/1:46:0,46:0:0:46:1649:-148.699,-13.8474,0	1/1:112:0,112:0:0:112:4028:-362.707,-33.7154,0	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	0/1:131:64,66:64:2288:66:2376:-174.751,0,-166.836	1/1:203:0,202:0:0:202:7242:-651.472,-60.8081,0	1/1:67:0,67:0:0:67:2397:-215.984,-20.169,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:56:0,56:0:0:56:2014:-181.533,-16.8577,0	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:54:28,26:28:1008:26:936:-68.3038,0,-74.7807	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:62:35,27:35:1256:27:960:-68.0524,0,-94.6814	0/1:48:30,18:30:1080:18:640:-43.4799,0,-83.0638	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:69:0,69:0:0:69:2463:-221.923,-20.7711,0
chr08	26546727	.	A	G	156119	PASS	AB=0.509704;ABP=3.81102;AC=171;AF=0.909574;AN=188;AO=6717;CIGAR=1X;DP=7226;DPB=7226;DPRA=0;EPP=13665.8;EPPR=1080.13;GTI=2;LEN=1;MEANALT=1.04255;MQM=53.7249;MQMR=59.6845;NS=94;NUMALT=1;ODDS=6.69889;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240433;QR=17953;RO=504;RPL=108;RPP=13665.8;RPPR=1080.13;RPR=6609;RUN=1;SAF=6717;SAP=14588.8;SAR=0;SRF=504;SRP=1097.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:1,9:1:36:9:305:-24.7056,0,-0.587975	1/1:47:0,47:0:0:47:1684:-151.109,-14.1484,0	1/1:91:0,91:0:0:91:3256:-291.817,-27.3937,0	1/1:94:0,94:0:0:94:3384:-304.299,-28.2968,0	1/1:13:0,13:0:0:13:468:-42.3923,-3.91339,0	1/1:14:0,14:0:0:14:500:-45.2262,-4.21442,0	1/1:91:0,91:0:0:91:3268:-293.807,-27.3937,0	1/1:43:0,43:0:0:43:1544:-138.907,-12.9443,0	1/1:35:0,35:0:0:35:1252:-112.529,-10.5361,0	1/1:35:0,35:0:0:35:1241:-111.655,-10.5361,0	1/1:123:0,123:0:0:123:4416:-396.895,-37.0267,0	1/1:32:0,32:0:0:32:1148:-103.219,-9.63296,0	1/1:28:1,27:1:36:27:964:-83.3232,-4.83057,0	1/1:26:0,26:0:0:26:932:-84.0831,-7.82678,0	1/1:14:0,14:0:0:14:504:-45.6675,-4.21442,0	1/1:22:0,22:0:0:22:784:-70.7787,-6.62266,0	1/1:21:0,21:0:0:21:743:-67.0378,-6.32163,0	1/1:17:0,17:0:0:17:612:-55.2823,-5.11751,0	1/1:77:0,77:0:0:77:2770:-248.495,-23.1793,0	1/1:64:0,64:0:0:64:2296:-206.492,-19.2659,0	1/1:49:0,49:0:0:49:1756:-157.961,-14.7505,0	1/1:39:0,39:0:0:39:1399:-126.122,-11.7402,0	1/1:30:0,30:0:0:30:1080:-97.4429,-9.0309,0	0/1:41:20,21:20:693:21:756:-55.9173,0,-50.3474	1/1:25:0,25:0:0:25:896:-80.5849,-7.52575,0	0/1:145:96,49:96:3433:49:1752:-114.148,0,-265.525	1/1:106:0,106:0:0:106:3808:-342.054,-31.9092,0	0/1:12:8,4:8:273:4:144:-9.68345,0,-21.2878	1/1:77:0,77:0:0:77:2764:-248.903,-23.1793,0	1/1:45:2,43:2:72:43:1540:-131.582,-6.70963,0	0/1:64:48,16:48:1728:16:576:-32.8676,0,-136.447	1/1:224:4,220:4:144:220:7888:-694.765,-54.118,0	1/1:322:0,322:0:0:322:11522:-1033.43,-96.9317,0	1/1:177:0,177:0:0:177:6307:-565.772,-53.2823,0	1/1:638:0,637:0:0:637:22747:-2033.41,-191.756,0	1/1:190:8,182:8:284:182:6507:-557.197,-31.2923,0	1/1:63:0,63:0:0:63:2227:-200.534,-18.9649,0	1/1:59:0,59:0:0:59:2112:-189.165,-17.7608,0	1/1:144:0,144:0:0:144:5153:-461.25,-43.3483,0	1/1:212:0,211:0:0:211:7577:-679.172,-63.5173,0	0/1:52:38,14:38:1338:14:496:-29.2478,0,-105.054	0/1:43:12,31:12:428:31:1116:-87.4692,0,-25.9145	1/1:61:0,61:0:0:61:2196:-197.28,-18.3628,0	1/1:12:0,12:0:0:12:432:-39.1953,-3.61236,0	1/1:15:0,15:0:0:15:540:-48.8078,-4.51545,0	1/1:53:0,53:0:0:53:1884:-169.663,-15.9546,0	1/1:33:0,33:0:0:33:1188:-106.413,-9.93399,0	0/1:80:43,37:43:1529:37:1317:-94.5449,0,-113.812	1/1:61:0,61:0:0:61:2192:-196.617,-18.3628,0	1/1:28:0,28:0:0:28:996:-89.8934,-8.42884,0	1/1:73:0,73:0:0:73:2608:-234.756,-21.9752,0	1/1:124:2,122:2:72:122:4365:-384.587,-30.491,0	0/1:64:41,23:41:1472:23:828:-55.2077,0,-113.51	1/1:21:0,20:0:0:20:716:-64.3884,-6.0206,0	1/1:207:4,203:4:140:203:7254:-636.69,-49.3889,0	0/1:53:38,15:38:1334:15:540:-32.6432,0,-104.078	1/1:26:0,26:0:0:26:936:-83.7843,-7.82678,0	1/1:219:0,219:0:0:219:7838:-704.373,-65.9256,0	1/1:351:0,349:0:0:349:12512:-1124,-105.059,0	1/1:48:0,48:0:0:48:1716:-154.237,-14.4494,0	1/1:46:1,45:1:36:45:1616:-141.713,-10.2491,0	1/1:200:0,200:0:0:200:7152:-642.814,-60.206,0	1/1:21:0,21:0:0:21:748:-67.5827,-6.32163,0	1/1:84:1,83:1:36:83:2980:-264.303,-21.6882,0	0/1:13:7,6:7:252:6:216:-15.8491,0,-19.1156	1/1:38:0,38:0:0:38:1356:-122.227,-11.4391,0	1/1:56:0,56:0:0:56:2001:-180.217,-16.8577,0	1/1:35:0,35:0:0:35:1248:-112.244,-10.5361,0	1/1:87:0,87:0:0:87:3124:-279.595,-26.1896,0	1/1:32:0,32:0:0:32:1129:-101.384,-9.63296,0	1/1:29:0,29:0:0:29:1029:-92.8877,-8.72987,0	0/1:90:10,80:10:356:80:2880:-231.641,0,-5.28231	1/1:40:0,40:0:0:40:1440:-129.397,-12.0412,0	0/1:17:11,6:11:396:6:216:-14.6315,0,-30.8652	1/1:50:0,50:0:0:50:1788:-160.77,-15.0515,0	1/1:38:0,38:0:0:38:1368:-123.301,-11.4391,0	1/1:37:0,37:0:0:37:1320:-118.632,-11.1381,0	1/1:24:0,24:0:0:24:864:-77.704,-7.22472,0	1/1:333:0,333:0:0:333:11968:-1071.48,-100.243,0	1/1:23:0,23:0:0:23:809:-72.8981,-6.92369,0	0/1:59:35,24:35:1241:24:864:-60.1255,0,-94.2317	1/1:100:1,99:1:36:99:3560:-316.294,-26.5047,0	1/1:30:0,30:0:0:30:1076:-96.8437,-9.0309,0	1/1:21:0,21:0:0:21:718:-64.8929,-6.32163,0	1/1:15:0,15:0:0:15:540:-48.9036,-4.51545,0	1/1:28:0,28:0:0:28:995:-89.775,-8.42884,0	1/1:20:0,20:0:0:20:716:-64.4264,-6.0206,0	0/1:38:29,9:29:1044:9:320:-17.6505,0,-82.8275	1/1:26:0,26:0:0:26:932:-83.8171,-7.82678,0	1/1:180:0,180:0:0:180:6418:-575.988,-54.1854,0	0/1:176:25,151:25:896:151:5403:-432.261,0,-27.9689	0/1:22:18,4:18:648:4:144:-6.68136,0,-52.0259	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:25:0,25:0:0:25:887:-80.0195,-7.52575,0
chr08	26546744	.	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chr08	26557919	.	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chr08	26599522	.	T	C	15548	PASS	AB=0.510858;ABP=4.89649;AC=21;AF=0.112903;AN=186;AO=960;CIGAR=1X;DP=9527;DPB=9527;DPRA=1.12;EPP=2087.62;EPPR=18597.3;GTI=0;LEN=1;MEANALT=1.05882;MQM=60;MQMR=59.9953;NS=93;NUMALT=1;ODDS=2.92543;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33975;QR=305846;RO=8563;RPL=0;RPP=2087.62;RPPR=18597.3;RPR=960;RUN=1;SAF=0;SAP=2087.62;SAR=960;SRF=0;SRP=18597.3;SRR=8563;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2702	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/0:181:181,0:181:6473:0:0:0,-54.4864,-582.654	0/0:262:261,1:261:9327:1:36:0,-75.2716,-835.796	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/0:57:56,1:56:2016:1:36:0,-13.5604,-178.115	0/0:75:74,1:74:2647:1:36:0,-18.979,-234.878	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/0:123:123,0:123:4371:0:0:0,-37.0267,-393.567	0/0:182:182,0:182:6473:0:0:0,-54.7875,-582.656	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:138:138,0:138:4906:0:0:0,-41.5421,-441.691	0/0:77:77,0:77:2725:0:0:0,-23.1793,-245.493	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:198:198,0:198:7091:0:0:0,-59.6039,-638.248	0/0:169:169,0:169:6040:0:0:0,-50.8741,-543.702	0/0:100:99,1:99:3537:1:36:0,-26.5047,-314.939	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:55:31,24:31:1104:24:832:-58.6373,0,-83.114	0/0:65:65,0:65:2319:0:0:0,-19.5669,-208.97	0/1:175:90,84:90:3220:84:2959:-213.803,0,-237.284	0/0:223:222,1:222:7951:1:32:0,-63.9304,-712.413	0/1:79:39,40:39:1378:40:1412:-103.593,0,-100.536	0/0:297:297,0:297:10618:0:0:0,-89.4059,-955.532	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/1:78:41,37:41:1472:37:1328:-96.3419,0,-109.296	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:5:2,3:2:72:3:99:-7.73143,0,-5.33157	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	0/0:306:305,0:305:10898:0:0:0,-91.8141,-979.869	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	.:.:.:.:.:.:.:.	0/1:80:35,45:35:1260:45:1608:-120.928,0,-89.6231	0/1:82:48,34:48:1724:34:1207:-84.2503,0,-130.761	0/0:114:114,0:114:4061:0:0:0,-34.3174,-365.677	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/0:150:150,0:150:5337:0:0:0,-45.1545,-480.465	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.52	0/1:249:114,135:114:4082:135:4783:-355.672,0,-292.608	0/0:238:237,1:237:8450:1:36:0,-68.0469,-756.905	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.273	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:71:24,47:24:860:47:1692:-131.194,0,-56.3487	0/0:64:64,0:64:2267:0:0:0,-19.2659,-204.29	0/1:16:4,12:4:144:12:423:-33.5886,0,-8.49714	0/1:261:155,106:155:5510:106:3753:-259.403,0,-417.458	0/0:28:27,1:27:964:1:32:0,-5.22953,-83.8775	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:125:125,0:125:4462:0:0:0,-37.6287,-401.75	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:368:367,0:367:13092:0:0:0,-110.478,-1177.82	0/0:109:104,5:104:3724:5:180:0,-16.2602,-318.809	0/1:36:21,15:21:752:15:536:-37.7377,0,-57.1692	0/0:153:153,0:153:5423:0:0:0,-46.0576,-488.203	0/0:158:157,1:157:5601:1:36:0,-43.9645,-500.614	0/0:107:106,1:106:3784:1:36:0,-28.6119,-337.159	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.714	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/1:24:9,15:9:324:15:531:-40.8972,0,-22.2811	0/0:94:94,0:94:3337:0:0:0,-28.2968,-300.548	0/1:189:82,107:82:2940:107:3754:-281.166,0,-207.939	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:204:204,0:204:7315:0:0:0,-61.4101,-658.398	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:88:87,1:87:3124:1:36:0,-22.8924,-277.787	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:199:197,2:197:7051:2:72:0,-53.0682,-627.814	0/1:66:38,28:38:1368:28:978:-68.4629,0,-103.553	0/0:261:261,0:261:9353:0:0:0,-78.5688,-841.729	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:108:108,0:108:3839:0:0:0,-32.5112,-345.706	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:165:165,0:165:5871:0:0:0,-49.6699,-528.502	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/1:100:51,49:51:1806:49:1730:-125.88,0,-132.717	0/0:88:88,0:88:3130:0:0:0,-26.4906,-281.926	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.323	0/1:134:60,74:60:2117:74:2607:-194.539,0,-150.459	0/1:109:36,73:36:1288:73:2603:-201.706,0,-83.4113	0/0:157:157,0:157:5632:0:0:0,-47.2617,-506.999	0/0:251:248,2:248:8809:2:72:0,-68.7806,-785.966
chr08	26839040	.	A	G	1290.06	PASS	AB=0.379433;ABP=38.6163;AC=14;AF=0.0744681;AN=188;AO=110;CIGAR=1X;DP=2565;DPB=2565;DPRA=0.701539;EPP=241.872;EPPR=5333.98;GTI=2;LEN=1;MEANALT=1;MQM=60;MQMR=59.9886;NS=94;NUMALT=1;ODDS=1.13008;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=3895;QR=87867;RO=2455;RPL=110;RPP=241.872;RPPR=5333.98;RPR=0;RUN=1;SAF=0;SAP=241.872;SAR=110;SRF=0;SRP=5333.98;SRR=2455;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6551	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.956	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:14:14,0:14:488:0:0:0,-4.21442,-44.2504	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:16:13,3:13:464:3:104:-4.88633,0,-37.281	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:36:23,13:23:824:13:468:-31.6226,0,-63.6462	0/0:40:40,0:40:1412:0:0:0,-12.0412,-127.375	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:13:5,8:5:176:8:284:-21.99,0,-12.2716	0/0:25:24,1:24:864:1:36:0,-3.92747,-74.4843	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.399	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:25:25,0:25:880:0:0:0,-7.52575,-79.5177	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/1:10:5,5:5:176:5:176:-13.1747,0,-13.1747	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.953	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:42:23,19:23:828:19:668:-47.8018,0,-62.2009	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:26:18,8:18:644:8:284:-18.0766,0,-50.4638	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:15:11,4:11:392:4:135:-7.96706,0,-31.1046	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0316	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:12:11,1:11:388:1:36:0,-0.0140849,-31.6591	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.136	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:25:24,1:24:852:1:36:0,-3.92747,-73.3988	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:43:33,10:33:1180:10:352:-19.0739,0,-93.5638	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:35:35,0:35:1242:0:0:0,-10.536,-112.083	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:19:6,13:6:216:13:460:-36.0158,0,-14.0709	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:107:107,0:107:3825:0:0:0,-32.2102,-344.445	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595
chr08	26839076	.	GTTTT	ATTTT,ATTTA	216213	PASS	AB=0.500383,0.498087;ABP=3.01196,3.05184;AC=164,22;AF=0.88172,0.11828;AN=186;AO=6946,675;CIGAR=1X4M,1X3M1X;DP=7642;DPB=7642;DPRA=23.9717,0.927906;EPP=30.0321,14.9807;EPPR=3.0103;GTI=5;LEN=1,5;MEANALT=1.53846,2.1875;MQM=59.9751,59.6193;MQMR=60;NS=93;NUMALT=2;ODDS=5.03192;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=247564,23603;QR=67;RO=2;RPL=0,0;RPP=15086.1,1468.75;RPPR=7.35324;RPR=6946,675;RUN=1,1;SAF=3326,368;SAP=30.0321,14.9807;SAR=3620,307;SRF=1;SRP=3.0103;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:74:0,74,0:0:0:74,0:2648,0:-238.558,-22.2762,0,-238.558,-22.2762,-238.558	1/1:78:0,78,0:0:0:78,0:2767,0:-249.27,-23.4803,0,-249.27,-23.4803,-249.27	1/1:143:0,143,0:0:0:143,0:5100,0:-459.143,-43.0473,0,-459.143,-43.0473,-459.143	1/1:118:0,118,0:0:0:118,0:4153,0:-373.952,-35.5215,0,-373.952,-35.5215,-373.952	1/1:87:0,87,0:0:0:87,0:3109,0:-280.035,-26.1896,0,-280.035,-26.1896,-280.035	1/1:85:0,85,0:0:0:85,0:3037,0:-273.559,-25.5876,0,-273.559,-25.5876,-273.559	1/1:81:0,81,0:0:0:81,0:2891,0:-260.426,-24.3834,0,-260.426,-24.3834,-260.426	1/1:135:1,133,0:1:36:133,0:4736,0:-422.854,-37.0447,0,-423.155,-40.037,-426.093	1/1:122:0,121,0:0:0:121,0:4304,0:-387.177,-36.4246,0,-387.177,-36.4246,-387.177	1/1:79:0,79,0:0:0:79,0:2832,0:-255.118,-23.7814,0,-255.118,-23.7814,-255.118	1/1:87:0,86,0:0:0:86,0:3080,0:-277.068,-25.8886,0,-277.068,-25.8886,-277.068	1/1:111:1,110,0:1:31:110,0:3936,0:-351.333,-30.3149,0,-351.634,-33.1133,-354.122	1/1:117:0,116,1:0:0:116,1:4141,36:-372.512,-34.9195,0,-369.574,-31.6222,-369.273	1/1:113:0,113,0:0:0:113,0:4016,0:-361.629,-34.0164,0,-361.629,-34.0164,-361.629	1/1:76:0,75,0:0:0:75,0:2696,0:-242.524,-22.5773,0,-242.524,-22.5773,-242.524	1/1:98:0,98,0:0:0:98,0:3456,0:-311.227,-29.5009,0,-311.227,-29.5009,-311.227	1/1:87:0,87,0:0:0:87,0:3073,0:-276.797,-26.1896,0,-276.797,-26.1896,-276.797	1/1:79:0,79,0:0:0:79,0:2814,0:-253.499,-23.7814,0,-253.499,-23.7814,-253.499	1/1:40:0,40,0:0:0:40,0:1433,0:-129.255,-12.0412,0,-129.255,-12.0412,-129.255	1/1:94:0,94,0:0:0:94,0:3332,0:-300.098,-28.2968,0,-300.098,-28.2968,-300.098	1/1:115:0,113,1:0:0:113,1:4009,35:-360.672,-34.0164,0,-357.824,-31.1448,-357.523	1/1:47:0,47,0:0:0:47,0:1682,0:-151.667,-14.1484,0,-151.667,-14.1484,-151.667	1/1:58:0,58,0:0:0:58,0:2052,0:-184.949,-17.4597,0,-184.949,-17.4597,-184.949	1/2:64:0,36,28:0:0:36,28:1269,980:-183.399,-80.0764,-69.2393,-103.674,0,-95.2448	1/1:83:0,82,0:0:0:82,0:2929,0:-263.552,-24.6845,0,-263.552,-24.6845,-263.552	1/2:161:0,84,77:0:0:84,77:3004,2646:-460.163,-215.208,-189.921,-245.305,0,-222.126	1/1:192:0,191,1:0:0:191,1:6832,36:-614.589,-57.4967,0,-611.651,-54.1995,-611.35	1/2:42:0,14,28:0:0:14,28:504,988:-121.93,-80.8038,-76.5894,-41.4837,0,-33.0548	1/1:141:0,141,0:0:0:141,0:5017,0:-451.677,-42.4452,0,-451.677,-42.4452,-451.677	1/1:76:0,74,2:0:0:74,2:2632,72:-236.768,-22.2762,0,-230.893,-16.0416,-230.291	1/2:87:0,48,39:0:0:48,39:1705,1370:-250.782,-111.851,-97.4012,-139.284,0,-127.544	1/2:4:0,3,1:0:0:3,1:104,31:-11.279,-2.79842,-1.89533,-8.79971,0,-8.49868	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	2/2:2:0,0,2:0:0:0,2:0,68:-6.45788,-6.45788,-6.45788,-0.60206,-0.60206,0	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:220:0,219,0:0:0:219,0:7815,0:-703.108,-65.9256,0,-703.108,-65.9256,-703.108	1/1:67:0,66,1:0:0:66,1:2345,36:-210.948,-19.868,0,-208.011,-16.5707,-207.71	1/1:58:0,58,0:0:0:58,0:2088,0:-188.19,-17.4597,0,-188.19,-17.4597,-188.19	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:103:0,60,43:0:0:60,43:2124,1519:-297.054,-124.043,-105.981,-173.364,0,-160.42	1/2:54:0,29,25:0:0:29,25:1021,885:-155.544,-72.4266,-63.6967,-83.4704,0,-75.9446	1/1:129:0,129,0:0:0:129,0:4620,0:-415.963,-38.8329,0,-415.963,-38.8329,-415.963	1/1:114:0,114,0:0:0:114,0:4091,0:-368.374,-34.3174,0,-368.374,-34.3174,-368.374	1/1:86:0,86,0:0:0:86,0:3088,0:-278.147,-25.8886,0,-278.147,-25.8886,-278.147	1/1:78:0,78,0:0:0:78,0:2761,0:-248.731,-23.4803,0,-248.731,-23.4803,-248.731	1/1:112:0,112,0:0:0:112,0:3999,0:-360.1,-33.7154,0,-360.1,-33.7154,-360.1	1/2:92:0,52,40:0:0:52,40:1864,1408:-267.006,-114.975,-99.3216,-152.386,0,-140.345	1/1:76:0,76,0:0:0:76,0:2685,0:-241.892,-22.8783,0,-241.892,-22.8783,-241.892	1/1:80:0,78,1:0:0:78,1:2781,36:-250.199,-23.4803,0,-247.262,-20.513,-246.961	1/1:54:0,52,1:0:0:52,1:1822,26:-163.984,-15.6536,0,-161.947,-13.6247,-161.646	.:.:.:.:.:.:.:.	1/2:119:0,68,51:0:0:68,51:2425,1788:-343.527,-145.846,-125.376,-198.034,0,-182.682	1/1:38:0,37,1:0:0:37,1:1322,36:-118.922,-11.1381,0,-115.985,-7.84087,-115.684	2/2:5:0,0,5:0:0:0,5:0,173:-15.9098,-15.9098,-15.9098,-1.50515,-1.50515,0	1/2:93:0,50,43:0:0:50,43:1792,1509:-269.315,-123.158,-108.107,-146.511,0,-133.567	1/1:30:0,30,0:0:0:30,0:1068,0:-96.4321,-9.0309,0,-96.4321,-9.0309,-96.4321	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:67:0,67,0:0:0:67,0:2377,0:-214.176,-20.169,0,-214.176,-20.169,-214.176	1/1:95:0,95,0:0:0:95,0:3408,0:-306.934,-28.5979,0,-306.934,-28.5979,-306.934	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:108:0,107,0:0:0:107,0:3802,0:-342.027,-32.2102,0,-342.027,-32.2102,-342.027	1/1:124:0,119,3:0:0:119,3:4245,103:-381.583,-35.8226,0,-373.22,-27.4003,-372.317	1/2:48:0,21,27:0:0:21,27:752,939:-138.016,-76.6852,-70.3636,-61.6846,0,-53.5568	1/1:71:0,71,0:0:0:71,0:2539,0:-228.76,-21.3731,0,-228.76,-21.3731,-228.76	1/1:126:0,123,3:0:0:123,3:4398,95:-395.672,-37.0267,0,-388.187,-29.2296,-387.284	1/1:87:0,87,0:0:0:87,0:3091,0:-278.416,-26.1896,0,-278.416,-26.1896,-278.416	1/1:57:0,56,0:0:0:56,0:2005,0:-180.442,-16.8577,0,-180.442,-16.8577,-180.442	1/1:54:0,53,1:0:0:53,1:1904,36:-171.278,-15.9546,0,-168.34,-12.6573,-168.039	1/1:98:0,98,0:0:0:98,0:3484,0:-313.771,-29.5009,0,-313.771,-29.5009,-313.771	1/2:29:0,15,14:0:0:15,14:527,491:-83.1686,-40.2746,-35.7591,-43.2447,0,-39.0303	1/1:56:0,56,0:0:0:56,0:2004,0:-180.625,-16.8577,0,-180.625,-16.8577,-180.625	1/2:69:0,38,31:0:0:38,31:1360,1060:-197.276,-86.364,-74.9248,-111.261,0,-101.93	1/1:145:0,143,1:0:0:143,1:5090,30:-457.987,-43.0473,0,-455.589,-40.6037,-455.288	1/1:89:0,89,0:0:0:89,0:3184,0:-286.784,-26.7917,0,-286.784,-26.7917,-286.784	1/1:154:0,153,0:0:0:153,0:5461,0:-491.366,-46.0576,0,-491.366,-46.0576,-491.366	1/1:139:0,139,0:0:0:139,0:4950,0:-445.649,-41.8432,0,-445.649,-41.8432,-445.649	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:88:0,88,0:0:0:88,0:3107,0:-279.855,-26.4906,0,-279.855,-26.4906,-279.855	1/2:86:0,32,52:0:0:32,52:1148,1839:-243.383,-149.743,-140.11,-93.6794,0,-78.0258	1/1:106:0,106,0:0:0:106,0:3774,0:-339.86,-31.9092,0,-339.86,-31.9092,-339.86	1/1:93:0,93,0:0:0:93,0:3340,0:-300.816,-27.9958,0,-300.816,-27.9958,-300.816	1/1:81:0,80,0:0:0:80,0:2872,0:-258.357,-24.0824,0,-258.357,-24.0824,-258.357	1/1:91:0,91,0:0:0:91,0:3245,0:-292.27,-27.3937,0,-292.27,-27.3937,-292.27	1/1:138:0,137,0:0:0:137,0:4872,0:-438.384,-41.2411,0,-438.384,-41.2411,-438.384	1/1:32:0,32,0:0:0:32,0:1130,0:-102.007,-9.63296,0,-102.007,-9.63296,-102.007	1/2:76:0,36,40:0:0:36,40:1279,1417:-220.001,-115.78,-104.943,-104.575,0,-92.5342	1/1:110:0,110,0:0:0:110,0:3925,0:-353.442,-33.1133,0,-353.442,-33.1133,-353.442	1/1:48:0,48,0:0:0:48,0:1711,0:-154.275,-14.4494,0,-154.275,-14.4494,-154.275	1/2:88:0,46,42:0:0:46,42:1652,1477:-255.196,-120.434,-106.587,-135.116,0,-122.473	1/2:87:0,18,69:0:0:18,69:640,2402:-247.749,-195.592,-190.173,-52.5108,0,-31.7397	1/1:117:0,117,0:0:0:117,0:4152,0:-373.864,-35.2205,0,-373.864,-35.2205,-373.864	1/1:164:0,164,0:0:0:164,0:5840,0:-525.711,-49.3689,0,-525.711,-49.3689,-525.711
chr08	27164461	.	T	C	225362	PASS	AB=0.47644;ABP=11.2983;AC=165;AF=0.87766;AN=188;AO=7969;CIGAR=1X;DP=8890;DPB=8890;DPRA=11.9382;EPP=5.16869;EPPR=22.9878;GTI=1;LEN=1;MEANALT=1.01075;MQM=54.1038;MQMR=59.9957;NS=94;NUMALT=1;ODDS=9.10252;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284376;QR=32923;RO=920;RPL=18;RPP=17151.5;RPPR=1948.99;RPR=7951;RUN=1;SAF=4047;SAP=7.26796;SAR=3922;SRF=512;SRP=28.5393;SRR=408;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1382:-124.391,-11.7402,0	1/1:102:0,102:0:0:102:3638:-325.421,-30.7051,0	1/1:166:0,166:0:0:166:5913:-530.179,-49.971,0	1/1:151:0,151:0:0:151:5396:-484.244,-45.4555,0	1/1:55:1,54:1:36:54:1927:-169.445,-12.9584,0	1/1:44:0,44:0:0:44:1567:-138.787,-13.2453,0	1/1:48:0,48:0:0:48:1724:-154.575,-14.4494,0	1/1:131:0,131:0:0:131:4631:-414.442,-39.4349,0	1/1:145:2,143:2:72:143:5115:-451.499,-36.8126,0	1/1:111:1,110:1:36:110:3936:-349.996,-29.8161,0	1/1:93:0,93:0:0:93:3324:-297.867,-27.9958,0	1/1:153:0,153:0:0:153:5458:-487.951,-46.0576,0	1/1:144:0,144:0:0:144:5167:-460.316,-43.3483,0	1/1:133:0,133:0:0:133:4713:-419.567,-40.037,0	1/1:141:1,140:1:36:140:4983:-442.967,-38.847,0	1/1:88:0,88:0:0:88:3128:-279.737,-26.4906,0	1/1:115:0,115:0:0:115:4098:-365.351,-34.6185,0	1/1:102:0,102:0:0:102:3648:-324.683,-30.7051,0	1/1:57:0,57:0:0:57:2036:-182.065,-17.1587,0	1/1:152:1,151:1:36:151:5405:-481.851,-42.1583,0	1/1:140:0,140:0:0:140:4981:-445.868,-42.1442,0	1/1:35:0,35:0:0:35:1256:-113.122,-10.5361,0	1/1:77:0,77:0:0:77:2743:-246.209,-23.1793,0	0/1:47:18,29:18:648:29:1044:-79.4134,0,-44.5035	1/1:75:0,75:0:0:75:2663:-239.51,-22.5773,0	0/1:207:104,103:104:3723:103:3668:-267.538,0,-272.957	1/1:221:0,221:0:0:221:7871:-706.06,-66.5276,0	0/1:71:40,31:40:1440:31:1091:-76.6902,0,-108.525	1/1:205:0,205:0:0:205:7304:-655.322,-61.7112,0	1/1:59:3,56:3:108:56:2008:-169.883,-7.6856,0	0/1:82:43,39:43:1540:39:1392:-100.614,0,-114.209	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:10:0,10:0:0:10:360:-32.3124,-3.0103,0	0/1:4:3,1:3:108:1:36:-2.3545,0,-8.87105	1/1:6:0,6:0:0:6:216:-19.7542,-1.80618,0	0/1:11:5,6:5:180:6:216:-16.4428,0,-13.2407	1/1:293:0,293:0:0:293:10451:-937.21,-88.2018,0	1/1:44:1,43:1:36:43:1530:-133.056,-9.64705,0	1/1:96:0,96:0:0:96:3452:-307.88,-28.8989,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:112:65,47:65:2332:47:1684:-117.589,0,-176.424	0/1:66:31,35:31:1108:35:1252:-92.7267,0,-80.163	1/1:54:0,54:0:0:54:1911:-171.792,-16.2556,0	1/1:127:0,127:0:0:127:4519:-405.36,-38.2308,0	1/1:126:0,126:0:0:126:4461:-400.195,-37.9298,0	1/1:57:0,57:0:0:57:2040:-183.82,-17.1587,0	1/1:110:0,110:0:0:110:3926:-350.855,-33.1133,0	0/1:126:64,62:64:2287:62:2211:-160.785,0,-168.161	1/1:82:0,82:0:0:82:2923:-262.091,-24.6845,0	1/1:93:0,93:0:0:93:3314:-297.602,-27.9958,0	1/1:68:0,68:0:0:68:2430:-218.586,-20.47,0	0/1:4:3,1:3:108:1:36:-2.37893,0,-8.87105	0/1:123:59,64:59:2120:64:2295:-168.412,0,-154.042	0/1:65:35,30:35:1256:30:1067:-76.7209,0,-93.7783	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:127:72,55:72:2547:55:1955:-137.315,0,-191.248	1/1:39:0,39:0:0:39:1400:-126.052,-11.7402,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:284:-25.524,-2.40824,0	1/1:72:0,72:0:0:72:2546:-228.561,-21.6742,0	1/1:147:0,147:0:0:147:5247:-469.788,-44.2514,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:88:0,88:0:0:88:3127:-281.376,-26.4906,0	1/1:102:2,100:2:72:100:3569:-313.854,-23.8683,0	0/1:63:38,25:38:1356:25:888:-60.9506,0,-103.376	1/1:80:0,80:0:0:80:2863:-257.1,-24.0824,0	1/1:145:0,145:0:0:145:5176:-464.882,-43.6494,0	1/1:86:0,86:0:0:86:3076:-276.017,-25.8886,0	1/1:43:0,43:0:0:43:1544:-137.937,-12.9443,0	1/1:58:0,58:0:0:58:2079:-185.598,-17.4597,0	1/1:126:0,126:0:0:126:4517:-404.916,-37.9298,0	0/1:24:14,10:14:489:10:349:-24.5013,0,-37.1142	1/1:77:0,77:0:0:77:2748:-247.079,-23.1793,0	0/1:102:44,58:44:1580:58:2074:-154.956,0,-111.786	1/1:152:0,152:0:0:152:5421:-485.478,-45.7566,0	1/1:114:0,114:0:0:114:4084:-367.245,-34.3174,0	1/1:92:0,92:0:0:92:3271:-292.353,-27.6948,0	1/1:109:0,109:0:0:109:3895:-347.964,-32.8123,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:116:0,116:0:0:116:4168:-373.637,-34.9195,0	0/1:142:68,74:68:2444:74:2627:-193.258,0,-177.468	1/1:202:0,202:0:0:202:7239:-649.646,-60.8081,0	1/1:120:0,120:0:0:120:4304:-385.565,-36.1236,0	1/1:125:0,125:0:0:125:4470:-401.193,-37.6288,0	1/1:111:0,111:0:0:111:3948:-353.103,-33.4143,0	1/1:237:0,237:0:0:237:8469:-758.741,-71.3441,0	1/1:49:0,49:0:0:49:1760:-156.684,-14.7505,0	0/1:111:54,57:54:1932:57:2028:-148.307,0,-140.742	1/1:126:0,125:0:0:125:4470:-398.672,-37.6288,0	1/1:86:0,86:0:0:86:3046:-272.775,-25.8886,0	0/1:120:65,55:65:2328:55:1961:-138.932,0,-173.655	0/1:107:72,35:72:2569:35:1244:-79.3269,0,-199.248	1/1:88:0,88:0:0:88:3127:-281.322,-26.4906,0	1/1:185:0,185:0:0:185:6638:-595.287,-55.6906,0
chr08	27164478	.	C	T	220938	PASS	AB=0.473005;ABP=13.7963;AC=165;AF=0.87766;AN=188;AO=7853;CIGAR=1X;DP=8782;DPB=8782;DPRA=13.4793;EPP=17029.5;EPPR=2015.97;GTI=1;LEN=1;MEANALT=1.02151;MQM=54.0833;MQMR=59.9978;NS=94;NUMALT=1;ODDS=10.2828;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279772;QR=33041;RO=927;RPL=3977;RPP=5.83103;RPPR=31.8719;RPR=3876;RUN=1;SAF=3976;SAP=5.72042;SAR=3877;SRF=519;SRP=31.8719;SRR=408;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1404:-126.332,-12.0412,0	1/1:102:0,102:0:0:102:3644:-325.942,-30.7051,0	1/1:167:1,166:1:36:166:5897:-525.292,-46.6737,0	1/1:152:0,152:0:0:152:5394:-484.003,-45.7566,0	1/1:55:1,54:1:36:54:1927:-169.454,-12.9584,0	1/1:42:0,42:0:0:42:1481:-132.522,-12.6433,0	1/1:51:0,51:0:0:51:1816:-163.249,-15.3525,0	1/1:127:0,127:0:0:127:4554:-406.381,-38.2308,0	1/1:146:2,144:2:72:144:5136:-453.44,-37.1137,0	1/1:111:0,111:0:0:111:3951:-354.985,-33.4143,0	1/1:90:0,90:0:0:90:3224:-289.054,-27.0927,0	1/1:152:0,152:0:0:152:5419:-484.287,-45.7566,0	1/1:136:2,134:2:63:134:4794:-420.768,-34.9569,0	1/1:131:0,131:0:0:131:4659:-415.217,-39.4349,0	1/1:137:1,136:1:36:136:4831:-429.346,-37.6428,0	1/1:82:0,82:0:0:82:2946:-263.516,-24.6845,0	1/1:114:0,114:0:0:114:4061:-362.406,-34.3174,0	1/1:102:0,102:0:0:102:3618:-322.718,-30.7051,0	1/1:55:2,53:2:72:53:1892:-162.317,-9.71993,0	1/1:149:1,148:1:36:148:5261:-468.927,-41.2552,0	1/1:140:2,138:2:72:138:4898:-431.61,-35.3075,0	1/1:36:0,36:0:0:36:1280:-115.285,-10.8371,0	1/1:77:0,77:0:0:77:2737:-245.625,-23.1793,0	0/1:49:18,31:18:648:31:1094:-83.5121,0,-43.9014	1/1:78:0,78:0:0:78:2755:-247.758,-23.4803,0	0/1:206:104,102:104:3715:102:3642:-265.466,0,-272.539	1/1:219:0,219:0:0:219:7782:-698.059,-65.9256,0	0/1:72:42,30:42:1508:30:1063:-73.5889,0,-114.34	1/1:197:0,197:0:0:197:7023:-631.412,-59.3029,0	1/1:57:3,54:3:108:54:1909:-161.315,-7.08354,0	0/1:77:40,37:40:1417:37:1328:-96.3754,0,-104.646	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:10:0,10:0:0:10:344:-31.2707,-3.0103,0	0/1:4:3,1:3:108:1:36:-2.3545,0,-8.87105	1/1:6:0,6:0:0:6:207:-18.9305,-1.80618,0	0/1:11:5,6:5:180:6:216:-16.4428,0,-13.2407	1/1:287:0,287:0:0:287:10248:-919.067,-86.3956,0	1/1:44:1,43:1:36:43:1539:-132.926,-9.64705,0	1/1:96:0,96:0:0:96:3423:-305.584,-28.8989,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:114:67,47:67:2395:47:1688:-117.343,0,-181.489	0/1:67:31,36:31:1084:36:1277:-94.631,0,-77.6971	1/1:53:0,53:0:0:53:1900:-170.803,-15.9546,0	1/1:129:0,129:0:0:129:4608:-413.311,-38.8329,0	1/1:127:0,127:0:0:127:4537:-407.208,-38.2308,0	1/1:55:0,55:0:0:55:1957:-176.355,-16.5567,0	1/1:109:0,109:0:0:109:3839:-343.56,-32.8123,0	0/1:125:65,60:65:2321:60:2113:-152.305,0,-171.52	1/1:80:0,80:0:0:80:2851:-255.552,-24.0824,0	1/1:93:0,93:0:0:93:3336:-299.564,-27.9958,0	1/1:69:0,69:0:0:69:2437:-219.248,-20.7711,0	0/1:4:3,1:3:108:1:36:-2.37893,0,-8.87105	0/1:120:60,60:60:2134:60:2103:-152.64,0,-156.203	0/1:65:35,30:35:1260:30:1065:-76.5274,0,-94.1385	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:124:72,52:72:2565:52:1860:-129.676,0,-193.771	1/1:37:0,37:0:0:37:1328:-119.589,-11.1381,0	1/1:4:0,4:0:0:4:136:-12.573,-1.20412,0	1/1:8:0,8:0:0:8:288:-25.8831,-2.40824,0	1/1:74:0,74:0:0:74:2645:-237.353,-22.2762,0	1/1:147:0,147:0:0:147:5255:-470.925,-44.2514,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:82:0,82:0:0:82:2888:-259.916,-24.6845,0	1/1:102:2,100:2:72:100:3584:-315.041,-23.8683,0	0/1:59:35,24:35:1248:24:830:-56.9806,0,-94.8641	1/1:81:0,81:0:0:81:2894:-259.996,-24.3834,0	1/1:142:2,140:2:72:140:4955:-437.774,-35.9095,0	1/1:87:1,86:1:36:86:3055:-270.623,-22.5913,0	1/1:43:0,43:0:0:43:1548:-138.284,-12.9443,0	1/1:58:0,58:0:0:58:2080:-185.145,-17.4597,0	1/1:124:0,124:0:0:124:4428:-397.078,-37.3277,0	0/1:23:14,9:14:500:9:320:-22.1909,0,-38.4125	1/1:73:0,73:0:0:73:2615:-235.128,-21.9752,0	0/1:105:44,61:44:1572:61:2177:-162.44,0,-110.163	1/1:151:0,151:0:0:151:5378:-481.918,-45.4555,0	1/1:110:0,110:0:0:110:3910:-351.486,-33.1133,0	1/1:91:0,91:0:0:91:3241:-290.721,-27.3937,0	1/1:111:0,111:0:0:111:3944:-352.438,-33.4143,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:114:0,114:0:0:114:4037:-362.04,-34.3174,0	0/1:143:70,73:70:2490:73:2620:-192.249,0,-181.305	1/1:198:0,198:0:0:198:7066:-634.259,-59.6039,0	1/1:121:0,121:0:0:121:4343:-388.892,-36.4246,0	1/1:120:0,120:0:0:120:4290:-385.035,-36.1236,0	1/1:112:0,112:0:0:112:3987:-356.654,-33.7154,0	1/1:235:0,235:0:0:235:8378:-750.542,-70.7421,0	1/1:48:0,48:0:0:48:1716:-152.838,-14.4494,0	0/1:113:55,58:55:1951:58:2075:-151.8,0,-141.849	1/1:123:1,121:1:36:121:4332:-383.212,-33.4852,0	1/1:85:0,85:0:0:85:2992:-267.522,-25.5876,0	0/1:116:62,54:62:2196:54:1923:-136.69,0,-162.983	0/1:103:70,33:70:2498:33:1184:-75.1539,0,-194.066	1/1:85:0,85:0:0:85:3034:-272.945,-25.5876,0	1/1:174:0,173:0:0:173:6216:-557.036,-52.0782,0
chr08	27164502	.	C	T	221771	PASS	AB=0.480894;ABP=8.40387;AC=165;AF=0.87766;AN=188;AO=7874;CIGAR=1X;DP=8784;DPB=8784;DPRA=13.4823;EPP=3.3291;EPPR=26.0289;GTI=1;LEN=1;MEANALT=1.04301;MQM=54.0486;MQMR=59.9978;NS=94;NUMALT=1;ODDS=3.4832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=280812;QR=32212;RO=906;RPL=7874;RPP=17101.2;RPPR=1970.36;RPR=0;RUN=1;SAF=3954;SAP=3.3291;SAR=3920;SRF=502;SRP=26.0289;SRR=404;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1424:-128.135,-12.0412,0	1/1:101:3,98:3:108:98:3520:-304.412,-20.3289,0	1/1:166:0,166:0:0:166:5932:-531.673,-49.971,0	1/1:153:0,153:0:0:153:5470:-490.442,-46.0576,0	1/1:53:1,52:1:36:52:1860:-163.665,-12.3563,0	1/1:42:0,42:0:0:42:1474:-130.863,-12.6433,0	1/1:50:0,50:0:0:50:1783:-160.483,-15.0515,0	1/1:127:0,127:0:0:127:4528:-404.706,-38.2308,0	1/1:141:2,139:2:72:139:4962:-437.849,-35.6085,0	1/1:112:0,112:0:0:112:3940:-353.98,-33.7154,0	1/1:90:0,90:0:0:90:3220:-288.508,-27.0927,0	1/1:150:0,150:0:0:150:5356:-478.926,-45.1545,0	1/1:138:1,136:1:36:136:4864:-429.282,-38.0007,0	1/1:127:0,127:0:0:127:4501:-402.209,-38.2308,0	1/1:137:1,136:1:36:136:4850:-430.968,-37.6428,0	1/1:89:0,89:0:0:89:3173:-283.859,-26.7917,0	1/1:115:0,115:0:0:115:4124:-367.603,-34.6185,0	1/1:104:0,104:0:0:104:3728:-331.822,-31.3071,0	1/1:55:0,55:0:0:55:1968:-175.948,-16.5567,0	1/1:152:1,151:1:36:151:5374:-479.03,-42.1583,0	1/1:138:0,138:0:0:138:4918:-440.399,-41.5421,0	1/1:37:0,36:0:0:36:1288:-115.671,-10.8371,0	1/1:78:0,78:0:0:78:2768:-247.887,-23.4803,0	0/1:49:18,31:18:648:31:1108:-84.5361,0,-43.9014	1/1:71:0,71:0:0:71:2538:-228.252,-21.3731,0	0/1:210:106,103:106:3740:103:3656:-265.522,0,-273.528	1/1:213:0,213:0:0:213:7584:-680.521,-64.1194,0	0/1:71:40,31:40:1436:31:1112:-78.2696,0,-108.165	1/1:202:0,202:0:0:202:7203:-646.787,-60.8081,0	1/1:58:3,55:3:104:55:1952:-165.513,-7.75693,0	0/1:79:41,38:41:1453:38:1364:-98.9898,0,-107.283	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:4:3,1:3:108:1:36:-2.3545,0,-8.87105	1/1:6:0,6:0:0:6:216:-19.7542,-1.80618,0	0/1:11:5,6:5:180:6:216:-16.4428,0,-13.2407	1/1:289:0,289:0:0:289:10314:-924.362,-86.9977,0	1/1:41:1,40:1:36:40:1413:-123.024,-8.74396,0	1/1:94:0,94:0:0:94:3360:-299.726,-28.2968,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:112:63,49:63:2230:49:1745:-123.061,0,-167.248	0/1:68:32,36:32:1152:36:1275:-94.1638,0,-83.5201	1/1:52:0,52:0:0:52:1860:-167.2,-15.6536,0	1/1:126:0,126:0:0:126:4503:-403.955,-37.9298,0	1/1:127:0,127:0:0:127:4548:-407.976,-38.2308,0	1/1:57:0,57:0:0:57:2027:-182.65,-17.1587,0	1/1:110:0,110:0:0:110:3936:-351.673,-33.1133,0	0/1:127:64,63:64:2275:63:2220:-161.192,0,-166.781	1/1:82:0,82:0:0:82:2918:-261.738,-24.6845,0	1/1:91:0,91:0:0:91:3240:-290.96,-27.3937,0	1/1:67:0,67:0:0:67:2403:-216.156,-20.169,0	0/1:4:3,1:3:108:1:36:-2.37893,0,-8.87105	0/1:121:59,62:59:2100:62:2212:-161.657,0,-152.845	0/1:65:35,30:35:1233:30:1076:-77.5205,0,-91.7051	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:119:67,52:67:2336:52:1843:-129.691,0,-174.674	1/1:39:0,39:0:0:39:1396:-125.7,-11.7402,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:252:-22.6579,-2.10721,0	1/1:70:0,70:0:0:70:2500:-224.378,-21.0721,0	1/1:145:1,144:1:36:144:5137:-456.271,-40.0511,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:87:0,87:0:0:87:3097:-278.582,-26.1896,0	1/1:103:2,101:2:72:101:3595:-315.996,-24.1694,0	0/1:62:36,26:36:1281:26:932:-65.1981,0,-96.9274	1/1:81:0,81:0:0:81:2889:-259.334,-24.3834,0	1/1:144:0,144:0:0:144:5112:-458.455,-43.3483,0	1/1:88:0,88:0:0:88:3124:-280.48,-26.4906,0	1/1:43:0,43:0:0:43:1536:-137.217,-12.9443,0	1/1:59:0,59:0:0:59:2095:-186.656,-17.7608,0	1/1:123:0,123:0:0:123:4380:-392.71,-37.0267,0	0/1:23:13,10:13:464:10:360:-25.7929,0,-35.1738	1/1:74:0,74:0:0:74:2621:-235.709,-22.2762,0	0/1:103:41,61:41:1468:61:2177:-163.006,0,-101.351	1/1:152:0,152:0:0:152:5420:-485.409,-45.7566,0	1/1:111:0,111:0:0:111:3972:-357.14,-33.4143,0	1/1:89:0,89:0:0:89:3169:-283.757,-26.7917,0	1/1:111:0,111:0:0:111:3988:-355.982,-33.4143,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:117:0,117:0:0:117:4200:-376.502,-35.2205,0	0/1:144:71,73:71:2528:73:2570:-187.56,0,-184.424	1/1:198:0,198:0:0:198:7021:-630.355,-59.6039,0	1/1:121:0,121:0:0:121:4320:-386.877,-36.4246,0	1/1:119:1,118:1:36:118:4244:-377.276,-32.2243,0	1/1:111:0,111:0:0:111:3983:-356.395,-33.4143,0	1/1:235:0,235:0:0:235:8374:-749.72,-70.7421,0	1/1:49:0,49:0:0:49:1748:-155.625,-14.7505,0	0/1:110:53,57:53:1900:57:2040:-149.541,0,-138.165	1/1:125:0,125:0:0:125:4468:-398.793,-37.6288,0	1/1:85:1,84:1:36:84:2991:-263.976,-21.9893,0	0/1:114:62,52:62:2212:52:1864:-132.007,0,-165.028	0/1:102:67,35:67:2392:35:1243:-80.7249,0,-184.832	1/1:87:0,87:0:0:87:3099:-278.799,-26.1896,0	1/1:182:0,182:0:0:182:6480:-581.147,-54.7875,0
chr08	27164660	.	G	A	12434.4	PASS	AB=0.49637;ABP=3.18373;AC=20;AF=0.107527;AN=186;AO=760;CIGAR=1X;DP=7781;DPB=7781;DPRA=0.962032;EPP=1653.33;EPPR=15220.7;GTI=0;LEN=1;MEANALT=1.04;MQM=60;MQMR=59.9991;NS=93;NUMALT=1;ODDS=3.54843;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27099;QR=248717;RO=7012;RPL=0;RPP=1653.33;RPPR=15220.7;RPR=760;RUN=1;SAF=0;SAP=1653.33;SAR=760;SRF=0;SRP=15229.4;SRR=7012;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:211:210,0:210:7419:0:0:0,-63.2163,-667.403	0/0:108:108,0:108:3807:0:0:0,-32.5112,-342.827	0/0:173:173,0:173:6104:0:0:0,-52.0782,-549.465	0/0:52:52,0:52:1838:0:0:0,-15.6536,-165.697	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:120:119,0:119:4215:0:0:0,-35.8226,-379.172	0/0:187:186,0:186:6527:0:0:0,-55.9916,-587.16	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:88:88,0:88:3139:0:0:0,-26.4906,-282.736	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.044	0/0:67:67,0:67:2369:0:0:0,-20.169,-213.467	0/0:70:70,0:70:2479:0:0:0,-21.0721,-223.361	0/0:73:73,0:73:2571:0:0:0,-21.9752,-231.639	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/0:60:60,0:60:2134:0:0:0,-18.0618,-192.327	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/0:225:224,0:224:7967:0:0:0,-67.4307,-716.694	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.927	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/0:119:119,0:119:4230:0:0:0,-35.8226,-380.882	0/1:75:35,40:35:1252:40:1423:-105.789,0,-90.4078	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:236:122,114:122:4331:114:4087:-296.971,0,-318.923	0/0:95:95,0:95:3366:0:0:0,-28.5978,-303.158	0/1:52:14,38:14:500:38:1355:-106.596,0,-29.6826	0/0:248:248,0:248:8787:0:0:0,-74.6554,-790.826	0/0:130:127,3:127:4524:3:108:0,-29.0587,-397.252	0/1:119:58,61:58:2026:61:2157:-158.572,0,-146.787	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:193:193,0:193:6814:0:0:0,-58.0988,-613.337	0/0:163:162,0:162:5765:0:0:0,-48.7669,-518.608	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:67:33,34:33:1179:34:1220:-89.9378,0,-86.2482	0/1:40:19,21:19:680:21:738:-54.7014,0,-49.488	0/0:89:89,0:89:3177:0:0:0,-26.7917,-286.153	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:68:67,1:67:2340:1:36:0,-16.8718,-207.258	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.655	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/1:141:68,73:68:2432:73:2610:-192.703,0,-176.69	0/0:85:85,0:85:3024:0:0:0,-25.5875,-272.389	0/0:131:131,0:131:4661:0:0:0,-39.4349,-419.65	0/0:102:101,0:101:3573:0:0:0,-30.404,-321.417	0/1:7:4,3:4:136:3:108:-7.96796,0,-10.4683	0/1:149:66,83:66:2355:83:2962:-221.959,0,-167.355	0/1:46:19,27:19:680:27:968:-73.59,0,-47.6818	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:97:46,51:46:1601:51:1809:-133.89,0,-115.175	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:72:72,0:72:2559:0:0:0,-21.6742,-230.56	0/0:128:127,1:127:4504:1:36:0,-34.9336,-401.932	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:159:159,0:159:5660:0:0:0,-47.8638,-509.521	0/0:138:135,2:135:4730:2:72:0,-34.7642,-419.025	0/1:79:50,29:50:1781:29:1035:-69.6817,0,-136.789	0/0:77:76,0:76:2713:0:0:0,-22.8783,-244.052	0/0:157:157,0:157:5587:0:0:0,-47.2617,-502.954	0/0:111:110,0:110:3879:0:0:0,-33.1133,-348.945	0/0:23:23,0:23:798:0:0:0,-6.92369,-72.1341	0/0:86:86,0:86:3069:0:0:0,-25.8886,-276.437	0/0:98:98,0:98:3429:0:0:0,-29.5009,-308.826	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/1:41:22,19:22:788:19:645:-46.0234,0,-58.9026	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.405	0/0:169:169,0:169:6002:0:0:0,-50.8741,-540.282	0/0:54:53,1:53:1869:1:36:0,-12.6573,-164.886	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:120:120,0:120:4211:0:0:0,-36.1236,-379.171	0/1:102:64,38:64:2287:38:1351:-91.1845,0,-175.386	0/0:135:135,0:135:4773:0:0:0,-40.639,-429.727	0/0:135:135,0:135:4800:0:0:0,-40.639,-432.157	0/0:50:50,0:50:1754:0:0:0,-15.0515,-158.14	0/0:79:79,0:79:2775:0:0:0,-23.7814,-249.991	0/0:137:137,0:137:4885:0:0:0,-41.2411,-439.803	0/0:55:55,0:55:1963:0:0:0,-16.5566,-176.945	0/1:78:35,43:35:1229:43:1548:-116.133,0,-87.4313	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.564	0/0:44:44,0:44:1554:0:0:0,-13.2453,-140.15	0/1:100:64,36:64:2255:36:1287:-86.0298,0,-173.108	0/1:59:30,29:30:1080:29:1040:-76.1536,0,-79.7525	0/0:130:130,0:130:4562:0:0:0,-39.1339,-410.747	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.451
chr08	27469825	.	A	C	9213.53	PASS	AB=0.436993;ABP=49.8018;AC=22;AF=0.119565;AN=184;AO=608;CIGAR=1X;DP=7134;DPB=7134;DPRA=1.10403;EPP=1323.27;EPPR=14163.2;GTI=2;LEN=1;MEANALT=1.03704;MQM=59.9868;MQMR=59.9937;NS=92;NUMALT=1;ODDS=2.63513;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21712;QR=233661;RO=6525;RPL=0;RPP=1323.27;RPPR=14163.2;RPR=608;RUN=1;SAF=608;SAP=1323.27;SAR=0;SRF=6525;SRP=14171.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:116:116,0:116:4141:0:0:0,-34.9195,-372.873	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:120:120,0:120:4278:0:0:0,-36.1236,-385.193	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:69:69,0:69:2454:0:0:0,-20.7711,-221.111	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.56	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:96:96,0:96:3429:0:0:0,-28.8989,-308.822	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:94:94,0:94:3384:0:0:0,-28.2968,-304.774	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:87:87,0:87:3105:0:0:0,-26.1896,-279.676	0/0:92:92,0:92:3293:0:0:0,-27.6948,-296.587	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:51:51,0:51:1821:0:0:0,-15.3525,-164.169	0/1:75:50,25:50:1773:25:885:-57.3893,0,-137.274	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:241:139,102:139:4972:102:3629:-254.265,0,-375.081	0/0:121:121,0:121:4298:0:0:0,-36.4246,-386.997	0/1:29:11,18:11:392:18:648:-49.922,0,-26.8902	0/0:141:141,0:141:5057:0:0:0,-42.4452,-455.272	0/0:180:179,1:179:6420:1:36:0,-50.5871,-574.288	0/1:70:30,40:30:1076:40:1431:-108.015,0,-76.0808	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:187:187,0:187:6716:0:0:0,-56.2926,-604.512	0/0:179:176,3:176:6316:3:108:0,-43.8092,-558.455	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	.:.:.:.:.:.:.:.	0/1:80:41,39:41:1442:39:1394:-101.676,0,-105.989	0/1:41:20,21:20:716:21:756:-56.025,0,-52.4255	0/0:94:94,0:94:3349:0:0:0,-28.2968,-301.626	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:113:71,42:71:2548:42:1504:-101.638,0,-195.554	0/0:72:72,0:72:2558:0:0:0,-21.6742,-230.467	0/0:141:141,0:141:5041:0:0:0,-42.4452,-453.832	0/0:158:156,1:156:5596:1:36:0,-44.0233,-500.163	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:125:65,60:65:2324:60:2129:-154.248,0,-171.791	0/1:33:18,15:18:648:15:536:-38.6408,0,-48.7179	0/1:16:13,3:13:464:3:108:-5.25869,0,-37.2525	0/1:98:70,28:70:2516:28:1008:-61.5354,0,-197.191	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9818	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.438	0/0:133:131,2:131:4696:2:72:0,-33.2003,-415.963	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:251:251,0:251:8973:0:0:0,-75.5585,-807.55	0/0:155:150,5:150:5368:5:180:0,-30.1076,-466.7	0/1:42:33,9:33:1188:9:324:-16.8626,0,-94.5853	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/0:132:132,0:132:4717:0:0:0,-39.736,-424.688	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/1:28:10,18:10:360:18:633:-48.8671,0,-24.3155	0/0:84:84,0:84:3000:0:0:0,-25.2865,-270.232	0/1:65:43,22:43:1544:22:784:-51.3088,0,-119.686	0/0:99:99,0:99:3521:0:0:0,-29.802,-317.096	0/0:138:138,0:138:4944:0:0:0,-41.5421,-445.109	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/0:134:134,0:134:4805:0:0:0,-40.338,-432.603	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:87:57,30:57:2052:30:1080:-71.3236,0,-158.762	0/0:134:134,0:134:4789:0:0:0,-40.338,-431.165	0/0:128:128,0:128:4581:0:0:0,-38.5318,-412.453	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.628	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:57:28,29:28:1004:29:1040:-76.7557,0,-73.5172	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/1:85:43,42:43:1544:42:1504:-110.067,0,-113.643	0/1:56:15,41:15:540:41:1459:-114.748,0,-32.0789	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:79:78,1:78:2788:1:36:0,-20.1831,-247.563
chr08	27469949	.	G	A	106070	PASS	AB=0.48286;ABP=5.61564;AC=164;AF=0.88172;AN=186;AO=4721;CIGAR=1X;DP=5261;DPB=5261;DPRA=19.0507;EPP=10219.8;EPPR=1173.43;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.9905;MQMR=60;NS=93;NUMALT=1;ODDS=1.7925;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168750;QR=19247;RO=539;RPL=3;RPP=10228.5;RPPR=1173.43;RPR=4718;RUN=1;SAF=1;SAP=10245.8;SAR=4720;SRF=0;SRP=1173.43;SRR=539;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:40:0,40:0:0:40:1432:-129.176,-12.0412,0	1/1:63:0,63:0:0:63:2244:-202.224,-18.9649,0	1/1:178:0,178:0:0:178:6360:-572.49,-53.5833,0	1/1:30:0,30:0:0:30:1072:-96.7919,-9.0309,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:70:0,69:0:0:69:2476:-222.734,-20.7711,0	1/1:66:0,66:0:0:66:2331:-210.038,-19.868,0	1/1:37:0,37:0:0:37:1304:-117.659,-11.1381,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:25:0,25:0:0:25:884:-79.8784,-7.52575,0	1/1:35:0,35:0:0:35:1234:-111.363,-10.5361,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:85:0,85:0:0:85:3031:-273.02,-25.5876,0	1/1:83:0,83:0:0:83:2971:-267.622,-24.9855,0	1/1:107:0,107:0:0:107:3832:-345.077,-32.2102,0	1/1:85:0,85:0:0:85:3035:-273.38,-25.5876,0	0/1:47:16,31:16:572:31:1116:-86.6033,0,-37.665	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:109:54,55:54:1928:55:1958:-143.682,0,-140.984	1/1:129:0,129:0:0:129:4628:-416.682,-38.8329,0	0/1:23:14,9:14:504:9:320:-22.2187,0,-38.7744	1/1:137:0,137:0:0:137:4912:-442.23,-41.2411,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:71:33,38:33:1188:38:1349:-100.335,0,-85.8555	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:8:3,5:3:108:5:171:-13.3172,0,-7.66693	1/1:182:0,182:0:0:182:6491:-584.272,-54.7875,0	1/1:56:0,56:0:0:56:1993:-179.642,-16.8577,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:80:34,46:34:1215:46:1648:-124.526,0,-85.5734	0/1:31:18,13:18:639:13:468:-33.1277,0,-48.5063	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:42:0,42:0:0:42:1496:-134.934,-12.6433,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:77:0,77:0:0:77:2730:-245.941,-23.1793,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:99:48,51:48:1724:51:1820:-134.279,0,-125.643	1/1:64:0,64:0:0:64:2295:-206.811,-19.2659,0	1/1:51:0,51:0:0:51:1823:-164.35,-15.3525,0	1/1:99:0,99:0:0:99:3527:-317.638,-29.802,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:66:38,28:38:1364:28:1008:-71.1684,0,-103.193	0/1:38:21,17:21:756:17:608:-43.6129,0,-56.9281	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:83:41,42:41:1472:42:1489:-109.317,0,-107.791	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:30:0,30:0:0:30:1074:-96.9724,-9.0309,0	1/1:70:2,68:2:72:68:2432:-212.299,-14.2354,0	.:.:.:.:.:.:.:.	1/1:128:1,127:1:36:127:4556:-406.607,-34.9336,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	0/1:22:11,11:11:392:11:370:-26.9994,0,-28.9974	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:117:1,116:1:36:116:4164:-371.343,-31.6222,0	0/1:60:37,23:37:1308:23:815:-55.609,0,-99.957	1/1:92:0,92:0:0:92:3285:-295.868,-27.6948,0	1/1:104:0,104:0:0:104:3732:-336.08,-31.3071,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:60:0,60:0:0:60:2133:-192.236,-18.0618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:75:0,75:0:0:75:2659:-239.555,-22.5773,0	0/1:65:28,37:28:995:37:1328:-100.252,0,-70.2971	1/1:122:1,121:1:36:121:4324:-385.738,-33.1274,0	1/1:52:0,52:0:0:52:1858:-167.499,-15.6536,0	1/1:63:1,62:1:36:62:2224:-196.826,-15.3666,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:88:0,88:0:0:88:3147:-283.455,-26.4906,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:58:34,24:34:1212:24:856:-59.9014,0,-91.9266	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:68:46,22:46:1618:22:788:-50.7748,0,-125.438	0/1:71:45,26:45:1608:26:936:-63.1863,0,-123.637	1/1:126:0,126:0:0:126:4492:-404.448,-37.9298,0	1/1:97:1,96:1:36:96:3440:-306.215,-25.6016,0
chr08	27470225	.	A	C	13018.7	PASS	AB=0.471877;ABP=14.6133;AC=22;AF=0.117021;AN=188;AO=812;CIGAR=1X;DP=9001;DPB=9001;DPRA=1.1415;EPP=1723.08;EPPR=17568.7;GTI=2;LEN=1;MEANALT=1.0625;MQM=59.9938;MQMR=59.9895;NS=94;NUMALT=1;ODDS=5.7779;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28845;QR=291297;RO=8185;RPL=807;RPP=1723.08;RPPR=17560;RPR=5;RUN=1;SAF=812;SAP=1766.25;SAR=0;SRF=8184;SRP=17767.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:92:92,0:92:3265:0:0:0,-27.6948,-294.071	0/0:163:163,0:163:5800:0:0:0,-49.0679,-522.118	0/0:317:317,0:317:11238:0:0:0,-95.4265,-1011.32	0/0:32:32,0:32:1137:0:0:0,-9.63296,-102.637	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:114:114,0:114:3998:0:0:0,-34.3174,-360.014	0/0:135:135,0:135:4785:0:0:0,-40.639,-430.807	0/0:83:83,0:83:2949:0:0:0,-24.9855,-265.643	0/0:109:109,0:109:3861:0:0:0,-32.8123,-347.688	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:90:90,0:90:3201:0:0:0,-27.0927,-288.313	0/0:76:75,0:75:2662:0:0:0,-22.5772,-239.463	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.74	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:29:29,0:29:1021:0:0:0,-8.72987,-92.2003	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:162:162,0:162:5738:0:0:0,-48.7669,-516.54	0/0:193:193,0:193:6889:0:0:0,-58.0988,-620.079	0/0:65:65,0:65:2301:0:0:0,-19.5669,-207.35	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.367	0/1:27:16,11:16:564:11:396:-27.8549,0,-42.9625	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.55	0/1:218:91,127:91:3272:127:4535:-342.693,0,-229.071	0/0:310:310,0:310:11060:0:0:0,-93.3193,-995.299	0/1:25:12,13:12:424:13:459:-34.1183,0,-30.9707	0/0:311:310,1:310:11043:1:36:0,-90.022,-990.168	0/0:96:93,3:93:3309:3:108:0,-18.8237,-287.953	0/1:85:47,38:47:1665:38:1340:-95.3097,0,-124.548	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:10:10,0:10:344:0:0:0,-3.0103,-31.2921	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:156:156,0:156:5600:0:0:0,-46.9607,-504.12	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:107:61,46:61:2165:46:1643:-115.948,0,-162.905	0/1:20:10,10:10:356:10:324:-23.4521,0,-26.3606	0/0:180:180,0:180:6393:0:0:0,-54.1854,-575.463	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:74:74,0:74:2632:0:0:0,-22.2762,-237.128	0/0:115:115,0:115:4104:0:0:0,-34.6184,-369.547	0/0:164:164,0:164:5829:0:0:0,-49.3689,-524.725	0/1:118:58,60:58:2057:60:2113:-154.915,0,-149.878	0/0:82:82,0:82:2881:0:0:0,-24.6845,-259.526	0/0:185:184,1:184:6544:1:36:0,-52.0923,-585.447	0/0:128:127,1:127:4510:1:36:0,-34.9336,-402.47	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:134:77,57:77:2730:57:2040:-143.534,0,-205.603	0/1:120:57,63:57:2028:63:2255:-167.089,0,-146.669	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:250:145,105:145:5180:105:3744:-261.902,0,-391.084	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:97:96,1:96:3416:1:32:0,-26.0006,-304.457	0/0:101:99,2:99:3528:2:72:0,-23.5673,-310.891	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:179:179,0:179:6369:0:0:0,-53.8844,-573.303	0/0:153:150,3:150:5360:3:108:0,-35.9824,-472.458	0/1:88:58,30:58:2076:30:1066:-69.761,0,-160.62	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.545	0/0:139:139,0:139:4945:0:0:0,-41.8432,-445.202	0/0:232:230,1:230:8240:1:36:0,-66.2995,-738.012	0/0:71:71,0:71:2524:0:0:0,-21.3731,-227.413	0/0:66:66,0:66:2341:0:0:0,-19.868,-210.948	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:40:21,19:21:756:19:684:-49.8491,0,-56.326	0/0:130:130,0:130:4624:0:0:0,-39.1339,-416.327	0/1:97:46,51:46:1628:51:1802:-133.259,0,-117.609	0/0:171:171,0:171:6065:0:0:0,-51.4761,-545.958	0/0:300:300,0:300:10595:0:0:0,-90.309,-953.471	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.174	0/0:144:143,0:143:5077:0:0:0,-43.0473,-456.718	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:146:145,1:145:5168:1:36:0,-40.3521,-461.665	0/1:91:64,27:64:2281:27:959:-59.2317,0,-178.157	0/0:193:193,0:193:6868:0:0:0,-58.0988,-618.109	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:93:93,0:93:3305:0:0:0,-27.9958,-297.669	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:119:119,0:119:4233:0:0:0,-35.8226,-381.151	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:49:25,24:25:892:24:845:-61.6166,0,-65.8492	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:130:72,58:72:2580:58:2035:-144.282,0,-193.302	0/1:53:16,37:16:576:37:1313:-102.515,0,-36.2204	0/0:199:197,1:197:7014:1:36:0,-56.3655,-627.698	0/0:90:90,0:90:3197:0:0:0,-27.0927,-287.953
chr08	27470264	.	A	G	130319	PASS	AB=0.447218;ABP=36.9361;AC=165;AF=0.887097;AN=186;AO=5900;CIGAR=1X;DP=6697;DPB=6697;DPRA=0;EPP=12797.3;EPPR=1711.96;GTI=0;LEN=1;MEANALT=1.09677;MQM=59.6297;MQMR=59.9581;NS=93;NUMALT=1;ODDS=0.33206;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209142;QR=28124;RO=787;RPL=2;RPP=12797.3;RPPR=1711.96;RPR=5898;RUN=1;SAF=0;SAP=12814.7;SAR=5900;SRF=0;SRP=1711.96;SRR=787;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:288:-26.2509,-2.40824,0	1/1:97:0,97:0:0:97:3435:-309.239,-29.1999,0	1/1:64:0,64:0:0:64:2274:-204.825,-19.2659,0	1/1:108:0,108:0:0:108:3840:-345.714,-32.5112,0	1/1:17:0,17:0:0:17:612:-55.3222,-5.11751,0	1/1:22:0,22:0:0:22:792:-71.6048,-6.62266,0	1/1:125:0,125:0:0:125:4435:-399.297,-37.6288,0	1/1:83:0,83:0:0:83:2909:-262.01,-24.9855,0	1/1:49:0,49:0:0:49:1708:-153.995,-14.7505,0	1/1:117:0,117:0:0:117:4182:-376.495,-35.2205,0	1/1:54:0,54:0:0:54:1913:-172.421,-16.2556,0	1/1:89:0,89:0:0:89:3104:-279.456,-26.7917,0	1/1:95:0,95:0:0:95:3359:-302.491,-28.5979,0	1/1:51:0,51:0:0:51:1828:-164.799,-15.3525,0	1/1:80:0,80:0:0:80:2860:-257.626,-24.0824,0	1/1:43:0,43:0:0:43:1528:-137.799,-12.9443,0	1/1:93:0,93:0:0:93:3311:-298.176,-27.9958,0	1/1:72:0,72:0:0:72:2569:-231.433,-21.6742,0	1/1:47:0,47:0:0:47:1680:-151.479,-14.1484,0	1/1:117:0,117:0:0:117:4156:-374.041,-35.2205,0	1/1:120:0,120:0:0:120:4257:-382.856,-36.1236,0	1/1:49:0,49:0:0:49:1748:-157.604,-14.7505,0	1/1:46:0,46:0:0:46:1622:-146.265,-13.8474,0	0/1:67:45,22:45:1597:22:788:-51.0758,0,-123.836	1/1:22:0,22:0:0:22:745:-67.3524,-6.62266,0	0/1:180:116,64:116:4146:64:2256:-149.114,0,-319.135	1/1:150:1,149:1:36:149:5291:-472.617,-41.5562,0	0/1:58:28,30:28:1008:30:1052:-77.5225,0,-73.5766	1/1:133:0,133:0:0:133:4701:-423.219,-40.037,0	1/1:79:5,74:5:176:74:2636:-221.286,-7.59635,0	0/1:90:52,38:52:1847:38:1360:-95.6023,0,-139.417	0/1:7:1,6:1:36:6:212:-17.3093,0,-1.49106	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:2:0,2:0:0:2:59:-5.60414,-0.60206,0	1/1:285:0,284:0:0:284:10085:-907.293,-85.4925,0	1/1:87:0,87:0:0:87:3083:-277.672,-26.1896,0	1/1:77:1,76:1:36:76:2685:-238.207,-19.581,0	1/1:2:0,2:0:0:2:63:-5.97926,-0.60206,0	0/1:133:66,67:66:2376:67:2375:-173.938,0,-174.06	0/1:39:23,16:23:824:16:567:-39.6159,0,-62.7431	1/1:40:0,40:0:0:40:1402:-126.474,-12.0412,0	1/1:117:0,117:0:0:117:4151:-373.757,-35.2205,0	1/1:91:0,91:0:0:91:3250:-292.714,-27.3937,0	1/1:41:0,41:0:0:41:1451:-130.835,-12.3422,0	1/1:50:0,50:0:0:50:1769:-159.489,-15.0515,0	0/1:95:48,47:48:1724:47:1666:-121.606,0,-126.848	1/1:59:0,59:0:0:59:2095:-188.819,-17.7608,0	1/1:135:0,135:0:0:135:4792:-431.406,-40.6391,0	1/1:41:0,41:0:0:41:1452:-130.976,-12.3422,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:82:40,42:40:1431:42:1492:-109.882,0,-104.402	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:63:40,23:40:1423:23:809:-54.1588,0,-109.402	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:59:0,59:0:0:59:2057:-185.373,-17.7608,0	1/1:91:0,90:0:0:90:3184:-285.873,-27.0927,0	1/1:9:0,9:0:0:9:320:-29.1344,-2.70927,0	1/1:150:0,149:0:0:149:5289:-475.787,-44.8535,0	1/1:141:1,140:1:36:140:4930:-439.614,-38.847,0	0/1:80:41,38:41:1453:38:1356:-97.0039,0,-106.923	1/1:54:0,52:0:0:52:1851:-166.436,-15.6536,0	1/1:90:1,89:1:36:89:3139:-279.058,-23.4944,0	1/1:44:0,44:0:0:44:1540:-138.88,-13.2453,0	1/1:27:0,27:0:0:27:968:-87.4328,-8.12781,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:98:0,97:0:0:97:3448:-310.257,-29.1999,0	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	1/1:62:0,62:0:0:62:2185:-196.8,-18.6639,0	0/1:116:54,62:54:1944:62:2198:-163.156,0,-140.317	1/1:73:0,73:0:0:73:2599:-234.144,-21.9752,0	1/1:59:0,59:0:0:59:2081:-187.459,-17.7608,0	1/1:67:0,67:0:0:67:2350:-211.723,-20.169,0	1/1:158:3,155:3:104:155:5495:-484.951,-37.8599,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	1/1:54:0,54:0:0:54:1916:-172.705,-16.2556,0	0/1:85:51,34:51:1803:34:1199:-82.6272,0,-136.961	1/1:104:0,103:0:0:103:3657:-329.027,-31.0061,0	1/1:107:0,107:0:0:107:3795:-341.713,-32.2102,0	1/1:58:0,58:0:0:58:2032:-183.088,-17.4597,0	1/1:87:0,87:0:0:87:3096:-278.842,-26.1896,0	1/1:154:0,154:0:0:154:5495:-494.643,-46.3586,0	1/1:44:0,43:0:0:43:1530:-137.587,-12.9443,0	0/1:82:38,44:38:1352:44:1539:-114.089,0,-97.2959	1/1:85:0,85:0:0:85:3007:-270.83,-25.5876,0	1/1:61:0,61:0:0:61:2175:-196.002,-18.3628,0	0/1:78:38,40:38:1364:40:1390:-101.908,0,-99.5804	0/1:83:59,24:59:2116:24:851:-51.924,0,-165.716	1/1:78:1,77:1:36:77:2730:-242.34,-19.8821,0	1/1:139:0,138:0:0:138:4931:-443.696,-41.5421,0
chr08	27470291	.	G	A	13806.8	PASS	AB=0.554242;ABP=39.7592;AC=21;AF=0.112903;AN=186;AO=807;CIGAR=1X;DP=6857;DPB=6857;DPRA=1.01245;EPP=1755.39;EPPR=13138.2;GTI=0;LEN=1;MEANALT=1.04;MQM=59.9566;MQMR=59.6184;NS=93;NUMALT=1;ODDS=3.32268;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28881;QR=216871;RO=6049;RPL=807;RPP=1755.39;RPPR=13138.2;RPR=0;RUN=1;SAF=0;SAP=1755.39;SAR=807;SRF=0;SRP=13138.2;SRR=6049;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2509	0/0:98:98,0:98:3520:0:0:0,-29.5009,-316.795	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.629	0/0:111:111,0:111:3976:0:0:0,-33.4143,-357.945	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6491	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1216	0/0:130:130,0:130:4672:0:0:0,-39.1339,-420.497	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.496	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.158	0/0:121:121,0:121:4352:0:0:0,-36.4246,-391.785	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.477	0/0:88:88,0:88:3151:0:0:0,-26.4906,-283.674	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.723	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.947	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.455	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.027	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.943	0/0:74:74,0:74:2655:0:0:0,-22.2762,-239.162	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.429	0/0:120:120,0:120:4265:0:0:0,-36.1236,-383.845	0/0:124:124,0:124:4448:0:0:0,-37.3277,-399.138	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.683	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.205	0/1:67:22,45:22:792:45:1590:-123.213,0,-51.4367	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.5148	0/1:188:67,121:67:2408:121:4296:-330.218,0,-160.38	0/0:155:155,0:155:5576:0:0:0,-46.6596,-501.848	0/1:58:30,28:30:1080:28:1008:-73.5766,0,-80.0409	0/0:136:136,0:136:4865:0:0:0,-40.9401,-437.969	0/0:83:78,5:78:2792:5:180:0,-8.43342,-234.944	0/1:96:42,54:42:1504:54:1944:-146.337,0,-106.659	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4365	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0929	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:284:284,0:284:10190:0:0:0,-85.4925,-916.911	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.168	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.579	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.42782	0/1:140:68,72:68:2440:72:2557:-188.235,0,-177.702	0/1:41:18,23:18:633:23:824:-62.1411,0,-44.9482	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.176	0/0:119:119,0:119:4255:0:0:0,-35.8226,-383.096	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.33	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.596	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/1:97:49,48:49:1756:48:1724:-126.245,0,-129.102	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:139:139,0:139:4996:0:0:0,-41.8432,-449.756	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/1:85:44,41:44:1584:41:1476:-107.549,0,-117.256	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:65:26,39:26:932:39:1404:-107.092,0,-64.6273	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	.:.:.:.:.:.:.:.	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.248	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.567	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4896	0/0:154:154,0:154:5532:0:0:0,-46.3586,-497.995	0/0:144:143,1:143:5132:1:36:0,-39.75,-458.04	0/1:79:38,41:38:1364:41:1457:-107.643,0,-99.2747	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.875	0/0:96:96,0:96:3425:0:0:0,-28.8989,-308.365	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.007	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0722	0/0:32:31,1:31:1100:1:36:0,-6.03468,-95.7038	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.779	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.843	0/1:119:63,56:63:2264:56:2001:-144.539,0,-168.17	0/0:75:75,0:75:2669:0:0:0,-22.5772,-240.44	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.225	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.291	0/0:163:160,3:160:5748:3:108:0,-38.9927,-507.319	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.38	0/1:85:33,52:33:1180:52:1872:-143.172,0,-80.9205	0/0:106:106,0:106:3789:0:0:0,-31.9092,-341.143	0/0:110:110,0:110:3947:0:0:0,-33.1133,-355.303	0/0:57:57,0:57:2026:0:0:0,-17.1587,-182.609	0/0:91:91,0:91:3247:0:0:0,-27.3937,-292.43	0/0:155:155,0:155:5576:0:0:0,-46.6596,-501.92	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.568	0/1:82:43,38:43:1540:38:1364:-98.3184,0,-114.134	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.589	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.13	0/1:80:39,41:39:1382:41:1476:-109.054,0,-100.59	0/1:83:23,60:23:828:60:2160:-169.673,0,-49.8586	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.709	0/0:142:142,0:142:5108:0:0:0,-42.7463,-459.756
chr08	27470294	.	T	C	133400	PASS	AB=0.444599;ABP=41.266;AC=165;AF=0.887097;AN=186;AO=5982;CIGAR=1X;DP=6796;DPB=6796;DPRA=0;EPP=12992.8;EPPR=1766.25;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.6433;MQMR=59.9569;NS=93;NUMALT=1;ODDS=3.67;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213725;QR=29101;RO=812;RPL=5982;RPP=12992.8;RPPR=1766.25;RPR=0;RUN=1;SAF=0;SAP=12992.8;SAR=5982;SRF=0;SRP=1766.25;SRR=812;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:288:-26.2509,-2.40824,0	1/1:98:0,98:0:0:98:3506:-315.636,-29.5009,0	1/1:65:0,65:0:0:65:2340:-210.68,-19.567,0	1/1:107:0,107:0:0:107:3794:-341.622,-32.2102,0	1/1:17:0,16:0:0:16:572:-51.3653,-4.81648,0	1/1:22:0,22:0:0:22:792:-71.6048,-6.62266,0	1/1:127:0,127:0:0:127:4548:-409.432,-38.2308,0	1/1:82:0,82:0:0:82:2898:-261.011,-24.6845,0	1/1:51:0,51:0:0:51:1828:-164.793,-15.3525,0	1/1:119:0,119:0:0:119:4268:-384.23,-35.8226,0	1/1:52:0,52:0:0:52:1856:-167.315,-15.6536,0	1/1:86:0,86:0:0:86:3056:-275.266,-25.8886,0	1/1:97:0,97:0:0:97:3461:-311.655,-29.1999,0	1/1:54:0,54:0:0:54:1918:-172.891,-16.2556,0	1/1:80:0,80:0:0:80:2859:-257.531,-24.0824,0	1/1:44:0,44:0:0:44:1567:-141.309,-13.2453,0	1/1:93:0,93:0:0:93:3340:-300.783,-27.9958,0	1/1:74:0,74:0:0:74:2644:-238.178,-22.2762,0	1/1:48:0,48:0:0:48:1724:-155.429,-14.4494,0	1/1:118:0,118:0:0:118:4216:-379.566,-35.5215,0	1/1:120:0,120:0:0:120:4276:-383.682,-36.1236,0	1/1:49:0,49:0:0:49:1756:-158.323,-14.7505,0	1/1:47:0,47:0:0:47:1688:-152.205,-14.1484,0	0/1:67:45,22:45:1616:22:792:-51.4367,0,-125.548	1/1:22:0,22:0:0:22:792:-71.5975,-6.62266,0	0/1:187:121,66:121:4340:66:2356:-156.004,0,-334.475	1/1:154:0,154:0:0:154:5501:-495.123,-46.3586,0	0/1:58:28,30:28:1004:30:1080:-80.0409,0,-73.2161	1/1:135:2,133:2:68:133:4749:-421.078,-34.1813,0	1/1:82:5,77:5:176:77:2745:-231.083,-8.49944,0	0/1:96:54,42:54:1928:42:1508:-107.019,0,-144.898	0/1:7:2,5:2:72:5:169:-13.4336,0,-4.72951	1/1:13:0,13:0:0:13:468:-42.455,-3.91339,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:282:0,282:0:0:282:10111:-909.836,-84.8905,0	1/1:86:0,86:0:0:86:3084:-277.694,-25.8886,0	1/1:79:1,78:1:36:78:2783:-247.03,-20.1831,0	1/1:2:0,2:0:0:2:72:-6.80683,-0.60206,0	0/1:139:72,67:72:2584:67:2412:-175.483,0,-190.966	0/1:41:23,18:23:828:18:640:-45.5825,0,-62.5019	1/1:40:0,40:0:0:40:1428:-128.816,-12.0412,0	1/1:117:0,117:0:0:117:4200:-378.164,-35.2205,0	1/1:91:0,91:0:0:91:3268:-294.33,-27.3937,0	1/1:42:0,42:0:0:42:1499:-135.159,-12.6433,0	1/1:49:0,49:0:0:49:1749:-157.69,-14.7505,0	0/1:97:48,49:48:1716:49:1745:-128.11,0,-125.526	1/1:61:0,61:0:0:61:2176:-196.107,-18.3628,0	1/1:134:0,134:0:0:134:4812:-433.206,-40.338,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:85:41,44:41:1472:44:1580:-116.896,0,-107.189	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/1:12:5,7:5:165:7:252:-19.4166,0,-11.5612	0/1:66:40,26:40:1436:26:920:-63.2445,0,-109.67	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:57:0,57:0:0:57:2048:-184.578,-17.1587,0	1/1:92:0,92:0:0:92:3258:-293.283,-27.6948,0	1/1:9:0,9:0:0:9:324:-29.4896,-2.70927,0	1/1:155:1,154:1:36:154:5481:-489.817,-43.0614,0	1/1:144:1,143:1:36:143:5089:-453.919,-39.75,0	0/1:78:40,38:40:1432:38:1360:-98.3576,0,-105.697	1/1:57:1,56:1:36:56:1989:-175.612,-13.5604,0	1/1:94:0,94:0:0:94:3361:-302.624,-28.2968,0	1/1:44:0,44:0:0:44:1567:-141.311,-13.2453,0	1/1:27:0,27:0:0:27:960:-86.7117,-8.12781,0	1/1:32:1,31:1:32:31:1100:-96.111,-6.43365,0	1/1:97:0,97:0:0:97:3456:-311.186,-29.1999,0	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	1/1:65:0,65:0:0:65:2332:-209.964,-19.567,0	0/1:119:56,62:56:2004:62:2216:-163.811,0,-144.752	1/1:71:0,71:0:0:71:2544:-229.197,-21.3731,0	1/1:59:0,59:0:0:59:2112:-190.341,-17.7608,0	1/1:71:0,71:0:0:71:2544:-229.17,-21.3731,0	1/1:163:3,160:3:108:160:5671:-500.406,-38.9927,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:55:0,55:0:0:55:1964:-177.026,-16.5567,0	0/1:86:52,34:52:1872:34:1220:-84.2182,0,-142.871	1/1:106:0,106:0:0:106:3804:-342.493,-31.9092,0	1/1:109:0,109:0:0:109:3890:-350.266,-32.8123,0	1/1:60:0,60:0:0:60:2152:-193.888,-18.0618,0	1/1:90:0,90:0:0:90:3201:-288.289,-27.0927,0	1/1:153:0,153:0:0:153:5440:-489.7,-46.0576,0	1/1:44:0,44:0:0:44:1580:-142.447,-13.2453,0	0/1:81:38,43:38:1364:43:1548:-115.205,0,-98.6773	1/1:86:1,85:1:36:85:3039:-270.106,-22.2903,0	1/1:61:0,61:0:0:61:2177:-196.181,-18.3628,0	0/1:78:40,38:40:1436:38:1341:-97.5031,0,-106.057	0/1:84:60,24:60:2156:24:856:-52.0746,0,-169.012	1/1:80:0,80:0:0:80:2849:-256.64,-24.0824,0	1/1:140:0,140:0:0:140:5014:-451.373,-42.1442,0
chr08	27590675	.	C	T	242101	PASS	AB=0.513221;ABP=6.51271;AC=166;AF=0.882979;AN=188;AO=8619;CIGAR=1X;DP=9755;DPB=9755;DPRA=0;EPP=1632.27;EPPR=558.833;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9652;MQMR=59.9938;NS=94;NUMALT=1;ODDS=10.0483;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=307750;QR=40452;RO=1135;RPL=94;RPP=17911.4;RPPR=2313.76;RPR=8525;RUN=1;SAF=5673;SAP=1876.57;SAR=2946;SRF=855;SRP=635.559;SRR=280;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:83:0,83:0:0:83:2956:-266.272,-24.9855,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:94:0,94:0:0:94:3362:-302.796,-28.2968,0	1/1:25:0,25:0:0:25:877:-79.2452,-7.52575,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:81:0,81:0:0:81:2889:-260.246,-24.3834,0	1/1:88:0,88:0:0:88:3127:-281.377,-26.4906,0	1/1:65:0,65:0:0:65:2325:-209.423,-19.567,0	1/1:44:0,44:0:0:44:1577:-141.593,-13.2453,0	1/1:303:0,303:0:0:303:10822:-973.878,-91.2121,0	1/1:109:0,109:0:0:109:3896:-350.835,-32.8123,0	1/1:140:0,140:0:0:140:5013:-451.316,-42.1442,0	1/1:122:0,122:0:0:122:4379:-394.282,-36.7257,0	1/1:110:0,110:0:0:110:3928:-353.714,-33.1133,0	1/1:119:0,119:0:0:119:4257:-383.306,-35.8226,0	1/1:115:0,115:0:0:115:4123:-371.253,-34.6185,0	1/1:101:0,101:0:0:101:3609:-325.016,-30.404,0	1/1:189:0,189:0:0:189:6712:-604.156,-56.8947,0	1/1:96:1,95:1:36:95:3358:-298.822,-25.3006,0	1/1:79:0,79:0:0:79:2810:-253.139,-23.7814,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:73:28,45:28:1008:45:1620:-124.115,0,-69.0612	1/1:33:0,33:0:0:33:1158:-104.525,-9.93399,0	0/1:118:58,60:58:2040:60:2135:-156.896,0,-148.348	1/1:92:0,92:0:0:92:3289:-296.226,-27.6948,0	0/1:62:36,26:36:1279:26:936:-65.8956,0,-96.7486	1/1:93:0,93:0:0:93:3348:-301.535,-27.9958,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:65:38,27:38:1344:27:958:-66.9634,0,-101.693	0/1:126:56,70:56:2000:70:2498:-187.142,0,-142.344	1/1:154:0,154:0:0:154:5495:-494.678,-46.3586,0	0/1:77:29,48:29:1036:48:1707:-130.736,0,-70.3746	1/1:287:1,286:1:36:286:10222:-916.31,-82.7973,0	0/1:129:55,74:55:1946:74:2640:-199.014,0,-136.582	1/1:228:1,227:1:36:227:8115:-726.767,-65.0366,0	1/1:29:0,29:0:0:29:1027:-92.7246,-8.72987,0	1/1:282:0,282:0:0:282:10078:-906.954,-84.8905,0	1/1:74:1,73:1:36:73:2595:-230.2,-18.6779,0	0/1:69:36,33:36:1279:33:1180:-85.737,0,-94.6414	0/1:201:99,101:99:3523:101:3594:-263.198,0,-256.814	1/1:53:2,51:2:72:51:1794:-154.872,-9.11787,0	1/1:117:0,117:0:0:117:4180:-376.38,-35.2205,0	1/1:99:0,99:0:0:99:3529:-317.819,-29.802,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:67:29,38:29:1040:38:1352:-101.811,0,-73.7454	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:84:0,84:0:0:84:3003:-270.501,-25.2865,0	1/1:96:0,96:0:0:96:3421:-308.103,-28.8989,0	0/1:204:100,104:100:3563:104:3736:-275.029,0,-259.469	0/1:52:27,25:27:964:25:896:-65.3068,0,-71.4233	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	0/1:78:31,47:31:1104:47:1669:-127.007,0,-76.1903	0/1:52:26,26:26:932:26:928:-68.1847,0,-68.5453	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:104:0,104:0:0:104:3716:-334.641,-31.3071,0	1/1:178:3,175:3:108:175:6261:-553.5,-43.5082,0	1/1:27:0,27:0:0:27:965:-87.167,-8.12781,0	1/1:115:0,115:0:0:115:4132:-372.062,-34.6185,0	1/1:130:0,130:0:0:130:4660:-419.559,-39.1339,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:91:2,89:2:57:89:3137:-277.143,-21.9804,0	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:80:0,80:0:0:80:2848:-256.556,-24.0824,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:291:0,291:0:0:291:10338:-930.348,-87.5997,0	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	1/1:147:0,147:0:0:147:5280:-475.228,-44.2514,0	0/1:162:81,81:81:2908:81:2889:-211.478,0,-213.182	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:26:13,13:13:459:13:468:-34.6329,0,-33.8173	1/1:89:0,89:0:0:89:3163:-284.896,-26.7917,0	1/1:79:0,79:0:0:79:2830:-254.938,-23.7814,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:84:0,84:0:0:84:2992:-269.51,-25.2865,0	1/1:212:0,212:0:0:212:7558:-680.263,-63.8184,0	1/1:67:1,66:1:36:66:2359:-208.97,-16.5707,0	0/1:46:17,29:17:608:29:1036:-79.7065,0,-41.2046	1/1:97:0,97:0:0:97:3449:-310.623,-29.1999,0	1/1:145:0,145:0:0:145:5152:-463.819,-43.6494,0	1/1:99:0,99:0:0:99:3562:-320.786,-29.802,0	1/1:146:0,146:0:0:146:5248:-472.454,-43.9504,0	1/1:191:1,190:1:36:190:6775:-606.224,-53.8985,0	1/1:60:0,60:0:0:60:2145:-193.317,-18.0618,0	0/1:120:54,66:54:1932:66:2359:-176.445,0,-138.033	1/1:107:0,107:0:0:107:3838:-345.615,-32.2102,0	1/1:403:0,403:0:0:403:14360:-1292.15,-121.315,0	0/1:437:215,222:215:7685:222:7902:-579.651,0,-560.134	0/1:92:68,24:68:2413:24:860:-50.0271,0,-189.731	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:183:0,183:0:0:183:6530:-587.782,-55.0885,0
chr08	27683334	.	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chr08	27805163	.	A	G	17496.4	PASS	AB=0.490875;ABP=4.55584;AC=24;AF=0.12766;AN=188;AO=1063;CIGAR=1X;DP=9706;DPB=9706;DPRA=1.01664;EPP=2311.29;EPPR=18768.9;GTI=1;LEN=1;MEANALT=1;MQM=59.9247;MQMR=59.9729;NS=94;NUMALT=1;ODDS=5.10923;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38079;QR=308989;RO=8642;RPL=0;RPP=2311.29;RPPR=18768.9;RPR=1063;RUN=1;SAF=1063;SAP=2311.29;SAR=0;SRF=8642;SRP=18768.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.923	0/0:144:144,0:144:5142:0:0:0,-43.3483,-462.905	0/0:86:86,0:86:3065:0:0:0,-25.8886,-276.078	0/0:144:143,1:143:5090:1:36:0,-39.75,-454.643	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:112:111,1:111:3961:1:36:0,-30.1171,-353.082	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.987	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:127:127,0:127:4514:0:0:0,-38.2308,-406.427	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:133:133,0:133:4763:0:0:0,-40.037,-428.825	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.515	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:149:148,0:148:5312:0:0:0,-44.5524,-477.893	0/0:139:139,0:139:4973:0:0:0,-41.8432,-447.717	0/0:85:85,0:85:3025:0:0:0,-25.5875,-272.412	0/0:68:68,0:68:2398:0:0:0,-20.47,-216.069	0/1:96:58,38:58:2076:38:1360:-93.8013,0,-158.212	0/0:132:132,0:132:4717:0:0:0,-39.736,-424.688	0/1:294:148,146:148:5259:146:5225:-381.883,0,-384.94	0/0:237:237,0:237:8478:0:0:0,-71.3441,-763.014	0/1:30:11,19:11:396:19:680:-52.4979,0,-26.9518	0/0:227:227,0:227:8091:0:0:0,-68.3338,-728.207	0/0:165:163,2:163:5803:2:72:0,-42.8332,-515.545	0/1:131:68,63:68:2418:63:2260:-164.225,0,-178.438	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:11:5,6:5:172:6:216:-16.4792,0,-12.5066	0/0:225:225,0:225:8072:0:0:0,-67.7317,-726.496	0/0:291:291,0:291:10422:0:0:0,-87.5997,-937.264	0/1:110:49,61:49:1752:61:2188:-164.007,0,-124.85	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:126:71,55:71:2556:55:1976:-140.185,0,-192.36	0/1:49:22,27:22:788:27:968:-72.6869,0,-56.4943	0/0:209:209,0:209:7405:0:0:0,-62.9153,-665.869	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:169:169,0:169:6041:0:0:0,-50.8741,-543.793	0/0:121:121,0:121:4325:0:0:0,-36.4246,-389.42	0/1:197:87,110:87:3112:110:3936:-295.13,0,-221.004	0/0:170:170,0:170:6052:0:0:0,-51.1751,-544.78	0/0:148:148,0:148:5300:0:0:0,-44.5524,-477.135	0/0:216:215,1:215:7693:1:36:0,-61.4242,-688.805	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:149:75,74:75:2677:74:2660:-194.763,0,-196.32	0/1:52:20,32:20:701:32:1152:-88.3366,0,-47.7582	0/1:37:21,16:21:752:16:572:-40.6753,0,-56.8681	0/1:94:57,37:57:2044:37:1328:-91.5254,0,-155.93	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/0:23:21,2:21:756:2:72:0,-0.0869673,-61.5305	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.494	0/0:187:186,1:186:6684:1:36:0,-52.6943,-598.035	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:159:159,0:159:5686:0:0:0,-47.8638,-511.855	0/0:200:197,3:197:7034:3:108:0,-50.1308,-623.012	0/1:91:53,38:53:1888:38:1360:-95.3069,0,-142.805	0/0:55:55,0:55:1946:0:0:0,-16.5566,-175.412	0/0:157:157,0:157:5613:0:0:0,-47.2617,-505.262	0/0:168:168,0:168:5979:0:0:0,-50.573,-538.215	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:96:96,0:96:3429:0:0:0,-28.8989,-308.822	0/1:39:18,21:18:633:21:752:-56.2661,0,-45.5549	0/0:164:164,0:164:5857:0:0:0,-49.3689,-527.24	0/1:84:41,43:41:1468:43:1524:-112.167,0,-107.13	0/0:196:195,1:195:7004:1:36:0,-55.4036,-626.822	0/0:157:157,0:157:5616:0:0:0,-47.2617,-505.562	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.573	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.722	0/1:82:62,20:62:2232:20:720:-40.3744,0,-176.459	0/0:187:187,0:187:6701:0:0:0,-56.2926,-603.163	0/0:131:131,0:131:4716:0:0:0,-39.4349,-424.596	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:157:157,0:157:5640:0:0:0,-47.2617,-507.718	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123	0/1:71:33,38:33:1184:38:1351:-100.516,0,-85.4952	0/0:64:62,2:62:2228:2:72:0,-12.4292,-193.947	0/1:107:50,57:50:1788:57:2031:-150.852,0,-128.992	0/1:196:110,86:110:3937:86:3088:-219.137,0,-295.518	0/1:67:17,50:17:608:50:1796:-141.753,0,-34.883	0/0:88:88,0:88:3110:0:0:0,-26.4906,-280.126	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678
chr08	27805208	.	GCCA	GCCT	164801	PASS	AB=0.488676;ABP=5.2233;AC=163;AF=0.867021;AN=188;AO=7650;CIGAR=3M1X;DP=8741;DPB=8741;DPRA=0;EPP=16234.8;EPPR=2215.74;GTI=4;LEN=1;MEANALT=1.65957;MQM=59.9816;MQMR=59.9303;NS=94;NUMALT=1;ODDS=1.10564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264559;QR=33582;RO=1019;RPL=7606;RPP=16234.8;RPPR=2215.74;RPR=44;RUN=1;SAF=7648;SAP=16597.4;SAR=2;SRF=1019;SRP=2215.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,28:0:0:28:967:-87.0393,-8.42884,0	1/1:132:0,130:0:0:130:4487:-403.744,-39.1339,0	1/1:81:0,80:0:0:80:2730:-245.663,-24.0824,0	1/1:122:0,121:0:0:121:4202:-378.079,-36.4246,0	1/1:57:0,56:0:0:56:1938:-174.333,-16.8577,0	1/1:38:0,38:0:0:38:1274:-114.951,-11.4391,0	1/1:93:0,93:0:0:93:3288:-296.143,-27.9958,0	1/1:125:1,123:1:22:123:4242:-379.739,-35.3777,0	1/1:59:0,59:0:0:59:2033:-183.236,-17.7608,0	1/1:112:0,110:0:0:110:3838:-345.319,-33.1133,0	1/1:69:0,69:0:0:69:2328:-209.781,-20.7711,0	1/1:73:0,70:0:0:70:2413:-217.087,-21.0721,0	1/1:70:0,68:0:0:68:2360:-212.36,-20.47,0	1/1:117:0,117:0:0:117:4036:-363.437,-35.2205,0	1/1:46:0,46:0:0:46:1594:-143.748,-13.8474,0	1/1:54:0,53:0:0:53:1776:-159.902,-15.9546,0	1/1:58:0,58:0:0:58:1970:-177.573,-17.4597,0	1/1:53:0,53:0:0:53:1817:-163.807,-15.9546,0	1/1:48:1,47:1:30:47:1596:-140.924,-11.4499,0	1/1:131:0,130:0:0:130:4541:-408.503,-39.1339,0	1/1:113:0,111:0:0:111:3816:-343.362,-33.4143,0	1/1:76:1,75:1:26:75:2628:-234.133,-20.2785,0	1/1:53:0,53:0:0:53:1824:-164.438,-15.9546,0	0/1:90:38,51:38:1262:51:1777:-133.187,0,-86.8465	1/1:118:0,118:0:0:118:4053:-364.965,-35.5215,0	0/1:271:144,125:144:4827:125:4322:-307.93,0,-353.375	1/1:211:0,211:0:0:211:7314:-658.33,-63.5173,0	0/1:26:17,9:17:542:9:303:-19.77,0,-41.2584	1/1:200:0,198:0:0:198:6873:-618.444,-59.6039,0	1/1:152:2,150:2:61:150:5274:-469.011,-39.9633,0	0/1:121:59,62:59:1996:62:2122:-154.822,0,-143.486	0/1:4:2,2:2:59:2:72:-5.6326,0,-4.40014	1/1:16:1,15:1:24:15:532:-45.8132,-2.41659,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:16:0,13:0:0:13:460:-41.3983,-3.91339,0	0/1:10:6,4:6:205:4:140:-9.93428,0,-15.7745	1/1:206:0,204:0:0:204:7136:-642.045,-61.4101,0	1/1:263:1,260:1:27:260:8938:-801.59,-76.1324,0	0/1:99:60,38:60:1917:38:1309:-88.3925,0,-143.077	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:114:54,58:54:1839:58:2043:-150.11,0,-131.756	0/1:44:24,20:24:792:20:686:-48.8129,0,-58.3423	1/1:185:0,183:0:0:183:6330:-569.542,-55.0885,0	1/1:68:0,66:0:0:66:2239:-201.456,-19.868,0	1/1:42:0,42:0:0:42:1378:-124.304,-12.6433,0	1/1:155:0,154:0:0:154:5254:-472.653,-46.3586,0	1/1:106:1,105:1:26:105:3653:-326.379,-29.3094,0	0/1:180:105,75:105:3504:75:2593:-179.434,0,-261.398	1/1:152:0,152:0:0:152:5288:-476.063,-45.7566,0	1/1:133:0,128:0:0:128:4489:-403.886,-38.5318,0	1/1:199:1,197:1:36:197:6896:-617.12,-56.3655,0	0/1:15:6,7:6:215:7:230:-16.755,0,-15.4264	0/1:143:73,68:73:2484:68:2396:-173.143,0,-181.062	0/1:50:31,19:31:1044:19:672:-45.7553,0,-79.2116	0/1:33:13,20:13:408:20:684:-51.942,0,-27.0895	0/1:88:37,49:37:1268:49:1723:-129.164,0,-88.2325	1/1:39:0,39:0:0:39:1356:-122.336,-11.7402,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:18:2,16:2:71:16:560:-45.3102,0,-1.32352	1/1:65:1,64:1:23:64:2195:-195.512,-17.267,0	1/1:175:1,173:1:27:173:5957:-533.514,-49.9943,0	1/1:9:0,7:0:0:7:235:-21.1818,-2.10721,0	1/1:138:2,135:2:51:135:4693:-417.706,-36.6214,0	1/1:175:4,168:4:132:168:5810:-510.845,-39.8744,0	0/1:87:36,51:36:1216:51:1779:-134.2,0,-83.5492	1/1:53:0,53:0:0:53:1866:-168.218,-15.9546,0	1/1:132:0,131:0:0:131:4539:-408.425,-39.4349,0	1/1:148:0,146:0:0:146:5016:-451.374,-43.9504,0	1/1:42:0,41:0:0:41:1408:-126.702,-12.3422,0	1/1:74:0,73:0:0:73:2555:-229.86,-21.9752,0	1/1:84:0,84:0:0:84:2885:-259.89,-25.2865,0	0/1:38:22,15:22:726:15:492:-33.0958,0,-54.1528	1/1:149:0,149:0:0:149:5117:-460.685,-44.8535,0	0/1:75:39,36:39:1243:36:1248:-90.0427,0,-89.5799	1/1:175:1,173:1:34:173:6075:-543.453,-49.3302,0	1/1:142:0,141:0:0:141:4956:-445.942,-42.4452,0	1/1:88:0,88:0:0:88:3030:-272.933,-26.4906,0	1/1:75:0,75:0:0:75:2612:-235.329,-22.5773,0	1/1:17:0,17:0:0:17:591:-53.5153,-5.11751,0	1/1:78:0,77:0:0:77:2646:-238.047,-23.1793,0	0/1:79:21,58:21:667:58:1991:-155.678,0,-36.5445	1/1:177:0,176:0:0:176:6076:-546.687,-52.9813,0	1/1:119:0,119:0:0:119:4117:-370.722,-35.8226,0	1/1:72:1,71:1:21:71:2420:-215.956,-19.5742,0	1/1:65:0,64:0:0:64:2169:-195.271,-19.2659,0	1/1:144:0,143:0:0:143:4930:-443.563,-43.0473,0	1/1:50:0,50:0:0:50:1706:-153.821,-15.0515,0	0/1:65:36,29:36:1151:29:988:-69.6587,0,-84.3137	1/1:60:0,60:0:0:60:2093:-188.639,-18.0618,0	0/1:100:53,46:53:1701:46:1612:-115.244,0,-123.246	0/1:173:75,96:75:2407:96:3221:-238.3,0,-165.073	0/1:61:46,15:46:1462:15:497:-26.6829,0,-113.5	1/1:68:0,68:0:0:68:2358:-212.478,-20.47,0	1/1:94:0,94:0:0:94:3239:-291.736,-28.2968,0
chr08	27821433	.	T	G	7495.12	PASS	AB=0.489429;ABP=3.92847;AC=25;AF=0.132979;AN=188;AO=478;CIGAR=1X;DP=4661;DPB=4661;DPRA=0.893114;EPP=1040.97;EPPR=9049.4;GTI=2;LEN=1;MEANALT=1.03226;MQM=60;MQMR=59.9794;NS=94;NUMALT=1;ODDS=2.03755;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=17053;QR=148825;RO=4182;RPL=478;RPP=1040.97;RPPR=9049.4;RPR=0;RUN=1;SAF=0;SAP=1040.97;SAR=478;SRF=0;SRP=9084.11;SRR=4182;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.714	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/0:97:97,0:97:3460:0:0:0,-29.1999,-311.613	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/0:35:35,0:35:1256:0:0:0,-10.536,-112.717	0/0:55:55,0:55:1940:0:0:0,-16.5566,-174.877	0/0:131:130,1:130:4633:1:36:0,-35.8367,-413.535	0/0:48:48,0:48:1667:0:0:0,-14.4494,-150.311	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:68:67,1:67:2396:1:36:0,-16.8718,-212.299	0/0:90:90,0:90:3163:0:0:0,-27.0927,-284.894	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.701	0/0:111:111,0:111:3939:0:0:0,-33.4143,-354.7	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/1:94:48,46:48:1716:46:1641:-119.681,0,-126.429	0/0:153:153,0:153:5461:0:0:0,-46.0576,-491.618	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:93:91,2:91:3233:2:72:0,-21.1591,-284.355	0/0:52:47,4:47:1669:4:144:0,-2.39874,-137.182	0/1:52:29,23:29:1040:23:824:-58.8298,0,-78.2608	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/1:29:9,20:9:320:20:713:-55.7667,0,-20.4125	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.898	0/0:81:81,0:81:2884:0:0:0,-24.3834,-259.798	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:55:29,26:29:1021:26:921:-66.6486,0,-75.6436	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:117:117,0:117:4164:0:0:0,-35.2205,-374.945	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.929	0/1:79:30,49:30:1038:49:1742:-133.282,0,-69.9437	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:11:3,8:3:108:8:279:-22.1362,0,-6.76384	0/1:87:48,39:48:1705:39:1396:-99.7495,0,-127.544	0/1:43:26,17:26:932:17:608:-42.1077,0,-71.2546	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/1:52:32,20:32:1133:20:716:-49.1142,0,-86.6231	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/0:44:43,1:43:1540:1:36:0,-9.64704,-135.295	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:106:106,0:106:3777:0:0:0,-31.9092,-340.129	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:42:20,22:20:720:22:784:-58.2407,0,-52.4855	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/0:121:121,0:121:4218:0:0:0,-36.4246,-379.801	0/0:142:142,0:142:5065:0:0:0,-42.7463,-455.99	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:20:19,1:19:661:1:36:0,-2.42232,-56.2133	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:27:13,14:13:468:14:496:-36.8464,0,-34.3318	0/0:107:107,0:107:3775:0:0:0,-32.2102,-339.948	0/1:56:29,27:29:1044:27:957:-69.5862,0,-77.4171	0/0:105:105,0:105:3733:0:0:0,-31.6081,-336.171	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:108:108,0:108:3853:0:0:0,-32.5112,-346.962	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/1:78:36,42:36:1292:42:1504:-112.174,0,-93.1034	0/0:115:115,0:115:4070:0:0:0,-34.6184,-366.488	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:65:64,1:64:2272:1:36:0,-15.9687,-200.654	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:38:21,17:21:740:17:604:-43.2515,0,-55.4842	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/1:25:16,9:16:572:9:324:-21.9801,0,-44.2877	0/1:47:28,19:28:1004:19:676:-47.0196,0,-76.5275	0/1:42:16,26:16:572:26:928:-71.195,0,-39.1702	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951
chr08	28007415	.	ATGTT	ATGTA,AT	144330	PASS	AB=0.493077,0.500769;ABP=3.5515,3.01698;AC=162,24;AF=0.870968,0.129032;AN=186;AO=5774,662;CIGAR=4M1X,1M3D1M;DP=6474;DPB=6076.2;DPRA=0,0.845325;EPP=12532.4,1440.53;EPPR=7.35324;GTI=3;LEN=1,3;MEANALT=1.64516,2.24138;MQM=59.9404,46.5725;MQMR=60;NS=93;NUMALT=2;ODDS=0.766997;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=207041,23142;QR=72;RO=2;RPL=1,0;RPP=12532.4,1440.53;RPPR=7.35324;RPR=5773,662;RUN=1,1;SAF=5774,662;SAP=12541.1,1440.53;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42,0:0:0:42,0:1512,0:-136.375,-12.6433,0,-136.375,-12.6433,-136.375	1/1:51:0,51,0:0:0:51,0:1813,0:-162.085,-15.3525,0,-162.085,-15.3525,-162.085	1/1:104:0,104,0:0:0:104,0:3732,0:-336.08,-31.3071,0,-336.08,-31.3071,-336.08	1/1:143:0,143,0:0:0:143,0:5128,0:-461.661,-43.0473,0,-461.661,-43.0473,-461.661	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:13:0,13,0:0:0:13,0:468,0:-42.4534,-3.91339,0,-42.4534,-3.91339,-42.4534	1/1:92:0,90,0:0:0:90,0:3217,0:-289.391,-27.0927,0,-289.391,-27.0927,-289.391	1/1:66:0,66,0:0:0:66,0:2372,0:-213.737,-19.868,0,-213.737,-19.868,-213.737	1/1:92:0,92,0:0:0:92,0:3300,0:-297.218,-27.6948,0,-297.218,-27.6948,-297.218	1/1:150:0,150,0:0:0:150,0:5366,0:-483.069,-45.1545,0,-483.069,-45.1545,-483.069	1/1:35:0,35,0:0:0:35,0:1248,0:-112.622,-10.5361,0,-112.622,-10.5361,-112.622	1/1:92:0,92,0:0:0:92,0:3300,0:-297.218,-27.6948,0,-297.218,-27.6948,-297.218	1/1:93:0,93,0:0:0:93,0:3340,0:-300.816,-27.9958,0,-300.816,-27.9958,-300.816	1/1:84:0,84,0:0:0:84,0:3012,0:-271.309,-25.2865,0,-271.309,-25.2865,-271.309	1/1:71:0,70,0:0:0:70,0:2509,0:-225.8,-21.0721,0,-225.8,-21.0721,-225.8	1/1:59:0,59,0:0:0:59,0:2109,0:-190.077,-17.7608,0,-190.077,-17.7608,-190.077	1/1:58:0,58,0:0:0:58,0:2088,0:-188.19,-17.4597,0,-188.19,-17.4597,-188.19	1/1:44:0,43,0:0:0:43,0:1540,0:-138.584,-12.9443,0,-138.584,-12.9443,-138.584	1/1:39:0,39,0:0:0:39,0:1400,0:-125.808,-11.7402,0,-125.808,-11.7402,-125.808	1/1:42:0,42,0:0:0:42,0:1504,0:-135.655,-12.6433,0,-135.655,-12.6433,-135.655	1/1:151:0,149,0:0:0:149,0:5344,0:-480.731,-44.8535,0,-480.731,-44.8535,-480.731	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5117,-9.0309,0,-97.5117,-9.0309,-97.5117	1/1:39:0,39,0:0:0:39,0:1393,0:-125.668,-11.7402,0,-125.668,-11.7402,-125.668	1/2:67:0,57,10:0:0:57,10:2048,337:-194.296,-27.1995,-10.0408,-167.433,0,-164.423	1/1:72:0,67,3:0:0:67,3:2408,108:-216.687,-20.169,0,-209.544,-13.0036,-208.641	1/2:135:0,32,103:0:0:32,103:1148,3583:-382.248,-288.606,-278.973,-93.9969,0,-62.9908	1/1:178:0,178,0:0:0:178,0:6351,0:-571.678,-53.5833,0,-571.678,-53.5833,-571.678	1/2:34:0,16,18:0:0:16,18:576,629:-96.5928,-49.5836,-44.7671,-47.3585,0,-41.94	1/1:114:0,113,0:0:0:113,0:4064,0:-365.704,-34.0164,0,-365.704,-34.0164,-365.704	1/1:95:0,93,2:0:0:93,2:3333,72:-299.83,-27.9958,0,-294.067,-21.8792,-293.465	1/2:46:0,19,27:0:0:19,27:680,960:-133.536,-78.0831,-72.3635,-55.8092,0,-47.6814	1/2:4:0,2,2:0:0:2,2:72,72:-11.9945,-6.11657,-5.51451,-6.23466,0,-5.6326	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:2:0,1,1:0:0:1,1:36,36:-6.21106,-3.2724,-2.97137,-3.29724,0,-2.99621	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:8:0,7,1:0:0:7,1:237,36:-22.4693,-3.2724,-1.16519,-19.5518,0,-19.2508	1/1:214:0,213,0:0:0:213,0:7655,0:-688.652,-64.1194,0,-688.652,-64.1194,-688.652	1/1:51:0,51,0:0:0:51,0:1832,0:-165.161,-15.3525,0,-165.161,-15.3525,-165.161	1/2:60:0,36,24:0:0:36,24:1292,860:-175.354,-69.9654,-59.1284,-105.746,0,-98.5211	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:106:0,46,59:0:0:46,59:1652,2051:-298.484,-163.714,-149.866,-134.796,0,-117.035	1/2:25:0,11,14:0:0:11,14:396,492:-71.4928,-39.1732,-35.8619,-32.6714,0,-28.457	1/1:28:0,27,0:0:0:27,0:960,0:-86.356,-8.12781,0,-86.356,-8.12781,-86.356	1/1:52:0,52,0:0:0:52,0:1872,0:-168.759,-15.6536,0,-168.759,-15.6536,-168.759	1/1:63:0,62,0:0:0:62,0:2228,0:-200.424,-18.6639,0,-200.424,-18.6639,-200.424	1/1:69:0,69,0:0:0:69,0:2480,0:-223.442,-20.7711,0,-223.442,-20.7711,-223.442	1/1:34:0,33,0:0:0:33,0:1188,0:-106.869,-9.93399,0,-106.869,-9.93399,-106.869	1/2:79:0,20,59:0:0:20,59:716,2024:-221.91,-163.517,-157.496,-58.7471,0,-40.9863	1/1:71:0,71,0:0:0:71,0:2552,0:-229.93,-21.3731,0,-229.93,-21.3731,-229.93	1/1:95:0,95,0:0:0:95,0:3378,0:-304.234,-28.5979,0,-304.234,-28.5979,-304.234	1/1:190:0,190,0:0:0:190,0:6805,0:-612.515,-57.1957,0,-612.515,-57.1957,-612.515	1/2:6:0,4,2:0:0:4,2:144,72:-17.9677,-6.21747,-5.01335,-12.1095,0,-11.5074	1/2:68:0,26,42:0:0:26,42:917,1493:-195.188,-120.522,-112.695,-75.0178,0,-62.3746	1/2:46:0,32,13:0:0:32,13:1148,459:-130.741,-37.098,-27.4651,-93.6371,0,-89.7237	1/2:19:0,12,6:0:0:12,6:428,216:-52.3776,-17.4884,-13.876,-34.887,0,-33.0809	1/2:72:0,22,50:0:0:22,50:777,1743:-202.359,-139.082,-132.46,-63.6265,0,-48.575	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	.:.:.:.:.:.:.:.	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-7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chr08	28007455	.	G	T	11232.1	PASS	AB=0.519187;ABP=7.26011;AC=24;AF=0.129032;AN=186;AO=705;CIGAR=1X;DP=6456;DPB=6456;DPRA=0.914458;EPP=1533.9;EPPR=12480.3;GTI=2;LEN=1;MEANALT=1.03125;MQM=46.434;MQMR=59.9489;NS=93;NUMALT=1;ODDS=1.33958;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25176;QR=205259;RO=5750;RPL=705;RPP=1533.9;RPPR=12489;RPR=0;RUN=1;SAF=705;SAP=1533.9;SAR=0;SRF=5749;SRP=12480.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1484:0:0:0,-12.6433,-133.855	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.336	0/0:142:142,0:142:5092:0:0:0,-42.7463,-458.423	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/0:65:65,0:65:2308:0:0:0,-19.5669,-207.934	0/0:90:89,1:89:3169:1:36:0,-23.4944,-281.836	0/0:149:149,0:149:5291:0:0:0,-44.8535,-476.327	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.8	0/0:91:91,0:91:3243:0:0:0,-27.3937,-292.092	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/0:83:83,0:83:2960:0:0:0,-24.9855,-266.634	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.919	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.161	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.217	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:42:42,0:42:1492:0:0:0,-12.6433,-134.575	0/0:149:149,0:149:5310:0:0:0,-44.8535,-478.036	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:68:57,11:57:2023:11:396:-14.8408,0,-161.872	0/0:72:68,4:68:2424:4:144:0,-10.7931,-207.377	0/1:140:30,110:30:1067:110:3898:-304.365,0,-54.197	0/0:178:178,0:178:6388:0:0:0,-53.5833,-575.007	0/1:36:17,19:17:608:19:680:-48.5159,0,-44.2149	0/0:114:114,0:114:4056:0:0:0,-34.3174,-365.227	0/0:96:94,2:94:3348:2:72:0,-22.1802,-294.818	0/1:44:17,27:17:608:27:959:-72.999,0,-41.8063	0/1:4:2,2:2:72:2:72:-5.51451,0,-5.6326	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:2:1,1:1:36:1:36:-2.97137,0,-2.99621	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:8:6,2:6:216:2:72:-4.40488,0,-17.3823	0/0:213:213,0:213:7557:0:0:0,-64.1194,-680.039	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/1:62:36,26:36:1292:26:932:-64.8232,0,-97.9199	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:106:45,61:45:1616:61:2192:-162.031,0,-113.813	0/1:28:11,17:11:383:17:608:-45.1655,0,-26.3744	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.083	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:79:20,59:20:712:59:2097:-164.105,0,-40.6253	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	0/0:94:94,0:94:3328:0:0:0,-28.2968,-299.736	0/0:186:186,0:186:6630:0:0:0,-55.9916,-596.772	0/1:7:4,3:4:144:3:108:-7.89306,0,-11.2064	0/1:73:26,47:26:919:47:1684:-128.24,0,-61.051	0/1:45:32,13:32:1148:13:468:-28.6202,0,-90.0835	0/1:19:13,6:13:468:6:216:-13.9343,0,-36.7385	0/1:71:21,50:21:743:50:1788:-136.725,0,-45.8202	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	.:.:.:.:.:.:.:.	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:131:130,1:130:4672:1:36:0,-35.8484,-416.863	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:163:159,3:159:5702:3:103:0,-39.7255,-503.894	0/1:76:45,31:45:1612:31:1108:-75.478,0,-122.485	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0868	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/0:74:72,2:72:2576:2:72:0,-15.4567,-225.27	0/0:60:60,0:60:2130:0:0:0,-18.0618,-191.967	0/0:87:87,0:87:3093:0:0:0,-26.1896,-278.597	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:14:8,6:8:284:6:216:-15.4613,0,-21.6889	0/0:170:170,0:170:6049:0:0:0,-51.1751,-544.506	0/1:87:61,26:61:2180:26:927:-56.8581,0,-170.277	0/0:141:141,0:141:5037:0:0:0,-42.4452,-453.447	0/0:107:107,0:107:3812:0:0:0,-32.2102,-343.276	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:51:50,1:50:1796:1:36:0,-11.7738,-158.344	0/1:33:14,19:14:500:19:680:-51.1903,0,-35.4022	0/0:144:144,0:144:5134:0:0:0,-43.3483,-462.2	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:93:93,0:93:3286:0:0:0,-27.9958,-295.95	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:140:140,0:140:5004:0:0:0,-42.1442,-450.506	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:79:47,32:47:1680:32:1152:-79.0847,0,-127.706	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/1:51:32,19:32:1135:19:672:-44.4099,0,-87.1037	0/1:126:65,61:65:2315:61:2172:-152.076,0,-170.68	0/1:71:29,42:29:1035:42:1508:-113.935,0,-70.9834	0/0:87:86,1:86:3064:1:36:0,-22.766,-272.564	0/0:101:101,0:101:3600:0:0:0,-30.404,-324.208
chr08	28373401	.	T	C	13436.4	PASS	AB=0.540206;ABP=23.44;AC=24;AF=0.12766;AN=188;AO=808;CIGAR=1X;DP=6622;DPB=6622;DPRA=1.06136;EPP=1757.56;EPPR=12606.2;GTI=2;LEN=1;MEANALT=1;MQM=59.9554;MQMR=59.9587;NS=94;NUMALT=1;ODDS=4.43997;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28667;QR=207960;RO=5812;RPL=808;RPP=1757.56;RPPR=12597.6;RPR=0;RUN=1;SAF=808;SAP=1757.56;SAR=0;SRF=5811;SRP=12614.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:219:219,0:219:7867:0:0:0,-65.9256,-708.042	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.957	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.784	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:101:99,2:99:3539:2:72:0,-23.5673,-311.882	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.07	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:116:116,0:116:4128:0:0:0,-34.9195,-371.701	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:100:100,0:100:3566:0:0:0,-30.103,-321.148	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.184	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:116:116,0:116:4116:0:0:0,-34.9195,-370.622	0/0:100:99,1:99:3530:1:36:0,-26.5064,-314.313	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:150:150,0:150:5384:0:0:0,-45.1545,-484.683	0/1:39:25,14:25:891:14:504:-33.9579,0,-68.7686	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/1:231:112,119:112:4010:119:4213:-309.814,0,-291.549	0/0:194:194,0:194:6939:0:0:0,-58.3998,-624.572	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/0:182:181,0:181:6479:0:0:0,-54.4864,-582.968	0/0:99:98,1:98:3483:1:36:0,-26.2037,-310.012	0/1:132:49,83:49:1752:83:2920:-223.3,0,-117.601	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:128:128,0:128:4567:0:0:0,-38.5318,-411.192	0/0:105:100,5:100:3591:5:176:0,-15.4231,-307.208	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:188:83,105:83:2984:105:3728:-279.128,0,-212.198	0/1:17:5,12:5:180:12:417:-32.7427,0,-11.4346	0/0:114:113,1:113:4060:1:32:0,-31.1181,-362.386	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:38:38,0:38:1344:0:0:0,-11.4391,-121.26	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/0:92:92,0:92:3279:0:0:0,-27.6948,-295.33	0/1:135:70,65:70:2488:65:2320:-168.315,0,-183.532	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.435	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.882	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:72:30,42:30:1061:42:1495:-113.17,0,-74.1229	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:112:43,69:43:1540:69:2471:-188.928,0,-105.178	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/0:107:105,2:105:3736:2:72:0,-25.3735,-329.603	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/0:89:88,1:88:3160:1:36:0,-23.1934,-281.026	0/1:44:24,20:24:864:20:716:-51.5224,0,-64.8326	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:68:68,0:68:2433:0:0:0,-20.47,-219.219	0/0:138:138,0:138:4935:0:0:0,-41.5421,-444.257	0/0:22:21,1:21:747:1:32:0,-3.42335,-64.355	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:158:158,0:158:5649:0:0:0,-47.5627,-508.529	0/1:36:10,26:10:360:26:908:-71.1954,0,-21.9072	0/0:165:165,0:165:5890:0:0:0,-49.6699,-529.981	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/1:85:38,47:38:1349:47:1675:-125.431,0,-96.1207	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:83:82,0:82:2952:0:0:0,-24.6845,-265.552	0/1:72:34,38:34:1211:38:1359:-100.936,0,-87.6214	0/0:124:124,0:124:4439:0:0:0,-37.3277,-399.678	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:109:109,0:109:3905:0:0:0,-32.8123,-351.641	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:53:27,26:27:944:26:893:-64.7237,0,-69.3168	0/1:76:41,35:41:1467:35:1248:-89.746,0,-109.444	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:85:48,37:48:1720:37:1309:-92.5234,0,-129.498	0/1:39:11,28:11:392:28:991:-77.7634,0,-23.8799	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6197	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.321
chr08	28373422	.	G	A	128485	PASS	AB=0.460481;ABP=22.7476;AC=164;AF=0.87234;AN=188;AO=5803;CIGAR=1X;DP=6609;DPB=6609;DPRA=17.9375;EPP=12595.4;EPPR=1753.22;GTI=2;LEN=1;MEANALT=1;MQM=59.9557;MQMR=59.9727;NS=94;NUMALT=1;ODDS=4.44725;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206364;QR=28554;RO=806;RPL=5803;RPP=12604.1;RPPR=1753.22;RPR=0;RUN=1;SAF=5802;SAP=12595.4;SAR=1;SRF=806;SRP=1753.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:60:0,60:0:0:60:2128:-191.789,-18.0618,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:218:0,218:0:0:218:7771:-699.423,-65.6245,0	1/1:49:0,49:0:0:49:1739:-156.794,-14.7505,0	1/1:73:0,73:0:0:73:2592:-233.53,-21.9752,0	1/1:80:0,80:0:0:80:2826:-254.578,-24.0824,0	1/1:79:0,79:0:0:79:2800:-252.242,-23.7814,0	1/1:100:2,98:2:72:98:3479:-306.487,-23.2663,0	1/1:58:0,58:0:0:58:2057:-185.4,-17.4597,0	1/1:41:0,41:0:0:41:1455:-131.245,-12.3422,0	1/1:119:0,119:0:0:119:4242:-381.957,-35.8226,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:102:0,102:0:0:102:3627:-326.637,-30.7051,0	1/1:60:0,60:0:0:60:2132:-192.149,-18.0618,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:115:0,115:0:0:115:4093:-368.552,-34.6185,0	1/1:99:0,99:0:0:99:3508:-315.932,-29.802,0	1/1:73:0,73:0:0:73:2577:-232.179,-21.9752,0	1/1:154:0,154:0:0:154:5508:-495.84,-46.3586,0	0/1:40:15,25:15:532:25:872:-66.7552,0,-36.1719	1/1:75:0,75:0:0:75:2669:-240.454,-22.5773,0	0/1:228:116,112:116:4128:112:3993:-290.922,0,-303.069	1/1:191:0,191:0:0:191:6753:-607.846,-57.4967,0	0/1:19:9,10:9:309:10:352:-26.2986,0,-22.4211	1/1:177:0,177:0:0:177:6269:-563.476,-53.2823,0	1/1:97:1,96:1:36:96:3444:-306.504,-25.6016,0	0/1:129:81,48:81:2858:48:1688:-113.372,0,-218.623	0/1:3:2,1:2:68:1:27:-1.79669,0,-5.55462	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:131:0,131:0:0:131:4674:-420.819,-39.4349,0	1/1:105:5,100:5:180:100:3555:-303.607,-15.0561,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:188:106,82:106:3749:82:2912:-205.721,0,-281.019	0/1:20:12,8:12:410:8:284:-19.8828,0,-31.2059	1/1:114:0,114:0:0:114:4047:-364.418,-34.3174,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	1/1:105:0,105:0:0:105:3739:-336.711,-31.6082,0	1/1:88:0,88:0:0:88:3096:-278.869,-26.4906,0	0/1:139:69,70:69:2463:70:2504:-183.769,0,-179.975	1/1:56:0,56:0:0:56:2000:-180.188,-16.8577,0	1/1:80:0,80:0:0:80:2856:-257.278,-24.0824,0	1/1:154:2,152:2:72:152:5358:-475.522,-39.5219,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:73:43,30:43:1535:30:1055:-73.2825,0,-116.467	1/1:81:0,81:0:0:81:2869:-258.447,-24.3834,0	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:110:70,40:70:2478:40:1436:-96.4244,0,-190.16	1/1:29:0,29:0:0:29:1022:-92.2921,-8.72987,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:95:0,95:0:0:95:3387:-305.046,-28.5979,0	1/1:107:2,105:2:72:105:3737:-329.695,-25.3735,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	1/1:94:1,93:1:36:93:3276:-291.464,-24.6985,0	0/1:44:20,24:20:707:24:855:-64.0202,0,-50.7093	1/1:55:0,55:0:0:55:1952:-175.956,-16.5567,0	1/1:75:0,75:0:0:75:2663:-239.912,-22.5773,0	1/1:139:0,139:0:0:139:4949:-445.518,-41.8432,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:46:0,46:0:0:46:1613:-145.457,-13.8474,0	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	1/1:149:0,149:0:0:149:5312:-478.217,-44.8535,0	0/1:34:24,10:24:856:10:347:-21.3286,0,-67.1261	1/1:167:0,167:0:0:167:5918:-532.719,-50.272,0	1/1:105:0,105:0:0:105:3713:-334.374,-31.6082,0	0/1:84:47,37:47:1659:37:1328:-94.5357,0,-124.31	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:85:0,85:0:0:85:3031:-273.02,-25.5876,0	0/1:71:38,33:38:1325:33:1180:-85.1349,0,-98.1744	1/1:124:0,124:0:0:124:4439:-399.674,-37.3277,0	1/1:40:0,40:0:0:40:1429:-128.906,-12.0412,0	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:109:0,109:0:0:109:3912:-352.272,-32.8123,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:53:24,29:24:864:29:1036:-77.5993,0,-62.128	0/1:78:36,42:36:1274:42:1503:-112.081,0,-91.4811	1/1:34:0,34:0:0:34:1215:-109.656,-10.235,0	0/1:83:35,48:35:1235:48:1686:-127.039,0,-86.468	0/1:41:29,12:29:1032:12:428:-26.5166,0,-80.8512	1/1:29:0,29:0:0:29:1020:-92.056,-8.72987,0	1/1:46:0,46:0:0:46:1633:-147.25,-13.8474,0
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chr08	28379094	.	G	A	16863.2	PASS	AB=0.460526;ABP=33.8681;AC=22;AF=0.117021;AN=188;AO=1065;CIGAR=1X;DP=11684;DPB=11684;DPRA=0.949272;EPP=2306.95;EPPR=22975.1;GTI=0;LEN=1;MEANALT=1;MQM=59.9484;MQMR=59.9868;NS=94;NUMALT=1;ODDS=21.8435;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37974;QR=379425;RO=10615;RPL=1064;RPP=2306.95;RPPR=22975.1;RPR=1;RUN=1;SAF=0;SAP=2315.63;SAR=1065;SRF=0;SRP=23053.2;SRR=10615;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2284:0:0:0,-19.5669,-205.797	0/0:212:212,0:212:7554:0:0:0,-63.8184,-679.901	0/0:155:155,0:155:5551:0:0:0,-46.6596,-499.713	0/0:141:141,0:141:5029:0:0:0,-42.4452,-452.757	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.135	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/0:263:263,0:263:9371:0:0:0,-79.1709,-843.354	0/0:185:185,0:185:6628:0:0:0,-55.6905,-596.598	0/0:131:131,0:131:4668:0:0:0,-39.4349,-420.281	0/0:167:167,0:167:5955:0:0:0,-50.272,-536.057	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/0:85:85,0:85:3033:0:0:0,-25.5875,-273.199	0/0:114:113,1:113:4022:1:36:0,-30.7191,-358.57	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:233:233,0:233:8360:0:0:0,-70.14,-752.403	0/0:182:182,0:182:6507:0:0:0,-54.7875,-585.715	0/0:182:182,0:182:6503:0:0:0,-54.7875,-585.355	0/0:76:76,0:76:2710:0:0:0,-22.8783,-244.143	0/1:147:88,59:88:3127:59:2076:-142.856,0,-237.406	0/0:151:150,1:150:5358:1:36:0,-41.8573,-478.754	0/1:371:204,167:204:7286:167:5960:-424.823,0,-544.109	0/0:299:299,0:299:10701:0:0:0,-90.008,-962.996	0/1:35:17,18:17:608:18:644:-47.7545,0,-44.516	0/0:324:324,0:324:11586:0:0:0,-97.5337,-1042.61	0/0:186:183,3:183:6552:3:108:0,-45.9164,-579.687	0/1:120:74,46:74:2634:46:1656:-113.205,0,-201.183	0/1:15:6,9:6:212:9:324:-24.9904,0,-14.9093	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:35:12,23:12:428:23:824:-63.9473,0,-28.3228	0/0:257:257,0:257:9189:0:0:0,-77.3647,-826.981	0/0:277:276,1:276:9843:1:36:0,-79.787,-882.218	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:129:78,51:78:2808:51:1820:-125.248,0,-214.126	0/1:37:15,22:15:540:22:792:-60.4629,0,-37.7984	0/0:182:182,0:182:6488:0:0:0,-54.7875,-584.006	0/0:77:77,0:77:2750:0:0:0,-23.1793,-247.738	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.953	0/0:172:172,0:172:6163:0:0:0,-51.7772,-554.767	0/0:165:164,1:164:5837:1:36:0,-46.0717,-521.844	0/1:158:73,85:73:2616:85:3007:-223.295,0,-188.125	0/0:182:182,0:182:6536:0:0:0,-54.7875,-588.32	0/0:139:139,0:139:4992:0:0:0,-41.8432,-449.426	0/0:315:314,0:314:11253:0:0:0,-94.5234,-1012.44	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/1:155:95,60:95:3389:60:2145:-146.655,0,-258.075	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/1:37:20,17:20:705:17:612:-44.2753,0,-52.6347	0/1:167:88,79:88:3148:79:2822:-203.946,0,-233.274	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:28:28,0:28:980:0:0:0,-8.42884,-88.5102	0/0:158:158,0:158:5635:0:0:0,-47.5627,-507.27	0/0:137:134,3:134:4800:3:108:0,-31.1659,-422.08	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:249:249,0:249:8875:0:0:0,-74.9565,-798.737	0/0:157:155,2:155:5538:2:72:0,-40.425,-491.708	0/1:135:66,69:66:2345:69:2414:-176.86,0,-170.669	0/0:100:99,1:99:3548:1:36:0,-26.5047,-315.93	0/0:165:165,0:165:5895:0:0:0,-49.6699,-530.661	0/0:264:264,0:264:9468:0:0:0,-79.4719,-852.077	0/0:41:40,0:40:1423:0:0:0,-12.0412,-128.007	0/0:104:104,0:104:3704:0:0:0,-31.3071,-333.561	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.886	0/1:22:9,13:9:324:13:464:-35.4748,0,-22.8832	0/0:213:213,0:213:7602:0:0:0,-64.1194,-683.594	0/1:108:56,52:56:2008:52:1853:-134.537,0,-148.482	0/0:202:201,0:201:7198:0:0:0,-60.507,-647.557	0/0:193:193,0:193:6928:0:0:0,-58.0988,-623.584	0/1:169:114,55:114:4060:55:1961:-125.889,0,-314.712	0/0:122:122,0:122:4357:0:0:0,-36.7257,-392.304	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:177:177,0:177:6310:0:0:0,-53.2823,-567.995	0/1:92:52,40:52:1872:40:1432:-101.483,0,-141.064	0/0:222:222,0:222:7927:0:0:0,-66.8287,-713.454	0/0:116:116,0:116:4151:0:0:0,-34.9195,-373.773	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.252	0/0:153:151,2:151:5408:2:72:0,-39.2209,-480.013	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:70:39,31:39:1392:31:1104:-78.5985,0,-104.507	0/1:80:37,43:37:1320:43:1548:-115.531,0,-95.0195	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:117:56,61:56:1986:61:2188:-161.961,0,-143.793	0/1:66:25,41:25:879:41:1468:-112.478,0,-59.5588	0/0:144:143,0:143:5122:0:0:0,-43.0473,-460.761	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016
chr08	28386437	.	G	A	1650.96	PASS	AB=0.161619;ABP=4107.52;AC=19;AF=0.101064;AN=188;AO=706;CIGAR=1X;DP=19947;DPB=19947;DPRA=1.28191;EPP=1484.4;EPPR=40692.6;GTI=11;LEN=1;MEANALT=1.08824;MQM=59.5482;MQMR=59.9433;NS=94;NUMALT=1;ODDS=3.94781;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=24810;QR=687999;RO=19235;RPL=6;RPP=1484.4;RPPR=40692.6;RPR=700;RUN=1;SAF=706;SAP=1536.07;SAR=0;SRF=19235;SRP=41771.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:370:370,0:370:13180:0:0:0,-111.381,-1185.99	0/0:269:268,0:268:9563:0:0:0,-80.676,-860.205	0/0:514:514,0:514:18374:0:0:0,-154.729,-1653.24	0/0:144:144,0:144:5176:0:0:0,-43.3483,-465.978	0/0:154:154,0:154:5488:0:0:0,-46.3586,-493.841	0/0:246:246,0:246:8797:0:0:0,-74.0534,-791.715	0/0:251:250,1:250:8930:1:36:0,-71.9603,-800.085	0/0:142:142,0:142:5072:0:0:0,-42.7463,-456.626	0/0:295:295,0:295:10545:0:0:0,-88.8038,-948.96	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.66	0/0:155:155,0:155:5539:0:0:0,-46.6596,-498.635	0/0:146:146,0:146:5236:0:0:0,-43.9504,-471.376	0/0:134:134,0:134:4800:0:0:0,-40.338,-432.155	0/0:122:121,1:121:4339:1:32:0,-33.5263,-387.481	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.316	0/0:205:205,0:205:7343:0:0:0,-61.7111,-660.909	0/0:105:105,0:105:3763:0:0:0,-31.6081,-338.868	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:303:303,0:303:10838:0:0:0,-91.2121,-975.318	0/0:290:290,0:290:10369:0:0:0,-87.2987,-933.117	0/0:307:307,0:307:10972:0:0:0,-92.4162,-987.26	0/0:103:103,0:103:3683:0:0:0,-31.0061,-331.673	0/1:142:120,22:120:4288:22:769:-26.7731,0,-343.139	0/0:130:130,0:130:4615:0:0:0,-39.1339,-415.5	0/1:613:525,87:525:18755:87:3074:-92.2869,0,-1502.12	0/0:353:353,0:353:12658:0:0:0,-106.264,-1139.04	0/0:86:78,8:78:2791:8:279:0,-0.445702,-225.987	0/0:528:527,0:527:18895:0:0:0,-158.643,-1699.74	0/0:484:470,14:470:16784:14:492:0,-101.086,-1465.59	0/1:303:247,56:247:8829:56:1962:-85.6312,0,-703.382	0/0:27:25,2:25:900:2:68:0,-1.6701,-74.8633	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:18:16,2:16:576:2:72:-1.41818,0,-46.7564	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:13:12,1:12:432:1:36:0,-0.315115,-35.6229	0/0:492:492,0:492:17572:0:0:0,-148.107,-1580.99	0/0:529:527,1:527:18858:1:32:0,-156.084,-1693.56	0/0:127:127,0:127:4555:0:0:0,-38.2308,-410.097	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:334:290,44:290:10366:44:1525:-36.9868,0,-831.772	0/1:81:71,10:71:2552:10:356:-7.99782,0,-205.547	0/0:296:295,0:295:10535:0:0:0,-88.8038,-947.641	0/0:141:141,0:141:5056:0:0:0,-42.4452,-455.184	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.696	0/0:182:182,0:182:6515:0:0:0,-54.7875,-586.43	0/0:240:240,0:240:8593:0:0:0,-72.2472,-773.364	0/1:416:349,66:349:12478:66:2313:-83.0311,0,-997.565	0/0:244:244,0:244:8735:0:0:0,-73.4513,-786.131	0/0:369:366,3:366:13100:3:108:0,-101.005,-1168.72	0/0:412:411,1:411:14702:1:36:0,-120.426,-1319.05	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:312:252,60:252:8988:60:2088:-93.9163,0,-714.951	0/0:152:152,0:152:5435:0:0:0,-45.7566,-489.276	0/1:44:39,5:39:1391:5:180:-3.30675,0,-112.235	0/1:325:275,50:275:9823:50:1768:-60.8879,0,-786.178	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.878	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:194:194,0:194:6940:0:0:0,-58.3998,-624.664	0/0:299:299,0:299:10720:0:0:0,-90.008,-964.694	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:632:630,2:630:22554:2:72:0,-183.414,-2022.32	0/0:385:384,1:384:13719:1:36:0,-112.298,-1230.88	0/1:246:212,34:212:7583:34:1201:-34.3178,0,-608.456	0/0:180:179,1:179:6410:1:36:0,-50.5871,-573.387	0/0:366:366,0:366:13072:0:0:0,-110.177,-1175.59	0/0:280:280,0:280:10064:0:0:0,-84.2884,-905.672	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.756	0/0:205:205,0:205:7343:0:0:0,-61.7111,-660.908	0/0:179:179,0:179:6411:0:0:0,-53.8844,-577.021	0/1:48:38,10:38:1355:10:352:-17.5688,0,-107.799	0/0:273:273,0:273:9737:0:0:0,-82.1812,-876.274	0/1:183:155,28:155:5527:28:992:-34.4896,0,-442.456	0/0:282:282,0:282:10046:0:0:0,-84.8905,-904.074	0/0:516:516,0:516:18483:0:0:0,-155.331,-1662.91	0/1:217:187,30:187:6688:30:1045:-29.0261,0,-536.674	0/0:318:317,1:317:11347:1:36:0,-92.1293,-1017.5	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3145	0/0:270:270,0:270:9658:0:0:0,-81.2781,-869.161	0/1:191:152,39:152:5438:39:1350:-64.2955,0,-432.051	0/0:314:314,0:314:11194:0:0:0,-94.5234,-1007.34	0/0:245:244,1:244:8751:1:32:0,-70.553,-784.375	0/0:121:121,0:121:4327:0:0:0,-36.4246,-389.606	0/0:186:186,0:186:6652:0:0:0,-55.9916,-598.756	0/0:296:296,0:296:10596:0:0:0,-89.1049,-953.405	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.308	0/1:207:177,30:177:6356:30:1060:-33.3875,0,-509.585	0/1:139:114,25:114:4096:25:892:-38.7565,0,-326.981	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:173:143,30:143:5111:30:1068:-44.3493,0,-408.037	0/1:135:96,39:96:3426:39:1376:-83.4907,0,-267.91	0/0:164:164,0:164:5855:0:0:0,-49.3689,-526.972	0/0:213:212,1:212:7596:1:36:0,-60.5211,-680.071
chr08	28386580	.	C	T	33594.3	PASS	AB=0.272271;ABP=4943.13;AC=93;AF=0.494681;AN=188;AO=2998;CIGAR=1X;DP=11083;DPB=11083;DPRA=17.0138;EPP=6504.4;EPPR=17555;GTI=25;LEN=1;MEANALT=1.02151;MQM=59.9787;MQMR=59.9944;NS=94;NUMALT=1;ODDS=0.874299;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107115;QR=288917;RO=8083;RPL=2998;RPP=6513.08;RPPR=17555;RPR=0;RUN=1;SAF=1;SAP=6504.4;SAR=2997;SRF=0;SRP=17555;SRR=8083;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:109:64,45:64:2300:45:1612:-112.558,0,-174.449	0/1:106:93,13:93:3324:13:464:-10.1883,0,-267.469	0/1:202:118,84:118:4244:84:2998:-209.206,0,-321.329	0/1:177:124,53:124:4448:53:1896:-117.636,0,-347.207	0/1:50:45,5:45:1616:5:176:-1.13352,0,-130.679	0/1:44:34,10:34:1212:10:360:-19.499,0,-96.141	0/1:59:47,12:47:1688:12:432:-21.4604,0,-134.446	0/1:213:151,62:151:5396:62:2228:-136.664,0,-421.65	0/1:164:109,55:109:3862:55:1968:-128.026,0,-298.406	0/1:146:95,51:95:3404:51:1788:-117.246,0,-262.622	0/1:123:86,37:86:3067:37:1332:-83.1557,0,-239.232	0/1:190:130,60:130:4641:60:2152:-136.752,0,-360.656	0/1:141:118,23:118:4232:23:824:-32.0381,0,-338.614	0/1:119:79,40:79:2832:40:1440:-94.0752,0,-219.296	0/1:119:98,21:98:3503:21:752:-32.1837,0,-279.658	0/1:124:89,35:89:3157:35:1260:-76.3778,0,-247.027	0/1:92:64,28:64:2300:28:1008:-63.3416,0,-179.566	0/1:59:48,11:48:1719:11:396:-18.222,0,-137.189	0/1:73:64,9:64:2296:9:324:-7.49453,0,-184.926	0/1:69:57,12:57:2040:12:422:-17.5439,0,-163.101	0/1:209:175,34:175:6276:34:1220:-47.1915,0,-502.017	0/1:29:19,10:19:676:10:349:-23.0149,0,-52.4381	0/1:105:68,37:68:2432:37:1324:-87.8539,0,-187.527	0/1:85:50,35:50:1766:35:1241:-86.405,0,-133.632	0/1:46:28,18:28:1008:18:648:-44.8045,0,-77.189	0/1:274:223,51:223:7956:51:1828:-82.3187,0,-633.577	0/1:270:171,99:171:6120:99:3540:-237.531,0,-469.623	0/1:68:57,11:57:2044:11:392:-15.15,0,-163.762	0/1:95:79,16:79:2824:16:568:-22.7466,0,-225.801	0/1:139:104,35:104:3732:35:1256:-71.5021,0,-294.237	0/1:141:89,52:89:3153:52:1858:-125.055,0,-241.55	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:6:5,1:5:172:1:36:-1.79209,0,-14.0118	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:9:7,2:7:248:2:68:-3.74844,0,-19.9549	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:354:292,62:292:10462:62:2217:-93.2289,0,-834.93	0/1:118:78,40:78:2750:40:1402:-90.9516,0,-212.219	0/1:115:95,20:95:3387:20:720:-30.5103,0,-270.427	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:51:42,9:42:1504:9:324:-14.1533,0,-120.302	0/1:82:52,30:52:1864:30:1080:-72.8288,0,-143.355	0/1:155:109,46:109:3873:46:1648:-101.949,0,-302.106	0/1:164:115,49:115:4124:49:1760:-109.315,0,-321.975	0/1:125:83,42:83:2950:42:1497:-97.3947,0,-228.105	0/1:204:148,56:148:5280:56:2000:-118.864,0,-413.928	0/1:150:98,52:98:3491:52:1842:-120.904,0,-269.247	0/1:113:87,26:87:3112:26:936:-50.5431,0,-246.291	0/0:106:97,9:97:3446:9:324:0,-2.40332,-280.845	0/1:123:108,14:108:3876:14:500:-8.25088,0,-311.948	0/1:82:71,11:71:2525:11:396:-11.2983,0,-202.816	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:132:85,47:85:3041:47:1673:-111.119,0,-234.182	0/1:82:49,33:49:1756:33:1180:-81.8236,0,-133.64	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:158:99,59:99:3525:59:2118:-143.326,0,-269.897	0/1:33:27,6:27:968:6:216:-9.85652,0,-77.5034	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7413	0/1:151:111,40:111:3961:40:1421:-82.7299,0,-311.225	0/1:236:166,70:166:5923:70:2512:-155.289,0,-462.132	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:257:174,83:174:6187:83:2941:-187.558,0,-479.563	0/1:264:205,59:205:7291:59:2116:-111.237,0,-576.77	0/1:144:103,41:103:3661:41:1472:-89.4278,0,-286.346	0/1:67:47,20:47:1688:20:712:-44.2376,0,-132.038	0/1:292:213,79:213:7629:79:2810:-165.238,0,-598.658	0/1:161:109,52:109:3912:52:1845:-117.862,0,-303.806	0/1:73:52,21:52:1872:21:756:-46.392,0,-146.784	0/1:76:60,16:60:2156:16:572:-28.9351,0,-171.429	0/1:114:80,34:80:2880:34:1224:-76.1496,0,-225.118	0/1:43:25,18:25:892:18:633:-44.3508,0,-67.6554	0/1:198:146,51:146:5224:51:1821:-104.546,0,-410.675	0/1:103:81,22:81:2892:22:788:-40.2387,0,-229.511	0/1:283:182,101:182:6497:101:3609:-239.823,0,-499.624	0/1:123:76,47:76:2724:47:1684:-114.82,0,-208.376	0/1:141:98,43:98:3524:43:1540:-96.4479,0,-274.923	0/1:111:91,20:91:3245:20:716:-31.3534,0,-258.856	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:70:56,14:56:2008:14:500:-24.2641,0,-159.921	0/1:69:49,20:49:1756:20:686:-41.2847,0,-137.553	0/1:190:144,46:144:5164:46:1652:-91.7728,0,-407.704	0/1:112:86,26:86:3079:26:928:-50.1229,0,-243.622	0/1:134:107,27:107:3840:27:964:-46.7388,0,-305.457	0/1:85:60,25:60:2156:25:874:-53.386,0,-168.719	0/1:218:175,43:175:6257:43:1544:-73.6285,0,-497.599	0/1:43:36,7:36:1274:7:252:-10.0847,0,-102.017	0/1:139:100,39:100:3574:39:1371:-81.8435,0,-280.023	0/1:145:105,40:105:3756:40:1436:-85.8883,0,-294.591	0/1:82:59,23:59:2116:23:828:-50.1597,0,-166.024	0/1:216:174,42:174:6220:42:1504:-70.6321,0,-494.875	0/1:142:124,18:124:4435:18:648:-15.9052,0,-356.575	0/1:114:76,38:76:2720:38:1347:-87.2112,0,-210.726	0/1:204:134,70:134:4774:70:2516:-165.281,0,-368.408
chr08	28386586	.	C	T	52553.1	PASS	AB=0.347257;ABP=2249.12;AC=93;AF=0.494681;AN=188;AO=3849;CIGAR=1X;DP=11087;DPB=11087;DPRA=39.7276;EPP=8361.01;EPPR=15700.6;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.981;MQMR=59.9907;NS=94;NUMALT=1;ODDS=80.8942;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137309;QR=258628;RO=7233;RPL=3849;RPP=8361.01;RPPR=15709.3;RPR=0;RUN=1;SAF=0;SAP=8361.01;SAR=3849;SRF=1;SRP=15700.6;SRR=7232;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:111:84,27:84:3008:27:964:-53.6625,0,-237.537	0/1:108:41,67:41:1472:67:2377:-180.898,0,-100.265	0/1:200:144,56:144:5172:56:2008:-120.787,0,-405.143	0/1:178:96,82:96:3456:82:2927:-210.082,0,-257.667	0/1:50:19,31:19:684:31:1108:-84.9795,0,-46.8388	0/1:44:33,11:33:1184:11:388:-22.012,0,-93.623	0/1:58:23,35:23:828:35:1245:-94.893,0,-57.3844	0/1:211:129,82:129:4602:82:2917:-199.247,0,-350.825	0/1:164:109,55:109:3878:55:1972:-128.386,0,-299.844	0/1:144:97,47:97:3480:47:1669:-107.145,0,-270.062	0/1:123:74,49:74:2603:49:1764:-122.017,0,-197.488	0/1:190:116,74:116:4163:74:2631:-179.843,0,-317.655	0/1:143:93,50:93:3336:50:1792:-118.515,0,-257.41	0/1:119:80,39:80:2860:39:1400:-90.4766,0,-221.815	0/1:119:64,55:64:2296:55:1945:-139.502,0,-171.079	0/1:125:77,48:77:2764:48:1716:-117.097,0,-211.368	0/1:91:66,25:66:2376:25:892:-53.206,0,-186.704	0/1:60:34,26:34:1201:26:925:-65.4611,0,-90.3319	0/1:77:45,32:45:1608:32:1148:-80.4505,0,-121.795	0/1:69:40,29:40:1436:29:1036:-72.7828,0,-108.767	0/1:211:130,81:130:4656:81:2882:-196.096,0,-355.684	0/1:29:18,11:18:648:11:396:-27.2529,0,-49.922	0/1:105:73,32:73:2628:32:1148:-72.0217,0,-205.158	0/1:84:56,27:56:2000:27:960:-61.3711,0,-154.929	0/1:46:31,15:31:1104:15:540:-35.0892,0,-85.8233	0/1:271:212,59:212:7556:59:2104:-108.05,0,-598.498	0/1:269:169,100:169:6060:100:3573:-240.799,0,-464.525	0/1:67:48,19:48:1728:19:680:-41.3602,0,-135.636	0/1:96:56,39:56:1982:39:1388:-96.2613,0,-149.693	0/1:140:79,61:79:2821:61:2172:-153.602,0,-211.983	0/1:140:121,19:121:4269:19:684:-19.7461,0,-342.241	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/1:9:2,7:2:57:7:251:-20.2286,0,-2.70404	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:353:216,137:216:7707:137:4897:-334.618,0,-587.398	0/1:116:66,50:66:2334:50:1755:-123.309,0,-175.397	0/1:112:67,45:67:2400:45:1600:-110.575,0,-182.541	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:51:37,14:37:1324:14:496:-29.6217,0,-104.11	0/1:82:66,16:66:2372:16:572:-27.129,0,-189.053	0/1:152:97,55:97:3476:55:1965:-131.368,0,-267.295	0/1:164:112,52:112:3994:52:1857:-118.039,0,-310.279	0/1:132:93,39:93:3313:39:1400:-86.5632,0,-258.652	0/1:205:133,72:133:4693:72:2554:-168.396,0,-360.817	0/1:154:103,51:103:3708:51:1824:-118.082,0,-287.561	0/1:110:89,21:89:3165:21:744:-34.171,0,-251.961	0/1:106:44,62:44:1557:62:2196:-165.997,0,-108.511	0/1:123:59,64:59:2124:64:2247:-165.462,0,-154.402	0/1:81:35,45:35:1260:45:1608:-120.724,0,-89.4187	0/1:9:2,7:2:72:7:235:-18.7679,0,-4.12745	0/1:134:111,23:111:3992:23:805:-32.4295,0,-319.13	0/1:82:61,21:61:2188:21:748:-42.9608,0,-172.501	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/1:157:121,36:121:4337:36:1284:-68.6017,0,-343.241	0/1:34:14,20:14:496:20:720:-54.8938,0,-34.7392	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:16:11,5:11:388:5:180:-11.7356,0,-30.4409	0/1:153:92,61:92:3266:61:2180:-150.409,0,-248.101	0/1:233:151,82:151:5432:82:2927:-193.521,0,-418.866	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:255:160,95:160:5744:95:3400:-229.452,0,-440.312	0/1:262:158,104:158:5642:104:3705:-254.782,0,-429.028	0/1:145:121,24:121:4313:24:860:-34.0725,0,-344.697	0/1:68:39,29:39:1404:29:1040:-73.4443,0,-106.189	0/1:287:209,78:209:7489:78:2779:-163.918,0,-587.653	0/1:161:103,58:103:3681:58:2076:-138.645,0,-283.026	0/1:74:49,25:49:1756:25:892:-58.3235,0,-136.048	0/1:76:39,37:39:1396:37:1332:-97.3041,0,-103.061	0/1:116:71,44:71:2533:44:1584:-107.873,0,-193.242	0/1:42:36,6:36:1296:6:216:-7.14725,0,-104.301	0/1:196:141,55:141:5056:55:1932:-115.152,0,-396.182	0/1:101:73,28:73:2605:28:996:-59.5509,0,-204.293	0/1:279:181,98:181:6481:98:3489:-230.233,0,-499.341	0/1:125:72,53:72:2592:53:1892:-132.93,0,-195.899	0/1:142:108,34:108:3812:34:1211:-66.5493,0,-300.529	0/1:112:68,43:68:2440:43:1532:-104.438,0,-186.117	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/1:70:43,27:43:1533:27:972:-66.7258,0,-117.189	0/1:70:58,12:58:2076:12:428:-17.7867,0,-166.038	0/1:187:117,70:117:4177:70:2481:-167.25,0,-319.819	0/1:114:68,46:68:2429:46:1656:-115.011,0,-184.546	0/1:137:78,59:78:2789:59:2112:-149.108,0,-210.008	0/1:85:51,34:51:1832:34:1216:-84.159,0,-139.573	0/1:221:122,99:122:4369:99:3552:-253.36,0,-326.854	0/1:41:20,21:20:716:21:756:-56.025,0,-52.4255	0/1:143:109,34:109:3893:34:1208:-65.9788,0,-307.516	0/1:141:109,32:109:3915:32:1152:-61.5449,0,-310.096	0/1:83:44,39:44:1554:39:1404:-101.674,0,-115.162	0/1:220:176,44:176:6282:44:1576:-75.905,0,-499.246	0/1:143:121,22:121:4352:22:792:-28.5584,0,-348.805	0/1:111:81,30:81:2908:30:1076:-63.7385,0,-228.541	0/1:207:127,80:127:4556:80:2848:-194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chr08	28386723	.	A	G	175536	PASS	AB=0.656028;ABP=3156.66;AC=94;AF=0.5;AN=188;AO=9786;CIGAR=1X;DP=14917;DPB=14917;DPRA=160.387;EPP=21253;EPPR=11136.1;GTI=11;LEN=1;MEANALT=1.04301;MQM=59.9863;MQMR=59.9832;NS=94;NUMALT=1;ODDS=1.63133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=346241;QR=182002;RO=5127;RPL=0;RPP=21253;RPPR=11127.5;RPR=9786;RUN=1;SAF=0;SAP=21253;SAR=9786;SRF=1;SRP=11127.5;SRR=5126;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:129:34,95:34:1216:95:3348:-262.704,0,-70.9137	0/1:65:27,38:27:968:38:1336:-100.97,0,-67.8704	0/1:216:57,159:57:2044:159:5635:-442.25,0,-119.209	0/1:378:121,256:121:4317:256:9100:-705.132,0,-274.858	0/1:101:31,70:31:1112:70:2476:-192.687,0,-69.9873	0/1:53:16,37:16:572:37:1308:-102.066,0,-35.8588	0/1:158:54,104:54:1919:104:3703:-285.91,0,-125.424	0/1:200:50,150:50:1784:150:5323:-419,0,-100.637	0/1:223:57,166:57:2008:166:5866:-460.925,0,-113.861	0/1:152:42,110:42:1500:110:3906:-305.976,0,-89.538	0/1:129:42,87:42:1500:87:3073:-237.965,0,-96.4617	0/1:246:86,160:86:3011:160:5585:-428.726,0,-197.167	0/1:139:55,84:55:1963:84:2977:-226.319,0,-135.101	0/1:102:37,65:37:1307:65:2283:-175.025,0,-87.2257	0/1:108:48,60:48:1707:60:2129:-159.367,0,-121.404	0/1:125:47,78:47:1661:78:2791:-213.801,0,-112.147	0/1:60:24,36:24:829:36:1273:-96.8091,0,-56.8324	0/1:52:25,27:25:891:27:964:-71.4233,0,-64.8552	0/1:51:24,27:24:864:27:964:-71.7243,0,-62.73	0/1:244:91,153:91:3255:153:5428:-415.187,0,-219.719	0/1:149:66,83:66:2337:83:2883:-214.852,0,-165.735	0/1:172:68,104:68:2448:104:3639:-275.939,0,-168.797	0/1:243:84,159:84:2987:159:5575:-428.727,0,-195.91	0/1:127:47,80:47:1671:80:2860:-219.407,0,-112.446	0/1:198:79,119:79:2808:119:4241:-322.267,0,-193.354	0/1:397:128,268:128:4552:268:9457:-731.616,0,-290.368	0/1:384:133,251:133:4726:251:8913:-686.559,0,-309.906	0/1:76:33,43:33:1171:43:1530:-115.113,0,-82.8184	0/1:409:126,283:126:4524:283:10077:-783.747,0,-284.205	0/1:225:85,140:85:3051:140:4957:-378.549,0,-207.086	0/1:180:61,119:61:2167:119:4203:-324.266,0,-141.111	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:28:11,17:11:375:17:608:-46.6232,0,-25.649	0/1:5:1,4:1:32:4:144:-11.8085,0,-1.69416	0/1:13:3,10:3:108:10:347:-27.6502,0,-6.16178	0/1:22:6,16:6:216:16:564:-44.4676,0,-13.1679	0/1:421:184,237:184:6553:237:8304:-620.646,0,-463.121	0/1:329:121,208:121:4323:208:7350:-562.513,0,-290.207	0/1:92:46,46:46:1611:46:1629:-119.202,0,-117.581	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:223:76,147:76:2677:147:5166:-397.954,0,-174.046	0/1:61:19,42:19:671:42:1464:-113.689,0,-42.353	0/1:287:99,188:99:3527:188:6692:-515.961,0,-231.245	0/1:100:38,62:38:1368:62:2190:-167.262,0,-93.3178	0/1:137:58,79:58:2055:79:2750:-206.502,0,-143.98	0/1:306:74,232:74:2643:232:8179:-644.015,0,-146.001	0/1:118:39,79:39:1383:79:2772:-214.198,0,-89.2465	0/1:223:85,138:85:3023:138:4872:-371.492,0,-205.172	0/1:166:56,110:56:1999:110:3911:-302.214,0,-130.212	0/1:134:60,74:60:2137:74:2637:-197.237,0,-152.258	0/1:236:70,166:70:2493:166:5904:-460.427,0,-153.579	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:177:50,127:50:1731:127:4464:-348.651,0,-102.779	0/1:133:36,97:36:1287:97:3435:-269.327,0,-76.0958	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	0/1:309:86,223:86:3019:223:7843:-612.885,0,-178.924	0/1:106:37,69:37:1294:69:2463:-190.015,0,-84.8478	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:36:8,28:8:284:28:969:-76.6797,0,-15.0663	0/1:195:43,152:43:1544:152:5392:-426.712,0,-80.5522	0/1:234:86,148:86:3039:148:5203:-397.971,0,-203.298	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:319:78,241:78:2769:241:8542:-672.757,0,-153.366	0/1:237:82,155:82:2915:155:5534:-426.841,0,-191.242	0/1:103:37,66:37:1332:66:2321:-178.144,0,-89.1763	0/1:119:41,77:41:1440:77:2715:-208.71,0,-94.0119	0/1:242:64,178:64:2248:178:6287:-493.077,0,-129.73	0/1:254:73,181:73:2615:181:6411:-500.621,0,-159.135	0/1:70:25,45:25:892:45:1581:-121.506,0,-59.5276	0/1:39:13,26:13:460:26:919:-71.286,0,-29.9952	0/1:94:33,61:33:1148:61:2130:-163.666,0,-75.3263	0/1:43:9,34:9:324:34:1216:-96.8023,0,-16.5616	0/1:283:101,182:101:3570:182:6435:-493.962,0,-236.314	0/1:154:61,93:61:2169:93:3324:-253.017,0,-149.116	0/1:280:59,220:59:2090:220:7806:-618.227,0,-104.022	0/1:219:76,143:76:2713:143:5090:-392.317,0,-178.487	0/1:188:79,109:79:2807:109:3849:-290.013,0,-196.269	0/1:128:35,93:35:1227:93:3315:-260.037,0,-72.2012	0/1:26:9,17:9:324:17:612:-47.5867,0,-21.6791	0/1:124:31,93:31:1112:93:3314:-261.149,0,-63.0636	0/1:145:49,96:49:1739:96:3387:-261.395,0,-113.144	0/1:366:122,244:122:4319:244:8697:-672.546,0,-278.711	0/1:149:69,80:69:2405:80:2828:-209.886,0,-171.849	0/1:135:64,71:64:2265:71:2470:-181.912,0,-163.472	0/1:96:35,61:35:1256:61:2151:-164.959,0,-84.4464	0/1:273:136,137:136:4800:137:4887:-357.801,0,-349.977	0/1:46:25,21:25:875:21:739:-52.985,0,-65.2187	0/1:183:78,105:78:2744:105:3708:-278.835,0,-192.114	0/1:142:55,87:55:1950:87:3072:-233.966,0,-133.028	0/1:72:23,49:23:806:49:1752:-136.29,0,-51.1841	0/1:191:81,110:81:2877:110:3916:-295.139,0,-201.48	0/1:106:44,62:44:1549:62:2206:-166.895,0,-107.791	0/1:197:62,135:62:219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chr08	28386726	.	C	T	2759.43	PASS	AB=0.18643;ABP=2595.91;AC=20;AF=0.106383;AN=188;AO=577;CIGAR=1X;DP=14897;DPB=14897;DPRA=1.2223;EPP=1255.95;EPPR=31072.4;GTI=7;LEN=1;MEANALT=1.03571;MQM=59.8769;MQMR=59.9929;NS=94;NUMALT=1;ODDS=0.733381;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=20648;QR=511376;RO=14312;RPL=0;RPP=1255.95;RPPR=31063.8;RPR=577;RUN=1;SAF=0;SAP=1255.95;SAR=577;SRF=1;SRP=31072.4;SRR=14311;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:124:124,0:124:4411:0:0:0,-37.3277,-397.165	0/0:65:65,0:65:2319:0:0:0,-19.5669,-208.97	0/0:212:211,0:211:7560:0:0:0,-63.5173,-680.079	0/0:380:379,1:379:13537:1:36:0,-110.793,-1214.52	0/0:100:99,0:99:3544:0:0:0,-29.802,-318.868	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:161:161,0:161:5763:0:0:0,-48.4658,-518.785	0/0:196:196,0:196:7023:0:0:0,-59.0019,-632.131	0/0:222:220,2:220:7857:2:68:0,-60.3709,-700.7	0/0:148:148,0:148:5316:0:0:0,-44.5524,-478.572	0/0:129:129,0:129:4607:0:0:0,-38.8329,-414.795	0/0:246:245,0:245:8690:0:0:0,-73.7523,-781.81	0/0:141:141,0:141:5028:0:0:0,-42.4452,-452.669	0/0:102:102,0:102:3599:0:0:0,-30.7051,-324.118	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/0:124:124,0:124:4415:0:0:0,-37.3277,-397.521	0/0:57:57,0:57:2024:0:0:0,-17.1587,-182.433	0/0:52:52,0:52:1844:0:0:0,-15.6536,-166.24	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/0:244:242,1:242:8637:1:36:0,-69.8563,-773.783	0/0:146:146,0:146:5198:0:0:0,-43.9504,-467.961	0/0:168:168,0:168:6024:0:0:0,-50.573,-542.263	0/0:241:241,0:241:8590:0:0:0,-72.5482,-773.095	0/1:128:110,18:110:3943:18:636:-19.0362,0,-316.529	0/0:201:201,0:201:7167:0:0:0,-60.507,-645.09	0/1:406:341,65:341:12219:65:2332:-87.8635,0,-977.333	0/0:386:386,0:386:13800:0:0:0,-116.198,-1241.78	0/1:77:62,15:62:2215:15:540:-25.7572,0,-176.435	0/0:413:413,0:413:14775:0:0:0,-124.325,-1329.48	0/0:218:217,1:217:7796:1:36:0,-62.0263,-698.068	0/1:181:145,36:145:5156:36:1292:-62.0973,0,-409.696	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9198	0/1:21:16,5:16:572:5:180:-10.2304,0,-45.4918	0/0:416:416,0:416:14800:0:0:0,-125.228,-1331.75	0/0:328:328,0:328:11735:0:0:0,-98.7378,-1056.01	0/0:91:90,0:90:3215:0:0:0,-27.0927,-289.213	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:225:195,30:195:6952:30:1076:-29.4211,0,-558.015	0/0:60:57,3:57:2044:3:108:0,-7.98663,-174.157	0/0:290:290,0:290:10395:0:0:0,-87.2987,-935.468	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/0:136:136,0:136:4829:0:0:0,-40.9401,-434.767	0/0:299:299,0:299:10716:0:0:0,-90.008,-964.344	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.059	0/1:222:180,42:180:6460:42:1508:-69.1859,0,-514.655	0/0:167:167,0:167:5956:0:0:0,-50.272,-536.15	0/0:134:134,0:134:4816:0:0:0,-40.338,-433.593	0/0:234:234,0:234:8383:0:0:0,-70.441,-754.473	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:176:141,35:141:5039:35:1247:-59.5433,0,-400.675	0/0:133:133,0:133:4744:0:0:0,-40.037,-427.12	0/1:20:18,2:18:648:2:68:-0.437109,0,-52.6313	0/1:309:261,48:261:9316:48:1724:-62.4271,0,-745.389	0/0:107:107,0:107:3831:0:0:0,-32.2102,-344.986	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:192:191,0:191:6839:0:0:0,-57.4967,-615.339	0/0:233:233,0:233:8344:0:0:0,-70.14,-750.966	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:320:319,1:319:11376:1:36:0,-92.7313,-1019.96	0/0:238:237,1:237:8487:1:36:0,-68.0469,-760.231	0/1:101:82,19:82:2924:19:680:-31.1251,0,-232.992	0/0:119:119,0:119:4233:0:0:0,-35.8226,-381.151	0/0:240:239,0:239:8556:0:0:0,-71.9462,-769.795	0/0:249:249,0:249:8940:0:0:0,-74.9565,-804.578	0/0:69:69,0:69:2444:0:0:0,-20.7711,-220.214	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/1:44:40,4:40:1428:4:144:-0.0682978,0,-115.572	0/0:287:287,0:287:10220:0:0:0,-86.3956,-919.108	0/1:154:118,36:118:4209:36:1296:-70.5853,0,-332.632	0/0:276:275,0:275:9848:0:0:0,-82.7832,-885.963	0/0:219:219,0:219:7860:0:0:0,-65.9256,-707.424	0/1:192:146,46:146:5220:46:1639:-89.9991,0,-412.141	0/0:127:127,0:127:4564:0:0:0,-38.2308,-410.924	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.725	0/1:149:123,26:123:4387:26:936:-39.706,0,-350.151	0/0:369:368,1:368:13156:1:36:0,-107.482,-1180.24	0/0:145:145,0:145:5187:0:0:0,-43.6493,-466.84	0/0:135:135,0:135:4832:0:0:0,-40.639,-435.035	0/0:98:98,0:98:3480:0:0:0,-29.5009,-313.414	0/0:275:275,0:275:9749:0:0:0,-82.7832,-877.368	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/1:185:151,34:151:5392:34:1220:-54.4163,0,-429.722	0/1:141:117,24:117:4162:24:853:-34.6442,0,-332.319	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.89	0/1:191:144,47:144:5148:47:1665:-92.6311,0,-405.965	0/1:108:76,32:76:2715:32:1148:-71.1186,0,-212.082	0/0:197:197,0:197:7027:0:0:0,-59.3029,-632.495	0/0:263:263,0:263:9417:0:0:0,-79.1709,-847.489
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chr08	28656243	.	G	A	7145.92	PASS	AB=0.400169;ABP=105.33;AC=22;AF=0.11828;AN=186;AO=482;CIGAR=1X;DP=6833;DPB=6833;DPRA=1.0047;EPP=998.193;EPPR=20.1741;GTI=4;LEN=1;MEANALT=1.03571;MQM=59.9066;MQMR=59.9972;NS=93;NUMALT=1;ODDS=0.474282;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=17253;QR=224225;RO=6348;RPL=478;RPP=1015.2;RPPR=13528.2;RPR=4;RUN=1;SAF=2;SAP=1032.36;SAR=480;SRF=3256;SRP=12.2107;SRR=3092;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1085:0:0:0,-9.33193,-97.957	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.861	0/0:77:76,1:76:2708:1:36:0,-19.581,-240.366	0/0:87:87,0:87:3055:0:0:0,-26.1896,-275.178	0/0:35:35,0:35:1218:0:0:0,-10.536,-109.919	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:66:66,0:66:2337:0:0:0,-19.868,-210.589	0/0:51:51,0:51:1777:0:0:0,-15.3525,-160.211	0/0:63:63,0:63:2238:0:0:0,-18.9649,-201.683	0/0:57:57,0:57:1997:0:0:0,-17.1587,-180	0/0:98:98,0:98:3491:0:0:0,-29.5009,-314.402	0/0:170:170,0:170:5967:0:0:0,-51.1751,-537.143	0/0:155:155,0:155:5469:0:0:0,-46.6596,-492.34	0/0:117:117,0:117:4098:0:0:0,-35.2205,-369.008	0/0:113:113,0:113:3964:0:0:0,-34.0164,-356.954	0/0:107:107,0:107:3778:0:0:0,-32.2102,-340.22	0/0:85:85,0:85:2983:0:0:0,-25.5875,-268.703	0/0:93:92,1:92:3251:1:36:0,-24.3975,-289.213	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.443	0/0:105:105,0:105:3739:0:0:0,-31.6081,-336.712	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:44:44,0:44:1552:0:0:0,-13.2453,-139.969	0/1:42:27,15:27:947:15:536:-35.9316,0,-72.9005	0/0:45:45,0:45:1588:0:0:0,-13.5463,-143.208	0/1:109:42,67:42:1487:67:2383:-181.913,0,-101.312	0/0:139:139,0:139:4922:0:0:0,-41.8432,-443.13	0/1:36:27,9:27:951:9:324:-18.6688,0,-75.0672	0/0:126:126,0:126:4441:0:0:0,-37.9298,-399.864	0/1:48:43,5:43:1540:5:180:-2.10263,0,-124.444	0/1:65:23,42:23:792:42:1502:-115.906,0,-52.0272	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	.:.:.:.:.:.:.:.	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:315:315,0:315:11068:0:0:0,-94.8244,-996.029	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:98:98,0:98:3499:0:0:0,-29.5009,-315.121	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:77:43,34:43:1548:34:1216:-86.5673,0,-116.434	0/1:44:38,6:38:1355:6:216:-6.54519,0,-109.004	0/0:89:89,0:89:3155:0:0:0,-26.7917,-284.174	0/0:143:143,0:143:5045:0:0:0,-43.0473,-454.197	0/0:118:118,0:118:4157:0:0:0,-35.5215,-374.315	0/0:72:72,0:72:2551:0:0:0,-21.6742,-229.841	0/0:50:50,0:50:1783:0:0:0,-15.0515,-160.752	0/1:72:27,44:27:932:44:1572:-119.994,0,-62.4571	0/0:50:50,0:50:1756:0:0:0,-15.0515,-158.321	0/0:72:72,0:72:2500:0:0:0,-21.6742,-225.251	0/0:84:83,0:83:2954:0:0:0,-24.9855,-265.678	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:83:40,43:40:1440:43:1544:-114.268,0,-104.912	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:64:35,29:35:1228:29:1036:-74.288,0,-91.5552	0/0:35:35,0:35:1235:0:0:0,-10.536,-111.453	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/0:193:190,3:190:6664:3:108:0,-48.0236,-589.77	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.842	0/0:88:88,0:88:3139:0:0:0,-26.4906,-282.736	0/1:25:22,3:22:784:3:108:-2.54942,0,-63.3582	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.123	0/0:59:59,0:59:2091:0:0:0,-17.7608,-188.46	0/0:55:55,0:55:1919:0:0:0,-16.5566,-172.984	0/0:65:65,0:65:2294:0:0:0,-19.5669,-206.719	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.044	0/0:152:152,0:152:5359:0:0:0,-45.7566,-482.447	0/1:14:3,11:3:104:11:396:-31.7683,0,-5.48839	0/0:33:33,0:33:1170:0:0:0,-9.93399,-105.606	0/1:61:31,30:31:1108:30:1072:-78.4296,0,-81.6682	0/0:87:87,0:87:3072:0:0:0,-26.1896,-276.709	0/0:67:67,0:67:2353:0:0:0,-20.169,-212.026	0/1:37:25,12:25:882:12:432:-28.0831,0,-68.5584	0/0:59:58,1:58:2057:1:36:0,-14.1625,-181.801	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/1:63:40,23:40:1406:23:824:-55.5184,0,-107.871	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.286	0/0:115:115,0:115:4036:0:0:0,-34.6184,-363.431	0/0:142:142,0:142:4998:0:0:0,-42.7463,-449.974	0/0:130:129,0:129:4539:0:0:0,-38.8329,-408.322	0/0:228:227,1:227:7977:1:36:0,-65.3358,-714.665	0/0:59:59,0:59:2087:0:0:0,-17.7608,-188.1	0/1:82:58,24:58:2011:24:860:-53.0374,0,-156.577	0/1:74:55,19:55:1903:19:684:-39.6141,0,-149.269	0/0:82:82,0:82:2890:0:0:0,-24.6845,-260.335	0/1:104:77,27:77:2742:27:968:-56.1302,0,-215.715	0/1:67:47,20:47:1680:20:716:-44.5987,0,-131.318	0/0:61:61,0:61:2162:0:0:0,-18.3628,-194.846	0/0:232:230,2:230:8134:2:72:0,-63.0022,-725.247
chr08	28906750	.	T	C	693608	PASS	AB=0.561845;ABP=120.385;AC=171;AF=0.909574;AN=188;AO=30604;CIGAR=1X;DP=32248;DPB=32248;DPRA=0;EPP=66458.8;EPPR=3542.51;GTI=1;LEN=1;MEANALT=1.12766;MQM=59.9616;MQMR=59.9945;NS=94;NUMALT=1;ODDS=47.1742;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=1094006;QR=57693;RO=1630;RPL=30604;RPP=66458.8;RPPR=3542.51;RPR=0;RUN=1;SAF=0;SAP=66458.8;SAR=30604;SRF=0;SRP=3542.51;SRR=1630;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:349:0,349:0:0:349:12494:-1124.29,-105.059,0	1/1:216:0,216:0:0:216:7704:-693.394,-65.0225,0	1/1:289:1,287:1:36:287:10250:-918.828,-83.4582,0	1/1:107:0,107:0:0:107:3829:-344.79,-32.2102,0	1/1:35:0,35:0:0:35:1252:-112.982,-10.5361,0	1/1:187:1,186:1:36:186:6584:-589.041,-52.6943,0	1/1:377:0,377:0:0:377:13447:-1210.02,-113.488,0	1/1:119:0,119:0:0:119:4230:-380.88,-35.8226,0	1/1:184:1,183:1:36:183:6561:-586.97,-51.7912,0	1/1:408:1,407:1:36:407:14569:-1307.35,-119.222,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	1/1:76:0,76:0:0:76:2709:-243.863,-22.8783,0	1/1:78:0,78:0:0:78:2784:-250.801,-23.4803,0	1/1:31:0,31:0:0:31:1103:-99.579,-9.33193,0	1/1:54:0,54:0:0:54:1918:-172.894,-16.2556,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:217:0,217:0:0:217:7799:-701.932,-65.3235,0	1/1:229:0,229:0:0:229:8179:-736.12,-68.9359,0	1/1:261:0,261:0:0:261:9334:-839.967,-78.5688,0	1/1:188:0,187:0:0:187:6693:-602.084,-56.2926,0	1/1:75:0,75:0:0:75:2696:-242.881,-22.5773,0	0/1:206:99,107:99:3526:107:3814:-281.443,0,-255.535	1/1:89:0,89:0:0:89:3172:-285.704,-26.7917,0	0/1:617:261,356:261:9229:356:12670:-954.281,0,-644.85	1/1:397:0,397:0:0:397:14184:-1276.32,-119.509,0	0/1:37:27,10:27:945:10:360:-21.6062,0,-74.2241	1/1:475:1,474:1:36:474:16966:-1522.98,-139.391,0	1/1:368:8,360:8:288:360:12920:-1136.34,-84.5116,0	0/1:217:103,114:103:3685:114:4062:-300.439,0,-266.525	1/1:900:6,894:6:208:894:32006:-2860.45,-251.868,0	1/1:1312:1,1310:1:32:1310:46841:-4209.99,-391.791,0	1/1:745:12,733:12:432:733:26241:-2320.5,-185.046,0	1/1:2577:2,2574:2:72:2574:91851:-8255.94,-768.976,0	1/1:516:8,507:8:273:507:18142:-1607.19,-130.488,0	1/1:133:0,133:0:0:133:4772:-429.636,-40.037,0	1/1:383:2,381:2:72:381:13547:-1212.17,-108.458,0	1/1:470:2,468:2:68:468:16745:-1500.25,-135.026,0	1/1:822:1,821:1:36:821:29364:-2638.27,-243.848,0	0/1:256:121,135:121:4210:135:4815:-356.436,0,-302.016	0/1:87:13,74:13:453:74:2648:-212.377,0,-14.91	1/1:271:0,271:0:0:271:9710:-873.845,-81.5791,0	1/1:46:0,46:0:0:46:1622:-146.265,-13.8474,0	1/1:37:0,37:0:0:37:1324:-119.46,-11.1381,0	1/1:129:0,129:0:0:129:4617:-415.692,-38.8329,0	1/1:190:0,189:0:0:189:6775:-609.44,-56.8947,0	0/1:334:178,156:178:6273:156:5592:-402.858,0,-464.123	1/1:401:0,401:0:0:401:14358:-1291.97,-120.713,0	1/1:485:0,484:0:0:484:17320:-1558.06,-145.699,0	1/1:209:0,209:0:0:209:7466:-671.981,-62.9153,0	1/1:2840:1,2837:1:36:2837:101345:-9113.33,-851.085,0	0/1:256:115,141:115:4050:141:5020:-374.882,0,-287.627	1/1:160:0,160:0:0:160:5711:-514.108,-48.1648,0	1/1:728:9,718:9:324:718:25651:-2277.54,-189.703,0	0/1:183:67,116:67:2340:116:4134:-317.154,0,-155.765	1/1:65:0,65:0:0:65:2320:-209.058,-19.567,0	1/1:1896:0,1895:0:0:1895:67729:-6091.96,-570.452,0	1/1:1290:0,1290:0:0:1290:46042:-4142.17,-388.329,0	1/1:65:0,65:0:0:65:2332:-210.137,-19.567,0	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	1/1:893:0,893:0:0:893:31911:-2871,-268.82,0	1/1:107:0,107:0:0:107:3825:-344.446,-32.2102,0	1/1:408:7,401:7:248:401:14306:-1264.63,-100.156,0	0/1:145:43,102:43:1510:102:3614:-281.794,0,-92.5398	1/1:214:0,214:0:0:214:7637:-687.364,-64.4204,0	1/1:242:1,241:1:36:241:8604:-770.756,-69.251,0	1/1:83:1,82:1:36:82:2937:-260.964,-21.3872,0	1/1:308:0,308:0:0:308:11043:-993.758,-92.7172,0	1/1:133:0,133:0:0:133:4774:-429.815,-40.037,0	1/1:54:0,54:0:0:54:1944:-175.234,-16.2556,0	1/1:562:13,549:13:453:549:19650:-1726.93,-128.079,0	1/1:110:0,110:0:0:110:3948:-355.502,-33.1133,0	0/1:119:55,64:55:1972:64:2288:-170.337,0,-141.932	1/1:241:1,240:1:36:240:8584:-768.957,-68.95,0	1/1:230:0,230:0:0:230:8263:-743.676,-69.2369,0	0/1:207:111,96:111:3965:96:3424:-246.062,0,-294.727	1/1:218:1,216:1:36:216:7708:-690.227,-62.0101,0	1/1:1576:0,1574:0:0:1574:56377:-5070.31,-473.821,0	1/1:225:0,225:0:0:225:8057:-725.142,-67.7318,0	0/1:217:127,90:127:4488:90:3206:-223.439,0,-338.764	1/1:430:0,430:0:0:430:15358:-1381.88,-129.443,0	1/1:79:0,79:0:0:79:2832:-255.114,-23.7814,0	1/1:59:0,59:0:0:59:2115:-190.619,-17.7608,0	1/1:70:0,70:0:0:70:2496:-224.893,-21.0721,0	1/1:100:0,100:0:0:100:3572:-321.688,-30.103,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:73:47,26:47:1684:26:932:-62.2237,0,-129.872	0/1:77:43,34:43:1544:34:1220:-86.9275,0,-116.074	1/1:482:0,482:0:0:482:17307:-1557.25,-145.096,0	0/1:424:78,346:78:2777:346:12376:-985.974,0,-122.533	0/1:78:60,18:60:2140:18:648:-35.1715,0,-169.388	1/1:10:0,10:0:0:10:349:-31.7447,-3.0103,0	1/1:66:1,65:1:36:65:2314:-204.921,-16.2697,0
chr08	28925716	.	TTAT	TTAC,CTAC	178415	PASS	AB=0.511061,0.487238;ABP=4.8837,5.50448;AC=167,21;AF=0.888298,0.111702;AN=188;AO=7064,873;CIGAR=3M1X,1X2M1X;DP=7968;DPB=7968;DPRA=0,1.19859;EPP=15203.6,1898.71;EPPR=22.5536;GTI=0;LEN=1,4;MEANALT=1.53191,2.25806;MQM=59.9639,59.5223;MQMR=57.6667;NS=94;NUMALT=2;ODDS=0.776077;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=252727,30869;QR=317;RO=9;RPL=16,0;RPP=15203.6,1898.71;RPPR=22.5536;RPR=7048,873;RUN=1,1;SAF=7064,873;SAP=15342.3,1898.71;SAR=0,0;SRF=9;SRP=22.5536;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25,0:0:0:25,0:888,0:-80.2387,-7.52575,0,-80.2387,-7.52575,-80.2387	1/1:80:0,80,0:0:0:80,0:2872,0:-258.716,-24.0824,0,-258.716,-24.0824,-258.716	1/1:116:0,116,0:0:0:116,0:4168,0:-375.293,-34.9195,0,-375.293,-34.9195,-375.293	1/1:182:0,182,0:0:0:182,0:6528,0:-587.601,-54.7875,0,-587.601,-54.7875,-587.601	1/1:68:0,68,0:0:0:68,0:2440,0:-219.855,-20.47,0,-219.855,-20.47,-219.855	1/1:93:1,92,0:1:36:92,0:3291,0:-292.809,-24.3975,0,-293.11,-27.6948,-296.047	1/1:121:0,121,0:0:0:121,0:4340,0:-390.774,-36.4246,0,-390.774,-36.4246,-390.774	1/1:116:0,115,0:0:0:115,0:4088,0:-367.895,-34.6185,0,-367.895,-34.6185,-367.895	1/1:97:0,95,0:0:0:95,0:3412,0:-306.997,-28.5979,0,-306.997,-28.5979,-306.997	1/1:102:1,99,1:1:36:99,1:3552,36:-316.338,-26.8396,0,-313.702,-26.8396,-316.338	1/1:77:0,77,0:0:0:77,0:2755,0:-248.191,-23.1793,0,-248.191,-23.1793,-248.191	1/1:62:0,62,0:0:0:62,0:2228,0:-200.784,-18.6639,0,-200.784,-18.6639,-200.784	1/1:52:1,51,0:1:36:51,0:1808,0:-159.401,-12.0553,0,-159.702,-15.3525,-162.639	1/1:66:0,65,0:0:0:65,0:2332,0:-209.783,-19.567,0,-209.783,-19.567,-209.783	1/1:46:0,46,0:0:0:46,0:1644,0:-148.249,-13.8474,0,-148.249,-13.8474,-148.249	1/1:45:0,45,0:0:0:45,0:1599,0:-144.199,-13.5464,0,-144.199,-13.5464,-144.199	1/1:69:0,69,0:0:0:69,0:2460,0:-221.653,-20.7711,0,-221.653,-20.7711,-221.653	1/1:34:1,33,0:1:36:33,0:1169,0:-101.917,-6.63675,0,-102.218,-9.93399,-105.156	1/1:35:0,35,0:0:0:35,0:1252,0:-112.985,-10.5361,0,-112.985,-10.5361,-112.985	1/1:157:0,156,0:0:0:156,0:5587,0:-502.592,-46.9607,0,-502.592,-46.9607,-502.592	1/1:136:0,136,0:0:0:136,0:4851,0:-436.745,-40.9401,0,-436.745,-40.9401,-436.745	1/1:68:0,66,2:0:0:66,2:2363,72:-212.568,-19.868,0,-206.693,-13.6333,-206.091	1/1:23:0,23,0:0:0:23,0:807,0:-72.9459,-6.92369,0,-72.9459,-6.92369,-72.9459	1/2:35:0,23,12:0:0:23,12:824,432:-102.809,-35.6088,-28.6851,-67.5596,0,-63.9473	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/2:284:0,162,121:0:0:162,121:5778,4258:-817.561,-346.653,-297.886,-470.962,0,-434.537	1/1:164:0,162,1:0:0:162,1:5800,36:-521.749,-48.7669,0,-518.812,-45.8294,-518.511	1/2:32:0,14,18:0:0:14,18:504,633:-93.0046,-51.8771,-47.6627,-41.4837,0,-36.0651	1/1:174:0,173,0:0:0:173,0:6204,0:-558.188,-52.0782,0,-558.188,-52.0782,-558.188	1/1:144:0,141,3:0:0:141,3:5054,107:-454.648,-42.4452,0,-445.925,-33.3662,-445.022	1/2:238:0,118,120:0:0:118,120:4223,4256:-691.446,-347.074,-311.553,-344.728,0,-308.604	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:3:0,3,0:0:0:3,0:104,0:-9.70264,-0.90309,0,-9.70264,-0.90309,-9.70264	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/1:154:0,153,0:0:0:153,0:5476,0:-492.605,-46.0576,0,-492.605,-46.0576,-492.605	1/1:193:0,192,1:0:0:192,1:6870,34:-618.028,-57.7978,0,-615.27,-54.6999,-614.969	1/1:77:0,77,0:0:0:77,0:2763,0:-248.911,-23.1793,0,-248.911,-23.1793,-248.911	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:103:0,53,50:0:0:53,50:1896,1739:-296.324,-141.713,-125.758,-154.963,0,-139.912	1/2:37:0,19,18:0:0:19,18:684,647:-108.95,-53.1385,-47.4189,-56.1708,0,-50.7522	1/1:103:0,103,0:0:0:103,0:3692,0:-332.478,-31.0061,0,-332.478,-31.0061,-332.478	1/1:42:0,42,0:0:0:42,0:1512,0:-136.375,-12.6433,0,-136.375,-12.6433,-136.375	1/1:50:0,50,0:0:0:50,0:1792,0:-161.562,-15.0515,0,-161.562,-15.0515,-161.562	1/1:76:0,76,0:0:0:76,0:2710,0:-244.144,-22.8783,0,-244.144,-22.8783,-244.144	1/1:115:0,114,0:0:0:114,0:4080,0:-367.122,-34.3174,0,-367.122,-34.3174,-367.122	1/2:128:0,67,61:0:0:67,61:2408,2163:-373.008,-176.559,-156.39,-196.805,0,-178.442	1/1:108:0,108,0:0:0:108,0:3857,0:-347.27,-32.5112,0,-347.27,-32.5112,-347.27	1/1:112:0,112,0:0:0:112,0:3993,0:-359.557,-33.7154,0,-359.557,-33.7154,-359.557	1/1:178:1,177,0:1:36:177,0:6340,0:-567.092,-49.9851,0,-567.393,-53.2823,-570.331	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:134:0,65,69:0:0:65,69:2328,2449:-389.716,-199.86,-180.293,-190.213,0,-169.442	1/1:70:1,68,0:1:36:68,0:2435,0:-215.89,-17.4468,0,-216.191,-20.47,-219.128	1/2:10:0,8,2:0:0:8,2:284,72:-29.3709,-6.23466,-3.82642,-23.4951,0,-22.8931	1/2:120:0,57,63:0:0:57,63:2039,2213:-346.704,-180.44,-163.281,-166.619,0,-147.654	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	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chr08	29108809	.	G	A	260.194	PASS	AB=0.215969;ABP=4373.41;AC=61;AF=0.324468;AN=188;AO=1624;CIGAR=1X;DP=12265;DPB=12265;DPRA=0.655218;EPP=3529.48;EPPR=23090.1;GTI=52;LEN=1;MEANALT=1.05682;MQM=23.8276;MQMR=42.9269;NS=94;NUMALT=1;ODDS=59.9118;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58182;QR=379558;RO=10636;RPL=0;RPP=3529.48;RPPR=23098.8;RPR=1624;RUN=1;SAF=1624;SAP=3529.48;SAR=0;SRF=10635;SRP=23090.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:33,7:33:1165:7:252:-1.31294,0,-81.8109	0/1:84:57,27:57:2040:27:964:-25.5909,0,-129.649	0/1:119:100,19:100:3564:19:672:-1.06338,0,-226.964	0/0:59:52,7:52:1868:7:252:0,-1.97257,-123.582	0/0:33:32,1:32:1152:1:36:0,-7.65512,-82.5538	0/1:37:29,8:29:1032:8:288:-4.09396,0,-72.3003	0/1:56:43,13:43:1514:13:464:-12.2103,0,-94.8851	0/1:99:80,19:80:2834:19:684:-6.08729,0,-179.978	0/1:73:54,19:54:1924:19:680:-13.8964,0,-135.132	0/1:57:49,8:49:1756:8:284:-0.808012,0,-119.879	0/0:463:421,42:421:14932:42:1508:0,-46.0921,-1147.36	0/1:131:97,34:97:3480:34:1224:-24.6232,0,-237.862	0/1:175:134,41:134:4785:41:1472:-24.5058,0,-312.321	0/1:217:166,51:166:5872:51:1832:-39.4771,0,-316.219	0/1:166:120,45:120:4312:45:1620:-50.2397,0,-243.432	0/1:139:113,26:113:4064:26:932:-11.6829,0,-250.546	0/1:112:78,34:78:2792:34:1220:-30.3252,0,-158.405	0/1:63:47,16:47:1692:16:568:-11.2552,0,-101.079	0/0:227:212,15:212:7568:15:540:0,-39.9563,-629.302	0/1:80:67,13:67:2408:13:468:-4.68572,0,-150.287	0/1:82:63,19:63:2245:19:676:-14.4575,0,-140.563	0/1:38:32,6:32:1152:6:216:-3.12816,0,-71.4563	0/1:46:38,8:38:1341:8:288:-4.16103,0,-96.6946	0/1:52:43,9:43:1548:9:324:-3.03314,0,-86.6751	0/1:46:39,7:39:1396:7:248:-0.709822,0,-94.6399	0/1:162:134,28:134:4789:28:992:-17.998,0,-309.135	0/0:75:66,9:66:2357:9:324:0,-3.89055,-141.55	0/0:48:42,6:42:1508:6:216:0,-1.91568,-96.6793	0/1:159:133,26:133:4765:26:932:-14.1529,0,-268.413	0/1:67:57,10:57:2025:10:352:-0.51385,0,-134.02	0/1:63:51,12:51:1824:12:428:-7.72622,0,-110.418	0/0:101:98,2:98:3478:2:72:0,-25.9888,-301.298	0/0:186:184,2:184:6566:2:72:0,-51.8444,-579.346	0/0:141:138,3:138:4905:3:108:0,-36.6028,-426.409	0/0:361:361,0:361:12872:0:0:0,-108.672,-1145.82	0/0:137:136,1:136:4799:1:36:0,-39.1545,-422.867	0/1:410:333,77:333:11869:77:2760:-59.3862,0,-681.929	0/1:25:21,4:21:748:4:140:-0.878193,0,-47.2197	0/0:365:344,21:344:12280:21:752:0,-70.2485,-1031.31	0/0:128:128,0:128:4570:0:0:0,-38.5318,-407.395	0/1:138:112,26:112:3993:26:936:-12.0112,0,-248.39	0/0:155:143,12:143:5117:12:428:0,-21.8474,-371.474	0/0:98:84,14:84:2993:14:504:0,-0.559347,-186.409	0/1:76:61,15:61:2192:15:540:-10.5011,0,-136.315	0/1:118:95,23:95:3370:23:824:-15.7488,0,-203.631	0/0:45:40,5:40:1428:5:176:0,-1.42509,-100.542	0/1:68:51,17:51:1820:17:612:-14.0205,0,-113.458	0/1:109:92,17:92:3292:17:608:-5.13669,0,-182.618	0/1:44:38,6:38:1364:6:216:-0.322661,0,-95.3636	0/0:110:96,13:96:3421:13:456:0,-4.16999,-220.381	0/1:72:53,18:53:1873:18:648:-21.4501,0,-133.081	0/0:205:205,0:205:7317:0:0:0,-61.7111,-654.256	0/0:72:61,11:61:2180:11:396:0,-0.808311,-157.811	0/1:37:28,9:28:992:9:316:-10.457,0,-68.5911	0/0:51:51,0:51:1828:0:0:0,-15.3525,-162.577	0/1:118:88,30:88:3145:30:1076:-26.2085,0,-181.8	0/1:22:19,3:19:672:3:108:-0.284676,0,-48.7996	0/0:166:166,0:166:5911:0:0:0,-49.971,-529.531	0/0:148:147,1:147:5257:1:36:0,-41.9038,-462.229	0/1:38:31,7:31:1112:7:248:-2.94226,0,-77.4793	0/1:187:144,43:144:5164:43:1544:-39.2124,0,-295.678	0/0:160:158,2:158:5641:2:72:0,-42.4937,-498.389	0/1:24:21,3:21:741:3:108:-0.19136,0,-43.9103	0/1:137:103,34:103:3689:34:1224:-34.4929,0,-211.053	0/0:51:45,6:45:1559:6:216:0,-2.81877,-99.3683	0/1:60:50,10:50:1754:10:345:-3.92161,0,-110.987	0/0:60:59,1:59:2101:1:36:0,-15.5949,-152.387	0/1:127:90,37:90:3232:37:1332:-45.0154,0,-192.17	0/0:563:544,19:544:19462:19:684:0,-129.393,-1659.99	0/1:40:32,8:32:1148:8:284:-4.36023,0,-79.6384	0/1:86:66,20:66:2368:20:701:-21.2414,0,-134.817	0/0:115:112,3:112:3982:3:108:0,-27.7111,-340.831	0/1:43:33,10:33:1173:10:360:-6.04363,0,-73.0787	0/1:92:60,32:60:2129:32:1152:-33.7825,0,-123.255	0/1:207:167,40:167:5928:40:1436:-19.7531,0,-348.151	0/1:152:124,28:124:4448:28:1008:-16.6562,0,-256.333	0/0:48:41,7:41:1468:7:252:0,-1.0953,-100.918	0/1:98:82,16:82:2932:16:572:-0.736846,0,-184.604	0/0:245:245,0:245:8731:0:0:0,-73.7523,-780.458	0/1:73:58,15:58:2073:15:540:-9.01738,0,-123.968	0/1:55:43,12:43:1521:12:432:-6.18713,0,-101.774	0/1:194:159,35:159:5667:35:1252:-19.4719,0,-344.759	0/1:110:87,23:87:3097:23:828:-18.1983,0,-176.188	0/1:201:159,42:159:5696:42:1504:-32.9062,0,-356.791	0/1:134:110,24:110:3956:24:856:-13.5053,0,-227.446	0/0:216:187,29:187:6662:29:1044:0,-0.389554,-434.074	0/1:27:17,10:17:608:10:352:-10.8246,0,-40.672	0/1:73:53,20:53:1904:20:712:-15.7567,0,-126.981	0/1:116:91,24:91:3256:24:860:-10.4341,0,-216.824	0/0:478:469,9:469:16761:9:324:0,-125.206,-1438.42	0/0:590:565,25:565:20182:25:900:0,-126.279,-1652.39	0/0:128:117,11:117:4192:11:392:0,-13.9043,-301.457	0/1:90:66,24:66:2364:24:860:-26.3978,0,-113.84	0/1:273:193,80:193:6901:80:2868:-95.2343,0,-386.711
chr08	29108822	.	GGACGT	GGATGT,GGATGC	638078	PASS	AB=0.695091,0.185101;ABP=9268.73,24143.7;AC=120,68;AF=0.638298,0.361702;AN=188;AO=25584,5576;CIGAR=3M1X2M,3M1X1M1X;DP=34858;DPB=34956.3;DPRA=0,2.13106;EPP=5032.71,1932.68;EPPR=3.13803;GTI=10;LEN=1,6;MEANALT=4.15957,4.1828;MQM=38.3917,36.4656;MQMR=40;NS=94;NUMALT=2;ODDS=8930.84;PAIRED=0,0;PAIREDR=0;PAO=142.25,21;PQA=4904.5,732;PQR=4904.5;PRO=142.25;QA=805825,193189;QR=576;RO=17;RPL=29,0;RPP=55306.4,12111.1;RPPR=39.9253;RPR=25555,5576;RUN=1,1;SAF=8972,1675;SAP=4957.2,1932.68;SAR=16612,3901;SRF=8;SRP=3.13803;SRR=9;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:165:0,126,32:0:0:126,32:3963,1108:-383.516,-85.6724,-47.7426,-297.913,0,-288.28	1/2:242:0,178,36:0:0:178,36:5502,1223:-504.793,-92.8945,-39.3112,-411.961,0,-401.124	1/2:584:1,441,124:1:35:441,124:13338,4250:-1303.22,-326.82,-196.596,-974.197,0,-939.4	1/1:356:0,277,32:0:0:277,32:8630,1131:-731.984,-83.3853,0,-654.968,-6.37657,-645.335	1/1:142:0,121,17:0:0:121,17:3757,599:-315.579,-36.4246,0,-279.622,-0.530934,-274.505	1/1:122:0,105,6:0:0:105,6:3289,200:-280.047,-31.6082,0,-265.045,-16.576,-263.239	1/2:261:0,175,43:0:0:175,43:5466,1501:-510.151,-100.048,-47.3681,-410.098,0,-397.154	1/2:357:0,296,42:0:0:296,42:9007,1450:-774.453,-110.758,-21.653,-663.744,0,-651.101	1/2:261:0,216,26:0:0:216,26:6804,914:-581.989,-70.1504,-5.12788,-511.898,0,-504.072	1/2:240:0,145,68:0:0:145,68:4587,2372:-523.356,-176.07,-132.421,-347.285,0,-326.815	1/2:984:1,715,147:1:31:715,147:23431,5084:-2154.09,-338.915,-125.849,-1813.31,0,-1771.23	1/2:480:0,370,73:0:0:370,73:11815,2501:-1081.22,-186.031,-74.6501,-895.242,0,-873.267	1/2:673:1,446,185:1:36:446,185:13462,6434:-1474.32,-486.151,-354.812,-985.625,0,-932.854	1/2:658:0,439,136:0:0:439,136:12833,4728:-1238.74,-305.955,-173.803,-932.794,0,-891.854	1/2:656:0,378,140:0:0:378,140:11596,4872:-1192.48,-333.683,-219.894,-858.796,0,-816.652	1/2:364:1,248,71:1:34:248,71:7649,2456:-723.811,-149.932,-78.0352,-571.429,0,-552.814	1/2:446:0,344,67:0:0:344,67:10339,2289:-929.335,-169.462,-65.9073,-759.927,0,-739.758	1/2:246:0,197,33:0:0:197,33:5901,1160:-518.892,-87.1764,-27.8735,-431.782,0,-421.848	1/2:338:0,273,50:0:0:273,50:9217,1746:-855.265,-131.978,-49.7964,-723.367,0,-708.315	1/2:356:0,245,38:0:0:245,38:7697,1329:-668.436,-85.6782,-11.9259,-582.746,0,-571.307	1/2:314:0,232,47:0:0:232,47:7161,1645:-643.54,-111.311,-41.4718,-532.24,0,-518.092	1/1:174:0,165,3:0:0:165,3:5018,108:-420.806,-49.67,0,-415.049,-43.924,-414.146	1/2:241:0,180,25:0:0:180,25:5807,854:-503.245,-60.107,-5.92156,-443.129,0,-435.604	1/2:285:0,212,48:0:0:212,48:6347,1647:-575.906,-113.125,-49.3067,-462.773,0,-448.323	1/2:172:0,135,21:0:0:135,21:4273,700:-368.964,-48.0235,-7.38441,-320.94,0,-314.619	1/2:438:0,349,58:0:0:349,58:10450,2046:-908.384,-138.595,-33.5357,-769.814,0,-752.354	1/2:311:0,244,50:0:0:244,50:7327,1691:-651.125,-111.573,-38.1214,-539.551,0,-524.5	1/2:172:1,120,35:1:34:120,35:3678,1194:-353.486,-78.9848,-45.6149,-272.044,0,-264.261	1/1:585:1,515,39:1:33:515,39:15716,1376:-1312.06,-153.551,0,-1234.8,-77.4612,-1224.54	1/2:182:1,142,25:1:32:142,25:4327,883:-378.076,-56.3751,-15.3503,-320.303,0,-314.5	1/2:350:0,233,55:0:0:233,55:7313,1882:-672.718,-125.158,-55.0177,-547.544,0,-530.987	1/1:128:0,114,9:0:0:114,9:3937,322:-349.179,-34.3174,0,-328.982,-14.1165,-326.273	1/1:218:0,200,12:0:0:200,12:7062,414:-627.414,-60.206,0,-597.719,-30.496,-594.107	1/1:161:0,154,3:0:0:154,3:5386,106:-476.496,-46.3586,0,-468.411,-38.219,-467.508	1/1:391:0,387,1:0:0:387,1:13618,33:-1213.45,-116.499,0,-1210.8,-113.842,-1210.5	1/1:161:0,156,4:0:0:156,4:5449,132:-482.494,-46.9607,0,-472.371,-36.8089,-471.167	1/1:1243:1,1033,121:1:36:1033,121:31627,4262:-2648.74,-308.032,0,-2415.96,-77.8847,-2382.47	1/1:100:0,88,2:0:0:88,2:2674,68:-224.134,-26.4906,0,-218.669,-21.0197,-218.067	1/2:573:1,459,90:1:36:459,90:15466,3141:-1448.5,-235.185,-99.9499,-1210.77,0,-1186.61	1/1:145:3,140,1:3:95:140,1:4931,36:-431.415,-34.7209,0,-429.425,-39.2357,-436.522	1/2:745:0,509,155:0:0:509,155:15266,5387:-1500.22,-384.283,-231.058,-1115.93,0,-1069.27	1/2:360:0,256,72:0:0:256,72:7813,2479:-757.073,-173.207,-96.1433,-583.881,0,-562.207	1/2:372:0,305,45:0:0:305,45:9432,1507:-803.213,-95.8676,-4.05349,-707.358,0,-693.812	1/2:322:0,200,72:0:0:200,72:6346,2495:-649.045,-171.594,-111.388,-477.45,0,-455.776	1/2:526:1,314,112:1:32:314,112:9646,3836:-977.145,-259.568,-166.922,-715.989,0,-684.152	1/1:157:0,144,6:0:0:144,6:4444,201:-376.147,-43.3483,0,-364.258,-31.4622,-362.452	1/2:257:0,205,37:0:0:205,37:6430,1242:-572.51,-93.5613,-31.8501,-479.001,0,-467.862	1/2:548:0,388,88:0:0:388,88:11795,3058:-1071.88,-198.403,-81.6038,-873.453,0,-846.963	1/2:151:0,107,21:0:0:107,21:3364,706:-302.092,-47.5063,-15.2961,-254.581,0,-248.259	1/2:347:0,213,93:0:0:213,93:6688,3235:-741.119,-238.243,-174.124,-502.881,0,-474.885	1/1:235:0,208,7:0:0:208,7:6748,231:-577.132,-62.6142,0,-562.363,-47.8399,-560.256	1/1:224:0,217,5:0:0:217,5:7709,168:-689.604,-65.3235,0,-677.722,-53.4755,-676.217	1/2:198:0,139,48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chr08	29108830	.	T	A	8.47065e-12	PASS	AB=0.161066;ABP=16512.6;AC=40;AF=0.212766;AN=188;AO=4993;CIGAR=1X;DP=40644;DPB=40644;DPRA=0;EPP=10793.1;EPPR=3087.38;GTI=39;LEN=1;MEANALT=1.15957;MQM=24.273;MQMR=42.4132;NS=94;NUMALT=1;ODDS=84.1922;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177417;QR=1273190;RO=35630;RPL=0;RPP=10845.2;RPPR=76092.4;RPR=4993;RUN=1;SAF=6;SAP=10793.1;SAR=4987;SRF=14406;SRP=2836.05;SRR=21224;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:209:175,34:175:6242:34:1216:-9.88496,0,-457.292	0/0:336:300,35:300:10717:35:1243:0,-26.2808,-791.82	0/1:793:663,130:663:23600:130:4643:-39.6643,0,-1701.43	0/1:385:311,74:311:11098:74:2651:-48.19,0,-804.008	0/1:164:133,31:133:4776:31:1108:-14.635,0,-334.738	0/1:141:115,26:115:4116:26:919:-13.2979,0,-289.659	0/1:284:232,52:232:8296:52:1846:-29.0109,0,-592.295	0/1:488:410,78:410:14639:78:2784:-19.7448,0,-1032.79	0/1:329:279,50:279:9960:50:1774:-7.755,0,-712.033	0/0:252:226,25:226:8052:25:896:0,-20.6993,-609.191	0/0:1038:940,96:940:33648:96:3397:0,-100.924,-2564.06	0/0:631:565,66:565:20162:66:2327:0,-48.5059,-1501.06	0/0:920:800,120:800:28512:120:4252:0,-20.5404,-2049.19	0/0:782:678,104:678:24175:104:3684:0,-22.4031,-1649.53	0/0:746:659,86:659:23612:86:3029:0,-35.7445,-1689.44	0/0:439:393,44:393:14014:44:1554:0,-41.4019,-1015.52	0/1:587:501,86:501:17865:86:3027:-6.2687,0,-1242.95	0/1:335:283,51:283:10109:51:1797:-8.14794,0,-707.771	0/0:387:354,31:354:12678:31:1112:0,-49.8039,-1006.49	0/0:390:338,52:338:12031:52:1849:0,-2.17387,-868.095	0/0:368:323,45:323:11563:45:1598:0,-18.3368,-829.337	0/1:217:184,33:184:6569:33:1160:-7.49793,0,-453.948	0/1:257:221,36:221:7866:36:1272:-2.18081,0,-581.647	0/1:326:272,54:272:9707:54:1927:-12.7413,0,-672.644	0/0:210:183,27:183:6521:27:972:0,-7.61198,-481.669	0/1:642:544,98:544:19387:98:3489:-23.181,0,-1383.21	0/0:350:303,47:303:10818:47:1655:0,-8.61784,-748.647	0/0:197:180,17:180:6415:17:604:0,-24.2629,-476.563	0/1:786:662,124:662:23674:124:4397:-37.489,0,-1649.47	0/1:211:173,38:173:6162:38:1346:-14.568,0,-427.34	0/1:376:320,56:320:11415:56:1996:-11.5767,0,-819.815	0/0:136:127,9:127:4564:9:320:0,-22.1946,-375.672	0/0:224:219,5:219:7847:5:180:0,-56.8608,-677.51	0/0:173:168,5:168:6031:5:176:0,-41.0409,-511.724	0/0:402:393,9:393:14059:9:324:0,-101.551,-1227.61	0/0:172:163,9:163:5856:9:324:0,-32.3142,-493.668	0/0:1842:1626,214:1626:58079:214:7608:0,-80.7981,-4173.38	0/1:119:100,19:100:3558:19:675:-3.51519,0,-255.101	0/0:633:587,46:587:21010:46:1632:0,-92.5902,-1682.26	0/0:145:139,6:139:4973:6:216:0,-30.6964,-430.641	0/1:821:674,147:674:24051:147:5234:-55.7723,0,-1683.52	0/0:404:356,47:356:12750:47:1669:0,-25.1167,-921.543	0/1:429:355,74:355:12719:74:2639:-23.5828,0,-894.218	0/0:358:323,35:323:11548:35:1244:0,-30.6305,-863.19	0/0:603:524,79:524:18723:79:2777:0,-7.73874,-1340.02	0/1:206:171,35:171:6132:35:1244:-15.777,0,-437.168	0/1:347:295,52:295:10515:52:1825:-5.93398,0,-754.891	0/1:591:483,107:483:17264:107:3779:-57.9587,0,-1192.52	0/1:173:148,25:148:5270:25:900:-3.50389,0,-382.663	0/0:356:315,41:315:11233:41:1463:0,-16.3503,-819.918	0/0:296:256,40:256:9123:40:1428:0,-0.342992,-670.624	0/0:226:223,3:223:8004:3:108:0,-61.1254,-704.824	0/0:260:232,28:232:8275:28:1000:0,-18.2847,-629.011	0/0:112:101,11:101:3602:11:396:0,-8.59698,-270.297	0/0:74:68,6:68:2440:6:212:0,-9.25589,-201.364	0/1:553:468,85:468:16710:85:3035:-8.87863,0,-1150.71	0/0:133:115,18:115:4120:18:644:0,-0.0380817,-301.811	0/0:187:182,5:182:6525:5:180:0,-44.9448,-571.922	0/0:172:170,2:170:6076:2:72:0,-47.09,-525.944	0/0:234:201,33:201:7160:33:1184:0,-2.30795,-531.854	0/0:837:744,92:744:26553:92:3267:0,-48.646,-1907.93	0/0:170:168,2:168:6036:2:72:0,-46.0739,-531.124	0/1:172:146,26:146:5210:26:936:-6.19512,0,-376.9	0/1:581:492,89:492:17595:89:3172:-21.8726,0,-1225.12	0/1:209:172,37:172:6143:37:1320:-13.1173,0,-424.269	0/1:287:225,62:225:8036:62:2216:-50.4863,0,-564.017	0/1:301:254,47:254:9062:47:1680:-13.5379,0,-657.315	0/0:479:419,60:419:14948:60:2156:0,-12.1314,-1064.78	0/0:810:770,38:770:27607:38:1347:0,-165.538,-2283.21	0/1:189:153,36:153:5472:36:1275:-20.4786,0,-393.441	0/0:413:362,50:362:12953:50:1763:0,-14.0925,-937.741	0/0:219:193,26:193:6881:26:931:0,-8.16934,-530.984	0/1:297:253,44:253:9037:44:1549:-4.6658,0,-644.292	0/0:380:335,45:335:11972:45:1604:0,-18.1603,-842.15	0/1:818:691,127:691:24703:127:4511:-14.7291,0,-1683.24	0/1:603:499,104:499:17888:104:3711:-48.6552,0,-1237.13	0/1:239:200,39:200:7160:39:1388:-12.2026,0,-518.649	0/0:284:258,26:258:9268:26:932:0,-29.7482,-673.081	0/0:287:281,6:281:10070:6:216:0,-73.3412,-883.322	0/1:287:237,50:237:8508:50:1766:-17.0909,0,-579.774	0/0:325:286,39:286:10220:39:1373:0,-14.0382,-753.734	0/1:1013:851,160:851:30422:160:5714:-48.2606,0,-2154.08	0/0:527:476,51:476:17024:51:1824:0,-45.8537,-1244.75	0/0:786:709,77:709:25355:77:2739:0,-66.9998,-1877.44	0/0:558:482,76:482:17191:76:2680:0,-1.02151,-1198.99	0/0:816:746,70:746:26662:70:2472:0,-91.837,-2020.11	0/1:98:84,14:84:3004:14:476:-0.118018,0,-207.927	0/0:365:323,41:323:11533:41:1442:0,-22.3955,-843.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chr08	29108841	.	A	G	127350	PASS	AB=0.367172;ABP=5900.85;AC=84;AF=0.446809;AN=188;AO=14273;CIGAR=1X;DP=40631;DPB=40631;DPRA=0;EPP=30996.4;EPPR=40966.3;GTI=5;LEN=1;MEANALT=1.06383;MQM=32.011;MQMR=44.5211;NS=94;NUMALT=1;ODDS=1.88537;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=504236;QR=940741;RO=26352;RPL=4;RPP=30961.7;RPPR=321.509;RPR=14269;RUN=1;SAF=4;SAP=30961.7;SAR=14269;SRF=14219;SRP=361.576;SRR=12133;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:206:122,83:122:4364:83:2954:-155.684,0,-302.068	0/1:334:232,102:232:8321:102:3551:-164.337,0,-569.023	0/1:795:447,348:447:15947:348:12356:-675.48,0,-1071.91	0/1:379:198,181:198:7094:181:6438:-367.957,0,-469.417	0/1:164:86,78:86:3064:78:2804:-152.065,0,-193.697	0/1:139:89,50:89:3157:50:1787:-84.6795,0,-212.749	0/1:286:161,125:161:5704:125:4363:-241.41,0,-373.815	0/1:490:288,202:288:10254:202:7125:-379.096,0,-666.694	0/1:329:207,122:207:7383:122:4352:-219.236,0,-499.376	0/1:250:164,86:164:5884:86:3052:-159.274,0,-410.544	0/1:1041:712,329:712:25360:329:11613:-568.771,0,-1783	0/1:627:414,213:414:14768:213:7503:-373.29,0,-1013.07	0/1:923:580,343:580:20633:343:12073:-617.316,0,-1390.26	0/1:792:512,280:512:18281:280:9893:-475.21,0,-1146.97	0/1:739:480,259:480:17137:259:9146:-471.376,0,-1124.29	0/1:435:308,127:308:11005:127:4440:-194.858,0,-734.253	0/1:588:332,256:332:11860:256:9056:-495.652,0,-753.467	0/1:332:202,130:202:7205:130:4598:-238.241,0,-467.15	0/1:381:293,88:293:10457:88:3122:-116.269,0,-778.108	0/1:383:264,119:264:9460:119:4223:-201.055,0,-651.637	0/1:372:232,140:232:8292:140:4902:-254.022,0,-543.078	0/1:218:129,89:129:4628:89:3124:-172.18,0,-291.386	0/1:258:157,101:157:5606:101:3584:-193.494,0,-392.367	0/1:330:172,158:172:6162:158:5599:-309.652,0,-383.861	0/1:213:125,88:125:4452:88:3122:-167.981,0,-303.956	0/1:642:436,206:436:15558:206:7345:-344.887,0,-1059.33	0/1:351:206,145:206:7369:145:5103:-273.06,0,-460.681	0/1:196:136,60:136:4842:60:2118:-98.7484,0,-326.709	0/1:789:418,370:418:14960:370:13063:-761.37,0,-918.019	0/1:209:137,72:137:4877:72:2565:-119.462,0,-321.851	0/1:380:213,167:213:7604:167:5938:-338.202,0,-501.697	0/1:134:114,20:114:4085:20:720:-10.6017,0,-315.412	0/0:225:206,19:206:7408:19:667:0,-16.1502,-599.639	0/0:171:153,18:153:5481:18:639:0,-0.515822,-427.41	0/0:404:380,24:380:13564:24:822:0,-61.6747,-1144.75	0/0:170:151,19:151:5394:19:675:0,-1.06439,-423.998	0/1:1837:1126,710:1126:40114:710:25033:-1377.79,0,-2606.79	0/1:120:70,50:70:2503:50:1770:-92.9892,0,-165.697	0/1:635:500,135:500:17847:135:4772:-162.105,0,-1331.69	0/0:144:134,10:134:4804:10:356:0,-17.5847,-402.727	0/1:821:433,388:433:15481:388:13648:-749.009,0,-984.704	0/1:395:265,130:265:9491:130:4604:-217.795,0,-633.42	0/1:432:268,164:268:9544:164:5816:-284.4,0,-632.418	0/1:365:239,126:239:8517:126:4451:-230.09,0,-579.663	0/1:589:368,221:368:13105:221:7783:-412.431,0,-879.325	0/1:205:129,76:129:4570:76:2683:-137.108,0,-308.221	0/1:345:189,156:189:6761:156:5523:-310.428,0,-445.578	0/1:591:305,286:305:10897:286:10092:-578.132,0,-667.528	0/1:168:112,56:112:4016:56:1982:-96.4562,0,-276.678	0/1:356:212,144:212:7567:144:5090:-286.994,0,-496.624	0/1:295:177,118:177:6325:118:4228:-235.439,0,-437.104	0/0:228:217,11:217:7717:11:381:0,-39.5865,-659.169	0/1:261:177,84:177:6328:84:2942:-143.243,0,-450.606	0/1:110:74,36:74:2628:36:1279:-67.6282,0,-180.531	0/1:75:61,14:61:2188:14:504:-15.1897,0,-171.25	0/1:566:319,247:319:11424:247:8611:-464.536,0,-717.74	0/1:135:73,62:73:2599:62:2194:-123.765,0,-178.511	0/0:184:176,8:176:6292:8:288:0,-34.8607,-542.339	0/0:171:161,10:161:5772:10:356:0,-24.1781,-478.619	0/1:237:144,93:144:5140:93:3304:-171.994,0,-363.429	0/1:832:524,307:524:18739:307:10915:-573.884,0,-1223.95	0/0:168:160,8:160:5726:8:284:0,-27.488,-486.955	0/1:176:101,75:101:3615:75:2652:-146.417,0,-242.923	0/1:584:345,239:345:12325:239:8487:-463.642,0,-787.987	0/1:210:120,90:120:4304:90:3185:-162.235,0,-274.311	0/1:290:133,157:133:4759:157:5500:-326.839,0,-290.127	0/1:298:174,124:174:6184:124:4393:-243.779,0,-417.938	0/1:486:306,180:306:10941:180:6356:-335.155,0,-720.129	0/1:793:672,121:672:24016:121:4288:-79.8385,0,-1831.02	0/1:193:121,72:121:4287:72:2541:-122.868,0,-294.932	0/1:417:259,158:259:9233:158:5577:-303.518,0,-611.994	0/1:224:151,73:151:5382:73:2583:-128.302,0,-396.263	0/1:296:164,132:164:5861:132:4679:-263.409,0,-383.043	0/1:383:244,139:244:8708:139:4924:-252.41,0,-556.288	0/1:817:495,322:495:17683:322:11350:-579.772,0,-1111.97	0/1:600:326,274:326:11666:274:9712:-547.426,0,-720.997	0/1:235:136,99:136:4853:99:3498:-187.725,0,-327.604	0/1:283:196,87:196:7009:87:3037:-143.454,0,-461.452	0/0:280:265,15:265:9474:15:540:0,-45.1294,-805.794	0/1:286:162,124:162:5816:124:4330:-226.213,0,-362.094	0/1:330:194,136:194:6929:136:4817:-263.113,0,-469.778	0/1:1017:526,490:526:18776:490:17257:-1013.24,0,-1185.99	0/1:534:360,174:360:12837:174:6148:-304.051,0,-855.597	0/1:792:526,265:526:18816:265:9338:-478.3,0,-1267.9	0/1:556:364,192:364:12980:192:6781:-338.931,0,-851.169	0/1:811:573,238:573:20389:238:8401:-398.224,0,-1418.82	0/1:98:64,34:64:2292:34:1220:-58.1758,0,-152.255	0/1:368:226,142:226:8080:142:4998:-261.026,0,-543.963	0/1:445:300,145:300:10685:145:5121:-259.149,0,-736.258	0/1:687:590,97:590:21059:97:3454:-51.6739,0,-1616.32	0/1:1132:886,246:886:31606:246:8687:-287.412,0,-2308.9	0/1:390:284,106:284:10085:106:3758:-173.009,0,-707.14	0/1:372:229,143:229:8171:143:5075:-261.35,0,-508.405	0/1:1308:791,517:791:28205:517:18225:-971.302,0,-1828.31
chr08	29108851	.	CTGAGATTACAGTG	CAGAGGTTAGAGTG,CAGAGATTACAGTG,TAGAGGTTAGAGTA	769066	PASS	AB=0.717868,0.147902,0.12416;ABP=14537.4,37963.9,43256.1;AC=115,69,4;AF=0.611702,0.367021,0.0212766;AN=188;AO=30768,5492,4741;CIGAR=1M1X3M1X3M1X4M,1M1X12M,2X3M1X3M1X3M1X;DP=41444;DPB=41443.4;DPRA=0,2.46026,3.02077;EPP=10579.9,3.36615,3.70695;EPPR=11.6962;GTI=10;LEN=14,1,14;MEANALT=7.06383,7.14286,7.07527;MQM=39.1702,57.9809,24.8129;MQMR=60;NS=94;NUMALT=3;ODDS=10415;PAIRED=0,0,0;PAIREDR=0;PAO=0,0,1;PQA=0,0,0;PQR=0;PRO=0;QA=977362,196394,165896;QR=114;RO=4;RPL=30733,5428,4741;RPP=66511.2,11379.3,10298;RPPR=11.6962;RPR=35,64,0;RUN=1,1,1;SAF=9228,2667,2351;SAP=10701.2,12.8808,3.70695;SAR=21540,2825,2390;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:212:0,161,34,17:0:0:161,34,17:5133,1184,594:-486.178,-95.692,-47.2262,-390.548,0,-380.313,-454.398,-63.9417,-358.769,-449.281	1/2:343:0,239,61,38:0:0:239,61,38:7505,2192,1326:-747.974,-177.178,-105.232,-570.849,0,-552.487,-678.037,-107.274,-500.913,-666.597	1/2:812:0,589,132,84:0:0:589,132,84:18604,4722,2938:-1787.92,-381.251,-203.945,-1406.73,0,-1366.99,-1632.28,-225.646,-1251.09,-1606.99	1/1:387:0,319,28,39:0:0:319,28,39:10162,1004,1377:-870.079,-96.0286,0,-788.186,-14.097,-779.758,-793.389,-19.3936,-711.496,-781.649	1/2:166:0,126,21,18:0:0:126,21,18:3858,748,633:-348.76,-61.0308,-23.101,-287.783,0,-281.461,-315.685,-27.9998,-254.708,-310.267	1/2:139:0,106,13,15:0:0:106,13,15:3289,468,525:-286.394,-38.2274,-6.31821,-248.201,0,-244.288,-258.505,-10.3787,-220.311,-253.989	1/1:294:0,246,19,23:0:0:246,19,23:7671,673,813:-654.128,-74.0534,0,-599.301,-19.192,-593.582,-608.546,-28.5058,-553.72,-601.623	1/2:495:0,345,67,79:0:0:345,67,79:10837,2393,2735:-1012.12,-195.152,-91.2962,-817.012,0,-796.843,-864.54,-47.6186,-669.429,-840.759	1/2:339:0,266,31,38:0:0:266,31,38:8399,1112,1335:-729.691,-90.7462,-10.6722,-638.984,0,-629.652,-657.613,-18.7182,-566.906,-646.173	1/2:258:0,176,52,28:0:0:176,52,28:5638,1868,986:-581.801,-151.295,-98.3133,-430.557,0,-414.904,-526.743,-96.2647,-375.499,-518.314	1/1:1065:0,878,78,97:0:0:878,78,97:28467,2783,3367:-2466.79,-264.304,0,-2239.91,-37.3844,-2216.43,-2283.51,-81.0711,-2056.63,-2254.31	1/2:643:0,493,70,73:0:0:493,70,73:15766,2492,2547:-1405.6,-203.145,-54.7369,-1202.5,0,-1181.42,-1267.84,-65.435,-1064.74,-1245.87	1/2:932:0,605,192,124:0:0:605,192,124:18989,6859,4331:-1983.42,-552.695,-370.572,-1430.78,0,-1372.98,-1749.42,-318.726,-1196.78,-1712.09	1/2:803:0,547,115,131:0:0:547,115,131:16488,4128,4589:-1556,-336.734,-172.071,-1219.31,0,-1184.69,-1318.11,-98.8956,-981.417,-1278.68	1/2:747:0,530,102,108:0:0:530,102,108:16581,3647,3812:-1546.97,-297.421,-137.875,-1249.59,0,-1218.88,-1334.64,-85.1315,-1037.26,-1302.13	1/2:446:0,332,56,51:0:0:332,56,51:10206,2007,1782:-933.551,-163.743,-63.8011,-769.855,0,-752.997,-840.204,-70.4398,-676.508,-824.852	1/2:600:0,450,65,82:0:0:450,65,82:14062,2336,2845:-1246.23,-190.625,-55.1611,-1055.65,0,-1036.08,-1096.34,-40.7897,-905.758,-1071.65	1/2:341:0,236,43,57:0:0:236,43,57:7404,1528,1988:-682.805,-124.558,-53.5154,-558.283,0,-545.339,-576.254,-18.0542,-451.732,-559.095	1/2:389:0,319,49,20:0:0:319,49,20:10515,1742,691:-959.14,-137.754,-41.7251,-821.457,0,-806.707,-922.607,-101.247,-784.925,-916.587	1/2:396:0,289,48,54:0:0:289,48,54:9218,1703,1890:-845.776,-138.795,-51.7973,-707.019,0,-692.57,-738.556,-31.6133,-599.8,-722.301	1/2:383:0,284,46,51:0:0:284,46,51:8880,1648,1775:-804.087,-134.458,-48.965,-669.676,0,-655.828,-710.289,-40.7112,-575.877,-694.936	1/3:221:0,147,18,56:0:0:147,18,56:4697,648,1958:-466.983,-110.035,-65.7836,-414.104,-57.1352,-408.685,-356.881,0,-304.001,-340.023	1/2:262:0,200,35,25:0:0:200,35,25:6484,1256,879:-600.999,-102.505,-42.2989,-498.542,0,-488.006,-550.143,-51.6816,-447.685,-542.617	1/2:337:0,236,50,47:0:0:236,50,47:7232,1774,1634:-680.139,-144.591,-73.5481,-535.592,0,-520.54,-593.802,-58.2988,-449.255,-579.654	1/2:210:0,168,26,16:0:0:168,26,16:5326,936,561:-479.558,-76.4499,-25.8768,-403.177,0,-395.35,-450.482,-47.4157,-374.101,-445.665	1/2:652:0,388,166,95:0:0:388,166,95:12012,5960,3294:-1385.12,-484.601,-367.801,-900.569,0,-850.598,-1203.7,-303.212,-719.149,-1175.1	1/3:357:0,267,27,57:0:0:267,27,57:8321,968,2015:-729.282,-103.641,-23.2664,-650.325,-24.6541,-642.197,-625.584,0,-546.627,-608.425	1/2:199:0,121,44,34:0:0:121,44,34:3803,1575,1197:-415.721,-128.478,-92.0534,-287.295,0,-274.05,-353.725,-66.5217,-225.299,-343.49	1/3:803:0,610,62,123:0:0:610,62,123:19358,2219,4333:-1689.83,-229.302,-45.6742,-1508.87,-48.3136,-1490.21,-1460.47,0,-1279.51,-1423.44	1/2:217:0,159,28,26:0:0:159,28,26:4844,1004,893:-444.533,-81.8129,-33.9491,-362.766,0,-354.337,-397.157,-34.477,-315.391,-389.331	1/2:390:0,281,63,40:0:0:281,63,40:8804,2264,1376:-847.817,-184.754,-100.165,-663.108,0,-644.143,-768.158,-105.126,-583.448,-756.117	1/1:138:0,125,8,5:0:0:125,8,5:4175,288,174:-368.397,-37.6288,0,-345.025,-14.1852,-342.617,-359.175,-28.4501,-335.804,-357.67	1/1:226:0,206,11,6:0:0:206,11,6:7122,39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chr08	29602612	.	T	C	11290.2	PASS	AB=0.586392;ABP=75.4232;AC=22;AF=0.117021;AN=188;AO=662;CIGAR=1X;DP=4188;DPB=4188;DPRA=1.23525;EPP=1423.21;EPPR=7603.23;GTI=3;LEN=1;MEANALT=1.03448;MQM=60;MQMR=59.9972;NS=94;NUMALT=1;ODDS=0.0728656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23453;QR=123276;RO=3520;RPL=2;RPP=1423.21;RPPR=7620.56;RPR=660;RUN=1;SAF=0;SAP=1440.53;SAR=662;SRF=2;SRP=7629.23;SRR=3518;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:119:118,0:118:4174:0:0:0,-35.5215,-375.546	0/0:84:84,0:84:2965:0:0:0,-25.2865,-267.084	0/0:7:7,0:7:230:0:0:0,-2.10721,-21.0212	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:31:31,0:31:1096:0:0:0,-9.33193,-98.9499	0/0:25:25,0:25:858:0:0:0,-7.52575,-77.53	0/0:38:38,0:38:1344:0:0:0,-11.4391,-121.26	0/0:51:51,0:51:1757:0:0:0,-15.3525,-158.409	0/0:58:58,0:58:2010:0:0:0,-17.4597,-181.173	0/0:53:53,0:53:1871:0:0:0,-15.9546,-168.655	0/0:59:59,0:59:2064:0:0:0,-17.7608,-186.032	0/0:65:63,1:63:2201:1:36:0,-15.9975,-194.786	0/0:46:46,0:46:1595:0:0:0,-13.8474,-143.839	0/0:52:52,0:52:1797:0:0:0,-15.6536,-162.01	0/0:33:33,0:33:1141:0:0:0,-9.93399,-102.993	0/0:25:25,0:25:872:0:0:0,-7.52575,-78.7964	0/0:23:23,0:23:791:0:0:0,-6.92369,-71.506	0/0:39:39,0:39:1372:0:0:0,-11.7402,-123.779	0/0:91:91,0:91:3199:0:0:0,-27.3937,-288.135	0/0:19:18,1:18:628:1:36:0,-2.12129,-53.2472	0/0:36:36,0:36:1267:0:0:0,-10.8371,-114.332	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:108:32,76:32:1117:76:2719:-212.442,0,-68.3242	0/0:90:90,0:90:3165:0:0:0,-27.0927,-285.077	0/1:22:13,9:13:455:9:324:-22.8832,0,-34.6593	0/0:60:60,0:60:2094:0:0:0,-18.0618,-188.73	0/0:48:47,1:47:1659:1:36:0,-10.8512,-145.999	0/1:71:33,38:33:1151:38:1355:-100.877,0,-82.5222	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:23:23,0:23:792:0:0:0,-6.92369,-71.5969	0/1:15:6,9:6:208:9:308:-23.5353,0,-14.5436	0/0:148:148,0:148:5152:0:0:0,-44.5524,-463.836	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/0:55:55,0:55:1927:0:0:0,-16.5566,-173.706	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:60:24,36:24:847:36:1273:-96.8091,0,-58.4869	0/1:44:26,18:26:912:18:618:-42.6954,0,-69.1505	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:32:32,0:32:1124:0:0:0,-9.63296,-101.468	0/0:40:39,0:39:1338:0:0:0,-11.7402,-120.435	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/0:24:24,0:24:835:0:0:0,-7.22472,-75.4665	0/1:41:15,26:15:524:26:932:-71.8566,0,-35.1474	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:41:41,0:41:1447:0:0:0,-12.3422,-130.525	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:42:16,26:16:545:26:932:-71.5556,0,-36.7274	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:15:7,8:7:248:8:284:-21.3879,0,-18.1487	0/1:98:38,60:38:1327:60:2142:-163.547,0,-90.228	0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4406	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:40:40,0:40:1411:0:0:0,-12.0412,-127.287	0/0:93:92,1:92:3193:1:36:0,-24.3975,-283.999	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:133:133,0:133:4683:0:0:0,-40.037,-421.636	0/0:36:36,0:36:1272:0:0:0,-10.8371,-114.783	0/1:45:17,28:17:600:28:987:-75.5967,0,-40.7828	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:51:50,1:50:1738:1:36:0,-11.7543,-153.105	0/0:59:58,1:58:2042:1:35:0,-14.2621,-180.552	0/0:31:31,0:31:1080:0:0:0,-9.33193,-97.5085	0/1:30:27,3:27:951:3:108:-1.04427,0,-76.8734	0/0:40:40,0:40:1390:0:0:0,-12.0412,-125.395	0/1:16:8,8:8:284:8:284:-21.0869,0,-21.0869	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:53:17,36:17:590:36:1281:-99.6367,0,-37.4696	0/0:36:35,1:35:1235:1:24:0,-8.43719,-109.054	0/0:77:77,0:77:2689:0:0:0,-23.1793,-242.254	0/1:22:6,16:6:207:16:576:-45.5523,0,-12.3442	0/0:29:29,0:29:996:0:0:0,-8.72987,-89.9465	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:37:36,0:36:1276:0:0:0,-10.8371,-114.89	0/1:39:17,22:17:600:22:788:-59.5046,0,-42.589	0/0:75:75,0:75:2634:0:0:0,-22.5772,-237.309	0/0:62:61,0:61:2116:0:0:0,-18.3628,-190.407	0/0:62:62,0:62:2173:0:0:0,-18.6639,-195.836	0/0:19:19,0:19:660:0:0:0,-5.71957,-59.7233	0/0:92:92,0:92:3210:0:0:0,-27.6948,-289.126	0/0:17:17,0:17:582:0:0:0,-5.11751,-52.7013	0/1:67:23,44:23:807:44:1550:-119.621,0,-52.7802	0/1:72:34,38:34:1195:38:1347:-99.8553,0,-86.1804	0/0:60:60,0:60:2115:0:0:0,-18.0618,-190.619	0/1:171:75,96:75:2601:96:3364:-251.504,0,-182.865	0/1:50:12,38:12:409:38:1322:-104.224,0,-22.0839	0/0:91:90,0:90:3147:0:0:0,-27.0927,-283.16	0/0:75:75,0:75:2614:0:0:0,-22.5772,-235.511
chr08	29602615	.	TTGC	ATGC	89275.7	PASS	AB=0.443609;ABP=36.0722;AC=166;AF=0.882979;AN=188;AO=4003;CIGAR=1X3M;DP=4703;DPB=4703;DPRA=0;EPP=8626.07;EPPR=1429.78;GTI=4;LEN=1;MEANALT=1.2766;MQM=59.9915;MQMR=60;NS=94;NUMALT=1;ODDS=0.0789378;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143218;QR=23224;RO=669;RPL=6;RPP=8643.38;RPPR=1429.78;RPR=3997;RUN=1;SAF=2;SAP=8678.05;SAR=4001;SRF=0;SRP=1455.73;SRR=669;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:136:0,135:0:0:135:4841:-435.482,-40.6391,0	1/1:92:0,91:0:0:91:3251:-292.451,-27.3937,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:31:0,31:0:0:31:1096:-98.9477,-9.33193,0	1/1:44:0,44:0:0:44:1575:-142.041,-13.2453,0	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:60:0,60:0:0:60:2156:-194.293,-18.0618,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:67:0,66:0:0:66:2356:-212.017,-19.868,0	1/1:57:0,57:0:0:57:2039:-183.781,-17.1587,0	1/1:62:0,62:0:0:62:2219:-199.974,-18.6639,0	1/1:38:0,38:0:0:38:1341:-120.988,-11.4391,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:47:0,46:0:0:46:1652:-148.716,-13.8474,0	1/1:104:0,104:0:0:104:3701:-333.292,-31.3071,0	1/1:22:1,21:1:36:21:756:-64.7689,-3.02439,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:26:15,11:15:519:11:396:-28.156,0,-39.2094	1/1:21:0,21:0:0:21:752:-68.0016,-6.32163,0	0/1:115:75,39:75:2607:39:1392:-90.9018,0,-200.202	1/1:106:0,104:0:0:104:3736:-336.08,-31.3071,0	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	1/1:56:2,53:2:63:53:1893:-164.648,-10.9181,0	0/1:77:38,39:38:1323:39:1392:-102.399,0,-96.188	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:11:6,5:6:208:5:180:-13.2407,0,-15.7477	1/1:26:0,25:0:0:25:891:-80.1491,-7.52575,0	0/1:16:9,7:9:322:7:252:-18.2125,0,-24.5077	1/1:168:0,163:0:0:163:5835:-524.915,-49.0679,0	1/1:35:0,34:0:0:34:1216:-109.523,-10.235,0	1/1:64:0,64:0:0:64:2278:-205.281,-19.2659,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:64:36,28:36:1232:28:1008:-71.7704,0,-91.9125	0/1:45:19,26:19:665:26:932:-70.6525,0,-46.6282	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:35:0,35:0:0:35:1251:-112.894,-10.5361,0	1/1:43:0,43:0:0:43:1531:-138.082,-12.9443,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:28:0,25:0:0:25:879:-79.0673,-7.52575,0	0/1:49:27,22:27:947:22:788:-56.4943,0,-70.7927	1/1:34:1,33:1:30:33:1179:-103.418,-7.23545,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:46:26,20:26:917:20:711:-50.4683,0,-68.9987	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:16:9,7:9:297:7:252:-18.2125,0,-22.2341	0/1:106:60,45:60:2077:45:1602:-112.502,0,-155.231	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:42:0,41:0:0:41:1468:-132.066,-12.3422,0	1/1:99:1,98:1:36:98:3520:-313.41,-26.2037,0	1/1:10:0,9:0:0:9:324:-29.146,-2.70927,0	1/1:152:0,152:0:0:152:5453:-490.895,-45.7566,0	1/1:45:0,44:0:0:44:1572:-141.412,-13.2453,0	0/1:49:28,21:28:987:21:756:-53.6168,0,-74.3932	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:62:1,61:1:36:61:2188:-193.587,-15.0656,0	1/1:64:0,64:0:0:64:2280:-205.451,-19.2659,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:30:3,27:3:102:27:972:-78.767,0,-0.485475	1/1:47:0,47:0:0:47:1679:-151.396,-14.1484,0	0/1:15:8,7:8:275:7:252:-18.5135,0,-20.5686	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:56:35,20:35:1221:20:720:-48.2123,0,-93.2765	1/1:40:0,40:0:0:40:1416:-127.736,-12.0412,0	1/1:89:0,87:0:0:87:3103:-279.138,-26.1896,0	0/1:23:17,6:17:590:6:216:-12.8668,0,-46.5011	1/1:39:0,39:0:0:39:1376:-124.136,-11.7402,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:45:0,45:0:0:45:1605:-144.739,-13.5464,0	0/1:46:23,23:23:780:23:828:-60.9967,0,-56.6665	1/1:83:0,83:0:0:83:2979:-268.341,-24.9855,0	1/1:69:0,68:0:0:68:2425:-218.264,-20.47,0	1/1:66:0,66:0:0:66:2361:-212.747,-19.868,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:93:0,93:0:0:93:3315:-298.568,-27.9958,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:67:44,23:44:1522:23:824:-54.3143,0,-117.101	0/1:75:38,37:38:1355:37:1319:-96.4339,0,-99.6734	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:187:98,89:98:3396:89:3175:-229.681,0,-249.567	0/1:55:40,15:40:1357:15:540:-32.3799,0,-105.867	1/1:121:0,119:0:0:119:4248:-382.193,-35.8226,0	1/1:88:0,85:0:0:85:3051:-274.458,-25.5876,0
chr08	29602638	.	A	C	11104.7	PASS	AB=0.549831;ABP=28.5471;AC=22;AF=0.117021;AN=188;AO=655;CIGAR=1X;DP=4665;DPB=4665;DPRA=1.09491;EPP=1425.32;EPPR=8673.72;GTI=2;LEN=1;MEANALT=1.04;MQM=60;MQMR=59.9915;NS=94;NUMALT=1;ODDS=0.466568;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23369;QR=143499;RO=4005;RPL=655;RPP=1425.32;RPPR=8691.07;RPR=0;RUN=1;SAF=0;SAP=1425.32;SAR=655;SRF=2;SRP=8682.39;SRR=4003;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:14,0:14:504:0:0:0,-4.21442,-45.3383	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:133:133,0:133:4757:0:0:0,-40.037,-428.286	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.989	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/0:32:32,0:32:1137:0:0:0,-9.63296,-102.637	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:59:58,0:58:2084:0:0:0,-17.4597,-187.47	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.293	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:37:36,0:36:1296:0:0:0,-10.8371,-116.623	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:103:103,0:103:3679:0:0:0,-31.0061,-331.313	0/0:21:20,1:20:720:1:36:0,-2.72335,-61.5305	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:26:11,15:11:396:15:536:-40.748,0,-28.156	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.007	0/1:113:39,74:39:1396:74:2651:-204.82,0,-91.9227	0/0:104:104,0:104:3721:0:0:0,-31.3071,-335.09	0/1:23:14,9:14:500:9:320:-22.2187,0,-38.4125	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:59:57,2:57:2040:2:57:0,-12.3475,-178.459	0/1:77:39,37:39:1396:37:1301:-94.1514,0,-102.701	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:16:7,9:7:237:9:324:-24.6894,0,-16.8426	0/0:167:167,0:167:6000:0:0:0,-50.272,-540.103	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:64:29,35:29:1040:35:1249:-93.4479,0,-74.6484	0/1:44:25,19:25:900:19:684:-48.645,0,-68.0757	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:46:19,27:19:676:27:968:-73.59,0,-47.3206	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:46:20,26:20:720:26:936:-70.7121,0,-51.2814	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:16:7,9:7:252:9:305:-22.9607,0,-18.2125	0/1:104:46,58:46:1644:58:2076:-155.803,0,-116.941	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:97:97,0:97:3479:0:0:0,-29.1999,-313.32	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:154:154,0:154:5540:0:0:0,-46.3586,-498.721	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:50:22,28:22:788:28:1004:-75.6244,0,-56.1933	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:61:60,1:60:2137:1:36:0,-14.7646,-188.998	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.154	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:31:28,3:28:1004:3:108:-0.74324,0,-81.3439	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:14:7,7:7:248:7:248:-18.4498,0,-18.4498	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/1:55:20,35:20:720:35:1241:-95.4359,0,-48.5721	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/1:22:7,15:7:252:15:531:-41.4992,0,-16.4063	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:44:22,22:22:792:22:788:-57.9995,0,-58.3604	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:70:70,0:70:2511:0:0:0,-21.0721,-226.241	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.747	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:65:22,43:22:788:43:1540:-119.326,0,-51.6778	0/1:76:38,38:38:1364:38:1364:-100.182,0,-100.182	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/1:186:89,97:89:3192:97:3480:-257.419,0,-231.512	0/1:55:16,39:16:576:39:1374:-107.399,0,-35.6183	0/0:121:120,0:120:4289:0:0:0,-36.1236,-385.826	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.53
chr08	29852340	.	T	C	136744	PASS	AB=0.453851;ABP=34.4769;AC=167;AF=0.888298;AN=188;AO=6160;CIGAR=1X;DP=7110;DPB=7110;DPRA=0;EPP=13379.3;EPPR=2055.05;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.919;MQMR=59.8984;NS=94;NUMALT=1;ODDS=0.303663;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220155;QR=33893;RO=945;RPL=0;RPP=13379.3;RPPR=2055.05;RPR=6160;RUN=1;SAF=6160;SAP=13379.3;SAR=0;SRF=945;SRP=2055.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,56:0:0:56:2003:-180.479,-16.8577,0	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	1/1:191:0,191:0:0:191:6840:-615.67,-57.4967,0	1/1:220:0,220:0:0:220:7852:-706.708,-66.2266,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:83:0,83:0:0:83:2968:-267.331,-24.9855,0	1/1:114:0,114:0:0:114:4064:-365.631,-34.3174,0	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:45:0,45:0:0:45:1611:-145.28,-13.5464,0	1/1:68:0,68:0:0:68:2419:-217.948,-20.47,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:53:1,52:1:36:52:1860:-164.081,-12.3563,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:44:0,44:0:0:44:1560:-140.69,-13.2453,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:145:1,144:1:36:144:5137:-458.845,-40.0511,0	1/1:133:0,133:0:0:133:4764:-428.911,-40.037,0	1/1:99:0,98:0:0:98:3496:-314.471,-29.5009,0	1/1:97:0,97:0:0:97:3457:-311.342,-29.1999,0	0/1:39:19,20:19:684:20:699:-51.4911,0,-50.1502	1/1:76:0,76:0:0:76:2709:-244.053,-22.8783,0	0/1:219:124,95:124:4429:95:3394:-239.75,0,-332.855	1/1:163:0,162:0:0:162:5784:-520.443,-48.7669,0	0/1:29:11,18:11:396:18:632:-48.4672,0,-27.2529	1/1:198:0,198:0:0:198:7092:-638.316,-59.6039,0	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	0/1:129:67,62:67:2392:62:2216:-160.843,0,-176.705	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:16:0,16:0:0:16:568:-51.4294,-4.81648,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:197:0,197:0:0:197:7060:-635.133,-59.3029,0	1/1:99:2,97:2:72:97:3480:-306.574,-22.9652,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:120:63,57:63:2256:57:2036:-147.389,0,-167.179	0/1:29:17,12:17:608:12:428:-30.1289,0,-46.3222	1/1:128:0,128:0:0:128:4580:-412.343,-38.5318,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:80:0,80:0:0:80:2868:-258.334,-24.0824,0	1/1:73:0,73:0:0:73:2575:-231.868,-21.9752,0	0/1:161:84,77:84:3020:77:2756:-199.816,0,-223.562	1/1:89:4,85:4:144:85:3020:-258.716,-13.4781,0	1/1:91:0,91:0:0:91:3259:-293.522,-27.3937,0	1/1:151:0,151:0:0:151:5416:-487.565,-45.4555,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:204:128,76:128:4596:76:2708:-182.396,0,-352.341	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:133:60,73:60:2148:73:2601:-194.299,0,-153.55	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:175:0,175:0:0:175:6253:-561.737,-52.6803,0	1/1:113:1,112:1:36:112:3988:-355.514,-30.4181,0	0/1:54:26,28:26:932:28:1000:-74.0598,0,-67.8124	1/1:54:1,53:1:36:53:1888:-166.6,-12.6573,0	1/1:126:1,124:1:36:124:4436:-395.813,-34.3903,0	1/1:91:2,89:2:72:89:3180:-279.588,-20.557,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:74:0,74:0:0:74:2636:-237.488,-22.2762,0	1/1:29:0,28:0:0:28:985:-88.6694,-8.42884,0	0/1:21:7,14:7:252:14:473:-36.5696,0,-16.7073	1/1:105:0,105:0:0:105:3736:-336.425,-31.6082,0	0/1:48:15,33:15:540:33:1184:-92.4189,0,-34.4871	1/1:78:0,77:0:0:77:2756:-247.922,-23.1793,0	1/1:189:0,189:0:0:189:6735:-606.067,-56.8947,0	0/1:99:62,37:62:2228:37:1320:-89.3,0,-170.976	1/1:107:0,107:0:0:107:3842:-345.975,-32.2102,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:82:1,81:1:36:81:2879:-255.746,-21.0862,0	0/1:121:71,50:71:2548:50:1792:-125.138,0,-193.146	1/1:133:0,133:0:0:133:4769:-429.364,-40.037,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:93:1,92:1:36:92:3287:-292.436,-24.3975,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:53:29,24:29:1044:24:864:-62.128,0,-78.3202	0/1:69:37,32:37:1328:32:1136:-81.7777,0,-99.0512	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	0/1:79:41,38:41:1472:38:1356:-98.5591,0,-108.995	0/1:74:58,16:58:2084:16:576:-29.8763,0,-164.364	1/1:137:0,137:0:0:137:4900:-441.139,-41.2411,0	1/1:62:1,61:1:36:61:2192:-193.947,-15.0656,0
chr08	29852365	.	A	G	16599.6	PASS	AB=0.541518;ABP=28.254;AC=21;AF=0.111702;AN=188;AO=928;CIGAR=1X;DP=7079;DPB=7079;DPRA=1.26888;EPP=1823.31;EPPR=10994.7;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9041;MQMR=59.9182;NS=94;NUMALT=1;ODDS=0.948426;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33161;QR=220364;RO=6149;RPL=23;RPP=1823.31;RPPR=10994.7;RPR=905;RUN=1;SAF=928;SAP=2018.14;SAR=0;SRF=6149;SRP=13355.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.26	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.829	0/0:191:191,0:191:6837:0:0:0,-57.4967,-615.081	0/0:218:218,0:218:7797:0:0:0,-65.6245,-701.759	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.227	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.553	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.846	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:53:52,1:52:1864:1:36:0,-12.3563,-164.441	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.612	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:147:147,0:147:5272:0:0:0,-44.2514,-474.587	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.512	0/0:99:99,0:99:3541:0:0:0,-29.802,-318.878	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/1:40:21,19:21:756:19:684:-49.8491,0,-56.326	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.174	0/1:216:94,122:94:3371:122:4378:-329.17,0,-238.582	0/0:163:163,0:163:5856:0:0:0,-49.0679,-527.126	0/1:29:18,11:18:644:11:392:-26.8902,0,-49.5516	0/0:196:196,0:196:7040:0:0:0,-59.0019,-633.636	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:129:62,67:62:2208:67:2396:-177.064,0,-160.124	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.7909	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:195:194,1:194:6934:1:36:0,-55.1026,-620.499	0/0:99:97,2:97:3476:2:72:0,-22.9652,-306.215	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:122:59,63:59:2120:63:2268:-167.656,0,-154.343	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/0:127:127,0:127:4556:0:0:0,-38.2308,-410.205	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.792	0/1:160:76,84:76:2736:84:3009:-222.873,0,-198.317	0/0:94:90,4:90:3209:4:136:0,-15.7219,-276.457	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.981	0/0:152:152,0:152:5445:0:0:0,-45.7566,-490.172	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:203:77,124:77:2749:124:4435:-338.392,0,-186.783	0/0:46:46,0:46:1637:0:0:0,-13.8474,-147.617	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:131:71,60:71:2537:60:2148:-154.153,0,-189.109	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:175:174,1:174:6240:1:36:0,-49.082,-557.165	0/0:117:116,1:116:4145:1:36:0,-31.6222,-369.634	0/1:52:26,26:26:924:26:909:-66.4615,0,-67.8241	0/0:55:54,1:54:1928:1:36:0,-12.9584,-170.198	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/0:90:88,2:88:3153:2:72:0,-20.256,-277.156	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/1:47:33,14:33:1150:14:504:-31.5497,0,-89.6536	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:188:188,0:188:6728:0:0:0,-56.5936,-605.437	0/1:98:38,60:38:1364:60:2126:-162.106,0,-93.5598	0/0:105:105,0:105:3759:0:0:0,-31.6081,-338.509	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.024	0/1:120:50,70:50:1800:70:2512:-190.208,0,-126.141	0/0:133:133,0:133:4764:0:0:0,-40.037,-428.917	0/0:68:68,0:68:2433:0:0:0,-20.47,-219.224	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:94:93,1:93:3348:1:21:0,-26.1969,-299.42	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:50:23,27:23:824:27:968:-72.3859,0,-59.4318	0/1:68:32,36:32:1152:36:1269:-94.0407,0,-83.5197	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:80:39,41:39:1396:41:1476:-109.054,0,-100.999	0/1:72:16,56:16:576:56:1982:-156.787,0,-30.4783	0/0:137:137,0:137:4871:0:0:0,-41.2411,-438.527	0/0:63:62,1:62:2232:1:36:0,-15.3666,-197.545
chr08	29909207	.	A	G	305931	PASS	AB=0.414539;ABP=427.977;AC=152;AF=0.808511;AN=188;AO=12152;CIGAR=1X;DP=16093;DPB=16093;DPRA=0;EPP=26390.7;EPPR=8556.44;GTI=6;LEN=1;MEANALT=1.02128;MQM=39.8388;MQMR=59.8208;NS=94;NUMALT=1;ODDS=1.31968;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=431120;QR=140800;RO=3939;RPL=5997;RPP=7.47118;RPPR=13.9702;RPR=6155;RUN=1;SAF=5997;SAP=7.47118;SAR=6155;SRF=2040;SRP=13.9702;SRR=1899;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:111:0,111:0:0:111:3942:-325.462,-33.4143,0	1/1:145:0,145:0:0:145:5165:-439.535,-43.6494,0	0/1:253:154,99:154:5486:99:3537:-222.886,0,-417.688	1/1:291:0,291:0:0:291:10375:-866.155,-87.5997,0	0/1:185:112,73:112:4020:73:2592:-166.454,0,-306.297	0/1:104:57,47:57:2044:47:1684:-114.029,0,-151.557	1/1:100:0,100:0:0:100:3546:-295.061,-30.103,0	1/1:318:0,318:0:0:318:11296:-963.855,-95.7275,0	1/1:229:0,229:0:0:229:8129:-683.634,-68.9359,0	1/1:149:0,149:0:0:149:5275:-450.268,-44.8535,0	1/1:72:0,72:0:0:72:2559:-218.041,-21.6742,0	1/1:207:0,207:0:0:207:7329:-615.808,-62.3132,0	1/1:151:0,151:0:0:151:5389:-448.774,-45.4555,0	1/1:133:0,133:0:0:133:4681:-402.43,-40.037,0	1/1:133:1,132:1:36:132:4705:-389.029,-36.8494,0	1/1:112:0,112:0:0:112:3968:-337.163,-33.7154,0	1/1:70:0,70:0:0:70:2494:-208.793,-21.0721,0	1/1:46:0,46:0:0:46:1629:-138.683,-13.8474,0	1/1:46:0,46:0:0:46:1630:-137.436,-13.8474,0	1/1:286:0,286:0:0:286:10199:-865.909,-86.0946,0	1/1:276:0,276:0:0:276:9776:-822.068,-83.0843,0	0/1:235:190,45:190:6776:45:1608:-64.9998,0,-539.118	1/1:206:0,206:0:0:206:7297:-621.079,-62.0122,0	0/1:84:21,63:21:752:63:2233:-162.106,0,-42.7197	1/1:152:1,151:1:36:151:5354:-439.169,-42.1583,0	0/1:550:290,260:290:10370:260:9243:-619.557,0,-767.061	0/1:405:218,187:218:7809:187:6662:-435.068,0,-580.92	1/1:63:0,63:0:0:63:2217:-185.6,-18.9649,0	1/1:437:1,436:1:36:436:15490:-1298.8,-127.971,0	1/1:200:6,194:6:212:194:6863:-562.31,-40.8268,0	0/1:181:93,88:93:3306:88:3132:-212.244,0,-243.273	0/1:18:13,5:13:468:5:176:-9.75389,0,-37.0411	1/1:13:0,13:0:0:13:464:-39.5531,-3.91339,0	0/1:7:6,1:6:212:1:36:-1.4138,0,-17.3176	1/1:11:0,11:0:0:11:374:-32.8404,-3.31133,0	1/1:7:0,7:0:0:7:252:-22.1576,-2.10721,0	1/1:421:0,421:0:0:421:14949:-1256.02,-126.734,0	0/1:232:141,91:141:4989:91:3235:-203.645,0,-379.29	0/1:76:42,34:42:1508:34:1208:-80.4744,0,-113.13	1/1:3:0,3:0:0:3:108:-9.6878,-0.90309,0	0/1:303:193,110:193:6916:110:3917:-246.839,0,-531.055	0/1:42:26,16:26:936:16:568:-35.2796,0,-71.9162	0/1:494:233,261:233:8309:261:9262:-629.791,0,-599.004	0/1:111:70,41:70:2500:41:1472:-88.3439,0,-191.839	1/1:158:0,158:0:0:158:5557:-466.905,-47.5627,0	0/1:236:136,100:136:4842:100:3560:-229.192,0,-362.157	0/1:361:201,160:201:7194:160:5681:-373.187,0,-538.275	0/1:347:204,143:204:7309:143:5065:-319.005,0,-553.394	1/1:198:0,198:0:0:198:7077:-588.422,-59.6039,0	1/1:256:0,256:0:0:256:9093:-779.967,-77.0637,0	1/1:151:0,151:0:0:151:5361:-458.002,-45.4555,0	0/1:19:10,9:10:356:9:324:-19.591,0,-26.6617	0/1:253:164,89:164:5849:89:3161:-193.636,0,-450.35	0/1:155:91,64:91:3272:64:2291:-151.903,0,-247.103	0/1:6:4,2:4:144:2:72:-4.69898,0,-11.5074	0/1:235:136,99:136:4851:99:3524:-231.06,0,-366.003	0/1:112:47,65:47:1667:65:2299:-155.394,0,-116.601	1/1:5:0,5:0:0:5:176:-15.1894,-1.50515,0	0/1:6:2,4:2:72:4:144:-10.7556,0,-5.03054	1/1:150:0,150:0:0:150:5284:-448.736,-45.1545,0	1/1:159:0,159:0:0:159:5595:-465.743,-47.8638,0	1/1:9:0,9:0:0:9:324:-26.484,-2.70927,0	0/1:272:200,72:200:7140:72:2562:-137.384,0,-560.749	1/1:268:0,268:0:0:268:9498:-804.763,-80.676,0	1/1:85:0,85:0:0:85:2967:-258.946,-25.5876,0	1/1:134:0,134:0:0:134:4685:-393.547,-40.338,0	1/1:287:1,285:1:36:285:10098:-838.284,-82.7812,0	0/1:312:237,75:237:8487:75:2655:-136.675,0,-669.902	1/1:44:2,42:2:72:42:1467:-118.507,-6.4086,0	1/1:124:0,124:0:0:124:4385:-377.284,-37.3277,0	1/1:67:0,67:0:0:67:2391:-200.421,-20.169,0	1/1:42:0,42:0:0:42:1482:-125.927,-12.6433,0	1/1:202:0,202:0:0:202:7143:-607.96,-60.8081,0	0/1:182:98,84:98:3516:84:2993:-194.237,0,-261.633	1/1:313:0,313:0:0:313:11079:-930.762,-94.2224,0	1/1:284:0,284:0:0:284:10061:-863.787,-85.4925,0	1/1:299:2,297:2:72:297:10574:-897.923,-83.1712,0	1/1:193:0,193:0:0:193:6881:-582.381,-58.0988,0	0/1:17:10,7:10:360:7:248:-15.7309,0,-27.6268	1/1:270:0,270:0:0:270:9637:-818.62,-81.2781,0	0/1:261:147,114:147:5263:114:4079:-263.994,0,-395.162	1/1:492:2,489:2:68:489:17296:-1457.43,-141.699,0	1/1:81:0,81:0:0:81:2868:-239.495,-24.3834,0	1/1:105:0,105:0:0:105:3714:-313.935,-31.6082,0	0/1:107:62,45:62:2219:45:1585:-101.222,0,-167.764	1/1:234:1,233:1:36:233:8171:-680.983,-66.8427,0	1/1:53:0,53:0:0:53:1874:-155.394,-15.9546,0	0/1:177:104,73:104:3723:73:2603:-165.753,0,-281.923	1/1:154:0,154:0:0:154:5494:-456.482,-46.3586,0	0/1:65:43,22:43:1544:22:768:-45.2336,0,-119.686	0/1:149:78,71:78:2800:71:2508:-167.165,0,-207.383	0/1:147:89,58:89:3187:58:2068:-127.119,0,-242.802	1/1:7:0,7:0:0:7:252:-20.7475,-2.10721,0	1/1:182:0,182:0:0:182:6426:-533.294,-54.7875,0
chr08	29909238	.	A	G	114944	PASS	AB=0.427064;ABP=156.32;AC=152;AF=0.808511;AN=188;AO=6163;CIGAR=1X;DP=8083;DPB=8083;DPRA=21.7177;EPP=12347.1;EPPR=3974.66;GTI=3;LEN=1;MEANALT=1.04301;MQM=34.5106;MQMR=59.8032;NS=94;NUMALT=1;ODDS=0.0571636;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219101;QR=68603;RO=1916;RPL=6041;RPP=12347.1;RPPR=3974.66;RPR=122;RUN=1;SAF=0;SAP=13385.8;SAR=6163;SRF=0;SRP=4163.55;SRR=1916;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:77:0,77:0:0:77:2732:-219.097,-23.1793,0	1/1:72:0,72:0:0:72:2524:-205.347,-21.6742,0	0/1:78:41,37:41:1446:37:1319:-81.5019,0,-106.947	1/1:156:0,155:0:0:155:5494:-436.888,-46.6597,0	0/1:68:46,22:46:1648:22:784:-43.2647,0,-128.139	0/1:23:8,15:8:284:15:540:-37.2241,0,-18.9797	1/1:61:0,61:0:0:61:2172:-172.964,-18.3628,0	1/1:124:0,124:0:0:124:4406:-355.205,-37.3277,0	1/1:131:0,130:0:0:130:4641:-376.004,-39.1339,0	1/1:61:0,61:0:0:61:2166:-173.091,-18.3628,0	1/1:28:0,28:0:0:28:1000:-79.6872,-8.42884,0	1/1:123:0,123:0:0:123:4307:-350.512,-37.0267,0	1/1:104:0,104:0:0:104:3690:-299.438,-31.3071,0	1/1:54:0,54:0:0:54:1918:-155.884,-16.2556,0	1/1:80:0,80:0:0:80:2827:-227.699,-24.0824,0	1/1:54:0,54:0:0:54:1927:-156.827,-16.2556,0	1/1:41:0,41:0:0:41:1406:-113.454,-12.3422,0	1/1:17:0,17:0:0:17:608:-49.8372,-5.11751,0	1/1:23:0,23:0:0:23:828:-66.5009,-6.92369,0	1/1:113:0,113:0:0:113:4022:-321.065,-34.0164,0	1/1:158:0,158:0:0:158:5608:-452.932,-47.5627,0	0/1:142:116,26:116:4146:26:906:-32.5703,0,-330.551	1/1:87:2,85:2:72:85:3035:-235.33,-19.4127,0	0/1:60:19,41:19:684:41:1464:-100.571,0,-43.806	1/1:107:1,106:1:36:106:3777:-298.156,-28.6119,0	0/1:286:146,140:146:5236:140:4950:-320.717,0,-385.282	0/1:254:133,121:133:4780:121:4344:-275.223,0,-353.893	1/1:40:0,40:0:0:40:1436:-115.409,-12.0412,0	1/1:289:0,289:0:0:289:10299:-845.247,-86.9977,0	1/1:84:2,82:2:72:82:2924:-228.041,-18.4498,0	0/1:87:49,38:49:1755:38:1364:-83.0711,0,-131.93	0/1:10:7,3:7:248:3:108:-6.07895,0,-19.6539	1/1:5:0,5:0:0:5:176:-14.0147,-1.50515,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:3:0,3:0:0:3:108:-9.08924,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.1677,-0.60206,0	1/1:280:0,280:0:0:280:9968:-815.566,-84.2884,0	0/1:130:80,50:80:2864:50:1779:-105.413,0,-218.863	0/1:38:21,17:21:756:17:608:-38.8378,0,-56.9247	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	0/1:99:62,37:62:2220:37:1310:-77.408,0,-170.182	0/1:22:11,11:11:396:11:392:-25.3245,0,-29.3601	0/1:273:120,153:120:4296:153:5448:-356.971,0,-304.635	0/1:58:35,23:35:1260:23:824:-47.8402,0,-96.2457	1/1:79:1,78:1:36:78:2761:-214.171,-20.2146,0	0/1:159:90,68:90:3232:68:2436:-151.659,0,-243.173	0/1:177:104,73:104:3718:73:2596:-157.404,0,-281.456	0/1:151:78,73:78:2792:73:2598:-160.976,0,-206.065	1/1:112:0,112:0:0:112:3975:-314.946,-33.7154,0	1/1:88:1,87:1:36:87:3116:-243.601,-22.9238,0	1/1:70:0,70:0:0:70:2482:-204.159,-21.0721,0	0/1:15:6,9:6:216:9:320:-20.6129,0,-15.2751	0/1:100:59,41:59:2116:41:1445:-87.0159,0,-160.598	0/1:42:26,16:26:936:16:568:-34.7495,0,-71.9162	1/1:1:0,1:0:0:1:36:-3.29902,-0.30103,0	0/1:117:77,40:77:2760:40:1424:-80.2896,0,-213.42	0/1:74:36,38:36:1279:38:1348:-84.7185,0,-93.1362	1/1:5:0,5:0:0:5:180:-14.41,-1.50515,0	0/1:4:2,2:2:72:2:68:-4.83176,0,-5.6326	1/1:67:0,67:0:0:67:2361:-190.452,-20.169,0	1/1:94:0,94:0:0:94:3344:-266.432,-28.2968,0	1/1:8:0,8:0:0:8:288:-23.2697,-2.40824,0	0/1:139:105,34:105:3764:34:1208:-57.3806,0,-297.112	1/1:119:0,119:0:0:119:4244:-338.583,-35.8226,0	1/1:18:0,18:0:0:18:628:-51.2358,-5.41854,0	1/1:74:0,74:0:0:74:2656:-211.129,-22.2762,0	1/1:150:1,149:1:36:149:5340:-417.146,-41.5562,0	0/1:116:96,20:96:3430:20:712:-22.9297,0,-273.954	1/1:24:2,22:2:72:22:770:-54.4541,-0.387998,0	1/1:42:0,42:0:0:42:1466:-120.139,-12.6433,0	1/1:44:0,44:0:0:44:1545:-127.803,-13.2453,0	1/1:18:0,18:0:0:18:644:-50.9543,-5.41854,0	1/1:82:0,82:0:0:82:2910:-233.701,-24.6845,0	0/1:120:57,63:57:2040:63:2264:-147.464,0,-147.519	1/1:171:0,171:0:0:171:6119:-489.521,-51.4761,0	1/1:84:1,83:1:36:83:2941:-228.593,-21.7197,0	1/1:119:1,118:1:36:118:4198:-338.466,-32.2243,0	1/1:92:0,92:0:0:92:3252:-262.311,-27.6948,0	0/1:14:7,7:7:244:7:252:-16.561,0,-18.085	1/1:133:0,132:0:0:132:4703:-378.282,-39.736,0	0/1:133:77,56:77:2759:56:2000:-119.967,0,-208.501	1/1:229:0,229:0:0:229:8157:-651.059,-68.9359,0	1/1:44:0,44:0:0:44:1567:-124.113,-13.2453,0	1/1:52:0,52:0:0:52:1852:-148.571,-15.6536,0	0/1:58:35,23:35:1256:23:805:-46.4409,0,-95.8855	1/1:127:0,127:0:0:127:4502:-359.718,-38.2308,0	1/1:36:0,36:0:0:36:1234:-99.3176,-10.8371,0	0/1:106:64,42:64:2300:42:1512:-89.9448,0,-175.341	1/1:85:0,85:0:0:85:3022:-242.167,-25.5876,0	0/1:19:11,8:11:396:8:284:-17.7744,0,-30.2632	0/1:69:34,35:34:1190:35:1252:-79.8289,0,-86.6324	0/1:77:42,35:42:1508:35:1247:-75.6164,0,-112.835	1/1:6:0,6:0:0:6:216:-17.5319,-1.80618,0	1/1:113:0,113:0:0:113:4006:-320.354,-34.0164,0
chr08	29982788	.	C	T	19416.3	PASS	AB=0.468811;ABP=24.547;AC=36;AF=0.191489;AN=188;AO=1209;CIGAR=1X;DP=7926;DPB=7926;DPRA=0.958741;EPP=2628.32;EPPR=14573.6;GTI=0;LEN=1;MEANALT=1.02326;MQM=59.2275;MQMR=59.9156;NS=94;NUMALT=1;ODDS=1.71051;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43401;QR=239809;RO=6710;RPL=1209;RPP=2628.32;RPPR=14573.6;RPR=0;RUN=1;SAF=0;SAP=2628.32;SAR=1209;SRF=0;SRP=14573.6;SRR=6710;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:173:172,0:172:6141:0:0:0,-51.7772,-552.159	0/1:97:65,32:65:2324:32:1148:-74.4083,0,-180.151	0/0:148:148,0:148:5274:0:0:0,-44.5524,-474.793	0/1:36:27,9:27:972:9:324:-18.6672,0,-76.9608	0/1:34:15,19:15:540:19:680:-50.6593,0,-38.7015	0/0:117:117,0:117:4158:0:0:0,-35.2205,-374.401	0/0:149:149,0:149:5311:0:0:0,-44.8535,-478.111	0/0:41:41,0:41:1449:0:0:0,-12.3422,-130.704	0/0:116:115,1:115:4124:1:36:0,-31.3212,-367.745	0/0:156:156,0:156:5584:0:0:0,-46.9607,-502.608	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.21	0/0:117:116,0:116:4149:0:0:0,-34.9195,-373.203	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.221	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.249	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.594	0/0:158:158,0:158:5634:0:0:0,-47.5627,-507.177	0/0:282:281,1:281:10064:1:36:0,-81.2922,-902.095	0/1:40:8,32:8:288:32:1137:-90.5907,0,-14.2262	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:48:26,22:26:932:22:784:-56.3886,0,-69.7494	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.665	0/1:165:93,71:93:3321:71:2552:-180.197,0,-249.37	0/1:186:101,85:101:3613:85:3056:-219.269,0,-269.383	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:159:158,1:158:5634:1:36:0,-44.2655,-503.58	0/0:131:130,1:130:4589:1:36:0,-35.8367,-409.571	0/1:67:34,33:34:1216:33:1188:-87.0549,0,-89.5776	0/1:15:10,5:10:360:5:176:-11.6692,0,-28.2289	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.494	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:30:30,0:30:1034:0:0:0,-9.0309,-93.3647	0/0:203:203,0:203:7296:0:0:0,-61.1091,-656.685	0/1:95:42,53:42:1482:53:1900:-142.549,0,-105.073	0/1:107:53,54:53:1908:54:1936:-142.131,0,-139.786	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:103:51,52:51:1836:52:1872:-137.675,0,-134.515	0/1:59:39,20:39:1400:20:720:-47.295,0,-108.537	0/1:111:61,50:61:2169:50:1800:-128.79,0,-162.061	0/1:50:18,32:18:648:32:1152:-88.9386,0,-43.6004	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.329	0/1:65:39,26:39:1381:26:936:-64.9916,0,-105.02	0/1:60:32,28:32:1152:28:1000:-72.1819,0,-85.9283	0/1:93:51,42:51:1813:42:1504:-107.652,0,-135.454	0/0:81:81,0:81:2889:0:0:0,-24.3834,-259.618	0/0:139:139,0:139:5000:0:0:0,-41.8432,-450.142	0/0:114:114,0:114:4069:0:0:0,-34.3174,-366.289	0/1:11:3,8:3:108:8:284:-22.5897,0,-6.76384	0/1:114:69,45:69:2480:45:1620:-111.63,0,-189.129	0/1:29:17,12:17:608:12:428:-30.1289,0,-46.3222	0/1:26:14,12:14:504:12:428:-31.032,0,-37.8606	0/1:38:16,22:16:561:22:792:-60.1634,0,-39.378	0/1:13:9,4:9:320:4:144:-9.40023,0,-24.0268	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:22:17,5:17:608:5:180:-9.9294,0,-48.4294	0/0:107:107,0:107:3799:0:0:0,-32.2102,-342.105	0/0:124:124,0:124:4417:0:0:0,-37.3277,-397.698	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:85:47,38:47:1688:38:1364:-96.0182,0,-126.619	0/0:126:120,6:120:4304:6:216:0,-18.1393,-366.622	0/0:141:141,0:141:5026:0:0:0,-42.4452,-452.484	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.357	0/0:110:109,0:109:3885:0:0:0,-32.8123,-349.633	0/1:115:41,74:41:1468:74:2664:-204.702,0,-97.7976	0/0:86:83,3:83:2976:3:108:0,-15.8134,-257.997	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.417	0/0:101:101,0:101:3602:0:0:0,-30.404,-324.383	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:64:63,0:63:2256:0:0:0,-18.9649,-203.091	0/1:49:22,27:22:769:27:972:-73.0474,0,-54.7781	0/0:82:82,0:82:2891:0:0:0,-24.6845,-260.423	0/0:148:148,0:148:5286:0:0:0,-44.5524,-475.873	0/0:95:95,0:95:3374:0:0:0,-28.5978,-303.874	0/0:94:93,1:93:3336:1:36:0,-24.6985,-296.857	0/1:22:12,10:12:428:10:360:-26.1216,0,-32.2361	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:76:35,41:35:1256:41:1464:-109.119,0,-90.4637	0/0:138:138,0:138:4948:0:0:0,-41.5421,-445.466	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.785	0/1:84:50,34:50:1788:34:1220:-84.7668,0,-135.916	0/0:120:119,0:119:4215:0:0:0,-35.8226,-379.17	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:85:43,42:43:1532:42:1512:-110.458,0,-112.555	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.762	0/1:109:60,49:60:2148:49:1752:-124.978,0,-160.774	0/1:149:96,53:96:3448:53:1908:-125.437,0,-265.677	0/1:73:26,47:26:917:47:1688:-129.329,0,-60.8694	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:112:111,0:111:3980:0:0:0,-33.4143,-357.713
chr08	30021778	.	A	G	19798.2	PASS	AB=0.502558;ABP=3.14359;AC=37;AF=0.196809;AN=188;AO=1201;CIGAR=1X;DP=6346;DPB=6346;DPRA=1.21706;EPP=2610.95;EPPR=11036.7;GTI=1;LEN=1;MEANALT=1;MQM=59.9992;MQMR=59.9949;NS=94;NUMALT=1;ODDS=1.54945;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42888;QR=184546;RO=5145;RPL=0;RPP=2610.95;RPPR=11036.7;RPR=1201;RUN=1;SAF=1201;SAP=2610.95;SAR=0;SRF=5145;SRP=11175.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:77:76,1:76:2724:1:36:0,-19.581,-241.805	0/1:93:47,46:47:1688:46:1639:-119.802,0,-124.211	0/0:136:135,1:135:4852:1:36:0,-37.3418,-433.233	0/1:26:12,14:12:428:14:504:-37.8713,0,-31.032	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:78:77,1:77:2768:1:36:0,-19.8821,-245.762	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.384	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:78:77,1:77:2764:1:32:0,-20.281,-245.802	0/0:75:74,1:74:2652:1:36:0,-18.979,-235.328	0/0:61:60,1:60:2152:1:36:0,-14.7646,-190.349	0/0:167:167,0:167:5984:0:0:0,-50.272,-538.665	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:64:19,45:19:684:45:1616:-126.464,0,-42.6244	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:31:22,9:22:792:9:324:-20.1739,0,-62.2737	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:166:92,74:92:3289:74:2636:-187.517,0,-246.257	0/1:132:65,67:65:2332:67:2400:-176.521,0,-170.404	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:80:77,3:77:2764:3:104:0,-14.3796,-239.298	0/1:56:20,36:20:720:36:1292:-99.7261,0,-48.2711	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:186:185,1:185:6652:1:36:0,-52.3933,-595.155	0/1:147:73,74:73:2624:74:2660:-195.394,0,-192.155	0/1:86:51,35:51:1836:35:1245:-86.4657,0,-139.632	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:78:42,36:42:1508:36:1275:-91.5719,0,-112.534	0/1:56:33,23:33:1184:23:819:-57.1739,0,-90.0106	0/1:63:31,32:31:1112:32:1140:-83.9443,0,-81.4265	0/1:71:44,27:44:1580:27:968:-66.0642,0,-121.118	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:60:27,33:27:968:33:1156:-86.2818,0,-69.3756	0/1:76:34,42:34:1216:42:1504:-112.776,0,-86.8683	0/1:124:68,56:68:2444:56:2004:-143.306,0,-182.887	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:123:123,0:123:4405:0:0:0,-37.0267,-396.62	0/0:78:77,1:77:2768:1:36:0,-19.8821,-245.762	0/1:15:4,11:4:144:11:392:-31.1046,0,-8.79817	0/1:75:41,34:41:1472:34:1220:-87.5296,0,-110.199	0/1:40:31,9:31:1116:9:320:-17.1012,0,-88.7105	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:57:35,22:35:1256:22:772:-52.6426,0,-96.1866	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:138:136,2:136:4892:2:72:0,-34.7054,-433.593	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:124:73,51:73:2607:51:1828:-127.473,0,-197.55	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:70:69,1:69:2437:1:36:0,-17.4738,-215.984	0/1:66:12,54:12:432:54:1935:-154.558,0,-19.3532	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:104:104,0:104:3740:0:0:0,-31.3071,-336.799	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:59:29,30:29:1031:30:1061:-78.0396,0,-75.3419	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.69	0/0:121:121,0:121:4313:0:0:0,-36.4246,-388.346	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:66:65,1:65:2336:1:36:0,-16.2697,-206.901	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:73:72,1:72:2588:1:36:0,-18.3769,-229.57	0/1:92:42,50:42:1504:50:1787:-133.417,0,-107.96	0/0:104:104,0:104:3716:0:0:0,-31.3071,-334.642	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.87	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.711	0/1:85:35,50:35:1256:50:1770:-133.995,0,-87.7577	0/0:137:135,2:135:4847:2:72:0,-34.4044,-429.545	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:81:38,43:38:1360:43:1530:-113.609,0,-98.3172	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:86:41,45:41:1472:45:1620:-120.201,0,-106.888	0/1:111:50,61:50:1800:61:2179:-162.96,0,-128.868	0/1:69:25,44:25:900:44:1572:-121.001,0,-60.5499	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:109:109,0:109:3903:0:0:0,-32.8123,-351.463
chr08	30067827	.	C	T	16145	PASS	AB=0.539352;ABP=26.2531;AC=35;AF=0.190217;AN=184;AO=947;CIGAR=1X;DP=4844;DPB=4844;DPRA=0.910981;EPP=1973.45;EPPR=7985.58;GTI=1;LEN=1;MEANALT=1.07692;MQM=59.9926;MQMR=59.9764;NS=92;NUMALT=1;ODDS=2.1989;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33433;QR=138637;RO=3893;RPL=10;RPP=1973.45;RPPR=7985.58;RPR=937;RUN=1;SAF=947;SAP=2059.39;SAR=0;SRF=3893;SRP=8456.55;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:41:22,19:22:788:19:671:-48.3736,0,-58.9026	0/0:121:120,0:120:4291:0:0:0,-36.1236,-386.007	0/1:20:7,13:7:239:13:460:-35.7148,0,-15.8221	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/0:112:112,0:112:3981:0:0:0,-33.7154,-358.481	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.249	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:48:47,1:47:1650:1:36:0,-10.8512,-145.188	0/0:46:46,0:46:1631:0:0:0,-13.8474,-145.888	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.803	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/0:60:60,0:60:2134:0:0:0,-18.0618,-192.327	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:58:58,0:58:2051:0:0:0,-17.4597,-184.703	0/0:107:107,0:107:3822:0:0:0,-32.2102,-344.176	0/1:67:18,49:18:640:49:1726:-135.454,0,-37.7603	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:36:17,19:17:600:19:659:-48.7952,0,-43.4921	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/1:139:52,86:52:1856:86:3041:-232.167,0,-125.565	0/1:66:38,28:38:1341:28:1004:-70.8079,0,-101.12	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/0:103:103,0:103:3629:0:0:0,-31.0061,-326.816	0/0:70:70,0:70:2487:0:0:0,-21.0721,-224.083	0/1:57:25,32:25:892:32:1144:-86.1093,0,-63.441	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	.:.:.:.:.:.:.:.	0/0:147:147,0:147:5244:0:0:0,-44.2514,-472.1	0/1:101:53,47:53:1875:47:1668:-120.091,0,-138.713	0/1:44:21,23:21:743:23:815:-60.4254,0,-53.948	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:62:31,31:31:1080:31:1100:-80.6464,0,-78.8419	0/1:24:14,10:14:500:10:356:-25.1565,0,-38.1115	0/1:53:22,31:22:784:31:1078:-81.3706,0,-54.9293	0/1:45:27,18:27:960:18:627:-43.208,0,-73.1699	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/1:50:17,33:17:612:33:1147:-88.4835,0,-40.3619	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:93:48,44:48:1728:44:1576:-114.077,0,-127.746	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.932	0/0:52:52,0:52:1842:0:0:0,-15.6536,-166.059	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:59:34,25:34:1208:25:868:-60.6749,0,-91.2653	0/1:35:17,18:17:604:18:640:-47.3933,0,-44.1546	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/1:34:15,19:15:540:19:663:-49.7584,0,-38.7015	0/1:24:15,9:15:528:9:307:-20.7355,0,-40.6266	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:88:88,0:88:3151:0:0:0,-26.4906,-283.814	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:132:66,66:66:2368:66:2348:-171.844,0,-173.642	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:53:51,2:51:1824:2:72:0,-9.11787,-157.604	0/1:65:19,46:19:671:46:1607:-125.35,0,-41.1488	0/0:29:27,2:27:959:2:72:0,-1.89315,-79.7887	0/0:33:32,1:32:1139:1:36:0,-6.33571,-99.2201	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:57:57,0:57:2002:0:0:0,-17.1587,-180.441	0/1:59:37,22:37:1319:22:784:-53.1231,0,-101.25	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:35:35,0:35:1226:0:0:0,-10.536,-110.64	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:32:32,0:32:1128:0:0:0,-9.63296,-101.828	0/1:49:18,31:18:648:31:1082:-82.9367,0,-43.9014	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.995	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:82:38,44:38:1355:44:1537:-113.935,0,-97.5606	0/0:118:118,0:118:4184:0:0:0,-35.5215,-376.743	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:58:24,34:24:852:34:1199:-90.7551,0,-59.5406	0/0:46:44,2:44:1559:2:64:0,-7.76869,-134.522	0/1:35:12,23:12:424:23:815:-63.1347,0,-27.9604	0/1:61:27,34:27:956:34:1204:-90.303,0,-67.9929	0/1:62:18,44:18:648:44:1555:-121.577,0,-39.988	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/0:73:73,0:73:2591:0:0:0,-21.9752,-233.439
chr08	30099368	.	T	G	133111	PASS	AB=0.465048;ABP=39.2889;AC=153;AF=0.81383;AN=188;AO=6529;CIGAR=1X;DP=8388;DPB=8388;DPRA=30.0538;EPP=14171.9;EPPR=4035.43;GTI=4;LEN=1;MEANALT=1.02151;MQM=59.5523;MQMR=48.1373;NS=94;NUMALT=1;ODDS=2.32473;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226067;QR=66302;RO=1857;RPL=1;RPP=14171.9;RPPR=4035.43;RPR=6528;RUN=1;SAF=0;SAP=14180.6;SAR=6529;SRF=0;SRP=4035.43;SRR=1857;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:92:0,92:0:0:92:3187:-286.413,-27.6948,0	1/1:63:0,63:0:0:63:2247:-202.474,-18.9649,0	0/1:178:67,111:67:2379:111:3814:-289.802,0,-157.424	1/1:122:0,122:0:0:122:4190:-377.262,-36.7257,0	0/1:72:42,30:42:1504:30:1049:-73.0303,0,-112.46	0/1:54:23,31:23:828:31:1094:-82.1128,0,-57.6956	1/1:98:0,98:0:0:98:3410:-307.105,-29.5009,0	1/1:84:1,83:1:36:83:2926:-259.891,-21.6882,0	1/1:124:0,124:0:0:124:4315:-388.451,-37.3277,0	1/1:74:0,74:0:0:74:2535:-228.388,-22.2762,0	1/1:35:0,35:0:0:35:1235:-111.444,-10.5361,0	1/1:110:0,110:0:0:110:3798:-341.896,-33.1133,0	1/1:77:0,77:0:0:77:2665:-239.995,-23.1793,0	1/1:59:0,59:0:0:59:2008:-180.967,-17.7608,0	1/1:66:0,66:0:0:66:2267:-204.286,-19.868,0	1/1:68:0,68:0:0:68:2327:-209.684,-20.47,0	1/1:22:0,22:0:0:22:742:-67.0406,-6.62266,0	1/1:27:0,27:0:0:27:928:-83.7938,-8.12781,0	1/1:17:0,17:0:0:17:559:-50.6177,-5.11751,0	1/1:157:0,157:0:0:157:5443:-489.775,-47.2617,0	1/1:134:0,134:0:0:134:4654:-418.791,-40.338,0	0/1:176:123,53:123:4382:53:1842:-113.075,0,-340.167	1/1:124:2,122:2:72:122:4236:-374.449,-30.5055,0	0/1:82:34,48:34:1212:48:1686:-127.326,0,-83.5228	1/1:120:0,120:0:0:120:4097:-368.861,-36.1236,0	0/1:228:126,102:126:4423:102:3514:-247.819,0,-328.286	0/1:267:150,117:150:5372:117:4055:-284.757,0,-395.737	1/1:37:0,37:0:0:37:1295:-116.85,-11.1381,0	1/1:191:1,190:1:36:190:6628:-592.972,-53.8985,0	1/1:121:8,113:8:288:113:3943:-328.939,-10.3294,0	0/1:109:47,62:47:1684:62:2159:-161.738,0,-118.314	0/1:12:2,10:2:72:10:356:-28.755,0,-3.17716	1/1:21:1,20:1:36:20:707:-60.3811,-2.7482,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.96413	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:14:0,14:0:0:14:486:-44.068,-4.21442,0	1/1:171:1,170:1:36:170:5851:-523.049,-47.9175,0	0/1:134:67,67:67:2374:67:2326:-169.213,0,-171.96	0/1:41:26,15:26:912:15:528:-35.5091,0,-68.3838	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:75:41,34:41:1472:34:1191:-84.9155,0,-108.718	0/1:44:31,13:31:1112:13:463:-28.7507,0,-86.2558	0/1:254:141,113:141:5044:113:3918:-276.004,0,-372.648	0/1:32:16,16:16:567:16:534:-38.7416,0,-41.0042	1/1:49:1,48:1:36:48:1664:-146.295,-11.1919,0	0/1:103:52,51:52:1864:51:1767:-128.281,0,-135.855	0/1:100:49,51:49:1751:51:1739:-126.681,0,-125.838	0/1:238:122,116:122:4355:116:4057:-293.623,0,-317.898	1/1:102:1,101:1:36:101:3439:-306.123,-27.122,0	1/1:78:0,78:0:0:78:2715:-244.59,-23.4803,0	1/1:213:0,212:0:0:212:7362:-661.956,-63.8184,0	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.5173	0/1:136:94,42:94:3368:42:1473:-91.9111,0,-258.34	0/1:58:18,40:18:640:40:1387:-107.654,0,-39.6982	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.6159	0/1:140:57,83:57:2036:83:2889:-218.098,0,-139.998	1/1:134:0,134:0:0:134:4632:-417.03,-40.338,0	1/1:9:0,9:0:0:9:302:-27.5051,-2.70927,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:62:0,62:0:0:62:2121:-191.151,-18.6639,0	1/1:99:0,99:0:0:99:3416:-307.649,-29.802,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:149:77,72:77:2764:72:2532:-183.276,0,-203.057	1/1:140:1,139:1:36:139:4865:-434.253,-38.5612,0	1/1:59:0,59:0:0:59:2026:-182.603,-17.7608,0	1/1:47:0,47:0:0:47:1644:-148.237,-14.1484,0	1/1:153:4,149:4:144:149:5203:-455.083,-32.8003,0	0/1:154:94,60:94:3364:60:2081:-141.196,0,-255.181	1/1:26:1,25:1:36:25:845:-72.7782,-4.25335,0	1/1:95:0,95:0:0:95:3255:-293.005,-28.5979,0	1/1:38:0,38:0:0:38:1337:-120.627,-11.4391,0	1/1:12:0,12:0:0:12:415:-37.6803,-3.61236,0	1/1:231:0,231:0:0:231:7971:-717.32,-69.5379,0	0/1:87:36,51:36:1292:51:1799:-134.84,0,-88.7355	1/1:139:0,139:0:0:139:4777:-430.017,-41.8432,0	1/1:122:0,122:0:0:122:4289:-386.173,-36.7257,0	1/1:137:0,137:0:0:137:4753:-427.885,-41.2411,0	1/1:15:0,15:0:0:15:521:-47.2163,-4.51545,0	0/1:16:12,4:12:432:4:136:-7.75906,0,-33.9383	1/1:65:1,64:1:36:64:2205:-195.166,-16.0308,0	0/1:127:69,58:69:2468:58:2007:-142.468,0,-180.614	1/1:156:2,154:2:72:154:5317:-471.557,-40.1529,0	1/1:52:0,52:0:0:52:1807:-162.903,-15.6536,0	1/1:81:0,81:0:0:81:2762:-248.721,-24.3834,0	0/1:43:18,25:18:648:25:837:-62.685,0,-45.1486	1/1:99:1,98:1:36:98:3371:-298.768,-26.2434,0	1/1:20:0,20:0:0:20:672:-60.7872,-6.0206,0	0/1:81:45,36:45:1616:36:1238:-87.3345,0,-119.724	1/1:56:0,56:0:0:56:1920:-173.072,-16.8577,0	0/1:60:39,20:39:1391:20:672:-42.759,0,-106.162	0/1:87:57,30:57:2044:30:1006:-64.6481,0,-155.563	0/1:64:42,22:42:1496:22:766:-49.9925,0,-114.224	1/1:130:0,130:0:0:130:4413:-397.154,-39.1339,0	1/1:105:0,105:0:0:105:3706:-333.736,-31.6082,0
chr08	30099396	.	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chr08	30099423	.	T	C	31099.2	PASS	AB=0.529765;ABP=29.8983;AC=35;AF=0.18617;AN=188;AO=1872;CIGAR=1X;DP=8590;DPB=8590;DPRA=1.28031;EPP=4068.01;EPPR=14486.7;GTI=6;LEN=1;MEANALT=1.28571;MQM=47.9941;MQMR=59.4955;NS=94;NUMALT=1;ODDS=2.02421;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66849;QR=238552;RO=6670;RPL=1872;RPP=4068.01;RPPR=14486.7;RPR=0;RUN=1;SAF=0;SAP=4068.01;SAR=1872;SRF=0;SRP=14486.7;SRR=6670;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.07	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.121	0/1:179:111,68:111:3964:68:2436:-162.12,0,-302.603	0/0:124:123,0:123:4400:0:0:0,-37.0267,-395.655	0/1:74:30,44:30:1080:44:1568:-117.61,0,-75.2095	0/1:53:30,23:30:1080:23:828:-57.9966,0,-81.156	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.15	0/0:87:86,0:86:3065:0:0:0,-25.8886,-275.59	0/0:124:123,0:123:4416:0:0:0,-37.0267,-397.199	0/0:74:74,0:74:2664:0:0:0,-22.2762,-239.296	0/0:36:35,0:35:1256:0:0:0,-10.536,-112.971	0/0:113:111,0:111:3979:0:0:0,-33.4143,-357.801	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.157	0/0:60:60,0:60:2156:0:0:0,-18.0618,-193.982	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.036	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.65	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.0805	0/0:28:27,0:27:957:0:0:0,-8.12781,-85.9331	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.123	0/0:160:158,0:158:5680:0:0:0,-47.5627,-510.954	0/0:134:134,0:134:4789:0:0:0,-40.338,-430.426	0/1:180:54,126:54:1936:126:4489:-347.527,0,-120.331	0/0:125:124,1:124:4422:1:36:0,-34.0457,-394.27	0/1:88:52,35:52:1872:35:1240:-84.1264,0,-142.198	0/0:125:125,0:125:4465:0:0:0,-37.6287,-401.964	0/1:232:103,129:103:3649:129:4636:-345.504,0,-258.76	0/1:276:125,150:125:4492:150:5368:-392.664,0,-320.921	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:200:198,0:198:7082:0:0:0,-59.6039,-636.966	0/0:127:120,7:120:4289:7:252:0,-15.3744,-363.286	0/1:108:61,47:61:2196:47:1688:-118.967,0,-165.356	0/1:13:11,2:11:381:2:72:-2.87613,0,-30.6934	0/0:23:22,1:22:784:1:36:0,-3.35026,-67.3105	1/1:3:0,3:0:0:3:108:-9.96413,-0.90309,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:171:168,0:168:6028:0:0:0,-50.573,-542.052	0/1:144:75,69:75:2696:69:2461:-176.518,0,-199.349	0/1:41:14,27:14:504:27:944:-71.2107,0,-33.3559	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:74:34,40:34:1224:40:1432:-105.695,0,-88.1893	0/1:44:10,31:10:345:31:1112:-86.8073,0,-18.6684	0/1:255:115,139:115:4074:139:4966:-365.739,0,-289.519	0/1:33:16,16:16:576:16:568:-40.9371,0,-42.1822	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.254	0/1:101:51,50:51:1798:50:1777:-128.293,0,-131.668	0/1:101:52,48:52:1872:48:1720:-122.739,0,-138.244	0/1:247:118,129:118:4213:129:4613:-335.817,0,-304.923	0/0:104:103,1:103:3704:1:36:0,-27.7241,-329.939	0/0:79:78,0:78:2804:0:0:0,-23.4803,-252.231	0/0:219:219,0:219:7864:0:0:0,-65.9256,-707.219	0/1:10:4,6:4:144:6:212:-16.1599,0,-10.3033	0/1:136:43,92:43:1548:92:3296:-252.478,0,-98.5918	0/1:60:43,17:43:1540:17:589:-34.3629,0,-120.71	0/1:8:4,4:4:140:4:144:-10.7586,0,-10.5363	0/1:143:83,60:83:2961:60:2131:-147.15,0,-223.378	0/0:142:142,0:142:5108:0:0:0,-42.7463,-459.84	0/0:10:8,0:8:288:0:0:0,-2.40824,-25.9076	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:64:64,0:64:2258:0:0:0,-19.2659,-203.477	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.587	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/1:151:76,75:76:2724:75:2684:-193.485,0,-199.948	0/0:147:145,1:145:5200:1:36:0,-40.7264,-464.227	0/0:61:61,0:61:2150:0:0:0,-18.3628,-193.763	0/0:49:48,0:48:1720:0:0:0,-14.4494,-154.718	0/0:156:152,4:152:5436:4:144:0,-33.7034,-476.036	0/1:163:63,99:63:2264:99:3510:-263.849,0,-154.922	0/0:26:25,1:25:900:1:36:0,-4.25335,-77.7338	0/0:98:98,0:98:3497:0:0:0,-29.5009,-314.24	0/0:40:38,0:38:1368:0:0:0,-11.4391,-123.058	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:232:232,0:232:8296:0:0:0,-69.839,-746.43	0/1:87:51,36:51:1798:36:1288:-88.3305,0,-135.487	0/0:142:142,0:142:5081:0:0:0,-42.7463,-457.33	0/0:121:121,0:121:4337:0:0:0,-36.4246,-390.48	0/0:135:135,0:135:4768:0:0:0,-40.639,-428.883	0/0:15:12,0:12:432:0:0:0,-3.61236,-38.8614	0/1:16:3,13:3:108:13:468:-37.1411,0,-5.25869	0/0:68:67,0:67:2389:0:0:0,-20.169,-214.818	0/1:127:59,68:59:2112:68:2437:-178.477,0,-151.176	0/0:162:160,2:160:5667:2:72:0,-41.9591,-502.974	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.026	0/0:85:84,0:84:3020:0:0:0,-25.2865,-271.481	0/1:47:28,19:28:1000:19:669:-46.1152,0,-76.1588	0/0:106:105,0:105:3772:0:0:0,-31.6081,-337.801	0/0:23:22,0:22:784:0:0:0,-6.62266,-70.5209	0/1:83:36,45:36:1292:45:1603:-118.284,0,-91.853	0/0:63:60,0:60:2137:0:0:0,-18.0618,-192.237	0/1:57:20,36:20:712:36:1288:-97.7919,0,-47.1889	0/1:93:31,61:31:1097:61:2168:-164.819,0,-70.9424	0/1:70:23,47:23:828:47:1688:-128.697,0,-53.772	0/0:127:126,0:126:4516:0:0:0,-37.9298,-405.993	0/0:110:108,0:108:3869:0:0:0,-32.5112,-348.026
chr08	30200440	.	G	C	31200.2	PASS	AB=0.532349;ABP=33.7772;AC=33;AF=0.175532;AN=188;AO=1826;CIGAR=1X;DP=9335;DPB=9335;DPRA=1.27821;EPP=3959.44;EPPR=16126.6;GTI=3;LEN=1;MEANALT=1.125;MQM=59.9918;MQMR=59.9943;NS=94;NUMALT=1;ODDS=0.781249;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65152;QR=267457;RO=7501;RPL=1;RPP=3959.44;RPPR=16126.6;RPR=1825;RUN=1;SAF=1826;SAP=3968.12;SAR=0;SRF=7501;SRP=16291.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:108:108,0:108:3819:0:0:0,-32.5112,-343.906	0/0:77:77,0:77:2757:0:0:0,-23.1793,-248.37	0/1:182:91,90:91:3253:90:3240:-236.974,0,-238.143	0/0:302:302,0:302:10712:0:0:0,-90.9111,-963.987	0/1:60:43,17:43:1536:17:608:-36.9902,0,-120.471	0/1:20:6,14:6:216:14:500:-39.3156,0,-13.7699	0/0:65:65,0:65:2298:0:0:0,-19.5669,-207.078	0/0:155:154,1:154:5482:1:26:0,-44.0598,-490.907	0/0:126:126,0:126:4513:0:0:0,-37.9298,-406.336	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:126:126,0:126:4505:0:0:0,-37.9298,-405.617	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:113:113,0:113:4013:0:0:0,-34.0164,-361.358	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.346	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3978	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4891	0/0:197:197,0:197:6977:0:0:0,-59.3029,-627.995	0/0:159:158,0:158:5611:0:0:0,-47.5627,-504.901	0/1:84:18,66:18:648:66:2354:-186.83,0,-33.3654	0/0:139:136,3:136:4869:3:104:0,-32.1404,-428.431	0/1:87:36,51:36:1292:51:1828:-138.611,0,-90.3942	0/0:128:128,0:128:4569:0:0:0,-38.5318,-411.375	0/1:205:97,108:97:3431:108:3857:-285.615,0,-247.29	0/1:295:143,152:143:5086:152:5415:-398.677,0,-369.08	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/0:274:274,0:274:9769:0:0:0,-82.4822,-879.145	0/0:120:120,0:120:4277:0:0:0,-36.1236,-385.108	0/1:132:63,69:63:2249:69:2449:-180.928,0,-162.935	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/0:223:223,0:223:7986:0:0:0,-67.1297,-718.758	0/1:141:66,75:66:2353:75:2678:-198.82,0,-169.582	0/1:49:24,25:24:860:25:889:-65.5776,0,-62.9714	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:108:54,53:54:1932:53:1895:-138.257,0,-141.587	0/1:46:28,18:28:1000:18:644:-44.4432,0,-76.468	0/1:205:102,103:102:3664:103:3692:-270.771,0,-268.251	0/1:65:32,33:32:1144:33:1188:-87.6616,0,-83.7026	0/0:64:63,0:63:2221:0:0:0,-18.9649,-199.791	0/1:121:56,65:56:2008:65:2316:-172.276,0,-144.569	0/1:115:64,51:64:2284:51:1836:-130.902,0,-171.204	0/1:210:86,123:86:3034:123:4390:-331.999,0,-210.015	0/0:103:103,0:103:3681:0:0:0,-31.0061,-331.492	0/0:127:125,2:125:4475:2:57:0,-32.8175,-397.506	0/0:138:138,0:138:4896:0:0:0,-41.5421,-440.789	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	0/1:128:68,60:68:2425:60:2156:-155.775,0,-179.972	0/1:42:27,15:27:942:15:540:-36.2933,0,-72.4466	0/1:10:7,3:7:252:3:104:-6.69251,0,-20.0187	0/1:202:103,98:103:3657:98:3472:-251.826,0,-268.465	0/0:93:93,0:93:3310:0:0:0,-27.9958,-298.116	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/0:108:106,2:106:3797:2:72:0,-25.6745,-335.089	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:206:73,133:73:2609:133:4746:-365.287,0,-173.044	0/0:159:159,0:159:5667:0:0:0,-47.8638,-510.147	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/0:117:116,1:116:4081:1:32:0,-32.0212,-364.274	0/0:161:161,0:161:5749:0:0:0,-48.4658,-517.526	0/1:123:30,93:30:1065:93:3316:-261.631,0,-59.1331	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.3671	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:144:143,0:143:5132:0:0:0,-43.0473,-461.661	0/1:109:58,51:58:2056:51:1822:-131.449,0,-152.499	0/0:136:136,0:136:4816:0:0:0,-40.9401,-433.593	0/0:240:239,1:239:8545:1:36:0,-68.6489,-765.447	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.892	0/0:135:133,2:133:4737:2:72:0,-33.8023,-419.65	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.753	0/1:143:79,63:79:2807:63:2217:-156.686,0,-209.762	0/0:170:170,0:170:6035:0:0:0,-51.1751,-543.255	0/0:83:83,0:83:2958:0:0:0,-24.9855,-266.45	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.438	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:141:141,0:141:5064:0:0:0,-42.4452,-455.903	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:61:27,34:27:968:34:1224:-92.1042,0,-69.0745	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:41:25,16:25:900:16:563:-38.6569,0,-68.9788	0/1:97:43,54:43:1548:54:1923:-144.146,0,-110.413	0/1:80:24,56:24:845:56:1991:-155.382,0,-52.2847	0/0:122:121,1:121:4318:1:36:0,-33.1274,-385.195	0/0:120:120,0:120:4285:0:0:0,-36.1236,-385.827
chr08	30200491	.	C	T	171428	PASS	AB=0.487479;ABP=7.08861;AC=154;AF=0.819149;AN=188;AO=7967;CIGAR=1X;DP=9529;DPB=9529;DPRA=0;EPP=17303.1;EPPR=3386.16;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.942;MQMR=59.9506;NS=94;NUMALT=1;ODDS=7.07634;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281457;QR=54531;RO=1558;RPL=1;RPP=17294.4;RPPR=3386.16;RPR=7966;RUN=1;SAF=1;SAP=17294.4;SAR=7966;SRF=0;SRP=3386.16;SRR=1558;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1052:-94.9905,-9.0309,0	1/1:65:0,65:0:0:65:2279:-205.37,-19.567,0	0/1:102:49,52:49:1715:52:1830:-134.216,0,-123.871	1/1:179:1,178:1:36:178:6295:-563.044,-50.2861,0	0/1:28:11,16:11:383:16:568:-42.9645,0,-26.3166	0/1:32:10,22:10:351:22:774:-60.3482,0,-22.2937	1/1:75:0,75:0:0:75:2649:-238.632,-22.5773,0	1/1:291:0,291:0:0:291:10313:-928.092,-87.5997,0	1/1:76:0,76:0:0:76:2678:-241.257,-22.8783,0	1/1:75:0,75:0:0:75:2660:-239.643,-22.5773,0	1/1:121:0,121:0:0:121:4293:-386.549,-36.4246,0	1/1:111:0,111:0:0:111:3930:-353.893,-33.4143,0	1/1:107:0,107:0:0:107:3823:-344.267,-32.2102,0	1/1:151:0,151:0:0:151:5315:-478.486,-45.4555,0	1/1:107:0,107:0:0:107:3773:-339.768,-32.2102,0	1/1:85:0,85:0:0:85:3034:-273.285,-25.5876,0	1/1:111:0,111:0:0:111:3930:-353.892,-33.4143,0	1/1:126:0,126:0:0:126:4484:-403.727,-37.9298,0	1/1:60:0,60:0:0:60:2100:-189.268,-18.0618,0	1/1:393:2,391:2:68:391:13740:-1229.95,-111.847,0	1/1:130:0,130:0:0:130:4564:-410.932,-39.1339,0	0/1:72:49,23:49:1705:23:820:-52.4484,0,-131.281	1/1:63:1,62:1:36:62:2197:-194.397,-15.3666,0	0/1:86:28,58:28:992:58:2036:-157.622,0,-63.7058	1/1:53:0,53:0:0:53:1883:-169.748,-15.9546,0	0/1:267:110,157:110:3891:157:5543:-418.62,0,-270.01	0/1:174:105,69:105:3684:69:2456:-168.914,0,-279.385	1/1:52:0,52:0:0:52:1842:-166.059,-15.6536,0	1/1:136:0,136:0:0:136:4798:-431.977,-40.9401,0	1/1:98:3,95:3:100:95:3355:-292.839,-20.1705,0	0/1:101:53,48:53:1850:48:1701:-122.97,0,-136.375	0/1:14:7,7:7:248:7:248:-18.4498,0,-18.4498	1/1:14:0,14:0:0:14:481:-43.6151,-4.21442,0	0/1:10:7,3:7:252:3:104:-6.69251,0,-20.0187	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:304:0,304:0:0:304:10722:-964.901,-91.5131,0	0/1:187:100,87:100:3470:87:3063:-219.608,0,-256.222	0/1:93:41,52:41:1422:52:1835:-137.427,0,-100.249	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:95:50,45:50:1747:45:1596:-115.319,0,-128.913	0/1:53:20,33:20:688:33:1171:-89.7421,0,-46.2829	0/1:95:55,40:55:1922:40:1407:-98.3286,0,-144.658	0/1:119:58,61:58:1976:61:2183:-160.913,0,-142.288	1/1:100:0,100:0:0:100:3516:-316.624,-30.103,0	0/1:78:40,38:40:1410:38:1351:-98.4093,0,-103.715	0/1:83:34,49:34:1207:49:1708:-128.999,0,-83.9498	0/1:111:52,59:52:1824:59:2062:-152.434,0,-131.024	1/1:104:0,104:0:0:104:3691:-332.395,-31.3071,0	1/1:151:0,151:0:0:151:5328:-479.623,-45.4555,0	1/1:98:0,98:0:0:98:3445:-310.266,-29.5009,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:81:45,36:45:1608:36:1284:-91.48,0,-120.627	0/1:56:24,32:24:817:32:1141:-86.1417,0,-56.9841	0/1:19:11,8:11:388:8:280:-19.8197,0,-29.5378	0/1:118:63,55:63:2187:55:1936:-138.995,0,-161.573	1/1:70:0,70:0:0:70:2441:-219.944,-21.0721,0	1/1:4:0,4:0:0:4:144:-13.3127,-1.20412,0	1/1:24:0,24:0:0:24:847:-76.5487,-7.22472,0	1/1:94:2,92:2:63:92:3242:-286.021,-22.3137,0	1/1:166:2,164:2:72:164:5791:-514.472,-43.1343,0	0/1:7:1,6:1:36:6:203:-16.494,0,-1.49106	0/1:177:101,76:101:3561:76:2685:-188.613,0,-267.419	1/1:159:0,159:0:0:159:5670:-510.42,-47.8638,0	1/1:46:0,45:0:0:45:1573:-141.499,-13.5464,0	1/1:42:0,42:0:0:42:1445:-130.339,-12.6433,0	1/1:160:0,160:0:0:160:5625:-506.381,-48.1648,0	0/1:63:41,22:41:1459:22:766:-50.2936,0,-112.64	1/1:69:3,66:3:108:66:2364:-202.943,-10.6959,0	1/1:56:1,55:1:36:55:1946:-171.816,-13.2594,0	1/1:164:0,163:0:0:163:5794:-521.162,-49.0679,0	1/1:30:0,30:0:0:30:1067:-96.2503,-9.0309,0	1/1:74:0,74:0:0:74:2589:-233.256,-22.2762,0	0/1:49:29,20:29:1025:20:703:-48.843,0,-77.8102	1/1:238:0,238:0:0:238:8377:-753.447,-71.6451,0	1/1:151:0,151:0:0:151:5369:-483.341,-45.4555,0	1/1:95:0,95:0:0:95:3383:-304.651,-28.5979,0	1/1:122:3,119:3:108:119:4243:-371.975,-26.6505,0	0/1:14:7,7:7:252:7:239:-17.6283,0,-18.8145	1/1:59:2,57:2:72:57:2025:-175.681,-10.924,0	0/1:98:52,46:52:1851:46:1635:-117.934,0,-137.368	1/1:206:0,206:0:0:206:7244:-652.005,-62.0122,0	1/1:132:1,131:1:36:131:4612:-412.192,-36.6814,0	1/1:121:0,121:0:0:121:4258:-383.4,-36.4246,0	1/1:149:0,149:0:0:149:5300:-477.136,-44.8535,0	1/1:227:2,225:2:72:225:7940:-707.796,-61.4971,0	1/1:41:0,41:0:0:41:1460:-131.664,-12.3422,0	0/1:109:57,52:57:1987:52:1843:-133.337,0,-146.289	1/1:112:1,111:1:32:111:3945:-352.035,-30.516,0	0/1:112:60,52:60:2072:52:1838:-131.984,0,-153.034	0/1:161:76,85:76:2643:85:3003:-221.259,0,-189.652	0/1:120:80,40:80:2781:40:1423:-92.2408,0,-214.408	1/1:85:0,85:0:0:85:2984:-268.784,-25.5876,0	1/1:152:1,151:1:36:151:5326:-475.882,-42.1583,0
chr08	30204944	.	TTCGA	CTCGG,CTCGA	296142	PASS	AB=0.421316,0.574392;ABP=228.545,204.612;AC=155,33;AF=0.824468,0.175532;AN=188;AO=8989,2430;CIGAR=1X3M1X,1X4M;DP=11451;DPB=12026;DPRA=0,1.2637;EPP=19522.4,5279.69;EPPR=16.0391;GTI=3;LEN=5,1;MEANALT=1.75532,2.34783;MQM=59.9561,59.9988;MQMR=60;NS=94;NUMALT=2;ODDS=1.54209;PAIRED=0,0;PAIREDR=0;PAO=1334,1327;PQA=46707,46491;PQR=0;PRO=214;QA=304520,86022;QR=200;RO=6;RPL=2885,906;RPP=2506.15,344.301;RPPR=8.80089;RPR=6104,1524;RUN=1,1;SAF=2885,906;SAP=2506.15,344.301;SAR=6104,1524;SRF=1;SRP=8.80089;SRR=5;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:416,0:-34.3706,-3.91339,0,-34.3706,-3.91339,-34.3706	1/1:100:0,99,0:0:0:99,0:3337,0:-297.112,-29.802,0,-297.112,-29.802,-297.112	1/2:117:0,49,67:0:0:49,67:1626,2358:-320.701,-189.203,-174.453,-128.795,0,-108.626	1/1:230:0,230,0:0:0:230,0:7884,0:-707.471,-69.2369,0,-707.471,-69.2369,-707.471	1/2:49:0,15,34:0:0:15,34:483,1212:-137.84,-98.9074,-94.392,-39.0178,0,-28.7828	1/2:34:0,9,25:0:0:9,25:311,881:-96.0638,-70.8092,-68.0999,-24.439,0,-16.9133	1/1:200:0,199,0:0:0:199,0:6828,0:-613.95,-59.905,0,-613.95,-59.905,-613.95	1/1:106:0,105,1:0:0:105,1:3501,36:-310.94,-31.6082,0,-308.003,-32.7579,-307.702	1/1:102:0,101,0:0:0:101,0:3307,0:-292.263,-30.404,0,-292.263,-30.404,-292.263	1/1:163:0,162,1:0:0:162,1:5485,36:-493.371,-48.7669,0,-490.434,-45.8594,-490.133	1/1:89:0,89,0:0:0:89,0:3048,0:-274.082,-26.7917,0,-274.082,-26.7917,-274.082	1/1:87:0,87,0:0:0:87,0:2801,0:-246.158,-26.1896,0,-246.158,-26.1896,-246.158	1/1:87:0,87,0:0:0:87,0:2909,0:-257.882,-26.1896,0,-257.882,-26.1896,-257.882	1/1:76:0,75,1:0:0:75,1:2429,32:-218.722,-22.5773,0,-216.144,-19.9717,-215.843	1/1:133:0,133,0:0:0:133,0:4519,0:-406.302,-40.037,0,-406.302,-40.037,-406.302	1/1:61:0,60,1:0:0:60,1:2012,36:-181.214,-18.0618,0,-178.275,-15.0936,-177.974	1/1:82:0,82,0:0:0:82,0:2737,0:-244.024,-24.6845,0,-244.024,-24.6845,-244.024	1/1:78:1,76,1:1:36:76,1:2495,36:-220.362,-20.8117,0,-217.725,-20.8117,-220.362	1/1:49:0,49,0:0:0:49,0:1628,0:-144.369,-14.7505,0,-144.369,-14.7505,-144.369	1/1:185:0,184,1:0:0:184,1:6307,36:-567.239,-55.3895,0,-564.301,-52.603,-564	1/1:105:0,105,0:0:0:105,0:3559,0:-320.404,-31.6082,0,-320.404,-31.6082,-320.404	1/2:145:0,39,105:0:0:39,105:1337,3707:-410.459,-301.919,-290.179,-108.578,0,-76.9703	1/1:208:0,208,0:0:0:208,0:7029,0:-632.058,-62.6142,0,-632.058,-62.6142,-632.058	1/2:53:0,22,31:0:0:22,31:721,1111:-149.08,-90.8416,-84.219,-58.4459,0,-49.1139	1/1:66:0,66,0:0:0:66,0:2182,0:-196.403,-19.868,0,-196.403,-19.868,-196.403	1/2:474:0,216,256:0:0:216,256:7405,9108:-1343.09,-741.922,-676.9,-600.798,0,-523.735	1/2:222:0,68,154:0:0:68,154:2281,5444:-628.378,-443.625,-423.155,-184.95,0,-138.592	1/1:28:0,28,0:0:0:28,0:942,0:-84.9044,-8.42884,0,-84.9044,-8.42884,-84.9044	1/1:263:0,257,5:0:0:257,5:8908,180:-801.189,-77.3647,0,-786.502,-63.6304,-784.997	1/1:95:0,92,3:0:0:92,3:3056,104:-275.114,-27.6948,0,-266.659,-19.175,-265.756	1/2:172:0,71,101:0:0:71,101:2447,3606:-492.621,-293.865,-272.492,-198.633,0,-168.229	1/2:10:0,1,9:0:0:1,9:36,320:-29.3709,-26.4331,-26.1321,-3.29724,0,-0.587975	1/1:8:0,8,0:0:0:8,0:276,0:-25.0773,-2.40824,0,-25.0773,-2.40824,-25.0773	1/2:7:0,2,5:0:0:2,5:60,180:-19.5687,-14.8062,-14.2041,-4.9463,0,-3.44115	1/1:3:0,3,0:0:0:3,0:104,0:-9.42448,-0.90309,0,-9.42448,-0.90309,-9.42448	1/1:8:0,8,0:0:0:8,0:275,0:-23.7678,-2.40824,0,-23.7678,-2.40824,-23.7678	1/1:399:0,398,0:0:0:398,0:13427,0:-1206.34,-119.81,0,-1206.34,-119.81,-1206.34	1/2:158:2,71,84:2:62:71,84:2379,2986:-430.611,-238.546,-222.149,-187.858,0,-167.548	1/2:65:0,33,32:0:0:33,32:1085,1119:-174.856,-87.2479,-77.3139,-83.8753,0,-74.2423	1/1:1:0,1,0:0:0:1,0:31,0:-3.09945,-0.30103,0,-3.09945,-0.30103,-3.09945	1/2:181:0,93,88:0:0:93,88:3151,3131:-510.889,-255.392,-227.396,-255.69,0,-229.199	1/2:43:0,16,27:0:0:16,27:530,952:-120.628,-77.7514,-72.9349,-43.0662,0,-34.9384	1/2:170:0,60,110:0:0:60,110:2021,3884:-480.279,-316.516,-298.454,-163.974,0,-130.861	1/2:128:0,59,68:0:0:59,68:2002,2404:-357.514,-195.173,-177.412,-161.72,0,-141.25	1/1:113:0,112,0:0:0:112,0:3788,0:-340.432,-33.7154,0,-340.432,-33.7154,-340.432	1/2:268:1,153,114:1:36:153,114:5281,3969:-748.289,-319.551,-276.431,-425.851,0,-394.471	1/2:59:0,26,33:0:0:26,33:872,1157:-160.331,-89.7766,-81.9498,-66.2775,0,-56.3435	1/2:256:0,128,128:0:0:128,128:4338,4526:-720.176,-368.441,-329.909,-351.547,0,-313.015	1/1:178:0,178,0:0:0:178,0:6139,0:-551.56,-53.5833,0,-551.56,-53.5833,-551.56	1/1:185:0,185,0:0:0:185,0:6307,0:-566.68,-55.6906,0,-566.68,-55.6906,-566.68	1/1:228:0,226,0:0:0:226,0:7699,0:-692.454,-68.0328,0,-692.454,-68.0328,-692.454	1/2:4:0,3,1:0:0:3,1:99,36:-11.143,-3.29724,-2.39415,-8.21314,0,-7.91211	1/2:96:0,53,43:0:0:53,43:1796,1528:-266.649,-121.117,-105.163,-142.185,0,-129.241	1/2:120:0,51,69:0:0:51,69:1733,2458:-340.597,-200.05,-184.698,-140.249,0,-119.477	1/2:6:0,3,3:0:0:3,3:107,104:-17.4771,-8.75959,-7.8565,-9.03895,0,-8.13586	1/2:116:0,37,78:0:0:37,78:1231,2773:-325.806,-226.186,-215.048,-99.7836,0,-76.3033	1/1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chr08	30241999	.	CATTT	TATTT,TATTC	173568	PASS	AB=0.457686,0.535975;ABP=52.0759,38.4758;AC=153,33;AF=0.822581,0.177419;AN=186;AO=6177,1704;CIGAR=1X4M,1X3M1X;DP=7914;DPB=7916.2;DPRA=0,1.30102;EPP=13148.3,3314.43;EPPR=7.35324;GTI=2;LEN=1,5;MEANALT=1.76344,2.37209;MQM=59.9304,59.5751;MQMR=60;NS=93;NUMALT=2;ODDS=1.91948;PAIRED=0,0;PAIREDR=0;PAO=6,6;PQA=214,214;PQR=0;PRO=0;QA=220471,59100;QR=72;RO=2;RPL=6147,1658;RPP=13156.9,3314.43;RPPR=7.35324;RPR=30,46;RUN=1,1;SAF=6176,1704;SAP=13407.5,3703.2;SAR=1,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14,0:0:0:14,0:494,0:-44.7931,-4.21442,0,-44.7931,-4.21442,-44.7931	1/1:136:0,136,0:0:0:136,0:4874,0:-438.812,-40.9401,0,-438.812,-40.9401,-438.812	1/2:136:0,69,66:0:0:69,66:2480,2318:-391.103,-188.775,-168.004,-202.45,0,-182.582	1/1:224:0,224,0:0:0:224,0:7998,0:-719.758,-67.4307,0,-719.758,-67.4307,-719.758	1/2:76:0,21,55:0:0:21,55:752,1922:-217.869,-156.54,-150.218,-61.6846,0,-45.128	1/2:57:0,22,34:0:0:22,34:792,1187:-161.177,-96.5486,-89.9259,-64.6812,0,-54.4462	1/1:86:0,85,0:0:0:85,0:3051,0:-274.488,-25.5876,0,-274.488,-25.5876,-274.488	1/1:136:0,135,0:0:0:135,0:4774,0:-429.209,-40.6391,0,-429.209,-40.6391,-429.209	1/1:42:0,42,0:0:0:42,0:1489,0:-134.303,-12.6433,0,-134.303,-12.6433,-134.303	1/1:89:0,88,1:0:0:88,1:3137,35:-282.203,-26.4906,0,-279.356,-23.293,-279.055	1/1:42:0,42,0:0:0:42,0:1493,0:-134.663,-12.6433,0,-134.663,-12.6433,-134.663	1/1:46:0,46,0:0:0:46,0:1627,0:-146.718,-13.8474,0,-146.718,-13.8474,-146.718	1/1:38:0,38,0:0:0:38,0:1360,0:-122.701,-11.4391,0,-122.701,-11.4391,-122.701	1/1:59:0,59,0:0:0:59,0:2120,0:-191.064,-17.7608,0,-191.064,-17.7608,-191.064	1/1:49:0,48,0:0:0:48,0:1709,0:-153.793,-14.4494,0,-153.793,-14.4494,-153.793	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/1:54:0,54,0:0:0:54,0:1911,0:-172.262,-16.2556,0,-172.262,-16.2556,-172.262	1/1:44:0,42,1:0:0:42,1:1495,35:-134.541,-12.6433,0,-131.694,-9.74559,-131.393	1/1:28:0,28,0:0:0:28,0:996,0:-89.9549,-8.42884,0,-89.9549,-8.42884,-89.9549	1/1:226:0,226,0:0:0:226,0:8044,0:-723.919,-68.0328,0,-723.919,-68.0328,-723.919	1/1:117:0,117,0:0:0:117,0:4177,0:-376.111,-35.2205,0,-376.111,-35.2205,-376.111	1/2:116:0,40,75:0:0:40,75:1440,2611:-329.885,-212.384,-200.343,-117.584,0,-95.0071	1/1:39:0,39,0:0:0:39,0:1392,0:-125.579,-11.7402,0,-125.579,-11.7402,-125.579	1/2:78:0,48,30:0:0:48,30:1724,1032:-224.795,-84.1487,-69.6992,-140.996,0,-131.965	1/1:67:0,66,1:0:0:66,1:2372,35:-213.388,-19.868,0,-210.54,-16.6704,-210.239	1/2:315:0,168,146:0:0:168,146:5998,5043:-898.642,-409.66,-359.087,-489.036,0,-445.085	1/2:206:1,80,124:1:36:80,124:2864,4285:-578.472,-345.218,-324.073,-230.678,0,-196.288	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:254:0,253,0:0:0:253,0:9044,0:-813.571,-76.1606,0,-813.571,-76.1606,-813.571	1/1:147:0,144,3:0:0:144,3:5136,108:-462.023,-43.3483,0,-453.21,-34.1762,-452.307	1/2:138:0,63,70:0:0:63,70:2236,2447:-381.285,-199.098,-180.133,-182.221,0,-161.149	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:119:0,118,0:0:0:118,0:4235,0:-381.023,-35.5215,0,-381.023,-35.5215,-381.023	1/2:181:0,97,84:0:0:97,84:3466,2893:-517.829,-235.227,-206.028,-282.951,0,-257.665	1/2:59:0,19,39:0:0:19,39:671,1362:-165.508,-110.866,-105.146,-54.7187,0,-42.9786	.:.:.:.:.:.:.:.	1/2:177:0,74,103:0:0:74,103:2656,3560:-504.995,-288.34,-266.064,-216.948,0,-185.942	1/2:48:0,18,30:0:0:18,30:644,1021:-135.685,-83.1641,-77.7455,-52.8721,0,-43.8412	1/2:114:1,51,62:1:36:51,62:1832,2135:-319.514,-170.429,-158.014,-146.441,0,-130.715	1/2:59:0,27,32:0:0:27,32:959,1112:-168.894,-90.7476,-82.6198,-78.4976,0,-68.8646	1/1:38:0,38,0:0:0:38,0:1347,0:-121.47,-11.4391,0,-121.47,-11.4391,-121.47	1/2:88:0,38,50:0:0:38,50:1356,1720:-250.579,-140.03,-128.591,-110.901,0,-95.8493	1/2:161:0,79,81:0:0:79,81:2820,2814:-458.602,-228.698,-204.916,-229.897,0,-205.513	1/2:133:0,62,71:0:0:62,71:2215,2441:-379.167,-198.568,-179.904,-180.95,0,-159.577	1/1:91:0,91,0:0:0:91,0:3249,0:-292.51,-27.3937,0,-292.51,-27.3937,-292.51	1/1:116:0,115,0:0:0:115,0:4120,0:-370.624,-34.6185,0,-370.624,-34.6185,-370.624	1/1:140:0,140,0:0:0:140,0:5021,0:-452.034,-42.1442,0,-452.034,-42.1442,-452.034	1/2:5:0,3,2:0:0:3,2:108,71:-14.9552,-6.14,-5.23691,-9.17208,0,-8.57002	1/2:160:0,64,95:0:0:64,95:2292,3335:-458.319,-271.399,-252.133,-186.916,0,-158.318	1/2:26:0,10,16:0:0:10,16:360,561:-75.38,-46.0022,-42.9919,-29.734,0,-24.9175	1/2:10:0,8,2:0:0:8,2:288,69:-29.4618,-5.95048,-3.54224,-23.8592,0,-23.2571	1/2:133:0,54,78:0:0:54,78:1921,2675:-373.77,-217.21,-200.955,-156.609,0,-133.128	1/1:25:0,24,0:0:0:24,0:860,0:-77.4675,-7.22472,0,-77.4675,-7.22472,-77.4675	1/1:3:0,3,0:0:0:3,0:108,0:-10.0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chr08	30395765	.	C	G	49434.8	PASS	AB=0.481906;ABP=6.23205;AC=155;AF=0.824468;AN=188;AO=2308;CIGAR=1X;DP=2901;DPB=2901;DPRA=0;EPP=5014.77;EPPR=1258.25;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.2678;MQMR=59.8288;NS=94;NUMALT=1;ODDS=1.40949;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82387;QR=21093;RO=590;RPL=2308;RPP=5014.77;RPPR=1266.87;RPR=0;RUN=1;SAF=0;SAP=5014.77;SAR=2308;SRF=1;SRP=1275.51;SRR=589;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:144:-13.2769,-1.20412,0	1/1:43:0,43:0:0:43:1519:-136.919,-12.9443,0	0/1:46:21,25:21:752:25:896:-67.113,0,-54.1589	1/1:94:1,93:1:36:93:3340:-296.992,-24.6985,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:41:0,41:0:0:41:1468:-132.36,-12.3422,0	1/1:51:0,51:0:0:51:1814:-163.21,-15.3525,0	1/1:47:0,47:0:0:47:1679:-151.305,-14.1484,0	1/1:40:0,40:0:0:40:1424:-128.443,-12.0412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:17:0,17:0:0:17:612:-55.4088,-5.11751,0	1/1:16:0,16:0:0:16:572:-51.7987,-4.81648,0	1/1:10:0,10:0:0:10:356:-32.3134,-3.0103,0	1/1:17:0,17:0:0:17:608:-54.8662,-5.11751,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:38:0,38:0:0:38:1356:-122.271,-11.4391,0	1/1:79:0,79:0:0:79:2814:-252.22,-23.7814,0	0/1:21:12,9:12:432:9:316:-22.4559,0,-32.8996	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:26:0,26:0:0:26:936:-84.537,-7.82678,0	0/1:123:58,65:58:2076:65:2332:-173.093,0,-150.084	0/1:93:47,46:47:1688:46:1644:-120.234,0,-124.211	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:68:0,68:0:0:68:2408:-216.784,-20.47,0	1/1:55:1,54:1:36:54:1940:-171.13,-12.9584,0	0/1:36:18,18:18:648:18:635:-46.6375,0,-47.8148	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:59:0,59:0:0:59:2111:-189.222,-17.7608,0	0/1:42:28,14:28:1004:14:500:-32.6914,0,-78.0326	0/1:16:13,3:13:459:3:108:-5.25869,0,-36.8276	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:43:27,16:27:972:16:576:-39.2307,0,-74.8536	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:48:26,22:26:932:22:788:-56.7949,0,-69.7494	0/1:18:6,12:6:216:12:432:-33.7944,0,-14.372	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:13:7,6:7:239:6:212:-15.5114,0,-17.9293	0/1:23:7,16:7:243:16:572:-44.8897,0,-15.279	0/1:62:30,32:30:1060:32:1152:-85.2262,0,-77.0474	1/1:47:0,47:0:0:47:1684:-151.82,-14.1484,0	1/1:51:0,51:0:0:51:1810:-163.136,-15.3525,0	1/1:57:0,56:0:0:56:1999:-179.811,-16.8577,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:25:16,9:16:568:9:324:-21.9801,0,-43.9261	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:29:14,15:14:504:15:540:-40.1841,0,-36.9682	1/1:9:0,9:0:0:9:320:-29.1368,-2.70927,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	1/1:13:0,13:0:0:13:467:-42.3406,-3.91339,0	1/1:38:0,38:0:0:38:1356:-122.317,-11.4391,0	1/1:29:0,29:0:0:29:1032:-93.1929,-8.72987,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:150:73,76:73:2608:76:2728:-200.568,0,-188.936	1/1:47:0,47:0:0:47:1681:-151.556,-14.1484,0	1/1:22:0,22:0:0:22:788:-71.1999,-6.62266,0	1/1:11:0,11:0:0:11:392:-35.6061,-3.31133,0	1/1:57:1,55:1:36:55:1953:-172.329,-13.6192,0	0/1:60:35,25:35:1256:25:891:-62.427,0,-95.2835	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:14:1,13:1:32:13:456:-38.1435,-1.02299,0	1/1:23:0,23:0:0:23:824:-74.4751,-6.92369,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:43:0,43:0:0:43:1539:-138.648,-12.9443,0	0/1:55:22,33:22:788:33:1163:-88.4025,0,-54.6881	1/1:53:0,53:0:0:53:1882:-169.635,-15.9546,0	1/1:67:0,67:0:0:67:2395:-215.74,-20.169,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:66:0,66:0:0:66:2355:-212.129,-19.868,0	0/1:33:22,11:22:784:11:377:-24.3239,0,-60.914	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:33:17,16:17:608:16:576:-42.1464,0,-45.118	1/1:73:0,73:0:0:73:2612:-235.258,-21.9752,0	1/1:21:0,21:0:0:21:747:-67.5405,-6.32163,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:11:0,11:0:0:11:380:-34.532,-3.31133,0	1/1:31:0,31:0:0:31:1100:-98.9119,-9.33193,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:33:14,19:14:500:19:677:-51.2806,0,-35.3312	1/1:9:0,9:0:0:9:324:-29.3749,-2.70927,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:25:20,5:20:716:5:180:-8.67951,0,-57.242	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	1/1:68:0,68:0:0:68:2409:-217.021,-20.47,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0
chr08	30438625	.	GCT	GCA,ACA	148087	PASS	AB=0.432766,0.562553;ABP=95.2803,82.8798;AC=153,33;AF=0.822581,0.177419;AN=186;AO=5407,1331;CIGAR=2M1X,1X1M1X;DP=6760;DPB=6759.67;DPRA=0,1.0815;EPP=11718.1,2893.24;EPPR=5.18177;GTI=1;LEN=1,3;MEANALT=1.64516,2.275;MQM=59.9869,59.9715;MQMR=60;NS=93;NUMALT=2;ODDS=0.610193;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=193484,46953;QR=28;RO=1;RPL=5405,1331;RPP=11726.8,2893.24;RPPR=5.18177;RPR=2,0;RUN=1,1;SAF=5406,1331;SAP=11735.5,2893.24;SAR=1,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:55:0,55,0:0:0:55,0:1955,0:-176.225,-16.5567,0,-176.225,-16.5567,-176.225	1/2:86:0,42,43:0:0:42,43:1503,1534:-247.612,-125.049,-112.406,-122.561,0,-109.617	1/1:166:0,166,0:0:0:166,0:5947,0:-535.336,-49.971,0,-535.336,-49.971,-535.336	1/2:9:0,1,8:0:0:1,8:36,275:-25.6136,-22.6744,-22.3734,-3.29724,0,-0.889005	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:43:0,43,0:0:0:43,0:1540,0:-138.893,-12.9443,0,-138.893,-12.9443,-138.893	1/1:67:0,67,0:0:0:67,0:2395,0:-215.771,-20.169,0,-215.771,-20.169,-215.771	1/1:97:0,97,0:0:0:97,0:3463,0:-311.882,-29.1999,0,-311.882,-29.1999,-311.882	1/1:95:0,95,0:0:0:95,0:3374,0:-303.863,-28.5979,0,-303.863,-28.5979,-303.863	1/1:66:0,66,0:0:0:66,0:2376,0:-214.097,-19.868,0,-214.097,-19.868,-214.097	1/1:119:0,116,0:0:0:116,0:4144,0:-372.818,-34.9195,0,-372.818,-34.9195,-372.818	1/1:77:0,77,0:0:0:77,0:2755,0:-248.191,-23.1793,0,-248.191,-23.1793,-248.191	1/1:60:0,60,0:0:0:60,0:2151,0:-193.857,-18.0618,0,-193.857,-18.0618,-193.857	1/1:106:0,106,0:0:0:106,0:3808,0:-342.916,-31.9092,0,-342.916,-31.9092,-342.916	1/1:64:0,64,0:0:0:64,0:2292,0:-206.541,-19.2659,0,-206.541,-19.2659,-206.541	1/1:23:0,23,0:0:0:23,0:820,0:-74.1225,-6.92369,0,-74.1225,-6.92369,-74.1225	1/1:30:0,30,0:0:0:30,0:1068,0:-96.4321,-9.0309,0,-96.4321,-9.0309,-96.4321	1/1:32:0,32,0:0:0:32,0:1144,0:-103.27,-9.63296,0,-103.27,-9.63296,-103.27	1/1:98:0,98,0:0:0:98,0:3504,0:-315.571,-29.5009,0,-315.571,-29.5009,-315.571	1/1:225:0,224,0:0:0:224,0:7991,0:-718.851,-67.4307,0,-718.851,-67.4307,-718.851	1/2:16:0,2,14:0:0:2,14:72,494:-46.4541,-40.5784,-39.9764,-6.23466,0,-2.02024	1/1:74:0,74,0:0:0:74,0:2641,0:-237.935,-22.2762,0,-237.935,-22.2762,-237.935	1/2:34:0,23,11:0:0:23,11:828,381:-98.8806,-31.3108,-24.3871,-67.9204,0,-64.6091	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/2:207:0,79,127:0:0:79,127:2827,4489:-596.212,-365.681,-341.899,-230.616,0,-192.385	1/2:260:0,105,153:0:0:105,153:3768,5391:-746.314,-438.96,-407.352,-307.399,0,-261.342	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:185:0,183,0:0:0:183,0:6552,0:-589.401,-55.0885,0,-589.401,-55.0885,-589.401	1/1:70:0,68,2:0:0:68,2:2429,64:-218.544,-20.47,0,-213.389,-14.994,-212.787	1/2:60:0,24,36:0:0:24,36:856,1275:-173.997,-104.216,-96.9912,-70.1364,0,-59.2993	1/2:4:0,1,3:0:0:1,3:36,105:-11.8328,-8.89288,-8.59185,-3.29724,0,-2.39415	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/2:18:0,13,5:0:0:13,5:464,160:-51.0485,-13.1943,-9.28091,-38.1841,0,-36.679	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/1:250:0,250,0:0:0:250,0:8941,0:-804.671,-75.2575,0,-804.671,-75.2575,-804.671	1/2:53:0,23,30:0:0:23,30:805,1048:-151.093,-85.5984,-78.6748,-65.8438,0,-56.8129	1/2:78:0,36,40:0:0:36,40:1296,1430:-222.383,-116.634,-105.797,-105.785,0,-93.7437	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:63:0,25,38:0:0:25,38:896,1348:-183.258,-110.18,-102.654,-73.4346,0,-61.9955	1/2:42:0,14,28:0:0:14,28:500,1003:-122.922,-82.1571,-77.9427,-41.1218,0,-32.6929	1/2:42:0,17,24:0:0:17,24:612,847:-119.039,-69.0983,-63.9808,-50.0684,0,-42.8436	1/2:81:0,39,42:0:0:39,42:1372,1482:-232.714,-121.03,-109.29,-112.036,0,-99.3929	1/1:61:0,61,0:0:0:61,0:2187,0:-197.095,-18.3628,0,-197.095,-18.3628,-197.095	1/2:60:0,27,33:0:0:27,33:968,1154:-173.186,-94.2305,-86.1027,-79.3096,0,-69.3756	1/2:44:0,21,23:0:0:21,23:756,801:-127.174,-65.4827,-59.161,-62.0456,0,-55.1219	1/2:93:0,36,57:0:0:36,57:1292,1990:-267.604,-162.212,-151.375,-105.747,0,-88.588	1/1:82:0,82,0:0:0:82,0:2928,0:-263.755,-24.6845,0,-263.755,-24.6845,-263.755	1/1:52:0,52,0:0:0:52,0:1860,0:-167.68,-15.6536,0,-167.68,-15.6536,-167.68	1/1:73:0,73,0:0:0:73,0:2616,0:-235.688,-21.9752,0,-235.688,-21.9752,-235.688	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/2:62:0,27,35:0:0:27,35:972,1245:-181.131,-101.818,-93.6906,-79.6701,0,-69.134	1/2:54:0,26,28:0:0:26,28:932,987:-156.73,-80.7138,-72.8871,-76.3721,0,-67.9432	1/2:14:0,4,10:0:0:4,10:144,348:-40.3976,-28.6445,-27.4404,-12.1095,0,-9.0992	1/2:115:0,60,54:0:0:60,54:2152,1894:-329.795,-154.267,-136.206,-175.668,0,-159.413	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:8:0,8,0:0:0:8,0:284,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chr08	30470951	.	G	A	300574	PASS	AB=0.474938;ABP=27.0649;AC=155;AF=0.824468;AN=188;AO=10861;CIGAR=1X;DP=13210;DPB=13210;DPRA=0;EPP=23587.4;EPPR=5092.94;GTI=0;LEN=1;MEANALT=1.05319;MQM=55.8882;MQMR=59.9125;NS=94;NUMALT=1;ODDS=6.67336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=387976;QR=83184;RO=2344;RPL=5072;RPP=105.794;RPPR=35.7528;RPR=5789;RUN=1;SAF=5072;SAP=105.794;SAR=5789;SRF=1078;SRP=35.7528;SRR=1266;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:63:0,63:0:0:63:2251:-202.492,-18.9649,0	1/1:153:0,153:0:0:153:5488:-493.555,-46.0576,0	0/1:175:86,89:86:3075:89:3183:-232.871,0,-224.298	1/1:195:1,194:1:36:194:6938:-619.416,-55.1026,0	0/1:157:81,76:81:2853:76:2720:-196.689,0,-209.745	0/1:60:29,31:29:1032:31:1112:-81.9512,0,-75.1307	1/1:128:0,128:0:0:128:4559:-409.832,-38.5318,0	1/1:217:0,217:0:0:217:7788:-697.557,-65.3235,0	1/1:152:0,152:0:0:152:5398:-482.551,-45.7566,0	1/1:155:1,154:1:36:154:5540:-494.082,-43.0618,0	1/1:137:0,137:0:0:137:4878:-438.596,-41.2411,0	1/1:235:1,234:1:36:234:8313:-741.666,-67.1438,0	1/1:188:0,188:0:0:188:6700:-599.797,-56.5936,0	1/1:157:1,155:1:36:155:5515:-491.778,-43.722,0	1/1:173:0,173:0:0:173:6172:-554.243,-52.0782,0	1/1:170:0,170:0:0:170:6072:-544.114,-51.1751,0	1/1:132:0,132:0:0:132:4731:-424.288,-39.736,0	1/1:117:0,117:0:0:117:4204:-377.367,-35.2205,0	1/1:114:0,114:0:0:114:4062:-363.719,-34.3174,0	1/1:230:0,230:0:0:230:8260:-741.068,-69.2369,0	1/1:245:0,245:0:0:245:8749:-784.845,-73.7524,0	0/1:101:68,33:68:2425:33:1184:-76.4046,0,-188.098	1/1:140:0,139:0:0:139:4974:-446.721,-41.8432,0	0/1:166:78,88:78:2770:88:3149:-232.619,0,-199.568	1/1:102:0,102:0:0:102:3629:-325.143,-30.7051,0	0/1:281:165,116:165:5867:116:4147:-288.407,0,-443.536	0/1:349:194,155:194:6903:155:5519:-389.028,0,-516.26	1/1:94:0,94:0:0:94:3372:-302.55,-28.2968,0	1/1:281:1,280:1:36:280:9947:-889.47,-80.9912,0	1/1:123:4,119:4:135:119:4210:-365.865,-24.5442,0	0/1:129:60,69:60:2135:69:2474:-183.474,0,-153.585	0/1:9:3,6:3:104:6:216:-17.0719,0,-6.99354	1/1:11:0,11:0:0:11:396:-35.5909,-3.31133,0	0/1:11:4,7:4:136:7:237:-18.13,0,-9.26421	1/1:12:0,12:0:0:12:432:-39.1252,-3.61236,0	1/1:6:0,6:0:0:6:216:-19.749,-1.80618,0	1/1:385:0,385:0:0:385:13777:-1238.19,-115.897,0	0/1:145:72,73:72:2552:73:2612:-191.341,0,-186.235	0/1:148:69,79:69:2427:79:2817:-208.137,0,-174.132	1/1:4:0,4:0:0:4:140:-12.9285,-1.20412,0	0/1:133:60,73:60:2144:73:2624:-196.001,0,-153.191	0/1:69:31,38:31:1089:38:1360:-101.565,0,-77.5462	0/1:236:99,137:99:3499:137:4873:-366.017,0,-244.065	0/1:168:83,85:83:2950:85:3043:-222.956,0,-215.154	1/1:159:0,158:0:0:158:5672:-509.009,-47.5627,0	0/1:112:53,59:53:1881:59:2109:-155.964,0,-135.851	0/1:139:66,73:66:2338:73:2610:-192.477,0,-168.833	0/1:200:103,97:103:3654:97:3457:-250.277,0,-268.857	1/1:96:0,96:0:0:96:3422:-307.672,-28.8989,0	1/1:180:0,180:0:0:180:6418:-577.117,-54.1854,0	1/1:105:0,105:0:0:105:3731:-334.794,-31.6082,0	0/1:8:5,3:5:180:3:108:-7.66368,0,-14.1438	0/1:116:76,40:76:2705:40:1421:-92.2974,0,-208.772	0/1:45:18,27:18:644:27:957:-72.818,0,-44.7442	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:184:101,83:101:3580:83:2932:-208.088,0,-267.016	1/1:75:0,75:0:0:75:2688:-241.006,-22.5773,0	1/1:11:0,11:0:0:11:396:-35.9198,-3.31133,0	1/1:19:0,19:0:0:19:673:-60.8802,-5.71957,0	1/1:106:0,106:0:0:106:3766:-337.186,-31.9092,0	1/1:176:1,175:1:36:175:6273:-559.396,-49.383,0	1/1:6:0,6:0:0:6:216:-19.6969,-1.80618,0	0/1:179:99,80:99:3539:80:2868:-204.079,0,-264.802	1/1:216:1,215:1:36:215:7713:-689.039,-61.4242,0	1/1:86:0,86:0:0:86:3075:-276.491,-25.8886,0	1/1:114:0,114:0:0:114:4075:-366.504,-34.3174,0	1/1:223:6,217:6:212:217:7764:-678.045,-47.7049,0	0/1:143:93,50:93:3328:50:1783:-117.475,0,-256.673	1/1:83:0,83:0:0:83:2975:-267.085,-24.9855,0	1/1:107:1,106:1:36:106:3790:-335.491,-28.6119,0	1/1:160:0,160:0:0:160:5727:-514.464,-48.1648,0	1/1:14:0,14:0:0:14:504:-45.54,-4.21442,0	1/1:131:0,131:0:0:131:4674:-417.322,-39.4349,0	0/1:115:71,44:71:2503:44:1580:-107.292,0,-190.9	1/1:216:0,215:0:0:215:7663:-687.188,-64.7215,0	1/1:188:1,187:1:36:187:6655:-594.454,-52.9954,0	1/1:174:0,173:0:0:173:6172:-552.63,-52.0782,0	1/1:169:3,166:3:108:166:5953:-521.227,-40.7989,0	0/1:11:8,3:8:288:3:108:-6.55877,0,-22.9561	1/1:166:1,165:1:36:165:5915:-527.511,-46.3727,0	0/1:137:74,63:74:2629:63:2243:-160.071,0,-195.615	1/1:277:1,276:1:36:276:9825:-878.673,-79.787,0	1/1:128:0,128:0:0:128:4583:-412.215,-38.5318,0	1/1:172:0,172:0:0:172:6139:-550.934,-51.7772,0	1/1:187:0,187:0:0:187:6700:-601.483,-56.2926,0	1/1:288:2,286:2:72:286:10242:-913.47,-79.8599,0	1/1:60:0,60:0:0:60:2148:-192.916,-18.0618,0	0/1:142:70,72:70:2487:72:2547:-185.756,0,-181.331	1/1:170:0,170:0:0:170:6078:-545.04,-51.1751,0	0/1:119:49,70:49:1718:70:2492:-187.521,0,-119.079	0/1:240:119,121:119:4143:121:4316:-314.284,0,-300.81	0/1:177:124,53:124:4435:53:1904:-116.978,0,-345.907	1/1:137:0,137:0:0:137:4905:-440.731,-41.2411,0	1/1:283:3,280:3:104:280:9994:-886.778,-75.4887,0
chr08	30470986	.	T	C	124393	PASS	AB=0.489936;ABP=5.19576;AC=155;AF=0.824468;AN=188;AO=5782;CIGAR=1X;DP=7064;DPB=7064;DPRA=18.9785;EPP=12558.5;EPPR=2784.67;GTI=1;LEN=1;MEANALT=1.01075;MQM=53.4198;MQMR=59.9001;NS=94;NUMALT=1;ODDS=2.18891;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206253;QR=45972;RO=1281;RPL=5782;RPP=12558.5;RPPR=2784.67;RPR=0;RUN=1;SAF=0;SAP=12558.5;SAR=5782;SRF=0;SRP=2784.67;SRR=1281;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1324:-119.131,-11.1381,0	1/1:44:0,44:0:0:44:1560:-140.326,-13.2453,0	0/1:104:49,55:49:1756:55:1980:-146.269,0,-127.017	1/1:126:0,126:0:0:126:4490:-403.471,-37.9298,0	0/1:103:53,50:53:1904:50:1778:-128.379,0,-140.632	0/1:34:17,17:17:608:17:612:-44.5511,0,-44.817	1/1:68:0,68:0:0:68:2438:-218.96,-20.47,0	1/1:95:0,95:0:0:95:3408:-305.241,-28.5979,0	1/1:92:0,92:0:0:92:3280:-289.369,-27.6948,0	1/1:62:0,62:0:0:62:2209:-198.319,-18.6639,0	1/1:92:0,92:0:0:92:3296:-296.255,-27.6948,0	1/1:140:1,139:1:36:139:4944:-438.739,-38.5459,0	1/1:107:0,107:0:0:107:3781:-336.879,-32.2102,0	1/1:84:0,84:0:0:84:3008:-269.938,-25.2865,0	1/1:96:0,96:0:0:96:3420:-306.697,-28.8989,0	1/1:89:0,89:0:0:89:3192:-285.532,-26.7917,0	1/1:46:0,46:0:0:46:1644:-146.677,-13.8474,0	1/1:43:0,43:0:0:43:1526:-136.685,-12.9443,0	1/1:65:0,64:0:0:64:2304:-205.36,-19.2659,0	1/1:117:0,117:0:0:117:4179:-375.044,-35.2205,0	1/1:147:0,147:0:0:147:5266:-471.638,-44.2514,0	0/1:61:36,25:36:1284:25:892:-62.1877,0,-97.5006	1/1:118:0,118:0:0:118:4193:-376.21,-35.5215,0	0/1:73:33,40:33:1184:40:1432:-106.351,0,-84.8931	1/1:87:0,87:0:0:87:3078:-275.597,-26.1896,0	0/1:136:76,60:76:2720:60:2152:-152.698,0,-204.103	0/1:190:88,102:88:3164:102:3632:-267.707,0,-227.77	1/1:49:0,49:0:0:49:1747:-156.686,-14.7505,0	1/1:147:1,146:1:36:146:5200:-462.546,-40.6531,0	1/1:58:1,57:1:36:57:2005:-176.012,-13.8615,0	0/1:60:30,30:30:1076:30:1064:-77.5225,0,-79.0911	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	1/1:5:0,5:0:0:5:180:-16.1555,-1.50515,0	0/1:8:3,5:3:108:5:180:-13.9167,0,-7.66693	1/1:11:0,11:0:0:11:396:-35.8867,-3.31133,0	1/1:5:0,5:0:0:5:180:-16.5105,-1.50515,0	1/1:210:0,210:0:0:210:7464:-670.771,-63.2163,0	0/1:58:29,29:29:1032:29:1040:-76.1625,0,-75.7337	0/1:89:40,49:40:1440:49:1760:-131.104,0,-103.106	1/1:4:0,4:0:0:4:136:-12.5623,-1.20412,0	0/1:79:35,44:35:1260:44:1572:-117.667,0,-89.8957	0/1:45:21,24:21:756:24:860:-63.8153,0,-54.8209	0/1:159:65,94:65:2332:94:3372:-254.042,0,-162.247	0/1:80:36,44:36:1296:44:1576:-117.683,0,-92.8615	1/1:81:0,81:0:0:81:2895:-259.894,-24.3834,0	0/1:74:30,44:30:1080:44:1568:-118.904,0,-75.237	0/1:52:31,21:31:1116:21:756:-51.87,0,-85.0981	0/1:109:62,47:62:2212:47:1669:-117.171,0,-166.499	1/1:54:0,54:0:0:54:1924:-172.602,-16.2556,0	1/1:51:0,51:0:0:51:1820:-163.78,-15.3525,0	1/1:66:0,66:0:0:66:2360:-211.276,-19.868,0	0/1:2:1,1:1:36:1:36:-2.99362,0,-2.99621	0/1:62:42,20:42:1508:20:720:-45.4855,0,-117.351	0/1:37:15,22:15:540:22:788:-60.029,0,-37.7984	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:110:64,46:64:2292:46:1640:-114.085,0,-173.426	1/1:50:0,50:0:0:50:1772:-158.484,-15.0515,0	1/1:2:0,2:0:0:2:72:-6.83481,-0.60206,0	1/1:10:0,10:0:0:10:356:-32.3712,-3.0103,0	1/1:86:0,86:0:0:86:3068:-274.61,-25.8886,0	1/1:79:1,78:1:36:78:2772:-245.301,-20.1831,0	1/1:2:0,2:0:0:2:72:-6.74346,-0.60206,0	0/1:85:55,30:55:1972:30:1076:-71.3109,0,-152.055	1/1:69:0,69:0:0:69:2460:-220.625,-20.7711,0	1/1:37:0,37:0:0:37:1317:-118.43,-11.1381,0	1/1:51:0,51:0:0:51:1824:-164.15,-15.3525,0	1/1:99:1,98:1:36:98:3498:-310.648,-26.2037,0	0/1:92:52,40:52:1868:40:1421:-100.308,0,-140.705	1/1:62:0,62:0:0:62:2199:-197.174,-18.6639,0	1/1:53:0,53:0:0:53:1883:-167.964,-15.9546,0	1/1:65:0,65:0:0:65:2324:-207.928,-19.567,0	1/1:12:0,12:0:0:12:432:-39.1085,-3.61236,0	1/1:100:2,98:2:72:98:3500:-304.62,-23.2663,0	0/1:77:51,26:51:1836:26:924:-59.823,0,-142.341	1/1:130:0,130:0:0:130:4628:-415.61,-39.1339,0	1/1:99:1,98:1:36:98:3500:-310.973,-26.2037,0	1/1:108:0,108:0:0:108:3852:-344.49,-32.5112,0	1/1:60:0,60:0:0:60:2118:-187.886,-18.0618,0	0/1:5:4,1:4:144:1:36:-2.08408,0,-11.8085	1/1:57:1,56:1:36:56:2014:-176.964,-13.5604,0	0/1:72:37,35:37:1332:35:1248:-90.1278,0,-98.5082	1/1:158:1,157:1:36:157:5595:-497.543,-43.9645,0	1/1:40:0,40:0:0:40:1436:-129.357,-12.0412,0	1/1:98:0,98:0:0:98:3486:-312.227,-29.5009,0	1/1:54:0,54:0:0:54:1940:-173.43,-16.2556,0	1/1:126:0,126:0:0:126:4494:-403.611,-37.9298,0	1/1:26:0,26:0:0:26:932:-83.2814,-7.82678,0	0/1:64:28,36:28:1004:36:1257:-93.3753,0,-71.4081	1/1:106:0,106:0:0:106:3791:-339.506,-31.9092,0	0/1:96:38,58:38:1364:58:2042:-154.154,0,-94.1537	0/1:186:90,96:90:3236:96:3420:-251.257,0,-235.469	0/1:82:56,26:56:2008:26:936:-58.5373,0,-156.223	1/1:87:0,87:0:0:87:3108:-279.177,-26.1896,0	1/1:152:0,152:0:0:152:5452:-489.448,-45.7566,0
chr08	30483144	.	AGGGG	GGGGG,GGAGG	311706	PASS	AB=0.686362,0.303233;ABP=814.798,907.977;AC=158,30;AF=0.840426,0.159574;AN=188;AO=10565,840;CIGAR=1X4M,1X1M1X2M;DP=11580;DPB=11584.8;DPRA=0,0.855071;EPP=22944.6,1827.05;EPPR=22.5536;GTI=7;LEN=1,5;MEANALT=2.59574,2.94444;MQM=59.7819,59.9798;MQMR=60;NS=94;NUMALT=2;ODDS=2.74293;PAIRED=0,0;PAIREDR=0;PAO=11,9;PQA=314,244;PQR=0;PRO=0;QA=374504,29685;QR=309;RO=9;RPL=6419,840;RPP=1064.91,1827.05;RPPR=5.18177;RPR=4146,0;RUN=1,1;SAF=6419,840;SAP=1064.91,1827.05;SAR=4146,0;SRF=6;SRP=5.18177;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:85:0,83,0:0:0:83,0:2924,0:-263.066,-24.9855,0,-263.066,-24.9855,-263.066	1/1:114:0,113,0:0:0:113,0:4014,0:-361.09,-34.0164,0,-361.09,-34.0164,-361.09	1/2:144:0,119,23:0:0:119,23:4220,792:-408.164,-64.3488,-28.5262,-343.839,0,-336.915	1/1:367:1,360,1:1:27:360,1:12813,36:-1149.84,-106.246,0,-1147.21,-105.422,-1149.03	1/2:31:0,27,4:0:0:27,4:972,144:-91.4198,-12.1095,-3.98169,-79.6701,0,-78.466	1/2:45:0,31,13:0:0:31,13:1108,459:-127.834,-37.4835,-28.1516,-90.4554,0,-86.542	1/1:155:0,151,0:0:0:151,0:5352,0:-481.184,-45.4555,0,-481.184,-45.4555,-481.184	1/1:205:0,204,0:0:0:204,0:7265,0:-653.543,-61.4101,0,-653.543,-61.4101,-653.543	1/1:169:0,167,0:0:0:167,0:5955,0:-535.735,-50.272,0,-535.735,-50.272,-535.735	1/1:153:0,147,0:0:0:147,0:5234,0:-470.853,-44.2514,0,-470.853,-44.2514,-470.853	1/1:111:0,108,0:0:0:108,0:3827,0:-344.146,-32.5112,0,-344.146,-32.5112,-344.146	1/1:261:2,257,0:2:71:257,0:9119,0:-813.975,-71.5496,0,-814.577,-77.3647,-820.362	1/1:163:0,158,0:0:0:158,0:5559,0:-500.111,-47.5627,0,-500.111,-47.5627,-500.111	1/1:145:0,142,0:0:0:142,0:5000,0:-449.91,-42.7463,0,-449.91,-42.7463,-449.91	1/1:140:0,139,0:0:0:139,0:4905,0:-441.314,-41.8432,0,-441.314,-41.8432,-441.314	1/1:196:0,196,0:0:0:196,0:6953,0:-625.773,-59.0019,0,-625.773,-59.0019,-625.773	1/1:72:0,72,0:0:0:72,0:2535,0:-228.401,-21.6742,0,-228.401,-21.6742,-228.401	1/1:69:0,68,0:0:0:68,0:2414,0:-217.155,-20.47,0,-217.155,-20.47,-217.155	1/1:49:0,49,0:0:0:49,0:1724,0:-155.441,-14.7505,0,-155.441,-14.7505,-155.441	1/1:209:0,206,0:0:0:206,0:7309,0:-657.43,-62.0122,0,-657.43,-62.0122,-657.43	1/1:235:0,234,0:0:0:234,0:8248,0:-741.972,-70.441,0,-741.972,-70.441,-741.972	1/2:50:0,30,19:0:0:30,19:1072,675:-142.464,-55.084,-46.0531,-87.4603,0,-81.7408	1/1:160:0,159,0:0:0:159,0:5569,0:-500.703,-47.8638,0,-500.703,-47.8638,-500.703	1/2:103:0,67,35:0:0:67,35:2385,1221:-293.731,-99.3443,-79.1753,-194.426,0,-183.89	1/1:125:0,125,0:0:0:125,0:4420,0:-397.973,-37.6288,0,-397.973,-37.6288,-397.973	1/2:208:0,136,71:0:0:136,71:4778,2536:-595.605,-206.729,-165.789,-388.842,0,-367.469	1/2:183:0,140,42:0:0:140,42:5004,1494:-529.812,-121.811,-79.6663,-408.056,0,-395.413	1/1:63:1,61,0:1:35:61,0:2111,0:-186.757,-15.5135,0,-187.058,-18.3628,-189.906	1/1:328:1,320,0:1:36:320,0:11307,0:-1013.51,-93.3793,0,-1013.81,-96.3296,-1016.75	1/1:179:0,169,6:0:0:169,6:5989,214:-538.756,-50.8741,0,-521.311,-33.425,-519.504	1/2:74:0,56,17:0:0:56,17:1972,605:-209.686,-49.3039,-32.4462,-160.377,0,-155.26	1/2:8:0,6,2:0:0:6,2:216,72:-23.8592,-6.23466,-4.42848,-17.9843,0,-17.3823	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/1:6:0,5,0:0:0:5,0:176,0:-15.9514,-1.50515,0,-15.9514,-1.50515,-15.9514	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:17:0,17,0:0:0:17,0:612,0:-55.413,-5.11751,0,-55.413,-5.11751,-55.413	1/1:477:0,473,0:0:0:473,0:16772,0:-1507.95,-142.387,0,-1507.95,-142.387,-1507.95	1/2:114:0,79,34:0:0:79,34:2832,1210:-329.7,-98.7179,-74.9366,-231.085,0,-220.85	1/2:93:0,53,39:0:0:53,39:1884,1353:-263.603,-110.069,-94.1143,-153.631,0,-141.891	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:104:0,76,27:0:0:76,27:2706,962:-298.957,-78.4086,-55.5303,-220.545,0,-212.417	1/2:41:0,23,18:0:0:23,18:820,637:-119.084,-52.24,-45.3163,-67.1987,0,-61.7801	1/1:151:0,136,13:0:0:136,13:4860,463:-437.209,-40.9401,0,-399.471,-3.10197,-395.558	1/2:96:0,61,33:0:0:61,33:2136,1163:-268.449,-94.7669,-76.404,-173.757,0,-163.823	1/1:107:0,105,0:0:0:105,0:3714,0:-334.076,-31.6082,0,-334.076,-31.6082,-334.076	1/2:119:0,85,33:0:0:85,33:3014,1171:-340.909,-95.4033,-69.8157,-245.5,0,-235.566	1/2:55:0,30,25:0:0:30,25:1072,889:-160.208,-72.8028,-63.7719,-87.7616,0,-80.2358	1/2:137:0,114,20:0:0:114,20:4065,713:-389.54,-58.2205,-23.9031,-331.419,0,-325.399	1/1:108:0,107,0:0:0:107,0:3803,0:-342.103,-32.2102,0,-342.103,-32.2102,-342.103	1/1:207:1,201,0:1:35:201,0:7140,0:-638.853,-57.6561,0,-639.154,-60.507,-642.001	1/1:126:0,121,0:0:0:121,0:4337,0:-389.954,-36.4246,0,-389.954,-36.4246,-389.954	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:73:0,55,18:0:0:55,18:1948,633:-210.558,-51.8781,-35.3215,-159.032,0,-153.614	1/2:67:0,42,24:0:0:42,24:1484,860:-191.142,-70.2863,-57.643,-121,0,-113.775	1/2:7:0,2,4:0:0:2,4:72,144:-17.7444,-11.8615,-11.2595,-5.96806,0,-4.76394	1/2:110:0,96,14:0:0:96,14:3437,489:-320.414,-40.1259,-11.227,-280.638,0,-276.424	1/1:91:0,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chr08	30563466	.	C	T	429728	PASS	AB=0.468619;ABP=54.1171;AC=157;AF=0.835106;AN=188;AO=15554;CIGAR=1X;DP=18764;DPB=18764;DPRA=0;EPP=33769.4;EPPR=6949.55;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9896;MQMR=59.9941;NS=94;NUMALT=1;ODDS=4.89473;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=551747;QR=112806;RO=3203;RPL=7015;RPP=327.262;RPPR=51.3406;RPR=8539;RUN=1;SAF=7016;SAP=326.411;SAR=8538;SRF=1467;SRP=52.0674;SRR=1736;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:99:0,99:0:0:99:3519:-316.919,-29.802,0	1/1:199:0,199:0:0:199:7065:-635.914,-59.905,0	0/1:244:108,136:108:3832:136:4835:-361.854,0,-271.626	1/1:483:0,483:0:0:483:17141:-1542.34,-145.397,0	0/1:86:35,51:35:1251:51:1809:-137.202,0,-87.0057	0/1:133:52,81:52:1832:81:2884:-219.76,0,-125.121	1/1:168:0,168:0:0:168:5975:-537.858,-50.573,0	1/1:267:0,267:0:0:267:9509:-855.769,-80.375,0	1/1:205:0,205:0:0:205:7229:-650.672,-61.7112,0	1/1:174:0,174:0:0:174:6173:-555.675,-52.3792,0	1/1:196:0,196:0:0:196:6949:-625.477,-59.0019,0	1/1:226:0,226:0:0:226:8018:-721.645,-68.0328,0	1/1:217:1,216:1:36:216:7591:-679.642,-61.7252,0	1/1:243:0,242:0:0:242:8530:-767.351,-72.8493,0	1/1:188:1,186:1:36:186:6585:-589.137,-53.0542,0	1/1:157:0,157:0:0:157:5600:-504.125,-47.2617,0	1/1:163:0,163:0:0:163:5793:-521.487,-49.0679,0	1/1:163:1,162:1:36:162:5732:-512.404,-45.4696,0	1/1:91:0,91:0:0:91:3247:-292.451,-27.3937,0	1/1:331:1,330:1:36:330:11686:-1048.02,-96.0427,0	1/1:263:0,263:0:0:263:9289:-835.986,-79.1709,0	0/1:122:95,27:95:3346:27:940:-48.1851,0,-264.635	1/1:228:0,228:0:0:228:8089:-728.033,-68.6348,0	0/1:179:90,88:90:3181:88:3164:-231.041,0,-232.572	1/1:159:0,159:0:0:159:5605:-504.577,-47.8638,0	0/1:511:280,231:280:9869:231:8193:-583.56,0,-734.337	0/1:426:220,206:220:7688:206:7301:-528.907,0,-563.729	1/1:100:0,100:0:0:100:3548:-319.529,-30.103,0	1/1:457:0,457:0:0:457:16323:-1468.74,-137.571,0	1/1:235:5,230:5:171:230:8192:-721.568,-55.0166,0	0/1:256:116,140:116:4058:140:4953:-368.859,0,-288.346	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:513:0,513:0:0:513:18118:-1630.24,-154.428,0	0/1:184:93,91:93:3300:91:3224:-234.994,0,-241.829	0/1:168:81,87:81:2865:87:3076:-226.496,0,-207.514	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:281:153,128:153:5383:128:4575:-327.326,0,-399.999	0/1:69:29,40:29:985:40:1419:-107.236,0,-68.1825	1/1:297:1,296:1:36:296:10480:-939.525,-85.8076,0	1/1:211:0,211:0:0:211:7495:-674.597,-63.5173,0	1/1:167:0,167:0:0:167:5894:-530.577,-50.272,0	0/1:209:92,117:92:3261:117:4165:-312.117,0,-230.796	0/1:194:102,92:102:3647:92:3274:-236.48,0,-270.034	0/1:325:173,152:173:6101:152:5372:-385.78,0,-451.358	1/1:183:2,181:2:72:181:6449:-573.662,-48.2518,0	1/1:245:0,245:0:0:245:8732:-785.871,-73.7524,0	1/1:221:0,221:0:0:221:7861:-707.521,-66.5276,0	0/1:22:10,12:10:352:12:432:-32.5985,0,-25.3955	0/1:240:121,118:121:4290:118:4180:-304.117,0,-314.014	0/1:139:74,65:74:2597:65:2310:-166.317,0,-192.134	0/1:27:13,14:13:460:14:504:-37.5703,0,-33.6076	0/1:219:118,101:118:4109:101:3575:-256.034,0,-304.071	1/1:110:1,109:1:36:109:3838:-342.02,-29.515,0	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:159:0,159:0:0:159:5676:-510.958,-47.8638,0	1/1:253:1,252:1:36:252:8951:-801.979,-72.5623,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:284:140,144:140:4961:144:5103:-373.924,0,-361.151	1/1:306:2,304:2:72:304:10835:-968.22,-85.2785,0	1/1:187:0,187:0:0:187:6663:-599.749,-56.2926,0	1/1:183:0,183:0:0:183:6528:-586.331,-55.0885,0	1/1:280:4,276:4:127:276:9810:-871.105,-72.544,0	0/1:317:205,112:205:7283:112:4024:-266.921,0,-560.097	1/1:150:1,149:1:36:149:5243:-468.41,-41.5562,0	1/1:120:0,120:0:0:120:4254:-383.041,-36.1236,0	1/1:196:2,194:2:72:194:6871:-611.627,-52.1652,0	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	1/1:187:1,186:1:36:186:6659:-595.789,-52.6943,0	0/1:219:124,95:124:4367:95:3395:-239.839,0,-327.28	1/1:302:0,302:0:0:302:10691:-962.088,-90.9111,0	1/1:402:0,401:0:0:401:14209:-1278.21,-120.713,0	1/1:223:0,223:0:0:223:7910:-711.93,-67.1297,0	1/1:240:0,240:0:0:240:8535:-768.153,-72.2472,0	0/1:23:12,11:12:419:11:396:-29.0591,0,-31.119	1/1:266:0,265:0:0:265:9341:-840.303,-79.773,0	0/1:241:147,94:147:5153:94:3342:-228.45,0,-391.368	1/1:398:0,398:0:0:398:14149:-1273.18,-119.81,0	1/1:199:1,198:1:36:198:6944:-621.441,-56.3067,0	1/1:228:1,227:1:32:227:8076:-723.66,-65.4355,0	1/1:207:0,207:0:0:207:7280:-655.26,-62.3132,0	1/1:383:4,379:4:144:379:13377:-1190.42,-101.981,0	1/1:97:0,97:0:0:97:3451:-310.804,-29.1999,0	0/1:186:104,82:104:3663:82:2873:-202.815,0,-273.884	1/1:216:1,215:1:32:215:7620:-682.643,-61.8232,0	0/1:174:95,79:95:3330:79:2795:-199.41,0,-247.538	0/1:301:164,136:164:5743:136:4812:-342.716,0,-426.474	0/1:185:124,61:124:4326:61:2150:-138.075,0,-333.828	1/1:235:0,235:0:0:235:8382:-754.331,-70.7421,0	1/1:274:0,274:0:0:274:9695:-872.51,-82.4822,0
chr08	30564371	.	CGC	TGC	176993	PASS	AB=0.502805;ABP=3.22961;AC=160;AF=0.851064;AN=188;AO=8099;CIGAR=1X2M;DP=9778;DPB=9778;DPRA=0;EPP=17589.8;EPPR=3499.09;GTI=1;LEN=1;MEANALT=1.55319;MQM=59.9804;MQMR=59.9827;NS=94;NUMALT=1;ODDS=0.893281;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=289894;QR=57046;RO=1614;RPL=0;RPP=17589.8;RPPR=3507.77;RPR=8099;RUN=1;SAF=8099;SAP=17589.8;SAR=0;SRF=1613;SRP=3499.09;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:78:57,21:57:1981:21:752:-44.5259,0,-155.082	1/1:168:0,167:0:0:167:6004:-540.152,-50.272,0	0/1:62:11,51:11:396:51:1817:-145.146,0,-17.3189	0/1:51:28,23:28:992:23:824:-59.1308,0,-74.2414	1/1:101:0,100:0:0:100:3588:-322.766,-30.103,0	1/1:203:0,202:0:0:202:7212:-648.775,-60.8081,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:127:2,123:2:61:123:4390:-389.449,-32.1672,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:69:0,68:0:0:68:2428:-218.416,-20.47,0	1/1:50:0,48:0:0:48:1700:-152.924,-14.4494,0	1/1:69:0,69:0:0:69:2463:-221.924,-20.7711,0	1/1:51:0,51:0:0:51:1806:-162.818,-15.3525,0	1/1:73:0,73:0:0:73:2607:-234.87,-21.9752,0	1/1:56:0,56:0:0:56:2002:-180.453,-16.8577,0	1/1:60:1,59:1:36:59:2120:-187.47,-14.4635,0	1/1:118:0,117:0:0:117:4190:-376.921,-35.2205,0	1/1:203:0,203:0:0:203:7280:-655.25,-61.1091,0	1/1:138:0,135:0:0:135:4801:-431.884,-40.6391,0	0/1:96:65,31:65:2255:31:1112:-71.4925,0,-174.309	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:84:27,57:27:970:57:2052:-159.665,0,-62.3312	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:298:190,104:190:6710:104:3690:-243.438,0,-514.631	0/1:207:103,104:103:3651:104:3721:-272.776,0,-266.481	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:209:0,208:0:0:208:7445:-669.753,-62.6142,0	1/1:53:2,50:2:72:50:1796:-155.086,-9.17667,0	0/1:70:29,40:29:1026:40:1440:-108.767,0,-71.5206	1/1:252:6,243:6:216:243:8667:-760.229,-55.5214,0	1/1:237:0,237:0:0:237:8434:-759.065,-71.3441,0	1/1:101:3,98:3:108:98:3512:-306.215,-20.3289,0	1/1:29:0,28:0:0:28:1008:-90.7247,-8.42884,0	1/1:279:0,275:0:0:275:9854:-886.419,-82.7833,0	1/1:207:0,206:0:0:206:7372:-663.166,-62.0122,0	0/1:191:131,57:131:4646:57:2034:-126.377,0,-361.352	0/1:190:24,166:24:862:166:5965:-479.758,0,-20.7066	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:102:46,56:46:1637:56:2012:-150.648,0,-116.913	0/1:42:17,25:17:612:25:900:-68.6778,0,-42.7702	1/1:102:0,101:0:0:101:3624:-326.074,-30.404,0	1/1:69:0,68:0:0:68:2440:-219.604,-20.47,0	1/1:65:0,64:0:0:64:2300:-207.048,-19.2659,0	0/1:90:57,33:57:2015:33:1184:-79.7756,0,-154.529	0/1:146:52,94:52:1833:94:3350:-257.764,0,-121.3	0/1:241:96,143:96:3434:143:5136:-390.148,0,-237.042	1/1:83:0,81:0:0:81:2897:-260.604,-24.3834,0	1/1:188:1,186:1:36:186:6673:-597.046,-53.0542,0	1/1:124:0,123:0:0:123:4404:-396.192,-37.0267,0	0/1:33:6,27:6:216:27:953:-76.1493,0,-9.85652	0/1:137:56,81:56:1997:81:2897:-219.723,0,-138.763	0/1:28:15,12:15:538:12:432:-30.7336,0,-40.2682	0/1:33:7,26:7:252:26:928:-73.9043,0,-13.095	0/1:160:97,63:97:3434:63:2268:-156.217,0,-261.11	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:175:0,174:0:0:174:6240:-561.333,-52.3792,0	1/1:19:0,18:0:0:18:648:-58.2921,-5.41854,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:110:0,108:0:0:108:3868:-347.999,-32.5112,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:272:188,84:188:6626:84:3006:-188.891,0,-514.544	1/1:81:0,80:0:0:80:2856:-256.91,-24.0824,0	1/1:73:0,73:0:0:73:2587:-232.807,-21.9752,0	1/1:110:0,110:0:0:110:3948:-355.509,-33.1133,0	1/1:122:0,120:0:0:120:4299:-386.726,-36.1236,0	0/1:37:26,11:26:912:11:384:-23.7566,0,-71.2573	1/1:90:0,90:0:0:90:3221:-290.111,-27.0927,0	1/1:54:0,51:0:0:51:1836:-165.192,-15.3525,0	1/1:67:0,67:0:0:67:2412:-217.178,-20.169,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:79:1,77:1:36:77:2748:-244.009,-20.1964,0	0/1:46:27,18:27:950:18:648:-44.7457,0,-71.9082	1/1:81:0,80:0:0:80:2868:-257.997,-24.0824,0	1/1:290:0,289:0:0:289:10356:-931.556,-86.9977,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:146:1,143:1:36:143:5122:-457.334,-40.1099,0	1/1:300:14,285:14:480:285:10167:-871.434,-46.842,0	1/1:152:0,151:0:0:151:5432:-488.646,-45.4555,0	0/1:135:76,59:76:2679:59:2116:-150.07,0,-200.716	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:123:0,123:0:0:123:4399:-396.081,-37.0267,0	1/1:128:0,127:0:0:127:4545:-408.856,-38.2308,0	1/1:46:0,44:0:0:44:1584:-142.492,-13.2453,0	0/1:102:54,48:54:1916:48:1716:-124.021,0,-142.012	1/1:59:0,59:0:0:59:2103:-189.539,-17.7608,0	0/1:42:16,26:16:563:26:936:-71.9162,0,-38.356	0/1:166:30,136:30:1053:136:4883:-389.649,0,-45.1088	0/1:69:52,17:52:1809:17:612:-34.6424,0,-142.316	1/1:83:0,83:0:0:83:2950:-265.731,-24.9855,0	1/1:73:0,70:0:0:70:2508:-225.654,-21.0721,0
chr08	30564511	.	C	T	22968.2	PASS	AB=0.525097;ABP=17.1794;AC=31;AF=0.164894;AN=188;AO=1373;CIGAR=1X;DP=7574;DPB=7574;DPRA=1.24022;EPP=2975.76;EPPR=13437.9;GTI=0;LEN=1;MEANALT=1;MQM=59.9782;MQMR=59.9971;NS=94;NUMALT=1;ODDS=0.703229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48730;QR=221488;RO=6199;RPL=1373;RPP=2984.44;RPPR=13464;RPR=0;RUN=1;SAF=1;SAP=2975.76;SAR=1372;SRF=3;SRP=13437.9;SRR=6196;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:59:59,0:59:2082:0:0:0,-17.7608,-187.647	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:97:30,67:30:1076:67:2336:-181.294,0,-67.9529	0/0:142:142,0:142:5100:0:0:0,-42.7463,-459.141	0/1:46:23,23:23:820:23:809:-59.1743,0,-60.2751	0/1:38:24,14:24:856:14:485:-32.5378,0,-65.922	0/0:121:121,0:121:4305:0:0:0,-36.4246,-387.628	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.957	0/0:95:94,1:94:3361:1:36:0,-24.9996,-299.107	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:81:81,0:81:2870:0:0:0,-24.3834,-258.535	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/0:191:190,1:190:6778:1:36:0,-53.8985,-606.494	0/0:130:130,0:130:4657:0:0:0,-39.1339,-419.29	0/1:118:51,67:51:1809:67:2365:-177.586,0,-127.568	0/0:141:141,0:141:5026:0:0:0,-42.4452,-452.485	0/1:56:29,27:29:1040:27:949:-68.8645,0,-77.0567	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/1:161:70,91:70:2504:91:3225:-242.007,0,-177.147	0/1:225:101,124:101:3628:124:4436:-331.68,0,-258.992	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:172:172,0:172:6112:0:0:0,-51.7772,-550.179	0/0:238:230,8:230:8226:8:280:0,-46.1058,-714.81	0/1:78:39,39:39:1400:39:1385:-101.467,0,-102.819	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/0:162:162,0:162:5816:0:0:0,-48.7669,-523.551	0/1:95:64,31:64:2292:31:1108:-71.4331,0,-177.944	0/1:82:40,42:40:1436:42:1496:-110.25,0,-104.853	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:97:45,52:45:1593:52:1841:-136.768,0,-114.458	0/1:51:15,36:15:536:36:1284:-100.511,0,-33.2223	0/0:98:98,0:98:3494:0:0:0,-29.5009,-314.668	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:87:47,40:47:1684:40:1420:-101.908,0,-125.657	0/1:56:34,22:34:1224:22:776:-53.3045,0,-93.6094	0/1:116:76,40:76:2720:40:1432:-94.2581,0,-210.124	0/0:77:76,1:76:2728:1:36:0,-19.581,-242.164	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:110:110,0:110:3921:0:0:0,-33.1133,-353.083	0/1:10:9,1:9:324:1:32:-0.189013,0,-26.4956	0/1:88:57,31:57:2021:31:1103:-73.09,0,-155.671	0/1:103:57,46:57:2048:46:1621:-115.171,0,-153.585	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:92:55,37:55:1976:37:1294:-89.0622,0,-150.42	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:101:101,0:101:3590:0:0:0,-30.404,-323.305	0/0:134:134,0:134:4787:0:0:0,-40.338,-430.987	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:134:39,95:39:1366:95:3354:-261.743,0,-82.8964	0/0:84:83,1:83:2961:1:36:0,-21.6882,-263.124	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/0:69:68,0:68:2410:0:0:0,-20.47,-216.833	0/1:130:51,79:51:1828:79:2824:-215.265,0,-125.667	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/0:47:47,0:47:1643:0:0:0,-14.1484,-148.152	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:63:35,28:35:1252:28:993:-70.7176,0,-94.0202	0/0:202:201,0:201:7205:0:0:0,-60.507,-648.142	0/0:152:152,0:152:5452:0:0:0,-45.7566,-490.807	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:69:69,0:69:2453:0:0:0,-20.7711,-221.023	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433	0/1:68:33,35:33:1158:35:1214:-89.0891,0,-84.0525	0/0:195:195,0:195:6897:0:0:0,-58.7008,-620.8	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.554	0/0:56:56,0:56:1997:0:0:0,-16.8577,-180.002	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:103:102,1:102:3621:1:36:0,-27.4078,-322.483	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:76:39,37:39:1385:37:1320:-96.2237,0,-102.069	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:64:35,29:35:1260:29:1044:-75.0089,0,-94.4396	0/1:176:83,93:83:2980:93:3308:-244.957,0,-215.451	0/1:140:30,110:30:1065:110:3956:-314.085,0,-54.0156	0/0:71:71,0:71:2517:0:0:0,-21.3731,-226.781	0/0:84:84,0:84:3009:0:0:0,-25.2865,-271.039
chr08	30588520	.	T	G	175964	PASS	AB=0.518023;ABP=11.2288;AC=157;AF=0.835106;AN=188;AO=7927;CIGAR=1X;DP=9349;DPB=9349;DPRA=0;EPP=16870.6;EPPR=2974.62;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.915;MQMR=59.9479;NS=94;NUMALT=1;ODDS=1.26086;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=283289;QR=50860;RO=1420;RPL=40;RPP=16870.6;RPPR=2974.62;RPR=7887;RUN=1;SAF=7927;SAP=17216.3;SAR=0;SRF=1420;SRP=3086.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1268:-114.421,-10.8371,0	1/1:96:0,96:0:0:96:3440:-309.813,-28.8989,0	0/1:111:55,56:55:1967:56:2006:-147.399,0,-143.89	1/1:236:0,236:0:0:236:8430:-758.696,-71.0431,0	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:40:12,28:12:432:28:1004:-78.6347,0,-27.1791	1/1:119:0,119:0:0:119:4268:-384.269,-35.8226,0	1/1:151:1,150:1:36:150:5328:-476.054,-41.8573,0	1/1:155:0,155:0:0:155:5548:-499.445,-46.6597,0	1/1:118:0,118:0:0:118:4202:-378.36,-35.5215,0	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	1/1:145:0,145:0:0:145:5185:-466.789,-43.6494,0	1/1:102:1,101:1:36:101:3604:-320.967,-27.1068,0	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	1/1:78:0,78:0:0:78:2804:-252.571,-23.4803,0	1/1:78:0,78:0:0:78:2791:-251.43,-23.4803,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:138:0,138:0:0:138:4938:-444.565,-41.5421,0	1/1:196:0,196:0:0:196:7007:-630.691,-59.0019,0	0/1:61:44,17:44:1571:17:608:-36.682,0,-123.313	1/1:108:1,106:1:36:106:3799:-338.528,-28.9518,0	0/1:61:16,45:16:576:45:1596:-125.56,0,-33.8122	1/1:106:0,106:0:0:106:3798:-342.015,-31.9092,0	0/1:285:136,149:136:4879:149:5331:-394.121,0,-353.438	0/1:189:98,91:98:3520:91:3272:-237.804,0,-260.114	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:252:0,252:0:0:252:8979:-808.033,-75.8596,0	1/1:148:7,141:7:248:141:5034:-430.509,-21.8882,0	0/1:210:90,120:90:3224:120:4281:-322.251,0,-227.166	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:5:2,3:2:72:3:93:-7.1691,0,-5.33157	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:206:0,206:0:0:206:7366:-662.98,-62.0122,0	0/1:110:52,58:52:1864:58:2041:-150.845,0,-134.926	0/1:41:22,19:22:792:19:684:-49.5481,0,-59.2634	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:165:75,90:75:2691:90:3206:-239.091,0,-192.764	0/1:22:11,11:11:396:11:388:-28.6347,0,-29.3601	1/1:145:0,145:0:0:145:5160:-463.817,-43.6494,0	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:95:0,95:0:0:95:3379:-303.834,-28.5979,0	0/1:96:31,65:31:1112:65:2323:-180.431,0,-71.4549	0/1:136:60,76:60:2148:76:2735:-205.452,0,-152.647	0/1:151:87,64:87:3115:64:2296:-161.425,0,-235.12	1/1:120:0,120:0:0:120:4299:-387.083,-36.1236,0	1/1:149:0,149:0:0:149:5336:-480.37,-44.8535,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	0/1:130:72,58:72:2571:58:2084:-148.696,0,-192.505	0/1:64:40,24:40:1424:24:845:-57.1012,0,-109.192	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:92:34,58:34:1220:58:2065:-158.424,0,-82.3896	1/1:41:0,41:0:0:41:1458:-131.498,-12.3422,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:104:0,104:0:0:104:3724:-335.361,-31.3071,0	1/1:116:0,116:0:0:116:4143:-373.052,-34.9195,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:161:60,100:60:2152:100:3571:-273.221,0,-145.57	1/1:165:0,165:0:0:165:5920:-532.907,-49.67,0	1/1:78:0,78:0:0:78:2766:-249.173,-23.4803,0	1/1:110:0,110:0:0:110:3869:-348.36,-33.1133,0	1/1:203:1,202:1:36:202:7206:-644.941,-57.5108,0	0/1:121:80,41:80:2863:41:1456:-94.9092,0,-221.482	1/1:51:0,51:0:0:51:1827:-164.71,-15.3525,0	1/1:85:0,85:0:0:85:3039:-273.731,-25.5876,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:26:0,26:0:0:26:921:-83.2052,-7.82678,0	1/1:132:0,132:0:0:132:4728:-425.661,-39.736,0	0/1:97:45,52:45:1607:52:1848:-137.398,0,-115.719	1/1:173:0,173:0:0:173:6171:-555.476,-52.0782,0	1/1:193:2,191:2:72:191:6839:-608.706,-51.2621,0	1/1:59:2,57:2:72:57:2033:-176.382,-10.924,0	1/1:118:1,117:1:36:117:4182:-372.934,-31.9233,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:120:0,120:0:0:120:4278:-385.168,-36.1236,0	0/1:152:56,96:56:1993:96:3452:-265.135,0,-133.886	1/1:310:1,309:1:36:309:11043:-990.163,-89.721,0	1/1:83:0,83:0:0:83:2975:-267.971,-24.9855,0	1/1:71:0,71:0:0:71:2552:-229.902,-21.3731,0	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	1/1:148:0,148:0:0:148:5293:-476.503,-44.5524,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:80:41,39:41:1460:39:1387:-101.046,0,-107.614	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0	0/1:58:35,23:35:1260:23:828:-57.3844,0,-96.2457	0/1:112:52,60:52:1855:60:2132:-158.381,0,-133.514	0/1:103:73,30:73:2624:30:1058:-64.5113,0,-205.393	1/1:169:0,169:0:0:169:6021:-541.928,-50.8741,0	1/1:130:0,130:0:0:130:4660:-419.559,-39.1339,0
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chr08	30588593	.	T	A	163945	PASS	AB=0.532229;ABP=33.5239;AC=156;AF=0.829787;AN=188;AO=8912;CIGAR=1X;DP=10509;DPB=10509;DPRA=112.989;EPP=19320.4;EPPR=3431.79;GTI=3;LEN=1;MEANALT=1.09677;MQM=34.1326;MQMR=49.0624;NS=94;NUMALT=1;ODDS=0.0403516;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=319457;QR=56490;RO=1587;RPL=8908;RPP=19320.4;RPPR=3431.79;RPR=4;RUN=1;SAF=0;SAP=19355.2;SAR=8912;SRF=0;SRP=3449.14;SRR=1587;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1707:-138.245,-14.4494,0	1/1:67:0,67:0:0:67:2403:-194.734,-20.169,0	0/1:174:94,80:94:3356:80:2880:-179.538,0,-248.07	1/1:400:0,400:0:0:400:14314:-1137.79,-120.412,0	0/1:14:5,9:5:180:9:324:-22.4041,0,-12.2234	0/1:17:8,9:8:288:9:324:-21.501,0,-21.0075	1/1:131:0,131:0:0:131:4704:-374.114,-39.4349,0	1/1:198:0,198:0:0:198:7093:-573.419,-59.6039,0	1/1:173:0,173:0:0:173:6191:-500.668,-52.0782,0	1/1:115:0,115:0:0:115:4106:-328.766,-34.6185,0	1/1:36:0,36:0:0:36:1292:-102.607,-10.8371,0	1/1:124:0,124:0:0:124:4443:-357.046,-37.3277,0	1/1:95:0,95:0:0:95:3411:-273.934,-28.5979,0	1/1:70:0,70:0:0:70:2516:-203.538,-21.0721,0	1/1:95:0,95:0:0:95:3412:-270.467,-28.5979,0	1/1:71:0,71:0:0:71:2556:-206.496,-21.3731,0	1/1:43:0,43:0:0:43:1539:-123.815,-12.9443,0	1/1:32:0,31:0:0:31:1112:-90.3669,-9.33193,0	1/1:42:0,42:0:0:42:1508:-123.309,-12.6433,0	1/1:269:0,269:0:0:269:9664:-764.883,-80.9771,0	1/1:220:0,219:0:0:219:7836:-632.354,-65.9256,0	0/1:79:53,26:53:1869:26:936:-49.6214,0,-143.516	1/1:205:0,205:0:0:205:7336:-579.055,-61.7112,0	0/1:35:21,14:21:752:14:504:-29.9833,0,-57.0294	1/1:85:0,85:0:0:85:3056:-246.655,-25.5876,0	0/1:331:139,192:139:4957:192:6881:-434.222,0,-344.784	0/1:145:51,93:51:1832:93:3340:-222.922,0,-119.162	1/1:48:0,48:0:0:48:1728:-139.147,-14.4494,0	1/1:380:2,376:2:72:376:13496:-1056.04,-107.327,0	1/1:155:1,154:1:36:154:5532:-444.118,-43.0665,0	0/1:133:58,75:58:2068:75:2696:-174.093,0,-143.994	0/1:6:1,5:1:36:5:180:-13.1262,0,-1.76725	1/1:36:0,36:0:0:36:1272:-102.733,-10.8371,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.57877	1/1:3:0,3:0:0:3:108:-8.23578,-0.90309,0	1/1:19:0,19:0:0:19:684:-55.8339,-5.71957,0	1/1:161:0,161:0:0:161:5779:-456.962,-48.4658,0	0/1:129:66,63:66:2351:63:2256:-140.285,0,-171.632	0/1:48:28,20:28:992:20:716:-43.3573,0,-74.1907	1/1:3:0,3:0:0:3:108:-9.08924,-0.90309,0	0/1:274:128,146:128:4572:146:5221:-335.883,0,-325.699	0/1:23:10,13:10:360:13:468:-30.6921,0,-25.3196	1/1:171:0,171:0:0:171:6116:-497.976,-51.4761,0	1/1:101:0,101:0:0:101:3636:-288.564,-30.404,0	1/1:73:0,73:0:0:73:2624:-204.881,-21.9752,0	0/1:80:36,44:36:1280:44:1571:-101.918,0,-91.0416	0/1:146:53,93:53:1888:93:3321:-222.022,0,-123.842	0/1:275:160,114:160:5694:114:4088:-241.364,0,-425.159	1/1:96:0,96:0:0:96:3440:-271.826,-28.8989,0	1/1:184:0,184:0:0:184:6591:-525.379,-55.3895,0	1/1:84:0,84:0:0:84:3020:-240.887,-25.2865,0	0/1:8:6,2:6:212:2:72:-3.64825,0,-16.8716	0/1:113:44,69:44:1561:69:2476:-166.642,0,-105.292	0/1:107:43,64:43:1494:64:2284:-150.251,0,-102.344	0/1:11:4,7:4:140:7:252:-17.4641,0,-9.57182	0/1:213:88,125:88:3124:125:4475:-294.47,0,-215.177	1/1:41:0,41:0:0:41:1464:-117.356,-12.3422,0	1/1:15:0,15:0:0:15:540:-42.441,-4.51545,0	1/1:9:0,9:0:0:9:324:-26.1385,-2.70927,0	1/1:91:0,91:0:0:91:3257:-262.657,-27.3937,0	1/1:92:0,92:0:0:92:3306:-261.746,-27.6948,0	1/1:12:0,12:0:0:12:432:-34.7451,-3.61236,0	0/1:254:102,152:102:3610:152:5430:-354.621,0,-247.525	1/1:156:0,156:0:0:156:5604:-443.001,-46.9607,0	1/1:45:0,45:0:0:45:1620:-130.304,-13.5464,0	1/1:136:1,135:1:21:135:4836:-384.439,-38.8612,0	1/1:273:0,272:0:0:272:9729:-767.59,-81.8802,0	0/1:171:93,78:93:3320:78:2792:-167.919,0,-244.052	1/1:28:0,28:0:0:28:1008:-79.6861,-8.42884,0	1/1:68:0,68:0:0:68:2420:-196.443,-20.47,0	1/1:34:0,34:0:0:34:1220:-96.7725,-10.235,0	1/1:15:0,15:0:0:15:540:-42.4697,-4.51545,0	1/1:114:0,114:0:0:114:4088:-332.32,-34.3174,0	0/1:86:43,43:43:1540:43:1544:-99.6143,0,-111.981	1/1:212:0,212:0:0:212:7597:-612.716,-63.8184,0	1/1:260:0,259:0:0:259:9285:-738.389,-77.9668,0	1/1:53:0,53:0:0:53:1885:-152.358,-15.9546,0	1/1:139:0,139:0:0:139:5000:-407.188,-41.8432,0	0/1:11:6,5:6:197:5:176:-11.4163,0,-14.6607	1/1:138:0,137:0:0:137:4924:-396.925,-41.2411,0	0/1:201:76,125:76:2712:125:4469:-301.267,0,-181.92	1/1:363:0,362:0:0:362:12996:-1026.8,-108.973,0	1/1:60:0,60:0:0:60:2151:-172.045,-18.0618,0	1/1:77:0,77:0:0:77:2764:-220.36,-23.1793,0	1/1:62:0,62:0:0:62:2224:-175.229,-18.6639,0	1/1:129:1,128:1:36:128:4591:-357.367,-35.2661,0	1/1:26:0,26:0:0:26:936:-76.4451,-7.82678,0	0/1:92:48,44:48:1724:44:1570:-98.9838,0,-125.687	1/1:81:0,81:0:0:81:2911:-236.035,-24.3834,0	0/1:23:7,16:7:248:16:576:-40.1328,0,-14.4114	0/1:74:35,39:35:1244:39:1404:-91.1155,0,-88.6961	0/1:109:74,35:74:2656:35:1247:-66.9262,0,-202.861	1/1:257:1,256:1:32:256:9164:-717.828,-74.1782,0	1/1:107:0,107:0:0:107:3835:-303.006,-32.2102,0
chr08	30627925	.	T	C	16882.5	PASS	AB=0.509844;ABP=4.67754;AC=30;AF=0.159574;AN=188;AO=1018;CIGAR=1X;DP=5493;DPB=5493;DPRA=1.38274;EPP=2204.89;EPPR=9650.96;GTI=2;LEN=1;MEANALT=1.02778;MQM=59.4617;MQMR=59.6386;NS=94;NUMALT=1;ODDS=0.0553071;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36259;QR=159807;RO=4471;RPL=1;RPP=2204.89;RPPR=9650.96;RPR=1017;RUN=1;SAF=0;SAP=2213.57;SAR=1018;SRF=0;SRP=9711.66;SRR=4471;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.275	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:85:40,45:40:1436:45:1604:-118.91,0,-103.919	0/0:164:163,1:163:5825:1:36:0,-45.7706,-520.742	0/1:28:9,19:9:320:19:654:-50.7405,0,-20.7135	0/1:38:30,8:30:1072:8:288:-14.8283,0,-85.3462	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.604	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.487	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.669	0/0:72:71,1:71:2535:1:36:0,-18.0954,-224.759	0/0:63:62,0:62:2207:0:0:0,-18.6639,-198.448	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.597	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.345	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3934	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9369	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4125	0/0:77:76,1:76:2728:1:36:0,-19.581,-242.146	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.896	0/1:169:52,115:52:1868:115:4091:-317.508,0,-117.764	0/0:72:70,2:70:2493:2:72:0,-14.8374,-217.78	0/1:43:25,18:25:885:18:648:-45.7076,0,-66.9977	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.266	0/1:152:81,71:81:2912:71:2527:-181.923,0,-216.553	0/1:135:63,72:63:2233:72:2577:-191.304,0,-160.537	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1137	0/0:159:159,0:159:5646:0:0:0,-47.8638,-507.875	0/0:74:73,1:73:2579:1:36:0,-18.6779,-228.749	0/1:72:43,29:43:1544:29:1036:-71.8513,0,-117.56	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1652	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.31304	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:111:110,0:110:3948:0:0:0,-33.1133,-355.137	0/1:96:50,46:50:1769:46:1628:-117.89,0,-130.575	0/1:33:17,16:17:612:16:567:-41.4135,0,-45.4794	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:70:40,30:40:1415:30:1076:-76.0775,0,-106.57	0/1:17:10,7:10:360:7:248:-17.5288,0,-27.6086	0/0:84:84,0:84:2993:0:0:0,-25.2865,-269.512	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1482	0/1:65:29,36:29:1044:36:1284:-96.2941,0,-74.7055	0/1:71:39,32:39:1388:32:1144:-81.8788,0,-103.75	0/1:109:47,62:47:1684:62:2198:-165.138,0,-119.024	0/0:58:58,0:58:2060:0:0:0,-17.4597,-185.342	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.298	0/0:111:111,0:111:3948:0:0:0,-33.4143,-355.497	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.7923	0/1:73:33,40:33:1165:40:1411:-105.218,0,-83.1622	0/1:44:20,24:20:720:24:864:-64.8372,0,-51.8796	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.2381	0/1:85:57,28:57:2052:28:1004:-64.9938,0,-159.356	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.212	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.045	0/0:75:75,0:75:2657:0:0:0,-22.5772,-239.345	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.446	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:164:79,85:79:2836:85:3029:-223.46,0,-206.097	0/0:135:135,0:135:4828:0:0:0,-40.639,-434.627	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.977	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.905	0/0:97:95,2:95:3404:2:68:0,-22.7422,-300.09	0/1:77:30,47:30:1080:47:1680:-128.308,0,-74.3293	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9332	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.818	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1803	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.068	0/1:44:31,13:31:1100:13:468:-29.2143,0,-86.0648	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.588	0/0:91:91,0:91:3248:0:0:0,-27.3937,-292.528	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.277	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.586	0/1:13:7,6:7:252:6:208:-15.1457,0,-19.1156	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.592	0/1:97:40,57:40:1436:57:2026:-153.34,0,-100.25	0/0:193:193,0:193:6889:0:0:0,-58.0988,-620.019	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.701	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.051	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.612	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:65:35,30:35:1252:30:1076:-77.5683,0,-93.4005	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.871	0/1:21:10,11:10:360:11:392:-29.2984,0,-26.4227	0/1:57:28,29:28:996:29:1027:-75.5835,0,-72.7962	0/1:36:10,26:10:360:26:932:-73.2761,0,-21.9072	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.671	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.465
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chr08	30664496	.	G	C	155221	PASS	AB=0.632953;ABP=326.36;AC=160;AF=0.851064;AN=188;AO=7178;CIGAR=1X;DP=7971;DPB=7971;DPRA=0;EPP=15468.5;EPPR=1694.6;GTI=3;LEN=1;MEANALT=1.10638;MQM=45.8853;MQMR=57.6539;NS=94;NUMALT=1;ODDS=1.99735;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255723;QR=27951;RO=783;RPL=7164;RPP=15468.5;RPPR=1694.6;RPR=14;RUN=1;SAF=0;SAP=15589.8;SAR=7178;SRF=0;SRP=1703.27;SRR=783;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1164:-103.522,-9.93399,0	1/1:142:0,142:0:0:142:5070:-450.308,-42.7463,0	0/1:143:37,106:37:1328:106:3789:-289.989,0,-76.73	1/1:178:0,177:0:0:177:6293:-555.999,-53.2823,0	0/1:48:11,37:11:396:37:1313:-101.48,0,-21.4396	0/1:36:14,22:14:504:22:792:-59.7829,0,-34.815	1/1:63:0,63:0:0:63:2264:-200.573,-18.9649,0	1/1:162:0,162:0:0:162:5769:-513.234,-48.7669,0	1/1:91:0,91:0:0:91:3236:-288.32,-27.3937,0	1/1:82:0,82:0:0:82:2891:-256.696,-24.6845,0	1/1:88:0,88:0:0:88:3110:-276.47,-26.4906,0	1/1:97:0,97:0:0:97:3453:-306.658,-29.1999,0	1/1:70:0,70:0:0:70:2515:-223.137,-21.0721,0	1/1:123:0,123:0:0:123:4397:-389.013,-37.0267,0	1/1:97:0,97:0:0:97:3454:-304.698,-29.1999,0	1/1:88:0,88:0:0:88:3148:-279.396,-26.4906,0	1/1:95:0,95:0:0:95:3388:-300.304,-28.5979,0	1/1:114:1,113:1:21:113:4052:-358.787,-32.2685,0	1/1:50:0,50:0:0:50:1785:-158.503,-15.0515,0	1/1:112:0,112:0:0:112:4028:-356.686,-33.7154,0	1/1:169:0,169:0:0:169:6060:-537.13,-50.8741,0	0/1:49:39,10:39:1388:10:356:-17.3991,0,-110.189	1/1:93:2,91:2:72:91:3230:-279.392,-21.161,0	0/1:92:20,72:20:720:72:2508:-195.064,0,-37.3817	1/1:44:0,44:0:0:44:1561:-139.06,-13.2453,0	0/1:197:73,123:73:2624:123:4406:-330.056,0,-176.866	0/1:131:38,92:38:1360:92:3281:-251.642,0,-83.1081	1/1:34:0,34:0:0:34:1222:-109.079,-10.235,0	1/1:184:0,184:0:0:184:6525:-580.101,-55.3895,0	1/1:143:9,134:9:324:134:4764:-392.724,-13.5451,0	0/1:79:14,64:14:496:64:2281:-178.48,0,-21.1037	1/1:4:0,4:0:0:4:140:-12.8454,-1.20412,0	1/1:18:0,18:0:0:18:644:-56.2586,-5.41854,0	1/1:1:0,1:0:0:1:36:-3.56681,-0.30103,0	1/1:6:0,6:0:0:6:208:-18.738,-1.80618,0	1/1:11:0,11:0:0:11:392:-34.9777,-3.31133,0	1/1:185:0,185:0:0:185:6608:-588.603,-55.6906,0	0/1:125:57,68:57:2027:68:2375:-173.539,0,-145.007	0/1:61:36,24:36:1279:24:864:-58.9783,0,-96.8812	1/1:3:0,3:0:0:3:108:-9.98707,-0.90309,0	0/1:85:35,50:35:1248:50:1769:-131.64,0,-86.8732	0/1:33:18,15:18:648:15:536:-37.7058,0,-48.1744	1/1:153:0,153:0:0:153:5453:-481.464,-46.0576,0	1/1:84:0,84:0:0:84:3017:-265.695,-25.2865,0	1/1:77:0,77:0:0:77:2734:-242.42,-23.1793,0	0/1:46:13,33:13:464:33:1188:-92.1741,0,-28.1961	0/1:72:19,53:19:680:53:1904:-148.088,0,-39.81	0/1:127:48,78:48:1724:78:2715:-202.023,0,-116.306	1/1:91:0,91:0:0:91:3228:-285.917,-27.3937,0	1/1:145:0,145:0:0:145:5189:-459.929,-43.6494,0	1/1:80:0,80:0:0:80:2876:-254.216,-24.0824,0	0/1:8:4,4:4:144:4:144:-10.7586,0,-10.9026	0/1:83:24,59:24:860:59:2124:-164.411,0,-52.6914	0/1:15:4,11:4:144:11:396:-30.8987,0,-8.79184	0/1:3:2,1:2:72:1:36:-2.66372,0,-5.93363	0/1:89:15,74:15:532:74:2637:-207.911,0,-20.3698	1/1:47:0,47:0:0:47:1688:-149.133,-14.1484,0	1/1:9:0,9:0:0:9:324:-29.3022,-2.70927,0	1/1:11:0,11:0:0:11:392:-35.0685,-3.31133,0	1/1:47:0,47:0:0:47:1676:-148.57,-14.1484,0	1/1:109:0,109:0:0:109:3916:-344.941,-32.8123,0	1/1:5:0,5:0:0:5:180:-16.3696,-1.50515,0	0/1:121:58,63:58:2055:63:2252:-163.497,0,-148.366	1/1:115:0,115:0:0:115:4113:-363.191,-34.6185,0	1/1:72:0,72:0:0:72:2567:-228.897,-21.6742,0	1/1:112:0,112:0:0:112:3981:-352.32,-33.7154,0	1/1:130:1,129:1:36:129:4599:-402.383,-35.5366,0	0/1:49:24,25:24:856:25:877:-63.5698,0,-62.5356	1/1:49:0,49:0:0:49:1756:-155.861,-14.7505,0	1/1:52:0,52:0:0:52:1849:-163.704,-15.6536,0	1/1:118:0,118:0:0:118:4193:-372.396,-35.5215,0	1/1:26:0,26:0:0:26:928:-81.6782,-7.82678,0	1/1:73:0,72:0:0:72:2576:-228.443,-21.6742,0	0/1:59:21,38:21:756:38:1364:-103.217,0,-50.6065	1/1:152:0,151:0:0:151:5332:-473.097,-45.4555,0	1/1:143:0,143:0:0:143:5101:-453.167,-43.0473,0	1/1:83:0,83:0:0:83:2941:-261.32,-24.9855,0	1/1:161:0,161:0:0:161:5687:-504.831,-48.4658,0	1/1:7:0,7:0:0:7:252:-22.8276,-2.10721,0	1/1:118:0,118:0:0:118:4219:-373.898,-35.5215,0	0/1:62:6,56:6:207:56:2000:-158.572,0,-0.303034	1/1:128:0,127:0:0:127:4524:-399.688,-38.2308,0	1/1:100:0,100:0:0:100:3528:-311.64,-30.103,0	1/1:116:0,116:0:0:116:4152:-367.407,-34.9195,0	1/1:157:0,156:0:0:156:5556:-487.394,-46.9607,0	1/1:185:0,185:0:0:185:6544:-579.261,-55.6906,0	1/1:51:0,51:0:0:51:1824:-161.931,-15.3525,0	0/1:77:31,46:31:1086:46:1644:-123.202,0,-74.8208	1/1:68:0,68:0:0:68:2411:-213.943,-20.47,0	0/1:56:21,35:21:756:35:1233:-92.8101,0,-51.4569	0/1:85:36,49:36:1281:49:1764:-129.621,0,-89.9785	0/1:75:50,25:50:1791:25:892:-56.414,0,-138.794	1/1:77:1,76:1:36:76:2709:-235.855,-19.582,0	1/1:134:1,133:1:36:133:4753:-414.419,-36.7397,0
chr08	30664515	.	G	A	10807.2	PASS	AB=0.363422;ABP=345.853;AC=28;AF=0.148936;AN=188;AO=783;CIGAR=1X;DP=8031;DPB=8031;DPRA=0.901927;EPP=1694.6;EPPR=15741.8;GTI=3;LEN=1;MEANALT=1;MQM=57.6322;MQMR=45.9179;NS=94;NUMALT=1;ODDS=1.65098;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28007;QR=259528;RO=7248;RPL=782;RPP=1694.6;RPPR=15733.2;RPR=1;RUN=1;SAF=0;SAP=1703.27;SAR=783;SRF=1;SRP=15733.2;SRR=7247;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1132:0:0:0,-9.63296,-101.033	0/0:143:143,0:143:5132:0:0:0,-43.0473,-455.847	0/1:141:104,37:104:3728:37:1311:-75.8007,0,-285.452	0/0:181:181,0:181:6476:0:0:0,-54.4864,-571.649	0/1:46:35,11:35:1244:11:396:-22.0417,0,-96.1426	0/1:35:21,14:21:748:14:504:-35.116,0,-56.2021	0/0:63:63,0:63:2260:0:0:0,-18.9649,-200.234	0/0:164:164,0:164:5884:0:0:0,-49.3689,-523.267	0/0:93:93,0:93:3324:0:0:0,-27.9958,-296.317	0/0:84:84,0:84:3004:0:0:0,-25.2865,-265.711	0/0:93:93,0:93:3340:0:0:0,-27.9958,-296.505	0/0:101:101,0:101:3616:0:0:0,-30.404,-320.166	0/0:74:74,0:74:2660:0:0:0,-22.2762,-235.061	0/0:125:125,0:125:4480:0:0:0,-37.6287,-396.882	0/0:97:97,0:97:3480:0:0:0,-29.1999,-307.58	0/0:90:90,0:90:3240:0:0:0,-27.0927,-286.662	0/0:99:99,0:99:3544:0:0:0,-29.802,-314.017	0/0:114:114,0:114:4096:0:0:0,-34.3174,-363.645	0/0:50:50,0:50:1800:0:0:0,-15.0515,-159.017	0/0:113:113,0:113:4020:0:0:0,-34.0164,-356.029	0/0:172:172,0:172:6132:0:0:0,-51.7772,-543.237	0/1:49:11,38:11:396:38:1360:-107.653,0,-20.6594	0/0:92:90,2:90:3216:2:72:0,-20.8599,-277.179	0/1:91:72,19:72:2584:19:684:-34.4443,0,-202.054	0/0:46:46,0:46:1632:0:0:0,-13.8474,-145.303	0/1:202:126,76:126:4492:76:2715:-183.58,0,-337.237	0/1:129:91,38:91:3272:38:1360:-83.7459,0,-251.182	0/0:35:35,0:35:1256:0:0:0,-10.536,-112.026	0/0:187:187,0:187:6716:0:0:0,-56.2926,-596.283	0/0:144:134,10:134:4808:10:352:0,-11.3349,-393.277	0/1:82:67,15:67:2404:15:536:-23.8228,0,-188.992	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1972	0/0:17:17,0:17:608:0:0:0,-5.11751,-53.8974	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.56681	0/0:6:6,0:6:212:0:0:0,-1.80618,-18.9212	0/0:12:12,0:12:424:0:0:0,-3.61236,-37.8766	0/0:187:187,0:187:6724:0:0:0,-56.2926,-599.133	0/1:125:69,56:69:2468:56:2012:-143.657,0,-181.5	0/1:64:25,39:25:900:39:1400:-106.459,0,-61.344	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.98707	0/1:82:49,33:49:1760:33:1184:-81.9935,0,-131.686	0/1:32:14,18:14:504:18:644:-48.1144,0,-35.3216	0/0:146:146,0:146:5196:0:0:0,-43.9504,-459.494	0/0:85:85,0:85:3036:0:0:0,-25.5875,-268.425	0/0:76:76,0:76:2736:0:0:0,-22.8783,-242.394	0/1:47:34,13:34:1224:13:464:-27.8946,0,-95.0667	0/1:74:54,20:54:1944:20:716:-42.4729,0,-149.844	0/1:126:78,48:78:2776:48:1704:-115.206,0,-207.122	0/0:90:90,0:90:3216:0:0:0,-27.0927,-285.094	0/0:149:149,0:149:5336:0:0:0,-44.8535,-472.188	0/0:83:83,0:83:2984:0:0:0,-24.9855,-263.196	0/1:8:4,4:4:140:4:144:-10.9026,0,-10.4112	0/1:82:60,22:60:2152:22:788:-46.5603,0,-167.252	0/1:14:10,4:10:360:4:144:-9.09287,0,-28.006	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.57282	0/1:90:75,15:75:2688:15:529:-20.3028,0,-211.696	0/0:48:48,0:48:1716:0:0:0,-14.4494,-151.684	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.3022	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.0685	0/0:48:48,0:48:1720:0:0:0,-14.4494,-151.303	0/0:114:114,0:114:4084:0:0:0,-34.3174,-359.952	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.0241	0/1:119:64,55:64:2296:55:1971:-141.364,0,-167.84	0/0:114:114,0:114:4084:0:0:0,-34.3174,-361.16	0/0:73:73,0:73:2616:0:0:0,-21.9752,-233.319	0/0:110:110,0:110:3940:0:0:0,-33.1133,-348.839	0/0:126:125,1:125:4448:1:36:0,-34.3325,-389.186	0/1:51:27,24:27:968:24:859:-62.2145,0,-70.9186	0/0:49:49,0:49:1752:0:0:0,-14.7505,-154.372	0/0:49:49,0:49:1748:0:0:0,-14.7505,-154.751	0/0:118:118,0:118:4224:0:0:0,-35.5215,-375.326	0/0:26:26,0:26:924:0:0:0,-7.82678,-81.3388	0/0:75:75,0:75:2676:0:0:0,-22.5772,-237.978	0/1:59:38,21:38:1364:21:756:-50.6065,0,-103.217	0/0:153:153,0:153:5484:0:0:0,-46.0576,-486.674	0/0:142:142,0:142:5084:0:0:0,-42.7463,-451.598	0/0:81:81,0:81:2908:0:0:0,-24.3834,-258.354	0/0:162:162,0:162:5800:0:0:0,-48.7669,-513.667	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.8276	0/0:116:116,0:116:4172:0:0:0,-34.9195,-369.657	0/1:62:56,6:56:2000:6:216:-1.12665,0,-158.773	0/0:128:128,0:128:4584:0:0:0,-38.5318,-404.668	0/0:101:101,0:101:3624:0:0:0,-30.404,-319.985	0/0:121:121,0:121:4336:0:0:0,-36.4246,-383.699	0/0:154:154,0:154:5496:0:0:0,-46.3586,-483.171	0/0:187:187,0:187:6696:0:0:0,-56.2926,-590.515	0/0:53:53,0:53:1904:0:0:0,-15.9546,-169.004	0/1:78:47,31:47:1676:31:1108:-76.5057,0,-125.682	0/0:71:71,0:71:2540:0:0:0,-21.3731,-223.68	0/1:58:36,22:36:1288:22:792:-54.0929,0,-96.9255	0/1:88:51,37:51:1812:37:1324:-92.9461,0,-133.747	0/1:78:27,51:27:964:51:1818:-140.317,0,-61.9259	0/0:73:72,1:72:2564:1:36:0,-18.3779,-223.734	0/0:140:140,0:140:5028:0:0:0,-42.1442,-442.286
chr08	30712671	.	T	C	20148.7	PASS	AB=0.540663;ABP=34.6215;AC=32;AF=0.170213;AN=188;AO=1198;CIGAR=1X;DP=6404;DPB=6404;DPRA=1.06327;EPP=2604.43;EPPR=11296.8;GTI=0;LEN=1;MEANALT=1.02632;MQM=59.9791;MQMR=59.9944;NS=94;NUMALT=1;ODDS=0.928319;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42421;QR=185429;RO=5205;RPL=1;RPP=2595.76;RPPR=11305.5;RPR=1197;RUN=1;SAF=1;SAP=2595.76;SAR=1197;SRF=1;SRP=11296.8;SRR=5204;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/0:83:83,0:83:2952:0:0:0,-24.9855,-265.912	0/1:69:39,30:39:1387:30:1043:-73.405,0,-104.357	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.961	0/1:50:28,22:28:1004:22:788:-56.1933,0,-75.6244	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/0:50:50,0:50:1758:0:0:0,-15.0515,-158.5	0/0:111:109,2:109:3857:2:72:0,-26.5776,-340.491	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:85:85,0:85:3031:0:0:0,-25.5875,-273.02	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/0:73:73,0:73:2594:0:0:0,-21.9752,-233.708	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/0:73:73,0:73:2589:0:0:0,-21.9752,-233.258	0/0:63:63,0:63:2236:0:0:0,-18.9649,-201.502	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:129:129,0:129:4586:0:0:0,-38.8329,-412.905	0/0:119:119,0:119:4264:0:0:0,-35.8226,-383.938	0/1:82:27,55:27:951:55:1968:-152.711,0,-61.2198	0/0:60:60,0:60:2124:0:0:0,-18.0618,-191.429	0/1:77:43,34:43:1523:34:1183:-83.5918,0,-114.183	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:209:100,109:100:3576:109:3854:-284.139,0,-259.133	0/1:131:64,67:64:2285:67:2373:-174.389,0,-166.475	0/1:29:15,14:15:540:14:487:-35.4285,0,-40.2067	0/0:135:135,0:135:4777:0:0:0,-40.639,-430.086	0/0:77:74,2:74:2629:2:72:0,-16.4014,-230.02	0/1:83:35,48:35:1256:48:1713:-129.469,0,-88.3598	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:174:174,0:174:6214:0:0:0,-52.3792,-559.357	0/1:177:105,72:105:3738:72:2564:-177.726,0,-283.339	0/1:66:38,28:38:1347:28:991:-69.6355,0,-101.661	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:48:23,25:23:820:25:891:-66.0593,0,-59.6731	0/1:54:26,28:26:924:28:972:-71.5336,0,-67.222	0/0:83:83,0:83:2948:0:0:0,-24.9855,-265.553	0/0:82:82,0:82:2915:0:0:0,-24.6845,-262.581	0/0:52:52,0:52:1827:0:0:0,-15.6536,-164.71	0/1:47:12,35:12:423:35:1242:-97.9344,0,-24.2567	0/1:84:47,37:47:1684:37:1297:-91.7424,0,-126.561	0/1:98:41,57:41:1452:57:2027:-153.198,0,-101.475	0/0:79:79,0:79:2809:0:0:0,-23.7814,-253.049	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:98:47,51:47:1654:51:1792:-132.06,0,-119.643	0/1:22:7,15:7:252:15:536:-41.9522,0,-16.4063	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	0/1:85:41,44:41:1464:44:1566:-115.643,0,-106.469	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:65:65,0:65:2248:0:0:0,-19.5669,-202.578	0/0:107:107,0:107:3829:0:0:0,-32.2102,-344.805	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:139:68,71:68:2444:71:2489:-182.416,0,-178.371	0/0:124:124,0:124:4411:0:0:0,-37.3277,-397.162	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.792	0/1:89:14,75:14:496:75:2673:-214.022,0,-18.1826	0/0:26:25,1:25:896:1:36:0,-4.2285,-77.3621	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.786	0/0:67:67,0:67:2361:0:0:0,-20.169,-212.745	0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8116	0/0:72:72,0:72:2570:0:0:0,-21.6742,-231.549	0/1:36:12,24:12:428:24:852:-66.1633,0,-28.0217	0/0:105:104,1:104:3724:1:36:0,-28.0099,-331.763	0/0:90:90,0:90:3215:0:0:0,-27.0927,-289.345	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/1:16:9,7:9:309:7:252:-18.2125,0,-23.3242	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/1:53:19,34:19:684:34:1216:-93.792,0,-45.9357	0/0:163:163,0:163:5840:0:0:0,-49.0679,-525.712	0/0:85:85,0:85:3018:0:0:0,-25.5875,-271.851	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:78:78,0:78:2757:0:0:0,-23.4803,-248.372	0/0:114:113,1:113:4048:1:36:0,-30.7191,-360.909	0/0:50:49,1:49:1739:1:36:0,-11.4532,-153.195	0/1:85:31,54:31:1099:54:1885:-144.337,0,-73.6319	0/0:61:61,0:61:2167:0:0:0,-18.3628,-195.296	0/1:60:25,35:25:900:35:1240:-93.8408,0,-63.2592	0/1:80:33,47:33:1179:47:1675:-126.954,0,-82.3348	0/1:72:27,45:27:952:45:1600:-122.616,0,-64.321	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055
chr08	30801672	.	T	C	17265	PASS	AB=0.558999;ABP=58.6125;AC=32;AF=0.170213;AN=188;AO=1034;CIGAR=1X;DP=5273;DPB=5273;DPRA=1.18662;EPP=2248.31;EPPR=9197.03;GTI=1;LEN=1;MEANALT=1.02632;MQM=59.9942;MQMR=59.9927;NS=94;NUMALT=1;ODDS=0.262872;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36374;QR=149588;RO=4238;RPL=0;RPP=2248.31;RPPR=9205.71;RPR=1034;RUN=1;SAF=0;SAP=2248.31;SAR=1034;SRF=1;SRP=9197.03;SRR=4237;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:57:57,0:57:1984:0:0:0,-17.1587,-178.832	0/0:31:31,0:31:1092:0:0:0,-9.33193,-98.5896	0/1:87:39,48:39:1387:48:1704:-127.456,0,-98.9385	0/0:96:96,0:96:3395:0:0:0,-28.8989,-305.765	0/1:65:41,24:41:1428:24:860:-58.1549,0,-109.246	0/1:39:23,16:23:816:16:550:-38.0832,0,-62.0215	0/0:48:48,0:48:1699:0:0:0,-14.4494,-153.195	0/0:59:59,0:59:2080:0:0:0,-17.7608,-187.468	0/0:149:148,1:148:5222:1:36:0,-41.2552,-466.528	0/0:47:47,0:47:1655:0:0:0,-14.1484,-149.223	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:78:78,0:78:2734:0:0:0,-23.4803,-246.302	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.911	0/0:68:68,0:68:2393:0:0:0,-20.47,-215.627	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:60:60,0:60:2067:0:0:0,-18.0618,-186.299	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8767	0/0:66:66,0:66:2327:0:0:0,-19.868,-209.691	0/0:167:167,0:167:5849:0:0:0,-50.272,-526.531	0/1:63:15,48:15:536:48:1692:-133.599,0,-29.6099	0/0:72:71,1:71:2503:1:27:0,-18.9744,-222.821	0/1:37:24,13:24:844:13:464:-30.9594,0,-65.1408	0/0:77:76,1:76:2689:1:27:0,-20.4795,-239.555	0/1:164:68,96:68:2407:96:3423:-258.915,0,-167.518	0/1:118:63,55:63:2214:55:1933:-138.721,0,-164.003	0/1:18:10,8:10:352:8:275:-19.6649,0,-26.5997	0/0:94:94,0:94:3321:0:0:0,-28.2968,-299.11	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.726	0/1:59:30,29:30:1051:29:1031:-75.3372,0,-77.1387	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.53273	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:4:4,0:4:121:0:0:0,-1.20412,-11.1896	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:124:124,0:124:4371:0:0:0,-37.3277,-393.568	0/1:53:10,43:10:352:43:1528:-121.859,0,-16.0636	0/1:36:18,18:18:648:18:635:-46.6399,0,-47.8148	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:41:18,23:18:639:23:811:-60.9677,0,-45.496	0/1:20:6,14:6:212:14:487:-38.1386,0,-13.4042	0/0:100:100,0:100:3558:0:0:0,-30.103,-320.429	0/0:26:26,0:26:914:0:0:0,-7.82678,-82.5747	0/0:38:38,0:38:1325:0:0:0,-11.4391,-119.547	0/1:115:54,61:54:1891:61:2133:-157.617,0,-135.847	0/1:78:30,48:30:1028:48:1686:-128.545,0,-69.3448	0/1:95:40,55:40:1423:55:1951:-147.267,0,-99.7689	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.701	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:57:57,0:57:2027:0:0:0,-17.1587,-182.702	0/1:7:1,6:1:36:6:207:-16.8597,0,-1.49106	0/1:72:30,42:30:1042:42:1465:-110.468,0,-72.4138	0/1:34:17,17:17:594:17:608:-44.817,0,-43.5506	0/1:12:4,8:4:140:8:288:-22.655,0,-9.33222	0/1:59:32,27:32:1144:27:915:-64.8934,0,-85.5087	0/0:52:52,0:52:1843:0:0:0,-15.6536,-166.15	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:76:76,0:76:2654:0:0:0,-22.8783,-239.109	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/1:106:40,66:40:1416:66:2326:-177.688,0,-95.8282	0/0:92:92,0:92:3233:0:0:0,-27.6948,-291.195	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/0:87:87,0:87:3084:0:0:0,-26.1896,-277.79	0/1:125:46,78:46:1639:78:2739:-209.065,0,-110.11	0/0:15:15,0:15:523:0:0:0,-4.51545,-47.3985	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:34:34,0:34:1192:0:0:0,-10.235,-107.585	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:122:122,0:122:4291:0:0:0,-36.7257,-386.375	0/1:54:29,25:29:1023:25:879:-63.1712,0,-76.1261	0/0:173:173,0:173:6135:0:0:0,-52.0782,-552.254	0/0:84:83,1:83:2947:1:27:0,-22.5867,-262.765	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/0:42:41,1:41:1452:1:36:0,-9.04498,-127.378	0/1:16:3,13:3:104:13:468:-37.6432,0,-4.88633	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:76:29,47:29:1028:47:1638:-124.825,0,-69.9548	0/0:89:88,1:88:3121:1:36:0,-23.1934,-277.519	0/0:45:45,0:45:1567:0:0:0,-13.5463,-141.32	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:37:37,0:37:1290:0:0:0,-11.1381,-116.399	0/0:87:87,0:87:3028:0:0:0,-26.1896,-272.751	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:48:23,25:23:807:25:853:-62.6307,0,-58.4997	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.536	0/1:24:9,15:9:315:15:521:-39.9916,0,-21.4625	0/1:61:35,26:35:1256:26:917:-64.4818,0,-94.9825	0/1:46:19,27:19:676:27:946:-71.6055,0,-47.3206	0/0:59:59,0:59:2077:0:0:0,-17.7608,-187.199	0/0:65:65,0:65:2285:0:0:0,-19.5669,-205.911
chr08	30801693	.	C	T	100222	PASS	AB=0.444268;ABP=54.0806;AC=156;AF=0.829787;AN=188;AO=4455;CIGAR=1X;DP=5514;DPB=5514;DPRA=0;EPP=9095.29;EPPR=2184.56;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9843;MQMR=59.9943;NS=94;NUMALT=1;ODDS=0.424883;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159487;QR=37775;RO=1056;RPL=4388;RPP=9103.72;RPPR=2184.56;RPR=67;RUN=1;SAF=1;SAP=9668.24;SAR=4454;SRF=0;SRP=2296.09;SRR=1056;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:88:50,38:50:1792:38:1364:-96.5701,0,-135.072	1/1:99:0,99:0:0:99:3549:-319.617,-29.802,0	0/1:69:28,41:28:1008:41:1476:-112.365,0,-70.2653	0/1:41:16,25:16:576:25:892:-68.2569,0,-39.8328	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	1/1:158:0,158:0:0:158:5646:-508.259,-47.5627,0	1/1:53:0,53:0:0:53:1900:-171.264,-15.9546,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:84:0,84:0:0:84:3004:-270.592,-25.2865,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:69:0,69:0:0:69:2468:-222.374,-20.7711,0	1/1:181:0,181:0:0:181:6504:-585.441,-54.4864,0	0/1:65:49,16:49:1760:16:576:-32.608,0,-139.117	1/1:75:1,74:1:27:74:2652:-236.226,-19.8775,0	0/1:39:13,26:13:464:26:928:-72.0981,0,-30.3573	1/1:81:1,80:1:36:80:2859:-253.95,-20.7852,0	0/1:174:100,74:100:3579:74:2633:-184.837,0,-269.937	0/1:121:53,68:53:1891:68:2423:-181.899,0,-134.043	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	1/1:104:0,104:0:0:104:3732:-336.08,-31.3071,0	1/1:80:0,80:0:0:80:2829:-254.849,-24.0824,0	0/1:62:31,31:31:1116:31:1105:-81.0964,0,-82.0832	0/1:9:6,3:6:208:3:99:-6.50773,0,-16.3498	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:13:0,13:0:0:13:460:-41.7348,-3.91339,0	1/1:132:0,132:0:0:132:4720:-424.957,-39.736,0	0/1:57:46,11:46:1656:11:396:-18.824,0,-132.17	0/1:38:18,20:18:648:20:716:-53.3286,0,-47.2127	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:41:23,18:23:828:18:644:-45.9484,0,-62.5019	0/1:21:15,6:15:523:6:216:-13.4689,0,-41.0768	1/1:105:0,105:0:0:105:3717:-334.73,-31.6082,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:41:0,41:0:0:41:1461:-131.785,-12.3422,0	0/1:118:61,57:61:2155:57:2040:-148.35,0,-158.696	0/1:74:45,29:45:1616:29:1027:-70.466,0,-123.454	0/1:100:57,43:57:2033:43:1540:-108.79,0,-153.137	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:26:0,26:0:0:26:921:-83.2052,-7.82678,0	1/1:61:0,61:0:0:61:2172:-195.744,-18.3628,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:72:42,30:42:1504:30:1080:-75.8391,0,-113.98	0/1:34:17,17:17:612:17:612:-45.1784,0,-45.1784	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	0/1:61:28,33:28:992:33:1188:-88.8658,0,-71.2316	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,8:0:0:8:288:-26.0408,-2.40824,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:109:66,43:66:2364:43:1521:-104.367,0,-180.206	1/1:98:0,98:0:0:98:3504:-315.571,-29.5009,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:27:0,27:0:0:27:953:-86.0833,-8.12781,0	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	0/1:126:79,47:79:2815:47:1684:-113.917,0,-215.66	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:135:0,135:0:0:135:4817:-433.685,-40.6391,0	0/1:56:27,29:27:972:29:1036:-76.6962,0,-70.9402	1/1:183:0,183:0:0:183:6549:-589.489,-55.0885,0	1/1:85:1,84:1:36:84:3005:-267.083,-21.9893,0	1/1:79:0,78:0:0:78:2804:-252.239,-23.4803,0	1/1:46:1,45:1:36:45:1616:-142.132,-10.2491,0	0/1:16:13,3:13:464:3:108:-5.25869,0,-37.281	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:79:50,29:50:1788:29:1040:-70.133,0,-137.421	1/1:91:1,90:1:36:90:3224:-286.784,-23.7955,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:38:0,38:0:0:38:1366:-123.241,-11.4391,0	1/1:91:0,91:0:0:91:3268:-294.069,-27.3937,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:50:26,24:26:932:24:860:-62.6703,0,-69.1474	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:26:16,9:16:572:9:324:-21.6203,0,-43.928	0/1:62:26,36:26:936:36:1296:-98.2801,0,-65.8956	0/1:46:27,19:27:972:19:684:-48.0429,0,-73.9505	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0
chr08	30872665	.	T	C	73436.5	PASS	AB=0.54677;ABP=115.944;AC=32;AF=0.172043;AN=186;AO=3263;CIGAR=1X;DP=13356;DPB=13356;DPRA=1.70215;EPP=839.284;EPPR=9878.45;GTI=8;LEN=1;MEANALT=1.1;MQM=59.9203;MQMR=59.9832;NS=93;NUMALT=1;ODDS=1.56753;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115643;QR=361042;RO=10081;RPL=2192;RPP=839.284;RPPR=9878.45;RPR=1071;RUN=1;SAF=3263;SAP=7088.52;SAR=0;SRF=10081;SRP=21893.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:156:156,0:156:5604:0:0:0,-46.9607,-504.374	0/1:402:189,213:189:6774:213:7578:-561.048,0,-488.716	0/0:330:330,0:330:11808:0:0:0,-99.3399,-1062.58	0/1:119:56,63:56:2012:63:2223:-164.511,0,-145.496	0/1:115:50,65:50:1783:65:2305:-172.934,0,-126.134	0/0:219:219,0:219:7820:0:0:0,-65.9256,-703.829	0/0:155:155,0:155:5546:0:0:0,-46.6596,-497.837	0/0:104:103,1:103:3682:1:36:0,-27.7088,-327.984	0/0:62:61,0:61:2175:0:0:0,-18.3628,-195.784	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.512	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:98:98,0:98:3509:0:0:0,-29.5009,-316.018	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.275	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.772	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:218:216,1:216:7739:1:36:0,-62.0851,-692.942	0/0:161:161,0:161:5729:0:0:0,-48.4658,-515.729	0/1:1111:374,734:374:13410:734:26074:-2011.99,0,-872.765	0/0:123:122,1:122:4380:1:32:0,-33.8274,-391.173	0/1:150:86,64:86:3088:64:2223:-155.175,0,-232.993	0/0:113:113,0:113:4018:0:0:0,-34.0164,-361.81	0/1:376:210,166:210:7539:166:5879:-416.036,0,-565.254	0/1:283:126,157:126:4508:157:5570:-416.226,0,-320.697	0/1:62:34,28:34:1224:28:971:-69.0345,0,-91.8032	0/0:426:426,0:426:15269:0:0:0,-128.239,-1373.9	0/0:156:154,2:154:5492:2:72:0,-40.124,-487.57	0/1:156:85,71:85:3042:71:2528:-180.812,0,-227.048	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:243:242,0:242:8637:0:0:0,-72.8493,-777.1	0/1:182:109,73:109:3903:73:2597:-179.189,0,-296.675	0/1:78:35,43:35:1260:43:1514:-113.071,0,-90.2251	.:.:.:.:.:.:.:.	0/1:329:160,168:160:5752:168:5963:-437.725,0,-418.735	0/1:45:26,19:26:936:19:658:-45.9949,0,-71.0131	0/0:195:194,1:194:6959:1:36:0,-55.1026,-622.774	0/0:110:110,0:110:3943:0:0:0,-33.1133,-355.061	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.647	0/1:106:51,55:51:1836:55:1930:-142.066,0,-133.611	0/1:172:77,95:77:2748:95:3376:-252.196,0,-195.786	0/1:198:82,115:82:2918:115:4055:-305.51,0,-203.29	0/0:130:130,0:130:4663:0:0:0,-39.1339,-419.83	0/0:141:141,0:141:5060:0:0:0,-42.4452,-455.544	0/0:201:201,0:201:7205:0:0:0,-60.507,-648.501	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:803:363,440:363:12998:440:15637:-1165.31,0,-927.902	0/1:67:18,49:18:648:49:1711:-134.104,0,-38.4829	0/1:15:11,4:11:388:4:144:-8.79817,0,-30.7419	0/1:182:103,79:103:3669:79:2767:-194.484,0,-275.621	0/0:57:57,0:57:2018:0:0:0,-17.1587,-181.892	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.835	0/0:113:112,1:112:4019:1:36:0,-30.4181,-358.299	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/1:222:101,121:101:3615:121:4266:-317.29,0,-258.726	0/0:297:295,0:295:10563:0:0:0,-88.8038,-950.218	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:165:165,0:165:5911:0:0:0,-49.6699,-532.098	0/0:204:203,1:203:7283:1:36:0,-57.8118,-651.92	0/1:238:81,157:81:2900:157:5601:-432.565,0,-189.591	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:77:77,0:77:2759:0:0:0,-23.1793,-248.551	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/1:59:39,20:39:1391:20:699:-45.4705,0,-107.727	0/0:151:151,0:151:5380:0:0:0,-45.4555,-484.331	0/0:212:211,0:211:7579:0:0:0,-63.5173,-681.825	0/0:137:136,1:136:4884:1:36:0,-37.6428,-436.112	0/0:170:170,0:170:6107:0:0:0,-51.1751,-549.727	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:224:224,0:224:8043:0:0:0,-67.4307,-723.885	0/1:189:98,91:98:3516:91:3221:-233.217,0,-259.755	0/0:313:312,1:312:11187:1:36:0,-90.6241,-1003.12	0/0:115:115,0:115:4088:0:0:0,-34.6184,-368.103	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:117:116,0:116:4159:0:0:0,-34.9195,-374.132	0/0:170:170,0:170:6088:0:0:0,-51.1751,-548.019	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:88:54,34:54:1935:34:1207:-82.4446,0,-147.935	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:31:10,21:10:341:21:756:-59.0329,0,-21.6858	0/1:58:26,32:26:932:32:1140:-85.4495,0,-66.7391	0/1:92:27,65:27:972:65:2298:-179.384,0,-60.1031	0/0:156:156,0:156:5596:0:0:0,-46.9607,-503.761	0/0:135:135,0:135:4856:0:0:0,-40.639,-437.191
chr08	30872670	.	A	T	56609.2	PASS	AB=0.546154;ABP=113.655;AC=32;AF=0.172043;AN=186;AO=3279;CIGAR=1X;DP=13504;DPB=13504;DPRA=1.71208;EPP=7105.91;EPPR=22152.1;GTI=8;LEN=1;MEANALT=1.02564;MQM=59.9366;MQMR=59.9761;NS=93;NUMALT=1;ODDS=0.996501;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116923;QR=366816;RO=10224;RPL=3277;RPP=7105.91;RPPR=22152.1;RPR=2;RUN=1;SAF=3279;SAP=7123.27;SAR=0;SRF=10224;SRP=22204.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:49:49,0:49:1764:0:0:0,-14.7505,-157.68	0/0:158:158,0:158:5646:0:0:0,-47.5627,-508.258	0/1:403:193,210:193:6909:210:7513:-554.896,0,-500.56	0/0:333:333,0:333:11949:0:0:0,-100.243,-1075.26	0/1:117:56,61:56:1997:61:2176:-160.885,0,-144.753	0/1:109:50,59:50:1792:59:2099:-156.367,0,-128.75	0/0:220:220,0:220:7866:0:0:0,-66.2266,-707.964	0/0:161:161,0:161:5753:0:0:0,-48.4658,-516.459	0/0:108:107,1:107:3832:1:36:0,-28.913,-341.45	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.317	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/0:98:98,0:98:3528:0:0:0,-29.5009,-317.728	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:219:218,1:218:7816:1:36:0,-62.3273,-699.869	0/0:168:168,0:168:6028:0:0:0,-50.573,-542.622	0/1:1129:381,748:381:13677:748:26670:-2059.66,0,-890.841	0/0:126:125,1:125:4469:1:36:0,-34.3315,-398.78	0/1:154:88,66:88:3164:66:2356:-165.934,0,-238.625	0/0:114:114,0:114:4088:0:0:0,-34.3174,-368.105	0/1:380:211,169:211:7569:169:6038:-429.132,0,-566.748	0/1:287:127,160:127:4552:160:5702:-426.904,0,-323.45	0/1:62:33,29:33:1184:29:1040:-75.2505,0,-88.2045	0/0:431:431,0:431:15461:0:0:0,-129.744,-1391.17	0/0:161:159,2:159:5694:2:72:0,-41.6291,-505.74	0/1:160:90,70:90:3223:70:2472:-174.564,0,-242.127	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:247:247,0:247:8880:0:0:0,-74.3544,-799.179	0/1:183:109,74:109:3912:74:2630:-181.848,0,-297.184	0/1:79:35,44:35:1260:44:1576:-118.35,0,-89.9241	.:.:.:.:.:.:.:.	0/1:335:162,173:162:5828:173:6156:-453.291,0,-423.784	0/1:45:27,18:27:972:18:643:-44.654,0,-74.2516	0/0:197:196,1:196:7044:1:36:0,-55.7046,-630.262	0/0:114:114,0:114:4091:0:0:0,-34.3174,-368.374	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:109:55,54:55:1980:54:1931:-141.254,0,-145.662	0/1:170:76,93:76:2701:93:3285:-244.567,0,-192.1	0/1:194:83,111:83:2972:111:3941:-296.405,0,-209.312	0/0:134:134,0:134:4801:0:0:0,-40.338,-432.243	0/0:142:142,0:142:5104:0:0:0,-42.7463,-459.501	0/0:199:199,0:199:7137:0:0:0,-59.905,-642.384	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:798:362,436:362:12969:436:15596:-1163.11,0,-926.794	0/1:66:18,48:18:648:48:1718:-135.037,0,-38.7839	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/1:182:101,81:101:3624:81:2899:-206.358,0,-271.577	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.174	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.824	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:223:100,123:100:3596:123:4380:-327.24,0,-256.715	0/0:303:303,0:303:10864:0:0:0,-91.2121,-977.654	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/0:165:165,0:165:5924:0:0:0,-49.6699,-533.266	0/0:209:208,1:208:7472:1:36:0,-59.317,-668.922	0/1:234:81,153:81:2901:153:5451:-420.277,0,-190.883	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:62:40,22:40:1440:22:771:-51.0452,0,-111.234	0/0:155:155,0:155:5567:0:0:0,-46.6596,-501.017	0/0:211:211,0:211:7580:0:0:0,-63.5173,-682.235	0/0:141:139,2:139:4996:2:72:0,-35.6085,-442.949	0/0:172:172,0:172:6154:0:0:0,-51.7772,-553.955	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/0:227:227,0:227:8151:0:0:0,-68.3338,-733.601	0/1:189:97,92:97:3484:92:3304:-240.683,0,-256.876	0/0:322:321,1:321:11512:1:36:0,-93.3334,-1032.35	0/0:116:116,0:116:4172:0:0:0,-34.9195,-375.66	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:117:117,0:117:4208:0:0:0,-35.2205,-378.899	0/0:175:175,0:175:6288:0:0:0,-52.6802,-566.01	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:94:57,37:57:2048:37:1328:-91.5254,0,-156.295	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:33:10,23:10:360:23:813:-63.5528,0,-22.8103	0/1:59:24,35:24:864:35:1252:-95.2243,0,-60.3218	0/1:93:28,65:28:1008:65:2287:-178.09,0,-63.0406	0/0:156:156,0:156:5597:0:0:0,-46.9607,-503.849	0/0:140:140,0:140:5024:0:0:0,-42.1442,-452.305
chr08	30884234	.	A	G	286482	PASS	AB=0.5335;ABP=38.0732;AC=151;AF=0.803191;AN=188;AO=10431;CIGAR=1X;DP=12518;DPB=12518;DPRA=1.61096;EPP=22653.6;EPPR=4515.33;GTI=0;LEN=1;MEANALT=1.09677;MQM=59.3733;MQMR=59.5462;NS=94;NUMALT=1;ODDS=0.849804;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=368107;QR=73809;RO=2078;RPL=4668;RPP=252.617;RPPR=112.708;RPR=5763;RUN=1;SAF=4668;SAP=252.617;SAR=5763;SRF=1201;SRP=112.708;SRR=877;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:77:0,77:0:0:77:2698:-242.765,-23.1793,0	1/1:167:0,166:0:0:166:5910:-531.492,-49.971,0	0/1:158:61,97:61:2168:97:3460:-263.408,0,-147.779	1/1:209:0,209:0:0:209:7436:-668.156,-62.9153,0	0/1:82:33,49:33:1161:49:1748:-132.852,0,-80.1099	0/1:55:21,34:21:752:34:1216:-93.1842,0,-51.4286	1/1:143:0,143:0:0:143:5039:-453.602,-43.0473,0	1/1:207:0,206:0:0:206:7287:-655.268,-62.0122,0	1/1:168:0,168:0:0:168:5944:-534.808,-50.573,0	1/1:101:0,101:0:0:101:3568:-321.319,-30.404,0	1/1:106:0,106:0:0:106:3757:-337.954,-31.9092,0	1/1:175:0,175:0:0:175:6119:-550.475,-52.6803,0	1/1:180:1,179:1:36:179:6304:-563.565,-50.5871,0	1/1:124:0,124:0:0:124:4312:-388.129,-37.3277,0	1/1:161:0,161:0:0:161:5712:-514.07,-48.4658,0	1/1:126:0,126:0:0:126:4420:-397.661,-37.9298,0	1/1:132:0,132:0:0:132:4669:-420.223,-39.736,0	1/1:89:0,88:0:0:88:3110:-279.733,-26.4906,0	1/1:92:0,92:0:0:92:3240:-291.635,-27.6948,0	1/1:158:0,158:0:0:158:5590:-503.026,-47.5627,0	1/1:261:0,261:0:0:261:9268:-833.712,-78.5688,0	0/1:54:39,15:39:1392:15:536:-32.3192,0,-109.323	1/1:159:0,159:0:0:159:5648:-508.363,-47.8638,0	0/1:126:42,84:42:1480:84:2956:-227.981,0,-95.562	1/1:117:1,116:1:36:116:4064:-362.239,-31.6222,0	0/1:245:125,120:125:4418:120:4244:-308.313,0,-324.036	0/1:285:140,145:140:4995:145:5067:-370.229,0,-363.796	0/1:65:24,41:24:856:41:1459:-112.038,0,-57.7942	1/1:196:2,194:2:72:194:6861:-610.576,-52.1652,0	1/1:69:3,66:3:99:66:2360:-203.401,-11.5455,0	0/1:226:91,135:91:3248:135:4795:-363.327,0,-224.505	0/0:85:79,6:79:2808:6:212:0,-6.16275,-233.508	1/1:34:1,33:1:32:33:1180:-102.571,-7.03571,0	0/0:83:83,0:83:2949:0:0:0,-24.9855,-265.515	1/1:7:0,7:0:0:7:237:-21.5689,-2.10721,0	1/1:15:0,15:0:0:15:536:-48.5703,-4.51545,0	1/1:483:0,482:0:0:482:16931:-1521.82,-145.096,0	0/1:103:51,51:51:1828:51:1772:-128.691,0,-133.694	0/1:141:82,59:82:2924:59:2108:-147.423,0,-220.82	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	0/1:106:49,57:49:1760:57:2031:-150.889,0,-126.764	0/1:70:33,37:33:1173:37:1268:-93.2902,0,-84.7715	1/1:269:1,268:1:36:268:9483:-849.217,-77.3788,0	1/1:181:0,181:0:0:181:6343:-570.679,-54.4864,0	1/1:143:0,143:0:0:143:4949:-445.473,-43.0473,0	0/1:97:33,64:33:1180:64:2267:-175.093,0,-77.3068	0/1:146:60,86:60:2139:86:3056:-231.123,0,-148.509	0/1:174:63,111:63:2229:111:3921:-300.544,0,-148.48	1/1:119:0,119:0:0:119:4206:-378.686,-35.8226,0	1/1:127:0,127:0:0:127:4454:-399.479,-38.2308,0	1/1:170:2,168:2:72:168:5957:-529.349,-44.3384,0	0/0:103:96,6:96:3412:6:216:0,-11.2806,-287.491	0/1:137:62,74:62:2212:74:2626:-194.236,0,-157.946	0/1:54:28,26:28:1000:26:928:-67.565,0,-73.9502	0/1:53:45,8:45:1574:8:284:-9.94754,0,-125.794	0/1:111:45,66:45:1587:66:2340:-177.044,0,-109.507	1/1:62:0,62:0:0:62:2194:-197.663,-18.6639,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:28:0,28:0:0:28:967:-87.3292,-8.42884,0	1/1:124:0,124:0:0:124:4380:-393.702,-37.3277,0	1/1:178:1,177:1:36:177:6149:-549.794,-49.9851,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:139:56,83:56:2008:83:2916:-220.805,0,-139.147	1/1:112:0,112:0:0:112:3979:-357.676,-33.7154,0	1/1:69:0,69:0:0:69:2451:-220.243,-20.7711,0	1/1:95:0,95:0:0:95:3363:-302.766,-28.5979,0	1/1:226:3,223:3:108:223:7902:-700.429,-57.9576,0	0/1:127:68,59:68:2428:59:2079:-149.08,0,-180.529	1/1:77:0,77:0:0:77:2722:-245.17,-23.1793,0	1/1:98:0,98:0:0:98:3456:-310.262,-29.5009,0	1/1:162:0,162:0:0:162:5684:-511.452,-48.7669,0	1/1:27:0,27:0:0:27:955:-86.0492,-8.12781,0	1/1:63:0,63:0:0:63:2223:-200.216,-18.9649,0	0/1:112:34,78:34:1191:78:2768:-215.304,0,-73.7563	1/1:280:0,280:0:0:280:9934:-893.731,-84.2884,0	1/1:165:1,163:1:36:163:5830:-521.105,-46.1305,0	1/1:113:0,113:0:0:113:4007:-360.723,-34.0164,0	1/1:148:1,147:1:36:147:5219:-466.228,-40.9542,0	0/0:134:126,8:126:4460:8:288:0,-14.1773,-374.084	1/1:142:0,142:0:0:142:5005:-449.871,-42.7463,0	0/1:120:51,69:51:1792:69:2424:-182.278,0,-125.436	1/1:242:0,242:0:0:242:8554:-769.494,-72.8493,0	1/1:155:1,154:1:36:154:5406:-482.954,-43.0614,0	1/1:120:0,120:0:0:120:4236:-381.339,-36.1236,0	1/1:210:0,210:0:0:210:7333:-659.952,-63.2163,0	1/1:280:0,279:0:0:279:9776:-879.085,-83.9874,0	1/1:82:0,82:0:0:82:2877:-258.895,-24.6845,0	0/1:151:72,79:72:2559:79:2762:-203.26,0,-185.07	1/1:155:0,155:0:0:155:5464:-491.604,-46.6597,0	0/1:146:94,52:94:3334:52:1847:-122.506,0,-256.271	0/1:150:77,73:77:2740:73:2579:-187.074,0,-201.462	0/1:157:94,63:94:3309:63:2251:-155.514,0,-250.582	1/1:72:0,72:0:0:72:2564:-230.982,-21.6742,0	1/1:245:0,245:0:0:245:8574:-771.642,-73.7524,0
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chr08	30889029	.	T	A	20245.5	PASS	AB=0.498601;ABP=3.05284;AC=34;AF=0.182796;AN=186;AO=1260;CIGAR=1X;DP=7655;DPB=7655;DPRA=0.992191;EPP=2739.07;EPPR=13885.2;GTI=1;LEN=1;MEANALT=1.05556;MQM=59.5238;MQMR=59.9859;NS=93;NUMALT=1;ODDS=0.202169;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44300;QR=224173;RO=6393;RPL=0;RPP=2739.07;RPPR=13885.2;RPR=1260;RUN=1;SAF=0;SAP=2739.07;SAR=1260;SRF=0;SRP=13885.2;SRR=6393;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/0:85:85,0:85:2948:0:0:0,-25.5875,-265.553	0/1:64:29,35:29:989:35:1196:-88.6651,0,-70.048	0/0:145:145,0:145:5080:0:0:0,-43.6493,-457.352	0/1:28:18,10:18:635:10:352:-23.5894,0,-49.0481	0/1:28:11,17:11:392:17:600:-45.9004,0,-27.1912	0/0:123:123,0:123:4269:0:0:0,-37.0267,-384.393	0/0:143:143,0:143:4986:0:0:0,-43.0473,-448.89	0/0:84:84,0:84:2901:0:0:0,-25.2865,-261.326	0/0:109:109,0:109:3819:0:0:0,-32.8123,-343.907	0/0:95:95,0:95:3379:0:0:0,-28.5978,-304.327	0/0:70:70,0:70:2463:0:0:0,-21.0721,-221.923	0/0:86:86,0:86:2993:0:0:0,-25.8886,-269.603	0/0:94:94,0:94:3314:0:0:0,-28.2968,-298.481	0/0:70:70,0:70:2464:0:0:0,-21.0721,-222.013	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.554	0/0:75:75,0:75:2659:0:0:0,-22.5772,-239.557	0/0:83:83,0:83:2887:0:0:0,-24.9855,-260.061	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:137:137,0:137:4840:0:0:0,-41.2411,-435.759	0/0:106:106,0:106:3714:0:0:0,-31.9092,-334.465	0/1:88:38,50:38:1329:50:1742:-130.572,0,-93.4171	0/0:40:40,0:40:1382:0:0:0,-12.0412,-124.673	0/1:106:48,58:48:1690:58:2057:-153.416,0,-120.476	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/1:220:136,84:136:4749:84:2941:-198.669,0,-361.348	0/1:45:24,21:24:816:21:715:-51.0773,0,-60.1956	0/1:41:19,22:19:672:22:780:-57.9378,0,-48.4646	0/0:136:136,0:136:4771:0:0:0,-40.9401,-429.555	0/0:129:126,3:126:4424:3:104:0,-29.1301,-388.631	0/1:92:42,50:42:1455:50:1767:-131.349,0,-103.546	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:2:1,1:1:27:1:36:-2.99621,0,-2.09772	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:190:190,0:190:6716:0:0:0,-57.1957,-604.524	0/1:157:72,85:72:2523:85:2998:-222.777,0,-180.057	0/1:71:45,26:45:1595:26:907:-60.5549,0,-122.466	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:121:50,71:50:1757:71:2515:-190.149,0,-121.987	0/1:51:25,26:25:839:26:920:-67.7352,0,-60.4621	0/0:93:93,0:93:3231:0:0:0,-27.9958,-291.011	0/0:100:100,0:100:3529:0:0:0,-30.103,-317.799	0/0:71:71,0:71:2510:0:0:0,-21.3731,-226.152	0/1:85:48,37:48:1699:37:1307:-92.335,0,-127.608	0/1:99:46,53:46:1590:53:1850:-136.952,0,-113.584	0/1:123:64,59:64:2217:59:2084:-150.746,0,-162.766	0/0:126:126,0:126:4420:0:0:0,-37.9298,-397.979	0/0:107:107,0:107:3707:0:0:0,-32.2102,-333.833	0/0:100:100,0:100:3506:0:0:0,-30.103,-315.753	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:294:145,149:145:5082:149:5202:-379.79,0,-369.025	0/1:58:29,28:29:983:28:995:-72.3375,0,-71.2542	0/1:15:5,10:5:180:10:360:-28.2172,0,-12.0366	0/1:77:34,43:34:1200:43:1516:-113.515,0,-85.1263	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	.:.:.:.:.:.:.:.	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:112:112,0:112:3923:0:0:0,-33.7154,-353.266	0/0:126:126,0:126:4461:0:0:0,-37.9298,-401.65	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:186:94,91:94:3246:91:3223:-234.211,0,-236.312	0/0:157:157,0:157:5466:0:0:0,-47.2617,-492.075	0/0:116:116,0:116:4055:0:0:0,-34.9195,-365.139	0/0:38:38,0:38:1292:0:0:0,-11.4391,-116.571	0/0:93:92,1:92:3255:1:36:0,-24.3975,-289.575	0/1:77:27,50:27:933:50:1780:-137.245,0,-61.1013	0/0:46:46,0:46:1604:0:0:0,-13.8474,-144.647	0/0:59:59,0:59:2058:0:0:0,-17.7608,-185.488	0/0:105:105,0:105:3720:0:0:0,-31.6081,-335.002	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:70:70,0:70:2460:0:0:0,-21.0721,-221.654	0/1:42:24,18:24:844:18:640:-45.2861,0,-63.6324	0/0:164:164,0:164:5738:0:0:0,-49.3689,-516.488	0/0:112:111,1:111:3883:1:36:0,-30.1171,-346.069	0/0:77:77,0:77:2724:0:0:0,-23.1793,-245.398	0/0:108:106,2:106:3727:2:72:0,-25.6745,-328.797	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/0:98:98,0:98:3427:0:0:0,-29.5009,-308.645	0/1:61:35,26:35:1209:26:907:-63.5701,0,-90.748	0/0:170:170,0:170:5944:0:0:0,-51.1751,-535.076	0/0:79:79,0:79:2808:0:0:0,-23.7814,-252.961	0/0:77:77,0:77:2705:0:0:0,-23.1793,-243.695	0/0:102:102,0:102:3610:0:0:0,-30.7051,-325.108	0/0:133:133,0:133:4673:0:0:0,-40.037,-420.737	0/0:25:25,0:25:879:0:0:0,-7.52575,-79.4268	0/1:59:34,25:34:1192:25:888:-62.4701,0,-89.8216	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.86	0/1:45:25,20:25:884:20:703:-50.0472,0,-66.332	0/1:97:49,48:49:1719:48:1682:-122.446,0,-125.792	0/1:65:34,31:34:1193:31:1069:-76.944,0,-88.1062	0/0:57:57,0:57:1993:0:0:0,-17.1587,-179.643	0/0:120:120,0:120:4266:0:0:0,-36.1236,-384.12
chr08	30889066	.	C	T	21935.6	PASS	AB=0.48756;ABP=6.62996;AC=34;AF=0.182796;AN=186;AO=1327;CIGAR=1X;DP=8258;DPB=8258;DPRA=1.06047;EPP=2832.67;EPPR=14729.5;GTI=3;LEN=1;MEANALT=1.02632;MQM=59.5011;MQMR=59.9898;NS=93;NUMALT=1;ODDS=0.87497;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47092;QR=247593;RO=6929;RPL=1321;RPP=2832.67;RPPR=14738.1;RPR=6;RUN=1;SAF=0;SAP=2884.55;SAR=1327;SRF=1;SRP=15040.5;SRR=6928;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/1:69:31,38:31:1108:38:1360:-101.913,0,-79.2599	0/0:165:164,1:164:5864:1:36:0,-46.0717,-524.271	0/1:33:22,11:22:765:11:384:-24.9607,0,-59.2337	0/1:32:12,20:12:432:20:708:-54.4126,0,-29.5882	0/0:135:135,0:135:4774:0:0:0,-40.639,-429.817	0/0:157:157,0:157:5607:0:0:0,-47.2617,-504.753	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.151	0/0:126:126,0:126:4507:0:0:0,-37.9298,-405.798	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/0:73:73,0:73:2615:0:0:0,-21.9752,-235.597	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.136	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:152:152,0:152:5447:0:0:0,-45.7566,-490.357	0/0:117:117,0:117:4208:0:0:0,-35.2205,-378.899	0/1:95:42,53:42:1508:53:1865:-139.529,0,-107.417	0/0:41:40,0:40:1432:0:0:0,-12.0412,-128.818	0/1:108:51,57:51:1809:57:2021:-149.594,0,-130.578	0/0:57:57,0:57:2016:0:0:0,-17.1587,-181.711	0/1:234:146,88:146:5214:88:3117:-210.263,0,-398.955	0/1:49:26,23:26:932:23:811:-58.5441,0,-69.4393	0/1:43:20,23:20:720:23:813:-60.2955,0,-52.1845	0/0:154:154,0:154:5523:0:0:0,-46.3586,-497.194	0/0:142:138,3:138:4909:3:108:0,-32.625,-431.922	0/1:100:48,52:48:1724:52:1828:-134.641,0,-125.342	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:200:200,0:200:7153:0:0:0,-60.206,-643.826	0/1:167:83,84:83:2965:84:3000:-219.939,0,-216.81	0/1:76:45,31:45:1620:31:1108:-77.1355,0,-123.212	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:132:59,73:59:2112:73:2580:-192.681,0,-150.613	0/1:52:26,26:26:932:26:928:-68.1149,0,-68.5453	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:89:52,37:52:1864:37:1308:-91.2134,0,-141.248	0/1:105:50,55:50:1800:55:1960:-145.035,0,-130.674	0/1:131:73,58:73:2612:58:2037:-144.122,0,-195.892	0/0:144:144,0:144:5142:0:0:0,-43.3483,-462.919	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.87	0/0:113:113,0:113:4006:0:0:0,-34.0164,-360.729	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:317:158,159:158:5654:159:5640:-412.264,0,-413.552	0/1:69:38,31:38:1349:31:1100:-78.531,0,-100.937	0/1:16:5,11:5:180:11:384:-30.0686,0,-11.7356	0/1:80:37,43:37:1328:43:1536:-114.412,0,-95.7398	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	.:.:.:.:.:.:.:.	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:119:119,0:119:4257:0:0:0,-35.8226,-383.307	0/0:135:134,1:134:4778:1:36:0,-37.0408,-426.579	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:197:100,97:100:3564:97:3448:-251.199,0,-261.664	0/0:172:172,0:172:6107:0:0:0,-51.7772,-549.731	0/0:122:122,0:122:4350:0:0:0,-36.7257,-391.673	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/0:101:100,1:100:3565:1:32:0,-27.2047,-317.858	0/1:85:30,55:30:1076:55:1960:-151.054,0,-71.5653	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.778	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.079	0/1:51:32,19:32:1133:19:676:-45.8155,0,-86.916	0/0:186:186,0:186:6600:0:0:0,-55.9916,-594.024	0/0:129:128,1:128:4591:1:36:0,-35.2346,-409.755	0/0:83:83,0:83:2959:0:0:0,-24.9855,-266.539	0/0:122:120,2:120:4265:2:68:0,-30.2679,-377.569	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:104:104,0:104:3724:0:0:0,-31.3071,-335.361	0/1:71:39,32:39:1404:32:1132:-80.7991,0,-105.286	0/0:180:180,0:180:6421:0:0:0,-54.1854,-577.979	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:83:83,0:83:2952:0:0:0,-24.9855,-265.912	0/0:102:102,0:102:3637:0:0:0,-30.7051,-327.534	0/0:138:138,0:138:4946:0:0:0,-41.5421,-445.288	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:65:37,28:37:1332:28:1000:-70.7402,0,-100.615	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:50:30,20:30:1052:20:720:-50.0773,0,-79.9362	0/1:102:49,53:49:1752:53:1880:-138.744,0,-127.259	0/1:69:37,32:37:1332:32:1148:-82.8588,0,-99.4113	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/0:128:128,0:128:4575:0:0:0,-38.5318,-411.915
chr08	30889074	.	A	G	22107.5	PASS	AB=0.494395;ABP=3.74062;AC=34;AF=0.182796;AN=186;AO=1343;CIGAR=1X;DP=8132;DPB=8132;DPRA=1.15315;EPP=2919.3;EPPR=14602.1;GTI=4;LEN=1;MEANALT=1;MQM=59.5175;MQMR=59.9934;NS=93;NUMALT=1;ODDS=0.359914;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47874;QR=242316;RO=6787;RPL=1343;RPP=2919.3;RPPR=14610.8;RPR=0;RUN=1;SAF=0;SAP=2919.3;SAR=1343;SRF=1;SRP=14732.1;SRR=6786;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:93:92,1:92:3295:1:36:0,-24.3975,-293.17	0/1:71:32,39:32:1152:39:1375:-102.663,0,-82.617	0/0:155:155,0:155:5535:0:0:0,-46.6596,-498.276	0/1:32:21,11:21:748:11:387:-25.533,0,-58.0123	0/1:31:11,20:11:396:20:707:-54.6226,0,-26.6508	0/0:132:132,0:132:4704:0:0:0,-39.736,-423.52	0/0:153:153,0:153:5453:0:0:0,-46.0576,-490.9	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/0:125:125,0:125:4472:0:0:0,-37.6287,-402.65	0/0:94:94,0:94:3338:0:0:0,-28.2968,-300.638	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:99:99,0:99:3531:0:0:0,-29.802,-318	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/0:59:59,0:59:2099:0:0:0,-17.7608,-189.179	0/0:80:80,0:80:2845:0:0:0,-24.0824,-256.287	0/0:81:81,0:81:2916:0:0:0,-24.3834,-262.674	0/0:36:35,1:35:1247:1:36:0,-7.2388,-108.936	0/0:152:151,1:151:5403:1:36:0,-42.1583,-482.802	0/0:113:113,0:113:4044:0:0:0,-34.0164,-364.148	0/1:95:42,53:42:1485:53:1900:-142.68,0,-105.345	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:109:50,59:50:1781:59:2104:-156.76,0,-127.759	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:228:140,88:140:5005:88:3146:-214.686,0,-381.961	0/1:49:25,24:25:892:24:851:-62.1336,0,-65.8492	0/1:43:20,23:20:720:23:824:-61.2897,0,-52.1845	0/0:152:151,1:151:5339:1:36:0,-42.1583,-477.045	0/0:133:130,3:130:4602:3:108:0,-29.9618,-404.268	0/1:96:45,51:45:1608:51:1819:-134.886,0,-116.111	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:200:199,1:199:7133:1:36:0,-56.6077,-638.426	0/1:165:83,82:83:2959:82:2923:-213.629,0,-216.874	0/1:79:47,32:47:1684:32:1144:-79.4709,0,-128.066	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:133:58,75:58:2076:75:2670:-200.456,0,-147.074	0/1:52:26,26:26:932:26:936:-68.8361,0,-68.5453	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/0:96:96,0:96:3439:0:0:0,-28.8989,-309.722	0/0:75:75,0:75:2683:0:0:0,-22.5772,-241.714	0/1:86:51,35:51:1832:35:1251:-86.9894,0,-139.272	0/1:106:50,56:50:1784:56:1984:-146.89,0,-128.934	0/1:129:70,59:70:2447:59:2112:-151.456,0,-181.649	0/0:143:143,0:143:5074:0:0:0,-43.0473,-456.806	0/0:112:112,0:112:3993:0:0:0,-33.7154,-359.557	0/0:107:107,0:107:3803:0:0:0,-32.2102,-342.467	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:311:153,158:153:5468:158:5634:-413.534,0,-398.629	0/1:67:36,31:36:1265:31:1112:-80.2142,0,-93.9816	0/1:16:5,11:5:180:11:392:-30.792,0,-11.7356	0/1:83:38,45:38:1364:45:1612:-120.348,0,-98.0752	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	.:.:.:.:.:.:.:.	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:121:121,0:121:4336:0:0:0,-36.4246,-390.415	0/0:130:130,0:130:4625:0:0:0,-39.1339,-416.401	0/0:6:6,0:6:197:0:0:0,-1.80618,-18.0513	0/1:200:100,100:100:3588:100:3547:-259.207,0,-262.92	0/0:167:165,2:165:5908:2:72:0,-43.4353,-524.992	0/0:121:121,0:121:4312:0:0:0,-36.4246,-388.256	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:98:97,1:97:3468:1:36:0,-25.9027,-308.734	0/1:84:29,55:29:1036:55:1953:-150.697,0,-68.2674	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.942	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.717	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.291	0/1:52:32,20:32:1144:20:712:-48.7531,0,-87.6078	0/0:179:178,0:178:6341:0:0:0,-53.5833,-570.503	0/0:129:128,1:128:4592:1:36:0,-35.2346,-409.845	0/0:79:79,0:79:2809:0:0:0,-23.7814,-253.044	0/0:119:117,2:117:4172:2:72:0,-28.9858,-368.825	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/1:69:38,31:38:1360:31:1092:-77.8076,0,-101.93	0/0:180:180,0:180:6441:0:0:0,-54.1854,-579.775	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/0:137:137,0:137:4912:0:0:0,-41.2411,-442.23	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/1:65:36,29:36:1279:29:1040:-74.3392,0,-95.8455	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:49:28,21:28:1004:21:752:-53.2558,0,-75.9254	0/1:100:47,53:47:1684:53:1887:-139.982,0,-121.744	0/1:70:38,32:38:1364:32:1144:-82.1974,0,-101.989	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:127:126,0:126:4480:0:0:0,-37.9298,-403.01
chr08	30897283	.	G	C	90970.9	PASS	AB=0.565598;ABP=259.409;AC=32;AF=0.170213;AN=188;AO=3896;CIGAR=1X;DP=19881;DPB=19881;DPRA=1.24501;EPP=8463.07;EPPR=34611.9;GTI=4;LEN=1;MEANALT=1.27273;MQM=59.9451;MQMR=59.9637;NS=94;NUMALT=1;ODDS=2.33354;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138528;QR=563133;RO=15938;RPL=1717;RPP=121.975;RPPR=417.404;RPR=2179;RUN=1;SAF=1717;SAP=121.975;SAR=2179;SRF=7097;SRP=417.404;SRR=8841;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:83:83,0:83:2955:0:0:0,-24.9855,-266.184	0/0:322:320,1:320:11307:1:36:0,-93.3922,-1012.98	0/1:347:159,188:159:5635:188:6720:-500.372,0,-402.816	0/0:412:412,0:412:14493:0:0:0,-124.024,-1304.13	0/1:112:45,67:45:1612:67:2360:-178.941,0,-111.655	0/1:135:66,69:66:2313:69:2471:-182.005,0,-167.789	0/0:185:185,0:185:6580:0:0:0,-55.6905,-592.282	0/0:261:260,0:260:9154:0:0:0,-78.2678,-823.292	0/0:230:229,1:229:8108:1:36:0,-65.6386,-726.146	0/0:221:221,0:221:7826:0:0:0,-66.5276,-704.374	0/0:171:171,0:171:6036:0:0:0,-51.4761,-543.349	0/0:218:218,0:218:7721:0:0:0,-65.6245,-694.933	0/0:166:166,0:166:5890:0:0:0,-49.971,-530.215	0/0:186:186,0:186:6563:0:0:0,-55.9916,-590.742	0/0:169:169,0:169:6021:0:0:0,-50.8741,-541.996	0/0:149:147,0:147:5251:0:0:0,-44.2514,-472.366	0/0:179:179,0:179:6336:0:0:0,-53.8844,-570.335	0/0:177:177,0:177:6274:0:0:0,-53.2823,-564.713	0/0:99:98,0:98:3471:0:0:0,-29.5009,-312.237	0/0:486:483,3:483:17087:3:108:0,-136.225,-1527.41	0/0:317:315,0:315:11020:0:0:0,-94.8244,-991.357	0/1:219:55,163:55:1932:163:5769:-453.382,0,-108.209	0/0:194:193,1:193:6812:1:36:0,-54.8015,-609.492	0/1:243:119,124:119:4194:124:4387:-321.855,0,-304.489	0/0:225:225,0:225:7930:0:0:0,-67.7317,-713.654	0/1:537:252,285:252:8891:285:10144:-751.218,0,-638.529	0/1:400:183,217:183:6453:217:7709:-573.426,0,-460.445	0/1:73:38,35:38:1339:35:1256:-91.3701,0,-98.8341	0/0:550:548,2:548:19370:2:72:0,-158.73,-1736.02	0/0:207:205,2:205:7269:2:72:0,-55.4765,-647.428	0/1:301:138,163:138:4904:163:5789:-430.514,0,-350.903	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:44:43,0:43:1527:0:0:0,-12.9443,-137.363	0/1:30:22,6:22:788:6:216:-11.0018,0,-62.4563	0/0:24:23,0:23:820:0:0:0,-6.92369,-73.8011	0/0:30:27,0:27:968:0:0:0,-8.12781,-87.0777	0/0:438:438,0:438:15530:0:0:0,-131.851,-1397.42	0/1:302:120,182:120:4205:182:6502:-494.354,0,-287.725	0/1:187:84,103:84:2973:103:3634:-270.973,0,-211.51	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:368:182,186:182:6415:186:6609:-484.111,0,-466.664	0/1:103:51,52:51:1799:52:1859:-136.578,0,-131.185	0/0:247:247,0:247:8640:0:0:0,-74.3544,-777.604	0/0:183:183,0:183:6499:0:0:0,-55.0885,-583.81	0/0:152:151,1:151:5354:1:21:0,-43.6566,-479.895	0/1:197:76,121:76:2680:121:4327:-330.295,0,-182.141	0/1:321:130,191:130:4592:191:6782:-513.824,0,-316.816	0/1:345:126,217:126:4450:217:7722:-591.417,0,-297.08	0/0:208:206,0:206:7177:0:0:0,-62.0122,-645.636	0/0:258:258,0:258:9169:0:0:0,-77.6657,-825.187	0/0:377:376,0:376:13329:0:0:0,-113.187,-1199.06	0/1:27:21,3:21:752:3:108:-2.49062,0,-60.4219	0/1:458:181,277:181:6430:277:9879:-751.146,0,-440.91	0/1:98:46,51:46:1644:51:1816:-134.194,0,-118.728	0/1:37:17,20:17:597:20:720:-53.9907,0,-42.918	0/1:313:133,180:133:4698:180:6369:-479.078,0,-328.761	0/0:146:142,0:142:5036:0:0:0,-42.7463,-453.027	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:20:20,0:20:683:0:0:0,-6.0206,-61.7851	0/0:211:211,0:211:7470:0:0:0,-63.5173,-672.349	0/0:289:289,0:289:10211:0:0:0,-86.9977,-918.931	0/0:13:11,0:11:392:0:0:0,-3.31133,-35.2777	0/1:283:119,164:119:4191:164:5847:-441.151,0,-292.181	0/0:304:303,1:303:10706:1:32:0,-88.3138,-960.261	0/0:176:176,0:176:6227:0:0:0,-52.9813,-560.528	0/0:200:199,0:199:7037:0:0:0,-59.905,-633.042	0/0:303:302,0:302:10641:0:0:0,-90.9111,-957.246	0/1:269:68,201:68:2384:201:7124:-560.241,0,-133.838	0/0:112:111,0:111:3941:0:0:0,-33.4143,-354.506	0/0:165:165,0:165:5862:0:0:0,-49.6699,-526.593	0/0:182:181,0:181:6351:0:0:0,-54.4864,-571.327	0/0:36:36,0:36:1265:0:0:0,-10.8371,-114.15	0/0:218:218,0:218:7725:0:0:0,-65.6245,-695.268	0/1:157:77,76:77:2738:76:2696:-196.466,0,-200.245	0/0:399:399,0:399:14059:0:0:0,-120.111,-1265.09	0/0:310:309,1:309:10863:1:36:0,-89.721,-973.989	0/0:148:147,1:147:5136:1:22:0,-42.3525,-460.189	0/0:221:219,0:219:7774:0:0:0,-65.9256,-699.25	0/1:18:11,6:11:387:6:216:-14.3132,0,-29.6893	0/0:266:265,1:265:9351:1:36:0,-76.4757,-837.962	0/1:256:103,153:103:3631:153:5426:-411.406,0,-249.924	0/0:365:362,1:362:12768:1:36:0,-106.035,-1145.36	0/0:208:208,0:208:7395:0:0:0,-62.6142,-665.517	0/0:171:171,0:171:6019:0:0:0,-51.4761,-541.822	0/0:231:231,0:231:8169:0:0:0,-69.5379,-735.231	0/0:304:303,0:303:10706:0:0:0,-91.2121,-963.1	0/0:125:125,0:125:4400:0:0:0,-37.6287,-396.167	0/1:184:89,95:89:3151:95:3373:-248.396,0,-228.425	0/0:204:204,0:204:7245:0:0:0,-61.4101,-652.109	0/1:126:66,58:66:2344:58:2067:-148.613,0,-173.53	0/1:216:111,104:111:3911:104:3696:-267.755,0,-286.735	0/1:186:66,120:66:2316:120:4284:-329.747,0,-152.705	0/0:224:224,0:224:7881:0:0:0,-67.4307,-709.31	0/0:278:278,0:278:9800:0:0:0,-83.6863,-881.958
chr08	30897299	.	C	T	236490	PASS	AB=0.432201;ABP=157.006;AC=156;AF=0.829787;AN=188;AO=8828;CIGAR=1X;DP=11050;DPB=11050;DPRA=0;EPP=4239.32;EPPR=541.055;GTI=3;LEN=1;MEANALT=1;MQM=59.9346;MQMR=59.9217;NS=94;NUMALT=1;ODDS=0.502367;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=316586;QR=79575;RO=2222;RPL=6489;RPP=4239.32;RPPR=541.055;RPR=2339;RUN=1;SAF=0;SAP=19172.8;SAR=8828;SRF=0;SRP=4828.02;SRR=2222;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:196:0,196:0:0:196:7010:-630.463,-59.0019,0	0/1:205:103,102:103:3700:102:3650:-266.992,0,-271.445	1/1:295:0,295:0:0:295:10587:-952.73,-88.8039,0	0/1:52:29,23:29:1035:23:828:-59.1906,0,-77.8095	0/1:98:55,43:55:1954:43:1548:-110.112,0,-146.633	1/1:127:0,127:0:0:127:4553:-409.934,-38.2308,0	1/1:130:1,129:1:36:129:4621:-412.443,-35.5356,0	1/1:111:1,110:1:32:110:3944:-351.951,-30.215,0	1/1:134:0,134:0:0:134:4820:-433.952,-40.338,0	1/1:65:1,64:1:36:64:2292:-202.941,-15.9687,0	1/1:104:1,103:1:36:103:3704:-329.962,-27.7088,0	1/1:85:0,85:0:0:85:3060:-275.626,-25.5876,0	1/1:72:0,72:0:0:72:2588:-233.099,-21.6742,0	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	1/1:67:0,67:0:0:67:2408:-216.975,-20.169,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:90:1,89:1:36:89:3192:-283.86,-23.4944,0	1/1:42:0,42:0:0:42:1508:-136.01,-12.6433,0	1/1:376:3,373:3:108:373:13353:-1191.48,-103.112,0	1/1:187:0,187:0:0:187:6712:-604.149,-56.2926,0	0/1:144:101,43:101:3615:43:1540:-95.5448,0,-282.189	1/1:124:1,123:1:36:123:4396:-392.201,-33.7294,0	0/1:119:61,58:61:2165:58:2080:-151.643,0,-159.293	1/1:124:0,124:0:0:124:4424:-398.283,-37.3277,0	0/1:303:160,143:160:5726:143:5130:-370.572,0,-424.188	0/1:185:97,88:97:3488:88:3136:-226.776,0,-258.438	0/1:45:22,23:22:792:23:824:-60.937,0,-58.0593	1/1:365:0,365:0:0:365:13099:-1178.7,-109.876,0	1/1:129:2,127:2:72:127:4536:-401.564,-31.9961,0	0/1:168:84,84:84:3004:84:3016:-221.097,0,-220.019	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:226:1,225:1:36:225:8079:-723.522,-64.4345,0	0/1:143:91,52:91:3260:52:1872:-125.712,0,-250.573	0/1:94:49,45:49:1749:45:1612:-117.073,0,-129.395	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:247:120,127:120:4300:127:4564:-336.562,0,-312.822	0/1:40:20,20:20:720:20:720:-53.086,0,-53.0876	1/1:174:1,173:1:36:173:6204:-554.847,-48.7809,0	1/1:84:0,84:0:0:84:3001:-269.525,-25.2865,0	1/1:64:0,64:0:0:64:2296:-206.899,-19.2659,0	0/1:132:83,49:83:2976:49:1760:-118.947,0,-228.328	0/1:178:104,74:104:3717:74:2645:-184.711,0,-281.147	0/1:194:121,73:121:4344:73:2628:-178.367,0,-332.729	1/1:130:0,130:0:0:130:4672:-420.639,-39.1339,0	1/1:143:0,143:0:0:143:5120:-460.942,-43.0473,0	1/1:207:3,204:3:108:204:7321:-648.86,-52.238,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:280:162,118:162:5807:118:4224:-296.043,0,-438.184	0/1:71:42,29:42:1504:29:1025:-71.1876,0,-114.225	0/1:19:16,3:16:576:3:108:-4.3556,0,-46.4554	0/1:170:101,69:101:3623:69:2474:-171.739,0,-275.099	1/1:95:0,95:0:0:95:3416:-307.651,-28.5979,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:14:0,14:0:0:14:500:-45.336,-4.21442,0	1/1:115:0,115:0:0:115:4122:-371.163,-34.6185,0	1/1:125:0,125:0:0:125:4496:-404.806,-37.6288,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:166:100,66:100:3596:66:2368:-163.407,0,-273.845	1/1:173:0,173:0:0:173:6216:-559.531,-52.0782,0	1/1:97:0,97:0:0:97:3480:-313.402,-29.1999,0	1/1:143:0,143:0:0:143:5132:-462.019,-43.0473,0	1/1:174:0,174:0:0:174:6250:-562.46,-52.3792,0	0/1:151:115,36:115:4108:36:1292:-71.1267,0,-324.387	1/1:50:0,50:0:0:50:1776:-160.105,-15.0515,0	1/1:72:3,69:3:108:69:2476:-211.914,-11.599,0	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:134:0,134:0:0:134:4782:-430.516,-40.338,0	0/1:97:48,49:48:1716:49:1764:-129.844,0,-125.526	1/1:183:0,183:0:0:183:6559:-590.381,-55.0885,0	1/1:206:6,200:6:216:200:7170:-625.556,-42.2217,0	1/1:86:0,86:0:0:86:3072:-276.709,-25.8886,0	1/1:121:0,121:0:0:121:4344:-391.097,-36.4246,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:160:0,160:0:0:160:5726:-515.456,-48.1648,0	0/1:173:103,70:103:3674:70:2504:-173.534,0,-278.783	1/1:194:1,193:1:36:193:6935:-620.614,-54.8015,0	1/1:108:2,106:2:72:106:3808:-336.08,-25.6745,0	1/1:77:2,75:2:72:75:2692:-235.687,-16.3426,0	1/1:106:1,105:1:36:105:3772:-336.079,-28.3109,0	1/1:147:0,147:0:0:147:5275:-474.879,-44.2514,0	1/1:64:1,63:1:36:63:2260:-200.061,-15.6676,0	0/1:86:41,45:41:1472:45:1616:-119.84,0,-106.888	1/1:98:0,98:0:0:98:3520:-317.009,-29.5009,0	0/1:63:34,29:34:1206:29:1040:-74.9495,0,-89.7498	0/1:101:52,49:52:1864:49:1760:-128.28,0,-137.635	0/1:98:61,37:61:2196:37:1320:-89.601,0,-168.404	1/1:145:0,145:0:0:145:5196:-467.77,-43.6494,0	1/1:128:0,128:0:0:128:4595:-413.713,-38.5318,0
chr08	30955680	.	C	T	23949.7	PASS	AB=0.578158;ABP=126.905;AC=33;AF=0.179348;AN=184;AO=1368;CIGAR=1X;DP=6193;DPB=6193;DPRA=1.12657;EPP=2921.7;EPPR=10480.4;GTI=3;LEN=1;MEANALT=1;MQM=59.9737;MQMR=59.9712;NS=92;NUMALT=1;ODDS=0.594261;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48890;QR=170162;RO=4825;RPL=1363;RPP=2930.31;RPPR=10480.4;RPR=5;RUN=1;SAF=1;SAP=2964.91;SAR=1367;SRF=0;SRP=10480.4;SRR=4825;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:113:113,0:113:4009:0:0:0,-34.0164,-361.001	0/1:157:42,115:42:1500:115:4108:-322.644,0,-88.0329	0/0:149:149,0:149:5301:0:0:0,-44.8535,-477.227	0/1:30:9,21:9:324:21:752:-58.9754,0,-20.475	0/1:36:13,23:13:440:23:820:-63.2854,0,-29.0849	0/0:100:100,0:100:3484:0:0:0,-30.103,-313.774	0/0:107:107,0:107:3791:0:0:0,-32.2102,-341.392	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:112:112,0:112:3958:0:0:0,-33.7154,-356.415	0/0:59:59,0:59:2084:0:0:0,-17.7608,-187.828	0/0:39:39,0:39:1357:0:0:0,-11.7402,-122.426	0/0:50:50,0:50:1744:0:0:0,-15.0515,-157.241	0/0:82:82,0:82:2894:0:0:0,-24.6845,-260.698	0/0:49:49,0:49:1708:0:0:0,-14.7505,-154.003	0/0:38:38,0:38:1326:0:0:0,-11.4391,-119.638	0/0:61:61,0:61:2149:0:0:0,-18.3628,-193.676	0/0:45:45,0:45:1598:0:0:0,-13.5463,-144.109	0/0:36:36,0:36:1254:0:0:0,-10.8371,-113.161	0/0:156:156,0:156:5455:0:0:0,-46.9607,-491.086	0/0:102:102,0:102:3614:0:0:0,-30.7051,-325.468	0/1:73:19,54:19:676:54:1895:-148.847,0,-39.1928	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/1:57:32,25:32:1106:25:900:-64.1623,0,-82.6863	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/1:186:85,101:85:2993:101:3613:-269.383,0,-213.609	0/1:97:40,57:40:1419:57:2031:-153.861,0,-98.8067	0/1:29:19,10:19:671:10:360:-24.0144,0,-51.9859	0/0:154:154,0:154:5450:0:0:0,-46.3586,-490.632	0/0:72:66,6:66:2352:6:216:0,-1.88365,-192.149	0/1:58:28,30:28:992:30:1080:-80.0535,0,-72.1347	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:9:1,8:1:32:8:288:-23.5581,0,-0.490043	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:127:125,2:125:4384:2:72:0,-31.3941,-387.904	0/1:99:48,51:48:1686:51:1827:-134.909,0,-122.223	0/1:85:32,53:32:1118:53:1904:-146.05,0,-75.3384	.:.:.:.:.:.:.:.	0/1:130:54,76:54:1903:76:2713:-205.278,0,-132.413	0/1:53:18,35:18:640:35:1240:-95.9499,0,-41.9747	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:61:61,0:61:2150:0:0:0,-18.3628,-193.767	0/0:50:50,0:50:1726:0:0:0,-15.0515,-155.62	0/1:34:16,18:16:568:18:633:-47.06,0,-41.2168	0/1:73:31,42:31:1103:42:1500:-113.318,0,-77.6046	0/1:132:58,74:58:2039:74:2640:-197.006,0,-144.043	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.536	0/0:112:112,0:112:3950:0:0:0,-33.7154,-355.693	0/0:98:98,0:98:3478:0:0:0,-29.5009,-313.233	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:92:24,68:24:844:68:2448:-192.879,0,-48.5842	0/1:15:7,8:7:243:8:288:-21.752,0,-17.692	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/1:99:47,52:47:1675:52:1856:-137.518,0,-121.235	0/0:11:11,0:11:362:0:0:0,-3.31133,-32.8958	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/0:48:48,0:48:1699:0:0:0,-14.4494,-153.191	0/0:101:101,0:101:3556:0:0:0,-30.404,-320.251	.:.:.:.:.:.:.:.	0/1:155:105,50:105:3735:50:1785:-114.271,0,-289.693	0/0:95:95,0:95:3382:0:0:0,-28.5978,-304.596	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:30:29,1:29:1023:1:36:0,-5.43262,-88.7835	0/0:69:66,3:66:2334:3:108:0,-10.6959,-200.244	0/1:92:19,73:19:675:73:2610:-207.454,0,-33.3822	0/0:32:31,1:31:1096:1:36:0,-6.03468,-95.3517	0/0:38:38,0:38:1333:0:0:0,-11.4391,-120.268	0/0:78:78,0:78:2766:0:0:0,-23.4803,-249.182	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:47:47,0:47:1663:0:0:0,-14.1484,-149.957	0/1:71:44,27:44:1551:27:960:-65.3431,0,-118.508	0/0:60:60,0:60:2106:0:0:0,-18.0618,-188.446	0/0:170:170,0:170:5992:0:0:0,-51.1751,-539.384	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:114:114,0:114:4012:0:0:0,-34.3174,-361.083	0/1:16:3,13:3:108:13:464:-37.281,0,-5.25869	0/0:74:74,0:74:2617:0:0:0,-22.2762,-235.777	0/1:123:46,77:46:1640:77:2768:-212.334,0,-110.862	0/0:129:129,0:129:4541:0:0:0,-38.8329,-408.861	0/0:76:76,0:76:2676:0:0:0,-22.8783,-241.085	0/0:58:58,0:58:2047:0:0:0,-17.4597,-184.499	0/0:62:62,0:62:2168:0:0:0,-18.6639,-195.385	0/0:112:112,0:112:3914:0:0:0,-33.7154,-352.442	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:54:31,23:31:1052:23:824:-58.2277,0,-78.7249	0/0:54:54,0:54:1900:0:0:0,-16.2556,-171.275	0/1:82:27,55:27:964:55:1959:-151.9,0,-62.3924	0/1:115:62,53:62:2198:53:1892:-135.94,0,-163.463	0/1:64:21,43:21:735:43:1548:-120.347,0,-47.2055	0/0:78:78,0:78:2735:0:0:0,-23.4803,-246.021	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.486
chr08	30955699	.	C	T	105749	PASS	AB=0.425386;ABP=115.778;AC=150;AF=0.815217;AN=184;AO=4919;CIGAR=1X;DP=6288;DPB=6288;DPRA=13.8088;EPP=10684.5;EPPR=2921.7;GTI=2;LEN=1;MEANALT=1.01099;MQM=59.9673;MQMR=59.9627;NS=92;NUMALT=1;ODDS=0.967496;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175615;QR=48907;RO=1368;RPL=0;RPP=10684.5;RPPR=2887.36;RPR=4919;RUN=1;SAF=0;SAP=10684.5;SAR=4919;SRF=4;SRP=2938.94;SRR=1364;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:116:0,116:0:0:116:4149:-373.588,-34.9195,0	0/1:154:112,42:112:3966:42:1504:-89.296,0,-310.773	1/1:153:0,153:0:0:153:5474:-492.786,-46.0576,0	0/1:28:20,8:20:716:8:280:-17.1105,0,-56.3389	0/1:37:24,13:24:852:13:468:-31.3215,0,-65.8623	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	1/1:109:0,109:0:0:109:3897:-350.922,-32.8123,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:115:0,115:0:0:115:4099:-369.095,-34.6185,0	1/1:60:0,60:0:0:60:2115:-190.616,-18.0618,0	1/1:43:0,43:0:0:43:1530:-137.992,-12.9443,0	1/1:56:1,55:1:36:55:1935:-170.826,-13.2594,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:51:0,51:0:0:51:1820:-164.068,-15.3525,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:63:0,63:0:0:63:2247:-202.494,-18.9649,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:36:0,36:0:0:36:1271:-114.691,-10.8371,0	1/1:154:0,154:0:0:154:5496:-494.766,-46.3586,0	1/1:101:0,101:0:0:101:3603:-324.478,-30.404,0	0/1:72:53,19:53:1900:19:680:-39.855,0,-149.604	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:57:24,33:24:849:33:1188:-90.0699,0,-59.5691	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:179:97,82:97:3480:82:2928:-209.871,0,-259.526	0/1:99:57,42:57:2044:42:1500:-105.493,0,-154.43	0/1:33:14,19:14:500:19:680:-51.5952,0,-35.4022	1/1:154:0,154:0:0:154:5528:-497.643,-46.3586,0	1/1:76:6,70:6:216:70:2495:-205.012,-3.08777,0	0/1:59:30,29:30:1080:29:1035:-75.7031,0,-79.7525	0/0:12:11,1:11:396:1:32:0,-0.413047,-32.7834	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:133:1,132:1:36:132:4701:-419.654,-36.4387,0	0/1:100:51,49:51:1828:49:1760:-128.581,0,-134.698	0/1:87:53,34:53:1904:34:1220:-83.9172,0,-145.403	.:.:.:.:.:.:.:.	0/1:131:75,56:75:2684:56:1977:-138.76,0,-202.37	0/1:54:36,18:36:1296:18:644:-42.035,0,-100.688	1/1:31:0,31:0:0:31:1083:-97.7772,-9.33193,0	1/1:56:0,56:0:0:56:1984:-178.835,-16.8577,0	1/1:55:0,55:0:0:55:1957:-176.404,-16.5567,0	0/1:34:18,16:18:633:16:576:-41.94,0,-47.06	0/1:74:42,32:42:1508:32:1148:-81.3536,0,-113.738	0/1:131:74,57:74:2628:57:2048:-145.157,0,-196.556	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:114:0,114:0:0:114:4059:-365.497,-34.3174,0	1/1:101:0,101:0:0:101:3617:-325.734,-30.404,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:92:67,25:67:2412:25:879:-51.7309,0,-189.641	0/1:15:8,7:8:280:7:248:-18.1487,0,-21.0239	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:98:51,47:51:1805:47:1688:-122.706,0,-133.229	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:46:0,46:0:0:46:1627:-146.715,-13.8474,0	1/1:103:0,103:0:0:103:3675:-330.954,-31.0061,0	.:.:.:.:.:.:.:.	0/1:158:50,108:50:1785:108:3845:-298.683,0,-113.368	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:29:1,28:1:36:28:1004:-87.0776,-5.1316,0	1/1:71:3,68:3:108:68:2416:-207.62,-11.298,0	0/1:90:72,18:72:2584:18:633:-30.2024,0,-205.716	1/1:31:1,30:1:36:30:1060:-92.1124,-5.73366,0	1/1:40:0,40:0:0:40:1417:-127.825,-12.0412,0	1/1:85:0,85:0:0:85:3031:-273.02,-25.5876,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:47:0,47:0:0:47:1665:-150.135,-14.1484,0	0/1:72:27,45:27:972:45:1612:-123.696,0,-66.1237	1/1:63:0,63:0:0:63:2256:-201.94,-18.9649,0	1/1:170:0,170:0:0:170:6085:-547.75,-51.1751,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:117:0,117:0:0:117:4164:-374.913,-35.2205,0	0/1:15:13,2:13:464:2:72:-2.32127,0,-37.5821	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	0/1:123:77,46:77:2756:46:1652:-111.938,0,-211.255	1/1:132:0,132:0:0:132:4728:-425.679,-39.736,0	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	1/1:60:0,60:0:0:60:2137:-192.597,-18.0618,0	1/1:66:0,66:0:0:66:2358:-212.478,-19.868,0	1/1:117:0,117:0:0:117:4188:-377.088,-35.2205,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:56:23,33:23:824:33:1180:-89.6504,0,-57.6256	1/1:59:0,59:0:0:59:2111:-190.258,-17.7608,0	0/1:84:56,28:56:2001:28:1004:-65.3893,0,-155.075	0/1:116:55,60:55:1960:60:2136:-157.675,0,-141.844	0/1:65:45,20:45:1616:20:716:-45.2008,0,-126.163	1/1:81:0,81:0:0:81:2885:-259.847,-24.3834,0	1/1:63:0,63:0:0:63:2259:-203.572,-18.9649,0
chr08	30990297	.	T	C	28500.7	PASS	AB=0.610023;ABP=233.799;AC=31;AF=0.166667;AN=186;AO=1361;CIGAR=1X;DP=6642;DPB=6642;DPRA=1.12098;EPP=2444.39;EPPR=10580.7;GTI=4;LEN=1;MEANALT=1.05;MQM=59.9919;MQMR=59.9896;NS=93;NUMALT=1;ODDS=0.482882;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48674;QR=185993;RO=5279;RPL=164;RPP=1705.55;RPPR=11164.2;RPR=1197;RUN=1;SAF=1259;SAP=2138.82;SAR=102;SRF=5206;SRP=10840.9;SRR=73;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:68:68,0:68:2411:0:0:0,-20.47,-217.247	0/1:78:23,55:23:811:55:1960:-153.195,0,-49.8296	0/0:124:124,0:124:4375:0:0:0,-37.3277,-393.927	0/0:23:22,1:22:779:1:36:0,-3.32541,-66.8338	0/1:20:14,6:14:483:6:212:-13.4042,0,-37.7767	0/0:159:159,0:159:5567:0:0:0,-47.8638,-501.158	0/0:92:92,0:92:3246:0:0:0,-27.6948,-292.364	0/0:62:62,0:62:2189:0:0:0,-18.6639,-197.274	0/0:81:81,0:81:2847:0:0:0,-24.3834,-256.468	0/0:46:46,0:46:1627:0:0:0,-13.8474,-146.56	0/0:50:50,0:50:1751:0:0:0,-15.0515,-157.873	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:42:42,0:42:1474:0:0:0,-12.6433,-132.953	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.395	0/0:52:52,0:52:1806:0:0:0,-15.6536,-162.818	0/0:52:52,0:52:1802:0:0:0,-15.6536,-162.458	0/0:50:50,0:50:1775:0:0:0,-15.0515,-160.032	0/0:46:46,0:46:1627:0:0:0,-13.8474,-146.718	0/0:155:155,0:155:5489:0:0:0,-46.6596,-494.14	0/0:92:92,0:92:3213:0:0:0,-27.6948,-289.394	0/1:29:23,6:23:809:6:212:-10.6949,0,-64.3984	0/0:99:99,0:99:3460:0:0:0,-29.802,-311.612	0/1:40:26,14:26:936:14:504:-33.6569,0,-72.5183	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/1:255:101,154:101:3573:154:5510:-419.264,0,-245.017	0/1:104:34,70:34:1187:70:2508:-194.665,0,-75.827	0/1:41:18,23:18:644:23:828:-62.5019,0,-45.9484	0/0:202:202,0:202:7117:0:0:0,-60.8081,-640.6	0/0:82:75,6:75:2647:6:216:0,-4.91855,-218.693	0/1:75:27,48:27:960:48:1712:-131.788,0,-64.139	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:149:149,0:149:5230:0:0:0,-44.8535,-470.847	0/1:91:51,40:51:1765:40:1428:-101.424,0,-131.735	0/1:72:22,50:22:770:50:1788:-139.528,0,-47.9452	.:.:.:.:.:.:.:.	0/1:130:45,84:45:1580:84:3004:-231.399,0,-103.295	0/1:43:17,26:17:599:26:928:-70.894,0,-41.2938	0/0:97:97,0:97:3422:0:0:0,-29.1999,-308.194	0/0:57:57,0:57:1997:0:0:0,-17.1587,-180.002	0/0:54:54,0:54:1897:0:0:0,-16.2556,-171.006	0/1:71:50,21:50:1731:21:756:-46.9941,0,-134.698	0/1:64:41,23:41:1451:23:824:-55.2174,0,-111.619	0/1:101:37,64:37:1315:64:2272:-174.332,0,-88.247	0/0:68:68,0:68:2387:0:0:0,-20.47,-215.086	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:128:128,0:128:4528:0:0:0,-38.5318,-407.691	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:82:34,48:34:1212:48:1712:-129.681,0,-84.6785	0/1:70:26,44:26:927:44:1572:-120.699,0,-62.6753	0/1:13:2,11:2:72:11:392:-31.7067,0,-2.92333	0/1:99:29,70:29:1018:70:2516:-196.89,0,-62.1285	0/0:47:46,1:46:1615:1:36:0,-10.5501,-142.04	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:59:59,0:59:2096:0:0:0,-17.7608,-188.91	0/0:108:108,0:108:3808:0:0:0,-32.5112,-342.92	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:190:52,138:52:1848:138:4952:-388.632,0,-109.404	0/0:121:120,1:120:4225:1:32:0,-33.2253,-377.234	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/0:131:128,3:128:4534:3:108:0,-29.3598,-398.154	0/1:101:35,66:35:1243:66:2353:-181.623,0,-81.7698	0/0:23:22,1:22:771:1:36:0,-3.32541,-66.112	0/0:87:87,0:87:3076:0:0:0,-26.1896,-277.068	0/0:77:77,0:77:2673:0:0:0,-23.1793,-240.816	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/0:125:125,0:125:4377:0:0:0,-37.6287,-394.112	0/1:56:15,41:15:536:41:1476:-116.278,0,-31.7171	0/0:106:106,0:106:3739:0:0:0,-31.9092,-336.712	0/0:119:118,1:118:4181:1:36:0,-32.2243,-372.874	0/0:52:52,0:52:1822:0:0:0,-15.6536,-164.26	0/0:61:60,1:60:2123:1:36:0,-14.7646,-187.74	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/0:85:85,0:85:2993:0:0:0,-25.5875,-269.603	0/1:81:36,45:36:1263:45:1604:-120.267,0,-89.5883	0/0:142:142,0:142:5050:0:0:0,-42.7463,-454.648	0/0:115:113,2:113:3981:2:63:0,-28.6353,-352.502	0/0:63:63,0:63:2209:0:0:0,-18.9649,-199.074	0/0:65:65,0:65:2306:0:0:0,-19.5669,-207.8	0/0:125:122,3:122:4275:3:108:0,-27.5536,-374.856	0/0:37:37,0:37:1289:0:0:0,-11.1381,-116.309	0/1:85:26,59:26:911:59:2112:-164.761,0,-56.7174	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.551	0/1:53:23,30:23:807:30:1076:-81.1983,0,-56.9946	0/1:73:35,38:35:1231:38:1356:-100.365,0,-89.1181	0/1:64:9,55:9:294:55:1976:-158.849,0,-7.51219	0/0:68:68,0:68:2391:0:0:0,-20.47,-215.446	0/0:58:58,0:58:2029:0:0:0,-17.4597,-182.881
chr08	30990435	.	A	G	179478	PASS	AB=0.464761;ABP=24.8952;AC=156;AF=0.829787;AN=188;AO=6422;CIGAR=1X;DP=7522;DPB=7522;DPRA=0;EPP=18.7861;EPPR=4.05744;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9872;MQMR=59.9954;NS=94;NUMALT=1;ODDS=1.70776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228555;QR=39123;RO=1097;RPL=0;RPP=13948.2;RPPR=2385.12;RPR=6422;RUN=1;SAF=3319;SAP=18.7861;SAR=3103;SRF=560;SRP=4.05744;SRR=537;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1589:-143.298,-13.5464,0	1/1:72:0,72:0:0:72:2563:-230.92,-21.6742,0	0/1:116:73,43:73:2587:43:1536:-103.614,0,-198.157	1/1:82:0,82:0:0:82:2913:-262.405,-24.6845,0	0/1:35:20,15:20:716:15:536:-38.0388,0,-54.2317	0/1:29:19,10:19:680:10:360:-24.0144,0,-52.7993	1/1:56:1,55:1:36:55:1943:-171.546,-13.2594,0	1/1:81:0,81:0:0:81:2892:-260.517,-24.3834,0	1/1:106:0,106:0:0:106:3788:-341.119,-31.9092,0	1/1:55:0,55:0:0:55:1962:-176.854,-16.5567,0	1/1:83:0,83:0:0:83:2972:-267.713,-24.9855,0	1/1:132:0,132:0:0:132:4703:-423.432,-39.736,0	1/1:166:0,166:0:0:166:5925:-533.359,-49.971,0	1/1:127:0,127:0:0:127:4512:-406.249,-38.2308,0	1/1:147:0,147:0:0:147:5250:-472.637,-44.2514,0	1/1:101:0,101:0:0:101:3569:-321.42,-30.404,0	1/1:102:0,102:0:0:102:3621:-326.096,-30.7051,0	1/1:112:0,112:0:0:112:4008:-360.909,-33.7154,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:86:0,86:0:0:86:3079:-277.338,-25.8886,0	1/1:97:0,97:0:0:97:3434:-309.273,-29.1999,0	0/1:31:22,9:22:784:9:316:-19.4469,0,-61.552	1/1:53:0,53:0:0:53:1877:-169.207,-15.9546,0	0/1:42:22,20:22:792:20:705:-51.1295,0,-58.9624	1/1:47:0,47:0:0:47:1648:-148.605,-14.1484,0	0/1:132:64,68:64:2300:68:2420:-178.319,0,-167.525	0/1:137:70,67:70:2508:67:2383:-173.486,0,-184.731	0/1:58:26,32:26:932:32:1148:-86.1701,0,-66.7391	1/1:99:1,98:1:36:98:3475:-309.364,-26.2037,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:88:37,51:37:1324:51:1817:-137.232,0,-92.9715	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:301:0,299:0:0:299:10629:-956.168,-90.008,0	0/1:38:19,19:19:680:19:680:-50.09,0,-50.09	0/1:75:29,46:29:1031:46:1645:-125.76,0,-70.5254	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:68:32,36:32:1136:36:1284:-95.3934,0,-82.0789	0/1:47:25,22:25:892:22:788:-57.0964,0,-66.4513	1/1:110:0,110:0:0:110:3917:-352.724,-33.1133,0	1/1:144:0,144:0:0:144:5120:-460.943,-43.3483,0	1/1:103:0,103:0:0:103:3663:-329.872,-31.0061,0	0/1:57:31,26:31:1100:26:932:-67.0402,0,-82.1516	0/1:74:36,38:36:1292:38:1343:-98.8931,0,-94.3075	0/1:87:52,35:52:1868:35:1247:-86.3441,0,-142.21	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:122:0,122:0:0:122:4364:-392.935,-36.7257,0	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:97:60,37:60:2156:37:1315:-89.4511,0,-165.107	0/1:29:16,13:16:564:13:450:-32.0987,0,-42.3604	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:61:30,31:30:1072:31:1104:-81.3078,0,-78.4296	1/1:20:0,20:0:0:20:702:-63.5025,-6.0206,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:71:1,70:1:36:70:2479:-219.764,-17.7749,0	1/1:141:1,140:1:36:140:4978:-444.57,-38.847,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:81:38,43:38:1341:43:1540:-114.51,0,-96.6013	1/1:140:0,140:0:0:140:4975:-447.9,-42.1442,0	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:44:0,44:0:0:44:1535:-138.167,-13.2453,0	1/1:106:1,105:1:32:105:3715:-331.353,-28.7099,0	0/1:85:61,24:61:2162:24:832:-49.6064,0,-169.258	1/1:52:0,52:0:0:52:1850:-166.779,-15.6536,0	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	1/1:139:0,139:0:0:139:4970:-447.448,-41.8432,0	1/1:8:0,8:0:0:8:269:-24.5361,-2.40824,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:65:40,25:40:1413:25:891:-60.9418,0,-107.898	1/1:155:1,154:1:36:154:5430:-485.235,-43.0614,0	1/1:100:0,100:0:0:100:3580:-322.407,-30.103,0	1/1:77:2,75:2:72:75:2680:-234.609,-16.3426,0	1/1:103:0,103:0:0:103:3660:-329.604,-31.0061,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:105:0,105:0:0:105:3748:-337.521,-31.6082,0	0/1:104:51,53:51:1804:53:1866:-136.911,0,-131.335	1/1:167:1,166:1:36:166:5916:-528.952,-46.6737,0	1/1:131:0,130:0:0:130:4634:-416.864,-39.1339,0	1/1:135:0,135:0:0:135:4788:-431.078,-40.6391,0	1/1:152:0,152:0:0:152:5442:-489.907,-45.7566,0	1/1:218:2,216:2:72:216:7710:-687.099,-58.7878,0	1/1:52:0,52:0:0:52:1846:-166.419,-15.6536,0	0/1:95:53,42:53:1900:42:1491:-105.886,0,-142.68	1/1:111:0,111:0:0:111:3953:-355.963,-33.4143,0	0/1:75:34,41:34:1220:41:1446:-107.857,0,-87.5296	0/1:98:44,54:44:1542:54:1910:-142.675,0,-109.569	0/1:106:72,34:72:2575:34:1212:-77.4771,0,-200.09	1/1:88:0,88:0:0:88:3121:-281.118,-26.4906,0	1/1:213:0,213:0:0:213:7628:-686.555,-64.1194,0
chr08	30990460	.	G	A	23824.9	PASS	AB=0.525602;ABP=14.3517;AC=32;AF=0.170213;AN=188;AO=1058;CIGAR=1X;DP=7454;DPB=7454;DPRA=0.860304;EPP=2300.43;EPPR=13870;GTI=3;LEN=1;MEANALT=1.02381;MQM=59.9953;MQMR=59.9862;NS=94;NUMALT=1;ODDS=1.38426;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37619;QR=226317;RO=6394;RPL=522;RPP=3.41258;RPPR=5.18381;RPR=536;RUN=1;SAF=522;SAP=3.41258;SAR=536;SRF=3235;SRP=4.97189;SRR=3159;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1498:0:0:0,-12.9443,-135.109	0/0:70:70,0:70:2474:0:0:0,-21.0721,-222.914	0/1:113:41,72:41:1472:72:2555:-196.183,0,-98.7597	0/0:81:81,0:81:2883:0:0:0,-24.3834,-259.707	0/1:35:15,20:15:536:20:707:-53.4185,0,-38.0388	0/1:31:11,20:11:396:20:707:-54.6226,0,-26.6508	0/0:56:55,1:55:1951:1:36:0,-13.2594,-172.267	0/0:81:81,0:81:2860:0:0:0,-24.3834,-257.638	0/0:110:110,0:110:3906:0:0:0,-33.1133,-351.733	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:81:81,0:81:2889:0:0:0,-24.3834,-260.245	0/0:137:137,0:137:4839:0:0:0,-41.2411,-435.666	0/0:163:163,0:163:5717:0:0:0,-49.0679,-514.655	0/0:126:126,0:126:4394:0:0:0,-37.9298,-395.636	0/0:143:143,0:143:5034:0:0:0,-43.0473,-453.207	0/0:100:100,0:100:3534:0:0:0,-30.103,-318.269	0/0:101:101,0:101:3520:0:0:0,-30.404,-317.01	0/0:112:111,0:111:3929:0:0:0,-33.4143,-353.482	0/0:62:62,0:62:2174:0:0:0,-18.6639,-195.924	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.347	0/0:96:96,0:96:3379:0:0:0,-28.8989,-304.324	0/1:31:9,22:9:324:22:771:-60.3784,0,-20.1739	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:41:20,21:20:707:21:743:-54.8511,0,-51.6123	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/1:127:67,60:67:2376:60:2135:-154.187,0,-175.868	0/1:135:66,69:66:2356:69:2463:-181.285,0,-171.66	0/1:54:30,24:30:1080:24:845:-60.1115,0,-81.2576	0/0:98:97,1:97:3449:1:36:0,-25.9027,-307.024	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:86:51,35:51:1805:35:1260:-87.8169,0,-136.283	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:302:302,0:302:10709:0:0:0,-90.9111,-963.723	0/1:38:19,19:19:680:19:680:-50.09,0,-50.09	0/1:75:45,30:45:1573:30:1059:-73.0432,0,-119.275	0/0:3:3,0:3:95:0:0:0,-0.90309,-8.86421	0/1:71:38,33:38:1360:33:1184:-85.4952,0,-101.327	0/1:47:23,24:23:798:24:864:-63.9342,0,-57.9857	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.386	0/0:140:140,0:140:4918:0:0:0,-42.1442,-442.775	0/0:105:105,0:105:3686:0:0:0,-31.6081,-331.943	0/1:58:26,32:26:928:32:1148:-86.1701,0,-66.3785	0/1:74:39,35:39:1357:35:1242:-89.8084,0,-100.147	0/1:84:35,48:35:1252:48:1702:-128.158,0,-87.6786	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.401	0/0:122:121,1:121:4293:1:32:0,-33.5263,-383.35	0/0:51:51,0:51:1810:0:0:0,-15.3525,-163.18	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:98:37,61:37:1320:61:2165:-165.614,0,-89.601	0/1:26:11,15:11:387:15:540:-41.1098,0,-27.3392	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:60:30,30:30:1072:30:1060:-77.6495,0,-78.7307	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:70:69,1:69:2464:1:36:0,-17.4738,-218.416	0/0:143:142,1:142:5029:1:36:0,-39.449,-449.157	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:79:45,34:45:1594:34:1197:-84.2519,0,-119.967	0/0:144:144,0:144:5123:0:0:0,-43.3483,-461.216	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:44:44,0:44:1538:0:0:0,-13.2453,-138.152	0/0:109:108,1:108:3823:1:36:0,-29.214,-340.67	0/1:82:26,56:26:936:56:1991:-154.779,0,-59.875	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:39:39,0:39:1357:0:0:0,-11.7402,-122.423	0/0:135:135,0:135:4762:0:0:0,-40.639,-428.739	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:27:26,1:26:932:1:36:0,-4.52953,-80.6006	0/1:63:26,37:26:914:37:1315:-99.6861,0,-63.6098	0/0:152:151,1:151:5392:1:36:0,-42.1583,-481.812	0/0:100:100,0:100:3559:0:0:0,-30.103,-320.519	0/0:74:73,1:73:2578:1:36:0,-18.6779,-228.669	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.253	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:104:104,0:104:3680:0:0:0,-31.3071,-331.401	0/1:105:52,53:52:1842:53:1884:-138.23,0,-134.451	0/0:165:165,0:165:5871:0:0:0,-49.6699,-528.5	0/0:130:130,0:130:4582:0:0:0,-39.1339,-412.546	0/0:133:133,0:133:4708:0:0:0,-40.037,-423.88	0/0:147:147,0:147:5149:0:0:0,-44.2514,-463.552	0/0:213:211,2:211:7439:2:72:0,-57.2827,-662.726	0/0:50:50,0:50:1735:0:0:0,-15.0515,-156.428	0/1:95:43,52:43:1518:52:1848:-138,0,-108.314	0/0:111:111,0:111:3937:0:0:0,-33.4143,-354.521	0/1:72:41,31:41:1445:31:1116:-79.0775,0,-108.669	0/1:94:54,40:54:1900:40:1403:-98.2696,0,-142.979	0/1:100:35,65:35:1260:65:2319:-178.867,0,-83.6025	0/0:86:86,0:86:3037:0:0:0,-25.8886,-273.558	0/0:214:214,0:214:7578:0:0:0,-64.4204,-682.059
chr08	30991461	.	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chr08	30998801	.	G	A	130216	PASS	AB=0.508028;ABP=4.37004;AC=156;AF=0.829787;AN=188;AO=6080;CIGAR=1X;DP=7294;DPB=7294;DPRA=26.1326;EPP=13205.6;EPPR=2637.01;GTI=1;LEN=1;MEANALT=1.01075;MQM=57.9656;MQMR=28.5177;NS=94;NUMALT=1;ODDS=6.33656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214666;QR=40491;RO=1213;RPL=0;RPP=13205.6;RPPR=2637.01;RPR=6080;RUN=1;SAF=0;SAP=13205.6;SAR=6080;SRF=0;SRP=2637.01;SRR=1213;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:601:-54.0504,-5.11751,0	1/1:111:0,110:0:0:110:3922:-351.738,-33.1133,0	0/1:79:33,46:33:1108:46:1588:-119.065,0,-57.5244	1/1:76:0,76:0:0:76:2695:-242.724,-22.8783,0	0/1:33:12,21:12:407:21:756:-58.3965,0,-19.2516	0/1:30:11,19:11:355:19:665:-51.0766,0,-17.684	1/1:88:0,88:0:0:88:3131:-281.7,-26.4906,0	1/1:111:0,111:0:0:111:3887:-349.031,-33.4143,0	1/1:75:0,75:0:0:75:2583:-232.266,-22.5773,0	1/1:41:0,41:0:0:41:1451:-130.663,-12.3422,0	1/1:50:0,50:0:0:50:1759:-158.527,-15.0515,0	1/1:62:0,62:0:0:62:2154:-193.838,-18.6639,0	1/1:64:0,64:0:0:64:2238:-201.192,-19.2659,0	1/1:78:0,78:0:0:78:2748:-247.473,-23.4803,0	1/1:64:0,64:0:0:64:2284:-205.692,-19.2659,0	1/1:88:0,88:0:0:88:3071:-276.382,-26.4906,0	1/1:83:0,83:0:0:83:2887:-259.419,-24.9855,0	1/1:62:1,61:1:36:61:2143:-189.879,-15.8428,0	1/1:51:0,51:0:0:51:1778:-160.117,-15.3525,0	1/1:175:0,175:0:0:175:6205:-557.415,-52.6803,0	1/1:101:0,101:0:0:101:3562:-320.467,-30.404,0	0/1:85:51,34:51:1722:34:1201:-82.7473,0,-100.186	1/1:67:0,67:0:0:67:2353:-211.995,-20.169,0	0/1:73:22,51:22:738:51:1802:-140.446,0,-31.1267	1/1:52:0,52:0:0:52:1848:-166.443,-15.6536,0	0/1:168:69,99:69:2347:99:3510:-265.389,0,-119.895	0/1:161:90,71:90:2960:71:2499:-176.623,0,-165.683	0/1:28:13,15:13:431:15:504:-37.2475,0,-23.3619	1/1:209:0,209:0:0:209:7379:-664.021,-62.9153,0	1/1:123:4,119:4:126:119:4242:-372.153,-27.4387,0	0/1:98:45,53:45:1522:53:1884:-140.33,0,-81.6141	0/1:20:8,12:8:264:12:428:-32.8096,0,-13.6333	1/1:13:0,13:0:0:13:460:-41.7286,-3.91339,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-7.80818	1/1:5:0,5:0:0:5:180:-16.4302,-1.50515,0	1/1:12:0,12:0:0:12:424:-38.4614,-3.61236,0	1/1:149:0,149:0:0:149:5208:-468.813,-44.8535,0	0/1:145:61,84:61:2064:84:2939:-220.991,0,-103.724	0/1:62:40,22:40:1273:22:767:-50.6228,0,-77.1814	1/1:5:0,5:0:0:5:171:-15.7253,-1.50515,0	0/1:116:51,65:51:1697:65:2303:-172.519,0,-86.2657	0/1:69:35,34:35:1146:34:1208:-88.1959,0,-63.1438	1/1:119:0,119:0:0:119:4212:-378.794,-35.8226,0	1/1:70:2,68:2:68:68:2382:-210.142,-16.7709,0	1/1:42:0,42:0:0:42:1484:-133.696,-12.6433,0	1/1:76:0,76:0:0:76:2720:-245.006,-22.8783,0	0/1:86:35,51:35:1192:51:1806:-136.774,0,-59.6188	0/1:144:84,60:84:2786:60:2109:-146.661,0,-160.735	1/1:90:1,89:1:36:89:3136:-279.606,-24.2716,0	1/1:89:0,89:0:0:89:3179:-285.977,-26.7917,0	1/1:109:0,109:0:0:109:3822:-343.193,-32.8123,0	0/1:17:7,10:7:248:10:356:-27.2637,0,-12.7708	0/1:88:37,51:37:1273:51:1811:-136.519,0,-65.6175	0/1:42:12,30:12:415:30:1067:-83.6669,0,-17.6271	0/1:17:7,10:7:230:10:356:-27.2338,0,-12.2392	0/1:118:53,65:53:1796:65:2314:-172.733,0,-92.2975	1/1:53:0,53:0:0:53:1892:-170.528,-15.9546,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:60:0,60:0:0:60:2115:-190.485,-18.0618,0	1/1:125:2,123:2:68:123:4354:-386.648,-32.3612,0	1/1:11:0,11:0:0:11:388:-35.256,-3.31133,0	0/1:182:84,98:84:2865:98:3439:-254.672,0,-151.745	1/1:146:0,146:0:0:146:5182:-466.273,-43.9504,0	1/1:56:0,56:0:0:56:1984:-178.8,-16.8577,0	1/1:71:0,71:0:0:71:2500:-225.084,-21.3731,0	1/1:136:1,135:1:36:135:4800:-428.845,-38.119,0	0/1:89:59,30:59:1976:30:1072:-70.0008,0,-117.901	1/1:24:0,24:0:0:24:856:-76.8628,-7.22472,0	1/1:68:0,68:0:0:68:2398:-215.352,-20.47,0	1/1:69:1,68:1:32:68:2371:-211.395,-18.5223,0	1/1:17:0,17:0:0:17:608:-55.0463,-5.11751,0	1/1:108:0,108:0:0:108:3834:-343.909,-32.5112,0	0/1:64:43,21:43:1433:21:739:-47.4584,0,-83.5904	1/1:131:0,131:0:0:131:4634:-416.924,-39.4349,0	1/1:170:0,170:0:0:170:6044:-542.568,-51.1751,0	1/1:77:1,76:1:32:76:2660:-236.56,-20.4556,0	1/1:74:0,74:0:0:74:2635:-236.917,-22.2762,0	0/1:19:8,11:8:252:11:392:-29.8654,0,-13.588	1/1:61:0,61:0:0:61:2149:-193.638,-18.3628,0	0/1:117:62,55:62:2098:55:1968:-141.784,0,-117.469	1/1:158:1,157:1:32:157:5572:-499.169,-45.314,0	1/1:91:0,91:0:0:91:3196:-287.669,-27.3937,0	1/1:60:0,60:0:0:60:2099:-189.111,-18.0618,0	1/1:65:0,65:0:0:65:2265:-204.049,-19.567,0	1/1:112:0,112:0:0:112:3963:-356.689,-33.7154,0	1/1:31:0,31:0:0:31:1092:-97.5229,-9.33193,0	0/1:61:29,32:29:903:32:1114:-81.7294,0,-49.9254	1/1:67:0,67:0:0:67:2344:-210.788,-20.169,0	0/1:67:50,17:50:1594:17:608:-34.8465,0,-97.1975	0/1:104:54,50:54:1793:50:1750:-126.419,0,-98.5272	0/1:47:30,17:30:997:17:604:-40.5306,0,-59.735	1/1:100:1,99:1:36:99:3515:-313.647,-27.2819,0	1/1:78:0,78:0:0:78:2782:-250.477,-23.4803,0
chr08	30998813	.	AGGA	GGGG,GGGA	148694	PASS	AB=0.496221,0.497732;ABP=3.33856,3.12848;AC=156,32;AF=0.829787,0.170213;AN=188;AO=6465,1336;CIGAR=1X2M1X,1X3M;DP=7845;DPB=7845.75;DPRA=28.1075,1.23715;EPP=14041.6,2904.1;EPPR=3.73412;GTI=1;LEN=4,1;MEANALT=1.86022,2.42857;MQM=57.9202,28.7208;MQMR=24.6667;NS=94;NUMALT=2;ODDS=5.61644;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=72,0;PQR=0;PRO=0;QA=219266,37981;QR=93;RO=3;RPL=0,0;RPP=14041.6,2904.1;RPPR=3.73412;RPR=6465,1336;RUN=1,1;SAF=0,0;SAP=14041.6,2904.1;SAR=6465,1336;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18,0:0:0:18,0:594,0:-53.5088,-5.41854,0,-53.5088,-5.41854,-53.5088	1/1:118:0,117,0:0:0:117,0:3989,0:-357.967,-35.2205,0,-357.967,-35.2205,-357.967	1/2:88:0,48,40:0:0:48,40:1619,1163:-213.396,-82.7576,-68.3082,-130.935,0,-118.893	1/1:84:0,84,0:0:0:84,0:2846,0:-255.408,-25.2865,0,-255.408,-25.2865,-255.408	1/2:34:0,21,13:0:0:21,13:708,364:-82.977,-25.5785,-19.2569,-57.6816,0,-53.7682	1/2:35:0,19,16:0:0:19,16:651,458:-85.329,-32.4896,-26.7701,-53.1355,0,-48.319	1/1:97:0,93,0:0:0:93,0:3141,0:-282.491,-27.9958,0,-282.491,-27.9958,-282.491	1/1:116:0,116,0:0:0:116,0:3988,0:-358.206,-34.9195,0,-358.206,-34.9195,-358.206	1/1:79:0,79,0:0:0:79,0:2635,0:-237.001,-23.7814,0,-237.001,-23.7814,-237.001	1/1:49:0,49,0:0:0:49,0:1619,0:-145.542,-14.7505,0,-145.542,-14.7505,-145.542	1/1:56:0,55,0:0:0:55,0:1808,0:-162.664,-16.5567,0,-162.664,-16.5567,-162.664	1/1:66:0,66,0:0:0:66,0:2202,0:-198.19,-19.868,0,-198.19,-19.868,-198.19	1/1:67:0,67,0:0:0:67,0:2276,0:-204.725,-20.169,0,-204.725,-20.169,-204.725	1/1:81:0,79,0:0:0:79,0:2700,0:-242.873,-23.7814,0,-242.873,-23.7814,-242.873	1/1:66:0,65,0:0:0:65,0:2186,0:-196.59,-19.567,0,-196.59,-19.567,-196.59	1/1:93:0,93,0:0:0:93,0:3096,0:-278.721,-27.9958,0,-278.721,-27.9958,-278.721	1/1:86:0,85,0:0:0:85,0:2825,0:-253.873,-25.5876,0,-253.873,-25.5876,-253.873	1/1:63:0,62,1:0:0:62,1:2060,29:-185.012,-18.6639,0,-182.974,-16.3656,-182.673	1/1:57:0,57,0:0:0:57,0:1836,0:-165.335,-17.1587,0,-165.335,-17.1587,-165.335	1/1:191:0,191,0:0:0:191,0:6542,0:-588.198,-57.4967,0,-588.198,-57.4967,-588.198	1/1:113:0,113,0:0:0:113,0:3853,0:-346.381,-34.0164,0,-346.381,-34.0164,-346.381	1/2:91:0,37,51:0:0:37,51:1280,1475:-207.593,-103.602,-92.4637,-104.044,0,-88.6913	1/1:72:0,72,0:0:0:72,0:2458,0:-221.462,-21.6742,0,-221.462,-21.6742,-221.462	1/2:78:0,52,25:0:0:52,25:1803,698:-195.139,-48.5575,-32.904,-146.641,0,-139.115	1/1:56:0,56,0:0:0:56,0:1896,0:-170.85,-16.8577,0,-170.85,-16.8577,-170.85	1/2:186:0,108,74:0:0:108,74:3658,2128:-445.926,-149.432,-116.92,-296.503,0,-274.226	1/2:179:0,81,97:0:0:81,97:2757,2714:-413.307,-189.684,-165.3,-223.728,0,-194.528	1/2:30:0,15,15:0:0:15,15:484,424:-68.8984,-29.8377,-25.3222,-39.3483,0,-34.8328	1/1:223:0,221,1:0:0:221,1:7542,29:-678.395,-66.5276,0,-676.357,-64.4744,-676.056	1/1:126:0,122,4:0:0:122,4:4213,112:-378.723,-36.7257,0,-370.933,-28.6823,-369.729	1/2:104:0,55,49:0:0:55,49:1881,1414:-252.894,-100.187,-83.6306,-153.006,0,-138.255	1/2:24:0,14,10:0:0:14,10:461,282:-57.2153,-19.9153,-15.7009,-37.5841,0,-34.5738	1/1:15:0,15,0:0:0:15,0:505,0:-45.7637,-4.51545,0,-45.7637,-4.51545,-45.7637	2/2:3:0,0,3:0:0:0,3:0,87:-7.27788,-7.27788,-7.27788,-0.90309,-0.90309,0	1/1:6:0,6,0:0:0:6,0:195,0:-17.8207,-1.80618,0,-17.8207,-1.80618,-17.8207	1/1:12:0,12,0:0:0:12,0:428,0:-38.8242,-3.61236,0,-38.8242,-3.61236,-38.8242	1/1:160:0,160,0:0:0:160,0:5321,0:-478.595,-48.1648,0,-478.595,-48.1648,-478.595	1/2:161:0,88,73:0:0:88,73:3007,2036:-386.175,-142.44,-115.949,-244.026,0,-222.051	1/2:70:0,24,46:0:0:24,46:792,1313:-156.223,-92.2144,-84.9897,-64.3132,0,-50.4659	1/1:5:0,5,0:0:0:5,0:175,0:-16.093,-1.50515,0,-16.093,-1.50515,-16.093	1/2:126:0,70,56:0:0:70,56:2390,1565:-303.116,-109.215,-88.1428,-194.192,0,-177.334	1/2:73:0,34,39:0:0:34,39:1164,1089:-170.71,-76.2213,-65.9863,-94.7876,0,-83.0474	1/1:129:0,128,0:0:0:128,0:4286,0:-385.431,-38.5318,0,-385.431,-38.5318,-385.431	1/1:71:0,70,0:0:0:70,0:2330,0:-207.229,-21.0721,0,-207.229,-21.0721,-207.229	1/1:48:0,48,0:0:0:48,0:1574,0:-141.855,-14.4494,0,-141.855,-14.4494,-141.855	1/1:86:0,86,0:0:0:86,0:2909,0:-262.032,-25.8886,0,-262.032,-25.8886,-262.032	1/2:91:0,54,37:0:0:54,37:1865,1037:-224.283,-72.836,-56.5804,-151.737,0,-140.598	1/2:155:0,65,89:0:0:65,89:2239,2572:-362.556,-180.71,-161.143,-181.884,0,-155.092	1/1:93:0,92,1:0:0:92,1:3169,29:-285.129,-27.6948,0,-283.091,-25.3965,-282.79	1/1:91:0,91,0:0:0:91,0:3147,0:-283.23,-27.3937,0,-283.23,-27.3937,-283.23	1/1:120:0,119,0:0:0:119,0:4084,0:-366.277,-35.8226,0,-366.277,-35.8226,-366.277	1/2:17:0,10,7:0:0:10,7:351,201:-43.0093,-14.3883,-11.378,-28.9171,0,-26.8099	1/2:94:0,54,39:0:0:54,39:1806,1118:-224.575,-78.4914,-62.2358,-146.123,0,-134.383	1/2:45:0,31,14:0:0:31,14:1048,408:-113.964,-28.9773,-19.6454,-85.2719,0,-81.0575	1/2:16:0,10,6:0:0:10,6:336,174:-39.7321,-12.4897,-9.47936,-27.5307,0,-25.7245	1/2:133:0,73,58:0:0:73,58:2558,1604:-319.926,-111.823,-89.8479,-208.149,0,-190.689	1/1:55:0,55,0:0:0:55,0:1887,0:-170.081,-16.5567,0,-170.08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chr08	31012992	.	A	G	34205.9	PASS	AB=0.509164;ABP=5.91559;AC=30;AF=0.16129;AN=186;AO=2049;CIGAR=1X;DP=11913;DPB=11913;DPRA=1.57199;EPP=4452.36;EPPR=21409.4;GTI=0;LEN=1;MEANALT=1.02564;MQM=59.98;MQMR=59.9978;NS=93;NUMALT=1;ODDS=1.76564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72919;QR=353182;RO=9862;RPL=2049;RPP=4452.36;RPPR=21409.4;RPR=0;RUN=1;SAF=2049;SAP=4452.36;SAR=0;SRF=9862;SRP=21418.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:168:168,0:168:6015:0:0:0,-50.573,-541.454	0/1:189:95,93:95:3403:93:3327:-242.693,0,-249.53	0/0:363:363,0:363:13025:0:0:0,-109.274,-1172.05	0/1:107:50,57:50:1796:57:2036:-151.302,0,-129.712	0/1:23:11,12:11:392:12:423:-31.4814,0,-28.6964	0/0:206:206,0:206:7377:0:0:0,-62.0122,-663.975	0/0:193:193,0:193:6923:0:0:0,-58.0988,-623.134	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:150:150,0:150:5371:0:0:0,-45.1545,-483.521	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:80:80,0:80:2843:0:0:0,-24.0824,-256.109	0/0:90:90,0:90:3223:0:0:0,-27.0927,-290.291	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.887	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:411:410,1:410:14659:1:36:0,-120.125,-1315.45	0/0:166:166,0:166:5938:0:0:0,-49.971,-534.527	0/1:204:66,138:66:2360:138:4913:-380.865,0,-151.249	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:166:91,75:91:3260:75:2668:-190.393,0,-243.65	0/0:155:155,0:155:5559:0:0:0,-46.6596,-500.432	0/1:398:205,193:205:7331:193:6876:-499.1,0,-540.03	0/1:218:110,108:110:3936:108:3839:-280.081,0,-288.808	0/1:32:17,15:17:608:15:523:-37.7655,0,-45.4191	0/0:428:427,1:427:15327:1:36:0,-125.243,-1375.54	0/0:158:150,8:150:5348:8:288:0,-21.2953,-455.188	0/1:193:93,100:93:3340:100:3567:-263.139,0,-242.718	.:.:.:.:.:.:.:.	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:3:1,2:1:27:2:72:-5.93363,0,-1.79669	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:201:201,0:201:7190:0:0:0,-60.507,-647.155	0/1:304:174,130:174:6248:130:4656:-327.689,0,-470.899	0/1:64:30,34:30:1076:34:1220:-90.8409,0,-77.8869	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:250:131,119:131:4716:119:4205:-303.375,0,-349.339	0/1:35:17,18:17:612:18:639:-47.3022,0,-44.8774	0/0:207:207,0:207:7416:0:0:0,-62.3132,-667.482	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:164:164,0:164:5876:0:0:0,-49.3689,-528.95	0/1:163:77,86:77:2764:86:3067:-227.183,0,-199.933	0/1:247:125,122:125:4476:122:4338:-316.243,0,-328.655	0/0:162:162,0:162:5824:0:0:0,-48.7669,-524.27	0/0:189:188,1:188:6713:1:36:0,-53.2964,-600.648	0/0:276:276,0:276:9904:0:0:0,-83.0843,-891.289	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	0/1:210:118,92:118:4219:92:3300:-234.002,0,-316.674	0/1:53:33,20:33:1184:20:708:-48.091,0,-90.9137	0/1:11:5,6:5:176:6:212:-16.1135,0,-12.8737	0/1:230:93,137:93:3323:137:4873:-369.485,0,-230.051	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:87:86,1:86:3084:1:36:0,-22.5913,-274.189	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:267:135,132:135:4816:132:4689:-341.795,0,-353.219	0/0:254:254,0:254:9104:0:0:0,-76.4616,-819.333	0/0:90:89,0:89:3192:0:0:0,-26.7917,-287.256	0/0:154:153,1:153:5500:1:36:0,-42.7603,-491.525	0/0:268:264,4:264:9459:4:140:0,-67.7315,-838.323	0/1:73:15,58:15:536:58:2075:-165.044,0,-26.5996	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/0:147:147,0:147:5242:0:0:0,-44.2514,-471.918	0/1:84:39,45:39:1396:45:1611:-119.993,0,-100.653	0/0:232:232,0:232:8328:0:0:0,-69.839,-749.524	0/0:233:232,1:232:8323:1:32:0,-66.9407,-745.875	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.571	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:195:195,0:195:7004:0:0:0,-58.7008,-630.42	0/1:164:89,75:89:3172:75:2658:-190.092,0,-236.334	0/0:423:420,3:420:15055:3:108:0,-117.261,-1344.59	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.898	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:125:125,0:125:4445:0:0:0,-37.6287,-400.222	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/1:75:41,34:41:1459:34:1192:-85.0051,0,-109.028	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/1:41:20,21:20:716:21:728:-53.4955,0,-52.4255	0/1:100:53,47:53:1874:47:1676:-121.024,0,-138.835	0/1:66:17,49:17:599:49:1724:-135.574,0,-34.3701	0/0:154:154,0:154:5503:0:0:0,-46.3586,-495.397	0/0:118:118,0:118:4220:0:0:0,-35.5215,-379.981
chr08	31021119	.	TTT	CTC,GTT	118338	PASS	AB=0.492443,0.504408;ABP=4.58557,3.54633;AC=155,31;AF=0.833333,0.166667;AN=186;AO=7798,1617;CIGAR=1X1M1X,1X2M;DP=9449;DPB=9454.33;DPRA=0,1.20923;EPP=16745.6,3436.54;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.72043,2.31579;MQM=24.5891,32.1707;MQMR=24;NS=93;NUMALT=2;ODDS=0.67848;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=276465,51799;QR=28;RO=1;RPL=7776,1608;RPP=16745.6,3436.54;RPPR=5.18177;RPR=22,9;RUN=1,1;SAF=0,0;SAP=16936.2,3514.28;SAR=7798,1617;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33,0:0:0:33,0:1148,0:-63.9107,-9.93399,0,-63.9107,-9.93399,-63.9107	1/1:127:0,127,0:0:0:127,0:4477,0:-243.842,-38.2308,0,-243.842,-38.2308,-243.842	1/2:83:0,36,47:0:0:36,47:1258,1334:-152.805,-93.4468,-82.6098,-59.5911,0,-45.4427	1/1:204:0,204,0:0:0:204,0:7205,0:-460.704,-61.4101,0,-460.704,-61.4101,-460.704	1/2:55:0,25,30:0:0:25,30:882,952:-113.52,-68.925,-61.3993,-44.8524,0,-35.8215	1/2:44:0,30,13:0:0:30,13:1072,377:-75.601,-26.5364,-17.5055,-49.0901,0,-45.1767	1/1:131:0,130,0:0:0:130,0:4618,0:-292.351,-39.1339,0,-292.351,-39.1339,-292.351	1/1:148:0,144,0:0:0:144,0:5086,0:-279.527,-43.3483,0,-279.527,-43.3483,-279.527	1/1:86:0,85,1:0:0:85,1:2984,29:-164.917,-25.5876,0,-162.878,-23.2893,-162.577	1/1:99:0,98,0:0:0:98,0:3456,0:-219.375,-29.5009,0,-219.375,-29.5009,-219.375	1/1:96:0,96,0:0:0:96,0:3412,0:-214.875,-28.8989,0,-214.875,-28.8989,-214.875	1/1:99:0,99,0:0:0:99,0:3518,0:-191.866,-29.802,0,-191.866,-29.802,-191.866	1/1:76:0,76,0:0:0:76,0:2720,0:-147.813,-22.8783,0,-147.813,-22.8783,-147.813	1/1:112:0,112,0:0:0:112,0:3946,0:-235.035,-33.7154,0,-235.035,-33.7154,-235.035	1/1:70:0,70,0:0:0:70,0:2490,0:-157.753,-21.0721,0,-157.753,-21.0721,-157.753	1/1:71:0,70,0:0:0:70,0:2488,0:-145.956,-21.0721,0,-145.956,-21.0721,-145.956	1/1:99:0,99,0:0:0:99,0:3532,0:-191.883,-29.802,0,-191.883,-29.802,-191.883	1/1:72:0,72,0:0:0:72,0:2529,0:-139.175,-21.6742,0,-139.175,-21.6742,-139.175	1/1:45:0,45,0:0:0:45,0:1613,0:-87.1105,-13.5464,0,-87.1105,-13.5464,-87.1105	1/1:149:0,149,0:0:0:149,0:5301,0:-330.31,-44.8535,0,-330.31,-44.8535,-330.31	1/1:129:0,128,0:0:0:128,0:4521,0:-268.035,-38.5318,0,-268.035,-38.5318,-268.035	1/2:102:0,38,64:0:0:38,64:1348,2236:-245.03,-165.787,-154.348,-79.5289,0,-60.263	1/1:83:0,83,0:0:0:83,0:2932,0:-183.71,-24.9855,0,-183.71,-24.9855,-183.71	1/2:140:0,81,58:0:0:81,58:2887,1808:-276.144,-129.112,-104.729,-146.965,0,-129.506	1/1:67:0,67,0:0:0:67,0:2386,0:-140.66,-20.169,0,-140.66,-20.169,-140.66	1/2:419:0,211,206:0:0:211,206:7487,7305:-982.329,-540.355,-476.837,-442.098,0,-380.086	1/2:172:1,77,94:1:28:77,94:2752,2929:-347.051,-208.357,-186.906,-137.296,0,-110.728	1/2:48:0,20,28:0:0:20,28:720,873:-98.6561,-62.8428,-56.8222,-36.0662,0,-27.6374	1/1:236:0,236,0:0:0:236,0:8317,0:-568.232,-71.0431,0,-568.232,-71.0431,-568.232	1/1:142:0,137,4:0:0:137,4:4868,128:-286.184,-41.2411,0,-276.95,-31.9121,-275.746	1/2:143:0,79,63:0:0:79,63:2789,2081:-304.914,-151.733,-127.952,-153.247,0,-134.282	1/2:4:0,1,3:0:0:1,3:36,100:-9.40634,-7.58767,-7.28664,-2.0725,0,-1.16941	1/1:27:0,27,0:0:0:27,0:964,0:-57.6349,-8.12781,0,-57.6349,-8.12781,-57.6349	1/2:6:0,5,1:0:0:5,1:180,29:-10.5826,-2.29821,-0.793063,-8.53734,0,-8.23631	1/1:6:0,6,0:0:0:6,0:208,0:-11.9341,-1.80618,0,-11.9341,-1.80618,-11.9341	1/1:10:0,10,0:0:0:10,0:351,0:-19.6448,-3.0103,0,-19.6448,-3.0103,-19.6448	1/1:276:0,276,0:0:0:276,0:9786,0:-665.509,-83.0843,0,-665.509,-83.0843,-665.509	1/2:241:0,134,107:0:0:134,107:4743,3336:-478.33,-239.562,-199.224,-239.028,0,-206.817	1/2:85:0,48,37:0:0:48,37:1722,1057:-153.286,-74.4365,-59.987,-79.0879,0,-67.9498	.:.:.:.:.:.:.:.	1/2:140:0,73,66:0:0:73,66:2582,2065:-278.406,-148.226,-126.251,-130.267,0,-110.399	1/2:37:0,25,12:0:0:25,12:898,381:-72.6796,-27.7155,-20.1898,-45.2339,0,-41.6216	1/1:134:0,131,0:0:0:131,0:4645,0:-272.226,-39.4349,0,-272.226,-39.4349,-272.226	1/1:94:0,93,0:0:0:93,0:3287,0:-208.838,-27.9958,0,-208.838,-27.9958,-208.838	1/1:84:0,84,0:0:0:84,0:2986,0:-189.393,-25.2865,0,-189.393,-25.2865,-189.393	1/1:58:0,58,0:0:0:58,0:2064,0:-141.123,-17.4597,0,-141.123,-17.4597,-141.123	1/2:88:0,49,39:0:0:49,39:1711,1112:-158.527,-78.0408,-63.2904,-80.7238,0,-68.9836	1/2:168:0,57,111:0:0:57,111:1960,3694:-379.132,-270.046,-252.887,-109.352,0,-75.938	1/1:113:0,113,0:0:0:113,0:4009,0:-251.4,-34.0164,0,-251.4,-34.0164,-251.4	1/1:188:0,186,0:0:0:186,0:6609,0:-415.764,-55.9916,0,-415.764,-55.9916,-415.764	1/1:183:0,182,0:0:0:182,0:6449,0:-440.397,-54.7875,0,-440.397,-54.7875,-440.397	1/2:21:0,12,9:0:0:12,9:432,299:-45.558,-22.0654,-18.4531,-23.7729,0,-21.0637	1/2:122:0,65,57:0:0:65,57:2309,1649:-222.721,-116.349,-96.782,-106.611,0,-89.4524	1/2:35:0,17,18:0:0:17,18:604,589:-78.9268,-42.9681,-37.8506,-36.241,0,-30.8225	1/2:14:0,10,4:0:0:10,4:360,121:-25.0317,-8.87541,-5.86511,-16.4119,0,-15.2077	1/2:119:0,55,64:0:0:55,64:1935,2013:-242.775,-144.86,-128.303,-98.1706,0,-78.9046	1/1:27:0,26,0:0:0:26,0:917,0:-59.1859,-7.82678,0,-59.1859,-7.82678,-59.1859	1/1:10:0,10,0:0:0:10,0:343,0: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chr08	31040490	.	GTCAAAG	ATCGAAA,ATCAAAG	204290	PASS	AB=0.411259,0.585223;ABP=177.981,164.382;AC=155,31;AF=0.833333,0.166667;AN=186;AO=6393,1575;CIGAR=1X2M1X2M1X,1X6M;DP=8010;DPB=8025;DPRA=0,1.21695;EPP=7760.54,1880.66;EPPR=0;GTI=3;LEN=7,1;MEANALT=1.82796,2.33333;MQM=59.442,59.9892;MQMR=0;NS=93;NUMALT=2;ODDS=1.27965;PAIRED=0,0;PAIREDR=0;PAO=30,0;PQA=954,0;PQR=0;PRO=0;QA=224171,56287;QR=0;RO=0;RPL=5586,802;RPP=7760.54,4.1698;RPPR=0;RPR=807,773;RUN=1,1;SAF=6393,1006;SAP=13885.2,266.302;SAR=0,569;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:0,76,0:0:0:76,0:2646,0:-238.344,-22.8783,0,-238.344,-22.8783,-238.344	1/1:53:0,53,0:0:0:53,0:1840,0:-165.433,-15.9546,0,-165.433,-15.9546,-165.433	1/2:144:0,78,65:0:0:78,65:2726,2332:-411.851,-190.254,-166.774,-221.633,0,-202.066	1/1:258:0,257,1:0:0:257,1:9012,36:-810.553,-77.3647,0,-807.616,-74.0675,-807.315	1/2:83:0,24,59:0:0:24,59:830,2104:-239.31,-171.869,-164.644,-67.7896,0,-50.0288	1/2:38:0,10,28:0:0:10,28:360,1008:-111.651,-82.2943,-79.284,-29.3971,0,-20.9683	1/1:85:0,85,0:0:0:85,0:2995,0:-269.747,-25.5876,0,-269.747,-25.5876,-269.747	1/1:144:0,144,0:0:0:144,0:4965,0:-445.497,-43.3483,0,-445.497,-43.3483,-445.497	1/1:120:0,120,0:0:0:120,0:4186,0:-376.083,-36.1236,0,-376.083,-36.1236,-376.083	1/1:67:0,66,0:0:0:66,0:2291,0:-206.118,-19.868,0,-206.118,-19.868,-206.118	1/1:81:0,81,0:0:0:81,0:2870,0:-258.166,-24.3834,0,-258.166,-24.3834,-258.166	1/1:138:0,137,0:0:0:137,0:4825,0:-433.002,-41.2411,0,-433.002,-41.2411,-433.002	1/1:85:0,84,0:0:0:84,0:2947,0:-265.037,-25.2865,0,-265.037,-25.2865,-265.037	1/1:46:0,46,0:0:0:46,0:1606,0:-144.816,-13.8474,0,-144.816,-13.8474,-144.816	1/1:86:0,85,0:0:0:85,0:3008,0:-269.941,-25.5876,0,-269.941,-25.5876,-269.941	1/1:70:0,69,0:0:0:69,0:2442,0:-219.613,-20.7711,0,-219.613,-20.7711,-219.613	1/1:26:0,26,0:0:0:26,0:917,0:-82.5138,-7.82678,0,-82.5138,-7.82678,-82.5138	1/1:36:0,35,0:0:0:35,0:1248,0:-112.307,-10.5361,0,-112.307,-10.5361,-112.307	1/1:40:0,40,0:0:0:40,0:1407,0:-126.909,-12.0412,0,-126.909,-12.0412,-126.909	1/1:102:0,101,0:0:0:101,0:3574,0:-321.542,-30.404,0,-321.542,-30.404,-321.542	1/1:208:0,208,0:0:0:208,0:7265,0:-653.695,-62.6142,0,-653.695,-62.6142,-653.695	2/2:71:0,6,64:0:0:6,64:207,2284:-205.468,-188.653,-186.847,-19.2659,-2.46225,0	1/1:107:0,106,0:0:0:106,0:3693,0:-332.348,-31.9092,0,-332.348,-31.9092,-332.348	1/2:61:0,20,40:0:0:20,40:701,1425:-173.176,-116.145,-110.124,-57.024,0,-44.9828	1/1:72:0,71,0:0:0:71,0:2469,0:-222.081,-21.3731,0,-222.081,-21.3731,-222.081	1/2:278:0,100,178:0:0:100,178:3480,6319:-798.187,-515.223,-485.12,-283.314,0,-229.731	1/1:170:0,168,2:0:0:168,2:5882,72:-529.12,-50.573,0,-523.245,-44.3384,-522.643	1/2:61:0,21,40:0:0:21,40:739,1436:-177.641,-117.496,-111.175,-60.4986,0,-48.4574	1/1:142:0,142,0:0:0:142,0:4987,0:-448.973,-42.7463,0,-448.973,-42.7463,-448.973	1/1:86:0,79,7:0:0:79,7:2763,252:-248.329,-23.7814,0,-227.767,-2.85962,-225.659	1/2:137:0,66,70:0:0:66,70:2333,2488:-392.729,-202.74,-182.872,-189.983,0,-168.911	1/2:3:0,2,1:0:0:2,1:72,36:-9.16364,-3.29724,-2.69518,-6.22607,0,-5.92504	1/1:15:0,15,0:0:0:15,0:539,0:-48.838,-4.51545,0,-48.838,-4.51545,-48.838	1/2:6:0,5,1:0:0:5,1:179,36:-17.893,-3.29724,-1.79209,-14.9552,0,-14.6542	1/1:9:0,9,0:0:0:9,0:309,0:-27.9014,-2.70927,0,-27.9014,-2.70927,-27.9014	1/1:19:0,19,0:0:0:19,0:667,0:-60.3033,-5.71957,0,-60.3033,-5.71957,-60.3033	1/1:182:0,182,0:0:0:182,0:6438,0:-579.494,-54.7875,0,-579.494,-54.7875,-579.494	1/2:51:0,18,33:0:0:18,33:601,1161:-143.487,-94.8607,-89.4422,-48.9662,0,-39.0322	1/2:54:0,30,24:0:0:30,24:1062,856:-156.331,-69.8275,-60.7966,-86.5487,0,-79.324	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:150:0,66,83:0:0:66,83:2317,2964:-430.24,-241.688,-221.82,-188.585,0,-163.6	1/2:57:0,18,38:0:0:18,38:625,1360:-161.698,-110.903,-105.484,-50.7876,0,-39.3485	1/1:180:0,178,0:0:0:178,0:6223,0:-559.563,-53.5833,0,-559.563,-53.5833,-559.563	1/1:53:0,52,0:0:0:52,0:1834,0:-165.045,-15.6536,0,-165.045,-15.6536,-165.045	1/1:63:0,62,0:0:0:62,0:2184,0:-196.403,-18.6639,0,-196.403,-18.6639,-196.403	1/1:78:0,77,0:0:0:77,0:2681,0:-241.278,-23.1793,0,-241.278,-23.1793,-241.278	1/2:81:0,41,40:0:0:41,40:1445,1432:-234.357,-116.786,-104.444,-117.575,0,-105.534	1/2:133:0,34,99:0:0:34,99:1183,3531:-384.377,-288.198,-277.963,-96.5287,0,-66.7268	1/1:68:0,68,0:0:0:68,0:2383,0:-214.719,-20.47,0,-214.719,-20.47,-214.719	1/1:113:0,111,1:0:0:111,1:3907,36:-351.375,-33.4143,0,-348.438,-30.4409,-348.137	1/1:108:0,106,0:0:0:106,0:3736,0:-336.093,-31.9092,0,-336.093,-31.9092,-336.093	1/2:11:0,1,10:0:0:1,10:36,360:-32.6714,-29.734,-29.433,-3.29724,0,-0.286945	1/2:103:0,53,49:0:0:53,49:1844,1752:-292.726,-142.95,-126.996,-149.864,0,-135.113	1/2:106:0,57,49:0:0:57,49:1988,1763:-305.633,-144.203,-127.045,-161.784,0,-147.034	1/2:4:0,3,1:0:0:3,1:107,36:-12.0173,-3.29724,-2.39415,-9.07908,0,-8.77805	1/2:170:0,79,91:0:0:79,91:2739,3251:-488.013,-265.417,-241.636,-222.947,0,-195.554	1/1:64:0,62,0:0:0:62,0:2175,0:-195.647,-18.6639,0,-195.647,-18.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chr08	31076354	.	G	A	19881.2	PASS	AB=0.552239;ABP=52.2411;AC=29;AF=0.154255;AN=188;AO=1161;CIGAR=1X;DP=6522;DPB=6522;DPRA=1.10143;EPP=2524.09;EPPR=11639.9;GTI=1;LEN=1;MEANALT=1;MQM=58.5909;MQMR=38.2026;NS=94;NUMALT=1;ODDS=0.896762;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41611;QR=191460;RO=5359;RPL=0;RPP=2524.09;RPPR=11639.9;RPR=1161;RUN=1;SAF=1161;SAP=2524.09;SAR=0;SRF=5359;SRP=11639.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:43,1:43:1536:1:36:0,-10.5091,-123.086	0/0:72:72,0:72:2580:0:0:0,-21.6742,-210.138	0/1:124:55,69:55:1976:69:2476:-185.702,0,-125.048	0/0:124:124,0:124:4414:0:0:0,-37.3277,-375.946	0/1:17:9,8:9:324:8:288:-21.0591,0,-22.6608	0/1:25:15,10:15:532:10:360:-25.2094,0,-35.6993	0/0:69:68,0:68:2425:0:0:0,-20.47,-208.753	0/0:65:65,0:65:2291:0:0:0,-19.5669,-187.697	0/0:92:92,0:92:3300:0:0:0,-27.6948,-270.321	0/0:73:73,0:73:2590:0:0:0,-21.9752,-221.575	0/0:54:54,0:54:1940:0:0:0,-16.2556,-164.899	0/0:96:95,1:95:3400:1:36:0,-26.1627,-276.203	0/0:82:82,0:82:2944:0:0:0,-24.6845,-241.144	0/0:41:41,0:41:1476:0:0:0,-12.3422,-123.14	0/0:55:55,0:55:1972:0:0:0,-16.5566,-166.897	0/0:75:75,0:75:2692:0:0:0,-22.5772,-225.299	0/0:28:28,0:28:1004:0:0:0,-8.42884,-83.0431	0/0:24:24,0:24:864:0:0:0,-7.22472,-71.5888	0/0:25:25,0:25:881:0:0:0,-7.52575,-73.1333	0/0:73:73,0:73:2597:0:0:0,-21.9752,-221.969	0/0:72:72,0:72:2584:0:0:0,-21.6742,-217.295	0/1:57:16,41:16:572:41:1460:-114.52,0,-32.7749	0/0:84:84,0:84:2989:0:0:0,-25.2865,-254.484	0/1:43:23,20:23:813:20:720:-52.1845,0,-54.9126	0/0:74:73,0:73:2624:0:0:0,-21.9752,-221.301	0/1:199:78,121:78:2777:121:4352:-331.905,0,-181.941	0/0:207:207,0:207:7425:0:0:0,-62.3132,-623.746	0/1:26:12,14:12:432:14:500:-37.4643,0,-27.3525	0/0:180:180,0:180:6446:0:0:0,-54.1854,-558.442	0/0:118:115,3:115:4117:3:108:0,-25.4464,-334.052	0/1:94:43,51:43:1529:51:1832:-136.822,0,-102.293	0/1:20:5,15:5:180:15:540:-42.8459,0,-9.67	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.3265	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.26815	0/0:16:16,0:16:576:0:0:0,-4.81648,-45.5815	0/0:13:13,0:13:468:0:0:0,-3.91339,-38.0884	0/0:141:141,0:141:5045:0:0:0,-42.4452,-437.881	0/1:114:40,74:40:1440:74:2649:-203.101,0,-86.1234	0/1:52:19,33:19:680:33:1184:-90.974,0,-40.4088	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.1874	0/1:100:53,47:53:1896:47:1688:-121.966,0,-126.801	0/1:28:18,10:18:633:10:352:-23.5746,0,-43.333	0/0:94:94,0:94:3349:0:0:0,-28.2968,-280.429	0/0:39:39,0:39:1396:0:0:0,-11.7402,-119.596	0/0:43:43,0:43:1525:0:0:0,-12.9443,-132.3	0/0:99:99,0:99:3537:0:0:0,-29.802,-308.325	0/1:70:35,35:35:1256:35:1256:-92.1106,0,-80.9569	0/1:135:63,72:63:2260:72:2572:-190.927,0,-153.202	0/0:64:64,0:64:2296:0:0:0,-19.2659,-197.381	0/0:61:61,0:61:2192:0:0:0,-18.3628,-188.814	0/0:74:74,0:74:2664:0:0:0,-22.2762,-232.675	0/1:12:6,6:6:216:6:201:-14.8047,0,-15.326	0/1:119:66,53:66:2368:53:1900:-135.398,0,-159.214	0/1:60:37,23:37:1294:23:824:-56.4215,0,-95.5417	0/1:20:10,10:10:356:10:360:-26.7145,0,-23.778	0/1:91:36,55:36:1296:55:1976:-150.137,0,-82.6233	0/0:45:44,1:44:1584:1:36:0,-9.94807,-132.468	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.2166	0/0:13:13,0:13:464:0:0:0,-3.91339,-40.9554	0/0:67:64,3:64:2289:3:108:0,-10.0948,-180.852	0/0:81:81,0:81:2896:0:0:0,-24.3834,-248.581	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.7816	0/1:153:84,69:84:3005:69:2476:-177.002,0,-214.573	0/0:106:106,0:106:3800:0:0:0,-31.9092,-325.858	0/0:32:32,0:32:1137:0:0:0,-9.63296,-94.5367	0/0:41:41,0:41:1468:0:0:0,-12.3422,-125.411	0/0:89:89,0:89:3180:0:0:0,-26.7917,-271.068	0/0:99:99,0:99:3533:0:0:0,-29.802,-304.263	0/0:45:45,0:45:1608:0:0:0,-13.5463,-134.573	0/0:43:43,0:43:1540:0:0:0,-12.9443,-127.053	0/0:41:41,0:41:1476:0:0:0,-12.3422,-129.1	0/1:23:14,9:14:504:9:324:-22.5822,0,-36.1078	0/0:112:112,0:112:4024:0:0:0,-33.7154,-330.105	0/1:82:38,44:38:1334:44:1576:-116.544,0,-85.454	0/0:145:145,0:145:5109:0:0:0,-43.6493,-430.633	0/0:118:117,1:117:4170:1:32:0,-32.3222,-353.306	0/0:126:126,0:126:4505:0:0:0,-37.9298,-366.052	0/0:49:46,3:46:1625:3:108:0,-4.67812,-124.081	0/1:15:5,10:5:180:10:360:-28.2197,0,-10.6601	0/0:53:53,0:53:1900:0:0:0,-15.9546,-160.165	0/1:84:27,57:27:972:57:2040:-158.264,0,-55.109	0/0:139:139,0:139:4939:0:0:0,-41.8432,-420.9	0/0:58:58,0:58:2069:0:0:0,-17.4597,-176.951	0/0:74:74,0:74:2633:0:0:0,-22.2762,-225.304	0/0:34:34,0:34:1190:0:0:0,-10.235,-102.351	0/0:105:104,1:104:3717:1:36:0,-28.0099,-316.568	0/0:20:20,0:20:720:0:0:0,-6.0206,-58.3439	0/1:78:32,46:32:1148:46:1648:-125.054,0,-70.4985	0/0:57:57,0:57:2029:0:0:0,-17.1587,-167.402	0/1:66:28,38:28:1004:38:1353:-102.155,0,-63.5259	0/1:113:43,70:43:1544:70:2516:-192.054,0,-94.7717	0/1:57:20,37:20:705:37:1328:-102.629,0,-44.1369	0/0:70:70,0:70:2493:0:0:0,-21.0721,-212.681	0/0:90:90,0:90:3205:0:0:0,-27.0927,-274.958
chr08	31076360	.	GAAT	AAAG,GAAC	134159	PASS	AB=0.448755,0.54933;ABP=50.6371,47.1428;AC=159,29;AF=0.845745,0.154255;AN=188;AO=5418,1159;CIGAR=1X2M1X,3M1X;DP=6599;DPB=6599.25;DPRA=0,1.09251;EPP=11768,2519.75;EPPR=5.18177;GTI=1;LEN=4,1;MEANALT=1.57447,2.2;MQM=38.168,58.6808;MQMR=60;NS=94;NUMALT=2;ODDS=0.524521;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=193152,41564;QR=36;RO=1;RPL=0,0;RPP=11768,2519.75;RPPR=5.18177;RPR=5418,1159;RUN=1,1;SAF=5418,1159;SAP=11768,2519.75;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46,0:0:0:46,0:1640,0:-134.184,-13.8474,0,-134.184,-13.8474,-134.184	1/1:72:0,72,0:0:0:72,0:2582,0:-210.306,-21.6742,0,-210.306,-21.6742,-210.306	1/2:125:0,55,69:0:0:55,69:1976,2476:-347.436,-201.928,-185.371,-145.519,0,-124.748	1/1:125:0,125,0:0:0:125,0:4429,0:-378.128,-37.6288,0,-378.128,-37.6288,-378.128	1/2:17:0,9,8:0:0:9,8:324,288:-48.4881,-23.7684,-21.0591,-25.069,0,-22.6608	1/2:25:0,15,10:0:0:15,10:532,360:-68.0914,-29.7248,-25.2094,-38.7096,0,-35.6993	1/1:73:0,73,0:0:0:73,0:2611,0:-224.31,-21.9752,0,-224.31,-21.9752,-224.31	1/1:67:0,67,0:0:0:67,0:2392,0:-196.009,-20.169,0,-196.009,-20.169,-196.009	1/1:95:0,95,0:0:0:95,0:3383,0:-277.226,-28.5979,0,-277.226,-28.5979,-277.226	1/1:73:0,73,0:0:0:73,0:2618,0:-223.471,-21.9752,0,-223.471,-21.9752,-223.471	1/1:54:0,53,0:0:0:53,0:1898,0:-161.31,-15.9546,0,-161.31,-15.9546,-161.31	1/1:98:0,98,0:0:0:98,0:3500,0:-286.927,-29.5009,0,-286.927,-29.5009,-286.927	1/1:82:0,82,0:0:0:82,0:2934,0:-240.622,-24.6845,0,-240.622,-24.6845,-240.622	1/1:41:0,39,0:0:0:39,0:1400,0:-117.308,-11.7402,0,-117.308,-11.7402,-117.308	1/1:56:0,56,0:0:0:56,0:1994,0:-168.986,-16.8577,0,-168.986,-16.8577,-168.986	1/1:75:0,75,0:0:0:75,0:2685,0:-224.937,-22.5773,0,-224.937,-22.5773,-224.937	1/1:28:0,28,0:0:0:28,0:1006,0:-83.1685,-8.42884,0,-83.1685,-8.42884,-83.1685	1/1:24:0,24,0:0:0:24,0:863,0:-71.541,-7.22472,0,-71.541,-7.22472,-71.541	1/1:25:0,25,0:0:0:25,0:887,0:-73.667,-7.52575,0,-73.667,-7.52575,-73.667	1/1:74:0,74,0:0:0:74,0:2654,0:-226.553,-22.2762,0,-226.553,-22.2762,-226.553	1/1:73:0,73,0:0:0:73,0:2600,0:-218.381,-21.9752,0,-218.381,-21.9752,-218.381	1/2:59:0,16,43:0:0:16,43:569,1548:-171.473,-126.651,-121.835,-45.1704,0,-32.2262	1/1:88:0,86,0:0:0:86,0:3061,0:-261.068,-25.8886,0,-261.068,-25.8886,-261.068	1/2:44:0,24,20:0:0:24,20:853,720:-122.918,-59.1082,-51.8835,-64.156,0,-58.1354	1/1:76:0,76,0:0:0:76,0:2717,0:-229.41,-22.8783,0,-229.41,-22.8783,-229.41	1/2:199:0,78,121:0:0:78,121:2786,4328:-572.016,-353.219,-329.739,-219.147,0,-182.722	1/1:208:0,208,0:0:0:208,0:7427,0:-625.175,-62.6142,0,-625.175,-62.6142,-625.175	1/2:27:0,12,15:0:0:12,15:432,540:-75.5588,-44.3309,-40.7185,-31.5669,0,-27.0514	1/1:183:0,183,0:0:0:183,0:6528,0:-566.354,-55.0885,0,-566.354,-55.0885,-566.354	1/1:120:0,115,3:0:0:115,3:4072,108:-342.661,-34.6185,0,-333.848,-25.74,-332.945	1/2:94:0,43,51:0:0:43,51:1530,1828:-266.242,-149.406,-136.462,-117.182,0,-101.829	1/2:20:0,4,15:0:0:4,15:144,536:-54.5376,-43.6302,-42.426,-10.8933,0,-6.37785	1/1:6:0,6,0:0:0:6,0:214,0:-18.2395,-1.80618,0,-18.2395,-1.80618,-18.2395	1/1:2:0,2,0:0:0:2,0:72,0:-6.26815,-0.60206,0,-6.26815,-0.60206,-6.26815	1/1:17:0,17,0:0:0:17,0:607,0:-48.0647,-5.11751,0,-48.0647,-5.11751,-48.0647	1/1:13:0,13,0:0:0:13,0:468,0:-38.0884,-3.91339,0,-38.0884,-3.91339,-38.0884	1/1:143:0,143,0:0:0:143,0:5109,0:-443.711,-43.0473,0,-443.711,-43.0473,-443.711	1/2:114:0,40,74:0:0:40,74:1432,2656:-323.412,-215.803,-203.761,-107.95,0,-85.674	1/2:52:0,19,33:0:0:19,33:676,1188:-146.826,-97.0532,-91.3337,-50.1097,0,-40.1757	1/1:6:0,6,0:0:0:6,0:216,0:-18.1874,-1.80618,0,-18.1874,-1.80618,-18.1874	1/2:100:0,53,47:0:0:53,47:1892,1692:-278.683,-138.281,-122.326,-140.747,0,-126.598	1/2:29:0,17,11:0:0:17,11:596,387:-75.2405,-31.5232,-26.4057,-43.7605,0,-40.4492	1/1:98:0,98,0:0:0:98,0:3479,0:-291.7,-29.5009,0,-291.7,-29.5009,-291.7	1/1:40:0,40,0:0:0:40,0:1430,0:-122.094,-12.0412,0,-122.094,-12.0412,-122.094	1/1:43:0,43,0:0:0:43,0:1536,0:-132.895,-12.9443,0,-132.895,-12.9443,-132.895	1/1:104:0,103,0:0:0:103,0:3670,0:-318.808,-31.0061,0,-318.808,-31.0061,-318.808	1/2:69:0,35,34:0:0:35,34:1237,1224:-190.661,-100.199,-89.6627,-90.8031,0,-80.5681	1/2:135:0,62,72:0:0:62,72:2205,2580:-380.777,-210.268,-191.604,-170.497,0,-148.823	1/1:65:0,65,0:0:0:65,0:2318,0:-199.67,-19.567,0,-199.67,-19.567,-199.67	1/1:61:0,61,0:0:0:61,0:2177,0:-187.671,-18.3628,0,-187.671,-18.3628,-187.671	1/1:76:0,76,0:0:0:76,0:2722,0:-237.917,-22.8783,0,-237.917,-22.8783,-237.917	1/2:12:0,6,6:0:0:6,6:216,212:-34.4021,-17.6186,-15.8124,-17.1322,0,-15.326	1/2:119:0,67,52:0:0:67,52:2381,1864:-328.443,-152.312,-132.143,-176.474,0,-160.821	1/2:60:0,37,23:0:0:37,23:1317,828:-171.578,-67.9204,-56.7823,-104.012,0,-97.0881	1/2:20:0,10,10:0:0:10,10:348,360:-55.5899,-29.7248,-26.7145,-26.2055,0,-23.1952	1/2:93:0,38,55:0:0:38,55:1338,1980:-263.597,-161.333,-149.894,-102.607,0,-86.0501	1/1:46:0,45,1:0:0:45,1:1597,36:-137.082,-13.5464,0,-134.144,-10.2491,-133.843	1/1:4:0,4,0:0:0:4,0:144,0:-12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chr08	31076377	.	C	T	106659	PASS	AB=0.444286;ABP=59.6299;AC=159;AF=0.845745;AN=188;AO=5366;CIGAR=1X;DP=6549;DPB=6549;DPRA=0;EPP=11655.1;EPPR=2550.18;GTI=1;LEN=1;MEANALT=1.02128;MQM=38.1841;MQMR=58.7544;NS=94;NUMALT=1;ODDS=1.41173;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192209;QR=42241;RO=1181;RPL=0;RPP=11655.1;RPPR=2550.18;RPR=5366;RUN=1;SAF=5366;SAP=11655.1;SAR=0;SRF=1181;SRP=2567.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1608:-131.901,-13.5464,0	1/1:71:0,71:0:0:71:2552:-207.686,-21.3731,0	0/1:125:70,55:70:2498:55:1972:-124.713,0,-187.38	1/1:123:0,123:0:0:123:4407:-375.596,-37.0267,0	0/1:17:8,9:8:288:9:324:-22.6608,0,-21.0591	0/1:26:11,15:11:396:15:540:-35.8416,0,-28.1468	1/1:70:0,70:0:0:70:2503:-215.3,-21.0721,0	1/1:66:0,66:0:0:66:2372:-193.945,-19.868,0	1/1:93:0,93:0:0:93:3328:-272.123,-27.9958,0	1/1:72:0,72:0:0:72:2588:-220.708,-21.6742,0	1/1:53:0,53:0:0:53:1899:-162.064,-15.9546,0	1/1:97:0,97:0:0:97:3480:-284.978,-29.1999,0	1/1:81:0,81:0:0:81:2912:-238.395,-24.3834,0	1/1:41:0,41:0:0:41:1476:-123.14,-12.3422,0	1/1:53:0,53:0:0:53:1896:-161.234,-15.9546,0	1/1:75:0,75:0:0:75:2691:-225.226,-22.5773,0	1/1:28:0,28:0:0:28:1008:-83.264,-8.42884,0	1/1:24:0,24:0:0:24:860:-71.3678,-7.22472,0	1/1:24:0,24:0:0:24:855:-70.9,-7.22472,0	1/1:74:0,74:0:0:74:2639:-225.61,-22.2762,0	1/1:70:0,70:0:0:70:2487:-209.673,-21.0721,0	0/1:58:42,16:42:1508:16:576:-32.7857,0,-118.537	1/1:86:0,86:0:0:86:3067:-260.578,-25.8886,0	0/1:44:20,24:20:720:24:864:-58.8328,0,-51.8835	1/1:71:0,71:0:0:71:2534:-213.939,-21.3731,0	0/1:202:124,77:124:4417:77:2733:-177.199,0,-336.802	1/1:205:0,205:0:0:205:7359:-618.193,-61.7112,0	0/1:27:15,12:15:536:12:432:-27.0514,0,-40.3568	1/1:181:0,181:0:0:181:6512:-563.76,-54.4864,0	1/1:118:3,115:3:108:115:4115:-335.458,-25.4464,0	0/1:98:55,43:55:1980:43:1535:-100.647,0,-148.931	0/1:19:14,5:14:500:5:180:-9.97103,0,-39.5465	1/1:6:0,6:0:0:6:207:-17.8923,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.26815,-0.60206,0	1/1:17:0,17:0:0:17:612:-48.1926,-5.11751,0	1/1:13:0,13:0:0:13:468:-38.0884,-3.91339,0	1/1:140:1,139:1:36:139:4981:-429.123,-38.555,0	0/1:114:74,40:74:2640:40:1431:-86.0483,0,-202.277	0/1:52:33,19:33:1188:19:684:-40.6301,0,-91.3337	1/1:6:0,6:0:0:6:216:-18.1874,-1.80618,0	0/1:99:47,52:47:1671:52:1863:-124.482,0,-120.737	0/1:29:11,18:11:388:18:644:-43.8952,0,-26.5275	1/1:97:0,97:0:0:97:3479:-291.403,-29.1999,0	1/1:39:0,39:0:0:39:1404:-120.368,-11.7402,0	1/1:44:1,43:1:36:43:1548:-130.318,-9.64964,0	1/1:101:0,101:0:0:101:3619:-314.511,-30.404,0	0/1:71:36,35:36:1292:35:1240:-80.047,0,-95.1203	0/1:137:73,63:73:2600:63:2265:-152.991,0,-192.817	1/1:65:0,65:0:0:65:2340:-201.064,-19.567,0	1/1:61:0,61:0:0:61:2192:-188.844,-18.3628,0	1/1:74:0,74:0:0:74:2660:-232.365,-22.2762,0	0/1:12:6,6:6:208:6:216:-15.326,0,-15.4467	0/1:120:54,66:54:1916:66:2372:-159.073,0,-136.518	0/1:63:27,36:27:972:36:1296:-94.1474,0,-68.833	0/1:20:10,10:10:356:10:360:-24.0005,0,-26.352	0/1:93:56,37:56:2012:37:1324:-84.5123,0,-153.263	1/1:46:1,45:1:36:45:1611:-134.946,-10.2491,0	1/1:4:0,4:0:0:4:144:-12.2166,-1.20412,0	1/1:13:0,13:0:0:13:468:-41.2443,-3.91339,0	1/1:65:3,62:3:108:62:2228:-175.666,-9.49272,0	1/1:84:1,83:1:36:83:2976:-250.814,-21.6882,0	1/1:4:0,4:0:0:4:144:-12.7816,-1.20412,0	0/1:155:69,86:69:2463:86:3066:-219.329,0,-175.23	1/1:105:0,105:0:0:105:3748:-321.814,-31.6082,0	1/1:31:0,31:0:0:31:1108:-91.7811,-9.33193,0	1/1:41:0,41:0:0:41:1468:-125.442,-12.3422,0	1/1:89:1,88:1:36:88:3151:-264.779,-23.1934,0	1/1:99:0,99:0:0:99:3556:-306.031,-29.802,0	1/1:47:0,47:0:0:47:1679:-140.386,-14.1484,0	1/1:44:0,44:0:0:44:1584:-130.463,-13.2453,0	1/1:42:0,42:0:0:42:1512:-132.253,-12.6433,0	0/1:22:9,13:9:320:13:459:-32.5952,0,-22.5197	1/1:113:0,113:0:0:113:4059:-332.221,-34.0164,0	0/1:83:43,40:43:1540:40:1423:-91.6409,0,-113.815	1/1:147:0,147:0:0:147:5233:-439.254,-44.2514,0	1/1:119:1,118:1:36:118:4240:-358.9,-32.2243,0	1/1:125:0,125:0:0:125:4445:-362.213,-37.6288,0	1/1:49:3,46:3:108:46:1643:-124.551,-4.67812,0	0/1:15:10,5:10:360:5:180:-10.6601,0,-28.2197	1/1:54:0,54:0:0:54:1935:-162.881,-16.2556,0	0/1:82:55,27:55:1972:27:972:-55.8117,0,-152.75	1/1:138:0,138:0:0:138:4948:-421.621,-41.5421,0	1/1:57:0,57:0:0:57:2035:-174.044,-17.1587,0	1/1:75:0,75:0:0:75:2675:-228.818,-22.5773,0	1/1:34:0,34:0:0:34:1224:-105.036,-10.235,0	1/1:102:1,101:1:36:101:3615:-307.335,-27.1068,0	1/1:20:0,20:0:0:20:703:-57.7662,-6.0206,0	0/1:79:47,32:47:1692:32:1152:-70.4183,0,-128.71	1/1:56:0,56:0:0:56:2013:-165.264,-16.8577,0	0/1:64:36,28:36:1292:28:1004:-64.128,0,-97.3178	0/1:114:71,43:71:2540:43:1532:-93.8226,0,-194.155	0/1:60:39,21:39:1400:21:756:-47.5735,0,-108.203	1/1:70:0,70:0:0:70:2487:-212.28,-21.0721,0	1/1:90:0,90:0:0:90:3236:-277.301,-27.0927,0
chr08	31076382	.	C	A	109129	PASS	AB=0.446029;ABP=56.2171;AC=159;AF=0.845745;AN=188;AO=5410;CIGAR=1X;DP=6593;DPB=6593;DPRA=0;EPP=11474.4;EPPR=2462.18;GTI=1;LEN=1;MEANALT=1.03191;MQM=38.1839;MQMR=58.7229;NS=94;NUMALT=1;ODDS=1.18522;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193685;QR=42191;RO=1180;RPL=32;RPP=11474.4;RPPR=2462.18;RPR=5378;RUN=1;SAF=5410;SAP=11750.7;SAR=0;SRF=1180;SRP=2565.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1652:-134.436,-13.8474,0	1/1:72:0,72:0:0:72:2562:-208.573,-21.6742,0	0/1:126:70,56:70:2499:56:2001:-126.636,0,-187.17	1/1:124:0,124:0:0:124:4447:-378.878,-37.3277,0	0/1:17:8,9:8:288:9:324:-22.6608,0,-21.0591	0/1:26:11,15:11:396:15:525:-34.7423,0,-28.1468	1/1:73:0,73:0:0:73:2628:-225.462,-21.9752,0	1/1:66:0,66:0:0:66:2361:-193.907,-19.868,0	1/1:94:0,94:0:0:94:3361:-274.78,-28.2968,0	1/1:73:0,73:0:0:73:2612:-223.317,-21.9752,0	1/1:54:0,54:0:0:54:1921:-163.645,-16.2556,0	1/1:98:0,98:0:0:98:3520:-287.88,-29.5009,0	1/1:82:0,82:0:0:82:2948:-241.364,-24.6845,0	1/1:41:0,41:0:0:41:1476:-123.14,-12.3422,0	1/1:56:0,55:0:0:55:1957:-165.554,-16.5567,0	1/1:75:0,75:0:0:75:2696:-225.556,-22.5773,0	1/1:28:0,28:0:0:28:1004:-83.0431,-8.42884,0	1/1:24:0,24:0:0:24:849:-70.4926,-7.22472,0	1/1:25:0,25:0:0:25:900:-74.3565,-7.52575,0	1/1:74:0,74:0:0:74:2626:-224.11,-22.2762,0	1/1:73:0,73:0:0:73:2609:-218.76,-21.9752,0	0/1:58:42,16:42:1500:16:576:-32.7857,0,-117.828	1/1:88:0,88:0:0:88:3141:-266.233,-26.4906,0	0/1:43:19,24:19:680:24:864:-59.1338,0,-48.5849	1/1:76:0,76:0:0:76:2720:-229.592,-22.8783,0	0/1:204:127,77:127:4504:77:2756:-178.854,0,-344.068	1/1:207:0,207:0:0:207:7433:-624.298,-62.3132,0	0/1:27:15,12:15:540:12:432:-27.0514,0,-40.7185	1/1:182:0,182:0:0:182:6521:-564.896,-54.7875,0	1/1:119:3,115:3:108:115:4120:-334.64,-25.7904,0	0/1:98:55,43:55:1950:43:1548:-101.634,0,-146.229	0/1:19:14,5:14:500:5:180:-9.97103,0,-39.5465	1/1:6:0,6:0:0:6:216:-18.3265,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.26815,-0.60206,0	1/1:17:0,17:0:0:17:612:-48.1926,-5.11751,0	1/1:13:0,13:0:0:13:468:-38.0884,-3.91339,0	1/1:141:0,141:0:0:141:5072:-440.455,-42.4452,0	0/1:113:73,40:73:2616:40:1425:-85.2547,0,-200.703	0/1:49:32,17:32:1137:17:612:-35.5946,0,-87.6469	1/1:6:0,6:0:0:6:216:-18.1874,-1.80618,0	0/1:100:47,53:47:1665:53:1893:-126.403,0,-119.895	0/1:29:11,18:11:392:18:644:-43.778,0,-26.8902	1/1:95:0,95:0:0:95:3411:-285.15,-28.5979,0	1/1:40:0,40:0:0:40:1410:-121.081,-12.0412,0	1/1:44:0,43:0:0:43:1548:-133.762,-12.9443,0	1/1:104:0,104:0:0:104:3736:-324.93,-31.3071,0	0/1:71:36,35:36:1292:35:1230:-78.6471,0,-95.0481	0/1:138:74,64:74:2624:64:2277:-154.124,0,-194.712	1/1:65:0,65:0:0:65:2321:-199.551,-19.567,0	1/1:61:0,61:0:0:61:2196:-189.101,-18.3628,0	1/1:76:0,76:0:0:76:2724:-238.049,-22.8783,0	0/1:12:6,6:6:212:6:216:-15.326,0,-15.8124	0/1:121:54,67:54:1944:67:2382:-159.735,0,-138.737	0/1:63:27,36:27:972:36:1269:-92.4877,0,-68.833	0/1:20:10,10:10:360:10:360:-24.0005,0,-26.7145	0/1:94:56,38:56:2004:38:1353:-86.568,0,-151.753	1/1:46:1,45:1:36:45:1605:-134.162,-10.2491,0	1/1:4:0,4:0:0:4:144:-12.2166,-1.20412,0	1/1:13:0,13:0:0:13:468:-41.2443,-3.91339,0	1/1:67:3,64:3:108:64:2288:-180.994,-10.0948,0	1/1:83:1,82:1:36:82:2948:-248.279,-21.3872,0	1/1:4:0,4:0:0:4:144:-12.7816,-1.20412,0	0/1:157:71,86:71:2536:86:3070:-219.015,0,-181.196	1/1:105:0,105:0:0:105:3761:-322.634,-31.6082,0	1/1:32:0,32:0:0:32:1137:-93.8874,-9.63296,0	1/1:40:0,40:0:0:40:1440:-124.128,-12.0412,0	1/1:87:2,85:2:72:85:3056:-253.108,-19.3641,0	1/1:99:0,99:0:0:99:3503:-301.782,-29.802,0	1/1:47:0,47:0:0:47:1684:-140.421,-14.1484,0	1/1:44:0,44:0:0:44:1584:-130.463,-13.2453,0	1/1:42:0,42:0:0:42:1504:-131.632,-12.6433,0	0/1:22:8,14:8:288:14:504:-36.4088,0,-19.6447	1/1:113:0,113:0:0:113:4067:-332.661,-34.0164,0	0/1:82:42,40:42:1508:40:1436:-92.7496,0,-111.261	1/1:147:0,147:0:0:147:5272:-441.347,-44.2514,0	1/1:118:1,117:1:36:117:4174:-353.59,-31.9233,0	1/1:126:0,126:0:0:126:4527:-368.475,-37.9298,0	1/1:49:3,46:3:108:46:1656:-125.243,-4.67812,0	0/1:15:10,5:10:360:5:165:-9.54462,0,-28.2197	1/1:54:0,54:0:0:54:1940:-163.274,-16.2556,0	0/1:82:54,28:54:1940:28:1000:-58.2384,0,-149.872	1/1:139:0,139:0:0:139:4985:-424.397,-41.8432,0	1/1:59:0,59:0:0:59:2124:-181.347,-17.7608,0	1/1:75:0,75:0:0:75:2677:-229.551,-22.5773,0	1/1:34:0,34:0:0:34:1216:-104.462,-10.235,0	1/1:105:1,104:1:36:104:3725:-316.707,-28.0099,0	1/1:20:0,20:0:0:20:707:-57.9874,-6.0206,0	0/1:79:47,32:47:1692:32:1152:-70.4183,0,-128.71	1/1:57:0,57:0:0:57:2049:-168.233,-17.1587,0	0/1:65:37,28:37:1332:28:1008:-64.0843,0,-100.571	0/1:114:71,43:71:2552:43:1548:-94.7277,0,-194.985	0/1:59:38,21:38:1368:21:756:-47.8746,0,-105.625	1/1:70:0,70:0:0:70:2482:-212.264,-21.0721,0	1/1:91:0,91:0:0:91:3246:-278.106,-27.3937,0
chr08	31301812	.	A	G	12935.4	PASS	AB=0.516443;ABP=6.86658;AC=29;AF=0.155914;AN=186;AO=858;CIGAR=1X;DP=5860;DPB=5860;DPRA=1.01837;EPP=1866.13;EPPR=10847.4;GTI=1;LEN=1;MEANALT=1;MQM=36.9872;MQMR=50.2433;NS=93;NUMALT=1;ODDS=0.787878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30624;QR=179318;RO=5002;RPL=16;RPP=1729.75;RPPR=10847.4;RPR=842;RUN=1;SAF=16;SAP=1729.75;SAR=842;SRF=0;SRP=10864.7;SRR=5002;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.3255	0/0:47:47,0:47:1688:0:0:0,-14.1484,-150.497	0/1:98:49,49:49:1752:49:1752:-116.625,0,-125.068	0/0:214:214,0:214:7667:0:0:0,-64.4204,-685.587	0/1:45:22,23:22:788:23:828:-52.5489,0,-56.7462	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.3826	0/0:67:66,1:66:2372:1:36:0,-16.8229,-209.37	0/0:87:87,0:87:3105:0:0:0,-26.1896,-278.131	0/0:45:45,0:45:1603:0:0:0,-13.5463,-143.744	0/0:74:74,0:74:2656:0:0:0,-22.2762,-238.2	0/0:41:41,0:41:1467:0:0:0,-12.3422,-131.803	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.215	0/0:55:55,0:55:1972:0:0:0,-16.5566,-176.583	0/0:53:53,0:53:1895:0:0:0,-15.9546,-168.945	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.338	0/0:30:30,0:30:1076:0:0:0,-9.0309,-95.6604	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.189	0/0:37:37,0:37:1324:0:0:0,-11.1381,-118.218	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.7347	0/0:391:391,0:391:14040:0:0:0,-117.703,-1255.69	0/0:61:61,0:61:2184:0:0:0,-18.3628,-193.812	0/1:66:17,49:17:612:49:1760:-127.029,0,-35.1061	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.001	0/1:58:25,33:25:896:33:1184:-80.837,0,-61.8388	0/0:51:51,0:51:1828:0:0:0,-15.3525,-162.099	0/1:178:88,90:88:3164:90:3211:-216.566,0,-230.444	0/0:80:80,0:80:2854:0:0:0,-24.0824,-252.847	0/1:42:20,22:20:716:22:788:-53.705,0,-51.1126	0/0:168:168,0:168:6016:0:0:0,-50.573,-538.897	0/0:89:87,2:87:3120:2:72:0,-20.434,-270.71	0/1:56:33,23:33:1188:23:824:-52.5021,0,-89.4197	0/1:5:4,1:4:144:1:36:-1.841,0,-11.2182	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.5006	0/1:2:1,1:1:36:1:36:-2.78554,0,-2.98717	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.44566	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.3627	0/0:109:109,0:109:3903:0:0:0,-32.8123,-350.088	0/1:121:81,40:81:2912:40:1432:-83.1361,0,-221.6	0/1:29:15,14:15:540:14:489:-32.9189,0,-40.0836	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4073	0/1:109:53,56:53:1900:56:1993:-132.992,0,-136.563	0/1:31:7,24:7:252:24:847:-62.1779,0,-13.149	0/0:92:92,0:92:3292:0:0:0,-27.6948,-291.152	0/0:42:42,0:42:1504:0:0:0,-12.6433,-134.386	0/0:38:38,0:38:1364:0:0:0,-11.4391,-121.307	0/0:91:91,0:91:3268:0:0:0,-27.3937,-292.825	0/1:48:23,25:23:819:25:896:-61.8528,0,-59.2132	0/1:77:50,27:50:1792:27:972:-58.4667,0,-136.786	0/0:68:68,0:68:2440:0:0:0,-20.47,-218.106	0/0:70:70,0:70:2503:0:0:0,-21.0721,-223.807	0/0:72:72,0:72:2588:0:0:0,-21.6742,-231.404	0/1:4:1,3:1:36:3:108:-8.16509,0,-2.36269	0/1:99:44,55:44:1580:55:1968:-137.3,0,-111.784	0/1:31:16,15:16:576:15:536:-35.139,0,-42.6916	0/1:9:6,3:6:216:3:108:-6.69334,0,-17.0315	0/1:79:34,45:34:1212:45:1608:-110.412,0,-84.2273	0/0:37:37,0:37:1332:0:0:0,-11.1381,-118.416	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.5188	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.5684	0/0:62:62,0:62:2232:0:0:0,-18.6639,-197.583	0/0:93:93,0:93:3344:0:0:0,-27.9958,-299.621	.:.:.:.:.:.:.:.	0/1:109:64,45:64:2304:45:1620:-103.191,0,-174.135	0/0:137:135,2:135:4833:2:72:0,-34.8834,-422.983	0/0:72:72,0:72:2570:0:0:0,-21.6742,-227.993	0/0:67:66,1:66:2363:1:36:0,-16.8229,-208.716	0/0:102:101,1:101:3613:1:36:0,-27.3589,-320.086	0/0:60:59,1:59:2106:1:36:0,-14.7157,-185.293	0/0:18:17,1:17:612:1:36:0,-2.07239,-51.5828	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.145	0/0:40:40,0:40:1436:0:0:0,-12.0412,-128.204	0/1:14:8,6:8:288:6:216:-14.1894,0,-21.7701	0/0:97:97,0:97:3484:0:0:0,-29.1999,-311.975	0/1:43:18,25:18:648:25:885:-61.4558,0,-45.3775	0/0:52:52,0:52:1864:0:0:0,-15.6536,-164.168	0/0:103:103,0:103:3685:0:0:0,-31.0061,-330.52	0/0:51:51,0:51:1827:0:0:0,-15.3525,-161.297	0/0:62:62,0:62:2223:0:0:0,-18.6639,-198.909	0/1:15:9,6:9:324:6:216:-14.1163,0,-24.9162	0/0:81:81,0:81:2916:0:0:0,-24.3834,-259.787	0/1:71:32,39:32:1148:39:1391:-96.4877,0,-80.8486	0/0:175:174,1:174:6231:1:21:0,-50.587,-556.057	0/0:71:71,0:71:2548:0:0:0,-21.3731,-228.55	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.051	0/0:35:35,0:35:1260:0:0:0,-10.536,-112.89	0/0:84:84,0:84:3012:0:0:0,-25.2865,-269.045	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.179	0/1:56:28,28:28:991:28:987:-66.6597,0,-72.0696	0/0:54:54,0:54:1936:0:0:0,-16.2556,-173.57	0/1:25:11,14:11:388:14:500:-34.1313,0,-27.4439	0/1:65:22,43:22:792:43:1540:-109.078,0,-50.7266	0/1:57:13,44:13:460:44:1548:-109.005,0,-23.7558	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.086	0/0:61:61,0:61:2196:0:0:0,-18.3628,-196.8
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chr08	31375753	.	G	T	23048.9	PASS	AB=0.515842;ABP=8.6521;AC=29;AF=0.155914;AN=186;AO=1349;CIGAR=1X;DP=8348;DPB=8348;DPRA=1.40164;EPP=2889.06;EPPR=14866.4;GTI=1;LEN=1;MEANALT=1.02632;MQM=60;MQMR=59.9931;NS=93;NUMALT=1;ODDS=0.482215;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48264;QR=248575;RO=6996;RPL=1344;RPP=2889.06;RPPR=14866.4;RPR=5;RUN=1;SAF=0;SAP=2932.33;SAR=1349;SRF=0;SRP=15194.6;SRR=6996;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2112:0:0:0,-18.0618,-190.347	0/0:59:59,0:59:2073:0:0:0,-17.7608,-186.839	0/1:141:73,68:73:2582:68:2436:-177.05,0,-190.184	0/0:235:234,1:234:8255:1:32:0,-67.5427,-739.776	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:113:113,0:113:4023:0:0:0,-34.0164,-362.258	0/0:130:129,1:129:4565:1:36:0,-35.5356,-407.421	0/0:121:120,1:120:4266:1:36:0,-32.8264,-380.522	0/0:84:84,0:84:2983:0:0:0,-25.2865,-268.703	0/0:45:45,0:45:1577:0:0:0,-13.5463,-142.218	0/0:87:87,0:87:3088:0:0:0,-26.1896,-278.147	0/0:66:65,0:65:2307:0:0:0,-19.5669,-207.531	0/0:49:49,0:49:1738:0:0:0,-14.7505,-156.703	0/0:60:60,0:60:2130:0:0:0,-18.0618,-191.967	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/0:26:26,0:26:912:0:0:0,-7.82678,-82.3931	0/0:158:157,0:157:5569:0:0:0,-47.2617,-500.978	0/0:142:142,0:142:5027:0:0:0,-42.7463,-452.58	0/1:91:35,56:35:1221:56:2012:-153.959,0,-82.7975	0/0:103:103,0:103:3670:0:0:0,-31.0061,-330.504	0/1:72:34,38:34:1220:38:1368:-101.747,0,-88.4326	0/0:63:63,0:63:2230:0:0:0,-18.9649,-200.963	0/1:254:110,144:110:3897:144:5164:-388.438,0,-274.464	0/0:220:218,2:218:7776:2:72:0,-59.3899,-693.038	0/1:32:13,19:13:464:19:684:-52.2574,0,-32.4645	0/0:230:230,0:230:8224:0:0:0,-69.2369,-740.173	0/0:122:120,2:120:4259:2:72:0,-29.8889,-376.652	0/1:103:48,55:48:1699:55:1968:-146.388,0,-122.189	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/0:144:144,0:144:5137:0:0:0,-43.3483,-462.472	0/1:156:73,83:73:2607:83:2980:-221.471,0,-187.917	0/1:40:23,17:23:811:17:608:-43.0108,0,-61.2688	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:173:87,86:87:3096:86:3092:-226.429,0,-226.791	0/1:33:18,15:18:644:15:540:-39.0025,0,-48.3566	0/0:144:144,0:144:5106:0:0:0,-43.3483,-459.688	0/0:41:41,0:41:1427:0:0:0,-12.3422,-128.72	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:149:88,61:88:3122:61:2188:-152.332,0,-236.354	0/1:198:92,106:92:3266:106:3769:-279.807,0,-234.557	0/0:70:70,0:70:2464:0:0:0,-21.0721,-222.013	0/0:130:129,1:129:4589:1:25:0,-36.634,-410.676	0/0:155:154,1:154:5499:1:36:0,-43.0614,-491.439	.:.:.:.:.:.:.:.	0/1:119:64,55:64:2283:55:1980:-142.652,0,-169.909	0/1:128:52,76:52:1847:76:2712:-205.792,0,-127.978	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:171:83,88:83:2968:88:3129:-230.36,0,-215.877	0/0:34:34,0:34:1202:0:0:0,-10.235,-108.484	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.451	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/1:204:104,99:104:3728:99:3533:-256.709,0,-274.252	0/0:176:175,1:175:6192:1:36:0,-49.383,-553.699	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/0:159:159,0:159:5654:0:0:0,-47.8638,-508.983	0/0:228:228,0:228:8106:0:0:0,-68.6348,-729.561	0/0:28:27,1:27:968:1:32:0,-5.22953,-84.181	0/0:58:58,0:58:2047:0:0:0,-17.4597,-184.502	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/1:24:14,10:14:504:10:345:-24.1561,0,-38.4734	0/0:187:187,0:187:6665:0:0:0,-56.2926,-599.929	0/1:80:40,40:40:1424:40:1440:-105.815,0,-104.375	0/0:81:81,0:81:2844:0:0:0,-24.3834,-256.199	0/0:169:169,0:169:5990:0:0:0,-50.8741,-539.212	0/0:77:77,0:77:2740:0:0:0,-23.1793,-246.844	0/0:120:120,0:120:4272:0:0:0,-36.1236,-384.658	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:101:101,0:101:3595:0:0:0,-30.404,-323.758	0/1:162:81,81:81:2860:81:2886:-211.207,0,-208.871	0/0:200:199,1:199:7097:1:36:0,-56.6077,-635.193	0/0:54:54,0:54:1920:0:0:0,-16.2556,-173.077	0/0:79:79,0:79:2797:0:0:0,-23.7814,-251.97	0/0:41:41,0:41:1440:0:0:0,-12.3422,-129.893	0/0:105:105,0:105:3721:0:0:0,-31.6081,-335.092	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:57:24,33:24:856:33:1177:-89.078,0,-60.2024	0/0:62:62,0:62:2188:0:0:0,-18.6639,-197.184	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9907	0/1:66:36,30:36:1279:30:1080:-77.6453,0,-95.5445	0/1:78:26,52:26:908:52:1860:-144.199,0,-58.5549	0/0:177:177,0:177:6284:0:0:0,-53.2823,-565.658	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268
chr08	31377590	.	G	T	214701	PASS	AB=0.454237;ABP=51.3053;AC=158;AF=0.840426;AN=188;AO=7832;CIGAR=1X;DP=9316;DPB=9316;DPRA=15.5569;EPP=16966.6;EPPR=3214.62;GTI=0;LEN=1;MEANALT=1.05435;MQM=59.9709;MQMR=60;NS=94;NUMALT=1;ODDS=4.03289;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275442;QR=52718;RO=1479;RPL=4542;RPP=437.611;RPPR=120.597;RPR=3290;RUN=1;SAF=4547;SAP=444.581;SAR=3285;SRF=881;SRP=120.597;SRR=598;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,56:0:0:56:1943:-175.144,-16.8577,0	1/1:124:0,124:0:0:124:4390:-395.277,-37.3277,0	0/1:161:88,73:88:3138:73:2543:-180.658,0,-234.179	1/1:166:0,166:0:0:166:5814:-523.381,-49.971,0	1/1:50:0,50:0:0:50:1741:-156.972,-15.0515,0	1/1:54:0,54:0:0:54:1916:-172.716,-16.2556,0	1/1:105:0,105:0:0:105:3672:-330.531,-31.6082,0	1/1:140:0,140:0:0:140:4976:-447.993,-42.1442,0	1/1:118:1,116:1:36:116:4017:-358.128,-31.9821,0	1/1:124:0,124:0:0:124:4370:-393.473,-37.3277,0	1/1:87:0,87:0:0:87:3092:-278.51,-26.1896,0	1/1:123:0,123:0:0:123:4230:-380.887,-37.0267,0	1/1:110:0,110:0:0:110:3903:-351.466,-33.1133,0	1/1:110:0,110:0:0:110:3850:-346.701,-33.1133,0	1/1:106:0,106:0:0:106:3674:-330.872,-31.9092,0	1/1:101:0,101:0:0:101:3571:-321.598,-30.404,0	1/1:84:0,84:0:0:84:2987:-269.063,-25.2865,0	1/1:83:0,83:0:0:83:2959:-266.544,-24.9855,0	1/1:54:0,54:0:0:54:1898:-171.097,-16.2556,0	1/1:107:0,107:0:0:107:3721:-334.966,-32.2102,0	1/1:137:1,136:1:36:136:4774:-426.223,-37.6428,0	0/1:36:25,11:25:887:11:377:-23.4217,0,-69.311	1/1:75:0,75:0:0:75:2649:-238.657,-22.5773,0	0/1:101:32,69:32:1152:69:2442:-189.26,0,-73.5861	1/1:55:0,55:0:0:55:1927:-173.706,-16.5567,0	0/1:227:123,104:123:4381:104:3687:-263.702,0,-326.127	1/1:179:0,179:0:0:179:6225:-560.359,-53.8844,0	0/1:46:26,20:26:932:20:690:-48.5719,0,-70.3515	1/1:148:0,148:0:0:148:5272:-474.619,-44.5524,0	1/1:120:7,113:7:252:113:3980:-335.357,-13.0946,0	0/1:141:66,75:66:2337:75:2656:-196.843,0,-168.143	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:254:0,254:0:0:254:8930:-803.7,-76.4616,0	0/1:113:57,56:57:2040:56:1961:-142.745,0,-149.856	0/1:81:36,45:36:1296:45:1577:-117.836,0,-92.5605	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:150:94,56:94:3344:56:1936:-129.345,0,-256.022	0/1:52:29,23:29:1027:23:796:-56.3014,0,-77.0886	1/1:126:0,126:0:0:126:4428:-398.653,-37.9298,0	1/1:92:0,92:0:0:92:3239:-291.734,-27.6948,0	1/1:81:0,81:0:0:81:2814:-253.501,-24.3834,0	1/1:110:0,110:0:0:110:3769:-339.414,-33.1133,0	0/1:141:77,64:77:2756:64:2272:-162.298,0,-205.837	0/1:165:88,77:88:3139:77:2719:-195.285,0,-233.066	1/1:110:0,110:0:0:110:3838:-345.583,-33.1133,0	1/1:122:2,120:2:68:120:4247:-375.953,-30.268,0	1/1:98:0,98:0:0:98:3453:-310.986,-29.5009,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:131:74,57:74:2664:57:1988:-139.76,0,-200.57	0/1:80:46,34:46:1626:34:1175:-81.9704,0,-122.545	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:147:72,75:72:2584:75:2615:-191.35,0,-188.557	1/1:68:0,68:0:0:68:2418:-217.876,-20.47,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:14:0,14:0:0:14:492:-44.6123,-4.21442,0	1/1:79:0,79:0:0:79:2758:-248.462,-23.7814,0	1/1:125:0,125:0:0:125:4358:-392.404,-37.6288,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:184:100,84:100:3557:84:2975:-212.595,0,-264.949	1/1:148:3,145:3:108:145:5083:-447.546,-34.4773,0	1/1:83:0,83:0:0:83:2944:-265.196,-24.9855,0	1/1:102:0,102:0:0:102:3592:-323.445,-30.7051,0	1/1:159:2,157:2:72:157:5577:-495.22,-41.027,0	1/1:112:1,111:1:36:111:3940:-351.197,-30.1171,0	1/1:43:0,43:0:0:43:1515:-136.642,-12.9443,0	1/1:92:0,92:0:0:92:3236:-291.466,-27.6948,0	1/1:109:0,108:0:0:108:3831:-344.628,-32.5112,0	0/1:18:14,4:14:487:4:144:-7.89508,0,-38.7407	1/1:57:0,57:0:0:57:1987:-179.104,-17.1587,0	0/1:151:88,63:88:3160:63:2209:-153.619,0,-239.169	1/1:171:0,171:0:0:171:6040:-543.707,-51.4761,0	1/1:146:0,146:0:0:146:5160:-464.549,-43.9504,0	1/1:93:0,93:0:0:93:3292:-296.499,-27.9958,0	1/1:107:0,106:0:0:106:3736:-336.084,-31.9092,0	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	1/1:109:0,109:0:0:109:3864:-347.958,-32.8123,0	0/1:123:71,52:71:2531:52:1848:-129.573,0,-191.014	1/1:186:0,186:0:0:186:6565:-590.941,-55.9916,0	1/1:191:0,190:0:0:190:6657:-598.862,-57.1957,0	1/1:106:0,106:0:0:106:3759:-338.512,-31.9092,0	1/1:110:0,109:0:0:109:3844:-345.8,-32.8123,0	1/1:160:0,160:0:0:160:5650:-508.629,-48.1648,0	1/1:55:0,55:0:0:55:1955:-176.155,-16.5567,0	0/1:109:65,44:65:2288:44:1538:-105.898,0,-173.368	1/1:92:0,92:0:0:92:3208:-288.946,-27.6948,0	0/1:61:31,30:31:1098:30:1022:-73.9239,0,-80.7658	0/1:109:60,49:60:2122:49:1740:-124.072,0,-158.435	0/1:105:74,31:74:2628:31:1086:-66.4394,0,-205.158	1/1:101:0,101:0:0:101:3569:-321.42,-30.404,0	1/1:188:0,188:0:0:188:6615:-595.441,-56.5936,0
chr08	31415147	.	C	T	335596	PASS	AB=0.505263;ABP=3.83317;AC=161;AF=0.856383;AN=188;AO=11954;CIGAR=1X;DP=13687;DPB=13687;DPRA=0;EPP=25917.4;EPPR=3740.13;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9792;MQMR=59.9925;NS=94;NUMALT=1;ODDS=3.33086;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=426312;QR=61532;RO=1729;RPL=6434;RPP=154.762;RPPR=84.676;RPR=5520;RUN=1;SAF=6439;SAP=158.101;SAR=5515;SRF=994;SRP=87.2582;SRR=735;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:96:0,96:0:0:96:3407:-306.846,-28.8989,0	1/1:150:1,149:1:32:149:5319:-475.646,-41.9552,0	0/1:150:61,89:61:2160:89:3168:-240.183,0,-149.51	1/1:228:0,228:0:0:228:8044:-723.978,-68.6348,0	1/1:91:2,89:2:72:89:3192:-280.666,-20.557,0	1/1:45:0,45:0:0:45:1597:-144.019,-13.5464,0	1/1:134:1,132:1:36:132:4706:-420.102,-36.7985,0	1/1:165:0,165:0:0:165:5876:-528.951,-49.67,0	1/1:223:0,223:0:0:223:7952:-715.703,-67.1297,0	1/1:135:0,135:0:0:135:4761:-428.646,-40.6391,0	1/1:155:0,155:0:0:155:5552:-499.802,-46.6597,0	1/1:234:0,234:0:0:234:8304:-747.373,-70.441,0	1/1:238:0,238:0:0:238:8496:-764.64,-71.6451,0	1/1:255:0,255:0:0:255:9033:-811.766,-76.7627,0	1/1:162:0,162:0:0:162:5760:-518.515,-48.7669,0	1/1:208:0,208:0:0:208:7428:-668.563,-62.6142,0	1/1:103:1,102:1:36:102:3656:-325.645,-27.4078,0	1/1:115:1,114:1:36:114:4056:-361.628,-31.0202,0	1/1:89:0,89:0:0:89:3178:-286.243,-26.7917,0	1/1:246:0,246:0:0:246:8797:-791.718,-74.0534,0	1/1:200:0,200:0:0:200:7152:-643.735,-60.206,0	0/1:55:38,17:38:1364:17:612:-38.8568,0,-106.504	1/1:184:0,184:0:0:184:6559:-590.393,-55.3895,0	0/1:158:64,94:64:2268:94:3376:-256.492,0,-156.818	1/1:90:1,89:1:36:89:3204:-284.983,-23.4944,0	0/1:272:118,154:118:4232:154:5520:-415.044,0,-299.179	1/1:203:0,203:0:0:203:7236:-651.296,-61.1091,0	0/1:73:37,36:37:1319:36:1260:-91.7247,0,-97.036	1/1:264:0,264:0:0:264:9454:-850.816,-79.4719,0	1/1:168:12,156:12:432:156:5590:-463.999,-11.3518,0	0/1:143:66,76:66:2349:76:2716:-201.577,0,-168.562	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:9:4,5:4:140:5:176:-13.4757,0,-10.2353	1/1:16:0,16:0:0:16:564:-51.0778,-4.81648,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:369:0,369:0:0:369:13234:-1190.86,-111.08,0	0/1:77:29,48:29:1019:48:1724:-132.266,0,-68.842	0/1:123:69,53:69:2459:53:1872:-131.512,0,-184.479	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:191:98,93:98:3472:93:3320:-241.522,0,-255.195	0/1:96:41,55:41:1459:55:1964:-148.136,0,-102.706	1/1:209:0,209:0:0:209:7431:-668.837,-62.9153,0	1/1:149:0,149:0:0:149:5297:-476.865,-44.8535,0	1/1:143:0,143:0:0:143:5115:-460.49,-43.0473,0	1/1:138:1,137:1:36:137:4885:-436.204,-37.9439,0	0/1:158:79,79:79:2796:79:2829:-207.284,0,-204.317	0/1:232:113,119:113:4033:119:4264:-314.099,0,-293.318	1/1:124:0,124:0:0:124:4398:-395.993,-37.3277,0	1/1:193:4,189:4:144:189:6731:-592.553,-44.7852,0	1/1:178:0,178:0:0:178:6367:-573.12,-53.5833,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	0/1:116:55,61:55:1960:61:2173:-160.915,0,-141.756	0/1:98:51,47:51:1824:47:1676:-121.626,0,-134.94	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:192:75,117:75:2661:117:4197:-320.112,0,-181.938	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:173:1,172:1:36:172:6118:-547.122,-48.4799,0	1/1:225:2,223:2:72:223:7884:-702.747,-60.895,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	0/1:186:96,90:96:3420:90:3219:-233.94,0,-252.021	1/1:235:3,232:3:108:232:8267:-733.919,-60.6669,0	1/1:96:0,96:0:0:96:3410:-307.114,-28.8989,0	1/1:123:0,122:0:0:122:4373:-393.526,-36.7257,0	1/1:206:1,205:1:36:205:7322:-655.43,-58.4139,0	1/1:123:0,123:0:0:123:4400:-396.173,-37.0267,0	1/1:134:1,133:1:32:133:4722:-421.941,-37.1387,0	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	1/1:123:0,123:0:0:123:4376:-394.014,-37.0267,0	0/1:46:21,25:21:756:25:900:-67.4736,0,-54.5198	1/1:117:0,117:0:0:117:4184:-376.742,-35.2205,0	0/1:164:77,87:77:2747:87:3127:-232.278,0,-198.075	1/1:314:1,313:1:36:313:11152:-999.966,-90.9251,0	1/1:167:0,167:0:0:167:5983:-538.574,-50.272,0	1/1:150:0,150:0:0:150:5315:-478.486,-45.1545,0	1/1:156:1,155:1:36:155:5529:-494.138,-43.3624,0	0/1:31:14,17:14:491:17:600:-44.9973,0,-35.1892	1/1:163:0,163:0:0:163:5852:-526.79,-49.0679,0	0/1:130:69,61:69:2472:61:2166:-156.072,0,-183.6	1/1:397:0,397:0:0:397:14138:-1272.18,-119.509,0	1/1:118:0,118:0:0:118:4188:-377.103,-35.5215,0	1/1:255:0,255:0:0:255:9113:-820.145,-76.7627,0	1/1:142:1,141:1:36:141:4989:-445.52,-39.148,0	1/1:292:3,289:3:108:289:10326:-918.632,-77.8256,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:149:75,74:75:2679:74:2639:-192.903,0,-196.501	1/1:173:0,173:0:0:173:6169:-555.309,-52.0782,0	0/1:158:81,77:81:2859:77:2764:-201.438,0,-209.984	0/1:206:122,84:122:4303:84:2971:-205.61,0,-325.433	0/1:184:128,56:128:4570:56:2016:-126.323,0,-356.076	1/1:159:1,158:1:36:158:5633:-503.492,-44.2655,0	1/1:266:0,266:0:0:266:9494:-854.418,-80.074,0
chr08	31415193	.	C	T	11669.8	PASS	AB=0.473338;ABP=12.3895;AC=27;AF=0.143617;AN=188;AO=736;CIGAR=1X;DP=6212;DPB=6212;DPRA=1.00747;EPP=1601.21;EPPR=11889.7;GTI=1;LEN=1;MEANALT=1.05556;MQM=59.9443;MQMR=59.977;NS=94;NUMALT=1;ODDS=1.35835;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26368;QR=195629;RO=5474;RPL=736;RPP=1601.21;RPPR=11889.7;RPR=0;RUN=1;SAF=0;SAP=1601.21;SAR=736;SRF=0;SRP=11889.7;SRR=5474;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:97:96,1:96:3417:1:36:0,-25.6016,-304.146	0/1:80:48,32:48:1690:32:1148:-79.5474,0,-128.294	0/0:109:109,0:109:3858:0:0:0,-32.8123,-347.393	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.984	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/0:96:96,0:96:3399:0:0:0,-28.8989,-306.122	0/0:64:64,0:64:2276:0:0:0,-19.2659,-205.074	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/0:105:105,0:105:3741:0:0:0,-31.6081,-336.89	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.39	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/0:99:99,0:99:3539:0:0:0,-29.802,-318.719	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:135:135,0:135:4844:0:0:0,-40.639,-436.113	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.633	0/1:15:5,10:5:180:10:341:-26.5019,0,-12.0366	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:81:44,37:44:1572:37:1328:-95.4388,0,-117.388	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/1:92:56,36:56:2004:36:1292:-88.889,0,-152.939	0/0:127:127,0:127:4556:0:0:0,-38.2308,-410.205	0/1:42:21,21:21:741:21:718:-52.2908,0,-54.3683	0/0:127:127,0:127:4511:0:0:0,-38.2308,-406.156	0/0:107:103,4:103:3685:4:144:0,-18.8966,-318.537	0/1:63:31,32:31:1104:32:1152:-85.0146,0,-80.7057	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:165:165,0:165:5905:0:0:0,-49.6699,-531.558	0/1:44:30,14:30:1080:14:504:-32.4528,0,-84.2679	0/1:58:23,35:23:824:35:1260:-96.2457,0,-57.0236	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:72:44,28:44:1572:28:1008:-69.3622,0,-120.097	0/1:41:26,15:26:936:15:540:-36.5943,0,-72.2172	0/0:94:94,0:94:3334:0:0:0,-28.2968,-300.276	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.278	0/0:74:73,1:73:2586:1:36:0,-18.6779,-229.388	0/1:89:52,37:52:1857:37:1301:-90.5976,0,-140.616	0/1:124:64,59:64:2304:59:2116:-153.322,0,-170.234	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:94:91,3:91:3276:3:108:0,-18.2216,-284.983	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:63:34,29:34:1216:29:1044:-75.3099,0,-90.7817	0/1:36:20,16:20:686:16:576:-41.3379,0,-51.2187	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:68:42,26:42:1508:26:936:-64.0894,0,-115.545	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:60:59,1:59:2112:1:36:0,-14.4635,-186.751	0/0:100:98,1:98:3489:1:36:0,-26.5635,-310.616	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/1:76:38,38:38:1360:38:1360:-99.8223,0,-99.8223	0/0:122:120,2:120:4281:2:72:0,-29.8889,-378.612	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.144	0/0:99:99,0:99:3529:0:0:0,-29.802,-317.819	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:48:48,0:48:1670:0:0:0,-14.4494,-150.583	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:75:53,22:53:1904:22:788:-48.6391,0,-149.06	0/0:121:121,0:121:4313:0:0:0,-36.4246,-388.345	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:86:85,1:85:3044:1:36:0,-22.2903,-270.591	0/1:16:9,7:9:309:7:252:-18.2125,0,-23.3242	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.864	0/1:44:22,22:22:784:22:792:-58.3604,0,-57.6386	0/0:172:172,0:172:6144:0:0:0,-51.7772,-553.061	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.899	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.091	0/0:131:128,3:128:4584:3:108:0,-29.3598,-402.65	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:80:35,45:35:1245:45:1616:-121.648,0,-88.2703	0/0:91:91,0:91:3276:0:0:0,-27.3937,-295.059	0/1:57:28,29:28:1004:29:1044:-77.1161,0,-73.5172	0/1:82:32,50:32:1144:50:1800:-137.598,0,-78.5851	0/1:90:22,68:22:788:68:2444:-193.036,0,-44.1521	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:122:122,0:122:4361:0:0:0,-36.7257,-392.663
chr08	31545341	.	T	A	88897.4	PASS	AB=0.336248;ABP=535.672;AC=154;AF=0.827957;AN=186;AO=4588;CIGAR=1X;DP=6128;DPB=6128;DPRA=13.4462;EPP=9965.73;EPPR=3334.05;GTI=8;LEN=1;MEANALT=1.04396;MQM=39.1986;MQMR=47.0078;NS=93;NUMALT=1;ODDS=0.138369;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164127;QR=54958;RO=1534;RPL=0;RPP=9965.73;RPPR=3334.05;RPR=4588;RUN=1;SAF=4588;SAP=9965.73;SAR=0;SRF=1534;SRP=3334.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:356:-30.7133,-3.0103,0	1/1:104:0,104:0:0:104:3706:-317.314,-31.3071,0	0/1:94:46,48:46:1648:48:1720:-115.985,0,-119.899	1/1:135:0,135:0:0:135:4837:-408.521,-40.6391,0	1/1:44:0,44:0:0:44:1565:-129.091,-13.2453,0	1/1:36:0,36:0:0:36:1269:-107.653,-10.8371,0	1/1:56:0,56:0:0:56:2010:-167.319,-16.8577,0	1/1:106:0,106:0:0:106:3785:-321.809,-31.9092,0	1/1:49:0,49:0:0:49:1760:-147.997,-14.7505,0	1/1:52:0,52:0:0:52:1868:-159.104,-15.6536,0	1/1:21:0,21:0:0:21:756:-62.9134,-6.32163,0	1/1:22:0,22:0:0:22:792:-66.9532,-6.62266,0	1/1:38:0,38:0:0:38:1368:-112.498,-11.4391,0	1/1:24:0,24:0:0:24:864:-73.0087,-7.22472,0	1/1:35:0,35:0:0:35:1260:-102.287,-10.5361,0	1/1:27:0,27:0:0:27:972:-81.8695,-8.12781,0	1/1:27:0,27:0:0:27:972:-82.5737,-8.12781,0	1/1:31:0,31:0:0:31:1112:-91.876,-9.33193,0	1/1:10:0,10:0:0:10:360:-30.1859,-3.0103,0	1/1:99:0,98:0:0:98:3483:-292.145,-29.5009,0	1/1:123:0,123:0:0:123:4412:-371.194,-37.0267,0	0/1:126:108,18:108:3861:18:640:-17.6372,0,-301.071	1/1:56:0,56:0:0:56:2004:-171.024,-16.8577,0	0/1:97:60,37:60:2156:37:1313:-82.9833,0,-162.242	1/1:37:0,37:0:0:37:1332:-112.243,-11.1381,0	0/1:241:153,88:153:5474:88:3160:-197.596,0,-408.67	1/1:126:0,126:0:0:126:4517:-382.955,-37.9298,0	0/1:31:24,7:24:860:7:252:-12.4169,0,-65.6921	1/1:146:1,142:1:36:142:5080:-428.541,-39.8079,0	1/1:96:3,93:3:104:93:3319:-276.952,-19.2617,0	0/1:106:68,38:68:2448:38:1360:-80.1015,0,-179.56	0/1:5:2,3:2:72:3:108:-7.86629,0,-5.2607	1/1:7:0,7:0:0:7:252:-21.6047,-2.10721,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.37144	1/1:3:0,3:0:0:3:108:-8.18644,-0.90309,0	0/1:12:9,3:9:324:3:93:-4.39144,0,-25.1532	1/1:69:0,69:0:0:69:2476:-202.253,-20.7711,0	0/1:248:163,85:163:5844:85:3003:-173.792,0,-432.293	0/1:31:24,7:24:864:7:252:-11.9302,0,-63.1945	.:.:.:.:.:.:.:.	0/1:132:91,41:91:3276:41:1476:-82.6004,0,-248.974	0/1:22:17,5:17:612:5:180:-9.12591,0,-45.5603	1/1:83:0,83:0:0:83:2972:-251.586,-24.9855,0	1/1:31:0,31:0:0:31:1116:-91.3672,-9.33193,0	1/1:24:0,24:0:0:24:849:-71.4066,-7.22472,0	1/1:43:0,43:0:0:43:1544:-132.331,-12.9443,0	0/1:69:31,38:31:1112:38:1330:-91.1939,0,-79.4017	0/1:148:101,47:101:3609:47:1692:-100.468,0,-270.394	1/1:93:0,93:0:0:93:3306:-277.194,-27.9958,0	1/1:82:0,82:0:0:82:2952:-252.212,-24.6845,0	1/1:123:1,122:1:36:122:4365:-372.456,-33.4335,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.4762	0/1:173:125,47:125:4481:47:1684:-85.4132,0,-336.437	0/1:39:25,14:25:896:14:496:-31.2683,0,-67.4956	0/1:10:2,8:2:72:8:288:-22.9393,0,-3.76062	0/1:132:107,25:107:3824:25:900:-36.9522,0,-296.298	1/1:37:0,37:0:0:37:1328:-111.177,-11.1381,0	1/1:1:0,1:0:0:1:36:-2.82108,-0.30103,0	1/1:7:0,7:0:0:7:252:-21.569,-2.10721,0	1/1:37:0,37:0:0:37:1328:-112.201,-11.1381,0	1/1:72:0,72:0:0:72:2592:-213.303,-21.6742,0	1/1:2:0,2:0:0:2:72:-6.05649,-0.60206,0	0/1:156:71,85:71:2547:85:3018:-211.584,0,-182.016	1/1:145:1,144:1:36:144:5114:-427.613,-40.4617,0	1/1:41:0,41:0:0:41:1464:-126.046,-12.3422,0	1/1:40:0,40:0:0:40:1436:-121.589,-12.0412,0	1/1:121:0,121:0:0:121:4344:-359.486,-36.4246,0	1/1:73:1,72:1:36:72:2569:-211.41,-18.3769,0	0/1:8:1,7:1:36:7:252:-19.0161,0,-0.837919	1/1:46:0,46:0:0:46:1637:-141.214,-13.8474,0	1/1:54:0,54:0:0:54:1944:-158.457,-16.2556,0	0/1:19:11,8:11:396:8:288:-19.5794,0,-30.1893	1/1:67:0,66:0:0:66:2368:-200.879,-19.868,0	0/1:62:41,21:41:1472:21:756:-47.6838,0,-111.573	1/1:76:0,76:0:0:76:2732:-229.71,-22.8783,0	1/1:99:0,99:0:0:99:3564:-299.989,-29.802,0	1/1:74:0,74:0:0:74:2637:-225.099,-22.2762,0	1/1:94:0,94:0:0:94:3353:-282.172,-28.2968,0	0/1:12:3,9:3:108:9:324:-23.9943,0,-6.44366	1/1:77:0,77:0:0:77:2764:-235.541,-23.1793,0	0/1:131:106,25:106:3775:25:900:-37.2082,0,-287.07	1/1:163:0,163:0:0:163:5833:-491.552,-49.0679,0	1/1:71:0,71:0:0:71:2525:-208.401,-21.3731,0	1/1:24:0,24:0:0:24:864:-71.6644,-7.22472,0	1/1:60:0,60:0:0:60:2150:-177.59,-18.0618,0	1/1:63:0,63:0:0:63:2251:-187.433,-18.9649,0	1/1:27:0,27:0:0:27:964:-78.8445,-8.12781,0	0/1:63:44,19:44:1567:19:684:-36.2096,0,-116.617	1/1:32:0,32:0:0:32:1148:-95.3239,-9.63296,0	0/1:18:13,5:13:468:5:176:-9.56193,0,-35.0766	0/1:48:29,19:29:1036:19:680:-42.3298,0,-74.8482	0/1:54:42,12:42:1512:12:428:-20.0877,0,-115.505	1/1:105:0,105:0:0:105:3745:-312.91,-31.6082,0	1/1:55:0,55:0:0:55:1961:-161.389,-16.5567,0
chr08	31545356	.	T	C	13516.9	PASS	AB=0.371295;ABP=279.695;AC=26;AF=0.139785;AN=186;AO=721;CIGAR=1X;DP=6083;DPB=6083;DPRA=1.29662;EPP=8.07305;EPPR=48.7303;GTI=4;LEN=1;MEANALT=1;MQM=39.9168;MQMR=41.343;NS=93;NUMALT=1;ODDS=0.0851973;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25824;QR=192208;RO=5362;RPL=381;RPP=8.07305;RPPR=48.7303;RPR=340;RUN=1;SAF=721;SAP=1568.64;SAR=0;SRF=5362;SRP=11646.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:396:0:0:0,-3.31133,-34.1108	0/0:102:102,0:102:3664:0:0:0,-30.7051,-313.572	0/0:95:95,0:95:3385:0:0:0,-28.5978,-294.985	0/0:134:134,0:134:4778:0:0:0,-40.338,-403.799	0/0:45:45,0:45:1612:0:0:0,-13.5463,-132.449	0/0:35:35,0:35:1260:0:0:0,-10.536,-106.636	0/0:56:56,0:56:2003:0:0:0,-16.8577,-166.788	0/0:107:107,0:107:3831:0:0:0,-32.2102,-325.211	0/0:48:48,0:48:1720:0:0:0,-14.4494,-144.845	0/0:52:52,0:52:1857:0:0:0,-15.6536,-158.285	0/0:21:21,0:21:756:0:0:0,-6.32163,-62.9134	0/0:22:22,0:22:777:0:0:0,-6.62266,-65.7498	0/0:40:40,0:40:1416:0:0:0,-12.0412,-116.784	0/0:24:24,0:24:860:0:0:0,-7.22472,-72.8075	0/0:35:35,0:35:1260:0:0:0,-10.536,-102.287	0/0:26:26,0:26:936:0:0:0,-7.82678,-78.788	0/0:27:27,0:27:968:0:0:0,-8.12781,-82.3727	0/0:31:31,0:31:1116:0:0:0,-9.33193,-92.077	0/0:10:10,0:10:360:0:0:0,-3.0103,-30.1859	0/0:95:95,0:95:3408:0:0:0,-28.5978,-286.043	0/0:123:123,0:123:4396:0:0:0,-37.0267,-369.634	0/1:127:62,65:62:2209:65:2340:-163.867,0,-158.111	0/0:56:56,0:56:1993:0:0:0,-16.8577,-170.537	0/1:98:86,12:86:3096:12:432:-6.98075,0,-242.443	0/0:36:36,0:36:1296:0:0:0,-10.8371,-109.322	0/1:238:154,84:154:5517:84:3008:-188.611,0,-408.906	0/0:127:127,0:127:4555:0:0:0,-38.2308,-385.623	0/1:31:21,10:21:756:10:360:-21.4999,0,-56.9571	0/0:140:140,0:140:5036:0:0:0,-42.1442,-427.34	0/0:95:93,2:93:3329:2:68:0,-22.2069,-280.415	0/1:102:77,25:77:2743:25:900:-43.4738,0,-204.256	0/1:5:4,1:4:144:1:36:-2.04337,0,-11.088	0/0:7:7,0:7:252:0:0:0,-2.10721,-21.6047	1/1:3:0,3:0:0:3:108:-9.37144,-0.90309,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.18644	0/1:12:9,3:9:324:3:108:-5.75908,0,-24.8777	0/0:69:69,0:69:2484:0:0:0,-20.7711,-202.654	0/1:248:148,100:148:5286:100:3584:-229.681,0,-375.62	0/1:30:14,16:14:504:16:576:-37.805,0,-34.8425	.:.:.:.:.:.:.:.	0/1:132:85,47:85:3056:47:1688:-106.729,0,-224.161	0/1:21:10,11:10:360:11:396:-26.4829,0,-25.7231	0/0:84:84,0:84:3020:0:0:0,-25.2865,-255.507	0/0:30:30,0:30:1076:0:0:0,-9.0309,-88.1048	0/0:25:25,0:25:896:0:0:0,-7.52575,-75.2172	0/0:42:42,0:42:1508:0:0:0,-12.6433,-129.25	0/0:72:72,0:72:2588:0:0:0,-21.6742,-224.312	0/1:147:93,54:93:3321:54:1932:-121.3,0,-246.275	0/0:90:90,0:90:3225:0:0:0,-27.0927,-269.325	0/0:83:83,0:83:2988:0:0:0,-24.9855,-255.081	0/0:123:123,0:123:4420:0:0:0,-37.0267,-380.626	0/1:7:4,3:4:144:3:108:-7.4918,0,-11.1191	0/1:168:100,68:100:3588:68:2432:-155.582,0,-257.531	0/1:39:27,12:27:972:12:432:-25.7845,0,-73.9837	0/1:10:9,1:9:324:1:36:-0.538215,0,-26.1604	0/1:130:79,51:79:2840:51:1813:-117.105,0,-211.25	0/0:37:37,0:37:1332:0:0:0,-11.1381,-111.51	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.82108	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.0392	0/0:37:37,0:37:1328:0:0:0,-11.1381,-112.242	0/0:71:71,0:71:2548:0:0:0,-21.3731,-209.981	0/0:2:2,0:2:68:0:0:0,-0.60206,-5.86652	0/0:157:157,0:157:5590:0:0:0,-47.2617,-489.653	0/0:140:139,1:139:4981:1:36:0,-38.9566,-415.69	0/0:40:40,0:40:1436:0:0:0,-12.0412,-123.519	0/0:40:40,0:40:1440:0:0:0,-12.0412,-121.923	0/0:119:119,0:119:4268:0:0:0,-35.8226,-353.069	0/0:73:73,0:73:2613:0:0:0,-21.9752,-218.919	0/1:8:7,1:7:252:1:36:-0.837919,0,-19.0161	0/0:46:46,0:46:1656:0:0:0,-13.8474,-142.404	0/0:54:54,0:54:1940:0:0:0,-16.2556,-158.43	0/0:19:18,1:18:648:1:36:0,-2.17105,-54.1138	0/0:67:67,0:67:2408:0:0:0,-20.169,-204.77	0/1:60:43,17:43:1548:17:608:-34.6412,0,-119.396	0/0:77:77,0:77:2760:0:0:0,-23.1793,-232.283	0/0:100:100,0:100:3600:0:0:0,-30.103,-303.183	0/0:71:71,0:71:2522:0:0:0,-21.3731,-215.843	0/0:94:94,0:94:3372:0:0:0,-28.2968,-283.189	0/0:12:12,0:12:428:0:0:0,-3.61236,-36.9733	0/0:76:76,0:76:2728:0:0:0,-22.8783,-233.491	0/1:129:62,67:62:2224:67:2404:-165.746,0,-156.632	0/0:163:163,0:163:5851:0:0:0,-49.0679,-492.807	0/0:68:68,0:68:2436:0:0:0,-20.47,-201.474	0/0:24:24,0:24:864:0:0:0,-7.22472,-71.6644	0/0:60:60,0:60:2152:0:0:0,-18.0618,-177.614	0/0:64:64,0:64:2304:0:0:0,-19.2659,-191.644	0/0:27:27,0:27:957:0:0:0,-8.12781,-78.1246	0/1:62:42,20:42:1512:20:707:-41.1952,0,-110.832	0/0:31:31,0:31:1116:0:0:0,-9.33193,-92.6734	0/1:18:9,9:9:320:9:324:-22.17,0,-22.4763	0/1:47:30,17:30:1080:17:600:-36.363,0,-78.41	0/1:54:34,20:34:1220:20:716:-44.4628,0,-90.8831	0/0:106:106,0:106:3793:0:0:0,-31.9092,-316.177	0/0:54:54,0:54:1944:0:0:0,-16.2556,-159.848
chr08	31626008	.	A	T	40428.5	PASS	AB=0.56273;ABP=105.173;AC=162;AF=0.861702;AN=188;AO=11083;CIGAR=1X;DP=12483;DPB=12483;DPRA=0;EPP=24060.8;EPPR=3017.01;GTI=10;LEN=1;MEANALT=1.07447;MQM=15.1687;MQMR=56.9683;NS=94;NUMALT=1;ODDS=1.22978;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=391741;QR=48779;RO=1388;RPL=11083;RPP=24069.4;RPPR=3017.01;RPR=0;RUN=1;SAF=11082;SAP=24060.8;SAR=1;SRF=1388;SRP=3017.01;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1761:-77.5722,-15.0515,0	1/1:108:0,108:0:0:108:3815:-166.021,-32.5112,0	1/1:55:0,55:0:0:55:1929:-83.9465,-16.5567,0	1/1:247:2,245:2:64:245:8693:-317.556,-71.7069,0	1/1:76:3,73:3:108:73:2604:-93.905,-18.6876,0	1/1:54:0,54:0:0:54:1923:-84.0093,-16.2556,0	1/1:306:0,306:0:0:306:10745:-386.279,-92.1152,0	1/1:205:0,204:0:0:204:7241:-317.315,-61.4101,0	1/1:117:3,114:3:108:114:4017:-168.697,-28.2428,0	1/1:174:3,171:3:108:171:6070:-216.669,-48.4666,0	1/1:71:0,71:0:0:71:2472:-89.41,-21.3731,0	1/1:141:3,138:3:100:138:4833:-210.964,-37.7149,0	1/1:119:2,117:2:68:117:4109:-174.816,-32.6102,0	1/1:143:2,141:2:68:141:4916:-192.189,-40.2083,0	1/1:113:2,111:2:72:111:3943:-137.556,-31.0789,0	1/1:95:1,94:1:36:94:3300:-128.723,-26.9032,0	1/1:90:1,89:1:36:89:3104:-139.253,-25.2994,0	1/1:86:1,85:1:21:85:2996:-135.044,-23.867,0	1/1:48:0,48:0:0:48:1700:-74.429,-14.4494,0	1/1:290:2,288:2:72:288:10221:-363.591,-84.6437,0	1/1:203:1,202:1:32:202:7168:-273.209,-59.6174,0	0/1:176:86,90:86:3027:90:3198:-59.819,0,-215.94	1/1:130:0,130:0:0:130:4611:-166.371,-39.1339,0	0/1:187:53,134:53:1874:134:4765:-125.395,0,-112.635	1/1:143:0,143:0:0:143:5066:-194.039,-43.0473,0	0/1:357:143,214:143:5032:214:7616:-166.262,0,-345.438	1/1:268:1,267:1:36:267:9437:-363.055,-79.0803,0	0/1:45:20,25:20:707:25:892:-21.4728,0,-50.4082	1/1:347:0,345:0:0:345:12220:-435.467,-103.855,0	1/1:185:6,179:6:216:179:6336:-224.453,-35.9,0	0/1:152:76,76:76:2715:76:2711:-54.9882,0,-198.771	0/1:11:7,4:7:252:4:144:-2.22636,0,-19.7176	1/1:29:0,29:0:0:29:1025:-38.9465,-8.72987,0	0/1:3:1,2:1:36:2:72:-2.31679,0,-2.69518	1/1:10:0,10:0:0:10:360:-15.2414,-3.0103,0	1/1:4:0,4:0:0:4:144:-6.2703,-1.20412,0	1/1:652:3,648:3:108:648:22580:-828.325,-192.474,0	0/1:264:111,153:111:3825:153:5395:-127.671,0,-262.195	0/1:73:19,54:19:665:54:1916:-62.6115,0,-38.1795	1/1:5:0,5:0:0:5:180:-6.79334,-1.50515,0	0/1:148:58,90:58:2052:90:3173:-79.391,0,-140.379	0/1:50:26,24:26:928:24:835:-17.3812,0,-66.8872	1/1:162:1,161:1:36:161:5709:-219.393,-47.2702,0	1/1:100:3,97:3:108:97:3406:-119.157,-26.1903,0	1/1:90:1,89:1:32:89:3138:-117.365,-25.9959,0	1/1:147:0,147:0:0:147:5224:-187.214,-44.2514,0	1/1:78:0,78:0:0:78:2746:-121.998,-23.4803,0	0/1:238:94,144:94:3314:144:5067:-115.617,0,-226.608	1/1:196:0,194:0:0:194:6893:-247.511,-58.3998,0	1/1:172:1,171:1:36:171:6104:-214.355,-50.3798,0	1/1:219:1,218:1:21:218:7739:-278.588,-64.6017,0	0/1:13:6,7:6:197:7:252:-5.02982,0,-14.1379	0/1:124:66,58:66:2359:58:2061:-52.6828,0,-174.852	0/1:97:62,35:62:2190:35:1248:-15.1142,0,-168.145	0/1:26:8,18:8:288:18:644:-19.4306,0,-17.3858	0/1:129:59,70:59:2048:70:2508:-56.0217,0,-143.712	1/1:103:0,103:0:0:103:3611:-131.863,-31.0061,0	1/1:7:0,7:0:0:7:252:-8.94321,-2.10721,0	1/1:38:0,38:0:0:38:1364:-47.746,-11.4391,0	1/1:112:0,112:0:0:112:3979:-154.555,-33.7154,0	1/1:184:1,182:1:36:182:6419:-235.58,-53.8309,0	1/1:13:0,13:0:0:13:464:-16.5756,-3.91339,0	0/1:221:94,127:94:3242:127:4455:-93.0727,0,-224.689	1/1:257:0,257:0:0:257:9148:-325.362,-77.3647,0	1/1:77:0,77:0:0:77:2733:-105.607,-23.1793,0	1/1:88:0,88:0:0:88:3089:-115.402,-26.4906,0	1/1:236:3,233:3:104:233:8266:-290.703,-63.0258,0	1/1:128:4,124:4:140:124:4432:-152.297,-33.2733,0	1/1:35:0,35:0:0:35:1236:-50.9683,-10.5361,0	1/1:150:0,150:0:0:150:5318:-232.616,-45.1545,0	1/1:156:9,144:9:311:144:5087:-169.18,-35.0224,0	0/1:27:12,15:12:432:15:540:-10.7864,0,-31.0934	1/1:176:2,174:2:57:174:6151:-266.102,-49.8923,0	0/1:69:33,36:33:1169:36:1292:-34.7054,0,-84.738	1/1:241:0,239:0:0:239:8441:-327.859,-71.9462,0	1/1:124:0,124:0:0:124:4429:-158.769,-37.3277,0	1/1:114:1,113:1:36:113:3983:-171.521,-32.6227,0	1/1:109:0,109:0:0:109:3872:-167.947,-32.8123,0	0/1:25:12,13:12:432:13:468:-11.8421,0,-31.66	1/1:144:1,143:1:32:143:5076:-193.843,-40.149,0	0/1:129:45,84:45:1551:84:2964:-87.5234,0,-101.042	1/1:263:4,259:4:144:259:9208:-318.806,-65.8573,0	1/1:153:3,150:3:108:150:5281:-190.118,-42.2377,0	1/1:90:3,87:3:104:87:3050:-106.75,-21.2262,0	1/1:118:1,117:1:36:117:4135:-148.791,-34.1242,0	1/1:232:3,229:3:104:229:8069:-282.575,-64.1518,0	1/1:48:1,47:1:36:47:1666:-71.2824,-12.7548,0	0/1:174:57,117:57:1994:117:4058:-127.863,0,-125.761	1/1:126:2,124:2:72:124:4351:-186.895,-34.7099,0	0/1:37:20,17:20:716:17:608:-12.3543,0,-46.0216	0/1:102:57,45:57:2025:45:1599:-33.3024,0,-151.021	0/1:112:82,30:82:2903:30:1068:-4.14276,0,-225.844	1/1:106:0,106:0:0:106:3732:-134.91,-31.9092,0	1/1:138:0,138:0:0:138:4872:-179.802,-41.5421,0
chr08	31661109	.	GTT	CTG,GTG	164008	PASS	AB=0.515121,0.478327;ABP=6.95047,11.1052;AC=158,28;AF=0.849462,0.150538;AN=186;AO=6530,961;CIGAR=1X1M1X,2M1X;DP=7525;DPB=7525;DPRA=0,0.934541;EPP=13975,2029.44;EPPR=11.6962;GTI=1;LEN=3,1;MEANALT=1.68817,2.36111;MQM=59.5821,59.9428;MQMR=60;NS=93;NUMALT=2;ODDS=0.835748;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=229224,33783;QR=111;RO=4;RPL=24,7;RPP=13975,2029.44;RPPR=11.6962;RPR=6506,954;RUN=1,1;SAF=0,0;SAP=14182.7,2089.8;SAR=6530,961;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39,0:0:0:39,0:1300,0:-117.289,-11.7402,0,-117.289,-11.7402,-117.289	1/1:60:0,59,1:0:0:59,1:2055,36:-184.86,-17.7608,0,-181.922,-14.4635,-181.621	1/2:132:0,69,63:0:0:69,63:2440,2217:-379.558,-180.829,-160.058,-199.082,0,-180.117	1/1:203:0,203,0:0:0:203,0:7057,0:-634.72,-61.1091,0,-634.72,-61.1091,-634.72	1/1:51:0,51,0:0:0:51,0:1803,0:-162.309,-15.3525,0,-162.309,-15.3525,-162.309	1/1:38:0,38,0:0:0:38,0:1335,0:-119.821,-11.4391,0,-119.821,-11.4391,-119.821	1/1:115:0,114,0:0:0:114,0:4001,0:-359.85,-34.3174,0,-359.85,-34.3174,-359.85	1/1:95:0,95,0:0:0:95,0:3305,0:-297.523,-28.5979,0,-297.523,-28.5979,-297.523	1/1:81:0,79,1:0:0:79,1:2743,27:-246.84,-23.7814,0,-244.712,-21.6526,-244.411	1/1:65:0,65,0:0:0:65,0:2289,0:-206.174,-19.567,0,-206.174,-19.567,-206.174	1/1:61:0,61,0:0:0:61,0:2163,0:-194.881,-18.3628,0,-194.881,-18.3628,-194.881	1/1:126:0,126,0:0:0:126,0:4429,0:-398.674,-37.9298,0,-398.674,-37.9298,-398.674	1/1:86:0,85,0:0:0:85,0:2975,0:-267.503,-25.5876,0,-267.503,-25.5876,-267.503	1/1:64:0,64,0:0:0:64,0:2261,0:-203.611,-19.2659,0,-203.611,-19.2659,-203.611	1/1:80:0,80,0:0:0:80,0:2824,0:-254.23,-24.0824,0,-254.23,-24.0824,-254.23	1/1:74:0,73,0:0:0:73,0:2557,0:-229.875,-21.9752,0,-229.875,-21.9752,-229.875	1/1:53:0,53,0:0:0:53,0:1902,0:-171.458,-15.9546,0,-171.458,-15.9546,-171.458	1/1:45:0,45,0:0:0:45,0:1584,0:-142.793,-13.5464,0,-142.793,-13.5464,-142.793	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7548,-9.0309,0,-96.7548,-9.0309,-96.7548	1/1:161:0,161,0:0:0:161,0:5669,0:-510.221,-48.4658,0,-510.221,-48.4658,-510.221	1/1:131:0,127,3:0:0:127,3:4464,99:-401.39,-38.2308,0,-393.387,-30.2497,-392.484	1/2:99:0,22,76:0:0:22,76:778,2670:-280.508,-217.309,-210.686,-63.1915,0,-40.3132	1/1:139:0,138,0:0:0:138,0:4877,0:-438.697,-41.5421,0,-438.697,-41.5421,-438.697	1/2:73:0,35,38:0:0:35,38:1224,1338:-208.731,-109.279,-98.7433,-99.8026,0,-88.3634	1/1:59:0,59,0:0:0:59,0:2071,0:-186.568,-17.7608,0,-186.568,-17.7608,-186.568	1/2:157:0,105,52:0:0:105,52:3663,1856:-449.557,-151.666,-120.058,-298.245,0,-282.591	1/1:138:0,137,0:0:0:137,0:4751,0:-427.53,-41.2411,0,-427.53,-41.2411,-427.53	1/2:40:0,20,19:0:0:20,19:718,680:-113.974,-55.4499,-49.4293,-58.523,0,-52.8034	1/1:184:0,183,0:0:0:183,0:6368,0:-572.837,-55.0885,0,-572.837,-55.0885,-572.837	1/1:101:0,99,2:0:0:99,2:3471,72:-312.069,-29.802,0,-306.194,-23.5673,-305.592	1/2:108:0,59,49:0:0:59,49:2081,1720:-309.725,-140.335,-122.574,-169.742,0,-154.991	1/2:9:0,3,6:0:0:3,6:106,216:-26.5782,-17.9843,-17.0812,-8.9484,0,-7.14222	1/2:11:0,10,1:0:0:10,1:351,36:-31.8546,-3.29724,-0.286945,-28.9164,0,-28.6153	1/2:3:0,1,2:0:0:1,2:36,68:-8.79971,-5.85565,-5.55462,-3.29724,0,-2.69518	.:.:.:.:.:.:.:.	1/2:15:0,5,10:0:0:5,10:176,356:-43.6978,-29.3709,-27.8658,-14.6801,0,-11.6698	1/1:220:0,220,0:0:0:220,0:7756,0:-697.958,-66.2266,0,-697.958,-66.2266,-697.958	1/2:85:0,42,43:0:0:42,43:1462,1498:-240.178,-122.166,-109.522,-118.359,0,-105.415	1/2:54:0,38,16:0:0:38,16:1325,572:-154.746,-46.9969,-35.5578,-108.104,0,-103.287	1/1:2:0,2,0:0:0:2,0:68,0:-6.45793,-0.60206,0,-6.45793,-0.60206,-6.45793	1/2:146:0,68,78:0:0:68,78:2365,2703:-412.317,-220.027,-199.557,-192.637,0,-169.157	1/2:47:0,29,18:0:0:29,18:1023,644:-136.111,-52.8721,-44.1422,-83.5948,0,-78.1762	1/1:117:0,117,0:0:0:117,0:4108,0:-369.742,-35.2205,0,-369.742,-35.2205,-369.742	1/1:71:0,71,0:0:0:71,0:2510,0:-226.095,-21.3731,0,-226.095,-21.3731,-226.095	1/1:69:0,69,0:0:0:69,0:2437,0:-219.388,-20.7711,0,-219.388,-20.7711,-219.388	1/1:77:0,77,0:0:0:77,0:2668,0:-240.305,-23.1793,0,-240.305,-23.1793,-240.305	1/2:85:0,53,32:0:0:53,32:1859,1139:-244.296,-93.1854,-77.2308,-151.464,0,-141.831	1/2:91:0,47,42:0:0:47,42:1637,1479:-253.455,-120.401,-106.253,-133.045,0,-120.402	1/1:93:0,93,0:0:0:93,0:3280,0:-295.365,-27.9958,0,-295.365,-27.9958,-295.365	1/1:85:0,85,0:0:0:85,0:2968,0:-267.27,-25.5876,0,-267.27,-25.5876,-267.27	1/1:113:0,112,0:0:0:112,0:3945,0:-354.831,-33.7154,0,-354.831,-33.7154,-354.831	1/1:2:0,2,0:0:0:2,0:70,0:-6.64733,-0.60206,0,-6.64733,-0.60206,-6.64733	1/2:90:1,47,42:1:34:47,42:1656,1461:-250.512,-116.041,-104.65,-132.024,0,-122.138	1/2:57:0,32,25:0:0:32,25:1125,887:-164.194,-72.6224,-62.9894,-91.9244,0,-84.3987	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/2:90:0,35,55:0:0:35,55:1218,1913:-254.812,-155.777,-145.241,-99.3827,0,-82.8261	1/1:55:0,54,0:0:0:54,0:1888,0:-169.778,-16.2556,0,-169.778,-16.2556,-169.778	1/1:4:0,4,0:0:0:4,0:141,0:-13.007,-1.20412,0,-13.007,-1.20412,-13.007	1/1:11:0,11,0:0:0:11,0:384,0:-34.894,-3.31133,0,-34.894,-3.31133,-34.894	1/1:65:0,65,0:0:0:65,0:2305,0:-207.504,-19.567,0,-207.504,-19.567,-207.504	1/1:100:0,99,1:0:0:99,1:3502,36:-314.86,-29.802,0,-311.923,-26.5047,-311.622	1/1:11:0,11,0:0:0:11,0:380,0:-34.5318,-3.31133,0,-34.5318,-3.31133,-34.5318	1/2:112:1,59,51:1:28:59,51:2069,1803:-312.784,-144.718,-129.174,-166.238,0,-153.103	1/1:117:0,115,1:0:0:115,1:4031,36:-362.449,-34.6185,0,-359.511,-31.6711,-359.21	1/1:43:0,42,1:0:0:42,1:1497,36:-134.636,-12.6433,0,-131.699,-9.34602,-131.398	1/1:80:0,80,0:0:0:80,0:2782,0:-250.507,-24.0824,0,-250.507,-24.0824,-250.507	1/1:176:0,174,2:0:0:174,2:6048,68:-543.863,-52.3792,0,-538.347,-46.5236,-537.745	1/1:94:0,94,0:0:0:94,0:3316,0:-298.604,-28.2968,0,-298.604,-28.2968,-298.604	1/1:42:0,42,0:0:0:42,0:1488,0:-133.663,-12.6433,0,-133.663,-12.6433,-133.663	1/1:67:0,64,0:0:0:64,0:2273,0:-204.414,-19.2659,0,-204.414,-19.2659,-204.414	1/1:40:0,40,0:0:0:40,0:1405,0:-126.629,-12.0412,0,-126.629,-12.0412,-126.629	1/2:11:0,3,8:0:0:3,8:98,284:-31.4015,-23.4951,-22.592,-8.24069,0,-5.83245	1/1:82:0,82,0:0:0:82,0:2891,0:-260.396,-24.6845,0,-260.396,-24.6845,-260.396	1/2:45:0,27,17:0:0:27,17:933,595:-124.147,-48.3999,-40.2721,-75.7363,0,-70.6187	1/1:119:0,119,0:0:0:119,0:4115,0:-370.417,-35.8226,0,-370.417,-35.8226,-370.417	1/1:138:0,138,0:0:0:138,0:4849,0:-436.266,-41.5421,0,-436.266,-41.5421,-436.266	1/1:52:0,51,0:0:0:51,0:1774,0:-159.487,-15.3525,0,-159.487,-15.3525,-159.487	1/1:100:0,99,0:0:0:99,0:3513,0:-316.029,-29.802,0,-316.029,-29.802,-316.029	1/2:9:0,4,5:0:0:4,5:142,176:-26.2514,-14.6799,-13.4757,-11.9251,0,-10.4199	1/1:70:0,70,0:0:0:70,0:2482,0:-223.634,-21.0721,0,-223.634,-21.0721,-223.634	1/2:108:1,49,57:1:28:49,57:1682,1999:-296.731,-160.525,-147.992,-134.354,0,-119.412	1/1:203:0,202,0:0:0:202,0:7080,0:-636.851,-60.8081,0,-636.851,-60.8081,-636.851	1/1:70:1,69,0:1:21:69,0:2446,0:-218.231,-18.9722,0,-218.532,-20.7711,-220.119	1/1:93:0,92,0:0:0:92,0:3271,0:-293.973,-27.6948,0,-293.973,-27.6948,-293.973	1/1:59:0,57,0:0:0:57,0:2032,0:-182.733,-17.1587,0,-182.733,-17.1587,-182.733	1/1:148:0,148,0:0:0:148,0:5223,0:-470.008,-44.5524,0,-470.008,-44.5524,-470.008	1/1:26:0,26,0:0:0:26,0:907,0:-81.9419,-7.82678,0,-81.9419,-7.82678,-81.9419	1/2:64:0,40,24:0:0:40,24:1409,839:-183.307,-68.6025,-56.5613,-115.055,0,-107.83	1/1:100:0,100,0:0:0:100,0:3534,0:-318.207,-30.103,0,-318.207,-30.103,-318.207	1/2:60:0,29,29:0:0:29,29:1040,997:-165.849,-81.0141,-72.2842,-84.8903,0,-76.1605	1/2:101:0,61,39:0:0:61,39:2120,1375:-284.307,-111.954,-93.5913,-172.35,0,-160.61	1/2:82:0,30,52:0:0:30,52:1052,1852:-236.913,-151.306,-142.275,-85.9591,0,-70.3055	1/1:101:0,101,0:0:0:101,0:3526,0:-317.516,-30.404,0,-317.516,-30.404,-317.516	1/1:143:0,143,0:0:0:143,0:5075,0:-456.865,-43.0473,0,-456.865,-43.0473,-456.865
chr08	31737513	.	ATTT	CTTT,CTTG	120870	PASS	AB=0.641092,0.356307;ABP=135.978,140.926;AC=170,16;AF=0.913978,0.0860215;AN=186;AO=5137,278;CIGAR=1X3M,1X2M1X;DP=5426;DPB=5426;DPRA=0,0.933341;EPP=11157.9,606.68;EPPR=7.35324;GTI=1;LEN=1,4;MEANALT=1.29032,2.11111;MQM=50.0152,41.6367;MQMR=45;NS=93;NUMALT=2;ODDS=1.33261;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=183228,9792;QR=64;RO=2;RPL=0,0;RPP=11157.9,606.68;RPPR=7.35324;RPR=5137,278;RUN=1,1;SAF=0,0;SAP=11157.9,606.68;SAR=5137,278;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28,0:0:0:28,0:990,0:-89.0159,-8.42884,0,-89.0159,-8.42884,-89.0159	1/1:61:0,61,0:0:0:61,0:2150,0:-193.302,-18.3628,0,-193.302,-18.3628,-193.302	1/1:210:0,210,0:0:0:210,0:7536,0:-676.319,-63.2163,0,-676.319,-63.2163,-676.319	1/1:135:0,135,0:0:0:135,0:4834,0:-432.789,-40.6391,0,-432.789,-40.6391,-432.789	1/1:31:0,31,0:0:0:31,0:1101,0:-99.0442,-9.33193,0,-99.0442,-9.33193,-99.0442	1/1:26:0,26,0:0:0:26,0:927,0:-83.5419,-7.82678,0,-83.5419,-7.82678,-83.5419	1/1:95:0,95,0:0:0:95,0:3397,0:-304.151,-28.5979,0,-304.151,-28.5979,-304.151	1/1:56:0,56,0:0:0:56,0:1985,0:-177.829,-16.8577,0,-177.829,-16.8577,-177.829	1/1:76:0,76,0:0:0:76,0:2728,0:-244.887,-22.8783,0,-244.887,-22.8783,-244.887	1/1:49:0,49,0:0:0:49,0:1756,0:-157.233,-14.7505,0,-157.233,-14.7505,-157.233	1/1:38:0,36,0:0:0:36,0:1279,0:-114.62,-10.8371,0,-114.62,-10.8371,-114.62	1/1:64:0,64,0:0:0:64,0:2300,0:-206.017,-19.2659,0,-206.017,-19.2659,-206.017	1/1:74:0,74,0:0:0:74,0:2660,0:-238.81,-22.2762,0,-238.81,-22.2762,-238.81	1/1:33:0,33,0:0:0:33,0:1176,0:-105.799,-9.93399,0,-105.799,-9.93399,-105.799	1/1:71:0,71,0:0:0:71,0:2541,0:-226.61,-21.3731,0,-226.61,-21.3731,-226.61	1/1:43:0,43,0:0:0:43,0:1548,0:-138.729,-12.9443,0,-138.729,-12.9443,-138.729	1/1:26:0,26,0:0:0:26,0:936,0:-84.0846,-7.82678,0,-84.0846,-7.82678,-84.0846	1/1:29:0,29,0:0:0:29,0:1044,0:-94.0101,-8.72987,0,-94.0101,-8.72987,-94.0101	1/1:21:0,21,0:0:0:21,0:756,0:-67.7411,-6.32163,0,-67.7411,-6.32163,-67.7411	1/1:72:0,72,0:0:0:72,0:2557,0:-228.481,-21.6742,0,-228.481,-21.6742,-228.481	1/1:174:0,174,0:0:0:174,0:6142,0:-549.378,-52.3792,0,-549.378,-52.3792,-549.378	1/2:45:0,16,29:0:0:16,29:572,1015:-126.626,-80.2515,-75.435,-46.7246,0,-37.9947	1/1:59:0,59,0:0:0:59,0:2108,0:-188.589,-17.7608,0,-188.589,-17.7608,-188.589	1/2:11:0,10,1:0:0:10,1:360,36:-32.4965,-3.21998,-0.209678,-29.6292,0,-29.3282	1/1:50:0,50,0:0:0:50,0:1773,0:-158.589,-15.0515,0,-158.589,-15.0515,-158.589	1/2:73:0,57,15:0:0:57,15:2021,522:-203.409,-41.2214,-24.0627,-162.293,0,-157.778	1/1:166:0,166,0:0:0:166,0:5935,0:-531.416,-49.971,0,-531.416,-49.971,-531.416	1/2:24:0,15,9:0:0:15,9:536,323:-69.6062,-26.0857,-21.5702,-43.8734,0,-41.1642	1/1:159:1,158,0:1:28:158,0:5676,0:-504.871,-45.2759,0,-505.172,-47.5627,-507.199	1/1:73:0,72,1:0:0:72,1:2572,36:-230.477,-21.6742,0,-227.61,-18.4542,-227.308	1/2:63:0,46,17:0:0:46,17:1637,610:-180.646,-48.6761,-34.8287,-132.32,0,-127.203	1/1:2:0,2,0:0:0:2,0:72,0:-6.81432,-0.60206,0,-6.81432,-0.60206,-6.81432	1/1:5:0,5,0:0:0:5,0:176,0:-16.1373,-1.50515,0,-16.1373,-1.50515,-16.1373	.:.:.:.:.:.:.:.	1/1:16:0,16,0:0:0:16,0:576,0:-51.8611,-4.81648,0,-51.8611,-4.81648,-51.8611	1/1:6:0,6,0:0:0:6,0:216,0:-19.7408,-1.80618,0,-19.7408,-1.80618,-19.7408	1/1:213:0,212,0:0:0:212,0:7555,0:-674.063,-63.8184,0,-674.063,-63.8184,-674.063	1/2:35:0,26,9:0:0:26,9:928,322:-101.106,-26.0083,-18.1815,-75.4493,0,-72.7401	1/1:23:0,23,0:0:0:23,0:824,0:-74.3,-6.92369,0,-74.3,-6.92369,-74.3	1/1:4:0,4,0:0:0:4,0:144,0:-13.2725,-1.20412,0,-13.2725,-1.20412,-13.2725	1/2:64:0,45,19:0:0:45,19:1605,674:-184.151,-54.012,-40.4656,-130.488,0,-124.769	1/2:26:0,20,6:0:0:20,6:720,214:-75.7596,-17.2435,-11.2229,-58.8653,0,-57.0592	1/1:87:0,87,0:0:0:87,0:3074,0:-275.641,-26.1896,0,-275.641,-26.1896,-275.641	1/1:43:0,43,0:0:0:43,0:1543,0:-137.384,-12.9443,0,-137.384,-12.9443,-137.384	1/1:62:0,62,0:0:0:62,0:2224,0:-199.542,-18.6639,0,-199.542,-18.6639,-199.542	1/1:60:0,60,0:0:0:60,0:2160,0:-193.359,-18.0618,0,-193.359,-18.0618,-193.359	1/1:52:0,52,0:0:0:52,0:1868,0:-167.798,-15.6536,0,-167.798,-15.6536,-167.798	1/2:55:0,37,17:0:0:37,17:1295,597:-151.429,-47.3319,-36.1937,-104.131,0,-99.0138	1/1:61:0,61,0:0:0:61,0:2158,0:-193.278,-18.3628,0,-193.278,-18.3628,-193.278	1/1:58:0,58,0:0:0:58,0:2088,0:-186.972,-17.4597,0,-186.972,-17.4597,-186.972	1/1:48:0,48,0:0:0:48,0:1719,0:-153.72,-14.4494,0,-153.72,-14.4494,-153.72	1/1:3:0,3,0:0:0:3,0:108,0:-10.0325,-0.90309,0,-10.0325,-0.90309,-10.0325	1/1:29:0,29,0:0:0:29,0:1024,0:-91.255,-8.72987,0,-91.255,-8.72987,-91.255	1/2:15:0,10,5:0:0:10,5:356,180:-43.3655,-14.506,-11.4957,-29.2095,0,-27.7043	1/1:4:0,4,0:0:0:4,0:140,0:-12.9161,-1.20412,0,-12.9161,-1.20412,-12.9161	1/2:76:0,50,26:0:0:50,26:1784,903:-216.805,-71.8652,-56.8137,-145.285,0,-137.458	1/1:25:0,25,0:0:0:25,0:861,0:-77.4975,-7.52575,0,-77.4975,-7.52575,-77.4975	1/1:5:0,5,0:0:0:5,0:180,0:-16.3721,-1.50515,0,-16.3721,-1.50515,-16.3721	1/1:13:0,13,0:0:0:13,0:449,0:-40.535,-3.91339,0,-40.535,-3.91339,-40.535	1/1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chr08	31742286	.	TGA	TGG,CGG	110165	PASS	AB=0.681307,0.314607;ABP=282.54,295.281;AC=163,25;AF=0.867021,0.132979;AN=188;AO=4613,314;CIGAR=2M1X,1X1M1X;DP=4943;DPB=4943.33;DPRA=0,0.968104;EPP=10002.6,684.853;EPPR=7.35324;GTI=6;LEN=1,3;MEANALT=1.45745,2.10345;MQM=59.9686,59.6911;MQMR=60;NS=94;NUMALT=2;ODDS=1.9032;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=164687,11052;QR=72;RO=2;RPL=2,0;RPP=10002.6,684.853;RPPR=7.35324;RPR=4611,314;RUN=1,1;SAF=4613,314;SAP=10020,684.853;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,61,0:0:0:61,0:2164,0:-194.815,-18.3628,0,-194.815,-18.3628,-194.815	1/1:52:0,52,0:0:0:52,0:1864,0:-168.039,-15.6536,0,-168.039,-15.6536,-168.039	1/1:92:0,92,0:0:0:92,0:3270,0:-294.52,-27.6948,0,-294.52,-27.6948,-294.52	1/1:189:0,189,0:0:0:189,0:6768,0:-609.191,-56.8947,0,-609.191,-56.8947,-609.191	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/1:48:0,48,0:0:0:48,0:1689,0:-152.292,-14.4494,0,-152.292,-14.4494,-152.292	1/1:40:0,40,0:0:0:40,0:1440,0:-129.898,-12.0412,0,-129.898,-12.0412,-129.898	1/1:90:0,89,0:0:0:89,0:3181,0:-285.702,-26.7917,0,-285.702,-26.7917,-285.702	1/1:50:0,50,0:0:0:50,0:1784,0:-160.843,-15.0515,0,-160.843,-15.0515,-160.843	1/1:26:0,25,0:0:0:25,0:900,0:-80.9612,-7.52575,0,-80.9612,-7.52575,-80.9612	1/1:24:0,24,0:0:0:24,0:852,0:-77.0004,-7.22472,0,-77.0004,-7.22472,-77.0004	1/1:50:0,50,0:0:0:50,0:1783,0:-160.752,-15.0515,0,-160.752,-15.0515,-160.752	1/1:34:0,34,0:0:0:34,0:1216,0:-109.747,-10.235,0,-109.747,-10.235,-109.747	1/1:31:0,31,0:0:0:31,0:1104,0:-99.6706,-9.33193,0,-99.6706,-9.33193,-99.6706	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/1:33:0,33,0:0:0:33,0:1180,0:-106.508,-9.93399,0,-106.508,-9.93399,-106.508	1/1:15:0,15,0:0:0:15,0:513,0:-46.4852,-4.51545,0,-46.4852,-4.51545,-46.4852	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:126:0,126,0:0:0:126,0:4476,0:-403.008,-37.9298,0,-403.008,-37.9298,-403.008	1/1:78:0,78,0:0:0:78,0:2773,0:-249.81,-23.4803,0,-249.81,-23.4803,-249.81	1/2:40:0,23,17:0:0:23,17:820,597:-115.786,-48.9402,-42.0165,-67.1988,0,-62.0813	1/1:89:0,89,0:0:0:89,0:3154,0:-284.084,-26.7917,0,-284.084,-26.7917,-284.084	1/2:24:0,20,4:0:0:20,4:716,134:-69.5944,-11.1859,-5.16533,-58.7471,0,-57.543	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/2:116:0,88,28:0:0:88,28:3105,987:-333.547,-80.7138,-54.2232,-253.185,0,-244.757	1/1:161:0,160,0:0:0:160,0:5752,0:-517.56,-48.1648,0,-517.56,-48.1648,-517.56	1/2:9:0,5,4:0:0:5,4:180,144:-26.7966,-12.1095,-10.6043,-15.0469,0,-13.8428	1/1:146:0,145,0:0:0:145,0:5208,0:-468.497,-43.6494,0,-468.497,-43.6494,-468.497	1/1:136:0,133,2:0:0:133,2:4706,72:-423.34,-40.037,0,-417.465,-34.1622,-416.863	1/2:78:2,57,19:2:72:57,19:2048,662:-214.428,-47.9486,-36.6658,-161.198,0,-161.353	1/2:6:0,4,2:0:0:4,2:144,70:-17.8016,-6.04527,-4.84115,-12.1095,0,-11.5074	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:10:0,8,2:0:0:8,2:288,72:-29.734,-6.23466,-3.82642,-23.8592,0,-23.2571	1/1:82:0,82,0:0:0:82,0:2948,0:-265.553,-24.6845,0,-265.553,-24.6845,-265.553	1/2:65:0,49,16:0:0:49,16:1760,565:-189.943,-46.3636,-31.6131,-143.933,0,-139.117	1/2:26:0,16,10:0:0:16,10:576,346:-75.4695,-28.4622,-23.6457,-47.3585,0,-44.3482	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:82:0,59,23:0:0:59,23:2107,808:-237.77,-65.9843,-48.2235,-172.138,0,-165.214	1/2:12:0,9,3:0:0:9,3:324,108:-35.6088,-9.17208,-6.46281,-26.7966,0,-25.8935	1/1:59:0,59,0:0:0:59,0:2100,0:-189.269,-17.7608,0,-189.269,-17.7608,-189.269	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:146:0,145,1:0:0:145,1:5200,28:-467.857,-43.6494,0,-465.639,-41.1507,-465.338	1/1:48:0,47,0:0:0:47,0:1653,0:-148.693,-14.1484,0,-148.693,-14.1484,-148.693	1/2:44:0,36,8:0:0:36,8:1265,284:-126.454,-23.4951,-12.658,-103.313,0,-100.905	1/1:85:0,85,0:0:0:85,0:3048,0:-274.549,-25.5876,0,-274.549,-25.5876,-274.549	1/1:33:0,33,0:0:0:33,0:1176,0:-106.148,-9.93399,0,-106.148,-9.93399,-106.148	1/1:119:0,119,0:0:0:119,0:4248,0:-382.499,-35.8226,0,-382.499,-35.8226,-382.499	1/2:10:0,5,5:0:0:5,5:180,172:-29.0073,-14.3123,-12.8071,-15.0469,0,-13.5418	1/2:101:0,82,19:0:0:82,19:2940,681:-295.691,-55.9,-31.2155,-240.149,0,-234.43	1/2:44:0,31,12:0:0:31,12:1116,432:-126.309,-35.249,-25.9171,-91.0599,0,-87.4476	1/2:8:0,7,1:0:0:7,1:248,36:-23.4951,-3.29724,-1.19003,-20.557,0,-20.256	1/2:68:0,41,27:0:0:41,27:1446,941:-193.912,-76.1701,-63.8278,-118.09,0,-109.963	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:14:0,14,0:0:0:14,0:487,0:-44.1592,-4.21442,0,-44.1592,-4.21442,-44.1592	1/1:50:0,50,0:0:0:50,0:1784,0:-160.825,-15.0515,0,-160.825,-15.0515,-160.825	1/1:64:0,64,0:0:0:64,0:2292,0:-206.455,-19.2659,0,-206.455,-19.2659,-206.455	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:51:0,21,29:0:0:21,29:741,1029:-144.169,-83.8327,-77.5111,-60.3305,0,-51.6006	1/1:70:0,68,2:0:0:68,2:2418,72:-217.515,-20.47,0,-211.64,-14.2354,-211.038	1/1:29:0,29,0:0:0:29,0:1032,0:-93.1935,-8.72987,0,-93.1935,-8.72987,-93.1935	1/1:49:0,48,0:0:0:48,0:1724,0:-155.164,-14.4494,0,-155.164,-14.4494,-155.164	1/1:122:0,122,0:0:0:122,0:4364,0:-392.921,-36.7257,0,-392.921,-36.7257,-392.921	1/1:160:0,159,1:0:0:159,1:5681,36:-510.981,-47.8638,0,-508.043,-44.5665,-507.742	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/2:3:0,2,1:0:0:2,1:63,36:-8.33349,-3.29724,-2.69518,-5.38109,0,-5.08006	1/1:119:0,119,0:0:0:119,0:4252,0:-382.86,-35.8226,0,-382.86,-35.8226,-382.86	1/2:36:0,20,16:0:0:20,16:720,560:-104.595,-45.8408,-39.8202,-59.1082,0,-54.2917	1/1:133:0,132,0:0:0:132,0:4714,0:-424.209,-39.736,0,-424.209,-39.736,-424.209	1/1:95:0,94,0:0:0:94,0:3346,0:-300.995,-28.2968,0,-300.995,-28.2968,-300.995	1/1:45:0,45,0:0:0:45,0:1616,0:-145.73,-13.5464,0,-145.73,-13.5464,-145.73	1/1:70:0,70,0:0:0:70,0:2489,0:-224.262,-21.0721,0,-224.262,-21.0721,-224.262	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:76:0,75,0:0:0:75,0:2677,0:-240.922,-22.5773,0,-240.922,-22.5773,-240.922	1/2:37:0,27,10:0:0:27,10:964,355:-107.874,-29.2801,-21.1523,-78.949,0,-75.9387	1/1:122:0,122,0:0:0:122,0:4368,0:-393.291,-36.7257,0,-393.291,-36.7257,-393.291	1/1:55:0,54,0:0:0:54,0:1932,0:-173.885,-16.2556,0,-173.885,-16.2556,-173.885	1/1:20:0,20,0:0:0:20,0:711,0:-64.3156,-6.0206,0,-64.3156,-6.0206,-64.3156	1/1:19:0,19,0:0:0:19,0:676,0:-61.168,-5.71957,0,-61.168,-5.71957,-61.168	1/1:46:0,46,0:0:0:46,0:1640,0:-147.889,-13.8474,0,-147.889,-13.8474,-147.889	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:28:0,18,10:0:0:18,10:644,352:-81.5255,-29.0073,-23.5888,-52.8721,0,-49.8618	1/1:37:0,37,0:0:0:37,0:1324,0:-119.462,-11.1381,0,-119.462,-11.1381,-119.462	1/2:14:0,6,8:0:0:6,8:212,280:-40.3974,-23.1305,-21.3243,-17.6186,0,-15.2104	1/2:39:0,24,15:0:0:24,15:860,535:-114.109,-43.9691,-36.7444,-70.4971,0,-65.9817	1/2:28:0,9,19:0:0:9,19:324,658:-80.2633,-53.8222,-51.1129,-26.7966,0,-21.077	1/1:74:0,74,0:0:0:74,0:2635,0:-237.396,-22.2762,0,-237.396,-22.2762,-237.396	1/1:34:0,34,0:0:0:34,0:1216,0:-109.747,-10.235,0,-109.747,-10.235,-109.747
chr08	31742612	.	C	T	27882.1	PASS	AB=0.558989;ABP=89.0884;AC=25;AF=0.132979;AN=188;AO=1608;CIGAR=1X;DP=9833;DPB=9833;DPRA=1.33243;EPP=3494.74;EPPR=17856.9;GTI=2;LEN=1;MEANALT=1.02857;MQM=59.5473;MQMR=59.6261;NS=94;NUMALT=1;ODDS=0.0675605;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57645;QR=293848;RO=8222;RPL=1608;RPP=3494.74;RPPR=17856.9;RPR=0;RUN=1;SAF=0;SAP=3494.74;SAR=1608;SRF=0;SRP=17856.9;SRR=8222;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.323	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.43	0/0:115:115,0:115:4109:0:0:0,-34.6184,-369.87	0/0:138:137,1:137:4873:1:36:0,-37.9439,-435.057	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.023	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.146	0/0:184:184,0:184:6589:0:0:0,-55.3895,-592.912	0/0:133:133,0:133:4721:0:0:0,-40.037,-424.985	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.375	0/0:116:115,0:115:4108:0:0:0,-34.6184,-369.424	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.03	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.921	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.612	0/0:107:107,0:107:3811:0:0:0,-32.2102,-343.093	0/0:93:93,0:93:3331:0:0:0,-27.9958,-299.966	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.005	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.371	0/0:79:79,0:79:2831:0:0:0,-23.7814,-254.979	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.646	0/0:182:182,0:182:6540:0:0:0,-54.7875,-588.629	0/0:161:161,0:161:5738:0:0:0,-48.4658,-515.252	0/1:106:16,90:16:572:90:3240:-259.908,0,-19.9024	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.154	0/1:126:64,62:64:2292:62:2222:-162.254,0,-168.602	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.31	0/1:344:164,180:164:5856:180:6452:-476.986,0,-423.532	0/0:168:168,0:168:5994:0:0:0,-50.573,-539.349	0/1:62:32,30:32:1148:30:1080:-78.8448,0,-84.966	0/0:191:191,0:191:6825:0:0:0,-57.4967,-614.306	0/0:109:105,3:105:3733:3:108:0,-22.7955,-325.546	0/1:133:46,87:46:1636:87:3097:-238.825,0,-107.489	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3082	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0893	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/0:261:260,1:260:9286:1:36:0,-74.9716,-832.067	0/1:112:70,42:70:2508:42:1508:-102.295,0,-192.235	0/1:143:90,53:90:3219:53:1908:-128.92,0,-246.844	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1358	0/1:130:48,82:48:1709:82:2940:-225.57,0,-114.951	0/1:86:45,41:45:1607:41:1472:-106.874,0,-119.031	0/0:112:112,0:112:3997:0:0:0,-33.7154,-359.901	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.671	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.878	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.899	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.711	0/1:184:78,106:78:2787:106:3800:-286.602,0,-195.668	0/0:97:97,0:97:3445:0:0:0,-29.1999,-310.249	0/0:127:126,1:126:4520:1:36:0,-34.6325,-403.36	0/0:156:153,3:153:5457:3:108:0,-36.8855,-481.176	0/1:21:7,14:7:252:14:504:-39.3718,0,-16.705	0/1:205:88,117:88:3152:117:4177:-314.363,0,-222.113	0/1:43:21,22:21:722:22:792:-58.6614,0,-52.3459	0/1:18:9,9:9:320:9:324:-23.8064,0,-23.7238	0/1:158:48,110:48:1724:110:3922:-305.515,0,-107.733	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.126	0/0:69:69,0:69:2464:0:0:0,-20.7711,-221.8	0/0:180:178,2:178:6349:2:72:0,-47.3487,-564.627	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7881	0/1:215:79,136:79:2844:136:4873:-373.989,0,-191.417	0/0:198:197,1:197:7015:1:36:0,-56.0057,-627.214	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.775	0/0:54:53,1:53:1896:1:36:0,-12.6573,-167.307	0/0:144:144,0:144:5149:0:0:0,-43.3483,-463.454	0/0:97:97,0:97:3449:0:0:0,-29.1999,-310.608	0/0:65:65,0:65:2313:0:0:0,-19.5669,-208.429	0/0:89:88,0:88:3152:0:0:0,-26.4906,-283.261	0/0:154:154,0:154:5505:0:0:0,-46.3586,-495.559	0/1:30:16,14:16:576:14:496:-35.9434,0,-43.1441	0/0:162:162,0:162:5760:0:0:0,-48.7669,-518.421	0/1:78:35,43:35:1260:43:1544:-115.749,0,-90.2251	0/0:183:183,0:183:6537:0:0:0,-55.0885,-588.38	0/0:158:157,1:157:5633:1:36:0,-43.9645,-503.459	0/0:112:110,2:110:3928:2:72:0,-26.8786,-346.819	0/0:77:77,0:77:2734:0:0:0,-23.1793,-246.277	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4149	0/0:86:86,0:86:3054:0:0:0,-25.8886,-275.083	0/1:148:41,107:41:1468:107:3840:-300.567,0,-87.8503	0/0:226:226,0:226:8074:0:0:0,-68.0328,-726.379	0/0:140:140,0:140:5016:0:0:0,-42.1442,-451.546	0/0:91:91,0:91:3249:0:0:0,-27.3937,-292.614	0/0:117:117,0:117:4184:0:0:0,-35.2205,-376.713	0/0:160:160,0:160:5720:0:0:0,-48.1648,-514.909	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.362	0/1:101:48,53:48:1724:53:1908:-141.585,0,-125.019	0/0:89:89,0:89:3183:0:0:0,-26.7917,-286.649	0/1:99:56,43:56:2016:43:1548:-109.81,0,-151.897	0/1:190:108,82:108:3860:82:2948:-208.344,0,-290.372	0/1:87:28,59:28:981:59:2114:-164.332,0,-62.4114	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.155	0/0:121:121,0:121:4344:0:0:0,-36.4246,-390.977
chr08	31742618	.	ATGCT	TTGCT	180667	PASS	AB=0.440625;ABP=91.1992;AC=163;AF=0.867021;AN=188;AO=8219;CIGAR=1X4M;DP=9954;DPB=9964.4;DPRA=0;EPP=17850.3;EPPR=3490.39;GTI=3;LEN=1;MEANALT=1.75532;MQM=59.6027;MQMR=59.5616;NS=94;NUMALT=1;ODDS=0.946674;PAIRED=0;PAIREDR=0;PAO=26;PQA=692.5;PQR=0;PRO=0;QA=294074;QR=56800;RO=1606;RPL=8219;RPP=17850.3;RPPR=3490.39;RPR=0;RUN=1;SAF=0;SAP=17850.3;SAR=8219;SRF=0;SRP=3490.39;SRR=1606;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1961:-176.739,-16.5567,0	1/1:101:0,101:0:0:101:3609:-324.905,-30.404,0	1/1:115:0,111:0:0:111:3962:-356.303,-33.4143,0	1/1:138:1,137:1:30:137:4859:-434.386,-38.5426,0	1/1:55:0,55:0:0:55:1964:-176.952,-16.5567,0	1/1:37:0,37:0:0:37:1322:-118.801,-11.1381,0	1/1:185:0,185:0:0:185:6591:-593.233,-55.6906,0	1/1:133:0,131:0:0:131:4674:-420.361,-39.4349,0	1/1:91:0,90:0:0:90:3224:-290.006,-27.0927,0	1/1:116:0,115:0:0:115:4125:-370.999,-34.6185,0	1/1:107:0,107:0:0:107:3825:-344.132,-32.2102,0	1/1:72:1,67:1:36:67:2393:-212.015,-17.226,0	1/1:94:0,90:0:0:90:3236:-291.084,-27.0927,0	1/1:111:0,110:0:0:110:3926:-353.125,-33.1133,0	1/1:94:0,91:0:0:91:3268:-293.938,-27.3937,0	1/1:70:0,68:0:0:68:2448:-220.172,-20.47,0	1/1:92:0,92:0:0:92:3285:-295.852,-27.6948,0	1/1:80:0,78:0:0:78:2804:-252.19,-23.4803,0	1/1:44:0,42:0:0:42:1502:-135.106,-12.6433,0	1/1:186:0,186:0:0:186:6619:-595.737,-55.9916,0	1/1:163:0,162:0:0:162:5742:-515.982,-48.7669,0	0/1:107:90,17:90:3211:17:612:-23.2014,0,-257.002	1/1:81:1,79:1:36:79:2810:-249.532,-20.844,0	0/1:128:62,64:62:2176:64:2300:-168.991,0,-157.788	1/1:54:0,53:0:0:53:1885:-169.497,-15.9546,0	0/1:351:180,169:180:6370:169:6068:-440.703,0,-467.788	1/1:173:0,173:0:0:173:6189:-556.891,-52.0782,0	0/1:62:30,31:30:1079:31:1101:-80.7242,0,-78.7443	1/1:194:0,194:0:0:194:6941:-624.619,-58.3998,0	1/1:109:3,104:3:108:104:3736:-325.741,-22.4799,0	0/1:136:87,49:87:3047:49:1764:-118.101,0,-233.444	0/1:15:6,9:6:214:9:324:-24.9904,0,-15.0924	1/1:23:0,23:0:0:23:828:-74.8359,-6.92369,0	1/1:15:0,12:0:0:12:432:-38.8907,-3.61236,0	1/1:14:0,13:0:0:13:468:-42.0916,-3.91339,0	0/1:15:4,11:4:144:11:388:-30.7419,0,-8.79817	1/1:262:1,256:1:36:256:9200:-824.327,-74.1262,0	0/1:113:42,71:42:1481:71:2541:-194.901,0,-99.5669	0/1:143:50,91:50:1778:91:3253:-250.135,0,-117.468	1/1:10:0,10:0:0:10:360:-32.735,-3.0103,0	0/1:133:84,49:84:2931:49:1745:-117.286,0,-223.937	0/1:85:41,44:41:1460:44:1579:-116.755,0,-106.036	1/1:114:0,113:0:0:113:4060:-365.143,-34.0164,0	1/1:107:0,107:0:0:107:3852:-346.747,-32.2102,0	1/1:79:0,73:0:0:73:2601:-233.977,-21.9752,0	1/1:93:0,91:0:0:91:3268:-293.889,-27.3937,0	1/1:105:0,105:0:0:105:3753:-337.669,-31.6082,0	0/1:185:105,78:105:3712:78:2773:-194.308,0,-278.821	1/1:101:0,100:0:0:100:3592:-323.117,-30.103,0	1/1:129:1,128:1:36:128:4596:-410.132,-35.2346,0	1/1:156:3,153:3:108:153:5496:-484.68,-36.8855,0	0/1:21:14,7:14:492:7:252:-16.705,0,-38.2855	0/1:209:118,90:118:4180:90:3228:-227.622,0,-313.311	0/1:43:22,21:22:771:21:752:-55.0233,0,-56.7658	0/1:18:9,8:9:311:8:288:-20.7901,0,-22.6798	0/1:160:109,50:109:3866:50:1791:-113.166,0,-299.94	1/1:29:0,27:0:0:27:972:-87.4427,-8.12781,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:20:0,20:0:0:20:712:-64.3467,-6.0206,0	1/1:72:0,72:0:0:72:2569:-231.244,-21.6742,0	1/1:183:2,175:2:72:175:6258:-556.443,-46.8054,0	1/1:6:0,6:0:0:6:216:-19.7881,-1.80618,0	0/1:215:133,75:133:4697:75:2696:-179.844,0,-359.851	1/1:202:1,201:1:36:201:7166:-640.616,-57.2098,0	1/1:93:0,93:0:0:93:3306:-297.66,-27.9958,0	1/1:55:1,54:1:36:54:1921:-169.559,-12.9584,0	1/1:144:0,143:0:0:143:5082:-456.82,-43.0473,0	1/1:97:0,97:0:0:97:3461:-311.629,-29.1999,0	1/1:65:0,65:0:0:65:2336:-210.44,-19.567,0	1/1:89:3,86:3:108:86:3088:-267.778,-16.7165,0	1/1:155:0,146:0:0:146:5226:-470.047,-43.9504,0	0/1:30:14,16:14:499:16:576:-43.1441,0,-36.2149	1/1:163:0,162:0:0:162:5795:-521.161,-48.7669,0	0/1:78:42,35:42:1479:35:1260:-90.1664,0,-109.847	1/1:198:0,195:0:0:195:6980:-627.896,-58.7009,0	1/1:159:1,156:1:36:156:5540:-495.068,-44.0333,0	1/1:112:2,110:2:69:110:3918:-346.166,-27.1929,0	1/1:76:0,75:0:0:75:2684:-241.369,-22.5773,0	1/1:27:0,27:0:0:27:968:-87.4149,-8.12781,0	1/1:86:0,85:0:0:85:3052:-274.544,-25.5876,0	0/1:150:106,43:106:3753:43:1544:-93.9687,0,-292.087	1/1:227:1,223:1:34:223:7997:-715.84,-64.3817,0	1/1:139:0,136:0:0:136:4896:-440.389,-40.9401,0	1/1:93:1,89:1:36:89:3200:-284.606,-23.8543,0	1/1:114:0,113:0:0:113:4058:-364.778,-34.0164,0	1/1:161:0,158:0:0:158:5661:-509.221,-47.5627,0	1/1:46:0,44:0:0:44:1580:-142.112,-13.2453,0	0/1:101:52,48:52:1863:48:1728:-125.321,0,-137.479	1/1:89:0,87:0:0:87:3132:-281.694,-26.1896,0	0/1:100:42,56:42:1478:56:1999:-150.307,0,-103.452	0/1:193:80,109:80:2837:109:3886:-292.658,0,-198.309	0/1:89:61,28:61:2154:28:1000:-63.5237,0,-167.328	1/1:72:0,71:0:0:71:2518:-226.381,-21.3731,0	1/1:120:0,113:0:0:113:4064:-365.429,-34.0164,0
chr08	31743692	.	G	A	132186	PASS	AB=0.520782;ABP=9.14776;AC=163;AF=0.867021;AN=188;AO=5823;CIGAR=1X;DP=6620;DPB=6620;DPRA=0;EPP=12174.3;EPPR=1620.43;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.4853;MQMR=59.3807;NS=94;NUMALT=1;ODDS=1.64323;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208483;QR=28423;RO=796;RPL=5767;RPP=12165.8;RPPR=1620.43;RPR=56;RUN=1;SAF=5822;SAP=12638.8;SAR=1;SRF=796;SRP=1731.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:68:0,68:0:0:68:2408:-216.954,-20.47,0	1/1:119:0,119:0:0:119:4238:-381.378,-35.8226,0	1/1:208:0,208:0:0:208:7465:-671.057,-62.6142,0	1/1:14:0,14:0:0:14:504:-45.6817,-4.21442,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:71:0,71:0:0:71:2522:-227.208,-21.3731,0	1/1:89:0,89:0:0:89:3200:-288.115,-26.7917,0	1/1:47:0,47:0:0:47:1668:-150.326,-14.1484,0	1/1:104:1,103:1:36:103:3696:-329.217,-27.7088,0	1/1:47:0,47:0:0:47:1678:-150.493,-14.1484,0	1/1:68:0,68:0:0:68:2444:-220.188,-20.47,0	1/1:61:0,61:0:0:61:2196:-197.873,-18.3628,0	1/1:58:0,58:0:0:58:2084:-187.812,-17.4597,0	1/1:52:0,52:0:0:52:1868:-168.369,-15.6536,0	1/1:49:0,49:0:0:49:1764:-159.027,-14.7505,0	1/1:32:0,32:0:0:32:1152:-103.93,-9.63296,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:23:0,23:0:0:23:825:-74.5661,-6.92369,0	1/1:125:0,125:0:0:125:4477:-403.074,-37.6288,0	1/1:167:1,166:1:36:166:5934:-530.54,-46.6788,0	0/1:46:32,14:32:1148:14:500:-31.4888,0,-89.7628	1/1:79:0,79:0:0:79:2829:-254.787,-23.7814,0	0/1:45:21,24:21:756:24:844:-62.7213,0,-54.8163	1/1:38:0,38:0:0:38:1345:-121.218,-11.4391,0	0/1:201:92,109:92:3285:109:3900:-289.887,0,-234.209	1/1:137:0,137:0:0:137:4877:-438.744,-41.2411,0	0/1:21:4,17:4:144:17:612:-49.0918,0,-6.99199	1/1:172:0,172:0:0:172:6152:-551.69,-51.7772,0	1/1:84:5,79:5:180:79:2832:-238.539,-8.73446,0	0/1:94:44,50:44:1554:50:1790:-133.082,0,-111.851	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:9:5,4:5:180:4:144:-10.6009,0,-13.8345	1/1:131:0,131:0:0:131:4708:-423.734,-39.4349,0	0/1:88:39,49:39:1396:49:1760:-132.185,0,-99.4265	0/1:31:14,17:14:500:17:612:-46.0733,0,-35.996	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:61:23,38:23:828:38:1368:-105.05,0,-56.4436	0/1:24:14,10:14:500:10:360:-25.5067,0,-38.0659	1/1:78:0,78:0:0:78:2800:-252.229,-23.4803,0	1/1:50:0,50:0:0:50:1782:-160.637,-15.0515,0	1/1:51:0,51:0:0:51:1820:-163.793,-15.3525,0	1/1:68:0,68:0:0:68:2440:-219.765,-20.47,0	1/1:81:0,81:0:0:81:2901:-261.229,-24.3834,0	0/1:92:36,55:36:1277:55:1964:-149.408,0,-87.4661	1/1:74:0,74:0:0:74:2660:-239.644,-22.2762,0	1/1:124:0,124:0:0:124:4437:-399.487,-37.3277,0	1/1:93:0,93:0:0:93:3332:-298.75,-27.9958,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:65:34,31:34:1216:31:1112:-80.7986,0,-90.1796	0/1:60:24,36:24:860:36:1292:-98.5043,0,-59.66	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.8886	0/1:115:59,56:59:2112:56:2012:-146.725,0,-155.536	1/1:10:0,10:0:0:10:356:-32.3766,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:47:0,47:0:0:47:1692:-152.297,-14.1484,0	1/1:71:1,70:1:36:70:2515:-222.969,-17.7749,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:226:97,129:97:3484:129:4628:-348.563,0,-245.694	1/1:139:3,136:3:108:136:4888:-429.972,-31.768,0	1/1:74:0,74:0:0:74:2656:-239.269,-22.2762,0	1/1:30:0,30:0:0:30:1054:-95.0487,-9.0309,0	1/1:136:0,136:0:0:136:4885:-439.64,-40.9401,0	1/1:152:0,152:0:0:152:5437:-489.43,-45.7566,0	1/1:34:0,34:0:0:34:1224:-109.495,-10.235,0	1/1:51:0,51:0:0:51:1802:-162.439,-15.3525,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:58:30,28:30:1068:28:1008:-73.5766,0,-78.9723	1/1:91:0,91:0:0:91:3232:-291.053,-27.3937,0	0/1:84:44,40:44:1580:40:1424:-102.396,0,-117.117	1/1:113:0,113:0:0:113:4049:-364.528,-34.0164,0	1/1:181:0,181:0:0:181:6466:-581.975,-54.4864,0	1/1:70:1,69:1:36:69:2459:-217.922,-17.4738,0	1/1:136:0,136:0:0:136:4871:-438.486,-40.9401,0	1/1:11:0,11:0:0:11:396:-35.9745,-3.31133,0	1/1:89:1,88:1:36:88:3160:-280.81,-23.1934,0	0/1:90:39,51:39:1381:51:1832:-138.055,0,-97.2549	1/1:160:0,160:0:0:160:5724:-515.228,-48.1648,0	1/1:34:0,34:0:0:34:1205:-108.526,-10.235,0	1/1:44:0,44:0:0:44:1572:-141.771,-13.2453,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:86:0,86:0:0:86:3081:-277.402,-25.8886,0	1/1:13:0,13:0:0:13:468:-42.3968,-3.91339,0	0/1:46:27,19:27:945:19:684:-48.0429,0,-71.5034	1/1:53:0,53:0:0:53:1908:-171.972,-15.9546,0	0/1:29:18,11:18:644:11:394:-27.0687,0,-49.5561	0/1:81:44,37:44:1557:37:1328:-95.4274,0,-115.982	0/1:52:34,18:34:1216:18:640:-42.2711,0,-94.093	1/1:204:0,204:0:0:204:7304:-657.365,-61.4101,0	1/1:93:0,93:0:0:93:3325:-299.427,-27.9958,0
chr08	31743705	.	G	C	13744.6	PASS	AB=0.489994;ABP=4.44434;AC=25;AF=0.132979;AN=188;AO=824;CIGAR=1X;DP=6657;DPB=6657;DPRA=1.14529;EPP=1792.3;EPPR=12641;GTI=0;LEN=1;MEANALT=1.11765;MQM=59.409;MQMR=59.5743;NS=94;NUMALT=1;ODDS=3.08987;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29245;QR=207638;RO=5824;RPL=810;RPP=1672.77;RPPR=11438.1;RPR=14;RUN=1;SAF=810;SAP=1672.77;SAR=14;SRF=5680;SRP=11429.8;SRR=144;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:70:70,0:70:2472:0:0:0,-21.0721,-222.704	0/0:120:120,0:120:4277:0:0:0,-36.1236,-384.919	0/0:201:201,0:201:7168:0:0:0,-60.507,-644.957	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6817	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.813	0/0:84:84,0:84:2988:0:0:0,-25.2865,-269.107	0/0:49:49,0:49:1728:0:0:0,-14.7505,-155.719	0/0:101:100,1:100:3580:1:36:0,-26.8058,-318.785	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.48	0/0:65:64,0:64:2275:0:0:0,-19.2659,-204.645	0/0:61:61,0:61:2167:0:0:0,-18.3628,-195.27	0/0:56:56,0:56:1997:0:0:0,-16.8577,-179.993	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.771	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.907	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3557	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4776	0/0:125:125,0:125:4443:0:0:0,-37.6287,-400.02	0/0:168:167,1:167:5962:1:29:0,-47.6744,-533.757	0/1:51:14,37:14:491:37:1311:-102.919,0,-29.1686	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.851	0/1:44:23,21:23:828:21:752:-54.7563,0,-61.586	0/0:48:48,0:48:1697:0:0:0,-14.4494,-152.884	0/1:203:109,93:109:3912:93:3279:-234.099,0,-290.236	0/0:138:138,0:138:4943:0:0:0,-41.5421,-444.802	0/1:19:15,4:15:540:4:140:-7.22501,0,-43.217	0/0:171:171,0:171:6090:0:0:0,-51.4761,-547.93	0/0:85:80,5:80:2863:5:180:0,-9.03548,-241.328	0/1:93:49,44:49:1764:44:1584:-114.856,0,-131.041	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:9:4,5:4:144:5:180:-13.8345,0,-10.6009	0/0:126:126,0:126:4451:0:0:0,-37.9298,-400.536	0/1:88:44,43:44:1561:43:1512:-109.8,0,-114.231	0/1:31:16,15:16:572:15:523:-38.0583,0,-42.4733	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:59:35,24:35:1230:24:855:-59.4717,0,-93.2417	0/1:23:10,13:10:360:13:455:-34.3396,0,-25.8077	0/0:82:82,0:82:2871:0:0:0,-24.6845,-258.613	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.755	0/0:50:50,0:50:1756:0:0:0,-15.0515,-158.074	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.702	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.688	0/1:93:52,41:52:1863:41:1447:-102.487,0,-139.931	0/0:72:72,0:72:2566:0:0:0,-21.6742,-231.189	0/0:122:122,0:122:4361:0:0:0,-36.7257,-392.647	0/0:95:94,0:94:3341:0:0:0,-28.2968,-299.544	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:67:32,35:32:1137:35:1242:-91.913,0,-82.4246	0/1:61:36,25:36:1292:25:900:-62.9582,0,-98.2013	0/1:8:4,4:4:144:4:144:-10.8886,0,-10.9054	0/1:119:56,63:56:2016:63:2234:-165.301,0,-145.881	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2555	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.627	0/0:71:69,2:69:2461:2:72:0,-14.5364,-214.871	0/0:7:7,0:7:239:0:0:0,-2.10721,-21.8427	0/1:226:126,100:126:4528:100:3576:-253.978,0,-339.584	0/0:137:134,3:134:4784:3:108:0,-31.1659,-420.622	0/0:69:68,1:68:2432:1:36:0,-17.1818,-215.538	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3343	0/0:136:136,0:136:4880:0:0:0,-40.9401,-439.31	0/0:150:149,1:149:5322:1:36:0,-41.5613,-475.491	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.474	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.973	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/1:59:29,30:29:1044:30:1076:-79.3921,0,-76.514	0/0:90:90,0:90:3167:0:0:0,-27.0927,-285.224	0/1:85:40,45:40:1424:45:1587:-117.455,0,-102.304	0/0:115:115,0:115:4074:0:0:0,-34.6184,-366.784	0/0:184:184,0:184:6544:0:0:0,-55.3895,-588.993	0/0:98:97,1:97:3438:1:36:0,-25.9027,-305.995	0/0:135:135,0:135:4800:0:0:0,-40.639,-432.116	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6118	0/0:92:89,1:89:3192:1:36:0,-23.8539,-283.689	0/1:92:53,39:53:1900:39:1376:-96.3134,0,-143.57	0/0:161:161,0:161:5753:0:0:0,-48.4658,-517.818	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.389	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.319	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:82:81,0:81:2896:0:0:0,-24.3834,-260.494	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.3968	0/1:46:20,25:20:716:25:873:-64.9673,0,-50.8616	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.775	0/1:29:10,19:10:360:19:680:-52.7947,0,-24.0144	0/1:81:38,43:38:1360:43:1536:-114.096,0,-98.3008	0/1:53:18,35:18:644:35:1234:-95.4081,0,-42.3314	0/0:200:199,0:199:7084:0:0:0,-59.905,-637.227	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.031
chr08	31853692	.	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chr08	31853709	.	C	A	154665	PASS	AB=0.458304;ABP=45.3842;AC=163;AF=0.867021;AN=188;AO=7115;CIGAR=1X;DP=8643;DPB=8643;DPRA=0;EPP=15453;EPPR=3316.68;GTI=3;LEN=1;MEANALT=1.02128;MQM=53.2119;MQMR=36.9325;NS=94;NUMALT=1;ODDS=1.01555;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=254607;QR=54683;RO=1526;RPL=0;RPP=15453;RPPR=3316.68;RPR=7115;RUN=1;SAF=7115;SAP=15453;SAR=0;SRF=1526;SRP=3316.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:716:-64.7359,-6.0206,0	1/1:101:0,101:0:0:101:3605:-323.691,-30.404,0	1/1:118:0,118:0:0:118:4236:-380.983,-35.5215,0	1/1:231:0,231:0:0:231:8234:-735.903,-69.5379,0	1/1:45:0,45:0:0:45:1620:-145.378,-13.5464,0	1/1:29:0,29:0:0:29:1025:-92.3135,-8.72987,0	1/1:82:0,82:0:0:82:2929:-262.224,-24.6845,0	1/1:137:0,137:0:0:137:4909:-440.725,-41.2411,0	1/1:50:0,50:0:0:50:1773:-159.6,-15.0515,0	1/1:80:0,80:0:0:80:2863:-256.908,-24.0824,0	1/1:31:0,31:0:0:31:1112:-100.084,-9.33193,0	1/1:61:0,61:0:0:61:2176:-195.718,-18.3628,0	1/1:76:0,76:0:0:76:2725:-245.155,-22.8783,0	1/1:73:0,73:0:0:73:2628:-233.357,-21.9752,0	1/1:61:0,61:0:0:61:2188:-196.259,-18.3628,0	1/1:48:0,48:0:0:48:1724:-154.863,-14.4494,0	1/1:78:0,78:0:0:78:2796:-251.518,-23.4803,0	1/1:40:0,40:0:0:40:1417:-127.033,-12.0412,0	1/1:36:0,36:0:0:36:1292:-116.448,-10.8371,0	1/1:210:0,210:0:0:210:7506:-671.178,-63.2163,0	1/1:87:0,87:0:0:87:3116:-278.853,-26.1896,0	0/1:451:332,119:332:11903:119:4260:-247.459,0,-901.411	1/1:26:0,26:0:0:26:932:-83.3484,-7.82678,0	0/1:98:32,66:32:1137:66:2376:-183.017,0,-55.3661	1/1:44:0,44:0:0:44:1580:-141.182,-13.2453,0	0/1:285:139,146:139:4991:146:5210:-381.188,0,-350.96	1/1:144:0,144:0:0:144:5148:-460.586,-43.3483,0	0/1:29:19,10:19:684:10:360:-23.8764,0,-41.7732	1/1:299:0,299:0:0:299:10689:-961.097,-90.008,0	1/1:149:1,148:1:36:148:5316:-471.128,-41.8727,0	0/1:94:44,50:44:1584:50:1788:-130.641,0,-108.09	1/1:4:0,4:0:0:4:140:-12.9169,-1.20412,0	1/1:19:0,19:0:0:19:676:-60.8397,-5.71957,0	0/1:8:2,6:2:68:6:212:-16.9869,0,-2.72363	1/1:7:0,7:0:0:7:248:-22.2094,-2.10721,0	0/1:4:3,1:3:108:1:36:-2.39244,0,-6.42622	1/1:140:0,140:0:0:140:5032:-452.661,-42.1442,0	0/1:242:121,121:121:4340:121:4332:-313.292,0,-249.58	0/1:34:20,14:20:720:14:504:-35.4414,0,-43.3346	1/1:1:0,1:0:0:1:32:-3.19568,-0.30103,0	0/1:241:106,135:106:3795:135:4818:-355.011,0,-209.865	0/1:20:11,9:11:392:9:324:-22.4722,0,-22.8518	1/1:144:0,144:0:0:144:5118:-456.568,-43.3483,0	1/1:39:0,39:0:0:39:1400:-125.749,-11.7402,0	1/1:75:0,75:0:0:75:2700:-240.655,-22.5773,0	1/1:55:0,55:0:0:55:1968:-177.353,-16.5567,0	1/1:103:1,102:1:36:102:3660:-325.831,-28.0253,0	0/1:245:126,119:126:4498:119:4268:-307.369,0,-312.737	1/1:139:0,139:0:0:139:4930:-441.536,-41.8432,0	1/1:164:0,164:0:0:164:5866:-524.737,-49.3689,0	1/1:132:0,132:0:0:132:4722:-424.973,-39.736,0	0/1:8:2,6:2:72:6:216:-17.3045,0,-4.20508	0/1:158:90,68:90:3209:68:2425:-170.517,0,-192.682	0/1:78:42,36:42:1497:36:1262:-90.3892,0,-107.289	0/1:17:5,12:5:180:12:432:-33.453,0,-8.59395	0/1:135:66,69:66:2358:69:2472:-180.771,0,-134.761	1/1:22:0,22:0:0:22:788:-69.7874,-6.62266,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:22:0,22:0:0:22:792:-71.6041,-6.62266,0	1/1:87:0,87:0:0:87:3109:-277.894,-26.1896,0	1/1:126:0,125:0:0:125:4480:-398.584,-37.6288,0	1/1:11:0,11:0:0:11:396:-35.5804,-3.31133,0	0/1:267:142,125:142:5091:125:4453:-319.901,0,-361.705	1/1:161:1,160:1:36:160:5702:-506.526,-44.9851,0	1/1:89:0,88:0:0:88:3152:-281.418,-26.4906,0	1/1:129:1,128:1:36:128:4592:-405.112,-35.3522,0	1/1:124:0,124:0:0:124:4439:-396.413,-37.3277,0	1/1:141:1,140:1:36:140:4994:-443.324,-38.9645,0	1/1:15:0,15:0:0:15:540:-48.7745,-4.51545,0	1/1:59:0,59:0:0:59:2116:-188.4,-17.7608,0	1/1:94:0,94:0:0:94:3364:-302.362,-28.2968,0	0/1:12:9,3:9:324:3:104:-6.07017,0,-24.9293	1/1:84:0,84:0:0:84:3024:-272.093,-25.2865,0	0/1:53:35,18:35:1260:18:644:-42.2406,0,-77.5678	1/1:63:0,63:0:0:63:2260:-202.746,-18.9649,0	1/1:171:0,171:0:0:171:6135:-549.089,-51.4761,0	1/1:94:0,94:0:0:94:3376:-303.547,-28.2968,0	1/1:89:1,88:1:36:88:3160:-281.363,-23.8109,0	1/1:17:0,17:0:0:17:612:-55.3187,-5.11751,0	1/1:123:0,123:0:0:123:4382:-392.552,-37.0267,0	0/1:127:63,64:63:2264:64:2296:-168.022,0,-129.689	1/1:160:0,160:0:0:160:5740:-514.25,-48.1648,0	1/1:84:0,84:0:0:84:3020:-269.576,-25.2865,0	1/1:46:0,46:0:0:46:1652:-148.476,-13.8474,0	1/1:62:0,62:0:0:62:2224:-199.103,-18.6639,0	1/1:85:0,85:0:0:85:3040:-272.359,-25.5876,0	1/1:19:0,19:0:0:19:676:-60.9352,-5.71957,0	0/1:56:34,22:34:1224:22:784:-53.9257,0,-73.7748	1/1:63:0,63:0:0:63:2262:-203.385,-18.9649,0	0/1:36:15,21:15:540:21:756:-57.3404,0,-29.7011	0/1:68:35,33:35:1256:33:1188:-86.0713,0,-73.0236	0/1:40:27,13:27:972:13:468:-30.2857,0,-70.3402	1/1:131:0,131:0:0:131:4704:-421.748,-39.4349,0	1/1:78:0,78:0:0:78:2781:-249.164,-23.4803,0
chr08	31853838	.	CCTCC	CCTCT,TCTCT	121642	PASS	AB=0.484584,0.510724;ABP=6.08995,4.50064;AC=163,25;AF=0.867021,0.132979;AN=188;AO=4753,770;CIGAR=4M1X,1X3M1X;DP=5562;DPB=5562;DPRA=0,1.08121;EPP=10324,1675.04;EPPR=22.5536;GTI=0;LEN=1,5;MEANALT=1.59574,2.32143;MQM=59.8508,45.5429;MQMR=60;NS=94;NUMALT=2;ODDS=0.174449;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=49.5,49.5;PQR=0;PRO=1;QA=169701,27093;QR=323;RO=9;RPL=0,0;RPP=10324,1675.04;RPPR=22.5536;RPR=4753,770;RUN=1,1;SAF=0,0;SAP=10324,1675.04;SAR=4753,770;SRF=0;SRP=22.5536;SRR=9;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,54,0:0:0:54,0:1906,0:-171.452,-16.2556,0,-171.452,-16.2556,-171.452	1/1:34:0,34,0:0:0:34,0:1212,0:-109.386,-10.235,0,-109.386,-10.235,-109.386	1/1:152:0,151,0:0:0:151,0:5388,0:-484.652,-45.4555,0,-484.652,-45.4555,-484.652	1/1:111:0,111,0:0:0:111,0:3976,0:-358.027,-33.4143,0,-358.027,-33.4143,-358.027	1/1:43:0,43,0:0:0:43,0:1548,0:-139.599,-12.9443,0,-139.599,-12.9443,-139.599	1/1:27:0,27,0:0:0:27,0:953,0:-86.0842,-8.12781,0,-86.0842,-8.12781,-86.0842	1/1:47:0,47,0:0:0:47,0:1676,0:-151.127,-14.1484,0,-151.127,-14.1484,-151.127	1/1:59:0,59,0:0:0:59,0:2104,0:-189.617,-17.7608,0,-189.617,-17.7608,-189.617	1/1:63:0,63,0:0:0:63,0:2256,0:-203.303,-18.9649,0,-203.303,-18.9649,-203.303	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/1:63:0,63,0:0:0:63,0:2253,0:-203.023,-18.9649,0,-203.023,-18.9649,-203.023	1/1:84:1,83,0:1:36:83,0:2967,0:-263.655,-21.6882,0,-263.956,-24.9855,-266.893	1/1:42:0,42,0:0:0:42,0:1496,0:-134.934,-12.6433,0,-134.934,-12.6433,-134.934	1/1:61:0,59,0:0:0:59,0:2108,0:-189.667,-17.7608,0,-189.667,-17.7608,-189.667	1/1:46:0,46,0:0:0:46,0:1647,0:-148.505,-13.8474,0,-148.505,-13.8474,-148.505	1/1:47:0,47,0:0:0:47,0:1684,0:-151.847,-14.1484,0,-151.847,-14.1484,-151.847	1/1:43:0,43,0:0:0:43,0:1544,0:-139.252,-12.9443,0,-139.252,-12.9443,-139.252	1/1:25:0,25,0:0:0:25,0:892,0:-80.5997,-7.52575,0,-80.5997,-7.52575,-80.5997	1/1:30:0,28,0:0:0:28,0:1004,0:-90.2696,-8.42884,0,-90.2696,-8.42884,-90.2696	1/1:60:0,59,0:0:0:59,0:2120,0:-190.709,-17.7608,0,-190.709,-17.7608,-190.709	1/1:90:0,90,0:0:0:90,0:3216,0:-289.632,-27.0927,0,-289.632,-27.0927,-289.632	1/2:121:0,34,86:0:0:34,86:1211,3015:-339.28,-240.582,-230.347,-98.7972,0,-72.9087	1/1:47:0,47,0:0:0:47,0:1675,0:-151.036,-14.1484,0,-151.036,-14.1484,-151.036	1/2:42:0,32,10:0:0:32,10:1143,356:-122.298,-29.1066,-19.4737,-93.5457,0,-90.5354	1/1:60:0,59,0:0:0:59,0:2108,0:-189.629,-17.7608,0,-189.629,-17.7608,-189.629	1/2:140:0,63,77:0:0:63,77:2256,2727:-401.205,-217.221,-198.256,-184.336,0,-161.157	1/1:142:0,142,0:0:0:142,0:5069,0:-455.972,-42.7463,0,-455.972,-42.7463,-455.972	1/2:17:0,7,10:0:0:7,10:252,353:-49.0046,-28.4368,-26.3296,-20.9217,0,-17.9114	1/1:151:0,150,0:0:0:150,0:5362,0:-482.415,-45.1545,0,-482.415,-45.1545,-482.415	1/1:65:0,61,3:0:0:61,3:2160,107:-193.457,-18.3628,0,-184.814,-9.70931,-183.91	1/2:48:0,27,21:0:0:27,21:972,739:-138.983,-59.7397,-51.6118,-79.5967,0,-73.2751	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:24:0,24,0:0:0:24,0:860,0:-77.7172,-7.22472,0,-77.7172,-7.22472,-77.7172	1/2:7:0,2,5:0:0:2,5:72,174:-19.9987,-14.1181,-13.516,-6.23466,0,-4.72951	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:15:0,8,7:0:0:8,7:284,250:-43.5805,-20.4389,-18.0307,-23.4951,0,-21.3879	1/1:100:0,99,0:0:0:99,0:3536,0:-318.092,-29.802,0,-318.092,-29.802,-318.092	1/2:89:0,36,52:0:0:36,52:1282,1813:-249.431,-144.936,-134.099,-104.536,0,-88.8822	1/2:55:0,31,24:0:0:31,24:1104,852:-158.473,-68.4863,-59.1544,-90.3387,0,-83.114	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:66:0,33,33:0:0:33,33:1184,1154:-189.291,-92.7079,-82.774,-96.9343,0,-87.0003	1/2:31:0,12,19:0:0:12,19:432,681:-89.688,-54.4351,-50.8227,-35.6088,0,-29.8893	1/1:137:0,135,0:0:0:135,0:4821,0:-432.747,-40.6391,0,-432.747,-40.6391,-432.747	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7925,-9.0309,0,-96.7925,-9.0309,-96.7925	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9144,-8.72987,0,-93.9144,-8.72987,-93.9144	1/1:60:0,60,0:0:0:60,0:2160,0:-194.666,-18.0618,0,-194.666,-18.0618,-194.666	1/1:79:3,76,0:3:107:76,0:2723,0:-235.331,-13.7992,0,-236.234,-22.8783,-244.957	1/2:96:0,46,50:0:0:46,50:1656,1763:-278.37,-143.245,-129.398,-135.48,0,-120.429	1/1:71:0,70,0:0:0:70,0:2478,0:-222.96,-21.0721,0,-222.96,-21.0721,-222.96	1/1:75:0,74,0:0:0:74,0:2652,0:-238.525,-22.2762,0,-238.525,-22.2762,-238.525	1/1:78:0,77,0:0:0:77,0:2756,0:-247.918,-23.1793,0,-247.918,-23.1793,-247.918	1/2:13:0,11,2:0:0:11,2:396,66:-37.9855,-5.64774,-2.33641,-32.6714,0,-32.0694	1/2:99:0,61,37:0:0:61,37:2167,1311:-280.753,-104.175,-85.8125,-176.588,0,-165.45	1/2:40:0,22,18:0:0:22,18:771,635:-113.496,-50.7551,-44.1325,-63.0876,0,-57.6691	1/2:19:0,5,14:0:0:5,14:176,486:-52.7898,-38.4576,-36.9524,-14.6799,0,-10.4654	1/2:85:0,42,43:0:0:42,43:1508,1501:-244.368,-121.356,-108.713,-123.364,0,-110.42	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/1:4:0,4,0:0:0:4,0:144,0:-1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chr08	31914885	.	G	T	14145.1	PASS	AB=0.390491;ABP=198.002;AC=25;AF=0.132979;AN=188;AO=741;CIGAR=1X;DP=10452;DPB=10452;DPRA=0.776921;EPP=11.8749;EPPR=21.6864;GTI=3;LEN=1;MEANALT=1;MQM=52.6302;MQMR=52.4132;NS=94;NUMALT=1;ODDS=4.92951;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26123;QR=346304;RO=9711;RPL=741;RPP=1612.07;RPPR=21090.2;RPR=0;RUN=1;SAF=398;SAP=11.8749;SAR=343;SRF=5000;SRP=21.6864;SRR=4711;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:68:68,0:68:2422:0:0:0,-20.47,-217.405	0/0:175:174,1:174:6236:1:21:0,-50.8795,-557.289	0/0:218:217,1:217:7717:1:36:0,-62.0353,-684.926	0/0:234:234,0:234:8368:0:0:0,-70.441,-746.044	0/0:127:127,0:127:4539:0:0:0,-38.2308,-405.628	0/0:64:64,0:64:2288:0:0:0,-19.2659,-205.255	0/0:93:93,0:93:3295:0:0:0,-27.9958,-295.67	0/0:173:173,0:173:6129:0:0:0,-52.0782,-548.424	0/0:175:174,1:174:6199:1:32:0,-49.4972,-551.333	0/0:102:102,0:102:3639:0:0:0,-30.7051,-325.202	0/0:93:93,0:93:3316:0:0:0,-27.9958,-295.183	0/0:163:163,0:163:5817:0:0:0,-49.0679,-518.114	0/0:136:136,0:136:4858:0:0:0,-40.9401,-433.346	0/0:116:116,0:116:4156:0:0:0,-34.9195,-370.742	0/0:111:111,0:111:3972:0:0:0,-33.4143,-354.621	0/0:99:99,0:99:3517:0:0:0,-29.802,-314.156	0/0:142:142,0:142:5036:0:0:0,-42.7463,-452.291	0/0:83:83,0:83:2980:0:0:0,-24.9855,-267.459	0/0:61:61,0:61:2179:0:0:0,-18.3628,-195.51	0/0:190:190,0:190:6776:0:0:0,-57.1957,-602.567	0/0:182:182,0:182:6511:0:0:0,-54.7875,-581.521	0/1:36:14,22:14:500:22:783:-58.8376,0,-34.1192	0/0:87:87,0:87:3074:0:0:0,-26.1896,-272.251	0/1:118:70,48:70:2504:48:1684:-115.828,0,-188.314	0/0:99:99,0:99:3548:0:0:0,-29.802,-316.377	0/1:160:118,42:118:4220:42:1472:-83.8647,0,-329.205	0/0:222:222,0:222:7924:0:0:0,-66.8287,-706.796	0/1:53:33,20:33:1180:20:712:-47.2981,0,-89.3516	0/0:165:165,0:165:5885:0:0:0,-49.6699,-520.871	0/0:79:76,3:76:2724:3:108:0,-13.7526,-233.509	0/1:107:61,46:61:2167:46:1640:-113.865,0,-161.15	0/1:9:2,7:2:68:7:228:-18.1268,0,-3.71757	0/1:9:8,1:8:288:1:36:-0.839245,0,-23.2403	0/1:7:4,3:4:144:3:108:-7.93095,0,-11.2064	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4501	0/1:10:4,6:4:144:6:216:-16.6712,0,-10.1933	0/0:352:352,0:352:12602:0:0:0,-105.963,-1116.87	0/1:84:42,42:42:1508:42:1479:-107.394,0,-109.382	0/1:82:56,26:56:1997:26:916:-57.5685,0,-153.63	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.98229	0/1:162:105,57:105:3755:57:2007:-131.078,0,-287.719	0/1:61:46,15:46:1632:15:532:-29.4326,0,-126.637	0/0:294:294,0:294:10519:0:0:0,-88.5028,-935.536	0/0:131:131,0:131:4676:0:0:0,-39.4349,-417.66	0/0:99:99,0:99:3508:0:0:0,-29.802,-312.764	0/0:97:97,0:97:3459:0:0:0,-29.1999,-307.585	0/0:155:155,0:155:5540:0:0:0,-46.6596,-494.97	0/1:154:79,75:79:2806:75:2640:-190.286,0,-204.081	0/0:83:83,0:83:2961:0:0:0,-24.9855,-265.147	0/0:178:178,0:178:6341:0:0:0,-53.5833,-564.393	0/0:130:130,0:130:4656:0:0:0,-39.1339,-414.593	0/1:6:1,5:1:36:5:180:-14.2533,0,-1.72994	0/1:134:71,63:71:2518:63:2207:-157.491,0,-184.142	0/1:36:21,15:21:756:15:531:-37.0046,0,-57.1107	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7094	0/1:106:82,24:82:2927:24:847:-43.5041,0,-229.986	0/0:42:42,0:42:1508:0:0:0,-12.6433,-132.917	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4099	0/0:14:14,0:14:461:0:0:0,-4.21442,-41.7326	0/0:120:120,0:120:4274:0:0:0,-36.1236,-380.875	0/0:165:165,0:165:5891:0:0:0,-49.6699,-524.274	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:51:50,1:50:1783:1:36:0,-11.8315,-156.315	0/0:209:209,0:209:7465:0:0:0,-62.9153,-666.846	0/0:85:85,0:85:3005:0:0:0,-25.5875,-268.913	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.059	0/0:185:185,0:185:6574:0:0:0,-55.6905,-586.18	0/0:130:130,0:130:4607:0:0:0,-39.1339,-409.787	0/0:82:82,0:82:2931:0:0:0,-24.6845,-259.3	0/0:92:92,0:92:3283:0:0:0,-27.6948,-293.423	0/0:143:143,0:143:5102:0:0:0,-43.0473,-455.337	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.6111	0/0:83:83,0:83:2955:0:0:0,-24.9855,-264.433	0/1:61:43,18:43:1520:18:636:-39.0256,0,-117.913	0/0:236:236,0:236:8399:0:0:0,-71.0431,-750.949	0/0:151:150,1:150:5336:1:36:0,-41.9194,-473.417	0/0:182:182,0:182:6507:0:0:0,-54.7875,-583.266	0/0:61:61,0:61:2164:0:0:0,-18.3628,-194.572	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3091	0/0:143:142,1:142:5079:1:36:0,-39.4541,-451.811	0/1:98:65,33:65:2332:33:1151:-73.9332,0,-179.52	0/0:211:211,0:211:7520:0:0:0,-63.5173,-671.348	0/0:117:117,0:117:4152:0:0:0,-35.2205,-370.012	0/0:118:118,0:118:4202:0:0:0,-35.5215,-374.143	0/0:161:161,0:161:5705:0:0:0,-48.4658,-510.01	0/0:229:228,1:228:8106:1:36:0,-65.3376,-718.448	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.048	0/1:114:61,53:61:2166:53:1892:-135.403,0,-159.191	0/0:112:112,0:112:4007:0:0:0,-33.7154,-357.558	0/1:44:31,13:31:1103:13:460:-27.6332,0,-85.0812	0/1:124:80,44:80:2876:44:1552:-100.511,0,-216.91	0/1:91:39,52:39:1400:52:1837:-136.575,0,-97.3831	0/0:125:125,0:125:4468:0:0:0,-37.6287,-398.152	0/0:225:225,0:225:8043:0:0:0,-67.7317,-716.368
chr08	31921754	.	CGCA	TGCG,TGCA	180609	PASS	AB=0.434394,0.561133;ABP=78.2304,68.3228;AC=162,26;AF=0.861702,0.138298;AN=188;AO=7075,1153;CIGAR=1X2M1X,1X3M;DP=8262;DPB=8262.25;DPRA=0,1.04766;EPP=15366.2,2506.72;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.7234,2.23684;MQM=59.3861,59.9957;MQMR=60;NS=94;NUMALT=2;ODDS=5.45199;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=249813,41292;QR=36;RO=1;RPL=0,0;RPP=15366.2,2506.72;RPPR=5.18177;RPR=7075,1153;RUN=1,1;SAF=7075,1153;SAP=15366.2,2506.72;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:89:0,89,0:0:0:89,0:3115,0:-280.516,-26.7917,0,-280.516,-26.7917,-280.516	1/1:69:0,68,1:0:0:68,1:2386,21:-214.762,-20.47,0,-213.175,-18.6712,-212.874	1/1:173:0,171,0:0:0:171,0:6005,0:-539.998,-51.4761,0,-539.998,-51.4761,-539.998	1/1:188:0,188,0:0:0:188,0:6541,0:-587.731,-56.5936,0,-587.731,-56.5936,-587.731	1/1:44:0,44,0:0:0:44,0:1549,0:-139.691,-13.2453,0,-139.691,-13.2453,-139.691	1/1:39:0,38,1:0:0:38,1:1352,36:-121.62,-11.4391,0,-118.682,-8.1419,-118.381	1/1:85:0,85,0:0:0:85,0:3019,0:-271.927,-25.5876,0,-271.927,-25.5876,-271.927	1/1:130:0,129,0:0:0:129,0:4543,0:-408.565,-38.8329,0,-408.565,-38.8329,-408.565	1/1:154:0,153,1:0:0:153,1:5389,36:-484.318,-46.0576,0,-481.381,-42.7603,-481.08	1/1:105:0,105,0:0:0:105,0:3700,0:-332.611,-31.6082,0,-332.611,-31.6082,-332.611	1/1:60:0,60,0:0:0:60,0:2144,0:-193.18,-18.0618,0,-193.18,-18.0618,-193.18	1/1:123:0,123,0:0:0:123,0:4337,0:-389.874,-37.0267,0,-389.874,-37.0267,-389.874	1/1:117:0,117,0:0:0:117,0:4147,0:-373.227,-35.2205,0,-373.227,-35.2205,-373.227	1/1:88:0,88,0:0:0:88,0:3108,0:-279.895,-26.4906,0,-279.895,-26.4906,-279.895	1/1:93:0,93,0:0:0:93,0:3311,0:-298.197,-27.9958,0,-298.197,-27.9958,-298.197	1/1:60:0,59,1:0:0:59,1:2073,36:-186.467,-17.7608,0,-183.529,-14.4635,-183.228	1/1:28:0,28,0:0:0:28,0:980,0:-88.3977,-8.42884,0,-88.3977,-8.42884,-88.3977	1/1:29:0,27,0:0:0:27,0:971,0:-87.3877,-8.12781,0,-87.3877,-8.12781,-87.3877	1/1:45:0,45,0:0:0:45,0:1603,0:-144.542,-13.5464,0,-144.542,-13.5464,-144.542	1/1:127:0,127,0:0:0:127,0:4524,0:-407.325,-38.2308,0,-407.325,-38.2308,-407.325	1/1:113:0,112,0:0:0:112,0:3917,0:-351.64,-33.7154,0,-351.64,-33.7154,-351.64	1/2:92:0,33,58:0:0:33,58:1163,2084:-264.672,-170.01,-160.076,-94.6567,0,-77.197	1/1:100:0,99,0:0:0:99,0:3490,0:-313.736,-29.802,0,-313.736,-29.802,-313.736	1/2:76:0,34,41:0:0:34,41:1193,1468:-216.757,-119.714,-109.479,-97.0374,0,-84.6952	1/1:62:0,61,0:0:0:61,0:2164,0:-194.771,-18.3628,0,-194.771,-18.3628,-194.771	1/2:230:1,90,139:1:36:90,139:3187,4990:-663.176,-404.106,-379.951,-256.429,0,-217.524	1/1:231:0,230,1:0:0:230,1:8133,36:-731.469,-69.2369,0,-728.532,-65.9397,-728.231	1/2:40:0,18,22:0:0:18,22:636,792:-116.774,-64.983,-59.5645,-52.1472,0,-45.5245	1/1:149:0,149,0:0:0:149,0:5292,0:-476.411,-44.8535,0,-476.411,-44.8535,-476.411	1/1:94:0,87,7:0:0:87,7:3066,252:-275.797,-26.1896,0,-255.234,-5.26786,-253.127	1/2:133:0,53,78:0:0:53,78:1865,2800:-379.968,-228.399,-212.445,-151.563,0,-128.083	1/2:15:0,6,9:0:0:6,9:216,324:-44.4195,-26.7966,-24.9904,-17.9828,0,-15.2735	1/1:10:0,10,0:0:0:10,0:355,0:-32.2904,-3.0103,0,-32.2904,-3.0103,-32.2904	1/2:9:0,5,4:0:0:5,4:167,144:-25.6023,-12.1095,-10.6043,-13.841,0,-12.6369	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:8:0,5,3:0:0:5,3:179,108:-23.7675,-9.17208,-7.66693,-14.9545,0,-14.0514	1/1:195:0,193,0:0:0:193,0:6820,0:-612.675,-58.0988,0,-612.675,-58.0988,-612.675	1/2:108:0,45,63:0:0:45,63:1596,2243:-313.189,-183.169,-169.623,-130.375,0,-111.41	1/2:74:0,26,48:0:0:26,48:913,1724:-215.29,-140.996,-133.169,-74.6479,0,-60.1985	1/1:2:0,2,0:0:0:2,0:60,0:-5.69826,-0.60206,0,-5.69826,-0.60206,-5.69826	1/2:123:0,82,41:0:0:82,41:2925,1476:-359.228,-120.794,-96.1095,-238.793,0,-226.45	1/2:44:0,22,22:0:0:22,22:772,792:-127.805,-64.983,-58.3604,-63.177,0,-56.5543	1/1:118:0,117,0:0:0:117,0:4126,0:-370.899,-35.2205,0,-370.899,-35.2205,-370.899	1/1:69:0,69,0:0:0:69,0:2421,0:-218.126,-20.7711,0,-218.126,-20.7711,-218.126	1/1:66:0,66,0:0:0:66,0:2305,0:-207.695,-19.868,0,-207.695,-19.868,-207.695	1/1:138:0,138,0:0:0:138,0:4865,0:-437.983,-41.5421,0,-437.983,-41.5421,-437.983	1/1:97:0,97,0:0:0:97,0:3443,0:-309.998,-29.1999,0,-309.998,-29.1999,-309.998	1/2:182:0,97,85:0:0:97,85:3412,3037:-525.671,-247.971,-218.771,-278.055,0,-252.467	1/1:99:0,98,0:0:0:98,0:3480,0:-312.942,-29.5009,0,-312.942,-29.5009,-312.942	1/1:144:0,144,0:0:0:144,0:5089,0:-458.132,-43.3483,0,-458.132,-43.3483,-458.132	1/1:45:0,44,1:0:0:44,1:1572,36:-141.375,-13.2453,0,-138.437,-9.94808,-138.136	1/2:14:0,3,11:0:0:3,11:108,392:-41.1218,-32.3087,-31.4056,-9.17208,0,-5.86075	1/2:81:0,36,45:0:0:36,45:1268,1589:-232.984,-129.752,-118.915,-103.584,0,-90.0377	1/2:41:0,22,18:0:0:22,18:780,648:-116.415,-52.8735,-46.2509,-63.5391,0,-58.1206	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/2:115:0,40,75:0:0:40,75:1401,2660:-331.054,-217.067,-205.026,-114.338,0,-91.7609	1/1:49:0,48,0:0:0:48,0:1694,0:-152.306,-14.4494,0,-152.306,-14.4494,-1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chr08	31921787	.	G	A	376560	PASS	AB=0.432773;ABP=171.181;AC=162;AF=0.861702;AN=188;AO=14037;CIGAR=1X;DP=16509;DPB=16509;DPRA=0;EPP=30466.6;EPPR=5357.86;GTI=0;LEN=1;MEANALT=1.05319;MQM=48.5289;MQMR=59.5312;NS=94;NUMALT=1;ODDS=0.26669;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=496051;QR=86611;RO=2466;RPL=6750;RPP=47.6199;RPPR=47.986;RPR=7287;RUN=1;SAF=6752;SAP=46.9578;SAR=7285;SRF=1120;SRP=47.986;SRR=1346;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:130:0,130:0:0:130:4573:-401.946,-39.1339,0	1/1:180:1,179:1:36:179:6318:-539.493,-50.5871,0	1/1:258:0,258:0:0:258:9159:-801.242,-77.6657,0	1/1:364:1,363:1:36:363:12841:-1118.69,-105.977,0	1/1:79:0,79:0:0:79:2806:-248.044,-23.7814,0	1/1:106:1,105:1:36:105:3726:-319.141,-28.3109,0	1/1:208:0,208:0:0:208:7360:-635.872,-62.6142,0	1/1:255:0,255:0:0:255:9052:-785.31,-76.7627,0	1/1:247:3,244:3:108:244:8617:-743.075,-64.2792,0	1/1:156:0,156:0:0:156:5528:-487.708,-46.9607,0	1/1:118:0,118:0:0:118:4184:-367.454,-35.5215,0	1/1:186:0,186:0:0:186:6543:-573.59,-55.9916,0	1/1:182:0,182:0:0:182:6411:-560.611,-54.7875,0	1/1:174:0,174:0:0:174:6129:-538.57,-52.3792,0	1/1:157:0,157:0:0:157:5519:-485.892,-47.2617,0	1/1:108:0,108:0:0:108:3780:-333.133,-32.5112,0	1/1:75:0,75:0:0:75:2636:-227.534,-22.5773,0	1/1:86:0,86:0:0:86:3047:-262.278,-25.8886,0	1/1:69:0,69:0:0:69:2417:-211.818,-20.7711,0	1/1:223:0,223:0:0:223:7930:-696.859,-67.1297,0	1/1:287:3,284:3:108:284:9977:-861.401,-76.3204,0	0/1:161:102,59:102:3616:59:2081:-135.013,0,-277.124	1/1:217:0,217:0:0:217:7695:-670.459,-65.3235,0	0/1:237:127,109:127:4496:109:3853:-265.571,0,-333.051	1/1:105:0,105:0:0:105:3728:-329.371,-31.6082,0	0/1:508:310,198:310:10921:198:6954:-453.046,0,-829.746	1/1:445:1,444:1:36:444:15783:-1385.11,-130.36,0	0/1:76:45,31:45:1575:31:1087:-73.0664,0,-119.091	1/1:445:0,445:0:0:445:15800:-1371.76,-133.958,0	1/1:203:9,194:9:316:194:6913:-578.386,-32.3302,0	0/1:278:148,129:148:5178:129:4566:-313.604,0,-382.408	0/1:22:13,9:13:455:9:320:-20.1554,0,-34.6593	1/1:20:0,20:0:0:20:707:-61.9538,-6.0206,0	0/1:9:4,5:4:125:5:180:-13.635,0,-8.84935	1/1:7:0,7:0:0:7:252:-22.4511,-2.10721,0	0/1:23:15,8:15:523:8:288:-18.5738,0,-40.3669	1/1:341:1,340:1:36:340:11976:-1046.04,-99.062,0	0/1:228:131,97:131:4606:97:3416:-230.152,0,-345.829	0/1:144:93,51:93:3221:51:1794:-113.608,0,-246.728	1/1:3:0,3:0:0:3:108:-9.94097,-0.90309,0	0/1:276:139,137:139:4930:137:4869:-346.213,0,-360.72	0/1:74:42,32:42:1442:32:1127:-77.4646,0,-107.731	1/1:250:0,249:0:0:249:8795:-769.761,-74.9565,0	1/1:148:0,148:0:0:148:5230:-455.683,-44.5524,0	1/1:117:0,117:0:0:117:4093:-358.292,-35.2205,0	1/1:244:0,244:0:0:244:8632:-756.804,-73.4513,0	1/1:184:0,184:0:0:184:6530:-566.501,-55.3895,0	0/1:360:169,190:169:5942:190:6701:-476.284,0,-425.219	1/1:198:0,198:0:0:198:7004:-613.958,-59.6039,0	1/1:288:3,285:3:108:285:10120:-874.749,-76.6215,0	1/1:137:1,136:1:36:136:4799:-411.066,-37.6428,0	0/1:20:12,8:12:413:8:288:-19.4499,0,-31.4772	0/1:216:132,84:132:4625:84:3004:-196.232,0,-351.304	0/1:108:54,54:54:1908:54:1927:-133.361,0,-139.427	0/1:15:6,9:6:201:9:320:-22.4401,0,-13.9016	0/1:229:145,84:145:5157:84:2986:-191.432,0,-395.23	1/1:100:0,100:0:0:100:3482:-304.095,-30.103,0	1/1:18:0,18:0:0:18:633:-55.549,-5.41854,0	1/1:24:0,24:0:0:24:852:-74.2447,-7.22472,0	1/1:170:0,170:0:0:170:5980:-519.993,-51.1751,0	1/1:152:0,152:0:0:152:5341:-468.806,-45.7566,0	1/1:30:0,30:0:0:30:1067:-93.9679,-9.0309,0	0/1:333:169,164:169:5939:164:5814:-402.171,0,-433.728	1/1:408:6,402:6:207:402:14260:-1222.91,-103.853,0	1/1:151:0,149:0:0:149:5264:-465.155,-44.8535,0	1/1:137:0,137:0:0:137:4853:-423.143,-41.2411,0	1/1:288:0,288:0:0:288:10195:-891.724,-86.6966,0	1/1:236:3,233:3:104:233:8178:-714.064,-61.346,0	1/1:77:0,77:0:0:77:2702:-238.095,-23.1793,0	1/1:147:0,147:0:0:147:5206:-452.82,-44.2514,0	1/1:129:0,129:0:0:129:4499:-391.413,-38.8329,0	0/1:19:8,11:8:275:11:396:-29.7868,0,-19.3639	1/1:189:0,189:0:0:189:6655:-584.289,-56.8947,0	0/1:171:91,80:91:3191:80:2836:-193.172,0,-235.901	1/1:369:0,369:0:0:369:13002:-1130.63,-111.08,0	1/1:293:0,293:0:0:293:10419:-912.394,-88.2018,0	1/1:148:0,148:0:0:148:5227:-451.3,-44.5524,0	1/1:220:3,217:3:108:217:7713:-661.944,-56.1514,0	1/1:18:0,18:0:0:18:627:-54.9111,-5.41854,0	1/1:176:1,175:1:36:175:6211:-543.169,-49.3881,0	0/1:204:107,97:107:3781:97:3453:-238.048,0,-278.483	1/1:372:1,371:1:36:371:13205:-1147.77,-108.392,0	1/1:162:0,162:0:0:162:5701:-500.373,-48.7669,0	1/1:146:0,146:0:0:146:5140:-448.638,-43.9504,0	1/1:101:0,101:0:0:101:3554:-306.711,-30.404,0	1/1:275:0,275:0:0:275:9671:-848.383,-82.7833,0	1/1:43:0,43:0:0:43:1510:-131.666,-12.9443,0	0/1:164:101,63:101:3503:63:2187:-142.925,0,-264.913	1/1:149:0,149:0:0:149:5214:-451.832,-44.8535,0	0/1:91:50,41:50:1765:41:1427:-98.1879,0,-131.289	0/1:159:90,69:90:3117:69:2399:-162.481,0,-232.84	0/1:159:124,35:124:4323:35:1192:-57.8787,0,-341.354	1/1:242:1,241:1:36:241:8557:-742.542,-69.251,0	1/1:255:0,255:0:0:255:8950:-786.245,-76.7627,0
chr08	31921841	.	T	C	150015	PASS	AB=0.436166;ABP=87.565;AC=163;AF=0.867021;AN=188;AO=7402;CIGAR=1X;DP=8768;DPB=8768;DPRA=0;EPP=16067.6;EPPR=2954.04;GTI=2;LEN=1;MEANALT=1.04255;MQM=38.4121;MQMR=59.0132;NS=94;NUMALT=1;ODDS=1.44377;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264822;QR=48617;RO=1359;RPL=7402;RPP=16076.2;RPPR=2954.04;RPR=0;RUN=1;SAF=1;SAP=16067.6;SAR=7401;SRF=0;SRP=2954.04;SRR=1359;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1612:-135.88,-13.5464,0	1/1:115:1,114:1:36:114:4096:-340.219,-31.0292,0	1/1:98:0,98:0:0:98:3485:-291.652,-29.5009,0	1/1:185:0,185:0:0:185:6616:-560.751,-55.6906,0	1/1:40:0,40:0:0:40:1428:-123.249,-12.0412,0	1/1:71:0,71:0:0:71:2552:-215.376,-21.3731,0	1/1:128:0,128:0:0:128:4556:-382.936,-38.5318,0	1/1:132:0,132:0:0:132:4701:-393.963,-39.736,0	1/1:103:2,101:2:72:101:3601:-292.302,-24.1694,0	1/1:61:0,61:0:0:61:2181:-186.243,-18.3628,0	1/1:59:0,59:0:0:59:2095:-179.273,-17.7608,0	1/1:68:0,68:0:0:68:2436:-204.566,-20.47,0	1/1:69:0,69:0:0:69:2471:-205.827,-20.7711,0	1/1:85:0,85:0:0:85:3044:-260.166,-25.5876,0	1/1:64:0,64:0:0:64:2296:-195.727,-19.2659,0	1/1:52:0,52:0:0:52:1864:-158.85,-15.6536,0	1/1:49:0,49:0:0:49:1760:-148.409,-14.7505,0	1/1:56:0,56:0:0:56:2016:-169.419,-16.8577,0	1/1:24:0,24:0:0:24:849:-70.3315,-7.22472,0	1/1:103:0,102:0:0:102:3659:-310.652,-30.7051,0	1/1:192:3,185:3:108:185:6625:-555.468,-46.8721,0	0/1:74:48,26:48:1709:26:932:-57.9329,0,-131.761	1/1:130:0,130:0:0:130:4649:-396.052,-39.1339,0	0/1:168:89,79:89:3196:79:2820:-193.305,0,-236.907	1/1:44:0,44:0:0:44:1568:-135.318,-13.2453,0	0/1:294:171,123:171:6105:123:4366:-284.488,0,-460.411	1/1:230:0,229:0:0:229:8200:-705.386,-68.9359,0	0/1:41:26,15:26:936:15:536:-33.85,0,-72.1499	1/1:309:0,308:0:0:308:11020:-939.855,-92.7172,0	1/1:114:2,112:2:72:112:4009:-338.578,-27.4807,0	0/1:147:70,77:70:2478:77:2764:-190.889,0,-178.963	0/1:8:5,3:5:180:3:108:-5.24654,0,-14.1438	1/1:10:0,10:0:0:10:360:-30.6207,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.3876,-0.30103,0	1/1:3:0,3:0:0:3:108:-9.48528,-0.90309,0	0/1:17:14,3:14:504:3:108:-4.36777,0,-40.2815	1/1:156:0,156:0:0:156:5575:-471.833,-46.9607,0	0/1:126:69,57:69:2468:57:2015:-135.074,0,-184.088	0/1:73:45,28:45:1620:28:1000:-63.0988,0,-124.074	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	0/1:164:100,64:100:3592:64:2292:-145.688,0,-274.068	0/1:29:19,10:19:684:10:356:-21.6011,0,-53.0705	1/1:145:0,145:0:0:145:5203:-446.113,-43.6494,0	1/1:76:0,76:0:0:76:2720:-230.2,-22.8783,0	1/1:57:0,57:0:0:57:2048:-173.603,-17.1587,0	1/1:114:0,114:0:0:114:4068:-345.888,-34.3174,0	1/1:96:0,96:0:0:96:3436:-287.007,-28.8989,0	0/1:194:93,101:93:3348:101:3612:-247.019,0,-241.488	1/1:102:1,101:1:36:101:3624:-305.943,-27.1136,0	1/1:153:0,153:0:0:153:5480:-466.933,-46.0576,0	1/1:97:0,97:0:0:97:3476:-293.069,-29.1999,0	0/1:8:3,5:3:108:5:180:-13.3403,0,-7.66693	0/1:142:92,50:92:3274:50:1800:-109.795,0,-251.569	0/1:71:39,32:39:1381:32:1148:-74.5239,0,-103.128	0/1:11:3,8:3:108:8:288:-20.6618,0,-6.76384	0/1:120:76,44:76:2709:44:1584:-98.9872,0,-207.861	1/1:55:0,55:0:0:55:1956:-163.632,-16.5567,0	1/1:12:0,12:0:0:12:417:-36.1088,-3.61236,0	1/1:19:0,19:0:0:19:676:-58.268,-5.71957,0	1/1:107:0,107:0:0:107:3830:-324.842,-32.2102,0	1/1:79:0,79:0:0:79:2840:-242.646,-23.7814,0	1/1:15:0,15:0:0:15:536:-46.1258,-4.51545,0	0/1:206:96,110:96:3444:110:3929:-270.786,0,-248.047	1/1:239:2,237:2:72:237:8491:-713.042,-65.1094,0	1/1:61:0,61:0:0:61:2184:-187.277,-18.3628,0	1/1:74:0,74:0:0:74:2648:-224.05,-22.2762,0	1/1:141:0,141:0:0:141:5039:-428.527,-42.4452,0	1/1:89:0,89:0:0:89:3196:-274.333,-26.7917,0	1/1:35:0,35:0:0:35:1260:-108.543,-10.5361,0	1/1:78:0,78:0:0:78:2780:-232.907,-23.4803,0	1/1:76:0,76:0:0:76:2728:-230.625,-22.8783,0	0/1:8:4,4:4:140:4:140:-9.97921,0,-10.5363	1/1:84:0,84:0:0:84:3012:-255.131,-25.2865,0	0/1:94:35,59:35:1256:59:2104:-147.533,0,-84.9669	1/1:253:0,253:0:0:253:9061:-774.898,-76.1606,0	1/1:132:0,132:0:0:132:4727:-398.703,-39.736,0	1/1:99:0,99:0:0:99:3533:-297.671,-29.802,0	1/1:100:0,100:0:0:100:3596:-298.874,-30.103,0	1/1:11:0,11:0:0:11:392:-33.4352,-3.31133,0	1/1:91:0,91:0:0:91:3243:-277.956,-27.3937,0	0/1:125:74,51:74:2648:51:1828:-116.041,0,-200.224	1/1:217:0,217:0:0:217:7760:-661.358,-65.3235,0	1/1:89:0,89:0:0:89:3188:-273.353,-26.7917,0	1/1:58:0,58:0:0:58:2084:-173.705,-17.4597,0	1/1:59:0,59:0:0:59:2112:-176.185,-17.7608,0	1/1:126:0,126:0:0:126:4520:-384.245,-37.9298,0	1/1:21:0,21:0:0:21:756:-63.775,-6.32163,0	0/1:81:57,24:57:2044:24:860:-48.7898,0,-158.256	1/1:79:0,79:0:0:79:2832:-236.745,-23.7814,0	0/1:47:24,23:24:860:23:824:-56.9817,0,-63.1237	0/1:82:50,32:50:1792:32:1152:-73.0439,0,-136.741	0/1:59:45,14:45:1601:14:504:-25.719,0,-126.097	1/1:134:1,133:1:36:133:4713:-396.648,-36.7397,0	1/1:109:0,109:0:0:109:3903:-330.852,-32.8123,0
chr08	31921847	.	A	T	23483	PASS	AB=0.559866;ABP=77.6294;AC=25;AF=0.132979;AN=188;AO=1368;CIGAR=1X;DP=8811;DPB=8811;DPRA=1.08674;EPP=2973.58;EPPR=16156.6;GTI=2;LEN=1;MEANALT=1;MQM=58.6864;MQMR=38.5198;NS=94;NUMALT=1;ODDS=1.0012;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49076;QR=266343;RO=7443;RPL=1368;RPP=2973.58;RPPR=15966.1;RPR=0;RUN=1;SAF=0;SAP=2973.58;SAR=1368;SRF=24;SRP=15957.5;SRR=7419;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1688:0:0:0,-14.1484,-142.119	0/0:118:118,0:118:4240:0:0:0,-35.5215,-355.312	0/0:101:101,0:101:3612:0:0:0,-30.404,-301.451	0/0:190:190,0:190:6764:0:0:0,-57.1957,-574.162	0/0:39:39,0:39:1396:0:0:0,-11.7402,-120.428	0/0:73:72,1:72:2588:1:36:0,-18.8516,-215.883	0/0:129:129,0:129:4584:0:0:0,-38.8329,-385.718	0/0:131:131,0:131:4700:0:0:0,-39.4349,-393.293	0/0:107:105,2:105:3752:2:68:0,-25.7525,-305.273	0/0:61:60,1:60:2152:1:36:0,-15.1752,-180.771	0/0:59:57,2:57:2048:2:72:0,-11.7043,-169.255	0/0:69:68,1:68:2436:1:36:0,-17.6474,-201.441	0/0:70:70,0:70:2516:0:0:0,-21.0721,-208.778	0/0:86:86,0:86:3036:0:0:0,-25.8886,-260.473	0/0:64:63,1:63:2260:1:36:0,-16.0783,-189.67	0/0:52:52,0:52:1860:0:0:0,-15.6536,-159.34	0/0:49:48,1:48:1728:1:36:0,-11.6268,-142.922	0/0:59:59,0:59:2120:0:0:0,-17.7608,-178.419	0/0:24:24,0:24:856:0:0:0,-7.22472,-71.0248	0/0:103:103,0:103:3692:0:0:0,-31.0061,-313.955	0/0:188:185,3:185:6604:3:108:0,-46.5185,-555.685	0/1:77:27,50:27:952:50:1773:-136.615,0,-59.0173	0/0:132:132,0:132:4720:0:0:0,-39.736,-401.816	0/1:168:80,88:80:2868:88:3168:-234.34,0,-197.087	0/0:45:45,0:45:1616:0:0:0,-13.5463,-139.289	0/1:295:125,170:125:4472:170:6101:-459.752,0,-292.015	0/0:231:231,0:231:8280:0:0:0,-69.5379,-711.059	0/1:41:15,26:15:540:26:936:-72.1499,0,-34.1386	0/0:312:312,0:312:11192:0:0:0,-93.9214,-954.192	0/0:115:113,2:113:4032:2:72:0,-27.7817,-340.791	0/1:147:77,70:77:2729:70:2516:-182.383,0,-187.837	0/1:8:3,5:3:108:5:180:-14.1438,0,-5.24654	0/0:10:10,0:10:360:0:0:0,-3.0103,-30.6207	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.3876	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.48528	0/1:18:4,14:4:140:14:504:-39.9805,0,-6.85208	0/0:159:159,0:159:5678:0:0:0,-47.8638,-480.706	0/1:128:59,69:59:2112:69:2480:-184.569,0,-142.164	0/1:73:28,45:28:1004:45:1616:-123.717,0,-63.3562	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.45449	0/1:162:64,98:64:2288:98:3516:-267.835,0,-146.242	0/1:31:10,21:10:356:21:752:-58.584,0,-20.9991	0/0:147:147,0:147:5276:0:0:0,-44.2514,-452.39	0/0:76:75,1:75:2691:1:36:0,-19.6907,-224.876	0/0:59:59,0:59:2105:0:0:0,-17.7608,-178.553	0/0:114:114,0:114:4092:0:0:0,-34.3174,-347.735	0/0:97:96,1:96:3440:1:36:0,-26.0763,-284.281	0/1:190:100,90:100:3557:90:3228:-231.899,0,-244.159	0/0:103:103,0:103:3680:0:0:0,-31.0061,-314.926	0/0:151:151,0:151:5412:0:0:0,-45.4555,-460.99	0/0:91:91,0:91:3256:0:0:0,-27.3937,-275.88	0/1:8:5,3:5:180:3:108:-7.66693,0,-13.3403	0/1:141:51,90:51:1832:90:3228:-247.797,0,-111.973	0/1:71:32,39:32:1152:39:1400:-104.841,0,-74.7972	0/1:11:8,3:8:288:3:104:-6.39148,0,-20.6618	0/1:121:46,75:46:1648:75:2688:-205.655,0,-103.269	0/0:55:55,0:55:1960:0:0:0,-16.5566,-163.891	0/0:12:12,0:12:428:0:0:0,-3.61236,-37.0424	0/0:19:19,0:19:680:0:0:0,-5.71957,-58.5756	0/0:108:108,0:108:3849:0:0:0,-32.5112,-327.618	0/0:80:79,1:79:2820:1:36:0,-20.8948,-238.642	0/0:15:15,0:15:536:0:0:0,-4.51545,-46.1258	0/1:208:109,99:109:3896:99:3549:-255.962,0,-267.572	0/0:235:234,1:234:8364:1:36:0,-67.1438,-707.791	0/0:59:59,0:59:2096:0:0:0,-17.7608,-180.322	0/0:75:75,0:75:2680:0:0:0,-22.5772,-227.385	0/0:145:145,0:145:5188:0:0:0,-43.6493,-439.474	0/0:91:91,0:91:3260:0:0:0,-27.3937,-279.95	0/0:36:36,0:36:1296:0:0:0,-10.8371,-111.464	0/0:76:76,0:76:2716:0:0:0,-22.8783,-227.937	0/0:81:79,2:79:2836:2:72:0,-18.3269,-234.38	0/1:8:4,4:4:140:4:144:-10.9054,0,-9.97921	0/0:84:84,0:84:3020:0:0:0,-25.2865,-255.438	0/1:95:60,35:60:2144:35:1260:-85.0261,0,-150.755	0/0:258:258,0:258:9232:0:0:0,-77.6657,-789.901	0/0:132:132,0:132:4728:0:0:0,-39.736,-398.683	0/0:100:100,0:100:3580:0:0:0,-30.103,-301.208	0/0:99:98,1:98:3516:1:36:0,-26.6783,-289.677	0/0:11:11,0:11:388:0:0:0,-3.31133,-33.1763	0/0:91:91,0:91:3252:0:0:0,-27.3937,-278.668	0/1:121:50,71:50:1792:71:2552:-192.813,0,-115.455	0/0:215:215,0:215:7704:0:0:0,-64.7214,-655.927	0/0:89:89,0:89:3196:0:0:0,-26.7917,-273.771	0/0:58:58,0:58:2088:0:0:0,-17.4597,-173.978	0/0:59:59,0:59:2103:0:0:0,-17.7608,-175.413	0/0:127:126,1:126:4524:1:36:0,-35.0432,-381.699	0/0:21:21,0:21:752:0:0:0,-6.32163,-63.5173	0/1:84:26,58:26:928:58:2084:-160.951,0,-52.8105	0/0:81:81,0:81:2904:0:0:0,-24.3834,-243.277	0/1:46:22,24:22:775:24:845:-62.07,0,-53.6194	0/1:85:34,51:34:1220:51:1832:-139.436,0,-78.0719	0/1:60:16,44:16:568:44:1580:-123.911,0,-31.032	0/0:127:124,3:124:4436:3:108:0,-29.2508,-366.885	0/0:109:108,1:108:3880:1:36:0,-29.6246,-325.559
chr08	31938479	.	GAATC	GAATT	188996	PASS	AB=0.491939;ABP=4.44571;AC=162;AF=0.861702;AN=188;AO=8563;CIGAR=4M1X;DP=9984;DPB=9985.4;DPRA=0;EPP=18588.6;EPPR=2797.7;GTI=1;LEN=1;MEANALT=1.98936;MQM=59.9532;MQMR=59.9953;NS=94;NUMALT=1;ODDS=1.47374;PAIRED=0;PAIREDR=0;PAO=1.5;PQA=34;PQR=36;PRO=1;QA=304982;QR=43645;RO=1287;RPL=1;RPP=18588.6;RPPR=2797.7;RPR=8562;RUN=1;SAF=2;SAP=18580;SAR=8561;SRF=0;SRP=2797.7;SRR=1287;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,28:0:0:28:978:-87.9907,-8.42884,0	1/1:193:0,192:0:0:192:6845:-615.916,-57.7978,0	1/1:91:0,87:0:0:87:3099:-278.859,-26.1896,0	1/1:258:0,256:0:0:256:9139:-822.19,-77.0637,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:107:1,106:1:29:106:3790:-338.398,-29.3106,0	1/1:124:0,122:0:0:122:4356:-391.923,-36.7257,0	1/1:175:0,171:0:0:171:6106:-549.347,-51.4761,0	1/1:91:0,88:0:0:88:3144:-282.92,-26.4906,0	1/1:117:0,115:0:0:115:4075:-366.644,-34.6185,0	1/1:61:0,60:0:0:60:2144:-192.936,-18.0618,0	1/1:102:0,102:0:0:102:3640:-327.805,-30.7051,0	1/1:86:0,85:0:0:85:3023:-272.06,-25.5876,0	1/1:108:0,101:0:0:101:3620:-325.733,-30.404,0	1/1:110:0,110:0:0:110:3934:-354.251,-33.1133,0	1/1:67:0,65:0:0:65:2332:-209.843,-19.567,0	1/1:84:0,84:0:0:84:2982:-268.612,-25.2865,0	1/1:91:0,90:0:0:90:3168:-285.045,-27.0927,0	1/1:54:0,54:0:0:54:1913:-172.445,-16.2556,0	1/1:236:0,230:0:0:230:8215:-739.11,-69.2369,0	1/1:128:0,128:0:0:128:4571:-411.556,-38.5318,0	0/1:113:76,37:76:2621:37:1320:-85.0856,0,-202.124	1/1:111:0,110:0:0:110:3922:-352.902,-33.1133,0	0/1:118:57,61:57:1959:61:2172:-160.22,0,-141.062	1/1:43:0,43:0:0:43:1534:-138.35,-12.9443,0	0/1:329:154,172:154:5202:172:6168:-456.803,0,-369.931	1/1:167:0,165:0:0:165:5898:-530.593,-49.67,0	0/1:42:22,20:22:724:20:707:-51.3113,0,-52.824	1/1:179:0,178:0:0:178:6371:-573.229,-53.5833,0	1/1:142:5,137:5:167:137:4903:-425.635,-27.3879,0	0/1:162:78,82:78:2634:82:2940:-216.114,0,-188.906	0/1:3:1,2:1:35:2:72:-5.93363,0,-2.59554	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:7:3,4:3:105:4:140:-10.8374,0,-7.68888	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:242:0,236:0:0:236:8345:-750.743,-71.0431,0	0/1:184:82,99:82:2738:99:3524:-262.207,0,-191.873	0/1:78:36,42:36:1221:42:1491:-111.003,0,-86.7091	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:161:77,81:77:2595:81:2891:-212.577,0,-185.953	0/1:32:16,16:16:544:16:553:-40.461,0,-39.6494	1/1:137:0,133:0:0:133:4756:-427.955,-40.037,0	1/1:121:0,120:0:0:120:4280:-385.047,-36.1236,0	1/1:75:0,74:0:0:74:2644:-238.005,-22.2762,0	1/1:79:0,77:0:0:77:2741:-246.682,-23.1793,0	1/1:119:0,116:0:0:116:4149:-373.32,-34.9195,0	0/1:213:124,89:124:4222:89:3162:-220.686,0,-316.054	1/1:124:0,120:0:0:120:4276:-384.749,-36.1236,0	1/1:210:0,209:0:0:209:7455:-670.686,-62.9153,0	1/1:136:0,136:0:0:136:4805:-432.605,-40.9401,0	0/1:3:2,1:2:56:1:36:-2.69518,0,-4.41626	0/1:110:56,54:56:1926:54:1928:-140.683,0,-140.501	0/1:70:35,35:35:1180:35:1256:-92.2732,0,-85.4255	0/1:6:2,3:2:72:3:108:-8.27008,0,-5.02498	0/1:137:76,59:76:2538:59:2116:-149.821,0,-187.785	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:74:0,74:0:0:74:2639:-237.745,-22.2762,0	1/1:138:0,135:0:0:135:4797:-431.623,-40.6391,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:265:122,142:122:4182:142:5028:-372.827,0,-296.744	1/1:229:0,226:0:0:226:8063:-725.381,-68.0328,0	1/1:93:2,91:2:71:91:3236:-284.714,-21.2537,0	1/1:104:0,93:0:0:93:3265:-293.768,-27.9958,0	1/1:184:3,180:3:92:180:6385:-566.131,-46.8054,0	1/1:104:1,102:1:36:102:3642:-324.437,-27.7127,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:86:0,84:0:0:84:2974:-267.544,-25.2865,0	0/1:18:10,8:10:347:8:284:-20.4848,0,-26.1459	1/1:63:0,63:0:0:63:2227:-200.694,-18.9649,0	0/1:77:35,41:35:1180:41:1472:-109.655,0,-83.3755	1/1:158:0,155:0:0:155:5544:-498.823,-46.6597,0	1/1:201:0,201:0:0:201:7208:-648.773,-60.507,0	1/1:101:0,99:0:0:99:3519:-316.632,-29.802,0	1/1:146:1,143:1:35:143:5071:-453.072,-40.1821,0	1/1:13:0,11:0:0:11:396:-35.6526,-3.31133,0	1/1:129:0,127:0:0:127:4544:-408.816,-38.2308,0	0/1:86:48,38:48:1618:38:1368:-97.5322,0,-120.014	1/1:157:0,154:0:0:154:5491:-494.031,-46.3586,0	1/1:147:0,144:0:0:144:5067:-455.856,-43.3483,0	1/1:78:0,77:0:0:77:2744:-246.952,-23.1793,0	1/1:118:0,117:0:0:117:4151:-373.485,-35.2205,0	1/1:238:0,233:0:0:233:8284:-745.272,-70.14,0	1/1:75:0,75:0:0:75:2627:-236.678,-22.5773,0	0/1:101:44,57:44:1505:57:2008:-150.562,0,-105.338	1/1:97:0,96:0:0:96:3373:-303.484,-28.8989,0	0/1:33:15,17:15:515:17:612:-45.5433,0,-36.8054	0/1:97:41,56:41:1377:56:1986:-149.46,0,-94.6685	0/1:96:61,34:61:2083:34:1212:-80.4287,0,-158.783	1/1:131:0,128:0:0:128:4563:-410.575,-38.5318,0	1/1:138:0,134:0:0:134:4753:-427.647,-40.338,0
chr08	32147348	.	TT	TC,CC	268932	PASS	AB=0.626923,0.367308;ABP=221.293,241.588;AC=163,23;AF=0.876344,0.123656;AN=186;AO=8947,584;CIGAR=1M1X,2X;DP=9553;DPB=9554;DPRA=0,0.846646;EPP=246.2,324.403;EPPR=6.91895;GTI=4;LEN=1,2;MEANALT=1.50538,2.25;MQM=59.9889,59.9932;MQMR=60;NS=93;NUMALT=2;ODDS=6.96236;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,72;PQR=0;PRO=0;QA=316798,20268;QR=178;RO=5;RPL=8895,581;RPP=18982.1,1245.23;RPPR=13.8677;RPR=52,3;RUN=1,1;SAF=4924,142;SAP=200.038,337.655;SAR=4023,442;SRF=1;SRP=6.91895;SRR=4;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/1:124:0,123,0:0:0:123,0:4403,0:-396.191,-37.0267,0,-396.191,-37.0267,-396.191	1/1:92:0,92,0:0:0:92,0:3253,0:-292.991,-27.6948,0,-292.991,-27.6948,-292.991	1/1:131:0,131,0:0:0:131,0:4679,0:-421.272,-39.4349,0,-421.272,-39.4349,-421.272	1/1:54:0,54,0:0:0:54,0:1902,0:-171.457,-16.2556,0,-171.457,-16.2556,-171.457	1/1:59:0,59,0:0:0:59,0:2083,0:-187.74,-17.7608,0,-187.74,-17.7608,-187.74	1/1:66:0,66,0:0:0:66,0:2339,0:-210.77,-19.868,0,-210.77,-19.868,-210.77	1/1:147:0,147,0:0:0:147,0:5170,0:-465.444,-44.2514,0,-465.444,-44.2514,-465.444	1/1:138:0,138,0:0:0:138,0:4885,0:-439.801,-41.5421,0,-439.801,-41.5421,-439.801	1/1:102:0,102,0:0:0:102,0:3618,0:-325.826,-30.7051,0,-325.826,-30.7051,-325.826	1/1:139:0,139,0:0:0:139,0:4933,0:-444.123,-41.8432,0,-444.123,-41.8432,-444.123	1/1:206:0,204,1:0:0:204,1:7218,36:-649.323,-61.4101,0,-646.386,-58.4727,-646.084	1/1:168:0,168,0:0:0:168,0:5965,0:-536.959,-50.573,0,-536.959,-50.573,-536.959	1/1:166:0,166,0:0:0:166,0:5866,0:-528.055,-49.971,0,-528.055,-49.971,-528.055	1/1:178:0,178,0:0:0:178,0:6341,0:-570.783,-53.5833,0,-570.783,-53.5833,-570.783	1/1:134:0,132,0:0:0:132,0:4653,0:-418.683,-39.736,0,-418.683,-39.736,-418.683	1/1:152:0,152,0:0:0:152,0:5373,0:-483.704,-45.7566,0,-483.704,-45.7566,-483.704	1/1:150:1,148,0:1:36:148,0:5258,0:-469.73,-41.615,0,-470.031,-44.5524,-472.968	1/1:115:1,114,0:1:34:114,0:4048,0:-361.109,-31.2195,0,-361.41,-34.3174,-364.168	1/1:109:0,109,0:0:0:109,0:3809,0:-343.012,-32.8123,0,-343.012,-32.8123,-343.012	1/1:185:0,184,1:0:0:184,1:6508,36:-585.452,-55.3895,0,-582.515,-52.0923,-582.214	1/2:30:0,14,16:0:0:14,16:504,561:-87.1303,-46.0021,-41.7877,-41.4837,0,-36.6672	1/1:69:0,69,0:0:0:69,0:2457,0:-221.384,-20.7711,0,-221.384,-20.7711,-221.384	1/2:47:0,40,6:0:0:40,6:1419,212:-132.998,-17.3712,-5.33004,-115.732,0,-113.926	1/1:66:0,66,0:0:0:66,0:2336,0:-210.498,-19.868,0,-210.498,-19.868,-210.498	1/2:199:0,106,92:0:0:106,92:3730,3188:-562.773,-259.128,-227.219,-303.674,0,-275.979	1/1:192:0,191,1:0:0:191,1:6728,25:-605.353,-57.4967,0,-603.405,-55.2979,-603.103	1/2:60:0,46,14:0:0:46,14:1613,462:-168.951,-37.6792,-23.8318,-131.607,0,-127.393	1/1:151:0,150,1:0:0:150,1:5301,36:-476.868,-45.1545,0,-473.93,-41.8573,-473.629	1/1:78:0,75,2:0:0:75,2:2647,72:-238.152,-22.5773,0,-232.277,-16.6292,-231.675	1/2:63:0,32,30:0:0:32,30:1144,1064:-179.962,-86.6812,-77.0483,-93.2768,0,-84.2459	1/2:9:0,7,2:0:0:7,2:252,72:-26.7966,-6.23466,-4.12745,-20.9217,0,-20.3197	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:4:0,4,0:0:0:4,0:136,0:-12.5755,-1.20412,0,-12.5755,-1.20412,-12.5755	1/2:15:0,8,7:0:0:8,7:271,241:-41.8871,-19.9175,-17.5092,-22.3112,0,-20.204	1/1:383:0,383,0:0:0:383,0:13617,0:-1225.33,-115.294,0,-1225.33,-115.294,-1225.33	1/2:72:0,43,29:0:0:43,29:1501,1024:-205.828,-83.7426,-70.7984,-122.437,0,-113.707	1/2:97:0,70,27:0:0:70,27:2473,916:-276.027,-74.6186,-53.5465,-201.751,0,-193.623	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:87:0,63,24:0:0:63,24:2195,832:-246.112,-67.6123,-48.6474,-178.488,0,-171.263	1/2:32:0,21,11:0:0:21,11:748,394:-93.4565,-32.4902,-26.1685,-61.3237,0,-58.0123	1/1:97:0,96,1:0:0:96,1:3424,36:-308.015,-28.8989,0,-305.078,-25.6016,-304.777	1/1:173:0,173,0:0:0:173,0:6105,0:-549.558,-52.0782,0,-549.558,-52.0782,-549.558	1/1:136:0,136,0:0:0:136,0:4807,0:-432.789,-40.9401,0,-432.789,-40.9401,-432.789	1/1:85:0,85,0:0:0:85,0:3005,0:-270.682,-25.5876,0,-270.682,-25.5876,-270.682	1/1:84:0,84,0:0:0:84,0:2992,0:-269.51,-25.2865,0,-269.51,-25.2865,-269.51	1/2:103:0,66,36:0:0:66,36:2315,1258:-290.84,-102.449,-82.581,-188.507,0,-177.67	1/1:51:0,51,0:0:0:51,0:1796,0:-161.919,-15.3525,0,-161.919,-15.3525,-161.919	1/1:134:0,134,0:0:0:134,0:4749,0:-427.57,-40.338,0,-427.57,-40.338,-427.57	1/1:101:0,99,0:0:0:99,0:3462,0:-311.49,-29.802,0,-311.49,-29.802,-311.49	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:65:0,51,14:0:0:51,14:1786,500:-186.435,-41.122,-25.7694,-145.669,0,-141.454	1/2:21:0,3,18:0:0:3,18:108,606:-58.2527,-49.4372,-48.5341,-9.17208,0,-3.75354	1/2:4:0,1,3:0:0:1,3:32,106:-11.556,-8.98601,-8.68498,-2.89828,0,-1.99519	1/2:92:2,62,28:2:72:62,28:2199,997:-253.935,-75.3813,-62.5926,-173.277,0,-170.723	1/1:44:0,44,0:0:0:44,0:1559,0:-140.601,-13.2453,0,-140.601,-13.2453,-140.601	1/1:7:0,7,0:0:0:7,0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chr08	32227134	.	G	A	72617	PASS	AB=0.698666;ABP=1056.48;AC=135;AF=0.718085;AN=188;AO=3556;CIGAR=1X;DP=4490;DPB=4490;DPRA=0;EPP=7629.52;EPPR=2031.17;GTI=10;LEN=1;MEANALT=1;MQM=59.7627;MQMR=31.1221;NS=94;NUMALT=1;ODDS=0.652843;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126675;QR=33349;RO=934;RPL=11;RPP=7629.52;RPPR=2031.17;RPR=3545;RUN=1;SAF=3556;SAP=7724.77;SAR=0;SRF=934;SRP=2031.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:4,12:4:144:12:424:-33.4869,0,-6.48531	0/1:44:21,23:21:756:23:794:-58.528,0,-44.4048	0/1:30:11,19:11:396:19:669:-51.503,0,-21.5145	0/1:93:32,61:32:1137:61:2188:-169.174,0,-57.5689	1/1:23:2,21:2:72:21:741:-61.4679,-1.40844,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:56:20,36:20:720:36:1271:-97.8306,0,-37.0939	0/1:59:22,37:22:784:37:1313:-100.709,0,-42.8058	1/1:22:2,20:2:72:20:712:-58.603,-0.819039,0	0/1:65:25,40:25:892:40:1408:-107.447,0,-47.6693	1/1:56:0,56:0:0:56:2012:-181.33,-16.8577,0	1/1:44:0,44:0:0:44:1577:-142.209,-13.2453,0	1/1:25:0,25:0:0:25:896:-80.9522,-7.52575,0	0/1:51:11,40:11:387:40:1436:-114.184,0,-14.2689	1/1:26:0,26:0:0:26:927:-83.7172,-7.82678,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:60:19,41:19:675:41:1464:-113.994,0,-34.2835	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:28:5,23:5:180:23:824:-66.0545,0,-5.55415	0/1:98:17,81:17:608:81:2853:-227.436,0,-16.4682	0/1:77:21,56:21:752:56:1974:-154.752,0,-33.3333	0/1:82:32,50:32:1144:50:1788:-136.465,0,-59.5191	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	0/1:42:15,27:15:540:27:968:-74.7941,0,-27.9619	1/1:13:0,13:0:0:13:460:-41.7068,-3.91339,0	0/1:171:41,130:41:1472:130:4619:-363.106,0,-56.0159	1/1:79:0,79:0:0:79:2810:-253.137,-23.7814,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:77:0,77:0:0:77:2764:-248.924,-23.1793,0	0/1:90:27,63:27:972:63:2245:-175.111,0,-45.6376	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:12:0,12:0:0:12:428:-38.8575,-3.61236,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-3.25519	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:168:31,137:31:1112:137:4908:-391.289,0,-31.2766	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:49:0,49:0:0:49:1729:-155.835,-14.7505,0	0/1:13:2,11:2:72:11:392:-31.6781,0,-1.75004	0/1:72:23,49:23:809:49:1737:-134.938,0,-40.9926	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:48:0,48:0:0:48:1702:-153.462,-14.4494,0	1/1:31:2,29:2:72:29:1044:-88.7596,-3.81668,0	0/1:55:14,41:14:496:41:1461:-115.189,0,-20.504	0/1:27:9,18:9:324:18:648:-50.5241,0,-15.7459	0/1:54:22,32:22:792:32:1152:-87.7121,0,-44.5297	1/1:79:0,79:0:0:79:2824:-254.339,-23.7814,0	0/1:92:25,67:25:900:67:2370:-185.858,0,-39.8874	0/1:78:36,42:36:1288:42:1498:-111.598,0,-71.7104	0/1:88:21,67:21:756:67:2381:-187.859,0,-28.6523	0/1:9:3,6:3:108:6:216:-17.0812,0,-5.0701	0/1:84:16,68:16:557:68:2391:-190.157,0,-18.196	0/1:30:4,26:4:144:26:936:-75.5286,0,-1.78147	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:67:17,50:17:608:50:1792:-140.962,0,-25.7464	1/1:14:0,14:0:0:14:504:-45.6957,-4.21442,0	0/1:23:6,17:6:216:17:586:-46.1374,0,-8.55638	0/1:16:5,11:5:180:11:396:-31.1663,0,-8.53624	1/1:50:0,50:0:0:50:1762:-158.83,-15.0515,0	0/1:118:34,84:34:1224:84:3001:-234.796,0,-56.3874	0/1:6:2,4:2:72:4:144:-11.5074,0,-3.85725	1/1:100:0,100:0:0:100:3505:-315.632,-30.103,0	0/1:77:31,46:31:1093:46:1648:-125.429,0,-58.9061	0/1:52:25,27:25:896:27:972:-72.1428,0,-51.0773	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:65:24,41:24:860:41:1472:-113.209,0,-45.1229	0/1:72:25,47:25:885:47:1665:-128.423,0,-44.6113	0/1:41:7,34:7:252:34:1220:-97.763,0,-6.80204	1/1:24:1,23:1:36:23:824:-71.501,-4.24397,0	0/1:89:29,60:29:1027:60:2148:-166.796,0,-49.1235	0/1:27:12,15:12:428:15:534:-40.2649,0,-24.2402	0/1:54:11,43:11:392:43:1533:-121.961,0,-14.2113	0/1:26:9,17:9:324:17:612:-47.5867,0,-17.4432	0/1:61:8,53:8:288:53:1896:-152.554,0,-3.39666	1/1:62:0,62:0:0:62:2228:-200.678,-18.6639,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:42:0,42:0:0:42:1493:-134.547,-12.6433,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-1.54939	0/1:60:21,39:21:756:39:1390:-107.336,0,-38.7728	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	1/1:70:0,70:0:0:70:2478:-223.214,-21.0721,0	0/1:92:27,65:27:972:65:2310:-180.387,0,-45.2187	0/1:32:12,20:12:432:20:720:-55.4958,0,-22.8572	0/1:59:18,41:18:640:41:1468:-114.653,0,-30.9369	1/1:62:1,61:1:36:61:2188:-194.205,-15.6831,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	0/1:40:11,29:11:377:29:1044:-82.2336,0,-17.5862	0/1:33:10,23:10:360:23:824:-64.5493,0,-17.9834	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:71:36,35:36:1254:35:1247:-91.1321,0,-73.8066	0/1:47:14,33:14:500:33:1160:-90.5558,0,-24.1146	1/1:19:0,19:0:0:19:680:-61.5148,-5.71957,0	1/1:28:0,28:0:0:28:978:-88.3285,-8.42884,0
chr08	32227140	.	G	A	6489.77	PASS	AB=0.301415;ABP=1043.98;AC=53;AF=0.281915;AN=188;AO=924;CIGAR=1X;DP=4429;DPB=4429;DPRA=1.5927;EPP=2009.45;EPPR=5413.78;GTI=12;LEN=1;MEANALT=1.03448;MQM=31.0996;MQMR=59.801;NS=94;NUMALT=1;ODDS=1.4494;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32990;QR=125199;RO=3502;RPL=0;RPP=2009.45;RPPR=5413.78;RPR=924;RUN=1;SAF=924;SAP=2009.45;SAR=0;SRF=3502;SRP=7607.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:11,5:11:396:5:165:-8.38948,0,-31.1663	0/1:43:22,21:22:792:21:756:-44.7058,0,-58.6614	0/1:30:19,11:19:684:11:396:-21.5145,0,-52.8594	0/1:93:60,33:60:2137:33:1180:-60.8487,0,-164.598	0/0:21:19,2:19:676:2:72:0,-0.806377,-55.6527	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:54:35,19:35:1256:19:680:-34.8916,0,-97.0873	0/1:59:37,22:37:1328:22:788:-42.9464,0,-102.061	0/0:23:20,2:20:693:2:72:0,-1.16074,-56.8685	0/1:64:40,24:40:1432:24:822:-43.4991,0,-109.909	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.854	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.688	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0744	0/1:48:37,11:37:1328:11:396:-15.5593,0,-105.372	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.8887	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:60:40,20:40:1419:20:704:-36.8787,0,-109.945	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:27:22,5:22:780:5:180:-5.85518,0,-62.3952	0/1:99:82,17:82:2936:17:608:-16.1672,0,-234.595	0/1:79:57,22:57:2044:22:792:-35.6023,0,-160.45	0/1:81:49,32:49:1756:32:1152:-60.0279,0,-133.898	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:41:26,15:26:932:15:540:-28.2629,0,-71.8566	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4311	0/1:173:131,42:131:4681:42:1504:-57.9225,0,-368.08	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.64	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.204	0/1:90:63,27:63:2245:27:964:-45.3945,0,-175.111	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2178	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:8:6,2:6:216:2:72:-3.25519,0,-17.3823	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:165:136,29:136:4864:29:1040:-26.5604,0,-388.235	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:49:48,1:48:1724:1:36:0,-11.2143,-151.909	0/1:13:11,2:11:396:2:68:-1.62226,0,-32.0408	0/1:71:48,23:48:1708:23:824:-42.1273,0,-132.633	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.727	0/0:31:29,2:29:1036:2:72:0,-3.81668,-88.0387	0/1:56:42,14:42:1487:14:504:-20.447,0,-117.228	0/1:27:17,10:17:608:10:356:-18.1616,0,-46.9242	0/1:52:32,20:32:1135:20:701:-38.5992,0,-86.7821	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.933	0/1:93:67,26:67:2404:26:928:-42.0259,0,-188.621	0/1:76:41,35:41:1461:35:1248:-69.5082,0,-108.87	0/1:83:62,21:62:2196:21:752:-30.5246,0,-172.879	0/1:8:6,2:6:216:2:72:-2.67833,0,-17.3823	0/1:82:67,15:67:2412:15:536:-17.0006,0,-192.651	0/1:29:25,4:25:896:4:140:-1.95808,0,-72.2305	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:65:48,17:48:1711:17:608:-26.3295,0,-134.325	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6957	0/1:22:17,5:17:597:5:180:-6.24316,0,-47.4335	0/1:17:12,5:12:432:5:180:-8.23521,0,-34.1037	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.892	0/1:117:83,33:83:2976:33:1184:-53.4277,0,-232.635	0/1:6:4,2:4:144:2:72:-3.85725,0,-11.5074	0/0:97:96,0:96:3436:0:0:0,-28.8989,-309.049	0/1:79:46,33:46:1648:33:1169:-63.7912,0,-124.827	0/1:51:27,24:27:964:24:848:-48.7548,0,-71.7237	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:63:41,22:41:1468:22:792:-40.3521,0,-113.451	0/1:73:47,26:47:1680:26:924:-47.4616,0,-129.474	0/1:39:32,7:32:1152:7:252:-7.4041,0,-92.2484	0/0:24:23,1:23:820:1:36:0,-4.24397,-71.1402	0/1:90:62,28:62:2220:28:1008:-46.6013,0,-172.972	0/1:25:15,10:15:517:10:356:-19.4767,0,-39.3284	0/1:52:42,10:42:1504:10:360:-12.2056,0,-119.979	0/1:25:17,8:17:608:8:284:-14.6305,0,-47.5263	0/1:60:52,8:52:1864:8:288:-3.69769,0,-149.976	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.678	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:42:42,0:42:1474:0:0:0,-12.6433,-132.924	0/1:5:4,1:4:144:1:36:-1.54939,0,-11.8085	0/1:60:40,20:40:1404:20:720:-36.0901,0,-108.593	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.187	0/1:92:65,27:65:2336:27:960:-44.7283,0,-182.729	0/1:32:21,11:21:752:11:396:-20.1746,0,-58.3733	0/1:60:42,18:42:1508:18:644:-30.7577,0,-117.95	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.4	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:36:25,11:25:900:11:396:-19.8293,0,-70.4839	0/1:33:23,10:23:824:10:345:-17.0848,0,-64.5493	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:69:34,35:34:1212:35:1256:-73.6243,0,-88.6153	0/1:48:32,16:32:1133:16:576:-29.4342,0,-87.8272	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7575	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595
chr08	32227176	.	T	C	53929.4	PASS	AB=0.589304;ABP=208.954;AC=126;AF=0.670213;AN=188;AO=2808;CIGAR=1X;DP=4038;DPB=4038;DPRA=0;EPP=6100.5;EPPR=2656.58;GTI=5;LEN=1;MEANALT=1;MQM=59.8048;MQMR=38.0463;NS=94;NUMALT=1;ODDS=0.13515;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98833;QR=43891;RO=1230;RPL=2808;RPP=6100.5;RPPR=2656.58;RPR=0;RUN=1;SAF=2808;SAP=6100.5;SAR=0;SRF=1230;SRP=2673.92;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:4,11:4:144:11:396:-31.4673,0,-6.78634	0/1:41:21,20:21:756:20:716:-52.4255,0,-45.3079	0/1:24:11,13:11:396:13:468:-35.2349,0,-23.3207	0/1:90:33,57:33:1175:57:1988:-152.097,0,-61.5287	1/1:19:2,17:2:72:17:589:-47.7895,-0.204318,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:49:20,29:20:720:29:1036:-78.8011,0,-39.2011	0/1:57:25,32:25:883:32:1136:-85.3902,0,-51.4657	1/1:24:2,22:2:72:22:772:-63.9977,-1.4211,0	0/1:65:26,39:26:932:39:1387:-105.56,0,-50.4925	1/1:45:0,45:0:0:45:1574:-141.946,-13.5464,0	1/1:40:0,40:0:0:40:1402:-126.467,-12.0412,0	1/1:21:0,21:0:0:21:756:-68.359,-6.32163,0	0/1:44:11,33:11:392:33:1154:-90.9194,0,-16.6221	1/1:23:0,23:0:0:23:786:-71.0496,-6.92369,0	1/1:31:0,31:0:0:31:1083:-97.778,-9.33193,0	0/1:55:20,35:20:707:35:1244:-95.708,0,-38.3545	1/1:30:0,30:0:0:30:1058:-95.5296,-9.0309,0	0/1:26:5,21:5:180:21:740:-59.0966,0,-6.15621	0/1:86:17,69:17:608:69:2429:-192.916,0,-20.0806	0/1:69:22,47:22:777:47:1676:-130.356,0,-37.7788	0/1:78:33,45:33:1175:45:1595:-120.323,0,-63.3951	1/1:13:0,13:0:0:13:446:-40.4664,-3.91339,0	0/1:32:22,10:22:779:10:356:-22.7483,0,-52.9145	1/1:11:0,11:0:0:11:387:-35.1373,-3.31133,0	0/1:159:90,69:90:3224:69:2387:-167.139,0,-216.391	1/1:78:0,78:0:0:78:2775:-249.99,-23.4803,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:67:0,67:0:0:67:2368:-213.307,-20.169,0	0/1:83:27,56:27:968:56:1979:-153.29,0,-48.1814	0/1:34:19,15:19:680:15:525:-37.343,0,-51.2941	0/1:12:3,9:3:99:9:320:-25.53,0,-5.62378	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:4:2,2:2:72:2:72:-5.6326,0,-4.45931	0/1:4:2,2:2:68:2:63:-4.77903,0,-5.25359	0/1:155:31,124:31:1108:124:4286:-339.266,0,-35.0861	1/1:44:1,43:1:36:43:1515:-133.044,-9.64705,0	1/1:45:0,45:0:0:45:1541:-138.923,-13.5464,0	0/1:13:2,11:2:72:11:392:-31.6781,0,-1.75004	0/1:65:47,18:47:1661:18:625:-37.0066,0,-119.44	0/1:11:5,6:5:171:6:207:-15.6556,0,-12.4141	1/1:39:0,39:0:0:39:1347:-121.521,-11.7402,0	1/1:31:2,29:2:72:29:1011:-85.7852,-3.81668,0	0/1:48:13,35:13:455:35:1223:-95.8852,0,-19.9146	0/1:21:10,11:10:360:11:379:-28.1189,0,-20.0902	0/1:45:21,24:21:756:24:852:-63.4316,0,-44.4899	0/1:62:31,31:31:1099:31:1099:-80.5051,0,-80.5532	0/1:79:25,54:25:896:54:1889:-146.504,0,-44.2375	0/1:77:35,42:35:1232:42:1488:-110.999,0,-68.2331	0/1:81:21,60:21:756:60:2120:-166.487,0,-30.7595	0/1:8:2,6:2:68:6:216:-17.3823,0,-3.12741	0/1:68:45,23:45:1616:23:811:-52.8399,0,-118.122	0/1:27:4,23:4:140:23:828:-66.7163,0,-2.56014	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:58:41,17:41:1472:17:604:-37.2309,0,-106.892	1/1:12:0,12:0:0:12:432:-39.2188,-3.61236,0	0/1:20:6,14:6:212:14:504:-39.6775,0,-9.35402	0/1:17:5,12:5:180:12:410:-32.109,0,-8.23521	1/1:39:0,39:0:0:39:1384:-124.83,-11.7402,0	0/1:113:33,80:33:1184:80:2786:-216.963,0,-55.0885	0/1:6:2,4:2:72:4:140:-11.1384,0,-3.85725	1/1:88:0,88:0:0:88:3112:-280.273,-26.4906,0	0/1:68:32,36:32:1148:36:1268:-93.9499,0,-65.2522	0/1:50:35,15:35:1260:15:536:-33.5218,0,-84.2037	1/1:22:0,22:0:0:22:765:-69.1675,-6.62266,0	0/1:59:24,35:24:860:35:1248:-94.8641,0,-46.9291	0/1:66:24,42:24:848:42:1496:-115.05,0,-44.0817	0/1:37:7,30:7:248:30:1012:-80.2414,0,-7.86406	1/1:19:1,18:1:36:18:644:-55.3098,-2.73882,0	0/1:82:26,56:26:932:56:1996:-155.23,0,-43.5334	0/1:25:18,7:18:632:7:235:-13.9522,0,-43.6886	0/1:39:11,28:11:396:28:975:-76.2765,0,-18.868	0/1:26:14,12:14:492:12:432:-31.3944,0,-32.9292	0/1:54:8,46:8:288:46:1633:-131,0,-5.50387	1/1:52:0,52:0:0:52:1846:-166.419,-15.6536,0	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	1/1:37:0,37:0:0:37:1293:-116.54,-11.1381,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-1.54939	0/1:56:21,35:21:756:35:1248:-95.7672,0,-39.9769	0/1:20:9,11:9:324:11:379:-28.42,0,-23.4853	1/1:64:0,64:0:0:64:2255:-203.144,-19.2659,0	0/1:86:26,60:26:923:60:2132:-166.24,0,-43.6297	0/1:33:12,21:12:428:21:743:-57.2593,0,-22.434	0/1:56:19,37:19:671:37:1311:-101.433,0,-34.2587	1/1:54:1,53:1:36:53:1839:-162.806,-13.2749,0	1/1:19:0,19:0:0:19:662:-59.9024,-5.71957,0	0/1:36:20,16:20:716:16:568:-40.6148,0,-48.8183	0/1:26:18,8:18:644:8:288:-18.4406,0,-45.6605	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:63:51,12:51:1812:12:410:-18.2617,0,-125.528	0/1:45:32,13:32:1152:13:447:-27.0113,0,-82.499	1/1:19:0,19:0:0:19:680:-61.5221,-5.71957,0	1/1:24:0,24:0:0:24:832:-75.195,-7.22472,0
chr08	32227289	.	ATG	CTG,CTA	101704	PASS	AB=0.525092,0.471236;ABP=7.47816,8.88151;AC=166,22;AF=0.882979,0.117021;AN=188;AO=3232,390;CIGAR=1X2M,1X1M1X;DP=3635;DPB=3635;DPRA=0,1.00906;EPP=102.081,179.423;EPPR=9.52472;GTI=1;LEN=1,3;MEANALT=1.37234,2.11538;MQM=59.1482,46.9949;MQMR=60;NS=94;NUMALT=2;ODDS=4.6624;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=115545,13662;QR=104;RO=3;RPL=1424,106;RPP=102.081,179.423;RPPR=9.52472;RPR=1808,284;RUN=1,1;SAF=0,0;SAP=7021.21,849.885;SAR=3232,390;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:1,31,0:1:34:31,0:1112,0:-96.934,-6.23405,0,-97.235,-9.33193,-99.9924	1/1:10:0,10,0:0:0:10,0:356,0:-32.3808,-3.0103,0,-32.3808,-3.0103,-32.3808	1/1:179:2,177,0:2:70:177,0:6329,0:-562.811,-47.237,0,-563.413,-53.2823,-569.109	1/1:69:0,69,0:0:0:69,0:2477,0:-223.055,-20.7711,0,-223.055,-20.7711,-223.055	1/1:44:0,43,0:0:0:43,0:1544,0:-138.803,-12.9443,0,-138.803,-12.9443,-138.803	1/1:21:0,21,0:0:0:21,0:756,0:-68.1878,-6.32163,0,-68.1878,-6.32163,-68.1878	1/1:26:0,26,0:0:0:26,0:932,0:-84.1626,-7.82678,0,-84.1626,-7.82678,-84.1626	1/1:46:0,46,0:0:0:46,0:1656,0:-149.307,-13.8474,0,-149.307,-13.8474,-149.307	1/1:46:0,46,0:0:0:46,0:1631,0:-147.004,-13.8474,0,-147.004,-13.8474,-147.004	1/1:28:0,28,0:0:0:28,0:989,0:-89.2803,-8.42884,0,-89.2803,-8.42884,-89.2803	1/1:36:0,36,0:0:0:36,0:1292,0:-116.548,-10.8371,0,-116.548,-10.8371,-116.548	1/1:31:0,31,0:0:0:31,0:1112,0:-100.39,-9.33193,0,-100.39,-9.33193,-100.39	1/1:34:0,34,0:0:0:34,0:1224,0:-110.323,-10.235,0,-110.323,-10.235,-110.323	1/1:23:0,22,0:0:0:22,0:783,0:-70.4357,-6.62266,0,-70.4357,-6.62266,-70.4357	1/1:31:0,31,0:0:0:31,0:1104,0:-99.3097,-9.33193,0,-99.3097,-9.33193,-99.3097	1/1:20:0,20,0:0:0:20,0:720,0:-65.1003,-6.0206,0,-65.1003,-6.0206,-65.1003	1/1:16:0,16,0:0:0:16,0:576,0:-52.139,-4.81648,0,-52.139,-4.81648,-52.139	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:18:0,18,0:0:0:18,0:648,0:-58.616,-5.41854,0,-58.616,-5.41854,-58.616	1/1:29:0,29,0:0:0:29,0:1036,0:-93.5218,-8.72987,0,-93.5218,-8.72987,-93.5218	1/1:73:0,73,0:0:0:73,0:2593,0:-233.534,-21.9752,0,-233.534,-21.9752,-233.534	1/1:27:0,27,0:0:0:27,0:960,0:-86.6795,-8.12781,0,-86.6795,-8.12781,-86.6795	1/1:35:0,35,0:0:0:35,0:1256,0:-113.291,-10.5361,0,-113.291,-10.5361,-113.291	1/2:22:0,13,9:0:0:13,9:464,318:-63.8073,-26.0081,-22.0947,-38.152,0,-35.4427	1/1:29:0,29,0:0:0:29,0:1036,0:-93.5539,-8.72987,0,-93.5539,-8.72987,-93.5539	1/2:60:0,26,34:0:0:26,34:936,1174:-171.55,-95.2054,-87.3786,-76.6968,0,-66.4618	1/1:75:0,75,0:0:0:75,0:2676,0:-240.962,-22.5773,0,-240.962,-22.5773,-240.962	1/2:13:0,9,4:0:0:9,4:324,140:-38.1104,-11.6654,-8.95611,-26.7966,0,-25.5925	1/1:64:0,64,0:0:0:64,0:2277,0:-205.116,-19.2659,0,-205.116,-19.2659,-205.116	1/1:42:0,41,1:0:0:41,1:1442,36:-129.388,-12.3422,0,-126.473,-9.06983,-126.172	1/2:24:0,13,11:0:0:13,11:468,367:-68.0956,-29.9079,-25.9946,-38.5324,0,-35.2211	1/2:63:0,28,35:0:0:28,35:990,1227:-179.465,-99.2376,-90.8088,-80.5769,0,-70.0408	1/1:22:0,22,0:0:0:22,0:792,0:-71.5607,-6.62266,0,-71.5607,-6.62266,-71.5607	1/2:33:0,23,10:0:0:23,10:828,323:-93.6517,-26.158,-19.2343,-67.826,0,-64.8157	1/1:98:0,97,0:0:0:97,0:3472,0:-312.025,-29.1999,0,-312.025,-29.1999,-312.025	1/2:68:0,40,28:0:0:40,28:1434,990:-195.951,-79.2578,-67.2166,-117.045,0,-108.616	1/1:83:0,83,0:0:0:83,0:2984,0:-268.78,-24.9855,0,-268.78,-24.9855,-268.78	1/1:65:0,65,0:0:0:65,0:2316,0:-208.601,-19.567,0,-208.601,-19.567,-208.601	1/1:30:0,30,0:0:0:30,0:1080,0:-97.4774,-9.0309,0,-97.4774,-9.0309,-97.4774	1/1:21:0,21,0:0:0:21,0:729,0:-65.9287,-6.32163,0,-65.9287,-6.32163,-65.9287	1/2:33:0,14,19:0:0:14,19:496,675:-94.7889,-54.456,-50.2416,-40.6848,0,-34.9653	1/2:20:0,9,11:0:0:9,11:324,392:-58.4842,-32.0681,-29.3589,-26.773,0,-23.4617	1/1:39:0,38,1:0:0:38,1:1355,36:-121.609,-11.4391,0,-118.694,-8.16674,-118.393	1/1:22:0,22,0:0:0:22,0:786,0:-70.7763,-6.62266,0,-70.7763,-6.62266,-70.7763	1/1:16:0,16,0:0:0:16,0:576,0:-52.1726,-4.81648,0,-52.1726,-4.81648,-52.1726	1/1:31:0,31,0:0:0:31,0:1112,0:-100.355,-9.33193,0,-100.355,-9.33193,-100.355	1/1:36:0,36,0:0:0:36,0:1280,0:-115.485,-10.8371,0,-115.485,-10.8371,-115.485	1/2:63:0,32,31:0:0:32,31:1129,1091:-180.566,-88.7041,-79.0712,-92.2135,0,-82.8816	1/1:34:0,34,0:0:0:34,0:1219,0:-109.989,-10.235,0,-109.989,-10.235,-109.989	1/1:38:0,38,0:0:0:38,0:1359,0:-122.569,-11.4391,0,-122.569,-11.4391,-122.569	1/1:38:0,38,0:0:0:38,0:1368,0:-123.409,-11.4391,0,-123.409,-11.4391,-123.409	1/1:44:0,44,0:0:0:44,0:1572,0:-141.753,-13.2453,0,-141.753,-13.2453,-141.753	1/2:39:0,13,26:0:0:13,26:464,923:-111.635,-73.8893,-69.976,-38.099,0,-30.2722	1/1:19:0,19,0:0:0:19,0:669,0:-60.4944,-5.71957,0,-60.4944,-5.71957,-60.4944	1/2:10:0,9,1:0:0:9,1:324,36:-29.6979,-3.25759,-0.548317,-26.7966,0,-26.4956	1/2:54:0,33,21:0:0:33,21:1180,742:-155.06,-59.0512,-49.1172,-96.3582,0,-90.0366	1/1:8:0,8,0:0:0:8,0:269,0:-24.5222,-2.40824,0,-24.5222,-2.40824,-24.5222	1/1:43:0,43,0:0:0:43,0:1536,0:-138.414,-12.9443,0,-138.414,-12.9443,-138.414	1/1:54:0,54,0:0:0:54,0:1940,0:-174.775,-16.2556,0,-174.775,-16.2556,-174.775	1/1:31:0,29,0:0:0:29,0:1025,0:-92.1812,-8.72987,0,-92.1812,-8.72987,-92.1812	1/1:37:0,37,0:0:0:37,0:1328,0:-119.78,-11.1381,0,-119.78,-11.1381,-119.78	1/1:24:0,24,0:0:0:24,0:860,0:-77.711,-7.22472,0,-77.711,-7.22472,-77.711	1/1:49:0,49,0:0:0:49,0:1756,0:-158.246,-14.7505,0,-158.246,-14.7505,-158.246	1/1:39:0,37,2:0:0:37,2:1332,69:-119.834,-11.1381,0,-114.434,-5.40301,-113.831	1/2:21:0,15,6:0:0:15,6:540,214:-61.7385,-17.6732,-13.1577,-44.4211,0,-42.6149	1/1:38:0,37,0:0:0:37,0:1324,0:-119.104,-11.1381,0,-119.104,-11.1381,-119.104	1/1:62:0,62,0:0:0:62,0:2212,0:-199.319,-18.6639,0,-199.319,-18.6639,-199.319	1/1:39:0,39,0:0:0:39,0:1400,0:-126.299,-11.7402,0,-126.299,-11.7402,-126.299	1/1:23:0,23,0:0:0:23,0:817,0:-73.8101,-6.92369,0,-73.8101,-6.92369,-73.8101	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:35:0,34,0:0:0:34,0:1224,0:-110.07,-10.235,0,-110.07,-10.235,-110.07	1/2:30:0,15,15:0:0:15,15:536,522:-86.3101,-42.6025,-38.0871,-44.0594,0,-39.5439	1/1:64:0,64,0:0:0:64,0:2277,0:-204.875,-19.2659,0,-204.875,-19.2659,-204.875	1/2:36:0,20,15:0:0:20,15:720,529:-101.276,-42.6264,-36.6058,-58.6868,0,-54.1713	1/1:75:0,74,1:0:0:74,1:2633,36:-236.347,-22.2762,0,-233.432,-19.0038,-233.131	1/1:37:0,37,0:0:0:37,0:1324,0:-119.407,-11.1381,0,-119.407,-11.1381,-119.407	1/2:67:0,36,31:0:0:36,31:1292,1059:-189.476,-84.1361,-73.299,-105.685,0,-96.3532	1/1:35:0,35,0:0:0:35,0:1248,0:-112.519,-10.5361,0,-112.519,-10.5361,-112.519	1/1:64:0,64,0:0:0:64,0:2283,0:-205.622,-19.2659,0,-205.622,-19.2659,-205.622	1/1:31:0,31,0:0:0:31,0:1116,0:-100.643,-9.33193,0,-100.643,-9.33193,-100.643	1/2:31:0,14,16:0:0:14,16:504,562:-85.8902,-44.7559,-40.5415,-41.2457,0,-36.4292	1/1:53:0,53,0:0:0:53,0:1900,0:-171.278,-15.9546,0,-171.278,-15.9546,-171.278	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1391,-9.0309,0,-97.1391,-9.0309,-97.1391	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:25:0,25,0:0:0:25,0:896,0:-80.9466,-7.52575,0,-80.9466,-7.52575,-80.9466	1/1:50:0,50,0:0:0:50,0:1776,0:-160.095,-15.0515,0,-160.095,-15.0515,-160.095	1/1:11:0,11,0:0:0:11,0:396,0:-35.9463,-3.31133,0,-35.9463,-3.31133,-35.9463	1/2:34:0,23,11:0:0:23,11:824,389:-98.2642,-31.1485,-24.2248,-67.4645,0,-64.1532	1/2:26:0,18,8:0:0:18,8:635,273:-74.0004,-22.2933,-16.8748,-52.0498,0,-49.6416	1/1:32:0,32,0:0:0:32,0:1151,0:-103.849,-9.63296,0,-103.849,-9.63296,-103.849	1/2:33:0,12,21:0:0:12,21:428,756:-95.7624,-60.8738,-57.2614,-35.2441,0,-28.9225	1/2:37:0,14,22:0:0:14,22:504,783:-104.192,-63.0649,-58.8505,-41.1238,0,-34.5012	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:38:0,38,0:0:0:38,0:1364,0:-123.047,-11.4391,0,-123.047,-11.4391,-123.047
chr08	32255071	.	ATCAAG	TTCAAG,TTCAGAG	145286	PASS	AB=0.523524,0.469632;ABP=8.62938,12.3742;AC=173,13;AF=0.930108,0.0698925;AN=186;AO=5930,561;CIGAR=1X5M,1X3M1I2M;DP=6531;DPB=6629.67;DPRA=0,1.71585;EPP=12879.8,1221.21;EPPR=20.3821;GTI=1;LEN=1,7;MEANALT=1.49462,2.61111;MQM=59.8265,56.41;MQMR=52.625;NS=93;NUMALT=2;ODDS=1.45212;PAIRED=0,0;PAIREDR=0;PAO=14,14;PQA=451,451;PQR=0;PRO=0;QA=211383,19715;QR=225;RO=8;RPL=5930,561;RPP=12879.8,1221.21;RPPR=20.3821;RPR=0,0;RUN=1,1;SAF=5930,561;SAP=12879.8,1221.21;SAR=0,0;SRF=8;SRP=20.3821;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43,0:0:0:43,0:1540,0:-138.834,-12.9443,0,-138.834,-12.9443,-138.834	1/1:135:0,133,0:0:0:133,0:4747,0:-427.126,-40.037,0,-427.126,-40.037,-427.126	1/1:121:0,121,0:0:0:121,0:4336,0:-390.357,-36.4246,0,-390.357,-36.4246,-390.357	1/1:137:0,136,0:0:0:136,0:4875,0:-438.642,-40.9401,0,-438.642,-40.9401,-438.642	1/1:58:0,58,0:0:0:58,0:2075,0:-187.014,-17.4597,0,-187.014,-17.4597,-187.014	1/1:81:0,81,0:0:0:81,0:2873,0:-258.79,-24.3834,0,-258.79,-24.3834,-258.79	1/1:70:0,70,0:0:0:70,0:2512,0:-226.307,-21.0721,0,-226.307,-21.0721,-226.307	1/1:149:0,148,0:0:0:148,0:5245,0:-471.747,-44.5524,0,-471.747,-44.5524,-471.747	1/1:111:0,111,0:0:0:111,0:3952,0:-355.797,-33.4143,0,-355.797,-33.4143,-355.797	1/1:74:0,74,0:0:0:74,0:2646,0:-238.366,-22.2762,0,-238.366,-22.2762,-238.366	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:15:0,15,0:0:0:15,0:532,0:-48.2131,-4.51545,0,-48.2131,-4.51545,-48.2131	1/1:11:0,11,0:0:0:11,0:387,0:-35.1659,-3.31133,0,-35.1659,-3.31133,-35.1659	1/1:16:0,15,0:0:0:15,0:527,0:-47.483,-4.51545,0,-47.483,-4.51545,-47.483	1/1:8:0,8,0:0:0:8,0:288,0:-26.2628,-2.40824,0,-26.2628,-2.40824,-26.2628	1/1:8:0,8,0:0:0:8,0:288,0:-26.264,-2.40824,0,-26.264,-2.40824,-26.264	1/1:7:0,7,0:0:0:7,0:244,0:-22.2994,-2.10721,0,-22.2994,-2.10721,-22.2994	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:163:0,162,0:0:0:162,0:5760,0:-518.256,-48.7669,0,-518.256,-48.7669,-518.256	1/1:112:0,112,0:0:0:112,0:3994,0:-359.579,-33.7154,0,-359.579,-33.7154,-359.579	1/1:123:0,123,0:0:0:123,0:4362,0:-392.739,-37.0267,0,-392.739,-37.0267,-392.739	1/1:116:0,116,0:0:0:116,0:4140,0:-372.782,-34.9195,0,-372.782,-34.9195,-372.782	1/2:184:0,106,78:0:0:106,78:3749,2716:-526.419,-221.107,-189.198,-305.662,0,-282.182	1/1:82:0,81,0:0:0:81,0:2916,0:-262.167,-24.3834,0,-262.167,-24.3834,-262.167	1/2:312:0,151,159:0:0:151,159:5408,5605:-896.747,-455.717,-410.262,-441.037,0,-393.173	1/1:135:1,133,0:1:24:133,0:4750,0:-425.188,-38.2283,0,-425.489,-40.037,-427.347	1/2:7:0,3,3:0:0:3,3:108,106:-17.4895,-8.66861,-7.76552,-8.85719,0,-7.9541	1/1:209:1,207,0:1:31:207,0:7368,0:-660.052,-59.8397,0,-660.353,-62.3132,-662.841	1/1:173:0,166,7:0:0:166,7:5932,232:-533.566,-49.971,0,-514.81,-30.8825,-512.703	1/2:144:1,73,70:1:32:73,70:2602,2465:-409.759,-197.966,-178.569,-209.549,0,-191.055	1/2:2:0,1,1:0:0:1,1:36,36:-5.99514,-3.04512,-2.74409,-3.29724,0,-2.99621	1/1:13:0,13,0:0:0:13,0:468,0:-42.4581,-3.91339,0,-42.4581,-3.91339,-42.4581	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:53:0,53,0:0:0:53,0:1879,0:-169.388,-15.9546,0,-169.388,-15.9546,-169.388	1/1:191:0,190,0:0:0:190,0:6748,0:-607.023,-57.1957,0,-607.023,-57.1957,-607.023	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	.:.:.:.:.:.:.:.	1/2:124:0,68,56:0:0:68,56:2414,1977:-357.909,-161.217,-140.747,-197.046,0,-180.188	1/2:4:0,3,1:0:0:3,1:108,36:-12.1079,-3.29553,-2.39244,-9.17208,0,-8.87105	1/1:151:0,151,0:0:0:151,0:5400,0:-485.955,-45.4555,0,-485.955,-45.4555,-485.955	1/1:10:0,10,0:0:0:10,0:356,0:-32.3797,-3.0103,0,-32.3797,-3.0103,-32.3797	1/1:5:0,5,0:0:0:5,0:176,0:-16.1834,-1.50515,0,-16.1834,-1.50515,-16.1834	1/1:77:0,77,0:0:0:77,0:2751,0:-247.832,-23.1793,0,-247.832,-23.1793,-247.832	1/1:125:0,125,0:0:0:125,0:4447,0:-400.337,-37.6288,0,-400.337,-37.6288,-400.337	1/2:205:0,105,97:0:0:105,97:3757,3418:-584.435,-278.073,-246.464,-306.367,0,-277.167	1/1:108:0,108,0:0:0:108,0:3863,0:-347.863,-32.5112,0,-347.863,-32.5112,-347.863	1/1:109:0,108,0:0:0:108,0:3872,0:-348.25,-32.5112,0,-348.25,-32.5112,-348.25	1/1:207:2,201,1:2:50:201,1:7175,35:-640.962,-56.6302,0,-638.718,-57.6495,-642.314	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:74:0,72,1:0:0:72,1:2541,33:-228.648,-21.6742,0,-226.086,-19.0712,-225.785	1/1:25:0,25,0:0:0:25,0:896,0:-80.9026,-7.52575,0,-80.9026,-7.52575,-80.9026	1/1:5:0,5,0:0:0:5,0:180,0:-16.5487,-1.50515,0,-16.5487,-1.50515,-16.5487	1/2:73:0,40,33:0:0:40,33:1435,1163:-212.028,-94.9861,-82.9449,-117.397,0,-107.463	1/1:52:0,52,0:0:0:52,0:1817,0:-163.806,-15.6536,0,-163.806,-15.6536,-163.806	1/1:6:0,6,0:0:0:6,0:212,0:-19.4246,-1.80618,0,-19.4246,-1.80618,-19.4246	1/1:11:0,11,0:0:0:11,0:396,0: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chr08	32680918	.	T	G	16240.6	PASS	AB=0.514737;ABP=6.59437;AC=21;AF=0.111702;AN=188;AO=994;CIGAR=1X;DP=8160;DPB=8160;DPRA=1.25434;EPP=2161.45;EPPR=14656.4;GTI=0;LEN=1;MEANALT=1.07692;MQM=57.9336;MQMR=59.0961;NS=94;NUMALT=1;ODDS=1.2411;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35233;QR=254996;RO=7162;RPL=994;RPP=2161.45;RPPR=14648;RPR=0;RUN=1;SAF=994;SAP=2161.45;SAR=0;SRF=7161;SRP=15546.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.4204	0/0:133:133,0:133:4714:0:0:0,-40.037,-423.265	0/0:105:105,0:105:3718:0:0:0,-31.6081,-333.853	0/0:150:150,0:150:5328:0:0:0,-45.1545,-479.2	0/0:48:47,0:47:1675:0:0:0,-14.1484,-150.504	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.518	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.694	0/0:146:146,0:146:5219:0:0:0,-43.9504,-469.683	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6487	0/0:127:127,0:127:4526:0:0:0,-38.2308,-407.304	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.823	0/0:72:72,0:72:2551:0:0:0,-21.6742,-229.699	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.208	0/0:103:103,0:103:3616:0:0:0,-31.0061,-325.126	0/0:52:52,0:52:1818:0:0:0,-15.6536,-163.842	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.434	0/0:101:101,0:101:3581:0:0:0,-30.404,-322.267	0/0:48:48,0:48:1708:0:0:0,-14.4494,-153.915	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.29	0/0:142:141,0:141:5024:0:0:0,-42.4452,-451.465	0/0:104:104,0:104:3687:0:0:0,-31.3071,-331.873	0/0:113:113,0:113:4047:0:0:0,-34.0164,-363.258	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:101:54,47:54:1928:47:1671:-119.678,0,-142.773	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.088	0/1:358:179,179:179:6353:179:6353:-463.526,0,-463.05	0/0:159:159,0:159:5668:0:0:0,-47.8638,-509.235	0/1:31:20,11:20:699:11:372:-24.4719,0,-53.8721	0/0:208:208,0:208:7443:0:0:0,-62.6142,-669.586	0/0:168:159,9:159:5624:9:313:0,-22.148,-475.923	0/1:71:41,29:41:1468:29:1044:-72.7979,0,-110.967	0/1:4:1,3:1:36:3:108:-8.86945,0,-2.39415	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:1,5:1:36:5:172:-13.9887,0,-1.79209	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6981	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:206:206,0:206:7272:0:0:0,-62.0122,-654.328	0/0:220:219,1:219:7837:1:36:0,-62.6283,-700.07	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.462	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:162:84,78:84:2964:78:2768:-200.485,0,-218.044	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.5816	0/0:74:74,0:74:2652:0:0:0,-22.2762,-237.9	0/0:60:60,0:60:2138:0:0:0,-18.0618,-191.649	0/0:61:61,0:61:2179:0:0:0,-18.3628,-195.47	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.04	0/0:118:118,0:118:4214:0:0:0,-35.5215,-379.216	0/1:148:68,80:68:2405:80:2860:-212.877,0,-171.607	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.1	0/0:206:206,0:206:7316:0:0:0,-62.0122,-657.793	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.824	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:123:58,65:58:2084:65:2302:-168.735,0,-150.623	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:8:4,4:4:144:4:144:-10.8363,0,-10.8593	0/1:95:35,60:35:1252:60:2131:-162.893,0,-84.3723	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.4762	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9663	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4337	0/0:70:70,0:70:2481:0:0:0,-21.0721,-223.086	0/0:171:171,0:171:6050:0:0:0,-51.4761,-544.509	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:186:186,0:186:6610:0:0:0,-55.9916,-594.035	0/0:211:207,4:207:7420:4:144:0,-50.5836,-654.675	0/1:149:85,64:85:3041:64:2261:-158.641,0,-228.979	0/0:47:46,1:46:1633:1:36:0,-10.5501,-143.57	0/0:131:131,0:131:4674:0:0:0,-39.4349,-419.865	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.682	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.23	0/0:64:64,0:64:2300:0:0:0,-19.2659,-206.633	0/0:111:111,0:111:3928:0:0:0,-33.4143,-353.652	0/1:30:11,19:11:396:19:684:-52.8309,0,-26.9518	0/0:119:119,0:119:4207:0:0:0,-35.8226,-378.501	0/1:71:37,34:37:1328:34:1189:-85.4953,0,-98.4482	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.154	0/0:113:113,0:113:4035:0:0:0,-34.0164,-363.148	0/1:128:60,68:60:2147:68:2411:-178.585,0,-154.895	0/0:160:160,0:160:5707:0:0:0,-48.1648,-513.509	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1721	0/0:99:98,1:98:3503:1:36:0,-26.2037,-311.849	0/1:84:39,45:39:1396:45:1599:-118.528,0,-100.553	0/0:126:126,0:126:4505:0:0:0,-37.9298,-405.482	0/0:111:111,0:111:3969:0:0:0,-33.4143,-356.737	0/0:69:69,0:69:2453:0:0:0,-20.7711,-220.636	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.422	0/0:132:132,0:132:4679:0:0:0,-39.736,-418.646	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4787	0/1:68:32,35:32:1143:35:1247:-91.9607,0,-82.618	0/1:50:24,26:24:847:26:911:-67.1349,0,-61.4454	0/0:37:37,0:37:1314:0:0:0,-11.1381,-118.461	0/1:129:60,69:60:2134:69:2429:-179.566,0,-153.359	0/1:69:18,51:18:639:51:1796:-140.962,0,-37.0495	0/0:90:90,0:90:3208:0:0:0,-27.0927,-288.905	0/0:97:97,0:97:3433:0:0:0,-29.1999,-308.656
chr08	32681005	.	GCA	ACT,ACA	58063.5	PASS	AB=0.478562,0.520055;ABP=8.78287,8.06205;AC=163,23;AF=0.876344,0.123656;AN=186;AO=5191,771;CIGAR=1X1M1X,1X2M;DP=5970;DPB=5970;DPRA=8.10054,1.13119;EPP=11249.1,1677.22;EPPR=0;GTI=1;LEN=3,1;MEANALT=1.3913,2.06667;MQM=20.8865,31.5746;MQMR=0;NS=93;NUMALT=2;ODDS=1.64308;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=184020,24306;QR=0;RO=0;RPL=5188,771;RPP=11249.1,1677.22;RPPR=0;RPR=3,0;RUN=1,1;SAF=0,0;SAP=11275.1,1677.22;SAR=5191,771;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1073,0:-56.5145,-9.0309,0,-56.5145,-9.0309,-56.5145	1/1:48:0,48,0:0:0:48,0:1720,0:-90.2905,-14.4494,0,-90.2905,-14.4494,-90.2905	1/1:139:0,138,0:0:0:138,0:4900,0:-259.542,-41.5421,0,-259.542,-41.5421,-259.542	1/1:143:0,143,0:0:0:143,0:5031,0:-267.731,-43.0473,0,-267.731,-43.0473,-267.731	1/1:42:0,42,0:0:0:42,0:1490,0:-79.5315,-12.6433,0,-79.5315,-12.6433,-79.5315	1/1:37:0,37,0:0:0:37,0:1324,0:-69.6643,-11.1381,0,-69.6643,-11.1381,-69.6643	1/1:53:0,53,0:0:0:53,0:1875,0:-100.373,-15.9546,0,-100.373,-15.9546,-100.373	1/1:77:0,77,0:0:0:77,0:2723,0:-144.262,-23.1793,0,-144.262,-23.1793,-144.262	1/1:77:0,77,0:0:0:77,0:2763,0:-144.777,-23.1793,0,-144.777,-23.1793,-144.777	1/1:61:0,61,0:0:0:61,0:2184,0:-114.705,-18.3628,0,-114.705,-18.3628,-114.705	1/1:46:0,46,0:0:0:46,0:1640,0:-86.507,-13.8474,0,-86.507,-13.8474,-86.507	1/1:103:0,101,1:0:0:101,1:3541,33:-189.573,-30.404,0,-187.174,-27.9589,-186.873	1/1:69:0,69,0:0:0:69,0:2469,0:-130.462,-20.7711,0,-130.462,-20.7711,-130.462	1/1:38:0,38,0:0:0:38,0:1363,0:-71.5449,-11.4391,0,-71.5449,-11.4391,-71.5449	1/1:41:0,41,0:0:0:41,0:1450,0:-77.0541,-12.3422,0,-77.0541,-12.3422,-77.0541	1/1:39:0,39,0:0:0:39,0:1385,0:-73.9297,-11.7402,0,-73.9297,-11.7402,-73.9297	1/1:33:0,33,0:0:0:33,0:1165,0:-62.0309,-9.93399,0,-62.0309,-9.93399,-62.0309	1/1:18:0,18,0:0:0:18,0:638,0:-33.9455,-5.41854,0,-33.9455,-5.41854,-33.9455	1/1:24:0,24,0:0:0:24,0:843,0:-44.9996,-7.22472,0,-44.9996,-7.22472,-44.9996	1/1:71:0,71,0:0:0:71,0:2520,0:-133.346,-21.3731,0,-133.346,-21.3731,-133.346	1/1:63:0,63,0:0:0:63,0:2247,0:-118.422,-18.9649,0,-118.422,-18.9649,-118.422	1/1:124:0,124,0:0:0:124,0:4397,0:-222.32,-37.3277,0,-222.32,-37.3277,-222.32	1/1:59:0,59,0:0:0:59,0:2096,0:-110.95,-17.7608,0,-110.95,-17.7608,-110.95	1/2:39:0,20,19:0:0:20,19:710,607:-75.4855,-44.0546,-38.034,-31.6808,0,-25.9612	1/1:65:0,65,0:0:0:65,0:2288,0:-122.356,-19.567,0,-122.356,-19.567,-122.356	1/2:158:0,71,87:0:0:71,87:2501,2535:-284.05,-178.672,-157.299,-105.605,0,-79.4155	1/1:132:0,132,0:0:0:132,0:4701,0:-249.553,-39.736,0,-249.553,-39.736,-249.553	1/2:40:0,19,21:0:0:19,21:669,668:-78.065,-48.3997,-42.6801,-29.9109,0,-23.5893	1/1:188:0,188,0:0:0:188,0:6706,0:-336.604,-56.5936,0,-336.604,-56.5936,-336.604	1/1:118:0,116,2:0:0:116,2:4123,57:-217.633,-34.9195,0,-213.646,-30.6777,-213.044	1/2:70:0,26,44:0:0:26,44:899,1404:-142.411,-101.489,-93.6617,-41.1611,0,-27.9158	2/2:8:0,0,8:0:0:0,8:0,256:-21.1635,-21.1635,-21.1635,-2.40824,-2.40824,0	1/1:5:0,5,0:0:0:5,0:170,0:-9.53143,-1.50515,0,-9.53143,-1.50515,-9.53143	1/2:3:0,2,1:0:0:2,1:72,32:-5.6977,-2.59808,-1.99602,-3.36245,0,-3.06142	1/1:9:0,9,0:0:0:9,0:311,0:-17.032,-2.70927,0,-17.032,-2.70927,-17.032	1/2:9:0,7,2:0:0:7,2:252,64:-15.8813,-4.90624,-2.79903,-11.2469,0,-10.6449	1/1:178:0,177,0:0:0:177,0:6280,0:-317.696,-53.2823,0,-317.696,-53.2823,-317.696	1/1:80:0,80,0:0:0:80,0:2832,0:-150.129,-24.0824,0,-150.129,-24.0824,-150.129	1/1:47:0,47,0:0:0:47,0:1667,0:-88.3461,-14.1484,0,-88.3461,-14.1484,-88.3461	1/1:1:0,1,0:0:0:1,0:36,0:-2.08658,-0.30103,0,-2.08658,-0.30103,-2.08658	1/2:149:0,62,87:0:0:62,87:2187,2758:-296.551,-199,-180.336,-97.793,0,-71.6034	1/2:41:0,16,25:0:0:16,25:556,794:-82.536,-57.4519,-52.6354,-25.323,0,-17.7972	1/1:82:0,82,0:0:0:82,0:2896,0:-153.834,-24.6845,0,-153.834,-24.6845,-153.834	1/1:48:0,47,0:0:0:47,0:1665,0:-88.0108,-14.1484,0,-88.0108,-14.1484,-88.0108	1/1:35:0,35,0:0:0:35,0:1234,0:-65.7531,-10.5361,0,-65.7531,-10.5361,-65.7531	1/1:77:0,76,1:0:0:76,1:2663,29:-135.731,-22.8783,0,-133.692,-20.5801,-133.391	1/1:106:0,106,0:0:0:106,0:3756,0:-198.929,-31.9092,0,-198.929,-31.9092,-198.929	1/2:110:0,59,51:0:0:59,51:2082,1627:-210.439,-117.719,-99.9586,-92.971,0,-77.6185	1/1:59:0,59,0:0:0:59,0:2053,0:-111.289,-17.7608,0,-111.289,-17.7608,-111.289	1/1:53:0,53,0:0:0:53,0:1881,0:-99.5626,-15.9546,0,-99.5626,-15.9546,-99.5626	1/1:42:0,42,0:0:0:42,0:1483,0:-75.5199,-12.6433,0,-75.5199,-12.6433,-75.5199	.:.:.:.:.:.:.:.	1/2:140:0,77,61:0:0:77,61:2733,1935:-260.753,-139.592,-116.413,-121.209,0,-102.846	1/1:21:0,21,0:0:0:21,0:738,0:-37.8472,-6.32163,0,-37.8472,-6.32163,-37.8472	1/2:16:0,8,8:0:0:8,8:288,256:-31.3298,-18.7552,-16.347,-12.8238,0,-10.4156	1/2:103:0,55,48:0:0:55,48:1942,1516:-196.585,-109.52,-92.9632,-87.3152,0,-72.8657	1/1:29:0,27,1:0:0:27,1:958,32:-50.6722,-8.12781,0,-48.3612,-5.77902,-48.0602	1/1:6:0,6,0:0:0:6,0:214,0:-10.9357,-1.80618,0,-10.9357,-1.80618,-10.9357	1/1:13:0,13,0:0:0:13,0:461,0:-23.4484,-3.91339,0,-23.4484,-3.9133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chr08	33305050	.	T	C	119907	PASS	AB=0.429309;ABP=70.2446;AC=162;AF=0.870968;AN=186;AO=5391;CIGAR=1X;DP=6289;DPB=6289;DPRA=0;EPP=11709.4;EPPR=1944.31;GTI=0;LEN=1;MEANALT=1.04301;MQM=59.9939;MQMR=59.9888;NS=93;NUMALT=1;ODDS=0.904599;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193028;QR=31953;RO=894;RPL=0;RPP=11709.4;RPPR=1944.31;RPR=5391;RUN=1;SAF=5391;SAP=11709.4;SAR=0;SRF=894;SRP=1944.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:177:0,176:0:0:176:6296:-566.374,-52.9813,0	1/1:173:0,173:0:0:173:6189:-557.106,-52.0782,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	1/1:88:0,87:0:0:87:3100:-278.869,-26.1896,0	1/1:68:1,67:1:36:67:2388:-211.58,-16.8718,0	1/1:83:0,83:0:0:83:2964:-266.992,-24.9855,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:61:0,61:0:0:61:2171:-195.656,-18.3628,0	1/1:46:0,46:0:0:46:1632:-147.168,-13.8474,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:24:0,24:0:0:24:848:-76.6397,-7.22472,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:138:0,138:0:0:138:4950:-445.648,-41.5421,0	1/1:117:0,116:0:0:116:4138:-372.246,-34.9195,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	0/1:40:27,13:27:964:13:464:-30.0563,0,-75.0356	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:229:129,100:129:4612:100:3588:-254.19,0,-346.309	1/1:220:0,220:0:0:220:7872:-708.504,-66.2266,0	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	1/1:236:0,236:0:0:236:8456:-761.041,-71.0431,0	1/1:49:3,46:3:108:46:1648:-138.533,-4.6753,0	0/1:74:37,37:37:1316:37:1332:-97.9062,0,-96.4656	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:105:0,105:0:0:105:3772:-339.678,-31.6082,0	0/1:105:72,33:72:2564:33:1188:-75.6204,0,-199.403	0/1:33:20,13:20:712:13:460:-31.8014,0,-54.4727	.:.:.:.:.:.:.:.	0/1:68:38,30:38:1352:30:1067:-75.8718,0,-101.51	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	1/1:87:0,87:0:0:87:3099:-279.137,-26.1896,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	0/1:179:115,64:115:4116:64:2288:-152.297,0,-316.74	1/1:56:0,56:0:0:56:2004:-180.633,-16.8577,0	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	1/1:48:0,48:0:0:48:1716:-154.725,-14.4494,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:128:62,66:62:2220:66:2372:-175.206,0,-161.533	0/1:37:27,10:27:964:10:360:-21.6062,0,-75.9387	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:109:64,45:64:2272:45:1620:-113.278,0,-171.931	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:222:0,222:0:0:222:7952:-715.703,-66.8287,0	1/1:137:1,136:1:36:136:4876:-435.391,-37.6428,0	0/1:53:22,31:22:792:31:1112:-84.4368,0,-55.6511	1/1:83:0,83:0:0:83:2961:-266.722,-24.9855,0	1/1:126:2,124:2:72:124:4444:-393.294,-31.0931,0	1/1:82:1,81:1:36:81:2912:-258.716,-21.0862,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:14:3,11:3:104:11:396:-31.7683,0,-5.48839	1/1:66:0,66:0:0:66:2346:-211.399,-19.868,0	0/1:105:54,51:54:1944:51:1816:-132.113,0,-143.628	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	1/1:170:0,170:0:0:170:6072:-546.582,-51.1751,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:104:1,102:1:36:102:3656:-325.645,-27.7676,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:118:0,118:0:0:118:4236:-381.289,-35.5215,0	0/1:159:88,71:88:3133:71:2540:-180.987,0,-234.332	1/1:191:0,191:0:0:191:6864:-617.825,-57.4967,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:45:23,22:23:828:22:792:-58.0593,0,-61.2978	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:32:19,13:19:684:13:464:-32.4645,0,-52.2574	0/1:53:42,11:42:1504:11:396:-20.0282,0,-119.686	1/1:157:1,156:1:36:156:5563:-497.198,-43.6634,0	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0
chr08	33305081	.	G	T	18919.6	PASS	AB=0.563969;ABP=57.4615;AC=24;AF=0.129032;AN=186;AO=873;CIGAR=1X;DP=6227;DPB=6227;DPRA=1.06168;EPP=573.715;EPPR=11290.6;GTI=0;LEN=1;MEANALT=1.03333;MQM=59.9611;MQMR=59.9989;NS=93;NUMALT=1;ODDS=1.48574;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31159;QR=191616;RO=5353;RPL=197;RPP=573.715;RPPR=11290.6;RPR=676;RUN=1;SAF=873;SAP=1898.71;SAR=0;SRF=5353;SRP=11626.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:180:180,0:180:6459:0:0:0,-54.1854,-581.393	0/0:177:177,0:177:6333:0:0:0,-53.2823,-570.06	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.133	0/0:65:64,1:64:2287:1:36:0,-15.9687,-202.493	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:46:46,0:46:1633:0:0:0,-13.8474,-147.257	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871	0/0:112:112,0:112:4000:0:0:0,-33.7154,-360.183	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:39:13,26:13:468:26:928:-72.0981,0,-30.7195	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:228:103,125:103:3677:125:4479:-334.643,0,-262.497	0/0:217:217,0:217:7757:0:0:0,-65.3235,-698.161	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	0/0:229:229,0:229:8213:0:0:0,-68.9359,-739.178	0/0:48:45,3:45:1575:3:108:0,-4.37427,-131.959	0/1:74:37,37:37:1332:37:1313:-96.1935,0,-97.9062	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/0:105:105,0:105:3753:0:0:0,-31.6081,-337.969	0/1:107:36,71:36:1265:71:2532:-195.922,0,-81.9404	0/1:31:12,19:12:432:19:680:-52.1972,0,-29.8893	.:.:.:.:.:.:.:.	0/1:66:30,36:30:1065:36:1284:-95.9954,0,-76.2918	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/1:179:65,114:65:2328:114:4035:-309.408,0,-155.896	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.322	0/0:46:46,0:46:1625:0:0:0,-13.8474,-146.537	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:127:67,60:67:2404:60:2147:-155.266,0,-178.386	0/1:34:10,24:10:360:24:860:-67.4868,0,-22.5093	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:110:44,66:44:1580:66:2351:-178.735,0,-109.378	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:223:223,0:223:8000:0:0:0,-67.1297,-720.019	0/0:139:138,1:138:4956:1:36:0,-38.2449,-442.589	0/1:51:30,21:30:1076:21:752:-52.6537,0,-81.8003	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:129:126,2:126:4501:2:72:0,-32.0549,-398.421	0/0:76:75,1:75:2684:1:36:0,-19.28,-238.207	0/0:13:13,0:13:444:0:0:0,-3.91339,-40.2841	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/1:14:12,2:12:428:2:72:-2.6223,0,-34.6444	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:99:47,52:47:1680:52:1853:-137.246,0,-121.685	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:168:168,0:168:6040:0:0:0,-50.573,-543.7	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:102:101,1:101:3628:1:36:0,-27.1068,-323.126	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:120:120,0:120:4288:0:0:0,-36.1236,-386.096	0/1:159:73,86:73:2597:86:3081:-229.652,0,-186.114	0/0:191:191,0:191:6824:0:0:0,-57.4967,-614.23	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.157	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:45:22,23:22:788:23:828:-61.2978,0,-57.6984	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	0/1:54:11,43:11:381:43:1532:-121.912,0,-18.365	0/0:157:157,0:157:5624:0:0:0,-47.2617,-506.281	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286
chr08	33305097	.	T	C	14919.1	PASS	AB=0.564744;ABP=59.8082;AC=26;AF=0.139785;AN=186;AO=895;CIGAR=1X;DP=6183;DPB=6183;DPRA=1.09867;EPP=1946.48;EPPR=11479.2;GTI=1;LEN=1;MEANALT=1.02857;MQM=60;MQMR=59.9924;NS=93;NUMALT=1;ODDS=0.841353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31528;QR=188002;RO=5285;RPL=895;RPP=1946.48;RPPR=11479.2;RPR=0;RUN=1;SAF=895;SAP=1946.48;SAR=0;SRF=5285;SRP=11479.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/0:177:177,0:177:6289:0:0:0,-53.2823,-566.105	0/0:170:170,0:170:6070:0:0:0,-51.1751,-546.403	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/0:85:85,0:85:3013:0:0:0,-25.5875,-271.401	0/0:69:67,2:67:2379:2:72:0,-13.9343,-207.53	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:57:57,0:57:1974:0:0:0,-17.1587,-177.932	0/0:46:46,0:46:1596:0:0:0,-13.8474,-143.926	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:24:24,0:24:837:0:0:0,-7.22472,-75.6456	0/0:23:23,0:23:799:0:0:0,-6.92369,-72.2276	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:135:135,0:135:4812:0:0:0,-40.639,-433.235	0/0:115:115,0:115:4057:0:0:0,-34.6184,-365.319	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:60:60,0:60:2130:0:0:0,-18.0618,-191.967	0/1:41:14,27:14:504:27:972:-75.4557,0,-33.3559	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/1:228:99,129:99:3522:129:4582:-343.911,0,-248.555	0/0:213:213,0:213:7624:0:0:0,-64.1194,-686.195	0/1:18:11,7:11:392:7:248:-17.2457,0,-30.2015	0/0:226:226,0:226:8032:0:0:0,-68.0328,-722.9	0/0:47:44,3:44:1555:3:108:0,-4.07324,-130.166	0/1:71:35,36:35:1251:36:1264:-92.6867,0,-91.5211	0/1:13:3,10:3:104:10:360:-28.8309,0,-5.78942	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:101:101,0:101:3574:0:0:0,-30.404,-321.867	0/1:108:37,70:37:1304:70:2463:-189.392,0,-85.1276	0/1:32:12,20:12:432:20:703:-53.9606,0,-29.5882	.:.:.:.:.:.:.:.	0/1:65:28,37:28:985:37:1283:-96.2002,0,-69.3946	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:86:86,0:86:3050:0:0:0,-25.8886,-274.717	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:66:66,0:66:2328:0:0:0,-19.868,-209.779	0/0:88:88,0:88:3146:0:0:0,-26.4906,-283.364	0/1:179:66,113:66:2368:113:3942:-301.087,0,-159.494	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:98:98,0:98:3492:0:0:0,-29.5009,-314.49	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/1:10:5,5:5:180:5:162:-11.8885,0,-13.5418	0/1:129:66,63:66:2364:63:2225:-161.679,0,-174.185	0/1:37:10,27:10:360:27:968:-76.2993,0,-21.6062	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/1:111:45,66:45:1608:66:2308:-174.564,0,-111.596	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:57:56,1:56:1978:1:27:0,-14.4589,-175.594	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:224:223,1:223:7956:1:36:0,-63.8324,-712.466	0/0:135:134,1:134:4758:1:36:0,-37.0408,-424.78	0/1:55:31,24:31:1103:24:847:-59.9921,0,-83.0232	0/0:79:78,0:78:2775:0:0:0,-23.4803,-249.632	0/0:125:123,2:123:4395:2:57:0,-32.2154,-390.31	0/0:80:79,1:79:2796:1:36:0,-20.4841,-248.281	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:15:12,3:12:428:3:104:-5.18736,0,-34.3434	0/0:64:62,2:62:2196:2:72:0,-12.4292,-191.067	0/1:104:50,54:50:1766:54:1897:-139.698,0,-127.915	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:170:170,0:170:6067:0:0:0,-51.1751,-546.132	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:104:103,1:103:3680:1:36:0,-27.7088,-327.805	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:118:118,0:118:4215:0:0:0,-35.5215,-379.401	0/1:157:72,85:72:2588:85:3013:-224.139,0,-185.907	0/0:185:185,0:185:6624:0:0:0,-55.6905,-596.239	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:41:40,0:40:1432:0:0:0,-12.0412,-128.818	0/0:33:33,0:33:1156:0:0:0,-9.93399,-104.344	0/0:86:86,0:86:2979:0:0:0,-25.8886,-268.341	0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3333	0/1:44:21,23:21:752:23:824:-61.238,0,-54.7609	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:14:8,6:8:284:6:201:-14.2026,0,-21.6889	0/1:32:13,19:13:459:19:666:-50.6306,0,-32.0111	0/1:50:9,41:9:320:41:1440:-114.842,0,-14.0909	0/0:153:153,0:153:5430:0:0:0,-46.0576,-488.831	0/0:74:74,0:74:2585:0:0:0,-22.2762,-232.898
chr08	33305928	.	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chr08	33391397	.	C	T	13977.3	PASS	AB=0.497045;ABP=3.13864;AC=25;AF=0.134409;AN=186;AO=854;CIGAR=1X;DP=7874;DPB=7874;DPRA=1.01562;EPP=1857.45;EPPR=15220.7;GTI=4;LEN=1;MEANALT=1;MQM=59.993;MQMR=59.997;NS=93;NUMALT=1;ODDS=0.258971;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30509;QR=249378;RO=7016;RPL=0;RPP=1857.45;RPPR=15220.7;RPR=854;RUN=1;SAF=854;SAP=1857.45;SAR=0;SRF=7016;SRP=15238.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.575	0/0:111:111,0:111:3954:0:0:0,-33.4143,-356.052	0/0:220:219,0:219:7802:0:0:0,-65.9256,-701.854	0/0:46:46,0:46:1634:0:0:0,-13.8474,-147.347	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:126:126,0:126:4478:0:0:0,-37.9298,-403.192	0/0:54:54,0:54:1911:0:0:0,-16.2556,-172.267	0/0:70:70,0:70:2462:0:0:0,-21.0721,-221.835	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:47:47,0:47:1650:0:0:0,-14.1484,-148.786	0/0:142:142,0:142:5041:0:0:0,-42.7463,-453.839	0/0:101:101,0:101:3581:0:0:0,-30.404,-322.498	0/0:76:76,0:76:2695:0:0:0,-22.8783,-242.795	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.501	0/0:65:65,0:65:2303:0:0:0,-19.5669,-207.531	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:45:45,0:45:1582:0:0:0,-13.5463,-142.669	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.666	0/0:231:231,0:231:8242:0:0:0,-69.5379,-741.794	0/0:78:77,1:77:2708:1:36:0,-19.8821,-240.366	0/0:105:105,0:105:3730:0:0:0,-31.6081,-335.902	0/0:99:99,0:99:3531:0:0:0,-29.802,-318	0/1:54:39,15:39:1383:15:536:-32.3192,0,-108.512	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.203	0/1:148:92,56:92:3235:56:1989:-134.73,0,-246.821	0/0:217:216,1:216:7677:1:27:0,-62.6237,-688.271	0/1:44:30,14:30:1072:14:504:-32.4528,0,-83.5471	0/0:288:288,0:288:10191:0:0:0,-86.6966,-917.134	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.874	0/1:79:31,48:31:1104:48:1724:-131.664,0,-75.8893	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:19:18,1:18:644:1:36:0,-2.12129,-54.6923	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:9:8,0:8:284:0:0:0,-2.40824,-25.5441	0/1:14:9,5:9:316:5:180:-12.3376,0,-24.5644	0/0:263:262,1:262:9340:1:36:0,-75.5726,-836.97	0/1:170:56,114:56:1987:114:4072:-315.492,0,-127.929	0/1:63:36,27:36:1288:27:968:-68.4725,0,-97.2587	.:.:.:.:.:.:.:.	0/1:99:53,46:53:1884:46:1627:-116.914,0,-140.037	0/1:33:17,16:17:599:16:576:-42.241,0,-44.3041	0/0:129:129,0:129:4582:0:0:0,-38.8329,-412.548	0/0:74:74,0:74:2630:0:0:0,-22.2762,-236.947	0/0:69:68,0:68:2414:0:0:0,-20.47,-217.274	0/0:107:107,0:107:3777:0:0:0,-32.2102,-340.132	0/0:117:117,0:117:4163:0:0:0,-35.2205,-374.855	0/1:152:83,69:83:2951:69:2472:-176.977,0,-220.068	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:89:88,0:88:3134:0:0:0,-26.4906,-282.054	0/0:120:120,0:120:4279:0:0:0,-36.1236,-385.289	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:118:65,53:65:2312:53:1896:-135.397,0,-172.82	0/1:29:10,19:10:360:19:680:-52.7993,0,-24.0144	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/1:132:55,77:55:1972:77:2756:-208.546,0,-138.019	0/0:50:50,0:50:1775:0:0:0,-15.0515,-160.032	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:110:108,2:108:3830:2:72:0,-26.2766,-338.062	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:142:142,0:142:5039:0:0:0,-42.7463,-453.661	0/0:83:82,1:82:2899:1:36:0,-21.3872,-257.549	0/0:31:31,0:31:1090:0:0:0,-9.33193,-98.4079	0/0:76:76,0:76:2696:0:0:0,-22.8783,-242.886	0/0:108:108,0:108:3806:0:0:0,-32.5112,-342.585	0/0:119:117,2:117:4171:2:72:0,-28.9858,-368.737	0/0:48:48,0:48:1695:0:0:0,-14.4494,-152.835	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:37:37,0:37:1307:0:0:0,-11.1381,-117.931	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/0:182:182,0:182:6486:0:0:0,-54.7875,-583.828	0/1:58:26,32:26:928:32:1144:-85.8098,0,-66.3785	0/0:95:95,0:95:3374:0:0:0,-28.5978,-303.877	0/0:181:181,0:181:6468:0:0:0,-54.4864,-582.207	0/0:142:141,1:141:5020:1:36:0,-39.148,-448.352	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/1:117:49,68:49:1727:68:2429:-183.643,0,-120.494	0/0:151:151,0:151:5384:0:0:0,-45.4555,-484.694	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.966	0/0:82:82,0:82:2906:0:0:0,-24.6845,-261.776	0/0:65:65,0:65:2310:0:0:0,-19.5669,-208.16	0/0:131:131,0:131:4679:0:0:0,-39.4349,-421.272	0/0:32:32,0:32:1114:0:0:0,-9.63296,-100.566	0/1:86:42,44:42:1504:44:1576:-116.243,0,-109.766	0/0:97:96,1:96:3423:1:36:0,-25.6016,-304.686	0/1:47:28,19:28:1008:19:676:-47.0196,0,-76.8879	0/1:99:61,38:61:2161:38:1368:-93.6189,0,-164.953	0/1:107:40,67:40:1411:67:2377:-181.978,0,-95.0763	0/0:106:106,0:106:3765:0:0:0,-31.9092,-339.05	0/0:117:117,0:117:4148:0:0:0,-35.2205,-373.505
chr08	33391436	.	T	A	11962.1	PASS	AB=0.478589;ABP=9.33328;AC=25;AF=0.134409;AN=186;AO=771;CIGAR=1X;DP=7651;DPB=7651;DPRA=0.940996;EPP=1677.22;EPPR=14940.6;GTI=4;LEN=1;MEANALT=1.03226;MQM=59.939;MQMR=59.9985;NS=93;NUMALT=1;ODDS=0.83537;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27070;QR=244394;RO=6879;RPL=771;RPP=1677.22;RPPR=14940.6;RPR=0;RUN=1;SAF=771;SAP=1677.22;SAR=0;SRF=6879;SRP=14940.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:104:104,0:104:3699:0:0:0,-31.3071,-333.111	0/0:220:220,0:220:7815:0:0:0,-66.2266,-703.384	0/0:45:45,0:45:1584:0:0:0,-13.5463,-142.848	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:122:122,0:122:4334:0:0:0,-36.7257,-390.238	0/0:52:52,0:52:1829:0:0:0,-15.6536,-164.889	0/0:67:67,0:67:2381:0:0:0,-20.169,-214.546	0/0:66:66,0:66:2340:0:0:0,-19.868,-210.858	0/0:46:46,0:46:1622:0:0:0,-13.8474,-146.267	0/0:136:136,0:136:4797:0:0:0,-40.9401,-431.89	0/0:100:100,0:100:3524:0:0:0,-30.103,-317.372	0/0:73:73,0:73:2580:0:0:0,-21.9752,-232.451	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.347	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.773	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/0:229:229,0:229:8159:0:0:0,-68.9359,-734.327	0/0:72:71,1:71:2502:1:36:0,-18.0759,-221.835	0/0:103:103,0:103:3656:0:0:0,-31.0061,-329.244	0/0:93:93,0:93:3306:0:0:0,-27.9958,-297.759	0/1:47:35,12:35:1239:12:428:-24.7104,0,-97.6652	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.89	0/1:141:89,52:89:3162:52:1794:-119.293,0,-242.36	0/0:218:218,0:218:7732:0:0:0,-65.6245,-695.915	0/1:42:30,12:30:1059:12:428:-26.2155,0,-82.9772	0/0:284:283,1:283:10048:1:32:0,-82.2932,-901.063	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/1:77:31,46:31:1108:46:1640:-124.709,0,-76.8517	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:14:9,5:9:324:5:171:-11.511,0,-25.2914	0/0:256:256,0:256:9097:0:0:0,-77.0637,-818.713	0/1:155:57,98:57:2019:98:3455:-264.505,0,-135.323	0/1:60:36,24:36:1280:24:847:-58.4869,0,-97.4414	.:.:.:.:.:.:.:.	0/1:90:48,42:48:1699:42:1504:-108.557,0,-126.103	0/1:32:17,15:17:608:15:524:-37.8567,0,-45.4191	0/0:128:128,0:128:4568:0:0:0,-38.5318,-411.283	0/0:75:75,0:75:2662:0:0:0,-22.5772,-239.826	0/0:66:66,0:66:2338:0:0:0,-19.868,-210.679	0/0:102:102,0:102:3601:0:0:0,-30.7051,-324.299	0/0:119:119,0:119:4224:0:0:0,-35.8226,-380.341	0/1:146:82,64:82:2913:64:2253:-159.081,0,-218.454	0/0:80:80,0:80:2839:0:0:0,-24.0824,-255.749	0/0:87:87,0:87:3089:0:0:0,-26.1896,-278.236	0/0:117:117,0:117:4156:0:0:0,-35.2205,-374.224	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:117:66,51:66:2352:51:1801:-127.149,0,-176.719	0/1:28:10,18:10:360:18:640:-49.5005,0,-24.3155	0/1:16:12,4:12:424:4:140:-8.1281,0,-33.6799	0/1:122:51,71:51:1828:71:2531:-191.259,0,-128.075	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:59:59,0:59:2111:0:0:0,-17.7608,-190.258	0/0:109:107,2:107:3806:2:72:0,-25.9755,-335.902	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:141:141,0:141:5019:0:0:0,-42.4452,-451.859	0/0:83:82,1:82:2895:1:36:0,-21.3872,-257.187	0/0:30:30,0:30:1071:0:0:0,-9.0309,-96.7016	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.648	0/0:100:99,1:99:3520:1:24:0,-27.7165,-314.625	0/0:113:111,2:111:3945:2:72:0,-27.1797,-348.406	0/0:49:49,0:49:1721:0:0:0,-14.7505,-155.173	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:13:10,3:10:341:3:108:-6.16178,0,-27.1044	0/0:178:178,0:178:6337:0:0:0,-53.5833,-570.424	0/1:55:25,29:25:892:29:1032:-76.5782,0,-63.9844	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/0:184:184,0:184:6566:0:0:0,-55.3895,-591.021	0/0:140:140,0:140:4946:0:0:0,-42.1442,-445.293	0/0:53:53,0:53:1880:0:0:0,-15.9546,-169.479	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.123	0/1:108:48,60:48:1716:60:2101:-156.845,0,-122.214	0/0:148:148,0:148:5235:0:0:0,-44.5524,-471.289	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:66:66,0:66:2343:0:0:0,-19.868,-211.129	0/0:129:129,0:129:4586:0:0:0,-38.8329,-412.907	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.7422	0/1:82:40,42:40:1406:42:1469:-107.817,0,-102.151	0/0:97:96,1:96:3431:1:36:0,-25.6016,-305.405	0/1:43:28,15:28:1004:15:524:-34.5453,0,-77.7316	0/1:95:58,37:58:2046:37:1291:-87.8904,0,-155.813	0/1:91:37,54:37:1312:54:1797:-134.607,0,-90.9879	0/0:105:105,0:105:3710:0:0:0,-31.6081,-334.102	0/0:118:118,0:118:4196:0:0:0,-35.5215,-377.824
chr09	39526	.	A	G	76051.3	PASS	AB=0.545011;ABP=143.757;AC=54;AF=0.287234;AN=188;AO=4381;CIGAR=1X;DP=14684;DPB=14684;DPRA=1.05631;EPP=9507.55;EPPR=22351.8;GTI=1;LEN=1;MEANALT=1.08955;MQM=59.9927;MQMR=59.9998;NS=94;NUMALT=1;ODDS=3.19713;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156397;QR=351156;RO=10296;RPL=4380;RPP=9507.55;RPPR=22351.8;RPR=1;RUN=1;SAF=4381;SAP=9516.23;SAR=0;SRF=10296;SRP=22360.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:44,36:44:1511:36:1256:-89.2565,0,-112.194	0/0:138:138,0:138:4676:0:0:0,-41.5421,-421.001	0/0:369:369,0:369:12361:0:0:0,-111.08,-1112.36	0/0:391:390,1:390:13186:1:36:0,-114.104,-1182.99	0/1:125:56,69:56:1902:69:2472:-185.105,0,-133.818	0/1:25:10,15:10:348:15:525:-40.0532,0,-24.1294	0/0:114:114,0:114:3898:0:0:0,-34.3174,-351.013	0/0:207:207,0:207:7231:0:0:0,-62.3132,-650.847	0/1:218:99,119:99:3365:119:4272:-319.032,0,-237.437	0/0:191:191,0:191:6621:0:0:0,-57.4967,-595.974	0/1:45:23,21:23:790:21:756:-54.7621,0,-57.808	0/1:145:60,85:60:1838:85:3029:-229.19,0,-122.023	0/1:92:39,53:39:1319:53:1884:-142.141,0,-91.3066	0/0:49:49,0:49:1702:0:0:0,-14.7505,-153.462	0/1:104:45,59:45:1513:59:2124:-160.121,0,-105.144	0/1:123:50,73:50:1719:73:2578:-195.241,0,-117.962	0/0:43:43,0:43:1411:0:0:0,-12.9443,-127.269	0/0:29:28,1:28:979:1:32:0,-5.53056,-85.2227	0/0:22:22,0:22:750:0:0:0,-6.62266,-67.8124	0/1:332:145,185:145:4949:185:6612:-495.459,0,-345.864	0/1:327:137,190:137:4816:190:6739:-508.147,0,-335.161	0/1:296:115,181:115:4073:181:6429:-489.59,0,-277.654	0/1:166:83,83:83:2787:83:2979:-218.37,0,-201.091	0/1:120:30,90:30:1049:90:3216:-253.539,0,-58.5946	0/0:177:176,1:176:5988:1:36:0,-49.684,-535.43	0/1:564:292,272:292:10194:272:9745:-707.21,0,-747.621	0/1:455:211,244:211:6934:244:8732:-648.899,0,-487.168	0/1:56:31,25:31:1074:25:892:-63.742,0,-80.1063	0/0:618:618,0:618:20856:0:0:0,-186.037,-1876.59	0/0:167:167,0:167:5727:0:0:0,-50.272,-515.55	0/0:178:174,3:174:5936:3:108:0,-43.4546,-524.317	0/0:23:23,0:23:785:0:0:0,-6.92369,-70.9607	0/0:35:35,0:35:1180:0:0:0,-10.536,-106.493	0/1:26:9,17:9:324:17:600:-46.5024,0,-21.6791	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/1:389:171,218:171:5808:218:7756:-580.972,0,-405.745	0/0:327:327,0:327:11365:0:0:0,-98.4368,-1022.75	0/1:50:22,28:22:768:28:1004:-75.6244,0,-54.3889	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:206:109,97:109:3584:97:3457:-249.329,0,-260.747	0/1:43:24,19:24:814:19:684:-48.946,0,-60.6252	0/1:279:155,124:155:5214:124:4409:-312.994,0,-385.41	0/1:57:31,26:31:1048:26:936:-67.4008,0,-77.459	0/0:77:77,0:77:2678:0:0:0,-23.1793,-241.263	0/0:229:229,0:229:7777:0:0:0,-68.9359,-699.973	0/0:194:193,1:193:6621:1:36:0,-54.8015,-592.377	0/0:438:438,0:438:15147:0:0:0,-131.851,-1362.98	0/1:178:73,105:73:2502:105:3765:-285.464,0,-171.843	0/1:156:76,80:76:2670:80:2864:-211.037,0,-193.584	0/0:178:176,2:176:5887:2:72:0,-46.7466,-523.113	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/0:203:203,0:203:6840:0:0:0,-61.1091,-615.683	0/1:91:36,55:36:1269:55:1971:-150.27,0,-87.117	0/1:16:10,6:10:345:6:212:-14.6083,0,-26.5643	0/1:267:131,136:131:4523:136:4860:-357.178,0,-326.865	0/0:137:136,1:136:4553:1:36:0,-37.6428,-406.339	0/1:18:13,5:13:426:5:180:-11.1335,0,-33.2347	0/0:46:46,0:46:1586:0:0:0,-13.8474,-143.023	0/0:94:94,0:94:3207:0:0:0,-28.2968,-288.852	0/1:142:65,77:65:2232:77:2744:-204.457,0,-158.393	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/0:382:382,0:382:13355:0:0:0,-114.993,-1201.76	0/1:368:174,194:174:6014:194:6964:-516.043,0,-430.592	0/1:89:32,57:32:1087:57:2052:-158.16,0,-71.3374	0/0:213:212,1:212:7219:1:36:0,-60.5211,-646.181	0/1:280:139,141:139:4842:141:5029:-368.469,0,-351.647	0/1:204:61,142:61:2116:142:5099:-397.582,0,-129.234	0/1:32:8,24:8:288:24:856:-67.7281,0,-16.6344	0/1:65:30,35:30:911:35:1251:-93.3273,0,-62.6975	0/1:83:26,57:26:901:57:2035:-158.436,0,-56.4167	0/1:33:18,15:18:621:15:540:-39.0025,0,-46.2772	0/1:282:83,199:83:2547:199:7098:-553.987,0,-144.566	0/1:141:55,86:55:1861:86:3076:-234.622,0,-125.315	0/1:76:49,26:49:1639:26:928:-61.0456,0,-124.994	0/0:309:307,1:307:10570:1:24:0,-90.5423,-948.843	0/0:168:167,1:167:5644:1:36:0,-46.9748,-504.486	0/1:143:70,73:70:2436:73:2605:-191.65,0,-176.443	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:187:185,2:185:6360:2:57:0,-50.8793,-567.086	0/1:169:90,79:90:2997:79:2806:-201.714,0,-219.08	0/1:370:210,160:210:7207:160:5712:-402.816,0,-537.31	0/1:90:38,52:38:1250:52:1872:-141.666,0,-85.6927	0/0:90:90,0:90:3040:0:0:0,-27.0927,-273.826	0/1:57:31,26:31:1092:26:919:-65.8675,0,-81.4309	0/0:170:167,3:167:5745:3:108:0,-41.0999,-507.101	0/0:28:28,0:28:932:0:0:0,-8.42884,-84.179	0/1:108:48,60:48:1606:60:2126:-159.095,0,-112.305	0/0:103:103,0:103:3353:0:0:0,-31.0061,-301.982	0/0:23:23,0:23:767:0:0:0,-6.92369,-69.3359	0/1:94:39,55:39:1354:55:1960:-148.379,0,-93.8573	0/1:117:35,82:35:1213:82:2927:-228.444,0,-74.2506	0/0:146:145,1:145:4841:1:36:0,-40.3521,-432.247	0/0:152:151,1:151:5215:1:36:0,-42.1583,-465.897
chr09	54353	.	T	A	89990.2	PASS	AB=0.575006;ABP=401.074;AC=53;AF=0.281915;AN=188;AO=4701;CIGAR=1X;DP=13963;DPB=13963;DPRA=1.23776;EPP=10202.4;EPPR=20000.2;GTI=3;LEN=1;MEANALT=1.09677;MQM=44.037;MQMR=55.2279;NS=94;NUMALT=1;ODDS=0.838135;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167847;QR=328135;RO=9253;RPL=2160;RPP=70.0627;RPPR=27.494;RPR=2541;RUN=1;SAF=2161;SAP=69.3605;SAR=2540;SRF=4799;SRP=30.9428;SRR=4454;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:92:45,47:45:1612:47:1684:-89.3582,0,-117.007	0/0:224:224,0:224:7896:0:0:0,-67.4307,-708.433	0/0:343:341,0:341:12122:0:0:0,-102.651,-1081.51	0/0:259:259,0:259:9167:0:0:0,-77.9668,-821.771	0/1:96:46,50:46:1640:50:1792:-118.367,0,-118.727	0/1:88:27,61:27:960:61:2154:-147.811,0,-60.099	0/0:224:224,0:224:7932:0:0:0,-67.4307,-711.576	0/0:228:227,1:227:8052:1:36:0,-65.0366,-716.855	0/1:204:101,103:101:3580:103:3680:-213.139,0,-258.893	0/0:121:121,0:121:4291:0:0:0,-36.4246,-385.298	0/1:75:38,37:38:1343:37:1317:-80.8202,0,-98.491	0/1:121:56,65:56:1980:65:2319:-127.748,0,-141.424	0/1:119:55,64:55:1944:64:2281:-124.752,0,-138.738	0/0:133:133,0:133:4728:0:0:0,-40.037,-422.717	0/1:99:47,52:47:1676:52:1864:-117.954,0,-121.164	0/1:85:42,43:42:1479:43:1539:-90.7328,0,-107.608	0/0:111:111,0:111:3935:0:0:0,-33.4143,-352.848	0/0:76:76,0:76:2662:0:0:0,-22.8783,-239.107	0/0:53:53,0:53:1839:0:0:0,-15.9546,-165.119	0/1:314:118,196:118:4181:196:7018:-464.204,0,-281.34	0/1:230:90,140:90:3202:140:4992:-321.209,0,-218.418	0/1:128:30,98:30:1072:98:3499:-240.136,0,-58.2003	0/1:124:52,72:52:1852:72:2586:-157.49,0,-128.564	0/1:230:85,145:85:3036:145:5132:-340.537,0,-203.783	0/0:119:117,1:117:4176:1:36:0,-33.3009,-371.371	0/1:355:155,200:155:5520:200:7165:-497.965,0,-389.186	0/1:498:209,287:209:7418:287:10237:-619.614,0,-515.234	0/1:50:24,26:24:860:26:936:-53.1466,0,-62.2797	0/0:439:437,2:437:15496:2:72:0,-125.315,-1384.69	0/0:219:219,0:219:7737:0:0:0,-65.9256,-694.223	0/0:169:166,3:166:5908:3:93:0,-42.1973,-522.318	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.6729	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.527	0/1:20:9,11:9:324:11:396:-27.5632,0,-23.4714	0/1:12:6,6:6:204:6:216:-10.3874,0,-15.0631	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.6608	0/1:266:152,114:152:5375:114:4083:-244.804,0,-403.175	0/0:133:131,2:131:4647:2:72:0,-33.2003,-410.537	0/1:100:51,49:51:1784:49:1743:-98.6289,0,-130.012	0/1:4:3,1:3:99:1:36:-2.39415,0,-8.03246	0/1:225:102,123:102:3599:123:4408:-280.82,0,-256.036	0/1:46:23,23:23:828:23:811:-49.4746,0,-60.6133	0/1:345:116,229:116:4104:229:8161:-536.514,0,-264.9	0/1:107:46,61:46:1628:61:2184:-148.478,0,-114.467	0/0:82:82,0:82:2924:0:0:0,-24.6845,-262.565	0/0:137:137,0:137:4867:0:0:0,-41.2411,-437.512	0/0:154:154,0:154:5488:0:0:0,-46.3586,-491.148	0/0:232:232,0:232:8175:0:0:0,-69.839,-734.199	0/1:188:90,97:90:3202:97:3444:-213.283,0,-230.66	0/1:195:100,95:100:3559:95:3404:-206.536,0,-261.123	0/0:181:181,0:181:6442:0:0:0,-54.4864,-579.067	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7105	0/0:183:183,0:183:6513:0:0:0,-55.0885,-582.54	0/1:79:37,41:37:1320:41:1455:-92.9494,0,-94.3665	0/1:37:11,26:11:396:26:916:-65.989,0,-24.7737	0/1:200:76,124:76:2694:124:4432:-280.044,0,-181.731	0/0:96:95,1:95:3363:1:36:0,-25.3006,-295.796	0/1:21:6,15:6:208:15:540:-37.679,0,-12.7341	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.4895	0/0:153:153,0:153:5429:0:0:0,-46.0576,-486.988	0/1:158:90,68:90:3174:68:2405:-148.671,0,-237.901	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.60928	0/0:147:147,0:147:5243:0:0:0,-44.2514,-471.072	0/1:264:133,131:133:4711:131:4666:-302.44,0,-344.129	0/1:146:53,93:53:1860:93:3321:-215.628,0,-123.502	0/0:102:102,0:102:3632:0:0:0,-30.7051,-325.307	0/1:208:90,118:90:3180:118:4217:-259.406,0,-222.773	0/1:214:64,150:64:2283:150:5376:-339.218,0,-140.997	0/1:53:23,30:23:810:30:1072:-69.2075,0,-57.1244	0/1:142:59,83:59:2112:83:2975:-176.311,0,-146.763	0/1:103:35,68:35:1243:68:2428:-165.891,0,-80.4259	0/1:42:16,26:16:564:26:932:-58.9796,0,-38.0328	0/1:224:103,121:103:3670:121:4328:-230.809,0,-260.82	0/1:163:56,107:56:1983:107:3843:-219.598,0,-128.771	0/1:356:147,209:147:5206:209:7449:-475.177,0,-359.642	0/0:215:215,0:215:7586:0:0:0,-64.7214,-681.507	0/0:167:167,0:167:5907:0:0:0,-50.272,-528.647	0/1:179:80,99:80:2856:99:3523:-227.882,0,-202.759	0/0:26:26,0:26:907:0:0:0,-7.82678,-81.8915	0/0:174:171,2:171:6107:2:72:0,-46.6452,-542.113	0/1:196:86,110:86:3012:110:3918:-238.894,0,-210.61	0/1:341:124,216:124:4426:216:7746:-502.483,0,-294.588	0/1:104:48,56:48:1694:56:1962:-132.223,0,-120.992	0/0:99:99,0:99:3490:0:0:0,-29.802,-313.312	0/1:81:38,43:38:1338:43:1536:-98.7252,0,-95.5498	0/0:187:183,4:183:6477:4:144:0,-44.7359,-570.092	0/0:43:43,0:43:1524:0:0:0,-12.9443,-136.721	0/1:93:44,49:44:1567:49:1755:-105.051,0,-112.549	0/0:116:116,0:116:4108:0:0:0,-34.9195,-368.589	0/0:85:85,0:85:3028:0:0:0,-25.5875,-271.545	0/1:178:86,92:86:3030:92:3299:-191.492,0,-218.598	0/1:134:32,102:32:1127:102:3643:-242.723,0,-61.2913	0/0:142:142,0:142:5051:0:0:0,-42.7463,-453.672	0/0:163:162,1:162:5778:1:36:0,-45.4696,-515.447
chr09	54394	.	G	C	98925.2	PASS	AB=0.433606;ABP=167.08;AC=134;AF=0.712766;AN=188;AO=4891;CIGAR=1X;DP=7346;DPB=7346;DPRA=6.57168;EPP=10623.7;EPPR=5299.25;GTI=2;LEN=1;MEANALT=1.06452;MQM=59.5831;MQMR=59.7152;NS=94;NUMALT=1;ODDS=0.10969;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174501;QR=86355;RO=2447;RPL=4891;RPP=10623.7;RPPR=5299.25;RPR=0;RUN=1;SAF=0;SAP=10623.7;SAR=4891;SRF=0;SRP=5316.6;SRR=2447;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:17,6:17:588:6:207:-12.0432,0,-46.318	1/1:159:0,159:0:0:159:5682:-511.357,-47.8638,0	1/1:64:0,63:0:0:63:2251:-202.414,-18.9649,0	1/1:128:1,125:1:36:125:4463:-398.224,-34.6913,0	0/1:56:35,21:35:1231:21:752:-51.144,0,-94.2264	0/1:65:44,21:44:1568:21:746:-47.8941,0,-121.837	1/1:105:0,105:0:0:105:3749:-337.431,-31.6082,0	1/1:127:1,126:1:36:126:4480:-399.752,-34.6325,0	0/1:94:55,39:55:1940:39:1396:-97.5911,0,-146.547	1/1:77:0,77:0:0:77:2747:-247.464,-23.1793,0	0/1:38:16,22:16:563:22:784:-59.4424,0,-39.5597	0/1:45:25,20:25:892:20:720:-51.5579,0,-67.0452	0/1:45:24,21:24:847:21:748:-54.0826,0,-62.9938	1/1:82:0,82:0:0:82:2899:-260.751,-24.6845,0	0/1:50:27,23:27:934:23:828:-59.7926,0,-69.3127	0/1:45:20,25:20:703:25:887:-66.5925,0,-50.0472	1/1:86:0,86:0:0:86:3072:-276.533,-25.8886,0	1/1:72:0,72:0:0:72:2560:-230.605,-21.6742,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:190:109,81:109:3788:81:2912:-205.09,0,-283.925	0/1:145:74,71:74:2623:71:2528:-184.098,0,-192.654	0/1:57:44,13:44:1568:13:460:-24.5767,0,-124.25	0/1:39:26,13:26:916:13:468:-30.7191,0,-70.8931	0/1:133:89,44:89:3155:44:1580:-102.428,0,-244.127	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:220:137,83:137:4847:83:2961:-200.484,0,-370.156	0/1:226:132,91:132:4647:91:3223:-222.558,0,-350.089	0/1:16:9,7:9:324:7:252:-18.2078,0,-24.6894	1/1:224:1,223:1:32:223:7996:-716.413,-64.2314,0	1/1:164:0,164:0:0:164:5875:-528.791,-49.3689,0	1/1:95:2,93:2:72:93:3327:-292.774,-21.7611,0	1/1:7:0,7:0:0:7:252:-23.0243,-2.10721,0	1/1:11:0,11:0:0:11:396:-35.9781,-3.31133,0	0/1:18:9,9:9:320:9:320:-23.7099,0,-23.7238	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:9:0,9:0:0:9:320:-29.1414,-2.70927,0	0/1:127:53,74:53:1884:74:2641:-199.692,0,-131.608	1/1:72:2,70:2:72:70:2491:-217.587,-14.8374,0	0/1:49:22,27:22:783:27:972:-73.0474,0,-56.029	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:147:75,72:75:2646:72:2588:-188.908,0,-194.114	0/1:20:12,8:12:416:8:288:-20.2406,0,-31.751	0/1:203:126,77:126:4425:77:2751:-186.694,0,-337.298	0/1:71:41,30:41:1439:30:1062:-74.5122,0,-108.431	1/1:52:0,52:0:0:52:1850:-166.714,-15.6536,0	1/1:30:0,30:0:0:30:1076:-97.1462,-9.0309,0	1/1:102:0,101:0:0:101:3606:-324.302,-30.404,0	1/1:125:0,125:0:0:125:4396:-395.725,-37.6288,0	0/1:84:49,35:49:1743:35:1239:-86.5182,0,-131.835	0/1:106:44,62:44:1568:62:2213:-167.519,0,-109.498	1/1:90:0,90:0:0:90:3197:-287.943,-27.0927,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:102:0,102:0:0:102:3629:-326.736,-30.7051,0	0/1:40:20,20:20:708:20:705:-51.6249,0,-52.0044	0/1:30:23,7:23:816:7:252:-13.9981,0,-64.7308	0/1:110:64,46:64:2259:46:1636:-114.414,0,-170.453	1/1:29:1,28:1:36:28:995:-86.2634,-5.1316,0	0/1:15:8,7:8:288:7:252:-18.5111,0,-21.7486	1/1:16:0,16:0:0:16:572:-51.7674,-4.81648,0	1/1:61:0,61:0:0:61:2172:-195.729,-18.3628,0	0/1:89:40,49:40:1423:49:1737:-129.814,0,-101.57	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	1/1:75:0,75:0:0:75:2675:-240.992,-22.5773,0	0/1:176:77,99:77:2718:99:3526:-264.485,0,-191.854	0/1:89:54,35:54:1906:35:1248:-85.8314,0,-145.019	1/1:53:0,53:0:0:53:1890:-170.375,-15.9546,0	0/1:93:46,47:46:1611:47:1676:-123.052,0,-117.28	0/1:78:54,24:54:1928:24:857:-53.9701,0,-150.309	0/1:29:17,12:17:595:12:432:-30.4913,0,-45.145	0/1:63:43,20:43:1528:20:716:-45.7946,0,-118.848	0/1:59:33,26:33:1180:26:921:-65.3805,0,-88.7439	0/1:18:11,7:11:388:7:252:-17.608,0,-29.8388	0/1:85:41,44:41:1443:44:1558:-114.922,0,-104.571	0/1:55:39,16:39:1363:16:572:-35.2568,0,-106.399	0/1:203:117,86:117:4135:86:3076:-215.907,0,-311.199	1/1:147:0,147:0:0:147:5233:-470.925,-44.2514,0	1/1:87:0,87:0:0:87:3109:-279.789,-26.1896,0	0/1:134:73,61:73:2567:61:2184:-156.48,0,-190.901	1/1:24:0,24:0:0:24:859:-77.6259,-7.22472,0	1/1:112:0,112:0:0:112:4007:-360.781,-33.7154,0	0/1:113:61,52:61:2156:52:1849:-132.663,0,-160.264	0/1:176:106,70:106:3738:70:2489:-171.269,0,-283.553	0/1:67:37,30:37:1312:30:1068:-76.2573,0,-98.2127	1/1:48:0,48:0:0:48:1716:-154.72,-14.4494,0	0/1:53:26,27:26:907:27:963:-71.0264,0,-65.9898	1/1:91:2,89:2:72:89:3196:-281.016,-20.557,0	1/1:34:0,34:0:0:34:1220:-110.062,-10.235,0	0/1:45:27,18:27:951:18:644:-44.7361,0,-72.3383	1/1:47:0,47:0:0:47:1671:-150.638,-14.1484,0	1/1:37:0,37:0:0:37:1328:-119.811,-11.1381,0	0/1:78:43,35:43:1506:35:1235:-87.9685,0,-112.318	0/1:65:48,17:48:1687:17:611:-35.752,0,-132.544	1/1:67:0,66:0:0:66:2364:-212.654,-19.868,0	1/1:75:1,74:1:36:74:2655:-235.592,-18.979,0
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chr09	101296	.	T	C	43913.9	PASS	AB=0.566301;ABP=183.837;AC=53;AF=0.281915;AN=188;AO=2694;CIGAR=1X;DP=8059;DPB=8059;DPRA=1.20958;EPP=5852.96;EPPR=11642.1;GTI=4;LEN=1;MEANALT=1;MQM=59.807;MQMR=59.9131;NS=94;NUMALT=1;ODDS=1.60931;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92869;QR=189878;RO=5364;RPL=2694;RPP=5852.96;RPPR=11650.8;RPR=0;RUN=1;SAF=2694;SAP=5852.96;SAR=0;SRF=5363;SRP=11642.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:49,29:49:1735:29:993:-66.1941,0,-132.918	0/0:53:52,1:52:1839:1:36:0,-12.3563,-162.191	0/0:82:82,0:82:2900:0:0:0,-24.6845,-261.236	0/0:221:221,0:221:7806:0:0:0,-66.5276,-702.577	0/1:74:41,33:41:1464:33:1155:-81.9747,0,-109.78	0/1:55:42,13:42:1485:13:455:-24.7253,0,-117.386	0/0:99:99,0:99:3517:0:0:0,-29.802,-316.74	0/0:143:141,2:141:4981:2:68:0,-36.5896,-441.982	0/1:86:52,34:52:1864:34:1128:-75.9242,0,-142.151	0/0:70:70,0:70:2466:0:0:0,-21.0721,-222.194	0/1:65:27,38:27:964:38:1306:-98.2678,0,-67.5097	0/1:103:35,68:35:1243:68:2278:-174.271,0,-81.1678	0/1:52:19,33:19:676:33:1140:-87.249,0,-45.5144	0/0:47:47,0:47:1655:0:0:0,-14.1484,-148.379	0/1:60:27,33:27:960:33:1100:-81.235,0,-68.6545	0/1:58:19,39:19:657:39:1304:-100.187,0,-41.9907	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:26:26,0:26:911:0:0:0,-7.82678,-82.305	0/0:32:32,0:32:1112:0:0:0,-9.63296,-100.384	0/1:102:45,57:45:1603:57:2002:-149.748,0,-113.854	0/1:149:53,96:53:1887:96:3357:-257.495,0,-125.254	0/1:86:19,67:19:684:67:2334:-184.42,0,-36.0017	0/1:138:64,74:64:2214:74:2535:-186.856,0,-157.963	0/1:61:28,33:28:991:33:1163:-86.6133,0,-71.1398	0/0:77:77,0:77:2728:0:0:0,-23.1793,-245.762	0/1:231:114,117:114:4071:117:4040:-294.241,0,-297.039	0/1:255:98,157:98:3481:157:5382:-407.736,0,-236.736	0/1:39:10,29:10:360:29:1006:-79.1089,0,-21.0041	0/0:187:187,0:187:6652:0:0:0,-56.2926,-598.334	0/0:109:109,0:109:3881:0:0:0,-32.8123,-349.167	0/0:90:90,0:90:3141:0:0:0,-27.0927,-282.915	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:19:19,0:19:666:0:0:0,-5.71957,-59.7764	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5517	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/1:192:67,125:67:2344:125:4335:-332.525,0,-153.264	0/0:74:74,0:74:2605:0:0:0,-22.2762,-234.699	0/1:51:21,30:21:715:30:1054:-79.7952,0,-49.3113	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:181:68,113:68:2432:113:3934:-299.451,0,-164.649	0/1:40:22,18:22:783:18:627:-44.713,0,-58.7517	0/1:198:103,95:103:3669:95:3271:-233.902,0,-270.809	0/1:73:24,49:24:851:49:1699:-131.217,0,-54.9343	0/0:47:47,0:47:1651:0:0:0,-14.1484,-148.874	0/0:131:128,3:128:4502:3:108:0,-29.3598,-395.273	0/0:105:105,0:105:3714:0:0:0,-31.6081,-334.438	0/0:192:192,0:192:6813:0:0:0,-57.7978,-613.229	0/1:89:43,46:43:1525:46:1590:-116.324,0,-110.749	0/1:113:75,38:75:2654:38:1318:-84.9009,0,-205.09	0/0:111:111,0:111:3944:0:0:0,-33.4143,-354.882	0/0:7:7,0:7:234:0:0:0,-2.10721,-21.386	0/0:204:204,0:204:7225:0:0:0,-61.4101,-650.307	0/1:76:38,38:38:1351:38:1343:-98.2911,0,-99.0113	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	0/1:193:92,101:92:3243:101:3470:-254.168,0,-233.993	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.793	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:97:36,61:36:1266:61:2072:-157.545,0,-85.0412	0/1:5:3,2:3:108:2:57:-3.90816,0,-8.57002	0/0:48:47,0:47:1672:0:0:0,-14.1484,-150.404	0/1:153:68,85:68:2409:85:2916:-216.388,0,-171.008	0/1:57:25,32:25:887:32:1093:-81.5118,0,-62.9894	0/0:144:144,0:144:5059:0:0:0,-43.3483,-455.437	0/1:145:77,68:77:2735:68:2362:-169.17,0,-202.513	0/1:115:24,91:24:856:91:3152:-249.286,0,-42.7427	0/1:51:19,32:19:672:32:1094:-83.4088,0,-45.4543	0/1:39:12,27:12:428:27:903:-69.8307,0,-27.1171	0/1:38:15,23:15:528:23:791:-59.8734,0,-36.4122	0/1:25:11,14:11:392:14:474:-35.4565,0,-28.0943	0/1:135:56,79:56:1972:79:2670:-199.9,0,-137.114	0/1:96:53,43:53:1873:43:1486:-105.105,0,-139.94	0/1:154:70,84:70:2474:84:2896:-214.5,0,-175.352	0/0:111:111,0:111:3949:0:0:0,-33.4143,-355.602	0/0:165:165,0:165:5885:0:0:0,-49.6699,-529.76	0/1:97:49,48:49:1756:48:1676:-121.924,0,-129.124	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:120:120,0:120:4280:0:0:0,-36.1236,-385.377	0/1:73:29,44:29:1031:44:1550:-117.787,0,-71.1274	0/1:189:87,102:87:3101:102:3539:-261.824,0,-222.418	0/1:49:20,29:20:708:29:995:-75.1054,0,-49.2951	0/0:55:55,0:55:1930:0:0:0,-16.5566,-173.976	0/1:42:13,29:13:455:29:1009:-78.4757,0,-28.6387	0/0:119:118,1:118:4194:1:36:0,-32.2243,-374.045	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5438	0/1:64:26,38:26:914:38:1286:-96.771,0,-63.3087	0/0:80:79,1:79:2794:1:36:0,-20.4841,-248.103	0/0:44:44,0:44:1539:0:0:0,-13.2453,-138.669	0/1:88:27,61:27:942:61:2059:-159.077,0,-58.281	0/1:103:27,76:27:940:76:2654:-208.055,0,-53.9047	0/0:11:11,0:11:368:0:0:0,-3.31133,-33.4411	0/0:61:60,1:60:2083:1:32:0,-15.1635,-184.536
chr09	199657	.	T	A	78013.2	PASS	AB=0.544687;ABP=52.3047;AC=134;AF=0.712766;AN=188;AO=3781;CIGAR=1X;DP=5081;DPB=5081;DPRA=13.6478;EPP=8213.35;EPPR=2819.41;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.5652;MQMR=59.4032;NS=94;NUMALT=1;ODDS=0.928741;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134826;QR=46461;RO=1297;RPL=0;RPP=8213.35;RPPR=2819.41;RPR=3781;RUN=1;SAF=0;SAP=8213.35;SAR=3781;SRF=0;SRP=2819.41;SRR=1297;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.524	1/1:31:0,31:0:0:31:1116:-100.614,-9.33193,0	1/1:48:0,48:0:0:48:1711:-154.228,-14.4494,0	1/1:84:0,84:0:0:84:3008:-270.738,-25.2865,0	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.4344	0/1:15:11,4:11:396:4:144:-8.7898,0,-31.4591	1/1:67:0,67:0:0:67:2374:-213.737,-20.169,0	1/1:59:0,59:0:0:59:2096:-188.901,-17.7608,0	0/1:57:26,31:26:932:31:1112:-83.1715,0,-67.0402	1/1:16:0,16:0:0:16:576:-52.1465,-4.81648,0	0/1:40:20,20:20:720:20:720:-53.069,0,-53.0814	0/1:101:45,56:45:1620:56:1977:-147.791,0,-115.678	0/1:66:33,33:33:1173:33:1184:-86.7138,0,-85.8092	1/1:53:0,53:0:0:53:1887:-170.08,-15.9546,0	0/1:58:28,30:28:1008:30:1076:-79.6869,0,-73.5766	0/1:43:25,18:25:900:18:648:-45.703,0,-68.3767	1/1:45:0,45:0:0:45:1588:-143.204,-13.5464,0	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	1/1:33:0,33:0:0:33:1176:-105.949,-9.93399,0	0/1:67:31,36:31:1112:36:1270:-94.4323,0,-79.3584	0/1:91:50,41:50:1777:41:1459:-104.199,0,-132.808	0/1:36:23,13:23:828:13:468:-31.6226,0,-63.9989	0/1:82:31,51:31:1095:51:1821:-138.543,0,-74.1684	0/1:35:9,26:9:324:26:936:-74.0234,0,-18.9698	1/1:45:0,45:0:0:45:1593:-143.518,-13.5464,0	0/1:125:49,76:49:1760:76:2693:-204.96,0,-121.031	0/1:141:57,84:57:2048:84:2992:-227.057,0,-141.983	0/1:34:17,17:17:612:17:603:-44.33,0,-45.1784	1/1:113:0,113:0:0:113:4024:-362.314,-34.0164,0	1/1:74:0,74:0:0:74:2636:-237.479,-22.2762,0	1/1:116:0,116:0:0:116:4136:-372.34,-34.9195,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:179:83,95:83:2988:95:3395:-251.849,0,-215.099	1/1:101:0,101:0:0:101:3611:-325.057,-30.404,0	0/1:48:25,23:25:900:23:828:-60.3783,0,-66.847	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:59:26,33:26:936:33:1156:-86.5805,0,-66.7941	0/1:26:13,13:13:468:13:468:-34.6236,0,-34.6154	0/1:59:20,39:20:720:39:1372:-106.004,0,-46.5832	0/1:64:32,32:32:1152:32:1144:-83.9974,0,-84.7118	1/1:71:0,71:0:0:71:2519:-226.775,-21.3731,0	1/1:53:0,53:0:0:53:1904:-171.608,-15.9546,0	1/1:51:0,50:0:0:50:1772:-159.401,-15.0515,0	1/1:98:0,98:0:0:98:3512:-316.268,-29.5009,0	0/1:35:14,21:14:500:21:748:-57.103,0,-34.7914	0/1:49:26,23:26:936:23:828:-60.0768,0,-69.7966	1/1:45:0,45:0:0:45:1611:-145.193,-13.5464,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:39:0,39:0:0:39:1388:-125.199,-11.7402,0	0/1:38:18,20:18:644:20:712:-52.9675,0,-46.8481	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:61:27,34:27:972:34:1220:-91.7215,0,-69.4351	1/1:14:0,14:0:0:14:491:-44.4973,-4.21442,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3052	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	1/1:48:0,48:0:0:48:1694:-152.738,-14.4494,0	0/1:94:39,55:39:1404:55:1964:-148.721,0,-98.3315	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:125:0,125:0:0:125:4486:-403.83,-37.6288,0	0/1:86:43,43:43:1548:43:1536:-112.638,0,-113.548	0/1:42:20,22:20:720:22:779:-57.7796,0,-52.4748	1/1:40:0,40:0:0:40:1413:-127.302,-12.0412,0	0/1:77:34,43:34:1205:43:1531:-114.903,0,-85.5721	0/1:54:35,19:35:1230:19:684:-45.6347,0,-94.7443	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.299	0/1:28:13,15:13:468:15:540:-40.4995,0,-34.0226	0/1:40:15,25:15:536:25:892:-68.5503,0,-36.4839	0/1:23:13,10:13:468:10:360:-25.8144,0,-35.5297	0/1:91:26,65:26:936:65:2317:-181.395,0,-57.0513	0/1:53:28,25:28:1008:25:888:-64.2844,0,-75.0736	0/1:86:21,65:21:756:65:2296:-180.992,0,-42.4786	1/1:78:0,78:0:0:78:2800:-252.221,-23.4803,0	1/1:31:0,31:0:0:31:1116:-100.727,-9.33193,0	0/1:49:23,26:23:809:26:927:-68.0573,0,-58.3356	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	0/1:25:10,15:10:360:15:536:-41.0491,0,-25.2186	0/1:80:37,43:37:1313:43:1530:-113.909,0,-94.2393	0/1:56:26,30:26:921:30:1067:-79.4773,0,-66.3351	1/1:72:0,72:0:0:72:2575:-231.974,-21.6742,0	0/1:36:14,21:14:500:21:747:-56.6246,0,-34.4349	1/1:118:0,118:0:0:118:4206:-378.281,-35.5215,0	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	0/1:61:33,28:33:1188:28:977:-69.869,0,-88.7514	1/1:69:0,69:0:0:69:2457:-221.358,-20.7711,0	1/1:38:0,38:0:0:38:1364:-123.056,-11.4391,0	0/1:92:41,51:41:1457:51:1820:-136.377,0,-103.534	0/1:56:28,28:28:989:28:1004:-73.812,0,-72.4643	1/1:99:0,99:0:0:99:3560:-320.594,-29.802,0	1/1:102:1,101:1:36:101:3587:-319.298,-27.1068,0
chr09	199679	.	A	G	81837.2	PASS	AB=0.555166;ABP=78.4794;AC=134;AF=0.712766;AN=188;AO=3855;CIGAR=1X;DP=5132;DPB=5132;DPRA=13.7849;EPP=7979.25;EPPR=2685.46;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.5769;MQMR=59.4471;NS=94;NUMALT=1;ODDS=1.89696;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137486;QR=45745;RO=1275;RPL=3809;RPP=7979.25;RPPR=2685.46;RPR=46;RUN=1;SAF=0;SAP=8374.04;SAR=3855;SRF=0;SRP=2771.64;SRR=1275;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:15,15:15:540:15:536:-39.5439,0,-39.5864	1/1:30:0,30:0:0:30:1067:-96.3141,-9.0309,0	1/1:50:0,50:0:0:50:1783:-160.71,-15.0515,0	1/1:87:0,87:0:0:87:3087:-277.846,-26.1896,0	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4356	0/1:15:11,4:11:396:4:144:-8.7898,0,-31.4591	1/1:66:0,66:0:0:66:2350:-211.733,-19.868,0	1/1:61:0,61:0:0:61:2145:-193.147,-18.3628,0	0/1:57:25,32:25:900:32:1140:-85.7025,0,-64.1623	1/1:19:0,19:0:0:19:672:-60.7783,-5.71957,0	0/1:40:20,20:20:720:20:714:-52.5318,0,-53.0814	0/1:103:45,58:45:1616:58:2052:-153.935,0,-114.716	0/1:65:32,33:32:1144:33:1179:-86.5637,0,-83.6072	1/1:54:0,54:0:0:54:1920:-173.023,-16.2556,0	0/1:59:28,31:28:1008:31:1103:-81.8128,0,-73.2756	0/1:43:25,18:25:896:18:640:-44.9804,0,-68.0161	1/1:45:0,45:0:0:45:1594:-143.713,-13.5464,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:33:0,33:0:0:33:1168:-105.411,-9.93399,0	0/1:65:29,36:29:1032:36:1274:-95.3945,0,-73.6203	0/1:94:50,44:50:1796:44:1551:-111.571,0,-133.616	0/1:34:21,13:21:756:13:460:-31.5004,0,-58.1322	0/1:82:29,53:29:1031:53:1900:-145.652,0,-68.3657	0/1:36:9,27:9:315:27:964:-76.2397,0,-17.8501	1/1:47:0,47:0:0:47:1679:-151.267,-14.1484,0	0/1:127:48,79:48:1720:79:2797:-213.707,0,-116.83	0/1:140:55,85:55:1976:85:3031:-230.863,0,-135.836	0/1:34:17,17:17:608:17:600:-44.0518,0,-44.817	1/1:112:0,112:0:0:112:4015:-361.326,-33.7154,0	1/1:78:0,78:0:0:78:2776:-250.073,-23.4803,0	1/1:114:0,114:0:0:114:4068:-366.293,-34.3174,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:181:83,98:83:2984:98:3511:-261.691,0,-214.16	1/1:103:0,103:0:0:103:3674:-330.722,-31.0061,0	0/1:49:25,24:25:900:24:854:-62.4116,0,-66.546	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:58:27,31:27:972:31:1112:-82.9131,0,-70.3336	0/1:27:12,15:12:432:15:536:-40.4378,0,-31.0759	0/1:60:20,40:20:712:40:1430:-110.922,0,-45.5601	0/1:64:31,33:31:1116:33:1171:-86.4234,0,-81.4734	1/1:70:0,70:0:0:70:2509:-225.918,-21.0721,0	1/1:54:0,54:0:0:54:1936:-174.491,-16.2556,0	1/1:54:0,54:0:0:54:1916:-172.715,-16.2556,0	1/1:98:0,98:0:0:98:3508:-315.909,-29.5009,0	0/1:39:15,24:15:540:24:852:-65.254,0,-37.1839	0/1:48:25,23:25:892:23:824:-60.017,0,-66.1379	1/1:45:0,45:0:0:45:1607:-144.827,-13.5464,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:40:0,40:0:0:40:1428:-128.731,-12.0412,0	0/1:39:18,21:18:648:21:748:-55.9051,0,-46.9084	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:61:26,35:26:936:35:1252:-94.5998,0,-66.1966	1/1:14:0,14:0:0:14:496:-44.8598,-4.21442,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3052	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:49:0,49:0:0:49:1752:-157.96,-14.7505,0	0/1:94:38,56:38:1364:56:2002:-152.142,0,-94.7392	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:125:0,125:0:0:125:4461:-401.586,-37.6288,0	0/1:87:41,46:41:1472:46:1644:-122.051,0,-106.497	0/1:42:20,22:20:720:22:777:-57.603,0,-52.4748	1/1:43:0,42:0:0:42:1486:-133.388,-12.6433,0	0/1:76:33,43:33:1180:43:1531:-115.204,0,-83.6273	0/1:54:36,18:36:1292:18:648:-42.3963,0,-100.328	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.9353	0/1:27:12,15:12:428:15:540:-40.8005,0,-30.7228	0/1:40:15,25:15:540:25:888:-68.1896,0,-36.8456	0/1:23:13,10:13:468:10:360:-25.8144,0,-35.5297	0/1:93:26,67:26:936:67:2385:-186.896,0,-56.5555	0/1:52:27,25:27:968:25:900:-65.6675,0,-71.7838	0/1:83:21,62:21:756:62:2204:-173.616,0,-43.3817	1/1:78:0,78:0:0:78:2804:-252.581,-23.4803,0	1/1:33:0,33:0:0:33:1176:-106.125,-9.93399,0	0/1:49:22,27:22:792:27:960:-71.9658,0,-56.8267	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	0/1:26:11,15:11:387:15:540:-41.1098,0,-27.3381	0/1:80:36,44:36:1296:44:1584:-118.769,0,-92.5852	0/1:55:24,31:24:864:31:1112:-83.8223,0,-61.5197	1/1:72:0,72:0:0:72:2588:-233.144,-21.6742,0	0/1:37:15,22:15:536:22:792:-60.4329,0,-37.4181	1/1:120:0,120:0:0:120:4261:-383.221,-36.1236,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:59:31,28:31:1112:28:980:-70.738,0,-82.5162	1/1:71:0,70:0:0:70:2495:-224.236,-21.0721,0	1/1:39:0,39:0:0:39:1404:-126.655,-11.7402,0	0/1:94:41,53:41:1472:53:1895:-142.526,0,-104.104	0/1:60:30,30:30:1072:30:1076:-79.0849,0,-78.7307	1/1:104:0,104:0:0:104:3709:-333.988,-31.3071,0	1/1:103:1,102:1:36:102:3623:-322.629,-27.4078,0
chr09	250029	.	A	T	107715	PASS	AB=0.506842;ABP=6.87324;AC=53;AF=0.281915;AN=188;AO=4859;CIGAR=1X;DP=17539;DPB=17539;DPRA=1.6254;EPP=10554.2;EPPR=27537.3;GTI=1;LEN=1;MEANALT=1;MQM=53.6668;MQMR=56.2737;NS=94;NUMALT=1;ODDS=3.07125;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173810;QR=453337;RO=12680;RPL=2352;RPP=13.747;RPPR=2743.04;RPR=2507;RUN=1;SAF=2507;SAP=13.747;SAR=2352;SRF=8340;SRP=2743.04;SRR=4340;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:49,34:49:1760:34:1220:-85.1085,0,-133.455	0/0:139:139,0:139:4976:0:0:0,-41.8432,-447.9	0/0:470:469,1:469:16750:1:36:0,-137.891,-1502.79	0/0:514:512,2:512:18325:2:72:0,-148.178,-1621.9	0/1:160:71,89:71:2552:89:3176:-237.898,0,-181.275	0/1:117:52,65:52:1853:65:2332:-174.919,0,-131.827	0/0:243:243,0:243:8696:0:0:0,-73.1503,-773.543	0/0:413:411,2:411:14737:2:72:0,-117.494,-1317.57	0/1:210:109,101:109:3916:101:3616:-262.425,0,-289.264	0/0:183:182,1:182:6528:1:36:0,-51.4912,-573.998	0/1:74:37,37:37:1317:37:1328:-95.5235,0,-96.1877	0/1:134:58,76:58:2080:76:2728:-205.398,0,-146.998	0/1:133:55,78:55:1950:78:2785:-210.04,0,-135.686	0/0:98:98,0:98:3520:0:0:0,-29.5009,-316.579	0/1:81:44,37:44:1584:37:1324:-92.1655,0,-117.054	0/1:86:43,43:43:1525:43:1544:-113.347,0,-111.624	0/0:65:65,0:65:2309:0:0:0,-19.5669,-207.357	0/0:56:55,1:55:1980:1:36:0,-13.2645,-174.881	0/0:55:54,1:54:1944:1:36:0,-12.9635,-171.502	0/1:439:225,214:225:8064:214:7650:-524.256,0,-583.568	0/1:278:127,151:127:4528:151:5396:-401.989,0,-323.854	0/1:294:96,198:96:3444:198:7092:-521.756,0,-216.941	0/1:122:63,59:63:2264:59:2101:-140.553,0,-164.033	0/1:215:105,110:105:3757:110:3933:-289.437,0,-273.59	0/0:123:122,1:122:4353:1:36:0,-33.4284,-388.305	0/1:572:334,238:334:11934:238:8509:-556.359,0,-877.702	0/1:417:279,138:279:9990:138:4925:-317.866,0,-773.186	0/1:40:15,25:15:540:25:900:-69.255,0,-36.8953	0/0:585:582,3:582:20812:3:108:0,-166.027,-1848.13	0/0:323:322,1:322:11509:1:36:0,-93.637,-1030.52	0/0:184:181,3:181:6465:3:104:0,-45.6867,-564.85	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.448	0/0:39:38,1:38:1364:1:36:0,-8.14449,-119.435	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5408	0/1:21:12,9:12:420:9:324:-23.1842,0,-31.8124	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.986	0/1:203:90,113:90:3221:113:4052:-292.434,0,-224.496	0/0:299:299,0:299:10713:0:0:0,-90.008,-963.68	0/1:75:43,32:43:1536:32:1144:-80.6877,0,-115.766	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.2129	0/1:360:166,194:166:5948:194:6898:-512.513,0,-426.928	0/1:39:13,26:13:468:26:936:-72.8146,0,-30.7195	0/1:337:186,151:186:6656:151:5375:-382.432,0,-497.453	0/1:75:34,41:34:1224:41:1472:-105.876,0,-87.4334	0/0:87:86,1:86:3039:1:32:0,-22.9907,-267.974	0/0:236:236,0:236:8444:0:0:0,-71.0431,-752.157	0/0:286:286,0:286:10226:0:0:0,-86.0946,-920.119	0/0:451:450,1:450:16082:1:36:0,-132.167,-1418.87	0/1:195:90,105:90:3228:105:3756:-261.903,0,-227.83	0/1:323:178,145:178:6380:145:5204:-352.855,0,-469.289	0/0:293:288,5:288:10301:5:180:0,-71.6497,-899.275	0/1:27:24,3:24:856:3:104:-1.57274,0,-66.576	0/0:278:277,1:277:9928:1:36:0,-80.0932,-889.68	0/1:161:77,84:77:2752:84:3012:-214.867,0,-197.81	0/1:21:14,7:14:500:7:252:-16.7073,0,-39.0145	0/1:231:112,119:112:4001:119:4268:-314.747,0,-290.667	0/0:55:55,0:55:1953:0:0:0,-16.5566,-173.113	0/1:14:8,6:8:284:6:216:-14.7532,0,-21.428	0/0:35:35,0:35:1222:0:0:0,-10.536,-107.548	0/0:174:174,0:174:6224:0:0:0,-52.3792,-560.02	0/1:138:54,84:54:1940:84:3008:-219.662,0,-131.751	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.756	0/0:334:332,2:332:11876:2:72:0,-93.9916,-1048.51	0/1:457:220,237:220:7885:237:8473:-595.06,0,-563.314	0/1:167:105,62:105:3742:62:2232:-150.87,0,-286.598	0/0:160:160,0:160:5725:0:0:0,-48.1648,-514.213	0/1:288:127,161:127:4544:161:5772:-411.459,0,-315.714	0/1:335:107,228:107:3821:228:8127:-594.042,0,-240.418	0/1:52:30,22:30:1076:22:792:-55.9521,0,-80.9659	0/1:142:62,80:62:2220:80:2860:-214.892,0,-157.318	0/1:81:39,42:39:1404:42:1497:-106.231,0,-100.099	0/1:43:21,22:21:748:22:788:-57.0064,0,-54.2175	0/1:248:156,92:156:5569:92:3288:-221.48,0,-426.092	0/1:161:94,67:94:3342:67:2377:-165.698,0,-252.435	0/1:338:167,171:167:5976:171:6128:-449.851,0,-434.57	0/0:285:285,0:285:10221:0:0:0,-85.7935,-909.038	0/0:466:465,1:465:16328:1:36:0,-136.682,-1464.73	0/1:197:107,90:107:3813:90:3232:-231.794,0,-283.759	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:228:221,7:221:7921:7:252:0,-45.6059,-689.8	0/1:285:158,127:158:5588:127:4527:-321.798,0,-416.424	0/1:547:214,333:214:7660:333:11921:-856.291,0,-515.08	0/1:115:61,54:61:2177:54:1936:-132.13,0,-157.999	0/0:87:87,0:87:3124:0:0:0,-26.1896,-280.136	0/1:75:31,44:31:1101:44:1584:-115.017,0,-75.8652	0/0:115:112,3:112:4012:3:108:0,-24.5461,-347.622	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.337	0/1:71:28,43:28:1004:43:1536:-117.152,0,-69.3012	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.419	0/0:71:69,2:69:2484:2:72:0,-14.5413,-216.887	0/1:128:64,64:64:2292:64:2292:-168.005,0,-167.526	0/1:78:21,57:21:756:57:2040:-155.322,0,-44.6565	0/0:285:283,2:283:10156:2:72:0,-78.9587,-892.711	0/0:121:119,2:119:4272:2:72:0,-29.5889,-373.33
chr09	250083	.	ATTCG	TTTCA,TTTCG	555801	PASS	AB=0.548825,0.446649;ABP=218.024,259.736;AC=135,53;AF=0.718085,0.281915;AN=188;AO=15888,4664;CIGAR=1X3M1X,1X4M;DP=20621;DPB=20628.4;DPRA=0,1.05444;EPP=34503.4,10130.8;EPPR=9.52472;GTI=3;LEN=5,1;MEANALT=2.34043,2.78462;MQM=59.535,59.9007;MQMR=54;NS=94;NUMALT=2;ODDS=4.21356;PAIRED=0,0;PAIREDR=0;PAO=15,14;PQA=460,424;PQR=0;PRO=0;QA=557516,166569;QR=85;RO=3;RPL=8512,2483;RPP=179.387,45.4732;RPPR=9.52472;RPR=7376,2181;RUN=1,1;SAF=8512,2483;SAP=179.387,45.4732;SAR=7376,2181;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:89:0,45,44:0:0:45,44:1570,1584:-256.996,-129.464,-115.917,-127.887,0,-114.641	1/1:200:0,200,0:0:0:200,0:7011,0:-631.022,-60.206,0,-631.022,-60.206,-631.022	1/1:513:0,513,0:0:0:513,0:18002,0:-1619.21,-154.428,0,-1619.21,-154.428,-1619.21	1/1:541:0,537,3:0:0:537,3:18800,108:-1690.77,-161.653,0,-1681.96,-152.841,-1681.05	1/2:133:0,86,47:0:0:86,47:3035,1679:-384.055,-137.246,-111.357,-247.165,0,-233.016	1/2:119:0,64,54:0:0:64,54:2248,1931:-340.55,-157.588,-138.322,-183.094,0,-166.838	1/1:309:0,308,1:0:0:308,1:10770,36:-968.715,-92.7172,0,-965.778,-89.42,-965.477	1/1:577:0,574,1:0:0:574,1:20129,36:-1809.5,-172.791,0,-1806.56,-169.849,-1806.26	1/2:233:0,138,95:0:0:138,95:4790,3386:-665.573,-276.351,-234.809,-389.574,0,-360.976	1/1:245:0,245,0:0:0:245,0:8649,0:-778.097,-73.7524,0,-778.097,-73.7524,-778.097	1/2:111:0,66,44:0:0:66,44:2311,1580:-316.959,-128.974,-109.106,-188.067,0,-174.822	1/2:193:0,92,101:0:0:92,101:3208,3620:-556.343,-295.579,-267.884,-261.117,0,-230.713	1/2:166:0,80,86:0:0:80,86:2832,3075:-481.426,-250.797,-226.715,-230.984,0,-205.095	1/1:152:0,152,0:0:0:152,0:5311,0:-478.015,-45.7566,0,-478.015,-45.7566,-478.015	1/2:127:0,69,56:0:0:69,56:2424,1978:-358.363,-161.126,-140.355,-197.283,0,-180.425	1/2:122:0,73,48:0:0:73,48:2571,1716:-349.345,-140.062,-118.087,-209.434,0,-194.984	1/1:164:0,164,0:0:0:164,0:5803,0:-521.784,-49.3689,0,-521.784,-49.3689,-521.784	1/1:129:0,129,0:0:0:129,0:4547,0:-409.397,-38.8329,0,-409.397,-38.8329,-409.397	1/1:84:0,84,0:0:0:84,0:2953,0:-265.915,-25.2865,0,-265.915,-25.2865,-265.915	1/2:411:0,228,181:0:0:228,181:7989,6487:-1179,-529.006,-460.371,-649.932,0,-595.446	1/2:347:0,172,171:0:0:172,171:6020,6108:-987.684,-497.984,-446.207,-489.737,0,-438.261	1/2:378:0,146,230:0:0:146,230:5142,8212:-1088.15,-669.544,-625.594,-418.653,0,-349.416	1/2:122:0,65,57:0:0:65,57:2287,2052:-353.887,-167.793,-148.226,-186.451,0,-169.292	1/2:136:0,84,51:0:0:84,51:2966,1814:-389.413,-147.884,-122.598,-241.582,0,-226.23	1/1:148:0,148,0:0:0:148,0:5129,0:-461.586,-44.5524,0,-461.586,-44.5524,-461.586	1/2:536:0,326,208:0:0:326,208:11451,7456:-1539.75,-608.014,-509.878,-931.755,0,-869.141	1/2:486:0,340,145:0:0:340,145:11941,5175:-1393.44,-421.875,-319.525,-971.556,0,-927.906	1/2:62:0,22,39:0:0:22,39:784,1396:-177.744,-113.839,-107.217,-63.9023,0,-52.1621	1/1:772:0,770,0:0:0:770,0:27034,0:-2431.79,-231.793,0,-2431.79,-231.793,-2431.79	1/1:373:0,371,0:0:0:371,0:13015,0:-1170.06,-111.682,0,-1170.06,-111.682,-1170.06	1/1:204:0,198,6:0:0:198,6:6942,216:-624.416,-59.6039,0,-606.792,-41.6196,-604.985	1/1:18:0,18,0:0:0:18,0:642,0:-58.1102,-5.41854,0,-58.1102,-5.41854,-58.1102	1/1:49:0,49,0:0:0:49,0:1703,0:-153.524,-14.7505,0,-153.524,-14.7505,-153.524	1/2:9:0,8,1:0:0:8,1:268,36:-24.9765,-3.29724,-0.889005,-22.0363,0,-21.7353	1/2:27:0,13,14:0:0:13,14:459,504:-78.8587,-41.4837,-37.5703,-37.7313,0,-33.5169	1/1:36:0,36,0:0:0:36,0:1264,0:-114.018,-10.8371,0,-114.018,-10.8371,-114.018	1/2:334:0,183,149:0:0:183,149:6428,5309:-955.797,-432.711,-377.622,-523.096,0,-478.242	1/1:396:0,396,0:0:0:396,0:13964,0:-1256.28,-119.208,0,-1256.28,-119.208,-1256.28	1/2:106:0,68,37:0:0:68,37:2388,1316:-301.471,-107.244,-86.7744,-194.221,0,-183.083	1/2:11:0,3,7:0:0:3,7:108,252:-29.3971,-20.584,-19.6809,-8.83116,0,-6.72395	1/2:248:0,118,130:0:0:118,130:4136,4609:-712.298,-375.838,-340.317,-336.812,0,-297.678	1/2:63:0,34,29:0:0:34,29:1216,1040:-184.334,-85.1821,-74.9471,-99.5098,0,-90.7799	1/2:333:0,189,144:0:0:189,144:6609,5150:-957.555,-420.171,-363.277,-537.618,0,-494.27	1/2:105:0,65,40:0:0:65,40:2297,1432:-304.155,-117.119,-97.5518,-187.392,0,-175.351	1/1:132:0,132,0:0:0:132,0:4614,0:-415.208,-39.736,0,-415.208,-39.736,-415.208	1/1:251:0,250,1:0:0:250,1:8772,36:-789.01,-75.2575,0,-786.072,-71.9603,-785.771	1/1:341:0,340,0:0:0:340,0:12009,0:-1080.29,-102.35,0,-1080.29,-102.35,-1080.29	1/1:486:0,482,1:0:0:482,1:16849,36:-1514.56,-145.096,0,-1511.62,-142.142,-1511.32	1/2:216:0,108,107:0:0:108,107:3774,3836:-619.776,-312.867,-280.356,-306.905,0,-274.695	1/2:308:0,183,125:0:0:183,125:6455,4463:-889.48,-364.034,-308.946,-525.682,0,-488.053	1/1:384:0,383,0:0:0:383,0:13450,0:-1209.9,-115.294,0,-1209.9,-115.294,-1209.9	1/1:28:0,27,0:0:0:27,0:950,0:-85.4375,-8.12781,0,-85.4375,-8.12781,-85.4375	1/1:328:0,327,0:0:0:327,0:11490,0:-1033.49,-98.4368,0,-1033.49,-98.4368,-1033.49	1/2:154:0,68,86:0:0:68,86:2348,3047:-439.32,-248.57,-228.1,-191.099,0,-165.211	1/2:12:0,9,3:0:0:9,3:314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chr09	250122	.	A	G	155036	PASS	AB=0.544573;ABP=84.8943;AC=135;AF=0.718085;AN=188;AO=7355;CIGAR=1X;DP=9532;DPB=9532;DPRA=0;EPP=15948.1;EPPR=4699.92;GTI=3;LEN=1;MEANALT=1.06383;MQM=59.8113;MQMR=59.9871;NS=94;NUMALT=1;ODDS=1.04221;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262922;QR=77879;RO=2171;RPL=7352;RPP=15948.1;RPPR=4699.92;RPR=3;RUN=1;SAF=0;SAP=15974.2;SAR=7355;SRF=0;SRP=4717.28;SRR=2171;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:21,10:21:743:10:360:-23.4124,0,-57.8614	1/1:145:0,145:0:0:145:5156:-464.182,-43.6494,0	1/1:112:0,112:0:0:112:4028:-362.699,-33.7154,0	1/1:218:1,217:1:27:217:7756:-695.338,-62.9248,0	0/1:71:23,48:23:828:48:1713:-133.081,0,-53.471	0/1:58:21,37:21:744:37:1324:-102.001,0,-49.8246	1/1:153:0,153:0:0:153:5467:-492.051,-46.0576,0	1/1:316:0,316:0:0:316:11290:-1015.97,-95.1255,0	0/1:116:49,67:49:1748:67:2367:-178.349,0,-122.683	1/1:144:0,144:0:0:144:5158:-464.217,-43.3483,0	0/1:45:15,30:15:536:30:1076:-83.6042,0,-35.0285	0/1:92:47,45:47:1692:45:1611:-117.584,0,-124.872	0/1:64:30,34:30:1072:34:1215:-90.3866,0,-77.5265	1/1:83:0,83:0:0:83:2972:-267.704,-24.9855,0	0/1:68:31,37:31:1116:37:1332:-99.71,0,-80.2817	0/1:48:16,32:16:576:32:1148:-89.1773,0,-37.7255	1/1:111:0,111:0:0:111:3971:-357.572,-33.4143,0	1/1:92:0,92:0:0:92:3283:-295.686,-27.6948,0	1/1:35:0,35:0:0:35:1256:-113.343,-10.5361,0	0/1:197:96,101:96:3447:101:3606:-265.436,0,-251.138	0/1:160:73,87:73:2620:87:3104:-231.404,0,-187.882	0/1:230:138,92:138:4960:92:3289:-226.984,0,-377.31	0/1:68:37,31:37:1324:31:1102:-79.0139,0,-98.9921	0/1:37:5,32:5:180:32:1139:-91.6789,0,-5.41395	1/1:71:0,71:0:0:71:2531:-228.035,-21.3731,0	0/1:278:104,174:104:3724:174:6203:-474.671,0,-251.448	0/1:182:69,112:69:2480:112:3986:-304.075,0,-168.607	0/1:35:23,12:23:828:12:432:-28.6851,0,-64.3081	1/1:305:0,305:0:0:305:10873:-978.44,-91.8142,0	1/1:170:0,170:0:0:170:6102:-549.268,-51.1751,0	1/1:93:4,89:4:144:89:3175:-272.656,-14.6822,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:5:1,4:1:36:4:138:-11.2544,0,-2.09312	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:188:79,108:79:2840:108:3863:-291.207,0,-199.185	1/1:227:0,227:0:0:227:8129:-731.612,-68.3338,0	0/1:45:17,28:17:612:28:1008:-77.4873,0,-41.8671	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:94:57,37:57:2044:37:1309:-89.8112,0,-155.935	0/1:32:9,23:9:320:23:828:-65.2112,0,-19.5094	0/1:139:69,70:69:2464:70:2504:-183.698,0,-180.171	0/1:49:18,31:18:648:31:1112:-85.6409,0,-43.9014	1/1:67:0,67:0:0:67:2385:-214.897,-20.169,0	1/1:73:1,71:1:36:71:2543:-225.519,-18.4357,0	1/1:195:0,195:0:0:195:6962:-626.641,-58.7009,0	1/1:235:0,235:0:0:235:8400:-755.961,-70.7421,0	0/1:123:68,55:68:2444:55:1950:-138.745,0,-183.188	0/1:124:48,76:48:1724:76:2719:-207.62,0,-118.118	1/1:190:0,190:0:0:190:6799:-611.956,-57.1957,0	1/1:10:0,10:0:0:10:352:-31.9937,-3.0103,0	1/1:138:0,137:0:0:137:4908:-441.485,-41.2411,0	0/1:39:32,7:32:1148:7:252:-11.2888,0,-91.8897	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:148:77,70:77:2764:70:2512:-181.708,0,-204.39	1/1:52:2,50:2:72:50:1800:-155.441,-8.81684,0	0/1:12:7,5:7:252:5:171:-12.1131,0,-19.4166	1/1:35:0,35:0:0:35:1248:-112.623,-10.5361,0	1/1:100:0,100:0:0:100:3574:-321.791,-30.103,0	0/1:89:33,56:33:1188:56:2012:-154.554,0,-80.4369	0/1:8:4,4:4:144:4:132:-9.79634,0,-10.9054	1/1:210:1,209:1:36:209:7453:-667.194,-59.618,0	0/1:227:79,148:79:2840:148:5292:-408.06,0,-187.504	0/1:40:18,22:18:648:22:788:-59.2036,0,-46.6107	1/1:125:0,125:0:0:125:4475:-402.91,-37.6288,0	0/1:111:57,54:57:2040:54:1936:-141.099,0,-150.458	0/1:95:66,29:66:2360:29:1036:-64.9537,0,-184.061	0/1:40:20,20:20:720:20:720:-53.086,0,-53.0876	0/1:75:30,45:30:1080:45:1599:-121.622,0,-74.936	0/1:56:14,42:14:504:42:1508:-119.155,0,-28.8404	0/1:23:7,16:7:252:16:576:-45.2489,0,-16.1053	0/1:121:73,48:73:2624:48:1702:-117.037,0,-199.982	0/1:83:35,48:35:1239:48:1720:-130.099,0,-86.8282	0/1:145:68,77:68:2432:77:2736:-202.83,0,-175.486	1/1:164:0,164:0:0:164:5874:-528.745,-49.3689,0	1/1:191:0,191:0:0:191:6810:-612.97,-57.4967,0	0/1:153:49,104:49:1764:104:3697:-286.873,0,-112.986	1/1:15:0,15:0:0:15:539:-48.8399,-4.51545,0	1/1:142:2,139:2:72:139:4973:-440.878,-35.9417,0	0/1:152:94,58:94:3380:58:2080:-141.712,0,-258.658	0/1:208:81,127:81:2912:127:4553:-347.308,0,-199.7	0/1:76:26,50:26:936:50:1800:-139.379,0,-61.6812	1/1:65:0,65:0:0:65:2331:-210.04,-19.567,0	0/1:82:25,57:25:900:57:2036:-158.815,0,-56.6366	1/1:138:1,137:1:36:137:4911:-438.523,-37.9439,0	1/1:46:0,46:0:0:46:1655:-149.236,-13.8474,0	0/1:52:22,30:22:788:30:1080:-81.8269,0,-55.5912	1/1:77:0,77:0:0:77:2761:-248.704,-23.1793,0	1/1:36:0,36:0:0:36:1296:-116.939,-10.8371,0	0/1:49:21,28:21:747:28:1006:-76.1036,0,-52.8038	0/1:58:41,17:41:1472:17:612:-37.9537,0,-115.316	1/1:72:0,72:0:0:72:2564:-230.984,-21.6742,0	1/1:107:1,106:1:36:106:3800:-338.451,-28.6119,0
chr09	284758	.	CTTTCTCTTTTTCA	CTTTTTCTTTTTCA,CTCTCTTTTTCA	247454	PASS	AB=0.504152,0.170365;ABP=7.12197,15570.1;AC=92,17;AF=0.489362,0.0904255;AN=188;AO=13841,2810;CIGAR=4M1X9M,1M2D11M;DP=27454;DPB=27047.5;DPRA=0,0;EPP=30058.4,6104.85;EPPR=22699.2;GTI=11;LEN=1,2;MEANALT=4.71277,5;MQM=59.986,59.7861;MQMR=59.9919;NS=94;NUMALT=2;ODDS=4.08686;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.333333;PQA=4.66667,4.66667;PQR=4.66667;PRO=0.333333;QA=495818,99628;QR=368910;RO=10456;RPL=0,0;RPP=30058.4,6104.85;RPPR=22699.2;RPR=13841,2810;RUN=1,1;SAF=13841,2810;SAP=30058.4,6104.85;SAR=0,0;SRF=10456;SRP=22707.9;SRR=0;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	0/1:128:43,80,5:43:1510:80,5:2841,165:-218.57,0,-98.8349,-218.177,-109.581,-339.569	0/1:565:310,251,0:310:10988:251,0:8995,0:-640.318,0,-819.638,-733.638,-895.197,-1628.8	0/1:417:207,203,0:207:7295:203,0:7265,0:-530.127,0,-532.845,-592.44,-593.954,-1186.39	0/1:650:327,314,2:327:11561:314,2:11226,72:-816.899,0,-847.07,-909.46,-935.719,-1850.46	0/1:343:117,185,37:117:4117:185,37:6609,1316:-503.624,0,-279.458,-431.599,-227.903,-755.61	0/1:373:84,226,55:84:2950:226,55:8105,1942:-635.79,0,-172.068,-503.024,-82.0453,-726.566	0/1:297:137,153,0:137:4833:153,0:5480,0:-405.689,0,-347.496,-446.93,-393.554,-840.469	0/1:746:408,326,3:408:14336:326,3:11692,108:-830.83,0,-1068.73,-944.838,-1158.05,-2110.8	0/1:374:120,182,70:120:4237:182,70:6490,2496:-492.918,0,-290.254,-325.576,-141.575,-649.545	0/1:399:204,188,0:204:7172:188,0:6728,0:-487.252,0,-527.211,-548.662,-583.805,-1132.45	1/2:95:18,58,19:18:620:58,19:2079,676:-168.89,-4.74485,-37.6385,-119.217,0,-163.853	1/2:154:28,82,40:28:996:82,40:2944,1428:-266.967,-35.2439,-91.7293,-158.984,0,-228.112	1/2:162:35,88,37:35:1232:88,37:3164,1324:-255.267,-7.66869,-81.4714,-157.845,0,-247.001	0/1:143:67,73,0:67:2379:73,0:2611,0:-192.78,0,-171.913,-212.949,-193.888,-406.794	1/2:147:37,69,39:37:1325:69,39:2484,1400:-197.688,-6.14344,-93.4286,-94.6269,0,-190.943	0/1:109:34,47,26:34:1203:47,26:1669,915:-125.761,0,-83.8413,-61.5105,-23.5033,-151.671	0/1:159:74,81,0:74:2621:81,0:2900,0:-214.216,0,-189.12,-236.493,-213.503,-450	0/1:111:51,58,0:51:1799:58,0:2088,0:-155.018,0,-129.006,-170.37,-146.466,-316.84	0/1:53:28,24,0:28:992:24,0:864,0:-62.0692,0,-73.5812,-70.498,-80.806,-151.306	0/1:739:190,398,149:190:6721:398,149:14245,5232:-1104.45,0,-427.621,-735.859,-121.644,-1238.43	1/2:506:134,205,161:134:4733:205,161:7312,5700:-634.534,-78.8427,-402.578,-210.585,0,-547.564	0/1:374:68,243,60:68:2405:243,60:8704,2148:-689.373,0,-122.733,-534.682,-20.7209,-712.505	0/1:291:101,144,44:101:3546:144,44:5176,1568:-391.87,0,-245.25,-294.469,-160.791,-569.821	0/1:330:95,190,43:95:3356:190,43:6798,1502:-525.745,0,-216.118,-432.17,-151.14,-692.535	0/1:321:166,152,0:166:5869:152,0:5459,0:-395.364,0,-432.26,-445.335,-478.017,-923.339	0/1:931:259,523,132:259:9091:523,132:18745,4643:-1450.59,0,-582.435,-1150.66,-361.984,-1850.8	0/1:684:225,323,125:225:7922:323,125:11557,4468:-874.679,0,-547.705,-578.167,-280.692,-1185.48	1/2:82:19,40,23:19:665:40,23:1436,810:-123.255,-11.8331,-53.8958,-63.0418,0,-110.22	0/1:832:431,388,0:431:15229:388,0:13912,0:-1004.97,0,-1123.49,-1134.72,-1240.29,-2374.98	0/1:331:168,152,0:168:5908:152,0:5444,0:-393.402,0,-435.16,-443.975,-480.917,-924.889	0/1:353:150,198,1:150:5280:198,1:7093,36:-533.309,0,-370.23,-575.526,-426.896,-1005.06	0/1:8:5,3,0:5:175:3,0:100,0:-6.9222,0,-13.6853,-8.42735,-14.5884,-22.6762	0/1:14:10,4,0:10:358:4,0:144,0:-9.0992,0,-28.3485,-12.1095,-29.5526,-41.3028	0/2:19:5,1,13:5:179:1,13:36,468:-36.6813,-35.249,-49.5448,0,-11.658,-10.6824	1/2:12:3,4,5:3:108:4,5:144,176:-16.3579,-5.50779,-13.1189,-2.93742,0,-10.2445	0/1:8:4,4,0:4:142:4,0:144,0:-10.9054,0,-10.721,-12.1095,-11.9252,-23.6773	0/1:445:132,191,116:132:4676:191,116:6863,4148:-520.145,0,-323.419,-221.925,-42.9582,-567.921	0/1:721:381,331,0:381:13477:331,0:11868,0:-853.282,0,-998.045,-967.975,-1097.69,-2065.66	1/2:131:30,69,31:30:1057:69,31:2480,1103:-197.092,-3.79789,-69.0837,-116.271,0,-192.996	0/1:17:6,11,0:6:213:11,0:396,0:-30.8652,0,-14.3989,-32.6714,-17.7102,-50.0251	0/1:371:101,219,48:101:3565:219,48:7827,1720:-607.777,0,-224.381,-497.903,-150.027,-773.759	0/1:60:14,32,13:14:501:32,13:1152,468:-89.783,0,-31.2208,-55.8137,-2.66912,-92.7544	0/1:620:144,422,50:144:5083:422,50:15122,1745:-1189.96,0,-286.891,-1091.39,-272.002,-1490.26	0/1:396:108,199,87:108:3768:199,87:7144,3071:-550.244,0,-246.562,-333.188,-56.8963,-613.464	0/1:154:84,67,0:84:2957:67,0:2408,0:-171.174,0,-220.565,-196.46,-240.734,-437.185	0/1:260:130,129,0:130:4579:129,0:4605,0:-336.346,0,-334.015,-375.48,-372.848,-748.275	0/1:498:257,239,0:257:9017:239,0:8576,0:-622.192,0,-661.894,-699.556,-733.84,-1433.37	0/1:700:367,322,0:367:12878:322,0:11543,0:-830.973,0,-951.118,-941.451,-1048.05,-1989.5	0/1:333:85,201,45:85:3009:201,45:7212,1608:-562.68,0,-184.595,-457.161,-113.994,-688.717	0/1:398:119,182,92:119:4175:182,92:6532,3288:-496.993,0,-284.977,-264.728,-71.6736,-576.798	0/1:404:165,232,0:165:5810:232,0:8320,0:-628.99,0,-403.08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chr09	284791	.	GTTTTCGA	GTTTACGA,CTTTACGA	573549	PASS	AB=0.777794,0.208724;ABP=9299.86,10224.2;AC=138,50;AF=0.734043,0.265957;AN=188;AO=23981,2963;CIGAR=4M1X3M,1X3M1X3M;DP=27294;DPB=27294.8;DPRA=0,1.05633;EPP=52068.4,6428.4;EPPR=7.35324;GTI=10;LEN=1,8;MEANALT=4.55319,5.08197;MQM=59.9956,59.7762;MQMR=60;NS=94;NUMALT=2;ODDS=4031.75;PAIRED=0,0;PAIREDR=0;PAO=0.333333,12.3333;PQA=12,156;PQR=12;PRO=0.333333;QA=858734,103226;QR=62;RO=2;RPL=23980,2962;RPP=52068.4,6428.4;RPPR=7.35324;RPR=1,1;RUN=1,1;SAF=23981,2963;SAP=52077.1,6437.08;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:129:0,120,6:0:0:120,6:4308,205:-387.566,-36.1236,0,-371.089,-19.6215,-369.282	1/1:558:0,551,0:0:0:551,0:19746,0:-1776.36,-165.868,0,-1776.36,-165.868,-1776.36	1/1:413:1,404,0:1:26:404,0:14474,0:-1299.78,-119.581,0,-1300.08,-121.616,-1302.12	1/1:637:0,630,1:0:0:630,1:22522,36:-2026.07,-189.649,0,-2023.13,-186.705,-2022.83	1/2:335:0,295,37:0:0:295,37:10540,1313:-966.382,-107.023,-18.2193,-859.403,0,-848.265	1/2:373:1,311,57:1:36:311,57:11121,1971:-1063.78,-157.267,-66.5847,-903.933,0,-889.712	1/1:294:0,291,0:0:0:291,0:10412,0:-936.701,-87.5997,0,-936.701,-87.5997,-936.701	1/1:739:0,724,3:0:0:724,3:25926,94:-2332.32,-217.946,0,-2324.76,-210.384,-2323.86	1/2:375:0,299,75:0:0:299,75:10686,2657:-1087.87,-216.588,-126.58,-871.426,0,-848.849	1/1:393:0,387,0:0:0:387,0:13850,0:-1245.95,-116.499,0,-1245.95,-116.499,-1245.95	1/2:96:0,72,20:0:0:72,20:2561,686:-264.5,-55.7699,-34.0958,-208.807,0,-202.786	1/2:155:0,112,42:0:0:112,42:4024,1447:-445.785,-117.501,-83.7853,-328.331,0,-315.688	1/2:162:0,122,37:0:0:122,37:4359,1291:-460.429,-105.018,-68.2927,-355.454,0,-344.316	1/1:144:0,144,0:0:0:144,0:5172,0:-465.618,-43.3483,0,-465.618,-43.3483,-465.618	1/2:150:0,107,42:0:0:107,42:3836,1453:-431.002,-118.125,-85.9147,-312.935,0,-300.292	1/2:110:0,79,27:0:0:79,27:2832,933:-306.865,-75.8707,-52.0893,-231.06,0,-222.933	1/1:158:0,157,1:0:0:157,1:5616,30:-505.262,-47.2617,0,-502.864,-44.5632,-502.563	1/1:112:0,110,0:0:0:110,0:3944,0:-354.846,-33.1133,0,-354.846,-33.1133,-354.846	1/1:51:0,51,0:0:0:51,0:1828,0:-164.801,-15.3525,0,-164.801,-15.3525,-164.801	1/2:738:0,577,157:0:0:577,157:20611,5477:-2125.91,-445.473,-271.778,-1680.48,0,-1633.22	1/2:512:0,337,169:0:0:337,169:12069,5874:-1461.82,-477.559,-376.112,-984.27,0,-933.396	1/2:367:0,304,58:0:0:304,58:10860,2050:-1052.42,-166.986,-75.4725,-885.465,0,-868.005	1/2:280:0,232,44:0:0:232,44:8305,1539:-802.464,-125.196,-55.3567,-677.295,0,-664.049	1/2:331:0,281,47:0:0:281,47:10089,1635:-955.968,-132.973,-48.3832,-823.032,0,-808.884	1/1:318:0,311,0:0:0:311,0:11154,0:-1003.49,-93.6203,0,-1003.49,-93.6203,-1003.49	1/2:927:0,769,140:0:0:769,140:27527,4897:-2643.23,-398.445,-166.953,-2244.84,0,-2202.69	1/2:695:0,550,136:0:0:550,136:19747,4772:-1999.19,-388.36,-222.793,-1610.86,0,-1569.92	1/2:82:0,58,23:0:0:58,23:2080,815:-236.162,-66.5033,-49.0436,-169.769,0,-162.845	1/1:820:0,807,0:0:0:807,0:28915,0:-2601.2,-242.931,0,-2601.2,-242.931,-2601.2	1/1:324:0,319,0:0:0:319,0:11421,0:-1027.44,-96.0286,0,-1027.44,-96.0286,-1027.44	1/1:353:0,345,1:0:0:345,1:12361,36:-1112.05,-103.855,0,-1109.11,-100.906,-1108.81	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:13:0,12,0:0:0:12,0:427,0:-38.4086,-3.61236,0,-38.4086,-3.61236,-38.4086	1/2:19:0,6,13:0:0:6,13:212,451:-54.2742,-37.0067,-35.2005,-17.6186,0,-13.7052	1/2:12:0,7,5:0:0:7,5:252,171:-34.7935,-14.2211,-12.1139,-20.9217,0,-19.4166	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:448:0,322,121:0:0:322,121:11560,4283:-1291.94,-348.958,-252.026,-943.068,0,-906.643	1/1:711:0,699,0:0:0:699,0:25043,0:-2252.85,-210.42,0,-2252.85,-210.42,-2252.85	1/2:130:0,96,34:0:0:96,34:3429,1181:-375.859,-96.2851,-67.3862,-279.923,0,-269.688	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:364:0,308,51:0:0:308,51:11007,1796:-1043.72,-146.268,-53.5507,-897.508,0,-882.156	1/2:61:0,47,11:0:0:47,11:1688,390:-169.477,-31.774,-17.6256,-137.705,0,-134.394	1/1:627:0,567,51:0:0:567,51:20316,1751:-1827.46,-170.684,0,-1685.29,-28.4993,-1669.93	1/2:388:0,292,95:0:0:292,95:10414,3218:-1109.48,-260.541,-172.64,-849.009,0,-820.411	1/1:149:0,148,1:0:0:148,1:5311,21:-478.014,-44.5524,0,-476.426,-42.8585,-476.125	1/1:258:0,254,0:0:0:254,0:9059,0:-815.017,-76.4616,0,-815.017,-76.4616,-815.017	1/1:494:0,488,0:0:0:488,0:17422,0:-1567.29,-146.903,0,-1567.29,-146.903,-1567.29	1/1:688:0,680,0:0:0:680,0:24392,0:-2194.35,-204.7,0,-2194.35,-204.7,-2194.35	1/2:331:0,277,48:0:0:277,48:9903,1679:-944.083,-136.613,-53.2275,-807.489,0,-793.04	1/2:403:0,302,97:0:0:302,97:10808,3377:-1156.03,-274.671,-183.76,-881.436,0,-852.237	1/1:400:0,398,0:0:0:398,0:14233,0:-1280.43,-119.81,0,-1280.43,-119.81,-1280.43	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:432:0,426,1:0:0:426,1:15288,35:-1375.32,-128.239,0,-1372.47,-125.383,-1372.17	1/2:68:0,53,12:0:0:53,12:1904,430:-190.447,-35.1135,-19.1589,-155.377,0,-151.765	1/2:7:0,5,2:0:0:5,2:180,66:-20.3744,-5.66589,-4.16074,-15.0469,0,-14.4449	1/2:408:0,315,86:0:0:315,86:11293,3022:-1167.09,-246.014,-151.19,-921.127,0,-895.238	1/1:201:0,191,1:0:0:191,1:6819,36:-613.466,-57.4967,0,-610.529,-54.5539,-610.228	1/2:9:0,6,3:0:0:6,3:216,90:-25.1592,-7.49479,-5.68861,-17.9843,0,-17.0812	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/1:203:0,202,0:0:0:202,0:7243,0:-651.7,-60.8081,0,-651.7,-60.8081,-651.7	1/2:208:0,154,51:0:0:154,51:5524,1740:-591.805,-141.223,-94.8645,-450.638,0,-435.285	1/2:13:0,6,7:0:0:6,7:216,246:-38.0033,-20.3749,-18.5687,-17.9843,0,-15.8771	1/1:642:0,638,1:0:0:638,1:22879,25:-2058.22,-192.057,0,-2056.27,-190.123,-2055.97	1/2:600:0,469,123:0:0:469,123:16797,4265:-1716.59,-346.742,-205.559,-1369.93,0,-1332.9	1/2:181:0,134,44:0:0:134,44:4793,1536:-515.841,-125.002,-84.6639,-390.908,0,-377.663	1/1:322:0,318,0:0:0:318,0:11392,0:-1024.81,-95.7275,0,-1024.81,-95.7275,-1024.81	1/2:663:0,513,132:0:0:513,132:18337,4548:-1864.59,-369.441,-215.012,-1495.18,0,-1455.44	1/2:262:0,196,64:0:0:196,64:7044,2225:-755.647,-180.98,-121.978,-574.755,0,-555.489	1/2:43:0,26,16:0:0:26,16:924,551:-120.04,-44.7382,-36.9114,-75.2912,0,-70.4747	1/2:238:0,169,68:0:0:169,68:6038,2383:-686.192,-193.897,-143.023,-492.288,0,-471.818	1/2:206:0,163,39:0:0:163,39:5856,1381:-590.257,-112.528,-63.4602,-477.764,0,-466.024	1/2:39:0,32,5:0:0:32,5:1152,180:-108.755,-14.7406,-5.1076,-94.0678,0,-92.5627	1/2:221:0,182,36:0:0:182,36:6516,1233:-631.481,-100.099,-45.3118,-531.399,0,-520.561	1/2:169:0,125,43:0:0:125,43:4469,1471:-483.8,-119.394,-81.7656,-364.499,0,-351.555	1/2:335:0,281,47:0:0:281,47:10055,1639:-953.318,-133.366,-48.7767,-820.023,0,-805.875	1/1:596:0,593,0:0:0:593,0:21273,0:-1913.8,-178.511,0,-1913.8,-178.511,-1913.8	1/1:417:0,413,0:0:0:413,0:14805,0:-1331.87,-124.325,0,-1331.87,-124.325,-1331.87	1/2:520:0,426,88:0:0:426,88:15191,3114:-1491.96,-253.649,-125.411,-1238.37,0,-1211.88	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/1:392:0,389,0:0:0:389,0:13973,0:-1257.08,-117.101,0,-1257.08,-117.101,-1257.08	1/2:279:0,215,61:0:0:215,61:7669,2147:-799.957,-174.786,-110.065,-625.225,0,-606.863	1/2:561:0,455,102:0:0:455,102:16314,3554:-1619.71,-289.101,-152.133,-1330.69,0,-1299.99	1/2:249:0,182,64:0:0:182,64:6504,2232:-711.873,-181.567,-126.78,-530.348,0,-511.082	1/1:113:0,112,1:0:0:112,1:4020,36:-361.628,-33.7154,0,-358.69,-30.4181,-358.389	1/2:231:0,169,58:0:0:169,58:6072,2046:-662.07,-166.712,-115.837,-495.474,0,-478.014	1/1:319:0,317,0:0:0:317,0:11375,0:-1023.26,-95.4265,0,-1023.26,-95.4265,-1023.26	1/1:98:0,96,0:0:0:96,0:3419,0:-307.663,-28.8989,0,-307.663,-28.8989,-307.663	1/2:176:0,131,41:0:0:131,41:4692,1419:-497.998,-115.339,-75.904,-382.696,0,-370.354	1/1:137:0,137,0:0:0:137,0:4912,0:-442.222,-41.2411,0,-442.222,-41.2411,-442.222	1/1:54:0,54,0:0:0:54,0:1929,0:-173.885,-16.2556,0,-173.885,-16.2556,-173.885	1/2:107:0,65,40:0:0:65,40:2320,1394:-302.587,-113.443,-93.8758,-189.226,0,-177.185	1/2:233:0,154,77:0:0:154,77:5528,2653:-666.439,-215.503,-169.145,-450.954,0,-427.775	1/1:375:0,371,0:0:0:371,0:13282,0:-1194.88,-111.682,0,-1194.88,-111.682,-1194.88	1/1:224:0,223,0:0:0:223,0:7981,0:-718.1,-67.1297,0,-718.1,-67.1297,-718.1
chr09	284825	.	A	G	12039.1	PASS	AB=0.188325;ABP=10554.2;AC=48;AF=0.255319;AN=188;AO=2405;CIGAR=1X;DP=25001;DPB=25001;DPRA=1.27299;EPP=5225.4;EPPR=48993.6;GTI=22;LEN=1;MEANALT=1.18333;MQM=59.8407;MQMR=59.9962;NS=94;NUMALT=1;ODDS=4.04413;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84791;QR=808136;RO=22577;RPL=0;RPP=5225.4;RPPR=48984.9;RPR=2405;RUN=1;SAF=0;SAP=5225.4;SAR=2405;SRF=1;SRP=49019.7;SRR=22576;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:313:280,33:280:10030:33:1153:-9.85156,0,-808.407	0/0:235:235,0:235:8417:0:0:0,-70.742,-757.531	0/0:672:672,0:672:24090:0:0:0,-202.292,-2167.44	0/0:626:623,2:623:22345:2:72:0,-181.667,-2003.62	0/0:231:219,12:219:7843:12:428:0,-30.6791,-667.038	0/1:95:83,12:83:2984:12:428:-10.2158,0,-240.192	0/0:307:307,0:307:10992:0:0:0,-92.4162,-989.175	0/0:459:456,2:456:16305:2:68:0,-131.767,-1460.66	0/0:207:189,18:189:6774:18:640:0,-4.38389,-551.801	0/0:215:215,0:215:7712:0:0:0,-64.7214,-694.111	0/1:154:115,39:115:4111:39:1377:-77.8671,0,-323.816	0/1:261:189,72:189:6745:72:2537:-149.763,0,-528.556	0/1:198:122,76:122:4372:76:2691:-182.602,0,-334.049	0/0:151:151,0:151:5382:0:0:0,-45.4555,-484.51	0/1:201:146,55:146:5248:55:1908:-111.486,0,-411.947	0/1:165:125,39:125:4461:39:1392:-75.8892,0,-351.97	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/0:72:69,2:69:2467:2:72:0,-14.8696,-215.46	0/0:90:90,0:90:3227:0:0:0,-27.0927,-290.651	0/1:476:413,62:413:14769:62:2199:-54.9069,0,-1185.69	0/1:504:382,121:382:13706:121:4229:-228.958,0,-1081.64	0/1:277:228,49:228:8158:49:1734:-72.9545,0,-650.849	0/1:368:322,45:322:11544:45:1599:-33.2311,0,-927.989	0/1:252:202,50:202:7228:50:1792:-85.7029,0,-574.712	0/0:316:315,0:315:11279:0:0:0,-94.8244,-1014.74	0/1:651:556,94:556:19855:94:3301:-101.26,0,-1590.44	0/1:774:636,138:636:22741:138:4871:-205.547,0,-1813.09	0/1:94:75,19:75:2657:19:680:-33.2323,0,-211.079	0/0:900:900,0:900:32271:0:0:0,-270.927,-2903.37	0/0:306:306,0:306:10941:0:0:0,-92.1152,-984.58	0/0:321:320,0:320:11452:0:0:0,-96.3296,-1030.29	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/1:444:331,112:331:11811:112:3902:-217.654,0,-929.132	0/0:375:373,2:373:13341:2:72:0,-106.05,-1193.65	0/1:117:94,23:94:3371:23:807:-37.724,0,-268.384	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8032	0/1:329:288,41:288:10300:41:1440:-30.857,0,-827.882	0/1:68:49,19:49:1755:19:680:-41.0591,0,-137.763	0/1:504:433,71:433:15473:71:2479:-71.5269,0,-1240.56	0/1:157:121,36:121:4334:36:1283:-68.5109,0,-342.972	0/0:138:138,0:138:4925:0:0:0,-41.5421,-443.401	0/0:435:435,0:435:15566:0:0:0,-130.948,-1400.64	0/0:486:484,0:484:17317:0:0:0,-145.699,-1557.85	0/0:542:541,1:541:19353:1:36:0,-159.56,-1737.71	0/1:311:253,58:253:9052:58:2067:-92.68,0,-721.035	0/1:292:236,56:236:8453:56:2008:-93.091,0,-672.869	0/0:564:561,3:561:20087:3:104:0,-160.078,-1797.64	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:574:573,0:573:20556:0:0:0,-172.49,-1849.26	0/1:167:143,24:143:5132:24:851:-26.6374,0,-411.748	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:340:264,75:264:9443:75:2684:-139.495,0,-747.518	0/0:180:180,0:180:6392:0:0:0,-54.1854,-575.37	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:399:399,0:399:14271:0:0:0,-120.111,-1284.14	0/1:210:155,55:155:5527:55:1930:-110.753,0,-434.338	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:469:468,1:468:16773:1:36:0,-137.585,-1505.62	0/1:519:451,68:451:16162:68:2394:-59.4813,0,-1298.02	0/1:143:120,23:120:4307:23:794:-28.7285,0,-344.757	0/0:271:271,0:271:9703:0:0:0,-81.5791,-873.215	0/1:428:359,69:359:12848:69:2431:-90.1821,0,-1027.29	0/1:415:321,94:321:11487:94:3300:-172.289,0,-908.774	0/1:122:90,32:90:3221:32:1122:-64.5606,0,-253.385	0/1:227:182,45:182:6532:45:1572:-73.434,0,-519.627	0/1:116:97,19:97:3480:19:675:-26.1493,0,-278.491	0/1:38:31,7:31:1116:7:252:-11.5883,0,-89.3126	0/1:416:359,57:359:12856:57:1992:-54.321,0,-1031.63	0/1:252:208,44:208:7472:44:1548:-63.7509,0,-596.66	0/1:282:245,37:245:8743:37:1320:-34.209,0,-701.971	0/0:479:478,1:478:17110:1:36:0,-140.595,-1535.94	0/0:372:371,0:371:13288:0:0:0,-111.682,-1195.4	0/1:231:189,42:189:6788:42:1476:-63.5938,0,-541.446	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:356:356,0:356:12741:0:0:0,-107.167,-1146.51	0/1:182:162,20:162:5813:20:715:-9.88368,0,-468.492	0/1:575:453,119:453:16199:119:4194:-204.593,0,-1285.06	0/1:144:105,39:105:3750:39:1373:-80.5183,0,-294.351	0/0:187:187,0:187:6715:0:0:0,-56.2926,-604.422	0/1:122:95,27:95:3416:27:941:-48.2769,0,-270.927	0/0:308:303,5:303:10822:5:176:0,-76.5322,-957.265	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:168:137,31:137:4895:31:1097:-48.465,0,-390.129	0/0:162:162,0:162:5794:0:0:0,-48.7669,-521.573	0/0:103:103,0:103:3675:0:0:0,-31.0061,-330.954	0/1:207:159,48:159:5712:48:1697:-90.6893,0,-451.882	0/1:167:113,54:113:4048:54:1884:-119.546,0,-314.235	0/0:463:462,1:462:16504:1:36:0,-135.779,-1481.42	0/0:272:272,0:272:9743:0:0:0,-81.8802,-876.814
chr09	284828	.	TTCT	ATCA,TTCA	236305	PASS	AB=0.525106,0.134203;ABP=142.139,21203.4;AC=93,16;AF=0.494681,0.0851064;AN=188;AO=13362,2448;CIGAR=1X2M1X,3M1X;DP=25434;DPB=25434;DPRA=91.1505,27.1848;EPP=28879.4,5284.09;EPPR=20554.1;GTI=14;LEN=4,1;MEANALT=2.48387,2.98361;MQM=59.9885,59.8288;MQMR=59.9964;NS=94;NUMALT=2;ODDS=0.374013;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=471471,87653;QR=336257;RO=9528;RPL=17,4;RPP=28870.8,5284.09;RPPR=20554.1;RPR=13345,2444;RUN=1,1;SAF=1,0;SAP=29009.5,5318.77;SAR=13361,2448;SRF=0;SRP=20692.8;SRR=9528;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:324:100,190,34:100:3563:190,34:6682,1224:-513.808,0,-233.222,-444.037,-190.545,-724.224	0/1:239:116,123,0:116:4086:123,0:4317,0:-316.765,0,-295.983,-351.684,-333.009,-684.342	0/1:675:363,311,1:363:12804:311,1:10985,36:-785.305,0,-948.945,-891.642,-1039.63,-1933.91	0/1:634:286,345,2:286:10122:345,2:12184,72:-906.112,0,-720.617,-986.331,-818.597,-1810.21	0/1:232:84,131,12:84:2962:131,12:4668,428:-355.208,0,-201.74,-345.604,-206.284,-583.166	0/1:101:17,70,14:17:607:70,14:2471,504:-196.094,0,-28.4141,-160.131,-8.40599,-205.405	0/1:316:115,201,0:115:4031:201,0:7084,0:-542.502,0,-267.857,-577.12,-328.364,-905.132	0/1:469:191,275,2:191:6747:275,2:9654,72:-728.189,0,-466.675,-779.811,-543.584,-1328.68	0/1:213:93,99,21:93:3274:99,21:3458,745:-253.282,0,-236.731,-220.58,-205.835,-480.794	0/1:224:107,117,0:107:3735:117,0:4107,0:-302.388,0,-268.926,-334.598,-304.147,-638.396	1/2:158:33,84,40:33:1165:84,40:2984,1436:-255.488,-22.2729,-91.8535,-148.284,0,-231.112	1/2:268:60,132,75:60:2135:132,75:4681,2696:-409,-45.7007,-179.964,-207.362,0,-358.786	1/2:198:36,85,76:36:1276:85,76:3004,2727:-352.074,-118.262,-196.623,-140.701,0,-221.773	0/1:152:77,75,0:77:2721:75,0:2646,0:-192.63,0,-199.378,-215.809,-221.955,-437.411	1/2:203:55,90,55:55:1952:90,55:3212,1971:-247.007,-1.70968,-133.66,-102.813,0,-245.3	1/2:169:41,87,41:41:1454:87,41:3053,1472:-237.734,-1.62079,-93.8876,-129.998,0,-236.116	0/1:82:34,46,0:34:1191:46,0:1615,0:-121.195,0,-83.0529,-131.43,-96.9003,-228.339	0/1:73:38,33,1:38:1350:33,1:1165,36:-83.4236,0,-100.067,-91.9251,-107.064,-201.631	0/1:90:51,39,0:51:1810:39,0:1383,0:-97.6757,0,-136.088,-113.028,-147.829,-260.502	0/1:482:141,273,63:141:5004:273,63:9559,2260:-735.302,0,-325.528,-593.424,-223.386,-982.172	1/2:516:84,310,122:84:2972:310,122:10865,4368:-972.652,-114.07,-262.823,-641.797,0,-847.145	1/2:283:43,190,49:43:1515:190,49:6716,1760:-554.251,-20.2264,-86.374,-423.628,0,-532.223	0/1:370:145,182,42:145:5150:182,42:6413,1512:-478.473,0,-364.85,-398.749,-296.265,-805.748	0/1:254:61,142,51:61:2162:142,51:5029,1828:-391.294,0,-133.381,-260.566,-27.0356,-421.342	0/1:319:190,125,0:190:6692:125,0:4373,0:-298.564,0,-507.184,-355.76,-544.813,-900.582	0/1:662:202,361,93:202:7140:361,93:12727,3348:-975.435,0,-472.83,-763.068,-308.326,-1316.58	0/1:782:188,450,139:188:6661:450,139:15861,4992:-1234.8,0,-407.161,-884.163,-135.399,-1384.95	0/1:94:35,40,19:35:1227:40,19:1408,684:-104.081,0,-87.7995,-58.8038,-44.0265,-152.93	0/1:916:447,468,0:447:15810:468,0:16526,0:-1211.23,0,-1146.59,-1345.79,-1287.47,-2633.26	0/1:312:163,148,0:163:5722:148,0:5233,0:-377.132,0,-421.126,-426.2,-465.678,-891.886	0/1:326:181,143,0:181:6369:143,0:5007,0:-352.956,0,-475.485,-407.442,-518.533,-925.915	0/1:2:1,1,0:1:36:1,0:36,0:-2.99621,0,-2.99621,-3.29724,-3.29724,-6.23466	0/1:32:12,20,0:12:421:20,0:707,0:-54.3211,0,-28.5918,-57.9335,-34.6124,-92.1942	0/1:7:1,5,1:1:36:5,1:180,36:-14.3861,0,-1.43227,-11.7497,-1.73718e-08,-14.3861	0/1:14:4,8,2:4:138:8,2:277,72:-21.2957,0,-8.79261,-16.6222,-5.32103,-27.2306	0/1:18:7,10,0:7:252:10,0:359,0:-27.2308,0,-17.604,-29.338,-20.6143,-49.9024	1/2:448:112,221,114:112:3984:221,114:7828,4087:-612.615,-8.66011,-266.812,-312.991,0,-603.355	0/1:386:193,188,2:193:6766:188,2:6562,72:-475.621,0,-493.972,-527.844,-544.691,-1077.82	0/1:120:30,63,25:30:1077:63,25:2231,885:-172.705,0,-68.8922,-109.654,-15.7761,-189.983	0/1:11:2,9,0:2:71:9,0:324,0:-26.1945,0,-3.43073,-26.7966,-6.14,-32.5808	0/1:334:85,205,44:85:3017:205,44:7234,1561:-563.471,0,-184.111,-462.942,-119.706,-695.518	0/1:68:21,27,20:21:743:27,20:946,720:-70.6484,0,-52.3872,-18.2176,-1.76364,-72.7166	0/1:513:146,293,73:146:5134:293,73:10400,2616:-803.425,0,-329.701,-634.085,-204.611,-1030.02	1/2:159:36,86,36:36:1285:86,36:3028,1288:-235.94,-0.270414,-79.1421,-141.747,0,-235.671	0/1:144:71,73,0:71:2502:73,0:2595,0:-190.45,0,-182.086,-211.824,-204.061,-415.531	0/1:440:197,240,2:197:6951:240,2:8494,72:-632.56,0,-493.757,-685.988,-560.13,-1251.4	0/1:494:245,248,0:245:8622:248,0:8825,0:-645.475,0,-627.224,-719.228,-701.879,-1421.11	0/1:552:283,265,2:283:9920:265,2:9294,57:-671.158,0,-727.479,-751.824,-802.726,-1558.45	0/1:315:87,171,57:87:3044:171,57:6026,2033:-464.429,0,-196.172,-324.893,-81.92,-555.385	0/1:293:73,164,56:73:2585:164,56:5816,2012:-451.855,0,-161.2,-309.694,-46.4314,-503.408	0/1:572:265,300,1:265:9392:300,1:10574,32:-781.165,0,-674.828,-858.359,-762.559,-1623.19	1/1:19:1,18,0:1:36:18,0:64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chr09	342137	.	G	A	168121	PASS	AB=0.493873;ABP=5.13919;AC=133;AF=0.707447;AN=188;AO=8194;CIGAR=1X;DP=11516;DPB=11516;DPRA=31.2717;EPP=17752.7;EPPR=7205.79;GTI=0;LEN=1;MEANALT=1.01087;MQM=59.4849;MQMR=59.9157;NS=94;NUMALT=1;ODDS=7.65628;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=291688;QR=118226;RO=3321;RPL=6;RPP=17744;RPPR=7205.79;RPR=8188;RUN=1;SAF=1;SAP=17787.4;SAR=8193;SRF=0;SRP=7214.47;SRR=3321;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:29,13:29:1040:13:468:-29.8164,0,-80.7132	1/1:162:0,162:0:0:162:5755:-517.168,-48.7669,0	1/1:287:0,287:0:0:287:10179:-913.59,-86.3956,0	1/1:361:1,360:1:27:360:12764:-1144.49,-105.972,0	0/1:136:78,58:78:2795:58:2073:-145.86,0,-210.847	0/1:67:29,38:29:1021:38:1359:-102.44,0,-72.0312	1/1:131:0,131:0:0:131:4683:-421.58,-39.4349,0	1/1:215:0,215:0:0:215:7692:-692.119,-64.7215,0	0/1:68:33,35:33:1176:35:1247:-91.885,0,-85.6777	1/1:119:0,119:0:0:119:4268:-384.256,-35.8226,0	0/1:51:24,27:24:856:27:945:-69.8872,0,-62.0086	0/1:67:32,35:32:1139:35:1240:-91.675,0,-82.6494	0/1:61:39,22:39:1388:22:770:-51.2202,0,-106.856	1/1:54:0,54:0:0:54:1914:-172.467,-16.2556,0	0/1:58:33,25:33:1180:25:896:-63.5006,0,-89.0483	0/1:48:17,31:17:608:31:1112:-85.9419,0,-40.6026	1/1:63:0,63:0:0:63:2247:-202.383,-18.9649,0	1/1:55:0,55:0:0:55:1955:-176.186,-16.5567,0	1/1:47:0,47:0:0:47:1684:-151.775,-14.1484,0	0/1:458:238,220:238:8489:220:7833:-567.063,0,-626.128	0/1:160:80,80:80:2814:80:2849:-208.419,0,-205.331	0/1:209:131,78:131:4655:78:2783:-187.787,0,-356.197	0/1:74:25,49:25:900:49:1723:-133.048,0,-59.0272	0/1:165:85,80:85:3000:80:2797:-202.248,0,-220.559	1/1:108:0,108:0:0:108:3872:-348.64,-32.5112,0	0/1:384:185,199:185:6627:199:7135:-526.483,0,-480.717	0/1:278:138,140:138:4903:140:5011:-367.113,0,-357.705	0/1:44:23,21:23:816:21:752:-54.7385,0,-60.5164	0/1:415:175,240:175:6258:240:8512:-641.098,0,-438.385	1/1:115:0,115:0:0:115:4098:-368.854,-34.6185,0	1/1:110:1,109:1:36:109:3870:-344.882,-29.515,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:23:0,23:0:0:23:815:-73.6483,-6.92369,0	1/1:11:0,11:0:0:11:383:-34.8029,-3.31133,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:21:0,21:0:0:21:738:-66.7409,-6.32163,0	0/1:204:103,100:103:3661:100:3554:-258.41,0,-268.209	1/1:206:2,204:2:63:204:7293:-650.332,-56.029,0	0/1:48:25,23:25:891:23:828:-60.3947,0,-66.0593	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:193:103,90:103:3691:90:3232:-232.935,0,-274.29	0/1:26:13,13:13:459:13:468:-34.6247,0,-33.8173	0/1:238:132,106:132:4728:106:3787:-269.292,0,-354.034	0/1:87:46,41:46:1652:41:1440:-103.676,0,-122.779	1/1:68:0,68:0:0:68:2380:-214.448,-20.47,0	1/1:121:0,121:0:0:121:4273:-384.746,-36.4246,0	1/1:160:0,160:0:0:160:5670:-510.251,-48.1648,0	1/1:248:1,247:1:36:247:8817:-789.477,-71.0572,0	0/1:144:54,90:54:1928:90:3220:-246.542,0,-130.448	0/1:233:137,96:137:4862:96:3409:-236.879,0,-367.594	1/1:217:0,217:0:0:217:7745:-696.852,-65.3235,0	1/1:10:0,10:0:0:10:360:-32.7281,-3.0103,0	1/1:203:0,203:0:0:203:7225:-650.068,-61.1091,0	0/1:34:21,13:21:731:13:468:-32.2082,0,-55.8754	0/1:28:11,17:11:392:17:612:-46.9846,0,-27.1912	0/1:182:71,111:71:2539:111:3933:-299.257,0,-173.968	1/1:57:2,55:2:72:55:1951:-168.989,-10.322,0	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:54:0,54:0:0:54:1921:-173.109,-16.2556,0	0/1:107:57,50:57:2035:50:1775:-127.791,0,-151.211	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5825	1/1:302:1,301:1:36:301:10689:-958.231,-87.3128,0	0/1:222:118,104:118:4156:104:3718:-267.902,0,-307.393	0/1:70:34,36:34:1207:36:1273:-93.7959,0,-87.8632	1/1:165:0,165:0:0:165:5894:-530.502,-49.67,0	0/1:213:111,102:111:3950:102:3663:-265.733,0,-291.568	0/1:87:52,35:52:1827:35:1260:-87.5017,0,-138.518	0/1:12:4,8:4:140:8:288:-22.655,0,-9.33222	0/1:92:49,43:49:1736:43:1527:-109.967,0,-128.827	0/1:79:38,41:38:1329:41:1472:-108.96,0,-96.1261	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:100:37,63:37:1324:63:2252:-172.748,0,-89.3363	0/1:98:45,53:45:1607:53:1892:-140.582,0,-115.383	0/1:94:49,45:49:1760:45:1610:-116.871,0,-130.387	1/1:291:0,291:0:0:291:10325:-927.415,-87.5997,0	1/1:149:0,149:0:0:149:5298:-476.884,-44.8535,0	0/1:173:75,98:75:2670:98:3498:-262.624,0,-188.465	1/1:18:0,18:0:0:18:644:-58.2759,-5.41854,0	1/1:174:1,173:1:36:173:6207:-554.996,-48.7809,0	0/1:226:121,105:121:4318:105:3736:-268.357,0,-320.305	0/1:319:166,153:166:5917:153:5453:-394.821,0,-436.603	0/1:93:50,43:50:1762:43:1518:-108.904,0,-130.864	1/1:53:0,53:0:0:53:1874:-168.928,-15.9546,0	0/1:83:37,46:37:1316:46:1644:-123.022,0,-93.7563	1/1:157:0,157:0:0:157:5523:-497.144,-47.2617,0	1/1:51:0,51:0:0:51:1820:-164.01,-15.3525,0	0/1:76:44,32:44:1572:32:1148:-80.6214,0,-118.465	1/1:65:0,65:0:0:65:2298:-207.076,-19.567,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	0/1:52:30,22:30:1043:22:773:-54.2253,0,-78.5225	0/1:69:39,30:39:1400:30:1065:-75.3749,0,-105.528	1/1:171:1,170:1:36:170:6083:-543.742,-47.8779,0	1/1:116:0,116:0:0:116:4112:-370.197,-34.9195,0
chr09	404327	.	T	A	213084	PASS	AB=0.505046;ABP=3.95258;AC=140;AF=0.744681;AN=188;AO=8219;CIGAR=1X;DP=10350;DPB=10350;DPRA=111.28;EPP=5547.43;EPPR=4155.94;GTI=4;LEN=1;MEANALT=1.05376;MQM=52.5131;MQMR=34.9925;NS=94;NUMALT=1;ODDS=3.80973;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=294430;QR=75731;RO=2123;RPL=1819;RPP=5547.43;RPPR=4155.94;RPR=6400;RUN=1;SAF=0;SAP=17850.3;SAR=8219;SRF=0;SRP=4613.05;SRR=2123;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:28,31:28:1004:31:1108:-82.1715,0,-65.1796	0/1:121:54,66:54:1915:66:2355:-175.326,0,-117.554	0/1:182:95,86:95:3385:86:3092:-223.259,0,-221.031	1/1:201:0,201:0:0:201:7226:-648.82,-60.507,0	1/1:148:0,148:0:0:148:5298:-475.842,-44.5524,0	1/1:72:0,72:0:0:72:2592:-232.903,-21.6742,0	1/1:189:0,189:0:0:189:6754:-606.545,-56.8947,0	0/1:156:82,74:82:2917:74:2632:-189.141,0,-190.365	0/1:103:61,42:61:2180:42:1499:-103.845,0,-147.818	0/1:86:33,53:33:1184:53:1904:-145.084,0,-69.8955	0/1:35:21,14:21:741:14:504:-35.115,0,-49.5953	1/1:71:0,71:0:0:71:2539:-228.412,-21.3731,0	0/1:61:21,40:21:756:40:1440:-111.197,0,-43.3142	0/1:46:26,20:26:936:20:711:-50.4108,0,-63.0463	0/1:53:21,32:21:756:32:1140:-86.8579,0,-43.9999	1/1:49:0,49:0:0:49:1760:-157.26,-14.7505,0	0/1:77:51,26:51:1813:26:936:-59.8804,0,-124.699	1/1:47:1,46:1:36:46:1652:-145.251,-10.9023,0	0/1:21:10,11:10:360:11:396:-29.6241,0,-24.0713	0/1:297:135,162:135:4788:162:5809:-432.241,0,-294.864	0/1:157:63,91:63:2256:91:3268:-247.323,0,-134.593	1/1:318:0,318:0:0:318:11385:-1007.96,-95.7275,0	0/1:103:51,52:51:1828:52:1872:-136.311,0,-115.923	1/1:123:3,120:3:108:120:4276:-374.92,-27.9374,0	0/1:92:46,46:46:1633:46:1656:-120.825,0,-106.178	1/1:364:0,364:0:0:364:13039:-1154.57,-109.575,0	0/1:205:104,101:104:3686:101:3620:-263.67,0,-236.112	0/1:39:18,21:18:648:21:756:-56.5633,0,-41.1722	0/1:287:146,141:146:5190:141:5068:-361.866,0,-326.672	0/1:123:61,62:61:2146:62:2226:-163.119,0,-134.807	0/1:163:83,80:83:2934:80:2861:-208.252,0,-186.938	1/1:21:0,21:0:0:21:756:-68.2978,-6.32163,0	1/1:24:0,24:0:0:24:860:-77.4898,-7.22472,0	1/1:4:0,4:0:0:4:144:-13.2999,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	1/1:10:0,10:0:0:10:360:-32.555,-3.0103,0	0/1:168:83,85:83:2972:85:3056:-217.626,0,-187.399	1/1:233:1,232:1:36:232:8301:-742.841,-66.8938,0	0/1:40:19,21:19:680:21:756:-56.2589,0,-43.5913	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.24616	0/1:186:107,79:107:3816:79:2819:-196.064,0,-255.972	1/1:42:0,42:0:0:42:1503:-135.407,-12.6433,0	0/1:130:64,66:64:2288:66:2364:-171.451,0,-146.085	0/1:47:25,22:25:900:22:774:-55.7104,0,-58.7578	1/1:37:0,37:0:0:37:1328:-119.489,-11.1381,0	1/1:143:1,142:1:36:142:5108:-448.854,-39.8597,0	0/1:129:56,73:56:1993:73:2601:-195.046,0,-123.95	1/1:183:0,183:0:0:183:6535:-586.721,-55.0885,0	1/1:132:0,132:0:0:132:4740:-425.626,-39.736,0	0/1:97:41,56:41:1460:56:2012:-151.926,0,-88.869	1/1:247:0,247:0:0:247:8855:-782.794,-74.3544,0	0/1:6:1,5:1:36:5:176:-14.3638,0,-1.38144	1/1:227:0,227:0:0:227:8138:-731.008,-68.3338,0	0/1:60:34,26:34:1205:26:936:-64.6357,0,-76.7855	0/1:27:20,7:20:716:7:252:-14.8774,0,-50.5485	0/1:113:43,70:43:1544:70:2512:-190.591,0,-91.5776	1/1:75:1,74:1:36:74:2664:-236.194,-19.3896,0	1/1:3:0,3:0:0:3:108:-9.93584,-0.90309,0	1/1:27:0,27:0:0:27:972:-86.721,-8.12781,0	0/1:89:44,45:44:1580:45:1597:-116.92,0,-102.719	1/1:101:0,101:0:0:101:3611:-322.977,-30.404,0	0/1:4:2,2:2:72:2:72:-5.46314,0,-4.85237	1/1:268:0,268:0:0:268:9589:-848.474,-80.676,0	1/1:202:0,202:0:0:202:7218:-648.357,-60.8081,0	0/1:61:24,37:24:860:37:1309:-99.3604,0,-52.1822	0/1:92:43,49:43:1548:49:1762:-130.635,0,-95.6606	1/1:204:1,203:1:36:203:7271:-648.765,-58.2225,0	1/1:119:4,115:4:144:115:4120:-358.25,-23.9742,0	1/1:14:0,14:0:0:14:504:-45.651,-4.21442,0	1/1:115:0,115:0:0:115:4119:-370.149,-34.6185,0	1/1:82:0,82:0:0:82:2948:-261.41,-24.6845,0	0/1:18:9,9:9:320:9:324:-24.0569,0,-20.5911	1/1:164:0,163:0:0:163:5860:-524.351,-49.0679,0	0/1:59:23,36:23:824:36:1292:-98.5506,0,-49.3456	1/1:152:0,152:0:0:152:5416:-485.982,-45.7566,0	1/1:212:0,212:0:0:212:7592:-682.209,-63.8184,0	1/1:202:0,202:0:0:202:7228:-648.246,-60.8081,0	1/1:104:0,104:0:0:104:3731:-335.304,-31.3071,0	0/1:6:1,5:1:36:5:180:-14.7288,0,-1.43998	1/1:153:0,153:0:0:153:5475:-491.414,-46.0576,0	1/1:149:0,149:0:0:149:5326:-478.406,-44.8535,0	1/1:424:0,424:0:0:424:15216:-1365,-127.637,0	0/1:90:49,41:49:1764:41:1472:-105.245,0,-113.038	1/1:36:0,36:0:0:36:1296:-116.834,-10.8371,0	0/1:56:32,24:32:1152:24:860:-60.6311,0,-75.5818	0/1:120:58,62:58:2084:62:2232:-164.771,0,-130.975	0/1:39:26,13:26:924:13:464:-30.3234,0,-64.3708	1/1:76:0,76:0:0:76:2710:-243.474,-22.8783,0	1/1:78:0,78:0:0:78:2774:-249.632,-23.4803,0	0/1:18:10,8:10:360:8:288:-20.5039,0,-24.1215	0/1:74:35,39:35:1252:39:1400:-103.894,0,-79.8672	0/1:66:45,21:45:1605:21:756:-48.2741,0,-108.296	1/1:138:5,133:5:180:133:4755:-412.256,-26.8791,0	1/1:104:1,101:1:36:101:3623:-322.345,-27.8498,0
chr09	404335	.	GTGTAA	CTGTAA,CTA	216153	PASS	AB=0.501297,0.495874;ABP=3.07225,3.63752;AC=140,48;AF=0.744681,0.255319;AN=188;AO=8168,2123;CIGAR=1X5M,1X1M3D1M;DP=10327;DPB=9264.17;DPRA=111.032,0.751552;EPP=17739.6,4613.05;EPPR=5.18177;GTI=4;LEN=1,3;MEANALT=1.96774,2.26786;MQM=52.6229,34.4616;MQMR=60;NS=94;NUMALT=2;ODDS=3.59305;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=292654,75641;QR=35;RO=1;RPL=8168,2123;RPP=17739.6,4613.05;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=17739.6,4613.05;SAR=8168,2123;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:59:0,31,28:0:0:31,28:1112,998:-164.272,-73.6538,-64.3219,-90.9586,0,-82.5298	1/2:124:0,65,59:0:0:65,59:2340,2092:-339.737,-149.306,-129.739,-190.766,0,-173.006	1/2:182:0,87,95:0:0:87,95:3128,3385:-501.366,-246.557,-220.367,-255.15,0,-226.553	1/1:203:0,203,0:0:0:203,0:7278,0:-653.739,-61.1091,0,-653.739,-61.1091,-653.739	1/1:146:0,146,0:0:0:146,0:5211,0:-468.113,-43.9504,0,-468.113,-43.9504,-468.113	1/1:73:0,73,0:0:0:73,0:2628,0:-236.138,-21.9752,0,-236.138,-21.9752,-236.138	1/1:189:0,189,0:0:0:189,0:6776,0:-608.149,-56.8947,0,-608.149,-56.8947,-608.149	1/2:155:0,72,83:0:0:72,83:2577,2962:-425.167,-215.854,-194.18,-209.654,0,-184.668	1/2:100:0,42,58:0:0:42,58:1512,2055:-273.39,-150.444,-137.8,-123.289,0,-105.829	1/2:85:0,51,34:0:0:51,34:1832,1204:-235.847,-87.0353,-71.6828,-149.145,0,-138.91	1/2:37:0,16,21:0:0:16,21:576,754:-101.393,-54.4279,-49.6114,-47.3072,0,-40.9856	1/1:71:0,71,0:0:0:71,0:2548,0:-229.219,-21.3731,0,-229.219,-21.3731,-229.219	1/2:62:0,39,22:0:0:39,22:1400,781:-170.855,-56.9114,-45.1713,-113.926,0,-107.303	1/2:45:0,20,25:0:0:20,25:720,894:-123.72,-65.0149,-58.9943,-59.0478,0,-51.522	1/2:54:0,32,22:0:0:32,22:1148,790:-149.674,-56.1104,-46.4774,-93.8961,0,-87.2734	1/1:49:0,49,0:0:0:49,0:1750,0:-157.026,-14.7505,0,-157.026,-14.7505,-157.026	1/2:73:0,24,49:0:0:24,49:856,1754:-196.325,-126.763,-119.538,-69.9054,0,-55.1549	1/1:47:0,46,1:0:0:46,1:1648,36:-147.816,-13.8474,0,-145.196,-10.9023,-144.895	1/2:20:0,11,9:0:0:11,9:396,313:-55.4406,-23.1414,-19.8301,-32.6344,0,-29.9251	1/2:293:0,163,130:0:0:163,130:5856,4645:-807.727,-331.401,-282.333,-476.661,0,-437.527	1/2:158:0,93,65:0:0:93,65:3336,2322:-438.734,-166.909,-138.913,-272.159,0,-252.592	1/1:321:0,321,0:0:0:321,0:11494,0:-1018.39,-96.6306,0,-1018.39,-96.6306,-1018.39	1/2:105:0,49,53:0:0:49,53:1752,1875:-277.105,-134.455,-119.705,-142.689,0,-126.735	1/1:121:0,117,3:0:0:117,3:4177,103:-374.897,-35.2205,0,-367.299,-27.613,-366.396	1/2:89:0,45,43:0:0:45,43:1597,1548:-242.057,-112.682,-99.1357,-129.388,0,-116.444	1/1:362:0,361,0:0:0:361,0:12926,0:-1146.12,-108.672,0,-1146.12,-108.672,-1146.12	1/2:208:0,100,107:0:0:100,107:3573,3814:-566.397,-275.526,-245.423,-290.868,0,-258.657	1/2:39:0,21,18:0:0:21,18:756,648:-109.135,-47.4939,-41.1722,-61.9819,0,-56.5633	1/2:287:0,139,148:0:0:139,148:4976,5260:-773.95,-374.246,-332.403,-400.039,0,-355.486	1/2:118:0,60,58:0:0:60,58:2156,2055:-321.351,-145.983,-127.921,-175.703,0,-158.244	1/2:159:0,78,80:0:0:78,80:2777,2858:-429.375,-203.261,-179.781,-226.115,0,-202.032	1/1:21:0,21,0:0:0:21,0:756,0:-68.2978,-6.32163,0,-68.2978,-6.32163,-68.2978	1/1:24:0,23,0:0:0:23,0:828,0:-74.4249,-6.92369,0,-74.4249,-6.92369,-74.4249	1/1:4:0,4,0:0:0:4,0:144,0:-13.2999,-1.20412,0,-13.2999,-1.20412,-13.2999	1/1:1:0,1,0:0:0:1,0:36,0:-3.59457,-0.30103,0,-3.59457,-0.30103,-3.59457	1/1:9:0,8,0:0:0:8,0:284,0:-25.5346,-2.40824,0,-25.5346,-2.40824,-25.5346	1/2:161:0,82,79:0:0:82,79:2934,2811:-435.341,-199.968,-175.284,-235.705,0,-211.924	1/1:236:0,235,1:0:0:235,1:8430,36:-757.079,-70.7421,0,-754.458,-67.7969,-754.157	1/2:40:0,21,19:0:0:21,19:756,673:-111.041,-49.4015,-43.0799,-61.9785,0,-56.2589	2/2:1:0,0,1:0:0:0,1:0,36:-3.24616,-3.24616,-3.24616,-0.30103,-0.30103,0	1/2:184:0,77,106:0:0:77,106:2743,3797:-499.187,-276.064,-252.885,-223.14,0,-191.231	1/1:43:0,43,0:0:0:43,0:1548,0:-139.45,-12.9443,0,-139.45,-12.9443,-139.45	1/2:135:0,66,69:0:0:66,69:2368,2457:-370.119,-177.313,-157.445,-193.145,0,-172.373	1/2:45:0,22,23:0:0:22,23:786,816:-122.709,-58.9391,-52.3164,-64.106,0,-57.1823	1/1:36:0,36,0:0:0:36,0:1292,0:-116.254,-10.8371,0,-116.254,-10.8371,-116.254	1/1:142:0,140,1:0:0:140,1:5021,36:-445.156,-42.1442,0,-442.588,-39.5669,-442.287	1/2:134:0,74,59:0:0:74,59:2660,2101:-369.865,-153.148,-130.872,-216.713,0,-198.952	1/1:186:0,185,0:0:0:185,0:6604,0:-592.742,-55.6906,0,-592.742,-55.6906,-592.742	1/1:133:1,132,0:1:35:132,0:4724,0:-420.698,-36.5384,0,-420.999,-39.736,-423.847	1/2:98:0,56,42:0:0:56,42:2016,1499:-272.397,-108.065,-91.2075,-164.668,0,-152.025	1/1:243:0,243,0:0:0:243,0:8653,0:-767.228,-73.1503,0,-767.228,-73.1503,-767.228	1/2:6:0,5,1:0:0:5,1:176,36:-17.2272,-2.88659,-1.38144,-14.6649,0,-14.3638	1/1:226:0,226,0:0:0:226,0:8105,0:-728.063,-68.0328,0,-728.063,-68.0328,-728.063	1/2:57:0,26,31:0:0:26,31:920,1085:-149.707,-76.0474,-68.2206,-73.9883,0,-64.6563	1/2:27:0,7,20:0:0:7,20:252,712:-72.864,-52.3158,-50.2086,-20.898,0,-14.8774	1/2:112:0,67,45:0:0:67,45:2408,1588:-310.809,-11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chr09	431701	.	T	C	194715	PASS	AB=0.453385;ABP=153.833;AC=135;AF=0.718085;AN=188;AO=9529;CIGAR=1X;DP=13913;DPB=13913;DPRA=0;EPP=20695;EPPR=9392.85;GTI=1;LEN=1;MEANALT=1.04255;MQM=58.9945;MQMR=35.6495;NS=94;NUMALT=1;ODDS=0.787184;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=340436;QR=156965;RO=4380;RPL=0;RPP=20695;RPPR=9392.85;RPR=9529;RUN=1;SAF=9529;SAP=20695;SAR=0;SRF=4380;SRP=9514.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:12,45:12:432:45:1620:-128.928,0,-14.063	1/1:258:0,257:0:0:257:9186:-825.875,-77.3647,0	1/1:413:0,413:0:0:413:14781:-1328.88,-124.325,0	1/1:395:1,394:1:36:394:14089:-1264.1,-116.44,0	0/1:130:74,56:74:2656:56:2008:-141.833,0,-171.436	0/1:49:31,18:31:1112:18:640:-43.1066,0,-71.7867	1/1:151:0,151:0:0:151:5408:-486.644,-45.4555,0	1/1:259:1,258:1:36:258:9209:-823.913,-74.8431,0	0/1:90:47,43:47:1684:43:1540:-111.607,0,-102.838	1/1:82:1,81:1:36:81:2896:-255.922,-21.0862,0	0/1:80:34,46:34:1206:46:1643:-122.522,0,-75.0949	0/1:102:58,44:58:2062:44:1576:-111.244,0,-129.019	0/1:79:42,37:42:1512:37:1323:-95.4739,0,-91.6681	1/1:101:0,101:0:0:101:3620:-325.886,-30.404,0	0/1:96:44,52:44:1584:52:1864:-139.083,0,-102.736	0/1:97:44,53:44:1575:53:1877:-139.739,0,-95.8449	1/1:127:2,125:2:72:125:4480:-396.39,-31.3941,0	1/1:85:0,84:0:0:84:2999:-269.333,-25.2865,0	1/1:63:0,63:0:0:63:2251:-202.557,-18.9649,0	0/1:487:294,193:294:10556:193:6916:-475.606,0,-724.264	0/1:176:89,87:89:3191:87:3110:-226.682,0,-203.604	0/1:207:156,51:156:5581:51:1828:-102.479,0,-413.674	0/1:136:64,72:64:2289:72:2580:-191.4,0,-147.73	0/1:146:74,72:74:2646:72:2584:-188.654,0,-167.65	1/1:56:0,56:0:0:56:2007:-180.698,-16.8577,0	0/1:374:211,163:211:7559:163:5809:-409.699,0,-524.009	0/1:305:164,141:164:5892:141:5047:-362.243,0,-380.031	0/1:44:32,12:32:1152:12:428:-25.5909,0,-77.9609	0/1:583:363,220:363:12999:220:7839:-528.184,0,-923.273	1/1:196:0,196:0:0:196:7002:-629.446,-59.0019,0	1/1:174:1,173:1:36:173:6204:-554.651,-49.0331,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:28:0,28:0:0:28:1004:-90.6534,-8.42884,0	1/1:12:0,12:0:0:12:432:-39.2208,-3.61236,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-17.282	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:259:121,138:121:4341:138:4932:-363.971,0,-288.895	1/1:246:1,245:1:36:245:8744:-783.89,-71.7745,0	0/1:84:48,36:48:1724:36:1288:-90.8967,0,-109.25	0/1:15:5,10:5:180:10:360:-28.2289,0,-9.86713	0/1:299:147,152:147:5279:152:5443:-399.586,0,-330.229	0/1:68:40,28:40:1431:28:1008:-70.5053,0,-92.4804	0/1:268:131,137:131:4712:137:4872:-357.202,0,-300.858	0/1:117:57,60:57:2037:60:2148:-158.005,0,-134.402	1/1:88:0,88:0:0:88:3147:-283.158,-26.4906,0	1/1:53:1,52:1:36:52:1868:-164.801,-12.3563,0	1/1:245:0,244:0:0:244:8677:-780.088,-73.4513,0	1/1:133:0,133:0:0:133:4732:-425.816,-40.037,0	0/1:139:74,65:74:2633:65:2328:-167.5,0,-175.227	0/1:284:126,158:126:4528:158:5620:-419.435,0,-289.753	1/1:188:0,188:0:0:188:6734:-605.721,-56.5936,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:244:0,244:0:0:244:8712:-783.745,-73.4513,0	0/1:64:20,44:20:720:44:1580:-123.226,0,-41.9999	0/1:24:19,5:19:684:5:176:-8.96014,0,-46.2432	0/1:339:219,120:219:7837:120:4261:-281.148,0,-523.398	1/1:70:0,70:0:0:70:2495:-224.688,-21.0721,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-22.2123	1/1:12:0,12:0:0:12:432:-39.1965,-3.61236,0	1/1:85:0,85:0:0:85:3033:-272.888,-25.5876,0	0/1:141:68,73:68:2422:73:2620:-193.34,0,-156.823	0/1:18:11,7:11:387:7:248:-17.2457,0,-27.418	1/1:298:0,297:0:0:297:10575:-949.988,-89.4059,0	0/1:262:160,102:160:5742:102:3645:-248.651,0,-395.521	0/1:84:45,39:45:1620:39:1396:-100.565,0,-104.947	1/1:208:2,206:2:72:206:7338:-653.545,-56.2566,0	0/1:243:154,89:154:5517:89:3176:-212.618,0,-385.751	0/1:175:148,27:148:5316:27:968:-34.7434,0,-384.663	0/1:46:22,24:22:792:24:851:-63.0396,0,-49.1234	0/1:95:43,52:43:1535:52:1868:-139.693,0,-85.29	0/1:104:52,52:52:1851:52:1863:-136.616,0,-126.996	0/1:23:13,10:13:468:10:352:-25.0921,0,-32.5608	0/1:104:60,44:60:2152:44:1563:-109.602,0,-133.34	0/1:77:39,38:39:1400:38:1355:-98.7475,0,-86.3547	0/1:179:65,114:65:2336:114:4064:-311.456,0,-133.76	1/1:269:0,269:0:0:269:9624:-865.504,-80.9771,0	1/1:235:0,235:0:0:235:8357:-750.747,-70.7421,0	0/1:125:58,67:58:2066:67:2408:-179.129,0,-118.929	1/1:10:0,10:0:0:10:360:-32.7157,-3.0103,0	1/1:238:0,238:0:0:238:8503:-763.687,-71.6451,0	0/1:262:139,123:139:4987:123:4387:-315.756,0,-307.652	0/1:300:164,136:164:5871:136:4868:-347.74,0,-395.372	0/1:109:50,59:50:1800:59:2107:-156.964,0,-116.726	1/1:112:0,112:0:0:112:4003:-359.86,-33.7154,0	0/1:132:50,82:50:1775:82:2924:-223.496,0,-106.876	1/1:167:2,165:2:72:165:5903:-524.645,-43.9143,0	1/1:60:0,60:0:0:60:2152:-193.79,-18.0618,0	0/1:99:50,49:50:1774:49:1751:-128.003,0,-105.439	1/1:97:0,97:0:0:97:3458:-311.225,-29.1999,0	1/1:79:0,79:0:0:79:2832:-254.976,-23.7814,0	0/1:95:50,45:50:1796:45:1598:-115.471,0,-116.089	0/1:102:72,30:72:2592:30:1065:-65.4091,0,-184.916	1/1:193:0,193:0:0:193:6894:-619.922,-58.0988,0	1/1:153:0,153:0:0:153:5462:-491.12,-46.0576,0
chr09	578073	.	A	C	21956.8	PASS	AB=0.527899;ABP=20.0942;AC=55;AF=0.295699;AN=186;AO=1340;CIGAR=1X;DP=4209;DPB=4209;DPRA=1.09975;EPP=2886.78;EPPR=6202.58;GTI=1;LEN=1;MEANALT=1.05455;MQM=59.9754;MQMR=59.9668;NS=93;NUMALT=1;ODDS=0.156946;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47001;QR=100382;RO=2863;RPL=3;RPP=2886.78;RPPR=6202.58;RPR=1337;RUN=1;SAF=0;SAP=2912.78;SAR=1340;SRF=0;SRP=6219.94;SRR=2863;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:30,15:30:1056:15:528:-34.305,0,-81.8045	0/0:38:38,0:38:1334:0:0:0,-11.4391,-120.358	0/0:46:46,0:46:1629:0:0:0,-13.8474,-146.897	0/0:80:80,0:80:2828:0:0:0,-24.0824,-254.759	0/1:23:9,14:9:320:14:475:-36.1498,0,-22.2187	0/1:22:9,13:9:315:13:447:-33.935,0,-22.0646	0/0:54:54,0:54:1907:0:0:0,-16.2556,-171.904	0/0:56:56,0:56:1982:0:0:0,-16.8577,-178.653	0/1:58:24,34:24:839:34:1203:-91.1153,0,-58.3675	0/0:44:44,0:44:1530:0:0:0,-13.2453,-137.988	0/1:26:17,9:17:599:9:324:-21.6791,0,-46.4113	0/1:62:26,36:26:910:36:1246:-93.7764,0,-63.5502	0/1:47:24,23:24:843:23:807:-58.8008,0,-62.0396	0/0:28:28,0:28:939:0:0:0,-8.42884,-84.8116	0/1:38:20,18:20:699:18:611:-43.8654,0,-51.7933	0/1:27:12,14:12:413:14:492:-36.5755,0,-29.46	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/0:16:16,0:16:559:0:0:0,-4.81648,-50.6376	0/0:26:26,0:26:893:0:0:0,-7.82678,-80.6808	0/1:60:22,38:22:773:38:1364:-104.999,0,-51.8277	0/1:45:23,22:23:808:22:759:-55.0813,0,-59.4938	0/1:60:24,36:24:847:36:1265:-96.0888,0,-58.4869	0/1:62:31,31:31:1104:31:1062:-77.2188,0,-81.0068	0/1:33:14,19:14:500:19:680:-51.5952,0,-35.4022	0/0:69:69,0:69:2442:0:0:0,-20.7711,-220.016	0/1:97:48,49:48:1707:49:1692:-123.36,0,-124.715	0/1:103:35,68:35:1234:68:2384:-183.81,0,-80.3566	0/1:19:12,7:12:428:7:248:-16.9446,0,-33.1392	0/1:88:49,38:49:1700:38:1348:-95.1896,0,-126.853	0/0:55:54,0:54:1861:0:0:0,-16.2556,-167.406	0/0:38:37,0:37:1292:0:0:0,-11.1381,-116.219	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:125:0:0:0,-1.20412,-11.5586	0/1:10:4,6:4:135:6:216:-16.7802,0,-9.47221	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:138:76,62:76:2685:62:2196:-156.364,0,-200.353	0/0:44:44,0:44:1580:0:0:0,-13.2453,-141.3	0/1:40:19,21:19:666:21:744:-55.2431,0,-48.2224	.:.:.:.:.:.:.:.	0/1:138:76,62:76:2628:62:2208:-157.443,0,-195.225	0/1:22:14,8:14:500:8:280:-18.9166,0,-38.7135	0/1:56:27,29:27:948:29:1027:-75.8845,0,-68.777	0/1:42:22,20:22:758:20:691:-49.8671,0,-55.8909	0/0:41:41,0:41:1416:0:0:0,-12.3422,-127.733	0/0:52:52,0:52:1821:0:0:0,-15.6536,-164.169	0/0:55:55,0:55:1933:0:0:0,-16.5566,-174.245	0/0:74:74,0:74:2610:0:0:0,-22.2762,-235.149	0/1:51:21,30:21:732:30:1053:-79.7254,0,-50.8489	0/1:40:18,22:18:639:22:776:-58.1204,0,-45.797	0/0:24:23,1:23:803:1:36:0,-3.62644,-68.9901	0/0:8:8,0:8:264:0:0:0,-2.40824,-24.0803	0/0:106:106,0:106:3738:0:0:0,-31.9092,-336.622	0/1:19:7,12:7:248:12:428:-33.1392,0,-16.9446	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:65:35,30:35:1197:30:1042:-74.5185,0,-88.4603	0/0:32:32,0:32:1132:0:0:0,-9.63296,-102.189	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:6:6,0:6:198:0:0:0,-1.80618,-18.1433	0/1:25:13,12:13:464:12:420:-30.6083,0,-34.5718	0/1:75:34,41:34:1190:41:1421:-105.605,0,-84.8263	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:72:72,0:72:2525:0:0:0,-21.6742,-227.499	0/1:62:19,41:19:680:41:1456:-112.915,0,-43.1077	0/1:28:14,14:14:500:14:492:-36.1835,0,-36.9073	0/0:30:29,1:29:1023:1:36:0,-5.43262,-88.7835	0/1:58:18,40:18:614:40:1414:-110.096,0,-38.1197	0/1:58:16,42:16:563:42:1499:-117.744,0,-33.5394	0/1:26:12,14:12:424:14:481:-35.7883,0,-30.6696	0/1:31:12,19:12:415:19:680:-52.1972,0,-28.3484	0/1:25:15,10:15:519:10:334:-22.8569,0,-39.511	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:62:31,31:31:1097:31:1078:-78.663,0,-80.3742	0/1:66:30,36:30:1042:36:1262:-94.013,0,-74.22	0/1:65:26,39:26:911:39:1375:-104.48,0,-62.738	0/0:77:77,0:77:2731:0:0:0,-23.1793,-246.031	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.461	0/1:38:23,15:23:812:15:528:-36.4103,0,-61.9618	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:57:57,0:57:2001:0:0:0,-17.1587,-180.362	0/1:32:11,21:11:396:21:748:-58.0123,0,-26.3498	0/1:79:43,36:43:1540:36:1260:-89.9182,0,-115.112	0/1:46:21,25:21:714:25:880:-65.6703,0,-50.7282	0/0:42:42,0:42:1461:0:0:0,-12.6433,-131.782	0/1:36:17,19:17:588:19:643:-47.3478,0,-42.4051	0/0:83:83,0:83:2837:0:0:0,-24.9855,-255.568	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/1:53:28,25:28:968:25:862:-61.9386,0,-71.4741	0/0:59:59,0:59:2048:0:0:0,-17.7608,-183.65	0/0:22:22,0:22:748:0:0:0,-6.62266,-67.6332	0/1:66:37,29:37:1299:29:968:-67.5532,0,-97.3425	0/1:44:13,31:13:468:31:1104:-86.4253,0,-29.2143	0/0:46:46,0:46:1613:0:0:0,-13.8474,-145.457	0/0:73:73,0:73:2591:0:0:0,-21.9752,-233.439
chr09	578912	.	A	G	87449.4	PASS	AB=0.452072;ABP=81.482;AC=134;AF=0.712766;AN=188;AO=4345;CIGAR=1X;DP=6511;DPB=6511;DPRA=70;EPP=9429.37;EPPR=4682.55;GTI=4;LEN=1;MEANALT=1.03226;MQM=56.9038;MQMR=59.7827;NS=94;NUMALT=1;ODDS=0.628786;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155024;QR=77500;RO=2163;RPL=4345;RPP=9438.06;RPPR=4691.22;RPR=0;RUN=1;SAF=4344;SAP=9429.37;SAR=1;SRF=2162;SRP=4691.22;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:30,33:30:1080:33:1173:-86.884,0,-78.5484	1/1:74:0,74:0:0:74:2642:-237.817,-22.2762,0	1/1:103:0,103:0:0:103:3681:-330.778,-31.0061,0	1/1:141:0,141:0:0:141:5060:-455.302,-42.4452,0	0/1:49:30,19:30:1080:19:680:-46.7382,0,-82.7612	0/1:43:22,21:22:792:21:752:-55.0402,0,-58.6614	1/1:107:0,106:0:0:106:3783:-340.113,-31.9092,0	1/1:85:1,84:1:36:84:2986:-265.099,-21.9893,0	0/1:106:53,53:53:1900:53:1904:-138.951,0,-139.368	1/1:68:0,68:0:0:68:2438:-219.222,-20.47,0	0/1:44:26,18:26:936:18:644:-45.0183,0,-71.3141	0/1:81:53,28:53:1896:28:985:-64.55,0,-146.53	0/1:77:47,30:47:1688:30:1071:-73.4895,0,-129.02	1/1:33:0,33:0:0:33:1159:-104.384,-9.93399,0	0/1:78:33,45:33:1188:45:1616:-122.179,0,-83.7452	0/1:48:24,24:24:864:24:860:-63.2307,0,-63.6331	1/1:18:0,18:0:0:18:638:-57.7283,-5.41854,0	1/1:31:0,31:0:0:31:1103:-99.5517,-9.33193,0	1/1:34:1,33:1:36:33:1172:-102.161,-6.63675,0	0/1:120:74,46:74:2652:46:1633:-111.065,0,-202.1	0/1:130:63,67:63:2233:67:2391:-175.996,0,-162.052	0/1:20:9,11:9:324:11:396:-29.9357,0,-23.4837	0/1:83:51,32:51:1808:32:1131:-76.3672,0,-138.013	0/1:80:44,36:44:1569:36:1292:-92.4391,0,-117.413	1/1:86:0,86:0:0:86:3080:-277.267,-25.8886,0	0/1:176:93,83:93:3340:83:2969:-214.316,0,-247.704	0/1:221:127,94:127:4556:94:3362:-235.491,0,-343.673	0/1:26:11,15:11:396:15:536:-40.726,0,-28.156	0/1:231:127,104:127:4540:104:3723:-265.402,0,-339	1/1:65:0,65:0:0:65:2315:-208.518,-19.567,0	1/1:66:1,65:1:36:65:2316:-203.917,-16.2697,0	1/1:10:0,10:0:0:10:360:-32.7263,-3.0103,0	1/1:8:0,8:0:0:8:288:-26.2518,-2.40824,0	1/1:4:0,4:0:0:4:144:-13.3099,-1.20412,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:9:0,9:0:0:9:324:-29.4839,-2.70927,0	0/1:176:90,86:90:3232:86:3057:-222.248,0,-237.836	1/1:58:0,58:0:0:58:2080:-187.381,-17.4597,0	0/1:43:18,25:18:640:25:888:-67.2694,0,-44.985	0/1:4:1,3:1:36:3:108:-8.86626,0,-2.39415	0/1:94:56,38:56:2012:38:1340:-92.5361,0,-153.056	0/1:33:12,21:12:432:21:752:-58.0387,0,-29.2872	0/1:119:79,40:79:2832:40:1420:-92.0021,0,-219.294	0/1:46:20,26:20:720:26:921:-68.8747,0,-51.2814	1/1:47:0,47:0:0:47:1642:-147.051,-14.1484,0	1/1:87:0,87:0:0:87:3094:-276.474,-26.1896,0	1/1:90:0,90:0:0:90:3198:-287.903,-27.0927,0	1/1:101:0,101:0:0:101:3601:-324.112,-30.404,0	0/1:84:50,34:50:1792:34:1220:-84.7693,0,-136.24	0/1:70:36,34:36:1284:34:1209:-87.9887,0,-94.7851	1/1:59:0,59:0:0:59:2120:-190.968,-17.7608,0	1/1:4:0,4:0:0:4:144:-13.3073,-1.20412,0	1/1:58:0,58:0:0:58:2054:-184.816,-17.4597,0	0/1:43:19,24:19:684:24:864:-65.1012,0,-48.9445	0/1:10:3,7:3:108:7:252:-20.0122,0,-6.97567	0/1:94:45,49:45:1620:49:1760:-130.295,0,-117.791	1/1:31:0,31:0:0:31:1103:-99.5361,-9.33193,0	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	1/1:11:0,11:0:0:11:396:-35.9656,-3.31133,0	0/1:69:38,31:38:1368:31:1103:-78.7643,0,-102.648	0/1:56:26,30:26:932:30:1067:-79.4389,0,-67.3412	0/1:8:7,1:7:252:1:36:-1.18832,0,-20.6207	1/1:169:0,169:0:0:169:6019:-539.487,-50.8741,0	0/1:103:66,37:66:2372:37:1328:-87.8231,0,-182.73	0/1:26:16,10:16:576:10:345:-23.5338,0,-44.3482	1/1:43:0,43:0:0:43:1544:-139.187,-12.9443,0	0/1:128:76,52:76:2720:52:1857:-128.8,0,-206.459	0/1:147:99,48:99:3533:48:1703:-107.572,0,-273.905	0/1:22:5,17:5:180:17:604:-48.0435,0,-9.9294	0/1:38:12,26:12:417:26:928:-72.364,0,-26.4103	0/1:26:13,12:13:468:12:423:-30.5303,0,-34.6112	0/1:11:7,4:7:252:4:144:-9.99596,0,-19.7176	0/1:57:33,24:33:1188:24:851:-59.7298,0,-90.0675	0/1:57:30,27:30:1076:27:964:-69.8844,0,-79.9639	0/1:91:53,38:53:1900:38:1360:-95.2483,0,-143.179	1/1:164:0,163:0:0:163:5825:-523.722,-49.0679,0	1/1:91:0,91:0:0:91:3260:-293.522,-27.3937,0	0/1:75:39,36:39:1404:36:1288:-93.6067,0,-104.081	1/1:8:0,8:0:0:8:284:-25.8966,-2.40824,0	1/1:68:3,65:3:104:65:2328:-199.975,-10.7672,0	0/1:56:31,25:31:1100:25:900:-64.4296,0,-82.4526	0/1:152:83,69:83:2968:69:2446:-174.215,0,-221.595	0/1:47:23,24:23:828:24:856:-63.1796,0,-60.6942	1/1:60:0,60:0:0:60:2142:-192.954,-18.0618,0	0/1:51:30,21:30:1076:21:748:-52.253,0,-81.7897	1/1:116:1,115:1:36:115:4077:-363.341,-31.3212,0	1/1:16:0,16:0:0:16:576:-52.1506,-4.81648,0	0/1:63:32,31:32:1144:31:1108:-80.93,0,-84.3034	1/1:75:0,75:0:0:75:2666:-240.101,-22.5773,0	1/1:35:0,35:0:0:35:1256:-113.28,-10.5361,0	0/1:92:46,46:46:1652:46:1643:-120.377,0,-121.243	0/1:66:43,23:43:1540:23:820:-54.2178,0,-119.022	1/1:136:1,135:1:36:135:4838:-431.518,-37.3418,0	1/1:107:0,107:0:0:107:3821:-343.774,-32.2102,0
chr09	690880	.	AT	AG,CG	97514.6	PASS	AB=0.543599,0.454671;ABP=50.7256,54.5877;AC=130,58;AF=0.691489,0.308511;AN=188;AO=3354,1320;CIGAR=1M1X,2X;DP=4683;DPB=4683;DPRA=50.8804,1.11395;EPP=7277.45,2869.35;EPPR=5.18177;GTI=1;LEN=1,2;MEANALT=1.71739,2.06667;MQM=59.9896,59.978;MQMR=60;NS=94;NUMALT=2;ODDS=1.78588;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=119490,46275;QR=36;RO=1;RPL=1,0;RPP=7277.45,2869.35;RPPR=5.18177;RPR=3353,1320;RUN=1,1;SAF=0,0;SAP=7286.13,2869.35;SAR=3354,1320;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:29:0,12,17:0:0:12,17:424,606:-84.2804,-49.7541,-46.1418,-34.8808,0,-29.7632	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/1:64:0,62,1:0:0:62,1:2211,36:-198.958,-18.6639,0,-196.02,-15.6615,-195.719	1/1:95:0,95,0:0:0:95,0:3391,0:-305.405,-28.5979,0,-305.405,-28.5979,-305.405	1/2:35:0,17,18:0:0:17,18:608,631:-101.278,-51.6977,-46.5802,-49.9345,0,-44.516	1/2:17:0,11,6:0:0:11,6:396,200:-48.848,-16.5192,-13.2079,-32.6714,0,-30.8652	1/1:56:0,56,0:0:0:56,0:2003,0:-180.543,-16.8577,0,-180.543,-16.8577,-180.543	1/1:49:0,48,0:0:0:48,0:1685,0:-151.68,-14.4494,0,-151.68,-14.4494,-151.68	1/2:73:0,47,26:0:0:47,26:1663,926:-211.283,-75.8317,-61.6833,-135.806,0,-127.98	1/1:43:0,43,0:0:0:43,0:1536,0:-138.533,-12.9443,0,-138.533,-12.9443,-138.533	1/2:38:0,25,13:0:0:25,13:892,426:-107.476,-34.7394,-27.2136,-73.0739,0,-69.1605	1/2:80:0,46,34:0:0:46,34:1644,1156:-228.159,-94.1047,-80.2573,-134.401,0,-124.166	1/2:57:0,29,27:0:0:29,27:1044,952:-162.804,-77.6133,-68.8834,-85.2913,0,-77.1635	1/1:45:0,45,0:0:0:45,0:1620,0:-146.09,-13.5464,0,-146.09,-13.5464,-146.09	1/2:57:0,27,30:0:0:27,30:952,1072:-165.274,-87.7618,-79.634,-77.8674,0,-68.8365	1/2:37:0,23,14:0:0:23,14:824,502:-108.504,-41.3028,-34.3791,-67.5596,0,-63.3452	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:24:0,24,0:0:0:24,0:842,0:-76.0971,-7.22472,0,-76.0971,-7.22472,-76.0971	1/1:14:0,14,0:0:0:14,0:495,0:-44.883,-4.21442,0,-44.883,-4.21442,-44.883	1/2:128:0,64,63:0:0:64,63:2287,2254:-370.375,-183.906,-164.64,-186.574,0,-167.609	1/2:70:0,47,23:0:0:47,23:1676,827:-204.451,-67.8303,-53.6819,-136.979,0,-130.055	1/2:72:0,29,43:0:0:29,43:1036,1506:-207.356,-122.886,-114.156,-84.824,0,-71.8798	1/2:72:0,34,38:0:0:34,38:1211,1322:-206.544,-107.836,-97.6006,-99.0605,0,-87.6214	1/2:10:0,5,5:0:0:5,5:165,180:-28.3705,-15.0469,-13.5418,-13.6685,0,-12.1633	1/1:41:0,41,0:0:0:41,0:1457,0:-131.424,-12.3422,0,-131.424,-12.3422,-131.424	1/2:149:0,69,80:0:0:69,80:2471,2833:-432.642,-231.126,-210.355,-201.872,0,-177.79	1/2:90:0,55,35:0:0:55,35:1961,1202:-257.801,-97.9417,-81.385,-160.208,0,-149.672	1/2:24:0,6,18:0:0:6,18:207,627:-68.1514,-51.3364,-49.5302,-17.1607,0,-11.7422	1/2:117:0,86,31:0:0:86,31:3076,1091:-339.993,-89.1664,-63.2778,-251.18,0,-241.848	1/1:56:0,56,0:0:0:56,0:2012,0:-181.353,-16.8577,0,-181.353,-16.8577,-181.353	1/2:60:0,39,21:0:0:39,21:1389,745:-174.264,-61.0528,-49.3126,-113.567,0,-107.245	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:14:0,14,0:0:0:14,0:495,0:-44.883,-4.21442,0,-44.883,-4.21442,-44.883	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:150:0,79,71:0:0:79,71:2816,2461:-429.921,-200.373,-176.591,-229.899,0,-208.526	1/1:99:0,99,0:0:0:99,0:3493,0:-314.581,-29.802,0,-314.581,-29.802,-314.581	1/2:20:0,10,10:0:0:10,10:360,334:-56.7594,-27.3723,-24.362,-29.734,0,-26.7237	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:56:0,29,27:0:0:29,27:1031,952:-161.886,-77.8673,-69.1374,-84.3727,0,-76.2449	1/2:29:0,10,19:0:0:10,19:356,663:-83.2915,-54.274,-51.2637,-29.3709,0,-23.6514	1/2:55:0,34,21:0:0:34,21:1192,722:-155.975,-58.9742,-48.7392,-97.3474,0,-91.0257	1/2:37:0,21,16:0:0:21,16:743,562:-106.613,-46.093,-39.7714,-60.8717,0,-56.0552	1/1:23:0,23,0:0:0:23,0:811,0:-73.31,-6.92369,0,-73.31,-6.92369,-73.31	1/1:69:0,69,0:0:0:69,0:2443,0:-220.123,-20.7711,0,-220.123,-20.7711,-220.123	1/1:59:0,59,0:0:0:59,0:2112,0:-190.349,-17.7608,0,-190.349,-17.7608,-190.349	1/1:90:0,89,1:0:0:89,1:3148,28:-283.266,-26.7917,0,-281.048,-24.293,-280.747	1/2:48:0,31,17:0:0:31,17:1104,604:-139.557,-49.5735,-40.2416,-90.3387,0,-85.2212	1/2:43:0,28,15:0:0:28,15:991,535:-124.688,-43.9692,-35.5404,-81.0747,0,-76.5592	1/1:28:0,28,0:0:0:28,0:984,0:-88.8707,-8.42884,0,-88.8707,-8.42884,-88.8707	1/2:10:0,3,7:0:0:3,7:108,250:-29.5526,-20.7395,-19.8364,-9.17208,0,-7.06487	1/1:97:0,97,0:0:0:97,0:3464,0:-311.97,-29.1999,0,-311.97,-29.1999,-311.97	1/2:34:0,21,13:0:0:21,13:756,459:-99.4212,-37.7312,-31.4095,-62.0456,0,-58.1322	1/2:6:0,2,4:0:0:2,4:57,144:-16.6109,-12.1095,-11.5074,-4.81125,0,-3.60713	1/2:50:0,26,23:0:0:26,23:936,809:-142.223,-65.8464,-58.0196,-76.3729,0,-69.4492	1/1:13:0,12,1:0:0:12,1:432,36:-38.8614,-3.61236,0,-35.924,-0.315115,-35.6229	1/2:6:0,4,2:0:0:4,2:144,72:-17.9843,-6.234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chr09	762181	.	G	A	135843	PASS	AB=0.52185;ABP=66.6825;AC=94;AF=0.5;AN=188;AO=8016;CIGAR=1X;DP=15371;DPB=15371;DPRA=25.6823;EPP=17409.5;EPPR=15965.5;GTI=3;LEN=1;MEANALT=1.04348;MQM=59.1791;MQMR=59.9396;NS=94;NUMALT=1;ODDS=4.20435;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284664;QR=262986;RO=7351;RPL=0;RPP=17409.5;RPPR=15965.5;RPR=8016;RUN=1;SAF=8016;SAP=17409.5;SAR=0;SRF=7351;SRP=15965.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:35,26:35:1252:26:932:-65.7792,0,-94.6222	0/1:312:85,227:85:3048:227:7943:-620.744,0,-180.401	0/1:324:110,214:110:3944:214:7672:-591.946,0,-257.618	0/1:404:151,252:151:5377:252:9006:-688.177,0,-362.375	0/1:170:88,82:88:3152:82:2925:-212.193,0,-232.728	0/1:146:74,72:74:2648:72:2565:-187.019,0,-194.611	0/1:421:199,222:199:7097:222:7820:-575.569,0,-512.058	0/1:317:116,201:116:4160:201:7183:-550.37,0,-279.129	0/1:213:119,94:119:4256:94:3318:-234.661,0,-319.099	0/1:276:104,172:104:3724:172:6130:-466.546,0,-252.276	0/1:64:50,14:50:1792:14:496:-25.6714,0,-142.297	0/1:95:53,42:53:1896:42:1508:-107.387,0,-142.32	0/1:72:42,30:42:1499:30:1076:-75.2768,0,-112.857	0/1:120:64,56:64:2288:56:1973:-141.338,0,-170.058	0/1:73:39,34:39:1400:34:1207:-86.9555,0,-104.324	0/1:69:36,33:36:1284:33:1165:-84.3271,0,-95.0923	0/1:150:81,69:81:2904:69:2437:-174.3,0,-216.311	0/1:111:56,55:56:1989:55:1976:-144.669,0,-145.868	0/1:52:20,32:20:720:32:1148:-87.9715,0,-49.4752	0/1:364:212,152:212:7593:152:5422:-378.101,0,-573.74	0/1:296:135,161:135:4825:161:5533:-408.922,0,-345.294	0/1:156:109,47:109:3920:47:1665:-103.094,0,-306.03	0/1:64:37,27:37:1324:27:960:-67.4054,0,-100.151	0/1:193:116,77:116:4156:77:2695:-184.533,0,-316.122	0/1:137:85,52:85:3037:52:1856:-125.953,0,-232.317	0/1:463:244,219:244:8737:219:7810:-563.017,0,-646.827	0/1:230:134,96:134:4785:96:3440:-240.501,0,-361.569	0/1:31:17,14:17:612:14:504:-36.3615,0,-46.0815	0/1:355:184,171:184:6543:171:6048:-435.409,0,-482.017	0/1:201:104,97:104:3721:97:3439:-249.076,0,-274.582	0/1:127:91,36:91:3252:36:1247:-74.2406,0,-254.67	0/1:10:1,9:1:32:9:324:-26.4956,0,-0.189013	0/1:16:8,8:8:288:8:273:-20.0837,0,-21.4509	1/1:1:0,1:0:0:1:36:-3.59142,-0.30103,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:213:126,87:126:4520:87:3086:-213.616,0,-342.847	0/1:369:153,216:153:5477:216:7668:-578.774,0,-381.975	0/1:82:58,24:58:2084:24:856:-52.6766,0,-163.142	1/1:2:0,2:0:0:2:72:-6.78945,-0.60206,0	0/1:240:132,108:132:4732:108:3835:-273.078,0,-353.791	0/1:45:30,15:30:1076:15:540:-35.3331,0,-83.6065	0/1:263:124,138:124:4433:138:4787:-350.975,0,-319.91	0/1:87:58,29:58:2084:29:1012:-65.1663,0,-161.64	0/1:83:41,42:41:1457:42:1496:-109.887,0,-106.438	0/1:338:108,230:108:3876:230:8135:-629.542,0,-247.286	0/1:199:72,127:72:2580:127:4507:-345.732,0,-172.544	0/1:328:88,240:88:3164:240:8589:-673.726,0,-186.246	0/1:219:94,125:94:3368:125:4450:-334.71,0,-237.409	0/1:170:111,59:111:3961:59:2112:-139.143,0,-305.505	0/1:411:142,268:142:5084:268:9585:-737.648,0,-333.922	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:321:134,187:134:4773:187:6637:-500.047,0,-333.097	0/1:103:33,70:33:1172:70:2489:-193.147,0,-74.7814	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8263	0/1:217:127,90:127:4536:90:3219:-224.544,0,-343.085	0/1:119:60,59:60:2148:59:2070:-150.405,0,-157.765	0/1:8:7,1:7:252:1:36:-1.18744,0,-20.6207	0/1:48:23,25:23:824:25:900:-66.8604,0,-60.0339	0/1:125:76,49:76:2728:49:1760:-121.051,0,-208.133	0/1:126:78,48:78:2800:48:1713:-116.365,0,-214.308	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:326:95,230:95:3400:230:8180:-637.168,0,-207.976	0/1:310:163,147:163:5828:147:5218:-376.112,0,-431.306	0/1:135:76,59:76:2724:59:2085:-147.227,0,-204.764	0/1:155:38,117:38:1364:117:4204:-330.365,0,-76.4011	0/1:321:171,150:171:6125:150:5323:-382.354,0,-454.636	0/1:145:102,43:102:3652:43:1540:-95.2422,0,-285.19	0/1:22:16,6:16:572:6:201:-11.792,0,-45.1908	0/1:109:81,28:81:2884:28:993:-56.8565,0,-226.985	0/1:91:54,37:54:1936:37:1316:-91.2513,0,-147.123	0/1:30:16,14:16:572:14:500:-36.2767,0,-42.7825	0/1:186:117,69:117:4184:69:2462:-165.684,0,-320.751	0/1:114:60,54:60:2129:54:1925:-138.832,0,-157.559	0/1:301:196,105:196:7012:105:3682:-240.798,0,-540.478	0/1:282:92,190:92:3284:190:6813:-527.386,0,-210.89	0/1:283:88,195:88:3152:195:6889:-534.398,0,-198.714	0/1:123:60,63:60:2156:63:2241:-164.89,0,-157.28	0/1:17:8,9:8:284:9:320:-23.9956,0,-20.7858	0/1:225:73,152:73:2600:152:5437:-421.027,0,-166.504	0/1:180:107,73:107:3821:73:2593:-179.367,0,-289.901	0/1:414:245,169:245:8761:169:6046:-419.441,0,-663.852	0/1:106:61,45:61:2188:45:1574:-109.981,0,-164.905	0/1:88:45,43:45:1600:43:1516:-110.199,0,-117.8	0/1:85:52,33:52:1868:33:1157:-78.7123,0,-142.812	0/1:185:42,143:42:1496:143:5052:-399.026,0,-79.244	0/1:55:20,35:20:716:35:1237:-95.0031,0,-48.2111	0/1:81:48,33:48:1716:33:1188:-82.8121,0,-130.342	0/1:143:53,90:53:1895:90:3216:-246.513,0,-127.78	0/1:71:44,27:44:1576:27:964:-65.6753,0,-120.758	0/1:84:55,29:55:1972:29:1021:-66.8677,0,-152.468	0/1:79:56,23:56:2008:23:824:-50.6723,0,-157.212	0/1:209:42,167:42:1508:167:5897:-467.336,0,-73.0993	0/1:169:73,96:73:2611:96:3440:-258.792,0,-184.363
chr09	762254	.	A	G	104269	PASS	AB=0.457163;ABP=226.628;AC=93;AF=0.494681;AN=188;AO=6414;CIGAR=1X;DP=14032;DPB=14032;DPRA=75.4301;EPP=13930.8;EPPR=16523.6;GTI=1;LEN=1;MEANALT=1.06452;MQM=59.9732;MQMR=59.9754;NS=94;NUMALT=1;ODDS=105.01;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228027;QR=271267;RO=7612;RPL=1;RPP=13922.1;RPPR=16532.3;RPR=6413;RUN=1;SAF=1;SAP=13922.1;SAR=6413;SRF=1;SRP=16523.6;SRR=7611;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:28,20:28:993:20:716:-50.3183,0,-75.2331	0/1:180:105,75:105:3760:75:2665:-185.909,0,-284.386	0/1:334:111,223:111:3959:223:7941:-614.171,0,-255.95	0/1:324:136,188:136:4847:188:6695:-505.091,0,-338.848	0/1:91:50,41:50:1787:41:1459:-104.212,0,-133.718	0/1:102:58,44:58:2088:44:1549:-108.994,0,-157.485	0/1:385:166,219:166:5931:219:7819:-587.842,0,-418.003	0/1:268:116,152:116:4147:152:5351:-401.006,0,-292.72	0/1:97:47,50:47:1692:50:1781:-131.372,0,-123.367	0/1:187:102,85:102:3651:85:2994:-213.397,0,-272.501	0/1:122:69,53:69:2468:53:1895:-134.102,0,-185.648	0/1:111:71,40:71:2529:40:1427:-95.3124,0,-194.446	0/1:122:64,58:64:2284:58:2067:-149.575,0,-169.096	0/1:244:92,152:92:3259:152:5341:-407.373,0,-219.852	0/1:65:43,22:43:1528:22:788:-51.6778,0,-118.246	0/1:83:59,24:59:2087:24:856:-52.3751,0,-163.114	0/1:203:89,114:89:3187:114:4060:-304.477,0,-225.939	0/1:124:59,65:59:2092:65:2315:-171.282,0,-151.22	0/1:107:48,58:48:1698:58:2036:-151.241,0,-120.836	0/1:318:227,91:227:8128:91:3252:-197.169,0,-635.805	0/1:124:81,43:81:2875:43:1518:-99.5839,0,-221.653	0/1:174:120,54:120:4261:54:1931:-121.687,0,-331.288	0/1:43:27,16:27:972:16:572:-38.8691,0,-74.8536	0/1:174:122,52:122:4333:52:1857:-115.028,0,-337.765	0/1:198:96,102:96:3423:102:3618:-266.221,0,-248.673	0/1:379:264,114:264:9365:114:4012:-247.119,0,-728.67	0/1:200:115,85:115:4087:85:3033:-212.994,0,-307.81	0/1:47:36,11:36:1287:11:383:-20.6548,0,-101.984	0/1:309:188,120:188:6722:120:4278:-292.121,0,-511.978	0/1:209:98,111:98:3482:111:3946:-292.398,0,-250.674	0/1:182:117,65:117:4195:65:2294:-151.93,0,-322.942	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:29:21,8:21:739:8:284:-17.1735,0,-58.1025	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:27:8,19:8:288:19:676:-53.0402,0,-18.1396	0/1:198:106,92:106:3764:92:3272:-235.095,0,-279.356	0/1:363:164,199:164:5858:199:7100:-529.786,0,-418.058	0/1:136:83,53:83:2963:53:1887:-129.168,0,-225.963	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:212:166,46:166:5913:46:1637:-83.7984,0,-468.46	0/1:68:47,21:47:1684:21:756:-47.8972,0,-131.377	0/1:187:113,74:113:4011:74:2622:-179.932,0,-304.887	0/1:82:47,35:47:1661:35:1247:-87.8496,0,-124.901	0/1:98:41,56:41:1457:56:1967:-147.743,0,-101.864	0/1:165:77,88:77:2755:88:3143:-233.426,0,-198.521	0/1:170:72,98:72:2573:98:3471:-261.426,0,-180.643	0/1:159:92,67:92:3289:67:2408:-169.095,0,-248.364	0/1:157:108,48:108:3851:48:1713:-107.172,0,-299.506	0/1:173:106,67:106:3746:67:2399:-164.088,0,-285.26	0/1:361:140,221:140:5015:221:7872:-599.834,0,-342.824	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:275:123,152:123:4416:152:5421:-405.235,0,-314.823	0/1:127:57,70:57:2043:70:2453:-182.792,0,-145.91	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	0/1:168:118,50:118:4194:50:1768:-108.827,0,-326.962	0/1:96:54,42:54:1917:42:1499:-106.305,0,-143.906	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:38:4,34:4:144:34:1216:-98.3074,0,-1.87448	0/1:124:78,46:78:2796:46:1635:-110.11,0,-214.544	0/1:208:137,71:137:4892:71:2526:-164.905,0,-377.819	0/1:11:8,3:8:284:3:104:-6.39148,0,-22.592	0/1:226:73,152:73:2615:152:5410:-418.938,0,-167.505	0/1:204:136,68:136:4840:68:2444:-158.804,0,-374.345	0/1:121:84,37:84:3012:37:1332:-83.7578,0,-234.886	0/1:128:55,73:55:1937:73:2608:-196.437,0,-136.07	0/1:175:107,68:107:3814:68:2392:-162.857,0,-290.777	0/1:169:116,53:116:4126:53:1897:-120.133,0,-320.649	0/1:59:35,24:35:1243:24:855:-59.5094,0,-94.4131	0/1:150:107,43:107:3806:43:1524:-92.2967,0,-297.582	0/1:119:73,46:73:2593:46:1640:-112.066,0,-197.795	0/1:33:18,15:18:633:15:523:-37.4645,0,-47.3611	0/1:192:115,77:115:4090:77:2736:-188.686,0,-310.472	0/1:99:67,32:67:2395:32:1118:-71.1215,0,-186.005	0/1:328:202,126:202:7210:126:4483:-304.902,0,-550.218	0/1:192:101,91:101:3624:91:3250:-234.923,0,-268.567	0/1:266:96,170:96:3395:170:6035:-463.178,0,-225.691	0/1:127:91,36:91:3215:36:1284:-77.6326,0,-251.342	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/1:139:56,83:56:2016:83:2952:-224.071,0,-139.87	0/1:207:154,53:154:5494:53:1884:-107.523,0,-432.272	0/1:355:205,150:205:7302:150:5371:-376.655,0,-550.366	0/1:118:59,59:59:2088:59:2085:-152.397,0,-152.666	0/1:102:44,58:44:1553:58:2054:-154.425,0,-109.354	0/1:73:48,25:48:1703:25:900:-59.3458,0,-131.58	0/1:166:52,114:52:1847:114:4066:-316.156,0,-116.538	0/1:61:25,36:25:900:36:1268:-96.0571,0,-62.9582	0/1:95:66,29:66:2340:29:1044:-65.677,0,-182.26	0/1:163:64,99:64:2274:99:3525:-268.391,0,-155.853	0/1:141:53,88:53:1882:88:3102:-236.964,0,-127.21	0/1:204:122,82:122:4319:82:2914:-201.085,0,-327.161	0/1:62:46,16:46:1624:16:567:-32.6975,0,-127.782	0/1:161:58,103:58:2080:103:3637:-279.065,0,-139.004	0/1:137:60,77:60:2135:77:2742:-205.781,0,-151.176
chr09	762296	.	A	G	63856.9	PASS	AB=0.340603;ABP=3099.46;AC=93;AF=0.494681;AN=188;AO=4779;CIGAR=1X;DP=14033;DPB=14033;DPRA=75.4355;EPP=10380.5;EPPR=20078.3;GTI=1;LEN=1;MEANALT=1.09677;MQM=59.9684;MQMR=59.9818;NS=94;NUMALT=1;ODDS=70.2428;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170027;QR=331226;RO=9245;RPL=4779;RPP=10380.5;RPPR=20078.3;RPR=0;RUN=1;SAF=0;SAP=10380.5;SAR=4779;SRF=0;SRP=20078.3;SRR=9245;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:38,8:38:1368:8:284:-11.6967,0,-109.214	0/1:183:77,106:77:2772:106:3772:-284.563,0,-194.632	0/1:334:225,109:225:8065:109:3839:-245.167,0,-625.321	0/1:320:186,133:186:6660:133:4721:-328.784,0,-503.238	0/1:94:74,20:74:2649:20:712:-36.1098,0,-210.358	0/1:101:87,14:87:3128:14:492:-14.2083,0,-251.341	0/1:392:222,170:222:7968:170:6088:-430.018,0,-599.136	0/1:266:152,114:152:5428:114:4031:-282.902,0,-408.526	0/1:96:77,19:77:2752:19:684:-32.9914,0,-219.023	0/1:193:87,106:87:3116:106:3772:-281.58,0,-222.568	0/1:121:86,35:86:3076:35:1248:-76.2002,0,-240.644	0/1:112:77,35:77:2764:35:1252:-79.2626,0,-215.286	0/1:123:87,35:87:3128:35:1227:-73.6472,0,-244.66	0/1:240:149,91:149:5340:91:3239:-219.485,0,-408.485	0/1:66:43,23:43:1548:23:824:-54.6153,0,-119.745	0/1:84:57,27:57:2048:27:964:-61.7903,0,-159.305	0/1:195:112,83:112:4020:83:2971:-208.922,0,-303.287	0/1:120:63,57:63:2264:57:2040:-147.748,0,-167.899	0/1:103:58,45:58:2084:45:1604:-113.644,0,-156.824	0/1:321:228,93:228:8184:93:3308:-201.31,0,-639.94	0/1:119:91,28:91:3238:28:992:-53.7718,0,-255.812	0/1:169:131,38:131:4692:38:1368:-72.5468,0,-371.566	0/1:48:29,19:29:1044:19:668:-45.9962,0,-79.8254	0/1:176:121,55:121:4332:55:1956:-123.334,0,-337.074	0/1:195:101,94:101:3628:94:3302:-238.7,0,-268.023	0/1:375:280,95:280:10005:95:3361:-189.822,0,-787.502	0/1:203:162,41:162:5794:41:1456:-70.2269,0,-460.462	0/1:46:31,15:31:1108:15:540:-35.0892,0,-86.1836	0/1:312:244,67:244:8729:67:2400:-122.277,0,-691.619	0/1:209:114,94:114:4080:94:3360:-239.643,0,-304.395	0/1:187:119,68:119:4261:68:2416:-161.404,0,-327.354	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:30:8,22:8:288:22:776:-61.1313,0,-17.2365	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:27:19,8:19:669:8:288:-18.1396,0,-52.4061	0/1:201:160,41:160:5748:41:1456:-70.8289,0,-456.926	0/1:366:203,163:203:7257:163:5820:-413.738,0,-543.005	0/1:138:104,34:104:3723:34:1203:-67.0329,0,-293.728	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:212:135,77:135:4844:77:2748:-183.744,0,-372.294	0/1:71:45,26:45:1620:26:928:-62.4651,0,-124.717	0/1:179:133,45:133:4761:45:1596:-89.9872,0,-374.702	0/1:85:57,27:57:2044:27:964:-61.5294,0,-158.686	0/1:97:57,40:57:2048:40:1420:-98.8975,0,-155.392	0/1:169:91,78:91:3272:78:2768:-198.489,0,-243.825	0/1:170:97,73:97:3480:73:2589:-181.713,0,-262.236	0/1:160:67,93:67:2408:93:3316:-250.493,0,-168.811	0/1:155:109,46:109:3881:46:1644:-101.589,0,-302.825	0/1:175:138,37:138:4956:37:1301:-64.709,0,-393.507	0/1:359:221,138:221:7928:138:4908:-333.805,0,-605.472	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:279:157,122:157:5613:122:4356:-308.224,0,-421.303	0/1:126:69,56:69:2444:56:2000:-142.285,0,-182.226	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:171:127,44:127:4514:44:1571:-90.0995,0,-354.952	0/1:93:42,51:42:1492:51:1812:-135.366,0,-106.579	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:36:32,4:32:1148:4:144:-2.47654,0,-92.7928	0/1:125:93,32:93:3344:32:1136:-64.9201,0,-263.539	0/1:205:147,58:147:5276:58:2055:-123.511,0,-412.773	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:228:155,73:155:5552:73:2597:-165.344,0,-431.158	0/1:201:163,37:163:5852:37:1332:-59.6166,0,-466.224	0/1:124:75,49:75:2688:49:1752:-120.636,0,-204.837	0/1:126:72,54:72:2584:54:1920:-135.147,0,-194.879	0/1:169:125,44:125:4476:44:1576:-91.2575,0,-352.135	0/1:167:142,25:142:5088:25:892:-30.3277,0,-407.791	0/1:60:41,19:41:1472:19:676:-43.1062,0,-114.714	0/1:148:99,49:99:3526:49:1724:-110.893,0,-272.995	0/1:120:88,32:88:3160:32:1140:-66.7856,0,-248.5	0/1:35:23,12:23:828:12:432:-28.6851,0,-64.3081	0/1:193:135,58:135:4817:58:2060:-127.555,0,-375.586	0/1:104:72,32:72:2564:32:1138:-71.4217,0,-199.704	0/1:322:241,81:241:8621:81:2838:-158.727,0,-678.953	0/1:195:93,102:93:3340:102:3636:-268.746,0,-242.116	0/1:261:171,90:171:6121:90:3177:-207.588,0,-472.415	0/1:126:97,29:97:3480:29:1040:-55.9846,0,-275.481	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/1:140:83,57:83:2984:57:2040:-141.728,0,-226.647	0/1:203:146,57:146:5232:57:2028:-121.684,0,-409.908	0/1:361:276,85:276:9892:85:3028:-164.08,0,-781.548	0/1:123:93,30:93:3333:30:1072:-59.7658,0,-263.159	0/1:105:59,46:59:2120:46:1639:-116.191,0,-159.46	0/1:73:49,24:49:1756:24:856:-55.3859,0,-136.349	0/1:167:117,50:117:4161:50:1775:-109.761,0,-324.402	0/1:59:34,25:34:1216:25:886:-62.2977,0,-91.9858	0/1:94:63,31:63:2268:31:1099:-70.9226,0,-176.085	0/1:161:98,63:98:3528:63:2259:-155.107,0,-269.262	0/1:141:88,53:88:3156:53:1863:-125.503,0,-241.819	0/1:211:152,59:152:5456:59:2090:-124.832,0,-427.649	0/1:59:46,13:46:1656:13:464:-24.3367,0,-131.568	0/1:159:102,57: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chr09	794072	.	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chr09	865418	.	G	T	114784	PASS	AB=0.486607;ABP=14.5269;AC=132;AF=0.702128;AN=188;AO=8443;CIGAR=1X;DP=12244;DPB=12244;DPRA=0;EPP=18336.8;EPPR=8226.4;GTI=0;LEN=1;MEANALT=1.02128;MQM=29.1079;MQMR=50.4377;NS=94;NUMALT=1;ODDS=1.79771;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302819;QR=134830;RO=3799;RPL=8443;RPP=18336.8;RPPR=8226.4;RPR=0;RUN=1;SAF=0;SAP=18336.8;SAR=8443;SRF=0;SRP=8252.43;SRR=3799;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:33,33:33:1154:33:1180:-57.152,0,-84.0702	1/1:295:0,295:0:0:295:10580:-699.373,-88.8039,0	1/1:220:0,220:0:0:220:7893:-518.836,-66.2266,0	1/1:234:0,234:0:0:234:8400:-625.683,-70.441,0	0/1:149:72,77:72:2555:77:2764:-160.864,0,-184.199	0/1:105:44,61:44:1547:61:2192:-114.139,0,-107.539	1/1:197:0,197:0:0:197:7057:-524.603,-59.3029,0	0/1:179:89,90:89:3183:90:3228:-160.505,0,-231.414	0/1:113:51,62:51:1806:62:2211:-112.079,0,-127.989	1/1:111:0,111:0:0:111:3963:-296.505,-33.4143,0	0/1:85:45,40:45:1612:40:1440:-81.4551,0,-118.39	0/1:58:32,26:32:1140:26:936:-43.3337,0,-85.0518	0/1:66:39,27:39:1383:27:972:-44.2137,0,-103.755	1/1:78:0,78:0:0:78:2792:-208.447,-23.4803,0	0/1:57:31,26:31:1103:26:936:-53.4021,0,-81.801	0/1:48:20,28:20:708:28:1008:-59.6441,0,-49.1909	1/1:85:0,85:0:0:85:3044:-202.012,-25.5876,0	1/1:52:0,52:0:0:52:1872:-123.296,-15.6536,0	1/1:44:0,44:0:0:44:1584:-104.396,-13.2453,0	0/1:394:181,212:181:6425:212:7620:-447.376,0,-455.789	0/1:200:98,102:98:3457:102:3656:-212.149,0,-249.474	0/1:120:84,36:84:2991:36:1288:-45.9395,0,-231.951	0/1:143:68,75:68:2418:75:2687:-156.829,0,-172.816	0/1:170:72,98:72:2555:98:3516:-209.141,0,-177.841	1/1:91:0,91:0:0:91:3260:-241.804,-27.3937,0	0/1:355:168,187:168:5941:187:6699:-323.336,0,-425.867	0/1:256:129,127:129:4594:127:4556:-262.408,0,-332.685	0/1:33:16,17:16:576:17:612:-35.9696,0,-42.0655	0/1:265:138,127:138:4894:127:4560:-212.507,0,-359.479	1/1:162:0,162:0:0:162:5799:-429.889,-48.7669,0	0/1:265:129,136:129:4586:136:4876:-282.55,0,-330.228	1/1:7:0,7:0:0:7:244:-18.8309,-2.10721,0	1/1:24:0,24:0:0:24:864:-64.5379,-7.22472,0	1/1:3:0,3:0:0:3:108:-7.41608,-0.90309,0	0/1:6:3,3:3:104:3:108:-5.6099,0,-7.69155	1/1:15:0,15:0:0:15:540:-35.7716,-4.51545,0	0/1:163:94,69:94:3338:69:2464:-109.967,0,-248.725	1/1:244:2,242:2:72:242:8681:-640.085,-66.637,0	0/1:78:33,45:33:1180:45:1616:-82.1234,0,-82.594	0/1:3:2,1:2:72:1:36:-2.07766,0,-5.91123	0/1:261:104,157:104:3682:157:5644:-341.397,0,-251.631	0/1:43:16,26:16:564:26:932:-56.1295,0,-37.8181	0/1:171:79,92:79:2814:92:3300:-192.278,0,-200.381	0/1:95:50,45:50:1775:45:1612:-92.2489,0,-130.509	0/1:62:35,27:35:1227:27:968:-53.3106,0,-91.0199	1/1:112:0,112:0:0:112:4016:-257.917,-33.7154,0	1/1:175:0,175:0:0:175:6259:-413.813,-52.6803,0	1/1:182:0,182:0:0:182:6521:-485.486,-54.7875,0	0/1:145:82,63:82:2927:63:2260:-125.754,0,-218.51	0/1:156:95,61:95:3392:61:2196:-116.351,0,-256.339	1/1:242:0,242:0:0:242:8679:-558.578,-72.8493,0	0/1:10:6,4:6:212:4:144:-8.01848,0,-16.3391	1/1:409:0,409:0:0:409:14682:-970.057,-123.121,0	1/1:67:0,67:0:0:67:2397:-154.517,-20.169,0	0/1:9:5,4:5:180:4:144:-6.92248,0,-13.8012	0/1:204:106,98:106:3752:98:3528:-200.46,0,-274.775	1/1:47:0,47:0:0:47:1684:-125.505,-14.1484,0	0/1:7:3,4:3:104:4:144:-7.36,0,-7.57298	1/1:8:0,8:0:0:8:288:-18.6786,-2.40824,0	0/1:150:81,69:81:2865:69:2468:-139.535,0,-211.65	0/1:98:51,47:51:1807:47:1688:-96.3095,0,-132.046	0/1:4:3,1:3:108:1:36:-1.53208,0,-8.82842	1/1:245:0,245:0:0:245:8783:-568.559,-73.7524,0	0/1:227:119,108:119:4222:108:3862:-218.968,0,-309.291	0/1:103:42,61:42:1504:61:2184:-131.812,0,-103.952	1/1:134:0,134:0:0:134:4808:-358.587,-40.338,0	0/1:317:157,160:157:5578:160:5752:-332.321,0,-402.63	0/1:166:103,63:103:3650:63:2258:-117.986,0,-276.564	1/1:32:0,32:0:0:32:1152:-85.4588,-9.63296,0	0/1:135:70,65:70:2482:65:2336:-114.119,0,-182.193	0/1:80:30,50:30:1068:50:1784:-91.7954,0,-71.8144	0/1:28:17,11:17:608:11:396:-20.934,0,-46.2019	0/1:111:60,51:60:2144:51:1824:-86.6759,0,-159.194	0/1:76:37,39:37:1319:39:1404:-70.1042,0,-95.6136	0/1:366:233,133:233:8239:133:4763:-242.742,0,-625.013	1/1:282:0,282:0:0:282:10121:-753.256,-84.8905,0	1/1:213:1,212:1:36:212:7595:-499.526,-60.5302,0	0/1:132:74,58:74:2611:58:2084:-97.4095,0,-194.638	1/1:17:0,17:0:0:17:608:-39.5798,-5.11751,0	1/1:197:0,197:0:0:197:7064:-526.163,-59.3029,0	0/1:149:74,75:74:2613:75:2700:-132.812,0,-189.101	0/1:303:163,140:163:5777:140:5024:-281.736,0,-424.154	0/1:97:47,50:47:1671:50:1796:-105.19,0,-119.905	1/1:56:1,55:1:36:55:1972:-142.725,-13.2746,0	0/1:73:45,28:45:1603:28:1004:-53.3163,0,-122.001	1/1:120:2,118:2:72:118:4227:-306.411,-29.3158,0	1/1:52:0,52:0:0:52:1868:-124.687,-15.6536,0	0/1:73:37,36:37:1320:36:1296:-64.1763,0,-96.6838	1/1:57:0,57:0:0:57:2048:-134.951,-17.1587,0	1/1:60:0,60:0:0:60:2152:-160.496,-18.0618,0	0/1:92:46,46:46:1622:46:1648:-95.5431,0,-117.963	0/1:72:52,20:52:1852:20:720:-31.6197,0,-143.784	1/1:206:0,206:0:0:206:7386:-547.029,-62.0122,0	1/1:77:0,77:0:0:77:2768:-205.67,-23.1793,0
chr09	865435	.	A	G	113831	PASS	AB=0.480888;ABP=26.5826;AC=132;AF=0.702128;AN=188;AO=8396;CIGAR=1X;DP=12261;DPB=12261;DPRA=0;EPP=18234.7;EPPR=8389.24;GTI=0;LEN=1;MEANALT=1.03191;MQM=29.097;MQMR=50.4076;NS=94;NUMALT=1;ODDS=0.342918;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=300957;QR=138284;RO=3862;RPL=8396;RPP=18234.7;RPPR=8389.24;RPR=0;RUN=1;SAF=0;SAP=18234.7;SAR=8396;SRF=0;SRP=8389.24;SRR=3862;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:36,33:36:1288:33:1188:-56.3712,0,-95.1752	1/1:295:0,295:0:0:295:10549:-698.924,-88.8039,0	1/1:212:0,212:0:0:212:7592:-500.526,-63.8184,0	1/1:237:0,237:0:0:237:8508:-633.818,-71.3441,0	0/1:149:73,76:73:2609:76:2720:-157.939,0,-188.91	0/1:108:47,61:47:1688:61:2192:-113.256,0,-119.261	1/1:194:0,194:0:0:194:6947:-517.441,-58.3998,0	0/1:178:88,90:88:3160:90:3220:-160.684,0,-229.785	0/1:111:50,61:50:1777:61:2188:-110.784,0,-126.076	1/1:113:0,113:0:0:113:4056:-302.557,-34.0164,0	0/1:86:46,40:46:1641:40:1421:-80.7216,0,-120.679	0/1:59:32,27:32:1148:27:972:-45.4166,0,-85.4616	0/1:65:39,26:39:1389:26:933:-42.7043,0,-105.187	1/1:79:0,79:0:0:79:2832:-211.251,-23.7814,0	0/1:57:31,26:31:1116:26:932:-53.2806,0,-82.9527	0/1:48:21,27:21:752:27:965:-56.8928,0,-53.1342	1/1:84:0,84:0:0:84:3009:-199.634,-25.2865,0	1/1:54:0,54:0:0:54:1936:-128.251,-16.2556,0	1/1:44:0,44:0:0:44:1579:-104.349,-13.2453,0	0/1:394:181,212:181:6481:212:7595:-445.959,0,-461.858	0/1:198:97,101:97:3484:101:3628:-210.277,0,-252.136	0/1:119:83,36:83:2972:36:1292:-46.2332,0,-230.458	0/1:143:70,73:70:2508:73:2616:-151.407,0,-180.688	0/1:168:71,97:71:2556:97:3472:-206.102,0,-178.461	1/1:90:0,90:0:0:90:3213:-238.46,-27.0927,0	0/1:361:174,187:174:6236:187:6707:-321.697,0,-450.329	0/1:257:129,128:129:4632:128:4600:-264.366,0,-335.747	0/1:35:18,17:18:648:17:612:-35.3675,0,-47.8777	0/1:263:136,127:136:4872:127:4533:-212.541,0,-357.451	1/1:157:0,157:0:0:157:5634:-417.719,-47.2617,0	0/1:263:127,136:127:4545:136:4873:-283.111,0,-327.131	1/1:8:0,8:0:0:8:288:-21.7595,-2.40824,0	1/1:25:0,25:0:0:25:900:-66.9996,-7.52575,0	1/1:3:0,3:0:0:3:108:-7.41608,-0.90309,0	0/1:6:3,3:3:108:3:108:-5.6099,0,-8.06392	1/1:16:0,16:0:0:16:570:-38.0807,-4.81648,0	0/1:164:96,68:96:3444:68:2434:-107,0,-257.97	1/1:244:3,241:3:108:241:8637:-633.529,-63.4446,0	0/1:78:34,44:34:1220:44:1569:-79.6791,0,-85.9177	0/1:3:2,1:2:57:1:36:-2.07766,0,-4.49866	0/1:264:108,156:108:3872:156:5588:-336.839,0,-267.406	0/1:44:16,28:16:576:28:995:-60.9679,0,-38.5891	0/1:170:78,92:78:2788:92:3296:-192.589,0,-198.465	0/1:101:57,44:57:2048:44:1580:-87.3692,0,-152.888	0/1:61:34,27:34:1201:27:960:-53.3686,0,-88.8332	1/1:111:0,111:0:0:111:3976:-255.338,-33.4143,0	1/1:174:0,174:0:0:174:6231:-411.648,-52.3792,0	1/1:177:0,177:0:0:177:6363:-473.403,-53.2823,0	0/1:148:85,63:85:3048:63:2264:-124.924,0,-228.458	0/1:157:97,60:97:3484:60:2160:-113.656,0,-264.246	1/1:242:0,242:0:0:242:8660:-558.04,-72.8493,0	0/1:10:6,4:6:216:4:144:-8.01848,0,-16.6965	1/1:403:0,403:0:0:403:14444:-955.853,-121.315,0	1/1:67:0,67:0:0:67:2408:-154.648,-20.169,0	0/1:9:5,4:5:180:4:144:-6.92248,0,-13.8012	0/1:203:108,95:108:3868:95:3412:-192.77,0,-285.181	1/1:47:0,47:0:0:47:1677:-125.385,-14.1484,0	0/1:7:3,4:3:104:4:144:-7.36,0,-7.56955	1/1:8:0,8:0:0:8:288:-18.6786,-2.40824,0	0/1:153:85,67:85:3040:67:2404:-133.65,0,-226.047	0/1:99:52,47:52:1864:47:1692:-96.0963,0,-136.791	0/1:5:4,1:4:144:1:36:-1.23105,0,-11.7521	1/1:241:0,241:0:0:241:8659:-559.718,-72.5482,0	0/1:222:117,105:117:4192:105:3765:-213.128,0,-308.417	0/1:102:42,60:42:1489:60:2152:-129.492,0,-102.916	1/1:133:0,133:0:0:133:4775:-356.012,-40.037,0	0/1:323:167,156:167:5938:156:5600:-319.512,0,-431.335	0/1:169:105,64:105:3753:64:2304:-120.019,0,-284.722	1/1:32:0,32:0:0:32:1148:-85.3373,-9.63296,0	0/1:138:72,66:72:2584:66:2360:-115.397,0,-190.34	0/1:81:32,49:32:1148:49:1764:-89.5147,0,-78.5299	0/1:27:16,11:16:572:11:395:-21.2213,0,-43.3835	0/1:111:60,51:60:2160:51:1813:-86.108,0,-160.74	0/1:76:37,39:37:1324:39:1396:-69.9819,0,-96.0623	0/1:364:232,132:232:8324:132:4727:-241.169,0,-633.065	1/1:283:0,282:0:0:282:10127:-752.813,-84.8905,0	1/1:212:1,211:1:36:211:7549:-497.524,-60.2291,0	0/1:137:77,60:77:2760:60:2160:-100.793,0,-206.324	1/1:17:0,17:0:0:17:605:-39.5575,-5.11751,0	1/1:197:0,197:0:0:197:7047:-524.401,-59.3029,0	0/1:150:76,74:76:2660:74:2653:-129.997,0,-192.9	0/1:305:167,138:167:6000:138:4960:-276.028,0,-443.332	0/1:103:54,49:54:1936:49:1756:-100.28,0,-141.759	1/1:56:1,55:1:36:55:1965:-142.475,-13.2746,0	0/1:71:44,27:44:1584:27:972:-51.3572,0,-120.88	1/1:119:2,117:2:72:117:4187:-304.273,-29.0148,0	1/1:52:0,52:0:0:52:1872:-124.748,-15.6536,0	0/1:74:38,36:38:1368:36:1288:-63.753,0,-100.684	1/1:58:0,58:0:0:58:2077:-137.253,-17.4597,0	1/1:63:0,63:0:0:63:2260:-168.544,-18.9649,0	0/1:91:45,46:45:1608:46:1652:-95.9655,0,-116.999	0/1:73:52,21:52:1868:21:744:-33.511,0,-144.889	1/1:207:0,207:0:0:207:7436:-549.913,-62.3132,0	1/1:77:0,77:0:0:77:2759:-204.906,-23.1793,0
chr09	870328	.	G	A	113723	PASS	AB=0.513529;ABP=11.3536;AC=133;AF=0.707447;AN=188;AO=6174;CIGAR=1X;DP=8740;DPB=8740;DPRA=0;EPP=13401;EPPR=5570.67;GTI=0;LEN=1;MEANALT=1.02128;MQM=31.7783;MQMR=53.7399;NS=94;NUMALT=1;ODDS=3.98265;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220219;QR=91024;RO=2564;RPL=3324;RPP=82.0316;RPPR=16.0324;RPR=2850;RUN=1;SAF=3325;SAP=82.6999;SAR=2849;SRF=1344;SRP=16.0324;SRR=1220;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:10,27:10:360:27:951:-66.9277,0,-21.5342	1/1:141:1,140:1:32:140:5015:-249.453,-39.2622,0	1/1:136:0,136:0:0:136:4842:-337.073,-40.9401,0	1/1:127:1,126:1:36:126:4511:-331.41,-34.6325,0	0/1:54:27,27:27:959:27:957:-56.2478,0,-69.4554	0/1:41:23,18:23:816:18:640:-24.1128,0,-61.0942	1/1:131:0,131:0:0:131:4708:-327.797,-39.4349,0	0/1:86:51,35:51:1806:35:1256:-42.8563,0,-135.718	0/1:92:43,49:43:1519:49:1752:-92.0516,0,-108.533	1/1:89:0,89:0:0:89:3196:-223.437,-26.7917,0	0/1:141:72,69:72:2529:69:2471:-135.08,0,-184.873	0/1:124:59,65:59:2056:65:2324:-120.22,0,-146.285	0/1:110:63,47:63:2244:47:1665:-74.3184,0,-167.79	1/1:134:0,134:0:0:134:4766:-307.767,-40.338,0	0/1:106:52,54:52:1823:54:1916:-104.253,0,-131.601	0/1:124:58,65:58:2045:65:2315:-112.934,0,-146.403	1/1:186:0,186:0:0:186:6623:-439.902,-55.9916,0	1/1:115:1,114:1:36:114:4029:-246.355,-31.0212,0	1/1:106:0,106:0:0:106:3754:-209.79,-31.9092,0	0/1:155:66,89:66:2351:89:3204:-183.9,0,-164.616	0/1:90:35,55:35:1252:55:1976:-112.842,0,-85.3964	0/1:40:27,13:27:972:13:464:-21.0637,0,-75.628	0/1:46:18,28:18:644:28:989:-57.5579,0,-44.3745	0/1:92:48,44:48:1701:44:1567:-85.3444,0,-125.239	1/1:58:0,58:0:0:58:2076:-152.771,-17.4597,0	0/1:156:77,79:77:2751:79:2795:-164.149,0,-200.309	0/1:130:62,67:62:2193:67:2400:-121.845,0,-157.571	0/1:74:34,40:34:1212:40:1440:-68.2366,0,-86.759	0/1:122:70,52:70:2496:52:1849:-105.986,0,-188.002	1/1:80:0,80:0:0:80:2868:-173.448,-24.0824,0	0/1:80:44,36:44:1576:36:1288:-65.1305,0,-117.718	1/1:13:0,13:0:0:13:468:-39.017,-3.91339,0	1/1:20:0,20:0:0:20:720:-50.2308,-6.0206,0	1/1:12:0,12:0:0:12:432:-17.2491,-3.61236,0	0/1:3:2,1:2:72:1:36:-2.61792,0,-5.895	1/1:15:0,15:0:0:15:529:-30.7229,-4.51545,0	0/1:299:148,151:148:5232:151:5403:-311.307,0,-379.385	1/1:68:0,68:0:0:68:2425:-144.423,-20.47,0	0/1:133:70,63:70:2467:63:2246:-95.0803,0,-181.19	0/1:2:1,1:1:36:1:36:-1.38727,0,-2.97671	0/1:138:72,66:72:2560:66:2362:-109.191,0,-188.517	0/1:70:37,33:37:1324:33:1186:-56.4356,0,-97.8172	0/1:86:30,56:30:1064:56:1976:-110.081,0,-69.9212	0/1:111:49,62:49:1738:62:2215:-128.365,0,-122.601	0/1:95:50,45:50:1717:45:1588:-88.6193,0,-125.051	1/1:60:0,60:0:0:60:2156:-163.478,-18.0618,0	1/1:78:0,78:0:0:78:2787:-150.105,-23.4803,0	1/1:117:3,114:3:104:114:4056:-283.548,-25.5331,0	0/1:71:25,46:25:880:46:1656:-73.86,0,-55.623	0/1:97:41,56:41:1464:56:1993:-107.323,0,-102.55	1/1:130:0,130:0:0:130:4656:-346.022,-39.1339,0	1/1:4:0,4:0:0:4:144:-9.62315,-1.20412,0	1/1:118:0,118:0:0:118:4206:-233.909,-35.5215,0	1/1:36:0,36:0:0:36:1292:-95.7895,-10.8371,0	0/1:12:5,7:5:171:7:244:-14.8502,0,-11.9915	0/1:93:49,44:49:1752:44:1560:-77.0157,0,-129.265	1/1:49:2,47:2:68:47:1673:-120.001,-8.29276,0	0/1:8:5,3:5:176:3:108:-4.4991,0,-13.7579	1/1:16:0,16:0:0:16:572:-39.9373,-4.81648,0	0/1:101:50,51:50:1792:51:1797:-87.0742,0,-130.658	0/1:166:74,92:74:2648:92:3282:-187.846,0,-188.183	0/1:7:2,5:2:72:5:176:-10.7177,0,-4.71831	1/1:88:0,88:0:0:88:3113:-239.73,-26.4906,0	0/1:103:42,61:42:1487:61:2175:-129.279,0,-102.112	0/1:66:34,32:34:1215:32:1144:-44.5063,0,-89.3544	1/1:63:0,63:0:0:63:2248:-163.824,-18.9649,0	0/1:103:48,55:48:1728:55:1957:-119.315,0,-124.5	0/1:77:51,26:51:1823:26:928:-33.3911,0,-140.67	1/1:84:0,84:0:0:84:2988:-192.224,-25.2865,0	0/1:72:30,42:30:1072:42:1500:-62.9227,0,-74.3252	0/1:151:73,78:73:2571:78:2791:-153.623,0,-184.196	0/1:27:8,19:8:284:19:675:-42.7455,0,-17.7221	0/1:64:24,40:24:848:40:1417:-79.757,0,-56.1618	0/1:88:42,46:42:1499:46:1652:-71.6356,0,-106.775	0/1:168:64,104:64:2291:104:3719:-194.582,0,-154.514	1/1:114:0,114:0:0:114:4070:-299.727,-34.3174,0	1/1:121:0,121:0:0:121:4297:-300.969,-36.4246,0	0/1:98:46,52:46:1636:52:1864:-66.2441,0,-116.514	1/1:4:0,4:0:0:4:144:-9.28271,-1.20412,0	1/1:104:0,104:0:0:104:3728:-250.11,-31.3071,0	0/1:94:50,44:50:1779:44:1567:-66.2439,0,-131.26	0/1:93:41,52:41:1456:52:1868:-109.567,0,-103.087	0/1:184:89,95:89:3153:95:3391:-189.759,0,-227.869	1/1:101:0,101:0:0:101:3593:-263.729,-30.404,0	0/1:138:80,58:80:2839:58:2071:-108.008,0,-213.096	1/1:223:5,218:5:176:218:7766:-554.94,-50.9664,0	1/1:59:0,59:0:0:59:2120:-127.903,-17.7608,0	0/1:107:57,50:57:2022:50:1765:-82.9318,0,-148.997	1/1:105:0,105:0:0:105:3743:-233.084,-31.6082,0	1/1:126:0,126:0:0:126:4481:-279.862,-37.9298,0	0/1:152:80,72:80:2851:72:2546:-113.836,0,-209.986	0/1:71:43,28:43:1548:28:1004:-50.6058,0,-117.538	1/1:58:0,58:0:0:58:2074:-146.968,-17.4597,0	1/1:203:0,203:0:0:203:7233:-537.113,-61.1091,0
chr09	870904	.	T	C	21684.8	PASS	AB=0.462332;ABP=38.8362;AC=55;AF=0.295699;AN=186;AO=1353;CIGAR=1X;DP=4781;DPB=4781;DPRA=1.14746;EPP=2915.01;EPPR=7377.45;GTI=1;LEN=1;MEANALT=1.05357;MQM=53.3296;MQMR=59.8429;NS=93;NUMALT=1;ODDS=1.57221;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48123;QR=122282;RO=3424;RPL=3;RPP=2915.01;RPPR=7377.45;RPR=1350;RUN=1;SAF=1353;SAP=2941.01;SAR=0;SRF=3424;SRP=7438.13;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:34,18:34:1212:18:631:-41.3614,0,-93.6691	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3852	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/0:95:92,3:92:3291:3:108:0,-18.537,-286.348	0/1:27:14,13:14:504:13:459:-33.4441,0,-37.5703	0/1:27:14,13:14:500:13:468:-34.262,0,-37.2084	0/0:99:99,0:99:3521:0:0:0,-29.802,-317.1	0/1:62:26,36:26:919:36:1281:-96.6704,0,-64.3447	0/1:101:56,45:56:1995:45:1595:-113.087,0,-149.413	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.5956	0/1:22:11,11:11:396:11:392:-28.9492,0,-29.3149	0/1:76:41,35:41:1451:35:1247:-89.4574,0,-108.007	0/1:46:20,26:20:716:26:915:-68.6315,0,-50.9203	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.98	0/1:49:24,25:24:860:25:900:-66.4298,0,-62.8414	0/1:48:28,20:28:1008:20:716:-50.1904,0,-76.5869	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:72:32,40:32:1152:40:1435:-107.519,0,-82.316	0/1:94:54,40:54:1923:40:1424:-99.9145,0,-145.047	0/1:52:13,39:13:464:39:1373:-107.785,0,-26.2527	0/1:62:32,30:32:1140:30:1031:-74.2665,0,-84.2453	0/1:43:26,17:26:936:17:610:-42.1585,0,-71.6152	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.599	0/1:129:82,47:82:2936:47:1675:-111.996,0,-225.581	0/1:156:97,59:97:3492:59:2075:-139.293,0,-267.5	0/1:8:2,6:2:72:6:212:-16.9826,0,-4.42848	0/1:157:103,54:103:3688:54:1932:-126.535,0,-284.861	0/0:67:67,0:67:2390:0:0:0,-20.169,-215.287	0/1:59:26,33:26:932:33:1175:-87.8656,0,-66.4381	.:.:.:.:.:.:.:.	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0557	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:2:1,1:1:36:1:36:-2.99111,0,-2.99621	0/0:6:5,0:5:176:0:0:0,-1.50515,-15.8265	0/1:111:62,48:62:2220:48:1694:-119.129,0,-166.692	0/0:114:114,0:114:4062:0:0:0,-34.3174,-365.749	0/1:17:9,8:9:324:8:282:-20.5621,0,-24.3883	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:56:25,31:25:900:31:1112:-83.3026,0,-64.4633	0/1:39:21,18:21:752:18:648:-46.1056,0,-56.2363	0/1:87:50,36:50:1800:36:1268:-87.9809,0,-136.034	0/1:24:16,8:16:576:8:284:-18.6442,0,-44.9365	0/1:30:13,17:13:464:17:612:-46.2144,0,-33.0666	0/0:149:149,0:149:5336:0:0:0,-44.8535,-480.307	0/0:65:65,0:65:2299:0:0:0,-19.5669,-207.084	0/0:75:75,0:75:2660:0:0:0,-22.5772,-239.643	0/1:50:35,15:35:1248:15:540:-33.7772,0,-97.5619	0/1:40:16,24:16:568:24:860:-65.4848,0,-39.3406	0/0:143:143,0:143:5107:0:0:0,-43.0473,-459.774	0/1:5:2,3:2:68:3:108:-8.55573,0,-4.95256	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:4:1,3:1:36:3:108:-8.85676,0,-2.39415	0/1:66:35,31:35:1251:31:1112:-80.2987,0,-92.8361	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.865	1/1:5:0,5:0:0:5:176:-16.1629,-1.50515,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:50:30,19:30:1063:19:680:-46.3028,0,-80.8714	0/1:62:27,35:27:960:35:1256:-94.3838,0,-68.0524	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.521	0/1:85:37,48:37:1320:48:1711:-128.445,0,-93.5144	0/1:30:20,10:20:716:10:356:-23.2619,0,-55.7364	0/0:35:35,0:35:1224:0:0:0,-10.536,-110.461	0/1:67:41,26:41:1463:26:927:-62.8118,0,-111.796	0/1:65:24,41:24:856:41:1465:-111.976,0,-57.7583	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.3821	0/1:12:3,9:3:108:9:315:-25.0371,0,-6.46281	0/1:20:10,10:10:360:10:360:-26.6773,0,-26.7237	0/1:15:6,9:6:216:9:315:-24.1346,0,-15.2751	0/1:123:63,60:63:2230:60:2130:-154.521,0,-163.937	0/1:47:31,16:31:1112:16:572:-37.5877,0,-86.2429	0/1:80:49,31:49:1741:31:1112:-76.1224,0,-132.89	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.282	0/1:26:16,10:16:572:10:360:-24.8711,0,-43.9866	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:28:8,20:8:284:20:720:-56.6154,0,-17.4736	0/1:111:54,57:54:1932:57:2017:-148.135,0,-140.674	0/1:43:25,18:25:900:18:648:-45.6168,0,-68.3767	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.342	0/1:28:16,12:16:576:12:423:-29.9211,0,-43.7461	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:27:26,1:26:936:1:36:0,-4.52953,-80.9612	0/1:48:27,21:27:955:21:739:-52.2956,0,-71.787	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/1:65:41,24:41:1455:24:856:-57.6453,0,-111.673	0/1:29:11,18:11:392:18:631:-48.1496,0,-26.8902	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.093	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33
chr09	870931	.	T	G	69016.2	PASS	AB=0.538968;ABP=41.0882;AC=131;AF=0.704301;AN=186;AO=3406;CIGAR=1X;DP=4745;DPB=4745;DPRA=10.3043;EPP=7399.05;EPPR=2897.58;GTI=1;LEN=1;MEANALT=1.03261;MQM=59.8432;MQMR=53.3068;NS=93;NUMALT=1;ODDS=1.35486;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121186;QR=47508;RO=1333;RPL=3406;RPP=7399.05;RPPR=2897.58;RPR=0;RUN=1;SAF=3406;SAP=7399.05;SAR=0;SRF=1333;SRP=2897.58;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:18,33:18:636:33:1175:-90.6408,0,-42.1103	1/1:24:0,24:0:0:24:852:-76.9998,-7.22472,0	1/1:78:0,78:0:0:78:2759:-248.549,-23.4803,0	1/1:97:3,94:3:108:94:3344:-291.108,-19.139,0	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.2349	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.262	1/1:98:0,98:0:0:98:3480:-313.411,-29.5009,0	0/1:62:35,26:35:1241:26:936:-65.9346,0,-92.4113	0/1:97:43,54:43:1526:54:1923:-144.14,0,-108.049	1/1:27:0,27:0:0:27:968:-87.3501,-8.12781,0	0/1:22:11,11:11:396:11:381:-27.9527,0,-29.3091	0/1:75:33,42:33:1180:42:1474:-110.374,0,-83.7246	0/1:46:26,20:26:909:20:712:-50.5593,0,-68.1034	1/1:33:0,33:0:0:33:1172:-105.786,-9.93399,0	0/1:48:25,23:25:892:23:789:-56.7446,0,-66.015	0/1:51:20,29:20:708:29:1036:-78.4625,0,-48.8336	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:71:40,31:40:1423:31:1101:-78.0252,0,-106.743	0/1:94:39,55:39:1404:55:1962:-148.555,0,-98.1114	0/1:48:36,12:36:1280:12:432:-24.5804,0,-100.897	0/1:59:30,29:30:1076:29:1044:-76.514,0,-78.9609	0/1:42:17,25:17:603:25:885:-67.3233,0,-41.8266	1/1:131:0,131:0:0:131:4670:-420.459,-39.4349,0	0/1:128:47,81:47:1684:81:2869:-219.91,0,-113.099	0/1:156:57,99:57:2039:99:3552:-272.892,0,-134.821	0/1:8:6,2:6:207:2:72:-4.42848,0,-16.5264	0/1:157:54,103:54:1932:103:3681:-284.23,0,-126.532	1/1:65:0,65:0:0:65:2305:-207.653,-19.567,0	0/1:58:31,27:31:1116:27:963:-69.5262,0,-82.8697	.:.:.:.:.:.:.:.	1/1:18:0,18:0:0:18:633:-57.2376,-5.41854,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99111	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:108:47,61:47:1683:61:2171:-163.127,0,-119.024	1/1:114:0,114:0:0:114:4055:-365.124,-34.3174,0	0/1:17:8,9:8:288:9:316:-23.6613,0,-21.1004	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:58:31,27:31:1112:27:972:-70.3382,0,-82.7006	0/1:39:18,21:18:644:21:745:-55.6045,0,-45.7471	0/1:88:37,51:37:1310:51:1828:-138.31,0,-91.4937	0/1:23:8,15:8:280:15:536:-41.6511,0,-18.5839	0/1:29:16,13:16:561:13:468:-33.7298,0,-42.0101	1/1:146:0,146:0:0:146:5199:-467.965,-43.9504,0	1/1:62:0,62:0:0:62:2224:-200.407,-18.6639,0	1/1:78:0,78:0:0:78:2755:-248.177,-23.4803,0	0/1:54:15,39:15:527:39:1396:-109.672,0,-31.4197	0/1:41:25,16:25:900:16:572:-39.4012,0,-68.7756	1/1:140:0,140:0:0:140:5003:-450.418,-42.1442,0	0/1:5:3,2:3:108:2:63:-4.478,0,-8.55573	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:36:0,36:0:0:36:1269:-114.51,-10.8371,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.85676	0/1:63:31,32:31:1112:32:1129:-82.9413,0,-81.2027	1/1:62:0,62:0:0:62:2199:-198.042,-18.6639,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1629	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:46:19,27:19:676:27:964:-73.2294,0,-47.2057	0/1:61:34,27:34:1208:27:955:-67.902,0,-90.3785	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:69:0,69:0:0:69:2470:-222.554,-20.7711,0	0/1:85:48,37:48:1720:37:1309:-92.522,0,-129.251	0/1:29:10,19:10:356:19:680:-52.7991,0,-23.5629	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	0/1:65:25,40:25:877:40:1436:-109.971,0,-59.1761	0/1:65:40,25:40:1419:25:872:-59.2255,0,-108.099	1/1:12:0,12:0:0:12:432:-39.1982,-3.61236,0	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.7891	0/1:22:10,12:10:356:12:428:-32.2254,0,-25.7149	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5211	0/1:123:58,65:58:2052:65:2292:-169.512,0,-147.164	0/1:48:16,32:16:572:32:1148:-89.1804,0,-37.2867	0/1:81:32,49:32:1144:49:1733:-131.869,0,-78.7023	1/1:41:0,41:0:0:41:1466:-132.236,-12.3422,0	1/1:53:0,53:0:0:53:1882:-169.551,-15.9546,0	0/1:24:9,15:9:320:15:536:-41.3501,0,-21.8786	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:29:18,8:18:644:8:288:-18.0808,0,-50.0216	0/1:112:57,55:57:2025:55:1932:-140.404,0,-147.362	0/1:41:17,24:17:612:24:864:-65.7403,0,-42.9866	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	0/1:27:12,15:12:423:15:532:-40.0853,0,-30.2221	1/1:79:0,79:0:0:79:2793:-251.61,-23.7814,0	1/1:26:0,26:0:0:26:916:-82.7565,-7.82678,0	0/1:47:21,26:21:752:26:915:-68.5056,0,-53.7637	1/1:53:0,53:0:0:53:1891:-170.468,-15.9546,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:65:24,41:24:855:41:1457:-111.857,0,-57.5524	0/1:30:18,12:18:640:12:432:-30.1903,0,-48.648	1/1:38:0,38:0:0:38:1347:-121.529,-11.4391,0	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0
chr09	904101	.	G	A	102810	PASS	AB=0.4999;ABP=3.01073;AC=132;AF=0.702128;AN=188;AO=5177;CIGAR=1X;DP=7689;DPB=7689;DPRA=83.5543;EPP=11244.7;EPPR=5457.75;GTI=1;LEN=1;MEANALT=1;MQM=52.0054;MQMR=59.5752;NS=94;NUMALT=1;ODDS=1.53885;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184454;QR=89343;RO=2512;RPL=5174;RPP=11218.7;RPPR=5431.72;RPR=3;RUN=1;SAF=5174;SAP=11218.7;SAR=3;SRF=2509;SRP=5431.72;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:30,37:30:1072:37:1332:-99.3792,0,-76.6058	1/1:63:0,63:0:0:63:2252:-201.831,-18.9649,0	1/1:169:0,169:0:0:169:6053:-541.527,-50.8741,0	1/1:140:0,140:0:0:140:4978:-446.773,-42.1442,0	0/1:76:41,35:41:1468:35:1252:-89.7518,0,-109.527	0/1:44:19,25:19:680:25:900:-67.689,0,-48.2838	1/1:67:0,67:0:0:67:2404:-216.037,-20.169,0	0/1:145:65,80:65:2306:80:2864:-213.355,0,-163.565	0/1:139:83,56:83:2950:56:2012:-138.004,0,-223.853	0/1:74:29,45:29:1032:45:1589:-120.348,0,-70.9173	0/1:40:24,16:24:851:16:572:-39.6825,0,-64.865	0/1:133:63,70:63:2233:70:2512:-185.288,0,-161.154	0/1:103:57,46:57:2044:46:1631:-115.515,0,-153.187	1/1:44:0,44:0:0:44:1576:-141.456,-13.2453,0	0/1:120:63,57:63:2234:57:2021:-145.547,0,-165.181	0/1:75:29,46:29:1040:46:1652:-125.45,0,-71.3158	1/1:26:0,26:0:0:26:932:-83.8137,-7.82678,0	1/1:33:0,33:0:0:33:1176:-105.899,-9.93399,0	1/1:29:0,29:0:0:29:1044:-93.8604,-8.72987,0	0/1:86:40,46:40:1436:46:1644:-122.073,0,-103.637	0/1:147:64,83:64:2262:83:2972:-222.408,0,-159.57	0/1:61:41,20:41:1458:20:716:-46.3385,0,-113.133	0/1:124:67,57:67:2400:57:1998:-142.201,0,-178.897	0/1:43:29,14:29:1044:14:504:-32.5922,0,-81.3305	1/1:128:0,128:0:0:128:4573:-410.176,-38.5318,0	0/1:155:73,82:73:2612:82:2906:-214.394,0,-188.664	0/1:220:100,120:100:3551:120:4285:-316.625,0,-253.529	0/1:58:28,30:28:1004:30:1064:-78.3263,0,-73.2161	0/1:166:78,88:78:2761:88:3113:-229.189,0,-198.734	1/1:70:0,70:0:0:70:2512:-225.211,-21.0721,0	0/1:64:37,27:37:1309:27:968:-67.7002,0,-98.8436	1/1:9:0,9:0:0:9:316:-28.695,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.27,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	1/1:14:0,14:0:0:14:496:-44.6863,-4.21442,0	1/1:12:0,12:0:0:12:428:-38.77,-3.61236,0	0/1:235:130,105:130:4649:105:3729:-264.593,0,-347.82	1/1:83:0,83:0:0:83:2961:-264.586,-24.9855,0	0/1:43:20,23:20:716:23:824:-61.1734,0,-51.8058	1/1:3:0,3:0:0:3:108:-10.0422,-0.90309,0	0/1:86:54,32:54:1912:32:1148:-77.1898,0,-146.438	0/1:21:9,12:9:324:12:428:-32.415,0,-23.1627	0/1:133:64,69:64:2255:69:2454:-180.165,0,-163.173	0/1:60:34,26:34:1208:26:928:-65.2762,0,-90.9539	0/1:78:39,39:39:1364:39:1398:-102.224,0,-99.5506	1/1:40:0,40:0:0:40:1417:-127.699,-12.0412,0	1/1:128:0,128:0:0:128:4545:-407.686,-38.5318,0	1/1:103:0,103:0:0:103:3691:-331.322,-31.0061,0	0/1:70:27,43:27:953:43:1525:-116.062,0,-65.0112	0/1:89:38,51:38:1368:51:1828:-137.693,0,-96.6168	1/1:99:0,99:0:0:99:3512:-315.931,-29.802,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:96:0,96:0:0:96:3417:-305.908,-28.8989,0	1/1:22:0,22:0:0:22:777:-70.1721,-6.62266,0	0/1:3:2,1:2:72:1:36:-2.68614,0,-5.93363	0/1:108:36,72:36:1281:72:2580:-198.263,0,-83.0345	1/1:47:0,47:0:0:47:1665:-149.416,-14.1484,0	1/1:5:0,5:0:0:5:180:-16.535,-1.50515,0	1/1:13:0,13:0:0:13:468:-42.3125,-3.91339,0	0/1:84:43,41:43:1514:41:1415:-101.886,0,-111.24	0/1:107:45,62:45:1586:62:2201:-165.06,0,-110.806	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:98:0,98:0:0:98:3455:-310.74,-29.5009,0	0/1:134:62,72:62:2224:72:2573:-190.099,0,-160.004	0/1:52:32,20:32:1144:20:697:-47.2086,0,-87.616	1/1:72:0,72:0:0:72:2574:-231.102,-21.6742,0	0/1:145:80,65:80:2826:65:2294:-162.613,0,-210.785	0/1:248:164,84:164:5822:84:2975:-192.586,0,-449.362	1/1:33:1,32:1:36:32:1133:-98.1433,-6.33572,0	0/1:62:25,37:25:888:37:1332:-100.867,0,-61.5752	0/1:52:28,24:28:1004:24:864:-62.2383,0,-75.0156	0/1:21:5,16:5:171:16:572:-45.2441,0,-9.40382	0/1:106:42,64:42:1480:64:2288:-172.61,0,-101.547	0/1:93:32,61:32:1125:61:2154:-164.574,0,-73.525	0/1:120:44,76:44:1565:76:2686:-204.319,0,-104.995	1/1:150:1,149:1:32:149:5297:-471.386,-41.9552,0	1/1:94:0,94:0:0:94:3341:-298.927,-28.2968,0	0/1:75:37,38:37:1319:38:1345:-97.9927,0,-96.4115	1/1:11:0,11:0:0:11:381:-34.5381,-3.31133,0	1/1:77:1,76:1:36:76:2728:-241.17,-19.581,0	0/1:81:47,34:47:1676:34:1224:-85.8059,0,-125.716	0/1:187:85,102:85:3033:102:3636:-270.171,0,-216.871	0/1:65:36,29:36:1288:29:1040:-74.0193,0,-96.6257	1/1:77:0,77:0:0:77:2733:-245.747,-23.1793,0	0/1:54:24,30:24:851:30:1076:-80.495,0,-60.6476	1/1:190:3,187:3:108:187:6668:-588.085,-47.1205,0	1/1:28:0,28:0:0:28:996:-89.5585,-8.42884,0	0/1:84:45,39:45:1612:39:1389:-99.7181,0,-120.063	1/1:71:0,71:0:0:71:2529:-226.963,-21.3731,0	1/1:24:0,24:0:0:24:860:-77.3804,-7.22472,0	0/1:76:39,37:39:1391:37:1315:-95.4183,0,-102.599	0/1:93:75,18:75:2659:18:640:-29.8217,0,-211.558	1/1:145:1,144:1:32:144:5153:-459.14,-40.45,0	1/1:162:0,162:0:0:162:5772:-518.104,-48.7669,0
chr09	1043134	.	GTAA	ATAA,ATAG	188065	PASS	AB=0.495359,0.501989;ABP=3.99793,3.1917;AC=132,56;AF=0.702128,0.297872;AN=188;AO=6266,2660;CIGAR=1X3M,1X2M1X;DP=8945;DPB=8946.75;DPRA=32.0502,1.13862;EPP=13609.5,5779.13;EPPR=0;GTI=1;LEN=1,4;MEANALT=1.82796,2.23729;MQM=59.9751,59.7391;MQMR=0;NS=94;NUMALT=2;ODDS=2.81674;PAIRED=0,0;PAIREDR=0;PAO=3.5,3.5;PQA=124,124;PQR=0;PRO=0;QA=223298,93781;QR=0;RO=0;RPL=6266,2660;RPP=13609.5,5779.13;RPPR=0;RPR=0,0;RUN=1,1;SAF=6266,2660;SAP=13609.5,5779.13;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:28:0,14,14:0:0:14,14:496,500:-81.5263,-41.122,-36.9076,-40.7598,0,-36.5454	1/1:176:0,175,0:0:0:175,0:6232,0:-560.668,-52.6803,0,-560.668,-52.6803,-560.668	1/1:151:0,151,0:0:0:151,0:5391,0:-485.322,-45.4555,0,-485.322,-45.4555,-485.322	1/1:216:0,216,0:0:0:216,0:7650,0:-688.542,-65.0225,0,-688.542,-65.0225,-688.542	1/2:57:0,24,33:0:0:24,33:852,1158:-164.014,-94.5913,-87.3666,-69.7757,0,-59.8417	1/2:34:0,16,18:0:0:16,18:556,645:-98.1587,-52.9626,-48.1461,-45.5486,0,-40.13	1/1:78:0,78,0:0:0:78,0:2761,0:-248.732,-23.4803,0,-248.732,-23.4803,-248.732	1/2:142:0,80,62:0:0:80,62:2856,2166:-409.316,-176.473,-152.39,-233.195,0,-214.532	1/2:39:0,20,19:0:0:20,19:712,660:-112.038,-54.0031,-47.9825,-58.3861,0,-52.6665	1/2:93:0,55,37:0:0:55,37:1980,1299:-267.382,-105.818,-89.2609,-161.666,0,-150.528	1/2:40:0,18,21:0:0:18,21:631,752:-112.668,-61.3252,-55.9066,-51.3378,0,-45.0162	1/2:72:0,36,36:0:0:36,36:1288,1284:-210.054,-105.025,-94.1875,-105.387,0,-94.5494	1/2:68:0,30,37:0:0:30,37:1063,1325:-194.659,-108.065,-99.0341,-86.6096,0,-75.4715	1/1:53:0,53,0:0:0:53,0:1892,0:-170.558,-15.9546,0,-170.558,-15.9546,-170.558	1/2:51:0,21,29:0:0:21,29:741,1029:-144.236,-83.8988,-77.5772,-60.3971,0,-51.6673	1/2:37:0,17,20:0:0:17,20:612,688:-106.162,-56.2184,-51.1009,-50.2959,0,-44.2753	1/1:51:0,51,0:0:0:51,0:1824,0:-164.441,-15.3525,0,-164.441,-15.3525,-164.441	1/1:36:0,36,0:0:0:36,0:1284,0:-115.863,-10.8371,0,-115.863,-10.8371,-115.863	1/1:30:0,30,0:0:0:30,0:1071,0:-96.7016,-9.0309,0,-96.7016,-9.0309,-96.7016	1/2:244:0,138,104:0:0:138,104:4951,3661:-701.627,-297.787,-256.245,-403.864,0,-372.557	1/2:115:0,56,59:0:0:56,59:1996,2091:-333.384,-170.685,-153.827,-163.055,0,-145.294	1/2:145:0,52,93:0:0:52,93:1856,3270:-417.833,-266.521,-250.868,-151.666,0,-123.67	1/1:50:0,50,0:0:0:50,0:1769,0:-159.491,-15.0515,0,-159.491,-15.0515,-159.491	1/2:154:0,88,65:0:0:88,65:3141,2295:-442.991,-186.92,-160.43,-256.104,0,-236.538	1/1:63:0,61,2:0:0:61,2:2171,71:-195.301,-18.3628,0,-189.516,-12.2228,-188.914	1/2:332:0,197,135:0:0:197,135:7055,4760:-963.215,-387.863,-328.56,-575.647,0,-535.008	1/2:200:0,98,102:0:0:98,102:3474,3573:-574.065,-291.045,-261.544,-283.372,0,-252.667	1/2:34:0,17,17:0:0:17,17:612,597:-98.8715,-48.931,-43.8134,-50.2959,0,-45.1784	1/2:283:0,148,135:0:0:148,135:5276,4784:-820.032,-389.963,-345.411,-430.305,0,-389.666	1/1:125:0,124,0:0:0:124,0:4427,0:-398.262,-37.3277,0,-398.262,-37.3277,-398.262	1/2:112:0,53,57:0:0:53,57:1891,1992:-316.091,-161.931,-145.977,-154.158,0,-136.999	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:36:0,34,2:0:0:34,2:1215,72:-109.297,-10.235,0,-103.422,-4.00036,-102.82	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:13:0,5,8:0:0:5,8:176,282:-37.6409,-23.3131,-21.8079,-14.6799,0,-12.2716	1/1:18:0,18,0:0:0:18,0:636,0:-57.568,-5.41854,0,-57.568,-5.41854,-57.568	1/2:155:0,74,81:0:0:74,81:2635,2880:-449.818,-235.053,-212.777,-215.121,0,-190.737	1/1:408:0,405,2:0:0:405,2:14449,72:-1299.8,-121.917,0,-1293.93,-116.029,-1293.32	1/2:42:0,18,24:0:0:18,24:648,845:-122.005,-69.1279,-63.7093,-53.2333,0,-46.0086	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:165:0,85,80:0:0:85,80:3044,2835:-479.529,-231.283,-205.695,-248.602,0,-224.52	1/2:32:0,10,22:0:0:10,22:356,772:-92.1953,-63.1786,-60.1683,-29.3709,0,-22.7483	1/2:148:0,67,81:0:0:67,81:2388,2867:-428.429,-233.786,-213.617,-194.997,0,-170.614	1/2:47:0,24,23:0:0:24,23:860,814:-136.796,-66.655,-59.4303,-70.4971,0,-63.5734	1/2:44:0,15,29:0:0:15,29:531,998:-124.653,-81.3966,-76.8812,-43.6065,0,-34.8766	1/1:84:0,84,0:0:0:84,0:3001,0:-270.322,-25.2865,0,-270.322,-25.2865,-270.322	1/1:232:0,231,0:0:0:231,0:8236,0:-740.936,-69.5379,0,-740.936,-69.5379,-740.936	1/1:203:0,203,0:0:0:203,0:7253,0:-652.823,-61.1091,0,-652.823,-61.1091,-652.823	1/2:131:0,43,88:0:0:43,88:1540,3128:-380.845,-255.256,-242.312,-125.946,0,-99.4558	1/2:153:0,79,73:0:0:79,73:2828,2590:-441.686,-211.069,-187.287,-230.672,0,-208.697	1/1:126:0,126,0:0:0:126,0:4478,0:-403.192,-37.9298,0,-403.192,-37.9298,-403.192	1/2:18:0,9,9:0:0:9,9:316,323:-52.4205,-26.7058,-23.9965,-26.0696,0,-23.3603	1/1:202:0,202,0:0:0:202,0:7217,0:-649.524,-60.8081,0,-649.524,-60.8081,-649.524	1/1:20:0,20,0:0:0:20,0:707,0:-63.9546,-6.0206,0,-63.9546,-6.0206,-63.9546	1/2:16:0,3,13:0:0:3,13:95,446:-44.1874,-36.5478,-35.6447,-7.96112,0,-4.04773	1/2:122:0,64,58:0:0:64,58:2269,2047:-351.805,-166.953,-147.687,-185.147,0,-167.687	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chr09	1047838	.	T	C	227681	PASS	AB=0.482581;ABP=25.4787;AC=131;AF=0.696809;AN=188;AO=8832;CIGAR=1X;DP=13263;DPB=13263;DPRA=142.602;EPP=66.459;EPPR=3.09327;GTI=3;LEN=1;MEANALT=1.08602;MQM=59.9864;MQMR=59.983;NS=94;NUMALT=1;ODDS=1.48978;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=312402;QR=156681;RO=4423;RPL=8828;RPP=19146.7;RPPR=9529.42;RPR=4;RUN=1;SAF=4158;SAP=68.4731;SAR=4674;SRF=2196;SRP=3.4821;SRR=2227;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:33,24:33:1176:24:860:-60.5631,0,-88.9891	1/1:184:0,184:0:0:184:6549:-589.496,-55.3895,0	1/1:178:0,178:0:0:178:6306:-567.531,-53.5833,0	1/1:221:0,220:0:0:220:7770:-698.978,-66.2266,0	0/1:112:53,59:53:1878:59:2095:-155.104,0,-135.582	0/1:90:38,52:38:1352:52:1826:-137.524,0,-94.8877	1/1:254:0,253:0:0:253:8885:-799.328,-76.1606,0	0/1:139:60,79:60:2152:79:2790:-209.498,0,-152.104	0/1:188:105,83:105:3729:83:2968:-210.76,0,-279.218	0/1:161:75,86:75:2671:86:3037:-225.095,0,-192.163	0/1:121:65,56:65:2312:56:1979:-141.96,0,-171.917	0/1:173:89,83:89:3160:83:2952:-213.778,0,-232.49	0/1:163:67,96:67:2392:96:3416:-258.588,0,-166.47	1/1:186:2,184:2:72:184:6543:-582.121,-49.1549,0	0/1:147:68,79:68:2416:79:2794:-207.45,0,-173.446	0/1:126:62,64:62:2196:64:2258:-165.553,0,-159.974	1/1:163:0,163:0:0:163:5820:-523.915,-49.0679,0	1/1:135:0,135:0:0:135:4812:-433.238,-40.6391,0	1/1:132:0,132:0:0:132:4683:-421.635,-39.736,0	0/1:299:144,155:144:5134:155:5452:-400.802,0,-372.184	0/1:263:142,121:142:5029:121:4272:-305.473,0,-373.587	0/1:83:64,19:64:2279:19:684:-36.9048,0,-180.386	1/1:137:2,135:2:72:135:4802:-425.501,-34.4044,0	0/1:198:115,83:115:4036:83:2964:-207.39,0,-303.824	1/1:100:0,100:0:0:100:3557:-320.339,-30.103,0	0/1:257:145,112:145:5138:112:3970:-280.129,0,-385.194	0/1:210:116,94:116:4089:94:3306:-234.541,0,-304.981	0/1:108:49,59:49:1756:59:2088:-155.679,0,-125.813	0/1:277:142,135:142:5021:135:4712:-340.848,0,-368.654	1/1:91:0,91:0:0:91:3214:-289.482,-27.3937,0	0/1:203:106,97:106:3757:97:3405:-245.554,0,-277.22	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:25:0,25:0:0:25:871:-78.7055,-7.52575,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:390:179,211:179:6349:211:7410:-549.552,0,-454.094	1/1:103:3,100:3:104:100:3535:-308.657,-21.3033,0	0/1:156:81,75:81:2892:75:2672:-193.766,0,-213.556	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:204:93,111:93:3327:111:3937:-293.114,0,-238.237	0/1:84:35,49:35:1228:49:1723:-130.065,0,-85.5346	0/1:179:83,96:83:2925:96:3393:-251.702,0,-209.599	0/1:188:95,93:95:3367:93:3273:-238.198,0,-246.652	0/1:136:72,64:72:2556:64:2241:-161.011,0,-189.351	1/1:134:0,134:0:0:134:4733:-426.131,-40.338,0	1/1:104:0,104:0:0:104:3707:-333.833,-31.3071,0	1/1:161:2,159:2:72:159:5578:-495.311,-41.6291,0	0/1:115:59,56:59:2059:56:1964:-142.414,0,-150.958	0/1:155:94,61:94:3338:61:2160:-148.008,0,-253.979	1/1:212:0,212:0:0:212:7500:-675.047,-63.8184,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:211:0,210:0:0:210:7492:-673.967,-63.2163,0	1/1:45:0,45:0:0:45:1580:-142.488,-13.5464,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:143:81,62:81:2872:62:2200:-155.219,0,-215.669	1/1:79:0,79:0:0:79:2786:-250.982,-23.7814,0	0/1:6:2,4:2:68:4:136:-10.7694,0,-4.65153	1/1:13:0,13:0:0:13:464:-42.0971,-3.91339,0	0/1:133:81,52:81:2858:52:1843:-126.113,0,-217.404	0/1:221:123,97:123:4342:97:3476:-246.465,0,-324.374	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:121:2,119:2:72:119:4191:-370.536,-29.5879,0	0/1:206:102,104:102:3582:104:3634:-265.255,0,-260.577	0/1:109:65,43:65:2269:43:1505:-102.869,0,-171.599	1/1:82:0,82:0:0:82:2884:-259.795,-24.6845,0	0/1:245:125,120:125:4424:120:4169:-301.641,0,-324.582	0/1:132:91,41:91:3217:41:1463:-92.2293,0,-250.015	1/1:95:0,95:0:0:95:3339:-300.729,-28.5979,0	0/1:147:76,71:76:2708:71:2532:-183.88,0,-199.713	0/1:176:89,87:89:3115:87:3074:-223.909,0,-227.595	0/1:27:15,12:15:532:12:432:-31.0934,0,-40.0853	0/1:104:57,47:57:2048:47:1684:-120.54,0,-153.284	0/1:80:32,48:32:1129:48:1688:-128.123,0,-77.8339	0/1:321:161,160:161:5651:160:5688:-415.41,0,-412.085	1/1:167:1,166:1:36:166:5881:-525.808,-46.6737,0	1/1:91:0,91:0:0:91:3239:-291.732,-27.3937,0	0/1:96:46,50:46:1640:50:1796:-133.023,0,-118.99	1/1:17:0,17:0:0:17:596:-53.9678,-5.11751,0	1/1:152:0,152:0:0:152:5353:-481.909,-45.7566,0	0/1:163:95,68:95:3392:68:2396:-166.831,0,-256.428	0/1:308:150,158:150:5279:158:5532:-405.294,0,-382.531	0/1:189:94,95:94:3327:95:3341:-244.016,0,-242.383	1/1:143:0,143:0:0:143:5090:-458.246,-43.0473,0	0/1:199:93,106:93:3311:106:3734:-276.357,0,-238.304	1/1:236:1,234:1:36:234:8259:-739.733,-67.5036,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:186:88,98:88:3144:98:3470:-256.522,0,-227.195	1/1:160:0,159:0:0:159:5672:-510.242,-47.8638,0	1/1:148:1,147:1:36:147:5172:-462.026,-40.9542,0	0/1:168:94,74:94:3302:74:2619:-185.386,0,-246.827	0/1:150:102,48:102:3609:48:1676:-105.969,0,-279.863	1/1:119:0,119:0:0:119:4209:-378.973,-35.8226,0	1/1:238:0,238:0:0:238:8457:-761.137,-71.6451,0
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chr09	1395432	.	T	C	125276	PASS	AB=0.584708;ABP=312.768;AC=132;AF=0.702128;AN=188;AO=6078;CIGAR=1X;DP=8154;DPB=8154;DPRA=43.828;EPP=13201.2;EPPR=4504.47;GTI=3;LEN=1;MEANALT=1.03226;MQM=59.9151;MQMR=59.9629;NS=94;NUMALT=1;ODDS=0.896685;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=217813;QR=74403;RO=2073;RPL=0;RPP=13201.2;RPPR=4504.47;RPR=6078;RUN=1;SAF=6078;SAP=13201.2;SAR=0;SRF=2073;SRP=4504.47;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:79:38,41:38:1368:41:1468:-108.635,0,-99.6391	1/1:77:0,77:0:0:77:2755:-248.191,-23.1793,0	1/1:104:0,104:0:0:104:3740:-336.799,-31.3071,0	1/1:215:0,215:0:0:215:7684:-691.593,-64.7215,0	0/1:82:24,58:24:864:58:2076:-162.381,0,-53.3969	0/1:44:23,21:23:828:21:748:-54.3998,0,-61.598	1/1:82:0,82:0:0:82:2940:-264.833,-24.6845,0	0/1:151:73,78:73:2616:78:2796:-206.42,0,-190.232	0/1:133:53,80:53:1904:80:2868:-218.32,0,-131.601	0/1:86:36,50:36:1284:50:1762:-132.962,0,-89.9748	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/1:59:17,42:17:612:42:1508:-118.254,0,-37.6523	0/1:62:35,27:35:1260:27:968:-68.7735,0,-95.0416	1/1:40:0,40:0:0:40:1426:-128.53,-12.0412,0	0/1:47:22,25:22:792:25:900:-67.1726,0,-57.4573	0/1:42:21,20:21:756:20:720:-52.4837,0,-55.7223	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:248:99,149:99:3556:149:5341:-405.797,0,-245.592	0/1:129:44,85:44:1584:85:3044:-235.328,0,-104.018	0/1:122:76,46:76:2728:46:1652:-112.243,0,-209.037	1/1:119:0,119:0:0:119:4253:-382.94,-35.8226,0	0/1:65:20,45:20:720:45:1615:-126.073,0,-44.9324	1/1:166:0,166:0:0:166:5905:-531.563,-49.971,0	0/1:288:146,142:146:5240:142:5088:-371.367,0,-385.038	0/1:193:57,136:57:2044:136:4880:-381.224,0,-126.132	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:217:79,138:79:2836:138:4953:-380.371,0,-190.155	1/1:93:0,93:0:0:93:3329:-299.821,-27.9958,0	0/1:68:29,39:29:1040:39:1400:-105.829,0,-73.4439	1/1:24:0,23:0:0:23:828:-74.1659,-6.92369,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:135:55,80:55:1976:80:2880:-218.797,0,-137.476	1/1:178:0,178:0:0:178:6373:-573.659,-53.5833,0	0/1:38:17,21:17:612:21:756:-56.9281,0,-43.9743	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:224:43,181:43:1548:181:6500:-517.651,0,-72.1823	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:202:66,136:66:2372:136:4874:-377.967,0,-152.919	0/1:30:15,15:15:540:15:539:-39.8153,0,-39.9056	0/1:63:23,40:23:828:40:1434:-109.652,0,-55.8792	1/1:172:1,171:1:36:171:6148:-549.816,-48.1789,0	1/1:130:0,130:0:0:130:4660:-419.557,-39.1339,0	1/1:177:1,176:1:36:176:6305:-563.935,-49.684,0	0/1:111:51,60:51:1836:60:2152:-160.533,0,-132.105	0/1:84:28,56:28:1004:56:2016:-156.426,0,-65.3893	1/1:88:0,88:0:0:88:3164:-284.976,-26.4906,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:166:0,165:0:0:165:5897:-530.478,-49.67,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:99:36,63:36:1296:63:2239:-171.966,0,-87.142	1/1:75:0,75:0:0:75:2677:-241.174,-22.5773,0	0/1:12:4,8:4:140:8:284:-22.291,0,-9.33222	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:92:32,60:32:1152:60:2135:-164.7,0,-76.2954	0/1:40:17,23:17:608:23:828:-62.8029,0,-43.0108	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:155:0,155:0:0:155:5568:-501.235,-46.6597,0	0/1:173:70,103:70:2512:103:3681:-279.413,0,-174.252	0/1:60:23,37:23:824:37:1319:-100.95,0,-56.4215	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:151:66,85:66:2353:85:3052:-229.205,0,-166.572	0/1:103:56,47:56:2004:47:1688:-121.2,0,-149.627	1/1:24:0,24:0:0:24:850:-76.8198,-7.22472,0	1/1:65:0,65:0:0:65:2320:-209.06,-19.567,0	0/1:36:19,17:19:676:17:612:-44.5764,0,-50.3309	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:120:57,63:57:2052:63:2259:-167.449,0,-148.827	0/1:119:51,68:51:1836:68:2430:-183.133,0,-129.697	0/1:138:59,79:59:2105:79:2836:-213.936,0,-148.175	1/1:136:0,136:0:0:136:4884:-439.637,-40.9401,0	1/1:67:0,67:0:0:67:2403:-216.509,-20.169,0	0/1:63:34,29:34:1224:29:1040:-74.9495,0,-91.5017	1/1:13:0,13:0:0:13:464:-42.0971,-3.91339,0	1/1:123:5,118:5:180:118:4223:-363.381,-20.4746,0	0/1:114:29,85:29:1029:85:3046:-240.051,0,-58.6037	0/1:296:127,169:127:4556:169:6068:-457.081,0,-321.1	0/1:58:28,30:28:1004:30:1079:-79.9631,0,-73.2161	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:44:21,23:21:752:23:828:-61.5984,0,-54.7609	1/1:114:1,113:1:36:113:4064:-362.318,-30.7191,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:48:31,17:31:1112:17:612:-40.964,0,-85.9419	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:52:32,20:32:1148:20:720:-49.4527,0,-87.9763	0/1:40:24,16:24:864:16:572:-39.7722,0,-66.041	1/1:147:0,147:0:0:147:5272:-474.615,-44.2514,0	1/1:91:0,91:0:0:91:3267:-294.25,-27.3937,0
chr09	1395436	.	G	A	32659.1	PASS	AB=0.420882;ABP=270.68;AC=56;AF=0.297872;AN=188;AO=2078;CIGAR=1X;DP=8063;DPB=8063;DPRA=1.28178;EPP=4515.33;EPPR=12981.9;GTI=3;LEN=1;MEANALT=1.0339;MQM=59.9629;MQMR=59.9276;NS=94;NUMALT=1;ODDS=1.75575;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74516;QR=212381;RO=5977;RPL=0;RPP=4515.33;RPPR=12981.9;RPR=2078;RUN=1;SAF=2078;SAP=4515.33;SAR=0;SRF=5977;SRP=12981.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:79:41,38:41:1464:38:1368:-99.6391,0,-108.275	0/0:79:79,0:79:2770:0:0:0,-23.7814,-249.541	0/0:103:103,0:103:3677:0:0:0,-31.0061,-331.132	0/0:208:208,0:208:7366:0:0:0,-62.6142,-662.987	0/1:79:55,24:55:1929:24:864:-54.3,0,-150.104	0/1:45:22,23:22:784:23:828:-61.297,0,-57.3372	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:148:73,74:73:2612:74:2656:-194.675,0,-190.713	0/1:128:76,52:76:2694:52:1860:-129.148,0,-204.17	0/1:87:50,37:50:1773:37:1328:-93.6326,0,-133.652	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	0/1:58:42,16:42:1508:16:576:-34.7148,0,-118.555	0/1:62:27,35:27:964:35:1260:-95.0416,0,-68.413	0/0:39:38,0:38:1353:0:0:0,-11.4391,-121.779	0/1:48:26,22:26:898:22:792:-57.1562,0,-66.6803	0/1:43:21,22:21:737:22:782:-57.7589,0,-53.7063	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:38:37,0:37:1305:0:0:0,-11.1381,-117.39	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:241:144,97:144:5111:97:3484:-241.222,0,-387.584	0/1:129:85,44:85:3025:44:1580:-103.658,0,-233.619	0/1:122:46,76:46:1648:76:2730:-209.216,0,-111.883	0/0:117:116,0:116:4112:0:0:0,-34.9195,-369.889	0/1:64:44,20:44:1546:20:720:-45.2334,0,-120.162	0/0:161:161,0:161:5643:0:0:0,-48.4658,-507.992	0/1:286:139,147:139:4965:147:5268:-388.158,0,-360.904	0/1:192:133,59:133:4734:59:2124:-133.63,0,-367.03	0/1:26:13,13:13:460:13:464:-34.2707,0,-33.9086	0/1:218:138,80:138:4907:80:2880:-193.811,0,-376.114	0/0:92:92,0:92:3268:0:0:0,-27.6948,-294.313	0/1:68:38,30:38:1349:30:1080:-77.0428,0,-101.238	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.7642	0/0:28:28,0:28:970:0:0:0,-8.42884,-87.6077	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:18:3,15:3:108:15:540:-43.518,0,-4.65663	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:132:77,55:77:2757:55:1980:-138.738,0,-208.634	0/0:179:178,0:178:6341:0:0:0,-53.5833,-570.493	0/1:39:21,18:21:752:18:648:-46.9117,0,-56.2661	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:222:179,43:179:6354:43:1544:-72.4244,0,-505.125	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:194:127,66:127:4532:66:2347:-153.021,0,-349.59	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	0/1:60:37,23:37:1324:23:824:-56.4215,0,-101.209	0/0:170:169,1:169:5987:1:36:0,-47.5768,-535.339	0/0:129:129,0:129:4571:0:0:0,-38.8329,-411.55	0/0:175:174,1:174:6138:1:36:0,-49.082,-548.916	0/1:110:58,52:58:2072:52:1868:-135.284,0,-153.637	0/1:85:57,28:57:2040:28:1008:-65.4488,0,-158.284	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.887	0/1:5:3,2:3:104:2:64:-4.57295,0,-8.19766	0/0:162:162,0:162:5804:0:0:0,-48.7669,-522.469	0/0:36:36,0:36:1272:0:0:0,-10.8371,-114.783	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:94:59,35:59:2101:35:1245:-84.0559,0,-161.06	0/0:75:75,0:75:2646:0:0:0,-22.5772,-238.385	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:90:58,32:58:2053:32:1141:-75.9054,0,-157.947	0/1:40:23,17:23:824:17:612:-43.3722,0,-62.4421	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:153:153,0:153:5446:0:0:0,-46.0576,-490.266	0/1:173:105,68:105:3699:68:2437:-167.505,0,-281.034	0/1:60:37,23:37:1328:23:816:-55.6994,0,-101.76	0/0:70:70,0:70:2455:0:0:0,-21.0721,-221.201	0/1:148:82,66:82:2897:66:2368:-168.826,0,-216.261	0/1:104:47,57:47:1673:57:2052:-153.644,0,-119.548	0/0:24:23,0:23:828:0:0:0,-6.92369,-74.5417	0/0:64:64,0:64:2246:0:0:0,-19.2659,-202.401	0/1:36:17,19:17:608:19:669:-49.6969,0,-44.2149	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:120:63,57:63:2249:57:2052:-148.827,0,-166.548	0/1:119:68,51:68:2391:51:1832:-129.337,0,-179.621	0/1:133:76,57:76:2705:57:2029:-142.843,0,-203.656	0/0:133:132,1:132:4686:1:36:0,-36.4387,-418.272	0/0:66:66,0:66:2345:0:0:0,-19.868,-211.307	0/1:62:27,35:27:972:35:1260:-95.0412,0,-69.134	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6202	0/0:121:121,0:121:4279:0:0:0,-36.4246,-385.237	0/1:113:83,30:83:2969:30:1077:-63.2266,0,-233.424	0/1:295:166,129:166:5936:129:4595:-324.909,0,-445.511	0/1:59:30,29:30:1041:29:1044:-76.514,0,-76.2335	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:45:23,22:23:824:22:784:-57.3376,0,-60.9366	0/0:109:108,1:108:3876:1:36:0,-29.214,-345.436	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:48:17,31:17:612:31:1116:-86.3023,0,-40.964	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:54:22,32:22:773:32:1152:-87.7345,0,-53.6114	0/1:40:16,24:16:568:24:860:-65.6805,0,-39.4107	0/0:144:144,0:144:5098:0:0:0,-43.3483,-458.966	0/0:88:87,0:87:3132:0:0:0,-26.1896,-281.745
chr09	1395452	.	A	G	118604	PASS	AB=0.572112;ABP=220.044;AC=132;AF=0.702128;AN=188;AO=5794;CIGAR=1X;DP=7859;DPB=7859;DPRA=42.2419;EPP=12034.8;EPPR=3355.76;GTI=2;LEN=1;MEANALT=1.05376;MQM=59.9239;MQMR=59.9626;NS=94;NUMALT=1;ODDS=3.25041;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203432;QR=73858;RO=2059;RPL=64;RPP=12034.8;RPPR=3355.76;RPR=5730;RUN=1;SAF=5794;SAP=12584.5;SAR=0;SRF=2059;SRP=4474.07;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:38,39:38:1368:39:1382:-101.498,0,-100.241	1/1:71:0,70:0:0:70:2451:-220.487,-21.0721,0	1/1:102:0,102:0:0:102:3594:-323.671,-30.7051,0	1/1:205:0,204:0:0:204:7180:-645.909,-61.4101,0	0/1:77:24,53:24:864:53:1863:-144.77,0,-54.902	0/1:45:23,22:23:824:22:757:-54.8999,0,-60.9362	1/1:79:0,79:0:0:79:2778:-250.263,-23.7814,0	0/1:150:76,74:76:2709:74:2572:-186.572,0,-198.898	0/1:130:53,77:53:1900:77:2663:-200.785,0,-132.144	0/1:85:37,48:37:1332:48:1692:-126.979,0,-94.5948	0/1:23:10,13:10:360:13:460:-34.8117,0,-25.8206	0/1:58:19,39:19:684:39:1383:-107.308,0,-44.4302	0/1:61:34,27:34:1224:27:972:-69.4351,0,-92.1042	1/1:40:0,40:0:0:40:1411:-127.269,-12.0412,0	0/1:47:22,25:22:792:25:891:-66.3604,0,-57.4573	0/1:41:22,19:22:784:19:671:-48.3736,0,-58.5417	1/1:20:0,20:0:0:20:711:-64.3156,-6.0206,0	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:240:95,145:95:3389:145:5079:-384.987,0,-232.977	0/1:126:44,82:44:1580:82:2852:-218.989,0,-104.561	0/1:119:75,44:75:2684:44:1551:-104.058,0,-205.982	1/1:114:0,114:0:0:114:3974:-357.84,-34.3174,0	0/1:59:18,41:18:644:41:1439:-112.044,0,-39.9	1/1:156:0,156:0:0:156:5450:-490.641,-46.9607,0	0/1:279:145,134:145:5200:134:4724:-341.337,0,-384.149	0/1:187:58,129:58:2080:129:4535:-351.592,0,-131.177	0/1:25:12,13:12:428:13:460:-34.2096,0,-31.3331	0/1:210:80,130:80:2876:130:4563:-347.623,0,-195.86	1/1:82:0,82:0:0:82:2845:-256.291,-24.6845,0	0/1:65:30,35:30:1076:35:1240:-92.3373,0,-77.5855	1/1:23:0,23:0:0:23:796:-71.9434,-6.92369,0	1/1:29:0,29:0:0:29:1012:-91.3913,-8.72987,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:133:55,78:55:1976:78:2759:-208.515,0,-138.078	1/1:165:0,165:0:0:165:5812:-523.203,-49.67,0	0/1:36:17,19:17:608:19:680:-50.6921,0,-44.2149	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:214:43,171:43:1548:171:5981:-473.989,0,-75.1926	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:187:62,125:62:2232:125:4419:-341.593,0,-144.827	0/1:31:15,16:15:540:16:568:-42.1199,0,-39.6046	0/1:61:22,39:22:788:39:1367:-104.403,0,-52.882	1/1:167:1,165:1:36:165:5762:-515.108,-46.7325,0	1/1:128:0,128:0:0:128:4483:-403.646,-38.5318,0	1/1:167:1,166:1:36:166:5793:-517.899,-46.6737,0	0/1:111:52,59:52:1868:59:2049:-151.264,0,-134.983	0/1:85:28,57:28:1008:57:1985:-153.335,0,-65.4488	1/1:85:0,85:0:0:85:2996:-269.855,-25.5876,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:157:0,157:0:0:157:5549:-499.538,-47.2617,0	1/1:34:0,34:0:0:34:1175:-106.053,-10.235,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:90:34,56:34:1216:56:1958:-149.402,0,-82.6539	1/1:74:0,74:0:0:74:2584:-232.81,-22.2762,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:85:32,53:32:1148:53:1837:-140.021,0,-78.0423	0/1:38:17,21:17:612:21:747:-56.1158,0,-43.9743	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:151:0,151:0:0:151:5330:-479.838,-45.4555,0	0/1:168:71,97:71:2552:97:3369:-252.859,0,-179.355	0/1:56:23,33:23:820:33:1158:-87.6674,0,-57.2648	1/1:70:0,70:0:0:70:2459:-221.56,-21.0721,0	0/1:141:65,76:65:2332:76:2670:-197.873,0,-167.694	0/1:100:56,44:56:2012:44:1550:-109.688,0,-151.25	1/1:24:0,24:0:0:24:847:-76.5487,-7.22472,0	1/1:63:0,63:0:0:63:2186:-197.007,-18.9649,0	0/1:35:19,16:19:680:16:559:-40.1016,0,-50.9931	0/1:13:5,8:5:180:8:279:-21.5341,0,-12.6387	0/1:118:57,61:57:2033:61:2117:-155.277,0,-147.718	0/1:116:50,66:50:1796:66:2332:-175.222,0,-127.002	0/1:126:57,69:57:2031:69:2416:-179.766,0,-145.132	1/1:129:0,129:0:0:129:4529:-407.768,-38.8329,0	1/1:64:0,64:0:0:64:2247:-202.475,-19.2659,0	0/1:62:35,27:35:1260:27:964:-68.413,0,-95.0412	1/1:12:0,12:0:0:12:420:-38.1339,-3.61236,0	1/1:119:0,119:0:0:119:4177:-376.046,-35.8226,0	0/1:112:29,83:29:1032:83:2864:-224.283,0,-59.4781	0/1:288:127,161:127:4564:161:5645:-421.474,0,-324.227	0/1:56:28,28:28:1008:28:979:-71.564,0,-74.1787	1/1:47:0,47:0:0:47:1663:-149.957,-14.1484,0	0/1:44:21,21:21:752:21:751:-54.9131,0,-55.0033	1/1:111:1,110:1:36:110:3903:-347.863,-29.8161,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:47:30,17:30:1080:17:608:-40.9036,0,-83.3648	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:53:32,21:32:1152:21:739:-50.8758,0,-88.0356	0/1:38:24,14:24:864:14:495:-33.4439,0,-66.643	1/1:140:0,139:0:0:139:4881:-439.132,-41.8432,0	1/1:90:0,90:0:0:90:3201:-288.313,-27.0927,0
chr09	1421442	.	A	C	54951.2	PASS	AB=0.505276;ABP=4.56848;AC=57;AF=0.303191;AN=188;AO=3258;CIGAR=1X;DP=10336;DPB=10336;DPRA=1.07383;EPP=7077.67;EPPR=15361.8;GTI=0;LEN=1;MEANALT=1.08621;MQM=59.4672;MQMR=59.8916;NS=94;NUMALT=1;ODDS=3.87888;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116172;QR=253076;RO=7073;RPL=3258;RPP=7077.67;RPPR=15361.8;RPR=0;RUN=1;SAF=0;SAP=7077.67;SAR=3258;SRF=0;SRP=15361.8;SRR=7073;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:33,52:33:1173:52:1861:-142.122,0,-80.288	0/0:93:93,0:93:3314:0:0:0,-27.9958,-298.428	0/0:189:189,0:189:6743:0:0:0,-56.8947,-606.749	0/0:286:286,0:286:10253:0:0:0,-86.0946,-922.359	0/1:63:32,31:32:1133:31:1104:-80.6951,0,-83.3118	0/1:61:35,26:35:1256:26:932:-65.7951,0,-94.9825	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.957	0/1:149:76,73:76:2719:73:2594:-188.749,0,-200.074	0/1:94:60,34:60:2156:34:1201:-80.0848,0,-166.009	0/1:120:68,52:68:2436:52:1868:-132.256,0,-183.349	0/1:48:27,21:27:972:21:752:-53.5568,0,-73.3485	0/1:115:62,53:62:2220:53:1889:-135.643,0,-165.446	0/1:122:56,65:56:2001:65:2332:-173.13,0,-143.577	0/1:40:20,20:20:720:20:716:-52.6922,0,-53.0852	0/1:110:61,49:61:2180:49:1752:-124.81,0,-163.353	0/1:66:38,28:38:1356:28:993:-69.8039,0,-102.473	0/1:28:11,17:11:392:17:608:-46.6232,0,-27.1912	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:358:198,159:198:7093:159:5671:-401.466,0,-530.581	0/1:197:78,119:78:2779:119:4209:-319.521,0,-191.048	0/1:147:45,102:45:1620:102:3638:-283.349,0,-101.043	0/0:166:166,0:166:5924:0:0:0,-49.971,-533.111	0/1:73:33,40:33:1165:40:1436:-107.552,0,-83.1798	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.498	0/1:318:176,142:176:6324:142:5057:-359.407,0,-473.521	0/1:406:190,216:190:6798:216:7722:-572.716,0,-489.67	0/1:54:28,26:28:1008:26:926:-67.3503,0,-74.7807	0/1:374:200,174:200:7157:174:6186:-443.913,0,-531.551	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.646	0/1:129:50,79:50:1796:79:2796:-212.93,0,-123.089	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/1:236:124,112:124:4444:112:4005:-289.573,0,-329.085	0/0:119:119,0:119:4261:0:0:0,-35.8226,-383.644	0/1:54:25,29:25:900:29:1040:-77.6333,0,-65.0654	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:128:55,73:55:1976:73:2620:-197.484,0,-139.579	0/1:44:19,25:19:669:25:896:-67.7044,0,-47.2886	0/1:194:115,79:115:4120:79:2813:-194.998,0,-312.342	0/1:79:40,38:40:1440:38:1340:-97.0565,0,-106.058	0/1:80:40,40:40:1432:40:1421:-104.07,0,-104.047	0/0:138:138,0:138:4907:0:0:0,-41.5421,-441.325	0/0:159:159,0:159:5701:0:0:0,-47.8638,-513.205	0/0:155:155,0:155:5552:0:0:0,-46.6596,-499.804	0/1:82:40,42:40:1413:42:1463:-107.246,0,-102.511	0/1:120:62,58:62:2197:58:2065:-149.663,0,-161.857	0/0:150:150,0:150:5366:0:0:0,-45.1545,-482.921	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	0/0:173:173,0:173:6193:0:0:0,-52.0782,-557.135	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:5:1,4:1:36:4:144:-11.7944,0,-2.09312	0/1:146:68,78:68:2432:78:2769:-205.479,0,-175.182	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.386	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:66:27,39:27:942:39:1404:-106.511,0,-65.2218	0/1:104:53,51:53:1908:51:1813:-132.109,0,-140.69	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:156:156,0:156:5574:0:0:0,-46.9607,-501.752	0/1:166:87,79:87:3098:79:2840:-205.737,0,-229.074	0/1:35:24,11:24:834:11:396:-25.4467,0,-64.837	0/0:77:77,0:77:2749:0:0:0,-23.1793,-247.651	0/1:148:79,69:79:2817:69:2480:-178.872,0,-209.211	0/1:176:66,110:66:2357:110:3909:-298.819,0,-159.406	0/0:27:27,0:27:968:0:0:0,-8.12781,-86.8686	0/0:106:104,2:104:3698:2:72:0,-25.0896,-326.201	0/1:53:24,29:24:864:29:1040:-77.9598,0,-62.128	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:155:57,98:57:2029:98:3471:-265.719,0,-136.221	0/1:118:53,65:53:1889:65:2325:-173.987,0,-134.765	0/1:72:44,27:44:1561:27:972:-66.065,0,-119.047	0/0:258:258,0:258:9245:0:0:0,-77.6657,-832.007	0/0:115:115,0:115:4121:0:0:0,-34.6184,-371.072	0/1:99:53,46:53:1904:46:1652:-119.145,0,-141.836	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:128:128,0:128:4600:0:0:0,-38.5318,-414.162	0/1:166:78,88:78:2762:88:3135:-232.389,0,-198.849	0/1:272:147,125:147:5276:125:4469:-320.457,0,-393.094	0/1:68:35,33:35:1260:33:1184:-86.3841,0,-93.235	0/0:93:93,0:93:3327:0:0:0,-27.9958,-299.634	0/1:71:30,41:30:1080:41:1449:-109.303,0,-76.1401	0/0:176:176,0:176:6320:0:0:0,-52.9813,-568.889	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:94:48,45:48:1713:45:1597:-115.663,0,-126.098	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.026	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.942	0/1:67:31,36:31:1116:36:1296:-96.7536,0,-80.5827	0/1:129:45,84:45:1620:84:2989:-229.773,0,-107.257	0/0:225:225,0:225:8084:0:0:0,-67.7317,-727.464	0/0:162:162,0:162:5800:0:0:0,-48.7669,-522.111
chr09	1422413	.	T	C	67876.6	PASS	AB=0.546059;ABP=147.232;AC=56;AF=0.301075;AN=186;AO=4286;CIGAR=1X;DP=11709;DPB=11709;DPRA=1.55927;EPP=8931.69;EPPR=15495.9;GTI=7;LEN=1;MEANALT=1.06452;MQM=39.1785;MQMR=58.063;NS=93;NUMALT=1;ODDS=0.163141;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153020;QR=265384;RO=7416;RPL=44;RPP=8931.69;RPPR=15495.9;RPR=4242;RUN=1;SAF=4286;SAP=9309.94;SAR=0;SRF=7416;SRP=16106.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:25,21:25:892:21:756:-54.1492,0,-66.5022	0/0:253:252,1:252:9025:1:27:0,-73.4633,-805.83	0/0:175:175,0:175:6284:0:0:0,-52.6802,-564.01	0/0:223:223,0:223:7992:0:0:0,-67.1297,-719.193	0/1:60:25,35:25:896:35:1252:-87.1624,0,-62.8269	0/1:54:20,34:20:720:34:1220:-92.841,0,-48.6337	0/0:143:141,2:141:5049:2:72:0,-36.6896,-448.117	0/1:249:98,151:98:3492:151:5391:-406.933,0,-238.162	0/1:117:57,60:57:2048:60:2135:-155.302,0,-148.662	0/1:176:79,97:79:2840:97:3451:-238.341,0,-202.803	0/1:116:43,73:43:1536:73:2624:-185.574,0,-103.57	0/1:80:36,44:36:1292:44:1578:-116.57,0,-92.025	0/1:114:56,58:56:2004:58:2084:-152.545,0,-146.019	0/1:124:54,70:54:1936:70:2508:-173.377,0,-137.189	0/1:91:43,47:43:1548:47:1683:-114.238,0,-112.185	0/1:74:34,40:34:1224:40:1432:-98.0406,0,-88.1802	0/1:110:51,59:51:1824:59:2120:-156.507,0,-130.742	0/0:65:64,1:64:2292:1:36:0,-15.9882,-202.363	0/0:58:57,0:57:2044:0:0:0,-17.1587,-183.474	0/1:314:161,153:161:5769:153:5469:-362.527,0,-424.444	0/1:208:100,108:100:3580:108:3828:-259.399,0,-259.703	0/1:137:66,71:66:2359:71:2524:-166.525,0,-171.118	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:127:82,45:82:2920:45:1606:-95.7987,0,-224.789	0/0:109:108,0:108:3855:0:0:0,-32.5112,-346.737	0/1:460:214,246:214:7642:246:8779:-585.094,0,-549.109	0/1:357:166,191:166:5937:191:6821:-463.882,0,-425.81	0/1:45:17,28:17:608:28:1000:-70.3074,0,-41.4697	0/1:300:134,166:134:4793:166:5927:-397.106,0,-341.075	0/0:196:196,0:196:6993:0:0:0,-59.0019,-628.694	0/1:232:99,133:99:3529:133:4768:-328.017,0,-247.803	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4617	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0388	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.1506	0/1:277:131,146:131:4700:146:5187:-344.476,0,-339.665	0/0:157:157,0:157:5613:0:0:0,-47.2617,-504.934	0/1:94:42,52:42:1508:52:1868:-138.719,0,-106.873	.:.:.:.:.:.:.:.	0/1:235:88,147:88:3144:147:5254:-368.274,0,-212.391	0/1:45:21,24:21:756:24:860:-58.1376,0,-54.785	0/1:182:99,83:99:3552:83:2933:-187.875,0,-264.386	0/1:111:61,49:61:2187:49:1756:-113.351,0,-163.504	0/1:89:36,52:36:1292:52:1860:-129.618,0,-89.7579	0/0:142:142,0:142:5062:0:0:0,-42.7463,-455.582	0/0:164:163,1:163:5852:1:36:0,-46.1228,-520.299	0/0:197:196,1:196:6985:1:36:0,-55.8484,-625.12	0/1:169:81,88:81:2908:88:3144:-212.421,0,-210.742	0/1:191:65,126:65:2332:126:4501:-319.014,0,-152.524	0/0:151:151,0:151:5403:0:0:0,-45.4555,-486.225	0/1:5:1,4:1:36:4:144:-10.8756,0,-2.09312	0/0:203:203,0:203:7268:0:0:0,-61.1091,-651.416	0/0:47:45,2:45:1611:2:72:0,-7.45849,-138.589	0/1:6:2,4:2:68:4:119:-9.14006,0,-4.62957	0/1:147:76,71:76:2713:71:2544:-167.972,0,-199.447	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.196	1/1:3:0,3:0:0:3:108:-9.23727,-0.90309,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:67:33,34:33:1188:34:1211:-81.7344,0,-86.954	0/1:166:83,83:83:2984:83:2972:-194.143,0,-218.749	0/1:5:1,4:1:36:4:144:-10.8756,0,-2.09312	0/0:169:169,0:169:6068:0:0:0,-50.8741,-546.087	0/1:296:144,152:144:5130:152:5422:-365.794,0,-372.426	0/1:121:47,74:47:1692:74:2648:-185.806,0,-116.142	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.542	0/1:281:138,142:138:4940:142:5080:-340.707,0,-360.178	0/1:71:26,45:26:924:45:1604:-113.058,0,-62.0347	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.445	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.152	0/1:106:45,61:45:1612:61:2184:-147.929,0,-113.425	0/1:42:12,30:12:428:30:1063:-75.6499,0,-26.2155	0/1:126:66,60:66:2364:60:2143:-154.188,0,-174.068	0/1:77:38,39:38:1351:39:1396:-102.083,0,-97.5239	0/1:256:119,137:119:4253:137:4896:-331.366,0,-305.845	0/0:210:210,0:210:7528:0:0:0,-63.2163,-677.406	0/0:104:104,0:104:3697:0:0:0,-31.3071,-330.53	0/1:161:44,117:44:1572:117:4196:-326.954,0,-92.7783	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2589	0/0:142:142,0:142:5091:0:0:0,-42.7463,-458.078	0/1:63:27,36:27:968:36:1275:-94.9771,0,-68.2885	0/1:269:122,147:122:4353:147:5219:-356.338,0,-310.255	0/1:112:51,61:51:1802:61:2196:-149.466,0,-128.734	0/0:84:83,0:83:2956:0:0:0,-24.9855,-265.868	0/1:119:51,68:51:1815:68:2410:-165.926,0,-127.796	0/0:167:166,1:166:5946:1:36:0,-46.9259,-531.65	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.236	0/1:85:36,49:36:1288:49:1751:-131.33,0,-90.4574	0/0:88:88,0:88:3151:0:0:0,-26.4906,-282.714	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.821	0/1:156:79,77:79:2828:77:2743:-182.459,0,-207.727	0/1:106:24,82:24:864:82:2918:-211.873,0,-46.1375	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.697
chr09	1422428	.	G	C	65930	PASS	AB=0.542911;ABP=129.364;AC=56;AF=0.301075;AN=186;AO=4298;CIGAR=1X;DP=11834;DPB=11834;DPRA=1.55026;EPP=9336;EPPR=16358.5;GTI=7;LEN=1;MEANALT=1.03333;MQM=39.1345;MQMR=58.0361;NS=93;NUMALT=1;ODDS=0.145569;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153587;QR=269651;RO=7532;RPL=4298;RPP=9336;RPPR=16358.5;RPR=0;RUN=1;SAF=4298;SAP=9336;SAR=0;SRF=7532;SRP=16358.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:24,21:24:845:21:756:-54.4502,0,-62.6124	0/0:255:254,1:254:9075:1:32:0,-73.5712,-809.812	0/0:171:171,0:171:6132:0:0:0,-51.4761,-550.34	0/0:229:229,0:229:8203:0:0:0,-68.9359,-738.173	0/1:59:25,34:25:900:34:1216:-84.2545,0,-63.4885	0/1:55:21,34:21:756:34:1216:-92.1902,0,-51.5536	0/0:144:142,2:142:5092:2:72:0,-36.9906,-451.91	0/1:256:103,152:103:3665:152:5402:-405.742,0,-250.735	0/1:121:60,61:60:2107:61:2192:-158.88,0,-152.688	0/1:175:78,97:78:2792:97:3472:-239.63,0,-198.797	0/1:124:48,76:48:1724:76:2681:-188.38,0,-118.074	0/1:80:36,44:36:1296:44:1584:-116.963,0,-92.3852	0/1:118:59,59:59:2097:59:2111:-153.769,0,-153.132	0/1:126:56,70:56:2007:70:2504:-172.635,0,-142.973	0/1:92:44,48:44:1580:48:1728:-117.602,0,-114.797	0/1:76:35,41:35:1240:41:1457:-99.5554,0,-89.0074	0/1:113:53,60:53:1870:60:2148:-158.144,0,-133.976	0/0:69:68,1:68:2448:1:36:0,-17.1923,-216.351	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.513	0/1:317:165,152:165:5898:152:5427:-357.365,0,-435.149	0/1:204:97,107:97:3473:107:3814:-258.745,0,-251.334	0/1:139:68,71:68:2444:71:2539:-167.036,0,-178.203	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.51	0/1:125:81,44:81:2888:44:1584:-94.0464,0,-222.512	0/0:112:111,0:111:3969:0:0:0,-33.4143,-356.929	0/1:459:216,243:216:7728:243:8712:-579.08,0,-557.214	0/1:359:168,191:168:6031:191:6833:-464.062,0,-433.627	0/1:44:17,27:17:604:27:972:-67.7259,0,-41.4094	0/1:299:133,165:133:4780:165:5909:-395.806,0,-340.149	0/0:198:198,0:198:7120:0:0:0,-59.6039,-640.06	0/1:238:105,133:105:3745:133:4768:-325.861,0,-264.8	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9012	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0388	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.0186	0/1:276:130,146:130:4672:146:5168:-342.11,0,-337.448	0/0:159:159,0:159:5691:0:0:0,-47.8638,-511.981	0/1:94:41,53:41:1472:53:1900:-141.59,0,-104.342	.:.:.:.:.:.:.:.	0/1:237:87,150:87:3120:150:5359:-375.848,0,-209.629	0/1:45:22,23:22:792:23:828:-55.1383,0,-58.0234	0/1:192:106,86:106:3796:86:3051:-194.623,0,-283.936	0/1:110:61,49:61:2196:49:1746:-112.752,0,-164.649	0/1:91:37,54:37:1319:54:1915:-133.954,0,-91.5816	0/0:144:144,0:144:5153:0:0:0,-43.3483,-463.804	0/0:167:167,0:167:5976:0:0:0,-50.272,-534.272	0/0:195:194,1:194:6972:1:36:0,-55.2464,-623.789	0/1:172:84,88:84:3016:88:3123:-210.551,0,-219.554	0/1:196:66,130:66:2364:130:4659:-330.871,0,-153.897	0/0:152:152,0:152:5447:0:0:0,-45.7566,-490.182	0/1:5:1,4:1:36:4:144:-10.8756,0,-2.09312	0/0:209:209,0:209:7494:0:0:0,-62.9153,-671.576	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.544	0/1:6:2,4:2:72:4:140:-10.8502,0,-4.99755	0/1:142:71,71:71:2552:71:2539:-169.187,0,-186.47	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.794	1/1:3:0,3:0:0:3:108:-9.23727,-0.90309,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:68:34,34:34:1220:34:1193:-80.3825,0,-89.5312	0/1:164:81,83:81:2899:83:2984:-194.965,0,-211.705	0/1:5:1,4:1:36:4:144:-10.8756,0,-2.09312	0/0:174:174,0:174:6248:0:0:0,-52.3792,-562.268	0/1:299:142,157:142:5087:157:5614:-380.466,0,-367.657	0/1:123:49,74:49:1736:74:2643:-184.824,0,-119.495	0/0:70:70,0:70:2511:0:0:0,-21.0721,-226.212	0/1:279:139,140:139:4985:140:4994:-334.035,0,-364.702	0/1:71:26,45:26:917:45:1588:-111.734,0,-61.4691	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.926	0/0:70:70,0:70:2486:0:0:0,-21.0721,-223.253	0/1:108:48,60:48:1724:60:2148:-144.376,0,-122.898	0/1:42:12,30:12:417:30:1060:-75.882,0,-25.217	0/1:129:68,61:68:2436:61:2192:-157.65,0,-179.48	0/1:76:37,39:37:1313:39:1400:-102.734,0,-95.1195	0/1:261:122,139:122:4344:139:4969:-336.184,0,-312.531	0/0:215:214,0:214:7659:0:0:0,-64.4204,-688.85	0/0:105:105,0:105:3764:0:0:0,-31.6081,-336.534	0/1:161:45,116:45:1601:116:4164:-324.065,0,-95.3574	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.057	0/0:147:147,0:147:5284:0:0:0,-44.2514,-475.449	0/1:64:28,36:28:993:36:1288:-95.8216,0,-70.2215	0/1:271:123,148:123:4403:148:5303:-361.824,0,-314.129	0/1:119:55,64:55:1972:64:2284:-155.197,0,-141.922	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.837	0/1:120:52,68:52:1839:68:2427:-166.723,0,-129.653	0/0:169:168,1:168:6021:1:36:0,-47.5279,-538.396	0/0:44:44,0:44:1576:0:0:0,-13.2453,-141.883	0/1:88:40,48:40:1400:48:1728:-128.333,0,-99.618	0/0:90:90,0:90:3227:0:0:0,-27.0927,-289.528	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.07	0/1:156:82,74:82:2948:74:2639:-173.404,0,-218.485	0/1:106:25,81:25:900:81:2908:-210.874,0,-49.376	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/0:99:99,0:99:3536:0:0:0,-29.802,-318.364
chr09	1446118	.	C	T	74445.4	PASS	AB=0.521318;ABP=15.2311;AC=130;AF=0.698925;AN=186;AO=3590;CIGAR=1X;DP=5084;DPB=5084;DPRA=13.8043;EPP=7617.26;EPPR=3190.94;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9123;MQMR=59.998;NS=93;NUMALT=1;ODDS=4.10567;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128703;QR=53342;RO=1492;RPL=21;RPP=7617.26;RPPR=3190.94;RPR=3569;RUN=1;SAF=3590;SAP=7798.6;SAR=0;SRF=1492;SRP=3242.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:17,12:17:608:12:432:-30.4913,0,-46.3222	1/1:49:2,47:2:72:47:1688:-145.37,-7.91375,0	1/1:69:0,69:0:0:69:2472:-222.733,-20.7711,0	1/1:103:2,101:2:72:101:3620:-319.168,-24.1694,0	0/1:51:22,29:22:792:29:1040:-78.5618,0,-56.2531	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2796	1/1:82:0,82:0:0:82:2944:-265.164,-24.6845,0	0/1:82:38,44:38:1356:44:1576:-117.447,0,-97.656	0/1:59:26,33:26:928:33:1184:-89.1075,0,-66.0775	0/1:66:31,35:31:1108:35:1252:-93.1169,0,-80.163	0/1:46:19,27:19:684:27:968:-73.59,0,-48.0429	0/1:51:30,21:30:1068:21:756:-53.0147,0,-81.0795	0/1:33:13,20:13:468:20:720:-55.1948,0,-32.5257	0/1:37:18,19:18:640:19:684:-50.7522,0,-46.7912	0/1:36:22,14:22:784:14:500:-34.4991,0,-60.0468	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:32:16,16:16:576:16:576:-42.542,0,-42.5416	1/1:26:0,26:0:0:26:936:-84.5513,-7.82678,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:145:51,94:51:1820:94:3372:-260.032,0,-120.432	0/1:91:40,51:40:1428:51:1832:-137.762,0,-101.424	0/1:73:54,19:54:1936:19:669:-38.5588,0,-152.541	1/1:46:1,45:1:36:45:1601:-140.58,-10.2491,0	0/1:77:35,42:35:1260:42:1500:-112.115,0,-90.5262	1/1:50:0,50:0:0:50:1796:-161.914,-15.0515,0	0/1:157:55,102:55:1964:102:3650:-281.442,0,-129.774	0/1:105:32,73:32:1148:73:2624:-204.754,0,-72.0217	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	0/1:108:40,68:40:1428:68:2432:-186.624,0,-96.3063	1/1:67:0,67:0:0:67:2399:-216.159,-20.169,0	0/1:59:21,38:21:756:38:1364:-105.3,0,-50.6065	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:138:59,79:59:2112:79:2844:-214.655,0,-148.806	1/1:190:0,190:0:0:190:6808:-612.601,-57.1957,0	0/1:58:30,28:30:1076:28:1000:-72.8556,0,-79.6931	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:61:37,24:37:1332:24:864:-59.7197,0,-101.82	0/1:27:11,16:11:392:16:576:-44.0472,0,-27.4922	0/1:70:46,24:46:1644:24:856:-56.289,0,-127.177	0/1:54:25,29:25:896:29:1044:-78.0192,0,-64.7047	0/1:41:18,23:18:639:23:820:-61.7803,0,-45.496	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:144:0,144:0:0:144:5157:-464.259,-43.3483,0	0/1:35:18,17:18:640:17:612:-44.8774,0,-47.3933	0/1:55:30,25:30:1068:25:871:-62.1473,0,-79.8754	1/1:110:0,110:0:0:110:3951:-355.776,-33.1133,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:60:24,36:24:864:36:1292:-98.522,0,-60.0208	1/1:35:2,33:2:72:33:1188:-100.262,-3.69933,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:45:26,19:26:924:19:684:-48.344,0,-69.9313	0/1:80:47,32:47:1684:32:1152:-79.8489,0,-127.706	0/1:6:3,2:3:108:2:68:-4.59938,0,-8.21019	1/1:96:0,96:0:0:96:3439:-309.721,-28.8989,0	0/1:38:17,21:17:608:21:756:-56.9281,0,-43.6129	0/1:37:22,15:22:792:15:540:-37.7984,0,-60.4676	1/1:32:1,31:1:36:31:1114:-96.9596,-6.03469,0	0/1:80:54,26:54:1928:26:936:-60.4594,0,-149.714	0/1:65:45,20:45:1600:20:720:-45.5618,0,-124.723	1/1:21:0,21:0:0:21:752:-67.9956,-6.32163,0	1/1:60:0,60:0:0:60:2148:-193.574,-18.0618,0	0/1:48:23,25:23:824:25:900:-66.8716,0,-60.0339	0/1:16:12,4:12:428:4:144:-8.49714,0,-34.0423	0/1:62:32,30:32:1152:30:1072:-78.1204,0,-85.3263	0/1:19:6,13:6:212:13:468:-36.7401,0,-13.7052	0/1:84:40,44:40:1428:44:1580:-117.205,0,-103.531	1/1:80:0,80:0:0:80:2861:-257.726,-24.0824,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:61:32,29:32:1148:29:1040:-75.5515,0,-85.267	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	0/1:38:18,20:18:629:20:704:-52.2204,0,-45.4946	0/1:128:54,74:54:1924:74:2664:-201.471,0,-134.905	0/1:75:25,50:25:896:50:1796:-139.344,0,-58.3831	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:50:23,27:23:824:27:949:-70.6694,0,-59.4318	1/1:97:0,97:0:0:97:3473:-312.774,-29.1999,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:46:20,26:20:707:26:932:-70.3515,0,-50.1072	1/1:55:0,55:0:0:55:1976:-178.042,-16.5567,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:58:24,34:24:851:34:1224:-93.0073,0,-59.4497	0/1:43:31,12:31:1100:12:432:-26.2769,0,-86.366	1/1:43:0,43:0:0:43:1521:-137.179,-12.9443,0	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0
chr09	1446130	.	C	T	72551	PASS	AB=0.520246;ABP=14.0013;AC=130;AF=0.698925;AN=186;AO=3556;CIGAR=1X;DP=5047;DPB=5047;DPRA=18.2754;EPP=7724.77;EPPR=3203.85;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9109;MQMR=59.998;NS=93;NUMALT=1;ODDS=3.84514;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127399;QR=53161;RO=1490;RPL=0;RPP=7724.77;RPPR=3203.85;RPR=3556;RUN=1;SAF=3556;SAP=7724.77;SAR=0;SRF=1490;SRP=3238.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:17,12:17:603:12:432:-30.4913,0,-45.8696	1/1:49:0,49:0:0:49:1734:-156.341,-14.7505,0	1/1:69:0,69:0:0:69:2463:-221.923,-20.7711,0	1/1:104:0,104:0:0:104:3736:-336.439,-31.3071,0	0/1:52:23,29:23:824:29:1040:-78.2608,0,-58.8298	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	1/1:80:0,80:0:0:80:2876:-259.047,-24.0824,0	0/1:83:39,44:39:1388:44:1573:-116.875,0,-100.233	0/1:59:26,33:26:936:33:1169:-87.7545,0,-66.7987	0/1:65:31,34:31:1108:34:1224:-90.8997,0,-80.464	0/1:44:18,26:18:644:26:936:-71.3141,0,-45.0453	0/1:51:29,22:29:1035:22:788:-55.8923,0,-78.1105	0/1:33:13,20:13:464:20:716:-54.8337,0,-32.1635	0/1:36:18,18:18:622:18:648:-47.8148,0,-45.465	0/1:35:22,13:22:792:13:468:-31.9236,0,-61.0696	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:32:16,16:16:576:16:576:-42.542,0,-42.5416	1/1:27:0,27:0:0:27:972:-87.7897,-8.12781,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:145:51,94:51:1815:94:3340:-257.154,0,-119.981	0/1:91:40,51:40:1436:51:1821:-136.771,0,-102.144	0/1:72:53,19:53:1900:19:684:-40.2162,0,-149.604	1/1:46:0,46:0:0:46:1641:-147.481,-13.8474,0	0/1:74:35,39:35:1256:39:1404:-104.383,0,-91.0691	1/1:50:0,50:0:0:50:1783:-160.744,-15.0515,0	0/1:160:57,103:57:2026:103:3685:-283.686,0,-134.447	0/1:103:32,71:32:1152:71:2544:-198.186,0,-72.9841	0/1:26:14,12:14:489:12:432:-31.0214,0,-36.5121	0/1:108:40,68:40:1423:68:2433:-186.712,0,-95.8555	1/1:68:0,68:0:0:68:2431:-219.032,-20.47,0	0/1:60:22,38:22:784:38:1362:-104.819,0,-52.8221	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:139:58,81:58:2062:81:2916:-220.831,0,-144.007	1/1:185:0,185:0:0:185:6631:-596.648,-55.6906,0	0/1:60:31,29:31:1104:29:1044:-76.213,0,-81.6088	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:62:37,25:37:1324:25:900:-62.6572,0,-100.798	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/1:73:50,23:50:1788:23:824:-52.5081,0,-139.227	0/1:53:25,28:25:900:28:1008:-75.0818,0,-65.3664	0/1:41:18,23:18:648:23:817:-61.5085,0,-46.3097	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	1/1:50:1,49:1:36:49:1753:-154.455,-11.4532,0	1/1:143:1,142:1:36:142:5092:-454.824,-39.449,0	0/1:35:18,17:18:635:17:608:-44.516,0,-46.9409	0/1:55:30,25:30:1072:25:896:-64.4037,0,-80.2358	1/1:110:0,110:0:0:110:3947:-355.417,-33.1133,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:92:0,92:0:0:92:3296:-296.859,-27.6948,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:62:26,36:26:932:36:1284:-97.1996,0,-65.535	1/1:36:2,34:2:72:34:1212:-102.42,-4.00036,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:45:26,19:26:924:19:680:-47.9828,0,-69.9313	0/1:80:48,32:48:1711:32:1148:-79.5474,0,-130.193	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:95:0,95:0:0:95:3384:-304.773,-28.5979,0	0/1:38:16,22:16:576:22:792:-60.1665,0,-40.7358	0/1:35:20,15:20:716:15:540:-38.4005,0,-54.2317	1/1:31:1,30:1:36:30:1076:-93.5546,-5.73366,0	0/1:78:53,25:53:1883:25:900:-57.823,0,-146.268	0/1:66:45,21:45:1608:21:756:-48.4992,0,-125.142	1/1:21:0,21:0:0:21:748:-67.6346,-6.32163,0	1/1:58:0,57:0:0:57:2036:-183.3,-17.1587,0	0/1:46:22,24:22:788:24:864:-64.2352,0,-57.3974	0/1:15:11,4:11:396:4:140:-8.42913,0,-31.4673	0/1:66:32,34:32:1130:34:1211:-89.4282,0,-82.139	0/1:18:5,13:5:176:13:468:-37.0411,0,-10.7665	0/1:81:39,42:39:1383:42:1489:-109.919,0,-100.385	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:61:32,29:32:1148:29:1044:-75.912,0,-85.267	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:37:18,19:18:644:19:680:-50.3339,0,-47.1525	0/1:128:54,74:54:1906:74:2660:-201.111,0,-133.285	0/1:70:24,46:24:864:46:1643:-127.086,0,-57.0105	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:47:20,27:20:711:27:968:-73.2871,0,-50.1672	1/1:97:0,97:0:0:97:3474:-312.869,-29.1999,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:46:20,26:20:716:26:936:-70.7121,0,-50.9203	1/1:55:0,55:0:0:55:1972:-177.687,-16.5567,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:59:25,34:25:880:34:1224:-92.7063,0,-61.7569	0/1:43:32,11:32:1139:11:396:-23.0385,0,-89.8741	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	1/1:66:1,65:1:36:65:2332:-206.541,-16.2697,0
chr09	1492817	.	A	C	82619.5	PASS	AB=0.536596;ABP=80.2532;AC=57;AF=0.303191;AN=188;AO=3575;CIGAR=1X;DP=9930;DPB=9930;DPRA=1.59267;EPP=89.3401;EPPR=112.26;GTI=2;LEN=1;MEANALT=1.07812;MQM=59.9793;MQMR=59.9866;NS=94;NUMALT=1;ODDS=0.225917;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126442;QR=226114;RO=6345;RPL=50;RPP=7337.8;RPPR=12884.1;RPR=3525;RUN=1;SAF=2024;SAP=138.904;SAR=1551;SRF=3552;SRP=200.165;SRR=2793;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:19,26:19:665:26:918:-69.3896,0,-46.6264	0/0:91:91,0:91:3251:0:0:0,-27.3937,-292.811	0/0:112:112,0:112:3981:0:0:0,-33.7154,-358.481	0/0:142:140,2:140:4995:2:72:0,-35.9095,-442.86	0/1:44:22,22:22:788:22:784:-57.6386,0,-57.9995	0/1:33:13,20:13:459:20:716:-54.8337,0,-31.7101	0/0:128:126,1:126:4507:1:36:0,-34.9924,-402.2	0/1:108:65,43:65:2304:43:1529:-105.391,0,-175.108	0/1:167:77,90:77:2729:90:3208:-238.672,0,-195.581	0/1:50:31,19:31:1116:19:684:-46.8388,0,-85.7002	0/1:140:72,68:72:2575:68:2411:-175.1,0,-189.855	0/1:206:95,111:95:3384:111:3835:-283.339,0,-242.762	0/1:159:78,81:78:2775:81:2857:-209.502,0,-202.128	0/1:134:52,82:52:1864:82:2924:-223.058,0,-127.701	0/1:141:70,71:70:2520:71:2504:-183.167,0,-184.606	0/1:96:43,53:43:1536:53:1847:-137.607,0,-109.634	0/1:138:60,78:60:2152:78:2744:-205.658,0,-152.405	0/0:113:112,1:112:4032:1:32:0,-30.8171,-359.867	0/0:104:103,0:103:3704:0:0:0,-31.0061,-333.201	0/1:134:64,70:64:2279:70:2479:-183.026,0,-165.034	0/1:111:49,62:49:1760:62:2204:-165.211,0,-125.27	0/1:37:11,26:11:396:26:936:-73.4214,0,-24.8446	0/0:93:92,1:92:3288:1:36:0,-24.3975,-292.497	0/1:91:42,49:42:1487:49:1711:-126.878,0,-106.73	0/0:84:84,0:84:2950:0:0:0,-25.2865,-265.731	0/1:220:102,118:102:3625:118:4198:-311.776,0,-260.229	0/1:240:107,133:107:3823:133:4737:-354.241,0,-272.02	0/1:72:34,38:34:1197:38:1340:-99.2231,0,-86.3593	0/1:174:73,101:73:2574:101:3594:-271.288,0,-179.528	0/0:113:113,0:113:4048:0:0:0,-34.0164,-364.507	0/1:101:57,44:57:2017:44:1539:-108.391,0,-151.397	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/1:20:12,8:12:423:8:288:-20.2468,0,-32.3845	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/1:390:177,213:177:6294:213:7506:-558.186,0,-449.139	0/0:79:79,0:79:2823:0:0:0,-23.7814,-254.309	0/1:121:54,67:54:1936:67:2358:-176.052,0,-138.092	0/1:4:2,2:2:72:2:63:-4.77903,0,-5.6326	0/1:113:57,56:57:2031:56:1957:-142.386,0,-149.045	0/1:90:42,48:42:1503:48:1715:-127.542,0,-108.471	0/1:140:53,87:53:1896:87:3081:-235.374,0,-128.774	0/1:129:60,69:60:2135:69:2454:-182.279,0,-153.585	0/1:166:94,71:94:3342:71:2524:-177.38,0,-250.968	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/0:74:73,0:73:2615:0:0:0,-21.9752,-235.237	0/0:186:184,2:184:6516:2:72:0,-49.1549,-579.684	0/1:109:55,54:55:1968:54:1890:-137.562,0,-144.583	0/1:107:41,66:41:1449:66:2360:-180.448,0,-98.4937	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.731	0/1:10:5,5:5:176:5:176:-13.1747,0,-13.1747	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/1:26:7,19:7:248:19:667:-52.5278,0,-14.8374	0/1:118:42,76:42:1487:76:2691:-206.913,0,-98.6022	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/1:8:4,4:4:129:4:140:-10.5363,0,-9.51942	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:74:29,45:29:1021:45:1575:-119.763,0,-69.924	0/1:180:105,75:105:3752:75:2653:-184.83,0,-283.695	0/1:5:1,4:1:36:4:135:-10.9774,0,-2.09312	0/0:102:101,0:101:3585:0:0:0,-30.404,-322.498	0/1:191:88,103:88:3125:103:3615:-268.062,0,-223.98	0/1:65:29,35:29:1016:35:1247:-92.9093,0,-72.1235	0/0:64:63,0:63:2209:0:0:0,-18.9649,-198.715	0/1:129:52,77:52:1849:77:2729:-207.02,0,-127.855	0/1:78:31,47:31:1112:47:1662:-126.367,0,-76.911	0/0:87:87,0:87:3091:0:0:0,-26.1896,-278.416	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/1:147:72,75:72:2555:75:2676:-196.833,0,-185.949	0/1:16:9,7:9:324:7:244:-17.4829,0,-24.6894	0/1:74:39,35:39:1377:35:1230:-88.7262,0,-101.95	0/1:123:54,69:54:1936:69:2434:-182.286,0,-137.49	0/1:180:81,99:81:2889:99:3473:-258.596,0,-206.06	0/0:101:101,0:101:3610:0:0:0,-30.404,-325.105	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:119:47,72:47:1676:72:2568:-195.548,0,-115.305	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:91:90,1:90:3188:1:36:0,-23.7955,-282.608	0/1:91:35,56:35:1243:56:1987:-151.71,0,-84.7801	0/1:191:86,105:86:3069:105:3720:-277.506,0,-218.871	0/1:160:85,75:85:3056:75:2658:-191.301,0,-227.104	0/0:139:139,0:139:4950:0:0:0,-41.8432,-445.649	0/1:154:82,72:82:2924:72:2547:-183.121,0,-217.037	0/0:279:272,4:272:9698:4:140:0,-70.4667,-859.841	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:152:67,85:67:2376:85:3024:-226.635,0,-168.34	0/0:124:124,0:124:4426:0:0:0,-37.3277,-398.512	0/0:88:88,0:88:3146:0:0:0,-26.4906,-283.364	0/1:187:95,92:95:3416:92:3263:-237.597,0,-251.36	0/1:132:47,85:47:1671:85:3009:-231.305,0,-110.941	0/0:81:81,0:81:2883:0:0:0,-24.3834,-259.707	0/0:250:250,0:250:8932:0:0:0,-75.2575,-803.862
chr09	1512116	.	T	C	31757.5	PASS	AB=0.535467;ABP=40.9021;AC=59;AF=0.317204;AN=186;AO=1864;CIGAR=1X;DP=5548;DPB=5548;DPRA=1.11445;EPP=4041.95;EPPR=7994.03;GTI=0;LEN=1;MEANALT=1;MQM=59.9276;MQMR=59.9378;NS=93;NUMALT=1;ODDS=2.68025;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66485;QR=131890;RO=3684;RPL=1;RPP=4041.95;RPPR=7994.03;RPR=1863;RUN=1;SAF=1864;SAP=4050.63;SAR=0;SRF=3684;SRP=8002.71;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:9,11:9:320:11:388:-29.2368,0,-23.1218	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.556	0/0:130:130,0:130:4641:0:0:0,-39.1339,-417.847	0/1:36:21,15:21:756:15:536:-37.7377,0,-57.5301	0/1:31:12,19:12:432:19:661:-50.4797,0,-29.8893	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.892	0/1:141:53,88:53:1885:88:3154:-241.529,0,-127.458	0/1:73:29,44:29:1032:44:1575:-120.066,0,-71.2183	0/1:55:22,33:22:784:33:1174:-88.9183,0,-54.3273	0/1:35:14,21:14:504:21:735:-55.9354,0,-35.162	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:29:10,19:10:360:19:684:-53.1605,0,-24.0144	0/1:33:13,20:13:464:20:716:-54.8337,0,-32.1635	0/1:30:14,16:14:504:16:563:-41.9683,0,-36.6672	0/1:18:9,9:9:315:9:308:-22.6311,0,-23.2687	0/1:37:17,20:17:612:20:716:-53.6296,0,-44.2753	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:122:69,53:69:2476:53:1885:-133.201,0,-186.365	0/1:64:24,40:24:856:40:1424:-109.192,0,-58.0952	0/1:81:30,51:30:1065:51:1809:-138.707,0,-71.7763	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0831	0/1:92:48,44:48:1716:44:1552:-112.274,0,-127.031	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:194:102,92:102:3660:92:3292:-238.1,0,-271.203	0/1:110:48,62:48:1724:62:2228:-167.669,0,-121.837	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:197:99,98:99:3556:98:3516:-257.346,0,-260.942	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.41	0/1:78:41,37:41:1472:37:1302:-93.9989,0,-109.285	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	.:.:.:.:.:.:.:.	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:125:62,63:62:2228:63:2246:-164.774,0,-163.155	0/0:115:115,0:115:4071:0:0:0,-34.6184,-366.575	0/1:31:15,16:15:540:16:568:-42.1199,0,-39.6046	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:105:62,43:62:2220:43:1527:-106.114,0,-168.456	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/1:60:26,34:26:913:34:1207:-90.8735,0,-64.4219	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/1:35:17,18:17:612:18:648:-48.1158,0,-44.8774	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:68:68,0:68:2410:0:0:0,-20.47,-217.153	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.143	0/1:121:52,69:52:1853:69:2480:-187.028,0,-130.622	0/1:57:27,30:27:968:30:1052:-77.829,0,-70.2787	0/0:142:142,0:142:5097:0:0:0,-42.7463,-458.87	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4425	0/0:118:118,0:118:4233:0:0:0,-35.5215,-381.147	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:68:37,31:37:1332:31:1103:-79.1098,0,-99.7123	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:48:20,28:20:686:28:1000:-75.8659,0,-47.6063	0/1:80:38,42:38:1364:42:1491:-110.401,0,-98.9783	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:97:96,1:96:3448:1:36:0,-25.6016,-306.934	0/1:115:63,52:63:2264:52:1852:-132.341,0,-169.402	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:115:55,60:55:1957:60:2138:-158.066,0,-141.785	0/1:113:33,80:33:1188:80:2859:-223.531,0,-73.2099	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:56:28,28:28:1004:28:1004:-73.8182,0,-73.8182	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:90:51,39:51:1836:39:1388:-98.1257,0,-138.428	0/1:40:19,21:19:661:21:737:-54.6012,0,-47.5715	0/1:91:37,54:37:1328:54:1928:-146.398,0,-92.4203	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:72:72,0:72:2583:0:0:0,-21.6742,-232.714	0/1:33:10,23:10:360:23:824:-64.5493,0,-22.8103	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:64:38,26:38:1364:26:928:-64.5691,0,-103.795	0/1:160:68,92:68:2444:92:3296:-248.666,0,-172.05	0/1:67:30,37:30:1076:37:1311:-98.1219,0,-76.9823	0/0:22:21,1:21:748:1:36:0,-3.02438,-64.047	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	0/0:66:65,1:65:2331:1:36:0,-16.2697,-206.451	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:50:23,27:23:820:27:972:-72.7464,0,-59.071	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:61:23,38:23:824:38:1364:-104.698,0,-56.1205	0/1:32:9,23:9:324:23:816:-64.1288,0,-19.8729	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.554	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655
chr09	1512149	.	GTAA	ATAT,GTAT	115188	PASS	AB=0.471627,0.523741;ABP=27.1618,19.9194;AC=126,60;AF=0.677419,0.322581;AN=186;AO=3723,1819;CIGAR=1X2M1X,3M1X;DP=5564;DPB=5564.25;DPRA=46.3333,1.05003;EPP=8087.4,3952.92;EPPR=9.52472;GTI=0;LEN=4,1;MEANALT=1.86667,2.1746;MQM=59.9441,59.9621;MQMR=57.3333;NS=93;NUMALT=2;ODDS=2.17931;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=131476,64698;QR=83;RO=3;RPL=3723,1819;RPP=8087.4,3952.92;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=3723,1819;SAP=8087.4,3952.92;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:20:0,9,11:0:0:9,11:322,372:-56.7587,-30.4925,-27.7832,-26.615,0,-23.3037	1/1:97:0,97,0:0:0:97,0:3416,0:-307.656,-29.1999,0,-307.656,-29.1999,-307.656	1/1:95:0,95,0:0:0:95,0:3340,0:-300.81,-28.5979,0,-300.81,-28.5979,-300.81	1/1:134:0,133,0:0:0:133,0:4686,0:-421.614,-40.037,0,-421.614,-40.037,-421.614	1/2:36:0,21,15:0:0:21,15:754,531:-105.116,-43.6065,-37.2848,-61.8652,0,-57.3498	1/2:32:0,13,19:0:0:13,19:465,684:-94.0872,-56.1708,-52.2574,-38.2749,0,-32.5553	1/1:126:0,126,0:0:0:126,0:4437,0:-399.506,-37.9298,0,-399.506,-37.9298,-399.506	1/2:139:0,53,85:0:0:53,85:1851,3028:-397.321,-246.767,-230.812,-150.556,0,-124.969	1/2:71:0,29,42:0:0:29,42:1023,1508:-206.668,-123.371,-114.641,-83.6518,0,-71.0086	1/2:54:0,22,32:0:0:22,32:789,1148:-158.351,-93.9969,-87.3742,-64.7126,0,-55.0796	1/2:34:0,14,20:0:0:14,20:499,702:-98.1595,-57.4819,-53.2675,-41.0316,0,-35.011	1/2:22:0,11,11:0:0:11,11:381,392:-63.2685,-32.3087,-28.9974,-31.311,0,-27.9997	1/2:29:0,10,19:0:0:10,19:348,684:-84.4633,-56.1708,-53.1605,-28.6445,0,-22.925	1/2:33:0,13,20:0:0:13,20:466,716:-96.7544,-58.7471,-54.8337,-38.3654,0,-32.3448	1/2:31:0,14,17:0:0:14,17:501,604:-90.4291,-49.5731,-45.3587,-41.2125,0,-36.095	1/2:17:0,9,8:0:0:9,8:310,288:-49.0311,-23.8592,-21.1499,-25.5245,0,-23.1162	1/2:38:1,17,20:1:23:17,20:601,707:-104.583,-55.9356,-52.5806,-47.3038,0,-43.0449	1/1:22:0,22,0:0:0:22,0:779,0:-70.4326,-6.62266,0,-70.4326,-6.62266,-70.4326	1/1:20:0,20,0:0:0:20,0:703,0:-63.594,-6.0206,0,-63.594,-6.0206,-63.594	1/2:121:1,69,51:1:24:69,51:2444,1810:-344.516,-145.729,-126.814,-197.344,0,-183.849	1/2:64:0,25,39:0:0:25,39:867,1381:-183.315,-112.847,-105.321,-70.8178,0,-59.0776	1/2:81:0,31,50:0:0:31,50:1103,1773:-234.691,-144.798,-135.466,-90.2484,0,-75.1969	1/1:26:0,26,0:0:0:26,0:913,0:-82.4797,-7.82678,0,-82.4797,-7.82678,-82.4797	1/2:93:0,49,44:0:0:49,44:1734,1569:-269.494,-128.254,-113.504,-141.595,0,-128.349	1/1:52:0,52,0:0:0:52,0:1848,0:-166.601,-15.6536,0,-166.601,-15.6536,-166.601	1/2:192:0,102,90:0:0:102,90:3618,3215:-557.247,-262.48,-231.775,-295.123,0,-268.03	1/2:109:0,48,61:0:0:48,61:1682,2196:-316.331,-179.542,-165.093,-137.143,0,-118.78	1/2:13:0,6,7:0:0:6,7:215,252:-38.4558,-20.9217,-19.1156,-17.893,0,-15.7858	1/2:196:0,99,97:0:0:99,97:3502,3460:-567.646,-282.412,-252.61,-285.589,0,-256.389	1/1:119:0,118,0:0:0:118,0:4164,0:-374.576,-35.5215,0,-374.576,-35.5215,-374.576	1/2:75:0,41,34:0:0:41,34:1448,1207:-216.61,-98.7003,-86.358,-118.263,0,-108.028	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:10:0,10,0:0:0:10,0:353,0:-32.1088,-3.0103,0,-32.1088,-3.0103,-32.1088	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	.:.:.:.:.:.:.:.	1/1:6:0,6,0:0:0:6,0:215,0:-19.6992,-1.80618,0,-19.6992,-1.80618,-19.6992	1/2:128:0,64,64:0:0:64,64:2267,2296:-372.306,-187.635,-168.369,-185.027,0,-165.761	1/1:118:0,118,0:0:0:118,0:4168,0:-375.306,-35.5215,0,-375.306,-35.5215,-375.306	1/2:30:0,15,15:0:0:15,15:538,523:-86.7699,-42.883,-38.3676,-44.2404,0,-39.7249	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:105:0,62,43:0:0:62,43:2190,1544:-304.653,-126.309,-107.645,-178.701,0,-165.756	1/2:16:0,5,11:0:0:5,11:176,383:-45.8211,-31.4919,-29.9868,-14.6799,0,-11.3685	1/2:61:0,26,35:0:0:26,35:918,1239:-176.027,-101.278,-93.4508,-75.1023,0,-64.5662	1/2:28:0,14,14:0:0:14,14:494,500:-81.3457,-41.1218,-36.9073,-40.5788,0,-36.3644	1/2:35:0,19,16:0:0:19,16:645,572:-99.2952,-46.9969,-41.2774,-52.6474,0,-47.8309	1/1:65:0,65,0:0:0:65,0:2297,0:-206.993,-19.567,0,-206.993,-19.567,-206.993	1/1:69:0,69,0:0:0:69,0:2420,0:-218.053,-20.7711,0,-218.053,-20.7711,-218.053	1/1:91:0,91,0:0:0:91,0:3214,0:-289.483,-27.3937,0,-289.483,-27.3937,-289.483	1/2:121:0,54,67:0:0:54,67:1880,2385:-347.604,-194.737,-178.482,-153.218,0,-133.049	1/2:57:0,27,30:0:0:27,30:962,1072:-166.174,-87.7616,-79.6337,-78.7693,0,-69.7384	1/1:144:0,144,0:0:0:144,0:5084,0:-457.71,-43.3483,0,-457.71,-43.3483,-457.71	1/2:7:0,5,2:0:0:5,2:180,72:-20.9194,-6.23466,-4.72951,-15.0445,0,-14.4425	1/1:120:0,120,0:0:0:120,0:4249,0:-382.593,-36.1236,0,-382.593,-36.1236,-382.593	1/1:36:0,36,0:0:0:36,0:1264,0:-114.062,-10.8371,0,-114.062,-10.8371,-114.062	1/2:13:0,6,7:0:0:6,7:216,252:-38.5463,-20.9217,-19.1156,-17.9843,0,-15.8771	1/2:71:0,38,32:0:0:38,32:1330,1135:-200.672,-92.4655,-81.0264,-108.199,0,-98.5664	1/1:41:0,40,0:0:0:40,0:1419,0:-127.705,-12.0412,0,-127.705,-12.0412,-127.705	2/2:2:0,0,2:0:0:0,2:0,72:-6.836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chr09	1514630	.	G	T	92507	PASS	AB=0.493797;ABP=4.38417;AC=131;AF=0.696809;AN=188;AO=4558;CIGAR=1X;DP=6646;DPB=6646;DPRA=0;EPP=9900.58;EPPR=4526.19;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.3256;MQMR=59.8243;NS=94;NUMALT=1;ODDS=7.68555;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163149;QR=74180;RO=2083;RPL=0;RPP=9900.58;RPPR=4526.19;RPR=4558;RUN=1;SAF=4558;SAP=9900.58;SAR=0;SRF=2083;SRP=4526.19;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:15,23:15:540:23:815:-62.1016,0,-37.4974	1/1:104:0,104:0:0:104:3673:-330.682,-31.3071,0	1/1:61:1,60:1:36:60:2156:-190.534,-14.7646,0	1/1:168:0,168:0:0:168:6028:-542.412,-50.573,0	0/1:75:33,42:33:1158:42:1496:-112.357,0,-81.9443	0/1:41:17,24:17:604:24:844:-63.8986,0,-42.3484	1/1:94:0,94:0:0:94:3342:-300.485,-28.2968,0	0/1:88:59,29:59:2059:29:1044:-67.7842,0,-158.654	0/1:85:30,55:30:1061:55:1957:-150.352,0,-70.2118	0/1:70:30,40:30:1042:40:1440:-108.826,0,-72.9944	0/1:57:23,34:23:828:34:1220:-92.8913,0,-57.6854	0/1:59:34,25:34:1224:25:900:-63.5241,0,-92.6887	0/1:40:24,16:24:864:16:576:-40.1161,0,-66.0414	0/1:34:20,14:20:720:14:495:-34.4947,0,-54.8938	0/1:41:20,21:20:720:21:756:-55.9647,0,-52.7865	0/1:27:16,11:16:557:11:396:-27.8324,0,-42.3278	0/1:34:12,22:12:428:22:792:-61.3354,0,-28.6238	1/1:28:1,27:1:36:27:972:-84.1996,-4.83057,0	1/1:34:0,34:0:0:34:1205:-108.741,-10.235,0	0/1:140:91,49:91:3264:49:1764:-116.871,0,-251.836	0/1:111:56,55:56:1997:55:1961:-143.329,0,-146.588	0/1:94:65,29:65:2310:29:1029:-64.5959,0,-179.86	1/1:78:0,78:0:0:78:2789:-251.042,-23.4803,0	0/1:134:62,72:62:2224:72:2576:-191.625,0,-160.086	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:285:101,184:101:3621:184:6601:-506.927,0,-239.362	0/1:111:57,54:57:2044:54:1914:-139.095,0,-150.767	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:138:65,73:65:2310:73:2604:-192.896,0,-166.615	1/1:109:0,109:0:0:109:3912:-352.205,-32.8123,0	0/1:113:52,61:52:1868:61:2192:-163.174,0,-134.383	1/1:9:0,9:0:0:9:324:-29.4832,-2.70927,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:11:0,11:0:0:11:392:-35.6023,-3.31133,0	0/1:14:5,9:5:180:9:320:-24.736,0,-12.3376	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:124:62,62:62:2224:62:2215:-162.133,0,-162.966	1/1:202:0,202:0:0:202:7236:-650.944,-60.8081,0	0/1:76:45,31:45:1601:31:1116:-77.8725,0,-121.5	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:100:42,58:42:1463:58:2084:-157.615,0,-101.855	0/1:37:18,19:18:648:19:684:-50.6844,0,-47.5138	0/1:122:59,63:59:2120:63:2230:-164.19,0,-154.343	0/1:51:24,27:24:864:27:967:-71.9711,0,-62.73	0/1:55:29,26:29:1025:26:936:-68.0019,0,-76.004	1/1:121:0,121:0:0:121:4337:-390.205,-36.4246,0	1/1:100:0,100:0:0:100:3573:-321.71,-30.103,0	1/1:88:0,88:0:0:88:3144:-283.118,-26.4906,0	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/1:98:47,51:47:1677:51:1821:-134.64,0,-121.714	1/1:197:1,196:1:36:196:7037:-629.392,-55.7046,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:86:0,85:0:0:85:3044:-273.75,-25.5876,0	1/1:31:0,31:0:0:31:1112:-100.02,-9.33193,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:58:28,30:28:974:30:1072:-79.3103,0,-70.4714	1/1:57:0,57:0:0:57:2037:-183.486,-17.1587,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:21:0,21:0:0:21:752:-67.9778,-6.32163,0	0/1:63:25,38:25:862:38:1349:-102.676,0,-58.9258	0/1:100:54,46:54:1910:46:1656:-119.166,0,-142.071	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:131:0,130:0:0:130:4652:-417.808,-39.1339,0	0/1:148:78,70:78:2796:70:2516:-182.13,0,-207.328	0/1:76:35,41:35:1245:41:1470:-109.579,0,-89.4744	1/1:42:0,42:0:0:42:1500:-135.283,-12.6433,0	0/1:138:78,60:78:2788:60:2160:-153.122,0,-209.605	0/1:86:54,30:54:1929:30:1065:-70.4853,0,-147.868	1/1:29:0,29:0:0:29:1043:-94.1444,-8.72987,0	1/1:67:0,67:0:0:67:2408:-216.825,-20.169,0	0/1:43:32,11:32:1118:11:396:-23.0385,0,-87.9602	0/1:31:24,7:24:860:7:237:-12.3271,0,-68.3899	0/1:93:49,44:49:1752:44:1576:-114.118,0,-129.937	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:153:75,78:75:2628:78:2770:-203.436,0,-190.704	1/1:121:0,121:0:0:121:4325:-389.339,-36.4246,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:65:40,25:40:1417:25:896:-61.3934,0,-108.258	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:59:0,59:0:0:59:2120:-190.976,-17.7608,0	0/1:39:20,19:20:705:19:683:-50.0282,0,-52.0326	0/1:128:50,78:50:1785:78:2796:-213.337,0,-122.362	0/1:63:36,26:36:1296:26:928:-64.7578,0,-97.9202	1/1:45:0,45:0:0:45:1620:-146.062,-13.5464,0	0/1:51:27,24:27:968:24:860:-62.3293,0,-72.0564	1/1:85:2,83:2:72:83:2964:-260.07,-18.7508,0	1/1:25:0,25:0:0:25:900:-81.3025,-7.52575,0	0/1:66:36,30:36:1296:30:1069:-76.634,0,-97.076	1/1:65:0,65:0:0:65:2328:-209.737,-19.567,0	1/1:35:0,35:0:0:35:1260:-113.546,-10.5361,0	0/1:75:36,39:36:1292:39:1404:-104.001,0,-93.9825	0/1:52:35,17:35:1226:17:612:-39.7599,0,-94.9746	1/1:44:0,44:0:0:44:1580:-142.435,-13.2453,0	1/1:54:0,54:0:0:54:1940:-174.812,-16.2556,0
chr09	1514654	.	T	C	89843.9	PASS	AB=0.50063;ABP=3.02398;AC=131;AF=0.696809;AN=188;AO=4461;CIGAR=1X;DP=6450;DPB=6450;DPRA=0;EPP=9672.58;EPPR=4313.38;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.3779;MQMR=59.868;NS=94;NUMALT=1;ODDS=8.64664;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158552;QR=69498;RO=1985;RPL=4459;RPP=9672.58;RPPR=4313.38;RPR=2;RUN=1;SAF=4461;SAP=9689.95;SAR=0;SRF=1985;SRP=4313.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:13,24:13:452:24:830:-63.8197,0,-29.873	1/1:100:0,100:0:0:100:3560:-320.519,-30.103,0	1/1:60:1,59:1:36:59:2076:-183.492,-14.4635,0	1/1:166:0,166:0:0:166:5929:-533.567,-49.971,0	0/1:71:31,40:31:1049:40:1405:-105.372,0,-73.3379	0/1:38:15,23:15:532:23:819:-62.5434,0,-36.7739	1/1:91:0,91:0:0:91:3228:-290.237,-27.3937,0	0/1:84:55,29:55:1905:29:1025:-67.2742,0,-145.903	0/1:78:28,50:28:964:50:1775:-136.533,0,-63.5879	0/1:68:28,40:28:966:40:1427:-108.257,0,-66.7771	0/1:57:23,34:23:812:34:1211:-92.08,0,-56.2422	0/1:58:32,26:32:1088:26:917:-65.3658,0,-80.7448	0/1:37:21,16:21:748:16:572:-40.6576,0,-56.5072	0/1:31:18,13:18:644:13:468:-33.1052,0,-48.9587	0/1:37:17,20:17:600:20:716:-53.5693,0,-43.1911	0/1:25:15,10:15:532:10:360:-25.1959,0,-40.6873	0/1:32:10,22:10:343:22:784:-61.2157,0,-21.5676	1/1:28:1,27:1:36:27:951:-82.306,-4.83057,0	1/1:33:0,33:0:0:33:1180:-106.42,-9.93399,0	0/1:138:89,49:89:3122:49:1756:-116.753,0,-239.668	0/1:103:49,54:49:1706:54:1911:-141.243,0,-122.818	0/1:91:63,28:63:2211:28:996:-62.5612,0,-171.704	1/1:77:0,77:0:0:77:2737:-246.422,-23.1793,0	0/1:131:59,72:59:2037:72:2569:-191.852,0,-144.167	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:275:97,178:97:3404:178:6349:-488.564,0,-223.167	0/1:109:56,53:56:1972:53:1900:-138.443,0,-144.909	0/1:21:10,11:10:360:11:381:-28.299,0,-26.4227	0/1:137:65,72:65:2279:72:2540:-187.465,0,-164.104	1/1:109:0,109:0:0:109:3895:-350.697,-32.8123,0	0/1:112:51,61:51:1770:61:2175:-161.946,0,-125.864	1/1:9:0,9:0:0:9:324:-29.4832,-2.70927,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:10:0,10:0:0:10:338:-30.7443,-3.0103,0	0/1:14:5,9:5:176:9:320:-24.736,0,-11.9706	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:118:59,59:59:1990:59:2084:-152.169,0,-143.575	1/1:196:0,196:0:0:196:7013:-630.897,-59.0019,0	0/1:75:44,31:44:1551:31:1112:-77.8132,0,-117.304	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:100:42,57:42:1496:57:2033:-152.988,0,-104.773	0/1:37:18,19:18:640:19:675:-49.8763,0,-46.7912	0/1:115:56,59:56:1979:59:2124:-156.765,0,-143.766	0/1:50:23,27:23:798:27:944:-70.1913,0,-57.0851	0/1:53:28,25:28:990:25:866:-62.2993,0,-73.4581	1/1:115:0,115:0:0:115:4103:-369.169,-34.6185,0	1/1:98:0,98:0:0:98:3415:-307.511,-29.5009,0	1/1:85:0,84:0:0:84:2977:-267.863,-25.2865,0	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:94:44,50:44:1547:50:1780:-132.158,0,-111.224	1/1:196:1,195:1:36:195:6934:-619.92,-55.4036,0	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	1/1:86:0,86:0:0:86:3063:-275.805,-25.8886,0	1/1:31:0,31:0:0:31:1089:-97.9464,-9.33193,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:53:26,26:26:916:26:928:-67.9337,0,-66.8745	1/1:55:0,54:0:0:54:1936:-174.19,-16.2556,0	0/1:9:8,1:8:280:1:36:-0.889005,0,-22.83	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:63:25,38:25:854:38:1349:-102.676,0,-58.207	0/1:98:52,46:52:1798:46:1624:-116.913,0,-132.597	0/1:6:3,3:3:104:3:104:-7.89663,0,-7.89663	1/1:124:0,124:0:0:124:4405:-395.983,-37.3277,0	0/1:143:75,68:75:2641:68:2419:-174.911,0,-194.89	0/1:70:31,39:31:1104:39:1392:-104.395,0,-78.5985	1/1:40:0,40:0:0:40:1440:-129.869,-12.0412,0	0/1:133:72,61:72:2547:61:2175:-155.975,0,-189.431	0/1:78:49,29:49:1743:29:1035:-69.979,0,-133.673	1/1:27:0,27:0:0:27:957:-86.399,-8.12781,0	1/1:67:0,67:0:0:67:2382:-214.506,-20.169,0	0/1:42:30,12:30:1051:12:420:-25.4908,0,-82.2564	0/1:30:23,7:23:798:7:248:-13.6333,0,-63.1057	0/1:90:47,43:47:1660:43:1525:-110.448,0,-122.577	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:145:70,75:70:2418:75:2643:-194.404,0,-174.204	1/1:120:0,120:0:0:120:4283:-385.555,-36.1236,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:63:38,25:38:1336:25:888:-61.2741,0,-101.575	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:59:0,59:0:0:59:2088:-188.117,-17.7608,0	0/1:39:21,18:21:716:18:648:-46.8764,0,-53.0146	0/1:124:48,76:48:1699:76:2685:-204.565,0,-115.856	0/1:62:35,27:35:1235:27:945:-66.6673,0,-92.7896	1/1:44:0,44:0:0:44:1572:-141.743,-13.2453,0	0/1:53:27,26:27:960:26:919:-67.0147,0,-70.7333	1/1:86:2,84:2:72:84:3000:-263.308,-19.0519,0	1/1:25:0,25:0:0:25:886:-80.0513,-7.52575,0	0/1:67:36,31:36:1259:31:1093:-78.4776,0,-93.4426	1/1:66:0,66:0:0:66:2329:-209.813,-19.868,0	1/1:35:0,35:0:0:35:1235:-111.294,-10.5361,0	0/1:69:34,35:34:1190:35:1211:-88.4982,0,-86.6085	0/1:50:34,16:34:1202:16:576:-37.1235,0,-93.4327	1/1:43:0,43:0:0:43:1532:-138.133,-12.9443,0	1/1:53:0,53:0:0:53:1880:-169.432,-15.9546,0
chr09	1514666	.	T	C	35326.5	PASS	AB=0.50736;ABP=4.92819;AC=57;AF=0.303191;AN=188;AO=2074;CIGAR=1X;DP=6595;DPB=6595;DPRA=1.12077;EPP=4360.19;EPPR=9813.72;GTI=0;LEN=1;MEANALT=1.04918;MQM=59.8187;MQMR=59.3712;NS=94;NUMALT=1;ODDS=7.55295;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73665;QR=161317;RO=4518;RPL=2057;RPP=4360.19;RPPR=9813.72;RPR=17;RUN=1;SAF=2074;SAP=4506.64;SAR=0;SRF=4518;SRP=9813.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:23,15:23:819:15:536:-37.1357,0,-62.4624	0/0:105:105,0:105:3727:0:0:0,-31.6081,-335.536	0/0:60:58,2:58:2064:2:72:0,-11.2251,-179.032	0/0:167:167,0:167:5981:0:0:0,-50.272,-538.166	0/1:75:41,34:41:1459:34:1209:-86.5085,0,-109.028	0/1:39:23,16:23:805:16:572:-40.0733,0,-60.9916	0/0:93:93,0:93:3308:0:0:0,-27.9958,-297.415	0/1:86:29,57:29:1027:57:2043:-158.147,0,-66.8536	0/1:82:52,30:52:1847:30:1072:-72.108,0,-141.79	0/1:69:40,29:40:1436:29:1026:-71.7505,0,-108.767	0/1:56:34,22:34:1224:22:784:-54.0262,0,-93.5525	0/1:60:25,35:25:900:35:1229:-92.8333,0,-63.223	0/1:40:16,24:16:572:24:864:-66.0414,0,-39.7545	0/1:32:13,19:13:468:19:684:-52.2574,0,-32.8041	0/1:41:21,20:21:748:20:720:-52.7865,0,-55.2428	0/1:26:11,15:11:392:15:531:-40.2951,0,-27.7707	0/1:33:21,12:21:743:12:432:-29.2872,0,-57.224	0/0:28:27,1:27:963:1:32:0,-5.22953,-83.7866	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.623	0/1:143:49,94:49:1751:94:3334:-257.229,0,-114.798	0/1:108:51,57:51:1832:57:2039:-151.271,0,-132.63	0/1:93:28,65:28:977:65:2321:-180.995,0,-60.2163	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.28	0/1:133:72,61:72:2563:61:2178:-156.248,0,-190.743	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:284:182,102:182:6510:102:3637:-241.771,0,-500.317	0/1:111:55,56:55:1980:56:1987:-145.655,0,-145.002	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/1:137:69,68:69:2446:68:2392:-174.291,0,-179.009	0/0:109:109,0:109:3889:0:0:0,-32.8123,-350.159	0/1:112:60,52:60:2156:52:1852:-133.245,0,-160.506	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4832	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0106	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:124:60,64:60:2134:64:2242:-164.613,0,-154.846	0/0:203:203,0:203:7206:0:0:0,-61.1091,-648.314	0/1:75:31,44:31:1116:44:1572:-119.194,0,-78.1735	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:104:61,42:61:2180:42:1477:-101.855,0,-164.988	0/1:36:19,17:19:684:17:593:-42.8576,0,-50.9854	0/1:120:61,59:61:2184:59:2107:-153.775,0,-160.658	0/1:48:25,23:25:887:23:820:-59.6731,0,-65.6693	0/1:51:26,25:26:928:25:883:-64.4341,0,-68.4848	0/0:120:120,0:120:4271:0:0:0,-36.1236,-384.257	0/0:99:99,0:99:3533:0:0:0,-29.802,-318.12	0/0:87:87,0:87:3091:0:0:0,-26.1896,-278.356	0/1:20:8,12:8:288:12:419:-32.0221,0,-20.2468	0/1:98:51,47:51:1805:47:1673:-121.354,0,-133.217	0/0:199:198,1:198:7072:1:36:0,-56.3067,-632.507	0/1:11:6,5:6:216:5:171:-12.4141,0,-16.4792	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.051	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.02	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	0/1:57:29,28:29:1044:28:979:-71.1304,0,-77.0937	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.471	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3388	0/1:61:38,23:38:1368:23:809:-54.7655,0,-104.991	0/1:100:47,53:47:1680:53:1883:-139.645,0,-121.325	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:129:129,0:129:4606:0:0:0,-38.8329,-414.123	0/1:147:68,79:68:2440:79:2818:-209.607,0,-175.596	0/1:76:40,36:40:1428:36:1296:-94.0657,0,-105.805	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.346	0/1:140:65,75:65:2324:75:2625:-194.346,0,-167.273	0/1:84:31,53:31:1116:53:1876:-143.742,0,-75.4368	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1486	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.275	0/1:44:12,32:12:428:32:1132:-88.9048,0,-25.6135	0/1:30:7,23:7:248:23:824:-65.4524,0,-13.6333	0/1:94:44,49:44:1572:49:1741:-128.688,0,-113.486	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:146:71,75:71:2543:75:2644:-194.253,0,-185.13	0/0:119:119,0:119:4253:0:0:0,-35.8226,-382.859	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:63:25,38:25:896:38:1360:-103.736,0,-61.9955	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:59:59,0:59:2111:0:0:0,-17.7608,-190.166	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.5753	0/1:131:79,51:79:2819:51:1815:-124.125,0,-214.427	0/1:61:26,35:26:913:35:1228:-92.4583,0,-64.0811	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.266	0/1:51:25,26:25:892:26:928:-68.4573,0,-65.1903	0/0:85:83,2:83:2967:2:72:0,-18.7508,-260.338	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1296	0/1:67:31,36:31:1112:36:1275:-94.8833,0,-80.1871	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.874	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.069	0/1:74:37,37:37:1311:37:1309:-95.8094,0,-95.9564	0/1:52:16,36:16:576:36:1284:-100.181,0,-36.5214	0/0:44:44,0:44:1575:0:0:0,-13.2453,-141.984	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.172
chr09	1520860	.	A	G	128317	PASS	AB=0.523863;ABP=29.6442;AC=132;AF=0.702128;AN=188;AO=6295;CIGAR=1X;DP=8876;DPB=8876;DPRA=0;EPP=13672.4;EPPR=5596.72;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.9902;MQMR=59.9845;NS=94;NUMALT=1;ODDS=1.38691;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224787;QR=92339;RO=2576;RPL=6295;RPP=13672.4;RPPR=5596.72;RPR=0;RUN=1;SAF=0;SAP=13672.4;SAR=6295;SRF=0;SRP=5596.72;SRR=2576;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:122:0,122:0:0:122:4376:-394.012,-36.7257,0	1/1:121:0,121:0:0:121:4316:-388.618,-36.4246,0	1/1:233:0,233:0:0:233:8316:-748.451,-70.14,0	0/1:37:17,20:17:608:20:712:-53.2685,0,-43.9139	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	1/1:110:0,110:0:0:110:3948:-355.511,-33.1133,0	0/1:113:51,62:51:1813:62:2216:-165.688,0,-129.433	0/1:46:22,24:22:788:24:860:-63.8745,0,-57.3974	0/1:113:57,56:57:2052:56:2008:-146.977,0,-150.935	0/1:75:37,38:37:1332:38:1340:-98.3209,0,-97.6051	0/1:95:48,47:48:1716:47:1661:-121.177,0,-126.128	0/1:56:34,22:34:1224:22:792:-54.748,0,-93.6094	0/1:96:48,48:48:1724:48:1712:-125.466,0,-126.547	0/1:76:37,39:37:1328:39:1391:-102.61,0,-96.944	0/1:57:31,26:31:1116:26:932:-67.0402,0,-83.593	0/1:95:57,38:57:2052:38:1355:-93.6519,0,-156.353	1/1:55:1,54:1:36:54:1926:-170.017,-12.9584,0	1/1:49:0,49:0:0:49:1738:-156.704,-14.7505,0	0/1:139:46,93:46:1652:93:3312:-256.457,0,-107.125	0/1:101:41,60:41:1476:60:2147:-163.093,0,-102.542	0/1:75:39,36:39:1373:36:1280:-92.926,0,-101.289	1/1:130:3,127:3:108:127:4552:-399.771,-29.0587,0	0/1:103:42,61:42:1491:61:2184:-165.82,0,-103.478	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:348:162,186:162:5808:186:6619:-491.034,0,-418.074	0/1:195:92,103:92:3285:103:3673:-272.072,0,-237.168	0/1:56:25,31:25:900:31:1100:-82.4526,0,-64.4633	0/1:169:75,94:75:2688:94:3361:-251.831,0,-191.291	1/1:239:0,239:0:0:239:8513:-766.169,-71.9462,0	0/1:164:67,97:67:2404:97:3462:-262.424,0,-167.248	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	0/1:269:134,135:134:4816:135:4835:-354.326,0,-352.616	1/1:185:0,184:0:0:184:6584:-592.431,-55.3895,0	0/1:65:22,43:22:788:43:1531:-118.515,0,-51.6778	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:160:69,91:69:2480:91:3218:-241.678,0,-175.288	0/1:38:19,19:19:671:19:676:-49.7289,0,-49.2767	0/1:114:42,72:42:1504:72:2553:-195.703,0,-101.337	0/1:98:47,51:47:1692:51:1824:-134.94,0,-123.066	0/1:88:48,40:48:1724:40:1427:-102.236,0,-128.952	1/1:61:0,61:0:0:61:2174:-195.926,-18.3628,0	1/1:59:0,59:0:0:59:2088:-188.189,-17.7608,0	1/1:203:0,203:0:0:203:7256:-653.094,-61.1091,0	0/1:69:24,45:24:860:45:1592:-122.799,0,-56.9508	0/1:66:39,27:39:1400:27:957:-66.5767,0,-106.431	1/1:133:0,133:0:0:133:4757:-428.287,-40.037,0	0/1:13:2,11:2:72:11:392:-31.7067,0,-2.92333	1/1:167:0,167:0:0:167:5972:-537.584,-50.272,0	1/1:48:1,47:1:36:47:1680:-147.889,-10.8512,0	0/1:7:2,5:2:72:5:157:-12.3323,0,-4.72951	0/1:72:36,36:36:1296:36:1284:-94.1893,0,-95.2698	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:108:55,53:55:1976:53:1896:-138.407,0,-145.603	0/1:140:78,62:78:2795:62:2228:-158.64,0,-209.645	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	1/1:183:0,182:0:0:182:6520:-586.52,-54.7875,0	0/1:182:88,93:88:3156:93:3336:-245.759,0,-229.567	0/1:82:43,39:43:1536:39:1400:-101.615,0,-113.849	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	0/1:169:76,93:76:2720:93:3310:-247.244,0,-194.134	0/1:107:79,27:79:2836:27:972:-55.5289,0,-223.209	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	1/1:75:0,75:0:0:75:2676:-241.085,-22.5773,0	0/1:95:44,51:44:1576:51:1819:-135.393,0,-113.534	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	0/1:93:29,64:29:1044:64:2304:-179.625,0,-66.279	0/1:37:18,19:18:636:19:684:-50.7522,0,-46.4299	0/1:195:91,104:91:3241:104:3702:-274.68,0,-233.21	1/1:196:1,195:1:36:195:6976:-624.307,-55.4036,0	1/1:108:0,108:0:0:108:3868:-348.315,-32.5112,0	0/1:129:61,68:61:2196:68:2428:-179.943,0,-159.072	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:104:4,99:4:144:99:3540:-305.496,-18.0523,0	0/1:62:25,37:25:892:37:1317:-100.166,0,-61.9358	0/1:119:60,59:60:2160:59:2120:-155.246,0,-158.844	0/1:124:49,75:49:1755:75:2688:-204.837,0,-120.906	1/1:72:0,72:0:0:72:2558:-230.47,-21.6742,0	0/1:102:51,51:51:1832:51:1811:-132.566,0,-134.456	1/1:174:2,172:2:72:172:6140:-545.856,-45.5425,0	1/1:40:1,39:1:36:39:1400:-122.701,-8.44293,0	0/1:95:56,39:56:2012:39:1396:-97.3412,0,-152.755	1/1:86:0,86:0:0:86:3077:-277.157,-25.8886,0	1/1:51:1,50:1:36:50:1784:-157.244,-11.7543,0	0/1:114:61,53:61:2187:53:1891:-136.15,0,-162.778	0/1:75:42,33:42:1496:33:1170:-83.0294,0,-112.357	1/1:103:0,103:0:0:103:3668:-330.325,-31.0061,0	1/1:106:0,106:0:0:106:3790:-341.297,-31.9092,0
chr09	1698587	.	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chr09	1699695	.	T	A	49667.3	PASS	AB=0.500256;ABP=3.01363;AC=53;AF=0.288043;AN=184;AO=2939;CIGAR=1X;DP=9458;DPB=9458;DPRA=1.20129;EPP=6384.97;EPPR=14156.7;GTI=1;LEN=1;MEANALT=1.01786;MQM=59.6366;MQMR=59.9434;NS=92;NUMALT=1;ODDS=0.882453;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104610;QR=232429;RO=6518;RPL=2930;RPP=6307.03;RPPR=13802.8;RPR=9;RUN=1;SAF=2930;SAP=6307.03;SAR=9;SRF=6477;SRP=13802.8;SRR=41;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:18,26:18:629:26:893:-67.2343,0,-43.6885	0/0:158:158,0:158:5633:0:0:0,-47.5627,-507.092	0/0:133:133,0:133:4763:0:0:0,-40.037,-428.815	0/0:213:213,0:213:7585:0:0:0,-64.1194,-682.69	0/1:82:48,34:48:1708:34:1198:-83.406,0,-129.321	0/1:50:30,20:30:1067:20:696:-47.8761,0,-81.2897	0/0:61:60,1:60:2136:1:36:0,-14.7646,-188.907	0/1:235:116,119:116:4141:119:4208:-307.739,0,-302.131	0/1:100:44,56:44:1556:56:1972:-147.568,0,-110.226	0/1:114:40,74:40:1421:74:2635:-203.069,0,-93.8634	0/1:66:34,32:34:1224:32:1127:-81.8592,0,-90.5991	0/1:73:39,34:39:1366:34:1207:-86.93,0,-101.262	0/1:64:32,32:32:1148:32:1126:-81.9383,0,-84.3639	0/1:85:44,41:44:1568:41:1468:-106.819,0,-115.819	0/1:84:36,48:36:1292:48:1724:-130.152,0,-91.2972	0/1:57:25,32:25:892:32:1144:-86.1062,0,-62.6617	0/1:76:34,42:34:1211:42:1508:-113.112,0,-86.4172	0/0:56:56,0:56:1986:0:0:0,-16.8577,-179.013	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:227:125,102:125:4443:102:3653:-260.634,0,-331.707	0/1:154:83,71:83:2963:71:2529:-181.456,0,-220.544	0/1:150:55,95:55:1959:95:3378:-259.073,0,-131.43	0/0:91:91,0:91:3241:0:0:0,-27.3937,-291.911	0/1:139:64,75:64:2278:75:2664:-198.117,0,-163.438	0/0:48:48,0:48:1685:0:0:0,-14.4494,-151.934	0/1:321:127,194:127:4525:194:6901:-524.505,0,-310.778	0/1:189:98,91:98:3508:91:3226:-233.23,0,-259.036	0/1:42:21,21:21:752:21:756:-55.7193,0,-55.363	0/1:252:136,116:136:4835:116:4130:-296.022,0,-359.445	0/0:136:136,0:136:4849:0:0:0,-40.9401,-436.564	0/1:152:87,65:87:3092:65:2324:-162.995,0,-232.75	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/1:227:127,100:127:4531:100:3582:-254.233,0,-339.624	0/0:134:134,0:134:4799:0:0:0,-40.338,-432.065	0/1:53:27,26:27:953:26:928:-67.8673,0,-69.9383	.:.:.:.:.:.:.:.	0/1:134:75,59:75:2660:59:2104:-149.283,0,-199.237	0/1:31:12,19:12:432:19:675:-51.745,0,-29.8893	0/1:150:81,69:81:2895:69:2445:-175.121,0,-215.631	0/1:92:41,51:41:1455:51:1824:-136.737,0,-103.55	0/1:78:37,40:37:1320:40:1432:-105.636,0,-95.5629	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.343	0/0:160:160,0:160:5720:0:0:0,-48.1648,-514.918	0/0:156:154,2:154:5456:2:57:0,-41.5474,-485.757	0/1:103:54,49:54:1917:49:1729:-124.87,0,-141.763	0/1:168:84,84:84:3012:84:3012:-220.726,0,-220.738	0/0:138:138,0:138:4936:0:0:0,-41.5421,-444.12	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:175:175,0:175:6259:0:0:0,-52.6802,-563.213	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:108:73,35:73:2591:35:1252:-80.4592,0,-200.923	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.824	0/1:6:5,1:5:171:1:36:-1.79209,0,-13.9193	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:63:45,18:45:1607:18:629:-37.9555,0,-125.954	0/1:101:48,53:48:1724:53:1883:-139.334,0,-125.041	.:.:.:.:.:.:.:.	0/0:228:228,0:228:8150:0:0:0,-68.6348,-733.513	0/1:226:110,116:110:3935:116:4140:-304.748,0,-286.307	0/1:45:25,20:25:892:20:708:-50.4946,0,-67.0533	0/0:129:129,0:129:4604:0:0:0,-38.8329,-414.523	0/1:181:89,92:89:3196:92:3249:-238.127,0,-233.307	0/1:118:44,74:44:1572:74:2660:-204.117,0,-106.25	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.2927	0/0:79:77,2:77:2727:2:72:0,-16.9446,-238.835	0/1:62:36,26:36:1281:26:932:-65.5341,0,-96.9274	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:97:38,59:38:1368:59:2100:-160.061,0,-94.2209	0/1:55:27,28:27:972:28:989:-72.7654,0,-71.2413	0/1:183:88,95:88:3143:95:3361:-247.599,0,-227.868	0/0:193:193,0:193:6905:0:0:0,-58.0988,-621.513	0/0:121:121,0:121:4260:0:0:0,-36.4246,-383.57	0/1:116:70,46:70:2512:46:1648:-113.689,0,-191.143	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:126:126,0:126:4490:0:0:0,-37.9298,-404.257	0/1:103:59,44:59:2101:44:1563:-109.955,0,-158.352	0/1:192:98,94:98:3482:94:3372:-245.887,0,-255.794	0/1:79:53,26:53:1896:26:913:-58.698,0,-147.137	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.777	0/1:94:39,55:39:1391:55:1968:-149.09,0,-97.1914	0/0:179:179,0:179:6348:0:0:0,-53.8844,-571.414	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:71:32,39:32:1131:39:1396:-104.566,0,-80.7246	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.71	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/1:75:37,38:37:1307:38:1360:-100.097,0,-95.3535	0/1:78:24,54:24:864:54:1944:-151.716,0,-54.6022	0/0:172:172,0:172:6139:0:0:0,-51.7772,-552.481	0/0:124:124,0:124:4431:0:0:0,-37.3277,-398.961
chr09	1699721	.	AA	AG	102554	PASS	AB=0.522748;ABP=22.7689;AC=132;AF=0.702128;AN=188;AO=4983;CIGAR=1M1X;DP=7096;DPB=7096;DPRA=0;EPP=10478.8;EPPR=4489.61;GTI=0;LEN=1;MEANALT=1.11702;MQM=59.9787;MQMR=59.991;NS=94;NUMALT=1;ODDS=2.0818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177351;QR=73806;RO=2102;RPL=40;RPP=10478.8;RPPR=4489.61;RPR=4943;RUN=1;SAF=0;SAP=10823.5;SAR=4983;SRF=0;SRP=4567.45;SRR=2102;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:77:44,33:44:1525:33:1157:-81.2551,0,-114.358	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:97:0,97:0:0:97:3462:-311.792,-29.1999,0	1/1:135:1,134:1:36:134:4775:-426.305,-37.0408,0	0/1:53:20,33:20:674:33:1188:-91.274,0,-45.0179	0/1:19:10,9:10:350:9:324:-23.7863,0,-26.1161	1/1:58:0,58:0:0:58:2047:-184.5,-17.4597,0	0/1:111:54,57:54:1858:57:2021:-148.747,0,-134.078	0/1:86:44,41:44:1547:41:1472:-106.975,0,-113.718	0/1:52:17,35:17:610:35:1251:-97.2407,0,-39.5793	0/1:64:28,36:28:991:36:1296:-97.678,0,-70.237	0/1:96:55,41:55:1948:41:1444:-101.354,0,-146.696	0/1:82:36,46:36:1250:46:1623:-121.674,0,-88.1134	0/1:61:29,32:29:1013:32:1144:-84.9067,0,-73.1171	0/1:71:30,41:30:1040:41:1464:-110.683,0,-72.5341	0/1:58:31,27:31:1091:27:964:-69.6171,0,-81.0381	0/1:37:12,25:12:420:25:892:-69.4616,0,-26.9951	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:56:0,56:0:0:56:2003:-180.543,-16.8577,0	0/1:132:89,43:89:3139:43:1499:-95.4634,0,-243.001	0/1:99:43,56:43:1529:56:1970:-147.77,0,-108.1	0/1:78:58,20:58:2033:20:716:-41.2874,0,-159.759	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:104:51,53:51:1776:53:1886:-138.71,0,-128.813	1/1:94:0,94:0:0:94:3380:-304.414,-28.2968,0	0/1:144:59,85:59:2087:85:3018:-228.501,0,-144.644	0/1:161:79,81:79:2826:81:2868:-209.97,0,-206.193	0/1:40:19,21:19:684:21:748:-55.6041,0,-49.8491	0/1:187:86,100:86:3019:100:3548:-263.245,0,-215.657	1/1:122:0,122:0:0:122:4329:-389.785,-36.7257,0	0/1:70:36,33:36:1260:33:1180:-85.4353,0,-92.627	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:12:0,12:0:0:12:399:-36.228,-3.61236,0	1/1:9:0,9:0:0:9:324:-29.5025,-2.70927,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:186:73,113:73:2567:113:4041:-307.885,0,-175.288	1/1:103:0,103:0:0:103:3660:-329.581,-31.0061,0	0/1:65:24,41:24:827:41:1461:-112.217,0,-55.1761	1/1:4:0,4:0:0:4:144:-13.2995,-1.20412,0	0/1:71:43,28:43:1499:28:1004:-69.3027,0,-113.827	0/1:46:9,37:9:324:37:1324:-105.615,0,-15.6585	0/1:116:58,58:58:2038:58:2080:-152.551,0,-148.768	0/1:56:20,36:20:686:36:1292:-99.7261,0,-45.1994	0/1:47:28,19:28:963:19:659:-45.4839,0,-72.8284	1/1:30:0,29:0:0:29:1018:-91.7157,-8.72987,0	1/1:110:0,110:0:0:110:3902:-351.37,-33.1133,0	1/1:156:0,156:0:0:156:5544:-499.085,-46.9607,0	0/1:96:42,54:42:1470:54:1910:-143.275,0,-103.693	0/1:133:55,78:55:1945:78:2783:-210.674,0,-135.287	1/1:73:0,73:0:0:73:2607:-234.877,-21.9752,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	1/1:23:0,23:0:0:23:791:-71.5032,-6.92369,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:93:51,42:51:1791:42:1442:-102.025,0,-133.472	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	1/1:15:0,14:0:0:14:504:-45.3383,-4.21442,0	0/1:40:19,21:19:660:21:744:-55.2431,0,-47.6799	0/1:95:45,50:45:1567:50:1792:-132.965,0,-112.72	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:176:0,176:0:0:176:6266:-564.034,-52.9813,0	0/1:123:50,73:50:1751:73:2607:-197.851,0,-120.843	0/1:35:11,24:11:381:24:836:-65.0187,0,-24.0857	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:81:38,43:38:1353:43:1512:-111.986,0,-97.686	0/1:98:71,27:71:2517:27:963:-57.485,0,-197.28	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	1/1:59:2,57:2:72:57:2032:-176.316,-10.924,0	0/1:51:15,35:15:529:35:1256:-98.0408,0,-32.6328	0/1:15:3,12:3:108:12:428:-34.3434,0,-5.55972	0/1:149:69,80:69:2418:80:2838:-210.805,0,-173.02	0/1:96:53,43:53:1871:43:1518:-108.011,0,-139.768	0/1:106:41,64:41:1416:64:2288:-174.212,0,-95.7635	1/1:156:0,156:0:0:156:5585:-502.771,-46.9607,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:77:34,43:34:1193:43:1544:-116.074,0,-84.4937	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:79:0,79:0:0:79:2804:-252.599,-23.7814,0	0/1:80:41,39:41:1449:39:1395:-101.767,0,-106.622	0/1:191:96,94:96:3369:94:3343:-243.55,0,-245.89	0/1:61:22,39:22:784:39:1392:-107.216,0,-52.5213	1/1:75:0,75:0:0:75:2687:-242.074,-22.5773,0	0/1:57:18,39:18:630:39:1380:-107.34,0,-39.8663	1/1:190:7,182:7:250:182:6442:-557.024,-34.4075,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:72:37,35:37:1322:35:1252:-91.3109,0,-97.6084	1/1:74:0,74:0:0:74:2636:-237.487,-22.2762,0	1/1:67:0,67:0:0:67:2391:-215.447,-20.169,0	0/1:77:39,38:39:1324:38:1328:-96.6385,0,-96.2715	0/1:64:44,20:44:1558:20:720:-45.8629,0,-121.245	1/1:151:1,149:1:36:149:5309:-474.347,-41.9161,0	1/1:118:0,118:0:0:118:4218:-379.8,-35.5215,0
chr09	1738741	.	A	G	148109	PASS	AB=0.4758;ABP=37.1669;AC=132;AF=0.709677;AN=186;AO=7370;CIGAR=1X;DP=10900;DPB=10900;DPRA=0;EPP=16006.8;EPPR=7661.79;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9779;MQMR=59.9878;NS=93;NUMALT=1;ODDS=1.07245;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261982;QR=125574;RO=3527;RPL=0;RPP=16006.8;RPPR=7661.79;RPR=7370;RUN=1;SAF=0;SAP=16006.8;SAR=7370;SRF=0;SRP=7661.79;SRR=3527;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:27,13:27:964:13:464:-30.0563,0,-75.0356	1/1:166:0,166:0:0:166:5894:-530.571,-49.971,0	1/1:123:0,123:0:0:123:4383:-394.641,-37.0267,0	1/1:220:0,220:0:0:220:7798:-701.854,-66.2266,0	0/1:104:49,55:49:1764:55:1946:-144.103,0,-127.737	0/1:91:43,48:43:1532:48:1705:-126.339,0,-110.779	1/1:112:0,112:0:0:112:3978:-358.211,-33.7154,0	0/1:216:126,90:126:4472:90:3211:-224.19,0,-337.626	0/1:86:44,42:44:1564:42:1512:-110.486,0,-115.163	0/1:93:40,53:40:1406:53:1889:-142.291,0,-98.8399	0/1:34:13,21:13:464:21:752:-57.7712,0,-31.8625	0/1:65:36,29:36:1288:29:1009:-71.5485,0,-96.6566	0/1:74:24,50:24:839:50:1792:-139.286,0,-53.551	0/1:74:38,36:38:1356:36:1252:-90.703,0,-100.064	0/1:76:45,31:45:1608:31:1102:-76.6123,0,-122.132	0/1:81:35,46:35:1256:46:1640:-123.505,0,-88.9619	0/1:96:40,56:40:1406:56:1995:-150.924,0,-97.9368	1/1:71:0,71:0:0:71:2487:-224.082,-21.3731,0	1/1:29:0,29:0:0:29:1017:-91.8398,-8.72987,0	0/1:193:113,80:113:4016:80:2839:-197.649,0,-303.53	0/1:184:105,79:105:3720:79:2821:-198.738,0,-279.613	0/1:260:167,93:167:5956:93:3306:-219.474,0,-457.75	1/1:121:2,119:2:72:119:4180:-369.542,-29.5879,0	0/1:199:114,85:114:4064:85:3029:-212.93,0,-306.044	1/1:105:0,105:0:0:105:3729:-335.81,-31.6082,0	0/1:484:269,214:269:9592:214:7601:-538.523,0,-717.629	0/1:245:106,139:106:3778:139:4961:-372.885,0,-266.467	0/1:45:24,21:24:848:21:756:-54.8209,0,-63.0933	0/1:216:119,97:119:4228:97:3463:-246.86,0,-315.676	1/1:255:0,255:0:0:255:9053:-814.747,-76.7627,0	0/1:186:92,94:92:3284:94:3354:-246.085,0,-239.789	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	.:.:.:.:.:.:.:.	0/1:236:94,142:94:3353:142:5083:-386.57,0,-230.943	1/1:330:1,329:1:36:329:11630:-1042.97,-95.7416,0	0/1:46:18,28:18:640:28:1004:-76.8285,0,-44.0819	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:170:88,82:88:3124:82:2905:-210.51,0,-230.21	0/1:27:15,12:15:531:12:424:-30.3686,0,-39.9941	0/1:182:96,86:96:3406:86:3075:-222.191,0,-251.968	0/1:68:32,36:32:1131:36:1250:-92.3279,0,-81.6277	0/1:59:33,26:33:1141:26:898:-63.369,0,-85.2324	1/1:173:0,173:0:0:173:6153:-553.871,-52.0782,0	1/1:196:0,196:0:0:196:6996:-629.705,-59.0019,0	1/1:186:4,182:4:140:182:6474:-569.802,-43.047,0	0/1:129:68,61:68:2424:61:2179:-157.543,0,-179.583	0/1:198:96,102:96:3408:102:3601:-264.691,0,-247.33	1/1:210:0,210:0:0:210:7519:-676.749,-63.2163,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:131:0,131:0:0:131:4650:-418.662,-39.4349,0	1/1:70:0,70:0:0:70:2485:-223.902,-21.0721,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:71:39,32:39:1388:32:1144:-81.896,0,-103.846	1/1:86:1,85:1:36:85:3014:-267.891,-22.2903,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:71:40,31:40:1436:31:1116:-79.3786,0,-108.165	0/1:120:41,79:41:1455:79:2803:-216.387,0,-95.1216	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:227:0,227:0:0:227:8074:-726.679,-68.3338,0	0/1:383:217,166:217:7751:166:5894:-415.278,0,-582.282	0/1:110:44,66:44:1572:66:2351:-178.735,0,-108.658	1/1:99:0,99:0:0:99:3531:-317.994,-29.802,0	0/1:173:96,77:96:3408:77:2737:-194.495,0,-254.856	0/1:111:72,39:72:2576:39:1396:-92.5248,0,-198.675	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:93:0,93:0:0:93:3302:-297.397,-27.9958,0	0/1:86:43,43:43:1497:43:1508:-110.121,0,-109.132	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:134:81,53:81:2887:53:1873:-128.509,0,-219.729	0/1:94:49,45:49:1764:45:1607:-116.622,0,-130.747	0/1:138:73,64:73:2611:64:2275:-163.411,0,-193.636	1/1:182:2,180:2:72:180:6428:-571.766,-47.9507,0	1/1:111:0,111:0:0:111:3947:-355.232,-33.4143,0	0/1:152:93,58:93:3320:58:2055:-139.514,0,-253.312	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:118:0,118:0:0:118:4200:-378.182,-35.5215,0	0/1:131:71,60:71:2540:60:2110:-150.717,0,-189.416	0/1:179:101,78:101:3588:78:2770:-195.657,0,-269.242	0/1:109:53,56:53:1904:56:1954:-143.32,0,-138.825	1/1:74:0,74:0:0:74:2631:-237.037,-22.2762,0	0/1:107:52,55:52:1843:55:1976:-145.904,0,-133.939	1/1:220:0,220:0:0:220:7855:-706.891,-66.2266,0	1/1:34:0,34:0:0:34:1194:-107.764,-10.235,0	0/1:92:50,42:50:1796:42:1486:-106.338,0,-134.228	1/1:77:0,77:0:0:77:2727:-245.672,-23.1793,0	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	0/1:74:30,44:30:1067:44:1576:-119.855,0,-74.065	0/1:85:46,39:46:1644:39:1395:-100.261,0,-122.661	1/1:153:0,153:0:0:153:5458:-491.347,-46.0576,0	1/1:118:0,118:0:0:118:4196:-377.823,-35.5215,0
chr09	1748602	.	GAG	AAA,AAG	182454	PASS	AB=0.495108,0.502868;ABP=4.24256,3.43375;AC=132,56;AF=0.702128,0.297872;AN=188;AO=6339,2987;CIGAR=1X1M1X,1X2M;DP=9338;DPB=9343;DPRA=0,1.2455;EPP=13768,6489.2;EPPR=9.52472;GTI=0;LEN=3,1;MEANALT=1.73404,2.15;MQM=38.4457,51.1748;MQMR=57.3333;NS=94;NUMALT=2;ODDS=0.169688;PAIRED=0,0;PAIREDR=0;PAO=7.5,7.5;PQA=153.5,153.5;PQR=0;PRO=0;QA=224357,106267;QR=90;RO=3;RPL=6339,2987;RPP=13768,6489.2;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=6339,2987;SAP=13768,6489.2;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:31:0,17,14:0:0:17,14:595,500:-86.184,-40.7619,-35.6444,-45.7117,0,-41.4972	1/1:98:0,98,0:0:0:98,0:3439,0:-291.033,-29.5009,0,-291.033,-29.5009,-291.033	1/1:129:0,129,0:0:0:129,0:4542,0:-380.624,-38.8329,0,-380.624,-38.8329,-380.624	1/1:221:0,219,2:0:0:219,2:7760,72:-675.241,-65.9256,0,-669.371,-59.6958,-668.769	1/2:72:0,35,37:0:0:35,37:1243,1314:-198.299,-105.764,-95.2277,-92.8734,0,-81.7353	1/2:38:0,17,21:0:0:17,21:606,752:-106.711,-61.3352,-56.2177,-45.7179,0,-39.3963	1/1:147:0,147,0:0:0:147,0:5207,0:-450.069,-44.2514,0,-450.069,-44.2514,-450.069	1/2:195:0,107,88:0:0:107,88:3799,3123:-539.244,-253.051,-220.841,-286.477,0,-259.986	1/2:80:0,43,37:0:0:43,37:1524,1314:-221.354,-106.603,-93.6589,-115.093,0,-103.955	1/2:126:0,57,69:0:0:57,69:2000,2459:-356.562,-200.275,-183.117,-156.633,0,-135.862	1/2:83:0,43,40:0:0:43,40:1536,1436:-238.712,-117.404,-104.46,-121.661,0,-109.62	1/2:63:0,29,34:0:0:29,34:1024,1203:-176.091,-97.902,-89.1722,-78.5309,0,-68.2959	1/2:66:0,28,38:0:0:28,38:1004,1317:-182.381,-106.745,-98.3161,-75.9747,0,-64.5356	1/2:109:0,52,57:0:0:52,57:1843,2007:-296.91,-161.13,-145.476,-136.115,0,-118.956	1/2:49:0,19,30:0:0:19,30:672,1072:-139.989,-87.6305,-81.9109,-52.7046,0,-43.6737	1/2:53:0,24,29:0:0:24,29:856,1027:-145.968,-82.9647,-75.74,-63.3396,0,-54.6097	1/2:89:0,48,41:0:0:48,41:1717,1442:-247.993,-117.056,-102.607,-131.28,0,-118.938	1/1:51:0,51,0:0:0:51,0:1789,0:-152.444,-15.3525,0,-152.444,-15.3525,-152.444	1/1:54:0,54,0:0:0:54,0:1899,0:-159.216,-16.2556,0,-159.216,-16.2556,-159.216	1/2:220:0,115,104:0:0:115,104:4076,3704:-620.334,-301.325,-266.707,-319.038,0,-287.731	1/2:125:0,48,77:0:0:48,77:1704,2736:-347.376,-220.501,-206.052,-127.211,0,-104.031	1/2:146:0,46,99:0:0:46,99:1643,3488:-406.981,-282.337,-268.49,-124.733,0,-94.9314	1/1:52:0,52,0:0:0:52,0:1846,0:-161.928,-15.6536,0,-161.928,-15.6536,-161.928	1/2:100:0,45,55:0:0:45,55:1598,1964:-277.569,-158.518,-144.972,-119.332,0,-102.775	1/1:83:0,83,0:0:0:83,0:2910,0:-241.415,-24.9855,0,-241.415,-24.9855,-241.415	1/2:348:1,173,174:1:28:173,174:6114,6219:-966.598,-502.679,-452.819,-462.065,0,-411.904	1/2:189:0,99,90:0:0:99,90:3535,3212:-520.08,-257.871,-228.069,-262.549,0,-235.456	1/2:24:0,10,14:0:0:10,14:355,491:-66.5297,-39.8671,-36.8568,-26.9996,0,-22.7851	1/2:312:1,166,145:1:28:166,145:5906,5175:-866.927,-417.955,-370.202,-447.12,0,-405.689	1/1:122:0,122,0:0:0:122,0:4340,0:-356.126,-36.7257,0,-356.126,-36.7257,-356.126	1/2:135:0,75,59:0:0:75,59:2622,2101:-375.989,-170.845,-148.268,-205.216,0,-187.455	1/1:7:0,7,0:0:0:7,0:252,0:-21.0654,-2.10721,0,-21.0654,-2.10721,-21.0654	1/1:24:0,24,0:0:0:24,0:854,0:-69.0334,-7.22472,0,-69.0334,-7.22472,-69.0334	1/1:6:0,6,0:0:0:6,0:212,0:-18.2581,-1.80618,0,-18.2581,-1.80618,-18.2581	1/2:5:0,4,1:0:0:4,1:136,36:-13.5217,-3.2882,-2.08408,-10.5844,0,-10.2833	1/1:6:0,6,0:0:0:6,0:208,0:-17.7155,-1.80618,0,-17.7155,-1.80618,-17.7155	1/2:164:0,69,95:0:0:69,95:2454,3400:-460.151,-276.704,-255.933,-183.787,0,-155.19	1/1:266:0,266,0:0:0:266,0:9361,0:-771.011,-80.074,0,-771.011,-80.074,-771.011	1/2:102:0,48,54:0:0:48,54:1710,1884:-283.097,-152.537,-138.087,-130.901,0,-114.645	1/2:3:0,1,2:0:0:1,2:34,72:-8.73008,-6.17488,-5.87385,-2.88659,0,-2.28453	1/2:145:0,65,80:0:0:65,80:2305,2840:-399.325,-227.795,-208.228,-171.867,0,-147.785	1/2:48:0,21,27:0:0:21,27:737,963:-132.986,-77.9434,-71.6217,-55.3793,0,-47.2514	1/2:142:1,89,52:1:34:89,52:3160,1856:-380.874,-146.453,-122.414,-231.973,0,-219.072	1/2:50:0,23,27:0:0:23,27:818,960:-143.324,-78.5033,-71.5796,-65.1715,0,-57.0437	1/2:51:0,21,30:0:0:21,30:719,1043:-141.56,-84.8841,-78.5624,-57.0143,0,-47.9834	1/1:111:0,111,0:0:0:111,0:3949,0:-331.512,-33.4143,0,-331.512,-33.4143,-331.512	1/1:120:0,120,0:0:0:120,0:4218,0:-353.374,-36.1236,0,-353.374,-36.1236,-353.374	1/1:175:0,175,0:0:0:175,0:6211,0:-540.528,-52.6803,0,-540.528,-52.6803,-540.528	1/2:132:0,69,63:0:0:69,63:2448,2251:-376.737,-183.526,-162.755,-193.562,0,-174.597	1/2:124:0,76,48:0:0:76,48:2685,1703:-349.782,-138.778,-115.899,-211.354,0,-196.904	1/1:206:0,206,0:0:0:206,0:7287,0:-614.812,-62.0122,0,-614.812,-62.0122,-614.812	1/2:8:0,4,3:0:0:4,3:144,108:-20.2062,-8.80525,-7.60113,-11.3982,0,-10.4951	1/1:92:0,92,0:0:0:92,0:3277,0:-275.83,-27.6948,0,-275.83,-27.6948,-275.83	1/1:70:0,70,0:0:0:70,0:2479,0:-208.729,-21.0721,0,-208.729,-21.0721,-208.729	1/2:8:0,5,3:0:0:5,3:180,108:-22.8732,-9.14675,-7.6416,-14.0778,0,-13.1747	1/2:111:0,67,44:0:0:67,44:2373,1578:-303.182,-127.542,-107.37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chr09	1770637	.	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chr09	1771680	.	C	A	46329.3	PASS	AB=0.548374;ABP=101.75;AC=58;AF=0.308511;AN=188;AO=2674;CIGAR=1X;DP=7409;DPB=7409;DPRA=1.39015;EPP=5809.53;EPPR=10222;GTI=3;LEN=1;MEANALT=1;MQM=59.9652;MQMR=59.9966;NS=94;NUMALT=1;ODDS=0.602417;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95760;QR=169013;RO=4734;RPL=2674;RPP=5809.53;RPPR=10222;RPR=0;RUN=1;SAF=0;SAP=5809.53;SAR=2674;SRF=0;SRP=10282.8;SRR=4734;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:21,15:21:756:15:536:-37.7377,0,-57.5301	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:127:127,0:127:4537:0:0:0,-38.2308,-408.496	0/0:131:130,1:130:4619:1:36:0,-35.8367,-412.279	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/1:41:15,26:15:536:26:935:-72.1272,0,-36.2326	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:151:76,75:76:2715:75:2684:-196.349,0,-199.138	0/1:47:21,26:21:744:26:928:-69.6898,0,-53.1359	0/1:51:30,21:30:1063:21:756:-53.0147,0,-80.6283	0/1:92:46,46:46:1626:46:1652:-121.271,0,-118.933	0/1:151:70,81:70:2492:81:2903:-216.049,0,-179.078	0/1:96:48,48:48:1712:48:1728:-126.906,0,-125.467	0/1:70:33,37:33:1184:37:1332:-99.1103,0,-85.7962	0/1:82:34,48:34:1207:48:1728:-131.121,0,-84.2508	0/1:82:34,48:34:1220:48:1719:-130.31,0,-85.4223	0/1:45:20,25:20:711:25:892:-67.0533,0,-50.7693	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.387	0/1:147:69,78:69:2476:78:2791:-207.177,0,-178.842	0/1:114:54,60:54:1940:60:2129:-157.559,0,-140.559	0/1:91:26,65:26:928:65:2336:-183.105,0,-56.4445	0/0:80:79,0:79:2809:0:0:0,-23.7814,-252.689	0/1:54:22,32:22:788:32:1124:-85.2087,0,-54.9892	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/1:210:101,109:101:3608:109:3904:-288.337,0,-261.71	0/1:226:104,122:104:3719:122:4358:-324.362,0,-266.878	0/1:48:29,19:29:1040:19:684:-47.4409,0,-79.4649	0/1:246:117,129:117:4184:129:4628:-342.628,0,-302.689	0/0:99:99,0:99:3531:0:0:0,-29.802,-318	0/1:81:37,44:37:1304:44:1569:-117.117,0,-93.2779	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:224:110,114:110:3936:114:4068:-298.867,0,-287.002	0/0:59:59,0:59:2081:0:0:0,-17.7608,-187.559	0/1:57:29,28:29:1031:28:1000:-73.1567,0,-75.9439	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:100:52,48:52:1864:48:1706:-123.722,0,-137.936	0/1:47:19,28:19:676:28:1008:-76.8879,0,-47.0196	0/1:136:50,86:50:1788:86:3076:-236.1,0,-120.263	0/1:83:44,39:44:1571:39:1395:-100.863,0,-116.695	0/1:84:47,37:47:1671:37:1328:-94.5357,0,-125.39	0/0:74:74,0:74:2629:0:0:0,-22.2762,-236.856	0/0:69:68,1:68:2436:1:36:0,-17.1728,-215.897	0/0:94:93,1:93:3319:1:36:0,-24.6985,-295.33	0/1:40:13,27:13:464:27:972:-75.7567,0,-30.0563	0/1:116:69,47:69:2468:47:1684:-116.928,0,-187.455	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.647	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:125:64,61:64:2292:61:2175:-158.382,0,-168.913	0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8116	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:74:30,44:30:1067:44:1580:-120.215,0,-74.065	0/1:95:45,50:45:1595:50:1800:-133.684,0,-115.242	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:149:149,0:149:5352:0:0:0,-44.8535,-481.81	0/1:122:54,68:54:1936:68:2422:-181.319,0,-137.791	0/1:38:11,27:11:392:27:972:-76.3588,0,-24.1809	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:117:42,75:42:1500:75:2692:-207.303,0,-100.074	0/1:163:54,109:54:1911:109:3916:-303.564,0,-123.196	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.709	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.772	0/1:47:22,25:22:788:25:900:-67.1726,0,-57.0964	0/1:19:4,15:4:140:15:529:-42.2211,0,-7.22501	0/1:83:24,59:24:860:59:2116:-165.723,0,-52.7363	0/1:48:14,34:14:492:34:1208:-94.5459,0,-30.1629	0/1:106:44,62:44:1568:62:2224:-168.515,0,-109.502	0/0:37:36,1:36:1292:1:36:0,-7.53983,-112.985	0/0:147:147,0:147:5252:0:0:0,-44.2514,-472.807	0/1:65:29,36:29:1040:36:1296:-97.377,0,-74.3474	0/0:8:8,0:8:264:0:0:0,-2.40824,-24.0803	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:85:37,48:37:1315:48:1728:-130.218,0,-93.0635	0/1:137:54,83:54:1924:83:2960:-225.393,0,-132.196	0/1:75:34,41:34:1224:41:1476:-110.559,0,-87.8898	0/0:94:93,1:93:3336:1:36:0,-24.6985,-296.859	0/1:67:25,42:25:892:42:1504:-115.486,0,-60.4307	0/0:126:126,0:126:4515:0:0:0,-37.9298,-406.517	0/0:35:35,0:35:1242:0:0:0,-10.536,-112.083	0/1:85:39,46:39:1392:46:1646:-122.833,0,-99.9915	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/1:130:71,59:71:2535:59:2115:-151.484,0,-189.267	0/1:78:28,50:28:996:50:1796:-138.442,0,-66.4745	0/0:116:115,1:115:4112:1:36:0,-31.3212,-366.667	0/0:119:119,0:119:4247:0:0:0,-35.8226,-382.41
chr09	1773050	.	A	T	81513.9	PASS	AB=0.509117;ABP=8.07831;AC=57;AF=0.303191;AN=188;AO=3594;CIGAR=1X;DP=11107;DPB=11107;DPRA=1.14009;EPP=78.7254;EPPR=115.4;GTI=0;LEN=1;MEANALT=1.13846;MQM=59.9967;MQMR=59.9751;NS=94;NUMALT=1;ODDS=2.81772;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127653;QR=268642;RO=7499;RPL=1620;RPP=78.7254;RPPR=114.68;RPR=1974;RUN=1;SAF=2;SAP=7789.92;SAR=3592;SRF=1;SRP=16278.2;SRR=7498;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:30,34:30:1076:34:1212:-89.7607,0,-77.5271	0/0:83:80,3:80:2876:3:108:0,-14.9103,-249.001	0/0:264:264,0:264:9466:0:0:0,-79.4719,-851.896	0/0:254:254,0:254:9088:0:0:0,-76.4616,-817.894	0/1:40:18,22:18:648:22:788:-59.2036,0,-46.6107	0/1:50:24,26:24:860:26:928:-68.7868,0,-62.6703	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.53	0/1:198:93,105:93:3336:105:3736:-276.839,0,-240.853	0/1:103:46,57:46:1652:57:2036:-152.506,0,-117.962	0/1:97:55,42:55:1972:42:1496:-105.735,0,-148.555	0/1:171:89,82:89:3196:82:2911:-210.75,0,-236.386	0/1:135:75,60:75:2696:60:2126:-150.968,0,-202.245	0/1:109:55,54:55:1963:54:1884:-137.024,0,-144.132	0/1:188:102,85:102:3631:85:3027:-216.009,0,-270.113	0/1:69:32,37:32:1148:37:1312:-97.6106,0,-82.8138	0/1:111:60,51:60:2148:51:1798:-128.686,0,-160.173	0/1:74:37,36:37:1315:36:1267:-91.9971,0,-96.3161	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:92:92,0:92:3259:0:0:0,-27.6948,-293.485	0/1:184:82,101:82:2940:101:3608:-269.478,0,-209.386	0/1:221:110,111:110:3952:111:3964:-290.424,0,-289.343	0/1:70:22,48:22:792:48:1701:-132.303,0,-50.5336	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:45:17,28:17:612:28:996:-76.4085,0,-41.8671	0/0:45:43,1:43:1540:1:36:0,-10.0069,-135.295	0/1:298:165,133:165:5928:133:4741:-337.142,0,-443.919	0/1:228:126,101:126:4516:101:3572:-253.035,0,-337.953	0/1:45:19,26:19:680:26:928:-70.2919,0,-47.9828	0/1:297:158,139:158:5668:139:4972:-358.223,0,-420.832	0/0:157:157,0:157:5616:0:0:0,-47.2617,-505.549	0/1:91:44,47:44:1562:47:1680:-124.093,0,-113.476	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:15:14,0:14:504:0:0:0,-4.21442,-45.3383	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/0:43:42,1:42:1504:1:36:0,-9.34601,-132.056	0/1:193:92,101:92:3283:101:3578:-264.131,0,-237.591	0/0:100:98,2:98:3503:2:72:0,-23.2663,-308.643	0/1:118:59,59:59:2116:59:2086:-152.488,0,-155.187	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:161:78,83:78:2796:83:2969:-218.977,0,-203.414	0/1:63:35,28:35:1256:28:992:-70.6295,0,-94.3804	0/1:219:110,109:110:3948:109:3868:-282.391,0,-289.585	0/1:73:43,30:43:1536:30:1044:-72.2917,0,-116.558	0/1:77:40,37:40:1427:37:1309:-94.9302,0,-105.547	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946	0/0:132:132,0:132:4736:0:0:0,-39.736,-426.292	0/0:164:155,9:155:5539:9:324:0,-19.8631,-469.13	0/1:90:34,56:34:1215:56:1988:-152.102,0,-82.5631	0/1:194:93,101:93:3321:101:3592:-265.089,0,-240.707	0/0:148:148,0:148:5296:0:0:0,-44.5524,-476.283	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/0:200:199,1:199:7148:1:36:0,-56.6077,-639.776	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:36:23,13:23:828:13:460:-30.8983,0,-64.007	0/1:180:72,108:72:2588:108:3841:-291.703,0,-178.983	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:18:4,14:4:144:14:496:-39.5557,0,-7.89508	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:119:43,76:43:1544:76:2700:-207.423,0,-103.431	0/1:195:106,89:106:3780:89:3133:-223.497,0,-281.696	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	0/0:156:156,0:156:5579:0:0:0,-46.9607,-502.23	0/1:186:87,99:87:3115:99:3498:-259.041,0,-224.455	0/1:103:63,40:63:2249:40:1424:-97.4514,0,-171.665	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/1:162:81,81:81:2895:81:2896:-212.109,0,-212.019	0/1:215:71,144:71:2536:144:5132:-397.303,0,-163.77	0/0:160:160,0:160:5726:0:0:0,-48.1648,-515.453	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:59:35,24:35:1256:24:864:-60.3218,0,-95.5845	0/1:32:15,17:15:536:17:600:-44.6962,0,-38.8552	0/1:197:100,97:100:3600:97:3454:-251.771,0,-264.902	0/1:97:46,51:46:1652:51:1808:-133.802,0,-119.769	0/1:249:115,133:115:4080:133:4712:-349.226,0,-292.372	0/0:214:212,1:212:7593:1:36:0,-60.8809,-679.808	0/0:114:112,2:112:4009:2:68:0,-27.8597,-354.54	0/1:151:77,74:77:2760:74:2632:-191.673,0,-203.186	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:146:146,0:146:5211:0:0:0,-43.9504,-469.129	0/1:138:69,69:69:2460:69:2463:-180.382,0,-180.113	0/1:150:79,71:79:2844:71:2528:-182.618,0,-211.043	0/1:62:37,25:37:1324:25:900:-62.6572,0,-100.798	0/0:129:128,0:128:4600:0:0:0,-38.5318,-413.803	0/1:55:29,26:29:1044:26:924:-66.921,0,-77.7182	0/0:128:127,0:127:4549:0:0:0,-38.2308,-409.254	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:80:38,42:38:1360:42:1476:-109.049,0,-98.6182	0/0:113:112,0:112:4032:0:0:0,-33.7154,-362.706	0/0:178:178,0:178:6386:0:0:0,-53.5833,-574.826	0/1:311:158,151:158:5663:151:5322:-385.741,0,-415.92	0/1:92:25,67:25:900:67:2345:-183.614,0,-53.6263	0/0:161:161,0:161:5780:0:0:0,-48.4658,-520.313	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916
chr09	1781990	.	T	G	75493.8	PASS	AB=0.474255;ABP=22.1298;AC=128;AF=0.688172;AN=186;AO=3737;CIGAR=1X;DP=5489;DPB=5489;DPRA=30.1374;EPP=8117.8;EPPR=3783.56;GTI=0;LEN=1;MEANALT=1.03297;MQM=59.9885;MQMR=59.9891;NS=93;NUMALT=1;ODDS=0.437069;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133327;QR=62504;RO=1749;RPL=0;RPP=8117.8;RPPR=3783.56;RPR=3737;RUN=1;SAF=3737;SAP=8117.8;SAR=0;SRF=1749;SRP=3800.92;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:12,3:12:424:3:108:-5.55972,0,-33.981	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	1/1:179:0,179:0:0:179:6408:-576.808,-53.8844,0	1/1:161:0,161:0:0:161:5740:-516.629,-48.4658,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:24:9,15:9:320:15:540:-41.7118,0,-21.9176	1/1:88:0,88:0:0:88:3143:-283.095,-26.4906,0	0/1:66:41,25:41:1463:25:884:-60.0098,0,-112.097	0/1:69:41,28:41:1472:28:996:-69.1838,0,-112.005	0/1:47:28,19:28:1004:19:684:-47.7419,0,-76.5275	0/1:40:18,22:18:648:22:788:-59.2036,0,-46.6107	0/1:64:33,31:33:1184:31:1100:-80.0444,0,-87.6024	0/1:47:25,22:25:900:22:784:-56.7342,0,-67.1726	0/1:32:15,17:15:532:17:608:-45.4191,0,-38.5801	0/1:48:22,26:22:792:26:936:-70.11,0,-57.1562	0/1:24:9,15:9:316:15:527:-40.5355,0,-21.5541	0/1:29:9,20:9:324:20:712:-55.6768,0,-20.776	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:89:50,39:50:1787:39:1392:-98.7873,0,-134.32	0/1:121:63,58:63:2244:58:2080:-151.046,0,-165.799	0/1:56:43,13:43:1540:13:468:-25.602,0,-122.035	1/1:84:0,84:0:0:84:2990:-269.332,-25.2865,0	0/1:52:33,19:33:1180:19:680:-45.8756,0,-90.8545	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:134:70,64:70:2508:64:2280:-165.124,0,-185.634	0/1:168:76,92:76:2696:92:3296:-246.286,0,-192.31	0/1:18:11,7:11:396:7:243:-16.7889,0,-30.5642	0/1:174:98,76:98:3516:76:2696:-190.503,0,-264.27	1/1:96:0,96:0:0:96:3414:-307.475,-28.8989,0	0/1:122:67,54:67:2384:54:1926:-136.871,0,-178.073	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:95:56,39:56:2016:39:1387:-96.5303,0,-153.115	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:29:13,16:13:445:16:567:-42.6309,0,-31.6455	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:111:61,50:61:2165:50:1792:-128.148,0,-161.701	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:57:29,28:29:1027:28:1004:-73.5172,0,-75.5835	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	0/1:35:14,21:14:504:21:752:-57.4702,0,-35.162	1/1:59:1,58:1:36:58:2071:-183.062,-14.1625,0	1/1:42:0,42:0:0:42:1487:-134.124,-12.6433,0	1/1:88:0,88:0:0:88:3139:-282.736,-26.4906,0	0/1:59:21,38:21:744:38:1346:-103.677,0,-49.5236	0/1:96:48,48:48:1728:48:1707:-125.016,0,-126.906	1/1:79:0,79:0:0:79:2827:-254.665,-23.7814,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:74:0,74:0:0:74:2643:-238.116,-22.2762,0	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:109:53,56:53:1908:56:1983:-145.932,0,-139.185	1/1:20:1,19:1:36:19:680:-57.9309,-2.42233,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:64:32,32:32:1140:32:1148:-84.3639,0,-83.6433	0/1:75:31,44:31:1116:44:1550:-117.213,0,-78.1744	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:148:0,148:0:0:148:5316:-478.572,-44.5524,0	0/1:83:41,42:41:1472:42:1474:-107.967,0,-107.791	0/1:36:25,11:25:896:11:392:-24.783,0,-70.1233	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:88:43,45:43:1532:45:1596:-117.438,0,-111.682	0/1:147:99,48:99:3499:48:1716:-110.474,0,-270.867	1/1:28:0,28:0:0:28:992:-89.5944,-8.42884,0	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	0/1:33:17,15:17:612:15:527:-37.7679,0,-45.4206	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/1:117:65,52:65:2332:52:1844:-131.018,0,-174.919	0/1:38:22,15:22:784:15:536:-37.1144,0,-59.4243	0/1:94:53,41:53:1895:41:1455:-102.948,0,-142.531	1/1:144:0,144:0:0:144:5167:-465.168,-43.3483,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:84:40,44:40:1432:44:1584:-117.565,0,-103.891	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:74:0,74:0:0:74:2633:-237.216,-22.2762,0	0/1:76:28,48:28:1000:48:1715:-131.757,0,-67.3309	0/1:85:46,39:46:1652:39:1400:-100.712,0,-123.381	0/1:40:15,25:15:540:25:896:-68.9192,0,-36.8953	1/1:45:0,45:0:0:45:1559:-140.595,-13.5464,0	0/1:24:18,6:18:644:6:216:-12.5658,0,-51.0659	1/1:68:0,68:0:0:68:2431:-219.045,-20.47,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:39:17,22:17:612:22:764:-57.3393,0,-43.6733	1/1:47:0,47:0:0:47:1683:-151.757,-14.1484,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:51:22,29:22:775:29:1044:-78.9223,0,-54.7187	0/1:27:15,12:15:540:12:418:-29.8241,0,-40.8087	1/1:141:0,141:0:0:141:5046:-454.284,-42.4452,0	1/1:59:0,59:0:0:59:2094:-188.728,-17.7608,0
chr09	1801248	.	C	T	42624.7	PASS	AB=0.494525;ABP=4.34189;AC=55;AF=0.292553;AN=188;AO=2534;CIGAR=1X;DP=8615;DPB=8615;DPRA=1.0688;EPP=5505.52;EPPR=13205.6;GTI=0;LEN=1;MEANALT=1.01724;MQM=59.526;MQMR=59.9799;NS=94;NUMALT=1;ODDS=0.260085;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90771;QR=217795;RO=6080;RPL=0;RPP=5505.52;RPPR=13205.6;RPR=2534;RUN=1;SAF=2534;SAP=5505.52;SAR=0;SRF=6080;SRP=13205.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:31,21:31:1108:21:747:-51.8997,0,-84.3774	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:292:292,0:292:10423:0:0:0,-87.9008,-937.988	0/0:288:288,0:288:10332:0:0:0,-86.6966,-929.742	0/1:36:21,15:21:756:15:540:-38.0995,0,-57.5301	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/1:90:42,48:42:1500:48:1722:-127.422,0,-108.202	0/1:84:42,42:42:1508:42:1496:-109.648,0,-110.728	0/1:65:37,28:37:1332:28:1004:-71.1047,0,-100.615	0/1:51:25,26:25:900:26:936:-69.1846,0,-65.9685	0/1:127:62,65:62:2224:65:2332:-171.875,0,-162.193	0/1:97:49,48:49:1760:48:1709:-124.886,0,-129.484	0/1:57:22,35:22:788:35:1252:-95.8079,0,-54.0861	0/1:78:32,46:32:1152:46:1648:-125.124,0,-80.5098	0/1:57:25,32:25:896:32:1152:-86.8222,0,-63.8016	0/1:34:12,22:12:432:22:788:-60.9852,0,-28.9862	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:194:108,86:108:3864:86:3083:-219.279,0,-289.556	0/1:162:78,83:78:2796:83:2961:-217.831,0,-203.094	0/1:111:51,60:51:1836:60:2156:-160.862,0,-132.105	0/0:64:62,2:62:2232:2:72:0,-12.4292,-194.307	0/1:59:26,33:26:936:33:1188:-89.4586,0,-66.7987	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/1:175:111,64:111:3965:64:2284:-152.981,0,-304.357	0/1:241:122,119:122:4376:119:4258:-310.655,0,-321.465	0/1:39:16,23:16:568:23:828:-63.0947,0,-39.7117	0/1:273:148,125:148:5304:125:4495:-322.528,0,-395.313	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/1:55:20,35:20:720:35:1260:-97.0992,0,-48.5721	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:234:131,103:131:4700:103:3708:-263.37,0,-352.228	0/0:133:133,0:133:4760:0:0:0,-40.037,-428.558	0/1:57:25,32:25:896:32:1144:-86.1075,0,-63.8016	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:178:101,77:101:3608:77:2742:-193.413,0,-271.343	0/1:45:24,21:24:856:21:756:-54.8163,0,-63.8148	0/1:180:112,68:112:4016:68:2408:-162.774,0,-307.438	0/1:62:27,35:27:968:35:1256:-94.681,0,-68.7735	0/1:51:22,29:22:784:29:1044:-78.8934,0,-55.5314	0/0:134:134,0:134:4784:0:0:0,-40.338,-430.673	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/0:190:189,1:189:6776:1:36:0,-53.5974,-606.313	0/1:117:63,54:63:2236:54:1940:-139.563,0,-166.284	0/1:129:71,58:71:2552:58:2084:-148.454,0,-191.097	0/0:143:143,0:143:5104:0:0:0,-43.0473,-459.505	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.009	0/1:13:7,6:7:252:6:212:-15.509,0,-19.1156	0/1:128:62,66:62:2224:66:2363:-174.374,0,-161.892	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:59:16,43:16:572:43:1544:-121.298,0,-34.0527	0/1:78:38,40:38:1356:40:1440:-106.409,0,-98.8601	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:175:175,0:175:6264:0:0:0,-52.6802,-563.854	0/1:122:81,41:81:2908:41:1468:-95.6834,0,-225.229	0/1:56:27,29:27:972:29:1040:-77.0475,0,-70.9402	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016	0/1:167:88,79:88:3156:79:2814:-203.202,0,-233.993	0/1:104:38,66:38:1364:66:2335:-178.934,0,-91.7536	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/1:54:20,34:20:720:34:1212:-93.1289,0,-48.8732	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:110:47,63:47:1684:63:2260:-170.44,0,-118.734	0/1:97:55,42:55:1972:42:1507:-106.691,0,-148.555	0/1:89:39,50:39:1392:50:1792:-134.749,0,-98.7873	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/0:139:139,0:139:4976:0:0:0,-41.8432,-447.985	0/1:128:70,58:70:2512:58:2080:-148.732,0,-187.8	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:82:80,2:80:2864:2:72:0,-17.8477,-251.161	0/1:161:85,76:85:3048:76:2736:-198.007,0,-225.894	0/1:142:71,71:71:2544:71:2556:-187.432,0,-186.464	0/1:67:30,37:30:1080:37:1332:-99.8765,0,-77.3442	0/0:97:97,0:97:3464:0:0:0,-29.1999,-311.973	0/1:68:26,42:26:932:42:1503:-115.004,0,-63.7288	0/0:136:136,0:136:4864:0:0:0,-40.9401,-437.911	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:60:32,28:32:1152:28:1008:-72.9746,0,-85.9283	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.309	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:87:46,41:46:1644:41:1464:-105.862,0,-122.059	0/1:78:23,55:23:824:55:1964:-153.55,0,-51.003	0/0:189:189,0:189:6772:0:0:0,-56.8947,-609.552	0/0:116:116,0:116:4135:0:0:0,-34.9195,-372.335
chr09	1934481	.	C	A	39340.8	PASS	AB=0.512503;ABP=9.14607;AC=57;AF=0.303191;AN=188;AO=2329;CIGAR=1X;DP=7580;DPB=7580;DPRA=1.20675;EPP=5060.37;EPPR=11394.6;GTI=1;LEN=1;MEANALT=1.03077;MQM=59.9944;MQMR=59.9964;NS=94;NUMALT=1;ODDS=0.915719;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83242;QR=187643;RO=5246;RPL=0;RPP=5060.37;RPPR=11299.2;RPR=2329;RUN=1;SAF=0;SAP=5060.37;SAR=2329;SRF=11;SRP=11299.2;SRR=5235;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:43,20:43:1544:20:703:-44.6286,0,-120.288	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/0:178:178,0:178:6336:0:0:0,-53.5833,-570.333	0/0:171:170,1:170:6093:1:36:0,-47.8779,-544.87	0/1:41:17,24:17:608:24:855:-64.9279,0,-42.7098	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/1:86:36,50:36:1276:50:1779:-134.504,0,-89.2545	0/1:57:30,25:30:1076:25:882:-62.7803,0,-80.2365	0/1:58:31,27:31:1112:27:968:-69.9776,0,-82.9316	0/1:65:26,39:26:928:39:1400:-106.732,0,-64.2713	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.142	0/1:73:42,31:42:1500:31:1107:-77.965,0,-113.319	0/1:108:56,52:56:2008:52:1844:-133.727,0,-148.482	0/1:61:38,23:38:1343:23:828:-56.4813,0,-102.807	0/1:61:22,39:22:792:39:1384:-106.496,0,-53.2428	0/1:31:17,14:17:608:14:500:-36.0042,0,-45.7201	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:137:51,86:51:1828:86:3074:-235.646,0,-123.56	0/1:107:51,56:51:1832:56:2004:-148.423,0,-132.951	0/1:146:56,90:56:2007:90:3211:-245.263,0,-136.952	0/0:118:118,0:118:4212:0:0:0,-35.5215,-379.259	0/1:47:28,19:28:989:19:684:-47.7419,0,-75.1736	0/0:83:81,2:81:2904:2:72:0,-18.1488,-254.759	0/1:211:104,107:104:3736:107:3839:-282.187,0,-272.922	0/1:192:85,107:85:3044:107:3827:-286.829,0,-216.392	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	0/1:210:96,114:96:3428:114:4083:-304.437,0,-245.518	0/0:90:90,0:90:3204:0:0:0,-27.0927,-288.582	0/1:76:35,41:35:1248:41:1468:-109.538,0,-89.7466	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:143:81,60:81:2897:60:2152:-151.142,0,-218.159	0/0:125:125,0:125:4464:0:0:0,-37.6287,-401.929	0/1:64:32,32:32:1143:32:1140:-83.6433,0,-83.9128	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:86:48,38:48:1728:38:1360:-96.812,0,-129.917	0/1:27:16,11:16:561:11:387:-27.0381,0,-42.6893	0/1:142:78,64:78:2804:64:2289:-163.523,0,-209.853	0/1:42:20,22:20:716:22:780:-57.8798,0,-52.1245	0/1:56:27,29:27:955:29:1044:-77.4171,0,-69.4072	0/0:122:122,0:122:4373:0:0:0,-36.7257,-393.741	0/0:133:133,0:133:4758:0:0:0,-40.037,-428.377	0/0:210:208,2:208:7425:2:72:0,-56.3796,-661.46	0/1:77:36,41:36:1288:41:1464:-108.877,0,-93.0443	0/1:113:49,64:49:1749:64:2266:-170.179,0,-123.676	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:11:4,7:4:144:7:244:-18.9881,0,-10.0023	0/0:164:164,0:164:5863:0:0:0,-49.3689,-527.782	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:153:45,108:45:1616:108:3863:-301.806,0,-99.6724	0/1:32:18,14:18:644:14:500:-35.7032,0,-48.6576	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:66:37,29:37:1305:29:1044:-74.4068,0,-97.8814	0/1:110:49,61:49:1756:61:2164:-161.911,0,-125.211	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:151:151,0:151:5365:0:0:0,-45.4555,-482.983	0/1:130:63,67:63:2256:67:2408:-177.84,0,-164.169	0/1:67:49,18:49:1751:18:640:-37.7603,0,-137.704	0/0:88:87,1:87:3124:1:36:0,-22.8924,-277.787	0/1:71:43,28:43:1544:28:1008:-69.6632,0,-117.88	0/1:139:34,105:34:1224:105:3772:-297.835,0,-68.6239	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:45:26,19:26:928:19:665:-46.6273,0,-70.2919	0/1:20:12,8:12:424:8:288:-20.2468,0,-32.4758	0/1:144:60,84:60:2156:84:3011:-227.872,0,-150.959	0/1:65:37,28:37:1332:28:1004:-71.1089,0,-100.615	0/1:88:50,38:50:1788:38:1360:-96.21,0,-134.712	0/0:131:131,0:131:4687:0:0:0,-39.4349,-421.99	0/0:179:177,2:177:6347:2:68:0,-47.4267,-564.861	0/1:56:31,25:31:1116:25:891:-63.6511,0,-83.894	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082	0/1:142:82,60:82:2935:60:2152:-151.201,0,-221.637	0/1:148:81,67:81:2916:67:2399:-171.614,0,-218.122	0/1:43:22,21:22:773:21:756:-55.4229,0,-56.939	0/0:99:98,1:98:3498:1:36:0,-26.2037,-311.432	0/1:40:18,22:18:644:22:775:-58.0294,0,-46.2494	0/0:95:92,3:92:3291:3:104:0,-18.895,-286.706	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:77:37,40:37:1324:40:1436:-106.358,0,-96.2828	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.35	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.071	0/1:150:79,71:79:2828:71:2536:-183.337,0,-209.604	0/1:57:25,32:25:896:32:1140:-85.7505,0,-63.8016	0/0:92:91,0:91:3268:0:0:0,-27.3937,-294.019	0/0:90:89,1:89:3192:1:36:0,-23.4944,-283.905
chr09	1934527	.	G	A	39331.4	PASS	AB=0.508374;ABP=5.77417;AC=57;AF=0.303191;AN=188;AO=2319;CIGAR=1X;DP=7615;DPB=7615;DPRA=1.15229;EPP=5038.65;EPPR=11498.8;GTI=1;LEN=1;MEANALT=1.03125;MQM=59.9961;MQMR=59.9964;NS=94;NUMALT=1;ODDS=1.431;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83180;QR=189812;RO=5294;RPL=2319;RPP=5038.65;RPPR=11498.8;RPR=0;RUN=1;SAF=0;SAP=5038.65;SAR=2319;SRF=0;SRP=11498.8;SRR=5294;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:43,19:43:1544:19:676:-42.5041,0,-120.589	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:185:185,0:185:6620:0:0:0,-55.6905,-595.88	0/0:177:177,0:177:6320:0:0:0,-53.2823,-568.894	0/1:41:17,24:17:612:24:860:-65.3796,0,-43.0712	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:87:36,51:36:1276:51:1832:-138.971,0,-88.9535	0/1:55:30,25:30:1076:25:892:-64.043,0,-80.5962	0/1:55:28,27:28:1008:27:968:-70.8807,0,-74.4797	0/1:63:25,38:25:900:38:1364:-104.096,0,-62.3561	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:74:43,31:43:1532:31:1116:-78.4755,0,-115.897	0/1:109:58,51:58:2080:51:1817:-130.997,0,-154.658	0/1:60:37,23:37:1332:23:824:-56.4215,0,-102.121	0/1:61:23,38:23:824:38:1368:-105.058,0,-56.1205	0/1:32:18,14:18:644:14:504:-36.0651,0,-48.6576	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:135:50,85:50:1796:85:3052:-234.27,0,-121.283	0/1:109:53,56:53:1904:56:2008:-148.181,0,-138.825	0/1:147:56,91:56:2012:91:3268:-250.088,0,-137.102	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.821	0/1:47:27,20:27:968:20:716:-50.6193,0,-73.289	0/0:84:83,1:83:2976:1:36:0,-21.6882,-264.474	0/1:211:109,102:109:3901:102:3668:-266.805,0,-287.765	0/1:194:86,107:86:3088:107:3836:-286.977,0,-219.689	0/1:28:17,11:17:612:11:396:-27.5539,0,-46.9846	0/1:211:95,116:95:3408:116:4168:-311.783,0,-243.417	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:79:37,42:37:1328:42:1504:-111.873,0,-96.0409	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:146:84,62:84:3008:62:2228:-156.833,0,-227.001	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.607	0/1:63:33,30:33:1188:30:1076:-78.188,0,-88.2637	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:87:47,40:47:1676:40:1436:-103.348,0,-124.938	0/1:26:16,10:16:572:10:356:-24.5545,0,-43.9866	0/1:149:82,66:82:2944:66:2360:-167.746,0,-220.281	0/1:41:20,21:20:720:21:752:-55.664,0,-52.7865	0/1:54:27,27:27:968:27:968:-71.1817,0,-71.1817	0/0:115:114,1:114:4073:1:36:0,-31.0202,-363.157	0/0:136:136,0:136:4864:0:0:0,-40.9401,-437.914	0/0:209:207,2:207:7412:2:72:0,-56.0785,-660.289	0/1:80:38,42:38:1368:42:1508:-111.932,0,-99.3384	0/1:110:48,62:48:1728:62:2220:-166.951,0,-122.692	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:160:160,0:160:5740:0:0:0,-48.1648,-516.715	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/1:152:48,104:48:1724:104:3712:-288.525,0,-109.689	0/1:33:19,14:19:684:14:500:-35.4022,0,-51.9563	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:66:37,29:37:1328:29:1044:-74.4068,0,-99.9543	0/1:109:48,61:48:1728:61:2192:-164.733,0,-122.993	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:152:152,0:152:5460:0:0:0,-45.7566,-491.526	0/1:131:62,69:62:2224:69:2476:-183.656,0,-160.989	0/1:67:49,18:49:1756:18:643:-38.0312,0,-138.155	0/0:90:89,1:89:3196:1:36:0,-23.4944,-284.264	0/1:72:43,29:43:1548:29:1040:-72.2402,0,-117.939	0/1:138:34,104:34:1216:104:3736:-294.897,0,-68.2044	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:43:25,18:25:900:18:644:-45.3463,0,-68.3767	0/1:22:12,10:12:432:10:348:-25.0325,0,-32.5985	0/1:144:62,82:62:2217:82:2940:-221.486,0,-156.444	0/1:66:39,27:39:1400:27:968:-67.5694,0,-106.431	0/1:91:53,38:53:1904:38:1360:-95.3069,0,-144.244	0/0:131:131,0:131:4700:0:0:0,-39.4349,-423.159	0/0:180:177,3:177:6348:3:108:0,-44.1102,-561.334	0/1:57:31,26:31:1112:26:932:-67.0402,0,-83.2326	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/1:143:83,60:83:2976:60:2160:-151.619,0,-225.025	0/1:151:82,69:82:2936:69:2476:-177.638,0,-219.019	0/1:45:24,21:24:860:21:756:-54.8209,0,-64.1693	0/0:101:100,1:100:3596:1:36:0,-26.8058,-320.247	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6107	0/0:96:93,3:93:3317:3:108:0,-18.8237,-288.672	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:77:37,40:37:1324:40:1440:-106.718,0,-96.2828	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.071	0/1:148:79,69:79:2840:69:2484:-179.26,0,-211.285	0/1:57:25,32:25:896:32:1144:-86.1108,0,-63.8016	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503
chr09	1941762	.	G	A	69276.7	PASS	AB=0.461431;ABP=49.0741;AC=130;AF=0.691489;AN=188;AO=3574;CIGAR=1X;DP=5497;DPB=5497;DPRA=59.0968;EPP=7763.85;EPPR=4165.73;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9301;MQMR=59.95;NS=94;NUMALT=1;ODDS=0.555163;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125635;QR=68611;RO=1921;RPL=3574;RPP=7763.85;RPPR=4174.41;RPR=0;RUN=1;SAF=3574;SAP=7763.85;SAR=0;SRF=1920;SRP=4165.73;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2786	1/1:43:0,43:0:0:43:1524:-137.453,-12.9443,0	1/1:49:0,49:0:0:49:1736:-156.525,-14.7505,0	1/1:146:0,146:0:0:146:5136:-462.393,-43.9504,0	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:77:0,77:0:0:77:2674:-240.906,-23.1793,0	0/1:73:46,27:46:1644:27:944:-63.2989,0,-126.269	0/1:47:18,29:18:644:29:1028:-78.6765,0,-44.1422	0/1:77:41,36:41:1472:36:1244:-89.0796,0,-109.597	0/1:49:31,18:31:1099:18:636:-42.8176,0,-84.469	1/1:47:0,47:0:0:47:1655:-149.229,-14.1484,0	0/1:52:29,23:29:1019:23:811:-57.6564,0,-76.3677	0/1:87:45,42:45:1604:42:1484:-107.665,0,-118.461	0/1:18:9,9:9:320:9:316:-23.3603,0,-23.7238	0/1:51:27,24:27:968:24:839:-60.4747,0,-72.0848	0/1:34:17,17:17:600:17:595:-43.6417,0,-44.0942	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:74:36,38:36:1288:38:1317:-96.5511,0,-93.9474	0/1:184:100,84:100:3575:84:2984:-213.395,0,-266.568	0/1:22:16,6:16:572:6:212:-12.8021,0,-45.1908	1/1:56:0,56:0:0:56:1991:-179.461,-16.8577,0	0/1:31:18,13:18:648:13:456:-32.0413,0,-49.2572	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	0/1:204:109,94:109:3905:94:3292:-235.034,0,-290.155	0/1:120:67,52:67:2404:52:1816:-127.578,0,-180.473	0/1:15:10,5:10:351:5:176:-11.6696,0,-27.4112	0/1:180:103,77:103:3691:77:2726:-191.385,0,-278.189	1/1:76:0,76:0:0:76:2688:-242.167,-22.8783,0	0/1:69:36,33:36:1283:33:1172:-85.0164,0,-95.0016	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	1/1:24:0,24:0:0:24:835:-75.4298,-7.22472,0	0/1:109:52,57:52:1856:57:2008:-148.179,0,-134.507	1/1:82:0,82:0:0:82:2887:-260.069,-24.6845,0	0/1:40:19,21:19:676:21:721:-53.1637,0,-49.1268	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:71:36,35:36:1292:35:1208:-87.6469,0,-95.2	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:62:37,25:37:1324:25:884:-61.2127,0,-100.798	0/1:33:19,14:19:684:14:483:-33.8633,0,-51.9563	0/1:27:19,8:19:680:8:284:-17.7755,0,-53.4014	1/1:63:0,63:0:0:63:2228:-200.785,-18.9649,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	1/1:85:0,85:0:0:85:2971:-267.518,-25.5876,0	0/1:33:10,23:10:356:23:804:-62.7453,0,-22.4473	0/1:134:68,66:68:2431:66:2324:-168.996,0,-178.707	1/1:58:0,58:0:0:58:2036:-183.512,-17.4597,0	0/1:15:4,11:4:144:11:388:-30.7419,0,-8.79817	1/1:67:0,67:0:0:67:2341:-210.946,-20.169,0	1/1:58:0,58:0:0:58:2044:-184.232,-17.4597,0	0/1:14:8,6:8:288:6:200:-13.7884,0,-22.053	0/1:87:49,38:49:1740:38:1344:-95.0705,0,-130.695	0/1:11:5,6:5:180:6:204:-15.382,0,-13.2407	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	0/1:73:45,28:45:1616:28:988:-67.2587,0,-123.755	0/1:89:39,50:39:1400:50:1746:-130.627,0,-99.5075	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:161:1,160:1:36:160:5605:-500.955,-44.8676,0	0/1:123:80,43:80:2829:43:1531:-101.056,0,-217.82	0/1:60:28,32:28:1004:32:1130:-83.9464,0,-72.6141	1/1:38:0,38:0:0:38:1340:-120.9,-11.4391,0	0/1:131:73,58:73:2607:58:2051:-145.426,0,-195.443	0/1:104:61,43:61:2158:43:1520:-105.786,0,-163.171	1/1:27:0,27:0:0:27:940:-84.9114,-8.12781,0	1/1:30:0,30:0:0:30:1035:-93.458,-9.0309,0	0/1:46:31,15:31:1104:15:524:-33.6423,0,-85.8233	0/1:32:16,16:16:576:16:560:-41.0958,0,-42.542	0/1:76:40,36:40:1436:36:1257:-90.551,0,-106.659	0/1:66:22,44:22:777:44:1548:-119.744,0,-50.3824	0/1:173:88,85:88:3146:85:3003:-218.417,0,-231.286	1/1:118:0,118:0:0:118:4134:-372.25,-35.5215,0	1/1:37:0,37:0:0:37:1295:-116.85,-11.1381,0	0/1:60:27,33:27:964:33:1129:-83.848,0,-69.015	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	1/1:65:0,65:0:0:65:2257:-203.394,-19.567,0	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.1898	0/1:132:73,59:73:2604:59:2073:-147.085,0,-194.873	0/1:49:22,27:22:784:27:955:-71.5144,0,-56.1334	1/1:49:0,49:0:0:49:1735:-156.434,-14.7505,0	0/1:33:17,16:17:604:16:556:-40.4332,0,-44.7566	1/1:70:0,70:0:0:70:2476:-223.095,-21.0721,0	1/1:16:0,16:0:0:16:572:-51.8052,-4.81648,0	0/1:47:20,27:20:712:27:952:-71.8468,0,-50.2582	1/1:38:0,38:0:0:38:1329:-119.905,-11.4391,0	1/1:35:0,35:0:0:35:1228:-110.824,-10.5361,0	0/1:110:61,49:61:2176:49:1723:-122.239,0,-162.993	0/1:39:29,10:29:1036:10:356:-20.6411,0,-81.8137	1/1:122:0,122:0:0:122:4273:-384.752,-36.7257,0	1/1:54:1,53:1:36:53:1872:-165.16,-12.6573,0
chr09	1941767	.	A	T	32887.7	PASS	AB=0.531;ABP=33.3026;AC=58;AF=0.308511;AN=188;AO=1930;CIGAR=1X;DP=5605;DPB=5605;DPRA=1.30245;EPP=4185.27;EPPR=7974.49;GTI=1;LEN=1;MEANALT=1.0678;MQM=59.9477;MQMR=59.933;NS=94;NUMALT=1;ODDS=0.0316093;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68925;QR=131641;RO=3671;RPL=1930;RPP=4193.95;RPPR=7974.49;RPR=0;RUN=1;SAF=1929;SAP=4185.27;SAR=1;SRF=3671;SRP=7974.49;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:4,14:4:144:14:504:-40.2786,0,-7.89508	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/0:146:146,0:146:5252:0:0:0,-43.9504,-472.814	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:8:4,4:4:144:4:131:-9.70523,0,-10.9054	0/0:81:81,0:81:2916:0:0:0,-24.3834,-262.674	0/1:74:29,45:29:1044:45:1603:-122.279,0,-71.9986	0/1:49:32,17:32:1137:17:608:-40.3016,0,-87.8783	0/1:77:36,41:36:1296:41:1476:-109.957,0,-93.7646	0/1:49:16,33:16:576:33:1188:-92.4781,0,-37.4245	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.722	0/1:53:23,30:23:828:30:1076:-81.1983,0,-58.8895	0/1:88:44,44:44:1584:44:1570:-115.101,0,-116.361	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:52:24,28:24:864:28:1000:-74.6618,0,-62.429	0/1:35:16,18:16:572:18:644:-47.6959,0,-41.2187	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:77:41,36:41:1464:36:1267:-91.1507,0,-108.877	0/1:189:86,103:86:3080:103:3640:-270.909,0,-220.524	0/1:22:6,16:6:216:16:576:-45.5523,0,-13.1679	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.828	0/1:30:13,17:13:468:17:612:-46.3649,0,-33.4287	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:210:99,111:99:3526:111:3975:-294.705,0,-254.331	0/1:120:52,68:52:1864:68:2420:-181.93,0,-131.916	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:187:83,103:83:2965:103:3691:-276.062,0,-210.714	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:72:35,37:35:1260:37:1332:-98.5082,0,-92.0313	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:109:57,52:57:2044:52:1863:-135.136,0,-151.42	0/0:83:83,0:83:2973:0:0:0,-24.9855,-267.801	0/1:41:21,20:21:752:20:720:-52.7865,0,-55.6594	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:73:37,36:37:1324:36:1296:-94.9581,0,-97.4869	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.2918	0/1:63:26,37:26:936:37:1332:-101.217,0,-65.59	0/1:33:14,19:14:500:19:684:-51.9563,0,-35.4022	0/1:29:10,19:10:360:19:680:-52.7993,0,-24.0144	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.549	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:87:87,0:87:3120:0:0:0,-26.1896,-280.399	0/1:34:24,10:24:864:10:360:-22.5093,0,-67.8475	0/1:136:66,70:66:2372:70:2503:-184.582,0,-172.711	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:15:11,4:11:396:4:140:-8.42913,0,-31.4673	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.211	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/1:14:7,7:7:252:7:252:-18.8145,0,-17.6082	0/1:90:41,49:41:1472:49:1752:-130.871,0,-105.683	0/1:11:6,5:6:216:5:171:-12.4141,0,-16.4792	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:72:28,44:28:1008:44:1571:-120.007,0,-69.3622	0/1:89:50,39:50:1788:39:1400:-99.5075,0,-134.409	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:166:165,1:165:5913:1:36:0,-46.3727,-528.608	0/1:121:43,78:43:1544:78:2771:-213.201,0,-102.828	0/1:60:33,27:33:1169:27:968:-69.3756,0,-87.4535	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:134:60,73:60:2147:73:2628:-196.517,0,-153.241	0/1:107:45,62:45:1616:62:2217:-167.577,0,-113.52	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/1:47:16,31:16:576:31:1098:-84.9802,0,-38.0266	0/1:32:16,16:16:576:16:572:-42.1805,0,-42.542	0/1:82:41,41:41:1472:41:1454:-106.47,0,-108.087	0/1:68:46,22:46:1652:22:788:-50.7748,0,-128.498	0/1:174:87,87:87:3132:87:3097:-226.578,0,-229.717	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/1:60:33,27:33:1188:27:960:-68.6539,0,-89.1668	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:24:11,13:11:396:13:464:-34.8276,0,-28.758	0/1:137:63,74:63:2268:74:2621:-194.882,0,-163.141	0/1:48:27,21:27:968:21:752:-53.5568,0,-72.9879	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9981	0/1:48:28,20:28:1008:20:716:-50.3183,0,-76.5869	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.175	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:112:50,62:50:1796:62:2202:-164.729,0,-128.202	0/1:40:9,30:9:320:30:1064:-84.0104,0,-17.0787	0/0:127:127,0:127:4549:0:0:0,-38.2308,-409.57	0/0:55:54,1:54:1925:1:36:0,-12.9584,-169.925
chr09	2082670	.	CTACA	GTACG,CTACG	166299	PASS	AB=0.483673,0.512486;ABP=15.0648,10.0595;AC=127,59;AF=0.682796,0.317204;AN=186;AO=5319,2689;CIGAR=1X3M1X,4M1X;DP=8037;DPB=8037.2;DPRA=17.4609,1.55235;EPP=11553.1,5842.1;EPPR=5.18177;GTI=1;LEN=5,1;MEANALT=1.95652,2.29032;MQM=53.5516,59.9509;MQMR=60;NS=93;NUMALT=2;ODDS=2.21681;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=188242,96148;QR=36;RO=1;RPL=5319,2689;RPP=11553.1,5842.1;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=11553.1,5842.1;SAR=5319,2689;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:34:0,9,25:0:0:9,25:316,900:-99.3673,-73.7953,-71.086,-25.924,0,-18.3983	1/1:51:0,51,0:0:0:51,0:1802,0:-161.45,-15.3525,0,-161.45,-15.3525,-161.45	1/1:93:0,93,0:0:0:93,0:3303,0:-295.946,-27.9958,0,-295.946,-27.9958,-295.946	1/1:195:0,193,2:0:0:193,2:6800,72:-609.049,-58.0988,0,-603.175,-51.8641,-602.572	1/2:32:0,11,21:0:0:11,21:394,752:-93.7681,-61.6846,-58.3733,-32.4411,0,-26.1195	1/2:27:0,16,11:0:0:16,11:567,392:-78.2855,-32.3087,-27.4922,-46.3316,0,-43.0203	1/1:156:0,155,0:0:0:155,0:5495,0:-492.903,-46.6597,0,-492.903,-46.6597,-492.903	1/2:82:0,30,52:0:0:30,52:1051,1872:-238.265,-153.101,-144.07,-85.517,0,-69.8634	1/2:95:1,47,47:1:36:47,47:1661,1684:-268.561,-134.401,-123.19,-131.518,0,-120.308	1/2:111:0,41,70:0:0:41,70:1453,2508:-322.367,-204.9,-192.558,-117.821,0,-96.7487	1/2:41:0,24,17:0:0:24,17:847,612:-119.162,-50.2959,-43.0712,-69.2232,0,-64.1057	1/1:100:0,100,0:0:0:100,0:3557,0:-318.851,-30.103,0,-318.851,-30.103,-318.851	1/2:84:0,38,46:0:0:38,46:1352,1644:-243.914,-134.065,-122.625,-109.87,0,-96.0222	1/2:53:0,23,30:0:0:23,30:804,1068:-152.69,-87.3979,-80.4742,-65.6435,0,-56.6126	1/2:90:0,43,45:0:0:43,45:1532,1620:-256.948,-132.186,-119.242,-124.762,0,-111.215	1/2:67:0,33,34:0:0:33,34:1175,1216:-195.051,-99.5115,-89.5776,-95.8957,0,-85.6607	1/2:32:0,18,14:0:0:18,14:631,504:-92.4412,-41.4755,-36.0569,-51.3204,0,-47.106	1/1:30:0,30,0:0:0:30,0:1061,0:-95.0518,-9.0309,0,-95.0518,-9.0309,-95.0518	1/1:32:0,32,0:0:0:32,0:1107,0:-99.0774,-9.63296,0,-99.0774,-9.63296,-99.0774	1/2:136:0,73,62:0:0:73,62:2597,2220:-392.427,-181.041,-159.066,-211.383,0,-192.719	1/2:182:0,88,94:0:0:88,94:3122,3356:-527.442,-273.956,-247.465,-253.841,0,-225.544	1/2:70:0,26,44:0:0:26,44:910,1572:-202.084,-128.526,-120.699,-73.9091,0,-60.6638	1/1:114:0,113,1:0:0:113,1:3997,32:-358.933,-34.0164,0,-356.355,-31.1181,-356.054	1/2:96:0,56,39:0:0:56,39:2004,1400:-277.325,-114.199,-97.3415,-163.124,0,-151.384	1/1:43:0,43,0:0:0:43,0:1514,0:-136.011,-12.9443,0,-136.011,-12.9443,-136.011	1/2:229:0,114,115:0:0:114,115:4042,4111:-664.066,-335.556,-301.239,-328.865,0,-294.246	1/2:220:0,109,111:0:0:109,111:3836,3976:-635.158,-324.614,-291.801,-310.899,0,-277.485	1/2:37:0,18,19:0:0:18,19:638,667:-105.619,-54.6351,-49.2165,-51.3339,0,-45.6143	1/2:233:0,130,103:0:0:130,103:4617,3700:-677.501,-302.195,-263.061,-375.663,0,-344.657	1/2:106:0,51,55:0:0:51,55:1822,1953:-306.776,-159.483,-144.13,-147.648,0,-131.092	1/2:118:0,54,62:0:0:54,62:1884,2212:-333.164,-180.329,-164.073,-152.835,0,-134.171	1/1:3:0,3,0:0:0:3,0:108,0:-10.0609,-0.90309,0,-10.0609,-0.90309,-10.0609	1/1:6:0,6,0:0:0:6,0:212,0:-19.4006,-1.80618,0,-19.4006,-1.80618,-19.4006	.:.:.:.:.:.:.:.	2/2:10:0,1,9:0:0:1,9:22,324:-29.2719,-27.6073,-27.3063,-2.70927,-0.810731,0	1/1:3:0,3,0:0:0:3,0:108,0:-10.0498,-0.90309,0,-10.0498,-0.90309,-10.0498	1/2:223:0,118,104:0:0:118,104:4156,3727:-641.782,-303.969,-268.447,-337.815,0,-306.508	1/1:54:0,54,0:0:0:54,0:1899,0:-170.648,-16.2556,0,-170.648,-16.2556,-170.648	1/2:50:0,25,25:0:0:25,25:885,900:-145.529,-73.7953,-66.2695,-72.0899,0,-64.5641	1/2:5:0,1,4:0:0:1,4:31,144:-14.5865,-12.1095,-11.8085,-2.7968,0,-1.59268	1/2:106:0,60,46:0:0:60,46:2133,1640:-305.282,-134.041,-115.979,-171.595,0,-157.748	1/2:28:0,11,17:0:0:11,17:394,608:-82.0135,-49.9299,-46.6186,-32.4411,0,-27.3236	1/2:80:0,34,46:0:0:34,46:1204,1632:-230.437,-133.321,-123.086,-97.4681,0,-83.6207	1/2:60:0,29,29:0:0:29,29:1034,1044:-169.143,-85.1898,-76.4599,-83.9558,0,-75.2259	1/2:63:0,36,27:0:0:36,27:1281,963:-183.107,-78.8581,-68.021,-104.604,0,-96.4766	1/1:93:0,92,0:0:0:92,0:3222,0:-289.58,-27.6948,0,-289.58,-27.6948,-289.58	1/1:50:0,50,0:0:0:50,0:1763,0:-158.292,-15.0515,0,-158.292,-15.0515,-158.292	1/1:119:0,118,0:0:0:118,0:4172,0:-374.746,-35.5215,0,-374.746,-35.5215,-374.746	1/2:90:0,36,54:0:0:36,54:1268,1936:-260.856,-158.259,-147.422,-102.95,0,-86.6948	1/2:113:0,49,63:0:0:49,63:1747,2248:-325.551,-183.259,-168.509,-142.288,0,-123.323	1/1:128:0,127,1:0:0:127,1:4525,36:-405.493,-38.2308,0,-402.556,-34.9336,-402.255	1/2:6:0,3,3:0:0:3,3:108,108:-17.9772,-9.17208,-8.26899,-9.16481,0,-8.26172	1/1:86:0,86,0:0:0:86,0:3068,0:-273.764,-25.8886,0,-273.764,-25.8886,-273.764	1/1:57:0,57,0:0:0:57,0:2035,0:-183.241,-17.1587,0,-183.241,-17.1587,-183.241	1/2:15:0,7,8:0:0:7,8:241,284:-43.0176,-23.4942,-21.387,-19.8722,0,-17.464	1/2:199:0,104,94:0:0:104,94:3657,3352:-568.675,-273.241,-241.934,-295.427,0,-267.13	1/2:41:0,15,26:0:0:15,26:522,936:-119.06,-76.7327,-72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chr09	2082682	.	C	T	105963	PASS	AB=0.485703;ABP=12.1996;AC=128;AF=0.688172;AN=186;AO=5306;CIGAR=1X;DP=7979;DPB=7979;DPRA=17.3348;EPP=11524.8;EPPR=5798.67;GTI=2;LEN=1;MEANALT=1.04348;MQM=53.5324;MQMR=59.9513;NS=93;NUMALT=1;ODDS=0.856826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190033;QR=94717;RO=2669;RPL=5306;RPP=11524.8;RPPR=5798.67;RPR=0;RUN=1;SAF=0;SAP=11524.8;SAR=5306;SRF=0;SRP=5798.67;SRR=2669;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:25,8:25:896:8:288:-15.8096,0,-70.6675	1/1:51:0,51:0:0:51:1828:-163.603,-15.3525,0	1/1:91:0,91:0:0:91:3268:-292.629,-27.3937,0	1/1:193:2,191:2:72:191:6840:-605.91,-51.2621,0	0/1:32:21,11:21:726:11:392:-25.9389,0,-56.023	0/1:27:11,16:11:381:16:576:-43.6999,0,-26.4928	1/1:155:0,155:0:0:155:5548:-497.884,-46.6597,0	0/1:81:52,29:52:1808:29:1025:-67.7651,0,-138.61	0/1:93:46,47:46:1633:47:1680:-122.627,0,-119.261	0/1:110:69,41:69:2438:41:1468:-98.2132,0,-186.559	0/1:41:17,24:17:608:24:864:-65.6346,0,-42.7098	1/1:100:0,100:0:0:100:3596:-322.29,-30.103,0	0/1:81:44,37:44:1561:37:1332:-95.4438,0,-116.396	0/1:53:30,23:30:1064:23:828:-58.7181,0,-80.1089	0/1:90:45,45:45:1601:45:1616:-118.482,0,-117.285	0/1:67:34,33:34:1224:33:1188:-86.6845,0,-90.298	0/1:30:13,17:13:468:17:612:-45.8779,0,-33.4287	1/1:30:0,30:0:0:30:1046:-93.4329,-9.0309,0	1/1:32:0,32:0:0:32:1152:-103.075,-9.63296,0	0/1:138:65,73:65:2332:73:2616:-193.811,0,-168.597	0/1:178:90,88:90:3179:88:3160:-230.13,0,-232.748	0/1:70:44,26:44:1569:26:913:-60.6826,0,-120.428	1/1:113:1,112:1:36:112:4009:-356.663,-30.4181,0	0/1:97:41,56:41:1457:56:2016:-152.211,0,-102.224	1/1:43:0,43:0:0:43:1548:-139.029,-12.9443,0	0/1:231:117,114:117:4162:114:4070:-296.045,0,-305.206	0/1:218:109,109:109:3901:109:3893:-282.454,0,-285.655	0/1:36:18,18:18:648:18:648:-46.7044,0,-47.8148	0/1:231:102,128:102:3641:128:4596:-343.327,0,-258.297	0/1:105:53,51:53:1904:51:1836:-132.479,0,-139.971	0/1:118:62,56:62:2201:56:2004:-144.296,0,-162.832	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7624,-1.80618,0	.:.:.:.:.:.:.:.	0/1:10:9,1:9:320:1:36:-0.578929,0,-26.1321	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	0/1:222:103,119:103:3651:119:4257:-315.818,0,-261.959	1/1:54:0,54:0:0:54:1940:-173.933,-16.2556,0	0/1:50:25,25:25:885:25:896:-65.5272,0,-64.915	0/1:5:4,1:4:144:1:32:-1.69212,0,-11.8085	0/1:104:46,58:46:1644:58:2073:-152.951,0,-116.941	0/1:27:16,11:16:572:11:396:-27.8039,0,-43.681	0/1:79:45,34:45:1518:34:1216:-85.0664,0,-113.118	0/1:60:29,31:29:1040:31:1112:-81.8653,0,-75.8526	0/1:62:27,35:27:949:35:1256:-94.5605,0,-67.0589	1/1:93:0,93:0:0:93:3332:-299.586,-27.9958,0	1/1:49:0,49:0:0:49:1752:-157.288,-14.7505,0	1/1:118:0,118:0:0:118:4232:-380.325,-35.5215,0	0/1:87:52,35:52:1838:35:1245:-85.4934,0,-139.505	0/1:114:64,50:64:2258:50:1788:-126.759,0,-169.163	1/1:127:1,126:1:36:126:4520:-401.377,-34.6325,0	0/1:6:3,3:3:108:3:108:-8.26172,0,-8.26899	1/1:86:0,86:0:0:86:3077:-274.806,-25.8886,0	1/1:57:0,57:0:0:57:2044:-184.047,-17.1587,0	0/1:14:7,7:7:248:7:252:-18.7566,0,-18.4474	0/1:198:95,103:95:3348:103:3696:-270.162,0,-241.74	0/1:41:26,15:26:936:15:536:-36.1121,0,-72.2172	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:12:0,12:0:0:12:432:-39.1808,-3.61236,0	0/1:81:48,33:48:1709:33:1188:-82.4148,0,-129.71	0/1:110:58,52:58:2057:52:1864:-133.537,0,-152.286	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	1/1:220:1,219:1:36:219:7833:-699.033,-62.6283,0	0/1:169:86,83:86:3073:83:2961:-215.212,0,-225.923	0/1:41:28,13:28:1008:13:468:-29.5632,0,-78.6941	1/1:51:0,51:0:0:51:1820:-163.077,-15.3525,0	0/1:175:83,92:83:2961:92:3277:-240.833,0,-214.042	0/1:126:77,49:77:2722:49:1764:-120.991,0,-207.292	1/1:35:0,35:0:0:35:1256:-112.525,-10.5361,0	1/1:52:0,52:0:0:52:1830:-163.887,-15.6536,0	0/1:47:24,23:24:860:23:824:-59.4603,0,-63.5734	0/1:25:12,13:12:428:13:468:-34.901,0,-31.3331	0/1:144:79,64:79:2791:64:2292:-161.466,0,-208.02	0/1:132:61,71:61:2166:71:2517:-185.59,0,-155.445	0/1:107:40,67:40:1372:67:2408:-183.579,0,-91.5584	1/1:237:0,237:0:0:237:8497:-763.253,-71.3441,0	1/1:45:0,45:0:0:45:1620:-144.957,-13.5464,0	0/1:93:49,44:49:1749:44:1584:-114.28,0,-129.683	1/1:7:0,7:0:0:7:252:-22.9711,-2.10721,0	1/1:93:0,93:0:0:93:3317:-296.261,-27.9958,0	0/1:102:54,48:54:1936:48:1720:-123.765,0,-143.811	0/1:237:108,129:108:3785:129:4612:-342,0,-269.503	0/1:49:26,23:26:932:23:828:-60.0168,0,-69.4484	1/1:61:0,61:0:0:61:2192:-197.105,-18.3628,0	0/1:51:23,28:23:828:28:1008:-75.2909,0,-59.4916	1/1:124:0,124:0:0:124:4460:-400.954,-37.3277,0	1/1:35:0,35:0:0:35:1260:-113.086,-10.5361,0	0/1:75:37,38:37:1332:38:1358:-98.3379,0,-97.6051	1/1:73:0,73:0:0:73:2609:-232.328,-21.9752,0	1/1:26:0,26:0:0:26:932:-83.831,-7.82678,0	0/1:79:39,40:39:1381:40:1436:-105.113,0,-100.786	0/1:93:67,26:67:2385:26:936:-56.5004,0,-186.91	1/1:199:1,198:1:21:198:7074:-631.877,-57.805,0	1/1:123:0,123:0:0:123:4416:-396.468,-37.0267,0
chr09	2111306	.	C	T	111921	PASS	AB=0.582622;ABP=1107.1;AC=92;AF=0.489362;AN=188;AO=10854;CIGAR=1X;DP=18659;DPB=18659;DPRA=0;EPP=23572.2;EPPR=16609.8;GTI=2;LEN=1;MEANALT=1.09574;MQM=30.422;MQMR=44.9004;NS=94;NUMALT=1;ODDS=90.3531;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=388098;QR=278502;RO=7795;RPL=0;RPP=23572.2;RPPR=16609.8;RPR=10854;RUN=1;SAF=10854;SAP=23572.2;SAR=0;SRF=7795;SRP=16929.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:13,29:13:460:29:1040:-62.7008,0,-27.8763	0/1:141:63,78:63:2248:78:2789:-149.771,0,-153.599	0/1:146:65,81:65:2336:81:2885:-144.26,0,-157.941	0/1:295:114,181:114:4068:181:6486:-404.115,0,-273.559	0/1:135:54,81:54:1928:81:2904:-143.207,0,-131.271	0/1:93:38,55:38:1360:55:1960:-69.9093,0,-90.4034	0/1:236:86,150:86:3072:150:5358:-265.185,0,-202.685	0/1:238:87,151:87:3124:151:5385:-296.691,0,-201.025	0/1:139:73,66:73:2600:66:2360:-73.9364,0,-185.106	0/1:249:104,145:104:3708:145:5173:-350.503,0,-255.28	0/1:215:112,103:112:4002:103:3674:-165.242,0,-291.12	0/1:227:103,124:103:3668:124:4444:-147.267,0,-248.818	0/1:163:89,73:89:3164:73:2612:-124.056,0,-226.66	0/1:295:123,172:123:4373:172:6155:-386.359,0,-299.623	0/1:150:69,81:69:2455:81:2904:-171.933,0,-173.697	0/1:141:72,69:72:2576:69:2476:-108.095,0,-186.648	0/1:184:92,92:92:3270:92:3300:-103.957,0,-228.543	0/1:116:64,52:64:2287:52:1868:-55.808,0,-162.557	0/1:231:160,71:160:5681:71:2536:-114.271,0,-424.679	0/1:277:101,176:101:3581:176:6281:-409.699,0,-234.589	0/1:342:119,223:119:4264:223:7969:-393.932,0,-274.529	0/1:188:69,118:69:2484:118:4224:-275.701,0,-164.439	0/1:98:37,61:37:1332:61:2184:-108.806,0,-89.3927	0/1:212:97,115:97:3455:115:4124:-246.116,0,-244.074	0/1:112:40,72:40:1436:72:2565:-143.957,0,-94.1305	0/1:533:198,335:198:7080:335:11943:-737.433,0,-468.63	0/1:237:121,116:121:4324:116:4160:-182.607,0,-311.217	0/1:65:23,42:23:807:42:1504:-73.5588,0,-52.2091	0/1:446:173,270:173:6192:270:9661:-591.791,0,-417.085	0/1:227:89,137:89:3188:137:4869:-236.741,0,-214.823	0/1:205:58,147:58:2060:147:5268:-270.324,0,-121.912	0/1:7:3,4:3:108:4:144:-8.00937,0,-7.85692	0/1:72:23,49:23:820:49:1764:-88.2611,0,-51.6813	0/0:12:10,2:10:351:2:72:0,-0.0184586,-27.3546	0/1:31:18,13:18:640:13:464:-19,0,-46.852	0/1:23:9,14:9:324:14:496:-24.1141,0,-21.5235	0/1:656:301,355:301:10764:355:12731:-814.21,0,-759.634	0/1:423:150,273:150:5368:273:9737:-613.097,0,-347.392	0/1:226:110,116:110:3939:116:4152:-191.583,0,-273.379	0/1:3:1,2:1:36:2:72:-5.81554,0,-2.34307	0/1:195:66,129:66:2353:129:4632:-292.648,0,-150.614	0/1:116:60,56:60:2139:56:1990:-120.769,0,-154.951	0/1:362:133,229:133:4768:229:8150:-484.066,0,-315.188	0/1:260:88,172:88:3156:172:6168:-386.995,0,-202.267	0/1:124:71,53:71:2544:53:1895:-104.816,0,-188.81	0/1:371:114,257:114:4060:257:9111:-463.397,0,-249.152	0/1:154:74,80:74:2635:80:2864:-93.4331,0,-183.23	0/1:247:80,167:80:2872:167:5957:-378.386,0,-177.282	0/1:184:84,100:84:2984:100:3561:-166.324,0,-210.33	0/1:255:97,157:97:3468:157:5603:-364.67,0,-231.629	0/1:337:120,217:120:4288:217:7768:-484.833,0,-279.63	0/1:31:7,24:7:248:24:860:-61.2847,0,-13.1337	0/1:193:96,97:96:3432:97:3469:-160.738,0,-241.064	0/1:87:31,55:31:1112:55:1949:-96.2283,0,-73.213	0/1:22:16,6:16:572:6:216:-7.87244,0,-43.4846	0/1:225:80,145:80:2864:145:5191:-334.276,0,-186.903	0/1:68:29,39:29:1044:39:1396:-81.164,0,-72.7676	0/1:4:3,1:3:108:1:36:-2.332,0,-8.76001	0/1:37:14,23:14:500:23:824:-45.505,0,-33.6668	0/1:197:89,108:89:3180:108:3868:-181.26,0,-221.1	0/1:366:170,196:170:6072:196:7036:-328.124,0,-430.38	0/1:23:10,13:10:360:13:464:-26.7092,0,-25.4597	0/1:310:121,189:121:4324:189:6730:-326.594,0,-289.741	0/1:363:120,243:120:4296:243:8677:-443.441,0,-268.878	0/1:196:69,126:69:2459:126:4512:-287.692,0,-160.127	0/1:102:52,50:52:1860:50:1796:-82.0123,0,-135.245	0/1:477:119,358:119:4260:358:12743:-852.628,0,-235.078	0/1:131:63,68:63:2248:68:2427:-159.21,0,-161.132	0/1:79:42,37:42:1508:37:1324:-59.828,0,-110.753	0/1:155:76,78:76:2720:78:2792:-89.8394,0,-186.526	0/1:235:104,131:104:3715:131:4708:-290.86,0,-257.755	0/1:51:28,23:28:1008:23:828:-48.902,0,-74.624	0/1:284:152,132:152:5448:132:4692:-147.28,0,-385.27	0/1:82:43,39:43:1540:39:1396:-61.8786,0,-109.642	0/1:423:190,233:190:6768:233:8336:-387.528,0,-473.973	0/1:191:102,89:102:3652:89:3169:-137.505,0,-267.906	0/1:229:111,118:111:3964:118:4221:-215.551,0,-276.486	0/1:186:85,101:85:3040:101:3616:-122.076,0,-208.507	0/0:26:23,3:23:828:3:108:0,-2.5305,-67.0785	0/1:153:61,92:61:2192:92:3280:-157.879,0,-149.22	0/1:166:86,80:86:3080:80:2837:-144.733,0,-219.076	0/1:302:121,181:121:4340:181:6462:-393.033,0,-295.413	0/1:241:78,163:78:2786:163:5848:-365.858,0,-175.819	0/1:271:106,165:106:3816:165:5923:-399.545,0,-257.511	0/1:201:69,132:69:2464:132:4740:-300.684,0,-158.896	0/1:391:149,242:149:5302:242:8683:-531.07,0,-353.369	0/1:83:37,46:37:1300:46:1656:-57.0697,0,-88.7611	0/1:228:109,119:109:3889:119:4280:-138.925,0,-270.276	0/1:170:75,95:75:2671:95:3416:-113.651,0,-182.603	0/1:183:99,84:99:3544:84:3020:-176.859,0,-259.196	0/1:423:203,220:203:7251:220:7900:-475.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chr09	2111311	.	G	A	35020.3	PASS	AB=0.388055;ABP=2025.97;AC=87;AF=0.462766;AN=188;AO=7246;CIGAR=1X;DP=18929;DPB=18929;DPRA=51.4158;EPP=15737.5;EPPR=25043.2;GTI=22;LEN=1;MEANALT=1.08696;MQM=24.1985;MQMR=44.0946;NS=94;NUMALT=1;ODDS=1.0132;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=259062;QR=416920;RO=11675;RPL=0;RPP=15737.5;RPPR=25043.2;RPR=7246;RUN=1;SAF=7246;SAP=15737.5;SAR=0;SRF=11675;SRP=25355;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:36,6:36:1292:6:216:0,-2.23986,-95.5592	0/1:142:114,28:114:4092:28:1008:-6.91239,0,-300.084	0/1:150:111,39:111:3973:39:1404:-23.2372,0,-287.797	0/1:304:218,86:218:7798:86:3073:-100.933,0,-597.648	0/1:142:55,87:55:1976:87:3109:-153.583,0,-133.424	0/1:93:37,56:37:1324:56:1997:-71.4356,0,-87.3099	0/1:241:89,152:89:3185:152:5395:-264.634,0,-211.165	0/1:246:185,60:185:6587:60:2137:-31.8366,0,-476.554	0/1:145:72,72:72:2569:72:2592:-82.3533,0,-180.349	0/1:253:214,39:214:7624:39:1385:-12.5047,0,-600.234	0/1:218:113,105:113:4041:105:3757:-168.246,0,-293.625	0/1:231:103,128:103:3688:128:4582:-152.674,0,-249.157	0/1:161:132,29:132:4713:29:1042:-0.465107,0,-351.331	0/1:299:226,73:226:8081:73:2616:-74.2086,0,-623.063	0/1:151:106,45:106:3796:45:1620:-58.1612,0,-291.278	0/1:144:74,70:74:2656:70:2516:-109.427,0,-192.827	0/1:183:92,91:92:3289:91:3272:-103.26,0,-231.137	0/1:114:61,53:61:2188:53:1877:-58.224,0,-154.48	0/0:234:214,20:214:7657:20:720:0,-33.1668,-616.349	0/1:282:214,68:214:7665:68:2440:-70.6596,0,-590.684	0/1:352:121,231:121:4295:231:8285:-409.105,0,-275.065	0/1:194:153,41:153:5473:41:1464:-31.3398,0,-424.619	0/1:101:41,60:41:1457:60:2141:-105.038,0,-99.6092	0/1:217:162,55:162:5774:55:1972:-57.4267,0,-444.714	0/1:118:63,55:63:2233:55:1946:-85.6426,0,-161.893	0/1:533:362,171:362:12947:171:6125:-223.023,0,-986.241	0/1:243:123,119:123:4355:119:4261:-188.472,0,-312.108	0/1:64:23,41:23:824:41:1476:-72.2413,0,-53.3812	0/1:457:312,145:312:11140:145:5159:-186.768,0,-848.825	0/1:235:95,140:95:3378:140:4989:-240.71,0,-229.403	0/1:213:64,149:64:2269:149:5269:-268.352,0,-137.296	0/1:7:4,3:4:144:3:108:-4.80013,0,-11.0389	0/1:73:26,47:26:936:47:1673:-81.088,0,-61.4726	0/0:12:10,2:10:360:2:72:0,-0.0184586,-28.0804	0/1:32:24,8:24:856:8:288:-4.94595,0,-63.4606	0/1:24:15,9:15:540:9:324:-9.90232,0,-39.0563	0/1:668:543,124:543:19447:124:4452:-78.3811,0,-1519.31	0/1:428:296,132:296:10612:132:4736:-166.913,0,-807.37	0/1:228:163,65:163:5833:65:2336:-43.0265,0,-423.781	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.63051	0/1:201:135,65:135:4811:65:2328:-86.1546,0,-365.784	0/1:115:92,23:92:3304:23:824:-17.2377,0,-258.217	0/1:364:229,135:229:8100:135:4814:-190.872,0,-605.462	0/1:261:177,84:177:6305:84:3001:-109.132,0,-479.013	0/1:126:99,27:99:3540:27:972:-21.7427,0,-275.91	0/1:375:116,258:116:4126:258:9104:-459.659,0,-253.381	0/1:152:70,82:70:2499:82:2921:-97.2877,0,-172.099	0/1:254:173,81:173:6185:81:2908:-105.346,0,-465.477	0/1:188:85,103:85:3048:103:3638:-170.405,0,-214.307	0/1:260:203,57:203:7235:57:2048:-48.8013,0,-562.394	0/1:346:233,113:233:8316:113:4052:-150.448,0,-631.619	0/1:33:27,6:27:953:6:216:-3.63399,0,-74.916	0/1:193:139,54:139:4973:54:1932:-36.7993,0,-364.647	0/1:89:33,56:33:1184:56:2008:-98.2855,0,-78.9518	0/0:22:18,3:18:633:3:108:0,-0.773122,-48.875	0/1:229:171,58:171:6118:58:2084:-59.606,0,-470.176	0/1:70:43,27:43:1502:27:972:-42.3538,0,-112.753	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.3489	0/1:37:18,19:18:648:19:684:-32.7992,0,-46.7178	0/1:199:91,108:91:3260:108:3850:-179.799,0,-227.517	0/1:371:171,200:171:6140:200:7177:-335.933,0,-434.221	0/1:23:15,8:15:525:8:288:-11.0847,0,-40.0675	0/1:315:123,192:123:4409:192:6887:-335.042,0,-295.713	0/1:369:127,242:127:4522:242:8650:-434.571,0,-286.884	0/1:199:145,54:145:5166:54:1921:-60.9587,0,-395.338	0/1:101:52,49:52:1849:49:1756:-80.052,0,-134.533	0/1:491:348,142:348:12423:142:5070:-168.105,0,-950.877	0/1:133:115,18:115:4082:18:644:-0.798579,0,-322.993	0/1:78:41,37:41:1476:37:1332:-60.2115,0,-108.19	0/1:155:77,78:77:2738:78:2781:-88.977,0,-187.858	0/1:235:176,59:176:6285:59:2120:-61.8123,0,-483.574	0/1:50:40,10:40:1402:10:360:-7.76097,0,-109.803	0/1:286:153,133:153:5409:133:4725:-148.938,0,-381.292	0/1:81:57,24:57:2018:24:864:-19.4628,0,-147.537	0/1:429:190,239:190:6770:239:8543:-397.538,0,-472.021	0/1:197:105,92:105:3761:92:3296:-144.217,0,-275.862	0/1:230:181,49:181:6477:49:1749:-18.2723,0,-479.328	0/1:187:86,101:86:3058:101:3636:-121.831,0,-209.855	0/0:26:23,3:23:828:3:108:0,-2.5305,-67.0785	0/1:156:63,93:63:2252:93:3317:-158.999,0,-153.745	0/1:169:138,31:138:4960:31:1097:-2.9045,0,-368.412	0/1:302:204,98:204:7237:98:3528:-131.72,0,-550.761	0/1:240:156,84:156:5608:84:3012:-117.842,0,-423.67	0/1:274:230,44:230:8234:44:1576:-15.4543,0,-646.743	0/1:204:141,63:141:5056:63:2260:-77.9394,0,-386.511	0/1:396:267,129:267:9508:129:4602:-169.377,0,-720.251	0/1:84:38,46:38:1360:46:1656:-56.0857,0,-92.1428	0/1:229:108,121:108:3852:121:4310:-142.938,0,-266.489	0/1:171:76,95:76:2702:95:3408:-113.325,0,-184.875	0/1:184:147,37:147:5250:37:1328:-28.0943,0,-408.834	0/1:427:325,102:325:116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chr09	2111327	.	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chr09	2111403	.	G	A	65696	PASS	AB=0.655072;ABP=1228.05;AC=132;AF=0.702128;AN=188;AO=5685;CIGAR=1X;DP=7722;DPB=7722;DPRA=0;EPP=12347.8;EPPR=4413.27;GTI=8;LEN=1;MEANALT=1.06383;MQM=26.9912;MQMR=25.0679;NS=94;NUMALT=1;ODDS=0.0137392;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203807;QR=72348;RO=2031;RPL=0;RPP=12347.8;RPPR=4413.27;RPR=5685;RUN=1;SAF=0;SAP=12347.8;SAR=5685;SRF=0;SRP=4413.27;SRR=2031;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:6,13:6:216:13:468:-25.5339,0,-7.33485	1/1:85:0,85:0:0:85:3056:-202.822,-25.5876,0	1/1:44:0,44:0:0:44:1567:-104.802,-13.2453,0	1/1:83:0,83:0:0:83:2976:-197.77,-24.9855,0	0/1:50:12,37:12:428:37:1332:-73.2481,0,-10.093	0/1:68:18,50:18:648:50:1788:-98.7175,0,-17.6807	1/1:85:1,84:1:36:84:3016:-198.692,-23.214,0	0/1:159:57,102:57:2040:102:3668:-195.99,0,-74.9412	0/1:129:53,76:53:1883:76:2728:-142.145,0,-76.3631	0/1:120:41,78:41:1449:78:2804:-149.83,0,-57.1711	0/1:82:25,57:25:900:57:2048:-111.393,0,-33.4626	1/1:51:1,50:1:36:50:1792:-116.956,-12.979,0	0/1:77:29,48:29:1019:48:1724:-91.444,0,-38.9779	0/1:74:27,47:27:942:47:1688:-89.8822,0,-33.7439	0/1:77:31,46:31:1112:46:1638:-86.2069,0,-48.6106	0/1:75:31,44:31:1093:44:1567:-82.2251,0,-42.285	0/1:75:25,50:25:900:50:1796:-96.5654,0,-30.8924	1/1:44:0,44:0:0:44:1584:-105.149,-13.2453,0	1/1:34:0,33:0:0:33:1184:-78.5663,-9.93399,0	0/1:147:39,108:39:1387:108:3884:-213.071,0,-45.9129	0/1:151:48,103:48:1706:103:3699:-199.61,0,-53.1961	0/1:95:29,66:29:1044:66:2372:-128.852,0,-35.9507	1/1:36:1,34:1:27:34:1220:-79.0405,-8.60227,0	0/1:48:15,33:15:532:33:1180:-64.3565,0,-18.7781	1/1:34:0,34:0:0:34:1220:-81.2509,-10.235,0	0/1:306:134,172:134:4795:172:6177:-317.243,0,-204.712	0/1:186:47,139:47:1684:139:4988:-275.288,0,-40.6634	0/1:43:8,35:8:284:35:1251:-70.5265,0,-3.75033	0/1:241:71,170:71:2544:170:6072:-332.05,0,-85.3673	0/1:135:44,91:44:1576:91:3264:-175.872,0,-50.3274	0/1:146:50,96:50:1783:96:3452:-185.011,0,-68.6011	1/1:7:0,7:0:0:7:252:-16.951,-2.10721,0	1/1:21:0,21:0:0:21:748:-50.1195,-6.32163,0	1/1:7:0,7:0:0:7:252:-16.8689,-2.10721,0	0/1:13:3,10:3:108:10:360:-20.1889,0,-3.54695	1/1:3:0,3:0:0:3:108:-7.41608,-0.90309,0	0/1:229:60,169:60:2136:169:6068:-333.689,0,-65.6614	1/1:95:3,92:3:108:92:3293:-212.302,-22.3064,0	0/1:100:34,66:34:1211:66:2364:-127.306,0,-43.6842	1/1:4:0,4:0:0:4:144:-9.79982,-1.20412,0	0/1:153:68,85:68:2440:85:3056:-156.764,0,-93.3993	0/1:41:13,28:13:468:28:999:-54.4422,0,-14.5484	0/1:112:35,77:35:1252:77:2768:-149.707,0,-38.577	0/1:104:32,72:32:1135:72:2588:-140.526,0,-43.297	0/1:73:19,54:19:651:54:1932:-106.828,0,-22.087	1/1:57:0,57:0:0:57:2029:-136.123,-17.1587,0	1/1:92:0,92:0:0:92:3296:-219.244,-27.6948,0	1/1:118:1,117:1:36:117:4192:-276.065,-32.9628,0	0/1:132:48,84:48:1724:84:2993:-159.854,0,-71.6095	0/1:173:74,98:74:2656:98:3528:-181.403,0,-116.078	1/1:89:0,89:0:0:89:3200:-212.357,-26.7917,0	1/1:9:1,8:1:36:8:288:-16.4387,-0.150563,0	1/1:59:0,59:0:0:59:2124:-140.906,-17.7608,0	1/1:29:0,29:0:0:29:1044:-69.3933,-8.72987,0	0/1:33:12,21:12:410:21:752:-40.3281,0,-18.6814	0/1:94:33,61:33:1173:61:2165:-116.55,0,-40.8643	0/1:47:13,34:13:468:34:1220:-67.1025,0,-15.7903	0/1:9:3,6:3:104:6:216:-11.858,0,-4.15542	1/1:17:0,17:0:0:17:612:-40.707,-5.11751,0	0/1:89:25,64:25:857:64:2304:-126.033,0,-23.8582	0/1:115:30,85:30:1047:85:3052:-168.142,0,-33.4815	0/1:10:6,4:6:216:4:144:-6.78952,0,-10.5407	1/1:76:0,76:0:0:76:2728:-180.81,-22.8783,0	0/1:181:70,111:70:2500:111:3963:-209.54,0,-106.807	0/1:65:23,42:23:828:42:1512:-80.815,0,-28.6796	1/1:40:0,40:0:0:40:1436:-95.5533,-12.0412,0	0/1:263:111,152:111:3975:152:5444:-282.178,0,-173.711	0/1:110:32,78:32:1120:78:2795:-152.634,0,-39.4493	1/1:22:0,22:0:0:22:788:-52.6459,-6.62266,0	1/1:30:0,30:0:0:30:1072:-71.6547,-9.0309,0	0/1:89:31,57:31:1112:57:2048:-109.267,0,-42.626	0/1:31:16,15:16:558:15:531:-26.4631,0,-26.624	0/1:131:48,83:48:1705:83:2967:-157.152,0,-64.6602	0/1:74:28,46:28:1008:46:1652:-87.5796,0,-37.9298	0/1:98:41,57:41:1453:57:2040:-107.532,0,-54.4834	1/1:63:0,63:0:0:63:2264:-150.379,-18.9649,0	1/1:73:0,73:0:0:73:2615:-173.992,-21.9752,0	0/1:103:30,73:30:1068:73:2620:-143.15,0,-33.3002	1/1:8:0,8:0:0:8:288:-19.3348,-2.40824,0	1/1:51:0,51:0:0:51:1817:-121.173,-15.3525,0	0/1:52:20,32:20:707:32:1140:-60.3736,0,-26.965	0/1:168:72,96:72:2556:96:3444:-178.348,0,-112.872	0/1:96:32,64:32:1131:64:2296:-123.384,0,-42.4792	1/1:45:2,43:2:72:43:1544:-96.0494,-6.89122,0	0/1:75:23,52:23:820:52:1872:-101.561,0,-29.1013	1/1:91:2,89:2:72:89:3196:-206.794,-22.5322,0	1/1:45:0,45:0:0:45:1616:-108.011,-13.5464,0	0/1:79:15,64:15:540:64:2285:-128.519,0,-8.49864	1/1:60:0,60:0:0:60:2148:-142.694,-18.0618,0	1/1:32:0,32:0:0:32:1152:-76.5445,-9.63296,0	0/1:94:23,71:23:820:71:2533:-140.181,0,-19.3904	0/1:126:56,70:56:2003:70:2504:-128.801,0,-91.9942	1/1:59:0,59:0:0:59:2092:-139.896,-17.7608,0	1/1:59:0,59:0:0:59:2111:-140.468,-17.7608,0
chr09	2111410	.	A	G	66031	PASS	AB=0.657962;ABP=1272.83;AC=132;AF=0.702128;AN=188;AO=5707;CIGAR=1X;DP=7722;DPB=7722;DPRA=0;EPP=12395.6;EPPR=4198.02;GTI=7;LEN=1;MEANALT=1;MQM=27.0112;MQMR=25.0223;NS=94;NUMALT=1;ODDS=0.208377;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204187;QR=72249;RO=2015;RPL=0;RPP=12395.6;RPPR=4198.02;RPR=5707;RUN=1;SAF=0;SAP=12395.6;SAR=5707;SRF=0;SRP=4378.53;SRR=2015;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:6,13:6:216:13:453:-24.9482,0,-7.33485	1/1:83:0,83:0:0:83:2961:-197.351,-24.9855,0	1/1:44:0,44:0:0:44:1576:-105.027,-13.2453,0	1/1:88:0,88:0:0:88:3155:-209.253,-26.4906,0	0/1:49:13,36:13:464:36:1273:-70.3898,0,-12.3944	0/1:67:18,49:18:636:49:1760:-96.7569,0,-17.8794	1/1:84:1,83:1:36:83:2968:-196.125,-22.913,0	0/1:163:59,104:59:2100:104:3719:-199.546,0,-77.1521	0/1:129:52,77:52:1868:77:2759:-144.393,0,-75.285	0/1:121:42,79:42:1512:79:2836:-151.809,0,-60.4986	0/1:81:25,56:25:891:56:2016:-109.371,0,-33.6285	1/1:49:0,49:0:0:49:1760:-117.007,-14.7505,0	0/1:75:27,48:27:968:48:1724:-92.046,0,-35.459	0/1:75:27,48:27:968:48:1704:-91.2192,0,-34.1736	0/1:77:31,46:31:1112:46:1648:-86.5343,0,-48.5938	0/1:71:29,42:29:1044:42:1508:-79.7184,0,-39.6107	0/1:75:26,49:26:932:49:1756:-94.1206,0,-31.9329	1/1:45:0,45:0:0:45:1608:-107.35,-13.5464,0	1/1:35:1,34:1:36:34:1216:-78.9362,-8.3529,0	0/1:147:40,107:40:1436:107:3836:-210.504,0,-48.3243	0/1:149:49,100:49:1760:100:3591:-193.48,0,-56.5679	0/1:98:30,68:30:1080:68:2436:-132.594,0,-37.2678	1/1:36:2,34:2:72:34:1224:-75.7324,-5.17833,0	0/1:46:14,32:14:504:32:1148:-63.4074,0,-16.2876	1/1:36:0,36:0:0:36:1275:-85.6711,-10.8371,0	0/1:302:133,169:133:4753:169:6049:-311.239,0,-203.219	0/1:191:48,143:48:1713:143:5116:-282.645,0,-40.8254	0/1:43:8,35:8:288:35:1248:-70.568,0,-3.77781	0/1:239:70,169:70:2498:169:6005:-329.534,0,-83.1822	0/1:134:43,91:43:1524:91:3264:-176.173,0,-48.2174	0/1:146:50,96:50:1796:96:3440:-184.839,0,-68.8818	1/1:7:0,7:0:0:7:244:-16.8272,-2.10721,0	1/1:21:0,21:0:0:21:747:-50.0166,-6.32163,0	1/1:7:0,7:0:0:7:248:-16.8069,-2.10721,0	0/1:12:2,10:2:72:10:360:-20.4899,0,-1.72634	1/1:3:0,3:0:0:3:108:-7.41608,-0.90309,0	0/1:230:59,171:59:2124:171:6110:-338.383,0,-62.8286	1/1:95:3,92:3:108:92:3304:-212.822,-22.3064,0	0/1:99:34,65:34:1224:65:2322:-124.957,0,-44.1537	1/1:4:0,4:0:0:4:144:-9.79982,-1.20412,0	0/1:153:67,86:67:2400:86:3088:-159.087,0,-91.2507	0/1:42:14,28:14:500:28:999:-54.1412,0,-16.271	0/1:111:34,77:34:1220:77:2741:-149.255,0,-36.7751	0/1:105:31,74:31:1108:74:2652:-144.87,0,-39.5463	0/1:72:19,53:19:684:53:1883:-104.46,0,-23.0184	1/1:57:0,57:0:0:57:2048:-136.766,-17.1587,0	1/1:91:0,91:0:0:91:3256:-216.799,-27.3937,0	1/1:118:1,117:1:36:117:4195:-276.013,-32.9628,0	0/1:132:48,84:48:1724:84:2982:-159.786,0,-70.9893	0/1:172:73,99:73:2609:99:3543:-183.737,0,-114.527	1/1:87:0,87:0:0:87:3120:-207.467,-26.1896,0	1/1:9:1,8:1:36:8:288:-16.4387,-0.150563,0	1/1:60:0,60:0:0:60:2160:-143.289,-18.0618,0	1/1:29:0,29:0:0:29:1031:-69.107,-8.72987,0	0/1:34:13,21:13:459:21:752:-40.0271,0,-22.013	0/1:89:30,59:30:1080:59:2116:-114.071,0,-36.5692	0/1:47:13,34:13:468:34:1212:-66.9802,0,-15.7903	0/1:9:3,6:3:108:6:212:-11.796,0,-4.19807	1/1:16:0,16:0:0:16:576:-38.3232,-4.81648,0	0/1:90:25,65:25:900:65:2328:-127.932,0,-24.4078	0/1:117:30,87:30:1080:87:3124:-172.308,0,-33.6149	0/1:10:6,4:6:216:4:136:-6.66423,0,-10.5407	1/1:75:0,75:0:0:75:2683:-178.265,-22.5773,0	0/1:180:70,110:70:2520:110:3933:-207.284,0,-107.351	0/1:64:22,42:22:792:42:1512:-81.116,0,-26.9298	1/1:40:0,40:0:0:40:1436:-95.5533,-12.0412,0	0/1:266:111,155:111:3979:155:5534:-288.383,0,-172.745	0/1:112:32,80:32:1152:80:2856:-156.739,0,-39.6441	1/1:22:0,22:0:0:22:788:-52.6459,-6.62266,0	1/1:30:0,30:0:0:30:1076:-71.7159,-9.0309,0	0/1:88:30,58:30:1076:58:2063:-111.515,0,-40.6576	0/1:31:16,15:16:576:15:536:-26.6276,0,-27.0085	0/1:132:48,84:48:1728:84:3003:-159.254,0,-64.6575	0/1:71:26,45:26:936:45:1616:-86.0989,0,-34.5606	0/1:95:38,57:38:1360:57:2044:-108.496,0,-50.5607	1/1:63:0,63:0:0:63:2253:-149.859,-18.9649,0	1/1:71:0,71:0:0:71:2544:-169.327,-21.3731,0	0/1:105:30,75:30:1080:75:2684:-147.193,0,-32.7989	1/1:9:0,9:0:0:9:324:-21.7185,-2.70927,0	1/1:54:0,54:0:0:54:1935:-128.681,-16.2556,0	0/1:53:20,33:20:720:33:1176:-62.4563,0,-26.8328	0/1:168:72,96:72:2588:96:3440:-179.056,0,-113.466	0/1:98:32,66:32:1152:66:2359:-127.324,0,-42.1633	1/1:45:0,45:0:0:45:1620:-109.074,-13.5464,0	0/1:74:22,52:22:779:52:1863:-101.637,0,-27.4896	1/1:93:2,91:2:72:91:3259:-211.31,-23.1342,0	1/1:45:0,45:0:0:45:1607:-107.786,-13.5464,0	0/1:78:15,63:15:540:63:2259:-126.855,0,-8.79967	1/1:60:0,60:0:0:60:2141:-142.235,-18.0618,0	1/1:32:0,32:0:0:32:1152:-76.5445,-9.63296,0	0/1:95:23,72:23:824:72:2568:-142.612,0,-19.1166	0/1:128:56,72:56:2012:72:2575:-133.623,0,-89.4905	1/1:60:0,60:0:0:60:2139:-142.8,-18.0618,0	1/1:60:0,60:0:0:60:2148:-142.955,-18.0618,0
chr09	2111434	.	CCTT	ACTG,CCTG	91421.1	PASS	AB=0.66182,0.335785;ABP=1332.66,1372.31;AC=132,56;AF=0.702128,0.297872;AN=188;AO=5720,1973;CIGAR=1X2M1X,3M1X;DP=7713;DPB=7713;DPRA=0,2.25218;EPP=12423.8,4287.33;EPPR=7.35324;GTI=9;LEN=4,1;MEANALT=1.85106,2.2381;MQM=27.0042,24.9554;MQMR=46;NS=94;NUMALT=2;ODDS=0.0454516;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=202816,70621;QR=72;RO=2;RPL=5720,1973;RPP=12423.8,4287.33;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12423.8,4287.33;SAR=5720,1973;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:19:0,13,6:0:0:13,6:465,216:-38.3087,-11.2482,-7.33485,-27.3064,0,-25.5002	1/1:85:0,85,0:0:0:85,0:3002,0:-201.738,-25.5876,0,-201.738,-25.5876,-201.738	1/1:44:0,44,0:0:0:44,0:1557,0:-104.688,-13.2453,0,-104.688,-13.2453,-104.688	1/1:87:0,87,0:0:0:87,0:3085,0:-206.43,-26.1896,0,-206.43,-26.1896,-206.43	1/2:49:0,36,13:0:0:36,13:1246,464:-96.3839,-22.6885,-11.8514,-73.9302,0,-70.0168	1/2:63:0,49,14:0:0:49,14:1727,504:-127.307,-26.0141,-11.2636,-101.536,0,-97.3216	1/1:84:0,82,1:0:0:82,1:2909,36:-194.438,-24.6845,0,-192.603,-22.9058,-192.302	1/2:159:0,104,55:0:0:104,55:3687,1964:-318.478,-103.125,-71.8176,-215.602,0,-199.046	1/2:130:0,78,52:0:0:78,52:2720,1872:-258.02,-97.7284,-74.2481,-160.542,0,-144.888	1/2:120:0,80,40:0:0:80,40:2844,1428:-245.15,-79.3619,-55.2795,-166.044,0,-154.003	1/2:82:0,57,25:0:0:57,25:2002,900:-168.306,-50.6213,-33.4626,-117.943,0,-110.418	1/1:51:0,50,1:0:0:50,1:1786,36:-118.996,-15.0515,0,-117.161,-12.979,-116.86	1/2:76:0,49,27:0:0:49,27:1732,964:-151.448,-49.9592,-35.2087,-101.736,0,-93.6084	1/2:75:0,49,26:0:0:49,26:1727,932:-148.039,-46.7877,-32.0373,-101.495,0,-93.6678	1/2:77:0,47,30:0:0:47,30:1668,1080:-156.95,-59.5507,-45.4023,-97.6565,0,-88.6256	1/2:75:0,45,30:0:0:45,30:1600,1068:-147.82,-53.6744,-40.1281,-94.3904,0,-85.3595	1/2:77:0,51,26:0:0:51,26:1798,927:-152.038,-46.707,-31.3544,-105.574,0,-97.7471	1/1:45:0,45,0:0:0:45,0:1614,0:-107.466,-13.5464,0,-107.466,-13.5464,-107.466	1/1:34:0,33,1:0:0:33,1:1167,36:-78.3803,-9.93399,0,-76.7178,-8.05187,-76.4168	1/2:145:0,106,39:0:0:106,39:3761,1392:-297.57,-78.1749,-46.2657,-219.653,0,-207.912	1/2:149:0,102,46:0:0:102,46:3600,1644:-291.764,-81.0668,-50.3618,-210.673,0,-196.826	1/2:97:0,68,29:0:0:68,29:2401,1025:-195.958,-55.3153,-34.8453,-140.893,0,-132.163	1/1:35:1,34,0:1:36:34,0:1206,0:-77.526,-6.953,0,-77.827,-10.235,-80.7534	1/2:48:0,33,14:0:0:33,14:1169,496:-94.7848,-25.6146,-15.6806,-69.1642,0,-64.9498	1/1:36:0,36,0:0:0:36,0:1274,0:-85.6573,-10.8371,0,-85.6573,-10.8371,-85.6573	1/2:300:0,169,130:0:0:169,130:6009,4633:-598.916,-248.31,-197.436,-350.595,0,-311.461	1/2:189:0,140,47:0:0:140,47:4947,1688:-372.034,-82.2704,-40.1262,-289.737,0,-275.588	1/2:43:0,35,8:0:0:35,8:1244,288:-86.8465,-14.3139,-3.77781,-72.7681,0,-70.3599	1/2:242:0,170,71:0:0:170,71:6052,2540:-488.461,-135.993,-84.8181,-352.371,0,-330.998	1/2:132:0,91,40:0:0:91,40:3215,1440:-258.845,-70.964,-43.5703,-187.863,0,-175.822	1/2:146:0,96,50:0:0:96,50:3391,1796:-296.431,-97.7701,-68.8712,-198.916,0,-183.865	1/1:6:0,6,0:0:0:6,0:205,0:-14.3838,-1.80618,0,-14.3838,-1.80618,-14.3838	1/1:20:0,20,0:0:0:20,0:712,0:-47.783,-6.0206,0,-47.783,-6.0206,-47.783	1/1:6:0,6,0:0:0:6,0:210,0:-14.4529,-1.80618,0,-14.4529,-1.80618,-14.4529	1/2:13:0,10,3:0:0:10,3:357,108:-27.3494,-6.55725,-3.54695,-21.0582,0,-20.1551	1/1:3:0,3,0:0:0:3,0:103,0:-7.34132,-0.90309,0,-7.34132,-0.90309,-7.34132	1/2:230:0,173,57:0:0:173,57:6121,2048:-468.258,-109.411,-57.333,-359.097,0,-341.938	1/1:95:0,91,3:0:0:91,3:3231,108:-215.838,-27.3937,0,-210.676,-22.2601,-209.773	1/2:100:0,66,34:0:0:66,34:2345,1216:-200.485,-63.6535,-43.7855,-137.08,0,-126.845	1/1:4:0,4,0:0:0:4,0:144,0:-9.79982,-1.20412,0,-9.79982,-1.20412,-9.79982	1/2:155:0,86,69:0:0:86,69:3062,2457:-298.873,-120.321,-94.4323,-178.796,0,-158.025	1/2:41:0,28,13:0:0:28,13:1005,464:-81.2552,-22.9499,-14.521,-58.5447,0,-54.6314	1/2:112:0,76,35:0:0:76,35:2702,1256:-219.056,-61.5196,-38.6413,-157.512,0,-146.976	1/2:104:0,74,30:0:0:74,30:2632,1076:-213.81,-60.2738,-37.9976,-153.794,0,-144.763	1/2:74:0,55,19:0:0:55,19:1963,680:-153.225,-38.9225,-22.3658,-114.564,0,-108.844	1/1:57:0,56,0:0:0:56,0:1993,0:-133.037,-16.8577,0,-133.037,-16.8577,-133.037	1/1:91:0,91,0:0:0:91,0:3227,0:-216.256,-27.3937,0,-216.256,-27.3937,-216.256	1/1:118:0,116,1:0:0:116,1:4064,36:-274.044,-34.9195,0,-272.042,-32.9141,-271.741	1/2:130:0,83,47:0:0:83,47:2964,1688:-267.864,-95.3486,-70.3631,-172.776,0,-158.628	1/2:170:0,99,71:0:0:99,71:3539,2536:-345.861,-140.388,-110.586,-205.73,0,-184.357	1/1:89:0,88,0:0:0:88,0:3138,0:-209.326,-26.4906,0,-209.326,-26.4906,-209.326	1/1:9:0,8,1:0:0:8,1:287,36:-18.7298,-2.40824,0,-16.7284,-0.150564,-16.4274	1/1:61:0,61,0:0:0:61,0:2171,0:-145.239,-18.3628,0,-145.239,-18.3628,-145.239	1/1:29:0,29,0:0:0:29,0:1043,0:-69.3821,-8.72987,0,-69.3821,-8.72987,-69.3821	1/2:33:0,21,12:0:0:21,12:738,428:-69.884,-26.6044,-20.2827,-43.5515,0,-39.9392	1/2:95:0,63,31:0:0:63,31:2236,1108:-185.14,-54.6041,-35.6392,-130.546,0,-121.214	1/2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chr09	2179265	.	A	G,C	189502	PASS	AB=0.579846,0.415884;ABP=197.547,218.91;AC=137,51;AF=0.728723,0.271277;AN=188;AO=5671,1474;CIGAR=1X,1X;DP=7172;DPB=7172;DPRA=0,0.837323;EPP=1974.36,3.03387;EPPR=16.5402;GTI=0;LEN=1,1;MEANALT=1.78723,2.11475;MQM=59.9847,59.9763;MQMR=59.3846;NS=94;NUMALT=2;ODDS=9.19329;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=199026,51959;QR=468;RO=13;RPL=5611,1463;RPP=11801.8,3108.93;RPPR=31.2394;RPR=60,11;RUN=1,1;SAF=1643,728;SAP=2181.08,3.48761;SAR=4028,746;SRF=2;SRP=16.5402;SRR=11;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:17:0,9,8:0:0:9,8:320,288:-49.9345,-23.8592,-21.1499,-26.4331,0,-24.0248	1/1:30:0,30,0:0:0:30,0:1050,0:-94.8088,-9.0309,0,-94.8088,-9.0309,-94.8088	1/1:40:0,40,0:0:0:40,0:1402,0:-126.476,-12.0412,0,-126.476,-12.0412,-126.476	1/1:34:0,34,0:0:0:34,0:1186,0:-107.043,-10.235,0,-107.043,-10.235,-107.043	1/2:27:0,13,14:0:0:13,14:450,495:-77.2347,-40.6686,-36.7552,-36.9157,0,-32.7013	1/2:13:0,6,7:0:0:6,7:212,248:-37.822,-20.557,-18.7508,-17.6186,0,-15.5114	1/1:41:0,40,1:0:0:40,1:1368,36:-123.055,-12.0412,0,-120.117,-8.74396,-119.816	1/2:25:0,11,14:0:0:11,14:372,471:-68.6504,-38.4944,-35.183,-30.4934,0,-26.2789	1/2:24:0,9,15:0:0:9,15:324,536:-70.4834,-44.0456,-41.3363,-26.7966,0,-22.2811	1/2:22:0,14,8:0:0:14,8:492,275:-62.7268,-22.6752,-18.4608,-40.3979,0,-37.9897	1/2:263:0,217,46:0:0:217,46:7544,1614:-745.03,-131.7,-66.3767,-613.68,0,-599.833	1/1:105:0,105,0:0:0:105,0:3733,0:-336.171,-31.6082,0,-336.171,-31.6082,-336.171	1/2:113:0,58,55:0:0:58,55:2046,1949:-325.725,-159.127,-141.668,-166.951,0,-150.394	1/2:114:0,46,68:0:0:46,68:1596,2395:-325.039,-195.334,-181.487,-130.054,0,-109.584	1/2:68:0,35,33:0:0:35,33:1234,1165:-195.695,-95.221,-84.685,-100.827,0,-90.8926	1/2:125:0,70,55:0:0:70,55:2468,1954:-360.525,-159.578,-138.506,-201.301,0,-184.744	1/2:111:0,59,52:0:0:59,52:2074,1847:-319.669,-150.856,-133.095,-169.167,0,-153.513	1/1:97:0,97,0:0:0:97,0:3432,0:-309.094,-29.1999,0,-309.094,-29.1999,-309.094	1/1:230:1,228,0:1:36:228,0:8028,0:-718.954,-65.6974,0,-719.255,-68.6348,-722.192	1/2:40:0,25,15:0:0:25,15:861,532:-113.624,-43.6976,-36.1719,-70.2766,0,-65.7611	1/2:27:0,6,21:0:0:6,21:208,752:-78.2703,-61.366,-59.5599,-17.2529,0,-10.9313	1/2:7:0,3,4:0:0:3,4:88,144:-19.0957,-12.1095,-11.2064,-7.30795,0,-6.10383	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:26:0,14,12:0:0:14,12:500,432:-76.3721,-35.6088,-31.3944,-41.1218,0,-37.5094	1/1:14:0,14,0:0:0:14,0:483,0:-43.7973,-4.21442,0,-43.7973,-4.21442,-43.7973	1/2:50:0,20,30:0:0:20,30:707,1068:-144.981,-87.4012,-81.3806,-57.934,0,-48.9031	1/2:57:0,37,20:0:0:37,20:1312,697:-163.923,-57.0301,-45.892,-107.244,0,-101.223	1/2:47:0,22,25:0:0:22,25:774,896:-136.437,-73.4346,-66.8119,-63.3576,0,-55.8318	1/2:34:1,15,18:1:36:15,18:514,615:-88.3773,-46.952,-45.3749,-38.7711,0,-36.2911	1/2:12:0,7,5:0:0:7,5:248,180:-35.2464,-15.0469,-12.9397,-20.557,0,-19.0518	1/2:23:0,14,9:0:0:14,9:500,315:-66.7471,-25.978,-21.7635,-41.1218,0,-38.4125	1/1:77:0,75,1:0:0:75,1:2617,31:-235.442,-22.5773,0,-232.954,-20.1137,-232.653	1/1:76:0,76,0:0:0:76,0:2644,0:-238.206,-22.8783,0,-238.206,-22.8783,-238.206	1/1:122:0,121,0:0:0:121,0:4257,0:-382.955,-36.4246,0,-382.955,-36.4246,-382.955	1/1:106:0,103,3:0:0:103,3:3646,104:-328,-31.0061,0,-319.547,-22.2064,-318.644	1/1:92:0,92,0:0:0:92,0:3225,0:-290.476,-27.6948,0,-290.476,-27.6948,-290.476	1/2:211:0,105,106:0:0:105,106:3709,3757:-608.47,-306.42,-274.811,-302.404,0,-270.495	1/1:10:0,10,0:0:0:10,0:335,0:-30.4745,-3.0103,0,-30.4745,-3.0103,-30.4745	1/2:275:0,210,63:0:0:210,63:7413,2223:-784.662,-181.007,-117.791,-603.647,0,-584.682	1/1:35:0,34,1:0:0:34,1:1208,36:-108.666,-10.235,0,-105.729,-6.93778,-105.428	1/2:48:0,23,24:0:0:23,24:803,860:-135.449,-70.1374,-63.2137,-65.3053,0,-58.0806	1/2:145:3,110,32:3:108:110,32:3905,1118:-399.399,-82.121,-57.8208,-309.36,0,-308.539	1/2:37:0,19,18:0:0:19,18:662,644:-106.702,-52.8721,-47.1525,-54.1828,0,-48.7643	1/2:116:0,50,66:0:0:50,66:1719,2312:-328.063,-188.472,-173.421,-139.937,0,-120.069	1/2:61:0,30,31:0:0:30,31:1053,1061:-172.161,-86.4599,-77.429,-86.0477,0,-76.7157	1/1:24:0,24,0:0:0:24,0:856,0:-77.3611,-7.22472,0,-77.3611,-7.22472,-77.3611	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:47:0,47,0:0:0:47,0:1637,0:-147.615,-14.1484,0,-147.615,-14.1484,-147.615	1/2:21:0,12,9:0:0:12,9:432,312:-60.9627,-25.7061,-22.0937,-35.6088,0,-32.8996	1/2:35:0,14,21:0:0:14,21:500,756:-102.809,-62.0456,-57.8312,-41.1218,0,-34.8001	1/1:25:0,25,0:0:0:25,0:870,0:-78.6146,-7.52575,0,-78.6146,-7.52575,-78.6146	1/1:84:0,84,0:0:0:84,0:2932,0:-264.117,-25.2865,0,-264.117,-25.2865,-264.117	1/1:42:0,41,0:0:0:41,0:1423,0:-128.003,-12.3422,0,-128.003,-12.3422,-128.003	1/1:10:0,10,0:0:0:10,0:326,0:-29.6557,-3.0103,0,-29.6557,-3.0103,-29.6557	1/1:26:0,25,1:0:0:25,1:883,36:-79.4279,-7.52575,0,-76.4902,-4.22851,-76.1892	1/2:29:0,19,10:0:0:19,10:672,360:-84.4636,-29.734,-24.0144,-55.0873,0,-52.077	1/2:15:0,10,5:0:0:10,5:347,180:-43.2447,-15.0469,-12.0366,-28.5533,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chr09	2179532	.	ATTAT	GTTAT,GTTAC	74892.8	PASS	AB=0.767622,0.22773;ABP=806.137,834.274;AC=142,42;AF=0.771739,0.228261;AN=184;AO=3198,310;CIGAR=1X4M,1X3M1X;DP=3522;DPB=3522;DPRA=0,0.770495;EPP=6930.02,676.167;EPPR=0;GTI=10;LEN=1,5;MEANALT=1.68478,2.16;MQM=59.9678,59.9355;MQMR=0;NS=92;NUMALT=2;ODDS=425.439;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=113003,10799;QR=0;RO=0;RPL=2,0;RPP=6930.02,676.167;RPPR=0;RPR=3196,310;RUN=1,1;SAF=0,0;SAP=6947.38,676.167;SAR=3198,310;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19,0:0:0:19,0:676,0:-61.168,-5.71957,0,-61.168,-5.71957,-61.168	1/1:29:0,29,0:0:0:29,0:1006,0:-90.8491,-8.72987,0,-90.8491,-8.72987,-90.8491	1/1:93:0,93,0:0:0:93,0:3287,0:-296.047,-27.9958,0,-296.047,-27.9958,-296.047	1/1:170:0,170,0:0:0:170,0:6045,0:-544.157,-51.1751,0,-544.157,-51.1751,-544.157	1/1:14:0,13,1:0:0:13,1:468,36:-42.0998,-3.91339,0,-39.1624,-0.616145,-38.8614	1/2:8:0,7,1:0:0:7,1:252,36:-23.8592,-3.29724,-1.19003,-20.9217,0,-20.6207	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3154,-8.42884,0,-90.3154,-8.42884,-90.3154	1/2:59:0,51,7:0:0:51,7:1790,227:-164.039,-18.3512,-2.99862,-145.729,0,-143.622	1/2:22:0,19,3:0:0:19,3:654,108:-62.2749,-9.17208,-3.45251,-53.4605,0,-52.5574	1/2:21:0,15,6:0:0:15,6:536,214:-61.5043,-17.8016,-13.2861,-44.0594,0,-42.2532	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:64:0,64,0:0:0:64,0:2227,0:-200.692,-19.2659,0,-200.692,-19.2659,-200.692	1/2:28:0,20,8:0:0:20,8:702,279:-80.1729,-23.0403,-17.0197,-57.4819,0,-55.0737	1/2:15:0,8,7:0:0:8,7:280,244:-42.9739,-20.1919,-17.7837,-23.1311,0,-21.0239	1/2:19:0,9,10:0:0:9,10:315,357:-55.0867,-29.4619,-26.7526,-25.978,0,-22.9677	1/1:22:0,20,2:0:0:20,2:672,66:-60.4623,-6.0206,0,-55.1268,-0.354711,-54.5248	1/2:12:0,6,6:0:0:6,6:216,205:-34.6117,-16.978,-15.1719,-17.9843,0,-16.1782	1/1:13:0,13,0:0:0:13,0:464,0:-42.0868,-3.91339,0,-42.0868,-3.91339,-42.0868	1/1:13:0,13,0:0:0:13,0:460,0:-41.7354,-3.91339,0,-41.7354,-3.91339,-41.7354	1/2:40:0,33,7:0:0:33,7:1168,251:-115.966,-20.8306,-10.8967,-95.4932,0,-93.386	1/1:44:0,41,3:0:0:41,3:1448,98:-130.288,-12.3422,0,-122.375,-4.10115,-121.472	1/2:36:0,27,9:0:0:27,9:955,317:-103.945,-26.1605,-18.0327,-78.137,0,-75.4278	1/1:48:0,48,0:0:0:48,0:1695,0:-152.835,-14.4494,0,-152.835,-14.4494,-152.835	1/1:12:0,11,0:0:0:11,0:377,0:-33.9727,-3.31133,0,-33.9727,-3.31133,-33.9727	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/2:63:0,52,11:0:0:52,11:1860,389:-183.709,-32.0371,-16.3835,-152.026,0,-148.715	1/1:64:0,62,2:0:0:62,2:2205,71:-198.359,-18.6639,0,-192.574,-12.5239,-191.971	1/2:11:0,9,2:0:0:9,2:320,71:-32.2181,-6.14,-3.43073,-26.4331,0,-25.831	1/2:103:0,88,14:0:0:88,14:3097,501:-292.796,-40.9087,-14.418,-251.94,0,-247.726	1/1:58:0,58,0:0:0:58,0:2051,0:-184.861,-17.4597,0,-184.861,-17.4597,-184.861	1/2:30:0,27,3:0:0:27,3:968,102:-87.5813,-8.61351,-0.485701,-79.3096,0,-78.4065	1/1:6:0,6,0:0:0:6,0:207,0:-18.9669,-1.80618,0,-18.9669,-1.80618,-18.9669	1/1:14:0,14,0:0:0:14,0:500,0:-45.3362,-4.21442,0,-45.3362,-4.21442,-45.3362	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:5:0,3,2:0:0:3,2:108,66:-14.4961,-5.66589,-4.7628,-9.17208,0,-8.57002	1/1:13:0,13,0:0:0:13,0:453,0:-41.1005,-3.91339,0,-41.1005,-3.91339,-41.1005	1/2:63:0,46,17:0:0:46,17:1604,604:-180.02,-49.5734,-35.726,-130.8,0,-125.683	1/1:73:0,73,0:0:0:73,0:2589,0:-233.258,-21.9752,0,-233.258,-21.9752,-233.258	1/2:15:0,7,8:0:0:7,8:244,275:-42.5224,-22.6763,-20.5691,-20.1922,0,-17.784	.:.:.:.:.:.:.:.	1/2:42:0,38,4:0:0:38,4:1341,144:-121.299,-12.1095,-0.670357,-109.548,0,-108.344	1/2:12:0,7,5:0:0:7,5:252,178:-35.4278,-14.8636,-12.7564,-20.9217,0,-19.4166	1/1:51:0,47,4:0:0:47,4:1629,139:-146.545,-14.1484,0,-135.244,-2.50013,-134.04	1/2:10:0,8,2:0:0:8,2:288,67:-29.2801,-5.76078,-3.35254,-23.8592,0,-23.2571	1/2:13:0,10,3:0:0:10,3:343,104:-36.6445,-8.79988,-5.78958,-28.1903,0,-27.2872	1/1:56:0,56,0:0:0:56,0:1995,0:-179.823,-16.8577,0,-179.823,-16.8577,-179.823	1/1:85:0,85,0:0:0:85,0:3032,0:-273.103,-25.5876,0,-273.103,-25.5876,-273.103	1/1:129:0,127,1:0:0:127,1:4499,36:-404.75,-38.2308,0,-401.813,-35.2634,-401.512	1/2:36:0,28,8:0:0:28,8:979,272:-102.054,-22.4028,-13.974,-79.9932,0,-77.585	1/2:63:0,50,13:0:0:50,13:1772,442:-180.56,-36.1912,-21.1397,-144.712,0,-140.798	1/1:83:0,83,0:0:0:83,0:2941,0:-264.925,-24.9855,0,-264.925,-24.9855,-264.925	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:66:0,66,0:0:0:66,0:2359,0:-212.568,-19.868,0,-212.568,-19.868,-212.568	1/1:38:0,38,0:0:0:38,0:1345,0:-121.348,-11.4391,0,-121.348,-11.4391,-121.348	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:39:0,37,2:0:0:37,2:1307,71:-117.576,-11.1381,0,-111.791,-4.99811,-111.189	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:7:0,5,2:0:0:5,2:180,71:-20.8306,-6.14,-4.63485,-15.0469,0,-14.4449	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:25:0,19,5:0:0:19,5:676,172:-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chr09	2205795	.	T	C	29658.5	PASS	AB=0.473203;ABP=27.5661;AC=59;AF=0.317204;AN=186;AO=1874;CIGAR=1X;DP=6245;DPB=6245;DPRA=1.18794;EPP=4072.35;EPPR=9490.17;GTI=1;LEN=1;MEANALT=1.03279;MQM=45.2556;MQMR=50.5624;NS=93;NUMALT=1;ODDS=0.894222;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67226;QR=156444;RO=4369;RPL=0;RPP=4072.35;RPPR=9490.17;RPR=1874;RUN=1;SAF=1874;SAP=4072.35;SAR=0;SRF=4369;SRP=9490.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:3,1:3:108:1:36:-2.3444,0,-8.85528	0/0:82:82,0:82:2936:0:0:0,-24.6845,-262.424	0/0:59:57,2:57:2029:2:72:0,-11.3243,-175.361	0/0:133:133,0:133:4768:0:0:0,-40.037,-425.666	0/1:25:5,20:5:180:20:720:-56.3624,0,-8.98292	0/1:24:15,9:15:540:9:316:-20.9445,0,-41.5707	0/0:198:198,0:198:7076:0:0:0,-59.6039,-631.906	0/1:108:60,48:60:2152:48:1724:-118.955,0,-160.843	0/1:88:43,45:43:1536:45:1620:-115.88,0,-111.27	0/1:59:41,18:41:1460:18:648:-40.2806,0,-112.478	0/1:26:13,13:13:460:13:468:-34.1445,0,-33.3246	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.453	0/1:51:26,25:26:936:25:896:-64.0631,0,-68.9429	0/1:31:16,15:16:576:15:536:-38.0329,0,-42.4992	0/1:35:20,15:20:720:15:532:-36.3231,0,-54.1022	0/1:25:16,9:16:572:9:320:-21.1449,0,-44.1338	0/1:33:13,20:13:468:20:720:-53.9087,0,-32.3404	0/0:37:37,0:37:1324:0:0:0,-11.1381,-118.728	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.9116	0/1:122:91,31:91:3276:31:1116:-62.4933,0,-256.623	0/1:98:58,40:58:2076:40:1440:-97.5378,0,-156.705	0/1:91:25,66:25:896:66:2356:-181.922,0,-53.1862	0/0:64:61,3:61:2176:3:108:0,-9.30179,-184.907	0/1:20:11,9:11:392:9:316:-22.3033,0,-28.8699	0/0:51:51,0:51:1821:0:0:0,-15.3525,-161.834	0/1:265:148,117:148:5300:117:4197:-293.797,0,-392.669	0/1:169:90,79:90:3212:79:2824:-199.238,0,-237.103	0/1:15:9,6:9:324:6:216:-14.9902,0,-24.9152	0/1:234:102,132:102:3656:132:4728:-350.408,0,-256.693	0/1:84:37,45:37:1332:45:1616:-117.428,0,-94.701	0/1:74:40,34:40:1428:34:1224:-86.3615,0,-105.961	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6656	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.3893	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2809	0/1:109:60,49:60:2148:49:1764:-124.29,0,-159.217	0/0:147:144,3:144:5141:3:108:0,-34.3271,-450.309	0/1:34:21,13:21:752:13:464:-30.8535,0,-57.5283	1/1:1:0,1:0:0:1:36:-3.53612,-0.30103,0	0/1:105:58,47:58:2088:47:1692:-117.388,0,-154.688	0/1:15:9,6:9:324:6:216:-15.0016,0,-24.9045	0/1:109:42,67:42:1508:67:2412:-180.174,0,-102.439	0/1:36:22,14:22:792:14:500:-33.939,0,-60.2851	0/1:37:22,15:22:784:15:540:-36.6425,0,-59.4868	0/0:115:115,0:115:4124:0:0:0,-34.6184,-369.521	0/0:67:67,0:67:2404:0:0:0,-20.169,-215.812	0/0:123:122,1:122:4330:1:32:0,-33.924,-383.905	0/1:88:54,34:54:1940:34:1220:-81.4371,0,-146.763	0/1:54:28,26:28:1008:26:932:-66.2774,0,-74.4078	0/0:165:165,0:165:5900:0:0:0,-49.6699,-526.534	0/1:5:3,2:3:108:2:72:-5.25622,0,-8.52739	0/0:98:98,0:98:3493:0:0:0,-29.5009,-313.484	0/0:31:31,0:31:1112:0:0:0,-9.33193,-99.9552	0/1:23:5,18:5:176:18:648:-50.9562,0,-9.21459	0/1:64:34,30:34:1212:30:1080:-76.5209,0,-89.4618	0/1:55:30,25:30:1072:25:896:-63.5441,0,-79.8529	0/1:4:1,3:1:36:3:108:-8.8015,0,-2.37465	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.5185	0/1:38:24,14:24:841:14:504:-33.4306,0,-64.1933	0/1:68:40,28:40:1428:28:1004:-69.2391,0,-107.453	1/1:1:0,1:0:0:1:36:-3.53612,-0.30103,0	0/0:125:125,0:125:4484:0:0:0,-37.6287,-399.843	0/1:127:60,67:60:2160:67:2408:-174.026,0,-154.914	0/1:60:28,32:28:1008:32:1148:-83.8046,0,-72.1514	0/0:53:53,0:53:1888:0:0:0,-15.9546,-169.064	0/1:145:79,66:79:2836:66:2360:-165.497,0,-210.629	0/1:77:24,53:24:856:53:1900:-145.639,0,-53.8239	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.8648	0/0:83:83,0:83:2980:0:0:0,-24.9855,-267.204	0/1:64:30,34:30:1072:34:1216:-89.4818,0,-76.7587	0/1:18:13,5:13:468:5:180:-10.9304,0,-36.8527	0/1:167:94,73:94:3380:73:2616:-180.892,0,-252.639	0/1:26:13,13:13:449:13:468:-34.0909,0,-32.7994	0/1:158:83,75:83:2980:75:2696:-187.121,0,-218.906	0/0:121:121,0:121:4348:0:0:0,-36.4246,-389.189	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.554	0/1:39:22,17:22:784:17:605:-41.8142,0,-58.6516	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9535	0/0:48:48,0:48:1720:0:0:0,-14.4494,-154.036	0/1:70:25,45:25:896:45:1612:-121.948,0,-59.4822	0/1:239:135,104:135:4848:104:3732:-258.82,0,-360.323	0/1:73:41,32:41:1468:32:1148:-80.4765,0,-109.76	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.3753	0/1:38:24,14:24:860:14:504:-33.7709,0,-66.0325	0/0:81:81,0:81:2892:0:0:0,-24.3834,-257.632	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.387	0/1:41:26,15:26:936:15:540:-35.9627,0,-71.7565	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.243	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.5927	0/1:51:33,18:33:1184:18:648:-42.3141,0,-90.793	0/1:19:7,12:7:252:12:432:-33.0489,0,-17.2119	0/0:67:67,0:67:2388:0:0:0,-20.169,-213.82	0/0:62:62,0:62:2228:0:0:0,-18.6639,-198.762
chr09	2289479	.	C	T	47619	PASS	AB=0.499379;ABP=3.02917;AC=58;AF=0.308511;AN=188;AO=2827;CIGAR=1X;DP=8833;DPB=8833;DPRA=1.27828;EPP=6141.76;EPPR=13031.8;GTI=0;LEN=1;MEANALT=1.0625;MQM=59.9052;MQMR=59.983;NS=94;NUMALT=1;ODDS=5.10547;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101194;QR=215077;RO=6000;RPL=0;RPP=6141.76;RPPR=13031.8;RPR=2827;RUN=1;SAF=2827;SAP=6141.76;SAR=0;SRF=6000;SRP=13031.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:33,27:33:1188:27:968:-69.3756,0,-89.1668	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536	0/0:144:144,0:144:5180:0:0:0,-43.3483,-466.337	0/0:157:156,1:156:5608:1:36:0,-43.6634,-501.241	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:46:22,24:22:792:24:860:-63.8745,0,-57.7583	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.479	0/1:149:66,83:66:2364:83:2980:-223.578,0,-168.165	0/1:110:53,56:53:1900:56:2004:-147.609,0,-138.253	0/1:65:32,33:32:1152:33:1180:-86.9411,0,-84.4232	0/1:56:30,26:30:1076:26:936:-67.7018,0,-80.2952	0/0:115:115,0:115:4127:0:0:0,-34.6184,-371.612	0/1:93:44,49:44:1576:49:1752:-129.968,0,-114.136	0/1:96:45,51:45:1612:51:1832:-136.262,0,-116.471	0/1:82:37,45:37:1332:45:1616:-121.045,0,-95.4979	0/1:96:41,55:41:1463:55:1976:-149.216,0,-103.066	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:140:86,54:86:3077:54:1936:-132.344,0,-235.012	0/1:128:58,70:58:2080:70:2493:-186.09,0,-148.938	0/1:62:16,46:16:576:46:1644:-129.577,0,-33.5111	0/0:94:94,0:94:3353:0:0:0,-28.2968,-301.986	0/1:50:25,25:25:896:25:900:-66.2695,0,-65.9089	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.246	0/1:221:124,97:124:4456:97:3461:-245.149,0,-334.681	0/1:275:141,134:141:5048:134:4816:-350.81,0,-371.682	0/1:33:19,14:19:680:14:504:-35.7503,0,-51.5952	0/1:186:80,106:80:2872:106:3804:-286.296,0,-202.725	0/1:146:75,71:75:2688:71:2548:-185.62,0,-198.214	0/1:81:41,40:41:1464:40:1436:-105.14,0,-107.673	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:214:112,102:112:4028:102:3660:-265.182,0,-298.286	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:82:45,37:45:1607:37:1324:-94.7776,0,-120.235	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:91:48,42:48:1716:42:1467:-105.013,0,-127.42	0/1:50:31,19:31:1108:19:684:-46.8388,0,-84.9795	0/1:208:107,99:107:3833:99:3556:-256.853,0,-282.792	0/1:57:29,28:29:1036:28:1008:-73.8776,0,-76.3952	0/1:46:23,23:23:824:23:824:-60.2067,0,-60.6359	0/0:106:106,0:106:3788:0:0:0,-31.9092,-341.119	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/0:187:186,1:186:6672:1:36:0,-52.6943,-596.956	0/1:83:39,44:39:1400:44:1555:-115.245,0,-101.314	0/1:156:74,82:74:2656:82:2940:-217.873,0,-192.325	0/0:125:125,0:125:4467:0:0:0,-37.6287,-402.2	0/1:19:4,15:4:144:15:540:-43.217,0,-7.59405	0/0:146:145,1:145:5212:1:36:0,-40.3521,-465.618	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:19:12,7:12:428:7:252:-17.3094,0,-33.1392	0/1:78:31,45:31:1108:45:1593:-120.403,0,-76.793	0/1:51:31,20:31:1108:20:708:-48.6931,0,-84.6785	0/1:13:9,4:9:305:4:144:-9.40023,0,-23.8632	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:104:56,48:56:2012:48:1707:-122.606,0,-150.046	0/1:115:68,47:68:2444:47:1692:-117.948,0,-185.596	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.995	0/1:174:94,80:94:3376:80:2872:-206.337,0,-251.675	0/1:91:61,30:61:2173:30:1068:-69.0383,0,-168.441	0/0:91:87,4:87:3097:4:144:0,-14.0801,-265.643	0/1:113:57,56:57:2036:56:1996:-145.884,0,-149.496	0/1:275:92,183:92:3289:183:6547:-506.515,0,-213.445	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:53:24,29:24:864:29:1040:-77.9598,0,-62.128	0/1:27:17,10:17:608:10:360:-24.6165,0,-46.9242	0/1:154:72,82:72:2568:82:2944:-218.8,0,-185.012	0/1:150:69,81:69:2480:81:2900:-216.081,0,-176.602	0/1:149:70,79:70:2508:79:2809:-208.195,0,-181.119	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:110:110,0:110:3960:0:0:0,-33.1133,-356.589	0/1:92:49,43:49:1745:43:1533:-110.566,0,-129.638	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:107:106,1:106:3800:1:36:0,-28.6119,-338.599	0/1:82:53,29:53:1900:29:1030:-68.3069,0,-146.593	0/1:234:127,107:127:4556:107:3821:-273.631,0,-339.764	0/1:60:38,22:38:1360:22:792:-53.5439,0,-104.638	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/1:42:27,15:27:972:15:540:-36.2933,0,-75.1546	0/0:136:133,3:133:4772:3:108:0,-30.8649,-419.561	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:75:48,27:48:1720:27:968:-64.8601,0,-132.508	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.786	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:146:73,73:73:2620:73:2618:-191.917,0,-192.097	0/1:81:24,57:24:855:57:2040:-159.444,0,-52.8867	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.088	0/0:128:128,0:128:4579:0:0:0,-38.5318,-412.275
chr09	2289524	.	AGGCGGCGGT	AGGCGGT,AGGCGGTGGT	321643	PASS	AB=0.510433,0.485321;ABP=18.8242,34.3108;AC=93,95;AF=0.494681,0.505319;AN=188;AO=8563,8384;CIGAR=1M3D6M,6M1X3M;DP=17018;DPB=14437.4;DPRA=0,0;EPP=18597.3,18208.6;EPPR=24.725;GTI=1;LEN=3,1;MEANALT=2.55319,2.55319;MQM=59.9716,59.9777;MQMR=60;NS=94;NUMALT=2;ODDS=47.4991;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.333333;PQA=9.33333,9.33333;PQR=9.33333;PRO=0.333333;QA=286973,297480;QR=356;RO=10;RPL=12,8383;RPP=18493.2,18200;RPPR=24.725;RPR=8551,1;RUN=1,1;SAF=12,8383;SAP=18493.2,18200;SAR=8551,1;SRF=10;SRP=24.725;SRR=0;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:83:0,25,58:0:0:25,58:823,2071:-235.709,-169.2,-161.675,-66.8463,0,-49.3865	1/2:208:0,95,113:0:0:95,113:3210,3978:-584.379,-324.194,-295.596,-260.529,0,-226.513	1/2:235:0,97,137:0:0:97,137:3212,4876:-657.159,-397.392,-368.192,-259.749,0,-218.508	1/2:290:0,136,152:0:0:136,152:4505,5411:-805.457,-441.105,-400.165,-364.437,0,-318.681	1/2:58:0,37,21:0:0:37,21:1237,743:-161.013,-60.8713,-49.7332,-100.489,0,-94.167	1/2:93:0,49,44:0:0:49,44:1646,1533:-258.342,-125.012,-110.261,-133.673,0,-120.427	1/2:282:0,178,103:0:0:178,103:6000,3620:-780.842,-294.638,-241.055,-486.19,0,-455.184	1/2:262:0,116,146:0:0:116,146:3941,5187:-742.647,-423.021,-388.101,-319.973,0,-276.022	1/2:235:0,133,100:0:0:133,100:4415,3547:-646.185,-289.024,-248.987,-357.195,0,-327.092	1/2:180:0,119,60:0:0:119,60:4005,2134:-498.375,-173.905,-138.083,-324.459,0,-306.397	1/2:136:0,80,56:0:0:80,56:2661,1975:-376.456,-161.164,-137.082,-215.636,0,-198.778	1/2:196:0,82,114:0:0:82,114:2705,4028:-547.066,-328.394,-303.709,-219.012,0,-184.695	1/2:169:0,78,91:0:0:78,91:2578,3235:-472.427,-263.979,-240.499,-208.79,0,-181.396	1/2:182:0,91,91:0:0:91,91:3024,3232:-508.366,-263.708,-236.314,-245.002,0,-217.608	1/2:144:0,67,77:0:0:67,77:2216,2743:-403.12,-223.933,-203.764,-179.53,0,-156.35	1/2:128:0,38,90:0:0:38,90:1278,3188:-363.582,-260.051,-248.612,-103.872,0,-76.7794	1/2:128:0,93,33:0:0:93,33:3027,1171:-339.729,-95.4032,-67.4074,-244.313,0,-234.379	1/2:131:0,83,48:0:0:83,48:2750,1711:-362.238,-139.826,-114.84,-222.759,0,-208.31	1/2:85:0,32,53:0:0:32,53:1046,1884:-238.351,-153.884,-144.251,-84.8044,0,-68.8498	1/2:345:0,206,138:0:0:206,138:6995,4914:-967.857,-400.57,-338.558,-567.335,0,-525.793	1/2:238:0,113,119:0:0:113,119:3751,4203:-645.759,-342.319,-308.303,-303.47,0,-267.647	1/2:184:0,125,59:0:0:125,59:4219,2093:-512.804,-170.877,-133.249,-342.275,0,-324.514	1/2:172:0,89,83:0:0:89,83:2983,2954:-482.674,-241.108,-214.316,-241.912,0,-216.927	1/2:184:0,132,51:0:0:132,51:4320,1832:-498.377,-149.468,-109.732,-348.919,0,-333.566	1/2:176:0,107,69:0:0:107,69:3579,2432:-488.08,-198.312,-166.101,-290.062,0,-269.291	1/2:459:0,246,210:0:0:246,210:8239,7475:-1276.44,-609.289,-535.236,-667.203,0,-603.986	1/2:522:0,253,268:0:0:253,268:8552,9496:-1466.79,-773.567,-697.406,-693.207,0,-612.531	1/2:71:1,39,31:1:36:39,31:1286,1083:-188.783,-85.1324,-76.3299,-100.995,0,-94.6012	1/2:415:0,237,176:0:0:237,176:8056,6229:-1160.63,-507.221,-435.877,-653.52,0,-600.539	1/2:239:0,107,132:0:0:107,132:3608,4683:-674.27,-381.896,-349.686,-292.718,0,-252.982	1/2:192:0,114,77:0:0:114,77:3839,2672:-528.232,-217.178,-182.861,-311.037,0,-287.858	1/2:19:0,8,11:0:0:8,11:275,387:-54.1828,-31.8546,-29.4464,-22.6752,0,-19.3639	1/2:23:0,7,16:0:0:7,16:244,576:-67.1988,-47.3585,-45.2513,-20.1922,0,-15.3757	1/2:14:0,5,9:0:0:5,9:172,324:-40.7598,-26.7966,-25.2914,-14.3128,0,-11.6036	1/2:25:0,10,15:0:0:10,15:336,523:-70.0977,-42.883,-39.8727,-27.5557,0,-23.0402	1/2:28:0,10,18:0:0:10,18:327,635:-78.4604,-52.0584,-49.0481,-26.738,0,-21.3195	1/2:440:0,241,198:0:0:241,198:8012,7042:-1222.16,-573.919,-501.371,-648.263,0,-588.659	1/2:125:0,66,58:0:0:66,58:2257,2076:-352.502,-169.33,-149.462,-183.201,0,-165.742	1/2:137:0,58,78:0:0:58,78:1956,2763:-383.578,-225.07,-207.61,-158.493,0,-135.013	1/2:9:0,7,2:0:0:7,2:248,72:-26.4331,-6.23466,-4.12745,-20.557,0,-19.9549	1/2:271:1,186,84:1:34:186,84:6211,2957:-740.456,-237.98,-184.747,-500.025,0,-477.496	1/2:90:0,42,48:0:0:42,48:1424,1679:-252.407,-136.943,-124.3,-115.808,0,-101.359	1/2:298:0,98,198:0:0:98,198:3296,7075:-843.87,-576.848,-547.347,-267.006,0,-207.403	1/2:145:1,90,54:1:34:90,54:2996,1914:-395.311,-153.182,-128.847,-239.678,0,-226.181	1/2:115:0,71,44:0:0:71,44:2334,1506:-311.187,-122.58,-101.207,-188.944,0,-175.699	1/2:153:1,56,96:1:36:56,96:1904,3409:-428.958,-274.829,-260.908,-151.479,0,-125.518	1/2:201:0,75,124:0:0:75,124:2498,4383:-559.112,-356.959,-334.381,-202.135,0,-164.807	1/2:339:0,160,179:0:0:160,179:5393,6351:-954.808,-517.795,-469.631,-437.358,0,-383.473	1/2:179:0,99,80:0:0:99,80:3335,2823:-500.43,-230.2,-200.398,-270.575,0,-246.493	1/2:286:0,135,151:0:0:135,151:4591,5415:-814.406,-442.023,-401.384,-372.732,0,-327.276	1/2:288:0,168,119:0:0:168,119:5689,4211:-804.214,-342.988,-292.415,-461.214,0,-425.392	1/2:29:0,10,19:0:0:10,19:339,684:-83.6519,-56.1708,-53.1605,-27.8272,0,-22.1076	1/2:243:0,102,138:0:0:102,138:3423,4918:-678.125,-400.883,-370.178,-277.239,0,-235.6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chr09	2304698	.	C	T	44498.6	PASS	AB=0.498778;ABP=3.07932;AC=57;AF=0.303191;AN=188;AO=2657;CIGAR=1X;DP=8616;DPB=8616;DPRA=1.21623;EPP=5763.93;EPPR=12938.5;GTI=0;LEN=1;MEANALT=1.01613;MQM=59.9936;MQMR=60;NS=94;NUMALT=1;ODDS=2.87787;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94675;QR=211757;RO=5957;RPL=2656;RPP=5763.93;RPPR=12938.5;RPR=1;RUN=1;SAF=2657;SAP=5772.61;SAR=0;SRF=5957;SRP=12938.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:17,22:17:595:22:778:-58.6025,0,-42.1365	0/0:105:104,0:104:3702:0:0:0,-31.3071,-333.023	0/0:144:144,0:144:5097:0:0:0,-43.3483,-458.876	0/0:253:253,0:253:9058:0:0:0,-76.1606,-815.195	0/1:58:32,26:32:1130:26:932:-66.7391,0,-84.5472	0/1:59:32,27:32:1148:27:964:-69.3161,0,-85.8691	0/0:120:120,0:120:4289:0:0:0,-36.1236,-386.186	0/1:106:56,50:56:1996:50:1781:-128.663,0,-148.005	0/1:54:32,22:32:1098:22:792:-55.3501,0,-82.8635	0/1:106:56,50:56:1981:50:1787:-129.204,0,-146.654	0/1:31:18,13:18:640:13:459:-32.3122,0,-48.5974	0/0:69:69,0:69:2442:0:0:0,-20.7711,-220.035	0/1:41:22,19:22:792:19:676:-48.8258,0,-59.2634	0/1:33:16,17:16:572:17:612:-45.4794,0,-41.8794	0/1:53:29,24:29:1036:24:852:-61.0444,0,-77.5993	0/1:46:11,35:11:392:35:1248:-98.7775,0,-21.7727	0/1:59:29,30:29:1032:30:1064:-78.3109,0,-75.4327	0/0:50:50,0:50:1759:0:0:0,-15.0515,-158.59	0/0:33:33,0:33:1157:0:0:0,-9.93399,-104.434	0/1:170:90,80:90:3224:80:2872:-207.541,0,-239.207	0/1:147:84,63:84:2960:63:2245:-158.06,0,-222.38	0/1:122:41,81:41:1451:81:2900:-224.51,0,-94.1595	0/0:123:122,1:122:4351:1:36:0,-33.4284,-388.168	0/1:94:55,39:55:1980:39:1400:-98.0024,0,-150.178	0/0:57:57,0:57:2027:0:0:0,-17.1587,-182.702	0/1:367:176,191:176:6234:191:6815:-502.944,0,-450.677	0/1:165:81,84:81:2908:84:2981:-218.852,0,-212.285	0/1:31:16,15:16:576:15:528:-38.5194,0,-42.8431	0/1:323:158,165:158:5613:165:5879:-431.989,0,-408.06	0/1:118:62,56:62:2183:56:2008:-145.472,0,-161.212	0/1:120:62,58:62:2219:58:2065:-149.996,0,-163.85	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:169:85,84:85:3007:84:2984:-217.919,0,-219.986	0/0:205:204,1:204:7244:1:36:0,-58.1129,-648.42	0/1:41:21,20:21:741:20:712:-52.0644,0,-54.6694	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:215:91,124:91:3251:124:4433:-334.419,0,-228.089	0/1:31:16,15:16:568:15:540:-39.6046,0,-42.1199	0/1:134:52,82:52:1855:82:2931:-223.686,0,-126.891	0/1:42:12,30:12:432:30:1072:-84.1492,0,-26.5779	0/1:62:32,30:32:1131:30:1060:-77.0474,0,-83.4339	0/0:119:119,0:119:4234:0:0:0,-35.8226,-381.238	0/0:113:113,0:113:4026:0:0:0,-34.0164,-362.526	0/0:190:190,0:190:6699:0:0:0,-57.1957,-602.986	0/1:140:77,63:77:2713:63:2213:-157.288,0,-202.267	0/1:142:72,70:72:2570:70:2497:-182.235,0,-188.802	0/0:178:178,0:178:6360:0:0:0,-53.5833,-572.489	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:116:115,1:115:4117:1:36:0,-31.3212,-367.114	0/0:73:73,0:73:2594:0:0:0,-21.9752,-233.708	0/1:13:5,8:5:171:8:284:-21.99,0,-11.8121	0/1:119:79,40:79:2819:40:1432:-93.355,0,-218.127	0/1:63:36,27:36:1284:27:972:-68.833,0,-96.8985	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:66:42,24:42:1495:24:860:-57.8539,0,-114.976	0/1:91:50,41:50:1796:41:1468:-105.022,0,-134.529	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:200:199,1:199:7103:1:36:0,-56.6077,-635.728	0/1:176:93,83:93:3326:83:2947:-212.482,0,-246.575	0/1:71:41,30:41:1451:30:1072:-75.4193,0,-109.512	0/0:95:95,0:95:3358:0:0:0,-28.5978,-302.434	0/1:167:78,88:78:2777:88:3132:-231.921,0,-199.987	0/1:121:51,70:51:1805:70:2497:-188.558,0,-126.305	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:95:95,0:95:3372:0:0:0,-28.5978,-303.696	0/1:83:43,40:43:1540:40:1440:-104.912,0,-113.908	0/1:17:11,6:11:396:6:212:-14.3073,0,-30.8652	0/1:78:47,31:47:1675:31:1101:-75.918,0,-127.556	0/1:65:35,30:35:1234:30:1072:-77.2255,0,-91.7957	0/1:114:51,63:51:1780:63:2223:-166.007,0,-126.16	0/0:156:156,0:156:5568:0:0:0,-46.9607,-501.243	0/0:151:151,0:151:5359:0:0:0,-45.4555,-482.442	0/1:98:44,54:44:1563:54:1912:-142.856,0,-111.46	0/0:22:22,0:22:768:0:0:0,-6.62266,-69.4376	0/0:88:87,1:87:3093:1:36:0,-22.8924,-274.999	0/1:123:65,58:65:2319:58:2060:-148.642,0,-171.943	0/1:147:88,59:88:3141:59:2116:-146.457,0,-238.663	0/1:103:50,53:50:1777:53:1871:-137.662,0,-129.205	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:67:31,36:31:1062:36:1280:-95.3337,0,-75.7137	0/0:114:114,0:114:3997:0:0:0,-34.3174,-359.921	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:61:25,36:25:885:36:1284:-97.5006,0,-61.6037	0/0:45:45,0:45:1586:0:0:0,-13.5463,-143.029	0/0:43:43,0:43:1520:0:0:0,-12.9443,-137.093	0/1:60:28,32:28:988:32:1127:-83.6748,0,-71.1721	0/1:76:28,48:28:983:48:1693:-129.777,0,-65.9043	0/0:116:116,0:116:4148:0:0:0,-34.9195,-373.504	0/0:77:77,0:77:2747:0:0:0,-23.1793,-247.472
chr09	2324756	.	C	A	74898.8	PASS	AB=0.544075;ABP=60.8174;AC=120;AF=0.645161;AN=186;AO=3749;CIGAR=1X;DP=5343;DPB=5343;DPRA=17.7767;EPP=8143.86;EPPR=3464.34;GTI=3;LEN=1;MEANALT=1;MQM=59.9896;MQMR=59.9661;NS=93;NUMALT=1;ODDS=0.0412204;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133891;QR=57067;RO=1594;RPL=0;RPP=8143.86;RPPR=3464.34;RPR=3749;RUN=1;SAF=3749;SAP=8143.86;SAR=0;SRF=1594;SRP=3464.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:20,23:20:708:23:828:-61.8998,0,-51.0995	1/1:51:0,51:0:0:51:1794:-161.736,-15.3525,0	1/1:75:0,75:0:0:75:2658:-239.464,-22.5773,0	1/1:166:1,165:1:36:165:5898:-527.329,-46.3727,0	0/1:28:8,20:8:288:20:705:-55.3439,0,-17.8386	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:50:18,32:18:640:32:1148:-88.5783,0,-42.8778	0/1:76:32,44:32:1144:44:1576:-119.253,0,-80.388	0/1:75:38,37:38:1364:37:1332:-97.6051,0,-100.483	0/1:29:24,5:24:864:5:180:-7.82219,0,-69.3527	1/1:82:2,80:2:72:80:2876:-252.239,-17.8477,0	0/1:66:30,36:30:1076:36:1281:-95.7233,0,-77.2849	0/1:58:39,19:39:1387:19:684:-44.4306,0,-107.668	0/1:58:27,31:27:968:31:1097:-81.5783,0,-69.9753	0/1:55:31,24:31:1116:24:845:-59.8104,0,-84.195	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:22:3,19:3:108:19:684:-55.2677,0,-3.45251	0/1:67:34,33:34:1220:33:1188:-87.0596,0,-89.9378	0/1:140:74,66:74:2660:66:2357:-170.243,0,-197.456	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	1/1:79:2,77:2:68:77:2749:-241.193,-17.3237,0	0/1:53:26,27:26:936:27:957:-70.4893,0,-68.6033	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:141:35,106:35:1256:106:3793:-299.121,0,-70.9001	0/1:144:78,66:78:2792:66:2376:-170.749,0,-208.172	0/1:23:10,13:10:347:13:468:-35.536,0,-24.6399	0/1:120:31,89:31:1108:89:3155:-248.048,0,-63.9074	0/1:70:23,47:23:809:47:1664:-128.973,0,-52.0562	0/1:61:29,32:29:1040:32:1152:-85.6273,0,-75.5515	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.439	1/1:18:1,17:1:36:17:582:-49.1005,-1.82027,0	0/1:173:93,80:93:3336:80:2880:-207.357,0,-248.379	1/1:54:1,53:1:36:53:1878:-164.759,-12.6573,0	0/1:31:17,14:17:612:14:504:-36.3662,0,-46.0815	.:.:.:.:.:.:.:.	0/1:114:40,74:40:1440:74:2651:-204.519,0,-95.5803	0/1:26:12,14:12:432:14:500:-37.5094,0,-31.3944	0/1:42:27,15:27:964:15:540:-36.2933,0,-74.4336	0/1:55:37,18:37:1320:18:629:-40.3771,0,-102.545	0/1:46:21,25:21:731:25:896:-67.113,0,-52.2631	1/1:50:3,47:3:108:47:1680:-141.411,-4.97633,0	0/1:42:5,37:5:180:37:1309:-105.466,0,-3.9088	1/1:79:1,78:1:32:78:2789:-248.049,-20.5821,0	0/1:75:29,46:29:1040:46:1656:-126.751,0,-71.3348	0/1:64:22,42:22:792:42:1474:-113.685,0,-52.3398	1/1:71:1,70:1:36:70:2504:-222.014,-17.7749,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:64:0,64:0:0:64:2289:-206.27,-19.2659,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:78:38,40:38:1360:40:1440:-106.417,0,-99.2203	0/1:15:8,7:8:284:7:248:-18.1487,0,-21.3879	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:2,9:2:72:9:309:-24.8294,0,-3.52539	0/1:34:10,24:10:345:24:864:-67.8475,0,-21.1458	0/1:85:41,44:41:1476:44:1554:-114.56,0,-107.549	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:145:0,145:0:0:145:5144:-463.1,-43.6494,0	0/1:72:27,45:27:968:45:1606:-123.155,0,-65.7609	0/1:43:21,22:21:756:22:779:-57.487,0,-55.4229	1/1:37:1,36:1:36:36:1292:-112.985,-7.53984,0	0/1:90:38,52:38:1360:52:1860:-140.587,0,-95.6079	0/1:79:33,46:33:1180:46:1645:-124.557,0,-82.7267	1/1:23:1,22:1:36:22:777:-66.6521,-3.32542,0	1/1:47:0,47:0:0:47:1673:-150.855,-14.1484,0	0/1:39:21,18:21:756:18:648:-46.9117,0,-56.6271	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	0/1:91:23,68:23:820:68:2425:-191.111,0,-46.7288	0/1:50:32,18:32:1152:18:644:-43.2391,0,-88.9386	0/1:64:29,35:29:1040:35:1256:-94.0794,0,-74.6484	1/1:120:2,118:2:72:118:4202:-371.523,-29.2869,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:58:17,41:17:604:41:1476:-115.676,0,-37.2171	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:43:0,43:0:0:43:1529:-137.901,-12.9443,0	0/1:39:18,21:18:644:21:756:-56.6271,0,-46.5504	0/1:89:49,40:49:1737:40:1425:-101.754,0,-129.821	0/1:35:19,16:19:684:16:572:-41.2774,0,-51.3543	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:46:24,22:24:856:22:792:-57.7583,0,-63.5137	1/1:124:3,121:3:108:121:4318:-378.721,-27.2526,0	1/1:24:1,23:1:36:23:828:-71.2458,-3.62645,0	0/1:72:48,24:48:1728:24:864:-56.4084,0,-134.131	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:17:1,16:1:36:16:576:-48.5767,-1.51924,0	0/1:85:35,50:35:1260:50:1800:-136.695,0,-88.1179	0/1:68:41,27:41:1463:27:968:-66.9673,0,-111.495	1/1:149:1,148:1:36:148:5279:-471.644,-41.2552,0	1/1:93:0,93:0:0:93:3300:-297.219,-27.9958,0
chr09	2324767	.	A	G	22243.3	PASS	AB=0.434769;ABP=123.127;AC=54;AF=0.290323;AN=186;AO=1415;CIGAR=1X;DP=5260;DPB=5260;DPRA=1.38482;EPP=3075.64;EPPR=8332.79;GTI=2;LEN=1;MEANALT=1.01786;MQM=59.9604;MQMR=59.9883;NS=93;NUMALT=1;ODDS=1.05795;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50500;QR=137094;RO=3844;RPL=0;RPP=3075.64;RPPR=8332.79;RPR=1415;RUN=1;SAF=1415;SAP=3075.64;SAR=0;SRF=3844;SRP=8350.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:27,15:27:964:15:536:-35.9316,0,-74.4289	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.209	0/0:72:72,0:72:2512:0:0:0,-21.6742,-226.328	0/0:166:165,1:165:5924:1:36:0,-46.3727,-529.668	0/1:28:22,6:22:788:6:216:-11.3617,0,-62.816	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:47:31,16:31:1089:16:567:-37.2123,0,-84.1689	0/1:74:45,29:45:1620:29:1026:-70.3748,0,-123.814	0/1:75:40,35:40:1428:35:1260:-91.1282,0,-106.24	0/1:28:9,19:9:324:19:671:-52.287,0,-21.077	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:64:34,30:34:1220:30:1080:-78.2473,0,-90.8409	0/1:58:19,39:19:680:39:1383:-107.308,0,-44.0694	0/1:57:31,26:31:1112:26:932:-67.0378,0,-83.2326	0/1:56:26,30:26:936:30:1056:-78.4904,0,-67.7018	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:65:37,28:37:1332:28:1004:-71.1089,0,-100.615	0/1:143:71,72:71:2525:72:2572:-188.638,0,-184.453	0/1:20:18,2:18:640:2:72:-0.816123,0,-51.9087	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.062	0/1:51:25,26:25:896:26:932:-68.8448,0,-65.6078	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:136:102,34:102:3611:34:1203:-67.635,0,-284.254	0/1:143:68,75:68:2409:75:2665:-197.048,0,-174.018	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/1:118:86,31:86:3088:31:1103:-64.1439,0,-242.715	0/1:68:49,19:49:1726:19:680:-41.0591,0,-135.151	0/1:61:34,27:34:1216:27:960:-68.3529,0,-91.3837	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:168:79,89:79:2836:89:3192:-236.93,0,-204.905	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.022	0/1:31:18,13:18:644:13:459:-32.3122,0,-48.9587	.:.:.:.:.:.:.:.	0/1:114:73,41:73:2601:41:1468:-98.0987,0,-200.02	0/1:24:15,9:15:536:9:313:-21.2804,0,-41.3501	0/1:39:16,23:16:553:23:795:-60.1247,0,-38.3538	0/1:53:20,33:20:716:33:1184:-90.9137,0,-48.8131	0/1:45:26,19:26:936:19:675:-47.5306,0,-71.0131	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.465	0/0:78:78,0:78:2758:0:0:0,-23.4803,-248.46	0/1:73:45,28:45:1616:28:969:-65.5423,0,-123.755	0/1:62:42,20:42:1474:20:716:-46.1039,0,-114.287	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.392	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:76:39,37:39:1381:37:1327:-96.854,0,-101.708	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:33:24,9:24:845:9:324:-19.5719,0,-66.4331	0/1:84:44,40:44:1584:40:1440:-104.611,0,-117.565	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:144:144,0:144:5092:0:0:0,-43.3483,-458.423	0/1:70:45,25:45:1620:25:885:-58.8921,0,-125.018	0/1:43:24,19:24:860:19:661:-46.8673,0,-64.7775	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/1:89:55,34:55:1972:34:1220:-83.3151,0,-150.963	0/1:80:46,34:46:1652:34:1220:-86.0244,0,-124.886	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:40:20,20:20:712:20:715:-52.6363,0,-52.3655	0/1:14:11,3:11:388:3:108:-5.86075,0,-31.0429	0/1:90:67,23:67:2362:23:820:-47.0298,0,-185.743	0/1:49:18,31:18:648:31:1116:-86.0012,0,-43.9014	0/1:62:34,28:34:1209:28:1000:-71.6515,0,-90.4503	0/0:119:119,0:119:4249:0:0:0,-35.8226,-382.588	0/0:22:22,0:22:758:0:0:0,-6.62266,-68.5342	0/1:55:39,16:39:1400:16:572:-35.243,0,-109.743	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:37:23,14:23:828:14:500:-34.1981,0,-63.706	0/1:88:43,45:43:1514:45:1620:-119.599,0,-110.058	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:45:22,23:22:792:23:828:-61.2978,0,-58.0593	0/0:123:123,0:123:4405:0:0:0,-37.0267,-396.62	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:73:24,49:24:864:49:1764:-137.06,0,-56.1074	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:84:51,33:51:1832:33:1188:-81.9421,0,-139.874	0/1:66:27,39:27:968:39:1383:-104.9,0,-67.5694	0/0:145:144,1:144:5101:1:36:0,-40.0511,-455.632	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218
chr09	2324794	.	T	C	22198.3	PASS	AB=0.436386;ABP=117.387;AC=54;AF=0.290323;AN=186;AO=1422;CIGAR=1X;DP=5269;DPB=5269;DPRA=1.28524;EPP=3090.84;EPPR=8347.98;GTI=2;LEN=1;MEANALT=1;MQM=59.9838;MQMR=59.999;NS=93;NUMALT=1;ODDS=0.950133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50540;QR=137624;RO=3847;RPL=1422;RPP=3090.84;RPPR=8347.98;RPR=0;RUN=1;SAF=1422;SAP=3090.84;SAR=0;SRF=3847;SRP=8356.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:26,15:26:924:15:527:-35.418,0,-71.1354	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.397	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:164:164,0:164:5884:0:0:0,-49.3689,-529.669	0/1:28:22,6:22:788:6:208:-10.6302,0,-62.816	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/1:50:32,18:32:1152:18:639:-42.7867,0,-88.9386	0/1:76:46,30:46:1614:30:1063:-73.0993,0,-122.667	0/1:74:38,36:38:1353:36:1288:-93.9468,0,-99.7922	0/1:28:8,20:8:284:20:711:-55.8868,0,-17.4745	0/0:81:81,0:81:2884:0:0:0,-24.3834,-259.795	0/1:65:35,30:35:1251:30:1052:-75.4208,0,-93.3273	0/1:58:19,39:19:684:39:1349:-104.244,0,-44.4306	0/1:58:31,27:31:1112:27:972:-70.3358,0,-82.9316	0/1:56:26,30:26:928:30:1057:-78.5813,0,-66.9806	0/1:25:13,12:13:468:12:428:-31.3331,0,-34.9339	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:67:39,28:39:1373:28:1000:-70.1464,0,-103.698	0/1:140:70,70:70:2516:70:2511:-184.097,0,-184.547	0/1:18:16,2:16:564:2:72:-1.41818,0,-45.6718	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:51:26,25:26:936:25:882:-64.3425,0,-69.2069	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.453	0/1:138:104,34:104:3736:34:1218:-68.3843,0,-294.897	0/1:142:67,75:67:2412:75:2657:-196.629,0,-174.59	0/1:23:13,10:13:464:10:347:-24.6399,0,-35.1738	0/1:117:86,31:86:3054:31:1097:-63.8175,0,-239.867	0/1:70:49,21:49:1752:21:748:-46.5732,0,-136.892	0/1:60:33,27:33:1179:27:950:-67.7516,0,-88.3554	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:169:79,90:79:2825:90:3226:-239.688,0,-203.613	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:30:18,12:18:633:12:428:-29.8279,0,-48.2642	.:.:.:.:.:.:.:.	0/1:112:72,40:72:2588:40:1427:-95.0114,0,-199.453	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0491	0/1:42:16,26:16:561:26:923:-70.7435,0,-38.1739	0/1:52:20,32:20:712:32:1152:-88.3366,0,-48.7531	0/1:44:26,18:26:919:18:619:-42.7859,0,-69.7808	0/0:48:48,0:48:1719:0:0:0,-14.4494,-154.995	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:78:77,1:77:2755:1:36:0,-19.8821,-244.593	0/1:73:44,29:44:1561:29:1021:-70.2227,0,-118.804	0/1:63:41,22:41:1437:22:792:-52.6408,0,-110.656	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:16:10,6:10:360:6:212:-14.6083,0,-27.9278	0/1:76:39,37:39:1389:37:1320:-96.2237,0,-102.429	0/1:16:10,6:10:356:6:212:-14.6083,0,-27.5648	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:33:23,10:23:824:10:351:-21.9927,0,-64.5493	0/1:84:44,40:44:1584:40:1440:-104.611,0,-117.565	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:145:145,0:145:5197:0:0:0,-43.6493,-467.866	0/1:70:45,25:45:1620:25:887:-59.0737,0,-125.018	0/1:41:23,18:23:828:18:648:-46.3097,0,-62.5019	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:92:56,36:56:1988:36:1269:-86.8158,0,-151.497	0/1:79:45,34:45:1612:34:1224:-86.6857,0,-121.589	0/0:23:23,0:23:804:0:0:0,-6.92369,-72.6766	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:40:20,20:20:699:20:703:-51.5523,0,-51.1913	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/1:90:68,22:68:2427:22:788:-44.1521,0,-191.593	0/1:50:18,32:18:648:32:1133:-87.2252,0,-43.6004	0/1:62:34,28:34:1207:28:1000:-71.6515,0,-90.2714	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.895	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:55:41,14:41:1468:14:500:-28.7795,0,-115.859	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:37:22,15:22:788:15:532:-37.075,0,-60.1067	0/1:88:43,45:43:1540:45:1599:-117.708,0,-112.402	0/1:34:17,17:17:612:17:608:-44.817,0,-45.1784	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:45:22,23:22:792:23:824:-60.937,0,-58.0593	0/0:123:123,0:123:4397:0:0:0,-37.0267,-395.902	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:71:24,47:24:860:47:1672:-129.394,0,-56.3487	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/1:84:52,32:52:1859:32:1107:-74.6466,0,-142.302	0/1:67:27,40:27:960:40:1427:-108.558,0,-66.5473	0/0:148:147,1:147:5271:1:36:0,-40.9542,-470.926	0/0:90:90,0:90:3227:0:0:0,-27.0927,-290.651
chr09	2324846	.	G	A	51355.1	PASS	AB=0.552941;ABP=110.613;AC=56;AF=0.297872;AN=188;AO=2447;CIGAR=1X;DP=6695;DPB=6695;DPRA=1.42033;EPP=2516.57;EPPR=9214.4;GTI=3;LEN=1;MEANALT=1.01724;MQM=59.9219;MQMR=59.9769;NS=94;NUMALT=1;ODDS=3.54415;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87186;QR=148849;RO=4246;RPL=2;RPP=5299.25;RPPR=9223.08;RPR=2445;RUN=1;SAF=384;SAP=2504.63;SAR=2063;SRF=1;SRP=9214.4;SRR=4245;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:4,33:4:144:33:1176:-94.8487,0,-2.17551	0/0:75:75,0:75:2644:0:0:0,-22.5772,-238.209	0/0:73:73,0:73:2576:0:0:0,-21.9752,-231.901	0/0:115:115,0:115:4010:0:0:0,-34.6184,-361.094	0/1:59:11,48:11:396:48:1712:-136.605,0,-18.222	0/1:50:14,36:14:500:36:1280:-100.452,0,-30.2847	0/0:99:99,0:99:3450:0:0:0,-29.802,-310.717	0/1:102:34,68:34:1208:68:2432:-188.428,0,-78.321	0/1:50:16,34:16:564:34:1212:-94.3348,0,-36.0388	0/1:80:35,45:35:1217:45:1595:-119.757,0,-85.7486	0/1:58:27,31:27:951:31:1108:-82.5713,0,-68.4446	0/0:68:68,0:68:2388:0:0:0,-20.47,-215.179	0/1:68:33,35:33:1180:35:1252:-92.515,0,-86.038	0/1:88:38,50:38:1326:50:1780:-133.992,0,-93.1404	0/1:51:28,23:28:985:23:824:-59.1308,0,-73.609	0/1:54:23,31:23:809:31:1099:-82.9638,0,-56.8727	0/1:64:22,42:22:776:42:1508:-116.749,0,-50.8962	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.499	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:131:39,91:39:1349:91:3251:-253.315,0,-82.2124	0/1:127:78,49:78:2754:49:1713:-116.22,0,-209.872	0/1:60:21,39:21:741:39:1391:-107.424,0,-48.9498	0/0:76:75,0:75:2645:0:0:0,-22.5772,-237.937	0/1:67:30,37:30:1042:37:1315:-98.482,0,-73.919	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:164:81,83:81:2863:83:2925:-214.113,0,-208.538	0/1:130:48,82:48:1659:82:2922:-224.08,0,-110.46	0/1:39:14,25:14:491:25:888:-68.4989,0,-32.7809	0/1:164:90,74:90:3139:74:2644:-188.837,0,-233.37	0/1:112:72,40:72:2564:40:1432:-95.4576,0,-197.295	0/1:74:32,42:32:1117:42:1504:-113.378,0,-78.5592	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:29:29,0:29:1016:0:0:0,-8.72987,-91.7517	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/0:20:20,0:20:700:0:0:0,-6.0206,-63.3235	0/1:147:65,82:65:2259:82:2917:-218.513,0,-159.32	0/0:68:68,0:68:2393:0:0:0,-20.47,-215.627	0/1:60:21,39:21:740:39:1400:-108.237,0,-48.8616	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:111:39,72:39:1352:72:2531:-194.626,0,-88.561	0/1:25:13,12:13:464:12:432:-31.6954,0,-34.5718	0/1:101:25,76:25:883:76:2728:-215.078,0,-49.3834	0/1:61:27,34:27:941:34:1220:-91.744,0,-66.6389	0/1:49:23,26:23:789:26:936:-69.809,0,-56.5733	0/0:59:59,0:59:2094:0:0:0,-17.7608,-188.729	0/0:49:49,0:49:1732:0:0:0,-14.7505,-156.165	0/0:95:94,1:94:3289:1:36:0,-24.9996,-292.632	0/1:84:37,47:37:1285:47:1664:-124.758,0,-90.6619	0/1:117:75,42:75:2636:42:1485:-98.7173,0,-202.267	0/0:88:88,0:88:3087:0:0:0,-26.4906,-278.059	0/1:6:5,1:5:172:1:36:-1.79209,0,-14.0118	0/0:56:56,0:56:1988:0:0:0,-16.8577,-179.194	0/0:47:47,0:47:1633:0:0:0,-14.1484,-147.253	0/1:21:15,6:15:528:6:216:-13.4689,0,-41.5297	0/1:78:40,38:40:1384:38:1359:-99.1295,0,-101.374	0/1:50:15,35:15:528:35:1256:-98.2932,0,-32.7999	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:27:27,0:27:908:0:0:0,-8.12781,-82.0235	0/1:101:47,54:47:1648:54:1932:-143.753,0,-118.201	0/1:106:56,50:56:1965:50:1788:-129.293,0,-145.214	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:171:171,0:171:5989:0:0:0,-51.4761,-539.115	0/1:101:44,57:44:1519:57:2030:-152.482,0,-106.594	0/1:58:33,25:33:1176:25:862:-60.431,0,-88.688	0/0:29:29,0:29:1011:0:0:0,-8.72987,-91.3004	0/1:128:57,71:57:1947:71:2515:-188.068,0,-136.969	0/1:112:34,78:34:1189:78:2796:-218.165,0,-73.5973	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.419	0/1:76:44,32:44:1545:32:1140:-80.0309,0,-116.461	0/1:16:12,4:12:428:4:144:-8.49714,0,-34.0423	0/1:72:29,43:29:1024:43:1528:-116.137,0,-70.7984	0/1:78:34,44:34:1216:44:1576:-118.651,0,-86.076	0/1:137:63,74:63:2218:74:2639:-196.509,0,-158.643	0/0:152:152,0:152:5321:0:0:0,-45.7566,-479.034	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.073	0/1:82:44,38:44:1544:38:1360:-98.0161,0,-114.565	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:82:82,0:82:2874:0:0:0,-24.6845,-258.895	0/1:88:41,47:41:1448:47:1672:-124.277,0,-104.125	0/1:135:65,70:65:2242:70:2481:-182.903,0,-161.403	0/1:58:33,25:33:1172:25:896:-63.5006,0,-88.3278	0/0:68:68,0:68:2381:0:0:0,-20.47,-214.548	0/1:52:25,27:25:879:27:968:-71.7554,0,-63.7732	0/0:144:142,2:142:4929:2:72:0,-36.5116,-436.929	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:57:26,31:26:900:31:1100:-82.1516,0,-64.1553	0/0:44:44,0:44:1556:0:0:0,-13.2453,-140.332	0/0:57:57,0:57:1963:0:0:0,-17.1587,-176.943	0/1:142:68,74:68:2370:74:2648:-195.82,0,-170.809	0/1:65:16,49:16:554:49:1752:-138.397,0,-30.618	0/0:119:119,0:119:4154:0:0:0,-35.8226,-374.048	0/0:90:90,0:90:3141:0:0:0,-27.0927,-282.917
chr09	2324875	.	C	T	82271.3	PASS	AB=0.438796;ABP=152.128;AC=125;AF=0.664894;AN=188;AO=4202;CIGAR=1X;DP=6811;DPB=6811;DPRA=10.4516;EPP=9040.89;EPPR=5601.23;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9505;MQMR=59.954;NS=94;NUMALT=1;ODDS=0.305352;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149987;QR=93078;RO=2606;RPL=10;RPP=9040.89;RPPR=2824.09;RPR=4192;RUN=1;SAF=0;SAP=9127.54;SAR=4202;SRF=376;SRP=2867.18;SRR=2230;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:34,5:34:1216:5:180:-4.8119,0,-98.004	1/1:79:2,77:2:72:77:2747:-240.634,-16.9446,0	1/1:74:0,74:0:0:74:2628:-236.751,-22.2762,0	1/1:121:1,120:1:36:120:4259:-379.888,-32.8264,0	0/1:61:53,8:53:1889:8:288:-7.90458,0,-151.924	0/1:48:36,12:36:1288:12:432:-24.7718,0,-101.774	1/1:99:0,99:0:0:99:3509:-316.018,-29.802,0	0/1:102:69,33:69:2471:33:1158:-73.8175,0,-191.938	0/1:51:35,16:35:1248:16:576:-36.8225,0,-97.2723	0/1:81:44,37:44:1572:37:1313:-94.0807,0,-117.388	0/1:57:30,27:30:1080:27:964:-69.9181,0,-80.3545	1/1:68:0,68:0:0:68:2417:-217.785,-20.47,0	0/1:73:36,37:36:1292:37:1324:-97.4869,0,-94.6086	0/1:89:51,38:51:1832:38:1345:-94.5519,0,-138.369	0/1:51:23,28:23:824:28:999:-74.8726,0,-59.1308	0/1:57:34,23:34:1220:23:828:-57.6854,0,-92.9481	0/1:67:43,24:43:1548:24:860:-57.5528,0,-119.444	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:133:93,39:93:3317:39:1396:-85.931,0,-258.741	0/1:129:51,78:51:1815:78:2792:-212.688,0,-124.798	0/1:62:42,20:42:1495:20:712:-45.7327,0,-116.178	1/1:76:1,75:1:36:75:2700:-239.645,-19.28,0	0/1:68:37,31:37:1324:31:1112:-79.9213,0,-98.9921	0/1:17:2,15:2:72:15:536:-43.4573,0,-1.71921	0/1:166:85,81:85:3036:81:2858:-207.485,0,-223.499	0/1:133:90,43:90:3223:43:1548:-99.5761,0,-250.254	0/1:39:26,13:26:917:13:468:-30.7195,0,-71.1044	0/1:162:75,87:75:2696:87:3124:-232.619,0,-194.117	0/1:116:43,73:43:1516:73:2603:-199.595,0,-101.806	0/1:74:43,31:43:1544:31:1116:-78.4731,0,-116.977	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:31:10,21:10:360:21:756:-59.0353,0,-23.4124	0/1:16:7,9:7:237:9:320:-24.3259,0,-16.8426	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:148:84,64:84:2997:64:2300:-162.708,0,-225.408	1/1:68:0,68:0:0:68:2440:-219.854,-20.47,0	0/1:62:40,22:40:1431:22:792:-52.9418,0,-110.423	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:115:76,39:76:2711:39:1378:-89.6993,0,-209.615	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/1:101:78,23:78:2758:23:824:-44.0793,0,-217.883	0/1:63:35,28:35:1252:28:1004:-71.711,0,-94.0202	0/1:48:25,23:25:896:23:828:-60.3923,0,-66.5109	1/1:61:2,59:2:72:59:2112:-183.512,-11.5261,0	1/1:52:2,50:2:72:50:1785:-154.094,-8.81684,0	1/1:100:1,99:1:36:99:3525:-313.839,-26.5047,0	0/1:87:49,38:49:1752:38:1348:-95.4293,0,-131.775	0/1:118:42,75:42:1503:75:2684:-206.264,0,-100.02	1/1:89:1,88:1:21:88:3132:-280.007,-24.6917,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:49:4,45:4:144:45:1620:-132.774,-1.43685,0	0/1:24:18,6:18:640:6:216:-12.5658,0,-50.703	0/1:80:40,40:40:1436:40:1432:-105.095,0,-105.455	0/1:49:32,16:32:1139:16:557:-35.647,0,-88.0092	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:28:1,27:1:36:27:949:-82.1245,-4.83057,0	0/1:104:57,47:57:2040:47:1676:-119.82,0,-152.565	0/1:111:52,59:52:1864:59:2112:-156.935,0,-134.625	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:172:0,172:0:0:172:6140:-552.693,-51.7772,0	0/1:105:62,43:62:2212:43:1525:-105.933,0,-167.7	0/1:59:28,31:28:1004:31:1100:-81.5495,0,-72.9151	0/1:32:3,29:3:108:29:1036:-83.9104,0,-0.44221	0/1:128:72,56:72:2557:56:2001:-141.83,0,-191.848	0/1:116:79,37:79:2813:37:1328:-84.8982,0,-218.489	1/1:30:1,29:1:36:29:1040:-90.3161,-5.43263,0	1/1:34:1,33:1:36:33:1182:-103.085,-6.63675,0	0/1:75:33,42:33:1173:42:1508:-113.437,0,-83.2983	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:72:44,28:44:1572:28:989:-67.6479,0,-120.093	0/1:79:44,35:44:1552:35:1245:-88.5486,0,-116.188	0/1:137:79,58:79:2836:58:2053:-143.799,0,-214.23	1/1:154:3,151:3:108:151:5359:-472.367,-36.2835,0	1/1:58:0,58:0:0:58:2073:-186.825,-17.4597,0	0/1:85:39,46:39:1396:46:1647:-122.928,0,-100.352	1/1:32:2,30:2:72:30:1080:-90.6765,-2.79624,0	1/1:82:3,79:3:108:79:2825:-244.407,-14.6093,0	0/1:85:48,37:48:1701:37:1328:-94.2347,0,-127.786	0/1:138:76,62:76:2707:62:2204:-157.081,0,-202.332	0/1:58:25,33:25:900:33:1188:-89.7689,0,-63.8613	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:50:25,25:25:891:25:900:-66.2695,0,-65.4573	1/1:142:3,139:3:108:139:4952:-435.755,-32.6711,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:60:33,27:33:1180:27:957:-68.3821,0,-88.4462	1/1:49:1,48:1:36:48:1720:-151.487,-11.1522,0	1/1:59:1,58:1:36:58:2072:-183.152,-14.1625,0	0/1:142:77,65:77:2764:65:2326:-166.852,0,-206.255	0/1:66:50,16:50:1792:16:557:-30.5876,0,-141.694	1/1:123:0,123:0:0:123:4370:-393.469,-37.0267,0	1/1:90:0,90:0:0:90:3228:-290.742,-27.0927,0
chr09	2332072	.	G	A	30163.8	PASS	AB=0.529874;ABP=30.645;AC=60;AF=0.326087;AN=184;AO=1894;CIGAR=1X;DP=5330;DPB=5330;DPRA=1.22155;EPP=4115.78;EPPR=7459.85;GTI=3;LEN=1;MEANALT=1.01695;MQM=59.9578;MQMR=59.993;NS=92;NUMALT=1;ODDS=0.827723;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65365;QR=122821;RO=3434;RPL=0;RPP=4115.78;RPPR=7459.85;RPR=1894;RUN=1;SAF=1894;SAP=4115.78;SAR=0;SRF=3434;SRP=7459.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:4,6:4:144:6:208:-16.0488,0,-10.3033	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726	0/0:206:206,0:206:7357:0:0:0,-62.0122,-662.179	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:6:4,2:4:140:2:57:-3.60713,0,-11.1384	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/1:52:22,30:22:788:30:1057:-79.7854,0,-55.3205	0/1:61:24,37:24:860:37:1282:-97.3137,0,-59.359	0/1:68:36,32:36:1296:32:1084:-77.3868,0,-96.4739	0/1:34:24,10:24:860:10:360:-22.5093,0,-67.4868	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:54:26,28:26:936:28:962:-70.6311,0,-68.3038	0/1:48:25,23:25:896:23:824:-60.0339,0,-66.5109	0/1:55:27,28:27:968:28:966:-70.6905,0,-70.8807	0/1:36:18,18:18:648:18:617:-45.0129,0,-47.8148	0/1:52:20,32:20:716:32:1065:-80.4865,0,-49.1142	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:52:21,31:21:756:31:1047:-78.8776,0,-52.7137	0/1:95:41,54:41:1476:54:1861:-139.162,0,-104.538	0/1:31:11,20:11:396:20:678:-52.0017,0,-26.6508	0/1:65:57,8:57:2014:8:273:-5.33323,0,-161.963	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:200:89,111:89:3162:111:3857:-287.121,0,-224.597	0/1:138:71,67:71:2556:67:2279:-163.821,0,-188.747	0/1:25:9,16:9:305:16:541:-41.4836,0,-20.2515	0/1:234:98,136:98:3501:136:4711:-353.711,0,-244.858	0/1:82:43,39:43:1540:39:1350:-97.1025,0,-114.209	0/1:85:42,42:42:1508:42:1466:-106.731,0,-110.515	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:2,2:2:72:2:57:-4.20919,0,-5.6326	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:163:63,100:63:2268:100:3457:-262.273,0,-155.314	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:23:14,9:14:500:9:301:-20.49,0,-38.4125	.:.:.:.:.:.:.:.	0/1:111:54,57:54:1940:57:1993:-146.226,0,-141.462	0/1:22:12,10:12:428:10:296:-20.3047,0,-32.2361	0/1:44:25,19:25:900:19:646:-45.2008,0,-68.0757	0/1:45:20,25:20:716:25:896:-67.414,0,-51.2214	0/1:45:26,19:26:932:19:680:-47.9828,0,-70.6525	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:70:69,0:69:2472:0:0:0,-20.7711,-222.374	0/1:71:22,49:22:788:49:1680:-130.105,0,-49.8717	0/1:105:55,50:55:1980:50:1704:-122.029,0,-146.866	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/0:62:62,0:62:2194:0:0:0,-18.6639,-197.722	0/1:20:9,11:9:320:11:358:-26.5034,0,-23.1218	0/1:97:37,60:37:1328:60:2023:-153.132,0,-90.6223	0/1:13:7,6:7:248:6:201:-14.5027,0,-18.7508	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:51:32,19:32:1137:19:665:-44.8203,0,-87.2844	0/1:85:36,49:36:1296:49:1720:-129.496,0,-91.3564	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:216:216,0:216:7749:0:0:0,-65.0225,-697.438	0/1:106:58,48:58:2069:48:1625:-114.619,0,-154.57	0/1:39:16,23:16:576:23:820:-62.3823,0,-40.4348	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:103:61,42:61:2181:42:1493:-103.656,0,-165.548	0/1:95:19,76:19:684:76:2674:-212.306,0,-33.2925	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/1:28:17,11:17:612:11:392:-27.1866,0,-46.9846	0/1:12:5,7:5:180:7:244:-18.6871,0,-12.9397	0/1:91:48,43:48:1682:43:1498:-107.714,0,-124.269	0/1:68:38,30:38:1368:30:1004:-70.1877,0,-102.951	0/1:86:43,43:43:1544:43:1516:-110.845,0,-113.364	0/0:131:131,0:131:4681:0:0:0,-39.4349,-421.45	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:108:50,58:50:1785:58:1970:-145.054,0,-128.419	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/1:82:29,53:29:1032:53:1749:-132.992,0,-68.509	0/1:82:40,42:40:1413:42:1439:-105.114,0,-102.781	0/1:41:22,19:22:792:19:672:-48.4623,0,-59.2634	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:38:16,22:16:572:22:757:-57.0068,0,-40.3743	0/0:87:86,1:86:3073:1:36:0,-22.5913,-273.199	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/1:45:21,24:21:752:24:860:-64.1755,0,-54.4599	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:94:40,54:40:1440:54:1874:-140.632,0,-101.601	0/1:47:21,26:21:741:26:908:-67.8841,0,-52.8632	0/0:95:95,0:95:3382:0:0:0,-28.5978,-304.593	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709
chr09	2332246	.	AATG	AATA,GATA	205118	PASS	AB=0.477889,0.520268;ABP=28.3609,24.3118;AC=130,58;AF=0.691489,0.308511;AN=188;AO=6530,3113;CIGAR=3M1X,1X2M1X;DP=9664;DPB=9664;DPRA=0,1.14392;EPP=14018.2,6719.44;EPPR=5.18177;GTI=1;LEN=1,4;MEANALT=1.88298,2.1875;MQM=59.927,59.84;MQMR=60;NS=94;NUMALT=2;ODDS=0.156426;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=233932,110142;QR=29;RO=1;RPL=19,5;RPP=14018.2,6719.44;RPPR=5.18177;RPR=6511,3108;RUN=1,1;SAF=6530,3113;SAP=14182.7,6762.8;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:64:0,37,27:0:0:37,27:1332,952:-186.555,-77.866,-66.7278,-109.044,0,-100.916	1/1:77:0,77,0:0:0:77,0:2756,0:-248.264,-23.1793,0,-248.264,-23.1793,-248.264	1/1:221:0,221,0:0:0:221,0:7910,0:-711.921,-66.5276,0,-711.921,-66.5276,-711.921	1/1:207:0,206,0:0:0:206,0:7370,0:-663.081,-62.0122,0,-663.081,-62.0122,-663.081	1/2:77:0,33,44:0:0:33,44:1176,1562:-223.483,-127.626,-117.692,-96.2132,0,-82.9679	1/2:21:0,10,11:0:0:10,11:360,395:-61.9554,-32.5808,-29.5705,-29.734,0,-26.4227	1/1:85:0,85,0:0:0:85,0:3052,0:-274.909,-25.5876,0,-274.909,-25.5876,-274.909	1/2:98:0,49,49:0:0:49,49:1756,1720:-283.539,-140.321,-125.57,-143.573,0,-128.822	1/2:83:0,40,43:0:0:40,43:1425,1522:-240.475,-124.328,-112.287,-116.501,0,-103.557	1/2:87:0,37,49:0:0:37,49:1324,1734:-249.222,-141.254,-130.115,-107.984,0,-93.2332	1/2:69:0,27,42:0:0:27,42:964,1474:-198.814,-120.221,-112.093,-78.9475,0,-66.3042	1/1:137:0,137,0:0:0:137,0:4905,0:-441.599,-41.2411,0,-441.599,-41.2411,-441.599	1/2:84:0,49,35:0:0:49,35:1764,1233:-244.673,-100.735,-85.9845,-144.293,0,-133.757	1/2:53:0,24,29:0:0:24,29:864,1026:-154.423,-83.9226,-76.6979,-70.8578,0,-62.128	1/2:74:0,42,32:0:0:42,32:1512,1137:-216.373,-92.9991,-80.3559,-123.731,0,-114.098	1/2:68:0,40,28:0:0:40,28:1440,977:-197.296,-79.8031,-67.7619,-117.846,0,-109.417	1/2:27:0,16,11:0:0:16,11:576,384:-78.588,-31.5829,-26.7664,-47.3585,0,-44.0472	1/1:36:0,35,0:0:0:35,0:1260,0:-113.346,-10.5361,0,-113.346,-10.5361,-113.346	1/1:40:0,40,0:0:0:40,0:1440,0:-129.898,-12.0412,0,-129.898,-12.0412,-129.898	1/2:256:0,143,112:0:0:143,112:5125,3975:-741.889,-323.915,-280.868,-418.02,0,-384.304	1/2:168:0,58,109:0:0:58,109:2084,3872:-485.518,-315.506,-298.046,-170.01,0,-137.198	1/2:183:0,77,106:0:0:77,106:2749,3744:-529.221,-305.105,-281.926,-224.471,0,-192.562	1/1:137:0,135,1:0:0:135,1:4848,36:-436.112,-40.6391,0,-433.175,-37.7016,-432.874	1/2:100:0,42,58:0:0:42,58:1512,2046:-290.326,-166.952,-154.308,-123.731,0,-106.272	1/1:135:0,135,0:0:0:135,0:4802,0:-431.902,-40.6391,0,-431.902,-40.6391,-431.902	1/2:230:0,97,133:0:0:97,133:3454,4716:-666.015,-384.504,-355.304,-281.867,0,-241.83	1/2:257:0,137,120:0:0:137,120:4897,4272:-747.791,-348.513,-307.272,-399.634,0,-363.511	1/2:36:0,21,15:0:0:21,15:756,539:-106.017,-44.3307,-38.0091,-62.0456,0,-57.5301	1/2:322:0,156,166:0:0:156,166:5600,5832:-931.781,-474.983,-428.022,-457.153,0,-407.182	1/2:172:0,83,89:0:0:83,89:2984,3147:-500.068,-256.622,-231.636,-243.803,0,-217.011	1/2:188:0,79,107:0:0:79,107:2821,3780:-537.802,-307.829,-284.047,-229.969,0,-197.759	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:12:0,4,7:0:0:4,7:144,250:-32.2404,-20.4849,-19.2807,-11.8455,0,-9.73833	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/2:179:0,80,99:0:0:80,99:2868,3531:-522.111,-288.197,-264.115,-234.271,0,-204.469	1/1:178:0,177,1:0:0:177,1:6348,36:-571.049,-53.2823,0,-568.112,-49.9851,-567.811	1/2:58:0,30,28:0:0:30,28:1072,986:-168.002,-80.6231,-71.5922,-87.7331,0,-79.3043	1/2:9:0,6,3:0:0:6,3:216,108:-26.7966,-9.17208,-7.3659,-17.9843,0,-17.0812	1/2:152:0,77,74:0:0:77,74:2753,2642:-439.865,-215.391,-192.212,-224.471,0,-202.195	1/2:43:0,21,22:0:0:21,22:756,779:-125.497,-63.8083,-57.4867,-62.0456,0,-55.4229	1/2:202:0,106,96:0:0:106,96:3761,3365:-580.402,-273.977,-242.068,-306.777,0,-277.879	1/2:63:0,27,36:0:0:27,36:964,1283:-183.528,-104.936,-96.8078,-78.949,0,-68.1119	1/2:80:0,41,39:0:0:41,39:1476,1382:-233.376,-112.939,-100.596,-120.794,0,-109.054	1/1:131:0,128,1:0:0:128,1:4573,35:-411.42,-38.5318,0,-408.573,-35.6657,-408.272	1/1:146:0,145,1:0:0:145,1:5193,36:-467.147,-43.6494,0,-464.21,-40.3521,-463.909	1/1:178:0,176,2:0:0:176,2:6304,71:-567.085,-52.9813,0,-561.3,-46.8413,-560.698	1/2:121:0,66,55:0:0:66,55:2372,1944:-351.966,-158.452,-138.584,-193.87,0,-177.313	1/2:103:0,52,51:0:0:52,51:1860,1805:-298.885,-147.372,-131.718,-151.868,0,-136.516	1/1:158:0,157,0:0:0:157,0:5621,0:-505.755,-47.2617,0,-505.755,-47.2617,-505.755	1/2:16:0,9,7:0:0:9,7:324,234:-45.7305,-19.2793,-16.57,-26.7966,0,-24.6894	1/1:123:0,123,0:0:0:123,0:4428,0:-398.689,-37.0267,0,-398.689,-37.0267,-398.689	1/1:76:0,76,0:0:0:76,0:2732,0:-246.119,-22.8783,0,-246.119,-22.8783,-246.119	1/2:11:0,10,1:0:0:10,1:345,36:-31.3093,-3.29724,-0.286945,-28.3705,0,-28.0695	1/2:145:0,73,72:0:0:73,72:2605,2551:-420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chr09	2332276	.	G	A	132109	PASS	AB=0.48844;ABP=9.73752;AC=130;AF=0.691489;AN=188;AO=6495;CIGAR=1X;DP=9468;DPB=9468;DPRA=0;EPP=14106.7;EPPR=6450.11;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9318;MQMR=59.9111;NS=94;NUMALT=1;ODDS=2.3843;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232235;QR=105466;RO=2969;RPL=6495;RPP=14106.7;RPPR=6450.11;RPR=0;RUN=1;SAF=6495;SAP=14106.7;SAR=0;SRF=2969;SRP=6450.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:25,38:25:892:38:1364:-104.096,0,-61.6348	1/1:79:0,79:0:0:79:2840:-255.82,-23.7814,0	1/1:219:0,219:0:0:219:7829:-704.635,-65.9256,0	1/1:209:1,208:1:36:208:7387:-661.272,-59.317,0	0/1:73:41,32:41:1455:32:1133:-80.3015,0,-109.27	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	1/1:82:0,82:0:0:82:2942:-265.013,-24.6845,0	0/1:93:43,50:43:1528:50:1772:-131.765,0,-109.8	0/1:78:38,40:38:1349:40:1440:-106.414,0,-98.2279	0/1:84:48,36:48:1673:36:1292:-91.2972,0,-125.568	0/1:68:41,27:41:1431:27:964:-66.6052,0,-108.612	1/1:136:1,135:1:32:135:4801:-429.047,-37.7408,0	0/1:83:35,48:35:1235:48:1724:-130.46,0,-86.4504	0/1:52:28,24:28:976:24:864:-62.429,0,-72.4961	0/1:73:31,42:31:1108:42:1500:-113.319,0,-78.0496	0/1:65:24,41:24:856:41:1464:-112.485,0,-57.7942	0/1:26:10,16:10:345:16:576:-44.3482,0,-23.554	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:253:110,143:110:3929:143:5108:-383.695,0,-277.63	0/1:166:108,58:108:3840:58:2080:-137.499,0,-295.825	0/1:177:99,77:99:3525:77:2764:-195.66,0,-264.092	1/1:137:1,136:1:36:136:4880:-435.753,-37.6428,0	0/1:95:53,42:53:1892:42:1512:-107.777,0,-141.96	1/1:136:0,136:0:0:136:4837:-435.342,-40.9401,0	0/1:226:130,96:130:4628:96:3414:-239.436,0,-348.647	0/1:255:115,139:115:4064:139:4969:-370.562,0,-289.144	0/1:37:14,22:14:500:22:792:-60.4088,0,-34.1395	0/1:310:155,155:155:5523:155:5542:-405.579,0,-403.32	0/1:168:87,81:87:3094:81:2895:-210.213,0,-228.07	0/1:183:105,78:105:3737:78:2793:-196.502,0,-281.397	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:24:1,23:1:36:23:828:-71.2458,-3.62645,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:10:5,4:5:180:4:144:-10.2445,0,-13.483	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	0/1:174:94,80:94:3298:80:2864:-205.617,0,-244.658	1/1:171:1,170:1:32:170:6102:-546.079,-48.2768,0	0/1:55:25,30:25:900:30:1076:-80.5846,0,-64.7644	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:148:73,75:73:2576:75:2675:-196.443,0,-187.536	0/1:42:21,21:21:743:21:756:-55.724,0,-54.5501	0/1:196:92,104:92:3287:104:3717:-275.728,0,-237.046	0/1:61:34,27:34:1224:27:972:-69.4351,0,-92.1042	0/1:76:36,40:36:1258:40:1432:-106.299,0,-90.6425	1/1:130:1,129:1:36:129:4619:-412.269,-35.5356,0	1/1:143:0,143:0:0:143:5116:-460.583,-43.0473,0	1/1:178:2,176:2:72:176:6279:-558.355,-46.7466,0	0/1:117:54,63:54:1925:63:2264:-168.802,0,-138.303	0/1:102:50,52:50:1791:52:1853:-136.298,0,-130.761	1/1:159:0,159:0:0:159:5665:-509.959,-47.8638,0	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	1/1:122:0,122:0:0:122:4375:-393.922,-36.7257,0	1/1:75:0,75:0:0:75:2692:-242.521,-22.5773,0	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	0/1:142:68,74:68:2424:74:2660:-196.888,0,-175.647	0/1:61:32,29:32:1140:29:1040:-75.5515,0,-84.5464	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:55:30,25:30:1064:25:900:-64.7506,0,-79.515	0/1:124:61,63:61:2175:63:2249:-165.346,0,-158.688	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5473	1/1:200:0,200:0:0:200:7160:-644.428,-60.206,0	0/1:160:85,75:85:3018:75:2682:-193.46,0,-223.686	0/1:58:33,25:33:1167:25:896:-63.5006,0,-87.8753	1/1:102:0,102:0:0:102:3653:-328.972,-30.7051,0	0/1:157:71,86:71:2487:86:3066:-228.907,0,-176.814	0/1:182:121,61:121:4283:61:2177:-141.401,0,-330.862	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:61:0,61:0:0:61:2165:-195.115,-18.3628,0	0/1:35:24,11:24:864:11:396:-25.4467,0,-67.5465	0/1:18:10,8:10:356:8:273:-19.4816,0,-26.9627	0/1:131:73,58:73:2608:58:2064:-146.592,0,-195.533	0/1:93:49,44:49:1727:44:1561:-112.783,0,-127.716	0/1:108:58,50:58:2070:50:1780:-127.971,0,-154.058	1/1:155:0,155:0:0:155:5551:-499.582,-46.6597,0	1/1:176:0,176:0:0:176:6315:-568.414,-52.9813,0	0/1:90:36,54:36:1268:54:1936:-147.424,0,-87.3008	1/1:23:0,23:0:0:23:824:-74.4657,-6.92369,0	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	0/1:75:42,33:42:1504:33:1184:-84.2911,0,-113.077	0/1:241:110,131:110:3908:131:4687:-349.436,0,-279.359	0/1:52:29,23:29:1036:23:802:-56.843,0,-77.8645	1/1:76:0,76:0:0:76:2699:-243.152,-22.8783,0	0/1:40:15,25:15:536:25:896:-68.9192,0,-36.5336	1/1:115:0,115:0:0:115:4119:-370.887,-34.6185,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:86:42,44:42:1512:44:1584:-116.963,0,-110.486	1/1:99:0,99:0:0:99:3526:-317.551,-29.802,0	1/1:58:0,58:0:0:58:2075:-187.019,-17.4597,0	0/1:135:65,70:65:2297:70:2512:-185.692,0,-166.351	0/1:67:51,16:51:1828:16:576:-32.006,0,-144.632	1/1:168:0,168:0:0:168:5965:-536.955,-50.573,0	1/1:118:0,118:0:0:118:4224:-380.332,-35.5215,0
chr09	2332342	.	TACA	CACA,CACT	250966	PASS	AB=0.47504,0.520422;ABP=43.5518,30.1496;AC=130,58;AF=0.691489,0.308511;AN=188;AO=7901,3909;CIGAR=1X3M,1X2M1X;DP=11864;DPB=11864;DPRA=0,1.37848;EPP=16926.1,8335.67;EPPR=5.18177;GTI=1;LEN=1,4;MEANALT=2.24468,2.59091;MQM=59.9851,59.6818;MQMR=60;NS=94;NUMALT=2;ODDS=0.885615;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,32;PQR=0;PRO=0;QA=282403,138370;QR=36;RO=1;RPL=27,18;RPP=16926.1,8335.67;RPPR=5.18177;RPR=7874,3891;RUN=1,1;SAF=0,0;SAP=17159.8,8491.3;SAR=7901,3909;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:57:0,27,29:0:0:27,29:957,1010:-159.621,-81.6531,-73.5253,-78.1085,0,-69.3786	1/1:197:0,196,1:0:0:196,1:6998,30:-629.582,-59.0019,0,-627.184,-56.3033,-626.883	1/1:151:0,149,0:0:0:149,0:5312,0:-477.855,-44.8535,0,-477.855,-44.8535,-477.855	1/1:330:0,327,2:0:0:327,2:11720,49:-1054.41,-98.4368,0,-1050.61,-94.6324,-1050	1/2:87:0,38,49:0:0:38,49:1359,1710:-250.251,-139.434,-127.995,-111.171,0,-96.4202	1/2:62:0,22,40:0:0:22,40:788,1389:-177.532,-113.264,-106.641,-64.6221,0,-52.5809	1/1:201:0,199,0:0:0:199,0:7108,0:-639.514,-59.905,0,-639.514,-59.905,-639.514	1/2:199:0,90,108:0:0:90,108:3224,3827:-574.11,-311.177,-284.084,-262.93,0,-230.418	1/2:129:0,57,72:0:0:57,72:2036,2525:-371.802,-205.803,-188.644,-166.354,0,-144.679	1/2:165:0,73,91:0:0:73,91:2624,3247:-478.637,-264.563,-242.588,-214.072,0,-186.678	1/2:51:0,27,22:0:0:27,22:959,785:-142.249,-64.1018,-55.974,-78.2499,0,-71.6272	1/1:84:0,83,0:0:0:83,0:2968,0:-266.993,-24.9855,0,-266.993,-24.9855,-266.993	1/2:58:0,28,30:0:0:28,30:985,1075:-168.21,-88.032,-79.6032,-80.5327,0,-71.5018	1/2:90:0,42,47:0:0:42,47:1495,1670:-257.845,-135.999,-123.356,-121.892,0,-107.743	1/2:67:0,34,33:0:0:34,33:1220,1166:-194.827,-95.3114,-85.0763,-99.8718,0,-89.9378	1/2:49:0,20,28:0:0:20,28:701,980:-136.794,-79.7523,-73.7317,-57.0888,0,-48.6599	1/2:75:0,37,38:0:0:37,38:1324,1348:-218.139,-110.171,-99.0331,-108.324,0,-96.8848	1/1:54:0,54,0:0:0:54,0:1944,0:-175.236,-16.2556,0,-175.236,-16.2556,-175.236	1/1:48:0,47,0:0:0:47,0:1680,0:-151.127,-14.1484,0,-151.127,-14.1484,-151.127	1/2:298:0,167,130:0:0:167,130:5987,4580:-861.137,-372.83,-322.558,-488.302,0,-449.168	1/2:178:0,95,83:0:0:95,83:3393,2941:-516.57,-239.938,-211.341,-276.987,0,-252.001	1/2:166:0,59,106:0:0:59,106:2096,3743:-475.509,-304.716,-286.955,-170.807,0,-138.898	1/1:149:0,149,0:0:0:149,0:5324,0:-479.29,-44.8535,0,-479.29,-44.8535,-479.29	1/2:162:0,66,95:0:0:66,95:2346,3360:-464.827,-273.654,-253.786,-191.168,0,-162.57	1/1:86:1,83,1:1:36:83,1:2937,25:-261.059,-22.0002,0,-259.412,-23.0437,-262.049	1/2:450:0,224,222:0:0:224,222:8048,7874:-1297.31,-640.763,-573.332,-656.572,0,-589.743	1/2:230:0,120,110:0:0:120,110:4242,3885:-661.411,-315.929,-279.806,-345.835,0,-312.722	1/2:50:0,27,23:0:0:27,23:963,817:-145.43,-66.9281,-58.8003,-78.8581,0,-71.9344	1/2:350:0,174,174:0:0:174,174:6244,6212:-1015.7,-506.383,-454.004,-509.314,0,-456.935	1/2:270:0,154,115:0:0:154,115:5505,4077:-781.022,-332.16,-285.801,-448.956,0,-414.338	1/2:208:0,111,96:0:0:111,96:3969,3432:-603.54,-279.912,-246.497,-323.709,0,-294.81	1/1:5:0,5,0:0:0:5,0:165,0:-15.1736,-1.50515,0,-15.1736,-1.50515,-15.1736	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:6:0,3,3:0:0:3,3:108,101:-17.3439,-8.52004,-7.61695,-9.17208,0,-8.26899	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:253:0,115,137:0:0:115,137:4116,4870:-732.351,-396.704,-362.085,-335.644,0,-294.403	1/1:320:0,315,1:0:0:315,1:11252,36:-1012.22,-94.8245,0,-1009.29,-91.8824,-1008.98	1/2:52:0,29,22:0:0:29,22:1044,783:-148.999,-63.8114,-55.0815,-85.1851,0,-78.5624	1/2:2:0,1,1:0:0:1,1:36,30:-5.66589,-2.69854,-2.39751,-3.29724,0,-2.99621	1/2:192:0,92,100:0:0:92,100:3281,3534:-555.624,-288.165,-260.47,-267.814,0,-237.711	1/2:21:0,15,6:0:0:15,6:521,213:-60.0583,-17.7101,-13.1947,-42.7009,0,-40.8947	1/2:172:0,84,88:0:0:84,88:3001,3132:-500.252,-255.575,-230.289,-245.034,0,-218.543	1/2:91:0,37,54:0:0:37,54:1332,1897:-263.434,-154.746,-143.608,-109.044,0,-92.7887	1/2:73:0,35,38:0:0:35,38:1260,1342:-212.452,-109.639,-99.1027,-103.169,0,-91.7303	1/1:142:0,141,1:0:0:141,1:5055,25:-454.843,-42.4452,0,-452.895,-40.2464,-452.594	1/1:178:0,178,0:0:0:178,0:6355,0:-572.042,-53.5833,0,-572.042,-53.5833,-572.042	1/1:261:0,259,1:0:0:259,1:9268,36:-833.751,-77.9668,0,-830.814,-74.9894,-830.513	1/2:179:0,86,93:0:0:86,93:3080,3297:-520.063,-268.88,-242.991,-251.54,0,-223.544	1/2:195:0,104,91:0:0:104,91:3724,3246:-568.535,-264.838,-233.531,-304.054,0,-276.66	1/1:164:0,164,0:0:0:164,0:5880,0:-529.309,-49.3689,0,-529.309,-49.3689,-529.309	1/2:5:0,4,1:0:0:4,1:144,35:-14.9552,-3.1976,-1.99348,-12.1095,0,-11.8085	1/1:168:0,168,0:0:0:168,0:6000,0:-540.105,-50.573,0,-540.105,-50.573,-540.105	1/1:59:0,58,1:0:0:58,1:2073,24:-186.598,-17.4597,0,-184.741,-15.3609,-184.44	1/2:14:0,7,7:0:0:7,7:252,248:-41.107,-20.5421,-18.4349,-20.9217,0,-18.8145	1/2:133:0,67,65:0:0:67,65:2396,2294:-382.1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chr09	2332481	.	T	C	75029.5	PASS	AB=0.551337;ABP=178.476;AC=58;AF=0.308511;AN=188;AO=4229;CIGAR=1X;DP=11820;DPB=11820;DPRA=1.23574;EPP=8944.57;EPPR=15899;GTI=4;LEN=1;MEANALT=1.08197;MQM=59.9638;MQMR=59.9947;NS=94;NUMALT=1;ODDS=3.24806;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150881;QR=271730;RO=7586;RPL=28;RPP=8944.57;RPPR=15899;RPR=4201;RUN=1;SAF=0;SAP=9186.17;SAR=4229;SRF=0;SRP=16475.8;SRR=7586;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:27,35:27:972:35:1247:-93.8702,0,-69.134	0/0:197:197,0:197:7053:0:0:0,-59.3029,-634.829	0/0:172:172,0:172:6168:0:0:0,-51.7772,-555.217	0/0:258:257,1:257:9158:1:36:0,-74.0675,-820.594	0/1:142:70,72:70:2500:72:2592:-190.782,0,-182.507	0/1:44:20,24:20:716:24:851:-63.6641,0,-51.5224	0/0:171:171,0:171:6135:0:0:0,-51.4761,-552.247	0/1:233:114,119:114:4072:119:4213:-309.212,0,-296.525	0/1:121:69,52:69:2472:52:1864:-131.615,0,-186.309	0/1:123:64,59:64:2300:59:2099:-152.146,0,-170.234	0/1:47:28,19:28:1000:19:663:-45.845,0,-76.167	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:60:29,31:29:1044:31:1108:-81.9692,0,-76.213	0/1:62:36,26:36:1292:26:920:-64.4532,0,-97.9199	0/1:75:47,28:47:1676:28:996:-67.3776,0,-128.55	0/1:62:35,27:35:1256:27:959:-67.9615,0,-94.6814	0/1:69:29,40:29:1036:40:1440:-109.127,0,-72.7828	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:418:170,248:170:6096:248:8860:-671.555,0,-422.91	0/1:211:78,133:78:2804:133:4734:-362.701,0,-189.082	0/1:336:63,271:63:2260:271:9691:-771.235,0,-102.759	0/0:83:83,0:83:2975:0:0:0,-24.9855,-267.982	0/1:136:69,67:69:2471:67:2384:-173.878,0,-181.703	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:278:128,150:128:4592:150:5347:-397.675,0,-329.757	0/1:273:139,134:139:4965:134:4783:-348.446,0,-364.817	0/1:41:17,24:17:612:24:851:-64.5672,0,-43.0712	0/1:664:268,395:268:9597:395:14098:-1068.79,0,-663.888	0/1:190:82,108:82:2928:108:3863:-290.669,0,-206.56	0/1:175:73,102:73:2616:102:3647:-275.754,0,-183.007	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:211:113,98:113:4056:98:3479:-249.806,0,-301.709	0/0:223:223,0:223:7996:0:0:0,-67.1297,-719.637	0/1:51:22,29:22:788:29:1022:-76.9383,0,-55.8923	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:240:106,134:106:3808:134:4778:-357.93,0,-270.669	0/1:39:15,24:15:540:24:844:-64.5378,0,-37.1964	0/1:170:79,91:79:2844:91:3261:-242.535,0,-205.022	0/1:68:41,27:41:1464:27:968:-66.9673,0,-111.586	0/1:64:30,34:30:1072:34:1157:-84.9516,0,-77.5265	0/0:164:164,0:164:5857:0:0:0,-49.3689,-527.241	0/0:156:156,0:156:5574:0:0:0,-46.9607,-501.783	0/0:262:262,0:262:9373:0:0:0,-78.8699,-843.533	0/1:124:60,64:60:2152:64:2280:-168.133,0,-156.619	0/1:171:81,90:81:2896:90:3202:-236.925,0,-209.4	0/0:279:279,0:279:10001:0:0:0,-83.9874,-900.023	0/1:10:5,5:5:180:5:180:-13.5229,0,-13.5418	0/0:232:232,0:232:8293:0:0:0,-69.839,-746.368	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:210:92,118:92:3292:118:4205:-315.413,0,-233.283	0/1:82:34,48:34:1220:48:1715:-129.95,0,-85.4223	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:95:34,61:34:1224:61:2171:-167.057,0,-81.8692	0/1:96:45,51:45:1612:51:1813:-134.551,0,-116.471	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:245:245,0:245:8800:0:0:0,-73.7523,-791.983	0/1:181:103,78:103:3676:78:2800:-197.753,0,-276.558	0/1:93:43,50:43:1540:50:1788:-133.207,0,-110.897	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.065	0/1:248:117,131:117:4192:131:4684:-346.694,0,-302.806	0/1:157:42,115:42:1504:115:4128:-324.441,0,-88.3929	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:82:82,0:82:2909:0:0:0,-24.6845,-262.028	0/1:65:41,24:41:1476:24:856:-57.7942,0,-113.569	0/1:25:8,17:8:288:17:612:-47.8877,0,-18.7417	0/1:112:47,65:47:1688:65:2328:-176.065,0,-118.492	0/1:100:28,72:28:1008:72:2580:-202.346,0,-60.9334	0/1:185:80,105:80:2852:105:3751:-282.099,0,-201.228	0/0:242:242,0:242:8696:0:0:0,-72.8493,-782.627	0/0:148:147,1:147:5267:1:36:0,-40.9542,-470.567	0/1:189:72,117:72:2575:117:4180:-319.486,0,-175.104	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:180:180,0:180:6449:0:0:0,-54.1854,-580.494	0/1:115:83,32:83:2972:32:1144:-68.6511,0,-233.091	0/1:347:167,179:167:5988:179:6399:-471.47,0,-434.509	0/1:101:48,53:48:1728:53:1884:-139.435,0,-125.401	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:93:61,32:61:2174:32:1143:-75.1829,0,-167.929	0/0:150:149,1:149:5344:1:36:0,-41.5562,-477.494	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:63:35,28:35:1260:28:1000:-71.3505,0,-94.7406	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:47:23,24:23:815:24:848:-62.4912,0,-59.5224	0/1:53:9,43:9:324:43:1535:-122.429,0,-13.4925	0/0:198:198,0:198:7093:0:0:0,-59.6039,-638.427	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499
chr09	2332517	.	C	T	73318.4	PASS	AB=0.556032;ABP=212.774;AC=58;AF=0.308511;AN=188;AO=4281;CIGAR=1X;DP=11793;DPB=11793;DPRA=1.29593;EPP=9299.08;EPPR=16312.9;GTI=4;LEN=1;MEANALT=1;MQM=59.9612;MQMR=59.9927;NS=94;NUMALT=1;ODDS=3.86865;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151264;QR=267522;RO=7511;RPL=4281;RPP=9299.08;RPPR=16312.9;RPR=0;RUN=1;SAF=0;SAP=9299.08;SAR=4281;SRF=0;SRP=16312.9;SRR=7511;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:28,35:28:961:35:1237:-92.6674,0,-67.8309	0/0:191:191,0:191:6829:0:0:0,-57.4967,-614.68	0/0:165:165,0:165:5886:0:0:0,-49.6699,-529.849	0/0:255:254,1:254:9040:1:36:0,-73.1644,-809.979	0/1:142:68,74:68:2421:74:2628:-194.022,0,-175.398	0/1:41:18,23:18:625:23:820:-61.7803,0,-44.2303	0/0:169:169,0:169:6003:0:0:0,-50.8741,-540.374	0/1:230:112,118:112:3959:118:4157:-305.079,0,-287.264	0/1:119:66,53:66:2330:53:1854:-131.31,0,-174.135	0/1:122:63,59:63:2234:59:2096:-152.167,0,-164.595	0/1:47:28,19:28:1004:19:669:-46.3855,0,-76.5275	0/0:61:61,0:61:2167:0:0:0,-18.3628,-195.296	0/1:62:30,32:30:1076:32:1137:-83.9731,0,-78.489	0/1:65:37,28:37:1302:28:1004:-71.1089,0,-97.9103	0/1:75:47,28:47:1677:28:1000:-67.7381,0,-128.638	0/1:63:34,29:34:1215:29:1032:-74.2286,0,-90.6909	0/1:68:27,41:27:957:41:1476:-112.666,0,-65.9738	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:416:167,249:167:5951:249:8747:-662.011,0,-410.467	0/1:213:77,136:77:2756:136:4812:-369.111,0,-184.163	0/1:331:61,270:61:2161:270:9503:-755.606,0,-95.1146	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.526	0/1:140:71,69:71:2533:69:2464:-179.87,0,-186.076	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:275:127,148:127:4506:148:5219:-387.059,0,-322.926	0/1:277:141,136:141:5036:136:4791:-347.964,0,-370.002	0/1:42:18,24:18:633:24:860:-65.0786,0,-44.6518	0/1:659:267,392:267:9491:392:13764:-1040.16,0,-655.772	0/1:197:85,112:85:2999:112:3959:-297.201,0,-210.836	0/1:178:74,104:74:2626:104:3647:-274.852,0,-183.001	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:213:114,99:114:4020:99:3528:-253.612,0,-297.868	0/0:217:217,0:217:7733:0:0:0,-65.3235,-695.981	0/1:53:22,31:22:788:31:1116:-84.7971,0,-55.2902	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:242:106,136:106:3808:136:4852:-363.986,0,-270.067	0/1:40:15,25:15:540:25:892:-68.5581,0,-36.8953	0/1:169:78,91:78:2785:91:3256:-242.387,0,-200.015	0/1:70:42,28:42:1512:28:1008:-69.9596,0,-115.303	0/1:63:28,35:28:973:35:1240:-92.9158,0,-68.9152	0/0:165:165,0:165:5877:0:0:0,-49.6699,-529.043	0/0:154:154,0:154:5475:0:0:0,-46.3586,-492.876	0/0:259:259,0:259:9198:0:0:0,-77.9668,-827.79	0/1:127:60,67:60:2152:67:2322:-171.005,0,-155.716	0/1:171:79,92:79:2817:92:3193:-236.116,0,-202.292	0/0:273:272,0:272:9627:0:0:0,-81.8802,-866.175	0/1:10:5,5:5:180:5:180:-13.5229,0,-13.5418	0/0:225:225,0:225:8084:0:0:0,-67.7317,-727.563	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:10:2,8:2:72:8:280:-22.529,0,-3.82642	0/1:205:91,114:91:3233:114:4024:-300.64,0,-229.481	0/1:79:31,48:31:1116:48:1689:-128.513,0,-76.9703	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:94:35,59:35:1229:59:2077:-158.9,0,-82.6151	0/1:97:45,52:45:1601:52:1868:-139.199,0,-115.178	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:247:246,1:246:8797:1:36:0,-70.7561,-788.119	0/1:181:102,79:102:3629:79:2780:-195.953,0,-272.329	0/1:94:41,53:41:1457:53:1837:-137.309,0,-103.127	0/0:88:88,0:88:3118:0:0:0,-26.4906,-280.845	0/1:251:116,135:116:4149:135:4794:-355.041,0,-298.033	0/1:161:45,116:45:1616:116:4129:-323.329,0,-96.8937	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:79:79,0:79:2779:0:0:0,-23.7814,-250.348	0/1:64:39,25:39:1400:25:896:-61.6944,0,-107.033	0/1:24:8,16:8:284:16:568:-44.2271,0,-18.6786	0/1:112:46,66:46:1625:66:2332:-176.426,0,-112.822	0/1:102:28,74:28:1008:74:2586:-202.284,0,-60.3313	0/1:187:79,108:79:2767:108:3817:-287.438,0,-192.977	0/0:242:242,0:242:8666:0:0:0,-72.8493,-779.929	0/0:142:142,0:142:5032:0:0:0,-42.7463,-453.024	0/1:194:72,122:72:2584:122:4336:-332.018,0,-174.409	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:183:183,0:183:6537:0:0:0,-55.0885,-588.413	0/1:112:80,32:80:2857:32:1144:-69.5542,0,-223.651	0/1:348:168,180:168:5970:180:6291:-461.531,0,-432.65	0/1:105:51,54:51:1836:54:1944:-143.628,0,-133.912	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:97:61,36:61:2169:36:1288:-87.0237,0,-166.275	0/0:151:150,1:150:5335:1:36:0,-41.8573,-476.684	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:64:36,28:36:1277:28:1008:-71.7704,0,-95.9652	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:46:22,24:22:788:24:848:-62.7923,0,-57.3974	0/1:54:9,45:9:324:45:1589:-127.043,0,-13.2502	0/0:197:197,0:197:7053:0:0:0,-59.3029,-634.829	0/0:89:88,1:88:3164:1:36:0,-23.1934,-281.385
chr09	2357523	.	G	A	105873	PASS	AB=0.454075;ABP=109.316;AC=129;AF=0.68617;AN=188;AO=5348;CIGAR=1X;DP=8524;DPB=8524;DPRA=22.9032;EPP=11616;EPPR=6893.09;GTI=5;LEN=1;MEANALT=1.03226;MQM=59.9867;MQMR=59.9912;NS=94;NUMALT=1;ODDS=0.202991;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191734;QR=113732;RO=3173;RPL=5348;RPP=11616;RPPR=6893.09;RPR=0;RUN=1;SAF=0;SAP=11616;SAR=5348;SRF=0;SRP=6893.09;SRR=3173;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:14,24:14:504:24:856:-65.922,0,-34.259	1/1:106:0,106:0:0:106:3800:-342.194,-31.9092,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:150:2,148:2:72:148:5308:-471.014,-38.3178,0	0/1:59:27,32:27:972:32:1140:-85.1484,0,-70.0371	0/1:51:28,22:28:1004:22:777:-54.8393,0,-75.2646	1/1:104:0,104:0:0:104:3736:-336.439,-31.3071,0	0/1:132:65,67:65:2336:67:2404:-176.881,0,-170.763	0/1:128:66,62:66:2360:62:2220:-161.533,0,-174.127	0/1:105:70,35:70:2512:35:1252:-81.3485,0,-194.724	0/1:37:15,22:15:536:22:788:-60.1067,0,-37.4367	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:66:27,39:27:972:39:1400:-106.431,0,-67.9299	0/1:63:39,24:39:1400:24:864:-59.1177,0,-107.334	0/1:59:21,38:21:756:38:1360:-104.94,0,-50.6065	0/1:36:17,19:17:604:19:680:-50.6921,0,-43.8535	0/1:78:35,43:35:1248:43:1548:-116.133,0,-89.1445	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:170:113,57:113:4026:57:2052:-133.776,0,-311.351	0/1:148:84,64:84:3012:64:2292:-161.971,0,-226.758	0/1:142:112,30:112:4016:30:1080:-54.767,0,-318.882	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	0/1:140:79,61:79:2836:61:2192:-155.391,0,-213.334	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	0/1:338:213,125:213:7617:125:4484:-301.98,0,-583.818	0/1:196:110,86:110:3952:86:3077:-218.155,0,-296.868	0/1:40:20,20:20:716:20:717:-52.8169,0,-52.7265	0/1:214:122,92:122:4376:92:3304:-233.158,0,-329.323	0/1:204:82,121:82:2940:121:4325:-327.956,0,-203.365	0/1:159:98,61:98:3524:61:2184:-148.961,0,-269.504	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:7:1,6:1:32:6:216:-17.6833,0,-1.0921	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:189:83,106:83:2968:106:3804:-285.662,0,-210.459	1/1:192:0,192:0:0:192:6876:-618.908,-57.7978,0	0/1:62:25,37:25:892:37:1332:-101.519,0,-61.9358	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:149:95,53:95:3385:53:1900:-126.366,0,-259.953	0/1:19:13,6:13:464:6:216:-14.0709,0,-36.3779	0/1:118:62,56:62:2232:56:2000:-144.752,0,-165.622	0/1:59:28,31:28:1004:31:1101:-81.6376,0,-72.9151	0/1:70:28,42:28:1004:42:1504:-114.582,0,-69.6038	1/1:104:0,104:0:0:104:3740:-336.799,-31.3071,0	1/1:100:0,100:0:0:100:3579:-322.317,-30.103,0	1/1:166:0,166:0:0:166:5944:-535.068,-49.971,0	0/1:137:81,56:81:2904:56:2008:-139.752,0,-220.354	0/1:142:68,74:68:2440:74:2664:-197.259,0,-177.109	1/1:182:0,182:0:0:182:6516:-586.518,-54.7875,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:27:7,20:7:252:20:720:-57.001,0,-14.9011	0/1:109:69,40:69:2480:40:1436:-96.7254,0,-190.641	0/1:49:30,19:30:1076:19:684:-47.1399,0,-82.4024	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:84:41,43:41:1472:43:1548:-114.327,0,-107.49	0/1:93:45,48:45:1604:48:1724:-127.45,0,-116.654	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:179:0,179:0:0:179:6408:-576.8,-53.8844,0	0/1:245:140,105:140:5028:105:3768:-265.566,0,-378.912	0/1:62:39,23:39:1404:23:824:-55.8195,0,-107.995	1/1:43:0,43:0:0:43:1548:-139.611,-12.9443,0	0/1:195:123,72:123:4420:72:2588:-174.468,0,-339.269	0/1:104:64,40:64:2296:40:1420:-96.7903,0,-175.594	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:72:34,38:34:1216:38:1364:-101.387,0,-88.0724	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:115:70,45:70:2504:45:1608:-110.392,0,-190.994	0/1:83:46,37:46:1652:37:1308:-93.036,0,-123.983	0/1:189:101,88:101:3624:88:3152:-227.01,0,-269.47	1/1:114:0,114:0:0:114:4088:-368.105,-34.3174,0	1/1:78:1,77:1:36:77:2768:-245.762,-19.8821,0	0/1:100:53,47:53:1900:47:1692:-122.464,0,-141.175	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	0/1:97:57,40:57:2036:40:1417:-98.6254,0,-154.312	0/1:238:113,125:113:4052:125:4480:-331.724,0,-293.222	0/1:98:49,49:49:1756:49:1748:-128.103,0,-128.823	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:82:38,44:38:1364:44:1584:-118.167,0,-98.3763	1/1:132:0,132:0:0:132:4744:-427.116,-39.736,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:66:28,38:28:1004:38:1364:-103.193,0,-70.8079	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:49:19,30:19:680:30:1061:-81.0489,0,-46.7787	0/1:63:45,18:45:1612:18:648:-39.687,0,-126.405	1/1:119:0,119:0:0:119:4280:-385.376,-35.8226,0	1/1:86:1,85:1:36:85:3052:-271.311,-22.2903,0
chr09	2504696	.	C	T	76629.3	PASS	AB=0.556616;ABP=218.893;AC=57;AF=0.303191;AN=188;AO=4325;CIGAR=1X;DP=12141;DPB=12141;DPRA=1.17251;EPP=9307.97;EPPR=16651;GTI=2;LEN=1;MEANALT=1.04762;MQM=59.9635;MQMR=59.993;NS=94;NUMALT=1;ODDS=2.71277;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155125;QR=279074;RO=7810;RPL=4315;RPP=9307.97;RPPR=16651;RPR=10;RUN=1;SAF=0;SAP=9394.63;SAR=4325;SRF=0;SRP=16962.2;SRR=7810;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:22,14:22:780:14:504:-34.861,0,-59.686	0/0:216:216,0:216:7715:0:0:0,-65.0225,-694.382	0/0:139:139,0:139:4965:0:0:0,-41.8432,-446.998	0/0:302:302,0:302:10793:0:0:0,-90.9111,-971.252	0/1:102:40,62:40:1436:62:2220:-169.359,0,-98.8326	0/1:35:15,20:15:540:20:720:-54.5927,0,-38.4005	0/0:135:135,0:135:4835:0:0:0,-40.639,-435.303	0/1:217:92,125:92:3296:125:4492:-339.123,0,-231.535	0/1:50:32,18:32:1140:18:648:-43.5719,0,-87.8577	0/1:163:51,112:51:1820:112:4027:-313.549,0,-115.013	0/1:112:47,65:47:1688:65:2318:-175.165,0,-118.492	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.709	0/1:70:40,30:40:1436:30:1080:-76.4412,0,-108.466	0/1:116:41,75:41:1468:75:2684:-206.886,0,-97.4966	0/1:82:38,44:38:1350:44:1584:-118.167,0,-97.1144	0/1:54:26,28:26:923:28:1004:-74.4202,0,-67.1311	0/1:83:53,30:53:1895:30:1080:-72.5278,0,-145.842	0/0:67:66,1:66:2356:1:36:0,-16.5707,-208.701	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/1:349:183,166:183:6555:166:5953:-430.815,0,-484.971	0/1:159:70,89:70:2504:89:3204:-240.718,0,-177.749	0/1:205:66,139:66:2351:139:4977:-386.364,0,-150.138	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.92	0/1:137:71,66:71:2531:66:2372:-172.497,0,-186.8	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/1:420:176,243:176:6269:243:8698:-656.356,0,-437.854	0/1:370:127,242:127:4540:242:8672:-669.016,0,-297.328	0/1:42:23,19:23:820:19:673:-48.1952,0,-61.4793	0/1:374:182,192:182:6483:192:6888:-507.401,0,-470.974	0/1:226:112,114:112:3999:114:4073:-298.723,0,-292.067	0/1:174:78,96:78:2775:96:3429:-256.443,0,-197.609	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:43:42,0:42:1495:0:0:0,-12.6433,-134.484	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:15:6,9:6:212:9:320:-24.6269,0,-14.9093	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/1:214:114,100:114:4066:100:3584:-258.346,0,-301.706	0/0:252:252,0:252:9020:0:0:0,-75.8596,-811.779	0/1:85:39,46:39:1388:46:1656:-123.741,0,-99.6314	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:180:77,103:77:2764:103:3700:-279.016,0,-194.816	0/1:55:28,27:28:1004:27:972:-71.2413,0,-74.1192	0/1:199:74,125:74:2652:125:4473:-342.833,0,-179.021	0/1:73:31,41:31:1112:41:1472:-110.742,0,-78.3574	0/1:64:32,32:32:1148:32:1152:-84.7242,0,-84.3639	0/0:105:105,0:105:3735:0:0:0,-31.6081,-336.352	0/0:121:120,1:120:4292:1:36:0,-32.8264,-382.859	0/0:213:211,2:211:7546:2:68:0,-57.6617,-672.722	0/1:163:64,99:64:2280:99:3560:-271.539,0,-156.394	0/1:259:110,149:110:3948:149:5352:-403.843,0,-277.544	0/0:215:215,0:215:7683:0:0:0,-64.7214,-691.506	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/0:196:196,0:196:7018:0:0:0,-59.0019,-631.681	0/0:44:41,3:41:1467:3:108:0,-3.17015,-122.25	0/1:37:23,14:23:828:14:504:-34.56,0,-63.706	0/1:172:80,92:80:2842:92:3308:-246.16,0,-204.241	0/1:55:24,31:24:860:31:1116:-84.195,0,-61.1652	0/1:24:6,18:6:216:18:648:-51.4272,0,-12.5658	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3237	0/1:118:50,68:50:1792:68:2439:-184.244,0,-126.041	0/1:131:58,73:58:2080:73:2624:-196.972,0,-148.035	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/0:251:250,0:250:8921:0:0:0,-75.2575,-802.515	0/1:252:120,132:120:4308:132:4709:-348.107,0,-312.036	0/1:115:53,62:53:1879:62:2228:-166.165,0,-134.77	0/0:140:140,0:140:5003:0:0:0,-42.1442,-450.418	0/1:256:120,136:120:4292:136:4888:-363.006,0,-309.394	0/1:219:45,174:45:1612:174:6235:-495.318,0,-79.4445	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.451	0/0:92:92,0:92:3262:0:0:0,-27.6948,-293.802	0/1:102:51,51:51:1824:51:1834:-134.636,0,-133.736	0/1:45:17,28:17:608:28:1008:-77.49,0,-41.5057	0/0:134:133,1:133:4759:1:36:0,-36.7397,-424.869	0/1:79:35,44:35:1256:44:1584:-119.07,0,-89.5639	0/1:175:73,102:73:2603:102:3656:-276.505,0,-181.838	0/0:219:218,1:218:7823:1:36:0,-62.3273,-700.497	0/0:150:149,0:149:5336:0:0:0,-44.8535,-480.013	0/1:163:72,91:72:2576:91:3276:-245.991,0,-183.022	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.6947	0/0:211:211,0:211:7547:0:0:0,-63.5173,-679.266	0/1:146:63,83:63:2256:83:2964:-223.043,0,-159.353	0/1:250:113,137:113:4040:137:4920:-367.692,0,-288.531	0/1:111:62,49:62:2224:49:1764:-125.607,0,-167.005	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.965	0/1:110:57,53:57:2023:53:1896:-137.805,0,-149.229	0/0:149:149,0:149:5291:0:0:0,-44.8535,-476.33	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:64:31,33:31:1112:33:1184:-87.6024,0,-81.1254	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:77:77,0:77:2725:0:0:0,-23.1793,-245.493	0/1:130:78,52:78:2796:52:1872:-129.625,0,-212.746	0/1:66:21,45:21:756:45:1599:-124.283,0,-48.4992	0/0:178:178,0:178:6376:0:0:0,-53.5833,-573.9	0/0:107:107,0:107:3819:0:0:0,-32.2102,-343.908
chr09	2516027	.	ATTTAC	AATTAC	44761.2	PASS	AB=0.459722;ABP=36.4213;AC=128;AF=0.680851;AN=188;AO=2263;CIGAR=1M1X4M;DP=3577;DPB=3575;DPRA=9.79396;EPP=4917.05;EPPR=2775.98;GTI=3;LEN=1;MEANALT=1.2967;MQM=59.5789;MQMR=59.9193;NS=94;NUMALT=1;ODDS=2.14277;PAIRED=0;PAIREDR=0;PAO=4;PQA=144;PQR=144;PRO=4;QA=80932;QR=44298;RO=1277;RPL=2259;RPP=4882.37;RPPR=2749.98;RPR=4;RUN=1;SAF=2259;SAP=4882.37;SAR=4;SRF=1274;SRP=2749.98;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:9,5:9:307:5:180:-12.3376,0,-23.7453	1/1:26:0,26:0:0:26:921:-83.1188,-7.82678,0	1/1:42:0,40:0:0:40:1429:-128.239,-12.0412,0	1/1:73:0,72:0:0:72:2588:-232.826,-21.6742,0	0/1:22:6,16:6:216:16:576:-45.5072,0,-13.1679	0/1:10:6,4:6:214:4:144:-10.3033,0,-16.5975	1/1:51:0,51:0:0:51:1836:-165.5,-15.3525,0	0/1:45:29,16:29:1003:16:576:-38.5753,0,-77.0319	0/1:35:16,19:16:547:19:684:-51.3543,0,-39.0154	0/1:35:19,16:19:652:16:576:-41.6389,0,-48.4634	0/1:45:30,15:30:1052:15:540:-35.3856,0,-81.4428	1/1:60:0,59:0:0:59:2120:-190.568,-17.7608,0	0/1:41:22,19:22:786:19:680:-49.1787,0,-58.7226	0/1:59:33,26:33:1133:26:936:-66.7987,0,-84.4808	0/1:36:24,12:24:839:12:432:-28.3837,0,-64.9906	0/1:44:22,21:22:756:21:756:-55.0659,0,-55.06	0/1:41:22,19:22:756:19:684:-49.5481,0,-56.0153	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:25:0,25:0:0:25:896:-80.9237,-7.52575,0	0/1:40:14,26:14:491:26:921:-71.164,0,-32.4807	0/1:90:47,42:47:1606:42:1497:-107.813,0,-117.623	0/1:15:9,6:9:312:6:216:-15.2751,0,-23.8994	1/1:37:0,37:0:0:37:1328:-119.774,-11.1381,0	0/0:6:6,0:6:209:0:0:0,-1.80618,-19.1505	1/1:17:0,17:0:0:17:612:-55.4042,-5.11751,0	0/1:93:57,36:57:1971:36:1281:-87.5864,0,-149.668	0/1:79:39,39:39:1347:39:1389:-101.406,0,-97.6356	0/1:19:8,11:8:277:11:381:-28.8964,0,-19.5465	0/1:91:50,40:50:1757:40:1425:-101.082,0,-130.961	0/1:59:26,31:26:918:31:1112:-82.9386,0,-65.4823	0/1:44:24,20:24:834:20:720:-51.8835,0,-62.1315	1/1:11:0,11:0:0:11:362:-32.8958,-3.31133,0	1/1:1:0,1:0:0:1:21:-2.09995,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.04,-0.90309,0	0/1:6:1,5:1:36:5:180:-14.7319,0,-1.79209	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:106:47,56:47:1623:56:2001:-148.989,0,-114.992	1/1:39:0,39:0:0:39:1380:-124.404,-11.7402,0	0/1:26:14,12:14:500:12:432:-31.3767,0,-37.5097	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:48:20,28:20:691:28:993:-75.2238,0,-48.0613	0/1:17:8,8:8:274:8:288:-21.171,0,-19.8991	0/1:26:15,11:15:523:11:396:-28.156,0,-39.5726	0/1:26:16,10:16:564:10:360:-24.9175,0,-43.2622	0/1:24:15,9:15:522:9:324:-22.1865,0,-40.035	1/1:29:0,29:0:0:29:1036:-93.5526,-8.72987,0	1/1:8:0,8:0:0:8:288:-26.2592,-2.40824,0	1/1:34:0,33:0:0:33:1165:-104.777,-9.93399,0	0/1:23:12,11:12:427:11:396:-29.0567,0,-31.8448	0/1:67:34,33:34:1186:33:1169:-85.3435,0,-86.8714	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:6:5,1:5:173:1:36:-1.79209,0,-14.1032	1/1:22:0,22:0:0:22:777:-70.234,-6.62266,0	1/1:28:0,27:0:0:27:966:-86.7034,-8.12781,0	0/1:12:10,2:10:352:2:72:-3.22436,0,-28.4061	0/1:67:40,27:40:1388:27:968:-67.2684,0,-105.048	0/1:10:7,3:7:240:3:108:-7.06487,0,-18.9233	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.8173	0/1:15:10,5:10:348:5:180:-12.0366,0,-27.1392	0/1:35:22,13:22:764:13:464:-31.5615,0,-58.5428	0/1:71:31,39:31:1089:39:1381:-103.14,0,-76.8754	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:81:0,74:0:0:74:2641:-237.571,-22.2762,0	0/1:56:22,32:22:770:32:1152:-87.3674,0,-53.0075	0/1:47:22,25:22:756:25:870:-64.4589,0,-54.2077	1/1:14:0,13:0:0:13:464:-41.7439,-3.91339,0	0/1:32:17,14:17:588:14:504:-36.079,0,-43.6289	0/1:82:59,21:59:2049:21:756:-43.9273,0,-160.238	1/1:22:0,22:0:0:22:792:-71.6011,-6.62266,0	1/1:17:0,16:0:0:16:576:-51.8152,-4.81648,0	0/1:28:15,13:15:513:13:468:-34.0308,0,-38.0651	0/1:18:10,8:10:336:8:288:-20.8357,0,-25.1452	1/1:59:0,57:0:0:57:2048:-184.161,-17.1587,0	0/1:63:35,28:35:1187:28:1000:-71.3496,0,-88.1644	0/1:77:31,46:31:1056:46:1641:-124.752,0,-72.1635	1/1:69:0,69:0:0:69:2469:-222.328,-20.7711,0	1/1:32:0,31:0:0:31:1101:-99.0305,-9.33193,0	0/1:70:38,32:38:1337:32:1148:-82.33,0,-99.5577	1/1:11:0,11:0:0:11:396:-35.8782,-3.31133,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:29:18,11:18:604:11:392:-26.8902,0,-45.9459	0/1:93:47,46:47:1618:46:1652:-120.97,0,-117.899	0/1:25:13,12:13:433:12:427:-30.9681,0,-31.7645	1/1:34:0,34:0:0:34:1216:-109.742,-10.235,0	0/1:26:18,8:18:623:8:288:-18.4406,0,-48.5678	1/1:81:0,79:0:0:79:2840:-255.469,-23.7814,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:41:20,21:20:686:21:756:-56.0168,0,-49.7166	1/1:39:0,39:0:0:39:1384:-124.582,-11.7402,0	1/1:52:0,51:0:0:51:1832:-164.646,-15.3525,0	0/1:111:58,53:58:2044:53:1892:-137.129,0,-150.82	0/1:31:23,8:23:807:8:288:-16.9355,0,-63.6187	1/1:38:0,38:0:0:38:1368:-123.371,-11.4391,0	1/1:39:0,39:0:0:39:1400:-126.29,-11.7402,0
chr09	2547444	.	CGTCC	TGTCT,TGTCC	145979	PASS	AB=0.485912,0.510403;ABP=10.9639,7.3476;AC=131,57;AF=0.696809,0.303191;AN=188;AO=4723,2367;CIGAR=1X3M1X,1X4M;DP=7109;DPB=7109;DPRA=0,1.15204;EPP=10258.9,5142.89;EPPR=7.35324;GTI=1;LEN=5,1;MEANALT=1.85106,2.23438;MQM=59.9284,59.9823;MQMR=60;NS=94;NUMALT=2;ODDS=0.967528;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165813,84068;QR=72;RO=2;RPL=0,0;RPP=10258.9,5142.89;RPPR=7.35324;RPR=4723,2367;RUN=1,1;SAF=0,0;SAP=10258.9,5142.89;SAR=4723,2367;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:78:0,33,44:0:0:33,44:1172,1580:-224.371,-128.876,-118.942,-95.4918,0,-82.2465	1/1:22:0,22,0:0:0:22,0:776,0:-70.1622,-6.62266,0,-70.1622,-6.62266,-70.1622	1/1:93:0,93,0:0:0:93,0:3270,0:-294.525,-27.9958,0,-294.525,-27.9958,-294.525	1/1:136:0,136,0:0:0:136,0:4762,0:-428.725,-40.9401,0,-428.725,-40.9401,-428.725	1/2:39:0,20,18:0:0:20,18:689,635:-107.766,-51.803,-45.7824,-56.0539,0,-50.6353	1/2:41:0,20,21:0:0:20,21:713,752:-119.804,-61.6846,-55.664,-58.4764,0,-52.1548	1/1:100:0,100,0:0:0:100,0:3506,0:-315.747,-30.103,0,-315.747,-30.103,-315.747	1/2:130:0,76,54:0:0:76,54:2684,1916:-375.036,-156.462,-133.583,-218.928,0,-202.672	1/2:131:0,80,51:0:0:80,51:2792,1802:-374.196,-147.108,-123.026,-227.44,0,-212.088	1/2:66:0,28,38:0:0:28,38:989,1343:-190.271,-109.73,-101.301,-80.8935,0,-69.4543	1/2:33:0,14,19:0:0:14,19:501,680:-96.6643,-55.8096,-51.5952,-41.2124,0,-35.4929	1/1:68:0,67,1:0:0:67,1:2348,36:-211.221,-20.169,0,-208.284,-16.8718,-207.983	1/2:67:0,30,37:0:0:30,37:1066,1328:-195.549,-108.684,-99.6532,-87.2213,0,-76.0832	1/2:66:0,34,32:0:0:34,32:1183,1144:-189.824,-93.6366,-83.4015,-96.5398,0,-86.9068	1/2:54:0,27,26:0:0:27,26:956,936:-154.391,-76.5171,-68.3893,-78.0129,0,-70.1862	1/2:45:0,22,23:0:0:22,23:774,812:-129.484,-66.4772,-59.8546,-63.3594,0,-56.4357	1/2:22:0,12,10:0:0:12,10:422,360:-64.0807,-29.734,-26.1216,-34.7027,0,-31.6924	1/1:27:0,27,0:0:0:27,0:937,0:-84.6426,-8.12781,0,-84.6426,-8.12781,-84.6426	1/1:19:0,18,1:0:0:18,1:633,36:-56.9377,-5.41854,0,-53.9999,-2.1213,-53.6988	1/2:175:0,93,82:0:0:93,82:3249,2915:-502.188,-237.901,-209.906,-264.639,0,-239.955	1/2:127:0,72,55:0:0:72,55:2547,1925:-364.425,-156.968,-135.294,-207.808,0,-191.252	1/2:74:0,24,50:0:0:24,50:847,1760:-212.604,-143.632,-136.407,-69.3248,0,-54.2733	1/1:101:0,96,5:0:0:96,5:3348,180:-301.181,-28.8989,0,-286.493,-13.852,-284.988	1/2:89:0,41,47:0:0:41,47:1433,1672:-252.829,-136.259,-123.917,-116.563,0,-102.415	1/1:94:0,94,0:0:0:94,0:3323,0:-299.162,-28.2968,0,-299.162,-28.2968,-299.162	1/2:243:0,123,120:0:0:123,120:4329,4245:-698.518,-346.109,-309.082,-352.761,0,-316.638	1/2:197:0,98,97:0:0:98,97:3460,3452:-563.151,-281.389,-251.888,-281.811,0,-252.611	1/2:18:0,11,7:0:0:11,7:379,243:-50.8829,-20.1003,-16.7889,-31.1286,0,-29.0214	1/2:222:0,107,114:0:0:107,114:3746,4051:-634.887,-330.103,-297.892,-304.777,0,-270.46	1/2:93:0,38,55:0:0:38,55:1330,1946:-267.067,-158.858,-147.419,-108.56,0,-92.0035	1/2:56:0,29,27:0:0:29,27:1002,948:-158.919,-77.5068,-68.777,-81.76,0,-73.6322	1/1:4:0,4,0:0:0:4,0:136,0:-12.575,-1.20412,0,-12.575,-1.20412,-12.575	1/1:42:0,42,0:0:0:42,0:1472,0:-132.774,-12.6433,0,-132.774,-12.6433,-132.774	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:13:0,8,5:0:0:8,5:272,180:-37.0961,-15.0469,-12.6387,-22.4013,0,-20.8962	1/1:19:0,18,1:0:0:18,1:639,36:-57.4796,-5.41854,0,-54.5419,-2.1213,-54.2409	1/2:167:0,81,86:0:0:81,86:2868,3063:-483.621,-250.011,-225.627,-233.965,0,-208.077	1/1:146:0,146,0:0:0:146,0:5130,0:-461.839,-43.9504,0,-461.839,-43.9504,-461.839	1/2:32:0,18,14:0:0:18,14:642,500:-93.4569,-41.1218,-35.7032,-52.6919,0,-48.4775	1/1:1:0,1,0:0:0:1,0:35,0:-3.49863,-0.30103,0,-3.49863,-0.30103,-3.49863	1/2:156:0,72,84:0:0:72,84:2519,2982:-448.26,-243.324,-221.65,-205.288,0,-180.002	1/2:25:0,9,16:0:0:9,16:316,568:-72.3526,-46.6354,-43.9261,-26.0696,0,-21.2531	1/2:179:0,71,108:0:0:71,108:2502,3809:-514.206,-310.497,-289.124,-204.062,0,-171.55	1/2:34:0,12,22:0:0:12,22:421,788:-98.8808,-64.6221,-61.0098,-34.612,0,-27.9893	1/2:47:0,27,20:0:0:27,20:954,712:-136.079,-58.3861,-50.2582,-78.0474,0,-72.0268	1/1:178:0,178,0:0:0:178,0:6245,0:-562.105,-53.5833,0,-562.105,-53.5833,-562.105	1/1:101:0,101,0:0:0:101,0:3564,0:-320.973,-30.404,0,-320.973,-30.404,-320.973	1/1:138:0,138,0:0:0:138,0:4850,0:-436.624,-41.5421,0,-436.624,-41.5421,-436.624	1/2:97:0,41,55:0:0:41,55:1426,1959:-275.71,-159.776,-147.434,-116.032,0,-99.4751	1/2:71:0,34,37:0:0:34,37:1193,1320:-205.05,-107.964,-97.7288,-97.4402,0,-86.3021	1/1:57:0,57,0:0:0:57,0:1989,0:-179.285,-17.1587,0,-179.285,-17.1587,-179.285	1/2:11:0,8,3:0:0:8,3:275,108:-31.4923,-9.17208,-6.76384,-22.6756,0,-21.7725	1/1:115:0,113,2:0:0:113,2:3988,72:-358.756,-34.0164,0,-352.881,-27.7817,-352.279	1/1:62:0,62,0:0:0:62,0:2163,0:-194.932,-18.6639,0,-194.932,-18.6639,-194.932	1/2:10:0,5,5:0:0:5,5:169,180:-28.7352,-15.0469,-13.5418,-14.0372,0,-12.532	1/2:113:0,62,51:0:0:62,51:2164,1816:-324.381,-148.369,-129.705,-176.364,0,-161.012	1/2:59:0,32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chr09	2637094	.	G	A	57633.2	PASS	AB=0.509796;ABP=5.00979;AC=126;AF=0.677419;AN=186;AO=2921;CIGAR=1X;DP=4104;DPB=4104;DPRA=15.011;EPP=6345.88;EPPR=2517.84;GTI=4;LEN=1;MEANALT=1.01099;MQM=59.9709;MQMR=59.9552;NS=93;NUMALT=1;ODDS=1.40464;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102201;QR=40943;RO=1182;RPL=0;RPP=6345.88;RPPR=2517.84;RPR=2921;RUN=1;SAF=0;SAP=6345.88;SAR=2921;SRF=0;SRP=2569.69;SRR=1182;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:11,14:11:369:14:500:-37.8104,0,-26.0068	1/1:118:0,118:0:0:118:4135:-372.336,-35.5215,0	1/1:108:0,108:0:0:108:3764:-338.959,-32.5112,0	1/1:148:0,148:0:0:148:5188:-467.069,-44.5524,0	0/1:22:10,12:10:356:12:420:-31.5114,0,-25.7586	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	1/1:55:0,55:0:0:55:1932:-174.155,-16.5567,0	0/1:51:34,17:34:1177:17:604:-39.3381,0,-90.8769	0/1:26:20,6:20:667:6:203:-10.7744,0,-52.5131	0/1:25:17,8:17:586:8:280:-18.0136,0,-45.537	0/1:8:5,3:5:162:3:108:-7.66693,0,-12.4905	1/1:38:0,38:0:0:38:1311:-118.287,-11.4391,0	0/1:27:11,16:11:384:16:572:-43.6856,0,-26.7669	0/1:16:7,9:7:239:9:292:-21.7786,0,-17.0262	0/1:36:14,22:14:455:22:783:-59.9559,0,-30.4238	0/1:30:16,14:16:564:14:486:-35.0377,0,-42.0594	0/1:11:4,7:4:140:7:248:-19.3529,0,-9.63325	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:18:5,13:5:180:13:449:-35.3189,0,-11.1335	0/1:79:31,48:31:1076:48:1682:-127.883,0,-73.364	0/1:53:19,34:19:680:34:1172:-89.826,0,-45.5746	0/1:50:34,16:34:1186:16:559:-35.5861,0,-91.9918	1/1:40:0,40:0:0:40:1386:-125.033,-12.0412,0	0/1:29:16,13:16:546:13:460:-33.0055,0,-40.7319	1/1:21:0,21:0:0:21:735:-66.4714,-6.32163,0	0/1:83:38,45:38:1296:45:1580:-117.499,0,-91.9478	0/1:105:58,47:58:2005:47:1679:-119.788,0,-149.112	0/1:19:3,16:3:104:16:568:-45.7323,0,-3.98324	0/1:144:73,71:73:2532:71:2481:-180.191,0,-184.782	0/1:130:54,76:54:1910:76:2701:-204.2,0,-133.042	0/1:46:27,19:27:947:19:667:-46.5072,0,-71.6964	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:94:51,43:51:1745:43:1487:-105.823,0,-129.03	1/1:54:0,54:0:0:54:1857:-167.403,-16.2556,0	0/1:25:16,9:16:551:9:316:-21.2531,0,-42.3887	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:83:47,36:47:1672:36:1279:-90.427,0,-125.782	0/1:46:27,19:27:956:19:661:-45.9642,0,-72.5084	0/1:50:25,25:25:879:25:888:-65.1875,0,-64.3747	0/1:15:8,7:8:280:7:244:-17.784,0,-21.0239	0/1:22:11,11:11:365:11:384:-28.272,0,-26.5472	1/1:19:0,19:0:0:19:657:-59.4502,-5.71957,0	1/1:31:0,31:0:0:31:1064:-96.063,-9.33193,0	1/1:111:0,111:0:0:111:3899:-351.105,-33.4143,0	0/1:56:30,26:30:1046:26:920:-66.2594,0,-77.5882	0/1:69:23,46:23:801:46:1634:-126.576,0,-51.6354	1/1:39:0,39:0:0:39:1352:-121.976,-11.7402,0	0/1:8:2,6:2:72:6:208:-16.6508,0,-4.42848	1/1:81:0,81:0:0:81:2873:-258.808,-24.3834,0	1/1:40:0,40:0:0:40:1399:-126.204,-12.0412,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:78:28,50:28:978:50:1757:-134.93,0,-63.9919	0/1:28:14,14:14:492:14:504:-37.2693,0,-36.1835	0/0:5:5,0:5:161:0:0:0,-1.50515,-14.8066	0/1:10:7,3:7:248:3:104:-6.69251,0,-19.6539	0/1:14:4,10:4:127:10:352:-27.8038,0,-7.53001	0/1:44:24,20:24:824:20:704:-50.4392,0,-61.23	.:.:.:.:.:.:.:.	1/1:165:0,165:0:0:165:5764:-518.656,-49.67,0	0/1:45:27,18:27:940:18:644:-44.7442,0,-71.3645	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:54:0,54:0:0:54:1893:-170.646,-16.2556,0	0/1:73:22,51:22:770:51:1772:-137.782,0,-47.6441	0/1:79:41,38:41:1439:38:1338:-96.9371,0,-106.024	1/1:11:0,11:0:0:11:383:-34.8032,-3.31133,0	1/1:25:0,25:0:0:25:876:-79.157,-7.52575,0	0/1:26:14,12:14:464:12:395:-28.0385,0,-34.2494	0/1:17:5,12:5:176:12:409:-32.0179,0,-11.0675	1/1:38:0,38:0:0:38:1320:-119.094,-11.4391,0	0/1:54:30,24:30:1031:24:831:-58.8502,0,-76.8359	0/1:41:23,18:23:794:18:616:-43.4166,0,-59.4336	1/1:105:0,105:0:0:105:3697:-332.934,-31.6082,0	0/1:36:15,21:15:536:21:748:-56.8082,0,-37.7377	0/1:62:25,36:25:883:36:1261:-95.0675,0,-61.0651	1/1:6:0,6:0:0:6:197:-18.0513,-1.80618,0	1/1:74:0,74:0:0:74:2578:-232.266,-22.2762,0	0/1:66:33,33:33:1129:33:1175:-86.189,0,-82.0418	0/1:71:35,36:35:1202:36:1241:-90.6147,0,-87.1047	0/1:30:17,13:17:574:13:439:-30.8006,0,-42.9476	1/1:26:0,26:0:0:26:867:-78.3328,-7.82678,0	0/1:19:10,9:10:335:9:320:-23.4228,0,-24.7547	1/1:34:1,33:1:36:33:1153:-100.476,-6.63675,0	1/1:11:0,11:0:0:11:384:-34.8947,-3.31133,0	0/1:21:8,13:8:267:13:464:-35.7759,0,-18.0337	1/1:32:0,32:0:0:32:1108:-100.023,-9.63296,0	1/1:16:0,16:0:0:16:558:-50.5471,-4.81648,0	0/1:33:18,15:18:635:15:524:-37.5556,0,-47.543	0/1:39:25,14:25:842:14:491:-32.7809,0,-64.347	1/1:115:0,115:0:0:115:4006:-360.242,-34.6185,0	1/1:40:0,40:0:0:40:1357:-122.419,-12.0412,0
chr09	2637112	.	C	T	18595.1	PASS	AB=0.477417;ABP=13.5047;AC=60;AF=0.322581;AN=186;AO=1139;CIGAR=1X;DP=4086;DPB=4086;DPRA=0.831167;EPP=2390.22;EPPR=6203.99;GTI=5;LEN=1;MEANALT=1.0339;MQM=59.9526;MQMR=59.9562;NS=93;NUMALT=1;ODDS=0.152553;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40426;QR=105026;RO=2943;RPL=10;RPP=2390.22;RPPR=6203.99;RPR=1129;RUN=1;SAF=0;SAP=2476.32;SAR=1139;SRF=0;SRP=6393.65;SRR=2943;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:15,10:15:540:10:352:-24.4924,0,-41.4108	0/0:116:115,0:115:4107:0:0:0,-34.6184,-369.456	0/0:107:107,0:107:3814:0:0:0,-32.2102,-343.458	0/0:148:148,0:148:5265:0:0:0,-44.5524,-473.988	0/1:23:13,10:13:464:10:352:-25.0945,0,-35.1732	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/1:47:20,27:20:716:27:968:-73.289,0,-50.6193	0/1:27:6,21:6:216:21:748:-59.5141,0,-11.6627	0/1:23:8,15:8:284:15:532:-41.2894,0,-18.9797	0/1:8:3,5:3:108:5:176:-13.7764,0,-7.66693	0/0:36:36,0:36:1252:0:0:0,-10.8371,-112.979	0/1:28:17,11:17:580:11:396:-27.5539,0,-44.0905	0/1:17:10,7:10:351:7:252:-17.9114,0,-26.8092	0/1:35:22,13:22:788:13:468:-31.9236,0,-60.7087	0/1:29:13,16:13:468:16:572:-43.0836,0,-33.7298	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:17:13,4:13:459:4:140:-7.82707,0,-36.5266	0/1:78:50,28:50:1796:28:1000:-66.835,0,-138.442	0/1:52:33,19:33:1164:19:657:-43.7969,0,-89.4134	0/1:49:16,32:16:572:32:1136:-87.7398,0,-37.0043	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/1:28:11,17:11:392:17:600:-45.9004,0,-27.1912	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:81:44,37:44:1567:37:1313:-94.0863,0,-116.937	0/1:103:46,57:46:1656:57:2023:-151.336,0,-118.322	0/1:19:16,3:16:572:3:108:-4.3556,0,-46.0939	0/1:144:69,74:69:2460:74:2622:-192.818,0,-178.248	0/1:129:77,52:77:2760:52:1826:-125.784,0,-209.809	0/1:47:20,27:20:711:27:968:-73.289,0,-50.1672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:92:45,47:45:1594:47:1680:-123.792,0,-116.054	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:27:11,16:11:388:16:572:-43.6856,0,-27.1179	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:82:35,47:35:1256:47:1653:-124.37,0,-88.6608	0/1:43:19,24:19:684:24:856:-64.4168,0,-48.946	0/1:50:25,25:25:887:25:896:-65.9073,0,-65.0966	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:22:11,11:11:392:11:392:-28.9974,0,-28.9974	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:114:114,0:114:4067:0:0:0,-34.3174,-366.217	0/1:53:25,28:25:888:28:977:-72.2868,0,-64.2844	0/1:71:47,24:47:1688:24:840:-54.5423,0,-130.788	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:73:49,24:49:1760:24:843:-53.7203,0,-136.709	0/1:29:14,15:14:496:15:536:-39.8445,0,-36.2444	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:13:9,4:9:315:4:140:-9.03119,0,-24.7738	0/1:43:19,24:19:680:24:860:-64.7775,0,-48.5849	.:.:.:.:.:.:.:.	0/0:166:166,0:166:5931:0:0:0,-49.971,-532.625	0/1:46:19,27:19:680:27:968:-73.59,0,-47.6818	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:73:52,21:52:1868:21:748:-45.6701,0,-146.424	0/1:76:36,40:36:1292:40:1394:-102.875,0,-93.7055	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/1:25:11,14:11:392:14:504:-38.1723,0,-28.0943	0/1:16:12,4:12:432:4:136:-7.75906,0,-34.4047	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.139	0/1:54:24,30:24:845:30:1067:-80.0852,0,-60.1115	0/1:42:20,22:20:720:22:792:-58.9624,0,-52.4855	0/0:109:109,0:109:3889:0:0:0,-32.8123,-350.204	0/1:39:24,15:24:860:15:540:-37.1964,0,-65.9817	0/1:61:37,24:37:1332:24:860:-59.359,0,-101.82	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:68:36,32:36:1284:32:1118:-80.4534,0,-95.3934	0/1:67:36,31:36:1266:31:1108:-79.8616,0,-94.0721	0/1:26:11,15:11:396:15:532:-40.3863,0,-28.156	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/1:19:9,10:9:324:10:352:-26.2982,0,-23.7863	0/0:37:36,1:36:1288:1:36:0,-7.53983,-112.625	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:21:14,7:14:496:7:252:-16.7073,0,-38.6526	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	0/1:38:15,23:15:536:23:805:-61.3284,0,-37.1357	0/0:121:120,0:120:4266:0:0:0,-36.1236,-382.392	0/0:39:39,0:39:1373:0:0:0,-11.7402,-123.867
chr09	2637130	.	T	C	18775	PASS	AB=0.478477;ABP=12.7316;AC=60;AF=0.322581;AN=186;AO=1164;CIGAR=1X;DP=4185;DPB=4185;DPRA=0.823436;EPP=2530.6;EPPR=6528.33;GTI=5;LEN=1;MEANALT=1;MQM=59.9536;MQMR=59.9709;NS=93;NUMALT=1;ODDS=0.329081;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41570;QR=108079;RO=3021;RPL=1164;RPP=2530.6;RPPR=6528.33;RPR=0;RUN=1;SAF=0;SAP=2530.6;SAR=1164;SRF=0;SRP=6563.03;SRR=3021;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/0:122:122,0:122:4334:0:0:0,-36.7257,-390.235	0/0:111:111,0:111:3996:0:0:0,-33.4143,-359.827	0/0:158:158,0:158:5645:0:0:0,-47.5627,-508.17	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:52:21,31:21:752:31:1116:-85.0981,0,-52.3527	0/1:27:6,21:6:216:21:732:-58.0725,0,-11.6627	0/1:25:8,17:8:280:17:608:-47.5263,0,-18.0136	0/1:8:3,5:3:108:5:176:-13.7764,0,-7.66693	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:27:17,10:17:612:10:360:-24.6165,0,-47.2856	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:35:22,13:22:792:13:464:-31.5615,0,-61.0696	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3053	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/1:82:50,32:50:1800:32:1133:-77.5922,0,-137.598	0/1:53:35,18:35:1229:18:648:-42.6973,0,-94.9573	0/1:51:18,33:18:640:33:1176:-90.7952,0,-42.5768	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:30:13,17:13:449:17:600:-45.2983,0,-31.7066	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:86:47,39:47:1684:39:1400:-100.411,0,-125.957	0/1:106:47,59:47:1684:59:2120:-159.159,0,-119.938	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/1:146:73,73:73:2616:73:2590:-189.396,0,-191.737	0/1:130:77,53:77:2772:53:1908:-132.864,0,-210.586	0/1:49:21,28:21:756:28:1004:-75.9254,0,-53.6168	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:98:47,51:47:1688:51:1823:-134.85,0,-122.706	0/0:54:54,0:54:1906:0:0:0,-16.2556,-171.814	0/1:26:10,16:10:360:16:568:-43.6251,0,-24.8889	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:81:35,46:35:1260:46:1648:-124.225,0,-89.3221	0/1:45:19,26:19:680:26:932:-70.6525,0,-47.9828	0/1:45:24,21:24:864:21:756:-54.8193,0,-64.5362	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/1:56:26,30:26:917:30:1080:-80.6556,0,-65.9869	0/1:70:48,22:48:1724:22:788:-50.1727,0,-134.328	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.628	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:79:51,28:51:1824:28:980:-64.5381,0,-140.66	0/1:30:15,15:15:540:15:532:-39.1818,0,-39.9056	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/1:13:10,3:10:345:3:108:-6.16178,0,-27.4674	0/1:44:20,24:20:720:24:856:-64.1158,0,-51.8835	.:.:.:.:.:.:.:.	0/0:169:169,0:169:6061:0:0:0,-50.8741,-545.589	0/1:46:19,27:19:680:27:972:-73.9505,0,-47.6818	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:75:53,22:53:1900:22:788:-48.6675,0,-148.701	0/1:81:40,41:40:1410:41:1472:-108.393,0,-102.81	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:23:11,12:11:388:12:428:-31.9351,0,-28.3337	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:54:24,30:24:864:30:1076:-80.8959,0,-61.8269	0/1:43:20,23:20:712:23:824:-61.539,0,-51.4624	0/0:111:111,0:111:3950:0:0:0,-33.4143,-355.69	0/1:38:24,14:24:841:14:504:-34.259,0,-64.5672	0/1:62:37,25:37:1320:25:896:-62.2965,0,-100.438	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:72:72,0:72:2565:0:0:0,-21.6742,-231.099	0/1:70:36,34:36:1296:34:1220:-89.0347,0,-95.8718	0/1:70:36,34:36:1292:34:1190:-86.3294,0,-95.5117	0/1:30:13,17:13:468:17:604:-45.6597,0,-33.4287	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:19:9,10:9:324:10:360:-27.0243,0,-23.7863	0/0:39:38,1:38:1364:1:36:0,-8.14189,-119.462	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:22:14,8:14:504:8:280:-18.9166,0,-39.0754	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:31:14,17:14:504:17:612:-46.0815,0,-36.3662	0/1:35:14,21:14:504:21:718:-54.398,0,-35.162	0/0:123:123,0:123:4393:0:0:0,-37.0267,-394.152	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898
chr09	2862188	.	GTGCA	GTGCT	104489	PASS	AB=0.508723;ABP=6.53329;AC=124;AF=0.673913;AN=184;AO=5166;CIGAR=4M1X;DP=7806;DPB=7806;DPRA=28.5824;EPP=10987.5;EPPR=5570.88;GTI=1;LEN=1;MEANALT=1.42857;MQM=60;MQMR=60;NS=92;NUMALT=1;ODDS=1.3365;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184953;QR=91487;RO=2596;RPL=28;RPP=10979;RPPR=5570.88;RPR=5138;RUN=1;SAF=1;SAP=11212.2;SAR=5165;SRF=0;SRP=5640.15;SRR=2596;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:11,10:11:395:10:356:-26.0596,0,-29.5705	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:95:0,93:0:0:93:3332:-299.738,-27.9958,0	1/1:151:0,150:0:0:150:5358:-481.99,-45.1545,0	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:22:13,6:13:454:6:216:-13.7111,0,-35.1139	1/1:102:0,102:0:0:102:3642:-327.982,-30.7051,0	0/1:107:40,67:40:1414:67:2393:-183.415,0,-95.3465	0/1:60:32,28:32:1109:28:1008:-72.9746,0,-82.0529	0/1:68:32,36:32:1120:36:1292:-96.1137,0,-80.6374	0/1:140:69,71:69:2434:71:2533:-186.076,0,-177.172	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	0/1:82:37,44:37:1303:44:1580:-117.748,0,-92.828	0/1:145:69,76:69:2453:76:2730:-202.293,0,-177.376	0/1:61:25,36:25:888:36:1296:-98.5811,0,-61.8762	0/1:47:23,24:23:815:24:860:-63.5734,0,-59.5225	0/1:111:63,48:63:2206:48:1686:-118.608,0,-165.391	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	0/1:73:37,35:37:1314:35:1260:-91.8172,0,-96.6727	0/1:93:49,44:49:1694:44:1584:-114.856,0,-124.747	0/1:89:42,44:42:1490:44:1580:-116.243,0,-108.146	0/1:71:48,23:48:1686:23:813:-52.116,0,-130.652	1/1:19:0,19:0:0:19:665:-60.1728,-5.71957,0	0/1:36:18,18:18:636:18:644:-47.4535,0,-46.7307	1/1:61:0,61:0:0:61:2176:-196.107,-18.3628,0	0/1:231:105,125:105:3696:125:4481:-333.86,0,-263.248	0/1:173:92,80:92:3238:80:2868:-206.22,0,-239.507	0/1:26:9,17:9:324:17:588:-45.4161,0,-21.6791	0/1:261:104,154:104:3679:154:5494:-416.619,0,-253.349	0/1:75:30,45:30:1065:45:1620:-123.513,0,-73.5845	0/1:77:44,32:44:1543:32:1133:-79.0387,0,-115.923	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:7:0,6:0:0:6:216:-19.4307,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:206:99,107:99:3496:107:3840:-283.783,0,-252.84	0/1:221:103,115:103:3628:115:4114:-304.508,0,-260.794	0/1:102:56,45:56:1999:45:1620:-115.326,0,-149.421	0/1:8:2,6:2:66:6:216:-17.3823,0,-3.85971	0/1:85:40,45:40:1415:45:1612:-119.783,0,-102.059	0/1:58:21,37:21:728:37:1321:-101.731,0,-48.3793	0/1:70:35,35:35:1233:35:1260:-92.6334,0,-90.2015	0/1:86:52,33:52:1860:33:1177:-80.2894,0,-141.733	0/1:62:29,31:29:1017:31:1101:-80.977,0,-73.4205	1/1:71:1,70:1:35:70:2516:-223.193,-17.8745,0	1/1:103:0,103:0:0:103:3685:-331.851,-31.0061,0	1/1:138:0,136:0:0:136:4824:-433.952,-40.9401,0	0/1:70:30,40:30:1056:40:1436:-108.466,0,-74.277	0/1:112:49,62:49:1745:62:2228:-167.01,0,-123.56	1/1:69:0,69:0:0:69:2475:-223.003,-20.7711,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:112:0,110:0:0:110:3918:-352.481,-33.1133,0	1/1:35:1,34:1:35:34:1209:-105.616,-7.03742,0	0/1:19:9,9:9:310:9:324:-23.7275,0,-22.4565	0/1:120:72,48:72:2521:48:1728:-119.682,0,-191.019	0/1:40:23,17:23:813:17:597:-42.0149,0,-61.4496	.:.:.:.:.:.:.:.	0/1:10:2,8:2:70:8:288:-23.2571,0,-3.63703	0/1:59:26,32:26:918:32:1137:-84.8175,0,-65.1168	0/1:183:87,95:87:3103:95:3416:-252.506,0,-224.351	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:151:0,151:0:0:151:5405:-486.579,-45.4555,0	0/1:108:53,55:53:1896:55:1965:-144.613,0,-138.407	0/1:60:29,31:29:1008:31:1104:-81.6088,0,-72.9675	1/1:81:0,80:0:0:80:2868:-257.997,-24.0824,0	0/1:156:74,82:74:2600:82:2914:-215.532,0,-187.288	0/1:36:25,11:25:848:11:396:-25.1457,0,-65.7916	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:108:57,51:57:2020:51:1832:-132.65,0,-149.562	0/1:30:17,13:17:591:13:464:-33.0666,0,-44.4839	1/1:124:1,122:1:36:122:4350:-388.075,-33.7882,0	0/1:47:18,28:18:640:28:1008:-76.9738,0,-43.8644	0/1:155:71,84:71:2455:84:3002:-223.751,0,-174.545	1/1:117:0,116:0:0:116:4149:-373.232,-34.9195,0	0/1:107:70,37:70:2485:37:1332:-87.9722,0,-191.694	0/1:89:30,59:30:1069:59:2120:-164.277,0,-69.7307	.:.:.:.:.:.:.:.	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:83:53,30:53:1882:30:1076:-72.1674,0,-144.673	0/1:150:71,79:71:2493:79:2836:-210.324,0,-179.469	0/1:84:43,40:43:1514:40:1436:-104.192,0,-111.209	1/1:99:0,99:0:0:99:3564:-320.966,-29.802,0	0/1:77:39,37:39:1357:37:1328:-96.5842,0,-99.189	1/1:110:1,108:1:35:108:3878:-345.783,-29.5936,0	0/1:43:18,25:18:637:25:881:-66.6616,0,-44.7135	0/1:88:37,49:37:1296:49:1756:-132.076,0,-90.6911	1/1:66:0,66:0:0:66:2366:-213.198,-19.868,0	1/1:138:0,138:0:0:138:4968:-447.266,-41.5421,0	0/1:250:111,139:111:3903:139:4985:-373.538,0,-276.211	0/1:61:37,24:37:1286:24:856:-58.9983,0,-97.6772	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:99:0,97:0:0:97:3488:-313.77,-29.1999,0
chr09	3062502	.	T	G	42651.8	PASS	AB=0.304432;ABP=2589.26;AC=22;AF=0.117021;AN=188;AO=2406;CIGAR=1X;DP=34147;DPB=34147;DPRA=1.12004;EPP=5218.89;EPPR=68840.9;GTI=3;LEN=1;MEANALT=1.14706;MQM=57.4144;MQMR=59.7549;NS=94;NUMALT=1;ODDS=3.67381;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85094;QR=1119518;RO=31713;RPL=1403;RPP=147.414;RPPR=64457.9;RPR=1003;RUN=1;SAF=1402;SAP=145.974;SAR=1004;SRF=31194;SRP=64432.7;SRR=519;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:341:341,0:341:11968:0:0:0,-102.651,-1076.68	0/0:484:483,0:483:17149:0:0:0,-145.397,-1541.37	0/0:1146:1146,0:1146:40513:0:0:0,-344.98,-3644.82	0/0:940:940,0:940:33334:0:0:0,-282.968,-2998.48	0/0:382:382,0:382:13471:0:0:0,-114.993,-1211.98	0/0:258:258,0:258:9142:0:0:0,-77.6657,-822.239	0/0:494:493,0:493:17392:0:0:0,-148.408,-1564.5	0/0:880:879,1:879:31015:1:36:0,-261.317,-2786.09	0/0:452:451,1:451:15932:1:32:0,-132.87,-1428.75	0/0:229:229,0:229:8126:0:0:0,-68.9359,-730.932	0/0:216:215,0:215:7591:0:0:0,-64.7214,-682.608	0/0:269:269,0:269:9421:0:0:0,-80.9771,-847.69	0/0:212:212,0:212:7446:0:0:0,-63.8184,-669.727	0/0:170:170,0:170:5916:0:0:0,-51.1751,-531.838	0/0:205:205,0:205:7246:0:0:0,-61.7111,-651.862	0/0:159:157,2:157:5533:2:68:0,-41.4061,-490.488	0/0:124:123,0:123:4351:0:0:0,-37.0267,-391.231	0/0:94:93,0:93:3279:0:0:0,-27.9958,-294.22	0/0:106:106,0:106:3753:0:0:0,-31.9092,-337.947	0/0:427:427,0:427:15129:0:0:0,-128.54,-1361.2	0/0:522:522,0:522:18384:0:0:0,-157.138,-1653.86	0/0:418:418,0:418:14692:0:0:0,-125.831,-1322.01	0/0:561:561,0:561:19856:0:0:0,-168.878,-1784.96	0/1:343:269,74:269:9492:74:2648:-134.953,0,-750.742	0/0:402:401,1:401:14168:1:32:0,-117.815,-1270.99	0/1:1196:803,393:803:28512:393:13892:-889.528,0,-2202.92	0/0:542:542,0:542:19134:0:0:0,-163.158,-1721.03	0/1:125:84,41:84:2954:41:1409:-89.3847,0,-228.301	0/0:449:448,0:448:15901:0:0:0,-134.861,-1429.97	0/0:415:400,15:400:14145:15:532:0,-76.7319,-1224.5	0/1:508:340,168:340:12057:168:5965:-383.843,0,-931.412	0/1:33:15,18:15:540:18:621:-46.2615,0,-39.0025	0/0:70:70,0:70:2465:0:0:0,-21.0721,-222.079	0/1:42:32,10:32:1133:10:356:-19.7298,0,-89.6334	0/0:41:41,0:41:1447:0:0:0,-12.3422,-130.525	0/1:88:75,13:75:2634:13:468:-15.9362,0,-210.603	0/0:562:555,2:555:19524:2:72:0,-161.197,-1748.94	0/0:333:333,0:333:11840:0:0:0,-100.243,-1065.22	0/0:165:164,0:164:5782:0:0:0,-49.3689,-520.094	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:599:461,137:461:16312:137:4859:-255.586,0,-1286.82	0/1:149:97,52:97:3441:52:1838:-120.605,0,-265.035	0/0:960:958,0:958:33870:0:0:0,-288.387,-3045.41	0/0:201:201,0:201:7053:0:0:0,-60.507,-634.006	0/0:194:194,0:194:6823:0:0:0,-58.3998,-612.547	0/0:515:515,0:515:18175:0:0:0,-155.03,-1635.24	0/0:723:723,0:723:25687:0:0:0,-217.645,-2310.53	0/1:859:577,282:577:20399:282:9967:-637.387,0,-1575.22	0/0:335:335,0:335:11815:0:0:0,-100.845,-1063.03	0/0:607:606,0:606:21501:0:0:0,-182.424,-1934.2	0/0:259:259,0:259:9100:0:0:0,-77.9668,-818.979	0/0:32:32,0:32:1131:0:0:0,-9.63296,-102.098	0/1:492:348,144:348:12367:144:5108:-310.814,0,-964.02	0/0:278:278,0:278:9813:0:0:0,-83.6863,-882.525	0/1:40:24,13:24:842:13:459:-30.0799,0,-64.6036	0/1:729:578,151:578:20436:151:5366:-262.901,0,-1617.72	0/0:212:212,0:212:7492:0:0:0,-63.8184,-673.689	0/0:45:45,0:45:1598:0:0:0,-13.5463,-144.108	0/0:58:58,0:58:2051:0:0:0,-17.4597,-184.665	0/0:448:448,0:448:15879:0:0:0,-134.861,-1428.52	0/0:252:250,1:250:8823:1:36:0,-72.3001,-789.917	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:278:278,0:278:9759:0:0:0,-83.6863,-877.417	0/0:869:864,5:864:30530:5:180:0,-245.048,-2728.04	0/1:197:124,73:124:4387:73:2599:-174.7,0,-335.547	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:660:656,4:656:23035:4:140:0,-185.738,-2057.75	0/0:917:917,0:917:32417:0:0:0,-276.044,-2916.15	0/0:120:120,0:120:4241:0:0:0,-36.1236,-381.869	0/0:289:288,0:288:10112:0:0:0,-86.6966,-908.534	0/0:202:200,0:200:7066:0:0:0,-60.206,-635.085	0/1:16:4,12:4:144:12:413:-32.6695,0,-8.49714	0/0:485:484,1:484:16995:1:36:0,-142.401,-1525.31	0/1:317:216,101:216:7617:101:3566:-224.214,0,-590.081	0/0:957:957,0:957:33684:0:0:0,-288.086,-3028.58	0/0:464:463,0:463:16304:0:0:0,-139.377,-1466.25	0/1:832:568,264:568:20079:264:9353:-589.909,0,-1554.84	0/0:137:135,2:135:4824:2:72:0,-34.4216,-427.016	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:475:475,0:475:16808:0:0:0,-142.989,-1512.31	0/1:414:283,130:283:10032:130:4589:-288.101,0,-778.03	0/0:1019:1019,0:1019:35909:0:0:0,-306.75,-3228.71	0/0:200:199,1:199:7031:1:36:0,-56.6103,-629.194	0/0:257:256,0:256:8982:0:0:0,-77.0637,-808.014	0/0:144:144,0:144:5013:0:0:0,-43.3483,-450.082	0/0:362:362,0:362:12751:0:0:0,-108.973,-1146.88	0/0:61:61,0:61:2153:0:0:0,-18.3628,-193.486	0/1:177:93,84:93:3241:84:2950:-211.8,0,-238.41	0/1:172:100,72:100:3502:72:2518:-174.708,0,-263.503	0/0:118:118,0:118:4180:0:0:0,-35.5215,-376.379	0/1:275:210,65:210:7278:65:2308:-125.078,0,-572.283	0/1:182:109,73:109:3872:73:2570:-176.404,0,-293.74	0/0:754:753,0:753:26286:0:0:0,-226.676,-2364.17	0/0:346:345,0:345:12135:0:0:0,-103.855,-1091.44
chr09	3062612	.	A	G	976.874	PASS	AB=0.232251;ABP=1748.4;AC=18;AF=0.0978261;AN=184;AO=729;CIGAR=1X;DP=20942;DPB=20942;DPRA=0.857857;EPP=1586.01;EPPR=43882;GTI=13;LEN=1;MEANALT=1.08;MQM=26.4746;MQMR=32.8093;NS=92;NUMALT=1;ODDS=0.492623;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25888;QR=722416;RO=20207;RPL=2;RPP=1568.69;RPPR=24906.1;RPR=727;RUN=1;SAF=2;SAP=1568.69;SAR=727;SRF=2492;SRP=24906.1;SRR=17715;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:90:90,0:90:3196:0:0:0,-27.0927,-253.633	0/0:555:555,0:555:19856:0:0:0,-167.072,-1564.51	0/0:413:413,0:413:14791:0:0:0,-124.325,-1171.96	0/0:789:789,0:789:28229:0:0:0,-237.513,-2121.61	0/0:510:510,0:510:18175:0:0:0,-153.525,-1349.88	0/0:174:174,0:174:6221:0:0:0,-52.3792,-484.228	0/0:482:482,0:482:17222:0:0:0,-145.096,-1271.22	0/0:563:563,0:563:20113:0:0:0,-169.48,-1598.62	0/0:260:259,0:259:9268:0:0:0,-77.9668,-746.55	0/0:135:135,0:135:4835:0:0:0,-40.639,-371.06	0/0:72:72,0:72:2584:0:0:0,-21.6742,-181.406	0/0:78:78,0:78:2778:0:0:0,-23.4803,-213.735	0/0:94:94,0:94:3353:0:0:0,-28.2968,-262.028	0/0:101:100,1:100:3563:1:36:0,-27.6678,-255.436	0/0:124:124,0:124:4395:0:0:0,-37.3277,-328.548	0/0:71:71,0:71:2531:0:0:0,-21.3731,-187.522	0/0:68:67,0:67:2393:0:0:0,-20.169,-185.39	0/0:52:52,0:52:1846:0:0:0,-15.6536,-143.384	0/0:24:24,0:24:864:0:0:0,-7.22472,-66.5652	0/0:427:427,0:427:15281:0:0:0,-128.54,-1234.4	0/0:67:67,0:67:2380:0:0:0,-20.169,-193.838	0/0:652:652,0:652:23273:0:0:0,-196.272,-1815.24	0/0:480:480,0:480:17161:0:0:0,-144.494,-1292.35	0/1:289:242,47:242:8631:47:1684:-28.7101,0,-590.518	0/0:242:242,0:242:8642:0:0:0,-72.8493,-669.669	0/1:384:266,118:266:9552:118:4185:-162.71,0,-648.464	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.1677	0/1:41:28,13:28:1008:13:464:-19.6265,0,-60.5408	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.6631	0/0:214:214,0:214:7657:0:0:0,-64.4204,-612.708	0/1:368:319,49:319:11400:49:1747:-4.89318,0,-768.428	0/0:43:38,5:38:1368:5:176:0,-0.432782,-98.8396	0/0:45:45,0:45:1620:0:0:0,-13.5463,-131.794	0/0:10:9,1:9:324:1:36:0,-0.543394,-20.6979	0/0:44:43,0:43:1536:0:0:0,-12.9443,-124.392	0/0:32:29,3:29:1044:3:108:0,-2.72562,-77.8318	0/0:451:451,0:451:16132:0:0:0,-135.765,-1162.99	0/0:607:607,0:607:21649:0:0:0,-182.725,-1672.23	0/0:56:56,0:56:2016:0:0:0,-16.8577,-155.194	0/0:18:18,0:18:636:0:0:0,-5.41854,-49.1722	0/1:413:339,74:339:12151:74:2629:-55.7881,0,-820.418	0/1:54:47,7:47:1668:7:248:-1.18152,0,-113.185	0/0:812:812,0:812:29059:0:0:0,-244.436,-2208.72	0/0:138:138,0:138:4931:0:0:0,-41.5421,-358.684	0/0:87:87,0:87:3098:0:0:0,-26.1896,-218.424	0/0:338:338,0:338:12074:0:0:0,-101.748,-926.508	0/0:325:325,0:325:11612:0:0:0,-97.8347,-942.657	0/0:593:531,62:531:18965:62:2202:0,-31.0945,-1331.18	0/0:400:398,2:398:14227:2:72:0,-117.005,-1096.45	0/0:224:224,0:224:8032:0:0:0,-67.4307,-637.577	0/0:191:191,0:191:6863:0:0:0,-57.4967,-545.445	0/0:22:22,0:22:792:0:0:0,-6.62266,-63.3355	0/1:222:181,41:181:6481:41:1461:-23.7292,0,-449.137	0/0:87:87,0:87:3120:0:0:0,-26.1896,-239.858	0/0:9:9,0:9:320:0:0:0,-2.70927,-26.7366	0/1:178:122,56:122:4351:56:1972:-80.9954,0,-300.699	0/0:181:181,0:181:6459:0:0:0,-54.4864,-501.477	0/0:39:39,0:39:1396:0:0:0,-11.7402,-111.287	0/0:40:40,0:40:1436:0:0:0,-12.0412,-112.26	0/0:140:140,0:140:5028:0:0:0,-42.1442,-393.036	0/0:231:231,0:231:8245:0:0:0,-69.5379,-597.442	0/0:10:10,0:10:360:0:0:0,-3.0103,-27.6394	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.9086	0/0:786:786,0:786:28121:0:0:0,-236.61,-2152.45	0/1:38:19,19:19:684:19:676:-36.2386,0,-42.8149	.:.:.:.:.:.:.:.	0/0:596:594,1:594:21256:1:36:0,-176.702,-1661.58	0/0:315:314,0:314:11253:0:0:0,-94.5234,-880.549	0/0:31:31,0:31:1104:0:0:0,-9.33193,-76.7874	0/0:177:177,0:177:6337:0:0:0,-53.2823,-503.513	0/0:173:173,0:173:6188:0:0:0,-52.0782,-443.94	.:.:.:.:.:.:.:.	0/0:312:312,0:312:11167:0:0:0,-93.9214,-900.665	0/1:71:57,14:57:2035:14:500:-7.93301,0,-143.833	0/0:695:695,0:695:24823:0:0:0,-209.216,-1849.68	0/0:54:54,0:54:1932:0:0:0,-16.2556,-157.176	0/1:243:183,59:183:6545:59:2096:-55.8,0,-441.271	1/1:1:0,1:0:0:1:36:-2.46691,-0.30103,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.51525	0/0:280:280,0:280:10027:0:0:0,-84.2884,-780.455	0/1:196:131,65:131:4676:65:2303:-83.4538,0,-320.57	0/0:1310:1310,0:1310:46888:0:0:0,-394.349,-3567.09	0/0:263:263,0:263:9342:0:0:0,-79.1709,-696.602	0/0:88:88,0:88:3142:0:0:0,-26.4906,-227.786	0/0:120:120,0:120:4267:0:0:0,-36.1236,-307.535	0/0:221:221,0:221:7884:0:0:0,-66.5276,-565.329	0/0:59:59,0:59:2112:0:0:0,-17.7608,-166.701	0/1:92:72,20:72:2588:20:699:-15.3419,0,-177.775	0/1:76:47,29:47:1692:29:1032:-41.6308,0,-112.21	0/0:29:29,0:29:1032:0:0:0,-8.72987,-69.9134	0/1:63:50,13:50:1784:13:446:-12.4779,0,-112.238	0/1:75:48,27:48:1711:27:972:-41.9674,0,-102.463	0/0:499:497,2:497:17767:2:72:0,-144.41,-1325.07	0/0:206:206,0:206:7364:0:0:0,-62.0122,-538.049
chr09	3121373	.	TGC	CGC,CGT	74458.7	PASS	AB=0.532924,0.109962;ABP=35.182,2430.39;AC=115,18;AF=0.611702,0.0957447;AN=188;AO=3611,255;CIGAR=1X2M,1X1M1X;DP=5274;DPB=5274;DPRA=14.1667,1.05245;EPP=7844.2,556.736;EPPR=3019.19;GTI=6;LEN=1,3;MEANALT=1.77419,2.17544;MQM=59.9169,59.8902;MQMR=59.9899;NS=94;NUMALT=2;ODDS=1.07051;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=128949,8872;QR=49083;RO=1389;RPL=3611,255;RPP=7844.2,556.736;RPPR=3019.19;RPR=0,0;RUN=1,1;SAF=0,0;SAP=7844.2,556.736;SAR=3611,255;SRF=0;SRP=3019.19;SRR=1389;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:5,11,3:5:177:11,3:388,106:-30.0878,0,-11.1069,-22.96,-5.7857,-36.4752	1/1:38:0,36,0:0:0:36,0:1284,0:-115.556,-10.8371,0,-115.556,-10.8371,-115.556	1/1:92:0,84,8:0:0:84,8:2969,279:-267.09,-25.2865,0,-244.4,-2.24723,-241.992	1/1:86:0,83,3:0:0:83,3:2960,100:-266.021,-24.9855,0,-257.929,-16.5587,-257.026	0/1:29:12,17,0:12:414:17,0:608,0:-46.3175,0,-28.8584,-49.9299,-33.9759,-83.5558	0/1:21:7,14,0:7:244:14,0:500,0:-38.9776,0,-15.9772,-41.0849,-20.1916,-60.9253	1/1:31:0,31,0:0:0:31,0:1110,0:-100.211,-9.33193,0,-100.211,-9.33193,-100.211	0/1:71:45,26,0:45:1552:26,0:936,0:-63.1863,0,-118.59,-76.7327,-126.416,-202.795	0/1:64:25,38,1:25:889:38,1:1345,36:-102.023,0,-61.0045,-106.611,-69.506,-178.758	0/1:44:16,28,0:16:572:28,0:989,0:-76.0767,0,-38.5683,-80.8932,-46.9972,-127.535	0/1:42:15,23,4:15:513:23,4:820,140:-62.3326,0,-34.706,-55.4584,-30.2374,-95.8845	1/1:61:0,59,2:0:0:59,2:2108,72:-189.63,-17.7608,0,-183.755,-11.5261,-183.153	0/1:52:17,35,0:17:607:35,0:1260,0:-98.0519,0,-39.3083,-103.169,-49.8443,-152.656	0/1:51:23,27,1:23:814:27,1:972,28:-72.4636,0,-58.2465,-77.1714,-64.1587,-143.171	0/1:52:22,30,0:22:790:30,0:1063,0:-80.3273,0,-55.7718,-86.9499,-64.8027,-151.396	0/1:44:22,22,0:22:764:22,0:792,0:-58.3604,0,-55.8327,-64.983,-62.4554,-127.085	0/1:22:10,12,0:10:360:12,0:428,0:-32.2361,0,-26.1216,-35.2464,-29.734,-64.6221	1/1:27:0,24,2:0:0:24,2:845,70:-76.0153,-7.22472,0,-70.3201,-1.53536,-69.7181	0/1:13:8,4,1:8:288:4,1:144,36:-9.34143,0,-22.2952,-8.81225,-20.5619,-32.0106	0/1:120:63,57,0:63:2213:57,0:2012,0:-145.217,0,-163.31,-164.182,-180.469,-344.298	0/1:77:40,36,1:40:1418:36,1:1288,36:-92.9855,0,-104.679,-102.089,-112.578,-217.308	0/1:63:33,29,1:33:1170:29,1:1044,36:-75.2511,0,-86.5832,-82.2477,-92.3755,-177.262	1/1:95:0,95,0:0:0:95,0:3392,0:-305.495,-28.5979,0,-305.495,-28.5979,-305.495	0/1:5:3,2,0:3:108:2,0:72,0:-5.33157,0,-8.57002,-6.23466,-9.17208,-15.0469	1/1:45:0,44,1:0:0:44,1:1571,36:-141.316,-13.2453,0,-138.378,-9.94808,-138.077	0/1:150:65,83,2:65:2284:83,2:2979,72:-223.43,0,-160.909,-237.122,-180.019,-422.419	1/1:144:0,133,9:0:0:133,9:4763,295:-428.37,-40.037,0,-404.54,-16.1908,-401.831	0/1:20:10,8,2:10:356:8,2:288,72:-20.489,0,-26.6038,-17.6245,-23.1365,-46.0355	0/1:159:56,102,1:56:1995:102,1:3652,34:-280.981,0,-131.921,-295.081,-159.868,-457.39	0/1:41:21,20,0:21:739:20,0:712,0:-52.0644,0,-54.4895,-58.3861,-60.5101,-118.542	0/1:68:36,31,1:36:1281:31,1:1095,36:-78.2743,0,-95.0636,-86.1738,-101.458,-190.274	1/2:9:0,2,7:0:0:2,7:72,240:-25.706,-19.8273,-19.2253,-6.23466,0,-4.12745	1/2:34:0,25,9:0:0:25,9:896,324:-99.8718,-26.7966,-19.2708,-73.4346,0,-70.7253	1/2:46:0,15,31:0:0:15,31:540,1064:-130.798,-86.7311,-82.2156,-44.4211,0,-35.0892	1/2:47:5,30,12:5:180:30,12:1061,415:-103.929,-19.0213,-24.6816,-71.7134,0,-82.789	1/2:29:0,18,11:0:0:18,11:648,384:-84.452,-31.5716,-26.1531,-53.2333,0,-49.922	0/1:133:64,69,0:64:2291:69,0:2467,0:-182.246,0,-166.415,-201.512,-187.186,-388.341	0/1:83:40,43,0:40:1397:43,0:1540,0:-113.908,0,-101.04,-125.949,-113.984,-239.58	0/1:28:17,9,1:17:597:9,1:324,36:-21.3192,0,-45.8719,-23.4993,-45.6433,-71.7818	1/2:8:0,3,5:0:0:3,5:108,170:-22.9486,-14.1288,-13.2257,-9.17208,0,-7.66693	0/1:51:17,30,4:17:605:30,4:1060,144:-81.2038,0,-40.2735,-74.5709,-37.554,-122.675	0/1:24:11,11,2:11:394:11,2:396,72:-29.0003,0,-28.8193,-26.4368,-26.2555,-57.966	0/1:72:34,36,1:34:1200:36,1:1288,31:-94.8154,0,-86.8971,-102.563,-95.2469,-199.977	0/1:29:15,14,0:15:538:14,0:504,0:-36.9682,0,-40.0259,-41.4837,-44.2403,-85.3648	0/1:32:19,13,0:19:682:13,0:468,0:-32.8267,0,-52.0769,-38.5463,-55.9903,-94.1771	1/1:73:1,71,1:1:36:71,1:2552,36:-226.332,-18.4357,0,-223.695,-18.4357,-226.332	1/1:78:0,75,1:0:0:75,1:2675,26:-240.667,-22.5773,0,-238.63,-20.5717,-238.329	1/1:132:0,128,4:0:0:128,4:4576,144:-411.647,-38.5318,0,-399.897,-26.4223,-398.693	0/1:51:25,26,0:25:884:26,0:919,0:-67.6736,0,-64.5257,-75.1994,-72.3525,-147.198	0/1:53:30,23,0:30:1047:23,0:816,0:-57.8071,0,-78.5842,-66.838,-85.5079,-151.994	1/1:52:0,52,0:0:0:52,0:1864,0:-168.039,-15.6536,0,-168.039,-15.6536,-168.039	1/2:16:1,10,5:1:36:10,5:360,172:-39.8702,-11.015,-10.9448,-26.2073,0,-27.6398	1/1:116:0,114,1:0:0:114,1:4061,36:-365.367,-34.3174,0,-362.43,-31.3001,-362.129	1/2:22:1,19,2:1:36:19,2:676,72:-57.7254,-2.93742,-0.155265,-52.1512,0,-54.4867	1/2:21:0,9,12:0:0:9,12:304,410:-58.2515,-33.6137,-30.9044,-24.9772,0,-21.3648	0/1:72:20,46,6:20:710:46,6:1643,214:-127.933,0,-44.0016,-116.508,-40.4035,-172.5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chr09	3164330	.	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chr09	3431217	.	C	G	42656.3	PASS	AB=0.522899;ABP=24.6904;AC=63;AF=0.33871;AN=186;AO=2497;CIGAR=1X;DP=7098;DPB=7098;DPRA=1.23347;EPP=5416.49;EPPR=9974.42;GTI=0;LEN=1;MEANALT=1.01587;MQM=59.4842;MQMR=59.9663;NS=93;NUMALT=1;ODDS=1.47194;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89362;QR=164908;RO=4600;RPL=1;RPP=5416.49;RPPR=9974.42;RPR=2496;RUN=1;SAF=2497;SAP=5425.18;SAR=0;SRF=4600;SRP=9991.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/0:124:124,0:124:4444:0:0:0,-37.3277,-400.13	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:118:118,0:118:4221:0:0:0,-35.5215,-379.998	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4958	0/1:52:21,31:21:756:31:1108:-84.3774,0,-52.7128	0/0:118:117,1:117:4204:1:36:0,-31.9233,-374.941	0/1:101:41,60:41:1468:60:2160:-164.238,0,-102.012	0/1:85:40,45:40:1436:45:1612:-119.761,0,-103.95	0/1:59:38,21:38:1364:21:752:-50.2455,0,-105.3	0/1:31:15,16:15:540:16:576:-42.8145,0,-39.6046	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:44:21,23:21:756:23:828:-61.5808,0,-55.1219	0/1:63:27,36:27:968:36:1288:-97.245,0,-68.4725	0/1:53:32,21:32:1152:21:756:-52.3557,0,-88.0356	0/1:44:16,28:16:576:28:989:-76.0767,0,-38.9297	0/1:112:58,54:58:2088:54:1917:-139.064,0,-154.474	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:25:9,16:9:324:16:576:-44.6492,0,-21.9801	0/1:153:70,83:70:2507:83:2984:-222.585,0,-179.824	0/1:102:59,43:59:2120:43:1544:-108.39,0,-160.363	0/1:86:16,70:16:572:70:2489:-198.317,0,-25.9248	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.596	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.9615	0/1:340:125,215:125:4461:215:7724:-592.751,0,-299.31	0/0:144:144,0:144:5160:0:0:0,-43.3483,-464.54	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/1:260:100,160:100:3584:160:5721:-436.567,0,-244.498	0/1:137:68,69:68:2436:69:2471:-181.328,0,-178.253	0/1:93:48,45:48:1724:45:1616:-116.823,0,-127.45	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:142:77,65:77:2749:65:2336:-167.51,0,-204.904	0/1:273:140,133:140:5016:133:4731:-343.338,0,-369.405	0/1:34:12,22:12:432:22:788:-61.0042,0,-28.9862	.:.:.:.:.:.:.:.	0/1:100:39,61:39:1400:61:2177:-166.09,0,-96.1962	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	0/1:39:18,21:18:640:21:756:-56.5536,0,-46.1891	0/1:54:25,29:25:892:29:1044:-78.0192,0,-64.3441	0/1:36:14,22:14:500:22:784:-60.0122,0,-34.4991	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:106:106,0:106:3793:0:0:0,-31.9092,-341.553	0/0:152:152,0:152:5452:0:0:0,-45.7566,-490.773	0/1:130:58,72:58:2072:72:2550:-190.465,0,-147.617	0/1:117:66,51:66:2368:51:1836:-130.241,0,-178.158	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3601	0/1:140:61,79:61:2177:79:2825:-212.298,0,-154.05	0/1:44:27,17:27:964:17:612:-42.1396,0,-73.8315	0/1:4:2,2:2:72:2:72:-5.60271,0,-5.6326	0/1:17:8,9:8:284:9:324:-24.385,0,-20.7858	0/1:42:23,19:23:828:19:669:-47.8682,0,-62.2009	0/1:79:44,35:44:1580:35:1260:-89.8957,0,-118.71	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:237:236,1:236:8457:1:32:0,-68.1448,-757.896	0/1:140:85,55:85:3056:55:1972:-135.611,0,-233.124	0/1:48:22,25:22:792:25:892:-66.0385,0,-57.0974	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.844	0/1:138:62,76:62:2216:76:2713:-202.842,0,-158.163	0/1:54:13,41:13:468:41:1472:-116.463,0,-26.204	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:75:45,30:45:1612:30:1080:-74.936,0,-122.793	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:60:29,31:29:1044:31:1112:-82.3119,0,-76.213	0/1:115:63,52:63:2260:52:1857:-132.743,0,-169.044	0/0:134:134,0:134:4820:0:0:0,-40.338,-433.952	0/1:134:79,55:79:2840:55:1946:-134.986,0,-215.5	0/1:121:53,68:53:1908:68:2448:-184.113,0,-135.573	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.593	0/1:88:33,55:33:1188:55:1961:-150.238,0,-80.738	0/1:184:105,79:105:3768:79:2810:-197.629,0,-283.901	0/1:103:52,51:52:1859:51:1828:-133.707,0,-136.583	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:65:35,30:35:1260:30:1080:-77.9463,0,-94.1385	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.275	0/1:46:24,22:24:864:22:792:-57.7406,0,-64.2352	0/1:66:34,32:34:1224:32:1152:-84.1222,0,-90.5991	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.195	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	0/1:41:16,25:16:564:25:896:-68.6181,0,-38.7481	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524
chr09	3431232	.	T	C	91706.9	PASS	AB=0.478326;ABP=22.213;AC=123;AF=0.66129;AN=186;AO=4573;CIGAR=1X;DP=7042;DPB=7042;DPRA=25.7729;EPP=9794.67;EPPR=5226.09;GTI=0;LEN=1;MEANALT=1.08791;MQM=59.9628;MQMR=59.4957;NS=93;NUMALT=1;ODDS=0.967436;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163519;QR=88159;RO=2461;RPL=16;RPP=9794.67;RPPR=5226.09;RPR=4557;RUN=1;SAF=4573;SAP=9933.15;SAR=0;SRF=2461;SRP=5347;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:125:0,125:0:0:125:4487:-403.997,-37.6288,0	1/1:65:0,65:0:0:65:2327:-209.689,-19.567,0	1/1:118:0,118:0:0:118:4206:-378.562,-35.5215,0	0/1:31:11,20:11:396:20:716:-55.4358,0,-26.6508	0/1:52:31,21:31:1108:21:748:-51.9908,0,-84.3774	1/1:119:1,118:1:36:118:4230:-377.281,-32.2243,0	0/1:100:59,41:59:2111:41:1467:-102.222,0,-160.131	0/1:82:42,40:42:1496:40:1440:-105.213,0,-110.231	0/1:58:20,38:20:720:38:1360:-105.241,0,-47.669	0/1:31:16,15:16:576:15:531:-38.79,0,-42.8145	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:45:24,21:24:864:21:756:-54.8209,0,-64.5182	0/1:61:34,27:34:1220:27:955:-67.902,0,-91.744	0/1:52:20,32:20:716:32:1152:-88.3366,0,-49.0857	0/1:45:29,16:29:1044:16:576:-38.6286,0,-80.7285	0/1:111:53,58:53:1904:58:2075:-153.606,0,-138.172	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/1:152:82,69:82:2927:69:2448:-174.758,0,-217.701	0/1:101:43,58:43:1548:58:2072:-156.345,0,-109.051	0/1:83:67,16:67:2412:16:572:-26.8279,0,-192.294	1/1:87:0,87:0:0:87:3092:-278.479,-26.1896,0	0/1:22:11,11:11:392:11:396:-29.3601,0,-28.9974	1/1:28:0,28:0:0:28:995:-89.864,-8.42884,0	0/1:333:210,123:210:7532:123:4404:-296.29,0,-577.583	1/1:148:1,146:1:36:146:5193:-463.899,-41.013,0	0/1:22:9,13:9:320:13:468:-35.837,0,-22.5197	0/1:255:157,97:157:5620:97:3467:-235.42,0,-428.929	0/1:138:70,68:70:2504:68:2436:-177.952,0,-183.981	0/1:92:45,47:45:1588:47:1692:-124.872,0,-114.833	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:6:0,5:0:0:5:180:-16.1922,-1.50515,0	0/1:144:66,78:66:2364:78:2800:-208.888,0,-169.427	0/1:266:129,137:129:4619:137:4892:-360.358,0,-335.384	0/1:34:22,12:22:788:12:432:-28.9862,0,-61.0042	.:.:.:.:.:.:.:.	0/1:97:59,38:59:2112:38:1356:-93.1406,0,-161.144	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:37:20,17:20:716:17:587:-42.0149,0,-53.5562	0/1:54:30,24:30:1080:24:860:-61.4662,0,-81.2576	0/1:34:21,13:21:748:13:464:-31.8625,0,-57.3756	1/1:36:0,36:0:0:36:1285:-115.953,-10.8371,0	1/1:105:0,105:0:0:105:3767:-339.215,-31.6082,0	1/1:152:0,152:0:0:152:5444:-490.051,-45.7566,0	0/1:125:69,56:69:2476:56:1985:-141.294,0,-184.85	0/1:117:50,67:50:1783:67:2412:-182.115,0,-125.472	1/1:59:0,59:0:0:59:2094:-188.729,-17.7608,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:81:0,81:0:0:81:2907:-261.864,-24.3834,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:140:82,58:82:2948:58:2084:-145.686,0,-223.364	0/1:44:17,27:17:608:27:968:-74.192,0,-41.7782	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.60271	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.385	0/1:42:19,23:19:676:23:824:-61.8401,0,-48.5022	0/1:77:33,44:33:1188:44:1567:-118.142,0,-84.0209	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:235:1,234:1:36:234:8340:-746.979,-67.1438,0	0/1:140:54,86:54:1932:86:3072:-234.563,0,-132.012	0/1:47:25,22:25:900:22:788:-57.0964,0,-67.1277	1/1:57:0,57:0:0:57:2037:-183.599,-17.1587,0	0/1:137:75,62:75:2696:62:2212:-158.104,0,-201.611	0/1:53:41,12:41:1472:12:428:-22.9042,0,-116.764	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:49:0,48:0:0:48:1711:-153.915,-14.4494,0	0/1:76:31,45:31:1116:45:1612:-122.492,0,-77.8734	0/1:17:8,9:8:284:9:320:-24.0248,0,-20.7858	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:60:31,29:31:1107:29:1040:-75.8526,0,-81.8607	0/1:114:52,62:52:1868:62:2213:-165.117,0,-134.035	1/1:134:0,134:0:0:134:4811:-433.143,-40.338,0	0/1:132:53,78:53:1895:78:2775:-210.197,0,-130.941	0/1:118:66,52:66:2352:52:1864:-132.518,0,-176.383	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:103:0,102:0:0:102:3632:-326.719,-30.7051,0	0/1:86:53,33:53:1887:33:1188:-81.34,0,-144.184	0/1:185:78,107:78:2795:107:3831:-289.267,0,-195.856	0/1:103:51,52:51:1832:52:1864:-137.033,0,-133.784	1/1:49:0,49:0:0:49:1755:-158.233,-14.7505,0	0/1:65:30,35:30:1072:35:1260:-94.1385,0,-77.2255	1/1:107:0,107:0:0:107:3813:-343.366,-32.2102,0	0/1:45:21,24:21:747:24:864:-64.5362,0,-53.9903	0/1:66:32,34:32:1148:34:1220:-90.2388,0,-83.7619	1/1:64:0,64:0:0:64:2285:-205.896,-19.2659,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:33:16,17:16:572:17:604:-44.7561,0,-41.8794	0/1:41:26,15:26:936:15:536:-36.2326,0,-72.2172	1/1:94:0,93:0:0:93:3308:-297.578,-27.9958,0	1/1:75:0,75:0:0:75:2691:-242.434,-22.5773,0
chr09	3431240	.	T	C	42364.4	PASS	AB=0.523416;ABP=25.4847;AC=63;AF=0.33871;AN=186;AO=2479;CIGAR=1X;DP=7032;DPB=7032;DPRA=1.2711;EPP=5368.73;EPPR=9881.04;GTI=0;LEN=1;MEANALT=1;MQM=59.4881;MQMR=59.9657;NS=93;NUMALT=1;ODDS=1.38847;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88674;QR=163357;RO=4553;RPL=2477;RPP=5368.73;RPPR=9881.04;RPR=2;RUN=1;SAF=2479;SAP=5386.09;SAR=0;SRF=4553;SRP=9889.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:118:118,0:118:4224:0:0:0,-35.5215,-380.183	0/1:32:20,12:20:720:12:432:-29.5882,0,-55.4958	0/1:51:20,31:20:716:31:1112:-85.0388,0,-49.4152	0/0:117:116,1:116:4164:1:36:0,-31.6222,-371.343	0/1:102:41,61:41:1476:61:2141:-162.224,0,-102.431	0/1:82:40,42:40:1425:42:1499:-110.501,0,-103.861	0/1:58:37,21:37:1324:21:732:-48.7389,0,-102.002	0/1:31:15,16:15:540:16:576:-42.8145,0,-39.6046	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:44:20,24:20:716:24:860:-64.469,0,-51.5224	0/1:63:27,36:27:968:36:1292:-97.6051,0,-68.4725	0/1:53:32,21:32:1148:21:756:-52.3557,0,-87.6752	0/1:44:16,28:16:576:28:984:-75.6253,0,-38.9297	0/1:112:58,54:58:2073:54:1931:-140.316,0,-153.123	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:25:9,16:9:324:16:576:-44.6492,0,-21.9801	0/1:150:69,81:69:2484:81:2880:-214.156,0,-178.658	0/1:100:58,42:58:2088:42:1512:-106.114,0,-158.087	0/1:86:16,70:16:576:70:2494:-198.791,0,-26.2864	0/0:86:86,0:86:3061:0:0:0,-25.8886,-275.69	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:334:124,210:124:4437:210:7516:-575.847,0,-298.955	0/0:142:142,0:142:5104:0:0:0,-42.7463,-459.371	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:254:96,158:96:3448:158:5645:-431.542,0,-234.07	0/1:135:65,70:65:2328:70:2512:-185.603,0,-169.141	0/1:92:48,44:48:1720:44:1570:-113.303,0,-127.391	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:145:78,67:78:2808:67:2395:-171.914,0,-209.306	0/1:271:141,130:141:5064:130:4639:-335.959,0,-374.324	0/1:34:12,22:12:432:22:792:-61.3569,0,-28.9862	.:.:.:.:.:.:.:.	0/1:99:39,60:39:1391:60:2160:-164.86,0,-95.6863	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:39:17,22:17:612:22:775:-58.2576,0,-43.6733	0/1:55:25,30:25:896:30:1080:-80.9566,0,-64.4037	0/1:35:13,22:13:468:22:784:-60.3132,0,-31.9236	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.262	0/0:148:148,0:148:5297:0:0:0,-44.5524,-476.841	0/1:127:57,70:57:2044:70:2494:-186.312,0,-146.001	0/1:117:66,51:66:2376:51:1836:-130.241,0,-178.877	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:81:81,0:81:2916:0:0:0,-24.3834,-262.674	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:142:61,81:61:2188:81:2882:-216.843,0,-154.439	0/1:43:26,17:26:928:17:612:-42.4406,0,-70.894	0/1:4:2,2:2:72:2:72:-5.60271,0,-5.6326	0/1:17:8,9:8:288:9:324:-24.385,0,-21.1499	0/1:42:23,19:23:824:19:679:-48.7882,0,-61.8401	0/1:78:43,35:43:1548:35:1260:-90.1967,0,-116.133	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:238:237,1:237:8490:1:36:0,-68.0469,-760.455	0/1:137:83,54:83:2984:54:1936:-133.275,0,-227.55	0/1:47:22,25:22:792:25:896:-66.767,0,-57.4573	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.605	0/1:139:62,77:62:2224:77:2772:-207.845,0,-158.581	0/1:54:13,41:13:453:41:1472:-116.463,0,-24.844	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:74:45,29:45:1620:29:1044:-71.9986,0,-123.814	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:60:29,31:29:1036:31:1112:-82.3119,0,-75.4921	0/1:111:59,52:59:2109:52:1872:-135.297,0,-156.663	0/0:133:133,0:133:4769:0:0:0,-40.037,-429.364	0/1:134:80,54:80:2857:54:1924:-133.065,0,-217.028	0/1:120:53,67:53:1908:67:2403:-180.378,0,-135.874	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:105:105,0:105:3776:0:0:0,-31.6081,-340.031	0/1:86:32,54:32:1152:54:1927:-147.782,0,-78.1016	0/1:182:107,75:107:3829:75:2684:-186.806,0,-289.983	0/1:102:52,50:52:1854:50:1789:-130.54,0,-136.433	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:65:35,30:35:1260:30:1080:-77.9463,0,-94.1385	0/0:104:103,1:103:3692:1:36:0,-27.7088,-328.884	0/1:46:24,22:24:864:22:792:-57.7406,0,-64.2352	0/1:65:33,32:33:1184:32:1144:-83.7026,0,-87.3014	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.243	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	0/1:42:16,26:16:576:26:936:-71.9162,0,-39.5317	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528
chr09	3431269	.	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chr09	3431337	.	T	C	58901.1	PASS	AB=0.56561;ABP=222.415;AC=62;AF=0.329787;AN=188;AO=3326;CIGAR=1X;DP=9248;DPB=9248;DPRA=1.0201;EPP=7138.73;EPPR=12644.1;GTI=2;LEN=1;MEANALT=1.01538;MQM=57.902;MQMR=59.9664;NS=94;NUMALT=1;ODDS=0.257259;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118962;QR=208919;RO=5921;RPL=3316;RPP=7138.73;RPPR=12644.1;RPR=10;RUN=1;SAF=0;SAP=7225.33;SAR=3326;SRF=0;SRP=12860.3;SRR=5921;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:99:38,61:38:1336:61:2180:-165.755,0,-90.7379	0/0:103:103,0:103:3672:0:0:0,-31.0061,-330.685	0/0:140:140,0:140:4949:0:0:0,-42.1442,-444.864	0/0:347:347,0:347:12174:0:0:0,-104.457,-1095.53	0/1:58:25,33:25:892:33:1184:-89.3777,0,-63.1399	0/1:50:18,32:18:636:32:1152:-88.8216,0,-42.5165	0/0:84:84,0:84:2915:0:0:0,-25.2865,-262.586	0/1:116:46,70:46:1636:70:2512:-190.934,0,-112.609	0/1:139:48,91:48:1666:91:3260:-250.932,0,-108.38	0/1:75:45,30:45:1584:30:1080:-74.8984,0,-120.273	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.462	0/1:49:27,22:27:960:22:792:-56.6331,0,-71.9552	0/1:17:12,5:12:428:5:180:-11.408,0,-33.7413	0/1:40:24,16:24:826:16:572:-39.7304,0,-62.6089	0/1:42:26,16:26:932:16:576:-39.5171,0,-71.5556	0/1:18:8,10:8:284:10:352:-26.4887,0,-20.4848	0/0:14:14,0:14:481:0:0:0,-4.21442,-43.6151	0/1:9:3,6:3:108:6:216:-17.067,0,-7.3659	0/1:289:118,171:118:4208:171:6132:-464.763,0,-291.905	0/1:178:77,101:77:2724:101:3628:-272.792,0,-191.822	0/1:167:33,134:33:1180:134:4770:-378.934,0,-56.236	0/0:150:148,2:148:5257:2:72:0,-38.3178,-466.433	0/1:95:46,49:46:1628:49:1745:-128.497,0,-118.211	0/0:69:68,1:68:2420:1:36:0,-17.1728,-214.458	0/1:365:173,192:173:6110:192:6853:-506.419,0,-440.132	0/0:301:301,0:301:10622:0:0:0,-90.61,-955.907	0/1:5:1,4:1:36:4:144:-11.8047,0,-2.09312	0/1:401:189,211:189:6610:211:7580:-561.307,0,-474.203	0/1:162:63,99:63:2221:99:3537:-269.45,0,-151.331	0/1:166:69,97:69:2452:97:3484:-263.597,0,-170.965	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:28:13,15:13:445:15:525:-39.0795,0,-31.9465	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:108:52,56:52:1836:56:1993:-147.127,0,-133.009	0/1:158:61,97:61:2156:97:3450:-262.665,0,-146.744	0/1:20:9,11:9:320:11:396:-29.2195,0,-23.1218	1/1:2:0,2:0:0:2:72:-6.83481,-0.60206,0	0/1:155:77,78:77:2660:78:2804:-205.612,0,-192.984	0/1:13:10,3:10:348:3:108:-6.10189,0,-27.7417	0/1:178:66,112:66:2356:112:3989:-305.048,0,-158.716	0/1:30:15,15:15:532:15:536:-39.543,0,-39.1822	0/1:38:24,14:24:845:14:504:-34.2534,0,-64.928	0/0:140:140,0:140:4937:0:0:0,-42.1442,-444.487	0/0:105:105,0:105:3712:0:0:0,-31.6081,-334.282	0/0:139:139,0:139:4932:0:0:0,-41.8432,-444	0/1:94:45,49:45:1589:49:1747:-129.064,0,-114.973	0/1:123:44,79:44:1556:79:2824:-217.087,0,-103.305	0/0:133:133,0:133:4630:0:0:0,-40.037,-416.874	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:136:135,1:135:4752:1:36:0,-37.3418,-424.249	0/0:71:71,0:71:2505:0:0:0,-21.3731,-225.7	0/1:2:1,1:1:36:1:36:-2.99362,0,-2.99621	0/1:170:83,87:83:2921:87:3120:-229.737,0,-211.951	0/1:70:26,44:26:928:44:1584:-121.635,0,-62.7662	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:8:1,7:1:36:7:252:-20.616,0,-1.19003	0/1:87:39,48:39:1396:48:1724:-129.056,0,-99.7357	0/1:44:21,23:21:744:23:824:-61.1979,0,-54.039	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:209:208,1:208:7361:1:36:0,-59.317,-658.944	0/1:208:90,118:90:3174:118:4224:-317.425,0,-223.27	0/1:61:30,31:30:1045:31:1116:-82.304,0,-75.995	0/0:74:74,0:74:2574:0:0:0,-22.2762,-231.91	0/1:295:99,196:99:3514:196:6996:-540.632,0,-227.661	0/1:214:84,130:84:2984:130:4652:-354.217,0,-204.374	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:72:72,0:72:2528:0:0:0,-21.6742,-227.774	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	0/1:27:6,21:6:216:21:737:-58.4879,0,-11.6627	0/0:210:210,0:210:7355:0:0:0,-63.2163,-662.016	0/1:72:35,37:35:1224:37:1324:-97.6179,0,-88.7895	0/1:252:147,105:147:5202:105:3736:-260.227,0,-392.407	0/0:231:231,0:231:8067:0:0:0,-69.5379,-726.073	0/1:132:49,83:49:1764:83:2924:-223.138,0,-119.308	0/1:89:42,47:42:1476:47:1656:-122.426,0,-106.343	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:118:118,0:118:4153:0:0:0,-35.5215,-373.959	0/1:143:78,65:78:2760:65:2332:-166.451,0,-205.597	0/1:193:76,117:76:2647:117:4204:-319.868,0,-180.376	0/1:47:23,24:23:828:24:864:-63.8798,0,-60.6957	0/0:49:49,0:49:1740:0:0:0,-14.7505,-156.884	0/1:22:15,7:15:536:7:252:-16.4063,0,-41.9522	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919	0/1:20:14,6:14:504:6:216:-13.7497,0,-39.6775	0/1:40:24,16:24:856:16:576:-40.0962,0,-65.3199	0/0:44:44,0:44:1552:0:0:0,-13.2453,-139.969	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:27:18,9:18:595:9:324:-21.3698,0,-45.731	0/1:102:18,84:18:640:84:3008:-240.125,0,-27.2233	0/0:178:178,0:178:6329:0:0:0,-53.5833,-569.705	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035
chr09	3431359	.	A	G	58759.9	PASS	AB=0.565725;ABP=224.797;AC=62;AF=0.329787;AN=188;AO=3348;CIGAR=1X;DP=9335;DPB=9335;DPRA=0.957285;EPP=7273.1;EPPR=12994.9;GTI=2;LEN=1;MEANALT=1.04839;MQM=57.8886;MQMR=59.9654;NS=94;NUMALT=1;ODDS=0.351277;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119730;QR=213980;RO=5983;RPL=3348;RPP=7273.1;RPPR=12994.9;RPR=0;RUN=1;SAF=0;SAP=7273.1;SAR=3348;SRF=0;SRP=12994.9;SRR=5983;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:100:38,62:38:1353:62:2213:-168.433,0,-91.9654	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:142:142,0:142:5096:0:0:0,-42.7463,-457.761	0/0:348:348,0:348:12444:0:0:0,-104.758,-1119.8	0/1:59:26,33:26:936:33:1180:-88.717,0,-66.7987	0/1:52:19,33:19:684:33:1176:-90.3936,0,-46.2368	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.757	0/1:113:45,68:45:1616:68:2444:-185.723,0,-111.714	0/1:138:49,89:49:1760:89:3184:-244.178,0,-117.142	0/1:76:44,32:44:1565:32:1152:-81.0458,0,-118.261	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.34	0/1:48:26,22:26:924:22:792:-56.9341,0,-69.0282	0/1:17:12,5:12:424:5:172:-10.675,0,-33.3789	0/1:40:23,17:23:824:17:608:-42.969,0,-62.4421	0/1:42:26,16:26:932:16:576:-39.5171,0,-71.5556	0/1:17:7,10:7:252:10:360:-27.5048,0,-17.9114	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:9:3,6:3:108:6:216:-17.067,0,-7.3659	0/1:288:118,170:118:4236:170:6082:-460.596,0,-294.722	0/1:173:74,99:74:2660:99:3564:-268.518,0,-187.567	0/1:170:35,135:35:1260:135:4820:-382.528,0,-62.5304	0/0:152:149,2:149:5304:2:72:0,-38.8787,-470.708	0/1:96:48,48:48:1716:48:1720:-125.95,0,-125.827	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:368:174,194:174:6214:194:6912:-510.785,0,-448.575	0/0:309:309,0:309:11065:0:0:0,-93.0183,-995.736	0/1:5:1,4:1:36:4:144:-11.8047,0,-2.09312	0/1:405:191,214:191:6844:214:7638:-565.383,0,-494.103	0/1:163:62,101:62:2205:101:3624:-276.977,0,-149.622	0/1:168:70,98:70:2508:98:3493:-263.805,0,-175.399	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:28:13,15:13:468:15:540:-40.4371,0,-34.0308	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:108:52,56:52:1849:56:2008:-148.465,0,-134.177	0/1:160:64,96:64:2277:96:3440:-261.278,0,-157.023	0/1:20:9,11:9:324:11:388:-28.5454,0,-23.4853	1/1:2:0,2:0:0:2:72:-6.83481,-0.60206,0	0/1:155:75,80:75:2662:80:2864:-210.971,0,-193.164	0/1:13:9,4:9:324:4:144:-9.33995,0,-25.5925	0/1:184:72,112:72:2542:112:4015:-304.888,0,-173.639	0/1:29:15,14:15:540:14:500:-36.6063,0,-40.2067	0/1:37:23,14:23:820:14:504:-34.5544,0,-62.9844	0/0:141:141,0:141:5053:0:0:0,-42.4452,-454.913	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:142:142,0:142:5073:0:0:0,-42.7463,-456.678	0/1:99:47,52:47:1677:52:1845:-136.402,0,-121.385	0/1:123:44,79:44:1561:79:2820:-216.727,0,-103.753	0/0:137:137,0:137:4894:0:0:0,-41.2411,-440.609	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:141:141,0:141:5064:0:0:0,-42.4452,-455.901	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.924	0/1:2:1,1:1:36:1:36:-2.99362,0,-2.99621	0/1:176:86,90:86:3072:90:3232:-237.93,0,-223.728	0/1:69:26,43:26:902:43:1544:-118.339,0,-60.7193	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:2,7:2:72:7:252:-20.3149,0,-4.12745	0/1:84:38,46:38:1360:46:1644:-122.766,0,-97.4141	0/1:47:22,25:22:788:25:888:-66.0497,0,-57.0964	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:209:208,0:208:7410:0:0:0,-62.6142,-666.581	0/1:212:92,120:92:3296:120:4293:-322.504,0,-233.041	0/1:60:30,30:30:1057:30:1076:-79.0077,0,-77.3772	0/0:76:76,0:76:2700:0:0:0,-22.8783,-243.246	0/1:296:97,198:97:3472:198:7050:-545.14,0,-223.67	0/1:218:84,134:84:3020:134:4789:-365.383,0,-206.405	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.272	0/1:31:16,15:16:568:15:536:-39.2429,0,-42.1199	0/1:26:6,20:6:216:20:720:-57.2717,0,-11.9637	0/0:215:215,0:215:7673:0:0:0,-64.7214,-690.606	0/1:72:35,37:35:1252:37:1328:-97.9766,0,-91.3109	0/1:249:145,104:145:5192:104:3718:-259.498,0,-392.407	0/0:238:238,0:238:8525:0:0:0,-71.6451,-767.247	0/1:133:49,83:49:1747:83:2964:-226.404,0,-117.565	0/1:89:42,47:42:1504:47:1684:-124.943,0,-108.863	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:118:118,0:118:4224:0:0:0,-35.5215,-380.34	0/1:149:83,66:83:2953:66:2376:-168.507,0,-221.149	0/1:196:75,121:75:2672:121:4323:-330.143,0,-181.724	0/1:47:23,24:23:828:24:853:-62.8971,0,-60.6957	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/1:20:14,6:14:504:6:216:-13.7497,0,-39.6775	0/1:42:26,16:26:932:16:576:-39.4941,0,-71.5556	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.728	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:28:19,9:19:676:9:324:-21.0688,0,-52.7382	0/1:104:16,88:16:561:88:3126:-250.168,0,-19.5091	0/0:180:180,0:180:6453:0:0:0,-54.1854,-580.853	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755
chr09	3522443	.	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chr09	3539812	.	A	G	69377.2	PASS	AB=0.467237;ABP=34.5979;AC=126;AF=0.670213;AN=188;AO=3465;CIGAR=1X;DP=5274;DPB=5274;DPRA=0;EPP=7527.16;EPPR=3926.86;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9714;MQMR=59.9662;NS=94;NUMALT=1;ODDS=2.17136;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123930;QR=64695;RO=1807;RPL=3465;RPP=7527.16;RPPR=3926.86;RPR=0;RUN=1;SAF=0;SAP=7527.16;SAR=3465;SRF=0;SRP=3926.86;SRR=1807;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:18,17:18:633:17:612:-44.8774,0,-46.759	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:77:0,77:0:0:77:2745:-247.291,-23.1793,0	1/1:66:0,66:0:0:66:2356:-212.298,-19.868,0	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:38:15,23:15:536:23:811:-61.5988,0,-37.1357	0/1:57:24,33:24:849:33:1165:-87.9963,0,-59.5691	0/1:22:14,8:14:504:8:280:-18.9166,0,-39.0754	0/1:67:40,27:40:1436:27:953:-65.9143,0,-109.369	1/1:159:0,159:0:0:159:5704:-513.476,-47.8638,0	0/1:108:52,56:52:1860:56:2012:-148.842,0,-135.168	0/1:84:37,47:37:1332:47:1679:-126.11,0,-94.8959	0/1:97:54,43:54:1936:43:1535:-109.242,0,-145.316	0/1:94:56,38:56:2004:38:1360:-94.4038,0,-152.337	0/1:45:21,24:21:756:24:864:-64.5362,0,-54.8209	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:39:23,16:23:824:16:576:-40.4348,0,-62.7431	0/1:81:47,34:47:1680:34:1201:-84.0111,0,-127.104	0/1:85:30,55:30:1076:55:1968:-151.808,0,-71.5653	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:32:19,13:19:676:13:468:-32.8267,0,-51.535	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:48:27,21:27:964:21:748:-53.1959,0,-72.6274	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	0/1:48:21,27:21:756:27:968:-72.9879,0,-53.9178	0/1:107:64,43:64:2304:43:1544:-107.043,0,-175.41	0/1:81:32,49:32:1152:49:1760:-134.3,0,-79.6067	0/1:75:39,36:39:1377:36:1288:-93.5678,0,-101.631	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:39:35,4:35:1260:4:144:-1.57345,0,-101.965	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:164:82,82:82:2929:82:2939:-215.374,0,-214.472	0/1:27:16,11:16:561:11:396:-27.8549,0,-42.6893	0/1:61:34,27:34:1220:27:963:-68.6231,0,-91.744	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:66:39,27:39:1377:27:972:-67.9299,0,-104.359	0/1:51:35,16:35:1260:16:576:-36.8225,0,-98.353	0/1:71:39,32:39:1377:32:1152:-82.617,0,-102.854	0/1:64:31,33:31:1116:33:1188:-87.9627,0,-81.4858	0/1:84:39,45:39:1404:45:1598:-118.822,0,-101.373	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:48:0,48:0:0:48:1707:-153.916,-14.4494,0	0/1:31:16,15:16:572:15:540:-39.6046,0,-42.4815	0/1:31:19,12:19:684:12:432:-29.8893,0,-52.5584	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	0/1:22:14,8:14:500:8:288:-19.6447,0,-38.7135	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:55:27,28:27:972:28:1000:-73.7587,0,-71.2413	0/1:26:15,11:15:532:11:392:-27.7933,0,-40.3863	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/1:51:28,23:28:989:23:824:-59.1308,0,-73.9695	0/1:221:113,108:113:4060:108:3875:-282.416,0,-299.058	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:19:1,18:1:36:18:644:-54.6923,-2.1213,0	0/1:33:17,16:17:608:16:576:-42.241,0,-45.118	0/1:33:20,13:20:716:13:464:-32.1635,0,-54.8337	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:73:36,37:36:1292:37:1320:-97.1262,0,-94.6086	0/1:83:61,22:61:2192:22:788:-46.2593,0,-172.56	1/1:79:0,79:0:0:79:2822:-254.218,-23.7814,0	1/1:106:0,106:0:0:106:3792:-341.479,-31.9092,0	0/1:47:27,20:27:963:20:716:-50.6193,0,-72.8375	0/1:11:7,4:7:248:4:144:-10.0007,0,-18.9766	1/1:30:0,30:0:0:30:1059:-95.6129,-9.0309,0	0/1:37:17,20:17:608:20:716:-53.6296,0,-43.9139	0/1:89:51,38:51:1816:38:1360:-95.9089,0,-136.93	1/1:69:0,69:0:0:69:2453:-221.023,-20.7711,0	0/1:48:27,21:27:972:21:720:-50.6663,0,-73.3485	0/1:21:10,11:10:360:11:382:-28.3915,0,-26.4227	1/1:4:0,4:0:0:4:137:-12.6598,-1.20412,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:40:19,21:19:676:21:752:-55.9651,0,-49.1268	0/1:79:39,40:39:1392:40:1432:-105.396,0,-101.798	0/1:44:24,20:24:864:20:720:-51.8835,0,-64.8372	1/1:94:0,93:0:0:93:3335:-300.046,-27.9958,0	0/1:69:32,37:32:1148:37:1332:-99.4113,0,-82.8588	1/1:118:0,117:0:0:117:4161:-374.314,-35.2205,0	0/1:22:8,14:8:288:14:500:-38.7135,0,-19.6447	0/1:65:34,31:34:1224:31:1108:-80.464,0,-90.9001	1/1:162:0,162:0:0:162:5788:-521.034,-48.7669,0	1/1:85:0,85:0:0:85:3039:-273.74,-25.5876,0	0/1:106:51,55:51:1832:55:1972:-145.846,0,-133.252	0/1:73:45,28:45:1616:28:1008:-69.0612,0,-123.755	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:114:1,113:1:36:113:4047:-360.818,-30.7191,0
chr09	3543869	.	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chr09	3775948	.	G	T	177907	PASS	AB=0.486441;ABP=16.4358;AC=126;AF=0.670213;AN=188;AO=8872;CIGAR=1X;DP=13199;DPB=13199;DPRA=0;EPP=19268.3;EPPR=9385.94;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9395;MQMR=59.9956;NS=94;NUMALT=1;ODDS=8.57614;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=315807;QR=154732;RO=4321;RPL=8872;RPP=19268.3;RPPR=9385.94;RPR=0;RUN=1;SAF=0;SAP=19268.3;SAR=8872;SRF=0;SRP=9385.94;SRR=4321;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:33,26:33:1188:26:921:-65.4444,0,-89.4678	1/1:229:1,228:1:36:228:8112:-726.496,-65.3376,0	1/1:385:0,385:0:0:385:13752:-1237.46,-115.897,0	1/1:302:0,302:0:0:302:10723:-964.976,-90.9111,0	0/1:84:54,30:54:1919:30:1052:-69.7006,0,-147.7	0/1:63:30,33:30:1072:33:1180:-87.5416,0,-77.8276	1/1:277:0,277:0:0:277:9880:-888.987,-83.3853,0	0/1:196:83,113:83:2964:113:4015:-302.534,0,-207.989	0/1:152:72,80:72:2580:80:2835:-209.628,0,-186.693	0/1:150:85,65:85:3048:65:2313:-163.257,0,-229.395	0/1:90:29,61:29:1035:61:2162:-167.751,0,-66.3704	1/1:98:0,98:0:0:98:3509:-316.018,-29.5009,0	0/1:101:43,58:43:1544:58:2069:-156.075,0,-108.849	0/1:93:37,56:37:1320:56:1989:-151.286,0,-91.1062	0/1:69:29,40:29:1044:40:1424:-107.686,0,-73.5037	0/1:79:47,32:47:1684:32:1148:-79.8405,0,-128.066	0/1:121:57,63:57:2040:63:2215:-163.123,0,-147.389	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	0/1:56:27,29:27:972:29:1040:-77.0567,0,-70.9402	0/1:340:180,160:180:6402:160:5707:-411.393,0,-473.917	0/1:239:111,128:111:3964:128:4553:-337.981,0,-285.006	0/1:157:111,45:111:3954:45:1605:-97.4177,0,-308.729	1/1:46:0,46:0:0:46:1622:-146.265,-13.8474,0	0/1:239:105,134:105:3768:134:4788:-359.127,0,-267.372	1/1:126:0,126:0:0:126:4494:-404.582,-37.9298,0	0/1:354:169,185:169:6060:185:6538:-481.938,0,-438.937	1/1:220:1,219:1:36:219:7745:-693.483,-62.6283,0	0/1:42:29,13:29:1044:13:468:-29.8164,0,-81.6315	0/1:356:187,169:187:6688:169:5958:-429.158,0,-494.831	0/1:176:71,105:71:2543:105:3700:-280.195,0,-176.139	0/1:139:64,75:64:2304:75:2649:-196.809,0,-165.777	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:33:13,20:13:468:20:701:-53.4777,0,-32.5257	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:20:15,5:15:540:5:165:-9.153,0,-42.9159	1/1:29:0,29:0:0:29:1010:-91.207,-8.72987,0	0/1:223:99,124:99:3528:124:4456:-334.079,0,-250.598	0/1:281:147,134:147:5284:134:4763:-344.236,0,-391.103	0/1:120:61,59:61:2183:59:2106:-153.686,0,-160.612	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:285:154,131:154:5520:131:4689:-336.375,0,-411.131	0/1:61:33,28:33:1173:28:1000:-71.951,0,-87.5127	0/1:200:97,103:97:3475:103:3667:-270.024,0,-252.755	0/1:86:51,35:51:1836:35:1242:-86.1952,0,-139.632	0/1:66:31,35:31:1116:35:1226:-90.7717,0,-80.8837	1/1:68:0,68:0:0:68:2425:-218.502,-20.47,0	1/1:162:0,162:0:0:162:5783:-520.563,-48.7669,0	1/1:214:1,213:1:36:213:7542:-675.219,-60.8221,0	0/1:152:93,59:93:3328:59:2090:-142.61,0,-253.981	0/1:222:116,106:116:4134:106:3750:-270.871,0,-305.413	1/1:242:1,241:1:32:241:8594:-770.213,-69.6499,0	0/1:30:14,16:14:500:16:542:-40.0668,0,-36.3053	1/1:366:0,366:0:0:366:12987:-1168.52,-110.177,0	1/1:96:0,96:0:0:96:3413:-307.377,-28.8989,0	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	0/1:202:103,99:103:3688:99:3539:-257.909,0,-271.315	0/1:25:10,15:10:360:15:540:-41.4108,0,-25.2186	0/1:14:4,10:4:140:10:360:-28.5299,0,-8.73016	0/1:34:18,16:18:648:16:572:-41.5784,0,-48.4169	0/1:121:46,75:46:1648:75:2668:-203.941,0,-112.184	0/1:123:64,59:64:2292:59:2116:-153.552,0,-169.515	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	1/1:157:0,157:0:0:157:5585:-502.771,-47.2617,0	0/1:259:134,125:134:4804:125:4480:-325.402,0,-354.548	0/1:97:45,52:45:1620:52:1857:-138.208,0,-116.89	1/1:148:0,148:0:0:148:5263:-473.748,-44.5524,0	0/1:180:93,87:93:3325:87:3120:-226.755,0,-245.276	0/1:216:139,77:139:4992:77:2739:-181.728,0,-384.403	1/1:61:0,61:0:0:61:2181:-196.554,-18.3628,0	1/1:175:2,171:2:72:171:6137:-545.395,-45.6013,0	0/1:102:42,60:42:1503:60:2141:-162.251,0,-104.859	0/1:39:24,15:24:860:15:540:-37.1964,0,-65.9817	1/1:139:0,139:0:0:139:4955:-445.989,-41.8432,0	0/1:94:43,51:43:1532:51:1793:-133.351,0,-109.876	0/1:233:97,136:97:3488:136:4869:-368.219,0,-243.99	1/1:253:0,253:0:0:253:9009:-810.787,-76.1606,0	0/1:177:100,77:100:3596:77:2718:-191.58,0,-270.563	0/1:174:109,64:109:3908:64:2270:-152.077,0,-299.475	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:193:0,193:0:0:193:6867:-618.097,-58.0988,0	0/1:200:106,94:106:3799:94:3380:-244.208,0,-281.901	0/1:378:230,147:230:8240:147:5220:-356.083,0,-627.754	0/1:92:46,46:46:1656:46:1626:-118.928,0,-121.634	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	0/1:73:28,45:28:1008:45:1608:-123.034,0,-69.0612	1/1:142:0,142:0:0:142:5096:-458.782,-42.7463,0	0/1:44:27,17:27:968:17:612:-42.1681,0,-74.192	0/1:72:44,28:44:1575:28:993:-68.0083,0,-120.367	1/1:93:0,93:0:0:93:3310:-298.116,-27.9958,0	1/1:97:0,97:0:0:97:3469:-311.993,-29.1999,0	0/1:143:56,87:56:2012:87:3065:-233.03,0,-138.306	0/1:129:99,30:99:3524:30:1068:-57.5537,0,-278.536	1/1:156:0,156:0:0:156:5555:-499.505,-46.9607,0	1/1:119:1,118:1:36:118:4240:-378.151,-32.2243,0
chr09	3781344	.	A	G	30991	PASS	AB=0.513392;ABP=8.18642;AC=64;AF=0.340426;AN=188;AO=1720;CIGAR=1X;DP=5211;DPB=5211;DPRA=1.05696;EPP=3267.37;EPPR=6875.5;GTI=0;LEN=1;MEANALT=1.03125;MQM=59.9913;MQMR=59.9903;NS=94;NUMALT=1;ODDS=1.62233;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61487;QR=124846;RO=3489;RPL=1719;RPP=3729.26;RPPR=7475.41;RPR=1;RUN=1;SAF=55;SAP=3275.49;SAR=1665;SRF=71;SRP=6975.13;SRR=3418;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:16,9:16:572:9:324:-21.9801,0,-44.2877	0/0:77:75,2:75:2685:2:68:0,-16.7216,-235.435	0/0:121:121,0:121:4313:0:0:0,-36.4246,-388.346	0/0:154:153,1:153:5450:1:36:0,-42.7603,-487.03	0/1:37:17,20:17:612:20:712:-53.2685,0,-44.2753	0/1:32:15,17:15:536:17:612:-45.7805,0,-38.928	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:61:31,30:31:1104:30:1072:-78.4296,0,-81.3078	0/1:35:9,26:9:324:26:932:-73.6628,0,-18.9698	0/1:67:31,35:31:1112:35:1251:-92.8122,0,-80.3087	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.802	0/1:31:14,17:14:504:17:612:-46.0815,0,-36.3662	0/1:25:15,10:15:540:10:356:-24.8483,0,-41.4108	0/1:35:19,16:19:669:16:572:-41.2774,0,-49.9979	0/1:31:14,17:14:500:17:612:-46.0815,0,-36.0042	0/1:19:6,13:6:216:13:459:-35.9222,0,-14.0709	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:87:45,42:45:1612:42:1495:-108.654,0,-119.18	0/1:141:52,89:52:1857:89:3150:-241.279,0,-124.962	0/1:31:12,19:12:413:19:680:-52.1972,0,-28.1659	0/0:82:82,0:82:2924:0:0:0,-24.6845,-263.393	0/1:54:29,25:29:1044:25:891:-64.2532,0,-78.0192	0/0:44:44,0:44:1546:0:0:0,-13.2453,-139.428	0/1:226:120,106:120:4316:106:3783:-272.636,0,-320.581	0/0:149:149,0:149:5344:0:0:0,-44.8535,-481.092	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/1:179:81,98:81:2904:98:3505:-261.774,0,-207.711	0/1:68:42,26:42:1488:26:936:-64.0894,0,-113.742	0/1:92:40,52:40:1421:52:1859:-139.894,0,-100.491	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:87:34,53:34:1224:53:1908:-145.808,0,-84.2774	0/1:69:35,34:35:1237:34:1224:-89.696,0,-90.8612	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:92:51,41:51:1828:41:1468:-104.721,0,-137.106	0/1:14:7,7:7:243:7:252:-18.8145,0,-17.9931	0/1:67:45,22:45:1607:22:792:-51.4367,0,-124.75	0/1:26:10,16:10:360:16:572:-43.9866,0,-24.9175	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:81:39,42:39:1396:42:1496:-110.549,0,-101.556	0/1:60:27,33:27:972:33:1184:-88.8065,0,-69.7361	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:82:82,0:82:2937:0:0:0,-24.6845,-264.562	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:82:44,38:44:1576:38:1355:-97.5652,0,-117.447	0/1:20:12,8:12:419:8:288:-20.2468,0,-32.0221	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:52:34,18:34:1220:18:644:-42.637,0,-94.4532	0/1:59:25,34:25:900:34:1224:-92.7063,0,-63.5602	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:104:104,0:104:3721:0:0:0,-31.3071,-335.09	0/1:112:59,53:59:2116:53:1891:-136.752,0,-156.993	0/1:69:42,27:42:1508:27:956:-65.5847,0,-115.244	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/1:108:58,50:58:2084:50:1792:-129.051,0,-155.049	0/1:164:64,100:64:2300:100:3588:-273.757,0,-157.892	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2753	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/1:66:39,27:39:1396:27:948:-65.7639,0,-106.071	0/1:148:75,73:75:2677:73:2588:-188.615,0,-196.621	0/0:160:160,0:160:5714:0:0:0,-48.1648,-514.375	0/1:43:24,19:24:864:19:680:-48.5849,0,-65.1383	0/1:73:29,44:29:1040:44:1580:-120.516,0,-71.9392	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:54:22,31:22:780:31:1108:-83.7167,0,-54.2089	0/1:155:81,74:81:2912:74:2644:-191.547,0,-215.655	0/1:47:16,31:16:572:31:1116:-86.6033,0,-37.665	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/0:47:45,2:45:1620:2:72:0,-7.31169,-139.253	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	0/1:27:13,14:13:453:14:504:-37.5703,0,-32.9718	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:48:19,29:19:680:29:1036:-79.1045,0,-47.0797	0/1:37:15,22:15:540:22:784:-59.7458,0,-37.7984	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061
chr09	3789163	.	G	A	40917	PASS	AB=0.502987;ABP=3.38645;AC=61;AF=0.324468;AN=188;AO=2450;CIGAR=1X;DP=7600;DPB=7600;DPRA=1.2098;EPP=3277.13;EPPR=6727.6;GTI=2;LEN=1;MEANALT=1.01493;MQM=36.6959;MQMR=59.6193;NS=94;NUMALT=1;ODDS=0.500592;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87619;QR=182446;RO=5146;RPL=2186;RPP=3277.13;RPPR=6727.6;RPR=264;RUN=1;SAF=2450;SAP=5323.12;SAR=0;SRF=5146;SRP=11177.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:25,12:25:891:12:428:-19.4504,0,-69.3461	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.748	0/0:117:117,0:117:4174:0:0:0,-35.2205,-375.737	0/0:213:212,1:212:7525:1:36:0,-60.6649,-673.789	0/1:33:21,12:21:748:12:432:-15.7939,0,-57.6933	0/1:28:21,7:21:747:7:252:-10.2901,0,-59.1164	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.504	0/1:92:42,50:42:1487:50:1800:-111.613,0,-106.094	0/1:92:35,57:35:1247:57:2031:-131.131,0,-84.8311	0/1:99:40,59:40:1440:59:2116:-149.951,0,-100.076	0/1:69:45,24:45:1593:24:860:-53.7221,0,-122.871	0/0:102:102,0:102:3572:0:0:0,-30.7051,-321.633	0/1:90:41,49:41:1442:49:1752:-116.557,0,-102.982	0/1:86:49,37:49:1729:37:1328:-86.7688,0,-129.994	0/1:67:31,36:31:1073:36:1283:-89.8653,0,-76.7017	0/1:65:33,32:33:1153:32:1140:-76.3951,0,-84.5039	0/1:48:19,29:19:680:29:1032:-70.5288,0,-47.0791	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.419	0/1:42:20,22:20:712:22:788:-52.9268,0,-51.7634	0/1:129:72,57:72:2584:57:2048:-127.831,0,-193.884	0/1:125:61,64:61:2134:64:2287:-156.102,0,-154.685	0/1:229:95,134:95:3386:134:4818:-319.924,0,-235.521	0/0:66:66,0:66:2309:0:0:0,-19.868,-208.057	0/1:50:35,15:35:1240:15:516:-28.9639,0,-96.7012	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.618	0/1:167:84,83:84:2994:83:2988:-197.992,0,-219.178	0/0:168:168,0:168:5944:0:0:0,-50.573,-535.013	0/1:34:17,17:17:600:17:612:-41.595,0,-43.9639	0/1:271:134,137:134:4766:137:4912:-336.157,0,-347.496	0/1:117:63,54:63:2245:54:1911:-122.787,0,-167.082	0/1:135:50,85:50:1761:85:3023:-210.579,0,-118.084	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:19:8,11:8:288:11:396:-24.8716,0,-20.5478	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7822	0/1:11:9,2:9:320:2:57:-1.805,0,-25.8301	0/0:12:12,0:12:414:0:0:0,-3.61236,-37.5861	0/1:183:100,82:100:3490:82:2926:-199.415,0,-259.172	0/1:86:41,45:41:1464:45:1616:-90.8361,0,-106.167	0/1:55:36,19:36:1254:19:684:-38.5109,0,-96.5933	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:110:51,59:51:1811:59:2116:-142.425,0,-130.153	0/1:58:34,24:34:1208:24:851:-54.4466,0,-91.5617	0/1:125:76,49:76:2723:49:1756:-82.0638,0,-207.677	0/1:51:26,25:26:919:25:891:-60.0048,0,-67.6599	0/1:50:25,25:25:875:25:888:-61.6051,0,-64.0099	0/0:89:88,1:88:3133:1:36:0,-23.289,-278.598	0/0:117:117,0:117:4173:0:0:0,-35.2205,-375.676	0/0:118:117,1:117:4115:1:36:0,-32.067,-367.071	0/1:78:51,27:51:1832:27:968:-55.0138,0,-141.66	0/1:77:36,41:36:1283:41:1467:-102.404,0,-92.5526	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.452	0/1:5:1,4:1:36:4:144:-11.1327,0,-2.09312	0/0:100:100,0:100:3553:0:0:0,-30.103,-319.977	0/0:61:61,0:61:2161:0:0:0,-18.3628,-194.696	0/1:18:3,15:3:108:15:536:-39.2265,0,-4.65663	0/1:113:58,55:58:2071:55:1972:-129.924,0,-152.605	0/1:37:18,19:18:636:19:684:-41.0753,0,-46.4228	0/1:11:7,4:7:252:4:144:-9.64866,0,-19.7176	0/1:7:5,2:5:180:2:72:-4.54792,0,-14.4365	0/1:65:31,34:31:1108:34:1216:-80.3871,0,-80.464	0/1:106:61,45:61:2158:45:1611:-105.829,0,-162.403	0/1:6:1,5:1:36:5:176:-7.77415,0,-1.79209	0/0:233:230,3:230:8214:3:108:0,-60.3324,-729.409	0/1:141:56,85:56:1965:85:3039:-197.093,0,-134.674	0/1:50:25,25:25:888:25:878:-58.2881,0,-65.0557	0/0:77:77,0:77:2725:0:0:0,-23.1793,-245.475	0/1:143:72,71:72:2564:71:2535:-164.635,0,-187.934	0/1:96:16,80:16:576:80:2868:-209.92,0,-23.2761	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.17	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.094	0/1:41:14,27:14:482:27:964:-71.7755,0,-31.291	0/1:7:6,1:6:216:1:36:-1.34728,0,-17.6833	0/0:97:97,0:97:3435:0:0:0,-29.1999,-309.151	0/1:67:33,34:33:1168:34:1224:-80.6028,0,-85.2494	0/1:96:51,45:51:1809:45:1612:-99.4722,0,-134.181	0/0:113:112,1:112:3974:1:36:0,-30.5619,-354.386	0/1:125:69,56:69:2476:56:2012:-80.5795,0,-185.42	0/1:66:31,35:31:1108:35:1260:-83.3873,0,-80.0932	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.6	0/1:123:66,57:66:2355:57:2040:-118.58,0,-175.17	0/1:159:78,81:78:2787:81:2900:-186.168,0,-203.19	0/1:51:25,26:25:878:26:928:-64.5559,0,-63.9787	0/0:77:77,0:77:2714:0:0:0,-23.1793,-244.494	0/1:39:23,16:23:786:16:561:-36.8681,0,-58.9342	0/0:141:141,0:141:4968:0:0:0,-42.4452,-447.263	0/1:21:10,11:10:342:11:384:-26.0018,0,-24.7865	0/1:70:40,30:40:1384:30:1080:-68.3315,0,-103.753	0/0:80:79,1:79:2753:1:36:0,-20.7834,-243.703	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.348	0/1:123:72,51:72:2529:51:1815:-116.994,0,-190.774	0/1:61:14,47:14:496:47:1667:-124.659,0,-26.6072	0/0:99:99,0:99:3507:0:0:0,-29.802,-315.837	0/0:140:137,0:137:4816:0:0:0,-41.2411,-433.242
chr09	3789175	.	G	A	34688.4	PASS	AB=0.50397;ABP=3.66546;AC=61;AF=0.324468;AN=188;AO=2419;CIGAR=1X;DP=7518;DPB=7518;DPRA=1.18741;EPP=4939.34;EPPR=10391.1;GTI=2;LEN=1;MEANALT=1.0303;MQM=36.6474;MQMR=59.6548;NS=94;NUMALT=1;ODDS=1.48099;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86243;QR=179812;RO=5095;RPL=2382;RPP=4939.34;RPPR=10391.1;RPR=37;RUN=1;SAF=2419;SAP=5255.8;SAR=0;SRF=5095;SRP=11066.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:26,11:26:924:11:396:-16.3331,0,-72.315	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.484	0/0:119:119,0:119:4235:0:0:0,-35.8226,-381.226	0/0:205:203,1:203:7228:1:36:0,-58.2883,-647.005	0/1:33:21,12:21:752:12:432:-15.7939,0,-58.0494	0/1:31:22,9:22:788:9:320:-14.6653,0,-61.9038	0/0:83:83,0:83:2967:0:0:0,-24.9855,-267.253	0/1:90:40,50:40:1410:50:1775:-111.035,0,-99.9521	0/1:91:34,57:34:1206:57:2039:-131.873,0,-81.4426	0/1:100:41,59:41:1459:59:2087:-148.016,0,-101.482	0/1:69:44,25:44:1541:25:892:-56.2424,0,-118.204	0/0:99:99,0:99:3426:0:0:0,-29.802,-308.512	0/1:89:42,47:42:1488:47:1680:-110.939,0,-107.423	0/1:86:47,38:47:1676:38:1358:-89.3739,0,-125.18	0/1:67:30,37:30:1029:37:1319:-92.0095,0,-72.746	0/1:61:29,32:29:1003:32:1140:-77.5992,0,-72.2101	0/1:49:19,30:19:676:30:1067:-73.0512,0,-46.4175	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.335	0/1:40:20,20:20:703:20:712:-47.2286,0,-51.5523	0/1:126:69,57:69:2436:57:2031:-127.573,0,-181.474	0/1:120:56,64:56:1971:64:2263:-156.139,0,-141.527	0/1:230:97,133:97:3406:133:4723:-313.723,0,-237.408	0/0:66:66,0:66:2319:0:0:0,-19.868,-208.875	0/1:47:34,13:34:1204:13:454:-24.6905,0,-94.3656	0/0:66:66,0:66:2323:0:0:0,-19.868,-209.291	0/1:164:84,80:84:2987:80:2867:-188.428,0,-219.668	0/0:165:165,0:165:5805:0:0:0,-49.6699,-522.532	0/1:33:17,16:17:592:16:564:-37.9281,0,-43.6152	0/1:272:135,137:135:4814:137:4894:-334.831,0,-351.515	0/1:112:63,49:63:2216:49:1732:-109.355,0,-165.978	0/1:131:45,86:45:1595:86:3078:-216.287,0,-104.402	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:20:8,12:8:288:12:424:-27.0608,0,-20.2468	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7822	0/1:9:8,1:8:271:1:36:-0.589755,0,-22.0102	0/0:12:12,0:12:404:0:0:0,-3.61236,-36.6797	0/1:180:98,82:98:3410:82:2924:-200.87,0,-252.929	0/1:85:40,45:40:1402:45:1609:-90.1547,0,-100.885	0/1:54:35,19:35:1203:19:684:-38.812,0,-92.3102	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:108:50,58:50:1768:58:2080:-140.238,0,-126.892	0/1:58:33,25:33:1148:25:865:-56.3238,0,-86.1634	0/1:126:77,49:77:2739:49:1760:-82.0276,0,-208.821	0/1:50:25,25:25:872:25:896:-60.7495,0,-63.7284	0/1:50:25,25:25:870:25:892:-61.9232,0,-63.5607	0/0:89:88,1:88:3118:1:36:0,-23.289,-277.235	0/0:118:118,0:118:4194:0:0:0,-35.5215,-377.612	0/0:116:115,1:115:4035:1:36:0,-31.465,-359.877	0/1:79:51,28:51:1802:28:1004:-57.7892,0,-138.659	0/1:76:35,41:35:1252:41:1445:-101.013,0,-90.1032	0/0:53:53,0:53:1877:0:0:0,-15.9546,-169.206	0/1:5:1,4:1:36:4:144:-11.1327,0,-2.09312	0/0:99:99,0:99:3508:0:0:0,-29.802,-315.931	0/0:62:62,0:62:2193:0:0:0,-18.6639,-197.586	0/1:18:3,15:3:108:15:540:-39.4482,0,-4.65663	0/1:107:56,51:56:1967:51:1815:-118.683,0,-145.071	0/1:34:15,19:15:517:19:684:-41.9783,0,-36.6196	0/1:11:7,4:7:248:4:140:-9.33039,0,-19.3529	0/1:7:5,2:5:180:2:72:-4.54792,0,-14.4365	0/1:64:30,34:30:1072:34:1220:-79.9971,0,-77.5265	0/1:102:59,43:59:2083:43:1531:-100.518,0,-156.862	0/1:6:1,5:1:36:5:180:-7.79211,0,-1.79209	0/0:232:229,3:229:8078:3:108:0,-60.0314,-716.858	0/1:135:52,83:52:1847:83:2952:-191.604,0,-125.866	0/1:48:24,24:24:833:24:860:-56.424,0,-60.8306	0/0:79:79,0:79:2816:0:0:0,-23.7814,-253.66	0/1:141:72,69:72:2527:69:2457:-158.511,0,-185.203	0/1:94:20,74:20:703:74:2638:-190.848,0,-35.2793	0/0:42:42,0:42:1478:0:0:0,-12.6433,-133.308	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.719	0/1:40:14,26:14:491:26:907:-67.2533,0,-32.4071	0/1:8:7,1:7:252:1:36:-1.04625,0,-20.6207	0/0:97:97,0:97:3445:0:0:0,-29.1999,-310.051	0/1:66:32,34:32:1130:34:1215:-80.3166,0,-82.1308	0/1:98:53,45:53:1874:45:1604:-98.1574,0,-139.422	0/0:111:110,1:110:3838:1:36:0,-29.9598,-342.151	0/1:120:66,54:66:2364:54:1944:-76.1995,0,-176.866	0/1:64:30,34:30:1060:34:1205:-79.958,0,-76.3756	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:79:79,0:79:2763:0:0:0,-23.7814,-248.826	0/1:125:67,58:67:2362:58:2084:-120.802,0,-175.198	0/1:160:79,81:79:2790:81:2895:-184.924,0,-203.166	0/1:52:25,27:25:860:27:964:-67.2106,0,-62.0534	0/0:78:78,0:78:2747:0:0:0,-23.4803,-247.463	0/1:37:21,16:21:727:16:576:-38.7026,0,-54.6104	0/0:138:138,0:138:4853:0:0:0,-41.5421,-436.922	0/1:20:9,11:9:320:11:392:-26.7474,0,-23.1218	0/1:69:39,30:39:1379:30:1072:-68.1908,0,-103.611	0/0:82:80,0:80:2796:0:0:0,-24.0824,-251.465	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.729	0/1:122:72,50:72:2508:50:1786:-114.7,0,-187.818	0/1:60:14,46:14:500:46:1636:-122.307,0,-27.2702	0/0:97:97,0:97:3438:0:0:0,-29.1999,-309.632	0/0:133:133,0:133:4705:0:0:0,-40.037,-423.602
chr09	3789223	.	GCCC	GCCT,TCCT	228580	PASS	AB=0.48329,0.511711;ABP=19.9913,11.3513;AC=127,61;AF=0.675532,0.324468;AN=188;AO=7286,3595;CIGAR=3M1X,1X2M1X;DP=10943;DPB=10943;DPRA=0,1.05219;EPP=15824.4,7809.45;EPPR=31.2394;GTI=0;LEN=1,4;MEANALT=2.18085,2.40845;MQM=59.6635,52.3419;MQMR=60;NS=94;NUMALT=2;ODDS=5.80005;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=261048,127502;QR=460;RO=13;RPL=0,0;RPP=15824.4,7809.45;RPPR=31.2394;RPR=7286,3595;RUN=1,1;SAF=0,0;SAP=15824.4,7809.45;SAR=7286,3595;SRF=0;SRP=31.2394;SRR=13;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:45:0,24,21:0:0:24,21:864,749:-131.629,-61.1283,-53.9036,-70.8578,0,-64.5362	1/1:106:0,106,0:0:0:106,0:3792,0:-341.391,-31.9092,0,-341.391,-31.9092,-341.391	1/1:206:0,205,0:0:0:205,0:7355,0:-661.511,-61.7112,0,-661.511,-61.7112,-661.511	1/1:247:0,244,0:0:0:244,0:8753,0:-786.512,-73.4513,0,-786.512,-73.4513,-786.512	1/2:67:0,32,35:0:0:32,35:1148,1237:-194.448,-100.816,-91.1826,-93.9877,0,-83.4516	1/2:70:0,36,34:0:0:36,34:1292,1212:-204.254,-98.8645,-88.0274,-105.747,0,-95.5117	1/1:109:0,109,0:0:0:109,0:3916,0:-352.613,-32.8123,0,-352.613,-32.8123,-352.613	1/2:214:0,104,108:0:0:104,108:3732,3844:-615.789,-311.422,-280.115,-304.412,0,-271.901	1/2:126:0,55,70:0:0:55,70:1976,2468:-361.462,-200.264,-183.708,-161.214,0,-140.142	1/2:114:0,50,64:0:0:50,64:1781,2269:-329.757,-184.604,-169.553,-145.507,0,-126.241	1/2:63:0,29,33:0:0:29,33:1044,1164:-179.862,-94.6713,-85.9414,-85.3106,0,-75.3767	1/1:103:0,102,1:0:0:102,1:3620,35:-325.646,-30.7051,0,-322.804,-27.5147,-322.503	1/2:72:0,35,37:0:0:35,37:1260,1299:-208.409,-105.62,-95.0838,-103.144,0,-92.0061	1/2:102:0,58,44:0:0:58,44:2088,1564:-297.544,-127.171,-109.711,-170.73,0,-157.485	1/2:53:0,24,29:0:0:24,29:864,1041:-155.321,-84.8222,-77.5975,-70.8578,0,-62.128	1/2:77:0,42,35:0:0:42,35:1500,1247:-223.944,-101.65,-89.0067,-122.65,0,-112.114	1/2:43:0,23,20:0:0:23,20:828,703:-124.783,-57.2194,-50.2957,-67.9181,0,-61.8975	1/1:36:0,36,0:0:0:36,0:1288,0:-116.224,-10.8371,0,-116.224,-10.8371,-116.224	1/2:17:0,11,6:0:0:11,6:396,216:-49.305,-16.9899,-13.6786,-32.6632,0,-30.857	1/2:198:0,107,90:0:0:107,90:3824,3184:-570.353,-258.585,-226.375,-311.764,0,-284.671	1/2:187:0,103,84:0:0:103,84:3685,2962:-541.29,-240.948,-209.942,-300.696,0,-275.409	1/2:87:0,21,65:0:0:21,65:756,2307:-248.995,-187.324,-181.002,-61.6703,0,-42.1033	1/1:213:1,211,0:1:36:211,0:7568,0:-677.463,-60.5399,0,-677.764,-63.5173,-680.702	1/2:56:0,31,25:0:0:31,25:1112,899:-164.149,-73.4654,-64.1335,-91.042,0,-83.5163	1/1:88:0,86,1:0:0:86,1:3088,29:-277.817,-25.8886,0,-275.51,-23.6156,-275.209	1/2:345:1,158,184:1:36:158,184:5635,6478:-981.297,-522.417,-477.792,-456.243,0,-403.791	1/1:212:1,211,0:1:30:211,0:7580,0:-679.063,-60.8188,0,-679.364,-63.5173,-681.763	1/2:33:0,22,11:0:0:22,11:784,391:-96.0772,-32.1722,-25.5495,-64.2603,0,-60.949	1/2:369:0,174,195:0:0:174,195:6252,6943:-1072.6,-563.44,-511.061,-509.518,0,-450.817	1/2:200:0,112,86:0:0:112,86:4008,3044:-573.41,-246.577,-212.861,-326.828,0,-300.939	1/2:440:0,218,220:0:0:218,220:7786,7784:-1265.17,-630.429,-564.804,-634.736,0,-568.509	1/1:23:0,22,0:0:0:22,0:792,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/2:19:0,13,6:0:0:13,6:464,216:-55.7819,-17.9563,-14.0429,-38.1841,0,-36.3779	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/2:16:0,8,8:0:0:8,8:288,280:-46.5331,-23.028,-20.6198,-23.8592,0,-21.4509	1/1:18:0,18,0:0:0:18,0:646,0:-58.4498,-5.41854,0,-58.4498,-5.41854,-58.4498	1/2:155:0,82,73:0:0:82,73:2944,2604:-451.864,-211.783,-187.099,-240.438,0,-218.463	1/2:166:0,83,82:0:0:83,82:2975,2925:-480.305,-237.704,-212.719,-242.619,0,-217.934	1/2:41:0,24,17:0:0:24,17:864,609:-120.026,-49.5251,-42.3004,-70.8578,0,-65.7403	1/1:14:0,13,1:0:0:13,1:464,35:-41.7429,-3.91339,0,-38.8993,-0.719852,-38.5983	1/2:189:1,88,100:1:36:88,100:3152,3548:-541.876,-285.187,-261.633,-254.049,0,-226.884	1/2:25:0,16,9:0:0:16,9:576,322:-73.5662,-26.5751,-21.7586,-47.3493,0,-44.64	1/2:150:0,73,75:0:0:73,75:2627,2684:-432.831,-218.497,-196.521,-214.334,0,-191.757	1/2:52:0,33,19:0:0:33,19:1188,677:-152.213,-55.2747,-45.3407,-97.2946,0,-91.575	1/2:59:1,25,33:1:36:25,33:900,1186:-166.268,-93.189,-88.6007,-70.4418,0,-63.4453	1/1:91:0,90,1:0:0:90,1:3232,36:-290.705,-27.0927,0,-287.776,-23.8045,-287.475	1/1:167:0,165,2:0:0:165,2:5906,72:-531.12,-49.67,0,-525.261,-43.4525,-524.659	1/1:192:0,189,1:0:0:189,1:6769,36:-608.844,-56.8947,0,-605.913,-53.9634,-605.612	1/2:127:0,56,71:0:0:56,71:2016,2523:-369.814,-205.333,-188.475,-164.838,0,-143.465	1/2:188:0,98,90:0:0:98,90:3497,3208:-546.298,-261.273,-231.772,-285.382,0,-258.289	1/1:188:0,187,0:0:0:187,0:6650,0:-597.654,-56.2926,0,-597.654,-56.2926,-597.654	1/2:20:0,10,10:0:0:10,10:360,336:-56.8912,-27.511,-24.5007,-29.7278,0,-26.7175	1/1:162:0,161,1:0:0:161,1:5767,35:-518.774,-48.4658,0,-515.933,-45.2754,-515.632	1/1:127:0,127,0:0:0:127,0:4558,0:-410.366,-38.2308,0,-410.366,-38.2308,-410.366	1/2:25:0,13,12:0:0:13,12:468,424:-72.6252,-34.641,-30.7276,-38.3386,0,-34.7262	1/2:208:0,84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chr09	4031812	.	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chr09	4047584	.	TTTTA	ATTTA	45371.7	PASS	AB=0.477405;ABP=28.2299;AC=61;AF=0.327957;AN=186;AO=2718;CIGAR=1X4M;DP=8268;DPB=8268.8;DPRA=1.21393;EPP=5905.07;EPPR=12013.4;GTI=1;LEN=1;MEANALT=1.21667;MQM=59.9864;MQMR=59.9967;NS=93;NUMALT=1;ODDS=3.25197;PAIRED=0;PAIREDR=0;PAO=1;PQA=36;PQR=36;PRO=1;QA=97473;QR=194744;RO=5531;RPL=2718;RPP=5905.07;RPPR=12013.4;RPR=0;RUN=1;SAF=2718;SAP=5905.07;SAR=0;SRF=5531;SRP=12013.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:8,5:8:277:5:180:-12.6387,0,-21.352	0/0:211:209,0:209:7370:0:0:0,-62.9153,-663.001	0/0:84:84,0:84:2952:0:0:0,-25.2865,-265.913	0/0:134:134,0:134:4750:0:0:0,-40.338,-427.66	0/1:39:22,17:22:777:17:612:-43.6733,0,-58.5112	0/1:31:14,17:14:484:17:612:-46.0815,0,-34.5557	0/0:101:101,0:101:3556:0:0:0,-30.404,-320.251	0/1:153:79,74:79:2775:74:2664:-193.947,0,-203.936	0/1:61:37,24:37:1304:24:860:-59.359,0,-99.2977	0/1:134:82,52:82:2867:52:1860:-127.342,0,-217.931	0/1:33:13,20:13:466:20:716:-54.8337,0,-32.3447	0/0:73:73,0:73:2542:0:0:0,-21.9752,-229.03	0/1:77:34,43:34:1210:43:1548:-116.434,0,-86.0268	0/1:63:33,30:33:1172:30:1080:-78.5484,0,-86.8226	0/1:76:35,40:35:1236:40:1432:-106.241,0,-88.6076	0/1:56:30,26:30:1040:26:936:-67.7018,0,-77.0505	0/1:73:35,38:35:1234:38:1368:-101.446,0,-89.3879	0/0:68:68,0:68:2403:0:0:0,-20.47,-216.526	0/1:35:16,18:16:567:18:644:-47.6959,0,-40.7669	0/1:165:93,72:93:3276:72:2592:-183.858,0,-245.394	0/1:137:70,67:70:2470:67:2408:-175.735,0,-181.312	0/1:97:41,56:41:1437:56:2012:-152.153,0,-100.424	0/0:35:35,0:35:1209:0:0:0,-10.536,-109.11	0/1:110:56,54:56:1971:54:1914:-139.423,0,-144.551	0/0:52:52,0:52:1812:0:0:0,-15.6536,-163.358	0/1:285:144,141:144:5056:141:5055:-369.301,0,-369.398	0/0:181:181,0:181:6377:0:0:0,-54.4864,-574.028	0/1:48:28,20:28:1002:20:720:-50.6793,0,-76.0465	0/1:217:104,113:104:3677:113:4048:-299.184,0,-265.811	0/1:213:127,85:127:4467:85:3047:-210.389,0,-338.136	0/1:105:66,39:66:2305:39:1383:-93.1599,0,-176.104	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	.:.:.:.:.:.:.:.	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:228:108,118:108:3769:118:4235:-312.935,0,-271.022	0/1:205:127,77:127:4493:77:2768:-187.67,0,-342.849	0/1:87:37,50:37:1273:50:1796:-135.733,0,-88.6762	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:120:59,61:59:2083:61:2192:-161.422,0,-151.617	0/1:39:21,18:21:731:18:632:-45.4666,0,-54.3715	0/1:112:53,59:53:1873:59:2101:-155.642,0,-135.133	0/1:71:40,31:40:1413:31:1112:-78.6001,0,-105.676	0/1:82:52,30:52:1834:30:1080:-72.8288,0,-140.655	0/0:72:72,0:72:2511:0:0:0,-21.6742,-226.243	0/0:74:74,0:74:2626:0:0:0,-22.2762,-236.589	0/0:118:118,0:118:4168:0:0:0,-35.5215,-375.307	0/1:133:77,56:77:2719:56:2016:-141.676,0,-204.917	0/1:172:91,81:91:3212:81:2912:-210.537,0,-237.528	0/0:24:24,0:24:820:0:0:0,-7.22472,-74.1113	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:91:90,0:90:3164:0:0:0,-27.0927,-284.626	0/0:45:45,0:45:1582:0:0:0,-13.5463,-142.67	0/1:13:7,3:7:249:3:108:-6.71502,0,-19.4006	0/1:104:59,45:59:2095:45:1593:-112.292,0,-157.454	0/1:24:14,10:14:474:10:356:-25.1565,0,-35.7565	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:20:9,11:9:305:11:396:-29.9621,0,-21.758	0/1:44:25,19:25:896:19:680:-48.2838,0,-67.7152	0/1:117:65,52:65:2294:52:1864:-132.819,0,-171.501	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:224:224,0:224:7924:0:0:0,-67.4307,-713.195	0/1:240:131,108:131:4608:108:3872:-276.366,0,-342.584	0/1:92:54,38:54:1920:38:1368:-95.7261,0,-145.382	0/0:51:51,0:51:1798:0:0:0,-15.3525,-162.101	0/1:194:105,89:105:3665:89:3200:-229.822,0,-271.66	0/1:78:24,53:24:847:53:1895:-147.364,0,-53.0867	0/0:21:21,0:21:728:0:0:0,-6.32163,-65.8391	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.163	0/1:86:39,47:39:1378:47:1678:-125.418,0,-98.4297	0/1:35:23,12:23:796:12:424:-27.9604,0,-61.4195	0/0:76:76,0:76:2670:0:0:0,-22.8783,-240.546	0/1:63:42,21:42:1472:21:756:-49.4023,0,-113.808	0/1:98:55,43:55:1903:43:1548:-110.112,0,-142.044	0/0:123:123,0:123:4361:0:0:0,-37.0267,-392.667	0/1:62:35,27:35:1247:27:972:-69.134,0,-93.8707	0/1:127:56,71:56:1963:71:2556:-192.059,0,-138.712	0/0:13:13,0:13:461:0:0:0,-3.91339,-41.826	0/0:96:96,0:96:3433:0:0:0,-28.8989,-309.183	0/1:76:29,47:29:1023:47:1688:-129.327,0,-69.5031	0/1:183:89,91:89:3106:91:3264:-239.435,0,-225.225	0/1:127:67,60:67:2352:60:2160:-156.436,0,-173.708	0/0:61:61,0:61:2143:0:0:0,-18.3628,-193.138	0/1:111:54,57:54:1900:57:2048:-151.177,0,-137.862	0/0:192:192,0:192:6744:0:0:0,-57.7978,-607.046	0/1:45:25,19:25:880:19:680:-47.9241,0,-65.9124	0/1:86:37,48:37:1305:48:1720:-129.197,0,-91.8624	0/0:61:61,0:61:2137:0:0:0,-18.3628,-192.598	0/0:35:35,0:35:1227:0:0:0,-10.536,-110.732	0/1:96:44,52:44:1554:52:1856:-138.392,0,-111.252	0/1:75:26,49:26:931:49:1752:-135.387,0,-61.5318	0/0:73:73,0:73:2564:0:0:0,-21.9752,-231.008	0/0:120:120,0:120:4266:0:0:0,-36.1236,-384.121
chr09	4047597	.	C	T	107252	PASS	AB=0.520187;ABP=22.7359;AC=124;AF=0.666667;AN=186;AO=5438;CIGAR=1X;DP=8120;DPB=8120;DPRA=29.7216;EPP=11811.5;EPPR=5816.04;GTI=1;LEN=1;MEANALT=1.04396;MQM=59.9976;MQMR=59.9895;NS=93;NUMALT=1;ODDS=0.82434;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193313;QR=93575;RO=2677;RPL=5438;RPP=11811.5;RPPR=5816.04;RPR=0;RUN=1;SAF=5438;SAP=11811.5;SAR=0;SRF=2677;SRP=5816.04;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:5,8:5:172:8:284:-21.99,0,-11.9046	1/1:207:0,207:0:0:207:7353:-661.821,-62.3132,0	1/1:81:0,81:0:0:81:2866:-258.178,-24.3834,0	1/1:131:0,131:0:0:131:4628:-416.683,-39.4349,0	0/1:38:16,22:16:567:22:772:-58.3602,0,-39.9216	0/1:31:17,14:17:585:14:487:-34.8273,0,-43.64	1/1:101:0,101:0:0:101:3599:-324.117,-30.404,0	0/1:149:72,77:72:2563:77:2737:-201.717,0,-186.067	0/1:60:24,36:24:840:36:1296:-98.8821,0,-57.8536	0/1:132:51,80:51:1802:80:2860:-217.843,0,-122.666	0/1:32:19,13:19:668:13:464:-32.4645,0,-50.8127	1/1:72:0,72:0:0:72:2554:-230.108,-21.6742,0	0/1:75:43,32:43:1476:32:1148:-81.0526,0,-110.55	0/1:63:31,32:31:1080:32:1142:-84.1242,0,-78.5409	0/1:73:38,35:38:1337:35:1252:-91.0099,0,-98.6527	0/1:57:27,30:27:950:30:1080:-80.3545,0,-68.6547	0/1:71:38,33:38:1348:33:1167:-83.9633,0,-100.247	1/1:66:0,66:0:0:66:2349:-211.668,-19.868,0	0/1:35:18,17:18:629:17:604:-44.1546,0,-46.3977	0/1:161:70,90:70:2422:90:3217:-241.226,0,-169.709	0/1:136:67,69:67:2355:69:2464:-181.074,0,-171.267	0/1:95:55,39:55:1946:39:1361:-94.1281,0,-146.758	1/1:34:0,34:0:0:34:1170:-105.601,-10.235,0	0/1:109:52,57:52:1825:57:2019:-149.17,0,-131.717	1/1:51:0,51:0:0:51:1810:-163.18,-15.3525,0	0/1:278:135,142:135:4710:142:5052:-371.082,0,-340.319	1/1:181:1,180:1:36:180:6424:-574.649,-50.8882,0	0/1:48:20,28:20:712:28:982:-74.2422,0,-49.9572	0/1:213:111,102:111:3853:102:3635:-263.236,0,-282.846	0/1:207:84,123:84:2881:123:4386:-332.601,0,-197.21	0/1:102:36,66:36:1242:66:2339:-180.064,0,-81.3723	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	.:.:.:.:.:.:.:.	0/0:4:3,0:3:108:0:0:0,-0.90309,-9.71534	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:227:119,108:119:4156:108:3852:-278.542,0,-305.895	0/1:202:78,124:78:2740:124:4413:-336.508,0,-186.028	0/1:85:48,37:48:1636:37:1311:-92.7033,0,-121.934	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:118:59,59:59:2058:59:2112:-154.827,0,-149.967	0/1:37:18,19:18:597:19:661:-48.6735,0,-42.9052	0/1:110:57,53:57:2009:53:1883:-136.635,0,-147.968	0/1:71:32,39:32:1121:39:1392:-104.206,0,-79.8226	0/1:81:29,52:29:1014:52:1835:-141.046,0,-67.184	1/1:71:0,71:0:0:71:2513:-226.421,-21.3731,0	1/1:73:0,73:0:0:73:2590:-233.349,-21.9752,0	1/1:115:0,115:0:0:115:4101:-369.276,-34.6185,0	0/1:131:54,77:54:1889:77:2756:-208.847,0,-130.849	0/1:168:79,89:79:2806:89:3164:-234.411,0,-202.207	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/1:103:43,60:43:1522:60:2122:-160.242,0,-106.266	0/1:23:11,12:11:374:12:432:-32.2975,0,-27.0627	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:20:11,9:11:396:9:289:-20.3024,0,-29.9621	0/1:44:19,25:19:626:25:900:-68.0757,0,-43.4013	0/1:115:51,64:51:1780:64:2242:-167.423,0,-125.859	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:221:0,221:0:0:221:7887:-709.857,-66.5276,0	0/1:232:104,128:104:3643:128:4552:-340.008,0,-258.24	0/1:89:36,53:36:1283:53:1896:-144.126,0,-88.981	1/1:52:0,52:0:0:52:1813:-163.448,-15.6536,0	0/1:189:89,100:89:3123:100:3559:-263.625,0,-224.401	0/1:74:51,23:51:1785:23:828:-52.5679,0,-138.654	1/1:20:0,20:0:0:20:708:-64.045,-6.0206,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:86:47,39:47:1636:39:1360:-96.807,0,-121.636	0/1:34:11,23:11:396:23:824:-64.2483,0,-25.7477	1/1:73:0,73:0:0:73:2566:-231.189,-21.9752,0	0/1:60:21,39:21:732:39:1339:-102.74,0,-48.1369	0/1:99:44,55:44:1521:55:1943:-145.344,0,-107.375	1/1:121:0,121:0:0:121:4335:-390.325,-36.4246,0	0/1:61:26,35:26:900:35:1244:-93.9018,0,-62.9485	0/1:125:70,55:70:2476:55:1963:-139.316,0,-185.464	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:97:0,97:0:0:97:3471:-312.601,-29.1999,0	0/1:75:46,29:46:1640:29:1040:-71.3371,0,-125.308	0/1:175:91,84:91:3174:84:2981:-215.842,0,-233.201	0/1:125:61,64:61:2124:64:2279:-167.743,0,-153.796	1/1:62:0,62:0:0:62:2215:-199.614,-18.6639,0	0/1:109:57,52:57:1957:52:1849:-133.876,0,-143.59	1/1:188:1,187:1:36:187:6616:-591.925,-52.9954,0	0/1:44:19,25:19:661:25:890:-67.1738,0,-46.5663	0/1:85:48,37:48:1703:37:1302:-91.8923,0,-127.968	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:34:0,34:0:0:34:1207:-108.935,-10.235,0	0/1:96:53,43:53:1796:43:1540:-109.994,0,-132.946	0/1:75:48,27:48:1690:27:968:-64.8601,0,-129.808	1/1:72:0,72:0:0:72:2561:-230.739,-21.6742,0	1/1:120:0,120:0:0:120:4272:-384.658,-36.1236,0
chr09	4178091	.	C	T	82856.8	PASS	AB=0.494325;ABP=4.16866;AC=127;AF=0.675532;AN=188;AO=4181;CIGAR=1X;DP=6284;DPB=6284;DPRA=0;EPP=9081.94;EPPR=4412.44;GTI=0;LEN=1;MEANALT=1.01064;MQM=53.653;MQMR=40.657;NS=94;NUMALT=1;ODDS=2.43905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149616;QR=75209;RO=2102;RPL=0;RPP=9081.94;RPPR=4412.44;RPR=4181;RUN=1;SAF=0;SAP=9081.94;SAR=4181;SRF=0;SRP=4567.45;SRR=2102;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:11,17:11:396:17:604:-46.1323,0,-25.2654	1/1:74:0,74:0:0:74:2652:-237.503,-22.2762,0	1/1:103:0,103:0:0:103:3679:-328.835,-31.0061,0	1/1:130:0,130:0:0:130:4672:-419.555,-39.1339,0	0/1:55:26,29:26:936:29:1040:-76.8509,0,-64.5725	0/1:42:16,26:16:576:26:917:-69.979,0,-36.5876	1/1:122:0,122:0:0:122:4376:-393.271,-36.7257,0	0/1:66:27,39:27:968:39:1400:-104.357,0,-62.7224	0/1:84:48,36:48:1709:36:1278:-89.1063,0,-118.395	0/1:50:27,23:27:964:23:828:-59.6546,0,-69.7722	0/1:17:7,10:7:252:10:360:-27.6032,0,-16.7513	1/1:48:1,47:1:36:47:1668:-145.997,-11.0618,0	0/1:54:21,33:21:752:33:1169:-88.4218,0,-46.7821	0/1:24:13,11:13:468:11:395:-28.346,0,-33.296	0/1:43:18,25:18:644:25:896:-67.7708,0,-43.5528	0/1:38:14,24:14:500:24:864:-66.0457,0,-32.0834	0/1:28:13,15:13:456:15:536:-39.9922,0,-29.2406	1/1:36:0,36:0:0:36:1276:-114.375,-10.8371,0	0/1:26:13,13:13:468:13:468:-33.4002,0,-31.8446	0/1:211:107,104:107:3823:104:3744:-272.239,0,-269.614	0/1:95:42,53:42:1492:53:1896:-141.741,0,-99.9712	0/1:113:76,37:76:2728:37:1324:-85.3083,0,-202.787	1/1:61:1,60:1:36:60:2156:-190.189,-14.7672,0	0/1:108:61,47:61:2181:47:1688:-118.978,0,-154.828	1/1:49:0,49:0:0:49:1745:-156.984,-14.7505,0	0/1:220:133,87:133:4780:87:3092:-210.986,0,-351.075	1/1:144:0,144:0:0:144:5142:-459.611,-43.3483,0	0/1:14:9,5:9:320:5:180:-12.3142,0,-23.7919	0/1:227:107,119:107:3827:119:4272:-314.68,0,-268.321	0/1:73:42,31:42:1490:31:1116:-78.1751,0,-105.219	0/1:75:41,34:41:1468:34:1209:-85.8151,0,-105.024	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	0/1:4:2,2:2:72:2:72:-5.35941,0,-5.35941	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.03479	1/1:3:0,3:0:0:3:108:-9.08802,-0.90309,0	0/1:110:53,57:53:1900:57:2044:-149.785,0,-133.111	0/1:164:86,78:86:3068:78:2792:-201.344,0,-212.985	0/1:37:17,20:17:612:20:716:-53.4555,0,-40.6107	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:97:41,56:41:1472:56:2007:-151.076,0,-98.0679	0/1:33:16,17:16:572:17:612:-44.5427,0,-39.8373	0/1:113:41,72:41:1476:72:2575:-196.835,0,-92.8302	0/1:46:21,25:21:756:25:900:-67.399,0,-52.1611	0/1:50:24,26:24:860:26:927:-68.6288,0,-60.0599	1/1:79:0,79:0:0:79:2840:-253.957,-23.7814,0	1/1:89:0,89:0:0:89:3167:-282.506,-26.7917,0	1/1:136:1,135:1:36:135:4828:-429.622,-37.3418,0	0/1:81:33,48:33:1175:48:1716:-129.965,0,-78.6647	0/1:102:39,63:39:1404:63:2264:-172.934,0,-91.5062	1/1:152:0,152:0:0:152:5400:-484.738,-45.7566,0	0/1:3:1,2:1:36:2:72:-5.9287,0,-2.59961	1/1:86:2,84:2:72:84:3020:-264.856,-19.4521,0	1/1:11:0,11:0:0:11:396:-35.3413,-3.31133,0	1/1:4:0,4:0:0:4:144:-13.2744,-1.20412,0	0/1:92:44,48:44:1565:48:1705:-125.599,0,-106.668	0/1:30:16,14:16:576:14:504:-35.7751,0,-40.8084	0/1:2:1,1:1:36:1:36:-2.99521,0,-2.93406	0/1:16:7,9:7:228:9:324:-24.6367,0,-15.7274	0/1:60:34,26:34:1224:26:936:-65.6884,0,-85.3984	0/1:59:33,26:33:1188:26:932:-66.1007,0,-84.4091	0/1:4:2,2:2:72:2:72:-5.62767,0,-5.45101	0/1:137:60,77:60:2152:77:2760:-207.082,0,-148.884	0/1:97:36,61:36:1292:61:2169:-165.44,0,-83.7041	0/1:41:21,20:21:756:20:720:-52.0658,0,-52.8102	1/1:48:0,48:0:0:48:1724:-153.909,-14.4494,0	0/1:107:62,45:62:2212:45:1601:-111.512,0,-161.256	0/1:94:70,24:70:2481:24:860:-48.9783,0,-186.101	1/1:11:0,11:0:0:11:396:-34.3961,-3.31133,0	1/1:80:0,80:0:0:80:2864:-256.551,-24.0824,0	0/1:89:46,43:46:1656:43:1535:-111.327,0,-118.159	0/1:8:3,5:3:104:5:180:-14.1319,0,-6.05939	1/1:68:0,68:0:0:68:2424:-216.748,-20.47,0	0/1:50:26,24:26:932:24:864:-60.4837,0,-62.8879	0/1:77:32,45:32:1136:45:1601:-120.046,0,-75.6353	1/1:119:2,117:2:72:117:4185:-369.305,-28.9858,0	0/1:33:20,13:20:720:13:468:-32.356,0,-51.3816	0/1:46:32,14:32:1148:14:504:-31.5326,0,-83.0049	1/1:11:0,11:0:0:11:388:-34.6907,-3.31133,0	1/1:89:2,87:2:72:87:3112:-272.799,-20.2281,0	0/1:82:45,37:45:1612:37:1328:-94.1325,0,-109.717	0/1:174:77,97:77:2753:97:3469:-258.661,0,-187.148	0/1:78:34,44:34:1220:44:1580:-118.728,0,-82.2326	1/1:39:0,39:0:0:39:1400:-126.076,-11.7402,0	0/1:54:36,18:36:1288:18:648:-42.3425,0,-93.5805	1/1:98:0,98:0:0:98:3520:-316.512,-29.5009,0	0/1:32:18,14:18:644:14:504:-35.3918,0,-45.1852	0/1:50:21,29:21:741:29:1040:-77.8867,0,-47.8678	1/1:56:0,56:0:0:56:2012:-179.23,-16.8577,0	1/1:24:0,24:0:0:24:860:-77.4706,-7.22472,0	0/1:52:36,16:36:1292:16:568:-35.6645,0,-95.2224	0/1:42:32,10:32:1148:10:360:-20.0774,0,-87.0055	1/1:109:0,109:0:0:109:3893:-349.548,-32.8123,0	1/1:58:0,58:0:0:58:2076:-185.634,-17.4597,0
chr09	4178101	.	A	T	81754.4	PASS	AB=0.489018;ABP=7.35062;AC=127;AF=0.675532;AN=188;AO=4144;CIGAR=1X;DP=6270;DPB=6270;DPRA=0;EPP=9001.59;EPPR=4445.31;GTI=0;LEN=1;MEANALT=1.01064;MQM=53.666;MQMR=40.6254;NS=94;NUMALT=1;ODDS=1.77257;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148066;QR=76137;RO=2125;RPL=0;RPP=9001.59;RPPR=4445.31;RPR=4144;RUN=1;SAF=0;SAP=9001.59;SAR=4144;SRF=0;SRP=4617.39;SRR=2125;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:11,18:11:381:18:644:-49.4182,0,-23.786	1/1:75:0,75:0:0:75:2669:-239.019,-22.5773,0	1/1:104:0,104:0:0:104:3718:-332.157,-31.3071,0	1/1:125:0,125:0:0:125:4476:-401.538,-37.6288,0	0/1:54:26,28:26:932:28:1000:-73.5603,0,-64.5858	0/1:40:16,24:16:576:24:860:-65.4634,0,-37.1896	1/1:122:0,122:0:0:122:4364:-392.177,-36.7257,0	0/1:66:28,38:28:1008:38:1341:-100.014,0,-65.2797	0/1:83:48,35:48:1719:35:1256:-87.3751,0,-119.472	0/1:51:27,24:27:972:24:852:-61.5117,0,-70.0698	0/1:17:7,10:7:252:10:356:-27.2415,0,-16.7513	1/1:47:1,46:1:36:46:1656:-144.507,-10.7608,0	0/1:55:22,33:22:792:33:1188:-89.8159,0,-49.7078	0/1:26:15,11:15:536:11:396:-27.811,0,-38.6237	0/1:44:19,25:19:684:25:892:-67.1105,0,-46.7159	0/1:38:14,24:14:504:24:860:-65.6877,0,-32.3722	0/1:30:15,15:15:540:15:536:-39.3868,0,-35.4367	1/1:36:0,36:0:0:36:1273:-114.106,-10.8371,0	0/1:26:13,13:13:468:13:468:-33.4002,0,-31.8446	0/1:211:109,102:109:3904:102:3660:-264.681,0,-275.177	0/1:91:40,51:40:1436:51:1824:-136.663,0,-96.1363	0/1:112:75,37:75:2692:37:1328:-85.9697,0,-199.643	1/1:61:1,60:1:36:60:2140:-188.756,-14.7672,0	0/1:109:62,47:62:2216:47:1684:-118.32,0,-157.306	1/1:49:0,49:0:0:49:1745:-156.864,-14.7505,0	0/1:225:137,88:137:4924:88:3128:-212.306,0,-362.114	1/1:145:0,145:0:0:145:5189:-464.182,-43.6494,0	0/1:14:9,5:9:324:5:180:-12.3142,0,-24.0515	0/1:226:110,116:110:3937:116:4144:-304.081,0,-278.062	0/1:75:44,31:44:1580:31:1112:-77.2154,0,-112.072	0/1:75:42,33:42:1508:33:1180:-83.094,0,-107.739	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	0/1:5:3,2:3:104:2:72:-5.05838,0,-7.42091	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.03479	1/1:3:0,3:0:0:3:108:-9.08802,-0.90309,0	0/1:113:55,58:55:1968:58:2088:-152.794,0,-138.189	0/1:162:86,76:86:3092:76:2721:-195.576,0,-215.239	0/1:37:17,20:17:608:20:720:-53.7901,0,-40.3526	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:98:43,55:43:1544:55:1976:-147.455,0,-103.487	0/1:34:16,18:16:567:18:629:-45.9401,0,-39.0915	0/1:111:41,70:41:1476:70:2489:-189.542,0,-93.4322	0/1:46:21,25:21:756:25:878:-65.401,0,-52.1611	0/1:49:24,25:24:860:25:900:-66.5038,0,-60.3842	1/1:76:0,76:0:0:76:2716:-243.265,-22.8783,0	1/1:86:0,86:0:0:86:3057:-272.853,-25.8886,0	1/1:137:1,136:1:36:136:4844:-431.247,-37.6428,0	0/1:84:34,50:34:1220:50:1780:-134.863,0,-81.6512	0/1:101:37,64:37:1332:64:2292:-175.124,0,-86.0438	1/1:152:0,152:0:0:152:5429:-487.543,-45.7566,0	0/1:3:1,2:1:36:2:72:-5.9287,0,-2.59961	1/1:85:2,83:2:72:83:2968:-260.207,-19.1511,0	1/1:11:0,11:0:0:11:385:-34.867,-3.31133,0	1/1:4:0,4:0:0:4:144:-13.2744,-1.20412,0	0/1:88:44,44:44:1572:44:1552:-113.162,0,-107.972	0/1:30:16,14:16:576:14:504:-35.7751,0,-40.8084	0/1:2:1,1:1:36:1:36:-2.99521,0,-2.93406	0/1:16:8,8:8:273:8:288:-21.3991,0,-19.6848	0/1:60:34,26:34:1220:26:932:-65.3327,0,-85.1109	0/1:59:33,26:33:1179:26:932:-66.1596,0,-83.672	0/1:4:2,2:2:72:2:72:-5.62767,0,-5.45101	0/1:135:61,74:61:2188:74:2641:-197.035,0,-152.656	0/1:98:37,61:37:1319:61:2188:-167.064,0,-85.7753	0/1:40:21,19:21:756:19:680:-49.3994,0,-53.1112	1/1:47:0,47:0:0:47:1679:-149.92,-14.1484,0	0/1:109:64,45:64:2296:45:1608:-111.568,0,-166.208	0/1:92:67,25:67:2412:25:877:-50.0847,0,-180.231	1/1:11:0,11:0:0:11:385:-34.1901,-3.31133,0	1/1:81:0,81:0:0:81:2910:-260.017,-24.3834,0	0/1:91:48,42:48:1715:42:1492:-106.588,0,-122.31	0/1:8:3,5:3:108:5:180:-14.1319,0,-6.07761	1/1:68:0,68:0:0:68:2420:-216.3,-20.47,0	0/1:50:25,25:25:896:25:896:-63.3706,0,-60.6648	0/1:77:31,46:31:1116:46:1637:-123.219,0,-73.6763	1/1:119:2,117:2:72:117:4170:-367.94,-28.9858,0	0/1:33:20,13:20:716:13:464:-32.0301,0,-51.1238	0/1:45:32,13:32:1144:13:460:-28.0718,0,-83.0486	1/1:10:0,10:0:0:10:360:-32.1754,-3.0103,0	1/1:85:2,83:2:72:83:2945:-257.859,-19.024,0	0/1:82:45,37:45:1620:37:1316:-93.07,0,-110.115	0/1:174:78,96:78:2767:96:3436:-255.72,0,-188.32	0/1:79:35,44:35:1260:44:1584:-118.786,0,-84.9902	1/1:39:0,39:0:0:39:1400:-126.076,-11.7402,0	0/1:54:36,18:36:1283:18:648:-42.3425,0,-93.2932	1/1:95:0,95:0:0:95:3416:-307.173,-28.5979,0	0/1:32:18,14:18:648:14:500:-35.0381,0,-45.3459	0/1:50:21,29:21:747:29:1039:-77.6595,0,-47.7994	1/1:56:0,56:0:0:56:2012:-179.095,-16.8577,0	1/1:24:0,24:0:0:24:864:-77.8286,-7.22472,0	0/1:50:35,15:35:1222:15:536:-33.3913,0,-90.1649	0/1:41:31,10:31:1116:10:360:-20.3785,0,-84.4646	1/1:111:0,111:0:0:111:3968:-356.137,-33.4143,0	1/1:57:0,57:0:0:57:2040:-182.715,-17.1587,0
chr09	4178119	.	G	A	32438.7	PASS	AB=0.507898;ABP=5.23982;AC=61;AF=0.324468;AN=188;AO=2095;CIGAR=1X;DP=6246;DPB=6246;DPRA=1.06093;EPP=4552.24;EPPR=9012.45;GTI=0;LEN=1;MEANALT=1;MQM=40.4449;MQMR=53.7026;NS=94;NUMALT=1;ODDS=2.23487;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74969;QR=148269;RO=4149;RPL=2095;RPP=4552.24;RPPR=9012.45;RPR=0;RUN=1;SAF=0;SAP=4552.24;SAR=2095;SRF=0;SRP=9012.45;SRR=4149;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:18,11:18:640:11:392:-24.7054,0,-49.0618	0/0:73:73,0:73:2624:0:0:0,-21.9752,-234.974	0/0:103:103,0:103:3696:0:0:0,-31.0061,-330.537	0/0:130:130,0:130:4653:0:0:0,-39.1339,-417.42	0/1:54:29,25:29:1027:25:900:-61.6345,0,-76.0566	0/1:42:26,16:26:936:16:572:-36.0342,0,-71.6778	0/0:122:122,0:122:4388:0:0:0,-36.7257,-394.3	0/1:64:37,27:37:1332:27:950:-61.0823,0,-99.784	0/1:84:36,48:36:1292:48:1709:-118.432,0,-90.2041	0/1:51:24,27:24:852:27:960:-69.137,0,-61.5117	0/1:17:10,7:10:360:7:252:-16.7513,0,-27.6032	0/0:48:47,1:47:1692:1:36:0,-11.0618,-147.738	0/1:54:32,22:32:1136:22:784:-49.4935,0,-85.5203	0/1:25:11,14:11:388:14:504:-36.1042,0,-27.5207	0/1:44:25,19:25:896:19:680:-46.4044,0,-67.4698	0/1:38:24,14:24:864:14:496:-31.825,0,-66.0457	0/1:29:15,14:15:532:14:504:-33.44,0,-39.3344	0/0:37:37,0:37:1324:0:0:0,-11.1381,-117.821	0/1:26:13,13:13:460:13:468:-31.8446,0,-32.8831	0/1:211:105,106:105:3745:106:3791:-265.366,0,-272.302	0/1:93:52,41:52:1855:41:1468:-98.326,0,-138.66	0/1:109:37,72:37:1316:72:2584:-190.921,0,-85.8199	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.426	0/1:107:47,60:47:1684:60:2152:-152.384,0,-118.922	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.158	0/1:223:84,139:84:3008:139:4927:-364.05,0,-202.791	0/0:142:142,0:142:5076:0:0:0,-42.7463,-453.842	0/1:14:5,9:5:180:9:324:-24.0515,0,-12.3142	0/1:224:117,107:117:4173:107:3840:-269.827,0,-306.686	0/1:74:32,42:32:1140:42:1504:-105.975,0,-80.2326	0/1:72:32,40:32:1152:40:1440:-103.233,0,-82.1044	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2947	0/1:5:2,3:2:72:3:108:-7.49702,0,-5.05838	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/1:4:1,3:1:36:3:108:-8.03479,0,-2.38511	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.08802	0/1:110:56,54:56:2004:54:1925:-135.849,0,-146.432	0/1:159:74,85:74:2656:85:3051:-212.621,0,-190.656	0/1:37:20,17:20:712:17:608:-40.3526,0,-53.0993	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/1:97:55,42:55:1967:42:1508:-100.679,0,-147.489	0/1:33:17,16:17:604:16:576:-40.0955,0,-44.047	0/1:109:68,41:68:2427:41:1457:-92.5198,0,-185.155	0/1:47:26,21:26:932:21:756:-51.8601,0,-69.8909	0/1:50:26,24:26:932:24:864:-60.371,0,-69.0797	0/0:78:78,0:78:2787:0:0:0,-23.4803,-249.586	0/0:88:88,0:88:3114:0:0:0,-26.4906,-278.399	0/0:136:136,0:136:4859:0:0:0,-40.9401,-436.299	0/1:83:50,33:50:1788:33:1184:-79.0842,0,-135.813	0/1:101:63,38:63:2240:38:1352:-87.3262,0,-171.18	0/0:153:153,0:153:5458:0:0:0,-46.0576,-489.882	0/1:2:1,1:1:36:1:36:-2.90064,0,-2.99362	0/0:82:80,2:80:2876:2:72:0,-18.248,-251.935	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.2367	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2744	0/1:89:47,42:47:1675:42:1493:-100.641,0,-123.933	0/1:30:14,16:14:504:16:572:-40.4966,0,-35.7751	0/1:2:1,1:1:36:1:36:-2.93406,0,-2.99521	0/1:15:8,7:8:284:7:252:-18.1157,0,-21.3811	0/1:57:23,34:23:824:34:1190:-84.528,0,-56.7327	0/1:60:26,34:26:928:34:1224:-87.2607,0,-65.4994	0/1:4:2,2:2:72:2:72:-5.45101,0,-5.62767	0/1:136:76,60:76:2736:60:2143:-148.427,0,-205.223	0/1:97:61,36:61:2180:36:1292:-83.5743,0,-166.648	0/1:40:19,21:19:676:21:756:-53.1112,0,-49.041	0/0:48:48,0:48:1704:0:0:0,-14.4494,-152.293	0/1:108:44,64:44:1541:64:2300:-166.82,0,-106.273	0/1:92:24,68:24:860:68:2429:-181.45,0,-48.5666	0/0:11:11,0:11:384:0:0:0,-3.31133,-33.6425	0/0:80:80,0:80:2852:0:0:0,-24.0824,-255.215	0/1:89:41,48:41:1472:48:1724:-123.733,0,-105.82	0/1:8:5,3:5:167:3:107:-6.07443,0,-12.9417	0/0:68:68,0:68:2440:0:0:0,-20.47,-217.955	0/1:50:24,26:24:851:26:921:-62.6237,0,-59.6189	0/1:77:46,31:46:1648:31:1104:-72.6838,0,-124.209	0/0:119:119,0:119:4243:0:0:0,-35.8226,-381.366	0/1:32:14,18:14:500:18:648:-45.5849,0,-35.5248	0/1:45:14,31:14:496:31:1116:-80.4778,0,-31.2182	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.4062	0/0:87:85,2:85:3044:2:72:0,-19.6261,-266.62	0/1:81:37,44:37:1324:44:1584:-108.115,0,-94.0962	0/1:172:97,75:97:3441:75:2700:-182.952,0,-256.884	0/1:79:44,35:44:1580:35:1260:-84.9902,0,-118.427	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.717	0/1:55:19,36:19:680:36:1292:-93.59,0,-44.9179	0/0:97:97,0:97:3471:0:0:0,-29.1999,-312.183	0/1:32:14,18:14:504:18:648:-45.3459,0,-35.3918	0/1:51:29,22:29:1027:22:792:-50.442,0,-76.1772	0/0:55:55,0:55:1963:0:0:0,-16.5566,-174.906	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.8286	0/1:51:16,35:16:576:35:1252:-92.1268,0,-36.6831	0/1:42:10,32:10:343:32:1148:-87.0055,0,-18.5386	0/0:108:106,0:106:3790:0:0:0,-31.9092,-340.187	0/0:58:58,0:58:2072:0:0:0,-17.4597,-185.277
chr09	4324755	.	A	C	85179.9	PASS	AB=0.461696;ABP=108.977;AC=62;AF=0.329787;AN=188;AO=3847;CIGAR=1X;DP=12784;DPB=12784;DPRA=1.17634;EPP=8356.66;EPPR=19400.8;GTI=2;LEN=1;MEANALT=1.02985;MQM=59.7624;MQMR=59.9661;NS=94;NUMALT=1;ODDS=0.357435;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136929;QR=317625;RO=8933;RPL=2206;RPP=183.2;RPPR=312.856;RPR=1641;RUN=1;SAF=2206;SAP=183.2;SAR=1641;SRF=5031;SRP=312.856;SRR=3902;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:16,9:16:576:9:320:-21.6166,0,-44.6492	0/0:151:151,0:151:5368:0:0:0,-45.4555,-483.254	0/0:234:233,1:233:8285:1:36:0,-66.8427,-741.935	0/0:297:294,2:294:10436:2:72:0,-82.628,-932.318	0/1:54:28,26:28:1000:26:936:-68.3038,0,-74.0598	0/1:40:21,19:21:756:19:668:-48.3544,0,-56.326	0/0:188:188,0:188:6678:0:0:0,-56.5936,-601.1	0/1:162:99,63:99:3519:63:2225:-151.7,0,-268.15	0/1:96:61,35:61:2171:35:1241:-83.0936,0,-166.754	0/1:171:84,87:84:2982:87:3093:-227.081,0,-217.134	0/1:124:69,55:69:2444:55:1936:-137.165,0,-182.886	0/0:150:150,0:150:5304:0:0:0,-45.1545,-477.5	0/1:173:87,86:87:3100:86:3060:-223.478,0,-227.122	0/1:145:73,72:73:2587:72:2563:-187.242,0,-189.427	0/1:149:67,82:67:2391:82:2931:-219.15,0,-170.593	0/1:105:52,53:52:1847:53:1904:-139.997,0,-134.901	0/1:134:73,61:73:2598:61:2169:-155.092,0,-193.73	0/0:108:108,0:108:3876:0:0:0,-32.5112,-348.989	0/1:63:21,42:21:752:42:1496:-115.968,0,-49.0414	0/1:251:140,111:140:4987:111:3937:-278.926,0,-373.422	0/1:237:112,125:112:3961:125:4462:-330.371,0,-285.337	0/1:87:45,42:45:1578:42:1503:-109.374,0,-116.117	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/1:105:44,61:44:1576:61:2179:-164.758,0,-110.523	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.322	0/1:312:187,125:187:6649:125:4445:-306.284,0,-504.568	0/0:326:324,2:324:11518:2:72:0,-91.2991,-1029.03	0/1:67:33,34:33:1175:34:1198:-87.9242,0,-85.8879	0/1:375:241,134:241:8597:134:4753:-315.017,0,-660.216	0/1:142:90,52:90:3211:52:1863:-125.174,0,-246.453	0/1:115:64,51:64:2288:51:1817:-129.189,0,-171.563	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:36:29,7:29:1036:7:237:-10.822,0,-82.7168	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:357:199,158:199:7057:158:5622:-398.394,0,-527.731	0/1:123:65,58:65:2288:58:2079:-150.352,0,-169.154	0/1:113:50,63:50:1779:63:2239:-167.745,0,-126.376	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:171:87,84:87:3112:84:2991:-217.89,0,-228.828	0/1:67:31,36:31:1097:36:1287:-95.8943,0,-78.869	0/1:149:78,71:78:2761:71:2481:-178.658,0,-203.878	0/1:136:65,71:65:2313:71:2514:-185.536,0,-167.489	0/1:135:74,61:74:2630:61:2171:-155.017,0,-196.308	0/0:92:91,1:91:3227:1:36:0,-24.0965,-287.053	0/0:107:107,0:107:3792:0:0:0,-32.2102,-341.478	0/0:207:207,0:207:7366:0:0:0,-62.3132,-662.991	0/1:130:90,40:90:3207:40:1425:-89.394,0,-249.719	0/1:237:134,103:134:4787:103:3685:-260.49,0,-359.639	0/0:186:184,0:184:6534:0:0:0,-55.3895,-587.785	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:183:183,0:183:6477:0:0:0,-55.0885,-583.018	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.19	0/1:23:10,13:10:345:13:468:-35.536,0,-24.4571	0/1:163:107,56:107:3767:56:2003:-131.463,0,-290.164	0/1:21:14,7:14:496:7:243:-15.8859,0,-38.6526	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:24:13,11:13:464:11:396:-28.758,0,-34.8728	0/1:101:50,51:50:1750:51:1801:-131.957,0,-127.375	0/1:212:122,90:122:4354:90:3201:-224.493,0,-328.216	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:358:179,179:179:6404:179:6420:-470.085,0,-468.68	0/1:214:121,93:121:4329:93:3324:-234.922,0,-325.346	0/1:88:48,40:48:1701:40:1440:-103.379,0,-126.882	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/1:180:95,85:95:3381:85:3043:-219.896,0,-250.318	0/1:135:43,92:43:1526:92:3262:-253.109,0,-96.9926	0/0:94:94,0:94:3360:0:0:0,-28.2968,-302.617	0/0:88:88,0:88:3120:0:0:0,-26.4906,-281.026	0/1:136:76,60:76:2694:60:2120:-150.11,0,-201.765	0/1:47:28,19:28:1004:19:684:-47.7181,0,-76.5275	0/0:123:123,0:123:4317:0:0:0,-37.0267,-388.702	0/1:161:103,58:103:3664:58:2038:-135.218,0,-281.5	0/1:166:95,71:95:3370:71:2522:-177.102,0,-253.545	0/0:354:354,0:354:12616:0:0:0,-106.565,-1135.27	0/1:100:37,63:37:1291:63:2222:-170.138,0,-86.3844	0/1:201:112,89:112:4001:89:3192:-226.996,0,-299.769	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/0:167:167,0:167:5936:0:0:0,-50.272,-534.348	0/1:180:102,78:102:3647:78:2808:-198.766,0,-274.249	0/1:165:97,68:97:3465:68:2428:-169.106,0,-262.391	0/1:172:93,79:93:3324:79:2836:-203.701,0,-247.595	0/0:158:158,0:158:5615:0:0:0,-47.5627,-505.473	0/1:132:72,60:72:2551:60:2116:-150.971,0,-190.102	0/0:258:256,2:256:9048:2:70:0,-71.0184,-807.382	0/1:54:30,24:30:1044:24:851:-60.6538,0,-78.0113	0/1:126:60,66:60:2118:66:2354:-174.118,0,-152.958	0/0:117:117,0:117:4179:0:0:0,-35.2205,-376.275	0/0:104:104,0:104:3686:0:0:0,-31.3071,-331.945	0/1:193:99,93:99:3507:93:3278:-237.088,0,-257.831	0/1:144:46,98:46:1631:98:3483:-270.315,0,-103.73	0/0:186:186,0:186:6647:0:0:0,-55.9916,-598.309	0/0:224:224,0:224:7985:0:0:0,-67.4307,-718.668
chr09	4332127	.	T	C	63194.7	PASS	AB=0.553026;ABP=162.83;AC=60;AF=0.319149;AN=188;AO=3627;CIGAR=1X;DP=9515;DPB=9515;DPRA=1.29715;EPP=7878.94;EPPR=12780;GTI=5;LEN=1;MEANALT=1.0303;MQM=59.9443;MQMR=59.9956;NS=94;NUMALT=1;ODDS=1.50846;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129733;QR=210143;RO=5884;RPL=0;RPP=7878.94;RPPR=12780;RPR=3627;RUN=1;SAF=3627;SAP=7878.94;SAR=0;SRF=5884;SRP=12780;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:19,16:19:676:16:572:-41.2774,0,-50.6319	0/0:81:79,2:79:2810:2:72:0,-17.5467,-246.3	0/0:107:107,0:107:3812:0:0:0,-32.2102,-343.279	0/0:160:160,0:160:5720:0:0:0,-48.1648,-514.918	0/1:60:21,39:21:752:39:1396:-107.877,0,-49.9445	0/1:40:26,14:26:936:14:504:-33.6569,0,-72.5183	0/0:159:157,2:157:5602:2:72:0,-41.027,-497.464	0/1:195:80,113:80:2860:113:4047:-306.012,0,-199.233	0/1:95:55,40:55:1968:40:1428:-100.215,0,-148.797	0/1:119:62,57:62:2220:57:2048:-148.769,0,-164.242	0/1:62:26,36:26:932:36:1296:-98.2801,0,-65.535	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.683	0/1:98:44,54:44:1576:54:1932:-144.656,0,-112.631	0/1:72:30,42:30:1076:42:1508:-114.34,0,-75.4787	0/1:101:42,59:42:1504:59:2120:-160.66,0,-105.251	0/1:68:29,39:29:1032:39:1404:-106.133,0,-72.7234	0/1:63:27,36:27:968:36:1292:-97.6189,0,-68.4725	0/0:91:90,1:90:3228:1:36:0,-23.7955,-287.143	0/1:58:23,35:23:815:35:1260:-96.2457,0,-56.211	0/1:214:117,97:117:4170:97:3492:-250.069,0,-311.06	0/1:134:69,65:69:2456:65:2313:-168.091,0,-180.957	0/1:134:41,93:41:1460:93:3293:-256.252,0,-91.358	0/0:78:77,1:77:2764:1:36:0,-19.8821,-245.403	0/1:120:63,57:63:2241:57:2013:-145.3,0,-165.828	0/0:96:96,0:96:3413:0:0:0,-28.8989,-307.384	0/1:270:125,145:125:4461:145:5180:-385.063,0,-320.382	0/0:150:149,1:149:5332:1:36:0,-41.5562,-476.416	0/1:39:15,24:15:536:24:856:-65.6209,0,-36.8346	0/1:250:118,131:118:4217:131:4669:-345.18,0,-304.542	0/1:110:48,62:48:1681:62:2221:-166.722,0,-118.458	0/1:90:42,48:42:1504:48:1720:-127.993,0,-108.562	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:16:9,7:9:324:7:244:-17.4829,0,-24.6894	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:259:114,145:114:4083:145:5191:-389.357,0,-289.688	0/1:176:77,99:77:2753:99:3556:-267.266,0,-195.029	0/1:71:43,28:43:1548:28:1008:-69.5008,0,-118.239	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:126:60,66:60:2148:66:2364:-175.066,0,-155.658	0/1:77:20,57:20:716:57:2043:-160.962,0,-41.5884	0/1:97:38,59:38:1360:59:2105:-160.518,0,-93.5007	0/1:90:37,53:37:1328:53:1900:-144.185,0,-92.7295	0/1:83:41,42:41:1460:42:1508:-111.029,0,-106.711	0/0:102:102,0:102:3630:0:0:0,-30.7051,-326.903	0/0:134:133,0:133:4756:0:0:0,-40.037,-427.987	0/0:140:140,0:140:5000:0:0:0,-42.1442,-450.149	0/1:156:73,83:73:2616:83:2976:-221.112,0,-188.727	0/1:95:48,47:48:1697:47:1680:-122.889,0,-124.416	0/0:169:169,0:169:6040:0:0:0,-50.8741,-543.705	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:159:159,0:159:5676:0:0:0,-47.8638,-510.961	0/0:46:46,0:46:1621:0:0:0,-13.8474,-146.177	0/1:26:9,17:9:320:17:612:-47.5867,0,-21.3156	0/1:146:72,74:72:2568:74:2651:-194.855,0,-187.42	0/1:76:33,43:33:1180:43:1540:-116.015,0,-83.6298	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:18:2,16:2:72:16:572:-46.3949,0,-1.41818	0/1:52:36,16:36:1296:16:568:-35.7983,0,-101.29	0/1:149:72,77:72:2576:77:2756:-203.428,0,-187.236	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:167:72,95:72:2553:95:3404:-256.302,0,-179.748	0/1:170:68,102:68:2411:102:3664:-278.787,0,-166.072	0/1:99:50,49:50:1792:49:1747:-127.712,0,-131.761	0/0:67:66,1:66:2348:1:36:0,-16.5707,-207.981	0/1:179:82,97:82:2932:97:3464:-258.082,0,-210.23	0/1:153:55,98:55:1956:98:3508:-269.602,0,-130.258	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/1:85:39,46:39:1396:46:1656:-123.741,0,-100.352	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/0:148:148,0:148:5292:0:0:0,-44.5524,-476.416	0/1:71:35,36:35:1244:36:1284:-94.4903,0,-90.8915	0/1:148:58,90:58:2061:90:3228:-246.183,0,-141.207	0/0:143:143,0:143:5124:0:0:0,-43.0473,-461.302	0/1:110:42,68:42:1489:68:2416:-184.584,0,-101.189	0/1:76:28,48:28:1008:48:1711:-131.397,0,-68.1581	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/1:134:78,56:78:2792:56:2004:-140.296,0,-211.182	0/1:354:131,223:131:4676:223:7964:-610.221,0,-314.438	0/1:150:60,90:60:2152:90:3224:-245.225,0,-148.793	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/1:98:48,50:48:1708:50:1779:-130.891,0,-124.505	0/0:178:178,0:178:6371:0:0:0,-53.5833,-573.471	0/1:56:25,31:25:892:31:1108:-83.1733,0,-63.742	0/1:105:53,52:53:1882:52:1845:-134.721,0,-138.049	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/1:122:45,77:45:1616:77:2751:-211.106,0,-109.004	0/1:91:28,63:28:999:63:2238:-174.29,0,-62.8308	0/0:93:93,0:93:3316:0:0:0,-27.9958,-298.653	0/0:123:123,0:123:4376:0:0:0,-37.0267,-394.014
chr09	4332215	.	T	C	56396.8	PASS	AB=0.572261;ABP=259.721;AC=64;AF=0.344086;AN=186;AO=3247;CIGAR=1X;DP=7807;DPB=7807;DPRA=1.36129;EPP=7053.78;EPPR=9863.7;GTI=4;LEN=1;MEANALT=1.0303;MQM=59.9951;MQMR=60;NS=93;NUMALT=1;ODDS=3.32123;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115454;QR=162624;RO=4557;RPL=0;RPP=7053.78;RPPR=9863.7;RPR=3247;RUN=1;SAF=0;SAP=7053.78;SAR=3247;SRF=2;SRP=9881.05;SRR=4555;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:13,21:13:468:21:739:-56.5974,0,-32.2246	0/0:115:114,1:114:4084:1:36:0,-31.0202,-364.147	0/0:92:92,0:92:3270:0:0:0,-27.6948,-294.518	0/0:124:124,0:124:4423:0:0:0,-37.3277,-398.243	0/1:78:43,35:43:1544:35:1251:-89.4139,0,-115.773	0/1:47:22,25:22:761:25:900:-67.1726,0,-54.6584	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/1:137:46,91:46:1644:91:3250:-251.479,0,-107.007	0/1:87:27,60:27:968:60:2112:-164.158,0,-61.2478	0/1:109:41,68:41:1464:68:2412:-184.522,0,-99.2438	0/1:60:28,32:28:1004:32:1148:-85.568,0,-72.6141	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.636	0/1:80:29,51:29:1023:51:1803:-138.469,0,-68.2993	0/1:61:25,36:25:900:36:1276:-96.7802,0,-62.9582	0/1:73:33,40:33:1176:40:1419:-106.031,0,-84.1726	0/1:65:30,35:30:1054:35:1235:-91.8865,0,-75.6022	0/1:70:33,37:33:1168:37:1312:-97.3096,0,-84.3551	0/0:62:62,0:62:2196:0:0:0,-18.6639,-197.906	0/1:61:30,31:30:1076:31:1104:-81.3078,0,-78.79	0/1:211:87,123:87:3120:123:4384:-331.156,0,-217.45	0/1:114:59,55:59:2103:55:1972:-143.437,0,-155.221	0/1:134:45,89:45:1612:89:3187:-246.715,0,-105.032	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:120:56,64:56:1986:64:2288:-170.058,0,-142.889	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/1:284:136,148:136:4868:148:5283:-390.112,0,-352.781	0/0:110:110,0:110:3932:0:0:0,-33.1133,-354.073	0/1:42:15,27:15:536:27:947:-72.9005,0,-35.9316	0/1:217:93,124:93:3307:124:4424:-333.007,0,-232.526	0/1:101:48,53:48:1724:53:1878:-138.894,0,-125.041	0/1:96:30,66:30:1067:66:2329:-180.968,0,-67.4423	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:14:5,9:5:176:9:324:-25.2914,0,-11.9706	.:.:.:.:.:.:.:.	0/1:5:3,2:3:104:2:71:-5.23691,0,-8.19766	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:201:95,106:95:3383:106:3730:-275.396,0,-244.179	0/1:155:79,76:79:2816:76:2705:-197.034,0,-207.021	0/1:60:24,36:24:860:36:1288:-98.1618,0,-59.66	0/1:9:1,8:1:36:8:280:-22.83,0,-0.889005	0/1:70:24,46:24:860:46:1644:-127.177,0,-56.6497	0/1:65:28,37:28:1004:37:1324:-99.8951,0,-71.1089	0/1:146:60,86:60:2156:86:3075:-233.028,0,-150.357	0/1:81:41,40:41:1467:40:1423:-103.983,0,-107.942	0/1:60:24,36:24:856:36:1262:-95.8178,0,-59.2993	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.692	0/0:135:135,0:135:4824:0:0:0,-40.639,-434.316	0/1:120:41,78:41:1464:78:2787:-214.888,0,-95.8737	0/1:116:63,53:63:2237:53:1904:-136.718,0,-166.673	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	0/0:115:114,0:114:4080:0:0:0,-34.3174,-367.027	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:9:2,7:2:72:7:234:-18.6767,0,-4.12745	0/1:116:38,78:38:1347:78:2787:-216.151,0,-86.61	0/1:23:6,17:6:212:17:612:-48.4897,0,-12.5011	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:57:17,40:17:604:40:1431:-111.928,0,-37.5319	0/1:120:57,63:57:2010:63:2243:-166.01,0,-145.049	0/1:8:2,6:2:72:6:207:-16.5587,0,-4.42848	0/1:178:74,104:74:2652:104:3710:-280.518,0,-185.343	0/1:200:86,114:86:3084:114:4048:-304.303,0,-217.582	0/1:72:40,32:40:1436:32:1140:-81.235,0,-107.864	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:183:68,115:68:2440:115:4111:-315.03,0,-164.766	0/1:91:17,74:17:612:74:2638:-210.272,0,-28.0197	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/1:87:37,50:37:1302:50:1775:-133.843,0,-91.2902	0/1:12:3,9:3:104:9:316:-25.1665,0,-6.09045	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:34:10,24:10:352:24:864:-67.8475,0,-21.7832	0/1:118:46,72:46:1644:72:2513:-190.898,0,-112.727	0/0:154:154,0:154:5508:0:0:0,-46.3586,-495.847	0/1:99:37,62:37:1316:62:2207:-169.093,0,-88.9398	0/1:67:34,33:34:1201:33:1180:-86.339,0,-88.2246	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.823	0/1:99:42,57:42:1500:57:2009:-151.279,0,-105.493	0/1:213:104,109:104:3679:109:3894:-286.534,0,-267.197	0/1:111:54,57:54:1936:57:2009:-147.668,0,-141.102	0/0:82:81,1:81:2872:1:36:0,-21.0862,-255.121	0/1:96:45,51:45:1607:51:1812:-134.463,0,-116.02	0/0:141:140,1:140:4976:1:25:0,-39.9454,-445.493	0/1:53:30,23:30:1076:23:786:-55.0971,0,-81.1983	0/1:72:41,31:41:1472:31:1094:-77.0941,0,-111.102	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:65:38,27:38:1360:27:960:-67.1493,0,-103.134	0/1:85:29,56:29:1040:56:1991:-153.876,0,-68.3268	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:100:100,0:100:3571:0:0:0,-30.103,-321.598
chr09	4332263	.	T	G	26878.7	PASS	AB=0.378406;ABP=629.836;AC=62;AF=0.333333;AN=186;AO=1857;CIGAR=1X;DP=7933;DPB=7933;DPRA=0.84836;EPP=4035.43;EPPR=13160;GTI=5;LEN=1;MEANALT=1.07937;MQM=60;MQMR=59.9893;NS=93;NUMALT=1;ODDS=0.560129;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66351;QR=217067;RO=6059;RPL=0;RPP=4035.43;RPPR=94.4082;RPR=1857;RUN=1;SAF=1857;SAP=4035.43;SAR=0;SRF=3282;SRP=94.4082;SRR=2777;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:27,20:27:964:20:716:-50.6193,0,-72.9284	0/0:98:98,0:98:3490:0:0:0,-29.5009,-314.309	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.717	0/0:217:217,0:217:7772:0:0:0,-65.3235,-699.51	0/1:46:29,15:29:1036:15:540:-35.3314,0,-79.9489	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:87:55,32:55:1972:32:1144:-77.0799,0,-151.565	0/1:89:45,44:45:1616:44:1584:-116.06,0,-118.938	0/1:91:74,17:74:2641:17:611:-27.9294,0,-210.541	0/1:34:24,10:24:864:10:360:-22.5093,0,-67.8475	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.894	0/1:79:49,30:49:1752:30:1072:-73.0111,0,-134.183	0/1:46:28,18:28:1000:18:644:-44.4432,0,-76.468	0/1:57:41,16:41:1472:16:561:-33.6584,0,-115.617	0/1:41:30,11:30:1080:11:388:-22.9151,0,-85.171	0/1:41:30,11:30:1076:11:396:-23.6405,0,-84.8106	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:26:22,4:22:788:4:144:-5.48684,0,-63.418	0/1:171:121,50:121:4340:50:1784:-109.367,0,-339.298	0/1:169:94,75:94:3356:75:2696:-192.01,0,-251.383	0/1:133:63,70:63:2264:70:2493:-184.585,0,-163.985	0/0:95:94,0:94:3372:0:0:0,-28.2968,-303.336	0/1:90:59,31:59:2120:31:1104:-72.5779,0,-163.976	0/0:84:84,0:84:3009:0:0:0,-25.2865,-271.039	0/1:256:169,87:169:6045:87:3116:-203.603,0,-467.089	0/0:212:208,0:208:7441:0:0:0,-62.6142,-669.42	0/1:22:15,7:15:532:7:252:-16.4063,0,-41.5904	0/1:238:161,77:161:5776:77:2745:-175.646,0,-448.308	0/1:133:71,62:71:2548:62:2201:-158.317,0,-189.533	0/1:81:50,31:50:1792:31:1116:-76.3683,0,-137.179	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:195:142,53:142:5100:53:1904:-112.937,0,-400.44	0/1:131:97,34:97:3472:34:1205:-69.319,0,-273.257	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	.:.:.:.:.:.:.:.	0/1:82:43,39:43:1548:39:1394:-101.074,0,-114.929	0/1:45:19,26:19:680:26:932:-70.6525,0,-47.9828	0/1:103:56,47:56:1997:47:1650:-117.778,0,-148.996	0/1:43:30,13:30:1076:13:468:-29.5154,0,-84.2086	0/1:44:36,8:36:1288:8:284:-12.658,0,-102.978	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.468	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.332	0/0:189:188,0:188:6736:0:0:0,-56.5936,-605.954	0/1:110:71,39:71:2552:39:1394:-92.6455,0,-196.817	0/1:96:56,40:56:2016:40:1429:-100.009,0,-152.814	0/0:195:195,0:195:7004:0:0:0,-58.7008,-630.412	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:133:133,0:133:4780:0:0:0,-40.037,-430.355	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:72:50,22:50:1784:22:788:-49.5706,0,-139.169	0/1:43:18,25:18:640:25:900:-68.3767,0,-44.985	0/1:18:8,9:8:284:9:324:-24.0285,0,-20.4266	0/1:26:14,12:14:477:12:424:-30.6696,0,-35.4264	0/1:63:45,18:45:1608:18:648:-39.687,0,-125.555	0/1:87:60,26:60:2152:26:936:-58.3111,0,-167.699	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:157:92,65:92:3300:65:2306:-160.536,0,-249.957	0/1:168:108,60:108:3861:60:2156:-143.734,0,-297.111	0/1:50:34,16:34:1212:16:576:-37.1235,0,-94.3348	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:147:86,61:86:3084:61:2196:-153.654,0,-233.536	0/1:94:16,78:16:576:78:2800:-223.943,0,-23.8782	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:95:94,0:94:3372:0:0:0,-28.2968,-303.336	0/1:42:29,13:29:1040:13:468:-29.8164,0,-81.2711	0/1:21:13,8:13:468:8:284:-19.5817,0,-36.138	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.14	0/1:64:32,31:32:1152:31:1090:-79.083,0,-84.6654	0/1:114:69,45:69:2472:45:1620:-111.773,0,-188.416	0/0:174:173,0:173:6189:0:0:0,-52.0782,-556.746	0/1:84:54,30:54:1928:30:1050:-69.523,0,-148.51	0/1:96:43,53:43:1544:53:1892:-141.659,0,-110.354	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.592	0/1:92:63,29:63:2256:29:1036:-65.8586,0,-175.608	0/1:215:136,79:136:4876:79:2806:-188.056,0,-374.27	0/1:61:46,15:46:1633:15:525:-29.2152,0,-128.894	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:64:44,20:44:1576:20:715:-45.4114,0,-122.864	0/0:167:166,1:166:5952:1:36:0,-46.6737,-532.188	0/0:26:23,2:23:828:2:72:0,-1.04885,-68.0074	0/1:65:46,19:46:1652:19:680:-41.9622,0,-129.402	0/0:77:76,0:76:2728:0:0:0,-22.8783,-245.403	0/0:40:39,0:39:1404:0:0:0,-11.7402,-126.299	0/1:58:37,21:37:1328:21:748:-50.1856,0,-102.362	0/1:72:35,37:35:1256:37:1328:-98.1481,0,-91.6711	0/0:124:123,0:123:4393:0:0:0,-37.0267,-395.182	0/0:137:137,0:137:4901:0:0:0,-41.2411,-441.24
chr09	4332653	.	T	C	80127.2	PASS	AB=0.49861;ABP=3.0767;AC=127;AF=0.675532;AN=188;AO=4029;CIGAR=1X;DP=6033;DPB=6033;DPRA=0;EPP=8751.87;EPPR=4352.47;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9134;MQMR=59.1513;NS=94;NUMALT=1;ODDS=1.9758;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143564;QR=70903;RO=2003;RPL=0;RPP=8751.87;RPPR=4352.47;RPR=4029;RUN=1;SAF=0;SAP=8751.87;SAR=4029;SRF=0;SRP=4352.47;SRR=2003;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:16,10:16:557:10:356:-24.5545,0,-42.6288	1/1:94:2,92:2:72:92:3247:-285.615,-21.4601,0	1/1:106:0,106:0:0:106:3799:-342.101,-31.9092,0	1/1:160:0,160:0:0:160:5723:-515.185,-48.1648,0	0/1:45:18,27:18:625:27:968:-73.891,0,-43.0261	0/1:25:18,7:18:644:7:252:-15.4949,0,-50.7648	1/1:95:0,95:0:0:95:3381:-304.504,-28.5979,0	0/1:102:52,50:52:1852:50:1776:-129.404,0,-136.094	0/1:47:28,19:28:1004:19:661:-45.6632,0,-76.5271	0/1:50:27,23:27:972:23:820:-59.071,0,-72.7449	0/1:26:12,14:12:409:14:478:-35.5164,0,-29.3087	1/1:39:0,39:0:0:39:1371:-123.674,-11.7402,0	0/1:28:8,20:8:275:20:704:-55.2557,0,-16.6317	0/1:41:20,21:20:708:21:744:-54.9356,0,-51.6832	0/1:33:16,17:16:572:17:603:-44.6655,0,-41.8343	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.1383	0/1:35:18,17:18:640:17:590:-42.8881,0,-47.354	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:16:7,9:7:252:9:307:-23.1438,0,-17.837	0/1:134:74,60:74:2630:60:2123:-150.998,0,-196.469	0/1:77:45,32:45:1582:32:1140:-79.7299,0,-119.486	0/1:68:43,25:43:1503:25:891:-60.0224,0,-115.042	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:57:30,27:30:1068:27:963:-69.8272,0,-79.1835	1/1:39:0,39:0:0:39:1396:-125.805,-11.7402,0	0/1:245:138,107:138:4871:107:3822:-270.424,0,-363.018	1/1:117:0,117:0:0:117:4173:-375.751,-35.2205,0	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:209:101,108:101:3571:108:3853:-283.964,0,-258.553	0/1:119:41,78:41:1446:78:2796:-216.055,0,-94.5503	0/1:82:32,50:32:1148:50:1796:-137.238,0,-78.9445	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:5:0,5:0:0:5:174:-16.0013,-1.50515,0	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.2746	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:93:47,46:47:1664:46:1637:-119.621,0,-121.903	0/1:178:103,75:103:3624:75:2657:-185.792,0,-272.65	0/0:15:14,1:14:500:1:36:0,-0.917175,-41.7379	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:103:54,49:54:1895:49:1743:-126.148,0,-139.085	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	0/1:93:49,44:49:1751:44:1571:-112.828,0,-128.508	0/1:25:9,16:9:316:16:576:-44.6492,0,-21.2531	0/1:25:15,10:15:528:10:360:-25.2186,0,-40.3256	1/1:38:0,38:0:0:38:1353:-122.068,-11.4391,0	1/1:91:0,91:0:0:91:3241:-291.911,-27.3937,0	1/1:146:0,146:0:0:146:5197:-467.864,-43.9504,0	0/1:74:25,49:25:900:49:1728:-133.526,0,-58.9965	0/1:81:41,40:41:1468:40:1436:-105.154,0,-107.853	1/1:157:1,156:1:36:156:5550:-495.998,-43.6634,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:139:0,139:0:0:139:4970:-447.418,-41.8432,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/1:83:42,41:42:1489:41:1457:-106.44,0,-109.221	0/1:29:13,16:13:453:16:576:-43.4451,0,-32.3697	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:22:1,21:1:36:21:725:-61.9695,-3.02439,0	0/1:85:36,49:36:1280:49:1740:-131.291,0,-89.6835	0/1:101:57,44:57:2023:44:1575:-111.637,0,-151.403	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:122:68,54:68:2436:54:1944:-138.51,0,-182.678	0/1:185:85,100:85:3018:100:3569:-265.726,0,-215.926	0/1:60:30,30:30:1065:30:1080:-79.4515,0,-77.9402	1/1:71:0,70:0:0:70:2490:-223.993,-21.0721,0	0/1:69:38,31:38:1345:31:1099:-78.4478,0,-100.403	0/1:109:63,46:63:2198:46:1630:-114.176,0,-165.135	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:74:20,54:20:712:54:1931:-151.79,0,-41.5716	0/1:16:5,11:5:176:11:392:-30.8036,0,-11.3685	1/1:126:0,126:0:0:126:4488:-404.058,-37.9298,0	0/1:42:21,21:21:737:21:752:-55.363,0,-53.9715	0/1:121:67,54:67:2381:54:1932:-137.73,0,-177.944	1/1:152:0,152:0:0:152:5417:-487.656,-45.7566,0	0/1:64:27,37:27:934:37:1328:-100.556,0,-65.067	0/1:59:33,26:33:1146:26:928:-66.0704,0,-85.6805	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:74:0,74:0:0:74:2607:-234.868,-22.2762,0	0/1:66:36,30:36:1272:30:1072:-76.9107,0,-94.2503	0/1:181:78,103:78:2761:103:3682:-277.089,0,-194.153	0/1:63:29,34:29:1021:34:1216:-90.7817,0,-73.1766	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:26:12,14:12:428:14:500:-37.5094,0,-31.0287	1/1:57:0,57:0:0:57:2048:-184.574,-17.1587,0	0/1:21:12,9:12:428:9:324:-23.1842,0,-32.5372	0/1:52:29,23:29:1032:23:803:-56.9335,0,-77.4165	1/1:34:0,34:0:0:34:1207:-108.935,-10.235,0	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	0/1:57:24,33:24:845:33:1171:-88.538,0,-59.2068	0/1:32:20,12:20:704:12:432:-29.5882,0,-53.9787	1/1:42:1,41:1:36:41:1444:-126.655,-9.04499,0	1/1:36:0,36:0:0:36:1288:-116.223,-10.8371,0
chr09	4332671	.	A	G	32323.7	PASS	AB=0.501393;ABP=3.07684;AC=62;AF=0.329787;AN=188;AO=1998;CIGAR=1X;DP=5976;DPB=5976;DPRA=1.15422;EPP=4332.93;EPPR=8612.92;GTI=2;LEN=1;MEANALT=1;MQM=59.1476;MQMR=59.908;NS=94;NUMALT=1;ODDS=1.66713;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70038;QR=142102;RO=3977;RPL=1;RPP=4332.93;RPPR=8612.92;RPR=1997;RUN=1;SAF=0;SAP=4341.61;SAR=1998;SRF=0;SRP=8638.96;SRR=3977;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:10,16:10:360:16:541:-41.1825,0,-24.9175	0/0:92:90,2:90:3232:2:68:0,-21.2371,-284.641	0/0:106:106,0:106:3785:0:0:0,-31.9092,-340.847	0/0:156:156,0:156:5576:0:0:0,-46.9607,-501.964	0/1:44:26,18:26:932:18:640:-44.684,0,-70.9535	0/1:27:9,18:9:309:18:648:-50.5241,0,-20.0044	0/0:95:95,0:95:3380:0:0:0,-28.5978,-304.415	0/1:101:49,52:49:1760:52:1826:-134.018,0,-128.266	0/1:48:19,29:19:684:29:994:-75.3155,0,-47.4409	0/1:48:22,26:22:788:26:919:-68.5767,0,-56.7954	0/1:28:14,14:14:496:14:485:-35.5481,0,-36.5454	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/1:34:22,12:22:792:12:400:-26.0467,0,-61.3707	0/1:41:22,19:22:774:19:640:-45.5272,0,-57.6328	0/1:34:16,18:16:567:18:612:-45.1174,0,-41.1257	0/1:15:5,10:5:180:10:324:-24.9384,0,-12.0366	0/1:36:17,19:17:612:19:664:-49.2087,0,-44.5764	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:18:8,10:8:288:10:344:-25.8139,0,-20.8489	0/1:130:56,74:56:1991:74:2640:-198.579,0,-140.328	0/1:78:34,44:34:1205:44:1510:-112.661,0,-85.2736	0/1:70:26,44:26:913:44:1564:-119.961,0,-61.3955	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.4675	0/1:58:28,30:28:1004:30:1030:-75.5154,0,-73.2161	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.763	0/1:241:105,136:105:3747:136:4783:-357.414,0,-264.882	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/1:16:8,8:8:288:8:269:-19.7196,0,-21.4509	0/1:207:106,101:106:3799:101:3541:-256.548,0,-279.785	0/1:116:74,42:74:2636:42:1477:-98.2393,0,-202.568	0/1:79:46,33:46:1648:33:1176:-82.3206,0,-124.827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:12:4,8:4:144:8:284:-22.2532,0,-9.70126	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:91:46,45:46:1648:45:1578:-114.814,0,-121.215	0/1:173:74,99:74:2656:99:3514:-264.135,0,-187.208	1/1:15:1,14:1:36:14:468:-38.8398,-0.917175,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:100:47,53:47:1676:53:1873:-138.513,0,-121.024	0/1:17:11,6:11:396:6:208:-13.9416,0,-30.8652	0/1:90:43,47:43:1536:47:1662:-122.68,0,-110.583	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:24:10,14:10:345:14:482:-36.4813,0,-24.1561	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:86:86,0:86:3037:0:0:0,-25.8886,-273.561	0/0:141:140,0:140:4988:0:0:0,-42.1442,-448.769	0/1:72:48,24:48:1720:24:839:-54.1048,0,-133.411	0/1:81:41,40:41:1472:40:1411:-102.75,0,-108.393	0/0:154:153,1:153:5443:1:36:0,-42.7603,-486.39	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:139:139,0:139:4969:0:0:0,-41.8432,-447.33	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:16:11,5:11:396:5:176:-11.3685,0,-31.1663	0/1:84:41,43:41:1468:43:1485:-108.642,0,-107.112	0/1:28:15,13:15:536:13:455:-32.8516,0,-40.146	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:22:20,2:20:716:2:72:-0.214063,0,-58.1451	0/1:81:47,34:47:1680:34:1208:-84.5356,0,-127.092	0/1:102:44,58:44:1580:58:2027:-151.95,0,-111.786	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:118:53,65:53:1904:65:2269:-168.858,0,-136.099	0/1:182:97,85:97:3476:85:2990:-214.272,0,-258.263	0/1:59:30,29:30:1068:29:1020:-74.1936,0,-78.6713	0/0:72:72,0:72:2558:0:0:0,-21.6742,-230.47	0/1:72:33,39:33:1188:39:1375:-102.199,0,-85.5498	0/1:111:46,65:46:1648:65:2312:-174.79,0,-115.194	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:71:52,19:52:1868:19:656:-37.9863,0,-147.026	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/0:125:125,0:125:4444:0:0:0,-37.6287,-399.994	0/1:42:21,21:21:756:21:735:-53.7923,0,-55.724	0/1:121:54,67:54:1923:67:2338:-174.071,0,-136.917	0/0:151:151,0:151:5420:0:0:0,-45.4555,-487.896	0/1:65:37,28:37:1332:28:996:-70.3521,0,-100.615	0/1:60:26,34:26:932:34:1193:-89.6106,0,-66.1299	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:72:72,0:72:2554:0:0:0,-21.6742,-230.101	0/1:70:29,41:29:1032:41:1461:-110.298,0,-72.1076	0/1:179:103,76:103:3688:76:2658:-185.491,0,-278.236	0/1:62:34,28:34:1224:28:978:-69.6113,0,-91.8032	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/1:24:14,10:14:504:10:356:-25.1565,0,-38.4734	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.574	0/1:23:10,13:10:356:13:435:-32.5443,0,-25.4576	0/1:51:23,28:23:820:28:940:-69.5401,0,-58.77	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:57:33,24:33:1179:24:856:-60.2009,0,-89.2585	0/1:32:12,20:12:432:20:701:-53.701,0,-29.5882	0/0:40:39,1:39:1400:1:36:0,-8.44292,-122.701	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.223
chr09	4338098	.	A	G	18339	PASS	AB=0.315287;ABP=1398.84;AC=60;AF=0.326087;AN=184;AO=1487;CIGAR=1X;DP=8022;DPB=8022;DPRA=0.799502;EPP=3231.99;EPPR=14180.6;GTI=9;LEN=1;MEANALT=1.03333;MQM=59.9744;MQMR=59.9789;NS=92;NUMALT=1;ODDS=1.117;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52848;QR=233532;RO=6533;RPL=1;RPP=3223.31;RPPR=91.8532;RPR=1486;RUN=1;SAF=1;SAP=3223.31;SAR=1486;SRF=3526;SRP=92.5419;SRR=3007;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:29,18:29:1036:18:624:-42.333,0,-79.4055	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.59	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/0:264:264,0:264:9429:0:0:0,-79.4719,-848.346	0/1:9:7,2:7:248:2:68:-3.74844,0,-19.9549	0/1:14:11,3:11:388:3:108:-5.86075,0,-31.0429	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.776	0/1:68:48,20:48:1716:20:716:-44.2977,0,-134.247	0/1:40:29,11:29:1040:11:383:-22.762,0,-81.8732	0/1:128:75,53:75:2679:53:1876:-130.584,0,-202.823	0/1:61:50,11:50:1796:11:396:-17.6199,0,-143.56	0/0:149:149,0:149:5293:0:0:0,-44.8535,-476.507	0/1:111:72,39:72:2563:39:1384:-91.4445,0,-197.506	0/1:69:57,12:57:2013:12:428:-18.0877,0,-160.67	0/1:101:69,32:69:2484:32:1127:-71.3334,0,-193.406	0/1:94:58,36:58:2080:36:1288:-87.9268,0,-159.173	0/1:49:40,9:40:1427:9:324:-14.7554,0,-113.976	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:30:25,5:25:896:5:180:-7.52116,0,-71.9295	0/1:76:56,20:56:2004:20:707:-41.0763,0,-157.755	0/1:168:117,51:117:4192:51:1816:-113.147,0,-326.879	0/1:35:12,23:12:424:23:812:-62.8635,0,-27.9604	0/0:119:119,0:119:4245:0:0:0,-35.8226,-382.229	0/1:32:23,9:23:824:9:320:-19.5085,0,-64.8504	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.081	0/1:160:109,50:109:3920:50:1763:-110.728,0,-304.768	0/0:157:157,0:157:5625:0:0:0,-47.2617,-506.369	0/1:54:37,17:37:1315:17:612:-39.1578,0,-102.395	0/1:180:143,37:143:5114:37:1307:-63.7453,0,-406.216	0/1:122:77,45:77:2764:45:1612:-108.644,0,-212.275	0/1:91:51,40:51:1819:40:1436:-102.144,0,-136.597	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:277:188,89:188:6709:89:3171:-202.229,0,-520.5	0/1:58:39,19:39:1400:19:675:-43.6172,0,-108.839	0/1:57:44,13:44:1567:13:464:-24.7476,0,-124.162	.:.:.:.:.:.:.:.	0/1:136:92,44:92:3270:44:1572:-100.832,0,-253.578	0/1:26:18,8:18:644:8:284:-18.0766,0,-50.4638	0/1:100:69,31:69:2480:31:1108:-69.928,0,-193.35	0/1:91:64,27:64:2270:27:972:-60.4042,0,-177.168	0/1:86:64,22:64:2296:22:779:-44.5435,0,-180.984	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:69:69,0:69:2453:0:0:0,-20.7711,-221.023	0/0:163:163,0:163:5837:0:0:0,-49.0679,-525.44	0/1:31:19,12:19:676:12:432:-29.8893,0,-51.8361	0/1:105:71,34:71:2540:34:1211:-77.6874,0,-197.243	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.249	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.924	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:83:60,23:60:2143:23:813:-48.5036,0,-168.152	0/1:25:17,8:17:608:8:288:-18.7417,0,-47.5263	.:.:.:.:.:.:.:.	0/1:8:6,2:6:208:2:68:-4.04947,0,-16.6508	0/1:66:43,23:43:1536:23:828:-54.9761,0,-118.665	0/1:109:72,37:72:2584:37:1315:-85.8388,0,-199.997	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:304:213,91:213:7611:91:3225:-198.951,0,-593.513	0/1:104:68,36:68:2424:36:1275:-83.7452,0,-187.105	0/1:62:37,25:37:1324:25:871:-60.0416,0,-100.798	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:120:90,30:90:3224:30:1072:-60.6689,0,-254.248	0/1:57:29,28:29:1040:28:983:-71.6238,0,-76.7557	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:57:38,19:38:1360:19:668:-43.287,0,-105.542	0/1:19:13,6:13:464:6:212:-13.7052,0,-36.3779	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.709	0/1:119:80,39:80:2859:39:1396:-90.1165,0,-221.725	0/1:102:67,35:67:2387:35:1252:-82.28,0,-184.382	0/0:215:215,0:215:7708:0:0:0,-64.7214,-693.752	0/1:34:21,13:21:752:13:455:-31.0469,0,-57.7575	0/1:128:96,32:96:3424:32:1131:-63.5659,0,-269.843	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:101:99,1:99:3533:1:32:0,-27.2436,-314.959	0/1:68:50,18:50:1783:18:636:-37.098,0,-140.279	0/1:93:60,33:60:2144:33:1171:-77.7009,0,-165.232	0/1:92:60,32:60:2144:32:1148:-75.9351,0,-165.533	0/0:129:129,0:129:4607:0:0:0,-38.8329,-414.795	0/1:83:51,32:51:1803:32:1144:-78.284,0,-137.566	0/0:219:219,0:219:7826:0:0:0,-65.9256,-704.369	0/1:29:19,10:19:680:10:356:-23.6514,0,-52.7993	0/1:83:64,19:64:2296:19:671:-35.7303,0,-181.916	0/0:117:117,0:117:4162:0:0:0,-35.2205,-374.764	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:75:60,15:60:2156:15:536:-25.9976,0,-171.728	0/1:74:41,33:41:1472:33:1167:-83.0602,0,-110.5	0/0:395:395,0:395:14166:0:0:0,-118.907,-1274.7	0/0:191:191,0:191:6801:0:0:0,-57.4967,-612.165
chr09	4480827	.	C	T	148481	PASS	AB=0.520369;ABP=25.6566;AC=129;AF=0.68617;AN=188;AO=7289;CIGAR=1X;DP=10313;DPB=10313;DPRA=0;EPP=15830.9;EPPR=6560.86;GTI=0;LEN=1;MEANALT=1.04255;MQM=56.1656;MQMR=56.2493;NS=94;NUMALT=1;ODDS=9.51802;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=260806;QR=108019;RO=3020;RPL=0;RPP=15830.9;RPPR=6560.86;RPR=7289;RUN=1;SAF=7289;SAP=15830.9;SAR=0;SRF=3020;SRP=6560.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:16,45:16:561:45:1616:-127.292,0,-32.2975	1/1:156:0,156:0:0:156:5558:-498.711,-46.9607,0	1/1:275:0,275:0:0:275:9880:-887.049,-82.7833,0	1/1:155:2,153:2:72:153:5464:-483.91,-39.8262,0	0/1:69:31,38:31:1112:38:1345:-100.514,0,-79.445	0/1:38:19,19:19:680:19:684:-50.0359,0,-50.005	1/1:205:1,204:1:36:204:7301:-651.912,-58.1146,0	0/1:146:48,98:48:1699:98:3519:-272.372,0,-109.007	0/1:98:59,39:59:2103:39:1387:-94.8621,0,-159.616	0/1:121:65,56:65:2314:56:1987:-142.191,0,-171.731	0/1:82:39,43:39:1400:43:1530:-112.815,0,-101.532	1/1:83:0,83:0:0:83:2968:-267.215,-24.9855,0	0/1:76:46,30:46:1644:30:1076:-73.9725,0,-124.911	0/1:88:58,30:58:2071:30:1080:-70.7178,0,-159.618	0/1:63:30,33:30:1076:33:1184:-87.7129,0,-78.1223	0/1:58:26,32:26:923:32:1148:-85.9933,0,-65.8907	0/1:83:45,38:45:1620:38:1368:-98.0958,0,-121.035	1/1:61:1,60:1:36:60:2156:-189.934,-14.7663,0	0/1:55:31,24:31:1112:24:855:-60.4086,0,-83.6472	0/1:267:130,137:130:4656:137:4879:-358.425,0,-338.591	0/1:187:84,102:84:3003:102:3645:-271.17,0,-213.47	0/1:171:108,63:108:3868:63:2245:-150.461,0,-295.924	1/1:38:0,38:0:0:38:1353:-121.871,-11.4391,0	0/1:167:64,103:64:2300:103:3704:-283.003,0,-156.737	1/1:94:0,94:0:0:94:3367:-302.973,-28.2968,0	0/1:301:147,154:147:5288:154:5536:-406.487,0,-384.932	1/1:196:0,196:0:0:196:7031:-630.715,-59.0019,0	0/1:23:10,13:10:360:13:468:-35.5158,0,-24.7771	0/1:341:149,192:149:5317:192:6896:-516.97,0,-374.5	0/1:136:48,88:48:1728:88:3117:-239.175,0,-114.5	0/1:121:71,50:71:2544:50:1779:-123.748,0,-192.669	1/1:1:0,1:0:0:1:36:-3.59656,-0.30103,0	0/1:33:20,13:20:716:13:464:-31.7574,0,-54.8006	1/1:6:0,6:0:0:6:212:-19.4163,-1.80618,0	0/1:13:5,8:5:180:8:284:-21.9784,0,-12.6308	1/1:10:0,10:0:0:10:360:-32.7017,-3.0103,0	0/1:184:93,91:93:3340:91:3261:-237.146,0,-244.912	0/1:182:91,90:91:3244:90:3236:-236.393,0,-236.838	0/1:80:36,44:36:1270:44:1576:-117.727,0,-90.211	0/1:9:5,4:5:176:4:144:-10.598,0,-13.4688	1/1:160:0,160:0:0:160:5719:-514.38,-48.1648,0	0/1:54:32,22:32:1144:22:788:-54.9561,0,-86.9663	0/1:136:67,69:67:2408:69:2449:-178.213,0,-175.803	0/1:77:40,37:40:1428:37:1328:-96.4956,0,-105.569	0/1:63:34,29:34:1216:29:1044:-74.9962,0,-90.731	1/1:72:1,71:1:36:71:2526:-222.887,-18.0759,0	1/1:136:0,136:0:0:136:4863:-435.646,-40.9401,0	1/1:227:2,225:2:72:225:8051:-716.191,-61.4987,0	0/1:146:60,86:60:2148:86:3087:-233.2,0,-149.405	0/1:128:54,74:54:1927:74:2652:-200.281,0,-135.023	1/1:265:0,265:0:0:265:9449:-848.624,-79.773,0	0/1:10:8,2:8:288:2:72:-3.82317,0,-23.115	1/1:190:0,190:0:0:190:6806:-611.505,-57.1957,0	1/1:89:0,89:0:0:89:3163:-284.328,-26.7917,0	0/1:12:5,7:5:180:7:252:-19.3785,0,-12.5556	0/1:151:63,88:63:2244:88:3164:-239.337,0,-156.524	0/1:12:6,6:6:216:6:216:-16.0385,0,-16.0385	1/1:2:0,2:0:0:2:72:-6.83347,-0.60206,0	0/1:28:10,18:10:360:18:639:-49.3462,0,-24.2999	0/1:93:47,46:47:1676:46:1652:-120.366,0,-122.803	0/1:128:64,64:64:2292:64:2291:-167.256,0,-167.622	1/1:9:0,9:0:0:9:320:-29.1293,-2.70927,0	0/1:184:72,112:72:2563:112:3988:-303.42,0,-175.389	0/1:258:120,138:120:4299:138:4936:-365.965,0,-308.518	0/1:89:46,43:46:1644:43:1544:-112.08,0,-121.106	1/1:115:0,115:0:0:115:4130:-370.775,-34.6185,0	0/1:142:62,79:62:2195:79:2827:-211.604,0,-153.272	0/1:163:81,82:81:2887:82:2924:-214.056,0,-210.606	1/1:51:0,51:0:0:51:1810:-161.918,-15.3525,0	1/1:120:0,120:0:0:120:4287:-385.192,-36.1236,0	0/1:70:41,29:41:1472:29:1039:-72.3775,0,-111.232	0/1:45:21,24:21:756:24:860:-63.9397,0,-54.7884	1/1:131:0,131:0:0:131:4700:-421.561,-39.4349,0	0/1:98:45,53:45:1607:53:1896:-140.641,0,-115.076	0/1:183:94,89:94:3354:89:3179:-230.801,0,-246.558	1/1:209:0,209:0:0:209:7473:-671.653,-62.9153,0	0/1:79:35,43:35:1256:43:1548:-115.301,0,-89.5633	0/1:120:57,63:57:2044:63:2252:-166.184,0,-147.85	1/1:13:0,13:0:0:13:464:-42.0783,-3.91339,0	1/1:159:0,159:0:0:159:5703:-510.951,-47.8638,0	0/1:95:32,63:32:1148:63:2260:-174.837,0,-74.6622	1/1:260:0,260:0:0:260:9281:-834.043,-78.2678,0	0/1:81:47,34:47:1688:34:1224:-84.8559,0,-127.734	1/1:77:0,77:0:0:77:2748:-246.774,-23.1793,0	0/1:94:40,54:40:1431:54:1927:-144.827,0,-100.601	1/1:111:2,109:2:72:109:3901:-342.966,-26.5809,0	0/1:39:21,18:21:756:18:648:-46.8716,0,-56.5946	0/1:77:36,41:36:1296:41:1472:-108.909,0,-93.217	1/1:74:0,74:0:0:74:2644:-237.71,-22.2762,0	1/1:46:0,46:0:0:46:1656:-149.129,-13.8474,0	0/1:123:65,58:65:2332:58:2076:-149.816,0,-172.604	0/1:53:31,22:31:1099:22:788:-55.1286,0,-83.0919	1/1:144:0,144:0:0:144:5159:-463.459,-43.3483,0	1/1:89:1,88:1:36:88:3160:-280.61,-23.1951,0
chr09	4499146	.	A	T	47146.5	PASS	AB=0.518966;ABP=19.5662;AC=60;AF=0.322581;AN=186;AO=2753;CIGAR=1X;DP=8426;DPB=8426;DPRA=1.02826;EPP=5981.07;EPPR=12306.6;GTI=0;LEN=1;MEANALT=1.03175;MQM=59.9422;MQMR=59.9947;NS=93;NUMALT=1;ODDS=0.713767;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98579;QR=203019;RO=5670;RPL=0;RPP=5981.07;RPPR=12306.6;RPR=2753;RUN=1;SAF=0;SAP=5981.07;SAR=2753;SRF=0;SRP=12315.3;SRR=5670;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:15,17:15:516:17:612:-45.7805,0,-37.1305	0/0:150:150,0:150:5367:0:0:0,-45.1545,-483.162	0/0:180:180,0:180:6451:0:0:0,-54.1854,-580.675	0/0:229:229,0:229:8153:0:0:0,-68.9359,-733.789	0/1:53:35,18:35:1256:18:644:-42.336,0,-97.3907	0/1:32:14,18:14:500:18:644:-48.6576,0,-35.7032	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.031	0/1:180:113,67:113:4033:67:2404:-162.431,0,-308.972	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	0/1:131:75,56:75:2688:56:1988:-139.751,0,-202.73	0/1:38:21,17:21:756:17:612:-43.9743,0,-56.9281	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/1:66:39,26:39:1400:26:932:-64.2721,0,-106.372	0/1:42:18,24:18:635:24:858:-64.898,0,-44.8337	0/1:37:16,21:16:572:21:756:-57.2291,0,-40.6753	0/1:32:11,21:11:396:21:752:-58.3733,0,-26.3498	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:230:105,125:105:3745:125:4476:-333.773,0,-268.013	0/1:94:40,54:40:1440:54:1918:-144.597,0,-101.601	0/1:173:53,120:53:1904:120:4299:-335.004,0,-119.56	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/1:92:44,48:44:1575:48:1709:-126.399,0,-114.346	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.425	0/1:338:166,172:166:5951:172:6156:-452.382,0,-433.948	0/0:235:234,1:234:8379:1:36:0,-67.1438,-750.516	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:293:127,166:127:4560:166:5950:-447.402,0,-322.363	0/1:146:67,79:67:2400:79:2819:-209.999,0,-172.306	0/1:116:67,49:67:2404:49:1754:-123.222,0,-181.697	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:110:57,53:57:2048:53:1896:-137.801,0,-151.478	0/1:197:73,124:73:2607:124:4437:-340.125,0,-175.575	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6511	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:120:120,0:120:4316:0:0:0,-36.1236,-388.614	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:157:81,76:81:2899:76:2721:-197.871,0,-213.883	0/1:45:23,22:23:828:22:792:-58.0593,0,-61.2978	0/1:37:20,17:20:711:17:612:-44.2753,0,-53.1775	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:146:146,0:146:5227:0:0:0,-43.9504,-470.567	0/0:195:194,1:194:6946:1:36:0,-55.1026,-621.606	0/1:150:79,71:79:2840:71:2536:-183.335,0,-210.683	0/1:139:64,75:64:2300:75:2696:-201.041,0,-165.418	0/0:181:181,0:181:6478:0:0:0,-54.4864,-583.104	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:140:140,0:140:5032:0:0:0,-42.1442,-453.024	0/0:30:29,1:29:1031:1:36:0,-5.43262,-89.5043	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:129:52,77:52:1868:77:2764:-210.168,0,-129.566	0/1:60:32,28:32:1148:28:1004:-72.6141,0,-85.568	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:54:23,31:23:820:31:1101:-83.1427,0,-57.8669	0/1:90:44,46:44:1576:46:1648:-121.516,0,-115.039	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:249:121,128:121:4352:128:4582:-337.588,0,-316.896	0/1:191:83,108:83:2971:108:3860:-290.097,0,-210.125	0/1:120:66,54:66:2364:54:1940:-138.753,0,-176.895	0/0:101:101,0:101:3615:0:0:0,-30.404,-325.448	0/1:203:93,110:93:3313:110:3935:-293.231,0,-237.279	0/1:105:38,67:38:1368:67:2404:-185.008,0,-91.8127	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/1:72:37,35:37:1328:35:1260:-92.0313,0,-98.1481	0/1:33:17,16:17:612:16:566:-41.3132,0,-45.4794	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:46:21,25:21:756:25:900:-67.4736,0,-54.5198	0/1:84:50,34:50:1788:34:1215:-84.369,0,-135.916	0/0:183:183,0:183:6552:0:0:0,-55.0885,-589.759	0/1:158:75,83:75:2669:83:2984:-221.228,0,-192.892	0/1:100:55,45:55:1976:45:1594:-113.018,0,-148.012	.:.:.:.:.:.:.:.	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.995	0/1:152:61,91:61:2180:91:3260:-247.863,0,-150.704	0/0:244:244,0:244:8741:0:0:0,-73.4513,-786.677	0/1:100:50,49:50:1782:49:1764:-128.882,0,-130.5	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/1:49:27,22:27:964:22:781:-55.8153,0,-72.3264	0/0:79:79,0:79:2831:0:0:0,-23.7814,-255.028	0/1:29:19,10:19:684:10:360:-24.0144,0,-53.1605	0/1:53:29,24:29:1040:24:864:-62.128,0,-77.9598	0/0:39:39,0:39:1389:0:0:0,-11.7402,-125.307	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:44:19,25:19:680:25:896:-67.715,0,-48.2838	0/1:34:15,19:15:532:19:684:-51.6553,0,-37.9781	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/0:76:75,0:75:2679:0:0:0,-22.5772,-240.995
chr09	4582731	.	G	A	108303	PASS	AB=0.459685;ABP=80.924;AC=123;AF=0.668478;AN=184;AO=5437;CIGAR=1X;DP=8425;DPB=8425;DPRA=30.8498;EPP=11791.9;EPPR=6482.69;GTI=2;LEN=1;MEANALT=1;MQM=59.9754;MQMR=60;NS=92;NUMALT=1;ODDS=1.19536;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194107;QR=105723;RO=2988;RPL=5435;RPP=11791.9;RPPR=6482.69;RPR=2;RUN=1;SAF=5437;SAP=11809.3;SAR=0;SRF=2986;SRP=6474.01;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:34,16:34:1190:16:572:-36.7619,0,-92.352	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	1/1:198:0,198:0:0:198:7098:-638.877,-59.6039,0	0/1:32:20,12:20:703:12:432:-29.5882,0,-53.9606	0/1:34:20,14:20:703:14:500:-35.1012,0,-53.3585	1/1:121:0,121:0:0:121:4326:-389.515,-36.4246,0	0/1:188:107,81:107:3741:81:2888:-203.562,0,-280.298	0/1:99:56,43:56:1991:43:1506:-106.029,0,-149.662	0/1:126:61,65:61:2173:65:2332:-172.21,0,-157.905	0/1:63:35,28:35:1224:28:992:-70.6295,0,-91.496	1/1:119:0,119:0:0:119:4241:-381.871,-35.8226,0	0/1:134:56,78:56:1943:78:2773:-209.473,0,-134.803	0/1:88:47,41:47:1651:41:1472:-106.285,0,-122.384	0/1:93:53,40:53:1893:40:1419:-100.011,0,-142.65	0/1:77:35,42:35:1230:42:1500:-112.115,0,-87.8231	0/1:42:24,18:24:852:18:639:-45.195,0,-64.3571	1/1:68:0,68:0:0:68:2435:-219.405,-20.47,0	0/1:31:17,14:17:594:14:504:-36.3662,0,-44.4536	0/1:201:127,74:127:4470:74:2644:-177.7,0,-341.964	0/1:179:96,83:96:3366:83:2957:-212.479,0,-249.274	0/1:83:43,40:43:1535:40:1436:-104.552,0,-113.457	1/1:123:0,123:0:0:123:4397:-395.902,-37.0267,0	0/1:96:64,32:64:2273:32:1148:-74.731,0,-175.932	1/1:84:1,83:1:36:83:2958:-262.853,-21.6882,0	0/1:164:98,66:98:3478:66:2342:-161.669,0,-263.864	1/1:193:1,192:1:32:192:6857:-614,-54.8995,0	0/1:43:18,25:18:640:25:892:-67.6548,0,-44.985	0/1:180:91,89:91:3256:89:3180:-232.237,0,-239.076	0/1:145:70,75:70:2460:75:2667:-196.627,0,-178.005	0/1:81:41,40:41:1448:40:1440:-105.514,0,-106.232	.:.:.:.:.:.:.:.	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	.:.:.:.:.:.:.:.	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:263:145,118:145:5106:118:4231:-301.798,0,-380.515	0/1:103:59,44:59:2116:44:1552:-108.927,0,-159.703	0/1:60:25,35:25:887:35:1260:-95.6437,0,-62.0863	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:104:0,104:0:0:104:3712:-334.281,-31.3071,0	0/1:30:15,15:15:540:15:531:-39.091,0,-39.9056	0/1:100:47,53:47:1656:53:1883:-139.645,0,-119.222	0/1:82:41,41:41:1441:41:1462:-107.192,0,-105.299	0/1:86:44,42:44:1535:42:1495:-108.955,0,-112.55	1/1:99:0,99:0:0:99:3536:-318.449,-29.802,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:118:0,118:0:0:118:4232:-381.059,-35.5215,0	0/1:103:39,64:39:1369:64:2304:-176.614,0,-92.5004	0/1:122:73,49:73:2620:49:1760:-121.956,0,-199.322	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:63:0,63:0:0:63:2249:-202.671,-18.9649,0	1/1:45:0,45:0:0:45:1569:-141.365,-13.5464,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:113:71,42:71:2528:42:1512:-102.358,0,-193.756	0/1:47:24,23:24:832:23:828:-60.6957,0,-61.0456	0/1:7:4,3:4:135:3:108:-7.96796,0,-10.3753	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:97:42,55:42:1491:55:1932:-144.954,0,-105.284	0/1:90:43,47:43:1515:47:1684:-124.754,0,-109.55	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:150:79,71:79:2828:71:2535:-183.246,0,-209.604	0/1:136:73,63:73:2620:63:2256:-162.363,0,-195.107	0/1:101:58,43:58:2063:43:1540:-108.489,0,-155.537	1/1:53:0,53:0:0:53:1891:-170.468,-15.9546,0	0/1:206:97,109:97:3422:109:3893:-288.551,0,-246.182	0/1:166:129,37:129:4605:37:1328:-69.8513,0,-364.642	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:66:0,66:0:0:66:2340:-210.859,-19.868,0	0/1:56:24,32:24:836:32:1129:-85.0591,0,-58.697	0/1:13:5,8:5:171:8:288:-22.354,0,-11.8121	1/1:89:0,89:0:0:89:3191:-287.412,-26.7917,0	0/1:96:47,49:47:1676:49:1747:-128.615,0,-122.228	0/1:148:85,63:85:2992:63:2256:-158.75,0,-224.958	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:158:70,88:70:2477:88:3136:-234.904,0,-175.62	0/1:98:60,38:60:2136:38:1351:-92.3887,0,-163.007	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	0/1:139:84,55:84:2957:55:1959:-134.742,0,-224.519	1/1:209:1,208:1:36:208:7423:-664.52,-59.317,0	0/1:85:32,53:32:1148:53:1908:-146.41,0,-78.0423	1/1:115:0,115:0:0:115:4120:-370.984,-34.6185,0	0/1:51:22,29:22:788:29:1044:-78.9223,0,-55.8923	1/1:182:0,182:0:0:182:6486:-583.827,-54.7875,0	0/1:32:18,14:18:644:14:492:-34.9788,0,-48.6576	0/1:113:59,54:59:2077:54:1913:-138.159,0,-153.183	1/1:118:0,118:0:0:118:4174:-375.653,-35.5215,0	1/1:56:0,56:0:0:56:2000:-180.273,-16.8577,0	0/1:112:59,53:59:2077:53:1890:-136.662,0,-153.484	0/1:95:76,19:76:2693:19:680:-32.9313,0,-214.016	1/1:48:0,48:0:0:48:1715:-154.634,-14.4494,0	1/1:153:0,153:0:0:153:5423:-488.199,-46.0576,0
chr09	4614430	.	T	G	49228.9	PASS	AB=0.521224;ABP=19.5093;AC=61;AF=0.327957;AN=186;AO=2205;CIGAR=1X;DP=6307;DPB=6307;DPRA=1.14605;EPP=4791.11;EPPR=8880.01;GTI=0;LEN=1;MEANALT=1.01538;MQM=59.5424;MQMR=59.9805;NS=93;NUMALT=1;ODDS=1.31899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77337;QR=146393;RO=4100;RPL=1011;RPP=35.9901;RPPR=187.374;RPR=1194;RUN=1;SAF=1011;SAP=35.9901;SAR=1194;SRF=1758;SRP=183.643;SRR=2342;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:10,12:10:356:12:432:-32.5916,0,-25.7586	0/0:62:61,1:61:2175:1:36:0,-15.0656,-192.418	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:13:4,9:4:144:9:320:-25.2266,0,-9.40023	0/1:13:9,4:9:324:4:129:-8.01148,0,-25.5925	0/0:60:57,2:57:2031:2:72:0,-11.2839,-176.225	0/1:76:31,45:31:1116:45:1576:-119.163,0,-77.8734	0/1:66:27,39:27:972:39:1375:-104.159,0,-67.9218	0/1:58:29,29:29:1044:29:1025:-75.101,0,-76.8151	0/1:109:55,54:55:1936:54:1872:-135.937,0,-141.702	0/0:145:145,0:145:5195:0:0:0,-43.6493,-467.688	0/1:136:61,75:61:2179:75:2558:-189.366,0,-155.435	0/1:148:75,73:75:2679:73:2561:-186.158,0,-196.802	0/1:136:75,61:75:2676:61:2120:-150.127,0,-200.146	0/1:110:45,65:45:1611:65:2264:-170.901,0,-112.166	0/1:93:46,47:46:1640:47:1624:-118.228,0,-119.893	0/0:64:64,0:64:2254:0:0:0,-19.2659,-203.12	0/1:73:39,34:39:1400:34:1157:-82.4401,0,-104.324	0/1:68:29,39:29:1032:39:1379:-103.935,0,-72.7234	0/1:94:36,58:36:1292:58:2054:-156.824,0,-88.2869	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.845	0/1:101:53,48:53:1893:48:1720:-124.674,0,-140.242	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:94:39,55:39:1400:55:1951:-147.568,0,-98.0024	0/0:89:89,0:89:3174:0:0:0,-26.7917,-285.814	0/1:60:30,30:30:1067:30:1055:-77.1936,0,-78.2794	0/1:60:26,34:26:928:34:1200:-90.2402,0,-65.7765	0/1:32:17,15:17:608:15:540:-38.1931,0,-45.4191	0/1:104:58,46:58:2072:46:1618:-114.229,0,-155.444	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:4,3:4:140:3:99:-7.12937,0,-10.8374	.:.:.:.:.:.:.:.	0/1:7:4,3:4:144:3:108:-7.96702,0,-11.2064	0/1:15:5,10:5:176:10:350:-27.3021,0,-11.6696	0/1:261:129,132:129:4623:132:4638:-338.945,0,-337.663	0/1:23:12,11:12:428:11:392:-28.6964,0,-31.9351	0/1:109:53,56:53:1899:56:1981:-145.509,0,-138.375	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:65:32,33:32:1135:33:1153:-84.5021,0,-82.8911	0/1:75:44,31:44:1580:31:1082:-75.1088,0,-119.914	0/1:106:54,52:54:1927:52:1840:-133.966,0,-141.797	0/1:108:61,47:61:2196:47:1646:-115.908,0,-165.394	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:46:44,2:44:1568:2:72:0,-7.01161,-134.576	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.978	0/1:27:10,17:10:356:17:608:-46.9242,0,-24.2534	0/1:58:29,29:29:1044:29:1014:-74.0818,0,-76.8151	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:57:57,0:57:2043:0:0:0,-17.1587,-183.824	0/0:19:18,0:18:640:0:0:0,-5.41854,-57.5697	0/1:8:5,3:5:180:3:93:-6.26846,0,-14.1438	0/1:73:39,34:39:1377:34:1173:-83.894,0,-102.251	0/1:20:10,10:10:360:10:352:-25.9976,0,-26.7237	0/1:8:1,7:1:36:7:243:-19.7992,0,-1.19003	0/1:11:8,3:8:288:3:93:-5.3654,0,-22.9561	0/1:69:36,33:36:1288:33:1171:-84.8982,0,-95.4525	0/1:194:102,92:102:3643:92:3212:-230.903,0,-269.675	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:45:21,24:21:756:24:839:-62.2739,0,-54.8209	0/1:51:18,33:18:640:33:1175:-90.7035,0,-42.5768	0/1:24:13,11:13:464:11:388:-28.0326,0,-34.8728	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/1:71:37,34:37:1315:34:1195:-86.4805,0,-97.2779	0/1:53:20,33:20:720:33:1163:-89.0215,0,-49.1742	0/0:107:107,0:107:3807:0:0:0,-32.2102,-342.829	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:134:53,81:53:1904:81:2856:-216.938,0,-131.3	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/0:31:31,0:31:1099:0:0:0,-9.33193,-99.2195	0/1:50:23,27:23:828:27:951:-70.8434,0,-59.7926	0/1:84:37,47:37:1309:47:1662:-124.574,0,-92.823	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:36:19,17:19:675:17:594:-42.8746,0,-50.2399	0/1:53:32,21:32:1133:21:752:-52.0114,0,-86.3221	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:48:26,22:26:928:22:758:-54.079,0,-69.3888	0/0:91:91,0:91:3246:0:0:0,-27.3937,-292.332	0/1:96:45,51:45:1607:51:1820:-135.112,0,-116.02	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511	0/1:133:52,81:52:1836:81:2797:-211.923,0,-125.481	0/0:199:197,2:197:7024:2:72:0,-53.0682,-625.384	0/1:41:19,22:19:680:22:779:-58.0726,0,-49.1869	0/1:99:43,56:43:1532:56:1953:-146.151,0,-108.371	0/0:120:120,0:120:4244:0:0:0,-36.1236,-382.142	0/0:91:91,0:91:3231:0:0:0,-27.3937,-291.013	0/1:162:82,80:82:2929:80:2817:-205.004,0,-215.076	0/1:97:33,64:33:1180:64:2236:-172.3,0,-77.3081	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:178:178,0:178:6368:0:0:0,-53.5833,-573.211
chr09	4616122	.	GGCA	CGCG,GGCG	111466	PASS	AB=0.54255,0.450284;ABP=55.6761,74.9101;AC=125,59;AF=0.679348,0.320652;AN=184;AO=3920,1514;CIGAR=1X2M1X,3M1X;DP=5473;DPB=5473;DPRA=0,0.910719;EPP=8515.18,3281.94;EPPR=5.18177;GTI=3;LEN=4,1;MEANALT=2,2.26562;MQM=59.8074,59.961;MQMR=60;NS=92;NUMALT=2;ODDS=1.53927;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=136600,53794;QR=36;RO=1;RPL=3920,1513;RPP=8515.18,3281.94;RPPR=5.18177;RPR=0,1;RUN=1,1;SAF=3920,1514;SAP=8515.18,3290.62;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,23,15:0:0:23,15:792,520:-106.936,-42.6104,-35.6867,-64.6715,0,-60.1561	1/1:59:0,57,0:0:0:57,0:2019,0:-181.729,-17.1587,0,-181.729,-17.1587,-181.729	1/1:95:0,93,2:0:0:93,2:3247,72:-292.088,-27.9958,0,-286.213,-21.7611,-285.611	1/1:147:0,146,0:0:0:146,0:5087,0:-457.625,-43.9504,0,-457.625,-43.9504,-457.625	1/2:41:0,27,14:0:0:27,14:956,504:-119.354,-41.4837,-33.3559,-78.2279,0,-74.0135	1/2:26:0,21,5:0:0:21,5:741,180:-75.3801,-15.0469,-8.72528,-60.6917,0,-59.1865	1/1:62:0,59,1:0:0:59,1:2059,36:-185.198,-17.7608,0,-182.26,-14.8234,-181.959	1/2:48:0,25,22:0:0:25,22:879,751:-132.605,-61.0519,-53.5262,-71.6713,0,-65.0487	1/2:47:0,35,12:0:0:35,12:1208,432:-133.735,-35.6088,-25.0728,-98.4821,0,-94.8698	1/2:37:0,14,23:0:0:14,23:488,816:-106.523,-66.838,-62.6236,-40.0358,0,-33.1121	1/2:25:0,20,5:0:0:20,5:685,180:-70.6382,-15.0469,-9.02631,-55.9477,0,-54.4425	1/1:98:0,95,0:0:0:95,0:3229,0:-290.475,-28.5979,0,-290.475,-28.5979,-290.475	1/2:54:0,36,18:0:0:36,18:1245,639:-153.493,-52.4197,-41.5826,-101.425,0,-96.0066	1/2:38:1,17,20:1:36:17,20:599,692:-101.751,-53.2807,-51.1013,-45.8236,0,-42.7408	1/2:45:0,25,19:0:0:25,19:866,654:-123.543,-53.1584,-45.6326,-70.4263,0,-64.7068	1/2:36:0,19,17:0:0:19,17:655,599:-102.322,-49.1206,-43.401,-53.5504,0,-48.4329	1/2:41:0,23,18:0:0:23,18:805,625:-116.651,-51.154,-44.2303,-65.8453,0,-60.4267	1/1:23:0,22,0:0:0:22,0:759,0:-68.3252,-6.62266,0,-68.3252,-6.62266,-68.3252	1/2:10:0,6,4:0:0:6,4:199,140:-27.8267,-11.7405,-9.93428,-16.4288,0,-15.2246	1/2:75:0,51,22:0:0:51,22:1783,792:-209.648,-64.6232,-49.2707,-145.022,0,-138.399	1/2:99:0,61,37:0:0:61,37:2066,1324:-275.453,-107.964,-89.6014,-167.48,0,-156.342	1/2:59:0,26,33:0:0:26,33:917,1175:-170.788,-96.123,-88.2962,-75.019,0,-65.085	1/1:71:0,71,0:0:0:71,0:2507,0:-225.885,-21.3731,0,-225.885,-21.3731,-225.885	1/2:36:0,22,14:0:0:22,14:782,504:-105.207,-41.4837,-34.861,-64.0809,0,-59.8665	1/1:15:0,15,0:0:0:15,0:533,0:-48.3038,-4.51545,0,-48.3038,-4.51545,-48.3038	1/2:141:0,72,69:0:0:72,69:2550,2463:-408.875,-201.153,-179.479,-208.077,0,-187.306	1/1:93:0,93,0:0:0:93,0:3229,0:-290.834,-27.9958,0,-290.834,-27.9958,-290.834	1/2:34:0,22,12:0:0:22,12:751,424:-95.8163,-34.8841,-28.2614,-61.2813,0,-57.6689	1/2:184:0,91,93:0:0:91,93:3185,3303:-528.596,-269.492,-242.098,-259.457,0,-231.461	1/2:99:0,60,33:0:0:60,33:2092,1184:-266.67,-96.5775,-78.5157,-170.091,0,-160.157	1/2:66:0,37,29:0:0:37,29:1294,1044:-190.62,-85.5449,-74.4068,-105.43,0,-96.6999	1/1:11:0,11,0:0:0:11,0:363,0:-32.9877,-3.31133,0,-32.9877,-3.31133,-32.9877	1/2:15:0,8,7:0:0:8,7:288,252:-44.4211,-20.9217,-18.5135,-23.8592,0,-21.752	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:5:0,4,1:0:0:4,1:134,32:-13.7613,-2.89828,-1.69416,-11.1859,0,-10.8849	1/2:6:0,4,2:0:0:4,2:139,72:-17.5271,-6.23466,-5.03054,-11.6481,0,-11.046	1/2:132:0,74,56:0:0:74,56:2563,1994:-370.788,-162.514,-140.238,-208.266,0,-191.408	1/2:75:0,38,37:0:0:38,37:1328,1324:-216.351,-108.324,-96.8848,-108.38,0,-97.2424	1/2:33:0,18,15:0:0:18,15:632,514:-93.5061,-42.0664,-36.6479,-51.786,0,-47.2706	.:.:.:.:.:.:.:.	1/1:91:0,89,0:0:0:89,0:3105,0:-279.343,-26.7917,0,-279.343,-26.7917,-279.343	1/2:24:0,12,12:0:0:12,12:419,428:-69.3251,-35.2464,-31.6341,-34.4314,0,-30.8191	1/2:120:0,63,57:0:0:63,57:2215,2022:-345.388,-165.093,-146.128,-180.648,0,-163.49	1/2:45:0,23,22:0:0:23,22:796,788:-129.302,-64.6221,-57.6984,-65.0317,0,-58.4091	1/2:38:0,22,16:0:0:22,16:760,558:-107.478,-45.73,-39.1073,-62.0956,0,-57.2791	1/1:63:0,62,1:0:0:62,1:2157,24:-194.106,-18.6639,0,-192.249,-16.565,-191.948	1/1:56:0,56,0:0:0:56,0:1949,0:-175.68,-16.8577,0,-175.68,-16.8577,-175.68	1/1:88:0,87,0:0:0:87,0:3023,0:-272.005,-26.1896,0,-272.005,-26.1896,-272.005	1/2:39:0,23,16:0:0:23,16:799,576:-112.118,-47.3585,-40.4348,-65.1135,0,-60.297	1/2:90:0,34,53:0:0:34,53:1158,1889:-247.938,-154,-143.765,-93.9797,0,-78.0251	1/1:91:0,90,0:0:0:90,0:3135,0:-282.019,-27.0927,0,-282.019,-27.0927,-282.019	1/2:5:0,4,1:0:0:4,1:142,36:-14.8346,-3.29724,-2.09312,-11.896,0,-11.595	1/1:58:0,57,1:0:0:57,1:2006,26:-180.548,-17.1587,0,-178.511,-14.8599,-178.21	1/1:34:0,33,0:0:0:33,0:1138,0:-102.421,-9.93399,0,-102.421,-9.93399,-102.421	1/2:18:0,6,12:0:0:6,12:215,423:-52.3279,-34.7927,-32.9865,-17.8914,0,-14.2791	1/2:109:0,69,40:0:0:69,40:2408,1432:-312.889,-117.136,-96.3653,-196.107,0,-184.066	1/2:28:0,12,16:0:0:12,16:423,563:-80.6238,-46.1827,-42.5703,-34.7932,0,-29.9767	.:.:.:.:.:.:.:.	1/2:9:0,8,1:0:0:8,1:287,36:-26.7058,-3.29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chr09	4990886	.	A	G	26947.7	PASS	AB=0.486823;ABP=8.10365;AC=63;AF=0.33871;AN=186;AO=1649;CIGAR=1X;DP=5627;DPB=5627;DPRA=0.790273;EPP=3583.77;EPPR=8623.76;GTI=4;LEN=1;MEANALT=1.11475;MQM=55.1243;MQMR=59.9725;NS=93;NUMALT=1;ODDS=0.49779;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58912;QR=142241;RO=3970;RPL=1649;RPP=3583.77;RPPR=8623.76;RPR=0;RUN=1;SAF=0;SAP=3583.77;SAR=1649;SRF=0;SRP=8623.76;SRR=3970;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:5,2:5:180:2:72:-4.7174,0,-14.4449	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.035	0/0:139:139,0:139:4972:0:0:0,-41.8432,-447.628	0/0:170:170,0:170:6104:0:0:0,-51.1751,-549.459	0/1:20:7,13:7:252:13:464:-35.9894,0,-17.0084	0/1:30:24,6:24:852:6:216:-10.7294,0,-67.9695	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:58:22,36:22:777:36:1276:-97.5729,0,-52.7906	0/1:90:44,46:44:1568:46:1622:-118.824,0,-114.318	0/1:77:42,35:42:1508:35:1256:-89.934,0,-112.835	0/1:32:20,12:20:720:12:428:-29.1273,0,-55.4958	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:75:46,28:46:1644:28:1000:-67.4916,0,-125.613	0/1:30:15,14:15:540:14:500:-35.9935,0,-39.8468	0/1:59:41,18:41:1468:18:648:-40.8439,0,-114.655	0/1:59:29,30:29:1044:30:1076:-79.2002,0,-76.514	0/1:33:20,13:20:720:13:464:-31.9339,0,-55.1948	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:22:10,12:10:360:12:432:-32.4547,0,-26.1216	0/1:106:53,52:53:1892:52:1851:-134.471,0,-138.591	0/1:104:62,42:62:2224:42:1504:-104.036,0,-169.117	0/1:53:9,44:9:324:44:1576:-126.129,0,-13.5513	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:20:8,12:8:288:12:432:-33.1496,0,-20.2468	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.159	0/1:163:83,80:83:2976:80:2852:-207.532,0,-219.004	0/0:177:177,0:177:6360:0:0:0,-53.2823,-572.33	0/1:24:13,11:13:468:11:396:-28.7047,0,-35.2349	0/1:174:95,79:95:3404:79:2830:-202.348,0,-254.195	0/1:58:25,33:25:881:33:1180:-88.9043,0,-62.1461	0/1:68:40,28:40:1416:28:1000:-69.778,0,-107.267	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:4,1:4:144:1:32:-1.69212,0,-11.8085	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:5,6:5:180:6:212:-16.0938,0,-13.2407	0/1:3:2,1:2:72:1:36:-2.69148,0,-5.93363	0/1:126:57,69:57:2052:69:2460:-183.542,0,-147.022	0/1:61:37,23:37:1324:23:824:-55.9676,0,-100.612	0/1:48:15,33:15:540:33:1180:-91.5801,0,-34.4871	0/1:5:1,4:1:36:4:144:-11.7896,0,-2.09312	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:23:11,12:11:396:12:428:-31.6303,0,-29.0591	0/1:70:41,29:41:1468:29:1032:-71.8282,0,-111.344	0/1:48:27,21:27:960:21:752:-53.4248,0,-72.2668	0/1:45:23,22:23:820:22:788:-57.6033,0,-60.5762	0/0:79:79,0:79:2809:0:0:0,-23.7814,-253.049	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/0:105:105,0:105:3776:0:0:0,-31.6081,-340.037	0/1:68:37,30:37:1328:30:1080:-76.8328,0,-99.2937	0/1:93:52,41:52:1868:41:1476:-104.906,0,-140.403	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	1/1:4:0,4:0:0:4:144:-13.2999,-1.20412,0	0/1:97:39,58:39:1404:58:2072:-156.324,0,-97.4594	0/1:10:4,5:4:140:5:180:-13.469,0,-9.87768	0/1:4:3,1:3:108:1:36:-2.39315,0,-8.87105	0/1:15:4,11:4:144:11:392:-31.0951,0,-8.79817	0/1:68:31,37:31:1116:37:1320:-98.2297,0,-80.2817	0/1:71:40,31:40:1440:31:1108:-78.5857,0,-108.48	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	0/1:132:74,58:74:2652:58:2072:-146.738,0,-199.19	0/1:67:35,32:35:1248:32:1133:-81.9424,0,-92.4559	0/1:50:29,21:29:1036:21:741:-51.8701,0,-78.5024	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:103:45,58:45:1593:58:2072:-155.404,0,-112.652	0/1:119:37,81:37:1332:81:2900:-224.259,0,-84.301	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:22:13,9:13:468:9:316:-22.1466,0,-35.837	0/1:10:5,5:5:176:5:180:-13.5298,0,-13.1747	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.653	0/1:96:58,38:58:2061:38:1368:-93.9312,0,-156.861	0/1:77:37,40:37:1328:40:1431:-105.727,0,-96.6429	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/1:70:39,31:39:1396:31:1108:-78.6534,0,-104.867	0/1:46:22,24:22:792:24:864:-63.9488,0,-57.7583	.:.:.:.:.:.:.:.	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:88:47,41:47:1676:41:1464:-104.956,0,-124.637	0/0:144:144,0:144:5156:0:0:0,-43.3483,-464.177	0/1:43:20,23:20:716:23:820:-61.1271,0,-51.8234	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:24:16,8:16:572:8:284:-18.6385,0,-44.5887	0/0:94:94,0:94:3384:0:0:0,-28.2968,-304.774	0/1:21:12,9:12:428:9:320:-22.7957,0,-32.5372	0/1:71:46,25:46:1644:25:896:-59.4418,0,-126.875	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:50:33,17:33:1180:17:600:-39.2074,0,-91.4565	0/1:55:12,43:12:432:43:1536:-121.752,0,-22.6645	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.722	0/0:79:78,0:78:2804:0:0:0,-23.4803,-252.239
chr09	5488210	.	C	G	341037	PASS	AB=0.48166;ABP=36.8605;AC=128;AF=0.680851;AN=188;AO=13115;CIGAR=1X;DP=19152;DPB=19152;DPRA=0;EPP=28481.9;EPPR=13051.4;GTI=0;LEN=1;MEANALT=1.24468;MQM=59.7092;MQMR=59.9837;NS=94;NUMALT=1;ODDS=16.9249;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=463134;QR=211400;RO=6009;RPL=6662;RPP=10.2426;RPPR=37.0691;RPR=6453;RUN=1;SAF=6662;SAP=10.2426;SAR=6453;SRF=3158;SRP=37.0691;SRR=2851;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:84:41,43:41:1446:43:1510:-110.896,0,-105.144	1/1:242:0,242:0:0:242:8602:-774.114,-72.8493,0	1/1:261:0,261:0:0:261:9256:-832.954,-78.5688,0	1/1:362:1,361:1:36:361:12777:-1146.11,-105.375,0	0/1:153:82,71:82:2857:71:2527:-181.613,0,-211.311	0/1:147:77,69:77:2708:69:2427:-174.355,0,-199.652	1/1:304:0,304:0:0:304:10704:-963.1,-91.5131,0	0/1:358:191,166:191:6715:166:5839:-417.387,0,-496.603	0/1:256:146,110:146:5131:110:3861:-270.475,0,-384.874	0/1:260:128,132:128:4472:132:4673:-342.457,0,-324.386	0/1:159:82,77:82:2882:77:2710:-196.249,0,-211.752	1/1:195:2,193:2:72:193:6825:-607.406,-51.8641,0	0/1:140:66,74:66:2327:74:2603:-192.351,0,-167.546	0/1:185:99,86:99:3413:86:3027:-216.785,0,-251.695	0/1:148:78,70:78:2754:70:2466:-177.315,0,-203.55	0/1:133:64,69:64:2233:69:2428:-178.736,0,-161.196	0/1:145:78,66:78:2678:66:2322:-165.522,0,-197.557	1/1:97:0,97:0:0:97:3438:-309.618,-29.1999,0	0/1:79:42,36:42:1457:36:1258:-89.6727,0,-107.58	0/1:347:181,165:181:6359:165:5812:-418.656,0,-467.889	0/1:380:198,182:198:6987:182:6422:-463.617,0,-514.505	0/1:200:132,68:132:4659:68:2409:-156.86,0,-359.27	1/1:238:1,237:1:36:237:8397:-752.108,-68.0469,0	0/1:143:73,69:73:2600:69:2443:-177.015,0,-191.143	1/1:207:0,207:0:0:207:7318:-658.632,-62.3132,0	0/1:558:270,285:270:9503:285:10049:-736.896,0,-687.807	1/1:612:2,608:2:72:608:21423:-1920.5,-177.151,0	0/1:79:38,41:38:1324:41:1451:-107.098,0,-95.6754	0/1:475:273,201:273:9635:201:7106:-496.516,0,-724.116	0/1:245:113,132:113:4025:132:4677:-347.313,0,-288.682	0/1:293:166,127:166:5854:127:4461:-313.437,0,-438.773	1/1:24:0,23:0:0:23:821:-73.8462,-6.92369,0	0/1:41:15,26:15:536:26:919:-70.6793,0,-36.2326	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:33:8,25:8:288:25:869:-67.4825,0,-16.3334	0/1:423:227,196:227:7988:196:6873:-491.308,0,-591.621	0/1:235:127,108:127:4480:108:3829:-274.057,0,-332.632	0/1:144:70,74:70:2461:74:2622:-192.877,0,-178.396	0/1:14:7,7:7:244:7:252:-18.8145,0,-18.085	1/1:242:0,242:0:0:242:8530:-766.806,-72.8493,0	0/1:67:31,36:31:1095:36:1249:-92.4098,0,-78.6901	0/1:238:109,128:109:3823:128:4548:-337.779,0,-272.565	0/1:180:86,94:86:2994:94:3310:-243.884,0,-215.506	0/1:123:71,52:71:2489:52:1844:-129.21,0,-187.234	1/1:360:2,357:2:72:357:12666:-1132.9,-101.593,0	1/1:229:3,225:3:104:225:7987:-708.994,-59.2546,0	1/1:369:1,368:1:36:368:12982:-1164.22,-107.482,0	0/1:294:139,155:139:4863:155:5470:-403.91,0,-349.322	0/1:319:155,164:155:5454:164:5829:-428.683,0,-394.967	1/1:317:0,316:0:0:316:11137:-1001.72,-95.1255,0	0/1:26:15,11:15:536:11:387:-27.3392,0,-40.748	1/1:231:0,231:0:0:231:8140:-732.493,-69.5379,0	1/1:135:0,135:0:0:135:4814:-433.29,-40.6391,0	0/1:21:15,6:15:519:6:179:-10.0825,0,-40.7151	0/1:286:135,151:135:4707:151:5343:-394.874,0,-337.698	0/1:142:69,73:69:2445:73:2587:-190.298,0,-177.558	0/1:22:15,7:15:517:7:252:-16.4063,0,-40.2319	0/1:33:16,17:16:568:17:586:-43.1279,0,-41.5179	0/1:233:114,117:114:4027:117:4116:-300.599,0,-292.723	0/1:212:107,105:107:3741:105:3693:-268.739,0,-273.076	1/1:15:0,15:0:0:15:523:-47.3985,-4.51545,0	0/1:310:170,140:170:6044:140:4973:-354.375,0,-450.747	0/1:303:150,153:150:5314:153:5371:-392.31,0,-387.185	0/1:175:84,91:84:2958:91:3229:-238.133,0,-213.772	1/1:154:1,153:1:36:153:5372:-480.008,-42.7603,0	0/1:353:168,185:168:5972:185:6567:-484.727,0,-431.281	0/1:270:171,99:171:6080:99:3485:-232.571,0,-466.027	1/1:98:0,98:0:0:98:3485:-313.844,-29.5009,0	1/1:172:0,172:0:0:172:6097:-548.16,-51.7772,0	0/1:147:73,74:73:2545:74:2599:-189.86,0,-185.048	0/1:53:28,25:28:968:25:892:-64.6451,0,-71.4741	1/1:214:0,214:0:0:214:7552:-679.71,-64.4204,0	0/1:193:98,95:98:3465:95:3341:-242.717,0,-253.965	1/1:454:1,453:1:36:453:16015:-1437.3,-133.069,0	1/1:288:0,287:0:0:287:10122:-910.551,-86.3956,0	0/1:236:108,128:108:3768:128:4545:-338.068,0,-268.28	0/1:227:102,124:102:3566:124:4394:-327.223,0,-252.748	1/1:21:0,21:0:0:21:741:-66.9939,-6.32163,0	1/1:233:0,233:0:0:233:8284:-745.484,-70.14,0	0/1:255:133,122:133:4662:122:4330:-313.105,0,-342.794	1/1:432:0,431:0:0:431:15153:-1363.22,-129.744,0	0/1:184:109,75:109:3868:75:2642:-182.498,0,-292.84	1/1:99:0,99:0:0:99:3486:-313.325,-29.802,0	0/1:166:82,84:82:2870:84:2963:-216.93,0,-208.566	1/1:315:3,312:3:108:312:11035:-982.875,-84.7493,0	0/1:77:39,38:39:1351:38:1347:-98.3502,0,-98.7053	0/1:144:74,70:74:2587:70:2447:-177.119,0,-189.73	1/1:158:0,156:0:0:156:5487:-493.513,-46.9607,0	1/1:107:0,106:0:0:106:3739:-336.313,-31.9092,0	0/1:236:112,124:112:3962:124:4367:-322.012,0,-285.729	0/1:191:132,59:132:4658:59:2071:-129.125,0,-361.892	1/1:165:0,164:0:0:164:5782:-519.919,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chr09	5488219	.	T	C	127866	PASS	AB=0.478443;ABP=25.1987;AC=128;AF=0.680851;AN=188;AO=6422;CIGAR=1X;DP=9303;DPB=9303;DPRA=0;EPP=13930.8;EPPR=6235.15;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.4581;MQMR=59.9739;NS=94;NUMALT=1;ODDS=1.02981;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225849;QR=102364;RO=2878;RPL=2;RPP=13930.8;RPPR=6235.15;RPR=6420;RUN=1;SAF=0;SAP=13948.2;SAR=6422;SRF=0;SRP=6252.51;SRR=2878;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:35,30:35:1240:30:1067:-76.7661,0,-92.3375	1/1:122:0,122:0:0:122:4295:-386.667,-36.7257,0	1/1:132:0,132:0:0:132:4662:-419.69,-39.736,0	1/1:165:1,164:1:36:164:5782:-516.86,-46.0717,0	0/1:66:34,32:34:1208:32:1140:-83.032,0,-89.1581	0/1:88:49,39:49:1743:39:1375:-97.5445,0,-130.66	1/1:122:0,122:0:0:122:4321:-389.042,-36.7257,0	0/1:137:68,69:68:2428:69:2432:-177.787,0,-177.535	0/1:102:48,54:48:1708:54:1887:-139.295,0,-123.301	0/1:102:43,59:43:1528:59:2095:-158.106,0,-107.108	0/1:107:53,54:53:1899:54:1869:-136.241,0,-138.977	1/1:111:1,110:1:36:110:3806:-339.054,-29.8161,0	0/1:80:38,42:38:1364:42:1461:-107.678,0,-98.9783	0/1:95:44,51:44:1563:51:1745:-128.688,0,-112.363	0/1:84:50,34:50:1788:34:1203:-83.2264,0,-135.916	0/1:72:32,40:32:1095:40:1391:-103.805,0,-77.1777	0/1:45:28,17:28:1004:17:596:-40.405,0,-77.1295	1/1:35:0,35:0:0:35:1218:-109.903,-10.5361,0	0/1:46:24,22:24:852:22:767:-55.4939,0,-63.153	0/1:159:74,85:74:2635:85:3006:-222.895,0,-189.533	0/1:133:79,54:79:2804:54:1884:-129.668,0,-212.564	0/1:107:74,33:74:2636:33:1171:-73.4865,0,-205.277	1/1:171:1,170:1:36:170:5987:-535.305,-47.8779,0	0/1:80:42,38:42:1492:38:1356:-98.2535,0,-110.492	1/1:144:0,142:0:0:142:5043:-453.706,-42.7463,0	0/1:187:99,88:99:3527:88:3113:-224.101,0,-261.348	1/1:339:2,337:2:68:337:11852:-1059.82,-95.5915,0	0/1:34:18,16:18:639:16:548:-39.4001,0,-47.6032	0/1:217:127,90:127:4524:90:3188:-221.819,0,-342.006	0/1:142:68,74:68:2436:74:2603:-191.689,0,-176.749	0/1:188:115,73:115:4087:73:2545:-172.693,0,-311.425	1/1:13:0,13:0:0:13:460:-41.7289,-3.91339,0	0/1:13:6,7:6:216:7:252:-19.1109,0,-15.8771	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:17:7,10:7:248:10:356:-26.4784,0,-17.5467	0/1:199:111,88:111:3935:88:3113:-220.487,0,-294.438	0/1:84:42,42:42:1493:42:1492:-109.279,0,-109.376	0/1:74:44,30:44:1532:30:1080:-75.237,0,-115.893	0/1:4:1,3:1:36:3:100:-8.12632,0,-2.39415	1/1:98:0,98:0:0:98:3456:-309.96,-29.5009,0	0/1:28:12,16:12:432:16:563:-42.44,0,-30.7924	0/1:121:56,65:56:1999:65:2269:-168.045,0,-143.758	0/1:69:34,35:34:1211:35:1220:-89.319,0,-88.5244	0/1:60:33,27:33:1179:27:941:-66.9341,0,-88.3554	1/1:176:1,175:1:36:175:6197:-554.214,-49.383,0	1/1:112:0,112:0:0:112:3977:-357.401,-33.7154,0	1/1:140:1,139:1:36:139:4849:-432.292,-38.5459,0	0/1:113:55,58:55:1952:58:2020:-148.042,0,-141.94	0/1:138:64,74:64:2288:74:2623:-194.764,0,-164.64	1/1:163:0,163:0:0:163:5699:-512.868,-49.0679,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:103:0,103:0:0:103:3593:-323.554,-31.0061,0	1/1:117:0,117:0:0:117:4122:-371.06,-35.2205,0	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/1:148:59,89:59:2096:89:3175:-241.389,0,-144.353	0/1:72:40,32:40:1424:32:1132:-80.5135,0,-106.783	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:6:2,4:2:64:4:144:-11.5065,0,-4.27251	0/1:170:78,92:78:2796:92:3264:-242.461,0,-199.768	0/1:114:48,66:48:1708:66:2326:-175.238,0,-119.688	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/1:150:80,70:80:2872:70:2492:-179.356,0,-213.562	0/1:166:81,85:81:2883:85:3000:-220.255,0,-209.736	0/1:97:51,46:51:1832:46:1635:-118.22,0,-135.961	1/1:68:0,68:0:0:68:2398:-216.071,-20.47,0	0/1:159:74,85:74:2633:85:3006:-222.881,0,-189.334	0/1:202:130,72:130:4621:72:2544:-168.372,0,-355.247	1/1:82:0,82:0:0:82:2854:-257.025,-24.6845,0	1/1:102:0,102:0:0:102:3600:-323.98,-30.7051,0	0/1:60:37,23:37:1309:23:808:-54.9761,0,-100.048	0/1:34:21,13:21:752:13:447:-30.3217,0,-57.7712	1/1:121:0,120:0:0:120:4221:-379.736,-36.1236,0	0/1:105:54,51:54:1903:51:1774:-128.183,0,-139.939	1/1:229:0,229:0:0:229:8122:-729.893,-68.9359,0	1/1:137:0,137:0:0:137:4827:-434.577,-41.2411,0	0/1:60:30,30:30:1064:30:1037:-75.5408,0,-78.0099	0/1:105:40,65:40:1424:65:2289:-174.652,0,-96.8412	1/1:3:0,3:0:0:3:108:-10.057,-0.90309,0	1/1:98:0,98:0:0:98:3465:-311.922,-29.5009,0	0/1:106:64,42:64:2249:42:1482:-101.756,0,-170.764	1/1:181:1,180:1:36:180:6307:-563.915,-50.8882,0	0/1:80:50,30:50:1788:30:1012:-67.2392,0,-137.12	1/1:56:0,56:0:0:56:1931:-174.056,-16.8577,0	0/1:51:24,27:24:851:27:938:-69.3769,0,-61.5569	1/1:130:2,128:2:72:128:4486:-397.038,-32.2972,0	0/1:27:18,9:18:618:9:306:-19.7408,0,-47.813	0/1:65:33,32:33:1159:32:1097:-79.4478,0,-85.0489	1/1:82:0,82:0:0:82:2799:-252.034,-24.6845,0	1/1:73:1,72:1:36:72:2551:-226.179,-18.3769,0	0/1:146:72,74:72:2563:74:2573:-187.723,0,-186.97	0/1:92:58,34:58:2066:34:1172:-78.0464,0,-158.515	1/1:72:0,72:0:0:72:2544:-228.985,-21.6742,0	1/1:96:0,96:0:0:96:3377:-304.081,-28.8989,0
chr09	5488638	.	A	G,T	187886	PASS	AB=0.530256,0.469744;ABP=41.2475,41.2475;AC=128,60;AF=0.680851,0.319149;AN=188;AO=6506,2266;CIGAR=1X,1X;DP=8772;DPB=8772;DPRA=31.4301,0.742554;EPP=13879.8,4845.7;EPPR=0;GTI=4;LEN=1,1;MEANALT=1.65591,1.98387;MQM=59.9573,59.9612;MQMR=0;NS=94;NUMALT=2;ODDS=0.974514;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=230637,80996;QR=0;RO=0;RPL=6477,2257;RPP=13879.8,4845.7;RPPR=0;RPR=29,9;RUN=1,1;SAF=0,0;SAP=14130.6,4923.57;SAR=6506,2266;SRF=0;SRP=0;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,22,13:0:0:22,13:775,468:-101.638,-38.5463,-31.9236,-63.4485,0,-59.5351	1/1:107:0,107,0:0:0:107,0:3828,0:-344.717,-32.2102,0,-344.717,-32.2102,-344.717	1/1:220:0,220,0:0:0:220,0:7810,0:-702.92,-66.2266,0,-702.92,-66.2266,-702.92	1/1:400:0,400,0:0:0:400,0:14153,0:-1273.53,-120.412,0,-1273.53,-120.412,-1273.53	1/2:56:0,26,30:0:0:26,30:932,1076:-164.136,-88.122,-80.2952,-76.3721,0,-67.3412	1/2:24:0,16,8:0:0:16,8:572,284:-70.1364,-23.4951,-18.6786,-46.9969,0,-44.5887	1/1:74:0,73,1:0:0:73,1:2568,36:-231.009,-21.9752,0,-228.072,-18.6779,-227.771	1/2:60:0,31,29:0:0:31,29:1086,1036:-173.186,-84.824,-75.4921,-88.7155,0,-79.9856	1/2:53:0,25,28:0:0:25,28:896,1004:-155.322,-82.247,-74.7213,-73.4337,0,-65.0049	1/2:58:0,27,31:0:0:27,31:960,1116:-169.651,-91.4198,-83.292,-78.5883,0,-69.2564	1/2:23:0,14,9:0:0:14,9:502,320:-67.3793,-26.4331,-22.2187,-41.3028,0,-38.5935	1/1:109:0,109,0:0:0:109,0:3847,0:-346.428,-32.8123,0,-346.428,-32.8123,-346.428	1/2:81:0,40,41:0:0:40,41:1427,1476:-237.12,-120.793,-108.752,-116.686,0,-104.343	1/2:33:0,14,19:0:0:14,19:489,657:-93.5096,-53.7317,-49.5173,-40.1255,0,-34.4059	1/2:75:0,30,45:0:0:30,45:1062,1616:-218.682,-132.179,-123.148,-86.8591,0,-73.3127	1/2:54:0,31,23:0:0:31,23:1100,824:-157.18,-67.5596,-58.2277,-89.9768,0,-83.0531	1/2:21:0,5,16:0:0:5,16:174,568:-60.7823,-46.6354,-45.1302,-14.4965,0,-9.67997	1/1:43:0,43,0:0:0:43,0:1518,0:-136.912,-12.9443,0,-136.912,-12.9443,-136.912	1/2:18:0,12,6:0:0:12,6:419,216:-52.0584,-17.9843,-14.372,-34.4303,0,-32.6241	1/2:278:0,137,141:0:0:137,141:4844,5027:-804.584,-410.118,-368.877,-394.821,0,-352.376	1/2:158:0,95,63:0:0:95,63:3362,2243:-457.012,-183.168,-154.57,-274.198,0,-255.233	1/2:140:0,68,72:0:0:68,72:2406,2574:-406.206,-210.235,-189.765,-196.326,0,-174.652	1/1:126:0,126,0:0:0:126,0:4484,0:-403.73,-37.9298,0,-403.73,-37.9298,-403.73	1/2:44:0,24,20:0:0:24,20:846,708:-126.905,-58.025,-50.8003,-69.2331,0,-63.2125	1/1:79:0,79,0:0:0:79,0:2793,0:-251.609,-23.7814,0,-251.609,-23.7814,-251.609	1/2:204:0,122,82:0:0:122,82:4319,2921:-590.246,-238.44,-201.714,-352.162,0,-327.478	1/1:177:0,177,0:0:0:177,0:6275,0:-564.848,-53.2823,0,-564.848,-53.2823,-564.848	1/2:46:0,25,21:0:0:25,21:900,752:-135.121,-61.6846,-54.1589,-73.7953,0,-67.4736	1/2:244:0,127,117:0:0:127,117:4527,4172:-709.453,-340.442,-302.211,-369.368,0,-334.148	1/2:188:0,120,68:0:0:120,68:4223,2426:-541.9,-198.125,-162.001,-344.13,0,-323.66	1/2:85:0,40,45:0:0:40,45:1440,1612:-249.321,-131.824,-119.783,-117.857,0,-104.31	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:15:0,8,7:0:0:8,7:275,252:-43.2447,-20.9217,-18.5135,-22.6752,0,-20.568	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:13:0,6,7:0:0:6,7:216,252:-38.5463,-20.9217,-19.1156,-17.9843,0,-15.8771	1/2:192:0,87,105:0:0:87,105:3090,3771:-559.762,-307.98,-281.79,-252.139,0,-220.53	1/2:107:0,57,50:0:0:57,50:2031,1788:-311.697,-146.151,-128.992,-165.903,0,-150.852	1/2:35:0,20,15:0:0:20,15:716,540:-102.809,-44.4211,-38.4005,-58.7471,0,-54.2317	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:201:0,201,0:0:0:201,0:7149,0:-643.472,-60.507,0,-643.472,-60.507,-643.472	1/2:24:0,12,12:0:0:12,12:428,432:-70.4971,-35.6088,-31.9965,-35.2464,0,-31.6341	1/2:189:0,101,88:0:0:101,88:3594,3164:-551.328,-258.493,-228.089,-293.193,0,-266.702	1/2:51:0,33,18:0:0:33,18:1175,644:-148.638,-52.8721,-42.9381,-96.123,0,-90.7044	1/2:48:0,22,26:0:0:22,26:777,932:-139.645,-76.3721,-69.7494,-63.6286,0,-55.8018	1/1:138:0,138,0:0:0:138,0:4899,0:-441.063,-41.5421,0,-441.063,-41.5421,-441.063	1/1:122:0,121,1:0:0:121,1:4283,36:-385.29,-36.4246,0,-382.353,-33.1274,-382.052	1/1:196:0,196,0:0:0:196,0:6963,0:-626.467,-59.0019,0,-626.467,-59.0019,-626.467	1/2:99:0,70,29:0:0:70,29:2454,1033:-284.242,-84.5526,-63.4805,-200.044,0,-191.314	1/2:127:0,66,61:0:0:66,61:2337,2187:-369.096,-178.732,-158.864,-190.72,0,-172.358	1/1:105:0,105,0:0:0:105,0:3756,0:-338.239,-31.6082,0,-338.239,-31.6082,-338.239	1/2:9:0,6,3:0:0:6,3:212,108:-26.4331,-9.17208,-7.3659,-17.6186,0,-16.7155	1/1:171:0,171,0:0:0:171,0:6035,0:-543.229,-51.4761,0,-543.229,-51.4761,-543.229	1/1:78:0,78,0:0:0:78,0:2750,0:-247.743,-23.4803,0,-247.743,-23.4803,-247.743	1/2:6:0,4,2:0:0:4,2:140,72:-17.6186,-6.23466,-5.03054,-11.7405,0,-11.1384	1/2:216:0,112,104:0:0:112,104:4000,3716:-629.452,-303.334,-269.619,-326.475,0,-295.168	1/2:25:0,19,6:0:0:19,6:667,216:-72.261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chr09	5807816	.	AGAAA	TGAAA,TGAAC	146630	PASS	AB=0.49988,0.496291;ABP=3.01082,3.50965;AC=127,61;AF=0.675532,0.324468;AN=188;AO=4987,2083;CIGAR=1X4M,1X3M1X;DP=7104;DPB=7104;DPRA=76.3763,0.858695;EPP=10832.1,4526.19;EPPR=18.2106;GTI=2;LEN=1,5;MEANALT=1.90323,2.18462;MQM=59.9501,44.337;MQMR=60;NS=94;NUMALT=2;ODDS=2.27321;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=178779,71378;QR=213;RO=7;RPL=0,0;RPP=10832.1,4526.19;RPPR=18.2106;RPR=4987,2083;RUN=1,1;SAF=4987,2083;SAP=10832.1,4526.19;SAR=0,0;SRF=7;SRP=18.2106;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:60:0,28,28:0:0:28,28:1000,971:-158.414,-76.8811,-68.4522,-81.5245,0,-73.0957	1/1:90:0,90,0:0:0:90,0:3232,0:-291.095,-27.0927,0,-291.095,-27.0927,-291.095	1/1:123:0,123,0:0:0:123,0:4420,0:-397.97,-37.0267,0,-397.97,-37.0267,-397.97	1/1:136:0,133,3:0:0:133,3:4760,108:-428.202,-40.037,0,-419.497,-30.976,-418.594	1/2:15:0,9,6:0:0:9,6:324,206:-43.042,-16.59,-13.8808,-26.7966,0,-24.9904	1/2:35:0,19,16:0:0:19,16:684,551:-99.4496,-43.6247,-37.9051,-56.1708,0,-51.3543	1/1:60:0,60,0:0:0:60,0:2132,0:-192.149,-18.0618,0,-192.149,-18.0618,-192.149	1/2:88:0,45,43:0:0:45,43:1608,1487:-248.625,-117.507,-103.961,-131.464,0,-118.519	1/2:42:0,25,16:0:0:25,16:896,558:-116.785,-43.9248,-36.3991,-72.8469,0,-68.0305	1/2:69:0,25,44:0:0:25,44:900,1517:-193.882,-120.438,-112.913,-73.7953,0,-60.5499	1/2:88:0,43,45:0:0:43,45:1524,1525:-246.256,-122.091,-109.147,-124.509,0,-110.962	1/1:117:0,115,1:0:0:115,1:4132,33:-371.717,-34.6185,0,-369.049,-31.9652,-368.748	1/2:85:0,41,43:0:0:41,43:1472,1462:-235.039,-114.951,-102.609,-120.074,0,-107.13	1/2:86:0,47,37:0:0:47,37:1684,1279:-238.305,-100.953,-86.8049,-137.342,0,-126.204	1/2:74:0,30,44:0:0:30,44:1061,1501:-206.269,-119.846,-110.816,-86.7685,0,-73.5231	1/2:73:0,37,36:0:0:37,36:1332,1210:-204.89,-96.1904,-85.0523,-109.044,0,-98.2072	1/2:53:0,27,26:0:0:27,26:972,882:-149.196,-69.8708,-61.743,-79.6701,0,-71.8433	1/1:39:0,38,1:0:0:38,1:1360,36:-122.35,-11.4391,0,-119.499,-8.23747,-119.198	1/2:29:0,14,15:0:0:14,15:500,506:-80.6448,-39.8652,-35.6508,-41.1218,0,-36.6063	1/2:150:0,76,74:0:0:76,74:2728,2517:-423.573,-201.035,-178.157,-222.884,0,-200.608	1/2:120:0,62,58:0:0:62,58:2212,1995:-339.095,-159.031,-140.368,-180.41,0,-162.95	1/2:31:0,10,21:0:0:10,21:360,727:-88.1507,-58.771,-55.7607,-29.734,0,-23.4124	1/1:40:0,40,0:0:0:40,0:1436,0:-129.538,-12.0412,0,-129.538,-12.0412,-129.538	1/2:33:0,6,27:0:0:6,27:216,931:-92.0034,-74.3749,-72.5688,-17.9843,0,-9.85652	1/1:64:0,64,0:0:0:64,0:2292,0:-206.541,-19.2659,0,-206.541,-19.2659,-206.541	1/2:172:0,99,73:0:0:99,73:3548,2443:-486.067,-196.684,-166.882,-289.726,0,-267.751	1/1:237:0,235,0:0:0:235,0:8412,0:-756.764,-70.7421,0,-756.764,-70.7421,-756.764	1/2:28:0,17,11:0:0:17,11:612,379:-80.3121,-30.362,-25.2445,-50.2959,0,-46.9846	1/2:179:0,107,72:0:0:107,72:3844,2474:-512.844,-199.517,-167.307,-313.675,0,-292.001	1/2:103:0,53,50:0:0:53,50:1908,1747:-295.329,-139.637,-123.682,-156.043,0,-140.991	1/2:44:0,25,19:0:0:25,19:888,645:-124.328,-51.9583,-44.4326,-72.7133,0,-66.9937	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:19:0,4,15:0:0:4,15:144,508:-52.2149,-40.4591,-39.255,-12.1095,0,-7.59405	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:3:0,1,2:0:0:1,2:36,66:-8.49971,-5.55028,-5.24925,-3.29724,0,-2.69518	1/2:21:0,3,18:0:0:3,18:108,615:-57.8692,-49.0533,-48.1502,-9.17208,0,-3.75354	1/2:183:0,87,94:0:0:87,94:3124,3235:-514.841,-259.995,-233.805,-254.836,0,-226.539	1/2:87:1,50,35:1:31:50,35:1788,1214:-240.109,-94.6077,-82.0438,-143.328,0,-135.279	1/2:50:0,30,20:0:0:30,20:1080,684:-141.917,-53.7768,-44.7459,-88.4823,0,-82.4617	2/2:1:0,0,1:0:0:0,1:0,27:-2.69144,-2.69144,-2.69144,-0.30103,-0.30103,0	1/1:100:0,100,0:0:0:100,0:3588,0:-323.126,-30.103,0,-323.126,-30.103,-323.126	1/2:24:0,11,13:0:0:11,13:392,447:-68.0528,-36.0924,-32.7811,-32.3087,0,-28.3953	1/2:94:0,49,45:0:0:49,45:1752,1513:-263.425,-120.555,-105.804,-143.214,0,-129.667	1/2:57:0,29,27:0:0:29,27:1031,930:-158.395,-74.6409,-65.911,-83.7993,0,-75.6714	1/2:63:0,44,18:0:0:44,18:1584,624:-179.248,-49.9891,-36.7438,-129.259,0,-123.841	1/1:92:0,92,0:0:0:92,0:3288,0:-296.132,-27.6948,0,-296.132,-27.6948,-296.132	1/1:85:0,85,0:0:0:85,0:3044,0:-274.19,-25.5876,0,-274.19,-25.5876,-274.19	1/1:101:0,99,2:0:0:99,2:3552,69:-319.546,-29.802,0,-313.994,-23.9085,-313.392	1/2:77:0,38,39:0:0:38,39:1368,1326:-218.09,-106.457,-95.0176,-111.982,0,-100.242	1/2:112:0,63,49:0:0:63,49:2268,1727:-323.685,-138.62,-119.655,-185.417,0,-170.667	1/1:114:0,114,0:0:0:114,0:4092,0:-368.465,-34.3174,0,-368.465,-34.3174,-368.465	1/2:6:0,3,3:0:0:3,3:108,90:-16.259,-7.41533,-6.51224,-9.17208,0,-8.26899	1/1:102:0,101,0:0:0:101,0:3628,0:-326.364,-30.404,0,-326.364,-30.404,-326.364	1/1:66:0,66,0:0:0:66,0:2360,0:-212.659,-19.868,0,-212.659,-19.868,-212.659	1/2:13:0,11,2:0:0:11,2:392,70:-37.8594,-5.89483,-2.5835,-32.3087,0,-31.7067	1/2:97:0,32,65:0:0:32,65:1133,2270:-274.051,-181.757,-172.124,-92.6437,0,-73.0767	1/2:15:0,11,4:0:0:11,4: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chr09	5807846	.	A	G	40986.9	PASS	AB=0.484348;ABP=11.7789;AC=61;AF=0.324468;AN=188;AO=2004;CIGAR=1X;DP=7074;DPB=7074;DPRA=0.845013;EPP=1248.23;EPPR=17.6775;GTI=3;LEN=1;MEANALT=1.03125;MQM=44.5724;MQMR=59.959;NS=94;NUMALT=1;ODDS=1.50819;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71350;QR=181655;RO=5067;RPL=466;RPP=1248.23;RPPR=17.6775;RPR=1538;RUN=1;SAF=2004;SAP=4354.64;SAR=0;SRF=5067;SRP=11005.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:35,27:35:1260:27:960:-65.8256,0,-95.037	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.978	0/0:122:122,0:122:4357:0:0:0,-36.7257,-392.304	0/0:143:140,3:140:5009:3:108:0,-33.0832,-440.991	0/1:15:9,6:9:324:6:212:-14.1252,0,-24.9904	0/1:35:20,15:20:716:15:540:-37.1007,0,-54.2317	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:84:44,40:44:1572:40:1428:-99.6444,0,-116.485	0/1:41:25,16:25:900:16:568:-37.2796,0,-68.9788	0/1:68:27,41:27:972:41:1456:-107.338,0,-67.3279	0/1:86:44,42:44:1584:42:1504:-108.13,0,-116.963	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/1:88:44,44:44:1584:44:1567:-110.421,0,-116.361	0/1:84:49,35:49:1760:35:1243:-84.8234,0,-133.397	0/1:72:30,42:30:1080:42:1480:-109.083,0,-75.8391	0/1:69:37,32:37:1332:32:1136:-79.2076,0,-99.4113	0/1:50:27,22:27:964:22:788:-54.2918,0,-71.9758	0/0:42:41,1:41:1464:1:36:0,-9.14056,-128.553	0/1:28:14,14:14:504:14:496:-34.887,0,-37.2693	0/1:145:75,70:75:2692:70:2493:-177.032,0,-198.875	0/1:119:64,55:64:2296:55:1939:-135.812,0,-170.301	0/1:30:10,20:10:360:20:712:-54.4873,0,-23.7134	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:33:8,25:8:288:25:891:-69.1841,0,-16.3334	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:166:99,67:99:3548:67:2400:-164.812,0,-269.557	0/0:237:237,0:237:8500:0:0:0,-71.3441,-764.998	0/1:28:17,11:17:612:11:388:-26.3188,0,-46.9846	0/1:180:107,73:107:3817:73:2610:-179.001,0,-289.272	0/1:104:56,48:56:2012:48:1705:-119.677,0,-150.046	0/1:44:26,18:26:928:18:636:-43.3239,0,-70.5929	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:19:4,15:4:140:15:532:-41.2471,0,-7.22501	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:1,4:1:36:4:144:-11.2288,0,-2.09312	0/1:23:3,20:3:108:20:704:-55.1389,0,-3.15148	0/1:178:88,90:88:3164:90:3190:-230.787,0,-231.4	0/1:84:53,31:53:1904:31:1093:-71.7707,0,-146.351	0/1:50:31,19:31:1108:19:674:-43.4422,0,-84.9779	1/1:1:0,1:0:0:1:32:-3.17344,-0.30103,0	0/0:98:98,0:98:3509:0:0:0,-29.5009,-316.018	0/1:24:11,13:11:396:13:464:-34.218,0,-28.758	0/1:94:51,43:51:1809:43:1544:-107.48,0,-134.793	0/1:55:30,25:30:1068:25:900:-63.5726,0,-78.6835	0/1:65:46,19:46:1648:19:660:-39.3716,0,-129.024	0/0:91:90,0:90:3232:0:0:0,-27.0927,-290.733	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:102:100,2:100:3596:2:72:0,-23.9437,-317.084	0/1:76:38,38:38:1349:38:1353:-97.4627,0,-98.83	0/1:113:64,49:64:2300:49:1748:-121.094,0,-173.244	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/1:4:3,1:3:108:1:36:-2.3545,0,-8.87105	0/0:100:100,0:100:3569:0:0:0,-30.103,-321.417	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:14:12,2:12:432:2:72:-2.44071,0,-35.0068	0/1:97:33,64:33:1184:64:2284:-172.871,0,-77.6684	0/1:15:11,4:11:396:4:135:-7.8522,0,-31.4673	0/1:6:5,1:5:180:1:36:-1.76725,0,-14.7459	0/1:25:11,14:11:396:14:496:-37.1881,0,-28.457	0/1:62:24,38:24:856:38:1348:-99.6378,0,-58.6963	0/1:110:56,54:56:2001:54:1920:-137.933,0,-147.248	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:108:64,44:64:2296:44:1567:-107.583,0,-174.39	0/1:148:73,75:73:2620:75:2684:-193.771,0,-191.495	0/1:65:40,25:40:1432:25:888:-59.1515,0,-109.611	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/1:97:59,38:59:2105:38:1368:-92.5583,0,-160.518	0/1:157:69,88:69:2476:88:3139:-232.022,0,-175.832	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/1:62:32,30:32:1152:30:1063:-76.2232,0,-85.3263	0/1:20:8,12:8:288:12:432:-32.6975,0,-20.2468	0/0:197:197,0:197:7038:0:0:0,-59.3029,-633.48	0/1:73:37,36:37:1332:36:1274:-88.9354,0,-98.2072	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.344	0/0:105:105,0:105:3753:0:0:0,-31.6081,-337.969	0/1:74:35,39:35:1256:39:1392:-100.107,0,-91.0691	0/1:98:40,58:40:1440:58:2076:-151.159,0,-100.397	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/1:77:30,47:30:1072:47:1680:-124.36,0,-73.6131	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.577	0/1:66:32,34:32:1152:34:1224:-88.8925,0,-84.0596	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.628	0/1:51:24,27:24:849:27:972:-70.5142,0,-61.3753	0/0:148:148,0:148:5320:0:0:0,-44.5524,-478.931	0/1:18:10,7:10:360:7:248:-16.7612,0,-27.4062	0/1:68:34,34:34:1208:34:1212:-86.281,0,-88.556	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:130:78,52:78:2804:52:1818:-121.838,0,-213.437	0/1:59:16,43:16:572:43:1544:-117.978,0,-34.0527	0/0:141:140,1:140:5036:1:36:0,-38.8487,-449.297	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.319
chr09	5837892	.	A	C	44024.6	PASS	AB=0.484327;ABP=14.786;AC=60;AF=0.319149;AN=188;AO=2678;CIGAR=1X;DP=9118;DPB=9118;DPRA=0.940436;EPP=5818.21;EPPR=13974.3;GTI=1;LEN=1;MEANALT=1.04688;MQM=59.6848;MQMR=59.6326;NS=94;NUMALT=1;ODDS=2.05001;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95208;QR=230680;RO=6434;RPL=0;RPP=5818.21;RPPR=13974.3;RPR=2678;RUN=1;SAF=2678;SAP=5818.21;SAR=0;SRF=6434;SRP=13974.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:71:42,29:42:1504:29:1044:-72.9017,0,-114.27	0/0:75:74,0:74:2652:0:0:0,-22.2762,-238.533	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.673	0/0:159:159,0:159:5704:0:0:0,-47.8638,-513.455	0/1:51:33,18:33:1188:18:631:-41.7621,0,-91.4475	0/1:52:13,39:13:453:39:1370:-107.927,0,-25.4379	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.476	0/1:134:57,77:57:2044:77:2730:-205.589,0,-143.666	0/1:122:62,60:62:2224:60:2123:-154.601,0,-163.698	0/1:89:36,53:36:1296:53:1875:-142.234,0,-90.1499	0/1:58:17,41:17:612:41:1464:-114.576,0,-37.9537	0/0:125:124,1:124:4460:1:32:0,-34.4294,-398.289	0/1:82:44,38:44:1572:38:1364:-98.3518,0,-117.079	0/1:95:54,41:54:1940:41:1472:-104.141,0,-146.269	0/1:80:41,39:41:1460:39:1388:-101.134,0,-107.595	0/1:79:33,46:33:1188:46:1648:-124.823,0,-83.4472	0/1:50:31,19:31:1104:19:680:-46.4695,0,-84.6176	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.156	0/1:35:13,22:13:468:22:792:-61.0696,0,-31.9236	0/1:124:56,68:56:2012:68:2428:-181.441,0,-144.01	0/1:180:112,68:112:4020:68:2431:-164.84,0,-307.759	0/1:119:42,77:42:1500:77:2726:-209.76,0,-99.4711	0/0:148:146,2:146:5220:2:72:0,-37.7157,-462.941	0/1:111:67,44:67:2404:44:1572:-108.353,0,-183.191	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.684	0/1:275:153,122:153:5481:122:4352:-308.443,0,-410.529	0/0:277:277,0:277:9948:0:0:0,-83.3853,-894.346	0/1:44:22,22:22:788:22:785:-57.7266,0,-57.9995	0/1:223:119,103:119:4260:103:3643:-260.936,0,-316.434	0/1:119:80,39:80:2864:39:1404:-90.7806,0,-222.112	0/1:100:59,41:59:2116:41:1447:-100.422,0,-160.441	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.935	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0203	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:248:127,121:127:4547:121:4316:-313.96,0,-333.68	0/1:122:65,57:65:2332:57:2012:-144.59,0,-173.395	0/1:66:32,34:32:1148:34:1208:-89.1581,0,-83.7537	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.519	0/1:46:32,14:32:1148:14:500:-31.4888,0,-89.7778	0/1:227:125,102:125:4465:102:3622:-257.649,0,-333.649	0/1:78:34,44:34:1220:44:1576:-118.651,0,-86.6241	0/1:85:42,43:42:1508:43:1522:-111.684,0,-110.425	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.053	0/0:132:131,1:131:4704:1:36:0,-36.1377,-418.484	0/0:125:125,0:125:4442:0:0:0,-37.6287,-399.506	0/1:128:73,55:73:2620:55:1963:-138.406,0,-197.504	0/1:105:58,47:58:2088:47:1655:-117.629,0,-156.579	0/0:151:151,0:151:5408:0:0:0,-45.4555,-486.846	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:137:135,0:135:4848:0:0:0,-40.639,-436.137	0/0:75:75,0:75:2681:0:0:0,-22.5772,-241.523	0/1:11:7,4:7:252:4:144:-10.0019,0,-19.6721	0/1:103:61,42:61:2172:42:1491:-103.435,0,-164.729	0/1:62:41,21:41:1472:21:743:-48.5292,0,-114.104	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:89:62,27:62:2228:27:964:-60.2805,0,-173.933	0/1:119:55,64:55:1976:64:2284:-169.992,0,-142.264	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:135:71,64:71:2548:64:2274:-164.28,0,-188.928	0/1:160:65,94:65:2340:94:3312:-250.057,0,-162.633	0/1:82:45,37:45:1620:37:1294:-91.984,0,-121.368	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.554	0/1:147:73,74:73:2608:74:2623:-191.977,0,-190.675	0/1:100:35,65:35:1256:65:2306:-177.694,0,-83.2399	0/0:44:44,0:44:1575:0:0:0,-13.2453,-141.985	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.232	0/1:44:22,22:22:784:22:784:-57.6386,0,-57.6377	0/1:13:8,5:8:280:5:176:-12.2716,0,-21.6235	0/0:128:128,0:128:4587:0:0:0,-38.5318,-412.548	0/1:111:67,44:67:2400:44:1568:-107.981,0,-182.817	0/0:176:176,0:176:6307:0:0:0,-52.9813,-567.06	0/0:166:166,0:166:5968:0:0:0,-49.971,-537.088	0/1:155:93,61:93:3328:61:2170:-148.577,0,-252.978	0/1:179:98,81:98:3520:81:2907:-207.76,0,-263.108	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9201	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.695	0/1:110:57,53:57:2048:53:1874:-135.561,0,-151.469	0/0:169:169,0:169:6049:0:0:0,-50.8741,-544.369	0/1:56:29,27:29:1044:27:972:-70.9369,0,-77.4171	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.68	0/1:56:28,28:28:1004:28:987:-72.2696,0,-73.8158	0/0:161:160,1:160:5744:1:36:0,-44.8676,-513.457	0/1:25:9,16:9:324:16:567:-43.8268,0,-21.9767	0/1:92:40,52:40:1436:52:1848:-138.897,0,-101.843	0/0:101:101,0:101:3615:0:0:0,-30.404,-325.476	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.763	0/1:120:60,60:60:2160:60:2144:-157.1,0,-158.373	0/1:113:30,83:30:1072:83:2929:-229.808,0,-62.7714	0/0:105:105,0:105:3767:0:0:0,-31.6081,-339.076	0/0:149:149,0:149:5360:0:0:0,-44.8535,-482.388
chr09	5837896	.	G	A	132817	PASS	AB=0.513771;ABP=12.161;AC=128;AF=0.680851;AN=188;AO=6462;CIGAR=1X;DP=9168;DPB=9168;DPRA=0;EPP=14017.7;EPPR=5859.48;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.6252;MQMR=59.7131;NS=94;NUMALT=1;ODDS=1.34046;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=231806;QR=96769;RO=2705;RPL=2;RPP=14017.7;RPPR=5859.48;RPR=6460;RUN=1;SAF=6462;SAP=14035.1;SAR=0;SRF=2705;SRP=5876.84;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:30,42:30:1080:42:1508:-114.324,0,-75.8345	1/1:75:0,75:0:0:75:2684:-241.764,-22.5773,0	1/1:121:0,121:0:0:121:4344:-390.91,-36.4246,0	1/1:156:0,156:0:0:156:5605:-504.552,-46.9607,0	0/1:52:19,33:19:684:33:1188:-91.1464,0,-46.2368	0/1:53:40,13:40:1424:13:468:-26.4968,0,-112.483	1/1:100:0,100:0:0:100:3592:-323.475,-30.103,0	0/1:135:77,58:77:2764:58:2050:-144.106,0,-208.354	0/1:122:60,62:60:2140:62:2228:-164.058,0,-156.129	0/1:90:53,37:53:1888:37:1327:-92.5325,0,-143.103	0/1:57:41,16:41:1472:16:576:-35.0163,0,-115.595	1/1:127:1,126:1:36:126:4528:-404.021,-34.6325,0	0/1:86:40,46:40:1431:46:1645:-122.448,0,-103.173	0/1:93:39,54:39:1392:54:1944:-147.231,0,-97.5456	0/1:79:38,41:38:1360:41:1476:-109.319,0,-98.9169	0/1:79:46,33:46:1652:33:1188:-83.4472,0,-125.183	0/1:53:21,32:21:741:32:1152:-88.034,0,-51.0486	1/1:58:0,58:0:0:58:2076:-186.804,-17.4597,0	0/1:35:22,13:22:792:13:459:-31.108,0,-61.0696	0/1:126:69,57:69:2467:57:2052:-147.006,0,-184.349	0/1:177:67,110:67:2400:110:3944:-301.828,0,-162.959	0/1:122:81,41:81:2882:41:1476:-96.4096,0,-222.889	1/1:147:2,145:2:72:145:5195:-460.818,-37.4147,0	0/1:112:45,67:45:1616:67:2412:-183.61,0,-112.01	1/1:92:0,92:0:0:92:3296:-296.839,-27.6948,0	0/1:274:121,153:121:4340:153:5496:-412.18,0,-307.662	1/1:284:0,284:0:0:284:10178:-914.856,-85.4925,0	0/1:43:19,24:19:675:24:857:-64.5048,0,-48.1327	0/1:225:104,120:104:3731:120:4299:-319.289,0,-268.199	0/1:118:39,79:39:1396:79:2825:-218.903,0,-90.3166	0/1:102:43,59:43:1540:59:2115:-159.851,0,-108.184	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:12:7,5:7:252:5:180:-12.935,0,-19.4166	1/1:2:0,2:0:0:2:67:-6.3601,-0.60206,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:253:124,129:124:4432:129:4626:-339.848,0,-322.884	0/1:123:59,64:59:2111:64:2296:-169.859,0,-152.802	0/1:67:35,32:35:1260:32:1148:-83.4527,0,-93.5365	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:97:0,97:0:0:97:3488:-314.061,-29.1999,0	0/1:46:14,32:14:489:32:1152:-90.1382,0,-30.4915	0/1:233:106,127:106:3787:127:4560:-340.388,0,-270.045	0/1:81:46,35:46:1648:35:1260:-89.2136,0,-124.225	0/1:86:42,44:42:1508:44:1584:-116.958,0,-110.126	1/1:122:0,122:0:0:122:4368:-393.008,-36.7257,0	1/1:134:1,133:1:36:133:4748:-423.136,-36.7397,0	1/1:127:0,127:0:0:127:4544:-409.107,-38.2308,0	0/1:128:57,71:57:2044:71:2556:-191.745,0,-145.693	0/1:104:47,57:47:1684:57:2040:-152.564,0,-120.54	1/1:150:0,150:0:0:150:5400:-486.123,-45.1545,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:139:0,139:0:0:139:4994:-449.572,-41.8432,0	1/1:74:0,74:0:0:74:2664:-239.995,-22.2762,0	0/1:12:4,8:4:144:8:288:-22.6096,0,-9.70085	0/1:103:41,62:41:1472:62:2228:-169.769,0,-101.735	0/1:63:22,41:22:792:41:1476:-114.163,0,-52.6384	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:88:27,61:27:968:61:2180:-169.917,0,-60.9421	0/1:118:63,55:63:2264:55:1980:-142.925,0,-168.494	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:134:65,69:65:2328:69:2468:-182.032,0,-169.439	0/1:159:94,65:94:3342:65:2328:-161.913,0,-253.113	0/1:83:38,45:38:1356:45:1620:-121.067,0,-97.2637	1/1:100:0,100:0:0:100:3569:-321.402,-30.103,0	0/1:142:69,73:69:2467:73:2625:-193.709,0,-179.502	0/1:101:69,32:69:2472:32:1152:-73.5838,0,-192.328	1/1:45:0,45:0:0:45:1620:-145.811,-13.5464,0	1/1:67:0,67:0:0:67:2404:-216.592,-20.169,0	0/1:43:22,21:22:783:21:756:-55.422,0,-57.8487	0/1:13:5,8:5:176:8:288:-22.3516,0,-12.2716	1/1:125:0,125:0:0:125:4492:-403.764,-37.6288,0	0/1:113:46,67:46:1656:67:2393:-181.583,0,-115.296	1/1:174:0,174:0:0:174:6253:-562.605,-52.3792,0	1/1:167:0,167:0:0:167:6004:-540.327,-50.272,0	0/1:156:61,95:61:2146:95:3380:-257.382,0,-146.403	0/1:178:80,98:80:2864:98:3491:-260.812,0,-204.351	1/1:15:0,15:0:0:15:540:-48.9201,-4.51545,0	1/1:89:0,89:0:0:89:3196:-287.692,-26.7917,0	0/1:115:54,61:54:1913:61:2188:-162.558,0,-137.789	1/1:171:0,171:0:0:171:6144:-552.915,-51.4761,0	0/1:56:27,29:27:964:29:1040:-77.0567,0,-70.2178	1/1:96:0,96:0:0:96:3452:-310.876,-28.8989,0	0/1:55:27,28:27:972:28:999:-73.6655,0,-71.2222	1/1:160:1,159:1:36:159:5720:-511.297,-44.5665,0	0/1:27:17,10:17:612:10:360:-24.6131,0,-47.2774	0/1:94:54,40:54:1936:40:1436:-101.241,0,-146.207	1/1:100:0,100:0:0:100:3573:-321.718,-30.103,0	1/1:36:0,36:0:0:36:1296:-116.935,-10.8371,0	0/1:121:60,61:60:2156:61:2179:-159.917,0,-157.882	0/1:115:85,30:85:3044:30:1076:-62.5297,0,-239.549	1/1:105:0,105:0:0:105:3758:-338.334,-31.6082,0	1/1:150:0,150:0:0:150:5388:-484.912,-45.1545,0
chr09	5837937	.	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chr09	5884593	.	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chr09	5986165	.	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chr09	6108130	.	T	A,C	113282	PASS	AB=0.51454,0.48457;ABP=9.19867,9.97963;AC=126,60;AF=0.677419,0.322581;AN=186;AO=3706,1635;CIGAR=1X,1X;DP=5344;DPB=5344;DPRA=29.0326,0.985389;EPP=8015.78,3553.37;EPPR=7.35324;GTI=4;LEN=1,1;MEANALT=1.6413,2;MQM=59.9919,59.9963;MQMR=60;NS=93;NUMALT=2;ODDS=0.748824;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=132689,58464;QR=72;RO=2;RPL=4,0;RPP=8015.78,3553.37;RPPR=7.35324;RPR=3702,1635;RUN=1,1;SAF=0,0;SAP=8050.49,3553.37;SAR=3706,1635;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:21:0,18,3:0:0:18,3:644,104:-61.3237,-8.79971,-3.38117,-52.8721,0,-51.969	1/1:51:0,51,0:0:0:51,0:1828,0:-164.801,-15.3525,0,-164.801,-15.3525,-164.801	1/1:54:0,54,0:0:0:54,0:1934,0:-174.336,-16.2556,0,-174.336,-16.2556,-174.336	1/1:105:0,105,0:0:0:105,0:3765,0:-339.048,-31.6082,0,-339.048,-31.6082,-339.048	1/2:86:0,44,42:0:0:44,42:1565,1508:-250.908,-123.371,-110.126,-127.894,0,-115.251	1/2:39:0,14,25:0:0:14,25:504,892:-114.199,-73.0739,-68.8595,-41.4837,0,-33.9579	1/1:79:0,79,0:0:0:79,0:2823,0:-254.309,-23.7814,0,-254.309,-23.7814,-254.309	1/2:49:0,22,27:0:0:22,27:788,968:-143.574,-79.3096,-72.6869,-64.6221,0,-56.4943	1/2:45:0,39,6:0:0:39,6:1396,216:-131.824,-17.9843,-6.24416,-114.199,0,-112.393	1/2:54:0,38,16:0:0:38,16:1360,576:-158.261,-47.3585,-35.9194,-111.261,0,-106.445	1/2:42:0,21,21:0:0:21,21:756,756:-123.731,-62.0456,-55.724,-62.0456,0,-55.724	1/1:52:0,52,0:0:0:52,0:1868,0:-168.399,-15.6536,0,-168.399,-15.6536,-168.399	1/2:69:0,40,29:0:0:40,29:1440,1044:-203.042,-85.5449,-73.5037,-117.857,0,-109.127	1/2:50:0,26,24:0:0:26,24:917,855:-144.709,-70.0455,-62.2187,-75.0178,0,-67.7931	1/2:53:0,27,26:0:0:27,26:972,936:-156.043,-76.7327,-68.6049,-79.6701,0,-71.8433	1/2:42:0,22,20:0:0:22,20:792,703:-122.201,-57.5729,-50.9503,-64.983,0,-58.9624	1/2:65:0,34,30:0:0:34,30:1198,1057:-183.584,-86.0479,-75.8129,-97.5285,0,-88.4976	1/1:57:0,57,0:0:0:57,0:2051,0:-184.861,-17.1587,0,-184.861,-17.1587,-184.861	1/2:64:0,22,42:0:0:22,42:788,1508:-187.635,-123.371,-116.749,-64.6221,0,-51.9789	1/2:102:0,55,47:0:0:55,47:1980,1692:-299.976,-138.418,-121.862,-161.918,0,-147.769	1/2:98:0,50,48:0:0:50,48:1800,1720:-287.508,-140.636,-125.585,-147.231,0,-132.781	1/2:84:1,32,51:1:36:32,51:1152,1793:-236.697,-142.998,-136.302,-91.0599,0,-78.6448	1/1:45:0,45,0:0:0:45,0:1620,0:-146.09,-13.5464,0,-146.09,-13.5464,-146.09	1/2:62:0,42,20:0:0:42,20:1503,705:-180.319,-57.7522,-45.1089,-122.921,0,-116.9	1/1:53:0,53,0:0:0:53,0:1885,0:-169.922,-15.9546,0,-169.922,-15.9546,-169.922	1/2:154:0,72,82:0:0:72,82:2592,2952:-452.722,-241.228,-219.554,-211.854,0,-187.169	1/1:133:0,133,0:0:0:133,0:4764,0:-428.916,-40.037,0,-428.916,-40.037,-428.916	1/2:29:0,16,13:0:0:16,13:576,455:-84.3727,-37.3686,-32.5521,-47.3585,0,-43.4451	1/2:158:0,83,75:0:0:83,75:2974,2696:-462.854,-220.307,-195.321,-242.906,0,-220.329	1/2:47:0,28,19:0:0:28,19:1004,669:-136.707,-54.8144,-46.3855,-82.247,0,-76.5275	1/2:73:0,37,36:0:0:37,36:1328,1296:-214.432,-106.107,-94.9687,-108.684,0,-97.847	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:16:0,4,12:0:0:4,12:144,432:-47.3585,-35.6088,-34.4047,-12.1095,0,-8.49714	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:6:0,2,4:0:0:2,4:72,144:-17.9843,-12.1095,-11.5074,-6.23466,0,-5.03054	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/2:151:0,82,69:0:0:82,69:2952,2476:-443.191,-202.322,-177.638,-241.228,0,-220.457	1/2:55:0,39,16:0:0:39,16:1396,576:-161.198,-47.3585,-35.6183,-114.199,0,-109.382	1/2:44:0,21,23:0:0:21,23:748,820:-128.166,-67.1988,-60.8772,-61.3237,0,-54.4	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:60:0,60,0:0:0:60,0:2156,0:-194.307,-18.0618,0,-194.307,-18.0618,-194.307	1/2:35:0,14,21:0:0:14,21:504,752:-102.809,-61.6846,-57.4702,-41.4837,0,-35.162	1/2:49:0,18,31:0:0:18,31:644,1102:-142.673,-90.1576,-84.7391,-52.8721,0,-43.5401	1/2:67:0,40,27:0:0:40,27:1436,968:-196.447,-79.3096,-67.2684,-117.496,0,-109.369	1/2:35:0,21,14:0:0:21,14:756,504:-103.169,-41.4837,-35.162,-62.0456,0,-57.8312	1/1:72:0,72,0:0:0:72,0:2584,0:-232.809,-21.6742,0,-232.809,-21.6742,-232.809	1/1:83:0,83,0:0:0:83,0:2941,0:-264.922,-24.9855,0,-264.922,-24.9855,-264.922	1/1:77:0,77,0:0:0:77,0:2740,0:-246.841,-23.1793,0,-246.841,-23.1793,-246.841	1/2:48:0,22,26:0:0:22,26:792,936:-141.356,-76.7327,-70.11,-64.983,0,-57.1562	1/2:65:1,32,32:1:36:32,32:1142,1129:-181.787,-88.9861,-82.2908,-90.1589,0,-83.4635	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/1:90:0,90,0:0:0:90,0:3212,0:-289.301,-27.0927,0,-289.301,-27.0927,-289.301	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	1/2:14:0,7,7:0:0:7,7:252,252:-41.4837,-20.9217,-18.8145,-20.9217,0,-18.8145	1/2:102:0,37,65:0:0:37,65:1322,2317:-297.004,-189.217,-178.079,-108.144,0,-88.5767	1/2:29:0,18,11:0:0:18,11:633,395:-84.1012,-32.5808,-27.1623,-51.8765,0,-48.5652	.:.:.:.:.:.:.:.	1/2:8:0,5,3:0:0:5,3:176,108:-23.4951,-9.17208,-7.66693,-14.6799,0,-13.7768	1/2:37:0,25,12:0:0:25,12:896,432:-108.684,-35.6088,-28.0831,-73.4346,0,-69.8222	1/2:110:0,56,54:0:0:56,54:1999,1934:-320.822,-158.081,-141.223,-163.098,0,-146.842	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:101:0,57,44:0:0:57,44:2052,1576:-296.32,-128.886,-111.728,-167.793,0,-154.547	1/2:78:0,40,38:0:0:40,38:1436,1345:-227.049,-109.909,-97.8678,-117.496,0,-106.057	1/2:27:0,15,12:0:0:15,12:531,428:-78.4976,-35.2464,-30.731,-43.6065,0,-39.9941	1/1:65:0,65,0:0:0:65,0:2315,0:-208.61,-19.567,0,-208.61,-19.567,-208.61	1/2:99:0,56,43:0:0:56,43:2008,1535:-289.276,-125.498,-108.64,-164.136,0,-151.191	1/2:22:0,15,7:0:0:15,7:536,252:-64.6221,-20.9217,-16.4063,-44.0594,0,-41.9522	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:50:0,50,0:0:0:50,0:1792,0:-161.562,-15.0515,0,-161.562,-15.0515,-161.562	1/2:68:0,25,43:0:0:25,43:894,1535:-198.395,-125.498,-117.972,-73.2544,0,-60.3101	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:52:0,52,0:0:0:52,0:1868,0:-168.399,-15.6536,0,-168.399,-15.6536,-168.399	1/2:32:0,22,10:0:0:22,10:788,360:-93.9969,-29.734,-23.1113,-64.6221,0,-61.6118	1/1:88:0,88,0:0:0:88,0:3156,0:-284.265,-26.4906,0,-284.265,-26.4906,-284.265	1/1:104:0,104,0:0:0:104,0:3732,0:-336.08,-31.3071,0,-336.08,-31.3071,-336.08	1/2:79:0,44,35:0:0:44,35:1584,1256:-232.056,-102.809,-89.5639,-129.606,0,-119.07	1/2:40:0,17,23:0:0:17,23:603,828:-117.046,-67.9204,-62.8029,-49.482,0,-42.5583	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:61:0,61,0:0:0:61,0:2176,0:-196.105,-18.3628,0,-196.105,-18.3628,-196.105	1/2:66:0,28,38:0:0:28,38:1008,1368:-194.229,-111.982,-103.553,-82.6075,0,-71.1684	1/1:102:0,102,0:0:0:102,0:3657,0:-329.332,-30.7051,0,-329.332,-30.7051,-329.332	1/2:83:0,39,44:0:0:39,44:1390,1571:-241.736,-128.436,-116.695,-113.657,0,-100.412	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/2:63:0,28,35:0:0:28,35:999,1243:-183.078,-101.638,-93.209,-81.7957,0,-71.2596	1/1:115:0,115,0:0:0:115,0:4113,0:-370.353,-34.6185,0,-370.353,-34.6185,-370.353	1/2:44:0,31,13:0:0:31,13:1090,464:-126.905,-38.1841,-28.8522,-89.076,0,-85.1626	1/2:51:0,22,29:0:0:22,29:788,1038:-149.268,-85.004,-78.3814,-64.6221,0,-55.8923	1/1:47:0,47,0:0:0:47,0:1678,0:-151.307,-14.1484,0,-151.307,-14.1484,-151.307	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7925,-9.0309,0,-96.7925,-9.0309,-96.7925	1/2:77:0,39,38:0:0:39,38:1404,1364:-226.181,-111.622,-99.8814,-114.919,0,-103.48	1/2:68:0,21,47:0:0:21,47:756,1671:-198.215,-136.528,-130.206,-62.0456,0,-47.8972	1/1:45:0,45,0:0:0:45,0:1602,0:-144.47,-13.5464,0,-144.47,-13.5464,-144.47	1/1:58:0,58,0:0:0:58,0:2069,0:-186.48,-17.4597,0,-186.48,-17.4597,-186.48
chr09	6136656	.	GTTAG	GTTAC,ATTAC	148463	PASS	AB=0.507288,0.489691;ABP=5.60557,8.20392;AC=129,59;AF=0.68617,0.31383;AN=188;AO=6161,2761;CIGAR=4M1X,1X3M1X;DP=8950;DPB=8951;DPRA=24.0484,1.11561;EPP=13381.5,5998.45;EPPR=0;GTI=3;LEN=1,5;MEANALT=1.91398,2.27119;MQM=37.267,25.3481;MQMR=0;NS=94;NUMALT=2;ODDS=0.374583;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=88,88;PQR=0;PRO=0;QA=220454,98153;QR=0;RO=0;RPL=0,0;RPP=13381.5,5998.45;RPPR=0;RPR=6161,2761;RUN=1,1;SAF=6161,2761;SAP=13381.5,5998.45;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,13,12:0:0:13,12:460,432:-57.1707,-22.3439,-18.4305,-35.1093,0,-31.4969	1/1:199:0,199,0:0:0:199,0:7121,0:-589.751,-59.905,0,-589.751,-59.905,-589.751	1/1:62:0,62,0:0:0:62,0:2228,0:-186.72,-18.6639,0,-186.72,-18.6639,-186.72	1/1:136:0,136,0:0:0:136,0:4856,0:-405.263,-40.9401,0,-405.263,-40.9401,-405.263	1/2:62:0,36,26:0:0:36,26:1284,916:-149.082,-51.4224,-40.5853,-97.9469,0,-90.1201	1/2:75:0,44,31:0:0:44,31:1580,1104:-173.871,-56.6335,-43.3882,-117.512,0,-108.18	1/1:111:0,111,0:0:0:111,0:3988,0:-335.099,-33.4143,0,-335.099,-33.4143,-335.099	1/2:188:0,108,80:0:0:108,80:3880,2837:-436.923,-146.377,-113.866,-290.823,0,-266.74	1/2:111:0,63,48:0:0:63,48:2252,1687:-258.095,-88.2863,-69.3214,-170.088,0,-155.638	1/2:128:0,57,71:0:0:57,71:2044,2477:-294.221,-139.595,-122.437,-154.865,0,-133.492	1/2:60:0,33,27:0:0:33,27:1179,970:-140.098,-52.1218,-42.1878,-88.2603,0,-80.1325	1/1:95:0,94,0:0:0:94,0:3350,0:-277.97,-28.2968,0,-277.97,-28.2968,-277.97	1/2:92:0,34,58:0:0:34,58:1224,2062:-198.445,-106.342,-96.107,-92.4014,0,-74.9417	1/2:141:0,69,72:0:0:69,72:2480,2547:-326.279,-142.202,-121.431,-184.37,0,-162.696	1/2:99:0,50,47:0:0:50,47:1800,1671:-229.478,-92.9163,-77.8648,-136.631,0,-122.482	1/2:80:0,32,48:0:0:32,48:1148,1718:-182.205,-96.243,-86.61,-86.263,0,-71.8135	1/2:101:0,49,52:0:0:49,52:1747,1856:-225.931,-95.3759,-80.6255,-130.84,0,-115.186	1/1:90:0,90,0:0:0:90,0:3215,0:-267.302,-27.0927,0,-267.302,-27.0927,-267.302	1/2:54:0,29,24:0:0:29,24:1044,858:-122.241,-43.9903,-35.2605,-78.292,0,-71.0672	1/2:138:0,76,62:0:0:76,62:2732,2218:-328.444,-122.391,-99.5128,-206.342,0,-187.678	1/2:141:0,86,55:0:0:86,55:3065,1959:-342.868,-109.364,-83.4757,-233.79,0,-217.233	1/2:48:0,12,36:0:0:12,36:432,1277:-104.294,-71.3786,-67.7662,-33.232,0,-22.3949	1/1:23:0,23,0:0:0:23,0:801,0:-68.1283,-6.92369,0,-68.1283,-6.92369,-68.1283	1/2:139:0,67,71:0:0:67,71:2403,2530:-323.052,-141.087,-120.918,-182.07,0,-160.697	1/1:75:0,74,0:0:0:74,0:2656,0:-224.855,-22.2762,0,-224.855,-22.2762,-224.855	1/2:277:0,129,148:0:0:129,148:4620,5280:-637.556,-291.95,-253.117,-345.9,0,-301.348	1/1:213:0,210,2:0:0:210,2:7520,72:-632.407,-63.2163,0,-628.405,-59.1815,-627.803	1/2:62:0,31,31:0:0:31,31:1103,1106:-145.873,-61.6829,-52.351,-84.4848,0,-75.1529	1/2:141:0,81,59:0:0:81,59:2892,2104:-334.815,-115.837,-91.4533,-218.927,0,-201.166	1/2:116:0,60,55:0:0:60,55:2143,1951:-271.527,-108.734,-90.6723,-162.895,0,-146.339	1/2:93:0,53,40:0:0:53,40:1889,1428:-223.684,-79.4609,-63.5063,-144.512,0,-132.471	1/1:6:0,6,0:0:0:6,0:216,0:-18.6318,-1.80618,0,-18.6318,-1.80618,-18.6318	1/2:6:0,5,1:0:0:5,1:180,36:-14.5462,-2.25768,-0.752526,-12.5526,0,-12.2516	1/1:4:0,4,0:0:0:4,0:144,0:-12.3807,-1.20412,0,-12.3807,-1.20412,-12.3807	1/1:2:0,2,0:0:0:2,0:72,0:-6.35768,-0.60206,0,-6.35768,-0.60206,-6.35768	2/2:4:0,0,4:0:0:0,4:0,144:-8.78206,-8.78206,-8.78206,-1.20412,-1.20412,0	1/2:238:0,106,132:0:0:106,132:3796,4703:-544.015,-260.668,-228.759,-283.642,0,-243.906	1/2:115:0,57,57:0:0:57,57:2048,2026:-268.355,-113.513,-96.3539,-154.926,0,-137.767	1/2:97:0,39,58:0:0:39,58:1400,2060:-211.794,-106.374,-94.634,-105.714,0,-88.2546	1/1:2:0,2,0:0:0:2,0:57,0:-5.18193,-0.60206,0,-5.18193,-0.60206,-5.18193	1/1:142:0,140,0:0:0:140,0:4979,0:-417.79,-42.1442,0,-417.79,-42.1442,-417.79	1/2:36:0,18,18:0:0:18,18:648,645:-84.8335,-35.1459,-29.7274,-49.9819,0,-44.5634	1/2:112:0,57,55:0:0:57,55:2040,1966:-264.608,-109.275,-92.1159,-155.628,0,-139.071	1/2:91:0,43,48:0:0:43,48:1540,1699:-212.376,-95.3883,-82.444,-117.285,0,-102.836	1/2:92:0,46,46:0:0:46,46:1627,1642:-214.785,-91.7604,-77.913,-123.317,0,-109.47	1/1:86:0,86,0:0:0:86,0:3080,0:-260.656,-25.8886,0,-260.656,-25.8886,-260.656	1/1:107:0,105,0:0:0:105,0:3768,0:-313.377,-31.6082,0,-313.377,-31.6082,-313.377	1/1:165:0,165,0:0:0:165,0:5897,0:-495.796,-49.67,0,-495.796,-49.67,-495.796	1/2:97:0,59,38:0:0:59,38:2112,1342:-236.188,-75.3051,-57.5444,-161.169,0,-149.729	1/2:127:0,65,62:0:0:65,62:2317,2198:-299.615,-123.578,-104.011,-176.33,0,-157.666	1/1:120:0,120,0:0:0:120,0:4304,0:-362.349,-36.1236,0,-362.349,-36.1236,-362.349	1/2:2:0,1,1:0:0:1,1:36,36:-5.04693,-2.25768,-1.95665,-3.08657,0,-2.78554	1/1:76:0,76,0:0:0:76,0:2728,0:-227.766,-22.8783,0,-227.766,-22.8783,-227.766	1/1:54:0,54,0:0:0:54,0:1936,0:-160.562,-16.2556,0,-160.562,-16.2556,-160.562	1/2:4:0,2,2:0:0:2,2:72,66:-9.31206,-3.84067,-3.23861,-5.75562,0,-5.15356	1/2:101:0,58,42:0:0:58,42:2046,1492:-239.15,-83.0872,-65.6274,-156.144,0,-143.501	1/2:10:0,5,5:0:0:5,5:180,176:-23.4269,-9.63959,-8.13444,-14.0778,0,-12.5727	1/2:5:0,4,1:0:0:4,1:129,36:-12.1228,-2.25768,-1.05356,-10.1311,0,-9.83006	1/2:24:0,10,14:0:0:10,14:360,497:-55.3288,-28.0541,-25.0438,-27.5767,0,-23.3622	1/2:80:0,48,31:0:0:48,31:1712,1093:-192.463,-61.7455,-47.296,-130.816,0,-121.484	1/2:163:0,79,83:0:0:79,83:2816,2963:-375.891,-162.64,-138.858,-213.356,0,-188.37	1/1:3:0,3,0:0:0:3,0:104,0:-9.18071,-0.90309,0,-9.18071,-0.90309,-9.18071	1/2:160:0,79,79:0:0:79,79:2828,2810:-370.156,-157.496,-133.715,-212.733,0,-188.951	1/2:180:0,98,82:0:0:98,82:3512,2922:-429.018,-162.338,-132.838,-266.912,0,-242.227	1/2:92:0,57,35:0:0:57,35:2048,1250:-225.99,-70.2153,-53.0566,-156.062,0,-145.525	1/1:59:0,59,0:0:0:59,0:2111,0:-177.384,-17.7608,0,-177.384,-17.7608,-177.384	1/2:139:0,78,60:0:0:78,60:2788,2134:-327.324,-119.086,-95.6053,-208.21,0,-190.148	1/2:88:0,38,50:0:0:38,50:1364,1745:-199.767,-97.8665,-86.4273,-102.197,0,-87.1453	1/1:34:0,34,0:0:0:34,0:1220,0:-102.208,-10.235,0,-102.208,-10.235,-102.208	1/1:83:0,83,0:0:0:83,0:2976,0:-248.767,-24.9855,0,-248.767,-24.9855,-248.767	1/2:161:0,77,84:0:0:77,84:2751,3003:-373.063,-163.901,-140.722,-209.456,0,-184.17	1/2:20:0,7,12:0:0:7,12:248,422:-42.8915,-23.8832,-21.776,-19.1072,0,-15.4948	1/1:51:0,51,0:0:0:51,0:1821,0:-151.174,-15.3525,0,-151.174,-15.3525,-151.174	1/2:63:0,32,30:0:0:32,30:1128,1062:-138.315,-55.1418,-45.5088,-83.2191,0,-74.1882	1/1:212:0,212,0:0:0:212,0:7579,0:-637.571,-63.8184,0,-637.571,-63.8184,-637.571	1/1:108:0,108,0:0:0:108,0:3848,0:-324.882,-32.5112,0,-324.882,-32.5112,-324.882	1/2:123:0,60,63:0:0:60,63:2152,2229:-276.095,-115.363,-97.3011,-161.017,0,-142.052	1/2:130:0,58,71:0:0:58,71:2072,2527:-283.353,-129.742,-112.282,-153.659,0,-132.286	1/1:9:0,9,0:0:0:9,0:324,0:-27.4384,-2.70927,0,-27.4384,-2.70927,-27.4384	1/1:123:0,121,0:0:0:121,0:4320,0:-363.911,-36.4246,0,-363.911,-36.4246,-363.911	1/2:87:0,37,50:0:0:37,50:1332,1760:-187.703,-91.2916,-80.1535,-96.6974,0,-81.6459	1/1:178:0,178,0:0:0:178,0:6373,0:-537.771,-53.5833,0,-537.771,-53.5833,-537.771	1/2:159:0,81,78:0:0:81,78:2904,2788:-374.288,-154.841,-130.458,-219.74,0,-196.26	1/1:85:0,84,0:0:0:84,0:3012,0:-252.952,-25.2865,0,-252.952,-25.2865,-252.952	1/2:116:0,72,44:0:0:72,44:2566,1573:-279.079,-87.4519,-65.7777,-191.91,0,-178.664	1/1:203:0,203,0:0:0:203,0:7304,0:-614.986,-61.1091,0,-614.986,-61.1091,-614.986	1/2:46:0,27,19:0:0:27,19:972,672:-108.217,-34.9763,-26.8485,-73.5182,0,-67.7986	1/2:103:0,56,47:0:0:56,47:2008,1665:-235.819,-86.209,-69.3513,-149.89,0,-135.741	1/1:92:0,92,0:0:0:92,0:3288,0:-273.28,-27.6948,0,-273.28,-27.6948,-273.28	1/1:67:0,67,0:0:0:67,0:2384,0:-199.602,-20.169,0,-199.602,-20.169,-199.602	1/2:99:0,51,47:0:0:51,47:1836,1678:-232.788,-93.4802,-78.1277,-139.344,0,-125.196	1/2:89:0,32,57:0:0:32,57:1148,2033:-201.295,-114.108,-104.475,-87.4935,0,-70.3348	1/1:80:0,80,0:0:0:80,0:2873,0:-238.975,-24.0824,0,-238.975,-24.0824,-238.975	1/1:165:0,164,0:0:0:164,0:5884,0:-492.632,-49.3689,0,-492.632,-49.3689,-492.632
chr09	6278130	.	TA	CA	23643.3	PASS	AB=0.577714;ABP=130.588;AC=60;AF=0.319149;AN=188;AO=1410;CIGAR=1X1M;DP=3769;DPB=3769;DPRA=1.1538;EPP=3056.11;EPPR=5108.14;GTI=1;LEN=1;MEANALT=1.07692;MQM=59.7525;MQMR=59.9809;NS=94;NUMALT=1;ODDS=0.69003;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49460;QR=83232;RO=2351;RPL=1409;RPP=3056.11;RPPR=5108.14;RPR=1;RUN=1;SAF=1410;SAP=3064.79;SAR=0;SRF=2351;SRP=5108.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:15,14:15:529:14:504:-36.9682,0,-39.2108	0/0:26:26,0:26:925:0:0:0,-7.82678,-83.568	0/0:73:72,1:72:2536:1:36:0,-18.3769,-224.891	0/0:53:53,0:53:1894:0:0:0,-15.9546,-170.739	0/1:46:23,23:23:826:23:803:-58.7318,0,-60.8164	0/1:42:12,30:12:426:30:1046:-81.8051,0,-26.0345	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:74:28,46:28:987:46:1635:-125.162,0,-66.8667	0/1:56:20,32:20:718:32:1140:-86.9073,0,-48.9455	0/1:28:13,15:13:466:15:527:-39.3313,0,-33.8498	0/1:15:7,8:7:245:8:271:-20.204,0,-17.8752	0/0:25:25,0:25:882:0:0:0,-7.52575,-79.6979	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	0/1:12:8,4:8:281:4:131:-8.50111,0,-22.018	0/1:18:8,10:8:288:10:352:-26.5997,0,-20.8489	0/1:19:9,10:9:324:10:352:-26.294,0,-23.7863	0/1:13:4,9:4:133:9:305:-23.8638,0,-8.3842	0/0:6:6,0:6:192:0:0:0,-1.80618,-17.5935	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:74:36,38:36:1290:38:1348:-99.344,0,-94.1278	0/1:63:21,41:21:754:41:1426:-109.718,0,-49.2681	0/1:80:27,53:27:964:53:1871:-144.566,0,-62.9948	0/0:95:94,1:94:3343:1:36:0,-24.9996,-297.488	0/1:35:10,25:10:352:25:888:-69.703,0,-21.4826	0/0:52:52,0:52:1817:0:0:0,-15.6536,-163.809	0/1:131:57,72:57:2040:72:2536:-189.224,0,-144.68	0/0:63:62,1:62:2195:1:32:0,-15.7656,-194.617	0/1:12:7,5:7:252:5:165:-11.5612,0,-19.4166	0/1:103:56,47:56:1962:47:1676:-120.113,0,-145.847	0/1:74:27,47:27:950:47:1663:-127.676,0,-63.5292	0/1:64:24,40:24:846:40:1395:-106.568,0,-57.1922	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.448	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3242	0/1:11:8,3:8:286:3:108:-6.76384,0,-22.7742	0/1:29:3,26:3:108:26:914:-73.846,0,-1.3453	0/1:50:20,30:20:680:30:1063:-80.926,0,-46.4622	0/1:79:29,50:29:1033:50:1779:-136.596,0,-69.5024	0/1:11:4,7:4:144:7:228:-17.5263,0,-10.0023	0/1:8:2,6:2:72:6:203:-16.1929,0,-4.42848	0/0:34:33,1:33:1173:1:36:0,-6.63674,-102.278	0/1:13:5,8:5:180:8:269:-20.6227,0,-12.6387	0/1:120:53,67:53:1893:67:2325:-173.347,0,-134.524	0/1:13:5,8:5:180:8:271:-20.806,0,-12.6387	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.037	0/0:46:46,0:46:1638:0:0:0,-13.8474,-147.708	0/0:89:89,0:89:3137:0:0:0,-26.7917,-282.555	0/1:47:22,25:22:777:25:900:-67.1726,0,-56.103	0/1:50:13,37:13:464:37:1294:-101.708,0,-27.0462	0/0:55:55,0:55:1948:0:0:0,-16.5566,-175.596	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:76:76,0:76:2687:0:0:0,-22.8783,-242.074	0/0:24:24,0:24:857:0:0:0,-7.22472,-77.4513	0/1:19:9,10:9:319:10:360:-27.0247,0,-23.3318	0/1:57:31,26:31:1086:26:893:-63.5202,0,-80.8885	0/1:27:13,14:13:462:14:500:-37.2084,0,-33.789	0/1:12:5,7:5:167:7:252:-19.4166,0,-11.7458	0/1:14:3,11:3:106:11:396:-31.7601,0,-5.67468	0/1:41:16,25:16:553:25:883:-67.4452,0,-37.752	0/1:52:30,22:30:1074:22:768:-53.7733,0,-81.3194	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:69:30,39:30:1059:39:1384:-104.088,0,-74.8487	0/1:90:35,55:35:1236:55:1929:-146.784,0,-84.4485	0/1:13:3,10:3:108:10:348:-27.7417,0,-6.16178	0/0:42:42,0:42:1485:0:0:0,-12.6433,-133.944	0/1:104:64,40:64:2264:40:1383:-93.4562,0,-172.715	0/1:118:30,87:30:1064:87:3090:-242.481,0,-60.6295	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9737	0/0:26:26,0:26:910:0:0:0,-7.82678,-82.2134	0/1:25:16,9:16:564:9:309:-20.615,0,-43.5641	0/1:5:3,2:3:106:2:68:-4.95256,0,-8.38395	0/0:76:76,0:76:2677:0:0:0,-22.8783,-241.175	0/1:28:11,17:11:396:17:596:-45.5389,0,-27.5539	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.331	0/0:24:24,0:24:858:0:0:0,-7.22472,-77.5418	0/1:56:26,30:26:908:30:1059:-78.7627,0,-65.1751	0/1:19:8,11:8:288:11:387:-29.4464,0,-20.5478	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:21:20,1:20:716:1:36:0,-2.72335,-61.1697	0/1:49:21,28:21:754:28:974:-73.2202,0,-53.4364	0/0:89:89,0:89:3080:0:0:0,-26.7917,-277.426	0/1:47:23,24:23:810:24:798:-57.9754,0,-59.0711	0/0:11:11,0:11:394:0:0:0,-3.31133,-35.8015	0/1:14:3,11:3:108:11:378:-30.1347,0,-5.86075	0/0:31:31,0:31:1114:0:0:0,-9.33193,-100.572	0/1:20:5,15:5:180:15:510:-40.2015,0,-10.5315	0/1:19:7,12:7:247:12:394:-30.0549,0,-16.8533	0/0:21:21,0:21:733:0:0:0,-6.32163,-66.2902	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0977	0/1:35:12,23:12:419:23:784:-60.2754,0,-27.5063	0/1:18:7,11:7:250:11:381:-29.1959,0,-17.4281	0/0:47:47,0:47:1666:0:0:0,-14.1484,-150.226	0/0:21:21,0:21:742:0:0:0,-6.32163,-67.1034
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chr09	6437132	.	G	A	98387.4	PASS	AB=0.421641;ABP=255.86;AC=126;AF=0.677419;AN=186;AO=4950;CIGAR=1X;DP=7697;DPB=7697;DPRA=41.8207;EPP=10424.3;EPPR=5722.98;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.2638;MQMR=59.7967;NS=93;NUMALT=1;ODDS=0.670646;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173754;QR=96595;RO=2745;RPL=4912;RPP=10424.3;RPPR=5722.98;RPR=38;RUN=1;SAF=0;SAP=10751.8;SAR=4950;SRF=0;SRP=5963.7;SRR=2745;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:52,21:52:1805:21:724:-43.4972,0,-140.525	1/1:72:0,72:0:0:72:2516:-226.513,-21.6742,0	1/1:105:0,105:0:0:105:3716:-334.395,-31.6082,0	1/1:208:0,208:0:0:208:7352:-661.571,-62.6142,0	0/1:44:21,23:21:736:23:796:-58.7042,0,-53.2979	0/1:60:29,31:29:1016:31:1092:-80.48,0,-73.6899	1/1:39:0,39:0:0:39:1364:-122.552,-11.7402,0	0/1:196:115,81:115:4067:81:2827:-195.596,0,-307.202	0/1:98:61,37:61:2087:37:1297:-87.3119,0,-158.596	0/1:59:32,27:32:1124:27:944:-67.0996,0,-83.7072	0/1:19:12,7:12:428:7:225:-14.8449,0,-33.1392	1/1:52:0,52:0:0:52:1852:-166.782,-15.6536,0	0/1:36:18,18:18:640:18:630:-46.1485,0,-47.0922	0/1:25:9,16:9:320:16:564:-43.5435,0,-21.6166	0/1:54:32,22:32:1124:22:776:-53.8903,0,-85.2123	0/1:37:16,21:16:572:21:748:-56.5072,0,-40.6606	0/1:15:11,4:11:379:4:144:-8.79577,0,-29.9251	1/1:15:0,15:0:0:15:536:-48.5739,-4.51545,0	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/1:274:142,132:142:5047:132:4669:-337.759,0,-371.893	0/1:96:65,31:65:2277:31:1082:-68.7277,0,-176.162	0/1:162:119,42:119:4207:42:1476:-84.2325,0,-327.784	1/1:117:0,116:0:0:116:4054:-364.553,-34.9195,0	0/1:42:27,15:27:952:15:520:-34.4384,0,-73.3519	1/1:107:1,106:1:36:106:3708:-330.098,-28.6119,0	0/1:290:157,133:157:5519:133:4672:-333.285,0,-408.274	1/1:221:0,221:0:0:221:7760:-697.452,-66.5276,0	0/1:27:18,9:18:624:9:324:-21.378,0,-48.3564	0/1:297:181,116:181:6410:116:4057:-275.629,0,-484.477	0/1:93:68,25:68:2391:25:868:-50.4381,0,-187.254	0/1:91:67,24:67:2376:24:835:-48.0676,0,-186.703	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:7:3,4:3:104:4:140:-10.8374,0,-7.594	0/1:8:6,2:6:193:2:68:-4.04947,0,-15.2774	0/1:129:52,77:52:1836:77:2726:-206.684,0,-126.688	0/1:136:67,69:67:2359:69:2424:-177.448,0,-171.629	0/1:30:15,15:15:532:15:532:-38.91,0,-39.1822	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:91:0,91:0:0:91:3213:-289.131,-27.3937,0	0/1:9:3,6:3:108:6:216:-17.0766,0,-7.3659	0/1:209:115,94:115:4027:94:3308:-234.838,0,-299.684	0/1:33:11,22:11:392:22:788:-61.3085,0,-25.6861	0/1:29:17,12:17:604:12:424:-29.7665,0,-45.9607	1/1:99:0,99:0:0:99:3475:-312.915,-29.802,0	1/1:139:0,139:0:0:139:4922:-442.706,-41.8432,0	1/1:175:0,175:0:0:175:6155:-553.831,-52.6803,0	0/1:129:74,55:74:2595:55:1924:-134.407,0,-194.968	0/1:65:39,26:39:1360:26:920:-63.5478,0,-103.131	1/1:111:0,111:0:0:111:3900:-351.194,-33.4143,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:76:1,75:1:36:75:2613:-231.624,-19.28,0	1/1:29:0,29:0:0:29:1020:-92.1122,-8.72987,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:181:101,80:101:3519:80:2784:-196.298,0,-262.437	0/1:39:19,20:19:684:20:692:-50.8538,0,-50.1502	0/1:5:4,1:4:136:1:36:-2.09312,0,-11.0704	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:51:25,26:25:868:26:920:-67.7564,0,-63.0832	0/1:54:33,21:33:1176:21:740:-50.6166,0,-89.8921	.:.:.:.:.:.:.:.	0/1:174:85,89:85:2994:89:3076:-221.155,0,-216.816	0/1:174:102,72:102:3560:72:2513:-173.612,0,-268.224	0/1:58:31,27:31:1065:27:937:-67.1709,0,-78.6064	1/1:69:0,69:0:0:69:2408:-216.904,-20.7711,0	0/1:213:128,85:128:4510:85:2996:-205.704,0,-341.951	0/1:183:144,39:144:5080:39:1372:-68.6796,0,-402.216	1/1:17:0,17:0:0:17:604:-54.6778,-5.11751,0	1/1:70:0,70:0:0:70:2476:-223.081,-21.0721,0	0/1:34:20,14:20:695:14:496:-33.5414,0,-52.6327	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:100:0,100:0:0:100:3434:-306.505,-30.103,0	0/1:86:43,43:43:1520:43:1507:-109.86,0,-111.205	1/1:202:0,202:0:0:202:7060:-635.149,-60.8081,0	1/1:153:0,153:0:0:153:5352:-481.633,-46.0576,0	0/1:142:82,60:82:2886:60:2124:-148.575,0,-217.225	0/1:103:61,42:61:2143:42:1461:-100.678,0,-162.132	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:115:0,115:0:0:115:3974:-357.807,-34.6185,0	0/1:136:69,67:69:2445:67:2363:-171.881,0,-179.364	1/1:201:0,201:0:0:201:7086:-636.019,-60.507,0	0/1:34:20,14:20:712:14:496:-34.7346,0,-54.1707	1/1:46:0,46:0:0:46:1624:-146.441,-13.8474,0	0/1:22:9,13:9:312:13:468:-35.837,0,-21.7927	1/1:78:0,78:0:0:78:2756:-248.212,-23.4803,0	0/1:26:12,14:12:432:14:504:-37.8408,0,-31.3944	0/1:26:15,11:15:519:11:392:-27.7851,0,-39.2099	1/1:49:0,49:0:0:49:1744:-157.148,-14.7505,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:43:27,16:27:952:16:576:-39.2225,0,-73.0509	0/1:47:35,12:35:1248:12:432:-24.5743,0,-98.4765	1/1:108:0,108:0:0:108:3707:-333.784,-32.5112,0	1/1:67:0,67:0:0:67:2368:-213.364,-20.169,0
chr09	6881182	.	AGCAC	AGCAG	54442.3	PASS	AB=0.387994;ABP=1025.01;AC=93;AF=0.494681;AN=188;AO=3648;CIGAR=4M1X;DP=9395;DPB=9402.4;DPRA=44.2135;EPP=7924.54;EPPR=12308.7;GTI=10;LEN=1;MEANALT=1.57143;MQM=59.9989;MQMR=59.9952;NS=94;NUMALT=1;ODDS=1.32964;PAIRED=0;PAIREDR=0;PAO=5.5;PQA=194;PQR=0;PRO=0;QA=130274;QR=199513;RO=5667;RPL=0;RPP=7924.54;RPPR=12308.7;RPR=3648;RUN=1;SAF=3648;SAP=7924.54;SAR=0;SRF=5667;SRP=12308.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:80:57,20:57:2023:20:716:-41.2747,0,-158.856	0/1:86:47,39:47:1639:39:1396:-100.051,0,-121.909	0/1:191:90,100:90:3128:100:3576:-264.491,0,-224.193	0/1:215:99,113:99:3501:113:4049:-300.417,0,-251.124	0/1:68:47,21:47:1673:21:756:-47.8972,0,-130.388	0/1:59:39,15:39:1360:15:540:-32.3226,0,-106.085	0/1:77:38,39:38:1342:39:1404:-103.48,0,-97.9004	0/1:92:61,31:61:2123:31:1101:-71.7036,0,-163.642	0/1:114:88,25:88:3122:25:896:-46.5842,0,-246.833	0/1:120:87,32:87:3087:32:1152:-67.8077,0,-241.878	0/1:48:35,12:35:1246:12:432:-24.713,0,-97.9368	0/1:102:43,57:43:1526:57:2022:-151.787,0,-107.171	0/1:77:49,28:49:1756:28:993:-66.1436,0,-134.785	0/1:48:38,9:38:1348:9:324:-14.9976,0,-107.112	0/1:63:43,19:43:1521:19:680:-42.506,0,-118.16	0/1:55:38,16:38:1360:16:576:-35.5595,0,-106.085	0/1:33:26,5:26:916:5:180:-6.86031,0,-73.0647	0/1:37:15,20:15:521:20:716:-53.872,0,-36.3237	0/1:18:10,7:10:349:7:252:-17.5516,0,-26.269	0/1:156:104,52:104:3670:52:1871:-121.709,0,-283.546	0/1:179:134,44:134:4684:44:1580:-88.5484,0,-367.752	0/1:171:129,42:129:4553:42:1508:-84.5385,0,-358.467	0/1:124:48,76:48:1673:76:2717:-207.385,0,-113.469	0/1:41:28,11:28:997:11:396:-23.8828,0,-77.9455	0/1:148:62,86:62:2161:86:3069:-231.826,0,-150.146	0/1:317:235,81:235:8297:81:2851:-161.447,0,-651.377	0/1:272:140,129:140:4901:129:4602:-333.005,0,-359.914	0/1:47:34,13:34:1159:13:468:-27.8955,0,-90.0461	0/1:321:220,100:220:7788:100:3581:-225.806,0,-604.27	0/1:80:57,23:57:1963:23:816:-49.6788,0,-152.863	0/1:88:60,24:60:2101:24:860:-52.0757,0,-163.712	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:20:13,7:13:465:7:248:-16.6436,0,-36.1675	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.8179	0/1:8:6,2:6:200:2:72:-4.42848,0,-15.9184	0/1:7:4,3:4:141:3:108:-7.96796,0,-10.9298	0/1:233:175,56:175:6209:56:2012:-111.436,0,-488.995	0/1:182:114,66:114:3996:66:2334:-155.772,0,-305.291	0/1:30:23,7:23:808:7:252:-13.9981,0,-64.009	0/0:1:1,0:1:33:0:0:0,-0.30103,-3.29913	0/1:135:83,52:83:2910:52:1868:-127.701,0,-221.441	0/1:15:11,4:11:373:4:144:-8.79817,0,-29.3806	0/1:131:82,49:82:2875:49:1741:-117.538,0,-219.554	0/1:27:21,6:21:754:6:216:-11.3035,0,-59.6999	0/1:67:44,22:44:1552:22:788:-51.0171,0,-119.744	0/1:170:62,108:62:2165:108:3869:-297.228,0,-143.938	0/1:173:63,110:63:2239:110:3881:-297.404,0,-149.696	0/1:224:88,135:88:3091:135:4836:-367.845,0,-210.872	0/1:114:71,43:71:2509:43:1548:-105.296,0,-191.746	0/1:112:72,39:72:2532:39:1389:-91.5335,0,-194.358	0/1:180:74,106:74:2592:106:3785:-286.662,0,-179.345	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:253:176,77:176:6106:77:2760:-172.481,0,-473.504	0/1:52:30,22:30:1059:22:788:-55.5912,0,-79.9679	0/1:7:2,5:2:68:5:176:-14.0778,0,-4.3505	0/1:158:108,49:108:3783:49:1726:-108,0,-293.04	0/1:37:28,9:28:974:9:324:-18.3677,0,-76.8323	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	0/1:6:4,2:4:139:2:72:-5.03054,0,-11.046	0/1:88:57,31:57:2026:31:1116:-74.2611,0,-156.122	0/1:130:100,26:100:3544:26:936:-46.2699,0,-280.882	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:216:156,60:156:5506:60:2152:-128.925,0,-430.653	0/1:159:102,55:102:3611:55:1965:-129.502,0,-277.578	0/1:74:53,20:53:1879:20:701:-41.0772,0,-147.054	0/1:99:38,61:38:1329:61:2177:-166.392,0,-90.1076	0/1:155:104,50:104:3686:50:1769:-112.773,0,-285.227	0/1:161:132,29:132:4647:29:1014:-43.1016,0,-369.933	0/1:15:5,10:5:179:10:360:-28.2289,0,-11.9449	0/1:45:34,11:34:1203:11:396:-22.4364,0,-95.0297	0/1:41:35,5:35:1252:5:165:-2.80876,0,-100.621	0/1:18:5,13:5:179:13:464:-36.679,0,-11.0419	0/1:105:44,60:44:1552:60:2130:-160.298,0,-108.305	0/1:100:69,31:69:2420:31:1101:-69.2954,0,-187.954	0/1:168:84,84:84:2966:84:2967:-216.685,0,-216.602	0/1:206:107,94:107:3729:94:3384:-243.913,0,-274.958	0/1:94:58,35:58:2046:35:1226:-82.3232,0,-156.097	0/1:54:47,6:47:1639:6:216:-3.4761,0,-131.482	0/1:14:4,10:4:126:10:360:-28.5299,0,-7.43752	0/1:164:83,77:83:2835:77:2739:-198.2,0,-206.848	0/1:105:68,37:68:2395:37:1321:-87.5241,0,-184.142	0/1:317:152,163:152:5344:163:5815:-428.289,0,-385.931	0/1:99:75,23:75:2651:23:824:-44.6307,0,-208.985	0/1:61:29,29:29:1033:29:1044:-76.4552,0,-75.4644	0/1:40:29,11:29:1035:11:396:-23.9415,0,-81.4228	0/1:130:66,64:66:2348:64:2300:-167.767,0,-172.086	0/1:39:29,9:29:1039:9:324:-17.7069,0,-82.0256	0/1:87:61,24:61:2173:24:864:-52.1352,0,-169.89	0/1:77:39,35:39:1371:35:1260:-91.0559,0,-101.038	0/1:18:8,10:8:276:10:360:-27.3258,0,-19.7568	0/1:98:69,29:69:2447:29:1040:-64.4134,0,-190.986	0/1:69:58,11:58:2042:11:396:-14.8608,0,-162.932	0/1:160:61,98:61:2159:98:3507:-267.556,0,-146.295	0/1:101:42,58:42:1505:58:2080:-157.007,0,-105.282
chr09	6881231	.	A	G	9342.81	PASS	AB=0.228605;ABP=3254.91;AC=55;AF=0.292553;AN=188;AO=1167;CIGAR=1X;DP=9122;DPB=9122;DPRA=0.920869;EPP=2537.12;EPPR=17274.9;GTI=18;LEN=1;MEANALT=1.01695;MQM=60;MQMR=59.9971;NS=94;NUMALT=1;ODDS=0.413436;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41599;QR=283342;RO=7954;RPL=1167;RPP=2537.12;RPPR=17274.9;RPR=0;RUN=1;SAF=1167;SAP=2537.12;SAR=0;SRF=7954;SRP=17274.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:81:61,20:61:2154:20:716:-40.3843,0,-169.741	0/0:85:85,0:85:3021:0:0:0,-25.5875,-272.12	0/0:183:183,0:183:6515:0:0:0,-55.0885,-586.433	0/0:210:210,0:210:7482:0:0:0,-63.2163,-673.424	0/1:64:52,12:52:1845:12:428:-19.5929,0,-147.062	0/1:59:48,11:48:1701:11:387:-17.4052,0,-135.613	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/1:87:67,20:67:2388:20:708:-37.856,0,-188.988	0/1:115:87,28:87:3109:28:1008:-56.4179,0,-245.417	0/1:119:87,32:87:3105:32:1148:-67.8073,0,-243.853	0/1:48:31,17:31:1101:17:608:-40.6026,0,-84.9489	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/1:77:61,16:61:2159:16:568:-28.2726,0,-171.398	0/1:45:30,15:30:1076:15:536:-35.0285,0,-83.6065	0/1:59:47,12:47:1662:12:428:-21.098,0,-132.103	0/1:54:46,8:46:1656:8:284:-9.64773,0,-133.073	0/1:32:21,11:21:756:11:392:-25.9871,0,-58.7343	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/1:17:13,4:13:464:4:140:-7.82707,0,-36.98	0/1:154:125,29:125:4462:29:1040:-47.5557,0,-355.389	0/1:174:138,36:138:4910:36:1277:-62.8527,0,-389.646	0/1:171:121,49:121:4328:49:1760:-107.149,0,-338.161	0/0:119:119,0:119:4218:0:0:0,-35.8226,-379.801	0/1:41:36,5:36:1281:5:180:-4.20984,0,-103.249	0/0:144:144,0:144:5137:0:0:0,-43.3483,-462.472	0/1:307:236,71:236:8387:71:2508:-133.552,0,-662.419	0/0:260:260,0:260:9188:0:0:0,-78.2678,-826.894	0/1:47:40,7:40:1394:7:252:-8.88055,0,-111.605	0/1:312:259,53:259:9220:53:1908:-78.0762,0,-735.849	0/1:76:56,20:56:1989:20:716:-41.8894,0,-156.404	0/1:84:69,15:69:2468:15:540:-23.65,0,-197.088	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:6,2:6:201:2:72:-4.42848,0,-16.0088	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:225:170,55:170:6088:55:1972:-110.023,0,-480.29	0/1:167:131,36:131:4647:36:1277:-64.9591,0,-368.119	0/1:29:21,8:21:756:8:284:-17.1735,0,-59.6374	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:129:129,0:129:4625:0:0:0,-38.8329,-416.411	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:129:98,31:98:3482:31:1104:-60.8378,0,-274.757	0/1:27:20,7:20:720:7:248:-14.5364,0,-57.001	0/1:65:56,9:56:2012:9:292:-7.02901,0,-161.786	0/0:167:167,0:167:5902:0:0:0,-50.272,-531.288	0/0:165:165,0:165:5867:0:0:0,-49.6699,-528.14	0/0:222:222,0:222:7879:0:0:0,-66.8287,-709.138	0/1:111:89,22:89:3173:22:792:-38.1913,0,-252.379	0/1:109:88,21:88:3144:21:752:-35.194,0,-250.374	0/0:176:176,0:176:6275:0:0:0,-52.9813,-564.841	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:244:244,0:244:8664:0:0:0,-73.4513,-779.753	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:148:115,33:115:4097:33:1167:-60.784,0,-324.363	0/1:36:27,9:27:964:9:316:-17.9412,0,-76.2397	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:83:73,10:73:2620:10:360:-7.75881,0,-211.062	0/1:130:88,42:88:3144:42:1508:-96.8807,0,-244.052	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:212:162,50:162:5739:50:1768:-95.5822,0,-452.81	0/1:156:131,25:131:4700:25:888:-33.2783,0,-376.198	0/1:68:54,14:54:1925:14:504:-25.2281,0,-153.055	0/0:97:97,0:97:3444:0:0:0,-29.1999,-310.173	0/1:149:107,42:107:3813:42:1508:-91.1611,0,-298.514	0/1:161:120,41:120:4270:41:1459:-83.1394,0,-336.011	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:40:28,12:28:1004:12:419:-26.0015,0,-78.6347	0/0:17:16,1:16:572:1:36:0,-1.51923,-48.2152	0/0:100:100,0:100:3546:0:0:0,-30.103,-319.348	0/1:96:64,32:64:2268:32:1140:-74.0103,0,-175.482	0/0:164:164,0:164:5848:0:0:0,-49.3689,-526.435	0/0:198:197,1:197:7031:1:36:0,-56.0057,-629.251	0/1:90:74,16:74:2629:16:576:-25.0823,0,-209.764	0/1:54:41,13:41:1468:13:468:-26.204,0,-116.16	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:155:153,2:153:5443:2:72:0,-39.8229,-483.16	0/1:102:78,24:78:2796:24:855:-46.5651,0,-221.175	0/0:310:310,0:310:11058:0:0:0,-93.3193,-995.112	0/1:97:85,12:85:3040:12:424:-9.29651,0,-244.63	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:38:30,8:30:1076:8:288:-14.8283,0,-85.7137	0/0:128:128,0:128:4572:0:0:0,-38.5318,-411.647	0/1:39:31,8:31:1104:8:288:-14.5272,0,-87.9305	0/1:85:64,21:64:2280:21:733:-40.7021,0,-179.875	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:96:68,28:68:2427:28:1004:-61.777,0,-189.786	0/1:65:40,25:40:1436:25:881:-60.0389,0,-109.971	0/0:159:159,0:159:5642:0:0:0,-47.8638,-507.903	0/0:95:94,1:94:3376:1:36:0,-24.9996,-300.457
chr09	6881361	.	C	T,A	158890	PASS	AB=0.514863,0.365595;ABP=23.1494,1648.49;AC=94,74;AF=0.5,0.393617;AN=188;AO=5411,3837;CIGAR=1X,1X;DP=10506;DPB=10506;DPRA=76.1087,50.5136;EPP=11648.8,8291.58;EPPR=2713.04;GTI=10;LEN=1,1;MEANALT=1.96739,2;MQM=59.9906,59.9917;MQMR=60;NS=94;NUMALT=2;ODDS=1.8867;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=193712,137161;QR=44847;RO=1256;RPL=5400,3832;RPP=11657.5,8291.58;RPPR=2713.04;RPR=11,5;RUN=1,1;SAF=1,0;SAP=11744.2,8334.95;SAR=5410,3837;SRF=0;SRP=2730.38;SRR=1256;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,23,15:0:0:23,15:812,528:-109.46,-43.3359,-36.4122,-66.4767,0,-61.9612	0/1:157:41,79,37:41:1468:79,37:2820,1326:-217.556,0,-95.9344,-121.752,-11.5697,-230.33	1/2:136:0,69,67:0:0:69,67:2468,2398:-397.152,-195.906,-175.135,-201.603,0,-181.434	1/2:223:44,128,51:44:1572:128,51:4600,1828:-382.949,-20.9221,-110.559,-247.104,0,-359.92	1/2:95:0,48,47:0:0:48,47:1716,1684:-277.617,-137.699,-123.249,-140.276,0,-126.128	1/2:32:0,17,15:0:0:17,15:608,540:-93.9969,-44.4211,-39.3036,-49.9345,0,-45.4191	1/2:215:0,130,85:0:0:130,85:4661,3031:-627.589,-247.432,-208.298,-380.515,0,-354.928	1/2:173:0,67,106:0:0:67,106:2400,3787:-504.846,-309.116,-288.947,-196.088,0,-164.179	0/1:97:25,51,21:25:896:51,21:1817,747:-140.575,0,-57.7253,-87.2252,-12.203,-153.981	1/2:116:0,56,60:0:0:56,60:2012,2152:-340.022,-175.885,-159.028,-164.495,0,-146.434	1/2:54:0,24,30:0:0:24,30:857,1072:-157.631,-87.7616,-80.5368,-70.2266,0,-61.1957	1/2:83:18,30,35:18:644:30,35:1080,1256:-132.642,-49.9372,-93.4204,-35.6103,0,-77.5879	0/1:72:14,44,14:14:504:44,14:1565,504:-123.321,0,-27.8785,-86.4106,-2.43205e-07,-123.321	1/2:61:0,30,31:0:0:30,31:1076,1116:-179.182,-91.4198,-82.3889,-88.1216,0,-78.7896	1/2:63:0,38,25:0:0:38,25:1368,882:-183.798,-72.1714,-60.7323,-111.982,0,-104.456	1/2:59:0,24,35:0:0:24,35:864,1252:-172.948,-102.449,-95.2243,-70.8578,0,-60.3218	1/2:70:0,39,31:0:0:39,31:1396,1107:-204.449,-90.6082,-78.8681,-114.198,0,-104.866	1/2:56:13,29,14:13:464:29,14:1044,500:-84.2113,-2.93764,-32.035,-47.3608,0,-80.9728	1/2:23:5,11,7:5:171:11,7:396,252:-37.5079,-6.70145,-17.2611,-18.4511,0,-30.2167	0/1:224:53,119,52:53:1896:119,52:4259,1858:-331.353,0,-118.784,-195.82,-3.11823,-334.772	1/2:158:2,81,75:2:72:81,75:2904,2679:-448.525,-212.543,-194.034,-230.707,0,-214.004	0/1:135:45,60,30:45:1597:60,30:2136,1076:-160.543,0,-112.053,-86.3245,-42.3499,-207.41	1/2:110:15,66,29:15:540:66,29:2368,1036:-229.04,-40.403,-64.5972,-149.089,0,-184.421	1/2:171:40,74,57:40:1440:74,57:2649,2052:-253.914,-49.9361,-145.157,-98.5217,0,-198.86	1/2:106:0,61,45:0:0:61,45:2175,1607:-308.67,-131.373,-113.01,-177.654,0,-164.107	0/1:463:138,189,136:138:4922:189,136:6796,4867:-512.913,0,-344.335,-157.571,-4.34451,-517.86	1/2:236:0,115,121:0:0:115,121:4120,4344:-690.716,-354.709,-320.091,-336.366,0,-299.941	1/2:40:0,18,22:0:0:18,22:648,788:-117.496,-64.6221,-59.2036,-53.2333,0,-46.6107	1/2:369:0,162,207:0:0:162,207:5786,7412:-1076.53,-604.805,-556.038,-472.085,0,-409.772	0/1:168:50,86,32:50:1779:86,32:3092,1148:-237.208,0,-119.095,-158.621,-51.3438,-293.972	1/2:98:0,64,34:0:0:64,34:2300,1201:-285.798,-98.1586,-78.8927,-187.995,0,-177.76	0/1:5:4,1,0:4:135:1,0:36,0:-2.09312,0,-10.9774,-3.29724,-11.2784,-14.2203	1/2:6:0,5,1:0:0:5,1:180,32:-17.6186,-2.89828,-1.39313,-15.0469,0,-14.7459	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	0/1:233:59,124,50:59:2107:124,50:4456,1788:-345.762,0,-134.453,-217.73,-25.9867,-374.458	0/1:283:73,139,71:73:2604:139,71:4948,2533:-381.298,0,-170.434,-196.781,-5.78541,-387.685	1/2:49:0,33,16:0:0:33,16:1182,576:-143.753,-47.3585,-37.4245,-96.754,0,-91.9375	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:184:0,105,79:0:0:105,79:3756,2844:-538.687,-232.416,-200.808,-306.63,0,-282.849	1/2:35:0,26,9:0:0:26,9:932,320:-102.449,-26.4331,-18.6063,-76.3721,0,-73.6628	1/2:185:0,103,82:0:0:103,82:3672,2944:-539.828,-240.509,-209.503,-299.677,0,-274.992	1/2:61:0,30,31:0:0:30,31:1080,1112:-179.183,-91.0594,-82.0285,-88.4823,0,-79.1504	1/2:95:0,53,42:0:0:53,42:1904,1491:-277.167,-121.841,-105.886,-155.683,0,-143.04	1/2:111:25,55,31:25:896:55,31:1976,1095:-169.769,-16.0926,-72.6146,-88.123,0,-151.867	1/2:155:21,100,34:21:717:100,34:3576,1224:-326.973,-41.7106,-69.7807,-233.421,0,-281.364	1/2:292:0,138,154:0:0:138,154:4943,5486:-850.622,-447.508,-405.966,-403.471,0,-357.112	1/2:167:0,86,81:0:0:86,81:3084,2885:-487.043,-235.502,-209.613,-251.899,0,-227.515	1/2:163:39,76,48:39:1404:76,48:2710,1704:-233.444,-24.2754,-115.959,-106.345,0,-206.456	1/2:245:1,135,108:1:36:135,108:4809,3840:-701.659,-309.988,-272.286,-389.03,0,-359.457	0/2:6:3,1,2:3:104:1,2:36,72:-4.97174,-2.93742,-11.0816,0,-5.50247,-7.84115	1/2:176:0,107,69:0:0:107,69:3844,2474:-515.728,-202.142,-169.932,-313.945,0,-293.174	1/2:18:0,11,7:0:0:11,7:396,252:-53.2333,-20.9217,-17.6104,-32.6714,0,-3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chr09	6961131	.	G	A	213653	PASS	AB=0.495389;ABP=4.43209;AC=127;AF=0.682796;AN=186;AO=8350;CIGAR=1X;DP=12257;DPB=12257;DPRA=0;EPP=18134.8;EPPR=8463.07;GTI=0;LEN=1;MEANALT=1.07527;MQM=59.9776;MQMR=59.999;NS=93;NUMALT=1;ODDS=6.27047;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293243;QR=137165;RO=3900;RPL=4728;RPP=321.121;RPPR=190.314;RPR=3622;RUN=1;SAF=4728;SAP=321.121;SAR=3622;SRF=2239;SRP=189.024;SRR=1661;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:29,31:29:1009:31:1058:-77.4605,0,-73.0569	1/1:33:0,33:0:0:33:1159:-104.616,-9.93399,0	1/1:64:0,64:0:0:64:2209:-199.071,-19.2659,0	1/1:245:0,245:0:0:245:8637:-776.399,-73.7524,0	0/1:42:17,25:17:591:25:871:-66.0622,0,-40.872	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:133:1,132:1:36:132:4629:-413.18,-36.4387,0	0/1:156:75,81:75:2680:81:2810:-206.18,0,-194.485	0/1:85:42,43:42:1465:43:1509:-110.515,0,-106.555	0/1:175:76,99:76:2675:99:3457:-258.665,0,-188.314	0/1:122:70,52:70:2431:52:1806:-126.092,0,-182.317	1/1:108:0,108:0:0:108:3784:-340.764,-32.5112,0	0/1:86:50,36:50:1792:36:1271:-88.8035,0,-135.674	0/1:146:73,73:73:2592:73:2540:-184.902,0,-189.58	0/1:136:70,65:70:2452:65:2271:-163.8,0,-180.084	0/1:133:66,67:66:2319:67:2347:-171.451,0,-168.932	0/1:44:17,27:17:595:27:919:-69.7733,0,-40.6314	1/1:31:0,31:0:0:31:1094:-98.7683,-9.33193,0	0/1:36:15,21:15:510:21:728:-55.0034,0,-35.385	0/1:311:150,160:150:5274:160:5631:-413.277,0,-381.162	0/1:291:165,126:165:5803:126:4426:-310.92,0,-434.791	0/1:119:84,35:84:2930:35:1208:-73.1973,0,-228.111	1/1:208:0,208:0:0:208:7361:-662.545,-62.6142,0	0/1:126:71,55:71:2500:55:1959:-138.655,0,-187.325	1/1:80:0,80:0:0:80:2826:-254.58,-24.0824,0	0/1:334:163,171:163:5739:171:5959:-435.885,0,-416.086	1/1:258:3,255:3:104:255:8934:-794.359,-67.9629,0	0/1:93:42,51:42:1462:51:1765:-131.135,0,-103.874	0/1:305:137,168:137:4776:168:5901:-439.392,0,-338.192	0/1:160:67,93:67:2360:93:3284:-247.617,0,-164.493	0/1:185:98,87:98:3452:87:3076:-221.379,0,-255.204	1/1:7:0,7:0:0:7:239:-21.8427,-2.10721,0	0/1:22:6,16:6:201:16:576:-45.5523,0,-11.7944	1/1:9:0,9:0:0:9:309:-28.1416,-2.70927,0	0/1:4:2,2:2:68:2:68:-5.25359,0,-5.25359	0/1:7:3,4:3:108:4:136:-10.4683,0,-7.96796	0/1:426:195,230:195:6842:230:8109:-601.542,0,-487.565	0/1:141:61,80:61:2159:80:2824:-211.955,0,-152.132	0/1:54:33,21:33:1157:21:747:-51.2987,0,-88.1788	.:.:.:.:.:.:.:.	1/1:99:0,99:0:0:99:3498:-315.031,-29.802,0	0/1:66:33,33:33:1172:33:1164:-85.199,0,-85.9195	0/1:209:121,88:121:4264:88:3047:-211.548,0,-321.025	0/1:132:63,69:63:2151:69:2389:-175.53,0,-154.119	0/1:122:56,66:56:1987:66:2299:-170.445,0,-142.378	1/1:178:1,177:1:36:177:6261:-559.991,-49.9851,0	1/1:64:0,64:0:0:64:2242:-202.036,-19.2659,0	1/1:263:1,262:1:36:262:9247:-828.614,-75.5726,0	0/1:183:99,84:99:3466:84:2967:-212.177,0,-257.064	0/1:173:111,62:111:3927:62:2170:-143.486,0,-301.548	1/1:213:1,212:1:36:212:7408:-662.554,-60.5211,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:65:0,65:0:0:65:2259:-203.569,-19.567,0	1/1:103:2,100:2:72:100:3539:-311.915,-24.1612,0	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:246:105,141:105:3709:141:4991:-375.288,0,-259.961	0/1:57:18,39:18:635:39:1351:-104.726,0,-40.3183	0/1:20:7,13:7:248:13:450:-34.8092,0,-16.6436	0/1:42:25,17:25:896:17:600:-41.6859,0,-68.3171	0/1:81:24,57:24:852:57:2024:-158.05,0,-52.617	0/1:176:75,101:75:2636:101:3557:-267.36,0,-184.506	1/1:17:0,17:0:0:17:593:-53.6954,-5.11751,0	0/1:277:141,135:141:5023:135:4778:-346.737,0,-368.772	0/1:332:158,174:158:5540:174:6113:-450.334,0,-398.789	0/1:97:52,45:52:1856:45:1577:-113.019,0,-138.12	1/1:138:0,138:0:0:138:4872:-438.637,-41.5421,0	0/1:323:156,167:156:5491:167:5872:-431.238,0,-397.087	0/1:163:103,60:103:3637:60:2112:-141.279,0,-278.469	1/1:100:0,100:0:0:100:3490:-314.317,-30.103,0	1/1:19:0,19:0:0:19:661:-59.8116,-5.71957,0	0/1:91:54,37:54:1861:37:1316:-91.3481,0,-140.371	0/1:52:30,22:30:1061:22:775:-54.4176,0,-80.1435	1/1:55:0,55:0:0:55:1942:-175.055,-16.5567,0	0/1:47:28,18:28:971:18:640:-43.7223,0,-73.4916	1/1:266:5,261:5:172:261:9218:-813.768,-64.256,0	1/1:296:0,296:0:0:296:10467:-941.956,-89.1049,0	0/1:102:61,41:61:2113:41:1439:-99.1,0,-159.728	0/1:78:33,45:33:1166:45:1569:-118.018,0,-81.7652	1/1:4:0,4:0:0:4:127:-11.7444,-1.20412,0	1/1:149:0,149:0:0:149:5307:-477.767,-44.8535,0	0/1:68:31,37:31:1095:37:1264:-93.5871,0,-78.3891	1/1:383:2,381:2:72:381:13425:-1201.22,-108.458,0	0/1:105:53,52:53:1863:52:1829:-133.282,0,-136.341	1/1:146:0,146:0:0:146:5103:-459.42,-43.9504,0	0/1:112:54,58:54:1907:58:1990:-145.653,0,-138.192	1/1:259:2,256:2:72:256:9065:-808.998,-71.1888,0	0/1:29:17,12:17:603:12:411:-28.588,0,-45.8696	0/1:94:55,39:55:1936:39:1379:-96.1108,0,-146.22	1/1:80:1,79:1:36:79:2698:-239.46,-20.4841,0	1/1:102:0,102:0:0:102:3576:-322.051,-30.7051,0	0/1:194:89,105:89:3104:105:3667:-271.836,0,-221.188	0/1:205:144,61:144:5093:61:2083:-126.026,0,-396.808	1/1:121:0,121:0:0:121:4252:-382.862,-36.4246,0	1/1:262:1,261:1:36:261:9125:-817.646,-75.2716,0
chr09	7064529	.	AGATC	ATATC,AT	501802	PASS	AB=0.618857,0.377309;ABP=1411.17,1503.49;AC=128,60;AF=0.680851,0.319149;AN=188;AO=14401,4341;CIGAR=1M1X3M,1M3D1X;DP=18836;DPB=16242;DPRA=0,0.965754;EPP=31274.4,9429.37;EPPR=5.18177;GTI=0;LEN=1,2;MEANALT=2.48936,2.70312;MQM=59.6463,52.7726;MQMR=56.75;NS=94;NUMALT=2;ODDS=2.68497;PAIRED=0,0;PAIREDR=0;PAO=15.3333,16.3333;PQA=422,458;PQR=0;PRO=3.33333;QA=512380,154657;QR=135;RO=4;RPL=7633,1232;RPP=115.832,1765.36;RPPR=3.0103;RPR=6768,3109;RUN=1,1;SAF=7633,1232;SAP=115.832,1765.36;SAR=6768,3109;SRF=1;SRP=5.18177;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:96:0,69,27:0:0:69,27:2428,960:-275.363,-77.7132,-56.9421,-198.002,0,-189.874	1/1:383:0,382,0:0:0:382,0:13548,0:-1218.56,-114.993,0,-1218.56,-114.993,-1218.56	1/1:324:0,322,0:0:0:322,0:11490,0:-1033.19,-96.9317,0,-1033.19,-96.9317,-1033.19	1/1:374:0,364,4:0:0:364,4:12953,144:-1164.97,-109.575,0,-1153.25,-97.8236,-1152.05	1/2:165:0,131,33:0:0:131,33:4700,1184:-479.347,-96.1562,-56.7212,-383.236,0,-373.302	1/2:129:0,101,28:0:0:101,28:3602,1000:-373.742,-80.4393,-50.0353,-293.655,0,-285.226	1/1:280:1,276,0:1:31:276,0:9831,0:-881.638,-80.5815,0,-881.939,-83.0843,-884.427	1/2:343:0,255,88:0:0:255,88:9018,3110:-983.557,-249.183,-172.42,-734.664,0,-708.174	1/2:167:0,137,29:0:0:137,29:4900,1026:-482.585,-83.0733,-41.8322,-399.649,0,-390.919	1/2:253:0,130,122:0:0:130,122:4630,4351:-730.835,-353.599,-314.465,-377.408,0,-340.682	1/2:131:0,52,78:0:0:52,78:1856,2783:-377.493,-226.199,-210.546,-151.292,0,-127.812	1/1:130:0,130,0:0:0:130,0:4639,0:-417.559,-39.1339,0,-417.559,-39.1339,-417.559	1/2:152:1,101,49:1:32:101,49:3604,1756:-433.006,-139.575,-111.737,-291.184,0,-279	1/2:145:0,99,46:0:0:99,46:3468,1620:-412.462,-130.738,-100.936,-282.073,0,-268.225	1/2:99:0,52,47:0:0:52,47:1840,1684:-286.595,-136.736,-121.082,-150.214,0,-136.066	1/2:95:0,63,31:0:0:63,31:2238,1108:-272.017,-89.7988,-70.8339,-182.214,0,-172.882	1/2:166:1,128,37:1:36:128,37:4556,1317:-473.557,-102.822,-67.2281,-368.091,0,-359.89	1/1:102:0,101,0:0:0:101,0:3616,0:-325.082,-30.404,0,-325.082,-30.404,-325.082	1/2:104:0,78,26:0:0:78,26:2800,932:-303.214,-75.1495,-51.6692,-228.419,0,-220.592	1/2:439:0,246,191:0:0:246,191:8750,6840:-1269.4,-556.492,-482.439,-712.922,0,-655.426	1/2:325:0,234,90:0:0:234,90:8352,3212:-940.847,-260.297,-189.856,-680.476,0,-653.384	1/2:181:0,76,102:0:0:76,102:2695,3627:-514.762,-295.199,-272.321,-219.557,0,-188.852	1/1:129:0,127,0:0:0:127,0:4512,0:-405.699,-38.2308,0,-405.699,-38.2308,-405.699	1/2:348:0,269,78:0:0:269,78:9593,2753:-1004.37,-222.648,-141.671,-781.71,0,-758.229	1/1:177:0,176,0:0:0:176,0:6265,0:-563.428,-52.9813,0,-563.428,-52.9813,-563.428	1/2:634:0,340,291:0:0:340,291:12106,10399:-1831.22,-844.588,-742.238,-986.677,0,-899.077	1/1:511:0,508,0:0:0:508,0:18063,0:-1624.51,-152.923,0,-1624.51,-152.923,-1624.51	1/2:69:0,46,22:0:0:46,22:1656,788:-199.163,-64.0449,-50.1976,-135.201,0,-128.578	1/2:668:0,398,268:0:0:398,268:14177,9515:-1929.55,-774.227,-654.417,-1155.35,0,-1074.67	1/2:230:0,174,56:0:0:174,56:6180,1996:-664.948,-161.67,-109.291,-503.632,0,-486.774	1/2:210:0,123,86:0:0:123,86:4400,3088:-610.315,-251.582,-214.555,-358.829,0,-332.941	1/1:19:0,19,0:0:0:19,0:672,0:-60.8068,-5.71957,0,-60.8068,-5.71957,-60.8068	1/2:45:0,33,12:0:0:33,12:1171,428:-130.489,-35.0849,-25.1509,-95.7589,0,-92.1466	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/2:25:0,15,10:0:0:15,10:525,356:-71.8654,-29.1583,-24.6429,-43.0591,0,-40.0488	1/2:39:0,25,14:0:0:25,14:896,500:-113.338,-40.2678,-32.7421,-73.423,0,-69.2086	1/2:345:0,178,165:0:0:178,165:6329,5907:-996.089,-480.34,-426.757,-515.75,0,-466.08	1/2:331:0,252,79:0:0:252,79:8944,2819:-954.295,-225.729,-149.869,-728.558,0,-704.777	1/2:174:0,108,66:0:0:108,66:3864,2351:-504.863,-189.916,-157.405,-315.301,0,-295.433	1/2:15:0,6,9:0:0:6,9:210,324:-43.5357,-26.4559,-24.6497,-17.432,0,-14.7227	1/1:333:0,331,0:0:0:331,0:11790,0:-1060.18,-99.6409,0,-1060.18,-99.6409,-1060.18	1/2:62:0,38,23:0:0:38,23:1340,812:-174.912,-65.8339,-54.3948,-109.07,0,-102.147	1/2:323:0,252,70:0:0:252,70:8939,2490:-929.26,-201.306,-125.446,-727.947,0,-706.875	1/2:109:1,59,49:1:36:59,49:2112,1744:-310.913,-138.988,-124.165,-169.285,0,-157.472	1/2:93:0,52,41:0:0:52,41:1829,1456:-267.383,-118.5,-102.847,-149.235,0,-136.893	1/1:242:0,242,0:0:0:242,0:8588,0:-772.907,-72.8493,0,-772.907,-72.8493,-772.907	1/1:281:0,276,1:0:0:276,1:9857,36:-886.647,-83.0843,0,-883.732,-80.1553,-883.431	1/1:314:0,306,5:0:0:306,5:10919,180:-982.2,-92.1152,0,-967.537,-77.3771,-966.032	1/2:158:0,74,84:0:0:74,84:2640,3008:-460.158,-244.957,-222.68,-215.499,0,-190.212	1/2:283:0,165,118:0:0:165,118:5829,4208:-816.374,-341.686,-292.016,-474.983,0,-439.461	1/1:389:0,385,0:0:0:385,0:13619,0:-1225.13,-115.897,0,-1225.13,-115.897,-1225.13	1/2:34:0,18,16:0:0:18,16:644,564:-98.5582,-46.0434,-40.6248,-52.8688,0,-48.0523	1/1:293:0,293,0:0:0:293,0:10450,0:-940.247,-88.2018,0,-940.247,-88.2018,-940.247	1/1:117:0,117,0:0:0:117,0:4158,0:-374.348,-35.2205,0,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chr09	7064539	.	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chr09	7064549	.	T	C	139710	PASS	AB=0.501769;ABP=3.17932;AC=128;AF=0.680851;AN=188;AO=6750;CIGAR=1X;DP=9861;DPB=9861;DPRA=0;EPP=13990.8;EPPR=6575;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.3993;MQMR=50.159;NS=94;NUMALT=1;ODDS=7.33791;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240770;QR=111085;RO=3106;RPL=6673;RPP=13999.3;RPPR=6575;RPR=77;RUN=1;SAF=1;SAP=14651.8;SAR=6749;SRF=0;SRP=6747.6;SRR=3106;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:26,24:26:907:24:860:-62.6703,0,-66.0995	1/1:166:0,166:0:0:166:5949:-535.245,-49.971,0	1/1:179:0,178:0:0:178:6353:-571.108,-53.5833,0	1/1:161:4,156:4:144:156:5578:-488.386,-35.2443,0	0/1:58:34,24:34:1220:24:852:-59.3951,0,-92.1631	0/1:58:25,33:25:900:33:1169:-87.5762,0,-62.168	1/1:111:0,111:0:0:111:3958:-356.382,-33.4143,0	0/1:189:86,103:86:3068:103:3665:-273.041,0,-214.537	0/1:56:29,27:29:1036:27:966:-70.3582,0,-76.0661	0/1:149:90,58:90:3182:58:2084:-142.807,0,-240.834	0/1:110:66,44:66:2376:44:1555:-107.099,0,-180.237	1/1:77:0,77:0:0:77:2735:-246.278,-23.1793,0	0/1:78:47,31:47:1688:31:1099:-75.6089,0,-127.664	0/1:98:46,52:46:1652:52:1832:-135.073,0,-117.899	0/1:49:26,23:26:936:23:820:-59.3688,0,-68.8706	0/1:52:33,19:33:1180:19:684:-46.2092,0,-90.0724	0/1:103:39,64:39:1396:64:2272:-173.481,0,-93.1066	1/1:66:0,66:0:0:66:2364:-212.934,-19.868,0	0/1:69:25,44:25:896:44:1584:-122.039,0,-59.0227	0/1:207:102,105:102:3656:105:3738:-274.246,0,-265.563	0/1:171:88,83:88:3156:83:2942:-213.424,0,-231.358	0/1:60:33,27:33:1180:27:972:-69.7361,0,-87.9751	1/1:34:0,34:0:0:34:1177:-106.224,-10.235,0	0/1:179:77,102:77:2756:102:3616:-271.544,0,-192.75	1/1:92:0,92:0:0:92:3283:-295.592,-27.6948,0	0/1:338:155,183:155:5524:183:6528:-485.676,0,-393.117	1/1:252:0,252:0:0:252:9016:-811.317,-75.8596,0	0/1:41:25,16:25:900:16:572:-39.463,0,-68.4118	0/1:261:119,142:119:4248:142:5084:-378.862,0,-302.93	0/1:135:56,79:56:2008:79:2817:-212.514,0,-138.944	0/1:67:34,33:34:1224:33:1158:-84.3455,0,-89.8733	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:42:14,28:14:504:28:1000:-77.6584,0,-32.8714	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:21:9,12:9:320:12:420:-31.8078,0,-22.6305	0/1:27:14,13:14:500:13:464:-33.9581,0,-36.0673	0/1:202:99,103:99:3556:103:3679:-270.491,0,-258.055	0/1:180:81,99:81:2885:99:3518:-262.584,0,-201.598	0/1:117:65,52:65:2332:52:1859:-132.286,0,-172.823	0/1:15:9,6:9:320:6:216:-15.2611,0,-24.2945	1/1:122:1,121:1:36:121:4325:-385.409,-33.1274,0	0/1:38:23,15:23:824:15:532:-36.7463,0,-62.7357	0/1:139:69,70:69:2460:70:2482:-181.759,0,-178.375	0/1:47:18,29:18:644:29:1040:-79.766,0,-43.9254	0/1:53:24,29:24:864:29:1035:-77.5085,0,-61.6322	1/1:121:0,121:0:0:121:4327:-389.591,-36.4246,0	1/1:151:1,150:1:36:150:5363:-478.6,-41.8821,0	1/1:177:3,174:3:108:174:6231:-550.631,-43.2325,0	0/1:113:57,56:57:2027:56:1996:-145.886,0,-148.17	0/1:167:71,96:71:2535:96:3428:-258.458,0,-176.065	1/1:150:0,150:0:0:150:5364:-482.87,-45.1545,0	0/1:25:11,14:11:392:14:496:-37.4403,0,-27.8582	1/1:158:0,158:0:0:158:5648:-508.308,-47.5627,0	1/1:48:0,48:0:0:48:1716:-154.696,-14.4494,0	0/1:40:27,13:27:964:13:468:-30.4184,0,-74.3487	0/1:119:47,72:47:1684:72:2568:-195.546,0,-114.933	0/1:17:4,13:4:144:13:460:-36.6179,0,-8.16264	0/1:18:11,7:11:381:7:252:-17.6104,0,-29.1247	0/1:38:18,20:18:640:20:703:-52.1034,0,-46.3107	0/1:77:38,39:38:1356:39:1400:-103.079,0,-97.2816	0/1:168:81,87:81:2912:87:3094:-228.071,0,-210.296	1/1:19:0,19:0:0:19:684:-61.8399,-5.71957,0	0/1:122:62,60:62:2220:60:2144:-156.492,0,-162.633	0/1:195:102,93:102:3656:93:3305:-238.729,0,-269.489	0/1:88:39,49:39:1396:49:1746:-130.636,0,-98.0737	1/1:95:0,95:0:0:95:3395:-305.732,-28.5979,0	0/1:138:60,78:60:2148:78:2764:-207.365,0,-150.799	0/1:174:131,43:131:4680:43:1536:-86.1457,0,-366.97	1/1:65:0,65:0:0:65:2297:-206.944,-19.567,0	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	0/1:94:49,45:49:1735:45:1608:-116.709,0,-127.551	0/1:38:18,20:18:644:20:716:-53.3286,0,-46.3319	1/1:72:0,72:0:0:72:2556:-230.149,-21.6742,0	0/1:58:32,26:32:1148:26:917:-65.1672,0,-84.8744	1/1:98:0,98:0:0:98:3479:-313.24,-29.5009,0	1/1:196:0,196:0:0:196:7006:-630.425,-59.0019,0	0/1:159:82,77:82:2936:77:2756:-200.33,0,-213.894	0/1:232:114,118:114:4069:118:4210:-308.98,0,-292.743	1/1:27:0,27:0:0:27:961:-86.4244,-8.12781,0	1/1:131:0,131:0:0:131:4678:-421.096,-39.4349,0	0/1:135:75,60:75:2680:60:2136:-151.687,0,-198.767	1/1:198:0,197:0:0:197:7023:-631.578,-59.3029,0	0/1:93:43,50:43:1532:50:1796:-133.905,0,-109.35	1/1:56:0,56:0:0:56:1978:-178.293,-16.8577,0	0/1:84:45,39:45:1616:39:1390:-100.076,0,-119.851	1/1:142:1,141:1:36:141:5072:-452.989,-39.157,0	0/1:42:19,22:19:684:22:783:-57.1273,0,-48.542	0/1:89:40,49:40:1436:49:1730:-129.188,0,-101.644	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	1/1:77:0,77:0:0:77:2755:-248.105,-23.1793,0	0/1:153:75,78:75:2692:78:2784:-204.655,0,-194.709	0/1:83:59,24:59:2120:24:864:-53.0971,0,-165.26	1/1:119:0,119:0:0:119:4204:-378.426,-35.8226,0	1/1:98:0,98:0:0:98:3506:-315.681,-29.5009,0
chr09	7064558	.	TGAAG	CGAAG,CGAAT	208656	PASS	AB=0.492964,0.501186;ABP=5.7297,3.08755;AC=128,60;AF=0.680851,0.319149;AN=188;AO=6749,3179;CIGAR=1X4M,1X3M1X;DP=9977;DPB=9977;DPRA=0,1.0824;EPP=14554.2,6819.54;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=2.12766,2.48438;MQM=59.4273,50.1183;MQMR=60;NS=94;NUMALT=2;ODDS=11.5615;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=240784,112176;QR=36;RO=1;RPL=6737,3169;RPP=14554.2,6819.54;RPPR=5.18177;RPR=12,10;RUN=1,1;SAF=0,0;SAP=14658.3,6906.12;SAR=6749,3179;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:52:0,25,27:0:0:25,27:900,937:-149.132,-75.689,-68.1632,-73.7953,0,-65.6675	1/1:167:0,166,0:0:0:166,0:5938,0:-533.903,-49.971,0,-533.903,-49.971,-533.903	1/1:180:0,180,0:0:0:180,0:6416,0:-577.158,-54.1854,0,-577.158,-54.1854,-577.158	1/1:164:0,160,4:0:0:160,4:5735,144:-515.583,-48.1648,0,-503.865,-36.0888,-502.661	1/2:58:0,23,34:0:0:23,34:805,1215:-163.804,-98.5969,-91.6732,-65.1992,0,-54.9641	1/2:60:0,30,28:0:0:30,28:1076,979:-166.322,-78.5534,-69.5225,-87.8018,0,-79.373	1/1:111:0,109,0:0:0:109,0:3889,0:-349.825,-32.8123,0,-349.825,-32.8123,-349.825	1/2:193:0,102,90:0:0:102,90:3650,3158:-550.375,-253.1,-222.395,-297.27,0,-270.178	1/2:55:0,26,29:0:0:26,29:924,1031:-159.016,-83.7606,-75.9338,-75.6098,0,-66.8799	1/2:149:0,58,91:0:0:58,91:2051,3197:-426.825,-259.829,-242.369,-167.349,0,-139.955	1/2:110:0,42,67:0:0:42,67:1500,2381:-315.583,-193.321,-180.678,-122.258,0,-102.089	1/1:75:0,75,0:0:0:75,0:2671,0:-240.52,-22.5773,0,-240.52,-22.5773,-240.52	1/2:84:0,32,51:0:0:32,51:1152,1779:-237.585,-143.684,-134.051,-93.9169,0,-78.5644	1/2:99:0,51,48:0:0:51,48:1812,1699:-284.469,-137.363,-122.011,-147.458,0,-133.008	1/2:51:0,24,27:0:0:24,27:860,966:-148.33,-78.1927,-70.968,-70.4938,0,-62.366	1/2:54:0,20,34:0:0:20,34:704,1201:-154.42,-97.4044,-91.3838,-57.3656,0,-47.1305	1/2:103:0,62,40:0:0:62,40:2202,1403:-292.351,-112.997,-94.3331,-179.453,0,-167.412	1/1:66:0,66,0:0:0:66,0:2359,0:-212.484,-19.868,0,-212.484,-19.868,-212.484	1/2:69:0,43,26:0:0:43,26:1536,923:-199.587,-74.3843,-61.44,-125.555,0,-117.729	1/2:213:0,106,105:0:0:106,105:3756,3706:-606.48,-300.587,-268.677,-305.956,0,-274.348	1/2:175:0,82,91:0:0:82,91:2916,3196:-496.316,-258.777,-234.092,-237.572,0,-210.178	1/2:61:0,27,34:0:0:27,34:964,1205:-176.734,-98.1398,-90.012,-78.949,0,-68.714	1/1:33:0,33,0:0:0:33,0:1180,0:-106.5,-9.93399,0,-106.5,-9.93399,-106.5	1/2:183:0,103,80:0:0:103,80:3668,2798:-525.283,-226.538,-195.532,-299.097,0,-275.014	1/1:92:0,91,0:0:0:91,0:3249,0:-292.262,-27.3937,0,-292.262,-27.3937,-292.262	1/2:343:0,184,157:0:0:184,157:6592,5538:-986.954,-449.51,-394.121,-537.448,0,-490.187	1/1:254:0,253,0:0:0:253,0:9047,0:-813.727,-76.1606,0,-813.727,-76.1606,-813.727	1/2:41:0,16,25:0:0:16,25:576,863:-116.944,-69.9472,-65.1308,-47.3503,0,-39.8246	1/2:264:0,143,119:0:0:143,119:5124,4203:-759.187,-341.484,-298.437,-417.706,0,-381.884	1/2:137:0,80,56:0:0:80,56:2843,1990:-392.231,-160.93,-136.848,-231.402,0,-214.544	1/2:69:0,35,34:0:0:35,34:1248,1201:-199.484,-97.7613,-87.2253,-102.076,0,-91.8414	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:42:0,28,14:0:0:28,14:1000,491:-121.656,-40.1349,-31.7061,-81.8728,0,-77.6584	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/2:22:0,12,10:0:0:12,10:428,354:-63.8667,-28.9832,-25.3708,-35.2373,0,-32.227	1/2:29:0,14,15:0:0:14,15:496,523:-82.224,-41.8403,-37.6259,-40.7313,0,-36.2158	1/2:202:0,103,99:0:0:103,99:3695,3542:-588.999,-287.626,-256.619,-301.73,0,-271.929	1/2:183:0,100,80:0:0:100,80:3565,2809:-515.826,-225.296,-195.193,-290.521,0,-266.439	1/2:119:0,53,66:0:0:53,66:1892,2328:-342.124,-187.971,-172.016,-154.507,0,-134.639	1/2:15:0,6,9:0:0:6,9:216,324:-44.0683,-26.4559,-24.6497,-17.9704,0,-15.2611	1/1:121:0,119,0:0:0:119,0:4235,0:-380.614,-35.8226,0,-380.614,-35.8226,-380.614	1/2:37:0,14,23:0:0:14,23:496,810:-106.39,-66.01,-61.7956,-40.7322,0,-33.8085	1/2:143:0,71,72:0:0:71,72:2531,2528:-410.843,-204.583,-183.209,-206.613,0,-184.939	1/2:51:0,32,19:0:0:32,19:1144,666:-147.611,-54.328,-44.695,-93.6357,0,-87.9161	1/2:54:0,29,25:0:0:29,25:1040,887:-156.99,-72.161,-63.4311,-85.1845,0,-77.6587	1/1:119:0,117,0:0:0:117,0:4183,0:-376.286,-35.2205,0,-376.286,-35.2205,-376.286	1/1:153:0,151,1:0:0:151,1:5372,36:-482.861,-45.4555,0,-479.946,-42.5401,-479.645	1/1:174:0,171,3:0:0:171,3:6111,90:-549.779,-51.4761,0,-542.595,-43.9911,-541.691	1/2:114:0,53,60:0:0:53,60:1900,2125:-327.557,-172.597,-156.642,-155.073,0,-137.011	1/2:169:0,96,73:0:0:96,73:3419,2575:-487.07,-208.398,-179.499,-279.025,0,-257.049	1/1:151:0,151,0:0:0:151,0:5379,0:-484.221,-45.4555,0,-484.221,-45.4555,-484.221	1/2:25:0,14,11:0:0:14,11:500,394:-73.0148,-32.2526,-28.0381,-41.1185,0,-37.8071	1/1:158:0,158,0:0:0:158,0:5648,0:-508.315,-47.5627,0,-508.315,-47.5627,-508.315	1/1:49:0,49,0:0:0:49,0:1748,0:-157.575,-14.7505,0,-157.575,-14.7505,-157.575	1/2:42:0,13,29:0:0:13,29:468,1011:-120.081,-81.8898,-77.9764,-38.5463,0,-29.8164	1/2:119:0,70,49:0:0:70,49:2512,1684:-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chr09	7142296	.	C	T	86071.3	PASS	AB=0.500324;ABP=3.01733;AC=60;AF=0.319149;AN=188;AO=3881;CIGAR=1X;DP=12108;DPB=12108;DPRA=1.33946;EPP=8413.13;EPPR=17830.8;GTI=0;LEN=1;MEANALT=1.07042;MQM=59.8907;MQMR=59.9838;NS=94;NUMALT=1;ODDS=11.4069;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138386;QR=293114;RO=8222;RPL=2668;RPP=1187.51;RPPR=2148.2;RPR=1213;RUN=1;SAF=2668;SAP=1187.51;SAR=1213;SRF=5537;SRP=2151.22;SRR=2685;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:17,24:17:593:24:860:-65.3796,0,-41.3525	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.877	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/0:103:101,2:101:3615:2:72:0,-24.1694,-318.718	0/1:35:14,21:14:504:21:741:-56.4755,0,-35.162	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/1:74:40,34:40:1428:34:1211:-87.015,0,-106.541	0/1:76:38,38:38:1360:38:1368:-100.542,0,-99.8223	0/1:39:16,23:16:576:23:812:-61.6607,0,-40.4348	0/1:311:168,143:168:5969:143:5101:-365.613,0,-443.684	0/0:112:112,0:112:3963:0:0:0,-33.7154,-356.853	0/1:130:77,53:77:2734:53:1908:-132.863,0,-207.168	0/1:125:57,68:57:1997:68:2440:-182.226,0,-142.371	0/1:116:62,54:62:2216:54:1936:-139.597,0,-164.785	0/1:113:57,56:57:2048:56:1996:-145.898,0,-150.575	0/1:82:45,37:45:1600:37:1311:-93.6024,0,-119.606	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/1:187:101,86:101:3602:86:3051:-218.508,0,-268.093	0/1:75:41,34:41:1464:34:1216:-87.166,0,-109.479	0/1:77:37,40:37:1332:40:1432:-105.98,0,-97.0031	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.113	0/1:62:28,34:28:1000:34:1220:-91.4429,0,-71.6515	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:133:69,64:69:2461:64:2277:-165.154,0,-181.706	0/0:146:145,1:145:5187:1:36:0,-40.3521,-463.371	0/1:49:23,26:23:828:26:932:-69.4484,0,-60.0936	0/1:103:47,56:47:1671:56:2012:-150.329,0,-119.67	0/1:62:34,28:34:1220:28:1004:-72.012,0,-91.4429	0/1:76:40,36:40:1432:36:1266:-91.3533,0,-106.299	0/0:259:259,0:259:9217:0:0:0,-77.9668,-829.499	0/1:309:133,176:133:4771:176:6261:-470.422,0,-336.527	0/0:281:280,1:280:9907:1:36:0,-80.9912,-887.979	0/1:585:309,276:309:11006:276:9828:-708.052,0,-814.33	0/1:412:201,211:201:7179:211:7514:-552.279,0,-522.132	0/1:294:143,151:143:5111:151:5389:-396.638,0,-371.63	0/1:52:35,17:35:1251:17:608:-39.3985,0,-97.2407	0/1:269:144,125:144:5121:125:4406:-315.696,0,-380.047	0/1:190:74,116:74:2641:116:4168:-318.105,0,-180.74	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:171:81,90:81:2908:90:3224:-238.906,0,-210.434	0/1:97:55,42:55:1972:42:1504:-106.455,0,-148.555	0/1:115:53,62:53:1887:62:2213:-164.78,0,-135.489	0/1:91:46,45:46:1647:45:1598:-116.716,0,-121.124	0/0:50:49,1:49:1756:1:32:0,-11.8522,-155.125	0/0:80:78,2:78:2779:2:72:0,-17.2457,-243.514	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:31:13,18:13:451:18:639:-48.5063,0,-31.5879	0/1:59:38,21:38:1356:21:750:-50.063,0,-104.579	0/0:47:46,1:46:1643:1:36:0,-10.5501,-144.56	0/1:233:102,131:102:3610:131:4676:-350.852,0,-254.966	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:36:34,2:34:1220:2:72:0,-4.00036,-103.27	0/1:65:32,33:32:1139:33:1178:-86.5708,0,-83.2514	0/1:63:37,26:37:1332:26:924:-64.5128,0,-101.217	0/1:39:19,20:19:676:20:720:-53.3886,0,-49.4278	0/1:212:114,97:114:4068:97:3472:-248.932,0,-302.547	0/1:121:60,61:60:2125:61:2173:-159.41,0,-155.092	0/1:62:37,25:37:1328:25:888:-61.5752,0,-101.158	0/1:139:81,58:81:2871:58:2080:-145.627,0,-216.782	0/0:121:119,1:119:4251:1:36:0,-32.8652,-379.191	0/1:94:61,33:61:2192:33:1184:-78.5669,0,-169.249	0/1:84:41,43:41:1441:43:1540:-113.607,0,-104.697	0/1:27:14,13:14:504:13:464:-33.9697,0,-37.5703	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:101:51,50:51:1817:50:1779:-129.988,0,-133.405	0/1:70:19,51:19:680:51:1803:-141.467,0,-40.4571	0/0:433:430,2:430:15312:2:68:0,-123.94,-1371.33	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:142:73,68:73:2624:68:2415:-174.8,0,-193.602	0/1:93:44,49:44:1567:49:1729:-127.89,0,-113.325	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:32:9,23:9:324:23:820:-64.4896,0,-19.8729	0/0:87:87,0:87:3090:0:0:0,-26.1896,-278.326	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:78:38,40:38:1341:40:1432:-105.696,0,-97.4029	0/1:52:33,19:33:1180:19:661:-44.1581,0,-90.8545	0/0:211:211,0:211:7501:0:0:0,-63.5173,-675.135	0/0:53:53,0:53:1874:0:0:0,-15.9546,-168.935	0/1:63:29,34:29:1032:34:1205:-89.7881,0,-74.2286	0/0:150:149,1:149:5321:1:36:0,-41.5562,-475.425	0/1:98:38,60:38:1364:60:2140:-163.367,0,-93.5598	0/0:161:161,0:161:5705:0:0:0,-48.4658,-513.568	0/1:139:62,77:62:2170:77:2752:-206.079,0,-153.721	0/0:212:212,0:212:7575:0:0:0,-63.8184,-681.788	0/1:49:26,23:26:924:23:824:-59.731,0,-68.7272	0/1:122:68,54:68:2444:54:1932:-137.426,0,-183.489	0/0:119:119,0:119:4238:0:0:0,-35.8226,-381.6	0/0:576:575,1:575:20498:1:36:0,-169.795,-1840.72	0/1:764:374,389:374:13335:389:13851:-1016.45,0,-970.031	0/1:109:37,72:37:1307:72:2584:-199.997,0,-85.1185	0/0:129:129,0:129:4612:0:0:0,-38.8329,-415.245	0/0:180:180,0:180:6406:0:0:0,-54.1854,-576.62
chr09	7607800	.	G	A	36645.1	PASS	AB=0.544542;ABP=69.9413;AC=59;AF=0.31383;AN=188;AO=2120;CIGAR=1X;DP=6392;DPB=6392;DPRA=1.05065;EPP=4606.53;EPPR=9277.37;GTI=0;LEN=1;MEANALT=1.01562;MQM=59.958;MQMR=59.9948;NS=94;NUMALT=1;ODDS=1.07389;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75877;QR=152576;RO=4271;RPL=2120;RPP=4606.53;RPPR=9277.37;RPR=0;RUN=1;SAF=2120;SAP=4606.53;SAR=0;SRF=4271;SRP=9277.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:10,16:10:360:16:559:-42.8108,0,-24.9175	0/0:83:83,0:83:2945:0:0:0,-24.9855,-265.281	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.452	0/0:164:163,1:163:5827:1:36:0,-45.7706,-520.945	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:26:11,15:11:392:15:540:-41.1098,0,-27.7933	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.889	0/1:77:36,41:36:1296:41:1454:-107.938,0,-93.7646	0/1:80:33,47:33:1184:47:1680:-127.405,0,-82.7859	0/1:72:35,37:35:1260:37:1328:-98.1481,0,-92.0313	0/1:22:9,13:9:320:13:468:-35.8346,0,-22.5197	0/0:79:79,0:79:2787:0:0:0,-23.7814,-251.07	0/1:70:29,41:29:1040:41:1472:-111.704,0,-72.8423	0/1:49:27,22:27:955:22:784:-56.1334,0,-71.5144	0/1:65:30,35:30:1076:35:1256:-93.7783,0,-77.5859	0/1:47:25,22:25:900:22:776:-56.0137,0,-67.1726	0/1:43:28,15:28:1004:15:536:-35.6305,0,-77.7316	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/1:35:18,17:18:632:17:612:-44.8774,0,-46.6707	0/1:157:80,77:80:2852:77:2764:-201.739,0,-209.657	0/1:176:79,97:79:2836:97:3492:-261.508,0,-202.497	0/1:70:27,43:27:972:43:1529:-116.829,0,-66.7258	0/0:80:79,1:79:2819:1:36:0,-20.4841,-250.351	0/1:84:39,45:39:1381:45:1616:-120.443,0,-99.3002	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:144:72,72:72:2588:72:2569:-188.11,0,-189.82	0/0:60:60,0:60:2127:0:0:0,-18.0618,-191.698	0/1:29:12,17:12:428:17:612:-46.6836,0,-30.1289	0/1:134:64,70:64:2276:70:2500:-184.913,0,-164.762	0/1:121:56,65:56:2012:65:2328:-173.355,0,-144.928	0/1:117:58,59:58:2076:59:2091:-153.238,0,-151.89	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:145:67,78:67:2408:78:2804:-208.95,0,-173.327	0/1:107:46,61:46:1648:61:2192:-165.335,0,-116.395	0/1:36:12,24:12:428:24:860:-66.8848,0,-28.0217	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.61	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:62:17,45:17:612:45:1616:-127.066,0,-36.7496	0/1:44:15,29:15:521:29:1040:-80.669,0,-33.971	0/1:51:24,27:24:860:27:963:-71.6334,0,-62.3693	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:54:54,0:54:1935:0:0:0,-16.2556,-174.426	0/0:128:128,0:128:4549:0:0:0,-38.5318,-409.576	0/1:93:41,52:41:1464:52:1868:-140.403,0,-104.06	0/1:83:44,39:44:1580:39:1388:-100.233,0,-117.506	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:12:4,8:4:144:8:273:-21.2878,0,-9.70126	0/0:91:90,1:90:3203:1:36:0,-23.7955,-284.896	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.526	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:96:38,58:38:1360:58:2080:-158.571,0,-93.8017	0/1:31:14,17:14:500:17:593:-44.3628,0,-36.0042	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	0/1:63:33,30:33:1184:30:1076:-78.188,0,-87.9034	0/1:90:46,44:46:1636:44:1580:-115.397,0,-120.436	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:155:67,87:67:2412:87:3099:-232.42,0,-170.617	0/1:113:61,52:61:2192:52:1857:-133.389,0,-163.529	0/1:58:28,30:28:985:30:1065:-78.7,0,-71.5018	0/0:52:52,0:52:1839:0:0:0,-15.6536,-165.79	0/1:122:48,74:48:1716:74:2660:-202.92,0,-118	0/1:115:23,92:23:824:92:3300:-262.6,0,-39.8649	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3501	0/1:36:19,17:19:684:17:612:-44.5764,0,-51.0532	0/0:64:63,1:63:2260:1:36:0,-15.6676,-200.064	0/1:93:42,51:42:1491:51:1824:-136.255,0,-106.488	0/0:135:135,0:135:4832:0:0:0,-40.639,-435.035	0/0:137:136,1:136:4837:1:36:0,-37.6428,-431.885	0/1:50:19,31:19:680:31:1116:-85.3822,0,-46.4777	0/1:70:39,31:39:1404:31:1112:-79.3192,0,-105.587	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/1:113:45,68:45:1607:68:2440:-185.835,0,-110.903	0/0:179:179,0:179:6420:0:0:0,-53.8844,-577.886	0/1:52:27,25:27:963:25:900:-65.6675,0,-71.3324	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:36:20,16:20:708:16:576:-41.3379,0,-53.2085	0/0:102:102,0:102:3626:0:0:0,-30.7051,-326.546	0/1:19:7,12:7:248:12:432:-33.5016,0,-16.9446	0/1:43:25,18:25:883:18:648:-45.7076,0,-66.8432	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:75:30,45:30:1072:45:1612:-122.793,0,-74.2152	0/1:66:22,44:22:788:44:1561:-120.912,0,-51.3768	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.03	0/0:109:109,0:109:3867:0:0:0,-32.8123,-348.225
chr09	7607848	.	AAACA	CAACA,CAACC	119510	PASS	AB=0.448189,0.549284;ABP=86.0403,78.1374;AC=121,61;AF=0.664835,0.335165;AN=182;AO=3778,1978;CIGAR=1X4M,1X3M1X;DP=5777;DPB=5777;DPRA=64.1778,0.904838;EPP=8206.83,4298.18;EPPR=7.35324;GTI=2;LEN=1,5;MEANALT=1.91111,2.15625;MQM=59.3163,52.1304;MQMR=57.5;NS=91;NUMALT=2;ODDS=2.25272;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=134403,69495;QR=57;RO=2;RPL=0,0;RPP=8206.83,4298.18;RPPR=7.35324;RPR=3778,1978;RUN=1,1;SAF=0,0;SAP=8206.83,4298.18;SAR=3778,1978;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:17:0,11,6:0:0:11,6:396,215:-50.1789,-17.8659,-14.5546,-32.6714,0,-30.8652	1/1:41:0,37,3:0:0:37,3:1324,107:-119.049,-11.1381,0,-110.339,-2.43123,-109.436	1/1:73:0,71,2:0:0:71,2:2510,69:-225.792,-21.3731,0,-220.194,-15.4299,-219.592	1/1:107:0,107,0:0:0:107,0:3828,0:-344.486,-32.2102,0,-344.486,-32.2102,-344.486	1/2:12:0,5,7:0:0:5,7:172,246:-34.3024,-20.3363,-18.8311,-14.3128,0,-12.2056	2/2:14:0,1,13:0:0:1,13:36,465:-40.8298,-37.8917,-37.5906,-3.91339,-0.616145,0	1/1:103:0,102,1:0:0:102,1:3648,26:-328.084,-30.7051,0,-326.047,-28.4072,-325.746	1/2:54:0,16,38:0:0:16,38:567,1333:-154.479,-108.332,-103.516,-46.4992,0,-35.06	1/2:68:0,33,35:0:0:33,35:1163,1218:-193.802,-99.1845,-89.2506,-94.9676,0,-84.4316	1/2:82:0,50,32:0:0:50,32:1773,1135:-236.989,-92.5519,-77.5004,-144.791,0,-135.158	1/2:63:0,26,37:0:0:26,37:928,1302:-181.54,-105.901,-98.0743,-75.9929,0,-64.8548	1/1:83:0,83,0:0:0:83,0:2933,0:-263.857,-24.9855,0,-263.857,-24.9855,-263.857	1/2:70:0,35,34:0:0:35,34:1247,1202:-199.352,-97.7313,-87.1953,-101.721,0,-91.4859	1/2:57:0,28,28:0:0:28,28:991,984:-160.508,-79.7855,-71.3567,-80.7162,0,-72.2874	1/2:60:0,29,31:0:0:29,31:1040,1096:-174.218,-89.39,-80.6601,-85.1832,0,-75.8512	1/2:59:0,32,27:0:0:32,27:1125,940:-167.935,-76.4903,-66.8573,-91.7936,0,-83.6658	1/2:44:0,17,26:0:0:17,26:608,923:-124.483,-74.9649,-69.8474,-49.5152,0,-41.6884	1/1:46:0,46,0:0:0:46,0:1618,0:-145.743,-13.8474,0,-145.743,-13.8474,-145.743	1/2:28:0,7,21:0:0:7,21:252,749:-81.6926,-61.1295,-59.0223,-20.9217,0,-14.6001	1/2:133:0,52,81:0:0:52,81:1856,2836:-381.139,-229.878,-214.225,-151.613,0,-127.23	1/2:126:0,59,67:0:0:59,67:2109,2335:-361.234,-189.583,-171.823,-172.003,0,-151.834	1/2:50:0,24,26:0:0:24,26:856,922:-145.06,-75.2794,-68.0547,-70.1355,0,-62.3087	1/1:55:0,55,0:0:0:55,0:1967,0:-177.258,-16.5567,0,-177.258,-16.5567,-177.258	1/2:69:0,24,45:0:0:24,45:864,1586:-199.403,-128.959,-121.734,-70.801,0,-57.2546	1/1:44:0,43,0:0:0:43,0:1511,0:-135.584,-12.9443,0,-135.584,-12.9443,-135.584	1/2:122:0,53,69:0:0:53,69:1878,2419:-349.418,-196.437,-180.482,-153.334,0,-132.563	1/1:39:0,39,0:0:0:39,0:1388,0:-125.091,-11.7402,0,-125.091,-11.7402,-125.091	1/2:30:0,13,17:0:0:13,17:468,596:-86.7946,-48.6043,-44.6909,-38.5453,0,-33.4278	1/2:121:0,57,64:0:0:57,64:2030,2216:-344.972,-179.523,-162.364,-165.8,0,-146.534	1/2:87:0,37,50:0:0:37,50:1309,1730:-246.849,-140.228,-129.09,-106.971,0,-91.9199	1/2:88:0,54,34:0:0:54,34:1932,1218:-256.701,-99.1749,-82.9193,-157.883,0,-147.648	.:.:.:.:.:.:.:.	1/2:7:0,5,2:0:0:5,2:180,71:-20.8194,-6.12831,-4.62316,-15.0469,0,-14.4449	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:8:0,7,1:0:0:7,1:244,36:-23.1214,-3.29214,-1.18493,-20.1872,0,-19.8862	1/2:4:0,2,2:0:0:2,2:72,72:-12.1001,-6.22497,-5.62291,-6.23466,0,-5.6326	1/2:186:0,84,101:0:0:84,101:2972,3532:-528.056,-286.014,-260.728,-242.033,0,-211.629	1/2:76:0,36,40:0:0:36,40:1250,1401:-215.347,-113.829,-102.992,-101.866,0,-89.8248	1/2:39:0,18,21:0:0:18,21:636,747:-112.701,-60.9996,-55.581,-52.0544,0,-45.7328	.:.:.:.:.:.:.:.	1/1:87:0,87,0:0:0:87,0:3083,0:-277.41,-26.1896,0,-277.41,-26.1896,-277.41	1/2:32:0,17,15:0:0:17,15:608,528:-92.8375,-43.2572,-38.1397,-49.9345,0,-45.4191	1/2:79:0,27,52:0:0:27,52:968,1835:-228.408,-149.454,-141.326,-79.3096,0,-63.656	1/2:52:0,20,32:0:0:20,32:712,1131:-150.169,-92.1551,-86.1345,-58.3684,0,-48.7354	1/2:52:0,30,22:0:0:30,22:1076,773:-150.852,-63.1188,-54.0879,-88.0867,0,-81.464	1/1:109:0,109,0:0:0:109,0:3883,0:-349.638,-32.8123,0,-349.638,-32.8123,-349.638	1/1:50:0,49,0:0:0:49,0:1756,0:-157.919,-14.7505,0,-157.919,-14.7505,-157.919	1/1:89:0,89,0:0:0:89,0:3168,0:-285.231,-26.7917,0,-285.231,-26.7917,-285.231	1/2:73:0,38,35:0:0:38,35:1343,1246:-210.834,-101.458,-90.0188,-109.73,0,-99.1942	1/2:69:0,33,35:0:0:33,35:1180,1199:-192.957,-96.7736,-86.8397,-96.1741,0,-85.6381	1/1:120:0,120,0:0:0:120,0:4292,0:-386.418,-36.1236,0,-386.418,-36.1236,-386.418	1/2:4:0,2,2:0:0:2,2:72,69:-11.8202,-5.93755,-5.33549,-6.23466,0,-5.6326	1/1:95:0,94,0:0:0:94,0:3344,0:-300.474,-28.2968,0,-300.474,-28.2968,-300.474	1/1:43:0,43,0:0:0:43,0:1512,0:-136.37,-12.9443,0,-136.37,-12.9443,-136.37	1/2:9:0,1,8:0:0:1,8:36,281:-26.1275,-23.1891,-22.8881,-3.29724,0,-0.889005	1/2:92:0,41,50:0:0:41,50:1464,1763:-262.623,-143.294,-130.952,-119.344,0,-104.292	1/2:31:0,13,18:0:0:13,18:464,638:-90.0034,-52.1957,-48.2823,-38.163,0,-32.7445	2/2:1:0,0,1:0:0:0,1:0,36:-3.58923,-3.58923,-3.58923,-0.30103,-0.30103,0	1/2:22:0,9,13:0:0:9,13:324,452:-63.3467,-37.0087,-34.2994,-26.6917,0,-22.7783	1/2:72:0,28,44:0:0:28,44:996,1536:-206.233,-125.06,-116.631,-81.526,0,-68.2807	1/2:104:0,53,51:0:0:53,51:1895,1807:-301.652,-147.181,-131.227,-154.826,0,-139.474	.:.:.:.:.:.:.:.	1/2:118:0,51,67:0:0:51,67:1807,2377:-340.705,-193.517,-178.165,-147.542,0,-127.373	1/2:115:0,40,74:0:0:40,74:1440,2612:-329.121,-211.656,-199.615,-117.52,0,-95.2439	1/2:60:0,26,34:0:0:26,34:905,1193:-170.589,-97.2596,-89.4328,-73.6779,0,-63.4429	1/1:25:0,25,0:0:0:25,0:896,0:-80.947,-7.52575,0,-80.947,-7.52575,-80.947	1/2:101:0,42,59:0:0:42,59:1512,2069:-291.464,-168.124,-155.481,-123.696,0,-105.935	1/2:86:0,21,65:0:0:21,65:752,2320:-250.317,-188.99,-182.668,-61.6846,0,-42.1177	1/1:19:0,19,0:0:0:19,0:675,0:-61.0593,-5.71957,0,-61.0593,-5.71957,-61.0593	1/1:71:0,70,0:0:0:70,0:2485,0:-223.46,-21.0721,0,-223.46,-21.0721,-223.46	1/2:57:0,35,22:0:0:35,22:1243,762:-163.216,-61.9268,-51.3908,-101.638,0,-95.0152	1/2:28:0,12,16:0:0:12,16:428,564:-81.0477,-46.1556,-42.5432,-35.2464,0,-30.43	1/1:55:0,54,1:0:0:54,1:1903,36:-171.081,-16.2556,0,-168.148,-12.9635,-167.847	1/2:78:0,35,42:0:0:35,42:1260,1477:-221.954,-119.253,-108.717,-102.773,0,-90.1294	1/1:70:1,69,0:1:30:69,0:2448,0:-217.5,-18.0735,0,-217.801,-20.7711,-220.198	1/1:147:0,147,0:0:0:147,0:5226,0:-470.419,-44.2514,0,-470.419,-44.2514,-470.419	1/2:36:0,10,26:0:0:10,26:348,891:-100.274,-72.0201,-69.0098,-28.5996,0,-20.7728	1/2:52:0,23,28:0:0:23,28:828,975:-146.558,-79.0365,-72.1128,-67.5161,0,-59.0873	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:59:0,59,0:0:0:59,0:2095,0:-188.772,-17.7608,0,-188.772,-17.7608,-188.772	1/2:41:0,22,19:0:0:22,19:783,673:-118.617,-54.8457,-48.2231,-64.1253,0,-58.4057	1/1:103:0,102,0:0:0:102,0:3612,0:-324.835,-30.7051,0,-324.835,-30.7051,-324.835	1/2:39:0,19,20:0:0:19,20:676,687:-111.089,-55.9901,-50.2705,-55.4484,0,-49.4278	1/1:59:0,59,0:0:0:59,0:2095,0:-188.776,-17.7608,0,-188.776,-17.7608,-188.776	1/2:40:0,23,17:0:0:23,17:820,599:-115.778,-48.9499,-42.0263,-67.1812,0,-62.0637	1/1:116:1,113,0:1:27:113,0:4018,0:-358.888,-31.8899,0,-359.189,-34.0164,-361.317	1/2:25:0,11,14:0:0:11,14:388,488:-71.5577,-39.9625,-36.6512,-31.9457,0,-27.7312	1/2:61:0,24,37:0:0:24,37:864,1300:-176.258,-105.756,-98.5312,-70.8578,0,-59.7197	1/1:64:0,64,0:0:0:64,0:2266,0:-204.104,-19.2659,0,-204.104,-19.2659,-204.104	1/1:32:0,32,0:0:0:32,0:1140,0:-102.689,-9.63296,0,-102.689,-9.63296,-102.689	1/2:107:0,55,52:0:0:55,52:1950,1821:-306.485,-147.757,-131.2,-159.079,0,-143.426	1/2:66:0,21,45:0:0:21,45:752,1594:-191.2,-129.872,-123.551,-61.6837,0,-48.1374	1/1:92:0,90,1:0:0:90,1:3224,36:-289.984,-27.0927,0,-287.055,-24.1639,-286.754	1/1:96:0,95,0:0:0:95,0:3383,0:-304.266,-28.5979,0,-304.266,-28.5979,-304.266
chr09	7904536	.	G	T	174079	PASS	AB=0.524954;ABP=38.1231;AC=126;AF=0.677419;AN=186;AO=8454;CIGAR=1X;DP=11553;DPB=11553;DPRA=0;EPP=18360.6;EPPR=6723.72;GTI=5;LEN=1;MEANALT=1.04301;MQM=59.9894;MQMR=60;NS=93;NUMALT=1;ODDS=1.92877;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=301317;QR=110329;RO=3095;RPL=8454;RPP=18360.6;RPPR=6723.72;RPR=0;RUN=1;SAF=8454;SAP=18360.6;SAR=0;SRF=3095;SRP=6723.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:120:52,68:52:1849:68:2436:-183.372,0,-130.564	1/1:89:0,89:0:0:89:3155:-284.174,-26.7917,0	1/1:238:3,235:3:108:235:8368:-743.054,-61.57,0	1/1:198:1,197:1:32:197:7033:-629.831,-56.4046,0	0/1:119:65,54:65:2286:54:1940:-139.054,0,-170.177	0/1:83:33,50:33:1165:50:1800:-137.297,0,-80.1695	1/1:148:0,148:0:0:148:5288:-476.053,-44.5524,0	0/1:125:57,68:57:2031:68:2419:-180.337,0,-145.433	0/1:159:79,80:79:2823:80:2856:-209.414,0,-206.445	0/1:104:44,60:44:1567:60:2139:-161.471,0,-110.014	0/1:76:26,50:26:919:50:1784:-137.964,0,-60.1479	1/1:152:0,152:0:0:152:5359:-482.444,-45.7566,0	0/1:89:36,53:36:1283:53:1897:-144.215,0,-88.981	0/1:86:41,45:41:1468:45:1607:-119.031,0,-106.528	0/1:88:34,54:34:1203:54:1931:-147.575,0,-82.0844	0/1:73:37,36:37:1306:36:1292:-94.6086,0,-95.8648	0/1:49:21,28:21:744:28:990:-74.6622,0,-52.5339	1/1:39:0,39:0:0:39:1381:-124.587,-11.7402,0	0/1:41:15,26:15:536:26:924:-71.1354,0,-36.2326	0/1:182:84,98:84:3016:98:3500:-260.424,0,-216.883	0/1:164:85,79:85:3040:79:2823:-204.94,0,-224.461	0/1:161:100,61:100:3592:61:2188:-148.72,0,-275.02	1/1:176:0,176:0:0:176:6267:-564.126,-52.9813,0	0/1:131:66,65:66:2364:65:2324:-169.981,0,-173.583	1/1:215:1,214:1:36:214:7630:-683.142,-61.1232,0	0/1:336:160,176:160:5667:176:6278:-463.967,0,-409.003	1/1:426:0,426:0:0:426:15194:-1367.18,-128.239,0	0/1:45:21,24:21:756:24:855:-63.7238,0,-54.8209	0/1:290:146,144:146:5240:144:5090:-370.946,0,-384.437	0/1:170:77,93:77:2744:93:3306:-246.582,0,-196.028	0/1:188:75,113:75:2639:113:4001:-303.686,0,-181.16	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:11:5,6:5:172:6:212:-16.1135,0,-12.5066	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:247:98,148:98:3480:148:5256:-398.766,0,-238.998	0/1:250:120,130:120:4266:130:4626:-341.245,0,-308.863	0/1:38:15,23:15:527:23:801:-60.9676,0,-36.321	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	1/1:206:0,206:0:0:206:7329:-659.661,-62.0122,0	0/1:47:25,22:25:892:22:784:-56.7355,0,-66.4513	0/1:166:75,91:75:2680:91:3264:-244.009,0,-191.474	0/1:48:16,32:16:576:32:1133:-87.8272,0,-37.7255	0/1:55:26,29:26:923:29:1023:-75.8251,0,-66.8301	1/1:200:0,200:0:0:200:7141:-642.749,-60.206,0	1/1:98:0,98:0:0:98:3454:-311.065,-29.5009,0	1/1:187:0,187:0:0:187:6633:-597.053,-56.2926,0	0/1:151:86,64:86:3041:64:2296:-161.387,0,-228.404	0/1:102:46,55:46:1648:55:1976:-147.351,0,-117.845	1/1:265:1,264:1:36:264:9459:-847.67,-76.1747,0	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	1/1:349:0,349:0:0:349:12405:-1116.29,-105.059,0	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:154:85,68:85:3039:68:2406:-170.379,0,-227.322	0/1:95:58,37:58:2071:37:1332:-91.5845,0,-158.062	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/1:210:82,128:82:2935:128:4563:-347.619,0,-201.167	0/1:163:74,89:74:2617:89:3172:-236.635,0,-186.709	.:.:.:.:.:.:.:.	0/1:141:66,75:66:2360:75:2687:-199.629,0,-170.213	0/1:244:123,121:123:4408:121:4318:-315.315,0,-323.441	0/1:91:48,43:48:1716:43:1548:-112.219,0,-127.332	1/1:88:1,87:1:36:87:3124:-277.787,-22.8924,0	0/1:109:64,45:64:2296:45:1608:-112.198,0,-174.089	0/1:184:122,62:122:4352:62:2208:-143.596,0,-336.464	1/1:42:0,42:0:0:42:1485:-133.943,-12.6433,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	0/1:77:32,45:32:1137:45:1612:-122.191,0,-79.4577	0/1:35:6,29:6:216:29:1035:-82.927,0,-9.25446	1/1:327:2,325:2:72:325:11586:-1035.77,-91.6001,0	0/1:67:27,40:27:968:40:1432:-109.009,0,-67.2684	1/1:292:1,291:1:36:291:10342:-927.104,-84.3025,0	1/1:174:1,173:1:36:173:6164:-551.26,-48.7809,0	0/1:227:117,110:117:4167:110:3931:-285.649,0,-306.88	0/1:75:29,46:29:1040:46:1620:-123.51,0,-71.3371	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:104:0,104:0:0:104:3722:-335.18,-31.3071,0	0/1:113:44,69:44:1568:69:2476:-189.077,0,-107.395	1/1:222:0,222:0:0:222:7932:-713.905,-66.8287,0	0/1:89:43,46:43:1540:46:1635:-120.646,0,-112.101	1/1:87:0,87:0:0:87:3098:-279.047,-26.1896,0	0/1:50:21,29:21:752:29:1036:-78.5024,0,-52.9548	1/1:166:2,164:2:72:164:5821:-517.169,-43.1343,0	0/1:41:22,19:22:792:19:671:-48.3736,0,-59.2634	0/1:77:31,46:31:1112:46:1634:-124.168,0,-77.212	1/1:84:0,84:0:0:84:2998:-270.048,-25.2865,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:131:54,77:54:1909:77:2756:-208.847,0,-132.651	0/1:66:41,25:41:1463:25:896:-61.0924,0,-112.097	1/1:154:2,152:2:72:152:5437:-482.622,-39.5219,0	1/1:144:0,144:0:0:144:5121:-461.032,-43.3483,0
chr09	7904767	.	A	G	258778	PASS	AB=0.520194;ABP=82.0279;AC=60;AF=0.319149;AN=188;AO=11641;CIGAR=1X;DP=37473;DPB=37473;DPRA=1.18615;EPP=25272.4;EPPR=56076.9;GTI=0;LEN=1;MEANALT=1.11842;MQM=59.9718;MQMR=59.9865;NS=94;NUMALT=1;ODDS=24.914;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=403770;QR=922049;RO=25823;RPL=6428;RPP=278.38;RPPR=490.202;RPR=5213;RUN=1;SAF=6427;SAP=277.474;SAR=5214;SRF=14115;SRP=490.202;SRR=11708;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:226:101,125:101:3598:125:4368:-325.265,0,-255.994	0/0:651:651,0:651:23262:0:0:0,-195.971,-2092.8	0/0:509:508,1:508:18148:1:21:0,-151.124,-1630.81	0/0:862:861,1:861:30797:1:36:0,-255.89,-2767.16	0/1:250:121,129:121:4312:129:4480:-328.119,0,-312.998	0/1:176:89,87:89:3149:87:2963:-213.918,0,-230.652	0/0:442:441,1:441:15738:1:36:0,-129.457,-1412.51	0/1:644:348,295:348:12424:295:10224:-726.186,0,-924.076	0/1:498:213,285:213:7561:285:9948:-745.357,0,-530.621	0/1:356:163,193:163:5768:193:6693:-495.292,0,-412.072	0/1:181:84,97:84:2989:97:3296:-242.379,0,-214.755	0/0:371:371,0:371:13248:0:0:0,-111.682,-1192.12	0/1:297:133,164:133:4752:164:5705:-424.173,0,-338.433	0/1:207:109,98:109:3888:98:3370:-241.208,0,-287.802	0/1:307:162,145:162:5803:145:5057:-362.867,0,-429.958	0/1:214:113,101:113:4015:101:3468:-247.916,0,-297.118	0/1:204:106,98:106:3782:98:3324:-237.976,0,-279.168	0/0:185:185,0:185:6606:0:0:0,-55.6905,-594.621	0/1:137:70,67:70:2504:67:2328:-168.536,0,-184.371	0/1:1085:474,611:474:16922:611:21349:-1594.25,0,-1196.01	0/1:874:454,420:454:16256:420:14636:-1053.91,0,-1199.61	0/1:349:91,258:91:3247:258:8955:-700.894,0,-187.392	0/0:454:451,3:451:16099:3:108:0,-126.592,-1438.52	0/1:530:316,214:316:11315:214:7422:-508.471,0,-858.682	0/0:320:319,1:319:11426:1:36:0,-92.7313,-1024.62	0/1:1375:714,660:714:25505:660:22900:-1646.53,0,-1880.79	0/0:888:888,0:888:31756:0:0:0,-267.315,-2857.06	0/1:160:88,72:88:3164:72:2445:-172.142,0,-236.818	0/1:1078:485,592:485:17379:592:20752:-1542.64,0,-1239.16	0/1:446:200,246:200:7130:246:8530:-632.524,0,-507.344	0/1:564:300,264:300:10706:264:9258:-663.425,0,-793.668	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/1:97:36,61:36:1283:61:2155:-165.015,0,-86.5727	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:34:9,25:9:320:25:858:-67.2957,0,-18.9073	0/1:82:41,41:41:1464:41:1436:-104.841,0,-107.372	0/1:802:422,379:422:15080:379:13099:-937.276,0,-1115.44	0/1:490:209,281:209:7462:281:9636:-719.722,0,-524.121	0/1:202:115,87:115:4111:87:2978:-207.433,0,-309.367	0/1:15:8,7:8:288:7:228:-16.3221,0,-21.752	0/0:659:659,0:659:23535:0:0:0,-198.379,-2116.66	0/1:120:60,60:60:2127:60:2045:-148.194,0,-155.575	0/1:771:351,420:351:12556:420:14610:-1082.59,0,-897.774	0/1:309:172,137:172:6142:137:4604:-321.499,0,-459.862	0/1:260:125,135:125:4476:135:4607:-336.539,0,-324.742	0/0:445:445,0:445:15906:0:0:0,-133.958,-1431.23	0/0:478:476,2:476:16974:2:72:0,-137.056,-1520.47	0/0:626:616,10:616:22013:10:345:0,-157.064,-1949.22	0/1:337:163,174:163:5797:174:6017:-440.203,0,-420.31	0/1:510:245,265:245:8733:265:9148:-669.795,0,-632.436	0/0:624:622,2:622:22229:2:72:0,-181.006,-1993.17	0/1:62:23,39:23:815:39:1370:-104.933,0,-55.0069	0/0:730:729,1:729:26107:1:21:0,-217.652,-2346.78	0/0:215:215,0:215:7691:0:0:0,-64.7214,-692.224	0/1:49:32,17:32:1135:17:612:-40.663,0,-87.7076	0/1:561:272,289:272:9680:289:10092:-739.355,0,-702.276	0/1:264:125,139:125:4480:139:4854:-357.548,0,-323.897	0/1:56:28,28:28:996:28:957:-69.5777,0,-73.0972	0/1:75:34,41:34:1220:41:1408:-104.433,0,-87.5296	0/1:325:161,163:161:5717:163:5675:-412.984,0,-416.755	0/1:328:188,140:188:6707:140:4825:-335.674,0,-504.968	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:584:262,322:262:9370:322:11252:-836.785,0,-667.462	0/1:781:417,363:417:14870:363:12587:-897.532,0,-1102.87	0/1:333:139,193:139:4949:193:6715:-504.123,0,-345.256	0/0:374:373,1:373:13357:1:36:0,-108.987,-1198.32	0/1:781:362,419:362:12872:419:14563:-1075.35,0,-923.172	0/1:466:137,329:137:4900:329:11504:-894.917,0,-300.87	0/0:141:141,0:141:5016:0:0:0,-42.4452,-451.587	0/0:451:451,0:451:16108:0:0:0,-135.765,-1449.4	0/1:217:95,122:95:3380:122:4127:-306.291,0,-239.091	0/1:58:28,30:28:996:30:1051:-77.4031,0,-72.4951	0/0:489:489,0:489:17450:0:0:0,-147.204,-1570.13	0/1:334:178,156:178:6331:156:5476:-392.43,0,-469.068	0/0:753:752,1:752:26786:1:36:0,-223.077,-2406.37	0/0:725:725,0:725:25943:0:0:0,-218.247,-2334.09	0/1:328:142,185:142:5078:185:6423:-479.317,0,-358.367	0/1:468:194,273:194:6950:273:9417:-706.581,0,-484.195	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:588:587,1:587:20946:1:36:0,-173.407,-1881.01	0/1:406:165,241:165:5879:241:8482:-641.175,0,-407.003	0/0:832:830,2:830:29604:2:72:0,-243.62,-2656.62	0/1:298:158,140:158:5638:140:4764:-339.226,0,-417.835	0/0:289:288,1:288:10286:1:36:0,-83.3994,-922.069	0/1:343:167,176:167:5954:176:6015:-438.223,0,-432.714	0/0:570:563,7:563:20053:7:252:0,-148.558,-1781.26	0/1:110:71,39:71:2532:39:1322:-86.1597,0,-195.004	0/1:287:144,143:144:5151:143:4892:-354.051,0,-377.335	0/0:295:295,0:295:10488:0:0:0,-88.8038,-943.842	0/0:123:123,0:123:4404:0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chr09	7904774	.	A	G	665399	PASS	AB=0.462659;ABP=280;AC=128;AF=0.680851;AN=188;AO=25496;CIGAR=1X;DP=37835;DPB=37835;DPRA=0;EPP=55366.9;EPPR=26729.5;GTI=0;LEN=1;MEANALT=1.24468;MQM=59.9861;MQMR=59.9647;NS=94;NUMALT=1;ODDS=10.9293;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=903815;QR=438815;RO=12312;RPL=13586;RPP=242.248;RPPR=86.0095;RPR=11910;RUN=1;SAF=13586;SAP=242.248;SAR=11910;SRF=6498;SRP=85.5263;SRR=5814;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:219:123,96:123:4391:96:3430:-242.988,0,-329.438	1/1:646:1,644:1:36:644:22942:-2060.27,-190.926,0	1/1:492:0,492:0:0:492:17583:-1582.09,-148.107,0	1/1:864:2,861:2:72:861:30505:-2737.72,-253.312,0	0/1:256:135,121:135:4838:121:4270:-307.417,0,-358.509	0/1:179:91,88:91:3237:88:3123:-227.411,0,-237.659	1/1:442:0,441:0:0:441:15678:-1410.37,-132.754,0	0/1:644:310,334:310:11037:334:11860:-873.408,0,-799.321	0/1:502:302,200:302:10775:200:7077:-485.883,0,-818.339	0/1:366:204,162:204:7226:162:5773:-409.509,0,-540.209	0/1:186:105,81:105:3755:81:2863:-201.915,0,-282.158	1/1:357:0,357:0:0:357:12667:-1139.87,-107.468,0	0/1:294:167,127:167:5963:127:4492:-315.95,0,-448.275	0/1:219:108,111:108:3807:111:3956:-290.308,0,-276.905	0/1:318:157,161:157:5599:161:5725:-419.634,0,-408.298	0/1:222:108,114:108:3850:114:4060:-298.761,0,-279.863	0/1:207:104,103:104:3685:103:3664:-267.653,0,-269.541	1/1:179:0,179:0:0:179:6384:-574.651,-53.8844,0	0/1:138:70,68:70:2500:68:2428:-177.234,0,-183.711	0/1:1093:627,465:627:22337:465:16492:-1154.87,0,-1680.67	0/1:894:445,449:445:15815:449:15763:-1149.27,0,-1153.93	0/1:366:273,93:273:9709:93:3314:-188.301,0,-763.587	1/1:451:2,449:2:72:449:15934:-1426.92,-128.928,0	0/1:540:225,314:225:8008:314:11104:-836.645,0,-558.102	1/1:315:1,314:1:36:314:11113:-996.475,-91.2262,0	0/1:1443:724,719:724:25889:719:25493:-1859.29,0,-1894.89	1/1:875:1,874:1:36:874:30856:-2772.55,-259.803,0	0/1:167:77,89:77:2737:89:3144:-232.853,0,-196.241	0/1:1102:616,486:616:21945:486:17283:-1223.38,0,-1642.76	0/1:462:261,201:261:9309:201:7165:-505.675,0,-698.702	0/1:574:279,293:279:9911:293:10318:-756.008,0,-719.388	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:98:62,36:62:2223:36:1284:-86.3625,0,-170.833	1/1:27:1,26:1:36:26:916:-79.1582,-4.52954,0	0/1:37:28,9:28:1000:9:316:-17.6407,0,-79.1773	0/1:79:40,39:40:1424:39:1387:-101.347,0,-104.653	0/1:828:409,419:409:14574:419:14784:-1081.07,0,-1061.66	0/1:509:294,215:294:10516:215:7594:-530.279,0,-793.127	0/1:206:92,114:92:3296:114:4016:-299.622,0,-234.834	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	1/1:648:0,648:0:0:648:23047:-2073.63,-195.067,0	0/1:128:68,60:68:2406:60:2124:-152.895,0,-178.265	0/1:801:450,351:450:16088:351:12432:-877.597,0,-1206.47	0/1:312:137,175:137:4870:175:6169:-461.395,0,-344.512	0/1:262:136,126:136:4860:126:4475:-324.051,0,-358.685	1/1:438:0,437:0:0:437:15421:-1387.26,-131.55,0	1/1:469:1,467:1:36:467:16567:-1487.09,-137.644,0	1/1:611:7,604:7:248:604:21330:-1896.52,-161.265,0	0/1:347:186,161:186:6624:161:5740:-412.071,0,-491.784	0/1:527:289,238:289:10282:238:8474:-604.021,0,-766.668	1/1:620:3,616:3:99:616:21903:-1961.47,-177.453,0	0/1:63:40,23:40:1424:23:806:-53.8933,0,-109.493	1/1:729:1,726:1:36:726:25896:-2326.32,-215.61,0	1/1:211:1,209:1:36:209:7373:-660.027,-59.9779,0	0/1:48:18,30:18:644:30:1068:-81.9826,0,-43.8412	0/1:575:307,268:307:10945:268:9511:-682.864,0,-811.854	0/1:272:151,120:151:5347:120:4264:-302.15,0,-399.576	0/1:57:28,29:28:1004:29:1021:-75.0415,0,-73.5172	0/1:74:40,34:40:1436:34:1216:-87.4703,0,-107.261	0/1:333:172,161:172:6111:161:5733:-415.843,0,-449.851	0/1:329:144,185:144:5135:185:6559:-491.358,0,-363.252	1/1:27:0,27:0:0:27:951:-85.9043,-8.12781,0	0/1:599:337,262:337:12038:262:9254:-652.521,0,-902.956	0/1:816:398,418:398:14184:418:14798:-1085.7,0,-1030.67	0/1:335:201,134:201:7199:134:4753:-327.083,0,-547.101	1/1:374:1,373:1:36:373:13236:-1187.44,-108.987,0	0/1:811:451,359:451:16051:359:12688:-897.54,0,-1200.07	0/1:482:347,135:347:12365:135:4787:-285.892,0,-967.171	1/1:139:0,139:0:0:139:4922:-443.133,-41.8432,0	1/1:443:0,442:0:0:442:15742:-1416.13,-133.055,0	0/1:230:133,96:133:4732:96:3383:-235.363,0,-356.735	0/1:59:31,28:31:1108:28:991:-71.7428,0,-82.1839	1/1:471:0,469:0:0:469:16626:-1495.66,-141.183,0	0/1:332:163,169:163:5824:169:6019:-441.876,0,-424.315	1/1:743:0,742:0:0:742:26206:-2357.47,-223.364,0	1/1:717:0,717:0:0:717:25489:-2293.3,-215.839,0	0/1:327:190,137:190:6776:137:4880:-340.919,0,-511.097	0/1:498:307,191:307:10916:191:6803:-462.003,0,-832.432	1/1:52:0,52:0:0:52:1848:-166.6,-15.6536,0	1/1:582:0,582:0:0:582:20560:-1849.91,-175.199,0	0/1:408:248,159:248:8867:159:5646:-385.386,0,-675.03	1/1:825:2,823:2:72:823:29163:-2616.99,-241.513,0	0/1:303:144,159:144:5132:159:5647:-417.141,0,-370.813	1/1:281:0,281:0:0:281:9933:-893.922,-84.5894,0	0/1:356:188,168:188:6691:168:5934:-427.006,0,-495.099	1/1:572:8,562:8:276:562:19802:-1756.51,-146.769,0	0/1:110:39,71:39:1387:71:2528:-194.623,0,-92.0149	0/1:285:147,138:147:5264:138:4873:-352.933,0,-388.099	1/1:288:0,288:0:0:288:10270:-924.231,-86.6966,0	1/1:120:0,120:0:0:120:423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chr09	7940113	.	T	C	23465.8	PASS	AB=0.496142;ABP=3.39564;AC=62;AF=0.329787;AN=188;AO=1489;CIGAR=1X;DP=4976;DPB=4976;DPRA=1.00108;EPP=3236.33;EPPR=7566.25;GTI=2;LEN=1;MEANALT=1.03077;MQM=59.9785;MQMR=60;NS=94;NUMALT=1;ODDS=1.81265;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52074;QR=124466;RO=3483;RPL=1489;RPP=3236.33;RPPR=7566.25;RPR=0;RUN=1;SAF=1489;SAP=3236.33;SAR=0;SRF=3483;SRP=7566.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:32,14:32:1148:14:485:-30.1296,0,-89.7825	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.439	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/0:62:61,0:61:2162:0:0:0,-18.3628,-194.594	0/1:68:43,25:43:1536:25:847:-56.0654,0,-118.063	0/1:48:17,31:17:612:31:1086:-83.5981,0,-40.964	0/1:45:13,32:13:464:32:1136:-89.0025,0,-28.5512	0/1:34:20,14:20:712:14:471:-32.4743,0,-54.1716	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/1:46:22,24:22:784:24:856:-63.5137,0,-57.0365	0/1:36:17,19:17:612:19:671:-49.8787,0,-44.5764	0/1:41:15,26:15:540:26:928:-71.496,0,-36.5943	0/1:38:12,26:12:428:26:876:-67.7067,0,-27.4197	0/1:27:14,13:14:492:13:446:-32.3391,0,-36.4845	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:21:10,11:10:356:11:388:-28.9357,0,-26.0596	0/1:134:60,74:60:2144:74:2605:-194.272,0,-152.89	0/1:131:67,64:67:2395:64:2238:-162.244,0,-176.372	0/1:61:19,42:19:680:42:1495:-116.481,0,-43.1663	0/0:64:64,0:64:2281:0:0:0,-19.2659,-205.55	0/1:80:34,45:34:1224:45:1575:-117.896,0,-86.3258	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:115:52,63:52:1860:63:2199:-163.555,0,-133.061	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/1:18:11,7:11:396:7:229:-15.511,0,-30.5642	0/1:100:55,45:55:1963:45:1564:-110.942,0,-146.842	0/1:78:39,39:39:1400:39:1400:-102.819,0,-102.819	0/1:48:22,26:22:773:26:919:-68.5767,0,-55.44	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:3,8:3:108:8:275:-21.7721,0,-6.76384	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:111:62,49:62:2211:49:1721:-121.758,0,-165.84	0/1:88:51,37:51:1824:37:1292:-90.0875,0,-137.95	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5241	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:72:71,1:71:2552:1:36:0,-18.0759,-226.332	0/1:21:9,12:9:324:12:409:-30.8138,0,-23.1842	0/1:109:69,40:69:2459:40:1432:-96.3653,0,-188.752	0/1:31:16,15:16:572:15:515:-37.3431,0,-42.4815	0/1:53:33,20:33:1171:20:705:-47.8203,0,-89.7421	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:104:104,0:104:3699:0:0:0,-31.3071,-333.111	0/1:66:27,39:27:953:39:1379:-104.54,0,-66.2153	0/1:36:16,20:16:572:20:700:-52.4864,0,-40.9763	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.978	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:77:46,31:46:1648:31:1100:-76.131,0,-125.429	0/1:17:12,5:12:432:5:176:-11.0675,0,-34.1037	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:29:14,15:14:500:15:527:-39.0303,0,-36.6063	0/1:69:35,34:35:1256:34:1200:-87.5326,0,-92.5742	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:72:39,33:39:1389:33:1134:-80.6859,0,-103.633	0/1:92:40,51:40:1440:51:1777:-132.454,0,-102.144	0/1:47:22,25:22:788:25:879:-65.2784,0,-57.0964	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/1:88:47,41:47:1675:41:1424:-101.961,0,-124.546	0/1:83:25,58:25:896:58:2042:-159.066,0,-55.9749	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:27:16,11:16:564:11:385:-26.8569,0,-42.9625	0/1:25:14,11:14:495:11:384:-27.3689,0,-37.3573	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.57	0/1:53:19,34:19:684:34:1190:-91.4464,0,-45.9357	0/0:104:103,0:103:3656:0:0:0,-31.0061,-329.033	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:62:45,17:45:1620:17:581:-33.946,0,-127.426	0/1:40:13,27:13:468:27:937:-72.5997,0,-30.4184	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/1:68:35,33:35:1247:33:1149:-83.2436,0,-92.064	0/0:177:176,1:176:6283:1:36:0,-49.684,-561.964	0/1:46:25,21:25:892:21:732:-52.3513,0,-66.7523	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:28:14,14:14:496:14:483:-35.3684,0,-36.5454	0/0:80:79,1:79:2810:1:36:0,-20.4841,-249.541	0/1:19:8,11:8:288:11:366:-27.5415,0,-20.5478	0/1:55:27,28:27:963:28:946:-68.8878,0,-70.4293	0/0:64:63,1:63:2256:1:36:0,-15.6676,-199.705	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:109:71,38:71:2548:38:1298:-84.3004,0,-196.758	0/1:37:15,22:15:540:22:767:-58.2108,0,-37.7984	0/0:63:62,1:62:2192:1:36:0,-15.3666,-193.945	0/0:76:76,0:76:2690:0:0:0,-22.8783,-242.342
chr09	7940637	.	A	T	134174	PASS	AB=0.411001;ABP=427.02;AC=127;AF=0.675532;AN=188;AO=6645;CIGAR=1X;DP=10303;DPB=10303;DPRA=0;EPP=14432.4;EPPR=7939.74;GTI=1;LEN=1;MEANALT=1.02128;MQM=56.4519;MQMR=59.9921;NS=94;NUMALT=1;ODDS=0.848027;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237615;QR=130546;RO=3655;RPL=5;RPP=14389;RPPR=7931.06;RPR=6640;RUN=1;SAF=5;SAP=14389;SAR=6640;SRF=1;SRP=7931.06;SRR=3654;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:40,46:40:1424:46:1648:-122.564,0,-102.569	1/1:84:1,83:1:36:83:2971:-263.883,-21.6882,0	1/1:161:0,161:0:0:161:5755:-517.632,-48.4658,0	1/1:222:2,220:2:72:220:7873:-700.672,-59.9919,0	0/1:122:65,57:65:2323:57:2036:-146.497,0,-172.604	0/1:67:37,30:37:1328:30:1072:-76.5974,0,-99.6528	1/1:161:1,160:1:36:160:5703:-509.222,-44.8676,0	0/1:185:112,73:112:3966:73:2619:-179.734,0,-301.441	0/1:167:88,79:88:3147:79:2821:-203.612,0,-233.183	0/1:82:56,26:56:1999:26:910:-57.4055,0,-155.499	0/1:83:41,42:41:1459:42:1503:-110.295,0,-106.62	1/1:63:0,63:0:0:63:2255:-203.1,-18.9649,0	0/1:51:28,23:28:1008:23:824:-59.1118,0,-75.6838	0/1:62:40,22:40:1400:22:792:-52.8944,0,-107.63	0/1:42:24,18:24:864:18:648:-45.8987,0,-65.4393	0/1:49:30,19:30:1072:19:676:-46.3542,0,-82.042	0/1:52:32,20:32:1148:20:711:-48.5589,0,-87.9763	1/1:41:0,41:0:0:41:1468:-132.244,-12.3422,0	0/1:36:26,10:26:932:10:356:-21.5361,0,-73.3618	0/1:245:160,85:160:5727:85:3044:-200.241,0,-441.794	0/1:93:35,58:35:1243:58:2076:-158.457,0,-84.1781	0/1:131:97,34:97:3472:34:1212:-69.6903,0,-273.257	1/1:117:1,116:1:36:116:4131:-368.068,-31.6222,0	0/1:182:105,77:105:3748:77:2756:-193.226,0,-282.731	1/1:118:1,117:1:36:117:4188:-372.92,-31.9233,0	0/1:294:170,124:170:6103:124:4406:-307.995,0,-460.85	1/1:287:2,285:2:72:285:10220:-911.655,-79.5589,0	0/1:46:25,21:25:896:21:752:-54.128,0,-67.1023	0/1:318:192,126:192:6892:126:4504:-309.434,0,-524.618	0/1:134:67,67:67:2395:67:2373:-173.228,0,-175.468	0/1:153:102,51:102:3641:51:1828:-118.066,0,-281.836	1/1:23:0,23:0:0:23:820:-74.0688,-6.92369,0	0/1:35:15,20:15:540:20:712:-53.8423,0,-38.4005	1/1:9:0,9:0:0:9:320:-29.1347,-2.70927,0	0/1:12:5,7:5:180:7:252:-19.3414,0,-12.9397	0/1:25:18,7:18:648:7:252:-15.4968,0,-51.1261	0/1:203:134,69:134:4780:69:2473:-161.514,0,-369.247	0/1:176:79,97:79:2810:97:3459:-258.304,0,-200.158	0/1:62:33,29:33:1163:29:1035:-74.7047,0,-86.3123	0/1:15:11,4:11:396:4:144:-8.79184,0,-31.4673	1/1:141:0,141:0:0:141:5043:-453.234,-42.4452,0	0/1:45:21,24:21:748:24:864:-64.3206,0,-54.0989	0/1:194:109,85:109:3869:85:3044:-214.97,0,-290.006	0/1:45:29,16:29:1040:16:576:-38.1006,0,-80.368	0/1:53:30,23:30:1063:23:828:-58.8257,0,-80.0262	1/1:342:0,342:0:0:342:12238:-1099.94,-102.952,0	1/1:108:0,108:0:0:108:3856:-345.657,-32.5112,0	1/1:227:0,227:0:0:227:8086:-725.904,-68.3338,0	0/1:172:81,91:81:2892:91:3260:-241.642,0,-208.74	0/1:174:108,66:108:3861:66:2368:-160.145,0,-295.305	1/1:391:0,391:0:0:391:13972:-1254.58,-117.703,0	0/1:17:10,7:10:360:7:252:-17.8956,0,-27.6268	1/1:143:0,143:0:0:143:5128:-461.432,-43.0473,0	1/1:20:0,20:0:0:20:720:-65.0924,-6.0206,0	0/1:38:19,19:19:684:19:676:-49.7107,0,-50.4512	0/1:160:104,56:104:3708:56:2008:-132.648,0,-285.756	0/1:82:50,32:50:1800:32:1152:-79.1487,0,-137.598	0/1:18:7,11:7:248:11:396:-30.5513,0,-17.2457	0/1:27:11,16:11:396:16:576:-43.9772,0,-27.8549	0/1:97:56,41:56:1995:41:1476:-103.873,0,-150.623	0/1:102:54,48:54:1931:48:1728:-124.894,0,-143.361	1/1:13:0,13:0:0:13:468:-42.4298,-3.91339,0	0/1:80:47,33:47:1680:33:1163:-80.7897,0,-127.405	0/1:376:221,155:221:7899:155:5544:-385.221,0,-597.747	0/1:93:44,49:44:1565:49:1754:-129.949,0,-113.144	1/1:69:1,67:1:36:67:2396:-211.674,-17.2315,0	0/1:212:137,75:137:4897:75:2684:-177.644,0,-377.062	0/1:30:22,8:22:788:8:288:-17.1064,0,-62.2139	1/1:16:0,16:0:0:16:568:-51.4001,-4.81648,0	1/1:38:0,38:0:0:38:1368:-123.371,-11.4391,0	0/1:86:60,26:60:2148:26:936:-58.592,0,-167.699	0/0:14:13,1:13:464:1:36:0,-0.61874,-38.5018	1/1:248:0,248:0:0:248:8867:-797.284,-74.6554,0	0/1:58:37,21:37:1324:21:756:-50.8571,0,-102.002	1/1:268:0,268:0:0:268:9570:-858.242,-80.676,0	1/1:112:0,112:0:0:112:3982:-357.888,-33.7154,0	0/1:135:88,47:88:3152:47:1684:-111.168,0,-243.266	0/1:74:39,35:39:1382:35:1256:-90.8653,0,-102.401	1/1:13:0,13:0:0:13:468:-42.4483,-3.91339,0	1/1:93:1,92:1:36:92:3290:-292.186,-24.3975,0	0/1:119:90,29:90:3227:29:1044:-57.7158,0,-254.828	1/1:230:1,227:1:36:227:8092:-722.649,-65.3897,0	0/1:110:68,42:68:2427:42:1500:-101.943,0,-185.572	1/1:43:0,43:0:0:43:1536:-138.331,-12.9443,0	0/1:76:50,26:50:1756:26:936:-61.5866,0,-135.443	1/1:124:0,124:0:0:124:4431:-398.606,-37.3277,0	0/1:35:22,13:22:792:13:464:-31.5361,0,-61.0696	0/1:82:41,41:41:1464:41:1472:-107.194,0,-107.372	1/1:50:0,50:0:0:50:1796:-161.768,-15.0515,0	1/1:31:0,31:0:0:31:1112:-100.277,-9.33193,0	0/1:93:53,40:53:1874:40:1440:-101.703,0,-140.942	0/1:72:55,17:55:1976:17:604:-32.8116,0,-156.44	1/1:37:0,37:0:0:37:1313:-118.391,-11.1381,0	1/1:83:1,82:1:36:82:2952:-261.817,-21.3872,0
chr09	8121738	.	A	T	107164	PASS	AB=0.701308;ABP=944.601;AC=133;AF=0.707447;AN=188;AO=5106;CIGAR=1X;DP=5916;DPB=5916;DPRA=0;EPP=11090.5;EPPR=1761.9;GTI=18;LEN=1;MEANALT=1;MQM=59.9824;MQMR=59.784;NS=94;NUMALT=1;ODDS=1.06115;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=181254;QR=28531;RO=810;RPL=0;RPP=11090.5;RPPR=1761.9;RPR=5106;RUN=1;SAF=0;SAP=11090.5;SAR=5106;SRF=0;SRP=1761.9;SRR=810;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:3,45:3:104:45:1588:-133.507,-4.74663,0	1/1:62:0,62:0:0:62:2183:-196.734,-18.6639,0	1/1:203:0,203:0:0:203:7246:-652.195,-61.1091,0	1/1:212:0,212:0:0:212:7528:-677.546,-63.8184,0	0/1:32:7,25:7:244:25:884:-70.2454,0,-12.6665	0/1:8:1,7:1:36:7:244:-19.8911,0,-1.19003	1/1:43:0,43:0:0:43:1535:-138.442,-12.9443,0	0/1:92:13,79:13:455:79:2796:-224.185,0,-13.5872	0/1:41:12,29:12:432:29:1031:-80.7604,0,-26.6876	0/1:46:27,19:27:931:19:675:-47.2296,0,-70.2491	0/1:27:18,9:18:631:9:320:-21.0145,0,-48.968	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:28:10,18:10:360:18:635:-49.0481,0,-24.3155	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5716	0/1:41:18,23:18:636:23:811:-60.9677,0,-45.2258	0/1:25:9,16:9:316:16:568:-43.9261,0,-21.2531	0/1:12:2,10:2:72:10:351:-28.3143,0,-3.22436	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:127:25,102:25:888:102:3609:-286.789,0,-42.0073	0/1:29:14,15:14:492:15:536:-39.8449,0,-35.8823	0/1:60:13,47:13:450:47:1684:-133.785,0,-22.7667	1/1:136:0,136:0:0:136:4827:-434.589,-40.9401,0	0/1:68:8,60:8:284:60:2148:-173.117,0,-5.43331	1/1:78:0,78:0:0:78:2763:-248.913,-23.4803,0	0/1:117:45,72:45:1585:72:2564:-195.787,0,-107.709	1/1:199:0,199:0:0:199:7082:-637.444,-59.905,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70085	0/1:152:35,117:35:1227:117:4174:-330.086,0,-64.9703	0/1:95:13,82:13:446:82:2904:-232.997,0,-11.8685	0/1:89:19,70:19:667:70:2474:-196.122,0,-33.5606	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:64:27,37:27:960:37:1316:-99.4759,0,-67.4442	0/1:95:23,72:23:810:72:2556:-201.587,0,-44.5645	0/1:19:8,11:8:280:11:396:-30.2632,0,-19.8197	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	1/1:132:0,132:0:0:132:4711:-424.147,-39.736,0	0/1:15:8,7:8:275:7:252:-18.5135,0,-20.568	0/1:78:12,66:12:428:66:2331:-186.57,0,-15.3781	0/1:13:6,7:6:216:7:252:-19.0929,0,-15.8771	0/1:23:7,16:7:252:16:555:-43.3524,0,-16.1053	1/1:96:0,96:0:0:96:3417:-307.744,-28.8989,0	1/1:113:0,113:0:0:113:4014:-361.448,-34.0164,0	1/1:172:1,171:1:36:171:6055:-541.458,-48.1789,0	0/1:45:9,36:9:296:36:1275:-101.506,0,-13.4122	0/1:78:31,47:31:1116:47:1663:-126.476,0,-77.2667	1/1:91:0,91:0:0:91:3229:-290.831,-27.3937,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:186:0,186:0:0:186:6575:-591.837,-55.9916,0	1/1:145:0,145:0:0:145:5138:-462.564,-43.6494,0	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:106:35,71:35:1234:71:2538:-196.761,0,-79.4523	0/1:36:7,29:7:248:29:1040:-83.0773,0,-11.8271	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:27:6,21:6:216:21:743:-59.0655,0,-11.6627	0/1:56:16,40:16:572:40:1396:-109.077,0,-34.9557	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:126:69,57:69:2427:57:2019:-144.053,0,-180.742	1/1:87:7,80:7:252:80:2843:-233.085,-3.1654,0	0/1:37:7,30:7:239:30:1071:-85.5635,0,-10.7046	1/1:63:0,63:0:0:63:2224:-200.423,-18.9649,0	0/1:102:18,84:18:629:84:2991:-238.717,0,-26.2287	0/1:82:20,62:20:703:62:2185:-172.23,0,-38.9067	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	0/1:27:12,15:12:409:15:528:-39.7236,0,-29.0076	0/1:14:7,7:7:243:7:252:-18.8145,0,-17.8856	1/1:122:0,122:0:0:122:4358:-392.395,-36.7257,0	0/1:56:21,35:21:743:35:1247:-95.6764,0,-50.3357	1/1:169:0,169:0:0:169:6003:-540.378,-50.8741,0	1/1:143:0,143:0:0:143:5077:-457.077,-43.0473,0	0/1:112:19,93:19:676:93:3298:-263.325,0,-27.4526	0/1:61:30,31:30:1052:31:1104:-81.3078,0,-76.6276	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:109:0,109:0:0:109:3878:-349.216,-32.8123,0	0/1:93:19,74:19:663:74:2602:-206.433,0,-31.9977	1/1:185:0,185:0:0:185:6553:-589.858,-55.6906,0	0/1:29:12,17:12:420:17:612:-46.6836,0,-29.4042	1/1:35:0,35:0:0:35:1235:-111.453,-10.5361,0	0/1:14:4,10:4:140:10:356:-28.1668,0,-8.73016	1/1:49:0,49:0:0:49:1722:-155.264,-14.7505,0	0/1:9:4,5:4:144:5:171:-13.0162,0,-10.6043	0/1:27:12,15:12:417:15:536:-40.447,0,-29.7324	1/1:35:0,35:0:0:35:1230:-111.001,-10.5361,0	1/1:16:0,16:0:0:16:575:-52.0831,-4.81648,0	0/1:39:20,19:20:707:19:680:-49.789,0,-52.2144	0/1:20:6,14:6:216:14:483:-37.7767,0,-13.7699	1/1:138:0,138:0:0:138:4895:-440.704,-41.5421,0	1/1:38:0,38:0:0:38:1355:-122.25,-11.4391,0
chr09	8121755	.	T	C	8767.59	PASS	AB=0.294848;ABP=1003.56;AC=55;AF=0.292553;AN=188;AO=817;CIGAR=1X;DP=6098;DPB=6098;DPRA=0.582857;EPP=1777.1;EPPR=11459.7;GTI=18;LEN=1;MEANALT=1.01754;MQM=59.7821;MQMR=59.9746;NS=94;NUMALT=1;ODDS=1.30138;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29140;QR=189079;RO=5280;RPL=0;RPP=1777.1;RPPR=11468.4;RPR=817;RUN=1;SAF=0;SAP=1777.1;SAR=817;SRF=1;SRP=11459.7;SRR=5279;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:48,3:48:1720:3:108:0,-5.27736,-145.01	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/0:205:205,0:205:7328:0:0:0,-61.7111,-659.568	0/0:219:219,0:219:7838:0:0:0,-65.9256,-705.42	0/1:35:28,7:28:989:7:248:-12.1281,0,-78.786	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.454	0/1:96:83,13:83:2976:13:468:-13.5608,0,-239.173	0/1:44:32,12:32:1133:12:432:-25.7845,0,-89.0313	0/1:46:19,27:19:684:27:972:-73.9482,0,-48.0429	0/1:28:12,16:12:432:16:567:-42.9272,0,-30.7924	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:30:19,11:19:684:11:392:-26.5892,0,-52.8594	0/1:26:13,13:13:468:13:468:-34.6325,0,-34.6329	0/1:41:23,18:23:828:18:629:-44.5915,0,-62.5019	0/1:28:18,10:18:644:10:356:-23.9524,0,-49.8618	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:14:9,5:9:324:5:167:-11.1432,0,-25.2914	0/1:131:104,27:104:3727:27:968:-47.9955,0,-296.195	0/1:29:15,14:15:540:14:493:-35.9718,0,-40.2067	0/1:62:49,12:49:1764:12:432:-20.4985,0,-140.321	0/0:143:143,0:143:5106:0:0:0,-43.0473,-459.681	0/1:70:62,8:62:2228:8:288:-5.19531,0,-179.712	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/1:117:71,46:71:2556:46:1645:-113.11,0,-195.069	0/0:208:208,0:208:7432:0:0:0,-62.6142,-668.925	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:152:116,36:116:4176:36:1292:-70.821,0,-330.263	0/1:96:83,13:83:2971:13:468:-13.5604,0,-238.723	0/1:90:71,19:71:2548:19:676:-34.0729,0,-202.478	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:67:39,28:39:1389:28:996:-69.7696,0,-105.138	0/1:100:76,24:76:2694:24:851:-46.7465,0,-212.372	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:144:144,0:144:5148:0:0:0,-43.3483,-463.451	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/1:79:69,10:69:2457:10:356:-8.59947,0,-197.602	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:21:15,6:15:527:6:216:-13.4689,0,-41.4386	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:112:112,0:112:4009:0:0:0,-33.7154,-360.997	0/0:174:174,0:174:6216:0:0:0,-52.3792,-559.525	0/1:46:37,9:37:1328:9:324:-15.6561,0,-105.975	0/1:81:49,32:49:1756:32:1148:-79.2417,0,-133.941	0/0:98:98,0:98:3505:0:0:0,-29.5009,-315.658	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:189:189,0:189:6777:0:0:0,-56.8947,-609.999	0/0:156:156,0:156:5592:0:0:0,-46.9607,-503.402	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:111:75,36:75:2692:36:1279:-81.9969,0,-209.11	0/1:37:30,7:30:1080:7:248:-11.5261,0,-86.3751	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:27:21,6:21:756:6:212:-11.297,0,-60.2394	0/1:56:40,16:40:1440:16:572:-34.9557,0,-113.04	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:126:59,67:59:2105:67:2373:-175.885,0,-151.788	0/0:97:90,7:90:3208:7:252:0,-6.17569,-265.905	0/1:37:30,7:30:1080:7:252:-11.8908,0,-86.3751	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:105:87,18:87:3100:18:640:-26.3212,0,-247.427	0/1:83:62,21:62:2223:21:756:-43.3794,0,-175.347	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:27:15,12:15:536:12:420:-30.0062,0,-40.447	0/1:14:7,7:7:252:7:248:-18.3423,0,-18.8145	0/0:126:126,0:126:4505:0:0:0,-37.9298,-405.617	0/1:59:38,21:38:1368:21:756:-50.6065,0,-105.66	0/0:174:174,0:174:6221:0:0:0,-52.3792,-559.985	0/0:141:141,0:141:5076:0:0:0,-42.4452,-456.981	0/1:114:96,18:96:3421:18:648:-24.3345,0,-273.786	0/1:63:31,32:31:1112:32:1152:-85.0253,0,-81.4265	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:109:109,0:109:3901:0:0:0,-32.8123,-351.282	0/1:95:74,21:74:2664:21:734:-37.7826,0,-211.407	0/0:192:192,0:192:6896:0:0:0,-57.7978,-620.705	0/1:31:17,14:17:612:14:491:-35.1892,0,-46.0815	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:15:11,4:11:388:4:140:-8.42913,0,-30.7419	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:29:17,12:17:612:12:424:-29.7665,0,-46.6836	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.814	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4119	0/1:39:20,19:20:720:19:684:-50.1502,0,-53.3886	0/1:21:14,7:14:500:7:243:-15.8859,0,-39.0145	0/0:147:147,0:147:5245:0:0:0,-44.2514,-472.187	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492
chr09	8121782	.	T	C	8914.68	PASS	AB=0.295141;ABP=1008.36;AC=55;AF=0.292553;AN=188;AO=823;CIGAR=1X;DP=6162;DPB=6162;DPRA=0.580857;EPP=1790.13;EPPR=11535.8;GTI=18;LEN=1;MEANALT=1;MQM=59.8153;MQMR=59.9805;NS=94;NUMALT=1;ODDS=1.0184;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29398;QR=190912;RO=5339;RPL=823;RPP=1790.13;RPPR=11544.4;RPR=0;RUN=1;SAF=0;SAP=1790.13;SAR=823;SRF=1;SRP=11587.8;SRR=5338;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:52,3:52:1845:3:108:0,-6.48148,-156.253	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:205:205,0:205:7364:0:0:0,-61.7111,-662.805	0/0:219:219,0:219:7793:0:0:0,-65.9256,-701.386	0/1:35:28,7:28:993:7:248:-12.1281,0,-79.1465	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.454	0/1:95:83,12:83:2969:12:428:-10.261,0,-238.843	0/1:42:31,11:31:1093:11:396:-23.3395,0,-86.0344	0/1:48:21,27:21:756:27:972:-73.3461,0,-53.9178	0/1:29:12,17:12:432:17:599:-45.4884,0,-30.4913	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:29:19,10:19:684:10:360:-24.0144,0,-53.1605	0/1:26:13,13:13:453:13:468:-34.6325,0,-33.2728	0/1:41:23,18:23:828:18:644:-45.9484,0,-62.5019	0/1:28:18,10:18:648:10:360:-24.3155,0,-50.223	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:134:107,27:107:3817:27:957:-46.0989,0,-303.389	0/1:30:16,14:16:576:14:504:-36.6668,0,-43.1441	0/1:62:49,13:49:1764:13:468:-23.7958,0,-140.38	0/0:144:144,0:144:5161:0:0:0,-43.3483,-464.628	0/1:70:62,8:62:2224:8:288:-5.19531,0,-179.352	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/1:123:74,49:74:2641:49:1745:-120.293,0,-200.905	0/0:210:210,0:210:7525:0:0:0,-63.2163,-677.288	0/1:12:8,4:8:288:4:140:-9.33205,0,-22.655	0/1:153:117,36:117:4166:36:1296:-70.8802,0,-329.063	0/1:96:83,13:83:2957:13:468:-13.5604,0,-237.464	0/1:87:69,18:69:2480:18:648:-32.4623,0,-197.263	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:66:39,27:39:1396:27:968:-67.5632,0,-106.071	0/1:99:76,23:76:2702:23:828:-44.9822,0,-213.392	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:144:144,0:144:5123:0:0:0,-43.3483,-461.21	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:80:69,11:69:2480:11:377:-10.1754,0,-199.371	0/1:14:8,6:8:280:6:216:-15.5761,0,-21.3157	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	0/0:97:97,0:97:3441:0:0:0,-29.1999,-309.904	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/0:185:185,0:185:6606:0:0:0,-55.6905,-594.602	0/1:46:38,8:38:1368:8:288:-12.42,0,-109.573	0/1:83:50,33:50:1796:33:1184:-81.8781,0,-136.937	0/0:98:98,0:98:3501:0:0:0,-29.5009,-315.299	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:191:191,0:191:6849:0:0:0,-57.4967,-616.476	0/0:155:155,0:155:5485:0:0:0,-46.6596,-493.775	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:111:74,37:74:2660:37:1313:-85.0542,0,-206.231	0/1:39:32,7:32:1137:7:252:-11.2888,0,-90.8968	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:27:21,6:21:752:6:216:-11.6627,0,-59.8784	0/1:57:41,16:41:1472:16:576:-35.0163,0,-115.617	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:126:57,69:57:2044:69:2435:-181.459,0,-146.302	0/0:97:91,6:91:3238:6:216:0,-9.41415,-271.852	0/1:39:32,7:32:1152:7:252:-11.2888,0,-92.25	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:104:85,19:85:3037:19:676:-29.8609,0,-242.251	0/1:83:62,21:62:2213:21:748:-42.6575,0,-174.443	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:27:15,12:15:536:12:426:-30.5499,0,-40.447	0/1:14:7,7:7:252:7:237:-17.4408,0,-18.8145	0/0:126:126,0:126:4513:0:0:0,-37.9298,-406.336	0/1:59:37,22:37:1324:22:784:-53.1231,0,-101.701	0/0:175:175,0:175:6224:0:0:0,-52.6802,-560.254	0/0:144:144,0:144:5172:0:0:0,-43.3483,-465.618	0/1:113:94,19:94:3365:19:680:-27.5128,0,-269.048	0/1:64:31,33:31:1116:33:1188:-87.9627,0,-81.4858	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:114:114,0:114:4073:0:0:0,-34.3174,-366.755	0/1:94:75,19:75:2696:19:680:-33.2323,0,-214.587	0/0:192:192,0:192:6855:0:0:0,-57.7978,-617.016	0/1:31:17,14:17:612:14:504:-36.3662,0,-46.0815	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/0:50:50,0:50:1766:0:0:0,-15.0515,-159.219	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:30:18,12:18:648:12:432:-30.1903,0,-49.621	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.819	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5276	0/1:42:21,21:21:752:21:737:-54.0074,0,-55.363	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/0:143:143,0:143:5114:0:0:0,-43.0473,-460.399	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852
chr09	8406315	.	T	C	173621	PASS	AB=0.478433;ABP=27.5507;AC=130;AF=0.691489;AN=188;AO=6682;CIGAR=1X;DP=9862;DPB=9862;DPRA=0;EPP=14512.8;EPPR=6888.75;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9783;MQMR=60;NS=94;NUMALT=1;ODDS=0.828042;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=236599;QR=113531;RO=3175;RPL=3289;RPP=6.52521;RPPR=48.8889;RPR=3393;RUN=1;SAF=3289;SAP=6.52521;SAR=3393;SRF=1459;SRP=48.1831;SRR=1716;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:7,19:7:252:19:667:-52.5278,0,-15.2022	1/1:144:0,144:0:0:144:5125:-461.392,-43.3483,0	1/1:145:0,145:0:0:145:5150:-463.639,-43.6494,0	1/1:234:3,230:3:108:230:8144:-722.905,-60.4246,0	0/1:27:13,14:13:464:14:486:-35.9399,0,-33.9697	0/1:35:17,18:17:612:18:639:-47.3022,0,-44.8774	1/1:132:0,132:0:0:132:4696:-422.8,-39.736,0	0/1:103:53,50:53:1896:50:1770:-128.576,0,-139.912	0/1:123:63,60:63:2260:60:2149:-156.65,0,-166.636	0/1:141:67,74:67:2400:74:2624:-193.962,0,-173.812	0/1:90:48,42:48:1719:42:1494:-107.662,0,-127.902	1/1:140:0,140:0:0:140:4920:-442.955,-42.1442,0	0/1:133:81,52:81:2899:52:1831:-125.032,0,-221.108	0/1:106:51,55:51:1816:55:1932:-142.246,0,-131.812	0/1:141:79,62:79:2816:62:2206:-156.359,0,-211.232	0/1:100:40,60:40:1432:60:2116:-160.604,0,-99.0746	0/1:83:38,45:38:1364:45:1600:-119.305,0,-98.0752	1/1:73:0,73:0:0:73:2573:-231.82,-21.9752,0	0/1:65:34,31:34:1216:31:1108:-80.464,0,-90.1796	0/1:122:72,50:72:2580:50:1779:-123.667,0,-195.724	0/1:210:119,91:119:4260:91:3241:-228.695,0,-320.362	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	1/1:94:0,94:0:0:94:3354:-302.076,-28.2968,0	0/1:52:20,32:20:711:32:1133:-86.6231,0,-48.6621	1/1:57:0,57:0:0:57:2035:-183.422,-17.1587,0	0/1:277:135,142:135:4840:142:5064:-372.519,0,-352.368	1/1:180:0,180:0:0:180:6364:-572.847,-54.1854,0	0/1:79:33,46:33:1188:46:1621:-122.396,0,-83.4472	0/1:189:95,94:95:3399:94:3349:-244.732,0,-249.23	0/1:116:40,76:40:1432:76:2680:-206.523,0,-94.2581	0/1:120:61,59:61:2183:59:2111:-154.135,0,-160.612	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:4:1,3:1:36:3:100:-8.12632,0,-2.39415	0/1:383:208,175:208:7411:175:6163:-439.481,0,-551.743	0/1:42:17,25:17:612:25:891:-67.8655,0,-42.7702	0/1:119:72,47:72:2588:47:1637:-111.792,0,-197.346	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:162:2,160:2:72:160:5674:-503.942,-41.9301,0	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.937	0/1:73:47,26:47:1688:26:927:-61.7722,0,-130.232	0/1:148:70,78:70:2508:78:2739:-202.2,0,-181.42	0/1:119:66,53:66:2364:53:1823:-128.525,0,-177.196	1/1:86:0,86:0:0:86:3041:-273.918,-25.8886,0	1/1:45:0,45:0:0:45:1595:-143.84,-13.5464,0	1/1:110:0,110:0:0:110:3893:-350.562,-33.1133,0	0/1:75:34,41:34:1216:41:1457:-108.847,0,-87.1693	0/1:156:85,71:85:3018:71:2528:-180.81,0,-224.888	1/1:70:0,70:0:0:70:2485:-223.902,-21.0721,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:120:0,120:0:0:120:4242:-381.961,-36.1236,0	1/1:53:0,53:0:0:53:1891:-170.468,-15.9546,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:151:80,71:80:2860:71:2493:-179.16,0,-212.182	0/1:31:13,18:13:464:18:648:-49.32,0,-32.7656	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:107:48,59:48:1716:59:2076:-154.898,0,-122.515	0/1:168:78,90:78:2772:90:3157:-233.782,0,-199.147	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:137:75,62:75:2681:62:2200:-157.022,0,-200.292	0/1:171:84,87:84:2991:87:3107:-228.381,0,-217.946	0/1:79:32,47:32:1136:47:1684:-128.066,0,-78.7675	1/1:96:0,95:0:0:95:3341:-300.548,-28.5979,0	0/1:149:81,68:81:2904:68:2422:-173.382,0,-216.742	0/1:107:81,26:81:2904:26:932:-51.9887,0,-229.385	1/1:59:0,59:0:0:59:2099:-189.179,-17.7608,0	1/1:70:0,70:0:0:70:2479:-223.364,-21.0721,0	0/1:163:92,71:92:3279:71:2520:-177.985,0,-246.262	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	1/1:88:0,87:0:0:87:3081:-277.154,-26.1896,0	0/1:118:61,56:61:2175:56:1983:-143.301,0,-160.573	1/1:171:0,171:0:0:171:6028:-542.632,-51.4761,0	1/1:145:1,144:1:36:144:5114:-456.805,-40.0511,0	0/1:32:17,15:17:608:15:500:-35.6383,0,-45.4191	0/1:238:135,103:135:4820:103:3654:-257.419,0,-362.309	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:117:0,117:0:0:117:4169:-375.394,-35.2205,0	0/1:76:49,27:49:1751:27:968:-64.5591,0,-134.995	1/1:213:0,213:0:0:213:7571:-681.43,-64.1194,0	0/1:194:105,89:105:3772:89:3148:-225.145,0,-281.278	1/1:112:0,111:0:0:111:3936:-354.182,-33.4143,0	0/1:114:64,50:64:2287:50:1730:-121.663,0,-171.774	1/1:284:1,283:1:36:283:9959:-892.659,-81.8942,0	0/1:66:30,36:30:1068:36:1264:-94.1822,0,-76.5641	0/1:132:73,59:73:2612:59:2075:-147.285,0,-195.592	1/1:125:0,125:0:0:125:4404:-396.537,-37.6288,0	1/1:45:0,45:0:0:45:1579:-142.397,-13.5464,0	0/1:127:60,67:60:2144:67:2360:-174.418,0,-154.997	0/1:143:83,60:83:2963:60:2134:-149.28,0,-223.856	1/1:138:0,138:0:0:138:4879:-439.266,-41.5421,0	1/1:262:1,261:1:36:261:9266:-830.317,-75.2716,0
chr09	8671643	.	C	T	139742	PASS	AB=0.481524;ABP=23.7928;AC=127;AF=0.682796;AN=186;AO=7464;CIGAR=1X;DP=11109;DPB=11109;DPRA=0;EPP=16210.9;EPPR=7885.46;GTI=0;LEN=1;MEANALT=1.11828;MQM=44.0411;MQMR=39.6241;NS=93;NUMALT=1;ODDS=2.82553;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=265917;QR=130117;RO=3634;RPL=0;RPP=16210.9;RPPR=7894.14;RPR=7464;RUN=1;SAF=7464;SAP=16210.9;SAR=0;SRF=3633;SRP=7885.46;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:22,14:22:792:14:470:-31.7807,0,-56.6866	1/1:211:0,211:0:0:211:7452:-670.722,-63.5173,0	1/1:123:0,123:0:0:123:4386:-394.842,-37.0267,0	1/1:152:0,152:0:0:152:5422:-460.774,-45.7566,0	0/1:58:48,10:48:1708:10:360:-13.5591,0,-131.588	0/1:97:55,42:55:1968:42:1485:-104.514,0,-138.211	1/1:134:0,134:0:0:134:4778:-406.881,-40.338,0	0/1:183:69,113:69:2484:113:4048:-309.352,0,-153.348	0/1:106:60,46:60:2152:46:1618:-113.996,0,-150.245	0/1:105:49,56:49:1756:56:1993:-136.775,0,-120.64	0/1:114:55,59:55:1963:59:2107:-145.007,0,-135.526	1/1:63:0,63:0:0:63:2254:-203.123,-18.9649,0	0/1:99:36,63:36:1288:63:2260:-173.861,0,-79.4495	0/1:168:81,87:81:2900:87:3124:-212.856,0,-199.13	0/1:90:50,39:50:1796:39:1404:-90.1834,0,-128.132	0/1:77:41,36:41:1472:36:1279:-86.0531,0,-103.682	0/1:98:49,49:49:1760:49:1760:-129.183,0,-119.289	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	0/1:87:43,44:43:1548:44:1550:-113.599,0,-105.084	0/1:406:217,189:217:7750:189:6731:-448.322,0,-544.886	0/1:228:98,130:98:3512:130:4632:-325.556,0,-234.83	0/1:121:93,28:93:3317:28:989:-47.693,0,-248.734	1/1:62:1,61:1:36:61:2170:-181.099,-15.2094,0	0/1:155:90,65:90:3220:65:2336:-152.547,0,-230.486	1/1:75:0,75:0:0:75:2669:-227.454,-22.5773,0	0/1:280:145,134:145:5184:134:4725:-317.351,0,-363.405	1/1:281:1,280:1:36:280:9923:-838.886,-81.1087,0	0/1:66:33,33:33:1188:33:1188:-81.1927,0,-83.2135	0/1:386:216,169:216:7721:169:6019:-393.7,0,-547.481	0/1:160:76,84:76:2728:84:2999:-207.142,0,-188.909	0/1:157:89,67:89:3192:67:2408:-156.153,0,-228.253	1/1:6:0,6:0:0:6:208:-18.1981,-1.80618,0	0/1:34:21,13:21:756:13:464:-28.5596,0,-54.8122	.:.:.:.:.:.:.:.	0/1:5:4,1:4:140:1:36:-2.09312,0,-10.7655	0/1:7:6,1:6:212:1:36:-1.49107,0,-16.3488	0/1:237:124,113:124:4460:113:4056:-272.349,0,-310.871	0/1:118:57,61:57:2048:61:2176:-150.187,0,-142.587	0/1:109:57,52:57:2044:52:1868:-135.587,0,-139.376	1/1:3:0,3:0:0:3:93:-8.27557,-0.90309,0	1/1:168:1,167:1:36:167:5895:-496.426,-47.0923,0	0/1:52:20,32:20:720:32:1122:-80.2132,0,-46.9738	0/1:131:73,58:73:2628:58:2084:-137.677,0,-184.4	0/1:91:41,50:41:1476:50:1781:-123.842,0,-100.297	0/1:85:41,44:41:1472:44:1568:-108.252,0,-101.837	1/1:69:0,69:0:0:69:2472:-210.048,-20.7711,0	1/1:123:0,123:0:0:123:4374:-393.093,-37.0267,0	1/1:195:1,193:1:36:193:6827:-576.523,-55.221,0	0/1:123:53,70:53:1889:70:2471:-172.817,0,-126.7	0/1:188:91,97:91:3252:97:3480:-238.748,0,-224.789	1/1:201:0,201:0:0:201:7154:-605.709,-60.507,0	0/1:7:3,4:3:108:4:144:-10.4269,0,-7.58982	1/1:204:0,204:0:0:204:7278:-653.795,-61.4101,0	1/1:63:0,63:0:0:63:2237:-190.478,-18.9649,0	0/1:18:11,7:11:392:7:252:-17.6104,0,-28.118	0/1:184:85,99:85:3036:99:3535:-242.837,0,-208.548	0/1:36:26,10:26:928:10:360:-20.1818,0,-69.5968	0/1:5:3,2:3:108:2:72:-4.93129,0,-8.16742	0/1:18:9,9:9:324:9:320:-22.2922,0,-22.8801	0/1:107:61,46:61:2173:46:1637:-106.79,0,-155.608	0/1:158:86,72:86:3088:72:2580:-171.595,0,-217.634	1/1:8:0,8:0:0:8:288:-24.6487,-2.40824,0	0/1:161:76,85:76:2712:85:3029:-208.176,0,-185.924	0/1:241:119,122:119:4265:122:4332:-295.849,0,-293.146	0/1:87:44,43:44:1580:43:1540:-104.925,0,-110.958	1/1:108:0,107:0:0:107:3836:-325.311,-32.2102,0	0/1:91:47,43:47:1688:43:1525:-102.67,0,-117.501	0/1:191:137,54:137:4905:54:1899:-103.738,0,-365.199	1/1:60:0,60:0:0:60:2152:-183.908,-18.0618,0	1/1:121:0,121:0:0:121:4314:-388.434,-36.4246,0	0/1:129:66,63:66:2376:63:2241:-151.486,0,-165.93	0/1:29:14,15:14:504:15:521:-36.4059,0,-35.0487	1/1:110:0,110:0:0:110:3879:-349.305,-33.1133,0	0/1:103:46,57:46:1652:57:2033:-152.234,0,-107.417	1/1:203:0,202:0:0:202:7198:-612.415,-60.8081,0	1/1:198:0,198:0:0:198:7060:-599.12,-59.6039,0	0/1:90:52,38:52:1838:38:1358:-95.4088,0,-129.01	0/1:147:57,89:57:2044:89:3177:-241.991,0,-128.865	1/1:15:1,14:1:36:14:500:-41.9486,-1.12785,0	1/1:150:1,149:1:36:149:5348:-451.013,-41.6738,0	0/1:156:79,77:79:2813:77:2730:-198.98,0,-192.195	1/1:238:0,237:0:0:237:8472:-718.279,-71.3441,0	0/1:132:64,68:64:2269:68:2417:-164.929,0,-157.047	1/1:94:0,94:0:0:94:3353:-283.961,-28.2968,0	0/1:84:48,36:48:1716:36:1292:-84.545,0,-123.541	1/1:146:1,145:1:36:145:5176:-435.376,-40.5628,0	0/1:53:20,33:20:716:33:1184:-90.9137,0,-44.5406	0/1:92:46,46:46:1647:46:1652:-121.274,0,-111.873	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:88:0,88:0:0:88:3115:-266.381,-26.4906,0	0/1:177:88,89:88:3155:89:3174:-215.912,0,-217.822	0/1:56:37,19:37:1332:19:684:-41.1701,0,-97.9611	1/1:153:0,153:0:0:153:5435:-461.915,-46.0576,0	1/1:129:0,129:0:0:129:4632:-393.119,-38.8329,0
chr09	8730919	.	T	C	76034.1	PASS	AB=0.479761;ABP=28.5886;AC=61;AF=0.324468;AN=188;AO=3473;CIGAR=1X;DP=11767;DPB=11767;DPRA=1.26102;EPP=7544.53;EPPR=17989.3;GTI=1;LEN=1;MEANALT=1.02817;MQM=59.9853;MQMR=59.9837;NS=94;NUMALT=1;ODDS=0.0224667;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121902;QR=295937;RO=8291;RPL=1667;RPP=15.0906;RPPR=21.4027;RPR=1806;RUN=1;SAF=1667;SAP=15.0906;SAR=1806;SRF=4013;SRP=21.4027;SRR=4278;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:104:60,44:60:2134:44:1549:-108.393,0,-161.02	0/0:186:185,1:185:6624:1:36:0,-52.3933,-592.641	0/0:188:186,2:186:6634:2:72:0,-49.7569,-590.301	0/0:283:282,0:282:10092:0:0:0,-84.8905,-907.849	0/1:100:57,43:57:2039:43:1536:-108.43,0,-153.661	0/1:84:47,37:47:1631:37:1277:-89.9391,0,-121.785	0/0:121:121,0:121:4297:0:0:0,-36.4246,-386.906	0/1:222:120,102:120:4262:102:3639:-260.887,0,-316.921	0/1:196:115,81:115:4120:81:2843:-197.104,0,-311.982	0/1:112:60,52:60:2147:52:1824:-130.722,0,-159.781	0/1:128:57,71:57:2048:71:2465:-183.569,0,-146.06	0/0:179:179,0:179:6373:0:0:0,-53.8844,-573.663	0/1:139:78,61:78:2775:61:2090:-146.523,0,-208.148	0/1:125:50,74:50:1772:74:2503:-187.87,0,-122.112	0/1:126:65,61:65:2336:61:2166:-157.276,0,-172.569	0/1:127:64,63:64:2300:63:2171:-157.423,0,-168.803	0/1:94:57,37:57:2040:37:1283:-87.4703,0,-155.575	0/0:63:63,0:63:2246:0:0:0,-18.9649,-202.402	0/1:83:40,43:40:1427:43:1503:-110.577,0,-103.741	0/1:146:82,64:82:2936:64:2266:-160.241,0,-220.524	0/1:191:101,90:101:3566:90:3181:-229.016,0,-263.649	0/1:42:15,27:15:536:27:959:-73.9821,0,-35.9316	0/0:134:132,2:132:4709:2:72:0,-33.5013,-417.128	0/1:130:66,64:66:2335:64:2226:-161.466,0,-171.273	0/0:114:114,0:114:4079:0:0:0,-34.3174,-367.296	0/1:360:193,167:193:6865:167:5903:-423.012,0,-509.547	0/0:215:214,1:214:7639:1:36:0,-61.1232,-683.945	0/1:86:46,40:46:1648:40:1394:-99.8644,0,-122.72	0/1:235:130,105:130:4615:105:3731:-265.25,0,-344.773	0/1:120:76,44:76:2720:44:1541:-102.856,0,-208.92	0/1:137:73,64:73:2612:64:2239:-160.528,0,-194.087	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:1,7:1:36:7:239:-19.4345,0,-1.19003	0/1:4:2,2:2:68:2:68:-5.25359,0,-5.25359	0/1:381:207,174:207:7392:174:6035:-428.573,0,-550.634	0/1:122:68,54:68:2425:54:1927:-136.981,0,-181.779	0/1:105:59,46:59:2120:46:1604:-113.038,0,-159.46	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:176:176,0:176:6282:0:0:0,-52.9813,-565.475	0/1:61:25,36:25:900:36:1256:-94.9766,0,-62.9582	0/1:202:105,97:105:3716:97:3431:-248.196,0,-273.832	0/1:145:68,77:68:2436:77:2648:-194.916,0,-175.846	0/1:128:60,68:60:2113:68:2382:-176.1,0,-151.906	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.334	0/0:223:218,5:218:7785:5:180:0,-50.5776,-684.126	0/1:67:32,35:32:1129:35:1260:-93.5365,0,-81.7473	0/1:178:74,104:74:2649:104:3689:-278.631,0,-185.071	0/0:140:139,1:139:4983:1:36:0,-38.5459,-445.018	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:188:187,1:187:6696:1:36:0,-52.9954,-599.118	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:123:62,61:62:2205:61:2136:-155.477,0,-161.687	0/1:41:24,17:24:860:17:603:-42.2573,0,-65.3796	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/1:98:51,47:51:1815:47:1602:-114.961,0,-134.13	0/1:183:96,87:96:3416:87:3015:-216.491,0,-251.788	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:181:91,90:91:3259:90:3189:-232.748,0,-239.043	0/1:190:117,73:117:4192:73:2581:-175.343,0,-320.265	0/1:87:41,46:41:1450:46:1623:-120.169,0,-104.605	0/0:84:84,0:84:2985:0:0:0,-25.2865,-268.882	0/1:172:91,81:91:3251:81:2870:-206.757,0,-240.989	0/1:94:37,57:37:1332:57:2028:-154.496,0,-91.8856	0/0:95:95,0:95:3387:0:0:0,-28.5978,-305.046	0/0:119:118,1:118:4220:1:36:0,-32.2243,-376.383	0/1:169:103,66:103:3685:66:2296:-156.024,0,-280.977	0/1:27:13,14:13:464:14:489:-36.2111,0,-33.9697	0/0:118:118,0:118:4161:0:0:0,-35.5215,-374.672	0/1:137:67,70:67:2365:70:2471:-181.401,0,-171.864	0/0:207:207,0:207:7384:0:0:0,-62.3132,-664.608	0/0:139:139,0:139:4969:0:0:0,-41.8432,-447.358	0/1:165:79,85:79:2823:85:2994:-219.962,0,-204.58	0/1:144:66,78:66:2368:78:2743:-203.761,0,-170.03	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/1:63:28,35:28:999:35:1226:-91.6774,0,-71.2596	0/0:193:191,2:191:6808:2:72:0,-51.2621,-605.953	0/1:142:67,75:67:2404:75:2630:-194.2,0,-173.87	0/0:111:110,1:110:3940:1:36:0,-29.8161,-351.19	0/1:138:65,73:65:2336:73:2579:-190.818,0,-168.957	0/0:290:288,2:288:10303:2:72:0,-80.462,-920.355	0/1:55:35,20:35:1260:20:704:-47.1279,0,-97.1488	0/1:135:74,61:74:2634:61:2142:-152.408,0,-196.667	0/0:182:181,1:181:6471:1:36:0,-51.1892,-578.873	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/1:177:95,82:95:3345:82:2849:-203.368,0,-247.98	0/1:150:60,90:60:2131:90:3188:-241.988,0,-146.903	0/0:166:166,0:166:5963:0:0:0,-49.971,-536.774	0/0:249:249,0:249:8914:0:0:0,-74.9565,-802.241
chr09	8731010	.	T	C	110469	PASS	AB=0.492317;ABP=5.44595;AC=125;AF=0.679348;AN=184;AO=5598;CIGAR=1X;DP=8037;DPB=8037;DPRA=19.8222;EPP=12158.9;EPPR=5281.86;GTI=1;LEN=1;MEANALT=1.06667;MQM=59.9836;MQMR=59.9872;NS=92;NUMALT=1;ODDS=0.109738;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195996;QR=86500;RO=2431;RPL=5598;RPP=12158.9;RPPR=5281.86;RPR=0;RUN=1;SAF=5598;SAP=12158.9;SAR=0;SRF=2431;SRP=5281.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:35,30:35:1239:30:1003:-71.0024,0,-92.2467	1/1:54:0,54:0:0:54:1908:-171.995,-16.2556,0	1/1:124:0,124:0:0:124:4349:-391.587,-37.3277,0	1/1:195:0,194:0:0:194:6858:-616.935,-58.3998,0	0/1:22:18,4:18:644:4:144:-6.69096,0,-51.6679	0/1:64:37,27:37:1328:27:960:-67.4504,0,-100.556	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:127:72,54:72:2551:54:1904:-133.346,0,-191.549	0/1:97:38,59:38:1364:59:2067:-157.099,0,-93.8608	0/1:64:32,32:32:1139:32:1127:-82.4715,0,-83.5387	0/1:60:21,39:21:752:39:1337:-102.561,0,-49.9445	1/1:107:0,107:0:0:107:3733:-336.178,-32.2102,0	0/1:77:40,37:40:1436:37:1276:-91.9581,0,-106.358	0/1:82:50,32:50:1757:32:1121:-76.5113,0,-133.727	0/1:70:38,32:38:1355:32:1135:-81.386,0,-101.178	0/1:58:29,29:29:1036:29:1010:-73.7498,0,-76.0942	0/1:43:19,24:19:665:24:837:-62.7014,0,-47.2285	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:30:15,15:15:536:15:531:-39.091,0,-39.5439	0/1:148:62,86:62:2228:86:3057:-230.806,0,-156.231	0/1:141:65,76:65:2290:76:2678:-198.821,0,-163.913	0/1:109:65,44:65:2305:44:1562:-108.058,0,-174.897	1/1:97:0,97:0:0:97:3412:-307.294,-29.1999,0	0/1:58:23,35:23:824:35:1237:-94.1732,0,-57.0236	1/1:111:2,109:2:72:109:3760:-331.766,-26.5776,0	0/1:215:115,99:115:4110:99:3477:-248.356,0,-305.304	1/1:258:3,255:3:108:255:8887:-789.754,-67.5906,0	0/1:39:18,21:18:631:21:721:-53.467,0,-45.3755	0/1:221:83,138:83:2975:138:4819:-367.342,0,-201.454	0/1:97:30,67:30:1057:67:2378:-185.077,0,-66.2391	0/1:105:39,66:39:1396:66:2310:-176.549,0,-94.3309	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	0/1:7:2,5:2:68:5:171:-13.6182,0,-4.3505	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:173:86,87:86:3058:87:3007:-218.784,0,-223.371	0/1:156:96,60:96:3439:60:2087:-141.134,0,-262.762	0/1:42:16,26:16:572:26:908:-69.3892,0,-39.1702	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:121:0,121:0:0:121:4252:-382.809,-36.4246,0	0/1:37:14,23:14:504:23:807:-61.8111,0,-34.56	0/1:160:81,79:81:2878:79:2737:-198.406,0,-211.089	0/1:68:46,22:46:1640:22:788:-50.7748,0,-127.419	0/1:58:26,32:26:906:32:1130:-84.5472,0,-64.3937	1/1:81:0,81:0:0:81:2847:-256.466,-24.3834,0	1/1:82:0,82:0:0:82:2870:-258.538,-24.6845,0	1/1:163:0,162:0:0:162:5686:-511.501,-48.7669,0	0/1:89:46,43:46:1635:43:1505:-108.948,0,-120.646	0/1:108:56,52:56:1992:52:1841:-133.457,0,-147.043	1/1:137:2,135:2:72:135:4730:-419.027,-34.4044,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:114:0,111:0:0:111:3901:-350.924,-33.4143,0	1/1:108:0,108:0:0:108:3796:-341.842,-32.5112,0	1/1:6:0,6:0:0:6:186:-17.0436,-1.80618,0	0/1:174:104,70:104:3628:70:2421:-165.764,0,-274.347	0/1:41:25,16:25:872:16:565:-38.8373,0,-66.4514	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:9:1,8:1:32:8:284:-23.1941,0,-0.490043	0/1:78:45,33:45:1597:33:1157:-80.9541,0,-120.538	0/1:101:43,58:43:1527:58:1997:-149.596,0,-107.318	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:119:58,61:58:2063:61:2110:-154.342,0,-150.118	0/1:147:73,74:73:2620:74:2636:-193.236,0,-191.796	0/1:65:33,32:33:1171:32:1139:-83.2514,0,-86.1297	1/1:79:0,79:0:0:79:2756:-248.278,-23.7814,0	0/1:118:58,60:58:2079:60:2078:-151.761,0,-151.858	0/1:164:114,50:114:4071:50:1753:-108.678,0,-317.208	1/1:58:0,58:0:0:58:1997:-180,-17.4597,0	1/1:46:0,46:0:0:46:1617:-145.817,-13.8474,0	0/1:41:19,22:19:676:22:780:-58.1799,0,-48.8258	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:121:0,121:0:0:121:4270:-384.452,-36.4246,0	0/1:88:55,33:55:1958:33:1145:-76.8628,0,-150.003	1/1:129:0,129:0:0:129:4532:-408.049,-38.8329,0	1/1:154:0,154:0:0:154:5478:-493.149,-46.3586,0	0/1:113:65,47:65:2323:47:1658:-115.423,0,-175.254	0/1:65:32,33:32:1148:33:1160:-85.137,0,-84.0629	.:.:.:.:.:.:.:.	1/1:76:1,75:1:36:75:2614:-231.91,-19.28,0	0/1:122:68,54:68:2418:54:1906:-135.087,0,-181.15	1/1:224:3,221:3:104:221:7736:-686.581,-57.7279,0	0/1:73:35,38:35:1239:38:1325:-97.5722,0,-89.8385	1/1:69:0,69:0:0:69:2412:-217.336,-20.7711,0	0/1:48:17,31:17:608:31:1075:-82.6028,0,-40.6026	1/1:124:1,123:1:36:123:4262:-380.165,-33.7294,0	0/1:23:9,14:9:324:14:468:-35.5142,0,-22.5822	0/1:59:30,29:30:1064:29:993:-71.9162,0,-78.3105	1/1:88:0,88:0:0:88:3048:-274.552,-26.4906,0	1/1:42:0,42:0:0:42:1461:-131.782,-12.6433,0	0/1:121:62,59:62:2207:59:2009:-144.652,0,-162.364	0/1:78:44,34:44:1561:34:1192:-84.102,0,-117.299	1/1:142:0,142:0:0:142:4980:-448.351,-42.7463,0	1/1:97:1,96:1:36:96:3339:-297.129,-25.6016,0
chr09	8731015	.	C	T	112629	PASS	AB=0.490316;ABP=6.87964;AC=124;AF=0.673913;AN=184;AO=5566;CIGAR=1X;DP=8003;DPB=8003;DPRA=19.7383;EPP=12089.4;EPPR=5284.03;GTI=2;LEN=1;MEANALT=1.03333;MQM=59.9858;MQMR=59.9864;NS=92;NUMALT=1;ODDS=1.32831;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197814;QR=86271;RO=2432;RPL=5565;RPP=12080.7;RPPR=5284.03;RPR=1;RUN=1;SAF=5565;SAP=12080.7;SAR=1;SRF=2432;SRP=5284.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:36,27:36:1277:27:964:-68.1119,0,-96.2662	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:126:0,126:0:0:126:4456:-401.211,-37.9298,0	1/1:193:0,193:0:0:193:6875:-618.817,-58.0988,0	0/1:23:19,4:19:661:4:144:-6.38993,0,-52.8879	0/1:65:37,28:37:1324:28:986:-69.4852,0,-99.8951	1/1:35:1,34:1:36:34:1201:-104.795,-6.93778,0	0/1:132:79,53:79:2783:53:1889:-130.552,0,-210.972	0/1:95:39,56:39:1373:56:1997:-151.404,0,-95.2687	0/1:64:31,33:31:1104:33:1184:-87.6024,0,-80.391	0/1:60:21,39:21:743:39:1367:-105.266,0,-49.1315	1/1:104:0,104:0:0:104:3699:-333.113,-31.3071,0	0/1:77:38,39:38:1360:39:1370:-100.418,0,-99.5213	0/1:82:50,32:50:1775:32:1145:-78.6747,0,-135.348	0/1:69:37,32:37:1324:32:1144:-82.4984,0,-98.691	0/1:59:29,30:29:1029:30:1072:-79.0317,0,-75.1604	0/1:43:19,24:19:680:24:847:-63.6044,0,-48.5849	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:31:16,15:16:568:15:531:-38.79,0,-42.1199	0/1:152:61,88:61:2176:88:3143:-237.882,0,-150.893	0/1:137:66,71:66:2355:71:2532:-186.891,0,-170.967	0/1:112:65,47:65:2302:47:1671:-116.961,0,-173.725	1/1:97:0,97:0:0:97:3439:-309.725,-29.1999,0	0/1:58:23,35:23:828:35:1234:-93.9037,0,-57.3844	1/1:108:0,108:0:0:108:3824:-344.358,-32.5112,0	0/1:208:110,97:110:3925:97:3444:-247.498,0,-290.769	1/1:249:1,248:1:36:248:8793:-787.765,-71.3582,0	0/1:39:19,20:19:664:20:715:-52.9372,0,-48.3443	0/1:219:83,136:83:2954:136:4838:-369.648,0,-200.168	0/1:99:30,68:30:1072:68:2415:-187.746,0,-66.9318	0/1:104:40,64:40:1404:64:2295:-175.503,0,-95.3473	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	.:.:.:.:.:.:.:.	0/1:7:2,5:2:72:5:165:-13.0664,0,-4.72951	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:172:86,86:86:3039:86:3057:-223.582,0,-221.962	0/1:154:95,59:95:3377:59:2083:-141.379,0,-257.787	0/1:43:16,27:16:576:27:968:-74.4931,0,-39.2307	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:118:0,118:0:0:118:4187:-377.01,-35.5215,0	0/1:39:15,24:15:523:24:864:-66.3424,0,-35.6583	0/1:158:84,74:84:2990:74:2615:-188.036,0,-221.769	0/1:65:44,21:44:1562:21:752:-48.4393,0,-121.303	0/1:58:27,31:27:924:31:1094:-81.3085,0,-66.0089	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	1/1:82:0,82:0:0:82:2924:-263.395,-24.6845,0	1/1:162:0,162:0:0:162:5745:-517.17,-48.7669,0	0/1:94:49,45:49:1733:45:1597:-115.722,0,-127.956	0/1:109:57,52:57:2011:52:1848:-133.788,0,-148.448	1/1:134:0,134:0:0:134:4789:-431.165,-40.338,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:115:0,115:0:0:115:4078:-367.206,-34.6185,0	1/1:108:0,108:0:0:108:3850:-346.696,-32.5112,0	0/1:7:1,6:1:32:6:216:-17.6833,0,-1.0921	0/1:180:107,73:107:3776:73:2563:-176.733,0,-285.853	0/1:38:25,13:25:892:13:457:-30.0235,0,-69.1605	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:78:44,34:44:1567:34:1200:-84.7663,0,-117.841	0/1:99:42,57:42:1499:57:2038:-153.89,0,-105.402	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:123:60,63:60:2152:63:2242:-165.016,0,-156.92	0/1:142:70,72:70:2494:72:2581:-189.792,0,-181.966	0/1:66:33,33:33:1184:33:1167:-85.4684,0,-87.0003	1/1:81:0,81:0:0:81:2874:-258.897,-24.3834,0	0/1:118:58,60:58:2067:60:2124:-155.904,0,-150.779	0/1:162:113,49:113:3975:49:1752:-109.197,0,-309.175	1/1:55:0,55:0:0:55:1951:-175.863,-16.5567,0	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	0/1:40:18,22:18:648:22:761:-56.7664,0,-46.6107	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:121:0,121:0:0:121:4288:-386.088,-36.4246,0	0/1:87:55,32:55:1942:32:1144:-77.0799,0,-148.865	1/1:131:0,131:0:0:131:4663:-419.833,-39.4349,0	1/1:152:0,152:0:0:152:5446:-490.268,-45.7566,0	0/1:109:62,47:62:2205:47:1661:-116.963,0,-165.901	0/1:65:32,33:32:1127:33:1180:-86.9411,0,-82.1705	.:.:.:.:.:.:.:.	1/1:74:1,73:1:36:73:2614:-231.909,-18.6779,0	0/1:122:68,54:68:2431:54:1913:-135.72,0,-182.319	1/1:225:3,222:3:108:222:7911:-701.94,-57.6566,0	0/1:74:35,39:35:1252:39:1373:-101.589,0,-90.7089	1/1:69:0,69:0:0:69:2439:-219.763,-20.7711,0	0/1:48:17,31:17:574:31:1101:-84.9466,0,-37.5265	1/1:123:1,122:1:36:122:4351:-388.166,-33.4284,0	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:59:29,30:29:1024:30:1071:-78.9408,0,-74.7109	1/1:91:0,91:0:0:91:3225:-290.473,-27.3937,0	1/1:41:0,41:0:0:41:1451:-130.885,-12.3422,0	0/1:121:63,58:63:2206:58:2047:-148.077,0,-162.374	0/1:76:43,33:43:1521:33:1163:-82.0978,0,-114.303	1/1:135:0,135:0:0:135:4769:-429.371,-40.6391,0	1/1:98:0,98:0:0:98:3511:-316.199,-29.5009,0
chr09	8731036	.	C	G	42558.7	PASS	AB=0.493429;ABP=4.95094;AC=57;AF=0.303191;AN=188;AO=2564;CIGAR=1X;DP=8297;DPB=8297;DPRA=1.36233;EPP=5570.67;EPPR=12434.7;GTI=0;LEN=1;MEANALT=1;MQM=59.9516;MQMR=59.9962;NS=94;NUMALT=1;ODDS=3.54567;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91347;QR=203906;RO=5729;RPL=0;RPP=5570.67;RPPR=12434.7;RPR=2564;RUN=1;SAF=0;SAP=5570.67;SAR=2564;SRF=0;SRP=12443.4;SRR=5729;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1277	0/0:108:108,0:108:3863:0:0:0,-32.5112,-347.865	0/0:103:103,0:103:3631:0:0:0,-31.0061,-326.997	0/0:154:154,0:154:5451:0:0:0,-46.3586,-490.72	0/1:57:25,32:25:900:32:1136:-85.3896,0,-64.1623	0/1:59:38,21:38:1355:21:756:-50.6065,0,-104.489	0/0:97:97,0:97:3429:0:0:0,-29.1999,-308.823	0/1:156:93,63:93:3284:63:2248:-155.623,0,-248.817	0/1:63:18,45:18:629:45:1576:-123.163,0,-37.9689	0/1:145:79,66:79:2813:66:2346:-167.749,0,-209.759	0/1:58:24,34:24:836:34:1212:-91.9266,0,-58.095	0/0:84:84,0:84:2951:0:0:0,-25.2865,-265.824	0/1:77:43,34:43:1536:34:1199:-85.0355,0,-115.354	0/1:94:49,45:49:1743:45:1612:-117.073,0,-128.857	0/1:61:33,28:33:1188:28:1004:-72.313,0,-88.8658	0/1:46:23,23:23:824:23:811:-59.4626,0,-60.6359	0/1:82:38,44:38:1337:44:1572:-117.087,0,-95.9435	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/1:36:18,18:18:640:18:639:-47.0012,0,-47.0922	0/1:94:50,44:50:1777:44:1576:-113.835,0,-131.914	0/1:119:49,70:49:1729:70:2486:-188.166,0,-120.07	0/1:34:16,18:16:572:18:644:-48.0556,0,-41.5784	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:104:50,54:50:1784:54:1908:-140.688,0,-129.536	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.489	0/1:294:154,140:154:5466:140:4970:-358.38,0,-403.564	0/0:163:162,1:162:5778:1:36:0,-45.4696,-516.535	0/1:44:21,23:21:752:23:824:-61.238,0,-54.7609	0/1:110:70,40:70:2497:40:1419:-94.8933,0,-191.868	0/1:134:92,42:92:3285:42:1499:-94.8658,0,-255.53	0/1:158:77,81:77:2755:81:2908:-214.392,0,-200.629	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/1:258:118,140:118:4181:140:4983:-370.952,0,-298.809	0/1:249:131,118:131:4684:118:4202:-303.331,0,-346.765	0/1:69:36,33:36:1275:33:1187:-86.3675,0,-94.2812	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:112:111,1:111:3950:1:36:0,-30.1171,-352.092	0/1:25:13,12:13:453:12:428:-31.3331,0,-33.5739	0/1:82:39,43:39:1404:43:1548:-114.929,0,-101.975	0/1:93:41,52:41:1456:52:1848:-138.603,0,-103.34	0/1:85:40,45:40:1396:45:1612:-119.783,0,-100.347	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.425	0/0:136:136,0:136:4854:0:0:0,-40.9401,-437.011	0/0:152:152,0:152:5422:0:0:0,-45.7566,-488.107	0/1:86:40,46:40:1417:46:1652:-123.052,0,-101.937	0/1:83:49,34:49:1756:34:1216:-84.7601,0,-133.339	0/0:147:144,0:144:5114:0:0:0,-43.3483,-460.044	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:111:111,0:111:3969:0:0:0,-33.4143,-357.399	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:78:43,35:43:1529:35:1243:-88.6935,0,-114.421	0/1:68:33,35:33:1184:35:1251:-92.4242,0,-86.3983	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/0:15:14,1:14:504:1:36:0,-0.917175,-42.0998	0/1:42:22,20:22:779:20:712:-51.7634,0,-57.7888	0/1:128:59,69:59:2108:69:2467:-183.752,0,-151.457	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/1:154:83,71:83:2934:71:2520:-180.692,0,-217.934	0/1:203:101,102:101:3597:102:3636:-266.335,0,-262.827	0/1:71:32,39:32:1139:39:1404:-105.286,0,-81.4453	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/1:125:70,55:70:2511:55:1967:-139.676,0,-188.612	0/1:45:13,32:13:464:32:1116:-87.1982,0,-28.5512	0/0:35:35,0:35:1235:0:0:0,-10.536,-111.453	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:131:61,70:61:2154:70:2487:-184.647,0,-154.689	0/1:23:14,9:14:504:9:320:-22.2187,0,-38.7744	0/0:92:91,1:91:3260:1:36:0,-24.0965,-290.022	0/1:89:57,32:57:2029:32:1140:-76.1175,0,-156.089	0/0:150:150,0:150:5338:0:0:0,-45.1545,-480.553	0/0:252:250,2:250:8917:2:72:0,-69.0228,-795.676	0/1:114:63,51:63:2245:51:1823:-130.033,0,-167.994	0/1:188:93,95:93:3316:95:3366:-246.561,0,-242.063	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:102:101,0:101:3602:0:0:0,-30.404,-324.024	0/1:53:25,28:25:891:28:1008:-75.0818,0,-64.5519	0/0:199:197,2:197:7025:2:72:0,-53.0682,-625.475	0/1:113:56,57:56:1991:57:2026:-148.596,0,-145.447	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:103:46,57:46:1635:57:2032:-152.146,0,-116.432	0/0:166:163,3:163:5763:3:108:0,-39.8958,-508.714	0/1:48:27,21:27:972:21:743:-52.7439,0,-73.3485	0/1:80:47,33:47:1669:33:1184:-82.7859,0,-126.413	0/0:80:80,0:80:2839:0:0:0,-24.0824,-255.747	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:84:42,42:42:1500:42:1486:-108.747,0,-110.008	0/1:112:39,73:39:1396:73:2599:-200.434,0,-92.2237	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:108:108,0:108:3824:0:0:0,-32.5112,-344.358
chr09	8731052	.	G	C	56960.3	PASS	AB=0.488178;ABP=9.2739;AC=57;AF=0.303191;AN=188;AO=2530;CIGAR=1X;DP=8296;DPB=8296;DPRA=1.34509;EPP=17.0725;EPPR=6.27034;GTI=0;LEN=1;MEANALT=1.03175;MQM=59.9534;MQMR=59.9946;NS=94;NUMALT=1;ODDS=4.3822;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90168;QR=205275;RO=5761;RPL=1329;RPP=17.0725;RPPR=6.27034;RPR=1201;RUN=1;SAF=0;SAP=5496.84;SAR=2530;SRF=0;SRP=12512.9;SRR=5761;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:14,18:14:500:18:635:-47.8434,0,-35.7032	0/0:110:110,0:110:3932:0:0:0,-33.1133,-354.073	0/0:103:103,0:103:3666:0:0:0,-31.0061,-330.144	0/0:152:152,0:152:5409:0:0:0,-45.7566,-486.942	0/1:58:26,32:26:923:32:1132:-84.7288,0,-65.927	0/1:59:38,21:38:1352:21:741:-49.2517,0,-104.22	0/0:93:93,0:93:3290:0:0:0,-27.9958,-296.321	0/1:152:91,61:91:3235:61:2168:-149.631,0,-245.616	0/1:63:20,43:20:704:43:1532:-119.208,0,-44.7196	0/1:145:79,66:79:2826:66:2362:-169.189,0,-210.928	0/1:58:25,33:25:892:33:1174:-88.5077,0,-63.1399	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.501	0/1:75:43,32:43:1539:32:1144:-80.6917,0,-116.225	0/1:93:49,44:49:1751:44:1576:-114.136,0,-129.878	0/1:61:33,28:33:1179:28:1000:-71.9525,0,-88.0544	0/1:47:24,23:24:864:23:820:-59.9741,0,-63.9342	0/1:80:36,44:36:1277:44:1563:-116.879,0,-91.1487	0/0:89:89,0:89:3191:0:0:0,-26.7917,-287.412	0/1:35:17,18:17:608:18:644:-47.7545,0,-44.516	0/1:95:49,46:49:1742:46:1652:-120.371,0,-128.465	0/1:119:49,70:49:1752:70:2471:-186.819,0,-122.142	0/1:31:15,16:15:536:16:572:-42.4815,0,-39.2429	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:104:51,53:51:1824:53:1870:-137.268,0,-133.134	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6378	0/1:295:155,140:155:5494:140:4987:-360.175,0,-405.786	0/0:165:164,1:164:5847:1:36:0,-46.0717,-522.746	0/1:42:21,21:21:743:21:756:-55.724,0,-54.5501	0/1:110:70,40:70:2499:40:1428:-95.7042,0,-192.049	0/1:136:95,41:95:3396:41:1464:-91.116,0,-264.915	0/1:158:76,82:76:2703:82:2936:-216.912,0,-195.952	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:256:116,140:116:4146:140:5015:-374.432,0,-296.259	0/1:247:131,116:131:4658:116:4138:-298.241,0,-345.03	0/1:66:34,32:34:1224:32:1148:-83.7619,0,-90.5991	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:113:112,1:112:3990:1:36:0,-30.4181,-355.692	0/1:25:14,11:14:500:11:396:-28.457,0,-37.8104	0/1:82:38,44:38:1368:44:1540:-114.205,0,-98.7364	0/1:92:41,51:41:1472:51:1825:-136.835,0,-105.081	0/1:91:42,49:42:1475:49:1701:-125.976,0,-105.65	0/0:70:69,0:69:2472:0:0:0,-20.7711,-222.522	0/0:138:138,0:138:4916:0:0:0,-41.5421,-442.591	0/0:151:151,0:151:5393:0:0:0,-45.4555,-485.499	0/1:86:40,46:40:1427:46:1610:-119.287,0,-102.838	0/1:82:50,32:50:1775:32:1129:-77.2319,0,-135.348	0/0:152:152,0:152:5414:0:0:0,-45.7566,-487.392	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:112:112,0:112:4002:0:0:0,-33.7154,-360.369	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:15:9,6:9:315:6:216:-15.2751,0,-24.1718	0/1:74:43,31:43:1540:31:1082:-75.411,0,-116.617	0/1:67:34,33:34:1185:33:1178:-86.159,0,-86.7835	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:15:14,1:14:504:1:36:0,-0.917175,-42.0998	0/1:43:23,20:23:828:20:707:-51.0103,0,-61.8998	0/1:128:61,67:61:2179:67:2408:-178.444,0,-157.844	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:153:81,72:81:2904:72:2559:-184.447,0,-215.538	0/1:201:101,99:101:3599:99:3521:-256.534,0,-263.551	0/1:70:32,38:32:1144:38:1364:-101.989,0,-82.1974	0/0:68:68,0:68:2410:0:0:0,-20.47,-217.156	0/1:128:72,56:72:2548:56:2016:-143.095,0,-191.038	0/1:47:14,33:14:487:33:1171:-91.5483,0,-30.0108	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.113	0/1:129:60,69:60:2130:69:2472:-183.901,0,-153.134	0/1:22:14,8:14:496:8:288:-19.6447,0,-38.3516	0/0:93:92,0:92:3274:0:0:0,-27.6948,-294.52	0/1:91:59,32:59:2071:32:1152:-76.5964,0,-159.264	0/0:149:149,0:149:5319:0:0:0,-44.8535,-478.845	0/0:254:252,2:252:8983:2:72:0,-69.6249,-801.616	0/1:114:64,50:64:2280:50:1777:-125.894,0,-171.145	0/1:184:94,89:94:3354:89:3183:-231.237,0,-246.628	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/1:54:26,28:26:912:28:992:-73.3388,0,-66.1226	0/0:199:197,2:197:7051:2:68:0,-53.4473,-628.193	0/1:111:58,53:58:2037:53:1904:-138.223,0,-150.184	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:105:48,57:48:1712:57:2035:-151.813,0,-122.758	0/0:168:164,4:164:5843:4:144:0,-37.2594,-512.669	0/1:48:27,21:27:959:21:752:-53.5568,0,-72.176	0/1:82:49,33:49:1740:33:1180:-81.8236,0,-132.197	0/0:82:81,0:81:2882:0:0:0,-24.3834,-259.257	0/0:33:33,0:33:1162:0:0:0,-9.93399,-104.885	0/1:84:42,42:42:1500:42:1498:-109.828,0,-110.008	0/1:113:39,74:39:1366:74:2652:-204.89,0,-89.218	0/0:44:44,0:44:1547:0:0:0,-13.2453,-139.518	0/0:105:105,0:105:3759:0:0:0,-31.6081,-338.509
chr09	8734132	.	A	T	131578	PASS	AB=0.469058;ABP=50.3124;AC=126;AF=0.670213;AN=188;AO=6470;CIGAR=1X;DP=9507;DPB=9507;DPRA=51.6467;EPP=14043.8;EPPR=6573.9;GTI=3;LEN=1;MEANALT=1.02174;MQM=59.5145;MQMR=59.9367;NS=94;NUMALT=1;ODDS=0.669112;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=231401;QR=108370;RO=3034;RPL=6470;RPP=14052.4;RPPR=6573.9;RPR=0;RUN=1;SAF=6469;SAP=14043.8;SAR=1;SRF=3034;SRP=6591.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:23,22:23:813:22:784:-57.3261,0,-59.9428	1/1:86:0,86:0:0:86:3039:-273.633,-25.8886,0	1/1:201:0,201:0:0:201:7157:-643.696,-60.507,0	1/1:217:1,216:1:36:216:7738:-692.343,-61.7252,0	0/1:60:21,39:21:756:39:1385:-106.874,0,-50.3054	0/1:28:21,7:21:756:7:252:-14.6001,0,-59.9338	1/1:60:0,60:0:0:60:2137:-192.584,-18.0618,0	0/1:147:88,59:88:3089:59:2112:-146.07,0,-233.044	0/1:127:81,46:81:2903:46:1656:-111.089,0,-223.274	0/1:73:33,40:33:1188:40:1406:-104.849,0,-85.2534	0/1:74:53,21:53:1908:21:743:-44.9146,0,-149.721	1/1:140:0,140:0:0:140:5018:-451.698,-42.1442,0	0/1:106:57,49:57:2040:49:1760:-126.75,0,-151.963	0/1:83:32,51:32:1137:51:1810:-138.19,0,-77.6515	0/1:72:35,37:35:1256:37:1319:-97.3272,0,-91.6711	0/1:89:45,44:45:1620:44:1576:-115.318,0,-119.298	0/1:29:15,14:15:540:14:500:-36.5981,0,-40.2067	1/1:39:0,39:0:0:39:1396:-125.931,-11.7402,0	0/1:35:13,22:13:468:22:792:-60.2898,0,-31.9236	0/1:133:68,65:68:2444:65:2340:-170.797,0,-180.171	0/1:177:72,105:72:2565:105:3755:-284.845,0,-177.687	0/1:160:94,66:94:3357:66:2361:-164.577,0,-254.051	1/1:124:3,121:3:108:121:4344:-380.952,-27.2526,0	0/1:52:34,18:34:1209:18:644:-42.637,0,-93.4606	1/1:46:0,46:0:0:46:1644:-148.23,-13.8474,0	0/1:208:103,105:103:3670:105:3759:-275.879,0,-267.882	1/1:252:0,252:0:0:252:9044:-813.872,-75.8596,0	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	0/1:343:177,166:177:6272:166:5944:-431.774,0,-461.321	0/1:126:61,65:61:2177:65:2323:-171.211,0,-158.265	0/1:101:55,46:55:1976:46:1652:-118.507,0,-147.711	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:276:138,138:138:4952:138:4952:-362.71,0,-362.744	0/1:105:46,59:46:1648:59:2105:-158.085,0,-117	0/1:65:36,29:36:1288:29:1029:-73.3133,0,-96.6566	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:89:0,89:0:0:89:3185:-286.867,-26.7917,0	0/1:39:17,22:17:612:22:788:-59.5046,0,-43.6733	0/1:279:135,144:135:4809:144:5153:-379.797,0,-348.979	0/1:95:61,33:61:2192:33:1172:-77.1208,0,-168.887	0/1:79:40,39:40:1432:39:1365:-99.3596,0,-105.396	1/1:80:0,80:0:0:80:2865:-258.062,-24.0824,0	1/1:170:1,167:1:36:167:5928:-529.861,-47.3346,0	1/1:205:3,202:3:108:202:7187:-636.525,-51.636,0	0/1:94:68,26:68:2402:26:932:-55.902,0,-188.137	0/1:150:87,63:87:3100:63:2251:-157.524,0,-234.071	1/1:85:0,85:0:0:85:3038:-273.623,-25.5876,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:147:0,147:0:0:147:5258:-473.283,-44.2514,0	1/1:41:0,41:0:0:41:1457:-131.257,-12.3422,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:158:75,83:75:2680:83:2984:-221.196,0,-193.878	0/1:53:33,20:33:1188:20:720:-49.168,0,-91.274	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:4,1:4:129:1:36:-2.09312,0,-10.4225	0/1:89:53,36:53:1900:36:1296:-90.0163,0,-144.482	0/1:132:64,68:64:2304:68:2435:-179.642,0,-167.885	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:197:117,80:117:4169:80:2863:-198.585,0,-316.09	0/1:126:73,53:73:2613:53:1889:-132.357,0,-197.486	0/1:50:21,29:21:752:29:1044:-79.2125,0,-52.9548	1/1:117:0,117:0:0:117:4191:-376.71,-35.2205,0	0/1:183:99,84:99:3544:84:3016:-216.559,0,-264.074	0/1:194:137,57:137:4877:57:2025:-124.115,0,-380.653	1/1:47:0,47:0:0:47:1688:-152.196,-14.1484,0	1/1:43:0,43:0:0:43:1544:-139.251,-12.9443,0	0/1:63:34,29:34:1224:29:1044:-75.3007,0,-91.0674	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	1/1:131:0,131:0:0:131:4704:-423.453,-39.4349,0	0/1:91:41,50:41:1457:50:1788:-133.783,0,-104.013	1/1:229:0,229:0:0:229:8178:-736.001,-68.9359,0	1/1:199:0,199:0:0:199:7155:-643.946,-59.905,0	0/1:120:55,65:55:1964:65:2336:-174.18,0,-140.912	0/1:117:53,64:53:1862:64:2304:-172.221,0,-132.635	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:144:1,143:1:36:143:5109:-456.3,-39.75,0	0/1:122:56,66:56:2012:66:2353:-175.275,0,-144.627	1/1:131:1,130:1:32:130:4661:-416.029,-36.2356,0	0/1:67:40,27:40:1440:27:968:-67.2684,0,-109.729	1/1:105:0,105:0:0:105:3751:-337.771,-31.6082,0	0/1:59:29,30:29:1040:30:1080:-79.7356,0,-76.1536	1/1:151:1,150:1:36:150:5357:-478.432,-41.8573,0	0/1:33:21,12:21:756:12:428:-28.9084,0,-58.4332	0/1:84:37,47:37:1332:47:1688:-126.812,0,-94.8877	1/1:105:0,105:0:0:105:3754:-338.059,-31.6082,0	1/1:52:0,52:0:0:52:1864:-168.035,-15.6536,0	0/1:134:63,71:63:2260:71:2544:-188.717,0,-163.325	0/1:103:72,31:72:2568:31:1116:-69.7394,0,-200.364	1/1:251:0,251:0:0:251:8961:-806.232,-75.5585,0	1/1:107:0,107:0:0:107:3835:-345.304,-32.2102,0
chr09	9132500	.	A	G	170991	PASS	AB=0.472816;ABP=51.6504;AC=130;AF=0.691489;AN=188;AO=8446;CIGAR=1X;DP=12453;DPB=12453;DPRA=0;EPP=18343.3;EPPR=8699.76;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.4168;MQMR=59.9583;NS=94;NUMALT=1;ODDS=0.29554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=301220;QR=143255;RO=4005;RPL=0;RPP=18343.3;RPPR=8699.76;RPR=8446;RUN=1;SAF=8446;SAP=18343.3;SAR=0;SRF=4005;SRP=8699.76;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:42,30:42:1512:30:1080:-75.8253,0,-114.7	1/1:263:0,263:0:0:263:9330:-838.816,-79.1709,0	1/1:208:0,208:0:0:208:7403:-666.057,-62.6142,0	1/1:265:0,265:0:0:265:9481:-853.078,-79.773,0	0/1:144:80,64:80:2853:64:2292:-163.079,0,-213.63	0/1:88:50,38:50:1800:38:1356:-95.8353,0,-135.792	1/1:120:0,120:0:0:120:4263:-383.74,-36.1236,0	0/1:265:114,151:114:4058:151:5363:-402.976,0,-285.633	0/1:124:54,70:54:1936:70:2467:-184.949,0,-137.189	0/1:97:55,42:55:1976:42:1504:-105.743,0,-148.915	0/1:43:19,24:19:684:24:856:-64.3815,0,-48.946	1/1:76:0,76:0:0:76:2717:-244.711,-22.8783,0	0/1:77:37,40:37:1332:40:1436:-106.344,0,-97.0031	0/1:50:33,17:33:1176:17:608:-39.8187,0,-91.0963	0/1:60:41,19:41:1476:19:680:-43.4482,0,-115.074	0/1:68:36,32:36:1292:32:1144:-82.7819,0,-96.1137	0/1:54:32,22:32:1132:22:777:-53.9512,0,-85.933	1/1:56:0,56:0:0:56:2008:-180.965,-16.8577,0	0/1:46:22,24:22:777:24:864:-64.2344,0,-56.403	0/1:418:238,180:238:8488:180:6460:-455.599,0,-638.087	0/1:266:141,125:141:5026:125:4462:-321.583,0,-372.411	0/1:133:97,36:97:3484:36:1288:-76.1866,0,-273.733	1/1:95:0,95:0:0:95:3367:-302.668,-28.5979,0	0/1:169:92,77:92:3300:77:2757:-197.466,0,-246.344	1/1:124:0,124:0:0:124:4429:-398.775,-37.3277,0	0/1:423:224,199:224:8052:199:7094:-510.905,0,-597.358	1/1:270:1,269:1:36:269:9600:-860.112,-77.6798,0	0/1:49:22,27:22:784:27:972:-73.0474,0,-56.1334	0/1:489:254,235:254:9120:235:8417:-610.117,0,-673.566	0/1:89:41,48:41:1472:48:1709:-127.287,0,-105.984	0/1:119:60,59:60:2129:59:2109:-154.23,0,-156.054	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:14:8,6:8:284:6:197:-13.8369,0,-21.6889	1/1:6:0,6:0:0:6:216:-19.6304,-1.80618,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:211:118,93:118:4202:93:3325:-235.857,0,-314.842	0/1:217:112,105:112:4016:105:3749:-272.249,0,-295.258	0/1:76:33,43:33:1184:43:1521:-114.289,0,-83.99	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:259:1,258:1:36:258:9190:-823.044,-74.3685,0	0/1:42:25,17:25:892:17:612:-42.7702,0,-67.9564	0/1:229:115,114:115:4075:114:4030:-293.858,0,-297.999	0/1:81:37,44:37:1316:44:1554:-115.747,0,-94.3584	0/1:83:42,41:42:1512:41:1476:-108.098,0,-111.389	1/1:172:0,171:0:0:171:6109:-548.868,-51.4761,0	1/1:110:0,110:0:0:110:3918:-352.621,-33.1133,0	1/1:223:2,221:2:72:221:7878:-702.088,-60.293,0	0/1:152:80,72:80:2876:72:2572:-185.935,0,-213.319	0/1:221:114,107:114:4054:107:3814:-276.752,0,-298.519	1/1:232:0,232:0:0:232:8304:-747.028,-69.839,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:218:0,218:0:0:218:7767:-698.822,-65.6245,0	1/1:23:0,23:0:0:23:805:-72.7675,-6.92369,0	0/1:19:10,9:10:360:9:324:-23.78,0,-27.0247	0/1:263:121,142:121:4344:142:5039:-374.404,0,-311.962	0/1:72:30,42:30:1076:42:1508:-114.035,0,-75.4787	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:29:12,17:12:428:17:608:-46.3084,0,-30.1289	0/1:66:28,38:28:1004:38:1360:-102.666,0,-70.8079	0/1:102:49,53:49:1760:53:1904:-140.877,0,-127.979	1/1:14:0,14:0:0:14:485:-43.9334,-4.21442,0	0/1:271:137,134:137:4892:134:4820:-352.268,0,-358.854	0/1:244:111,133:111:3992:133:4738:-352.938,0,-286.017	0/1:97:43,54:43:1540:54:1896:-141.62,0,-109.693	1/1:160:0,160:0:0:160:5721:-514.934,-48.1648,0	0/1:341:207,134:207:7330:134:4770:-326.711,0,-556.827	0/1:158:106,52:106:3793:52:1860:-120.114,0,-293.734	1/1:18:0,18:0:0:18:644:-58.1841,-5.41854,0	1/1:119:0,119:0:0:119:4236:-381.328,-35.8226,0	0/1:82:40,42:40:1424:42:1478:-108.534,0,-103.762	0/1:25:7,18:7:252:18:633:-49.7693,0,-15.5032	1/1:90:1,88:1:36:88:3164:-281.279,-23.5532,0	0/1:86:45,41:45:1600:41:1449:-104.801,0,-118.357	1/1:149:0,149:0:0:149:5264:-473.792,-44.8535,0	1/1:279:0,279:0:0:279:9939:-893.944,-83.9874,0	0/1:156:76,80:76:2724:80:2872:-211.742,0,-198.44	0/1:199:104,95:104:3732:95:3393:-245.639,0,-276.175	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:221:0,221:0:0:221:7896:-710.393,-66.5276,0	0/1:185:96,89:96:3452:89:3166:-229.379,0,-255.201	1/1:394:1,393:1:36:393:13967:-1252.29,-115.008,0	0/1:96:53,43:53:1904:43:1540:-109.904,0,-142.739	1/1:57:0,57:0:0:57:2040:-183.786,-17.1587,0	0/1:119:66,53:66:2372:53:1900:-135.256,0,-177.915	1/1:253:4,249:4:144:249:8905:-787.604,-62.847,0	0/1:61:33,28:33:1184:28:1000:-71.9384,0,-88.5055	0/1:80:37,43:37:1332:43:1548:-115.53,0,-96.1	1/1:77:0,77:0:0:77:2768:-249.289,-23.1793,0	1/1:18:0,18:0:0:18:644:-58.286,-5.41854,0	0/1:62:46,16:46:1637:16:576:-33.5029,0,-128.953	0/1:84:64,20:64:2277:20:720:-39.8423,0,-179.904	1/1:173:0,173:0:0:173:6170:-555.301,-52.0782,0	1/1:112:0,112:0:0:112:3981:-358.375,-33.7154,0
chr09	9132559	.	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chr09	9217536	.	A	T	37066.8	PASS	AB=0.527282;ABP=29.0766;AC=58;AF=0.311828;AN=186;AO=2145;CIGAR=1X;DP=6515;DPB=6515;DPRA=1.25819;EPP=4660.82;EPPR=9492.34;GTI=0;LEN=1;MEANALT=1;MQM=59.241;MQMR=59.4302;NS=93;NUMALT=1;ODDS=1.30903;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76671;QR=156178;RO=4370;RPL=15;RPP=4531.44;RPPR=9302.22;RPR=2130;RUN=1;SAF=2130;SAP=4531.44;SAR=15;SRF=4348;SRP=9302.22;SRR=22;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:24,8:24:860:8:288:-16.4465,0,-68.0807	0/0:160:159,1:159:5643:1:36:0,-44.598,-504.213	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.398	0/0:113:112,1:112:4016:1:36:0,-30.4181,-357.865	0/1:51:33,18:33:1176:18:644:-42.7464,0,-90.7814	0/1:38:14,24:14:504:24:852:-65.5612,0,-34.2522	0/0:105:105,0:105:3748:0:0:0,-31.6081,-337.179	0/1:108:67,41:67:2404:41:1468:-99.8177,0,-182.991	0/1:87:44,43:44:1580:43:1536:-112.339,0,-116.268	0/1:56:28,28:28:1008:28:1004:-73.8166,0,-73.9715	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/0:15:14,1:14:496:1:36:0,-0.917175,-41.376	0/1:40:11,29:11:392:29:1036:-81.5127,0,-23.5706	0/1:33:8,25:8:288:25:892:-70.6196,0,-16.1976	0/1:29:13,16:13:468:16:572:-43.0597,0,-33.7298	0/1:27:10,17:10:360:17:612:-47.2288,0,-24.5415	0/1:38:8,30:8:288:30:1080:-85.9384,0,-14.82	0/0:18:17,1:17:612:1:36:0,-1.82026,-51.7005	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/1:371:199,172:199:7052:172:6152:-441.944,0,-522.926	0/1:120:53,67:53:1892:67:2388:-178.963,0,-134.287	0/1:61:21,40:21:752:40:1428:-110.452,0,-49.6328	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.124	0/1:111:60,51:60:2152:51:1820:-130.61,0,-160.511	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.211	0/1:221:101,120:101:3605:120:4281:-317.851,0,-257.17	0/0:126:124,2:124:4421:2:64:0,-31.8511,-391.899	0/1:23:4,19:4:144:19:676:-54.2035,0,-6.38993	0/1:201:123,78:123:4381:78:2789:-190.51,0,-332.749	0/1:96:44,52:44:1576:52:1868:-139.339,0,-113.201	0/1:102:56,46:56:1982:46:1644:-116.52,0,-147.773	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3089	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:97:38,59:38:1352:59:2097:-159.622,0,-92.5429	0/1:161:90,71:90:3217:71:2532:-179.001,0,-241.105	0/1:22:7,15:7:248:15:540:-42.3096,0,-16.0406	.:.:.:.:.:.:.:.	0/0:154:154,0:154:5513:0:0:0,-46.3586,-496.181	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:124:54,70:54:1932:70:2512:-188.983,0,-136.796	0/1:29:9,20:9:324:20:716:-56.0274,0,-20.7697	0/1:21:9,12:9:320:12:428:-32.4494,0,-22.8145	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.481	0/0:125:125,0:125:4476:0:0:0,-37.6287,-402.695	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.516	0/1:72:36,36:36:1288:36:1284:-94.1701,0,-94.5309	0/1:124:61,63:61:2169:63:2252:-165.599,0,-158.141	0/0:155:154,1:154:5528:1:36:0,-43.0614,-493.938	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:109:109,0:109:3897:0:0:0,-32.8123,-350.914	0/0:26:24,2:24:860:2:72:0,-0.990057,-70.7181	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7719	0/1:112:54,58:54:1936:58:2076:-152.922,0,-140.657	0/1:54:37,17:37:1324:17:608:-38.7815,0,-103.194	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:50:29,21:29:1032:21:748:-52.3124,0,-77.2618	0/1:48:14,34:14:504:34:1208:-94.2944,0,-31.2487	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:167:70,97:70:2504:97:3468:-262.042,0,-174.459	0/1:178:75,103:75:2665:103:3684:-278.158,0,-185.795	0/1:52:30,22:30:1061:22:792:-55.9517,0,-80.1458	0/0:74:74,0:74:2633:0:0:0,-22.2762,-236.837	0/1:130:68,62:68:2414:62:2220:-160.909,0,-178.216	0/1:87:27,60:27:972:60:2136:-166.12,0,-61.6021	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.122	0/1:44:15,29:15:532:29:1040:-80.6503,0,-34.9678	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.711	0/1:57:28,29:28:1008:29:1040:-76.6463,0,-73.8557	0/0:137:137,0:137:4885:0:0:0,-41.2411,-439.689	0/0:149:148,1:148:5296:1:36:0,-41.2552,-473.036	0/1:85:35,50:35:1252:50:1792:-135.623,0,-87.3975	0/1:73:34,39:34:1220:39:1392:-102.94,0,-88.114	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5035	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.51	0/1:69:41,28:41:1457:28:996:-69.0932,0,-110.63	0/0:190:183,7:183:6564:7:252:0,-34.1667,-566.821	0/1:40:13,27:13:468:27:972:-75.7567,0,-30.4184	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4072	0/1:42:14,28:14:504:28:1000:-77.4818,0,-32.974	0/0:33:32,1:32:1152:1:36:0,-6.33571,-100.387	0/1:22:5,17:5:180:17:608:-48.2711,0,-9.92108	0/1:33:11,22:11:388:22:788:-61.1868,0,-25.2772	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0315	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:30:9,21:9:324:21:748:-58.6037,0,-20.475	0/1:55:15,40:15:532:40:1424:-111.895,0,-31.6564	0/0:87:86,1:86:3084:1:36:0,-22.5913,-273.958	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99
chr09	9217614	.	CGATG	TGATC,TGATG	68573.1	PASS	AB=0.359931,0.633565;ABP=395.981,360.33;AC=123,63;AF=0.66129,0.33871;AN=186;AO=1919,1488;CIGAR=1X3M1X,1X4M;DP=3425;DPB=3428.2;DPRA=6.82118,1.18387;EPP=4170.07,3234.16;EPPR=11.6962;GTI=9;LEN=5,1;MEANALT=1.79121,2.12903;MQM=59.5873,59.5665;MQMR=60;NS=93;NUMALT=2;ODDS=0.131485;PAIRED=0,0;PAIREDR=0;PAO=16,0;PQA=561,0;PQR=0;PRO=0;QA=66652,52562;QR=144;RO=4;RPL=0,0;RPP=4170.07,3234.16;RPPR=11.6962;RPR=1919,1488;RUN=1,1;SAF=0,0;SAP=4170.07,3234.16;SAR=1919,1488;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:20:0,2,18:0:0:2,18:72,623:-56.8484,-50.9722,-50.3702,-6.23466,0,-0.816122	1/1:38:0,38,0:0:0:38,0:1323,0:-118.977,-11.4391,0,-118.977,-11.4391,-118.977	1/1:46:0,46,0:0:0:46,0:1578,0:-142.302,-13.8474,0,-142.302,-13.8474,-142.302	1/1:59:0,59,0:0:0:59,0:2056,0:-185.102,-17.7608,0,-185.102,-17.7608,-185.102	1/2:29:0,18,11:0:0:18,11:630,384:-82.4826,-31.2244,-25.8059,-51.2487,0,-47.9374	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/1:35:0,35,0:0:0:35,0:1208,0:-108.601,-10.5361,0,-108.601,-10.5361,-108.601	1/2:50:0,14,36:0:0:14,36:475,1262:-141.553,-103.037,-98.8222,-38.8591,0,-28.0221	1/2:19:0,10,9:0:0:10,9:356,320:-55.4486,-26.4331,-23.4228,-29.3712,0,-26.6619	1/2:43:0,23,20:0:0:23,20:821,707:-124.853,-57.9322,-51.0085,-67.2758,0,-61.2552	1/2:24:0,3,21:0:0:3,21:105,735:-68.6929,-60.1498,-59.2467,-8.893,0,-2.57137	1/1:10:0,10,0:0:0:10,0:343,0:-31.195,-3.0103,0,-31.195,-3.0103,-31.195	1/2:30:0,4,25:0:0:4,25:138,876:-82.6062,-71.3963,-70.1922,-11.3019,0,-3.77612	1/2:37:0,11,26:0:0:11,26:387,910:-105.886,-74.3815,-71.0701,-31.8556,0,-24.0288	1/2:17:0,3,14:0:0:3,14:102,504:-49.7538,-41.4837,-40.5806,-8.61351,0,-4.39909	1/2:26:0,9,16:0:0:9,16:306,572:-71.5896,-46.7715,-44.0623,-24.9332,0,-20.1167	1/2:16:0,5,11:0:0:5,11:167,380:-44.737,-31.2206,-29.7155,-13.8538,0,-10.5425	1/1:11:0,11,0:0:0:11,0:385,0:-34.986,-3.31133,0,-34.986,-3.31133,-34.986	1/2:10:0,4,6:0:0:4,6:139,216:-29.2794,-17.9834,-16.7793,-11.6483,0,-9.8421	1/2:97:0,43,53:0:0:43,53:1490,1875:-273.752,-152.758,-139.814,-121.033,0,-105.079	1/2:67:0,22,45:0:0:22,45:767,1578:-190.777,-128.399,-121.776,-62.3684,0,-48.822	1/2:67:0,12,55:0:0:12,55:426,1947:-192.878,-158.944,-155.332,-34.2824,0,-17.7257	1/1:10:0,10,0:0:0:10,0:348,0:-31.6556,-3.0103,0,-31.6556,-3.0103,-31.6556	1/2:25:0,11,14:0:0:11,14:387,496:-71.9396,-40.7552,-37.4439,-31.5353,0,-27.3209	1/1:20:0,20,0:0:0:20,0:700,0:-63.3241,-6.0206,0,-63.3241,-6.0206,-63.3241	1/2:105:0,46,59:0:0:46,59:1576,2100:-299.363,-171.439,-157.592,-128.272,0,-110.511	1/1:77:0,75,0:0:0:75,0:2593,0:-233.227,-22.5773,0,-233.227,-22.5773,-233.227	1/2:3:0,1,2:0:0:1,2:35,72:-9.06454,-6.23466,-5.93363,-3.18202,0,-2.57996	1/2:213:0,92,120:0:0:92,120:3193,4263:-606.782,-347.23,-319.536,-259.543,0,-223.419	1/2:39:0,13,26:0:0:13,26:439,928:-111.576,-76.0036,-72.0902,-35.9167,0,-28.0899	1/2:43:0,21,22:0:0:21,22:727,763:-121.44,-62.3655,-56.0439,-59.4204,0,-52.7977	.:.:.:.:.:.:.:.	1/2:11:0,2,9:0:0:2,9:70,308:-31.0375,-25.3407,-24.7386,-6.04527,0,-3.336	1/1:2:0,2,0:0:0:2,0:71,0:-6.74206,-0.60206,0,-6.74206,-0.60206,-6.74206	2/2:8:0,0,8:0:0:0,8:0,288:-26.2566,-26.2566,-26.2566,-2.40824,-2.40824,0	2/2:15:0,1,14:0:0:1,14:30,496:-44.66,-42.265,-41.964,-4.21442,-1.51588,0	1/2:85:0,16,68:0:0:16,68:550,2403:-240.398,-195.735,-190.919,-44.7094,0,-24.2393	1/2:31:0,20,11:0:0:20,11:690,396:-88.7117,-32.6705,-26.6499,-56.3957,0,-53.0844	1/2:18:0,5,13:0:0:5,13:178,456:-51.968,-37.4589,-35.9538,-14.8635,0,-10.9501	1/2:6:0,2,4:0:0:2,4:72,144:-17.9834,-12.1086,-11.5065,-6.23466,0,-5.03054	1/1:35:0,35,0:0:0:35,0:1207,0:-108.47,-10.5361,0,-108.47,-10.5361,-108.47	1/2:14:0,4,10:0:0:4,10:138,352:-40.2165,-29.0073,-27.8031,-11.556,0,-8.54575	1/2:61:1,12,48:1:36:12,48:417,1683:-167.594,-133.993,-133.318,-30.9528,0,-19.4417	1/2:30:0,13,17:0:0:13,17:452,600:-85.94,-49.2093,-45.2959,-37.0804,0,-31.9629	1/2:24:0,6,17:0:0:6,17:202,600:-65.2702,-48.9061,-47.0999,-16.3988,0,-11.2813	1/1:19:0,19,0:0:0:19,0:666,0:-59.8969,-5.71957,0,-59.8969,-5.71957,-59.8969	1/1:56:0,56,0:0:0:56,0:1925,0:-173.514,-16.8577,0,-173.514,-16.8577,-173.514	1/1:80:0,80,0:0:0:80,0:2782,0:-250.248,-24.0824,0,-250.248,-24.0824,-250.248	1/2:49:0,24,23:0:0:24,23:824,820:-133.739,-66.8379,-59.6131,-66.8927,0,-59.969	1/2:76:0,33,43:0:0:33,43:1139,1535:-217.999,-125.486,-115.552,-92.8633,0,-79.919	1/1:50:0,50,0:0:0:50,0:1772,0:-159.405,-15.0515,0,-159.405,-15.0515,-159.405	1/2:7:0,5,2:0:0:5,2:178,72:-20.7386,-6.23371,-4.72856,-14.8635,0,-14.2614	1/1:42:0,41,1:0:0:41,1:1456,36:-130.977,-12.3422,0,-128.04,-9.40481,-127.739	1/1:8:0,8,0:0:0:8,0:274,0:-24.9937,-2.40824,0,-24.9937,-2.40824,-24.9937	1/2:6:0,1,5:0:0:1,5:35,180:-17.8921,-15.046,-14.745,-3.1976,0,-1.69245	1/2:105:0,24,81:0:0:24,81:844,2819:-298.209,-229.522,-222.297,-69.0379,0,-44.6545	1/2:23:0,9,14:0:0:9,14:307,504:-66.3867,-41.4837,-38.7744,-25.2513,0,-21.0369	1/2:7:0,1,6:0:0:1,6:36,216:-20.9039,-17.9843,-17.6833,-3.27774,0,-1.47156	2/2:3:0,0,3:0:0:0,3:0,108:-1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chr09	9341407	.	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chr09	9551367	.	T	C	31751.9	PASS	AB=0.483742;ABP=12.1894;AC=59;AF=0.31383;AN=188;AO=1936;CIGAR=1X;DP=6627;DPB=6627;DPRA=0.937407;EPP=4206.98;EPPR=10180.7;GTI=2;LEN=1;MEANALT=1.04918;MQM=59.7035;MQMR=59.1208;NS=94;NUMALT=1;ODDS=0.793458;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68902;QR=167377;RO=4687;RPL=0;RPP=4206.98;RPPR=10180.7;RPR=1936;RUN=1;SAF=0;SAP=4206.98;SAR=1936;SRF=0;SRP=10180.7;SRR=4687;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:31,33:31:1108:33:1180:-87.2421,0,-80.7122	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.178	0/0:63:62,1:62:2224:1:36:0,-15.3666,-195.912	0/0:139:139,0:139:4981:0:0:0,-41.8432,-447.955	0/1:50:20,30:20:716:30:1080:-82.4609,0,-49.6949	0/1:62:31,31:31:1112:31:1104:-81.0068,0,-81.1056	0/0:141:140,1:140:4980:1:36:0,-38.847,-444.7	0/1:120:64,56:64:2296:56:2000:-144.15,0,-170.682	0/1:71:42,29:42:1504:29:1044:-72.9017,0,-113.734	0/1:77:29,48:29:1040:48:1689:-128.485,0,-70.7351	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.485	0/1:35:19,16:19:684:16:576:-41.6389,0,-51.0112	0/1:33:18,15:18:644:15:536:-38.6408,0,-48.331	0/1:24:11,13:11:396:13:468:-35.234,0,-28.758	0/1:21:9,12:9:324:12:428:-32.5368,0,-23.1735	0/1:29:15,14:15:540:14:504:-36.9682,0,-39.9177	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2095	0/1:23:15,8:15:540:8:284:-18.979,0,-41.4353	0/1:156:84,72:84:2997:72:2584:-185.788,0,-222.789	0/1:85:38,47:38:1359:47:1662:-124.239,0,-96.362	0/1:110:34,76:34:1220:76:2685:-208.77,0,-76.9768	0/0:137:137,0:137:4884:0:0:0,-41.2411,-438.692	0/1:114:59,54:59:2104:54:1924:-139.063,0,-155.189	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.275	0/1:291:149,142:149:5320:142:5021:-364.392,0,-390.829	0/0:194:194,0:194:6874:0:0:0,-58.3998,-618.659	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.508	0/1:233:121,112:121:4317:112:3970:-287.342,0,-318.209	0/1:119:63,56:63:2248:56:2003:-144.678,0,-166.259	0/1:116:62,54:62:2209:54:1913:-137.455,0,-164.101	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:12:7,5:7:252:5:180:-12.9393,0,-19.4058	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:109:65,44:65:2324:44:1580:-109.677,0,-176.595	0/1:216:111,105:111:3976:105:3768:-274.255,0,-292.705	0/1:20:10,10:10:360:10:356:-26.3606,0,-26.7221	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:100:100,0:100:3577:0:0:0,-30.103,-322.044	0/1:10:7,3:7:252:3:108:-7.06445,0,-20.0187	0/1:132:71,61:71:2533:61:2176:-156.369,0,-188.458	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.1864	0/1:32:17,15:17:612:15:523:-37.7628,0,-45.7422	0/0:93:93,0:93:3344:0:0:0,-27.9958,-298.828	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.468	0/0:90:90,0:90:3232:0:0:0,-27.0927,-290.341	0/1:81:35,46:35:1256:46:1632:-122.78,0,-88.9557	0/1:102:70,32:70:2500:32:1139:-72.1133,0,-194.347	0/0:154:154,0:154:5435:0:0:0,-46.3586,-489.1	0/1:6:3,3:3:108:3:108:-8.26805,0,-8.2562	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.716	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.045	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:90:50,40:50:1796:40:1420:-101.004,0,-134.797	0/1:46:24,22:24:864:22:784:-57.0109,0,-64.2228	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6173	0/1:14:6,8:6:216:8:284:-21.6852,0,-15.5761	0/1:57:29,28:29:1019:28:995:-72.7041,0,-74.6389	0/1:67:32,35:32:1148:35:1237:-91.3795,0,-83.444	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:123:70,53:70:2500:53:1887:-133.071,0,-188.206	0/1:151:76,74:76:2697:74:2612:-189.807,0,-196.276	0/1:66:36,30:36:1288:30:1068:-75.3721,0,-96.3556	0/0:64:63,0:63:2260:0:0:0,-18.9649,-201.966	0/1:147:85,62:85:3040:62:2196:-153.607,0,-229.548	0/1:64:32,32:32:1125:32:1129:-82.6477,0,-82.2876	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0642	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.416	0/1:59:26,33:26:924:33:1176:-88.3833,0,-65.7102	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/0:124:124,0:124:4428:0:0:0,-37.3277,-398.253	0/1:29:6,23:6:216:23:820:-65.3926,0,-11.0606	0/0:144:144,0:144:5097:0:0:0,-43.3483,-458.745	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.536	0/1:81:51,30:51:1824:30:1072:-72.3732,0,-139.96	0/1:60:30,30:30:1080:30:1064:-78.0099,0,-79.4338	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:56:56,0:56:1973:0:0:0,-16.8577,-177.807	0/1:69:40,29:40:1440:29:1032:-72.4224,0,-109.047	0/0:248:248,0:248:8841:0:0:0,-74.6554,-794.557	0/1:75:37,38:37:1324:38:1356:-99.7561,0,-96.8762	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4312	0/1:35:15,20:15:540:20:709:-53.5532,0,-38.3943	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.198	0/1:30:10,19:10:360:19:672:-51.7174,0,-23.6191	0/1:29:10,19:10:356:19:680:-52.7993,0,-23.6336	0/0:27:27,0:27:964:0:0:0,-8.12781,-86.9887	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4951	0/1:30:17,13:17:608:13:468:-33.4062,0,-45.95	0/1:22:9,13:9:320:13:468:-35.837,0,-22.5197	0/0:114:114,0:114:4055:0:0:0,-34.3174,-364.498	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.879
chr09	9551380	.	C	A	93273.1	PASS	AB=0.511884;ABP=7.91336;AC=127;AF=0.682796;AN=186;AO=4614;CIGAR=1X;DP=6569;DPB=6569;DPRA=0;EPP=9996.14;EPPR=4220.01;GTI=2;LEN=1;MEANALT=1.11828;MQM=59.096;MQMR=59.7575;NS=93;NUMALT=1;ODDS=0.691119;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=163940;QR=68811;RO=1942;RPL=3;RPP=9996.14;RPPR=4220.01;RPR=4611;RUN=1;SAF=0;SAP=10022.2;SAR=4614;SRF=0;SRP=4220.01;SRR=1942;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:34,31:34:1212:31:1116:-81.1319,0,-89.8194	1/1:81:0,81:0:0:81:2848:-256.441,-24.3834,0	1/1:61:1,60:1:36:60:2143:-188.624,-14.7646,0	1/1:132:0,132:0:0:132:4691:-422.046,-39.736,0	0/1:49:29,19:29:1040:19:676:-46.344,0,-79.1048	0/1:62:31,31:31:1084:31:1093:-79.9025,0,-79.205	1/1:140:1,139:1:36:139:4970:-443.525,-38.5459,0	0/1:120:59,60:59:2099:60:2129:-155.623,0,-152.968	0/1:67:27,40:27:956:40:1428:-108.101,0,-66.1867	0/1:76:46,30:46:1618:30:1059:-72.7421,0,-122.655	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	1/1:38:0,38:0:0:38:1360:-122.648,-11.4391,0	0/1:34:16,18:16:568:18:633:-46.987,0,-41.2168	0/1:35:17,18:17:582:18:640:-47.3676,0,-42.1653	0/1:26:14,12:14:492:12:423:-30.5331,0,-36.7852	0/1:21:12,9:12:419:9:324:-23.1735,0,-31.7206	0/1:29:14,15:14:504:15:536:-39.5559,0,-36.9682	1/1:21:0,21:0:0:21:743:-67.158,-6.32163,0	0/1:22:9,12:9:320:12:412:-30.6369,0,-22.4613	0/1:154:72,82:72:2571:82:2931:-217.487,0,-185.275	0/1:90:51,38:51:1806:38:1352:-94.0148,0,-135.633	0/1:113:78,34:78:2756:34:1194:-73.6763,0,-214.193	1/1:135:0,135:0:0:135:4792:-430.771,-40.6391,0	0/1:116:57,59:57:2018:59:2097:-153.972,0,-146.971	1/1:42:0,42:0:0:42:1504:-135.629,-12.6433,0	0/1:296:144,151:144:5124:151:5342:-391.657,0,-372.063	1/1:187:0,187:0:0:187:6658:-599.237,-56.2926,0	0/1:14:4,10:4:144:10:360:-28.508,0,-9.0992	0/1:234:111,123:111:3962:123:4346:-320.299,0,-286.32	0/1:114:51,63:51:1811:63:2219:-165.11,0,-128.913	0/1:113:50,63:50:1780:63:2250:-167.125,0,-126.466	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:12:5,7:5:180:7:243:-18.5843,0,-12.9393	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:107:45,62:45:1584:62:2181:-164.329,0,-110.636	0/1:221:111,110:111:3960:110:3914:-285.776,0,-290.055	0/1:20:10,10:10:352:10:360:-26.7221,0,-25.9976	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:97:0,97:0:0:97:3445:-310.176,-29.1999,0	0/1:11:3,8:3:108:8:279:-22.1184,0,-6.76342	0/1:131:62,69:62:2193:69:2468:-182.848,0,-158.198	0/1:32:14,18:14:481:18:635:-47.8216,0,-33.9821	0/1:33:16,17:16:564:17:598:-44.1806,0,-41.1541	1/1:90:0,90:0:0:90:3196:-287.035,-27.0927,0	1/1:84:0,84:0:0:84:2997:-269.853,-25.2865,0	1/1:86:0,86:0:0:86:3009:-270.973,-25.8886,0	0/1:81:45,36:45:1591:36:1268:-90.0303,0,-119.092	0/1:102:33,69:33:1175:69:2476:-192.111,0,-75.0339	1/1:154:0,154:0:0:154:5490:-494.043,-46.3586,0	0/1:6:2,4:2:72:4:136:-10.759,0,-5.03054	1/1:63:0,63:0:0:63:2249:-202.632,-18.9649,0	1/1:77:0,77:0:0:77:2752:-247.853,-23.1793,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:89:41,48:41:1453:48:1712:-127.552,0,-104.271	0/1:46:22,24:22:784:24:843:-62.3319,0,-57.0109	0/1:8:1,7:1:36:7:252:-20.6173,0,-1.19003	0/1:15:8,7:8:284:7:248:-18.1487,0,-21.3842	0/1:56:28,28:28:984:28:1004:-73.7756,0,-72.0118	0/1:66:34,32:34:1203:32:1140:-83.0281,0,-88.6611	.:.:.:.:.:.:.:.	0/1:119:52,63:52:1852:63:2246:-167.423,0,-131.748	0/1:152:75,77:75:2684:77:2738:-200.737,0,-196.045	0/1:67:30,37:30:1058:37:1328:-99.6532,0,-75.3606	1/1:68:0,68:0:0:68:2436:-219.052,-20.47,0	0/1:146:59,86:59:2088:86:3013:-227.329,0,-144.165	0/1:64:32,32:32:1144:32:1152:-84.718,0,-84.0009	1/1:3:0,3:0:0:3:108:-10.0642,-0.90309,0	1/1:70:0,70:0:0:70:2499:-225.126,-21.0721,0	0/1:58:33,25:33:1163:25:887:-62.6817,0,-87.5121	0/1:13:4,9:4:144:9:315:-24.7738,0,-9.40023	1/1:125:0,125:0:0:125:4459:-401.083,-37.6288,0	0/1:27:21,6:21:756:6:216:-11.6627,0,-60.2394	1/1:138:0,138:0:0:138:4903:-441.299,-41.5421,0	1/1:77:0,77:0:0:77:2760:-248.493,-23.1793,0	0/1:79:30,49:30:1050:49:1755:-134.393,0,-71.0274	0/1:58:28,30:28:991:30:1080:-80.0359,0,-72.0438	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:54:0,54:0:0:54:1935:-174.373,-16.2556,0	0/1:69:28,41:28:983:41:1452:-110.122,0,-68.0115	1/1:244:0,244:0:0:244:8638:-776.297,-73.4513,0	0/1:76:38,38:38:1322:38:1325:-96.6653,0,-96.3932	1/1:28:0,28:0:0:28:1004:-90.6697,-8.42884,0	0/1:34:19,15:19:650:15:536:-38.3336,0,-48.5541	1/1:66:0,66:0:0:66:2334:-210.307,-19.868,0	0/1:32:20,12:20:691:12:419:-28.3396,0,-52.8774	0/1:30:20,10:20:693:10:346:-22.4315,0,-53.6585	1/1:27:0,26:0:0:26:919:-82.6066,-7.82678,0	1/1:9:0,9:0:0:9:309:-28.13,-2.70927,0	0/1:29:13,16:13:456:16:553:-41.3272,0,-32.6434	0/1:23:13,10:13:468:10:360:-25.8191,0,-35.536	1/1:109:0,108:0:0:108:3825:-343.506,-32.5112,0	1/1:50:0,50:0:0:50:1778:-160.239,-15.0515,0
chr09	9824992	.	AGGGAAA	AGGAAAA,AGGAAAG	127230	PASS	AB=0.50172,0.489018;ABP=3.10741,6.96883;AC=130,58;AF=0.691489,0.308511;AN=188;AO=4201,1859;CIGAR=3M1X3M,3M1X2M1X;DP=6109;DPB=6109;DPRA=0,0.997538;EPP=9099.33,4031.1;EPPR=5.18177;GTI=2;LEN=1,7;MEANALT=2.09574,2.49206;MQM=59.6382,59.6256;MQMR=60;NS=94;NUMALT=2;ODDS=0.607558;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=150398,65098;QR=33;RO=1;RPL=4201,1859;RPP=9125.37,4039.78;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=3,1;SAP=9099.33,4031.1;SAR=4198,1858;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:16:0,10,6:0:0:10,6:360,208:-46.6243,-17.2417,-14.2314,-29.734,0,-27.9278	1/1:77:0,77,0:0:0:77,0:2768,0:-249.331,-23.1793,0,-249.331,-23.1793,-249.331	1/1:75:0,75,0:0:0:75,0:2667,0:-239.96,-22.5773,0,-239.96,-22.5773,-239.96	1/1:129:1,126,0:1:33:126,0:4517,0:-403.462,-35.2216,0,-403.763,-37.9298,-406.431	1/2:40:0,26,14:0:0:26,14:936,497:-117.152,-40.8455,-33.0188,-76.6628,0,-72.4484	1/2:40:0,10,30:0:0:10,30:360,1057:-115.786,-86.4101,-83.3998,-29.734,0,-20.7031	1/1:72:0,71,0:0:0:71,0:2544,0:-228.842,-21.3731,0,-228.842,-21.3731,-228.842	1/1:73:0,65,7:0:0:65,7:2324,223:-209.037,-19.567,0,-191.085,-1.53383,-188.978	1/2:83:0,34,46:0:0:34,46:1220,1643:-233.482,-133.968,-123.733,-99.5356,0,-85.6882	1/2:72:0,49,22:0:0:49,22:1760,755:-204.882,-61.3017,-46.5512,-143.589,0,-136.966	1/2:64:0,45,19:0:0:45,19:1607,665:-185.469,-54.4522,-40.9059,-131.368,0,-125.649	1/1:52:0,52,0:0:0:52,0:1872,0:-168.557,-15.6536,0,-168.557,-15.6536,-168.557	1/2:57:0,29,27:0:0:29,27:1040,952:-162.349,-77.5282,-68.7984,-84.8398,0,-76.712	1/2:76:0,42,34:0:0:42,34:1499,1202:-220.427,-98.2405,-85.5972,-122.542,0,-112.307	1/2:35:0,16,19:0:0:16,19:576,665:-101.454,-54.4536,-49.6371,-47.3562,0,-41.6366	1/2:41:0,24,17:0:0:24,17:864,603:-119.979,-49.4781,-42.2534,-70.8578,0,-65.7403	1/2:58:0,37,21:0:0:37,21:1323,745:-168.928,-61.0509,-49.9128,-108.232,0,-101.911	1/1:53:0,52,0:0:0:52,0:1868,0:-168.123,-15.6536,0,-168.123,-15.6536,-168.123	1/2:31:0,16,14:0:0:16,14:568,500:-87.0765,-40.7954,-35.9789,-46.3231,0,-42.1087	1/2:67:0,29,38:0:0:29,38:1040,1318:-192.292,-107.461,-98.7314,-85.1845,0,-73.7454	1/2:69:0,36,33:0:0:36,33:1292,1132:-197.622,-92.2259,-81.3888,-105.747,0,-95.8127	1/2:42:0,5,37:0:0:5,37:180,1314:-122.109,-107.422,-105.917,-15.046,0,-3.90788	1/1:81:0,81,0:0:0:81,0:2908,0:-261.938,-24.3834,0,-261.938,-24.3834,-261.938	1/2:78:0,56,22:0:0:56,22:1999,754:-224.466,-61.5482,-44.6905,-163.264,0,-156.642	1/1:32:0,32,0:0:0:32,0:1152,0:-103.977,-9.63296,0,-103.977,-9.63296,-103.977	1/2:147:0,93,53:0:0:93,53:3321,1833:-419.77,-149.009,-121.014,-270.828,0,-254.874	1/1:123:0,122,0:0:0:122,0:4384,0:-394.376,-36.7257,0,-394.376,-36.7257,-394.376	1/2:29:0,13,15:0:0:13,15:468,540:-82.301,-44.1129,-40.1995,-38.2421,0,-33.7267	1/2:159:0,72,85:0:0:72,85:2584,3001:-454.997,-244.221,-222.546,-210.778,0,-185.19	1/2:181:0,63,116:0:0:63,116:2236,4023:-508.932,-327.015,-308.05,-181.972,0,-147.052	1/2:207:0,112,91:0:0:112,91:3993,3148:-581.009,-255.861,-222.146,-325.215,0,-297.821	1/1:6:0,6,0:0:0:6,0:216,0:-19.7858,-1.80618,0,-19.7858,-1.80618,-19.7858	1/2:7:0,6,1:0:0:6,1:216,36:-20.9217,-3.29724,-1.49106,-17.9843,0,-17.6833	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:2:0,1,1:0:0:1,1:36,30:-5.66589,-2.69854,-2.39751,-3.29724,0,-2.99621	1/2:166:0,83,82:0:0:83,82:2980,2895:-478.764,-235.739,-210.754,-243.021,0,-218.336	1/2:120:0,69,51:0:0:69,51:2472,1772:-345.967,-144.374,-123.603,-201.944,0,-186.592	1/2:69:0,40,29:0:0:40,29:1427,993:-197.243,-80.946,-68.9048,-116.645,0,-107.915	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:103:0,103,0:0:0:103,0:3687,0:-332.018,-31.0061,0,-332.018,-31.0061,-332.018	1/2:28:0,8,20:0:0:8,20:288,716:-82.1775,-58.6775,-56.2692,-23.8592,0,-17.8386	1/2:57:0,20,36:0:0:20,36:720,1271:-162.267,-103.525,-97.5048,-58.7771,0,-47.94	1/2:54:0,27,27:0:0:27,27:968,928:-154.656,-75.7002,-67.5724,-79.307,0,-71.1792	1/2:38:0,19,19:0:0:19,19:675,669:-109.736,-54.7362,-49.0166,-55.3527,0,-49.6331	1/1:59:0,59,0:0:0:59,0:2112,0:-190.34,-17.7608,0,-190.34,-17.7608,-190.34	1/1:75:0,74,0:0:0:74,0:2656,0:-238.861,-22.2762,0,-238.861,-22.2762,-238.861	1/1:100:0,100,0:0:0:100,0:3588,0:-323.114,-30.103,0,-323.114,-30.103,-323.114	1/2:65:0,24,40:0:0:24,40:845,1397:-182.473,-113.681,-106.456,-68.8404,0,-56.7992	1/2:94:0,62,31:0:0:62,31:2224,1085:-269.764,-88.3604,-69.6965,-181.493,0,-172.161	1/1:57:0,57,0:0:0:57,0:2048,0:-184.59,-17.1587,0,-184.59,-17.1587,-184.59	1/2:11:0,5,6:0:0:5,6:180,214:-32.4878,-17.7992,-16.2941,-15.0469,0,-13.2407	1/1:97:0,97,0:0:0:97,0:3481,0:-313.406,-29.1999,0,-313.406,-29.1999,-313.406	1/1:18:0,18,0:0:0:18,0:644,0:-58.2897,-5.41854,0,-58.2897,-5.41854,-58.2897	1/2:9:0,4,5:0:0:4,5:144,173:-26.1601,-14.4042,-13.2001,-12.1095,0,-10.6043	1/2:54:0,31,23:0:0:31,23:1112,804:-155.961,-65.2626,-55.9307,-91.0502,0,-84.1265	1/2:40:0,25,14:0:0:25,14:900,493:-113.562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chr09	9825001	.	G	A	85514.5	PASS	AB=0.510943;ABP=6.85981;AC=129;AF=0.68617;AN=188;AO=4191;CIGAR=1X;DP=6013;DPB=6013;DPRA=32.3172;EPP=9077.61;EPPR=3937.72;GTI=3;LEN=1;MEANALT=1.06452;MQM=59.602;MQMR=59.6101;NS=94;NUMALT=1;ODDS=1.20855;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=150091;QR=64774;RO=1816;RPL=4191;RPP=9103.65;RPPR=3946.4;RPR=0;RUN=1;SAF=3;SAP=9077.61;SAR=4188;SRF=1;SRP=3937.72;SRR=1815;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:6,10:6:208:10:356:-27.5648,0,-14.237	1/1:78:0,78:0:0:78:2804:-252.569,-23.4803,0	1/1:75:0,75:0:0:75:2688:-241.75,-22.5773,0	1/1:128:0,128:0:0:128:4596:-413.788,-38.5318,0	0/1:40:14,26:14:504:26:936:-72.4484,0,-33.6523	0/1:40:30,10:30:1072:10:360:-20.7031,0,-84.7513	1/1:69:0,69:0:0:69:2468:-222.364,-20.7711,0	1/1:73:6,67:6:216:67:2392:-195.67,-2.18468,0	0/1:84:49,35:49:1748:35:1256:-88.0579,0,-132.31	0/1:71:21,50:21:756:50:1796:-140.542,0,-46.9871	0/1:62:17,45:17:612:45:1620:-127.421,0,-36.7472	1/1:52:0,52:0:0:52:1868:-168.197,-15.6536,0	0/1:56:26,30:26:936:30:1076:-80.2828,0,-67.7018	0/1:74:31,43:31:1103:43:1544:-116.949,0,-77.299	0/1:35:19,16:19:676:16:576:-41.6366,0,-50.631	0/1:40:17,23:17:608:23:820:-62.0813,0,-43.0062	0/1:56:19,37:19:684:37:1324:-102.604,0,-45.0326	1/1:52:0,52:0:0:52:1872:-168.726,-15.6536,0	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.5826	0/1:66:37,28:37:1300:28:1008:-71.206,0,-97.455	0/1:67:31,35:31:1108:35:1260:-93.507,0,-79.8067	0/1:41:36,5:36:1280:5:180:-4.20891,0,-103.159	1/1:79:0,79:0:0:79:2832:-255.103,-23.7814,0	0/1:78:22,56:22:788:56:2003:-157.002,0,-47.7598	1/1:30:0,30:0:0:30:1080:-97.5086,-9.0309,0	0/1:147:53,94:53:1876:94:3360:-258.361,0,-124.86	1/1:120:0,120:0:0:120:4289:-386.161,-36.1236,0	0/1:28:15,13:15:540:13:460:-33.3047,0,-40.5031	0/1:153:79,73:79:2809:73:2619:-189.838,0,-206.44	0/1:178:114,64:114:4076:64:2288:-152.325,0,-313.274	0/1:204:93,111:93:3313:111:3958:-294.858,0,-236.871	1/1:6:0,6:0:0:6:216:-19.7858,-1.80618,0	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:164:83,81:83:2960:81:2908:-212.519,0,-217.262	0/1:117:48,69:48:1708:69:2480:-188.214,0,-118.752	0/1:68:28,40:28:984:40:1436:-109.027,0,-68.3952	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:103:0,103:0:0:103:3696:-332.828,-31.0061,0	0/1:28:20,8:20:716:8:284:-17.4745,0,-56.2689	0/1:57:37,20:37:1320:20:720:-47.9608,0,-101.934	0/1:55:27,28:27:957:28:1000:-73.7558,0,-69.8849	0/1:37:18,19:18:640:19:680:-50.3864,0,-46.7818	1/1:58:0,58:0:0:58:2076:-187.101,-17.4597,0	1/1:76:0,76:0:0:76:2732:-246.048,-22.8783,0	1/1:97:0,97:0:0:97:3454:-311.047,-29.1999,0	0/1:62:38,24:38:1360:24:852:-58.3365,0,-104.032	0/1:93:31,62:31:1104:62:2228:-172.783,0,-71.6716	1/1:57:0,57:0:0:57:2048:-184.59,-17.1587,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4768	1/1:99:0,99:0:0:99:3530:-317.819,-29.802,0	1/1:18:0,18:0:0:18:648:-58.651,-5.41854,0	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:52:20,31:20:716:31:1112:-84.7612,0,-49.1453	0/1:38:13,25:13:464:25:896:-69.5142,0,-30.656	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:19:2,17:2:72:17:612:-49.6939,0,-1.11715	0/1:73:26,47:26:936:47:1688:-130.23,0,-62.5843	0/1:227:152,75:152:5427:75:2675:-172.335,0,-419.593	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:82:39,43:39:1400:43:1540:-114.208,0,-101.615	0/1:109:46,63:46:1640:63:2256:-170.48,0,-115.071	0/1:51:26,25:26:936:25:900:-65.9639,0,-68.8794	1/1:47:0,47:0:0:47:1687:-152.028,-14.1484,0	0/1:87:47,40:47:1665:40:1436:-103.285,0,-123.926	0/1:54:40,14:40:1401:14:496:-28.7163,0,-110.128	1/1:27:0,27:0:0:27:964:-87.0722,-8.12781,0	1/1:64:0,64:0:0:64:2288:-205.967,-19.2659,0	0/1:59:29,30:29:1040:30:1076:-79.3903,0,-76.1527	0/1:25:6,19:6:216:19:676:-53.2102,0,-12.2508	1/1:142:0,141:0:0:141:5035:-452.732,-42.4452,0	0/1:34:22,12:22:788:12:428:-28.6238,0,-60.9617	1/1:126:0,125:0:0:125:4482:-403.283,-37.6288,0	1/1:72:0,72:0:0:72:2588:-233.164,-21.6742,0	0/1:61:30,31:30:1080:31:1112:-82.0285,0,-79.1422	0/1:65:19,46:19:676:46:1640:-128.312,0,-41.1714	1/1:3:0,3:0:0:3:108:-10.0717,-0.90309,0	1/1:80:0,80:0:0:80:2872:-258.685,-24.0824,0	0/1:23:7,16:7:252:16:572:-44.8814,0,-16.1053	1/1:114:0,114:0:0:114:4076:-366.995,-34.3174,0	0/1:80:44,36:44:1576:36:1289:-92.2305,0,-118.042	1/1:55:0,55:0:0:55:1968:-177.334,-16.5567,0	0/1:39:21,18:21:752:18:644:-46.5504,0,-56.2661	1/1:101:1,100:1:32:100:3580:-319.155,-27.2047,0	0/1:38:22,16:22:784:16:576:-40.7194,0,-59.4284	0/1:63:35,28:35:1244:28:1008:-72.0633,0,-93.2998	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:50:0,50:0:0:50:1790:-161.369,-15.0515,0	0/1:101:42,59:42:1499:59:2093:-158.218,0,-104.652	0/1:42:30,12:30:1068:12:424:-25.8522,0,-83.6755	1/1:36:1,35:1:36:35:1244:-108.652,-7.23881,0	1/1:58:0,58:0:0:58:2071:-186.653,-17.4597,0
chr09	9874436	.	G	A	89789.5	PASS	AB=0.490954;ABP=5.91763;AC=125;AF=0.672043;AN=186;AO=4435;CIGAR=1X;DP=6523;DPB=6523;DPRA=35.4402;EPP=9633.49;EPPR=4537.04;GTI=2;LEN=1;MEANALT=1;MQM=59.9321;MQMR=59.988;NS=93;NUMALT=1;ODDS=0.695455;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158746;QR=74675;RO=2088;RPL=0;RPP=9633.49;RPPR=4537.04;RPR=4435;RUN=1;SAF=4435;SAP=9633.49;SAR=0;SRF=2088;SRP=4537.04;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:25,49:25:892:49:1756:-136.04,0,-58.3235	1/1:57:0,57:0:0:57:2029:-182.881,-17.1587,0	1/1:96:1,95:1:36:95:3400:-302.617,-25.3006,0	1/1:142:0,142:0:0:142:5072:-456.626,-42.7463,0	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/1:37:14,23:14:500:23:828:-63.706,0,-34.1981	1/1:82:0,82:0:0:82:2923:-263.301,-24.6845,0	0/1:74:40,34:40:1413:34:1220:-87.8022,0,-105.189	0/1:122:59,63:59:2108:63:2238:-164.957,0,-153.264	0/1:67:30,37:30:1065:37:1332:-100.013,0,-75.9903	0/1:54:23,31:23:828:31:1112:-84.1357,0,-58.5885	1/1:102:0,102:0:0:102:3664:-329.963,-30.7051,0	0/1:81:43,38:43:1525:38:1356:-97.9571,0,-113.158	0/1:47:23,24:23:824:24:864:-63.9342,0,-60.3349	0/1:53:39,14:39:1389:14:504:-29.7435,0,-109.352	0/1:62:36,26:36:1296:26:917:-64.1807,0,-98.2801	0/1:32:18,14:18:640:14:504:-36.0651,0,-48.2964	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:56:29,27:29:1036:27:964:-70.2191,0,-76.6962	0/1:134:61,73:61:2196:73:2604:-194.271,0,-157.567	0/1:134:62,72:62:2220:72:2580:-192.111,0,-159.726	0/1:84:50,34:50:1784:34:1216:-84.46,0,-135.556	1/1:77:0,77:0:0:77:2753:-248.01,-23.1793,0	0/1:36:14,22:14:504:22:788:-60.3985,0,-34.861	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	0/1:161:85,76:85:3048:76:2724:-196.937,0,-226.083	1/1:173:0,173:0:0:173:6185:-556.742,-52.0782,0	0/1:43:20,23:20:716:23:805:-59.8232,0,-51.8234	0/1:137:76,61:76:2717:61:2169:-154.234,0,-203.531	0/1:103:45,58:45:1620:58:2058:-154.482,0,-115.084	0/1:81:35,46:35:1256:46:1652:-124.585,0,-88.9619	.:.:.:.:.:.:.:.	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:18:10,8:10:352:8:288:-20.8489,0,-26.5997	0/1:217:116,101:116:4160:101:3608:-259.534,0,-309.259	0/1:75:32,43:32:1148:43:1540:-116.316,0,-81.0526	0/1:40:23,17:23:824:17:608:-43.0108,0,-62.4421	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	0/1:38:17,21:17:612:21:748:-56.2062,0,-43.9743	0/1:66:38,28:38:1368:28:1008:-71.1122,0,-103.553	0/1:77:36,41:36:1296:41:1476:-109.957,0,-93.7646	0/1:62:32,30:32:1152:30:1080:-78.8494,0,-85.3263	1/1:97:0,97:0:0:97:3437:-309.544,-29.1999,0	1/1:67:0,67:0:0:67:2377:-214.187,-20.169,0	1/1:100:0,100:0:0:100:3584:-322.703,-30.103,0	0/1:63:30,33:30:1061:33:1184:-87.9011,0,-76.8345	0/1:74:44,30:44:1580:30:1076:-74.8766,0,-120.213	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	1/1:29:0,29:0:0:29:1032:-93.1928,-8.72987,0	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:147:72,75:72:2584:75:2680:-196.426,0,-188.553	0/1:39:17,22:17:597:22:788:-59.5046,0,-42.316	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:81:37,44:37:1313:44:1580:-118.1,0,-94.0863	0/1:71:35,36:35:1260:36:1296:-95.5708,0,-92.3324	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:106:52,54:52:1864:54:1928:-141.888,0,-136.13	0/1:87:48,39:48:1682:39:1396:-99.7471,0,-125.473	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	0/1:111:53,58:53:1892:58:2084:-154.416,0,-137.144	0/1:174:106,68:106:3793:68:2432:-166.756,0,-289.185	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:47:22,25:22:792:25:888:-66.0906,0,-57.4573	0/1:17:5,12:5:180:12:428:-33.3667,0,-11.4346	1/1:96:0,96:0:0:96:3452:-310.866,-28.8989,0	0/1:76:38,38:38:1360:38:1360:-99.8086,0,-99.8223	1/1:94:0,94:0:0:94:3360:-302.612,-28.2968,0	1/1:44:1,43:1:36:43:1521:-133.583,-9.64705,0	0/1:72:37,35:37:1328:35:1240:-90.2187,0,-98.1481	0/1:40:17,23:17:608:23:824:-62.4421,0,-43.0108	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:60:35,25:35:1226:25:900:-63.2592,0,-92.5779	1/1:102:0,102:0:0:102:3664:-329.96,-30.7051,0	0/1:57:31,26:31:1116:26:936:-67.4008,0,-83.593	1/1:63:1,62:1:36:62:2224:-196.826,-15.3666,0	0/1:49:25,24:25:900:24:864:-63.3321,0,-66.5705	1/1:145:1,144:1:36:144:5172:-462.02,-40.0511,0	0/1:23:7,16:7:248:16:576:-45.2513,0,-15.7405	0/1:95:47,48:47:1665:48:1728:-127.207,0,-121.538	1/1:141:0,141:0:0:141:5064:-455.901,-42.4452,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:102:42,60:42:1508:60:2141:-162.246,0,-105.31	0/1:102:80,22:80:2861:22:788:-40.5397,0,-227.021	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	1/1:121:0,121:0:0:121:4348:-391.493,-36.4246,0
chr09	10019507	.	GCAT	ACAT	61352.5	PASS	AB=0.472884;ABP=18.555;AC=124;AF=0.673913;AN=184;AO=2882;CIGAR=1X3M;DP=4190;DPB=4190;DPRA=0;EPP=5626.7;EPPR=2304.41;GTI=3;LEN=1;MEANALT=1.19565;MQM=59.8293;MQMR=59.9712;NS=92;NUMALT=1;ODDS=0.386205;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102595;QR=44845;RO=1285;RPL=75;RPP=5626.7;RPPR=2304.41;RPR=2807;RUN=1;SAF=2882;SAP=6261.19;SAR=0;SRF=1285;SRP=2793.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:130:0,129:0:0:129:4594:-413.264,-38.8329,0	1/1:132:0,131:0:0:131:4669:-419.93,-39.4349,0	0/1:8:1,7:1:35:7:252:-20.6207,0,-1.09039	0/1:13:4,9:4:137:9:307:-24.0468,0,-8.754	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:49:24,25:24:834:25:888:-65.4886,0,-60.6259	0/1:34:21,13:21:729:13:468:-32.2246,0,-55.6939	0/1:43:23,20:23:803:20:696:-50.0181,0,-59.6442	0/1:20:14,6:14:478:6:216:-13.7699,0,-37.3233	1/1:70:0,70:0:0:70:2502:-225.396,-21.0721,0	0/1:44:23,21:23:796:21:741:-53.7663,0,-58.7108	0/1:22:13,8:13:465:8:288:-19.5859,0,-35.5069	0/1:38:20,18:20:705:18:644:-46.8113,0,-52.3357	0/1:26:13,13:13:468:13:453:-33.2728,0,-34.6329	0/1:28:19,9:19:670:9:324:-21.077,0,-52.1973	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:25:14,10:14:502:10:351:-24.3429,0,-37.9328	0/1:97:42,55:42:1455:55:1915:-143.391,0,-102.028	0/1:95:44,49:44:1551:49:1764:-130.684,0,-111.525	0/1:40:22,18:22:787:18:640:-45.8881,0,-59.1136	1/1:40:0,35:0:0:35:1233:-110.908,-10.5361,0	0/1:35:24,11:24:820:11:389:-24.8121,0,-63.5755	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:121:64,57:64:2238:57:1989:-142.856,0,-165.26	1/1:146:0,146:0:0:146:5199:-467.691,-43.9504,0	0/1:24:16,8:16:571:8:288:-19.0427,0,-44.4986	0/1:111:45,66:45:1584:66:2352:-178.517,0,-109.435	0/1:32:16,16:16:564:16:571:-42.0902,0,-41.4569	0/1:24:15,9:15:523:9:324:-22.2811,0,-40.1744	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:15:8,7:8:277:7:248:-18.1487,0,-20.7507	.:.:.:.:.:.:.:.	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:11:10,1:10:352:1:32:0,-0.112017,-28.8188	0/1:111:45,66:45:1577:66:2356:-178.857,0,-108.795	0/1:73:34,39:34:1155:39:1372:-101.802,0,-82.2727	0/1:20:11,9:11:372:9:324:-23.4853,0,-27.785	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:55:0,55:0:0:55:1960:-176.673,-16.5567,0	0/1:30:14,16:14:487:16:568:-42.421,0,-35.1286	0/1:41:21,20:21:722:20:704:-51.3423,0,-52.9557	0/1:38:25,13:25:863:13:468:-31.0205,0,-66.5438	0/1:28:16,12:16:560:12:424:-30.0676,0,-42.2998	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:44:0,42:0:0:42:1488:-133.855,-12.6433,0	1/1:64:0,64:0:0:64:2275:-204.992,-19.2659,0	0/1:48:31,16:31:1091:16:576:-37.6678,0,-84.0097	0/1:68:33,34:33:1166:34:1201:-87.9351,0,-84.8243	1/1:82:0,81:0:0:81:2896:-260.585,-24.3834,0	0/1:7:5,2:5:174:2:72:-4.72951,0,-13.894	1/1:71:0,71:0:0:71:2536:-228.488,-21.3731,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:114:65,49:65:2251:49:1740:-122.567,0,-168.533	0/1:13:4,9:4:141:9:316:-24.8655,0,-9.12364	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:30:19,10:19:663:10:360:-23.7727,0,-51.028	0/1:56:28,28:28:993:28:1008:-74.1787,0,-72.8271	.:.:.:.:.:.:.:.	0/1:110:65,45:65:2237:45:1604:-111.519,0,-168.479	0/1:70:35,34:35:1211:34:1201:-87.263,0,-88.1607	0/1:43:25,18:25:843:18:632:-44.2625,0,-63.2336	1/1:51:0,51:0:0:51:1828:-164.799,-15.3525,0	0/1:77:42,35:42:1464:35:1240:-88.7075,0,-108.874	0/1:46:33,13:33:1177:13:468:-28.6041,0,-92.3904	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:36:0,36:0:0:36:1278:-115.322,-10.8371,0	0/1:29:16,13:16:567:13:464:-33.3676,0,-42.6316	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:56:0,54:0:0:54:1918:-172.638,-16.2556,0	0/1:47:25,22:25:855:22:780:-56.3746,0,-63.1127	1/1:35:0,35:0:0:35:1244:-112.255,-10.5361,0	1/1:92:0,92:0:0:92:3292:-296.443,-27.6948,0	0/1:21:12,9:12:418:9:324:-23.1842,0,-31.6309	0/1:46:23,23:23:795:23:787:-57.2947,0,-58.0174	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:73:0,72:0:0:72:2576:-231.779,-21.6742,0	0/1:67:37,30:37:1315:30:1076:-76.9838,0,-98.4822	1/1:64:0,64:0:0:64:2269:-204.443,-19.2659,0	0/1:27:13,13:13:460:13:464:-33.9296,0,-33.5677	1/1:45:0,45:0:0:45:1608:-145,-13.5464,0	0/1:32:19,13:19:662:13:468:-32.8251,0,-50.2707	1/1:70:0,70:0:0:70:2508:-225.97,-21.0721,0	0/1:19:10,9:10:341:9:324:-23.7863,0,-25.299	0/1:52:26,26:26:910:26:921:-67.5353,0,-66.5613	1/1:38:1,37:1:25:37:1313:-115.962,-8.93928,0	1/1:21:0,21:0:0:21:752:-67.9947,-6.32163,0	0/1:41:14,27:14:481:27:972:-75.4557,0,-31.2726	0/1:47:31,16:31:1093:16:576:-38.0257,0,-84.5304	1/1:74:0,73:0:0:73:2595:-233.471,-21.9752,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0
chr09	10331357	.	TCCC	TCCT	101456	PASS	AB=0.483359;ABP=14.0679;AC=128;AF=0.680851;AN=188;AO=5023;CIGAR=3M1X;DP=7416;DPB=7415.25;DPRA=13.2796;EPP=10910.3;EPPR=5088.73;GTI=1;LEN=1;MEANALT=1.25806;MQM=58.0844;MQMR=59.9324;NS=94;NUMALT=1;ODDS=3.04405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179723;QR=82941;RO=2366;RPL=0;RPP=10910.3;RPPR=5088.73;RPR=5023;RUN=1;SAF=5023;SAP=10910.3;SAR=0;SRF=2366;SRP=5140.71;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:22,23:22:761:23:815:-59.4719,0,-55.2622	1/1:56:0,56:0:0:56:1997:-179.842,-16.8577,0	1/1:134:0,134:0:0:134:4791:-428.072,-40.338,0	1/1:173:0,173:0:0:173:6199:-557.529,-52.0782,0	0/1:90:46,44:46:1596:44:1571:-113.699,0,-116.833	0/1:36:11,25:11:393:25:882:-68.6977,0,-24.8739	1/1:53:0,52:0:0:52:1859:-167.232,-15.6536,0	0/1:149:57,92:57:1998:92:3290:-250.356,0,-135.238	0/1:65:42,23:42:1468:23:820:-54.4634,0,-112.833	0/1:40:20,19:20:716:19:676:-49.1655,0,-52.8107	0/1:34:13,21:13:458:21:756:-58.0646,0,-31.3194	1/1:82:0,82:0:0:82:2935:-263.999,-24.6845,0	0/1:63:29,33:29:1009:33:1180:-87.4075,0,-72.2033	0/1:42:19,22:19:675:22:779:-57.8129,0,-48.4625	0/1:58:29,29:29:1016:29:1044:-76.3863,0,-74.2921	0/1:40:19,21:19:672:21:744:-53.8745,0,-48.7659	0/1:26:20,6:20:711:6:216:-11.9557,0,-56.49	1/1:30:0,30:0:0:30:1067:-96.0516,-9.0309,0	0/1:32:18,14:18:623:14:504:-35.9779,0,-46.7607	0/1:248:121,127:121:4268:127:4560:-335.767,0,-309.649	0/1:99:54,45:54:1886:45:1608:-114.479,0,-140.128	0/1:242:161,80:161:5674:80:2863:-184.78,0,-437.878	1/1:100:0,100:0:0:100:3588:-322.498,-30.103,0	0/1:37:19,18:19:659:18:648:-47.4444,0,-48.4931	1/1:107:1,106:1:36:106:3808:-338.982,-28.6119,0	0/1:173:93,79:93:3261:79:2831:-202.707,0,-241.599	1/1:254:0,251:0:0:251:8974:-806.372,-75.5585,0	0/1:34:16,18:16:549:18:648:-48.3009,0,-39.4965	0/1:311:191,120:191:6698:120:4296:-292.794,0,-508.8	0/1:95:45,50:45:1579:50:1792:-132.846,0,-113.801	0/1:89:51,37:51:1789:37:1328:-93.0609,0,-134.587	1/1:4:0,4:0:0:4:144:-12.8746,-1.20412,0	0/1:19:11,8:11:384:8:288:-20.5469,0,-29.1749	1/1:6:0,6:0:0:6:208:-19.0537,-1.80618,0	0/1:4:2,2:2:72:2:72:-5.62813,0,-5.6326	0/1:11:5,6:5:174:6:216:-16.3643,0,-12.6901	0/1:156:71,85:71:2516:85:3051:-227.546,0,-179.734	0/1:120:61,57:61:2154:57:2033:-146.951,0,-158.252	0/1:52:27,25:27:942:25:896:-65.2555,0,-69.4386	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:79:0,78:0:0:78:2787:-250.73,-23.4803,0	0/1:25:9,16:9:313:16:576:-42.7014,0,-20.98	0/1:179:89,89:89:3085:89:3174:-231.394,0,-223.832	0/1:44:16,28:16:564:28:1000:-77.0269,0,-37.8447	0/1:68:31,36:31:1092:36:1275:-93.3197,0,-78.1768	1/1:93:0,93:0:0:93:3331:-299.468,-27.9958,0	1/1:145:0,144:0:0:144:5146:-461.394,-43.3483,0	1/1:205:0,205:0:0:205:7309:-654.547,-61.7112,0	0/1:77:41,36:41:1449:36:1288:-93.0159,0,-107.526	0/1:113:40,72:40:1424:72:2588:-198.948,0,-94.3818	1/1:84:0,83:0:0:83:2978:-267.658,-24.9855,0	0/1:5:4,1:4:125:1:36:-2.09312,0,-10.054	1/1:114:1,113:1:36:113:4048:-360.253,-30.7191,0	1/1:53:0,53:0:0:53:1904:-171.259,-15.9546,0	0/0:6:6,0:6:214:0:0:0,-1.80618,-19.6078	0/1:128:60,66:60:2094:66:2368:-174.077,0,-150.515	0/1:42:25,17:25:860:17:590:-40.6768,0,-65.0679	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:5,2:5:167:2:72:-4.72951,0,-13.2507	0/1:67:35,32:35:1242:32:1152:-83.1969,0,-91.9095	0/1:57:22,35:22:770:35:1247:-94.8807,0,-52.4607	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:202:89,113:89:3107:113:4037:-301.583,0,-219.052	0/1:140:77,63:77:2647:63:2264:-161.821,0,-196.333	0/1:50:19,31:19:673:31:1112:-85.1629,0,-45.8459	1/1:69:0,69:0:0:69:2480:-223.051,-20.7711,0	0/1:116:54,60:54:1895:60:2152:-158.951,0,-136.206	0/1:132:95,37:95:3313:37:1320:-78.9101,0,-258.656	1/1:26:0,26:0:0:26:928:-83.645,-7.82678,0	1/1:28:0,28:0:0:28:1008:-91.006,-8.42884,0	0/1:32:14,18:14:491:18:644:-48.3582,0,-34.8885	0/1:13:8,5:8:279:5:180:-12.6387,0,-21.5344	1/1:76:0,76:0:0:76:2708:-242.842,-22.8783,0	0/1:53:22,31:22:765:31:1108:-83.7219,0,-53.2145	1/1:93:0,91:0:0:91:3263:-293.404,-27.3937,0	1/1:109:0,109:0:0:109:3904:-351.419,-32.8123,0	0/1:117:65,52:65:2266:52:1861:-132.429,0,-168.982	0/1:89:45,43:45:1590:43:1544:-111.531,0,-116.564	1/1:8:0,8:0:0:8:288:-26.2502,-2.40824,0	1/1:53:0,53:0:0:53:1878:-169.242,-15.9546,0	0/1:109:56,53:56:1969:53:1900:-137.491,0,-144.671	1/1:61:0,61:0:0:61:2175:-195.613,-18.3628,0	0/1:48:21,27:21:743:27:959:-72.0876,0,-52.7447	1/1:63:0,63:0:0:63:2242:-201.886,-18.9649,0	0/1:28:17,11:17:606:11:396:-27.4504,0,-46.4425	1/1:133:0,132:0:0:132:4752:-426.581,-39.736,0	0/1:25:13,12:13:441:12:432:-31.6674,0,-32.4874	0/1:85:47,38:47:1673:38:1364:-95.6956,0,-125.271	1/1:57:0,57:0:0:57:2040:-183.135,-17.1587,0	1/1:27:0,27:0:0:27:972:-87.5905,-8.12781,0	0/1:78:36,41:36:1276:41:1456:-107.734,0,-91.712	0/1:55:29,26:29:999:26:932:-67.6306,0,-73.6624	1/1:125:0,125:0:0:125:4458:-399.381,-37.6288,0	1/1:106:0,106:0:0:106:3796:-341.739,-31.9092,0
chr09	10604100	.	C	T	37193.1	PASS	AB=0.494379;ABP=4.23078;AC=60;AF=0.319149;AN=188;AO=2211;CIGAR=1X;DP=6695;DPB=6695;DPRA=1.28924;EPP=4786.78;EPPR=9651.06;GTI=1;LEN=1;MEANALT=1.01613;MQM=59.986;MQMR=59.9902;NS=94;NUMALT=1;ODDS=1.16064;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79116;QR=159163;RO=4483;RPL=2;RPP=4786.78;RPPR=9651.06;RPR=2209;RUN=1;SAF=2211;SAP=4804.14;SAR=0;SRF=4483;SRP=9737.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:117:117,0:117:4167:0:0:0,-35.2205,-375.214	0/0:98:96,1:96:3435:1:36:0,-25.9615,-305.765	0/0:123:123,0:123:4357:0:0:0,-37.0267,-392.307	0/1:68:40,28:40:1427:28:1008:-70.5663,0,-108.257	0/1:62:27,35:27:948:35:1251:-94.2304,0,-66.9708	0/0:55:55,0:55:1950:0:0:0,-16.5566,-175.772	0/1:155:86,69:86:3050:69:2472:-176.074,0,-228.071	0/1:56:28,28:28:996:28:1008:-74.1787,0,-73.0972	0/1:74:31,43:31:1108:43:1513:-114.185,0,-77.7548	0/1:73:44,29:44:1558:29:1044:-72.2996,0,-118.535	0/0:80:80,0:80:2838:0:0:0,-24.0824,-255.659	0/1:48:26,22:26:932:22:783:-56.3435,0,-69.7494	0/1:105:55,50:55:1941:50:1792:-129.954,0,-143.356	0/1:40:22,18:22:788:18:648:-46.6107,0,-59.2036	0/1:50:22,28:22:792:28:1004:-75.6244,0,-56.5542	0/1:105:52,53:52:1847:53:1904:-140.03,0,-134.901	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/1:42:29,13:29:1036:13:468:-29.8164,0,-80.9107	0/1:92:42,50:42:1504:50:1767:-131.616,0,-107.96	0/1:70:36,34:36:1259:34:1208:-87.9521,0,-92.5395	0/1:51:16,35:16:568:35:1244:-96.9121,0,-36.0993	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:31:13,18:13:460:18:648:-49.32,0,-32.4034	0/0:11:11,0:11:372:0:0:0,-3.31133,-33.8038	0/1:243:121,122:121:4297:122:4383:-321.491,0,-313.758	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.686	0/1:40:24,16:24:860:16:565:-39.1384,0,-65.6806	0/1:84:38,46:38:1339:46:1643:-122.871,0,-95.5227	0/1:167:89,78:89:3158:78:2789:-200.979,0,-234.174	0/1:130:47,83:47:1684:83:2957:-227.228,0,-112.713	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:10:7,3:7:244:3:108:-7.06487,0,-19.2891	0/1:150:80,70:80:2860:70:2511:-181.087,0,-212.483	0/1:154:77,77:77:2703:77:2749:-201.292,0,-197.155	0/1:73:38,35:38:1347:35:1256:-91.3701,0,-99.5543	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:72:72,0:72:2542:0:0:0,-21.6742,-229.031	0/1:28:15,13:15:527:13:468:-34.0308,0,-39.3313	0/1:73:36,37:36:1275:37:1332:-98.2072,0,-93.0771	0/1:52:29,23:29:1015:23:828:-59.1906,0,-76.0073	0/1:44:27,17:27:939:17:612:-42.0815,0,-71.5774	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/0:79:79,0:79:2775:0:0:0,-23.7814,-249.991	0/0:144:143,1:143:5099:1:36:0,-39.75,-455.457	0/1:82:36,46:36:1280:46:1648:-123.924,0,-90.8188	0/1:126:65,61:65:2315:61:2187:-159.165,0,-170.68	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.488	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:100:100,0:100:3546:0:0:0,-30.103,-319.35	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/1:16:7,9:7:248:9:320:-24.3259,0,-17.8477	0/1:83:56,27:56:1983:27:959:-61.6399,0,-153.758	0/1:20:12,8:12:424:8:280:-19.5187,0,-32.4758	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	0/1:73:44,29:44:1555:29:1044:-72.2996,0,-118.266	0/1:132:60,72:60:2121:72:2574:-192.174,0,-151.421	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:148:70,78:70:2492:78:2782:-206.068,0,-179.981	0/1:154:72,82:72:2584:82:2946:-219.014,0,-186.45	0/1:98:53,45:53:1887:45:1612:-115.869,0,-140.477	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:94:41,53:41:1444:53:1884:-141.542,0,-101.959	0/1:73:29,44:29:1007:44:1584:-120.876,0,-68.9648	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:46:46,0:46:1619:0:0:0,-13.8474,-145.998	0/1:81:43,38:43:1514:38:1360:-98.3172,0,-112.168	0/1:14:5,9:5:180:9:316:-24.5644,0,-12.3376	0/0:76:76,0:76:2701:0:0:0,-22.8783,-243.333	0/1:64:36,28:36:1284:28:999:-70.9586,0,-96.5975	0/0:90:90,0:90:3190:0:0:0,-27.0927,-287.325	0/0:97:97,0:97:3443:0:0:0,-29.1999,-310.085	0/1:136:73,63:73:2590:63:2249:-161.732,0,-192.409	0/1:110:49,61:49:1726:61:2188:-164.072,0,-122.51	0/0:16:16,0:16:560:0:0:0,-4.81648,-50.7287	0/0:82:81,1:81:2899:1:36:0,-21.0862,-257.547	0/1:49:26,23:26:936:23:828:-60.0936,0,-69.809	0/0:125:125,0:125:4424:0:0:0,-37.6287,-398.335	0/1:105:60,45:60:2136:45:1620:-114.482,0,-160.9	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555	0/1:78:49,29:49:1744:29:1031:-69.6223,0,-133.764	0/0:91:91,0:91:3251:0:0:0,-27.3937,-292.811	0/1:32:20,12:20:716:12:428:-29.2258,0,-55.1348	0/1:52:24,28:24:847:28:1004:-75.0223,0,-60.8952	0/0:76:76,0:76:2699:0:0:0,-22.8783,-243.155	0/0:49:49,0:49:1740:0:0:0,-14.7505,-156.884	0/1:152:78,74:78:2776:74:2660:-193.889,0,-204.326	0/1:42:14,28:14:492:28:998:-77.4916,0,-31.9691	0/0:54:54,0:54:1907:0:0:0,-16.2556,-171.907	0/0:91:91,0:91:3230:0:0:0,-27.3937,-290.923
chr09	10604205	.	TTGCTGCT	TTGCT,TTGTTGCT	118026	PASS	AB=0.478095,0.519057;ABP=18.3264,14.5143;AC=127,58;AF=0.682796,0.311828;AN=186;AO=3918,1900;CIGAR=1M3D4M,3M1X4M;DP=5854;DPB=4382.5;DPRA=0,0.990518;EPP=8502.16,4128.81;EPPR=24.725;GTI=1;LEN=3,1;MEANALT=1.92473,2.25806;MQM=59.9888,59.9816;MQMR=60;NS=93;NUMALT=2;ODDS=1.74692;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=135691,67072;QR=347;RO=10;RPL=3918,1900;RPP=8510.84,4128.81;RPPR=24.725;RPR=0,0;RUN=1,1;SAF=1,0;SAP=8502.16,4128.81;SAR=3917,1900;SRF=0;SRP=24.725;SRR=10;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:36:0,14,21:0:0:14,21:466,748:-98.6636,-60.964,-56.7496,-37.6834,0,-31.3618	1/1:49:0,48,1:0:0:48,1:1659,36:-149.232,-14.4494,0,-146.294,-11.1522,-145.993	1/1:123:0,123,0:0:0:123,0:4284,0:-385.743,-37.0267,0,-385.743,-37.0267,-385.743	1/1:99:0,96,0:0:0:96,0:3306,0:-297.399,-28.8989,0,-297.399,-28.8989,-297.399	1/2:19:0,9,10:0:0:9,10:301,356:-53.7309,-29.3709,-26.6617,-24.7044,0,-21.6941	1/2:25:0,13,11:0:0:13,11:441,392:-67.7009,-31.9492,-28.0358,-35.7415,0,-32.4302	1/1:82:0,81,0:0:0:81,0:2796,0:-251.52,-24.3834,0,-251.52,-24.3834,-251.52	1/2:61:0,24,37:0:0:24,37:845,1294:-174.41,-105.619,-98.3942,-69.1424,0,-58.0043	1/2:100:0,45,54:0:0:45,54:1566,1916:-283.446,-156.116,-142.57,-127.34,0,-111.085	1/2:72:0,39,33:0:0:39,33:1361,1165:-205.916,-95.221,-83.4808,-111.046,0,-101.112	1/2:45:0,18,27:0:0:18,27:625,968:-130.112,-79.3096,-73.891,-51.154,0,-43.0261	1/1:83:0,83,0:0:0:83,0:2939,0:-264.746,-24.9855,0,-264.746,-24.9855,-264.746	1/2:85:0,31,53:0:0:31,53:1091,1884:-242.338,-153.524,-144.192,-88.8072,0,-72.8526	1/2:63:0,34,28:0:0:34,28:1185,1008:-178.67,-82.3055,-72.0705,-96.4163,0,-87.9875	1/2:58:0,32,26:0:0:32,26:1132,932:-168.572,-76.3721,-66.7391,-92.5556,0,-84.7288	1/2:36:0,14,22:0:0:14,22:489,777:-103.402,-63.6277,-59.4133,-40.1245,0,-33.5018	1/2:65:0,33,32:0:0:33,32:1164,1129:-187.064,-92.2834,-82.3494,-95.133,0,-85.5	1/1:27:0,27,0:0:0:27,0:949,0:-85.7228,-8.12781,0,-85.7228,-8.12781,-85.7228	1/2:29:0,16,13:0:0:16,13:537,464:-81.6682,-38.1841,-33.3676,-43.8313,0,-39.9179	1/2:111:0,55,56:0:0:55,56:1903,1978:-316.07,-161.433,-144.877,-154.986,0,-138.128	1/2:110:0,49,60:0:0:49,60:1668,2118:-307.766,-172.464,-157.714,-135.289,0,-117.227	1/2:71:0,25,46:0:0:25,46:865,1610:-201.628,-131.338,-123.812,-70.6375,0,-56.7901	1/1:50:0,50,0:0:0:50,0:1712,0:-154.357,-15.0515,0,-154.357,-15.0515,-154.357	1/2:50:0,23,27:0:0:23,27:812,942:-143.088,-76.962,-70.0383,-66.4772,0,-58.3494	1/1:84:0,84,0:0:0:84,0:2886,0:-259.973,-25.2865,0,-259.973,-25.2865,-259.973	1/2:177:2,93,81:2:72:93,81:3175,2839:-482.192,-225.161,-203.04,-251.777,0,-233.269	1/1:157:0,157,0:0:0:157,0:5457,0:-491.269,-47.2617,0,-491.269,-47.2617,-491.269	1/2:33:0,13,20:0:0:13,20:445,712:-94.5005,-58.3861,-54.4727,-36.462,0,-30.4414	1/2:193:0,100,93:0:0:100,93:3499,3256:-549.932,-265.263,-235.16,-285.019,0,-257.023	1/2:69:0,33,35:0:0:33,35:1097,1256:-191.262,-102.517,-92.5834,-88.7971,0,-78.2611	1/2:43:0,29,14:0:0:29,14:957,504:-118.829,-41.4837,-32.7538,-77.6953,0,-73.4809	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:7:0,3,4:0:0:3,4:93,144:-19.5518,-12.1095,-11.2064,-7.77364,0,-6.56952	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/2:194:2,88,104:2:71:88,104:3057,3705:-544.117,-296.205,-275.499,-242.726,0,-217.204	1/2:107:1,64,42:1:35:64,42:2182,1485:-294.824,-118.102,-101.683,-174.174,0,-164.379	1/2:43:0,26,17:0:0:26,17:924,608:-125.229,-49.9345,-42.1077,-75.6509,0,-70.5334	.:.:.:.:.:.:.:.	1/1:43:0,43,0:0:0:43,0:1492,0:-134.57,-12.9443,0,-134.57,-12.9443,-134.57	1/2:38:0,23,15:0:0:23,15:781,536:-107.385,-44.0594,-37.1357,-63.6763,0,-59.1608	1/2:84:0,48,36:0:0:48,36:1648,1239:-234.775,-100.968,-86.5189,-134.15,0,-123.313	1/2:49:0,20,29:0:0:20,29:689,1029:-140.151,-84.1913,-78.1707,-56.3079,0,-47.5781	1/2:36:0,21,15:0:0:21,15:732,525:-102.593,-43.0626,-36.741,-59.8798,0,-55.3643	1/1:74:0,73,0:0:0:73,0:2551,0:-229.478,-21.9752,0,-229.478,-21.9752,-229.478	1/1:93:0,93,0:0:0:93,0:3148,0:-283.541,-27.9958,0,-283.541,-27.9958,-283.541	1/1:97:0,96,0:0:0:96,0:3319,0:-298.565,-28.8989,0,-298.565,-28.8989,-298.565	1/2:76:0,27,49:0:0:27,49:929,1669:-211.183,-135.736,-127.608,-75.7895,0,-61.039	1/2:35:0,18,17:0:0:18,17:580,604:-96.3172,-49.5731,-44.1546,-47.0832,0,-41.9656	1/1:53:0,52,0:0:0:52,0:1806,0:-162.458,-15.6536,0,-162.458,-15.6536,-162.458	1/2:5:0,4,1:0:0:4,1:136,36:-14.3128,-3.29724,-2.09312,-11.3714,0,-11.0704	1/1:59:0,59,0:0:0:59,0:2020,0:-182.067,-17.7608,0,-182.067,-17.7608,-182.067	1/1:33:0,33,0:0:0:33,0:1168,0:-105.427,-9.93399,0,-105.427,-9.93399,-105.427	1/2:7:0,3,4:0:0:3,4:104,144:-20.557,-12.1095,-11.2064,-8.79971,0,-7.59559	1/2:79:0,40,39:0:0:40,39:1360,1404:-225.216,-114.919,-102.878,-110.647,0,-98.9071	1/2:42:0,20,20:0:0:20,20:689,667:-109.928,-53.9607,-47.9401,-55.9493,0,-49.9287	1/2:5:0,1,4:0:0:1,4:32,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chr09	10674294	.	A	C	32675.6	PASS	AB=0.507282;ABP=4.87623;AC=55;AF=0.292553;AN=188;AO=2057;CIGAR=1X;DP=7054;DPB=7054;DPRA=0.948544;EPP=4461.05;EPPR=10838.7;GTI=1;LEN=1;MEANALT=1.01754;MQM=41.2504;MQMR=59.9886;NS=94;NUMALT=1;ODDS=2.46904;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73820;QR=178734;RO=4994;RPL=1;RPP=4461.05;RPPR=10838.7;RPR=2056;RUN=1;SAF=2057;SAP=4469.73;SAR=0;SRF=4994;SRP=10847.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:22,24:22:792:24:864:-61.5995,0,-57.7583	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:121:121,0:121:4329:0:0:0,-36.4246,-389.784	0/0:166:166,0:166:5925:0:0:0,-49.971,-533.359	0/1:75:39,36:39:1396:36:1296:-91.1882,0,-103.362	0/1:63:35,28:35:1256:28:1004:-67.4512,0,-94.3804	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/1:112:70,42:70:2500:42:1496:-96.2394,0,-191.538	0/1:53:33,20:33:1173:20:720:-46.523,0,-89.921	0/1:86:23,63:23:824:63:2256:-169.128,0,-48.5947	0/1:35:18,17:18:648:17:612:-43.4055,0,-48.1158	0/0:97:97,0:97:3460:0:0:0,-29.1999,-311.613	0/1:58:19,39:19:676:39:1404:-103.045,0,-43.7083	0/1:29:14,15:14:496:15:540:-37.0279,0,-36.2444	0/1:64:17,47:17:612:47:1692:-127.735,0,-36.1475	0/1:41:15,26:15:532:26:932:-70.0813,0,-35.8709	0/1:21:11,10:11:396:10:360:-25.268,0,-29.6611	0/0:21:20,1:20:720:1:36:0,-2.84093,-61.6481	0/1:21:12,9:12:432:9:324:-22.2201,0,-32.8996	0/1:128:76,52:76:2716:52:1872:-124.404,0,-206.152	0/1:96:44,52:44:1572:52:1872:-135.048,0,-112.873	0/1:103:59,44:59:2101:44:1572:-105.834,0,-158.352	0/0:114:114,0:114:4068:0:0:0,-34.3174,-366.303	0/1:30:10,20:10:360:20:716:-54.3021,0,-23.7134	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/1:158:86,70:86:3084:70:2508:-170.592,0,-230.467	0/0:165:165,0:165:5920:0:0:0,-49.6699,-532.907	0/1:27:10,17:10:356:17:612:-46.0957,0,-24.2534	0/1:191:102,89:102:3648:89:3176:-215.821,0,-271.028	0/1:153:90,63:90:3216:63:2264:-152.369,0,-243.605	0/1:80:38,42:38:1360:42:1508:-107.189,0,-98.6182	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:10:9,1:9:320:1:36:-0.510709,0,-26.1321	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:4,3:4:144:3:108:-7.63874,0,-11.2064	0/1:223:82,141:82:2924:141:5068:-371.72,0,-196.266	0/1:85:45,40:45:1616:40:1440:-99.3059,0,-120.142	0/1:44:18,26:18:644:26:936:-67.7098,0,-45.0453	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:131:130,0:130:4655:0:0:0,-39.1339,-418.751	0/1:35:10,25:10:356:25:900:-69.0387,0,-21.8452	0/1:150:99,51:99:3544:51:1836:-114.352,0,-274.014	0/1:49:19,30:19:676:30:1076:-79.8784,0,-46.4175	0/1:50:22,28:22:792:28:1000:-72.436,0,-56.4241	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/0:139:139,0:139:4956:0:0:0,-41.8432,-446.186	0/0:155:155,0:155:5532:0:0:0,-46.6596,-498.005	0/1:90:58,32:58:2080:32:1136:-70.7218,0,-160.378	0/1:54:32,22:32:1144:22:792:-52.2918,0,-87.0139	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:3:2,1:2:72:1:36:-2.57761,0,-5.93363	0/1:149:76,73:76:2732:73:2612:-184.744,0,-201.269	0/1:31:23,8:23:828:8:288:-16.2378,0,-65.5122	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:65:33,32:33:1176:32:1148:-81.2392,0,-86.5808	0/1:113:53,60:53:1892:60:2160:-154.411,0,-136.542	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:144:85,59:85:3052:59:2116:-140.106,0,-231.56	0/1:111:63,48:63:2264:48:1720:-116.718,0,-170.589	0/1:45:20,25:20:716:25:896:-65.0914,0,-51.2214	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:143:74,69:74:2633:69:2476:-171.717,0,-194.169	0/1:103:30,73:30:1080:73:2620:-197.295,0,-66.5072	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:33:12,21:12:432:21:752:-55.5144,0,-29.2872	0/1:15:4,11:4:144:11:396:-29.9661,0,-8.79817	0/0:116:115,1:115:4120:1:36:0,-31.5319,-367.597	0/1:49:26,23:26:928:23:828:-56.0567,0,-69.0878	0/0:137:137,0:137:4892:0:0:0,-41.2411,-440.434	0/0:130:130,0:130:4672:0:0:0,-39.1339,-420.639	0/1:90:49,41:49:1756:41:1468:-99.9958,0,-131.231	0/1:75:27,48:27:968:48:1720:-125.942,0,-64.8601	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/1:80:32,48:32:1148:48:1728:-123.539,0,-79.5474	0/0:197:197,0:197:7056:0:0:0,-59.3029,-635.101	0/1:68:30,38:30:1076:38:1364:-98.312,0,-76.6828	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:48:26,22:26:932:22:792:-55.1292,0,-69.7494	0/0:102:102,0:102:3644:0:0:0,-30.7051,-328.165	0/1:13:6,7:6:212:7:252:-18.2779,0,-15.5114	0/1:65:34,31:34:1220:31:1112:-75.7256,0,-90.5399	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:64:25,39:25:896:39:1404:-103.521,0,-61.6944	0/1:77:23,54:23:828:54:1932:-144.912,0,-51.6648	0/0:102:102,0:102:3629:0:0:0,-30.7051,-326.815	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168
chr09	10674359	.	G	A	88681.6	PASS	AB=0.620309;ABP=800.339;AC=58;AF=0.311828;AN=186;AO=3937;CIGAR=1X;DP=9020;DPB=9020;DPRA=1.5417;EPP=8552.1;EPPR=11040.6;GTI=6;LEN=1;MEANALT=1;MQM=53.6383;MQMR=58.5741;NS=93;NUMALT=1;ODDS=0.341536;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140006;QR=180291;RO=5083;RPL=1115;RPP=1610.16;RPPR=11014.6;RPR=2822;RUN=1;SAF=1115;SAP=1610.16;SAR=2822;SRF=3;SRP=11014.6;SRR=5080;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:22,8:22:784:8:288:-17.2365,0,-61.2405	0/0:105:105,0:105:3732:0:0:0,-31.6081,-336.008	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.541	0/0:83:83,0:83:2945:0:0:0,-24.9855,-264.961	0/1:55:25,30:25:896:30:1072:-80.2349,0,-64.3339	0/1:52:31,21:31:1089:21:752:-52.3527,0,-82.5921	0/0:107:107,0:107:3832:0:0:0,-32.2102,-344.55	0/1:147:76,71:76:2692:71:2532:-183.823,0,-198.109	0/1:65:36,29:36:1283:29:1019:-72.4543,0,-95.8878	0/1:156:33,123:33:1154:123:4359:-337.345,0,-57.1472	0/1:62:20,42:20:711:42:1491:-114.398,0,-45.5994	0/0:73:73,0:73:2580:0:0:0,-21.9752,-232.353	0/1:66:27,39:27:953:39:1383:-104.846,0,-66.2142	0/1:69:33,36:33:1138:36:1284:-95.0474,0,-81.9223	0/1:106:20,86:20:720:86:3048:-237.282,0,-33.2115	0/1:40:19,21:19:668:21:752:-55.8301,0,-48.3125	0/1:45:22,23:22:788:23:811:-59.7636,0,-57.6971	0/0:41:41,0:41:1455:0:0:0,-12.3422,-130.736	0/1:26:16,10:16:564:10:356:-24.4979,0,-42.7666	0/1:205:65,140:65:2323:140:4983:-382.05,0,-147.459	0/1:95:48,47:48:1703:47:1665:-121.425,0,-124.422	0/1:146:45,101:45:1612:101:3604:-275.369,0,-101.38	0/0:103:102,1:102:3617:1:36:0,-27.4083,-321.97	0/1:126:88,38:88:3136:38:1309:-80.1235,0,-244.278	0/0:58:58,0:58:2058:0:0:0,-17.4597,-185.423	0/1:382:160,222:160:5657:222:7872:-585.856,0,-393.646	0/0:151:151,0:151:5374:0:0:0,-45.4555,-483.578	0/1:38:20,18:20:707:18:629:-45.4946,0,-52.4704	0/1:289:111,178:111:3936:178:6277:-466.609,0,-266.925	0/1:119:72,47:72:2544:47:1675:-115.124,0,-192.587	0/1:148:28,120:28:983:120:4261:-334.664,0,-43.6238	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4605	0/1:12:9,3:9:320:3:108:-6.41637,0,-25.4847	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/1:374:88,286:88:3108:286:10134:-782.269,0,-167.125	0/1:190:109,81:109:3859:81:2890:-202.943,0,-290.241	0/1:62:22,40:22:776:40:1436:-110.445,0,-51.4983	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:112:112,0:112:3991:0:0:0,-33.7154,-359.29	0/1:35:11,24:11:362:24:864:-67.0549,0,-22.3598	0/1:135:76,59:76:2702:59:2103:-148.807,0,-202.694	0/1:122:41,81:41:1451:81:2889:-220.942,0,-94.081	0/1:113:34,79:34:1191:79:2815:-216.564,0,-73.3138	0/0:91:91,0:91:3227:0:0:0,-27.3937,-290.466	0/0:96:96,0:96:3387:0:0:0,-28.8989,-304.969	0/0:103:103,0:103:3664:0:0:0,-31.0061,-329.769	0/1:159:51,108:51:1804:108:3837:-292.984,0,-114.699	0/1:160:56,104:56:1980:104:3694:-281.762,0,-130.212	0/0:92:92,0:92:3263:0:0:0,-27.6948,-293.684	0/1:13:6,7:6:216:7:237:-17.7432,0,-15.8747	0/0:90:90,0:90:3186:0:0:0,-27.0927,-286.695	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8157	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:108:33,75:33:1165:75:2662:-207.194,0,-72.6213	0/1:80:42,38:42:1489:38:1343:-96.4847,0,-109.949	0/1:6:4,2:4:125:2:72:-5.02863,0,-9.75018	0/1:23:12,11:12:432:11:391:-28.5041,0,-32.2865	0/1:64:26,38:26:928:38:1356:-102.885,0,-64.5025	0/1:166:53,113:53:1878:113:4050:-308.549,0,-119.19	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4226	0/1:293:72,221:72:2504:221:7858:-611.715,0,-136.895	0/1:258:138,120:138:4907:120:4276:-302.072,0,-364.054	0/1:79:41,38:41:1459:38:1364:-99.2096,0,-107.712	0/0:43:43,0:43:1500:0:0:0,-12.9443,-134.966	0/1:200:75,125:75:2675:125:4460:-334.325,0,-180.579	0/1:154:31,123:31:1092:123:4368:-340.025,0,-52.2146	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.1041	0/0:67:67,0:67:2377:0:0:0,-20.169,-214.05	0/1:96:31,65:31:1108:65:2323:-177.608,0,-71.0489	0/1:28:6,22:6:212:22:792:-61.6341,0,-10.9485	0/0:113:113,0:113:3997:0:0:0,-34.0164,-359.834	0/1:42:14,28:14:500:28:995:-77.2208,0,-32.5924	0/0:145:144,1:144:5055:1:36:0,-40.1283,-450.292	0/0:98:98,0:98:3486:0:0:0,-29.5009,-313.556	0/1:82:44,38:44:1563:38:1350:-97.0782,0,-116.258	0/1:165:51,114:51:1796:114:4076:-317.247,0,-112.206	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:111:111,0:111:3959:0:0:0,-33.4143,-356.277	0/1:64:27,37:27:963:37:1332:-100.911,0,-67.7013	0/0:197:197,0:197:6990:0:0:0,-59.3029,-628.958	0/1:173:56,117:56:2004:117:4196:-321.363,0,-128.527	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.822	0/1:101:32,69:32:1148:69:2440:-187.458,0,-73.1906	0/0:140:139,1:139:4956:1:36:0,-38.5464,-441.431	0/1:41:15,26:15:536:26:914:-70.1607,0,-36.1789	0/1:61:24,37:24:852:37:1314:-99.934,0,-58.1654	0/0:63:63,0:63:2229:0:0:0,-18.9649,-200.801	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.4796	0/1:70:35,35:35:1256:35:1256:-92.2283,0,-92.03	0/1:138:20,118:20:712:118:4209:-331.464,0,-22.6246	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.807	0/0:84:84,0:84:2968:0:0:0,-25.2865,-267.227
chr09	10674364	.	TCA	CCG,CCA	160715	PASS	AB=0.465732,0.529468;ABP=56.1399,42.2998;AC=128,58;AF=0.688172,0.311828;AN=186;AO=5121,2766;CIGAR=1X1M1X,1X2M;DP=7925;DPB=7925;DPRA=0,1.31277;EPP=11123.1,6009.3;EPPR=7.35324;GTI=2;LEN=3,1;MEANALT=2.04301,2.38462;MQM=58.5768,58.628;MQMR=60;NS=93;NUMALT=2;ODDS=1.09092;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=178209,98202;QR=72;RO=2;RPL=0,0;RPP=11123.1,6009.3;RPPR=7.35324;RPR=5121,2766;RUN=1,1;SAF=0,0;SAP=11123.1,6009.3;SAR=5121,2766;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,22,8:0:0:22,8:751,275:-83.4021,-22.6752,-16.0526,-61.0695,0,-58.6613	1/1:107:0,107,0:0:0:107,0:3751,0:-337.714,-32.2102,0,-337.714,-32.2102,-337.714	1/1:74:0,72,1:0:0:72,1:2478,36:-222.769,-21.6742,0,-219.831,-18.6866,-219.53	1/1:83:0,82,1:0:0:82,1:2781,36:-249.907,-24.6845,0,-246.97,-21.3872,-246.669	1/2:56:0,25,31:0:0:25,31:841,1107:-158.723,-90.6073,-83.0816,-68.4607,0,-59.1288	1/2:52:0,31,21:0:0:31,21:1079,756:-149.717,-62.0456,-52.7137,-88.0268,0,-81.7052	1/1:107:0,106,0:0:0:106,0:3680,0:-330.575,-31.9092,0,-330.575,-31.9092,-330.575	1/2:147:0,76,71:0:0:76,71:2653,2525:-421.349,-206.055,-183.177,-215.646,0,-194.272	1/2:66:0,35,30:0:0:35,30:1214,1045:-183.641,-85.0004,-74.4643,-98.6664,0,-89.6355	1/2:94:0,34,60:0:0:34,60:1187,2131:-270.421,-173.93,-163.695,-96.8419,0,-78.7801	1/2:45:0,20,25:0:0:20,25:715,875:-129.764,-71.5128,-65.4922,-58.6047,0,-51.0789	1/1:73:0,73,0:0:0:73,0:2529,0:-227.781,-21.9752,0,-227.781,-21.9752,-227.781	1/2:65:0,28,37:0:0:28,37:968,1315:-186.085,-107.438,-99.0091,-78.9968,0,-67.8587	1/2:68:0,32,36:0:0:32,36:1071,1263:-189.827,-103.129,-93.4958,-87.0402,0,-76.2031	1/2:62:0,22,39:0:0:22,39:764,1379:-174.282,-112.182,-105.559,-62.0912,0,-50.3511	1/2:42:0,22,20:0:0:22,20:756,712:-119.582,-58.296,-51.6733,-61.6357,0,-55.6151	1/2:45:0,22,23:0:0:22,23:752,820:-128.222,-67.1988,-60.5762,-61.3716,0,-54.4479	1/1:41:0,41,0:0:0:41,0:1413,0:-126.952,-12.3422,0,-126.952,-12.3422,-126.952	1/2:26:0,16,10:0:0:16,10:532,356:-72.2847,-29.3144,-24.4979,-43.3166,0,-40.3063	1/2:153:0,66,87:0:0:66,87:2328,3103:-442.637,-253.22,-233.352,-189.771,0,-163.581	1/2:93:0,48,45:0:0:48,45:1647,1600:-264.211,-130.607,-116.158,-133.953,0,-120.407	1/2:100:0,45,55:0:0:45,55:1593,1964:-290.141,-160.421,-146.875,-130.074,0,-113.518	1/1:104:0,102,1:0:0:102,1:3547,36:-318.962,-30.7051,0,-316.025,-27.7665,-315.724	1/2:122:0,88,34:0:0:88,34:3093,1207:-350.178,-98.6553,-72.1647,-251.876,0,-241.641	1/1:60:0,60,0:0:0:60,0:2054,0:-185.074,-18.0618,0,-185.074,-18.0618,-185.074	1/2:318:0,165,152:0:0:165,152:5770,5408:-909.027,-440.126,-390.456,-468.893,0,-423.137	1/1:154:0,154,0:0:0:154,0:5399,0:-485.862,-46.3586,0,-485.862,-46.3586,-485.862	1/2:38:0,20,18:0:0:20,18:696,626:-107.795,-51.2448,-45.2242,-56.8974,0,-51.4789	1/2:200:0,109,90:0:0:109,90:3826,3206:-572.292,-261.219,-228.406,-311.067,0,-283.975	1/2:120:0,73,47:0:0:73,47:2533,1671:-341.849,-136.438,-114.463,-205.763,0,-191.614	1/2:108:0,28,80:0:0:28,80:985,2849:-312.377,-232.528,-224.099,-80.2013,0,-56.1189	1/1:5:0,5,0:0:0:5,0:180,0:-16.4605,-1.50515,0,-16.4605,-1.50515,-16.4605	1/2:12:0,9,3:0:0:9,3:318,108:-34.9752,-9.12564,-6.41637,-26.2063,0,-25.3032	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	.:.:.:.:.:.:.:.	1/2:229:1,89,139:1:36:89,139:3053,4876:-640.929,-393.572,-369.718,-244.706,0,-205.801	1/2:191:0,111,79:0:0:111,79:3910,2802:-546.446,-228.2,-194.786,-318.357,0,-294.576	1/2:62:0,22,40:0:0:22,40:769,1419:-178.435,-115.878,-109.255,-62.9078,0,-50.8666	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:112:0,112,0:0:0:112,0:3874,0:-348.785,-33.7154,0,-348.785,-33.7154,-348.785	1/2:34:0,11,23:0:0:11,23:371,824:-97.1274,-67.0679,-63.7566,-30.4026,0,-23.479	1/2:138:0,78,59:0:0:78,59:2726,2108:-393.537,-171.805,-148.324,-221.727,0,-203.966	1/2:91:0,42,49:0:0:42,49:1452,1722:-258.325,-140.446,-127.802,-118.227,0,-103.477	1/2:83:0,34,48:0:0:34,48:1172,1687:-232.302,-137.232,-126.997,-95.0581,0,-80.6086	1/1:90:0,89,0:0:0:89,0:3093,0:-278.132,-26.7917,0,-278.132,-26.7917,-278.132	1/1:98:0,97,0:0:0:97,0:3399,0:-305.74,-29.1999,0,-305.74,-29.1999,-305.74	1/1:107:0,107,0:0:0:107,0:3691,0:-332.217,-32.2102,0,-332.217,-32.2102,-332.217	1/2:127:0,52,75:0:0:52,75:1809,2657:-363.719,-216.707,-201.053,-147.363,0,-124.786	1/2:142:0,58,84:0:0:58,84:2023,2991:-408.398,-244.016,-226.557,-164.733,0,-139.447	1/1:92:0,90,1:0:0:90,1:3178,27:-285.742,-27.0927,0,-283.614,-25.0089,-283.313	1/2:13:0,6,7:0:0:6,7:203,252:-37.3635,-20.9189,-19.1127,-16.7928,0,-14.6856	1/1:90:0,89,0:0:0:89,0:3121,0:-280.61,-26.7917,0,-280.61,-26.7917,-280.61	1/1:26:0,26,0:0:0:26,0:915,0:-82.6436,-7.82678,0,-82.6436,-7.82678,-82.6436	1/2:5:0,4,1:0:0:4,1:142,36:-14.8635,-3.29724,-2.09312,-11.9251,0,-11.6241	1/2:108:0,33,75:0:0:33,75:1154,2688:-313.324,-219.468,-209.534,-94.2078,0,-71.6305	1/2:73:0,43,29:0:0:43,29:1478,1044:-204.951,-85.1734,-72.2291,-11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chr09	10674376	.	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chr09	11635761	.	A	C	25565.1	PASS	AB=0.518945;ABP=12.2251;AC=58;AF=0.308511;AN=188;AO=1543;CIGAR=1X;DP=5073;DPB=5073;DPRA=1.02307;EPP=3353.59;EPPR=7657.45;GTI=0;LEN=1;MEANALT=1;MQM=59.9883;MQMR=59.9955;NS=94;NUMALT=1;ODDS=3.01667;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54729;QR=126311;RO=3529;RPL=1542;RPP=3344.91;RPPR=7640.1;RPR=1;RUN=1;SAF=1542;SAP=3344.91;SAR=1;SRF=3527;SRP=7648.77;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:8,9:8:288:9:316:-23.6613,0,-21.1499	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:129:129,0:129:4619:0:0:0,-38.8329,-415.873	0/1:24:16,8:16:576:8:284:-18.6788,0,-44.9503	0/1:17:6,11:6:216:11:357:-27.3242,0,-14.673	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/1:74:37,37:37:1332:37:1320:-96.8257,0,-97.9062	0/1:22:4,18:4:144:18:648:-52.0292,0,-6.69096	0/1:37:19,18:19:680:18:644:-47.1525,0,-50.3911	0/1:47:25,22:25:892:22:777:-56.103,0,-66.4513	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:62:37,25:37:1317:25:896:-62.2965,0,-100.166	0/1:56:26,30:26:920:30:1036:-76.6885,0,-66.2594	0/1:41:22,19:22:792:19:680:-49.1869,0,-59.2634	0/1:46:18,28:18:648:28:996:-76.1075,0,-44.8045	0/1:34:15,19:15:540:19:669:-50.2979,0,-38.7015	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:25:15,10:15:540:10:357:-24.9463,0,-41.4108	0/1:58:27,31:27:972:31:1103:-82.1201,0,-70.3382	0/1:110:48,62:48:1716:62:2224:-167.311,0,-121.612	0/1:51:14,37:14:504:37:1315:-103.298,0,-30.3456	0/0:100:99,1:99:3536:1:36:0,-26.5047,-314.852	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:132:64,68:64:2277:68:2402:-176.7,0,-165.455	0/0:122:122,0:122:4357:0:0:0,-36.7257,-392.304	0/1:23:10,13:10:360:13:459:-34.7204,0,-25.8206	0/1:116:60,56:60:2147:56:2003:-145.623,0,-158.577	0/1:81:52,29:52:1868:29:1032:-68.81,0,-144.016	0/1:60:28,32:28:1008:32:1122:-83.223,0,-72.9746	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:143:75,68:75:2684:68:2427:-175.638,0,-198.758	0/1:87:41,46:41:1453:46:1643:-121.968,0,-104.874	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:24:12,12:12:432:12:405:-29.5483,0,-31.9965	0/1:56:31,25:31:1108:25:873:-62.0269,0,-83.1733	0/1:45:19,26:19:680:26:932:-70.6525,0,-47.9828	0/1:36:16,20:16:576:20:714:-53.7502,0,-41.3379	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.5	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:107:104,3:104:3685:3:108:0,-22.135,-321.777	0/1:52:23,29:23:824:29:1040:-78.2608,0,-58.8251	0/1:91:50,41:50:1792:41:1450:-103.4,0,-134.169	0/0:116:115,0:115:4140:0:0:0,-34.6184,-372.421	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	0/1:92:36,56:36:1296:56:1984:-151.137,0,-89.2492	0/1:28:11,17:11:396:17:604:-46.2618,0,-27.5539	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:20:12,8:12:428:8:284:-19.8828,0,-32.8382	0/1:35:15,20:15:536:20:702:-52.9671,0,-38.0388	0/1:81:47,34:47:1680:34:1216:-85.3631,0,-127.104	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:130:74,56:74:2660:56:1944:-136.094,0,-200.511	0/1:67:29,38:29:1032:38:1324:-99.2878,0,-73.0245	0/1:41:23,18:23:824:18:639:-45.496,0,-62.1411	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:65:31,34:31:1116:34:1202:-88.9173,0,-81.1847	0/1:84:19,65:19:684:65:2332:-184.853,0,-36.6038	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	0/1:37:20,17:20:720:17:608:-43.9139,0,-53.9907	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:56:28,28:28:1008:28:1000:-73.4577,0,-74.1787	0/0:89:88,1:88:3137:1:36:0,-23.1934,-278.955	0/0:109:108,1:108:3880:1:36:0,-29.214,-345.795	0/1:64:36,28:36:1288:28:984:-69.6047,0,-96.9577	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:55:20,35:20:716:35:1251:-96.3376,0,-48.2111	0/0:135:135,0:135:4817:0:0:0,-40.639,-433.685	0/1:47:26,21:26:921:21:740:-52.775,0,-69.0568	0/0:47:46,1:46:1648:1:32:0,-10.9491,-145.409	0/1:26:15,11:15:536:11:396:-28.156,0,-40.748	0/0:71:69,2:69:2463:2:72:0,-14.5364,-215.087	0/1:19:7,12:7:252:12:431:-33.4111,0,-17.3094	0/1:54:26,28:26:928:28:992:-73.3388,0,-67.5826	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.574	0/1:118:54,64:54:1936:64:2252:-167.42,0,-138.995	0/1:48:14,34:14:500:34:1216:-95.2971,0,-30.8867	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538
chr09	11822233	.	T	C	66231.3	PASS	AB=0.476251;ABP=18.3781;AC=128;AF=0.695652;AN=184;AO=3311;CIGAR=1X;DP=4961;DPB=4961;DPRA=0;EPP=7192.76;EPPR=3583.77;GTI=0;LEN=1;MEANALT=1.01087;MQM=59.9822;MQMR=59.9927;NS=92;NUMALT=1;ODDS=0.0749846;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118126;QR=59128;RO=1649;RPL=3311;RPP=7192.76;RPPR=3583.77;RPR=0;RUN=1;SAF=0;SAP=7192.76;SAR=3311;SRF=0;SRP=3583.77;SRR=1649;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	1/1:40:0,40:0:0:40:1419:-128.007,-12.0412,0	1/1:100:0,100:0:0:100:3548:-319.529,-30.103,0	1/1:72:0,72:0:0:72:2572:-231.503,-21.6742,0	0/1:40:22,18:22:788:18:640:-45.8881,0,-59.2036	0/1:44:17,27:17:612:27:964:-73.8315,0,-42.1681	1/1:82:0,82:0:0:82:2921:-263.124,-24.6845,0	0/1:68:55,13:55:1972:13:449:-20.2674,0,-157.285	0/1:44:28,16:28:1008:16:563:-37.7538,0,-77.791	0/1:66:34,32:34:1224:32:1148:-83.7619,0,-90.5991	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.2954	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:38:18,20:18:640:20:720:-53.6896,0,-46.4902	0/1:36:19,17:19:676:17:608:-44.2149,0,-50.3309	0/1:45:21,24:21:756:24:864:-64.5362,0,-54.8209	0/1:30:19,11:19:684:11:396:-26.9518,0,-52.8594	0/1:50:22,28:22:792:28:997:-74.9924,0,-56.5542	1/1:42:0,42:0:0:42:1499:-135.204,-12.6433,0	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	0/1:66:38,28:38:1368:28:1004:-70.8079,0,-103.553	0/1:78:32,46:32:1148:46:1640:-124.408,0,-80.1495	0/1:84:52,32:52:1864:32:1136:-77.2624,0,-142.753	1/1:61:0,61:0:0:61:2182:-196.646,-18.3628,0	0/1:56:23,33:23:828:33:1188:-90.3709,0,-57.9864	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:222:103,119:103:3685:119:4215:-312.702,0,-265.022	1/1:88:0,88:0:0:88:3144:-283.186,-26.4906,0	0/1:39:16,23:16:576:23:807:-61.209,0,-40.4348	0/1:115:64,51:64:2296:51:1786:-126.401,0,-172.283	0/1:32:15,17:15:540:17:604:-45.0576,0,-39.3036	0/1:51:27,23:27:972:23:828:-59.4328,0,-72.3866	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:184:95,89:95:3412:89:3171:-230.225,0,-251.904	0/1:83:42,41:42:1512:41:1449:-105.718,0,-111.389	0/1:41:18,23:18:640:23:824:-62.1411,0,-45.5871	.:.:.:.:.:.:.:.	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:33:11,22:11:396:22:788:-61.3108,0,-26.0488	0/1:96:66,30:66:2368:30:1052:-66.0699,0,-184.479	0/1:56:27,29:27:972:29:1044:-77.4171,0,-70.9379	0/1:55:20,35:20:716:35:1252:-96.4284,0,-48.2111	1/1:68:1,67:1:36:67:2378:-210.676,-16.8718,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:89:0,89:0:0:89:3176:-286.065,-26.7917,0	0/1:52:21,31:21:748:31:1103:-83.9262,0,-51.9917	0/1:53:32,21:32:1152:21:752:-52.0517,0,-88.0356	1/1:128:0,128:0:0:128:4588:-413.084,-38.5318,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:67:0,67:0:0:67:2407:-216.886,-20.169,0	1/1:10:0,10:0:0:10:348:-31.6551,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:44:25,19:25:885:19:680:-48.2838,0,-66.7212	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/1:12:2,10:2:72:10:356:-28.7689,0,-3.22436	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:55:31,24:31:1108:24:860:-61.1652,0,-83.4743	0/1:89:50,39:50:1796:39:1387:-98.3365,0,-135.131	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:83:43,40:43:1540:40:1413:-102.48,0,-113.908	0/1:88:47,41:47:1692:41:1472:-106.285,0,-126.076	0/1:45:19,26:19:684:26:920:-69.5707,0,-48.344	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:81:48,33:48:1701:33:1188:-82.8452,0,-128.991	0/1:65:48,17:48:1724:17:612:-35.8465,0,-135.878	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	0/1:47:21,26:21:756:26:932:-70.0505,0,-54.2188	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	1/1:69:0,69:0:0:69:2462:-221.834,-20.7711,0	0/1:34:14,20:14:504:20:708:-53.8092,0,-35.4631	1/1:61:1,60:1:32:60:2129:-188.677,-15.1635,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	0/1:62:40,22:40:1421:22:784:-52.2201,0,-109.522	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:47:29,18:29:1036:18:644:-44.1422,0,-79.4055	1/1:24:1,23:1:36:23:813:-69.8924,-3.62645,0	0/1:102:46,56:46:1652:56:2000:-149.569,0,-118.263	1/1:35:1,34:1:36:34:1216:-106.148,-6.93778,0	0/1:62:30,32:30:1080:32:1136:-83.885,0,-78.8494	1/1:138:2,136:2:72:136:4858:-430.537,-34.7054,0	0/1:29:18,11:18:636:11:392:-26.8902,0,-48.8382	0/1:67:35,32:35:1256:32:1144:-83.1005,0,-93.1763	1/1:38:0,38:0:0:38:1348:-121.62,-11.4391,0	1/1:20:0,20:0:0:20:705:-63.7737,-6.0206,0	0/1:63:34,29:34:1216:29:1042:-75.1252,0,-90.7817	0/1:60:40,20:40:1440:20:716:-46.7059,0,-111.836	1/1:42:0,42:0:0:42:1480:-133.493,-12.6433,0	1/1:83:1,82:1:36:82:2948:-261.955,-21.3872,0
chr09	11826706	.	C	G	45711.1	PASS	AB=0.493896;ABP=4.81297;AC=56;AF=0.297872;AN=188;AO=2757;CIGAR=1X;DP=8665;DPB=8665;DPRA=1.32915;EPP=5989.76;EPPR=12821.2;GTI=1;LEN=1;MEANALT=1;MQM=59.695;MQMR=59.9844;NS=94;NUMALT=1;ODDS=0.461309;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98022;QR=210725;RO=5903;RPL=0;RPP=5989.76;RPPR=12812.5;RPR=2757;RUN=1;SAF=0;SAP=5989.76;SAR=2757;SRF=1;SRP=12812.5;SRR=5902;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:12,4:12:424:4:144:-8.49714,0,-33.6799	0/0:115:115,0:115:4136:0:0:0,-34.6184,-372.422	0/0:132:132,0:132:4706:0:0:0,-39.736,-423.698	0/0:167:166,0:166:5919:0:0:0,-49.971,-532.456	0/1:85:39,46:39:1387:46:1640:-122.301,0,-99.5406	0/1:53:33,20:33:1166:20:701:-47.4571,0,-89.291	0/0:113:113,0:113:4048:0:0:0,-34.0164,-364.507	0/1:137:67,70:67:2408:70:2481:-182.232,0,-175.735	0/1:73:49,24:49:1748:24:860:-55.6613,0,-135.629	0/1:94:50,44:50:1779:44:1554:-111.825,0,-132.095	0/1:73:37,36:37:1319:36:1292:-94.5768,0,-97.036	0/0:78:78,0:78:2780:0:0:0,-23.4803,-250.439	0/1:49:22,27:22:784:27:960:-71.9658,0,-56.1334	0/1:131:62,69:62:2217:69:2448:-181.137,0,-160.358	0/1:45:22,23:22:788:23:819:-60.4852,0,-57.6984	0/1:51:27,24:27:972:24:860:-62.3409,0,-72.4454	0/1:110:64,46:64:2296:46:1648:-115.493,0,-173.788	0/0:43:42,1:42:1489:1:36:0,-9.34601,-130.704	0/1:26:15,11:15:531:11:392:-27.7933,0,-40.2951	0/1:195:122,73:122:4357:73:2593:-174.888,0,-333.603	0/1:88:32,56:32:1148:56:1993:-152.495,0,-77.1392	0/1:200:80,120:80:2847:120:4289:-325.867,0,-196.262	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.437	0/1:41:20,21:20:720:21:752:-55.664,0,-52.7865	0/0:69:69,0:69:2437:0:0:0,-20.7711,-219.582	0/1:281:145,136:145:5159:136:4808:-348.171,0,-379.859	0/0:132:131,0:131:4663:0:0:0,-39.4349,-419.618	0/1:26:13,13:13:468:13:464:-34.2707,0,-34.6329	0/1:267:129,138:129:4589:138:4931:-363.486,0,-332.798	0/1:235:130,105:130:4668:105:3758:-267.642,0,-349.538	0/1:96:40,56:40:1413:56:2012:-152.454,0,-98.5664	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:12:9,3:9:309:3:104:-6.09045,0,-24.5284	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/1:202:114,88:114:4081:88:3118:-219.981,0,-306.666	0/1:225:120,105:120:4283:105:3725:-267.635,0,-317.914	0/1:57:34,23:34:1220:23:796:-54.7678,0,-92.9481	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:133:133,0:133:4753:0:0:0,-40.037,-427.927	0/1:26:15,11:15:536:11:392:-27.7647,0,-40.748	0/1:165:95,70:95:3389:70:2512:-176.662,0,-255.554	0/1:67:32,35:32:1131:35:1237:-91.4624,0,-81.9287	0/1:62:30,32:30:1049:32:1124:-82.7976,0,-76.0543	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:110:110,0:110:3937:0:0:0,-33.1133,-354.52	0/0:225:222,3:222:7927:3:104:0,-58.0289,-702.972	0/1:117:41,76:41:1464:76:2724:-209.527,0,-96.8355	0/1:173:93,80:93:3340:80:2859:-205.441,0,-248.738	0/0:102:101,1:101:3605:1:36:0,-27.1068,-321.057	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:147:147,0:147:5264:0:0:0,-44.2514,-473.893	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:132:54,78:54:1932:78:2765:-209.299,0,-134.421	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:97:55,42:55:1972:42:1499:-105.976,0,-148.555	0/1:151:85,66:85:3027:66:2326:-164.142,0,-227.205	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:213:106,107:106:3785:107:3812:-279.035,0,-276.642	0/1:206:94,112:94:3365:112:3998:-297.94,0,-241.052	0/1:81:34,47:34:1216:47:1663:-125.573,0,-85.3631	0/0:106:106,0:106:3779:0:0:0,-31.9092,-340.31	0/1:88:37,51:37:1328:51:1819:-137.472,0,-93.3316	0/1:100:39,61:39:1389:61:2160:-164.534,0,-95.2039	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.786	0/1:109:58,51:58:2075:51:1815:-130.818,0,-154.208	0/1:20:13,7:13:468:7:252:-17.0074,0,-36.439	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/1:56:31,25:31:1112:25:877:-62.3823,0,-83.5337	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.876	0/0:119:119,0:119:4267:0:0:0,-35.8226,-384.207	0/1:209:92,117:92:3274:117:4146:-310.298,0,-231.962	0/0:112:112,0:112:4013:0:0:0,-33.7154,-361.357	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:104:104,0:104:3717:0:0:0,-31.3071,-334.73	0/1:155:68,87:68:2417:87:3087:-231.254,0,-171.125	0/0:168:165,0:165:5873:0:0:0,-49.6699,-528.321	0/1:121:65,56:65:2316:56:1988:-142.767,0,-172.276	0/0:61:61,0:61:2162:0:0:0,-18.3628,-194.843	0/1:70:36,34:36:1292:34:1189:-86.2293,0,-95.5117	0/0:135:134,1:134:4777:1:32:0,-37.4397,-426.188	0/1:46:27,19:27:953:19:680:-47.6818,0,-72.2359	0/1:64:37,27:37:1313:27:964:-67.81,0,-99.2038	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:92:53,39:53:1900:39:1366:-95.5422,0,-143.583	0/1:59:28,31:28:993:31:1094:-81.0066,0,-71.9217	0/0:70:70,0:70:2484:0:0:0,-21.0721,-223.812	0/0:91:91,0:91:3244:0:0:0,-27.3937,-292.183
chr09	11839828	.	G	A	275270	PASS	AB=0.503599;ABP=4.04203;AC=129;AF=0.68617;AN=188;AO=10469;CIGAR=1X;DP=15036;DPB=15036;DPRA=0;EPP=22727.5;EPPR=9909.27;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9698;MQMR=59.9952;NS=94;NUMALT=1;ODDS=0.221815;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=372947;QR=162862;RO=4562;RPL=5025;RPP=39.425;RPPR=10.095;RPR=5444;RUN=1;SAF=5026;SAP=39.0782;SAR=5443;SRF=2342;SRP=10.095;SRR=2220;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:28,33:28:1008:33:1176:-87.7849,0,-72.6735	1/1:271:2,269:2:68:269:9588:-856.418,-75.1214,0	1/1:235:0,235:0:0:235:8376:-753.847,-70.7421,0	1/1:254:1,253:1:36:253:9030:-809.078,-72.8633,0	0/1:84:50,34:50:1778:34:1220:-84.8203,0,-135.015	0/1:163:96,67:96:3422:67:2396:-166.829,0,-259.126	1/1:231:0,231:0:0:231:8279:-745.111,-69.5379,0	0/1:302:151,151:151:5380:151:5358:-391.441,0,-393.421	0/1:201:81,120:81:2899:120:4297:-326.37,0,-200.638	0/1:189:92,97:92:3287:97:3456:-254.357,0,-239.155	0/1:137:70,66:70:2499:66:2344:-169.958,0,-183.902	1/1:178:0,178:0:0:178:6339:-570.602,-53.5833,0	0/1:118:53,65:53:1886:65:2310:-172.639,0,-134.496	0/1:115:60,55:60:2144:55:1926:-138.994,0,-158.609	0/1:108:51,57:51:1816:57:2012:-148.84,0,-131.21	0/1:126:52,74:52:1864:74:2617:-197.847,0,-130.11	0/1:138:62,76:62:2211:76:2695:-201.252,0,-157.712	1/1:87:0,87:0:0:87:3086:-277.94,-26.1896,0	0/1:107:50,57:50:1792:57:2000:-148.059,0,-129.352	0/1:298:145,153:145:5195:153:5459:-401.73,0,-377.894	0/1:261:130,131:130:4609:131:4678:-342.595,0,-336.406	0/1:114:66,48:66:2360:48:1699:-118.878,0,-178.341	1/1:91:0,91:0:0:91:3244:-292.181,-27.3937,0	0/1:243:117,126:117:4174:126:4484:-330.579,0,-302.692	1/1:100:0,100:0:0:100:3556:-320.246,-30.103,0	0/1:442:209,233:209:7455:233:8304:-614.315,0,-537.939	1/1:395:2,393:2:72:393:14031:-1255.72,-112.07,0	0/1:69:39,30:39:1400:30:1068:-75.661,0,-105.528	0/1:328:143,185:143:5089:185:6625:-497.589,0,-359.417	0/1:173:83,90:83:2979:90:3216:-237.582,0,-216.263	0/1:231:124,107:124:4427:107:3832:-275.538,0,-329.064	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:20:8,12:8:288:12:424:-32.4758,0,-20.2468	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/1:34:12,22:12:413:22:792:-61.3707,0,-27.2628	0/1:384:186,198:186:6632:198:7050:-518.597,0,-481.364	0/1:122:58,64:58:2072:64:2288:-169.456,0,-150.025	0/1:149:72,77:72:2552:77:2755:-203.338,0,-185.076	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:239:0,239:0:0:239:8555:-769.944,-71.9462,0	0/1:53:27,26:27:968:26:924:-67.5185,0,-71.4828	0/1:285:166,117:166:5937:117:4179:-290.741,0,-448.885	0/1:177:87,90:87:3116:90:3197:-234.671,0,-227.384	0/1:142:68,74:68:2423:74:2633:-194.47,0,-175.579	1/1:191:1,190:1:36:190:6769:-605.685,-53.8985,0	1/1:227:0,227:0:0:227:8120:-730.815,-68.3338,0	1/1:189:0,189:0:0:189:6692:-602.271,-56.8947,0	0/1:120:43,77:43:1544:77:2751:-210.519,0,-103.129	0/1:209:94,115:94:3384:115:4128:-308.788,0,-241.859	1/1:240:2,238:2:72:238:8485:-756.814,-65.4105,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:217:0,217:0:0:217:7768:-699.151,-65.3235,0	1/1:84:1,83:1:36:83:2936:-260.875,-21.6882,0	0/1:17:10,7:10:360:7:243:-17.09,0,-27.6268	0/1:237:128,109:128:4533:109:3876:-277.69,0,-336.794	0/1:99:58,41:58:2080:41:1467:-102.523,0,-157.668	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/1:115:44,71:44:1557:71:2536:-193.871,0,-105.801	0/1:213:110,103:110:3943:103:3666:-266.025,0,-290.941	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:182:89,93:89:3166:93:3303:-242.7,0,-230.377	0/1:219:115,104:115:4094:104:3689:-266.284,0,-302.718	0/1:160:76,84:76:2696:84:2972:-219.549,0,-194.718	1/1:143:1,142:1:36:142:5042:-450.242,-39.449,0	0/1:252:117,135:117:4182:135:4803:-356.566,0,-300.702	0/1:225:160,65:160:5744:65:2302:-139.706,0,-449.342	1/1:54:0,54:0:0:54:1915:-172.627,-16.2556,0	1/1:146:0,146:0:0:146:5195:-467.683,-43.9504,0	0/1:164:82,81:82:2893:81:2850:-207.311,0,-211.179	0/1:49:28,21:28:996:21:752:-53.2558,0,-75.2044	1/1:137:0,137:0:0:137:4900:-441.152,-41.2411,0	0/1:112:47,65:47:1692:65:2325:-175.79,0,-118.851	1/1:299:0,299:0:0:299:10702:-963.077,-90.008,0	1/1:152:0,152:0:0:152:5450:-490.627,-45.7566,0	0/1:253:111,141:111:3975:141:5012:-375.009,0,-281.72	1/1:206:0,206:0:0:206:7325:-659.286,-62.0122,0	1/1:16:0,16:0:0:16:563:-50.9973,-4.81648,0	1/1:196:0,196:0:0:196:6966:-627.005,-59.0019,0	0/1:158:67,91:67:2395:91:3213:-241.828,0,-168.244	1/1:358:4,354:4:140:354:12622:-1122.86,-94.8242,0	0/1:166:72,94:72:2569:94:3347:-251.478,0,-181.487	1/1:90:0,90:0:0:90:3212:-289.304,-27.0927,0	0/1:172:89,83:89:3184:83:2953:-214.227,0,-235.007	1/1:253:2,251:2:72:251:8951:-798.729,-69.3239,0	0/1:76:40,36:40:1436:36:1288:-93.3453,0,-106.659	0/1:170:78,92:78:2796:92:3274:-243.705,0,-200.705	1/1:154:0,154:0:0:154:5464:-491.891,-46.3586,0	1/1:85:0,85:0:0:85:3000:-270.232,-25.5876,0	0/1:175:98,77:98:3468:77:2729:-193.172,0,-259.652	0/1:183:117,66:117:4200:66:2338:-155.589,0,-323.091	1/1:147:0,147:0:0:147:5219:-469.851,-44.2514,0	1/1:174:0,174:0:0:174:6184:-556.659,-52.3792,0
chr09	11839855	.	C	T	113891	PASS	AB=0.532102;ABP=44.6963;AC=129;AF=0.68617;AN=188;AO=5544;CIGAR=1X;DP=7728;DPB=7728;DPRA=0;EPP=12033;EPPR=4715.14;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9302;MQMR=59.9881;NS=94;NUMALT=1;ODDS=0.522563;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198547;QR=78024;RO=2182;RPL=5543;RPP=12033;RPPR=4706.48;RPR=1;RUN=1;SAF=0;SAP=12041.7;SAR=5544;SRF=1;SRP=4732.48;SRR=2181;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:19,22:19:684:22:792:-59.2634,0,-49.5481	1/1:113:0,113:0:0:113:4068:-366.304,-34.0164,0	1/1:161:0,161:0:0:161:5747:-517.346,-48.4658,0	1/1:141:0,141:0:0:141:5043:-454.015,-42.4452,0	0/1:42:29,13:29:1040:13:468:-29.8164,0,-81.2711	0/1:95:56,39:56:1989:39:1396:-97.3412,0,-150.685	1/1:146:0,146:0:0:146:5237:-471.463,-43.9504,0	0/1:142:57,85:57:2040:85:3044:-231.443,0,-141.126	0/1:134:53,81:53:1892:81:2897:-220.599,0,-130.22	0/1:101:48,53:48:1708:53:1900:-140.874,0,-123.602	0/1:56:29,27:29:1036:27:972:-70.9402,0,-76.6962	1/1:85:0,85:0:0:85:3052:-274.901,-25.5876,0	0/1:56:20,36:20:720:36:1292:-99.7261,0,-48.2711	0/1:40:15,25:15:540:25:900:-69.2798,0,-36.8953	0/1:52:23,29:23:828:29:1044:-78.6212,0,-59.1906	0/1:55:24,31:24:860:31:1102:-82.9336,0,-61.1652	0/1:62:26,36:26:917:36:1296:-98.2801,0,-64.1807	1/1:36:0,36:0:0:36:1292:-116.555,-10.8371,0	0/1:49:22,27:22:792:27:972:-73.0474,0,-56.8552	0/1:188:80,108:80:2859:108:3876:-292.44,0,-200.942	0/1:123:64,59:64:2271:59:2102:-152.403,0,-167.626	0/1:65:36,29:36:1288:29:1040:-74.3474,0,-96.6566	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	0/1:162:74,88:74:2644:88:3156:-235.498,0,-189.44	1/1:54:0,54:0:0:54:1917:-172.806,-16.2556,0	0/1:221:89,132:89:3175:132:4744:-360.588,0,-219.447	1/1:220:1,219:1:36:219:7837:-701.759,-62.6283,0	0/1:32:22,10:22:792:10:360:-23.1113,0,-61.9727	0/1:195:87,108:87:3096:108:3868:-289.612,0,-220.165	0/1:62:20,42:20:720:42:1504:-116.991,0,-46.4649	0/1:112:64,48:64:2283:48:1698:-119.388,0,-172.016	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:6,3:6:216:3:104:-6.94709,0,-17.0812	0/1:24:7,17:7:252:17:611:-48.0984,0,-15.8042	0/1:182:86,96:86:3080:96:3441:-255.068,0,-222.641	0/1:46:19,27:19:680:27:972:-73.9505,0,-47.6818	0/1:60:23,37:23:816:37:1324:-101.4,0,-55.6999	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:100:0,100:0:0:100:3566:-321.146,-30.103,0	0/1:27:15,12:15:540:12:421:-30.0953,0,-40.8087	0/1:165:96,69:96:3411:69:2472:-173.064,0,-257.536	0/1:100:51,49:51:1836:49:1764:-128.941,0,-135.418	0/1:59:31,28:31:1112:28:1008:-73.2756,0,-82.6306	1/1:119:0,119:0:0:119:4272:-384.657,-35.8226,0	1/1:126:0,126:0:0:126:4509:-405.976,-37.9298,0	1/1:123:0,123:0:0:123:4397:-395.892,-37.0267,0	0/1:80:23,57:23:820:57:2048:-160.509,0,-50.0401	0/1:73:23,50:23:824:50:1796:-139.947,0,-52.5081	1/1:136:0,136:0:0:136:4858:-437.373,-40.9401,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:99:0,99:0:0:99:3545:-319.257,-29.802,0	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:92:55,37:55:1955:37:1324:-91.7655,0,-148.53	0/1:84:48,36:48:1720:36:1296:-91.6574,0,-129.799	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:44:10,34:10:356:34:1201:-95.1488,0,-19.1359	0/1:93:48,45:48:1708:45:1620:-118.094,0,-126.01	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:111:48,63:48:1716:63:2260:-170.248,0,-121.311	0/1:94:39,55:39:1404:55:1976:-149.815,0,-98.3625	0/1:83:43,40:43:1548:40:1440:-104.912,0,-114.628	1/1:66:0,66:0:0:66:2342:-210.991,-19.868,0	0/1:147:68,79:68:2432:79:2828:-210.495,0,-174.884	0/1:94:59,35:59:2120:35:1249:-84.4146,0,-162.772	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:86:0,86:0:0:86:3073:-276.797,-25.8886,0	0/1:69:39,30:39:1388:30:1076:-76.3818,0,-104.448	0/1:30:18,12:18:648:12:432:-30.1903,0,-49.621	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	0/1:62:22,40:22:792:40:1428:-110.151,0,-52.9418	1/1:129:0,129:0:0:129:4611:-415.144,-38.8329,0	1/1:73:0,73:0:0:73:2620:-235.269,-21.9752,0	0/1:159:57,101:57:2029:101:3610:-277.151,0,-134.958	1/1:97:0,97:0:0:97:3461:-311.536,-29.1999,0	1/1:10:0,10:0:0:10:360:-32.7397,-3.0103,0	1/1:106:0,106:0:0:106:3807:-342.826,-31.9092,0	0/1:83:28,55:28:1000:55:1976:-153.129,0,-65.3299	1/1:186:2,184:2:72:184:6586:-585.984,-49.1549,0	0/1:77:31,46:31:1116:46:1648:-125.429,0,-77.5724	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:88:46,42:46:1656:42:1497:-108.533,0,-122.838	1/1:126:1,125:1:36:125:4482:-399.819,-34.3315,0	0/1:40:22,18:22:783:18:648:-46.6107,0,-58.7517	0/1:96:42,53:42:1508:53:1908:-143.04,0,-107.049	1/1:67:0,67:0:0:67:2408:-216.973,-20.169,0	1/1:39:1,38:1:36:38:1368:-119.823,-8.1419,0	0/1:57:33,24:33:1184:24:864:-60.9239,0,-89.7096	0/1:101:66,35:66:2372:35:1246:-82.0302,0,-183.334	1/1:100:0,100:0:0:100:3576:-322.048,-30.103,0	1/1:80:0,80:0:0:80:2857:-257.367,-24.0824,0
chr09	11956628	.	C	T	63030.2	PASS	AB=0.485518;ABP=11.501;AC=129;AF=0.68617;AN=188;AO=5435;CIGAR=1X;DP=7842;DPB=7842;DPRA=0;EPP=11520.1;EPPR=5130.29;GTI=1;LEN=1;MEANALT=1.02128;MQM=26.2537;MQMR=39.4748;NS=94;NUMALT=1;ODDS=0.883797;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194081;QR=86138;RO=2405;RPL=5402;RPP=11520.1;RPPR=5121.69;RPR=33;RUN=1;SAF=0;SAP=11805;SAR=5435;SRF=1;SRP=5216.72;SRR=2404;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:101:51,50:51:1832:50:1792:-73.3703,0,-120.222	1/1:70:0,70:0:0:70:2520:-148.463,-21.0721,0	1/1:174:0,174:0:0:174:6222:-365.929,-52.3792,0	1/1:147:0,147:0:0:147:5257:-357.986,-44.2514,0	0/1:77:35,42:35:1260:42:1497:-71.8109,0,-83.4448	0/1:81:37,44:37:1328:44:1580:-68.853,0,-85.1075	1/1:61:0,61:0:0:61:2166:-144.904,-18.3628,0	0/1:97:46,51:46:1648:51:1824:-79.0349,0,-105.285	0/1:226:109,117:109:3885:117:4165:-177.977,0,-250.8	0/1:35:14,21:14:504:21:756:-40.5095,0,-33.6688	0/1:28:14,14:14:496:14:504:-26.3209,0,-34.2581	1/1:63:1,62:1:36:62:2224:-128.851,-15.6187,0	0/1:41:22,19:22:788:19:676:-27.0612,0,-52.1614	0/1:36:16,20:16:576:20:716:-34.3131,0,-38.0453	0/1:39:18,21:18:644:21:756:-37.8206,0,-44.5299	0/1:37:24,13:24:851:13:468:-18.6261,0,-61.7828	0/1:31:22,9:22:792:9:320:-9.29822,0,-56.7213	1/1:35:0,35:0:0:35:1256:-73.2594,-10.5361,0	0/1:16:3,13:3:108:13:468:-20.9845,0,-3.90169	0/1:168:75,92:75:2692:92:3258:-171.152,0,-182.245	0/1:186:83,103:83:2984:103:3696:-179.896,0,-195.861	0/1:368:258,110:258:9226:110:3940:-169.338,0,-695.966	1/1:100:0,100:0:0:100:3562:-240.766,-30.103,0	0/1:55:26,29:26:932:29:1034:-46.5525,0,-62.3633	1/1:144:0,144:0:0:144:5153:-323.313,-43.3483,0	0/1:179:105,74:105:3780:74:2632:-136.001,0,-276.289	1/1:186:0,186:0:0:186:6630:-422.607,-55.9916,0	0/1:15:4,11:4:144:11:396:-20.3857,0,-8.15188	0/1:196:92,104:92:3300:104:3688:-209.702,0,-230.777	0/1:108:51,57:51:1832:57:2048:-95.5821,0,-121.876	0/1:67:43,24:43:1548:24:864:-37.533,0,-114.181	1/1:20:0,20:0:0:20:701:-43.3039,-6.0206,0	0/1:22:13,9:13:460:9:320:-14.4696,0,-31.9512	1/1:12:0,12:0:0:12:432:-25.8715,-3.61236,0	0/1:38:14,24:14:500:24:845:-38.7369,0,-30.6143	0/1:26:16,10:16:576:10:360:-13.7723,0,-39.1078	0/1:108:47,61:47:1692:61:2196:-125.003,0,-116.137	0/1:157:95,62:95:3404:62:2232:-94.6685,0,-240.092	0/1:31:14,17:14:504:17:612:-27.1444,0,-32.2818	0/1:5:4,1:4:144:1:36:-1.05356,0,-11.0905	1/1:80:0,80:0:0:80:2876:-182.551,-24.0824,0	0/1:26:15,11:15:540:11:392:-16.7441,0,-38.819	0/1:217:105,112:105:3756:112:4016:-189.509,0,-246.702	0/1:26:15,11:15:540:11:392:-19.1314,0,-38.4551	0/1:42:21,21:21:756:21:756:-38.1708,0,-53.4383	1/1:165:0,165:0:0:165:5905:-422.343,-49.67,0	1/1:117:0,117:0:0:117:4189:-244.469,-35.2205,0	1/1:166:4,162:4:140:162:5781:-378.406,-37.3997,0	0/1:111:61,50:61:2184:50:1784:-87.3214,0,-155.863	0/1:78:43,35:43:1529:35:1245:-59.587,0,-108.462	1/1:111:1,110:1:36:110:3933:-277.766,-29.8933,0	0/1:18:15,3:15:540:3:108:-2.24283,0,-41.2729	1/1:121:0,121:0:0:121:4348:-256.057,-36.4246,0	1/1:61:1,60:1:36:60:2141:-149.372,-15.0167,0	0/1:14:9,5:9:320:5:176:-6.66961,0,-22.4264	0/1:89:49,40:49:1760:40:1417:-60.8868,0,-121.801	0/1:22:14,8:14:504:8:284:-12.7725,0,-37.3694	0/1:12:5,7:5:180:7:252:-14.0408,0,-12.5843	0/1:20:11,9:11:396:9:305:-16.8993,0,-29.1162	0/1:78:26,52:26:905:52:1872:-95.4202,0,-54.0416	0/1:63:24,39:24:860:39:1392:-73.6561,0,-55.6922	1/1:15:0,15:0:0:15:535:-36.8781,-4.51545,0	0/1:154:76,78:76:2724:78:2750:-152.42,0,-193.077	0/1:175:77,97:77:2760:97:3467:-183.187,0,-185.928	0/1:83:43,40:43:1532:40:1428:-66.7435,0,-104.656	1/1:45:0,45:0:0:45:1586:-108.035,-13.5464,0	0/1:142:71,71:71:2522:71:2535:-127.572,0,-174.481	0/1:135:88,47:88:3148:47:1646:-74.159,0,-231.515	1/1:15:0,15:0:0:15:536:-34.7855,-4.51545,0	1/1:69:0,69:0:0:69:2442:-142.909,-20.7711,0	0/1:51:15,36:15:540:36:1296:-77.6838,0,-29.7106	0/1:18:6,12:6:212:12:432:-24.4061,0,-13.4208	1/1:217:1,216:1:36:216:7724:-444.751,-61.9774,0	0/1:56:28,28:28:1008:28:1008:-40.3452,0,-67.7095	1/1:114:0,114:0:0:114:4007:-251.669,-34.3174,0	1/1:108:0,108:0:0:108:3853:-258.672,-32.5112,0	0/1:142:61,81:61:2188:81:2892:-122.857,0,-137.091	1/1:49:0,49:0:0:49:1718:-102.812,-14.7505,0	1/1:18:0,18:0:0:18:648:-38.1682,-5.41854,0	1/1:83:1,82:1:36:82:2931:-184.213,-21.5619,0	0/1:81:46,35:46:1648:35:1233:-47.006,0,-111.714	1/1:268:0,268:0:0:268:9570:-644.515,-80.676,0	0/1:42:23,19:23:820:19:678:-33.6133,0,-59.1028	1/1:48:0,48:0:0:48:1724:-115.453,-14.4494,0	0/1:27:10,17:10:360:17:612:-33.3665,0,-23.4426	1/1:74:0,74:0:0:74:2645:-179.382,-22.2762,0	0/1:14:8,6:8:288:6:216:-8.84,0,-20.1212	0/1:53:20,33:20:720:33:1184:-54.2242,0,-44.2563	1/1:45:0,45:0:0:45:1603:-95.5018,-13.5464,0	1/1:29:0,29:0:0:29:1040:-66.08,-8.72987,0	0/1:63:38,25:38:1360:25:900:-37.1497,0,-97.6179	0/1:35:22,13:22:788:13:468:-21.7511,0,-58.2849	1/1:95:0,95:0:0:95:3396:-225.736,-28.5979,0	1/1:56:0,56:0:0:56:2012:-134.068,-16.8577,0
chr09	11984530	.	G	T	15219.8	PASS	AB=0.228977;ABP=5260.84;AC=54;AF=0.290323;AN=186;AO=1904;CIGAR=1X;DP=14310;DPB=14310;DPRA=1.0026;EPP=4137.49;EPPR=26924.9;GTI=13;LEN=1;MEANALT=1.01587;MQM=54.1402;MQMR=59.6505;NS=93;NUMALT=1;ODDS=1.94282;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67765;QR=441102;RO=12402;RPL=1904;RPP=4137.49;RPPR=26924.9;RPR=0;RUN=1;SAF=1904;SAP=4137.49;SAR=0;SRF=12402;SRP=26933.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:69:63,6:63:2222:6:208:0,-1.80299,-181.257	0/0:342:342,0:342:12136:0:0:0,-102.952,-1091.72	0/0:261:261,0:261:9322:0:0:0,-78.5688,-838.857	0/0:313:310,3:310:11066:3:108:0,-84.1545,-985.571	0/1:119:95,24:95:3404:24:852:-41.0242,0,-270.716	0/1:73:54,19:54:1918:19:670:-38.4922,0,-150.832	0/0:154:154,0:154:5484:0:0:0,-46.3586,-493.664	0/1:107:78,29:78:2792:29:1028:-60.0701,0,-219.244	0/1:103:79,24:79:2822:24:856:-46.1629,0,-221.909	0/1:128:97,31:97:3450:31:1084:-59.1277,0,-272.058	0/1:67:53,14:53:1849:14:504:-25.4801,0,-146.514	0/0:128:128,0:128:4450:0:0:0,-38.5318,-400.612	0/1:104:71,33:71:2504:33:1184:-75.0444,0,-194.279	0/1:85:60,25:60:2121:25:879:-53.1454,0,-165.56	0/1:107:83,24:83:2928:24:860:-45.4363,0,-231.483	0/1:89:70,19:70:2434:19:684:-34.604,0,-192.514	0/1:99:74,25:74:2591:25:893:-50.6394,0,-203.59	0/0:89:88,1:88:3101:1:36:0,-23.2024,-275.605	0/1:50:40,10:40:1420:10:356:-17.2524,0,-113.046	0/1:416:327,89:327:11688:89:3147:-157.807,0,-925.943	0/1:211:153,58:153:5445:58:2067:-122.162,0,-426.628	0/1:194:125,69:125:4428:69:2452:-161.759,0,-340.261	0/0:154:152,2:152:5432:2:72:0,-39.5244,-482.16	0/1:178:136,42:136:4833:42:1504:-81.8577,0,-381.469	0/0:133:133,0:133:4735:0:0:0,-40.037,-426.267	0/1:500:409,91:409:14571:91:3245:-141.603,0,-1159.7	0/0:300:300,0:300:10694:0:0:0,-90.309,-962.105	0/1:61:47,14:47:1676:14:500:-26.8898,0,-132.733	0/1:481:374,107:374:13329:107:3816:-198.374,0,-1052.74	0/1:270:229,41:229:8133:41:1455:-49.6148,0,-650.159	0/1:152:126,26:126:4475:26:928:-37.5924,0,-357.053	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6935	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:4,2:4:144:2:72:-4.82181,0,-11.5074	0/0:14:13,1:13:468:1:36:0,-0.647607,-38.8928	0/1:378:288,90:288:10207:90:3209:-174.601,0,-804.513	0/1:295:231,64:231:8242:64:2300:-116.702,0,-652.897	0/1:98:78,20:78:2736:20:705:-34.0826,0,-216.958	.:.:.:.:.:.:.:.	0/0:227:227,0:227:8098:0:0:0,-68.3338,-728.798	0/1:41:36,5:36:1267:5:180:-3.86348,0,-101.985	0/1:349:284,65:284:10142:65:2318:-101.728,0,-807.178	0/1:154:108,46:108:3801:46:1639:-101.023,0,-295.901	0/1:107:93,14:93:3231:14:482:-11.4384,0,-258.714	0/0:173:173,0:173:6135:0:0:0,-52.0782,-552.25	0/0:165:165,0:165:5892:0:0:0,-49.6699,-530.35	0/0:186:186,0:186:6635:0:0:0,-55.9916,-597.079	0/1:194:151,43:151:5365:43:1531:-79.2927,0,-424.311	0/1:160:125,35:125:4467:35:1252:-64.5064,0,-353.934	0/0:325:325,0:325:11556:0:0:0,-97.8347,-1039.54	0/1:6:5,1:5:180:1:21:-0.292739,0,-14.7459	0/0:207:206,0:206:7364:0:0:0,-62.0122,-662.411	0/0:60:58,1:58:2063:1:36:0,-14.5227,-181.784	0/1:28:23,5:23:815:5:180:-8.04416,0,-65.2234	0/1:187:130,57:130:4627:57:2035:-126.1,0,-360.207	0/1:45:27,18:27:964:18:644:-44.4071,0,-73.5082	0/1:6:5,1:5:180:1:36:-1.79109,0,-14.745	0/1:15:9,6:9:320:6:216:-15.2695,0,-24.6269	0/1:90:72,18:72:2584:18:634:-30.0422,0,-205.67	0/1:240:179,61:179:6385:61:2177:-123.649,0,-502.418	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:242:177,65:177:6264:65:2336:-137.298,0,-490.702	0/1:288:229,59:229:8140:59:2071:-99.5443,0,-645.86	0/1:85:71,14:71:2544:14:504:-20.035,0,-203.511	0/0:93:93,0:93:3285:0:0:0,-27.9958,-295.869	0/1:185:142,43:142:5066:43:1526:-81.3575,0,-400.274	0/1:174:138,36:138:4943:36:1280:-62.8914,0,-392.575	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:143:143,0:143:5094:0:0:0,-43.0473,-458.597	0/1:162:121,41:121:4282:41:1457:-82.5187,0,-336.672	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:217:217,0:217:7725:0:0:0,-65.3235,-695.013	0/1:116:94,22:94:3345:22:792:-36.5006,0,-266.285	0/0:173:172,0:172:6129:0:0:0,-51.7772,-551.33	0/0:312:311,1:311:11106:1:21:0,-91.8267,-997.25	0/1:151:111,40:111:3975:40:1419:-81.6082,0,-312.406	0/0:181:181,0:181:6480:0:0:0,-54.4864,-583.242	0/0:16:16,0:16:555:0:0:0,-4.81648,-50.276	0/0:233:232,1:232:8266:1:36:0,-66.6855,-740.425	0/1:117:95,22:95:3395:22:792:-36.2051,0,-270.175	0/0:443:443,0:443:15802:0:0:0,-133.356,-1421.44	0/1:174:131,43:131:4635:43:1539:-86.0534,0,-364.89	0/0:94:94,0:94:3335:0:0:0,-28.2968,-300.362	0/1:118:94,24:94:3352:24:856:-41.7079,0,-265.851	0/0:224:223,0:223:7922:0:0:0,-67.1297,-712.64	0/1:89:63,26:63:2244:26:927:-56.3858,0,-175.404	0/1:125:94,31:94:3326:31:1093:-60.8133,0,-261.904	0/0:144:144,0:144:5062:0:0:0,-43.3483,-455.724	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.835	0/1:92:74,18:74:2602:18:629:-28.6328,0,-206.695	0/1:130:92,38:92:3255:38:1360:-83.4532,0,-253.924	0/0:217:216,1:216:7739:1:36:0,-61.7252,-692.914	0/0:179:179,0:179:6334:0:0:0,-53.8844,-570.148
chr09	11984548	.	CCAA	TCAT,TCAA	273897	PASS	AB=0.529391,0.467441;ABP=109.593,133.807;AC=96,90;AF=0.516129,0.483871;AN=186;AO=7549,6642;CIGAR=1X2M1X,1X3M;DP=14236;DPB=14271.2;DPRA=0,77.3587;EPP=16395.5,14417.2;EPPR=11.6962;GTI=1;LEN=4,1;MEANALT=2.4086,2.42391;MQM=59.6772,58.0691;MQMR=60;NS=93;NUMALT=2;ODDS=3.51857;PAIRED=0,0;PAIREDR=0;PAO=54.5,54.5;PQA=1896.5,1896.5;PQR=0;PRO=32;QA=260372,235551;QR=139;RO=4;RPL=7549,6641;RPP=16395.5,14417.2;RPPR=11.6962;RPR=0,1;RUN=1,1;SAF=7549,6642;SAP=16395.5,14425.9;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:69:0,46,23:0:0:46,23:1576,812:-194.166,-66.2396,-52.3922,-128.275,0,-121.352	1/2:344:2,172,170:2:72:172,170:5869,6030:-960.748,-485.127,-439.225,-470.481,0,-425.181	1/2:256:0,159,94:0:0:159,94:5445,3353:-715.204,-273.311,-225.447,-441.868,0,-413.571	1/2:310:1,136,170:1:33:136,170:4721,6065:-874.333,-491.565,-453.293,-380.406,0,-331.899	1/2:116:0,71,45:0:0:71,45:2461,1607:-331.149,-131.167,-109.794,-200.266,0,-186.72	1/2:71:0,37,34:0:0:37,34:1280,1211:-202.726,-98.7884,-87.6503,-104.288,0,-94.0528	1/2:153:0,75,78:0:0:75,78:2577,2775:-435.62,-226.368,-203.79,-209.484,0,-186.004	1/2:104:0,47,57:0:0:47,57:1638,1994:-295.196,-161.998,-147.85,-133.488,0,-116.329	1/2:103:0,43,60:0:0:43,60:1458,2121:-290.911,-172.726,-159.782,-118.53,0,-100.468	1/2:121:0,73,48:0:0:73,48:2482,1707:-340.312,-139.009,-117.033,-201.593,0,-187.144	1/2:66:0,30,35:0:0:30,35:1013,1247:-183.875,-101.773,-92.7418,-82.2673,0,-71.7313	1/2:130:0,64,66:0:0:64,66:2186,2329:-367.109,-189.727,-170.461,-177.67,0,-157.802	1/2:99:0,39,60:0:0:39,60:1362,2148:-285.809,-175.041,-163.301,-111.12,0,-93.0587	1/2:88:0,36,52:0:0:36,52:1237,1851:-250.852,-150.648,-139.811,-100.472,0,-84.8187	1/2:109:0,57,52:0:0:57,52:1992,1860:-313.933,-151.938,-134.779,-162.348,0,-146.695	1/2:88:0,32,56:0:0:32,56:1100,1978:-250.502,-161.177,-151.544,-89.5438,0,-72.6861	1/2:102:0,51,51:0:0:51,51:1739,1809:-288.152,-147.331,-131.979,-141.168,0,-125.815	1/2:87:0,39,48:0:0:39,48:1337,1703:-247.526,-139.06,-127.32,-108.813,0,-94.3639	1/2:52:0,22,30:0:0:22,30:785,1080:-152.333,-88.339,-81.7163,-64.3519,0,-55.321	1/2:405:0,198,206:0:0:198,206:6889,7327:-1156.55,-596.506,-536.903,-560.121,0,-498.109	1/2:206:0,102,104:0:0:102,104:3520,3701:-587.271,-301.315,-270.61,-286.246,0,-254.939	1/2:190:0,91,98:0:0:91,98:3139,3491:-538.985,-283.995,-256.602,-254.98,0,-225.479	1/2:152:0,87,65:0:0:87,65:2943,2287:-424.96,-186.385,-160.195,-238.797,0,-219.23	1/2:188:0,98,90:0:0:98,90:3380,3195:-534.902,-260.411,-230.91,-274.84,0,-247.748	1/2:139:0,60,78:0:0:60,78:2078,2779:-395.443,-226.578,-208.516,-168.963,0,-145.483	1/2:498:0,263,234:0:0:263,234:9030,8284:-1407.03,-674.334,-595.163,-732.568,0,-662.127	1/2:304:0,166,137:0:0:166,137:5718,4853:-859.491,-395.173,-345.202,-464.396,0,-423.155	1/2:61:0,31,30:0:0:31,30:1096,1039:-173.956,-84.709,-75.3771,-89.5964,0,-80.5655	1/2:488:0,250,238:0:0:250,238:8691,8458:-1394.09,-688.846,-613.588,-705.414,0,-633.769	1/2:270:0,149,119:0:0:149,119:5136,4251:-763.229,-346.079,-301.226,-417.111,0,-381.289	1/2:150:0,93,57:0:0:93,57:3188,1995:-420.789,-162.014,-134.019,-258.945,0,-241.786	1/2:14:0,9,5:0:0:9,5:315,180:-40.6644,-15.0422,-12.333,-25.9784,0,-24.4733	1/1:17:0,16,1:0:0:16,1:556,36:-50.0065,-4.81648,0,-47.0684,-1.51924,-46.7673	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:6:0,3,3:0:0:3,3:102,108:-17.2341,-8.96701,-8.06392,-8.61329,0,-7.7102	1/1:12:0,11,1:0:0:11,1:389,36:-34.9886,-3.31133,0,-32.0506,-0.0140851,-31.7496	1/2:376:0,184,191:0:0:184,191:6375,6781:-1070.25,-552.425,-497.036,-518.047,0,-460.551	1/2:294:0,170,120:0:0:170,120:5849,4238:-819.314,-344.343,-293.168,-474.962,0,-438.838	1/2:98:0,52,45:0:0:52,45:1793,1608:-276.735,-131.084,-115.431,-145.835,0,-132.289	.:.:.:.:.:.:.:.	1/2:224:0,105,119:0:0:105,119:3626,4237:-640.124,-345.53,-313.922,-294.825,0,-259.003	1/2:42:0,21,21:0:0:21,21:728,734:-118.937,-59.7662,-53.4446,-59.5179,0,-53.1962	1/2:347:0,231,116:0:0:231,116:7929,4092:-975.87,-332.206,-262.668,-643.712,0,-608.792	1/2:148:0,67,81:0:0:67,81:2307,2884:-422.402,-235.034,-214.865,-187.592,0,-163.209	1/2:107:0,57,50:0:0:57,50:1913,1750:-297.487,-142.586,-125.427,-155.176,0,-140.124	1/2:167:0,96,69:0:0:96,69:3311,2421:-465.927,-196.962,-168.063,-268.906,0,-248.135	1/2:161:0,102,59:0:0:102,59:3504,2096:-455.637,-171.116,-140.411,-284.872,0,-267.111	1/2:181:0,87,92:0:0:87,92:3017,3246:-509.461,-264.265,-238.075,-245.167,0,-217.472	1/2:198:0,125,73:0:0:125,73:4329,2598:-563.17,-211.689,-174.061,-351.832,0,-329.857	1/2:158:0,94,63:0:0:94,63:3262,2242:-447.318,-182.243,-153.946,-264.949,0,-245.984	1/2:327:0,158,168:0:0:158,168:5465,5944:-928.152,-484.071,-436.508,-444.011,0,-393.438	1/2:7:0,3,4:0:0:3,4:108,140:-20.5282,-11.7405,-10.8374,-9.14271,0,-7.93859	1/2:205:0,114,91:0:0:114,91:3963,3245:-586.983,-264.788,-230.47,-322.489,0,-295.095	1/2:60:0,44,16:0:0:44,16:1496,572:-168.324,-46.9951,-33.7498,-121.681,0,-116.865	1/2:26:0,13,13:0:0:13,13:447,468:-74.7531,-38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chr09	11984582	.	TCCTTCTTCTTCTTCTTCA	TCCCTTCTTTTTCTTCA,TCCCTTCTTCTTCTTCTTCA,CCCTTCTTCTTCTTCTTCA	171578	PASS	AB=0.487741,0.483576,0.175547;ABP=17.0652,22.1982,6935.68;AC=92,65,29;AF=0.494624,0.349462,0.155914;AN=186;AO=5256,3962,1334;CIGAR=3M2D6M1X7M,1M1I18M,1X18M;DP=10777;DPB=10426.8;DPRA=47.3495,36.567,40.1323;EPP=11416.3,8606.38,2899.75;EPPR=20.3821;GTI=3;LEN=17,1,1;MEANALT=4.53846,4.79688,4.68254;MQM=31.9521,59.8228,59.8906;MQMR=60;NS=93;NUMALT=3;ODDS=0.707438;PAIRED=0,0,0;PAIREDR=0;PAO=0,0,0;PQA=0,0,0;PQR=0;PRO=0;QA=165429,138740,47219;QR=280;RO=8;RPL=1,0,0;RPP=11407.6,8606.38,2899.75;RPPR=20.3821;RPR=5255,3962,1334;RUN=1,1,1;SAF=1,0,0;SAP=11407.6,8606.38,2899.75;SAR=5255,3962,1334;SRF=0;SRP=20.3821;SRR=8;TYPE=complex,ins,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/3:30:0,19,0,11:0:0:19,0,11:566,0,388:-71.9691,-31.946,-26.2265,-71.9691,-31.946,-71.9691,-40.3446,0,-40.3446,-37.0332	1/3:224:0,135,0,83:0:0:135,0,83:4001,0,2946:-524.111,-240.112,-199.473,-524.111,-240.112,-524.111,-284.046,0,-284.046,-259.06	1/3:235:0,117,0,110:0:0:117,0,110:3438,0,3928:-563.898,-320.275,-285.055,-563.898,-320.275,-563.898,-243.615,0,-243.615,-210.502	1/2:307:0,162,137,3:0:0:162,137,3:5264,4833,104:-776.407,-393.535,-344.768,-382.85,0,-341.609,-767.954,-385.082,-374.396,-767.051	1/2:26:0,10,14,2:0:0:10,14,2:306,500,72:-62.6936,-40.7623,-37.752,-21.8934,0,-17.6789,-56.816,-34.8871,-16.0048,-56.2139	1/3:42:0,18,0,23:0:0:18,0,23:538,0,798:-102.948,-64.8536,-59.4351,-102.948,-64.8536,-102.948,-38.0422,0,-38.0422,-31.1185	1/2:203:0,99,101,2:0:0:99,101,2:3196,3532,72:-518.897,-287.321,-257.519,-231.539,0,-201.135,-513.022,-281.446,-225.663,-512.42	1/3:74:0,29,0,43:0:0:29,0,43:868,0,1531:-186.354,-124.848,-116.118,-186.354,-124.848,-186.354,-61.5244,0,-61.5244,-48.5801	1/3:78:0,29,0,44:0:0:29,0,44:845,0,1563:-187.22,-127.403,-118.673,-187.22,-127.403,-187.22,-59.8127,0,-59.8127,-46.5674	1/2:97:0,41,51,0:0:0:41,51,0:1341,1797,0:-243.8,-146.324,-133.982,-97.4724,0,-82.1199,-243.8,-146.324,-97.4724,-243.8	1/2:109:0,57,47,0:0:0:57,47,0:1862,1630,0:-268.622,-132.524,-115.365,-136.122,0,-121.973,-268.622,-132.524,-136.122,-268.622	1/3:131:0,53,0,77:0:0:53,0,77:1551,0,2737:-333.459,-223.18,-207.225,-333.459,-223.18,-333.459,-110.369,0,-110.369,-87.1902	1/3:71:0,33,0,35:0:0:33,0,35:970,0,1239:-169.987,-100.989,-91.0548,-169.987,-100.989,-169.987,-69.0201,0,-69.0201,-58.484	1/2:112:0,58,49,2:0:0:58,49,2:1765,1669,68:-261.354,-135.418,-117.958,-125.929,0,-111.179,-255.837,-129.902,-120.411,-255.235	1/2:71:1,35,33,0:1:36:35,33,0:1135,1159,0:-174.428,-91.4308,-83.8325,-80.3731,0,-73.3781,-174.729,-94.3686,-83.3121,-177.667	1/2:66:0,31,33,1:0:0:31,33,1:942,1148,36:-160.532,-93.369,-84.037,-67.158,0,-57.224,-157.593,-90.4311,-64.218,-157.292	1/3:87:0,38,0,49:0:0:38,0,49:1125,0,1730:-221.183,-141.231,-129.791,-221.183,-141.231,-221.183,-80.2575,0,-80.2575,-65.5071	1/3:91:0,53,0,37:0:0:53,0,37:1563,0,1283:-215.445,-104.378,-88.4235,-215.445,-104.378,-215.445,-111.138,0,-111.138,-100	1/3:96:0,31,0,61:0:0:31,0,61:924,0,2168:-242.223,-176.66,-167.328,-242.223,-176.66,-242.223,-65.5097,0,-65.5097,-47.1469	1/2:131:1,56,72,0:1:34:56,72,0:1820,2489,0:-331.591,-199.471,-185.371,-129.63,0,-110.715,-331.892,-202.229,-132.389,-334.651	1/2:97:0,44,49,2:0:0:44,49,2:1353,1724,63:-236.928,-140.35,-127.105,-96.5565,0,-81.806,-231.862,-135.285,-91.4889,-231.26	1/2:76:0,33,43,0:0:0:33,43,0:1128,1528,0:-208.37,-124.864,-114.93,-83.838,0,-70.8937,-208.37,-124.864,-83.838,-208.37	1/2:139:0,67,70,0:0:0:67,70,0:2170,2424,0:-354.627,-196.977,-176.808,-157.612,0,-136.54,-354.627,-196.977,-157.612,-354.627	1/2:86:0,48,35,2:0:0:48,35,2:1477,1235,72:-206.295,-100.604,-86.1547,-105.701,0,-95.1647,-200.419,-94.7287,-99.8227,-199.817	1/2:139:0,73,61,3:0:0:73,61,3:2236,2132,104:-333.215,-173.47,-151.495,-159.756,0,-141.393,-324.769,-165.025,-151.308,-323.866	1/2:257:0,134,114,1:0:0:134,114,1:4626,3970,32:-664.341,-322.834,-282.496,-341.536,0,-307.219,-661.763,-320.256,-338.958,-661.462	1/2:229:0,137,84,4:0:0:137,84,4:4166,2943,135:-537.78,-239.532,-198.291,-298.284,0,-272.997,-526.84,-228.594,-287.343,-525.636	1/2:42:1,25,15,0:1:36:25,15,0:769,532,0:-94.9646,-40.3974,-35.8093,-51.8989,0,-50.3238,-95.2657,-43.3351,-54.8392,-98.2043	1/2:258:2,113,136,1:2:69:113,136,1:3823,4806,36:-667.546,-385.831,-357.42,-276.735,0,-241.402,-665.211,-388.499,-279.404,-670.515	1/2:141:0,70,61,7:0:0:70,61,7:2144,2104,244:-323.804,-170.902,-149.83,-152.87,0,-134.508,-303.959,-151.058,-133.021,-301.851	1/2:93:0,33,58,0:0:0:33,58,0:1054,2035,0:-243.115,-165.671,-155.737,-77.4727,0,-60.013,-243.115,-165.671,-77.4727,-243.115	2/2:2:0,0,2,0:0:0:0,2,0:0,72,0:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0,-6.83672,-6.83672,-0.60206,-6.83672	1/2:8:0,5,2,1:0:0:5,2,1:156,68,36:-16.8934,-5.50247,-3.99732,-11.3675,0,-10.7654,-13.9488,-2.5584,-8.41802,-13.6478	1/3:14:0,8,0,6:0:0:8,0,6:240,0,212:-34.5969,-17.6186,-15.2104,-34.5969,-17.6186,-34.5969,-17.2958,0,-17.2958,-15.4896	1/3:7:0,3,0,4:0:0:3,0,4:90,0,144:-18.4553,-12.1091,-11.206,-18.455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chr09	11984629	.	GTTTCTTTTAA	GTTTCTTTTGA,GTCTTTTGA	296681	PASS	AB=0.664322,0.329606;ABP=3904.49,4198.13;AC=95,91;AF=0.510753,0.489247;AN=186;AO=11158,5500;CIGAR=9M1X1M,1M2D6M1X1M;DP=16761;DPB=15756.5;DPRA=45.5353,91.0815;EPP=24232.3,11946.1;EPPR=7.35324;GTI=10;LEN=1,9;MEANALT=2.98913,2.98913;MQM=59.7342,31.7118;MQMR=60;NS=93;NUMALT=2;ODDS=8787.16;PAIRED=0,0;PAIREDR=0;PAO=1.66667,1.66667;PQA=57.3333,57.3333;PQR=57.3333;PRO=1.66667;QA=399455,171886;QR=63;RO=2;RPL=11158,5500;RPP=24232.3,11946.1;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=24232.3,11946.1;SAR=11158,5500;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:67:0,47,20:0:0:47,20:1684,592:-179.516,-42.1112,-27.9628,-137.699,0,-131.678	1/2:227:0,84,142:0:0:84,142:3004,4190:-540.828,-295.847,-270.561,-244.971,0,-202.225	1/2:243:0,115,128:0:0:115,128:4120,3755:-602.176,-266.131,-231.513,-336.358,0,-297.827	1/2:330:0,155,174:0:0:155,174:5556,5592:-859.036,-405.905,-359.246,-453.105,0,-400.726	1/2:74:0,62,12:0:0:62,12:2228,362:-208.058,-26.2259,-7.56207,-182.12,0,-178.508	1/2:83:0,63,20:0:0:63,20:2256,596:-226.521,-42.4729,-23.508,-184.338,0,-178.317	1/2:220:0,114,106:0:0:114,106:4088,3381:-578.316,-245.087,-210.77,-333.552,0,-301.643	1/2:180:0,148,29:0:0:148,29:5289,853:-491.726,-60.4279,-15.8755,-431.327,0,-422.597	1/2:141:0,111,30:0:0:111,30:3962,892:-386.439,-63.3949,-29.9805,-323.33,0,-314.299	1/2:174:0,128,46:0:0:128,46:4576,1469:-480.135,-106.974,-68.4424,-373.47,0,-359.622	1/2:216:0,156,60:0:0:156,60:5585,1937:-596.443,-140.979,-94.0182,-455.776,0,-437.714	1/2:139:0,80,58:0:0:80,58:2855,1706:-353.647,-120.847,-96.7649,-232.745,0,-215.285	1/2:142:0,107,33:0:0:107,33:3848,978:-383.187,-69.2383,-37.0281,-313.943,0,-304.009	1/2:253:0,188,61:0:0:188,61:6735,1850:-681.136,-131.848,-75.2543,-549.299,0,-530.936	1/2:129:0,93,34:0:0:93,34:3348,1082:-351.623,-78.4041,-50.4083,-273.172,0,-262.937	1/2:117:0,81,35:0:0:81,35:2908,1071:-313.504,-76.2464,-51.8629,-237.15,0,-226.614	1/2:191:0,148,40:0:0:148,40:5307,1189:-517.211,-84.3052,-39.7527,-432.897,0,-420.856	1/2:118:0,60,58:0:0:60,58:2140,1704:-295.361,-120.873,-102.811,-174.798,0,-157.338	1/2:115:0,83,31:0:0:83,31:2984,917:-308.451,-64.9401,-39.9546,-243.445,0,-234.113	1/2:253:0,190,60:0:0:190,60:6782,1915:-692.134,-139.222,-82.0267,-552.863,0,-534.801	1/2:198:0,145,51:0:0:145,51:5192,1520:-532.23,-108.794,-65.1448,-423.444,0,-408.092	1/2:242:0,206,35:0:0:206,35:7353,1171:-685.895,-86.468,-24.4558,-599.385,0,-588.849	1/2:153:0,81,71:0:0:81,71:2904,2265:-401.091,-164.43,-140.046,-236.624,0,-215.251	1/2:203:0,156,47:0:0:156,47:5592,1456:-560.575,-104.445,-57.4844,-456.428,0,-442.279	1/2:158:0,69,87:0:0:69,87:2484,2606:-388.793,-186.104,-165.333,-202.651,0,-176.462	1/2:589:0,447,140:0:0:447,140:15997,4713:-1651.34,-347.528,-212.968,-1303.82,0,-1261.67	1/2:323:0,178,144:0:0:178,144:6369,4363:-831.046,-311.873,-258.29,-519.283,0,-475.935	1/2:91:0,64,27:0:0:64,27:2296,831:-246.96,-59.6295,-40.3636,-187.632,0,-179.504	1/2:515:0,396,117:0:0:396,117:14145,3934:-1442.02,-289.33,-170.122,-1152.65,0,-1117.43	1/2:270:0,192,74:0:0:192,74:6869,2214:-718.436,-158.267,-100.469,-560.171,0,-537.894	1/2:164:0,126,36:0:0:126,36:4516,1131:-450.451,-82.0992,-44.1694,-368.3,0,-357.463	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:12:0,8,4:0:0:8,4:269,114:-30.3096,-8.468,-6.05976,-22.1279,0,-20.9238	1/2:15:0,6,9:0:0:6,9:212,261:-36.1332,-18.8316,-17.0254,-17.6186,0,-14.9093	1/2:10:0,7,3:0:0:7,3:252,90:-27.2791,-6.65463,-4.54742,-20.9213,0,-20.0183	1/2:11:0,9,2:0:0:9,2:324,60:-31.0367,-4.5264,-1.81713,-26.7966,0,-26.1945	1/2:435:0,327,103:0:0:327,103:11729,3521:-1216.53,-259.883,-161.446,-956.631,0,-925.625	1/2:433:0,336,96:0:0:336,96:12048,2938:-1192.13,-209.712,-108.566,-982.379,0,-953.481	1/2:149:0,115,32:0:0:115,32:4136,947:-404.414,-67.0463,-32.4279,-337.3,0,-327.667	1/2:13:0,9,4:0:0:9,4:324,124:-35.6448,-9.15271,-6.44344,-26.7966,0,-25.5925	1/2:201:0,102,96:0:0:102,96:3636,2932:-506.049,-209.662,-178.957,-296.363,0,-267.465	1/2:82:1,57,23:1:27:57,23:2017,707:-212.351,-48.3161,-33.2857,-162.195,0,-157.398	1/2:177:0,131,46:0:0:131,46:4681,1411:-482.683,-100.966,-61.5309,-382.015,0,-368.168	1/2:166:0,115,47:0:0:115,47:4132,1474:-443.716,-106.591,-71.9725,-337.096,0,-322.947	1/2:123:1,98,23:1:36:98,23:3495,758:-336.739,-52.1164,-25.5552,-281.941,0,-277.954	1/2:151:0,86,64:0:0:86,64:3080,2173:-411.257,-160.073,-134.184,-251.235,0,-231.969	1/2:178:0,81,97:0:0:81,97:2888,2832:-436.059,-200.602,-176.219,-235.77,0,-206.57	1/2:350:0,166,184:0:0:166,184:5944,5939:-916.151,-431.447,-381.476,-485.032,0,-429.642	1/2:198:0,150,48:0:0:150,48:5383,1579:-553.899,-115.087,-69.9328,-439.125,0,-424.676	1/2:223:0,173,49:0:0:173,49:6186,1600:-620.509,-116.287,-64.2093,-504.174,0,-489.423	1/2:202:0,112,90:0:0:112,90:4012,3059:-552.959,-225.766,-192.051,-327.524,0,-300.432	1/2:11:0,7,4:0:0:7,4:248,131:-30.0785,-9.84358,-7.73637,-20.5537,0,-19.3495	1/2:337:0,153,183:0:0:153,183:5496,5358:-827.974,-379.601,-333.544,-448.477,0,-393.389	1/2:77:0,28,49:0:0:28,49:992,1671:-204.269,-123.498,-115.069,-81.1094,0,-66.3589	1/1:12:0,11,1:0:0:11,1:396,28:-35.7237,-3.31133,0,-33.7845,-1.11305,-33.4834	1/2:214:0,167,47:0:0:167,47:5984,1420:-589.73,-101.667,-51.3952,-488.354,0,-474.206	1/2:81:0,63,18:0:0:63,18:2268,564:-226.445,-41.3485,-22.3837,-185.4,0,-179.981	.:.:.:.:.:.:.:.	1/2:26:0,18,8:0:0:18,8:638,266:-71.6632,-19.9265,-14.508,-52.057,0,-49.6487	1/2:243:0,190,52:0:0:190,52:6804,1597:-669.272,-114.37,-57.174,-554.947,0,-539.293	1/2:316:0,235,79:0:0:235,79:8420,2544:-870.682,-184.245,-113.503,-686.401,0,-662.62	2/2:4:0,0,4:0:0:0,4:0,126:-10.5419,-10.5419,-10.5419,-1.20412,-1.20412,0	1/2:313:0,250,61:0:0:250,61:8936,2090:-882.169,-153.907,-78.6497,-728.226,0,-709.864	1/2:375:0,294,80:0:0:294,80:10485,2578:-1042.55,-187.819,-99.3162,-854.676,0,-830.594	1/2:149:0,116,32:0:0:116,32:4160,971:-408.613,-69.2453,-34.3258,-339.303,0,-329.67	1/2:168:0,82,85:0:0:82,85:2932,2720:-436.827,-197.732,-173.048,-239.061,0,-213.473	1/2:230:0,169,59:0:0:169,59:6034,1874:-627.906,-136.082,-85.2075,-491.875,0,-474.114	1/2:185:0,143,41:0:0:143,41:5109,1333:-513.201,-96.8717,-53.8244,-416.359,0,-404.016	1/2:105:0,51,54:0:0:51,54:1832,1626:-265.793,-116.302,-100.95,-149.756,0,-133.501	1/2:142:0,78,63:0:0:78,63:2800,1844:-359.235,-130.784,-107.303,-228.438,0,-209.473	1/2:245:0,183,60:0:0:183,60:6564,2024:-684.087,-148.814,-93.7259,-535.293,0,-517.231	1/2:46:0,37,9:0:0:37,9:1324,285:-129.056,-21.04,-9.90188,-108.319,0,-105.61	1/2:100:0,45,55:0:0:45,55:1612,1592:-244.256,-112.747,-99.2002,-131.824,0,-115.267	1/1:108:0,94,12:0:0:94,12:3349,346:-301.33,-28.2968,0,-276.82,-3.86126,-273.208	1/2:340:0,205,134:0:0:205,134:7366,4057:-890.949,-290.039,-228.327,-600.859,0,-560.521	1/2:245:0,100,144:0:0:100,144:3588,4666:-631.624,-338.943,-308.84,-292.655,0,-249.306	1/2:184:0,142,41:0:0:142,41:5073,1199:-498.718,-85.0488,-42.3026,-413.596,0,-401.254	1/2:161:0,85,76:0:0:85,76:3048,2232:-406.795,-158.143,-132.555,-248.961,0,-226.083	1/2:5:0,4,1:0:0:4,1:144,30:-14.2163,-2.39816,-1.19404,-12.1061,0,-11.805	1/2:207:0,120,87:0:0:120,87:4300,2660:-541.55,-190.847,-154.723,-351.015,0,-324.825	1/2:138:0,95,40:0:0:95,40:3366,1138:-354.387,-80.1203,-51.5225,-274.214,0,-262.172	1/2:355:0,196,156:0:0:196,156:7009,4957:-931.084,-359.584,-300.582,-571.526,0,-524.565	1/2:221:0,171,45:0:0:171,45:6136,1456:-605.784,-105.306,-53.8296,-500.446,0,-486.9	1/2:126:0,69,56:0:0:69,56:2476,1740:-327.811,-125.905,-105.134,-201.922,0,-185.065	1/2:160:0,118,42:0:0:118,42:4224,1363:-443.753,-99.3099,-63.7883,-344.755,0,-332.112	1/2:293:0,155,134:0:0:155,134:5568,4343:-769.767,-315.539,-268.879,-454.232,0,-413.894	1/2:72:0,55,16:0:0:55,16:1972,476:-194.509,-33.6052,-17.0485,-160.837,0,-156.02	1/2:171:0,129,40:0:0:129,40:4614,1168:-458.823,-82.547,-43.7141,-376.206,0,-364.165	1/2:150:0,81,69:0:0:81,69:2899,2043:-381.356,-144.911,-120.527,-236.754,0,-215.983	1/2:148:0,73,75:0:0:73,75:2616,2296:-377.394,-164.034,-142.059,-213.678,0,-191.101	1/2:367:0,287,78:0:0:287,78:10271,2392:-1008.37,-170.918,-84.5227,-837.398,0,-813.918	1/2:160:0,131,29:0:0:131,29:4702,927:-450.991,-67.6747,-28.2398,-383.62,0,-374.891	1/2:179:0,90,87:0:0:90,87:3212,2809:-465.714,-203.841,-176.749,-261.878,0,-235.688	1/2:143:0,75,68:0:0:75,68:2696,2192:-379.258,-159.305,-136.728,-220.278,0,-199.808
chr09	11996624	.	TCA	CCG,TCG	107805	PASS	AB=0.446077,0.549809;ABP=88.9561,76.342;AC=129,57;AF=0.693548,0.306452;AN=186;AO=3373,1899;CIGAR=1X1M1X,2M1X;DP=5300;DPB=5300;DPRA=2.7324,1.35772;EPP=7327.39,4126.64;EPPR=5.18177;GTI=3;LEN=3,1;MEANALT=1.91304,2.25;MQM=59.9606,59.9921;MQMR=60;NS=93;NUMALT=2;ODDS=0.955214;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=117572,67590;QR=36;RO=1;RPL=0,0;RPP=7327.39,4126.64;RPPR=5.18177;RPR=3373,1899;RUN=1,1;SAF=0,0;SAP=7327.39,4126.64;SAR=3373,1899;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	2/2:21:0,0,21:0:0:0,21:0,748:-67.6453,-67.6453,-67.6453,-6.32163,-6.32163,0	1/1:83:0,82,0:0:0:82,0:2902,0:-261.214,-24.6845,0,-261.214,-24.6845,-261.214	1/1:27:0,26,0:0:0:26,0:914,0:-82.2164,-7.82678,0,-82.2164,-7.82678,-82.2164	1/1:90:0,90,0:0:0:90,0:3137,0:-282.559,-27.0927,0,-282.559,-27.0927,-282.559	1/2:41:0,25,16:0:0:25,16:887,576:-119.624,-47.3585,-39.8328,-72.6235,0,-67.8071	1/2:45:0,13,32:0:0:13,32:439,1144:-129.211,-93.6366,-89.7232,-35.9179,0,-26.2849	1/1:97:0,94,1:0:0:94,1:3297,36:-296.636,-28.2968,0,-293.699,-25.3361,-293.398	1/2:75:0,29,46:0:0:29,46:1010,1629:-215.18,-133.049,-124.32,-82.4811,0,-68.6337	1/2:35:0,12,23:0:0:12,23:428,828:-102.809,-67.9204,-64.3081,-35.2467,0,-28.323	1/2:82:0,46,36:0:0:46,36:1618,1287:-237.002,-105.296,-91.4483,-132.061,0,-121.224	1/2:25:0,15,10:0:0:15,10:528,360:-72.7134,-29.734,-25.2186,-43.336,0,-40.3257	1/1:34:0,34,0:0:0:34,0:1188,0:-107.225,-10.235,0,-107.225,-10.235,-107.225	1/2:54:0,23,31:0:0:23,31:811,1086:-154.751,-88.7156,-81.7919,-66.3865,0,-57.0546	1/2:39:0,23,16:0:0:23,16:802,576:-112.578,-47.3585,-40.4348,-65.5744,0,-60.7579	1/2:17:0,11,6:0:0:11,6:380,201:-47.492,-16.6109,-13.2995,-31.2197,0,-29.4135	1/2:27:0,9,17:0:0:9,17:311,584:-72.8281,-47.5553,-44.846,-25.4003,0,-20.2828	1/2:25:0,13,12:0:0:13,12:460,424:-72.3526,-34.8841,-30.9707,-37.822,0,-34.2096	1/1:24:0,24,0:0:0:24,0:815,0:-73.6603,-7.22472,0,-73.6603,-7.22472,-73.6603	1/2:34:0,17,17:0:0:17,17:570,604:-95.4966,-49.5731,-44.4556,-46.2679,0,-41.1504	1/2:78:0,31,46:0:0:31,46:1105,1630:-222.844,-132.78,-123.448,-90.0598,0,-76.2125	1/2:125:0,48,76:0:0:48,76:1670,2736:-359.105,-223.323,-208.873,-135.853,0,-112.975	1/2:64:0,16,46:0:0:16,46:567,1651:-180.968,-134.777,-129.96,-46.2836,0,-32.4362	1/1:27:0,26,1:0:0:26,1:911,36:-81.9457,-7.82678,0,-79.0079,-4.52954,-78.7069	1/2:62:0,12,50:0:0:12,50:415,1792:-180.23,-146.511,-142.899,-34.0674,0,-19.0159	1/1:26:0,26,0:0:0:26,0:880,0:-79.5085,-7.82678,0,-79.5085,-7.82678,-79.5085	1/2:246:0,121,124:0:0:121,124:4212,4421:-702.862,-360.374,-323.95,-342.48,0,-305.152	1/1:135:0,135,0:0:0:135,0:4725,0:-425.415,-40.6391,0,-425.415,-40.6391,-425.415	1/2:18:0,10,8:0:0:10,8:356,288:-52.8723,-23.8592,-20.8489,-29.3712,0,-26.9629	1/2:147:0,55,91:0:0:55,91:1918,3232:-419.334,-263.348,-246.791,-155.977,0,-128.583	1/2:85:0,46,39:0:0:46,39:1603,1391:-244.095,-113.748,-99.9007,-130.7,0,-118.96	1/2:43:0,18,25:0:0:18,25:629,887:-123.786,-72.6224,-67.2038,-51.5155,0,-43.9897	1/1:7:0,7,0:0:0:7,0:243,0:-22.2075,-2.10721,0,-22.2075,-2.10721,-22.2075	1/2:11:0,2,9:0:0:2,9:72,320:-32.3087,-26.4331,-25.831,-6.23466,0,-3.52539	1/1:7:0,7,0:0:0:7,0:236,0:-21.5689,-2.10721,0,-21.5689,-2.10721,-21.5689	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:6:0,1,5:0:0:1,5:36,172:-17.2529,-14.3128,-14.0118,-3.29724,0,-1.79209	1/2:109:0,55,54:0:0:55,54:1838,1913:-304.982,-156.19,-139.633,-149.136,0,-132.881	1/2:109:0,51,58:0:0:51,58:1757,2068:-311.639,-168.931,-153.579,-143.057,0,-125.598	1/2:16:0,7,9:0:0:7,9:240,312:-45.1893,-25.7061,-23.5989,-19.8276,0,-17.1184	.:.:.:.:.:.:.:.	1/1:60:0,60,0:0:0:60,0:2057,0:-185.397,-18.0618,0,-185.397,-18.0618,-185.397	1/2:24:0,15,9:0:0:15,9:532,324:-70.1366,-26.7966,-22.2811,-43.6979,0,-40.9886	1/2:71:0,16,55:0:0:16,55:549,1948:-203.607,-159.037,-154.221,-44.9156,0,-28.359	1/2:48:0,19,29:0:0:19,29:676,1044:-140.636,-85.5449,-79.8254,-55.4489,0,-46.719	1/2:27:0,12,15:0:0:12,15:406,528:-76.2395,-43.3315,-39.7192,-33.2522,0,-28.7368	1/1:67:0,67,0:0:0:67,0:2338,0:-210.678,-20.169,0,-210.678,-20.169,-210.678	1/1:41:0,41,0:0:0:41,0:1442,0:-130.074,-12.3422,0,-130.074,-12.3422,-130.074	1/1:101:0,99,1:0:0:99,1:3447,36:-310.085,-29.802,0,-307.148,-26.8646,-306.847	1/2:81:0,29,51:0:0:29,51:1030,1832:-233.375,-149.448,-140.719,-83.9229,0,-68.5703	1/2:118:0,60,58:0:0:60,58:2089,2068:-338.795,-168.931,-150.869,-170.216,0,-152.757	1/1:120:0,119,0:0:0:119,0:4125,0:-371.079,-35.8226,0,-371.079,-35.8226,-371.079	1/2:10:0,9,1:0:0:9,1:320,36:-29.3712,-3.29724,-0.587975,-26.4333,0,-26.1323	1/1:62:0,61,0:0:0:61,0:2160,0:-194.307,-18.3628,0,-194.307,-18.3628,-194.307	1/1:15:0,15,0:0:0:15,0:524,0:-47.4893,-4.51545,0,-47.4893,-4.51545,-47.4893	1/2:18:0,10,8:0:0:10,8:346,288:-51.9684,-23.8592,-20.8489,-28.4629,0,-26.0546	1/2:60:0,32,28:0:0:32,28:1124,995:-172.915,-81.4352,-71.8022,-91.8334,0,-83.4046	1/2:40:0,12,28:0:0:12,28:411,1004:-115.605,-82.247,-78.6347,-33.7052,0,-25.2764	1/1:6:0,6,0:0:0:6,0:211,0:-19.3335,-1.80618,0,-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chr09	12341178	.	T	C	42790	PASS	AB=0.513906;ABP=11.3443;AC=59;AF=0.31383;AN=188;AO=2559;CIGAR=1X;DP=8617;DPB=8617;DPRA=1.10598;EPP=5559.81;EPPR=13136.1;GTI=1;LEN=1;MEANALT=1.07576;MQM=59.9945;MQMR=59.9993;NS=94;NUMALT=1;ODDS=4.13562;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90792;QR=215654;RO=6052;RPL=0;RPP=5559.81;RPPR=13144.8;RPR=2559;RUN=1;SAF=0;SAP=5559.81;SAR=2559;SRF=1;SRP=13136.1;SRR=6051;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:23,30:23:828:30:1072:-80.8379,0,-58.8895	0/0:93:93,0:93:3276:0:0:0,-27.9958,-295.059	0/0:150:150,0:150:5336:0:0:0,-45.1545,-480.375	0/0:172:171,1:171:6085:1:36:0,-48.1789,-544.156	0/1:67:36,31:36:1292:31:1094:-78.5993,0,-96.4148	0/1:50:22,28:22:792:28:1004:-75.624,0,-56.5542	0/0:87:87,0:87:3078:0:0:0,-26.1896,-277.25	0/1:168:84,84:84:2995:84:2954:-215.52,0,-219.209	0/1:180:85,95:85:3032:95:3355:-247.982,0,-218.926	0/1:52:31,21:31:1112:21:756:-52.7137,0,-84.7378	0/1:40:20,20:20:712:20:716:-52.7265,0,-52.3655	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:44:24,20:24:864:20:700:-50.0782,0,-64.8372	0/1:112:65,47:65:2310:47:1659:-115.881,0,-174.444	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7641	0/1:44:21,23:21:752:23:820:-60.8772,0,-54.7609	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:18:13,5:13:456:5:176:-10.7665,0,-35.9547	0/1:199:102,97:102:3643:97:3449:-250.718,0,-268.17	0/1:136:62,72:62:2220:72:2556:-189.591,0,-159.367	0/1:140:43,97:43:1523:97:3459:-269.379,0,-95.2182	0/0:140:140,0:140:4992:0:0:0,-42.1442,-449.428	0/1:54:33,21:33:1180:21:744:-51.0287,0,-90.2524	0/0:64:63,1:63:2228:1:32:0,-16.0666,-197.586	0/1:209:109,100:109:3863:100:3524:-254.454,0,-284.948	0/0:204:204,0:204:7267:0:0:0,-61.4101,-654.084	0/1:15:13,2:13:460:2:72:-2.32127,0,-37.2199	0/1:264:139,125:139:4934:125:4449:-321.11,0,-364.739	0/1:203:109,93:109:3875:93:3312:-237.132,0,-287.779	0/1:106:54,52:54:1923:52:1841:-134.059,0,-141.437	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/1:22:8,14:8:284:14:499:-38.6231,0,-19.2807	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:10:4,6:4:140:6:212:-16.4145,0,-9.93428	0/1:23:7,16:7:252:16:572:-44.8897,0,-16.1053	0/1:127:60,67:60:2143:67:2387:-176.856,0,-154.906	0/1:182:86,96:86:3075:96:3404:-251.782,0,-222.191	0/1:43:20,23:20:716:23:808:-60.0958,0,-51.8234	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:138:138,0:138:4940:0:0:0,-41.5421,-444.75	0/1:22:9,13:9:320:13:464:-35.4748,0,-22.5197	0/1:209:92,117:92:3277:117:4188:-314.186,0,-232.234	0/1:37:21,15:21:748:15:536:-37.3781,0,-56.4486	0/1:40:23,16:23:820:16:576:-40.075,0,-62.0227	0/0:117:117,0:117:4169:0:0:0,-35.2205,-375.393	0/0:158:158,0:158:5660:0:0:0,-47.5627,-509.519	0/0:141:139,2:139:4945:2:72:0,-35.6085,-438.365	0/1:80:42,38:42:1504:38:1332:-96.0946,0,-111.572	0/1:136:61,75:61:2175:75:2667:-199.336,0,-155.076	0/0:121:120,1:120:4257:1:36:0,-32.8264,-379.71	0/1:28:18,10:18:636:10:356:-23.9524,0,-49.1392	0/0:155:155,0:155:5525:0:0:0,-46.6596,-497.376	0/0:77:77,0:77:2733:0:0:0,-23.1793,-246.212	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/1:156:65,91:65:2293:91:3222:-243.242,0,-159.67	0/1:36:17,19:17:612:19:654:-48.343,0,-44.5764	0/1:14:8,6:8:276:6:208:-14.8447,0,-20.9608	0/1:19:5,14:5:165:14:491:-38.8015,0,-9.45403	0/1:101:44,57:44:1584:57:2032:-152.748,0,-112.447	0/1:78:48,30:48:1705:30:1059:-72.1401,0,-130.254	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:170:76,94:76:2732:94:3330:-248.742,0,-194.947	0/1:180:82,98:82:2939:98:3494:-260.486,0,-210.558	0/1:54:29,25:29:1036:25:866:-61.9958,0,-77.2983	0/0:85:85,0:85:3003:0:0:0,-25.5875,-270.498	0/1:146:59,87:59:2104:87:3061:-231.771,0,-145.679	0/1:160:55,105:55:1976:105:3748:-289.356,0,-129.95	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/1:35:24,11:24:860:11:396:-25.4467,0,-67.1858	0/1:25:15,10:15:536:10:356:-24.8555,0,-41.0491	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/1:63:36,27:36:1277:27:964:-68.1119,0,-96.2662	0/0:535:533,2:533:19055:2:68:0,-154.593,-1708.05	0/0:158:158,0:158:5622:0:0:0,-47.5627,-506.102	0/1:131:66,65:66:2368:65:2294:-167.286,0,-173.943	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.04	0/0:22:21,1:21:756:1:32:0,-3.42335,-65.1679	0/0:75:75,0:75:2663:0:0:0,-22.5772,-239.916	0/1:139:78,61:78:2787:61:2172:-153.904,0,-209.227	0/0:211:209,1:209:7382:1:32:0,-60.2819,-661.29	0/1:44:22,22:22:792:22:779:-57.1867,0,-58.3604	0/0:49:49,0:49:1729:0:0:0,-14.7505,-155.893	0/1:27:12,15:12:428:15:521:-39.0885,0,-30.731	0/0:96:96,0:96:3431:0:0:0,-28.8989,-309.003	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:48:28,20:28:985:20:711:-49.8662,0,-74.5121	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:99:47,52:47:1667:52:1852:-137.158,0,-120.515	0/1:34:6,28:6:212:28:981:-78.366,0,-9.18978	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.555
chr09	12971351	.	C	T	25749.5	PASS	AB=0.504313;ABP=3.49733;AC=59;AF=0.31383;AN=188;AO=1524;CIGAR=1X;DP=4731;DPB=4731;DPRA=1.09238;EPP=3286.33;EPPR=6930.03;GTI=1;LEN=1;MEANALT=1.05085;MQM=59.9987;MQMR=59.9947;NS=94;NUMALT=1;ODDS=0.587812;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54555;QR=114360;RO=3202;RPL=3;RPP=3286.33;RPPR=6930.03;RPR=1521;RUN=1;SAF=1524;SAP=3312.33;SAR=0;SRF=3202;SRP=6956.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:4,9:4:140:9:311:-24.4103,0,-9.03119	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:100:99,0:99:3560:0:0:0,-29.802,-320.247	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:29:17,12:17:612:12:432:-30.4913,0,-46.6836	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/1:67:28,39:28:995:39:1381:-104.418,0,-69.695	0/1:64:31,33:31:1104:33:1188:-87.9627,0,-80.4047	0/1:66:30,36:30:1076:36:1277:-95.3631,0,-77.2849	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/1:43:17,26:17:604:26:936:-71.6152,0,-41.7463	0/1:48:22,26:22:780:26:936:-70.11,0,-56.0736	0/1:36:17,19:17:608:19:680:-50.6921,0,-44.2149	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/1:85:37,48:37:1319:48:1724:-129.858,0,-93.4236	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:67:41,26:41:1468:26:932:-64.0299,0,-112.247	0/1:69:40,29:40:1432:29:1036:-72.7828,0,-108.407	0/1:61:18,43:18:648:43:1532:-119.81,0,-40.2891	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:70:42,28:42:1508:28:996:-68.8828,0,-114.943	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:148:68,80:68:2415:80:2864:-213.445,0,-173.054	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/1:24:14,10:14:492:10:360:-25.5196,0,-37.3876	0/1:87:43,44:43:1528:44:1572:-115.582,0,-111.623	0/1:80:43,37:43:1548:37:1312:-94.298,0,-115.531	0/1:103:58,44:58:2067:44:1572:-110.706,0,-155.235	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:6,1:6:207:1:36:-1.49107,0,-16.8597	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:146:73,73:73:2595:73:2616:-191.737,0,-189.849	0/1:92:45,46:45:1612:46:1652:-121.215,0,-117.617	0/1:37:22,15:22:784:15:540:-37.7984,0,-59.7458	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:66:66,0:66:2338:0:0:0,-19.868,-210.679	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:37:17,20:17:608:20:716:-53.6296,0,-43.9139	0/1:55:23,32:23:820:32:1152:-87.4335,0,-57.5659	0/1:44:20,24:20:708:24:864:-64.8372,0,-50.8003	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:77:77,0:77:2739:0:0:0,-23.1793,-246.753	0/1:80:45,35:45:1607:35:1256:-89.2629,0,-120.837	0/1:62:42,20:42:1499:20:720:-46.4649,0,-116.54	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.983	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/1:13:4,9:4:140:9:315:-24.7738,0,-9.03119	0/1:51:24,27:24:848:27:968:-72.0844,0,-61.2173	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:33:16,17:16:572:17:612:-45.4794,0,-41.8794	0/1:70:36,34:36:1296:34:1220:-89.0347,0,-95.8718	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:137:64,73:64:2292:73:2612:-194.087,0,-165.3	0/1:84:44,40:44:1572:40:1439:-104.521,0,-116.485	0/1:26:10,16:10:360:16:568:-43.6251,0,-24.9175	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:98:61,37:61:2180:37:1324:-89.9612,0,-166.965	0/1:70:20,50:20:716:50:1773:-138.779,0,-43.6956	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/1:60:27,33:27:959:33:1184:-88.8065,0,-68.5636	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:33:13,20:13:460:20:716:-54.8337,0,-31.8014	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/1:65:38,27:38:1360:27:960:-67.1493,0,-103.134	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:49:48,1:48:1720:1:36:0,-11.1522,-151.487	0/1:38:20,18:20:720:18:635:-46.0378,0,-53.6896	0/0:94:93,0:93:3310:0:0:0,-27.9958,-297.907	0/1:82:39,42:39:1387:42:1512:-111.631,0,-100.385	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:75:33,42:33:1180:42:1500:-112.717,0,-83.9308	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:68:27,41:27:972:41:1476:-112.666,0,-67.3279	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:56:24,32:24:864:32:1152:-87.1325,0,-61.2249	0/1:38:14,24:14:500:24:864:-66.6434,0,-33.897	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63
chr09	12971363	.	T	A	67393.5	PASS	AB=0.496176;ABP=3.39231;AC=129;AF=0.68617;AN=188;AO=3217;CIGAR=1X;DP=4739;DPB=4739;DPRA=16.9749;EPP=6468.84;EPPR=3044.21;GTI=1;LEN=1;MEANALT=1;MQM=59.9969;MQMR=59.9987;NS=94;NUMALT=1;ODDS=0.428635;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115077;QR=54615;RO=1522;RPL=61;RPP=6468.84;RPPR=3044.21;RPR=3156;RUN=1;SAF=3217;SAP=6988.64;SAR=0;SRF=1522;SRP=3307.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	1/1:40:0,40:0:0:40:1429:-128.906,-12.0412,0	1/1:101:1,100:1:36:100:3600:-320.606,-26.8058,0	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:29:12,17:12:428:17:612:-46.6836,0,-30.1289	1/1:84:1,83:1:36:83:2969:-263.843,-21.6882,0	0/1:67:38,29:38:1368:29:1040:-73.7454,0,-103.252	0/1:62:33,29:33:1184:29:1014:-72.9036,0,-88.2045	0/1:66:36,30:36:1284:30:1076:-77.2849,0,-95.9954	0/1:20:9,11:9:324:11:388:-29.2368,0,-23.4853	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:44:27,17:27:968:17:608:-41.8067,0,-74.192	0/1:46:26,20:26:936:20:718:-51.101,0,-70.7121	0/1:36:19,17:19:684:17:612:-44.5764,0,-51.0532	0/1:32:14,18:14:504:18:644:-48.6576,0,-36.0651	0/1:85:49,36:49:1764:36:1296:-91.3564,0,-133.456	1/1:50:1,49:1:36:49:1760:-155.086,-11.4532,0	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:69:27,42:27:968:42:1489:-113.531,0,-66.6663	0/1:68:29,39:29:1044:39:1389:-104.837,0,-73.8048	0/1:62:44,18:44:1584:18:625:-37.9086,0,-124.188	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:68:27,41:27:972:41:1464:-111.585,0,-67.3279	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:147:81,66:81:2899:66:2368:-169.127,0,-216.894	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/1:88:46,42:46:1643:42:1493:-108.172,0,-121.667	0/1:79:35,44:35:1252:44:1565:-117.358,0,-89.2037	0/1:104:45,59:45:1616:59:2116:-159.402,0,-114.423	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:7:1,6:1:36:6:208:-16.9519,0,-1.49106	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:2,5:2:68:5:176:-14.0778,0,-4.3505	0/1:145:72,73:72:2579:73:2602:-190.779,0,-188.709	0/1:91:45,46:45:1620:46:1641:-120.583,0,-118.696	0/1:39:16,23:16:576:23:828:-63.1039,0,-40.4348	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	0/1:17:6,11:6:207:11:396:-30.8652,0,-13.8494	0/1:36:18,18:18:644:18:648:-47.8148,0,-47.4535	0/1:55:32,23:32:1152:23:824:-57.9267,0,-87.4335	0/1:44:24,20:24:864:20:716:-51.5224,0,-64.8372	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:44:0,44:0:0:44:1554:-140.148,-13.2453,0	1/1:78:0,78:0:0:78:2785:-250.889,-23.4803,0	0/1:79:34,45:34:1209:45:1604:-120.869,0,-85.3328	0/1:62:19,43:19:684:43:1533:-119.597,0,-43.2265	1/1:94:0,94:0:0:94:3360:-302.612,-28.2968,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:50:0,50:0:0:50:1781:-160.571,-15.0515,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:50:27,23:27:968:23:828:-59.7926,0,-72.3855	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:11:5,6:5:180:6:201:-15.1057,0,-13.2407	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:32:17,15:17:612:15:518:-37.3117,0,-45.7805	0/1:72:34,38:34:1215:38:1368:-101.747,0,-87.9816	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:132:70,62:70:2512:62:2228:-161.048,0,-186.596	0/1:85:39,46:39:1404:46:1637:-122.029,0,-101.071	0/1:26:16,10:16:572:10:360:-24.9175,0,-43.9866	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:96:37,59:37:1328:59:2124:-162.529,0,-90.9234	0/1:68:49,19:49:1751:19:684:-41.4203,0,-137.403	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	0/1:61:33,28:33:1188:28:989:-70.9592,0,-88.8658	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:39:0,39:0:0:39:1381:-124.587,-11.7402,0	0/1:34:20,14:20:720:14:494:-34.5573,0,-54.8938	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	0/1:62:26,36:26:936:36:1296:-98.2801,0,-65.8956	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:48:1,47:1:36:47:1669:-146.897,-10.8512,0	0/1:40:19,21:19:684:21:756:-56.326,0,-49.8491	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	0/1:84:43,41:43:1548:41:1453:-105.777,0,-114.327	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:77:43,34:43:1540:34:1224:-87.2877,0,-115.714	1/1:110:0,110:0:0:110:3918:-352.812,-33.1133,0	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:69:41,28:41:1472:28:1008:-70.2653,0,-112.005	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:57:33,24:33:1184:24:864:-60.9239,0,-89.7096	0/1:37:23,14:23:828:14:500:-34.1981,0,-63.706	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:58:0,58:0:0:58:2069:-186.479,-17.4597,0
chr09	13324273	.	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chr09	13325146	.	G	A	20938.3	PASS	AB=0.3727;ABP=569.135;AC=54;AF=0.290323;AN=186;AO=1507;CIGAR=1X;DP=7305;DPB=7305;DPRA=0.897316;EPP=3249.41;EPPR=9959.4;GTI=8;LEN=1;MEANALT=1;MQM=59.9834;MQMR=59.9638;NS=93;NUMALT=1;ODDS=0.62359;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52706;QR=207436;RO=5798;RPL=1504;RPP=3249.41;RPPR=7326.42;RPR=3;RUN=1;SAF=1507;SAP=3275.42;SAR=0;SRF=5431;SRP=9607.26;SRR=367;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:4,6:4:144:6:210:-16.2314,0,-10.3033	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/0:120:120,0:120:4285:0:0:0,-36.1236,-385.819	0/0:143:143,0:143:5089:0:0:0,-43.0473,-458.155	0/1:33:22,11:22:784:11:365:-23.2359,0,-60.9499	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.75	0/1:98:71,27:71:2540:27:933:-54.7797,0,-199.193	0/1:41:23,18:23:820:18:597:-41.6985,0,-61.7803	0/1:55:37,18:37:1317:18:640:-41.3727,0,-102.273	0/1:104:73,31:73:2604:31:1075:-65.7502,0,-203.302	0/0:114:114,0:114:4096:0:0:0,-34.3174,-368.824	0/1:85:65,20:65:2324:20:696:-37.3749,0,-183.819	0/1:148:66,82:66:2372:82:2857:-212.818,0,-169.185	0/1:68:46,22:46:1652:22:766:-48.789,0,-128.498	0/1:66:45,21:45:1607:21:756:-48.4992,0,-125.051	0/1:101:62,39:62:2228:39:1348:-91.2123,0,-170.38	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.017	0/0:47:44,3:44:1584:3:104:0,-4.4456,-133.093	0/1:102:90,12:90:3209:12:415:-6.97523,0,-258.195	0/1:121:57,64:57:2017:64:2233:-164.809,0,-145.377	0/1:49:22,27:22:792:27:934:-69.6183,0,-56.8537	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:97:37,60:37:1324:60:2115:-161.417,0,-90.2622	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:143:93,50:93:3321:50:1753:-115.005,0,-256.06	0/0:170:170,0:170:6088:0:0:0,-51.1751,-548.021	0/1:32:20,12:20:720:12:428:-29.2258,0,-55.4958	0/1:132:94,38:94:3364:38:1336:-80.8039,0,-263.235	0/1:91:56,35:56:1997:35:1240:-84.5107,0,-152.608	0/1:29:14,15:14:496:15:540:-40.2067,0,-36.2444	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:17:16,1:16:572:1:36:0,-1.51923,-48.2152	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:177:101,76:101:3617:76:2681:-188.253,0,-272.451	0/1:137:89,48:89:3177:48:1667:-109.07,0,-244.91	0/1:158:136,22:136:4884:22:779:-22.8693,0,-392.148	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:146:146,0:146:5248:0:0:0,-43.9504,-472.454	0/1:47:40,7:40:1440:7:248:-8.51578,0,-115.749	0/1:75:47,28:47:1673:28:980:-65.9357,0,-128.278	0/1:69:44,25:44:1569:25:888:-59.468,0,-120.729	0/1:54:38,16:38:1360:16:564:-34.8347,0,-106.445	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.603	0/1:70:46,24:46:1637:24:848:-55.5676,0,-126.545	0/0:117:117,0:117:4166:0:0:0,-35.2205,-375.121	0/1:59:38,21:38:1349:21:744:-49.5236,0,-103.948	0/1:77:49,28:49:1764:28:996:-66.7756,0,-135.864	0/0:128:128,0:128:4596:0:0:0,-38.5318,-413.803	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:141:141,0:141:5056:0:0:0,-42.4452,-455.183	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/1:7:6,1:6:216:1:32:-1.0921,0,-17.6833	0/1:85:64,21:64:2285:21:740:-41.3358,0,-180.322	0/1:16:14,2:14:492:2:72:-2.02024,0,-39.7959	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:4,1:4:129:1:36:-2.09312,0,-10.4225	0/1:35:23,12:23:809:12:419:-27.5066,0,-62.5923	0/1:167:93,74:93:3336:74:2591:-183.169,0,-250.096	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:89:51,38:51:1828:38:1341:-94.1964,0,-138.009	0/1:109:66,43:66:2360:43:1524:-104.641,0,-179.846	0/1:54:35,19:35:1260:19:657:-43.1948,0,-97.4499	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:79:45,34:45:1600:34:1191:-83.7129,0,-120.509	0/1:27:13,14:13:468:14:500:-37.2084,0,-34.3318	0/0:107:107,0:107:3832:0:0:0,-32.2102,-345.077	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.668	0/1:95:64,31:64:2272:31:1063:-67.3771,0,-176.142	0/1:13:11,2:11:396:2:63:-2.06977,0,-32.0694	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/1:41:22,19:22:792:19:656:-47.018,0,-59.2634	0/0:84:84,0:84:2975:0:0:0,-25.2865,-267.979	0/0:134:133,1:133:4780:1:36:0,-36.7397,-426.756	0/1:81:44,37:44:1580:37:1304:-93.2779,0,-118.108	0/0:104:103,1:103:3684:1:36:0,-27.7088,-328.153	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:68:67,1:67:2404:1:36:0,-16.8718,-213.018	0/1:80:56,24:56:1982:24:796:-47.865,0,-154.568	0/0:207:207,0:207:7428:0:0:0,-62.3132,-668.561	0/1:86:42,44:42:1504:44:1535:-112.553,0,-109.766	0/0:114:114,0:114:4100:0:0:0,-34.3174,-369.183	0/1:65:31,34:31:1112:34:1211:-89.7286,0,-80.8244	0/0:137:136,1:136:4876:1:36:0,-37.6428,-435.394	0/1:34:17,17:17:612:17:571:-41.4704,0,-45.1784	0/1:80:53,27:53:1900:27:960:-62.6339,0,-147.196	0/0:101:101,0:101:3611:0:0:0,-30.404,-325.196	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/1:167:101,66:101:3593:66:2286:-155.697,0,-272.602	0/1:62:31,31:31:1101:31:1062:-77.2191,0,-80.7345	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/0:160:160,0:160:5732:0:0:0,-48.1648,-515.996
chr09	13732774	.	A	G	96439.1	PASS	AB=0.544402;ABP=102.128;AC=128;AF=0.680851;AN=188;AO=7142;CIGAR=1X;DP=9794;DPB=9794;DPRA=0;EPP=15511.7;EPPR=5757.41;GTI=1;LEN=1;MEANALT=1.02128;MQM=28.9849;MQMR=59.457;NS=94;NUMALT=1;ODDS=5.37932;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251347;QR=94282;RO=2650;RPL=0;RPP=15511.7;RPPR=5757.41;RPR=7142;RUN=1;SAF=0;SAP=15511.7;SAR=7142;SRF=0;SRP=5757.41;SRR=2650;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:40,33:40:1420:33:1115:-59.2424,0,-106.041	1/1:73:0,73:0:0:73:2587:-184.326,-21.9752,0	1/1:245:0,245:0:0:245:8600:-614.239,-73.7524,0	1/1:264:0,264:0:0:264:9242:-662.017,-79.4719,0	0/1:82:43,39:43:1532:39:1361:-73.1272,0,-113.489	0/1:50:23,27:23:824:27:968:-53.4648,0,-59.4318	1/1:72:2,70:2:72:70:2475:-169.884,-14.8374,0	0/1:194:85,109:85:3009:109:3842:-216.211,0,-212.443	0/1:95:50,45:50:1792:45:1585:-84.5614,0,-132.965	0/1:85:37,48:37:1303:48:1686:-94.8865,0,-91.983	0/1:62:8,54:8:273:54:1895:-116.627,0,-6.23632	1/1:101:1,100:1:36:100:3466:-246.221,-26.8058,0	0/1:54:19,35:19:658:35:1236:-72.1334,0,-43.2781	0/1:88:39,49:39:1392:49:1710:-96.8099,0,-99.0319	0/1:35:18,17:18:635:17:586:-32.1286,0,-46.9334	0/1:56:21,35:21:752:35:1215:-70.4253,0,-51.1484	0/1:42:10,32:10:360:32:1125:-67.9138,0,-20.101	1/1:30:0,30:0:0:30:1064:-76.0372,-9.0309,0	0/1:40:12,28:12:424:28:991:-58.8552,0,-26.4552	0/1:234:127,107:127:4540:107:3799:-199.529,0,-338.302	0/1:117:70,47:70:2472:47:1676:-84.0421,0,-186.699	0/1:142:90,52:90:3220:52:1838:-88.3736,0,-247.038	1/1:104:3,101:3:108:101:3528:-243.019,-21.232,0	0/1:54:19,35:19:680:35:1220:-71.5164,0,-45.2173	1/1:84:0,84:0:0:84:2940:-211.097,-25.2865,0	0/1:263:136,127:136:4864:127:4524:-242.097,0,-358.245	1/1:252:1,251:1:36:251:8817:-627.753,-72.2613,0	0/1:17:6,11:6:216:11:388:-22.9163,0,-14.673	0/1:264:104,159:104:3728:159:5646:-322.16,0,-255.828	0/1:168:83,85:83:2937:85:2996:-162.965,0,-213.707	0/1:94:46,48:46:1621:48:1698:-92.9915,0,-117.88	1/1:30:0,30:0:0:30:1052:-75.9997,-9.0309,0	0/1:40:18,22:18:648:22:784:-43.9222,0,-46.6107	1/1:35:0,35:0:0:35:1238:-88.4193,-10.5361,0	0/1:63:21,42:21:756:42:1480:-86.7698,0,-49.4023	0/1:51:13,38:13:468:38:1317:-79.3345,0,-27.1071	0/1:96:34,62:34:1185:62:2168:-126.914,0,-78.0536	0/1:196:99,97:99:3520:97:3462:-186.544,0,-257.963	0/1:45:18,27:18:635:27:931:-53.1894,0,-43.9306	0/1:15:6,9:6:216:9:320:-18.5287,0,-15.2751	1/1:141:0,141:0:0:141:4954:-354.299,-42.4452,0	0/1:21:10,11:10:352:11:388:-21.7122,0,-25.6966	0/1:171:95,76:95:3378:76:2716:-141.253,0,-252.759	0/1:33:11,22:11:396:22:788:-46.1175,0,-26.0488	0/1:31:12,19:12:428:19:672:-38.9263,0,-29.5269	1/1:108:0,108:0:0:108:3789:-270.981,-32.5112,0	0/1:185:81,104:81:2889:104:3668:-206.585,0,-204.496	1/1:215:2,213:2:72:213:7566:-531.249,-57.8847,0	0/1:81:60,21:60:2121:21:748:-29.041,0,-166.769	0/1:192:88,104:88:3147:104:3651:-203.198,0,-225.265	1/1:153:0,153:0:0:153:5382:-385.297,-46.0576,0	0/1:46:18,28:18:624:28:1008:-57.526,0,-42.634	1/1:242:0,242:0:0:242:8529:-609.27,-72.8493,0	1/1:124:1,123:1:36:123:4341:-305.787,-33.7294,0	0/1:20:8,12:8:265:12:417:-24.0166,0,-18.1515	0/1:263:125,138:125:4450:138:4887:-269.017,0,-320.36	0/1:18:6,12:6:201:12:432:-25.3312,0,-12.9985	0/1:36:10,26:10:360:26:923:-55.0692,0,-21.9072	0/1:35:15,20:15:540:20:708:-40.2613,0,-38.4005	0/1:97:40,57:40:1420:57:2024:-114.708,0,-98.8414	0/1:82:32,50:32:1140:50:1730:-100.323,0,-78.1186	1/1:37:0,37:0:0:37:1306:-93.4468,-11.1381,0	0/1:107:18,89:18:644:89:3180:-193.278,0,-26.0804	0/1:246:123,123:123:4382:123:4299:-235.825,0,-319.777	0/1:97:43,54:43:1531:54:1898:-106.971,0,-108.882	1/1:129:0,129:0:0:129:4580:-325.628,-38.8329,0	0/1:140:60,80:60:2135:80:2852:-160.642,0,-150.105	0/1:271:184,87:184:6558:87:3032:-135.958,0,-508.544	1/1:93:0,92:0:0:92:3220:-231.08,-27.6948,0	1/1:72:1,71:1:32:71:2487:-176.203,-19.4254,0	0/1:38:16,22:16:576:22:747:-43.1239,0,-40.7358	0/1:35:11,24:11:396:24:860:-50.5934,0,-25.4467	1/1:169:0,169:0:0:169:5893:-422.988,-50.8741,0	0/1:92:34,58:34:1220:58:2042:-118.494,0,-81.6542	1/1:153:0,153:0:0:153:5336:-382.767,-46.0576,0	1/1:144:1,143:1:36:143:5057:-356.73,-39.8122,0	0/1:212:109,103:109:3869:103:3611:-194.435,0,-284.408	1/1:121:0,121:0:0:121:4267:-304.839,-36.4246,0	1/1:40:0,40:0:0:40:1409:-100.468,-12.0412,0	1/1:117:0,117:0:0:117:4103:-293.575,-35.2205,0	0/1:141:50,91:50:1773:91:3202:-186.262,0,-117.135	1/1:193:1,192:1:36:192:6763:-479.281,-54.5005,0	0/1:28:7,21:7:248:21:744:-44.9075,0,-14.2335	1/1:51:0,51:0:0:51:1804:-129.067,-15.3525,0	0/1:25:7,18:7:248:18:636:-38.1935,0,-15.1378	1/1:79:0,79:0:0:79:2766:-199.151,-23.7814,0	0/1:16:8,8:8:284:8:263:-15.1181,0,-21.0869	0/1:50:16,34:16:572:34:1172:-69.8867,0,-36.6493	1/1:72:0,72:0:0:72:2480:-179.545,-21.6742,0	1/1:66:0,66:0:0:66:2300:-165.706,-19.868,0	0/1:118:24,94:24:848:94:3311:-201.582,0,-41.0947	0/1:46:20,26:20:707:26:905:-51.2312,0,-50.051	1/1:120:0,120:0:0:120:4257:-303.269,-36.1236,0	1/1:77:1,76:1:36:76:2673:-187.719,-19.581,0
chr09	13732781	.	A	G	97101.9	PASS	AB=0.541631;ABP=90.3367;AC=128;AF=0.680851;AN=188;AO=7143;CIGAR=1X;DP=9815;DPB=9815;DPRA=0;EPP=15513.8;EPPR=5803.01;GTI=1;LEN=1;MEANALT=1.01064;MQM=28.9868;MQMR=59.4676;NS=94;NUMALT=1;ODDS=8.87425;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253789;QR=95507;RO=2671;RPL=0;RPP=15513.8;RPPR=5803.01;RPR=7143;RUN=1;SAF=0;SAP=15513.8;SAR=7143;SRF=0;SRP=5803.01;SRR=2671;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:73:40,33:40:1424:33:1184:-61.849,0,-106.368	1/1:70:0,70:0:0:70:2508:-177.51,-21.0721,0	1/1:247:0,247:0:0:247:8794:-623.468,-74.3544,0	1/1:263:0,263:0:0:263:9351:-663.798,-79.1709,0	0/1:82:44,38:44:1580:38:1349:-71.0458,0,-117.807	0/1:50:23,27:23:800:27:957:-52.8438,0,-57.2643	1/1:74:2,72:2:72:72:2563:-175.276,-15.4395,0	0/1:194:84,110:84:2990:110:3925:-219.608,0,-210.814	0/1:99:52,47:52:1836:47:1675:-89.106,0,-135.716	0/1:87:39,48:39:1404:48:1728:-95.9632,0,-100.47	0/1:63:8,55:8:284:55:1932:-118.953,0,-6.93846	1/1:101:1,100:1:36:100:3549:-248.465,-26.8058,0	0/1:54:19,35:19:667:35:1256:-72.5728,0,-44.0427	0/1:91:41,50:41:1455:50:1779:-99.2731,0,-103.739	0/1:35:18,17:18:648:17:599:-32.5186,0,-48.0595	0/1:54:20,34:20:712:34:1204:-69.5986,0,-48.151	0/1:41:9,32:9:324:32:1139:-68.7982,0,-17.1636	1/1:30:0,30:0:0:30:1058:-75.724,-9.0309,0	0/1:38:11,27:11:396:27:968:-57.3073,0,-24.5436	0/1:234:126,108:126:4532:108:3855:-203.025,0,-337.547	0/1:122:72,50:72:2562:50:1788:-90.2417,0,-193.288	0/1:143:90,53:90:3236:53:1870:-89.9731,0,-248.245	1/1:101:3,98:3:108:98:3467:-236.632,-20.3289,0	0/1:57:22,35:22:783:35:1251:-71.61,0,-53.578	1/1:83:0,83:0:0:83:2929:-208.777,-24.9855,0	0/1:258:135,123:135:4834:123:4412:-234.559,0,-356.993	1/1:258:1,257:1:36:257:9104:-643.806,-74.0675,0	0/1:17:6,11:6:216:11:392:-23.0048,0,-14.673	0/1:263:103,160:103:3696:160:5700:-325.695,0,-253.222	0/1:172:86,86:86:3084:86:3045:-164.12,0,-225.726	0/1:92:44,48:44:1580:48:1711:-93.9819,0,-114.797	1/1:28:1,27:1:36:27:960:-65.0344,-4.89272,0	0/1:39:17,22:17:612:22:758:-42.8921,0,-43.6733	1/1:34:0,34:0:0:34:1211:-86.1811,-10.235,0	0/1:64:22,42:22:769:42:1508:-87.5652,0,-50.2627	0/1:50:13,37:13:464:37:1292:-77.6454,0,-27.046	0/1:96:35,61:35:1252:61:2173:-125.378,0,-84.0819	0/1:197:102,95:102:3663:95:3355:-180.089,0,-270.506	0/1:43:17,26:17:604:26:921:-52.0143,0,-41.7463	0/1:15:6,9:6:216:9:306:-18.0103,0,-15.2751	1/1:141:0,141:0:0:141:5037:-357.526,-42.4452,0	0/1:21:10,11:10:360:11:396:-21.8892,0,-26.4227	0/1:171:95,76:95:3397:76:2719:-141.139,0,-254.466	0/1:32:11,21:11:396:21:748:-43.7915,0,-26.3498	0/1:31:12,19:12:432:19:676:-39.0144,0,-29.8893	1/1:109:0,109:0:0:109:3886:-275.441,-32.8123,0	0/1:184:82,102:82:2948:102:3590:-201.27,0,-210.048	1/1:213:2,211:2:72:211:7434:-523.011,-57.2827,0	0/1:85:64,21:64:2266:21:721:-26.9325,0,-178.614	0/1:195:90,105:90:3227:105:3753:-206.967,0,-231.551	1/1:150:0,150:0:0:150:5348:-379.508,-45.1545,0	0/1:47:19,28:19:684:28:1008:-57.2249,0,-47.7419	1/1:242:0,242:0:0:242:8617:-610.722,-72.8493,0	1/1:127:1,126:1:36:126:4496:-315.332,-34.6325,0	0/1:20:8,12:8:288:12:423:-24.4265,0,-20.2468	0/1:264:126,138:126:4497:138:4894:-268.79,0,-324.216	0/1:18:6,12:6:216:12:432:-25.3312,0,-14.372	0/1:37:11,26:11:388:26:932:-55.0693,0,-24.1193	0/1:34:15,19:15:536:19:680:-38.1995,0,-38.3398	0/1:95:41,54:41:1468:54:1940:-108.701,0,-103.762	0/1:81:31,50:31:1116:50:1783:-102.371,0,-76.2621	1/1:37:0,37:0:0:37:1295:-92.8265,-11.1381,0	0/1:102:17,85:17:604:85:3039:-184.826,0,-23.9855	0/1:253:129,123:129:4623:123:4409:-236.284,0,-339.332	0/1:94:43,51:43:1531:51:1797:-100.239,0,-109.729	1/1:131:0,131:0:0:131:4621:-330.023,-39.4349,0	0/1:145:62,83:62:2215:83:2940:-165.757,0,-155.797	0/1:268:181,87:181:6485:87:3115:-140.021,0,-502.875	1/1:91:0,91:0:0:91:3243:-230.502,-27.3937,0	1/1:71:0,71:0:0:71:2518:-178.471,-21.3731,0	0/1:38:16,22:16:576:22:780:-44.4362,0,-40.7358	0/1:34:11,23:11:396:23:828:-48.4435,0,-25.7477	1/1:170:0,170:0:0:170:6047:-429.266,-51.1751,0	0/1:93:32,61:32:1152:61:2183:-126.546,0,-75.9382	1/1:152:0,152:0:0:152:5371:-382.023,-45.7566,0	1/1:146:0,146:0:0:146:5218:-370.341,-43.9504,0	0/1:210:109,101:109:3862:101:3593:-191.861,0,-284.436	1/1:121:0,121:0:0:121:4323:-306.533,-36.4246,0	1/1:41:0,41:0:0:41:1459:-103.59,-12.3422,0	1/1:116:0,116:0:0:116:4094:-292.006,-34.9195,0	0/1:141:51,90:51:1828:90:3176:-183.736,0,-122.085	1/1:195:1,194:1:36:194:6884:-486.03,-55.1026,0	0/1:29:8,21:8:280:21:744:-44.6065,0,-16.7812	1/1:52:0,52:0:0:52:1853:-131.513,-15.6536,0	0/1:25:7,18:7:252:18:639:-38.1562,0,-15.5016	1/1:81:0,81:0:0:81:2842:-204.037,-24.3834,0	0/1:16:8,8:8:288:8:261:-14.7951,0,-21.4509	0/1:49:15,34:15:540:34:1199:-71.4714,0,-34.1297	1/1:73:0,73:0:0:73:2571:-183.64,-21.9752,0	1/1:66:0,66:0:0:66:2343:-167.027,-19.868,0	0/1:120:23,97:23:824:97:3439:-209.224,0,-38.3597	0/1:46:21,25:21:741:25:883:-49.3519,0,-53.1623	1/1:123:0,123:0:0:123:4328:-309.499,-37.0267,0	1/1:77:1,76:1:36:76:2715:-188.846,-19.581,0
chr09	13732834	.	AA	GA	25971	PASS	AB=0.684123;ABP=1594.28;AC=63;AF=0.335106;AN=188;AO=4304;CIGAR=1X1M;DP=7790;DPB=7790;DPRA=2.08704;EPP=9349.03;EPPR=7548.88;GTI=17;LEN=1;MEANALT=1.10606;MQM=24.8785;MQMR=48.0944;NS=94;NUMALT=1;ODDS=0.511397;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107202;QR=123880;RO=3475;RPL=0;RPP=9349.03;RPPR=7548.88;RPR=4304;RUN=1;SAF=4304;SAP=9349.03;SAR=0;SRF=3475;SRP=7548.88;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:2,20:2:72:20:494:-32.6947,-0.163094,0	0/0:36:36,0:36:1266:0:0:0,-10.8371,-112.611	0/0:57:57,0:57:2031:0:0:0,-17.1587,-180.432	0/0:77:76,0:76:2687:0:0:0,-22.8783,-239.223	0/1:12:6,6:6:216:6:150:-8.48575,0,-16.0415	0/1:25:4,21:4:144:21:525:-34.2677,0,-5.64113	0/0:73:71,2:71:2536:2:50:0,-17.7958,-223.073	0/1:52:10,42:10:360:42:1032:-66.0935,0,-16.4829	0/1:27:21,6:21:750:6:145:-3.51334,0,-57.396	0/1:52:24,28:24:849:28:700:-39.9978,0,-59.5311	0/1:158:36,122:36:1292:122:3060:-193.9,0,-67.6293	0/0:43:43,0:43:1537:0:0:0,-12.9443,-134.419	0/1:27:13,14:13:460:14:345:-19.3556,0,-33.1691	0/1:26:10,16:10:360:16:400:-24.0682,0,-24.6915	0/1:28:19,9:19:684:9:225:-9.60835,0,-53.2216	0/1:48:28,20:28:1006:20:485:-24.0109,0,-74.8562	0/1:31:13,18:13:455:18:443:-25.8903,0,-31.1909	0/0:21:21,0:21:754:0:0:0,-6.32163,-65.084	0/1:55:12,43:12:428:43:1069:-68.25,0,-21.8959	0/1:76:36,40:36:1292:40:994:-56.0687,0,-92.377	0/1:92:55,37:55:1962:37:925:-45.7738,0,-147.493	0/1:84:23,61:23:822:61:1524:-95.6047,0,-48.1681	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.2233	0/1:33:28,5:28:998:5:123:-0.000803972,0,-77.272	0/0:20:20,0:20:716:0:0:0,-6.0206,-63.0768	0/1:93:25,68:25:884:68:1685:-105.634,0,-50.9547	0/0:66:66,0:66:2356:0:0:0,-19.868,-210.025	0/1:13:6,7:6:216:7:175:-10.1644,0,-15.7405	0/1:132:51,81:51:1811:81:2019:-120.299,0,-122.225	0/1:73:28,45:28:995:45:1117:-66.6108,0,-67.0121	0/1:45:11,34:11:383:34:857:-53.433,0,-21.065	0/0:158:157,1:157:5591:1:25:0,-45.3631,-494.962	1/1:270:16,254:16:576:254:6325:-449.418,-29.8801,0	0/0:63:63,0:63:2231:0:0:0,-18.9649,-197.172	0/1:737:118,619:118:4179:619:15382:-992.59,0,-149.681	1/1:343:17,325:17:610:325:8062:-582.312,-48.5557,0	0/1:98:58,39:58:2082:39:975:-47.982,0,-156.961	0/1:64:21,43:21:754:43:1071:-65.5735,0,-48.0981	0/1:124:23,101:23:828:101:2513:-160.982,0,-35.2319	0/1:190:34,156:34:1195:156:3898:-251.676,0,-49.0323	0/0:37:36,1:36:1286:1:25:0,-8.93845,-112.804	0/1:66:22,44:22:782:44:1095:-67.0086,0,-49.6573	0/1:26:7,19:7:252:19:471:-29.6459,0,-14.8733	0/1:23:16,7:16:574:7:175:-7.15412,0,-44.8579	0/1:25:15,10:15:540:10:245:-12.1781,0,-41.1454	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.041	0/1:60:9,51:9:324:51:1258:-81.5926,0,-11.0846	0/0:56:56,0:56:1989:0:0:0,-16.8577,-177.161	0/1:49:15,34:15:536:34:846:-52.5586,0,-30.6872	0/1:82:41,41:41:1472:41:1015:-55.9421,0,-106.353	0/0:57:57,0:57:2031:0:0:0,-17.1587,-182.42	0/1:348:61,286:61:2184:286:7126:-459.581,0,-89.0726	0/0:39:39,0:39:1382:0:0:0,-11.7402,-122.554	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.2211	0/1:168:23,145:23:828:145:3598:-234.495,0,-22.8759	0/1:60:30,30:30:1067:30:741:-40.878,0,-75.8404	0/1:17:2,15:2:72:15:374:-24.7073,0,-1.69681	0/1:373:74,298:74:2643:298:7480:-475.376,0,-124.801	0/1:289:96,193:96:3433:193:4824:-294.459,0,-216.955	0/1:50:27,23:27:972:23:575:-30.7014,0,-70.4558	0/1:55:27,28:27:972:28:699:-39.0046,0,-70.6294	0/0:71:69,1:69:2458:1:25:0,-19.1376,-217.378	0/1:68:52,16:52:1866:16:395:-10.9732,0,-145.816	0/1:113:56,57:56:1999:57:1412:-77.8772,0,-144.219	0/1:43:23,20:23:824:20:501:-26.9599,0,-60.1872	0/0:14:14,0:14:502:0:0:0,-4.21442,-45.312	0/1:84:34,50:34:1220:50:1250:-73.2513,0,-83.718	0/1:94:30,64:30:1050:64:1596:-98.2635,0,-65.3512	0/0:38:38,0:38:1366:0:0:0,-11.4391,-122.375	0/0:18:18,0:18:628:0:0:0,-5.41854,-54.2291	0/1:31:22,9:22:781:9:223:-8.5234,0,-61.131	0/1:294:29,265:29:1038:265:6612:-434.271,0,-4.60103	0/0:46:46,0:46:1641:0:0:0,-13.8474,-145.846	0/1:50:33,17:33:1167:17:434:-19.8029,0,-88.2557	0/0:49:49,0:49:1752:0:0:0,-14.7505,-155.41	0/0:74:74,0:74:2640:0:0:0,-22.2762,-236.438	0/1:72:21,51:21:745:51:1282:-78.9603,0,-44.7832	0/0:76:76,0:76:2711:0:0:0,-22.8783,-240.114	0/0:98:98,0:98:3443:0:0:0,-29.5009,-304.577	0/0:26:24,2:24:864:2:50:0,-3.64743,-72.9217	0/1:30:6,24:6:216:24:596:-38.4809,0,-10.507	0/0:63:63,0:63:2243:0:0:0,-18.9649,-199.375	0/1:36:23,13:23:828:13:320:-14.6664,0,-63.0005	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.0607	0/1:24:17,7:17:606:7:173:-6.6706,0,-47.4754	0/0:66:65,1:65:2327:1:23:0,-17.8679,-205.195	0/1:18:10,8:10:360:8:200:-10.639,0,-26.1163	0/1:32:19,12:19:684:12:300:-14.367,0,-51.4992	0/0:31:31,0:31:1097:0:0:0,-9.33193,-97.3672	0/0:36:36,0:36:1292:0:0:0,-10.8371,-115.665	0/1:293:142,151:142:5082:151:3770:-210.649,0,-362.759	0/1:36:8,28:8:286:28:700:-44.8142,0,-15.1363	0/0:72:72,0:72:2555:0:0:0,-21.6742,-229.438	0/0:63:63,0:63:2251:0:0:0,-18.9649,-201.176
chr09	13732843	.	GTTA	GTTG,TTTG	113871	PASS	AB=0.3115,0.683359;ABP=1623.92,1536.72;AC=124,64;AF=0.659574,0.340426;AN=188;AO=3405,4507;CIGAR=3M1X,1X2M1X;DP=7952;DPB=7952.25;DPRA=0,2.17682;EPP=7396.87,9781.15;EPPR=11.6962;GTI=10;LEN=1,4;MEANALT=2.02128,2.40909;MQM=48.1289,24.5667;MQMR=60;NS=94;NUMALT=2;ODDS=8446.99;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.333333;PQA=10.6667,10.6667;PQR=0;PRO=0;QA=121522,159376;QR=142;RO=4;RPL=0,0;RPP=7396.87,9789.84;RPPR=11.6962;RPR=3405,4507;RUN=1,1;SAF=3405,4506;SAP=7396.87,9781.15;SAR=0,1;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	2/2:26:0,2,24:0:0:2,24:72,847:-50.6701,-44.8574,-44.2553,-7.22472,-1.06541,0	1/1:35:0,35,0:0:0:35,0:1241,0:-110.219,-10.5361,0,-110.219,-10.5361,-110.219	1/1:57:0,57,0:0:0:57,0:2030,0:-180.444,-17.1587,0,-180.444,-17.1587,-180.444	1/1:77:0,77,0:0:0:77,0:2752,0:-244.999,-23.1793,0,-244.999,-23.1793,-244.999	1/2:13:0,6,7:0:0:6,7:216,247:-30.0614,-12.5115,-10.7053,-17.8477,0,-15.7405	1/2:28:0,4,24:0:0:4,24:144,847:-56.9685,-45.3454,-44.1413,-11.9628,0,-4.73804	1/1:74:0,71,3:0:0:71,3:2506,108:-224.4,-21.3731,0,-219.97,-16.7389,-219.067	1/2:52:0,9,43:0:0:9,43:299,1532:-104.54,-80.6103,-77.9011,-24.2429,0,-11.2986	1/2:28:0,20,7:0:0:20,7:707,242:-69.7584,-12.9726,-6.952,-56.8585,0,-54.7513	1/2:51:0,23,28:0:0:23,28:797,997:-118.228,-53.8531,-46.9294,-64.6746,0,-56.2458	1/2:162:0,34,127:0:0:34,127:1216,4468:-334.872,-237.193,-226.958,-97.759,0,-59.5282	1/1:43:0,43,0:0:0:43,0:1540,0:-134.7,-12.9443,0,-134.7,-12.9443,-134.7	1/2:27:0,13,14:0:0:13,14:468,485:-64.2367,-26.4592,-22.5458,-38.0783,0,-33.8639	1/2:26:0,10,16:0:0:10,16:360,567:-60.0103,-30.8168,-27.8065,-29.508,0,-24.6915	1/2:27:0,18,9:0:0:18,9:648,299:-69.8117,-17.0881,-11.6695,-53.0041,0,-50.2948	1/2:47:0,28,19:0:0:28,19:1004,684:-116.857,-36.4434,-28.0145,-80.7016,0,-74.9821	1/2:31:0,12,19:0:0:12,19:432,657:-71.0893,-36.2253,-32.6129,-35.1766,0,-29.457	1/1:21:0,21,0:0:0:21,0:756,0:-65.2516,-6.32163,0,-65.2516,-6.32163,-65.2516	1/2:58:0,12,46:0:0:12,46:432,1625:-120.013,-85.1679,-81.5555,-35.1766,0,-21.3292	1/2:78:0,36,42:0:0:36,42:1281,1491:-182.148,-78.8483,-68.0112,-103.6,0,-90.957	1/2:93:0,54,38:0:0:54,38:1909,1367:-227.152,-73.065,-56.8093,-154.271,0,-142.832	1/2:85:0,20,64:0:0:20,64:705,2258:-178.686,-121.395,-115.374,-57.3325,0,-38.0665	1/1:21:0,20,0:0:0:20,0:720,0:-63.5509,-6.0206,0,-63.5509,-6.0206,-63.5509	1/2:32:0,24,5:0:0:24,5:864,163:-76.5232,-9.07045,-1.84573,-67.4057,0,-65.9006	1/1:19:0,19,0:0:0:19,0:684,0:-60.208,-5.71957,0,-60.208,-5.71957,-60.208	1/2:98:0,24,74:0:0:24,74:842,2610:-204.877,-137.246,-130.021,-67.9509,0,-45.6747	1/1:66:0,66,0:0:0:66,0:2360,0:-210.368,-19.868,0,-210.368,-19.868,-210.368	1/2:14:0,6,8:0:0:6,8:216,286:-31.882,-14.3368,-12.5306,-17.8477,0,-15.4395	1/2:136:0,50,86:0:0:50,86:1796,3051:-304.291,-159.075,-144.023,-145.529,0,-119.641	1/2:76:0,28,48:0:0:28,48:1000,1708:-170.971,-90.1617,-81.7328,-81.1215,0,-66.6721	1/2:48:0,11,37:0:0:11,37:396,1308:-102.755,-70.7285,-67.4172,-32.3573,0,-21.2192	1/1:158:0,155,1:0:0:155,1:5549,36:-492.912,-46.6597,0,-490.993,-44.7527,-490.692	2/2:282:0,15,267:0:0:15,267:540,9463:-580.553,-537.235,-532.72,-80.375,-36.7087,0	1/1:60:0,60,0:0:0:60,0:2114,0:-186.926,-18.0618,0,-186.926,-18.0618,-186.926	1/2:774:1,115,651:1:35:115,651:4116,23020:-1544.88,-1214.59,-1182.82,-327.794,0,-134.671	2/2:362:0,17,342:0:0:17,342:597,12147:-736.886,-688.885,-683.768,-102.952,-54.8301,0	1/2:98:0,59,39:0:0:59,39:2116,1370:-244.846,-74.4574,-56.6966,-170.677,0,-158.937	1/2:67:0,21,46:0:0:21,46:756,1624:-146.046,-85.1501,-78.8284,-61.2146,0,-47.3672	1/2:126:0,21,105:0:0:21,105:756,3722:-256.01,-196.509,-190.187,-59.7854,0,-28.1773	1/2:197:0,34,163:0:0:34,163:1212,5749:-403.924,-306.772,-296.537,-97.4844,0,-48.4165	1/1:37:0,36,1:0:0:36,1:1262,36:-112.839,-10.8371,0,-110.923,-8.6712,-110.622	1/2:66:0,20,45:0:0:20,45:720,1599:-141.565,-84.0745,-78.0539,-57.6032,0,-44.0569	1/2:25:0,6,19:0:0:6,19:216,683:-53.7128,-36.3634,-34.5572,-17.6774,0,-11.9578	1/2:23:0,16,7:0:0:16,7:572,251:-60.1804,-13.6735,-8.85703,-46.7867,0,-44.6795	1/2:26:0,15,11:0:0:15,11:540,382:-64.191,-20.3231,-15.8076,-44.1557,0,-40.8444	1/1:42:0,42,0:0:0:42,0:1508,0:-135.56,-12.6433,0,-135.56,-12.6433,-135.56	1/2:63:0,9,54:0:0:9,54:324,1902:-127.541,-101.443,-98.7334,-26.4371,0,-10.1815	1/1:53:0,53,0:0:0:53,0:1873,0:-167.699,-15.9546,0,-167.699,-15.9546,-167.699	1/2:51:0,15,36:0:0:15,36:540,1253:-108.522,-67.5526,-63.0371,-41.2776,0,-30.4405	1/2:81:0,41,40:0:0:41,40:1476,1422:-195.056,-76.308,-63.9657,-119.047,0,-107.006	1/1:56:0,56,0:0:0:56,0:2008,0:-180.404,-16.8577,0,-180.404,-16.8577,-180.404	1/2:353:0,57,296:0:0:57,296:2044,10396:-723.133,-558.968,-541.809,-164.501,0,-75.3962	1/1:39:0,39,0:0:0:39,0:1372,0:-121.539,-11.7402,0,-121.539,-11.7402,-121.539	1/1:24:0,24,0:0:0:24,0:845,0:-76.2072,-7.22472,0,-76.2072,-7.22472,-76.2072	1/2:182:0,23,159:0:0:23,159:828,5635:-360.316,-294.13,-287.206,-66.5253,0,-18.6615	1/2:62:0,31,31:0:0:31,31:1093,1095:-145.15,-58.3288,-48.9969,-87.1145,0,-77.7826	1/2:17:0,2,15:0:0:2,15:72,530:-34.6974,-28.8305,-28.2284,-6.21226,0,-1.69681	1/2:385:0,73,311:0:0:73,311:2609,10994:-793.416,-581.804,-559.829,-211.776,0,-118.156	1/2:292:0,92,198:0:0:92,198:3300,7056:-638.403,-373.993,-346.299,-264.502,0,-204.898	1/2:50:0,27,23:0:0:27,23:972,827:-121.466,-44.3806,-36.2527,-77.3795,0,-70.4558	1/2:56:0,27,29:0:0:27,29:972,1033:-133.262,-54.5056,-46.3778,-79.0583,0,-70.3284	1/1:71:0,70,1:0:0:70,1:2465,35:-220.256,-21.0721,0,-218.346,-18.9144,-218.045	1/2:66:0,50,16:0:0:50,16:1781,565:-173.763,-30.4233,-15.3718,-143.609,0,-138.792	1/2:114:0,56,58:0:0:56,58:2012,2051:-271.071,-108.923,-92.0658,-162.447,0,-144.987	1/2:42:0,21,21:0:0:21,21:741,730:-99.5933,-39.6567,-33.335,-60.2328,0,-53.9112	1/1:13:0,13,0:0:0:13,0:464,0:-41.9053,-3.91339,0,-41.9053,-3.91339,-41.9053	1/2:86:0,34,51:0:0:34,51:1212,1794:-190.275,-94.3021,-84.0671,-96.0284,0,-80.6758	1/2:105:0,29,76:0:0:29,76:1040,2652:-221.075,-137.275,-128.545,-84.1218,0,-61.2435	1/1:38:0,38,0:0:0:38,0:1364,0:-122.195,-11.4391,0,-122.195,-11.4391,-122.195	1/1:18:0,18,0:0:0:18,0:648,0:-55.352,-5.41854,0,-55.352,-5.41854,-55.352	1/2:32:0,22,10:0:0:22,10:783,359:-82.8386,-19.2626,-12.6399,-63.855,0,-60.8447	2/2:304:0,26,276:0:0:26,276:902,9756:-601.394,-528.73,-520.903,-83.0843,-10.3021,0	1/1:44:0,44,0:0:0:44,0:1584,0:-140.735,-13.2453,0,-140.735,-13.2453,-140.735	1/2:51:0,33,18:0:0:33,18:1159,637:-127.777,-35.4234,-25.4894,-92.6373,0,-87.2187	1/1:48:0,48,0:0:0:48,0:1720,0:-153.899,-14.4494,0,-153.899,-14.4494,-153.899	1/1:74:0,73,0:0:0:73,0:2605,0:-233.122,-21.9752,0,-233.122,-21.9752,-233.122	1/2:74:0,20,53:0:0:20,53:716,1887:-156.38,-98.6934,-92.6728,-57.7478,0,-41.7932	1/1:75:0,75,0:0:0:75,0:2677,0:-237.09,-22.5773,0,-237.09,-22.5773,-237.09	1/1:95:0,95,0:0:0:95,0:3404,0:-300.767,-28.5979,0,-300.767,-28.5979,-300.767	1/1:25:0,23,2:0:0:23,2:824,72:-73.2822,-6.92369,0,-69.4524,-2.83863,-68.8503	1/2:30:0,6,24:0:0:6,24:216,855:-63.6056,-46.2073,-44.4011,-17.7317,0,-10.507	1/1:64:3,60,0:3:107:60,0:2145,0:-180.735,-9.32592,0,-181.638,-18.0618,-190.361	1/2:37:0,22,15:0:0:22,15:792,536:-91.7417,-27.4211,-20.7985,-64.6053,0,-60.0899	1/1:15:0,15,0:0:0:15,0:540,0:-47.8443,-4.51545,0,-47.8443,-4.51545,-47.8443	1/2:24:0,17,7:0:0:17,7:612,252:-63.3459,-13.5091,-8.39155,-50.1143,0,-48.0071	1/1:64:0,63,1:0:0:63,1:2260,29:-200.888,-18.9649,0,-199.208,-17.0628,-198.907	1/2:18:0,10,8:0:0:10,8:360,286:-43.8171,-15.5835,-12.5732,-28.5245,0,-26.1163	1/2:33:0,20,13:0:0:20,13:716,466:-82.1974,-25.1813,-19.1607,-57.3034,0,-53.39	1/1:30:0,30,0:0:0:30,0:1080,0:-96.0495,-9.0309,0,-96.0495,-9.0309,-96.0495	1/1:36:0,36,0:0:0:36,0:1284,0:-115.006,-10.8371,0,-115.006,-10.8371,-115.006	1/2:299:0,142,152:0:0:142,152:5038,5354:-692.603,-287.395,-244.649,-405.288,0,-359.531	1/2:37:0,8,28:0:0:8,28:288,988:-76.1878,-52.7937,-50.3855,-23.478,0,-15.0492	1/1:71:0,71,0:0:0:71,0:2536,0:-227.664,-21.3731,0,-227.664,-21.3731,-227.664	1/1:63:0,63,0:0:0:63,0:2259,0:-202,-18.9649,0,-202,-18.9649,-202
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chr09	13739464	.	T	C	13043.8	PASS	AB=0.303188;ABP=1364.62;AC=55;AF=0.292553;AN=188;AO=1233;CIGAR=1X;DP=6738;DPB=6738;DPRA=1.15454;EPP=2680.44;EPPR=11715;GTI=7;LEN=1;MEANALT=1;MQM=41.0633;MQMR=58.1201;NS=94;NUMALT=1;ODDS=1.93898;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43787;QR=196869;RO=5505;RPL=1233;RPP=2680.44;RPPR=11715;RPR=0;RUN=1;SAF=1233;SAP=2680.44;SAR=0;SRF=5505;SRP=11957;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:42,7:42:1491:7:243:-6.42178,0,-119.732	0/0:128:128,0:128:4583:0:0:0,-38.5318,-412.623	0/0:75:75,0:75:2657:0:0:0,-22.5772,-239.367	0/0:113:113,0:113:4060:0:0:0,-34.0164,-360.029	0/1:37:17,20:17:608:20:699:-50.41,0,-43.9139	0/1:38:30,8:30:1068:8:284:-14.1025,0,-84.9738	0/0:80:80,0:80:2840:0:0:0,-24.0824,-254.165	0/1:86:68,18:68:2414:18:648:-30.1998,0,-191.625	0/1:92:75,17:75:2696:17:608:-25.965,0,-215.174	0/1:84:68,16:68:2436:16:576:-25.9405,0,-189.76	0/1:26:20,6:20:716:6:212:-10.7257,0,-55.8198	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.632	0/1:77:56,21:56:1994:21:747:-40.2404,0,-156.543	0/1:44:26,18:26:927:18:629:-40.5921,0,-70.1227	0/1:54:34,20:34:1220:20:716:-45.3676,0,-93.0631	0/1:51:25,26:25:900:26:923:-62.6602,0,-64.8548	0/1:66:50,16:50:1792:16:572:-29.5,0,-141.684	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.746	0/1:26:20,6:20:716:6:216:-11.003,0,-56.9409	0/1:97:59,38:59:2080:38:1360:-86.5904,0,-156.04	0/1:93:59,34:59:2086:34:1220:-79.211,0,-157.026	0/1:85:45,40:45:1608:40:1436:-98.3836,0,-119.422	0/0:68:68,0:68:2424:0:0:0,-20.47,-213.963	0/1:75:32,43:32:1152:43:1512:-109.447,0,-79.1877	0/0:43:43,0:43:1536:0:0:0,-12.9443,-137.421	0/1:284:203,81:203:7299:81:2896:-165.525,0,-568.698	0/0:189:187,2:187:6689:2:72:0,-50.537,-593.803	0/1:29:21,8:21:752:8:288:-16.2624,0,-58.5226	0/1:137:100,37:100:3570:37:1309:-71.7045,0,-280.265	0/1:130:98,32:98:3512:32:1118:-59.2317,0,-273.442	0/1:74:60,14:60:2135:14:496:-22.0058,0,-168.659	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:4,2:4:144:2:72:-4.69866,0,-10.367	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:231:186,45:186:6666:45:1601:-66.5724,0,-530.072	0/1:134:94,40:94:3380:40:1397:-80.7749,0,-259.764	0/1:30:18,12:18:640:12:428:-27.5389,0,-48.886	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.18762	0/0:102:102,0:102:3634:0:0:0,-30.7051,-324.484	0/1:25:20,5:20:720:5:180:-7.53823,0,-55.0016	0/1:117:89,28:89:3196:28:991:-52.4994,0,-248.192	0/1:64:42,22:42:1508:22:769:-44.872,0,-114.896	0/1:38:24,14:24:860:14:500:-30.5533,0,-64.7909	0/0:103:103,0:103:3681:0:0:0,-31.0061,-331.49	0/1:66:38,28:38:1364:28:981:-65.4854,0,-103.193	0/0:120:118,2:118:4223:2:72:0,-29.3814,-367.211	0/1:107:82,25:82:2944:25:900:-46.1564,0,-226.789	0/1:60:40,20:40:1423:20:720:-44.6967,0,-109.924	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.162	0/1:5:2,3:2:72:3:108:-8.19752,0,-5.33157	0/0:111:111,0:111:3967:0:0:0,-33.4143,-357.212	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.344	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:39:19,20:19:684:20:705:-49.769,0,-50.1364	0/1:33:25,8:25:892:8:284:-15.5188,0,-66.0192	0/1:5:2,3:2:72:3:108:-7.73212,0,-5.33157	0/0:11:10,1:10:360:1:36:0,-0.0123053,-29.4453	0/1:83:62,21:62:2224:21:756:-42.3233,0,-173.958	0/1:104:70,34:70:2508:34:1224:-73.7974,0,-191.141	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.6919	0/1:122:87,35:87:3103:35:1232:-68.9897,0,-242.751	0/1:198:139,59:139:4992:59:2071:-121.457,0,-384.546	0/1:67:50,17:50:1772:17:599:-33.0922,0,-138.479	0/0:39:39,0:39:1392:0:0:0,-11.7402,-123.685	0/1:97:61,36:61:2168:36:1296:-85.2922,0,-163.221	0/1:83:53,30:53:1904:30:1056:-67.6474,0,-140.356	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.6535	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.607	0/1:56:41,15:41:1463:15:532:-28.0018,0,-115.104	0/1:18:8,10:8:288:10:356:-25.9156,0,-19.7247	0/0:112:112,0:112:3998:0:0:0,-33.7154,-360.002	0/1:29:15,14:15:540:14:504:-34.8855,0,-40.2043	0/0:161:161,0:161:5702:0:0:0,-48.4658,-507.747	0/0:110:110,0:110:3948:0:0:0,-33.1133,-352.27	0/1:83:54,29:54:1924:29:1011:-64.3848,0,-148.44	0/0:84:83,1:83:2980:1:32:0,-22.1197,-265.265	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:69:69,0:69:2484:0:0:0,-20.7711,-221.208	0/1:33:16,17:16:568:17:608:-43.7489,0,-41.5117	0/0:169:169,0:169:6042:0:0:0,-50.8741,-537.74	0/1:115:80,35:80:2872:35:1244:-71.5255,0,-221.767	0/0:59:59,0:59:2116:0:0:0,-17.7608,-189.228	0/1:60:37,23:37:1319:23:822:-51.1635,0,-99.2693	0/0:132:132,0:132:4732:0:0:0,-39.736,-421.581	0/1:41:30,11:30:1080:11:388:-21.4596,0,-85.1687	0/1:96:76,20:76:2728:20:708:-32.1767,0,-216.863	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.388	0/0:25:25,0:25:888:0:0:0,-7.52575,-79.8571	0/1:35:27,8:27:959:8:284:-14.1802,0,-74.9617	0/1:33:21,12:21:748:12:432:-26.465,0,-56.5953	0/0:78:78,0:78:2766:0:0:0,-23.4803,-248.392	0/0:91:91,0:91:3260:0:0:0,-27.3937,-291.937
chr09	13739561	.	C	T	54753.6	PASS	AB=0.427727;ABP=386.882;AC=93;AF=0.494681;AN=188;AO=3620;CIGAR=1X;DP=8472;DPB=8472;DPRA=0;EPP=7863.74;EPPR=10521.6;GTI=1;LEN=1;MEANALT=1.03191;MQM=52.8702;MQMR=59.4517;NS=94;NUMALT=1;ODDS=94.3395;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127219;QR=172763;RO=4848;RPL=0;RPP=7863.74;RPPR=10521.6;RPR=3620;RUN=1;SAF=0;SAP=7863.74;SAR=3620;SRF=0;SRP=10530.3;SRR=4848;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:32,12:32:1125:12:432:-24.9412,0,-88.2845	0/1:97:45,52:45:1593:52:1808:-133.195,0,-114.449	0/1:132:48,84:48:1713:84:2962:-225.371,0,-114.632	0/1:165:62,103:62:2224:103:3608:-274.336,0,-150.751	0/1:50:30,20:30:1076:20:699:-48.1009,0,-82.0737	0/1:39:24,15:24:860:15:536:-36.6181,0,-65.9644	0/1:101:42,59:42:1504:59:2050:-153.786,0,-104.383	0/1:127:101,26:101:3605:26:924:-44.1643,0,-286.183	0/1:75:43,32:43:1521:32:1110:-76.2947,0,-114.587	0/1:76:55,21:55:1968:21:744:-44.1086,0,-154.356	0/1:82:54,28:54:1920:28:989:-63.7792,0,-148.354	0/1:111:53,58:53:1888:58:2056:-151.34,0,-136.769	0/1:107:89,18:89:3173:18:629:-24.4124,0,-253.532	0/1:63:45,18:45:1616:18:640:-38.7612,0,-126.764	0/1:52:44,8:44:1561:8:288:-10.5101,0,-125.118	0/1:73:54,19:54:1923:19:676:-38.8595,0,-151.346	0/1:60:52,8:52:1852:8:288:-8.13957,0,-148.653	0/1:18:7,11:7:248:11:366:-27.7654,0,-17.2423	0/1:40:33,7:33:1188:7:240:-9.09223,0,-95.1792	0/1:104:68,35:68:2427:35:1221:-78.7381,0,-187.472	0/1:110:71,37:71:2539:37:1313:-85.3052,0,-195.8	0/1:110:80,30:80:2837:30:1065:-62.5791,0,-222.352	0/1:114:37,77:37:1320:77:2646:-203.343,0,-84.783	0/1:86:41,45:41:1468:45:1597:-117.057,0,-106.528	0/1:73:13,60:13:453:60:2114:-168.162,0,-19.1244	0/1:222:152,70:152:5402:70:2403:-148.52,0,-419.275	0/1:184:71,113:71:2548:113:4011:-304.744,0,-174.162	0/1:42:34,8:34:1216:8:288:-13.2168,0,-97.0987	0/1:196:132,64:132:4713:64:2251:-142.337,0,-365.073	0/1:196:140,56:140:4985:56:1900:-109.639,0,-389.656	0/1:131:78,53:78:2749:53:1881:-129.623,0,-207.572	0/1:9:4,5:4:144:5:150:-11.0616,0,-10.6043	0/1:32:18,14:18:636:14:485:-33.1412,0,-47.9332	0/1:11:8,3:8:288:3:108:-6.55032,0,-22.9561	0/1:8:2,6:2:72:6:212:-16.9453,0,-4.42848	0/1:15:11,4:11:396:4:144:-8.70159,0,-31.4673	0/1:187:148,39:148:5291:39:1381:-67.8231,0,-419.922	0/1:157:93,64:93:3323:64:2223:-151.75,0,-251.883	0/1:32:21,11:21:756:11:369:-23.6486,0,-58.6801	0/1:6:1,5:1:36:5:180:-14.7224,0,-1.79209	0/1:198:94,104:94:3304:104:3547:-258.712,0,-237.945	0/1:58:52,6:52:1855:6:193:-0.076081,0,-149.765	0/1:133:86,46:86:3057:46:1610:-104.776,0,-235.376	0/1:56:40,16:40:1432:16:572:-34.9195,0,-112.315	0/1:52:37,15:37:1300:15:532:-32.4068,0,-101.635	0/1:70:17,53:17:612:53:1866:-146.202,0,-34.3404	0/1:123:63,60:63:2260:60:2118:-153.218,0,-166.547	0/1:146:56,90:56:2004:90:3130:-236.874,0,-136.669	0/1:59:38,21:38:1345:21:741:-49.1095,0,-103.392	0/1:97:60,37:60:2143:37:1294:-87.3938,0,-163.932	0/1:125:44,81:44:1541:81:2873:-219.09,0,-101.347	0/1:10:3,7:3:93:7:252:-20.0021,0,-5.66643	0/1:205:90,115:90:3236:115:4027:-299.555,0,-229.559	0/1:56:20,36:20:720:36:1253:-94.4792,0,-48.2611	0/0:11:10,1:10:360:1:32:0,-0.115648,-29.5033	0/1:124:63,61:63:2268:61:2169:-157.633,0,-167.054	0/1:43:29,14:29:1035:14:474:-30.0077,0,-80.5141	0/1:4:1,3:1:36:3:93:-7.45545,0,-2.39415	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.87105	0/1:123:86,37:86:3026:37:1324:-81.8914,0,-235.41	0/1:178:116,62:116:4145:62:2191:-143.467,0,-319.536	0/1:5:3,2:3:108:2:72:-5.32664,0,-8.57002	0/1:161:123,38:123:4399:38:1354:-72.1134,0,-347.582	0/1:101:65,36:65:2317:36:1277:-84.5194,0,-178.279	0/1:50:35,15:35:1237:15:540:-33.6245,0,-96.5661	0/1:69:26,43:26:932:43:1525:-115.696,0,-63.4269	0/1:111:56,55:56:2008:55:1898:-137.548,0,-147.567	0/1:197:156,41:156:5565:41:1442:-70.342,0,-441.628	0/1:47:27,20:27:972:20:720:-50.888,0,-73.6394	0/1:85:43,42:43:1516:42:1504:-109.308,0,-110.11	0/1:70:46,24:46:1648:24:844:-54.9518,0,-127.509	0/1:23:17,6:17:581:6:216:-12.8525,0,-45.6835	0/1:153:50,103:50:1781:103:3656:-280.047,0,-114.496	0/1:46:28,18:28:991:18:633:-43.306,0,-75.6467	0/1:163:53,110:53:1900:110:3894:-300.165,0,-122.204	0/1:174:53,121:53:1893:121:4299:-333.927,0,-118.26	0/1:134:72,62:72:2559:62:2164:-152.946,0,-190.194	0/1:127:69,58:69:2459:58:2064:-146.15,0,-183.09	0/1:17:7,10:7:252:10:360:-27.5445,0,-17.8577	0/1:112:39,73:39:1396:73:2536:-193.89,0,-91.4457	0/1:70:47,23:47:1688:23:813:-52.1386,0,-130.932	0/1:128:56,72:56:1993:72:2580:-193.16,0,-141.087	0/1:101:80,21:80:2854:21:748:-37.0289,0,-226.69	0/1:59:36,23:36:1275:23:824:-55.827,0,-97.2868	0/1:31:20,11:20:712:11:388:-25.7249,0,-55.0724	0/1:153:91,62:91:3219:62:2208:-152.615,0,-243.792	0/1:17:11,6:11:392:6:212:-14.2625,0,-30.5025	0/1:109:86,23:86:3076:23:813:-40.5083,0,-244.201	0/1:82:41,41:41:1467:41:1436:-103.986,0,-107.426	0/1:61:41,20:41:1443:20:692:-44.0292,0,-111.781	0/1:100:71,29:71:2528:29:1024:-62.039,0,-197.648	0/1:51:39,12:39:1396:12:411:-21.9434,0,-110.496	0/1:154:65,89:65:2317:89:3122:-234.165,0,-162.327	0/1:99:52,47:52:1852:47:1636:-117.477,0,-137.079
chr09	14400169	.	A	C	16529.5	PASS	AB=0.488576;ABP=5.34223;AC=60;AF=0.326087;AN=184;AO=1011;CIGAR=1X;DP=3307;DPB=3307;DPRA=0.956306;EPP=2172.39;EPPR=4936.69;GTI=2;LEN=1;MEANALT=1.01667;MQM=59.9842;MQMR=59.9769;NS=92;NUMALT=1;ODDS=0.187779;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35962;QR=82114;RO=2292;RPL=3;RPP=2172.39;RPPR=4936.69;RPR=1008;RUN=1;SAF=1011;SAP=2198.37;SAR=0;SRF=2292;SRP=4980.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:11,19:11:396:19:663:-50.9626,0,-26.9518	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:61:60,1:60:2152:1:36:0,-14.7646,-190.349	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:30:11,19:11:396:19:676:-52.1371,0,-26.9518	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:42:24,18:24:864:18:640:-45.2861,0,-65.4393	0/1:41:27,14:27:968:14:496:-32.632,0,-75.0951	0/1:19:13,6:13:460:6:212:-13.7052,0,-36.0158	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:67:41,26:41:1472:26:927:-63.5702,0,-112.607	0/1:33:21,12:21:756:12:428:-28.9248,0,-58.4332	0/1:33:16,17:16:576:17:608:-45.118,0,-42.241	0/1:29:22,7:22:788:7:248:-13.9343,0,-62.5149	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:30:11,19:11:381:19:680:-52.4983,0,-25.5897	0/1:76:45,31:45:1597:31:1095:-75.9808,0,-121.121	0/1:22:5,17:5:180:17:604:-48.0679,0,-9.9294	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:24:13,11:13:468:11:383:-27.5785,0,-35.2349	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8446	0/1:83:42,41:42:1512:41:1458:-106.528,0,-111.199	0/0:103:102,0:102:3664:0:0:0,-30.7051,-329.603	0/1:19:12,7:12:428:7:252:-17.3094,0,-33.1392	0/1:49:23,26:23:824:26:932:-69.4484,0,-59.7328	0/1:78:35,43:35:1244:43:1540:-115.411,0,-88.7843	0/1:43:22,21:22:792:21:756:-55.4229,0,-58.6164	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:159:84,75:84:3016:75:2674:-193.041,0,-223.807	0/1:32:19,13:19:684:13:456:-31.7403,0,-52.2574	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	.:.:.:.:.:.:.:.	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/1:23:11,12:11:392:12:424:-31.5727,0,-28.6964	0/1:47:26,21:26:924:21:734:-52.232,0,-69.3292	0/1:27:16,11:16:561:11:392:-27.4922,0,-42.6893	0/1:35:26,9:26:932:9:320:-18.6063,0,-73.6628	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.537	0/1:46:30,16:30:1068:16:576:-38.3276,0,-82.5847	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:51:25,26:25:896:26:923:-68.0342,0,-65.6078	0/1:15:7,8:7:252:8:270:-20.1129,0,-18.5135	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:17:8,9:8:284:9:316:-23.6613,0,-20.7858	0/1:85:41,44:41:1476:44:1567:-115.733,0,-107.549	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:53:26,27:26:932:27:952:-70.0406,0,-68.2443	0/1:43:22,21:22:792:21:756:-55.4229,0,-58.6614	0/1:29:12,17:12:432:17:608:-46.3222,0,-30.4913	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:49:28,21:28:1004:21:744:-52.5339,0,-75.9254	0/1:71:21,49:21:756:49:1760:-137.291,0,-46.9734	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:34:23,11:23:828:11:383:-24.5682,0,-64.6091	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:33:15,18:15:540:18:639:-47.9043,0,-39.0025	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	.:.:.:.:.:.:.:.	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:20:2,18:2:72:18:639:-51.8176,0,-0.816122	0/0:75:74,0:74:2644:0:0:0,-22.2762,-237.847	0/1:62:31,31:31:1112:31:1108:-81.3671,0,-81.7275	0/0:25:24,0:24:856:0:0:0,-7.22472,-77.0014	0/1:11:5,6:5:180:6:207:-15.6556,0,-13.2407	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.582	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/1:35:15,20:15:525:20:714:-54.0509,0,-37.042	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:58:31,27:31:1112:27:940:-67.4514,0,-82.9316	0/1:48:11,37:11:396:37:1306:-103.391,0,-21.5333	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324
chr09	14400211	.	C	T	44264.5	PASS	AB=0.504921;ABP=3.43776;AC=124;AF=0.673913;AN=184;AO=2225;CIGAR=1X;DP=3237;DPB=3237;DPRA=7.1033;EPP=4834.54;EPPR=2198.37;GTI=2;LEN=1;MEANALT=1.01099;MQM=59.9766;MQMR=59.9822;NS=92;NUMALT=1;ODDS=0.690952;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78944;QR=35619;RO=1011;RPL=2225;RPP=4834.54;RPPR=2198.37;RPR=0;RUN=1;SAF=2225;SAP=4834.54;SAR=0;SRF=1011;SRP=2198.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:18,11:18:624:11:377:-25.5281,0,-47.7516	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	1/1:40:0,40:0:0:40:1411:-127.287,-12.0412,0	1/1:60:1,59:1:36:59:2076:-183.51,-14.4635,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:30:19,11:19:676:11:392:-26.5892,0,-52.1371	1/1:36:0,36:0:0:36:1247:-112.528,-10.8371,0	0/1:43:19,24:19:680:24:855:-64.3259,0,-48.5849	0/1:40:12,27:12:415:27:964:-74.9769,0,-25.5814	0/1:19:6,13:6:212:13:455:-35.5624,0,-13.7052	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	1/1:54:0,54:0:0:54:1886:-170.015,-16.2556,0	0/1:63:26,37:26:928:37:1316:-99.7769,0,-64.8701	0/1:33:12,21:12:432:21:734:-56.4464,0,-29.2872	0/1:33:17,16:17:575:16:576:-42.241,0,-42.1329	0/1:29:7,22:7:248:22:784:-62.154,0,-13.9343	0/1:10:4,6:4:144:6:207:-15.9566,0,-10.3033	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:31:19,12:19:663:12:415:-28.3484,0,-50.6615	0/1:73:32,41:32:1122:41:1463:-109.99,0,-79.3111	0/1:22:16,6:16:564:6:216:-13.1679,0,-44.4676	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:23:10,13:10:356:13:456:-34.4495,0,-25.4576	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:82:41,41:41:1457:41:1463:-107.091,0,-106.739	1/1:96:0,96:0:0:96:3410:-307.117,-28.8989,0	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:48:26,22:26:932:22:784:-56.4345,0,-69.7494	0/1:72:39,33:39:1379:33:1180:-84.8339,0,-102.734	0/1:40:20,20:20:707:20:716:-52.6815,0,-51.9134	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:8:6,2:6:203:2:72:-4.42848,0,-16.1929	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:164:80,84:80:2786:84:3008:-221.582,0,-201.61	0/1:31:13,18:13:442:18:635:-48.145,0,-30.7723	0/1:21:11,10:11:396:10:352:-25.6818,0,-29.6611	.:.:.:.:.:.:.:.	1/1:19:0,19:0:0:19:661:-59.8116,-5.71957,0	0/1:22:11,11:11:383:11:387:-28.5433,0,-28.1806	0/1:44:19,25:19:680:25:875:-65.8208,0,-48.2838	0/1:26:11,15:11:383:15:528:-40.0246,0,-26.9765	0/1:34:9,25:9:320:25:896:-70.7253,0,-18.9073	1/1:49:0,49:0:0:49:1739:-156.794,-14.7505,0	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	1/1:38:0,38:0:0:38:1360:-122.7,-11.4391,0	0/1:45:16,29:16:572:29:1029:-79.3762,0,-38.2671	0/1:18:8,10:8:288:10:348:-26.2366,0,-20.8489	1/1:78:0,78:0:0:78:2764:-249.001,-23.4803,0	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/1:52:26,26:26:924:26:909:-66.4698,0,-67.8241	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:86:44,42:44:1552:42:1492:-108.685,0,-114.08	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:52:26,26:26:906:26:936:-68.9059,0,-66.1974	0/1:47:24,23:24:824:23:812:-59.2525,0,-60.3241	0/1:28:17,11:17:588:11:392:-27.1912,0,-44.8134	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	0/1:48:21,27:21:739:27:964:-72.6274,0,-52.3829	0/1:71:50,21:50:1784:21:752:-46.6331,0,-139.47	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:34:11,23:11:383:23:828:-64.6091,0,-24.5682	0/1:12:2,10:2:57:10:356:-28.7689,0,-1.80095	1/1:75:0,75:0:0:75:2653:-239.016,-22.5773,0	0/1:36:21,15:21:717:15:527:-36.9231,0,-54.0054	1/1:62:0,62:0:0:62:2208:-198.985,-18.6639,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:28:16,12:16:552:12:419:-29.6138,0,-41.574	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	.:.:.:.:.:.:.:.	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	0/1:19:17,2:17:582:2:68:-0.738138,0,-46.9818	1/1:76:0,76:0:0:76:2694:-242.702,-22.8783,0	0/1:61:32,29:32:1143:29:1005:-72.3954,0,-84.8159	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	1/1:83:0,83:0:0:83:2949:-265.643,-24.9855,0	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	0/1:35:20,15:20:712:15:527:-37.2241,0,-53.8706	1/1:46:0,46:0:0:46:1597:-144.014,-13.8474,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:57:27,30:27:954:30:1059:-78.4617,0,-69.0153	0/1:49:38,11:38:1343:11:388:-20.5069,0,-106.419	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0
chr09	14534046	.	T	C	113886	PASS	AB=0.623358;ABP=646.966;AC=137;AF=0.728723;AN=188;AO=5652;CIGAR=1X;DP=7501;DPB=7501;DPRA=0;EPP=12276.2;EPPR=4009.38;GTI=2;LEN=1;MEANALT=1.04255;MQM=53.3096;MQMR=59.9805;NS=94;NUMALT=1;ODDS=2.2062;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201266;QR=66012;RO=1845;RPL=0;RPP=12276.2;RPPR=4009.38;RPR=5652;RUN=1;SAF=0;SAP=12276.2;SAR=5652;SRF=0;SRP=4009.38;SRR=1845;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:808:-72.9423,-6.92369,0	1/1:71:0,71:0:0:71:2540:-228.251,-21.3731,0	1/1:31:0,31:0:0:31:1108:-99.7933,-9.33193,0	1/1:175:0,175:0:0:175:6268:-561.09,-52.6803,0	0/1:37:17,20:17:608:20:716:-53.485,0,-43.9139	0/1:80:30,50:30:1076:50:1794:-136.743,0,-73.0705	0/1:219:83,136:83:2972:136:4862:-368.94,0,-201.787	0/1:102:42,60:42:1500:60:2152:-162.746,0,-104.59	0/1:83:28,55:28:1004:55:1968:-152.107,0,-65.6904	1/1:44:0,44:0:0:44:1580:-141.918,-13.2453,0	0/1:70:27,43:27:968:43:1536:-116.934,0,-66.3653	1/1:58:0,58:0:0:58:2068:-185.412,-17.4597,0	0/1:77:29,48:29:1040:48:1692:-129.027,0,-70.7351	0/1:83:31,52:31:1108:52:1852:-141.684,0,-75.0455	0/1:103:35,68:35:1260:68:2428:-187.21,0,-82.6994	0/1:71:29,42:29:1040:42:1496:-113.316,0,-72.5412	0/1:80:29,51:29:1040:51:1801:-137.908,0,-69.832	0/1:70:17,53:17:608:53:1880:-147.08,0,-33.9799	1/1:31:0,31:0:0:31:1097:-98.9639,-9.33193,0	0/1:172:79,93:79:2828:93:3311:-245.335,0,-202.979	1/1:82:0,82:0:0:82:2915:-261.662,-24.6845,0	0/1:183:87,96:87:3117:96:3410:-251.406,0,-225.666	1/1:75:1,74:1:36:74:2649:-233.858,-18.979,0	0/1:117:52,65:52:1864:65:2336:-174.98,0,-132.817	1/1:31:0,31:0:0:31:1089:-97.8135,-9.33193,0	0/1:410:164,246:164:5888:246:8800:-666.821,0,-406.448	0/1:156:50,106:50:1777:106:3773:-291.528,0,-113.25	0/1:50:18,32:18:644:32:1128:-86.6383,0,-43.2391	0/1:313:145,168:145:5180:168:5981:-442.127,0,-372.119	1/1:82:0,82:0:0:82:2913:-261.595,-24.6845,0	0/1:108:43,65:43:1513:65:2331:-176.725,0,-103.95	1/1:6:0,6:0:0:6:216:-19.7257,-1.80618,0	0/1:28:9,19:9:320:19:650:-50.1871,0,-20.7135	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:9:1,8:1:36:8:288:-23.5416,0,-0.889005	1/1:8:0,8:0:0:8:288:-26.2261,-2.40824,0	0/1:257:82,175:82:2935:175:6224:-481.61,0,-187.018	1/1:99:0,99:0:0:99:3536:-317.272,-29.802,0	0/1:85:27,58:27:964:58:2058:-159.648,0,-61.4893	1/1:2:0,2:0:0:2:72:-6.82552,-0.60206,0	1/1:91:3,88:3:108:88:3137:-271.112,-17.3186,0	1/1:57:0,57:0:0:57:2014:-181.33,-17.1587,0	0/1:83:21,62:21:752:62:2203:-172.295,0,-43.0208	0/1:77:23,54:23:820:54:1928:-150.017,0,-50.9432	0/1:76:24,52:24:864:52:1843:-142.646,0,-55.2043	1/1:98:0,97:0:0:97:3476:-309.532,-29.1999,0	0/1:97:31,66:31:1116:66:2336:-180.793,0,-71.5509	1/1:59:0,59:0:0:59:2109:-188.87,-17.7608,0	1/1:57:0,57:0:0:57:2036:-182.479,-17.1587,0	0/1:102:28,73:28:1008:73:2612:-203.39,0,-60.2736	1/1:120:0,120:0:0:120:4280:-383.753,-36.1236,0	0/1:7:5,2:5:176:2:72:-4.71505,0,-14.0778	1/1:55:0,55:0:0:55:1976:-177.489,-16.5567,0	1/1:33:0,33:0:0:33:1184:-106.157,-9.93399,0	0/1:20:11,9:11:396:9:324:-23.3957,0,-29.9621	1/1:83:0,83:0:0:83:2975:-267.303,-24.9855,0	0/1:50:25,25:25:900:25:891:-65.2341,0,-66.2695	0/1:3:1,2:1:36:2:72:-5.7591,0,-2.69518	0/1:19:13,6:13:468:6:216:-14.026,0,-36.7401	0/1:54:24,30:24:860:30:1059:-78.9557,0,-61.4653	0/1:164:53,111:53:1908:111:3934:-303.572,0,-122.629	0/1:6:3,3:3:108:3:108:-8.22636,0,-8.26899	0/1:152:68,84:68:2409:84:3000:-224.009,0,-171.309	1/1:71:5,66:5:180:66:2338:-193.587,-4.82107,0	0/1:27:16,11:16:572:11:387:-26.9416,0,-43.6856	1/1:63:2,61:2:72:61:2172:-187.432,-12.1282,0	0/1:166:74,91:74:2648:91:3221:-238.962,0,-188.537	1/1:92:0,92:0:0:92:3264:-293.351,-27.6948,0	1/1:27:0,27:0:0:27:942:-84.6151,-8.12781,0	1/1:42:0,42:0:0:42:1508:-135.313,-12.6433,0	0/1:112:25,87:25:892:87:3102:-245.245,0,-46.8843	0/1:12:3,9:3:108:9:324:-25.8103,0,-6.46281	1/1:78:0,78:0:0:78:2792:-250.268,-23.4803,0	0/1:36:13,23:13:464:23:824:-63.5562,0,-31.2604	1/1:109:0,109:0:0:109:3872:-346.937,-32.8123,0	1/1:26:0,26:0:0:26:936:-83.9967,-7.82678,0	0/1:42:13,29:13:464:29:1040:-80.9059,0,-29.4542	1/1:49:0,49:0:0:49:1735:-154.799,-14.7505,0	1/1:14:1,13:1:36:13:468:-38.5716,-0.616145,0	1/1:27:0,27:0:0:27:951:-85.4303,-8.12781,0	0/1:100:49,51:49:1733:51:1824:-134.088,0,-126.15	1/1:122:0,122:0:0:122:4333:-387.83,-36.7257,0	1/1:90:0,90:0:0:90:3164:-284.244,-27.0927,0	1/1:34:0,34:0:0:34:1211:-108.661,-10.235,0	0/1:87:22,65:22:784:65:2281:-178.712,0,-44.6943	1/1:108:0,108:0:0:108:3804:-340.569,-32.5112,0	0/1:70:22,48:22:788:48:1716:-133.37,0,-50.1727	0/1:86:27,59:27:968:59:2081:-161.295,0,-61.5488	1/1:58:0,58:0:0:58:2067:-184.676,-17.4597,0	0/1:48:18,30:18:648:30:1068:-80.628,0,-44.2024	0/1:135:45,90:45:1612:90:3202:-246.615,0,-104.731	0/1:78:22,56:22:788:56:1987:-155.393,0,-47.7645	1/1:60:0,60:0:0:60:2160:-193.867,-18.0618,0	1/1:86:0,85:0:0:85:3021:-270.377,-25.5876,0
chr09	14534057	.	G	A	75300.6	PASS	AB=0.385402;ABP=650.011;AC=123;AF=0.654255;AN=188;AO=3980;CIGAR=1X;DP=7474;DPB=7474;DPRA=0;EPP=8157.47;EPPR=7335.99;GTI=4;LEN=1;MEANALT=1.02128;MQM=50.5681;MQMR=59.8943;NS=94;NUMALT=1;ODDS=2.60597;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142385;QR=124197;RO=3492;RPL=57;RPP=8157.47;RPPR=7335.99;RPR=3923;RUN=1;SAF=0;SAP=8645.47;SAR=3980;SRF=0;SRP=7585.79;SRR=3492;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:9,14:9:320:14:500:-38.3025,0,-22.2168	1/1:70:0,70:0:0:70:2512:-225.73,-21.0721,0	1/1:31:0,31:0:0:31:1112:-100.149,-9.33193,0	1/1:170:0,170:0:0:170:6088:-544.681,-51.1751,0	0/1:38:23,15:23:828:15:540:-37.3395,0,-63.4034	0/1:76:50,26:50:1779:26:932:-60.3637,0,-137.513	0/1:217:83,134:83:2972:134:4804:-364.308,0,-202.389	0/1:100:61,39:61:2188:39:1381:-93.9954,0,-167.082	0/1:81:54,27:54:1912:27:972:-63.1957,0,-147.968	0/1:42:17,25:17:612:25:892:-67.426,0,-42.7702	0/1:69:52,17:52:1848:17:612:-34.119,0,-145.826	1/1:58:0,58:0:0:58:2071:-185.676,-17.4597,0	0/1:78:56,22:56:1961:22:792:-47.7629,0,-152.852	0/1:85:55,30:55:1946:30:1076:-71.2583,0,-149.827	0/1:105:77,28:77:2756:28:1008:-58.829,0,-216.674	0/1:71:48,23:48:1709:23:828:-53.2251,0,-132.718	0/1:76:53,23:53:1859:23:824:-51.2338,0,-144.683	0/1:71:17,54:17:597:54:1936:-151.493,0,-32.683	0/1:32:21,11:21:733:11:396:-26.2666,0,-56.6567	0/1:171:121,50:121:4340:50:1792:-108.995,0,-339.291	0/1:81:30,51:30:1071:51:1832:-139.828,0,-72.3162	0/1:185:144,40:144:5113:40:1423:-72.1454,0,-404.71	1/1:74:1,73:1:36:73:2624:-231.503,-18.6779,0	0/1:117:88,29:88:3152:29:1044:-58.7553,0,-248.683	1/1:30:0,30:0:0:30:1072:-96.2796,-9.0309,0	0/1:402:249,153:249:8861:153:5467:-369.646,0,-676.408	0/1:155:52,103:52:1856:103:3696:-284.903,0,-120.66	0/1:50:36,14:36:1263:14:504:-30.4993,0,-98.9144	0/1:311:203,108:203:7220:108:3847:-250.136,0,-556.234	0/1:81:44,37:44:1584:37:1316:-93.546,0,-118.467	0/1:107:80,27:80:2853:27:972:-54.788,0,-224.796	1/1:6:0,6:0:0:6:216:-19.7257,-1.80618,0	0/1:29:17,12:17:604:12:432:-30.0491,0,-45.9607	1/1:2:0,2:0:0:2:57:-5.40444,-0.60206,0	0/1:9:7,2:7:252:2:72:-4.11026,0,-20.3197	0/1:8:3,5:3:108:5:180:-14.1022,0,-7.66693	0/1:253:169,84:169:6000:84:3005:-193.345,0,-463.942	0/1:100:53,47:53:1900:47:1684:-121.039,0,-140.547	0/1:84:54,30:54:1897:30:1067:-70.6414,0,-145.714	0/1:2:1,1:1:36:1:36:-2.98442,0,-2.99621	1/1:86:3,83:3:108:83:2957:-254.394,-15.8134,0	0/1:56:36,20:36:1292:20:716:-47.7079,0,-99.7214	0/1:80:38,42:38:1360:42:1498:-110.382,0,-98.6167	0/1:77:46,31:46:1652:31:1116:-76.9475,0,-125.789	0/1:77:52,25:52:1851:25:887:-56.2258,0,-143.689	1/1:99:0,99:0:0:99:3540:-315.684,-29.802,0	0/1:94:53,41:53:1908:41:1468:-103.62,0,-143.698	1/1:62:0,62:0:0:62:2224:-199.03,-18.6639,0	0/1:57:30,27:30:1071:27:972:-69.6254,0,-79.4708	0/1:102:59,43:59:2112:43:1539:-106.945,0,-159.642	1/1:119:0,119:0:0:119:4269:-382.901,-35.8226,0	0/1:7:6,1:6:216:1:36:-1.47584,0,-17.6833	1/1:52:0,52:0:0:52:1872:-168.153,-15.6536,0	1/1:34:0,34:0:0:34:1193:-107.049,-10.235,0	0/1:19:14,5:14:504:5:180:-10.742,0,-39.9785	0/1:86:32,54:32:1139:54:1928:-147.304,0,-76.9298	0/1:53:34,19:34:1212:19:665:-43.9723,0,-93.4224	0/1:3:1,2:1:36:2:72:-5.7591,0,-2.69518	0/1:19:14,5:14:480:5:180:-10.7884,0,-37.8033	0/1:52:32,20:32:1135:20:711:-48.3628,0,-86.8036	0/1:167:113,54:113:4030:54:1944:-123.594,0,-312.614	0/1:6:3,3:3:108:3:108:-8.22636,0,-8.26899	0/1:155:98,57:98:3503:57:2040:-136.743,0,-268.82	0/1:70:32,38:32:1136:38:1334:-98.8104,0,-81.4768	0/1:27:18,9:18:644:9:324:-21.2813,0,-50.1628	1/1:63:2,61:2:68:61:2173:-187.879,-12.5072,0	0/1:162:116,46:116:4125:46:1656:-99.2076,0,-322.656	0/1:88:55,33:55:1971:33:1180:-79.4703,0,-151.171	1/1:26:1,25:1:36:25:900:-77.0242,-4.22851,0	1/1:45:0,45:0:0:45:1589:-142.593,-13.5464,0	0/1:112:76,36:76:2658:36:1296:-82.7795,0,-205.743	0/1:10:5,5:5:180:5:180:-13.4717,0,-13.5418	1/1:80:0,80:0:0:80:2855:-255.573,-24.0824,0	0/1:36:25,11:25:892:11:396:-25.0552,0,-69.7626	1/1:108:0,108:0:0:108:3880:-347.619,-32.5112,0	1/1:27:0,27:0:0:27:955:-85.7168,-8.12781,0	0/1:45:20,25:20:720:25:892:-66.4941,0,-51.5824	1/1:49:0,49:0:0:49:1756:-156.277,-14.7505,0	1/1:14:1,13:1:36:13:468:-38.5716,-0.616145,0	1/1:27:0,27:0:0:27:953:-85.7119,-8.12781,0	0/1:99:67,31:67:2351:31:1112:-70.2916,0,-181.987	1/1:123:0,123:0:0:123:4412:-394.883,-37.0267,0	0/1:91:46,45:46:1589:45:1590:-115.241,0,-115.891	1/1:34:0,34:0:0:34:1224:-109.812,-10.235,0	0/1:86:55,31:55:1954:31:1100:-72.8155,0,-150.24	1/1:110:0,110:0:0:110:3901:-349.131,-33.1133,0	0/1:74:46,28:46:1629:28:1004:-68.1604,0,-124.612	0/1:87:59,28:59:2093:28:1000:-63.6877,0,-162.447	1/1:58:0,58:0:0:58:2088:-186.544,-17.4597,0	0/1:48:18,30:18:635:30:1067:-80.641,0,-43.0275	0/1:138:97,41:97:3437:41:1475:-90.2443,0,-267.99	0/1:80:61,19:61:2160:19:684:-37.5461,0,-170.579	1/1:60:0,60:0:0:60:2156:-193.515,-18.0618,0	1/1:85:0,85:0:0:85:3056:-273.698,-25.5876,0
chr09	14534087	.	ATG	GTA,ATA	154135	PASS	AB=0.386328,0.612971;ABP=643.303,635.429;AC=124,64;AF=0.659574,0.340426;AN=188;AO=4020,3504;CIGAR=1X1M1X,2M1X;DP=7530;DPB=7530.67;DPRA=0,1.44103;EPP=8732.33,7611.85;EPPR=0;GTI=4;LEN=3,1;MEANALT=1.78723,2.05882;MQM=50.5022,59.891;MQMR=0;NS=94;NUMALT=2;ODDS=4.214;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=72,0;PQR=0;PRO=0;QA=143009,125542;QR=0;RO=0;RPL=4020,3504;RPP=8732.33,7611.85;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8732.33,7611.85;SAR=4020,3504;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,14,10:0:0:14,10:504,352:-70.0201,-29.0061,-24.7916,-41.3688,0,-38.3585	1/1:72:0,72,0:0:0:72,0:2577,0:-231.517,-21.6742,0,-231.517,-21.6742,-231.517	1/1:30:0,30,0:0:0:30,0:1068,0:-96.1994,-9.0309,0,-96.1994,-9.0309,-96.1994	1/1:174:0,174,0:0:0:174,0:6195,0:-554.233,-52.3792,0,-554.233,-52.3792,-554.233	1/2:38:0,15,23:0:0:15,23:540,828:-111.823,-67.9189,-63.4034,-44.2632,0,-37.3395	1/2:78:0,27,51:0:0:27,51:956,1832:-226.748,-149.808,-141.68,-77.2933,0,-61.9408	1/2:220:0,136,84:0:0:136,84:4846,2989:-636.163,-243.955,-203.015,-392.563,0,-367.277	1/2:101:0,39,62:0:0:39,62:1388,2213:-293.403,-180.768,-169.028,-112.99,0,-94.3262	1/2:82:0,27,55:0:0:27,55:963,1972:-239.49,-161.195,-153.067,-78.6518,0,-62.0951	1/2:43:0,26,17:0:0:26,17:920,612:-124.689,-50.2959,-42.4691,-74.7498,0,-69.6323	1/2:73:0,18,55:0:0:18,55:646,1976:-213.723,-161.558,-156.139,-52.5209,0,-35.9642	1/1:59:0,59,0:0:0:59,0:2091,0:-187.618,-17.7608,0,-187.618,-17.7608,-187.618	1/2:77:0,22,55:0:0:22,55:792,1976:-225.392,-161.129,-154.506,-64.6206,0,-48.064	1/2:87:0,31,56:0:0:31,56:1091,2012:-253.004,-164.495,-155.163,-88.8624,0,-72.0047	1/2:102:0,29,73:0:0:29,73:1040,2628:-299.03,-214.791,-206.061,-84.5955,0,-62.6204	1/2:72:0,23,49:0:0:23,49:826,1745:-209.725,-142.581,-135.657,-67.5012,0,-52.7508	1/2:79:0,24,55:0:0:24,55:848,1976:-230.235,-161.536,-154.311,-69.0531,0,-52.4964	1/2:67:0,50,17:0:0:50,17:1795,612:-194.992,-50.2959,-35.2444,-145.054,0,-139.937	1/2:32:0,10,22:0:0:10,22:358,788:-93.7381,-64.6221,-61.6118,-29.4733,0,-22.8506	1/2:176:0,52,124:0:0:52,124:1849,4424:-510.719,-361,-345.346,-150.073,0,-112.746	1/2:81:0,51,30:0:0:51,30:1826,1080:-236.445,-88.4804,-73.1279,-148.323,0,-139.292	1/2:184:0,40,144:0:0:40,144:1416,5168:-536.503,-421.906,-409.865,-114.95,0,-71.6017	1/1:76:0,75,1:0:0:75,1:2647,32:-236.904,-22.5773,0,-234.326,-19.679,-234.025	1/2:116:0,30,86:0:0:30,86:1068,3096:-339.727,-252.976,-243.945,-87.107,0,-61.2184	1/1:31:0,30,0:0:0:30,0:1053,0:-94.2159,-9.0309,0,-94.2159,-9.0309,-94.2159	1/2:402:0,155,247:0:0:155,247:5517,8837:-1168.97,-720.929,-674.269,-448.393,0,-374.039	1/2:156:0,106,50:0:0:106,50:3779,1788:-452.904,-146.151,-114.242,-307.11,0,-292.058	1/2:51:0,14,37:0:0:14,37:504,1328:-149.659,-108.681,-104.467,-41.3364,0,-30.1983	1/2:312:0,108,203:0:0:108,203:3807,7295:-902.314,-595.148,-562.636,-307.179,0,-246.07	1/2:82:0,37,45:0:0:37,45:1293,1612:-236.305,-131.822,-120.684,-104.835,0,-91.289	1/2:107:0,29,78:0:0:29,78:1029,2796:-311.447,-228.4,-219.67,-83.4011,0,-59.9208	1/1:6:0,6,0:0:0:6,0:214,0:-19.5468,-1.80618,0,-19.5468,-1.80618,-19.5468	1/2:28:0,11,17:0:0:11,17:387,608:-81.0222,-49.9345,-46.6232,-31.4391,0,-26.3216	1/1:2:0,2,0:0:0:2,0:72,0:-6.81953,-0.60206,0,-6.81953,-0.60206,-6.81953	1/2:9:0,2,7:0:0:2,7:72,252:-26.7801,-20.9217,-20.3197,-6.21747,0,-4.11026	1/2:8:0,5,3:0:0:5,3:175,108:-23.3683,-9.17208,-7.66693,-14.5521,0,-13.649	1/2:255:0,85,170:0:0:85,170:3044,6112:-746.012,-498.999,-473.411,-247.371,0,-196.196	1/2:101:0,48,53:0:0:48,53:1706,1904:-293.387,-155.055,-140.606,-138.687,0,-122.733	1/2:84:0,29,55:0:0:29,55:1042,1976:-246.146,-161.555,-152.825,-84.9486,0,-68.392	1/2:2:0,1,1:0:0:1,1:36,36:-6.22346,-3.29724,-2.99621,-3.28545,0,-2.98442	1/1:92:0,89,3:0:0:89,3:3138,104:-280.588,-26.7917,0,-272.135,-17.992,-271.232	1/2:57:0,21,36:0:0:21,36:750,1296:-167.041,-106.102,-99.7806,-61.2962,0,-50.4591	1/2:83:0,43,40:0:0:43,40:1523,1436:-240.296,-117.495,-104.551,-123.156,0,-111.115	1/2:77:0,31,45:0:0:31,45:1102,1616:-221.096,-131.9,-122.568,-89.2686,0,-75.7222	1/2:75:0,24,51:0:0:24,51:862,1820:-218.359,-148.726,-141.502,-69.9883,0,-54.6358	1/1:100:0,100,0:0:0:100,0:3556,0:-317.756,-30.103,0,-317.756,-30.103,-317.756	1/2:98:0,40,58:0:0:40,58:1428,2080:-285.932,-170.005,-157.964,-116.284,0,-98.8238	1/1:62:0,62,0:0:0:62,0:2216,0:-198.272,-18.6639,0,-198.272,-18.6639,-198.272	1/2:58:0,27,31:0:0:27,31:965,1108:-168.405,-90.6269,-82.4991,-78.1329,0,-68.8009	1/2:101:0,41,59:0:0:41,59:1471,2120:-291.838,-173.024,-160.682,-118.888,0,-101.128	1/1:123:0,123,0:0:0:123,0:4365,0:-391.369,-37.0267,0,-391.369,-37.0267,-391.369	1/2:7:0,1,6:0:0:1,6:36,216:-20.9078,-17.9843,-17.6833,-3.28202,0,-1.47584	1/1:55:0,55,0:0:0:55,0:1943,0:-174.543,-16.5567,0,-174.543,-16.5567,-174.543	1/1:34:0,34,0:0:0:34,0:1210,0:-108.536,-10.235,0,-108.536,-10.235,-108.536	1/2:19:0,4,15:0:0:4,15:144,536:-55.7768,-44.0594,-42.8552,-12.076,0,-7.56058	1/2:85:0,52,32:0:0:52,32:1852,1148:-244.096,-93.7228,-78.0693,-150.457,0,-140.824	1/2:53:0,19,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chr09	14775176	.	A	G	69325.1	PASS	AB=0.481172;ABP=11.8416;AC=127;AF=0.675532;AN=188;AO=2819;CIGAR=1X;DP=4314;DPB=4314;DPRA=0;EPP=857.125;EPPR=723.369;GTI=0;LEN=1;MEANALT=1.01064;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=3.58925;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98929;QR=53156;RO=1494;RPL=0;RPP=6124.39;RPPR=3247.19;RPR=2819;RUN=1;SAF=1936;SAP=857.125;SAR=883;SRF=1099;SRP=723.369;SRR=395;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:48:1,47:1:36:47:1645:-144.738,-10.8512,0	1/1:22:0,22:0:0:22:742:-67.0907,-6.62266,0	0/1:8:6,2:6:207:2:68:-4.04947,0,-16.5587	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	1/1:26:0,26:0:0:26:903:-81.5838,-7.82678,0	0/1:25:9,16:9:320:16:568:-43.9261,0,-21.6166	0/1:36:22,14:22:776:14:500:-34.4991,0,-59.3251	0/1:5:1,4:1:32:4:144:-11.8085,0,-1.69416	0/1:193:97,96:97:3473:96:3416:-249.557,0,-254.681	1/1:47:0,47:0:0:47:1648:-148.608,-14.1484,0	0/1:54:26,28:26:928:28:996:-73.6993,0,-67.5826	0/1:45:21,24:21:743:24:838:-62.1912,0,-53.647	0/1:32:18,14:18:640:14:492:-34.9794,0,-48.2964	0/1:37:19,18:19:669:18:648:-47.5138,0,-49.3958	0/1:32:16,16:16:568:16:572:-42.1805,0,-41.8189	1/1:23:0,23:0:0:23:804:-72.6793,-6.92369,0	0/1:95:52,43:52:1864:43:1503:-106.965,0,-139.442	0/1:24:14,10:14:491:10:323:-22.1578,0,-37.2964	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	1/1:28:0,28:0:0:28:957:-86.4379,-8.42884,0	0/1:21:10,11:10:341:11:376:-27.8477,0,-24.6961	1/1:20:0,20:0:0:20:695:-62.8714,-6.0206,0	0/1:48:20,28:20:708:28:979:-73.9726,0,-49.5962	1/1:34:0,34:0:0:34:1173:-105.872,-10.235,0	0/1:25:14,11:14:496:11:392:-28.0943,0,-37.4485	0/1:44:32,12:32:1123:12:412:-24.1639,0,-88.1318	0/1:15:10,5:10:360:5:176:-11.6696,0,-28.2289	0/1:25:13,12:13:468:12:387:-27.615,0,-34.9339	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	0/1:36:23,13:23:828:13:460:-30.8983,0,-64.007	1/1:127:0,127:0:0:127:4525:-407.418,-38.2308,0	0/1:143:84,59:84:3000:59:2089:-145.231,0,-227.185	0/1:137:79,58:79:2813:58:2042:-142.808,0,-212.167	0/1:99:50,49:50:1784:49:1697:-123.212,0,-131.041	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/1:104:54,50:54:1914:50:1761:-127.464,0,-141.226	0/1:77:42,35:42:1512:35:1222:-87.1002,0,-113.195	1/1:34:0,33:0:0:33:1151:-103.536,-9.93399,0	0/1:46:23,23:23:824:23:820:-60.2751,0,-60.6359	0/1:51:28,23:28:968:23:779:-55.0683,0,-72.0762	0/1:53:20,33:20:712:33:1144:-87.3077,0,-48.4521	0/1:24:17,7:17:574:7:239:-14.618,0,-44.7513	1/1:21:1,20:1:36:20:693:-59.0913,-2.72336,0	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:22:0,22:0:0:22:767:-69.3494,-6.62266,0	0/1:18:7,11:7:252:11:380:-29.1134,0,-17.6104	0/1:11:3,8:3:104:8:261:-20.4967,0,-6.39148	1/1:22:0,22:0:0:22:756:-68.3564,-6.62266,0	0/1:83:44,39:44:1569:39:1391:-100.503,0,-116.514	1/1:26:0,26:0:0:26:920:-83.1171,-7.82678,0	1/1:19:0,19:0:0:19:667:-60.3546,-5.71957,0	0/1:24:6,18:6:216:18:648:-51.4272,0,-12.5658	0/1:22:9,13:9:324:13:429:-32.3042,0,-22.8832	0/1:16:11,5:11:384:5:153:-9.25599,0,-30.0782	0/1:107:66,41:66:2357:41:1472:-100.566,0,-180.177	0/1:55:32,23:32:1144:23:805:-56.2109,0,-86.7129	0/1:29:12,17:12:428:17:584:-44.1523,0,-30.1289	0/1:74:31,43:31:1104:43:1494:-112.473,0,-77.3944	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:23:18,5:18:624:5:165:-8.24991,0,-49.5577	0/1:32:16,16:16:567:16:564:-41.4573,0,-41.7278	0/1:18:8,10:8:288:10:347:-26.1451,0,-20.8489	1/1:21:0,21:0:0:21:686:-62.0461,-6.32163,0	0/1:37:17,20:17:584:20:708:-52.9075,0,-41.7427	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	1/1:175:0,175:0:0:175:6199:-558.01,-52.6803,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:34:12,22:12:415:22:776:-59.9271,0,-27.4453	0/1:23:15,8:15:540:8:288:-19.3437,0,-42.0128	1/1:16:0,16:0:0:16:560:-50.7287,-4.81648,0	0/1:7:4,3:4:140:3:104:-7.5956,0,-10.8374	1/1:49:0,49:0:0:49:1698:-153.102,-14.7505,0	1/1:18:1,17:1:36:17:590:-49.8259,-1.82027,0	0/1:31:13,18:13:464:18:640:-48.5974,0,-32.7656	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:48:19,29:19:684:29:1028:-78.3836,0,-47.4409	1/1:28:1,27:1:36:27:920:-79.5098,-4.83057,0	0/1:36:16,20:16:572:20:689:-51.4909,0,-40.9763	1/1:47:0,47:0:0:47:1605:-144.734,-14.1484,0	0/1:40:13,27:13:468:27:952:-73.954,0,-30.4184	1/1:43:0,43:0:0:43:1520:-137.093,-12.9443,0	0/1:41:17,24:17:585:24:822:-61.9518,0,-40.6297	1/1:70:1,69:1:36:69:2376:-210.5,-17.4738,0	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/1:31:11,20:11:396:20:700:-53.9915,0,-26.6508	1/1:45:0,45:0:0:45:1581:-142.578,-13.5464,0	1/1:176:1,175:1:36:175:6217:-556.03,-49.383,0	0/1:330:174,156:174:6231:156:5526:-398.127,0,-461.545	0/1:37:21,16:21:748:16:559:-39.4995,0,-56.5072	1/1:25:0,25:0:0:25:860:-77.7116,-7.52575,0	1/1:88:0,88:0:0:88:3091:-278.422,-26.4906,0
chr09	15655403	.	A	C	116209	PASS	AB=0.448172;ABP=149.767;AC=123;AF=0.654255;AN=188;AO=6055;CIGAR=1X;DP=9542;DPB=9542;DPRA=51.2903;EPP=13151.3;EPPR=7568.42;GTI=1;LEN=1;MEANALT=1.01075;MQM=48.5414;MQMR=58.8634;NS=94;NUMALT=1;ODDS=0.0603322;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214176;QR=124283;RO=3484;RPL=0;RPP=13151.3;RPPR=3231.66;RPR=6055;RUN=1;SAF=0;SAP=13151.3;SAR=6055;SRF=2880;SRP=3231.66;SRR=604;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:23,41:23:824:41:1432:-108.694,0,-55.2174	1/1:56:0,56:0:0:56:1996:-176.639,-16.8577,0	1/1:102:1,101:1:36:101:3552:-313.816,-27.1136,0	1/1:201:1,200:1:36:200:7071:-625.09,-56.9088,0	0/1:83:42,41:42:1508:41:1430:-101.933,0,-111.025	0/1:74:46,28:46:1647:28:1000:-67.4137,0,-126.242	1/1:135:0,135:0:0:135:4720:-420.138,-40.6391,0	0/1:124:70,54:70:2492:54:1912:-132.917,0,-187.206	0/1:161:81,80:81:2908:80:2848:-205.203,0,-213.489	0/1:87:37,50:37:1328:50:1779:-132.746,0,-93.6326	0/1:34:12,22:12:432:22:780:-59.6305,0,-28.9862	1/1:116:0,116:0:0:116:4104:-365.249,-34.9195,0	0/1:90:43,47:43:1536:47:1680:-123.261,0,-111.432	0/1:53:30,23:30:1063:23:811:-57.0794,0,-80.0262	0/1:99:48,51:48:1711:51:1810:-131.884,0,-124.473	0/1:43:22,21:22:784:21:739:-53.6273,0,-57.9396	0/1:34:20,14:20:716:14:496:-34.3047,0,-54.5327	0/1:32:16,16:16:576:16:572:-41.7105,0,-42.542	0/1:22:14,8:14:500:8:284:-19.1778,0,-38.7135	0/1:120:48,72:48:1724:72:2528:-188.961,0,-119.322	0/1:182:88,94:88:3124:94:3334:-243.654,0,-226.598	0/1:188:147,41:147:5233:41:1459:-74.1483,0,-412.827	1/1:136:1,135:1:36:135:4742:-419.79,-37.3418,0	0/1:76:16,60:16:572:60:2124:-167.727,0,-28.9351	1/1:116:0,116:0:0:116:4121:-367.529,-34.9195,0	0/1:400:264,136:264:9401:136:4803:-307.554,0,-722.489	0/1:250:111,139:111:3955:139:4904:-362.733,0,-280.884	0/1:41:19,22:19:684:22:780:-57.8932,0,-49.5481	0/1:470:306,164:306:10888:164:5785:-373.467,0,-837.19	0/1:157:82,75:82:2939:75:2670:-191.098,0,-217.482	0/1:100:47,53:47:1676:53:1900:-140.267,0,-121.024	1/1:9:0,9:0:0:9:320:-29.0258,-2.70927,0	0/1:15:5,10:5:171:10:356:-27.4771,0,-11.21	1/1:5:0,5:0:0:5:180:-15.4368,-1.50515,0	0/1:7:5,2:5:180:2:72:-4.70058,0,-14.4449	0/1:8:5,3:5:171:3:108:-7.6243,0,-13.3172	0/1:332:212,120:212:7532:120:4254:-278.665,0,-576.256	0/1:99:40,59:40:1432:59:2103:-158.447,0,-99.3756	0/1:50:25,25:25:888:25:888:-64.3479,0,-65.1875	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:149:0,149:0:0:149:5274:-470.99,-44.8535,0	0/1:32:17,15:17:604:15:540:-39.0965,0,-45.0576	0/1:208:92,116:92:3300:116:4135:-305.904,0,-234.604	0/1:73:34,39:34:1212:39:1391:-102.159,0,-87.4111	0/1:82:48,34:48:1707:34:1190:-81.2821,0,-129.231	1/1:130:1,129:1:36:129:4524:-400.292,-36.0794,0	0/1:108:63,45:63:2244:45:1596:-110.338,0,-169.707	1/1:227:2,225:2:72:225:7917:-699.089,-61.499,0	0/1:69:31,38:31:1100:38:1356:-100.267,0,-78.5392	0/1:99:57,42:57:2032:42:1483:-102.94,0,-153.351	1/1:148:0,148:0:0:148:5226:-465.96,-44.5524,0	0/1:11:4,7:4:144:7:237:-18.2401,0,-10.0023	1/1:63:0,63:0:0:63:2260:-201.515,-18.9649,0	1/1:54:1,53:1:36:53:1887:-163.761,-12.6624,0	0/1:17:9,8:9:324:8:288:-21.0526,0,-24.3883	0/1:112:55,57:55:1964:57:2024:-147.815,0,-143.32	0/1:74:26,48:26:932:48:1700:-129.414,0,-60.5563	0/1:8:7,1:7:248:1:36:-1.16519,0,-20.2448	0/1:17:10,7:10:360:7:252:-17.7573,0,-27.5896	0/1:98:47,51:47:1680:51:1815:-132.989,0,-121.986	0/1:79:50,29:50:1780:29:1019:-67.4742,0,-135.338	1/1:3:0,3:0:0:3:104:-9.65903,-0.90309,0	0/1:230:163,67:163:5794:67:2361:-141.375,0,-451.555	0/1:190:85,105:85:3048:105:3677:-269.945,0,-217.354	0/1:82:49,33:49:1760:33:1175:-80.6825,0,-133.996	1/1:82:0,82:0:0:82:2874:-255.149,-24.6845,0	0/1:178:112,66:112:4020:66:2309:-151.679,0,-308.404	0/1:124:87,37:87:3116:37:1311:-80.0533,0,-243.337	1/1:27:1,26:1:36:26:923:-79.3118,-4.64711,0	1/1:30:0,30:0:0:30:1072:-96.1397,-9.0309,0	0/1:67:47,20:47:1667:20:716:-43.6306,0,-130.049	0/1:14:3,11:3:108:11:392:-30.9187,0,-5.86075	1/1:129:0,126:0:0:126:4464:-395.757,-37.9298,0	0/1:71:40,31:40:1427:31:1108:-77.9914,0,-107.354	1/1:179:0,179:0:0:179:6289:-561.688,-53.8844,0	1/1:152:0,152:0:0:152:5377:-479.419,-45.7566,0	0/1:166:102,64:102:3630:64:2272:-152.1,0,-276.935	1/1:121:0,121:0:0:121:4308:-385.14,-36.4246,0	0/1:17:9,8:9:320:8:288:-20.7796,0,-24.0248	1/1:75:0,75:0:0:75:2671:-239.074,-22.5773,0	0/1:139:62,77:62:2220:77:2752:-203.609,0,-158.221	1/1:217:1,216:1:36:216:7598:-674.647,-61.7252,0	0/1:62:26,36:26:932:36:1276:-95.2977,0,-65.5327	1/1:82:0,82:0:0:82:2899:-258.835,-24.6845,0	0/1:69:33,36:33:1180:36:1283:-93.3125,0,-85.737	1/1:154:2,152:2:72:152:5335:-470.054,-39.5219,0	0/1:25:14,11:14:500:11:392:-27.7874,0,-37.8104	0/1:78:39,39:39:1404:39:1388:-100.457,0,-103.179	1/1:97:0,97:0:0:97:3464:-309.099,-29.1999,0	0/1:37:24,13:24:844:13:468:-31.1419,0,-65.1408	0/1:84:50,34:50:1779:34:1208:-83.0414,0,-135.106	0/1:75:52,23:52:1840:23:816:-50.4207,0,-143.302	1/1:123:0,123:0:0:123:4328:-386.48,-37.0267,0	1/1:132:0,132:0:0:132:4681:-418.086,-39.736,0
chr09	15655415	.	G	A	125575	PASS	AB=0.468516;ABP=58.2502;AC=123;AF=0.654255;AN=188;AO=6414;CIGAR=1X;DP=9832;DPB=9832;DPRA=52.8495;EPP=13930.8;EPPR=7422.93;GTI=1;LEN=1;MEANALT=1.01075;MQM=48.3929;MQMR=58.8949;NS=94;NUMALT=1;ODDS=3.54249;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228003;QR=121168;RO=3417;RPL=12;RPP=13826.8;RPPR=3154.75;RPR=6402;RUN=1;SAF=12;SAP=13826.8;SAR=6402;SRF=2822;SRP=3154.75;SRR=595;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:21,44:21:752:44:1548:-119.059,0,-48.4393	1/1:62:0,62:0:0:62:2180:-193.485,-18.6639,0	1/1:113:0,113:0:0:113:4000:-356.371,-34.0164,0	1/1:207:1,206:1:36:206:7356:-647.656,-58.7149,0	0/1:84:41,43:41:1444:43:1548:-111.82,0,-104.966	0/1:80:46,34:46:1625:34:1220:-84.5469,0,-122.455	1/1:143:0,143:0:0:143:5060:-449.259,-43.0473,0	0/1:121:65,56:65:2310:56:1996:-141.244,0,-171.735	0/1:164:78,86:78:2780:86:3064:-224.388,0,-201.073	0/1:93:37,56:37:1316:56:1965:-147.519,0,-90.746	0/1:37:13,24:13:468:24:847:-64.739,0,-31.3215	1/1:126:0,126:0:0:126:4437:-394.586,-37.9298,0	0/1:90:41,49:41:1464:49:1752:-129.43,0,-104.955	0/1:53:28,25:28:995:25:892:-64.3434,0,-73.9094	0/1:100:48,52:48:1696:52:1864:-136.394,0,-122.823	0/1:48:22,26:22:775:26:936:-69.6821,0,-55.6217	0/1:37:19,18:19:680:18:644:-46.643,0,-50.3911	0/1:33:15,18:15:522:18:636:-47.2912,0,-37.3733	0/1:21:13,8:13:468:8:284:-19.4789,0,-36.138	0/1:121:47,74:47:1675:74:2628:-197.188,0,-114.612	0/1:183:86,97:86:3026:97:3431:-252.149,0,-217.481	0/1:191:145,46:145:5102:46:1622:-87.8336,0,-400.873	1/1:142:1,141:1:36:141:5026:-444.437,-39.148,0	0/1:79:16,63:16:559:63:2242:-177.211,0,-26.8562	1/1:126:0,126:0:0:126:4505:-399.783,-37.9298,0	0/1:409:259,150:259:9154:150:5347:-350.836,0,-697.602	0/1:258:110,148:110:3906:148:5226:-387.928,0,-274.069	0/1:42:19,23:19:676:23:809:-60.1843,0,-48.5247	0/1:467:299,168:299:10572:168:5978:-390.092,0,-810.169	0/1:155:79,76:79:2810:76:2728:-196.53,0,-206.48	0/1:101:47,54:47:1679:54:1923:-141.823,0,-120.992	1/1:8:0,8:0:0:8:288:-26.1563,-2.40824,0	0/1:15:5,10:5:180:10:351:-27.0263,0,-12.0366	1/1:5:0,5:0:0:5:180:-15.4368,-1.50515,0	0/1:8:5,3:5:180:3:108:-7.6275,0,-14.1438	0/1:8:5,3:5:176:3:108:-7.6243,0,-13.7768	0/1:339:210,129:210:7339:129:4606:-306.149,0,-556.887	0/1:103:38,64:38:1346:64:2275:-172.529,0,-90.52	0/1:53:25,28:25:896:28:992:-72.5751,0,-65.0058	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:156:0,156:0:0:156:5557:-495.051,-46.9607,0	0/1:34:17,17:17:612:17:608:-44.5595,0,-45.1784	0/1:217:90,127:90:3223:127:4498:-333.853,0,-224.968	0/1:75:35,40:35:1260:40:1436:-105.425,0,-91.1282	0/1:84:46,38:46:1623:38:1350:-94.4237,0,-121.072	1/1:134:0,134:0:0:134:4759:-423.733,-40.338,0	0/1:108:62,46:62:2220:46:1629:-113.271,0,-167.553	1/1:234:0,234:0:0:234:8322:-741.368,-70.441,0	0/1:74:32,42:32:1136:42:1508:-112.156,0,-80.2727	0/1:101:58,43:58:2063:43:1516:-105.194,0,-155.537	1/1:151:0,151:0:0:151:5378:-478.922,-45.4555,0	0/1:11:4,7:4:140:7:252:-19.5928,0,-9.63325	1/1:68:0,68:0:0:68:2421:-215.889,-20.47,0	1/1:60:1,59:1:32:59:2097:-182.095,-14.8645,0	0/1:17:9,8:9:320:8:284:-20.6969,0,-24.0248	0/1:110:53,57:53:1868:57:2021:-148.131,0,-135.283	0/1:76:25,51:25:888:51:1811:-138.711,0,-55.9942	0/1:8:7,1:7:248:1:36:-1.16519,0,-20.2448	0/1:18:10,8:10:356:8:280:-19.7065,0,-26.9283	0/1:105:48,57:48:1697:57:2001:-146.804,0,-121.406	0/1:79:50,29:50:1780:29:1013:-67.067,0,-135.338	1/1:4:0,4:0:0:4:144:-12.9338,-1.20412,0	0/1:229:159,70:159:5656:70:2491:-152.39,0,-439.939	0/1:194:83,111:83:2964:111:3928:-289.506,0,-208.594	0/1:81:47,34:47:1675:34:1201:-83.3122,0,-126.651	1/1:80:0,80:0:0:80:2800:-248.365,-24.0824,0	0/1:182:111,71:111:3930:71:2509:-166.679,0,-299.106	0/1:120:83,37:83:2967:37:1320:-82.0532,0,-231.139	1/1:27:0,27:0:0:27:968:-86.7249,-8.12781,0	1/1:33:0,33:0:0:33:1175:-105.362,-9.93399,0	0/1:67:47,20:47:1637:20:720:-43.9783,0,-127.363	0/1:19:3,16:3:99:16:563:-44.3937,0,-3.51701	1/1:137:0,137:0:0:137:4847:-430.619,-41.2411,0	0/1:77:38,39:38:1352:39:1376:-100.061,0,-98.8011	1/1:191:0,191:0:0:191:6807:-606.476,-57.4967,0	1/1:154:0,154:0:0:154:5499:-489.964,-46.3586,0	0/1:166:101,65:101:3606:65:2309:-156.032,0,-274.775	1/1:131:0,131:0:0:131:4690:-418.287,-39.4349,0	0/1:17:9,8:9:312:8:288:-20.7796,0,-23.2978	1/1:79:0,79:0:0:79:2818:-251.616,-23.7814,0	0/1:144:62,82:62:2212:82:2926:-217.657,0,-155.997	1/1:226:1,225:1:36:225:8020:-712.077,-64.4345,0	0/1:63:26,37:26:928:37:1320:-98.9148,0,-64.871	1/1:85:0,85:0:0:85:3035:-270.638,-25.5876,0	0/1:72:34,38:34:1204:38:1351:-98.2863,0,-86.9917	1/1:159:2,157:2:72:157:5576:-491.316,-41.027,0	0/1:25:14,11:14:495:11:392:-27.7627,0,-37.3573	0/1:86:40,46:40:1427:46:1632:-119.915,0,-102.838	1/1:103:0,103:0:0:103:3635:-324.349,-31.0061,0	0/1:35:22,13:22:779:13:464:-31.3901,0,-59.896	0/1:83:50,33:50:1780:33:1175:-80.2375,0,-135.497	0/1:81:52,29:52:1856:29:1037:-68.2971,0,-142.934	1/1:132:0,132:0:0:132:4694:-417.214,-39.736,0	1/1:138:0,138:0:0:138:4914:-439.485,-41.5421,0
chr09	15655489	.	C	T	63360.2	PASS	AB=0.549175;ABP=143.11;AC=65;AF=0.345745;AN=188;AO=3674;CIGAR=1X;DP=10115;DPB=10115;DPRA=0.932208;EPP=7972.32;EPPR=13956.9;GTI=2;LEN=1;MEANALT=1.08333;MQM=50.8272;MQMR=46.1645;NS=94;NUMALT=1;ODDS=0.557661;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131361;QR=230206;RO=6430;RPL=0;RPP=7981;RPPR=13965.6;RPR=3674;RUN=1;SAF=3673;SAP=7972.32;SAR=1;SRF=6429;SRP=13956.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:26,32:26:932:32:1140:-84.7867,0,-65.085	0/0:73:73,0:73:2597:0:0:0,-21.9752,-230.831	0/0:210:209,1:209:7463:1:36:0,-59.6332,-657.505	0/0:208:208,0:208:7391:0:0:0,-62.6142,-655.825	0/1:70:27,43:27:968:43:1544:-117.224,0,-65.1137	0/1:17:10,7:10:360:7:252:-17.8176,0,-27.2659	0/0:90:89,0:89:3174:0:0:0,-26.7917,-282.176	0/1:119:60,59:60:2152:59:2108:-151.887,0,-155.319	0/1:94:41,53:41:1463:53:1904:-141.593,0,-101.591	0/1:101:36,65:36:1292:65:2310:-176.708,0,-84.804	0/1:81:36,45:36:1292:45:1620:-120.97,0,-90.936	0/0:107:107,0:107:3840:0:0:0,-32.2102,-341.616	0/1:118:65,53:65:2340:53:1900:-134.278,0,-172.432	0/1:112:55,57:55:1964:57:2044:-149.514,0,-140.655	0/1:84:40,44:40:1432:44:1580:-116.695,0,-102.22	0/1:78:38,40:38:1360:40:1440:-104.989,0,-97.1159	0/1:50:29,21:29:1044:21:756:-52.1633,0,-77.9241	0/1:46:23,23:23:824:23:828:-60.1515,0,-59.6243	0/1:49:22,27:22:792:27:972:-72.6866,0,-55.8295	0/1:317:125,192:125:4472:192:6837:-517.075,0,-302.717	0/1:182:97,85:97:3449:85:3033:-216.474,0,-251.415	0/1:173:39,134:39:1379:134:4765:-375.344,0,-71.5438	0/0:129:128,0:128:4584:0:0:0,-38.5318,-407.804	0/1:63:26,37:26:936:37:1308:-98.2689,0,-62.9078	0/0:61:61,0:61:2175:0:0:0,-18.3628,-192.068	0/1:272:138,134:138:4937:134:4782:-347.077,0,-358.992	0/1:306:132,174:132:4731:174:6226:-464.126,0,-326.784	0/1:41:31,10:31:1112:10:360:-20.2635,0,-86.0206	0/1:345:150,194:150:5392:194:6911:-516.405,0,-378.527	0/1:118:63,54:63:2260:54:1934:-137.763,0,-164.304	0/1:76:34,42:34:1216:42:1503:-111.925,0,-85.7163	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.3213	0/1:24:9,15:9:324:15:540:-41.1462,0,-21.8618	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:22:7,15:7:252:15:540:-42.1068,0,-16.1525	0/1:43:15,28:15:536:28:996:-76.4101,0,-35.1124	0/1:232:105,126:105:3776:126:4514:-335.703,0,-268.205	0/1:110:36,74:36:1296:74:2641:-203.362,0,-81.4183	0/1:66:28,38:28:1000:38:1368:-102.533,0,-69.4997	1/1:1:0,1:0:0:1:36:-3.58305,-0.30103,0	0/0:115:113,2:113:4052:2:72:0,-28.0805,-351.727	0/1:43:21,22:21:756:22:792:-58.0976,0,-54.2518	0/1:177:81,96:81:2904:96:3425:-252.363,0,-204.569	0/1:72:38,34:38:1356:34:1220:-88.0482,0,-98.8532	0/1:68:34,34:34:1220:34:1220:-89.1893,0,-88.0512	0/0:124:124,0:124:4447:0:0:0,-37.3277,-397.628	0/1:190:85,104:85:3048:104:3709:-273.341,0,-214.25	0/0:210:209,1:209:7460:1:36:0,-59.8287,-660.457	0/1:118:54,64:54:1936:64:2288:-170.16,0,-136.372	0/1:154:75,79:75:2688:79:2840:-208.171,0,-193.532	0/0:97:97,0:97:3457:0:0:0,-29.1999,-307.994	0/1:27:13,14:13:468:14:500:-37.0984,0,-31.7871	0/0:165:165,0:165:5902:0:0:0,-49.6699,-523.093	0/0:71:71,0:71:2544:0:0:0,-21.3731,-227.743	0/1:7:4,3:4:144:3:104:-7.56465,0,-11.0597	0/1:212:87,125:87:3128:125:4465:-335.453,0,-213.491	0/1:56:31,25:31:1112:25:900:-64.2494,0,-82.6564	0/1:11:8,3:8:288:3:104:-6.30889,0,-21.8829	0/1:20:7,13:7:252:13:468:-36.3788,0,-16.8007	0/1:60:27,33:27:968:33:1157:-84.9232,0,-68.2313	0/1:131:61,70:61:2196:70:2512:-185.788,0,-155.498	0/0:11:10,1:10:351:1:27:0,-0.616752,-28.9707	0/1:216:108,108:108:3884:108:3861:-281.287,0,-282.224	0/1:149:72,77:72:2576:77:2745:-201.402,0,-183.805	0/1:59:24,35:24:852:35:1256:-94.3664,0,-57.8215	0/0:119:119,0:119:4258:0:0:0,-35.8226,-379.369	0/1:183:66,117:66:2364:117:4204:-322.257,0,-154.086	0/1:182:45,136:45:1604:136:4876:-381.284,0,-88.1624	0/0:70:69,1:69:2480:1:36:0,-17.489,-216.127	0/0:30:29,1:29:1036:1:36:0,-5.44785,-88.9559	0/1:44:18,26:18:644:26:936:-71.1942,0,-44.2189	0/1:42:15,27:15:532:27:968:-74.286,0,-35.1591	0/0:98:98,0:98:3504:0:0:0,-29.5009,-311.279	0/1:101:56,45:56:2003:45:1593:-112.683,0,-147.919	0/0:98:98,0:98:3500:0:0:0,-29.5009,-310.841	0/0:209:208,0:208:7464:0:0:0,-62.6142,-663.385	0/1:124:64,60:64:2283:60:2148:-155.232,0,-165.685	0/0:144:144,0:144:5155:0:0:0,-43.3483,-458.89	0/1:23:11,12:11:392:12:432:-31.9898,0,-27.8628	0/0:142:141,1:141:5060:1:36:0,-39.1632,-444.233	0/1:190:86,104:86:3072:104:3694:-273.972,0,-215.411	0/0:244:244,0:244:8736:0:0:0,-73.4513,-775.923	0/1:66:36,30:36:1284:30:1076:-76.6131,0,-94.6594	0/0:112:112,0:112:4020:0:0:0,-33.7154,-358.652	0/1:67:44,22:44:1584:22:792:-51.2757,0,-121.45	0/0:159:157,2:157:5640:2:72:0,-41.0442,-493.918	0/1:24:14,10:14:500:10:360:-25.3873,0,-37.6247	0/1:96:47,49:47:1680:49:1764:-129.228,0,-118.888	0/0:80:79,0:79:2832:0:0:0,-23.7814,-251.107	0/1:74:41,33:41:1468:33:1184:-84.0186,0,-108.145	0/1:126:59,67:59:2115:67:2396:-176.135,0,-148.934	0/1:91:26,65:26:928:65:2329:-181.847,0,-55.7223	0/0:114:113,0:113:4048:0:0:0,-34.0164,-360.482	0/0:135:135,0:135:4844:0:0:0,-40.639,-431.833
chr09	15655491	.	G	T	122433	PASS	AB=0.449977;ABP=146.61;AC=122;AF=0.648936;AN=188;AO=6304;CIGAR=1X;DP=9952;DPB=9952;DPRA=107;EPP=13683.3;EPPR=7891.97;GTI=1;LEN=1;MEANALT=1.10753;MQM=46.1369;MQMR=50.8853;NS=94;NUMALT=1;ODDS=0.283679;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225292;QR=129967;RO=3637;RPL=0;RPP=13692;RPPR=7900.66;RPR=6304;RUN=1;SAF=6303;SAP=13683.3;SAR=1;SRF=3636;SRP=7891.97;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:29,25:29:1023:25:896:-63.0862,0,-75.5109	1/1:72:1,71:1:36:71:2530:-221.258,-18.0911,0	1/1:204:1,203:1:36:203:7234:-637.923,-57.8271,0	1/1:202:0,202:0:0:202:7178:-637.721,-60.8081,0	0/1:69:42,27:42:1512:27:972:-65.7489,0,-114.652	0/1:17:7,10:7:252:10:360:-27.2659,0,-17.8176	1/1:87:0,86:0:0:86:3075:-273.54,-25.8886,0	0/1:119:59,60:59:2101:60:2156:-155.658,0,-151.377	0/1:93:51,42:51:1828:42:1504:-105.28,0,-135.349	0/1:99:63,36:63:2260:36:1296:-85.7494,0,-172.992	0/1:78:42,36:42:1492:36:1296:-92.1825,0,-110.41	1/1:101:0,101:0:0:101:3612:-321.266,-30.404,0	0/1:113:51,61:51:1832:61:2192:-160.647,0,-129.646	0/1:110:55,55:55:1968:55:1958:-140.785,0,-143.312	0/1:82:43,39:43:1544:39:1396:-99.7504,0,-114.114	0/1:78:41,37:41:1464:37:1324:-93.9221,0,-107.161	0/1:50:21,28:21:748:28:1004:-74.3027,0,-51.6495	0/1:48:25,23:25:900:23:828:-59.3618,0,-65.9066	0/1:48:26,22:26:936:22:784:-55.4563,0,-69.7629	0/1:318:191,127:191:6823:127:4525:-307.307,0,-515.396	0/1:178:83,95:83:2980:95:3392:-247.197,0,-213.165	0/1:166:125,41:125:4481:41:1464:-81.0361,0,-352.217	1/1:125:0,125:0:0:125:4455:-397.079,-37.6288,0	0/1:62:38,24:38:1355:24:851:-55.6727,0,-102.576	1/1:61:0,61:0:0:61:2165:-191.191,-18.3628,0	0/1:274:134,139:134:4787:139:4980:-361.992,0,-346.911	0/1:300:170,129:170:6062:129:4628:-319.842,0,-451.74	0/1:41:11,30:11:396:30:1063:-81.8962,0,-23.4883	0/1:339:194,144:194:6908:144:5128:-356.774,0,-517.925	0/1:117:54,63:54:1925:63:2236:-162.498,0,-137.057	0/1:76:42,34:42:1484:34:1224:-86.1136,0,-110.225	1/1:16:0,16:0:0:16:572:-51.1223,-4.81648,0	0/1:24:14,10:14:504:10:352:-24.3826,0,-37.9213	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:23:15,8:15:532:8:288:-19.0542,0,-41.0988	0/1:46:31,15:31:1112:15:532:-33.8688,0,-85.8947	0/1:230:124,106:124:4421:106:3777:-268.893,0,-327.924	0/1:108:73,35:73:2601:35:1231:-76.556,0,-200.021	0/1:65:38,27:38:1352:27:972:-67.2633,0,-101.427	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58305	1/1:112:2,110:2:72:110:3889:-337.538,-27.1774,0	0/1:43:22,21:22:792:21:756:-54.2518,0,-58.0976	0/1:173:95,77:95:3412:77:2740:-191.157,0,-252.325	0/1:75:37,38:37:1328:38:1368:-99.0154,0,-96.2084	0/1:63:32,31:32:1140:31:1116:-80.2857,0,-83.5262	1/1:124:0,124:0:0:124:4434:-395.785,-37.3277,0	0/1:185:100,85:100:3569:85:3043:-214.989,0,-262.826	1/1:202:0,202:0:0:202:7224:-642.426,-60.8081,0	0/1:115:64,51:64:2300:51:1836:-128.389,0,-172.132	0/1:151:78,73:78:2792:73:2616:-188.026,0,-204.78	1/1:95:0,95:0:0:95:3378:-300.713,-28.5979,0	0/1:26:14,12:14:504:12:424:-28.3493,0,-37.7564	1/1:164:0,164:0:0:164:5871:-520.506,-49.3689,0	1/1:69:0,69:0:0:69:2451:-219.576,-20.7711,0	0/1:7:3,4:3:108:4:144:-11.0597,0,-7.92853	0/1:210:124,86:124:4417:86:3079:-210.075,0,-331.776	0/1:55:26,29:26:932:29:1040:-76.5536,0,-67.4251	0/1:10:2,8:2:72:8:284:-22.133,0,-3.81673	0/1:20:13,7:13:468:7:252:-16.8007,0,-36.3788	0/1:58:32,26:32:1152:26:917:-64.2857,0,-84.485	0/1:129:68,61:68:2432:61:2171:-153.949,0,-179.221	0/1:11:1,10:1:36:10:360:-29.1467,0,-0.247287	0/1:216:107,109:107:3805:109:3897:-283.245,0,-276.286	0/1:146:75,71:75:2669:71:2540:-181.735,0,-195.295	0/1:57:35,22:35:1260:22:784:-52.6937,0,-95.3192	1/1:117:0,117:0:0:117:4177:-371.563,-35.2205,0	0/1:180:117,63:117:4166:63:2259:-145.807,0,-319.658	0/1:181:138,43:138:4930:43:1524:-81.5556,0,-386.201	1/1:68:1,67:1:36:67:2403:-209.538,-16.887,0	1/1:29:1,28:1:36:28:1008:-86.4317,-5.14682,0	0/1:46:28,18:28:1004:18:644:-43.6328,0,-76.6986	0/1:42:27,15:27:964:15:536:-35.504,0,-73.9304	1/1:97:0,97:0:0:97:3479:-308.794,-29.1999,0	0/1:102:46,56:46:1628:56:1989:-146.407,0,-115.523	1/1:94:0,94:0:0:94:3372:-299.433,-28.2968,0	1/1:203:0,203:0:0:203:7262:-645.951,-61.1091,0	0/1:119:56,63:56:2012:63:2248:-164.097,0,-144.536	1/1:142:0,142:0:0:142:5104:-454.262,-42.7463,0	0/1:23:12,11:12:432:11:396:-28.2042,0,-31.9898	1/1:142:1,141:1:36:141:5037:-442.292,-39.1632,0	0/1:187:103,84:103:3684:84:3000:-210.101,0,-273.736	1/1:233:0,233:0:0:233:8329:-740.661,-70.14,0	0/1:66:30,36:30:1076:36:1284:-94.6637,0,-76.7057	1/1:109:0,108:0:0:108:3876:-345.61,-32.5112,0	0/1:69:23,46:23:824:46:1644:-126.173,0,-53.528	1/1:155:2,153:2:72:153:5487:-480.376,-39.8401,0	0/1:24:10,14:10:360:14:496:-37.2957,0,-25.3873	0/1:97:50,46:50:1796:46:1648:-115.649,0,-131.832	1/1:79:0,79:0:0:79:2828:-251.131,-23.7814,0	0/1:76:33,43:33:1184:43:1540:-113.919,0,-83.4165	0/1:128:69,59:69:2455:59:2124:-149.17,0,-181.083	0/1:92:65,27:65:2321:27:968:-58.9752,0,-180.744	1/1:109:0,109:0:0:109:3878:-345.209,-32.8123,0	1/1:131:0,129:0:0:129:4636:-412.888,-38.8329,0
chr09	15702426	.	AT	AA,GA	48124.5	PASS	AB=0.491652,0.508348;ABP=4.06166,4.06166;AC=126,60;AF=0.677419,0.322581;AN=186;AO=1645,885;CIGAR=1M1X,2X;DP=2531;DPB=2531;DPRA=0,1.27989;EPP=3575.08,1924.76;EPPR=5.18177;GTI=1;LEN=1,2;MEANALT=1.66667,2;MQM=45.4973,34.6023;MQMR=60;NS=93;NUMALT=2;ODDS=1.30797;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=58740,30332;QR=36;RO=1;RPL=1645,885;RPP=3575.08,1924.76;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=1645,885;SAP=3575.08,1924.76;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	.:.:.:.:.:.:.:.	1/1:25:0,25,0:0:0:25,0:892,0:-78.898,-7.52575,0,-78.898,-7.52575,-78.898	1/1:16:0,16,0:0:0:16,0:569,0:-50.4452,-4.81648,0,-50.4452,-4.81648,-50.4452	1/1:54:0,54,0:0:0:54,0:1917,0:-170.979,-16.2556,0,-170.979,-16.2556,-170.979	1/2:8:0,4,4:0:0:4,4:144,136:-20.1479,-8.5315,-7.32738,-11.9254,0,-10.7213	1/2:21:0,8,13:0:0:8,13:284,446:-54.3337,-32.0727,-29.6644,-22.5892,0,-18.6758	1/1:28:0,28,0:0:0:28,0:1000,0:-89.1939,-8.42884,0,-89.1939,-8.42884,-89.1939	1/2:11:0,3,8:0:0:3,8:108,275:-29.0931,-20.479,-19.5759,-8.95573,0,-6.54749	1/2:13:0,5,8:0:0:5,8:180,271:-34.6517,-20.2965,-18.7913,-14.6915,0,-12.2832	1/2:22:0,7,15:0:0:7,15:252,513:-57.8975,-37.5186,-35.4114,-20.7204,0,-16.2049	1/2:18:0,10,8:0:0:10,8:360,283:-49.7179,-20.6206,-17.6103,-29.431,0,-27.0228	1/1:24:0,24,0:0:0:24,0:860,0:-75.5266,-7.22472,0,-75.5266,-7.22472,-75.5266	1/2:29:0,16,13:0:0:16,13:576,457:-78.5204,-33.8543,-29.0379,-44.9967,0,-41.0833	1/2:36:0,15,21:0:0:15,21:540,739:-97.8474,-54.5284,-50.013,-43.6591,0,-37.3375	1/2:31:0,13,18:0:0:13,18:456,603:-80.8186,-44.051,-40.1376,-37.0967,0,-31.6781	1/2:22:0,10,12:0:0:10,12:360,408:-59.3482,-30.4274,-27.4171,-29.2562,0,-25.6438	1/2:22:0,13,9:0:0:13,9:464,311:-60.0848,-23.1007,-19.1873,-37.313,0,-34.6037	1/2:22:0,15,7:0:0:15,7:536,244:-61.0139,-18.3303,-13.8148,-43.0126,0,-40.9054	1/2:15:0,9,6:0:0:9,6:320,203:-40.3801,-15.3931,-12.6839,-25.3113,0,-23.5052	1/2:19:0,6,13:0:0:6,13:212,436:-48.8351,-31.7145,-29.9083,-17.4556,0,-13.5422	1/2:22:0,11,11:0:0:11,11:392,378:-59.2842,-27.7777,-24.4664,-31.8377,0,-28.5264	1/2:18:0,7,11:0:0:7,11:252,380:-49.0119,-28.5794,-26.4722,-20.775,0,-17.4637	1/1:21:0,21,0:0:0:21,0:748,0:-66.7528,-6.32163,0,-66.7528,-6.32163,-66.7528	1/2:47:0,38,9:0:0:38,9:1364,297:-131.44,-22.283,-10.8438,-109.47,0,-106.761	1/1:4:0,4,0:0:0:4,0:140,0:-12.7875,-1.20412,0,-12.7875,-1.20412,-12.7875	1/2:72:0,34,38:0:0:34,38:1214,1319:-196.303,-98.4812,-88.2462,-98.1593,0,-86.7202	1/2:53:0,38,15:0:0:38,15:1368,525:-148.885,-38.8942,-27.4551,-110.32,0,-105.804	1/2:12:0,7,5:0:0:7,5:252,171:-32.6352,-12.9749,-10.8677,-19.9877,0,-18.4826	1/2:45:0,15,30:0:0:15,30:540,1053:-122.427,-78.6559,-74.1405,-44.1175,0,-35.0866	1/2:43:0,26,17:0:0:26,17:932,596:-118.945,-44.0733,-36.2465,-75.2043,0,-70.0868	1/2:29:0,9,20:0:0:9,20:320,668:-73.596,-47.7392,-45.0299,-26.1921,0,-20.1715	1/1:14:0,14,0:0:0:14,0:504,0:-45.0661,-4.21442,0,-45.0661,-4.21442,-45.0661	1/2:7:0,3,4:0:0:3,4:108,131:-18.6862,-9.98581,-9.08272,-9.03275,0,-7.82863	1/1:12:0,12,0:0:0:12,0:428,0:-37.4957,-3.61236,0,-37.4957,-3.61236,-37.4957	1/2:14:0,10,4:0:0:10,4:360,133:-38.8527,-10.0783,-7.068,-29.093,0,-27.8888	1/1:3:0,3,0:0:0:3,0:108,0:-9.85882,-0.90309,0,-9.85882,-0.90309,-9.85882	1/2:90:0,47,43:0:0:47,43:1692,1465:-246.072,-108.893,-94.7441,-137.515,0,-124.57	1/2:39:0,18,21:0:0:18,21:644,701:-103.774,-52.0178,-46.5992,-52.0874,0,-45.7658	1/2:20:0,9,11:0:0:9,11:320,390:-54.3611,-28.8571,-26.1478,-25.8403,0,-22.529	1/1:4:0,4,0:0:0:4,0:144,0:-13.1295,-1.20412,0,-13.1295,-1.20412,-13.1295	1/1:30:0,30,0:0:0:30,0:1072,0:-95.486,-9.0309,0,-95.486,-9.0309,-95.486	1/2:14:0,8,6:0:0:8,6:288,211:-38.9415,-15.7804,-13.3722,-23.4959,0,-21.6897	1/2:18:0,13,5:0:0:13,5:468,178:-50.9378,-13.3352,-9.42181,-37.9341,0,-36.429	1/2:38:0,13,25:0:0:13,25:468,845:-99.3252,-61.4893,-57.5759,-38.175,0,-30.6492	1/2:31:0,13,18:0:0:13,18:456,612:-81.1696,-44.7882,-40.8748,-36.7105,0,-31.2919	1/1:13:0,13,0:0:0:13,0:464,0:-41.867,-3.91339,0,-41.867,-3.91339,-41.867	1/2:16:0,10,6:0:0:10,6:360,201:-43.4118,-15.191,-12.1807,-28.5439,0,-26.7378	1/1:41:0,41,0:0:0:41,0:1476,0:-131.031,-12.3422,0,-131.031,-12.3422,-131.031	1/2:40:0,23,17:0:0:23,17:828,584:-109.049,-42.4545,-35.5308,-66.9231,0,-61.8056	1/2:30:0,8,22:0:0:8,22:288,761:-78.3849,-55.0997,-52.6915,-23.6295,0,-17.0068	1/1:60:0,60,0:0:0:60,0:2148,0:-191.401,-18.0618,0,-191.401,-18.0618,-191.401	1/2:2:0,1,1:0:0:1,1:36,36:-5.81465,-2.88659,-2.58556,-3.26578,0,-2.96475	1/1:9:0,9,0:0:0:9,0:320,0:-28.5496,-2.70927,0,-28.5496,-2.70927,-28.5496	1/1:11:0,11,0:0:0:11,0:396,0:-35.7877,-3.31133,0,-35.7877,-3.31133,-35.7877	1/2:10:0,9,1:0:0:9,1:324,34:-28.5797,-2.84514,-0.135875,-26.0528,0,-25.7518	1/2:25:0,8,17:0:0:8,17:288,599:-67.1692,-44.2,-41.7917,-23.3113,0,-18.1937	1/2:13:0,9,4:0:0:9,4:324,131:-35.7201,-9.49138,-6.78211,-26.5386,0,-25.3345	1/1:1:0,1,0:0:0:1,0:36,0:-3.57877,-0.30103,0,-3.57877,-0.30103,-3.57877	1/2:5:0,4,1:0:0:4,1:130,36:-13.3027,-2.99799,-1.79387,-10.6326,0,-10.3316	1/2:14:0,3,11:0: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chr09	15704003	.	T	C	50120.4	PASS	AB=0.484622;ABP=15.9004;AC=63;AF=0.342391;AN=184;AO=3054;CIGAR=1X;DP=9608;DPB=9608;DPRA=0.945393;EPP=6634.69;EPPR=14206.6;GTI=5;LEN=1;MEANALT=1.07463;MQM=59.521;MQMR=59.5157;NS=92;NUMALT=1;ODDS=0.79418;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=108416;QR=234544;RO=6549;RPL=0;RPP=6634.69;RPPR=14206.6;RPR=3054;RUN=1;SAF=3054;SAP=6634.69;SAR=0;SRF=6549;SRP=14224;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:29,7:29:1036:7:244:-11.4623,0,-82.7087	0/0:107:107,0:107:3844:0:0:0,-32.2102,-344.775	0/0:135:135,0:135:4811:0:0:0,-40.639,-433.111	0/0:166:166,0:166:5934:0:0:0,-49.971,-534.087	0/1:58:23,35:23:828:35:1256:-95.8855,0,-57.3737	0/1:49:24,25:24:864:25:888:-65.4886,0,-63.3239	0/0:214:214,0:214:7667:0:0:0,-64.4204,-689.698	0/1:137:72,65:72:2563:65:2298:-165.437,0,-189.644	0/1:102:61,41:61:2184:41:1460:-100.988,0,-166.105	0/1:128:64,64:64:2279:64:2270:-165.962,0,-166.834	0/1:68:36,32:36:1269:32:1144:-82.7857,0,-94.0358	0/0:91:91,0:91:3247:0:0:0,-27.3937,-292.438	0/1:84:47,37:47:1680:37:1315:-93.3482,0,-126.176	0/1:93:50,43:50:1796:43:1536:-110.537,0,-133.895	0/1:84:47,37:47:1692:37:1313:-93.1621,0,-127.257	0/1:72:46,26:46:1656:26:932:-62.514,0,-127.627	0/1:84:37,47:37:1328:47:1675:-125.736,0,-94.5276	0/1:74:33,41:33:1184:41:1467:-110.049,0,-84.5839	0/1:40:23,17:23:824:17:612:-43.364,0,-62.4421	0/1:245:137,108:137:4920:108:3801:-268.537,0,-368.928	0/1:175:92,82:92:3287:82:2891:-207.773,0,-242.661	0/1:123:44,79:44:1580:79:2799:-215.052,0,-105.464	0/0:68:67,1:67:2400:1:32:0,-17.2707,-213.015	0/1:130:71,59:71:2552:59:2116:-151.535,0,-190.764	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.447	0/1:321:174,146:174:6236:146:5172:-369.041,0,-464.636	0/1:219:117,101:117:4169:101:3620:-259.989,0,-309.313	0/1:38:18,20:18:648:20:716:-53.3286,0,-47.2127	0/1:312:154,158:154:5516:158:5631:-412.737,0,-402.567	0/1:153:78,75:78:2800:75:2651:-192.71,0,-206.182	0/1:118:52,66:52:1872:66:2329:-174.327,0,-133.16	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:251:127,124:127:4560:124:4407:-321.033,0,-333.912	0/1:199:88,111:88:3156:111:3953:-296.019,0,-224.285	0/1:65:30,35:30:1080:35:1243:-92.6069,0,-77.929	.:.:.:.:.:.:.:.	0/0:146:142,4:142:5070:4:136:0,-31.3792,-443.62	0/1:53:31,22:31:1112:22:792:-55.6511,0,-84.4034	0/1:131:69,62:69:2476:62:2202:-158.811,0,-183.549	0/1:96:47,49:47:1692:49:1756:-129.397,0,-123.654	0/1:76:45,31:45:1612:31:1096:-76.0717,0,-122.236	0/0:98:98,0:98:3509:0:0:0,-29.5009,-315.982	0/1:163:97,66:97:3484:66:2335:-161.339,0,-264.653	0/0:141:140,1:140:5019:1:36:0,-38.847,-446.986	0/1:100:59,41:59:2120:41:1456:-101.178,0,-160.935	0/1:133:64,69:64:2300:69:2453:-180.973,0,-167.21	0/0:177:177,0:177:6356:0:0:0,-53.2823,-571.978	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:152:152,0:152:5421:0:0:0,-45.7566,-488.012	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.069	0/1:7:6,1:6:216:1:32:-1.0921,0,-17.5874	0/1:162:91,71:91:3268:71:2540:-180.074,0,-245.445	0/1:55:31,24:31:1116:24:829:-58.3552,0,-84.1813	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:8:6,2:6:212:2:57:-3.00507,0,-16.9978	0/1:105:56,49:56:2012:49:1752:-126.327,0,-149.745	0/1:152:72,80:72:2583:80:2851:-211.03,0,-186.932	.:.:.:.:.:.:.:.	0/1:168:83,85:83:2971:85:2965:-216.439,0,-216.885	0/1:173:86,87:86:3080:87:3070:-224.388,0,-225.262	0/1:76:39,37:39:1400:37:1311:-95.4126,0,-103.4	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.082	0/1:100:51,49:51:1804:49:1739:-126.675,0,-132.532	0/1:102:37,64:37:1332:64:2280:-174.659,0,-89.1512	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.296	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.12	0/1:107:60,47:60:2140:47:1680:-119.259,0,-160.617	0/1:27:10,17:10:352:17:604:-46.5619,0,-23.8765	0/0:123:123,0:123:4395:0:0:0,-37.0267,-395.337	0/1:57:39,18:39:1400:18:648:-41.485,0,-109.127	0/0:209:209,0:209:7485:0:0:0,-62.9153,-673.631	0/0:144:144,0:144:5168:0:0:0,-43.3483,-465.179	0/1:62:34,28:34:1224:28:991:-70.8233,0,-91.7868	0/0:119:119,0:119:4252:0:0:0,-35.8226,-381.91	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.552	0/1:122:60,62:60:2144:62:2203:-161.659,0,-156.482	0/0:255:255,0:255:9144:0:0:0,-76.7626,-822.243	0/1:119:54,65:54:1927:65:2301:-171.523,0,-137.818	0/0:76:74,1:74:2643:1:36:0,-19.3525,-234.477	0/1:85:40,45:40:1440:45:1605:-119.13,0,-104.296	0/0:182:177,5:177:6337:5:176:0,-38.6024,-553.719	0/1:39:24,15:24:842:15:511:-34.5629,0,-64.3349	0/1:82:35,47:35:1235:47:1680:-126.742,0,-86.7608	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.218	0/1:54:29,25:29:1027:25:885:-63.7109,0,-76.4646	0/1:98:58,40:58:2071:40:1425:-98.8153,0,-157.138	0/1:83:31,52:31:1116:52:1820:-138.838,0,-75.7387	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.118	0/0:131:131,0:131:4692:0:0:0,-39.4349,-422.312
chr09	15704010	.	T	C	131315	PASS	AB=0.511806;ABP=10.5987;AC=121;AF=0.657609;AN=184;AO=6521;CIGAR=1X;DP=9596;DPB=9596;DPRA=105.44;EPP=14015.9;EPPR=6569.95;GTI=4;LEN=1;MEANALT=1.03297;MQM=59.5042;MQMR=59.541;NS=92;NUMALT=1;ODDS=0.427314;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232330;QR=109814;RO=3072;RPL=17;RPP=14015.9;RPPR=6569.95;RPR=6504;RUN=1;SAF=6521;SAP=14163.2;SAR=0;SRF=3072;SRP=6673.77;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:7,28:7:243:28:1004:-80.1316,0,-11.6714	1/1:107:0,107:0:0:107:3835:-344.705,-32.2102,0	1/1:133:0,133:0:0:133:4730:-425.831,-40.037,0	1/1:166:0,166:0:0:166:5923:-533.07,-49.971,0	0/1:58:35,23:35:1252:23:824:-57.0129,0,-95.5253	0/1:51:26,25:26:928:25:896:-65.5915,0,-68.4857	1/1:216:0,216:0:0:216:7690:-691.897,-65.0225,0	0/1:135:64,71:64:2296:71:2527:-187.016,0,-165.856	0/1:100:41,59:41:1468:59:2101:-159.238,0,-102.31	0/1:128:63,64:63:2256:64:2273:-166.226,0,-164.648	0/1:69:33,36:33:1184:36:1288:-95.4478,0,-86.078	1/1:92:0,92:0:0:92:3299:-297.118,-27.6948,0	0/1:84:36,48:36:1284:48:1708:-128.701,0,-90.5606	0/1:95:43,52:43:1540:52:1848:-137.97,0,-110.295	0/1:83:35,48:35:1260:48:1724:-130.437,0,-88.7063	0/1:72:26,46:26:932:46:1648:-126.907,0,-62.514	0/1:83:45,38:45:1612:38:1359:-97.5804,0,-120.368	0/1:72:40,32:40:1424:32:1140:-81.2269,0,-106.783	0/1:42:19,23:19:675:23:815:-61.0275,0,-48.4209	0/1:241:106,135:106:3793:135:4800:-359.561,0,-269.005	0/1:177:85,92:85:3032:92:3249:-239.313,0,-219.776	0/1:127:82,44:82:2924:44:1567:-103.028,0,-225.015	1/1:67:1,66:1:36:66:2367:-209.646,-16.5707,0	0/1:129:59,70:59:2104:70:2499:-186.307,0,-150.757	1/1:67:0,67:0:0:67:2379:-214.27,-20.169,0	0/1:315:147,168:147:5268:168:5957:-441.297,0,-379.38	0/1:224:106,118:106:3791:118:4203:-310.848,0,-273.925	0/1:38:20,18:20:712:18:648:-47.2127,0,-52.9675	0/1:311:159,152:159:5701:152:5435:-395.582,0,-419.243	0/1:149:71,78:71:2548:78:2760:-203.766,0,-184.501	0/1:119:66,53:66:2360:53:1897:-135.12,0,-176.781	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:252:124,128:124:4444:128:4556:-334.18,0,-324.058	0/1:197:112,85:112:3993:85:3045:-214.922,0,-300.211	0/1:66:37,29:37:1324:29:1040:-74.03,0,-99.5941	.:.:.:.:.:.:.:.	1/1:145:6,139:6:212:139:4938:-425.03,-24.2462,0	0/1:49:21,28:21:752:28:996:-75.1754,0,-53.2558	0/1:130:63,67:63:2256:67:2400:-177.018,0,-163.965	0/1:99:49,50:49:1745:50:1790:-131.562,0,-127.502	0/1:79:34,45:34:1220:45:1604:-120.733,0,-86.3117	1/1:98:0,98:0:0:98:3480:-313.375,-29.5009,0	0/1:162:65,97:65:2324:97:3464:-263.157,0,-160.65	1/1:140:1,139:1:36:139:4923:-439.205,-38.5459,0	0/1:95:40,55:40:1428:55:1956:-147.688,0,-100.178	0/1:134:70,64:70:2471:64:2300:-166.895,0,-182.288	1/1:177:0,177:0:0:177:6327:-569.372,-53.2823,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:152:0,152:0:0:152:5424:-488.272,-45.7566,0	1/1:38:0,38:0:0:38:1356:-122.323,-11.4391,0	0/1:7:1,6:1:36:6:216:-17.5874,0,-1.49106	0/1:157:70,87:70:2489:87:3109:-232.743,0,-177	0/1:54:25,29:25:885:29:1040:-77.6587,0,-63.6971	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:7:2,5:2:72:5:180:-14.426,0,-4.72951	0/1:102:46,56:46:1625:56:2008:-150.287,0,-115.811	0/1:152:80,72:80:2864:72:2583:-186.932,0,-212.199	.:.:.:.:.:.:.:.	0/1:169:87,82:87:3113:82:2921:-212.057,0,-229.416	0/1:170:85,85:85:3039:85:3012:-220.08,0,-222.491	0/1:74:35,39:35:1256:39:1400:-104.002,0,-91.0691	1/1:55:0,55:0:0:55:1951:-175.838,-16.5567,0	0/1:102:52,50:52:1856:50:1779:-129.686,0,-136.36	0/1:100:63,37:63:2252:37:1307:-87.781,0,-172.799	1/1:47:0,47:0:0:47:1684:-151.815,-14.1484,0	1/1:97:0,97:0:0:97:3452:-310.612,-29.1999,0	0/1:107:49,58:49:1756:58:2042:-151.818,0,-126.096	0/1:31:20,11:20:716:11:392:-26.2743,0,-55.4349	1/1:122:0,122:0:0:122:4368:-392.913,-36.7257,0	0/1:58:18,40:18:644:40:1402:-108.969,0,-40.8227	1/1:211:0,211:0:0:211:7497:-674.73,-63.5173,0	1/1:143:0,143:0:0:143:5067:-456.101,-43.0473,0	0/1:68:31,37:31:1108:37:1328:-99.3195,0,-79.5446	1/1:119:0,119:0:0:119:4215:-379.328,-35.8226,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:78:0,78:0:0:78:2780:-250.399,-23.4803,0	0/1:126:65,61:65:2336:61:2145:-155.366,0,-172.544	1/1:255:0,255:0:0:255:9099:-818.808,-76.7627,0	0/1:120:65,55:65:2315:55:1950:-139.585,0,-172.464	1/1:77:0,76:0:0:76:2710:-243.701,-22.8783,0	0/1:87:47,40:47:1676:40:1432:-102.974,0,-124.908	1/1:184:5,179:5:180:179:6382:-557.601,-38.8375,0	0/1:39:15,24:15:540:24:860:-65.9597,0,-37.1826	0/1:84:49,35:49:1756:35:1256:-88.0506,0,-132.977	1/1:100:0,100:0:0:100:3560:-320.504,-30.103,0	0/1:55:25,30:25:896:30:1049:-78.1589,0,-64.3955	0/1:95:39,56:39:1396:56:2004:-152.021,0,-97.103	0/1:83:51,32:51:1820:32:1125:-76.5193,0,-139.068	1/1:102:0,102:0:0:102:3652:-328.521,-30.7051,0	1/1:129:0,129:0:0:129:4601:-414.131,-38.8329,0
chr09	15745778	.	C	T	98233.6	PASS	AB=0.518021;ABP=16.8629;AC=122;AF=0.655914;AN=186;AO=4936;CIGAR=1X;DP=7315;DPB=7315;DPRA=79.5;EPP=10712.7;EPPR=5160.26;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.9864;MQMR=59.9907;NS=93;NUMALT=1;ODDS=1.56192;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175897;QR=84384;RO=2375;RPL=4934;RPP=10704;RPPR=5151.58;RPR=2;RUN=1;SAF=4933;SAP=10695.4;SAR=3;SRF=2374;SRP=5151.58;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:17,15:17:608:15:532:-38.5801,0,-45.4191	1/1:81:0,81:0:0:81:2895:-260.786,-24.3834,0	1/1:74:0,74:0:0:74:2633:-237.216,-22.2762,0	1/1:192:1,191:1:36:191:6801:-608.564,-54.1995,0	0/1:38:20,18:20:720:18:640:-46.4896,0,-53.6896	0/1:60:34,26:34:1224:26:928:-65.7765,0,-92.4052	1/1:101:0,101:0:0:101:3605:-324.652,-30.404,0	0/1:66:36,30:36:1283:30:1053:-75.2104,0,-95.9046	0/1:94:44,50:44:1571:50:1765:-130.834,0,-113.384	0/1:47:17,30:17:600:30:1076:-83.0044,0,-40.1808	0/1:86:40,46:40:1427:46:1643:-122.27,0,-102.838	1/1:88:0,88:0:0:88:3124:-281.388,-26.4906,0	0/1:90:42,48:42:1482:48:1687:-125.02,0,-106.58	0/1:97:44,53:44:1568:53:1904:-142.438,0,-112.212	0/1:77:31,46:31:1108:46:1636:-124.349,0,-76.8517	0/1:69:36,33:36:1261:33:1171:-84.9256,0,-93.0193	0/1:107:59,48:59:2099:48:1702:-121.254,0,-156.969	0/1:55:28,27:28:1000:27:960:-70.1596,0,-73.7587	0/1:34:16,18:16:563:18:640:-47.6943,0,-40.7641	0/1:85:42,43:42:1496:43:1540:-113.305,0,-109.347	0/1:99:54,45:54:1915:45:1607:-115.117,0,-142.825	0/1:60:38,22:38:1330:22:780:-52.4612,0,-101.934	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0	0/1:92:61,30:61:2183:30:1067:-68.7328,0,-169.129	1/1:68:0,68:0:0:68:2428:-218.776,-20.47,0	0/1:236:110,126:110:3931:126:4502:-334.304,0,-282.939	0/1:203:86,117:86:3067:117:4165:-313.924,0,-215.15	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	0/1:131:74,57:74:2656:57:2048:-145.157,0,-199.851	0/1:105:44,61:44:1552:61:2196:-166.297,0,-108.361	0/1:97:49,48:49:1723:48:1724:-126.245,0,-126.152	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:5,1:5:165:1:36:-1.79209,0,-13.3674	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:241:97,144:97:3418:144:5106:-387.134,0,-235.286	0/1:77:29,48:29:1019:48:1724:-132.266,0,-68.842	0/1:78:36,42:36:1280:42:1483:-110.283,0,-92.0229	.:.:.:.:.:.:.:.	1/1:92:4,88:4:144:88:3126:-268.253,-14.3811,0	0/1:37:15,22:15:523:22:792:-60.4676,0,-36.2603	0/1:105:38,67:38:1368:67:2400:-184.649,0,-91.8127	0/1:114:53,61:53:1904:61:2161:-160.438,0,-137.32	0/1:78:37,41:37:1299:41:1438:-106.234,0,-93.7301	1/1:90:0,90:0:0:90:3207:-288.853,-27.0927,0	0/1:57:23,34:23:801:34:1220:-92.9481,0,-55.248	1/1:34:0,34:0:0:34:1213:-109.475,-10.235,0	0/1:92:35,57:35:1235:57:2035:-155.727,0,-83.7587	0/1:91:53,38:53:1895:38:1348:-94.226,0,-143.434	1/1:82:0,82:0:0:82:2939:-264.743,-24.6845,0	0/1:4:1,2:1:36:2:72:-5.5738,0,-2.33536	1/1:94:3,91:3:108:91:3239:-281.656,-18.2217,0	1/1:44:0,44:0:0:44:1578:-142.311,-13.2453,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:92:55,37:55:1926:37:1320:-91.4072,0,-145.921	0/1:46:34,11:34:1197:11:381:-20.7156,0,-94.1275	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:56:29,27:29:1032:27:972:-70.9356,0,-76.3358	0/1:121:50,71:50:1767:71:2508:-189.549,0,-122.888	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:109:17,92:17:612:92:3288:-263.326,0,-22.6012	0/1:110:57,53:57:2019:53:1892:-137.445,0,-148.869	0/1:39:19,20:19:680:20:707:-52.2144,0,-49.789	1/1:69:0,69:0:0:69:2442:-220.034,-20.7711,0	0/1:152:82,70:82:2915:70:2495:-179.045,0,-216.74	0/1:61:41,20:41:1456:20:716:-46.4049,0,-112.973	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:60:0,60:0:0:60:2156:-194.293,-18.0618,0	0/1:108:51,57:51:1807:57:2030:-150.459,0,-130.4	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	1/1:50:1,49:1:36:49:1723:-151.753,-11.4532,0	0/1:23:13,9:13:459:9:324:-22.5234,0,-34.6621	1/1:137:0,137:0:0:137:4888:-440.071,-41.2411,0	1/1:88:0,88:0:0:88:3142:-283.006,-26.4906,0	0/1:105:54,51:54:1910:51:1832:-133.549,0,-140.568	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	0/1:101:46,55:46:1644:55:1963:-146.541,0,-117.845	1/1:109:0,109:0:0:109:3892:-350.475,-32.8123,0	0/1:131:49,82:49:1756:82:2934:-224.859,0,-118.889	1/1:63:0,63:0:0:63:2242:-202.042,-18.9649,0	0/1:111:55,56:55:1951:56:1980:-145.057,0,-142.451	1/1:193:0,193:0:0:193:6848:-616.264,-58.0988,0	0/1:46:25,21:25:892:21:752:-54.1589,0,-66.7523	0/1:96:40,56:40:1418:56:1992:-150.655,0,-99.017	1/1:99:1,98:1:36:98:3481:-309.903,-26.2037,0	0/1:46:28,18:28:996:18:635:-43.6296,0,-76.1075	0/1:126:55,71:55:1963:71:2478:-185.341,0,-139.015	0/1:95:61,34:61:2166:34:1224:-81.8692,0,-166.608	1/1:74:1,73:1:32:73:2592:-230.328,-19.0769,0	1/1:145:0,145:0:0:145:5204:-468.497,-43.6494,0
chr09	16105583	.	T	C	45248.2	PASS	AB=0.554191;ABP=121.39;AC=63;AF=0.335106;AN=188;AO=2593;CIGAR=1X;DP=6957;DPB=6957;DPRA=1.2853;EPP=5581.64;EPPR=9319.27;GTI=1;LEN=1;MEANALT=1.01429;MQM=59.99;MQMR=59.9911;NS=94;NUMALT=1;ODDS=0.368282;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92668;QR=156422;RO=4362;RPL=2587;RPP=5581.64;RPPR=9319.27;RPR=6;RUN=1;SAF=0;SAP=5633.64;SAR=2593;SRF=0;SRP=9474.97;SRR=4362;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:79:35,44:35:1260:44:1576:-118.35,0,-89.9241	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:84:82,2:82:2936:2:72:0,-18.4498,-257.638	0/0:164:163,1:163:5837:1:36:0,-45.7706,-521.842	0/1:49:38,11:38:1360:11:396:-21.2323,0,-107.95	0/1:39:20,19:20:716:19:684:-50.1502,0,-53.0275	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:140:70,70:70:2516:70:2508:-183.828,0,-184.547	0/1:83:37,46:37:1316:46:1645:-123.352,0,-93.7563	0/1:71:29,42:29:1040:42:1488:-112.839,0,-72.5412	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.108	0/1:66:29,37:29:1040:37:1328:-99.9543,0,-74.0464	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:42:22,20:22:788:20:715:-52.0341,0,-58.6015	0/1:48:24,24:24:864:24:855:-62.8207,0,-63.6331	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:158:62,96:62:2216:96:3425:-260.9,0,-152.142	0/1:132:60,72:60:2144:72:2568:-191.634,0,-153.492	0/1:135:43,92:43:1540:92:3284:-255.141,0,-98.254	0/0:84:83,1:83:2988:1:36:0,-21.6882,-265.553	0/1:53:22,31:22:792:31:1104:-83.716,0,-55.6511	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:211:76,135:76:2701:135:4831:-371.428,0,-179.816	0/1:138:56,82:56:2016:82:2923:-221.763,0,-140.171	0/1:17:12,5:12:432:5:176:-11.0675,0,-34.1037	0/1:302:141,161:141:5049:161:5752:-426.886,0,-363.642	0/1:119:59,60:59:2116:60:2156:-158.484,0,-154.886	0/1:107:55,52:55:1980:52:1864:-135.829,0,-146.264	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:153:62,91:62:2232:91:3244:-246.121,0,-155.086	0/1:230:73,157:73:2597:157:5598:-434.707,0,-164.741	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:94:93,1:93:3332:1:36:0,-24.6985,-296.499	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:179:81,98:81:2912:98:3508:-262.035,0,-208.43	0/1:35:16,19:16:576:19:684:-51.3543,0,-41.6389	0/1:30:18,12:18:648:12:428:-29.8279,0,-49.621	0/0:103:103,0:103:3666:0:0:0,-31.0061,-330.142	0/1:102:53,49:53:1885:49:1748:-126.899,0,-139.222	0/0:129:128,1:128:4584:1:32:0,-35.6336,-409.526	0/1:88:35,53:35:1260:53:1900:-144.787,0,-87.2148	0/1:108:37,71:37:1328:71:2544:-196.699,0,-87.311	0/0:180:179,0:179:6436:0:0:0,-53.8844,-578.964	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:116:53,62:53:1881:62:2224:-165.446,0,-134.589	0/1:81:40,41:40:1440:41:1470:-108.213,0,-105.514	0/1:13:8,5:8:288:5:171:-11.8121,0,-22.354	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:46:19,27:19:680:27:964:-73.2294,0,-47.6818	0/1:64:30,34:30:1080:34:1220:-90.8409,0,-78.2473	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:147:76,71:76:2728:71:2544:-184.959,0,-201.511	0/1:190:76,114:76:2713:114:4064:-308.75,0,-187.216	0/1:104:58,46:58:2080:46:1625:-115.23,0,-156.163	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:134:54,80:54:1936:80:2866:-217.839,0,-134.178	0/1:107:43,64:43:1544:64:2289:-174.059,0,-107.043	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:26:13,13:13:468:13:464:-34.2707,0,-34.6329	0/0:120:117,3:117:4204:3:108:0,-26.0484,-368.457	0/1:56:24,32:24:860:32:1142:-86.2314,0,-60.8642	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.514	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/1:79:32,47:32:1148:47:1684:-128.066,0,-79.8485	0/0:75:73,2:73:2624:2:72:0,-15.7405,-229.57	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:83:44,39:44:1584:39:1384:-99.8733,0,-117.866	0/0:174:174,0:174:6252:0:0:0,-52.3792,-562.772	0/1:41:23,18:23:824:18:638:-45.4062,0,-62.1411	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:39:19,20:19:684:20:707:-52.2144,0,-50.1502	0/0:92:91,1:91:3260:1:36:0,-24.0965,-290.022	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/1:55:29,26:29:1040:26:932:-67.6422,0,-77.3577	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:20:6,14:6:216:14:496:-38.949,0,-13.7699	0/1:42:23,19:23:813:19:676:-48.5247,0,-60.8458	0/1:41:16,25:16:576:25:900:-68.9788,0,-39.8304	0/0:101:101,0:101:3632:0:0:0,-30.404,-327.084	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738
chr09	16133253	.	GCA	ACT,GCT	212777	PASS	AB=0.463636,0.534796;ABP=76.2876,70.1068;AC=125,61;AF=0.672043,0.327957;AN=186;AO=5848,3422;CIGAR=1X1M1X,2M1X;DP=9286;DPB=9286;DPRA=0,1.36122;EPP=12033.3,1672.47;EPPR=5.18177;GTI=2;LEN=3,1;MEANALT=1.87097,2.14925;MQM=54.3558,59.9828;MQMR=60;NS=93;NUMALT=2;ODDS=1.64739;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=207134,122434;QR=28;RO=1;RPL=5770,2522;RPP=12033.3,1672.47;RPPR=5.18177;RPR=78,900;RUN=1,1;SAF=5848,3422;SAP=12701.8,7433.79;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,15,25:0:0:15,25:532,892:-116.371,-73.0739,-68.5585,-43.6519,0,-36.1262	1/1:164:0,162,2:0:0:162,2:5755,68:-517.119,-48.7669,0,-511.649,-42.9595,-511.047	1/1:56:0,56,0:0:0:56,0:1993,0:-179.369,-16.8577,0,-179.369,-16.8577,-179.369	1/1:129:0,129,0:0:0:129,0:4587,0:-412.534,-38.8329,0,-412.534,-38.8329,-412.534	1/2:81:0,32,49:0:0:32,49:1143,1764:-237.302,-144.293,-134.66,-93.3663,0,-78.6159	1/2:66:0,26,40:0:0:26,40:906,1436:-191.029,-117.496,-109.67,-73.8842,0,-61.843	1/1:139:0,139,0:0:0:139,0:4927,0:-442.723,-41.8432,0,-442.723,-41.8432,-442.723	1/2:147:0,66,81:0:0:66,81:2348,2894:-427.221,-236.18,-216.312,-191.398,0,-167.014	1/2:131:0,66,65:0:0:66,65:2347,2336:-381.884,-190.932,-171.064,-191.309,0,-171.742	1/2:128:0,59,69:0:0:59,69:2078,2467:-370.029,-201.512,-183.752,-168.87,0,-148.099	1/2:64:0,35,29:0:0:35,29:1240,1040:-185.985,-85.1845,-74.6484,-101.157,0,-92.4268	1/1:64:0,64,0:0:0:64,0:2286,0:-205.266,-19.2659,0,-205.266,-19.2659,-205.266	1/2:90:0,43,47:0:0:43,47:1519,1664:-259.109,-135.897,-122.953,-123.564,0,-109.416	1/2:63:0,37,26:0:0:37,26:1298,927:-180.978,-75.9206,-64.7825,-105.411,0,-97.5843	1/2:72:0,33,39:0:0:33,39:1178,1404:-210.856,-114.919,-104.985,-96.2947,0,-84.5546	1/2:47:0,29,18:0:0:29,18:1023,648:-136.336,-53.2333,-44.5035,-83.4591,0,-78.0406	1/2:77:0,44,33:0:0:44,33:1555,1184:-222.912,-96.9343,-83.689,-126.334,0,-116.4	1/2:55:0,34,21:0:0:34,21:1217,747:-160.323,-61.2327,-50.9977,-99.447,0,-93.1254	1/1:34:0,34,0:0:0:34,0:1186,0:-106.517,-10.235,0,-106.517,-10.235,-106.517	1/2:184:0,67,117:0:0:67,117:2376,4200:-536.19,-342.959,-322.79,-193.586,0,-158.366	1/2:171:0,77,94:0:0:77,94:2717,3372:-495.799,-275.399,-252.219,-220.755,0,-192.458	1/2:128:0,48,80:0:0:48,80:1703,2854:-371.363,-233.015,-218.565,-138.703,0,-114.621	1/1:95:0,93,1:0:0:93,1:3307,36:-296.753,-27.9958,0,-293.815,-25.0184,-293.514	1/2:189:0,94,94:0:0:94,94:3330,3368:-545.025,-274.68,-246.383,-270.341,0,-242.045	1/1:61:0,61,0:0:0:61,0:2144,0:-192.918,-18.3628,0,-192.918,-18.3628,-192.918	1/2:319:0,139,180:0:0:139,180:4917,6415:-922.924,-523.253,-481.409,-400.026,0,-345.841	1/2:170:0,64,106:0:0:64,106:2268,3799:-494.735,-310.198,-290.932,-184.893,0,-152.984	1/2:45:0,19,26:0:0:19,26:681,932:-131.768,-76.3721,-70.6525,-55.7541,0,-47.9273	1/2:238:0,93,145:0:0:93,145:3276,5212:-691.786,-425.567,-397.571,-266.573,0,-222.924	1/2:114:0,52,62:0:0:52,62:1848,2224:-332.167,-181.76,-166.107,-150.763,0,-132.099	1/2:105:0,38,66:0:0:38,66:1353,2351:-301.884,-191.729,-180.29,-110.257,0,-90.3892	1/1:7:0,7,0:0:0:7,0:252,0:-23.0052,-2.10721,0,-23.0052,-2.10721,-23.0052	1/2:14:0,2,12:0:0:2,12:72,428:-41.115,-35.2464,-34.6444,-6.22762,0,-2.61526	1/1:1:0,1,0:0:0:1,0:36,0:-3.59457,-0.30103,0,-3.59457,-0.30103,-3.59457	.:.:.:.:.:.:.:.	1/2:4:0,1,3:0:0:1,3:36,104:-11.737,-8.79971,-8.49868,-3.29354,0,-2.39045	1/2:225:0,127,97:0:0:127,97:4521,3466:-650.147,-282.591,-244.361,-367.552,0,-338.352	1/2:266:0,154,109:0:0:154,109:5439,3903:-760.211,-318.39,-272.032,-441.914,0,-409.102	1/2:58:0,32,26:0:0:32,26:1124,936:-167.983,-76.7327,-67.0997,-91.6056,0,-83.7788	1/1:1:0,1,0:0:0:1,0:36,0:-3.59457,-0.30103,0,-3.59457,-0.30103,-3.59457	1/1:83:0,82,1:0:0:82,1:2891,36:-259.625,-24.6845,0,-256.687,-21.3872,-256.386	1/2:44:0,18,26:0:0:18,26:646,936:-129.367,-76.7327,-71.3141,-52.9936,0,-45.1668	1/2:196:0,95,101:0:0:95,101:3353,3601:-565.446,-293.892,-265.294,-271.908,0,-241.503	1/2:115:0,59,55:0:0:59,55:2069,1976:-328.72,-161.279,-143.518,-167.515,0,-150.959	1/2:73:0,41,32:0:0:41,32:1444,1144:-210.965,-93.6366,-81.2943,-117.683,0,-108.05	1/1:107:0,107,0:0:0:107,0:3768,0:-337.85,-32.2102,0,-337.85,-32.2102,-337.85	1/2:105:0,48,57:0:0:48,57:1702,2048:-305.933,-167.433,-152.983,-138.857,0,-121.698	1/1:143:0,142,0:0:0:142,0:5048,0:-453.394,-42.7463,0,-453.394,-42.7463,-453.394	1/2:160:0,62,97:0:0:62,97:2172,3476:-459.874,-283.492,-264.828,-176.375,0,-147.176	1/2:112:0,57,55:0:0:57,55:2039,1954:-325.505,-159.577,-142.418,-166.283,0,-149.727	1/1:146:0,146,0:0:0:146,0:5168,0:-463.81,-43.9504,0,-463.81,-43.9504,-463.81	1/2:13:0,3,10:0:0:3,10:108,360:-38.5333,-29.734,-28.8309,-9.15876,0,-6.14846	1/1:114:0,114,0:0:0:114,0:4042,0:-363.239,-34.3174,0,-363.239,-34.3174,-363.239	1/1:32:0,32,0:0:0:32,0:1137,0:-102.436,-9.63296,0,-102.436,-9.63296,-102.436	1/2:8:0,4,4:0:0:4,4:144,140:-23.4816,-11.7405,-10.5363,-12.0958,0,-10.8917	1/2:136:0,51,85:0:0:51,85:1777,3039:-391.918,-248.152,-232.799,-144.117,0,-118.529	1/2:24:0,18,6:0:0:18,6:646,216: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chr09	16148790	.	G	A	84366	PASS	AB=0.49329;ABP=4.46727;AC=128;AF=0.680851;AN=188;AO=4159;CIGAR=1X;DP=6065;DPB=6065;DPRA=65.2043;EPP=9034.16;EPPR=4130.98;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9858;MQMR=59.9984;NS=94;NUMALT=1;ODDS=2.96811;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148979;QR=67661;RO=1901;RPL=4159;RPP=9034.16;RPPR=4130.98;RPR=0;RUN=1;SAF=0;SAP=9034.16;SAR=4159;SRF=0;SRP=4130.98;SRR=1901;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:79:1,77:1:32:77:2741:-243.712,-20.6209,0	1/1:171:0,171:0:0:171:6125:-551.349,-51.4761,0	1/1:177:0,177:0:0:177:6344:-571.05,-53.2823,0	0/1:53:25,28:25:865:28:1008:-75.0818,0,-62.2086	0/1:43:10,33:10:360:33:1184:-93.924,0,-19.8	1/1:119:0,119:0:0:119:4263:-383.847,-35.8226,0	0/1:79:42,37:42:1488:37:1324:-95.6807,0,-110.433	0/1:37:26,11:26:920:11:392:-24.4819,0,-71.9789	0/1:71:31,40:31:1112:40:1420:-106.724,0,-79.0182	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	1/1:37:0,37:0:0:37:1309:-118.11,-11.1381,0	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/1:52:28,24:28:992:24:851:-61.2559,0,-73.9408	0/1:22:16,6:16:576:6:212:-12.8021,0,-45.5523	0/1:27:18,9:18:640:9:324:-21.378,0,-49.8015	0/1:44:21,23:21:752:23:825:-61.3283,0,-54.7609	0/1:25:16,9:16:564:9:324:-21.9801,0,-43.5646	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:162:74,88:74:2629:88:3150:-234.87,0,-188.09	0/1:85:48,37:48:1720:37:1328:-94.2347,0,-129.498	0/1:141:99,42:99:3532:42:1508:-93.5694,0,-275.645	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:48:20,28:20:716:28:1008:-76.5869,0,-50.3183	1/1:36:0,36:0:0:36:1269:-114.511,-10.8371,0	0/1:208:103,105:103:3664:105:3757:-275.715,0,-267.352	0/1:129:66,63:66:2356:63:2264:-165.189,0,-173.466	0/1:13:5,8:5:180:8:286:-22.1721,0,-12.6387	0/1:209:115,94:115:4108:94:3376:-241.14,0,-306.99	0/1:84:39,45:39:1396:45:1620:-120.803,0,-100.653	0/1:85:45,40:45:1600:40:1440:-104.31,0,-118.703	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:81:40,41:40:1424:41:1464:-107.673,0,-104.074	0/1:143:87,55:87:3096:55:1964:-133.929,0,-235.763	0/1:31:19,12:19:676:12:432:-29.8893,0,-51.8361	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:117:5,112:5:176:112:4012:-345.084,-19.0355,0	0/1:23:14,9:14:492:9:320:-22.2187,0,-37.6887	0/1:103:46,57:46:1644:57:2044:-153.226,0,-117.243	0/1:32:18,14:18:625:14:500:-35.7032,0,-46.9395	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:73:39,34:39:1388:34:1220:-88.1316,0,-103.244	1/1:151:1,150:1:36:150:5371:-479.923,-41.8573,0	0/1:74:25,49:25:892:49:1747:-135.238,0,-58.3235	0/1:85:34,51:34:1186:51:1828:-139.213,0,-81.4532	1/1:149:0,149:0:0:149:5344:-481.084,-44.8535,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:105:0,104:0:0:104:3732:-335.72,-31.3071,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:81:41,40:41:1464:40:1419:-103.624,0,-107.673	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:66:19,47:19:676:47:1688:-132.339,0,-41.3	0/1:65:36,29:36:1265:29:1040:-74.3474,0,-94.5836	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:157:65,92:65:2328:92:3308:-250.676,0,-162.518	0/1:137:68,69:68:2432:69:2480:-182.212,0,-177.895	0/1:56:26,30:26:928:30:1080:-80.6556,0,-66.9806	1/1:66:1,65:1:36:65:2317:-205.191,-16.2697,0	0/1:103:66,36:66:2352:36:1288:-85.1976,0,-180.914	0/1:90:58,32:58:2064:32:1152:-76.8974,0,-158.939	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	1/1:62:1,61:1:36:61:2181:-192.957,-15.0656,0	0/1:61:30,31:30:1076:31:1108:-81.6682,0,-78.79	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:85:0,85:0:0:85:3040:-273.83,-25.5876,0	0/1:60:23,37:23:820:37:1320:-101.04,0,-56.0607	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	1/1:124:0,124:0:0:124:4456:-401.209,-37.3277,0	0/1:105:42,63:42:1480:63:2260:-172.054,0,-101.886	1/1:83:1,82:1:36:82:2948:-261.955,-21.3872,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:111:52,59:52:1848:59:2108:-156.575,0,-133.186	1/1:177:1,176:1:36:176:6300:-563.495,-49.684,0	0/1:48:24,24:24:856:24:864:-63.6331,0,-62.9117	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:21:15,6:15:536:6:212:-13.1032,0,-42.2532	1/1:59:2,57:2:72:57:2032:-176.316,-10.924,0	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	0/1:29:13,16:13:452:16:576:-43.4451,0,-32.2812	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:58:28,30:28:991:30:1070:-79.1218,0,-72.0438	0/1:28:15,13:15:524:13:468:-34.0308,0,-39.0608	1/1:131:0,130:0:0:130:4641:-417.492,-39.1339,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0
chr09	16200925	.	A	T	139254	PASS	AB=0.468571;ABP=61.5656;AC=126;AF=0.670213;AN=188;AO=6959;CIGAR=1X;DP=10603;DPB=10603;DPRA=0;EPP=15105.6;EPPR=7878.94;GTI=0;LEN=1;MEANALT=1.09574;MQM=59.9174;MQMR=59.9397;NS=94;NUMALT=1;ODDS=0.957878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=248502;QR=129781;RO=3631;RPL=1;RPP=15105.6;RPPR=7878.94;RPR=6958;RUN=1;SAF=0;SAP=15114.3;SAR=6959;SRF=0;SRP=7887.63;SRR=3631;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:19,13:19:680:13:464:-32.4645,0,-51.8962	1/1:145:0,145:0:0:145:5187:-466.967,-43.6494,0	1/1:119:0,119:0:0:119:4219:-379.892,-35.8226,0	1/1:274:0,274:0:0:274:9738:-876.344,-82.4822,0	0/1:62:30,32:30:1072:32:1139:-84.1545,0,-78.1286	0/1:66:47,19:47:1680:19:677:-41.1606,0,-130.841	1/1:193:0,193:0:0:193:6914:-622.288,-58.0988,0	0/1:189:126,63:126:4486:63:2256:-145.304,0,-347.013	0/1:81:32,47:32:1143:47:1675:-126.895,0,-79.0377	0/1:125:77,48:77:2755:48:1698:-115.477,0,-210.563	0/1:111:62,49:62:2223:49:1760:-124.332,0,-166.919	1/1:104:0,104:0:0:104:3702:-333.382,-31.3071,0	0/1:75:39,36:39:1388:36:1291:-93.9164,0,-102.642	0/1:99:53,46:53:1874:46:1636:-117.727,0,-139.133	0/1:72:41,31:41:1455:31:1112:-78.7172,0,-109.343	0/1:65:33,32:33:1179:32:1142:-83.5225,0,-86.8503	0/1:78:39,39:39:1395:39:1365:-99.6661,0,-102.368	0/1:64:34,29:34:1216:29:1040:-74.5897,0,-90.4219	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	0/1:299:156,140:156:5577:140:4996:-360.321,0,-412.588	0/1:111:55,56:55:1976:56:1987:-145.602,0,-144.7	0/1:160:103,57:103:3646:57:2052:-136.787,0,-280.178	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:82:42,40:42:1504:40:1432:-104.493,0,-110.97	1/1:91:0,91:0:0:91:3256:-293.261,-27.3937,0	0/1:459:232,227:232:8315:227:8097:-590.541,0,-610.183	0/1:189:104,85:104:3728:85:3040:-216.933,0,-278.826	0/1:33:20,13:20:712:13:468:-32.5257,0,-54.4727	0/1:316:169,147:169:6052:147:5236:-376.252,0,-449.028	0/1:152:80,72:80:2872:72:2565:-185.342,0,-212.96	0/1:140:82,58:82:2928:58:2076:-144.966,0,-221.608	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:33:21,12:21:752:12:421:-28.288,0,-58.0723	1/1:4:0,4:0:0:4:144:-13.3132,-1.20412,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:19:8,11:8:288:11:388:-29.5378,0,-20.5478	0/1:198:95,103:95:3395:103:3696:-273.203,0,-246.16	0/1:193:105,88:105:3761:88:3164:-226.879,0,-280.58	0/1:106:48,56:48:1724:56:1986:-147.346,0,-123.778	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:168:4,164:4:144:164:5872:-515.273,-37.2594,0	0/1:59:23,36:23:819:36:1279:-97.64,0,-56.2708	0/1:104:58,46:58:2084:46:1648:-117.301,0,-156.523	0/1:75:41,34:41:1468:34:1205:-86.1751,0,-109.839	0/1:78:31,47:31:1112:47:1672:-127.287,0,-76.911	1/1:80:0,80:0:0:80:2851:-256.828,-24.0824,0	0/1:136:66,70:66:2359:70:2508:-185.032,0,-171.628	1/1:229:4,225:4:135:225:8036:-710.648,-56.4534,0	0/1:129:62,67:62:2210:67:2404:-177.784,0,-160.331	0/1:104:66,37:66:2348:37:1320:-87.7361,0,-180.211	1/1:198:0,198:0:0:198:7081:-637.347,-59.6039,0	0/1:22:5,17:5:180:17:612:-48.7908,0,-9.9294	1/1:143:2,141:2:72:141:5034:-446.37,-36.2106,0	1/1:57:0,57:0:0:57:2027:-182.702,-17.1587,0	0/1:32:13,19:13:468:19:675:-51.4446,0,-32.8267	0/1:134:60,74:60:2102:74:2637:-197.228,0,-148.404	0/1:29:14,15:14:504:15:536:-39.8449,0,-36.9682	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:34:23,11:23:828:11:396:-25.7468,0,-64.6091	0/1:106:58,48:58:2084:48:1690:-120.473,0,-154.816	0/1:147:94,53:94:3355:53:1891:-126.216,0,-257.915	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:226:111,115:111:3973:115:4116:-302.564,0,-289.726	0/1:227:115,111:115:4119:111:3973:-289.366,0,-302.501	0/1:115:52,63:52:1864:63:2246:-167.783,0,-133.421	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	0/1:175:70,105:70:2497:105:3756:-285.56,0,-172.301	0/1:167:121,46:121:4335:46:1656:-99.0564,0,-340.052	1/1:59:2,57:2:72:57:2048:-177.755,-10.924,0	1/1:108:0,108:0:0:108:3861:-347.666,-32.5112,0	0/1:86:57,29:57:2013:29:1044:-68.3862,0,-155.545	0/1:51:24,27:24:860:27:970:-72.2652,0,-62.3693	1/1:150:0,150:0:0:150:5352:-481.528,-45.1545,0	0/1:66:37,29:37:1320:29:1031:-73.1884,0,-99.234	1/1:146:0,146:0:0:146:5200:-468.141,-43.9504,0	1/1:187:1,186:1:36:186:6639:-593.978,-52.6943,0	0/1:159:63,96:63:2260:96:3409:-259.16,0,-155.799	1/1:151:0,151:0:0:151:5396:-485.772,-45.4555,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:157:1,156:1:36:156:5608:-501.236,-43.6634,0	0/1:113:64,49:64:2300:49:1756:-124.308,0,-173.244	1/1:209:0,208:0:0:208:7429:-668.101,-62.6142,0	0/1:127:71,55:71:2548:55:1954:-137.845,0,-191.281	1/1:90:0,90:0:0:90:3215:-289.571,-27.0927,0	0/1:48:14,34:14:495:34:1220:-95.6574,0,-30.4336	1/1:169:2,167:2:72:167:5957:-529.398,-44.0373,0	0/1:49:17,32:17:612:32:1144:-88.519,0,-40.6621	0/1:97:52,45:52:1868:45:1612:-116.17,0,-139.199	1/1:93:0,93:0:0:93:3314:-298.478,-27.9958,0	0/1:76:38,38:38:1355:38:1355:-99.3714,0,-99.1005	0/1:146:79,67:79:2802:67:2383:-170.777,0,-208.47	0/1:72:52,19:52:1864:19:672:-39.0742,0,-146.306	1/1:113:0,113:0:0:113:4049:-364.596,-34.0164,0	1/1:104:0,104:0:0:104:3716:-334.642,-31.3071,0
chr09	16227467	.	T	C	127029	PASS	AB=0.527747;ABP=38.9201;AC=126;AF=0.670213;AN=188;AO=6313;CIGAR=1X;DP=8871;DPB=8871;DPRA=0;EPP=13711.5;EPPR=5546.78;GTI=2;LEN=1;MEANALT=1.01064;MQM=54.0554;MQMR=59.964;NS=94;NUMALT=1;ODDS=5.45079;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224584;QR=91421;RO=2557;RPL=6313;RPP=13711.5;RPPR=5546.78;RPR=0;RUN=1;SAF=6313;SAP=13711.5;SAR=0;SRF=2557;SRP=5555.47;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:26,33:26:932:33:1175:-87.9714,0,-66.4381	1/1:38:0,38:0:0:38:1360:-122.218,-11.4391,0	1/1:154:1,153:1:36:153:5420:-482.416,-42.7603,0	1/1:331:1,330:1:36:330:11738:-1049.84,-96.0427,0	0/1:26:16,10:16:576:10:360:-24.8711,0,-44.3482	0/1:64:32,32:32:1137:32:1152:-83.6672,0,-83.371	1/1:137:0,137:0:0:137:4883:-438.794,-41.2411,0	0/1:120:63,57:63:2251:57:2022:-145.505,0,-166.729	0/1:108:55,53:55:1961:53:1891:-137.501,0,-144.252	0/1:64:32,32:32:1144:32:1139:-83.4755,0,-84.0036	0/1:67:44,23:44:1567:23:787:-50.8683,0,-121.152	1/1:79:0,79:0:0:79:2789:-249.463,-23.7814,0	0/1:65:34,31:34:1224:31:1099:-79.4022,0,-90.8919	0/1:67:31,36:31:1100:36:1253:-92.4483,0,-79.1413	0/1:70:38,32:38:1352:32:1152:-82.7295,0,-100.908	0/1:58:39,19:39:1391:19:676:-43.6082,0,-108.028	0/1:29:13,16:13:468:16:567:-42.515,0,-33.7298	0/1:34:15,19:15:532:19:680:-51.1434,0,-37.9781	1/1:34:0,34:0:0:34:1211:-108.932,-10.235,0	0/1:94:29,65:29:1044:65:2307:-179.124,0,-65.978	0/1:211:89,122:89:3184:122:4346:-325.63,0,-223.267	0/1:84:51,33:51:1836:33:1165:-79.8187,0,-140.234	1/1:138:3,135:3:108:135:4801:-421.286,-31.467,0	0/1:64:31,33:31:1103:33:1167:-85.8619,0,-80.3139	1/1:65:0,65:0:0:65:2309:-207.152,-19.567,0	0/1:260:120,140:120:4300:140:4972:-368.917,0,-308.853	0/1:235:114,121:114:4075:121:4327:-318.13,0,-296.191	0/1:31:16,15:16:576:15:536:-38.8641,0,-42.8431	0/1:274:135,139:135:4852:139:4939:-361.623,0,-354.349	0/1:101:32,69:32:1121:69:2450:-189.779,0,-70.7917	0/1:116:47,69:47:1673:69:2457:-185.865,0,-115.936	1/1:9:0,9:0:0:9:320:-28.9769,-2.70927,0	0/1:19:8,11:8:284:11:376:-28.3933,0,-20.1838	1/1:7:0,7:0:0:7:244:-22.2514,-2.10721,0	0/1:11:5,6:5:176:6:216:-16.4294,0,-12.868	0/1:13:8,5:8:269:5:176:-11.9623,0,-20.6227	0/1:217:111,106:111:3992:106:3745:-271.448,0,-294.145	0/1:107:58,49:58:2076:49:1741:-123.821,0,-154.9	0/1:60:30,30:30:1076:30:1065:-77.6786,0,-79.0911	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	1/1:143:5,138:5:176:138:4929:-425.21,-26.8623,0	0/1:52:34,18:34:1207:18:644:-42.0602,0,-93.2771	0/1:137:38,99:38:1368:99:3507:-273.757,0,-82.1797	0/1:42:20,22:20:720:22:792:-58.9108,0,-52.4855	0/1:45:27,18:27:968:18:631:-43.5316,0,-73.891	1/1:157:0,157:0:0:157:5602:-503.617,-47.2617,0	0/1:113:51,62:51:1819:62:2215:-163.523,0,-129.974	1/1:200:1,199:1:36:199:7072:-630.591,-56.6077,0	0/1:100:42,58:42:1473:58:2071:-155.706,0,-102.728	0/1:105:33,72:33:1188:72:2563:-198.842,0,-75.6204	1/1:166:1,165:1:36:165:5915:-528.51,-46.3727,0	0/1:8:1,7:1:36:7:248:-20.1558,0,-1.19003	1/1:111:0,111:0:0:111:3940:-352.694,-33.4143,0	1/1:72:0,72:0:0:72:2562:-230.379,-21.6742,0	0/1:10:4,6:4:140:6:216:-16.7305,0,-9.93428	0/1:142:62,80:62:2220:80:2863:-213.738,0,-157.318	0/1:52:25,27:25:883:27:968:-71.6379,0,-64.1339	0/1:10:2,8:2:72:8:288:-23.2498,0,-3.82642	0/1:13:6,7:6:208:7:252:-19.1091,0,-15.1457	0/1:102:42,60:42:1504:60:2144:-162.019,0,-104.95	0/1:100:48,52:48:1720:52:1849:-136.373,0,-124.983	1/1:7:0,7:0:0:7:252:-23.0124,-2.10721,0	0/1:154:67,87:67:2408:87:3105:-232.756,0,-170.618	0/1:152:65,87:65:2315:87:3091:-232.076,0,-162.853	0/1:58:21,37:21:752:37:1319:-100.082,0,-50.5465	1/1:88:2,86:2:72:86:3074:-269.432,-19.6539,0	0/1:216:53,163:53:1899:163:5760:-452.004,0,-106.165	0/1:164:103,61:103:3663:61:2182:-146.081,0,-280.506	1/1:43:1,42:1:36:42:1493:-130.628,-9.34602,0	1/1:43:2,41:2:72:41:1444:-123.106,-6.10757,0	0/1:45:22,23:22:792:23:819:-60.4649,0,-58.0593	0/1:24:12,12:12:432:12:432:-31.7993,0,-31.9965	1/1:202:0,202:0:0:202:7191:-644.881,-60.8081,0	0/1:94:41,53:41:1468:53:1887:-140.754,0,-104.119	1/1:151:0,150:0:0:150:5361:-480.53,-45.1545,0	1/1:177:0,177:0:0:177:6323:-567.668,-53.2823,0	0/1:105:71,34:71:2556:34:1211:-77.4217,0,-198.681	1/1:98:0,98:0:0:98:3479:-311.539,-29.5009,0	0/1:11:7,4:7:252:4:144:-9.5958,0,-19.7176	1/1:95:0,95:0:0:95:3405:-305.614,-28.5979,0	0/1:107:67,40:67:2412:40:1418:-95.1813,0,-185.126	1/1:236:0,236:0:0:236:8375:-751.771,-71.0431,0	0/1:60:33,27:33:1171:27:950:-67.3068,0,-87.6349	1/1:64:0,64:0:0:64:2272:-203.712,-19.2659,0	0/1:53:23,30:23:824:30:1062:-79.8654,0,-58.5287	1/1:128:3,125:3:108:125:4448:-389.532,-28.4567,0	0/1:30:16,14:16:576:14:480:-34.3366,0,-43.1441	0/1:78:39,39:39:1392:39:1400:-102.296,0,-102.091	1/1:76:1,75:1:36:75:2647:-234.087,-19.28,0	0/1:46:22,24:22:780:24:845:-61.4012,0,-56.6757	0/1:147:73,74:73:2607:74:2617:-190.925,0,-190.591	0/1:67:44,23:44:1572:23:820:-53.9047,0,-121.6	1/1:125:0,125:0:0:125:4459:-400.9,-37.6288,0	1/1:125:0,125:0:0:125:4463:-400.645,-37.6288,0
chr09	16240792	.	ATACT	GTACT,GTACA	174488	PASS	AB=0.517805,0.475654;ABP=18.1664,31.3468;AC=126,62;AF=0.670213,0.329787;AN=188;AO=5763,2624;CIGAR=1X4M,1X3M1X;DP=8438;DPB=8438.8;DPRA=0,1.05073;EPP=12517.2,5700.95;EPPR=13.8677;GTI=0;LEN=1,5;MEANALT=2.11702,2.4697;MQM=59.9767,59.702;MQMR=60;NS=94;NUMALT=2;ODDS=1.06265;PAIRED=0,0;PAIREDR=0;PAO=0.5,3.5;PQA=18,126;PQR=0;PRO=0;QA=205169,92371;QR=180;RO=5;RPL=0,0;RPP=12517.2,5700.95;RPPR=13.8677;RPR=5763,2624;RUN=1,1;SAF=0,0;SAP=12517.2,5700.95;SAR=5763,2624;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,8,18:0:0:8,18:288,647:-76.6379,-53.1384,-50.7302,-23.8592,0,-18.4406	1/1:205:0,202,2:0:0:202,2:7218,72:-649.3,-60.8081,0,-643.425,-54.9332,-642.823	1/1:113:0,113,0:0:0:113,0:4014,0:-361.446,-34.0164,0,-361.446,-34.0164,-361.446	1/1:169:0,169,0:0:0:169,0:6029,0:-542.716,-50.8741,0,-542.716,-50.8741,-542.716	1/2:30:0,17,13:0:0:17,13:608,459:-87.311,-37.7314,-32.6139,-49.9345,0,-46.0211	1/2:46:0,23,23:0:0:23,23:828,811:-133.951,-66.3866,-59.4629,-67.9204,0,-60.9967	1/1:122:0,122,0:0:0:122,0:4366,0:-393.111,-36.7257,0,-393.111,-36.7257,-393.111	1/2:155:0,69,83:0:0:69,83:2476,2942:-441.62,-239.654,-218.883,-201.963,0,-176.977	1/2:103:0,65,38:0:0:65,38:2328,1345:-299.757,-109.911,-90.3443,-190.201,0,-178.762	1/2:94:0,57,36:0:0:57,36:2040,1237:-266.851,-100.486,-83.3271,-166.412,0,-155.575	1/2:163:0,75,86:0:0:75,86:2666,3022:-463.192,-245.936,-223.359,-217.354,0,-191.466	1/1:67:0,67,0:0:0:67,0:2368,0:-213.378,-20.169,0,-213.378,-20.169,-213.378	1/2:54:0,29,25:0:0:29,25:1040,869:-155.825,-70.9927,-62.2628,-85.1845,0,-77.6587	1/2:124:2,61,59:2:72:61,59:2165,2079:-339.144,-163.347,-150.859,-170.518,0,-158.632	1/2:46:0,29,17:0:0:29,17:1044,592:-133.68,-48.488,-39.7581,-85.5449,0,-80.4274	1/2:80:0,43,37:0:0:43,37:1520,1326:-231.841,-108.051,-95.1069,-123.785,0,-112.647	1/2:131:1,55,75:1:36:55,75:1968,2606:-369.087,-208.903,-195.284,-157.541,0,-137.901	1/2:67:0,30,36:0:0:30,36:1071,1276:-191.221,-103.906,-94.8748,-87.311,0,-76.4739	1/1:48:0,48,0:0:0:48,0:1704,0:-153.646,-14.4494,0,-153.646,-14.4494,-153.646	1/2:91:0,38,53:0:0:38,53:1364,1857:-262.664,-151.397,-139.958,-111.622,0,-95.667	1/2:104:0,58,45:0:0:58,45:2076,1578:-297.676,-128.378,-110.919,-169.32,0,-155.774	1/2:59:1,20,38:1:36:20,38:712,1328:-162.813,-105.081,-101.998,-55.0888,0,-46.5873	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/2:71:0,28,42:0:0:28,42:976,1476:-199.506,-120.135,-111.706,-79.3714,0,-66.7282	1/1:29:0,29,0:0:0:29,0:1031,0:-93.1026,-8.72987,0,-93.1026,-8.72987,-93.1026	1/2:200:0,121,79:0:0:121,79:4331,2801:-581.37,-228.187,-191.763,-353.178,0,-329.397	1/2:210:0,120,88:0:0:120,88:4287,3101:-601.973,-252.443,-216.32,-349.524,0,-323.034	1/2:34:0,22,12:0:0:22,12:773,421:-97.526,-34.61,-27.9874,-63.2668,0,-59.6545	1/2:191:0,113,77:0:0:113,77:4044,2724:-551.672,-221.895,-187.878,-329.851,0,-306.672	1/2:179:0,102,74:0:0:102,74:3613,2595:-505.489,-211.173,-180.468,-294.318,0,-272.042	1/2:90:0,47,42:0:0:47,42:1688,1483:-258.482,-120.779,-106.631,-137.718,0,-125.075	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/2:33:0,15,18:0:0:15,18:540,638:-96.3942,-52.3305,-47.815,-44.4211,0,-39.0025	1/1:24:0,24,0:0:0:24,0:843,0:-76.188,-7.22472,0,-76.188,-7.22472,-76.188	1/2:14:0,8,6:0:0:8,6:288,212:-41.1205,-17.6173,-15.2091,-23.8592,0,-22.053	1/2:13:0,10,3:0:0:10,3:360,102:-38.0028,-8.61329,-5.60299,-29.734,0,-28.8309	1/2:151:0,84,65:0:0:84,65:3008,2295:-432.215,-186.905,-161.619,-245.334,0,-225.768	1/2:144:0,71,72:0:0:71,72:2544,2542:-414.558,-207.075,-185.702,-207.616,0,-185.942	1/2:106:0,53,53:0:0:53,53:1873,1861:-304.352,-151.812,-135.857,-152.892,0,-136.938	1/1:6:0,6,0:0:0:6,0:207,0:-18.9669,-1.80618,0,-18.9669,-1.80618,-18.9669	1/1:138:0,137,0:0:0:137,0:4854,0:-436.656,-41.2411,0,-436.656,-41.2411,-436.656	1/2:40:0,22,17:0:0:22,17:774,611:-112.867,-49.8647,-43.242,-63.0172,0,-57.8996	1/2:121:0,62,59:0:0:62,59:2173,2091:-347.454,-170.637,-151.973,-177.169,0,-159.408	1/2:72:0,37,35:0:0:37,35:1320,1240:-208.973,-101.364,-90.2262,-107.964,0,-97.4278	1/2:68:0,37,31:0:0:37,31:1308,1107:-197.135,-90.6068,-79.4687,-106.883,0,-97.5515	1/1:71:0,71,0:0:0:71,0:2524,0:-227.41,-21.3731,0,-227.41,-21.3731,-227.41	1/2:63:0,36,27:0:0:36,27:1279,958:-182.624,-78.4039,-67.5668,-104.575,0,-96.4476	1/1:155:0,154,0:0:0:154,0:5501,0:-494.933,-46.3586,0,-494.933,-46.3586,-494.933	1/2:95:0,52,43:0:0:52,43:1832,1517:-273.031,-123.879,-108.226,-149.504,0,-136.56	1/2:161:0,85,76:0:0:85,76:3052,2688:-468.249,-219.283,-193.696,-249.321,0,-226.443	1/1:126:0,126,0:0:0:126,0:4476,0:-403.009,-37.9298,0,-403.009,-37.9298,-403.009	1/2:24:0,14,10:0:0:14,10:495,359:-69.9554,-29.6433,-25.4289,-40.6686,0,-37.6583	1/1:139:0,138,0:0:0:138,0:4943,0:-444.659,-41.5421,0,-444.659,-41.5421,-444.659	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:31:0,18,13:0:0:18,13:635,463:-89.7966,-38.0927,-32.6742,-52.0584,0,-48.145	1/2:102:0,61,40:0:0:61,40:2145,1425:-290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chr09	16325002	.	TACTCA	TTCTCT,TACTCT	213399	PASS	AB=0.522975,0.46888;ABP=32.8446,57.7476;AC=126,62;AF=0.670213,0.329787;AN=188;AO=7199,3056;CIGAR=1M1X3M1X,5M1X;DP=10325;DPB=10329.2;DPRA=0,1.01523;EPP=15635.4,6639.03;EPPR=9.52472;GTI=2;LEN=6,1;MEANALT=2.31915,2.65152;MQM=59.6822,59.9617;MQMR=60;NS=94;NUMALT=2;ODDS=4.80037;PAIRED=0,0;PAIREDR=0;PAO=7.33333,7.33333;PQA=264,264;PQR=36;PRO=1;QA=254152,108664;QR=90;RO=3;RPL=7199,3056;RPP=15635.4,6639.03;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=7199,3056;SAP=15635.4,6639.03;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:68:0,43,25:0:0:43,25:1524,892:-197.175,-73.0232,-60.079,-124.457,0,-116.931	1/1:179:0,176,0:0:0:176,0:6216,0:-559.161,-52.9813,0,-559.161,-52.9813,-559.161	1/1:137:0,133,0:0:0:133,0:4663,0:-419.203,-40.037,0,-419.203,-40.037,-419.203	1/1:286:0,286,0:0:0:286,0:10098,0:-908.037,-86.0946,0,-908.037,-86.0946,-908.037	1/2:94:0,55,38:0:0:55,38:1948,1364:-269.778,-111.107,-94.5508,-158.514,0,-147.075	1/2:58:0,34,24:0:0:34,24:1213,849:-168.39,-69.504,-59.2689,-99.2412,0,-92.0165	1/1:116:0,115,0:0:0:115,0:4052,0:-364.525,-34.6185,0,-364.525,-34.6185,-364.525	1/2:158:0,80,76:0:0:80,76:2849,2693:-451.546,-219.364,-195.281,-232.177,0,-209.299	1/2:152:0,89,63:0:0:89,63:3125,2229:-436.218,-181.908,-155.116,-254.663,0,-235.698	1/2:76:0,45,29:0:0:45,29:1614,1036:-216.111,-84.4737,-70.9274,-131.644,0,-122.915	1/2:25:0,11,14:0:0:11,14:391,504:-73.3436,-41.4837,-38.1723,-32.2172,0,-28.0028	1/1:51:0,51,0:0:0:51,0:1791,0:-161.466,-15.3525,0,-161.466,-15.3525,-161.466	1/2:78:0,39,39:0:0:39,39:1374,1395:-225.96,-114.108,-102.368,-112.207,0,-100.467	1/2:35:0,21,14:0:0:21,14:730,496:-100.103,-40.7598,-34.4382,-59.6948,0,-55.4804	1/2:64:0,29,35:0:0:29,35:1036,1247:-186.463,-101.998,-93.2682,-84.8216,0,-74.2856	1/2:58:0,28,30:0:0:28,30:987,1076:-168.481,-88.122,-79.6931,-80.7144,0,-71.6835	1/2:46:0,18,28:0:0:18,28:634,1004:-133.861,-82.247,-76.8285,-51.9685,0,-43.5397	1/2:41:0,26,15:0:0:26,15:926,540:-119.883,-44.4211,-36.5943,-75.8201,0,-71.3047	1/1:35:0,35,0:0:0:35,0:1224,0:-110.457,-10.5361,0,-110.457,-10.5361,-110.457	1/2:291:0,161,128:0:0:161,128:5679,4536:-831.761,-369.49,-321.024,-462.239,0,-423.707	1/2:153:0,82,71:0:0:82,71:2886,2508:-439.492,-204.598,-179.914,-235.246,0,-213.873	1/2:127:0,48,79:0:0:48,79:1709,2820:-369.544,-230.258,-215.809,-139.642,0,-115.861	1/1:64:0,64,0:0:0:64,0:2241,0:-201.949,-19.2659,0,-201.949,-19.2659,-201.949	1/2:77:0,42,34:0:0:42,34:1464,1224:-218.924,-99.8727,-87.2294,-119.046,0,-108.811	1/1:84:0,83,0:0:0:83,0:2902,0:-260.913,-24.9855,0,-260.913,-24.9855,-260.913	1/2:338:0,205,133:0:0:205,133:7236,4720:-974.035,-384.817,-323.106,-589.467,0,-549.43	1/2:247:0,120,127:0:0:120,127:4251,4506:-713.611,-367.478,-331.354,-346.487,0,-308.256	1/2:32:0,10,22:0:0:10,22:354,784:-93.0961,-64.2613,-61.251,-29.1894,0,-22.5667	1/2:300:1,169,127:1:29:169,127:5982,4524:-853.345,-366.446,-317.88,-484.904,0,-448.982	1/2:76:0,49,27:0:0:49,27:1749,964:-221.523,-78.949,-64.1985,-142.931,0,-134.803	1/2:98:0,56,41:0:0:56,41:1972,1452:-278.808,-118.272,-101.414,-160.53,0,-148.188	1/1:16:0,16,0:0:0:16,0:570,0:-51.6329,-4.81648,0,-51.6329,-4.81648,-51.6329	1/2:18:0,13,5:0:0:13,5:460,180:-52.5107,-15.0469,-11.1335,-37.8219,0,-36.3168	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:8:0,6,1:0:0:6,1:216,36:-20.5804,-2.94795,-1.14177,-17.6426,0,-17.3415	1/2:7:0,4,3:0:0:4,3:143,108:-20.8306,-9.17208,-7.96796,-12.0173,0,-11.1142	1/2:218:0,105,112:0:0:105,112:3741,3999:-630.95,-326.024,-294.416,-304.923,0,-271.207	1/2:221:0,108,108:0:0:108,108:3784,3837:-620.555,-312.674,-280.162,-307.892,0,-275.381	1/2:43:0,15,28:0:0:15,28:528,986:-123.587,-80.6233,-76.1079,-43.315,0,-34.8861	1/1:1:0,1,0:0:0:1,0:35,0:-3.49863,-0.30103,0,-3.49863,-0.30103,-3.49863	1/1:174:0,173,1:0:0:173,1:6074,36:-546.339,-52.0782,0,-543.401,-48.7809,-543.1	1/2:32:0,19,12:0:0:19,12:680,423:-89.9756,-34.5165,-28.7969,-55.5356,0,-51.9233	1/2:149:0,67,81:0:0:67,81:2355,2895:-427.784,-236.122,-215.953,-191.735,0,-167.352	1/2:73:0,40,33:0:0:40,33:1417,1171:-211.187,-95.7567,-83.7155,-115.784,0,-105.85	1/2:59:0,22,35:0:0:22,35:758,1191:-158.272,-96.7049,-90.0822,-61.6597,0,-51.1237	1/1:80:0,80,0:0:0:80,0:2853,0:-257.009,-24.0824,0,-257.009,-24.0824,-257.009	1/2:234:0,123,108:0:0:123,108:4367,3828:-667.603,-311.845,-274.818,-355.752,0,-323.24	1/1:308:0,307,0:0:0:307,0:10800,0:-970.291,-92.4162,0,-970.291,-92.4162,-970.291	1/2:173:0,82,89:0:0:82,89:2882,3177:-493.553,-259.006,-234.322,-234.546,0,-207.754	1/2:165:0,81,83:0:0:81,83:2873,2967:-476.024,-241.964,-217.58,-234.103,0,-209.117	1/1:177:0,176,1:0:0:176,1:6225,36:-559.987,-52.9813,0,-557.05,-49.684,-556.749	1/2:12:0,5,7:0:0:5,7:179,252:-35.5183,-20.9217,-19.4166,-14.9552,0,-12.848	1/1:206:0,204,0:0:0:204,0:7231,0:-650.418,-61.4101,0,-650.418,-61.4101,-650.418	1/1:31:0,31,0:0:0:31,0:1096,0:-98.9478,-9.33193,0,-98.9478,-9.33193,-98.9478	1/2:16:0,5,11:0:0:5,11:180,395:-47.2682,-32.5808,-31.0757,-15.0469,0,-11.7356	1/2:255:0,130,122:0:0:130,122:4489,4268:-711.727,-347.069,-307.935,-364.662,0,-327.936	1/2:49:0,34,15:0:0:34,15:1208,540:-142.851,-44.4211,-34.1861,-98.7887,0,-94.2733	1/2:5:0,4,1:0:0:4,1:138,36:-14.4961,-3.29724,-2.09312,-11.5557,0,-11.2547	1/2:17:0,10,7:0:0:10,7:352,252:-49.573,-20.9217,-17.9114,-29.0078,0,-26.9005	1/2:47:0,31,13:0:0:31,13:1080,444:-123.854,-36.0233,-26.6913,-87.8258,0,-83.9124	1/2:90:0,40,50:0:0:40,50:1420,1773:-260.495,-144.8,-132.758,-116.05,0,-100.999	1/1:13:0,13,0:0:0:13,0:467,0:-42.3692,-3.91339,0,-42.3692,-3.91339,-42.3692	1/2:384:0,216,162:0:0:216,162:7592,5805:-1091.41,-473.48,-408.457,-617.976,0,-569.21	1/2:186:0,105,81:0:0:105,81:3719,2853:-535.545,-232.623,-201.015,-303.275,0,-278.892	1/2:45:0,20,25:0:0:20,25:693,900:-130.113,-73.7953,-67.7747,-56.6703,0,-49.1446	1/1:153:0,153,0:0:0:153,0:5416,0:-487.54,-46.0576,0,-487.54,-46.0576,-487.54	1/2:236:0,122,112:0:0:122,112:4334,4016:-680.75,-327.601,-290.875,-353.193,0,-319.478	1/2:83:0,31,51:0:0:31,51:1090,1798:-235.112,-146.387,-137.055,-88.7172,0,-73.3647	1/1:17:0,17,0:0:0:17,0:592,0:-53.596,-5.11751,0,-53.596,-5.11751,-53.596	1/1:77:0,77,0:0:0:77,0:2719,0:-244.947,-23.1793,0,-244.947,-23.1793,-244.947	1/2:78:0,39,38:0:0:39,38:1367,1352:-221.385,-110.153,-98.4129,-111.226,0,-99.7866	1/2:11:0,5,6:0:0:5,6:177,216:-32.3995,-17.9843,-16.4792,-14.7717,0,-12.9655	1/1:65:0,65,0:0:0:65,0:2266,0:-204.196,-19.567,0,-204.196,-19.567,-204.196	1/2:89:0,67,22:0:0:67,22:2362,769:-255.2,-62.9059,-42.7369,-192.644,0,-186.021	1/1:107:0,107,0:0:0:107,0:3774,0:-339.832,-32.2102,0,-339.832,-32.2102,-339.832	1/1:286:0,285,1:0:0:285,1:10138,36:-911.904,-85.7936,0,-908.967,-82.4963,-908.666	1/2:143:0,74,66:0:0:74,66:2610,2360:-404.871,-192.376,-170.1,-212.45,0,-192.582	1/1:138:0,136,2:0:0:136,2:4820,72:-433.478,-40.9401,0,-427.603,-35.0805,-427.001	1/2:29:0,16,13:0:0:16,13:558,468:-83.9143,-38.5463,-33.7298,-45.7228,0,-41.8094	1/1:195:0,195,0:0:0:195,0:6887,0:-619.891,-58.7009,0,-619.891,-58.7009,-619.891	1/2:175:1,74,99:1:25:74,99:2610,3522:-496.958,-285.18,-264.851,-210.226,0,-182.372	1/1:257:0,256,0:0:0:256,0:9032,0:-812.498,-77.0637,0,-812.498,-77.0637,-812.498	1/2:104:0,52,50:0:0:52,50:1838,1800:-296.189,-146.871,-131.218,-149.314,0,-134.263	1/1:60:0,60,0:0:0:60,0:2154,0:-194.059,-18.0618,0,-194.059,-18.0618,-194.059	1/2:90:0,42,48:0:0:42,48:1476,1716:-260.413,-140.276,-127.633,-120.491,0,-106.041	1/1:142:0,141,0:0:0:141,0:4980,0:-447.907,-42.4452,0,-447.907,-42.4452,-447.907	1/2:71:0,30,41:0:0:30,41:1066,1472:-207.29,-120.434,-111.403,-87.2131,0,-74.8709	1/2:73:0,43,30:0:0:43,30:1506,1045:-207.861,-85.3264,-72.3822,-122.883,0,-113.852	1/1:65:0,63,0:0:0:63,0:2233,0:-200.868,-18.9649,0,-200.868,-18.9649,-200.868	1/2:14:0,6,8:0:0:6,8:210,288:-40.9408,-23.8592,-22.053,-17.4357,0,-15.0275	1/2:52:0,28,24:0:0:28,24:990,843:-149.596,-68.9633,-60.5344,-80.9851,0,-73.7604	1/2:61:0,29,32:0:0:29,32:1023,1140:-176.571,-93.2762,-84.5464,-83.6495,0,-74.0165	1/1:213:0,213,0:0:0:213,0:7537,0:-678.263,-64.1194,0,-678.263,-64.1194,-678.263	1/1:80:1,79,0:1:36:79,0:2782,0:-247.001,-20.4841,0,-247.302,-23.7814,-250.239
chr09	16325041	.	AAT	AGT,GGT	216460	PASS	AB=0.509531,0.483578;ABP=8.39122,18.9862;AC=126,62;AF=0.670213,0.329787;AN=188;AO=7167,3305;CIGAR=1M1X1M,2X1M;DP=10529;DPB=10529;DPRA=0,1.10699;EPP=15566,7179.73;EPPR=13.8677;GTI=0;LEN=1,2;MEANALT=2.18085,2.58209;MQM=59.9902,59.9855;MQMR=60;NS=94;NUMALT=2;ODDS=13.3262;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=254153,113918;QR=169;RO=5;RPL=4,19;RPP=15531.2,7015.64;RPPR=13.8677;RPR=7163,3286;RUN=1,1;SAF=4,19;SAP=15531.2,7015.64;SAR=7163,3286;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:16:0,9,7:0:0:9,7:320,243:-46.1723,-20.0898,-17.3805,-26.4331,0,-24.3259	1/1:98:0,98,0:0:0:98,0:3461,0:-311.702,-29.5009,0,-311.702,-29.5009,-311.702	1/1:118:0,118,0:0:0:118,0:4170,0:-375.481,-35.5215,0,-375.481,-35.5215,-375.481	1/1:206:0,205,1:0:0:205,1:7256,36:-652.734,-61.7112,0,-649.796,-58.4139,-649.495	1/2:41:0,14,25:0:0:14,25:504,885:-113.246,-72.1189,-67.9045,-41.1588,0,-33.633	1/2:36:0,16,20:0:0:16,20:561,659:-99.2568,-53.5973,-48.7808,-46.0006,0,-39.98	1/1:163:0,163,0:0:0:163,0:5799,0:-522.025,-49.0679,0,-522.025,-49.0679,-522.025	1/2:134:0,61,72:0:0:61,72:2144,2531:-380.627,-206.115,-187.752,-174.612,0,-152.937	1/2:69:0,46,22:0:0:46,22:1652,753:-195.876,-61.103,-47.2557,-134.761,0,-128.139	1/2:71:0,30,39:0:0:30,39:1071,1349:-196.948,-109.63,-100.599,-87.3345,0,-75.5943	1/2:136:0,65,70:0:0:65,70:2315,2363:-380.189,-191.493,-171.926,-188.683,0,-167.611	1/1:84:1,83,0:1:27:83,0:2959,0:-263.844,-22.5867,0,-264.145,-24.9855,-266.272	1/2:104:1,47,56:1:34:47,56:1680,1966:-293.942,-157.259,-145.868,-134.241,0,-120.141	1/2:148:0,74,74:0:0:74,74:2624,2553:-421.518,-207.743,-185.466,-214.125,0,-191.848	1/2:82:0,36,46:0:0:36,46:1276,1606:-234.935,-130.981,-120.144,-104.306,0,-90.4586	1/2:79:1,41,37:1:36:41,37:1433,1278:-217.158,-100.885,-91.4802,-113.624,0,-105.424	1/2:113:0,55,57:0:0:55,57:1963,1928:-316.423,-156.382,-139.825,-160.136,0,-142.977	1/2:99:0,53,46:0:0:53,46:1872,1598:-282.713,-130.261,-114.307,-152.802,0,-138.954	1/1:65:0,65,0:0:0:65,0:2306,0:-207.801,-19.567,0,-207.801,-19.567,-207.801	1/2:218:0,114,103:0:0:114,103:4066,3452:-611.074,-279.609,-245.292,-331.529,0,-300.523	1/2:112:0,56,55:0:0:56,55:1963,1914:-315.48,-155.746,-138.889,-159.85,0,-143.293	1/2:111:0,33,77:0:0:33,77:1177,2702:-315.834,-219.887,-209.953,-95.9421,0,-72.7628	1/1:62:0,62,0:0:0:62,0:2220,0:-200.064,-18.6639,0,-200.064,-18.6639,-200.064	1/2:107:0,55,52:0:0:55,52:1955,1836:-309.18,-149.866,-133.31,-159.668,0,-144.015	1/1:103:0,103,0:0:0:103,0:3658,0:-329.423,-31.0061,0,-329.423,-31.0061,-329.423	1/2:301:0,141,157:0:0:141,157:4984,5445:-848.511,-442.595,-400.15,-405.932,0,-358.671	1/2:253:0,127,125:0:0:127,125:4483,4249:-709.802,-344.738,-306.508,-365.179,0,-327.55	1/2:52:0,29,23:0:0:29,23:1006,785:-145.813,-64.0401,-55.3103,-82.1167,0,-75.193	1/2:252:1,147,104:1:36:147,104:5167,3600:-709.874,-289.601,-248.287,-417.624,0,-389.255	1/2:112:0,66,44:0:0:66,44:2367,1484:-313.368,-120.293,-100.425,-193.113,0,-179.868	1/2:121:0,73,47:0:0:73,47:2609,1630:-345.364,-132.632,-110.657,-212.88,0,-198.731	1/1:25:0,25,0:0:0:25,0:887,0:-80.1481,-7.52575,0,-80.1481,-7.52575,-80.1481	1/2:24:0,16,8:0:0:16,8:572,283:-70.0461,-23.404,-18.5875,-46.9969,0,-44.5887	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:20:0,8,12:0:0:8,12:268,413:-55.5851,-33.8866,-31.4784,-22.037,0,-18.4246	1/2:18:0,9,8:0:0:9,8:324,255:-47.0557,-20.5945,-17.8852,-26.5356,0,-24.1274	1/2:274:0,148,126:0:0:148,126:5220,4385:-781.942,-356.904,-312.351,-425.389,0,-387.459	1/2:186:0,107,78:0:0:107,78:3809,2691:-529.174,-218.725,-186.515,-310.566,0,-287.086	1/2:138:0,68,69:0:0:68,69:2428,2384:-391.663,-193.708,-173.238,-197.966,0,-177.195	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:299:0,298,1:0:0:298,1:10527,36:-946.986,-89.7069,0,-944.048,-86.4097,-943.747	1/2:74:0,42,32:0:0:42,32:1500,1116:-213.412,-91.1127,-78.4694,-122.651,0,-113.018	1/2:145:0,65,80:0:0:65,80:2332,2753:-414.154,-223.933,-204.366,-190.573,0,-166.49	1/2:132:0,64,65:0:0:64,65:2260,2256:-367.495,-183.448,-164.182,-184.106,0,-164.539	1/2:88:0,53,33:0:0:53,33:1883,1109:-243.265,-89.816,-73.8614,-153.434,0,-143.5	1/1:97:0,97,0:0:0:97,0:3451,0:-310.802,-29.1999,0,-310.802,-29.1999,-310.802	1/2:137:0,67,70:0:0:67,70:2390,2425:-392.267,-197.431,-177.262,-195.187,0,-174.115	1/1:167:0,166,0:0:0:166,0:5840,0:-525.355,-49.971,0,-525.355,-49.971,-525.355	1/2:135:0,85,49:0:0:85,49:3039,1737:-389.409,-141.611,-116.023,-247.901,0,-233.15	1/2:146:0,85,60:0:0:85,60:3013,2083:-414.78,-169.316,-143.729,-245.454,0,-227.392	1/1:161:0,161,0:0:0:161,0:5714,0:-514.38,-48.4658,0,-514.38,-48.4658,-514.38	1/2:29:0,17,12:0:0:17,12:598,403:-81.6665,-32.9796,-27.8621,-49.0292,0,-45.4168	1/1:186:0,185,0:0:0:185,0:6545,0:-588.776,-55.6906,0,-588.776,-55.6906,-588.776	1/1:66:0,66,0:0:0:66,0:2356,0:-212.299,-19.868,0,-212.299,-19.868,-212.299	1/2:43:0,26,17:0:0:26,17:928,578:-122.887,-47.2216,-39.3949,-76.0115,0,-70.894	1/2:95:0,48,47:0:0:48,47:1680,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chr09	16647022	.	G	A	85093.2	PASS	AB=0.465685;ABP=46.0793;AC=126;AF=0.670213;AN=188;AO=4290;CIGAR=1X;DP=6553;DPB=6553;DPRA=0;EPP=9318.63;EPPR=4908.37;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9879;MQMR=59.988;NS=94;NUMALT=1;ODDS=3.30411;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152668;QR=80646;RO=2259;RPL=0;RPP=9318.63;RPPR=4908.37;RPR=4290;RUN=1;SAF=4290;SAP=9318.63;SAR=0;SRF=2259;SRP=4908.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:35,33:35:1252:33:1184:-86.3983,0,-92.515	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:124:0,124:0:0:124:4382:-394.552,-37.3277,0	1/1:141:0,139:0:0:139:4973:-447.357,-41.8432,0	0/1:54:35,19:35:1248:19:684:-45.6347,0,-96.3692	0/1:68:29,38:29:1040:38:1368:-102.931,0,-73.4241	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:140:72,68:72:2561:68:2420:-175.91,0,-188.595	0/1:130:61,69:61:2172:69:2436:-180.358,0,-156.613	0/1:66:37,29:37:1308:29:1021:-72.3323,0,-98.1535	0/1:74:39,35:39:1384:35:1241:-89.7171,0,-102.583	1/1:100:0,100:0:0:100:3589:-323.215,-30.103,0	0/1:72:42,30:42:1491:30:1072:-75.1183,0,-112.81	0/1:53:27,26:27:959:26:932:-68.2443,0,-70.6708	0/1:62:38,24:38:1368:24:815:-54.9938,0,-104.757	0/1:58:30,28:30:1080:28:1004:-73.2161,0,-80.0535	0/1:28:13,15:13:468:15:532:-39.7837,0,-34.0308	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	1/1:51:0,51:0:0:51:1809:-163.089,-15.3525,0	0/1:51:23,28:23:828:28:995:-74.5115,0,-59.4916	0/1:144:81,63:81:2901:63:2255:-159.863,0,-217.975	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	1/1:77:1,76:1:36:76:2720:-241.445,-19.581,0	0/1:67:39,28:39:1392:28:1004:-70.5069,0,-105.41	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:169:86,83:86:3072:83:2944:-214.319,0,-225.835	0/1:123:70,53:70:2504:53:1900:-134.251,0,-188.586	0/1:39:26,13:26:936:13:468:-30.7195,0,-72.8193	0/1:87:45,42:45:1608:42:1493:-108.473,0,-118.82	0/1:108:53,55:53:1896:55:1953:-143.533,0,-138.407	0/1:83:37,46:37:1328:46:1640:-122.903,0,-94.8367	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:27:12,15:12:432:15:536:-40.447,0,-31.0934	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	0/1:19:12,7:12:432:7:248:-16.9446,0,-33.5016	0/1:145:72,73:72:2575:73:2556:-186.637,0,-188.35	0/1:59:34,25:34:1209:25:885:-62.2058,0,-91.3534	0/1:61:28,33:28:1008:33:1164:-86.703,0,-72.6735	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	1/1:72:1,71:1:36:71:2522:-223.631,-18.0759,0	0/1:52:24,28:24:856:28:989:-73.6685,0,-61.7075	0/1:148:98,50:98:3486:50:1766:-114.667,0,-269.397	0/1:51:26,25:26:928:25:896:-65.6078,0,-68.4857	0/1:54:29,25:29:1040:25:892:-64.3441,0,-77.6587	1/1:85:1,84:1:36:84:3004:-266.993,-21.9893,0	0/1:103:55,48:55:1976:48:1705:-122.729,0,-147.109	1/1:96:3,93:3:108:93:3279:-285.253,-18.8237,0	0/1:45:29,16:29:1040:16:572:-38.2671,0,-80.368	0/1:79:33,46:33:1184:46:1643:-124.376,0,-83.042	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:86:0,86:0:0:86:3055:-275.179,-25.8886,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	0/1:12:8,4:8:269:4:144:-9.70126,0,-20.9238	0/1:147:71,76:71:2514:76:2716:-200.431,0,-182.258	0/1:36:16,20:16:576:20:716:-53.9306,0,-41.3379	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:82:45,37:45:1620:37:1328:-95.1378,0,-121.383	0/1:89:47,42:47:1677:42:1504:-108.863,0,-124.424	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	0/1:63:44,19:44:1561:19:680:-42.5643,0,-121.815	0/1:152:75,77:75:2665:77:2734:-200.544,0,-194.338	0/1:69:35,34:35:1260:34:1220:-89.3357,0,-92.9344	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0	0/1:83:38,45:38:1360:45:1620:-121.104,0,-97.7151	0/1:106:71,35:71:2540:35:1245:-80.4435,0,-196.942	1/1:61:1,60:1:36:60:2156:-190.708,-14.7646,0	1/1:73:0,73:0:0:73:2608:-234.968,-21.9752,0	0/1:36:19,17:19:684:17:612:-44.5764,0,-51.0532	0/1:26:20,6:20:716:6:204:-10.8652,0,-56.9409	1/1:61:0,60:0:0:60:2122:-191.033,-18.0618,0	0/1:85:44,41:44:1565:41:1472:-107.189,0,-115.552	1/1:146:0,146:0:0:146:5177:-466.056,-43.9504,0	1/1:97:0,97:0:0:97:3431:-308.915,-29.1999,0	0/1:89:43,46:43:1514:46:1607:-118.122,0,-109.757	1/1:101:0,101:0:0:101:3609:-325.015,-30.404,0	0/1:15:9,6:9:316:6:216:-15.2751,0,-24.2634	1/1:90:1,89:1:36:89:3169:-281.835,-23.4944,0	0/1:40:19,21:19:676:21:707:-51.8982,0,-49.1268	1/1:122:0,122:0:0:122:4353:-391.944,-36.7257,0	0/1:56:26,30:26:906:30:1056:-78.4904,0,-64.9933	1/1:57:0,57:0:0:57:2035:-183.422,-17.1587,0	0/1:35:14,21:14:500:21:737:-56.1146,0,-34.8001	1/1:110:2,108:2:72:108:3797:-335.088,-26.2766,0	0/1:25:14,11:14:500:11:387:-27.6402,0,-37.8104	0/1:64:37,27:37:1313:27:964:-67.8109,0,-99.2038	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:48:29,19:29:1029:19:684:-47.4409,0,-78.4717	0/1:109:58,51:58:2075:51:1832:-132.349,0,-154.208	0/1:66:46,20:46:1652:20:682:-41.8261,0,-129.1	1/1:112:0,112:0:0:112:4032:-363.066,-33.7154,0	1/1:102:0,102:0:0:102:3637:-327.534,-30.7051,0
chr09	16647073	.	A	G	275589	PASS	AB=0.490514;ABP=10.8793;AC=126;AF=0.670213;AN=188;AO=10739;CIGAR=1X;DP=15887;DPB=15887;DPRA=0;EPP=23305.1;EPPR=11166.6;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9868;MQMR=59.994;NS=94;NUMALT=1;ODDS=13.217;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=380034;QR=183924;RO=5145;RPL=4114;RPP=1277.93;RPPR=177.508;RPR=6625;RUN=1;SAF=4112;SAP=1282;SAR=6627;SRF=2250;SRP=178.596;SRR=2895;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:88:43,45:43:1510:45:1567:-114.827,0,-109.701	1/1:226:0,226:0:0:226:7981:-718.316,-68.0328,0	1/1:226:0,226:0:0:226:8021:-721.915,-68.0328,0	1/1:400:0,400:0:0:400:14203:-1278.04,-120.412,0	0/1:161:91,70:91:3260:70:2492:-176.068,0,-245.155	0/1:126:54,72:54:1940:72:2536:-190.561,0,-136.946	1/1:180:3,177:3:104:177:6252:-553.076,-44.4826,0	0/1:336:171,164:171:6111:164:5762:-417.574,0,-448.966	0/1:241:109,132:109:3893:132:4677:-348.544,0,-278.015	0/1:215:89,126:89:3196:126:4480:-338.649,0,-223.141	0/1:153:84,69:84:2985:69:2454:-175.056,0,-222.824	1/1:161:0,161:0:0:161:5602:-504.312,-48.4658,0	0/1:138:80,58:80:2859:58:2028:-141.248,0,-216.005	0/1:134:64,70:64:2291:70:2467:-181.944,0,-166.113	0/1:139:78,61:78:2776:61:2137:-150.752,0,-208.236	0/1:122:58,64:58:2070:64:2259:-166.845,0,-149.844	0/1:113:52,61:52:1849:61:2121:-157.136,0,-132.672	0/1:80:45,35:45:1607:35:1223:-86.2877,0,-120.837	1/1:98:0,98:0:0:98:3490:-314.31,-29.5009,0	0/1:188:90,98:90:3216:98:3473:-256.187,0,-233.069	0/1:310:168,142:168:5997:142:4993:-356.203,0,-446.517	0/1:78:54,24:54:1940:24:839:-52.3469,0,-151.396	1/1:211:1,210:1:36:210:7445:-666.5,-59.9191,0	0/1:211:90,121:90:3212:121:4307:-324.291,0,-225.783	1/1:108:0,108:0:0:108:3824:-344.357,-32.5112,0	0/1:458:227,231:227:8116:231:8209:-600.955,0,-592.584	0/1:327:155,172:155:5551:172:6139:-454.172,0,-401.277	0/1:78:45,33:45:1584:33:1141:-79.5103,0,-119.367	0/1:280:122,158:122:4372:158:5639:-423.341,0,-309.365	0/1:254:105,149:105:3759:149:5240:-395.281,0,-262.047	0/1:228:119,109:119:4264:109:3808:-274.283,0,-315.303	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:30:16,14:16:576:14:496:-35.9434,0,-43.1441	1/1:10:0,10:0:0:10:347:-31.5636,-3.0103,0	0/1:25:7,18:7:252:18:640:-50.4036,0,-15.5032	0/1:27:17,10:17:608:10:339:-22.7097,0,-46.9242	0/1:339:166,173:166:5964:173:6158:-452.271,0,-434.815	0/1:202:96,106:96:3440:106:3744:-276.353,0,-249.005	0/1:126:71,55:71:2510:55:1917:-134.873,0,-188.223	1/1:12:0,12:0:0:12:419:-38.0427,-3.61236,0	1/1:231:1,230:1:36:230:8123:-727.493,-65.9397,0	0/1:80:40,40:40:1417:40:1416:-103.655,0,-103.743	0/1:269:169,100:169:6035:100:3537:-237.561,0,-462.278	0/1:141:66,75:66:2372:75:2666:-197.74,0,-171.292	0/1:128:73,55:73:2620:55:1917:-134.271,0,-197.515	1/1:175:1,174:1:36:174:6173:-552.073,-49.082,0	0/1:228:114,114:114:4079:114:4063:-297.223,0,-298.661	1/1:250:5,245:5:176:245:8625:-760.075,-59.0725,0	0/1:122:64,58:64:2288:58:2076:-150.385,0,-169.456	0/1:220:106,114:106:3796:114:4064:-299.721,0,-275.593	1/1:143:0,143:0:0:143:5077:-457.077,-43.0473,0	0/1:16:12,4:12:428:4:140:-8.1281,0,-34.0423	1/1:215:0,215:0:0:215:7642:-687.821,-64.7215,0	1/1:156:0,156:0:0:156:5584:-502.682,-46.9607,0	0/1:20:10,10:10:356:10:351:-25.9061,0,-26.3606	0/1:256:141,115:141:5034:115:4030:-285.825,0,-376.143	0/1:113:53,60:53:1885:60:2118:-156.872,0,-135.91	0/1:28:12,16:12:432:16:572:-43.3846,0,-30.7359	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:177:83,93:83:2976:93:3309:-244.845,0,-214.889	0/1:210:114,96:114:4068:96:3361:-239.49,0,-303.089	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:249:109,140:109:3904:140:4952:-370.874,0,-276.597	0/1:335:172,163:172:6147:163:5792:-420.55,0,-452.485	0/1:143:70,73:70:2503:73:2594:-190.661,0,-182.475	1/1:138:0,138:0:0:138:4891:-440.344,-41.5421,0	0/1:257:122,135:122:4367:135:4793:-354.164,0,-315.839	0/1:184:126,58:126:4523:58:2058:-130.101,0,-351.846	1/1:91:1,90:1:36:90:3081:-273.831,-23.7955,0	1/1:169:0,169:0:0:169:5997:-539.84,-50.8741,0	0/1:130:71,59:71:2505:59:2050:-145.632,0,-186.566	0/1:35:25,10:25:896:10:356:-21.8452,0,-70.4243	1/1:140:0,140:0:0:140:4937:-444.484,-42.1442,0	0/1:152:74,78:74:2622:78:2782:-204.863,0,-190.469	1/1:398:0,398:0:0:398:14091:-1267.93,-119.81,0	1/1:282:1,281:1:36:281:9977:-894.268,-81.2922,0	0/1:220:106,114:106:3777:114:4051:-298.55,0,-273.902	1/1:251:0,251:0:0:251:8931:-803.778,-75.5585,0	0/1:35:26,9:26:936:9:320:-18.6063,0,-74.0234	1/1:225:1,224:1:36:224:7976:-714.266,-64.1335,0	0/1:152:71,81:71:2556:81:2892:-214.76,0,-184.533	1/1:364:0,363:0:0:363:12910:-1161.36,-109.274,0	0/1:177:95,82:95:3404:82:2899:-207.864,0,-253.292	1/1:120:0,120:0:0:120:4252:-382.86,-36.1236,0	0/1:139:62,77:62:2228:77:2716:-202.84,0,-158.941	1/1:241:4,237:4:135:237:8356:-739.571,-60.0657,0	0/1:71:40,31:40:1436:31:1077:-75.8631,0,-108.165	0/1:144:80,64:80:2872:64:2256:-159.953,0,-215.368	1/1:165:0,165:0:0:165:5814:-523.378,-49.67,0	0/1:81:41,40:41:1472:40:1415:-103.263,0,-108.393	0/1:191:106,85:106:3787:85:3009:-213.545,0,-283.532	0/1:136:96,40:96:3432:40:1389:-84.3621,0,-268.154	1/1:219:0,219:0:0:219:7765:-698.887,-65.9256,0	1/1:172:0,172:0:0:172:6074:-546.768,-51.7772,0
chr09	16828751	.	AGAAA	GGAAG,GGAAA	113663	PASS	AB=0.615267,0.378909;ABP=379.459,418.466;AC=127,59;AF=0.682796,0.317204;AN=186;AO=4204,1247;CIGAR=1X3M1X,1X4M;DP=5479;DPB=5480;DPRA=5.94457,0.875402;EPP=9131.88,2710.84;EPPR=0;GTI=4;LEN=5,1;MEANALT=1.91304,2.27119;MQM=59.7493,59.9864;MQMR=0;NS=93;NUMALT=2;ODDS=1.1745;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=75,75;PQR=0;PRO=0;QA=148363,44556;QR=0;RO=0;RPL=4204,1247;RPP=9131.88,2710.84;RPPR=0;RPR=0,0;RUN=1,1;SAF=4204,1247;SAP=9131.88,2710.84;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:73:0,46,27:0:0:46,27:1610,953:-208.942,-77.9555,-64.1081,-131.338,0,-123.21	1/1:56:0,55,0:0:0:55,0:1941,0:-174.74,-16.5567,0,-174.74,-16.5567,-174.74	1/1:114:0,114,0:0:0:114,0:4025,0:-362.392,-34.3174,0,-362.392,-34.3174,-362.392	1/1:89:0,89,0:0:0:89,0:3170,0:-285.511,-26.7917,0,-285.511,-26.7917,-285.511	1/2:24:0,9,15:0:0:9,15:324,540:-70.8578,-44.4211,-41.7118,-26.7966,0,-22.2811	1/2:29:0,22,7:0:0:22,7:776,252:-84.1019,-20.9217,-14.2991,-63.5383,0,-61.4311	1/1:90:0,90,0:0:0:90,0:3196,0:-287.862,-27.0927,0,-287.862,-27.0927,-287.862	1/2:89:0,52,37:0:0:52,37:1834,1332:-258.263,-109.044,-93.3907,-149.576,0,-138.438	1/2:53:0,39,14:0:0:39,14:1380,489:-152.527,-40.1245,-28.3843,-112.753,0,-108.539	1/2:50:0,36,14:0:0:36,14:1244,504:-142.457,-41.4837,-30.6466,-101.329,0,-97.1145	1/2:48:0,31,17:0:0:31,17:1091,608:-138.744,-49.9345,-40.6026,-89.165,0,-84.0475	1/1:51:0,50,0:0:0:50,0:1749,0:-157.466,-15.0515,0,-157.466,-15.0515,-157.466	1/2:53:0,25,28:0:0:25,28:864,1004:-152.443,-82.247,-74.7213,-70.5475,0,-62.1186	1/2:38:0,22,16:0:0:22,16:761,576:-109.189,-47.3585,-40.7358,-62.1842,0,-57.3677	1/2:30:0,14,16:0:0:14,16:495,567:-86.8581,-46.5442,-42.3298,-40.6676,0,-35.8512	1/2:43:0,22,21:0:0:22,21:789,737:-124.685,-60.329,-53.7063,-64.711,0,-58.3894	1/2:24:0,13,11:0:0:13,11:466,392:-70.3159,-32.3087,-28.3953,-38.3644,0,-35.053	1/2:16:0,9,7:0:0:9,7:324,248:-46.9969,-20.557,-17.8477,-26.7966,0,-24.6894	1/1:32:0,31,1:0:0:31,1:1085,36:-97.5964,-9.33193,0,-94.6587,-6.03469,-94.3576	1/2:88:0,50,38:0:0:50,38:1762,1368:-255.433,-111.982,-96.9302,-143.808,0,-132.369	1/2:80:0,44,35:0:0:44,35:1557,1226:-226.64,-99.8171,-86.5718,-126.892,0,-116.356	1/2:81:0,47,32:0:0:47,32:1650,1148:-227.907,-93.6371,-79.4887,-134.266,0,-124.633	1/1:80:0,80,0:0:0:80,0:2839,0:-255.746,-24.0824,0,-255.746,-24.0824,-255.746	1/2:98:0,65,32:0:0:65,32:2323,1137:-282.161,-92.7802,-73.2133,-189.512,0,-179.879	1/1:71:0,71,0:0:0:71,0:2498,0:-225.066,-21.3731,0,-225.066,-21.3731,-225.066	1/2:157:0,96,59:0:0:96,59:3369,2109:-446.161,-172,-143.101,-274.199,0,-256.438	1/2:154:0,93,60:0:0:93,60:3256,2141:-439.522,-174.642,-146.647,-264.981,0,-246.919	1/2:17:0,6,11:0:0:6,11:207,392:-49.1215,-32.3087,-30.5025,-17.1616,0,-13.8503	1/2:120:0,89,31:0:0:89,31:3118,1116:-345.114,-91.4198,-64.6281,-254.051,0,-244.719	1/2:84:0,63,21:0:0:63,21:2217,752:-242.037,-61.5732,-42.6083,-180.709,0,-174.387	1/2:64:0,34,28:0:0:34,28:1190,1000:-178.309,-81.4989,-71.2639,-96.7774,0,-88.3486	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:5:0,4,1:0:0:4,1:143,32:-14.5882,-2.89828,-1.69416,-12.0173,0,-11.7163	1/2:8:0,6,2:0:0:6,2:216,72:-23.8582,-6.23466,-4.42848,-17.9834,0,-17.3813	1/2:98:0,58,36:0:0:58,36:2063,1284:-272.784,-104.671,-87.2113,-168.114,0,-157.276	1/2:93:0,49,44:0:0:49,44:1729,1568:-268.926,-128.166,-113.416,-141.114,0,-127.869	1/2:34:0,23,11:0:0:23,11:826,396:-100.051,-32.6714,-25.7477,-67.7393,0,-64.428	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:100:0,100,0:0:0:100,0:3539,0:-318.72,-30.103,0,-318.72,-30.103,-318.72	1/2:19:0,11,8:0:0:11,8:374,288:-54.1814,-23.8592,-20.5478,-30.6737,0,-28.2654	1/2:89:0,53,35:0:0:53,35:1869,1232:-252.463,-100.286,-84.3312,-152.17,0,-141.634	1/2:26:0,19,7:0:0:19,7:668,252:-75.287,-20.9217,-15.2022,-54.7228,0,-52.6156	1/2:38:0,23,15:0:0:23,15:813,525:-109.279,-43.0626,-36.1389,-66.5678,0,-62.0523	1/1:106:0,106,0:0:0:106,0:3754,0:-338.06,-31.9092,0,-338.06,-31.9092,-338.06	1/2:75:0,55,20:0:0:55,20:1932,716:-215.988,-58.7471,-42.1905,-157.597,0,-151.577	1/1:89:0,89,0:0:0:89,0:3138,0:-282.639,-26.7917,0,-282.639,-26.7917,-282.639	1/2:57:0,37,19:0:0:37,19:1313,684:-162.768,-55.8112,-44.6731,-106.955,0,-101.236	1/2:43:0,21,22:0:0:21,22:746,792:-125.769,-64.983,-58.6614,-61.1431,0,-54.5204	1/1:93:0,93,0:0:0:93,0:3255,0:-293.17,-27.9958,0,-293.17,-27.9958,-293.17	1/1:7:0,7,0:0:0:7,0:250,0:-22.8419,-2.10721,0,-22.8419,-2.10721,-22.8419	1/1:126:0,126,0:0:0:126,0:4481,0:-403.454,-37.9298,0,-403.454,-37.9298,-403.454	1/1:39:0,39,0:0:0:39,0:1362,0:-122.874,-11.7402,0,-122.874,-11.7402,-122.874	1/1:3:0,3,0:0:0:3,0:107,0:-9.98217,-0.90309,0,-9.98217,-0.90309,-9.98217	1/2:62:0,40,22:0:0:40,22:1412,788:-179.598,-64.6221,-52.5809,-115.332,0,-108.709	1/2:35:0,15,20:0:0:15,20:519,720:-101.107,-59.1082,-54.5927,-42.3496,0,-36.32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chr09	16828772	.	A	T	83451.6	PASS	AB=0.615191;ABP=370.209;AC=127;AF=0.682796;AN=186;AO=4070;CIGAR=1X;DP=5309;DPB=5309;DPRA=5.75978;EPP=8840.9;EPPR=2691.29;GTI=4;LEN=1;MEANALT=1.01087;MQM=59.7354;MQMR=59.9443;NS=93;NUMALT=1;ODDS=1.05609;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145163;QR=43876;RO=1238;RPL=4069;RPP=8832.22;RPPR=2691.29;RPR=1;RUN=1;SAF=4069;SAP=8832.22;SAR=1;SRF=1238;SRP=2691.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:27,45:27:924:45:1616:-124.053,0,-61.7917	1/1:54:0,54:0:0:54:1925:-173.522,-16.2556,0	1/1:110:0,110:0:0:110:3917:-352.688,-33.1133,0	1/1:88:0,88:0:0:88:3136:-282.417,-26.4906,0	0/1:24:15,9:15:522:9:324:-22.2811,0,-40.0826	0/1:29:7,22:7:239:22:792:-62.8749,0,-13.1128	1/1:85:0,85:0:0:85:3048:-274.547,-25.5876,0	0/1:89:37,52:37:1312:52:1843:-139.107,0,-91.59	0/1:49:13,36:13:464:36:1269:-99.7603,0,-27.347	0/1:44:12,32:12:428:32:1148:-90.3622,0,-25.6135	0/1:48:17,31:17:603:31:1116:-86.2999,0,-40.1501	1/1:48:0,48:0:0:48:1715:-154.629,-14.4494,0	0/1:53:28,25:28:1000:25:896:-65.0058,0,-74.3608	0/1:38:16,22:16:572:22:788:-59.8041,0,-40.3743	0/1:30:16,14:16:568:14:491:-35.4887,0,-42.421	0/1:41:20,21:20:711:21:756:-56.0234,0,-51.9734	0/1:23:11,12:11:381:12:432:-32.2966,0,-27.6969	0/1:15:6,8:6:216:8:288:-21.6932,0,-15.2163	1/1:32:1,31:1:36:31:1112:-96.7913,-6.03469,0	0/1:85:37,48:37:1324:48:1715:-129.043,0,-93.8745	0/1:78:34,44:34:1212:44:1576:-118.648,0,-85.9014	0/1:80:34,46:34:1207:46:1626:-122.535,0,-84.8529	1/1:80:0,80:0:0:80:2855:-257.184,-24.0824,0	0/1:96:31,65:31:1096:65:2336:-181.57,0,-70.0511	1/1:70:0,70:0:0:70:2507:-225.874,-21.0721,0	0/1:155:59,96:59:2091:96:3412:-260.555,0,-141.8	0/1:152:59,93:59:2103:93:3290:-250.526,0,-143.774	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5027	0/1:119:31,88:31:1103:88:3139:-246.908,0,-63.7572	0/1:84:22,62:22:771:62:2200:-172.972,0,-44.4238	0/1:63:29,34:29:1025:34:1224:-91.4975,0,-73.5958	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:8:2,6:2:72:6:197:-15.6422,0,-4.42848	0/1:98:36,62:36:1267:62:2198:-168.439,0,-83.5534	0/1:93:44,49:44:1567:49:1723:-127.327,0,-113.325	0/1:34:11,23:11:396:23:824:-64.2474,0,-25.7477	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:99:0,99:0:0:99:3528:-317.725,-29.802,0	0/1:19:8,11:8:288:11:387:-29.4448,0,-20.5478	0/1:83:33,50:33:1180:50:1792:-136.569,0,-81.5226	0/1:26:7,19:7:252:19:671:-52.8857,0,-15.2022	0/1:36:15,21:15:518:21:752:-57.1692,0,-36.1085	1/1:105:0,105:0:0:105:3737:-336.527,-31.6082,0	0/1:72:20,52:20:704:52:1834:-143.663,0,-42.0104	1/1:88:0,88:0:0:88:3129:-281.706,-26.4906,0	0/1:56:19,37:19:680:37:1320:-102.223,0,-44.6715	0/1:40:20,20:20:695:20:697:-51.0103,0,-50.8302	1/1:91:1,90:1:21:90:3198:-285.935,-25.2938,0	1/1:7:0,7:0:0:7:244:-22.2961,-2.10721,0	1/1:123:0,123:0:0:123:4420:-397.961,-37.0267,0	1/1:38:0,38:0:0:38:1356:-122.338,-11.4391,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:60:22,38:22:784:38:1360:-104.636,0,-52.8221	0/1:30:20,10:20:698:10:360:-23.7088,0,-54.1105	.:.:.:.:.:.:.:.	0/1:9:1,8:1:32:8:288:-23.5581,0,-0.490043	0/1:67:22,45:22:779:45:1616:-125.559,0,-50.2631	0/1:109:39,70:39:1387:70:2503:-192.697,0,-92.3159	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:73:31,42:31:1112:42:1504:-113.679,0,-78.4162	0/1:86:40,46:40:1427:46:1648:-122.711,0,-102.838	0/1:59:20,39:20:707:39:1400:-108.538,0,-46.1938	1/1:29:0,29:0:0:29:1017:-91.8388,-8.72987,0	0/1:71:16,55:16:572:55:1972:-156.375,0,-30.4403	0/1:71:34,37:34:1197:37:1332:-98.7183,0,-86.6579	1/1:25:0,25:0:0:25:884:-79.1727,-7.52575,0	1/1:54:0,54:0:0:54:1928:-173.796,-16.2556,0	0/1:48:24,24:24:860:24:856:-62.4191,0,-63.2724	0/1:23:5,18:5:176:18:635:-50.5533,0,-9.26133	1/1:111:0,111:0:0:111:3962:-356.721,-33.4143,0	0/1:46:19,27:19:671:27:959:-72.1483,0,-46.8684	1/1:134:0,134:0:0:134:4774:-429.792,-40.338,0	1/1:92:0,92:0:0:92:3300:-297.127,-27.6948,0	0/1:45:11,34:11:392:34:1211:-95.7468,0,-22.0737	1/1:46:0,46:0:0:46:1648:-148.606,-13.8474,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	1/1:41:0,41:0:0:41:1464:-132.045,-12.3422,0	0/1:29:10,19:10:360:19:667:-51.6176,0,-24.0144	1/1:147:0,147:0:0:147:5245:-472.096,-44.2514,0	0/1:61:30,31:30:1059:31:1107:-81.5703,0,-77.2576	1/1:46:1,45:1:36:45:1598:-140.51,-10.2491,0	0/1:29:9,20:9:316:20:720:-56.3966,0,-20.049	1/1:103:0,103:0:0:103:3661:-329.671,-31.0061,0	0/1:27:10,17:10:360:17:608:-46.9242,0,-24.6165	0/1:46:11,35:11:384:35:1260:-99.8581,0,-21.0356	1/1:51:0,51:0:0:51:1814:-163.538,-15.3525,0	0/1:20:8,12:8:284:12:428:-32.8349,0,-19.8828	0/1:86:35,51:35:1256:51:1827:-138.807,0,-87.4567	0/1:39:21,18:21:731:18:640:-46.1882,0,-54.3703	1/1:32:0,32:0:0:32:1148:-103.626,-9.63296,0	1/1:58:0,58:0:0:58:2072:-186.74,-17.4597,0
chr09	16978996	.	T	C	90187.9	PASS	AB=0.446171;ABP=113.118;AC=130;AF=0.691489;AN=188;AO=4546;CIGAR=1X;DP=6979;DPB=6979;DPRA=0;EPP=9874.52;EPPR=5281.86;GTI=3;LEN=1;MEANALT=1.02128;MQM=59.5081;MQMR=59.8984;NS=94;NUMALT=1;ODDS=0.284555;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161526;QR=86816;RO=2431;RPL=4546;RPP=9874.52;RPPR=5281.86;RPR=0;RUN=1;SAF=4546;SAP=9874.52;SAR=0;SRF=2431;SRP=5281.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:32,24:32:1128:24:845:-59.498,0,-84.9706	1/1:55:0,55:0:0:55:1972:-177.554,-16.5567,0	1/1:103:0,103:0:0:103:3685:-331.815,-31.0061,0	1/1:241:0,241:0:0:241:8548:-768.625,-72.5482,0	0/1:50:30,20:30:1067:20:720:-50.0773,0,-81.2897	0/1:40:31,9:31:1095:9:320:-17.065,0,-86.8179	1/1:76:1,75:1:36:75:2652:-235.325,-19.28,0	0/1:80:53,27:53:1891:27:964:-62.9862,0,-146.385	0/1:51:36,15:36:1278:15:531:-32.7664,0,-99.9515	0/1:55:29,26:29:1040:26:898:-64.1918,0,-77.3531	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	1/1:88:0,88:0:0:88:3103:-279.107,-26.4906,0	0/1:87:48,39:48:1720:39:1393:-99.4416,0,-128.896	0/1:34:23,11:23:824:11:392:-25.3768,0,-64.2437	0/1:72:30,42:30:1076:42:1498:-113.35,0,-75.3915	0/1:62:32,30:32:1144:30:1061:-77.1263,0,-84.6057	0/1:26:15,11:15:540:11:396:-28.1477,0,-41.1098	0/1:38:19,19:19:680:19:667:-48.7229,0,-50.09	1/1:20:0,20:0:0:20:716:-64.7478,-6.0206,0	0/1:153:77,76:77:2727:76:2693:-196.487,0,-199.611	0/1:108:65,43:65:2324:43:1513:-103.449,0,-176.909	0/1:116:74,42:74:2647:42:1504:-100.735,0,-203.552	1/1:107:0,107:0:0:107:3797:-341.076,-32.2102,0	0/1:62:30,32:30:1076:32:1152:-85.3247,0,-78.489	1/1:37:0,37:0:0:37:1323:-119.371,-11.1381,0	0/1:203:128,75:128:4569:75:2653:-177.901,0,-350.255	0/1:110:53,57:53:1895:57:2000:-147.154,0,-137.714	0/1:29:15,14:15:540:14:496:-36.2296,0,-40.2067	0/1:200:112,88:112:4012:88:3141:-222.707,0,-301.063	0/1:130:65,65:65:2327:65:2336:-171.325,0,-170.554	0/1:106:54,52:54:1923:52:1859:-135.66,0,-141.437	1/1:6:0,6:0:0:6:212:-19.395,-1.80618,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:4,5:4:144:5:180:-13.8335,0,-10.6043	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:232:117,115:117:4186:115:4093:-298.715,0,-306.587	0/1:117:56,61:56:2004:61:2153:-158.778,0,-145.283	0/1:48:19,29:19:684:29:1040:-79.4649,0,-47.4409	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:108:0,108:0:0:108:3821:-343.972,-32.5112,0	0/1:17:10,7:10:360:7:239:-16.7205,0,-27.6268	0/1:78:44,34:44:1584:34:1205:-85.2551,0,-119.237	0/1:65:37,28:37:1328:28:986:-69.3525,0,-100.255	0/1:53:24,29:24:848:29:1036:-77.597,0,-60.6851	1/1:80:0,80:0:0:80:2834:-255.233,-24.0824,0	0/1:66:28,38:28:1004:38:1341:-101.098,0,-70.8079	1/1:152:0,152:0:0:152:5393:-485.483,-45.7566,0	1/1:40:1,39:1:36:39:1396:-121.563,-8.44293,0	0/1:102:59,43:59:2120:43:1492:-103.861,0,-160.361	1/1:103:0,103:0:0:103:3691:-332.29,-31.0061,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:68:0,68:0:0:68:2405:-216.455,-20.47,0	1/1:60:0,60:0:0:60:2117:-190.425,-18.0618,0	0/1:10:7,3:7:243:3:108:-7.05643,0,-19.1972	0/1:91:55,36:55:1972:36:1287:-88.7321,0,-150.353	0/1:26:12,14:12:420:14:500:-37.5094,0,-30.3072	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	0/1:55:37,18:37:1293:18:644:-41.7214,0,-100.11	0/1:78:39,39:39:1382:39:1395:-102.366,0,-101.197	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:215:125,90:125:4467:90:3169:-220.707,0,-337.478	0/1:162:99,62:99:3531:62:2164:-146.185,0,-269.169	0/1:33:14,19:14:495:19:671:-50.7772,0,-34.949	1/1:68:0,68:0:0:68:2414:-217.512,-20.47,0	0/1:173:96,77:96:3428:77:2744:-195.098,0,-256.569	0/1:91:70,21:70:2497:21:756:-40.9735,0,-197.583	1/1:18:0,18:0:0:18:631:-57.1088,-5.41854,0	1/1:39:0,39:0:0:39:1389:-125.109,-11.7402,0	0/1:38:25,13:25:887:13:468:-31.0205,0,-68.709	0/1:24:14,10:14:504:10:356:-25.1565,0,-38.4734	1/1:68:0,67:0:0:67:2400:-215.551,-20.169,0	0/1:62:27,35:27:968:35:1252:-94.3064,0,-68.7735	1/1:109:0,109:0:0:109:3880:-349.063,-32.8123,0	1/1:136:0,136:0:0:136:4865:-437.857,-40.9401,0	0/1:84:42,42:42:1500:42:1494:-109.268,0,-110.008	1/1:94:0,94:0:0:94:3343:-301.053,-28.2968,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:84:0,84:0:0:84:3012:-271.293,-25.2865,0	0/1:91:61,30:61:2188:30:1067:-68.9187,0,-169.792	1/1:119:3,116:3:108:116:4136:-362.315,-25.7474,0	0/1:64:26,38:26:932:38:1364:-103.79,0,-64.9329	1/1:65:0,65:0:0:65:2280:-205.443,-19.567,0	0/1:54:30,24:30:1080:24:856:-61.1055,0,-81.2576	1/1:123:3,120:3:108:120:4255:-372.684,-26.9515,0	0/1:40:27,13:27:968:13:464:-30.0317,0,-75.3503	0/1:90:40,50:40:1427:50:1792:-134.283,0,-101.634	1/1:90:0,90:0:0:90:3188:-287.102,-27.0927,0	0/1:35:17,18:17:597:18:644:-47.7545,0,-43.5201	0/1:61:27,34:27:964:34:1182:-88.3131,0,-68.714	0/1:76:45,31:45:1600:31:1112:-77.5107,0,-121.41	1/1:142:0,142:0:0:142:5057:-454.893,-42.7463,0	1/1:85:1,84:1:36:84:2973:-264.194,-21.9893,0
chr09	17076924	.	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chr09	17105065	.	GTCCT	ATCCT	67046.7	PASS	AB=0.511359;ABP=11.3474;AC=61;AF=0.324468;AN=188;AO=3807;CIGAR=1X4M;DP=11681;DPB=11681;DPRA=0.955014;EPP=7807.42;EPPR=15881.1;GTI=0;LEN=1;MEANALT=1.52381;MQM=59.9322;MQMR=59.9845;NS=94;NUMALT=1;ODDS=4.67568;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135698;QR=274422;RO=7808;RPL=54;RPP=7807.42;RPPR=15889.5;RPR=3753;RUN=1;SAF=3807;SAP=8269.81;SAR=0;SRF=7807;SRP=16949.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:9,12:9:309:12:432:-32.6805,0,-21.6	0/0:179:179,0:179:6273:0:0:0,-53.8844,-564.677	0/0:163:163,0:163:5739:0:0:0,-49.0679,-516.637	0/0:256:256,0:256:8978:0:0:0,-77.0637,-808.02	0/1:75:43,31:43:1530:31:1116:-78.1157,0,-115.356	0/1:86:40,41:40:1386:41:1476:-108.396,0,-100.298	0/0:219:216,0:216:7621:0:0:0,-65.0225,-685.596	0/1:244:123,121:123:4253:121:4312:-314.529,0,-309.505	0/1:114:72,42:72:2529:42:1478:-98.9931,0,-193.534	0/1:116:49,67:49:1703:67:2367:-178.364,0,-118.633	0/1:125:64,61:64:2277:61:2173:-158.206,0,-167.564	0/0:68:66,0:66:2341:0:0:0,-19.868,-210.591	0/1:97:45,52:45:1599:52:1856:-138.118,0,-115.001	0/1:94:45,49:45:1594:49:1748:-129.035,0,-115.453	0/1:79:35,43:35:1231:43:1544:-115.413,0,-87.254	0/1:73:43,29:43:1531:29:1036:-71.52,0,-116.05	0/1:93:49,44:49:1743:44:1576:-114.135,0,-129.159	0/1:78:36,41:36:1258:41:1468:-108.877,0,-89.9823	0/0:101:101,0:101:3553:0:0:0,-30.404,-319.982	0/1:256:118,137:118:4149:137:4898:-363.846,0,-296.479	0/1:169:79,87:79:2785:87:3098:-228.783,0,-200.631	0/1:97:37,60:37:1307:60:2114:-161.326,0,-88.7309	0/0:144:144,0:144:5052:0:0:0,-43.3483,-454.835	0/1:69:50,18:50:1746:18:648:-37.8689,0,-136.641	0/0:95:94,0:94:3271:0:0:0,-28.2968,-294.392	0/1:432:212,217:212:7414:217:7732:-566.449,0,-537.883	0/1:273:120,153:120:4226:153:5440:-407.544,0,-298.337	0/1:48:13,34:13:455:34:1220:-95.5986,0,-26.775	0/1:292:134,158:134:4719:158:5631:-418.999,0,-336.975	0/1:157:88,69:88:3116:69:2427:-171.417,0,-233.407	0/1:209:105,102:105:3703:102:3619:-263.24,0,-270.805	0/0:11:11,0:11:364:0:0:0,-3.31133,-33.0792	0/1:31:14,17:14:499:17:597:-44.7242,0,-35.9139	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:14:8,6:8:281:6:216:-15.5761,0,-21.416	0/1:20:6,14:6:207:14:500:-39.3156,0,-12.9463	0/1:228:101,125:101:3556:125:4458:-333.026,0,-251.888	0/1:205:84,115:84:2945:115:4113:-310.08,0,-205.021	0/1:107:57,48:57:1980:48:1724:-123.477,0,-146.504	0/0:6:6,0:6:211:0:0:0,-1.80618,-19.3333	0/0:167:167,0:167:5864:0:0:0,-50.272,-527.883	0/1:54:22,32:22:776:32:1152:-87.7345,0,-53.9058	0/1:105:57,47:57:2005:47:1662:-118.193,0,-149.055	0/1:120:60,60:60:2113:60:2144:-157.104,0,-154.314	0/1:88:42,46:42:1458:46:1656:-122.838,0,-105.021	0/0:97:97,0:97:3427:0:0:0,-29.1999,-308.645	0/1:183:97,85:97:3428:85:2996:-214.865,0,-253.723	0/0:187:186,0:186:6457:0:0:0,-55.9916,-580.876	0/0:164:163,0:163:5708:0:0:0,-49.0679,-513.649	0/1:193:94,99:94:3332:99:3529:-259.72,0,-242.002	0/0:151:151,0:151:5295:0:0:0,-45.4555,-476.695	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/0:126:126,0:126:4459:0:0:0,-37.9298,-401.485	0/0:67:67,0:67:2365:0:0:0,-20.169,-213.109	0/1:26:13,13:13:446:13:468:-34.6329,0,-32.64	0/1:152:82,70:82:2874:70:2498:-179.313,0,-213.143	0/1:63:44,18:44:1525:18:633:-38.2718,0,-118.516	0/1:9:5,4:5:164:4:144:-10.6043,0,-12.3729	0/1:31:9,22:9:321:22:792:-62.2737,0,-19.9015	0/1:138:71,65:71:2457:65:2306:-166.556,0,-180.143	0/1:115:44,70:44:1533:70:2516:-192.014,0,-103.582	0/0:5:4,0:4:144:0:0:0,-1.20412,-12.9538	0/1:186:74,111:74:2590:111:3958:-300.347,0,-177.298	0/1:254:127,126:127:4478:126:4513:-329.936,0,-326.796	0/1:82:41,40:41:1444:40:1421:-103.442,0,-105.512	0/0:116:114,0:114:4014:0:0:0,-34.3174,-361.094	0/1:242:102,140:102:3555:140:4964:-374.008,0,-247.311	0/1:173:65,108:65:2291:108:3820:-291.915,0,-154.374	0/0:65:65,0:65:2289:0:0:0,-19.5669,-206.273	0/0:139:138,0:138:4879:0:0:0,-41.5421,-438.907	0/1:118:50,67:50:1750:67:2392:-179.957,0,-122.202	0/1:27:14,13:14:485:13:468:-34.3318,0,-35.8495	0/0:136:136,0:136:4814:0:0:0,-40.9401,-433.422	0/1:91:45,44:45:1594:44:1550:-112.637,0,-116.599	0/0:225:219,0:219:7644:0:0:0,-65.9256,-687.676	0/0:181:181,0:181:6411:0:0:0,-54.4864,-577.086	0/1:152:93,58:93:3261:58:2073:-141.023,0,-247.899	0/0:118:116,2:116:4094:2:72:0,-28.6848,-361.815	0/1:19:13,6:13:466:6:216:-14.0709,0,-36.5592	0/0:138:138,0:138:4847:0:0:0,-41.5421,-436.386	0/1:128:75,53:75:2651:53:1891:-131.916,0,-200.307	0/0:311:309,0:309:10807:0:0:0,-93.0183,-972.251	0/1:143:79,64:79:2818:64:2296:-163.854,0,-210.813	0/0:84:84,0:84:2973:0:0:0,-25.2865,-267.803	0/1:127:56,71:56:1965:71:2544:-190.98,0,-138.893	0/0:174:174,0:174:6149:0:0:0,-52.3792,-553.517	0/1:69:44,24:44:1572:24:860:-56.892,0,-120.942	0/1:84:41,43:41:1461:43:1533:-112.939,0,-106.5	0/0:90:90,0:90:3167:0:0:0,-27.0927,-285.258	0/1:94:46,48:46:1618:48:1694:-124.417,0,-117.611	0/1:174:76,98:76:2679:98:3520:-264.629,0,-188.978	0/1:91:29,62:29:1031:62:2224:-173.022,0,-65.7096	0/0:104:103,0:103:3584:0:0:0,-31.0061,-322.413	0/0:152:151,1:151:5312:1:36:0,-42.1583,-474.607
chr09	17149225	.	G	T	72647.4	PASS	AB=0.438558;ABP=154.04;AC=123;AF=0.66129;AN=186;AO=4306;CIGAR=1X;DP=6910;DPB=6910;DPRA=75.0978;EPP=9353.37;EPPR=5644.5;GTI=3;LEN=1;MEANALT=1.02174;MQM=36.0455;MQMR=59.9981;NS=93;NUMALT=1;ODDS=0.465568;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153971;QR=92628;RO=2602;RPL=0;RPP=9353.37;RPPR=5644.5;RPR=4306;RUN=1;SAF=4306;SAP=9353.37;SAR=0;SRF=2602;SRP=5653.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:9,6:9:324:6:216:-14.4842,0,-24.9904	1/1:75:0,74:0:0:74:2649:-227.43,-22.2762,0	1/1:59:0,59:0:0:59:2120:-182.268,-17.7608,0	1/1:116:1,115:1:36:115:4121:-328.187,-31.3212,0	0/1:57:39,18:39:1404:18:648:-35.5212,0,-109.501	0/1:33:18,15:18:618:15:540:-35.7882,0,-46.0043	1/1:88:0,88:0:0:88:3107:-251.409,-26.4906,0	0/1:160:90,70:90:3205:70:2479:-162.991,0,-240.508	0/1:52:18,34:18:648:34:1188:-87.0149,0,-42.9983	0/1:98:55,43:55:1976:43:1529:-93.6008,0,-148.614	0/1:60:30,30:30:1050:30:1061:-68.1955,0,-76.7445	1/1:76:0,76:0:0:76:2736:-235.027,-22.8783,0	0/1:75:46,29:46:1637:29:1044:-66.4463,0,-125.039	0/1:60:37,23:37:1328:23:824:-50.2361,0,-101.76	0/1:62:29,33:29:1044:33:1188:-77.5263,0,-75.6109	0/1:36:20,16:20:705:16:576:-36.3009,0,-52.9357	0/1:47:24,23:24:856:23:824:-57.1758,0,-63.2127	0/1:68:38,30:38:1353:30:1080:-71.0655,0,-101.598	1/1:41:0,41:0:0:41:1472:-124.4,-12.3422,0	0/1:202:99,103:99:3522:103:3636:-231.454,0,-256.38	0/1:111:51,60:51:1791:60:2132:-139.79,0,-128.052	0/1:66:39,27:39:1358:27:972:-58.4933,0,-102.646	1/1:35:0,35:0:0:35:1260:-100.83,-10.5361,0	0/1:56:44,12:44:1576:12:432:-18.7418,0,-125.274	1/1:27:0,27:0:0:27:972:-80.4962,-8.12781,0	0/1:258:162,96:162:5732:96:3437:-199.464,0,-438.329	0/1:151:72,79:72:2576:79:2836:-187.016,0,-186.634	0/1:52:30,22:30:1080:22:784:-48.7176,0,-81.8597	0/1:213:102,111:102:3633:111:3967:-255.898,0,-263.055	0/1:119:87,32:87:3109:32:1129:-57.2774,0,-244.213	0/1:90:55,35:55:1980:35:1245:-73.1876,0,-151.382	1/1:4:0,4:0:0:4:144:-12.2064,-1.20412,0	0/1:5:3,2:3:108:2:72:-4.763,0,-8.57002	1/1:3:0,3:0:0:3:108:-9.67257,-0.90309,0	0/1:8:6,2:6:216:2:72:-3.3897,0,-17.3823	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:201:116,85:116:4168:85:3056:-186.453,0,-314.794	0/1:187:118,69:118:4210:69:2476:-145.592,0,-322.786	0/1:52:30,22:30:1076:22:792:-52.4092,0,-81.4993	.:.:.:.:.:.:.:.	1/1:142:1,141:1:36:141:5052:-413.031,-39.148,0	0/1:50:23,27:23:824:27:957:-64.2483,0,-59.4318	0/1:45:28,17:28:993:17:597:-36.1603,0,-76.1362	0/1:75:39,35:39:1400:35:1256:-80.2873,0,-103.809	0/1:75:31,44:31:1112:44:1561:-102.912,0,-77.8141	1/1:74:0,74:0:0:74:2631:-211.77,-22.2762,0	0/1:99:69,30:69:2461:30:1042:-59.8621,0,-191.941	1/1:135:0,135:0:0:135:4821:-388.879,-40.6391,0	1/1:50:0,50:0:0:50:1800:-145.877,-15.0515,0	0/1:88:31,57:31:1116:57:2037:-138.681,0,-74.2611	1/1:36:0,36:0:0:36:1296:-103.925,-10.8371,0	0/1:3:2,1:2:72:1:36:-2.34307,0,-5.93363	1/1:201:1,200:1:36:200:7192:-614.497,-56.9088,0	1/1:28:1,27:1:36:27:957:-73.7684,-4.83057,0	0/0:11:10,1:10:360:1:32:0,-0.175184,-29.6082	0/1:86:53,33:53:1870:33:1188:-71.727,0,-142.685	0/1:38:30,8:30:1027:8:288:-12.2578,0,-81.2928	0/1:4:2,2:2:72:2:72:-4.96358,0,-5.6326	0/1:12:2,10:2:57:10:341:-24.6669,0,-1.80095	0/1:47:23,24:23:820:24:860:-57.2795,0,-59.9741	0/1:105:51,54:51:1836:54:1929:-123.152,0,-133.912	1/1:7:0,7:0:0:7:239:-19.6791,-2.10721,0	0/1:161:85,76:85:3010:76:2728:-170.056,0,-222.664	0/1:137:86,51:86:3073:51:1809:-106.714,0,-235.556	0/1:57:29,28:29:1040:28:1000:-65.1823,0,-76.7557	1/1:56:0,56:0:0:56:2001:-161.607,-16.8577,0	0/1:124:71,53:71:2518:53:1889:-115.221,0,-189.541	0/1:62:51,11:51:1798:11:396:-13.9871,0,-143.434	1/1:14:0,14:0:0:14:500:-40.921,-4.21442,0	1/1:20:0,20:0:0:20:705:-59.8369,-6.0206,0	0/1:83:48,35:48:1724:35:1256:-76.0824,0,-130.46	0/1:10:7,3:7:252:3:108:-6.07895,0,-20.0187	1/1:43:0,43:0:0:43:1544:-133.747,-12.9443,0	0/1:33:16,17:16:576:17:597:-40.5732,0,-42.241	1/1:98:0,98:0:0:98:3501:-285.835,-29.5009,0	1/1:118:1,117:1:36:117:4204:-333.565,-31.9233,0	0/1:75:58,17:58:2008:17:597:-29.3074,0,-158.409	1/1:67:0,67:0:0:67:2370:-204.613,-20.169,0	0/1:4:1,3:1:36:3:108:-8.46845,0,-2.39415	1/1:87:0,87:0:0:87:3124:-254.209,-26.1896,0	0/1:75:33,42:33:1158:42:1512:-108.32,0,-81.9453	1/1:183:0,183:0:0:183:6569:-526.92,-55.0885,0	0/1:95:51,44:51:1836:44:1569:-96.7048,0,-136.923	1/1:51:0,51:0:0:51:1820:-148.928,-15.3525,0	0/1:78:40,38:40:1421:38:1364:-86.8744,0,-104.705	1/1:124:1,123:1:36:123:4409:-352.838,-33.7294,0	0/1:43:22,21:22:784:21:756:-51.7327,0,-57.9396	0/1:100:52,48:52:1864:48:1719:-118.52,0,-137.936	1/1:72:0,72:0:0:72:2588:-220.79,-21.6742,0	0/1:22:12,10:12:417:10:360:-23.3985,0,-31.2376	0/1:69:33,36:33:1188:36:1296:-84.9165,0,-86.4575	0/1:57:39,18:39:1370:18:644:-35.8711,0,-106.436	1/1:72:0,72:0:0:72:2584:-209.22,-21.6742,0	1/1:90:0,90:0:0:90:3236:-262.359,-27.0927,0
chr09	17159909	.	TTCA	ATCA,ATGA	254226	PASS	AB=0.500783,0.493471;ABP=3.05113,5.84586;AC=127,61;AF=0.675532,0.324468;AN=188;AO=8297,3791;CIGAR=1X3M,1X1M1X1M;DP=12157;DPB=12157.2;DPRA=0,1.08973;EPP=18002.3,8235.06;EPPR=9.52472;GTI=1;LEN=1,4;MEANALT=2.32979,2.58209;MQM=59.882,58.7869;MQMR=60;NS=94;NUMALT=2;ODDS=1.05892;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.333333;PQA=12,12;PQR=0;PRO=1;QA=297182,133315;QR=93;RO=3;RPL=8295,3791;RPP=18002.3,8235.06;RPPR=9.52472;RPR=2,0;RUN=1,1;SAF=8297,3791;SAP=18019.7,8235.06;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:20:0,6,13:0:0:6,13:212,460:-54.8109,-37.5541,-35.7479,-17.344,0,-13.4306	1/1:251:0,250,0:0:0:250,0:8941,0:-804.24,-75.2575,0,-804.24,-75.2575,-804.24	1/1:152:0,152,0:0:0:152,0:5455,0:-491.072,-45.7566,0,-491.072,-45.7566,-491.072	1/1:344:0,343,0:0:0:343,0:12264,0:-1103.19,-103.253,0,-1103.19,-103.253,-1103.19	1/2:81:0,41,40:0:0:41,40:1460,1419:-234.829,-115.83,-103.488,-119.354,0,-107.313	1/2:41:0,18,22:0:0:18,22:644,774:-115.507,-62.9907,-57.5721,-52.5852,0,-45.9626	1/1:76:0,76,0:0:0:76,0:2710,0:-244.142,-22.8783,0,-244.142,-22.8783,-244.142	1/2:251:0,139,110:0:0:139,110:4963,3909:-722.58,-317.968,-276.125,-404.612,0,-371.498	1/2:50:0,27,23:0:0:27,23:968,797:-143.994,-65.0363,-56.9085,-79.3096,0,-72.3859	1/2:56:0,25,30:0:0:25,30:891,1042:-157.291,-84.6602,-77.1344,-72.6264,0,-63.5955	1/2:74:0,36,37:0:0:36,37:1292,1294:-210.472,-105.08,-94.2426,-105.39,0,-94.2518	1/1:100:0,99,0:0:0:99,0:3560,0:-320.241,-29.802,0,-320.241,-29.802,-320.241	1/2:92:0,49,43:0:0:49,43:1755,1515:-266.598,-123.473,-108.723,-143.48,0,-130.535	1/2:58:0,27,28:0:0:27,28:968,995:-160.025,-81.0826,-72.9548,-78.9452,0,-70.5164	1/2:110:0,55,55:0:0:55,55:1976,1956:-320.937,-159.736,-143.179,-161.558,0,-145.001	1/2:65:0,32,33:0:0:32,33:1130,1165:-187.153,-95.1316,-85.4986,-92.374,0,-82.44	1/2:67:0,28,39:0:0:28,39:992,1380:-193.303,-112.492,-104.063,-81.1646,0,-69.4245	1/2:84:0,46,38:0:0:46,38:1639,1349:-243.833,-110.239,-96.3914,-133.949,0,-122.51	1/1:72:0,72,0:0:0:72,0:2575,0:-231.873,-21.6742,0,-231.873,-21.6742,-231.873	1/2:426:0,227,198:0:0:227,198:8144,6977:-1232.17,-567.889,-499.555,-664.369,0,-604.765	1/2:185:0,97,88:0:0:97,88:3457,3067:-531.494,-249.705,-220.505,-282.141,0,-255.65	1/2:212:0,69,139:0:0:69,139:2472,4842:-595.161,-393.555,-372.784,-201.615,0,-159.772	1/1:162:0,161,0:0:0:161,0:5775,0:-519.205,-48.4658,0,-519.205,-48.4658,-519.205	1/2:129:0,54,75:0:0:54,75:1940,2666:-375.651,-217.387,-201.132,-158.621,0,-136.043	1/1:84:0,82,0:0:0:82,0:2932,0:-263.82,-24.6845,0,-263.82,-24.6845,-263.82	1/2:594:0,319,270:0:0:319,270:11416,9502:-1704.14,-773.319,-677.29,-930.834,0,-849.556	1/2:300:0,161,135:0:0:161,135:5757,4795:-859.916,-390.549,-342.083,-469.43,0,-428.791	1/2:67:1,32,33:1:36:32,33:1148,1124:-181.365,-88.0187,-81.3237,-90.6997,0,-83.7031	1/2:404:0,195,208:0:0:195,208:6992,7305:-1164.62,-594.374,-535.673,-570.324,0,-507.709	1/2:147:0,95,52:0:0:95,52:3385,1847:-426.271,-150.359,-121.761,-276.267,0,-260.613	1/2:128:0,58,70:0:0:58,70:2064,2410:-363.967,-195.75,-178.291,-168.567,0,-147.495	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:15:0,5,10:0:0:5,10:180,335:-42.1578,-27.4624,-25.9573,-15.0469,0,-12.0366	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:5:0,4,1:0:0:4,1:144,36:-15.046,-3.29624,-2.09212,-12.1095,0,-11.8085	1/2:2:0,1,1:0:0:1,1:36,36:-6.23371,-3.29624,-2.99521,-3.29724,0,-2.99621	1/2:292:0,152,138:0:0:152,138:5442,4865:-839.888,-396.092,-350.335,-443.86,0,-402.318	1/2:220:0,110,108:0:0:110,108:3952,3785:-630.29,-307.892,-274.778,-322.534,0,-290.023	1/2:107:0,40,67:0:0:40,67:1432,2358:-308.874,-192.093,-180.052,-117.136,0,-96.9674	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:198:0,192,5:0:0:192,5:6868,162:-617.871,-57.7978,0,-604.808,-44.6974,-603.303	1/2:43:0,15,27:0:0:15,27:540,929:-119.409,-75.3404,-70.8249,-44.2019,0,-36.0741	1/2:111:0,71,40:0:0:71,40:2548,1416:-323.476,-115.634,-94.2611,-208.197,0,-196.156	1/2:111:0,60,51:0:0:60,51:2152,1801:-322.406,-146.873,-128.811,-175.828,0,-160.475	1/2:94:0,43,50:0:0:43,50:1548,1726:-266.625,-140.322,-127.377,-126.442,0,-111.39	1/1:92:0,90,0:0:0:90,0:3236,0:-291.083,-27.0927,0,-291.083,-27.0927,-291.083	1/2:175:0,81,94:0:0:81,94:2896,3293:-504.106,-268.145,-243.761,-236.315,0,-208.019	1/1:220:0,219,0:0:0:219,0:7806,0:-702.17,-65.9256,0,-702.17,-65.9256,-702.17	1/1:177:0,176,0:0:0:176,0:6316,0:-568.131,-52.9813,0,-568.131,-52.9813,-568.131	1/2:171:0,94,76:0:0:94,76:3376,2706:-495.529,-220.128,-191.831,-275.398,0,-252.52	1/1:218:0,216,2:0:0:216,2:7696,64:-692.334,-65.0225,0,-687.196,-59.565,-686.594	1/2:12:0,6,5:0:0:6,5:216,180:-32.3145,-14.6897,-12.8835,-17.6272,0,-16.1221	1/1:153:0,153,0:0:0:153,0:5488,0:-494.015,-46.0576,0,-494.015,-46.0576,-494.015	1/1:135:0,135,0:0:0:135,0:4841,0:-435.794,-40.6391,0,-435.794,-40.6391,-435.794	1/2:7:0,4,3:0:0:4,3:144,108:-20.919,-9.16926,-7.96514,-12.1095,0,-11.2064	1/2:178:0,81,97:0:0:81,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chr09	17170118	.	A	T	156652	PASS	AB=0.508638;ABP=7.66181;AC=127;AF=0.682796;AN=186;AO=7694;CIGAR=1X;DP=11251;DPB=11251;DPRA=0;EPP=16710.3;EPPR=7726.94;GTI=1;LEN=1;MEANALT=1;MQM=59.8746;MQMR=59.9269;NS=93;NUMALT=1;ODDS=2.08001;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275732;QR=127350;RO=3557;RPL=7675;RPP=16545.7;RPPR=7657.61;RPR=19;RUN=1;SAF=19;SAP=16545.7;SAR=7675;SRF=8;SRP=7657.61;SRR=3549;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:35,29:35:1252:29:1040:-74.6484,0,-93.711	1/1:201:0,201:0:0:201:7197:-647.783,-60.507,0	1/1:124:0,124:0:0:124:4429:-398.781,-37.3277,0	1/1:174:4,170:4:144:170:6108:-536.504,-39.0656,0	0/1:114:52,62:52:1868:62:2228:-166.466,0,-134.082	0/1:75:27,48:27:972:48:1728:-133.227,0,-65.2125	1/1:109:0,109:0:0:109:3900:-351.194,-32.8123,0	0/1:219:126,93:126:4504:93:3325:-233.539,0,-339.595	0/1:167:60,107:60:2144:107:3836:-295.164,0,-142.956	0/1:125:65,60:65:2324:60:2152:-156.305,0,-171.791	0/1:42:17,25:17:608:25:900:-68.6778,0,-42.4088	1/1:97:1,96:1:36:96:3440:-306.215,-25.6016,0	0/1:86:47,39:47:1692:39:1404:-100.771,0,-126.678	0/1:60:37,23:37:1324:23:828:-56.1533,0,-101.4	0/1:108:48,60:48:1707:60:2156:-161.796,0,-121.375	0/1:83:42,41:42:1500:41:1472:-107.791,0,-110.287	0/1:96:55,41:55:1972:41:1468:-102.262,0,-148.856	0/1:85:41,44:41:1472:44:1580:-116.904,0,-107.144	1/1:28:2,26:2:72:26:936:-77.7227,-1.59212,0	0/1:776:376,400:376:13480:400:14345:-1057.1,0,-979.388	0/1:207:92,115:92:3288:115:4124:-309.03,0,-233.827	0/1:80:53,27:53:1904:27:964:-62.9944,0,-147.555	1/1:72:1,71:1:36:71:2533:-224.621,-18.0759,0	0/1:151:88,63:88:3140:63:2256:-157.847,0,-237.371	1/1:97:0,97:0:0:97:3476:-313.029,-29.1999,0	0/1:304:158,146:158:5660:146:5240:-380.223,0,-418.002	0/1:311:148,163:148:5296:163:5828:-431.007,0,-383.155	0/1:57:32,25:32:1144:25:900:-64.1623,0,-86.1108	0/1:344:124,220:124:4432:220:7868:-604.594,0,-295.498	0/1:98:47,51:47:1680:51:1817:-134.308,0,-121.986	0/1:108:56,52:56:1997:52:1864:-135.528,0,-147	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:265:147,118:147:5264:118:4210:-298.605,0,-394.123	0/1:115:60,55:60:2148:55:1972:-143.136,0,-158.969	0/1:59:20,39:20:708:39:1400:-108.538,0,-46.2848	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:169:3,166:3:108:166:5945:-525.058,-40.7989,0	0/1:57:18,39:18:648:39:1404:-108.245,0,-41.4932	0/1:181:84,97:84:2981:97:3484:-258.602,0,-214.034	0/1:106:50,56:50:1796:56:2008:-149.084,0,-130.013	0/1:74:48,26:48:1724:26:917:-59.9397,0,-133.169	1/1:98:0,98:0:0:98:3508:-315.93,-29.5009,0	0/1:174:86,88:86:3084:88:3156:-231.885,0,-225.408	1/1:159:1,158:1:36:158:5660:-504.667,-44.2655,0	1/1:128:0,128:0:0:128:4592:-412.191,-38.5318,0	0/1:128:58,70:58:2084:70:2474:-183.119,0,-149.298	1/1:256:1,255:1:36:255:9137:-817.847,-73.4654,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:200:5,195:5:180:195:6966:-609.09,-43.6539,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:140:46,94:46:1632:94:3380:-262.27,0,-104.397	0/1:37:14,23:14:496:23:824:-63.3452,0,-33.8362	.:.:.:.:.:.:.:.	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:105:55,50:55:1964:50:1784:-129.235,0,-145.427	0/1:118:64,54:64:2285:54:1940:-139.355,0,-170.388	1/1:17:0,17:0:0:17:585:-52.9612,-5.11751,0	0/1:192:95,97:95:3412:97:3480:-255.613,0,-249.496	0/1:188:68,120:68:2428:120:4297:-330.311,0,-162.024	0/1:86:53,33:53:1900:33:1184:-80.2779,0,-145.389	1/1:119:2,117:2:68:117:4176:-369.566,-29.3649,0	0/1:137:88,49:88:3144:49:1760:-117.443,0,-241.916	0/1:82:50,32:50:1796:32:1148:-78.9454,0,-137.238	1/1:25:1,24:1:36:24:864:-74.4843,-3.92748,0	1/1:134:0,134:0:0:134:4797:-431.884,-40.338,0	0/1:113:63,50:63:2248:50:1800:-126.155,0,-168.14	0/1:35:20,15:20:716:15:536:-38.0388,0,-54.2317	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	0/1:85:37,48:37:1328:48:1705:-128.146,0,-94.2347	1/1:193:0,193:0:0:193:6920:-620.431,-58.0988,0	1/1:193:0,193:0:0:193:6928:-622.957,-58.0988,0	0/1:146:60,86:60:2156:86:3092:-234.556,0,-150.357	1/1:159:1,158:1:36:158:5657:-505.65,-44.2655,0	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:196:1,195:1:36:195:7004:-626.822,-55.4036,0	0/1:143:73,70:73:2620:70:2512:-183.284,0,-193	1/1:393:0,393:0:0:393:14081:-1267.05,-118.305,0	0/1:103:51,52:51:1832:52:1872:-137.126,0,-134.155	1/1:77:0,77:0:0:77:2759:-248.552,-23.1793,0	0/1:123:73,50:73:2620:50:1796:-124.896,0,-199.021	1/1:167:4,163:4:144:163:5860:-514.181,-36.9584,0	0/1:45:17,28:17:612:28:1004:-77.0734,0,-41.8317	0/1:94:61,33:61:2184:33:1188:-78.9318,0,-168.529	1/1:79:2,77:2:72:77:2768:-242.524,-16.9446,0	0/1:45:15,30:15:536:30:1080:-83.9669,0,-35.0285	0/1:76:29,47:29:1040:47:1688:-129.329,0,-71.0337	0/1:102:69,33:69:2484:33:1188:-76.5235,0,-193.108	1/1:147:0,147:0:0:147:5276:-474.974,-44.2514,0	1/1:147:1,146:1:36:146:5248:-468.856,-40.6531,0
chr09	17188682	.	A	T,C	235586	PASS	AB=0.489746,0.509984;ABP=9.77901,9.42745;AC=126,62;AF=0.670213,0.329787;AN=188;AO=7389,3801;CIGAR=1X,1X;DP=11193;DPB=11193;DPRA=17.1828,1.26576;EPP=16048,8248.09;EPPR=9.52472;GTI=1;LEN=1,1;MEANALT=1.70968,1.98507;MQM=59.9786,59.96;MQMR=60;NS=94;NUMALT=2;ODDS=5.10558;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=263931,136118;QR=93;RO=3;RPL=0,0;RPP=16048,8256.78;RPPR=9.52472;RPR=7389,3801;RUN=1,1;SAF=7389,3800;SAP=16048,8248.09;SAR=0,1;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:17:0,6,11:0:0:6,11:212,392:-49.5731,-32.3087,-30.5025,-17.6186,0,-14.3073	1/1:258:0,258,0:0:0:258,0:9210,0:-828.87,-77.6657,0,-828.87,-77.6657,-828.87	1/1:141:0,141,0:0:0:141,0:5015,0:-451.495,-42.4452,0,-451.495,-42.4452,-451.495	1/1:255:0,253,2:0:0:253,2:9054,72:-814.473,-76.1606,0,-808.598,-69.9259,-807.996	1/2:204:0,89,115:0:0:89,115:3196,4128:-597.797,-337.085,-310.293,-261.071,0,-226.452	1/2:84:0,31,53:0:0:31,53:1093,1880:-242.517,-153.524,-144.192,-89.3457,0,-73.3911	1/1:75:0,74,1:0:0:74,1:2641,36:-237.575,-22.2762,0,-234.638,-18.979,-234.337	1/2:122:0,48,74:0:0:48,74:1728,2612:-354.02,-213.021,-198.571,-141.356,0,-119.08	1/2:48:0,25,23:0:0:25,23:840,828:-135.949,-67.9204,-60.3947,-68.3773,0,-61.4536	1/2:89:0,39,50:0:0:39,50:1404,1796:-261.43,-146.871,-135.131,-114.919,0,-99.8676	1/2:85:0,47,38:0:0:47,38:1692,1364:-249.68,-111.621,-97.4728,-138.418,0,-126.979	1/1:88:0,88,0:0:0:88,0:3164,0:-284.979,-26.4906,0,-284.979,-26.4906,-284.979	1/2:89:0,45,44:0:0:45,44:1591,1584:-259.179,-129.603,-116.056,-129.933,0,-116.688	1/2:99:0,44,55:0:0:44,55:1580,1976:-290.445,-161.558,-148.313,-129.246,0,-112.69	1/2:85:0,34,51:0:0:34,51:1216,1828:-248.602,-149.448,-139.213,-99.5115,0,-84.159	1/2:93:0,39,54:0:0:39,54:1385,1939:-271.38,-158.531,-146.791,-113.206,0,-96.9504	1/2:99:0,47,52:0:0:47,52:1677,1864:-289.095,-152.386,-138.237,-137.067,0,-121.413	1/2:77:0,34,43:0:0:34,43:1215,1548:-225.731,-126.669,-116.434,-99.4207,0,-86.4764	1/1:54:0,54,0:0:0:54,0:1940,0:-174.876,-16.2556,0,-174.876,-16.2556,-174.876	1/2:249:0,142,107:0:0:142,107:5050,3848:-725.828,-314.289,-271.543,-411.896,0,-379.686	1/2:107:0,60,47:0:0:60,47:2125,1684:-310.798,-137.699,-119.637,-173.455,0,-159.307	1/2:229:0,98,131:0:0:98,131:3528,4684:-670.152,-382.285,-352.784,-288.226,0,-248.791	1/1:51:0,51,0:0:0:51,0:1836,0:-165.521,-15.3525,0,-165.521,-15.3525,-165.521	1/2:114:0,61,53:0:0:61,53:2177,1877:-330.729,-153.252,-134.89,-177.832,0,-161.877	1/1:50:0,50,0:0:0:50,0:1800,0:-162.282,-15.0515,0,-162.282,-15.0515,-162.282	1/2:351:0,187,164:0:0:187,164:6673,5848:-1021.04,-477.063,-420.771,-544.337,0,-494.968	1/2:224:1,115,108:1:21:115,108:4089,3857:-645.932,-313.013,-279.982,-331.777,0,-300.854	1/2:40:0,23,17:0:0:23,17:828,608:-117.496,-49.9345,-43.0108,-67.9204,0,-62.8029	1/2:403:0,197,206:0:0:197,206:7031,7391:-1176.41,-603.222,-543.919,-573.546,0,-511.534	1/2:121:0,67,54:0:0:67,54:2404,1936:-354.35,-158.261,-138.092,-196.447,0,-180.192	1/2:108:0,53,55:0:0:53,55:1885,1971:-314.723,-161.108,-145.154,-153.972,0,-137.415	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:24:0,15,9:0:0:15,9:536,324:-70.4971,-26.7966,-22.2811,-44.0594,0,-41.3501	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	2/2:7:0,0,7:0:0:0,7:0,252:-23.029,-23.029,-23.029,-2.10721,-2.10721,0	1/2:15:0,2,13:0:0:2,13:72,464:-44.0594,-38.1841,-37.5821,-6.23466,0,-2.32127	1/2:307:0,138,169:0:0:138,169:4941,6078:-899.182,-496.245,-454.702,-403.296,0,-352.422	1/2:275:1,157,117:1:36:157,117:5602,4185:-794.466,-338.312,-293.988,-453.515,0,-421.231	1/2:75:0,32,43:0:0:32,43:1152,1548:-220.666,-126.669,-117.036,-94.3572,0,-81.4129	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:172:0,168,4:0:0:168,4:5999,144:-539.652,-50.573,0,-527.902,-38.4635,-526.698	1/2:35:0,12,23:0:0:12,23:432,828:-103.169,-67.9204,-64.3081,-35.6088,0,-28.6851	1/2:322:0,155,167:0:0:155,167:5522,5980:-938.051,-488.034,-441.374,-450.373,0,-400.101	1/2:122:0,61,61:0:0:61,61:2173,2188:-355.937,-178.823,-160.46,-177.472,0,-159.109	1/2:98:0,52,46:0:0:52,46:1837,1643:-283.91,-134.31,-118.657,-149.955,0,-136.108	1/1:64:0,64,0:0:0:64,0:2300,0:-207.261,-19.2659,0,-207.261,-19.2659,-207.261	1/2:164:0,88,76:0:0:88,76:3144,2728:-479.222,-222.884,-196.394,-256.695,0,-233.817	1/1:268:0,268,0:0:0:268,0:9571,0:-861.343,-80.676,0,-861.343,-80.676,-861.343	1/1:88:0,88,0:0:0:88,0:3136,0:-282.465,-26.4906,0,-282.465,-26.4906,-282.465	1/2:224:0,79,145:0:0:79,145:2825,5189:-653.847,-423.498,-399.717,-230.706,0,-187.056	1/1:140:0,139,1:0:0:139,1:4992,36:-449.066,-41.8432,0,-446.129,-38.5459,-445.828	1/2:14:0,9,5:0:0:9,5:324,180:-41.4837,-15.0469,-12.3376,-26.7966,0,-25.2914	1/1:139:0,139,0:0:0:139,0:4951,0:-445.737,-41.8432,0,-445.737,-41.8432,-445.737	1/1:22:0,22,0:0:0:22,0:773,0:-69.8895,-6.62266,0,-69.8895,-6.62266,-69.8895	1/2:20:0,7,13:0:0:7,13:252,464:-58.7471,-38.1841,-36.0769,-20.9217,0,-17.0084	1/2:162:0,81,81:0:0:81,81:2863,2895:-469.556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chr09	17188722	.	G	T	117319	PASS	AB=0.320093;ABP=3025.18;AC=124;AF=0.659574;AN=188;AO=7009;CIGAR=1X;DP=14622;DPB=14622;DPRA=15.7118;EPP=15222.9;EPPR=16491;GTI=16;LEN=1;MEANALT=1.13978;MQM=59.9862;MQMR=59.9621;NS=94;NUMALT=1;ODDS=0.736521;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241141;QR=268702;RO=7597;RPL=6999;RPP=15136.1;RPPR=15.7359;RPR=10;RUN=1;SAF=6999;SAP=15136.1;SAR=10;SRF=3692;SRP=15.9783;SRR=3905;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:55,7:55:1905:7:244:-3.63557,0,-153.06	1/1:244:0,244:0:0:244:8377:-753.962,-73.4513,0	1/1:134:0,134:0:0:134:4662:-419.748,-40.338,0	1/1:236:2,234:2:72:234:8110:-723.11,-64.2064,0	0/1:241:162,79:162:5770:79:2683:-169.17,0,-446.869	0/1:119:89,30:89:3173:30:1031:-57.2751,0,-249.971	1/1:72:1,71:1:36:71:2423:-214.728,-18.0759,0	0/1:217:170,47:170:6002:47:1641:-82.6524,0,-474.771	0/1:96:73,23:73:2590:23:749:-38.8142,0,-204.45	0/1:144:104,39:104:3644:39:1324:-76.0454,0,-284.757	0/1:150:106,43:106:3761:43:1477:-88.0055,0,-293.477	1/1:80:0,80:0:0:80:2689:-242.254,-24.0824,0	0/1:151:109,42:109:3860:42:1413:-82.0037,0,-302.138	0/1:147:102,45:102:3612:45:1503:-91.3035,0,-281.035	0/1:121:88,33:88:3091:33:1098:-62.6905,0,-241.992	0/1:128:89,39:89:3179:39:1336:-82.0027,0,-247.802	0/1:128:80,47:80:2789:47:1624:-107.855,0,-212.66	0/1:105:73,32:73:2600:32:1118:-69.3178,0,-202.641	1/1:49:0,49:0:0:49:1728:-155.805,-14.7505,0	0/1:417:281,136:281:9966:136:4684:-296.205,0,-771.304	0/1:213:163,49:163:5764:49:1702:-89.3253,0,-454.739	0/1:315:213,97:213:7547:97:3372:-210.04,0,-585.24	1/1:47:0,47:0:0:47:1624:-146.446,-14.1484,0	0/1:132:76,56:76:2675:56:1934:-134.6,0,-201.256	1/1:48:3,45:3:108:45:1541:-128.901,-4.37427,0	0/1:526:347,179:347:12312:179:6264:-405.518,0,-949.388	0/1:385:273,111:273:9625:111:3770:-223.552,0,-750.255	0/1:56:32,24:32:1115:24:831:-58.2481,0,-83.7961	0/1:571:383,188:383:13592:188:6484:-411.777,0,-1051.19	0/1:177:114,62:114:4042:62:2152:-140.604,0,-310.622	0/1:163:116,46:116:4125:46:1598:-94.9912,0,-322.316	1/1:20:0,20:0:0:20:688:-62.2375,-6.0206,0	0/1:29:13,16:13:455:16:556:-41.6373,0,-32.5521	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:22:20,2:20:708:2:63:0,-0.639505,-58.0591	0/1:419:284,135:284:9996:135:4617:-289.577,0,-773.461	0/1:345:200,145:200:7097:145:5029:-348.913,0,-534.94	0/1:103:72,31:72:2530:31:1072:-65.779,0,-196.944	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	1/1:172:10,162:10:356:162:5547:-467.018,-19.4195,0	0/1:55:44,11:44:1576:11:388:-18.7007,0,-125.575	0/1:452:307,145:307:10769:145:5036:-317.333,0,-833.066	0/1:143:86,57:86:3054:57:1909:-129.034,0,-232.042	0/1:135:89,46:89:3117:46:1586:-102.389,0,-240.118	1/1:65:0,65:0:0:65:2248:-202.581,-19.567,0	0/1:238:156,82:156:5542:82:2800:-180.596,0,-427.261	1/1:255:2,253:2:63:253:8722:-779.023,-70.7795,0	1/1:86:0,86:0:0:86:2962:-266.818,-25.8886,0	0/1:354:275,79:275:9777:79:2760:-142.079,0,-773.164	1/1:129:1,128:1:36:128:4417:-394.117,-35.2346,0	0/1:15:6,9:6:216:9:316:-24.2634,0,-15.2751	1/1:130:1,129:1:36:129:4404:-392.947,-35.5356,0	1/1:22:0,22:0:0:22:735:-66.4596,-6.62266,0	0/1:20:13,7:13:456:7:248:-16.6436,0,-35.3526	0/1:284:210,73:210:7399:73:2495:-139.255,0,-580.413	0/1:22:10,12:10:347:12:420:-31.5114,0,-24.941	0/1:23:16,7:16:572:7:231:-14.1895,0,-44.8897	0/1:23:19,4:19:652:4:140:-6.02089,0,-52.0746	0/1:119:91,28:91:3202:28:979:-52.5995,0,-252.581	0/1:209:147,62:147:5203:62:2126:-128.692,0,-405.497	1/1:21:0,21:0:0:21:732:-66.2014,-6.32163,0	0/1:327:215,112:215:7636:112:3840:-247.368,0,-588.842	0/1:344:211,133:211:7470:133:4573:-308.194,0,-568.793	0/1:135:83,52:83:2942:52:1775:-119.389,0,-224.373	1/1:133:0,133:0:0:133:4551:-409.772,-40.037,0	0/1:284:198,86:198:7049:86:2991:-183.931,0,-548.924	0/0:246:231,15:231:8202:15:504:0,-28.3751,-692.518	1/1:22:1,21:1:36:21:731:-62.5122,-3.02439,0	1/1:33:0,33:0:0:33:1131:-102.092,-9.93399,0	0/1:135:79,56:79:2814:56:1952:-135.314,0,-212.86	0/1:16:12,4:12:423:4:144:-8.49714,0,-33.5886	1/1:43:0,43:0:0:43:1447:-130.516,-12.9443,0	0/1:114:90,24:90:3190:24:848:-42.3222,0,-253.007	1/1:130:1,129:1:36:129:4413:-393.754,-35.5356,0	1/1:227:0,227:0:0:227:7826:-704.401,-68.3338,0	0/1:399:243,156:243:8573:156:5419:-367.711,0,-651.465	1/1:173:4,169:4:140:169:5817:-510.719,-39.1336,0	0/1:24:13,11:13:459:11:396:-28.758,0,-34.4194	1/1:189:3,186:3:108:186:6403:-566.306,-46.8195,0	0/1:294:159,135:159:5609:135:4701:-334.755,0,-416.434	1/1:205:3,202:3:108:202:6918:-612.638,-51.636,0	0/1:160:111,48:111:3898:48:1671:-102.295,0,-302.794	1/1:66:1,65:1:36:65:2236:-197.906,-16.2697,0	0/1:167:103,64:103:3634:64:2160:-144.394,0,-276.997	1/1:201:8,193:8:284:193:6525:-561.464,-34.6037,0	0/1:67:42,24:42:1459:24:821:-54.0137,0,-111.412	0/1:151:102,49:102:3614:49:1642:-102.605,0,-280.012	1/1:88:1,87:1:27:87:2932:-261.423,-23.7909,0	0/1:70:54,16:54:1932:16:547:-28.4808,0,-153.084	0/1:155:118,36:118:4137:36:1254:-66.4425,0,-325.608	0/1:156:124,32:124:4388:32:1118:-53.9644,0,-348.133	1/1:109:1,108:1:32:108:3770:-336.304,-29.613,0	1/1:144:0,144:0:0:144:4938:-444.589,-43.3483,0
chr09	17188725	.	A	C	184012	PASS	AB=0.671912;ABP=2825.17;AC=63;AF=0.335106;AN=188;AO=7674;CIGAR=1X;DP=15033;DPB=15033;DPRA=2.10833;EPP=16666.9;EPPR=15982.9;GTI=15;LEN=1;MEANALT=1;MQM=59.9586;MQMR=59.9855;NS=94;NUMALT=1;ODDS=0.77434;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=271902;QR=263359;RO=7359;RPL=3762;RPP=9.37701;RPPR=15861.5;RPR=3912;RUN=1;SAF=3762;SAP=9.37701;SAR=3912;SRF=7345;SRP=15861.5;SRR=14;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:7,55:7:252:55:1956:-157.652,0,-4.3651	0/0:260:260,0:260:9320:0:0:0,-78.2678,-838.756	0/0:136:136,0:136:4880:0:0:0,-40.9401,-439.351	0/0:251:249,2:249:8935:2:72:0,-68.7218,-797.29	0/1:255:91,164:91:3256:164:5823:-447.424,0,-216.498	0/1:119:29,90:29:1027:90:3168:-249.522,0,-56.9196	0/0:75:74,1:74:2660:1:36:0,-18.979,-236.047	0/1:221:49,172:49:1760:172:6061:-478.904,0,-92.1562	0/1:99:24,75:24:829:75:2668:-210.562,0,-45.122	0/1:145:39,106:39:1392:106:3743:-293.419,0,-81.9297	0/1:154:47,107:47:1675:107:3792:-295.12,0,-104.678	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.338	0/1:155:45,110:45:1616:110:3878:-302.545,0,-99.0704	0/1:149:46,103:46:1648:103:3658:-284.572,0,-103.755	0/1:123:34,89:34:1220:89:3171:-248.587,0,-73.0801	0/1:132:39,93:39:1387:93:3289:-256.495,0,-85.3906	0/1:127:46,81:46:1652:81:2843:-217.878,0,-110.738	0/1:109:33,76:33:1176:76:2679:-208.542,0,-73.3355	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/1:416:138,278:138:4933:278:9854:-761.572,0,-318.891	0/1:225:61,164:61:2180:164:5809:-455.188,0,-128.734	0/1:324:99,225:99:3556:225:7984:-620.424,0,-222.713	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:135:60,75:60:2152:75:2660:-199.006,0,-153.308	0/0:49:46,3:46:1636:3:108:0,-4.6753,-137.454	0/1:536:185,351:185:6624:351:12447:-958.718,0,-434.869	0/1:387:113,274:113:4044:274:9724:-758.611,0,-247.649	0/1:55:24,31:24:843:31:1085:-81.4001,0,-59.6313	0/1:579:199,380:199:7132:380:13489:-1039.51,0,-467.64	0/1:185:67,118:67:2400:118:4179:-320.603,0,-160.566	0/1:167:53,114:53:1904:114:4075:-316.665,0,-121.366	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:28:15,13:15:536:13:464:-33.6687,0,-40.146	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	1/1:11:0,11:0:0:11:383:-34.8032,-3.31133,0	0/1:21:2,19:2:72:19:671:-54.3908,0,-0.515092	0/1:425:137,288:137:4890:288:10154:-785.867,0,-312.315	0/1:360:158,202:158:5652:202:7139:-534.2,0,-400.203	0/1:105:32,73:32:1140:73:2603:-202.91,0,-71.3011	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:180:171,9:171:6120:9:320:0,-25.043,-521.756	0/1:57:11,46:11:396:46:1639:-130.639,0,-18.824	0/1:469:155,314:155:5533:314:11025:-850.976,0,-356.912	0/1:143:58,85:58:2076:85:3019:-228.895,0,-144.063	0/1:141:53,88:53:1908:88:3133:-239.75,0,-129.544	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:246:88,158:88:3145:158:5589:-429.082,0,-209.221	0/0:266:264,2:264:9454:2:57:0,-74.6607,-845.405	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:361:82,279:82:2936:279:9940:-785.854,0,-155.802	0/0:139:138,1:138:4952:1:36:0,-38.2449,-442.23	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	0/0:140:139,1:139:4971:1:36:0,-38.5459,-443.94	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:21:7,14:7:248:14:495:-38.5614,0,-16.3426	0/1:288:79,209:79:2840:209:7398:-579.169,0,-169.141	0/1:22:11,11:11:396:11:388:-28.6323,0,-29.3601	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/1:24:4,20:4:144:20:716:-57.543,0,-6.0889	0/1:121:31,90:31:1112:90:3210:-252.693,0,-63.9667	0/1:211:63,148:63:2255:148:5278:-411.64,0,-139.695	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:339:117,222:117:4200:222:7896:-608.621,0,-276.131	0/1:349:137,212:137:4888:212:7523:-572.056,0,-335.011	0/1:136:55,81:55:1957:81:2867:-217.329,0,-135.458	0/0:139:139,0:139:4973:0:0:0,-41.8432,-447.717	0/1:300:93,207:93:3344:207:7304:-567.099,0,-210.867	1/1:248:14,234:14:496:234:8326:-704.377,-29.6812,0	0/0:22:21,1:21:747:1:36:0,-3.02438,-63.956	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:134:55,79:55:1964:79:2794:-211.361,0,-136.697	0/1:17:4,13:4:144:13:453:-35.9821,0,-8.19611	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.131	0/1:116:24,92:24:864:92:3255:-258.228,0,-43.1631	0/0:136:135,1:135:4828:1:36:0,-37.3418,-431.077	0/0:235:235,0:235:8399:0:0:0,-70.742,-755.916	0/1:406:161,245:161:5776:245:8696:-660.419,0,-397.734	0/0:183:179,4:179:6411:4:140:0,-42.1439,-564.132	0/1:25:11,14:11:396:14:483:-36.2715,0,-28.457	0/0:203:200,3:200:7159:3:104:0,-51.4063,-634.663	0/1:295:135,160:135:4823:160:5620:-417.12,0,-345.422	0/0:220:217,3:217:7748:3:108:0,-56.1514,-687.28	0/1:160:52,108:52:1859:108:3851:-298.586,0,-119.267	0/0:69:68,1:68:2429:1:36:0,-17.1728,-215.266	0/1:173:66,107:66:2359:107:3776:-287.963,0,-160.49	0/0:215:207,8:207:7353:8:284:0,-38.8181,-635.917	0/1:68:27,41:27:968:41:1440:-109.423,0,-66.9673	0/1:155:51,104:51:1828:104:3693:-285.913,0,-118.141	0/0:93:92,1:92:3300:1:36:0,-24.3975,-293.62	0/1:71:17,54:17:612:54:1940:-153.503,0,-34.0403	0/1:154:39,115:39:1400:115:4067:-319.669,0,-79.9406	0/1:156:33,123:33:1188:123:4370:-346.516,0,-60.267	0/0:114:113,1:113:4047:1:36:0,-30.7191,-360.818	0/0:150:150,0:150:5374:0:0:0,-45.1545,-483.79
chr09	17328855	.	AACC	TACG,AACG	172840	PASS	AB=0.496726,0.499305;ABP=3.47959,3.03142;AC=130,56;AF=0.698925,0.301075;AN=186;AO=5750,2523;CIGAR=1X2M1X,3M1X;DP=8307;DPB=8308.75;DPRA=0,1.1809;EPP=12480.3,5481.64;EPPR=6.91895;GTI=0;LEN=4,1;MEANALT=1.91398,2.27419;MQM=53.5243,58.6314;MQMR=55;NS=93;NUMALT=2;ODDS=1.1189;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=88,88;PQR=0;PRO=2;QA=202246,89795;QR=145;RO=5;RPL=18,5;RPP=12333.1,5438.29;RPPR=3.44459;RPR=5732,2518;RUN=1,1;SAF=19,5;SAP=12324.5,5438.29;SAR=5731,2518;SRF=4;SRP=6.91895;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20,0:0:0:20,0:688,0:-62.1825,-6.0206,0,-62.1825,-6.0206,-62.1825	1/1:221:0,220,1:0:0:220,1:7716,36:-692.238,-66.2266,0,-689.302,-62.9311,-689.001	1/1:128:0,128,0:0:0:128,0:4503,0:-404.382,-38.5318,0,-404.382,-38.5318,-404.382	1/1:162:0,158,2:0:0:158,2:5544,72:-495.936,-47.5627,0,-490.061,-41.6604,-489.459	1/2:75:0,51,23:0:0:51,23:1771,820:-210.606,-66.8281,-51.4756,-143.772,0,-136.849	1/2:49:0,14,34:0:0:14,34:477,1200:-136.315,-97.6601,-93.4457,-38.6409,0,-28.4059	1/1:98:0,98,0:0:0:98,0:3421,0:-306.392,-29.5009,0,-306.392,-29.5009,-306.392	1/2:147:0,76,71:0:0:76,71:2671,2535:-423.115,-206.089,-183.211,-217.379,0,-196.005	1/2:86:1,45,38:1:25:45,38:1557,1331:-232.408,-106.309,-94.7032,-124.51,0,-115.011	1/2:107:0,69,38:0:0:69,38:2424,1346:-306.809,-109.993,-89.2219,-197.169,0,-185.73	1/2:47:0,25,22:0:0:25,22:890,760:-134.457,-62.0771,-54.5513,-72.7295,0,-66.1068	1/1:76:0,76,0:0:0:76,0:2661,0:-239.214,-22.8783,0,-239.214,-22.8783,-239.214	1/2:73:1,35,37:1:30:35,37:1226,1320:-204.495,-105.172,-97.0331,-97.2782,0,-88.5373	1/2:69:0,33,36:0:0:33,36:1166,1296:-200.889,-106.072,-96.1378,-95.1729,0,-84.3359	1/2:72:0,39,33:0:0:39,33:1402,1176:-210.344,-96.2109,-84.4707,-114.491,0,-104.557	1/2:45:0,24,21:0:0:24,21:838,739:-128.343,-60.5,-53.2753,-68.1932,0,-61.8716	1/2:84:0,46,37:0:0:46,37:1630,1328:-240.908,-108.265,-94.4173,-132.64,0,-121.502	1/2:69:0,33,36:0:0:33,36:1153,1288:-198.152,-105.31,-95.3761,-93.1937,0,-82.3567	1/1:31:0,31,0:0:0:31,0:1095,0:-98.7619,-9.33193,0,-98.7619,-9.33193,-98.7619	1/2:193:1,97,95:1:24:97,95:3426,3368:-550.023,-272.496,-245.153,-276.083,0,-249.342	1/2:111:0,56,55:0:0:56,55:1943,1935:-315.478,-157.77,-140.913,-158.056,0,-141.5	1/2:70:0,26,44:0:0:26,44:924,1564:-203.004,-127.8,-119.973,-75.5593,0,-62.314	1/1:75:0,75,0:0:0:75,0:2666,0:-239.683,-22.5773,0,-239.683,-22.5773,-239.683	1/2:130:0,54,76:0:0:54,76:1894,2701:-374.321,-220.41,-204.154,-154.264,0,-131.386	1/1:34:0,34,0:0:0:34,0:1205,0:-108,-10.235,0,-108,-10.235,-108	1/2:293:0,147,145:0:0:147,145:5188,5159:-842.063,-420.542,-376.291,-421.645,0,-377.996	1/2:169:0,82,87:0:0:82,87:2840,3103:-483.031,-253.084,-228.4,-230.297,0,-204.108	1/2:51:0,33,18:0:0:33,18:1149,644:-146.013,-52.8327,-42.8987,-93.534,0,-88.1155	1/2:157:0,80,77:0:0:80,77:2837,2772:-457.297,-226.534,-202.452,-231.12,0,-207.941	1/2:93:0,59,34:0:0:59,34:2077,1208:-267.623,-98.7767,-81.0159,-169.2,0,-158.965	1/2:130:0,52,78:0:0:52,78:1829,2787:-375.978,-227.574,-211.921,-148.757,0,-125.277	1/1:1:0,1,0:0:0:1,0:36,0:-3.59317,-0.30103,0,-3.59317,-0.30103,-3.59317	1/1:3:0,3,0:0:0:3,0:108,0:-10.0609,-0.90309,0,-10.0609,-0.90309,-10.0609	1/1:6:0,6,0:0:0:6,0:212,0:-19.4064,-1.80618,0,-19.4064,-1.80618,-19.4064	1/2:3:0,2,1:0:0:2,1:69,36:-8.8645,-3.2724,-2.67034,-5.94519,0,-5.64416	.:.:.:.:.:.:.:.	1/2:205:0,100,104:0:0:100,104:3524,3708:-588.786,-302.254,-272.151,-286.537,0,-255.23	1/2:137:0,59,76:0:0:59,76:2094,2712:-391.487,-221.138,-203.377,-170.439,0,-147.56	1/2:40:0,23,17:0:0:23,17:813,612:-115.696,-49.7117,-42.788,-66.3387,0,-61.2212	1/1:2:0,2,0:0:0:2,0:69,0:-6.54592,-0.60206,0,-6.54592,-0.60206,-6.54592	1/1:165:0,165,0:0:0:165,0:5811,0:-520.71,-49.67,0,-520.71,-49.67,-520.71	1/1:37:0,37,0:0:0:37,0:1323,0:-119.022,-11.1381,0,-119.022,-11.1381,-119.022	1/2:132:0,75,56:0:0:75,56:2629,2007:-376.985,-163.673,-141.096,-213.327,0,-196.469	1/2:95:0,44,50:0:0:44,50:1550,1775:-270.623,-144.692,-131.447,-126.011,0,-110.96	1/2:98:0,47,50:0:0:47,50:1661,1792:-280.233,-146.137,-131.988,-134.091,0,-119.04	1/1:59:0,57,1:0:0:57,1:1989,36:-178.563,-17.1587,0,-175.625,-14.2208,-175.324	1/2:131:0,61,70:0:0:61,70:2173,2433:-374.955,-198.03,-179.667,-177.277,0,-156.205	1/1:130:0,130,0:0:0:130,0:4528,0:-406.881,-39.1339,0,-406.881,-39.1339,-406.881	1/1:104:0,104,0:0:0:104,0:3630,0:-325.429,-31.3071,0,-325.429,-31.3071,-325.429	1/2:128:0,60,68:0:0:60,68:2122,2431:-370.901,-198.563,-180.502,-172.692,0,-152.222	1/1:116:0,115,1:0:0:115,1:4056,36:-364.303,-34.6185,0,-361.365,-31.3212,-361.064	1/2:7:0,4,3:0:0:4,3:144,108:-20.8967,-9.17208,-7.96796,-12.0841,0,-11.1811	1/1:86:0,86,0:0:0:86,0:3067,0:-275.646,-25.8886,0,-275.646,-25.8886,-275.646	1/1:79:0,79,0:0:0:79,0:2819,0:-253.619,-23.7814,0,-253.619,-23.7814,-253.619	1/2:8:0,5,3:0:0:5,3:180,108:-23.8284,-9.15788,-7.65273,-15.0299,0,-14.1268	1/2:89:0,35,53:0:0:35,53:1216,1876:-251.455,-152.777,-142.241,-98.668,0,-82.7134	1/2:40:1,24,15:1:30:24,15:852,540:-110.693,-41.7155,-36.8857,-66.9377,0,-64.8187	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chr09	17470754	.	A	T	45341.4	PASS	AB=0.48741;ABP=10.6651;AC=57;AF=0.303191;AN=188;AO=2726;CIGAR=1X;DP=8968;DPB=8968;DPRA=1.22358;EPP=5922.44;EPPR=13555.2;GTI=0;LEN=1;MEANALT=1.01562;MQM=59.9875;MQMR=59.9963;NS=94;NUMALT=1;ODDS=0.582302;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97476;QR=223129;RO=6241;RPL=0;RPP=5922.44;RPPR=13555.2;RPR=2726;RUN=1;SAF=2726;SAP=5922.44;SAR=0;SRF=6241;SRP=13555.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:26,28:26:936:28:996:-73.6993,0,-68.3038	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/0:287:287,0:287:10292:0:0:0,-86.3956,-926.202	0/0:151:151,0:151:5390:0:0:0,-45.4555,-485.229	0/1:105:59,46:59:2101:46:1643:-116.55,0,-157.75	0/1:42:18,24:18:648:24:856:-64.7178,0,-46.0086	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:170:82,88:82:2925:88:3141:-231.739,0,-212.308	0/1:103:30,73:30:1080:73:2585:-201.833,0,-66.5072	0/1:87:58,29:58:2084:29:1044:-68.0852,0,-161.64	0/1:48:28,20:28:1004:20:701:-48.9623,0,-76.2264	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/1:85:38,47:38:1368:47:1680:-125.9,0,-97.8333	0/1:43:23,20:23:820:20:712:-51.4624,0,-61.1782	0/1:78:36,42:36:1292:42:1508:-112.534,0,-93.1034	0/1:62:36,26:36:1296:26:936:-65.8956,0,-98.2801	0/1:33:14,19:14:504:19:684:-51.9563,0,-35.7641	0/1:22:8,14:8:269:14:504:-39.0754,0,-17.9135	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:222:143,79:143:5108:79:2801:-185.501,0,-393.036	0/1:148:75,73:75:2696:73:2616:-191.135,0,-198.331	0/1:94:36,58:36:1292:58:2084:-159.533,0,-88.2869	0/0:147:147,0:147:5234:0:0:0,-44.2514,-471.197	0/1:77:24,53:24:860:53:1889:-147.107,0,-54.5425	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:294:173,121:173:6189:121:4332:-301.544,0,-468.603	0/1:298:142,156:142:5096:156:5547:-409.646,0,-369.075	0/1:37:22,15:22:757:15:540:-37.7984,0,-57.3079	0/1:313:175,138:175:6249:138:4944:-350.887,0,-468.283	0/1:84:50,34:50:1792:34:1220:-84.8203,0,-136.276	0/1:133:55,78:55:1976:78:2796:-211.843,0,-138.078	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:151:84,67:84:3020:67:2395:-170.351,0,-226.574	0/1:135:65,70:65:2313:70:2508:-185.333,0,-167.79	0/1:44:22,22:22:792:22:792:-58.3604,0,-58.3604	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:93:92,1:92:3266:1:36:0,-24.3975,-290.56	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:275:154,121:154:5509:121:4336:-307.632,0,-413.151	0/1:61:39,22:39:1400:22:792:-53.2428,0,-107.936	0/1:73:29,44:29:1040:44:1571:-119.706,0,-71.9392	0/0:132:131,1:131:4674:1:36:0,-36.1377,-417.221	0/1:184:75,108:75:2688:108:3880:-293.945,0,-186.716	0/0:144:143,1:143:5083:1:36:0,-39.75,-454.014	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:80:36,44:36:1288:44:1582:-118.589,0,-92.1412	0/0:111:111,0:111:3950:0:0:0,-33.4143,-355.69	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:200:200,0:200:7160:0:0:0,-60.206,-644.457	0/0:62:62,0:62:2196:0:0:0,-18.6639,-197.903	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:192:112,80:112:4000:80:2864:-200.2,0,-302.393	0/1:77:44,33:44:1576:33:1184:-83.689,0,-118.952	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:88:45,43:45:1612:43:1517:-110.33,0,-118.879	0/1:72:46,26:46:1633:26:932:-62.5247,0,-125.583	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:154:100,54:100:3554:54:1931:-127.707,0,-273.708	0/1:215:134,81:134:4800:81:2908:-197.234,0,-367.434	0/1:46:23,23:23:820:23:809:-59.2809,0,-60.2751	0/0:108:106,2:106:3778:2:72:0,-25.6745,-333.38	0/1:168:81,87:81:2870:87:3108:-229.375,0,-207.962	0/1:191:78,113:78:2804:113:4052:-307.37,0,-195.102	0/0:29:29,0:29:1021:0:0:0,-8.72987,-92.2003	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:40:17,23:17:612:23:808:-60.9975,0,-43.3722	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:80:37,43:37:1290:43:1536:-114.451,0,-92.3145	0/0:133:131,2:131:4685:2:72:0,-33.2003,-414.973	0/0:200:198,2:198:7074:2:72:0,-53.3693,-629.882	0/1:120:53,67:53:1893:67:2396:-179.774,0,-134.523	0/0:114:107,7:107:3821:7:252:0,-11.2885,-321.057	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:111:111,0:111:3965:0:0:0,-33.4143,-357.04	0/1:135:62,73:62:2217:73:2624:-195.768,0,-159.154	0/0:219:219,0:219:7833:0:0:0,-65.9256,-704.997	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:65:65,0:65:2313:0:0:0,-19.5669,-208.322	0/1:39:14,25:14:496:25:892:-68.8595,0,-33.2341	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/1:26:10,16:10:356:16:576:-44.3482,0,-24.5545	0/1:73:37,36:37:1332:36:1288:-94.2484,0,-98.2072	0/0:71:71,0:71:2526:0:0:0,-21.3731,-227.588	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:80:43,37:43:1544:37:1321:-95.1084,0,-115.171	0/1:83:33,50:33:1188:50:1783:-135.767,0,-82.2431	0/0:148:148,0:148:5274:0:0:0,-44.5524,-474.795	0/0:121:121,0:121:4352:0:0:0,-36.4246,-391.853
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chr09	17486761	.	A	G	44619.1	PASS	AB=0.621475;ABP=521.071;AC=58;AF=0.308511;AN=188;AO=2520;CIGAR=1X;DP=5978;DPB=5978;DPRA=1.32371;EPP=5475.12;EPPR=7507.62;GTI=5;LEN=1;MEANALT=1.03175;MQM=59.9754;MQMR=59.9983;NS=94;NUMALT=1;ODDS=1.47454;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89902;QR=123733;RO=3456;RPL=2520;RPP=5475.12;RPPR=7507.62;RPR=0;RUN=1;SAF=0;SAP=5475.12;SAR=2520;SRF=0;SRP=7507.62;SRR=3456;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:6,32:6:216:32:1148:-92.1907,0,-8.35137	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:115:114,1:114:4065:1:36:0,-31.0202,-362.438	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:47:16,31:16:576:31:1104:-85.5222,0,-38.0266	0/1:40:21,19:21:752:19:672:-48.7656,0,-55.9651	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/1:98:29,69:29:1040:69:2472:-193.147,0,-64.4134	0/1:57:23,34:23:820:34:1208:-91.8674,0,-56.9638	0/1:56:18,38:18:648:38:1356:-105.483,0,-41.7942	0/1:79:53,26:53:1881:26:913:-58.7026,0,-145.785	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511	0/1:84:40,44:40:1436:44:1576:-116.845,0,-104.251	0/1:78:54,24:54:1920:24:860:-54.2415,0,-149.597	0/1:77:32,45:32:1152:45:1616:-122.551,0,-80.8108	0/1:67:31,36:31:1116:36:1285:-95.7833,0,-80.5827	0/1:41:22,19:22:788:19:680:-48.8673,0,-58.9026	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:101:38,63:38:1368:63:2256:-172.899,0,-93.0168	0/1:111:38,73:38:1368:73:2584:-199.396,0,-90.0065	0/1:78:15,63:15:536:63:2252:-179.463,0,-25.0945	0/0:33:31,2:31:1097:2:72:0,-3.09727,-92.2013	0/1:30:8,22:8:288:22:780:-61.492,0,-17.2365	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/1:112:36,76:36:1284:76:2722:-211.508,0,-82.1481	0/1:185:74,110:74:2652:110:3928:-297.964,0,-183.177	0/1:35:15,20:15:540:20:720:-54.5927,0,-38.4005	0/1:169:45,124:45:1612:124:4431:-348.088,0,-94.496	0/1:78:34,44:34:1216:44:1576:-118.651,0,-86.2662	0/1:80:16,64:16:572:64:2288:-182.099,0,-27.731	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:8:7,1:7:244:1:36:-1.19004,0,-19.8912	0/1:164:65,99:65:2320:99:3552:-270.511,0,-159.692	0/1:67:23,44:23:824:44:1555:-120.07,0,-54.3143	0/1:69:40,29:40:1436:29:1021:-71.43,0,-108.767	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:68:67,1:67:2392:1:36:0,-16.8718,-211.939	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/1:88:41,47:41:1464:47:1688:-125.716,0,-105.565	0/1:62:27,35:27:960:35:1252:-94.3212,0,-68.0524	0/1:64:22,42:22:792:42:1493:-115.397,0,-52.3398	0/0:30:29,1:29:1036:1:36:0,-5.43262,-89.9556	0/1:72:18,54:18:648:54:1914:-150.862,0,-36.9777	0/0:70:67,3:67:2400:3:108:0,-10.9969,-206.182	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:85:30,55:30:1080:55:1976:-152.527,0,-71.9257	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:102:31,70:31:1116:70:2480:-192.691,0,-69.9878	0/1:45:9,36:9:324:36:1284:-102.315,0,-15.9595	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:67:20,47:20:716:47:1672:-130.598,0,-44.5987	0/1:106:44,62:44:1576:62:2216:-167.796,0,-110.222	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:76:17,59:17:608:59:2090:-165.489,0,-32.1737	0/1:95:28,67:28:1004:67:2400:-187.659,0,-62.078	0/1:42:19,23:19:680:23:824:-61.8401,0,-48.8859	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:96:27,69:27:964:69:2449:-191.765,0,-58.1779	0/1:134:26,108:26:936:108:3860:-307.258,0,-44.2214	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:32:32,0:32:1117:0:0:0,-9.63296,-100.835	0/1:55:23,32:23:824:32:1132:-85.6314,0,-57.9267	0/1:15:8,7:8:288:7:248:-18.1487,0,-21.752	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:85:19,66:19:680:66:2348:-185.992,0,-35.9416	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.989	0/1:106:41,65:41:1468:65:2332:-178.23,0,-100.507	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:95:28,67:28:1000:67:2404:-188.019,0,-61.7175	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/1:47:20,27:20:720:27:960:-72.5679,0,-50.9804	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.109	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/1:83:46,37:46:1652:37:1316:-93.7558,0,-123.983	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/1:60:34,26:34:1212:26:924:-65.4153,0,-91.3245	0/1:130:75,55:75:2692:55:1963:-137.811,0,-203.39	0/1:80:26,54:26:932:54:1898:-147.012,0,-60.1165	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:90:90,0:90:3227:0:0:0,-27.0927,-290.651
chr09	17501487	.	G	A	5.73555e-10	PASS	AB=0.357241;ABP=131.349;AC=17;AF=0.0904255;AN=188;AO=787;CIGAR=1X;DP=4942;DPB=4942;DPRA=1.03132;EPP=1711.96;EPPR=9014.62;GTI=15;LEN=1;MEANALT=1.01754;MQM=10.8335;MQMR=10.7285;NS=94;NUMALT=1;ODDS=22.7514;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27974;QR=148542;RO=4154;RPL=0;RPP=1711.96;RPPR=9014.62;RPR=787;RUN=1;SAF=787;SAP=1711.96;SAR=0;SRF=4154;SRP=9023.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:30,9:30:1065:9:320:0,-0.816664,-20.8966	0/0:43:43,0:43:1548:0:0:0,-12.9443,-41.9112	0/0:99:99,0:99:3511:0:0:0,-29.802,-100.56	0/0:85:85,0:85:3048:0:0:0,-25.5875,-77.239	0/0:14:11,3:11:388:3:104:0,-1.2324,-9.82259	0/1:25:16,9:16:560:9:305:-1.35762,0,-8.48887	0/0:54:54,0:54:1940:0:0:0,-16.2556,-48.8308	0/0:43:35,8:35:1260:8:288:0,-4.92351,-26.7892	0/0:62:45,17:45:1593:17:592:0,-2.02253,-27.9288	0/0:58:47,11:47:1673:11:380:0,-7.38465,-34.6236	0/0:34:24,10:24:864:10:360:0,-1.0532,-13.4885	0/0:83:83,0:83:2963:0:0:0,-24.9855,-81.452	0/1:53:35,18:35:1260:18:644:-1.86281,0,-19.0353	0/0:33:23,10:23:824:10:356:0,-0.027952,-13.1264	0/1:61:39,22:39:1387:22:780:-1.69404,0,-18.5922	0/0:31:25,6:25:896:6:216:0,-3.28887,-18.8762	0/0:29:23,6:23:824:6:216:0,-2.68681,-16.7187	0/0:17:16,1:16:572:1:36:0,-4.01877,-15.0118	0/0:4:4,0:4:144:0:0:0,-1.20412,-4.06533	0/0:72:54,18:54:1921:18:629:0,-0.620293,-28.5579	0/0:90:67,23:67:2381:23:813:0,-2.28249,-42.18	0/1:56:36,20:36:1277:20:708:-1.3108,0,-17.0233	0/0:55:54,1:54:1944:1:36:0,-15.5576,-47.6532	0/0:42:30,12:30:1072:12:417:0,-0.881768,-18.0108	0/0:53:53,0:53:1896:0:0:0,-15.9546,-54.4091	0/0:147:113,34:113:4051:34:1205:0,-13.339,-74.3723	0/0:137:119,18:119:4265:18:644:0,-23.3334,-99.5789	0/0:29:22,7:22:792:7:248:0,-1.79086,-15.5565	0/1:107:68,39:68:2425:39:1392:-2.95127,0,-30.529	0/1:68:46,22:46:1652:22:792:-3.56097,0,-24.6764	0/0:61:45,16:45:1608:16:576:0,-3.87705,-27.5995	0/0:5:5,0:5:180:0:0:0,-1.50515,-5.05419	0/1:11:7,4:7:252:4:140:-0.660001,0,-3.72059	0/0:9:9,0:9:320:0:0:0,-2.70927,-8.91745	0/0:11:9,2:9:324:2:72:0,-1.22373,-7.01283	0/0:9:9,0:9:324:0:0:0,-2.70927,-9.00965	0/0:190:148,42:148:5308:42:1496:0,-19.1582,-100.869	0/1:72:42,30:42:1489:30:1072:-7.6478,0,-20.1809	0/0:44:38,6:38:1364:6:216:0,-7.29367,-32.2725	0/0:7:7,0:7:248:0:0:0,-2.10721,-7.03018	0/0:57:57,0:57:2025:0:0:0,-17.1587,-56.2562	0/0:29:29,0:29:1040:0:0:0,-8.72987,-28.605	0/0:65:47,18:47:1684:18:644:0,-1.74955,-29.8303	0/0:29:22,7:22:784:7:252:0,-2.33615,-14.8364	0/1:49:30,19:30:1080:19:684:-2.6132,0,-14.2141	0/0:99:99,0:99:3548:0:0:0,-29.802,-89.197	0/0:40:28,12:28:996:12:432:0,-0.155538,-15.8175	0/0:78:78,0:78:2785:0:0:0,-23.4803,-73.2563	0/0:48:48,0:48:1724:0:0:0,-14.4494,-43.3462	0/0:41:34,7:34:1224:7:252:0,-5.76616,-24.9942	0/0:82:82,0:82:2940:0:0:0,-24.6845,-75.9875	0/0:3:3,0:3:108:0:0:0,-0.90309,-2.89032	0/0:70:70,0:70:2516:0:0:0,-21.0721,-69.1488	0/0:36:36,0:36:1296:0:0:0,-10.8371,-32.4681	0/1:21:14,7:14:504:7:237:-0.676478,0,-7.36096	0/0:66:52,14:52:1838:14:500:0,-5.91574,-37.6565	0/0:31:21,10:21:752:10:345:0,-0.176507,-10.2753	0/0:5:5,0:5:176:0:0:0,-1.50515,-4.59413	0/0:6:5,1:5:180:1:36:0,-0.807161,-3.77995	0/0:46:36,10:36:1268:10:356:0,-3.94134,-28.0393	0/0:95:75,20:75:2692:20:712:0,-8.16595,-49.9748	0/0:5:5,0:5:180:0:0:0,-1.50515,-4.59549	0/0:86:69,16:69:2457:16:572:0,-11.203,-49.6915	0/0:70:55,15:55:1976:15:532:0,-7.12692,-37.2235	0/1:46:32,14:32:1148:14:496:-0.0126786,0,-17.7243	0/0:26:26,0:26:932:0:0:0,-7.82678,-23.5657	0/0:108:81,27:81:2904:27:945:0,-8.16539,-50.5557	0/0:104:71,33:71:2548:33:1173:0,-1.47969,-37.7026	0/0:23:23,0:23:816:0:0:0,-6.92369,-22.4882	0/0:49:49,0:49:1760:0:0:0,-14.7505,-48.5625	0/0:53:38,15:38:1360:15:540:0,-2.36793,-22.027	0/1:8:5,3:5:180:3:108:-0.389014,0,-2.27899	0/0:93:93,0:93:3340:0:0:0,-27.9958,-91.5316	0/0:43:30,13:30:1049:13:468:0,-0.250727,-17.0419	0/0:61:61,0:61:2196:0:0:0,-18.3628,-59.8012	0/0:87:87,0:87:3086:0:0:0,-26.1896,-78.6249	0/0:30:22,8:22:780:8:288:0,-1.28309,-14.0217	0/0:38:38,0:38:1364:0:0:0,-11.4391,-37.415	1/1:8:1,7:1:36:7:252:-5.93318,-1.3095,0	0/0:53:53,0:53:1908:0:0:0,-15.9546,-52.2499	0/0:32:24,8:24:856:8:284:0,-1.7049,-15.641	0/0:128:128,0:128:4558:0:0:0,-38.5318,-115.57	0/0:56:56,0:56:1996:0:0:0,-16.8577,-51.6121	0/0:41:41,0:41:1468:0:0:0,-12.3422,-38.2209	0/0:29:23,6:23:815:6:212:0,-3.23662,-16.8997	0/0:99:99,0:99:3545:0:0:0,-29.802,-92.595	0/0:26:22,4:22:792:4:129:0,-3.79566,-18.2844	0/0:62:45,17:45:1616:17:608:0,-1.83536,-28.3178	0/0:57:57,0:57:2044:0:0:0,-17.1587,-56.2019	0/1:20:13,7:13:464:7:244:-1.00784,0,-7.12319	0/1:85:58,27:58:2084:27:972:-1.04142,0,-32.3239	0/1:43:25,18:25:900:18:648:-3.52033,0,-11.7966	0/0:52:52,0:52:1842:0:0:0,-15.6536,-48.7691	0/0:83:83,0:83:2969:0:0:0,-24.9855,-76.7955
chr09	17501494	.	CCG	CCA	384.865	PASS	AB=0.428378;ABP=101.924;AC=46;AF=0.244681;AN=188;AO=1552;CIGAR=2M1X;DP=4971;DPB=4971;DPRA=7.84603;EPP=132.314;EPPR=821.177;GTI=39;LEN=1;MEANALT=1.11111;MQM=10.6559;MQMR=10.8001;NS=94;NUMALT=1;ODDS=0.114983;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55526;QR=119641;RO=3407;RPL=624;RPP=132.314;RPPR=821.177;RPR=928;RUN=1;SAF=1552;SAP=3373.14;SAR=0;SRF=3407;SRP=7401.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:29,10:29:1024:10:360:0,-1.74166,-20.5905	0/0:41:30,11:30:1053:11:396:0,-1.62681,-18.7758	0/1:99:67,32:67:2359:32:1148:-1.85977,0,-42.1282	0/1:84:40,44:40:1393:44:1572:-14.6401,0,-11.099	0/0:14:12,2:12:430:2:72:0,-2.12682,-11.9772	0/1:25:17,8:17:593:8:284:-0.493299,0,-9.37522	0/1:55:34,20:34:1196:20:708:-1.81255,0,-16.0241	0/0:42:31,11:31:1101:11:392:0,-1.65761,-19.9536	0/0:63:52,11:52:1810:11:396:0,-7.97751,-40.2295	0/0:58:42,16:42:1463:16:568:0,-0.532628,-22.1371	0/1:35:23,12:23:796:12:424:-0.712884,0,-10.9324	0/1:81:39,42:39:1324:42:1496:-16.9823,0,-13.9252	0/0:53:42,11:42:1488:11:396:0,-4.96721,-30.8193	0/0:34:31,3:31:1091:3:108:0,-7.25162,-27.9524	0/0:60:41,19:41:1438:19:684:0,-0.698125,-21.3762	0/1:32:20,12:20:700:12:417:-2.30969,0,-10.3306	0/1:30:20,10:20:695:10:360:-0.876869,0,-10.9295	0/1:18:11,7:11:388:7:252:-1.43104,0,-5.83288	1/1:4:1,3:1:36:3:108:-1.97773,-0.105382,0	0/0:72:50,22:50:1734:22:792:0,-1.70348,-29.9244	0/0:91:67,24:67:2344:24:864:0,-1.38129,-41.5688	0/0:56:44,11:44:1545:11:392:0,-6.48389,-30.8178	0/1:55:36,19:36:1271:19:684:-0.626482,0,-15.8997	0/0:41:30,11:30:1027:11:392:0,-1.266,-18.4556	0/1:52:23,29:23:806:29:1040:-15.2097,0,-7.01007	0/0:150:119,31:119:4170:31:1104:0,-17.186,-82.9019	0/0:143:103,40:103:3635:40:1436:0,-3.65457,-62.3891	0/0:29:24,5:24:831:5:180:0,-3.67568,-19.3022	0/0:109:81,28:81:2832:28:1004:0,-7.53842,-49.2042	0/0:70:58,12:58:2054:12:432:0,-9.18644,-47.1862	0/0:60:54,6:54:1879:6:216:0,-12.5672,-44.6354	0/1:5:3,2:3:108:2:72:-0.582451,0,-1.57132	0/0:10:8,2:8:286:2:72:0,-0.922698,-5.93251	0/0:9:9,0:9:322:0:0:0,-2.70927,-8.91827	0/1:11:5,6:5:180:6:212:-2.82084,0,-1.74286	0/0:9:8,1:8:282:1:36:0,-1.61053,-6.92003	0/0:191:135,56:135:4758:56:2000:0,-5.61318,-74.2074	0/0:73:65,8:65:2275:8:288:0,-14.0454,-56.3026	0/1:44:27,17:27:947:17:612:-3.67524,0,-13.9938	0/1:7:4,3:4:144:3:108:-0.969255,0,-1.95812	0/1:57:26,31:26:922:31:1108:-13.6024,0,-8.47632	0/1:29:13,16:13:461:16:568:-7.01802,0,-4.23276	0/1:68:47,21:47:1667:21:752:-0.404254,0,-27.0784	0/1:28:18,10:18:619:10:356:-0.66089,0,-9.06799	0/0:49:41,8:41:1450:8:288:0,-7.36664,-31.5445	0/1:98:65,33:65:2306:33:1180:-0.267166,0,-29.1166	0/0:40:35,5:35:1247:5:176:0,-6.98876,-29.4832	0/1:79:48,31:48:1694:31:1108:-6.4474,0,-19.91	0/1:50:28,22:28:976:22:792:-5.00938,0,-10.2076	0/0:40:30,10:30:1071:10:352:0,-2.86246,-18.7924	0/1:81:46,34:46:1608:34:1216:-6.66498,0,-18.881	0/0:3:3,0:3:108:0:0:0,-0.90309,-2.89032	0/0:73:52,21:52:1831:21:752:0,-1.1009,-30.4453	0/1:36:23,13:23:820:13:468:-0.951348,0,-9.94024	0/0:21:15,3:15:535:3:108:0,-2.44688,-11.8679	0/0:67:53,14:53:1851:14:504:0,-6.39596,-39.0679	0/1:31:20,11:20:708:11:392:-0.747572,0,-9.19435	0/0:5:4,1:4:133:1:36:0,-0.506131,-2.69058	0/1:6:3,3:3:106:3:108:-0.991074,0,-1.17668	0/1:45:28,16:28:992:16:568:-2.36639,0,-14.1298	0/0:93:68,25:68:2406:25:896:0,-5.41929,-43.152	0/1:5:2,3:2:70:3:108:-1.2921,0,-0.392443	0/0:87:64,23:64:2237:23:828:0,-5.41001,-39.0507	0/0:72:51,21:51:1778:21:752:0,-2.60391,-28.8098	0/0:47:42,4:42:1498:4:135:0,-9.9819,-37.4915	0/1:26:13,12:13:465:12:432:-3.35417,0,-4.16189	0/0:110:89,21:89:3148:21:756:0,-14.1319,-63.2775	0/0:104:95,9:95:3348:9:324:0,-23.1152,-80.9718	0/1:23:15,8:15:530:8:288:-1.0061,0,-7.74122	0/1:49:30,19:30:1074:19:676:-4.14437,0,-15.0233	0/0:54:46,8:46:1624:8:288:0,-6.23164,-32.409	0/0:8:8,0:8:277:0:0:0,-2.40824,-7.3754	0/1:92:59,32:59:2047:32:1143:-4.16173,0,-30.5001	0/0:43:30,13:30:1052:13:460:0,-0.0731521,-16.7041	0/1:60:35,25:35:1225:25:887:-6.48968,0,-16.2736	0/1:86:52,33:52:1845:33:1184:-4.4422,0,-21.1567	0/0:31:27,4:27:926:4:144:0,-5.2666,-22.2376	0/1:40:27,13:27:948:13:460:-0.829938,0,-14.4867	0/0:8:8,0:8:288:0:0:0,-2.40824,-8.02078	0/1:52:32,20:32:1119:20:716:-4.23187,0,-15.8063	0/0:33:26,7:26:896:7:248:0,-2.99498,-18.5623	0/1:131:73,58:73:2544:58:2083:-12.9921,0,-26.6132	0/1:57:26,30:26:899:30:1076:-11.2857,0,-6.50405	0/1:40:18,22:18:628:22:765:-8.8999,0,-4.32138	0/0:28:22,6:22:788:6:216:0,-2.5686,-15.2817	0/1:100:43,57:43:1519:57:2044:-22.2331,0,-11.1735	0/1:26:15,11:15:536:11:392:-3.15887,0,-7.56625	0/0:63:44,19:44:1524:19:684:0,-0.0666032,-25.1304	0/1:57:24,33:24:833:33:1184:-15.4019,0,-6.57026	0/0:21:19,2:19:668:2:72:0,-4.23403,-18.4378	0/0:87:68,19:68:2380:19:684:0,-7.29132,-48.653	0/0:43:39,4:39:1386:4:144:0,-8.9712,-33.2541	0/1:53:23,30:23:807:30:1076:-12.7276,0,-5.17631	0/1:82:41,41:41:1415:41:1472:-13.0878,0,-12.518
chr09	17503656	.	A	G	324133	PASS	AB=0.48714;ABP=20.8262;AC=129;AF=0.68617;AN=188;AO=14280;CIGAR=1X;DP=20671;DPB=20671;DPRA=0;EPP=30968.2;EPPR=13841.8;GTI=1;LEN=1;MEANALT=1.04255;MQM=43.4803;MQMR=22.1698;NS=94;NUMALT=1;ODDS=4.82577;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=508353;QR=228292;RO=6385;RPL=6633;RPP=159.362;RPPR=15.4171;RPR=7647;RUN=1;SAF=6638;SAP=156.293;SAR=7642;SRF=3100;SRP=14.6499;SRR=3285;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:137:65,71:65:2336:71:2532:-165.329,0,-66.8829	1/1:262:0,262:0:0:262:9330:-732.311,-78.8699,0	1/1:330:0,330:0:0:330:11727:-949.279,-99.3399,0	1/1:538:1,537:1:36:537:19131:-1534.77,-159.133,0	0/1:214:114,100:114:4092:100:3583:-210.201,0,-170.423	0/1:109:57,52:57:2044:52:1855:-116.891,0,-56.4727	1/1:234:2,232:2:72:232:8261:-660.022,-65.081,0	0/1:359:164,195:164:5845:195:6946:-432.18,0,-214.843	0/1:262:132,129:132:4704:129:4582:-294.295,0,-155.878	0/1:227:128,96:128:4544:96:3411:-198.608,0,-205.528	0/1:144:78,66:78:2788:66:2324:-147.122,0,-97.0306	1/1:218:0,218:0:0:218:7753:-634.678,-65.6245,0	0/1:171:86,85:86:3088:85:3034:-193.751,0,-90.2417	0/1:173:84,89:84:3007:89:3174:-207.724,0,-73.3938	0/1:139:66,73:66:2355:73:2604:-167.741,0,-90.2698	0/1:144:78,66:78:2800:66:2345:-148.653,0,-90.9994	0/1:152:77,75:77:2764:75:2683:-162.023,0,-101.023	0/1:129:55,74:55:1968:74:2648:-168.643,0,-68.167	1/1:113:0,113:0:0:113:4008:-333.542,-34.0164,0	0/1:314:175,139:175:6260:139:4967:-296.226,0,-270.215	0/1:367:209,158:209:7484:158:5631:-330.865,0,-272.954	0/1:161:109,52:109:3901:52:1851:-101.455,0,-187.7	1/1:216:0,216:0:0:216:7735:-647.558,-65.0225,0	0/1:218:107,111:107:3805:111:3941:-232.007,0,-148.705	1/1:182:4,178:4:144:178:6357:-512.33,-50.3534,0	0/1:552:257,295:257:9190:295:10504:-635.033,0,-417.721	0/1:535:266,269:266:9487:269:9524:-605.83,0,-320.95	0/1:97:45,52:45:1616:52:1855:-115.286,0,-51.1525	0/1:488:208,280:208:7398:280:10015:-656.055,0,-324.429	0/1:210:106,104:106:3794:104:3678:-221.599,0,-138.072	0/1:294:150,144:150:5364:144:5133:-329.631,0,-215.686	1/1:24:0,24:0:0:24:830:-68.8409,-7.22472,0	0/1:45:20,25:20:711:25:900:-65.6669,0,-11.1224	1/1:11:0,11:0:0:11:381:-33.2076,-3.31133,0	0/1:21:14,7:14:485:7:252:-15.2862,0,-17.6649	0/1:21:7,14:7:252:14:504:-39.3765,0,-1.73798	0/1:480:251,229:251:8995:229:8149:-500.999,0,-410.382	0/1:288:175,113:175:6263:113:3989:-232.581,0,-220.667	0/1:134:74,60:74:2660:60:2124:-134.911,0,-98.3041	1/1:6:0,6:0:0:6:216:-17.6532,-1.80618,0	1/1:293:3,290:3:104:290:10326:-815.762,-81.9081,0	1/1:75:0,75:0:0:75:2692:-224.154,-22.5773,0	0/1:300:130,170:130:4659:170:6044:-383.55,0,-109.36	0/1:203:92,111:92:3312:111:3980:-252.681,0,-131.047	0/1:177:75,102:75:2688:102:3587:-225.227,0,-109.389	1/1:200:0,200:0:0:200:7122:-563.099,-60.206,0	0/1:190:97,93:97:3475:93:3292:-209.801,0,-119.93	1/1:353:0,353:0:0:353:12544:-1003.09,-106.264,0	1/1:243:0,243:0:0:243:8680:-675.369,-73.1503,0	0/1:358:191,167:191:6847:167:5936:-364.873,0,-278.077	1/1:330:0,329:0:0:329:11720:-895.743,-99.0389,0	0/1:18:13,5:13:464:5:180:-8.98847,0,-18.0745	1/1:348:3,345:3:104:345:12323:-967.022,-98.4124,0	1/1:112:0,112:0:0:112:3955:-334.112,-33.7154,0	0/1:17:15,2:15:536:2:72:-0.980879,0,-21.5969	0/1:334:156,178:156:5551:178:6311:-425.977,0,-169.766	0/1:125:68,57:68:2440:57:2040:-121.791,0,-97.5911	0/1:16:7,9:7:248:9:324:-23.2732,0,-8.6614	0/1:32:20,12:20:716:12:432:-27.3933,0,-35.3926	0/1:227:103,124:103:3658:124:4414:-299.536,0,-85.0753	0/1:245:113,132:113:4040:132:4712:-303.407,0,-135.24	1/1:13:0,13:0:0:13:453:-36.1615,-3.91339,0	0/1:292:170,122:170:6100:122:4326:-248.306,0,-285.245	0/1:428:197,231:197:7039:231:8234:-529.558,0,-289.562	0/1:172:87,85:87:3084:85:3015:-178.108,0,-122.761	1/1:282:0,282:0:0:282:10021:-786.892,-84.8905,0	0/1:371:200,171:200:7155:171:6090:-364.863,0,-291.524	0/1:259:168,91:168:6012:91:3239:-191.125,0,-207.943	1/1:121:1,120:1:32:120:4287:-369.54,-35.4271,0	1/1:236:0,236:0:0:236:8430:-649.214,-71.0431,0	0/1:201:102,99:102:3651:99:3528:-218.353,0,-169.784	0/1:50:33,17:33:1180:17:612:-35.2774,0,-46.8579	1/1:217:1,216:1:36:216:7677:-641.128,-64.3245,0	0/1:200:83,117:83:2968:117:4160:-267.476,0,-53.8368	1/1:401:0,401:0:0:401:14224:-1154.25,-120.713,0	1/1:361:1,360:1:36:360:12881:-1012.33,-107.274,0	0/1:250:153,97:153:5452:97:3453:-211.101,0,-179.196	1/1:318:2,316:2:72:316:11274:-898.341,-90.3675,0	0/1:40:16,24:16:576:24:848:-55.7666,0,-22.1032	1/1:288:0,288:0:0:288:10262:-817.263,-86.6966,0	0/1:279:146,133:146:5210:133:4702:-286.412,0,-207.912	1/1:429:3,426:3:108:426:15073:-1179.87,-121.243,0	1/1:201:0,201:0:0:201:7202:-554.196,-60.507,0	1/1:181:1,180:1:36:180:6420:-516.877,-52.9898,0	0/1:217:113,104:113:4039:104:3664:-217.447,0,-178.54	1/1:399:5,394:5:180:394:14071:-1095.2,-110.806,0	0/1:80:38,42:38:1360:42:1486:-87.1936,0,-49.5664	0/1:170:82,88:82:2928:88:3131:-202.643,0,-90.7531	1/1:186:0,186:0:0:186:6623:-528.83,-55.9916,0	0/1:134:73,61:73:2624:61:2166:-138.787,0,-65.7119	0/1:237:128,109:128:4592:109:3883:-261.517,0,-113.164	0/1:196:130,66:130:4660:66:2341:-130.886,0,-195.876	1/1:254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chr09	17503672	.	G	C	62883.7	PASS	AB=0.510206;ABP=14.091;AC=59;AF=0.31383;AN=188;AO=6275;CIGAR=1X;DP=20401;DPB=20401;DPRA=1.14177;EPP=13620.3;EPPR=30627.3;GTI=0;LEN=1;MEANALT=1.125;MQM=22.1504;MQMR=43.3745;NS=94;NUMALT=1;ODDS=0.90165;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220218;QR=497239;RO=14115;RPL=3018;RPP=22.7771;RPPR=186.125;RPR=3257;RUN=1;SAF=3019;SAP=22.4477;SAR=3256;SRF=6513;SRP=185.454;SRR=7602;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:137:75,62:75:2608:62:2175:-59.1061,0,-172.883	0/0:259:259,0:259:9132:0:0:0,-77.9668,-718.665	0/0:322:322,0:322:11395:0:0:0,-96.9317,-922.178	0/0:524:523,1:523:18469:1:36:0,-154.919,-1480.76	0/1:210:99,111:99:3497:111:3916:-167.626,0,-205.071	0/1:104:48,56:48:1711:56:1990:-57.1543,0,-106.687	0/0:226:224,2:224:7970:2:72:0,-62.6727,-635.056	0/1:360:197,163:197:6982:163:5747:-213.361,0,-436.059	0/1:257:129,128:129:4520:128:4459:-151.332,0,-291.414	0/1:227:100,127:100:3485:127:4458:-203.388,0,-204.176	0/1:143:66,77:66:2295:77:2683:-95.3158,0,-146.262	0/0:218:218,0:218:7458:0:0:0,-65.6245,-611.628	0/1:167:82,85:82:2902:85:2929:-86.8509,0,-184.325	0/1:167:86,81:86:3041:81:2758:-72.1774,0,-198.042	0/1:138:70,68:70:2461:68:2397:-92.9286,0,-157.364	0/1:141:64,77:64:2242:77:2662:-85.4525,0,-141.036	0/1:151:75,76:75:2638:76:2671:-97.6903,0,-158.966	0/1:128:74,54:74:2616:54:1911:-65.4057,0,-166.486	0/0:110:110,0:110:3848:0:0:0,-33.1133,-319.317	0/1:314:140,174:140:4975:174:6144:-268.066,0,-297.921	0/1:363:156,207:156:5531:207:7314:-272.788,0,-324.34	0/1:161:55,106:55:1930:106:3749:-180.283,0,-109.74	0/0:212:212,0:212:7498:0:0:0,-63.8184,-628.632	0/1:213:111,102:111:3922:102:3548:-137.448,0,-232.212	0/0:179:175,4:175:6163:4:144:0,-49.4503,-496.931	0/1:553:296,257:296:10433:257:9034:-411.05,0,-631.804	0/1:527:266,260:266:9433:260:9167:-310.055,0,-600.731	0/1:94:52,42:52:1846:42:1459:-45.7403,0,-115.344	0/1:483:275,208:275:9755:208:7345:-323.496,0,-636.816	0/1:207:101,106:101:3551:106:3714:-141.876,0,-213.438	0/1:291:141,150:141:5010:150:5315:-216.774,0,-321.116	0/0:23:23,0:23:803:0:0:0,-6.92369,-66.3014	0/1:45:26,19:26:927:19:665:-10.2459,0,-68.0936	0/0:11:11,0:11:353:0:0:0,-3.31133,-30.6659	0/1:20:6,14:6:212:14:496:-17.9909,0,-11.9793	0/1:21:12,9:12:432:9:308:-5.01047,0,-32.8996	0/1:470:225,245:225:7806:245:8527:-395.659,0,-478.663	0/1:283:112,171:112:3920:171:5998:-212.148,0,-225.993	0/1:134:61,73:61:2106:73:2535:-92.2041,0,-134.958	0/0:6:6,0:6:212:0:0:0,-1.80618,-17.2875	0/0:287:284,3:284:9945:3:108:0,-80.0111,-786.963	0/0:74:74,0:74:2596:0:0:0,-22.2762,-216.434	0/1:288:166,122:166:5874:122:4314:-98.078,0,-372.87	0/1:204:111,92:111:3904:92:3248:-129.237,0,-247.264	0/1:177:103,73:103:3621:73:2577:-104.615,0,-228.412	0/0:194:194,0:194:6828:0:0:0,-58.3998,-539.065	0/1:185:88,97:88:3106:97:3374:-118.757,0,-194.626	0/0:349:349,0:349:12331:0:0:0,-105.059,-989.003	0/0:241:241,0:241:8501:0:0:0,-72.5482,-661.217	0/1:353:162,190:162:5731:190:6656:-273.934,0,-352.719	0/0:328:328,0:328:11532:0:0:0,-98.7378,-889.007	0/1:19:5,14:5:180:14:464:-19.9204,0,-8.68744	0/0:354:352,2:352:12436:2:72:0,-102.936,-982.35	0/0:110:110,0:110:3912:0:0:0,-33.1133,-329.405	0/1:17:2,15:2:72:15:536:-23.2489,0,-0.980878	0/1:337:181,156:181:6372:156:5473:-172.951,0,-430.562	0/1:125:58,67:58:2059:67:2362:-95.6109,0,-123.31	0/1:15:8,7:8:288:7:237:-8.75611,0,-21.0428	0/1:31:12,19:12:428:19:667:-33.0036,0,-27.6059	0/1:226:122,104:122:4330:104:3583:-83.4909,0,-293.765	0/1:238:129,109:129:4504:109:3820:-131.465,0,-290.578	0/0:14:14,0:14:492:0:0:0,-4.21442,-39.3898	0/1:289:120,169:120:4258:169:5942:-279.222,0,-242.585	0/1:427:228,199:228:7975:199:6981:-288.787,0,-509.806	0/1:171:87,84:87:3050:84:2946:-116.124,0,-184.221	0/0:284:284,0:284:10077:0:0:0,-85.4925,-792.228	0/1:362:169,193:169:5950:193:6853:-276.675,0,-358.063	0/1:255:90,165:90:3179:165:5805:-201.393,0,-186.931	0/0:120:119,1:119:4180:1:32:0,-35.1261,-360.463	0/0:241:241,0:241:8514:0:0:0,-72.5482,-660.618	0/1:195:100,95:100:3461:95:3285:-154.569,0,-217.03	0/1:46:17,29:17:600:29:1029:-41.4217,0,-35.6705	0/0:219:218,1:218:7655:1:36:0,-64.9265,-639.474	0/1:203:119,83:119:4230:83:2948:-53.0267,0,-271.892	0/0:394:394,0:394:13918:0:0:0,-118.606,-1127.85	0/0:349:348,1:348:12374:1:36:0,-103.662,-971.651	0/1:244:93,151:93:3307:151:5383:-176.745,0,-201.228	0/0:312:311,1:311:10972:1:36:0,-91.1003,-879.072	0/1:40:23,17:23:804:17:600:-24.8112,0,-51.9017	0/0:287:287,0:287:10168:0:0:0,-86.3956,-810.741	0/1:277:134,143:134:4740:143:4972:-200.479,0,-291.673	0/0:421:414,3:414:14571:3:108:0,-117.896,-1139.15	0/0:195:195,0:195:6873:0:0:0,-58.7008,-529.098	0/0:176:175,1:175:6172:1:36:0,-51.4846,-496.641	0/1:211:104,107:104:3680:107:3790:-164.6,0,-221.385	0/0:392:387,4:387:13601:4:129:0,-111.396,-1061.85	0/1:82:43,39:43:1490:39:1357:-52.3199,0,-87.6322	0/1:167:88,79:88:3065:79:2725:-87.8125,0,-197.904	0/0:183:183,0:183:6389:0:0:0,-55.0885,-513.767	0/1:132:63,69:63:2182:69:2425:-59.4454,0,-139.347	0/1:232:108,124:108:3700:124:4337:-105.651,0,-247.995	0/1:191:60,130:60:2116:130:4546:-194.49,0,-114.89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chr09	17506859	.	C	T	186261	PASS	AB=0.513036;ABP=16.3711;AC=129;AF=0.68617;AN=188;AO=10519;CIGAR=1X;DP=14996;DPB=14996;DPRA=0;EPP=22844.7;EPPR=9594.42;GTI=0;LEN=1;MEANALT=1.3617;MQM=36.1513;MQMR=59.8033;NS=94;NUMALT=1;ODDS=14.3003;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=376031;QR=158203;RO=4429;RPL=10519;RPP=22844.7;RPPR=9603.1;RPR=0;RUN=1;SAF=0;SAP=22844.7;SAR=10519;SRF=1;SRP=9611.78;SRR=4428;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:20,31:20:720:31:1100:-77.2705,0,-49.7762	1/1:204:1,202:1:36:202:7225:-600.103,-57.858,0	1/1:243:2,240:2:72:240:8616:-712.807,-68.3171,0	1/1:485:4,480:4:144:480:17217:-1408.05,-134.803,0	0/1:153:53,99:53:1884:99:3552:-243.67,0,-123.722	0/1:77:24,53:24:860:53:1900:-135.854,0,-54.5425	1/1:215:2,213:2:68:213:7506:-617.734,-61.8825,0	0/1:193:105,88:105:3734:88:3144:-205.861,0,-276.267	0/1:150:50,100:50:1765:100:3591:-252.088,0,-113.977	0/1:134:65,69:65:2319:69:2468:-162.533,0,-168.632	0/1:59:37,22:37:1324:22:788:-47.6834,0,-101.701	1/1:97:0,97:0:0:97:3457:-288.052,-29.1999,0	0/1:90:40,50:40:1424:50:1785:-122.769,0,-101.365	0/1:91:49,42:49:1747:42:1500:-95.7521,0,-130.12	0/1:77:38,38:38:1355:38:1364:-86.2107,0,-99.0408	0/1:78:35,42:35:1256:42:1493:-100.201,0,-89.8353	0/1:106:64,41:64:2300:41:1457:-88.0343,0,-175.333	0/1:69:41,28:41:1464:28:1004:-62.5085,0,-111.285	1/1:37:0,36:0:0:36:1292:-108.059,-10.8371,0	0/1:323:151,170:151:5381:170:6100:-399.124,0,-386.592	0/1:209:100,109:100:3560:109:3893:-257.751,0,-257.695	0/1:197:103,94:103:3669:94:3357:-215.277,0,-271.11	1/1:115:5,110:5:180:110:3952:-307.979,-18.0664,0	0/1:184:83,101:83:2964:101:3613:-243.482,0,-211.604	1/1:146:1,145:1:36:145:5143:-419.148,-40.3521,0	0/1:521:259,262:259:9275:262:9347:-611.659,0,-677.88	0/1:309:146,163:146:5213:163:5754:-377.703,0,-376.29	0/1:54:25,29:25:900:29:1017:-67.7536,0,-65.0654	0/1:475:179,295:179:6373:295:10470:-717.31,0,-430.665	0/1:424:245,179:245:8783:179:6428:-397.993,0,-662.819	0/1:240:134,105:134:4765:105:3756:-238.616,0,-356.733	1/1:9:0,9:0:0:9:320:-26.8292,-2.70927,0	0/1:24:13,11:13:464:11:396:-25.8084,0,-34.8728	1/1:7:0,7:0:0:7:252:-21.4153,-2.10721,0	0/1:6:5,1:5:180:1:36:-1.53997,0,-14.7459	0/1:13:6,7:6:216:7:252:-16.9305,0,-15.8771	0/1:264:131,133:131:4688:133:4745:-311.585,0,-342.609	0/1:351:203,148:203:7255:148:5286:-331.186,0,-545.45	0/1:69:40,29:40:1427:29:1044:-66.898,0,-106.591	1/1:5:0,5:0:0:5:180:-15.1755,-1.50515,0	1/1:407:11,393:11:396:393:13965:-1115.08,-85.9697,0	1/1:49:0,48:0:0:48:1724:-139.067,-14.4494,0	0/1:215:112,103:112:4004:103:3676:-239.865,0,-295.829	0/1:102:43,57:43:1536:57:2044:-137.266,0,-108.097	0/1:84:38,43:38:1364:43:1528:-102.085,0,-98.3453	1/1:107:1,106:1:36:106:3793:-309.744,-29.5616,0	0/1:351:164,187:164:5868:187:6705:-454.482,0,-422.013	1/1:316:2,314:2:72:314:11245:-919.489,-88.2888,0	1/1:197:4,193:4:140:193:6909:-553.409,-46.3583,0	0/1:255:123,131:123:4404:131:4708:-310.625,0,-317.848	1/1:287:1,284:1:36:284:10143:-832.466,-82.5451,0	0/1:24:19,5:19:676:5:180:-7.95079,0,-53.9433	1/1:253:0,251:0:0:251:9001:-748.257,-75.5585,0	1/1:69:0,69:0:0:69:2480:-204.586,-20.7711,0	0/1:31:26,5:26:913:5:180:-5.9145,0,-72.9933	0/1:230:82,148:82:2932:148:5309:-367.135,0,-193.603	0/1:82:53,29:53:1900:29:1025:-60.4337,0,-146.593	0/1:17:8,9:8:288:9:324:-21.9774,0,-21.1499	0/1:14:8,6:8:288:6:216:-13.8281,0,-22.053	0/1:97:39,58:39:1396:58:2080:-140.814,0,-96.7392	0/1:183:87,93:87:3116:93:3321:-219.277,0,-226.15	1/1:8:0,8:0:0:8:280:-21.875,-2.40824,0	0/1:349:134,215:134:4800:215:7732:-530.621,0,-327.096	0/1:311:155,155:155:5551:155:5552:-360.211,0,-406.034	0/1:103:56,47:56:1993:47:1692:-108.566,0,-148.636	1/1:183:1,182:1:36:182:6475:-529.873,-53.5918,0	0/1:326:178,148:178:6342:148:5308:-340.218,0,-470.845	0/1:142:83,59:83:2949:59:2120:-132.35,0,-222.897	1/1:34:0,34:0:0:34:1209:-100.216,-10.235,0	1/1:91:1,90:1:36:90:3224:-264.219,-25.1149,0	0/1:95:39,55:39:1396:55:1957:-131.594,0,-97.3035	0/1:25:10,15:10:360:15:525:-36.1834,0,-25.2186	1/1:210:0,209:0:0:209:7412:-619.352,-62.9153,0	0/1:63:31,32:31:1116:32:1110:-74.6063,0,-80.6806	1/1:232:1,231:1:36:231:8272:-677.116,-66.2407,0	1/1:352:2,349:2:72:349:12536:-1024.27,-102.182,0	0/1:207:93,114:93:3328:114:4051:-274.954,0,-237.425	1/1:200:1,199:1:36:199:7135:-589.684,-56.6077,0	0/1:19:11,8:11:396:8:288:-18.7073,0,-30.2632	1/1:259:0,259:0:0:259:9300:-765.843,-77.9668,0	0/1:273:99,174:99:3533:174:6190:-432.484,0,-235.979	1/1:265:2,261:2:72:261:9356:-758.606,-74.623,0	1/1:144:0,142:0:0:142:5089:-418.125,-42.7463,0	1/1:82:0,79:0:0:79:2806:-232.182,-23.7814,0	0/1:93:55,37:55:1959:37:1314:-80.1897,0,-148.571	1/1:203:1,200:1:36:200:7188:-588.737,-57.2586,0	0/1:41:21,20:21:752:20:701:-46.8454,0,-55.664	0/1:107:54,52:54:1940:52:1868:-124.536,0,-142.632	1/1:97:0,96:0:0:96:3433:-287.178,-28.8989,0	0/1:53:23,29:23:819:29:1040:-70.1295,0,-58.047	0/1:77:32,45:32:1143:45:1612:-110.185,0,-79.9994	0/1:92:66,26:66:2336:26:936:-49.7316,0,-182.803	1/1:196:0,195:0:0:195:6988:-577.239,-58.7009,0	1/1:140:0,139:0:0:139:4976:-410.672,-41.8432,0
chr09	17517539	.	CAACAGT	TAATAGC,CAACAGC	186168	PASS	AB=0.525669,0.469096;ABP=110.142,158.298;AC=94,94;AF=0.5,0.5;AN=188;AO=9840,8781;CIGAR=1X2M1X2M1X,6M1X;DP=18719;DPB=18727.4;DPRA=0,0;EPP=21370.3,19053.3;EPPR=6.91895;GTI=0;LEN=7,1;MEANALT=2.93617,2.93617;MQM=22.2917,28.5258;MQMR=59.8;NS=94;NUMALT=2;ODDS=110.317;PAIRED=0,0;PAIREDR=0;PAO=26.5,2.5;PQA=860,39.5;PQR=21.5;PRO=2;QA=335938,313705;QR=162;RO=5;RPL=0,0;RPP=21370.3,19070.7;RPPR=13.8677;RPR=9840,8781;RUN=1,1;SAF=0,2;SAP=21370.3,19053.3;SAR=9840,8779;SRF=1;SRP=6.91895;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:80:0,35,45:0:0:35,45:1199,1590:-146.117,-97.1788,-86.6428,-49.1642,0,-35.6178	1/2:346:0,195,150:0:0:195,150:6680,5333:-595.392,-325.304,-266.603,-270.089,0,-224.934	1/2:277:0,156,121:0:0:156,121:5299,4342:-487.732,-264.534,-217.574,-223.222,0,-186.797	1/2:262:0,150,111:0:0:150,111:5109,3982:-518.684,-245.433,-200.278,-273.41,0,-239.996	1/2:139:0,64,74:0:0:64,74:2171,2656:-266.224,-164.853,-145.588,-101.333,0,-79.0572	1/2:103:0,57,45:0:0:57,45:1954,1592:-178.299,-98.7549,-81.5962,-79.5462,0,-65.9998	1/2:241:0,159,82:0:0:159,82:5374,2940:-468.813,-182.902,-135.038,-286.176,0,-261.492	1/2:328:0,167,159:0:0:167,159:5734,5707:-584.076,-351.376,-301.104,-232.715,0,-184.852	1/2:205:0,114,91:0:0:114,91:3836,3272:-355.241,-197.417,-163.1,-158.06,0,-130.666	1/2:216:0,121,94:0:0:121,94:4153,3368:-428.957,-207.978,-171.553,-220.953,0,-192.656	1/2:122:0,67,55:0:0:67,55:2349,1972:-242.669,-121.695,-101.526,-121.232,0,-104.675	1/2:156:0,78,78:0:0:78,78:2685,2780:-283.391,-173.129,-149.648,-110.22,0,-86.7394	1/2:145:0,71,74:0:0:71,74:2462,2632:-259.922,-161.6,-140.227,-98.5526,0,-76.2764	1/2:145:0,56,89:0:0:56,89:1912,3175:-282.202,-193.343,-176.485,-89.0938,0,-62.3021	1/2:204:0,95,107:0:0:95,107:3286,3832:-406.662,-236.388,-207.79,-170.269,0,-138.058	1/2:115:1,62,52:1:29:62,52:2137,1860:-210.298,-112.74,-96.3846,-95.5079,0,-82.1643	1/2:188:0,86,101:0:0:86,101:2973,3620:-340.528,-221.153,-195.264,-119.356,0,-88.9515	1/2:125:0,49,76:0:0:49,76:1690,2713:-231.705,-164.595,-149.845,-67.3299,0,-44.4517	1/2:86:0,53,33:0:0:53,33:1828,1180:-144.908,-73.12,-57.1654,-71.7423,0,-61.8083	1/2:389:0,199,190:0:0:199,190:6845,6816:-783.164,-421.696,-361.791,-361.726,0,-304.53	1/2:302:1,142,158:1:30:142,158:4820,5653:-565.262,-345.241,-304.894,-217.88,0,-172.716	1/2:287:0,179,107:0:0:179,107:6087,3809:-553.108,-230.038,-176.153,-323.106,0,-290.896	1/2:156:0,85,70:0:0:85,70:2908,2508:-310.54,-153.113,-127.526,-157.336,0,-136.264	1/2:203:0,121,80:0:0:121,80:4124,2868:-366.725,-177.639,-141.214,-189.127,0,-165.045	1/2:171:0,108,63:0:0:108,63:3680,2264:-304.859,-137.504,-104.993,-167.605,0,-148.64	1/2:642:0,331,309:0:0:331,309:11353,11017:-1259.08,-660.977,-561.336,-598.126,0,-505.108	1/2:357:0,167,186:0:0:167,186:5657,6652:-675.985,-410.681,-360.409,-265.23,0,-209.239	1/2:99:0,49,50:0:0:49,50:1701,1785:-187.56,-111.005,-96.2544,-76.7975,0,-61.746	1/2:556:0,354,200:0:0:354,200:12077,7146:-1073.48,-429.027,-322.462,-644.475,0,-584.269	1/2:167:0,83,83:0:0:83,83:2834,2975:-312.248,-183.392,-158.407,-128.928,0,-103.943	1/2:276:0,178,96:0:0:178,96:6029,3432:-535.142,-210.496,-156.913,-324.785,0,-295.886	1/2:12:0,7,5:0:0:7,5:235,180:-22.4695,-11.547,-9.43976,-11.1745,0,-9.66938	1/2:19:0,8,11:0:0:8,11:274,388:-36.3371,-23.8248,-21.4166,-12.7467,0,-9.43541	1/2:11:0,7,4:0:0:7,4:243,144:-18.6304,-9.07434,-6.96713,-9.80049,0,-8.59637	1/2:14:0,9,5:0:0:9,5:317,180:-23.7719,-11.2304,-8.52117,-12.7869,0,-11.2818	1/2:14:0,6,8:0:0:6,8:208,288:-26.4484,-18.1857,-16.3795,-8.49067,0,-6.08243	1/2:476:0,220,254:0:0:220,254:7577,9089:-946.792,-544.696,-478.469,-402.167,0,-325.705	1/2:429:0,270,157:0:0:270,157:9202,5588:-764.682,-344.081,-262.803,-420.68,0,-373.419	1/2:121:0,67,54:0:0:67,54:2294,1920:-210.762,-117.388,-97.2188,-93.6102,0,-77.3546	1/2:4:0,1,3:0:0:1,3:36,93:-7.82881,-6.26374,-5.96271,-1.78555,0,-0.882465	1/2:170:0,98,72:0:0:98,72:3327,2588:-310.693,-158.881,-129.38,-152.011,0,-130.337	1/2:68:0,32,36:0:0:32,36:1111,1288:-128.511,-78.3321,-68.6992,-50.4185,0,-39.5814	1/2:308:0,185,122:0:0:185,122:6293,4372:-557.825,-267.727,-212.036,-290.005,0,-253.279	1/2:196:0,71,124:0:0:71,124:2476,4434:-403.274,-274.457,-253.084,-128.828,0,-91.4999	1/2:158:0,77,81:0:0:77,81:2656,2892:-320.705,-180.794,-157.615,-140.169,0,-115.785	1/2:117:0,43,73:0:0:43,73:1480,2607:-234.52,-157.048,-144.104,-77.4908,0,-55.5156	1/2:298:2,148,145:2:72:148,145:5065,5139:-513.327,-310.01,-271.333,-197.985,0,-160.212	1/2:385:0,226,158:0:0:226,158:7665,5652:-751.133,-348.774,-280.742,-402.457,0,-354.894	1/2:253:0,139,110:0:0:139,110:4734,3924:-492.677,-243.727,-201.883,-249.033,0,-215.919	1/2:395:0,198,196:0:0:198,196:6747,6998:-791.913,-434.102,-374.498,-357.803,0,-298.801	1/2:284:0,146,138:0:0:146,138:4915,4912:-557.118,-295.032,-251.082,-262.057,0,-220.515	1/2:37:0,21,16:0:0:21,16:705,572:-73.2279,-36.001,-29.6794,-37.4864,0,-32.6699	1/2:308:0,165,142:0:0:165,142:5649,5077:-546.865,-310.768,-261.098,-236.115,0,-193.369	1/2:62:0,44,17: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chr09	17517551	.	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chr09	17602520	.	A	G	74033.6	PASS	AB=0.53974;ABP=125.202;AC=58;AF=0.308511;AN=188;AO=4823;CIGAR=1X;DP=14778;DPB=14778;DPRA=1.14604;EPP=10415.3;EPPR=21518.1;GTI=0;LEN=1;MEANALT=1.04615;MQM=35.3346;MQMR=39.024;NS=94;NUMALT=1;ODDS=2.18605;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171505;QR=356139;RO=9952;RPL=2673;RPP=126.162;RPPR=45.6377;RPR=2150;RUN=1;SAF=2680;SAP=132.843;SAR=2143;SRF=5206;SRP=49.1803;SRR=4746;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:37,21:37:1319:21:739:-42.6752,0,-67.6775	0/0:134:134,0:134:4781:0:0:0,-40.338,-270.494	0/0:188:188,0:188:6756:0:0:0,-56.5936,-474.209	0/0:417:417,0:417:14911:0:0:0,-125.53,-1143.64	0/1:90:53,37:53:1891:37:1320:-57.625,0,-108.32	0/1:57:25,32:25:896:32:1152:-52.5031,0,-40.9494	0/0:172:172,0:172:6172:0:0:0,-51.7772,-375.637	0/1:230:111,119:111:3968:119:4244:-198.523,0,-183.412	0/1:195:94,101:94:3357:101:3607:-173.104,0,-138.188	0/0:219:219,0:219:7826:0:0:0,-65.9256,-510.282	0/1:113:45,68:45:1608:68:2385:-138.041,0,-77.5667	0/0:180:180,0:180:6408:0:0:0,-54.1854,-435.491	0/1:154:61,93:61:2184:93:3298:-189.662,0,-111.751	0/1:128:72,56:72:2558:56:2004:-90.6869,0,-123.747	0/1:156:84,72:84:3009:72:2567:-138.29,0,-162.122	0/1:96:41,55:41:1468:55:1942:-107.04,0,-75.6951	0/1:107:53,54:53:1893:54:1904:-72.8766,0,-82.5253	0/1:88:49,39:49:1756:39:1368:-65.5415,0,-82.9798	0/0:61:61,0:61:2184:0:0:0,-18.3628,-158.425	0/1:152:69,83:69:2480:83:2948:-128.679,0,-118.075	0/1:255:111,144:111:3992:144:5105:-241.932,0,-211.784	0/1:133:31,102:31:1107:102:3621:-190.663,0,-36.0687	0/0:96:96,0:96:3433:0:0:0,-28.8989,-215.555	0/1:69:49,20:49:1752:20:720:-19.622,0,-71.6893	0/0:106:106,0:106:3808:0:0:0,-31.9092,-275.513	0/1:565:266,299:266:9543:299:10673:-579.496,0,-488.397	0/1:338:160,178:160:5674:178:6338:-325.236,0,-290.593	0/1:77:25,52:25:887:52:1864:-93.7868,0,-33.3854	0/1:358:193,165:193:6917:165:5888:-346.142,0,-423.795	0/1:194:86,108:86:3080:108:3827:-187.225,0,-120.099	0/1:150:57,93:57:2044:93:3291:-169.771,0,-88.6343	0/0:7:7,0:7:252:0:0:0,-2.10721,-15.2267	0/1:10:4,6:4:144:6:216:-15.0652,0,-8.72458	0/0:7:7,0:7:248:0:0:0,-2.10721,-16.4187	0/1:7:4,3:4:144:3:108:-7.93686,0,-9.53679	0/1:13:2,11:2:72:11:392:-22.1737,0,-1.20859	0/1:400:198,202:198:7071:202:7182:-385.754,0,-380.744	0/1:175:95,80:95:3385:80:2834:-121.943,0,-161.61	0/1:99:55,44:55:1972:44:1558:-72.1912,0,-96.2148	0/0:8:8,0:8:284:0:0:0,-2.40824,-18.1163	0/0:207:200,7:200:7135:7:248:0,-45.5515,-486.327	0/0:51:51,0:51:1832:0:0:0,-15.3525,-123.503	0/1:174:71,103:71:2548:103:3666:-217.509,0,-151.375	0/1:160:90,70:90:3228:70:2508:-119.291,0,-175.769	0/1:150:79,70:79:2836:70:2497:-116.348,0,-144.849	0/0:174:174,0:174:6213:0:0:0,-52.3792,-421.123	0/1:224:92,132:92:3291:132:4684:-219.702,0,-165.543	0/0:263:261,2:261:9318:2:72:0,-72.3391,-662.572	0/0:178:178,0:178:6367:0:0:0,-53.5833,-436.629	0/1:203:92,111:92:3270:111:3967:-223.616,0,-171.965	0/0:90:90,0:90:3232:0:0:0,-27.0927,-238.845	0/1:10:6,4:6:216:4:144:-8.8978,0,-12.6231	0/0:168:168,0:168:6021:0:0:0,-50.573,-412.17	0/0:78:78,0:78:2800:0:0:0,-23.4803,-207.035	0/1:11:2,9:2:72:9:324:-11.3936,0,-1.81065	0/1:265:108,157:108:3852:157:5591:-368.744,0,-212.822	0/1:93:43,50:43:1540:50:1773:-86.2033,0,-78.1499	0/1:14:4,10:4:144:10:360:-23.5468,0,-4.03952	0/1:25:11,14:11:383:14:500:-26.9789,0,-18.6855	0/1:104:65,39:65:2328:39:1389:-61.4833,0,-127.202	0/1:227:102,125:102:3643:125:4427:-232.421,0,-195.26	0/0:9:9,0:9:309:0:0:0,-2.70927,-22.4537	0/1:432:194,237:194:6955:237:8454:-491.285,0,-371.93	0/1:343:122,221:122:4388:221:7866:-407.842,0,-183.907	0/1:110:39,71:39:1392:71:2533:-110.224,0,-54.5634	0/0:119:119,0:119:4257:0:0:0,-35.8226,-329.772	0/1:231:72,159:72:2580:159:5613:-307.858,0,-111.292	0/1:211:59,152:59:2120:152:5439:-347.435,0,-85.4595	0/0:69:69,0:69:2467:0:0:0,-20.7711,-191.383	0/0:122:122,0:122:4384:0:0:0,-36.7257,-293.854	0/1:162:91,71:91:3251:71:2540:-122.202,0,-179.278	0/1:48:24,24:24:860:24:856:-45.1073,0,-45.5037	0/0:124:124,0:124:4456:0:0:0,-37.3277,-315.017	0/1:189:82,107:82:2929:107:3756:-193.118,0,-139.912	0/0:228:228,0:228:8168:0:0:0,-68.6348,-471.147	0/0:383:383,0:383:13685:0:0:0,-115.294,-1074.85	0/1:131:82,49:82:2928:49:1756:-86.3304,0,-150.534	0/0:169:168,1:168:6027:1:36:0,-47.2848,-438.225	0/1:11:3,8:3:108:8:288:-16.3348,0,-1.70985	0/0:204:204,0:204:7304:0:0:0,-61.4101,-520.054	0/1:155:77,78:77:2756:78:2762:-150.32,0,-151.683	0/0:372:371,1:371:13273:1:36:0,-109.897,-887.974	0/0:168:165,2:165:5932:2:72:0,-46.6168,-371.322	0/0:159:159,0:159:5699:0:0:0,-47.8638,-406.813	0/1:149:74,75:74:2660:75:2657:-116.136,0,-122.911	0/0:299:298,1:298:10676:1:36:0,-87.9214,-731.083	0/1:72:41,31:41:1476:31:1091:-50.2129,0,-70.7232	0/1:140:63,77:63:2260:77:2734:-143.641,0,-104.553	0/0:155:155,0:155:5556:0:0:0,-46.6596,-368.753	0/1:77:45,32:45:1604:32:1144:-50.7491,0,-86.3756	0/1:155:80,75:80:2872:75:2665:-141.902,0,-161.019	0/1:165:55,110:55:1980:110:3890:-214.683,0,-83.8162	0/0:251:250,1:250:8921:1:36:0,-71.9628,-677.945	0/0:235:235,0:235:8403:0:0:0,-70.742,-596.487
chr09	17754951	.	A	G	20482.1	PASS	AB=0.261739;ABP=3751.93;AC=85;AF=0.452128;AN=188;AO=2009;CIGAR=1X;DP=7887;DPB=7887;DPRA=22.3381;EPP=4365.5;EPPR=12764.8;GTI=26;LEN=1;MEANALT=1.01136;MQM=51.9801;MQMR=59.9818;NS=94;NUMALT=1;ODDS=0.622013;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70897;QR=208449;RO=5877;RPL=0;RPP=4365.5;RPPR=12764.8;RPR=2009;RUN=1;SAF=0;SAP=4365.5;SAR=2009;SRF=0;SRP=12764.8;SRR=5877;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:56:52,4:52:1841:4:144:0,-3.5755,-152.686	0/1:35:30,5:30:1067:5:180:-5.9744,0,-85.8052	0/1:169:144,25:144:5127:25:880:-28.0517,0,-410.698	0/1:177:133,44:133:4700:44:1550:-86.0933,0,-369.882	0/1:42:35,7:35:1252:7:243:-9.40524,0,-100.342	0/1:20:16,4:16:564:4:144:-7.25955,0,-45.0697	0/1:43:34,9:34:1215:9:320:-16.1438,0,-96.7115	0/1:113:91,22:91:3223:22:780:-35.7942,0,-256.275	0/1:70:60,10:60:2140:10:352:-10.6901,0,-171.796	0/1:102:58,44:58:2063:44:1565:-108.974,0,-155.236	0/1:44:29,15:29:1027:15:523:-34.072,0,-79.4969	0/1:86:69,17:69:2423:17:600:-28.1353,0,-192.428	0/1:91:67,24:67:2366:24:829:-47.3493,0,-185.804	0/1:54:29,25:29:1027:25:879:-62.7606,0,-76.4866	0/1:71:47,24:47:1676:24:848:-55.1327,0,-129.754	0/1:63:36,27:36:1269:27:959:-67.2626,0,-95.5459	0/1:26:8,18:8:284:18:638:-49.7469,0,-18.0766	0/1:36:18,18:18:635:18:620:-44.7265,0,-46.6399	0/1:25:14,11:14:495:11:396:-28.3387,0,-37.3573	0/1:375:326,49:326:11474:49:1711:-41.0959,0,-919.671	0/1:143:114,29:114:4038:29:1003:-47.4103,0,-320.561	0/0:106:97,9:97:3447:9:320:0,-2.83607,-281.371	0/1:90:70,20:70:2486:20:716:-37.5563,0,-196.9	0/1:71:53,18:53:1883:18:635:-35.7763,0,-148.375	0/1:55:43,12:43:1508:12:424:-21.7601,0,-119.454	0/1:219:192,27:192:6806:27:951:-19.6294,0,-546.691	0/1:183:129,54:129:4602:54:1909:-116.587,0,-359.256	0/1:40:30,10:30:1063:10:351:-19.8431,0,-83.9396	0/1:191:171,20:171:6078:20:716:-6.89414,0,-489.543	0/1:111:80,31:80:2859:31:1104:-65.8677,0,-224.133	0/1:99:80,19:80:2825:19:680:-31.613,0,-224.687	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.6326	0/1:3:2,1:2:72:1:36:-2.68614,0,-5.93363	0/1:5:3,2:3:108:2:72:-5.31438,0,-8.57002	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:214:117,97:117:4139:97:3452:-245.318,0,-308.278	0/1:165:103,62:103:3675:62:2182:-146.147,0,-281.284	0/1:33:22,11:22:784:11:396:-25.5917,0,-60.9499	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:96:83,13:83:2909:13:459:-12.6886,0,-232.116	0/1:25:19,6:19:672:6:208:-11.3805,0,-53.2811	0/1:113:92,21:92:3273:21:752:-33.7702,0,-260.773	0/1:52:28,24:28:1008:24:846:-60.5146,0,-75.3828	0/1:53:33,20:33:1176:20:716:-48.5441,0,-90.1932	0/1:87:71,16:71:2484:16:572:-25.5015,0,-197.621	0/1:76:63,13:63:2251:13:451:-17.5858,0,-179.974	0/1:129:109,20:109:3846:20:699:-24.1402,0,-307.507	0/1:93:62,31:62:2192:31:1109:-71.4711,0,-169.548	0/1:86:77,9:77:2752:9:305:-1.81907,0,-222.034	0/1:181:114,67:114:4076:67:2386:-158.546,0,-312.54	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:120:100,20:100:3576:20:712:-28.0936,0,-285.924	0/1:36:26,10:26:924:10:356:-21.4668,0,-72.6406	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:103:89,14:89:3167:14:504:-14.1855,0,-254.249	0/1:40:32,8:32:1136:8:288:-14.1762,0,-90.5077	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:14:12,2:12:424:2:72:-2.60511,0,-34.282	0/1:52:38,14:38:1355:14:504:-29.9797,0,-106.596	0/1:114:91,23:91:3243:23:812:-38.7824,0,-257.774	0/1:3:2,1:2:72:1:36:-2.68833,0,-5.93363	0/1:266:186,79:186:6586:79:2768:-167.634,0,-512.695	0/1:161:101,60:101:3609:60:2117:-141.529,0,-276.549	0/1:41:29,12:29:1027:12:423:-24.9737,0,-80.3999	0/1:54:45,9:45:1620:9:309:-11.7102,0,-129.834	0/1:144:107,37:107:3804:37:1281:-71.7578,0,-299.209	0/1:130:114,16:114:4056:16:563:-11.6245,0,-326.094	0/1:15:11,4:11:384:4:144:-8.65101,0,-30.3792	0/1:42:25,17:25:888:17:599:-41.4698,0,-67.5958	0/1:54:42,12:42:1504:12:428:-22.2932,0,-119.399	0/1:26:23,3:23:824:3:108:-2.07257,0,-66.6565	0/1:109:75,34:75:2647:34:1183:-73.5193,0,-205.663	0/1:102:59,43:59:2066:43:1515:-105.137,0,-155.503	0/1:75:51,24:51:1805:24:855:-54.4573,0,-140.152	0/1:168:112,56:112:3988:56:1999:-128.976,0,-308.537	0/0:98:92,6:92:3254:6:216:0,-9.76018,-273.342	0/1:91:62,29:62:2216:29:1036:-65.3842,0,-172.311	0/1:19:15,4:15:532:4:129:-6.18272,0,-42.4935	0/1:93:67,26:67:2376:26:931:-55.9515,0,-186.103	0/1:118:100,18:100:3556:18:627:-20.9247,0,-284.729	0/1:195:131,64:131:4648:64:2275:-145.479,0,-359.784	0/1:124:74,50:74:2602:50:1716:-116.848,0,-197.099	0/1:47:31,16:31:1095:16:563:-36.7592,0,-84.7107	0/1:37:29,8:29:1032:8:269:-13.3577,0,-82.0554	0/1:95:74,21:74:2626:21:748:-38.9253,0,-207.989	0/1:18:12,6:12:419:6:216:-14.1374,0,-32.6241	0/1:66:49,17:49:1742:17:576:-32.1593,0,-137.195	0/1:75:42,33:42:1474:33:1180:-83.2954,0,-110.376	0/1:18:15,3:15:540:3:108:-4.64234,0,-43.518	0/1:74:53,21:53:1873:21:734:-43.6877,0,-146.571	0/1:77:64,13:64:2266:13:460:-18.4849,0,-181.023	0/1:235:165,70:165:5811:70:2443:-148.333,0,-452.365	0/1:93:53,40:53:1882:40:1411:-98.8799,0,-141.661
chr09	17754974	.	A	G	20228.8	PASS	AB=0.257876;ABP=3914.71;AC=85;AF=0.452128;AN=188;AO=1999;CIGAR=1X;DP=7969;DPB=7969;DPRA=22.571;EPP=4343.78;EPPR=12947.2;GTI=28;LEN=1;MEANALT=1.01136;MQM=52.0065;MQMR=59.9893;NS=94;NUMALT=1;ODDS=2.02372;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70563;QR=212761;RO=5969;RPL=0;RPP=4343.78;RPPR=12947.2;RPR=1999;RUN=1;SAF=0;SAP=4343.78;SAR=1999;SRF=0;SRP=12964.5;SRR=5969;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:56:52,4:52:1801:4:144:0,-3.5755,-149.085	0/1:34:29,5:29:1036:5:176:-5.91337,0,-83.3189	0/1:176:152,24:152:5423:24:860:-24.3052,0,-435.22	0/1:178:134,44:134:4781:44:1574:-88.0011,0,-376.863	0/1:43:36,7:36:1292:7:248:-9.55965,0,-103.639	0/1:19:16,3:16:567:3:108:-4.33027,0,-45.6412	0/1:47:37,10:37:1273:10:360:-18.529,0,-100.717	0/1:115:92,23:92:3276:23:824:-39.1404,0,-260.443	0/1:74:63,11:63:2224:11:387:-12.5943,0,-178.146	0/1:103:61,42:61:2179:42:1491:-102.225,0,-165.369	0/1:42:28,14:28:1004:14:487:-31.4415,0,-78.0326	0/1:85:68,17:68:2406:17:612:-29.5169,0,-191.206	0/1:88:65,23:65:2325:23:783:-44.0435,0,-183.017	0/1:57:31,26:31:1107:26:892:-63.0539,0,-82.7814	0/1:72:48,24:48:1716:24:856:-55.5457,0,-133.051	0/1:63:37,26:37:1324:26:923:-64.0861,0,-100.497	0/1:26:7,19:7:252:19:647:-50.5968,0,-15.2022	0/1:35:18,17:18:648:17:608:-43.8059,0,-48.1158	0/1:25:14,11:14:496:11:383:-27.1877,0,-37.4485	0/1:386:339,47:339:12084:47:1680:-35.0117,0,-971.217	0/1:143:113,30:113:4035:30:1055:-51.9807,0,-320.291	0/0:105:97,8:97:3464:8:284:0,-5.76589,-286.131	0/1:94:74,20:74:2660:20:697:-34.6448,0,-211.349	0/1:75:56,19:56:2007:19:680:-38.6158,0,-158.325	0/1:55:43,12:43:1531:12:417:-21.2263,0,-121.526	0/1:219:193,26:193:6892:26:914:-16.4501,0,-554.425	0/1:181:129,52:129:4615:52:1833:-110.294,0,-361.027	0/1:41:30,11:30:1072:11:383:-22.3109,0,-84.4502	0/1:196:175,21:175:6237:21:727:-6.58804,0,-502.424	0/1:111:79,32:79:2800:32:1139:-69.0139,0,-218.825	0/1:99:80,19:80:2839:19:676:-31.2556,0,-225.947	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.6326	0/1:3:2,1:2:72:1:32:-2.29259,0,-5.93363	0/1:5:3,2:3:108:2:72:-5.31438,0,-8.57002	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:214:118,96:118:4189:96:3367:-237.699,0,-312.77	0/1:160:100,60:100:3567:60:2136:-143.385,0,-273.073	0/1:30:21,9:21:747:9:300:-18.0195,0,-58.5234	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:95:83,12:83:2958:12:419:-9.39604,0,-237.476	0/1:25:20,5:20:708:5:180:-8.99669,0,-56.5198	0/1:111:91,20:91:3237:20:712:-30.78,0,-258.137	0/1:52:28,24:28:995:24:848:-60.7005,0,-74.2105	0/1:54:33,21:33:1171:21:748:-51.2056,0,-89.4411	0/1:89:73,16:73:2628:16:544:-22.363,0,-209.975	0/1:74:61,12:61:2179:12:420:-15.3871,0,-174.08	0/1:134:114,20:114:4054:20:716:-24.1575,0,-324.702	0/1:97:63,34:63:2252:34:1204:-78.7575,0,-173.743	0/1:87:78,9:78:2781:9:324:-3.21521,0,-224.34	0/1:184:117,67:117:4183:67:2367:-156.028,0,-321.262	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:121:99,22:99:3544:22:784:-34.2502,0,-282.744	0/1:39:29,10:29:1036:10:356:-20.5637,0,-81.8137	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:102:89,13:89:3147:13:452:-9.81859,0,-252.749	0/1:43:35,8:35:1248:8:288:-13.2731,0,-99.6806	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:14:12,2:12:432:2:72:-2.60511,0,-35.0068	0/1:51:38,13:38:1364:13:468:-27.0469,0,-107.708	0/1:116:93,23:93:3327:23:807:-37.7313,0,-264.728	0/1:3:2,1:2:68:1:36:-2.68833,0,-5.55462	0/1:265:186,79:186:6614:79:2819:-172.544,0,-515.569	0/1:166:104,62:104:3736:62:2199:-147.399,0,-286.468	0/1:41:29,12:29:1031:12:419:-25.1631,0,-80.7604	0/1:55:46,9:46:1638:9:324:-12.7683,0,-131.151	0/1:143:107,36:107:3827:36:1255:-69.7302,0,-301.579	0/1:134:117,17:117:4199:17:594:-13.204,0,-337.751	0/1:16:12,4:12:432:4:144:-8.34998,0,-34.4047	0/1:41:24,17:24:852:17:594:-41.3234,0,-64.6582	0/1:58:44,14:44:1572:14:504:-27.825,0,-124.312	0/1:25:22,3:22:784:3:108:-2.3736,0,-63.3582	0/1:111:78,33:78:2771:33:1159:-70.6975,0,-216.217	0/1:105:61,44:61:2192:44:1557:-107.991,0,-165.937	0/1:77:53,24:53:1870:24:864:-54.6658,0,-145.398	0/1:171:114,57:114:4071:57:2023:-130.004,0,-315.101	0/0:102:96,6:96:3384:6:216:0,-10.9643,-285.034	0/1:89:63,26:63:2264:26:915:-55.2488,0,-177.231	0/1:20:15,5:15:540:5:167:-9.3099,0,-42.9159	0/1:96:68,28:68:2436:28:996:-60.8145,0,-190.596	0/1:122:105,17:105:3709:17:604:-17.6528,0,-297.286	0/1:197:129,68:129:4611:68:2376:-153.895,0,-355.851	0/1:125:77,48:77:2709:48:1693:-114.495,0,-206.423	0/1:49:34,15:34:1220:15:510:-31.3657,0,-95.3563	0/1:35:29,6:29:1040:6:216:-9.21677,0,-83.3783	0/1:92:72,20:72:2575:20:703:-35.7954,0,-204.304	0/1:19:13,6:13:453:6:212:-13.4756,0,-35.3801	0/1:63:47,16:47:1654:16:576:-32.9806,0,-130.179	0/1:75:40,35:40:1440:35:1248:-89.075,0,-107.32	0/1:19:16,3:16:576:3:108:-4.34131,0,-46.4554	0/1:75:54,21:54:1932:21:725:-42.6694,0,-151.579	0/1:78:65,13:65:2306:13:444:-16.7359,0,-184.32	0/1:239:169,70:169:6035:70:2448:-147.566,0,-471.309	0/1:92:56,36:56:1999:36:1271:-86.4925,0,-152.488
chr09	17755003	.	G	A	21304.7	PASS	AB=0.259202;ABP=3943.47;AC=85;AF=0.452128;AN=188;AO=2046;CIGAR=1X;DP=8114;DPB=8114;DPRA=22.0609;EPP=4445.84;EPPR=13179.5;GTI=26;LEN=1;MEANALT=1;MQM=51.9658;MQMR=59.9807;NS=94;NUMALT=1;ODDS=0.356871;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73043;QR=217431;RO=6068;RPL=2046;RPP=4445.84;RPPR=13179.5;RPR=0;RUN=1;SAF=0;SAP=4445.84;SAR=2046;SRF=0;SRP=13179.5;SRR=6068;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:56:52,4:52:1840:4:144:0,-3.5755,-152.596	0/1:38:32,6:32:1148:6:216:-8.30162,0,-92.1907	0/1:180:153,27:153:5473:27:972:-32.7917,0,-438.503	0/1:181:137,44:137:4916:44:1584:-87.8148,0,-388.103	0/1:43:36,7:36:1273:7:252:-9.92161,0,-101.927	0/1:20:16,4:16:572:4:144:-7.25955,0,-45.7928	0/1:46:37,9:37:1328:9:324:-15.5978,0,-105.975	0/1:118:96,22:96:3430:22:792:-35.3628,0,-273.391	0/1:72:62,10:62:2213:10:356:-10.5451,0,-177.759	0/1:106:61,45:61:2184:45:1580:-108.882,0,-164.917	0/1:45:30,15:30:1076:15:536:-34.937,0,-83.6065	0/1:87:70,17:70:2516:17:612:-28.9067,0,-200.312	0/1:92:68,24:68:2436:24:864:-50.1002,0,-191.801	0/1:56:31,25:31:1112:25:882:-62.4676,0,-83.5337	0/1:72:48,24:48:1728:24:864:-56.2597,0,-134.131	0/1:64:37,27:37:1323:27:972:-68.0315,0,-100.105	0/1:27:9,18:9:324:18:648:-50.3148,0,-21.378	0/1:35:18,17:18:644:17:607:-43.6477,0,-47.7545	0/1:25:14,11:14:504:11:392:-27.9809,0,-38.1723	0/1:392:344,48:344:12265:48:1724:-37.1502,0,-985.686	0/1:145:115,30:115:4128:30:1080:-53.4989,0,-328.054	0/0:107:98,9:98:3512:9:320:0,-3.1371,-287.217	0/1:97:77,20:77:2760:20:720:-35.8064,0,-219.442	0/1:77:57,20:57:2040:20:716:-41.2074,0,-160.693	0/1:55:43,12:43:1548:12:432:-22.3417,0,-123.056	0/1:221:194,27:194:6949:27:964:-20.0455,0,-558.945	0/1:186:132,54:132:4725:54:1925:-117.042,0,-369.416	0/1:40:30,10:30:1080:10:356:-20.2964,0,-85.4721	0/1:195:174,21:174:6241:21:756:-9.27655,0,-503.08	0/1:111:81,30:81:2896:30:1080:-63.703,0,-227.462	0/1:103:84,19:84:2997:19:684:-30.7664,0,-238.954	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.6326	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.87105	0/1:5:3,2:3:108:2:72:-5.31438,0,-8.57002	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:220:121,99:121:4340:99:3541:-251.441,0,-324.548	0/1:167:104,63:104:3736:63:2249:-151.522,0,-286.167	0/1:32:21,11:21:756:11:377:-24.1808,0,-58.7343	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:99:86,13:86:3061:13:464:-12.2367,0,-244.889	0/1:26:20,6:20:712:6:215:-11.7348,0,-56.5799	0/1:114:93,21:93:3332:21:756:-33.8274,0,-265.78	0/1:53:29,24:29:1040:24:864:-61.8275,0,-77.9598	0/1:55:34,21:34:1220:21:756:-51.5356,0,-93.5502	0/1:91:74,17:74:2644:17:608:-27.4602,0,-210.813	0/1:77:65,12:65:2317:12:432:-15.577,0,-185.609	0/1:128:109,19:109:3908:19:684:-23.0887,0,-313.379	0/1:96:63,33:63:2249:33:1169:-75.9037,0,-173.773	0/1:90:81,9:81:2908:9:324:-2.31212,0,-234.862	0/1:186:119,67:119:4264:67:2362:-155.272,0,-327.946	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:125:102,23:102:3672:23:816:-35.9331,0,-292.895	0/1:39:29,10:29:1014:10:360:-20.9218,0,-79.8273	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:104:90,14:90:3232:14:489:-12.5298,0,-259.789	0/1:42:34,8:34:1212:8:284:-13.2138,0,-96.7431	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:15:13,2:13:464:2:72:-2.30408,0,-37.5821	0/1:52:39,13:39:1396:13:468:-26.7459,0,-110.286	0/1:117:94,23:94:3376:23:820:-38.5945,0,-268.834	0/1:3:2,1:2:72:1:36:-2.68833,0,-5.93363	0/1:274:190,84:190:6824:84:2997:-185.799,0,-531.746	0/1:170:107,63:107:3852:63:2235:-149.474,0,-295.699	0/1:44:32,12:32:1148:12:432:-25.6372,0,-90.3822	0/1:55:46,9:46:1656:9:320:-12.4085,0,-132.772	0/1:147:109,38:109:3890:38:1330:-74.8757,0,-306.04	0/1:137:119,18:119:4264:18:648:-17.1503,0,-342.695	0/1:16:12,4:12:432:4:144:-8.34998,0,-34.4047	0/1:42:25,17:25:896:17:612:-42.6377,0,-68.3171	0/1:57:44,13:44:1584:13:464:-24.5363,0,-125.693	0/1:27:24,3:24:864:3:108:-1.77154,0,-69.9548	0/1:114:78,36:78:2796:36:1292:-81.6132,0,-217.562	0/1:105:62,43:62:2228:43:1508:-103.718,0,-169.176	0/1:79:53,26:53:1896:26:932:-60.1723,0,-147.137	0/1:173:115,58:115:4140:58:2072:-133.951,0,-320.703	0/0:102:97,5:97:3484:5:180:0,-14.1946,-297.26	0/1:92:63,29:63:2264:29:1044:-65.791,0,-176.328	0/1:20:15,5:15:540:5:180:-10.4935,0,-42.9159	0/1:97:68,29:68:2440:29:1040:-64.4629,0,-190.655	0/1:123:105,18:105:3772:18:648:-21.2951,0,-302.651	0/1:196:129,67:129:4640:67:2381:-154.684,0,-358.758	0/1:126:76,50:76:2732:50:1770:-121.03,0,-208.192	0/1:49:34,15:34:1200:15:525:-32.7413,0,-93.5524	0/1:36:29,7:29:1044:7:252:-12.148,0,-83.4377	0/1:97:76,21:76:2728:21:756:-39.0387,0,-216.563	0/1:19:13,6:13:468:6:216:-13.8364,0,-36.7401	0/1:66:51,15:51:1832:15:521:-27.1398,0,-145.293	0/1:77:42,35:42:1499:35:1259:-89.4811,0,-112.025	0/1:20:16,4:16:576:4:144:-7.27646,0,-46.1544	0/1:77:56,21:56:2012:21:744:-43.6678,0,-158.174	0/1:78:65,13:65:2336:13:464:-18.5432,0,-187.019	0/1:242:170,72:170:6096:72:2569:-157.214,0,-475.891	0/1:96:56,40:56:2016:40:1432:-99.6765,0,-152.814
chr09	17831398	.	TC	CT,TT	147040	PASS	AB=0.46808,0.530792;ABP=42.2413,39.5178;AC=124,60;AF=0.673913,0.326087;AN=184;AO=4610,2380;CIGAR=2X,1M1X;DP=6997;DPB=6997.5;DPRA=11.759,1.08493;EPP=10013.5,5171.11;EPPR=9.52472;GTI=1;LEN=2,1;MEANALT=1.69663,1.98361;MQM=59.9931,59.9769;MQMR=60;NS=92;NUMALT=2;ODDS=1.4879;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=36,0;PQR=0;PRO=0;QA=164210,85244;QR=108;RO=3;RPL=4610,2380;RPP=10013.5,5171.11;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10013.5,5171.11;SAR=4610,2380;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:10:0,2,8:0:0:2,8:72,288:-29.734,-23.8592,-23.2571,-6.23466,0,-3.82642	1/1:77:0,77,0:0:0:77,0:2736,0:-246.481,-23.1793,0,-246.481,-23.1793,-246.481	1/1:79:0,79,0:0:0:79,0:2810,0:-253.139,-23.7814,0,-253.139,-23.7814,-253.139	1/1:145:0,145,0:0:0:145,0:5170,0:-465.439,-43.6494,0,-465.439,-43.6494,-465.439	1/2:22:0,4,18:0:0:4,18:144,644:-64.6221,-52.8721,-51.6679,-12.1095,0,-6.69096	1/2:23:0,11,12:0:0:11,12:394,428:-67.3793,-35.2464,-31.9351,-32.4902,0,-28.8778	1/1:64:0,63,1:0:0:63,1:2215,36:-199.252,-18.9649,0,-196.315,-15.6676,-196.014	1/2:92:0,32,60:0:0:32,60:1146,2148:-268.985,-175.526,-165.893,-93.817,0,-75.7552	1/2:43:0,18,25:0:0:18,25:633,900:-125.317,-73.7953,-68.3767,-51.8771,0,-44.3513	1/1:109:0,109,0:0:0:109,0:3910,0:-352.092,-32.8123,0,-352.092,-32.8123,-352.092	1/2:59:0,34,25:0:0:34,25:1211,900:-172.497,-73.7953,-63.5602,-99.0602,0,-91.5345	1/1:70:0,70,0:0:0:70,0:2479,0:-223.363,-21.0721,0,-223.363,-21.0721,-223.363	1/2:72:0,39,33:0:0:39,33:1385,1188:-210.144,-97.2946,-85.5544,-113.207,0,-103.273	1/2:100:0,49,51:0:0:49,51:1738,1828:-291.044,-149.448,-134.698,-141.952,0,-126.6	1/2:69:0,32,37:0:0:32,37:1152,1328:-202.682,-108.684,-99.0512,-94.3572,0,-83.2191	1/2:53:0,25,28:0:0:25,28:900,1008:-156.043,-82.6075,-75.0818,-73.7953,0,-65.3664	1/2:93:0,49,44:0:0:49,44:1762,1584:-273.349,-129.606,-114.856,-144.103,0,-130.857	1/2:105:2,46,57:2:72:46,57:1648,2052:-295.359,-161.558,-153.585,-128.527,0,-117.243	1/1:35:0,35,0:0:0:35,0:1252,0:-112.985,-10.5361,0,-112.985,-10.5361,-112.985	1/2:104:0,30,74:0:0:30,74:1067,2652:-303.232,-216.279,-207.248,-87.3095,0,-65.0333	1/2:135:0,62,73:0:0:62,73:2228,2624:-396.193,-214.432,-195.768,-182.12,0,-160.145	2/2:13:0,0,13:0:0:0,13:0,464:-42.0975,-42.0975,-42.0975,-3.91339,-3.91339,0	1/1:50:0,50,0:0:0:50,0:1779,0:-160.391,-15.0515,0,-160.391,-15.0515,-160.391	1/2:80:0,42,38:0:0:42,38:1506,1364:-234.455,-111.622,-98.9783,-123.192,0,-111.753	1/1:26:0,26,0:0:0:26,0:932,0:-84.1991,-7.82678,0,-84.1991,-7.82678,-84.1991	1/2:189:0,91,97:0:0:91,97:3213,3472:-544.774,-283.132,-255.738,-261.637,0,-232.437	1/2:130:0,68,62:0:0:68,62:2419,2224:-378.898,-181.76,-161.29,-197.495,0,-178.831	1/2:31:0,11,20:0:0:11,20:396,701:-89.7061,-57.3911,-54.0798,-32.6714,0,-26.6508	1/2:161:0,67,94:0:0:67,94:2396,3340:-467.894,-272.523,-252.354,-195.728,0,-167.431	1/2:100:0,58,42:0:0:58,42:2072,1508:-292.304,-123.371,-105.911,-169.291,0,-156.648	1/2:121:0,65,56:0:0:65,56:2306,1993:-350.661,-162.784,-143.217,-188.232,0,-171.374	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	2/2:6:0,0,6:0:0:0,6:0,216:-19.7905,-19.7905,-19.7905,-1.80618,-1.80618,0	1/1:7:0,7,0:0:0:7,0:242,0:-22.1166,-2.10721,0,-22.1166,-2.10721,-22.1166	1/2:232:0,112,120:0:0:112,120:4009,4300:-677.974,-351.053,-317.338,-327.279,0,-291.155	1/2:155:0,75,80:0:0:75,80:2672,2880:-453.014,-235.224,-212.646,-218.148,0,-194.066	1/2:82:0,33,49:0:0:33,49:1175,1760:-239.698,-143.933,-133.999,-96.1221,0,-81.3717	.:.:.:.:.:.:.:.	1/1:92:0,92,0:0:0:92,0:3236,0:-291.461,-27.6948,0,-291.461,-27.6948,-291.461	1/1:34:0,34,0:0:0:34,0:1196,0:-107.945,-10.235,0,-107.945,-10.235,-107.945	1/2:75:0,35,40:0:0:35,40:1245,1432:-218.597,-117.136,-106.6,-101.817,0,-89.776	1/2:112:0,50,62:0:0:50,62:1780,2224:-326.835,-181.76,-166.709,-145.431,0,-126.768	1/2:73:0,36,37:0:0:36,37:1277,1328:-212.722,-108.684,-97.847,-104.394,0,-93.2562	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/2:53:0,22,31:0:0:22,31:790,1116:-155.863,-91.4198,-84.7971,-64.8027,0,-55.4707	1/1:100:0,98,2:0:0:98,2:3469,72:-312.061,-29.5009,0,-306.186,-23.2663,-305.584	1/1:71:0,71,0:0:0:71,0:2506,0:-225.791,-21.3731,0,-225.791,-21.3731,-225.791	1/2:160:0,64,96:0:0:64,96:2288,3440:-467.472,-280.914,-261.648,-186.916,0,-158.017	1/1:68:0,68,0:0:0:68,0:2416,0:-217.332,-20.47,0,-217.332,-20.47,-217.332	1/2:8:0,3,5:0:0:3,5:106,180:-23.6772,-15.0469,-14.1438,-8.98601,0,-7.48086	1/1:104:0,104,0:0:0:104,0:3702,0:-333.381,-31.3071,0,-333.381,-31.3071,-333.381	1/1:28:0,28,0:0:0:28,0:996,0:-89.9545,-8.42884,0,-89.9545,-8.42884,-89.9545	1/2:11:0,3,8:0:0:3,8:108,284:-32.3087,-23.4951,-22.592,-9.17208,0,-6.76384	1/2:84:0,28,56:0:0:28,56:1002,2012:-246.204,-164.495,-156.067,-82.0671,0,-65.2094	1/2:37:0,19,18:0:0:19,18:680,648:-108.684,-53.2333,-47.5138,-55.8098,0,-50.3913	2/2:1:0,0,1:0:0: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chr09	17988479	.	A	C	76493.5	PASS	AB=0.321241;ABP=1380.23;AC=126;AF=0.677419;AN=186;AO=4050;CIGAR=1X;DP=7525;DPB=7525;DPRA=0;EPP=8797.47;EPPR=7529.34;GTI=10;LEN=1;MEANALT=1.05376;MQM=59.5519;MQMR=59.9173;NS=93;NUMALT=1;ODDS=2.75848;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143678;QR=121954;RO=3470;RPL=4041;RPP=8719.47;RPPR=12.9453;RPR=9;RUN=1;SAF=4041;SAP=8719.47;SAR=9;SRF=1799;SRP=13.2632;SRR=1671;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:22,1:22:763:1:36:0,-3.32541,-65.3903	1/1:55:0,55:0:0:55:1940:-174.866,-16.5567,0	1/1:139:0,139:0:0:139:4948:-445.418,-41.8432,0	1/1:121:0,121:0:0:121:4298:-386.974,-36.4246,0	0/0:16:15,1:15:527:1:36:0,-1.23343,-44.1771	0/1:32:22,10:22:784:10:356:-22.1053,0,-61.251	1/1:91:3,88:3:108:88:3102:-269.285,-17.3186,0	0/1:156:105,51:105:3728:51:1808:-116.021,0,-288.747	0/1:121:83,38:83:2896:38:1364:-86.6361,0,-224.454	1/1:72:0,72:0:0:72:2559:-230.552,-21.6742,0	0/1:143:101,42:101:3491:42:1500:-92.2403,0,-271.345	1/1:111:0,111:0:0:111:3938:-354.545,-33.4143,0	0/1:108:69,39:69:2451:39:1374:-91.4163,0,-188.334	0/1:169:106,63:106:3682:63:2222:-149.275,0,-280.712	0/1:111:76,35:76:2682:35:1240:-78.485,0,-208.212	0/1:116:70,46:70:2470:46:1639:-112.877,0,-187.579	0/1:91:60,31:60:2118:31:1112:-72.9013,0,-163.494	0/1:76:47,29:47:1668:29:1031:-70.2153,0,-127.529	1/1:47:0,47:0:0:47:1646:-148.401,-14.1484,0	0/1:125:77,48:77:2701:48:1684:-114.212,0,-205.707	0/1:164:113,51:113:3953:51:1816:-114.33,0,-306.6	0/1:43:38,5:38:1332:5:180:-3.60778,0,-107.235	1/1:70:0,70:0:0:70:2508:-225.943,-21.0721,0	0/1:72:53,19:53:1839:19:678:-39.6623,0,-144.108	1/1:5:0,5:0:0:5:180:-16.5381,-1.50515,0	0/1:148:120,28:120:4201:28:991:-44.9469,0,-333.217	0/1:106:73,33:73:2553:33:1157:-72.5235,0,-198.112	0/1:56:34,22:34:1208:22:788:-54.3871,0,-92.1684	0/1:159:108,51:108:3784:51:1805:-114.864,0,-292.9	0/1:94:52,42:52:1801:42:1485:-105.62,0,-134.068	0/1:114:67,47:67:2364:47:1668:-116.087,0,-178.702	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:10:8,2:8:275:2:72:-3.82158,0,-22.0732	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/1:17:7,10:7:240:10:356:-27.2637,0,-16.8172	0/1:185:128,57:128:4532:57:1974:-122.23,0,-352.359	1/1:48:0,48:0:0:48:1708:-153.978,-14.4494,0	0/1:95:58,37:58:2035:37:1324:-90.8141,0,-154.768	.:.:.:.:.:.:.:.	1/1:110:3,106:3:100:106:3736:-327.127,-23.7226,0	1/1:44:0,44:0:0:44:1563:-140.938,-13.2453,0	0/1:86:74,12:74:2602:12:428:-12.9656,0,-208.533	0/1:69:50,19:50:1772:19:671:-39.9447,0,-138.992	0/1:85:59,25:59:2048:25:888:-54.7035,0,-159.037	1/1:45:0,45:0:0:45:1612:-145.369,-13.5464,0	0/1:65:50,15:50:1768:15:532:-28.6297,0,-139.836	1/1:75:0,75:0:0:75:2659:-239.499,-22.5773,0	1/1:23:0,23:0:0:23:828:-74.8394,-6.92369,0	0/1:120:90,30:90:3163:30:1072:-60.6689,0,-248.775	1/1:63:0,63:0:0:63:2223:-200.331,-18.9649,0	0/1:18:11,7:11:388:7:248:-17.2457,0,-29.8388	1/1:70:0,70:0:0:70:2512:-226.24,-21.0721,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.4416	0/1:81:50,31:50:1740:31:1103:-75.1856,0,-132.498	0/1:25:22,3:22:772:3:104:-2.17706,0,-62.2732	0/1:17:12,5:12:428:5:176:-11.0675,0,-33.7413	0/1:20:16,4:16:564:4:144:-7.29302,0,-45.0697	0/1:84:48,36:48:1682:36:1266:-88.915,0,-126.378	0/1:152:97,55:97:3394:55:1954:-130.373,0,-259.922	1/1:2:0,2:0:0:2:68:-6.45672,-0.60206,0	0/1:162:107,55:107:3791:55:1946:-126.536,0,-292.624	0/1:153:88,65:88:3111:65:2297:-160.915,0,-234.162	0/1:60:38,22:38:1311:22:792:-53.5265,0,-100.224	1/1:34:0,34:0:0:34:1205:-108.745,-10.235,0	0/1:96:69,27:69:2410:27:959:-57.7265,0,-188.241	0/1:173:142,31:142:5023:31:1112:-48.3085,0,-399.871	1/1:68:1,67:1:36:67:2377:-210.535,-16.8718,0	1/1:78:0,78:0:0:78:2788:-251.116,-23.4803,0	0/1:73:46,27:46:1631:27:948:-63.5843,0,-125.09	0/1:29:18,11:18:628:11:396:-27.2529,0,-48.1156	1/1:49:0,49:0:0:49:1705:-153.709,-14.7505,0	0/1:96:64,32:64:2260:32:1119:-72.0866,0,-174.763	1/1:121:0,121:0:0:121:4283:-385.629,-36.4246,0	1/1:121:0,121:0:0:121:4289:-386.152,-36.4246,0	0/0:53:51,2:51:1811:2:68:0,-9.49688,-155.875	1/1:106:2,104:2:72:104:3718:-327.925,-25.0725,0	0/1:35:25,10:25:888:10:356:-21.8313,0,-69.703	1/1:57:1,56:1:36:56:1991:-175.699,-13.5604,0	0/1:131:82,49:82:2859:49:1760:-119.135,0,-218.114	1/1:107:0,107:0:0:107:3810:-343.052,-32.2102,0	1/1:48:0,48:0:0:48:1687:-152.109,-14.4494,0	1/1:86:1,85:1:36:85:3034:-269.69,-22.2903,0	0/1:73:47,26:47:1646:26:924:-61.5015,0,-126.451	1/1:126:5,121:5:180:121:4254:-366.447,-21.3777,0	0/1:28:20,8:20:692:8:273:-16.4426,0,-54.1725	0/1:100:68,32:68:2403:32:1144:-73.1502,0,-186.368	1/1:71:0,71:0:0:71:2539:-228.671,-21.3731,0	0/1:104:70,34:70:2483:34:1220:-78.7905,0,-192.408	0/1:190:135,54:135:4738:54:1917:-115.546,0,-369.326	0/1:117:88,29:88:3126:29:1012:-56.168,0,-246.346	1/1:37:0,36:0:0:36:1276:-114.553,-10.8371,0	1/1:118:0,117:0:0:117:4121:-370.666,-35.2205,0
chr09	17988488	.	C	T	75180.9	PASS	AB=0.318826;ABP=1411.43;AC=126;AF=0.677419;AN=186;AO=4018;CIGAR=1X;DP=7497;DPB=7497;DPRA=0;EPP=8727.99;EPPR=7548.88;GTI=10;LEN=1;MEANALT=1.04301;MQM=59.5781;MQMR=59.9482;NS=93;NUMALT=1;ODDS=3.32284;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142347;QR=120939;RO=3475;RPL=4015;RPP=8701.95;RPPR=3.01092;RPR=3;RUN=1;SAF=4015;SAP=8701.95;SAR=3;SRF=1737;SRP=3.01092;SRR=1738;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:22,1:22:760:1:36:0,-3.32541,-65.1176	1/1:55:0,55:0:0:55:1968:-177.379,-16.5567,0	1/1:135:0,135:0:0:135:4731:-425.917,-40.6391,0	1/1:121:0,121:0:0:121:4296:-386.789,-36.4246,0	0/0:16:14,1:14:487:1:36:0,-1.29147,-40.5762	0/1:33:23,10:23:777:10:350:-21.5247,0,-60.3052	1/1:94:3,91:3:108:91:3245:-282.148,-18.2217,0	0/1:156:105,50:105:3614:50:1796:-115.011,0,-278.554	0/1:122:84,38:84:2897:38:1340:-84.1716,0,-224.235	1/1:69:0,69:0:0:69:2425:-218.5,-20.7711,0	0/1:142:100,42:100:3465:42:1495:-92.0906,0,-269.308	1/1:116:0,116:0:0:116:4069:-366.338,-34.9195,0	0/1:109:70,39:70:2360:39:1392:-92.7246,0,-179.842	0/1:166:104,62:104:3605:62:2174:-145.932,0,-274.688	0/1:113:78,35:78:2702:35:1241:-77.9577,0,-209.407	0/1:111:65,46:65:2263:46:1618:-112.491,0,-170.517	0/1:90:60,30:60:1978:30:1061:-68.68,0,-151.194	0/1:71:45,26:45:1578:26:928:-62.456,0,-120.936	1/1:46:0,46:0:0:46:1642:-148.058,-13.8474,0	0/1:126:76,50:76:2702:50:1772:-121.828,0,-205.494	0/1:161:112,49:112:3942:49:1737:-108.138,0,-306.506	0/1:44:39,5:39:1364:5:172:-2.57265,0,-109.81	1/1:70:0,70:0:0:70:2498:-225.05,-21.0721,0	0/1:74:55,19:55:1933:19:680:-39.244,0,-151.964	1/1:6:0,6:0:0:6:216:-19.7766,-1.80618,0	0/1:147:120,27:120:4210:27:946:-41.1987,0,-334.817	0/1:105:72,33:72:2507:33:1169:-73.9056,0,-194.271	0/1:56:31,24:31:1077:24:837:-58.7291,0,-80.3202	0/1:153:104,49:104:3580:49:1727:-109.654,0,-276.263	0/1:91:51,40:51:1815:40:1408:-99.5977,0,-136.237	0/1:110:65,45:65:2311:45:1620:-112.972,0,-175.137	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:10:8,2:8:275:2:72:-3.82158,0,-22.0732	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:180:125,55:125:4322:55:1917:-118.551,0,-334.975	1/1:47:0,47:0:0:47:1621:-146.158,-14.1484,0	0/1:97:60,37:60:2070:37:1311:-89.0518,0,-157.366	.:.:.:.:.:.:.:.	1/1:110:3,107:3:104:107:3772:-329.959,-23.4105,0	1/1:45:0,45:0:0:45:1590:-143.363,-13.5464,0	0/1:88:76,12:76:2645:12:419:-11.5474,0,-211.668	0/1:70:51,19:51:1760:19:676:-40.0959,0,-137.606	0/1:85:60,25:60:2079:25:888:-54.6468,0,-161.766	1/1:47:0,47:0:0:47:1675:-151.036,-14.1484,0	0/1:64:50,14:50:1738:14:504:-26.4158,0,-137.434	1/1:72:0,72:0:0:72:2557:-230.339,-21.6742,0	1/1:23:0,23:0:0:23:824:-74.481,-6.92369,0	0/1:118:87,31:87:3036:31:1116:-65.2302,0,-237.946	1/1:62:4,58:4:136:58:2057:-172.822,-6.08832,0	0/1:19:12,7:12:416:7:243:-16.4879,0,-32.0519	1/1:70:0,70:0:0:70:2516:-226.597,-21.0721,0	1/1:48:0,48:0:0:48:1709:-154.094,-14.4494,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.56158	0/1:83:51,32:51:1813:32:1144:-78.2742,0,-138.459	0/1:27:24,3:24:835:3:108:-1.94736,0,-67.3378	0/1:17:12,5:12:409:5:180:-11.4346,0,-32.0179	0/1:19:15,4:15:540:4:129:-6.20809,0,-43.217	0/1:84:48,36:48:1677:36:1279:-90.0837,0,-125.925	0/1:156:100,56:100:3454:56:2004:-133.668,0,-264.116	1/1:2:0,2:0:0:2:72:-6.83426,-0.60206,0	0/1:163:108,55:108:3781:55:1954:-126.569,0,-291.42	0/1:156:92,64:92:3193:64:2271:-157.671,0,-240.631	0/1:65:43,22:43:1490:22:781:-51.0157,0,-114.825	1/1:34:0,34:0:0:34:1212:-109.377,-10.235,0	0/1:92:68,24:68:2383:24:864:-50.3878,0,-187.029	0/1:167:136,31:136:4796:31:1103:-49.3031,0,-381.256	1/1:65:1,64:1:36:64:2268:-200.757,-15.9687,0	1/1:77:0,77:0:0:77:2712:-244.279,-23.1793,0	0/1:74:48,26:48:1648:26:919:-60.6752,0,-126.316	0/1:28:17,11:17:594:11:387:-26.7371,0,-45.3567	1/1:49:0,49:0:0:49:1714:-154.522,-14.7505,0	0/1:95:65,30:65:2298:30:1031:-64.4852,0,-178.483	1/1:119:1,118:1:36:118:4189:-373.555,-32.2243,0	1/1:122:1,121:1:36:121:4274:-381.204,-33.1274,0	0/0:58:56,2:56:1968:2:72:0,-10.623,-170.556	1/1:105:2,103:2:72:103:3656:-322.361,-24.7714,0	0/1:36:25,11:25:880:11:396:-25.1318,0,-68.6806	1/1:61:1,60:1:36:60:2126:-187.842,-14.7646,0	0/1:134:83,50:83:2950:50:1777:-119.788,0,-225.426	1/1:107:0,107:0:0:107:3791:-341.354,-32.2102,0	1/1:46:0,46:0:0:46:1637:-147.61,-13.8474,0	1/1:85:1,84:1:36:84:2962:-263.212,-21.9893,0	0/1:72:46,26:46:1591:26:923:-61.7103,0,-121.805	1/1:128:4,124:4:136:124:4361:-380.046,-25.9563,0	0/1:26:19,7:19:654:7:248:-14.8374,0,-51.3533	0/1:99:68,31:68:2331:31:1103:-69.7615,0,-180.246	1/1:71:0,71:0:0:71:2522:-227.197,-21.3731,0	0/1:105:72,33:72:2498:33:1166:-73.6322,0,-193.462	0/1:189:134,55:134:4622:55:1959:-119.686,0,-359.255	0/1:117:89,28:89:3134:28:1004:-55.4554,0,-247.068	1/1:34:0,34:0:0:34:1215:-109.651,-10.235,0	1/1:115:0,115:0:0:115:4098:-368.976,-34.6185,0
chr09	18041595	.	G	A	24384.7	PASS	AB=0.444286;ABP=97.3763;AC=56;AF=0.297872;AN=188;AO=1566;CIGAR=1X;DP=6179;DPB=6179;DPRA=1.01378;EPP=3403.54;EPPR=10000.5;GTI=3;LEN=1;MEANALT=1.01639;MQM=60;MQMR=59.9928;NS=94;NUMALT=1;ODDS=1.51551;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55538;QR=164241;RO=4612;RPL=0;RPP=3403.54;RPPR=10000.5;RPR=1566;RUN=1;SAF=0;SAP=3403.54;SAR=1566;SRF=0;SRP=10017.8;SRR=4612;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:6,7:6:201:7:234:-17.4726,0,-14.5037	0/0:109:109,0:109:3887:0:0:0,-32.8123,-350.025	0/0:70:69,1:69:2467:1:36:0,-17.4738,-218.685	0/0:101:101,0:101:3604:0:0:0,-30.404,-324.565	0/1:30:22,8:22:788:8:288:-17.2365,0,-62.2139	0/1:29:18,11:18:644:11:377:-25.5281,0,-49.5607	0/0:105:105,0:105:3753:0:0:0,-31.6081,-337.969	0/1:49:31,18:31:1112:18:629:-42.1833,0,-85.6409	0/1:46:30,16:30:1080:16:572:-37.966,0,-83.6659	0/0:75:75,0:75:2665:0:0:0,-22.5772,-240.095	0/1:67:40,27:40:1408:27:964:-66.9078,0,-106.845	0/0:64:64,0:64:2274:0:0:0,-19.2659,-204.921	0/1:58:32,26:32:1144:26:932:-66.7391,0,-85.8098	0/1:70:38,32:38:1352:32:1131:-81.0257,0,-100.908	0/1:69:42,27:42:1503:27:956:-65.5847,0,-114.793	0/1:42:24,18:24:856:18:625:-43.9292,0,-64.7178	0/1:63:29,34:29:1036:34:1224:-91.5022,0,-74.589	0/1:53:24,28:24:852:28:1008:-75.023,0,-60.9872	0/0:51:51,0:51:1827:0:0:0,-15.3525,-164.71	0/1:197:95,102:95:3387:102:3634:-267.962,0,-245.743	0/1:100:64,36:64:2291:36:1263:-83.866,0,-176.348	0/1:61:31,30:31:1091:30:1072:-78.4296,0,-80.1359	0/0:52:50,2:50:1775:2:72:0,-8.81684,-153.196	0/1:59:29,30:29:1036:30:1043:-76.4153,0,-75.7931	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:148:91,57:91:3237:57:2030:-138.419,0,-246.999	0/1:91:53,38:53:1892:38:1355:-94.856,0,-143.165	0/1:33:18,15:18:644:15:528:-37.9174,0,-48.3566	0/1:120:55,65:55:1972:65:2316:-172.577,0,-141.631	0/1:95:55,40:55:1931:40:1429:-100.309,0,-145.466	0/1:71:41,30:41:1449:30:1065:-74.7866,0,-109.331	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:173:85,88:85:3048:88:3129:-229.758,0,-222.471	0/0:211:211,0:211:7456:0:0:0,-63.5173,-671.087	0/1:87:52,35:52:1857:35:1247:-86.3445,0,-141.218	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:109:106,3:106:3759:3:104:0,-23.1095,-328.807	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:79:47,32:47:1688:32:1109:-76.3307,0,-128.426	0/1:54:24,30:24:864:30:1063:-79.7252,0,-61.8269	0/1:57:33,24:33:1161:24:852:-59.8417,0,-87.636	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.832	0/1:68:37,31:37:1298:31:1100:-78.8402,0,-96.6496	0/0:76:76,0:76:2682:0:0:0,-22.8783,-241.623	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:72:40,32:40:1436:32:1128:-80.1522,0,-107.864	0/0:125:125,0:125:4459:0:0:0,-37.6287,-401.481	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:127:127,0:127:4546:0:0:0,-38.2308,-409.305	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/1:76:47,29:47:1649:29:1040:-71.0361,0,-125.817	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:34:29,5:29:1040:5:180:-6.31705,0,-83.6793	0/1:107:52,55:52:1842:55:1931:-141.856,0,-133.849	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:83:44,39:44:1563:39:1400:-101.314,0,-115.975	0/1:123:75,48:75:2666:48:1700:-116.257,0,-203.159	0/1:61:40,21:40:1402:21:728:-47.4749,0,-108.11	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.942	0/1:104:56,48:56:2000:48:1712:-123.059,0,-148.967	0/1:72:29,43:29:1040:43:1526:-115.957,0,-72.2402	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:65:65,0:65:2318:0:0:0,-19.5669,-208.879	0/1:63:28,35:28:999:35:1235:-92.4886,0,-71.2596	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/0:81:81,0:81:2884:0:0:0,-24.3834,-259.769	0/1:23:14,9:14:489:9:324:-22.5822,0,-37.4152	0/0:97:97,0:97:3440:0:0:0,-29.1999,-309.813	0/0:102:102,0:102:3649:0:0:0,-30.7051,-328.613	0/1:64:41,23:41:1455:23:824:-55.2174,0,-111.979	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:46:46,0:46:1625:0:0:0,-13.8474,-146.537	0/1:52:37,15:37:1324:15:525:-31.9245,0,-103.809	0/0:68:67,1:67:2391:1:36:0,-16.8718,-211.849	0/0:96:95,1:95:3380:1:36:0,-25.3006,-300.789	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.451	0/1:72:42,30:42:1504:30:1052:-73.3144,0,-113.98	0/0:133:131,2:131:4675:2:72:0,-33.2003,-414.073	0/1:43:26,17:26:919:17:612:-42.4691,0,-70.0819	0/1:69:32,37:32:1144:37:1287:-95.3589,0,-82.4984	0/0:73:73,0:73:2577:0:0:0,-21.9752,-232.179	0/1:57:35,22:35:1243:22:788:-54.0861,0,-95.0152	0/1:119:75,44:75:2675:44:1539:-102.978,0,-205.173	0/1:57:17,40:17:597:40:1436:-112.379,0,-36.8974	0/0:54:54,0:54:1903:0:0:0,-16.2556,-171.544	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528
chr09	18231462	.	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chr09	18271224	.	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chr09	18271241	.	CTAGCTATC	CTAGTTATC	47690.1	PASS	AB=0.536972;ABP=63.7045;AC=57;AF=0.303191;AN=188;AO=2755;CIGAR=4M1X4M;DP=8505;DPB=8505.22;DPRA=1.17938;EPP=5873.03;EPPR=12017.2;GTI=3;LEN=1;MEANALT=1.79032;MQM=59.9833;MQMR=60;NS=94;NUMALT=1;ODDS=1.39983;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97980;QR=200197;RO=5660;RPL=2742;RPP=5873.03;RPPR=12025.8;RPR=13;RUN=1;SAF=0;SAP=5985.42;SAR=2755;SRF=1;SRP=12284.9;SRR=5659;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:22,32:22:762:32:1152:-87.3781,0,-52.2885	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.664	0/0:188:187,0:187:6591:0:0:0,-56.2926,-592.926	0/0:194:192,1:192:6799:1:36:0,-54.7854,-608.468	0/1:50:25,21:25:890:21:741:-52.8055,0,-66.2131	0/1:43:17,26:17:605:26:921:-70.2605,0,-41.8367	0/0:94:93,0:93:3286:0:0:0,-27.9958,-295.751	0/1:147:66,81:66:2317:81:2889:-215.994,0,-164.54	0/1:119:62,56:62:2186:56:2004:-144.88,0,-161.253	0/0:58:58,0:58:2025:0:0:0,-17.4597,-182.522	0/1:92:40,49:40:1429:49:1741:-129.829,0,-101.769	0/0:108:107,0:107:3754:0:0:0,-32.2102,-337.704	0/1:82:40,42:40:1405:42:1497:-110.338,0,-102.063	0/1:90:43,47:43:1514:47:1684:-124.754,0,-109.461	0/1:65:31,33:31:1106:33:1184:-87.2426,0,-80.2258	0/1:81:39,42:39:1390:42:1455:-106.491,0,-100.656	0/1:50:24,26:24:848:26:936:-69.508,0,-61.5875	0/1:34:14,20:14:500:20:716:-54.5327,0,-35.1013	0/0:41:40,0:40:1425:0:0:0,-12.0412,-128.188	0/1:183:82,98:82:2880:98:3464:-257.459,0,-204.929	0/0:114:114,0:114:4000:0:0:0,-34.3174,-360.197	0/1:100:41,59:41:1451:59:2085:-157.816,0,-100.783	0/0:119:117,2:117:4136:2:72:0,-28.9858,-365.593	0/1:56:36,20:36:1272:20:716:-47.91,0,-97.9257	0/0:81:79,0:79:2792:0:0:0,-23.7814,-251.162	0/1:262:103,157:103:3627:157:5575:-423.313,0,-248.085	0/1:245:106,137:106:3771:137:4920:-369.449,0,-266.093	0/1:27:16,11:16:569:11:392:-27.4922,0,-43.4147	0/1:269:147,121:147:5211:121:4306:-306.675,0,-388.099	0/1:105:68,37:68:2380:37:1317:-87.2217,0,-182.852	0/1:101:49,52:49:1731:52:1868:-137.995,0,-125.671	0/0:4:3,0:3:108:0:0:0,-0.90309,-9.71534	0/1:15:3,12:3:108:12:402:-31.9838,0,-5.55972	0/0:3:1,0:1:36:0:0:0,-0.30103,-3.23845	0/1:14:6,8:6:215:8:288:-22.053,0,-15.4848	0/1:38:20,17:20:699:17:597:-42.5964,0,-51.7737	0/1:175:84,89:84:2980:89:3170:-233.103,0,-216.015	0/0:75:75,0:75:2661:0:0:0,-22.5772,-239.738	0/1:65:39,25:39:1387:25:892:-60.9741,0,-105.503	0/0:11:10,0:10:350:0:0:0,-3.0103,-31.4779	0/0:99:98,1:98:3480:1:36:0,-26.2037,-309.816	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.012	0/1:161:83,77:83:2945:77:2749:-199.215,0,-216.851	0/1:63:33,29:33:1166:29:1006:-71.9295,0,-86.3293	0/1:54:24,28:24:845:28:1004:-74.6626,0,-60.356	0/0:79:79,0:79:2790:0:0:0,-23.7814,-251.343	0/1:100:37,62:37:1306:62:2224:-170.262,0,-87.6792	0/0:174:170,1:170:5917:1:36:0,-48.2377,-529.058	0/0:59:56,0:56:1987:0:0:0,-16.8577,-178.793	0/1:166:67,96:67:2395:96:3418:-258.388,0,-166.409	0/0:52:52,0:52:1857:0:0:0,-15.6536,-167.41	0/1:9:5,4:5:177:4:144:-10.6043,0,-13.5676	0/0:91:91,0:91:3235:0:0:0,-27.3937,-291.374	0/0:81:81,0:81:2865:0:0:0,-24.3834,-258.089	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:184:86,98:86:3048:98:3482:-258.2,0,-219.164	0/1:50:12,35:12:416:35:1260:-99.1972,0,-23.2666	0/1:6:3,3:3:106:3:93:-6.87055,0,-8.08298	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:98:33,64:33:1168:64:2281:-176.099,0,-75.9745	0/1:129:62,67:62:2205:67:2392:-176.705,0,-159.883	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:204:76,127:76:2671:127:4526:-346.037,0,-179.168	0/1:153:53,96:53:1862:96:3422:-263.067,0,-122.733	0/1:54:27,25:27:952:25:870:-62.6735,0,-70.0571	0/0:97:95,0:95:3346:0:0:0,-28.5978,-301.001	0/1:158:80,77:80:2820:77:2734:-198.679,0,-206.42	0/1:189:53,134:53:1886:134:4714:-367.801,0,-113.401	0/0:79:77,0:77:2721:0:0:0,-23.1793,-244.796	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.548	0/1:40:22,18:22:792:18:648:-46.6107,0,-59.5645	0/1:20:7,13:7:241:13:453:-35.079,0,-16.0055	0/0:106:105,1:105:3696:1:36:0,-28.3109,-329.251	0/1:86:48,37:48:1700:37:1332:-94.342,0,-127.446	0/0:149:148,0:148:5262:0:0:0,-44.5524,-473.363	0/0:114:114,0:114:4049:0:0:0,-34.3174,-364.601	0/1:96:37,51:37:1325:51:1828:-137.96,0,-92.7115	0/0:81:78,0:78:2743:0:0:0,-23.4803,-246.754	0/1:21:12,9:12:420:9:324:-23.1842,0,-31.8122	0/0:109:108,1:108:3808:1:36:0,-29.214,-339.326	0/1:100:46,54:46:1634:54:1925:-143.419,0,-117.246	0/0:186:186,0:186:6605:0:0:0,-55.9916,-594.537	0/0:67:67,0:67:2385:0:0:0,-20.169,-214.908	0/0:79:79,0:79:2795:0:0:0,-23.7814,-251.792	0/1:32:13,19:13:468:19:684:-52.2574,0,-32.8267	0/0:134:132,0:132:4680:0:0:0,-39.736,-421.005	0/1:25:12,13:12:417:13:468:-34.9339,0,-30.336	0/1:82:34,48:34:1196:48:1705:-129.049,0,-83.2605	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.495	0/1:62:37,24:37:1314:24:864:-59.4174,0,-99.8978	0/1:121:60,58:60:2128:58:2061:-149.878,0,-155.908	0/1:77:19,57:19:666:57:1957:-153.159,0,-37.0259	0/0:147:147,0:147:5223:0:0:0,-44.2514,-470.213	0/0:98:97,0:97:3451:0:0:0,-29.1999,-310.446
chr09	18311946	.	AAATC	GAATC,GAATA	121319	PASS	AB=0.498311,0.498925;ABP=3.09097,3.04297;AC=126,56;AF=0.692308,0.307692;AN=182;AO=4092,1635;CIGAR=1X4M,1X3M1X;DP=5746;DPB=5746;DPRA=12.7578,0.934629;EPP=8888.68,3553.37;EPPR=0;GTI=4;LEN=1,5;MEANALT=1.83333,2.11864;MQM=59.7727,59.8263;MQMR=0;NS=91;NUMALT=2;ODDS=1.26062;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=146320,57652;QR=0;RO=0;RPL=0,0;RPP=8888.68,3553.37;RPPR=0;RPR=4092,1635;RUN=1,1;SAF=4092,1635;SAP=8888.68,3553.37;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:18:0,8,10:0:0:8,10:288,352:-52.5107,-29.0078,-26.5996,-23.8592,0,-20.8489	1/1:85:0,83,1:0:0:83,1:2984,36:-268.428,-24.9855,0,-265.491,-22.0479,-265.19	1/1:86:0,86,0:0:0:86,0:3080,0:-277.418,-25.8886,0,-277.418,-25.8886,-277.418	1/1:107:0,106,0:0:0:106,0:3800,0:-341.829,-31.9092,0,-341.829,-31.9092,-341.829	1/2:17:0,9,8:0:0:9,8:324,281:-49.6622,-23.2208,-20.5115,-26.7966,0,-24.3883	1/2:27:0,15,12:0:0:15,12:525,414:-76.6923,-33.9767,-29.4613,-43.0626,0,-39.4502	1/1:89:0,88,0:0:0:88,0:3149,0:-283.244,-26.4906,0,-283.244,-26.4906,-283.244	1/2:113:0,40,72:0:0:40,72:1425,2529:-320.943,-204.797,-192.756,-116.14,0,-94.4657	1/2:51:0,21,30:0:0:21,30:752,1063:-148.273,-86.9481,-80.6265,-61.6813,0,-52.6504	1/1:99:0,99,0:0:0:99,0:3537,0:-318.538,-29.802,0,-318.538,-29.802,-318.538	1/2:16:0,12,4:0:0:12,4:432,141:-47.0876,-11.833,-8.22062,-35.6088,0,-34.4047	1/1:37:0,37,0:0:0:37,0:1309,0:-118.097,-11.1381,0,-118.097,-11.1381,-118.097	1/2:30:0,20,10:0:0:20,10:712,360:-87.7559,-29.7316,-23.711,-58.3827,0,-55.3724	1/2:21:0,12,9:0:0:12,9:432,323:-61.9554,-26.7058,-23.0934,-35.6088,0,-32.8996	1/2:28:0,21,7:0:0:21,7:752,250:-82.067,-20.7395,-14.4179,-61.6846,0,-59.5774	1/2:16:0,11,5:0:0:11,5:396,180:-47.3585,-15.0469,-11.7356,-32.6714,0,-31.1663	1/2:17:0,12,5:0:0:12,5:428,171:-49.1212,-14.2209,-10.6085,-35.2464,0,-33.7413	1/2:34:0,25,9:0:0:25,9:900,320:-99.8719,-26.4332,-18.9075,-73.7953,0,-71.086	1/1:16:0,16,0:0:0:16,0:576,0:-52.1491,-4.81648,0,-52.1491,-4.81648,-52.1491	1/2:114:0,52,61:0:0:52,61:1872,2115:-324.65,-171.898,-156.244,-152.746,0,-134.383	1/2:83:0,49,34:0:0:49,34:1741,1213:-241.107,-99.2412,-84.4907,-142.222,0,-131.987	1/2:98:0,33,61:0:0:33,61:1180,2148:-271.087,-174.873,-164.939,-96.2165,0,-77.8537	1/1:34:0,34,0:0:0:34,0:1224,0:-110.462,-10.235,0,-110.462,-10.235,-110.462	1/2:67:0,32,35:0:0:32,35:1148,1232:-194.29,-100.648,-91.0153,-93.9969,0,-83.4608	1/1:33:0,33,0:0:0:33,0:1172,0:-105.781,-9.93399,0,-105.781,-9.93399,-105.781	1/2:230:0,103,127:0:0:103,127:3700,4488:-667.694,-365.855,-334.849,-302.195,0,-263.964	1/2:146:0,65,81:0:0:65,81:2321,2823:-419.157,-229.929,-210.362,-189.581,0,-165.198	1/2:9:0,8,1:0:0:8,1:288,36:-26.7966,-3.29724,-0.889005,-23.8592,0,-23.5581	1/2:219:0,125,94:0:0:125,94:4465,3279:-631.068,-267.036,-229.408,-364.384,0,-336.087	1/2:123:0,43,80:0:0:43,80:1540,2856:-358.768,-233.195,-220.251,-125.93,0,-101.848	1/2:84:0,42,42:0:0:42,42:1500,1481:-243.225,-120.943,-108.299,-122.637,0,-109.994	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:144,0:-13.3102,-1.20412,0,-13.3102,-1.20412,-13.3102	2/2:5:0,0,5:0:0:0,5:0,171:-15.7265,-15.7265,-15.7265,-1.50515,-1.50515,0	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:74:0,48,26:0:0:48,26:1720,930:-216.47,-76.1918,-61.7423,-140.636,0,-132.809	1/1:169:0,168,0:0:0:168,0:5994,0:-539.176,-50.573,0,-539.176,-50.573,-539.176	1/2:14:0,5,9:0:0:5,9:180,323:-41.3933,-26.7058,-25.2006,-15.0469,0,-12.3376	.:.:.:.:.:.:.:.	1/1:135:0,134,0:0:0:134,0:4777,0:-429.667,-40.338,0,-429.667,-40.338,-429.667	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:101:0,48,53:0:0:48,53:1720,1869:-292.807,-152.531,-138.082,-140.631,0,-124.677	1/2:17:0,12,5:0:0:12,5:432,170:-49.3868,-14.1283,-10.516,-35.6042,0,-34.0991	1/2:17:0,14,3:0:0:14,3:504,102:-49.6662,-8.52325,-4.30883,-41.4837,0,-40.5806	1/1:99:0,98,0:0:0:98,0:3477,0:-312.633,-29.5009,0,-312.633,-29.5009,-312.633	1/2:71:0,30,41:0:0:30,41:1072,1447:-205.591,-118.184,-109.154,-87.7616,0,-75.4193	1/1:138:0,136,2:0:0:136,2:4872,71:-438.269,-40.9401,0,-432.484,-34.8001,-431.882	1/1:134:0,133,0:0:0:133,0:4723,0:-423.801,-40.037,0,-423.801,-40.037,-423.801	1/2:112:0,61,51:0:0:61,51:2177,1795:-323.947,-146.48,-128.117,-177.821,0,-162.468	1/1:83:0,82,1:0:0:82,1:2948,34:-265.212,-24.6845,0,-262.455,-21.5866,-262.154	1/2:8:0,7,1:0:0:7,1:252,30:-23.3128,-2.69854,-0.591326,-20.9217,0,-20.6207	1/1:86:0,86,0:0:0:86,0:3088,0:-278.147,-25.8886,0,-278.147,-25.8886,-278.147	1/1:29:0,29,0:0:0:29,0:1036,0:-93.5539,-8.72987,0,-93.5539,-8.72987,-93.5539	1/2:15:0,10,5:0:0:10,5:360,171:-43.6074,-14.2212,-11.2109,-29.734,0,-28.2289	1/2:60:0,33,27:0:0:33,27:1188,950:-174.626,-77.6865,-67.7525,-97.2946,0,-89.1668	1/2:33:0,19,14:0:0:19,14:665,497:-94.9468,-40.8509,-35.1314,-54.4486,0,-50.2342	1/2:3:0,1,2:0:0:1,2:36,71:-9.07908,-6.14,-5.83897,-3.29724,0,-2.69518	1/2:23:0,7,16:0:0:7,16:252,551:-65.6644,-45.0977,-42.9905,-20.9217,0,-16.1053	1/2:47:0,13,34:0:0:13,34:468,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chr09	18311998	.	C	A	71942	PASS	AB=0.467061;ABP=28.4733;AC=124;AF=0.681319;AN=182;AO=3577;CIGAR=1X;DP=5082;DPB=5082;DPRA=16.2921;EPP=7770.37;EPPR=3268.9;GTI=5;LEN=1;MEANALT=1.01124;MQM=59.7464;MQMR=59.9149;NS=91;NUMALT=1;ODDS=2.33499;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125785;QR=49590;RO=1504;RPL=3577;RPP=7770.37;RPPR=3268.9;RPR=0;RUN=1;SAF=3577;SAP=7770.37;SAR=0;SRF=1504;SRP=3268.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:6,7:6:208:7:240:-18.0213,0,-15.1457	1/1:87:1,86:1:36:86:3016:-268.068,-22.5913,0	1/1:86:0,86:0:0:86:3026:-272.563,-25.8886,0	1/1:107:0,107:0:0:107:3787:-341.017,-32.2102,0	0/1:16:8,8:8:260:8:276:-20.3588,0,-18.8979	0/1:27:11,16:11:362:16:564:-42.9601,0,-24.7705	1/1:87:0,87:0:0:87:3071:-276.589,-26.1896,0	0/1:103:64,39:64:2142:39:1363:-91.9615,0,-162.037	0/1:49:27,22:27:887:22:755:-53.515,0,-65.3773	1/1:99:0,99:0:0:99:3496:-314.855,-29.802,0	0/1:16:4,12:4:129:12:424:-33.6799,0,-7.11118	1/1:36:0,36:0:0:36:1271:-114.679,-10.8371,0	0/1:31:10,21:10:336:21:744:-57.9466,0,-21.2317	0/1:21:9,12:9:300:12:420:-31.8124,0,-21.0005	0/1:26:7,19:7:227:19:662:-52.0756,0,-12.9216	0/1:17:5,12:5:163:12:399:-31.1132,0,-9.87385	0/1:15:5,10:5:167:10:348:-27.1397,0,-10.843	0/1:34:9,25:9:303:25:888:-70.004,0,-17.3617	1/1:14:0,14:0:0:14:492:-44.5998,-4.21442,0	0/1:108:55,53:55:1800:53:1856:-134.809,0,-129.761	0/1:77:31,46:31:992:46:1598:-120.929,0,-66.3904	0/0:58:53,5:53:1734:5:172:0,-1.64177,-140.514	1/1:33:1,32:1:21:32:1122:-99.1818,-7.83404,0	0/1:63:31,32:31:998:32:1122:-82.3214,0,-71.1469	1/1:32:0,32:0:0:32:1128:-101.825,-9.63296,0	0/1:143:123,20:123:4113:20:704:-20.6372,0,-327.315	0/1:142:77,65:77:2501:65:2280:-162.717,0,-182.589	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/1:110:85,25:85:2784:25:864:-44.9599,0,-217.684	0/1:117:73,44:73:2427:44:1549:-104.464,0,-183.462	0/1:86:43,43:43:1439:43:1520:-111.193,0,-103.908	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:136:-12.5721,-1.20412,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:37:25,12:25:841:12:419:-26.9046,0,-64.8611	1/1:172:0,172:0:0:172:6105:-549.53,-51.7772,0	0/1:14:9,5:9:303:5:180:-12.3376,0,-23.3823	.:.:.:.:.:.:.:.	1/1:135:0,135:0:0:135:4740:-426.74,-40.6391,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:94:47,47:47:1560:47:1654:-120.845,0,-112.38	0/1:17:5,12:5:167:12:419:-32.9205,0,-10.2409	0/1:17:2,15:2:68:15:527:-42.6427,0,-1.3402	1/1:19:0,19:0:0:19:667:-60.354,-5.71957,0	0/1:66:36,30:36:1167:30:1072:-76.9245,0,-85.4511	1/1:139:2,137:2:64:137:4884:-433.625,-35.7645,0	1/1:136:0,136:0:0:136:4773:-428.659,-40.9401,0	0/1:108:49,59:49:1568:59:2087:-155.578,0,-108.879	1/1:18:0,18:0:0:18:632:-57.2068,-5.41854,0	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	1/1:84:0,84:0:0:84:2937:-264.567,-25.2865,0	1/1:8:0,8:0:0:8:276:-25.1752,-2.40824,0	0/1:15:5,10:5:167:10:356:-27.8658,0,-10.843	0/1:56:24,32:24:804:32:1113:-83.6174,0,-55.8108	0/1:33:13,20:13:394:20:692:-52.6655,0,-25.8191	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:17:15,2:15:506:2:72:-1.71921,0,-40.7429	0/1:47:34,13:34:1120:13:456:-27.2248,0,-86.9188	0/1:51:17,34:17:561:34:1200:-92.8668,0,-35.4506	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:77:62,15:62:2023:15:519:-23.8509,0,-158.881	0/1:155:89,66:89:2945:66:2307:-161.092,0,-218.627	0/1:63:32,31:32:1025:31:1088:-79.261,0,-73.5776	1/1:38:0,38:0:0:38:1319:-119.006,-11.4391,0	0/1:120:57,63:57:1842:63:2214:-163.395,0,-129.916	0/1:65:52,13:52:1738:13:468:-22.8927,0,-137.128	1/1:10:0,10:0:0:10:352:-32.0135,-3.0103,0	1/1:44:0,44:0:0:44:1538:-138.707,-13.2453,0	0/1:32:24,8:24:778:8:271:-15.0865,0,-60.6893	0/1:13:9,4:9:293:4:144:-9.39865,0,-22.7731	1/1:49:0,49:0:0:49:1682:-151.659,-14.7505,0	0/1:50:13,37:13:434:37:1308:-102.964,0,-24.3276	1/1:105:0,105:0:0:105:3657:-328.56,-31.6082,0	1/1:124:0,124:0:0:124:4350:-391.649,-37.3277,0	0/1:84:46,38:46:1541:38:1342:-95.7854,0,-113.681	1/1:72:0,71:0:0:71:2508:-225.65,-21.3731,0	0/1:13:6,7:6:203:7:248:-18.7508,0,-14.6878	1/1:82:0,82:0:0:82:2912:-262.225,-24.6845,0	0/1:93:45,48:45:1506:48:1707:-125.91,0,-107.826	1/1:105:0,105:0:0:105:3683:-331.666,-31.6082,0	1/1:72:0,72:0:0:72:2529:-227.861,-21.6742,0	1/1:38:0,38:0:0:38:1336:-120.54,-11.4391,0	0/1:28:6,22:6:200:22:784:-62.4551,0,-9.89881	1/1:68:0,68:0:0:68:2406:-216.792,-20.47,0	0/1:20:10,10:10:343:10:352:-25.9976,0,-25.18	0/1:33:9,24:9:298:24:838:-65.801,0,-17.2076	1/1:40:0,40:0:0:40:1415:-126.623,-12.0412,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:38:9,29:9:307:29:1019:-80.5775,0,-16.5211	0/1:8:4,4:4:135:4:144:-10.7724,0,-10.0743	1/1:107:0,107:0:0:107:3757:-338.307,-32.2102,0	1/1:46:0,46:0:0:46:1606:-144.828,-13.8474,0
chr09	18312003	.	A	G	72798.6	PASS	AB=0.446824;ABP=71.8309;AC=124;AF=0.681319;AN=182;AO=3548;CIGAR=1X;DP=5173;DPB=5173;DPRA=16.5843;EPP=7707.39;EPPR=3531.65;GTI=6;LEN=1;MEANALT=1;MQM=59.7624;MQMR=59.8548;NS=91;NUMALT=1;ODDS=0.419125;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126851;QR=58121;RO=1625;RPL=3548;RPP=7707.39;RPPR=3531.65;RPR=0;RUN=1;SAF=3548;SAP=7707.39;SAR=0;SRF=1625;SRP=3531.65;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	1/1:85:1,84:1:36:84:3000:-266.627,-21.9893,0	1/1:85:0,85:0:0:85:3036:-273.461,-25.5876,0	1/1:107:0,107:0:0:107:3824:-344.349,-32.2102,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4491	0/1:25:11,14:11:388:14:504:-38.1723,0,-27.7316	1/1:89:0,89:0:0:89:3172:-285.668,-26.7917,0	0/1:112:71,41:71:2532:41:1472:-99.0528,0,-192.846	0/1:53:30,23:30:1068:23:820:-58.1646,0,-80.4728	1/1:96:0,96:0:0:96:3436:-309.453,-28.8989,0	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	1/1:36:0,36:0:0:36:1292:-116.571,-10.8371,0	0/1:31:10,21:10:360:21:756:-59.0257,0,-23.41	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:28:7,21:7:252:21:752:-59.5774,0,-14.6001	0/1:16:5,11:5:176:11:388:-30.4409,0,-11.3685	0/1:15:5,10:5:176:10:356:-27.8658,0,-11.6696	0/1:34:9,25:9:324:25:900:-71.086,0,-19.2708	1/1:16:0,16:0:0:16:572:-51.8009,-4.81648,0	0/1:111:60,51:60:2144:51:1821:-130.755,0,-159.813	0/1:81:34,47:34:1220:47:1680:-127.104,0,-85.7225	0/0:67:62,5:62:2220:5:180:0,-3.61694,-183.511	1/1:34:1,33:1:36:33:1180:-102.905,-6.63675,0	0/1:65:34,31:34:1212:31:1116:-81.1847,0,-89.8185	1/1:33:0,33:0:0:33:1180:-106.499,-9.93399,0	0/1:150:130,20:130:4655:20:712:-19.2522,0,-373.946	0/1:141:77,64:77:2731:64:2304:-165.175,0,-203.587	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/1:119:94,25:94:3376:25:900:-45.4892,0,-268.231	0/1:123:80,43:80:2876:43:1540:-101.848,0,-222.047	0/1:83:41,42:41:1476:42:1504:-110.663,0,-108.151	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3102,-1.20412,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:38:26,12:26:936:12:432:-27.7821,0,-73.1203	1/1:171:0,171:0:0:171:6124:-551.231,-51.4761,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	.:.:.:.:.:.:.:.	1/1:137:0,137:0:0:137:4899:-441.005,-41.2411,0	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	0/1:100:52,48:52:1856:48:1724:-125.338,0,-137.211	0/1:17:5,12:5:180:12:432:-34.0991,0,-11.4346	0/1:17:2,15:2:72:15:536:-43.4573,0,-1.71921	1/1:18:0,18:0:0:18:640:-57.7982,-5.41854,0	0/1:69:39,30:39:1396:30:1080:-76.7422,0,-105.168	1/1:135:2,133:2:72:133:4737:-419.642,-33.8023,0	1/1:136:0,136:0:0:136:4836:-434.221,-40.9401,0	0/1:110:51,59:51:1828:59:2116:-157.585,0,-131.687	1/1:21:1,20:1:36:20:701:-59.8135,-2.72336,0	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	1/1:85:0,85:0:0:85:3036:-273.471,-25.5876,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:15:5,10:5:176:10:360:-28.2289,0,-11.6696	0/1:60:27,33:27:964:33:1180:-88.4462,0,-69.0141	0/1:34:14,20:14:500:20:712:-54.167,0,-35.1012	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:18:16,2:16:576:2:72:-1.41818,0,-46.7564	0/1:48:35,13:35:1229:13:468:-28.0102,0,-96.4014	0/1:51:19,32:19:684:32:1139:-87.3795,0,-46.5378	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:80:67,13:67:2391:13:456:-17.2871,0,-190.874	0/1:164:99,65:99:3534:65:2317:-159.279,0,-268.899	0/1:67:35,32:35:1248:32:1139:-82.646,0,-92.4559	1/1:38:0,38:0:0:38:1343:-121.169,-11.4391,0	0/1:121:63,58:63:2237:58:2069:-150.045,0,-165.162	0/1:70:57,13:57:2044:13:468:-21.3875,0,-163.16	1/1:10:0,10:0:0:10:360:-32.7397,-3.0103,0	1/1:44:0,44:0:0:44:1580:-142.485,-13.2453,0	0/1:33:27,6:27:968:6:212:-9.49081,0,-77.503	0/1:15:11,4:11:392:4:140:-8.42755,0,-31.1046	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:51:14,37:14:500:37:1328:-104.464,0,-29.9813	1/1:100:0,100:0:0:100:3584:-322.762,-30.103,0	1/1:123:0,123:0:0:123:4378:-394.157,-37.0267,0	0/1:89:51,38:51:1832:38:1364:-96.2624,0,-138.276	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	1/1:83:0,83:0:0:83:2959:-266.526,-24.9855,0	0/1:94:46,48:46:1652:48:1716:-126.422,0,-120.667	1/1:101:0,101:0:0:101:3603:-324.457,-30.404,0	1/1:68:0,68:0:0:68:2423:-218.326,-20.47,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:27:5,22:5:180:22:792:-63.4779,0,-8.42425	1/1:68:1,67:1:36:67:2404:-213.013,-16.8718,0	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:34:10,24:10:360:24:860:-67.4835,0,-22.5093	1/1:39:0,39:0:0:39:1396:-125.936,-11.7402,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:39:10,29:10:360:29:1044:-82.53,0,-21.0041	0/1:8:4,4:4:144:4:144:-10.7724,0,-10.9054	1/1:106:0,106:0:0:106:3804:-342.534,-31.9092,0	1/1:47:0,47:0:0:47:1680:-151.476,-14.1484,0
chr09	18356902	.	A	G,C	92708.5	PASS	AB=0.513947,0.484906;ABP=7.43207,8.18881;AC=128,58;AF=0.688172,0.311828;AN=186;AO=3127,1274;CIGAR=1X,1X;DP=4405;DPB=4405;DPRA=11.9592,0.918997;EPP=6793.2,2769.47;EPPR=7.35324;GTI=3;LEN=1,1;MEANALT=1.63043,2;MQM=53.8251,56.3148;MQMR=60;NS=93;NUMALT=2;ODDS=0.927986;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=111508,45543;QR=72;RO=2;RPL=0,0;RPP=6793.2,2769.47;RPPR=7.35324;RPR=3127,1274;RUN=1,1;SAF=3127,1274;SAP=6793.2,2769.47;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:48:1,30,17:1:36:30,17:1072,612:-133.586,-46.9832,-40.8897,-83.9648,0,-81.7849	1/1:47:0,47,0:0:0:47,0:1688,0:-151.749,-14.1484,0,-151.749,-14.1484,-151.749	1/1:130:0,130,0:0:0:130,0:4617,0:-413.907,-39.1339,0,-413.907,-39.1339,-413.907	1/1:76:0,76,0:0:0:76,0:2697,0:-242.632,-22.8783,0,-242.632,-22.8783,-242.632	1/2:42:0,23,19:0:0:23,19:824,684:-122.904,-56.0742,-49.1505,-67.1876,0,-61.468	1/2:18:0,13,5:0:0:13,5:468,180:-52.9287,-14.902,-10.9886,-38.3839,0,-36.8788	1/1:14:0,14,0:0:0:14,0:504,0:-45.4388,-4.21442,0,-45.4388,-4.21442,-45.4388	1/2:57:0,33,24:0:0:33,24:1180,849:-165.357,-69.3994,-59.4654,-96.3118,0,-89.087	1/2:43:0,16,27:0:0:16,27:568,972:-125.692,-79.6417,-74.8252,-46.4062,0,-38.2784	1/1:47:0,47,0:0:0:47,0:1677,0:-150.207,-14.1484,0,-150.207,-14.1484,-150.207	1/2:21:0,9,12:0:0:9,12:324,424:-61.1504,-34.8586,-32.1493,-26.6476,0,-23.0353	1/1:63:0,63,0:0:0:63,0:2245,0:-201.536,-18.9649,0,-201.536,-18.9649,-201.536	1/2:62:0,32,30:0:0:32,30:1148,1076:-181.319,-88.0123,-78.3794,-93.6644,0,-84.6335	1/2:45:0,20,25:0:0:20,25:696,900:-130.105,-73.6031,-67.5825,-56.8547,0,-49.329	1/2:60:0,33,27:0:0:33,27:1184,964:-175.264,-78.8022,-68.8682,-96.8188,0,-88.691	1/2:98:0,57,41:0:0:57,41:2036,1471:-285.416,-120.056,-102.897,-165.717,0,-153.375	1/2:18:0,7,11:0:0:7,11:252,387:-52.3333,-31.8459,-29.7386,-20.8434,0,-17.532	1/2:21:0,12,9:0:0:12,9:417,320:-60.2255,-26.4254,-22.813,-34.1516,0,-31.4423	1/1:34:0,34,0:0:0:34,0:1216,0:-108.268,-10.235,0,-108.268,-10.235,-108.268	1/2:77:0,47,30:0:0:47,30:1692,1076:-225.937,-88.047,-73.8985,-138.248,0,-129.217	1/2:130:0,76,52:0:0:76,52:2716,1868:-373.059,-152.31,-129.432,-220.748,0,-205.094	1/2:34:0,13,21:0:0:13,21:468,756:-99.7072,-61.5316,-57.6182,-38.5344,0,-32.2128	1/1:41:0,41,0:0:0:41,0:1464,0:-131.922,-12.3422,0,-131.922,-12.3422,-131.922	1/2:28:0,12,16:0:0:12,16:428,572:-81.3713,-46.9252,-43.3128,-34.8005,0,-29.984	1/1:52:0,52,0:0:0:52,0:1841,0:-165.569,-15.6536,0,-165.569,-15.6536,-165.569	1/2:92:0,49,43:0:0:49,43:1745,1548:-268.738,-126.625,-111.875,-142.471,0,-129.526	1/2:112:0,49,63:0:0:49,63:1745,2251:-325.59,-183.642,-168.892,-142.304,0,-123.339	1/2:21:0,10,11:0:0:10,11:356,383:-60.4497,-31.4777,-28.4674,-29.3237,0,-26.0124	1/2:62:0,38,24:0:0:38,24:1368,860:-181.961,-70.4656,-59.0265,-111.854,0,-104.629	1/2:33:0,20,13:0:0:20,13:716,464:-96.4182,-38.1234,-32.1028,-58.6515,0,-54.7381	1/2:28:0,22,6:0:0:22,6:780,212:-81.1055,-17.6058,-10.9831,-63.853,0,-62.0468	1/1:5:0,5,0:0:0:5,0:180,0:-16.4875,-1.50515,0,-16.4875,-1.50515,-16.4875	1/2:15:0,10,5:0:0:10,5:356,176:-43.6112,-14.6437,-11.6334,-29.32,0,-27.8148	1/1:7:0,7,0:0:0:7,0:252,0:-22.9711,-2.10721,0,-22.9711,-2.10721,-22.9711	2/2:4:0,0,4:0:0:0,4:0,144:-13.3099,-13.3099,-13.3099,-1.20412,-1.20412,0	1/2:8:0,6,2:0:0:6,2:216,72:-23.8078,-6.23275,-4.42657,-17.9346,0,-17.3325	1/2:158:0,75,83:0:0:75,83:2692,2984:-462.354,-243.094,-220.517,-219.618,0,-194.632	1/1:34:0,34,0:0:0:34,0:1216,0:-109.46,-10.235,0,-109.46,-10.235,-109.46	1/2:46:0,26,20:0:0:26,20:932,720:-134.222,-59.0884,-51.2617,-75.4906,0,-69.47	1/1:2:0,2,0:0:0:2,0:72,0:-6.82703,-0.60206,0,-6.82703,-0.60206,-6.82703	1/1:64:0,64,0:0:0:64,0:2296,0:-206.567,-19.2659,0,-206.567,-19.2659,-206.567	1/1:19:0,19,0:0:0:19,0:675,0:-60.8654,-5.71957,0,-60.8654,-5.71957,-60.8654	1/2:103:0,56,47:0:0:56,47:1973,1676:-296.451,-136.745,-119.887,-160.059,0,-145.911	1/2:29:0,15,14:0:0:15,14:540,504:-85.1816,-41.2444,-36.7289,-44.2956,0,-40.0812	1/2:40:0,24,16:0:0:24,16:864,565:-116.565,-46.1554,-38.9307,-70.7641,0,-65.9476	1/1:42:0,42,0:0:0:42,0:1504,0:-135.561,-12.6433,0,-135.561,-12.6433,-135.561	1/2:54:0,38,16:0:0:38,16:1349,576:-156.257,-47.1693,-35.7301,-109.444,0,-104.628	1/1:55:0,55,0:0:0:55,0:1953,0:-175.689,-16.5567,0,-175.689,-16.5567,-175.689	1/1:34:0,34,0:0:0:34,0:1182,0:-106.601,-10.235,0,-106.601,-10.235,-106.601	1/2:58:0,29,29:0:0:29,29:1028,1036:-168.211,-84.7635,-76.0336,-83.8023,0,-75.0725	1/1:45:0,45,0:0:0:45,0:1611,0:-145.016,-13.5464,0,-145.016,-13.5464,-145.016	1/2:5:0,3,2:0:0:3,2:108,72:-15.035,-6.22973,-5.32664,-9.16481,0,-8.56275	1/1:55:0,55,0:0:0:55,0:1968,0:-176.909,-16.5567,0,-176.909,-16.5567,-176.909	1/1:9:0,9,0:0:0:9,0:320,0:-29.1017,-2.70927,0,-29.1017,-2.70927,-29.1017	1/2:6:0,5,1:0:0:5,1:180,36:-17.9419,-3.29624,-1.79109,-15.0053,0,-14.7043	1/2:70:0,43,27:0:0:43,27:1548,964:-204.904,-78.8421,-65.8978,-126.42,0,-118.292	1/2:23:0,8,15:0:0:8,15:284,536:-67.0645,-43.9421,-41.5338,-23.4776,0,-18.9621	1/2:9:0,3,6:0:0:3,6:104,216:-26.3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chr09	18356943	.	GT	AA,GA	204461	PASS	AB=0.523113,0.474737;ABP=24.592,28.7939;AC=130,58;AF=0.691489,0.308511;AN=188;AO=5442,2216;CIGAR=2X,1M1X;DP=7676;DPB=7676;DPRA=20.6237,1.05371;EPP=11794.1,4806.31;EPPR=0;GTI=1;LEN=2,1;MEANALT=1.80645,2.13115;MQM=56.1838,57.7708;MQMR=0;NS=94;NUMALT=2;ODDS=3.64757;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=191603,78804;QR=0;RO=0;RPL=3182,1207;RPP=342.212,41.4265;RPPR=0;RPR=2260,1009;RUN=1,1;SAF=3179,1206;SAP=337.811,40.6544;SAR=2263,1010;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:80:0,47,33:0:0:47,33:1632,1172:-228.04,-95.8406,-81.6922,-132.551,0,-122.617	1/1:71:0,71,0:0:0:71,0:2542,0:-228.579,-21.3731,0,-228.579,-21.3731,-228.579	1/1:157:0,156,0:0:0:156,0:5501,0:-493.109,-46.9607,0,-493.109,-46.9607,-493.109	1/1:108:0,108,0:0:0:108,0:3761,0:-338.328,-32.5112,0,-338.328,-32.5112,-338.328	1/2:69:0,32,37:0:0:32,37:1128,1320:-199.337,-107.863,-98.2303,-91.8273,0,-80.6892	1/2:32:0,22,10:0:0:22,10:782,356:-92.6854,-29.2692,-22.6466,-63.7705,0,-60.7602	1/1:37:0,37,0:0:0:37,0:1303,0:-117.513,-11.1381,0,-117.513,-11.1381,-117.513	1/2:101:0,69,31:0:0:69,31:2454,1108:-290.013,-90.3199,-69.5488,-199.834,0,-190.502	1/2:85:0,39,46:0:0:39,46:1400,1644:-248.249,-134.375,-122.634,-114.232,0,-100.385	1/1:69:0,68,0:0:0:68,0:2391,0:-214.373,-20.47,0,-214.373,-20.47,-214.373	1/2:63:0,24,39:0:0:24,39:845,1395:-182.117,-113.445,-106.221,-69.0247,0,-57.2845	1/1:122:0,121,0:0:0:121,0:4234,0:-380.103,-36.4246,0,-380.103,-36.4246,-380.103	1/2:115:0,61,54:0:0:61,54:2179,1919:-333.937,-156.622,-138.259,-177.67,0,-161.415	1/2:110:0,53,56:0:0:53,56:1858,1986:-312.748,-161.693,-145.738,-151.048,0,-134.19	1/2:110:0,63,47:0:0:63,47:2210,1684:-317.302,-137.549,-118.584,-180.108,0,-165.959	1/2:129:0,77,52:0:0:77,52:2698,1828:-367.825,-148.896,-125.716,-219.28,0,-203.626	1/2:88:0,43,44:0:0:43,44:1493,1563:-248.706,-127.437,-114.492,-121.347,0,-108.102	1/2:67:0,35,32:0:0:35,32:1238,1152:-194.888,-94.1587,-83.6227,-101.086,0,-91.4529	1/1:62:0,62,0:0:0:62,0:2184,0:-195.333,-18.6639,0,-195.333,-18.6639,-195.333	1/2:123:0,75,48:0:0:75,48:2683,1707:-357.938,-139.28,-116.703,-219.014,0,-204.564	1/2:153:0,93,60:0:0:93,60:3313,2147:-444.68,-175.36,-147.364,-269.677,0,-251.615	1/2:44:0,15,29:0:0:15,29:538,1040:-128.543,-84.6717,-80.1563,-44.2288,0,-35.4989	1/1:67:0,67,0:0:0:67,0:2329,0:-209.742,-20.169,0,-209.742,-20.169,-209.742	1/2:111:0,41,70:0:0:41,70:1428,2482:-318.373,-202.458,-190.116,-116.265,0,-95.1928	1/1:90:0,88,1:0:0:88,1:3065,36:-275.375,-26.4906,0,-272.437,-23.4983,-272.136	1/2:167:0,101,63:0:0:101,63:3555,2255:-473.059,-183.787,-153.383,-289.268,0,-270.303	1/2:159:0,74,85:0:0:74,85:2559,3024:-454.131,-246.455,-224.178,-208.026,0,-182.438	1/2:59:0,28,31:0:0:28,31:986,1085:-168.831,-88.6013,-80.1724,-80.5804,0,-71.2484	1/2:99:0,65,34:0:0:65,34:2259,1208:-282.291,-98.7617,-79.1947,-183.882,0,-173.647	1/2:55:0,37,17:0:0:37,17:1289,589:-152.574,-47.8481,-36.7099,-104.719,0,-99.6011	1/2:59:0,36,23:0:0:36,23:1240,816:-167.456,-66.7886,-55.9515,-101.018,0,-94.0944	1/1:9:0,9,0:0:0:9,0:322,0:-29.2573,-2.70927,0,-29.2573,-2.70927,-29.2573	1/2:17:0,12,5:0:0:12,5:404,180:-47.6345,-14.9695,-11.3572,-33.0166,0,-31.5114	1/1:9:0,9,0:0:0:9,0:324,0:-29.4399,-2.70927,0,-29.4399,-2.70927,-29.4399	2/2:4:0,0,4:0:0:0,4:0,136:-12.5729,-12.5729,-12.5729,-1.20412,-1.20412,0	1/2:8:0,6,2:0:0:6,2:214,72:-23.6289,-6.23275,-4.42657,-17.7549,0,-17.1528	1/2:291:0,149,142:0:0:149,142:5248,5013:-835.262,-408.232,-363.378,-427.383,0,-384.637	1/1:60:0,60,0:0:0:60,0:2121,0:-190.857,-18.0618,0,-190.857,-18.0618,-190.857	1/2:91:0,47,44:0:0:47,44:1655,1563:-261.54,-127.679,-113.531,-134.213,0,-120.968	1/1:2:0,2,0:0:0:2,0:72,0:-6.82703,-0.60206,0,-6.82703,-0.60206,-6.82703	1/1:106:0,106,0:0:0:106,0:3720,0:-334.685,-31.9092,0,-334.685,-31.9092,-334.685	1/1:39:0,39,0:0:0:39,0:1362,0:-122.768,-11.7402,0,-122.768,-11.7402,-122.768	1/2:122:0,70,52:0:0:70,52:2433,1850:-347.552,-150.887,-129.815,-197.016,0,-181.362	1/2:103:0,50,53:0:0:50,53:1755,1900:-297.83,-155.126,-140.075,-143.058,0,-127.103	1/2:93:0,46,46:0:0:46,46:1642,1631:-266.45,-132.679,-118.832,-133.767,0,-119.92	1/1:78:0,78,0:0:0:78,0:2739,0:-246.643,-23.4803,0,-246.643,-23.4803,-246.643	1/2:70:0,48,22:0:0:48,22:1707,788:-202.707,-64.4318,-49.9823,-138.631,0,-132.009	1/1:110:0,110,0:0:0:110,0:3855,0:-346.642,-33.1133,0,-346.642,-33.1133,-346.642	1/1:66:0,66,0:0:0:66,0:2328,0:-209.638,-19.868,0,-209.638,-19.868,-209.638	1/2:87:0,42,45:0:0:42,45:1494,1604:-252.476,-131.044,-118.4,-121.788,0,-108.242	1/1:82:0,81,1:0:0:81,1:2866,36:-257.388,-24.3834,0,-254.45,-21.0862,-254.149	1/2:7:0,3,4:0:0:3,4:108,144:-20.8644,-12.0587,-11.1556,-9.16481,0,-7.96069	1/1:83:0,83,0:0:0:83,0:2934,0:-263.735,-24.9855,0,-263.735,-24.9855,-263.735	1/1:17:0,17,0:0:0:17,0:589,0:-53.2893,-5.11751,0,-53.2893,-5.11751,-53.2893	1/2:7:0,5,2:0:0:5,2:180,72:-20.8795,-6.23371,-4.72856,-15.0053,0,-14.4032	1/2:101:0,63,38:0:0:63,38:2242,1356:-293.31,-110.802,-91.8368,-182.864,0,-171.425	1/2:38:0,17,21:0:0:17,21:610,747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chr09	18356952	.	GAT	AAT,AAA	204630	PASS	AB=0.510292,0.487564;ABP=7.3011,9.27517;AC=130,58;AF=0.691489,0.308511;AN=188;AO=5345,2287;CIGAR=1X2M,1X1M1X;DP=7651;DPB=7656.33;DPRA=20.5565,1.10686;EPP=337.222,57.2458;EPPR=3.73412;GTI=1;LEN=1,3;MEANALT=1.86022,2.15385;MQM=56.2365,57.6729;MQMR=60;NS=94;NUMALT=2;ODDS=4.69271;PAIRED=0,0;PAIREDR=0;PAO=8,8;PQA=138,138;PQR=0;PRO=0;QA=190455,80132;QR=105;RO=3;RPL=5340,2283;RPP=11566.1,4934.48;RPPR=9.52472;RPR=5,4;RUN=1,1;SAF=3121,1259;SAP=329.893,53.6758;SAR=2224,1028;SRF=2;SRP=3.73412;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:80:0,45,34:0:0:45,34:1582,1206:-226.453,-98.242,-84.6956,-128.208,0,-117.973	1/1:71:0,71,0:0:0:71,0:2544,0:-228.746,-21.3731,0,-228.746,-21.3731,-228.746	1/1:154:0,154,0:0:0:154,0:5437,0:-487.936,-46.3586,0,-487.936,-46.3586,-487.936	1/1:106:0,105,1:0:0:105,1:3741,27:-336.246,-31.6082,0,-334.124,-29.216,-333.823	1/2:67:0,30,37:0:0:30,37:1068,1306:-193.288,-106.605,-97.5743,-87.0369,0,-75.8988	1/2:33:0,22,11:0:0:22,11:782,373:-93.8505,-30.5583,-23.9356,-63.6356,0,-60.3243	1/1:37:0,37,0:0:0:37,0:1326,0:-119.525,-11.1381,0,-119.525,-11.1381,-119.525	1/2:104:0,68,36:0:0:68,36:2427,1258:-300.046,-102.459,-81.9892,-197.88,0,-187.043	1/2:87:0,39,48:0:0:39,48:1387,1705:-252.075,-139.261,-127.521,-113.169,0,-98.7194	1/1:67:2,65,0:2:72:65,0:2287,0:-198.668,-13.3323,0,-199.27,-19.567,-205.145	1/2:60:0,22,37:0:0:22,37:788,1295:-169.464,-105.343,-98.7206,-64.1909,0,-53.0528	1/1:119:0,117,0:0:0:117,0:4118,0:-369.845,-35.2205,0,-369.845,-35.2205,-369.845	1/2:115:0,60,55:0:0:60,55:2152,1939:-333.311,-158.118,-140.056,-175.548,0,-158.992	1/2:116:0,52,64:0:0:52,64:1847,2216:-330.65,-180.237,-164.584,-150.764,0,-131.498	1/2:110:0,62,48:0:0:62,48:2199,1683:-316.205,-137.166,-118.502,-179.391,0,-164.941	1/2:130:0,76,54:0:0:76,54:2705,1902:-374.83,-154.972,-132.094,-220.211,0,-203.955	1/2:89:0,42,47:0:0:42,47:1504,1660:-258.029,-135.527,-122.883,-122.858,0,-108.71	1/2:68:0,35,33:0:0:35,33:1252,1169:-197.107,-95.385,-84.849,-102.077,0,-92.1429	1/1:62:0,61,0:0:0:61,0:2167,0:-193.88,-18.3628,0,-193.88,-18.3628,-193.88	1/2:127:0,75,51:0:0:75,51:2688,1778:-363.694,-144.582,-122.004,-219.183,0,-203.831	1/2:152:0,90,62:0:0:90,62:3212,2216:-442.112,-180.962,-153.87,-261.506,0,-242.842	1/2:43:0,14,29:0:0:14,29:504,1026:-124.884,-83.7699,-79.5555,-41.4718,0,-32.7419	1/1:68:0,68,0:0:0:68,0:2427,0:-218.499,-20.47,0,-218.499,-20.47,-218.499	1/2:112:0,40,71:0:0:40,71:1428,2453:-315.451,-199.203,-187.162,-116.241,0,-94.8676	1/1:89:0,88,1:0:0:88,1:3123,36:-280.538,-26.4906,0,-277.601,-23.1934,-277.3	1/2:168:0,103,64:0:0:103,64:3654,2242:-479.906,-182.322,-151.316,-297.577,0,-278.311	1/2:157:0,73,84:0:0:73,84:2608,2940:-451.549,-239.2,-217.225,-212.702,0,-187.416	1/2:59:0,28,31:0:0:28,31:1008,1085:-170.806,-88.6034,-80.1745,-82.5578,0,-73.2259	1/2:97:0,63,34:0:0:63,34:2238,1204:-280.644,-98.3995,-79.4346,-182.599,0,-172.364	1/2:55:0,34,21:0:0:34,21:1216,715:-157.306,-58.2254,-47.9904,-99.3706,0,-93.049	1/2:58:0,34,23:0:0:34,23:1220,799:-164.417,-64.9458,-54.7108,-99.492,0,-92.5683	1/1:9:0,9,0:0:0:9,0:324,0:-29.4373,-2.70927,0,-29.4373,-2.70927,-29.4373	1/2:18:0,13,5:0:0:13,5:459,178:-52.1269,-14.8108,-10.8975,-37.6701,0,-36.1649	1/1:9:0,9,0:0:0:9,0:324,0:-29.4399,-2.70927,0,-29.4399,-2.70927,-29.4399	2/2:4:0,0,4:0:0:0,4:0,142:-13.1258,-13.1258,-13.1258,-1.20412,-1.20412,0	1/2:8:0,6,2:0:0:6,2:216,72:-23.8078,-6.23275,-4.42657,-17.9346,0,-17.3325	1/2:294:0,148,145:0:0:148,145:5280,5080:-843.386,-413.189,-368.636,-430.349,0,-386.7	1/1:57:0,57,0:0:0:57,0:2032,0:-182.853,-17.1587,0,-182.853,-17.1587,-182.853	1/2:89:0,47,42:0:0:47,42:1676,1466:-255.526,-119.561,-105.412,-136.317,0,-123.674	1/1:2:0,2,0:0:0:2,0:72,0:-6.82703,-0.60206,0,-6.82703,-0.60206,-6.82703	1/1:105:0,105,0:0:0:105,0:3743,0:-336.71,-31.6082,0,-336.71,-31.6082,-336.71	1/1:39:0,39,0:0:0:39,0:1392,0:-125.354,-11.7402,0,-125.354,-11.7402,-125.354	1/2:126:0,71,55:0:0:71,55:2507,1947:-362.109,-158.677,-137.303,-203.785,0,-187.229	1/2:103:0,50,53:0:0:50,53:1792,1845:-296.311,-150.28,-135.228,-146.384,0,-130.429	1/2:90:0,44,46:0:0:44,46:1560,1582:-255.571,-128.537,-115.292,-127.383,0,-113.536	1/1:76:0,76,0:0:0:76,0:2708,0:-243.854,-22.8783,0,-243.854,-22.8783,-243.854	1/2:71:0,47,24:0:0:47,24:1679,860:-206.418,-70.3007,-56.1523,-136.474,0,-129.249	1/1:105:0,105,0:0:0:105,0:3763,0:-338.304,-31.6082,0,-338.304,-31.6082,-338.304	1/1:65:0,65,0:0:0:65,0:2330,0:-209.818,-19.567,0,-209.818,-19.567,-209.818	1/2:88:0,42,46:0:0:42,46:1485,1630:-253.764,-133.081,-120.438,-121.036,0,-107.189	1/1:82:0,81,1:0:0:81,1:2896,36:-260.149,-24.3834,0,-257.268,-21.1483,-256.967	1/2:7:0,3,4:0:0:3,4:108,138:-20.3505,-11.5388,-10.6357,-9.16481,0,-7.96069	1/1:83:0,83,0:0:0:83,0:2968,0:-266.784,-24.9855,0,-266.784,-24.9855,-266.784	1/1:16:0,15,1:0:0:15,1:536,28:-48.2703,-4.51545,0,-46.0611,-2.0219,-45.7601	1/2:7:0,5,2:0:0:5,2:176,64:-19.7896,-5.47509,-3.96994,-14.6432,0,-14.0412	1/2:99:0,62,37:0:0:62,37:2224,1303:-287.487,-106.33,-87.6663,-181.511,0,-170.373	1/2:37:0,17,20:0:0:17,20:608,688:-105.673,-56.1069,-50.9894,-49.9171,0,-43.8965	1/2:9:0,3,5:0:0:3,5:108,180:-23.5497,-14.7493,-13.8462,-8.85698,0,-7.35183	1/2:9:0,5,4:0:0:5,4:180,144:-26.7911,-12.1058,-10.6006,-15.0451,0,-13.8409	1/2:57:0,28,29:0:0:28,29:1004,986:-162,-80.3058,-71.8769,-82.0436,0,-73.3137	1/2:118:0,57,60:0:0:57,60:2035,2096:-335.839,-170.213,-153.054,-165.561,0,-147.499	1/1:1:0,1,0:0:0:1,0:32,0:-3.19931,-0.30103,0,-3.19931,-0.30103,-3.19931	1/2:70:0,38,32:0:0:38,32:1352,1104:-200.035,-89.88,-78.4408,-110.504,0,-100.872	1/2:56:0,30,26:0:0:30,26:1067,912:-160.957,-74.0254,-64.9945,-87.2836,0,-79.4569	1/2:64:0,32,32:0:0:32,32:1152,1127:-185.964,-92.0681,-82.4352,-94.2512,0,-84.6182	1/1:58:0,57,1:0:0:57,1:2002,36:-179.918,-17.1587,0,-176.982,-13.8641,-176.681	1/2:104:0,53,51:0:0:53,51:1883,1787:-298.953,-145.606,-129.651,-153.7,0,-138.347	1/2:129:0,40,89:0:0:40,89:1432,3135:-371.93,-255.295,-243.254,-116.99,0,-90.1985	1/1:47:1,46,0:1:33:46,0:1635,0:-144.022,-10.8493,0,-144.323,-13.8474,-146.991	1/1:46:0,45,0:0:0:45,0:1604,0:-144.169,-13.5464,0,-144.169,-13.5464,-144.169	1/2:120:0,67,53:0:0:67,53:2370,1843:-342.946,-150.004,-129.835,-193.292,0,-177.337	1/2:10:0,7,3:0:0:7,3:252,96:-28.6344,-8.05156,-5.94435,-20.9146,0,-20.0115	1/1:75:0,75,0:0:0:75,0:2684,0:-241.274,-22.5773,0,-241.274,-22.5773,-241.274	1/2:79:0,49,30:0:0:49,30:1751,1043:-227.525,-85.059,-70.3085,-142.817,0,-133.786	1/1:122:0,122,0:0:0:122,0:4355,0:-391.223,-36.7257,0,-391.223,-36.7257,-391.223	1/1:97:0,97,0:0:0:97,0:3464,0:-311.797,-29.1999,0,-311.797,-29.1999,-311.797	1/2:78:0,34,43:0:0:34,43:1220,1492:-220.226,-121.196,-110.961,-98.9685,0,-86.0242	1/1:103:0,103,0:0:0:103,0:3661,0:-328.958,-31.0061,0,-328.958,-31.0061,-328.958	1/2:13:0,6,7:0:0:6,7:212,249:-37.7325,-20.5033,-18.6971,-17.5821,0,-15.4749	1/1:107:0,107,0:0:0:107,0:3836,0:-344.781,-32.2102,0,-344.781,-32.2102,-344.781	1/2:63:0,37,26:0:0:37,26:1320,904:-180.515,-73.1018,-61.9637,-107.762,0,-99.9352	1/1:144:0,143,1:0:0:143,1:5092,25:-456.997,-43.0473,0,-455.053,-40.8526,-454.752	1/1:138:0,138,0:0:0:138,0:4951,0:-445.133,-41.5421,0,-445.133,-41.5421,-445.133	1/1:98:0,97,0:0:0:97,0:3449,0:-310.185,-29.1999,0,-310.185,-29.1999,-310.185	1/2:131:0,64,67:0:0:64,67:2291,2381:-380.559,-193.833,-174.567,-187.082,0,-166.913	1/1:181:0,178,2:0:0:178,2:6311,72:-566.932,-53.5833,0,-561.102,-47.7516,-560.5	1/2:55:0,20,35:0:0:20,35:720,1242:-160.201,-101.508,-95.4873,-59.0509,0,-48.5148	1/2:93:0,40,53:0:0:40,53:1423,1874:-268.476,-152.886,-140.844,-115.886,0,-99.9312	1/1:101:0,101,0:0:0:101,0:3580,0:-321.822,-30.404,0,-321.822,-30.404,-321.822	1/2:63:0,34,29:0:0:34,29:1220,1024:-183.123,-83.6793,-73.4443,-99.7991,0,-91.0692	1/2:100:0,39,61:0:0:39,61:1392,2138:-287.218,-173.937,-162.197,-113.576,0,-95.2135	1/2:119:0,35,84:0:0:35,84:1252,2923:-339.912,-237.852,-227.316,-102.414,0,-77.1278	1/1:109:0,108,1:0:0:108,1:3848,27:-345.185,-32.5112,0,-343.063,-30.1191,-342.762	1/1:135:0,135,0:0:0:135,0:4818,0:-433.112,-40.6391,0,-433.112,-40.6391,-433.112
chr09	18369110	.	CGTTAAG	TGTTGAG,CGTTGAG	183853	PASS	AB=0.50449,0.488872;ABP=3.90738,8.51996;AC=131,57;AF=0.696809,0.303191;AN=188;AO=6319,2514;CIGAR=1X3M1X2M,4M1X2M;DP=8884;DPB=8884;DPRA=0,1.05976;EPP=13724.5,5462.09;EPPR=5.18177;GTI=0;LEN=7,1;MEANALT=2.14894,2.50794;MQM=59.9013,59.9841;MQMR=60;NS=94;NUMALT=2;ODDS=7.71631;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.333333;PQA=10.6667,10.6667;PQR=10.6667;PRO=0.333333;QA=221668,89406;QR=34;RO=1;RPL=0,0;RPP=13724.5,5462.09;RPPR=5.18177;RPR=6319,2514;RUN=1,1;SAF=0,0;SAP=13724.5,5462.09;SAR=6319,2514;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:43:0,16,27:0:0:16,27:562,955:-123.878,-78.137,-73.3206,-46.0932,0,-37.9654	1/1:131:0,130,0:0:0:130,0:4561,0:-410.324,-39.1339,0,-410.324,-39.1339,-410.324	1/1:125:0,122,0:0:0:122,0:4280,0:-385.056,-36.7257,0,-385.056,-36.7257,-385.056	1/1:214:0,213,1:0:0:213,1:7456,36:-670.627,-64.1194,0,-667.69,-60.8221,-667.389	1/2:71:0,40,31:0:0:40,31:1397,1097:-203.34,-89.7061,-77.6649,-113.986,0,-104.654	1/2:40:0,15,25:0:0:15,25:525,884:-115.066,-72.3526,-67.8372,-43.0644,0,-35.5387	1/1:131:0,131,0:0:0:131,0:4570,0:-411.473,-39.4349,0,-411.473,-39.4349,-411.473	1/2:150:0,90,59:0:0:90,59:3153,2090:-426.936,-170.392,-143.3,-256.683,0,-238.922	1/2:87:0,44,42:0:0:44,42:1542,1499:-247.752,-122.279,-109.033,-125.544,0,-112.901	1/1:136:0,135,0:0:0:135,0:4764,0:-428.636,-40.6391,0,-428.636,-40.6391,-428.636	1/2:47:0,18,29:0:0:18,29:631,1036:-136.168,-84.824,-79.4055,-51.6973,0,-42.9675	1/1:61:0,61,0:0:0:61,0:2148,0:-193.587,-18.3628,0,-193.587,-18.3628,-193.587	1/2:69:0,35,34:0:0:35,34:1245,1206:-200.075,-98.6107,-88.0747,-101.819,0,-91.5841	1/2:59:0,34,25:0:0:34,25:1196,883:-169.62,-72.2617,-62.0267,-97.7104,0,-90.1846	1/2:53:0,23,30:0:0:23,30:791,1064:-151.273,-87.0408,-80.1171,-64.5803,0,-55.5494	1/2:66:0,32,34:0:0:32,34:1131,1187:-189.012,-96.8979,-87.2649,-92.4652,0,-82.2302	1/2:63:0,29,33:0:0:29,33:1019,1157:-177.141,-94.199,-85.4692,-82.9901,0,-73.0561	1/2:40:0,21,19:0:0:21,19:725,675:-114.254,-55.3574,-49.0358,-59.2468,0,-53.5272	1/1:37:0,37,0:0:0:37,0:1294,0:-116.747,-11.1381,0,-116.747,-11.1381,-116.747	1/2:219:0,100,117:0:0:100,117:3493,4137:-621.107,-337.025,-306.922,-284.166,0,-248.946	1/2:98:0,39,59:0:0:39,59:1379,2086:-282.561,-170.246,-158.506,-112.669,0,-94.9079	1/2:126:0,31,95:0:0:31,95:1082,3382:-363.996,-275.995,-266.663,-88.3511,0,-59.7533	1/1:56:0,56,0:0:0:56,0:1969,0:-177.476,-16.8577,0,-177.476,-16.8577,-177.476	1/2:148:0,74,73:0:0:74,73:2623,2620:-427.508,-213.821,-191.545,-213.792,0,-191.817	1/1:50:0,50,0:0:0:50,0:1765,0:-159.133,-15.0515,0,-159.133,-15.0515,-159.133	1/2:297:0,161,133:0:0:161,133:5589,4751:-841.658,-387.368,-338.902,-454.299,0,-414.262	1/2:156:0,73,82:0:0:73,82:2566,2926:-447.413,-238.549,-216.574,-208.877,0,-184.192	1/2:29:0,18,11:0:0:18,11:622,396:-83.201,-32.6714,-27.2529,-50.8839,0,-47.5726	1/2:249:0,143,104:0:0:143,104:5040,3727:-714.395,-304.046,-260.999,-410.427,0,-379.12	1/2:197:0,119,77:0:0:119,77:4178,2751:-564.326,-224.293,-188.47,-340.028,0,-316.849	1/2:118:0,59,57:0:0:59,57:2053,2032:-332.561,-165.634,-147.873,-166.92,0,-149.761	1/1:9:0,9,0:0:0:9,0:319,0:-29.0514,-2.70927,0,-29.0514,-2.70927,-29.0514	1/2:20:0,11,9:0:0:11,9:372,320:-56.5798,-26.4331,-23.1218,-30.4943,0,-27.7851	1/1:7:0,7,0:0:0:7,0:251,0:-22.9379,-2.10721,0,-22.9379,-2.10721,-22.9379	1/2:8:0,3,5:0:0:3,5:108,176:-23.4951,-14.6799,-13.7768,-9.17208,0,-7.66693	1/2:7:0,1,6:0:0:1,6:36,212:-20.557,-17.6186,-17.3176,-3.29724,0,-1.49106	1/2:129:0,55,74:0:0:55,74:1917,2630:-370.567,-214.671,-198.114,-156.248,0,-133.972	1/1:247:0,247,0:0:0:247,0:8657,0:-779.123,-74.3544,0,-779.123,-74.3544,-779.123	1/2:66:0,38,28:0:0:38,28:1317,1004:-189.284,-82.247,-70.8079,-107.39,0,-98.9612	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:260:0,256,2:0:0:256,2:8985,72:-808.303,-77.0637,0,-802.428,-71.1764,-801.826	1/1:43:0,42,0:0:0:42,0:1479,0:-133.009,-12.6433,0,-133.009,-12.6433,-133.009	1/2:134:0,56,78:0:0:56,78:1959,2774:-385.795,-226.42,-209.563,-159.727,0,-136.246	1/2:71:1,34,36:1:34:34,36:1198,1279:-198.713,-101.477,-94,-94.7925,0,-86.713	1/2:64:0,36,28:0:0:36,28:1245,988:-181.966,-80.8051,-69.968,-101.511,0,-93.0821	1/1:91:0,91,0:0:0:91,0:3211,0:-289.209,-27.3937,0,-289.209,-27.3937,-289.209	1/2:157:0,80,77:0:0:80,77:2776,2755:-450.659,-225.012,-200.93,-225.999,0,-202.82	1/1:214:0,213,0:0:0:213,0:7504,0:-675.084,-64.1194,0,-675.084,-64.1194,-675.084	1/1:120:0,119,0:0:0:119,0:4179,0:-375.993,-35.8226,0,-375.993,-35.8226,-375.993	1/2:136:0,66,65:0:0:66,65:2320,2320:-377.984,-189.145,-169.277,-188.844,0,-169.277	1/1:142:0,142,0:0:0:142,0:4967,0:-447.185,-42.7463,0,-447.185,-42.7463,-447.185	1/2:9:0,4,5:0:0:4,5:142,180:-26.6146,-15.0469,-13.8428,-11.9247,0,-10.4196	1/1:187:0,186,0:0:0:186,0:6529,0:-587.36,-55.9916,0,-587.36,-55.9916,-587.36	1/1:28:0,28,0:0:0:28,0:973,0:-87.8783,-8.42884,0,-87.8783,-8.42884,-87.8783	1/2:23:0,9,14:0:0:9,14:323,503:-67.7402,-41.3933,-38.684,-26.7058,0,-22.4914	1/2:115:0,63,52:0:0:63,52:2220,1851:-331.947,-151.216,-132.251,-181.085,0,-165.432	1/2:34:0,14,20:0:0:14,20:497,712:-98.8815,-58.3861,-54.1716,-40.8507,0,-34.8301	1/2:12:0,4,8:0:0:4,8:142,273:-34.0668,-22.4919,-21.2878,-11.9252,0,-9.51691	1/2:20:0,15,5:0:0:15,5:505,180:-55.946,-15.0469,-10.5315,-41.2531,0,-39.7479	1/2:68:0,26,42:0:0:26,42:935,1508:-199.655,-123.371,-115.545,-76.6426,0,-63.9994	1/2:105:0,50,53:0:0:50,53:1765,1867:-295.65,-151.921,-136.87,-143.722,0,-127.768	1/1:10:0,10,0:0:0:10,0:341,0:-31.0189,-3.0103,0,-31.0189,-3.0103,-31.0189	1/2:218:0,141,76:0:0:141,76:4975,2696:-624.785,-219.704,-177.259,-405.135,0,-382.256	1/2:206:0,113,93:0:0:113,93:3939,3324:-591.719,-271.379,-237.363,-320.693,0,-292.697	1/2:92:0,52,38:0:0:52,38:1794,1360:-256.624,-110.935,-95.2814,-145.714,0,-134.275	1/1:77:0,77,0:0:0:77,0:2705,0:-243.694,-23.1793,0,-243.694,-23.1793,-243.694	1/2:141:0,89,50:0:0:89,50:3105,1765:-396.28,-143.744,-116.953,-252.551,0,-237.5	1/2:117:0,39,77:0:0:39,77:1371,2721:-333.279,-221.683,-209.943,-111.676,0,-88.4968	1/1:23:0,23,0:0:0:23,0:800,0:-72.3187,-6.92369,0,-72.3187,-6.92369,-72.3187	1/1:68:0,67,1:0:0:67,1:2368,36:-213.02,-20.169,0,-210.083,-16.8718,-209.781	1/2:49:0,22,26:0:0:22,26:773,928:-138.673,-75.7575,-69.1349,-63.0135,0,-55.1867	1/2:29:0,20,9:0:0:20,9:705,320:-83.8267,-26.4331,-20.4125,-57.748,0,-55.0388	1/1:107:0,107,0:0:0:107,0:3737,0:-336.537,-32.2102,0,-336.537,-32.2102,-336.537	1/2:49:0,23,26:0:0:23,26:818,904:-140.512,-73.8451,-66.9214,-67.0187,0,-59.1919	1/1:150:0,150,0:0:0:150,0:5263,0:-473.818,-45.1545,0,-473.818,-45.1545,-473.818	1/1:158:0,157,0:0:0:157,0:5526,0:-497.114,-47.2617,0,-497.114,-47.2617,-497.114	1/2:118:0,73,45:0:0:73,45:2566,1599:-339.463,-130.6,-108.625,-209.165,0,-195.618	1/1:117:0,115,2:0:0:115,2:4066,72:-365.772,-34.6185,0,-359.897,-28.3838,-359.295	1/2:23:0,8,14:0:0:8,14:286,495:-63.6303,-40.3092,-37.901,-23.3177,0,-19.1033	1/1:133:0,132,0:0:0:132,0:4632,0:-416.737,-39.736,0,-416.737,-39.736,-416.737	1/2:125:0,55,70:0:0:55,70:1919,2477:-358.183,-202.108,-185.552,-156.426,0,-135.353	1/1:188:0,184,2:0:0:184,2:6453,72:-580.515,-55.3895,0,-574.64,-49.4897,-574.038	1/1:88:0,88,0:0:0:88,0:3062,0:-275.811,-26.4906,0,-275.811,-26.4906,-275.811	1/1:53:0,51,0:0:0:51,0:1800,0:-161.922,-15.3525,0,-161.922,-15.3525,-161.922	1/2:47:0,24,23:0:0:24,23:834,828:-135.716,-67.9204,-60.6957,-68.1489,0,-61.2252	1/1:98:0,96,2:0:0:96,2:3388,72:-304.777,-28.8989,0,-298.902,-22.6642,-298.3	1/2:44:0,21,20:0:0:21,20:737,712:-118.004,-58.0267,-51.7051,-59.972,0,-53.9514	1/2:65:0,33,32:0:0:33,32:1176,1135:-188.683,-92.8251,-82.8911,-96.2136,0,-86.5807	1/1:64:0,64,0:0:0:64,0:2249,0:-202.673,-19.2659,0,-202.673,-19.2659,-202.673	1/2:41:0,27,14:0:0:27,14:946,504:-118.452,-41.4837,-33.3559,-77.3252,0,-73.1107	1/2:90:0,42,48:0:0:42,48:1495,1701:-260.771,-138.925,-126.281,-122.202,0,-107.752	1/2:65:0,23,42:0:0:23,42:794,1504:-187.509,-123.005,-116.081,-64.8531,0,-52.2098	1/1:62:0,62,0:0:0:62,0:2169,0:-195.474,-18.6639,0,-195.474,-18.6639,-195.474	1/1:76:0,76,0:0:0:76,0:2660,0:-239.648,-22.8783,0,-239.648,-22.8783,-239.648
chr09	18381432	.	C	T	154468	PASS	AB=0.512231;ABP=10.978;AC=131;AF=0.696809;AN=188;AO=7494;CIGAR=1X;DP=10502;DPB=10502;DPRA=56.4516;EPP=16258.7;EPPR=6517.43;GTI=2;LEN=1;MEANALT=1.07527;MQM=59.682;MQMR=59.8827;NS=94;NUMALT=1;ODDS=6.26051;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=268245;QR=107533;RO=3000;RPL=1;RPP=16267.3;RPPR=6517.43;RPR=7493;RUN=1;SAF=7493;SAP=16267.3;SAR=1;SRF=3000;SRP=6517.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:9,13:9:324:13:464:-35.4673,0,-22.8654	1/1:155:0,155:0:0:155:5519:-496.617,-46.6597,0	1/1:129:0,129:0:0:129:4620:-415.924,-38.8329,0	1/1:256:0,256:0:0:256:9151:-823.465,-77.0637,0	0/1:145:71,74:71:2539:74:2649:-194.996,0,-185.111	0/1:76:43,33:43:1531:33:1173:-82.9891,0,-115.204	1/1:158:0,158:0:0:158:5631:-506.899,-47.5627,0	0/1:257:106,151:106:3782:151:5401:-408.8,0,-263.214	0/1:107:46,61:46:1652:61:2175:-163.77,0,-116.752	1/1:177:0,177:0:0:177:6339:-569.723,-53.2823,0	0/1:42:15,27:15:540:27:964:-74.4308,0,-36.2933	1/1:71:0,71:0:0:71:2548:-229.551,-21.3731,0	0/1:66:24,42:24:860:42:1508:-116.09,0,-57.8539	0/1:98:58,40:58:2076:40:1436:-100.022,0,-157.61	0/1:72:40,32:40:1440:32:1152:-82.309,0,-108.215	0/1:49:24,25:24:864:25:885:-65.2066,0,-63.3239	0/1:93:50,43:50:1796:43:1516:-108.579,0,-133.898	0/1:66:34,32:34:1224:32:1152:-84.1222,0,-90.5991	1/1:48:0,48:0:0:48:1728:-155.801,-14.4494,0	0/1:141:52,89:52:1872:89:3185:-244.152,0,-126.296	0/1:135:60,75:60:2156:75:2696:-201.738,0,-153.668	0/1:158:90,68:90:3232:68:2440:-172.289,0,-243.538	1/1:116:0,116:0:0:116:4153:-373.701,-34.9195,0	0/1:90:40,50:40:1427:50:1792:-134.456,0,-101.629	1/1:100:0,100:0:0:100:3600:-324.195,-30.103,0	0/1:347:143,204:143:5140:204:7302:-552.762,0,-358.282	0/1:194:85,109:85:3052:109:3916:-294.184,0,-216.509	0/1:60:36,24:36:1292:24:864:-60.0208,0,-98.522	0/1:230:81,149:81:2896:149:5345:-411.854,0,-191.628	0/1:178:75,103:75:2688:103:3689:-278.613,0,-188.572	0/1:99:52,47:52:1872:47:1688:-122.403,0,-137.594	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-0.359695	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:283:148,135:148:5303:135:4856:-351.998,0,-392.106	1/1:258:3,255:3:108:255:9149:-812.487,-67.5906,0	0/1:48:32,16:32:1152:16:576:-37.7173,0,-89.5407	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:179:4,175:4:144:175:6263:-550.345,-40.5708,0	1/1:26:0,26:0:0:26:936:-84.5548,-7.82678,0	0/1:126:53,73:53:1904:73:2628:-198.828,0,-133.708	0/1:115:65,50:65:2332:50:1771:-124.933,0,-175.435	0/1:72:47,25:47:1692:25:870:-56.9379,0,-130.893	1/1:124:0,124:0:0:124:4437:-399.488,-37.3277,0	0/1:287:149,137:149:5347:137:4900:-354.761,0,-394.426	1/1:352:0,351:0:0:351:12528:-1127.09,-105.662,0	1/1:115:0,114:0:0:114:4081:-367.255,-34.3174,0	0/1:143:74,69:74:2637:69:2480:-180.394,0,-194.258	1/1:88:0,88:0:0:88:3160:-284.622,-26.4906,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:119:1,118:1:36:118:4225:-376.802,-32.2243,0	1/1:47:0,47:0:0:47:1643:-148.15,-14.1484,0	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:181:98,82:98:3496:82:2940:-210.409,0,-260.073	0/1:35:22,13:22:792:13:464:-31.5615,0,-61.0696	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:16:5,11:5:176:11:396:-31.1663,0,-11.3685	0/1:104:53,51:53:1908:51:1831:-133.76,0,-140.69	0/1:161:86,74:86:3096:74:2641:-189.551,0,-230.49	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:321:142,179:142:5088:179:6398:-479.167,0,-361.428	0/1:173:76,97:76:2719:97:3464:-259.56,0,-192.875	0/1:100:36,64:36:1288:64:2285:-175.798,0,-86.1206	1/1:97:0,97:0:0:97:3461:-310.503,-29.1999,0	0/1:193:82,111:82:2940:111:3961:-298.575,0,-206.735	0/1:111:73,38:73:2612:38:1364:-89.5106,0,-201.914	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:102:0,102:0:0:102:3627:-326.578,-30.7051,0	0/1:109:57,52:57:2048:52:1853:-134.234,0,-151.779	0/1:38:22,16:22:770:16:572:-40.3743,0,-58.1802	1/1:108:0,108:0:0:108:3876:-348.747,-32.5112,0	0/1:54:27,27:27:972:27:968:-71.1625,0,-71.5423	1/1:189:2,186:2:72:186:6666:-593.042,-50.0097,0	1/1:118:1,117:1:36:117:4195:-373.827,-31.9233,0	0/1:114:40,74:40:1440:74:2660:-205.305,0,-95.5803	1/1:116:1,115:1:36:115:4124:-367.719,-31.3212,0	0/1:11:5,6:5:176:6:216:-16.4709,0,-12.8737	1/1:140:0,140:0:0:140:4978:-448.04,-42.1442,0	0/1:85:44,41:44:1572:41:1461:-106.17,0,-116.184	1/1:219:0,219:0:0:219:7867:-707.711,-65.9256,0	1/1:129:0,129:0:0:129:4621:-416.005,-38.8329,0	1/1:64:0,64:0:0:64:2277:-205.187,-19.2659,0	0/1:117:60,55:60:2152:55:1976:-143.197,0,-159.041	1/1:188:0,188:0:0:188:6732:-605.899,-56.5936,0	0/1:49:28,21:28:1008:21:756:-53.6168,0,-76.2859	0/1:92:50,42:50:1796:42:1508:-108.267,0,-134.228	1/1:68:0,68:0:0:68:2444:-220.172,-20.47,0	0/1:33:23,10:23:828:10:360:-22.8057,0,-64.9101	0/1:106:64,42:64:2296:42:1508:-104.101,0,-174.992	0/1:93:75,18:75:2658:18:648:-30.6561,0,-211.468	1/1:135:0,135:0:0:135:4837:-435.236,-40.6391,0	1/1:118:0,118:0:0:118:4246:-382.094,-35.5215,0
chr09	18640363	.	AAAG	TAAA,TAAG	173606	PASS	AB=0.481007,0.516474;ABP=17.9399,14.2432;AC=132,56;AF=0.702128,0.297872;AN=188;AO=5884,2474;CIGAR=1X2M1X,1X3M;DP=8385;DPB=8385;DPRA=0,0.959204;EPP=12780,5375.23;EPPR=0;GTI=0;LEN=4,1;MEANALT=1.94681,2.25397;MQM=53.3166,59.4964;MQMR=0;NS=94;NUMALT=2;ODDS=5.91338;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=206829,87858;QR=0;RO=0;RPL=5884,2474;RPP=12780,5375.23;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12780,5375.23;SAR=5884,2474;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:76:0,33,43:0:0:33,43:1145,1526:-216.794,-124.652,-114.718,-92.49,0,-79.5457	1/1:89:0,89,0:0:0:89,0:3106,0:-276.681,-26.7917,0,-276.681,-26.7917,-276.681	1/1:145:0,145,0:0:0:145,0:5085,0:-452.651,-43.6494,0,-452.651,-43.6494,-452.651	1/1:169:0,166,1:0:0:166,1:5788,36:-519.804,-49.971,0,-516.866,-47.0091,-516.565	1/2:59:0,28,31:0:0:28,31:972,1100:-168.289,-89.9507,-81.5219,-78.6879,0,-69.3559	1/2:65:0,34,31:0:0:34,31:1186,1100:-184.991,-89.9646,-79.7296,-95.376,0,-86.0441	1/1:109:0,108,1:0:0:108,1:3781,36:-339.427,-32.5112,0,-336.49,-29.214,-336.189	1/2:162:0,83,78:0:0:83,78:2895,2750:-457.913,-223.683,-198.697,-234.335,0,-210.855	1/2:107:0,55,52:0:0:55,52:1930,1848:-307.292,-150.694,-134.137,-156.951,0,-141.297	1/1:77:0,73,4:0:0:73,4:2571,140:-230.563,-21.9752,0,-219.173,-10.2347,-217.968	1/2:59:0,27,32:0:0:27,32:951,1152:-171.437,-94.3478,-86.22,-77.4444,0,-67.8115	1/1:111:0,111,0:0:0:111,0:3886,0:-348.3,-33.4143,0,-348.3,-33.4143,-348.3	1/2:115:0,57,57:0:0:57,57:2016,2040:-328.426,-166.415,-149.256,-162.074,0,-144.915	1/2:71:0,29,42:0:0:29,42:1039,1512:-207.386,-123.718,-114.988,-84.0246,0,-71.3813	1/2:85:0,46,38:0:0:46,38:1644,1364:-245.117,-111.273,-97.4257,-133.855,0,-122.416	1/2:73:0,26,46:0:0:26,46:929,1648:-209.743,-134.38,-126.553,-75.3601,0,-61.5127	1/2:36:0,16,20:0:0:16,20:574,708:-104.38,-58.025,-53.2085,-46.7097,0,-40.6891	1/2:34:0,20,14:0:0:20,14:705,500:-97.7377,-41.1135,-35.0929,-56.9774,0,-52.763	1/1:51:0,51,0:0:0:51,0:1796,0:-160.861,-15.3525,0,-160.861,-15.3525,-160.861	1/2:112:0,55,56:0:0:55,56:1928,1961:-315.522,-159.532,-142.976,-155.979,0,-139.122	1/1:151:0,151,0:0:0:151,0:5316,0:-477.212,-45.4555,0,-477.212,-45.4555,-477.212	1/2:60:0,20,40:0:0:20,40:700,1420:-172.988,-116.053,-110.033,-57.2859,0,-45.2447	1/1:140:0,140,0:0:0:140,0:4986,0:-448.098,-42.1442,0,-448.098,-42.1442,-448.098	1/2:61:0,32,29:0:0:32,29:1128,1040:-176.598,-85.1707,-75.5377,-91.7826,0,-83.0527	1/1:81:0,79,0:0:0:79,0:2778,0:-248.876,-23.7814,0,-248.876,-23.7814,-248.876	1/2:192:0,99,93:0:0:99,93:3488,3304:-552.75,-269.308,-239.507,-283.795,0,-255.799	1/2:246:0,123,122:0:0:123,122:4320,4270:-697.861,-347.367,-310.341,-350.484,0,-313.759	1/2:27:0,17,10:0:0:17,10:609,360:-79.2769,-29.7294,-24.6118,-49.9064,0,-46.8961	1/2:201:0,107,94:0:0:107,94:3781,3324:-578.758,-271.08,-238.87,-308.031,0,-279.734	1/2:102:0,58,44:0:0:58,44:2053,1560:-294.026,-127.442,-109.982,-166.938,0,-153.693	1/2:98:0,41,56:0:0:41,56:1429,1988:-278.033,-162.046,-149.704,-116.056,0,-99.1978	1/1:4:0,3,0:0:0:3,0:108,0:-9.79232,-0.90309,0,-9.79232,-0.90309,-9.79232	1/2:32:0,19,13:0:0:19,13:679,460:-93.1002,-37.822,-32.1024,-55.6331,0,-51.7197	1/1:5:0,5,0:0:0:5,0:178,0:-16.145,-1.50515,0,-16.145,-1.50515,-16.145	1/2:16:0,8,8:0:0:8,8:288,288:-47.2929,-23.8592,-21.4509,-23.7931,0,-21.3849	1/2:27:0,11,16:0:0:11,16:383,576:-78.4069,-47.3421,-44.0308,-31.4171,0,-26.6006	1/2:180:0,87,93:0:0:87,93:3040,3294:-515.75,-268.676,-242.487,-247.425,0,-219.429	1/1:90:0,89,1:0:0:89,1:3133,21:-281.134,-26.7917,0,-279.554,-25.0012,-279.253	1/2:54:0,21,33:0:0:21,33:743,1180:-156.91,-96.5741,-90.2524,-60.691,0,-50.757	1/1:4:0,4,0:0:0:4,0:143,0:-13.2035,-1.20412,0,-13.2035,-1.20412,-13.2035	1/1:121:0,121,0:0:0:121,0:4253,0:-381.525,-36.4246,0,-381.525,-36.4246,-381.525	1/1:42:0,42,0:0:0:42,0:1473,0:-132.34,-12.6433,0,-132.34,-12.6433,-132.34	1/2:120:0,51,69:0:0:51,69:1783,2449:-344.403,-199.784,-184.431,-144.971,0,-124.2	1/2:54:0,28,26:0:0:28,26:992,928:-156.382,-76.0031,-67.5743,-80.7339,0,-72.9072	1/2:65:0,32,33:0:0:32,33:1133,1172:-187.746,-95.8489,-86.2159,-92.2505,0,-82.3165	1/1:89:0,89,0:0:0:89,0:3123,0:-280.785,-26.7917,0,-280.785,-26.7917,-280.785	1/2:95:0,51,44:0:0:51,44:1807,1560:-272.513,-127.402,-112.049,-145.463,0,-132.218	1/1:127:0,127,0:0:0:127,0:4481,0:-401.39,-38.2308,0,-401.39,-38.2308,-401.39	1/1:62:0,61,0:0:0:61,0:2134,0:-191.523,-18.3628,0,-191.523,-18.3628,-191.523	1/2:71:0,29,42:0:0:29,42:1025,1481:-204.283,-120.939,-112.209,-83.6965,0,-71.0533	1/1:65:0,65,0:0:0:65,0:2278,0:-205.001,-19.567,0,-205.001,-19.567,-205.001	1/2:7:0,3,4:0:0:3,4:107,144:-20.4467,-12.1071,-11.204,-8.68959,0,-7.48547	1/1:127:0,127,0:0:0:127,0:4448,0:-397.958,-38.2308,0,-397.958,-38.2308,-397.958	1/1:58:0,58,0:0:0:58,0:2055,0:-184.992,-17.4597,0,-184.992,-17.4597,-184.992	1/2:15:0,3,12:0:0:3,12:108,428:-44.007,-35.2464,-34.3434,-9.11818,0,-5.50582	1/2:128:0,74,54:0:0:74,54:2606,1909:-366.731,-155.435,-133.159,-211.647,0,-195.391	1/2:54:0,30,24:0:0:30,24:1033,856:-153.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chr09	18641025	.	GTT	GTG,ATG	382425	PASS	AB=0.465034,0.533599;ABP=96.2491,89.1025;AC=130,56;AF=0.698925,0.301075;AN=186;AO=10177,4693;CIGAR=2M1X,1X1M1X;DP=14895;DPB=14895;DPRA=0,1.1529;EPP=22032.7,10176.4;EPPR=35.5824;GTI=0;LEN=1,3;MEANALT=1.76344,2.11475;MQM=51.8653,46.0038;MQMR=59.0667;NS=93;NUMALT=2;ODDS=2.07513;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=359127,164795;QR=449;RO=15;RPL=4648,2187;RPP=168.62,50.0956;RPPR=6.62942;RPR=5529,2506;RUN=1,1;SAF=4642,2185;SAP=173.162,51.2838;SAR=5535,2508;SRF=5;SRP=6.62942;SRR=10;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:71:0,33,38:0:0:33,38:1152,1294:-193.343,-99.8001,-89.8661,-93.8805,0,-82.4413	1/1:113:0,113,0:0:0:113,0:3993,0:-353.877,-34.0164,0,-353.877,-34.0164,-353.877	1/1:149:0,149,0:0:0:149,0:5275,0:-470.751,-44.8535,0,-470.751,-44.8535,-470.751	1/1:382:1,380,1:1:36:380,1:13449,28:-1193.01,-111.403,0,-1191.29,-112.414,-1193.92	1/2:36:0,18,18:0:0:18,18:634,628:-99.2235,-48.0138,-42.5953,-51.5484,0,-46.1298	1/2:41:0,24,17:0:0:24,17:860,581:-112.73,-43.5717,-36.347,-69.4897,0,-64.3722	1/1:145:0,145,0:0:0:145,0:5138,0:-453.675,-43.6494,0,-453.675,-43.6494,-453.675	1/2:141:0,61,79:0:0:61,79:2125,2786:-387.528,-216.63,-198.267,-170.988,0,-147.207	1/2:199:0,85,114:0:0:85,114:2990,4029:-540.405,-299.769,-274.182,-240.974,0,-206.656	1/1:153:0,153,0:0:0:153,0:5440,0:-480.916,-46.0576,0,-480.916,-46.0576,-480.916	1/2:156:0,68,88:0:0:68,88:2384,3092:-407.11,-218.416,-197.946,-189.021,0,-162.53	1/1:220:0,220,0:0:0:220,0:7656,0:-682.186,-66.2266,0,-682.186,-66.2266,-682.186	1/2:215:0,117,98:0:0:117,98:4134,3446:-581.812,-250.537,-215.317,-331.605,0,-302.105	1/2:185:0,85,100:0:0:85,100:3003,3515:-489.154,-248.254,-222.666,-241.231,0,-211.128	1/2:208:0,103,105:0:0:103,105:3652,3685:-567.567,-275.076,-244.07,-292.828,0,-261.22	1/2:183:0,91,92:0:0:91,92:3182,3218:-494.024,-238.488,-211.094,-255.87,0,-228.175	1/2:165:0,83,82:0:0:83,82:2932,2888:-427.08,-193.864,-168.878,-233.537,0,-208.853	1/2:152:0,75,77:0:0:75,77:2636,2713:-400.206,-189.468,-166.891,-211.064,0,-187.884	1/1:79:0,79,0:0:0:79,0:2808,0:-248.536,-23.7814,0,-248.536,-23.7814,-248.536	1/2:251:1,131,119:1:36:131,119:4578,4183:-681.967,-312.619,-276.121,-366.689,0,-333.804	1/1:206:0,205,0:0:0:205,0:7208,0:-641.295,-61.7112,0,-641.295,-61.7112,-641.295	1/2:88:0,20,68:0:0:20,68:707,2405:-248.466,-191.273,-185.253,-57.5428,0,-37.0728	1/1:117:0,117,0:0:0:117,0:4161,0:-370.201,-35.2205,0,-370.201,-35.2205,-370.201	1/2:92:0,45,47:0:0:45,47:1586,1643:-249.661,-121.359,-107.813,-128.636,0,-114.488	1/1:87:0,87,0:0:0:87,0:3040,0:-272.562,-26.1896,0,-272.562,-26.1896,-272.562	1/2:400:1,158,241:1:21:158,241:5622,8472:-1096.52,-646.457,-600.482,-448.907,0,-377.947	1/2:421:0,192,229:0:0:192,229:6703,8029:-1140.6,-600.967,-543.169,-539.974,0,-471.039	1/2:96:0,50,46:0:0:50,46:1762,1636:-257.915,-116.176,-101.124,-142.07,0,-128.222	1/2:321:0,126,195:0:0:126,195:4446,6906:-891.165,-534.171,-496.242,-357.338,0,-298.637	1/2:137:0,62,75:0:0:62,75:2211,2618:-374.081,-195.786,-177.122,-178.634,0,-156.057	1/2:160:0,66,94:0:0:66,94:2335,3285:-430.614,-243.893,-224.025,-187.057,0,-158.761	1/1:11:0,11,0:0:0:11,0:372,0:-33.8038,-3.31133,0,-33.8038,-3.31133,-33.8038	1/2:34:0,12,22:0:0:12,22:415,770:-94.5888,-61.1104,-57.498,-33.8208,0,-27.1981	1/1:4:0,4,0:0:0:4,0:144,0:-13.1707,-1.20412,0,-13.1707,-1.20412,-13.1707	1/2:16:0,6,10:0:0:6,10:216,346:-44.7606,-27.1957,-25.3895,-17.9135,0,-14.9032	1/2:45:0,21,24:0:0:21,24:748,846:-123.387,-62.6824,-56.3608,-61.044,0,-53.8193	1/2:501:0,266,235:0:0:266,235:9419,8270:-1361.68,-604.049,-523.975,-757.959,0,-687.217	1/1:111:1,110,0:1:34:110,0:3924,0:-344.028,-30.0154,0,-344.329,-33.1133,-347.087	1/2:153:0,80,73:0:0:80,73:2834,2608:-408.845,-180.802,-156.72,-228.37,0,-206.395	.:.:.:.:.:.:.:.	1/1:194:1,193,0:1:30:193,0:6878,0:-609.691,-55.4015,0,-609.992,-58.0988,-612.389	1/1:85:0,85,0:0:0:85,0:3019,0:-267.591,-25.5876,0,-267.591,-25.5876,-267.591	1/2:175:0,87,88:0:0:87,88:3077,3124:-487.767,-238.238,-212.048,-249.873,0,-223.382	1/2:234:0,107,127:0:0:107,127:3814,4456:-617.098,-313.414,-281.204,-304.014,0,-265.783	1/2:156:0,90,66:0:0:90,66:3199,2278:-415.95,-160.984,-133.891,-255.288,0,-235.42	1/1:116:0,116,0:0:0:116,0:4130,0:-369.381,-34.9195,0,-369.381,-34.9195,-369.381	1/2:139:0,70,69:0:0:70,69:2467,2430:-386.008,-187.007,-165.935,-199.343,0,-178.572	1/1:238:1,237,0:1:36:237,0:8275,0:-730.727,-68.0469,0,-731.028,-71.3441,-733.966	1/1:189:1,188,0:1:27:188,0:6652,0:-587.591,-54.1952,0,-587.892,-56.5936,-590.02	1/2:230:1,121,108:1:21:121,108:4285,3806:-618.605,-278.179,-243.342,-339.261,0,-308.338	1/1:154:0,154,0:0:0:154,0:5468,0:-489.985,-46.3586,0,-489.985,-46.3586,-489.985	1/2:22:0,13,9:0:0:13,9:450,322:-58.3752,-21.8651,-17.9517,-36.8284,0,-34.1191	1/1:185:0,185,0:0:0:185,0:6567,0:-584.691,-55.6906,0,-584.691,-55.6906,-584.691	1/1:86:0,86,0:0:0:86,0:3046,0:-272.602,-25.8886,0,-272.602,-25.8886,-272.602	1/2:8:0,7,1:0:0:7,1:252,36:-23.4361,-3.29724,-1.19003,-20.4979,0,-20.1969	1/2:198:0,99,99:0:0:99,99:3495,34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chr09	18715153	.	G	C	46592.8	PASS	AB=0.500631;ABP=3.02947;AC=58;AF=0.311828;AN=186;AO=2794;CIGAR=1X;DP=9658;DPB=9658;DPRA=1.08187;EPP=6070.1;EPPR=14892.8;GTI=2;LEN=1;MEANALT=1.0625;MQM=59.9309;MQMR=59.8561;NS=93;NUMALT=1;ODDS=2.39647;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99461;QR=245537;RO=6857;RPL=2794;RPP=6070.1;RPPR=14892.8;RPR=0;RUN=1;SAF=0;SAP=6070.1;SAR=2794;SRF=0;SRP=14892.8;SRR=6857;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:16,12:16:568:12:432:-30.7924,0,-43.023	0/0:130:130,0:130:4648:0:0:0,-39.1339,-418.424	0/0:131:131,0:131:4704:0:0:0,-39.4349,-423.518	0/0:216:215,1:215:7684:1:36:0,-61.4242,-687.832	0/1:66:28,38:28:1004:38:1363:-103.103,0,-70.8079	0/1:30:19,11:19:684:11:396:-26.9518,0,-52.8594	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.486	0/1:139:70,69:70:2516:69:2461:-179.9,0,-184.848	0/1:99:50,49:50:1792:49:1733:-126.451,0,-131.761	0/0:108:106,1:106:3784:1:36:0,-28.9718,-337.127	0/1:100:48,52:48:1728:52:1838:-135.594,0,-125.702	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.748	0/1:94:36,58:36:1296:58:2084:-159.527,0,-88.6471	0/1:131:68,63:68:2421:63:2251:-163.418,0,-178.71	0/1:71:41,30:41:1472:30:1072:-74.9273,0,-110.975	0/1:89:45,44:45:1616:44:1580:-115.7,0,-118.938	0/1:111:68,42:68:2436:42:1493:-101.188,0,-185.893	0/1:85:34,51:34:1224:51:1832:-139.573,0,-84.8795	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.481	0/1:167:87,80:87:3120:80:2853:-206.735,0,-230.754	0/1:87:46,41:46:1648:41:1416:-101.538,0,-122.397	0/1:130:41,88:41:1468:88:3122:-241.956,0,-93.1951	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.843	0/1:74:38,36:38:1368:36:1254:-90.8819,0,-101.145	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.02	0/1:285:141,144:141:5044:144:5125:-375.541,0,-368.309	0/1:168:86,82:86:3084:82:2933:-213.63,0,-227.215	0/1:45:21,24:21:748:24:856:-63.8148,0,-54.0989	0/1:226:113,113:113:4056:113:4011:-292.978,0,-297.193	0/1:150:73,77:73:2616:77:2752:-202.765,0,-190.509	0/1:123:66,57:66:2349:57:2029:-145.854,0,-174.641	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93268	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:249:133,116:133:4738:116:4131:-297.018,0,-351.62	0/0:122:122,0:122:4369:0:0:0,-36.7257,-393.196	0/1:102:62,40:62:2232:40:1427:-98.0217,0,-170.439	.:.:.:.:.:.:.:.	0/0:144:143,0:143:5124:0:0:0,-43.0473,-460.884	0/0:48:47,0:47:1692:0:0:0,-14.1484,-152.207	0/1:124:58,66:58:2080:66:2354:-174.791,0,-150.12	0/1:90:57,33:57:2044:33:1188:-80.1359,0,-157.117	0/1:78:38,40:38:1364:40:1397:-102.542,0,-99.5804	0/0:118:117,0:117:4200:0:0:0,-35.2205,-377.79	0/1:102:62,40:62:2208:40:1432:-98.4725,0,-168.265	0/0:175:172,3:172:6161:3:108:0,-42.6051,-544.193	0/0:116:116,0:116:4145:0:0:0,-34.9195,-373.204	0/1:132:58,74:58:2072:74:2656:-199.55,0,-147.001	0/0:181:181,0:181:6473:0:0:0,-54.4864,-582.58	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/0:181:181,0:181:6484:0:0:0,-54.4864,-583.58	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:114:53,61:53:1889:61:2152:-159.626,0,-135.739	0/1:65:32,33:32:1148:33:1169:-85.9483,0,-84.0629	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:102:39,63:39:1400:63:2264:-173.317,0,-95.4795	0/1:158:76,81:76:2715:81:2904:-213.974,0,-196.971	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:220:126,94:126:4532:94:3331:-233.505,0,-341.79	0/1:226:115,111:115:4128:111:3927:-285.587,0,-303.67	0/1:80:45,35:45:1608:35:1233:-87.1897,0,-120.928	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:103:52,51:52:1860:51:1801:-131.364,0,-136.666	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:87:40,47:40:1436:47:1656:-123.135,0,-103.348	0/1:25:18,7:18:640:7:233:-13.7685,0,-50.4036	0/0:123:123,0:123:4400:0:0:0,-37.0267,-395.924	0/1:86:33,53:33:1188:53:1904:-145.749,0,-81.34	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.83	0/0:219:218,1:218:7820:1:36:0,-62.3273,-699.973	0/1:132:76,56:76:2732:56:2001:-140.626,0,-206.234	0/0:151:151,0:151:5393:0:0:0,-45.4555,-485.497	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:119:119,0:119:4249:0:0:0,-35.8226,-382.588	0/1:108:48,60:48:1724:60:2144:-160.717,0,-122.934	0/0:223:221,2:221:7920:2:72:0,-60.293,-705.964	0/0:132:132,0:132:4722:0:0:0,-39.736,-425.134	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/1:109:60,49:60:2131:49:1756:-125.512,0,-158.985	0/0:175:172,3:172:6171:3:108:0,-42.6051,-545.355	0/1:52:31,21:31:1099:21:756:-52.7137,0,-83.5659	0/1:99:36,63:36:1288:63:2232:-171.34,0,-86.4216	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:85:42,43:42:1508:43:1540:-113.306,0,-110.427	0/1:176:85,91:85:3017:91:3245:-239.289,0,-218.779	0/1:88:27,61:27:964:61:2173:-169.344,0,-60.5853	0/0:137:136,1:136:4868:1:36:0,-37.6428,-434.639	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.586
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chr09	18810961	.	A	T	20640.9	PASS	AB=0.460196;ABP=40.8678;AC=35;AF=0.188172;AN=186;AO=1280;CIGAR=1X;DP=7726;DPB=7726;DPRA=1.01931;EPP=2773.82;EPPR=13879;GTI=2;LEN=1;MEANALT=1;MQM=59.9461;MQMR=59.9867;NS=93;NUMALT=1;ODDS=1.04137;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45822;QR=230841;RO=6446;RPL=1279;RPP=2773.82;RPPR=13879;RPR=1;RUN=1;SAF=0;SAP=2782.49;SAR=1280;SRF=0;SRP=14000.3;SRR=6446;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:108:108,0:108:3854:0:0:0,-32.5112,-347.055	0/1:163:88,75:88:3148:75:2684:-192.737,0,-234.478	0/0:198:198,0:198:7051:0:0:0,-59.6039,-634.653	0/1:54:25,29:25:896:29:1044:-78.0192,0,-64.7047	0/1:44:32,12:32:1152:12:432:-25.9759,0,-90.7448	0/1:140:74,66:74:2649:66:2357:-170.243,0,-196.51	0/0:137:137,0:137:4928:0:0:0,-41.2411,-443.668	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.957	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:65:36,29:36:1284:29:1044:-74.7079,0,-96.2965	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.757	0/1:46:23,23:23:828:23:824:-60.6359,0,-60.9967	0/1:70:44,26:44:1584:26:936:-63.4874,0,-121.779	0/1:59:22,37:22:783:37:1332:-102.422,0,-53.0322	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:58:27,31:27:960:31:1116:-83.292,0,-69.2565	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:171:85,86:85:3041:86:3077:-225.491,0,-222.442	0/1:176:111,65:111:3975:65:2320:-156.079,0,-304.958	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:56:56,0:56:1981:0:0:0,-16.8577,-178.563	0/0:59:55,4:55:1972:4:144:0,-4.44715,-164.439	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:256:255,1:255:9144:1:36:0,-73.4654,-819.333	0/0:274:274,0:274:9822:0:0:0,-82.4822,-883.921	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:303:143,160:143:5122:160:5733:-424.872,0,-369.908	0/1:86:58,28:58:2072:28:997:-64.1515,0,-160.862	0/1:86:51,35:51:1828:35:1248:-86.7357,0,-138.912	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:185:185,0:185:6635:0:0:0,-55.6905,-597.226	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:65:37,28:37:1324:28:992:-70.0274,0,-99.8951	0/1:65:34,31:34:1224:31:1116:-81.1847,0,-90.9001	0/1:68:37,31:37:1328:31:1112:-79.9213,0,-99.3522	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/1:92:48,44:48:1724:44:1581:-114.887,0,-127.751	0/0:193:191,2:191:6852:2:72:0,-51.2621,-609.911	0/0:113:113,0:113:4047:0:0:0,-34.0164,-364.417	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.133	0/0:135:135,0:135:4839:0:0:0,-40.639,-435.663	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:126:91,35:91:3264:35:1256:-75.4155,0,-256.05	0/0:45:45,0:45:1598:0:0:0,-13.5463,-144.109	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:62:32,30:32:1136:30:1069:-77.8486,0,-83.885	0/0:77:75,2:75:2688:2:72:0,-16.3426,-235.328	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:208:208,0:208:7464:0:0:0,-62.6142,-671.801	0/1:118:71,47:71:2552:47:1675:-115.515,0,-194.408	0/0:28:27,1:27:968:1:36:0,-4.83056,-83.8391	0/0:113:113,0:113:4048:0:0:0,-34.0164,-364.507	0/1:113:59,54:59:2124:54:1932:-140.14,0,-157.412	0/0:83:81,2:81:2895:2:72:0,-18.1488,-253.949	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.924	0/1:41:24,17:24:856:17:612:-43.0712,0,-65.0189	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/0:93:93,0:93:3324:0:0:0,-27.9958,-299.378	0/1:62:31,31:31:1108:31:1116:-82.0878,0,-81.3671	0/0:139:139,0:139:4966:0:0:0,-41.8432,-446.959	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:136:136,0:136:4876:0:0:0,-40.9401,-438.992	0/0:128:128,0:128:4565:0:0:0,-38.5318,-411.016	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/1:93:45,48:45:1616:48:1712:-126.37,0,-117.734	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/0:93:92,1:92:3312:1:36:0,-24.3975,-294.072	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:119:52,67:52:1860:67:2379:-178.457,0,-131.857	0/1:37:21,16:21:756:16:576:-41.0369,0,-57.2291	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/0:69:68,1:68:2419:1:26:0,-18.1712,-215.366	0/1:19:13,6:13:451:6:216:-14.0709,0,-35.2002	0/1:51:25,26:25:896:26:936:-69.2069,0,-65.6078	0/1:54:16,38:16:572:38:1364:-106.805,0,-35.5578	0/0:128:128,0:128:4567:0:0:0,-38.5318,-411.192	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.317
chr09	18830491	.	G	T	131185	PASS	AB=0.508691;ABP=5.84101;AC=136;AF=0.723404;AN=188;AO=6249;CIGAR=1X;DP=8403;DPB=8403;DPRA=0;EPP=13416.6;EPPR=4548.69;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.3607;MQMR=59.8553;NS=94;NUMALT=1;ODDS=0.0658346;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223372;QR=76454;RO=2149;RPL=6231;RPP=13416.6;RPPR=4548.69;RPR=18;RUN=1;SAF=0;SAP=13572.5;SAR=6249;SRF=0;SRP=4669.5;SRR=2149;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:61:1,60:1:36:60:2131:-188.346,-14.7646,0	1/1:71:0,71:0:0:71:2539:-228.64,-21.3731,0	1/1:142:2,140:2:72:140:5016:-444.596,-35.9095,0	1/1:164:3,161:3:108:161:5747:-507.086,-39.2938,0	0/1:58:34,24:34:1220:24:864:-60.6182,0,-92.6471	0/1:24:7,17:7:252:17:608:-47.7731,0,-15.8042	0/1:74:32,42:32:1144:42:1512:-113.868,0,-80.8954	1/1:147:6,140:6:216:140:4998:-429.946,-24.5197,0	0/1:133:76,57:76:2711:57:2030:-142.711,0,-204.196	1/1:66:0,66:0:0:66:2337:-210.33,-19.868,0	0/1:70:36,34:36:1275:34:1220:-89.0267,0,-93.9802	1/1:123:1,122:1:36:122:4379:-390.421,-33.4284,0	1/1:90:1,89:1:36:89:3192:-283.491,-23.4944,0	0/1:54:30,24:30:1064:24:852:-60.7401,0,-79.8114	0/1:79:46,33:46:1636:33:1182:-82.8978,0,-123.747	0/1:94:55,39:55:1950:39:1392:-97.1386,0,-147.473	0/1:31:25,6:25:888:6:212:-10.0929,0,-70.9071	0/1:47:24,23:24:843:23:820:-59.9613,0,-62.0396	1/1:37:0,37:0:0:37:1293:-116.473,-11.1381,0	0/1:190:78,112:78:2787:112:4008:-303.523,0,-193.874	1/1:154:2,152:2:72:152:5448:-483.529,-39.5219,0	0/1:117:82,35:82:2932:35:1256:-78.0948,0,-228.172	0/1:104:48,56:48:1711:56:2003:-149.203,0,-122.965	0/1:62:27,35:27:968:35:1260:-95.0324,0,-68.7735	1/1:138:0,138:0:0:138:4929:-443.714,-41.5421,0	0/1:243:111,131:111:3955:131:4661:-346.35,0,-282.847	0/1:271:132,139:132:4661:139:4984:-366.377,0,-338.056	0/1:46:32,14:32:1139:14:500:-31.4888,0,-88.971	0/1:288:140,148:140:4969:148:5273:-387.967,0,-360.665	1/1:65:0,65:0:0:65:2336:-210.3,-19.567,0	0/1:40:13,27:13:455:27:960:-74.6714,0,-29.2408	1/1:28:0,28:0:0:28:1004:-90.6263,-8.42884,0	0/1:25:9,16:9:320:16:557:-42.7296,0,-21.6166	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:22:11,11:11:387:11:384:-28.2638,0,-28.5433	0/1:235:116,119:116:4127:119:4251:-311.399,0,-300.603	1/1:133:1,132:1:36:132:4682:-417.655,-36.4387,0	0/1:62:22,39:22:776:39:1392:-106.812,0,-51.4398	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:67:3,64:3:108:64:2296:-196.787,-10.0938,0	1/1:60:0,60:0:0:60:2129:-191.872,-18.0618,0	0/1:168:88,80:88:3131:80:2858:-206.218,0,-231.441	0/1:64:31,33:31:1100:33:1188:-87.8764,0,-80.0444	0/1:49:26,23:26:932:23:828:-60.0605,0,-69.4445	1/1:83:0,83:0:0:83:2968:-267.212,-24.9855,0	0/1:139:58,81:58:2055:81:2888:-217.134,0,-143.378	1/1:113:0,113:0:0:113:4036:-363.047,-34.0164,0	1/1:148:0,148:0:0:148:5299:-476.585,-44.5524,0	0/1:104:45,59:45:1616:59:2116:-159.389,0,-114.423	1/1:87:0,87:0:0:87:3101:-279.307,-26.1896,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.13	1/1:118:0,118:0:0:118:4236:-380.085,-35.5215,0	1/1:40:0,40:0:0:40:1436:-129.481,-12.0412,0	1/1:3:0,3:0:0:3:104:-9.69942,-0.90309,0	1/1:121:0,121:0:0:121:4314:-387.972,-36.4246,0	0/1:47:31,16:31:1091:16:576:-38.0266,0,-84.3503	0/1:16:3,13:3:108:13:456:-36.5458,0,-5.25869	0/1:16:7,9:7:248:9:320:-24.3255,0,-17.8477	0/1:69:33,36:33:1180:36:1292:-95.7859,0,-84.8786	0/1:80:43,37:43:1531:37:1316:-94.6579,0,-114	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/1:131:59,72:59:2091:72:2550:-190.301,0,-149.02	1/1:85:3,82:3:108:82:2928:-253.667,-15.5124,0	0/1:66:27,39:27:960:39:1392:-105.687,0,-66.8483	1/1:73:0,73:0:0:73:2609:-234.674,-21.9752,0	0/1:119:60,59:60:2144:59:2116:-154.876,0,-157.359	1/1:110:4,106:4:144:106:3808:-329.305,-19.7997,0	1/1:56:0,56:0:0:56:2008:-180.978,-16.8577,0	1/1:70:2,68:2:72:68:2419:-211.083,-14.2354,0	0/1:48:25,23:25:892:23:824:-60.0317,0,-66.1502	0/1:21:11,10:11:383:10:360:-26.4169,0,-28.4816	1/1:124:0,124:0:0:124:4456:-401.166,-37.3277,0	0/1:77:39,38:39:1387:38:1364:-99.8814,0,-101.943	1/1:105:0,105:0:0:105:3718:-334.672,-31.6082,0	1/1:149:0,149:0:0:149:5322:-479.062,-44.8535,0	0/1:118:51,67:51:1803:67:2412:-181.793,0,-126.958	1/1:57:0,57:0:0:57:2052:-184.896,-17.1587,0	0/1:30:19,11:19:676:11:396:-26.9518,0,-52.1371	1/1:122:0,120:0:0:120:4295:-386.333,-36.1236,0	0/1:102:42,60:42:1500:60:2156:-163.357,0,-104.59	1/1:235:0,235:0:0:235:8384:-753.736,-70.7421,0	1/1:68:0,68:0:0:68:2436:-219.393,-20.47,0	1/1:83:0,83:0:0:83:2950:-265.722,-24.9855,0	0/1:54:26,28:26:936:28:1002:-74.2339,0,-68.3023	1/1:148:1,147:1:36:147:5272:-470.752,-40.9542,0	0/1:34:18,16:18:648:16:576:-41.9318,0,-48.4169	0/1:94:34,60:34:1220:60:2152:-165.425,0,-81.81	1/1:84:0,84:0:0:84:3007:-270.627,-25.2865,0	0/1:50:25,25:25:900:25:892:-65.539,0,-66.2695	0/1:122:57,65:57:2018:65:2324:-172.552,0,-145.166	0/1:110:65,45:65:2302:45:1608:-111.892,0,-174.326	1/1:105:0,105:0:0:105:3764:-338.457,-31.6082,0	1/1:146:1,145:1:36:145:5203:-464.681,-40.3521,0
chr09	18857465	.	G	C	30837.8	PASS	AB=0.492337;ABP=4.90735;AC=37;AF=0.198925;AN=186;AO=1845;CIGAR=1X;DP=8153;DPB=8153;DPRA=1.36392;EPP=4000.7;EPPR=13698.5;GTI=1;LEN=1;MEANALT=1.02326;MQM=58.9111;MQMR=59.9742;NS=93;NUMALT=1;ODDS=0.935094;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66167;QR=225737;RO=6307;RPL=1844;RPP=4000.7;RPPR=13698.5;RPR=1;RUN=1;SAF=1845;SAP=4009.38;SAR=0;SRF=6307;SRP=13698.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:13,8:13:468:8:288:-19.9425,0,-36.138	0/1:132:70,62:70:2500:62:2220:-160.304,0,-185.517	0/1:118:59,59:59:2082:59:2111:-154.709,0,-152.125	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/1:57:30,27:30:1065:27:960:-69.5432,0,-79.001	0/1:25:15,10:15:532:10:360:-25.2145,0,-40.6873	0/0:128:128,0:128:4554:0:0:0,-38.5318,-410.025	0/1:119:75,44:75:2684:44:1580:-105.192,0,-205.982	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.031	0/0:111:111,0:111:3942:0:0:0,-33.4143,-354.971	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:92:92,0:92:3288:0:0:0,-27.6948,-296.14	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.711	0/0:37:37,0:37:1305:0:0:0,-11.1381,-117.749	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:141:63,78:63:2259:78:2791:-208.948,0,-161.127	0/1:99:59,40:59:2101:40:1432:-99.36,0,-159.556	0/1:156:45,111:45:1612:111:3962:-307.959,0,-98.4094	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:101:94,7:94:3365:7:252:0,-7.38218,-280.042	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:266:140,125:140:5020:125:4479:-323.132,0,-371.853	0/0:129:129,0:129:4627:0:0:0,-38.8329,-416.591	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:242:146,96:146:5228:96:3448:-237.645,0,-397.809	0/1:141:61,80:61:2196:80:2876:-216.595,0,-155.46	0/0:83:82,1:82:2921:1:36:0,-21.3877,-259.526	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:5:2,3:2:68:3:108:-8.56877,0,-4.95256	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:4:1,3:1:36:3:108:-8.8698,0,-2.39415	0/1:5:3,2:3:108:2:72:-5.33073,0,-8.57002	0/1:186:88,98:88:3160:98:3520:-260.974,0,-228.633	0/1:246:129,117:129:4602:117:4200:-304.08,0,-340.289	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	.:.:.:.:.:.:.:.	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:129:129,0:129:4624:0:0:0,-38.8329,-416.323	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.027	0/1:63:35,28:35:1260:28:1008:-72.0602,0,-94.7406	0/1:61:35,26:35:1256:26:932:-65.8258,0,-94.9825	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.372	0/0:168:167,1:167:5958:1:36:0,-46.9752,-532.728	0/0:109:109,0:109:3903:0:0:0,-32.8123,-351.463	0/0:118:117,1:117:4208:1:36:0,-31.9237,-375.301	0/1:137:68,69:68:2430:69:2484:-182.544,0,-177.713	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:110:110,0:110:3951:0:0:0,-33.1133,-355.78	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:27:8,19:8:288:19:675:-52.9418,0,-18.1396	0/0:125:125,0:125:4467:0:0:0,-37.6287,-402.2	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:13:9,4:9:309:4:144:-9.39858,0,-24.2273	0/0:29:29,0:29:1021:0:0:0,-8.72987,-92.2003	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/1:129:67,62:67:2408:62:2223:-161.475,0,-178.143	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:247:247,0:247:8822:0:0:0,-74.3544,-792.607	0/1:199:101,98:101:3601:98:3515:-256.61,0,-264.391	0/0:86:83,3:83:2941:3:104:0,-16.1872,-255.22	0/1:75:48,27:48:1724:27:960:-64.1293,0,-132.868	0/1:106:73,33:73:2624:33:1180:-74.5861,0,-204.498	0/1:91:46,45:46:1652:45:1620:-118.678,0,-121.575	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:74:38,36:38:1364:36:1296:-94.649,0,-100.784	0/1:80:39,41:39:1400:41:1472:-108.677,0,-102.217	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:34:12,22:12:432:22:780:-60.2799,0,-28.9862	0/1:66:28,38:28:1008:38:1364:-103.178,0,-71.1684	0/1:150:80,70:80:2876:70:2507:-180.695,0,-213.922	0/0:159:159,0:159:5701:0:0:0,-47.8638,-513.205	0/1:152:64,88:64:2300:88:3164:-239.192,0,-161.504	0/1:118:49,69:49:1756:69:2484:-188.263,0,-122.802	0/1:9:5,4:5:180:4:144:-10.6027,0,-13.8428	0/0:126:125,1:125:4476:1:36:0,-34.3319,-396.688	0/0:104:104,0:104:3708:0:0:0,-31.3071,-333.921	0/0:186:186,0:186:6660:0:0:0,-55.9916,-599.477	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.484	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:140:140,0:140:5028:0:0:0,-42.1442,-452.664	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:111:59,52:59:2120:52:1868:-134.964,0,-156.291	0/1:61:24,37:24:864:37:1332:-101.799,0,-59.7197	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023
chr09	18964272	.	A	G	95785.7	PASS	AB=0.49422;ABP=3.81362;AC=135;AF=0.725806;AN=186;AO=4477;CIGAR=1X;DP=5891;DPB=5891;DPRA=0;EPP=9363.31;EPPR=2950.9;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.4088;MQMR=59.8967;NS=93;NUMALT=1;ODDS=1.90039;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159428;QR=50563;RO=1413;RPL=4435;RPP=9363.31;RPPR=2950.9;RPR=42;RUN=1;SAF=4477;SAP=9724.69;SAR=0;SRF=1413;SRP=3071.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:50:0,50:0:0:50:1783:-160.426,-15.0515,0	1/1:80:0,80:0:0:80:2855:-257.155,-24.0824,0	1/1:229:0,229:0:0:229:8163:-734.657,-68.9359,0	0/1:23:10,13:10:360:13:468:-35.536,0,-25.816	0/1:16:11,5:11:392:5:180:-11.7356,0,-30.8036	0/1:86:43,43:43:1544:43:1540:-112.997,0,-113.269	0/1:83:29,53:29:1040:53:1895:-145.699,0,-68.8701	0/1:74:44,30:44:1576:30:1080:-75.2118,0,-119.855	1/1:67:0,67:0:0:67:2385:-214.894,-20.169,0	0/1:18:13,5:13:468:5:176:-10.2654,0,-37.0411	1/1:69:0,69:0:0:69:2439:-219.726,-20.7711,0	1/1:78:0,78:0:0:78:2726:-245.556,-23.4803,0	0/1:48:18,30:18:644:30:1061:-81.3408,0,-43.8412	0/1:60:33,27:33:1184:27:972:-69.7279,0,-88.8065	0/1:46:24,22:24:839:22:783:-56.9409,0,-61.9799	0/1:27:9,18:9:324:18:644:-50.1546,0,-21.378	0/1:29:14,15:14:500:15:526:-38.7697,0,-36.6063	1/1:11:0,11:0:0:11:383:-34.8032,-3.31133,0	0/1:93:44,49:44:1580:49:1755:-130.237,0,-114.486	1/1:132:0,132:0:0:132:4718:-424.58,-39.736,0	0/1:55:38,17:38:1360:17:608:-38.4903,0,-106.143	0/1:82:35,47:35:1248:47:1680:-126.794,0,-87.9404	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	1/1:27:0,27:0:0:27:964:-86.9469,-8.12781,0	0/1:166:78,88:78:2788:88:3136:-232.186,0,-201.188	0/1:103:66,37:66:2360:37:1319:-87.9889,0,-181.591	0/1:22:9,13:9:324:13:460:-35.1127,0,-22.8379	0/1:178:97,81:97:3480:81:2904:-207.635,0,-259.827	1/1:105:1,104:1:36:104:3722:-330.819,-28.0099,0	0/1:77:31,46:31:1112:46:1627:-123.53,0,-77.212	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:20:14,6:14:500:6:212:-13.4042,0,-39.3156	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:156:85,71:85:3035:71:2535:-181.237,0,-226.408	1/1:80:0,80:0:0:80:2849:-256.576,-24.0824,0	0/1:32:16,16:16:572:16:572:-42.1641,0,-42.1805	.:.:.:.:.:.:.:.	1/1:136:1,135:1:36:135:4795:-427.817,-37.3418,0	1/1:16:0,16:0:0:16:572:-51.8088,-4.81648,0	0/1:87:45,42:45:1608:42:1508:-109.714,0,-118.816	0/1:42:24,18:24:864:18:633:-44.6518,0,-65.4393	0/1:53:27,26:27:964:26:928:-67.8813,0,-71.1222	1/1:69:0,69:0:0:69:2474:-222.609,-20.7711,0	0/1:41:19,22:19:680:22:777:-57.907,0,-49.1869	1/1:108:0,108:0:0:108:3849:-346.527,-32.5112,0	1/1:65:0,65:0:0:65:2299:-207.148,-19.567,0	0/1:83:39,44:39:1400:44:1565:-116.148,0,-101.314	1/1:99:0,99:0:0:99:3512:-316.264,-29.802,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:97:0,97:0:0:97:3464:-311.057,-29.1999,0	1/1:57:0,57:0:0:57:2038:-183.635,-17.1587,0	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	1/1:103:0,103:0:0:103:3679:-331.177,-31.0061,0	0/1:35:19,16:19:667:16:572:-41.2564,0,-49.8186	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:18:7,11:7:252:11:392:-30.2006,0,-17.6104	0/1:39:17,22:17:603:22:784:-59.1437,0,-42.8593	0/1:70:36,34:36:1283:34:1203:-87.5006,0,-94.7005	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:139:65,74:65:2336:74:2627:-194.826,0,-168.6	1/1:112:8,104:8:288:104:3719:-308.62,-7.44795,0	0/1:40:14,26:14:496:26:936:-72.5183,0,-32.9331	1/1:40:0,40:0:0:40:1430:-128.979,-12.0412,0	0/1:101:50,51:50:1788:51:1828:-134.127,0,-130.799	1/1:124:3,121:3:108:121:4328:-379.442,-27.2526,0	1/1:16:0,16:0:0:16:558:-50.532,-4.81648,0	1/1:34:0,34:0:0:34:1216:-109.734,-10.235,0	0/1:26:13,13:13:460:13:453:-33.271,0,-33.9086	0/1:11:5,6:5:180:6:216:-16.472,0,-13.2407	1/1:91:0,91:0:0:91:3216:-289.569,-27.3937,0	0/1:50:25,25:25:900:25:871:-63.6412,0,-66.2695	1/1:71:0,71:0:0:71:2532:-228.115,-21.3731,0	1/1:169:0,169:0:0:169:6034:-542.917,-50.8741,0	0/1:39:7,32:7:252:32:1152:-92.1549,0,-11.2888	1/1:61:0,61:0:0:61:2162:-194.836,-18.3628,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8345	1/1:85:0,85:0:0:85:3013:-271.157,-25.5876,0	0/1:107:49,58:49:1756:58:2076:-154.716,0,-126.114	1/1:137:0,137:0:0:137:4888:-440.039,-41.2411,0	1/1:44:0,44:0:0:44:1559:-140.59,-13.2453,0	1/1:58:0,58:0:0:58:2076:-187.093,-17.4597,0	0/1:33:18,15:18:644:15:536:-38.6376,0,-48.3566	1/1:112:1,111:1:36:111:3913:-348.735,-30.1171,0	0/1:20:10,10:10:356:10:352:-25.9976,0,-26.3606	0/1:48:27,21:27:968:21:711:-49.8395,0,-72.9879	1/1:47:0,47:0:0:47:1673:-149.64,-14.1484,0	0/1:25:11,14:11:396:14:496:-37.4467,0,-28.457	0/1:43:31,12:31:1112:12:428:-25.9145,0,-87.4471	0/1:69:56,13:56:2004:13:468:-21.6824,0,-159.862	1/1:122:0,122:0:0:122:4342:-390.941,-36.7257,0	1/1:80:0,80:0:0:80:2839:-255.724,-24.0824,0
chr09	18964386	.	T	C	111963	PASS	AB=0.538872;ABP=47.2413;AC=131;AF=0.704301;AN=186;AO=5234;CIGAR=1X;DP=6802;DPB=6802;DPRA=74.7253;EPP=11066.5;EPPR=3338.66;GTI=5;LEN=1;MEANALT=1.04396;MQM=59.9851;MQMR=60;NS=93;NUMALT=1;ODDS=0.284479;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187194;QR=55897;RO=1564;RPL=35;RPP=11066.5;RPPR=3338.66;RPR=5199;RUN=1;SAF=0;SAP=11368.5;SAR=5234;SRF=0;SRP=3399.19;SRR=1564;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:63:0,63:0:0:63:2241:-201.865,-18.9649,0	1/1:99:0,99:0:0:99:3556:-320.247,-29.802,0	1/1:178:0,178:0:0:178:6318:-568.714,-53.5833,0	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	0/1:67:30,37:30:1076:37:1324:-99.2931,0,-76.9838	0/1:83:50,33:50:1757:33:1179:-81.4317,0,-133.426	0/1:62:45,17:45:1616:17:603:-35.9356,0,-127.066	1/1:85:0,85:0:0:85:3042:-274.008,-25.5876,0	0/1:57:33,24:33:1184:24:856:-60.2024,0,-89.7096	1/1:85:0,85:0:0:85:3037:-273.559,-25.5876,0	1/1:79:0,79:0:0:79:2844:-256.197,-23.7814,0	0/1:89:48,41:48:1716:41:1476:-106.345,0,-127.934	0/1:72:37,35:37:1332:35:1260:-92.0313,0,-98.5082	0/1:68:22,45:22:780:45:1602:-123.94,0,-49.9944	0/1:40:23,17:23:828:17:612:-43.3722,0,-62.8029	0/1:35:15,20:15:540:20:720:-54.5927,0,-38.4005	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:83:33,50:33:1172:50:1781:-135.585,0,-80.802	1/1:138:0,138:0:0:138:4916:-442.591,-41.5421,0	0/1:45:26,19:26:936:19:684:-48.344,0,-71.0131	0/1:137:49,88:49:1737:88:3160:-243.383,0,-115.371	0/1:46:18,28:18:644:28:1008:-77.189,0,-44.4432	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	0/1:171:61,110:61:2169:110:3934:-302.775,0,-143.999	0/1:108:49,59:49:1740:59:2112:-157.838,0,-124.373	0/1:26:17,9:17:608:9:324:-21.6791,0,-47.2252	0/1:172:78,94:78:2789:94:3368:-251.559,0,-199.472	1/1:77:1,76:1:36:76:2724:-241.803,-19.581,0	0/1:97:40,57:40:1440:57:2031:-153.862,0,-100.698	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:171:84,87:84:3004:87:3115:-229.1,0,-219.116	1/1:113:0,113:0:0:113:4021:-362.079,-34.0164,0	0/1:54:23,31:23:824:31:1116:-84.4937,0,-58.2277	.:.:.:.:.:.:.:.	1/1:86:0,86:0:0:86:3063:-275.898,-25.8886,0	1/1:29:0,29:0:0:29:1031:-93.1026,-8.72987,0	0/1:97:44,53:44:1572:53:1899:-141.987,0,-112.572	0/1:46:24,22:24:860:22:788:-57.3974,0,-63.8745	0/1:40:20,20:20:707:20:712:-52.3655,0,-51.9134	1/1:98:0,98:0:0:98:3494:-314.671,-29.5009,0	0/1:54:19,35:19:684:35:1260:-97.4499,0,-45.6347	1/1:139:2,137:2:72:137:4894:-433.773,-35.0064,0	1/1:40:1,39:1:36:39:1392:-121.979,-8.44293,0	0/1:109:60,49:60:2156:49:1756:-125.512,0,-161.495	1/1:107:0,107:0:0:107:3847:-346.424,-32.2102,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:78:0,78:0:0:78:2783:-250.711,-23.4803,0	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:90:0,90:0:0:90:3205:-288.672,-27.0927,0	0/1:29:4,25:4:140:25:869:-69.7943,0,-4.21471	0/1:7:3,4:3:108:4:129:-9.82045,0,-7.96796	0/1:12:3,9:3:104:9:324:-25.8935,0,-6.09045	0/1:92:48,44:48:1712:44:1569:-113.806,0,-126.671	0/1:115:55,60:55:1968:60:2129:-157.259,0,-142.777	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:151:57,94:57:2024:94:3360:-257.161,0,-136.977	1/1:106:1,105:1:36:105:3757:-334.731,-28.3109,0	0/1:59:27,32:27:957:32:1140:-85.1468,0,-68.6831	1/1:57:0,57:0:0:57:2032:-183.153,-17.1587,0	0/1:151:56,95:56:2008:95:3408:-261.478,0,-135.538	1/1:130:1,129:1:36:129:4636:-413.803,-35.5356,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:46:21,25:21:752:25:896:-67.113,0,-54.1589	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3601	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	0/1:133:65,68:65:2321:68:2440:-179.781,0,-169.111	1/1:169:1,168:1:36:168:5997:-536.23,-47.2758,0	1/1:171:0,170:0:0:170:6086:-547.48,-51.1751,0	0/1:44:19,24:19:680:24:852:-63.6965,0,-48.2252	1/1:102:3,99:3:104:99:3548:-309.825,-21.0023,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:99:0,99:0:0:99:3530:-317.907,-29.802,0	0/1:65:22,43:22:788:43:1540:-119.326,0,-51.6778	1/1:179:0,179:0:0:179:6411:-577.076,-53.8844,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:82:0,82:0:0:82:2928:-263.752,-24.6845,0	0/1:44:14,30:14:504:30:1076:-83.9075,0,-32.4528	1/1:105:0,105:0:0:105:3749:-337.609,-31.6082,0	0/1:23:18,5:18:648:5:180:-9.62837,0,-51.7282	0/1:51:27,24:27:960:24:856:-62.0086,0,-71.3637	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:62:33,29:33:1188:29:1044:-75.6109,0,-88.5647	0/1:121:50,71:50:1792:71:2536:-192.067,0,-125.138	0/1:51:35,16:35:1256:16:576:-36.8225,0,-97.9928	1/1:110:0,110:0:0:110:3944:-355.15,-33.1133,0	1/1:72:0,71:0:0:71:2552:-229.57,-21.3731,0
chr09	18964402	.	T	C	25566.2	PASS	AB=0.460618;ABP=49.1889;AC=55;AF=0.295699;AN=186;AO=1589;CIGAR=1X;DP=6941;DPB=6941;DPRA=0.775266;EPP=3436.13;EPPR=11509.9;GTI=6;LEN=1;MEANALT=1.01724;MQM=59.9987;MQMR=59.9847;NS=93;NUMALT=1;ODDS=1.0739;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56690;QR=191534;RO=5351;RPL=1587;RPP=3436.13;RPPR=11509.9;RPR=2;RUN=1;SAF=0;SAP=3453.48;SAR=1589;SRF=0;SRP=11622.6;SRR=5351;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:64:64,0:64:2300:0:0:0,-19.2659,-206.405	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/0:182:182,0:182:6540:0:0:0,-54.7875,-588.679	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:67:38,29:38:1368:29:1025:-72.3917,0,-103.252	0/1:87:35,52:35:1241:52:1857:-141.218,0,-85.8029	0/1:62:18,44:18:648:44:1584:-124.188,0,-39.988	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/1:58:24,34:24:864:34:1211:-91.8358,0,-60.6228	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726	0/1:91:43,48:43:1540:48:1722:-127.871,0,-111.499	0/1:74:36,38:36:1292:38:1368:-101.145,0,-94.3075	0/1:66:45,21:45:1601:21:752:-48.1383,0,-124.51	0/1:42:17,25:17:612:25:898:-68.4975,0,-42.7702	0/1:36:19,17:19:680:17:612:-44.5764,0,-50.6921	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:85:50,35:50:1751:35:1245:-86.7652,0,-132.28	0/0:141:141,0:141:5019:0:0:0,-42.4452,-451.854	0/1:45:19,26:19:684:26:936:-71.0131,0,-48.344	0/1:140:88,52:88:3145:52:1864:-125.895,0,-241.13	0/1:48:30,18:30:1076:18:648:-44.2024,0,-82.7034	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.24	0/1:175:114,61:114:4100:61:2161:-142.075,0,-316.503	0/1:108:60,48:60:2141:48:1686:-119.511,0,-160.445	0/1:26:9,17:9:324:17:612:-47.5867,0,-21.6791	0/1:182:101,81:101:3609:81:2886:-205.186,0,-270.227	0/0:78:77,1:77:2768:1:36:0,-19.8821,-245.762	0/1:98:57,41:57:2052:41:1460:-102.195,0,-155.45	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:15:7,8:7:237:8:273:-20.3847,0,-17.1436	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:174:89,85:89:3200:85:3013:-219.019,0,-235.843	0/0:117:117,0:117:4193:0:0:0,-35.2205,-377.549	0/1:53:31,22:31:1112:22:792:-55.6511,0,-84.4358	.:.:.:.:.:.:.:.	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.989	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:98:53,45:53:1889:45:1616:-116.229,0,-140.781	0/1:46:22,24:22:792:24:860:-63.8745,0,-57.7583	0/1:42:20,22:20:720:22:788:-58.6014,0,-52.4855	0/0:98:98,0:98:3505:0:0:0,-29.5009,-315.659	0/1:54:36,18:36:1277:18:644:-42.035,0,-98.9755	0/0:141:139,2:139:4989:2:72:0,-35.6085,-442.318	0/0:42:41,1:41:1461:1:36:0,-9.04498,-128.186	0/1:109:49,60:49:1764:60:2147:-160.685,0,-126.231	0/0:109:109,0:109:3901:0:0:0,-32.8123,-351.282	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:28:24,4:24:849:4:140:-4.51574,0,-68.299	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:12:9,3:9:324:3:99:-5.62422,0,-25.8935	0/1:93:43,50:43:1548:50:1792:-133.567,0,-111.617	0/1:117:60,57:60:2156:57:2052:-149.731,0,-159.086	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:154:96,58:96:3433:58:2014:-135.166,0,-262.823	0/0:108:107,1:107:3818:1:36:0,-28.913,-340.216	0/1:60:32,28:32:1152:28:1008:-72.9746,0,-85.9237	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.952	0/1:155:97,58:97:3477:58:2050:-138.108,0,-266.48	0/0:135:135,0:135:4821:0:0:0,-40.639,-434.044	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:48:26,22:26:936:22:792:-57.1562,0,-70.11	0/1:22:11,11:11:392:11:396:-29.3601,0,-28.9974	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:137:73,64:73:2620:64:2277:-163.949,0,-194.72	0/0:175:175,0:175:6250:0:0:0,-52.6802,-562.588	0/0:172:172,0:172:6135:0:0:0,-51.7772,-552.247	0/1:45:26,19:26:936:19:684:-48.344,0,-71.0131	0/0:104:101,3:101:3617:3:108:0,-21.2319,-315.658	0/1:8:1,7:1:36:7:237:-19.2508,0,-1.19003	0/0:101:101,0:101:3598:0:0:0,-30.404,-324.024	0/1:64:42,22:42:1504:22:792:-52.3398,0,-116.389	0/0:185:185,0:185:6583:0:0:0,-55.6905,-592.55	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/1:44:30,14:30:1080:14:504:-32.4528,0,-84.2679	0/0:104:104,0:104:3740:0:0:0,-31.3071,-336.799	0/1:24:5,19:5:180:19:684:-54.6656,0,-9.32734	0/1:51:24,26:24:860:26:921:-67.9384,0,-62.4544	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123	0/1:62:29,33:29:1044:33:1184:-88.2045,0,-75.6109	0/1:122:71,51:71:2548:51:1832:-128.435,0,-192.845	0/1:54:17,37:17:612:37:1316:-102.486,0,-39.1578	0/0:113:113,0:113:4003:0:0:0,-34.0164,-360.455	0/0:75:75,0:75:2681:0:0:0,-22.5772,-241.533
chr09	18987313	.	A	G	235790	PASS	AB=0.574686;ABP=296.229;AC=66;AF=0.351064;AN=188;AO=11432;CIGAR=1X;DP=19353;DPB=19353;DPRA=1.97382;EPP=24827.3;EPPR=17183.7;GTI=16;LEN=1;MEANALT=1.10938;MQM=59.5947;MQMR=59.9767;NS=94;NUMALT=1;ODDS=1.21254;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=408465;QR=283360;RO=7912;RPL=0;RPP=24827.3;RPPR=17183.7;RPR=11432;RUN=1;SAF=11432;SAP=24827.3;SAR=0;SRF=7912;SRP=17183.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1137:0:0:0,-9.63296,-102.637	0/0:127:127,0:127:4568:0:0:0,-38.2308,-411.283	0/0:179:179,0:179:6409:0:0:0,-53.8844,-576.896	0/0:268:267,0:267:9600:0:0:0,-80.375,-863.588	0/1:85:32,53:32:1152:53:1878:-143.699,0,-78.4026	0/1:85:55,30:55:1972:30:1072:-71.0064,0,-152.167	0/1:155:83,72:83:2984:72:2592:-186.642,0,-222.132	0/1:216:118,98:118:4225:98:3451:-245.762,0,-315.406	0/1:95:39,54:39:1396:54:1921:-144.801,0,-97.5836	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.486	0/1:318:49,269:49:1764:269:9613:-768.992,0,-63.3162	0/0:72:72,0:72:2562:0:0:0,-21.6742,-230.827	0/0:70:69,1:69:2465:1:36:0,-17.4738,-218.504	0/1:94:51,43:51:1832:43:1544:-110.956,0,-136.864	0/1:68:27,41:27:968:41:1457:-110.921,0,-66.9488	0/1:80:33,47:33:1169:47:1684:-127.751,0,-81.4329	0/1:89:45,44:45:1582:44:1584:-116.052,0,-115.867	0/1:64:35,29:35:1260:29:1044:-75.0007,0,-94.4396	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:247:100,147:100:3596:147:5265:-399.598,0,-249.491	0/0:168:168,0:168:6032:0:0:0,-50.573,-542.982	0/1:157:46,110:46:1656:110:3910:-304.716,0,-102.008	0/1:52:23,29:23:824:29:1040:-78.1309,0,-58.8298	0/1:103:56,47:56:2012:47:1688:-121.177,0,-150.347	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:312:136,176:136:4868:176:6289:-471.706,0,-344.346	0/1:190:85,105:85:3044:105:3738:-279.36,0,-216.989	0/1:31:19,12:19:684:12:432:-29.8893,0,-52.5584	0/1:331:138,193:138:4944:193:6924:-523.55,0,-345.469	0/0:194:194,0:194:6933:0:0:0,-58.3998,-624.036	0/1:151:85,65:85:3052:65:2332:-164.619,0,-229.394	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:747:10,737:10:360:737:26263:-2330.06,-192.125,0	1/1:1037:12,1025:12:424:1025:36587:-3252.47,-273.672,0	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	1/1:785:2,781:2:72:781:27909:-2503.58,-229.23,0	0/1:177:106,71:106:3801:71:2556:-176.988,0,-289.003	0/0:184:183,1:183:6542:1:36:0,-51.7912,-585.257	0/1:260:30,230:30:1065:230:8248:-663.979,0,-17.892	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:170:169,1:169:6076:1:36:0,-47.5768,-543.341	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:145:67,78:67:2408:78:2796:-208.231,0,-173.327	0/1:64:36,28:36:1296:28:996:-70.254,0,-97.678	0/1:52:25,27:25:900:27:968:-71.7652,0,-65.6675	0/0:128:128,0:128:4573:0:0:0,-38.5318,-411.735	0/1:150:91,59:91:3257:59:2120:-145.711,0,-248.194	0/0:170:169,1:169:6041:1:36:0,-47.5768,-540.195	0/0:144:144,0:144:5172:0:0:0,-43.3483,-465.618	0/1:186:95,91:95:3393:91:3253:-236.811,0,-249.592	0/0:228:228,0:228:8149:0:0:0,-68.6348,-733.425	1/1:930:12,917:12:432:917:32826:-2912.95,-240.796,0	0/0:190:190,0:190:6801:0:0:0,-57.1957,-612.144	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	1/1:819:8,810:8:288:810:28908:-2573.21,-220.335,0	0/0:216:216,0:216:7734:0:0:0,-65.0225,-696.08	0/1:30:5,25:5:176:25:900:-72.2901,0,-7.15412	1/1:650:7,643:7:248:643:22952:-2042.01,-173.005,0	1/1:733:15,718:15:540:718:25584:-2252.64,-171.718,0	0/1:117:62,55:62:2213:55:1965:-141.703,0,-164.212	0/1:127:71,56:71:2548:56:2000:-141.435,0,-191.34	1/1:676:1,675:1:36:675:24156:-2168.23,-199.898,0	0/1:187:131,56:131:4681:56:1997:-123.682,0,-365.157	0/0:257:256,1:256:9150:1:36:0,-73.7664,-819.802	0/1:96:40,56:40:1432:56:2000:-151.366,0,-100.279	0/0:114:114,0:114:4076:0:0:0,-34.3174,-367.024	0/1:145:79,66:79:2825:66:2343:-167.472,0,-210.832	0/0:132:127,5:127:4548:5:180:0,-23.1839,-392.934	0/1:35:31,4:31:1082:4:144:-2.77757,0,-87.1486	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.692	0/1:89:46,43:46:1648:43:1544:-112.437,0,-121.817	1/1:650:17,633:17:612:633:22597:-1975.18,-140.256,0	0/0:124:124,0:124:4441:0:0:0,-37.3277,-399.851	0/1:85:51,34:51:1836:34:1197:-82.4459,0,-139.933	0/0:199:199,0:199:7125:0:0:0,-59.905,-641.29	0/0:233:233,0:233:8338:0:0:0,-70.14,-750.424	0/1:180:78,102:78:2800:102:3664:-275.733,0,-198.054	0/0:168:168,0:168:5961:0:0:0,-50.573,-536.594	1/1:661:16,645:16:572:645:23057:-2022.1,-147.167,0	0/0:166:164,2:164:5881:2:72:0,-43.1391,-522.565	0/1:139:65,74:65:2328:74:2656:-197.426,0,-167.919	0/0:205:204,1:204:7298:1:36:0,-58.1197,-653.27	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/1:83:44,39:44:1580:39:1400:-100.45,0,-117.506	0/0:156:155,1:155:5542:1:36:0,-43.3624,-495.299	0/1:39:24,15:24:864:15:540:-37.1964,0,-66.3424	0/1:77:45,32:45:1616:32:1148:-80.4505,0,-122.551	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.701	1/1:389:33,356:33:1188:356:12763:-1040.99,-9.87208,0	0/1:576:54,522:54:1940:522:18664:-1505.2,0,-1.35323	0/1:81:31,50:31:1112:50:1766:-134.824,0,-76.0079	0/0:118:118,0:118:4244:0:0:0,-35.5215,-382.137	0/0:85:85,0:85:3041:0:0:0,-25.5875,-273.912
chr09	19067852	.	A	T	37335.4	PASS	AB=0.522722;ABP=21.6607;AC=50;AF=0.265957;AN=188;AO=2194;CIGAR=1X;DP=8519;DPB=8519;DPRA=1.25304;EPP=4767.22;EPPR=13724.5;GTI=2;LEN=1;MEANALT=1.08621;MQM=59.9654;MQMR=59.9941;NS=94;NUMALT=1;ODDS=0.962208;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78516;QR=222922;RO=6319;RPL=0;RPP=4767.22;RPPR=13724.5;RPR=2194;RUN=1;SAF=2194;SAP=4767.22;SAR=0;SRF=6319;SRP=13724.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1150:0:0:0,-9.93399,-103.802	0/0:91:91,0:91:3236:0:0:0,-27.3937,-291.463	0/0:175:175,0:175:6179:0:0:0,-52.6802,-556.213	0/0:278:276,1:276:9789:1:36:0,-80.0719,-877.436	0/1:69:32,37:32:1133:37:1316:-97.9483,0,-81.5056	0/1:35:19,16:19:680:16:576:-41.6389,0,-50.9931	0/1:70:36,34:36:1253:34:1224:-89.3949,0,-91.998	0/1:205:97,108:97:3426:108:3861:-285.974,0,-246.843	0/1:67:31,36:31:1108:36:1288:-96.0546,0,-79.862	0/0:91:91,0:91:3185:0:0:0,-27.3937,-286.87	0/1:26:13,13:13:460:13:464:-34.2707,0,-33.9086	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.924	0/0:62:61,0:61:2141:0:0:0,-18.3628,-192.597	0/1:39:19,20:19:684:20:713:-52.7564,0,-50.1502	0/1:61:37,24:37:1302:24:856:-58.9977,0,-99.1145	0/1:44:24,20:24:852:20:716:-51.5224,0,-63.7551	0/1:31:15,16:15:536:16:568:-42.0822,0,-39.2429	0/1:34:20,14:20:693:14:504:-35.4631,0,-52.4546	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:221:106,115:106:3697:115:4128:-305.175,0,-266.404	0/0:144:144,0:144:5087:0:0:0,-43.3483,-457.976	0/1:140:58,81:58:2023:81:2893:-218.402,0,-140.135	0/0:72:72,0:72:2485:0:0:0,-21.6742,-223.898	0/1:54:41,13:41:1445:13:468:-26.204,0,-114.088	0/0:54:54,0:54:1913:0:0:0,-16.2556,-172.445	0/1:306:145,161:145:5071:161:5752:-425.68,0,-364.42	0/1:194:72,121:72:2542:121:4352:-333.394,0,-170.57	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:292:133,159:133:4721:159:5693:-424.586,0,-337.151	0/0:168:167,1:167:5873:1:36:0,-46.9748,-525.086	0/1:86:40,46:40:1424:46:1652:-123.08,0,-102.569	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/1:131:73,58:73:2585:58:2072:-147.314,0,-193.408	0/0:166:166,0:166:5825:0:0:0,-49.971,-524.368	0/1:34:14,20:14:496:20:712:-54.1716,0,-34.7392	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:219:216,3:216:7588:3:108:0,-55.8504,-672.871	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/1:182:86,96:86:3061:96:3436:-254.666,0,-220.931	0/1:52:28,24:28:996:24:864:-62.429,0,-74.3013	0/1:40:26,14:26:936:14:504:-33.6569,0,-72.5183	0/0:121:121,0:121:4260:0:0:0,-36.4246,-383.578	0/1:162:74,88:74:2614:88:3136:-233.538,0,-186.739	0/0:194:193,1:193:6800:1:36:0,-54.8015,-608.481	0/0:75:75,0:75:2654:0:0:0,-22.5772,-239.104	0/1:116:54,62:54:1928:62:2197:-163.075,0,-138.877	0/0:120:120,0:120:4232:0:0:0,-36.1236,-381.059	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:201:201,0:201:7003:0:0:0,-60.507,-630.339	0/0:87:87,0:87:3090:0:0:0,-26.1896,-278.326	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:137:137,0:137:4878:0:0:0,-41.2411,-439.172	0/1:23:10,13:10:356:13:468:-35.536,0,-25.4576	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:118:45,73:45:1567:73:2612:-199.806,0,-105.793	0/1:72:33,38:33:1180:38:1339:-99.0743,0,-84.7752	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:237:99,138:99:3498:138:4942:-373.586,0,-243.687	0/0:196:191,5:191:6726:5:180:0,-42.4498,-588.866	0/1:95:46,49:46:1610:49:1733:-127.655,0,-116.587	0/0:111:110,1:110:3875:1:36:0,-29.8161,-345.347	0/1:158:96,62:96:3413:62:2228:-153.221,0,-259.822	0/0:129:127,2:127:4430:2:72:0,-31.9961,-392.036	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.11	0/1:28:15,13:15:528:13:468:-34.0308,0,-39.4225	0/1:20:12,8:12:413:8:288:-20.2468,0,-31.4772	0/0:129:129,0:129:4563:0:0:0,-38.8329,-410.836	0/1:69:37,31:37:1313:31:1112:-79.5615,0,-97.64	0/0:111:111,0:111:3869:0:0:0,-33.4143,-348.406	0/0:186:186,0:186:6558:0:0:0,-55.9916,-590.303	0/1:200:87,113:87:3032:113:4060:-305.38,0,-212.903	0/0:108:108,0:108:3800:0:0:0,-32.5112,-342.197	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:132:132,0:132:4710:0:0:0,-39.736,-424.058	0/1:152:77,75:77:2703:75:2669:-194.698,0,-197.755	0/0:127:125,2:125:4434:2:72:0,-31.3941,-392.395	0/0:49:49,0:49:1718:0:0:0,-14.7505,-154.901	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/1:35:15,20:15:536:20:720:-54.5927,0,-38.0388	0/0:113:112,1:112:4012:1:36:0,-30.4181,-357.671	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	0/1:57:28,29:28:1000:29:1044:-77.1161,0,-73.1567	0/0:50:50,0:50:1772:0:0:0,-15.0515,-159.763	0/1:27:7,20:7:252:20:720:-57.001,0,-14.9011	0/1:60:27,33:27:960:33:1184:-88.8065,0,-68.6545	0/1:54:24,30:24:860:30:1076:-80.8972,0,-61.4662	0/0:137:137,0:137:4779:0:0:0,-41.2411,-430.268	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914
chr09	19110192	.	TCAG	CCAA,TCAA	131727	PASS	AB=0.524697,0.469979;ABP=20.9222,29.4771;AC=137,51;AF=0.728723,0.271277;AN=188;AO=4712,1601;CIGAR=1X2M1X,3M1X;DP=6345;DPB=6344.75;DPRA=0,1.023;EPP=10217.6,3479.54;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.92553,2.2931;MQM=59.621,59.9475;MQMR=60;NS=94;NUMALT=2;ODDS=1.43426;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165076,56787;QR=36;RO=1;RPL=2,0;RPP=10217.6,3479.54;RPPR=5.18177;RPR=4710,1601;RUN=1,1;SAF=0,0;SAP=10235,3479.54;SAR=4712,1601;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32,0:0:0:32,0:1115,0:-100.647,-9.63296,0,-100.647,-9.63296,-100.647	1/1:33:0,32,0:0:0:32,0:1117,0:-100.592,-9.63296,0,-100.592,-9.63296,-100.592	1/1:124:0,124,0:0:0:124,0:4297,0:-386.833,-37.3277,0,-386.833,-37.3277,-386.833	1/1:88:0,88,0:0:0:88,0:3105,0:-279.68,-26.4906,0,-279.68,-26.4906,-279.68	1/2:26:0,20,6:0:0:20,6:713,208:-75.3757,-17.2529,-11.2323,-58.4715,0,-56.6654	1/2:20:0,9,11:0:0:9,11:319,392:-58.2843,-32.3087,-29.5995,-26.3307,0,-23.0193	1/2:24:0,11,13:0:0:11,13:389,468:-70.2217,-38.5463,-35.2349,-32.0318,0,-28.1184	1/2:85:0,32,53:0:0:32,53:1114,1864:-242.658,-152.082,-142.449,-90.9252,0,-74.9706	1/2:28:0,12,16:0:0:12,16:403,541:-76.8253,-44.1903,-40.5779,-32.9717,0,-28.1552	1/1:60:0,60,0:0:0:60,0:2091,0:-188.447,-18.0618,0,-188.447,-18.0618,-188.447	1/2:110:0,63,47:0:0:63,47:2205,1692:-317.806,-138.418,-119.454,-179.744,0,-165.595	1/1:91:0,91,0:0:0:91,0:3159,0:-284.483,-27.3937,0,-284.483,-27.3937,-284.483	1/1:95:0,94,1:0:0:94,1:3285,36:-295.454,-28.2968,0,-292.516,-24.9996,-292.215	1/2:108:0,48,59:0:0:48,59:1673,2104:-307.545,-171.509,-157.06,-136.029,0,-118.268	1/2:54:0,33,21:0:0:33,21:1156,730:-153.756,-59.6978,-49.7638,-94.4071,0,-88.0855	1/2:128:0,70,58:0:0:70,58:2447,2032:-364.624,-165.691,-144.619,-199.282,0,-181.822	1/2:43:0,21,22:0:0:21,22:746,792:-125.749,-64.983,-58.6614,-61.123,0,-54.5003	1/2:36:0,14,20:0:0:14,20:477,699:-95.5311,-56.8448,-52.6304,-38.6732,0,-32.6526	1/1:61:0,61,0:0:0:61,0:2141,0:-192.93,-18.3628,0,-192.93,-18.3628,-192.93	1/2:145:0,67,77:0:0:67,77:2363,2741:-415.791,-223.392,-203.223,-192.393,0,-169.214	1/1:75:0,75,0:0:0:75,0:2639,0:-237.723,-22.5773,0,-237.723,-22.5773,-237.723	1/2:38:0,15,23:0:0:15,23:525,820:-109.911,-67.1988,-62.6834,-43.0645,0,-36.1409	1/1:20:0,20,0:0:0:20,0:680,0:-61.5127,-6.0206,0,-61.5127,-6.0206,-61.5127	1/2:15:0,8,7:0:0:8,7:280,252:-43.6979,-20.9217,-18.5135,-23.1313,0,-21.0241	1/1:19:0,18,0:0:0:18,0:640,0:-57.5684,-5.41854,0,-57.5684,-5.41854,-57.5684	1/2:133:0,75,57:0:0:75,57:2653,2048:-383.15,-167.07,-144.492,-216.077,0,-198.918	1/2:217:0,147,70:0:0:147,70:5187,2512:-627.498,-205.26,-161.008,-422.595,0,-401.523	1/2:18:0,10,8:0:0:10,8:356,284:-52.5108,-23.4951,-20.4848,-29.3709,0,-26.9627	1/2:163:0,94,67:0:0:94,67:3291,2375:-461.217,-193.482,-165.185,-267.733,0,-247.564	1/1:82:0,82,0:0:0:82,0:2858,0:-257.351,-24.6845,0,-257.351,-24.6845,-257.351	1/2:25:0,13,12:0:0:13,12:458,428:-72.532,-35.2464,-31.3331,-37.64,0,-34.0276	1/1:11:0,11,0:0:0:11,0:388,0:-35.2478,-3.31133,0,-35.2478,-3.31133,-35.2478	1/2:19:0,12,7:0:0:12,7:417,252:-54.8064,-20.9217,-17.3094,-34.2399,0,-32.1327	1/2:9:0,2,7:0:0:2,7:72,243:-25.978,-20.1003,-19.4982,-6.23466,0,-4.12745	1/1:12:0,12,0:0:0:12,0:424,0:-38.4881,-3.61236,0,-38.4881,-3.61236,-38.4881	1/2:31:0,15,15:0:0:15,15:527,531:-86.1855,-43.2914,-38.776,-42.9327,0,-38.4173	1/2:143:0,76,66:0:0:76,66:2670,2346:-408.625,-191.318,-168.44,-217.447,0,-197.579	1/1:61:0,61,0:0:0:61,0:2151,0:-193.839,-18.3628,0,-193.839,-18.3628,-193.839	1/2:72:0,39,33:0:0:39,33:1374,1179:-208.208,-96.4841,-84.7439,-112.078,0,-102.144	1/1:8:0,8,0:0:0:8,0:281,0:-25.6302,-2.40824,0,-25.6302,-2.40824,-25.6302	1/1:66:0,66,0:0:0:66,0:2311,0:-208.234,-19.868,0,-208.234,-19.868,-208.234	1/1:67:0,66,0:0:0:66,0:2328,0:-209.4,-19.868,0,-209.4,-19.868,-209.4	1/2:131:0,71,60:0:0:71,60:2451,2122:-372.208,-173.187,-151.814,-199.371,0,-181.309	1/2:29:1,18,10:1:36:18,10:642,360:-78.4671,-26.4368,-23.9556,-49.3927,0,-49.32	1/2:34:0,21,12:0:0:21,12:749,413:-94.6497,-33.5821,-27.2605,-61.1117,0,-57.4994	1/1:62:0,61,0:0:0:61,0:2155,0:-193.855,-18.3628,0,-193.855,-18.3628,-193.855	1/2:77:0,42,33:0:0:42,33:1451,1179:-213.976,-96.1429,-83.4997,-117.913,0,-107.979	1/1:101:0,101,0:0:0:101,0:3569,0:-321.414,-30.404,0,-321.414,-30.404,-321.414	1/1:61:0,61,0:0:0:61,0:2147,0:-193.483,-18.3628,0,-193.483,-18.3628,-193.483	1/2:93:0,33,60:0:0:33,60:1152,2152:-269.568,-175.872,-165.938,-94.0489,0,-75.9871	1/1:35:0,35,0:0:0:35,0:1242,0:-112.084,-10.5361,0,-112.084,-10.5361,-112.084	1/2:23:0,7,16:0:0:7,16:252,572:-67.5526,-46.9969,-44.8897,-20.9146,0,-16.0982	1/1:137:0,136,0:0:0:136,0:4810,0:-432.693,-40.9401,0,-432.693,-40.9401,-432.693	1/1:57:0,57,0:0:0:57,0:1997,0:-180.002,-17.1587,0,-180.002,-17.1587,-180.002	1/2:14:0,8,6:0:0:8,6:285,212:-40.8505,-17.6186,-15.2104,-23.5863,0,-21.7801	1/1:111:0,110,0:0:0:110,0:3806,0:-342.249,-33.1133,0,-342.249,-33.1133,-342.249	1/1:1:0,1,0:0:0:1,0:32,0:-3.19931,-0.30103,0,-3.19931,-0.30103,-3.19931	1/2:15:0,10,5:0:0:10,5:350,176:-43.1552,-14.6799,-11.6696,-28.8265,0,-27.3214	1/2:14:0,5,9:0:0:5,9:174,300:-38.7672,-24.6137,-23.1085,-14.4961,0,-11.7868	1/2:34:0,18,16:0:0:18,16:624,559:-96.5316,-45.8203,-40.4018,-51.0593,0,-46.2428	1/2:141:0,76,65:0:0:76,65:2666,2290:-403.705,-186.792,-163.914,-217.265,0,-197.698	1/2:7:0,5,2:0:0:5,2:179,72:-20.8306,-6.23466,-4.72951,-14.9552,0,-14.3532	1/2:108:0,51,55:0:0:51,55:1781,1959:-304.474,-159.668,-144.316,-144.799,0,-128.242	1/1:71:0,68,2:0:0:68,2:2373,63:-213.494,-20.47,0,-208.447,-15.4467,-207.845	1/2:47:0,26,21:0:0:26,21:898,748:-134.266,-61.3237,-53.4969,-73.2932,0,-66.9715	1/1:65:0,65,0:0:0:65,0:2292,0:-206.541,-19.567,0,-206.541,-19.567,-206.541	1/2:94:0,50,44:0:0:50,44:1733,1554:-267.726,-126.905,-111.853,-141.171,0,-127.925	1/1:107:0,107,0:0:0:107,0:3739,0:-336.705,-32.2102,0,-336.705,-32.2102,-336.705	1/1:95:0,93,1:0:0:93,1:3235,36:-291.011,-27.9958,0,-288.073,-25.0334,-287.772	1/1:54:0,54,0:0:0:54,0:1852,0:-166.931,-16.2556,0,-166.931,-16.2556,-166.931	1/2:56:0,37,17:0:0:37,17:1295,608:-155.022,-49.6598,-38.5217,-105.442,0,-100.324	1/2:25:0,17,8:0:0:17,8:607,288:-73.341,-23.8592,-18.7417,-49.8407,0,-47.4324	1/1:91:0,90,0:0:0:90,0:3151,0:-283.42,-27.0927,0,-283.42,-27.0927,-283.42	1/2:39:0,17,22:0:0:17,22:565,775:-109.153,-63.4485,-58.331,-46.0452,0,-39.4225	1/1:47:0,46,1:0:0:46,1:1607,36:-144.554,-13.8474,0,-141.616,-10.5501,-141.315	1/1:142:0,141,0:0:0:141,0:4994,0:-449.219,-42.4452,0,-449.219,-42.4452,-449.219	1/2:69:0,42,27:0:0:42,27:1479,952:-198.259,-77.8674,-65.2241,-120.744,0,-112.616	1/1:104:0,102,0:0:0:102,0:3582,0:-322.215,-30.7051,0,-322.215,-30.7051,-322.215	1/2:37:0,15,21:0:0:15,21:500,756:-102.135,-61.6858,-57.1703,-40.4346,0,-34.113	1/1:70:0,65,5:0:0:65,5:2267,180:-203.915,-19.567,0,-189.227,-4.52004,-187.722	1/2:62:0,33,29:0:0:33,29:1158,1044:-179.759,-85.5449,-75.6109,-94.5698,0,-85.8399	1/1:102:0,101,1:0:0:101,1:3533,36:-317.816,-30.404,0,-314.878,-27.1068,-314.577	1/1:48:0,47,0:0:0:47,0:1629,0:-146.67,-14.1484,0,-146.67,-14.1484,-146.67	1/1:93:0,92,0:0:0:92,0:3263,0:-293.527,-27.6948,0,-293.527,-27.6948,-293.527	1/2:23:0,14,9:0:0:14,9:496,311:-66.0242,-25.6151,-21.4007,-40.7579,0,-38.0487	1/1:88:0,87,1:0:0:87,1:3062,36:-275.425,-26.1896,0,-272.488,-22.8924,-272.187	1/2:13:0,5,8:0:0:5,8:179,288:-38.4558,-23.8592,-22.354,-14.9552,0,-12.547	1/2:65:0,31,34:0:0:31,34:1072,1188:-184.084,-96.9871,-87.6552,-87.4446,0,-77.2096	1/1:67:0,67,0:0:0:67,0:2340,0:-210.841,-20.169,0,-210.841,-20.169,-210.841	1/2:137:0,66,71:0:0:66,71:2342,2531:-397.48,-206.668,-186.8,-191.167,0,-169.794	1/2:251:0,129,122:0:0:129,122:4501,4286:-715.258,-349.193,-310.36,-366.415,0,-329.689	1/2:53:0,21,32:0:0:21,32:720,1136:-151.363,-92.9159,-86.5943,-58.795,0,-49.162	1/1:76:0,76,0:0:0:76,0:2656,0:-239.281,-22.8783,0,-239.281,-22.8783,-239.281	1/1:74:0,74,0:0:0:74,0:2617,0:-235.774,-22.2762,0,-235.774,-22.2762,-235.774
chr09	19110228	.	ATG	ATT,GTT	135260	PASS	AB=0.51516,0.482216;ABP=9.85772,12.4331;AC=137,51;AF=0.728723,0.271277;AN=188;AO=4711,1665;CIGAR=2M1X,1X1M1X;DP=6387;DPB=6387;DPRA=0,1.03873;EPP=10163.4,3618.51;EPPR=0;GTI=0;LEN=1,3;MEANALT=1.7234,2.13793;MQM=59.6481,59.9189;MQMR=0;NS=94;NUMALT=2;ODDS=2.01435;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=168632,57442;QR=0;RO=0;RPL=4703,1665;RPP=10163.4,3618.51;RPPR=0;RPR=8,0;RUN=1,1;SAF=0,0;SAP=10232.8,3618.51;SAR=4711,1665;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32,0:0:0:32,0:1152,0:-103.982,-9.63296,0,-103.982,-9.63296,-103.982	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/1:128:0,128,0:0:0:128,0:4547,0:-408.979,-38.5318,0,-408.979,-38.5318,-408.979	1/1:90:0,90,0:0:0:90,0:3224,0:-290.366,-27.0927,0,-290.366,-27.0927,-290.366	1/2:25:0,19,6:0:0:19,6:681,196:-71.7178,-16.1543,-10.4348,-55.8976,0,-54.0915	1/2:20:0,9,11:0:0:9,11:320,389:-58.1057,-32.0367,-29.3274,-26.4235,0,-23.1122	1/2:25:0,11,14:0:0:11,14:392,486:-71.8063,-39.8544,-36.5431,-32.304,0,-28.0896	1/2:88:0,32,56:0:0:32,56:1152,1924:-250.572,-156.577,-146.944,-94.349,0,-77.4913	1/2:29:0,13,16:0:0:13,16:468,534:-81.7339,-43.5521,-39.6387,-38.5298,0,-33.7134	1/1:61:0,61,0:0:0:61,0:2196,0:-197.896,-18.3628,0,-197.896,-18.3628,-197.896	1/2:109:0,62,47:0:0:62,47:2224,1643:-315.408,-134.007,-115.344,-181.754,0,-167.606	1/1:90:0,90,0:0:0:90,0:3221,0:-290.04,-27.0927,0,-290.04,-27.0927,-290.04	1/1:97:0,96,1:0:0:96,1:3438,28:-309.283,-28.8989,0,-307.065,-26.4002,-306.764	1/2:112:0,47,64:0:0:47,64:1680,2253:-320.378,-183.408,-169.26,-136.966,0,-117.7	1/2:56:0,33,23:0:0:33,23:1188,792:-161.609,-64.6722,-54.7382,-97.2876,0,-90.3639	1/2:130:0,69,61:0:0:69,61:2471,2061:-368.91,-167.394,-146.623,-201.863,0,-183.5	1/2:43:0,20,23:0:0:20,23:720,799:-124.036,-65.3039,-59.2833,-59.0862,0,-52.1625	1/2:36:0,16,20:0:0:16,20:572,704:-104.284,-57.6586,-52.8421,-46.9805,0,-40.9599	1/1:61:0,61,0:0:0:61,0:2183,0:-196.71,-18.3628,0,-196.71,-18.3628,-196.71	1/2:146:0,66,79:0:0:66,79:2364,2750:-416.55,-223.76,-203.892,-192.94,0,-169.159	1/1:73:0,73,0:0:0:73,0:2601,0:-234.248,-21.9752,0,-234.248,-21.9752,-234.248	1/2:39:0,15,23:0:0:15,23:540,805:-109.621,-65.5543,-61.0389,-44.1361,0,-37.2124	1/1:19:0,19,0:0:0:19,0:676,0:-61.168,-5.71957,0,-61.168,-5.71957,-61.168	1/2:15:0,8,7:0:0:8,7:288,234:-42.7927,-19.2797,-16.8714,-23.8592,0,-21.752	1/1:19:0,19,0:0:0:19,0:674,0:-60.986,-5.71957,0,-60.986,-5.71957,-60.986	1/2:137:0,75,62:0:0:75,62:2679,2170:-395.322,-176.902,-154.325,-218.773,0,-200.109	1/2:216:0,145,71:0:0:145,71:5166,2422:-617.918,-196.862,-153.213,-421.402,0,-400.029	1/2:18:0,10,8:0:0:10,8:360,270:-51.6065,-22.2199,-19.2096,-29.734,0,-27.3258	1/2:163:0,92,71:0:0:92,71:3299,2423:-466.005,-196.953,-169.258,-269.401,0,-248.028	1/1:81:0,81,0:0:0:81,0:2908,0:-261.85,-24.3834,0,-261.85,-24.3834,-261.85	1/2:27:0,13,14:0:0:13,14:468,463:-75.9702,-37.772,-33.8586,-38.5439,0,-34.3295	1/1:11:0,11,0:0:0:11,0:396,0:-35.9735,-3.31133,0,-35.9735,-3.31133,-35.9735	1/2:20:0,12,8:0:0:12,8:432,278:-58.1958,-22.9486,-19.3362,-35.5996,0,-33.1913	1/2:8:0,1,7:0:0:1,7:36,243:-23.0393,-20.1003,-19.7992,-3.29724,0,-1.19003	1/1:12:0,12,0:0:0:12,0:424,0:-38.4882,-3.61236,0,-38.4882,-3.61236,-38.4882	1/2:30:0,15,15:0:0:15,15:536,503:-84.7862,-41.073,-36.5575,-44.0594,0,-39.5439	1/2:144:0,75,69:0:0:75,69:2668,2429:-415.518,-198.094,-175.517,-217.777,0,-197.006	1/1:62:0,62,0:0:0:62,0:2228,0:-200.752,-18.6639,0,-200.752,-18.6639,-200.752	1/2:74:0,38,35:0:0:38,35:1364,1223:-210.825,-99.5678,-88.1287,-111.343,0,-100.807	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:65:0,65,0:0:0:65,0:2319,0:-208.952,-19.567,0,-208.952,-19.567,-208.952	1/1:66:0,66,0:0:0:66,0:2342,0:-211.022,-19.868,0,-211.022,-19.868,-211.022	1/2:132:0,69,60:0:0:69,60:2472,2071:-369.894,-168.339,-147.568,-201.648,0,-183.587	1/2:28:0,18,10:0:0:18,10:644,354:-81.7039,-29.1897,-23.7712,-52.8693,0,-49.859	1/2:35:0,22,13:0:0:22,13:792,455:-101.998,-37.3688,-30.7461,-64.983,0,-61.0696	1/1:62:0,62,0:0:0:62,0:2213,0:-199.432,-18.6639,0,-199.432,-18.6639,-199.432	1/2:78:0,42,36:0:0:42,36:1506,1244:-224.164,-101.395,-88.752,-123.12,0,-112.283	1/1:103:0,103,0:0:0:103,0:3677,0:-331.124,-31.0061,0,-331.124,-31.0061,-331.124	1/1:60:0,60,0:0:0:60,0:2149,0:-193.661,-18.0618,0,-193.661,-18.0618,-193.661	1/2:96:0,33,62:0:0:33,62:1184,2137:-270.151,-173.573,-163.639,-96.5718,0,-77.9079	1/1:36:0,36,0:0:0:36,0:1292,0:-116.582,-10.8371,0,-116.582,-10.8371,-116.582	1/2:23:0,7,16:0:0:7,16:252,559:-66.3795,-45.8214,-43.7142,-20.9146,0,-16.0982	1/1:135:0,135,0:0:0:135,0:4815,0:-433.497,-40.6391,0,-433.497,-40.6391,-433.497	1/1:57:0,57,0:0:0:57,0:2044,0:-184.23,-17.1587,0,-184.23,-17.1587,-184.23	1/2:14:0,8,6:0:0:8,6:288,196:-39.6732,-16.1548,-13.7466,-23.8592,0,-22.053	1/1:109:0,109,0:0:0:109,0:3890,0:-350.221,-32.8123,0,-350.221,-32.8123,-350.221	1/1:2:0,2,0:0:0:2,0:72,0:-6.83577,-0.60206,0,-6.83577,-0.60206,-6.83577	1/2:15:0,10,5:0:0:10,5:360,178:-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chr09	19110238	.	G	A	98709.9	PASS	AB=0.519462;ABP=14.2515;AC=137;AF=0.728723;AN=188;AO=4726;CIGAR=1X;DP=6380;DPB=6380;DPRA=0;EPP=10265.4;EPPR=3588.11;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.6166;MQMR=59.9358;NS=94;NUMALT=1;ODDS=2.2997;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169440;QR=58985;RO=1651;RPL=4726;RPP=10265.4;RPPR=3588.11;RPR=0;RUN=1;SAF=0;SAP=10265.4;SAR=4726;SRF=0;SRP=3588.11;SRR=1651;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1188:-107.212,-9.93399,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:128:0,128:0:0:128:4592:-413.019,-38.5318,0	1/1:90:0,90:0:0:90:3236:-291.374,-27.0927,0	0/1:26:9,17:9:324:17:605:-46.9519,0,-21.6791	0/1:20:11,9:11:392:9:324:-23.4736,0,-29.5995	0/1:25:14,11:14:489:11:396:-28.4523,0,-36.8131	0/1:87:54,33:54:1944:33:1169:-79.3175,0,-149.046	0/1:27:16,11:16:576:11:396:-27.8385,0,-44.039	1/1:60:0,60:0:0:60:2156:-194.298,-18.0618,0	0/1:108:47,61:47:1680:61:2196:-165.389,0,-118.976	1/1:89:0,89:0:0:89:3187:-286.987,-26.7917,0	1/1:94:1,93:1:36:93:3344:-297.464,-24.6985,0	0/1:111:63,48:63:2256:48:1716:-121.293,0,-169.889	0/1:54:21,33:21:756:33:1175:-89.7963,0,-52.1116	0/1:128:59,69:59:2124:69:2480:-184.908,0,-152.896	0/1:44:23,21:23:824:21:754:-54.9226,0,-61.238	0/1:36:19,17:19:672:17:612:-44.5518,0,-49.9698	1/1:61:0,61:0:0:61:2191:-197.429,-18.3628,0	0/1:147:80,67:80:2864:67:2404:-172.356,0,-213.746	1/1:74:0,74:0:0:74:2646:-238.3,-22.2762,0	0/1:38:23,15:23:828:15:536:-37.1357,0,-63.36	1/1:21:0,21:0:0:21:736:-66.5591,-6.32163,0	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	1/1:20:0,20:0:0:20:720:-65.1242,-6.0206,0	0/1:135:59,76:59:2116:76:2703:-202.871,0,-150.07	0/1:219:72,147:72:2560:147:5265:-407.9,0,-164.723	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:166:71,95:71:2540:95:3386:-254.948,0,-178.88	1/1:81:0,81:0:0:81:2916:-262.651,-24.3834,0	0/1:26:13,13:13:464:13:468:-34.6329,0,-34.2707	1/1:11:0,11:0:0:11:396:-35.9735,-3.31133,0	0/1:20:8,12:8:280:12:432:-33.1913,0,-19.5187	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	1/1:12:0,12:0:0:12:432:-39.213,-3.61236,0	0/1:29:15,14:15:528:14:500:-36.6063,0,-39.1191	0/1:141:67,74:67:2390:74:2660:-197.168,0,-172.911	1/1:62:0,62:0:0:62:2228:-200.747,-18.6639,0	0/1:73:34,39:34:1211:39:1370:-101.596,0,-87.3203	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:65:0,65:0:0:65:2326:-209.583,-19.567,0	1/1:66:0,65:0:0:65:2337:-210.209,-19.567,0	0/1:130:60,69:60:2133:69:2463:-182.514,0,-153.044	0/1:28:10,18:10:360:18:648:-50.2203,0,-24.3155	0/1:35:13,22:13:447:22:792:-61.0696,0,-30.0216	1/1:63:0,63:0:0:63:2260:-203.661,-18.9649,0	0/1:79:36,43:36:1288:43:1540:-115.065,0,-92.2487	1/1:102:0,102:0:0:102:3672:-330.63,-30.7051,0	1/1:61:0,61:0:0:61:2176:-196.089,-18.3628,0	0/1:96:62,34:62:2216:34:1224:-81.5654,0,-170.792	1/1:36:0,36:0:0:36:1292:-116.582,-10.8371,0	0/1:23:16,7:16:572:7:252:-16.0982,0,-44.8897	1/1:139:0,139:0:0:139:4996:-449.762,-41.8432,0	1/1:57:0,57:0:0:57:2044:-184.23,-17.1587,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:109:0,109:0:0:109:3875:-348.799,-32.8123,0	1/1:2:0,2:0:0:2:72:-6.83577,-0.60206,0	0/1:15:5,10:5:176:10:360:-28.2289,0,-11.6696	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:34:17,17:17:612:17:612:-45.1738,0,-45.1738	0/1:142:67,75:67:2404:75:2687:-199.283,0,-173.87	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:107:54,53:54:1936:53:1877:-136.969,0,-142.306	1/1:69:1,68:1:36:68:2444:-216.567,-17.1728,0	0/1:45:20,25:20:720:25:896:-67.4002,0,-51.5824	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:95:45,50:45:1608:50:1781:-131.892,0,-116.412	1/1:108:0,108:0:0:108:3880:-349.384,-32.5112,0	1/1:96:1,95:1:36:95:3416:-303.982,-25.3006,0	1/1:54:0,54:0:0:54:1932:-174.131,-16.2556,0	0/1:58:20,38:20:720:38:1368:-105.958,0,-47.669	0/1:25:8,17:8:284:17:612:-47.883,0,-18.3776	1/1:91:0,91:0:0:91:3264:-293.641,-27.3937,0	0/1:40:23,17:23:820:17:612:-43.3722,0,-62.0813	1/1:47:2,45:2:72:45:1620:-139.249,-7.31169,0	1/1:142:0,142:0:0:142:5104:-459.464,-42.7463,0	0/1:75:29,46:29:1032:46:1637:-125.023,0,-70.4246	1/1:104:0,104:0:0:104:3732:-335.94,-31.3071,0	0/1:37:22,15:22:788:15:540:-37.7902,0,-60.1067	1/1:70:4,66:4:144:66:2357:-199.048,-7.75848,0	0/1:66:34,32:34:1220:32:1152:-84.0961,0,-90.2388	1/1:101:1,100:1:36:100:3596:-320.233,-26.8058,0	1/1:47:0,47:0:0:47:1679:-151.394,-14.1484,0	1/1:93:0,93:0:0:93:3348:-301.528,-27.9958,0	0/1:23:9,14:9:320:14:504:-38.772,0,-22.2187	1/1:87:1,86:1:36:86:3092:-274.881,-22.5913,0	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:65:34,30:34:1203:30:1080:-77.8518,0,-88.9495	1/1:68:0,68:0:0:68:2439:-219.74,-20.47,0	0/1:139:72,67:72:2580:67:2408:-175.128,0,-190.606	0/1:257:127,130:127:4500:130:4668:-342.678,0,-327.802	0/1:53:32,21:32:1148:21:743:-51.2378,0,-87.6752	1/1:73:0,73:0:0:73:2620:-236.043,-21.9752,0	1/1:73:0,73:0:0:73:2616:-235.681,-21.9752,0
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chr09	19180366	.	T	A	104541	PASS	AB=0.471712;ABP=30.6519;AC=131;AF=0.711957;AN=184;AO=5199;CIGAR=1X;DP=7322;DPB=7322;DPRA=41.1011;EPP=11179.9;EPPR=4576.2;GTI=1;LEN=1;MEANALT=1.01124;MQM=44.4391;MQMR=59.7516;NS=92;NUMALT=1;ODDS=3.93027;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186054;QR=75930;RO=2122;RPL=13;RPP=11179.9;RPPR=4576.2;RPR=5186;RUN=1;SAF=5199;SAP=11292.5;SAR=0;SRF=2122;SRP=4610.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:720:-64.676,-6.0206,0	1/1:129:0,129:0:0:129:4589:-403.331,-38.8329,0	1/1:59:0,59:0:0:59:2102:-186.502,-17.7608,0	1/1:108:0,108:0:0:108:3868:-341.024,-32.5112,0	0/1:28:23,5:23:820:5:180:-7.6891,0,-65.6232	0/1:30:24,6:24:860:6:216:-10.3374,0,-68.6891	0/1:61:37,24:37:1301:24:864:-58.398,0,-99.0232	0/1:134:59,75:59:2116:75:2692:-197.211,0,-150.369	0/1:86:44,41:44:1572:41:1468:-101.947,0,-115.84	1/1:167:3,164:3:104:164:5873:-506.373,-40.6162,0	0/1:22:16,6:16:572:6:216:-12.7856,0,-45.1884	1/1:59:0,59:0:0:59:2124:-187.397,-17.7608,0	1/1:70:0,70:0:0:70:2516:-222.208,-21.0721,0	0/1:42:16,26:16:568:26:936:-70.5561,0,-38.8071	0/1:78:44,34:44:1584:34:1207:-81.5158,0,-119.364	0/1:59:27,32:27:972:32:1128:-82.1044,0,-70.0356	0/1:76:41,35:41:1472:35:1252:-87.9179,0,-109.896	0/1:68:27,41:27:972:41:1472:-109.658,0,-67.3279	1/1:34:0,34:0:0:34:1224:-107.637,-10.235,0	0/1:158:99,59:99:3537:59:2101:-138.029,0,-270.941	1/1:128:0,128:0:0:128:4562:-402.867,-38.5318,0	0/1:66:52,14:52:1868:14:492:-23.9578,0,-148.522	1/1:33:0,33:0:0:33:1188:-104.42,-9.93399,0	0/1:103:54,49:54:1936:49:1760:-124.231,0,-143.507	1/1:29:0,29:0:0:29:1025:-91.1676,-8.72987,0	0/1:250:148,102:148:5304:102:3623:-244.476,0,-402.234	0/1:200:90,110:90:3223:110:3926:-287.773,0,-230.067	0/1:43:18,25:18:648:25:896:-66.0268,0,-45.706	0/1:147:80,67:80:2872:67:2408:-169.208,0,-214.461	1/1:82:0,82:0:0:82:2927:-256.348,-24.6845,0	0/1:136:59,77:59:2112:77:2746:-198.584,0,-149.381	1/1:5:0,5:0:0:5:180:-14.5505,-1.50515,0	0/1:10:4,6:4:140:6:216:-16.5953,0,-9.93428	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:8:0,8:0:0:8:288:-25.8929,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.68992,-0.60206,0	0/1:213:115,98:115:4115:98:3524:-247.45,0,-306.408	1/1:114:0,114:0:0:114:4088:-357.818,-34.3174,0	0/1:49:21,28:21:741:28:1008:-74.9247,0,-52.2611	1/1:4:0,4:0:0:4:140:-12.7001,-1.20412,0	1/1:61:2,59:2:68:59:2104:-180.102,-11.9051,0	1/1:26:0,26:0:0:26:936:-82.4411,-7.82678,0	0/1:75:34,41:34:1220:41:1472:-106.808,0,-87.5234	0/1:87:56,31:56:2004:31:1112:-71.1915,0,-154.333	0/1:88:46,42:46:1636:42:1508:-106.062,0,-121.029	1/1:62:0,62:0:0:62:2224:-195.282,-18.6639,0	0/1:99:66,33:66:2356:33:1184:-74.9082,0,-182.459	1/1:122:0,122:0:0:122:4363:-382.032,-36.7257,0	1/1:91:0,91:0:0:91:3264:-287.405,-27.3937,0	0/1:167:89,78:89:3179:78:2804:-194.237,0,-236.062	1/1:103:0,103:0:0:103:3666:-324.237,-31.0061,0	.:.:.:.:.:.:.:.	1/1:45:0,45:0:0:45:1620:-140.422,-13.5464,0	1/1:17:0,17:0:0:17:612:-54.1056,-5.11751,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:102:0,102:0:0:102:3624:-319.949,-30.7051,0	0/1:29:22,7:22:788:7:252:-13.9078,0,-62.4988	.:.:.:.:.:.:.:.	0/1:10:6,4:6:216:4:144:-10.0734,0,-16.7802	0/1:54:22,32:22:784:32:1152:-86.2763,0,-54.6267	0/1:90:47,43:47:1684:43:1544:-108.541,0,-124.749	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:238:124,114:124:4433:114:4073:-287.043,0,-327.443	1/1:235:5,230:5:180:230:8233:-705.758,-54.1947,0	0/1:52:27,25:27:968:25:892:-63.6609,0,-71.7807	1/1:53:0,53:0:0:53:1889:-166.345,-15.9546,0	0/1:143:73,70:73:2612:70:2504:-177.052,0,-192.104	0/1:72:8,64:8:288:64:2300:-179.666,0,-4.59325	1/1:13:0,13:0:0:13:468:-41.4623,-3.91339,0	1/1:47:0,47:0:0:47:1677:-148.872,-14.1484,0	0/1:80:39,41:39:1404:41:1476:-105.896,0,-102.575	0/1:16:9,7:9:316:7:252:-17.6008,0,-23.9624	1/1:39:0,39:0:0:39:1392:-122.38,-11.7402,0	0/1:74:34,40:34:1220:40:1440:-104.836,0,-87.8242	1/1:108:0,108:0:0:108:3872:-344.481,-32.5112,0	1/1:146:0,146:0:0:146:5219:-458.302,-43.9504,0	0/1:41:31,10:31:1100:10:356:-19.7754,0,-86.9681	1/1:120:5,115:5:161:115:4127:-349.102,-21.317,0	0/1:16:8,8:8:288:8:288:-20.9629,0,-21.4509	1/1:88:0,88:0:0:88:3160:-277.511,-26.4906,0	0/1:100:48,52:48:1724:52:1857:-134.575,0,-125.339	1/1:216:0,216:0:0:216:7667:-672.804,-65.0225,0	1/1:100:0,100:0:0:100:3600:-315.409,-30.103,0	1/1:44:0,44:0:0:44:1580:-139.568,-13.2453,0	0/1:112:61,51:61:2192:51:1832:-127.124,0,-162.639	1/1:160:0,160:0:0:160:5724:-505.661,-48.1648,0	0/1:48:28,20:28:1004:20:720:-49.2972,0,-76.198	0/1:82:36,46:36:1292:46:1639:-117.002,0,-91.8993	1/1:58:0,58:0:0:58:2084:-184.144,-17.4597,0	0/1:18:9,9:9:324:9:324:-23.3322,0,-24.0873	0/1:45:19,26:19:680:26:932:-68.6027,0,-47.9824	0/1:82:60,22:60:2148:22:792:-45.0923,0,-168.893	1/1:134:1,133:1:36:133:4767:-415.319,-36.7397,0	1/1:98:0,98:0:0:98:3516:-309.652,-29.5009,0
chr09	19180371	.	C	T	104449	PASS	AB=0.469708;ABP=34.4518;AC=131;AF=0.711957;AN=184;AO=5137;CIGAR=1X;DP=7257;DPB=7257;DPRA=40.736;EPP=10744.8;EPPR=4425.93;GTI=1;LEN=1;MEANALT=1;MQM=44.4024;MQMR=59.7368;NS=92;NUMALT=1;ODDS=3.87557;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183645;QR=75321;RO=2120;RPL=48;RPP=10744.8;RPPR=4425.93;RPR=5089;RUN=1;SAF=5137;SAP=11157.9;SAR=0;SRF=2120;SRP=4606.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:716:-64.3198,-6.0206,0	1/1:128:0,128:0:0:128:4555:-400.496,-38.5318,0	1/1:60:0,60:0:0:60:2148:-189.982,-18.0618,0	1/1:106:0,106:0:0:106:3787:-333.784,-31.9092,0	0/1:28:23,5:23:811:5:180:-7.6891,0,-64.8502	0/1:31:25,6:25:880:6:216:-10.0364,0,-70.184	0/1:59:36,23:36:1275:23:815:-54.6752,0,-97.2882	0/1:134:59,75:59:2107:75:2673:-195.713,0,-149.559	0/1:86:46,40:46:1631:40:1422:-98.0545,0,-120.995	1/1:168:3,165:3:108:165:5873:-506.021,-40.5451,0	0/1:22:16,6:16:543:6:216:-12.7856,0,-42.5659	1/1:60:0,60:0:0:60:2152:-189.981,-18.0618,0	1/1:68:0,68:0:0:68:2444:-215.88,-20.47,0	0/1:42:16,26:16:576:26:927:-69.8043,0,-39.5302	0/1:75:41,34:41:1468:34:1215:-82.9692,0,-109.834	0/1:60:27,33:27:968:33:1176:-86.0696,0,-69.374	0/1:76:42,34:42:1462:34:1224:-85.4133,0,-108.99	0/1:69:28,41:28:996:41:1463:-108.601,0,-69.1838	1/1:34:0,34:0:0:34:1215:-106.886,-10.235,0	0/1:159:99,60:99:3515:60:2148:-141.574,0,-268.664	1/1:122:0,122:0:0:122:4343:-383.48,-36.7257,0	0/1:64:50,14:50:1784:14:488:-24.2309,0,-141.573	1/1:31:0,31:0:0:31:1103:-97.2175,-9.33193,0	0/1:102:55,47:55:1947:47:1675:-117.062,0,-144.797	1/1:26:0,26:0:0:26:919:-81.8564,-7.82678,0	0/1:241:145,96:145:5175:96:3440:-231.093,0,-393.341	0/1:201:92,109:92:3253:109:3908:-285.948,0,-232.468	0/1:46:20,26:20:711:26:928:-67.9726,0,-50.4667	0/1:145:79,66:79:2828:66:2351:-164.88,0,-211.106	1/1:83:0,83:0:0:83:2963:-259.151,-24.9855,0	0/1:132:57,75:57:2013:75:2670:-193.16,0,-141.682	1/1:5:0,5:0:0:5:180:-14.5505,-1.50515,0	0/1:11:5,6:5:180:6:216:-16.2943,0,-13.2407	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:8:0,8:0:0:8:288:-25.8929,-2.40824,0	1/1:2:0,2:0:0:2:68:-6.35344,-0.60206,0	0/1:211:115,96:115:4111:96:3431:-239.945,0,-306.651	1/1:112:0,112:0:0:112:3994:-349.772,-33.7154,0	0/1:50:22,28:22:775:28:1008:-74.6237,0,-55.0193	1/1:4:0,4:0:0:4:144:-13.0277,-1.20412,0	1/1:61:2,59:2:72:59:2112:-180.455,-11.5261,0	1/1:26:0,26:0:0:26:936:-82.4411,-7.82678,0	0/1:71:30,41:30:1060:41:1472:-108.012,0,-74.3363	0/1:87:56,31:56:1967:31:1116:-71.3721,0,-151.109	0/1:87:45,42:45:1595:42:1508:-106.363,0,-117.641	1/1:59:0,59:0:0:59:2111:-185.414,-17.7608,0	0/1:102:69,33:69:2450:33:1176:-72.7504,0,-190.012	1/1:124:0,124:0:0:124:4421:-386.958,-37.3277,0	1/1:92:0,92:0:0:92:3308:-291.201,-27.6948,0	0/1:166:89,77:89:3167:77:2764:-191.032,0,-235.282	1/1:101:0,101:0:0:101:3612:-319.696,-30.404,0	.:.:.:.:.:.:.:.	1/1:45:0,45:0:0:45:1612:-139.747,-13.5464,0	1/1:17:0,17:0:0:17:612:-54.1056,-5.11751,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:104:0,104:0:0:104:3705:-326.269,-31.3071,0	0/1:29:21,8:21:740:8:288:-17.0765,0,-58.1856	.:.:.:.:.:.:.:.	0/1:9:5,4:5:180:4:144:-10.3744,0,-13.8428	0/1:53:22,31:22:771:31:1112:-83.0545,0,-53.7555	0/1:88:46,42:46:1634:42:1512:-106.301,0,-120.852	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:236:124,112:124:4410:112:3982:-279.652,0,-325.895	1/1:227:6,221:6:212:221:7881:-671.874,-48.9146,0	0/1:51:26,25:26:924:25:896:-64.2821,0,-68.122	1/1:53:0,53:0:0:53:1888:-166.415,-15.9546,0	0/1:141:73,68:73:2603:68:2431:-171.014,0,-191.895	0/1:72:8,64:8:288:64:2276:-178.045,0,-4.59325	1/1:13:0,13:0:0:13:464:-41.1408,-3.91339,0	1/1:46:0,46:0:0:46:1648:-146.278,-13.8474,0	0/1:79:38,41:38:1364:41:1476:-106.197,0,-99.2775	0/1:16:9,7:9:324:7:252:-17.6008,0,-24.6894	1/1:39:0,39:0:0:39:1385:-121.767,-11.7402,0	0/1:74:34,40:34:1190:40:1428:-103.87,0,-85.1209	1/1:108:3,105:3:99:105:3776:-326.6,-23.2981,0	1/1:144:2,142:2:72:142:5078:-438.588,-36.5165,0	0/1:39:29,10:29:1036:10:360:-20.7356,0,-81.8137	1/1:119:5,114:5:176:114:4083:-343.94,-19.6376,0	0/1:16:8,8:8:284:8:288:-20.9629,0,-21.0869	1/1:84:0,84:0:0:84:3024:-265.069,-25.2865,0	0/1:101:52,49:52:1848:49:1749:-124.5,0,-136.19	1/1:212:0,212:0:0:212:7576:-664.579,-63.8184,0	1/1:101:0,101:0:0:101:3632:-317.667,-30.404,0	1/1:43:0,43:0:0:43:1548:-136.653,-12.9443,0	0/1:110:60,50:60:2140:50:1792:-124.203,0,-158.896	1/1:160:0,160:0:0:160:5718:-504.259,-48.1648,0	0/1:48:28,20:28:995:20:711:-48.5445,0,-75.4146	0/1:83:37,46:37:1324:46:1617:-115.253,0,-94.4766	1/1:59:0,59:0:0:59:2116:-186.994,-17.7608,0	0/1:18:9,9:9:320:9:324:-23.3322,0,-23.7238	0/1:45:18,27:18:640:27:959:-70.8621,0,-44.3826	0/1:80:58,22:58:2067:22:784:-45.0827,0,-162.215	1/1:135:1,134:1:36:134:4812:-419.273,-37.0408,0	1/1:97:0,97:0:0:97:3488:-307.073,-29.1999,0
chr09	19180392	.	A	C	102492	PASS	AB=0.469743;ABP=34.5476;AC=131;AF=0.711957;AN=184;AO=5188;CIGAR=1X;DP=7316;DPB=7316;DPRA=41.0674;EPP=11259.9;EPPR=4582.71;GTI=1;LEN=1;MEANALT=1.03371;MQM=44.4217;MQMR=59.7501;NS=92;NUMALT=1;ODDS=4.09197;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184584;QR=75757;RO=2125;RPL=5187;RPP=11259.9;RPPR=4565.42;RPR=1;RUN=1;SAF=5188;SAP=11268.6;SAR=0;SRF=2123;SRP=4600.03;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:679:-61.0983,-6.0206,0	1/1:129:0,129:0:0:129:4588:-403,-38.8329,0	1/1:62:0,62:0:0:62:2189:-193.633,-18.6639,0	1/1:107:0,107:0:0:107:3831:-337.647,-32.2102,0	0/1:27:22,5:22:788:5:180:-7.99013,0,-63.1154	0/1:30:24,6:24:836:6:216:-10.3374,0,-66.522	0/1:60:36,24:36:1288:24:856:-58.0676,0,-98.1571	0/1:135:58,77:58:2065:77:2713:-199.089,0,-145.479	0/1:85:45,40:45:1600:40:1410:-97.857,0,-118.508	1/1:170:3,167:3:108:167:5985:-516.236,-41.1472,0	0/1:24:17,7:17:596:7:252:-15.3356,0,-46.7407	1/1:60:0,60:0:0:60:2144:-189.307,-18.0618,0	1/1:70:0,70:0:0:70:2503:-221.17,-21.0721,0	0/1:41:16,25:16:572:25:883:-66.245,0,-39.4696	0/1:77:43,34:43:1536:34:1214:-82.1646,0,-115.348	0/1:60:28,32:28:1000:32:1144:-83.1911,0,-72.252	0/1:76:41,35:41:1468:35:1252:-87.9535,0,-109.536	0/1:70:29,41:29:1032:41:1459:-108.132,0,-72.1214	1/1:34:0,34:0:0:34:1224:-107.637,-10.235,0	0/1:156:98,58:98:3468:58:2048:-133.69,0,-265.34	1/1:127:0,127:0:0:127:4513:-398.677,-38.2308,0	0/1:63:50,13:50:1768:13:459:-21.8059,0,-140.433	1/1:32:0,32:0:0:32:1136:-99.883,-9.63296,0	0/1:103:53,50:53:1871:50:1782:-126.403,0,-137.661	1/1:26:0,26:0:0:26:919:-81.8893,-7.82678,0	0/1:245:144,101:144:5116:101:3579:-242.013,0,-386.831	0/1:201:90,111:90:3220:111:3950:-289.676,0,-229.497	0/1:46:20,26:20:716:26:936:-68.3967,0,-50.9188	0/1:143:78,65:78:2796:65:2297:-161.265,0,-208.83	1/1:81:0,81:0:0:81:2873:-251.718,-24.3834,0	0/1:132:59,73:59:2116:73:2600:-187.721,0,-150.944	1/1:5:0,5:0:0:5:180:-14.5505,-1.50515,0	0/1:10:4,6:4:144:6:216:-16.5953,0,-10.3033	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:8:0,8:0:0:8:284:-25.5697,-2.40824,0	1/1:2:0,2:0:0:2:63:-5.89974,-0.60206,0	0/1:218:119,99:119:4260:99:3512:-245.184,0,-317.947	1/1:116:0,116:0:0:116:4119:-360.663,-34.9195,0	0/1:50:22,28:22:792:28:995:-73.572,0,-56.5533	1/1:4:0,4:0:0:4:135:-12.2584,-1.20412,0	1/1:62:2,60:2:68:60:2152:-184.262,-12.2062,0	1/1:26:0,26:0:0:26:932:-82.121,-7.82678,0	0/1:74:34,40:34:1212:40:1419:-102.5,0,-87.104	0/1:89:58,31:58:2072:31:1095:-69.1238,0,-159.84	0/1:87:46,41:46:1627:41:1456:-101.855,0,-120.52	1/1:61:0,61:0:0:61:2153:-189.176,-18.3628,0	0/1:103:68,34:68:2428:34:1201:-75.2068,0,-187.665	1/1:119:0,119:0:0:119:4264:-374.322,-35.8226,0	1/1:94:0,94:0:0:94:3311:-291.911,-28.2968,0	0/1:165:87,78:87:3103:78:2762:-191.902,0,-229.825	1/1:102:0,102:0:0:102:3588:-317.624,-30.7051,0	.:.:.:.:.:.:.:.	1/1:44:0,44:0:0:44:1569:-136.608,-13.2453,0	1/1:17:0,17:0:0:17:612:-54.1056,-5.11751,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:104:0,104:0:0:104:3706:-326.925,-31.3071,0	0/1:29:21,8:21:731:8:288:-17.0765,0,-57.3782	.:.:.:.:.:.:.:.	0/1:10:6,4:6:212:4:144:-10.0734,0,-16.4145	0/1:55:22,33:22:788:33:1184:-88.8834,0,-54.6866	0/1:90:46,44:46:1644:44:1584:-111.961,0,-121.151	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:235:126,109:126:4512:109:3912:-274.031,0,-335.369	1/1:236:5,231:5:180:231:8244:-706.5,-54.4957,0	0/1:52:27,25:27:972:25:900:-64.3012,0,-72.1413	1/1:54:0,54:0:0:54:1928:-169.974,-16.2556,0	0/1:143:75,68:75:2684:68:2400:-168.002,0,-198.578	0/1:72:8,64:8:279:64:2283:-179.422,0,-3.77337	1/1:13:0,13:0:0:13:468:-41.4623,-3.91339,0	1/1:46:0,46:0:0:46:1644:-146.011,-13.8474,0	0/1:80:39,41:39:1400:41:1468:-105.241,0,-102.215	0/1:16:9,7:9:324:7:252:-17.6008,0,-24.6894	1/1:38:0,38:0:0:38:1354:-119.486,-11.4391,0	0/1:72:33,39:33:1184:39:1388:-101.287,0,-85.1923	1/1:110:0,110:0:0:110:3887:-345.93,-33.1133,0	1/1:144:0,144:0:0:144:5125:-450.012,-43.3483,0	0/1:41:31,10:31:1112:10:356:-19.7754,0,-88.0491	1/1:119:5,113:5:171:113:4029:-339.609,-20.1465,0	0/1:16:8,8:8:288:8:288:-20.9629,0,-21.4509	1/1:89:0,89:0:0:89:3187:-279.653,-26.7917,0	0/1:99:48,51:48:1697:51:1815:-131.242,0,-123.209	1/1:213:1,212:1:32:212:7528:-656.541,-60.9262,0	1/1:103:1,102:1:36:102:3588:-311.605,-27.4078,0	1/1:44:0,44:0:0:44:1552:-137.204,-13.2453,0	0/1:111:63,48:63:2256:48:1705:-116.277,0,-168.697	1/1:162:0,162:0:0:162:5772:-509.247,-48.7669,0	0/1:48:28,20:28:996:20:716:-48.9767,0,-75.4939	0/1:82:36,46:36:1273:46:1628:-116.06,0,-90.1865	1/1:58:0,58:0:0:58:2074:-183.361,-17.4597,0	0/1:18:9,9:9:324:9:324:-23.3322,0,-24.0873	0/1:47:19,28:19:672:28:1003:-74.1807,0,-46.658	0/1:80:58,21:58:2072:21:748:-41.8556,0,-162.608	1/1:136:1,135:1:36:135:4816:-420.327,-37.3418,0	1/1:97:0,97:0:0:97:3464:-305.52,-29.1999,0
chr09	19180401	.	A	T,G	344710	PASS	AB=0.448923,0.550518;ABP=167.16,163.39;AC=132,55;AF=0.702128,0.292553;AN=188;AO=9060,4029;CIGAR=1X,1X;DP=13105;DPB=13105;DPRA=43.1703,1.20773;EPP=19676.6,8751.87;EPPR=10.7656;GTI=2;LEN=1,1;MEANALT=1.73626,2.01538;MQM=43.3114,58.065;MQMR=57.1429;NS=94;NUMALT=2;ODDS=1.4246;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=322300,140264;QR=243;RO=7;RPL=5081,2049;RPP=294.075,5.57629;RPPR=10.7656;RPR=3979,1980;RUN=1,1;SAF=5081,2049;SAP=294.075,5.57629;SAR=3979,1980;SRF=2;SRP=5.80219;SRR=5;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19,0:0:0:19,0:676,0:-60.7364,-5.71957,0,-60.7364,-5.71957,-60.7364	1/1:124:0,123,1:0:0:123,1:4367,36:-383.439,-37.0267,0,-380.503,-33.7305,-380.202	1/1:57:0,57,0:0:0:57,0:2019,0:-178.796,-17.1587,0,-178.796,-17.1587,-178.796	1/1:248:0,246,2:0:0:246,2:8732,68:-765.214,-74.0534,0,-759.702,-68.2012,-759.1	1/2:36:0,5,31:0:0:5,31:176,1108:-104.617,-90.6179,-89.1127,-14.3457,0,-5.01379	1/2:39:0,6,32:0:0:6,32:216,1083:-104.981,-87.7694,-85.9632,-17.2035,0,-7.57054	1/2:161:0,81,80:0:0:81,80:2859,2809:-454.583,-228.162,-203.778,-226.768,0,-202.686	1/2:174:0,76,98:0:0:76,98:2716,3453:-497.718,-281.288,-258.41,-216.781,0,-187.28	1/2:119:0,39,80:0:0:39,80:1344,2779:-330.87,-225.911,-214.171,-105.296,0,-81.2134	1/1:246:0,244,2:0:0:244,2:8662,72:-758.194,-73.4513,0,-752.364,-67.2644,-751.762	1/2:158:0,73,85:0:0:73,85:2604,2914:-442.083,-236.582,-214.607,-205.845,0,-180.257	1/1:58:1,57,0:1:36:57,0:2027,0:-175.376,-13.8615,0,-175.677,-17.1587,-178.615	1/1:70:0,70,0:0:0:70,0:2511,0:-221.914,-21.0721,0,-221.914,-21.0721,-221.914	1/2:151:0,63,88:0:0:63,88:2237,3007:-421.341,-244.053,-225.088,-177.632,0,-151.142	1/2:154:0,62,91:0:0:62,91:2199,3159:-428.55,-256.592,-237.928,-171.952,0,-144.558	1/2:141:0,72,69:0:0:72,69:2559,2400:-398.553,-195.294,-173.62,-203.606,0,-182.835	1/2:112:0,34,78:0:0:34,78:1192,2748:-319.016,-223.884,-213.649,-95.4795,0,-71.9992	1/2:83:0,40,43:0:0:40,43:1432,1463:-233.446,-119.003,-106.962,-114.789,0,-101.845	1/1:34:0,34,0:0:0:34,0:1216,0:-104.947,-10.235,0,-104.947,-10.235,-104.947	1/2:299:0,134,165:0:0:134,165:4791,5802:-851.28,-472.237,-431.899,-379.392,0,-329.722	1/1:176:0,176,0:0:0:176,0:6277,0:-552.061,-52.9813,0,-552.061,-52.9813,-552.061	1/2:115:0,23,92:0:0:23,92:798,3251:-328.638,-264.966,-258.042,-64.0151,0,-36.3204	1/1:133:0,132,1:0:0:132,1:4680,36:-405.181,-39.736,0,-402.329,-36.5343,-402.028	1/2:153:0,82,71:0:0:82,71:2925,2488:-435.789,-202.778,-178.093,-233.361,0,-211.988	1/1:60:0,60,0:0:0:60,0:2138,0:-187.583,-18.0618,0,-187.583,-18.0618,-187.583	1/2:378:0,161,217:0:0:161,217:5749,7689:-1083.42,-626.372,-577.906,-457.395,0,-392.071	1/2:354:1,199,154:1:36:199,154:7069,5373:-996.829,-433.842,-376.87,-560.344,0,-516.919	1/2:85:1,46,38:1:36:46,38:1640,1325:-234.024,-104.733,-93.8233,-126.643,0,-118.141	1/2:329:0,178,151:0:0:178,151:6353,5260:-931.176,-427.751,-374.168,-503.772,0,-458.317	1/1:165:0,165,0:0:0:165,0:5878,0:-514.296,-49.67,0,-514.296,-49.67,-514.296	1/2:219:0,117,102:0:0:117,102:4171,3536:-615.256,-286.779,-251.558,-328.823,0,-298.118	1/1:5:0,5,0:0:0:5,0:176,0:-14.4447,-1.50515,0,-14.4447,-1.50515,-14.4447	1/2:24:0,11,13:0:0:11,13:392,455:-68.6493,-37.2185,-33.9072,-31.7806,0,-27.8672	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	0/1:9:1,8,0:1:36:8,0:284,0:-22.8245,0,-0.889005,-23.1255,-3.29724,-26.0641	1/2:6:0,2,4:0:0:2,4:72,144:-17.8395,-12.1063,-11.5042,-6.08786,0,-4.88374	1/2:390:0,190,200:0:0:190,200:6782,6930:-1103.73,-563.457,-506.261,-540.622,0,-480.416	1/1:162:0,162,0:0:0:162,0:5794,0:-507.582,-48.7669,0,-507.582,-48.7669,-507.582	1/2:96:0,28,68:0:0:28,68:1004,2355:-272.08,-191.54,-183.111,-80.8907,0,-60.4207	1/1:7:0,7,0:0:0:7,0:252,0:-22.5345,-2.10721,0,-22.5345,-2.10721,-22.5345	1/1:152:0,149,3:0:0:149,3:5311,95:-467.268,-44.8535,0,-459.625,-36.8925,-458.722	1/1:89:0,89,0:0:0:89,0:3176,0:-277.355,-26.7917,0,-277.355,-26.7917,-277.355	1/2:148:0,77,68:0:0:77,68:2738,2383:-409.468,-193.771,-170.592,-215.686,0,-195.216	1/2:153:0,69,84:0:0:69,84:2463,2868:-427.02,-232.927,-212.156,-194.437,0,-169.15	1/2:134:0,58,76:0:0:58,76:2084,2648:-379.94,-214.829,-197.369,-165.46,0,-142.582	1/1:133:0,133,0:0:0:133,0:4712,0:-413.704,-40.037,0,-413.704,-40.037,-413.704	1/2:123:0,32,91:0:0:32,91:1135,3195:-350.719,-260.355,-250.722,-90.7123,0,-63.3186	1/1:205:0,204,1:0:0:204,1:7244,36:-632.647,-61.4101,0,-629.796,-58.2085,-629.495	1/1:176:0,176,0:0:0:176,0:6258,0:-547.762,-52.9813,0,-547.762,-52.9813,-547.762	1/2:295:0,155,140:0:0:155,140:5500,4902:-828.869,-398.945,-352.286,-430.269,0,-388.125	1/1:192:0,192,0:0:0:192,0:6804,0:-598.481,-57.7978,0,-598.481,-57.7978,-598.481	1/2:2:0,1,1:0:0:1,1:36,36:-6.1414,-3.29465,-2.99362,-3.20167,0,-2.90064	1/1:44:0,44,0:0:0:44,0:1580,0:-136.836,-13.2453,0,-136.836,-13.2453,-136.836	1/1:121:0,121,0:0:0:121,0:4306,0:-377.423,-36.4246,0,-377.423,-36.4246,-377.423	2/2:7:0,0,7:0:0:0,7:0,252:-23.0209,-23.0209,-23.0209,-2.10721,-2.10721,0	1/1:224:0,223,1:0:0:223,1:7931,21:-695.065,-67.1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chr09	19180802	.	C	A	101550	PASS	AB=0.488646;ABP=7.00442;AC=135;AF=0.718085;AN=188;AO=4891;CIGAR=1X;DP=6730;DPB=6730;DPRA=24.1111;EPP=10545.7;EPPR=3924.92;GTI=2;LEN=1;MEANALT=1.05376;MQM=56.1264;MQMR=56.1358;NS=94;NUMALT=1;ODDS=0.239721;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174373;QR=65155;RO=1834;RPL=10;RPP=10537;RPPR=3924.92;RPR=4881;RUN=1;SAF=1;SAP=10615;SAR=4890;SRF=0;SRP=3985.49;SRR=1834;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:784:-70.2336,-6.62266,0	1/1:96:0,96:0:0:96:3410:-306.259,-28.8989,0	1/1:99:0,99:0:0:99:3533:-317.681,-29.802,0	1/1:127:0,127:0:0:127:4541:-407.628,-38.2308,0	0/1:31:11,20:11:392:20:716:-55.3374,0,-26.272	0/1:52:29,23:29:1044:23:820:-58.4483,0,-78.5547	0/1:91:39,52:39:1382:52:1834:-137.667,0,-97.1169	0/1:87:45,42:45:1595:42:1490:-107.783,0,-117.406	0/1:49:22,27:22:783:27:959:-71.7054,0,-55.3675	1/1:63:0,63:0:0:63:2247:-202.016,-18.9649,0	0/1:85:38,47:38:1351:47:1669:-123.887,0,-96.0554	1/1:106:0,106:0:0:106:3783:-340.236,-31.9092,0	1/1:75:0,75:0:0:75:2684:-241.048,-22.5773,0	0/1:61:26,35:26:888:35:1245:-93.0995,0,-61.7489	0/1:74:36,38:36:1292:38:1364:-100.618,0,-94.1332	0/1:57:21,36:21:756:36:1277:-97.5897,0,-51.1077	0/1:70:27,43:27:959:43:1535:-117.258,0,-65.3321	0/1:39:19,20:19:665:20:720:-53.3014,0,-48.4167	1/1:55:0,55:0:0:55:1959:-176.391,-16.5567,0	0/1:171:95,76:95:3384:76:2716:-192.955,0,-251.679	1/1:105:0,105:0:0:105:3716:-333.112,-31.6082,0	0/1:98:64,34:64:2292:34:1224:-80.9295,0,-176.89	1/1:108:0,108:0:0:108:3837:-344.519,-32.5112,0	0/1:53:30,23:30:1076:23:828:-58.7863,0,-81.0859	1/1:48:0,48:0:0:48:1708:-153.94,-14.4494,0	0/1:128:73,55:73:2604:55:1952:-136.703,0,-195.927	0/1:175:83,92:83:2953:92:3292:-243.549,0,-212.893	0/1:34:20,14:20:716:14:504:-35.4414,0,-54.4967	0/1:160:89,71:89:3147:71:2528:-178.617,0,-234.68	1/1:129:0,129:0:0:129:4599:-412.828,-38.8329,0	0/1:90:54,36:54:1906:36:1284:-88.0005,0,-144.383	1/1:6:0,6:0:0:6:212:-19.4175,-1.80618,0	0/1:19:8,11:8:284:11:377:-28.4532,0,-19.9364	0/1:7:5,2:5:176:2:68:-4.26491,0,-14.0749	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/1:22:10,12:10:360:12:410:-30.59,0,-26.1027	0/1:207:110,97:110:3923:97:3476:-250.375,0,-290.573	1/1:58:0,58:0:0:58:2076:-186.817,-17.4597,0	0/1:85:41,43:41:1455:43:1536:-112.634,0,-104.94	1/1:5:0,5:0:0:5:180:-16.5442,-1.50515,0	1/1:67:1,66:1:36:66:2356:-208.173,-16.5724,0	1/1:50:0,49:0:0:49:1756:-157.814,-14.7505,0	0/1:70:37,33:37:1311:33:1172:-84.6035,0,-97.0596	0/1:90:45,45:45:1603:45:1599:-117.009,0,-117.353	0/1:45:20,25:20:716:25:882:-65.4701,0,-51.1682	1/1:63:0,63:0:0:63:2239:-201.574,-18.9649,0	0/1:93:36,57:36:1284:57:2036:-155.328,0,-87.7538	1/1:83:1,82:1:36:82:2914:-258.575,-21.3898,0	1/1:56:0,56:0:0:56:1991:-179.169,-16.8577,0	0/1:74:36,38:36:1275:38:1356:-99.7142,0,-92.2642	1/1:117:0,117:0:0:117:4160:-373.798,-35.2205,0	0/1:10:3,7:3:104:7:252:-20.0035,0,-6.59897	1/1:80:0,80:0:0:80:2863:-257.631,-24.0824,0	1/1:40:0,40:0:0:40:1432:-128.845,-12.0412,0	0/1:13:4,9:4:140:9:320:-25.2218,0,-9.02802	1/1:85:0,85:0:0:85:3037:-272.913,-25.5876,0	0/1:48:21,27:21:734:27:958:-71.878,0,-51.6999	0/1:3:1,2:1:36:2:72:-5.93172,0,-2.69418	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0709	0/1:69:36,33:36:1250:33:1182:-85.0416,0,-91.7096	0/1:101:43,58:43:1540:58:2057:-154.598,0,-107.373	0/1:5:1,4:1:36:4:144:-11.7129,0,-2.09053	0/1:108:61,47:61:2167:47:1663:-117.268,0,-162.273	1/1:105:0,105:0:0:105:3755:-336.701,-31.6082,0	0/1:45:19,26:19:664:26:936:-70.837,0,-46.4483	1/1:54:0,54:0:0:54:1928:-173.329,-16.2556,0	0/1:87:52,35:52:1847:35:1260:-87.2699,0,-139.984	1/1:99:0,98:0:0:98:3508:-315.193,-29.5009,0	1/1:71:0,71:0:0:71:2514:-226.048,-21.3731,0	1/1:42:0,42:0:0:42:1485:-133.828,-12.6433,0	0/1:54:36,18:36:1277:18:644:-41.9069,0,-98.6903	0/1:9:4,5:4:144:5:180:-13.8309,0,-10.5831	1/1:64:0,64:0:0:64:2268:-204.14,-19.2659,0	0/1:52:25,27:25:891:27:957:-70.6986,0,-64.6955	1/1:92:0,92:0:0:92:3295:-295.328,-27.6948,0	1/1:68:0,68:0:0:68:2436:-218.78,-20.47,0	0/1:68:29,39:29:1028:39:1400:-105.658,0,-72.2459	1/1:83:0,83:0:0:83:2963:-266.472,-24.9855,0	0/1:21:12,9:12:428:9:320:-22.813,0,-32.4126	1/1:69:0,68:0:0:68:2440:-219.296,-20.47,0	0/1:83:51,32:51:1823:32:1123:-75.6636,0,-139.249	1/1:148:2,146:2:72:146:5224:-461.824,-37.7206,0	1/1:89:0,88:0:0:88:3148:-282.786,-26.4906,0	1/1:61:0,61:0:0:61:2187:-196.874,-18.3628,0	0/1:78:40,38:40:1428:38:1326:-95.9089,0,-105.237	1/1:126:4,122:4:144:122:4340:-376.659,-24.6694,0	0/1:46:22,24:22:779:24:860:-63.7547,0,-56.5587	0/1:68:32,36:32:1119:36:1292:-95.8479,0,-79.6905	1/1:83:0,83:0:0:83:2954:-265.862,-24.9855,0	0/1:85:46,39:46:1638:39:1400:-100.584,0,-121.886	0/1:115:58,57:58:2072:57:2031:-147.987,0,-151.711	0/1:82:58,24:58:2042:24:838:-50.9713,0,-159.215	1/1:59:0,59:0:0:59:2108:-189.829,-17.7608,0	1/1:103:0,103:0:0:103:3683:-331.123,-31.0061,0
chr09	19180809	.	CGGA	CGGC,TGGC	146394	PASS	AB=0.487427,0.506494;ABP=7.97907,4.33574;AC=134,54;AF=0.712766,0.287234;AN=188;AO=4955,1852;CIGAR=3M1X,1X2M1X;DP=6849;DPB=6849;DPRA=16.5217,1.02257;EPP=10400.9,3929.6;EPPR=13.8677;GTI=2;LEN=1,4;MEANALT=1.93478,2.31034;MQM=56.2103,56.1285;MQMR=60;NS=94;NUMALT=2;ODDS=0.773267;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=177049,64744;QR=172;RO=5;RPL=4913,1841;RPP=10400.9,3929.6;RPPR=13.8677;RPR=42,11;RUN=1,1;SAF=0,0;SAP=10762.7,4024.58;SAR=4955,1852;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21,0:0:0:21,0:748,0:-67.6263,-6.32163,0,-67.6263,-6.32163,-67.6263	1/1:98:0,97,1:0:0:97,1:3439,30:-308.627,-29.1999,0,-306.248,-26.5222,-305.947	1/1:99:1,98,0:1:36:98,0:3477,0:-309.054,-26.2037,0,-309.355,-29.5009,-312.293	1/1:127:0,127,0:0:0:127,0:4557,0:-409.499,-38.2308,0,-409.499,-38.2308,-409.499	1/2:32:0,21,11:0:0:21,11:748,377:-91.8114,-30.9334,-24.6118,-61.2249,0,-57.9136	1/2:52:0,23,29:0:0:23,29:824,1034:-151.761,-84.5792,-77.6555,-67.5387,0,-58.8089	1/2:91:1,50,39:1:36:50,39:1784,1368:-253.13,-108.239,-96.1252,-142.252,0,-133.449	1/2:94:0,43,50:0:0:43,50:1536,1735:-265.913,-140.937,-127.993,-125.126,0,-110.075	1/2:48:0,26,22:0:0:26,22:936,781:-139.539,-63.3216,-55.4948,-76.5721,0,-69.9494	1/1:66:0,64,0:0:0:64,0:2299,0:-206.443,-19.2659,0,-206.443,-19.2659,-206.443	1/2:84:0,46,37:0:0:46,37:1644,1287:-238.206,-104.549,-90.7011,-133.719,0,-122.581	1/1:109:0,109,0:0:0:109,0:3916,0:-352.193,-32.8123,0,-352.193,-32.8123,-352.193	1/1:77:0,77,0:0:0:77,0:2741,0:-246.25,-23.1793,0,-246.25,-23.1793,-246.25	1/2:63:0,35,28:0:0:35,28:1252,970:-180.558,-78.7883,-68.2522,-102.12,0,-93.6913	1/2:76:0,38,38:0:0:38,38:1356,1329:-218.707,-108.326,-96.8871,-110.734,0,-99.2946	1/2:57:0,36,20:0:0:36,20:1296,711:-163.244,-57.9762,-47.1391,-105.332,0,-99.311	1/2:70:0,43,27:0:0:43,27:1532,920:-199.113,-74.9184,-61.9741,-124.54,0,-116.412	1/2:42:0,22,20:0:0:22,20:792,705:-122.017,-57.7369,-51.1142,-64.6354,0,-58.6148	1/1:55:0,55,0:0:0:55,0:1976,0:-177.917,-16.5567,0,-177.917,-16.5567,-177.917	1/2:173:0,77,96:0:0:77,96:2742,3395:-498.533,-275.3,-252.121,-223.587,0,-194.688	1/1:105:1,103,1:1:36:103,1:3683,36:-326.802,-28.0648,0,-324.235,-28.1421,-326.871	1/2:97:0,33,64:0:0:33,64:1184,2262:-280.997,-184.455,-174.521,-96.8992,0,-77.6332	1/1:113:0,112,0:0:0:112,0:4006,0:-359.1,-33.7154,0,-359.1,-33.7154,-359.1	1/2:52:0,22,30:0:0:22,30:792,1057:-150.826,-86.3007,-79.678,-64.8813,0,-55.8504	1/1:50:0,50,0:0:0:50,0:1792,0:-160.864,-15.0515,0,-160.864,-15.0515,-160.864	1/2:133:0,58,75:0:0:58,75:2057,2633:-381.127,-214.44,-196.98,-167.039,0,-144.462	1/2:179:0,93,85:0:0:93,85:3336,2943:-510.713,-238.815,-210.819,-271.898,0,-246.311	1/2:34:0,14,20:0:0:14,20:504,700:-98.3803,-57.2739,-53.0595,-41.462,0,-35.4414	1/2:158:0,69,87:0:0:69,87:2450,3076:-449.424,-250.152,-229.381,-199.269,0,-173.079	1/1:134:0,131,0:0:0:131,0:4669,0:-419.417,-39.4349,0,-419.417,-39.4349,-419.417	1/2:92:0,36,54:0:0:36,54:1274,1888:-256.868,-153.181,-142.344,-103.68,0,-87.4239	1/1:6:0,6,0:0:0:6,0:208,0:-19.0527,-1.80618,0,-19.0527,-1.80618,-19.0527	1/2:20:0,11,8:0:0:11,8:392,260:-52.7333,-20.8471,-17.5357,-31.9194,0,-29.5111	2/2:6:0,0,5:0:0:0,5:0,173:-15.6174,-15.6174,-15.6174,-1.50515,-1.50515,0	1/1:1:0,1,0:0:0:1,0:36,0:-3.59727,-0.30103,0,-3.59727,-0.30103,-3.59727	1/2:23:0,13,10:0:0:13,10:455,344:-65.2132,-28.2705,-24.3571,-37.2888,0,-34.2785	1/2:211:0,100,110:0:0:100,110:3579,3848:-604.227,-312.676,-282.573,-291.568,0,-258.455	1/1:58:0,58,0:0:0:58,0:2067,0:-185.981,-17.4597,0,-185.981,-17.4597,-185.981	1/2:83:0,42,41:0:0:42,41:1512,1439:-240.164,-117.114,-104.471,-123.404,0,-111.062	1/1:5:0,5,0:0:0:5,0:180,0:-16.5442,-1.50515,0,-16.5442,-1.50515,-16.5442	1/1:72:0,70,2:0:0:70,2:2504,65:-225.052,-21.0721,0,-219.808,-15.5026,-219.206	1/1:52:0,52,0:0:0:52,0:1859,0:-167.389,-15.6536,0,-167.389,-15.6536,-167.389	1/2:70:0,33,37:0:0:33,37:1187,1280:-200.976,-104.225,-94.2911,-97.1031,0,-85.965	1/2:90:0,44,46:0:0:44,46:1580,1610:-259.599,-130.807,-117.562,-129.146,0,-115.299	1/2:47:0,27,20:0:0:27,20:964,713:-136.29,-58.4248,-50.297,-78.2205,0,-72.1999	1/1:64:0,64,0:0:0:64,0:2296,0:-206.704,-19.2659,0,-206.704,-19.2659,-206.704	1/2:93:0,57,36:0:0:57,36:2048,1270:-270.528,-103.639,-86.4798,-167.244,0,-156.407	1/1:84:0,83,1:0:0:83,1:2960,36:-265.941,-24.9855,0,-263.006,-21.6908,-262.705	1/1:60:0,60,0:0:0:60,0:2156,0:-193.358,-18.0618,0,-193.358,-18.0618,-193.358	1/2:77:0,40,37:0:0:40,37:1428,1275:-219.575,-103.446,-91.4045,-116.479,0,-105.341	1/1:120:0,119,0:0:0:119,0:4255,0:-382.445,-35.8226,0,-382.445,-35.8226,-382.445	1/2:10:0,7,3:0:0:7,3:244,106:-28.7211,-8.89137,-6.78416,-20.179,0,-19.2759	1/1:81:0,81,0:0:0:81,0:2908,0:-261.633,-24.3834,0,-261.633,-24.3834,-261.633	1/1:39:0,39,0:0:0:39,0:1400,0:-126.039,-11.7402,0,-126.039,-11.7402,-126.039	1/2:13:0,9,4:0:0:9,4:316,144:-37.8117,-12.1058,-9.39651,-26.063,0,-24.8588	1/1:89:0,89,0:0:0:89,0:3183,0:-285.911,-26.7917,0,-285.911,-26.7917,-285.911	1/2:48:0,27,21:0:0:27,21:972,7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chr09	19275515	.	CAGC	CAGA,TAGA	157544	PASS	AB=0.515366,0.481371;ABP=10.5511,14.0944;AC=135,53;AF=0.718085,0.281915;AN=188;AO=5547,1792;CIGAR=3M1X,1X2M1X;DP=7361;DPB=7361.25;DPRA=0,0.922427;EPP=12039.5,3894.29;EPPR=5.18177;GTI=2;LEN=1,4;MEANALT=1.8617,2.20968;MQM=59.9825,59.9676;MQMR=60;NS=94;NUMALT=2;ODDS=0.11711;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=198694,63554;QR=23;RO=1;RPL=5547,1792;RPP=12048.2,3894.29;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=1,0;SAP=12039.5,3894.29;SAR=5546,1792;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41,0:0:0:41,0:1456,0:-131.336,-12.3422,0,-131.336,-12.3422,-131.336	1/1:79:0,79,0:0:0:79,0:2836,0:-255.478,-23.7814,0,-255.478,-23.7814,-255.478	1/1:89:0,89,0:0:0:89,0:3173,0:-285.785,-26.7917,0,-285.785,-26.7917,-285.785	1/1:205:0,205,0:0:0:205,0:7331,0:-659.839,-61.7112,0,-659.839,-61.7112,-659.839	1/2:34:0,23,9:0:0:23,9:824,312:-92.5553,-25.3476,-18.4239,-67.1999,0,-64.4907	1/2:13:0,7,6:0:0:7,6:248,214:-38.0032,-17.8016,-15.6944,-20.557,0,-18.7508	1/2:73:0,35,38:0:0:35,38:1248,1337:-210.923,-109.189,-98.6526,-102.088,0,-90.6491	1/2:95:0,53,41:0:0:53,41:1904,1437:-272.251,-116.922,-100.968,-155.323,0,-142.981	1/2:154:0,89,64:0:0:89,64:3192,2238:-442.39,-182.049,-155.258,-260.383,0,-241.117	1/1:95:0,94,1:0:0:94,1:3373,36:-303.425,-28.2968,0,-300.488,-24.9996,-300.187	1/2:37:0,12,25:0:0:12,25:432,889:-108.053,-72.8023,-69.1899,-35.6088,0,-28.0831	1/1:101:0,101,0:0:0:101,0:3628,0:-326.724,-30.404,0,-326.724,-30.404,-326.724	1/2:58:0,21,37:0:0:21,37:756,1326:-170.191,-108.504,-102.183,-62.0456,0,-50.9075	1/2:63:0,30,33:0:0:30,33:1080,1180:-184.698,-96.574,-87.5431,-88.4823,0,-78.5484	1/2:60:0,29,31:0:0:29,31:1044,1114:-176.425,-91.2398,-82.5099,-85.5449,0,-76.213	1/2:48:0,35,13:0:0:35,13:1251,468:-140.545,-38.5463,-28.0102,-102.358,0,-98.4448	1/2:39:0,25,14:0:0:25,14:896,504:-114.559,-41.4837,-33.9579,-73.4346,0,-69.2202	1/2:34:0,18,16:0:0:18,16:648,570:-99.6914,-46.8159,-41.3974,-53.2333,0,-48.4169	1/1:35:0,35,0:0:0:35,0:1246,0:-112.445,-10.5361,0,-112.445,-10.5361,-112.445	1/2:160:0,89,71:0:0:89,71:3204,2521:-467.202,-205.769,-178.977,-261.79,0,-240.417	1/1:201:0,201,0:0:0:201,0:7186,0:-646.792,-60.507,0,-646.792,-60.507,-646.792	1/2:56:0,23,33:0:0:23,33:818,1174:-162.696,-96.0337,-89.1101,-67.0182,0,-57.0842	1/1:125:0,121,4:0:0:121,4:4337,144:-390.143,-36.4246,0,-378.393,-24.3151,-377.189	1/2:32:0,23,9:0:0:23,9:824,317:-93.3662,-26.1603,-19.2366,-67.5596,0,-64.8504	1/1:65:0,65,0:0:0:65,0:2328,0:-209.78,-19.567,0,-209.78,-19.567,-209.78	1/2:200:0,138,62:0:0:138,62:4937,2176:-579.537,-176.952,-135.41,-402.937,0,-384.273	1/2:250:0,137,111:0:0:137,111:4912,3911:-718.948,-318.443,-277.202,-400.529,0,-367.115	1/2:40:0,20,20:0:0:20,20:720,703:-116.326,-57.5736,-51.553,-59.1082,0,-53.0876	1/2:188:0,87,101:0:0:87,101:3120,3571:-545.315,-290.835,-264.645,-254.477,0,-224.073	1/1:100:0,99,1:0:0:99,1:3533,36:-317.818,-29.802,0,-314.881,-26.5047,-314.58	1/2:57:0,22,35:0:0:22,35:788,1249:-166.444,-102.179,-95.5564,-64.6221,0,-54.0861	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/2:15:0,6,9:0:0:6,9:216,321:-44.15,-26.5242,-24.718,-17.9843,0,-15.2751	1/2:6:0,1,5:0:0:1,5:36,174:-17.4355,-14.4961,-14.1951,-3.29724,0,-1.79209	1/1:13:0,13,0:0:0:13,0:460,0:-41.7354,-3.91339,0,-41.7354,-3.91339,-41.7354	1/2:12:0,9,3:0:0:9,3:324,107:-35.5183,-9.07908,-6.36981,-26.7966,0,-25.8935	1/2:153:0,70,83:0:0:70,83:2520,2978:-448.885,-243.266,-222.194,-205.978,0,-180.993	1/1:75:0,75,0:0:0:75,0:2696,0:-242.884,-22.5773,0,-242.884,-22.5773,-242.884	1/2:36:0,17,19:0:0:17,19:612,676:-105.386,-55.4484,-50.3308,-50.2959,0,-44.5764	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:96:0,94,2:0:0:94,2:3380,61:-304.108,-28.2968,0,-299.223,-23.1056,-298.621	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:137:0,75,62:0:0:75,62:2684,2170:-395.775,-176.901,-154.324,-219.228,0,-200.564	1/2:48:0,19,29:0:0:19,29:684,1033:-140.366,-84.5537,-78.8342,-56.1708,0,-47.4409	1/2:55:0,31,24:0:0:31,24:1116,848:-160.478,-69.4143,-60.0824,-91.4198,0,-84.195	1/1:69:0,69,0:0:0:69,0:2445,0:-220.304,-20.7711,0,-220.304,-20.7711,-220.304	1/2:70:0,25,45:0:0:25,45:900,1587:-203.012,-129.573,-122.048,-73.7953,0,-60.2489	1/1:150:0,149,0:0:0:149,0:5325,0:-479.023,-44.8535,0,-479.023,-44.8535,-479.023	1/1:77:0,76,0:0:0:76,0:2716,0:-244.324,-22.8783,0,-244.324,-22.8783,-244.324	1/2:109:0,49,60:0:0:49,60:1764,2143:-319.011,-175.076,-160.325,-144.293,0,-126.231	1/1:84:0,80,3:0:0:80,3:2870,108:-258.181,-24.0824,0,-249.369,-15.2552,-248.465	1/2:23:0,14,9:0:0:14,9:496,324:-67.1988,-26.7966,-22.5822,-40.7598,0,-38.0506	1/1:69:0,69,0:0:0:69,0:2476,0:-223.093,-20.7711,0,-223.093,-20.7711,-223.093	1/1:75:0,74,0:0:0:74,0:2652,0:-238.606,-22.2762,0,-238.606,-22.2762,-238.606	1/2:9:0,8,1:0:0:8,1:284,36:-26.4331,-3.29724,-0.889005,-23.4951,0,-23.1941	1/1:149:1,145,2:1:23:145,2:5185,72:-464.213,-41.9063,0,-458.639,-37.7221,-459.805	1/2:28:0,18,10:0:0:18,10:644,347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chr09	19370243	.	G	A	67004.3	PASS	AB=0.510664;ABP=5.41869;AC=135;AF=0.718085;AN=188;AO=2980;CIGAR=1X;DP=4185;DPB=4185;DPRA=18.1739;EPP=6474;EPPR=2615.29;GTI=4;LEN=1;MEANALT=1.02174;MQM=59.8846;MQMR=59.9667;NS=94;NUMALT=1;ODDS=0.743318;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106245;QR=42387;RO=1203;RPL=2778;RPP=4838.38;RPPR=1754.31;RPR=202;RUN=1;SAF=2778;SAP=4838.38;SAR=202;SRF=1094;SRP=1754.31;SRR=109;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:55:0,55:0:0:55:1964:-176.607,-16.5567,0	1/1:57:0,56:0:0:56:2004:-180.273,-16.8577,0	0/1:11:1,10:1:36:10:356:-29.069,0,-0.286945	0/1:19:12,7:12:424:7:252:-17.3094,0,-32.7768	0/1:40:16,24:16:563:24:847:-64.5071,0,-38.958	0/1:33:14,19:14:495:19:672:-50.8728,0,-34.949	0/1:38:24,14:24:848:14:504:-34.2138,0,-65.2005	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	0/1:51:22,29:22:757:29:1008:-75.6755,0,-53.0932	1/1:68:0,68:0:0:68:2428:-218.768,-20.47,0	0/1:62:23,39:23:820:39:1387:-106.464,0,-55.4587	0/1:73:36,37:36:1283:37:1324:-97.4763,0,-93.7974	0/1:53:25,28:25:888:28:1004:-74.6928,0,-64.2844	0/1:58:29,29:29:992:29:1044:-76.8151,0,-72.1266	0/1:44:17,27:17:604:27:964:-73.8315,0,-41.4453	0/1:52:22,30:22:774:30:1067:-80.6877,0,-54.3267	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:44:25,19:25:892:19:684:-48.6442,0,-67.3544	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:38:22,16:22:773:16:572:-40.3743,0,-58.448	1/1:24:0,24:0:0:24:848:-76.3231,-7.22472,0	0/1:29:8,21:8:271:21:747:-58.8244,0,-15.9896	1/1:29:1,28:1:36:28:992:-85.9961,-5.1316,0	0/1:115:56,59:56:1983:59:2112:-155.727,0,-144.126	0/1:72:42,30:42:1474:30:1033:-71.6022,0,-111.149	0/1:43:22,21:22:780:21:752:-55.062,0,-57.5741	0/1:103:57,46:57:2040:46:1644:-117.212,0,-152.866	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	0/1:45:18,27:18:635:27:956:-72.8086,0,-43.9306	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:14:8,6:8:279:6:216:-15.5761,0,-21.2331	0/1:239:121,118:121:4258:118:4220:-307.977,0,-311.459	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	0/1:79:41,38:41:1438:38:1364:-99.2793,0,-105.933	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:41:0,41:0:0:41:1463:-131.965,-12.3422,0	0/1:32:13,19:13:443:19:680:-51.8962,0,-30.5626	0/1:61:34,27:34:1203:27:964:-68.714,0,-90.2122	0/1:59:31,28:31:1087:28:990:-71.6455,0,-80.3776	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	0/1:27:13,14:13:464:14:504:-37.5703,0,-33.9697	1/1:54:0,54:0:0:54:1923:-173.333,-16.2556,0	1/1:37:0,37:0:0:37:1320:-119.101,-11.1381,0	0/1:49:32,17:32:1140:17:604:-39.9395,0,-88.1587	1/1:56:0,56:0:0:56:1996:-179.914,-16.8577,0	0/1:6:2,4:2:63:4:140:-11.1384,0,-4.17697	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:32:0,32:0:0:32:1144:-102.778,-9.63296,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:75:0,75:0:0:75:2662:-239.826,-22.5773,0	0/1:25:10,15:10:351:15:519:-39.5116,0,-24.4009	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:27:20,7:20:712:7:244:-14.1716,0,-56.2788	0/1:74:25,49:25:878:49:1752:-135.688,0,-57.0597	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:74:36,38:36:1276:38:1364:-100.784,0,-92.8668	1/1:53:1,52:1:36:52:1847:-162.865,-12.3563,0	0/1:17:7,10:7:243:10:356:-27.2637,0,-17.09	1/1:29:0,29:0:0:29:1036:-93.5531,-8.72987,0	0/1:37:16,21:16:536:21:743:-56.0544,0,-37.4183	1/1:55:0,55:0:0:55:1960:-176.674,-16.5567,0	1/1:53:3,50:3:108:50:1788:-151.132,-5.88418,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:72:26,45:26:923:45:1603:-122.827,0,-61.654	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:34:17,17:17:584:17:604:-44.4556,0,-42.6434	1/1:29:0,29:0:0:29:1032:-93.1925,-8.72987,0	1/1:34:1,33:1:36:33:1176:-102.531,-6.63675,0	0/1:34:17,17:17:608:17:608:-44.817,0,-44.817	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:36:0,36:0:0:36:1292:-116.583,-10.8371,0	0/1:30:15,15:15:536:15:540:-39.9056,0,-39.5439	1/1:50:0,50:0:0:50:1785:-160.931,-15.0515,0	1/1:53:0,53:0:0:53:1900:-171.258,-15.9546,0	1/1:48:0,48:0:0:48:1695:-152.835,-14.4494,0	0/1:53:20,33:20:693:33:1188:-91.2736,0,-46.735	1/1:122:0,122:0:0:122:4328:-389.65,-36.7257,0	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:69:33,36:33:1176:36:1296:-96.1729,0,-85.3767	1/1:73:0,73:0:0:73:2583:-232.72,-21.9752,0	0/1:73:32,41:32:1140:41:1463:-109.99,0,-80.934	0/1:119:72,47:72:2485:47:1684:-116.024,0,-188.078	0/1:61:35,26:35:1243:26:936:-66.1966,0,-93.811	1/1:22:0,22:0:0:22:780:-70.5226,-6.62266,0	1/1:95:0,95:0:0:95:3387:-305,-28.5979,0
chr09	19370264	.	A	G	68402.7	PASS	AB=0.534557;ABP=29.5742;AC=135;AF=0.718085;AN=188;AO=3417;CIGAR=1X;DP=4622;DPB=4622;DPRA=12.414;EPP=7370.91;EPPR=2595.78;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9719;MQMR=60;NS=94;NUMALT=1;ODDS=0.3489;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119218;QR=42799;RO=1202;RPL=6;RPP=7370.91;RPPR=2595.78;RPR=3411;RUN=1;SAF=0;SAP=7422.93;SAR=3417;SRF=0;SRP=2613.12;SRR=1202;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:574:-51.976,-5.11751,0	1/1:47:0,47:0:0:47:1662:-149.867,-14.1484,0	1/1:37:0,37:0:0:37:1307:-117.931,-11.1381,0	1/1:83:0,83:0:0:83:2932:-264.115,-24.9855,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:27:11,16:11:381:16:549:-41.6044,0,-26.4928	0/1:66:38,28:38:1359:28:980:-68.6422,0,-102.742	0/1:34:11,23:11:383:23:789:-61.089,0,-24.5682	0/1:53:25,28:25:892:28:967:-71.3832,0,-64.6451	1/1:47:0,47:0:0:47:1652:-148.88,-14.1484,0	0/1:58:27,31:27:950:31:1095:-81.3994,0,-68.3537	1/1:65:1,64:1:36:64:2183:-193.135,-15.9687,0	0/1:85:29,56:29:1025:56:1963:-151.358,0,-66.9731	0/1:79:43,36:43:1533:36:1255:-89.4673,0,-114.48	0/1:56:23,33:23:828:33:1153:-87.2165,0,-57.9864	0/1:42:16,26:16:568:26:899:-68.5799,0,-38.8086	0/1:83:42,41:42:1480:41:1439:-104.82,0,-108.506	0/1:36:22,14:22:784:14:472:-31.9629,0,-60.0468	1/1:49:0,49:0:0:49:1706:-153.821,-14.7505,0	0/1:53:25,28:25:888:28:956:-70.3899,0,-64.2844	1/1:63:0,63:0:0:63:2095:-188.805,-18.9649,0	0/1:42:25,17:25:900:17:584:-40.2375,0,-68.6778	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:52:29,23:29:1036:23:780:-54.8554,0,-77.9004	1/1:33:0,33:0:0:33:1152:-103.983,-9.93399,0	0/1:81:24,56:24:832:56:1961:-152.322,0,-50.7523	0/1:89:32,57:32:1148:57:1999:-153.389,0,-76.8382	0/1:35:18,17:18:644:17:591:-42.9799,0,-47.7545	0/1:69:38,31:38:1364:31:1091:-77.7277,0,-102.29	1/1:58:0,58:0:0:58:2044:-184.23,-17.4597,0	0/1:51:28,23:28:995:23:800:-56.9632,0,-74.5115	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/1:199:93,106:93:3313:106:3678:-271.322,0,-238.483	1/1:63:0,63:0:0:63:2187:-197.094,-18.9649,0	0/1:69:31,38:31:1100:38:1308:-97.2453,0,-78.5392	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:32:0,32:0:0:32:1122:-101.286,-9.63296,0	1/1:34:0,34:0:0:34:1183:-106.771,-10.235,0	0/1:53:28,25:28:993:25:880:-63.5612,0,-73.7279	0/1:70:31,39:31:1092:39:1388:-104.147,0,-77.5175	0/1:56:30,26:30:1068:26:884:-63.0093,0,-79.5744	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:29:13,16:13:468:16:572:-43.0836,0,-33.7298	1/1:45:0,45:0:0:45:1582:-142.666,-13.5464,0	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:54:29,25:29:1044:25:883:-63.5318,0,-78.0192	1/1:67:0,66:0:0:66:2318:-208.518,-19.868,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:51:0,51:0:0:51:1793:-161.65,-15.3525,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:47:0,47:0:0:47:1601:-144.371,-14.1484,0	0/1:33:20,13:20:712:13:468:-32.5257,0,-54.4727	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:9:2,7:2:72:7:243:-19.4982,0,-4.12745	0/1:38:20,18:20:720:18:624:-45.0423,0,-53.6896	0/1:106:45,61:45:1595:61:2085:-156.007,0,-111.93	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:56:28,28:28:1008:28:996:-73.0972,0,-74.1787	1/1:66:0,66:0:0:66:2346:-211.399,-19.868,0	0/1:31:20,11:20:720:11:392:-26.2881,0,-55.7968	1/1:36:0,36:0:0:36:1214:-109.545,-10.8371,0	0/1:49:21,28:21:752:28:974:-73.2202,0,-53.2558	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:55:1,54:1:36:54:1858:-163.897,-12.9584,0	1/1:48:0,48:0:0:48:1673:-150.854,-14.4494,0	0/1:56:27,29:27:949:29:1020:-75.2545,0,-68.8651	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:81:0,81:0:0:81:2786:-250.978,-24.3834,0	0/1:23:12,11:12:428:11:392:-28.6964,0,-31.9351	1/1:67:0,67:0:0:67:2299:-206.677,-20.169,0	1/1:59:0,59:0:0:59:2045:-184.316,-17.7608,0	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6107	1/1:48:0,48:0:0:48:1708:-154.005,-14.4494,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:33:0,33:0:0:33:1160:-104.707,-9.93399,0	0/1:66:24,42:24:864:42:1469:-112.631,0,-58.2146	1/1:85:0,85:0:0:85:2983:-268.703,-25.5876,0	1/1:95:1,94:1:36:94:3286:-292.362,-24.9996,0	1/1:66:0,66:0:0:66:2351:-211.85,-19.868,0	0/1:48:19,29:19:680:29:1009:-76.6695,0,-47.0797	1/1:135:4,131:4:140:131:4536:-395.472,-27.6945,0	0/1:31:13,18:13:460:18:621:-46.8807,0,-32.4034	0/1:69:29,40:29:1036:40:1374:-103.184,0,-72.7828	1/1:78:0,77:0:0:77:2621:-235.838,-23.1793,0	0/1:57:17,40:17:608:40:1416:-110.579,0,-37.8933	0/1:113:53,60:53:1878:60:2107:-155.883,0,-135.281	0/1:64:36,28:36:1277:28:977:-68.9554,0,-95.9652	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:98:0,98:0:0:98:3464:-311.975,-29.5009,0
chr09	19401111	.	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chr09	19427110	.	G	A	20088.9	PASS	AB=0.538315;ABP=29.8008;AC=56;AF=0.301075;AN=186;AO=1183;CIGAR=1X;DP=4025;DPB=4025;DPRA=0.994848;EPP=2571.86;EPPR=6167.82;GTI=0;LEN=1;MEANALT=1.01754;MQM=60;MQMR=60;NS=93;NUMALT=1;ODDS=4.90998;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42210;QR=100141;RO=2839;RPL=1183;RPP=2571.86;RPPR=6167.82;RPR=0;RUN=1;SAF=1183;SAP=2571.86;SAR=0;SRF=2839;SRP=6167.82;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8171	0/0:116:115,0:115:4012:0:0:0,-34.6184,-360.912	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:29:19,10:19:672:10:360:-24.0144,0,-52.077	0/1:37:18,19:18:644:19:684:-50.7522,0,-47.1525	0/1:37:24,13:24:851:13:468:-31.3215,0,-65.7713	0/1:47:14,33:14:492:33:1180:-92.3596,0,-30.4639	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/1:26:9,17:9:316:17:612:-47.5867,0,-20.9521	0/0:57:57,0:57:1995:0:0:0,-17.1587,-179.824	0/1:54:33,21:33:1176:21:752:-51.7506,0,-89.8921	0/1:33:12,21:12:416:21:752:-58.0723,0,-27.8376	0/1:53:27,26:27:960:26:927:-67.7928,0,-70.7617	0/1:45:22,23:22:777:23:815:-60.1244,0,-56.704	0/1:30:18,12:18:636:12:419:-29.0118,0,-48.5371	0/1:33:19,14:19:671:14:500:-35.4022,0,-50.7818	0/0:23:23,0:23:792:0:0:0,-6.92369,-71.5942	0/1:30:15,15:15:531:15:527:-38.7293,0,-39.091	0/0:74:74,0:74:2634:0:0:0,-22.2762,-237.306	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	0/0:54:54,0:54:1935:0:0:0,-16.2556,-174.426	0/1:24:13,11:13:435:11:379:-27.2153,0,-32.2438	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:99:48,51:48:1720:51:1816:-133.919,0,-125.284	0/1:94:41,53:41:1472:53:1891:-142.171,0,-104.479	0/1:23:14,9:14:481:9:324:-22.5822,0,-36.6914	0/1:120:56,64:56:1992:64:2273:-168.707,0,-143.431	0/0:82:82,0:82:2903:0:0:0,-24.6845,-261.505	0/1:47:28,19:28:983:19:684:-47.7419,0,-74.6341	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	.:.:.:.:.:.:.:.	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:13:5,8:5:180:8:280:-21.6253,0,-12.6387	0/1:120:61,59:61:2159:59:2108:-153.866,0,-158.453	0/0:37:37,0:37:1301:0:0:0,-11.1381,-117.389	0/1:30:11,19:11:392:19:684:-52.8594,0,-26.5892	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:61:60,1:60:2127:1:36:0,-14.7646,-188.1	0/0:20:20,0:20:698:0:0:0,-6.0206,-63.1414	0/1:37:11,26:11:392:26:919:-71.8881,0,-24.4819	0/1:61:38,23:38:1315:23:807:-54.5858,0,-100.283	0/1:42:18,24:18:639:24:851:-64.2662,0,-45.195	0/0:49:49,0:49:1740:0:0:0,-14.7505,-156.884	0/1:21:7,14:7:248:14:500:-39.0145,0,-16.3426	0/0:66:65,1:65:2295:1:36:0,-16.2697,-203.211	0/0:46:46,0:46:1591:0:0:0,-13.8474,-143.476	0/1:66:23,43:23:786:43:1535:-118.574,0,-51.1862	0/0:25:25,0:25:874:0:0:0,-7.52575,-78.9752	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/1:13:5,8:5:176:8:284:-21.99,0,-12.2716	0/0:43:43,0:43:1510:0:0:0,-12.9443,-136.189	0/1:41:20,21:20:716:21:746:-55.1223,0,-52.4255	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:16:11,5:11:373:5:180:-11.7356,0,-29.0788	0/1:31:11,20:11:396:20:717:-55.5261,0,-26.6508	0/1:80:38,42:38:1314:42:1499:-111.121,0,-94.4754	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:133:57,76:57:2015:76:2728:-205.726,0,-141.586	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/1:32:15,17:15:536:17:612:-45.7805,0,-38.9419	0/0:28:28,0:28:988:0:0:0,-8.42884,-89.2339	0/1:98:40,57:40:1424:57:2040:-154.312,0,-98.8978	0/0:47:46,1:46:1643:1:36:0,-10.5501,-144.56	0/0:15:15,0:15:524:0:0:0,-4.51545,-47.4896	0/0:20:20,0:20:704:0:0:0,-6.0206,-63.6845	0/1:24:10,14:10:356:14:500:-38.1115,0,-25.1565	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:47:15,32:15:531:32:1152:-89.8417,0,-33.9735	0/0:34:33,1:33:1175:1:36:0,-6.63674,-102.459	0/0:112:112,0:112:3946:0:0:0,-33.7154,-355.334	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/0:54:54,0:54:1913:0:0:0,-16.2556,-172.445	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:32:32,0:32:1128:0:0:0,-9.63296,-101.828	0/1:34:14,20:14:481:20:712:-54.1716,0,-33.38	0/0:73:72,0:72:2563:0:0:0,-21.6742,-230.56	0/0:48:48,0:48:1697:0:0:0,-14.4494,-153.014	0/0:44:44,0:44:1519:0:0:0,-13.2453,-136.998	0/1:55:33,22:33:1163:22:792:-55.049,0,-88.4195	0/0:109:105,4:105:3665:4:144:0,-19.4987,-316.741	0/1:13:7,6:7:244:6:216:-15.8771,0,-18.386	0/1:47:22,25:22:764:25:892:-66.4513,0,-54.9311	0/0:45:45,0:45:1577:0:0:0,-13.5463,-142.218	0/1:33:8,25:8:284:25:893:-70.7555,0,-15.9694	0/1:44:19,25:19:672:25:896:-67.715,0,-47.5615	0/1:61:17,44:17:579:44:1549:-121.337,0,-34.0682	0/0:91:91,0:91:3219:0:0:0,-27.3937,-289.932	0/0:75:75,0:75:2606:0:0:0,-22.5772,-234.789
chr09	19466079	.	C	G	79452.9	PASS	AB=0.543471;ABP=52.6627;AC=134;AF=0.712766;AN=188;AO=4715;CIGAR=1X;DP=6118;DPB=6118;DPRA=33.2283;EPP=10146.2;EPPR=2993.28;GTI=7;LEN=1;MEANALT=1.06522;MQM=33.1332;MQMR=57.5963;NS=94;NUMALT=1;ODDS=0.997676;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168003;QR=49892;RO=1397;RPL=4705;RPP=10154.8;RPPR=2993.28;RPR=10;RUN=1;SAF=1;SAP=10232.8;SAR=4714;SRF=0;SRP=3036.56;SRR=1397;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1688:-129.498,-14.1484,0	1/1:39:0,39:0:0:39:1382:-103.169,-11.7402,0	1/1:69:0,69:0:0:69:2468:-182.941,-20.7711,0	1/1:148:0,148:0:0:148:5299:-420.219,-44.5524,0	0/1:29:3,26:3:108:26:936:-65.9232,0,-1.34051	0/1:48:14,34:14:504:34:1224:-81.2468,0,-31.2016	0/1:86:47,39:47:1671:39:1400:-85.2179,0,-124.737	0/1:75:28,47:28:996:47:1679:-105.249,0,-67.038	0/1:53:21,32:21:743:32:1152:-69.0425,0,-51.1733	1/1:69:0,69:0:0:69:2451:-195.176,-20.7711,0	0/1:36:16,20:16:567:20:716:-45.4902,0,-40.4936	1/1:70:0,70:0:0:70:2496:-182.201,-21.0721,0	0/1:65:27,38:27:968:38:1341:-79.4803,0,-67.7736	0/1:53:26,27:26:932:27:953:-56.2571,0,-68.1349	0/1:59:35,24:35:1256:24:852:-50.8683,0,-95.5799	0/1:47:17,30:17:593:30:1060:-64.8683,0,-39.4986	0/1:41:19,22:19:671:22:788:-46.0851,0,-48.3004	0/1:28:16,12:16:568:12:428:-23.16,0,-42.9066	1/1:19:0,19:0:0:19:676:-49.6784,-5.71957,0	0/1:68:28,40:28:1004:40:1427:-95.6811,0,-70.1345	1/1:116:0,116:0:0:116:4136:-313.617,-34.9195,0	0/1:54:19,35:19:684:35:1247:-88.1112,0,-45.6064	1/1:110:0,110:0:0:110:3931:-318.132,-33.1133,0	0/1:32:15,17:15:540:17:608:-37.9966,0,-39.2803	1/1:77:0,77:0:0:77:2756:-217.653,-23.1793,0	0/1:142:71,71:71:2531:71:2519:-167.097,0,-185.277	0/1:125:47,78:47:1680:78:2784:-177.117,0,-113.72	0/1:21:9,12:9:324:12:428:-26.6938,0,-23.1702	0/1:178:88,90:88:3159:90:3193:-208.668,0,-230.699	1/1:92:0,92:0:0:92:3258:-250.99,-27.6948,0	0/1:97:41,56:41:1455:56:1974:-128.762,0,-102.029	1/1:8:0,8:0:0:8:288:-22.7852,-2.40824,0	0/1:6:2,4:2:72:4:144:-9.49561,0,-5.02729	1/1:2:0,2:0:0:2:72:-5.51525,-0.60206,0	0/1:7:1,6:1:36:6:216:-13.858,0,-1.37349	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0648	0/1:141:76,65:76:2732:65:2319:-146.679,0,-203.507	1/1:83:0,83:0:0:83:2951:-229.764,-24.9855,0	0/1:17:7,10:7:243:10:360:-21.1461,0,-17.0544	1/1:2:0,2:0:0:2:72:-5.98566,-0.60206,0	1/1:100:1,99:1:36:99:3501:-265.897,-26.5064,0	1/1:23:0,23:0:0:23:812:-61.2214,-6.92369,0	0/1:117:29,88:29:1036:88:3156:-217.81,0,-58.0924	0/1:42:25,17:25:892:17:597:-35.1838,0,-67.9218	0/1:41:28,13:28:996:13:451:-24.136,0,-77.5589	1/1:82:0,82:0:0:82:2940:-246.576,-24.6845,0	0/1:40:17,23:17:604:23:820:-51.5768,0,-42.4932	1/1:118:0,118:0:0:118:4197:-334.774,-35.5215,0	1/1:63:0,63:0:0:63:2237:-178.483,-18.9649,0	0/1:77:36,41:36:1292:41:1464:-93.4013,0,-93.3832	1/1:89:0,89:0:0:89:3170:-261.849,-26.7917,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:77:0,77:0:0:77:2737:-206.201,-23.1793,0	1/1:39:0,39:0:0:39:1383:-114.454,-11.7402,0	0/1:6:2,4:2:72:4:144:-8.93405,0,-5.0235	1/1:107:0,107:0:0:107:3801:-289.474,-32.2102,0	0/1:26:15,11:15:532:11:396:-24.7022,0,-40.3843	1/1:4:0,4:0:0:4:144:-11.3625,-1.20412,0	0/1:21:4,17:4:144:17:596:-43.3557,0,-6.99199	0/1:72:32,40:32:1144:40:1432:-89.1135,0,-81.3206	0/1:79:34,45:34:1220:45:1616:-102.739,0,-86.1762	0/1:3:1,2:1:36:2:72:-5.30399,0,-2.69518	0/1:213:122,90:122:4358:90:3167:-196.77,0,-326.585	1/1:70:4,66:4:144:66:2350:-176.102,-7.75848,0	0/1:60:27,33:27:955:33:1180:-72.1797,0,-68.1625	1/1:45:0,45:0:0:45:1608:-127.149,-13.5464,0	0/1:120:69,51:69:2472:51:1820:-110.504,0,-185.889	1/1:97:1,96:1:36:96:3431:-268.293,-25.6016,0	1/1:28:0,28:0:0:28:995:-75.8224,-8.42884,0	1/1:42:0,42:0:0:42:1490:-110.144,-12.6433,0	0/1:39:23,15:23:812:15:540:-32.8707,0,-61.5853	0/1:28:14,14:14:500:14:496:-30.8668,0,-36.9009	1/1:116:0,116:0:0:116:4129:-307.731,-34.9195,0	0/1:50:27,23:27:964:23:828:-45.3965,0,-71.4244	1/1:132:0,132:0:0:132:4703:-362.682,-39.736,0	1/1:146:0,146:0:0:146:5215:-415.616,-43.9504,0	0/1:104:10,94:10:356:94:3380:-228.322,0,-0.939805	1/1:90:4,86:4:140:86:3072:-211.639,-14.1598,0	0/1:15:2,13:2:72:13:455:-29.3596,0,-2.31423	1/1:81:0,81:0:0:81:2862:-220.524,-24.3834,0	0/1:59:26,33:26:919:33:1167:-70.7443,0,-65.0766	1/1:163:4,159:4:144:159:5666:-437.911,-35.7543,0	1/1:47:0,46:0:0:46:1621:-127.904,-13.8474,0	1/1:48:0,48:0:0:48:1703:-136.653,-14.4494,0	0/1:33:13,19:13:468:19:676:-44.2557,0,-32.3612	1/1:87:3,84:3:108:84:2999:-229.04,-16.1144,0	0/1:22:12,10:12:428:10:360:-19.7925,0,-32.1309	0/1:52:26,25:26:936:25:887:-49.1467,0,-68.6168	1/1:39:0,39:0:0:39:1400:-103.018,-11.7402,0	0/1:49:21,27:21:743:27:950:-57.9048,0,-52.3609	0/1:85:43,42:43:1540:42:1504:-89.5584,0,-112.548	0/1:64:45,19:45:1612:19:671:-33.8878,0,-125.958	1/1:143:0,143:0:0:143:5112:-406.123,-43.0473,0	1/1:62:0,62:0:0:62:2228:-174.884,-18.6639,0
chr09	19530904	.	ATA	ATG,GTG	148691	PASS	AB=0.644128,0.354093;ABP=408.62,418.697;AC=148,40;AF=0.787234,0.212766;AN=188;AO=4792,825;CIGAR=2M1X,1X1M1X;DP=5635;DPB=5635;DPRA=0,1.1217;EPP=909.027,1700.2;EPPR=11.6962;GTI=6;LEN=1,3;MEANALT=1.70213,2.13208;MQM=59.4508,54.1442;MQMR=60;NS=94;NUMALT=2;ODDS=1.37721;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=170557,29198;QR=144;RO=4;RPL=4777,818;RPP=10278.8,1734.19;RPPR=11.6962;RPR=15,7;RUN=1,1;SAF=3088,4;SAP=870.99,1759.9;SAR=1704,821;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24,0:0:0:24,0:861,0:-77.7645,-7.22472,0,-77.7645,-7.22472,-77.7645	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5026,-9.0309,0,-97.5026,-9.0309,-97.5026	1/1:58:0,58,0:0:0:58,0:2084,0:-187.622,-17.4597,0,-187.622,-17.4597,-187.622	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/1:19:0,19,0:0:0:19,0:684,0:-61.8857,-5.71957,0,-61.8857,-5.71957,-61.8857	1/2:12:0,9,3:0:0:9,3:305,106:-33.4906,-8.7719,-6.06263,-25.0625,0,-24.1594	1/2:30:0,27,3:0:0:27,3:959,106:-87.1194,-8.97729,-0.84948,-78.4952,0,-77.5921	1/1:26:0,25,1:0:0:25,1:878,36:-78.9393,-7.52575,0,-76.0097,-4.23755,-75.7087	1/2:28:0,23,5:0:0:23,5:816,180:-80.994,-14.8198,-7.89611,-66.5288,0,-65.0237	1/1:31:0,31,0:0:0:31,0:1097,0:-99.0218,-9.33193,0,-99.0218,-9.33193,-99.0218	1/2:100:0,88,12:0:0:88,12:3143,417:-290.465,-34.2255,-7.73488,-256.587,0,-252.975	1/1:115:1,114,0:1:36:114,0:4035,0:-359.499,-31.0202,0,-359.8,-34.3174,-362.737	1/2:74:0,48,26:0:0:48,26:1720,930:-216.266,-75.9885,-61.539,-140.635,0,-132.808	1/2:57:0,46,11:0:0:46,11:1648,392:-166.428,-32.053,-18.2056,-134.729,0,-131.418	1/2:49:0,33,16:0:0:33,16:1184,576:-143.785,-47.2285,-37.2945,-96.915,0,-92.0985	1/2:50:0,36,14:0:0:36,14:1288,500:-145.819,-40.9195,-30.0824,-105.255,0,-101.041	1/2:44:0,26,17:0:0:26,17:932,602:-124.506,-48.5155,-40.6888,-75.9854,0,-70.8679	1/2:33:0,23,10:0:0:23,10:824,360:-96.8445,-29.6517,-22.728,-67.5514,0,-64.5411	1/1:105:0,105,0:0:0:105,0:3701,0:-333.252,-31.6082,0,-333.252,-31.6082,-333.252	1/2:46:0,25,21:0:0:25,21:896,743:-132.585,-59.6,-52.0742,-73.3365,0,-67.0149	1/1:57:0,57,0:0:0:57,0:2024,0:-182.415,-17.1587,0,-182.415,-17.1587,-182.415	1/2:17:0,5,12:0:0:5,12:180,416:-48.7671,-34.0767,-32.5716,-15.046,0,-11.4336	1/1:38:0,37,0:0:0:37,0:1320,0:-118.798,-11.1381,0,-118.798,-11.1381,-118.798	1/2:22:0,13,9:0:0:13,9:468,312:-63.8596,-25.665,-21.7516,-38.5463,0,-35.837	1/1:32:0,31,0:0:0:31,0:1105,0:-99.3951,-9.33193,0,-99.3951,-9.33193,-99.3951	1/2:70:0,41,28:0:0:41,28:1454,984:-198.638,-80.1759,-67.8336,-118.583,0,-110.154	1/2:47:0,27,20:0:0:27,20:934,693:-132.377,-56.4809,-48.3531,-76.2414,0,-70.2208	1/2:33:0,23,10:0:0:23,10:828,356:-96.7273,-29.1623,-22.2387,-67.9204,0,-64.9101	1/2:66:0,21,45:0:0:21,45:752,1599:-191.886,-130.559,-124.238,-61.6837,0,-48.1374	1/1:30:0,30,0:0:0:30,0:1056,0:-95.2548,-9.0309,0,-95.2548,-9.0309,-95.2548	1/2:39:0,14,25:0:0:14,25:477,880:-110.444,-71.7493,-67.5349,-39.0387,0,-31.513	1/1:131:0,131,0:0:0:131,0:4676,0:-420.959,-39.4349,0,-420.959,-39.4349,-420.959	1/1:64:0,64,0:0:0:64,0:2275,0:-204.992,-19.2659,0,-204.992,-19.2659,-204.992	1/1:155:0,155,0:0:0:155,0:5515,0:-496.369,-46.6597,0,-496.369,-46.6597,-496.369	1/1:292:2,288,1:2:72:288,1:10252,28:-915.514,-80.7893,0,-913.899,-84.495,-919.473	1/1:104:0,100,4:0:0:100,4:3568,141:-320.924,-30.103,0,-309.472,-18.2995,-308.268	1/2:157:0,87,70:0:0:87,70:3123,2506:-459.193,-204.46,-178.27,-255.092,0,-234.02	1/1:27:0,27,0:0:0:27,0:957,0:-86.3546,-8.12781,0,-86.3546,-8.12781,-86.3546	1/2:132:0,115,17:0:0:115,17:4076,610:-381.697,-49.7908,-15.1723,-332.263,0,-327.145	1/1:81:0,81,0:0:0:81,0:2883,0:-259.693,-24.3834,0,-259.693,-24.3834,-259.693	1/1:31:0,31,0:0:0:31,0:1088,0:-98.2259,-9.33193,0,-98.2259,-9.33193,-98.2259	1/1:81:0,80,1:0:0:80,1:2837,34:-255.063,-24.0824,0,-252.392,-21.0807,-252.091	1/2:28:0,17,11:0:0:17,11:604,390:-81.2913,-32.0818,-26.9643,-49.5639,0,-46.2525	1/2:50:0,32,18:0:0:32,18:1152,646:-146.997,-53.001,-43.368,-94.3548,0,-88.9363	1/2:59:0,32,27:0:0:32,27:1144,952:-171.006,-77.7238,-68.0909,-93.6366,0,-85.5087	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7892,-9.0309,0,-96.7892,-9.0309,-96.7892	1/2:17:0,12,5:0:0:12,5:432,170:-49.2352,-13.9697,-10.3573,-35.6088,0,-34.1037	1/1:59:0,59,0:0:0:59,0:2108,0:-189.984,-17.7608,0,-189.984,-17.7608,-189.984	1/1:16:0,16,0:0:0:16,0:568,0:-51.4519,-4.81648,0,-51.4519,-4.81648,-51.4519	1/2:55:0,25,30:0:0:25,30:896,1066:-160.222,-87.1444,-79.6187,-73.4346,0,-64.4037	1/1:25:0,25,0:0:0:25,0:891,0:-80.506,-7.52575,0,-80.506,-7.52575,-80.506	1/1:86:0,81,4:0:0:81,4:2884,142:-259.087,-24.3834,0,-247.609,-12.8075,-246.405	1/1:21:0,20,1:0:0:20,1:712,36:-64.0369,-6.0206,0,-61.1074,-2.7324,-60.8064	1/1:32:0,31,0:0:0:31,0:1103,0:-99.3246,-9.33193,0,-99.3246,-9.33193,-99.3246	1/1:37:0,35,0:0:0:35,0:1239,0:-111.4,-10.5361,0,-111.4,-10.5361,-111.4	1/1:37:0,36,1:0:0:36,1:1292,36:-116.224,-10.8371,0,-113.291,-7.54494,-112.99	1/2:20:0,14,6:0:0:14,6:500,198:-57.1083,-16.3263,-12.1119,-41.1199,0,-39.3137	1/1:79:0,76,2:0:0:76,2:2685,68:-241.576,-22.8783,0,-236.062,-17.3142,-235.46	1/1:59:0,56,3:0:0:56,3:1951,104:-175.506,-16.8577,0,-167.111,-8.11788,-166.208	1/2:26:0,21,5:0:0:21,5:728,178:-73.869,-14.7142,-8.39253,-59.5062,0,-58.0011	1/2:67:0,31,35:0:0:31,35:1112,1232:-190.617,-99.9158,-90.5839,-90.7056,0,-80.1696	1/1:52:0,52,0:0:0:52,0:1844,0:-166.228,-15.6536,0,-166.228,-15.6536,-166.228	1/2:134:0,54,79:0:0:54,79:1929,2803:-385.309,-228.041,-211.785,-157.265,0,-133.483	1/1:45:0,44,1:0:0:44,1:1576,36:-141.752,-13.2453,0,-138.817,-9.95067,-138.516	1/2:17:0,12,5:0:0:12,5:428,180:-49.9114,-15.0234,-11.4111,-35.2464,0,-33.7413	1/1:16:0,16,0:0:0:16,0:563,0:-50.9941,-4.81648,0,-50.9941,-4.81648,-50.9941	1/2:53:0,37,16:0:0:37,16:1311,557:-152.226,-45.4272,-34.2891,-107.148,0,-102.331	1/1:43:0,43,0:0:0:43,0:1548,0:-139.611,-12.9443,0,-139.611,-12.9443,-139.611	1/1:174:0,173,0:0:0:173,0:6093,0:-547.954,-52.0782,0,-547.954,-52.0782,-547.954	1/1:30:0,30,0:0:0:30,0:1061,0:-95.7945,-9.0309,0,-95.7945,-9.0309,-95.7945	1/2:58:0,39,19:0:0:39,19:1380,671:-166.961,-54.6129,-42.8727,-112.7,0,-106.98	1/1:54:0,51,3:0:0:51,3:1828,108:-164.439,-15.3525,0,-155.801,-6.36128,-154.898	1/1:24:0,24,0:0:0:24,0:856,0:-77.3161,-7.22472,0,-77.3161,-7.22472,-77.3161	1/2:39:0,19,20:0:0:19,20:684,697:-112.623,-56.8059,-51.0863,-56.1708,0,-50.1502	1/1:56:0,56,0:0:0:56,0:1967,0:-176.676,-16.8577,0,-176.676,-16.8577,-176.676	1/1:44:0,44,0:0:0:44,0:1567,0:-141.261,-13.2453,0,-141.261,-13.2453,-141.261	1/1:13:0,13,0:0:0:13,0:451,0:-40.8637,-3.91339,0,-40.8637,-3.91339,-40.8637	1/1:50:0,50,0:0:0:50,0:1788,0:-161.193,-15.0515,0,-161.193,-15.0515,-161.193	1/1:75:0,69,6:0:0:69,6:2480,208:-223.055,-20.7711,0,-206.22,-3.58959,-204.414	1/1:33:0,33,0:0:0:33,0:1188,0:-107.218,-9.93399,0,-107.218,-9.93399,-107.218	1/2:17:0,7,10:0:0:7,10:252,333:-47.7413,-27.1677,-25.0605,-20.9217,0,-17.9114	1/1:54:0,54,0:0:0:54,0:1912,0:-172.302,-16.2556,0,-172.302,-16.2556,-172.302	1/1:100:0,100,0:0:0:100,0:3588,0:-323.003,-30.103,0,-323.003,-30.103,-323.003	1/1:67:0,67,0:0:0:67,0:2396,0:-215.893,-20.169,0,-215.893,-20.169,-215.893	1/2:54:0,36,18:0:0:36,18:1269,648:-155.702,-52.3929,-41.5558,-103.663,0,-98.2443	1/1:128:0,127,1:0:0:127,1:4547,36:-408.95,-38.2308,0,-406.099,-35.0291,-405.798	1/2:33:0,17,16:0:0:17,16:604,574:-96.2595,-47.0461,-41.9286,-49.5698,0,-44.7533	1/2:83:0,50,33:0:0:50,33:1765,1165:-238.382,-94.6864,-79.6349,-144.048,0,-134.114	1/1:83:0,82,0:0:0:82,0:2928,0:-263.474,-24.6845,0,-263.474,-24.6845,-263.474	1/2:103:0,93,10:0:0:93,10:3298,358:-298.176,-29.5043,-1.50847,-269.029,0,-266.019	1/2:173:0,145,28:0:0:145,28:5141,993:-499.049,-80.8948,-37.2455,-418.507,0,-410.079	1/2:56:0,25,31:0:0:25,31:896,1106:-163.358,-90.2806,-82.7549,-73.4346,0,-64.1027	1/1:65:0,65,0:0:0:65,0:2332,0:-209.643,-19.567,0,-209.643,-19.567,-209.643	1/1:128:1,127,0:1:36:127,0:4559,0:-406.587,-34.9336,0,-406.888,-38.2308,-409.826
chr09	19533375	.	TAAAA	TAAGA,TAAG	105161	PASS	AB=0.50458,0.486259;ABP=3.50761,7.48613;AC=132,52;AF=0.717391,0.282609;AN=184;AO=3688,1332;CIGAR=3M1X1M,1M1D2M1X;DP=5060;DPB=4792;DPRA=0,0.922399;EPP=8011.4,2895.41;EPPR=5.18177;GTI=1;LEN=1,4;MEANALT=2,2.45455;MQM=59.9745,59.9377;MQMR=60;NS=92;NUMALT=2;ODDS=0.629193;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=130236,46860;QR=31;RO=1;RPL=0,0;RPP=8011.4,2895.41;RPPR=5.18177;RPR=3688,1332;RUN=1,1;SAF=0,0;SAP=8011.4,2895.41;SAR=3688,1332;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:85:0,83,0:0:0:83,0:2910,0:-261.903,-24.9855,0,-261.903,-24.9855,-261.903	1/1:75:0,74,1:0:0:74,1:2634,36:-236.947,-22.2762,0,-234.009,-18.979,-233.708	1/1:97:0,96,0:0:0:96,0:3402,0:-306.034,-28.8989,0,-306.034,-28.8989,-306.034	1/2:36:0,24,12:0:0:24,12:864,425:-105.477,-34.9749,-27.7502,-70.8578,0,-67.2455	1/2:35:0,21,14:0:0:21,14:756,499:-102.714,-41.026,-34.7044,-62.0456,0,-57.8312	1/2:63:0,40,23:0:0:40,23:1413,810:-181.368,-66.2963,-54.2551,-115.424,0,-108.501	1/2:71:0,41,30:0:0:41,30:1464,1046:-204.778,-85.4162,-73.074,-119.714,0,-110.683	1/2:22:0,10,11:0:0:10,11:360,389:-61.1307,-31.7509,-28.7406,-29.4468,0,-26.1354	1/1:69:0,69,0:0:0:69,0:2443,0:-220.126,-20.7711,0,-220.126,-20.7711,-220.126	1/2:42:0,20,22:0:0:20,22:698,785:-121.12,-64.3518,-58.3312,-57.1208,0,-50.4982	1/1:50:0,50,0:0:0:50,0:1724,0:-155.442,-15.0515,0,-155.442,-15.0515,-155.442	1/2:41:0,14,25:0:0:14,25:496,882:-112.267,-71.8594,-67.645,-40.4447,0,-32.9189	1/2:52:0,18,33:0:0:18,33:636,1167:-146.811,-95.015,-89.5964,-51.79,0,-41.856	1/2:39:0,22,16:0:0:22,16:784,567:-110.091,-46.1848,-39.5621,-63.9016,0,-59.0851	1/2:35:0,18,17:0:0:18,17:627,609:-101.008,-50.0249,-44.6064,-51.3359,0,-46.2183	1/2:31:0,17,13:0:0:17,13:604,466:-87.27,-38.0519,-32.9344,-49.2606,0,-45.3473	1/2:36:0,20,16:0:0:20,16:703,572:-104.215,-46.9972,-40.9766,-57.5729,0,-52.7564	1/1:17:0,17,0:0:0:17,0:593,0:-53.6947,-5.11751,0,-53.6947,-5.11751,-53.6947	1/2:203:1,127,75:1:31:127,75:4478,2586:-571.912,-207.598,-171.856,-362.163,0,-342.074	1/1:30:0,30,0:0:0:30,0:1053,0:-95.0783,-9.0309,0,-95.0783,-9.0309,-95.0783	1/2:82:0,30,52:0:0:30,52:1031,1850:-234.839,-151.125,-142.095,-84.0615,0,-68.4079	1/1:41:0,39,1:0:0:39,1:1387,36:-124.769,-11.7402,0,-121.831,-8.80275,-121.53	1/2:32:0,23,9:0:0:23,9:765,324:-88.6747,-26.7966,-19.8729,-62.2303,0,-59.521	1/1:50:0,49,0:0:0:49,0:1720,0:-154.83,-14.7505,0,-154.83,-14.7505,-154.83	1/2:198:0,90,106:0:0:90,106:3136,3747:-560.228,-305.206,-278.113,-255.056,0,-223.147	1/2:99:0,55,44:0:0:55,44:1946,1574:-287.208,-128.706,-112.149,-158.858,0,-145.613	1/2:20:0,10,10:0:0:10,10:360,347:-57.934,-28.5533,-25.543,-29.734,0,-26.7237	1/2:188:0,110,76:0:0:110,76:3889,2684:-535.38,-218.641,-185.528,-316.805,0,-293.927	1/1:61:0,60,0:0:0:60,0:2112,0:-189.988,-18.0618,0,-189.988,-18.0618,-189.988	1/2:27:0,16,11:0:0:16,11:567,389:-78.2268,-32.0363,-27.2198,-46.5442,0,-43.2329	.:.:.:.:.:.:.:.	1/2:4:0,2,2:0:0:2,2:68,72:-11.7405,-6.23466,-5.6326,-5.85565,0,-5.25359	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:133:0,62,68:0:0:62,68:2202,2386:-373.659,-194.23,-175.566,-179.482,0,-159.012	1/1:118:0,116,0:0:0:116,0:4116,0:-370.266,-34.9195,0,-370.266,-34.9195,-370.266	1/2:36:0,20,15:0:0:20,15:688,530:-99.1321,-43.2607,-37.2401,-55.9625,0,-51.447	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:91:0,91,0:0:0:91,0:3205,0:-288.566,-27.3937,0,-288.566,-27.3937,-288.566	1/1:30:0,30,0:0:0:30,0:1063,0:-95.9808,-9.0309,0,-95.9808,-9.0309,-95.9808	1/2:32:0,15,17:0:0:15,17:532,586:-91.2931,-47.9453,-43.4299,-43.6976,0,-38.5801	1/2:39:0,14,25:0:0:14,25:504,862:-111.495,-70.3662,-66.1518,-41.4837,0,-33.9579	1/2:39:0,15,23:0:0:15,23:528,785:-106.775,-63.7853,-59.2698,-43.0796,0,-36.1559	1/1:70:0,70,0:0:0:70,0:2473,0:-222.816,-21.0721,0,-222.816,-21.0721,-222.816	1/2:79:0,38,40:0:0:38,40:1319,1391:-220.357,-113.137,-101.698,-107.285,0,-95.2439	1/1:118:0,118,0:0:0:118,0:4156,0:-374.225,-35.5215,0,-374.225,-35.5215,-374.225	1/1:50:0,49,0:0:0:49,0:1735,0:-156.162,-14.7505,0,-156.162,-14.7505,-156.162	1/2:60:0,15,45:0:0:15,45:536,1602:-174.626,-130.923,-126.408,-44.0594,0,-30.513	1/1:43:0,43,0:0:0:43,0:1511,0:-136.282,-12.9443,0,-136.282,-12.9443,-136.282	1/2:9:0,4,5:0:0:4,5:129,178:-25.2498,-14.8635,-13.6594,-10.7235,0,-9.21839	1/1:107:0,107,0:0:0:107,0:3773,0:-339.77,-32.2102,0,-339.77,-32.2102,-339.77	1/1:31:0,31,0:0:0:31,0:1082,0:-97.686,-9.33193,0,-97.686,-9.33193,-97.686	1/2:10:0,6,4:0:0:6,4:216,144:-29.734,-12.1095,-10.3033,-17.9843,0,-16.7802	1/1:36:0,35,0:0:0:35,0:1235,0:-111.142,-10.5361,0,-111.142,-10.5361,-111.142	1/2:9:0,5,2:0:0:5,2:180,72:-20.6203,-5.91235,-4.4072,-14.7407,0,-14.1386	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/2:11:0,5,6:0:0:5,6:170,216:-31.7577,-17.9843,-16.4792,-14.1222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chr09	19635345	.	A	G	21129.6	PASS	AB=0.476443;ABP=16.6168;AC=52;AF=0.27957;AN=186;AO=1362;CIGAR=1X;DP=5543;DPB=5543;DPRA=0.981985;EPP=2960.56;EPPR=9077.59;GTI=1;LEN=1;MEANALT=1.01667;MQM=56.6439;MQMR=37.8751;NS=93;NUMALT=1;ODDS=2.09762;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47744;QR=148970;RO=4179;RPL=0;RPP=2960.56;RPPR=9077.59;RPR=1362;RUN=1;SAF=0;SAP=2960.56;SAR=1362;SRF=0;SRP=9077.59;SRR=4179;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1024:0:0:0,-8.72987,-82.2391	0/0:117:117,0:117:4180:0:0:0,-35.2205,-331.6	0/0:84:84,0:84:3011:0:0:0,-25.2865,-242.797	0/0:116:116,0:116:4150:0:0:0,-34.9195,-351.367	0/1:33:10,23:10:352:23:812:-63.4469,0,-20.4312	0/1:23:15,8:15:540:8:268:-17.5187,0,-37.8902	0/1:64:34,30:34:1224:30:1055:-75.3759,0,-83.0981	0/1:110:53,57:53:1885:57:2008:-147.802,0,-124.083	0/1:23:16,7:16:576:7:248:-15.721,0,-41.2642	0/0:96:96,0:96:3456:0:0:0,-28.8989,-291.292	0/1:48:27,21:27:972:21:735:-51.8356,0,-68.5836	0/0:49:49,0:49:1735:0:0:0,-14.7505,-139.545	0/1:48:27,21:27:964:21:735:-51.9118,0,-60.199	0/1:65:34,31:34:1216:31:1104:-80.0371,0,-82.0504	0/1:37:24,13:24:864:13:456:-30.1944,0,-63.233	0/1:34:20,14:20:711:14:496:-34.6739,0,-49.0667	0/1:58:26,32:26:914:32:1113:-82.9498,0,-59.7011	0/1:42:24,18:24:860:18:632:-44.5398,0,-58.9671	0/0:21:21,0:21:748:0:0:0,-6.32163,-61.8724	0/1:106:51,55:51:1828:55:1923:-141.284,0,-123.546	0/0:65:65,0:65:2305:0:0:0,-19.5669,-191.197	0/1:65:29,36:29:1040:36:1272:-94.8971,0,-69.0777	0/0:56:56,0:56:1995:0:0:0,-16.8577,-170.41	0/1:80:46,34:46:1648:34:1172:-81.6267,0,-112.068	0/0:34:34,0:34:1197:0:0:0,-10.235,-98.8318	0/1:169:105,63:105:3749:63:2187:-145.992,0,-268.978	0/1:113:55,58:55:1960:58:2053:-150.91,0,-128.569	0/1:28:12,16:12:428:16:559:-42.1714,0,-27.2424	0/1:160:75,85:75:2665:85:2982:-219.958,0,-177.891	0/0:131:131,0:131:4661:0:0:0,-39.4349,-391.586	0/1:75:35,40:35:1243:40:1376:-101.455,0,-84.0461	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.0662	0/1:10:6,4:6:212:4:135:-9.46878,0,-14.0071	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.5027	0/0:4:3,0:3:108:0:0:0,-0.90309,-8.06637	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.32041	0/1:119:62,57:62:2220:57:1984:-142.862,0,-151.573	0/0:116:116,0:116:4130:0:0:0,-34.9195,-346.336	0/1:39:19,20:19:684:20:711:-52.457,0,-41.8836	.:.:.:.:.:.:.:.	0/0:84:78,6:78:2795:6:216:0,-5.49601,-210.887	0/0:22:22,0:22:769:0:0:0,-6.62266,-63.688	0/1:86:54,32:54:1920:32:1106:-73.89,0,-134.398	0/1:32:22,10:22:779:10:360:-23.0974,0,-56.7302	0/1:34:18,16:18:644:16:541:-38.7329,0,-44.5631	0/0:49:49,0:49:1755:0:0:0,-14.7505,-148.811	0/1:63:31,32:31:1082:32:1133:-82.9909,0,-69.3522	0/0:74:73,1:73:2585:1:36:0,-18.683,-214.016	0/0:51:51,0:51:1805:0:0:0,-15.3525,-152.891	0/1:71:42,29:42:1512:29:1040:-72.3106,0,-104.812	0/0:107:106,1:106:3792:1:21:0,-30.1736,-321.964	0/1:11:2,9:2:68:9:320:-25.8152,0,-2.98644	0/0:63:62,1:62:2196:1:36:0,-15.3676,-175.031	0/0:11:11,0:11:396:0:0:0,-3.31133,-34.1192	0/1:8:2,6:2:72:6:216:-17.3756,0,-4.24689	0/0:61:61,0:61:2184:0:0:0,-18.3628,-180.04	0/1:21:8,13:8:279:13:468:-35.9656,0,-17.8775	0/1:4:2,2:2:72:2:72:-5.62609,0,-5.35941	0/1:15:10,5:10:360:5:172:-11.2937,0,-26.6572	0/1:42:29,13:29:1032:13:453:-28.4382,0,-72.9171	0/1:64:26,38:26:928:38:1302:-98.0657,0,-59.2382	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:151:78,73:78:2785:73:2566:-185.563,0,-190.838	0/0:121:120,1:120:4287:1:36:0,-32.8264,-355.572	0/1:54:37,17:37:1319:17:608:-38.7399,0,-93.4794	0/0:37:37,0:37:1307:0:0:0,-11.1381,-109.245	0/1:106:62,44:62:2205:44:1560:-108.672,0,-156.11	0/0:53:51,2:51:1812:2:72:0,-9.11787,-148.668	0/0:18:18,0:18:631:0:0:0,-5.41854,-52.8685	0/0:48:47,1:47:1679:1:32:0,-11.7948,-131.641	0/1:65:28,37:28:1000:37:1320:-99.248,0,-66.1124	0/1:13:6,7:6:212:7:248:-18.696,0,-15.0202	0/0:61:61,0:61:2175:0:0:0,-18.3628,-171.749	0/1:43:22,21:22:792:21:731:-53.1449,0,-52.5967	0/0:78:78,0:78:2780:0:0:0,-23.4803,-229.789	0/0:138:138,0:138:4927:0:0:0,-41.5421,-416.8	0/1:62:28,34:28:1004:34:1156:-85.4583,0,-64.4203	0/0:98:98,0:98:3498:0:0:0,-29.5009,-281.568	0/1:8:5,3:5:180:3:108:-7.65966,0,-11.7909	0/0:82:81,1:81:2895:1:32:0,-21.4866,-236.915	0/1:69:32,37:32:1148:37:1312:-97.333,0,-71.1396	0/0:111:111,0:111:3948:0:0:0,-33.4143,-328.918	0/0:73:73,0:73:2599:0:0:0,-21.9752,-218.431	0/0:51:51,0:51:1803:0:0:0,-15.3525,-152.027	0/1:45:28,17:28:991:17:592:-40.0328,0,-70.989	0/0:97:95,2:95:3373:2:69:0,-22.6829,-277.778	0/1:31:18,13:18:636:13:452:-31.659,0,-43.8718	0/1:61:31,30:31:1104:30:1060:-77.2188,0,-71.8562	0/0:47:47,0:47:1680:0:0:0,-14.1484,-136.922	0/1:32:17,15:17:612:15:515:-37.0373,0,-41.5615	0/1:48:20,28:20:707:28:1004:-76.1953,0,-44.567	0/1:35:14,21:14:504:21:731:-55.5299,0,-31.1904	0/0:100:100,0:100:3536:0:0:0,-30.103,-298.508	0/0:57:57,0:57:2037:0:0:0,-17.1587,-173.701
chr09	19635353	.	CGGGGGT	TGAGGGC,TGGGGGT	106793	PASS	AB=0.516007,0.471601;ABP=9.47538,23.3608;AC=134,52;AF=0.72043,0.27957;AN=186;AO=4234,1385;CIGAR=1X1M1X3M1X,1X6M;DP=5688;DPB=5688.57;DPRA=61.8152,0.955323;EPP=9197.02,3010.5;EPPR=0;GTI=1;LEN=7,1;MEANALT=2.28261,2.62069;MQM=37.8562,56.8736;MQMR=0;NS=93;NUMALT=2;ODDS=1.09385;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=140,0;PQR=0;PRO=0;QA=146177,49299;QR=0;RO=0;RPL=0,0;RPP=9197.02,3010.5;RPPR=0;RPR=4234,1385;RUN=1,1;SAF=0,0;SAP=9197.02,3010.5;SAR=4234,1385;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1030,0:-83.4627,-9.0309,0,-83.4627,-9.0309,-83.4627	1/1:119:0,117,0:0:0:117,0:4071,0:-327.919,-35.2205,0,-327.919,-35.2205,-327.919	1/1:85:0,83,0:0:0:83,0:2853,0:-233.592,-24.9855,0,-233.592,-24.9855,-233.592	1/1:119:0,118,0:0:0:118,0:4061,0:-346.674,-35.5215,0,-346.674,-35.5215,-346.674	1/2:33:0,10,23:0:0:10,23:349,828:-94.7189,-67.899,-64.8887,-27.16,0,-20.2363	1/2:22:0,15,7:0:0:15,7:522,248:-59.2036,-20.5505,-16.0351,-38.9963,0,-36.8891	1/2:66:0,33,32:0:0:33,32:1153,1110:-177.328,-90.0041,-80.0702,-87.4234,0,-77.7904	1/2:115:0,56,58:0:0:56,58:1916,2061:-312.578,-167.963,-151.105,-144.701,0,-127.241	1/2:24:0,16,8:0:0:16,8:556,288:-65.881,-23.816,-18.9995,-42.4131,0,-40.0048	1/1:97:0,94,0:0:0:94,0:3282,0:-279.661,-28.2968,0,-279.661,-28.2968,-279.661	1/2:48:0,26,20:0:0:26,20:892,707:-126.814,-57.6147,-49.7879,-69.2475,0,-63.2269	1/1:52:0,50,0:0:0:50,0:1697,0:-138.559,-15.0515,0,-138.559,-15.0515,-138.559	1/2:53:0,27,24:0:0:27,24:905,851:-132.799,-69.3203,-61.1925,-63.4804,0,-56.2557	1/2:70:0,35,35:0:0:35,35:1188,1239:-190.726,-101.179,-90.6425,-89.8833,0,-79.3473	1/2:38:0,24,14:0:0:24,14:828,504:-105.597,-41.4374,-34.2127,-64.5086,0,-60.2941	1/2:34:0,20,14:0:0:20,14:683,504:-92.905,-41.4184,-35.3978,-51.8296,0,-47.6151	1/2:60:0,26,34:0:0:26,34:894,1216:-167.302,-99.439,-91.6123,-68.2013,0,-57.9663	1/2:43:0,24,19:0:0:24,19:841,684:-119.064,-56.1433,-48.9186,-63.2654,0,-57.5458	1/1:21:0,21,0:0:0:21,0:716,0:-59.6397,-6.32163,0,-59.6397,-6.32163,-59.6397	1/2:107:0,52,54:0:0:52,54:1823,1940:-297.914,-158.227,-142.574,-139.799,0,-123.544	1/1:65:0,65,0:0:0:65,0:2220,0:-185.719,-19.567,0,-185.719,-19.567,-185.719	1/2:67:0,29,36:0:0:29,36:981,1288:-180.535,-104.971,-96.2414,-75.6186,0,-64.7815	1/1:58:0,57,0:0:0:57,0:1978,0:-168.671,-17.1587,0,-168.671,-17.1587,-168.671	1/2:80:0,47,32:0:0:47,32:1635,1140:-215.313,-92.9683,-78.8199,-122.434,0,-112.801	1/1:35:0,35,0:0:0:35,0:1198,0:-100.174,-10.5361,0,-100.174,-10.5361,-100.174	1/2:173:0,106,65:0:0:106,65:3661,2323:-471.624,-189.106,-157.197,-282.573,0,-263.006	1/2:118:0,57,60:0:0:57,60:1943,2148:-319.879,-175.012,-157.853,-144.847,0,-126.785	1/2:27:0,12,15:0:0:12,15:406,540:-74.5827,-44.3994,-40.787,-30.5171,0,-26.0017	1/2:164:0,76,86:0:0:76,86:2627,3052:-449.73,-248.306,-225.428,-201.511,0,-175.623	1/1:132:0,128,0:0:0:128,0:4420,0:-373.955,-38.5318,0,-373.955,-38.5318,-373.955	1/2:76:0,35,40:0:0:35,40:1226,1427:-210.92,-116.235,-105.699,-94.6766,0,-82.6354	1/1:5:0,5,0:0:0:5,0:166,0:-14.2475,-1.50515,0,-14.2475,-1.50515,-14.2475	1/2:10:0,6,4:0:0:6,4:201,144:-26.3967,-12.1061,-10.2999,-14.6259,0,-13.4218	1/1:1:0,1,0:0:0:1,0:34,0:-3.33613,-0.30103,0,-3.33613,-0.30103,-3.33613	1/1:4:0,4,0:0:0:4,0:140,0:-10.7025,-1.20412,0,-10.7025,-1.20412,-10.7025	1/1:3:0,3,0:0:0:3,0:100,0:-8.87374,-0.90309,0,-8.87374,-0.90309,-8.87374	1/2:124:0,63,60:0:0:63,60:2155,2135:-338.595,-173.906,-154.941,-164.747,0,-146.686	1/1:120:0,120,0:0:0:120,0:4140,0:-349.413,-36.1236,0,-349.413,-36.1236,-349.413	1/2:40:0,19,20:0:0:19,20:651,707:-104.002,-57.6264,-51.9068,-46.4263,0,-40.4057	.:.:.:.:.:.:.:.	1/1:86:0,80,6:0:0:80,6:2771,216:-231.119,-24.0824,0,-213.492,-6.09807,-211.686	1/1:23:0,23,0:0:0:23,0:765,0:-64.4548,-6.92369,0,-64.4548,-6.92369,-64.4548	1/2:88:0,54,32:0:0:54,32:1864,1133:-232.123,-92.2521,-75.9965,-139.9,0,-130.267	1/2:35:0,22,13:0:0:22,13:743,468:-95.6177,-38.5314,-31.9088,-57.4319,0,-53.5185	1/2:36:0,19,17:0:0:19,17:638,604:-98.387,-49.5181,-43.7985,-49.2069,0,-44.0894	1/1:49:0,49,0:0:0:49,0:1717,0:-146.709,-14.7505,0,-146.709,-14.7505,-146.709	1/2:66:0,32,33:0:0:32,33:1095,1168:-175.102,-94.9029,-85.2699,-80.1823,0,-70.2483	1/1:75:0,74,1:0:0:74,1:2575,36:-216.918,-22.2762,0,-213.985,-18.9841,-213.684	1/1:54:0,53,0:0:0:53,0:1826,0:-155.032,-15.9546,0,-155.032,-15.9546,-155.032	1/2:71:0,41,28:0:0:41,28:1448,1008:-191.755,-82.2178,-69.8755,-109.568,0,-101.139	1/1:109:0,107,0:0:0:107,0:3728,0:-320.152,-32.2102,0,-320.152,-32.2102,-320.152	1/2:11:0,2,9:0:0:2,9:68,324:-32.1371,-26.778,-26.1759,-5.69571,0,-2.98644	1/1:64:0,63,1:0:0:63,1:2194,36:-178.983,-18.9649,0,-176.045,-15.6687,-175.744	1/1:12:0,12,0:0:0:12,0:414,0:-35.937,-3.61236,0,-35.937,-3.61236,-35.937	1/2:9:0,3,6:0:0:3,6:104,216:-26.2152,-17.9776,-17.0745,-8.58334,0,-6.77716	1/1:64:0,64,0:0:0:64,0:2208,0:-184.051,-19.2659,0,-184.051,-19.2659,-184.051	1/2:23:0,8,15:0:0:8,15:268,523:-63.5244,-42.7101,-40.3018,-21.1456,0,-16.6302	1/2:4:0,2,2:0:0:2,2:72,72:-11.8372,-6.22815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chr09	19635445	.	T	C	110327	PASS	AB=0.502998;ABP=3.36184;AC=85;AF=0.461957;AN=184;AO=4369;CIGAR=1X;DP=9048;DPB=9048;DPRA=1.71285;EPP=9490.17;EPPR=10141.6;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9366;MQMR=59.8856;NS=92;NUMALT=1;ODDS=1.29431;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156199;QR=167306;RO=4677;RPL=2942;RPP=1143.78;RPPR=1210.98;RPR=1427;RUN=1;SAF=2942;SAP=1143.78;SAR=1427;SRF=3147;SRP=1216.98;SRR=1530;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:26,19:26:913:19:664:-46.5376,0,-68.927	0/1:110:49,60:49:1747:60:2152:-160.923,0,-124.488	0/1:130:69,61:69:2480:61:2192:-158.412,0,-184.319	0/1:378:182,196:182:6492:196:7028:-518.769,0,-470.567	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:172:172,0:172:6140:0:0:0,-51.7772,-552.7	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.623	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:203:90,113:90:3224:113:4056:-304.117,0,-229.273	1/1:56:0,56:0:0:56:1995:-179.823,-16.8577,0	1/1:64:0,64:0:0:64:2289:-206.27,-19.2659,0	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.773	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:59:59,0:59:2112:0:0:0,-17.7608,-189.921	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	1/1:41:1,40:1:36:40:1427:-125.128,-8.74396,0	0/0:162:162,0:162:5816:0:0:0,-48.7669,-523.551	0/1:150:74,76:74:2656:76:2720:-199.889,0,-193.861	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:137:0,137:0:0:137:4892:-440.433,-41.2411,0	0/0:79:75,4:75:2688:4:144:0,-10.4678,-228.851	0/1:41:20,21:20:716:21:754:-55.8446,0,-52.4242	0/0:235:231,4:231:8248:4:144:0,-57.4284,-728.983	1/1:79:0,79:0:0:79:2815:-253.59,-23.7814,0	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	0/0:292:292,0:292:10445:0:0:0,-87.9008,-939.968	0/1:79:41,38:41:1472:38:1360:-98.9192,0,-108.991	0/0:119:119,0:119:4240:0:0:0,-35.8226,-380.468	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	.:.:.:.:.:.:.:.	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:160:160,0:160:5723:0:0:0,-48.1648,-515.172	0/1:116:57,59:57:2039:59:2116:-155.789,0,-148.833	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:135:56,79:56:1999:79:2823:-213.67,0,-139.544	0/1:37:16,21:16:576:21:752:-56.8681,0,-41.0335	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.465	0/1:169:91,78:91:3223:78:2762:-197.945,0,-239.418	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:243:113,130:113:4017:130:4660:-346.398,0,-287.872	0/1:178:103,75:103:3688:75:2676:-187.502,0,-278.515	1/1:119:1,117:1:36:117:4188:-373.503,-32.2831,0	0/1:226:104,122:104:3717:122:4380:-326.339,0,-266.652	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:112:68,44:68:2440:44:1576:-108.416,0,-186.135	1/1:95:0,95:0:0:95:3391:-305.399,-28.5979,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:105:57,48:57:2048:48:1720:-123.477,0,-152.983	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.624	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6887	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:93:92,1:92:3300:1:36:0,-24.3975,-293.62	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:133:133,0:133:4768:0:0:0,-40.037,-429.275	0/1:341:149,192:149:5317:192:6867:-515.445,0,-374.483	1/1:37:2,35:2:72:35:1260:-106.869,-4.30139,0	0/1:156:89,67:89:3184:67:2387:-168.126,0,-239.595	0/0:146:146,0:146:5191:0:0:0,-43.9504,-467.311	1/1:196:0,196:0:0:196:7001:-630.153,-59.0019,0	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/1:95:55,40:55:1968:40:1436:-100.94,0,-148.796	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:78:42,36:42:1491:36:1283:-92.2923,0,-110.999	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	1/1:168:0,168:0:0:168:6000:-539.405,-50.573,0	1/1:372:0,372:0:0:372:13324:-1198.58,-111.983,0	0/0:46:45,1:45:1616:1:36:0,-10.2491,-142.132	0/1:114:70,44:70:2520:44:1580:-108.174,0,-192.734	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:130:63,67:63:2264:67:2390:-175.794,0,-164.888	1/1:43:0,43:0:0:43:1531:-138.082,-12.9443,0	0/1:429:214,215:214:7680:215:7700:-563.892,0,-561.789	1/1:182:0,182:0:0:182:6496:-584.724,-54.7875,0	1/1:126:0,126:0:0:126:4512:-406.248,-37.9298,0	1/1:67:0,67:0:0:67:2389:-215.266,-20.169,0	0/1:234:114,120:114:4092:120:4282:-314.746,0,-298.013	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92171	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:59:0,59:0:0:59:2088:-188.189,-17.7608,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:52:0,52:0:0:52:1844:-166.238,-15.6536,0	0/1:212:93,119:93:3332:119:4247:-317.689,0,-236.251	0/1:209:109,100:109:3908:100:3555:-257.242,0,-288.996
chr09	19646355	.	TTG	TTA	53430.8	PASS	AB=0.371265;ABP=1361.6;AC=89;AF=0.478495;AN=186;AO=3511;CIGAR=2M1X;DP=9538;DPB=9538;DPRA=12.9484;EPP=7317.56;EPPR=4582.39;GTI=12;LEN=1;MEANALT=1.13043;MQM=59.9943;MQMR=59.839;NS=93;NUMALT=1;ODDS=0.540399;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125808;QR=212216;RO=6013;RPL=36;RPP=7317.56;RPPR=4582.39;RPR=3475;RUN=1;SAF=3511;SAP=7627.05;SAR=0;SRF=6013;SRP=13060.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:17,39:17:603:39:1400:-109.442,0,-37.7427	0/1:59:37,22:37:1327:22:777:-52.4896,0,-101.969	0/1:228:99,129:99:3510:129:4640:-349.125,0,-247.451	0/1:278:129,149:129:4577:149:5356:-398.483,0,-328.287	0/1:63:40,23:40:1385:23:815:-54.7059,0,-105.974	0/1:52:37,12:37:1287:12:432:-24.1162,0,-101.02	0/1:101:82,19:82:2915:19:684:-31.4863,0,-232.182	0/1:141:116,25:116:4087:25:900:-38.8758,0,-325.569	0/1:95:70,25:70:2424:25:896:-52.3625,0,-189.806	0/1:52:36,16:36:1269:16:576:-36.5214,0,-98.8568	0/1:47:40,7:40:1413:7:252:-8.88055,0,-113.318	0/1:129:74,55:74:2595:55:1980:-139.642,0,-194.954	0/1:94:70,24:70:2479:24:849:-48.431,0,-195.065	0/1:71:55,16:55:1913:16:572:-30.4403,0,-151.065	0/1:83:66,17:66:2339:17:608:-30.0665,0,-185.772	0/1:74:55,19:55:1934:19:661:-37.5348,0,-152.059	0/1:41:33,8:33:1168:8:288:-13.9252,0,-93.0744	0/0:18:17,1:17:612:1:36:0,-1.82026,-51.8152	0/1:37:19,18:19:674:18:648:-47.5138,0,-49.8473	0/1:129:113,16:113:3953:16:572:-12.9806,0,-317.126	0/1:177:101,76:101:3567:76:2724:-192.121,0,-267.944	0/1:236:202,34:202:7118:34:1224:-39.424,0,-569.61	0/1:136:78,57:78:2774:57:2048:-143.593,0,-208.889	0/1:73:32,41:32:1145:41:1464:-110.081,0,-81.3847	0/1:129:49,80:49:1758:80:2880:-220.603,0,-119.67	0/1:295:192,102:192:6788:102:3630:-238.041,0,-521.643	0/1:239:170,69:170:6020:69:2480:-151.507,0,-469.955	0/1:27:23,4:23:812:4:144:-5.18581,0,-65.272	0/1:397:264,132:264:9325:132:4725:-305.919,0,-719.719	0/1:189:105,84:105:3718:84:3016:-214.776,0,-277.925	0/1:121:91,30:91:3215:30:1072:-60.3678,0,-253.143	0/1:23:20,3:20:716:3:108:-3.15148,0,-57.8396	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:9:7,2:7:233:2:72:-4.12745,0,-18.5854	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:13:9,4:9:307:4:144:-9.40023,0,-24.0457	0/1:241:191,50:191:6734:50:1800:-89.734,0,-533.592	0/1:164:87,76:87:3029:76:2736:-197.055,0,-223.408	0/1:41:36,5:36:1255:5:180:-4.20984,0,-100.906	.:.:.:.:.:.:.:.	0/1:144:84,60:84:2974:60:2152:-150.599,0,-224.541	0/1:41:22,19:22:780:19:680:-49.1869,0,-58.1786	0/1:208:166,42:166:5863:42:1497:-72.4083,0,-465.156	0/1:47:35,12:35:1256:12:432:-25.0728,0,-99.1925	0/1:64:49,15:49:1744:15:540:-29.6706,0,-137.978	0/1:122:58,64:58:2040:64:2292:-169.816,0,-147.14	0/1:65:45,19:45:1589:19:680:-42.0079,0,-123.781	0/1:187:96,91:96:3400:91:3272:-238.406,0,-249.908	0/1:137:60,76:60:2107:76:2709:-202.832,0,-148.676	0/1:96:62,34:62:2216:34:1220:-81.2079,0,-170.806	0/1:126:55,71:55:1933:71:2543:-191.191,0,-136.304	0/1:11:10,1:10:358:1:36:-0.286945,0,-29.2516	0/1:159:80,79:80:2807:79:2832:-207.255,0,-204.976	0/1:77:46,31:46:1626:31:1116:-77.5724,0,-123.434	0/1:11:7,4:7:249:4:140:-9.63325,0,-19.4441	0/1:139:60,79:60:2127:79:2817:-211.925,0,-149.85	0/0:40:37,3:37:1291:3:108:0,-1.96603,-106.412	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:16:13,3:13:454:3:108:-5.25869,0,-36.375	0/1:101:77,24:77:2703:24:860:-47.3178,0,-213.105	0/1:141:110,31:110:3911:31:1110:-57.7657,0,-309.724	0/1:7:6,1:6:204:1:36:-1.49107,0,-16.586	0/1:117:88,29:88:3147:29:1039:-58.6036,0,-248.226	0/1:213:118,95:118:4159:95:3420:-243.893,0,-310.357	0/1:64:46,18:46:1629:18:643:-38.9343,0,-127.632	0/1:93:52,41:52:1806:41:1476:-105.14,0,-134.816	0/1:122:94,28:94:3290:28:1004:-53.9502,0,-259.588	0/1:178:107,71:107:3813:71:2531:-174.457,0,-289.463	0/1:28:13,15:13:452:15:536:-40.146,0,-32.5811	0/1:92:35,57:35:1245:57:2030:-155.27,0,-84.6551	0/1:55:45,10:45:1605:10:360:-16.1877,0,-128.178	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:232:112,119:112:3984:119:4246:-312.548,0,-288.969	0/1:66:48,18:48:1708:18:648:-38.7839,0,-134.133	0/1:176:104,71:104:3691:71:2526:-174.55,0,-278.973	0/1:231:132,98:132:4654:98:3504:-246.05,0,-349.501	0/1:158:116,42:116:4037:42:1512:-88.8119,0,-315.953	0/1:41:28,13:28:992:13:468:-30.1174,0,-77.2514	0/1:7:1,6:1:28:6:216:-17.6833,0,-0.692517	0/1:23:12,11:12:414:11:396:-29.0591,0,-30.6661	0/1:115:87,28:87:3025:28:1008:-56.4179,0,-237.86	0/1:192:77,115:77:2702:115:4128:-313.905,0,-185.617	0/1:99:54,45:54:1869:45:1616:-115.928,0,-138.641	0/1:78:41,37:41:1454:37:1324:-95.9812,0,-107.664	0/1:45:37,7:37:1318:7:248:-9.06021,0,-105.311	0/1:129:67,62:67:2371:62:2200:-159.43,0,-174.808	0/0:34:31,3:31:1089:3:108:0,-0.15985,-88.2417	0/1:100:82,18:82:2865:18:644:-28.1876,0,-225.998	0/1:94:48,46:48:1691:46:1656:-121.032,0,-124.167	0/1:41:29,12:29:1023:12:432:-26.879,0,-80.0393	0/1:116:93,23:93:3277:23:828:-39.9246,0,-260.23	0/1:69:58,11:58:2057:11:392:-14.849,0,-164.624	0/1:101:43,58:43:1528:58:2088:-157.786,0,-107.395	0/1:92:48,43:48:1711:43:1544:-111.5,0,-126.522
chr09	19646363	.	T	G	87320.9	PASS	AB=0.53658;ABP=111.833;AC=94;AF=0.505376;AN=186;AO=5032;CIGAR=1X;DP=9371;DPB=9371;DPRA=0;EPP=10929.9;EPPR=9383.8;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.8158;MQMR=59.9954;NS=93;NUMALT=1;ODDS=104.5;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179691;QR=155180;RO=4336;RPL=5032;RPP=10929.9;RPPR=9383.8;RPR=0;RUN=1;SAF=5032;SAP=10929.9;SAR=0;SRF=4336;SRP=9418.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:37,16:37:1328:16:572:-35.8588,0,-103.868	0/1:60:23,37:23:824:37:1324:-101.396,0,-56.4215	0/1:228:129,99:129:4628:99:3533:-249.518,0,-348.047	0/1:271:146,125:146:5217:125:4464:-320.315,0,-388.088	0/1:63:29,34:29:1044:34:1212:-90.4168,0,-75.3099	0/1:50:25,25:25:892:25:873:-63.8284,0,-65.5482	0/1:102:40,62:40:1425:62:2190:-166.656,0,-97.8404	0/1:140:42,98:42:1512:98:3509:-273.869,0,-94.2304	0/1:91:36,55:36:1292:55:1976:-150.712,0,-89.19	0/1:52:16,36:16:572:36:1292:-100.93,0,-36.1599	0/1:46:16,30:16:576:30:1080:-83.6659,0,-38.3276	0/1:126:54,72:54:1944:72:2566:-193.245,0,-137.306	0/1:91:43,48:43:1544:48:1715:-127.241,0,-111.859	0/1:71:26,45:26:924:45:1620:-124.712,0,-62.1045	0/1:84:41,43:41:1472:43:1530:-112.702,0,-107.49	0/1:73:29,44:29:1040:44:1580:-120.516,0,-71.9392	0/1:40:18,22:18:648:22:783:-58.7443,0,-46.6107	0/1:18:3,15:3:108:15:532:-42.7945,0,-4.65663	0/1:36:18,18:18:633:18:644:-47.452,0,-46.458	0/1:128:47,81:47:1688:81:2877:-220.63,0,-113.675	0/1:174:75,99:75:2688:99:3504:-263.158,0,-189.785	0/1:234:81,153:81:2908:153:5473:-422.159,0,-191.514	0/1:135:58,77:58:2056:77:2755:-207.536,0,-144.67	0/1:73:50,23:50:1796:23:824:-52.5081,0,-139.947	0/1:130:79,50:79:2825:50:1792:-122.368,0,-215.295	0/1:286:141,145:141:5068:145:5186:-380.409,0,-370.168	0/1:233:116,117:116:4172:117:4173:-305.604,0,-305.52	0/1:27:13,14:13:468:14:500:-37.2084,0,-34.3318	0/1:388:193,195:193:6907:195:6945:-508.296,0,-504.897	0/1:185:81,104:81:2900:104:3709:-278.316,0,-205.545	0/1:115:50,65:50:1779:65:2324:-174.796,0,-125.774	0/1:21:3,18:3:108:18:648:-52.3256,0,-3.75354	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:13:6,7:6:216:7:243:-18.2941,0,-15.8771	0/1:238:103,135:103:3640:135:4831:-363.297,0,-256.156	0/1:160:76,84:76:2719:84:2975:-219.808,0,-196.788	0/1:40:18,21:18:648:21:748:-55.5455,0,-46.5519	.:.:.:.:.:.:.:.	0/1:142:60,82:60:2147:82:2932:-221.359,0,-150.751	0/1:42:19,23:19:680:23:811:-60.6618,0,-48.8859	0/1:205:69,136:69:2480:136:4876:-377.263,0,-161.742	0/1:47:29,18:29:1044:18:648:-44.4989,0,-80.1264	0/1:61:28,33:28:993:33:1184:-88.5055,0,-71.3197	0/1:118:62,56:62:2209:56:2012:-145.825,0,-163.552	0/1:65:34,31:34:1206:31:1116:-81.1847,0,-89.2775	0/1:183:89,94:89:3188:94:3360:-247.515,0,-232.055	0/1:132:74,58:74:2660:58:2069:-146.743,0,-199.909	0/1:96:47,49:47:1680:49:1751:-128.975,0,-122.588	0/1:125:70,55:70:2516:55:1942:-137.413,0,-189.063	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:158:79,79:79:2828:79:2815:-206.014,0,-207.196	0/1:76:31,45:31:1112:45:1611:-122.396,0,-77.5131	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:135:75,60:75:2669:60:2160:-154.023,0,-199.815	0/1:40:16,24:16:557:24:841:-63.9652,0,-38.4144	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:17:5,11:5:168:11:377:-29.0831,0,-10.2786	0/1:96:32,64:32:1152:64:2268:-175.478,0,-75.0913	0/1:136:53,83:53:1908:83:2969:-226.488,0,-131.057	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:111:49,62:49:1760:62:2228:-167.36,0,-125.27	0/1:212:95,117:95:3391:117:4182:-312.724,0,-241.587	0/1:61:34,27:34:1208:27:968:-69.0745,0,-90.6633	0/1:92:40,52:40:1432:52:1856:-139.62,0,-101.483	0/1:121:56,65:56:2003:65:2315:-172.179,0,-144.118	0/1:177:71,106:71:2543:106:3795:-288.463,0,-175.838	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:92:58,34:58:2084:34:1220:-82.4074,0,-160.006	0/1:54:29,25:29:1012:25:900:-65.0608,0,-75.1329	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/1:227:118,109:118:4203:109:3911:-283.834,0,-310.116	0/1:65:31,34:31:1116:34:1179:-86.8419,0,-81.1847	0/1:172:71,101:71:2552:101:3620:-274.219,0,-178.153	0/1:231:100,131:100:3596:131:4688:-352.536,0,-254.307	0/1:156:63,93:63:2264:93:3322:-252.23,0,-157.062	0/1:40:14,26:14:489:26:928:-71.7971,0,-32.2977	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/1:114:44,70:44:1580:70:2484:-189.493,0,-108.174	0/1:189:115,74:115:4102:74:2644:-181.306,0,-312.468	0/1:98:44,54:44:1580:54:1921:-143.537,0,-112.991	0/1:78:37,41:37:1313:41:1476:-109.647,0,-94.9894	0/1:45:15,30:15:540:30:1076:-83.5957,0,-35.3902	0/1:126:62,64:62:2216:64:2296:-168.965,0,-161.775	0/1:34:14,20:14:504:20:720:-54.8904,0,-35.4631	0/1:98:36,62:36:1296:62:2206:-168.107,0,-87.443	0/1:94:47,47:47:1692:47:1688:-123.901,0,-124.27	0/1:39:20,19:20:703:19:684:-50.1502,0,-51.8533	0/1:106:47,59:47:1688:59:2105:-157.808,0,-120.298	0/1:67:31,36:31:1116:36:1283:-95.599,0,-80.5827	0/1:101:58,43:58:2067:43:1529:-107.484,0,-155.896	0/1:92:43,49:43:1536:49:1747:-129.814,0,-110.838
chr09	19646377	.	C	T	75902.7	PASS	AB=0.48583;ABP=19.3178;AC=92;AF=0.494624;AN=186;AO=4543;CIGAR=1X;DP=9357;DPB=9357;DPRA=16.9402;EPP=9868.01;EPPR=10443.4;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.7825;MQMR=59.9917;NS=93;NUMALT=1;ODDS=110.52;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161964;QR=169685;RO=4808;RPL=4543;RPP=9868.01;RPPR=10443.4;RPR=0;RUN=1;SAF=4543;SAP=9868.01;SAR=0;SRF=4808;SRP=10443.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:38,16:38:1329:16:572:-35.5578,0,-103.649	0/1:58:21,37:21:748:37:1320:-101.64,0,-50.1856	0/1:231:133,98:133:4723:98:3503:-245.913,0,-355.692	0/1:274:150,124:150:5337:124:4415:-314.934,0,-397.983	0/1:62:40,22:40:1419:22:784:-52.2154,0,-109.343	0/1:51:22,29:22:771:29:1036:-78.1968,0,-54.3578	0/1:103:58,45:58:2080:45:1592:-112.557,0,-156.464	0/1:139:70,69:70:2457:69:2449:-178.811,0,-179.539	0/1:93:45,48:45:1590:48:1709:-126.09,0,-115.393	0/1:52:16,36:16:576:36:1292:-100.93,0,-36.5214	0/1:47:26,20:26:924:20:698:-49.0203,0,-69.3571	0/1:128:55,73:55:1927:73:2599:-195.613,0,-135.175	0/1:91:47,44:47:1663:44:1563:-113.567,0,-122.563	0/1:70:41,29:41:1455:29:1008:-69.9514,0,-110.173	0/1:79:31,48:31:1086:48:1711:-130.494,0,-74.2662	0/1:72:46,26:46:1619:26:936:-62.8853,0,-124.324	0/1:40:15,25:15:528:25:883:-67.737,0,-35.8102	0/1:18:6,12:6:204:12:432:-33.8027,0,-13.2748	0/1:36:17,19:17:608:19:680:-50.6905,0,-44.2149	0/1:126:68,58:68:2408:58:2084:-149.891,0,-179.045	0/1:176:75,101:75:2662:101:3578:-269.127,0,-186.844	0/1:233:140,93:140:4938:93:3332:-229.948,0,-374.427	0/1:133:56,77:56:1977:77:2730:-205.884,0,-138.166	0/1:71:51,20:51:1803:20:711:-42.9425,0,-141.178	0/1:128:80,48:80:2822:48:1689:-113.758,0,-215.689	0/1:287:173,114:173:6124:114:4069:-278.892,0,-464.868	0/1:233:122,111:122:4358:111:3959:-286.353,0,-322.254	0/1:27:12,15:12:420:15:521:-39.0885,0,-30.0062	0/1:384:233,151:233:8212:151:5406:-371.053,0,-623.505	0/1:185:80,104:80:2793:104:3693:-276.817,0,-195.858	0/1:117:53,64:53:1845:64:2283:-170.505,0,-131.105	0/1:22:3,19:3:108:19:675:-54.4497,0,-3.45251	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/1:7:2,5:2:72:5:156:-12.2398,0,-4.72951	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:13:9,4:9:311:4:144:-9.40023,0,-24.4103	0/1:241:124,117:124:4343:117:4200:-305.632,0,-318.499	0/1:161:76,85:76:2680:85:3027:-224.185,0,-192.976	0/1:41:16,25:16:555:25:884:-67.5361,0,-37.9338	.:.:.:.:.:.:.:.	0/1:143:60,83:60:2122:83:2975:-224.93,0,-148.2	0/1:39:18,21:18:640:21:735:-54.7263,0,-46.1891	0/1:203:124,79:124:4371:79:2828:-193.632,0,-332.456	0/1:47:21,26:21:725:26:932:-70.0458,0,-51.4193	0/1:63:34,29:34:1174:29:1035:-74.4982,0,-86.9949	0/1:119:63,56:63:2212:56:1976:-142.284,0,-163.521	0/1:61:26,35:26:920:35:1260:-95.3427,0,-64.7542	0/1:186:92,94:92:3281:94:3359:-246.524,0,-239.517	0/1:132:74,57:74:2629:57:2024:-142.636,0,-197.061	0/1:94:63,31:63:2251:31:1112:-72.0945,0,-174.556	0/1:122:69,53:69:2437:53:1889:-133.55,0,-182.859	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:157:78,79:78:2784:79:2826:-207.126,0,-203.54	0/1:75:29,46:29:1044:46:1650:-126.201,0,-71.6976	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:137:78,59:78:2714:59:2108:-148.744,0,-203.261	0/1:39:15,24:15:523:24:864:-66.3424,0,-35.6583	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:17:9,8:9:300:8:288:-21.1499,0,-22.2046	0/1:100:58,42:58:2022:42:1490:-104.285,0,-152.147	0/1:141:66,75:66:2305:75:2679:-198.898,0,-165.263	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:113:64,49:64:2261:49:1756:-124.298,0,-169.735	0/1:208:95,113:95:3388:113:4047:-301.772,0,-242.522	0/1:59:33,26:33:1156:26:920:-65.3563,0,-86.5829	0/1:92:40,52:40:1431:52:1868:-140.7,0,-101.392	0/1:119:58,61:58:2060:61:2184:-160.981,0,-149.849	0/1:176:73,103:73:2572:103:3676:-277.969,0,-178.748	0/1:26:14,12:14:472:12:404:-28.8549,0,-34.9732	0/1:93:57,35:57:2005:35:1256:-85.2861,0,-152.538	0/1:56:23,33:23:803:33:1172:-88.9252,0,-55.7307	0/1:16:12,4:12:428:4:140:-8.1281,0,-34.0423	0/1:231:117,113:117:4123:113:4052:-295.253,0,-301.623	0/1:63:39,24:39:1369:24:856:-58.3916,0,-104.542	0/1:170:68,102:68:2391:102:3656:-277.689,0,-164.271	0/1:225:99,126:99:3505:126:4507:-338.057,0,-247.93	0/1:155:86,69:86:3043:69:2472:-176.068,0,-227.442	0/1:42:14,28:14:496:28:1004:-78.0326,0,-32.331	0/1:7:6,1:6:216:1:32:-1.0921,0,-17.6833	0/1:22:11,11:11:392:11:383:-28.1806,0,-28.9974	0/1:113:56,57:56:1951:57:2018:-147.864,0,-141.847	0/1:190:114,76:114:4022:76:2732:-188.913,0,-304.975	0/1:97:45,52:45:1596:52:1857:-137.825,0,-114.73	0/1:74:33,41:33:1172:41:1464:-109.771,0,-83.5113	0/1:45:19,26:19:663:26:927:-70.1902,0,-46.4471	0/1:124:59,65:59:2065:65:2284:-168.488,0,-148.792	0/1:34:16,18:16:564:18:636:-47.3317,0,-40.8553	0/1:96:56,40:56:1957:40:1409:-96.6569,0,-147.505	0/1:94:46,48:46:1630:48:1704:-125.34,0,-118.691	0/1:39:22,16:22:780:16:568:-39.7754,0,-58.8485	0/1:110:49,61:49:1735:61:2170:-162.452,0,-123.321	0/1:67:32,35:32:1132:35:1238:-91.5501,0,-82.0196	0/1:98:55,43:55:1921:43:1535:-108.929,0,-143.662	0/1:92:43,49:43:1494:49:1748:-129.9,0,-107.054
chr09	19646489	.	A	G,T	277766	PASS	AB=0.502918,0.496168;ABP=4.06221,4.82447;AC=94,94;AF=0.5,0.5;AN=188;AO=7159,7061;CIGAR=1X,1X;DP=14233;DPB=14233;DPRA=30.5978,21.8525;EPP=15548.6,15335.8;EPPR=16.0391;GTI=2;LEN=1,1;MEANALT=2.05376,2.05376;MQM=59.6689,59.8584;MQMR=60;NS=94;NUMALT=2;ODDS=113.258;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=253802,246045;QR=212;RO=6;RPL=1,1;RPP=15539.9,15327.1;RPPR=16.0391;RPR=7158,7060;RUN=1,1;SAF=1,1;SAP=15539.9,15327.1;SAR=7158,7060;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:45:0,21,24:0:0:21,24:743,832:-128.467,-67.972,-61.6504,-60.8455,0,-53.6208	1/2:293:0,124,169:0:0:124,169:4390,5928:-840.334,-482.76,-445.432,-357.927,0,-307.053	1/2:197:0,76,121:0:0:76,121:2700,4224:-563.888,-343.918,-321.039,-220.323,0,-183.898	1/2:240:0,108,132:0:0:108,132:3785,4591:-681.608,-373.629,-341.118,-308.328,0,-268.593	1/2:94:0,45,49:0:0:45,49:1601,1711:-270.003,-139.524,-125.978,-130.832,0,-116.081	1/2:108:0,54,54:0:0:54,54:1912,1851:-306.344,-150.608,-134.352,-156.085,0,-139.829	1/2:189:0,88,101:0:0:88,101:3119,3535:-542.049,-287.96,-261.469,-254.442,0,-224.038	1/2:331:1,187,143:1:32:187,143:6614,4957:-938.36,-400.151,-346.437,-535.961,0,-495.492	1/2:129:0,73,56:0:0:73,56:2584,1970:-371.173,-160.711,-138.735,-210.815,0,-193.958	1/2:161:0,76,84:0:0:76,84:2654,2914:-452.764,-236.891,-214.013,-215.9,0,-190.614	1/2:65:0,27,38:0:0:27,38:951,1335:-186.434,-109.009,-100.881,-77.7765,0,-66.3374	1/2:86:0,41,45:0:0:41,45:1437,1584:-246.075,-129.304,-116.962,-117.121,0,-103.575	1/2:81:0,47,34:0:0:47,34:1688,1185:-234.393,-96.6942,-82.5458,-138.051,0,-127.816	1/2:119:0,63,56:0:0:63,56:2230,1962:-341.643,-159.996,-141.031,-181.998,0,-165.141	1/2:80:0,41,39:0:0:41,39:1436,1359:-227.705,-110.867,-98.5248,-117.187,0,-105.447	1/2:56:0,34,22:0:0:34,22:1212,765:-161.306,-62.5323,-52.2972,-99.1246,0,-92.5019	1/2:95:0,44,51:0:0:44,51:1559,1759:-270.202,-143.215,-129.97,-127.337,0,-111.984	1/2:89:0,49,40:0:0:49,40:1735,1419:-257.293,-115.964,-101.214,-141.683,0,-129.642	1/2:29:0,18,11:0:0:18,11:644,380:-83.7218,-31.2173,-25.7988,-52.8544,0,-49.5431	1/2:220:0,97,123:0:0:97,123:3425,4312:-630.134,-351.233,-322.033,-279.253,0,-242.226	1/2:188:0,67,121:0:0:67,121:2392,4216:-538.088,-343.076,-322.907,-195.365,0,-158.941	1/2:166:0,79,87:0:0:79,87:2823,3004:-474.53,-244.39,-220.609,-230.491,0,-204.302	1/2:51:0,24,27:0:0:24,27:860,940:-146.925,-76.7857,-69.561,-70.4925,0,-62.3647	1/2:252:0,151,101:0:0:151,101:5364,3528:-723.46,-287.331,-241.875,-436.481,0,-406.077	1/2:90:0,44,46:0:0:44,46:1559,1580:-255.636,-128.64,-115.394,-127.345,0,-113.498	1/2:528:0,295,233:0:0:295,233:10492,8182:-1520.83,-665.86,-577.056,-855.327,0,-785.187	1/2:271:0,154,117:0:0:154,117:5469,4056:-775.268,-329.646,-283.287,-445.972,0,-410.752	1/2:46:0,27,19:0:0:27,19:953,650:-130.696,-53.0994,-44.9715,-77.9427,0,-72.2232	1/2:338:0,181,156:0:0:181,156:6412,5431:-963.436,-441.568,-387.082,-521.859,0,-474.899	1/2:363:0,161,202:0:0:161,202:5696,7066:-1039.08,-575.209,-526.743,-464.219,0,-403.411	1/2:220:0,110,108:0:0:110,108:3899,3795:-626.504,-308.875,-275.761,-317.623,0,-285.111	1/2:10:0,6,4:0:0:6,4:216,136:-28.9914,-11.3714,-9.56524,-17.9677,0,-16.7636	1/2:29:0,13,16:0:0:13,16:464,560:-83.7427,-45.9123,-41.9989,-38.1841,0,-33.3676	1/2:12:0,10,2:0:0:10,2:356,66:-34.7026,-5.66589,-2.65559,-29.3709,0,-28.7689	1/2:16:0,7,9:0:0:7,9:252,316:-46.6354,-26.0696,-23.9624,-20.9217,0,-18.2125	1/2:9:0,6,3:0:0:6,3:212,104:-26.0696,-8.79971,-6.99353,-17.6186,0,-16.7155	1/2:302:0,158,144:0:0:158,144:5613,5019:-865.776,-408.49,-360.927,-457.638,0,-414.289	1/2:572:0,313,259:0:0:313,259:11157,9022:-1642.85,-734.018,-639.795,-909.18,0,-831.213	1/2:55:0,28,27:0:0:28,27:1008,948:-159.759,-77.5068,-69.078,-82.6075,0,-74.4797	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:208:0,88,120:0:0:88,120:3113,4155:-591.336,-338.011,-311.52,-253.676,0,-217.552	1/2:29:0,16,13:0:0:16,13:564,455:-83.2923,-37.3694,-32.5529,-46.2738,0,-42.3604	1/2:222:0,120,102:0:0:120,102:4203,3555:-631.381,-289.428,-253.304,-342.302,0,-311.597	1/2:52:1,27,24:1:36:27,24:955,843:-143.15,-65.666,-60.476,-74.8398,0,-70.5527	1/2:91:0,52,39:0:0:52,39:1868,1367:-263.975,-111.588,-95.934,-152.741,0,-141.001	1/2:139:0,76,63:0:0:76,63:2687,2216:-399.486,-180.741,-157.863,-219.098,0,-200.133	1/2:190:0,95,95:0:0:95,95:3372,3286:-542.063,-267.359,-238.761,-275.055,0,-246.457	1/2:404:0,202,202:0:0:202,202:7158,7062:-1157.96,-574.85,-514.042,-583.464,0,-522.656	1/2:229:0,105,124:0:0:105,124:3700,4338:-654.498,-353.26,-321.652,-301.589,0,-264.261	1/2:242:0,132,110:0:0:132,110:4698,3872:-698.323,-315.561,-275.825,-383.116,0,-350.002	1/2:281:0,158,123:0:0:158,123:5565,4222:-795.846,-342.857,-295.294,-453.336,0,-416.309	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:221:0,86,135:0:0:86,135:3054,4669:-628.531,-379.749,-353.861,-249.133,0,-208.494	1/2:102:0,53,49:0:0:53,49:1895,1693:-292.407,-137.903,-121.949,-154.855,0,-140.105	1/2:27:0,14,13:0:0:14,13: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chr09	19646510	.	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chr09	19647289	.	C	T	65676.7	PASS	AB=0.488082;ABP=12.9998;AC=53;AF=0.281915;AN=188;AO=3968;CIGAR=1X;DP=12015;DPB=12015;DPRA=1.63363;EPP=8619.41;EPPR=17466;GTI=3;LEN=1;MEANALT=1.06557;MQM=54.2623;MQMR=55.2187;NS=94;NUMALT=1;ODDS=2.33343;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141775;QR=288230;RO=8042;RPL=0;RPP=8619.41;RPPR=17466;RPR=3968;RUN=1;SAF=3968;SAP=8619.41;SAR=0;SRF=8042;SRP=17466;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.009	0/0:70:69,0:69:2456:0:0:0,-20.7711,-220.402	0/0:114:114,0:114:4071:0:0:0,-34.3174,-366.057	0/0:181:177,4:177:6341:4:144:0,-41.4587,-556.529	0/1:135:76,59:76:2701:59:2120:-150.119,0,-201.933	0/1:124:58,66:58:2080:66:2364:-175.163,0,-148.731	0/1:178:68,110:68:2444:110:3933:-299.692,0,-166.37	0/1:302:145,157:145:5216:157:5604:-412.206,0,-373.971	0/1:201:158,43:158:5660:43:1521:-76.3745,0,-444.119	0/0:57:57,0:57:2044:0:0:0,-17.1587,-183.999	0/1:130:77,53:77:2760:53:1877:-129.749,0,-209.148	0/0:136:136,0:136:4875:0:0:0,-40.9401,-438.262	0/1:182:110,72:110:3952:72:2584:-176.975,0,-298.715	0/1:148:73,75:73:2608:75:2692:-197.406,0,-189.354	0/1:120:92,28:92:3304:28:1008:-54.7374,0,-261.069	0/1:116:76,40:76:2728:40:1440:-94.685,0,-210.237	0/1:93:38,55:38:1364:55:1967:-148.773,0,-94.6178	0/1:83:36,47:36:1292:47:1692:-127.255,0,-90.3455	0/0:49:49,0:49:1764:0:0:0,-14.7505,-158.008	0/1:280:105,175:105:3760:175:6257:-477.508,0,-253.646	0/0:135:135,0:135:4824:0:0:0,-40.639,-433.6	0/1:156:72,84:72:2568:84:3020:-223.823,0,-183.662	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.675	0/1:172:87,85:87:3124:85:3052:-219.982,0,-229.103	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.011	0/1:344:141,203:141:5056:203:7208:-542.424,0,-349.828	0/1:401:267,134:267:9549:134:4804:-311.168,0,-737.109	0/1:56:37,18:37:1332:18:648:-41.6214,0,-102.754	0/1:426:199,227:199:7120:227:8087:-596.57,0,-511.072	0/0:73:73,0:73:2624:0:0:0,-21.9752,-235.981	0/1:280:115,165:115:4096:165:5901:-445.366,0,-283.509	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.0878	0/1:16:11,5:11:392:5:180:-11.7022,0,-30.6432	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7737	0/1:14:5,9:5:180:9:324:-25.1975,0,-10.8103	0/1:45:33,12:33:1179:12:432:-25.5772,0,-91.4864	0/1:314:148,166:148:5291:166:5937:-436.44,0,-379.184	0/0:97:97,0:97:3488:0:0:0,-29.1999,-313.708	0/1:125:67,58:67:2408:58:2080:-148.922,0,-178.366	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83188	0/0:84:81,3:81:2912:3:108:0,-15.2338,-251.837	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.713	0/1:330:182,147:182:6524:147:5269:-374.088,0,-485.538	0/1:131:65,66:65:2340:66:2368:-173.562,0,-171.189	0/1:145:78,67:78:2796:67:2408:-172.249,0,-208.084	0/0:97:97,0:97:3480:0:0:0,-29.1999,-312.443	0/1:253:142,111:142:5092:111:3961:-279.14,0,-379.026	0/0:127:127,0:127:4539:0:0:0,-38.2308,-407.308	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.057	0/1:184:64,120:64:2296:120:4288:-328.611,0,-151.396	0/0:74:74,0:74:2656:0:0:0,-22.2762,-238.939	0/1:17:9,8:9:324:8:288:-21.0775,0,-24.3682	0/0:203:203,0:203:7280:0:0:0,-61.1091,-653.527	0/0:47:47,0:47:1688:0:0:0,-14.1484,-151.952	0/1:21:6,15:6:216:15:540:-42.5265,0,-12.9698	0/0:127:127,0:127:4548:0:0:0,-38.2308,-408.892	0/1:76:49,27:49:1756:27:972:-64.4814,0,-135.382	0/1:7:4,3:4:144:3:104:-7.59034,0,-11.1757	0/1:22:5,17:5:180:17:600:-47.4581,0,-9.82021	0/1:150:77,73:77:2764:73:2624:-189.668,0,-202.964	0/1:197:108,89:108:3884:89:3191:-225.501,0,-289.991	0/1:13:8,5:8:288:5:180:-12.6157,0,-22.3369	0/1:190:86,104:86:3096:104:3709:-276.252,0,-220.6	0/0:163:160,3:160:5736:3:108:0,-39.0868,-505.734	0/1:127:53,74:53:1893:74:2637:-198.84,0,-132.098	0/0:81:79,1:79:2828:1:36:0,-20.8356,-250.755	0/1:302:123,179:123:4412:179:6324:-476.778,0,-305.345	0/0:106:105,1:105:3780:1:36:0,-28.6102,-336.564	0/0:67:67,0:67:2399:0:0:0,-20.169,-215.723	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.292	0/1:141:66,74:66:2372:74:2630:-193.808,0,-170.066	0/1:31:13,18:13:468:18:640:-48.5084,0,-32.8966	0/0:121:121,0:121:4348:0:0:0,-36.4246,-390.829	0/1:104:70,34:70:2504:34:1216:-78.3197,0,-192.368	0/0:145:145,0:145:5180:0:0:0,-43.6493,-464.193	0/0:124:124,0:124:4433:0:0:0,-37.3277,-398.612	0/1:250:113,137:113:4040:137:4894:-362.267,0,-284.941	0/0:54:54,0:54:1931:0:0:0,-16.2556,-173.886	0/1:18:11,7:11:396:7:237:-16.2381,0,-29.5733	0/0:89:88,1:88:3148:1:36:0,-23.1938,-279.182	0/1:172:78,94:78:2804:94:3349:-248.926,0,-198.209	0/0:156:156,0:156:5600:0:0:0,-46.9607,-503.387	0/0:56:55,1:55:1976:1:36:0,-13.9549,-174.873	0/0:106:106,0:106:3816:0:0:0,-31.9092,-343.188	0/1:98:49,49:49:1760:49:1752:-128.155,0,-129.072	0/0:169:167,2:167:5982:2:72:0,-44.049,-530.961	0/1:46:21,25:21:756:25:900:-67.2134,0,-53.5666	0/1:127:71,56:71:2552:56:2001:-141.52,0,-190.177	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.014	0/1:135:85,50:85:3030:50:1796:-120.932,0,-231.415	0/1:196:117,79:117:4188:79:2821:-194.059,0,-316.648	0/1:173:95,78:95:3420:78:2768:-195.053,0,-255.117	0/0:113:113,0:113:4036:0:0:0,-34.0164,-361.498	0/0:135:135,0:135:4856:0:0:0,-40.639,-436.409
chr09	19673699	.	C	T	93666.9	PASS	AB=0.521833;ABP=16.3801;AC=135;AF=0.718085;AN=188;AO=4499;CIGAR=1X;DP=6067;DPB=6067;DPRA=5.91984;EPP=9772.46;EPPR=3397.03;GTI=5;LEN=1;MEANALT=1.01075;MQM=59.5477;MQMR=59.9834;NS=94;NUMALT=1;ODDS=0.130573;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161124;QR=56046;RO=1567;RPL=0;RPP=9772.46;RPPR=3405.71;RPR=4499;RUN=1;SAF=4499;SAP=9772.46;SAR=0;SRF=1566;SRP=3397.03;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1296:-116.919,-10.8371,0	1/1:52:0,52:0:0:52:1842:-166.049,-15.6536,0	1/1:139:0,139:0:0:139:4949:-444.818,-41.8432,0	1/1:66:3,63:3:108:63:2256:-193.221,-9.79281,0	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/1:30:10,20:10:356:20:720:-56.0897,0,-23.3503	0/1:54:31,23:31:1108:23:828:-58.5838,0,-83.7754	0/1:86:26,60:26:932:60:2152:-167.84,0,-58.3103	0/1:77:39,38:39:1392:38:1364:-99.8138,0,-102.4	1/1:62:0,62:0:0:62:2217:-199.788,-18.6639,0	0/1:88:40,48:40:1432:48:1716:-128.228,0,-102.687	1/1:103:1,102:1:36:102:3653:-324.389,-27.4078,0	0/1:72:38,34:38:1360:34:1213:-87.7941,0,-101.026	0/1:96:46,50:46:1644:50:1796:-133.01,0,-119.35	0/1:60:27,33:27:960:33:1180:-88.4439,0,-68.6545	0/1:85:40,45:40:1428:45:1616:-120.133,0,-103.23	0/1:42:22,20:22:788:20:720:-52.4773,0,-58.6015	0/1:45:17,28:17:612:28:1004:-77.1132,0,-41.8671	1/1:61:0,61:0:0:61:2149:-193.611,-18.3628,0	0/1:90:39,51:39:1400:51:1828:-136.959,0,-99.2065	1/1:88:0,88:0:0:88:3144:-283.147,-26.4906,0	0/1:25:19,6:19:680:6:216:-12.2648,0,-54.0034	1/1:41:1,40:1:36:40:1412:-123.743,-8.74396,0	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	1/1:39:0,39:0:0:39:1400:-126.285,-11.7402,0	0/1:121:61,60:61:2188:60:2148:-157.143,0,-160.761	0/1:184:103,80:103:3696:80:2860:-202.299,0,-277.542	0/1:27:16,11:16:568:11:396:-27.8549,0,-43.3241	0/1:158:106,52:106:3788:52:1856:-119.754,0,-293.556	1/1:70:0,70:0:0:70:2508:-225.886,-21.0721,0	0/1:66:25,41:25:896:41:1476:-113.264,0,-61.0908	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:1,5:1:36:5:180:-14.7376,0,-1.79209	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:149:69,80:69:2459:80:2880:-214.576,0,-176.711	1/1:34:0,34:0:0:34:1216:-109.745,-10.235,0	0/1:70:43,27:43:1544:27:964:-65.9802,0,-118.181	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:47:1,46:1:36:46:1652:-145.368,-10.5501,0	1/1:51:0,51:0:0:51:1832:-164.36,-15.3525,0	0/1:106:38,68:38:1368:68:2423:-186.407,0,-91.5116	0/1:44:15,29:15:540:29:1040:-80.6634,0,-35.6912	0/1:40:16,24:16:576:24:856:-64.9995,0,-40.1338	1/1:89:0,89:0:0:89:3192:-287.5,-26.7917,0	0/1:67:21,46:21:752:46:1644:-128.044,0,-47.8372	1/1:64:1,63:1:36:63:2260:-199.963,-15.6676,0	1/1:43:0,43:0:0:43:1544:-139.231,-12.9443,0	0/1:99:37,62:37:1315:62:2209:-169.227,0,-88.8491	1/1:47:0,47:0:0:47:1680:-151.485,-14.1484,0	0/1:16:8,8:8:284:8:284:-21.0821,0,-21.0869	1/1:84:0,84:0:0:84:3019:-271.9,-25.2865,0	1/1:57:0,57:0:0:57:2052:-184.882,-17.1587,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:78:1,77:1:36:77:2764:-245.158,-19.8821,0	0/1:6:1,5:1:36:5:180:-14.7435,0,-1.79209	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:22:13,9:13:468:9:315:-22.0646,0,-35.837	0/1:79:46,33:46:1652:33:1180:-82.7221,0,-125.187	0/1:106:49,57:49:1736:57:2052:-153.035,0,-124.615	0/1:5:1,4:1:36:4:139:-11.346,0,-2.09312	0/1:72:34,38:34:1220:38:1364:-101.36,0,-88.4326	1/1:113:0,113:0:0:113:4060:-365.483,-34.0164,0	0/1:67:38,29:38:1356:29:1040:-73.7407,0,-102.171	1/1:20:0,20:0:0:20:716:-64.763,-6.0206,0	0/1:65:27,38:27:968:38:1360:-103.129,0,-67.8006	1/1:128:0,128:0:0:128:4589:-413.162,-38.5318,0	1/1:80:1,79:1:36:79:2844:-252.395,-20.4841,0	1/1:34:1,33:1:36:33:1188:-103.63,-6.63675,0	0/1:48:16,32:16:572:32:1148:-89.1771,0,-37.364	0/1:27:15,12:15:532:12:428:-30.7286,0,-40.0853	1/1:66:0,66:0:0:66:2364:-212.973,-19.868,0	0/1:94:44,50:44:1564:50:1796:-133.556,0,-112.755	1/1:95:0,95:0:0:95:3404:-306.401,-28.5979,0	1/1:109:0,109:0:0:109:3912:-352.248,-32.8123,0	0/1:60:31,29:31:1100:29:1040:-75.8353,0,-81.2485	1/1:95:0,95:0:0:95:3408:-306.84,-28.5979,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:87:1,86:1:36:86:3081:-273.896,-22.5913,0	0/1:104:38,66:38:1352:66:2345:-179.789,0,-90.6732	1/1:109:0,109:0:0:109:3912:-352.266,-32.8123,0	1/1:65:0,65:0:0:65:2332:-210.13,-19.567,0	1/1:94:0,94:0:0:94:3372:-303.679,-28.2968,0	0/1:37:13,24:13:468:24:851:-65.6615,0,-31.3215	1/1:129:2,127:2:72:127:4568:-404.428,-31.9961,0	0/1:26:13,13:13:464:13:468:-34.6329,0,-34.2707	0/1:58:30,28:30:1076:28:1008:-73.1795,0,-79.6931	1/1:76:0,76:0:0:76:2711:-244.214,-22.8783,0	0/1:80:43,37:43:1544:37:1317:-94.7474,0,-115.171	0/1:138:64,74:64:2288:74:2656:-197.724,0,-164.638	0/1:44:32,12:32:1136:12:428:-25.6116,0,-89.3036	1/1:83:0,83:0:0:83:2946:-265.292,-24.9855,0	1/1:85:0,85:0:0:85:3052:-274.77,-25.5876,0
chr09	19673753	.	G	A	252019	PASS	AB=0.509257;ABP=8.07558;AC=135;AF=0.718085;AN=188;AO=9405;CIGAR=1X;DP=12774;DPB=12774;DPRA=0;EPP=20382.3;EPPR=7275.31;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.5469;MQMR=59.9733;NS=94;NUMALT=1;ODDS=1.47288;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=335927;QR=119759;RO=3365;RPL=4478;RPP=49.5569;RPPR=39.2568;RPR=4927;RUN=1;SAF=4473;SAP=51.6534;SAR=4932;SRF=1560;SRP=41.7451;SRR=1805;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,61:0:0:61:2176:-195.711,-18.3628,0	1/1:148:0,148:0:0:148:5308:-477.823,-44.5524,0	1/1:215:0,215:0:0:215:7692:-691.189,-64.7215,0	1/1:206:2,203:2:72:203:7260:-646.537,-55.2343,0	0/1:55:23,32:23:824:32:1148:-87.0558,0,-57.9267	0/1:67:20,47:20:720:47:1677:-130.172,0,-44.9598	0/1:101:60,41:60:2152:41:1472:-102.363,0,-163.543	0/1:227:81,145:81:2897:145:5171:-396.83,0,-192.69	0/1:108:49,59:49:1707:59:2088:-155.585,0,-121.401	1/1:137:0,137:0:0:137:4920:-442.903,-41.2411,0	0/1:131:64,67:64:2280:67:2384:-175.34,0,-166.027	1/1:165:0,165:0:0:165:5862:-527.008,-49.67,0	0/1:144:74,70:74:2637:70:2495:-181.438,0,-194.227	0/1:159:74,85:74:2640:85:3022:-224.079,0,-189.984	0/1:123:55,68:55:1976:68:2444:-183.183,0,-141.088	0/1:115:48,67:48:1712:67:2404:-181.944,0,-119.747	0/1:121:64,57:64:2276:57:2024:-145.992,0,-168.675	0/1:141:59,82:59:2086:82:2944:-222.711,0,-145.561	1/1:93:0,93:0:0:93:3289:-296.073,-27.9958,0	0/1:185:100,85:100:3547:85:3022:-215.399,0,-263.748	1/1:187:0,187:0:0:187:6687:-601.581,-56.2926,0	0/1:67:54,13:54:1925:13:464:-21.9281,0,-153.356	1/1:78:1,77:1:36:77:2753:-244.403,-19.8821,0	0/1:140:55,85:55:1948:85:3026:-230.4,0,-133.449	1/1:44:0,44:0:0:44:1576:-142.118,-13.2453,0	0/1:347:172,175:172:6108:175:6261:-459.097,0,-445.365	0/1:290:166,124:166:5865:124:4434:-311.843,0,-440.665	0/1:62:34,28:34:1216:28:999:-71.555,0,-91.0827	0/1:236:156,80:156:5583:80:2864:-186.923,0,-431.545	1/1:160:0,160:0:0:160:5721:-514.623,-48.1648,0	0/1:169:63,106:63:2252:106:3777:-289.243,0,-152.069	1/1:6:0,6:0:0:6:216:-19.7858,-1.80618,0	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	1/1:10:0,10:0:0:10:360:-31.9598,-3.0103,0	0/1:11:5,6:5:180:6:216:-16.4709,0,-13.2407	0/1:18:12,6:12:424:6:216:-14.372,0,-33.0779	0/1:339:161,178:161:5719:178:6357:-470.119,0,-412.78	1/1:128:0,128:0:0:128:4573:-411.691,-38.5318,0	0/1:120:64,56:64:2285:56:2012:-144.989,0,-169.786	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:144:3,141:3:104:141:5057:-445.543,-33.6455,0	1/1:85:0,85:0:0:85:3045:-274.246,-25.5876,0	0/1:167:69,98:69:2444:98:3477:-262.83,0,-169.941	0/1:119:47,72:47:1665:72:2580:-196.613,0,-114.311	0/1:107:48,59:48:1679:59:2110:-157.263,0,-119.183	1/1:150:1,149:1:36:149:5281:-471.814,-41.5562,0	0/1:161:81,80:81:2887:80:2854:-208.561,0,-211.601	1/1:259:1,258:1:36:258:9211:-825.151,-74.3685,0	1/1:109:0,109:0:0:109:3914:-352.408,-32.8123,0	0/1:240:117,123:117:4179:123:4411:-324.827,0,-303.815	1/1:127:0,127:0:0:127:4539:-408.672,-38.2308,0	0/1:21:10,11:10:360:11:392:-29.2937,0,-26.4227	1/1:162:0,162:0:0:162:5795:-520.841,-48.7669,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	1/1:162:3,159:3:108:159:5690:-501.951,-38.6917,0	0/1:23:3,20:3:108:20:705:-56.8003,0,-3.15148	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:35:24,11:24:864:11:392:-25.084,0,-67.5465	0/1:121:69,52:69:2446:52:1848:-130.162,0,-183.97	0/1:207:95,112:95:3374:112:4016:-299.305,0,-241.555	0/1:9:3,6:3:108:6:216:-17.0797,0,-7.3659	0/1:232:112,120:112:4003:120:4286:-316.041,0,-290.618	1/1:289:2,287:2:72:287:10264:-916.721,-80.1609,0	0/1:135:83,52:83:2976:52:1853:-126.4,0,-227.433	1/1:81:0,81:0:0:81:2893:-260.586,-24.3834,0	0/1:208:98,110:98:3500:110:3944:-292.528,0,-252.597	1/1:191:0,191:0:0:191:6824:-614.208,-57.4967,0	1/1:104:2,102:2:72:102:3645:-321.207,-24.4704,0	1/1:95:0,95:0:0:95:3404:-306.542,-28.5979,0	0/1:144:69,75:69:2450:75:2648:-195.217,0,-177.406	0/1:41:26,15:26:918:15:540:-36.592,0,-70.593	1/1:93:0,93:0:0:93:3322:-298.82,-27.9958,0	0/1:160:80,80:80:2859:80:2868:-210.109,0,-209.113	1/1:224:0,223:0:0:223:7985:-718.146,-67.1297,0	1/1:239:2,237:2:72:237:8466:-755.068,-65.1094,0	0/1:155:74,81:74:2630:81:2885:-213.196,0,-190.287	1/1:211:0,211:0:0:211:7488:-673.661,-63.5173,0	0/1:12:6,6:6:216:6:216:-16.1772,0,-16.1782	1/1:173:4,169:4:144:169:6036:-529.988,-38.7646,0	0/1:188:84,104:84:3020:104:3723:-278.457,0,-215.436	1/1:234:1,233:1:36:233:8362:-748.846,-66.8427,0	1/1:161:0,161:0:0:161:5755:-518.047,-48.4658,0	1/1:155:0,155:0:0:155:5531:-497.886,-46.6597,0	0/1:153:59,94:59:2090:94:3359:-256.355,0,-142.311	1/1:297:3,294:3:104:294:10434:-929.191,-79.7031,0	0/1:78:38,40:38:1360:40:1428:-105.329,0,-99.2203	0/1:136:68,68:68:2418:68:2444:-178.878,0,-176.935	1/1:150:0,150:0:0:150:5392:-485.368,-45.1545,0	0/1:131:73,58:73:2569:58:2070:-147.126,0,-192.025	0/1:187:97,90:97:3435:90:3212:-232.981,0,-253.071	0/1:127:82,45:82:2918:45:1605:-106.5,0,-224.624	1/1:143:1,142:1:36:142:5060:-451.859,-39.449,0	1/1:215:0,215:0:0:215:7618:-685.581,-64.7215,0
chr09	19723095	.	GAT	TAT,TAA	318569	PASS	AB=0.484932,0.512915;ABP=15.8361,12.4334;AC=136,52;AF=0.723404,0.276596;AN=188;AO=8582,3357;CIGAR=1X2M,1X1M1X;DP=11960;DPB=11960;DPRA=0,1.13089;EPP=18069.7,6966.32;EPPR=5.18177;GTI=0;LEN=1,3;MEANALT=1.85106,2.22951;MQM=57.3412,50.72;MQMR=60;NS=94;NUMALT=2;ODDS=1.16194;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=302162,116362;QR=36;RO=1;RPL=3504,1518;RPP=629.877,69.6623;RPPR=5.18177;RPR=5078,1839;RUN=1,1;SAF=3568,1556;SAP=532.067,41.8374;SAR=5014,1801;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:77:0,77,0:0:0:77,0:2739,0:-246.498,-23.1793,0,-246.498,-23.1793,-246.498	1/1:160:0,160,0:0:0:160,0:5614,0:-503.419,-48.1648,0,-503.419,-48.1648,-503.419	1/1:181:0,181,0:0:0:181,0:6420,0:-576.998,-54.4864,0,-576.998,-54.4864,-576.998	1/1:221:0,221,0:0:0:221,0:7813,0:-703.043,-66.5276,0,-703.043,-66.5276,-703.043	1/2:87:0,35,52:0:0:35,52:1235,1805:-244.564,-144.045,-133.509,-100.867,0,-85.2132	1/2:60:0,28,32:0:0:28,32:983,1088:-163.842,-84.0182,-75.5893,-80.1614,0,-70.5284	1/2:147:0,63,83:0:0:63,83:2204,2822:-406.993,-227.757,-208.792,-179.31,0,-154.324	1/2:163:0,92,71:0:0:92,71:3238,2436:-454.207,-191.6,-163.905,-262.948,0,-241.575	1/2:194:0,107,86:0:0:107,86:3784,2951:-536.352,-228.938,-196.728,-307.394,0,-281.506	1/1:68:0,68,0:0:0:68,0:2362,0:-212.686,-20.47,0,-212.686,-20.47,-212.686	1/2:138:0,62,76:0:0:62,76:2186,2609:-386.804,-209.124,-190.461,-178.026,0,-155.147	1/1:177:0,177,0:0:0:177,0:6189,0:-556.263,-53.2823,0,-556.263,-53.2823,-556.263	1/2:201:0,101,99:0:0:101,99:3594,3476:-562.985,-270.97,-240.566,-292.022,0,-262.22	1/2:172:0,84,88:0:0:84,88:2956,3017:-479.212,-238.758,-213.471,-240.797,0,-214.307	1/2:157:0,75,82:0:0:75,82:2637,2833:-440.233,-225.901,-203.324,-214.677,0,-189.993	1/2:134:0,62,72:0:0:62,72:2194,2511:-377.87,-199.378,-180.714,-178.84,0,-157.166	1/2:127:0,58,69:0:0:58,69:2051,2409:-352.88,-186.727,-169.267,-166.497,0,-145.726	1/2:131:0,56,75:0:0:56,75:1952,2635:-361.077,-203.103,-186.245,-158.315,0,-135.738	1/1:94:0,94,0:0:0:94,0:3310,0:-297.657,-28.2968,0,-297.657,-28.2968,-297.657	1/2:111:0,67,43:0:0:67,43:2362,1444:-308.889,-116.586,-96.4167,-192.431,0,-179.486	1/1:193:0,193,0:0:0:193,0:6797,0:-610.878,-58.0988,0,-610.878,-58.0988,-610.878	1/2:57:0,14,43:0:0:14,43:492,1454:-158.139,-118.089,-113.875,-40.3979,0,-27.4536	1/1:115:0,115,0:0:0:115,0:4047,0:-364.286,-34.6185,0,-364.286,-34.6185,-364.286	1/2:117:0,62,55:0:0:62,55:2182,1940:-329.76,-152.713,-134.049,-177.393,0,-160.837	1/1:149:0,148,0:0:0:148,0:5243,0:-471.708,-44.5524,0,-471.708,-44.5524,-471.708	1/2:262:0,125,137:0:0:125,137:4390,4747:-739.971,-383.001,-345.372,-357.317,0,-316.076	1/2:272:0,126,146:0:0:126,146:4443,5022:-766.471,-404.918,-366.988,-361.9,0,-317.95	1/2:72:0,32,40:0:0:32,40:1133,1406:-203.952,-111.859,-102.226,-92.4424,0,-80.4012	1/2:252:1,116,133:1:36:116,133:4102,4542:-697.978,-364.231,-332.249,-331.124,0,-294.024	1/1:110:0,109,1:0:0:109,1:3866,27:-347.386,-32.8123,0,-345.277,-30.4345,-344.976	1/2:113:0,56,56:0:0:56,56:1956,1952:-314.803,-156.096,-139.239,-158.781,0,-141.923	1/1:8:0,8,0:0:0:8,0:271,0:-24.7049,-2.40824,0,-24.7049,-2.40824,-24.7049	1/2:20:0,8,12:0:0:8,12:280,403:-54.9711,-32.1943,-29.7861,-23.118,0,-19.5057	1/1:3:0,3,0:0:0:3,0:104,0:-9.69942,-0.90309,0,-9.69942,-0.90309,-9.69942	1/2:4:0,1,3:0:0:1,3:36,101:-11.4637,-8.52044,-8.21941,-3.29724,0,-2.39415	1/1:5:0,5,0:0:0:5,0:180,0:-16.4106,-1.50515,0,-16.4106,-1.50515,-16.4106	1/2:380:0,197,181:0:0:197,181:6940,6334:-1072.23,-507.807,-448.504,-564.414,0,-509.928	1/1:82:0,82,0:0:0:82,0:2859,0:-257.139,-24.6845,0,-257.139,-24.6845,-257.139	1/2:132:0,68,63:0:0:68,63:2393,2185:-361.657,-167.351,-146.881,-194.364,0,-175.399	1/1:9:0,9,0:0:0:9,0:324,0:-29.4956,-2.70927,0,-29.4956,-2.70927,-29.4956	1/1:118:0,117,1:0:0:117,1:4137,36:-371.465,-35.2205,0,-368.657,-32.067,-368.356	1/1:75:0,75,0:0:0:75,0:2645,0:-238.014,-22.5773,0,-238.014,-22.5773,-238.014	1/2:192:0,85,107:0:0:85,107:2989,3707:-538.746,-295.861,-270.273,-243.232,0,-211.022	1/2:130:0,60,70:0:0:60,70:2124,2456:-369.366,-196.395,-178.334,-173.32,0,-152.248	1/2:123:0,56,67:0:0:56,67:1981,2353:-348.73,-187.637,-170.78,-161.442,0,-141.273	1/1:100:0,100,0:0:0:100,0:3521,0:-317.019,-30.103,0,-317.019,-30.103,-317.019	1/2:90:0,42,48:0:0:42,48:1487,1658:-252.413,-131.643,-119,-121.116,0,-106.666	1/1:134:0,134,0:0:0:134,0:4739,0:-425.826,-40.338,0,-425.826,-40.338,-425.826	1/1:67:0,67,0:0:0:67,0:2338,0:-210.628,-20.169,0,-210.628,-20.169,-210.628	1/2:145:0,89,56:0:0:89,56:3143,1968:-413.824,-158.122,-131.33,-256.051,0,-239.194	1/1:91:0,91,0:0:0:91,0:3211,0:-289.152,-27.3937,0,-289.152,-27.3937,-289.152	1/2:8:0,7,1:0:0:7,1:248,36:-23.4838,-3.29724,-1.19003,-20.5456,0,-20.2446	1/1:133:0,132,1:0:0:132,1:4593,27:-412.157,-39.736,0,-410.029,-37.3372,-409.728	1/1:69:0,69,0:0:0:69,0:2444,0:-220.119,-20.7711,0,-220.119,-20.7711,-220.119	1/2:10:0,6,4:0:0:6,4:212,142:-27.8129,-10.5425,-8.73633,-17.602,0,-16.3979	1/1:180:0,179,0:0:0:179,0:6226,0:-559.588,-53.8844,0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chr09	19788612	.	CTCG	TTCT,CTCT	127081	PASS	AB=0.491972,0.504817;ABP=4.75361,3.63789;AC=136,52;AF=0.723404,0.276596;AN=188;AO=4412,1586;CIGAR=1X2M1X,3M1X;DP=6017;DPB=6019.5;DPRA=0,1.10327;EPP=9566.18,3438.29;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.82979,2.23729;MQM=59.9898,59.9987;MQMR=0;NS=94;NUMALT=2;ODDS=2.3221;PAIRED=0,0;PAIREDR=0;PAO=5,5;PQA=176,176;PQR=0;PRO=0;QA=155867,56688;QR=0;RO=0;RPL=1,1;RPP=9574.86,3438.29;RPPR=0;RPR=4411,1585;RUN=1,1;SAF=4411,1586;SAP=9574.86,3446.97;SAR=1,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41,0:0:0:41,0:1449,0:-130.705,-12.3422,0,-130.705,-12.3422,-130.705	1/1:73:0,72,0:0:0:72,0:2528,0:-227.519,-21.6742,0,-227.519,-21.6742,-227.519	1/1:120:0,120,0:0:0:120,0:4193,0:-377.552,-36.1236,0,-377.552,-36.1236,-377.552	1/1:110:0,110,0:0:0:110,0:3867,0:-348.228,-33.1133,0,-348.228,-33.1133,-348.228	1/2:29:0,6,23:0:0:6,23:216,828:-85.5449,-67.9204,-66.1142,-17.9843,0,-11.0606	1/2:37:0,25,12:0:0:25,12:892,428:-107.964,-35.2464,-27.7207,-73.0742,0,-69.4619	1/2:77:0,40,36:0:0:40,36:1421,1269:-219.107,-103.315,-91.2737,-115.786,0,-104.949	1/2:118:0,67,51:0:0:67,51:2361,1824:-341.311,-149.088,-128.919,-192.579,0,-177.226	1/2:80:0,40,40:0:0:40,40:1400,1427:-230.586,-116.686,-104.644,-114.254,0,-102.213	1/1:62:0,62,0:0:0:62,0:2150,0:-193.754,-18.6639,0,-193.754,-18.6639,-193.754	1/2:60:0,35,25:0:0:35,25:1248,900:-175.526,-73.7953,-63.2592,-102.089,0,-94.5636	1/1:118:0,118,0:0:0:118,0:4142,0:-372.967,-35.5215,0,-372.967,-35.5215,-372.967	1/2:67:0,37,30:0:0:37,30:1327,1072:-195.998,-87.7616,-76.6234,-108.594,0,-99.5636	1/2:51:0,26,24:0:0:26,24:910,860:-144.319,-70.2812,-62.4544,-74.1735,0,-66.9487	1/2:68:0,32,36:0:0:32,36:1143,1283:-198.126,-104.936,-95.3026,-93.5468,0,-82.7098	1/2:53:0,31,22:0:0:31,22:1113,788:-155.413,-64.6221,-55.2902,-91.1497,0,-84.527	1/2:35:0,16,19:0:0:16,19:565,684:-102.178,-56.1708,-51.3543,-46.3638,0,-40.6443	1/2:46:0,23,23:0:0:23,23:818,828:-134.581,-67.9204,-60.9967,-67.0182,0,-60.0945	1/1:31:0,31,0:0:0:31,0:1089,0:-98.3179,-9.33193,0,-98.3179,-9.33193,-98.3179	1/2:95:0,54,40:0:0:54,40:1924,1424:-272.892,-116.066,-99.8106,-156.832,0,-144.79	1/1:89:0,89,0:0:0:89,0:3125,0:-281.479,-26.7917,0,-281.479,-26.7917,-281.479	1/2:45:0,6,39:0:0:6,39:210,1396:-131.224,-114.139,-112.333,-17.3854,0,-5.64522	1/1:36:0,35,0:0:0:35,0:1237,0:-111.274,-10.5361,0,-111.274,-10.5361,-111.274	1/2:28:0,18,10:0:0:18,10:646,360:-82.4274,-29.734,-24.3155,-53.0529,0,-50.0426	1/1:40:0,40,0:0:0:40,0:1383,0:-124.764,-12.0412,0,-124.764,-12.0412,-124.764	1/2:139:0,68,71:0:0:68,71:2411,2532:-403.06,-206.64,-186.17,-196.657,0,-175.284	1/2:153:0,58,95:0:0:58,95:2058,3393:-444.661,-276.986,-259.526,-168.031,0,-139.433	1/2:18:0,5,13:0:0:5,13:174,468:-52.6912,-38.5463,-37.0411,-14.4961,0,-10.5827	1/2:124:0,58,66:0:0:58,66:2065,2341:-359.326,-191.021,-173.561,-168.602,0,-148.734	1/1:63:0,63,0:0:0:63,0:2227,0:-200.695,-18.9649,0,-200.695,-18.9649,-200.695	1/2:46:0,33,13:0:0:33,13:1138,468:-130.98,-38.5463,-28.6123,-92.7892,0,-88.8758	1/1:10:0,10,0:0:0:10,0:359,0:-32.6536,-3.0103,0,-32.6536,-3.0103,-32.6536	1/2:16:0,9,7:0:0:9,7:307,244:-45.0969,-20.1916,-17.4824,-25.2504,0,-23.1432	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:6:0,1,5:0:0:1,5:36,180:-17.9843,-15.0469,-14.7459,-3.29724,0,-1.79209	1/2:214:0,101,112:0:0:101,112:3574,4004:-617.583,-326.473,-296.069,-291.106,0,-257.39	1/1:56:0,55,0:0:0:55,0:1949,0:-175.366,-16.5567,0,-175.366,-16.5567,-175.366	1/2:57:0,32,25:0:0:32,25:1120,896:-164.553,-73.4346,-63.8016,-91.4728,0,-83.947	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:96:0,92,3:0:0:92,3:3202,108:-288.049,-27.6948,0,-279.236,-18.875,-278.333	1/1:14:0,14,0:0:0:14,0:499,0:-45.2459,-4.21442,0,-45.2459,-4.21442,-45.2459	1/2:120:0,68,51:0:0:68,51:2419,1824:-345.941,-148.807,-128.337,-197.209,0,-181.856	1/2:61:0,29,31:0:0:29,31:1042,1116:-176.124,-91.118,-82.3881,-85.063,0,-75.7311	1/2:67:0,27,39:0:0:27,39:960,1400:-192.489,-114.258,-106.13,-78.2857,0,-66.5455	1/1:75:0,75,0:0:0:75,0:2653,0:-239.018,-22.5773,0,-239.018,-22.5773,-239.018	1/2:76:0,40,36:0:0:40,36:1415,1284:-220.277,-105.026,-92.9851,-115.606,0,-104.769	1/1:143:0,142,1:0:0:142,1:4992,36:-449.073,-42.7463,0,-446.136,-39.449,-445.835	1/1:36:0,36,0:0:0:36,0:1282,0:-115.684,-10.8371,0,-115.684,-10.8371,-115.684	1/2:75:0,45,29:0:0:45,29:1576,1036:-212.692,-84.4643,-70.918,-128.222,0,-119.492	1/1:47:0,47,0:0:0:47,0:1638,0:-147.705,-14.1484,0,-147.705,-14.1484,-147.705	1/2:11:0,5,6:0:0:5,6:180,216:-32.6714,-17.9843,-16.4792,-15.0469,0,-13.2407	1/1:76:0,76,0:0:0:76,0:2717,0:-244.774,-22.8783,0,-244.774,-22.8783,-244.774	1/1:46:0,46,0:0:0:46,0:1629,0:-146.898,-13.8474,0,-146.898,-13.8474,-146.898	1/2:7:0,2,5:0:0:2,5:66,180:-20.3744,-15.0469,-14.4449,-5.66589,0,-4.16074	1/1:103:0,103,0:0:0:103,0:3611,0:-325.141,-31.0061,0,-325.141,-31.0061,-325.141	1/2:12:0,5,7:0:0:5,7:178,252:-35.4277,-20.9217,-19.4166,-14.8635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chr09	19806061	.	T	C	125955	PASS	AB=0.486573;ABP=21.2045;AC=54;AF=0.287234;AN=188;AO=5680;CIGAR=1X;DP=21235;DPB=21235;DPRA=1.02887;EPP=12337;EPPR=33771.6;GTI=1;LEN=1;MEANALT=1.06154;MQM=59.9898;MQMR=59.9965;NS=94;NUMALT=1;ODDS=3.50657;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199779;QR=553638;RO=15551;RPL=3097;RPP=104.013;RPPR=119.406;RPR=2583;RUN=1;SAF=3097;SAP=104.013;SAR=2583;SRF=8232;SRP=119.406;SRR=7319;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:112:112,0:112:4004:0:0:0,-33.7154,-360.55	0/0:307:307,0:307:10922:0:0:0,-92.4162,-982.878	0/0:452:452,0:452:16105:0:0:0,-136.066,-1449.13	0/0:462:460,1:460:16366:1:36:0,-135.516,-1469.04	0/1:172:84,87:84:2995:87:3090:-226.494,0,-217.946	0/1:135:65,70:65:2328:70:2462:-181.191,0,-169.141	0/1:398:210,188:210:7475:188:6581:-472.57,0,-552.986	0/1:277:149,128:149:5286:128:4499:-321.695,0,-392.492	0/1:172:86,86:86:3050:86:3055:-223.403,0,-222.953	0/0:190:190,0:190:6739:0:0:0,-57.1957,-606.587	0/1:225:112,113:112:3966:113:3951:-288.053,0,-289.402	0/0:254:253,1:253:8964:1:36:0,-72.8633,-803.151	0/1:214:120,94:120:4243:94:3292:-232.081,0,-317.631	0/1:283:132,151:132:4703:151:5246:-387.099,0,-338.24	0/1:153:77,76:77:2720:76:2645:-192.236,0,-198.985	0/1:179:105,74:105:3747:74:2581:-178.657,0,-283.546	0/1:227:121,106:121:4289:106:3737:-268.01,0,-317.848	0/1:169:84,85:84:2976:85:2986:-218.098,0,-217.198	0/0:152:152,0:152:5431:0:0:0,-45.7566,-488.92	0/1:493:245,248:245:8767:248:8831:-646.37,0,-640.611	0/0:363:361,1:361:12909:1:36:0,-105.734,-1158.03	0/1:171:68,103:68:2440:103:3659:-278.037,0,-168.379	0/0:113:113,0:113:4020:0:0:0,-34.0164,-361.989	0/1:292:195,97:195:6964:97:3463:-223.982,0,-538.927	0/0:128:128,0:128:4569:0:0:0,-38.5318,-411.375	0/1:585:305,280:305:10902:280:9884:-713.41,0,-804.975	0/1:457:243,214:243:8625:214:7540:-541.079,0,-638.681	0/1:70:41,29:41:1463:29:1001:-69.3257,0,-110.893	0/1:590:294,296:294:10413:296:10470:-764.615,0,-759.487	0/1:269:117,152:117:4178:152:5374:-402.819,0,-295.225	0/1:217:121,96:121:4328:96:3389:-239.901,0,-324.373	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:27:23,4:23:809:4:144:-5.18581,0,-65.0005	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:17:13,4:13:468:4:140:-7.82707,0,-37.3421	0/1:23:12,11:12:423:11:392:-28.6261,0,-31.4814	0/1:456:242,214:242:8651:214:7464:-534.549,0,-641.315	0/0:248:248,0:248:8786:0:0:0,-74.6554,-790.735	0/1:202:107,95:107:3823:95:3324:-238.571,0,-283.459	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:311:304,7:304:10843:7:248:0,-70.9561,-953.11	0/0:108:108,0:108:3837:0:0:0,-32.5112,-345.525	0/1:355:163,192:163:5806:192:6788:-504.133,0,-415.79	0/1:219:117,102:117:4179:102:3588:-257.204,0,-310.367	0/1:161:94,67:94:3352:67:2384:-166.352,0,-253.432	0/0:193:193,0:193:6889:0:0:0,-58.0988,-620.079	0/1:202:109,93:109:3883:93:3315:-237.761,0,-288.858	0/0:309:309,0:309:10964:0:0:0,-93.0183,-986.667	0/0:248:248,0:248:8860:0:0:0,-74.6554,-797.381	0/1:342:175,167:175:6239:167:5868:-425.281,0,-458.653	0/0:428:428,0:428:15276:0:0:0,-128.841,-1374.56	0/1:12:7,5:7:252:5:172:-12.2056,0,-19.4166	0/0:257:257,0:257:9188:0:0:0,-77.3647,-826.893	0/0:113:113,0:113:4027:0:0:0,-34.0164,-362.62	0/1:41:25,16:25:892:16:565:-38.8378,0,-68.2575	0/0:236:235,1:235:8383:1:36:0,-67.4448,-750.881	0/1:139:69,70:69:2472:70:2427:-176.841,0,-180.891	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:19:9,10:9:320:10:351:-26.2071,0,-23.4228	0/1:161:75,86:75:2672:86:3024:-223.924,0,-192.258	0/1:320:164,156:164:5843:156:5453:-394.581,0,-429.655	0/1:13:4,9:4:144:9:316:-24.8655,0,-9.40023	0/1:426:225,201:225:8035:201:7102:-511.006,0,-594.931	0/0:425:418,6:418:14865:6:212:0,-108.571,-1318.16	0/1:94:41,53:41:1443:53:1887:-141.811,0,-101.868	0/0:170:170,0:170:6080:0:0:0,-51.1751,-547.303	0/1:356:171,185:171:6072:185:6519:-479.632,0,-439.42	0/0:238:238,0:238:8458:0:0:0,-71.6451,-761.224	0/0:95:94,1:94:3343:1:36:0,-24.9996,-297.49	0/0:297:297,0:297:10586:0:0:0,-89.4059,-952.656	0/1:217:112,105:112:3992:105:3713:-269.05,0,-294.148	0/1:44:21,23:21:752:23:816:-60.5164,0,-54.7609	0/0:247:247,0:247:8763:0:0:0,-74.3544,-788.665	0/1:203:106,97:106:3787:97:3340:-239.71,0,-279.919	0/0:335:335,0:335:11916:0:0:0,-100.845,-1072.3	0/0:375:375,0:375:13397:0:0:0,-112.886,-1205.53	0/1:273:125,148:125:4444:148:5259:-391.268,0,-317.95	0/0:266:265,1:265:9428:1:32:0,-76.8747,-845.288	0/1:21:8,13:8:288:13:449:-34.4159,0,-19.9458	0/0:306:304,2:304:10838:2:72:0,-85.2785,-968.488	0/1:295:159,136:159:5639:136:4753:-339.125,0,-418.83	0/0:428:428,0:428:15300:0:0:0,-128.841,-1376.72	0/0:243:243,0:243:8621:0:0:0,-73.1503,-775.889	0/0:182:181,1:181:6422:1:36:0,-51.1892,-574.473	0/1:233:126,107:126:4453:107:3790:-271.161,0,-330.802	0/0:294:289,5:289:10278:5:170:0,-72.8686,-909.232	0/1:73:36,37:36:1280:37:1280:-93.5226,0,-93.528	0/1:191:96,95:96:3397:95:3328:-242.243,0,-248.449	0/0:221:221,0:221:7814:0:0:0,-66.5276,-703.299	0/1:203:104,99:104:3648:99:3426:-247.448,0,-267.417	0/1:284:156,128:156:5534:128:4409:-311.491,0,-412.695	0/1:237:94,143:94:3333:143:4983:-377.282,0,-228.844	0/0:254:254,0:254:9012:0:0:0,-76.461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chr09	19809436	.	C	T	33230.2	PASS	AB=0.48584;ABP=10.1439;AC=55;AF=0.292553;AN=188;AO=2000;CIGAR=1X;DP=7611;DPB=7611;DPRA=1.02159;EPP=4345.96;EPPR=12187.1;GTI=1;LEN=1;MEANALT=1;MQM=59.8395;MQMR=59.977;NS=94;NUMALT=1;ODDS=5.0927;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71594;QR=200361;RO=5611;RPL=2000;RPP=4345.96;RPPR=12187.1;RPR=0;RUN=1;SAF=0;SAP=4345.96;SAR=2000;SRF=0;SRP=12187.1;SRR=5611;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:122:122,0:122:4365:0:0:0,-36.7257,-393.022	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.638	0/0:146:146,0:146:5208:0:0:0,-43.9504,-468.861	0/1:58:27,31:27:957:31:1111:-82.8394,0,-68.9841	0/1:52:35,17:35:1245:17:608:-39.3985,0,-96.6992	0/1:83:39,44:39:1396:44:1580:-117.505,0,-100.954	0/1:151:94,57:94:3342:57:2040:-138.413,0,-255.54	0/1:48:25,23:25:892:23:809:-58.6789,0,-66.1501	0/0:130:130,0:130:4660:0:0:0,-39.1339,-419.561	0/1:76:33,43:33:1180:43:1544:-116.375,0,-83.6298	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/1:88:43,45:43:1529:45:1616:-119.222,0,-111.41	0/1:82:41,41:41:1468:41:1472:-108.084,0,-107.732	0/1:65:36,29:36:1281:29:1044:-74.7075,0,-96.0243	0/1:54:27,27:27:964:27:972:-71.5423,0,-70.8212	0/1:67:38,29:38:1349:29:1040:-73.7387,0,-101.539	0/1:55:29,26:29:1044:26:936:-68.0028,0,-77.7182	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.637	0/1:149:92,57:92:3270:57:2048:-139.733,0,-249.662	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/1:80:18,62:18:648:62:2194:-173.454,0,-34.5686	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:94:52,42:52:1860:42:1508:-107.716,0,-139.383	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.692	0/1:229:138,91:138:4898:91:3261:-224.766,0,-372.036	0/1:159:73,86:73:2600:86:3073:-228.913,0,-186.385	0/1:27:14,13:14:496:13:460:-33.6076,0,-36.8465	0/1:100:58,42:58:2068:42:1504:-105.552,0,-156.288	0/1:112:55,57:55:1964:57:2048:-150.869,0,-143.319	0/1:106:60,46:60:2148:46:1656:-117.405,0,-161.678	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:15:4,11:4:144:11:388:-30.7395,0,-8.79817	0/1:222:100,122:100:3584:122:4361:-325.778,0,-255.938	0/0:130:130,0:130:4633:0:0:0,-39.1339,-417.132	0/1:65:25,40:25:900:40:1440:-110.324,0,-61.7541	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:119:118,1:118:4221:1:36:0,-32.2243,-376.47	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/1:93:51,42:51:1820:42:1508:-108.019,0,-136.084	0/1:79:34,45:34:1224:45:1616:-121.948,0,-86.6857	0/1:72:38,34:38:1349:34:1220:-88.4314,0,-100.028	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/1:129:57,72:57:2036:72:2574:-193.069,0,-144.644	0/0:112:112,0:112:4005:0:0:0,-33.7154,-360.638	0/0:100:100,0:100:3572:0:0:0,-30.103,-321.688	0/1:156:92,64:92:3284:64:2285:-158.946,0,-248.82	0/0:134:134,0:134:4758:0:0:0,-40.338,-428.007	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:151:151,0:151:5424:0:0:0,-45.4555,-488.287	0/0:22:22,0:22:769:0:0:0,-6.62266,-69.5286	0/1:23:18,5:18:640:5:180:-9.62837,0,-51.0056	0/0:109:109,0:109:3851:0:0:0,-32.8123,-346.785	0/1:22:10,12:10:356:12:432:-32.5981,0,-25.7586	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:35:14,21:14:504:21:741:-56.4755,0,-35.162	0/1:116:45,71:45:1612:71:2544:-194.254,0,-110.451	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:152:83,69:83:2965:69:2442:-174.27,0,-221.195	0/0:181:181,0:181:6472:0:0:0,-54.4864,-582.567	0/1:65:40,25:40:1424:25:889:-60.76,0,-108.891	0/0:65:65,0:65:2309:0:0:0,-19.5669,-208.069	0/1:101:55,46:55:1956:46:1644:-117.844,0,-145.912	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.466	0/1:93:61,32:61:2196:32:1152:-75.9944,0,-169.909	0/1:14:10,4:10:356:4:144:-9.0992,0,-28.1668	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.073	0/1:76:27,49:27:972:49:1730:-133.102,0,-64.9196	0/0:153:153,0:153:5450:0:0:0,-46.0576,-490.628	0/0:109:109,0:109:3896:0:0:0,-32.8123,-350.834	0/1:87:47,40:47:1673:40:1432:-102.988,0,-124.666	0/0:146:145,1:145:5189:1:36:0,-40.3521,-463.55	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/0:89:88,1:88:3141:1:36:0,-23.1934,-279.316	0/1:84:45,39:45:1612:39:1400:-100.987,0,-120.084	0/0:218:217,1:217:7773:1:36:0,-62.0263,-696	0/0:86:86,0:86:3077:0:0:0,-25.8886,-277.157	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/1:77:45,32:45:1608:32:1152:-80.8085,0,-121.831	0/0:142:141,1:141:5033:1:36:0,-39.148,-449.518	0/1:40:19,21:19:680:21:756:-56.326,0,-49.488	0/1:77:45,32:45:1604:32:1152:-80.8002,0,-121.471	0/0:72:72,0:72:2553:0:0:0,-21.6742,-230.02	0/1:39:19,20:19:680:20:720:-53.3886,0,-49.789	0/1:98:41,57:41:1468:57:2040:-154.359,0,-102.915	0/1:75:30,45:30:1076:45:1616:-123.148,0,-74.5756	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097
chr09	19854179	.	G	A	16467.8	PASS	AB=0.599868;ABP=133.994;AC=57;AF=0.306452;AN=186;AO=938;CIGAR=1X;DP=2633;DPB=2633;DPRA=1.05176;EPP=1928.5;EPPR=3618.76;GTI=5;LEN=1;MEANALT=1;MQM=59.645;MQMR=59.9657;NS=93;NUMALT=1;ODDS=1.36211;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33099;QR=58515;RO=1693;RPL=13;RPP=1928.5;RPPR=3618.76;RPR=925;RUN=1;SAF=0;SAP=2039.85;SAR=938;SRF=0;SRP=3679.31;SRR=1693;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:8,12:8:280:12:432:-33.2006,0,-19.5187	0/0:11:11,0:11:379:0:0:0,-3.31133,-34.4406	0/0:44:44,0:44:1540:0:0:0,-13.2453,-138.889	0/0:50:49,0:49:1700:0:0:0,-14.7505,-152.923	1/1:22:2,20:2:68:20:716:-58.1799,-0.164952,0	0/1:18:5,13:5:176:13:468:-36.8499,0,-10.7665	0/1:37:15,22:15:528:22:792:-60.4676,0,-36.7133	0/1:38:15,23:15:515:23:812:-61.9618,0,-35.2359	0/1:36:14,22:14:496:22:778:-59.4934,0,-34.1372	0/0:35:35,0:35:1202:0:0:0,-10.536,-108.478	0/1:14:9,5:9:292:5:168:-11.2365,0,-22.3807	0/0:24:24,0:24:843:0:0:0,-7.22472,-76.188	0/1:21:3,18:3:93:18:620:-49.6105,0,-2.3551	0/1:15:7,8:7:235:8:277:-20.7497,0,-16.9625	0/1:13:7,6:7:239:6:208:-15.1457,0,-17.9293	0/1:16:4,12:4:121:12:424:-33.6799,0,-6.3731	0/1:13:2,11:2:72:11:376:-30.2559,0,-2.92333	0/1:9:5,4:5:168:4:140:-10.2353,0,-12.7417	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/1:36:14,22:14:478:22:771:-58.653,0,-32.5071	0/0:76:76,0:76:2614:0:0:0,-22.8783,-235.5	0/1:45:5,40:5:168:40:1415:-113.835,0,-1.90458	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/1:13:9,4:9:316:4:144:-9.40023,0,-24.8655	0/0:18:18,0:18:623:0:0:0,-5.41854,-56.3931	0/1:106:47,59:47:1658:59:2112:-158.44,0,-117.597	0/1:82:37,45:37:1279:45:1586:-118.344,0,-90.7225	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:107:42,65:42:1461:65:2300:-175.052,0,-99.572	0/1:33:15,18:15:521:18:632:-47.2722,0,-37.2823	0/1:18:8,10:8:269:10:352:-26.5997,0,-19.1176	0/0:6:6,0:6:200:0:0:0,-1.80618,-18.3277	0/1:15:8,7:8:279:7:235:-16.9617,0,-20.9321	.:.:.:.:.:.:.:.	0/1:7:3,4:3:93:4:136:-10.4683,0,-6.56952	0/1:19:9,10:9:281:10:356:-26.6617,0,-19.8739	0/1:35:23,12:23:808:12:420:-27.598,0,-62.5041	0/0:38:38,0:38:1320:0:0:0,-11.4391,-119.097	0/1:14:6,8:6:196:8:284:-21.6866,0,-13.7475	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:30:30,0:30:1031:0:0:0,-9.0309,-93.0949	0/0:8:8,0:8:265:0:0:0,-2.40824,-24.1721	0/1:32:9,23:9:296:23:816:-64.1288,0,-17.3256	0/1:20:8,12:8:262:12:411:-31.2687,0,-17.879	0/1:10:5,5:5:171:5:172:-12.8077,0,-12.7152	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5438	0/1:40:10,30:10:343:30:1063:-83.9396,0,-19.1594	0/0:38:37,1:37:1290:1:32:0,-8.23983,-113.2	0/0:39:39,0:39:1367:0:0:0,-11.7402,-123.328	0/1:56:24,32:24:843:32:1127:-84.8798,0,-59.3303	0/0:42:42,0:42:1428:0:0:0,-12.6433,-128.806	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/0:28:28,0:28:983:0:0:0,-8.42884,-88.7825	0/0:22:21,0:21:717:0:0:0,-6.32163,-64.5925	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.4848	0/0:32:30,2:30:1064:2:68:0,-3.17525,-89.614	1/1:6:0,6:0:0:6:212:-19.4239,-1.80618,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:12:4,8:4:131:8:284:-22.291,0,-8.50111	0/1:38:20,18:20:676:18:640:-46.4902,0,-49.7152	0/1:38:15,23:15:519:23:811:-61.8708,0,-35.5976	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:71:26,45:26:916:45:1590:-122.016,0,-61.3833	0/0:47:46,1:46:1598:1:36:0,-10.5501,-140.51	0/1:11:3,8:3:104:8:279:-22.1362,0,-6.39148	0/0:14:14,0:14:476:0:0:0,-4.21442,-41.881	0/1:76:32,44:32:1122:44:1535:-115.515,0,-78.408	0/0:44:43,1:43:1505:1:36:0,-9.64704,-132.143	0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1752	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:14:4,10:4:140:10:356:-28.1668,0,-8.73016	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	0/0:48:48,0:48:1677:0:0:0,-14.4494,-151.214	0/1:39:17,22:17:576:22:771:-57.7796,0,-40.4178	0/0:25:25,0:25:874:0:0:0,-7.52575,-78.9752	0/0:64:64,0:64:2246:0:0:0,-19.2659,-202.403	0/1:54:15,39:15:527:39:1392:-108.753,0,-31.5046	0/0:24:24,0:24:843:0:0:0,-7.22472,-76.188	0/1:21:10,11:10:356:11:367:-27.0257,0,-26.0596	0/0:24:24,0:24:818:0:0:0,-7.22472,-73.9301	0/1:41:21,20:21:707:20:712:-52.0644,0,-51.5997	0/0:59:59,0:59:2039:0:0:0,-17.7608,-183.777	0/0:23:23,0:23:777:0:0:0,-6.92369,-70.2391	0/0:8:8,0:8:271:0:0:0,-2.40824,-24.7194	0/1:8:4,4:4:136:4:131:-9.70523,0,-10.1673	0/0:12:12,0:12:402:0:0:0,-3.61236,-36.5018	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:13:6,7:6:190:7:237:-17.7465,0,-13.4985	0/0:11:11,0:11:370:0:0:0,-3.31133,-33.6237	0/1:9:6,3:6:203:3:108:-7.3659,0,-15.8919	0/1:38:18,20:18:591:20:703:-52.1544,0,-42.0584	0/1:23:4,19:4:125:19:672:-53.8827,0,-4.63493	0/0:61:61,0:61:2091:0:0:0,-18.3628,-188.456	0/0:15:15,0:15:520:0:0:0,-4.51545,-47.1279
chr09	19871223	.	C	G	147203	PASS	AB=0.482963;ABP=18.3264;AC=131;AF=0.704301;AN=186;AO=7189;CIGAR=1X;DP=10350;DPB=10350;DPRA=22.4891;EPP=15553;EPPR=6797.65;GTI=1;LEN=1;MEANALT=1.08696;MQM=59.9407;MQMR=60;NS=93;NUMALT=1;ODDS=0.997614;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256456;QR=112834;RO=3153;RPL=7182;RPP=15553;RPPR=6797.65;RPR=7;RUN=1;SAF=0;SAP=15613.7;SAR=7189;SRF=0;SRP=6849.66;SRR=3153;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:15,7:15:536:7:242:-15.4934,0,-41.9522	1/1:88:0,88:0:0:88:3143:-283.094,-26.4906,0	1/1:84:0,84:0:0:84:2995:-269.773,-25.2865,0	1/1:219:0,218:0:0:218:7784:-700.22,-65.6245,0	0/1:38:21,17:21:756:17:608:-43.6083,0,-56.9281	0/1:88:50,38:50:1788:38:1360:-96.21,0,-134.712	0/1:185:99,86:99:3518:86:3076:-221.378,0,-261.138	0/1:142:73,69:73:2569:69:2459:-178.818,0,-188.711	0/1:159:87,72:87:3116:72:2555:-182.337,0,-232.803	1/1:72:0,72:0:0:72:2562:-230.829,-21.6742,0	0/1:97:44,53:44:1572:53:1883:-140.461,0,-112.572	1/1:87:0,87:0:0:87:3124:-281.386,-26.1896,0	0/1:109:58,51:58:2088:51:1832:-132.349,0,-155.378	0/1:122:57,65:57:2048:65:2319:-172.236,0,-147.866	0/1:94:47,47:47:1692:47:1692:-124.27,0,-124.27	0/1:81:36,45:36:1280:45:1594:-119.365,0,-91.1198	0/1:111:54,57:54:1940:57:2036:-150.098,0,-141.462	0/1:66:35,31:35:1256:31:1116:-80.8837,0,-93.4773	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	0/1:138:67,71:67:2404:71:2544:-187.669,0,-175.074	1/1:331:0,330:0:0:330:11740:-1056.11,-99.3399,0	0/1:87:52,35:52:1868:35:1256:-87.1557,0,-142.21	1/1:89:0,89:0:0:89:3162:-284.72,-26.7917,0	0/1:121:43,78:43:1548:78:2769:-213.028,0,-103.188	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:404:191,213:191:6812:213:7597:-562.152,0,-491.536	0/1:200:119,81:119:4259:81:2884:-199.46,0,-323.282	0/1:48:15,33:15:540:33:1184:-92.4189,0,-34.4871	0/1:210:106,104:106:3808:104:3700:-269.984,0,-279.7	0/1:146:66,80:66:2364:80:2858:-213.507,0,-169.068	0/1:139:81,58:81:2904:58:2068:-144.548,0,-219.752	1/1:12:0,12:0:0:12:420:-38.134,-3.61236,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	.:.:.:.:.:.:.:.	0/1:350:181,168:181:6483:168:6007:-435.314,0,-478.135	1/1:208:0,207:0:0:207:7374:-663.347,-62.3132,0	0/1:98:60,38:60:2152:38:1356:-92.8395,0,-164.446	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:112:1,111:1:36:111:3963:-353.264,-30.1171,0	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0	0/1:142:38,104:38:1368:104:3711:-291.445,0,-80.6746	0/1:191:96,95:96:3443:95:3399:-248.609,0,-252.585	0/1:113:48,65:48:1720:65:2302:-173.424,0,-121.069	1/1:107:0,107:0:0:107:3798:-342.014,-32.2102,0	0/1:71:44,27:44:1584:27:958:-65.1626,0,-121.478	1/1:141:2,139:2:72:139:4914:-435.577,-35.6085,0	1/1:154:0,154:0:0:154:5516:-496.477,-46.3586,0	0/1:168:80,88:80:2864:88:3132:-231.46,0,-207.424	1/1:105:0,105:0:0:105:3741:-336.89,-31.6082,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:108:0,108:0:0:108:3860:-347.594,-32.5112,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	1/1:116:1,114:1:36:114:4046:-360.724,-31.38,0	0/1:38:20,18:20:716:18:640:-46.4902,0,-53.3286	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	0/1:85:53,32:53:1866:32:1144:-77.682,0,-142.628	0/1:183:97,86:97:3473:86:3075:-221.887,0,-257.691	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:201:104,97:104:3692:97:3459:-250.96,0,-271.976	1/1:185:0,184:0:0:184:6554:-589.579,-55.3895,0	0/1:61:38,23:38:1356:23:824:-56.1205,0,-103.978	1/1:60:0,60:0:0:60:2139:-192.775,-18.0618,0	0/1:321:194,127:194:6945:127:4498:-308.361,0,-528.483	1/1:84:0,84:0:0:84:2996:-269.873,-25.2865,0	1/1:38:0,37:0:0:37:1328:-119.462,-11.1381,0	1/1:74:0,74:0:0:74:2655:-239.195,-22.2762,0	0/1:148:68,80:68:2440:80:2825:-209.935,0,-175.303	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	1/1:44:2,42:2:72:42:1498:-128.242,-6.4086,0	0/1:97:57,40:57:2036:40:1421:-98.9855,0,-154.312	1/1:125:0,125:0:0:125:4480:-403.369,-37.6288,0	1/1:106:0,106:0:0:106:3774:-339.234,-31.9092,0	0/1:64:44,20:44:1576:20:703:-44.3276,0,-122.866	1/1:147:0,147:0:0:147:5267:-474.165,-44.2514,0	0/1:10:5,5:5:180:5:171:-12.7152,0,-13.5418	1/1:89:1,88:1:36:88:3149:-280.036,-23.1934,0	0/1:53:30,23:30:1072:23:824:-58.5287,0,-80.8379	1/1:128:0,128:0:0:128:4547:-409.288,-38.5318,0	1/1:148:0,148:0:0:148:5283:-475.519,-44.5524,0	1/1:90:0,90:0:0:90:3236:-291.461,-27.0927,0	0/1:251:132,118:132:4736:118:4213:-303.733,0,-350.78	1/1:398:2,396:2:72:396:14123:-1264,-112.973,0	0/1:78:44,34:44:1580:34:1220:-86.6265,0,-119.011	0/1:133:67,66:67:2408:66:2342:-171.002,0,-176.939	1/1:103:0,103:0:0:103:3704:-333.56,-31.0061,0	0/1:39:11,28:11:392:28:1008:-79.2962,0,-23.8799	0/1:122:62,60:62:2228:60:2151:-157.131,0,-164.058	0/1:180:117,63:117:4170:63:2264:-149.837,0,-321.295	1/1:94:0,94:0:0:94:3347:-301.358,-28.2968,0	1/1:121:0,121:0:0:121:4328:-389.696,-36.4246,0
chr09	19878457	.	T	C	58421.3	PASS	AB=0.506979;ABP=5.19272;AC=57;AF=0.303191;AN=188;AO=2633;CIGAR=1X;DP=9403;DPB=9403;DPRA=0.959893;EPP=163.402;EPPR=730.911;GTI=3;LEN=1;MEANALT=1.03226;MQM=59.9992;MQMR=59.9963;NS=94;NUMALT=1;ODDS=2.26044;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92461;QR=240628;RO=6766;RPL=2626;RPP=5659.86;RPPR=14453;RPR=7;RUN=1;SAF=1089;SAP=173.747;SAR=1544;SRF=2602;SRP=786.051;SRR=4164;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:33,24:33:1188:24:845:-59.2084,0,-90.0699	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.784	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:157:157,0:157:5594:0:0:0,-47.2617,-503.584	0/1:38:10,28:10:360:28:980:-77.0738,0,-21.3052	0/1:30:18,12:18:644:12:404:-27.6508,0,-49.2597	0/1:100:64,36:64:2268:36:1207:-78.8208,0,-174.278	0/1:81:44,37:44:1584:37:1332:-95.799,0,-118.468	0/1:71:40,31:40:1417:31:1074:-75.5908,0,-106.452	0/0:131:131,0:131:4610:0:0:0,-39.4349,-415.066	0/1:167:66,101:66:2330:101:3549:-269.348,0,-159.688	0/0:113:113,0:113:4034:0:0:0,-34.0164,-363.245	0/1:87:49,38:49:1760:38:1364:-96.8711,0,-132.494	0/1:179:85,94:85:3021:94:3340:-246.935,0,-218.236	0/1:138:74,63:74:2622:63:2221:-158.552,0,-194.627	0/1:127:65,62:65:2328:62:2165:-156.886,0,-171.549	0/1:56:27,29:27:968:29:1021:-75.3426,0,-70.5797	0/1:30:12,18:12:428:18:648:-49.621,0,-29.8279	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:117:55,62:55:1963:62:2128:-156.565,0,-141.724	0/0:213:213,0:213:7594:0:0:0,-64.1194,-683.499	0/1:32:13,19:13:441:19:665:-50.5398,0,-30.38	0/0:118:116,2:116:4141:2:72:0,-28.6848,-366.036	0/1:97:60,37:60:2144:37:1312:-89.1818,0,-164.028	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/1:207:100,107:100:3542:107:3753:-275.657,0,-256.678	0/1:278:139,139:139:4965:139:4957:-362.594,0,-363.312	0/1:84:44,40:44:1572:40:1436:-104.251,0,-116.485	0/1:137:61,75:61:2168:75:2609:-193.756,0,-154.084	0/1:115:64,51:64:2288:51:1804:-128.023,0,-171.563	0/1:118:58,60:58:2084:60:2112:-154.826,0,-152.308	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:393:176,217:176:6211:217:7608:-566.464,0,-440.788	0/0:95:95,0:95:3353:0:0:0,-28.5978,-301.989	0/1:78:52,26:52:1868:26:917:-59.3643,0,-144.919	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:129:125,4:125:4436:4:144:0,-25.5193,-386.099	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:114:65,49:65:2332:49:1725:-121.215,0,-175.822	0/1:179:84,95:84:2973:95:3278:-241.357,0,-213.919	0/1:121:66,55:66:2309:55:1916:-136.288,0,-171.646	0/0:93:93,0:93:3276:0:0:0,-27.9958,-295.059	0/1:62:40,22:40:1440:22:778:-51.6778,0,-111.234	0/0:138:137,1:137:4829:1:36:0,-37.9439,-431.168	0/0:60:59,1:59:2103:1:36:0,-14.4635,-185.941	0/1:122:61,61:61:2188:61:2132:-155.421,0,-160.46	0/0:37:37,0:37:1300:0:0:0,-11.1381,-117.298	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:57:56,0:56:2001:0:0:0,-16.8577,-180.002	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:135:135,0:135:4821:0:0:0,-40.639,-434.044	0/1:60:40,20:40:1381:20:716:-46.7059,0,-106.52	0/1:6:3,3:3:99:3:99:-7.4304,0,-7.4304	0/1:7:6,1:6:203:1:36:-1.49107,0,-16.494	0/1:104:65,39:65:2312:39:1402:-95.1722,0,-177.034	0/1:208:93,115:93:3322:115:4051:-302.167,0,-236.583	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:102:36,66:36:1271:66:2314:-177.813,0,-83.987	0/0:185:184,1:184:6489:1:36:0,-52.0923,-580.5	0/1:92:41,51:41:1464:51:1816:-136.027,0,-104.361	0/0:77:77,0:77:2735:0:0:0,-23.1793,-246.393	0/1:127:58,69:58:2063:69:2404:-178.384,0,-147.71	0/0:106:106,0:106:3791:0:0:0,-31.9092,-341.388	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.061	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.352	0/1:151:87,64:87:3049:64:2212:-153.887,0,-229.182	0/1:22:12,10:12:428:10:352:-25.3955,0,-32.2361	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:40:20,20:20:705:20:705:-51.7316,0,-51.7316	0/0:243:243,0:243:8674:0:0:0,-73.1503,-780.653	0/0:113:113,0:113:4027:0:0:0,-34.0164,-362.62	0/1:77:36,41:36:1292:41:1442:-106.893,0,-93.4045	0/0:86:85,1:85:3056:1:36:0,-22.2903,-271.67	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:119:119,0:119:4245:0:0:0,-35.8226,-382.229	0/1:47:20,27:20:716:27:957:-72.2955,0,-50.6193	0/0:236:233,3:233:8308:3:104:0,-61.3403,-738.017	0/0:171:171,0:171:6039:0:0:0,-51.4761,-543.619	0/0:152:152,0:152:5401:0:0:0,-45.7566,-486.224	0/1:137:60,77:60:2117:77:2616:-194.444,0,-149.556	0/0:277:277,0:277:9815:0:0:0,-83.3853,-883.307	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/1:77:32,45:32:1144:45:1620:-122.911,0,-80.0902	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/1:96:52,44:52:1860:44:1568:-112.513,0,-138.781	0/1:192:91,101:91:3233:101:3554:-262.272,0,-233.394	0/1:151:38,113:38:1345:113:3917:-307.273,0,-75.8926	0/0:57:57,0:57:2018:0:0:0,-17.1587,-181.892	0/0:255:254,0:254:8982:0:0:0,-76.4616,-808.007
chr09	20035055	.	GACT	TACG,TACT	228963	PASS	AB=0.538711,0.458854;ABP=83.2039,93.6084;AC=129,59;AF=0.68617,0.31383;AN=188;AO=8063,2835;CIGAR=1X2M1X,1X3M;DP=10922;DPB=10922;DPRA=0,0.866587;EPP=17511.6,6159.13;EPPR=0;GTI=5;LEN=4,1;MEANALT=1.92553,2.23077;MQM=53.5843,59.9093;MQMR=0;NS=94;NUMALT=2;ODDS=0.240101;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=285863,101399;QR=0;RO=0;RPL=8063,2835;RPP=17511.6,6159.13;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=17511.6,6159.13;SAR=8063,2835;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:56:0,26,29:0:0:26,29:918,1042:-158.283,-84.998,-77.1712,-73.2784,0,-64.5485	1/1:282:0,282,0:0:0:282,0:9988,0:-885.16,-84.8905,0,-885.16,-84.8905,-885.16	1/1:148:0,148,0:0:0:148,0:5221,0:-461.834,-44.5524,0,-461.834,-44.5524,-461.834	1/1:275:0,275,0:0:0:275,0:9796,0:-878.864,-82.7833,0,-878.864,-82.7833,-878.864	1/2:114:0,54,57:0:0:54,57:1909,2044:-322.021,-166.771,-150.515,-155.311,0,-138.153	1/2:77:0,34,43:0:0:34,43:1218,1540:-223.593,-125.944,-115.709,-98.0033,0,-85.0591	1/2:207:0,98,109:0:0:98,109:3492,3908:-600.924,-319.096,-289.595,-282.183,0,-249.371	1/2:130:0,72,58:0:0:72,58:2566,2080:-377.402,-170.006,-148.331,-207.752,0,-190.293	1/2:136:0,64,71:0:0:64,71:2253,2541:-388.587,-207.206,-187.94,-181.374,0,-160.001	1/1:78:0,78,0:0:0:78,0:2761,0:-248.361,-23.4803,0,-248.361,-23.4803,-248.361	1/2:22:0,10,12:0:0:10,12:346,428:-63.3195,-35.2464,-32.2361,-28.4235,0,-24.8111	1/1:66:0,66,0:0:0:66,0:2311,0:-206.086,-19.868,0,-206.086,-19.868,-206.086	1/2:38:0,27,11:0:0:27,11:967,396:-111.412,-32.6714,-24.5436,-79.0998,0,-75.7885	1/2:53:0,26,27:0:0:26,27:923,972:-154.758,-79.6701,-71.8433,-75.4448,0,-67.317	1/2:48:0,27,21:0:0:27,21:957,756:-139.888,-62.0456,-53.9178,-78.2,0,-71.8784	1/2:39:0,19,20:0:0:19,20:683,720:-114.743,-59.1082,-53.3886,-55.9937,0,-49.9731	1/2:60:0,37,23:0:0:37,23:1329,820:-175.448,-67.1988,-56.0607,-108.606,0,-101.682	1/2:54:0,21,32:0:0:21,32:739,1137:-151.781,-92.6448,-86.3232,-59.1271,0,-49.4941	1/1:37:0,36,1:0:0:36,1:1265,36:-112.106,-10.8371,0,-109.168,-7.53984,-108.867	1/2:325:0,166,156:0:0:166,156:5839,5567:-928.4,-453.789,-403.818,-474.606,0,-427.646	1/1:245:0,243,1:0:0:243,1:8600,34:-771.285,-73.1503,0,-768.797,-70.6869,-768.496	1/2:151:0,55,96:0:0:55,96:1941,3410:-436.04,-278.214,-261.657,-158.18,0,-129.281	1/1:116:0,114,2:0:0:114,2:4044,72:-361.778,-34.3174,0,-355.903,-28.0828,-355.301	1/2:190:0,122,68:0:0:122,68:4334,2448:-551.722,-200.104,-163.379,-351.976,0,-331.506	1/1:58:0,58,0:0:0:58,0:2056,0:-185.064,-17.4597,0,-185.064,-17.4597,-185.064	1/2:322:0,166,156:0:0:166,156:5879,5534:-929.404,-451.219,-401.248,-478.539,0,-431.578	1/2:209:0,81,127:0:0:81,127:2876,4549:-604.969,-370.979,-346.596,-233.986,0,-195.756	1/2:30:0,26,4:0:0:26,4:921,140:-86.6592,-11.7405,-3.91368,-75.2691,0,-74.065	1/2:439:0,228,210:0:0:228,210:8097,7520:-1269.56,-613.251,-544.616,-656.309,0,-593.093	1/2:136:0,81,55:0:0:81,55:2859,1961:-392.685,-160.206,-135.823,-232.833,0,-216.276	1/2:187:0,114,73:0:0:114,73:4058,2594:-541.973,-211.726,-177.409,-330.602,0,-308.627	1/2:10:0,9,1:0:0:9,1:321,36:-29.423,-3.29724,-0.587975,-26.4852,0,-26.1842	1/2:14:0,10,4:0:0:10,4:353,144:-40.8083,-12.1095,-9.0992,-29.0565,0,-27.8524	1/1:4:0,4,0:0:0:4,0:144,0:-13.2947,-1.20412,0,-13.2947,-1.20412,-13.2947	1/2:8:0,6,2:0:0:6,2:208,72:-23.1082,-6.23466,-4.42848,-17.2299,0,-16.6279	1/2:6:0,2,4:0:0:2,4:72,144:-17.975,-12.1095,-11.5074,-6.22497,0,-5.02085	1/2:154:0,94,60:0:0:94,60:3322,2156:-446.387,-176.241,-147.944,-270.503,0,-252.441	1/1:194:0,194,0:0:0:194,0:6839,0:-613.333,-58.3998,0,-613.333,-58.3998,-613.333	1/2:51:0,33,18:0:0:33,18:1167,642:-146.236,-52.69,-42.756,-93.8994,0,-88.4809	1/1:9:0,9,0:0:0:9,0:324,0:-29.464,-2.70927,0,-29.464,-2.70927,-29.464	1/1:185:0,184,1:0:0:184,1:6514,36:-585.207,-55.3895,0,-582.269,-52.0923,-581.968	1/1:27:0,27,0:0:0:27,0:962,0:-86.7791,-8.12781,0,-86.7791,-8.12781,-86.7791	1/2:201:0,117,84:0:0:117,84:4162,3008:-582.899,-245.659,-210.439,-337.596,0,-312.309	1/2:75:0,48,27:0:0:48,27:1706,972:-218.481,-79.6701,-65.2207,-139.169,0,-131.041	1/2:53:0,25,28:0:0:25,28:896,993:-154.215,-81.2491,-73.7233,-73.3221,0,-64.8932	1/1:103:0,103,0:0:0:103,0:3633,0:-326.749,-31.0061,0,-326.749,-31.0061,-326.749	1/2:190:0,107,83:0:0:107,83:3809,2984:-541.543,-243.806,-211.596,-298.089,0,-273.104	1/1:316:0,315,1:0:0:315,1:11173,36:-1000.79,-94.8245,0,-997.853,-91.5272,-997.552	1/1:171:0,171,0:0:0:171,0:6075,0:-544.762,-51.4761,0,-544.762,-51.4761,-544.762	1/2:160:0,72,88:0:0:72,88:2554,3149:-464.914,-257.143,-235.469,-208.126,0,-181.636	1/1:245:0,244,0:0:0:244,0:8662,0:-776.727,-73.4513,0,-776.727,-73.4513,-776.727	1/2:7:0,3,4:0:0:3,4:107,144:-20.8176,-12.1095,-11.2064,-9.06576,0,-7.86164	1/1:165:0,164,0:0:0:164,0:5809,0:-516.097,-49.3689,0,-516.097,-49.3689,-516.097	1/1:49:0,49,0:0:0:49,0:1725,0:-155.33,-14.7505,0,-155.33,-14.7505,-155.33	1/2:10:0,8,2:0:0:8,2:279,72:-28.8833,-6.23466,-3.82642,-23.0061,0,-22.4041	1/2:166:0,101,65:0:0:101,65:3594,2321:-479.591,-189.581,-159.177,-290.364,0,-270.797	1/2:69:0,36,33:0:0:36,33:1262,1180:-199.121,-96.5741,-85.737,-102.9,0,-92.9665	1/2:4:0,1,3:0:0:1,3:36,108:-12.1048,-9.17208,-8.87105,-3.29214,0,-2.38905	1/2:22:0,18,4:0:0:18,4:638,144:-64.0037,-12.1095,-6.69096,-52.2529,0,-51.0488	1/2:91:0,48,42:0:0:48,42:1700,1504:-260.981,-122.706,-108.256,-138.33,0,-125.686	1/2:71:0,40,31:0:0:40,31:1399,1116:-205.063,-91.4152,-79.374,-114.003,0,-104.671	1/2:5:0,2,3:0:0:2,3:72,108:-15.0375,-9.17208,-8.57002,-6.22497,0,-5.32188	1/2:265:0,172,93:0:0:172,93:6119,3343:-771.028,-273.089,-221.312,-498.297,0,-470.301	1/2:285:0,145,139:0:0:145,139:5137,4974:-823.548,-405.696,-362.047,-417.946,0,-376.103	1/2:79:0,39,40:0:0:39,40:1380,1402:-224.291,-114.432,-102.692,-110.208,0,-98.1665	1/1:126:0,126,0:0:0:126,0:4443,0:-397.991,-37.9298,0,-397.991,-37.9298,-397.991	1/2:316:0,170,146:0:0:170,146:6016,5229:-916.084,-426.781,-375.606,-489.658,0,-445.708	1/2:75:0,24,50:0:0:24,50:853,1777:-212.674,-144.8,-137.575,-67.8646,0,-52.8131	1/1:13:0,13,0:0:0:13,0:461,0:-41.769,-3.91339,0,-41.769,-3.91339,-41.769	1/1:84:0,84,0:0:0:84,0:2966,0:-259.521,-25.2865,0,-259.521,-25.2865,-259.521	1/2:69:0,41,28:0:0:41,28:1461,992:-200.077,-81.1656,-68.8233,-119.266,0,-110.837	1/2:12:0,8,4:0:0:8,4:287,144:-35.4822,-12.1095,-9.70126,-23.7319,0,-22.5278	1/1:106:0,105,0:0:0:105,0:3732,0:-329.227,-31.6082,0,-329.227,-31.6082,-329.227	1/2:60:0,38,22:0:0:38,22:1363,792:-174.451,-64.983,-53.5439,-109.826,0,-103.203	1/1:193:0,192,0:0:0:192,0:6789,0:-607.024,-57.7978,0,-607.024,-57.7978,-607.024	1/1:281:0,279,0:0:0:279,0:9884,0:-886.629,-83.9874,0,-886.629,-83.9874,-886.629	1/2:132:0,78,54:0:0:78,54:2757,1940:-380.751,-158.616,-135.136,-222.491,0,-206.235	1/1:153:0,153,0:0:0:153,0:5442,0:-478.806,-46.0576,0,-478.806,-46.0576,-478.806	1/2:9:0,5,4:0:0:5,4:180,144:-25.223,-12.1095,-10.6043,-13.4579,0,-12.2538	1/1:149:0,149,0:0:0:149,0:5305,0:-475.404,-44.8535,0,-475.404,-44.8535,-475.404	1/2:140:0,82,58:0:0:82,58:2915,2060:-398.548,-168.208,-143.524,-230.691,0,-213.231	1/1:282:0,282,0:0:0:282,0:10042,0:-902.138,-84.8905,0,-902.138,-84.8905,-902.138	1/1:97:0,97,0:0:0:97,0:3400,0:-305.809,-29.1999,0,-305.809,-29.1999,-305.809	1/1:54:0,54,0:0:0:54,0:1915,0:-172.399,-16.2556,0,-172.399,-16.2556,-172.399	1/2:77:0,48,29:0:0:48,29:1689,1044:-222.839,-85.5449,-71.0955,-137.65,0,-128.921	1/1:150:0,148,2:0:0:148,2:5269,72:-473.347,-44.5524,0,-467.472,-38.3178,-466.87	1/2:34:0,24,10:0:0:24,10:862,360:-98.3977,-29.7247,-22.5,-69.0302,0,-66.0199	1/2:82:0,49,33:0:0:49,33:1736,1188:-234.416,-97.2946,-82.5441,-137.475,0,-127.541	1/1:57:0,57,0:0:0:57,0:2036,0:-181.815,-17.1587,0,-181.815,-17.1587,-181.815	1/2:18:0,14,4:0:0:14,4:504,144:-53.1733,-12.1095,-7.89508,-41.4235,0,-40.2194	1/2:51:0,31,19:0:0:31,19:1106,680:-145.475,-55.4504,-46.1184,-90.0225,0,-84.3029	1/2:67:0,17,50:0:0:17,50:596,1796:-195.298,-146.871,-141.753,-48.7792,0,-33.7277	1/1:164:0,162,0:0:0:162,0:5761,0:-517.574,-48.7669,0,-517.574,-48.7669,-517.574	1/1:79:0,79,0:0:0:79,0:2794,0:-251.366,-23.7814,0,-251.366,-23.7814,-251.366
chr09	20078460	.	CACATC	CACGTT,CACATT	198198	PASS	AB=0.446668,0.545927;ABP=193.17,144.027;AC=130,58;AF=0.691489,0.308511;AN=188;AO=6062,4207;CIGAR=3M1X1M1X,5M1X;DP=10352;DPB=10352.3;DPRA=0,2.17148;EPP=13166.5,9129.71;EPPR=0;GTI=5;LEN=6,1;MEANALT=2.40426,2.8871;MQM=41.1552,57.5365;MQMR=0;NS=94;NUMALT=2;ODDS=0.0182973;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=207910,149788;QR=0;RO=0;RPL=6062,4206;RPP=13166.5,9129.71;RPPR=0;RPR=0,1;RUN=1,1;SAF=6062,4207;SAP=13166.5,9138.39;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:52:0,26,22:0:0:26,22:851,771:-127.578,-62.7116,-54.8848,-64.9098,0,-58.2871	1/1:23:0,22,0:0:0:22,0:749,0:-63.5792,-6.62266,0,-63.5792,-6.62266,-63.5792	1/1:70:0,69,0:0:0:69,0:2284,0:-196.439,-20.7711,0,-196.439,-20.7711,-196.439	1/1:45:0,45,0:0:0:45,0:1532,0:-135.796,-13.5464,0,-135.796,-13.5464,-135.796	1/2:22:0,10,12:0:0:10,12:347,424:-62.3251,-34.8797,-31.8694,-27.7906,0,-24.1782	1/2:13:0,5,8:0:0:5,8:156,288:-35.5504,-23.8426,-22.3374,-12.0272,0,-9.61892	1/2:28:0,8,20:0:0:8,20:268,707:-79.28,-57.9314,-55.5231,-21.6853,0,-15.6647	1/2:72:0,31,41:0:0:31,41:1037,1462:-199.347,-119.246,-109.914,-80.4373,0,-68.0951	1/2:49:0,29,19:0:0:29,19:997,680:-132.747,-55.5159,-46.786,-77.3238,0,-71.6043	1/1:46:0,45,0:0:0:45,0:1527,0:-134.86,-13.5464,0,-134.86,-13.5464,-134.86	1/2:225:0,128,95:0:0:128,95:4441,3404:-629.592,-277.655,-239.123,-351.976,0,-323.378	1/1:84:0,83,0:0:0:83,0:2824,0:-243.116,-24.9855,0,-243.116,-24.9855,-243.116	1/2:86:0,37,49:0:0:37,49:1255,1760:-240.414,-143.444,-132.305,-97.309,0,-82.5585	1/2:60:0,33,27:0:0:33,27:1078,968:-163.249,-79.2974,-69.3634,-84.2905,0,-76.1627	1/2:51:0,28,23:0:0:28,23:962,824:-143.64,-67.5596,-59.1308,-76.4279,0,-69.5043	1/2:77:0,45,31:0:0:45,31:1521,1079:-207.349,-87.7881,-74.2418,-119.617,0,-110.285	1/2:30:0,18,12:0:0:18,12:628,432:-84.0791,-35.3963,-29.9777,-49.0312,0,-45.4188	1/2:41:0,21,20:0:0:21,20:743,716:-116.195,-58.7039,-52.3823,-57.8386,0,-51.818	1/1:122:0,122,0:0:0:122,0:4209,0:-361.483,-36.7257,0,-361.483,-36.7257,-361.483	1/2:22:0,12,10:0:0:12,10:428,356:-63.626,-29.3705,-25.7582,-34.6089,0,-31.5986	1/1:43:0,43,0:0:0:43,0:1504,0:-131.834,-12.9443,0,-131.834,-12.9443,-131.834	1/2:37:0,5,32:0:0:5,32:170,1152:-107.849,-94.1892,-92.684,-13.9999,0,-4.36697	1/1:28:0,28,0:0:0:28,0:964,0:-84.3194,-8.42884,0,-84.3194,-8.42884,-84.3194	1/2:43:0,16,27:0:0:16,27:567,959:-123.194,-78.3815,-73.565,-45.1613,0,-37.0335	1/1:24:0,24,0:0:0:24,0:791,0:-69.6074,-7.22472,0,-69.6074,-7.22472,-69.6074	1/2:50:0,22,28:0:0:22,28:767,1004:-143.848,-82.1754,-75.5527,-62.0237,0,-53.5948	1/2:74:0,28,45:0:0:28,45:965,1601:-205.874,-129.531,-121.102,-76.433,0,-62.8867	1/2:21:0,10,10:0:0:10,10:358,360:-57.7877,-29.4263,-26.416,-28.41,0,-25.3997	1/2:57:0,20,37:0:0:20,37:699,1319:-164.096,-107.873,-101.852,-56.5732,0,-45.4351	1/2:37:0,22,15:0:0:22,15:758,536:-104.006,-44.0446,-37.4219,-60.3097,0,-55.7943	1/2:16:0,3,12:0:0:3,12:108,428:-43.6159,-34.9708,-34.0677,-8.70796,0,-5.0956	1/1:209:0,209,0:0:0:209,0:7223,0:-630.417,-62.9153,0,-630.417,-62.9153,-630.417	1/2:503:0,191,308:0:0:191,308:6586,10924:-1402.97,-887.011,-829.514,-516.02,0,-423.303	1/1:430:0,426,0:0:0:426,0:14451,0:-1244.23,-128.239,0,-1244.23,-128.239,-1244.23	1/2:504:0,229,272:0:0:229,272:7827,9694:-1390.11,-786.967,-718.031,-603.204,0,-521.324	1/2:827:0,338,481:0:0:338,481:11594,17109:-2285.23,-1391.83,-1290.08,-893.474,0,-748.679	1/2:80:0,33,47:0:0:33,47:1117,1666:-225.174,-135.966,-126.032,-89.5499,0,-75.4015	1/1:31:0,31,0:0:0:31,0:1071,0:-94.3761,-9.33193,0,-94.3761,-9.33193,-94.3761	1/2:272:0,136,136:0:0:136,136:4641,4831:-750.996,-392.875,-351.935,-358.461,0,-317.521	1/1:184:0,179,1:0:0:179,1:6150,36:-536.434,-53.8844,0,-533.497,-50.9277,-533.196	1/1:41:0,41,0:0:0:41,0:1438,0:-125.019,-12.3422,0,-125.019,-12.3422,-125.019	1/1:47:0,47,0:0:0:47,0:1613,0:-141.378,-14.1484,0,-141.378,-14.1484,-141.378	1/2:36:0,13,23:0:0:13,23:453,824:-103.398,-67.5467,-63.6333,-36.1982,0,-29.2745	1/2:39:0,26,11:0:0:26,11:893,396:-103.481,-32.3142,-24.4875,-71.1776,0,-67.8662	1/2:29:0,20,9:0:0:20,9:688,320:-80.8356,-26.3853,-20.3647,-54.7993,0,-52.0901	1/1:21:0,21,0:0:0:21,0:741,0:-66.3329,-6.32163,0,-66.3329,-6.32163,-66.3329	1/2:42:0,12,30:0:0:12,30:405,1059:-117.567,-86.2182,-82.6059,-31.6806,0,-22.6497	1/1:22:0,21,0:0:0:21,0:736,0:-64.9049,-6.32163,0,-64.9049,-6.32163,-64.9049	1/1:38:0,37,0:0:0:37,0:1295,0:-114.237,-11.1381,0,-114.237,-11.1381,-114.237	1/2:43:0,24,19:0:0:24,19:839,684:-122.876,-56.1708,-48.946,-67.0572,0,-61.3376	1/1:36:0,36,0:0:0:36,0:1229,0:-109.631,-10.8371,0,-109.631,-10.8371,-109.631	1/2:271:0,107,163:0:0:107,163:3737,5802:-769.332,-471.5,-439.289,-297.884,0,-248.816	1/1:24:0,23,0:0:0:23,0:788,0:-68.0231,-6.92369,0,-68.0231,-6.92369,-68.0231	1/1:26:0,25,0:0:0:25,0:855,0:-76.2481,-7.52575,0,-76.2481,-7.52575,-76.2481	1/2:458:0,232,219:0:0:232,219:7840,7764:-1232.91,-629.448,-559.609,-603.484,0,-537.558	1/2:61:0,23,38:0:0:23,38:742,1363:-169.156,-111.247,-104.323,-58.2389,0,-46.7998	1/2:50:0,28,21:0:0:28,21:957,756:-138.035,-61.6237,-53.1948,-76.4827,0,-70.161	1/2:338:0,153,181:0:0:153,181:5325,6448:-951.796,-524.731,-478.673,-427.167,0,-372.681	1/2:234:0,80,153:0:0:80,153:2743,5453:-663.819,-444.222,-420.139,-219.652,0,-173.595	1/2:34:0,23,11:0:0:23,11:768,383:-90.2713,-31.4881,-24.5644,-59.1214,0,-55.8101	1/2:38:0,13,25:0:0:13,25:461,896:-110.329,-73.4346,-69.5212,-37.2462,0,-29.7204	1/2:136:0,52,83:0:0:52,83:1788,2971:-384.573,-242.107,-226.453,-142.458,0,-117.473	1/2:30:0,11,19:0:0:11,19:370,684:-85.8215,-56.1646,-52.8532,-29.9999,0,-24.2803	1/2:42:0,13,29:0:0:13,29:456,1032:-120.922,-84.4636,-80.5502,-36.8071,0,-28.0772	1/2:42:0,24,18:0:0:24,18:833,644:-115.589,-52.8608,-45.6361,-63.0717,0,-57.6531	1/1:30:0,30,0:0:0:30,0:1027,0:-90.4138,-9.0309,0,-90.4138,-9.0309,-90.4138	1/2:38:0,14,23:0:0:14,23:475,815:-104.129,-66.3722,-62.1578,-37.8585,0,-30.9348	1/2:105:0,25,80:0:0:25,80:866,2835:-300.15,-231.237,-223.712,-69.2557,0,-45.1733	1/1:353:0,346,2:0:0:346,2:11871,72:-1038.57,-104.156,0,-1032.69,-98.2545,-1032.09	1/1:24:0,22,0:0:0:22,0:757,0:-65.2715,-6.62266,0,-65.2715,-6.62266,-65.2715	1/2:25:0,14,11:0:0:14,11:498,387:-71.7481,-31.8499,-27.6355,-40.2492,0,-36.9379	1/2:445:0,228,211:0:0:228,211:7850,7524:-1237.72,-612.083,-543.448,-625.704,0,-562.187	1/1:39:0,38,1:0:0:38,1:1304,36:-112.469,-11.4391,0,-109.531,-8.1419,-109.23	1/2:78:0,55,23:0:0:55,23:1854,815:-210.076,-66.6427,-50.086,-143.778,0,-136.854	1/1:68:0,67,0:0:0:67,0:2268,0:-199.172,-20.169,0,-199.172,-20.169,-199.172	1/1:58:0,58,0:0:0:58,0:2029,0:-178.411,-17.4597,0,-178.411,-17.4597,-178.411	1/2:57:0,33,23:0:0:33,23:1150,820:-155.27,-66.8088,-56.8748,-88.5108,0,-81.5871	1/1:38:0,38,0:0:0:38,0:1314,0:-112.497,-11.4391,0,-112.497,-11.4391,-112.497	1/2:566:0,241,322:0:0:241,322:8289,11495:-1572.7,-932.473,-859.924,-640.329,0,-543.398	1/1:29:0,29,0:0:0:29,0:1005,0:-88.5638,-8.72987,0,-88.5638,-8.72987,-88.5638	1/2:39:0,11,28:0:0:11,28:394,991:-111.436,-81.0186,-77.7072,-30.7621,0,-22.3332	1/1:66:0,66,0:0:0:66,0:2303,0:-203.46,-19.868,0,-203.46,-19.868,-203.46	1/1:80:0,80,0:0:0:80,0:2723,0:-239.94,-24.0824,0,-239.94,-24.0824,-239.94	1/1:68:0,68,0:0:0:68,0:2337,0:-206.652,-20.47,0,-206.652,-20.47,-206.652	1/2:35:0,22,13:0:0:22,13:761,468:-99.2529,-38.5463,-31.9236,-61.0592,0,-57.1458	1/1:91:0,89,1:0:0:89,1:3021,36:-266.889,-26.7917,0,-263.951,-23.8221,-263.65	1/2:22:0,10,12:0:0:10,12:343,428:-61.8338,-35.2196,-32.2093,-26.9557,0,-23.3434	1/2:57:0,32,25:0:0:32,25:1095,863:-154.851,-70.3796,-60.7466,-84.8083,0,-77.2826	1/1:67:0,67,0:0:0:67,0:2297,0:-197.277,-20.169,0,-197.277,-20.169,-197.277	1/2:412:0,179,231:0:0:179,231:6166,8247:-1158.09,-671.794,-617.909,-486.394,0,-416.856	1/2:502:0,216,285:0:0:216,285:7359,10155:-1404.48,-826.608,-761.586,-578.006,0,-492.213	1/2:44:0,20,24:0:0:20,24:706,832:-124.41,-67.9131,-61.8925,-56.8437,0,-49.619	1/1:5:0,5,0:0:0:5,0:178,0:-15.2036,-1.50515,0,-15.2036,-1.50515,-15.2036	1/1:45:0,44,0:0:0:44,0:1529,0:-135.128,-13.2453,0,-135.128,-13.2453,-135.128
chr09	20130512	.	TTCA	CTCG,TTCG	514522	PASS	AB=0.518979,0.477634;ABP=39.0291,53.0345;AC=131,57;AF=0.696809,0.303191;AN=188;AO=13783,5521;CIGAR=1X2M1X,3M1X;DP=19374;DPB=19375.5;DPRA=0,1.17931;EPP=29923.7,11983;EPPR=9.52472;GTI=0;LEN=4,1;MEANALT=2.43617,2.70423;MQM=59.9322,59.987;MQMR=60;NS=94;NUMALT=2;ODDS=12.7641;PAIRED=0,0;PAIREDR=0;PAO=4.5,1.5;PQA=162,54;PQR=0;PRO=0;QA=481711,196047;QR=102;RO=3;RPL=7723,2997;RPP=438.718,91.0055;RPPR=9.52472;RPR=6060,2524;RUN=1,1;SAF=7722,2996;SAP=437.67,90.2629;SAR=6061,2525;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:94:0,54,39:0:0:54,39:1914,1379:-268.233,-112.306,-96.0502,-155.921,0,-144.181	1/1:303:0,303,0:0:0:303,0:10618,0:-955.536,-91.2121,0,-955.536,-91.2121,-955.536	1/1:375:0,373,0:0:0:373,0:13082,0:-1176.88,-112.284,0,-1176.88,-112.284,-1176.88	1/1:535:0,528,3:0:0:528,3:18400,108:-1655.34,-158.944,0,-1646.53,-150.096,-1645.62	1/2:144:0,80,64:0:0:80,64:2824,2291:-417.147,-187.185,-163.102,-230.318,0,-211.052	1/2:95:0,45,50:0:0:45,50:1572,1787:-273.924,-146.06,-132.514,-128.217,0,-113.165	1/2:203:0,109,93:0:0:109,93:3824,3281:-578.47,-267.276,-234.464,-311.308,0,-283.312	1/2:308:0,141,166:0:0:141,166:4887,5844:-873.074,-475.877,-433.432,-397.314,0,-347.343	1/2:280:0,141,139:0:0:141,139:4852,4936:-796.527,-402.492,-360.047,-394.385,0,-352.542	1/1:184:0,184,0:0:0:184,0:6406,0:-576.642,-55.3895,0,-576.642,-55.3895,-576.642	1/2:146:0,90,55:0:0:90,55:3120,1949:-412.35,-158.768,-131.675,-253.574,0,-237.017	1/1:231:0,230,0:0:0:230,0:7991,0:-718.876,-69.2369,0,-718.876,-69.2369,-718.876	1/2:243:1,125,117:1:36:125,117:4387,4135:-690.542,-333.818,-299.127,-354.08,0,-321.797	1/2:152:0,72,78:0:0:72,78:2496,2741:-426.051,-223.178,-201.504,-202.948,0,-179.468	1/2:228:0,121,106:0:0:121,106:4228,3738:-648.391,-304.459,-268.035,-344.031,0,-312.122	1/2:126:0,65,60:0:0:65,60:2267,2144:-359.238,-174.865,-155.298,-184.424,0,-166.363	1/2:136:0,79,56:0:0:79,56:2777,1956:-385.141,-159.186,-135.404,-226.034,0,-209.176	1/2:133:0,69,64:0:0:69,64:2420,2268:-382.049,-185.115,-164.344,-197.287,0,-178.021	1/1:101:0,100,0:0:0:100,0:3536,0:-318.093,-30.103,0,-318.093,-30.103,-318.093	1/2:376:0,221,154:0:0:221,154:7803,5492:-1083.24,-447.807,-381.28,-635.543,0,-589.185	1/1:354:0,350,1:0:0:350,1:12167,36:-1094.58,-105.361,0,-1091.65,-102.411,-1091.34	1/2:112:0,39,73:0:0:39,73:1342,2595:-320.81,-211.824,-200.084,-109.335,0,-87.3594	1/1:178:0,177,1:0:0:177,1:6201,36:-557.839,-53.2823,0,-554.902,-49.9851,-554.601	1/2:201:0,106,93:0:0:106,93:3698,3297:-569.484,-268.72,-236.811,-300.883,0,-272.887	1/1:149:0,146,2:0:0:146,2:5116,72:-460.281,-43.9504,0,-454.406,-37.969,-453.804	1/2:623:0,328,292:0:0:328,292:11449,10377:-1776.92,-845.707,-746.969,-931.313,0,-843.412	1/2:524:0,279,241:0:0:279,241:9779,8554:-1492.72,-696.996,-613.009,-795.755,0,-723.207	1/2:113:0,53,60:0:0:53,60:1859,2135:-325.635,-174.356,-158.401,-151.633,0,-133.571	1/2:486:0,251,235:0:0:251,235:8757,8389:-1396.5,-684.272,-608.713,-712.58,0,-641.838	1/2:150:0,91,58:0:0:91,58:3208,2057:-428.619,-167.649,-140.255,-261.032,0,-243.573	1/2:241:0,104,136:0:0:104,136:3601,4836:-686.799,-394.154,-362.847,-292.695,0,-251.755	1/1:20:0,20,0:0:0:20,0:699,0:-63.2332,-6.0206,0,-63.2332,-6.0206,-63.2332	1/2:30:0,16,14:0:0:16,14:568,504:-87.7613,-41.4837,-36.6672,-46.6351,0,-42.4207	1/1:17:0,17,0:0:0:17,0:610,0:-55.2329,-5.11751,0,-55.2329,-5.11751,-55.2329	1/2:13:0,7,6:0:0:7,6:244,203:-36.6442,-16.795,-14.6878,-20.1921,0,-18.386	1/2:39:0,21,18:0:0:21,18:723,640:-111.227,-52.5108,-46.1891,-59.0661,0,-53.6476	1/2:532:0,258,273:0:0:258,273:9049,9728:-1529.32,-792.932,-715.266,-736.381,0,-654.2	1/1:204:0,201,1:0:0:201,1:7002,36:-629.914,-60.507,0,-626.977,-57.5496,-626.676	1/2:133:0,80,51:0:0:80,51:2819,1815:-377.533,-148.015,-123.932,-229.608,0,-214.256	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:246:0,244,1:0:0:244,1:8564,36:-770.458,-73.4513,0,-767.521,-70.469,-767.22	1/1:106:0,105,0:0:0:105,0:3675,0:-330.686,-31.6082,0,-330.686,-31.6082,-330.686	1/2:411:0,224,186:0:0:224,186:7870,6651:-1182.81,-542.257,-474.826,-640.49,0,-584.498	1/2:191:1,90,100:1:36:90,100:3185,3534:-543.993,-284.869,-260.714,-256.481,0,-229.316	1/2:167:0,102,65:0:0:102,65:3575,2323:-480.667,-189.763,-159.058,-291.258,0,-271.692	1/1:205:0,202,0:0:0:202,0:6973,0:-626.953,-60.8081,0,-626.953,-60.8081,-626.953	1/2:230:0,137,92:0:0:137,92:4805,3283:-658.751,-267.734,-226.493,-391.11,0,-363.415	1/1:266:0,264,1:0:0:264,1:9153,36:-823.437,-79.4719,0,-820.499,-76.5046,-820.198	1/1:144:0,144,0:0:0:144,0:5006,0:-450.698,-43.3483,0,-450.698,-43.3483,-450.698	1/2:310:0,163,147:0:0:163,147:5721,5238:-892.813,-427.222,-378.154,-465.945,0,-421.693	1/1:190:0,188,1:0:0:188,1:6575,36:-591.48,-56.5936,0,-588.543,-53.6562,-588.242	1/2:19:0,13,6:0:0:13,6:444,207:-53.1892,-17.1607,-13.2473,-36.3722,0,-34.566	1/1:264:0,263,1:0:0:263,1:9259,36:-832.899,-79.1709,0,-829.962,-75.8736,-829.661	1/1:93:0,93,0:0:0:93,0:3272,0:-294.703,-27.9958,0,-294.703,-27.9958,-294.703	1/2: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chr09	20131235	.	T	A	24503.9	PASS	AB=0.502231;ABP=3.13628;AC=58;AF=0.308511;AN=188;AO=1476;CIGAR=1X;DP=5015;DPB=5015;DPRA=1.00081;EPP=3199.42;EPPR=7642.31;GTI=2;LEN=1;MEANALT=1.01667;MQM=59.6443;MQMR=59.9616;NS=94;NUMALT=1;ODDS=0.198867;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52744;QR=126443;RO=3538;RPL=1;RPP=3199.42;RPPR=7650.98;RPR=1475;RUN=1;SAF=1476;SAP=3208.1;SAR=0;SRF=3537;SRP=7677;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:21,14:21:744:14:492:-34.0744,0,-56.7464	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:109:109,0:109:3899:0:0:0,-32.8123,-351.103	0/0:112:112,0:112:3988:0:0:0,-33.7154,-359.1	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:83:30,53:30:1067:53:1904:-146.645,0,-71.3557	0/1:71:36,35:36:1284:35:1247:-91.1354,0,-94.4903	0/1:53:27,26:27:972:26:936:-68.6049,0,-71.8433	0/0:54:54,0:54:1935:0:0:0,-16.2556,-174.426	0/1:57:31,26:31:1108:26:936:-67.3937,0,-82.8723	0/0:122:122,0:122:4332:0:0:0,-36.7257,-390.057	0/1:126:68,58:68:2435:58:2062:-147.897,0,-181.475	0/1:102:56,46:56:2012:46:1633:-116.529,0,-150.648	0/1:98:47,51:47:1688:51:1836:-135.926,0,-122.706	0/1:68:33,35:33:1180:35:1256:-92.8625,0,-86.038	0/1:43:17,26:17:599:26:936:-71.607,0,-41.2938	0/1:52:30,22:30:1054:22:788:-55.583,0,-79.5042	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:47:30,17:30:1076:17:604:-40.5342,0,-83.0044	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/1:28:13,15:13:468:15:536:-40.146,0,-34.0308	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.869	0/1:28:15,13:15:531:13:460:-33.2069,0,-39.6931	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:96:43,53:43:1544:53:1892:-141.659,0,-110.354	0/1:82:43,39:43:1523:39:1384:-100.168,0,-112.678	0/1:32:16,16:16:576:16:567:-41.7231,0,-42.542	0/1:105:49,56:49:1760:56:2012:-149.744,0,-127.076	0/1:42:23,19:23:828:19:680:-48.8859,0,-62.2009	0/1:43:19,24:19:680:24:846:-63.507,0,-48.5849	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:157:81,76:81:2904:76:2720:-197.779,0,-214.334	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:42:27,15:27:959:15:540:-36.2851,0,-73.974	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:43:40,3:40:1440:3:108:0,-2.86912,-119.823	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/1:50:27,23:27:972:23:824:-59.4318,0,-72.7464	0/1:82:38,44:38:1347:44:1572:-117.087,0,-96.845	0/1:58:27,31:27:972:31:1116:-83.2834,0,-70.3382	0/0:31:31,0:31:1090:0:0:0,-9.33193,-98.4075	0/1:27:14,13:14:504:13:468:-34.3314,0,-37.5703	0/0:57:56,1:56:2008:1:36:0,-13.5604,-177.395	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/1:56:29,27:29:1036:27:953:-69.224,0,-76.6962	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.415	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:61:27,34:27:964:34:1201:-90.0267,0,-68.714	0/1:25:16,9:16:572:9:320:-21.6153,0,-44.2877	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:44:18,26:18:644:26:928:-70.5874,0,-45.0453	0/1:105:52,52:52:1863:52:1852:-135.197,0,-136.282	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:52:22,30:22:779:30:1072:-81.1371,0,-54.7785	0/1:37:19,18:19:680:18:644:-47.1074,0,-50.3911	0/1:41:31,10:31:1116:10:360:-20.4021,0,-88.4095	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:82:37,45:37:1323:45:1608:-120.286,0,-94.6869	0/1:74:33,41:33:1188:41:1468:-110.14,0,-84.9524	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.689	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:40:18,22:18:644:22:784:-58.8414,0,-46.2494	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.178	0/1:15:11,4:11:387:4:136:-8.05666,0,-30.6505	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.893	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.896	0/1:59:33,26:33:1179:26:919:-65.2654,0,-88.6518	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:12:10,2:10:356:2:68:-2.84535,0,-28.7689	0/0:50:49,1:49:1748:1:36:0,-11.4532,-153.997	0/1:57:30,27:30:1080:27:968:-70.2753,0,-80.3545	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.639	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.27	0/0:120:120,0:120:4303:0:0:0,-36.1236,-387.445	0/1:55:34,21:34:1211:21:752:-51.4496,0,-92.7389	0/0:132:131,1:131:4670:1:36:0,-36.1377,-416.854	0/1:23:10,13:10:352:13:468:-35.5195,0,-25.0945	0/1:66:31,35:31:1112:35:1256:-93.4659,0,-80.5234	0/0:85:85,0:85:3018:0:0:0,-25.5875,-271.851	0/1:63:29,34:29:1035:34:1224:-91.4975,0,-74.4982	0/1:125:54,71:54:1931:71:2548:-191.918,0,-136.437	0/1:72:21,51:21:752:51:1820:-142.402,0,-46.3321	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:136:136,0:136:4845:0:0:0,-40.9401,-436.205
chr09	20131350	.	G	A	107037	PASS	AB=0.504095;ABP=3.56163;AC=132;AF=0.702128;AN=188;AO=5125;CIGAR=1X;DP=7006;DPB=7006;DPRA=0;EPP=11105.8;EPPR=4074.53;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9159;MQMR=59.6019;NS=94;NUMALT=1;ODDS=0.620496;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183616;QR=67313;RO=1879;RPL=5122;RPP=11105.8;RPPR=4083.21;RPR=3;RUN=1;SAF=5125;SAP=11131.8;SAR=0;SRF=1878;SRP=4074.53;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2127	1/1:94:0,94:0:0:94:3363:-301.866,-28.2968,0	1/1:122:0,122:0:0:122:4375:-393.922,-36.7257,0	1/1:161:0,161:0:0:161:5767:-519.128,-48.4658,0	0/1:22:10,12:10:356:12:432:-32.5985,0,-25.7539	0/1:38:25,13:25:900:13:468:-31.0205,0,-69.8645	1/1:162:0,162:0:0:162:5808:-522.828,-48.7669,0	0/1:111:59,52:59:2086:52:1864:-134.625,0,-154.421	0/1:63:28,35:28:1000:35:1260:-94.7406,0,-71.3239	1/1:97:0,97:0:0:97:3479:-312.889,-29.1999,0	0/1:25:17,8:17:612:8:288:-18.7417,0,-47.8877	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:44:23,21:23:824:21:737:-53.4053,0,-61.238	0/1:46:26,20:26:936:20:720:-51.2814,0,-70.6257	0/1:39:25,14:25:900:14:504:-33.9579,0,-69.5799	0/1:25:9,16:9:324:16:576:-44.6492,0,-21.9801	0/1:39:24,15:24:864:15:530:-36.2914,0,-66.3286	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:186:70,116:70:2512:116:4161:-318.676,0,-170.334	1/1:118:0,118:0:0:118:4238:-381.597,-35.5215,0	0/1:113:72,41:72:2592:41:1468:-98.3997,0,-199.512	1/1:89:1,88:1:36:88:3130:-278.312,-23.1934,0	0/1:80:36,44:36:1277:44:1584:-118.765,0,-91.1408	1/1:54:0,54:0:0:54:1931:-174.066,-16.2556,0	0/1:281:113,168:113:4056:168:6036:-458.752,0,-280.637	0/1:158:56,102:56:2016:102:3666:-282.58,0,-133.213	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8512	0/1:249:99,150:99:3541:150:5365:-408.023,0,-243.941	0/1:119:56,63:56:2003:63:2264:-168.195,0,-144.715	0/1:117:63,54:63:2268:54:1944:-140.015,0,-168.985	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:107:52,55:52:1868:55:1980:-146.264,0,-136.189	1/1:192:0,192:0:0:192:6843:-615.739,-57.7978,0	0/1:32:24,8:24:864:8:288:-16.6344,0,-68.445	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:135:3,132:3:108:132:4725:-415.333,-30.5639,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:108:52,56:52:1859:56:1997:-147.491,0,-134.939	0/1:30:20,10:20:716:10:360:-23.7134,0,-55.6308	0/1:31:17,14:17:604:14:491:-35.1653,0,-45.3587	1/1:63:0,63:0:0:63:2222:-200.049,-18.9649,0	0/1:89:42,47:42:1512:47:1688:-125.414,0,-109.416	1/1:169:0,169:0:0:169:6022:-542.07,-50.8741,0	1/1:84:0,84:0:0:84:3016:-271.114,-25.2865,0	0/1:111:60,50:60:2152:50:1766:-125.752,0,-160.434	1/1:151:0,151:0:0:151:5414:-487.389,-45.4555,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-25.559	1/1:114:0,114:0:0:114:4092:-368.465,-34.3174,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:16:10,6:10:356:6:212:-14.6083,0,-27.5629	0/1:102:43,59:43:1544:59:2124:-160.723,0,-108.534	0/1:49:25,24:25:891:24:864:-63.3321,0,-65.7565	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:12:4,8:4:144:8:273:-21.2878,0,-9.70126	0/1:55:27,28:27:968:28:1008:-74.4797,0,-70.8575	0/1:55:21,34:21:752:34:1224:-93.9104,0,-51.4188	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	0/1:149:82,67:82:2940:67:2404:-171.763,0,-219.972	0/1:153:65,88:65:2307:88:3145:-237.217,0,-161.832	0/1:53:24,29:24:864:29:1044:-78.3202,0,-62.1233	1/1:63:0,63:0:0:63:2249:-202.671,-18.9649,0	0/1:144:69,75:69:2476:75:2687:-198.726,0,-179.603	0/1:115:75,39:75:2692:39:1404:-91.9821,0,-207.793	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	0/1:52:31,21:31:1103:21:748:-51.9917,0,-83.9262	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5408	1/1:154:0,154:0:0:154:5520:-496.901,-46.3586,0	0/1:37:25,12:25:896:12:432:-28.0831,0,-69.8222	1/1:124:0,124:0:0:124:4456:-401.207,-37.3277,0	1/1:125:0,125:0:0:125:4481:-403.451,-37.6288,0	0/1:43:29,14:29:1025:14:504:-32.7538,0,-79.6164	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:117:0,117:0:0:117:4189:-377.19,-35.2205,0	0/1:107:47,60:47:1692:60:2156:-162.093,0,-120.344	1/1:210:0,210:0:0:210:7536:-678.276,-63.2163,0	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:39:28,11:28:1008:11:396:-24.2426,0,-79.2953	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:38:18,20:18:633:20:720:-53.6896,0,-45.8559	0/1:44:26,18:26:932:18:648:-45.4066,0,-70.9535	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7095	0/1:54:34,20:34:1208:20:712:-47.5907,0,-92.7612	0/1:36:20,16:20:716:16:561:-39.9776,0,-53.9297	1/1:80:0,80:0:0:80:2861:-257.681,-24.0824,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0
chr09	20174717	.	A	G	23981.8	PASS	AB=0.458308;ABP=52.6224;AC=56;AF=0.301075;AN=186;AO=1518;CIGAR=1X;DP=5625;DPB=5625;DPRA=1.11249;EPP=3299.31;EPPR=8916.9;GTI=2;LEN=1;MEANALT=1.03125;MQM=59.9282;MQMR=59.9922;NS=93;NUMALT=1;ODDS=0.573814;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53887;QR=146841;RO=4105;RPL=1518;RPP=3299.31;RPPR=8916.9;RPR=0;RUN=1;SAF=0;SAP=3299.31;SAR=1518;SRF=0;SRP=8916.9;SRR=4105;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:12,6:12:428:6:212:-14.0063,0,-33.4403	0/0:119:119,0:119:4257:0:0:0,-35.8226,-383.307	0/0:92:91,1:91:3259:1:36:0,-24.0965,-289.932	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/1:37:17,20:17:612:20:703:-52.4554,0,-44.2753	0/1:31:18,13:18:640:13:464:-32.7656,0,-48.5974	0/0:58:57,1:57:2031:1:36:0,-13.8615,-179.464	0/1:98:68,30:68:2421:30:1068:-66.9311,0,-188.644	0/1:37:18,19:18:648:19:676:-50.0299,0,-47.5138	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:44:24,20:24:856:20:707:-50.7093,0,-64.1158	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:77:31,46:31:1104:46:1644:-125.069,0,-76.4913	0/1:63:29,34:29:1017:34:1207:-89.9704,0,-72.8749	0/1:48:25,23:25:896:23:815:-59.221,0,-66.5109	0/1:55:23,32:23:820:32:1117:-84.2333,0,-57.5659	0/1:104:60,44:60:2148:44:1572:-110.464,0,-162.28	0/1:77:36,41:36:1288:41:1445:-107.165,0,-93.0443	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:84:56,28:56:2008:28:992:-64.3079,0,-155.707	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.286	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/0:27:26,1:26:932:1:36:0,-4.52953,-80.6006	0/1:49:27,22:27:972:22:792:-56.8552,0,-73.0474	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:170:106,64:106:3774:64:2275:-153.835,0,-288.682	0/1:102:58,44:58:2063:44:1572:-111.067,0,-155.236	0/1:61:40,21:40:1431:21:739:-48.4695,0,-110.724	0/1:99:65,34:65:2336:34:1212:-79.5844,0,-180.697	0/1:84:60,24:60:2144:24:856:-52.0461,0,-167.941	0/1:43:18,25:18:648:25:885:-67.0227,0,-45.7076	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:7:4,3:4:136:3:108:-7.96796,0,-10.4683	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/1:155:81,74:81:2908:74:2643:-191.457,0,-215.295	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:61:33,28:33:1175:28:983:-70.3135,0,-87.6941	.:.:.:.:.:.:.:.	0/0:85:84,1:84:2987:1:36:0,-21.9893,-265.465	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:89:50,39:50:1792:39:1373:-97.0752,0,-134.771	0/1:93:54,39:54:1940:39:1387:-97.1324,0,-146.88	0/1:83:35,48:35:1252:48:1702:-128.477,0,-87.9996	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:63:35,28:35:1252:28:981:-69.6371,0,-94.0202	0/0:105:103,2:103:3688:2:72:0,-24.7714,-325.286	0/0:79:78,1:78:2787:1:36:0,-20.1831,-247.472	0/1:76:46,30:46:1644:30:1068:-73.5538,0,-125.369	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:11:8,3:8:279:3:108:-6.76384,0,-22.1362	0/1:63:31,32:31:1112:32:1112:-81.4194,0,-81.4265	0/1:14:7,7:7:244:7:252:-18.8145,0,-18.085	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.44552	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:41:22,19:22:788:19:680:-49.1869,0,-58.9026	0/1:84:52,32:52:1868:32:1135:-77.1715,0,-143.113	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:73:40,33:40:1436:33:1180:-84.5329,0,-107.562	0/1:70:35,35:35:1248:35:1252:-91.913,0,-91.5528	0/1:41:28,13:28:993:13:464:-29.7553,0,-77.3403	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:85:47,38:47:1688:38:1360:-97.113,0,-126.619	0/1:33:13,20:13:468:20:712:-54.4727,0,-32.5257	0/0:29:28,1:28:1004:1:36:0,-5.13159,-87.0776	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:100:50,49:50:1792:49:1751:-127.709,0,-131.401	0/1:16:10,6:10:356:6:208:-14.2426,0,-27.5648	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:73:39,34:39:1388:34:1212:-87.4111,0,-103.244	0/0:94:94,0:94:3384:0:0:0,-28.2968,-304.774	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/1:89:46,43:46:1644:43:1503:-108.771,0,-121.457	0/0:98:98,0:98:3520:0:0:0,-29.5009,-316.995	0/1:13:8,5:8:284:5:176:-12.2716,0,-21.99	0/0:95:95,0:95:3378:0:0:0,-28.5978,-304.236	0/1:66:35,31:35:1248:31:1108:-80.1036,0,-92.7569	0/0:109:108,1:108:3841:1:36:0,-29.214,-342.286	0/0:107:107,0:107:3815:0:0:0,-32.2102,-343.548	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:98:43,54:43:1530:54:1915:-143.067,0,-108.432	0/0:126:124,2:124:4443:2:72:0,-31.0931,-393.203	0/1:38:16,22:16:576:22:792:-60.1665,0,-40.7358	0/1:65:29,36:29:1036:36:1283:-96.2057,0,-73.987	0/0:48:48,0:48:1706:0:0:0,-14.4494,-153.824	0/1:31:15,16:15:531:16:565:-41.8477,0,-38.79	0/1:78:41,37:41:1467:37:1307:-94.4504,0,-108.845	0/1:52:14,38:14:500:38:1330:-104.331,0,-29.6826	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916
chr09	20191221	.	AAGCCA	GAGCCA,GAGACA	146628	PASS	AB=0.501397,0.491152;ABP=3.06491,5.20065;AC=134,54;AF=0.712766,0.287234;AN=188;AO=5232,1590;CIGAR=1X5M,1X2M1X2M;DP=6874;DPB=6873.83;DPRA=49.7899,0.771466;EPP=11338.1,3455.65;EPPR=0;GTI=3;LEN=1,6;MEANALT=2.08696,2.45614;MQM=59.6175,52.4503;MQMR=0;NS=94;NUMALT=2;ODDS=1.99487;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=186540,56507;QR=0;RO=0;RPL=5229,1590;RPP=11338.1,3455.65;RPPR=0;RPR=3,0;RUN=1,1;SAF=0,0;SAP=11364.2,3455.65;SAR=5232,1590;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1050,0:-94.5189,-9.0309,0,-94.5189,-9.0309,-94.5189	1/1:80:0,79,0:0:0:79,0:2836,0:-254.779,-23.7814,0,-254.779,-23.7814,-254.779	1/1:232:0,229,0:0:0:229,0:8157,0:-733.321,-68.9359,0,-733.321,-68.9359,-733.321	1/1:179:0,177,0:0:0:177,0:6342,0:-570.503,-53.2823,0,-570.503,-53.2823,-570.503	1/2:84:0,38,46:0:0:38,46:1354,1640:-243.505,-133.158,-121.719,-110.702,0,-96.8546	1/2:51:0,18,30:0:0:18,30:644,1065:-138.728,-86.2116,-80.7931,-52.5302,0,-43.4993	1/2:72:0,50,22:0:0:50,22:1784,783:-209.504,-64.0758,-49.0243,-145.784,0,-139.162	1/1:104:0,104,0:0:0:104,0:3681,0:-331.443,-31.3071,0,-331.443,-31.3071,-331.443	1/2:30:0,17,13:0:0:17,13:595,462:-86.1931,-37.7858,-32.6683,-48.7592,0,-44.8458	1/1:51:0,51,0:0:0:51,0:1824,0:-164.436,-15.3525,0,-164.436,-15.3525,-164.436	1/2:39:0,23,16:0:0:23,16:819,561:-112.684,-45.9353,-39.0116,-67.1009,0,-62.2844	1/1:83:0,83,0:0:0:83,0:2966,0:-267.152,-24.9855,0,-267.152,-24.9855,-267.152	1/1:64:0,64,0:0:0:64,0:2286,0:-205.884,-19.2659,0,-205.884,-19.2659,-205.884	1/2:39:0,18,20:0:0:18,20:644,708:-110.035,-57.5186,-52.1,-52.5132,0,-46.4926	1/2:53:0,34,19:0:0:34,19:1224,665:-154.215,-54.343,-44.108,-100.225,0,-94.5055	1/2:39:0,11,27:0:0:11,27:396,965:-110.831,-78.5175,-75.2062,-32.3667,0,-24.2389	1/2:28:0,14,14:0:0:14,14:500,500:-81.4184,-40.6518,-36.4373,-41.1218,0,-36.9073	1/2:20:0,9,11:0:0:9,11:311,396:-57.7139,-32.4763,-29.7671,-25.5884,0,-22.2771	1/1:18:0,17,0:0:0:17,0:612,0:-55.0473,-5.11751,0,-55.0473,-5.11751,-55.0473	1/2:162:0,83,78:0:0:83,78:2971,2775:-467.994,-225.735,-200.749,-242.366,0,-218.885	1/1:83:0,82,0:0:0:82,0:2915,0:-262.1,-24.6845,0,-262.1,-24.6845,-262.1	1/2:63:0,18,45:0:0:18,45:644,1603:-183.339,-130.827,-125.408,-52.8697,0,-39.3234	1/2:73:0,52,20:0:0:52,20:1851,706:-207.947,-57.0906,-41.4371,-150.849,0,-144.829	1/1:41:0,41,0:0:0:41,0:1456,0:-131.33,-12.3422,0,-131.33,-12.3422,-131.33	1/1:42:0,42,0:0:0:42,0:1492,0:-134.57,-12.6433,0,-134.57,-12.6433,-134.57	1/2:214:0,120,94:0:0:120,94:4225,3352:-617.052,-273.106,-236.982,-344.301,0,-316.004	1/2:176:0,115,61:0:0:115,61:4120,2184:-513.959,-177.98,-143.362,-336.336,0,-317.973	1/2:29:0,14,15:0:0:14,15:504,533:-84.662,-43.535,-39.3206,-41.4837,0,-36.9682	1/2:183:0,92,88:0:0:92,88:3287,3134:-523.125,-255.134,-227.44,-267.99,0,-241.499	1/1:85:0,84,0:0:0:84,0:3008,0:-270.535,-25.2865,0,-270.535,-25.2865,-270.535	1/2:81:0,40,40:0:0:40,40:1420,1399:-229.257,-113.569,-101.527,-115.786,0,-103.745	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:7:0,3,4:0:0:3,4:108,142:-20.7094,-11.8947,-10.9916,-9.17208,0,-7.96796	2/2:1:0,0,1:0:0:0,1:0,36:-3.57877,-3.57877,-3.57877,-0.30103,-0.30103,0	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:10:0,5,5:0:0:5,5:174,180:-29.0983,-14.9572,-13.452,-14.494,0,-12.9888	1/2:172:0,82,88:0:0:82,88:2936,3131:-494.227,-254.798,-230.114,-239.435,0,-212.945	1/1:190:0,190,0:0:0:190,0:6779,0:-609.844,-57.1957,0,-609.844,-57.1957,-609.844	1/2:20:0,8,12:0:0:8,12:279,431:-57.9966,-35.3093,-32.901,-23.0393,0,-19.4269	2/2:2:0,0,2:0:0:0,2:0,72:-6.81953,-6.81953,-6.81953,-0.60206,-0.60206,0	1/1:108:0,107,0:0:0:107,0:3807,0:-342.44,-32.2102,0,-342.44,-32.2102,-342.44	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:74:0,31,43:0:0:31,43:1108,1539:-215.483,-125.146,-115.814,-90.6945,0,-77.7502	1/2:44:0,20,23:0:0:20,23:720,815:-125.052,-66.2994,-60.2788,-58.8001,0,-51.8764	1/2:40:0,16,24:0:0:16,24:576,848:-115.966,-68.9638,-64.1473,-47.3585,0,-40.1338	1/1:54:0,54,0:0:0:54,0:1936,0:-174.512,-16.2556,0,-174.512,-16.2556,-174.512	1/2:110:0,41,69:0:0:41,69:1464,2466:-319.574,-200.243,-187.901,-119.687,0,-98.9161	1/1:145:0,142,0:0:0:142,0:5052,0:-454.466,-42.7463,0,-454.466,-42.7463,-454.466	1/1:70:0,67,1:0:0:67,1:2400,36:-215.932,-20.169,0,-212.999,-17.2134,-212.698	1/2:124:0,53,71:0:0:53,71:1892,2517:-359.045,-204.805,-188.851,-154.594,0,-133.221	1/1:86:0,86,0:0:0:86,0:3060,0:-275.62,-25.8886,0,-275.62,-25.8886,-275.62	1/2:5:0,1,4:0:0:1,4:36,144:-15.0281,-12.0906,-11.7896,-3.29724,0,-2.09312	1/1:117:0,116,0:0:0:116,0:4156,0:-373.965,-34.9195,0,-373.965,-34.9195,-373.965	1/1:62:0,62,0:0:0:62,0:2203,0:-198.497,-18.6639,0,-198.497,-18.6639,-198.497	1/2:5:0,2,3:0:0:2,3:72,101:-14.3676,-8.48287,-7.88081,-6.23466,0,-5.33157	1/1:114:0,113,0:0:0:113,0:4001,0:-360.017,-34.0164,0,-360.017,-34.0164,-360.017	1/2:24:0,10,14:0:0:10,14:360,504:-70.7863,-41.4189,-38.4086,-29.727,0,-25.5126	1/2:7:0,4,3:0:0:4,3:144,108:-20.9123,-9.16247,-7.95835,-12.1095,0,-11.2064	1/2:21:0,9,12:0:0:9,12:324,421:-61.0258,-34.585,-31.8757,-26.7966,0,-23.1842	1/2:43:0,20,21:0:0:20,21:694,747:-116.811,-60.5343,-54.5137,-56.2726,0,-49.951	1/2:87:0,36,50:0:0:36,50:1279,1787:-249.613,-145.394,-134.556,-104.268,0,-89.2167	1/2:5:0,4,1:0:0:4,1:144,36:-15.0422,-3.29214,-2.08802,-12.1095,0,-11.8085	1/2:136:0,57,77:0:0:57,77:2023,2735:-387.425,-222.627,-205.468,-164.821,0,-141.642	1/1:120:0,119,0:0:0:119,0:4255,0:-382.749,-35.8226,0,-382.749,-35.8226,-382.749	1/2:63:0,32,31:0:0:32,31:1139,1106:-183.099,-90.2784,-80.6455,-93.1762,0,-83.8443	1/1:60:0,60,0:0:0:60,0:2144,0:-193.226,-18.0618,0,-193.226,-18.0618,-193.226	1/2:113:0,61,51:0:0:61,51:2161,1801:-322.192,-146.162,-127.8,-176.1,0,-160.748	1/1:138:0,136,1:0:0:136,1:4828,36:-434.028,-40.9401,0,-431.095,-38.0073,-430.794	1/1:31:0,31,0:0:0:31,0:1116,0:-100.742,-9.33193,0,-100.742,-9.33193,-100.742	1/1:79:0,77,0:0:0:77,0:2753,0:-247.592,-23.1793,0,-247.592,-23.1793,-247.592	1/2:32:0,17,15:0:0:17,15:599,531:-92.2545,-43.4898,-38.3723,-49.1173,0,-44.6019	1/2:7:0,4,3:0:0:4,3:144,102:-20.3592,-8.60256,-7.39844,-12.1048,0,-11.2017	1/1:65:0,65,0:0:0:65,0:2316,0:-208.666,-19.567,0,-208.666,-19.567,-208.666	1/2:52:0,32,19:0:0:32,19:1129,681:-146.718,-54.7891,-45.1562,-91.9251,0,-86.2055	1/1:109:0,109,0:0:0:109,0:3886,0:-349.912,-32.8123,0,-349.912,-32.8123,-349.912	1/1:141:0,140,0:0:0:140,0:5012,0:-450.865,-42.1442,0,-450.865,-42.1442,-450.865	1/2:207:0,95,111:0:0:95,111:3388,3929:-593.951,-317.837,-289.239,-276.256,0,-242.842	1/1:80:0,78,1:0:0:78,1:2775,36:-249.569,-23.4803,0,-246.649,-20.5556,-246.348	1/2:8:0,4,4:0:0:4,4:140,132:-22.0744,-10.6693,-9.46519,-11.7405,0,-10.5363	1/1:77:0,74,1:0:0:74,1:2643,29:-237.84,-22.2762,0,-235.534,-19.9584,-235.233	1/2:97:0,62,35:0:0:62,35:2204,1236:-279.84,-100.267,-81.6035,-179.924,0,-169.388	1/1:144:0,141,1:0:0:141,1:5050,32:-454.19,-42.4452,0,-451.614,-39.8618,-451.313	1/1:62:0,62,0:0:0:62,0:2220,0:-200.047,-18.6639,0,-200.047,-18.6639,-200.047	1/1:88:0,88,0:0:0:88,0:3143,0:-283.077,-26.4906,0,-283.077,-26.4906,-283.077	1/2:38:0,17,20:0:0:17,20:612,719:-107.858,-57.9199,-52.8024,-49.9366,0,-43.916	1/1:95:0,95,0:0:0:95,0:3364,0:-302.954,-28.5979,0,-302.954,-28.5979,-302.954	1/2:16:0,11,5:0:0:11,5:383,180:-45.6423,-14.6054,-11.2941,-31.3861,0,-29.8809	1/2:61:0,34,26:0:0:34,26:1216,918:-173.122,-73.9636,-63.7285,-99.2031,0,-91.3763	1/1:48:0,48,0:0:0:48,0:1724,0:-155.428,-14.4494,0,-155.428,-14.4494,-155.428	1/2:38:0,24,14:0:0:24,14:860,498:-110.961,-40.8199,-33.5951,-70.4971,0,-66.2827	1/2:79:0,38,41:0:0:38,41:1344,1461:-228.258,-118.796,-107.357,-109.816,0,-97.4736	1/2:40:0,16,24:0:0:16,24:572,853:-116.278,-69.6371,-64.8207,-46.9969,0,-39.7722	1/1:143:0,142,0:0:0:142,0:5040,0:-453.377,-42.7463,0,-453.377,-42.7463,-453.377	1/1:96:0,96,0:0:0:96,0:3439,0:-309.713,-28.8989,0,-309.713,-28.8989,-309.713
chr09	20220619	.	CAA	AAA,AAG	119303	PASS	AB=0.506731,0.489744;ABP=4.23802,5.86105;AC=132,54;AF=0.709677,0.290323;AN=186;AO=4196,1541;CIGAR=1X2M,1X1M1X;DP=5753;DPB=5753.67;DPRA=0,1.14812;EPP=9114.51,3349.25;EPPR=5.18177;GTI=1;LEN=1,3;MEANALT=1.84946,2.20312;MQM=59.6239,43.878;MQMR=60;NS=93;NUMALT=2;ODDS=0.099599;PAIRED=0,0;PAIREDR=0;PAO=0.5,1;PQA=0,27;PQR=0;PRO=0.5;QA=149154,53367;QR=27;RO=1;RPL=0,0;RPP=9114.51,3349.25;RPPR=5.18177;RPR=4196,1541;RUN=1,1;SAF=0,0;SAP=9114.51,3349.25;SAR=4196,1541;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:40:0,12,28:0:0:12,28:432,931:-110.037,-74.7789,-71.1666,-35.6088,0,-27.18	1/1:55:0,55,0:0:0:55,0:1960,0:-176.664,-16.5567,0,-176.664,-16.5567,-176.664	1/1:110:0,109,1:0:0:109,1:3846,36:-345.977,-32.8123,0,-343.047,-29.5241,-342.746	1/1:110:0,110,0:0:0:110,0:3937,0:-354.497,-33.1133,0,-354.497,-33.1133,-354.497	1/2:40:0,25,15:0:0:25,15:900,531:-116.424,-42.9819,-35.4561,-73.7953,0,-69.2798	1/2:19:0,11,8:0:0:11,8:378,286:-53.9943,-23.305,-19.9937,-31.0378,0,-28.6296	1/1:94:0,94,0:0:0:94,0:3322,0:-299.191,-28.2968,0,-299.191,-28.2968,-299.191	1/2:93:0,41,51:0:0:41,51:1439,1775:-258.63,-141.526,-129.184,-117.237,0,-101.884	1/2:97:0,53,44:0:0:53,44:1880,1510:-274.112,-120.937,-104.982,-153.521,0,-140.276	1/1:68:0,68,0:0:0:68,0:2386,0:-214.947,-20.47,0,-214.947,-20.47,-214.947	1/2:27:0,17,10:0:0:17,10:604,343:-76.6363,-27.4095,-22.2919,-49.5688,0,-46.5585	1/1:60:0,60,0:0:0:60,0:2115,0:-190.613,-18.0618,0,-190.613,-18.0618,-190.613	1/2:43:0,26,17:0:0:26,17:932,591:-123.726,-47.704,-39.8772,-76.3707,0,-71.2532	1/2:33:0,14,19:0:0:14,19:500,644:-92.5404,-51.8229,-47.6085,-41.0647,0,-35.3451	1/2:43:0,16,27:0:0:16,27:564,938:-120.936,-75.0099,-70.1934,-46.2738,0,-38.146	1/2:30:0,13,16:0:0:13,16:468,550:-82.0802,-43.9421,-40.0287,-38.1293,0,-33.3129	1/2:21:0,16,5:0:0:16,5:567,169:-60.0573,-13.8684,-9.05196,-46.5279,0,-45.0227	1/2:19:0,10,9:0:0:10,9:347,307:-53.154,-24.9425,-21.9322,-28.5533,0,-25.844	1/1:15:0,15,0:0:0:15,0:527,0:-47.7506,-4.51545,0,-47.7506,-4.51545,-47.7506	1/2:102:0,50,52:0:0:50,52:1786,1832:-292.517,-146.904,-131.852,-145.965,0,-130.311	1/1:76:0,76,0:0:0:76,0:2664,0:-239.901,-22.8783,0,-239.901,-22.8783,-239.901	1/2:89:0,26,63:0:0:26,63:936,2169:-248.549,-172.169,-164.343,-76.7327,0,-57.7678	1/1:76:0,73,2:0:0:73,2:2599,67:-233.849,-21.9752,0,-228.499,-16.57,-227.897	1/2:41:0,10,31:0:0:10,31:360,1079:-115.141,-85.7621,-82.7518,-29.734,0,-20.4021	1/1:96:0,94,2:0:0:94,2:3362,70:-302.236,-28.2968,0,-296.614,-22.3293,-296.012	1/2:110:0,51,58:0:0:51,58:1797,2041:-308.497,-162.347,-146.995,-146.167,0,-128.708	1/2:179:0,86,93:0:0:86,93:3062,3211:-506.542,-257.073,-231.184,-249.818,0,-221.822	1/2:22:0,6,16:0:0:6,16:207,570:-62.5079,-45.6953,-43.8892,-17.1583,0,-12.3419	1/2:151:0,93,58:0:0:93,58:3290,2044:-431.043,-163.079,-135.084,-268.312,0,-250.853	1/2:67:0,44,23:0:0:44,23:1569,789:-190.419,-62.5082,-49.2629,-128.253,0,-121.329	1/2:41:0,18,23:0:0:18,23:639,815:-117.64,-65.5724,-60.1539,-52.4197,0,-45.496	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:5:0,3,2:0:0:3,2:108,72:-14.9554,-6.14012,-5.23703,-9.17208,0,-8.57002	1/1:6:0,6,0:0:0:6,0:212,0:-19.3363,-1.80618,0,-19.3363,-1.80618,-19.3363	1/2:6:0,1,5:0:0:1,5:36,165:-16.4269,-13.4838,-13.1828,-3.29724,0,-1.79209	1/2:9:0,6,3:0:0:6,3:216,108:-26.6606,-9.03275,-7.22657,-17.9843,0,-17.0812	1/2:148:0,75,73:0:0:75,73:2666,2562:-420.312,-203.06,-180.483,-217.6,0,-195.625	1/1:126:0,126,0:0:0:126,0:4489,0:-404.058,-37.9298,0,-404.058,-37.9298,-404.058	1/2:38:0,15,23:0:0:15,23:519,805:-107.062,-64.9063,-60.3908,-42.5014,0,-35.5777	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:84:0,84,0:0:0:84,0:3006,0:-270.412,-25.2865,0,-270.412,-25.2865,-270.412	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/2:116:0,62,54:0:0:62,54:2216,1846:-328.862,-148.199,-129.535,-181.01,0,-164.755	1/2:38:0,18,20:0:0:18,20:648,690:-108.023,-55.1438,-49.7252,-53.2286,0,-47.208	1/2:42:0,11,31:0:0:11,31:387,1095:-119.336,-87.8347,-84.5233,-31.8522,0,-22.5203	1/1:69:0,68,1:0:0:68,1:2440,36:-219.491,-20.47,0,-216.623,-17.2501,-216.322	1/2:83:0,46,36:0:0:46,36:1643,1241:-233.271,-99.326,-85.4786,-133.934,0,-123.096	1/1:132:0,131,1:0:0:131,1:4642,36:-417.576,-39.4349,0,-414.695,-36.1998,-414.394	1/1:71:0,71,0:0:0:71,0:2525,0:-227.489,-21.3731,0,-227.489,-21.3731,-227.489	1/2:112:0,64,47:0:0:64,47:2292,1621:-316.151,-129.288,-110.022,-186.857,0,-172.708	1/1:75:0,74,1:0:0:74,1:2628,36:-236.355,-22.2762,0,-233.487,-19.0562,-233.186	1/2:9:0,7,2:0:0:7,2:252,72:-26.6833,-6.11657,-4.00936,-20.9217,0,-20.3197	1/1:103:0,102,0:0:0:102,0:3625,0:-326.027,-30.7051,0,-326.027,-30.7051,-326.027	1/1:42:0,42,0:0:0:42,0:1504,0:-135.648,-12.6433,0,-135.648,-12.6433,-135.648	1/1:7:0,6,0:0:0:6,0:207,0:-18.6951,-1.80618,0,-18.6951,-1.80618,-18.6951	1/2:100:0,55,45:0:0:55,45:1956,1545:-283.277,-123.924,-107.367,-159.699,0,-146.153	1/2:40:0,15,25:0:0:15,25:540,884:-115.094,-71.028,-66.5125,-44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chr09	20223923	.	A	T	37204.6	PASS	AB=0.522501;ABP=21.0883;AC=57;AF=0.306452;AN=186;AO=2160;CIGAR=1X;DP=6852;DPB=6852;DPRA=1.12805;EPP=4624.16;EPPR=9866.07;GTI=1;LEN=1;MEANALT=1.08197;MQM=59.531;MQMR=59.9328;NS=93;NUMALT=1;ODDS=2.91813;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77256;QR=167529;RO=4685;RPL=8;RPP=4624.16;RPPR=9857.52;RPR=2152;RUN=1;SAF=2160;SAP=4693.39;SAR=0;SRF=4684;SRP=10167.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:19,14:19:676:14:500:-35.4022,0,-51.234	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.003	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.76	0/0:133:131,2:131:4655:2:72:0,-33.2027,-412.276	0/1:23:8,15:8:288:15:531:-41.1982,0,-19.3437	0/1:45:14,31:14:504:31:1116:-87.1972,0,-32.1517	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.743	0/1:117:57,60:57:2032:60:2151:-158.388,0,-147.932	0/1:91:49,42:49:1760:42:1508:-108.581,0,-131.29	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:72:36,36:36:1292:36:1296:-95.2202,0,-94.9096	0/0:119:119,0:119:4276:0:0:0,-35.8226,-384.995	0/1:73:29,44:29:1044:44:1584:-120.86,0,-72.2996	0/1:73:43,30:43:1548:30:1067:-74.3562,0,-117.638	0/1:55:29,26:29:1025:26:936:-68.0028,0,-76.004	0/1:61:27,34:27:972:34:1220:-91.7394,0,-69.4305	0/1:39:22,17:22:762:17:608:-43.277,0,-57.1549	0/1:38:24,14:24:864:14:504:-34.259,0,-66.6434	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.182	0/1:128:56,72:56:2012:72:2561:-192.201,0,-142.821	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/1:35:10,25:10:360:25:891:-69.9494,0,-22.2083	0/0:70:70,0:70:2463:0:0:0,-21.0721,-221.917	0/1:48:27,21:27:968:21:743:-52.7439,0,-72.9879	0/0:79:78,1:78:2800:1:36:0,-20.1831,-248.512	0/1:168:54,114:54:1910:114:4088:-316.007,0,-121.601	0/1:170:89,80:89:3192:80:2851:-205.674,0,-236.417	0/1:23:14,9:14:489:9:324:-22.5822,0,-37.4152	0/1:168:83,85:83:2976:85:3019:-221.358,0,-217.499	0/1:99:44,55:44:1569:55:1980:-148.196,0,-111.698	0/1:77:37,40:37:1328:40:1423:-105.175,0,-96.6429	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:10:3,7:3:104:7:252:-20.0187,0,-6.69251	0/1:17:4,13:4:144:13:468:-37.3339,0,-8.19611	0/1:160:89,70:89:3185:70:2492:-176.261,0,-238.783	0/0:63:63,0:63:2230:0:0:0,-18.9649,-200.956	0/1:63:30,33:30:1080:33:1184:-87.8871,0,-78.5484	.:.:.:.:.:.:.:.	0/0:98:98,0:98:3509:0:0:0,-29.5009,-316.018	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:99:48,51:48:1709:51:1832:-135.345,0,-124.221	0/1:72:29,42:29:1044:42:1503:-113.824,0,-72.5418	0/1:66:38,28:38:1368:28:990:-69.5447,0,-103.553	0/0:75:75,0:75:2653:0:0:0,-22.5772,-239.013	0/1:143:86,57:86:3061:57:2033:-140.192,0,-232.663	0/0:158:155,3:155:5534:3:108:0,-37.4876,-488.063	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/1:173:95,78:95:3378:78:2799:-200.051,0,-252.156	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/1:3:2,1:2:72:1:36:-2.69259,0,-5.93363	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.5	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:113:41,71:41:1464:71:2543:-194.99,0,-97.71	0/1:30:12,18:12:428:18:644:-49.2468,0,-29.8279	0/1:5:2,3:2:72:3:108:-8.56908,0,-5.33157	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:73:35,36:35:1226:36:1296:-95.1878,0,-88.9263	0/1:86:46,40:46:1641:40:1440:-104.004,0,-122.07	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:112:52,60:52:1872:60:2143:-159.401,0,-135.04	0/1:138:72,66:72:2580:66:2372:-172.193,0,-190.907	0/1:86:39,47:39:1404:47:1677:-125.16,0,-100.771	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/1:98:47,51:47:1692:51:1793:-131.827,0,-123.065	0/1:191:77,114:77:2684:114:4083:-310.137,0,-184.302	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:47:29,18:29:1044:18:648:-44.4463,0,-80.1264	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3577	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/1:75:26,49:26:932:49:1737:-134.032,0,-61.6216	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.123	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.128	0/1:94:33,61:33:1154:61:2188:-168.864,0,-75.8654	0/0:65:64,1:64:2296:1:36:0,-15.9687,-203.303	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.539	0/1:88:37,51:37:1328:51:1830:-138.478,0,-93.3179	0/0:97:96,0:96:3429:0:0:0,-28.8989,-308.462	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/1:40:21,19:21:741:19:684:-49.8491,0,-54.9704	0/0:127:126,1:126:4513:1:36:0,-34.6325,-402.735	0/1:32:17,15:17:612:15:540:-39.2504,0,-45.7805	0/1:83:41,42:41:1472:42:1504:-110.426,0,-107.777	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/1:49:28,21:28:1008:21:748:-52.8902,0,-76.2859	0/1:132:67,65:67:2412:65:2320:-169.282,0,-177.6	0/1:54:19,35:19:680:35:1252:-96.7248,0,-45.2735	0/0:85:85,0:85:3018:0:0:0,-25.5875,-271.849	0/0:114:114,0:114:4100:0:0:0,-34.3174,-369.183
chr09	20281783	.	G	A	27599.9	PASS	AB=0.440717;ABP=122.216;AC=94;AF=0.505376;AN=186;AO=1760;CIGAR=1X;DP=3969;DPB=3969;DPRA=17.4242;EPP=3824.8;EPPR=4799.79;GTI=12;LEN=1;MEANALT=1;MQM=56.9881;MQMR=21.7782;NS=93;NUMALT=1;ODDS=0.478584;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62820;QR=79098;RO=2209;RPL=0;RPP=3824.8;RPPR=4799.79;RPR=1760;RUN=1;SAF=1760;SAP=3824.8;SAR=0;SRF=2209;SRP=4799.79;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:4,3:4:144:3:108:-7.95758,0,-5.61315	0/1:32:11,21:11:392:21:752:-58.2019,0,-11.2151	0/1:34:11,23:11:396:23:824:-64.0654,0,-11.0644	0/1:59:33,26:33:1188:26:936:-66.783,0,-47.2971	0/1:30:10,20:10:360:20:712:-55.3343,0,-10.7479	1/1:31:4,27:4:144:27:961:-78.8931,-1.61157,0	0/1:46:26,20:26:928:20:720:-51.2675,0,-37.4127	0/1:57:38,19:38:1368:19:659:-41.9434,0,-54.4112	0/0:17:16,1:16:576:1:36:0,-1.52294,-26.6609	0/1:18:4,14:4:144:14:500:-39.9122,0,-2.65912	0/1:55:34,21:34:1216:21:741:-50.2955,0,-50.335	0/1:63:52,11:52:1849:11:396:-16.9808,0,-78.69	0/1:80:59,21:59:2109:21:741:-42.8621,0,-86.7532	0/1:61:42,19:42:1484:19:684:-43.4859,0,-64.2156	0/1:65:50,15:50:1796:15:536:-29.0011,0,-79.4679	0/1:48:31,17:31:1112:17:612:-40.9358,0,-46.5688	0/1:41:8,33:8:288:33:1184:-94.002,0,-2.88984	0/1:45:28,17:28:1008:17:612:-41.5204,0,-39.2442	0/1:20:9,11:9:324:11:396:-29.9202,0,-11.9713	0/1:41:21,20:21:752:20:701:-50.525,0,-29.0283	0/1:37:27,10:27:972:10:341:-19.8665,0,-42.0435	0/1:36:17,19:17:612:19:672:-49.9688,0,-22.7834	0/1:21:17,4:17:608:4:144:-6.99034,0,-28.0414	0/1:32:17,15:17:608:15:536:-38.9195,0,-23.9656	0/1:27:21,6:21:717:6:212:-11.2885,0,-32.4781	0/1:65:15,50:15:540:50:1784:-141.204,0,-10.1239	0/1:84:46,38:46:1656:38:1345:-96.0038,0,-65.0529	0/1:14:9,5:9:309:5:180:-12.2603,0,-13.3817	0/1:74:51,23:51:1832:23:824:-52.1721,0,-78.0397	0/1:49:23,26:23:828:26:906:-67.0446,0,-30.4838	0/1:55:24,31:24:856:31:1108:-83.2145,0,-31.2869	0/1:5:1,4:1:36:4:136:-11.066,0,-0.678001	0/1:4:2,2:2:72:2:72:-5.62935,0,-2.94387	0/1:6:2,4:2:72:4:144:-11.4888,0,-2.15833	0/0:2:2,0:2:72:0:0:0,-0.60206,-3.96451	0/0:3:3,0:3:108:0:0:0,-0.90309,-5.84244	0/1:171:115,56:115:4117:56:2012:-129.809,0,-174.528	0/1:55:32,23:32:1114:23:813:-56.2275,0,-46.3326	0/1:49:22,27:22:792:27:964:-72.2375,0,-26.7726	0/1:3:1,2:1:36:2:68:-5.55234,0,-1.28006	0/1:32:14,18:14:504:18:644:-48.6307,0,-18.0055	0/1:47:29,18:29:1044:18:638:-43.3026,0,-42.7012	0/1:26:12,14:12:432:14:500:-37.4077,0,-15.9696	0/1:47:25,22:25:896:22:788:-57.0882,0,-35.1688	0/1:46:38,8:38:1368:8:288:-12.4168,0,-61.0339	0/1:30:17,13:17:612:13:468:-33.3984,0,-24.6763	0/1:55:37,18:37:1317:18:644:-41.6755,0,-52.8772	0/1:94:51,43:51:1836:43:1540:-110.408,0,-72.2969	0/1:59:28,31:28:1008:31:1108:-82.193,0,-37.4729	0/1:39:10,29:10:356:29:999:-77.8554,0,-8.10439	0/1:58:14,44:14:500:44:1584:-125.372,0,-9.98514	1/1:5:0,5:0:0:5:180:-16.55,-1.50515,0	0/1:52:24,28:24:864:28:1004:-74.9316,0,-29.6253	0/1:24:13,11:13:464:11:396:-28.7494,0,-18.6872	0/1:4:1,3:1:36:3:104:-8.49038,0,-0.882465	0/1:20:11,9:11:381:9:324:-23.4694,0,-15.3754	0/1:15:7,8:7:252:8:288:-21.7253,0,-9.45671	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:46:20,26:20:720:26:917:-68.7688,0,-25.4055	0/1:118:73,45:73:2624:45:1612:-109.83,0,-108.19	.:.:.:.:.:.:.:.	0/1:53:32,21:32:1148:21:756:-52.4122,0,-47.1165	0/1:45:20,25:20:720:25:881:-66.0489,0,-25.9687	0/1:29:16,13:16:576:13:464:-33.3484,0,-23.0983	0/1:45:27,18:27:972:18:648:-44.9933,0,-39.7225	0/1:48:18,30:18:648:30:1076:-82.5561,0,-21.1359	0/1:31:10,21:10:356:21:756:-59.0047,0,-10.5126	0/1:43:33,10:33:1184:10:356:-19.3842,0,-52.0909	0/1:24:9,15:9:324:15:540:-41.5781,0,-9.88528	0/1:61:30,31:30:1046:31:1112:-82.0248,0,-40.1724	0/1:12:8,4:8:288:4:144:-9.65282,0,-12.3246	0/1:32:8,24:8:288:24:864:-68.3519,0,-5.59911	0/1:43:38,5:38:1356:5:180:-3.58581,0,-58.5727	0/1:41:26,15:26:932:15:521:-34.8513,0,-38.9399	0/1:54:38,16:38:1360:16:576:-35.8682,0,-58.7516	0/1:58:19,39:19:680:39:1373:-105.692,0,-18.4118	0/1:39:19,20:19:684:20:716:-52.9601,0,-24.1491	0/1:4:2,2:2:72:2:72:-5.62556,0,-2.76039	0/1:29:9,20:9:324:20:715:-55.7955,0,-9.34252	0/1:35:27,8:27:972:8:288:-15.7043,0,-40.4639	0/1:72:25,47:25:870:47:1676:-129.314,0,-27.0577	0/1:90:53,37:53:1900:37:1324:-92.2372,0,-77.131	0/1:42:27,15:27:968:15:540:-36.2876,0,-41.1165	0/1:29:19,10:19:684:10:356:-23.6468,0,-28.8203	0/1:119:84,35:84:3020:35:1252:-77.1406,0,-129.333	0/1:31:18,13:18:633:13:468:-33.0791,0,-24.4205	0/1:62:44,18:44:1584:18:644:-39.5635,0,-64.5221	0/1:58:37,21:37:1332:21:752:-50.4781,0,-52.4065	0/1:39:15,24:15:540:24:860:-65.8772,0,-17.7756	0/1:66:34,32:34:1220:32:1148:-83.505,0,-47.3908	0/1:69:30,39:30:1076:39:1404:-105.826,0,-38.7132	0/1:20:11,9:11:396:9:324:-23.351,0,-16.0689	0/1:81:61,20:61:2196:20:720:-40.7343,0,-96.1183
chr09	20351667	.	AA	GA,GC	186149	PASS	AB=0.68285,0.315427;ABP=1013.91,1033.06;AC=143,45;AF=0.760638,0.239362;AN=188;AO=7901,1127;CIGAR=1X1M,2X;DP=9037;DPB=9037;DPRA=0,0.695706;EPP=17159.8,2450.26;EPPR=0;GTI=10;LEN=1,2;MEANALT=1.65957,2.13208;MQM=31.353,27.7152;MQMR=0;NS=94;NUMALT=2;ODDS=2380.33;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=244462,39387;QR=0;RO=0;RPL=3840,854;RPP=16.4335,653.413;RPPR=0;RPR=4061,273;RUN=1,1;SAF=3840,854;SAP=16.4335,653.413;SAR=4061,273;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:113:0,113,0:0:0:113,0:3516,0:-288.029,-34.0164,0,-288.029,-34.0164,-288.029	1/1:94:0,94,0:0:0:94,0:2811,0:-229.459,-28.2968,0,-229.459,-28.2968,-229.459	1/1:154:0,153,0:0:0:153,0:4669,0:-381.112,-46.0576,0,-381.112,-46.0576,-381.112	1/1:299:0,299,0:0:0:299,0:9482,0:-778.342,-90.008,0,-778.342,-90.008,-778.342	1/1:77:0,68,9:0:0:68,9:2080,319:-169.281,-20.47,0,-149.929,-0.844868,-147.219	1/2:42:0,32,9:0:0:32,9:973,322:-89.139,-19.3887,-9.75576,-69.7158,0,-67.0065	1/2:57:0,49,8:0:0:49,8:1517,275:-126.982,-17.1595,-2.40899,-110.092,0,-107.684	1/1:171:0,170,1:0:0:170,1:5239,36:-426.538,-51.1751,0,-424.377,-48.7399,-424.076	1/2:119:0,87,32:0:0:87,32:2718,1114:-264.283,-68.454,-42.2644,-196.103,0,-186.47	1/1:105:0,105,0:0:0:105,0:3383,0:-279.149,-31.6082,0,-279.149,-31.6082,-279.149	1/2:36:0,26,10:0:0:26,10:775,341:-76.5908,-21.3791,-13.5523,-55.4801,0,-52.4698	1/1:129:0,129,0:0:0:129,0:3963,0:-322.796,-38.8329,0,-322.796,-38.8329,-322.796	1/1:98:0,98,0:0:0:98,0:3035,0:-248.113,-29.5009,0,-248.113,-29.5009,-248.113	1/2:49:0,31,18:0:0:31,18:919,616:-103.596,-38.3121,-28.9802,-65.5523,0,-60.1337	1/2:71:0,47,23:0:0:47,23:1472,820:-155.348,-49.5511,-35.4027,-105.769,0,-98.8453	1/2:43:0,25,18:0:0:25,18:765,624:-93.4535,-38.4466,-30.9209,-55.2797,0,-49.8612	1/2:48:0,38,10:0:0:38,10:1113,358:-101.259,-22.1712,-10.7321,-79.3622,0,-76.3519	1/2:42:0,35,7:0:0:35,7:1074,250:-91.478,-15.374,-4.83791,-76.3775,0,-74.2703	1/1:32:0,32,0:0:0:32,0:964,0:-78.7054,-9.63296,0,-78.7054,-9.63296,-78.7054	1/2:203:0,133,70:0:0:133,70:4296,2429:-460.761,-148.318,-108.281,-312.72,0,-291.648	1/1:216:0,215,1:0:0:215,1:6740,36:-552.899,-64.7215,0,-550.738,-62.2863,-550.437	1/2:67:0,23,44:0:0:23,44:735,1540:-144.83,-91.7102,-84.7865,-53.4012,0,-40.1559	1/2:87:0,60,27:0:0:60,27:1898,935:-193.848,-57.0091,-38.9473,-137.112,0,-128.985	1/1:102:0,102,0:0:0:102,0:3155,0:-258.455,-30.7051,0,-258.455,-30.7051,-258.455	1/1:119:0,119,0:0:0:119,0:3642,0:-297.69,-35.8226,0,-297.69,-35.8226,-297.69	1/2:254:0,145,109:0:0:145,109:4443,3825:-547.575,-229.58,-185.931,-318.266,0,-285.454	1/2:193:0,136,56:0:0:136,56:4212,1918:-418.084,-118.028,-77.0876,-300.054,0,-283.196	1/2:37:0,23,14:0:0:23,14:711,475:-80.2595,-29.4116,-22.4879,-51.1181,0,-46.9037	1/2:260:0,156,103:0:0:156,103:4745,3631:-552.815,-212.934,-165.974,-339.893,0,-308.886	1/1:114:0,114,0:0:0:114,0:3529,0:-290.584,-34.3174,0,-290.584,-34.3174,-290.584	1/2:59:0,44,15:0:0:44,15:1391,529:-132.591,-32.3232,-19.0779,-100.543,0,-96.0272	1/1:20:0,20,0:0:0:20,0:629,0:-51.5224,-6.0206,0,-51.5224,-6.0206,-51.5224	1/2:18:0,10,8:0:0:10,8:308,282:-39.468,-17.4612,-14.4509,-22.2816,0,-19.8734	1/1:15:0,14,1:0:0:14,1:376,36:-30.2231,-4.21442,0,-28.0593,-1.77925,-27.7583	1/1:24:0,24,0:0:0:24,0:660,0:-53.7458,-7.22472,0,-53.7458,-7.22472,-53.7458	1/2:51:0,44,7:0:0:44,7:1288,252:-106.924,-15.4045,-2.15916,-91.7917,0,-89.6844	1/2:245:0,129,115:0:0:129,115:3980,4025:-523.568,-238.274,-199.441,-285.31,0,-250.691	1/1:106:0,106,0:0:0:106,0:3151,0:-257.111,-31.9092,0,-257.111,-31.9092,-257.111	1/2:44:0,29,14:0:0:29,14:877,499:-92.488,-30.1402,-21.4103,-62.3275,0,-58.1131	1/2:2:0,1,1:0:0:1,1:29,28:-4.24157,-2.19828,-1.89725,-2.29821,0,-1.99718	1/1:142:0,141,1:0:0:141,1:4423,36:-362.607,-42.4452,0,-360.446,-40.0101,-360.145	1/1:53:0,53,0:0:0:53,0:1588,0:-128.67,-15.9546,0,-128.67,-15.9546,-128.67	1/2:94:0,76,18:0:0:76,18:2357,640:-208.19,-38.967,-16.0888,-169.497,0,-164.079	1/2:77:0,61,16:0:0:61,16:1849,567:-166.735,-34.6961,-16.3332,-132.312,0,-127.495	1/2:61:0,41,20:0:0:41,20:1265,709:-133.153,-43.3123,-30.9701,-90.1148,0,-84.0942	1/1:135:0,135,0:0:0:135,0:4478,0:-369.997,-40.6391,0,-369.997,-40.6391,-369.997	1/2:106:0,84,22:0:0:84,22:2590,781:-233.715,-48.1047,-22.8181,-185.886,0,-179.263	1/1:149:0,149,0:0:0:149,0:4607,0:-376.183,-44.8535,0,-376.183,-44.8535,-376.183	1/1:90:0,90,0:0:0:90,0:2799,0:-228.733,-27.0927,0,-228.733,-27.0927,-228.733	1/2:92:0,68,24:0:0:68,24:2095,836:-201.314,-50.5678,-30.0977,-151.016,0,-143.791	1/1:132:0,132,0:0:0:132,0:4130,0:-337.425,-39.736,0,-337.425,-39.736,-337.425	1/1:6:0,6,0:0:0:6,0:143,0:-11.458,-1.80618,0,-11.458,-1.80618,-11.458	1/1:139:0,139,0:0:0:139,0:4189,0:-340.553,-41.8432,0,-340.553,-41.8432,-340.553	1/1:49:0,49,0:0:0:49,0:1585,0:-130.522,-14.7505,0,-130.522,-14.7505,-130.522	1/1:11:0,11,0:0:0:11,0:308,0:-24.9953,-3.31133,0,-24.9953,-3.31133,-24.9953	1/1:158:0,158,0:0:0:158,0:4939,0:-404.407,-47.5627,0,-404.407,-47.5627,-404.407	1/1:50:0,45,4:0:0:45,4:1424,142:-116.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chr09	20351708	.	A	C	14726.3	PASS	AB=0.436727;ABP=90.1197;AC=47;AF=0.255435;AN=184;AO=1106;CIGAR=1X;DP=5285;DPB=5285;DPRA=1.05465;EPP=2404.66;EPPR=9071.08;GTI=3;LEN=1;MEANALT=1.03774;MQM=51.9385;MQMR=29.0551;NS=92;NUMALT=1;ODDS=0.322358;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39321;QR=149514;RO=4176;RPL=1106;RPP=2404.66;RPPR=9071.08;RPR=0;RUN=1;SAF=0;SAP=2404.66;SAR=1106;SRF=0;SRP=9071.08;SRR=4176;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1544:0:0:0,-12.9443,-109.643	0/0:71:69,2:69:2484:2:72:0,-14.5364,-170.926	0/0:83:83,0:83:2938:0:0:0,-24.9855,-209.937	0/0:131:127,4:127:4544:4:144:0,-26.1213,-300.98	0/1:60:38,22:38:1364:22:769:-51.4668,0,-78.7144	0/1:28:14,14:14:504:14:504:-37.2693,0,-27.2324	0/1:61:30,31:30:1076:31:1116:-82.3889,0,-56.4889	0/0:88:88,0:88:3140:0:0:0,-26.4906,-225.465	0/1:63:28,35:28:1004:35:1260:-94.7406,0,-52.5203	0/0:41:41,0:41:1457:0:0:0,-12.3422,-101	0/1:35:21,14:21:748:14:484:-33.3525,0,-42.5092	0/0:65:65,0:65:2340:0:0:0,-19.5669,-165.502	0/0:43:43,0:43:1548:0:0:0,-12.9443,-109.874	0/1:42:22,20:22:788:20:720:-52.4855,0,-43.4651	0/1:36:23,13:23:828:13:464:-30.7669,0,-47.3007	0/1:30:13,17:13:468:17:612:-46.3825,0,-24.5325	0/1:46:33,13:33:1188:13:434:-25.5062,0,-71.6584	0/1:38:18,20:18:648:20:716:-53.327,0,-34.9235	0/0:22:22,0:22:773:0:0:0,-6.62266,-57.5082	0/1:88:47,41:47:1692:41:1461:-105.293,0,-90.8624	0/0:93:93,0:93:3313:0:0:0,-27.9958,-235.358	0/1:28:12,16:12:428:16:576:-30.8365,0,-20.4425	0/1:42:26,16:26:928:16:576:-39.5071,0,-52.7294	0/0:50:50,0:50:1792:0:0:0,-15.0515,-127.756	0/0:68:68,0:68:2428:0:0:0,-20.47,-173.268	0/1:160:92,68:92:3300:68:2417:-117.125,0,-179.153	0/1:129:69,60:69:2484:60:2148:-154.755,0,-136.226	0/1:22:13,9:13:468:9:324:-22.8832,0,-25.7178	0/1:166:95,71:95:3392:71:2472:-121.046,0,-184.348	0/0:61:61,0:61:2154:0:0:0,-18.3628,-154.089	0/1:43:25,18:25:900:18:625:-43.6282,0,-46.2227	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.3142	.:.:.:.:.:.:.:.	0/0:7:7,0:7:248:0:0:0,-2.10721,-19.6284	0/0:8:8,0:8:284:0:0:0,-2.40824,-20.8977	0/1:14:11,3:11:396:3:100:-5.11602,0,-22.7655	0/1:135:71,64:71:2544:64:2285:-112.399,0,-134.365	0/0:66:66,0:66:2360:0:0:0,-19.868,-169.555	0/1:37:22,15:22:788:15:540:-37.3681,0,-45.4972	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.1953	0/0:67:67,0:67:2404:0:0:0,-20.169,-166.183	0/0:25:25,0:25:900:0:0:0,-7.52575,-63.3341	0/1:65:42,23:42:1512:23:824:-54.9164,0,-88.0873	0/1:60:37,23:37:1332:23:820:-56.0607,0,-74.7797	0/1:36:23,13:23:828:13:453:-30.2625,0,-45.5423	0/0:41:41,0:41:1468:0:0:0,-12.3422,-101.988	0/1:80:44,36:44:1576:36:1269:-90.4202,0,-86.7834	0/0:83:82,1:82:2932:1:36:0,-21.3872,-196.126	0/0:53:53,0:53:1900:0:0:0,-15.9546,-134.721	0/1:63:41,22:41:1468:22:788:-52.2799,0,-83.2343	0/0:80:80,0:80:2856:0:0:0,-24.0824,-194.383	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.7362	0/0:96:96,0:96:3432:0:0:0,-28.8989,-243.163	0/0:20:20,0:20:720:0:0:0,-6.0206,-49.7466	0/0:7:7,0:7:252:0:0:0,-2.10721,-16.3535	0/0:75:75,0:75:2684:0:0:0,-22.5772,-190.055	0/1:28:23,5:23:824:5:180:-8.12322,0,-50.4516	0/1:9:5,4:5:180:4:144:-7.09055,0,-11.9538	0/1:3:1,2:1:36:2:72:-5.03144,0,-1.83311	0/1:38:18,20:18:644:20:720:-53.6896,0,-35.1601	0/1:60:25,35:25:900:35:1256:-95.2835,0,-45.9334	.:.:.:.:.:.:.:.	0/1:91:55,36:55:1972:36:1292:-61.5052,0,-107.236	0/0:95:93,2:93:3336:2:72:0,-21.7611,-222.361	0/1:48:15,33:15:532:33:1158:-90.0731,0,-24.977	0/0:47:47,0:47:1677:0:0:0,-14.1484,-119.474	0/1:74:53,20:53:1904:20:705:-41.4899,0,-110.182	0/0:37:37,0:37:1320:0:0:0,-11.1381,-93.0875	0/0:27:27,0:27:972:0:0:0,-8.12781,-67.5501	0/0:39:39,0:39:1396:0:0:0,-11.7402,-100.355	0/1:52:31,21:31:1112:21:756:-35.5291,0,-62.5009	0/1:17:12,5:12:432:5:180:-11.4346,0,-21.58	0/0:63:63,0:63:2268:0:0:0,-18.9649,-162.051	0/1:29:15,14:15:536:14:489:-35.609,0,-29.8809	0/0:114:114,0:114:4096:0:0:0,-34.3174,-290.86	0/0:93:92,1:92:3304:1:36:0,-24.3975,-224.876	0/1:75:46,29:46:1640:29:1036:-70.9767,0,-94.8321	0/0:101:101,0:101:3624:0:0:0,-30.404,-253.928	0/1:20:16,4:16:576:4:144:-7.29302,0,-35.3519	0/0:66:66,0:66:2368:0:0:0,-19.868,-168.448	0/1:83:51,32:51:1832:32:1143:-78.1882,0,-105.751	0/0:135:133,2:133:4741:2:72:0,-33.8023,-319.385	0/0:94:94,0:94:3372:0:0:0,-28.2968,-235.091	0/0:41:41,0:41:1464:0:0:0,-12.3422,-103.372	0/1:55:24,29:24:860:29:1013:-75.1989,0,-43.9673	0/0:133:133,0:133:4726:0:0:0,-40.037,-327.821	0/1:22:10,12:10:360:12:432:-32.5903,0,-18.0985	0/1:70:33,37:33:1175:37:1300:-96.2264,0,-61.0668	0/0:50:50,0:50:1792:0:0:0,-15.0515,-124.306	0/1:36:19,17:19:680:17:612:-44.5764,0,-38.8517	0/1:54:32,22:32:1148:22:788:-54.9892,0,-64.7412	0/1:31:12,19:12:424:19:676:-51.8361,0,-20.1776	0/0:76:76,0:76:2724:0:0:0,-22.8783,-190.059	0/0:76:76,0:76:2732:0:0:0,-22.8783,-188.955
chr09	20367938	.	G	C	26742.1	PASS	AB=0.508333;ABP=4.89224;AC=51;AF=0.274194;AN=186;AO=1594;CIGAR=1X;DP=6114;DPB=6114;DPRA=0.916726;EPP=3464.34;EPPR=9809.38;GTI=0;LEN=1;MEANALT=1.03509;MQM=59.9849;MQMR=59.9798;NS=93;NUMALT=1;ODDS=5.04702;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57020;QR=161292;RO=4516;RPL=0;RPP=3464.34;RPPR=9809.38;RPR=1594;RUN=1;SAF=1594;SAP=3464.34;SAR=0;SRF=4516;SRP=9809.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:73:72,0:72:2584:0:0:0,-21.6742,-232.449	0/0:128:128,0:128:4569:0:0:0,-38.5318,-411.375	0/0:109:109,0:109:3878:0:0:0,-32.8123,-349.213	0/1:31:23,8:23:816:8:288:-16.9355,0,-64.4298	0/1:40:14,26:14:504:26:913:-70.4428,0,-33.6569	0/1:91:52,39:52:1864:39:1400:-98.9055,0,-140.646	0/0:105:105,0:105:3723:0:0:0,-31.6081,-335.269	0/1:72:29,43:29:1044:43:1525:-115.867,0,-72.6006	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:60:26,34:26:936:34:1220:-92.045,0,-66.4977	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.383	0/1:103:51,52:51:1832:52:1864:-137.022,0,-134.155	0/1:62:28,34:28:1004:34:1211:-90.6317,0,-72.012	0/1:57:32,25:32:1144:25:900:-64.1623,0,-86.1108	0/1:90:58,32:58:2088:32:1152:-76.8965,0,-161.097	0/1:72:40,32:40:1440:32:1152:-82.316,0,-108.224	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.784	0/1:69:40,29:40:1436:29:1044:-73.5037,0,-108.767	0/0:84:82,2:82:2940:2:72:0,-18.4498,-257.997	0/1:65:19,46:19:684:46:1648:-129.042,0,-42.3234	0/1:54:25,29:25:888:29:1036:-77.2983,0,-63.9834	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.425	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:97:55,42:55:1961:42:1500:-106.095,0,-147.564	0/1:92:45,47:45:1616:47:1684:-124.152,0,-118.035	0/1:27:11,16:11:396:16:567:-43.2329,0,-27.8549	0/1:79:39,40:39:1389:40:1432:-105.396,0,-101.526	0/0:72:70,2:70:2497:2:72:0,-14.8374,-218.145	0/1:69:38,31:38:1364:31:1107:-79.1697,0,-102.062	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/1:16:9,7:9:316:7:248:-17.8477,0,-23.9624	0/1:189:98,91:98:3505:91:3251:-235.916,0,-257.575	0/0:140:140,0:140:4998:0:0:0,-42.1442,-449.965	0/1:62:21,41:21:756:41:1472:-114.112,0,-49.7034	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:59:58,1:58:2042:1:36:0,-14.1625,-180.45	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:46:20,26:20:720:26:932:-70.3515,0,-51.2814	0/1:79:40,39:40:1410:39:1396:-102.158,0,-103.412	0/1:55:24,31:24:860:31:1112:-83.8265,0,-61.1652	0/0:95:95,0:95:3381:0:0:0,-28.5978,-304.505	0/1:73:23,50:23:828:50:1792:-139.587,0,-52.8689	0/0:51:50,1:50:1776:1:36:0,-11.7543,-156.525	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/1:50:28,22:28:1004:22:784:-55.8324,0,-75.6244	0/0:103:102,1:102:3668:1:36:0,-27.4078,-326.724	0/1:17:5,12:5:180:12:422:-33.1968,0,-11.4346	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:22:12,10:12:428:10:360:-26.1216,0,-32.2361	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.873	0/1:61:26,34:26:916:34:1220:-91.6852,0,-64.3351	.:.:.:.:.:.:.:.	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/1:38:14,24:14:500:24:864:-66.6434,0,-33.897	0/1:126:69,57:69:2476:57:2044:-146.302,0,-185.164	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:114:54,59:54:1917:59:2112:-155.973,0,-138.429	0/0:113:113,0:113:4014:0:0:0,-34.0164,-361.448	0/1:35:13,22:13:468:22:788:-60.7087,0,-31.9236	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:98:57,41:57:2025:41:1452:-101.474,0,-153.02	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.432	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:54:53,0:53:1885:0:0:0,-15.9546,-169.567	0/1:99:39,60:39:1404:60:2140:-163.066,0,-96.8573	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.914	0/1:57:27,30:27:949:30:1076:-79.9941,0,-68.5641	0/0:140:140,0:140:5012:0:0:0,-42.1442,-451.199	0/0:56:56,0:56:1997:0:0:0,-16.8577,-180.002	0/1:128:70,58:70:2497:58:2074:-148.398,0,-186.449	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.346	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:42:32,10:32:1133:10:356:-19.738,0,-89.6334	0/0:131:130,1:130:4641:1:36:0,-35.8367,-414.254	0/0:86:86,0:86:3081:0:0:0,-25.8886,-277.516	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:65:33,32:33:1180:32:1144:-83.7026,0,-86.9411	0/0:119:119,0:119:4244:0:0:0,-35.8226,-382.138	0/1:29:15,14:15:536:14:500:-36.6063,0,-39.8449	0/1:72:38,34:38:1345:34:1211:-87.622,0,-99.674	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/1:43:17,26:17:597:26:936:-71.6152,0,-41.1118	0/1:147:74,73:74:2641:73:2611:-190.986,0,-193.684	0/1:58:19,39:19:680:39:1392:-108.119,0,-44.0694	0/0:60:60,0:60:2125:0:0:0,-18.0618,-191.517	0/0:85:85,0:85:3029:0:0:0,-25.5875,-272.839
chr09	20367990	.	T	C	25149.6	PASS	AB=0.509514;ABP=5.4069;AC=51;AF=0.274194;AN=186;AO=1561;CIGAR=1X;DP=5954;DPB=5954;DPRA=0.884413;EPP=3392.68;EPPR=9531.43;GTI=0;LEN=1;MEANALT=1.08929;MQM=59.991;MQMR=59.984;NS=93;NUMALT=1;ODDS=2.04924;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54665;QR=155221;RO=4388;RPL=1561;RPP=3392.68;RPPR=9522.75;RPR=0;RUN=1;SAF=1561;SAP=3392.68;SAR=0;SRF=4387;SRP=9522.75;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.272	0/0:73:73,0:73:2568:0:0:0,-21.9752,-231.37	0/0:125:125,0:125:4423:0:0:0,-37.6287,-398.244	0/0:104:104,0:104:3696:0:0:0,-31.3071,-332.842	0/1:30:22,8:22:784:8:269:-15.5061,0,-61.853	0/1:38:13,25:13:468:25:854:-65.7289,0,-31.0205	0/1:92:52,40:52:1868:40:1404:-98.9596,0,-140.705	0/0:103:103,0:103:3645:0:0:0,-31.0061,-328.256	0/1:73:30,43:30:1064:43:1502:-113.494,0,-74.0965	0/0:71:71,0:71:2501:0:0:0,-21.3731,-225.34	0/1:60:23,37:23:820:37:1291:-98.4284,0,-56.0607	0/0:66:66,0:66:2313:0:0:0,-19.868,-208.428	0/0:68:68,0:68:2399:0:0:0,-20.47,-216.168	0/1:101:51,50:51:1807:50:1743:-126.718,0,-132.507	0/1:62:27,35:27:945:35:1203:-89.903,0,-66.6981	0/1:58:33,25:33:1150:25:884:-62.4183,0,-86.3447	0/1:88:57,31:57:1996:31:1091:-72.0075,0,-153.421	0/1:72:40,32:40:1410:32:1134:-80.6939,0,-105.522	0/0:40:40,0:40:1407:0:0:0,-12.0412,-126.926	0/1:68:40,28:40:1416:28:984:-68.402,0,-107.265	0/0:81:78,3:78:2722:3:95:0,-15.5192,-236.357	0/1:63:19,44:19:672:44:1534:-119.383,0,-41.8419	0/1:51:23,28:23:809:28:984:-73.5209,0,-57.7758	0/0:87:87,0:87:3068:0:0:0,-26.1896,-276.347	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/1:96:55,40:55:1968:40:1375:-95.0829,0,-148.437	0/1:87:42,45:42:1460:45:1567:-115.127,0,-105.499	0/1:27:11,16:11:396:16:548:-41.5135,0,-27.8549	0/1:79:38,41:38:1347:41:1412:-103.591,0,-97.7481	0/0:68:66,2:66:2320:2:72:0,-13.6333,-202.222	0/1:68:38,30:38:1338:30:1051:-74.4296,0,-100.248	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:10:2,8:2:64:8:288:-23.2571,0,-3.06839	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:8:8,0:8:261:0:0:0,-2.40824,-23.808	0/1:15:8,7:8:288:7:233:-16.7788,0,-21.752	0/1:184:98,85:98:3423:85:2993:-214.153,0,-251.648	0/0:135:135,0:135:4802:0:0:0,-40.639,-432.338	0/1:62:19,42:19:665:42:1485:-115.259,0,-41.4885	0/1:3:1,2:1:32:2:57:-4.51022,0,-2.29622	0/0:56:54,1:54:1911:1:36:0,-13.3182,-168.669	0/0:36:36,0:36:1267:0:0:0,-10.8371,-114.332	0/1:45:19,26:19:680:26:932:-70.6525,0,-47.9828	0/1:80:41,39:41:1455:39:1381:-100.504,0,-107.163	0/1:52:21,31:21:739:31:1091:-82.8452,0,-51.1788	0/0:90:90,0:90:3208:0:0:0,-27.0927,-288.941	0/1:71:23,48:23:811:48:1684:-130.471,0,-51.9368	0/0:52:51,1:51:1804:1:36:0,-12.0553,-159.044	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:49:27,22:27:959:22:784:-56.1334,0,-71.8749	0/0:103:102,1:102:3610:1:36:0,-27.4078,-321.507	0/1:16:4,12:4:135:12:428:-34.0423,0,-7.66603	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.471	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/1:20:10,10:10:356:10:342:-25.0884,0,-26.3606	0/0:83:83,0:83:2918:0:0:0,-24.9855,-262.855	0/1:59:26,33:26:936:33:1180:-88.7473,0,-66.7987	.:.:.:.:.:.:.:.	0/1:17:12,5:12:417:5:180:-11.4346,0,-32.7427	0/1:37:13,24:13:431:24:852:-65.8623,0,-27.9683	0/1:123:68,54:68:2436:54:1891:-133.38,0,-182.41	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:108:51,57:51:1801:57:2010:-148.658,0,-129.85	0/0:112:112,0:112:3971:0:0:0,-33.7154,-357.581	0/1:36:14,22:14:500:22:768:-58.6033,0,-34.4991	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/1:99:57,42:57:1991:42:1430:-99.1853,0,-149.659	0/0:44:44,0:44:1557:0:0:0,-13.2453,-140.419	0/0:37:37,0:37:1284:0:0:0,-11.1381,-115.858	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/1:96:38,58:38:1356:58:1991:-150.558,0,-93.4416	0/1:13:5,8:5:180:8:271:-20.8055,0,-12.6387	0/0:88:88,0:88:3122:0:0:0,-26.4906,-281.207	0/1:55:25,30:25:891:30:1067:-79.7846,0,-63.9521	0/0:137:137,0:137:4848:0:0:0,-41.2411,-436.474	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:121:68,53:68:2400:53:1860:-131.251,0,-179.831	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/0:45:45,0:45:1592:0:0:0,-13.5463,-143.568	0/1:39:29,10:29:1014:10:345:-19.6407,0,-79.8298	0/0:123:123,0:123:4360:0:0:0,-37.0267,-392.576	0/0:84:84,0:84:2968:0:0:0,-25.2865,-267.353	0/0:63:63,0:63:2238:0:0:0,-18.9649,-201.683	0/1:64:32,32:32:1136:32:1140:-83.6433,0,-83.283	0/0:114:114,0:114:4059:0:0:0,-34.3174,-365.499	0/1:29:14,15:14:496:15:536:-39.8449,0,-36.2444	0/1:68:36,32:36:1288:32:1111:-79.8234,0,-95.7535	0/0:79:79,0:79:2795:0:0:0,-23.7814,-251.792	0/1:43:17,26:17:591:26:920:-70.1728,0,-40.571	0/1:146:75,71:75:2655:71:2498:-181.121,0,-195.247	0/1:53:17,36:17:604:36:1280:-99.5486,0,-38.736	0/0:57:57,0:57:2011:0:0:0,-17.1587,-181.263	0/0:79:79,0:79:2831:0:0:0,-23.7814,-255.028
chr09	20386299	.	TGGAG	TGGAA,CGGAA	154756	PASS	AB=0.47527,0.519578;ABP=23.6309,15.934;AC=138,48;AF=0.741935,0.258065;AN=186;AO=5341,2029;CIGAR=4M1X,1X3M1X;DP=7406;DPB=7406.6;DPRA=0,1.05427;EPP=11600.8,4408.93;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=1.95699,2.36364;MQM=59.9818,59.9438;MQMR=60;NS=93;NUMALT=2;ODDS=0.544668;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=54,54;PQR=0;PRO=0;QA=188515,71332;QR=36;RO=1;RPL=0,0;RPP=11600.8,4408.93;RPPR=5.18177;RPR=5341,2029;RUN=1,1;SAF=5341,2029;SAP=11600.8,4408.93;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,30,0:0:0:30,0:1072,0:-96.4227,-9.0309,0,-96.4227,-9.0309,-96.4227	1/1:138:0,138,0:0:0:138,0:4860,0:-437.559,-41.5421,0,-437.559,-41.5421,-437.559	1/1:72:0,72,0:0:0:72,0:2546,0:-229.388,-21.6742,0,-229.388,-21.6742,-229.388	1/1:92:0,88,3:0:0:88,3:3132,108:-281.748,-26.4906,0,-272.935,-17.6784,-272.032	1/2:56:0,21,34:0:0:21,34:744,1201:-158.47,-97.8601,-91.5385,-60.6614,0,-50.4264	1/2:55:0,25,30:0:0:25,30:873,1022:-154.264,-83.2509,-75.7252,-71.3579,0,-62.327	1/2:79:0,35,44:0:0:35,44:1239,1558:-228.191,-127.266,-116.73,-101.278,0,-88.0329	1/1:121:0,120,1:0:0:120,1:4204,34:-378.205,-36.1236,0,-375.447,-33.0257,-375.146	1/2:142:0,69,73:0:0:69,73:2400,2569:-404.615,-209.484,-188.713,-195.481,0,-173.506	1/1:58:0,58,0:0:0:58,0:2030,0:-182.969,-17.4597,0,-182.969,-17.4597,-182.969	1/2:77:0,35,41:0:0:35,41:1260,1455:-221.356,-118.544,-108.008,-102.81,0,-90.4674	1/1:85:0,83,0:0:0:83,0:2949,0:-265.283,-24.9855,0,-265.283,-24.9855,-265.283	1/1:103:0,103,0:0:0:103,0:3668,0:-330.325,-31.0061,0,-330.325,-31.0061,-330.325	1/2:86:0,32,53:0:0:32,53:1124,1860:-242.908,-151.423,-141.79,-91.5335,0,-75.5789	1/2:94:0,49,45:0:0:49,45:1737,1570:-269.554,-128.043,-113.293,-141.862,0,-128.316	1/2:66:0,29,36:0:0:29,36:1021,1254:-185.085,-101.965,-93.2352,-83.1108,0,-72.2737	1/2:64:0,27,37:0:0:27,37:960,1311:-185.387,-107.153,-99.0252,-78.5885,0,-67.4504	1/2:64:0,29,35:0:0:29,35:1040,1231:-185.385,-100.556,-91.8262,-85.1845,0,-74.6484	1/1:48:0,48,0:0:0:48,0:1708,0:-154.006,-14.4494,0,-154.006,-14.4494,-154.006	1/2:136:0,65,71:0:0:65,71:2308,2503:-392.205,-204.145,-184.578,-188.414,0,-167.041	1/1:186:0,185,0:0:0:185,0:6501,0:-584.821,-55.6906,0,-584.821,-55.6906,-584.821	1/2:53:0,14,39:0:0:14,39:488,1350:-149.744,-110.055,-105.841,-40.036,0,-28.2958	1/2:65:0,28,37:0:0:28,37:958,1306:-184.454,-106.703,-98.274,-78.0974,0,-66.9593	1/1:70:0,69,0:0:0:69,0:2411,0:-216.884,-20.7711,0,-216.884,-20.7711,-216.884	1/1:76:0,74,2:0:0:74,2:2632,72:-236.768,-22.2762,0,-230.893,-16.0416,-230.291	1/2:223:0,109,114:0:0:109,114:3823,3961:-633.471,-322.363,-289.551,-311.457,0,-277.139	1/2:193:0,91,102:0:0:91,102:3214,3591:-554.384,-292.692,-265.299,-262.044,0,-231.339	1/2:55:0,28,26:0:0:28,26:1000,925:-157.01,-75.4779,-67.049,-81.6232,0,-73.7964	1/2:209:0,102,106:0:0:102,106:3589,3736:-596.389,-304.225,-273.52,-292.205,0,-260.296	1/1:54:0,53,0:0:0:53,0:1888,0:-169.897,-15.9546,0,-169.897,-15.9546,-169.897	1/2:110:0,35,75:0:0:35,75:1210,2605:-310.439,-212.122,-201.586,-98.6629,0,-76.0856	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:12:0,5,7:0:0:5,7:172,251:-34.7935,-20.8306,-19.3255,-14.3128,0,-12.2056	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:8:0,8,0:0:0:8,0:279,0:-25.4475,-2.40824,0,-25.4475,-2.40824,-25.4475	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/2:190:0,93,96:0:0:93,96:3289,3421:-546.726,-278.846,-250.85,-267.875,0,-238.976	1/1:77:0,76,0:0:0:76,0:2673,0:-240.454,-22.8783,0,-240.454,-22.8783,-240.454	1/2:69:0,34,35:0:0:34,35:1216,1242:-200.703,-101.547,-91.312,-99.5115,0,-88.9755	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:62:0,60,2:0:0:60,2:2125,68:-191.177,-18.0618,0,-185.661,-12.206,-185.059	1/1:45:0,45,0:0:0:45,0:1596,0:-143.93,-13.5464,0,-143.93,-13.5464,-143.93	1/2:116:0,70,44:0:0:70,44:2500,1557:-330.641,-126.817,-105.745,-203.82,0,-190.575	1/2:126:0,58,68:0:0:58,68:2054,2397:-362.823,-195.506,-178.047,-167.67,0,-147.2	1/2:77:0,48,28:0:0:48,28:1704,976:-218.291,-79.4497,-65.0002,-138.919,0,-130.49	1/1:58:0,58,0:0:0:58,0:2061,0:-185.759,-17.4597,0,-185.759,-17.4597,-185.759	1/2:57:0,34,23:0:0:34,23:1201,818:-164.821,-67.017,-56.782,-98.1586,0,-91.2349	1/1:60:0,60,0:0:0:60,0:2116,0:-190.709,-18.0618,0,-190.709,-18.0618,-190.709	1/1:58:0,58,0:0:0:58,0:2034,0:-183.329,-17.4597,0,-183.329,-17.4597,-183.329	1/2:110:1,65,43:1:36:65,43:2313,1533:-310.227,-122.022,-105.393,-185.565,0,-175.558	1/1:79:0,79,0:0:0:79,0:2781,0:-250.532,-23.7814,0,-250.532,-23.7814,-250.532	1/2:17:0,5,12:0:0:5,12:180,429:-50.0251,-35.3373,-33.8322,-15.0469,0,-11.4346	1/1:87:0,86,0:0:0:86,0:2961,0:-266.422,-25.8886,0,-266.422,-25.8886,-266.422	1/1:29:0,29,0:0:0:29,0:1035,0:-93.4631,-8.72987,0,-93.4631,-8.72987,-93.4631	.:.:.:.:.:.:.:.	1/1:81:0,81,0:0:0:81,0:2888,0:-260.157,-24.3834,0,-260.157,-24.3834,-260.157	1/2:26:0,16,9:0:0:16,9:576,321:-73.1739,-26.1728,-21.3563,-47.0081,0,-44.2988	1/2:5:0,3,2:0:0: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chr09	20486362	.	C	T	34114.9	PASS	AB=0.534596;ABP=42.5258;AC=51;AF=0.274194;AN=186;AO=2045;CIGAR=1X;DP=7738;DPB=7738;DPRA=0.813633;EPP=4434.99;EPPR=12358.7;GTI=1;LEN=1;MEANALT=1.05;MQM=59.7227;MQMR=59.9443;NS=93;NUMALT=1;ODDS=0.902253;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72173;QR=202270;RO=5690;RPL=2045;RPP=4443.67;RPPR=12358.7;RPR=0;RUN=1;SAF=1;SAP=4434.99;SAR=2044;SRF=0;SRP=12358.7;SRR=5690;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:68:68,0:68:2407:0:0:0,-20.47,-216.887	0/0:94:94,0:94:3344:0:0:0,-28.2968,-301.179	0/0:130:130,0:130:4597:0:0:0,-39.1339,-413.898	0/0:236:236,0:236:8422:0:0:0,-71.0431,-757.758	0/1:85:41,44:41:1472:44:1550:-114.203,0,-107.189	0/1:44:36,8:36:1263:8:288:-12.9148,0,-100.726	0/1:86:49,37:49:1748:37:1312:-92.4931,0,-131.716	0/0:107:107,0:107:3823:0:0:0,-32.2102,-344.253	0/1:133:46,87:46:1647:87:3032:-233.059,0,-108.481	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:32:14,18:14:491:18:648:-48.9324,0,-34.8882	0/0:81:81,0:81:2840:0:0:0,-24.3834,-255.831	0/0:85:85,0:85:3010:0:0:0,-25.5875,-271.132	0/1:38:17,21:17:608:21:736:-54.8509,0,-43.6129	0/1:60:24,36:24:856:36:1242:-93.9999,0,-59.295	0/1:62:31,31:31:1090:31:1108:-81.3671,0,-79.744	0/1:30:16,14:16:563:14:496:-35.9434,0,-41.9535	0/1:31:14,17:14:496:17:604:-45.3587,0,-35.6423	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/1:126:53,73:53:1884:73:2564:-193.078,0,-131.909	0/0:149:149,0:149:5271:0:0:0,-44.8535,-474.501	0/1:80:20,60:20:712:60:2122:-167.166,0,-40.3243	0/1:125:68,57:68:2440:57:2012:-143.723,0,-182.199	0/0:86:86,0:86:3051:0:0:0,-25.8886,-274.821	0/0:141:139,1:139:4954:1:36:0,-38.9058,-442.411	0/1:248:115,133:115:4106:133:4692:-347.785,0,-295.068	0/1:235:124,111:124:4397:111:3938:-283.55,0,-325.154	0/1:19:8,11:8:284:11:388:-29.5378,0,-20.1838	0/1:270:134,135:134:4784:135:4758:-346.064,0,-349.421	0/0:98:98,0:98:3479:0:0:0,-29.5009,-313.323	0/1:127:89,38:89:3148:38:1356:-84.034,0,-245.315	0/0:4:4,0:4:131:0:0:0,-1.20412,-12.1135	0/1:20:3,17:3:108:17:604:-48.67,0,-4.05457	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:11:2,9:2:72:9:316:-25.4675,0,-3.52539	0/1:164:72,92:72:2572:92:3242:-242.627,0,-182.339	0/0:66:66,0:66:2335:0:0:0,-19.868,-210.406	0/1:31:15,16:15:523:16:568:-42.1199,0,-38.0665	.:.:.:.:.:.:.:.	0/0:151:150,1:150:5340:1:36:0,-41.8573,-477.136	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:163:70,93:70:2492:93:3308:-248.315,0,-175.336	0/1:76:42,34:42:1490:34:1212:-86.5079,0,-111.515	0/1:59:26,33:26:932:33:1172:-87.9971,0,-66.4381	0/0:118:118,0:118:4203:0:0:0,-35.5215,-378.453	0/1:56:26,30:26:915:30:1061:-78.9137,0,-65.7711	0/0:139:139,0:139:4934:0:0:0,-41.8432,-444.212	0/0:98:98,0:98:3487:0:0:0,-29.5009,-314.042	0/1:112:56,56:56:2016:56:1984:-145.116,0,-147.998	0/0:209:209,0:209:7441:0:0:0,-62.9153,-669.739	0/1:7:1,6:1:36:6:208:-16.9519,0,-1.49106	0/0:120:120,0:120:4271:0:0:0,-36.1236,-384.57	0/0:52:51,1:51:1818:1:36:0,-12.0553,-160.302	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:102:102,0:102:3600:0:0:0,-30.7051,-324.208	0/1:70:42,28:42:1479:28:991:-68.3456,0,-112.332	0/1:8:1,7:1:36:7:244:-19.3258,0,-1.19003	0/1:19:9,10:9:316:10:352:-26.2981,0,-23.0593	0/1:44:23,21:23:820:21:756:-55.1219,0,-60.8772	0/1:79:32,47:32:1130:47:1679:-127.611,0,-78.2118	0/1:7:3,4:3:108:4:129:-9.82004,0,-7.96796	0/1:110:37,73:37:1319:73:2587:-199.959,0,-85.8979	0/0:133:131,2:131:4649:2:72:0,-33.2003,-411.738	0/1:55:25,30:25:900:30:1061:-79.2397,0,-64.7082	0/0:74:74,0:74:2588:0:0:0,-22.2762,-233.169	0/1:225:80,144:80:2835:144:4997:-382.082,0,-187.599	0/0:130:130,0:130:4634:0:0:0,-39.1339,-417.224	0/0:38:38,0:38:1330:0:0:0,-11.4391,-119.998	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4328	0/1:34:19,15:19:684:15:531:-37.8877,0,-51.6553	0/1:14:9,5:9:320:5:176:-11.9566,0,-24.9279	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.211	0/1:119:42,77:42:1508:77:2729:-209.866,0,-100.192	0/0:124:124,0:124:4415:0:0:0,-37.3277,-397.523	0/0:73:71,2:71:2544:2:68:0,-15.5175,-222.753	0/1:74:47,27:47:1667:27:952:-63.719,0,-128.04	0/0:108:106,2:106:3771:2:72:0,-25.6745,-332.753	0/1:18:11,7:11:392:7:243:-16.7889,0,-30.2015	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.202	0/1:70:37,33:37:1324:33:1175:-84.9844,0,-98.39	0/0:257:257,0:257:9200:0:0:0,-77.3647,-827.969	0/0:44:43,1:43:1532:1:36:0,-9.64704,-134.575	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/1:38:18,20:18:623:20:716:-53.3282,0,-44.9538	0/0:88:86,2:86:3050:2:64:0,-20.4119,-268.652	0/1:14:5,9:5:180:9:312:-24.2009,0,-12.3376	0/1:60:21,39:21:735:39:1398:-107.629,0,-47.0386	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/1:24:11,13:11:378:13:464:-34.8728,0,-27.1244	0/1:77:44,33:44:1547:33:1168:-82.2479,0,-116.342	0/1:104:34,70:34:1177:70:2432:-187.829,0,-74.9249	0/0:26:25,1:25:888:1:36:0,-4.2285,-76.6408	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.064
chr09	20486379	.	C	T	119371	PASS	AB=0.450331;ABP=87.1369;AC=135;AF=0.725806;AN=186;AO=5704;CIGAR=1X;DP=7892;DPB=7892;DPRA=0;EPP=12389.1;EPPR=4676.02;GTI=0;LEN=1;MEANALT=1.24731;MQM=59.9395;MQMR=59.7189;NS=93;NUMALT=1;ODDS=3.25888;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203857;QR=76751;RO=2152;RPL=5704;RPP=12389.1;RPPR=4676.02;RPR=0;RUN=1;SAF=0;SAP=12389.1;SAR=5704;SRF=0;SRP=4676.02;SRR=2152;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:93:0,93:0:0:93:3268:-294.338,-27.9958,0	1/1:127:0,127:0:0:127:4502:-405.349,-38.2308,0	1/1:237:0,237:0:0:237:8481:-763.289,-71.3441,0	0/1:91:49,42:49:1756:42:1492:-107.181,0,-130.902	0/1:46:10,35:10:337:35:1244:-98.3586,0,-16.7045	0/1:93:42,51:42:1462:51:1828:-136.791,0,-103.87	1/1:109:0,109:0:0:109:3889:-350.159,-32.8123,0	0/1:142:97,45:97:3480:45:1608:-102.264,0,-270.655	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	1/1:85:0,84:0:0:84:3012:-270.943,-25.2865,0	1/1:85:0,83:0:0:83:2980:-268.072,-24.9855,0	0/1:38:21,17:21:748:17:608:-43.6129,0,-55.7134	0/1:62:38,24:38:1364:24:860:-59.0537,0,-104.347	0/1:63:33,30:33:1169:30:1057:-76.4741,0,-86.5504	0/1:30:14,16:14:496:16:576:-43.1081,0,-35.9434	0/1:31:17,14:17:604:14:500:-36.0042,0,-45.3587	1/1:28:0,27:0:0:27:972:-87.4381,-8.12781,0	0/1:133:79,54:79:2813:54:1944:-135.199,0,-213.312	1/1:150:0,150:0:0:150:5326:-479.426,-45.1545,0	0/1:84:60,22:60:2156:22:784:-45.8399,0,-169.262	0/1:126:59,67:59:2100:67:2408:-179.033,0,-151.147	1/1:89:0,89:0:0:89:3166:-285.162,-26.7917,0	1/1:145:0,145:0:0:145:5158:-464.358,-43.6494,0	0/1:253:140,113:140:4943:113:4060:-289.423,0,-368.859	0/1:242:118,124:118:4213:124:4437:-326.641,0,-304.865	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	0/1:274:139,135:139:4950:135:4828:-352.191,0,-362.465	1/1:95:0,95:0:0:95:3389:-305.223,-28.5979,0	0/1:127:39,88:39:1404:88:3140:-244.596,0,-88.3524	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:20:17,3:17:612:3:108:-4.05457,0,-49.3928	0/1:4:2,2:2:57:2:68:-5.25359,0,-4.20919	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:9,2:9:309:2:72:-3.52539,0,-24.8294	0/1:163:92,71:92:3296:71:2556:-181.199,0,-247.783	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	0/1:30:15,14:15:536:14:504:-36.6084,0,-39.4853	.:.:.:.:.:.:.:.	1/1:151:0,151:0:0:151:5386:-484.87,-45.4555,0	1/1:35:0,33:0:0:33:1173:-105.516,-9.93399,0	0/1:165:97,65:97:3446:65:2313:-159.173,0,-260.997	0/1:76:34,40:34:1220:40:1429:-106.272,0,-87.4708	0/1:66:37,29:37:1328:29:1040:-74.0464,0,-99.9247	1/1:121:0,119:0:0:119:4268:-383.938,-35.8226,0	0/1:62:34,28:34:1212:28:1008:-70.9202,0,-90.667	1/1:138:1,137:1:36:137:4909:-438.361,-37.9439,0	1/1:99:0,99:0:0:99:3540:-318.802,-29.802,0	0/1:114:58,56:58:2084:56:2012:-147.036,0,-153.509	1/1:211:0,211:0:0:211:7534:-678.092,-63.5173,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:117:0,114:0:0:114:4069:-366.036,-34.3174,0	1/1:54:0,53:0:0:53:1863:-167.584,-15.9546,0	0/1:6:3,3:3:89:3:108:-8.26899,0,-6.49697	1/1:103:0,103:0:0:103:3700:-333.201,-31.0061,0	0/1:73:30,43:30:1076:43:1529:-115.926,0,-74.8018	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:20:10,10:10:356:10:360:-26.7228,0,-26.3606	0/1:44:21,23:21:752:23:828:-61.5988,0,-54.7609	0/1:82:49,33:49:1760:33:1188:-82.5304,0,-133.995	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8372	0/1:113:74,39:74:2618:39:1389:-91.2905,0,-201.849	1/1:135:2,133:2:72:133:4757:-421.45,-33.8023,0	0/1:51:30,19:30:1080:19:669:-45.4244,0,-82.3805	1/1:72:0,72:0:0:72:2592:-233.528,-21.6742,0	0/1:245:163,82:163:5825:82:2940:-191.082,0,-450.595	1/1:131:0,131:0:0:131:4692:-422.44,-39.4349,0	1/1:38:0,38:0:0:38:1345:-121.348,-11.4391,0	1/1:29:0,28:0:0:28:1008:-90.6719,-8.42884,0	0/1:36:17,18:17:608:18:629:-46.0385,0,-44.1563	0/1:17:7,10:7:248:10:356:-27.2637,0,-17.5328	1/1:100:0,100:0:0:100:3565:-321.057,-30.103,0	0/1:120:78,42:78:2796:42:1508:-99.891,0,-215.293	1/1:127:0,126:0:0:126:4498:-404.625,-37.9298,0	1/1:72:1,71:1:36:71:2548:-225.972,-18.0759,0	0/1:76:26,49:26:936:49:1741:-134.035,0,-61.6224	1/1:114:2,112:2:72:112:4005:-353.8,-27.4807,0	0/1:20:9,11:9:324:11:388:-29.2368,0,-23.4853	1/1:75:0,74:0:0:74:2649:-238.293,-22.2762,0	0/1:74:37,37:37:1320:37:1328:-97.546,0,-96.8253	1/1:262:0,262:0:0:262:9351:-841.55,-78.8699,0	1/1:45:0,44:0:0:44:1580:-142.132,-13.2453,0	1/1:60:0,58:0:0:58:2088:-187.83,-17.4597,0	0/1:38:21,17:21:752:17:612:-43.9743,0,-56.5667	1/1:85:2,80:2:72:80:2865:-251.249,-18.2076,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:63:40,23:40:1424:23:824:-54.4863,0,-109.264	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/1:75:32,42:32:1136:42:1512:-113.739,0,-79.913	0/1:116:80,36:80:2864:36:1284:-80.9439,0,-223.077	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:75:0,74:0:0:74:2652:-238.557,-22.2762,0
chr09	20530850	.	G	A	101293	PASS	AB=0.524245;ABP=19.7523;AC=133;AF=0.722826;AN=184;AO=4762;CIGAR=1X;DP=6329;DPB=6329;DPRA=34.7637;EPP=10007.6;EPPR=3338.66;GTI=4;LEN=1;MEANALT=1.02198;MQM=59.9089;MQMR=59.9789;NS=92;NUMALT=1;ODDS=1.2254;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169911;QR=55970;RO=1564;RPL=39;RPP=10007.6;RPPR=3338.66;RPR=4723;RUN=1;SAF=4762;SAP=10343.6;SAR=0;SRF=1564;SRP=3399.19;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:343:-31.1997,-3.0103,0	1/1:85:0,85:0:0:85:3024:-272.319,-25.5876,0	1/1:98:0,98:0:0:98:3510:-316.11,-29.5009,0	1/1:119:0,119:0:0:119:4206:-378.723,-35.8226,0	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/1:66:33,33:33:1176:33:1168:-85.5592,0,-86.2798	1/1:75:0,75:0:0:75:2657:-239.347,-22.5773,0	0/1:55:20,35:20:720:35:1232:-94.617,0,-48.5721	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	0/1:67:32,34:32:1144:34:1216:-89.5281,0,-83.0511	1/1:73:0,73:0:0:73:2604:-234.607,-21.9752,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	0/1:73:32,41:32:1152:41:1472:-110.8,0,-82.015	0/1:82:40,42:40:1432:42:1508:-111.33,0,-104.493	0/1:75:43,32:43:1548:32:1152:-81.4125,0,-117.036	0/1:70:31,39:31:1108:39:1404:-105.579,0,-78.9589	0/1:60:31,29:31:1112:29:1040:-75.8526,0,-82.3295	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:134:62,72:62:2205:72:2568:-191.032,0,-158.376	1/1:88:0,88:0:0:88:3132:-282.103,-26.4906,0	0/1:48:32,16:32:1148:16:568:-37.0024,0,-89.1804	0/1:41:16,25:16:572:25:874:-66.6325,0,-39.4712	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:207:89,118:89:3158:118:4156:-311.91,0,-221.903	0/1:132:47,85:47:1684:85:3005:-230.936,0,-112.111	0/1:38:21,17:21:747:17:604:-43.2515,0,-56.1152	0/1:145:70,75:70:2512:75:2688:-198.515,0,-182.683	1/1:57:0,57:0:0:57:2029:-182.876,-17.1587,0	0/1:74:36,38:36:1288:38:1348:-99.3361,0,-93.9474	.:.:.:.:.:.:.:.	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:8,1:8:288:1:32:-0.490043,0,-23.5581	0/1:217:108,109:108:3876:109:3893:-285.233,0,-283.71	1/1:109:0,109:0:0:109:3870:-348.445,-32.8123,0	1/1:60:0,60:0:0:60:2156:-194.305,-18.0618,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	1/1:123:0,123:0:0:123:4398:-395.994,-37.0267,0	1/1:100:0,100:0:0:100:3580:-322.394,-30.103,0	0/1:42:20,22:20:716:22:776:-57.5107,0,-52.1245	0/1:50:28,22:28:1008:22:792:-56.5542,0,-75.9849	0/1:62:28,34:28:1008:34:1224:-91.8032,0,-72.3725	0/1:71:38,33:38:1340:33:1184:-84.3888,0,-99.5241	0/1:59:32,25:32:1131:25:873:-61.3668,0,-84.5796	1/1:97:1,96:1:36:96:3440:-306.212,-25.6016,0	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	0/1:78:40,38:40:1423:38:1368:-99.9401,0,-104.886	1/1:64:0,64:0:0:64:2259:-203.57,-19.2659,0	0/1:7:1,6:1:36:6:216:-17.6829,0,-1.49106	1/1:177:0,177:0:0:177:6344:-570.933,-53.2823,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	.:.:.:.:.:.:.:.	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	0/1:25:12,13:12:432:13:464:-34.5671,0,-31.6954	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:68:32,36:32:1148:36:1280:-95.0332,0,-83.1598	0/1:133:52,81:52:1860:81:2894:-220.659,0,-127.643	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:163:79,84:79:2836:84:2978:-219.126,0,-206.41	1/1:90:0,90:0:0:90:3220:-290.023,-27.0927,0	0/1:46:20,26:20:716:26:924:-69.6303,0,-50.9203	1/1:43:0,43:0:0:43:1532:-138.173,-12.9443,0	0/1:85:42,43:42:1504:43:1540:-113.306,0,-110.067	1/1:68:0,68:0:0:68:2433:-219.225,-20.47,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	0/1:89:40,49:40:1432:49:1764:-132.247,0,-102.386	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:51:0,51:0:0:51:1818:-163.468,-15.3525,0	0/1:40:11,29:11:392:29:1028:-80.7895,0,-23.5789	1/1:102:0,102:0:0:102:3644:-328.165,-30.7051,0	1/1:117:1,116:1:36:116:4152:-370.263,-31.6222,0	0/1:54:28,26:28:1008:26:924:-67.222,0,-74.7807	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:96:2,94:2:72:94:3353:-295.149,-22.0622,0	0/1:58:32,26:32:1139:26:928:-66.378,0,-85.3569	1/1:79:0,79:0:0:79:2801:-252.328,-23.7814,0	1/1:99:0,99:0:0:99:3536:-318.443,-29.802,0	1/1:80:0,80:0:0:80:2845:-256.287,-24.0824,0	0/1:91:41,50:41:1476:50:1788:-133.808,0,-105.742	1/1:124:1,123:1:36:123:4416:-393.236,-33.7294,0	0/1:50:27,23:27:968:23:820:-59.071,0,-72.3859	0/1:81:39,42:39:1400:42:1497:-110.639,0,-101.916	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	0/1:67:24,43:24:860:43:1544:-119.084,0,-57.5528	0/1:110:56,54:56:2012:54:1925:-140.403,0,-148.24	0/1:69:46,23:46:1639:23:824:-53.7099,0,-127.027	1/1:97:0,97:0:0:97:3444:-310.028,-29.1999,0	1/1:72:0,72:0:0:72:2582:-232.629,-21.6742,0
chr09	20555337	.	T	A	73078.4	PASS	AB=0.497297;ABP=3.15115;AC=131;AF=0.71978;AN=182;AO=3547;CIGAR=1X;DP=4678;DPB=4678;DPRA=8.65185;EPP=7696.54;EPPR=2452.43;GTI=5;LEN=1;MEANALT=1.02222;MQM=59.4449;MQMR=59.9176;NS=91;NUMALT=1;ODDS=0.0851895;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124979;QR=40289;RO=1128;RPL=3547;RPP=7705.22;RPPR=2452.43;RPR=0;RUN=1;SAF=3546;SAP=7696.54;SAR=1;SRF=1128;SRP=2452.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1363:-122.959,-11.7402,0	1/1:61:0,61:0:0:61:2133:-192.179,-18.3628,0	1/1:107:0,107:0:0:107:3777:-340.122,-32.2102,0	1/1:89:0,89:0:0:89:3151:-283.787,-26.7917,0	0/1:44:24,20:24:860:20:708:-50.6883,0,-64.475	0/1:27:9,18:9:320:18:648:-50.5018,0,-21.0145	0/1:34:9,25:9:324:25:880:-69.2744,0,-19.2708	1/1:63:0,63:0:0:63:2218:-199.837,-18.9649,0	0/1:66:25,41:25:887:41:1450:-110.925,0,-60.2801	1/1:32:0,32:0:0:32:1132:-102.097,-9.63296,0	0/1:26:14,12:14:500:12:402:-28.6725,0,-37.5094	1/1:77:0,77:0:0:77:2748:-247.546,-23.1793,0	1/1:60:0,60:0:0:60:2053:-185.024,-18.0618,0	0/1:46:16,30:16:576:30:1062:-82.0066,0,-38.3276	0/1:64:37,27:37:1323:27:952:-66.7178,0,-100.105	0/1:43:24,19:24:842:19:659:-46.4589,0,-63.1476	0/1:22:7,15:7:252:15:514:-39.9546,0,-16.3885	0/1:19:11,8:11:392:8:284:-20.1755,0,-29.9005	1/1:27:0,27:0:0:27:946:-85.4193,-8.12781,0	0/1:31:19,12:19:676:12:432:-29.8846,0,-51.8255	1/1:64:0,64:0:0:64:2248:-202.525,-19.2659,0	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:79:39,40:39:1396:40:1414:-103.775,0,-102.155	1/1:28:0,28:0:0:28:996:-89.9503,-8.42884,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:119:67,52:67:2404:52:1856:-131.428,0,-180.794	0/1:74:39,35:39:1392:35:1243:-89.8884,0,-103.171	0/1:40:18,22:18:648:22:768:-57.395,0,-46.6107	0/1:74:34,40:34:1224:40:1428:-106.22,0,-88.1908	1/1:86:0,86:0:0:86:3012:-271.309,-25.8886,0	0/1:41:18,23:18:648:23:816:-61.4148,0,-46.3097	1/1:11:0,11:0:0:11:387:-35.1659,-3.31133,0	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:168:97,70:97:3461:70:2440:-169.221,0,-261.069	1/1:50:0,50:0:0:50:1776:-160.073,-15.0515,0	1/1:35:0,35:0:0:35:1213:-109.458,-10.5361,0	.:.:.:.:.:.:.:.	1/1:63:0,63:0:0:63:2205:-198.242,-18.9649,0	1/1:13:0,13:0:0:13:456:-41.3732,-3.91339,0	0/1:79:28,51:28:1004:51:1801:-137.196,0,-66.8921	0/1:53:30,23:30:1068:23:798:-56.1811,0,-80.4773	0/1:43:27,16:27:964:16:544:-36.3373,0,-74.1325	0/1:61:30,31:30:1076:31:1089:-79.9463,0,-78.79	0/1:52:32,20:32:1135:20:712:-48.7449,0,-86.8045	1/1:95:0,95:0:0:95:3352:-300.584,-28.5979,0	1/1:9:0,9:0:0:9:320:-29.14,-2.70927,0	0/1:73:29,44:29:1036:44:1571:-119.689,0,-71.5787	1/1:26:0,26:0:0:26:924:-83.4744,-7.82678,0	0/1:8:1,7:1:36:7:248:-20.2513,0,-1.19003	1/1:78:0,78:0:0:78:2776:-249.462,-23.4803,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:12:2,10:2:72:10:352:-28.4058,0,-3.22436	1/1:97:0,97:0:0:97:3429:-308.807,-29.1999,0	0/1:27:18,9:18:648:9:320:-21.0136,0,-50.5241	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:6:3,3:3:104:3:98:-7.05616,0,-7.89663	0/1:40:23,17:23:819:17:595:-41.1878,0,-61.9898	0/1:71:44,27:44:1572:27:943:-63.8073,0,-120.398	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:79:40,39:40:1424:39:1363:-99.1795,0,-104.676	1/1:92:1,91:1:36:91:3224:-286.748,-24.0965,0	0/1:36:17,19:17:600:19:684:-51.0486,0,-43.4921	1/1:40:0,40:0:0:40:1411:-127.274,-12.0412,0	0/1:104:39,65:39:1404:65:2257:-172.067,0,-95.3522	1/1:94:0,94:0:0:94:3332:-300.08,-28.2968,0	1/1:23:0,23:0:0:23:808:-73.0355,-6.92369,0	1/1:55:0,55:0:0:55:1936:-174.479,-16.5567,0	0/1:53:27,26:27:968:26:898:-65.0919,0,-71.4794	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	1/1:54:0,54:0:0:54:1886:-169.98,-16.2556,0	0/1:35:17,18:17:603:18:644:-47.7464,0,-44.0635	1/1:55:0,55:0:0:55:1968:-177.189,-16.5567,0	1/1:78:0,78:0:0:78:2776:-249.973,-23.4803,0	0/1:36:18,18:18:648:18:627:-45.9068,0,-47.8148	1/1:94:4,90:4:144:90:3168:-272.005,-14.9832,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:71:0,71:0:0:71:2495:-224.791,-21.3731,0	0/1:36:15,21:15:536:21:752:-57.1325,0,-37.7377	1/1:71:0,71:0:0:71:2531:-228.027,-21.3731,0	1/1:51:0,51:0:0:51:1769:-159.397,-15.3525,0	1/1:82:0,80:0:0:80:2783:-250.42,-24.0824,0	0/1:40:18,22:18:648:22:788:-59.2012,0,-46.6107	1/1:111:1,110:1:36:110:3888:-346.371,-29.8161,0	0/1:27:14,13:14:504:13:452:-32.8751,0,-37.5703	0/1:51:33,18:33:1170:18:632:-41.7954,0,-90.2533	1/1:54:0,54:0:0:54:1892:-170.525,-16.2556,0	0/1:15:6,9:6:216:9:312:-23.8913,0,-15.2751	0/1:62:36,26:36:1269:26:912:-63.7182,0,-95.8293	0/1:54:42,12:42:1492:12:420:-21.2443,0,-118.319	1/1:92:0,92:0:0:92:3234:-291.283,-27.6948,0	1/1:78:1,77:1:36:77:2707:-240.244,-19.8821,0
chr09	20563275	.	TAAGT	AAAGT,AAAGA	337597	PASS	AB=0.463428,0.532968;ABP=90.0501,73.7414;AC=136,52;AF=0.723404,0.276596;AN=188;AO=11665,4023;CIGAR=1X4M,1X3M1X;DP=15744;DPB=15747.6;DPRA=0,0.913027;EPP=25333.2,8738.84;EPPR=9.52472;GTI=1;LEN=1,5;MEANALT=2.21277,2.49231;MQM=59.946,59.6555;MQMR=60;NS=94;NUMALT=2;ODDS=3.23823;PAIRED=0,0;PAIREDR=0;PAO=7.5,7.5;PQA=204,204;PQR=0;PRO=0;QA=417660,141675;QR=78;RO=3;RPL=11665,4023;RPP=25333.2,8738.84;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=25333.2,8738.84;SAR=11665,4023;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:75:0,75,0:0:0:75,0:2684,0:-241.797,-22.5773,0,-241.797,-22.5773,-241.797	1/1:159:0,159,0:0:0:159,0:5704,0:-513.287,-47.8638,0,-513.287,-47.8638,-513.287	1/1:421:0,420,0:0:0:420,0:15049,0:-1353.86,-126.433,0,-1353.86,-126.433,-1353.86	1/1:522:0,521,0:0:0:521,0:18640,0:-1676.88,-156.837,0,-1676.88,-156.837,-1676.88	1/2:104:0,51,53:0:0:51,53:1828,1830:-298.04,-148.944,-133.591,-149.448,0,-133.494	1/2:69:0,22,47:0:0:22,47:792,1656:-199.805,-135.179,-128.556,-64.983,0,-50.8346	1/2:122:0,55,66:0:0:55,66:1961,2306:-347.435,-187.581,-171.024,-159.857,0,-139.989	1/1:240:0,239,0:0:0:239,0:8529,0:-767.327,-71.9462,0,-767.327,-71.9462,-767.327	1/2:206:0,116,90:0:0:116,90:4155,3182:-598.323,-259.465,-224.546,-339.213,0,-312.12	1/1:83:0,83,0:0:0:83,0:2980,0:-268.432,-24.9855,0,-268.432,-24.9855,-268.432	1/2:59:0,11,47:0:0:11,47:387,1640:-164.879,-133.376,-130.064,-31.4955,0,-17.3471	1/1:120:0,118,0:0:0:118,0:4228,0:-380.375,-35.5215,0,-380.375,-35.5215,-380.375	1/1:80:0,80,0:0:0:80,0:2859,0:-257.469,-24.0824,0,-257.469,-24.0824,-257.469	1/2:89:0,39,49:0:0:39,49:1400,1733:-255.333,-141.135,-129.395,-114.195,0,-99.4441	1/2:84:0,44,40:0:0:44,40:1580,1405:-243.549,-114.658,-101.412,-129.246,0,-117.205	1/2:79:0,34,44:0:0:34,44:1224,1555:-226.66,-126.784,-116.549,-100.019,0,-86.7732	1/2:55:0,22,32:0:0:22,32:788,1132:-156.603,-92.3355,-85.7128,-64.4065,0,-54.7735	1/2:41:0,16,25:0:0:16,25:576,891:-119.976,-72.9754,-68.159,-47.3585,0,-39.8328	1/1:37:0,37,0:0:0:37,0:1315,0:-118.651,-11.1381,0,-118.651,-11.1381,-118.651	1/2:292:0,125,167:0:0:125,167:4476,5901:-845.857,-480.833,-443.204,-365.381,0,-315.109	1/1:332:1,327,0:1:22:327,0:11691,0:-1049.74,-96.7849,0,-1050.04,-98.4368,-1051.72	1/2:234:0,72,161:0:0:72,161:2576,5673:-671.919,-461.86,-440.186,-210.056,0,-161.59	1/2:344:0,141,201:0:0:141,201:5047,7068:-986.915,-575.396,-532.951,-411.593,0,-351.085	1/1:134:0,133,0:0:0:133,0:4753,0:-427.297,-40.037,0,-427.297,-40.037,-427.297	1/1:157:0,156,1:0:0:156,1:5584,36:-502.194,-46.9607,0,-499.256,-43.6634,-498.955	1/2:596:0,274,321:0:0:274,321:9794,11237:-1712.69,-914.124,-831.642,-798.642,0,-702.011	1/2:556:0,290,265:0:0:290,265:10398,9364:-1610.46,-762.504,-675.206,-847.949,0,-768.176	1/2:30:0,17,13:0:0:17,13:612,468:-88.4823,-38.5463,-33.4287,-50.2959,0,-46.3825	1/2:489:0,214,271:0:0:214,271:7676,9533:-1402.11,-776.012,-711.591,-626.114,0,-544.535	1/1:209:0,209,0:0:0:209,0:7492,0:-674.246,-62.9153,0,-674.246,-62.9153,-674.246	1/2:230:0,65,165:0:0:65,165:2332,5810:-663.533,-473.32,-453.753,-190.57,0,-140.9	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:58:0,27,30:0:0:27,30:972,1064:-166.097,-86.7826,-78.6548,-79.4162,0,-70.3853	1/2:9:0,7,2:0:0:7,2:248,71:-26.2343,-6.14,-4.03279,-20.4486,0,-19.8465	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:15:0,5,10:0:0:5,10:180,352:-43.6895,-28.9997,-27.4946,-15.0469,0,-12.0366	1/2:222:0,123,98:0:0:123,98:4416,3465:-642.37,-282.141,-245.115,-360.224,0,-330.723	1/1:209:0,209,0:0:0:209,0:7500,0:-675.003,-62.9153,0,-675.003,-62.9153,-675.003	1/1:54:0,54,0:0:0:54,0:1922,0:-173.247,-16.2556,0,-173.247,-16.2556,-173.247	1/2:10:0,3,7:0:0:3,7:108,247:-29.2801,-20.4657,-19.5626,-9.17208,0,-7.06487	1/1:232:0,228,4:0:0:228,4:8180,144:-735.847,-68.6348,0,-724.097,-56.5253,-722.893	1/1:37:0,37,0:0:0:37,0:1324,0:-119.462,-11.1381,0,-119.462,-11.1381,-119.462	1/2:271:0,141,128:0:0:141,128:5048,4460:-774.319,-362.696,-320.251,-411.655,0,-373.123	1/2:56:0,27,29:0:0:27,29:972,1040:-164.493,-85.1823,-77.0545,-79.6701,0,-70.9402	1/2:67:0,35,32:0:0:35,32:1260,1094:-191.946,-89.1271,-78.5911,-103.169,0,-93.5365	1/2:174:0,85,89:0:0:85,89:3048,3132:-503.912,-255.306,-229.718,-248.962,0,-222.17	1/2:262:1,135,126:1:26:135,126:4832,4479:-756.31,-362.93,-324.329,-391.738,0,-355.847	1/1:339:0,337,1:0:0:337,1:12058,35:-1084.43,-101.447,0,-1081.58,-98.6044,-1081.28	1/1:151:1,149,1:1:30:149,1:5352,36:-478.779,-42.4848,0,-476.142,-41.8861,-478.239	1/2:207:0,125,81:0:0:125,81:4480,2852:-597.328,-231.942,-194.314,-365.38,0,-340.997	1/1:232:0,231,0:0:0:231,0:8280,0:-744.848,-69.5379,0,-744.848,-69.5379,-744.848	1/2:15:0,9,6:0:0:9,6:324,216:-44.4211,-17.9843,-15.2751,-26.7966,0,-24.9904	1/1:250:0,248,1:0:0:248,1:8885,31:-799.296,-74.6554,0,-796.808,-72.1919,-796.507	1/1:131:0,130,0:0:0:130,0:4648,0:-418.178,-39.1339,0,-418.178,-39.1339,-418.178	1/2:14:0,7,7:0:0:7,7:252,247:-41.0312,-20.4657,-18.3585,-20.9217,0,-18.8145	1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chr09	20569931	.	C	G	31200	PASS	AB=0.478849;ABP=18.8098;AC=51;AF=0.271277;AN=188;AO=1954;CIGAR=1X;DP=8028;DPB=8028;DPRA=1.02275;EPP=4246.07;EPPR=13155.6;GTI=2;LEN=1;MEANALT=1.08621;MQM=59.9734;MQMR=59.9982;NS=94;NUMALT=1;ODDS=0.264526;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68760;QR=214735;RO=6065;RPL=0;RPP=4246.07;RPPR=13138.3;RPR=1954;RUN=1;SAF=0;SAP=4246.07;SAR=1954;SRF=2;SRP=13155.6;SRR=6063;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:131:131,0:131:4645:0:0:0,-39.4349,-418.213	0/0:105:105,0:105:3730:0:0:0,-31.6081,-335.902	0/0:198:197,1:197:7039:1:36:0,-56.0057,-629.972	0/1:20:8,12:8:279:12:432:-33.2006,0,-19.4269	0/1:8:3,5:3:108:5:171:-13.3172,0,-7.66693	0/1:115:65,50:65:2319:50:1754:-123.523,0,-174.351	0/0:106:106,0:106:3749:0:0:0,-31.9092,-337.61	0/1:59:38,21:38:1349:21:748:-49.8845,0,-103.948	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.849	0/1:87:49,38:49:1743:38:1345:-95.1585,0,-130.964	0/0:89:89,0:89:3092:0:0:0,-26.7917,-278.507	0/0:68:68,0:68:2410:0:0:0,-20.47,-217.156	0/1:72:37,35:37:1293:35:1252:-91.3109,0,-94.9948	0/1:72:37,34:37:1287:34:1178:-84.7138,0,-94.521	0/1:69:37,32:37:1283:32:1129:-81.1453,0,-94.996	0/1:64:31,33:31:1065:33:1157:-85.1683,0,-76.8863	0/1:38:17,21:17:587:21:734:-54.9413,0,-41.7147	0/0:60:60,0:60:2106:0:0:0,-18.0618,-189.809	0/1:203:119,84:119:4233:84:2932:-203.002,0,-320.041	0/0:104:104,0:104:3700:0:0:0,-31.3071,-333.202	0/1:117:42,75:42:1496:75:2671:-205.415,0,-99.714	0/1:56:26,30:26:936:30:1035:-76.5976,0,-67.7018	0/0:74:73,1:73:2588:1:25:0,-19.7764,-230.668	0/0:80:79,0:79:2791:0:0:0,-23.7814,-251.109	0/1:278:161,116:161:5758:116:4106:-286.023,0,-434.629	0/1:193:108,84:108:3837:84:2961:-208.566,0,-287.37	0/1:42:18,24:18:631:24:847:-63.9055,0,-44.4724	0/1:353:183,170:183:6522:170:5982:-432.227,0,-480.802	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:79:44,35:44:1550:35:1211:-85.5081,0,-116.006	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/1:8:5,3:5:180:3:93:-6.26849,0,-14.1438	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:5:3,2:3:104:2:63:-4.478,0,-8.19766	0/1:188:98,90:98:3435:90:3192:-230.91,0,-252.77	0/0:156:156,0:156:5524:0:0:0,-46.9607,-497.288	0/0:76:76,0:76:2691:0:0:0,-22.8783,-242.433	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/0:122:121,0:121:4316:0:0:0,-36.4246,-388.255	0/0:42:42,0:42:1406:0:0:0,-12.6433,-126.824	0/1:66:36,30:36:1257:30:1067:-76.4732,0,-93.562	0/1:87:41,46:41:1454:46:1609:-118.905,0,-104.965	0/1:81:34,47:34:1191:47:1622:-121.869,0,-83.1109	0/1:60:38,22:38:1360:22:792:-53.5439,0,-104.639	0/1:87:48,39:48:1716:39:1357:-96.2366,0,-128.536	0/0:123:122,1:122:4333:1:36:0,-33.4284,-386.548	0/0:103:103,0:103:3650:0:0:0,-31.0061,-328.706	0/1:154:77,77:77:2722:77:2731:-199.675,0,-198.865	0/0:151:150,0:150:5346:0:0:0,-45.1545,-480.915	0/1:14:10,4:10:351:4:140:-8.73016,0,-27.7123	0/0:116:116,0:116:4115:0:0:0,-34.9195,-370.535	0/0:30:30,0:30:1045:0:0:0,-9.0309,-94.3575	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:109:109,0:109:3842:0:0:0,-32.8123,-345.975	0/1:23:7,16:7:252:16:564:-44.1666,0,-16.1053	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:23:13,10:13:459:10:351:-25.003,0,-34.7204	0/1:30:18,11:18:635:11:396:-26.8931,0,-48.3876	0/1:101:45,56:45:1612:56:1963:-146.538,0,-114.966	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:221:111,110:111:3922:110:3891:-283.859,0,-286.646	0/0:131:131,0:131:4664:0:0:0,-39.4349,-419.922	0/1:46:21,25:21:748:25:872:-64.9462,0,-53.7979	0/0:97:96,1:96:3439:1:36:0,-25.6016,-306.124	0/1:162:97,65:97:3413:65:2302:-158.673,0,-258.618	0/0:108:108,0:108:3820:0:0:0,-32.5112,-343.999	0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3333	0/0:83:83,0:83:2928:0:0:0,-24.9855,-263.755	0/1:75:33,42:33:1175:42:1435:-106.859,0,-83.4797	0/1:5:3,2:3:104:2:63:-4.478,0,-8.19766	0/0:80:80,0:80:2839:0:0:0,-24.0824,-255.749	0/1:65:38,27:38:1344:27:964:-67.5099,0,-101.693	0/0:206:206,0:206:7328:0:0:0,-62.0122,-659.573	0/0:172:172,0:172:6117:0:0:0,-51.7772,-550.634	0/1:87:50,37:50:1770:37:1323:-93.1825,0,-133.392	0/0:91:90,0:90:3223:0:0:0,-27.0927,-289.932	0/1:11:8,3:8:288:3:104:-6.39148,0,-22.9561	0/0:118:117,1:117:4134:1:36:0,-31.9233,-368.647	0/1:100:51,49:51:1783:49:1732:-126.059,0,-130.646	0/0:184:183,1:183:6499:1:32:0,-52.1902,-581.799	0/0:82:82,0:82:2848:0:0:0,-24.6845,-256.554	0/0:60:60,0:60:2092:0:0:0,-18.0618,-188.546	0/1:97:45,52:45:1587:52:1839:-136.59,0,-113.917	0/0:136:134,1:134:4751:1:36:0,-37.3307,-424.218	0/1:46:22,24:22:760:24:828:-60.9864,0,-54.8685	0/1:70:33,37:33:1154:37:1283:-94.695,0,-83.0927	0/0:68:68,0:68:2380:0:0:0,-20.47,-214.455	0/1:45:17,28:17:595:28:960:-73.1609,0,-40.3303	0/1:96:52,44:52:1811:44:1558:-111.611,0,-134.369	0/1:58:21,37:21:735:37:1324:-102.002,0,-49.0117	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:97:97,0:97:3437:0:0:0,-29.1999,-309.544
chr09	20587522	.	G	A	143942	PASS	AB=0.517616;ABP=35.2949;AC=52;AF=0.276596;AN=188;AO=6240;CIGAR=1X;DP=23046;DPB=23046;DPRA=1.1111;EPP=13553;EPPR=36449;GTI=0;LEN=1;MEANALT=1.06061;MQM=59.9886;MQMR=59.9925;NS=94;NUMALT=1;ODDS=23.7471;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223055;QR=598834;RO=16800;RPL=2972;RPP=33.5;RPPR=17.9521;RPR=3268;RUN=1;SAF=2972;SAP=33.5;SAR=3268;SRF=8226;SRP=18.6635;SRR=8574;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:158:158,0:158:5653:0:0:0,-47.5627,-508.888	0/0:282:281,1:281:10051:1:36:0,-81.2922,-900.927	0/0:404:404,0:404:14374:0:0:0,-121.616,-1293.42	0/0:467:463,4:463:16542:4:144:0,-127.267,-1475.13	0/1:154:66,87:66:2357:87:3113:-234.116,0,-166.107	0/1:143:81,62:81:2895:62:2211:-156.207,0,-217.738	0/1:242:108,134:108:3857:134:4779:-357.416,0,-274.475	0/0:406:404,1:404:14411:1:36:0,-118.604,-1293.21	0/1:277:129,148:129:4624:148:5271:-391.138,0,-332.937	0/0:176:176,0:176:6263:0:0:0,-52.9813,-563.766	0/1:190:79,111:79:2785:111:3984:-301.554,0,-193.693	0/0:216:215,1:215:7641:1:36:0,-61.4242,-684.131	0/0:178:178,0:178:6323:0:0:0,-53.5833,-569.165	0/1:210:103,107:103:3645:107:3824:-281.14,0,-265.037	0/1:206:98,108:98:3500:108:3865:-286.031,0,-253.199	0/1:161:68,93:68:2436:93:3323:-250.822,0,-171.029	0/1:168:79,89:79:2819:89:3200:-237.649,0,-203.376	0/1:135:66,69:66:2351:69:2484:-183.174,0,-171.21	0/0:131:131,0:131:4673:0:0:0,-39.4349,-420.731	0/1:509:252,257:252:9005:257:9180:-672.945,0,-657.203	0/0:443:443,0:443:15810:0:0:0,-133.356,-1422.59	0/1:449:164,285:164:5831:285:10195:-782.313,0,-389.742	0/1:216:120,96:120:4304:96:3437:-244.52,0,-322.477	0/0:194:193,1:193:6898:1:36:0,-54.8015,-616.51	0/0:265:265,0:265:9462:0:0:0,-79.7729,-851.54	0/1:591:264,326:264:9421:326:11657:-871.025,0,-669.884	0/1:790:427,363:427:15258:363:12938:-926.423,0,-1135.12	0/1:74:35,39:35:1256:39:1392:-103.303,0,-91.0691	0/1:784:406,378:406:14544:378:13505:-979.23,0,-1072.68	0/0:273:272,1:272:9730:1:36:0,-78.5829,-872.045	0/1:285:151,134:151:5396:134:4757:-342.491,0,-399.976	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:50:26,24:26:936:24:858:-62.4897,0,-69.508	0/1:38:16,22:16:572:22:788:-59.8057,0,-40.3743	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/1:86:40,46:40:1428:46:1641:-122.088,0,-102.929	0/1:501:231,270:231:8251:270:9673:-719.701,0,-591.787	0/0:300:300,0:300:10617:0:0:0,-90.309,-955.447	0/0:163:163,0:163:5782:0:0:0,-49.0679,-520.5	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/0:382:378,4:378:13457:4:144:0,-101.68,-1197.61	0/0:86:86,0:86:3053:0:0:0,-25.8886,-274.999	0/1:449:200,249:200:7101:249:8908:-666.538,0,-503.988	0/1:213:116,97:116:4115:97:3484:-249.651,0,-306.416	0/1:150:74,76:74:2597:76:2728:-200.608,0,-188.822	0/1:265:143,122:143:5120:122:4337:-310.731,0,-381.169	0/1:280:121,158:121:4308:158:5661:-425.409,0,-303.698	0/0:446:446,0:446:15876:0:0:0,-134.259,-1428.53	0/0:181:181,0:181:6448:0:0:0,-54.4864,-580.408	0/1:372:196,176:196:6991:176:6301:-455.198,0,-517.268	0/0:271:270,1:270:9613:1:36:0,-77.9809,-861.525	0/1:38:16,22:16:576:22:784:-59.4448,0,-40.7358	0/0:295:295,0:295:10537:0:0:0,-88.8038,-948.244	0/0:135:135,0:135:4810:0:0:0,-40.639,-433.057	0/1:45:25,20:25:885:20:705:-50.2264,0,-66.4202	0/0:344:344,0:344:12283:0:0:0,-103.554,-1105.31	0/1:116:60,56:60:2133:56:2012:-146.434,0,-157.317	0/1:31:11,20:11:392:20:716:-55.4358,0,-26.2881	0/1:47:22,25:22:784:25:889:-66.1796,0,-56.7355	0/1:262:128,134:128:4542:134:4789:-352.295,0,-330.077	0/1:240:102,138:102:3603:138:4945:-372.95,0,-252.233	0/1:40:16,24:16:567:24:845:-64.3259,0,-39.3195	0/1:385:184,201:184:6590:201:7189:-531.167,0,-477.282	0/0:354:349,5:349:12415:5:180:0,-90.0125,-1100.45	0/1:164:83,81:83:2956:81:2889:-210.876,0,-216.906	0/0:280:280,0:280:9988:0:0:0,-84.2884,-898.858	0/1:386:187,199:187:6684:199:7128:-525.38,0,-485.438	0/0:308:303,5:303:10825:5:180:0,-76.1652,-957.599	0/0:114:114,0:114:4058:0:0:0,-34.3174,-365.405	0/0:153:153,0:153:5444:0:0:0,-46.0576,-490.083	0/1:194:93,101:93:3302:101:3606:-266.347,0,-239	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	0/0:297:297,0:297:10530:0:0:0,-89.4059,-947.619	0/1:184:88,96:88:3124:96:3441:-254.511,0,-225.996	0/0:472:468,4:468:16681:4:144:0,-128.773,-1487.63	0/0:420:419,1:419:14945:1:36:0,-122.834,-1341.18	0/1:329:170,159:170:6076:159:5674:-411.713,0,-447.902	0/0:266:263,3:263:9366:3:108:0,-69.9988,-832.83	0/1:52:27,25:27:964:25:900:-65.6675,0,-71.4233	0/0:293:293,0:293:10465:0:0:0,-88.2018,-941.769	0/1:424:194,230:194:6925:230:8189:-609.388,0,-495.68	0/0:418:416,0:416:14852:0:0:0,-125.228,-1336.08	0/0:197:197,0:197:7017:0:0:0,-59.3029,-631.593	0/0:173:173,0:173:6199:0:0:0,-52.0782,-558.006	0/1:190:106,84:106:3761:84:2999:-212.946,0,-281.495	0/0:389:381,8:381:13527:8:288:0,-90.8333,-1190.96	0/1:79:35,44:35:1252:44:1574:-118.17,0,-89.2037	0/1:160:75,85:75:2666:85:3041:-225.753,0,-192.018	0/0:194:194,0:194:6878:0:0:0,-58.3998,-619.093	0/1:140:76,64:76:2704:64:2292:-164.397,0,-201.458	0/1:269:136,133:136:4846:133:4775:-348.928,0,-355.318	0/1:167:59,108:59:2098:108:3843:-295.793,0,-138.816	0/0:221:221,0:221:788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chr09	20593430	.	TG	CG,CA	165528	PASS	AB=0.471236,0.52754;ABP=26.4952,24.539;AC=136,50;AF=0.731183,0.268817;AN=186;AO=4359,1735;CIGAR=1X1M,2X;DP=6102;DPB=6102;DPRA=0,0.93338;EPP=31.4656,40.4685;EPPR=9.52472;GTI=0;LEN=1,2;MEANALT=1.67742,2.05172;MQM=59.9564,59.8761;MQMR=60;NS=93;NUMALT=2;ODDS=2.01947;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=154762,60639;QR=86;RO=3;RPL=32,6;RPP=9192.55,3718.58;RPPR=9.52472;RPR=4327,1729;RUN=1,1;SAF=2331,960;SAP=48.7457,45.8453;SAR=2028,775;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,14,1:0:0:14,1:500,36:-44.9765,-4.21442,0,-42.0389,-0.917175,-41.7379	1/1:38:0,38,0:0:0:38,0:1356,0:-122.34,-11.4391,0,-122.34,-11.4391,-122.34	1/1:72:0,72,0:0:0:72,0:2560,0:-230.64,-21.6742,0,-230.64,-21.6742,-230.64	1/1:80:0,80,0:0:0:80,0:2830,0:-254.939,-24.0824,0,-254.939,-24.0824,-254.939	1/2:38:0,23,15:0:0:23,15:819,533:-110.54,-43.7877,-36.864,-67.1079,0,-62.5924	1/2:30:0,16,14:0:0:16,14:576,485:-86.7684,-39.7625,-34.946,-47.3585,0,-43.1441	1/2:62:0,26,36:0:0:26,36:918,1244:-176.179,-101.42,-93.5931,-75.1085,0,-64.2714	1/1:76:0,76,0:0:0:76,0:2705,0:-243.685,-22.8783,0,-243.685,-22.8783,-243.685	1/2:60:0,30,30:0:0:30,30:1071,1071:-174.985,-87.6712,-78.6403,-87.6707,0,-78.6398	1/1:42:0,42,0:0:0:42,0:1488,0:-134.215,-12.6433,0,-134.215,-12.6433,-134.215	1/2:100:0,49,51:0:0:49,51:1744,1779:-287.177,-145.035,-130.285,-142.494,0,-127.141	1/1:134:0,134,0:0:0:134,0:4654,0:-419.024,-40.338,0,-419.024,-40.338,-419.024	1/1:113:0,113,0:0:0:113,0:3997,0:-359.914,-34.0164,0,-359.914,-34.0164,-359.914	1/2:115:0,54,61:0:0:54,61:1907,2145:-330.253,-174.954,-158.698,-155.651,0,-137.289	1/2:113:0,53,60:0:0:53,60:1896,2101:-325.899,-171.29,-155.335,-154.963,0,-136.902	1/2:108:0,56,52:0:0:56,52:1992,1800:-308.953,-146.607,-129.749,-162.697,0,-147.043	1/2:115:0,64,51:0:0:64,51:2291,1737:-328.087,-141.254,-121.988,-187.182,0,-171.829	1/2:94:0,45,49:0:0:45,49:1612,1720:-271.8,-140.331,-126.785,-131.824,0,-117.073	1/1:56:0,56,0:0:0:56,0:1990,0:-179.373,-16.8577,0,-179.373,-16.8577,-179.373	1/2:61:0,25,36:0:0:25,36:900,1264:-176.659,-103.22,-95.6939,-73.7953,0,-62.9582	1/1:67:0,67,0:0:0:67,0:2383,0:-214.712,-20.169,0,-214.712,-20.169,-214.712	1/2:23:0,10,13:0:0:10,13:360,457:-66.9271,-37.5492,-34.5389,-29.734,0,-25.8206	1/2:26:0,13,13:0:0:13,13:468,455:-75.5592,-37.3677,-33.4544,-38.5463,0,-34.6329	1/1:32:0,32,0:0:0:32,0:1144,0:-103.27,-9.63296,0,-103.27,-9.63296,-103.27	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/2:81:0,36,44:0:0:36,44:1292,1526:-229.512,-124.118,-113.281,-105.494,0,-92.2485	1/2:106:0,51,55:0:0:51,55:1802,1934:-304.304,-157.776,-142.423,-146.881,0,-130.324	1/2:75:0,32,43:0:0:32,43:1124,1505:-214.278,-122.796,-113.163,-91.8322,0,-78.888	1/2:91:0,47,44:0:0:47,44:1675,1549:-262.83,-126.296,-112.148,-136.888,0,-123.643	1/1:43:0,43,0:0:0:43,0:1539,0:-138.791,-12.9443,0,-138.791,-12.9443,-138.791	1/2:50:0,21,29:0:0:21,29:756,995:-142.818,-81.1252,-74.8036,-62.0456,0,-53.3157	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:5:0,1,4:0:0:1,4:36,142:-14.8635,-11.9251,-11.6241,-3.29724,0,-2.09312	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:5:0,2,3:0:0:2,3:72,106:-14.8635,-8.98601,-8.38395,-6.23466,0,-5.33157	1/2:259:0,130,129:0:0:130,129:4607,4574:-748.302,-372.996,-333.863,-375.66,0,-336.827	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/1:95:0,94,0:0:0:94,0:3274,0:-294.631,-28.2968,0,-294.631,-28.2968,-294.631	.:.:.:.:.:.:.:.	1/1:64:0,61,3:0:0:61,3:2165,103:-194.736,-18.3628,0,-186.373,-9.65632,-185.47	1/1:48:0,48,0:0:0:48,0:1720,0:-155.086,-14.4494,0,-155.086,-14.4494,-155.086	1/2:58:0,27,31:0:0:27,31:968,1064:-165.688,-86.7293,-78.6015,-79.3096,0,-69.9776	1/2:100:0,47,53:0:0:47,53:1665,1853:-286.726,-151.091,-136.942,-135.987,0,-120.032	1/2:88:0,41,47:0:0:41,47:1444,1634:-250.749,-133.188,-120.845,-117.911,0,-103.762	1/2:52:0,21,31:0:0:21,31:735,1089:-148.785,-88.9856,-82.6639,-60.1498,0,-50.8178	1/2:45:0,18,27:0:0:18,27:644,958:-130.924,-78.4079,-72.9894,-52.8721,0,-44.7442	1/1:74:0,73,1:0:0:73,1:2599,25:-233.907,-21.9752,0,-231.96,-19.7764,-231.659	1/1:41:0,41,0:0:0:41,0:1460,0:-131.696,-12.3422,0,-131.696,-12.3422,-131.696	1/2:47:0,23,24:0:0:23,24:828,843:-136.528,-68.9634,-62.0397,-67.9204,0,-60.6957	1/1:42:1,41,0:1:36:41,0:1438,0:-126.114,-9.04499,0,-126.415,-12.3422,-129.352	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:57:0,57,0:0:0:57,0:2029,0:-182.881,-17.1587,0,-182.881,-17.1587,-182.881	1/1:22:0,22,0:0:0:22,0:778,0:-70.3427,-6.62266,0,-70.3427,-6.62266,-70.3427	1/2:6:0,4,2:0:0:4,2:144,67:-17.5081,-5.74114,-4.53702,-12.1095,0,-11.5074	1/1:48:0,48,0:0:0:48,0:1680,0:-151.203,-14.4494,0,-151.203,-14.4494,-151.203	1/2:28:0,12,16:0:0:12,16:432,574:-82.4274,-47.1778,-43.5655,-35.6088,0,-30.7924	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,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chr09	20593469	.	A	T	114843	PASS	AB=0.470009;ABP=28.4087;AC=136;AF=0.731183;AN=186;AO=4327;CIGAR=1X;DP=6066;DPB=6066;DPRA=0;EPP=12.7064;EPPR=32.3421;GTI=0;LEN=1;MEANALT=1.05376;MQM=59.9563;MQMR=59.9042;NS=93;NUMALT=1;ODDS=1.75347;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154017;QR=62030;RO=1733;RPL=4327;RPP=9398.97;RPPR=3766.17;RPR=0;RUN=1;SAF=2233;SAP=12.7064;SAR=2094;SRF=943;SRP=32.3421;SRR=790;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:1,12:1:36:12:424:-34.8981,-0.315115,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:71:0,71:0:0:71:2527:-227.682,-21.3731,0	1/1:80:0,80:0:0:80:2855:-257.188,-24.0824,0	0/1:38:15,23:15:540:23:828:-63.405,0,-37.4974	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9636	0/1:63:40,23:40:1427:23:805:-53.8026,0,-109.762	1/1:74:0,74:0:0:74:2626:-236.587,-22.2762,0	0/1:60:30,30:30:1080:30:1071:-78.6398,0,-79.4515	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:104:54,50:54:1927:50:1772:-128.453,0,-142.399	1/1:135:0,135:0:0:135:4831:-434.933,-40.6391,0	1/1:111:0,110:0:0:110:3910:-351.873,-33.1133,0	0/1:115:62,53:62:2228:53:1887:-135.489,0,-166.165	0/1:108:59,49:59:2108:49:1759:-126.083,0,-157.464	0/1:106:48,56:48:1724:56:1991:-147.797,0,-123.774	0/1:113:50,63:50:1796:63:2248:-168.559,0,-127.906	0/1:89:48,41:48:1724:41:1468:-105.624,0,-128.654	1/1:57:0,57:0:0:57:2030:-182.971,-17.1587,0	0/1:62:37,25:37:1306:25:891:-61.8449,0,-99.1706	1/1:67:0,67:0:0:67:2345:-211.298,-20.169,0	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:27:14,13:14:500:13:468:-34.3318,0,-37.2084	1/1:33:1,32:1:36:32:1148:-100.032,-6.33572,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:84:45,39:45:1616:39:1404:-101.362,0,-120.443	0/1:104:55,49:55:1976:49:1760:-127.377,0,-146.808	0/1:73:42,31:42:1495:31:1103:-77.6046,0,-112.869	0/1:92:44,48:44:1584:48:1693:-124.959,0,-115.157	1/1:45:0,45:0:0:45:1611:-145.263,-13.5464,0	0/1:50:28,22:28:1000:22:783:-55.7414,0,-75.2639	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:5:4,1:4:131:1:36:-2.09312,0,-10.6083	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:259:129,130:129:4636:130:4653:-340.963,0,-339.434	1/1:40:0,40:0:0:40:1412:-127.375,-12.0412,0	1/1:92:0,92:0:0:92:3259:-293.53,-27.6948,0	.:.:.:.:.:.:.:.	1/1:64:3,61:3:108:61:2130:-181.866,-9.19075,0	1/1:47:0,47:0:0:47:1675:-151.036,-14.1484,0	0/1:58:31,27:31:1103:27:951:-68.4446,0,-82.0976	0/1:100:52,47:52:1855:47:1684:-121.685,0,-137.067	0/1:86:47,39:47:1680:39:1381:-98.6982,0,-125.593	0/1:52:31,21:31:1108:21:752:-52.3527,0,-84.3774	0/1:43:26,17:26:936:17:599:-41.2938,0,-71.6152	1/1:72:1,71:1:36:71:2526:-223.993,-18.0759,0	1/1:40:0,40:0:0:40:1418:-127.916,-12.0412,0	0/1:48:25,23:25:896:23:813:-59.0397,0,-66.5109	1/1:45:0,45:0:0:45:1594:-143.749,-13.5464,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:57:0,57:0:0:57:2025:-182.521,-17.1587,0	1/1:24:0,24:0:0:24:849:-76.7278,-7.22472,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-4.9715	1/1:48:0,48:0:0:48:1705:-153.623,-14.4494,0	0/1:27:15,12:15:540:12:419:-29.9149,0,-40.8087	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:39:20,19:20:720:19:660:-47.9812,0,-53.3882	0/1:132:74,58:74:2652:58:2076:-147.375,0,-198.912	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:41:20,21:20:712:21:756:-56.025,0,-52.0562	1/1:71:0,71:0:0:71:2532:-228.13,-21.3731,0	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5702	1/1:31:2,29:2:72:29:1013:-84.6424,-2.49521,0	0/1:59:34,25:34:1209:25:879:-61.666,0,-91.3534	1/1:88:0,88:0:0:88:3115:-280.574,-26.4906,0	1/1:74:2,72:2:72:72:2580:-225.612,-15.4395,0	1/1:33:0,33:0:0:33:1180:-106.5,-9.93399,0	0/1:151:81,70:81:2904:70:2502:-179.976,0,-216.14	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	1/1:26:0,26:0:0:26:910:-82.2141,-7.82678,0	0/1:44:26,18:26:919:18:644:-45.0194,0,-69.7808	1/1:59:0,59:0:0:59:2084:-187.828,-17.7608,0	1/1:56:0,55:0:0:55:1948:-175.234,-16.5567,0	0/1:54:20,34:20:716:34:1206:-92.5895,0,-48.5121	1/1:59:1,58:1:36:58:2047:-180.902,-14.1625,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:64:1,63:1:36:63:2251:-199.254,-15.6676,0	0/1:45:21,24:21:748:24:860:-64.1755,0,-54.0989	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:134:0,134:0:0:134:4761:-428.625,-40.338,0	1/1:148:0,148:0:0:148:5300:-477.133,-44.5524,0	0/1:121:63,58:63:2256:58:2060:-149.244,0,-166.878	1/1:221:1,220:1:36:220:7844:-702.391,-62.9294,0	0/1:49:20,29:20:708:29:1040:-79.1639,0,-48.2704	0/1:106:54,52:54:1923:52:1844:-134.328,0,-141.437	1/1:130:0,129:0:0:129:4592:-413.085,-38.8329,0	0/1:80:36,44:36:1287:44:1575:-117.958,0,-92.0504	0/1:117:59,58:59:2120:58:2056:-150.084,0,-155.848	0/1:106:85,21:85:3040:21:756:-36.458,0,-241.919	1/1:42:0,42:0:0:42:1504:-135.654,-12.6433,0	1/1:182:0,182:0:0:182:6455:-581.038,-54.7875,0
chr09	20611785	.	G	A	8340.86	PASS	AB=0.290201;ABP=1013.47;AC=49;AF=0.260638;AN=188;AO=773;CIGAR=1X;DP=6394;DPB=6394;DPRA=0.713541;EPP=1681.56;EPPR=12204.5;GTI=13;LEN=1;MEANALT=1.03636;MQM=59.9754;MQMR=59.9847;NS=94;NUMALT=1;ODDS=0.751224;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27508;QR=196159;RO=5619;RPL=0;RPP=1681.56;RPPR=12204.5;RPR=773;RUN=1;SAF=0;SAP=1681.56;SAR=773;SRF=0;SRP=12204.5;SRR=5619;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:265:0:0:0,-2.40824,-24.1721	0/0:153:153,0:153:5413:0:0:0,-46.0576,-487.303	0/0:74:73,1:73:2531:1:32:0,-19.0769,-224.84	0/0:181:181,0:181:6372:0:0:0,-54.4864,-573.559	0/1:26:14,12:14:496:12:424:-30.6696,0,-37.1475	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:58:37,21:37:1284:21:743:-49.7336,0,-98.3982	0/0:131:131,0:131:4586:0:0:0,-39.4349,-412.91	0/1:24:18,6:18:644:6:216:-12.5658,0,-51.0659	0/0:49:49,0:49:1712:0:0:0,-14.7505,-154.363	0/1:76:53,23:53:1862:23:812:-50.5226,0,-144.98	0/0:76:76,0:76:2649:0:0:0,-22.8783,-238.656	0/0:54:53,1:53:1853:1:36:0,-12.6573,-163.45	0/1:108:80,28:80:2792:28:992:-57.0832,0,-219.011	0/1:34:23,11:23:815:11:392:-25.385,0,-63.4357	0/1:44:29,15:29:1016:15:519:-33.7914,0,-78.5064	0/1:60:37,23:37:1271:23:815:-55.609,0,-96.6249	0/1:41:27,14:27:938:14:504:-33.3559,0,-72.3896	0/0:70:70,0:70:2428:0:0:0,-21.0721,-218.774	0/1:121:88,33:88:3092:33:1173:-69.4505,0,-242.082	0/0:83:83,0:83:2851:0:0:0,-24.9855,-256.827	0/1:34:16,18:16:576:18:639:-47.6032,0,-41.94	0/1:21:17,4:17:604:4:144:-6.99199,0,-48.369	0/0:41:41,0:41:1419:0:0:0,-12.3422,-128.002	0/0:30:30,0:30:1030:0:0:0,-9.0309,-93.0041	0/1:179:138,41:138:4868:41:1476:-79.2518,0,-384.392	0/1:108:70,38:70:2427:38:1364:-90.5495,0,-186.172	0/1:30:21,9:21:731:9:320:-20.1115,0,-57.0795	0/1:107:79,28:79:2747:28:996:-57.7447,0,-215.259	0/0:78:78,0:78:2684:0:0:0,-23.4803,-241.803	0/1:28:19,9:19:671:9:315:-20.2584,0,-52.287	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:131:83,48:83:2854:48:1694:-113.281,0,-217.664	0/0:125:125,0:125:4324:0:0:0,-37.6287,-389.339	0/0:104:104,0:104:3588:0:0:0,-31.3071,-323.123	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:126:125,1:125:4299:1:32:0,-34.7305,-383.874	0/0:44:44,0:44:1552:0:0:0,-13.2453,-139.972	0/1:54:35,18:35:1224:18:640:-41.6529,0,-94.1855	0/1:40:31,9:31:1087:9:320:-17.1012,0,-86.0972	0/1:33:26,7:26:924:7:252:-13.095,0,-73.5437	0/1:25:20,5:20:678:5:180:-9.02631,0,-53.8076	0/1:57:46,11:46:1577:11:396:-18.824,0,-125.054	0/0:132:132,0:132:4642:0:0:0,-39.736,-417.945	0/0:93:93,0:93:3279:0:0:0,-27.9958,-295.33	0/1:78:66,12:66:2290:12:428:-15.3785,0,-182.877	0/0:89:89,0:89:3086:0:0:0,-26.7917,-277.966	0/1:6:5,1:5:158:1:36:-1.79209,0,-12.7256	0/0:120:120,0:120:4230:0:0:0,-36.1236,-380.883	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/1:6:5,1:5:165:1:36:-1.79209,0,-13.3674	0/0:102:101,1:101:3559:1:36:0,-27.1068,-316.922	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:50:29,20:29:1022:20:708:-48.9356,0,-77.1808	0/1:133:86,47:86:3018:47:1671:-110.64,0,-231.817	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:89:80,9:80:2809:9:324:-2.71419,0,-226.257	0/0:128:128,0:128:4536:0:0:0,-38.5318,-408.409	0/1:36:29,7:29:1027:7:248:-11.8271,0,-81.9051	0/0:84:84,0:84:2907:0:0:0,-25.2865,-261.864	0/1:76:60,16:60:2097:16:576:-29.2967,0,-166.118	0/0:85:85,0:85:2991:0:0:0,-25.5875,-269.422	0/0:71:71,0:71:2436:0:0:0,-21.3731,-219.495	0/0:67:67,0:67:2361:0:0:0,-20.169,-211.558	0/1:86:53,33:53:1851:33:1172:-79.8989,0,-140.978	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:76:76,0:76:2643:0:0:0,-22.8783,-238.113	0/1:33:20,13:20:707:13:464:-32.1635,0,-54.0206	0/0:105:105,0:105:3647:0:0:0,-31.6081,-328.436	0/0:137:136,1:136:4767:1:36:0,-37.6428,-425.592	0/1:58:37,21:37:1319:21:756:-50.9059,0,-101.551	0/0:125:125,0:125:4394:0:0:0,-37.6287,-395.635	0/1:7:5,2:5:171:2:72:-4.72951,0,-13.6182	0/0:93:93,0:93:3282:0:0:0,-27.9958,-295.602	0/1:53:42,11:42:1487:11:396:-20.0282,0,-118.169	0/0:133:133,0:133:4632:0:0:0,-40.037,-417.05	0/0:106:106,0:106:3645:0:0:0,-31.9092,-328.259	0/0:71:70,1:70:2437:1:36:0,-17.7749,-215.988	0/1:59:47,12:47:1617:12:423:-20.6443,0,-128.055	0/0:165:165,0:165:5762:0:0:0,-49.6699,-518.707	0/1:39:26,13:26:916:13:460:-29.9952,0,-71.0163	0/1:80:62,18:62:2152:18:640:-33.8469,0,-169.864	0/0:83:83,0:83:2869:0:0:0,-24.9855,-258.447	0/1:75:59,16:59:2051:16:572:-29.2362,0,-162.282	0/1:125:85,40:85:2920:40:1420:-90.4687,0,-225.41	0/1:40:24,16:24:839:16:568:-39.4103,0,-63.7861	0/0:84:84,0:84:2894:0:0:0,-25.2865,-260.695	0/0:96:96,0:96:3328:0:0:0,-28.8989,-299.742
chr09	20611794	.	C	A	8460.59	PASS	AB=0.292822;ABP=984.652;AC=49;AF=0.260638;AN=188;AO=773;CIGAR=1X;DP=6369;DPB=6369;DPRA=0.671265;EPP=1681.56;EPPR=12139.4;GTI=12;LEN=1;MEANALT=1.06;MQM=59.9715;MQMR=59.9873;NS=94;NUMALT=1;ODDS=2.22996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27547;QR=198763;RO=5589;RPL=0;RPP=1681.56;RPPR=12139.4;RPR=773;RUN=1;SAF=0;SAP=1681.56;SAR=773;SRF=0;SRP=12139.4;SRR=5589;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:150:150,0:150:5364:0:0:0,-45.1545,-482.893	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.485	0/0:177:177,0:177:6329:0:0:0,-53.2823,-569.665	0/1:26:14,12:14:500:12:432:-31.3929,0,-37.5094	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:55:36,19:36:1283:19:676:-44.6113,0,-99.216	0/0:130:130,0:130:4630:0:0:0,-39.1339,-416.862	0/1:25:18,7:18:644:7:248:-15.1384,0,-50.7648	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/1:76:52,24:52:1864:24:848:-53.7614,0,-145.161	0/0:78:77,0:77:2670:0:0:0,-23.1793,-240.184	0/0:55:55,0:55:1911:0:0:0,-16.5566,-172.265	0/1:106:79,26:79:2794:26:936:-52.5915,0,-219.733	0/1:34:23,11:23:828:11:396:-25.7477,0,-64.6091	0/1:43:29,14:29:1036:14:485:-31.0327,0,-80.6096	0/1:59:36,23:36:1274:23:824:-56.7225,0,-97.2007	0/1:40:26,14:26:928:14:504:-33.6569,0,-71.7971	0/0:67:67,0:67:2350:0:0:0,-20.169,-211.757	0/1:123:90,33:90:3213:33:1176:-69.1207,0,-252.365	0/0:85:85,0:85:2970:0:0:0,-25.5875,-267.531	0/1:34:16,17:16:576:17:608:-44.796,0,-41.9187	0/1:22:18,4:18:644:4:144:-6.69096,0,-51.6679	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.136	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/1:179:136,43:136:4858:43:1548:-85.7287,0,-383.489	0/1:107:69,38:69:2476:38:1364:-90.8505,0,-190.883	0/1:31:22,9:22:755:9:324:-20.1739,0,-58.9321	0/1:109:81,28:81:2867:28:999:-57.4122,0,-225.454	0/0:75:75,0:75:2669:0:0:0,-22.5772,-240.454	0/1:27:18,9:18:644:9:324:-21.378,0,-50.1628	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:130:83,47:83:2925:47:1665:-110.991,0,-224.352	0/0:128:128,0:128:4543:0:0:0,-38.5318,-409.038	0/0:101:101,0:101:3560:0:0:0,-30.404,-320.61	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:123:121,2:121:4322:2:72:0,-30.19,-382.189	0/0:44:44,0:44:1553:0:0:0,-13.2453,-140.06	0/1:55:37,18:37:1328:18:635:-40.9203,0,-103.266	0/1:41:32,9:32:1144:9:311:-15.9815,0,-90.9273	0/1:34:27,7:27:963:7:251:-12.7028,0,-76.7509	0/1:23:18,5:18:644:5:180:-9.62837,0,-51.3669	0/1:56:45,11:45:1598:11:396:-19.1251,0,-127.251	0/0:129:129,0:129:4580:0:0:0,-38.8329,-412.367	0/0:92:92,0:92:3263:0:0:0,-27.6948,-293.89	0/1:75:63,12:63:2256:12:428:-16.2816,0,-180.726	0/0:91:91,0:91:3226:0:0:0,-27.3937,-290.56	0/1:5:4,1:4:135:1:36:-2.09312,0,-10.9774	0/0:124:124,0:124:4411:0:0:0,-37.3277,-397.165	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:52:29,23:29:1036:23:824:-58.8298,0,-77.9004	0/1:134:87,47:87:3097:47:1663:-109.619,0,-238.619	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:89:79,10:79:2832:10:360:-5.95263,0,-228.327	0/0:127:127,0:127:4553:0:0:0,-38.2308,-409.934	0/1:36:28,8:28:1008:8:288:-15.4303,0,-80.1993	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/1:74:57,17:57:2048:17:612:-33.1372,0,-162.315	0/0:88:87,0:87:3091:0:0:0,-26.1896,-278.059	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/0:68:66,0:66:2372:0:0:0,-19.868,-212.208	0/1:88:55,33:55:1968:33:1167:-78.8449,0,-150.904	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/1:33:20,13:20:720:13:468:-32.5257,0,-55.1948	0/0:104:104,0:104:3689:0:0:0,-31.3071,-332.214	0/0:141:141,0:141:5033:0:0:0,-42.4452,-453.116	0/1:59:37,21:37:1328:21:737:-48.8322,0,-102.003	0/0:125:125,0:125:4423:0:0:0,-37.6287,-398.242	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:93:93,0:93:3316:0:0:0,-27.9958,-298.659	0/1:54:43,11:43:1544:11:396:-19.7271,0,-122.997	0/0:131:131,0:131:4670:0:0:0,-39.4349,-420.462	0/0:104:104,0:104:3683:0:0:0,-31.3071,-331.673	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.918	0/1:58:47,11:47:1661:11:396:-18.523,0,-132.316	0/0:167:167,0:167:5928:0:0:0,-50.272,-533.632	0/1:39:25,14:25:896:14:496:-33.2341,0,-69.2202	0/1:78:60,18:60:2122:18:640:-34.449,0,-167.767	0/0:83:83,0:83:2956:0:0:0,-24.9855,-266.275	0/1:74:57,17:57:2009:17:589:-31.0566,0,-158.805	0/1:122:82,40:82:2897:40:1427:-92.0011,0,-224.241	0/1:42:26,16:26:924:16:562:-38.2656,0,-70.8344	0/0:85:85,0:85:3027:0:0:0,-25.5875,-272.661	0/0:96:96,0:96:3396:0:0:0,-28.8989,-305.856
chr09	20626201	.	CTAC	CTAT,TTAT	145550	PASS	AB=0.591273,0.404848;ABP=301.494,327.402;AC=139,49;AF=0.739362,0.260638;AN=188;AO=6342,1681;CIGAR=3M1X,1X2M1X;DP=8057;DPB=8057;DPRA=0,1.08734;EPP=13395,3541.21;EPPR=9.52472;GTI=4;LEN=1,4;MEANALT=1.91489,2.28571;MQM=32.6466,45.699;MQMR=59.3333;NS=94;NUMALT=2;ODDS=0.176541;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=227226,59597;QR=102;RO=3;RPL=6298,1668;RPP=13395,3541.21;RPPR=9.52472;RPR=44,13;RUN=1,1;SAF=0,0;SAP=13774.5,3653.26;SAR=6342,1681;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:66:0,66,0:0:0:66,0:2376,0:-183.902,-19.868,0,-183.902,-19.868,-183.902	1/1:54:0,54,0:0:0:54,0:1938,0:-148.831,-16.2556,0,-148.831,-16.2556,-148.831	1/1:102:0,102,0:0:0:102,0:3653,0:-284.232,-30.7051,0,-284.232,-30.7051,-284.232	1/1:135:0,133,1:0:0:133,1:4768,36:-367.571,-40.037,0,-364.669,-37.1064,-364.368	1/2:85:0,53,31:0:0:53,31:1904,1109:-222.372,-89.3421,-73.3875,-133.129,0,-123.797	1/2:21:0,18,3:0:0:18,3:640,108:-53.8871,-9.06104,-3.6425,-45.1754,0,-44.2723	1/2:118:0,64,53:0:0:64,53:2296,1875:-310.854,-149.581,-130.315,-161.412,0,-145.458	1/1:115:0,114,0:0:0:114,0:4093,0:-315.97,-34.3174,0,-315.97,-34.3174,-315.97	1/2:87:0,47,40:0:0:47,40:1688,1431:-231.394,-115.137,-100.989,-116.588,0,-104.547	1/1:81:0,81,0:0:0:81,0:2908,0:-226.434,-24.3834,0,-226.434,-24.3834,-226.434	1/2:76:0,44,32:0:0:44,32:1580,1126:-200.755,-90.6791,-77.4338,-110.408,0,-100.775	1/1:158:0,158,0:0:0:158,0:5673,0:-442.618,-47.5627,0,-442.618,-47.5627,-442.618	1/1:130:0,130,0:0:0:130,0:4642,0:-362.048,-39.1339,0,-362.048,-39.1339,-362.048	1/2:92:0,62,30:0:0:62,30:2228,1070:-241.069,-86.3342,-67.6703,-155.073,0,-146.042	1/2:92:0,54,37:0:0:54,37:1944,1332:-240.898,-107.306,-91.0502,-133.629,0,-122.491	1/2:73:0,48,25:0:0:48,25:1716,890:-191.33,-71.8158,-57.3663,-119.852,0,-112.326	1/2:49:0,31,18:0:0:31,18:1116,648:-128.974,-52.5529,-43.2209,-76.7589,0,-71.3404	1/2:52:0,34,18:0:0:34,18:1220,645:-137.368,-52.3361,-42.1011,-85.3714,0,-79.9529	1/1:42:0,42,0:0:0:42,0:1512,0:-117.024,-12.6433,0,-117.024,-12.6433,-117.024	1/2:89:0,53,35:0:0:53,35:1897,1236:-230.073,-99.5644,-83.6098,-130.542,0,-120.006	1/1:95:0,95,0:0:0:95,0:3403,0:-264.604,-28.5979,0,-264.604,-28.5979,-264.604	1/2:107:0,47,60:0:0:47,60:1683,2146:-287.079,-172.416,-158.267,-114.989,0,-96.9273	1/2:94:0,55,39:0:0:55,39:1976,1396:-245.023,-112.853,-96.2961,-132.502,0,-120.762	1/1:22:0,20,0:0:0:20,0:720,0:-56.0649,-6.0206,0,-56.0649,-6.0206,-56.0649	1/1:130:0,130,0:0:0:130,0:4667,0:-360.596,-39.1339,0,-360.596,-39.1339,-360.596	1/2:183:0,98,85:0:0:98,85:3509,3005:-484.967,-242.348,-212.847,-242.95,0,-217.363	1/2:176:0,79,97:0:0:79,97:2829,3431:-470.463,-276.313,-252.532,-194.476,0,-165.276	1/2:57:0,35,22:0:0:35,22:1260,788:-150.422,-63.3136,-52.7775,-87.4436,0,-80.821	1/2:153:0,89,64:0:0:89,64:3196,2282:-401.717,-184.057,-157.266,-217.992,0,-198.726	1/1:84:0,84,0:0:0:84,0:3020,0:-234.065,-25.2865,0,-234.065,-25.2865,-234.065	1/2:83:0,57,26:0:0:57,26:2034,914:-212.169,-73.7447,-56.5859,-138.757,0,-130.931	1/1:14:0,14,0:0:0:14,0:500,0:-38.9756,-4.21442,0,-38.9756,-4.21442,-38.9756	1/2:14:0,12,2:0:0:12,2:432,72:-36.245,-6.15931,-2.54695,-30.4353,0,-29.8332	1/2:5:0,4,1:0:0:4,1:144,30:-11.9627,-2.68821,-1.48409,-9.57193,0,-9.2709	1/1:17:0,17,0:0:0:17,0:612,0:-48.104,-5.11751,0,-48.104,-5.11751,-48.104	1/2:13:0,8,5:0:0:8,5:265,174:-33.2864,-14.3407,-11.9324,-19.2719,0,-17.7668	1/2:308:1,202,104:1:30:202,104:7238,3694:-788.767,-294.685,-236.275,-492.02,0,-463.111	1/1:141:0,141,0:0:0:141,0:5002,0:-388.319,-42.4452,0,-388.319,-42.4452,-388.319	1/1:56:0,55,0:0:0:55,0:1976,0:-150.976,-16.5567,0,-150.976,-16.5567,-150.976	1/1:4:0,4,0:0:0:4,0:144,0:-11.5575,-1.20412,0,-11.5575,-1.20412,-11.5575	1/1:138:0,134,4:0:0:134,4:4824,144:-370.358,-40.338,0,-358.749,-28.3753,-357.545	1/1:45:0,45,0:0:0:45,0:1597,0:-123.108,-13.5464,0,-123.108,-13.5464,-123.108	1/2:147:0,95,50:0:0:95,50:3416,1758:-378.086,-141.524,-112.926,-236.609,0,-221.558	1/2:59:0,36,23:0:0:36,23:1281,817:-152.338,-65.7681,-54.931,-86.9008,0,-79.9771	1/2:107:0,78,29:0:0:78,29:2789,1038:-273.783,-83.8033,-60.323,-190.319,0,-181.589	1/2:131:0,68,62:0:0:68,62:2444,2191:-342.133,-173.619,-153.149,-168.543,0,-149.879	1/2:127:0,87,40:0:0:87,40:3107,1403:-328.486,-113.29,-87.1001,-215.531,0,-203.49	1/1:104:0,102,0:0:0:102,0:3638,0:-283.02,-30.7051,0,-283.02,-30.7051,-283.02	1/1:123:0,122,1:0:0:122,1:4344,36:-333.892,-36.7257,0,-330.99,-33.4681,-330.689	1/2:99:0,75,24:0:0:75,24:2692,844:-255.214,-68.2616,-45.6843,-187.291,0,-180.067	1/1:31:0,31,0:0:0:31,0:1097,0:-84.1385,-9.33193,0,-84.1385,-9.33193,-84.1385	1/2:5:0,4,1:0:0:4,1:144,36:-13.1323,-3.25759,-2.05347,-10.2212,0,-9.92014	1/1:102:0,102,0:0:0:102,0:3657,0:-283.274,-30.7051,0,-283.274,-30.7051,-283.274	1/1:33:0,33,0:0:0:33,0:1188,0:-91.0297,-9.93399,0,-91.0297,-9.93399,-91.0297	1/2:31:0,15,16:0:0:15,16:540,569:-81.7505,-46.1442,-41.6287,-35.9299,0,-31.1134	1/1:111:0,109,0:0:0:109,0:3908,0:-297.526,-32.8123,0,-297.526,-32.8123,-297.526	1/2:62:0,35,26:0:0:35,26:1260,934:-162.746,-75.1683,-64.6322,-87.6026,0,-79.7758	1/1:14:0,14,0:0:0:14,0:504,0:-39.4779,-4.21442,0,-39.4779,-4.21442,-39.4779	1/2:3:0,1,2:0:0:1,2:36,72:-8.65506,-6.15931,-5.85828,-2.82261,0,-2.22055	1/2:46:0,30,15:0:0:30,15:1080,518:-115.966,-40.943,-31.9121,-75.1038,0,-70.5883	1/2:165:0,109,55:0:0:109,55:3906,1960:-426.011,-156.964,-124.152,-269.044,0,-252.487	1/1:8:0,8,0:0:0:8,0:288,0:-22.7395,-2.40824,0,-22.7395,-2.40824,-22.7395	1/2:122:0,67,55:0:0:67,55:2397,1912:-317.407,-154.005,-133.836,-163.729,0,-147.172	1/1:174:0,174,0:0:0:174,0:6242,0:-480.212,-52.3792,0,-480.212,-52.3792,-480.212	1/2:37:0,13,24:0:0:13,24:464,854:-100.161,-67.6993,-63.7859,-32.7845,0,-25.5598	1/1:81:0,79,1:0:0:79,1:2844,36:-219.819,-23.7814,0,-217.437,-21.3669,-217.136	1/2:100:0,50,50:0:0:50,50:1796,1782:-266.6,-142.586,-127.535,-124.342,0,-109.291	1/1:69:0,69,0:0:0:69,0:2476,0:-191.954,-20.7711,0,-191.954,-20.7711,-191.954	1/1:37:0,36,0:0:0:36,0:1292,0:-99.0162,-10.8371,0,-99.0162,-10.8371,-99.0162	1/1:50:0,50,0:0:0:50,0:1783,0:-139.557,-15.0515,0,-139.557,-15.0515,-139.557	1/2:86:0,59,26:0:0:59,26:2109,921:-220.354,-73.9266,-56.1658,-146.425,0,-138.599	1/2:18:0,9,9:0:0:9,9:324,320:-48.7006,-26.056,-23.3468,-22.9766,0,-20.2674	1/1:210:0,208,0:0:0:208,0:7440,0:-571.261,-62.6142,0,-571.261,-62.6142,-571.261	1/2:117:0,66,51:0:0:66,51:2357,1796:-306.752,-144.398,-124.53,-162.684,0,-147.331	1/1:125:1,123,0:1:36:123,0:4408,0:-339.44,-34.0882,0,-339.741,-37.0267,-342.678	1/1:76:0,76,0:0:0:76,0:2731,0:-211.395,-22.8783,0,-211.395,-22.8783,-211.395	1/2:150:0,85,64:0:0:85,64:3007,2248:-385.113,-180.86,-155.272,-204.282,0,-185.016	1/1:71:0,71,0:0:0:71,0:2556,0:-195.401,-21.3731,0,-195.401,-21.3731,-195.401	1/2:26:0,11,15:0:0:11,15:396,531:-70.3472,-43.0792,-39.7679,-27.5944,0,-23.0789	1/1:69:0,68,1:0:0:68,1:2436,36:-189.905,-20.47,0,-189.22,-19.6723,-188.919	1/2:67:0,45,21:0:0:45,21:1616,742:-169.404,-59.7928,-46.2464,-109.701,0,-103.379	1/1:85:0,85,0:0:0:85,0:3033,0:-234.154,-25.5876,0,-234.154,-25.5876,-234.154	1/1:114:0,114,0:0:0:114,0:4062,0:-312.431,-34.3174,0,-312.431,-34.3174,-312.431	1/1:107:0,106,0:0:0:106,0:3816,0:-295.733,-31.9092,0,-295.733,-31.9092,-295.733	1/2:41:0,19,22:0:0:19,22:684,790:-112.158,-64.0553,-58.3357,-48.4367,0,-41.814	1/1:152:0,150,2:0:0:150,2:5377,72:-413.561,-45.1545,0,-407.756,-38.9952,-407.154	1/2:36:0,24,12:0:0:24,12:864,421:-92.7955,-34.1411,-26.9164,-58.987,0,-55.3746	1/2:87:0,40,47:0:0:40,47:1440,1684:-235.062,-135.695,-123.654,-99.6974,0,-85.549	1/1:99:1,97,0:1:36:97,0:3477,0:-264.492,-26.2316,0,-264.793,-29.1999,-267.731	1/2:63:0,34,29:0:0:34,29:1224,1019:-167.438,-82.3664,-72.1314,-85.4026,0,-76.6728	1/2:104:0,68,35:0:0:68,35:2406,1235:-263.685,-96.5237,-76.0537,-167.195,0,-156.658	1/2:62:0,22,40:0:0:22,40:792,1404:-167.491,-112.787,-106.164,-55.0267,0,-42.9855	1/1:120:0,120,0:0:0:120,0:4307,0:-334.305,-36.1236,0,-334.305,-36.1236,-334.305	1/1:138:0,137,1:0:0:137,1:4928,36:-383.736,-41.2411,0,-381.354,-38.5614,-381.053
chr09	20626226	.	TTGCT	CTGCT	95358.9	PASS	AB=0.581412;ABP=237.781;AC=139;AF=0.739362;AN=188;AO=6145;CIGAR=1X4M;DP=7905;DPB=7913;DPRA=0;EPP=13346.7;EPPR=3642.4;GTI=4;LEN=1;MEANALT=1.5;MQM=32.917;MQMR=45.7297;NS=94;NUMALT=1;ODDS=1.40355;PAIRED=0;PAIREDR=0;PAO=17.5;PQA=586;PQR=0;PRO=5;QA=200087;QR=59682;RO=1676;RPL=6145;RPP=13346.7;RPPR=3642.4;RPR=0;RUN=1;SAF=0;SAP=13346.7;SAR=6145;SRF=0;SRP=3642.4;SRR=1676;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:65:0,64:0:0:64:2090:-171.093,-19.2659,0	1/1:51:0,50:0:0:50:1636:-133.697,-15.0515,0	1/1:102:0,100:0:0:100:3230:-265.076,-30.103,0	1/1:131:1,130:1:36:130:4215:-341.818,-35.8763,0	0/1:85:30,55:30:1078:55:1798:-122.151,0,-70.642	0/1:20:3,17:3:97:17:561:-40.1086,0,-2.93136	0/1:118:53,65:53:1891:65:2139:-141.119,0,-131.797	1/1:110:0,106:0:0:106:3463:-283.611,-31.9092,0	0/1:87:40,47:40:1420:47:1509:-97.5673,0,-99.9728	1/1:78:0,77:0:0:77:2485:-203.834,-23.1793,0	0/1:73:32,41:32:1144:41:1343:-88.1311,0,-80.1264	1/1:156:0,152:0:0:152:4957:-406.716,-45.7566,0	1/1:128:0,127:0:0:127:4149:-339.92,-38.2308,0	0/1:92:30,61:30:1065:61:1970:-134.18,0,-66.9264	0/1:89:36,52:36:1285:52:1692:-112.002,0,-87.9168	0/1:74:24,49:24:854:49:1596:-108.593,0,-53.7692	0/1:48:18,30:18:646:30:986:-66.4644,0,-43.3557	0/1:53:18,35:18:646:35:1153:-78.6358,0,-41.8846	1/1:42:0,41:0:0:41:1349:-110.587,-12.3422,0	0/1:88:36,51:36:1293:51:1659:-109.545,0,-88.372	1/1:94:0,94:0:0:94:3064:-250.806,-28.2968,0	0/1:106:59,47:59:2102:47:1482:-89.5788,0,-154.917	0/1:93:44,49:44:1575:49:1592:-102.781,0,-106.585	1/1:21:0,21:0:0:21:688:-56.5729,-6.32163,0	1/1:125:0,125:0:0:125:4068:-333.712,-37.6288,0	0/1:183:86,96:86:3053:96:3098:-199.953,0,-217.063	0/1:174:96,78:96:3408:78:2541:-155.913,0,-251.191	0/1:57:22,32:22:788:32:1042:-69.1106,0,-53.3744	0/1:150:64,86:64:2291:86:2787:-183.849,0,-158.87	1/1:84:0,84:0:0:84:2735:-223.825,-25.2865,0	0/1:79:26,52:26:933:52:1687:-114.701,0,-59.0259	1/1:14:0,14:0:0:14:454:-37.3629,-4.21442,0	0/1:14:2,12:2:71:12:396:-28.4755,0,-2.45974	0/1:5:1,4:1:35:4:122:-8.66735,0,-1.96166	1/1:17:0,17:0:0:17:561:-46.1858,-5.11751,0	0/1:13:5,8:5:169:8:263:-18.0912,0,-11.4859	0/1:304:103,193:103:3691:193:6242:-421.682,0,-239.235	1/1:138:0,138:0:0:138:4482:-367.109,-41.5421,0	1/1:56:0,55:0:0:55:1765:-143.92,-16.5567,0	1/1:4:0,4:0:0:4:119:-10.1917,-1.20412,0	1/1:135:4,131:4:144:131:4266:-336.144,-27.5173,0	1/1:43:0,42:0:0:42:1371:-112.236,-12.6433,0	0/1:144:50,94:50:1759:94:3068:-207.995,0,-113.607	0/1:57:23,33:23:820:33:1073:-71.1156,0,-55.8174	0/1:105:27,74:27:971:74:2397:-165.738,0,-56.021	0/1:128:62,65:62:2187:65:2100:-133.595,0,-154.663	0/1:124:40,83:40:1412:83:2715:-185.444,0,-88.7539	1/1:103:0,100:0:0:100:3267:-268.131,-30.103,0	1/1:116:1,115:1:36:115:3768:-304.97,-31.3609,0	0/1:98:24,74:24:860:74:2427:-169.356,0,-47.3845	1/1:31:0,31:0:0:31:1002:-82.1584,-9.33193,0	0/1:5:1,4:1:36:4:130:-9.4065,0,-2.05347	1/1:101:0,101:0:0:101:3295:-269.784,-30.404,0	1/1:31:0,31:0:0:31:1007:-82.8009,-9.33193,0	0/1:31:16,15:16:574:15:483:-30.8702,0,-42.0795	1/1:106:0,103:0:0:103:3355:-274.455,-31.0061,0	0/1:63:27,36:27:962:36:1158:-76.3778,0,-66.7689	1/1:13:0,13:0:0:13:427:-35.1521,-3.91339,0	0/1:3:2,1:2:72:1:33:-2.09599,0,-5.85828	0/1:46:14,31:14:499:31:996:-68.1505,0,-30.1468	0/1:163:56,103:56:1995:103:3361:-227.071,0,-128.328	1/1:8:0,8:0:0:8:263:-21.8021,-2.40824,0	0/1:118:54,64:54:1904:64:2102:-136.667,0,-134.229	1/1:166:0,166:0:0:166:5404:-442.823,-49.971,0	0/1:36:24,12:24:862:12:394:-21.7569,0,-64.7916	1/1:78:0,77:0:0:77:2499:-204.769,-23.1793,0	0/1:99:50,49:50:1786:49:1601:-101.316,0,-128.239	1/1:69:0,69:0:0:69:2271:-186.129,-20.7711,0	1/1:34:0,34:0:0:34:1111:-91.0546,-10.235,0	1/1:48:0,48:0:0:48:1568:-128.606,-14.4494,0	0/1:87:27,58:27:968:58:1868:-127.924,0,-60.1191	0/1:17:8,8:8:278:8:267:-17.1903,0,-20.0216	1/1:200:0,199:0:0:199:6484:-530.368,-59.905,0	0/1:118:51,67:51:1805:67:2178:-143.258,0,-125.005	1/1:120:0,118:0:0:118:3845:-315.829,-35.5215,0	1/1:73:0,73:0:0:73:2402:-196.692,-21.9752,0	0/1:147:64,81:64:2268:81:2639:-172.054,0,-158.279	1/1:69:0,67:0:0:67:2173:-177.801,-20.169,0	0/1:26:15,10:15:533:10:328:-19.293,0,-39.881	1/1:69:1,68:1:36:68:2222:-180.969,-19.6723,0	0/1:64:20,42:20:706:42:1359:-92.5471,0,-44.2749	1/1:82:0,82:0:0:82:2658:-217.573,-24.6845,0	1/1:108:0,105:0:0:105:3447:-282.246,-31.6082,0	1/1:105:0,101:0:0:101:3292:-269.336,-30.404,0	0/1:41:22,19:22:791:19:625:-39.3753,0,-58.4255	1/1:150:2,144:2:72:144:4659:-374.768,-37.5284,0	0/1:36:12,24:12:431:24:781:-53.2491,0,-27.7977	0/1:86:46,39:46:1627:39:1271:-78.2348,0,-119.132	1/1:98:0,94:0:0:94:3073:-251.948,-28.2968,0	0/1:65:29,36:29:1041:36:1183:-77.4944,0,-73.4281	0/1:103:35,66:35:1245:66:2158:-146.01,0,-77.5359	0/1:63:40,23:40:1431:23:751:-42.7355,0,-108.183	1/1:119:0,119:0:0:119:3877:-317.341,-35.8226,0	1/1:136:0,136:0:0:136:4467:-366.098,-40.9401,0
chr09	20630808	.	T	C	100652	PASS	AB=0.561411;ABP=236.11;AC=111;AF=0.590426;AN=188;AO=5341;CIGAR=1X;DP=8558;DPB=8558;DPRA=0;EPP=11600.8;EPPR=6984.29;GTI=12;LEN=1;MEANALT=1.02128;MQM=59.557;MQMR=49.6603;NS=94;NUMALT=1;ODDS=0.0210373;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191310;QR=114907;RO=3215;RPL=0;RPP=11600.8;RPPR=6984.29;RPR=5341;RUN=1;SAF=5341;SAP=11600.8;SAR=0;SRF=3215;SRP=6984.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:108:4,104:4:144:104:3712:-320.04,-19.2013,0	0/1:94:9,85:9:324:85:3056:-246.757,0,-0.336444	0/1:150:40,110:40:1432:110:3956:-311.061,0,-57.0233	0/1:21:16,5:16:572:5:176:-9.86339,0,-44.7875	0/1:21:7,14:7:248:14:492:-38.0176,0,-16.3426	0/1:88:45,43:45:1612:43:1540:-112.385,0,-117.477	0/1:139:15,124:15:521:124:4436:-357.255,0,-4.76551	0/1:29:20,9:20:712:9:320:-20.4125,0,-55.6768	1/1:136:15,121:15:536:121:4321:-350.506,-2.66162,0	0/1:106:71,35:71:2544:35:1248:-80.7157,0,-187.392	0/1:113:15,98:15:540:98:3524:-283.344,0,-14.9065	0/1:107:22,85:22:784:85:3056:-243.016,0,-36.9386	0/1:185:112,73:112:4005:73:2611:-179.202,0,-293.374	0/1:99:67,32:67:2400:32:1144:-73.4629,0,-176.054	0/1:100:56,43:56:2012:43:1540:-108.976,0,-141.088	0/1:141:73,68:73:2620:68:2447:-178.009,0,-192.58	0/1:99:64,35:64:2285:35:1256:-83.527,0,-176.103	1/1:69:1,68:1:36:68:2428:-215.151,-17.1738,0	0/1:89:48,41:48:1709:41:1448:-103.823,0,-122.337	0/1:140:28,112:28:1008:112:4020:-319.837,0,-30.3051	0/1:19:13,6:13:453:6:216:-14.0709,0,-30.1588	0/1:48:31,17:31:1108:17:612:-40.9331,0,-84.8796	1/1:88:0,88:0:0:88:3146:-283.145,-26.4906,0	0/1:22:4,18:4:144:18:644:-51.6679,0,-3.81534	0/1:194:88,106:88:3144:106:3800:-283.765,0,-210.722	0/1:125:69,56:69:2465:56:2000:-142.629,0,-173.965	0/1:71:44,27:44:1576:27:968:-66.0642,0,-110.507	0/1:122:76,46:76:2732:46:1656:-112.599,0,-177.207	0/1:133:19,114:19:680:114:4100:-329.11,0,-9.48537	0/1:98:52,46:52:1841:46:1648:-119.103,0,-127.049	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:12:0,12:0:0:12:428:-37.6521,-3.61236,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:298:173,125:173:6196:125:4484:-312.89,0,-426.739	1/1:194:4,190:4:144:190:6824:-603.639,-47.9618,0	1/1:80:7,73:7:252:73:2620:-212.976,-1.06133,0	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:144:18,126:18:644:126:4508:-356.036,0,-4.33546	0/1:48:6,42:6:216:42:1508:-121.562,0,-0.908399	0/1:41:21,20:21:752:20:720:-52.7784,0,-49.4376	0/1:128:68,60:68:2436:60:2152:-154.139,0,-171.544	0/1:120:77,43:77:2772:43:1529:-101.748,0,-202.233	0/1:50:20,30:20:716:30:1072:-81.741,0,-42.3791	0/1:79:50,29:50:1769:29:1040:-70.1296,0,-135.681	0/1:123:25,98:25:900:98:3512:-279.243,0,-27.5288	0/1:68:8,60:8:284:60:2144:-172.123,0,-0.0350361	0/1:149:88,61:88:3152:61:2180:-151.606,0,-222.691	0/1:59:8,51:8:284:51:1824:-146.651,0,-0.289719	0/1:9:3,6:3:108:6:216:-17.0789,0,-7.3659	0/1:62:8,54:8:288:54:1936:-154.453,0,-7.5962	0/1:30:9,21:9:320:21:752:-58.9692,0,-12.186	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:104:16,88:16:576:88:3135:-250.966,0,-11.7097	0/1:15:3,12:3:108:12:424:-33.9786,0,-4.83434	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/1:64:32,32:32:1140:32:1144:-83.9928,0,-80.8357	0/1:222:136,86:136:4854:86:3092:-211.667,0,-349.452	0/1:3:1,2:1:36:2:72:-5.93117,0,-2.69518	0/1:220:182,38:182:6512:38:1368:-57.1875,0,-396.875	1/1:155:17,138:17:604:138:4954:-402.169,-2.84355,0	0/1:81:51,30:51:1817:30:1068:-72.0379,0,-131.13	1/1:60:7,53:7:252:53:1896:-152.832,-0.0068802,0	0/1:114:68,46:68:2433:46:1637:-113.121,0,-179.297	1/1:78:6,72:6:212:72:2580:-216.992,-8.05362,0	1/1:50:5,45:5:176:45:1616:-132.81,-2.16407,0	1/1:30:1,29:1:36:29:1040:-90.3171,-5.43363,0	0/1:177:94,82:94:3368:82:2940:-211.63,0,-227.653	0/1:16:7,9:7:252:9:316:-23.9624,0,-16.0807	0/1:96:17,79:17:589:79:2817:-224.305,0,-23.4688	0/1:66:28,38:28:1008:38:1364:-103.176,0,-71.1601	1/1:94:2,92:2:72:92:3308:-292.703,-23.1006,0	0/1:167:68,99:68:2448:99:3530:-267.635,0,-122.892	0/1:47:22,25:22:777:25:900:-67.1726,0,-56.0624	0/1:178:60,118:60:2133:118:4224:-325.626,0,-136.176	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4381	0/1:93:22,71:22:792:71:2544:-201.2,0,-28.6898	0/1:60:38,22:38:1349:22:784:-52.8083,0,-103.631	1/1:119:10,109:10:360:109:3870:-322.104,-9.44348,0	1/1:154:17,137:17:608:137:4912:-394.955,-3.15839,0	0/1:144:21,123:21:748:123:4412:-353.846,0,-10.6223	0/1:114:75,39:75:2684:39:1392:-91.2616,0,-201.265	0/1:193:31,162:31:1116:162:5812:-465.08,0,-22.2899	0/1:60:29,31:29:1044:31:1112:-82.3295,0,-76.2094	0/1:129:75,54:75:2688:54:1940:-135.364,0,-203.285	0/1:121:19,102:19:680:102:3668:-293.867,0,-24.2247	0/1:108:53,55:53:1893:55:1976:-145.546,0,-135.244	0/1:132:71,61:71:2526:61:2192:-157.805,0,-182.944	0/1:124:95,29:95:3370:29:1044:-56.9248,0,-253.556	0/1:107:65,42:65:2317:42:1481:-101.366,0,-132.997	0/1:146:27,119:27:953:119:4272:-340.124,0,-23.6641
chr09	20635682	.	C	T	1740.49	PASS	AB=0.514341;ABP=8.5534;AC=130;AF=0.698925;AN=186;AO=5084;CIGAR=1X;DP=6730;DPB=6730;DPRA=8.19536;EPP=11034.1;EPPR=3572.91;GTI=60;LEN=1;MEANALT=1.02198;MQM=10.8838;MQMR=11.4842;NS=93;NUMALT=1;ODDS=25.9417;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177644;QR=58240;RO=1644;RPL=1;RPP=11034.1;RPPR=3572.91;RPR=5083;RUN=1;SAF=0;SAP=11042.8;SAR=5084;SRF=0;SRP=3572.91;SRR=1644;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5:0:0:5:172:-4.95934,-1.50515,0	1/1:72:0,72:0:0:72:2522:-70.911,-21.6742,0	1/1:114:0,114:0:0:114:3973:-112.294,-34.3174,0	1/1:156:0,156:0:0:156:5438:-153.794,-46.9607,0	0/1:47:30,17:30:1063:17:589:-2.64487,0,-17.8633	0/0:39:30,9:30:1044:9:302:0,-2.83453,-20.6453	0/1:132:57,75:57:2017:75:2626:-34.3804,0,-21.5382	1/1:123:0,122:0:0:122:4274:-119.597,-36.7257,0	0/0:90:64,26:64:2288:26:897:0,-1.39115,-37.9583	1/1:106:0,106:0:0:106:3707:-104.758,-31.9092,0	0/1:40:24,16:24:847:16:553:-3.85353,0,-13.679	1/1:60:0,60:0:0:60:2095:-62.2942,-18.0618,0	1/1:63:0,63:0:0:63:2223:-62.0258,-18.9649,0	0/1:40:22,18:22:775:18:640:-5.77448,0,-11.7021	0/1:56:30,26:30:1068:26:902:-8.84998,0,-15.1626	0/1:33:20,13:20:708:13:464:-2.84836,0,-11.8402	0/1:50:27,23:27:960:23:811:-7.52081,0,-11.8426	0/1:46:16,30:16:567:30:1063:-15.8271,0,-2.07646	1/1:59:0,59:0:0:59:2034:-57.7777,-17.7608,0	0/1:123:56,67:56:2008:67:2367:-29.1344,0,-23.3076	1/1:146:0,146:0:0:146:5103:-143.944,-43.9504,0	0/1:107:61,46:61:2163:46:1619:-9.32325,0,-28.2016	0/1:50:23,27:23:819:27:956:-11.6607,0,-9.68464	1/1:69:0,69:0:0:69:2413:-67.6816,-20.7711,0	1/1:63:0,63:0:0:63:2211:-62.111,-18.9649,0	0/1:201:88,113:88:3128:113:3948:-41.7333,0,-28.6048	0/1:123:53,70:53:1875:70:2463:-32.006,0,-19.6946	0/1:38:24,14:24:851:14:487:-2.50352,0,-14.3734	0/1:157:73,84:73:2600:84:2915:-29.8765,0,-24.6644	1/1:106:0,106:0:0:106:3746:-104.083,-31.9092,0	0/1:73:34,39:34:1180:39:1336:-16.4607,0,-14.3046	1/1:23:0,23:0:0:23:815:-22.754,-6.92369,0	0/1:5:3,2:3:108:2:57:-0.547318,0,-1.85032	0/1:7:4,3:4:136:3:104:-0.96748,0,-2.04628	1/1:2:0,2:0:0:2:72:-2.0876,-0.60206,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-5.05419	0/1:209:115,94:115:4049:94:3283:-24.6776,0,-50.292	1/1:106:0,106:0:0:106:3705:-104.023,-31.9092,0	1/1:68:0,68:0:0:68:2369:-70.0718,-20.47,0	.:.:.:.:.:.:.:.	1/1:130:2,128:2:72:128:4500:-123.877,-36.7624,0	1/1:41:0,41:0:0:41:1442:-40.5407,-12.3422,0	0/1:72:26,46:26:921:46:1615:-23.722,0,-6.08528	0/1:76:35,41:35:1256:41:1440:-17.6696,0,-14.8085	0/1:70:35,35:35:1231:35:1206:-15.4029,0,-17.1231	0/1:123:67,56:67:2365:56:1952:-13.5577,0,-29.2899	0/1:84:41,43:41:1451:43:1502:-17.1373,0,-15.3521	1/1:91:2,89:2:72:89:3131:-85.6273,-25.1168,0	1/1:105:0,105:0:0:105:3700:-103.426,-31.6082,0	0/1:80:34,46:34:1220:46:1611:-22.7759,0,-13.7669	1/1:134:0,134:0:0:134:4641:-121.294,-40.338,0	0/1:4:2,2:2:72:2:72:-0.788749,0,-1.07281	1/1:83:0,83:0:0:83:2877:-81.6261,-24.9855,0	1/1:18:0,18:0:0:18:622:-16.3594,-5.41854,0	0/0:13:13,0:13:468:0:0:0,-3.91339,-12.9651	1/1:45:1,44:1:36:44:1538:-42.1243,-12.348,0	0/1:40:19,21:19:680:21:744:-8.82965,0,-8.47858	1/1:8:2,6:2:72:6:208:-3.30963,-0.225975,0	0/0:10:7,3:7:252:3:104:0,-0.214426,-4.23605	0/1:22:10,12:10:356:12:412:-5.34494,0,-4.18974	0/1:90:42,48:42:1488:48:1700:-20.2911,0,-17.8637	0/0:5:4,1:4:144:1:36:0,-0.406412,-3.33528	0/1:116:56,60:56:1992:60:2090:-19.3677,0,-20.5564	1/1:152:1,151:1:36:151:5239:-147.43,-44.5582,0	0/1:46:20,26:20:712:26:928:-11.9695,0,-7.38805	1/1:39:0,39:0:0:39:1371:-38.3878,-11.7402,0	0/1:126:52,74:52:1852:74:2578:-36.1867,0,-17.9039	1/1:75:0,75:0:0:75:2643:-73.9766,-22.5773,0	1/1:8:0,8:0:0:8:280:-9.18056,-2.40824,0	1/1:77:0,77:0:0:77:2660:-75.9783,-23.1793,0	0/1:66:32,34:32:1130:34:1186:-10.9627,0,-13.9005	0/1:6:2,4:2:72:4:144:-2.25915,0,-0.470748	1/1:168:0,168:0:0:168:5840:-165.581,-50.573,0	0/1:44:19,25:19:656:25:880:-11.3075,0,-5.60992	1/1:127:0,127:0:0:127:4360:-124.632,-38.2308,0	1/1:58:0,58:0:0:58:2035:-57.3474,-17.4597,0	0/1:88:46,42:46:1632:42:1479:-15.0434,0,-19.1869	1/1:80:2,78:2:72:78:2732:-74.8515,-21.9948,0	0/1:8:5,3:5:176:3:104:-0.66645,0,-2.6442	1/1:79:1,78:1:36:78:2741:-75.6445,-22.583,0	0/1:52:27,25:27:972:25:884:-8.9006,0,-11.1556	1/1:140:0,139:0:0:139:4875:-136.707,-41.8432,0	1/1:80:0,80:0:0:80:2784:-78.6968,-24.0824,0	1/1:50:0,50:0:0:50:1714:-49.1616,-15.0515,0	0/1:76:33,43:33:1167:43:1495:-19.6361,0,-12.547	1/1:125:2,123:2:63:123:4276:-118.75,-35.3623,0	0/1:49:28,21:28:982:21:744:-5.84972,0,-13.1185	0/1:71:37,34:37:1315:34:1200:-12.1677,0,-15.4051	1/1:77:0,77:0:0:77:2684:-75.7344,-23.1793,0	0/1:31:14,17:14:478:17:604:-7.49485,0,-5.86305	0/1:61:22,39:22:754:39:1379:-20.298,0,-5.27588	0/1:65:43,22:43:1517:22:771:-2.19511,0,-26.8083	1/1:51:1,50:1:36:50:1748:-48.122,-14.1541,0	1/1:83:0,83:0:0:83:2889:-82.1065,-24.9855,0
chr09	20637609	.	GG	AC,GC	60840.8	PASS	AB=0.413321,0.583878;ABP=212.689,199.356;AC=136,52;AF=0.723404,0.276596;AN=188;AO=3929,1908;CIGAR=2X,1M1X;DP=5853;DPB=5854;DPRA=6.2828,1.48399;EPP=8534.73,4146.18;EPPR=0;GTI=9;LEN=2,1;MEANALT=1.84946,2.17188;MQM=23.8682,25.0943;MQMR=0;NS=94;NUMALT=2;ODDS=0.0500446;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=72,0;PQR=0;PRO=0;QA=134934,67596;QR=0;RO=0;RPL=3929,1908;RPP=8534.73,4146.18;RPPR=0;RPR=0,0;RUN=1,1;SAF=3929,1908;SAP=8534.73,4146.18;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55,0:0:0:55,0:1903,0:-115.876,-16.5567,0,-115.876,-16.5567,-115.876	1/1:40:0,40,0:0:0:40,0:1397,0:-83.9265,-12.0412,0,-83.9265,-12.0412,-83.9265	1/1:157:0,154,1:0:0:154,1:5277,36:-324.383,-46.3586,0,-323.606,-45.6319,-323.305	1/1:61:0,61,0:0:0:61,0:2137,0:-129.731,-18.3628,0,-129.731,-18.3628,-129.731	1/2:26:0,9,17:0:0:9,17:309,608:-50.2497,-32.9854,-30.2762,-17.5112,0,-12.3937	1/2:49:0,18,31:0:0:18,31:622,1096:-94.707,-61.8925,-56.474,-33.0572,0,-23.7253	1/2:47:0,18,29:0:0:18,29:620,1021:-87.5088,-55.3584,-49.9399,-32.3871,0,-23.6573	1/1:92:0,91,1:0:0:91,1:3086,36:-192.823,-27.3937,0,-190.821,-25.1361,-190.52	1/2:89:0,33,55:0:0:33,55:1125,1955:-167.976,-109.322,-99.3878,-58.6562,0,-42.0996	1/1:21:0,21,0:0:0:21,0:725,0:-44.1739,-6.32163,0,-44.1739,-6.32163,-44.1739	1/2:60:0,29,31:0:0:29,31:1012,1088:-110.786,-58.0263,-49.2964,-52.9972,0,-43.6653	1/1:76:0,76,0:0:0:76,0:2578,0:-158.834,-22.8783,0,-158.834,-22.8783,-158.834	1/1:51:0,51,0:0:0:51,0:1749,0:-105.208,-15.3525,0,-105.208,-15.3525,-105.208	1/2:50:0,21,29:0:0:21,29:707,1005:-93.9224,-55.433,-49.1114,-38.7298,0,-29.9999	1/2:46:0,22,24:0:0:22,24:784,856:-86.6151,-46.7312,-40.1086,-40.1254,0,-32.9007	1/2:60:0,27,33:0:0:27,33:936,1172:-111.588,-63.0664,-54.9386,-48.7602,0,-38.8262	1/2:24:0,7,17:0:0:7,17:248,608:-46.6928,-34.138,-32.0308,-12.794,0,-7.67652	1/2:20:0,12,8:0:0:12,8:404,284:-37.8279,-16.2194,-12.607,-21.8551,0,-19.4468	1/1:21:0,21,0:0:0:21,0:726,0:-43.5181,-6.32163,0,-43.5181,-6.32163,-43.5181	1/2:67:0,32,34:0:0:32,34:1085,1192:-116.927,-63.2728,-53.6399,-53.7246,0,-43.4896	1/1:67:0,66,0:0:0:66,0:2175,0:-135.089,-19.868,0,-135.089,-19.868,-135.089	1/2:61:0,10,50:0:0:10,50:334,1766:-113.207,-95.2919,-92.2816,-17.9125,0,-2.86101	1/2:83:0,35,47:0:0:35,47:1201,1684:-151.23,-89.9863,-79.4502,-61.2753,0,-47.1269	1/1:25:0,25,0:0:0:25,0:841,0:-50.5655,-7.52575,0,-50.5655,-7.52575,-50.5655	1/1:35:0,35,0:0:0:35,0:1208,0:-73.217,-10.5361,0,-73.217,-10.5361,-73.217	1/2:202:0,85,117:0:0:85,117:2925,4180:-374.325,-224.21,-198.623,-150.351,0,-115.13	1/2:153:0,61,91:0:0:61,91:2089,3229:-282.349,-174.002,-155.639,-108.369,0,-80.9748	1/2:16:0,8,8:0:0:8,8:284,288:-30.243,-15.6002,-13.1919,-14.8846,0,-12.4764	1/2:158:0,96,61:0:0:96,61:3291,2163:-285.901,-115.033,-86.1339,-170.892,0,-152.529	1/1:85:0,84,0:0:0:84,0:2855,0:-175.038,-25.2865,0,-175.038,-25.2865,-175.038	1/2:137:0,51,85:0:0:51,85:1750,3014:-250.77,-160.368,-145.016,-90.4406,0,-64.853	1/1:12:0,12,0:0:0:12,0:408,0:-25.3351,-3.61236,0,-25.3351,-3.61236,-25.3351	1/2:22:0,4,18:0:0:4,18:142,636:-40.4275,-33.1001,-31.8959,-7.56428,0,-2.14574	1/2:11:0,3,8:0:0:3,8:108,288:-21.434,-15.9324,-15.0293,-5.74279,0,-3.33455	1/1:9:0,9,0:0:0:9,0:301,0:-19.2902,-2.70927,0,-19.2902,-2.70927,-19.2902	1/2:32:0,5,27:0:0:5,27:176,972:-62.1362,-52.9892,-51.484,-9.38592,0,-1.25811	1/2:155:0,66,89:0:0:66,89:2298,3169:-289.787,-172,-152.132,-118.026,0,-91.2344	1/1:90:0,90,0:0:0:90,0:3063,0:-186.833,-27.0927,0,-186.833,-27.0927,-186.833	1/1:32:0,32,0:0:0:32,0:1121,0:-68.9171,-9.63296,0,-68.9171,-9.63296,-68.9171	1/1:3:0,3,0:0:0:3,0:108,0:-6.64588,-0.90309,0,-6.64588,-0.90309,-6.64588	1/1:91:0,89,2:0:0:89,2:3070,72:-188.24,-26.7917,0,-184.401,-22.7066,-183.799	1/1:29:0,29,0:0:0:29,0:1016,0:-61.5356,-8.72987,0,-61.5356,-8.72987,-61.5356	1/2:144:0,47,96:0:0:47,96:1585,3403:-263.55,-181.586,-167.438,-81.993,0,-53.0942	1/2:27:0,13,14:0:0:13,14:455,489:-50.8793,-26.6513,-22.7379,-24.4698,0,-20.2553	1/2:37:0,21,15:0:0:21,15:736,508:-65.3904,-28.0405,-21.7189,-37.2567,0,-32.7412	1/2:77:0,29,48:0:0:29,48:1011,1711:-142.899,-91.9373,-83.2074,-51.1967,0,-36.7473	1/2:70:0,27,43:0:0:27,43:932,1514:-130.564,-83.2944,-75.1666,-47.5057,0,-34.5615	1/1:137:0,136,1:0:0:136,1:4658,36:-284.072,-40.9401,0,-282.153,-38.7742,-281.852	1/1:49:0,49,0:0:0:49,0:1679,0:-103.369,-14.7505,0,-103.369,-14.7505,-103.369	1/2:109:0,48,61:0:0:48,61:1650,2149:-197.593,-113.101,-98.6511,-84.7258,0,-66.363	1/1:37:0,37,0:0:0:37,0:1306,0:-78.2862,-11.1381,0,-78.2862,-11.1381,-78.2862	1/2:6:0,2,4:0:0:2,4:72,144:-11.5906,-7.92343,-7.32137,-3.90765,0,-2.70353	1/1:65:0,63,1:0:0:63,1:2229,36:-131.756,-18.9649,0,-129.753,-16.9475,-129.452	1/1:21:0,21,0:0:0:21,0:712,0:-44.2719,-6.32163,0,-44.2719,-6.32163,-44.2719	2/2:10:0,0,10:0:0:0,10:0,352:-24.0543,-24.0543,-24.0543,-3.0103,-3.0103,0	1/1:95:0,94,1:0:0:94,1:3250,36:-196.776,-28.2968,0,-194.856,-26.1309,-194.555	1/2:63:0,22,41:0:0:22,41:734,1459:-117.939,-78.9363,-72.3136,-39.2386,0,-26.8964	1/2:11:0,2,9:0:0:2,9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chr09	20653010	.	CGT	TGC,CGC	517410	PASS	AB=0.460889,0.533544;ABP=141.445,104.842;AC=137,51;AF=0.728723,0.271277;AN=188;AO=13942,5605;CIGAR=1X1M1X,2M1X;DP=19642;DPB=19669.7;DPRA=0,1.28896;EPP=30234.3,12139.4;EPPR=18.2106;GTI=0;LEN=3,1;MEANALT=2.56383,2.88732;MQM=59.9311,59.9732;MQMR=60;NS=94;NUMALT=2;ODDS=0.958639;PAIRED=0,0;PAIREDR=0;PAO=83,0;PQA=2923,0;PQR=0;PRO=0;QA=481197,197492;QR=231;RO=7;RPL=6072,2995;RPP=506.521,60.4352;RPPR=5.80219;RPR=7870,2610;RUN=1,1;SAF=6067,2997;SAP=512.137,61.6346;SAR=7875,2608;SRF=2;SRP=5.80219;SRR=5;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:91:0,91,0:0:0:91,0:3149,0:-283.593,-27.3937,0,-283.593,-27.3937,-283.593	1/1:183:0,182,0:0:0:182,0:6327,0:-569.309,-54.7875,0,-569.309,-54.7875,-569.309	1/1:134:0,133,0:0:0:133,0:4551,0:-409.43,-40.037,0,-409.43,-40.037,-409.43	1/1:386:0,381,3:0:0:381,3:13159,108:-1183.82,-114.692,0,-1175.01,-105.864,-1174.11	1/2:127:0,33,94:0:0:33,94:1127,3360:-365.384,-273.96,-264.026,-91.4103,0,-63.1135	1/2:113:0,30,83:0:0:30,83:1040,2953:-324.639,-240.666,-231.636,-83.9706,0,-58.9851	1/2:246:0,113,130:0:0:113,130:3950,4583:-694.347,-373.173,-339.156,-321.194,0,-282.061	1/1:183:0,178,3:0:0:178,3:6164,108:-554.428,-53.5833,0,-545.615,-44.769,-544.712	1/2:150:0,46,104:0:0:46,104:1559,3676:-425.821,-299.417,-285.57,-126.426,0,-95.119	1/1:317:0,316,0:0:0:316,0:10926,0:-982.904,-95.1255,0,-982.904,-95.1255,-982.904	1/2:244:0,128,115:0:0:128,115:4410,4022:-685.457,-327.256,-288.724,-358.249,0,-323.631	1/1:73:0,73,0:0:0:73,0:2499,0:-225.165,-21.9752,0,-225.165,-21.9752,-225.165	1/1:53:0,53,0:0:0:53,0:1794,0:-161.417,-15.9546,0,-161.417,-15.9546,-161.417	1/2:231:0,116,113:0:0:116,113:3961,3943:-642.196,-320.766,-285.847,-321.493,0,-287.477	1/2:174:0,86,88:0:0:86,88:2905,3100:-488.194,-252.738,-226.849,-235.802,0,-209.311	1/2:136:0,69,66:0:0:69,66:2402,2294:-381.899,-186.579,-165.808,-195.396,0,-175.528	1/2:126:0,25,101:0:0:25,101:848,3612:-363.304,-294.542,-287.016,-68.7649,0,-38.3609	1/2:99:0,29,69:0:0:29,69:1000,2406:-276.961,-195.728,-186.998,-81.2805,0,-60.5094	1/1:34:0,32,0:0:0:32,0:1098,0:-98.7831,-9.63296,0,-98.7831,-9.63296,-98.7831	1/2:400:0,212,180:0:0:212,180:7381,6362:-1118.32,-518.147,-454.328,-600.184,0,-545.998	1/1:320:0,316,4:0:0:316,4:10911,135:-981.026,-95.1255,0,-970.085,-83.8471,-968.881	1/2:175:0,55,119:0:0:55,119:1919,4181:-496.368,-340.291,-323.734,-156.067,0,-120.245	1/2:203:0,106,97:0:0:106,97:3646,3450:-577.602,-281.511,-249.601,-296.441,0,-267.241	1/1:367:0,366,0:0:0:366,0:12540,0:-1128.06,-110.177,0,-1128.06,-110.177,-1128.06	1/1:155:0,154,1:0:0:154,1:5306,36:-477.33,-46.3586,0,-474.393,-43.0614,-474.092	1/2:569:0,263,302:0:0:263,302:9064,10701:-1607.99,-871.759,-792.588,-736.25,0,-645.339	1/2:519:0,293,225:0:0:293,225:10158,7901:-1468.66,-643.029,-554.827,-825.616,0,-757.884	1/2:104:0,50,54:0:0:50,54:1744,1912:-297.939,-156.099,-141.048,-142.191,0,-125.935	1/2:667:0,314,346:0:0:314,346:10918,12222:-1883.03,-995.347,-900.824,-887.698,0,-783.541	1/1:230:0,227,2:0:0:227,2:7852,72:-706.41,-68.3338,0,-700.535,-62.424,-699.933	1/2:272:0,127,144:0:0:127,144:4426,5040:-770.06,-410.12,-371.889,-360.008,0,-316.66	1/1:28:0,28,0:0:0:28,0:982,0:-88.6917,-8.42884,0,-88.6917,-8.42884,-88.6917	1/2:28:0,10,18:0:0:10,18:343,639:-80.2633,-52.4197,-49.4094,-28.1907,0,-22.7721	1/2:12:0,5,7:0:0:5,7:177,252:-35.3371,-20.9217,-19.4166,-14.7717,0,-12.6645	1/1:6:0,6,0:0:0:6,0:211,0:-19.3335,-1.80618,0,-19.3335,-1.80618,-19.3335	1/2:24:0,8,16:0:0:8,16:265,563:-67.6094,-46.1827,-43.7744,-21.7647,0,-16.9482	1/2:509:0,259,246:0:0:259,246:8942,8654:-1430.81,-704.514,-626.547,-726.341,0,-652.287	1/1:286:0,285,1:0:0:285,1:9966,36:-896.53,-85.7936,0,-893.592,-82.4963,-893.291	1/1:77:0,77,0:0:0:77,0:2619,0:-235.618,-23.1793,0,-235.618,-23.1793,-235.618	1/1:7:0,7,0:0:0:7,0:244,0:-22.2989,-2.10721,0,-22.2989,-2.10721,-22.2989	1/1:354:0,347,6:0:0:347,6:12020,212:-1081.31,-104.457,0,-1064.05,-87.1977,-1062.24	1/1:122:0,122,0:0:0:122,0:4301,0:-386.91,-36.7257,0,-386.91,-36.7257,-386.91	1/2:344:0,163,181:0:0:163,181:5629,6319:-971.379,-514.051,-464.984,-457.404,0,-402.917	1/2:249:0,131,115:0:0:131,115:4518,4044:-696.27,-329.253,-289.818,-367.084,0,-332.466	1/2:194:0,106,86:0:0:106,86:3643,3050:-544.397,-248.575,-216.665,-295.905,0,-270.016	1/2:379:0,192,187:0:0:192,187:6548,6627:-1071.13,-539.858,-482.06,-531.263,0,-474.97	1/2:222:0,67,154:0:0:67,154:2316,5460:-633.006,-444.833,-424.664,-188.181,0,-141.822	1/1:294:0,291,0:0:0:291,0:10066,0:-905.598,-87.5997,0,-905.598,-87.5997,-905.598	1/1:263:0,262,0:0:0:262,0:9105,0:-819.083,-78.8699,0,-819.083,-78.8699,-819.083	1/2:315:0,150,163:0:0:150,163:5153,5770:-888.495,-470.076,-424.921,-418.491,0,-369.423	1/1:403:0,400,1:0:0:400,1:13833,36:-1244.44,-120.412,0,-1241.5,-117.455,-1241.2	1/2:22:0,6,16:0:0:6,16:210,550:-62.0948,-45.0069,-43.2007,-17.4361,0,-12.6196	1/1:125:0,121,2:0:0:121,2:4173,68:-375.416,-36.4246,0,-369.901,-30.9097,-369.299	1/1:80:0,79,1:0:0:79,1:2755,36:-247.827,-23.7814,0,-244.889,-20.4841,-244.588	1/2:34:0,11,23:0:0:11,23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chr09	20655211	.	G	A	25766.9	PASS	AB=0.54329;ABP=48.1318;AC=53;AF=0.284946;AN=186;AO=1520;CIGAR=1X;DP=5372;DPB=5372;DPRA=1.07576;EPP=3303.65;EPPR=8365.35;GTI=1;LEN=1;MEANALT=1.01786;MQM=59.9908;MQMR=59.9675;NS=93;NUMALT=1;ODDS=0.399939;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54094;QR=134832;RO=3851;RPL=0;RPP=3303.65;RPPR=8339.31;RPR=1520;RUN=1;SAF=0;SAP=3303.65;SAR=1520;SRF=3;SRP=8339.31;SRR=3848;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:47:47,0:47:1646:0:0:0,-14.1484,-148.425	0/0:70:70,0:70:2460:0:0:0,-21.0721,-221.654	0/0:173:173,0:173:6097:0:0:0,-52.0782,-548.837	0/1:11:1,10:1:36:10:345:-28.0695,0,-0.286945	0/1:24:7,17:7:244:17:608:-47.8273,0,-15.0747	0/1:58:25,33:25:860:33:1155:-86.7931,0,-60.2235	0/0:52:52,0:52:1831:0:0:0,-15.6536,-165.067	0/1:48:14,34:14:481:34:1211:-94.8469,0,-29.1656	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.786	0/1:49:23,26:23:816:26:936:-69.809,0,-59.0112	0/0:95:94,1:94:3210:1:36:0,-24.9996,-285.528	0/0:63:63,0:63:2176:0:0:0,-18.9649,-196.103	0/1:71:38,33:38:1323:33:1171:-84.3235,0,-97.9956	0/1:76:36,40:36:1280:40:1421:-105.307,0,-92.625	0/1:60:32,28:32:1117:28:985:-70.8997,0,-82.7734	0/1:28:19,9:19:663:9:324:-21.077,0,-51.5646	0/1:43:22,21:22:759:21:740:-53.9791,0,-55.6834	0/0:29:29,0:29:1019:0:0:0,-8.72987,-92.0213	0/1:61:30,31:30:1054:31:1112:-82.0285,0,-76.8064	0/0:80:80,0:80:2783:0:0:0,-24.0824,-250.707	0/1:30:8,22:8:279:22:760:-59.685,0,-16.4166	0/1:43:19,24:19:676:24:856:-64.4168,0,-48.2237	0/0:39:39,0:39:1355:0:0:0,-11.7402,-122.245	0/0:39:39,0:39:1319:0:0:0,-11.7402,-119.001	0/1:133:58,75:58:2063:75:2683:-201.677,0,-145.904	0/1:105:43,62:43:1484:62:2214:-167.915,0,-102.24	0/1:27:17,10:17:591:10:360:-24.6165,0,-45.3875	0/1:162:71,91:71:2492:91:3255:-244.404,0,-175.763	0/0:62:62,0:62:2174:0:0:0,-18.6639,-195.924	0/1:72:38,34:38:1329:34:1220:-88.4326,0,-98.2333	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:173:67,106:67:2339:106:3764:-286.88,0,-158.69	0/0:40:40,0:40:1410:0:0:0,-12.0412,-127.173	0/0:70:70,0:70:2428:0:0:0,-21.0721,-218.774	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:58:57,1:57:1990:1:36:0,-13.8615,-175.773	0/0:18:18,0:18:607:0:0:0,-5.41854,-54.9452	0/1:43:18,25:18:633:25:891:-67.5645,0,-44.3508	0/1:67:31,36:31:1091:36:1276:-94.9741,0,-78.3297	0/1:58:24,34:24:840:34:1207:-91.4755,0,-58.4585	0/1:74:35,39:35:1231:39:1395:-103.572,0,-88.817	0/1:30:17,13:17:588:13:460:-32.7045,0,-44.2113	0/0:83:81,1:81:2844:1:36:0,-21.446,-252.598	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.371	0/1:75:50,25:50:1696:25:900:-58.7438,0,-130.343	0/0:65:65,0:65:2288:0:0:0,-19.5669,-206.18	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:67:67,0:67:2312:0:0:0,-20.169,-208.336	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:77:77,0:77:2726:0:0:0,-23.1793,-245.584	0/1:13:6,7:6:207:7:243:-18.2941,0,-15.0535	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:73:39,34:39:1388:34:1214:-87.591,0,-103.244	0/1:139:63,76:63:2205:76:2702:-201.581,0,-156.871	.:.:.:.:.:.:.:.	0/1:176:97,79:97:3442:79:2831:-202.047,0,-257.012	0/0:98:97,1:97:3408:1:36:0,-25.9027,-303.336	0/1:30:12,18:12:428:18:644:-49.2597,0,-29.8279	0/0:25:25,0:25:878:0:0:0,-7.52575,-79.3359	0/1:100:44,56:44:1553:56:2012:-151.25,0,-109.956	0/0:86:85,1:85:3000:1:36:0,-22.2903,-266.634	0/0:53:53,0:53:1853:0:0:0,-15.9546,-167.045	0/0:32:32,0:32:1129:0:0:0,-9.63296,-101.916	0/1:58:37,21:37:1261:21:752:-50.5465,0,-96.3226	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:86:86,0:86:3045:0:0:0,-25.8886,-274.28	0/1:49:16,33:16:576:33:1156:-89.5849,0,-37.4245	0/0:78:78,0:78:2721:0:0:0,-23.4803,-245.133	0/0:79:79,0:79:2784:0:0:0,-23.7814,-250.801	0/1:35:21,14:21:748:14:504:-35.162,0,-57.1092	0/0:62:62,0:62:2194:0:0:0,-18.6639,-197.725	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:56:22,34:22:783:34:1216:-92.8889,0,-53.9353	0/0:76:76,0:76:2646:0:0:0,-22.8783,-238.326	0/0:57:57,0:57:1985:0:0:0,-17.1587,-178.917	0/0:53:53,0:53:1855:0:0:0,-15.9546,-167.229	0/1:46:20,26:20:708:26:928:-69.9909,0,-50.1982	0/0:129:127,2:127:4422:2:72:0,-31.9961,-391.32	0/1:21:6,15:6:208:15:536:-42.2532,0,-12.7375	0/1:70:27,43:27:934:43:1490:-113.317,0,-63.2281	0/0:72:72,0:72:2474:0:0:0,-21.6742,-222.912	0/1:58:26,32:26:915:32:1130:-84.5472,0,-65.2058	0/1:109:49,60:49:1711:60:2137:-159.785,0,-121.333	0/1:68:13,55:13:459:55:1955:-155.755,0,-21.174	0/0:139:139,0:139:4867:0:0:0,-41.8432,-438.185	0/0:85:85,0:85:2948:0:0:0,-25.5875,-265.558
chr09	20655247	.	T	A	80264.7	PASS	AB=0.455824;ABP=50.0145;AC=133;AF=0.715054;AN=186;AO=3864;CIGAR=1X;DP=5392;DPB=5392;DPRA=25.6429;EPP=8393.58;EPPR=3297.14;GTI=1;LEN=1;MEANALT=1.05556;MQM=59.9552;MQMR=59.9954;NS=93;NUMALT=1;ODDS=0.478127;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=138086;QR=54011;RO=1521;RPL=3864;RPP=8393.58;RPPR=3297.14;RPR=0;RUN=1;SAF=0;SAP=8393.58;SAR=3864;SRF=0;SRP=3305.82;SRR=1521;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:49:0,49:0:0:49:1733:-156.252,-14.7505,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:174:0,174:0:0:174:6233:-561.064,-52.3792,0	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:22:16,6:16:561:6:216:-13.1679,0,-44.1945	0/1:58:33,25:33:1154:25:888:-62.7677,0,-86.7025	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0	0/1:45:31,14:31:1112:14:485:-30.4306,0,-86.845	1/1:36:0,36:0:0:36:1292:-116.579,-10.8371,0	0/1:47:25,22:25:884:22:792:-57.4573,0,-65.73	1/1:97:0,96:0:0:96:3436:-309.094,-28.8989,0	1/1:63:0,62:0:0:62:2215:-199.251,-18.6639,0	0/1:74:36,38:36:1292:38:1359:-100.334,0,-94.3075	0/1:75:40,35:40:1416:35:1260:-91.1282,0,-105.16	0/1:60:28,32:28:1000:32:1135:-84.3963,0,-72.2536	0/1:27:8,19:8:280:19:680:-53.4014,0,-17.4115	0/1:43:22,21:22:776:21:747:-54.61,0,-57.2179	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:61:31,30:31:1093:30:1076:-78.79,0,-80.3148	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:30:22,8:22:750:8:288:-17.2365,0,-58.7815	0/1:43:24,19:24:841:19:680:-48.5849,0,-63.0621	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	0/1:133:75,58:75:2681:58:2088:-148.153,0,-201.496	0/1:107:64,43:64:2254:43:1540:-106.683,0,-170.91	0/1:27:11,16:11:396:16:572:-43.6856,0,-27.8549	0/1:164:90,72:90:3193:72:2575:-182.892,0,-238.487	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:73:35,38:35:1218:38:1355:-100.275,0,-87.9441	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:176:111,65:111:3972:65:2331:-157.068,0,-304.689	1/1:40:0,40:0:0:40:1399:-126.202,-12.0412,0	1/1:73:0,73:0:0:73:2599:-234.159,-21.9752,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:58:1,57:1:36:57:2021:-178.564,-13.8615,0	1/1:17:0,17:0:0:17:601:-54.4184,-5.11751,0	0/1:42:25,17:25:888:17:612:-42.7702,0,-67.5958	0/1:66:34,32:34:1201:32:1152:-84.1222,0,-88.5257	0/1:55:31,24:31:1112:24:860:-61.1652,0,-83.8347	0/1:71:38,33:38:1321:33:1177:-84.8643,0,-97.8143	0/1:32:14,18:14:504:18:629:-47.2826,0,-36.0651	1/1:84:1,83:1:36:83:2953:-262.406,-21.6882,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:75:26,49:26:928:49:1737:-134.035,0,-61.261	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:66:0,66:0:0:66:2363:-212.928,-19.868,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	0/1:15:9,6:9:316:6:212:-14.9093,0,-24.2634	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:75:35,40:35:1232:40:1428:-106.24,0,-88.6068	0/1:137:74,63:74:2656:63:2256:-162.062,0,-198.045	.:.:.:.:.:.:.:.	0/1:179:79,100:79:2809:100:3580:-268.522,0,-199.165	1/1:97:1,96:1:36:96:3425:-304.865,-25.6016,0	0/1:29:18,11:18:640:11:396:-27.2529,0,-49.1994	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:99:55,44:55:1952:44:1572:-111.952,0,-146.154	1/1:86:1,85:1:36:85:3044:-270.591,-22.2903,0	1/1:53:0,53:0:0:53:1878:-169.297,-15.9546,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:57:22,35:22:792:35:1252:-95.8264,0,-54.447	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	1/1:87:0,86:0:0:86:3080:-277.068,-25.8886,0	0/1:48:30,18:30:1064:18:644:-43.8412,0,-81.6176	1/1:80:0,80:0:0:80:2861:-257.68,-24.0824,0	1/1:81:0,81:0:0:81:2872:-258.716,-24.3834,0	0/1:36:13,23:13:468:23:800:-61.4779,0,-31.6226	1/1:65:0,65:0:0:65:2312:-208.341,-19.567,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:55:33,22:33:1145:22:788:-54.6881,0,-86.797	1/1:76:0,76:0:0:76:2695:-242.782,-22.8783,0	1/1:57:1,54:1:32:54:1927:-170.444,-13.6906,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:48:28,20:28:989:20:716:-50.3183,0,-74.8726	1/1:130:2,128:2:72:128:4598:-407.146,-32.2972,0	0/1:21:15,6:15:536:6:216:-13.4689,0,-42.2532	0/1:67:41,26:41:1460:26:936:-64.0193,0,-111.527	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	0/1:58:33,25:33:1184:25:900:-63.8613,0,-89.4086	0/1:112:61,51:61:2188:51:1810:-129.465,0,-163.47	0/1:69:55,14:55:1976:14:504:-24.927,0,-157.344	1/1:140:0,140:0:0:140:5007:-450.777,-42.1442,0	1/1:84:0,84:0:0:84:3003:-270.501,-25.2865,0
chr09	20663185	.	TG	CA,CG	161134	PASS	AB=0.51095,0.48836;ABP=9.04991,9.83477;AC=137,49;AF=0.736559,0.263441;AN=186;AO=8942,2857;CIGAR=2X,1X1M;DP=11806;DPB=11806;DPRA=0,1.02191;EPP=19420.3,6206.91;EPPR=0;GTI=3;LEN=2,1;MEANALT=1.70968,2.0678;MQM=28.2,28.9842;MQMR=0;NS=93;NUMALT=2;ODDS=1.27262;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=316587,82694;QR=0;RO=0;RPL=0,0;RPP=19420.3,6206.91;RPPR=0;RPR=8942,2857;RUN=1,1;SAF=8942,2857;SAP=19420.3,6206.91;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31,0:0:0:31,0:1082,0:-68.1577,-9.33193,0,-68.1577,-9.33193,-68.1577	1/1:199:0,199,0:0:0:199,0:7041,0:-438.153,-59.905,0,-438.153,-59.905,-438.153	1/1:138:0,138,0:0:0:138,0:4869,0:-304.58,-41.5421,0,-304.58,-41.5421,-304.58	1/1:227:0,227,0:0:0:227,0:8014,0:-585.468,-68.3338,0,-585.468,-68.3338,-585.468	1/2:111:0,57,54:0:0:57,54:2022,1458:-218.399,-100.595,-83.4366,-118.055,0,-101.799	1/2:22:0,18,4:0:0:18,4:627,98:-40.4704,-6.74998,-1.33144,-33.9402,0,-32.736	1/2:156:0,85,71:0:0:85,71:3022,2112:-343.965,-149.755,-124.167,-194.487,0,-173.114	1/1:242:0,241,0:0:0:241,0:8537,0:-531.641,-72.5482,0,-531.641,-72.5482,-531.641	1/2:87:0,37,50:0:0:37,50:1309,1248:-154.089,-83.973,-72.8349,-70.3499,0,-55.2984	1/1:131:0,131,0:0:0:131,0:4654,0:-339.323,-39.4349,0,-339.323,-39.4349,-339.323	1/2:76:0,45,31:0:0:45,31:1605,918:-168.177,-65.1622,-51.6159,-103.29,0,-93.9576	1/1:80:0,78,2:0:0:78,2:2781,72:-172.667,-23.4803,0,-167.104,-17.5776,-166.502	1/1:65:0,65,0:0:0:65,0:2291,0:-142.955,-19.567,0,-142.955,-19.567,-142.955	1/2:85:0,40,45:0:0:40,45:1434,1211:-166.428,-83.5091,-71.4679,-83.1709,0,-69.6246	1/2:78:0,45,33:0:0:45,33:1587,990:-173.235,-70.7025,-57.1561,-102.81,0,-92.8758	1/2:71:0,39,32:0:0:39,32:1400,864:-140.736,-59.7098,-47.9696,-81.277,0,-71.644	1/2:104:0,60,44:0:0:60,44:2152,1111:-189.767,-75.1854,-57.1236,-114.814,0,-101.568	1/2:77:0,40,37:0:0:40,37:1413,921:-138.043,-61.9701,-49.9289,-76.3043,0,-65.1662	1/1:36:0,36,0:0:0:36,0:1290,0:-79.2781,-10.8371,0,-79.2781,-10.8371,-79.2781	1/2:309:0,163,146:0:0:163,146:5773,4354:-682.74,-308.877,-259.809,-374.14,0,-330.19	1/1:160:0,160,0:0:0:160,0:5624,0:-377.681,-48.1648,0,-377.681,-48.1648,-377.681	1/2:185:0,57,128:0:0:57,128:2021,4057:-429.382,-292.228,-275.069,-137.45,0,-98.9184	1/2:83:0,40,43:0:0:40,43:1427,1284:-183.371,-91.4445,-79.4033,-92.2059,0,-79.2616	1/1:136:0,136,0:0:0:136,0:4821,0:-322.356,-40.9401,0,-322.356,-40.9401,-322.356	1/1:104:0,104,0:0:0:104,0:3715,0:-247.129,-31.3071,0,-247.129,-31.3071,-247.129	1/2:424:0,211,213:0:0:211,213:7444,6684:-986.712,-480.62,-417.103,-506.384,0,-442.265	1/2:188:0,107,81:0:0:107,81:3768,2181:-370.635,-150.233,-118.023,-220.651,0,-196.268	1/2:44:0,15,29:0:0:15,29:525,783:-85.0088,-54.1345,-49.6191,-31.1288,0,-22.399	1/2:362:0,221,139:0:0:221,139:7810,4397:-843.588,-316.285,-249.758,-527.341,0,-485.498	1/1:243:0,241,2:0:0:241,2:8560,54:-570.497,-72.5482,0,-566.781,-68.5914,-566.179	1/2:136:0,75,61:0:0:75,61:2650,1811:-299.276,-128.381,-105.804,-171.171,0,-152.808	1/1:4:0,4,0:0:0:4,0:144,0:-9.79982,-1.20412,0,-9.79982,-1.20412,-9.79982	1/2:19:0,6,13:0:0:6,13:203,351:-36.5525,-24.3996,-22.5934,-12.4055,0,-8.49208	1/2:9:0,2,7:0:0:2,7:72,175:-15.8149,-11.9706,-11.3685,-4.08506,0,-1.97785	1/1:5:0,5,0:0:0:5,0:178,0:-11.331,-1.50515,0,-11.331,-1.50515,-11.331	1/2:8:0,5,3:0:0:5,3:180,75:-14.8686,-5.25595,-3.7508,-9.84262,0,-8.93953	1/2:234:0,104,130:0:0:104,130:3681,4058:-540.918,-291.58,-260.273,-249.63,0,-210.496	1/1:329:0,329,0:0:0:329,0:11484,0:-773.431,-99.0389,0,-773.431,-99.0389,-773.431	1/1:70:0,69,0:0:0:69,0:2427,0:-151.972,-20.7711,0,-151.972,-20.7711,-151.972	.:.:.:.:.:.:.:.	1/1:191:0,185,6:0:0:185,6:6564,160:-437.584,-55.6906,0,-426.614,-44.4831,-424.808	1/1:46:0,46,0:0:0:46,0:1639,0:-109.342,-13.8474,0,-109.342,-13.8474,-109.342	1/2:175:0,111,64:0:0:111,64:3905,1728:-347.651,-119.18,-85.7653,-228.72,0,-209.454	1/2:113:0,58,55:0:0:58,55:2076,1629:-248.768,-115.431,-97.9713,-133.614,0,-117.057	1/2:86:0,38,48:0:0:38,48:1359,1424:-188.602,-100.984,-89.5451,-87.8975,0,-73.448	1/2:120:0,61,59:0:0:61,59:2144,1869:-278.09,-134.901,-116.539,-143.479,0,-125.718	1/2:207:0,110,97:0:0:110,97:3902,2415:-372.034,-162.151,-129.038,-210.114,0,-180.914	1/1:309:0,308,1:0:0:308,1:10858,30:-793.307,-92.7172,0,-791.179,-90.3191,-790.878	1/1:183:0,183,0:0:0:183,0:6488,0:-471.983,-55.0885,0,-471.983,-55.0885,-471.983	1/2:221:0,103,118:0:0:103,118:3662,3524:-485.661,-249.962,-218.956,-235.978,0,-200.456	1/1:211:0,211,0:0:0:211,0:7423,0:-565.777,-63.5173,0,-565.777,-63.5173,-565.777	1/2:20:0,12,8:0:0:12,8:428,240:-44.1317,-17.2958,-13.6835,-27.1105,0,-24.7023	1/1:175:0,175,0:0:0:175,0:6189,0:-383.787,-52.6803,0,-383.787,-52.6803,-383.787	1/1:53:0,52,0:0:0:52,0:1859,0:-141.442,-15.6536,0,-141.442,-15.6536,-141.442	1/2:18:0,12,5:0:0:12,5:417,123:-30.8318,-8.21961,-4.60725,-22.6248,0,-21.1197	1/1:189:0,186,3:0:0:186,3:6636,81:-442.07,-55.9916,0,-436.495,-50.1763,-435.592	1/2:59:0,26,33:0:0:26,33:923,981:-129.073,-69.6896,-61.8629,-59.662,0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chr09	20663277	.	G	T	41055.8	PASS	AB=0.504282;ABP=3.77283;AC=52;AF=0.276596;AN=188;AO=2429;CIGAR=1X;DP=9875;DPB=9875;DPRA=0.903213;EPP=5079.63;EPPR=15462.5;GTI=1;LEN=1;MEANALT=1.05;MQM=59.9185;MQMR=59.9801;NS=94;NUMALT=1;ODDS=2.17529;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85868;QR=264808;RO=7432;RPL=2406;RPP=5079.63;RPPR=15462.5;RPR=23;RUN=1;SAF=0;SAP=5277.52;SAR=2429;SRF=0;SRP=16141.4;SRR=7432;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:120:120,0:120:4283:0:0:0,-36.1236,-385.648	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:146:145,1:145:5166:1:36:0,-40.3521,-461.484	0/0:286:286,0:286:10190:0:0:0,-86.0946,-917.031	0/1:68:32,36:32:1152:36:1276:-94.673,0,-83.5201	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/1:127:65,62:65:2331:62:2228:-162.551,0,-171.818	0/0:124:123,1:123:4403:1:32:0,-34.1284,-393.241	0/1:162:95,67:95:3378:67:2324:-160.639,0,-255.469	0/0:109:108,1:108:3855:1:36:0,-29.214,-343.548	0/1:25:10,15:10:360:15:536:-41.0491,0,-25.2186	0/0:101:101,0:101:3579:0:0:0,-30.404,-322.317	0/0:93:93,0:93:3302:0:0:0,-27.9958,-297.397	0/1:51:27,24:27:954:24:856:-62.0082,0,-70.8214	0/1:87:35,50:35:1252:50:1783:-134.805,0,-87.0378	0/1:56:27,29:27:972:29:1036:-76.6962,0,-70.9402	0/1:32:20,12:20:716:12:432:-29.5882,0,-55.1348	0/1:39:16,23:16:563:23:824:-62.7431,0,-39.259	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/1:440:191,249:191:6762:249:8714:-651.801,0,-476.204	0/0:207:204,3:204:7289:3:108:0,-52.238,-645.981	0/1:149:47,102:47:1680:102:3636:-282.593,0,-106.634	0/1:142:71,71:71:2502:71:2487:-181.248,0,-182.684	0/0:100:99,1:99:3515:1:21:0,-28.0098,-314.466	0/0:163:162,1:162:5742:1:36:0,-45.4696,-513.301	0/1:254:135,119:135:4826:119:4219:-302.653,0,-358.033	0/1:282:131,149:131:4684:149:5276:-390.331,0,-337.073	0/1:46:27,19:27:968:19:665:-46.3254,0,-73.5891	0/1:249:132,117:132:4679:117:4155:-299.178,0,-346.305	0/0:97:97,0:97:3438:0:0:0,-29.1999,-309.635	0/1:91:58,33:58:2072:33:1184:-79.4742,0,-159.357	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:231:116,115:116:4116:115:4104:-300.009,0,-301.088	0/0:171:169,0:169:5979:0:0:0,-50.8741,-537.862	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.3	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:158:156,0:156:5570:0:0:0,-46.9607,-501.083	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:207:109,98:109:3874:98:3360:-240.299,0,-286.54	0/1:59:34,25:34:1181:25:884:-62.1176,0,-88.8243	0/1:71:36,35:36:1276:35:1253:-91.7016,0,-93.7699	0/1:149:83,66:83:2972:66:2324:-164.557,0,-222.858	0/1:115:73,42:73:2620:42:1473:-98.244,0,-201.429	0/0:197:197,0:197:7029:0:0:0,-59.3029,-632.673	0/0:129:129,0:129:4602:0:0:0,-38.8329,-414.345	0/1:88:36,52:36:1288:52:1856:-140.829,0,-89.7329	0/0:190:188,0:188:6717:0:0:0,-56.5936,-604.245	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.5363	0/0:198:195,3:195:6959:3:108:0,-49.5288,-616.3	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:149:149,0:149:5318:0:0:0,-44.8535,-478.75	0/1:59:33,26:33:1184:26:924:-65.7169,0,-89.1075	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:12:6,6:6:212:6:212:-15.8124,0,-15.8124	0/1:74:52,22:52:1851:22:765:-46.8909,0,-144.593	0/1:92:54,38:54:1940:38:1368:-95.7122,0,-147.181	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:178:76,102:76:2728:102:3617:-272.153,0,-192.179	0/0:152:152,0:152:5401:0:0:0,-45.7566,-486.224	0/1:82:38,44:38:1340:44:1560:-116.007,0,-96.2128	0/0:113:113,0:113:4044:0:0:0,-34.0164,-364.146	0/1:179:93,86:93:3319:86:3015:-217.696,0,-244.958	0/0:167:167,0:167:5906:0:0:0,-50.272,-531.654	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:46:19,27:19:669:27:968:-73.59,0,-46.6866	0/1:31:19,12:19:684:12:428:-29.5269,0,-52.5584	0/0:178:175,2:175:6230:2:72:0,-46.8054,-553.959	0/1:162:51,111:51:1824:111:3940:-306.009,0,-115.674	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.384	0/0:191:191,0:191:6813:0:0:0,-57.4967,-613.242	0/1:138:84,54:84:3000:54:1878:-127.745,0,-228.69	0/0:55:54,1:54:1922:1:36:0,-12.9584,-169.657	0/1:18:7,11:7:252:11:388:-29.8388,0,-17.6104	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.671	0/1:104:51,53:51:1805:53:1869:-137.18,0,-131.422	0/0:305:305,0:305:10885:0:0:0,-91.8141,-979.549	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.341	0/0:82:82,0:82:2899:0:0:0,-24.6845,-261.142	0/1:50:20,30:20:711:30:1064:-81.0202,0,-49.2641	0/0:135:135,0:135:4793:0:0:0,-40.639,-431.526	0/1:32:15,17:15:540:17:599:-44.6051,0,-39.3036	0/1:78:36,42:36:1292:42:1492:-111.094,0,-93.1034	0/0:89:89,0:89:3128:0:0:0,-26.7917,-281.745	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:61:32,29:32:1148:29:1032:-74.8306,0,-85.267	0/1:75:30,45:30:1062:45:1591:-120.902,0,-73.3127	0/0:106:103,0:103:3664:0:0:0,-31.0061,-329.606	0/0:123:123,0:123:4400:0:0:0,-37.0267,-396.167
chr09	20663394	.	C	A	26380.3	PASS	AB=0.481044;ABP=13.0539;AC=52;AF=0.276596;AN=188;AO=1562;CIGAR=1X;DP=6392;DPB=6392;DPRA=0.891519;EPP=3248.8;EPPR=10195.7;GTI=3;LEN=1;MEANALT=1.08333;MQM=59.4814;MQMR=59.9478;NS=94;NUMALT=1;ODDS=0.2239;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55868;QR=172552;RO=4825;RPL=1545;RPP=3248.8;RPPR=10204.3;RPR=17;RUN=1;SAF=0;SAP=3394.85;SAR=1562;SRF=1;SRP=10471.7;SRR=4824;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:81:80,1:80:2872:1:21:0,-22.2835,-256.613	0/0:178:178,0:178:6366:0:0:0,-53.5833,-573.027	0/1:54:30,24:30:1061:24:864:-61.7137,0,-79.5437	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:60:32,28:32:1148:28:1008:-72.9746,0,-85.568	0/0:96:96,0:96:3404:0:0:0,-28.8989,-306.572	0/1:75:42,33:42:1503:33:1188:-84.635,0,-112.987	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/1:39:20,19:20:720:19:672:-49.0611,0,-53.3886	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.956	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:45:28,17:28:1008:17:612:-41.8671,0,-77.445	0/1:70:36,34:36:1284:34:1220:-88.7121,0,-94.7913	0/1:42:17,25:17:612:25:900:-68.6685,0,-42.7702	0/1:26:18,8:18:648:8:288:-18.4324,0,-50.8251	0/1:17:12,5:12:432:5:180:-11.4228,0,-34.1037	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:244:125,118:125:4476:118:4217:-306.005,0,-329.492	0/0:100:100,0:100:3577:0:0:0,-30.103,-322.136	0/1:46:16,30:16:572:30:1065:-82.3096,0,-37.966	0/1:69:42,27:42:1500:27:964:-66.3011,0,-114.394	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:221:99,121:99:3533:121:4326:-323.018,0,-251.691	0/1:168:90,78:90:3221:78:2804:-202.004,0,-239.408	0/1:26:9,17:9:324:17:604:-46.8638,0,-21.6791	0/1:236:123,113:123:4424:113:4049:-293.543,0,-326.797	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:66:38,28:38:1353:28:1004:-70.8055,0,-102.2	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:14:12,2:12:428:2:72:-2.6223,0,-34.6444	0/1:9:7,2:7:237:2:72:-4.12745,0,-18.9498	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:14:4,10:4:144:10:348:-27.3528,0,-9.0992	0/1:126:62,63:62:2228:63:2236:-163.468,0,-162.795	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.265	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:90:41,49:41:1472:49:1732:-129.045,0,-105.683	0/1:42:21,21:21:752:21:756:-55.7078,0,-55.363	0/1:42:19,23:19:684:23:828:-61.1777,0,-49.2471	0/1:141:75,66:75:2669:66:2357:-169.937,0,-198.009	0/1:111:64,47:64:2296:47:1684:-118.027,0,-173.487	0/0:170:170,0:170:6070:0:0:0,-51.1751,-546.211	0/0:79:78,1:78:2808:1:36:0,-20.1831,-249.36	0/1:78:43,35:43:1544:35:1260:-90.2251,0,-115.773	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:94:94,0:94:3365:0:0:0,-28.2968,-303.064	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/0:118:118,0:118:4194:0:0:0,-35.5215,-376.828	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:81:37,44:37:1328:44:1584:-118.451,0,-95.4388	0/1:57:25,32:25:900:32:1148:-86.4619,0,-64.1623	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:130:67,63:67:2385:63:2252:-163.785,0,-175.772	0/0:140:138,2:138:4956:2:72:0,-35.3075,-439.35	0/1:48:29,19:29:1016:19:680:-47.0347,0,-77.2949	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:92:47,45:47:1658:45:1599:-115.666,0,-121.809	0/0:73:73,0:73:2615:0:0:0,-21.9752,-235.595	0/0:19:18,1:18:648:1:36:0,-2.12129,-55.0536	0/0:41:40,1:40:1440:1:36:0,-8.74395,-126.299	0/1:51:27,24:27:957:24:864:-62.7291,0,-71.0913	0/1:20:8,12:8:284:12:432:-33.1138,0,-19.8828	0/0:108:108,0:108:3865:0:0:0,-32.5112,-348.043	0/1:47:31,16:31:1108:16:576:-37.9742,0,-85.7953	0/0:104:102,1:102:3615:1:36:0,-27.7676,-321.937	0/0:94:94,0:94:3357:0:0:0,-28.2968,-302.345	0/1:139:83,56:83:2949:56:1997:-137.719,0,-223.8	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:63:62,1:62:2224:1:36:0,-15.3666,-196.826	0/1:79:50,29:50:1792:29:1039:-69.484,0,-137.781	0/0:211:211,0:211:7530:0:0:0,-63.5173,-677.652	0/0:74:73,1:73:2611:1:36:0,-18.6779,-231.639	0/0:59:59,0:59:2111:0:0:0,-17.7608,-190.258	0/1:33:10,23:10:356:23:824:-64.5493,0,-22.4473	0/0:85:84,1:84:3020:1:36:0,-21.9893,-268.429	0/1:27:13,14:13:468:14:489:-36.2108,0,-34.3318	0/1:50:20,30:20:716:30:1076:-81.9849,0,-49.7162	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/1:25:11,14:11:396:14:500:-37.781,0,-28.457	0/1:33:18,14:18:648:14:504:-35.8406,0,-48.8011	0/1:48:24,24:24:856:24:849:-62.2737,0,-62.9117	0/0:88:88,0:88:3145:0:0:0,-26.4906,-283.274	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625
chr09	20663410	.	T	C	25154.3	PASS	AB=0.476647;ABP=18.3248;AC=52;AF=0.276596;AN=188;AO=1551;CIGAR=1X;DP=6451;DPB=6451;DPRA=0.837385;EPP=3370.96;EPPR=10630.2;GTI=4;LEN=1;MEANALT=1;MQM=59.47;MQMR=59.9465;NS=94;NUMALT=1;ODDS=0.458245;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55252;QR=175284;RO=4898;RPL=1551;RPP=3370.96;RPPR=10638.9;RPR=0;RUN=1;SAF=0;SAP=3370.96;SAR=1551;SRF=1;SRP=10630.2;SRR=4897;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:83:82,0:82:2933:0:0:0,-24.6845,-264.001	0/0:181:181,0:181:6455:0:0:0,-54.4864,-581.034	0/1:54:30,24:30:1080:24:852:-60.6919,0,-81.2576	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:62:33,29:33:1173:29:1040:-75.2496,0,-87.2117	0/0:96:96,0:96:3433:0:0:0,-28.8989,-309.174	0/1:74:44,30:44:1565:30:1076:-74.8734,0,-118.863	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.441	0/1:40:21,19:21:741:19:684:-49.8422,0,-54.9704	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:44:27,17:27:968:17:612:-42.1681,0,-74.192	0/1:71:36,35:36:1292:35:1260:-92.0098,0,-95.2106	0/1:41:17,24:17:608:24:864:-65.7357,0,-42.7098	0/1:27:18,9:18:648:9:324:-21.3698,0,-50.5241	0/1:18:13,5:13:468:5:176:-10.7597,0,-37.0411	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/1:242:124,118:124:4444:118:4208:-305.856,0,-327.274	0/0:102:102,0:102:3653:0:0:0,-30.7051,-328.972	0/1:46:16,30:16:557:30:1061:-81.9469,0,-36.6082	0/1:70:43,27:43:1529:27:968:-66.3606,0,-116.699	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:223:101,122:101:3632:122:4345:-324.055,0,-259.954	0/1:171:94,77:94:3368:77:2758:-196.97,0,-251.803	0/1:25:8,17:8:288:17:597:-46.5304,0,-18.7417	0/1:236:124,112:124:4448:112:3960:-285.481,0,-328.957	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:66:38,28:38:1360:28:1008:-71.166,0,-102.833	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:13:4,9:4:144:9:309:-24.0354,0,-9.40023	0/1:125:62,63:62:2228:63:2209:-161.436,0,-163.155	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.863	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:126:126,0:126:4501:0:0:0,-37.9298,-405.258	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:89:43,46:43:1544:46:1641:-121.163,0,-112.461	0/1:42:22,20:22:788:20:720:-52.4717,0,-58.6015	0/1:43:20,23:20:720:23:828:-60.8767,0,-52.1845	0/1:138:74,64:74:2622:64:2269:-162.926,0,-194.683	0/1:109:64,45:64:2285:45:1620:-112.872,0,-173.098	0/0:170:170,0:170:6116:0:0:0,-51.1751,-550.347	0/0:81:80,1:80:2861:1:36:0,-20.7852,-254.127	0/1:81:44,37:44:1561:37:1316:-94.3584,0,-116.396	0/0:95:94,0:94:3372:0:0:0,-28.2968,-303.336	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/0:120:120,0:120:4300:0:0:0,-36.1236,-386.335	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	0/1:12:5,7:5:180:7:237:-18.0467,0,-12.9397	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:81:37,44:37:1309:44:1580:-118.091,0,-93.7261	0/1:57:25,32:25:900:32:1129:-84.7529,0,-64.1623	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:133:70,63:70:2512:63:2226:-160.541,0,-186.287	0/0:140:140,0:140:5010:0:0:0,-42.1442,-451.043	0/1:48:29,19:29:1013:19:680:-47.0347,0,-77.0253	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.391	0/1:94:49,45:49:1726:45:1595:-114.711,0,-127.324	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.16	0/0:19:18,1:18:648:1:36:0,-2.12129,-55.0536	0/0:41:40,1:40:1417:1:36:0,-8.74395,-124.227	0/1:52:28,24:28:1008:24:864:-62.4281,0,-75.3828	0/1:21:8,13:8:288:13:449:-34.3267,0,-19.9458	0/0:111:111,0:111:3981:0:0:0,-33.4143,-358.478	0/1:51:34,17:34:1220:17:582:-37.3287,0,-94.6671	0/0:108:107,1:107:3840:1:36:0,-28.913,-342.18	0/0:95:95,0:95:3397:0:0:0,-28.5978,-305.943	0/1:141:84,57:84:2990:57:2025:-139.636,0,-226.884	0/0:64:64,0:64:2270:0:0:0,-19.2659,-204.551	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:64:63,1:63:2248:1:36:0,-15.6676,-198.985	0/1:79:50,29:50:1792:29:1040:-69.1938,0,-137.781	0/0:216:216,0:216:7719:0:0:0,-65.0225,-694.653	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:33:10,23:10:360:23:824:-64.5493,0,-22.8103	0/0:84:83,1:83:2980:1:36:0,-21.6882,-264.833	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:49:20,29:20:720:29:1036:-78.7577,0,-50.3783	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/1:25:11,14:11:396:14:504:-38.1022,0,-28.457	0/1:33:18,15:18:648:15:540:-38.9841,0,-48.7179	0/1:48:24,24:24:860:24:864:-63.6275,0,-63.2724	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.633	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336
chr09	20732988	.	GGGA	AGGA,AGGG	639242	PASS	AB=0.505327,0.490134;ABP=5.67058,12.1365;AC=135,53;AF=0.718085,0.281915;AN=188;AO=18066,5348;CIGAR=1X3M,1X2M1X;DP=23513;DPB=23557.2;DPRA=0,1.26428;EPP=39215.5,11616;EPPR=39.9253;GTI=2;LEN=1,4;MEANALT=2.55319,2.85333;MQM=59.9112,59.7612;MQMR=58.7059;NS=94;NUMALT=2;ODDS=2.29144;PAIRED=0,0;PAIREDR=0;PAO=41,41;PQA=1434.5,1434.5;PQR=862;PRO=70;QA=642930,186117;QR=578;RO=17;RPL=9763,2517;RPP=259.221,43.0437;RPPR=4.1599;RPR=8303,2831;RUN=1,1;SAF=9763,2517;SAP=259.221,43.0437;SAR=8303,2831;SRF=10;SRP=4.1599;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:92:0,92,0:0:0:92,0:3259,0:-293.152,-27.6948,0,-293.152,-27.6948,-293.152	1/1:344:0,341,2:0:0:341,2:12172,70:-1095.01,-102.651,0,-1089.31,-96.8892,-1088.71	1/1:637:0,634,1:0:0:634,1:22555,36:-2028.89,-190.853,0,-2025.95,-187.891,-2025.65	1/1:546:0,544,2:0:0:544,2:19411,72:-1746.1,-163.76,0,-1740.22,-157.912,-1739.62	1/2:58:0,31,27:0:0:31,27:1095,939:-165.802,-76.6148,-67.2828,-89.4492,0,-81.3214	1/2:131:0,57,74:0:0:57,74:2027,2556:-373.146,-207.954,-190.795,-165.484,0,-143.208	1/2:325:0,183,140:0:0:183,140:6502,4870:-925.688,-395.883,-340.795,-529.85,0,-487.706	1/1:391:0,391,0:0:0:391,0:13905,0:-1251.15,-117.703,0,-1251.15,-117.703,-1251.15	1/2:389:0,222,158:0:0:222,158:7900,5464:-1087.75,-443.898,-377.069,-643.92,0,-596.357	1/1:268:0,267,0:0:0:267,0:9490,0:-853.708,-80.375,0,-853.708,-80.375,-853.708	1/2:156:0,71,85:0:0:71,85:2523,2974:-447.348,-241.751,-220.378,-205.949,0,-180.361	1/1:221:0,221,0:0:0:221,0:7851,0:-706.287,-66.5276,0,-706.287,-66.5276,-706.287	1/1:169:1,167,1:1:36:167,1:5918,36:-529.127,-47.3345,0,-526.492,-47.3355,-529.128	1/2:193:1,94,97:1:36:94,97:3282,3365:-537.264,-270.611,-245.252,-264.053,0,-237.791	1/2:202:1,103,98:1:36:103,98:3645,3430:-572.714,-276.116,-248.048,-293.953,0,-267.389	1/2:160:0,66,93:0:0:66,93:2341,3231:-453.571,-262.841,-242.973,-190.9,0,-162.904	1/2:169:0,91,78:0:0:91,78:3244,2684:-482.362,-217.926,-190.533,-264.39,0,-240.91	1/2:142:0,73,68:0:0:73,68:2588,2387:-405.225,-194.45,-172.475,-210.955,0,-190.485	1/1:97:0,97,0:0:0:97,0:3456,0:-311.251,-29.1999,0,-311.251,-29.1999,-311.251	1/2:453:0,223,227:0:0:223,227:7938,7949:-1293.87,-646.907,-579.777,-647.127,0,-578.793	1/1:412:1,408,1:1:36:408,1:14565,36:-1307.05,-119.873,0,-1304.42,-119.873,-1307.05	1/2:217:0,81,134:0:0:81,134:2908,4612:-611.816,-374.608,-350.225,-237.268,0,-196.93	1/2:266:1,145,120:1:30:145,120:5130,4117:-748.73,-331.204,-289.952,-415.476,0,-381.751	1/1:266:1,263,1:1:36:263,1:9393,35:-841.754,-76.2085,0,-839.209,-76.3051,-841.846	1/1:202:0,202,0:0:0:202,0:7201,0:-648.147,-60.8081,0,-648.147,-60.8081,-648.147	1/2:662:0,366,296:0:0:366,296:13053,10261:-1897.95,-833.905,-723.728,-1063.98,0,-974.874	1/2:778:0,366,408:0:0:366,408:13070,14211:-2219.42,-1154.23,-1044.06,-1065.26,0,-942.444	1/2:99:0,47,52:0:0:47,52:1676,1812:-284.327,-147.704,-133.556,-136.975,0,-121.322	1/2:563:0,259,302:0:0:259,302:9233,10529:-1608.84,-856.249,-778.282,-752.586,0,-661.675	1/1:289:4,284,1:4:143:284,1:10121,36:-897.592,-73.8345,0,-895.859,-82.5546,-907.218	1/2:243:0,135,107:0:0:135,107:4820,3728:-696.265,-303.301,-262.662,-393.105,0,-360.895	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/2:60:0,24,36:0:0:24,36:860,1247:-171.796,-101.669,-94.4447,-70.4795,0,-59.6424	2/2:10:0,1,9:0:0:1,9:27,322:-29.0436,-26.9236,-26.6226,-2.70927,-0.310517,0	1/1:29:0,29,0:0:0:29,0:1031,0:-93.1026,-8.72987,0,-93.1026,-8.72987,-93.1026	1/2:44:0,26,18:0:0:26,18:923,638:-127.173,-51.968,-44.1412,-75.2003,0,-69.7818	1/2:467:0,224,241:0:0:224,241:7938,8383:-1328.2,-681.552,-614.121,-646.654,0,-574.106	1/1:284:0,283,0:0:0:283,0:10065,0:-905.63,-85.1915,0,-905.63,-85.1915,-905.63	1/1:144:0,144,0:0:0:144,0:5102,0:-459.297,-43.3483,0,-459.297,-43.3483,-459.297	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:449:1,440,8:1:35:440,8:15651,277:-1404.55,-129.603,0,-1382.35,-109.861,-1382.79	1/1:84:2,82,0:2:61:82,0:2934,0:-258.463,-19.8749,0,-259.065,-24.6845,-263.95	1/2:337:0,169,168:0:0:169,168:6019,5878:-968.598,-478.199,-427.325,-490.392,0,-439.819	1/2:165:0,80,83:0:0:80,83:2868,2934:-472.929,-239.01,-214.928,-233.973,0,-208.988	1/2:160:0,82,78:0:0:82,78:2910,2706:-457.34,-220.24,-195.555,-237.385,0,-213.905	1/2:319:0,168,151:0:0:168,151:5992,5273:-917.394,-428.934,-378.361,-488.502,0,-443.046	1/2:271:0,146,123:0:0:146,123:5162,4265:-766.937,-346.576,-302.626,-420.351,0,-383.324	1/1:575:0,567,4:0:0:567,4:20222,144:-1819.07,-170.684,0,-1807.32,-158.87,-1806.12	1/1:314:1,312,0:1:33:312,0:11088,0:-994.492,-91.2132,0,-994.793,-93.9214,-997.462	1/2:205:0,100,105:0:0:100,105:3566,3693:-591.06,-300.637,-270.534,-290.533,0,-258.925	1/1:460:0,459,0:0:0:459,0:16310,0:-1467.22,-138.173,0,-1467.22,-138.173,-1467.22	1/2:16:0,4,12:0:0:4,12:144,412:-45.5504,-33.7966,-32.5925,-12.1095,0,-8.49714	1/1:467:0,466,1:0:0:466,1:16607,32:-1494.1,-140.28,0,-1491.52,-137.615,-1491.22	1/1:120:0,120,0:0:0:120,0:4250,0:-382.409,-36.1236,0,-382.409,-36.123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chr09	20800797	.	C	T	52845.4	PASS	AB=0.488379;ABP=10.7825;AC=52;AF=0.276596;AN=188;AO=3249;CIGAR=1X;DP=13276;DPB=13276;DPRA=1.00822;EPP=7058.12;EPPR=21761.2;GTI=0;LEN=1;MEANALT=1.08197;MQM=59.9788;MQMR=59.9971;NS=94;NUMALT=1;ODDS=3.52353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=114692;QR=358446;RO=10020;RPL=0;RPP=7058.12;RPPR=21761.2;RPR=3249;RUN=1;SAF=3249;SAP=7058.12;SAR=0;SRF=10020;SRP=21761.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:77:77,0:77:2748:0:0:0,-23.1793,-247.563	0/0:232:232,0:232:8312:0:0:0,-69.839,-748.07	0/0:148:148,0:148:5268:0:0:0,-44.5524,-474.26	0/0:338:334,3:334:11964:3:108:0,-91.7318,-1066.54	0/1:110:64,46:64:2284:46:1619:-112.884,0,-172.709	0/1:47:33,14:33:1180:14:484:-29.7401,0,-92.3596	0/1:243:128,114:128:4584:114:3986:-285.728,0,-339.516	0/0:184:184,0:184:6536:0:0:0,-55.3895,-588.322	0/1:130:62,68:62:2186:68:2361:-173.616,0,-157.869	0/0:145:145,0:145:5191:0:0:0,-43.6493,-467.329	0/1:88:45,43:45:1608:43:1520:-110.602,0,-118.519	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:86:25,61:25:900:61:2152:-168.06,0,-55.4324	0/1:70:36,34:36:1287:34:1208:-87.954,0,-95.0607	0/1:52:27,25:27:968:25:892:-64.9461,0,-71.7838	0/1:82:37,45:37:1328:45:1593:-118.974,0,-95.1378	0/1:64:31,33:31:1116:33:1158:-85.2591,0,-81.4858	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:470:244,225:244:8683:225:7955:-574.442,0,-639.922	0/0:225:225,0:225:8056:0:0:0,-67.7317,-725.059	0/1:266:81,185:81:2892:185:6542:-508.8,0,-180.443	0/1:153:80,73:80:2838:73:2608:-188.911,0,-209.599	0/0:197:195,2:195:6973:2:72:0,-52.4662,-620.797	0/0:106:106,0:106:3773:0:0:0,-31.9092,-339.769	0/1:440:216,224:216:7721:224:7928:-581.104,0,-562.47	0/1:251:132,119:132:4701:119:4220:-304.426,0,-347.692	0/1:38:16,22:16:576:22:764:-57.6404,0,-40.7358	0/1:475:266,209:266:9494:209:7388:-521.991,0,-711.43	0/0:173:173,0:173:6204:0:0:0,-52.0782,-558.455	0/1:178:111,67:111:3961:67:2333:-156.633,0,-303.097	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:52:32,20:32:1148:20:712:-48.7531,0,-87.9763	0/1:6:2,4:2:72:4:136:-10.7694,0,-5.03054	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:43:22,21:22:765:21:732:-53.2571,0,-56.2234	0/1:240:114,126:114:4088:126:4446:-328.067,0,-295.858	0/0:313:313,0:313:11204:0:0:0,-94.2224,-1008.22	0/0:88:88,0:88:3133:0:0:0,-26.4906,-282.195	0/1:13:8,5:8:284:5:168:-11.5375,0,-21.99	0/0:174:173,1:173:6181:1:36:0,-48.7809,-552.789	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:206:104,102:104:3732:102:3604:-262.559,0,-274.068	0/1:68:34,34:34:1224:34:1203:-88.105,0,-89.997	0/1:60:28,32:28:1008:32:1140:-84.8474,0,-72.9746	0/1:155:83,72:83:2956:72:2532:-181.474,0,-219.615	0/1:224:138,86:138:4948:86:3032:-205.683,0,-378.038	0/0:182:181,1:181:6473:1:36:0,-51.1892,-579.056	0/0:212:212,0:212:7588:0:0:0,-63.8184,-682.959	0/1:182:103,79:103:3704:79:2760:-193.859,0,-278.773	0/0:263:263,0:263:9418:0:0:0,-79.1709,-847.577	0/1:21:14,7:14:504:7:244:-15.9778,0,-39.3765	0/0:213:213,0:213:7628:0:0:0,-64.1194,-686.557	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/1:17:10,7:10:356:7:236:-16.4524,0,-27.2637	0/0:186:186,0:186:6641:0:0:0,-55.9916,-597.769	0/1:85:41,44:41:1472:44:1553:-114.472,0,-107.189	0/1:20:10,10:10:360:10:352:-25.9976,0,-26.7237	0/1:31:19,12:19:684:12:424:-29.1645,0,-52.5584	0/1:110:63,47:63:2268:47:1676:-118.014,0,-171.269	0/1:141:74,67:74:2648:67:2371:-171.203,0,-196.121	0/1:14:7,6:7:252:6:212:-15.281,0,-18.8868	0/1:296:162,134:162:5792:134:4756:-339.098,0,-432.29	0/0:267:265,2:265:9489:2:68:0,-73.9173,-847.509	0/1:92:43,49:43:1525:49:1732:-128.47,0,-109.846	0/0:140:139,0:139:4976:0:0:0,-41.8432,-447.777	0/1:255:133,122:133:4768:122:4312:-311.5,0,-352.514	0/0:183:183,0:183:6548:0:0:0,-55.0885,-589.403	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:125:125,0:125:4479:0:0:0,-37.6287,-403.278	0/1:101:49,52:49:1751:52:1845:-135.924,0,-127.469	0/1:49:21,28:21:748:28:988:-74.4834,0,-52.8948	0/0:198:198,0:198:7084:0:0:0,-59.6039,-637.618	0/1:86:42,44:42:1492:44:1545:-113.453,0,-108.686	0/0:282:282,0:282:10084:0:0:0,-84.8905,-907.495	0/0:248:248,0:248:8880:0:0:0,-74.6554,-799.184	0/1:150:74,76:74:2652:76:2700:-198.091,0,-193.772	0/0:123:122,1:122:4380:1:32:0,-33.8274,-391.173	0/1:28:13,15:13:468:15:528:-39.4225,0,-34.0308	0/0:165:164,1:164:5857:1:36:0,-46.0717,-523.643	0/1:177:102,75:102:3648:75:2618:-182.532,0,-275.242	0/0:401:399,1:399:14312:1:36:0,-117.174,-1284.23	0/0:110:109,0:109:3908:0:0:0,-32.8123,-351.702	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/1:97:47,50:47:1684:50:1769:-130.291,0,-122.647	0/0:167:166,1:166:5948:1:36:0,-46.6737,-531.829	0/1:48:21,27:21:756:27:968:-72.9879,0,-53.9178	0/1:87:42,45:42:1512:45:1580:-116.298,0,-110.185	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:54:24,30:24:864:30:1068:-80.1764,0,-61.8269	0/1:108:58,50:58:2076:50:1766:-125.933,0,-154.599	0/1:67:16,51:16:576:51:1813:-143.281,0,-32.006	0/0:134:134,0:134:4758:0:0:0,-40.338,-428.378	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486
chr09	20800827	.	G	A	55434.7	PASS	AB=0.495094;ABP=4.39513;AC=52;AF=0.276596;AN=188;AO=3293;CIGAR=1X;DP=13218;DPB=13218;DPRA=1.05249;EPP=7136.31;EPPR=21498.4;GTI=0;LEN=1;MEANALT=1.06349;MQM=59.9872;MQMR=59.9999;NS=94;NUMALT=1;ODDS=6.72515;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117823;QR=354652;RO=9919;RPL=3291;RPP=7136.31;RPPR=21507.1;RPR=2;RUN=1;SAF=3293;SAP=7153.67;SAR=0;SRF=9918;SRP=21533.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.364	0/0:229:229,0:229:8189:0:0:0,-68.9359,-737.023	0/0:142:142,0:142:5073:0:0:0,-42.7463,-456.713	0/0:334:332,1:332:11892:1:36:0,-97.0045,-1066.54	0/1:110:64,46:64:2292:46:1634:-114.233,0,-173.428	0/1:47:33,14:33:1160:14:489:-30.1905,0,-90.5555	0/1:247:127,120:127:4542:120:4292:-312.101,0,-334.591	0/0:184:184,0:184:6571:0:0:0,-55.3895,-591.47	0/1:133:60,73:60:2148:73:2628:-196.729,0,-153.55	0/0:141:141,0:141:5064:0:0:0,-42.4452,-455.903	0/1:88:47,41:47:1684:41:1476:-106.646,0,-125.356	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:80:80,0:80:2857:0:0:0,-24.0824,-257.366	0/1:88:24,64:24:842:64:2290:-179.869,0,-49.6064	0/1:67:32,35:32:1148:35:1256:-93.1763,0,-83.4608	0/1:54:27,27:27:968:27:972:-71.5423,0,-71.1817	0/1:84:38,46:38:1364:46:1618:-120.619,0,-97.7742	0/1:63:31,32:31:1108:32:1148:-84.6649,0,-81.0661	0/0:56:56,0:56:2007:0:0:0,-16.8577,-180.903	0/1:465:243,222:243:8681:222:7951:-575.632,0,-641.302	0/0:224:224,0:224:8012:0:0:0,-67.4307,-721.099	0/1:264:79,184:79:2801:184:6552:-510.228,0,-172.796	0/1:155:78,77:78:2796:77:2727:-199.01,0,-205.22	0/0:194:193,1:193:6912:1:36:0,-54.8015,-618.548	0/0:105:105,0:105:3780:0:0:0,-31.6081,-340.396	0/1:442:213,229:213:7636:229:8213:-606.124,0,-554.22	0/1:250:131,119:131:4675:119:4226:-305.262,0,-345.652	0/1:38:16,22:16:572:22:792:-60.1665,0,-40.3743	0/1:479:265,213:265:9472:213:7629:-542.392,0,-708.187	0/0:173:173,0:173:6168:0:0:0,-52.0782,-555.216	0/1:176:109,67:109:3874:67:2404:-163.635,0,-295.872	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:53:32,21:32:1148:21:748:-51.6907,0,-87.6752	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:44:21,23:21:737:23:828:-61.5988,0,-53.4053	0/1:245:112,133:112:4002:133:4748:-353.724,0,-286.616	0/0:304:304,0:304:10866:0:0:0,-91.5131,-977.837	0/0:87:87,0:87:3094:0:0:0,-26.1896,-278.685	0/1:13:8,5:8:284:5:176:-12.2716,0,-21.99	0/0:173:172,1:172:6163:1:36:0,-48.4799,-551.169	0/0:57:57,0:57:2022:0:0:0,-17.1587,-182.252	0/1:204:102,102:102:3651:102:3660:-268.193,0,-267.383	0/1:67:35,32:35:1260:32:1148:-83.4608,0,-93.5365	0/1:57:27,30:27:972:30:1080:-80.3545,0,-70.6392	0/1:153:76,77:76:2732:77:2764:-202.93,0,-200.065	0/1:225:135,90:135:4852:90:3232:-223.369,0,-369.1	0/0:177:176,1:176:6286:1:36:0,-49.684,-562.233	0/0:214:213,0:213:7635:0:0:0,-64.1194,-686.825	0/1:178:100,78:100:3592:78:2804:-199.016,0,-269.902	0/0:258:258,0:258:9217:0:0:0,-77.6657,-829.501	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/0:214:214,0:214:7657:0:0:0,-64.4204,-689.164	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/0:187:187,0:187:6669:0:0:0,-56.2926,-600.286	0/1:85:41,44:41:1476:44:1576:-116.544,0,-107.549	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/1:31:19,12:19:684:12:428:-29.5269,0,-52.5584	0/1:110:63,47:63:2260:47:1688:-119.094,0,-170.549	0/1:138:71,67:71:2540:67:2408:-175.434,0,-187.309	0/1:15:9,6:9:320:6:212:-14.9093,0,-24.6269	0/1:298:163,135:163:5836:135:4833:-345.416,0,-435.643	0/0:266:264,2:264:9433:2:72:0,-73.2373,-842.092	0/1:93:43,50:43:1532:50:1781:-132.576,0,-110.177	0/0:143:142,1:142:5071:1:36:0,-39.449,-452.937	0/1:251:130,121:130:4664:121:4337:-314.944,0,-344.362	0/0:181:181,0:181:6431:0:0:0,-54.4864,-578.878	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/0:124:124,0:124:4434:0:0:0,-37.3277,-399.23	0/1:103:49,54:49:1756:54:1929:-142.879,0,-127.318	0/1:48:19,29:19:684:29:1021:-77.7508,0,-47.4409	0/0:194:194,0:194:6946:0:0:0,-58.3998,-625.204	0/1:86:42,44:42:1508:44:1580:-116.603,0,-110.126	0/0:284:283,0:283:10133:0:0:0,-85.1915,-911.577	0/0:248:246,1:246:8824:1:36:0,-71.116,-790.543	0/1:146:72,74:72:2580:74:2649:-194.704,0,-188.499	0/0:123:122,1:122:4352:1:36:0,-33.4284,-388.255	0/1:28:13,15:13:464:15:536:-40.146,0,-33.6687	0/0:166:165,1:165:5915:1:36:0,-46.3727,-528.859	0/1:181:104,77:104:3713:77:2751:-193.344,0,-279.884	0/0:400:398,2:398:14229:2:72:0,-113.575,-1273.53	0/0:106:106,0:106:3761:0:0:0,-31.9092,-338.688	0/0:70:70,0:70:2494:0:0:0,-21.0721,-224.712	0/1:96:47,49:47:1663:49:1741:-128.075,0,-121.058	0/0:158:157,1:157:5616:1:36:0,-43.9645,-501.961	0/1:47:21,26:21:752:26:932:-70.0505,0,-53.8578	0/1:87:40,47:40:1428:47:1692:-126.377,0,-102.628	0/0:80:80,0:80:2855:0:0:0,-24.0824,-257.188	0/1:54:24,30:24:860:30:1076:-80.8972,0,-61.4662	0/1:111:58,53:58:2076:53:1904:-137.446,0,-153.696	0/1:65:15,50:15:540:50:1792:-141.996,0,-29.3696	0/0:139:139,0:139:4951:0:0:0,-41.8432,-445.739	0/0:101:101,0:101:3588:0:0:0,-30.404,-323.127
chr09	20800925	.	AAA	AAG,GAG	236688	PASS	AB=0.476558,0.517982;ABP=28.3602,17.926;AC=135,51;AF=0.725806,0.274194;AN=186;AO=8270,2775;CIGAR=2M1X,1X1M1X;DP=11094;DPB=11094;DPRA=0,1.01152;EPP=17718.7,6011.49;EPPR=0;GTI=0;LEN=1,3;MEANALT=2.12903,2.50794;MQM=59.9943,59.92;MQMR=0;NS=93;NUMALT=2;ODDS=18.9193;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=293567,97461;QR=0;RO=0;RPL=8242,2773;RPP=17718.7,6011.49;RPPR=0;RPR=28,2;RUN=1,1;SAF=0,0;SAP=17961.1,6028.85;SAR=8270,2775;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33,0:0:0:33,0:1166,0:-105.246,-9.93399,0,-105.246,-9.93399,-105.246	1/1:144:0,144,0:0:0:144,0:5110,0:-460.046,-43.3483,0,-460.046,-43.3483,-460.046	1/1:134:0,132,1:0:0:132,1:4678,36:-420.888,-39.736,0,-417.95,-36.7336,-417.649	1/1:269:0,268,1:0:0:268,1:9539,36:-858.112,-80.676,0,-855.174,-77.3788,-854.873	1/2:125:0,68,57:0:0:68,57:2396,2013:-359.348,-164.275,-143.805,-195.426,0,-178.267	1/2:35:0,10,24:0:0:10,24:347,834:-95.9968,-67.7906,-64.7803,-28.1947,0,-20.97	1/2:200:0,100,99:0:0:100,99:3567,3471:-573.224,-282.441,-252.338,-290.776,0,-260.974	1/1:195:0,195,0:0:0:195,0:6907,0:-621.703,-58.7009,0,-621.703,-58.7009,-621.703	1/2:141:0,60,80:0:0:60,80:2148,2801:-403.141,-227.969,-209.908,-175.244,0,-151.162	1/1:122:0,122,0:0:0:122,0:4330,0:-389.876,-36.7257,0,-389.876,-36.7257,-389.876	1/2:64:0,34,29:0:0:34,29:1204,1019:-181.102,-83.0221,-72.7871,-98.1787,0,-89.4488	1/1:81:0,81,0:0:0:81,0:2888,0:-260.157,-24.3834,0,-260.157,-24.3834,-260.157	1/1:86:0,86,0:0:0:86,0:3059,0:-275.54,-25.8886,0,-275.54,-25.8886,-275.54	1/2:75:0,32,41:0:0:32,41:1135,1431:-208.915,-116.441,-106.808,-92.5232,0,-80.181	1/2:79:0,37,42:0:0:37,42:1317,1483:-228.459,-121.12,-109.982,-107.693,0,-95.0501	1/2:53:0,25,28:0:0:25,28:883,975:-151.542,-79.631,-72.1053,-72.2617,0,-63.8329	1/2:61:0,26,35:0:0:26,35:928,1232:-176.295,-100.638,-92.8111,-76.0115,0,-65.4754	1/2:72:0,33,38:0:0:33,38:1176,1337:-204.689,-108.83,-98.8958,-95.8541,0,-84.4149	1/1:46:0,45,0:0:0:45,0:1583,0:-142.397,-13.5464,0,-142.397,-13.5464,-142.397	1/2:221:0,126,95:0:0:126,95:4461,3339:-635.512,-272.131,-234.201,-363.734,0,-335.136	1/1:226:0,225,1:0:0:225,1:7993,36:-719.037,-67.7318,0,-716.099,-64.4345,-715.798	1/2:185:0,60,125:0:0:60,125:2097,4405:-529.393,-358.807,-340.745,-170.936,0,-133.308	1/2:102:0,50,52:0:0:50,52:1775,1795:-290.805,-146.174,-131.122,-144.981,0,-129.327	1/1:115:0,115,0:0:0:115,0:4074,0:-366.849,-34.6185,0,-366.849,-34.6185,-366.849	1/1:60:0,60,0:0:0:60,0:2139,0:-192.777,-18.0618,0,-192.777,-18.0618,-192.777	1/2:375:0,175,198:0:0:175,198:6178,6920:-1066.07,-562.979,-510.299,-503.159,0,-443.555	1/2:206:0,115,91:0:0:115,91:4041,3155:-585.698,-256.783,-222.164,-329.263,0,-301.87	1/2:32:0,11,20:0:0:11,20:392,714:-90.3143,-58.3594,-55.0481,-32.0957,0,-26.0751	1/2:308:0,168,138:0:0:168,138:5960,4849:-880.406,-394.82,-344.247,-485.732,0,-444.189	1/1:130:0,130,0:0:0:130,0:4633,0:-417.133,-39.1339,0,-417.133,-39.1339,-417.133	1/2:179:0,105,73:0:0:105,73:3739,2554:-512.354,-207.601,-175.993,-304.892,0,-282.917	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/2:26:0,14,12:0:0:14,12:490,432:-75.4701,-35.6088,-31.3944,-40.2165,0,-36.6041	1/2:12:0,5,7:0:0:5,7:180,244:-34.8835,-20.1916,-18.6865,-15.0469,0,-12.9397	1/1:13:0,13,0:0:0:13,0:455,0:-41.282,-3.91339,0,-41.282,-3.91339,-41.282	1/2:13:0,5,8:0:0:5,8:180,280:-37.8222,-23.1313,-21.6261,-15.0469,0,-12.6387	1/2:240:0,115,125:0:0:115,125:4074,4409:-691.234,-359.356,-324.737,-332.232,0,-294.603	1/1:236:0,230,0:0:0:230,0:8183,0:-736.146,-69.2369,0,-736.146,-69.2369,-736.146	1/1:62:0,61,0:0:0:61,0:2174,0:-195.565,-18.3628,0,-195.565,-18.3628,-195.565	.:.:.:.:.:.:.:.	1/1:178:0,176,1:0:0:176,1:6271,34:-564.211,-52.9813,0,-561.454,-50.1583,-561.153	1/1:50:0,50,0:0:0:50,0:1774,0:-159.942,-15.0515,0,-159.942,-15.0515,-159.942	1/2:105:0,59,45:0:0:59,45:2088,1582:-298.833,-128.757,-110.996,-170.068,0,-156.522	1/2:76:0,38,38:0:0:38,38:1351,1328:-218.476,-108.378,-96.939,-110.45,0,-99.0113	1/2:66:0,28,37:0:0:28,37:981,1312:-186.812,-106.99,-98.5611,-79.9196,0,-68.7815	1/2:136:0,62,73:0:0:62,73:2173,2574:-386.485,-209.664,-191.001,-176.901,0,-154.925	1/2:172:0,79,92:0:0:79,92:2811,3250:-493.763,-264.669,-240.888,-229.089,0,-201.394	1/1:255:0,255,0:0:0:255,0:9016,0:-811.425,-76.7627,0,-811.425,-76.7627,-811.425	1/1:199:0,199,0:0:0:199,0:7086,0:-637.804,-59.905,0,-637.804,-59.905,-637.804	1/2:192:0,84,107:0:0:84,107:2984,3755:-548.876,-305.721,-280.434,-243.286,0,-211.076	1/1:253:0,252,0:0:0:252,0:8971,0:-807.124,-75.8596,0,-807.124,-75.8596,-807.124	1/2:11:0,3,8:0:0:3,8:108,286:-32.4902,-23.6772,-22.7742,-9.17208,0,-6.76384	1/1:162:0,160,2:0:0:160,2:5698,72:-512.581,-48.1648,0,-506.706,-41.9301,-506.104	1/1:41:0,40,1:0:0:40,1:1421,36:-127.827,-12.0412,0,-124.889,-8.74396,-124.588	1/2:22:0,12,10:0:0:12,10:423,335:-61.9129,-27.463,-23.8507,-34.7927,0,-31.7824	1/1:181:0,177,2:0:0:177,2:6289,69:-565.765,-53.2823,0,-560.159,-47.6267,-559.557	1/2:38:0,12,25:0:0:12,25:432,875:-106.559,-7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chr09	20800937	.	T	A	46747.6	PASS	AB=0.514286;ABP=12.4407;AC=51;AF=0.274194;AN=186;AO=2757;CIGAR=1X;DP=11214;DPB=11214;DPRA=0.883682;EPP=5989.76;EPPR=18356.3;GTI=0;LEN=1;MEANALT=1.05;MQM=59.9198;MQMR=59.9854;NS=93;NUMALT=1;ODDS=19.1808;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98734;QR=300633;RO=8452;RPL=2757;RPP=5989.76;RPPR=18356.3;RPR=0;RUN=1;SAF=0;SAP=5989.76;SAR=2757;SRF=0;SRP=18356.3;SRR=8452;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:142:142,0:142:5058:0:0:0,-42.7463,-455.364	0/0:138:137,1:137:4875:1:36:0,-37.9439,-435.302	0/0:274:274,0:274:9745:0:0:0,-82.4822,-876.998	0/1:127:70,57:70:2508:57:2048:-146.353,0,-187.741	0/1:35:12,23:12:432:23:828:-64.3081,0,-28.6851	0/1:199:99,100:99:3484:100:3592:-263.581,0,-253.864	0/0:205:205,0:205:7300:0:0:0,-61.7111,-657.048	0/1:144:65,79:65:2317:79:2840:-212.489,0,-165.44	0/0:122:122,0:122:4357:0:0:0,-36.7257,-392.304	0/1:64:34,30:34:1201:30:1060:-76.4239,0,-89.1277	0/0:83:83,0:83:2942:0:0:0,-24.9855,-265.012	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:77:35,42:35:1256:42:1512:-113.195,0,-89.9758	0/1:79:37,42:37:1302:42:1512:-112.593,0,-93.6959	0/1:52:24,28:24:845:28:1004:-75.0223,0,-60.7135	0/1:63:28,35:28:1004:35:1256:-94.3722,0,-71.711	0/1:71:33,38:33:1188:38:1360:-101.327,0,-85.8555	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692	0/1:220:125,94:125:4389:94:3376:-237.77,0,-328.897	0/0:231:231,0:231:8178:0:0:0,-69.5379,-736.035	0/1:184:60,124:60:2080:124:4456:-345.119,0,-132.075	0/1:102:50,52:50:1781:52:1838:-134.991,0,-129.866	0/0:116:116,0:116:4133:0:0:0,-34.9195,-372.154	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/1:380:176,204:176:6239:204:7298:-542.469,0,-447.216	0/1:206:115,91:115:4128:91:3268:-232.327,0,-309.691	0/1:33:13,20:13:460:20:720:-55.1948,0,-31.8014	0/1:313:175,138:175:6221:138:4968:-353.043,0,-465.768	0/0:135:135,0:135:4802:0:0:0,-40.639,-432.335	0/1:177:108,68:108:3788:68:2401:-162.988,0,-287.926	0/0:26:26,0:26:906:0:0:0,-7.82678,-81.8509	0/1:26:14,12:14:489:12:428:-31.032,0,-36.5112	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:13:5,8:5:180:8:273:-20.9868,0,-12.6387	0/1:241:118,123:118:4210:123:4424:-325.781,0,-306.53	0/0:246:246,0:246:8730:0:0:0,-74.0534,-785.69	0/0:63:63,0:63:2229:0:0:0,-18.9649,-200.873	.:.:.:.:.:.:.:.	0/0:177:177,0:177:6321:0:0:0,-53.2823,-568.982	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/1:107:62,45:62:2187:45:1597:-111.799,0,-164.881	0/1:76:39,37:39:1389:37:1328:-96.944,0,-102.429	0/1:65:28,37:28:1004:37:1332:-100.615,0,-71.1089	0/1:138:65,73:65:2302:73:2620:-194.505,0,-165.896	0/1:171:77,94:77:2734:94:3368:-251.86,0,-194.824	0/0:259:259,0:259:9205:0:0:0,-77.9668,-828.419	0/0:203:203,0:203:7212:0:0:0,-61.1091,-649.134	0/1:194:87,107:87:3093:107:3826:-286.136,0,-220.198	0/0:251:251,0:251:8935:0:0:0,-75.5585,-804.134	0/1:11:3,8:3:93:8:288:-22.9561,0,-5.3654	0/0:164:162,2:162:5767:2:72:0,-42.5322,-512.307	0/0:41:40,1:40:1421:1:36:0,-8.74395,-124.587	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/0:182:179,2:179:6389:2:57:0,-49.408,-569.616	0/1:39:13,26:13:468:26:913:-70.7436,0,-30.7195	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:23:14,9:14:500:9:324:-22.5822,0,-38.4125	0/1:77:32,45:32:1125:45:1620:-122.911,0,-78.3767	0/1:147:78,69:78:2785:69:2450:-176.5,0,-206.638	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5455	0/1:263:144,119:144:5106:119:4276:-305.845,0,-380.509	0/0:243:238,5:238:8456:5:176:0,-56.9653,-744.859	0/1:75:16,59:16:557:59:2124:-168.846,0,-27.8779	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/1:193:97,96:97:3401:96:3444:-252.07,0,-248.202	0/0:141:141,0:141:5056:0:0:0,-42.4452,-455.184	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/1:69:40,29:40:1428:29:1028:-72.0613,0,-108.046	0/1:23:12,11:12:424:11:377:-27.3342,0,-31.5727	0/0:171:170,0:170:6046:0:0:0,-51.1751,-543.885	0/1:85:47,38:47:1676:38:1353:-96.4757,0,-125.54	0/0:242:242,0:242:8605:0:0:0,-72.8493,-774.445	0/0:239:239,0:239:8526:0:0:0,-71.9462,-767.34	0/1:113:39,74:39:1389:74:2641:-203.919,0,-91.2905	0/0:139:133,6:133:4723:6:216:0,-22.0527,-405.437	0/1:20:10,10:10:352:10:360:-26.7237,0,-25.9976	0/0:169:168,1:168:6009:1:36:0,-47.2758,-537.316	0/1:130:64,66:64:2300:66:2353:-172.893,0,-168.127	0/0:368:366,2:366:12977:2:72:0,-103.942,-1160.91	0/0:113:113,0:113:4045:0:0:0,-34.0164,-364.106	0/0:57:57,0:57:2014:0:0:0,-17.1587,-181.53	0/1:82:35,47:35:1260:47:1688:-127.52,0,-89.021	0/0:148:147,1:147:5230:1:36:0,-40.9542,-467.24	0/1:70:34,36:34:1216:36:1296:-95.8718,0,-88.6745	0/1:89:37,52:37:1328:52:1872:-141.967,0,-93.0306	0/0:65:65,0:65:2320:0:0:0,-19.5669,-208.433	0/1:44:24,20:24:860:20:705:-50.5275,0,-64.4765	0/1:63:32,31:32:1140:31:1116:-81.5965,0,-83.9443	0/1:82:29,53:29:1044:53:1908:-147.313,0,-69.5903	0/0:118:117,0:117:4162:0:0:0,-35.2205,-374.402	0/0:115:115,0:115:4082:0:0:0,-34.6184,-367.566
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chr09	20844297	.	G	A	56563.7	PASS	AB=0.496018;ABP=3.85764;AC=51;AF=0.274194;AN=186;AO=3308;CIGAR=1X;DP=13537;DPB=13537;DPRA=1.03099;EPP=7186.24;EPPR=22078.3;GTI=3;LEN=1;MEANALT=1.16129;MQM=59.9477;MQMR=59.9934;NS=93;NUMALT=1;ODDS=2.47114;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118074;QR=364204;RO=10210;RPL=3308;RPP=7186.24;RPPR=22078.3;RPR=0;RUN=1;SAF=0;SAP=7186.24;SAR=3308;SRF=0;SRP=22173.7;SRR=10210;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:307:307,0:307:10969:0:0:0,-92.4162,-987.108	0/0:275:274,0:274:9771:0:0:0,-82.4822,-879.092	0/0:360:359,0:359:12812:0:0:0,-108.07,-1152.69	0/1:125:66,59:66:2346:59:2095:-151.188,0,-173.769	0/1:31:24,7:24:860:7:252:-13.697,0,-68.3899	0/1:188:111,77:111:3955:77:2732:-189.53,0,-299.549	0/0:240:239,0:239:8534:0:0:0,-71.9462,-767.701	0/1:83:43,40:43:1544:40:1440:-104.912,0,-114.268	0/0:109:109,0:109:3870:0:0:0,-32.8123,-348.497	0/1:68:36,32:36:1288:32:1148:-83.1598,0,-95.7535	0/0:81:80,1:80:2864:1:36:0,-20.7852,-254.399	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/1:84:40,44:40:1432:44:1580:-117.205,0,-103.891	0/1:74:36,38:36:1288:38:1336:-98.2612,0,-93.9474	0/1:52:24,28:24:860:28:1004:-74.8636,0,-62.0683	0/1:72:36,36:36:1283:36:1292:-94.9096,0,-94.0985	0/1:52:27,25:27:968:25:898:-65.4872,0,-71.7838	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:278:137,141:137:4911:141:5046:-370.598,0,-358.453	0/0:192:192,0:192:6833:0:0:0,-57.7978,-615.041	0/1:182:64,118:64:2276:118:4223:-325.392,0,-150.315	0/1:125:57,68:57:2024:68:2436:-181.867,0,-144.804	0/0:127:126,1:126:4496:1:36:0,-34.6325,-401.167	0/0:96:96,0:96:3403:0:0:0,-28.8989,-306.487	0/1:482:247,234:247:8818:234:8322:-603.982,0,-648.6	0/1:340:178,162:178:6353:162:5742:-414.497,0,-469.511	0/1:35:20,15:20:716:15:536:-38.0388,0,-54.2317	0/1:321:183,138:183:6540:138:4903:-344.792,0,-492.054	0/0:244:243,0:243:8679:0:0:0,-73.1503,-780.733	0/1:138:64,74:64:2270:74:2629:-195.315,0,-163.019	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:6:4,2:4:135:2:72:-5.03054,0,-10.6763	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	1/1:241:2,237:2:72:237:8465:-755.015,-65.4693,0	0/1:207:108,99:108:3868:99:3532:-255.775,0,-286.002	0/0:373:370,2:370:13203:2:68:0,-105.879,-1181.61	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:236:231,4:231:8255:4:144:0,-57.7883,-729.648	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:213:117,96:117:4177:96:3448:-246.412,0,-311.991	0/1:88:52,36:52:1842:36:1292:-90.0931,0,-139.568	0/1:60:33,27:33:1184:27:968:-69.3756,0,-88.8065	0/1:139:70,69:70:2480:69:2468:-180.531,0,-181.609	0/1:206:94,111:94:3349:111:3979:-296.22,0,-239.555	0/0:319:318,1:318:11349:1:36:0,-92.4303,-1017.7	0/0:133:133,0:133:4716:0:0:0,-40.037,-424.602	0/1:248:108,139:108:3867:139:4979:-373.571,0,-273.609	0/0:253:253,0:253:9055:0:0:0,-76.1606,-814.927	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:281:280,1:280:9969:1:36:0,-80.9912,-893.557	0/0:108:107,1:107:3802:1:36:0,-28.913,-338.781	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:201:201,0:201:7169:0:0:0,-60.507,-645.265	0/1:105:47,58:47:1679:58:2084:-156.222,0,-119.788	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:21:4,17:4:144:17:612:-49.0918,0,-6.99199	0/1:128:65,63:65:2319:63:2260:-165.131,0,-170.438	0/1:124:65,59:65:2336:59:2094:-151.401,0,-173.172	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:305:151,153:151:5396:153:5469:-400.613,0,-394.048	0/0:388:387,1:387:13778:1:32:0,-113.6,-1236.6	0/1:164:79,83:79:2820:83:2957:-217.276,0,-204.95	0/0:175:175,0:175:6227:0:0:0,-52.6802,-560.528	0/1:250:133,117:133:4734:117:4146:-298.066,0,-350.735	0/0:228:226,2:226:8039:2:64:0,-62.5561,-717.452	0/0:32:32,0:32:1125:0:0:0,-9.63296,-101.556	0/0:82:81,0:81:2908:0:0:0,-24.3834,-261.595	0/1:81:37,44:37:1323:44:1580:-118.108,0,-94.9879	0/1:29:15,14:15:528:14:504:-36.9682,0,-39.1215	0/0:206:203,3:203:7177:3:108:0,-51.937,-635.916	0/1:87:37,50:37:1312:50:1792:-135.145,0,-92.1921	0/0:251:251,0:251:8975:0:0:0,-75.5585,-807.731	0/0:289:289,0:289:10352:0:0:0,-86.9977,-931.601	0/1:285:147,137:147:5235:137:4867:-352.413,0,-385.525	0/0:208:207,0:207:7393:0:0:0,-62.3132,-665.057	.:.:.:.:.:.:.:.	0/0:168:167,1:167:5962:1:36:0,-46.9748,-533.089	0/1:179:92,87:92:3287:87:3115:-226.692,0,-242.165	0/0:289:289,0:289:10230:0:0:0,-86.9977,-920.639	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:69:45,24:45:1608:24:845:-55.5976,0,-124.239	0/0:114:114,0:114:4052:0:0:0,-34.3174,-364.868	0/1:57:32,25:32:1140:25:892:-63.4404,0,-85.7505	0/1:93:47,46:47:1679:46:1644:-120.253,0,-123.401	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:58:25,33:25:892:33:1176:-88.688,0,-63.1399	0/1:108:45,63:45:1600:63:2252:-170.427,0,-111.779	0/1:74:26,48:26:928:48:1724:-133.169,0,-61.562	0/0:207:204,1:204:7284:1:36:0,-58.4477,-652.065	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968
chr09	20846100	.	A	G	24731.5	PASS	AB=0.498159;ABP=3.09826;AC=51;AF=0.277174;AN=184;AO=1495;CIGAR=1X;DP=6327;DPB=6327;DPRA=0.766972;EPP=3240.68;EPPR=10460.9;GTI=1;LEN=1;MEANALT=1;MQM=59.5164;MQMR=59.9975;NS=92;NUMALT=1;ODDS=0.772709;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53367;QR=173169;RO=4832;RPL=1494;RPP=3240.68;RPPR=10460.9;RPR=1;RUN=1;SAF=0;SAP=3249.36;SAR=1495;SRF=0;SRP=10495.6;SRR=4832;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:92:92,0:92:3299:0:0:0,-27.6948,-297.128	0/0:94:94,0:94:3384:0:0:0,-28.2968,-304.774	0/0:149:149,0:149:5341:0:0:0,-44.8535,-480.82	0/1:74:42,32:42:1491:32:1140:-80.5632,0,-112.208	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:64:31,33:31:1112:33:1180:-86.9029,0,-81.1254	0/0:136:136,0:136:4888:0:0:0,-40.9401,-440.07	0/1:72:44,28:44:1584:28:1004:-68.9716,0,-121.177	0/0:74:74,0:74:2638:0:0:0,-22.2762,-237.666	0/1:19:4,15:4:144:15:540:-43.2154,0,-7.59405	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:34:33,1:33:1184:1:36:0,-6.63674,-103.27	0/1:42:21,21:21:756:21:756:-55.7216,0,-55.724	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/1:29:13,16:13:468:16:572:-43.0836,0,-33.7298	0/1:31:13,18:13:468:18:648:-49.3195,0,-33.1277	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:122:62,60:62:2208:60:2133:-155.504,0,-162.257	0/0:85:85,0:85:3047:0:0:0,-25.5875,-274.459	0/1:134:36,98:36:1288:98:3487:-273.574,0,-75.8856	0/1:62:47,15:47:1683:15:536:-29.9076,0,-133.092	0/0:143:143,0:143:5132:0:0:0,-43.0473,-462.02	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/1:273:161,112:161:5757:112:4008:-278.689,0,-436.062	0/1:142:75,67:75:2669:67:2404:-173.854,0,-197.708	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:192:100,92:100:3592:92:3291:-238.566,0,-265.688	0/0:135:134,1:134:4768:1:36:0,-37.0408,-425.68	0/1:110:65,45:65:2332:45:1596:-110.796,0,-177.026	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	.:.:.:.:.:.:.:.	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:72:25,47:25:892:47:1662:-128.08,0,-58.9255	0/0:198:198,0:198:7090:0:0:0,-59.6039,-638.155	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	.:.:.:.:.:.:.:.	0/0:107:104,3:104:3721:3:108:0,-22.135,-325.014	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:145:60,85:60:2144:85:3048:-230.897,0,-149.578	0/1:23:11,12:11:396:12:409:-30.2102,0,-29.0591	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	0/1:99:43,56:43:1539:56:1999:-150.291,0,-109	0/1:78:44,34:44:1576:34:1216:-86.2548,0,-118.651	0/0:164:164,0:164:5857:0:0:0,-49.3689,-527.241	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.87	0/1:91:45,46:45:1620:46:1627:-119.305,0,-118.696	0/0:163:163,0:163:5848:0:0:0,-49.0679,-526.43	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:124:124,0:124:4456:0:0:0,-37.3277,-401.209	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/1:31:17,14:17:604:14:500:-36.0042,0,-45.3587	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:51:31,20:31:1116:20:720:-49.7625,0,-85.3992	0/1:69:33,36:33:1188:36:1286:-95.2375,0,-86.4575	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:174:65,109:65:2336:109:3879:-296.387,0,-158.12	0/0:176:176,0:176:6308:0:0:0,-52.9813,-567.812	0/1:57:31,26:31:1101:26:936:-67.4008,0,-82.2397	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:137:79,58:79:2836:58:2071:-145.398,0,-214.237	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:44:17,27:17:612:27:964:-73.6736,0,-42.1681	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:22:13,9:13:468:9:324:-22.8693,0,-35.837	0/0:151:151,0:151:5405:0:0:0,-45.4555,-486.579	0/0:109:108,1:108:3888:1:36:0,-29.214,-346.503	0/1:121:67,54:67:2388:54:1935:-137.983,0,-178.75	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:77:32,45:32:1152:45:1599:-121.012,0,-80.8108	0/0:143:143,0:143:5144:0:0:0,-43.0473,-463.098	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:30:17,13:17:612:13:464:-33.0666,0,-46.3825	0/0:70:69,1:69:2463:1:32:0,-17.8728,-218.725	0/1:30:13,17:13:468:17:608:-46.0018,0,-33.4287	0/1:43:26,17:26:928:17:601:-41.451,0,-70.894	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:18:5,13:5:176:13:464:-36.679,0,-10.7665	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229
chr09	20890623	.	A	C	78378	PASS	AB=0.433304;ABP=435.761;AC=94;AF=0.5;AN=188;AO=4853;CIGAR=1X;DP=11200;DPB=11200;DPRA=0;EPP=10308;EPPR=13431.4;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9714;MQMR=59.9852;NS=94;NUMALT=1;ODDS=108.093;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172813;QR=226948;RO=6343;RPL=26;RPP=10316.5;RPPR=13431.4;RPR=4827;RUN=1;SAF=4852;SAP=10532.5;SAR=1;SRF=6343;SRP=13776.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:103:56,47:56:1996:47:1661:-118.769,0,-148.908	0/1:106:50,56:50:1781:56:2004:-148.724,0,-128.662	0/1:324:170,153:170:6080:153:5437:-391.243,0,-449.71	0/1:335:181,154:181:6457:154:5460:-390.685,0,-480.372	0/1:74:50,24:50:1788:24:860:-55.4456,0,-138.926	0/1:31:18,13:18:648:13:464:-32.7656,0,-49.32	0/1:135:83,52:83:2972:52:1864:-127.4,0,-227.074	0/1:187:90,97:90:3224:97:3446:-254.061,0,-234.079	0/1:147:102,45:102:3660:45:1607:-100.668,0,-285.352	0/1:138:80,58:80:2868:58:2076:-145.568,0,-216.815	0/1:60:37,23:37:1332:23:816:-55.6986,0,-102.121	0/1:165:83,81:83:2971:81:2880:-209.709,0,-217.893	0/1:149:75,74:75:2692:74:2626:-191.734,0,-197.671	0/1:60:40,20:40:1432:20:703:-45.5317,0,-111.116	0/1:95:56,39:56:2012:39:1400:-97.7013,0,-152.755	0/1:77:44,33:44:1580:33:1153:-80.8937,0,-119.312	0/1:52:39,13:39:1400:13:468:-26.8061,0,-110.645	0/1:46:30,16:30:1076:16:576:-38.3276,0,-83.3055	0/1:48:22,26:22:788:26:920:-68.6676,0,-56.7954	0/1:148:99,49:99:3548:49:1764:-114.491,0,-274.976	0/1:177:92,85:92:3288:85:3052:-221.626,0,-242.858	0/1:116:89,27:89:3169:27:972:-52.8784,0,-250.514	0/1:138:95,43:95:3400:43:1533:-96.7198,0,-264.673	0/1:84:51,33:51:1820:33:1188:-81.9421,0,-138.795	0/1:215:99,116:99:3560:116:4099:-304.304,0,-255.885	0/1:248:178,70:178:6365:70:2474:-148.257,0,-498.284	0/1:257:168,89:168:6001:89:3171:-208.25,0,-462.83	0/1:45:32,13:32:1148:13:464:-28.5512,0,-90.0835	0/1:358:171,187:171:6072:187:6676:-493.151,0,-438.812	0/1:155:78,77:78:2789:77:2742:-200.363,0,-204.589	0/1:142:94,48:94:3352:48:1707:-111.169,0,-259.138	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:21:15,6:15:528:6:179:-10.0816,0,-41.5297	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:20:13,7:13:468:7:244:-16.2788,0,-36.439	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:231:149,82:149:5344:82:2905:-192.148,0,-411.554	0/1:183:84,99:84:2997:99:3524:-262.283,0,-214.872	0/1:63:32,31:32:1152:31:1097:-80.0731,0,-85.0253	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:235:119,116:119:4268:116:4129:-301.053,0,-313.555	0/1:59:25,34:25:900:34:1224:-92.7063,0,-63.5602	0/1:175:111,64:111:3965:64:2272:-152.063,0,-304.36	0/1:66:45,21:45:1608:21:752:-48.1383,0,-125.142	0/1:74:53,21:53:1900:21:754:-45.9106,0,-149.002	0/1:156:96,60:96:3425:60:2138:-145.726,0,-261.502	0/1:138:96,42:96:3428:42:1495:-93.3017,0,-267.192	0/1:218:116,102:116:4148:102:3642:-262.36,0,-307.879	0/1:167:91,76:91:3264:76:2712:-194.05,0,-243.338	0/1:87:59,28:59:2124:28:990:-63.223,0,-165.239	0/1:103:61,42:61:2161:42:1500:-104.288,0,-163.749	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:158:85,73:85:3036:73:2608:-187.406,0,-225.907	0/1:120:62,58:62:2213:58:2067:-150.177,0,-163.309	0/1:5:3,2:3:108:2:63:-4.478,0,-8.57002	0/1:175:75,100:75:2669:100:3556:-267.557,0,-187.756	0/1:50:37,13:37:1332:13:460:-26.6839,0,-105.131	0/1:12:9,3:9:309:3:108:-6.46281,0,-24.5284	0/1:19:13,6:13:464:6:216:-14.0709,0,-36.3779	0/1:85:51,34:51:1832:34:1220:-84.5193,0,-139.573	0/1:130:87,43:87:3109:43:1523:-98.2285,0,-240.902	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:174:131,43:131:4677:43:1540:-86.5139,0,-368.711	0/1:210:97,112:97:3476:112:3946:-292.018,0,-249.865	0/1:66:32,34:32:1152:34:1207:-89.0673,0,-84.1222	0/1:118:59,59:59:2120:59:2078:-151.768,0,-155.547	0/1:199:144,55:144:5172:55:1955:-116.32,0,-405.713	0/1:165:87,78:87:3116:78:2787:-201.4,0,-230.997	0/1:49:24,25:24:860:25:896:-66.2099,0,-62.7434	0/1:92:40,52:40:1417:52:1847:-138.815,0,-100.131	0/1:57:41,16:41:1476:16:567:-34.202,0,-115.977	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:234:121,113:121:4301:113:4017:-291.281,0,-316.827	0/1:113:77,36:77:2749:36:1288:-82.2072,0,-213.634	0/1:204:101,103:101:3632:103:3661:-268.285,0,-265.673	0/1:155:70,85:70:2503:85:3052:-228.249,0,-178.862	0/1:176:116,60:116:4168:60:2141:-139.975,0,-322.32	0/1:75:33,41:33:1184:41:1472:-110.14,0,-84.2323	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:112:50,62:50:1792:62:2212:-165.63,0,-127.847	0/1:155:81,74:81:2874:74:2631:-190.378,0,-212.235	0/1:208:122,86:122:4344:86:3080:-214.814,0,-328.523	0/1:82:45,37:45:1601:37:1332:-95.4979,0,-119.694	0/1:178:80,98:80:2868:98:3516:-263.066,0,-204.774	0/1:63:46,17:46:1656:17:612:-36.4485,0,-130.364	0/1:229:101,128:101:3624:128:4577:-343.113,0,-257.423	0/1:23:18,5:18:648:5:158:-7.6081,0,-51.7282	0/1:86:61,25:61:2192:25:896:-55.0718,0,-171.657	0/1:142:61,81:61:2188:81:2878:-216.511,0,-154.439	0/1:48:32,16:32:1148:16:576:-37.7255,0,-89.1804	0/1:114:75,39:75:2696:39:1379:-90.0894,0,-208.566	0/1:80:58,22:58:2084:22:788:-47.1624,0,-163.748	0/1:159:71,88:71:2533:88:3112:-232.443,0,-180.356	0/1:200:93,107:93:3344:107:3819:-283.702,0,-240.97
chr09	20956774	.	C	T	188751	PASS	AB=0.517104;ABP=15.7869;AC=137;AF=0.728723;AN=188;AO=8814;CIGAR=1X;DP=11277;DPB=11277;DPRA=16.3217;EPP=18986.3;EPPR=5168.33;GTI=7;LEN=1;MEANALT=1.01087;MQM=59.9305;MQMR=59.9716;NS=94;NUMALT=1;ODDS=0.414464;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=314967;QR=87340;RO=2462;RPL=20;RPP=18969;RPPR=5168.33;RPR=8794;RUN=1;SAF=2;SAP=19125;SAR=8812;SRF=0;SRP=5349.18;SRR=2462;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1684:-151.791,-14.1484,0	1/1:272:2,270:2:72:270:9668:-863.154,-75.0434,0	1/1:111:0,111:0:0:111:3984:-358.747,-33.4143,0	1/1:200:2,198:2:72:198:7068:-629.333,-53.3693,0	0/1:75:26,49:26:908:49:1756:-135.517,0,-59.4491	0/1:27:5,22:5:176:22:784:-62.7561,0,-8.05721	0/1:194:107,87:107:3807:87:3113:-221.995,0,-284.429	1/1:248:0,248:0:0:248:8875:-798.726,-74.6554,0	0/1:133:51,82:51:1814:82:2916:-222.634,0,-123.503	1/1:149:0,149:0:0:149:5332:-480.002,-44.8535,0	0/1:74:33,41:33:1161:41:1460:-109.42,0,-82.5185	1/1:104:0,104:0:0:104:3683:-331.673,-31.3071,0	1/1:98:0,98:0:0:98:3494:-314.67,-29.5009,0	1/1:70:0,70:0:0:70:2503:-225.522,-21.0721,0	0/1:86:27,59:27:968:59:2095:-162.931,0,-61.5488	0/1:78:43,35:43:1491:35:1247:-89.0537,0,-110.999	0/1:82:40,42:40:1400:42:1500:-110.61,0,-101.61	0/1:66:26,40:26:928:40:1427:-108.859,0,-63.9703	1/1:75:0,75:0:0:75:2676:-241.084,-22.5773,0	0/1:216:104,112:104:3723:112:3987:-293.989,0,-270.248	1/1:233:0,233:0:0:233:8351:-751.591,-70.14,0	0/1:135:82,53:82:2903:53:1904:-130.998,0,-220.868	0/1:129:69,60:69:2463:60:2144:-154.395,0,-183.091	1/1:202:0,202:0:0:202:7228:-650.572,-60.8081,0	1/1:120:0,120:0:0:120:4271:-384.565,-36.1236,0	0/1:409:204,205:204:7299:205:7305:-534.343,0,-533.838	0/1:316:143,173:143:5096:173:6190:-462.069,0,-363.661	0/1:46:20,26:20:720:26:936:-70.7121,0,-51.2814	1/1:207:0,207:0:0:207:7391:-665.191,-62.3132,0	1/1:168:0,168:0:0:168:6007:-540.729,-50.573,0	0/1:142:65,77:65:2299:77:2768:-206.614,0,-164.425	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:21:11,10:11:392:10:356:-26.0596,0,-29.2984	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:269:120,149:120:4283:149:5317:-397.686,0,-304.671	1/1:199:0,199:0:0:199:7134:-642.108,-59.905,0	1/1:107:0,107:0:0:107:3827:-344.626,-32.2102,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:150:4,146:4:144:146:5175:-452.428,-31.8409,0	1/1:62:1,61:1:36:61:2188:-193.586,-15.0656,0	0/1:136:47,89:47:1667:89:3204:-247.503,0,-109.377	0/1:137:64,73:64:2275:73:2573:-190.576,0,-163.771	0/1:97:44,53:44:1544:53:1904:-142.435,0,-110.049	0/1:117:67,50:67:2383:50:1796:-126.701,0,-179.237	0/1:117:67,49:67:2375:49:1760:-123.387,0,-178.729	1/1:168:1,167:1:36:167:5968:-533.625,-46.9748,0	1/1:180:0,180:0:0:180:6437:-579.416,-54.1854,0	0/1:180:92,88:92:3250:88:3155:-229.989,0,-238.533	1/1:189:1,188:1:36:188:6696:-599.119,-53.2964,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:138:0,138:0:0:138:4953:-445.918,-41.5421,0	1/1:58:2,56:2:72:56:2008:-174.157,-10.623,0	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	1/1:149:0,149:0:0:149:5328:-479.653,-44.8535,0	0/1:77:37,40:37:1320:40:1415:-104.467,0,-95.9226	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:106:62,44:62:2201:44:1580:-110.582,0,-166.444	1/1:126:1,125:1:36:125:4462:-398.153,-34.3315,0	1/1:12:0,12:0:0:12:426:-38.6774,-3.61236,0	0/1:175:89,86:89:3122:86:3088:-225.467,0,-228.525	1/1:180:0,180:0:0:180:6426:-578.428,-54.1854,0	0/1:103:48,55:48:1711:55:1966:-146.208,0,-123.269	1/1:78:0,78:0:0:78:2791:-251.43,-23.4803,0	0/1:183:79,104:79:2797:104:3723:-280.18,0,-196.863	1/1:196:0,196:0:0:196:7025:-632.31,-59.0019,0	1/1:33:1,32:1:36:32:1148:-100.032,-6.33572,0	1/1:96:0,96:0:0:96:3432:-309.049,-28.8989,0	0/1:94:50,44:50:1775:44:1556:-112.032,0,-131.735	0/1:32:20,12:20:716:12:432:-29.5882,0,-55.1348	1/1:164:0,164:0:0:164:5870:-528.392,-49.3689,0	0/1:120:58,62:58:2043:62:2218:-163.761,0,-148.018	1/1:242:2,240:2:72:240:8547:-762.157,-66.0125,0	1/1:217:0,217:0:0:217:7793:-701.388,-65.3235,0	0/1:85:36,49:36:1292:49:1756:-132.727,0,-90.9962	1/1:163:0,163:0:0:163:5788:-520.975,-49.0679,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:148:71,77:71:2493:77:2760:-204.084,0,-180.068	0/1:130:71,59:71:2483:59:2094:-149.592,0,-184.589	1/1:206:3,203:3:108:203:7283:-645.439,-51.937,0	1/1:149:0,149:0:0:149:5320:-478.894,-44.8535,0	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	0/1:96:52,44:52:1851:44:1555:-111.341,0,-137.97	1/1:184:0,184:0:0:184:6557:-590.212,-55.3895,0	0/1:49:25,24:25:892:24:864:-63.3321,0,-65.8492	0/1:89:40,49:40:1418:49:1764:-132.252,0,-101.116	1/1:89:0,89:0:0:89:3165:-285.075,-26.7917,0	0/1:46:18,28:18:644:28:996:-76.1075,0,-44.4432	0/1:105:57,48:57:1994:48:1715:-123.027,0,-148.12	0/1:65:43,22:43:1511:22:788:-51.6778,0,-116.713	1/1:157:0,157:0:0:157:5604:-504.352,-47.2617,0	1/1:130:0,130:0:0:130:4622:-416.146,-39.1339,0
chr09	20956795	.	T	C	187113	PASS	AB=0.513589;ABP=11.0953;AC=137;AF=0.728723;AN=188;AO=8760;CIGAR=1X;DP=11249;DPB=11249;DPRA=16.2812;EPP=18921;EPPR=5355.78;GTI=8;LEN=1;MEANALT=1.04348;MQM=59.9365;MQMR=59.9742;NS=94;NUMALT=1;ODDS=0.986909;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313100;QR=89105;RO=2485;RPL=8748;RPP=18921;RPPR=5355.78;RPR=12;RUN=1;SAF=0;SAP=19025.1;SAR=8760;SRF=0;SRP=5399.12;SRR=2485;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1696:-152.919,-14.4494,0	1/1:271:2,268:2:72:268:9563:-853.792,-74.7746,0	1/1:108:0,108:0:0:108:3862:-347.774,-32.5112,0	1/1:197:2,195:2:72:195:6943:-618.096,-52.4662,0	0/1:68:22,46:22:792:46:1629:-126.407,0,-51.1356	0/1:27:5,22:5:180:22:768:-61.3107,0,-8.42425	0/1:199:109,90:109:3897:90:3224:-230.475,0,-291.017	1/1:247:0,245:0:0:245:8754:-787.508,-73.7524,0	0/1:132:52,80:52:1857:80:2868:-218.613,0,-127.672	1/1:146:0,146:0:0:146:5214:-469.381,-43.9504,0	0/1:77:35,42:35:1256:42:1512:-113.195,0,-90.166	1/1:102:0,102:0:0:102:3646:-328.344,-30.7051,0	1/1:97:0,97:0:0:97:3466:-312.151,-29.1999,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	0/1:84:27,57:27:972:57:2052:-159.665,0,-62.5114	0/1:77:44,33:44:1580:33:1188:-84.0493,0,-119.312	0/1:82:40,42:40:1436:42:1504:-110.97,0,-104.853	0/1:65:25,40:25:900:40:1429:-109.34,0,-61.7541	1/1:78:0,78:0:0:78:2804:-252.599,-23.4803,0	0/1:217:107,110:107:3836:110:3944:-289.791,0,-280.112	1/1:232:0,232:0:0:232:8257:-743.141,-69.839,0	0/1:133:81,52:81:2893:52:1856:-127.283,0,-220.568	0/1:127:69,58:69:2480:58:2075:-148.789,0,-185.222	1/1:204:0,204:0:0:204:7308:-657.767,-61.4101,0	1/1:120:0,120:0:0:120:4308:-387.895,-36.1236,0	0/1:409:206,203:206:7381:203:7273:-531.499,0,-541.213	0/1:324:151,173:151:5402:173:6195:-460.112,0,-388.773	0/1:46:20,26:20:720:26:936:-70.7121,0,-51.2814	1/1:205:0,205:0:0:205:7352:-661.727,-61.7112,0	1/1:164:0,164:0:0:164:5873:-528.669,-49.3689,0	0/1:144:66,78:66:2364:78:2788:-207.81,0,-169.67	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:270:121,149:121:4348:149:5319:-397.567,0,-310.215	1/1:198:0,198:0:0:198:7084:-637.611,-59.6039,0	1/1:106:0,106:0:0:106:3793:-341.567,-31.9092,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:146:4,142:4:140:142:5033:-440.029,-31.0058,0	1/1:64:1,63:1:36:63:2255:-199.609,-15.6676,0	0/1:139:51,88:51:1832:88:3112:-238.445,0,-123.273	0/1:142:68,74:68:2448:74:2647:-195.726,0,-177.828	0/1:101:46,55:46:1652:55:1971:-147.258,0,-118.564	0/1:116:67,49:67:2404:49:1764:-124.123,0,-181.427	0/1:118:68,50:68:2432:50:1776:-124.536,0,-183.614	1/1:163:1,162:1:36:162:5759:-514.829,-45.4696,0	1/1:176:0,176:0:0:176:6313:-568.259,-52.9813,0	0/1:182:92,90:92:3304:90:3216:-234.875,0,-242.786	1/1:186:1,185:1:36:185:6625:-592.301,-52.3933,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:140:0,140:0:0:140:5015:-451.496,-42.1442,0	1/1:55:2,53:2:72:53:1885:-163.09,-9.71993,0	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	1/1:143:0,143:0:0:143:5111:-460.133,-43.0473,0	0/1:78:36,42:36:1292:42:1503:-112.084,0,-93.1034	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:106:62,44:62:2217:44:1561:-108.871,0,-167.883	1/1:127:0,127:0:0:127:4559:-410.475,-38.2308,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:173:88,85:88:3156:85:3033:-221.121,0,-232.186	1/1:180:0,180:0:0:180:6430:-578.788,-54.1854,0	0/1:102:49,53:49:1749:53:1892:-139.853,0,-126.987	1/1:79:0,79:0:0:79:2808:-252.957,-23.7814,0	0/1:183:80,102:80:2864:102:3641:-272.747,0,-202.848	1/1:198:0,198:0:0:198:7088:-637.977,-59.6039,0	1/1:33:1,32:1:36:32:1152:-100.392,-6.33572,0	1/1:94:0,94:0:0:94:3348:-300.903,-28.2968,0	0/1:93:49,44:49:1764:44:1563:-112.965,0,-131.048	0/1:33:21,12:21:752:12:432:-29.2872,0,-58.0723	1/1:163:0,163:0:0:163:5847:-526.323,-49.0679,0	0/1:118:60,58:60:2141:58:2072:-151.229,0,-157.434	1/1:237:1,236:1:36:236:8411:-753.124,-67.7458,0	1/1:217:0,217:0:0:217:7725:-695.282,-65.3235,0	0/1:77:31,46:31:1116:46:1640:-124.706,0,-77.5724	1/1:162:0,162:0:0:162:5811:-523.102,-48.7669,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:153:72,81:72:2588:81:2904:-215.533,0,-187.111	0/1:129:71,58:71:2544:58:2075:-148.172,0,-190.378	1/1:208:3,205:3:108:205:7321:-648.863,-52.5391,0	1/1:148:0,148:0:0:148:5299:-476.956,-44.5524,0	1/1:95:0,95:0:0:95:3408:-306.934,-28.5979,0	0/1:95:51,44:51:1836:44:1575:-113.443,0,-136.923	1/1:184:1,183:1:36:183:6505:-581.937,-51.7912,0	0/1:52:26,26:26:924:26:936:-68.9059,0,-67.8241	0/1:89:40,49:40:1440:49:1746:-130.632,0,-103.098	1/1:89:0,89:0:0:89:3179:-286.335,-26.7917,0	0/1:46:18,28:18:648:28:1004:-76.8285,0,-44.8045	0/1:104:57,47:57:2052:47:1680:-120.179,0,-153.64	0/1:67:43,24:43:1540:24:864:-57.9136,0,-118.724	1/1:156:0,156:0:0:156:5596:-503.631,-46.9607,0	1/1:131:0,131:0:0:131:4679:-421.272,-39.4349,0
chr09	20956840	.	T	C	16678.2	PASS	AB=0.541274;ABP=29.7188;AC=48;AF=0.258065;AN=186;AO=984;CIGAR=1X;DP=4164;DPB=4164;DPRA=0.906886;EPP=2079.37;EPPR=6757.08;GTI=2;LEN=1;MEANALT=1.01852;MQM=50.0549;MQMR=59.2369;NS=93;NUMALT=1;ODDS=0.206721;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35204;QR=110819;RO=3178;RPL=7;RPP=2079.37;RPPR=6757.08;RPR=977;RUN=1;SAF=984;SAP=2139.74;SAR=0;SRF=3178;SRP=6903.95;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:864:0:0:0,-7.52575,-78.0737	0/0:57:57,0:57:1985:0:0:0,-17.1587,-178.904	0/0:48:48,0:48:1638:0:0:0,-14.4494,-147.687	0/0:120:120,0:120:4134:0:0:0,-36.1236,-372.245	0/1:12:9,3:9:312:3:108:-6.44852,0,-24.803	0/1:10:5,5:5:176:5:180:-13.4945,0,-13.1747	0/1:33:18,15:18:613:15:540:-38.7955,0,-45.4092	0/0:56:56,0:56:1948:0:0:0,-16.8577,-175.592	0/1:69:28,41:28:968:41:1460:-110.19,0,-66.6604	0/0:91:90,1:90:3107:1:36:0,-23.8107,-276.272	0/1:18:10,8:10:351:8:288:-20.2848,0,-26.5006	0/0:61:61,0:61:2118:0:0:0,-18.3628,-190.589	0/0:49:49,0:49:1719:0:0:0,-14.7505,-154.451	0/0:29:29,0:29:1010:0:0:0,-8.72987,-91.2096	0/1:48:29,19:29:1024:19:684:-45.8061,0,-77.3353	0/1:27:15,11:15:528:11:396:-27.5086,0,-39.6397	0/1:18:11,7:11:396:7:252:-17.2668,0,-30.4692	0/1:27:13,14:13:464:14:504:-36.2202,0,-33.9145	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.542	0/1:81:35,46:35:1220:46:1643:-122.1,0,-85.6827	0/0:115:115,0:115:3938:0:0:0,-34.6184,-354.556	0/1:27:10,17:10:344:17:612:-47.2019,0,-23.1643	0/1:54:25,29:25:872:29:1017:-74.1817,0,-62.527	0/0:43:43,0:43:1516:0:0:0,-12.9443,-136.595	0/0:29:29,0:29:1004:0:0:0,-8.72987,-90.6704	0/1:121:69,52:69:2406:52:1860:-131.073,0,-180.371	0/1:78:34,44:34:1166:44:1576:-118.311,0,-81.7617	0/1:22:10,12:10:360:12:428:-31.5774,0,-26.1216	0/0:116:115,1:115:3951:1:32:0,-31.746,-352.615	0/0:59:59,0:59:2088:0:0:0,-17.7608,-188.177	0/1:45:21,24:21:740:24:860:-63.8564,0,-53.377	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4918	0/1:11:7,4:7:248:4:144:-9.98341,0,-19.3529	0/1:2:1,1:1:36:1:36:-2.98717,0,-2.99621	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.0222	0/1:7:2,5:2:63:5:180:-14.2177,0,-3.87594	0/1:111:55,56:55:1936:56:2008:-146.23,0,-141.093	0/0:56:56,0:56:1967:0:0:0,-16.8577,-177.292	0/0:43:43,0:43:1507:0:0:0,-12.9443,-135.872	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/0:45:45,0:45:1564:0:0:0,-13.5463,-140.819	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:66:24,42:24:835:42:1492:-114.222,0,-55.5883	0/1:29:13,16:13:456:16:567:-40.9513,0,-32.6331	0/1:33:17,16:17:603:16:572:-40.756,0,-44.6508	0/1:32:12,20:12:420:20:716:-55.1042,0,-28.4992	0/1:29:13,16:13:468:16:576:-43.3027,0,-33.7298	0/0:70:69,1:69:2406:1:36:0,-17.489,-213.215	0/0:39:39,0:39:1345:0:0:0,-11.7402,-121.188	0/1:56:23,33:23:800:33:1188:-89.6745,0,-55.4608	0/0:67:67,0:67:2320:0:0:0,-20.169,-209.061	0/1:7:4,3:4:140:3:108:-7.92533,0,-10.835	0/0:58:57,0:57:2012:0:0:0,-17.1587,-181.105	0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7716	.:.:.:.:.:.:.:.	0/0:48:48,0:48:1692:0:0:0,-14.4494,-152.557	0/1:24:10,14:10:348:14:499:-37.2036,0,-24.4166	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:4,4:4:129:4:144:-10.9017,0,-9.51942	0/1:45:26,19:26:900:19:676:-46.8822,0,-67.7677	0/0:44:44,0:44:1529:0:0:0,-13.2453,-137.518	0/1:3:1,2:1:36:2:72:-5.9287,0,-2.69518	0/1:103:48,55:48:1708:55:1972:-146.008,0,-122.993	0/0:72:70,2:70:2451:2:72:0,-14.8664,-214.035	0/1:36:18,18:18:632:18:648:-47.7316,0,-46.3681	0/0:38:38,0:38:1325:0:0:0,-11.4391,-119.505	0/1:107:52,55:52:1836:55:1963:-143.366,0,-133.204	0/0:61:60,1:60:2070:1:36:0,-14.7798,-182.944	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2687	0/0:26:26,0:26:895:0:0:0,-7.82678,-80.851	0/1:25:10,15:10:352:15:540:-41.1131,0,-24.4924	0/1:5:4,1:4:140:1:36:-2.0779,0,-11.4394	0/0:53:53,0:53:1816:0:0:0,-15.9546,-163.71	0/1:49:7,42:7:244:42:1499:-119.059,0,-7.54896	0/0:84:84,0:84:2871:0:0:0,-25.2865,-258.622	0/0:72:72,0:72:2520:0:0:0,-21.6742,-227.013	0/1:20:7,13:7:248:13:464:-35.8851,0,-16.6148	0/0:103:102,1:102:3604:1:36:0,-27.4169,-320.893	0/1:4:2,2:2:68:2:72:-5.61541,0,-5.25359	0/1:31:17,14:17:604:14:504:-36.3014,0,-45.3494	0/1:60:34,26:34:1187:26:924:-65.1563,0,-88.9806	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.369	0/0:28:28,0:28:988:0:0:0,-8.42884,-89.2102	0/0:31:31,0:31:1053:0:0:0,-9.33193,-95.0069	0/1:32:9,23:9:308:23:824:-63.1954,0,-18.4025	0/0:88:88,0:88:3064:0:0:0,-26.4906,-275.718	0/1:23:8,15:8:288:15:536:-40.5965,0,-19.2974	0/1:40:13,27:13:460:27:968:-74.2037,0,-29.6794	0/0:39:39,0:39:1347:0:0:0,-11.7402,-121.517	0/1:8:5,3:5:176:3:108:-7.10301,0,-13.7768	0/1:48:22,26:22:780:26:936:-69.2485,0,-55.7449	0/1:58:15,43:15:536:43:1540:-117.922,0,-31.1019	0/0:73:73,0:73:2548:0:0:0,-21.9752,-229.519	0/0:85:85,0:85:3020:0:0:0,-25.5875,-271.594
chr09	20975082	.	T	C	43844.9	PASS	AB=0.455541;ABP=104.959;AC=47;AF=0.25;AN=188;AO=2720;CIGAR=1X;DP=13277;DPB=13277;DPRA=1.1028;EPP=5909.42;EPPR=22914.2;GTI=3;LEN=1;MEANALT=1.03636;MQM=59.55;MQMR=59.9184;NS=94;NUMALT=1;ODDS=6.45317;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97156;QR=377045;RO=10555;RPL=0;RPP=5909.42;RPPR=22879.5;RPR=2720;RUN=1;SAF=0;SAP=5909.42;SAR=2720;SRF=4;SRP=22888.2;SRR=10551;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:233:232,1:232:8264:1:30:0,-67.1443,-740.755	0/0:143:143,0:143:5125:0:0:0,-43.0473,-459.94	0/0:371:370,1:370:13198:1:36:0,-108.084,-1183.48	0/1:74:36,38:36:1296:38:1364:-100.78,0,-94.6677	0/1:39:23,16:23:813:16:576:-40.4266,0,-61.7489	0/1:164:118,46:118:4225:46:1629:-97.3564,0,-331.045	0/0:320:320,0:320:11444:0:0:0,-96.3296,-1029.82	0/1:129:89,40:89:3177:40:1421:-89.3159,0,-245.87	0/0:220:220,0:220:7851:0:0:0,-66.2266,-706.588	0/1:61:36,25:36:1273:25:900:-62.952,0,-96.5081	0/0:105:105,0:105:3732:0:0:0,-31.6081,-336.081	0/0:90:90,0:90:3203:0:0:0,-27.0927,-288.491	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:98:46,52:46:1656:52:1860:-138.172,0,-119.827	0/1:98:46,52:46:1618:52:1859:-138.079,0,-116.404	0/1:95:51,44:51:1828:44:1567:-112.707,0,-136.203	0/1:98:56,42:56:2004:42:1504:-106.121,0,-151.133	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:332:162,169:162:5804:169:6034:-443.116,0,-422.627	0/0:252:252,0:252:8994:0:0:0,-75.8596,-809.345	0/1:110:43,67:43:1540:67:2387:-181.966,0,-105.78	0/1:154:85,69:85:3056:69:2460:-175.032,0,-228.905	0/0:267:267,0:267:9470:0:0:0,-80.375,-852.249	0/0:75:75,0:75:2654:0:0:0,-22.5772,-239.104	0/1:510:286,224:286:10222:224:7986:-565.009,0,-766.381	0/1:244:125,119:125:4477:119:4267:-310.733,0,-328.193	0/1:64:29,35:29:1040:35:1256:-94.0701,0,-74.6484	0/0:379:379,0:379:13580:0:0:0,-114.09,-1221.98	0/0:203:203,0:203:7254:0:0:0,-61.1091,-652.911	0/1:222:137,85:137:4911:85:3052:-207.892,0,-374.754	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:11:9,2:9:309:2:72:-3.52539,0,-24.8294	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.931	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:313:160,153:160:5752:153:5481:-399.169,0,-423.569	0/0:206:206,0:206:7373:0:0:0,-62.0122,-663.263	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.438	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:226:224,2:224:8021:2:72:0,-61.1961,-715.071	0/0:45:45,0:45:1593:0:0:0,-13.5463,-143.658	0/1:185:131,54:131:4674:54:1936:-118.7,0,-364.625	0/1:142:73,69:73:2612:69:2446:-176.842,0,-192.582	0/1:115:68,47:68:2436:47:1685:-117.295,0,-184.877	0/1:96:59,37:59:2101:37:1320:-90.1885,0,-160.459	0/1:145:91,54:91:3232:54:1924:-129.684,0,-247.452	0/0:270:270,0:270:9632:0:0:0,-81.2781,-866.825	0/0:226:226,0:226:8084:0:0:0,-68.0328,-727.549	0/1:205:108,97:108:3856:97:3488:-252.4,0,-285.526	0/0:215:215,0:215:7663:0:0:0,-64.7214,-689.704	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:150:150,0:150:5369:0:0:0,-45.1545,-483.339	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:170:170,0:170:6053:0:0:0,-51.1751,-544.873	0/1:68:50,18:50:1788:18:648:-38.1818,0,-140.732	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:21:11,10:11:381:10:360:-26.418,0,-28.2986	0/1:80:47,33:47:1671:33:1188:-83.1462,0,-126.277	0/0:127:127,0:127:4568:0:0:0,-38.2308,-411.283	0/1:5:3,2:3:99:2:72:-5.33157,0,-7.73143	0/1:343:189,153:189:6773:153:5465:-388.664,0,-505.101	0/0:372:367,5:367:13095:5:180:0,-95.4311,-1161.76	0/1:113:57,56:57:2044:56:2004:-146.594,0,-150.215	0/0:126:126,0:126:4498:0:0:0,-37.9298,-404.986	0/1:292:150,142:150:5320:142:5014:-363.416,0,-391.006	0/0:168:167,1:167:5969:1:36:0,-46.9748,-533.717	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:118:118,0:118:4239:0:0:0,-35.5215,-381.67	0/1:110:49,61:49:1760:61:2174:-162.787,0,-125.571	0/1:28:23,5:23:801:5:180:-8.12322,0,-63.9663	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:124:53,71:53:1900:71:2552:-192.593,0,-133.95	0/0:236:236,0:236:8444:0:0:0,-71.0431,-759.622	0/0:234:234,0:234:8385:0:0:0,-70.441,-754.642	0/1:127:73,54:73:2608:54:1936:-136.239,0,-196.738	0/0:156:155,1:155:5522:1:36:0,-43.3624,-493.401	0/1:29:13,16:13:468:16:572:-43.0754,0,-33.7298	0/1:165:95,70:95:3408:70:2516:-176.994,0,-257.264	0/1:164:83,81:83:2972:81:2896:-211.483,0,-218.343	0/0:348:347,1:347:12393:1:36:0,-101.16,-1111.44	0/0:152:152,0:152:5405:0:0:0,-45.7566,-486.3	0/0:102:102,0:102:3634:0:0:0,-30.7051,-327.249	0/1:161:77,84:77:2760:84:2981:-220.008,0,-200.175	0/0:269:266,3:266:9489:3:100:0,-71.6466,-844.635	0/1:52:25,27:25:900:27:963:-71.33,0,-65.6675	0/1:101:66,35:66:2356:35:1252:-82.5647,0,-181.895	0/0:95:95,0:95:3420:0:0:0,-28.5978,-308.012	0/1:34:20,14:20:701:14:504:-35.4584,0,-53.1767	0/1:73:35,38:35:1233:38:1340:-98.9129,0,-89.2106	0/1:112:33,79:33:1150:79:2819:-220.213,0,-70.0866	0/0:118:118,0:118:4217:0:0:0,-35.5215,-379.709	0/0:133:133,0:133:4746:0:0:0,-40.037,-427.296
chr09	21102763	.	GAG	CAG,CAA	102477	PASS	AB=0.545116,0.451628;ABP=41.0222,46.7064;AC=139,47;AF=0.747312,0.252688;AN=186;AO=3787,976;CIGAR=1X2M,1X1M1X;DP=4780;DPB=4780.33;DPRA=0,0.822685;EPP=8226.38,2122.37;EPPR=5.18177;GTI=5;LEN=1,3;MEANALT=1.68817,2.14;MQM=59.6234,53.9191;MQMR=50;NS=93;NUMALT=2;ODDS=0.105903;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=135100,34570;QR=27;RO=1;RPL=3787,976;RPP=8226.38,2122.37;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8226.38,2122.37;SAR=3787,976;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53,0:0:0:53,0:1908,0:-171.989,-15.9546,0,-171.989,-15.9546,-171.989	1/1:32:0,32,0:0:0:32,0:1148,0:-103.613,-9.63296,0,-103.613,-9.63296,-103.613	1/1:85:0,85,0:0:0:85,0:3029,0:-272.636,-25.5876,0,-272.636,-25.5876,-272.636	1/1:105:0,105,0:0:0:105,0:3745,0:-337.243,-31.6082,0,-337.243,-31.6082,-337.243	1/2:31:0,18,13:0:0:18,13:644,455:-89.6772,-37.2366,-31.818,-52.7928,0,-48.8795	1/2:33:0,17,16:0:0:17,16:597,567:-94.9926,-46.4061,-41.2886,-48.9386,0,-44.1221	1/2:36:0,17,19:0:0:17,19:604,671:-104.07,-54.8544,-49.7369,-49.5698,0,-43.8502	1/1:82:0,82,0:0:0:82,0:2928,0:-263.724,-24.6845,0,-263.724,-24.6845,-263.724	1/2:82:0,42,40:0:0:42,40:1500,1410:-236.59,-114.3,-101.657,-122.643,0,-110.602	1/1:42:1,41,0:1:27:41,0:1468,0:-129.715,-9.94543,0,-130.016,-12.3422,-132.141	1/2:28:0,9,19:0:0:9,19:324,680:-81.4861,-55.052,-52.3427,-26.7919,0,-21.0723	1/1:65:0,65,0:0:0:65,0:2327,0:-209.645,-19.567,0,-209.645,-19.567,-209.645	1/1:46:0,45,0:0:0:45,0:1620,0:-145.829,-13.5464,0,-145.829,-13.5464,-145.829	1/1:60:0,60,0:0:0:60,0:2140,0:-192.857,-18.0618,0,-192.857,-18.0618,-192.857	1/2:33:0,25,8:0:0:25,8:900,286:-97.0967,-23.6592,-16.1334,-73.7953,0,-71.387	1/2:36:0,19,17:0:0:19,17:684,584:-103.376,-47.5553,-41.8357,-56.1708,0,-51.0532	1/2:22:0,13,9:0:0:13,9:468,324:-64.9094,-26.7224,-22.809,-38.5463,0,-35.837	1/2:26:0,14,12:0:0:14,12:504,430:-76.2716,-35.1454,-30.931,-41.4837,0,-37.8713	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/2:77:0,43,34:0:0:43,34:1525,1205:-222.505,-98.2616,-85.3173,-124.597,0,-114.362	1/1:86:0,85,0:0:0:85,0:3025,0:-271.949,-25.5876,0,-271.949,-25.5876,-271.949	1/2:77:0,43,34:0:0:43,34:1533,1215:-224.24,-99.2797,-86.3354,-125.317,0,-115.082	1/2:63:0,38,24:0:0:38,24:1345,864:-180.06,-70.509,-59.0698,-109.701,0,-102.476	1/1:26:0,26,0:0:0:26,0:924,0:-83.4671,-7.82678,0,-83.4671,-7.82678,-83.4671	1/1:58:0,58,0:0:0:58,0:2041,0:-183.937,-17.4597,0,-183.937,-17.4597,-183.937	1/2:141:0,83,57:0:0:83,57:2962,2018:-405.455,-164.287,-139.301,-241.271,0,-224.112	1/2:103:0,62,39:0:0:62,39:2205,1365:-290.639,-110.944,-92.2801,-179.75,0,-168.01	1/2:7:0,5,2:0:0:5,2:176,72:-20.544,-6.22122,-4.71607,-14.6799,0,-14.0778	1/1:120:0,120,0:0:0:120,0:4278,0:-385.18,-36.1236,0,-385.18,-36.1236,-385.18	1/1:72:0,72,0:0:0:72,0:2580,0:-232.392,-21.6742,0,-232.392,-21.6742,-232.392	1/2:60:0,30,30:0:0:30,30:1070,1075:-175.155,-87.932,-78.9011,-87.5802,0,-78.5493	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:7:0,4,3:0:0:4,3:144,106:-20.7272,-8.97347,-7.76935,-12.1095,0,-11.2064	1/2:6:0,5,1:0:0:5,1:180,36:-17.976,-3.2882,-1.78305,-15.0469,0,-14.7459	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:134:0,88,46:0:0:88,46:3110,1639:-386.998,-133.884,-107.393,-253.469,0,-239.621	1/1:101:0,101,0:0:0:101,0:3628,0:-326.71,-30.404,0,-326.71,-30.404,-326.71	1/1:40:0,40,0:0:0:40,0:1424,0:-128.432,-12.0412,0,-128.432,-12.0412,-128.432	.:.:.:.:.:.:.:.	1/1:62:0,61,0:0:0:61,0:2158,0:-194.104,-18.3628,0,-194.104,-18.3628,-194.104	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/2:104:0,45,59:0:0:45,59:1578,2057:-295.405,-167.124,-153.577,-128.63,0,-110.87	1/2:32:0,22,10:0:0:22,10:788,360:-93.9711,-29.7104,-23.0877,-64.6198,0,-61.6095	1/2:41:0,18,23:0:0:18,23:640,813:-118.586,-66.4296,-61.0111,-52.5108,0,-45.5871	1/2:61:0,39,22:0:0:39,22:1392,783:-177.55,-64.0971,-52.3569,-113.809,0,-107.186	1/2:62:0,26,36:0:0:26,36:921,1285:-179.511,-104.487,-96.6607,-75.3784,0,-64.5413	1/1:113:0,113,0:0:0:113,0:4050,0:-364.413,-34.0164,0,-364.413,-34.0164,-364.413	1/1:61:0,61,0:0:0:61,0:2165,0:-195.1,-18.3628,0,-195.1,-18.3628,-195.1	1/2:42:0,22,20:0:0:22,20:784,709:-121.93,-58.069,-51.4463,-64.2162,0,-58.1956	1/1:35:0,35,0:0:0:35,0:1260,0:-113.572,-10.5361,0,-113.572,-10.5361,-113.572	1/2:3:0,2,1:0:0:2,1:72,36:-9.16966,-3.29465,-2.69259,-6.23466,0,-5.93363	1/1:110:0,110,0:0:0:110,0:3931,0:-353.974,-33.1133,0,-353.974,-33.1133,-353.974	1/1:37:0,37,0:0:0:37,0:1324,0:-119.453,-11.1381,0,-119.453,-11.1381,-119.453	1/2:6:0,3,3:0:0:3,3:108,108:-17.9595,-9.14675,-8.24366,-9.17208,0,-8.26899	1/1:96:0,95,0:0:0:95,0:3400,0:-305.737,-28.5979,0,-305.737,-28.5979,-305.737	1/2:14:0,6,8:0:0:6,8:216,284:-41.0205,-23.3933,-21.5871,-17.9843,0,-15.5761	1/2:3:0,1,2:0:0:1,2:36,72:-9.1702,-6.23275,-5.93172,-3.29724,0,-2.69518	1/2:6:0,3,3:0:0:3,3:108,108:-17.9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chr09	21175575	.	T	C	29699.9	PASS	AB=0.491103;ABP=3.58987;AC=138;AF=0.75;AN=184;AO=1412;CIGAR=1X;DP=1851;DPB=1851;DPRA=10.2611;EPP=3025.85;EPPR=930.407;GTI=1;LEN=1;MEANALT=1;MQM=59.9186;MQMR=59.4077;NS=92;NUMALT=1;ODDS=1.16054;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50386;QR=15718;RO=439;RPL=5;RPP=3025.85;RPPR=930.407;RPR=1407;RUN=1;SAF=0;SAP=3069.13;SAR=1412;SRF=0;SRP=956.287;SRR=439;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:14:0,14:0:0:14:504:-45.6899,-4.21442,0	0/1:9:5,4:5:180:4:138:-10.0505,0,-13.8428	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/1:7:2,5:2:72:5:180:-14.4308,0,-4.72951	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	0/1:22:11,11:11:396:11:396:-29.3478,0,-29.3519	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	1/1:29:0,29:0:0:29:1014:-91.5663,-8.72987,0	1/1:23:0,23:0:0:23:811:-73.31,-6.92369,0	1/1:20:0,20:0:0:20:703:-63.5927,-6.0206,0	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0353	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8888	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.4894	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:32:0,32:0:0:32:1148:-103.625,-9.63296,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:17:13,4:13:468:4:135:-7.365,0,-37.3421	0/1:30:14,16:14:504:16:568:-42.421,0,-36.6524	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:24:0,24:0:0:24:858:-77.5412,-7.22472,0	0/1:77:38,39:38:1364:39:1403:-103.385,0,-99.8814	0/1:37:18,19:18:633:19:684:-50.7522,0,-46.1349	0/1:10:5,5:5:180:5:171:-12.7152,0,-13.5418	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:24:6,18:6:216:18:640:-50.7046,0,-12.5658	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:57:31,26:31:1108:26:928:-66.6795,0,-82.8192	1/1:44:0,44:0:0:44:1553:-140.055,-13.2453,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:32:17,15:17:608:15:532:-38.5801,0,-45.3998	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:20:4,16:4:144:16:567:-45.3401,0,-7.29302	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9545	1/1:33:0,33:0:0:33:1176:-106.145,-9.93399,0	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:31:18,13:18:636:13:464:-32.7656,0,-48.2251	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6124	1/1:10:0,10:0:0:10:354:-32.1995,-3.0103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0663	1/1:33:1,32:1:36:32:1143:-99.5804,-6.33572,0	.:.:.:.:.:.:.:.	0/1:25:14,11:14:504:11:392:-28.0939,0,-38.1677	1/1:36:2,34:2:72:34:1220:-103.27,-4.00036,0	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:37:18,19:18:648:19:680:-50.3911,0,-47.5129	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0508	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:47:0,47:0:0:47:1682:-151.667,-14.1484,0	0/1:33:10,23:10:360:23:816:-63.8277,0,-22.8021	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:29:13,16:13:453:16:576:-43.4451,0,-32.3621	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:16:13,3:13:464:3:108:-5.25869,0,-37.2764	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1359	1/1:44:3,41:3:108:41:1476:-123.061,-3.17015,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:10:0,10:0:0:10:336:-30.5632,-3.0103,0	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.4991	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	1/1:17:0,17:0:0:17:594:-53.7558,-5.11751,0	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:33:19,14:19:684:14:500:-35.4022,0,-51.9517	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.598	1/1:19:0,19:0:0:19:672:-60.7185,-5.71957,0	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0
chr09	21175594	.	CATC	CATA	6590.78	PASS	AB=0.494145;ABP=3.26457;AC=46;AF=0.25;AN=184;AO=431;CIGAR=3M1X;DP=1897;DPB=1897;DPRA=1.01035;EPP=938.915;EPPR=3164.67;GTI=1;LEN=1;MEANALT=1.10638;MQM=59.5684;MQMR=59.9066;NS=92;NUMALT=1;ODDS=1.28955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=15368;QR=51511;RO=1456;RPL=431;RPP=938.915;RPPR=3164.67;RPR=0;RUN=1;SAF=0;SAP=938.915;SAR=431;SRF=0;SRP=3164.67;SRR=1456;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2419	0/0:26:26,0:26:908:0:0:0,-7.82678,-82.0348	0/0:14:14,0:14:501:0:0:0,-4.21442,-45.4204	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:7:5,2:5:170:2:72:-4.72951,0,-13.5249	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.581	0/1:23:12,11:12:401:11:392:-28.6881,0,-29.4758	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1173	0/1:10:4,6:4:143:6:216:-16.7802,0,-10.2111	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9115	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5996	0/0:22:22,0:22:778:0:0:0,-6.62266,-70.3414	0/1:24:10,14:10:354:14:504:-38.4596,0,-24.9748	0/1:12:3,9:3:108:9:320:-25.5253,0,-6.46281	0/1:7:2,5:2:72:5:176:-14.0599,0,-4.72951	0/1:14:6,8:6:208:8:288:-22.053,0,-14.8441	0/0:5:5,0:5:179:0:0:0,-1.50515,-16.4604	0/0:32:32,0:32:1128:0:0:0,-9.63296,-101.825	0/0:39:39,0:39:1368:0:0:0,-11.7402,-123.416	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:31:17,14:17:607:14:504:-36.3514,0,-45.63	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5643	0/0:25:24,0:24:851:0:0:0,-7.22472,-76.5507	0/1:77:37,40:37:1292:40:1398:-102.934,0,-93.3996	0/1:38:19,18:19:677:18:648:-47.137,0,-49.7609	0/1:10:5,5:5:179:5:176:-13.1747,0,-13.4501	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/0:25:24,0:24:844:0:0:0,-7.22472,-75.9182	0/1:24:18,6:18:645:6:216:-12.5658,0,-51.1564	0/0:8:8,0:8:285:0:0:0,-2.40824,-25.9946	0/1:9:5,4:5:167:4:144:-10.6043,0,-12.6493	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:57:27,30:27:963:30:1072:-79.5392,0,-69.8278	0/0:45:44,0:44:1567:0:0:0,-13.2453,-140.962	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:18:18,0:18:643:0:0:0,-5.41854,-58.2004	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:33:16,14:16:570:14:489:-34.9677,0,-42.2654	0/1:17:10,7:10:354:7:248:-17.5467,0,-27.0817	0/1:15:7,8:7:250:8:288:-21.752,0,-18.3313	0/1:22:18,4:18:619:4:144:-6.69096,0,-49.4091	0/1:19:8,11:8:285:11:388:-29.5345,0,-20.275	0/0:34:34,0:34:1194:0:0:0,-10.235,-107.764	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.769	0/1:30:13,17:13:459:17:604:-45.6555,0,-32.6139	0/0:14:14,0:14:487:0:0:0,-4.21442,-43.7276	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:13:13,0:13:466:0:0:0,-3.91339,-42.2787	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3238	0/1:8:1,7:1:34:7:248:-20.2477,0,-0.990671	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6204	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3585	1/1:3:0,2:0:0:2:72:-6.47689,-0.60206,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:20:14,6:14:502:6:216:-13.7652,0,-39.4967	0/0:35:34,1:34:1193:1:36:0,-6.93777,-104.075	.:.:.:.:.:.:.:.	0/1:25:11,14:11:388:14:500:-37.8086,0,-27.7309	0/0:36:34,2:34:1215:2:72:0,-4.00036,-102.82	0/1:16:9,7:9:323:7:252:-18.2125,0,-24.5986	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6203	0/1:36:19,17:19:664:17:597:-43.219,0,-49.246	0/0:40:40,0:40:1400:0:0:0,-12.0412,-126.296	0/0:8:8,0:8:287:0:0:0,-2.40824,-26.1765	0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3686	0/1:24:13,11:13:460:11:396:-28.7498,0,-34.5106	0/1:10:5,5:5:178:5:180:-13.5418,0,-13.3584	0/0:48:48,0:48:1691:0:0:0,-14.4494,-152.475	0/1:35:26,9:26:914:9:316:-18.2346,0,-72.0393	0/0:24:24,0:24:837:0:0:0,-7.22472,-75.6456	0/0:15:15,0:15:539:0:0:0,-4.51545,-48.8462	0/1:27:16,11:16:575:11:396:-27.8549,0,-43.9569	0/0:14:14,0:14:501:0:0:0,-4.21442,-45.4268	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:17:3,14:3:108:14:504:-40.576,0,-4.95766	0/1:30:14,15:14:494:15:540:-39.8477,0,-35.705	0/0:45:42,3:42:1473:3:108:0,-3.47118,-122.788	0/0:36:36,0:36:1293:0:0:0,-10.8371,-116.674	0/0:10:10,0:10:350:0:0:0,-3.0103,-31.8365	0/1:11:5,6:5:180:6:208:-15.7478,0,-13.2407	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0324	0/1:6:2,3:2:72:3:108:-8.21087,0,-4.97235	0/1:17:9,8:9:321:8:288:-21.1499,0,-24.1159	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.3467	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:34:15,19:15:539:19:680:-51.2895,0,-38.6112	0/1:9:5,4:5:180:4:144:-10.598,0,-13.8428	0/0:20:20,0:20:702:0:0:0,-6.0206,-63.4725	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.459
chr09	21175922	.	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chr09	21365550	.	C	T	121118	PASS	AB=0.455825;ABP=59.6058;AC=139;AF=0.739362;AN=188;AO=5685;CIGAR=1X;DP=7519;DPB=7519;DPRA=0;EPP=12347.8;EPPR=3976.8;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9953;MQMR=60;NS=94;NUMALT=1;ODDS=0.913808;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203766;QR=65572;RO=1830;RPL=0;RPP=12347.8;RPPR=3976.8;RPR=5685;RUN=1;SAF=5685;SAP=12347.8;SAR=0;SRF=1830;SRP=3976.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:140:0,140:0:0:140:5013:-451.314,-42.1442,0	1/1:52:1,51:1:36:51:1832:-161.563,-12.0553,0	1/1:145:0,145:0:0:145:5196:-467.778,-43.6494,0	0/1:20:18,2:18:640:2:72:-0.816123,0,-51.9087	0/1:33:19,14:19:680:14:504:-35.7641,0,-51.5952	0/1:105:62,43:62:2232:43:1529:-106.293,0,-169.535	0/1:124:68,56:68:2436:56:2012:-144.025,0,-182.168	0/1:45:25,20:25:896:20:716:-51.2214,0,-67.414	1/1:121:0,120:0:0:120:4305:-387.414,-36.1236,0	0/1:44:28,16:28:1008:16:576:-38.9297,0,-77.791	1/1:71:0,71:0:0:71:2537:-228.579,-21.3731,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	1/1:74:0,74:0:0:74:2658:-239.465,-22.2762,0	0/1:75:37,38:37:1332:38:1368:-100.844,0,-97.6051	0/1:54:25,29:25:900:29:1044:-78.0192,0,-65.0654	0/1:77:34,43:34:1224:43:1544:-116.074,0,-87.2877	0/1:67:36,31:36:1288:31:1116:-80.5827,0,-96.0546	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:122:0,122:0:0:122:4384:-394.732,-36.7257,0	1/1:126:0,126:0:0:126:4528:-407.685,-37.9298,0	0/1:79:56,22:56:1996:22:792:-47.9088,0,-156.221	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:330:180,150:180:6448:150:5381:-385.009,0,-481.066	0/1:148:80,68:80:2856:68:2429:-174.311,0,-212.726	0/1:46:24,22:24:864:22:787:-57.3071,0,-64.2352	1/1:140:0,140:0:0:140:5017:-451.674,-42.1442,0	1/1:159:0,159:0:0:159:5720:-514.914,-47.8638,0	0/1:71:41,30:41:1468:30:1076:-75.7797,0,-111.043	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/1:212:127,85:127:4551:85:3043:-210.281,0,-345.937	1/1:175:0,175:0:0:175:6258:-563.314,-52.6803,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:110:2,108:2:72:108:3867:-341.387,-26.2766,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:89:54,35:54:1932:35:1256:-86.5536,0,-147.365	0/1:50:25,25:25:896:25:900:-66.2695,0,-65.9089	0/1:73:31,42:31:1116:42:1508:-114.039,0,-78.7765	0/1:73:44,29:44:1576:29:1014:-69.5923,0,-120.156	0/1:68:38,30:38:1364:30:1072:-76.3215,0,-102.591	1/1:156:2,154:2:72:154:5528:-490.804,-40.124,0	1/1:120:0,120:0:0:120:4301:-387.264,-36.1236,0	0/1:117:55,62:55:1976:62:2232:-165.923,0,-142.894	1/1:157:0,156:0:0:156:5608:-504.628,-46.9607,0	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	1/1:86:0,86:0:0:86:3096:-278.866,-25.8886,0	1/1:52:0,52:0:0:52:1827:-164.705,-15.6536,0	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	1/1:109:0,109:0:0:109:3907:-351.822,-32.8123,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:22:4,18:4:144:18:648:-52.0292,0,-6.69096	0/1:43:19,24:19:684:24:860:-64.7775,0,-48.946	1/1:117:0,117:0:0:117:4196:-377.821,-35.2205,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:165:86,78:86:3076:78:2804:-203.018,0,-227.488	1/1:289:6,283:6:216:283:10110:-890.038,-67.2072,0	0/1:82:40,42:40:1436:42:1512:-111.69,0,-104.853	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:126:67,59:67:2395:59:2120:-153.139,0,-177.877	1/1:112:2,110:2:72:110:3933:-347.324,-26.8786,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	0/1:96:58,38:58:2088:38:1368:-94.522,0,-159.291	0/1:27:17,10:17:612:10:356:-24.2534,0,-47.2856	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:91:35,56:35:1248:56:1993:-152.248,0,-85.2311	1/1:91:0,91:0:0:91:3230:-290.92,-27.3937,0	1/1:167:2,165:2:68:165:5913:-525.819,-43.8143,0	0/1:41:24,17:24:852:17:593:-41.3525,0,-64.6582	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:98:47,51:47:1680:51:1809:-133.589,0,-121.986	0/1:90:56,34:56:2004:34:1224:-83.3743,0,-153.541	1/1:163:0,163:0:0:163:5852:-526.79,-49.0679,0	1/1:112:0,112:0:0:112:4015:-361.537,-33.7154,0	1/1:60:0,60:0:0:60:2147:-193.497,-18.0618,0	0/1:82:47,35:47:1683:35:1252:-88.3006,0,-127.072	1/1:119:0,119:0:0:119:4265:-384.026,-35.8226,0	0/1:29:13,16:13:464:16:576:-43.4451,0,-33.3676	0/1:84:44,40:44:1576:40:1439:-104.521,0,-116.845	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3053	0/1:69:39,30:39:1404:30:1061:-75.0283,0,-105.888	0/1:51:35,16:35:1251:16:576:-36.8225,0,-97.5417	1/1:83:0,83:0:0:83:2984:-268.791,-24.9855,0	1/1:112:0,112:0:0:112:4028:-362.704,-33.7154,0
chr09	21382756	.	C	T	91575.6	PASS	AB=0.533554;ABP=32.5919;AC=135;AF=0.725806;AN=186;AO=4925;CIGAR=1X;DP=6348;DPB=6348;DPRA=68.9891;EPP=10697.5;EPPR=3086.5;GTI=1;LEN=1;MEANALT=1.02174;MQM=36.5815;MQMR=50.2944;NS=93;NUMALT=1;ODDS=1.73085;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175897;QR=50915;RO=1420;RPL=0;RPP=10697.5;RPPR=3086.5;RPR=4925;RUN=1;SAF=4925;SAP=10697.5;SAR=0;SRF=1420;SRP=3086.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1500:-121.598,-12.6433,0	1/1:60:0,60:0:0:60:2156:-174.948,-18.0618,0	1/1:111:0,111:0:0:111:3970:-321.623,-33.4143,0	1/1:117:0,117:0:0:117:4208:-347.253,-35.2205,0	0/1:56:18,38:18:644:38:1349:-96.5962,0,-41.2845	0/1:25:18,7:18:644:7:252:-12.64,0,-50.3863	0/1:101:50,51:50:1769:51:1802:-119.768,0,-127.989	0/1:94:44,50:44:1584:50:1796:-119.105,0,-113.57	0/1:86:42,44:42:1508:44:1580:-104.44,0,-109.102	1/1:64:0,64:0:0:64:2296:-190.902,-19.2659,0	0/1:47:32,15:32:1148:15:540:-31.3592,0,-88.778	1/1:108:0,108:0:0:108:3880:-316.823,-32.5112,0	1/1:78:0,78:0:0:78:2771:-224.63,-23.4803,0	1/1:62:0,62:0:0:62:2217:-187.66,-18.6639,0	0/1:61:26,35:26:936:35:1260:-87.0813,0,-65.922	0/1:63:25,38:25:900:38:1330:-94.3161,0,-62.1517	0/1:33:17,16:17:608:16:576:-37.498,0,-44.8128	0/1:19:8,11:8:284:11:381:-25.1176,0,-20.0193	1/1:26:0,26:0:0:26:936:-76.6157,-7.82678,0	1/1:108:0,108:0:0:108:3880:-323.345,-32.5112,0	1/1:113:0,113:0:0:113:4025:-335.889,-34.0164,0	0/1:76:46,30:46:1652:30:1065:-67.2442,0,-125.486	0/1:114:59,55:59:2120:55:1980:-129.523,0,-155.616	1/1:32:0,32:0:0:32:1129:-96.0651,-9.63296,0	1/1:68:0,68:0:0:68:2413:-203.467,-20.47,0	0/1:172:80,92:80:2872:92:3285:-225.63,0,-206.119	0/1:204:86,118:86:3076:118:4191:-290.888,0,-214.472	0/1:20:7,13:7:244:13:468:-33.7135,0,-15.8374	1/1:163:0,163:0:0:163:5828:-489.292,-49.0679,0	1/1:93:0,93:0:0:93:3317:-279.583,-27.9958,0	0/1:48:17,29:17:612:29:1044:-73.4964,0,-41.0131	1/1:8:0,8:0:0:8:288:-24.6487,-2.40824,0	0/1:15:4,11:4:144:11:396:-29.3605,0,-8.64006	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-9.23727,-0.90309,0	0/1:18:11,7:11:392:7:237:-14.4778,0,-29.4866	0/1:130:58,72:58:2088:72:2554:-175.973,0,-148.396	1/1:86:0,86:0:0:86:3031:-257.052,-25.8886,0	1/1:49:0,49:0:0:49:1749:-141.952,-14.7505,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/1:91:48,43:48:1724:43:1548:-103.885,0,-127.637	1/1:24:1,23:1:36:23:820:-64.6197,-3.63549,0	0/1:98:36,62:36:1292:62:2144:-152.909,0,-85.4248	0/1:34:17,17:17:612:17:612:-38.4078,0,-44.9649	0/1:50:25,25:25:891:25:892:-59.9857,0,-63.8121	0/1:121:55,66:55:1972:66:2364:-160.759,0,-140.403	0/1:84:39,45:39:1404:45:1608:-107.211,0,-100.498	1/1:125:3,122:3:108:122:4353:-352.215,-27.5866,0	1/1:86:0,86:0:0:86:3068:-256.664,-25.8886,0	0/1:82:39,43:39:1404:43:1543:-100.52,0,-101.404	1/1:44:0,44:0:0:44:1584:-130.822,-13.2453,0	0/1:9:3,6:3:108:6:216:-15.6945,0,-7.33288	1/1:70:0,70:0:0:70:2520:-206.202,-21.0721,0	1/1:61:0,61:0:0:61:2154:-181.047,-18.3628,0	0/1:12:9,3:9:320:3:108:-5.41696,0,-24.4938	1/1:107:0,107:0:0:107:3790:-317.841,-32.2102,0	0/1:50:22,28:22:792:28:989:-68.3804,0,-56.2852	0/1:7:4,3:4:144:3:104:-7.05297,0,-11.1729	0/1:21:9,12:9:320:12:432:-30.6032,0,-22.5678	0/1:49:28,21:28:1008:21:741:-48.3133,0,-75.972	1/1:86:0,86:0:0:86:3092:-256.937,-25.8886,0	0/1:15:9,6:9:324:6:216:-13.621,0,-24.6747	0/1:60:34,26:34:1220:26:936:-60.7601,0,-91.5901	1/1:115:0,115:0:0:115:4098:-341.651,-34.6185,0	0/1:51:27,24:27:968:24:864:-58.1584,0,-71.7208	1/1:71:0,71:0:0:71:2544:-211.489,-21.3731,0	0/1:108:40,68:40:1432:68:2436:-169.738,0,-95.864	1/1:143:1,142:1:36:142:5085:-419.705,-39.4608,0	1/1:46:1,45:1:36:45:1616:-131.353,-10.2582,0	1/1:54:0,54:0:0:54:1944:-158.904,-16.2556,0	0/1:33:15,18:15:540:18:648:-42.9538,0,-38.4549	0/1:17:12,5:12:432:5:180:-10.2748,0,-33.9776	1/1:128:0,127:0:0:127:4492:-367.354,-38.2308,0	0/1:77:29,48:29:1040:48:1698:-115.846,0,-70.0826	1/1:99:0,99:0:0:99:3556:-299.231,-29.802,0	1/1:120:0,120:0:0:120:4304:-359.015,-36.1236,0	0/1:75:27,48:27:968:48:1724:-118.604,0,-64.3298	1/1:57:0,57:0:0:57:2048:-166.764,-17.1587,0	0/1:25:13,12:13:464:12:432:-27.8068,0,-33.5744	0/1:69:32,37:32:1144:37:1332:-92.3748,0,-82.0647	0/1:79:36,43:36:1288:43:1495:-99.5012,0,-91.6302	1/1:129:2,127:2:72:127:4560:-374.625,-32.0092,0	1/1:27:0,27:0:0:27:968:-80.0316,-8.12781,0	1/1:68:1,67:1:36:67:2389:-195.988,-16.8786,0	0/1:31:13,18:13:468:18:644:-44.4841,0,-32.7729	1/1:108:1,107:1:36:107:3848:-314.903,-28.9248,0	0/1:16:6,10:6:216:10:360:-25.1033,0,-14.8448	0/1:57:22,35:22:783:35:1248:-83.3654,0,-53.2228	1/1:72:0,72:0:0:72:2592:-209.779,-21.6742,0	0/1:62:28,34:28:1004:34:1212:-83.2606,0,-71.7241	0/1:84:35,49:35:1248:49:1737:-120.144,0,-86.625	0/1:76:49,27:49:1764:27:957:-57.6118,0,-135.517	1/1:4:0,4:0:0:4:144:-12.3807,-1.20412,0	1/1:87:0,87:0:0:87:3120:-260.324,-26.1896,0
chr09	21422215	.	TGAA	AGAG,TGAG	178201	PASS	AB=0.477406,0.518486;ABP=18.1214,13.126;AC=136,50;AF=0.731183,0.268817;AN=186;AO=4796,1776;CIGAR=1X2M1X,3M1X;DP=6597;DPB=6598.25;DPRA=0,1.14066;EPP=8.29138,3.71456;EPPR=0;GTI=0;LEN=4,1;MEANALT=1.86022,2.26316;MQM=59.9304,59.9285;MQMR=0;NS=93;NUMALT=2;ODDS=2.09183;PAIRED=0,0;PAIREDR=0;PAO=6,0;PQA=204,0;PQR=0;PRO=0;QA=169051,63338;QR=0;RO=0;RPL=4796,1776;RPP=10417.4,3859.55;RPPR=0;RPR=0,0;RUN=1,1;SAF=2452,900;SAP=8.29138,3.71456;SAR=2344,876;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41,0:0:0:41,0:1425,0:-128.541,-12.3422,0,-128.541,-12.3422,-128.541	1/1:62:0,60,0:0:0:60,0:2117,0:-190.438,-18.0618,0,-190.438,-18.0618,-190.438	1/1:125:0,124,1:0:0:124,1:4312,36:-387.899,-37.3277,0,-384.962,-34.3903,-384.661	1/1:91:0,91,0:0:0:91,0:3204,0:-288.556,-27.3937,0,-288.556,-27.3937,-288.556	1/2:31:0,17,14:0:0:17,14:609,500:-90.7894,-41.1218,-36.0042,-50.0251,0,-45.8107	1/2:39:0,19,20:0:0:19,20:666,716:-112.937,-58.7471,-53.0275,-54.5442,0,-48.5236	1/2:58:0,31,27:0:0:31,27:1094,955:-167.221,-78.137,-68.8051,-89.4376,0,-81.3098	1/2:86:0,40,46:0:0:40,46:1414,1643:-249.469,-134.31,-122.269,-115.514,0,-101.667	1/2:74:0,45,28:0:0:45,28:1553,1008:-208.391,-82.2415,-68.6951,-126.144,0,-117.715	1/1:52:0,52,0:0:0:52,0:1790,0:-161.367,-15.6536,0,-161.367,-15.6536,-161.367	1/2:111:0,45,63:0:0:45,63:1589,2226:-310.67,-181.273,-167.727,-129.39,0,-110.425	1/1:139:0,138,0:0:0:138,0:4855,0:-436.753,-41.5421,0,-436.753,-41.5421,-436.753	1/1:151:0,151,0:0:0:151,0:5369,0:-482.962,-45.4555,0,-482.962,-45.4555,-482.962	1/1:139:0,138,0:0:0:138,0:4902,0:-441.036,-41.5421,0,-441.036,-41.5421,-441.036	1/2:122:0,57,64:0:0:57,64:2026,2287:-351.564,-186.465,-169.307,-165.095,0,-145.829	1/2:118:0,47,71:0:0:47,71:1650,2552:-342.84,-208.557,-194.408,-134.637,0,-113.264	1/2:115:0,59,56:0:0:59,56:2105,1995:-334.563,-162.966,-145.205,-171.953,0,-155.096	1/2:134:0,61,72:0:0:61,72:2157,2580:-386.163,-210.484,-192.122,-175.753,0,-154.079	1/1:75:0,75,0:0:0:75,0:2649,0:-238.657,-22.5773,0,-238.657,-22.5773,-238.657	1/1:61:0,60,0:0:0:60,0:2136,0:-192.169,-18.0618,0,-192.169,-18.0618,-192.169	1/1:102:0,102,0:0:0:102,0:3590,0:-323.312,-30.7051,0,-323.312,-30.7051,-323.312	1/2:26:0,9,17:0:0:9,17:304,608:-74.5679,-49.9345,-47.2252,-24.9779,0,-19.8604	1/2:42:0,24,18:0:0:24,18:855,636:-121.841,-52.1495,-44.9248,-70.0462,0,-64.6276	1/1:40:0,40,0:0:0:40,0:1421,0:-128.186,-12.0412,0,-128.186,-12.0412,-128.186	1/1:34:0,32,1:0:0:32,1:1119,36:-100.658,-9.63296,0,-97.7199,-6.69554,-97.4189	1/2:132:0,63,69:0:0:63,69:2221,2449:-380.729,-199.893,-180.928,-181.19,0,-160.419	1/2:72:0,29,43:0:0:29,43:1014,1540:-208.437,-125.949,-117.219,-82.841,0,-69.8967	1/2:57:0,31,26:0:0:31,26:1101,912:-164.282,-74.5662,-65.2342,-90.068,0,-82.2413	1/1:77:0,77,0:0:0:77,0:2683,0:-241.716,-23.1793,0,-241.716,-23.1793,-241.716	1/1:31:0,31,0:0:0:31,0:1094,0:-98.764,-9.33193,0,-98.764,-9.33193,-98.764	1/2:44:0,23,21:0:0:23,21:806,743:-126.455,-60.8717,-53.948,-65.9355,0,-59.6138	1/1:6:0,6,0:0:0:6,0:215,0:-19.6979,-1.80618,0,-19.6979,-1.80618,-19.6979	1/2:9:0,3,6:0:0:3,6:108,216:-26.7966,-17.9843,-17.0812,-9.17208,0,-7.3659	1/2:3:0,2,1:0:0:2,1:71,36:-9.07908,-3.29724,-2.69518,-6.14,0,-5.83897	1/1:3:0,3,0:0:0:3,0:106,0:-9.88916,-0.90309,0,-9.88916,-0.90309,-9.88916	1/2:11:0,4,7:0:0:4,7:144,248:-32.3087,-20.557,-19.3529,-12.1095,0,-10.0023	1/2:254:0,120,134:0:0:120,134:4201,4773:-731.189,-389.39,-353.267,-342.151,0,-301.813	1/1:31:0,30,0:0:0:30,0:1051,0:-94.5404,-9.0309,0,-94.5404,-9.0309,-94.5404	1/1:128:0,127,0:0:0:127,0:4459,0:-400.926,-38.2308,0,-400.926,-38.2308,-400.926	.:.:.:.:.:.:.:.	1/2:60:0,29,30:0:0:29,30:1020,1080:-171.103,-88.0776,-79.3477,-83.021,0,-73.9901	1/1:66:0,66,0:0:0:66,0:2352,0:-211.94,-19.868,0,-211.94,-19.868,-211.94	1/2:74:0,41,33:0:0:41,33:1433,1180:-213.142,-96.5741,-84.2318,-116.922,0,-106.988	1/2:145:0,87,58:0:0:87,58:3082,2067:-419.643,-168.648,-142.458,-251.35,0,-233.891	1/2:96:0,44,52:0:0:44,52:1536,1860:-276.955,-152.024,-138.779,-125.283,0,-109.63	1/2:25:0,10,15:0:0:10,15:359,536:-73.3445,-44.0594,-41.0491,-29.6433,0,-25.1279	1/2:27:0,11,15:0:0:11,15:382,536:-74.7496,-43.6997,-40.3884,-31.0424,0,-26.527	1/1:72:0,72,0:0:0:72,0:2532,0:-228.132,-21.6742,0,-228.132,-21.6742,-228.132	1/1:31:0,31,0:0:0:31,0:1097,0:-99.0401,-9.33193,0,-99.0401,-9.33193,-99.0401	1/2:54:0,30,24:0:0:30,24:1049,856:-155.472,-70.1364,-61.1055,-85.6886,0,-78.4639	1/1:67:0,67,0:0:0:67,0:2373,0:-213.828,-20.169,0,-213.828,-20.169,-213.828	1/2:5:0,3,2:0:0:3,2:107,68:-14.5882,-5.85565,-4.95256,-9.07908,0,-8.47702	1/1:29:0,29,0:0:0:29,0:1015,0:-91.6611,-8.72987,0,-91.6611,-8.72987,-91.6611	1/2:24:0,12,12:0:0:12,12:430,424:-69.9562,-34.8841,-31.2717,-35.4278,0,-31.8155	1/2:5:0,4,1:0:0:4,1:139,36:-14.588,-3.29724,-2.09312,-11.6481,0,-11.3471	1/1:42:0,42,0:0:0:42,0:1500,0:-135.295,-12.6433,0,-135.295,-12.6433,-135.295	1/2:15:0,4,11:0:0:4,11:138,392:-43.5165,-32.3087,-31.1046,-11.5557,0,-8.24436	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.3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chr09	21495722	.	A	C	64964.8	PASS	AB=0.494679;ABP=3.72667;AC=139;AF=0.739362;AN=188;AO=4993;CIGAR=1X;DP=6478;DPB=6478;DPRA=0;EPP=10845.2;EPPR=3218.96;GTI=2;LEN=1;MEANALT=1.04255;MQM=27.2994;MQMR=38.6192;NS=94;NUMALT=1;ODDS=1.45461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177932;QR=52899;RO=1481;RPL=0;RPP=10845.2;RPPR=3218.96;RPR=4993;RUN=1;SAF=0;SAP=10845.2;SAR=4993;SRF=0;SRP=3218.96;SRR=1481;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:233:-15.797,-2.10721,0	1/1:84:0,84:0:0:84:2991:-193.201,-25.2865,0	1/1:84:0,84:0:0:84:2994:-192.322,-25.2865,0	1/1:180:2,177:2:72:177:6303:-424.908,-47.6184,0	0/1:74:23,51:23:828:51:1832:-94.6051,0,-48.0256	0/1:15:5,10:5:180:10:360:-17.821,0,-10.6601	0/1:58:37,20:37:1332:20:705:-31.1252,0,-97.4036	0/1:91:33,58:33:1176:58:2049:-104.469,0,-69.2796	0/1:28:16,12:16:561:12:432:-19.4611,0,-38.4422	1/1:57:0,57:0:0:57:2020:-138.094,-17.1587,0	0/1:36:26,10:26:919:10:360:-14.0624,0,-67.919	1/1:53:1,52:1:36:52:1847:-116.712,-12.6556,0	1/1:49:0,49:0:0:49:1722:-111.591,-14.7505,0	1/1:35:0,35:0:0:35:1252:-80.5872,-10.5361,0	0/1:49:33,16:33:1184:16:572:-24.0216,0,-86.8203	0/1:33:17,16:17:597:16:572:-26.6888,0,-40.9807	0/1:46:24,22:24:864:22:779:-36.8285,0,-56.2372	0/1:46:21,25:21:756:25:892:-43.4845,0,-48.9285	1/1:19:0,19:0:0:19:676:-43.3137,-5.71957,0	1/1:166:0,166:0:0:166:5916:-405.89,-49.971,0	1/1:68:0,68:0:0:68:2432:-156.647,-20.47,0	0/1:121:94,27:94:3360:27:968:-33.905,0,-255.733	0/1:45:29,16:29:1044:16:563:-25.7016,0,-75.603	1/1:32:0,32:0:0:32:1128:-73.2338,-9.63296,0	1/1:29:1,28:1:32:28:992:-61.4308,-5.62714,0	1/1:243:0,243:0:0:243:8671:-625.32,-73.1503,0	0/1:109:61,48:61:2192:48:1720:-77.5449,0,-151.151	0/1:20:12,8:12:424:8:288:-12.658,0,-30.2051	1/1:212:0,212:0:0:212:7586:-549.281,-63.8184,0	1/1:162:0,162:0:0:162:5794:-372.429,-48.7669,0	0/1:78:46,32:46:1648:32:1152:-56.2446,0,-117.212	1/1:9:0,9:0:0:9:324:-20.9814,-2.70927,0	0/1:6:5,1:5:180:1:36:-0.752527,0,-13.7768	0/1:6:4,2:4:144:2:72:-3.05536,0,-10.4002	1/1:9:0,9:0:0:9:320:-20.9305,-2.70927,0	0/1:6:2,4:2:72:4:144:-7.66103,0,-4.2297	0/1:141:63,78:63:2252:78:2767:-158.78,0,-154.25	1/1:182:1,181:1:36:181:6460:-411.457,-51.3999,0	1/1:37:0,37:0:0:37:1288:-83.644,-11.1381,0	1/1:1:0,1:0:0:1:36:-2.55871,-0.30103,0	0/1:133:66,67:66:2364:67:2373:-113.617,0,-159.431	1/1:18:0,18:0:0:18:636:-43.0369,-5.41854,0	0/1:91:45,46:45:1612:46:1618:-77.7492,0,-109.469	0/1:42:24,18:24:860:18:640:-31.8091,0,-60.3882	0/1:35:17,18:17:612:18:644:-33.9902,0,-42.6631	0/1:53:30,23:30:1067:23:824:-42.8277,0,-77.1874	0/1:150:46,104:46:1629:104:3728:-193.97,0,-88.1536	1/1:123:1,122:1:36:122:4333:-293.798,-33.5722,0	1/1:69:0,69:0:0:69:2463:-169.71,-20.7711,0	0/1:163:61,101:61:2177:101:3618:-199.07,0,-137.786	1/1:79:0,79:0:0:79:2816:-204.767,-23.7814,0	0/1:7:2,5:2:63:5:180:-10.4793,0,-3.71942	1/1:104:0,104:0:0:104:3702:-238.232,-31.3071,0	0/1:30:16,14:16:557:14:492:-27.2628,0,-38.6258	1/1:6:0,6:0:0:6:212:-14.0217,-1.80618,0	1/1:258:3,255:3:108:255:9095:-575.69,-68.1805,0	0/1:28:22,6:22:783:6:216:-6.62027,0,-59.6788	0/1:5:2,3:2:72:3:108:-6.62259,0,-5.14998	0/1:8:4,4:4:144:4:144:-8.33199,0,-10.1372	0/1:21:12,9:12:432:9:320:-14.6089,0,-30.664	1/1:87:1,86:1:36:86:3060:-206.904,-22.5913,0	0/1:3:2,1:2:72:1:36:-1.83311,0,-5.66044	0/1:211:99,112:99:3551:112:3991:-225.005,0,-246.777	1/1:76:0,76:0:0:76:2724:-187.336,-22.8783,0	0/1:38:21,17:21:752:17:597:-27.1066,0,-51.3294	1/1:81:0,81:0:0:81:2882:-196.877,-24.3834,0	0/1:142:78,64:78:2795:64:2296:-114.826,0,-196.891	1/1:39:0,39:0:0:39:1396:-95.5941,-11.7402,0	1/1:20:0,20:0:0:20:707:-46.0701,-6.0206,0	1/1:40:0,40:0:0:40:1436:-92.3189,-12.0412,0	0/1:89:42,47:42:1508:47:1669:-94.4637,0,-103.849	0/1:25:13,12:13:453:12:432:-22.2989,0,-30.8501	1/1:59:0,59:0:0:59:2104:-135.942,-17.7608,0	0/1:21:14,7:14:491:7:248:-10.0031,0,-34.7642	1/1:53:0,53:0:0:53:1886:-121.706,-15.9546,0	1/1:153:0,153:0:0:153:5459:-375.88,-46.0576,0	0/1:92:42,50:42:1488:50:1796:-87.6526,0,-94.9415	1/1:77:0,77:0:0:77:2772:-177.649,-23.1793,0	0/1:3:2,1:2:72:1:36:-1.65562,0,-5.36506	0/1:94:48,46:48:1724:46:1647:-77.6981,0,-117.201	0/1:162:60,102:60:2134:102:3633:-185.409,0,-126.542	1/1:127:0,127:0:0:127:4536:-310.287,-38.2308,0	1/1:69:0,69:0:0:69:2463:-168.24,-20.7711,0	1/1:38:0,38:0:0:38:1354:-93.3714,-11.4391,0	0/1:45:20,25:20:716:25:869:-47.3509,0,-48.0945	1/1:84:0,84:0:0:84:2988:-204.469,-25.2865,0	0/1:43:27,16:27:959:16:563:-23.9141,0,-66.2542	0/1:60:31,29:31:1103:29:1028:-48.3481,0,-73.402	1/1:33:0,33:0:0:33:1168:-75.8471,-9.93399,0	0/1:22:10,12:10:356:12:432:-21.2672,0,-23.9453	0/1:42:32,10:32:1136:10:360:-10.641,0,-84.1858	0/1:47:31,16:31:1112:16:564:-25.144,0,-81.2798	1/1:83:1,81:1:36:81:2877:-193.967,-21.5306,0	1/1:71:0,71:0:0:71:2513:-172.159,-21.3731,0
chr09	21513246	.	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chr09	21513270	.	T	A	43452.2	PASS	AB=0.51057;ABP=6.63678;AC=52;AF=0.276596;AN=188;AO=1924;CIGAR=1X;DP=8731;DPB=8731;DPRA=0.81357;EPP=38.7696;EPPR=24.2477;GTI=4;LEN=1;MEANALT=1.01639;MQM=59.9699;MQMR=59.9818;NS=94;NUMALT=1;ODDS=0.856158;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68683;QR=244048;RO=6806;RPL=873;RPP=38.7696;RPPR=24.5783;RPR=1051;RUN=1;SAF=0;SAP=4180.92;SAR=1924;SRF=1;SRP=14773.4;SRR=6805;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:131:131,0:131:4689:0:0:0,-39.4349,-422.169	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.384	0/0:222:222,0:222:7961:0:0:0,-66.8287,-716.504	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	0/1:38:14,24:14:500:24:864:-66.6434,0,-33.897	0/1:84:34,50:34:1224:50:1792:-136.276,0,-85.1805	0/1:109:42,67:42:1500:67:2404:-183.79,0,-102.482	0/1:63:33,30:33:1180:30:1042:-75.1215,0,-87.5432	0/0:74:73,1:73:2619:1:21:0,-20.1763,-233.857	0/1:115:55,60:55:1976:60:2160:-160.048,0,-143.41	0/0:82:81,1:81:2908:1:36:0,-21.0862,-258.357	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:190:190,0:190:6828:0:0:0,-57.1957,-614.587	0/1:66:27,39:27:972:39:1400:-106.431,0,-67.9299	0/1:167:81,86:81:2912:86:3088:-227.875,0,-212.043	0/1:95:52,43:52:1872:43:1538:-110.115,0,-140.161	0/1:68:34,34:34:1220:34:1220:-89.6368,0,-89.6368	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.56	0/0:112:112,0:112:4004:0:0:0,-33.7154,-360.55	0/1:58:19,39:19:684:39:1395:-108.389,0,-44.4306	0/1:73:42,31:42:1512:31:1089:-76.3415,0,-114.399	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.5	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/0:239:239,0:239:8504:0:0:0,-71.9462,-765.36	0/1:95:43,52:43:1544:52:1840:-137.28,0,-110.655	0/1:46:25,21:25:900:21:756:-54.5198,0,-67.4736	0/0:244:243,1:243:8724:1:36:0,-69.853,-781.549	0/0:196:195,1:195:6996:1:36:0,-55.4036,-626.103	0/1:93:43,50:43:1540:50:1765:-131.123,0,-110.897	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:197:95,102:95:3393:102:3651:-269.491,0,-246.281	0/0:147:147,0:147:5264:0:0:0,-44.2514,-473.896	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:127:50,77:50:1796:77:2756:-210.023,0,-123.692	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:78:46,32:46:1652:32:1135:-78.9777,0,-125.488	0/1:89:51,38:51:1817:38:1359:-95.8182,0,-137.018	0/1:62:28,34:28:1008:34:1220:-91.4429,0,-72.3725	0/1:80:43,37:43:1544:37:1324:-95.3797,0,-115.171	0/1:110:56,54:56:2008:54:1907:-138.791,0,-147.88	0/0:109:107,2:107:3821:2:57:0,-27.3991,-338.673	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:96:52,44:52:1864:44:1580:-113.593,0,-139.141	0/0:152:152,0:152:5449:0:0:0,-45.7566,-490.536	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/0:146:146,0:146:5252:0:0:0,-43.9504,-472.814	0/1:45:32,13:32:1133:13:468:-28.9133,0,-88.7303	0/1:20:9,11:9:324:11:379:-28.42,0,-23.4853	0/0:117:116,1:116:4145:1:36:0,-31.6222,-368.61	0/1:48:27,21:27:972:21:756:-53.9178,0,-73.3485	0/1:19:10,9:10:360:9:315:-22.9675,0,-27.0247	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/1:49:27,22:27:972:22:783:-56.0425,0,-73.0474	0/0:187:185,2:185:6633:2:72:0,-49.4559,-590.209	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:159:77,82:77:2734:82:2936:-216.611,0,-198.436	0/0:218:216,2:216:7737:2:72:0,-58.7878,-689.523	0/1:35:17,18:17:612:18:648:-48.1158,0,-44.8774	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/1:156:73,83:73:2616:83:2936:-217.513,0,-188.727	0/0:126:124,1:124:4418:1:36:0,-34.3454,-394.236	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:109:69,40:69:2484:40:1436:-96.7254,0,-191	0/1:37:30,7:30:1076:7:252:-11.8908,0,-86.0147	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.439	0/1:40:11,29:11:396:29:1040:-81.8732,0,-23.9415	0/0:159:159,0:159:5700:0:0:0,-47.8638,-513.117	0/0:151:151,0:151:5420:0:0:0,-45.4555,-487.928	0/1:46:29,17:29:1040:17:608:-41.2046,0,-80.067	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:92:48,44:48:1728:44:1576:-114.437,0,-128.111	0/1:105:54,51:54:1944:51:1815:-132.023,0,-143.628	0/0:182:182,0:182:6512:0:0:0,-54.7875,-586.164	0/0:114:114,0:114:4085:0:0:0,-34.3174,-367.834	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:73:32,41:32:1152:41:1468:-110.441,0,-82.015	0/0:152:150,2:150:5384:2:72:0,-38.9198,-477.853	0/1:45:14,31:14:504:31:1076:-83.598,0,-32.1517	0/1:78:36,42:36:1296:42:1512:-112.894,0,-93.4636	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.171	0/1:157:72,85:72:2592:85:3051:-227.556,0,-186.266	0/1:238:127,111:127:4568:111:3970:-285.845,0,-339.638	0/1:63:19,44:19:684:44:1567:-122.355,0,-42.9254	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/0:122:122,0:122:4380:0:0:0,-36.7257,-394.372
chr09	21573643	.	TTTTG	TTTCG,TTTCA	190366	PASS	AB=0.452182,0.541442;ABP=84.0012,63.8435;AC=137,51;AF=0.728723,0.271277;AN=188;AO=6655,2220;CIGAR=3M1X1M,3M2X;DP=8926;DPB=8926;DPRA=0,0.868246;EPP=14454.2,4823.68;EPPR=7.35324;GTI=1;LEN=1,2;MEANALT=2.07447,2.48333;MQM=59.8503,56.0149;MQMR=60;NS=94;NUMALT=2;ODDS=2.39429;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=236926,78474;QR=72;RO=2;RPL=0,0;RPP=14454.2,4823.68;RPPR=7.35324;RPR=6655,2220;RUN=1,1;SAF=0,0;SAP=14454.2,4823.68;SAR=6655,2220;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44,0:0:0:44,0:1549,0:-139.7,-13.2453,0,-139.7,-13.2453,-139.7	1/1:180:0,179,0:0:0:179,0:6428,0:-578.35,-53.8844,0,-578.35,-53.8844,-578.35	1/1:108:0,107,0:0:0:107,0:3821,0:-343.829,-32.2102,0,-343.829,-32.2102,-343.829	1/1:174:0,174,0:0:0:174,0:6188,0:-557.016,-52.3792,0,-557.016,-52.3792,-557.016	1/2:63:0,24,38:0:0:24,38:860,1348:-179.897,-109.759,-102.534,-70.1637,0,-58.7246	1/2:48:0,21,27:0:0:21,27:756,931:-137.509,-75.8161,-69.4944,-62.0456,0,-53.9178	1/2:171:0,63,107:0:0:63,107:2256,3776:-491.27,-307.297,-288.332,-183.973,0,-151.763	1/2:133:0,53,79:0:0:53,79:1891,2798:-381.733,-227.58,-211.625,-154.198,0,-130.417	1/2:110:0,42,68:0:0:42,68:1492,2425:-318.411,-196.835,-184.191,-121.931,0,-101.461	1/1:95:0,95,0:0:0:95,0:3403,0:-306.447,-28.5979,0,-306.447,-28.5979,-306.447	1/2:65:0,30,35:0:0:30,35:1080,1241:-189.518,-101.394,-92.3633,-88.4814,0,-77.9454	1/1:61:0,61,0:0:0:61,0:2170,0:-195.565,-18.3628,0,-195.565,-18.3628,-195.565	1/1:66:0,66,0:0:0:66,0:2326,0:-209.595,-19.868,0,-209.595,-19.868,-209.595	1/1:61:0,60,1:0:0:60,1:2117,36:-190.419,-18.0618,0,-187.484,-14.7672,-187.183	1/2:47:0,25,22:0:0:25,22:900,758:-135.328,-61.8839,-54.3582,-73.7953,0,-67.1726	1/2:49:0,30,19:0:0:30,19:1063,673:-141.668,-55.0782,-46.0473,-86.9434,0,-81.2239	1/2:46:0,23,23:0:0:23,23:820,826:-134.455,-67.6138,-60.6901,-67.1988,0,-60.2751	1/2:61:0,31,30:0:0:31,30:1101,1053:-175.593,-85.8787,-76.5467,-90.0664,0,-81.0355	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/1:165:0,165,0:0:0:165,0:5897,0:-530.836,-49.67,0,-530.836,-49.67,-530.836	1/1:119:0,118,0:0:0:118,0:4217,0:-379.063,-35.5215,0,-379.063,-35.5215,-379.063	1/2:152:0,40,112:0:0:40,112:1424,3992:-441.696,-325.637,-313.595,-116.415,0,-82.7	1/2:90:0,53,37:0:0:53,37:1887,1321:-261.811,-108.016,-92.0615,-154.151,0,-143.013	1/1:127:0,127,0:0:0:127,0:4530,0:-407.863,-38.2308,0,-407.863,-38.2308,-407.863	1/1:90:0,89,0:0:0:89,0:3177,0:-285.785,-26.7917,0,-285.785,-26.7917,-285.785	1/1:294:0,292,0:0:0:292,0:10377,0:-933.437,-87.9008,0,-933.437,-87.9008,-933.437	1/2:236:0,126,110:0:0:126,110:4516,3901:-686.098,-317.784,-279.854,-368.67,0,-335.557	1/2:19:0,5,14:0:0:5,14:180,498:-55.5985,-40.9102,-39.4051,-15.0469,0,-10.8325	1/1:217:0,215,1:0:0:215,1:7652,36:-688.35,-64.7215,0,-685.414,-61.7849,-685.113	1/1:123:0,122,0:0:0:122,0:4360,0:-392.211,-36.7257,0,-392.211,-36.7257,-392.211	1/2:105:0,53,52:0:0:53,52:1896,1845:-305.235,-150.627,-134.673,-154.963,0,-139.31	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:29:0,6,19:0:0:6,19:216,679:-72.8796,-55.2539,-53.4478,-17.6342,0,-11.9147	1/2:6:0,1,5:0:0:1,5:36,180:-17.9609,-15.0234,-14.7224,-3.29724,0,-1.79209	1/1:4:0,4,0:0:0:4,0:144,0:-13.3089,-1.20412,0,-13.3089,-1.20412,-13.3089	1/2:18:0,8,10:0:0:8,10:288,358:-53.0083,-29.5079,-27.0996,-23.8592,0,-20.8489	1/2:192:0,99,91:0:0:99,91:3479,3163:-540.13,-257.049,-227.247,-283.137,0,-255.743	1/1:184:0,180,1:0:0:180,1:6340,36:-570.286,-54.1854,0,-567.351,-51.2503,-567.05	1/1:68:0,68,0:0:0:68,0:2419,0:-217.948,-20.47,0,-217.948,-20.47,-217.948	1/2:4:0,1,3:0:0:1,3:32,100:-10.9382,-8.36263,-8.0616,-2.89828,0,-1.99519	1/2:124:0,58,66:0:0:58,66:2076,2352:-361.196,-191.902,-174.443,-169.651,0,-149.783	1/1:48:0,48,0:0:0:48,0:1703,0:-153.551,-14.4494,0,-153.551,-14.4494,-153.551	1/2:118:0,47,70:0:0:47,70:1666,2494:-338.83,-203.11,-188.961,-135.828,0,-114.756	1/2:95:0,48,47:0:0:48,47:1686,1654:-272.077,-134.889,-120.44,-137.539,0,-123.391	1/2:48:1,21,26:1:36:21,26:739,912:-131.077,-71.2197,-67.8358,-57.2126,0,-52.3236	1/2:114:0,58,55:0:0:58,55:2047,1941:-324.811,-158.125,-140.665,-166.811,0,-150.255	1/2:144:0,49,95:0:0:49,95:1734,3388:-417.05,-276.037,-261.286,-141.367,0,-112.769	1/1:153:0,151,1:0:0:151,1:5406,36:-486.347,-45.4555,0,-483.41,-42.4791,-483.109	1/1:140:0,139,0:0:0:139,0:4968,0:-446.967,-41.8432,0,-446.967,-41.8432,-446.967	1/2:148:0,76,72:0:0:76,72:2712,2545:-428.625,-207.535,-184.656,-221.445,0,-199.771	1/1:153:0,151,1:0:0:151,1:5416,36:-487.201,-45.4555,0,-484.265,-42.4741,-483.964	1/2:9:0,3,6:0:0:3,6:104,216:-26.4178,-17.9689,-17.0658,-8.79971,0,-6.99353	1/1:122:0,122,0:0:0:122,0:4376,0:-393.999,-36.7257,0,-393.999,-36.7257,-393.999	1/2:73:0,30,43:0:0:30,43:1080,1533:-213.272,-125.149,-116.118,-88.4814,0,-75.5372	1/2:15:0,11,4:0:0:11,4:396,144:-44.4026,-12.0906,-8.77929,-32.6714,0,-31.4673	1/1:136:0,136,0:0:0:136,0:4844,0:-436.042,-40.9401,0,-436.042,-40.9401,-436.042	1/2:77:0,38,37:0:0:38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chr09	21677661	.	C	T	92312.7	PASS	AB=0.524476;ABP=42.7664;AC=51;AF=0.271277;AN=188;AO=4040;CIGAR=1X;DP=16703;DPB=16703;DPRA=1.09747;EPP=8775.76;EPPR=27461.3;GTI=0;LEN=1;MEANALT=1.08571;MQM=59.8891;MQMR=59.964;NS=94;NUMALT=1;ODDS=1.57224;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143770;QR=445770;RO=12653;RPL=1876;RPP=47.5921;RPPR=250.551;RPR=2164;RUN=1;SAF=1876;SAP=47.5921;SAR=2164;SRF=5724;SRP=252.203;SRR=6929;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:69:69,0:69:2445:0:0:0,-20.7711,-220.303	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:450:447,1:447:15797:1:36:0,-131.623,-1417.85	0/1:86:49,37:49:1703:37:1328:-93.9337,0,-127.576	0/1:51:29,22:29:1028:22:788:-55.8923,0,-77.4805	0/1:225:81,144:81:2856:144:5117:-392.94,0,-189.544	0/1:143:83,60:83:2932:60:2137:-149.547,0,-221.058	0/1:156:83,72:83:2934:72:2580:-184.47,0,-217.424	0/0:290:289,1:289:10223:1:36:0,-83.7004,-916.394	0/1:146:63,83:63:2188:83:2950:-221.783,0,-153.235	0/0:115:115,0:115:4016:0:0:0,-34.6184,-361.626	0/0:95:95,0:95:3342:0:0:0,-28.5978,-301.001	0/0:185:184,0:184:6519:0:0:0,-55.3895,-586.582	0/1:214:111,103:111:3928:103:3688:-267.701,0,-289.294	0/1:174:77,97:77:2704:97:3447:-257.98,0,-191.228	0/1:40:20,20:20:695:20:712:-52.3621,0,-50.8302	0/1:56:29,27:29:1036:27:964:-70.2111,0,-76.6962	0/0:35:34,1:34:1182:1:36:0,-6.93777,-103.085	0/0:281:279,1:279:9827:1:36:0,-81.0498,-880.79	0/0:383:382,1:382:13575:1:36:0,-111.696,-1217.95	0/1:135:47,88:47:1652:88:3121:-240.478,0,-108.326	0/1:200:83,117:83:2933:117:4151:-313.561,0,-203.999	0/0:182:180,2:180:6387:2:72:0,-47.9507,-568.089	0/0:115:115,0:115:4077:0:0:0,-34.6184,-367.118	0/0:636:635,1:635:22382:1:36:0,-187.857,-2010.23	0/1:392:193,199:193:6825:199:7132:-523.924,0,-496.322	0/1:93:42,51:42:1479:51:1832:-137.162,0,-105.408	0/0:280:277,3:277:9800:3:108:0,-74.2132,-871.876	0/0:314:312,2:312:11062:2:72:0,-87.6867,-988.647	0/1:312:163,149:163:5715:149:5318:-384.833,0,-420.553	0/0:14:14,0:14:482:0:0:0,-4.21442,-43.7061	0/1:29:12,17:12:424:17:599:-45.5067,0,-29.7619	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:9:9,0:9:307:0:0:0,-2.70927,-27.914	0/1:11:3,8:3:108:8:280:-22.228,0,-6.76384	0/1:478:236,242:236:8240:242:8537:-624.442,0,-597.733	0/0:341:341,0:341:12123:0:0:0,-102.651,-1090.82	0/0:76:76,0:76:2673:0:0:0,-22.8783,-240.816	0/1:13:6,7:6:212:7:248:-18.7508,0,-15.5114	0/1:293:125,168:125:4446:168:5967:-448.929,0,-312.111	0/0:100:100,0:100:3514:0:0:0,-30.103,-316.475	0/1:235:106,128:106:3776:128:4572:-340.824,0,-269.233	0/1:196:94,102:94:3264:102:3621:-267.085,0,-234.979	0/1:178:89,89:89:3108:89:3109:-226.441,0,-226.364	0/1:255:139,116:139:4917:116:4159:-297.729,0,-365.92	0/1:96:56,40:56:1957:40:1429:-100.005,0,-147.503	0/0:281:279,1:279:9728:1:36:0,-81.0499,-871.846	0/0:146:146,0:146:5113:0:0:0,-43.9504,-460.316	0/1:300:148,152:148:5272:152:5421:-397.711,0,-384.307	0/0:168:168,0:168:5872:0:0:0,-50.573,-528.591	0/1:16:10,6:10:360:6:212:-14.6083,0,-27.9278	0/0:57:57,0:57:2007:0:0:0,-17.1587,-180.9	0/1:152:78,74:78:2776:74:2620:-190.29,0,-204.326	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:264:264,0:264:9285:0:0:0,-79.4719,-835.136	0/1:82:48,34:48:1705:34:1212:-84.7019,0,-129.049	0/1:19:5,14:5:180:14:491:-38.8015,0,-10.8325	0/1:23:11,12:11:392:12:428:-31.9351,0,-28.6964	0/1:193:90,103:90:3188:103:3667:-272.136,0,-229.048	0/0:239:237,2:237:8339:2:72:0,-65.1094,-743.693	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:311:137,174:137:4835:174:6194:-463.939,0,-341.129	0/0:272:268,4:268:9423:4:144:0,-69.1377,-835.142	0/1:124:72,52:72:2555:52:1856:-129.992,0,-192.873	0/0:174:174,0:174:6166:0:0:0,-52.3792,-555.042	0/1:461:220,241:220:7802:241:8589:-634.233,0,-563.441	0/0:267:264,3:264:9326:3:108:0,-70.2998,-829.235	0/0:82:80,2:80:2765:2:72:0,-17.8477,-242.254	0/0:106:105,1:105:3747:1:36:0,-28.3506,-333.854	0/1:204:109,95:109:3790:95:3374:-242.463,0,-279.893	0/1:46:19,27:19:654:27:956:-72.5084,0,-45.3327	0/0:136:134,2:134:4739:2:72:0,-34.1034,-419.835	0/1:95:44,51:44:1542:51:1823:-135.75,0,-110.47	0/0:581:580,0:580:20510:0:0:0,-174.597,-1844.91	0/0:207:207,0:207:7256:0:0:0,-62.3132,-653.103	0/1:142:65,77:65:2286:77:2718:-202.029,0,-163.253	0/0:113:112,1:112:3980:1:36:0,-30.4181,-354.792	0/1:6:2,4:2:68:4:140:-11.1384,0,-4.65153	0/1:165:89,76:89:3151:76:2724:-195.711,0,-234.147	0/1:139:64,75:64:2266:75:2673:-198.965,0,-162.221	0/0:389:388,1:388:13651:1:32:0,-113.901,-1225.19	0/0:215:215,0:215:7447:0:0:0,-64.7214,-670.271	0/0:203:203,0:203:7147:0:0:0,-61.1091,-643.295	0/1:259:129,129:129:4527:129:4581:-334.428,0,-329.576	0/0:351:348,3:348:12126:3:108:0,-95.5864,-1081.14	0/1:28:11,17:11:374:17:608:-46.6165,0,-25.5576	0/1:79:44,35:44:1534:35:1252:-89.2037,0,-114.569	0/0:93:93,0:93:3260:0:0:0,-27.9958,-293.578	0/1:120:44,76:44:1531:76:2716:-208.449,0,-101.958	0/1:259:107,152:107:3754:152:5403:-408.424,0,-260.096	0/1:187:56,131:56:1931:131:4638:-361.292,0,-117.769	0/0:245:244,0:244:8527:0:0:0,-73.4513,-766.998	0/0:341:341,0:341:11938:0:0:0,-102.651,-1074.3
chr09	21677679	.	T	C	153781	PASS	AB=0.494511;ABP=4.13078;AC=136;AF=0.723404;AN=188;AO=7041;CIGAR=1X;DP=9229;DPB=9229;DPRA=16.5287;EPP=14427.7;EPPR=4400.1;GTI=4;LEN=1;MEANALT=1.06452;MQM=59.9257;MQMR=59.8185;NS=94;NUMALT=1;ODDS=0.764983;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251880;QR=78374;RO=2182;RPL=6940;RPP=14427.7;RPPR=4400.1;RPR=101;RUN=1;SAF=0;SAP=15292.3;SAR=7041;SRF=0;SRP=4741.16;SRR=2182;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:67:0,67:0:0:67:2391:-215.446,-20.169,0	1/1:81:0,81:0:0:81:2907:-261.864,-24.3834,0	1/1:82:0,82:0:0:82:2929:-263.843,-24.6845,0	1/1:280:0,280:0:0:280:10043:-903.802,-84.2884,0	0/1:25:11,14:11:396:14:500:-37.7228,0,-28.457	0/1:51:23,28:23:824:28:1004:-75.3233,0,-59.1308	0/1:98:62,36:62:2224:36:1287:-86.6319,0,-170.923	0/1:143:60,83:60:2156:83:2957:-223.309,0,-151.256	0/1:159:74,85:74:2664:85:3038:-225.786,0,-191.034	1/1:110:0,109:0:0:109:3904:-351.194,-32.8123,0	0/1:73:39,34:39:1396:34:1224:-88.4919,0,-103.935	1/1:112:0,112:0:0:112:4018:-361.792,-33.7154,0	1/1:97:0,97:0:0:97:3480:-313.411,-29.1999,0	1/1:70:0,70:0:0:70:2503:-225.503,-21.0721,0	0/1:116:58,58:58:2084:58:2088:-153.27,0,-152.909	0/1:91:58,33:58:2088:33:1176:-78.754,0,-160.721	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2094	0/1:57:26,31:26:932:31:1116:-83.593,0,-67.0301	1/1:38:1,37:1:36:37:1328:-116.224,-7.84087,0	1/1:174:1,173:1:36:173:6193:-553.864,-48.7809,0	1/1:183:0,183:0:0:183:6552:-589.633,-55.0885,0	0/1:94:57,37:57:2052:37:1332:-91.8856,0,-156.655	0/1:129:73,56:73:2628:56:2012:-142.52,0,-197.926	1/1:54:2,52:2:72:52:1864:-161.203,-9.4189,0	1/1:87:0,87:0:0:87:3049:-274.638,-26.1896,0	1/1:229:0,229:0:0:229:8215:-739.359,-68.9359,0	0/1:249:121,128:121:4348:128:4580:-337.4,0,-316.507	0/1:53:25,28:25:900:28:999:-74.2699,0,-65.3633	1/1:170:0,170:0:0:170:6078:-547.112,-51.1751,0	1/1:101:1,100:1:36:100:3584:-319.168,-26.8058,0	0/1:148:49,99:49:1760:99:3546:-274.796,0,-114.131	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:24:15,9:15:540:9:324:-22.2765,0,-41.7103	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:13:9,4:9:316:4:144:-9.40023,0,-24.8655	0/1:206:104,101:104:3736:101:3610:-263.18,0,-274.516	1/1:102:0,102:0:0:102:3656:-329.158,-30.7051,0	1/1:76:0,76:0:0:76:2709:-244.053,-22.8783,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:124:63,61:63:2253:61:2186:-159.678,0,-165.692	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	0/1:108:51,57:51:1832:57:2036:-150.983,0,-132.63	0/1:87:45,41:45:1616:41:1463:-105.717,0,-119.412	0/1:75:37,38:37:1332:38:1360:-100.123,0,-97.5906	0/1:140:63,77:63:2268:77:2764:-206.857,0,-162.238	0/1:98:44,54:44:1576:54:1927:-144.205,0,-112.62	1/1:145:1,144:1:36:144:5122:-457.427,-40.0511,0	1/1:88:0,88:0:0:88:3160:-284.622,-26.4906,0	0/1:168:76,92:76:2728:92:3308:-247.364,0,-195.189	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:117:48,69:48:1713:69:2455:-185.984,0,-119.233	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	1/1:153:0,153:0:0:153:5424:-488.278,-46.0576,0	0/1:36:12,24:12:432:24:860:-66.871,0,-28.3841	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:136:63,73:63:2264:73:2616:-194.71,0,-163.082	1/1:105:2,103:2:72:103:3704:-326.724,-24.7714,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:146:68,78:68:2444:78:2792:-207.57,0,-176.264	1/1:102:1,101:1:36:101:3592:-319.26,-27.1068,0	0/1:29:9,20:9:324:20:716:-56.0378,0,-20.776	1/1:78:0,78:0:0:78:2777:-250.17,-23.4803,0	0/1:232:131,101:131:4712:101:3612:-255.437,0,-354.397	1/1:179:0,179:0:0:179:6415:-577.398,-53.8844,0	1/1:55:2,53:2:68:53:1892:-164.101,-10.0989,0	1/1:110:0,110:0:0:110:3939:-354.666,-33.1133,0	0/1:57:20,37:20:720:37:1323:-102.213,0,-47.9667	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	1/1:140:2,137:2:72:137:4908:-435.077,-35.2797,0	0/1:95:50,45:50:1796:45:1608:-116.412,0,-133.318	1/1:338:0,338:0:0:338:12081:-1087.05,-101.748,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	0/1:146:78,68:78:2800:68:2429:-174.915,0,-208.112	1/1:114:0,114:0:0:114:4084:-367.746,-34.3174,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:55:29,26:29:1044:26:912:-65.8154,0,-77.7182	0/1:142:78,64:78:2796:64:2300:-164.449,0,-209.127	1/1:212:0,212:0:0:212:7566:-680.979,-63.8184,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:116:0,115:0:0:115:4111:-369.815,-34.6185,0	0/1:94:49,45:49:1756:45:1612:-117.073,0,-130.025	1/1:178:1,176:1:36:176:6292:-562.764,-50.0439,0	0/1:28:17,11:17:608:11:387:-26.7371,0,-46.6165	0/1:81:36,45:36:1292:45:1607:-120.536,0,-92.199	1/1:95:0,95:0:0:95:3385:-304.854,-28.5979,0	0/1:70:50,20:50:1800:20:720:-44.0567,0,-141.1	0/1:107:72,35:72:2592:35:1256:-81.1351,0,-201.188	0/1:87:63,24:63:2268:24:860:-51.5322,0,-178.188	1/1:127:0,127:0:0:127:4551:-409.755,-38.2308,0	1/1:179:0,179:0:0:179:6424:-578.245,-53.8844,0
chr09	21707485	.	T	C	31344.6	PASS	AB=0.480116;ABP=16.05;AC=51;AF=0.271277;AN=188;AO=1835;CIGAR=1X;DP=8701;DPB=8701;DPRA=0.811742;EPP=3507.95;EPPR=13581.6;GTI=2;LEN=1;MEANALT=1.03333;MQM=58.9924;MQMR=59.2473;NS=94;NUMALT=1;ODDS=1.5303;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64955;QR=245110;RO=6863;RPL=57;RPP=3507.95;RPPR=13581.6;RPR=1778;RUN=1;SAF=1835;SAP=3987.66;SAR=0;SRF=6863;SRP=14905.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8267	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.099	0/0:166:165,1:165:5894:1:36:0,-46.4683,-526.919	0/0:198:198,0:198:7049:0:0:0,-59.6039,-633.768	0/1:66:28,38:28:1004:38:1343:-101.144,0,-70.3515	0/1:33:15,18:15:540:18:644:-48.3281,0,-38.9669	0/1:101:45,56:45:1600:56:1951:-145.33,0,-113.883	0/1:161:95,66:95:3412:66:2342:-162.513,0,-257.032	0/1:76:40,36:40:1431:36:1266:-91.3064,0,-106.148	0/0:99:99,0:99:3538:0:0:0,-29.802,-318.443	0/1:48:26,22:26:914:22:774:-55.5144,0,-68.1215	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.427	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.328	0/0:64:64,0:64:2261:0:0:0,-19.2659,-203.687	0/1:55:26,29:26:936:29:1018:-75.3341,0,-67.9744	0/1:54:29,25:29:1027:25:877:-62.8844,0,-76.4866	0/1:73:42,31:42:1512:31:1104:-77.6638,0,-114.1	0/1:60:22,38:22:792:38:1340:-102.75,0,-53.487	0/0:32:32,0:32:1130:0:0:0,-9.63296,-101.972	0/0:220:220,0:220:7832:0:0:0,-66.2266,-704.754	0/0:83:83,0:83:2946:0:0:0,-24.9855,-264.593	0/1:138:73,65:73:2624:65:2289:-164.566,0,-194.806	0/1:38:22,15:22:788:15:536:-37.0423,0,-59.7185	0/0:102:102,0:102:3640:0:0:0,-30.7051,-327.679	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.194	0/0:287:287,0:287:10252:0:0:0,-86.3956,-921.98	0/1:173:93,79:93:3315:79:2800:-199.999,0,-246.194	0/1:15:10,5:10:360:5:157:-9.91226,0,-28.2289	0/0:248:246,2:246:8793:2:61:0,-68.9407,-785.374	0/0:139:139,0:139:4970:0:0:0,-41.8432,-446.02	0/1:127:67,60:67:2396:60:2112:-151.82,0,-177.44	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.3936	0/1:21:10,11:10:347:11:396:-29.5977,0,-25.2134	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:163:91,72:91:3225:72:2541:-179.708,0,-240.327	0/0:191:191,0:191:6846:0:0:0,-57.4967,-614.563	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.931	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:121:57,64:57:2044:64:2247:-165.478,0,-147.71	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:95:55,40:55:1972:40:1421:-99.5155,0,-148.174	0/1:52:32,20:32:1148:20:716:-49.0823,0,-87.9171	0/1:71:39,32:39:1366:32:1128:-80.4548,0,-101.791	0/1:93:49,44:49:1752:44:1549:-111.62,0,-129.911	0/1:122:77,45:77:2722:45:1590:-106.572,0,-208.283	0/0:189:188,0:188:6692:0:0:0,-56.5936,-601.437	0/0:182:181,1:181:6440:1:36:0,-51.1892,-575.5	0/1:180:103,77:103:3688:77:2729:-191.525,0,-277.585	0/0:162:162,0:162:5767:0:0:0,-48.7669,-517.73	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:130:130,0:130:4667:0:0:0,-39.1339,-420.014	0/1:26:5,21:5:176:21:738:-58.88,0,-8.35824	0/1:21:11,10:11:387:10:360:-26.4223,0,-28.8157	0/0:127:127,0:127:4556:0:0:0,-38.2308,-409.693	0/1:30:10,20:10:360:20:712:-55.3473,0,-23.7134	0/1:16:10,6:10:356:6:216:-14.9706,0,-27.5648	0/1:25:13,12:13:464:12:426:-31.046,0,-34.5718	0/1:40:18,22:18:648:22:784:-58.7858,0,-46.6107	0/0:105:105,0:105:3754:0:0:0,-31.6081,-337.137	0/1:19:13,6:13:464:6:216:-14.0421,0,-36.3773	0/1:283:149,134:149:5316:134:4776:-344.111,0,-393.276	0/0:178:177,1:177:6322:1:36:0,-49.9851,-564.945	0/1:66:31,35:31:1108:35:1256:-93.4489,0,-80.0052	0/0:78:78,0:78:2772:0:0:0,-23.4803,-249.503	0/1:148:71,77:71:2556:77:2713:-199.777,0,-185.706	0/0:54:53,1:53:1888:1:36:0,-12.6573,-166.482	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0537	0/0:61:61,0:61:2175:0:0:0,-18.3628,-195.956	0/1:88:47,41:47:1692:41:1461:-104.894,0,-125.955	0/1:26:12,14:12:428:14:504:-37.4407,0,-31.032	0/0:154:153,1:153:5460:1:36:0,-42.7918,-487.372	0/1:54:31,23:31:1104:23:820:-57.8384,0,-82.307	0/0:132:129,3:129:4615:3:108:0,-29.7199,-405.31	0/0:226:226,0:226:8097:0:0:0,-68.0328,-728.356	0/1:121:63,58:63:2243:58:2080:-151.017,0,-165.649	0/0:143:143,0:143:5127:0:0:0,-43.0473,-461.227	0/1:22:12,10:12:432:10:356:-25.7469,0,-32.5985	0/1:109:51,58:51:1810:58:2054:-152.261,0,-130.146	0/1:161:85,76:85:3035:76:2695:-194.243,0,-224.877	0/0:173:173,0:173:6168:0:0:0,-52.0782,-554.641	0/0:91:90,1:90:3224:1:36:0,-23.7955,-286.747	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.356	0/1:81:39,42:39:1383:42:1473:-108.289,0,-100.373	0/0:122:121,1:121:4327:1:36:0,-33.1274,-385.866	0/1:45:26,19:26:936:19:671:-47.1125,0,-70.9847	0/1:61:29,32:29:1036:32:1128:-83.4369,0,-75.1849	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.635	0/1:49:27,22:27:968:22:779:-55.59,0,-72.5721	0/1:59:28,31:28:999:31:1103:-81.7739,0,-72.4637	0/1:64:23,41:23:824:41:1447:-111.246,0,-55.2159	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.107	0/0:79:79,0:79:2822:0:0:0,-23.7814,-253.588
chr09	21707493	.	CCAAT	GCAAA,CCAAA	187303	PASS	AB=0.520741,0.475085;ABP=17.3325,23.6775;AC=137,51;AF=0.728723,0.271277;AN=188;AO=6942,1827;CIGAR=1X3M1X,4M1X;DP=8828;DPB=8828.8;DPRA=0,0.709127;EPP=15077.4,3970.29;EPPR=7.35324;GTI=3;LEN=5,1;MEANALT=2.12766,2.29825;MQM=59.2048,59.093;MQMR=60;NS=94;NUMALT=2;ODDS=2.52469;PAIRED=0,0;PAIREDR=0;PAO=3,0.5;PQA=108,0;PQR=0;PRO=0.5;QA=245260,65249;QR=65;RO=2;RPL=6942,1827;RPP=15077.4,3970.29;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=6942,1827;SAP=15077.4,3970.29;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,23,0:0:0:23,0:813,0:-73.1273,-6.92369,0,-73.1273,-6.92369,-73.1273	1/1:114:0,113,0:0:0:113,0:4009,0:-360.474,-34.0164,0,-360.474,-34.0164,-360.474	1/1:170:0,169,0:0:0:169,0:5925,0:-532.769,-50.8741,0,-532.769,-50.8741,-532.769	1/1:203:0,201,0:0:0:201,0:7103,0:-638.158,-60.507,0,-638.158,-60.507,-638.158	1/2:65:0,28,37:0:0:28,37:977,1332:-187.927,-108.887,-100.458,-79.3926,0,-68.2544	1/2:32:0,15,17:0:0:15,17:520,608:-92.1484,-49.906,-45.3906,-42.5939,0,-37.4764	1/2:104:0,46,58:0:0:46,58:1635,2084:-303.393,-170.188,-156.341,-133.561,0,-116.102	1/2:167:0,98,68:0:0:98,68:3447,2440:-478.203,-198.965,-169.464,-279.233,0,-258.763	1/2:77:0,41,36:0:0:41,36:1450,1288:-223.361,-105.324,-92.9813,-118.393,0,-107.556	1/1:101:0,101,0:0:0:101,0:3596,0:-323.36,-30.404,0,-323.36,-30.404,-323.36	1/2:47:0,26,21:0:0:26,21:926,752:-137.11,-61.6584,-53.8316,-75.8085,0,-69.4869	1/1:55:0,55,0:0:0:55,0:1929,0:-173.821,-16.5567,0,-173.821,-16.5567,-173.821	1/1:63:0,63,0:0:0:63,0:2219,0:-199.9,-18.9649,0,-199.9,-18.9649,-199.9	1/1:63:0,63,0:0:0:63,0:2224,0:-200.377,-18.9649,0,-200.377,-18.9649,-200.377	1/2:54:0,27,27:0:0:27,27:955,972:-157.359,-79.607,-71.4792,-78.1083,0,-69.9805	1/2:53:0,29,24:0:0:29,24:1018,845:-151.572,-68.7226,-59.9928,-82.8413,0,-75.6166	1/2:75:0,42,32:0:0:42,32:1473,1140:-212.624,-92.8879,-80.2447,-119.733,0,-110.1	1/2:60:0,22,38:0:0:22,38:766,1341:-171.671,-109.435,-102.813,-62.5849,0,-51.1457	1/1:32:0,32,0:0:0:32,0:1138,0:-102.695,-9.63296,0,-102.695,-9.63296,-102.695	1/1:221:0,221,0:0:0:221,0:7816,0:-703.353,-66.5276,0,-703.353,-66.5276,-703.353	1/1:86:0,86,0:0:0:86,0:3021,0:-271.972,-25.8886,0,-271.972,-25.8886,-271.972	1/2:140:0,74,65:0:0:74,65:2619,2313:-401.265,-187.975,-165.698,-213.357,0,-193.79	1/2:37:0,22,15:0:0:22,15:774,540:-107.38,-44.3863,-37.7637,-63.3499,0,-58.8345	1/1:104:0,102,0:0:0:102,0:3561,0:-320.299,-30.7051,0,-320.299,-30.7051,-320.299	1/1:96:0,95,0:0:0:95,0:3376,0:-303.607,-28.5979,0,-303.607,-28.5979,-303.607	1/1:288:0,286,0:0:0:286,0:10142,0:-911.776,-86.0946,0,-911.776,-86.0946,-911.776	1/2:173:0,94,79:0:0:94,79:3324,2810:-499.763,-229.225,-200.928,-270.892,0,-247.111	1/2:15:0,10,4:0:0:10,4:357,144:-40.937,-11.8219,-8.81158,-29.1844,0,-27.9803	1/1:253:0,251,0:0:0:251,0:8900,0:-800.018,-75.5585,0,-800.018,-75.5585,-800.018	1/1:141:0,139,0:0:0:139,0:4910,0:-441.638,-41.8432,0,-441.638,-41.8432,-441.638	1/2:124:0,67,56:0:0:67,56:2341,1985:-351.355,-161.122,-140.953,-190.224,0,-173.367	1/1:19:0,19,0:0:0:19,0:680,0:-61.5295,-5.71957,0,-61.5295,-5.71957,-61.5295	1/2:21:0,9,11:0:0:9,11:322,388:-57.8576,-31.5983,-28.889,-26.2662,0,-22.9549	1/2:20:0,10,10:0:0:10,10:356,360:-58.6558,-29.6705,-26.6602,-29.3426,0,-26.3323	1/1:11:0,11,0:0:0:11,0:394,0:-35.8016,-3.31133,0,-35.8016,-3.31133,-35.8016	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/2:164:0,92,72:0:0:92,72:3240,2592:-474.089,-211.269,-183.574,-263.176,0,-241.502	1/1:195:0,192,0:0:0:192,0:6787,0:-609.687,-57.7978,0,-609.687,-57.7978,-609.687	1/1:43:0,43,0:0:0:43,0:1523,0:-137.328,-12.9443,0,-137.328,-12.9443,-137.328	1/2:6:0,2,4:0:0:2,4:72,140:-17.6186,-11.7405,-11.1384,-6.23466,0,-5.03054	1/2:124:0,57,66:0:0:57,66:2017,2352:-355.072,-190.871,-173.712,-164.24,0,-144.372	1/1:35:0,34,0:0:0:34,0:1194,0:-107.415,-10.235,0,-107.415,-10.235,-107.415	1/2:96:0,57,39:0:0:57,39:2005,1372:-274.886,-112,-94.8414,-163.237,0,-151.497	1/2:52:0,32,20:0:0:32,20:1146,716:-152.121,-58.7153,-49.0823,-93.7637,0,-87.7431	1/2:71:0,39,32:0:0:39,32:1365,1148:-205,-93.996,-82.2558,-111.359,0,-101.726	1/2:91:0,49,41:0:0:49,41:1723,1465:-259.62,-119.412,-104.662,-140.203,0,-127.86	1/2:122:0,75,46:0:0:75,46:2649,1652:-349.867,-134.278,-111.701,-215.586,0,-201.739	1/1:192:0,190,0:0:0:190,0:6708,0:-602.883,-57.1957,0,-602.883,-57.1957,-602.883	1/1:187:0,186,1:0:0:186,1:6579,36:-591.395,-55.9916,0,-588.458,-52.6943,-588.157	1/2:185:0,104,81:0:0:104,81:3679,2912:-537.099,-237.767,-206.46,-299.689,0,-275.305	1/1:165:0,161,0:0:0:161,0:5668,0:-509.018,-48.4658,0,-509.018,-48.4658,-509.018	1/2:15:0,7,8:0:0:7,8:243,288:-43.6065,-23.8592,-21.752,-20.1003,0,-17.692	1/1:131:0,129,0:0:0:129,0:4584,0:-412.276,-38.8329,0,-412.276,-38.8329,-412.276	1/2:25:0,5,20:0:0:5,20:173,716:-72.7462,-58.6902,-57.185,-14.4042,0,-8.38358	1/2:22:0,11,10:0:0:11,10:372,345:-58.2944,-28.1388,-24.8274,-30.2615,0,-27.2512	1/1:131:0,128,0:0:0:128,0:4556,0:-409.791,-38.5318,0,-409.791,-38.5318,-409.791	1/2:30:0,10,20:0:0: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chr09	21730714	.	AACAAACAAACAAAACT	ATTTACACAAACAAAACT,AATAAACAAACAAAACT	148520	PASS	AB=0.507162,0.474761;ABP=4.31674,19.2327;AC=139,47;AF=0.747312,0.252688;AN=186;AO=5534,1400;CIGAR=1M3I2M2D12M,2M1X14M;DP=7053;DPB=7389.35;DPRA=0,0.831876;EPP=12019.9,3043.07;EPPR=9.52472;GTI=2;LEN=18,1;MEANALT=2.68817,3.09434;MQM=59.7073,59.9921;MQMR=60;NS=93;NUMALT=2;ODDS=4.83613;PAIRED=0,0;PAIREDR=0;PAO=15,1;PQA=382,35;PQR=35;PRO=1;QA=195259,50201;QR=107;RO=3;RPL=5534,1400;RPP=12019.9,3043.07;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=5534,1400;SAP=12019.9,3043.07;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23,0:0:0:23,0:817,0:-73.843,-6.92369,0,-73.843,-6.92369,-73.843	1/1:43:0,43,0:0:0:43,0:1523,0:-137.35,-12.9443,0,-137.35,-12.9443,-137.35	1/1:119:0,113,0:0:0:113,0:3990,0:-358.951,-34.0164,0,-358.951,-34.0164,-358.951	1/1:232:0,222,1:0:0:222,1:7784,36:-700.265,-66.8287,0,-697.328,-63.8869,-697.027	1/2:32:0,16,16:0:0:16,16:570,576:-93.8167,-47.3585,-42.542,-46.8161,0,-41.9997	1/2:13:0,6,4:0:0:6,4:216,144:-29.4151,-11.7801,-9.97391,-17.66,0,-16.4559	1/2:48:0,27,20:0:0:27,20:955,720:-136.515,-58.7483,-50.6205,-77.7645,0,-71.7439	1/2:72:0,41,30:0:0:41,30:1442,1080:-205.455,-88.1225,-75.7803,-117.329,0,-108.298	1/2:32:0,10,19:0:0:10,19:360,680:-84.8468,-55.4788,-52.4685,-29.3916,0,-23.672	1/1:49:0,49,0:0:0:49,0:1725,0:-155.448,-14.7505,0,-155.448,-14.7505,-155.448	1/2:55:2,28,24:2:72:28,24:997,864:-145.297,-64.6495,-62.0958,-75.398,0,-74.0486	1/1:98:0,97,0:0:0:97,0:3401,0:-305.901,-29.1999,0,-305.901,-29.1999,-305.901	1/1:100:0,99,0:0:0:99,0:3497,0:-314.383,-29.802,0,-314.383,-29.802,-314.383	1/1:58:1,56,0:1:35:56,0:1941,0:-171.478,-13.9895,0,-171.779,-16.8577,-174.627	1/2:92:0,46,45:0:0:46,45:1624,1616:-264.061,-131.824,-117.976,-132.233,0,-118.687	1/2:80:0,50,30:0:0:50,30:1744,1076:-229.958,-88.122,-73.0705,-142.191,0,-133.16	1/2:30:0,11,19:0:0:11,19:394,669:-86.9488,-54.8144,-51.503,-32.4902,0,-26.7707	1/2:23:0,12,11:0:0:12,11:431,396:-67.8303,-32.6714,-29.0591,-35.5183,0,-32.207	1/1:29:0,29,0:0:0:29,0:1032,0:-93.1854,-8.72987,0,-93.1854,-8.72987,-93.1854	1/1:318:0,314,0:0:0:314,0:11095,0:-998.144,-94.5234,0,-998.144,-94.5234,-998.144	1/1:72:0,70,0:0:0:70,0:2474,0:-222.599,-21.0721,0,-222.599,-21.0721,-222.599	1/2:144:0,53,87:0:0:53,87:1875,3117:-406.979,-254.268,-238.313,-152.766,0,-126.576	1/2:108:0,52,54:0:0:52,54:1844,1923:-306.99,-156.76,-141.106,-150.254,0,-133.998	1/1:31:0,30,0:0:0:30,0:1064,0:-95.7067,-9.0309,0,-95.7067,-9.0309,-95.7067	1/1:85:0,84,0:0:0:84,0:2946,0:-265.043,-25.2865,0,-265.043,-25.2865,-265.043	1/1:172:0,170,0:0:0:170,0:6002,0:-540.053,-51.1751,0,-540.053,-51.1751,-540.053	1/2:174:0,84,89:0:0:84,89:2953,3190:-500.308,-260.112,-234.826,-240.132,0,-213.34	1/2:39:0,20,18:0:0:20,18:700,648:-109.821,-52.8735,-46.8529,-56.943,0,-51.5245	1/1:280:0,275,0:0:0:275,0:9714,0:-873.824,-82.7833,0,-873.824,-82.7833,-873.824	1/1:89:0,89,0:0:0:89,0:3138,0:-282.617,-26.7917,0,-282.617,-26.7917,-282.617	1/2:80:0,39,40:0:0:39,40:1376,1440:-229.534,-117.497,-105.757,-112.034,0,-99.9925	1/1:6:0,6,0:0:0:6,0:216,0:-19.4224,-1.80618,0,-19.4224,-1.80618,-19.4224	1/2:14:0,6,8:0:0:6,8:216,288:-41.4837,-23.8592,-22.053,-17.9843,0,-15.5761	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:9:0,9,0:0:0:9,0:312,0:-28.4085,-2.70927,0,-28.4085,-2.70927,-28.4085	1/2:9:0,8,1:0:0:8,1:283,36:-26.3243,-3.27774,-0.869497,-23.404,0,-23.103	1/2:169:0,87,80:0:0:87,80:3095,2880:-487.224,-234.993,-208.804,-252.228,0,-228.146	1/1:100:0,99,0:0:0:99,0:3462,0:-311.133,-29.802,0,-311.133,-29.802,-311.133	1/1:56:0,55,0:0:0:55,0:1932,0:-173.813,-16.5567,0,-173.813,-16.5567,-173.813	.:.:.:.:.:.:.:.	1/2:75:0,46,28:0:0:46,28:1623,1008:-214.392,-82.2477,-68.4003,-132.142,0,-123.713	1/1:43:0,43,0:0:0:43,0:1520,0:-137.09,-12.9443,0,-137.09,-12.9443,-137.09	1/2:109:0,57,51:0:0:57,51:2026,1806:-312.229,-147.134,-129.976,-165.118,0,-149.766	1/2:48:0,20,27:0:0:20,27:703,972:-136.526,-79.3103,-73.2897,-57.2113,0,-49.0835	1/2:48:0,23,24:0:0:23,24:804,855:-135.164,-69.7601,-62.8364,-65.4703,0,-58.2456	1/2:71:0,35,36:0:0:35,36:1237,1262:-203.787,-103.041,-92.5053,-101.097,0,-90.2603	1/2:72:0,37,32:0:0:37,32:1304,1139:-199.005,-92.8503,-81.7122,-106.173,0,-96.5402	1/1:123:0,122,1:0:0:122,1:4324,36:-388.996,-36.7257,0,-386.059,-33.6783,-385.758	1/1:71:0,68,0:0:0:68,0:2387,0:-214.763,-20.47,0,-214.763,-20.47,-214.763	1/2:89:0,55,34:0:0:55,34:1965,1220:-260.07,-99.8718,-83.3151,-160.557,0,-150.322	1/1:66:0,64,0:0:0:64,0:2242,0:-201.731,-19.2659,0,-201.731,-19.2659,-201.731	1/2:12:0,5,7:0:0:5,7:179,252:-35.51,-20.9217,-19.4166,-14.9468,0,-12.8396	1/1:104:0,102,0:0:0:102,0:3600,0:-323.801,-30.7051,0,-323.801,-30.7051,-323.801	1/2:59:0,34,23:0:0:34,23:1213,828:-166.086,-67.5329,-57.2979,-98.5248,0,-91.6011	1/2:6:0,1,5:0:0:1,5:36,180:-17.9843,-15.0469,-14.7459,-3.29724,0,-1.79209	1/1:110:0,107,2:0:0:107,2:3776,72:-339.657,-32.2102,0,-333.782,-26.3176,-333.18	1/2:23:0,9,13:0:0:9,13:319,468:-64.3133,-38.3256,-35.6163,-26.1156,0,-22.202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chr09	21730825	.	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chr09	21750242	.	G	A	44619.8	PASS	AB=0.227048;ABP=2491.2;AC=133;AF=0.707447;AN=188;AO=2091;CIGAR=1X;DP=5143;DPB=5143;DPRA=0;EPP=4543.56;EPPR=6606.47;GTI=30;LEN=1;MEANALT=1.03191;MQM=47.7575;MQMR=59.9183;NS=94;NUMALT=1;ODDS=0.336277;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74379;QR=108105;RO=3049;RPL=907;RPP=82.6922;RPPR=26.3424;RPR=1184;RUN=1;SAF=907;SAP=82.6922;SAR=1184;SRF=1434;SRP=26.3424;SRR=1615;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:412:-36.8583,-3.61236,0	0/1:28:3,25:3:108:25:884:-70.9126,0,-1.64633	1/1:44:0,44:0:0:44:1572:-140.99,-13.2453,0	1/1:53:3,50:3:108:50:1771:-146.574,-5.87942,0	0/1:41:31,10:31:1112:10:356:-19.6473,0,-88.0491	0/1:38:33,5:33:1162:5:171:-4.16748,0,-93.4453	0/1:61:39,22:39:1389:22:792:-52.1792,0,-106.944	0/1:121:97,24:97:3444:24:860:-40.4243,0,-273.747	0/1:88:45,43:45:1592:43:1525:-107.191,0,-117.077	1/1:16:0,16:0:0:16:576:-51.61,-4.81648,0	0/1:72:62,10:62:2202:10:347:-9.75036,0,-176.77	1/1:23:0,23:0:0:23:819:-72.553,-6.92369,0	1/1:56:0,56:0:0:56:2008:-179.061,-16.8577,0	1/1:45:0,45:0:0:45:1616:-142.782,-13.5464,0	0/1:94:71,23:71:2541:23:806:-43.8218,0,-200.642	0/1:68:58,10:58:2017:10:356:-11.7067,0,-161.326	0/1:91:68,23:68:2400:23:815:-45.3591,0,-188.858	0/1:84:74,10:74:2602:10:337:-5.24478,0,-209.134	1/1:24:0,24:0:0:24:834:-74.822,-7.22472,0	1/1:13:0,13:0:0:13:466:-41.0361,-3.91339,0	1/1:36:0,36:0:0:36:1288:-115.188,-10.8371,0	0/1:48:41,7:41:1468:7:248:-8.07097,0,-117.967	0/1:79:60,19:60:2148:19:672:-36.4939,0,-169.806	1/1:21:0,21:0:0:21:756:-67.4064,-6.32163,0	1/1:20:0,20:0:0:20:712:-63.8572,-6.0206,0	1/1:67:2,65:2:72:65:2296:-197.199,-13.3323,0	0/1:195:158,37:158:5613:37:1313:-58.8775,0,-446.519	0/0:36:35,1:35:1244:1:32:0,-7.67025,-109.098	1/1:48:1,47:1:36:47:1672:-143.471,-10.8512,0	1/1:20:0,20:0:0:20:716:-64.297,-6.0206,0	0/1:74:62,12:62:2205:12:428:-16.3609,0,-176.437	1/1:8:0,8:0:0:8:284:-25.5503,-2.40824,0	0/0:21:20,1:20:720:1:36:0,-2.73515,-61.5423	0/1:8:4,4:4:144:4:135:-9.99147,0,-10.9054	1/1:6:0,6:0:0:6:216:-19.5724,-1.80618,0	0/1:18:10,8:10:360:8:284:-20.2669,0,-27.3258	0/1:183:147,35:147:5220:35:1248:-55.8843,0,-414.793	1/1:25:0,25:0:0:25:870:-78.0047,-7.52575,0	1/1:18:0,18:0:0:18:635:-57.1161,-5.41854,0	1/1:5:0,5:0:0:5:180:-16.393,-1.50515,0	0/1:116:97,19:97:3461:19:680:-26.2408,0,-276.782	1/1:23:0,23:0:0:23:809:-71.9305,-6.92369,0	0/1:146:117,28:117:4131:28:996:-45.0124,0,-327.949	0/1:87:72,15:72:2546:15:532:-21.6189,0,-203.201	0/1:55:44,11:44:1537:11:396:-18.6216,0,-122.063	0/1:68:60,8:60:2147:8:288:-5.39388,0,-173.027	0/1:78:55,23:55:1962:23:796:-48.1187,0,-153.371	1/1:53:4,49:4:144:49:1737:-141.829,-2.64097,0	1/1:12:0,12:0:0:12:432:-38.7729,-3.61236,0	0/1:147:117,30:117:4165:30:1060:-49.0541,0,-330.753	1/1:15:0,15:0:0:15:523:-46.9052,-4.51545,0	0/1:20:7,13:7:248:13:468:-35.9459,0,-16.6436	1/1:42:0,42:0:0:42:1500:-134.481,-12.6433,0	0/1:62:44,18:44:1546:18:644:-39.0713,0,-120.766	0/0:12:11,1:11:392:1:36:0,-0.0537426,-32.0614	1/1:21:0,21:0:0:21:740:-66.1926,-6.32163,0	0/1:55:46,9:46:1631:9:316:-11.9618,0,-130.52	0/1:16:11,5:11:388:5:180:-11.4974,0,-30.4409	0/1:5:2,3:2:72:3:104:-8.05749,0,-5.33157	0/1:86:74,12:74:2617:12:428:-12.8161,0,-209.885	1/1:41:0,41:0:0:41:1468:-130.815,-12.3422,0	0/1:21:18,3:18:617:3:108:-3.61421,0,-49.5281	0/1:114:88,26:88:3126:26:923:-48.3662,0,-247.249	1/1:40:2,38:2:72:38:1368:-114.976,-5.20448,0	0/1:67:58,8:58:2066:8:288:-5.8631,0,-166.094	1/1:9:0,9:0:0:9:320:-28.8641,-2.70927,0	0/1:164:125,39:125:4416:39:1396:-75.2895,0,-347.467	1/1:21:0,21:0:0:21:737:-65.7741,-6.32163,0	1/1:16:1,15:1:36:15:536:-44.7288,-1.21821,0	1/1:26:0,26:0:0:26:932:-83.7252,-7.82678,0	0/1:97:85,12:85:3024:12:424:-8.71993,0,-243.192	0/1:24:18,6:18:644:6:216:-12.3554,0,-51.0659	1/1:18:0,18:0:0:18:648:-57.4907,-5.41854,0	0/1:94:63,31:63:2245:31:1108:-70.7489,0,-174.014	1/1:48:0,48:0:0:48:1710:-153.06,-14.4494,0	1/1:55:0,55:0:0:55:1972:-176.499,-16.5567,0	0/1:112:94,18:94:3337:18:630:-23.118,0,-266.83	1/1:32:0,32:0:0:32:1135:-101.967,-9.63296,0	0/1:24:17,7:17:608:7:252:-15.6344,0,-47.8273	0/1:100:82,18:82:2913:18:640:-27.3965,0,-232.302	0/1:90:69,21:69:2454:21:756:-39.8212,0,-193.693	1/1:47:0,47:0:0:47:1684:-149.929,-14.1484,0	1/1:31:1,30:1:36:30:1076:-92.4273,-5.73366,0	1/1:37:0,37:0:0:37:1328:-118.961,-11.1381,0	0/1:102:77,25:77:2723:25:892:-49.4826,0,-214.604	0/1:60:11,49:11:392:49:1734:-136.92,0,-17.5583	0/1:46:40,6:40:1404:6:216:-5.77472,0,-112.806	0/1:68:58,10:58:2052:10:352:-11.3085,0,-164.478	1/1:11:0,11:0:0:11:387:-34.9435,-3.31133,0	0/1:85:64,21:64:2258:21:743:-41.1973,0,-177.872	0/1:140:101,39:101:3525:39:1400:-83.2869,0,-275.314	0/1:105:92,13:92:3263:13:464:-9.21079,0,-262.263	1/1:28:0,28:0:0:28:991:-86.8782,-8.42884,0	1/1:43:0,43:0:0:43:1536:-136.971,-12.9443,0
chr09	21750263	.	C	T	50602.7	PASS	AB=0.232552;ABP=2388.76;AC=133;AF=0.707447;AN=188;AO=2142;CIGAR=1X;DP=5169;DPB=5169;DPRA=0;EPP=1211.88;EPPR=1787.05;GTI=26;LEN=1;MEANALT=1;MQM=47.6811;MQMR=59.9336;NS=94;NUMALT=1;ODDS=0.00903788;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76237;QR=106995;RO=3027;RPL=1477;RPP=671.426;RPPR=1209.77;RPR=665;RUN=1;SAF=952;SAP=60.4337;SAR=1190;SRF=1437;SRP=19.8032;SRR=1590;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:356:-31.5715,-3.0103,0	0/1:28:3,25:3:108:25:877:-70.2334,0,-1.64633	1/1:43:0,43:0:0:43:1548:-138.793,-12.9443,0	1/1:54:3,51:3:108:51:1807:-150.75,-6.18045,0	0/1:39:30,9:30:1068:9:324:-17.3922,0,-84.6919	0/1:38:33,5:33:1160:5:171:-4.19191,0,-93.2666	0/1:61:37,24:37:1308:24:847:-57.1064,0,-99.6587	0/1:127:100,27:100:3502:27:964:-47.7603,0,-277.162	0/1:91:47,44:47:1655:44:1563:-110.554,0,-121.843	1/1:17:0,17:0:0:17:612:-54.8036,-5.11751,0	0/1:71:62,9:62:2179:9:315:-7.17592,0,-175.001	1/1:24:0,24:0:0:24:860:-76.1977,-7.22472,0	1/1:56:0,56:0:0:56:2003:-178.633,-16.8577,0	1/1:48:0,48:0:0:48:1705:-150.952,-14.4494,0	0/1:94:70,24:70:2479:24:849:-47.3999,0,-195.065	0/1:68:58,10:58:2072:10:352:-11.3356,0,-166.273	0/1:94:69,25:69:2443:25:887:-50.9137,0,-191.824	0/1:84:73,11:73:2593:11:392:-10.1311,0,-208.325	1/1:26:0,26:0:0:26:905:-81.1451,-7.82678,0	1/1:13:0,13:0:0:13:464:-41.4711,-3.91339,0	1/1:38:0,38:0:0:38:1351:-120.846,-11.4391,0	0/1:46:39,7:39:1368:7:252:-9.02949,0,-109.568	0/1:81:62,19:62:2187:19:672:-35.91,0,-172.713	1/1:21:0,21:0:0:21:737:-65.7598,-6.32163,0	1/1:20:0,20:0:0:20:689:-61.8065,-6.0206,0	1/1:70:2,68:2:72:68:2432:-209.123,-14.2354,0	0/1:197:158,39:158:5566:39:1396:-65.3388,0,-441.736	0/0:36:35,1:35:1244:1:36:0,-7.31607,-108.744	1/1:50:0,50:0:0:50:1771:-155.776,-15.0515,0	1/1:21:0,21:0:0:21:737:-66.1238,-6.32163,0	0/1:74:61,13:61:2162:13:464:-19.5891,0,-172.57	1/1:9:0,9:0:0:9:306:-27.5227,-2.70927,0	0/0:21:20,1:20:707:1:36:0,-2.73515,-60.3681	0/1:8:4,4:4:135:4:144:-10.8153,0,-10.0743	1/1:6:0,6:0:0:6:216:-19.5724,-1.80618,0	0/1:17:10,7:10:356:7:244:-17.0081,0,-27.2637	0/1:179:142,37:142:5019:37:1328:-64.319,0,-397.977	1/1:24:0,24:0:0:24:860:-76.9775,-7.22472,0	1/1:18:0,18:0:0:18:648:-58.2549,-5.41854,0	1/1:5:0,5:0:0:5:180:-16.393,-1.50515,0	0/1:117:97,20:97:3442:20:716:-29.1696,0,-274.774	1/1:23:0,23:0:0:23:813:-72.2849,-6.92369,0	0/1:145:117,28:117:4129:28:995:-45.2352,0,-328.138	0/1:87:71,16:71:2478:16:576:-25.528,0,-197.086	0/1:56:45,11:45:1596:11:387:-17.5158,0,-127.073	0/1:68:60,8:60:2109:8:284:-5.04043,0,-169.605	0/1:76:54,22:54:1919:22:779:-47.1027,0,-150.106	1/1:53:4,49:4:140:49:1737:-141.995,-3.01001,0	1/1:15:0,15:0:0:15:536:-48.0498,-4.51545,0	0/1:147:117,30:117:4119:30:1057:-48.6122,0,-326.616	1/1:15:0,15:0:0:15:523:-46.8925,-4.51545,0	0/1:20:7,13:7:252:13:468:-35.9773,0,-17.0084	1/1:43:0,43:0:0:43:1540:-138.023,-12.9443,0	0/1:56:39,17:39:1373:17:608:-37.6727,0,-107.009	0/0:12:11,1:11:388:1:36:0,-0.0537426,-31.6987	1/1:22:0,22:0:0:22:773:-69.0873,-6.62266,0	0/1:55:46,9:46:1610:9:324:-12.6356,0,-128.629	0/1:17:11,6:11:392:6:212:-14.0463,0,-30.5025	0/1:6:2,4:2:72:4:144:-10.9551,0,-5.03054	0/1:81:68,13:68:2397:13:464:-17.5494,0,-191.603	1/1:41:0,41:0:0:41:1464:-130.603,-12.3422,0	0/1:22:18,4:18:636:4:144:-6.50685,0,-50.9454	0/1:113:88,25:88:3120:25:884:-45.2317,0,-247.01	1/1:37:2,35:2:72:35:1256:-104.999,-4.30139,0	0/1:65:58,7:58:2025:7:252:-3.18783,0,-162.907	1/1:9:0,9:0:0:9:324:-29.201,-2.70927,0	0/1:164:124,40:124:4419:40:1423:-77.8757,0,-348.515	1/1:21:0,21:0:0:21:748:-66.7205,-6.32163,0	1/1:17:1,16:1:36:16:568:-47.5873,-1.51924,0	1/1:28:0,28:0:0:28:999:-88.2651,-8.42884,0	0/1:96:82,14:82:2909:14:504:-15.9108,0,-232.989	0/1:26:20,6:20:704:6:216:-11.7534,0,-55.8578	1/1:16:0,16:0:0:16:568:-50.3692,-4.81648,0	0/1:97:65,32:65:2277:32:1148:-73.2018,0,-175.977	1/1:49:0,49:0:0:49:1756:-157.169,-14.7505,0	1/1:58:0,58:0:0:58:2064:-184.718,-17.4597,0	0/1:111:94,17:94:3330:17:604:-21.083,0,-266.502	1/1:35:1,34:1:36:34:1196:-103.822,-6.93778,0	0/1:24:17,7:17:608:7:252:-15.6344,0,-47.8273	0/1:96:76,20:76:2699:20:712:-35.0121,0,-214.256	0/1:94:71,23:71:2487:23:814:-44.5042,0,-195.62	1/1:50:0,50:0:0:50:1792:-159.442,-15.0515,0	1/1:32:1,31:1:36:31:1104:-94.9349,-6.03469,0	1/1:37:0,37:0:0:37:1328:-118.867,-11.1381,0	0/1:102:77,25:77:2734:25:896:-49.8351,0,-215.595	0/1:60:12,48:12:423:48:1689:-133.046,0,-20.3433	0/1:47:41,6:41:1459:6:216:-5.47369,0,-117.455	0/1:67:57,10:57:2036:10:360:-12.3258,0,-163.342	1/1:12:0,12:0:0:12:432:-38.5828,-3.61236,0	0/1:83:63,20:63:2219:20:720:-39.7311,0,-174.985	0/1:138:99,39:99:3491:39:1395:-83.382,0,-272.86	0/1:107:93,14:93:3332:14:491:-11.5679,0,-267.887	1/1:28:0,28:0:0:28:999:-87.5645,-8.42884,0	1/1:46:0,46:0:0:46:1647:-146.563,-13.8474,0
chr09	21853617	.	C	T	116194	PASS	AB=0.397226;ABP=366.78;AC=134;AF=0.712766;AN=188;AO=5561;CIGAR=1X;DP=7989;DPB=7989;DPRA=0;EPP=12069.9;EPPR=5096.55;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.9914;MQMR=59.9744;NS=94;NUMALT=1;ODDS=0.793791;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199119;QR=86558;RO=2425;RPL=5560;RPP=12069.9;RPPR=5096.55;RPR=1;RUN=1;SAF=5561;SAP=12078.6;SAR=0;SRF=2425;SRP=5268.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:138:0,138:0:0:138:4955:-446.097,-41.5421,0	1/1:123:0,123:0:0:123:4401:-396.261,-37.0267,0	1/1:195:0,195:0:0:195:6967:-627.095,-58.7009,0	0/1:124:66,58:66:2359:58:2088:-150.862,0,-175.24	0/1:89:44,45:44:1584:45:1620:-119.29,0,-116.004	0/1:124:74,50:74:2656:50:1796:-124.595,0,-201.958	0/1:203:130,73:130:4618:73:2607:-173.769,0,-354.674	0/1:39:30,9:30:1080:9:324:-17.7657,0,-85.7731	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	0/1:18:7,11:7:252:11:388:-29.8383,0,-17.6104	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:19:15,4:15:531:4:144:-7.59405,0,-42.3738	0/1:19:14,5:14:491:5:180:-10.8325,0,-38.8015	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:192:0,192:0:0:192:6879:-619.176,-57.7978,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	0/1:175:121,54:121:4331:54:1933:-121.565,0,-337.278	0/1:52:30,22:30:1052:22:792:-55.9521,0,-79.3342	1/1:118:0,118:0:0:118:4232:-381.059,-35.5215,0	1/1:126:0,126:0:0:126:4491:-404.359,-37.9298,0	1/1:319:0,319:0:0:319:11435:-1029.02,-96.0286,0	0/1:171:98,73:98:3512:73:2628:-185.29,0,-264.814	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:226:0,226:0:0:226:8073:-726.584,-68.0328,0	1/1:160:1,159:1:36:159:5698:-509.339,-44.5665,0	0/1:179:112,67:112:4007:67:2412:-163.451,0,-306.934	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/1:20:13,7:13:468:7:248:-16.6436,0,-36.439	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:43:28,15:28:995:15:540:-35.9922,0,-76.9197	1/1:255:0,255:0:0:255:9152:-823.649,-76.7627,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:240:135,105:135:4828:105:3764:-266.712,0,-362.426	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:194:106,88:106:3791:88:3147:-225.055,0,-282.988	0/0:17:16,1:16:557:1:32:0,-1.92608,-47.2641	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:151:74,76:74:2637:76:2720:-199.529,0,-192.061	0/1:159:95,63:95:3383:63:2260:-155.779,0,-256.803	1/1:179:2,177:2:68:177:6321:-562.509,-47.4267,0	1/1:95:0,95:0:0:95:3414:-307.473,-28.5979,0	0/1:160:113,47:113:4031:47:1677:-103.051,0,-314.811	1/1:130:0,130:0:0:130:4656:-419.201,-39.1339,0	0/0:13:12,1:12:432:1:36:0,-0.315115,-35.6229	1/1:160:0,160:0:0:160:5736:-516.356,-48.1648,0	0/1:75:43,32:43:1533:32:1152:-81.4129,0,-115.684	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	1/1:91:0,91:0:0:91:3248:-292.539,-27.3937,0	0/1:31:15,16:15:532:16:576:-42.8431,0,-38.8812	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:19:13,6:13:464:6:212:-13.7052,0,-36.3779	0/1:138:74,63:74:2638:63:2260:-162.209,0,-196.213	1/1:39:0,39:0:0:39:1380:-124.497,-11.7402,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:187:102,85:102:3607:85:3028:-216.456,0,-268.541	1/1:217:2,215:2:68:215:7710:-687.472,-58.8658,0	0/1:104:79,25:79:2814:25:888:-48.9319,0,-222.192	1/1:66:0,66:0:0:66:2357:-212.387,-19.868,0	0/1:235:148,87:148:5278:87:3118:-210.104,0,-404.415	1/1:127:4,123:4:144:123:4420:-384.656,-24.9172,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:102:64,38:64:2292:38:1360:-91.9955,0,-175.836	0/1:43:29,14:29:1025:14:496:-32.0294,0,-79.6164	0/1:33:18,15:18:644:15:528:-37.9168,0,-48.3566	1/1:118:0,118:0:0:118:4204:-378.54,-35.5215,0	0/1:44:29,15:29:1040:15:540:-35.6912,0,-80.669	1/1:162:0,162:0:0:162:5808:-522.832,-48.7669,0	1/1:119:0,119:0:0:119:4262:-383.758,-35.8226,0	0/1:250:147,103:147:5276:103:3676:-255.785,0,-399.698	1/1:62:1,61:1:36:61:2196:-194.307,-15.0656,0	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/1:111:66,45:66:2355:45:1598:-110.694,0,-178.794	0/1:135:78,57:78:2778:57:2048:-143.953,0,-209.621	1/1:175:0,175:0:0:175:6239:-561.606,-52.6803,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:19:15,4:15:536:4:144:-7.59405,0,-42.8552	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:24:16,8:16:576:8:284:-18.6786,0,-44.9503	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:19:17,2:17:599:2:72:-1.11715,0,-48.5185	0/1:46:30,16:30:1072:16:576:-38.3276,0,-82.9451	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:10:0,10:0:0:10:341:-31.0178,-3.0103,0
chr09	21858414	.	C	T	13187.3	PASS	AB=0.274879;ABP=3183.43;AC=50;AF=0.265957;AN=188;AO=2000;CIGAR=1X;DP=13290;DPB=13290;DPRA=1.12412;EPP=4345.96;EPPR=23989.5;GTI=13;LEN=1;MEANALT=1.12281;MQM=31.938;MQMR=58.7483;NS=94;NUMALT=1;ODDS=2.04201;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71404;QR=403335;RO=11277;RPL=2000;RPP=4345.96;RPPR=23989.5;RPR=0;RUN=1;SAF=0;SAP=4345.96;SAR=2000;SRF=0;SRP=24490.7;SRR=11277;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.264	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:199:199,0:199:7121:0:0:0,-59.905,-640.481	0/0:209:209,0:209:7476:0:0:0,-62.9153,-671.483	0/1:202:137,64:137:4924:64:2270:-113.465,0,-382.137	0/1:79:60,19:60:2141:19:684:-28.4685,0,-169.009	0/1:56:37,19:37:1308:19:676:-35.399,0,-100.668	0/1:353:256,97:256:9139:97:3458:-158.247,0,-715.198	0/1:211:153,58:153:5462:58:2031:-92.2867,0,-426.796	0/0:130:129,0:129:4628:0:0:0,-38.8329,-416.226	0/1:110:95,15:95:3404:15:536:-8.36731,0,-273.241	0/0:137:137,0:137:4902:0:0:0,-41.2411,-440.421	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.601	0/0:88:88,0:88:3148:0:0:0,-26.4906,-282.803	0/1:152:102,50:102:3660:50:1796:-90.9937,0,-283.477	0/1:116:89,27:89:3200:27:972:-38.8775,0,-252.874	0/1:51:31,20:31:1116:20:720:-39.7972,0,-85.3992	0/1:49:31,18:31:1112:18:648:-35.1182,0,-85.5959	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.762	0/0:195:194,0:194:6922:0:0:0,-58.3998,-622.092	0/0:301:301,0:301:10749:0:0:0,-90.61,-964.688	0/1:226:130,96:130:4676:96:3403:-192.259,0,-351.884	0/1:185:130,55:130:4645:55:1957:-94.5068,0,-360.464	0/0:79:79,0:79:2836:0:0:0,-23.7814,-254.754	0/0:117:117,0:117:4192:0:0:0,-35.2205,-377.114	0/0:406:406,0:406:14496:0:0:0,-122.218,-1302.87	0/1:476:334,142:334:11964:142:5074:-243.656,0,-932.364	0/1:58:45,13:45:1616:13:460:-18.3016,0,-128.27	0/0:304:303,0:303:10868:0:0:0,-91.2121,-974.776	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.632	0/1:180:129,50:129:4594:50:1800:-82.5682,0,-358.927	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:40:24,16:24:852:16:572:-32.1087,0,-64.9142	0/1:13:10,3:10:360:3:108:-4.63932,0,-28.8263	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5063	0/1:38:29,9:29:1040:9:309:-12.5701,0,-82.2341	0/1:325:235,89:235:8402:89:3192:-146.185,0,-656.268	0/0:114:114,0:114:4088:0:0:0,-34.3174,-367.886	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.169	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:158:109,48:109:3889:48:1709:-83.4781,0,-302.002	0/0:35:35,0:35:1260:0:0:0,-10.536,-112.581	0/1:354:263,90:263:9436:90:3221:-139.938,0,-741.83	0/1:115:77,38:77:2734:38:1360:-69.5052,0,-211.543	0/1:103:64,39:64:2296:39:1396:-76.2331,0,-175.762	0/1:268:201,67:201:7200:67:2397:-101.83,0,-567.088	0/1:244:170,74:170:6039:74:2645:-128.523,0,-469.689	0/0:241:239,2:239:8532:2:72:0,-66.7446,-761.669	0/0:97:97,0:97:3441:0:0:0,-29.1999,-309.545	0/1:221:161,60:161:5780:60:2115:-95.2014,0,-453.446	0/0:181:181,0:181:6497:0:0:0,-54.4864,-583.318	0/1:21:18,3:18:648:3:108:-2.23108,0,-52.2852	0/0:108:108,0:108:3888:0:0:0,-32.5112,-349.886	0/1:68:52,16:52:1868:16:576:-23.8208,0,-147.929	0/1:17:15,2:15:540:2:72:-0.686112,0,-43.819	0/0:234:233,0:233:8285:0:0:0,-70.14,-743.193	0/1:84:60,24:60:2141:24:864:-40.9969,0,-167.4	0/0:15:14,1:14:504:1:32:0,-1.61634,-42.5297	0/1:48:38,10:38:1349:10:345:-12.4482,0,-107.125	0/1:154:115,37:115:4101:37:1328:-55.7724,0,-322.74	0/0:100:100,0:100:3572:0:0:0,-30.103,-321.101	0/1:16:13,3:13:464:3:108:-3.73623,0,-37.2624	0/1:310:256,54:256:9153:54:1929:-54.5461,0,-730.214	0/0:168:168,0:168:6010:0:0:0,-50.573,-540.302	0/1:124:107,17:107:3844:17:612:-9.71216,0,-308.497	0/0:129:128,0:128:4585:0:0:0,-38.5318,-412.451	0/1:370:274,96:274:9785:96:3410:-150.942,0,-768.657	0/0:202:200,2:200:7150:2:72:0,-55.0044,-636.496	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:59:36,23:36:1296:23:828:-45.7736,0,-98.9379	0/1:65:45,20:45:1608:20:720:-35.7202,0,-124.533	0/1:61:41,20:41:1468:20:720:-36.9243,0,-113.563	0/0:197:195,2:195:6947:2:72:0,-53.4993,-618.924	0/1:145:120,25:120:4285:25:900:-24.7853,0,-341.944	0/0:176:176,0:176:6277:0:0:0,-52.9813,-563.095	0/0:201:201,0:201:7216:0:0:0,-60.507,-648.616	0/1:182:127,55:127:4556:55:1976:-96.5109,0,-354.415	0/0:141:135,5:135:4833:5:176:0,-28.5824,-420.915	0/1:29:23,6:23:820:6:216:-8.07009,0,-64.8102	0/1:231:181,50:181:6504:50:1762:-66.1599,0,-515.518	0/1:259:188,71:188:6718:71:2537:-115.827,0,-525.365	0/0:337:336,1:336:12029:1:32:0,-98.2683,-1077.85	0/0:67:66,1:66:2332:1:36:0,-16.6205,-205.888	0/0:89:89,0:89:3188:0:0:0,-26.7917,-286.298	0/1:117:83,34:83:2972:34:1220:-58.4135,0,-232.153	0/0:169:169,0:169:5991:0:0:0,-50.8741,-538.887	0/1:24:17,7:17:612:7:252:-12.3243,0,-48.0535	0/1:92:69,23:69:2464:23:828:-35.7729,0,-193.889	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.67	0/1:71:52,19:52:1849:19:684:-31.1649,0,-145.039	0/1:144:96,48:96:3433:48:1724:-88.1059,0,-265.555	0/1:151:104,47:104:3711:47:1684:-83.4892,0,-288.422	0/0:191:191,0:191:6825:0:0:0,-57.4967,-613.254	0/0:149:149,0:149:5332:0:0:0,-44.8535,-479.706
chr09	21869182	.	A	G	17148.2	PASS	AB=0.426759;ABP=131.516;AC=49;AF=0.263441;AN=186;AO=1182;CIGAR=1X;DP=6183;DPB=6183;DPRA=0.765783;EPP=2569.69;EPPR=4.62599;GTI=7;LEN=1;MEANALT=1;MQM=50.2047;MQMR=50.3973;NS=93;NUMALT=1;ODDS=0.806336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41419;QR=177672;RO=5001;RPL=0;RPP=2569.69;RPPR=10862.5;RPR=1182;RUN=1;SAF=0;SAP=2569.69;SAR=1182;SRF=2531;SRP=4.62599;SRR=2470;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:792:0:0:0,-6.62266,-69.1172	0/0:88:88,0:88:3151:0:0:0,-26.4906,-278.663	0/0:81:81,0:81:2904:0:0:0,-24.3834,-251.623	0/0:109:109,0:109:3866:0:0:0,-32.8123,-345.879	0/1:29:21,8:21:731:8:284:-16.9152,0,-56.3751	0/1:12:9,3:9:324:3:108:-6.31909,0,-25.1847	0/1:74:47,27:47:1636:27:959:-64.1425,0,-123.962	0/1:86:34,52:34:1207:52:1811:-135.385,0,-80.0481	0/1:51:27,24:27:959:24:847:-59.6651,0,-69.4784	0/0:72:72,0:72:2555:0:0:0,-21.6742,-227.78	0/1:70:53,17:53:1904:17:584:-31.1622,0,-147.988	0/0:107:107,0:107:3774:0:0:0,-32.2102,-329.722	0/0:143:143,0:143:5068:0:0:0,-43.0473,-443.851	0/0:116:116,0:116:4085:0:0:0,-34.9195,-359.587	0/1:67:45,22:45:1589:22:775:-49.6739,0,-121.659	0/1:77:47,30:47:1675:30:1067:-71.821,0,-124.871	0/1:74:62,12:62:2211:12:419:-15.6235,0,-171.393	0/1:72:58,14:58:2041:14:491:-22.5016,0,-157.128	0/0:77:77,0:77:2764:0:0:0,-23.1793,-241.301	0/0:85:85,0:85:3028:0:0:0,-25.5875,-270.304	0/0:107:107,0:107:3820:0:0:0,-32.2102,-339.495	0/1:17:5,12:5:171:12:423:-33.1866,0,-10.535	0/1:35:16,19:16:572:19:657:-48.6315,0,-40.7704	0/0:59:59,0:59:2083:0:0:0,-17.7608,-181.534	0/0:30:30,0:30:1076:0:0:0,-9.0309,-95.5753	0/0:114:114,0:114:4057:0:0:0,-34.3174,-363.254	0/1:127:39,88:39:1392:88:3105:-239.538,0,-84.6096	0/1:52:37,15:37:1324:15:532:-32.1755,0,-100.255	0/0:93:93,0:93:3270:0:0:0,-27.9958,-292.075	0/0:38:38,0:38:1344:0:0:0,-11.4391,-118.158	0/1:53:35,18:35:1256:18:623:-40.3178,0,-93.8552	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1792	0/1:9:6,3:6:216:3:108:-7.34671,0,-16.9056	0/1:3:2,1:2:68:1:36:-2.69008,0,-5.3883	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.3791	0/1:7:2,5:2:72:5:180:-14.4214,0,-4.56262	0/1:179:117,62:117:4156:62:2170:-140.749,0,-317.235	0/0:21:21,0:21:748:0:0:0,-6.32163,-66.3718	0/0:100:100,0:100:3575:0:0:0,-30.103,-311.643	0/1:2:1,1:1:36:1:32:-2.57671,0,-2.99621	0/1:90:39,51:39:1377:51:1791:-133.61,0,-94.5224	0/0:70:69,1:69:2439:1:32:0,-17.8755,-213.325	0/1:70:18,52:18:644:52:1828:-141.385,0,-36.7569	0/1:78:50,28:50:1779:28:960:-62.9968,0,-134.045	0/1:59:45,14:45:1578:14:475:-25.2295,0,-122.94	0/1:42:26,16:26:924:16:555:-37.5235,0,-69.8428	0/1:42:19,23:19:671:23:803:-57.6114,0,-47.0337	0/0:75:75,0:75:2652:0:0:0,-22.5772,-236.182	0/0:41:41,0:41:1460:0:0:0,-12.3422,-130.094	0/1:79:36,43:36:1284:43:1486:-109.884,0,-90.9316	0/0:77:75,2:75:2667:2:72:0,-16.3598,-230.705	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6756	0/0:65:65,0:65:2313:0:0:0,-19.5669,-203.466	0/1:32:22,10:22:773:10:360:-23.029,0,-59.2656	0/1:6:5,1:5:180:1:36:-1.78699,0,-14.4236	0/0:61:61,0:61:2138:0:0:0,-18.3628,-188.541	0/1:14:11,3:11:396:3:108:-5.83542,0,-31.5246	.:.:.:.:.:.:.:.	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.3884	0/1:47:24,23:24:860:23:812:-58.398,0,-62.3997	0/0:150:150,0:150:5346:0:0:0,-45.1545,-475.487	0/1:4:1,3:1:36:3:108:-8.84572,0,-2.332	0/1:107:29,78:29:1019:78:2729:-212.132,0,-59.4528	0/0:87:87,0:87:3088:0:0:0,-26.1896,-274.969	0/1:63:37,26:37:1306:26:928:-64.3417,0,-97.2832	0/0:43:43,0:43:1510:0:0:0,-12.9443,-134.925	0/1:94:33,61:33:1154:61:2132:-163.17,0,-74.8702	0/0:46:46,0:46:1631:0:0:0,-13.8474,-144.426	0/0:57:57,0:57:2031:0:0:0,-17.1587,-179.502	0/1:35:21,14:21:743:14:489:-33.6196,0,-54.8113	0/1:93:74,19:74:2652:19:668:-31.9573,0,-207.359	0/1:11:8,3:8:284:3:108:-6.73851,0,-22.4786	0/0:38:37,1:37:1310:1:32:0,-8.25608,-111.93	0/1:57:28,29:28:995:29:1023:-74.6494,0,-70.2816	0/0:116:116,0:116:4120:0:0:0,-34.9195,-362.608	0/0:90:90,0:90:3207:0:0:0,-27.0927,-286.057	0/1:45:30,15:30:1072:15:528:-33.8564,0,-81.015	0/0:59:59,0:59:2096:0:0:0,-17.7608,-185.485	0/1:4:3,1:3:108:1:36:-2.39045,0,-8.54499	0/1:74:35,39:35:1252:39:1336:-97.5093,0,-89.8443	0/1:75:28,47:28:1008:47:1630:-122.73,0,-66.2602	0/0:117:117,0:117:4147:0:0:0,-35.2205,-368.392	0/0:126:126,0:126:4472:0:0:0,-37.9298,-396.895	0/0:99:99,0:99:3544:0:0:0,-29.802,-313.921	0/1:91:75,16:75:2652:16:559:-23.1317,0,-209.368	0/0:171:170,1:170:6052:1:36:0,-47.8869,-535.919	0/1:35:23,12:23:828:12:428:-27.5541,0,-63.1105	0/1:84:53,31:53:1887:31:1092:-72.5202,0,-140.494	0/0:100:100,0:100:3521:0:0:0,-30.103,-310.301	0/1:79:57,22:57:2040:22:779:-46.2818,0,-156.048	0/1:103:62,41:62:2209:41:1434:-97.0543,0,-162.936	0/1:49:26,23:26:928:23:815:-58.7185,0,-68.3662	0/0:101:101,0:101:3562:0:0:0,-30.404,-319.57	0/0:149:149,0:149:5339:0:0:0,-44.8535,-475.41
chr09	21869486	.	C	A	126912	PASS	AB=0.485564;ABP=9.53075;AC=139;AF=0.739362;AN=188;AO=5965;CIGAR=1X;DP=7824;DPB=7824;DPRA=0;EPP=12955.8;EPPR=4039.78;GTI=2;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=0.607534;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213660;QR=66593;RO=1859;RPL=0;RPP=12955.8;RPPR=4039.78;RPR=5965;RUN=1;SAF=5965;SAP=12955.8;SAR=0;SRF=1859;SRP=4039.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:79:0,79:0:0:79:2824:-254.399,-23.7814,0	1/1:251:0,251:0:0:251:8899:-800.894,-75.5585,0	1/1:126:0,126:0:0:126:4516:-406.607,-37.9298,0	0/1:23:9,14:9:320:14:500:-38.4125,0,-22.2187	0/1:47:27,20:27:964:20:720:-50.9804,0,-72.9284	0/1:134:71,63:71:2552:63:2253:-162.693,0,-189.592	0/1:116:60,56:60:2124:56:2004:-145.714,0,-156.507	0/1:107:46,61:46:1648:61:2196:-165.695,0,-116.398	1/1:91:0,91:0:0:91:3272:-294.699,-27.3937,0	0/1:100:54,46:54:1929:46:1648:-118.506,0,-143.782	1/1:105:0,105:0:0:105:3780:-340.397,-31.6082,0	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:96:0,96:0:0:96:3447:-310.441,-28.8989,0	0/1:65:39,26:39:1400:26:936:-64.9925,0,-106.732	0/1:59:21,38:21:756:38:1368:-105.66,0,-50.6065	0/1:70:41,29:41:1468:29:1044:-73.2027,0,-111.344	0/1:32:18,14:18:648:14:496:-35.3413,0,-49.0189	1/1:44:0,44:0:0:44:1569:-141.5,-13.2453,0	1/1:93:0,93:0:0:93:3348:-301.535,-27.9958,0	1/1:142:0,142:0:0:142:5069:-456.352,-42.7463,0	0/1:60:43,17:43:1536:17:608:-36.9902,0,-120.471	0/1:86:48,38:48:1724:38:1364:-97.1721,0,-129.557	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	1/1:105:0,105:0:0:105:3761:-338.687,-31.6082,0	1/1:188:0,188:0:0:188:6745:-607.12,-56.5936,0	0/1:289:153,136:153:5476:136:4852:-349.834,0,-405.97	0/1:25:17,8:17:612:8:288:-18.7417,0,-47.8877	1/1:197:0,197:0:0:197:7064:-635.816,-59.3029,0	1/1:116:0,116:0:0:116:4153:-373.951,-34.9195,0	0/1:99:59,40:59:2104:40:1432:-99.3756,0,-159.828	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:167:91,76:91:3272:76:2724:-195.131,0,-244.427	1/1:86:0,86:0:0:86:3071:-276.617,-25.8886,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:112:59,53:59:2120:53:1904:-137.922,0,-157.353	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:75:33,42:33:1180:42:1504:-113.077,0,-83.9308	0/1:43:23,20:23:828:20:716:-51.8234,0,-61.8998	0/1:40:23,17:23:828:17:606:-42.8299,0,-62.8029	0/1:81:33,48:33:1184:48:1716:-130.342,0,-82.4849	0/1:83:36,47:36:1296:47:1692:-127.581,0,-91.9584	1/1:108:1,107:1:36:107:3848:-342.916,-28.913,0	1/1:82:0,82:0:0:82:2933:-264.203,-24.6845,0	0/1:116:65,51:65:2340:51:1825:-129.61,0,-175.939	1/1:117:0,117:0:0:117:4189:-377.19,-35.2205,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:92:0,92:0:0:92:3312:-298.297,-27.6948,0	0/1:36:14,22:14:504:22:792:-60.7686,0,-34.861	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:153:0,153:0:0:153:5464:-491.887,-46.0576,0	0/1:26:8,18:8:288:18:644:-50.4638,0,-18.4406	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:18:5,13:5:176:13:468:-37.0411,0,-10.7665	0/1:119:67,52:67:2408:52:1868:-132.577,0,-181.154	1/1:105:2,103:2:72:103:3700:-326.364,-24.7714,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:124:60,64:60:2152:64:2300:-169.933,0,-156.619	1/1:131:2,129:2:72:129:4613:-408.496,-32.5982,0	0/1:82:42,40:42:1504:40:1432:-104.493,0,-110.97	1/1:84:0,84:0:0:84:2982:-268.61,-25.2865,0	0/1:81:44,37:44:1580:37:1324:-95.0787,0,-118.108	1/1:165:0,165:0:0:165:5905:-531.558,-49.67,0	1/1:75:0,75:0:0:75:2685:-241.894,-22.5773,0	0/1:60:27,33:27:964:33:1188:-89.1668,0,-69.015	0/1:50:17,33:17:608:33:1188:-92.1771,0,-40.0005	0/1:22:6,16:6:216:16:561:-44.1945,0,-13.1679	1/1:82:0,82:0:0:82:2918:-262.852,-24.6845,0	0/1:81:42,39:42:1504:39:1401:-102.006,0,-111.271	1/1:142:0,142:0:0:142:5100:-459.141,-42.7463,0	1/1:145:0,145:0:0:145:5216:-469.575,-43.6494,0	0/1:165:93,72:93:3320:72:2573:-182.148,0,-249.349	1/1:85:0,85:0:0:85:3039:-273.739,-25.5876,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:85:35,50:35:1252:50:1796:-136.335,0,-87.3975	0/1:133:71,62:71:2529:62:2220:-160.027,0,-187.823	1/1:140:0,140:0:0:140:4968:-447.268,-42.1442,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:64:0,64:0:0:64:2286:-206.002,-19.2659,0	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1277	1/1:90:1,89:1:36:89:3177:-282.555,-23.4944,0	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:77:37,40:37:1324:40:1436:-106.358,0,-96.2828	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	0/1:104:47,57:47:1684:57:2048:-153.284,0,-120.54	0/1:149:85,64:85:3035:64:2304:-162.767,0,-228.527	0/1:50:31,19:31:1112:19:680:-46.4777,0,-85.3398	1/1:146:0,146:0:0:146:5248:-472.454,-43.9504,0	1/1:103:0,103:0:0:103:3696:-332.841,-31.0061,0
chr09	21869564	.	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chr09	21922486	.	G	A	182484	PASS	AB=0.471552;ABP=40.3213;AC=135;AF=0.718085;AN=188;AO=8612;CIGAR=1X;DP=11452;DPB=11452;DPRA=19.1288;EPP=18695;EPPR=6165.65;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.964;MQMR=59.9732;NS=94;NUMALT=1;ODDS=5.64122;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=308206;QR=101275;RO=2838;RPL=0;RPP=18703.7;RPPR=6165.65;RPR=8612;RUN=1;SAF=8611;SAP=18695;SAR=1;SRF=2838;SRP=6165.65;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:78:0,78:0:0:78:2804:-252.582,-23.4803,0	1/1:98:0,98:0:0:98:3520:-317.009,-29.5009,0	1/1:223:0,223:0:0:223:7963:-716.69,-67.1297,0	1/1:308:0,308:0:0:308:10975:-987.644,-92.7172,0	0/1:71:36,35:36:1292:35:1260:-92.3324,0,-95.2106	0/1:55:21,34:21:756:34:1216:-93.1899,0,-51.5825	0/1:140:84,56:84:3020:56:1997:-137.858,0,-229.886	0/1:182:102,80:102:3622:80:2849:-201.86,0,-271.397	0/1:180:120,60:120:4296:60:2145:-139.13,0,-332.632	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0	0/1:95:54,41:54:1940:41:1476:-104.538,0,-146.278	1/1:126:0,126:0:0:126:4512:-406.247,-37.9298,0	1/1:116:0,116:0:0:116:4164:-374.941,-34.9195,0	1/1:106:0,106:0:0:106:3808:-342.916,-31.9092,0	0/1:106:49,57:49:1764:57:2043:-152.233,0,-127.135	0/1:102:46,56:46:1637:56:2012:-150.648,0,-116.912	0/1:49:24,25:24:864:25:900:-66.5705,0,-63.3321	0/1:47:19,28:19:684:28:1004:-76.5275,0,-47.7419	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:183:2,181:2:68:181:6500:-578.624,-48.6308,0	1/1:184:0,184:0:0:184:6593:-593.448,-55.3895,0	0/1:96:55,41:55:1961:41:1476:-104.237,0,-147.865	0/1:195:106,89:106:3781:89:3200:-229.521,0,-281.741	1/1:89:1,88:1:36:88:3137:-278.957,-23.1934,0	1/1:156:0,156:0:0:156:5557:-500.253,-46.9607,0	1/1:193:0,193:0:0:193:6917:-622.594,-58.0988,0	0/1:417:215,202:215:7666:202:7237:-525.851,0,-564.446	0/1:48:21,27:21:744:27:972:-73.3485,0,-52.8349	1/1:363:0,363:0:0:363:12979:-1167.92,-109.274,0	1/1:159:0,159:0:0:159:5686:-511.855,-47.8638,0	0/1:163:96,67:96:3432:67:2383:-165.659,0,-260.026	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:28:13,15:13:434:15:521:-38.7872,0,-30.9261	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:30:25,5:25:892:5:180:-7.52116,0,-71.5688	0/1:260:125,135:125:4473:135:4833:-356.854,0,-324.47	1/1:128:0,128:0:0:128:4584:-412.725,-38.5318,0	1/1:58:0,58:0:0:58:2065:-186.062,-17.4597,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:187:90,97:90:3236:97:3488:-257.837,0,-235.168	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:225:110,115:110:3900:115:4113:-302.62,0,-283.458	0/1:90:54,35:54:1917:35:1260:-86.554,0,-145.654	0/1:76:38,38:38:1341:38:1358:-99.642,0,-98.1098	0/1:199:106,93:106:3784:93:3340:-240.909,0,-280.855	0/1:143:71,72:71:2552:72:2569:-188.406,0,-186.883	1/1:236:2,234:2:68:234:8348:-744.708,-64.5854,0	1/1:131:0,131:0:0:131:4678:-421.178,-39.4349,0	0/1:159:84,75:84:3012:75:2673:-192.946,0,-223.447	1/1:150:0,150:0:0:150:5384:-484.689,-45.1545,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	1/1:142:0,142:0:0:142:5096:-458.782,-42.7463,0	0/1:93:45,48:45:1616:48:1724:-127.45,0,-117.734	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	1/1:235:0,235:0:0:235:8412:-757.062,-70.7421,0	0/1:73:31,42:31:1112:42:1512:-114.399,0,-78.4162	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/1:143:72,71:72:2545:71:2533:-185.172,0,-186.253	1/1:127:1,126:1:36:126:4503:-401.833,-34.6325,0	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/1:196:104,92:104:3686:92:3290:-237.315,0,-272.94	1/1:239:5,234:5:180:234:8408:-740.062,-55.3941,0	0/1:56:21,35:21:752:35:1260:-96.8478,0,-51.1486	1/1:118:0,118:0:0:118:4236:-381.418,-35.5215,0	0/1:175:95,80:95:3397:80:2849:-203.967,0,-253.263	1/1:211:1,210:1:36:210:7521:-673.33,-59.9191,0	1/1:58:1,57:1:36:57:2048:-180.993,-13.8615,0	0/1:68:40,28:40:1428:28:985:-68.4915,0,-108.347	1/1:74:0,74:0:0:74:2656:-239.268,-22.2762,0	0/1:35:15,20:15:517:20:716:-54.2317,0,-36.3186	1/1:153:0,153:0:0:153:5448:-490.431,-46.0576,0	0/1:143:74,69:74:2640:69:2461:-178.695,0,-194.8	1/1:233:0,233:0:0:233:8282:-745.255,-70.14,0	1/1:81:0,81:0:0:81:2897:-260.964,-24.3834,0	0/1:126:77,49:77:2745:49:1756:-120.394,0,-209.361	1/1:101:2,99:2:72:99:3544:-312.321,-23.5673,0	0/1:23:15,8:15:540:8:273:-17.9765,0,-42.0128	0/1:118:76,42:76:2709:42:1512:-100.853,0,-208.531	0/1:155:69,86:69:2438:86:3084:-231.128,0,-173.013	1/1:241:0,241:0:0:241:8574:-771.653,-72.5482,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:123:1,122:1:36:122:4383:-391.043,-33.4284,0	0/1:80:50,30:50:1773:30:1080:-73.4309,0,-135.769	1/1:173:5,168:5:176:168:6025:-526.144,-35.8932,0	0/1:31:12,19:12:432:19:684:-52.5584,0,-29.8893	0/1:75:34,41:34:1212:41:1476:-110.559,0,-86.7915	1/1:110:1,109:1:36:109:3920:-349.076,-29.515,0	0/1:62:35,26:35:1260:26:931:-65.386,0,-94.9828	0/1:171:75,96:75:2673:96:3444:-258.696,0,-189.338	0/1:81:56,25:56:2012:25:896:-56.4905,0,-156.97	1/1:207:0,207:0:0:207:7372:-663.527,-62.3132,0	1/1:174:0,174:0:0:174:6248:-562.412,-52.3792,0
chr09	21959571	.	G	A	155053	PASS	AB=0.473243;ABP=28.2267;AC=138;AF=0.734043;AN=188;AO=7264;CIGAR=1X;DP=9412;DPB=9412;DPRA=0;EPP=15776.6;EPPR=4665.16;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9832;MQMR=59.9842;NS=94;NUMALT=1;ODDS=0.628318;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=259796;QR=76383;RO=2147;RPL=7264;RPP=15776.6;RPPR=4665.16;RPR=0;RUN=1;SAF=0;SAP=15776.6;SAR=7264;SRF=0;SRP=4665.16;SRR=2147;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:185:0,185:0:0:185:6640:-597.666,-55.6906,0	1/1:179:0,179:0:0:179:6405:-576.536,-53.8844,0	1/1:231:1,230:1:36:230:8209:-735.226,-65.9397,0	0/1:76:36,40:36:1280:40:1436:-106.659,0,-92.625	0/1:45:25,20:25:892:20:716:-51.2214,0,-67.0533	0/1:142:70,72:70:2492:72:2576:-189.343,0,-181.787	0/1:155:90,65:90:3224:65:2309:-161.41,0,-243.722	0/1:69:34,35:34:1216:35:1256:-92.5742,0,-88.9755	1/1:71:0,71:0:0:71:2526:-227.588,-21.3731,0	0/1:27:13,14:13:448:14:500:-37.2084,0,-32.5212	1/1:63:0,63:0:0:63:2259:-203.573,-18.9649,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:64:27,37:27:955:37:1329:-100.646,0,-66.9989	0/1:40:22,18:22:779:18:648:-46.6107,0,-58.3909	0/1:47:23,24:23:828:24:860:-63.5734,0,-60.6957	0/1:38:18,20:18:644:20:720:-53.6896,0,-46.8515	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:231:0,231:0:0:231:8241:-741.701,-69.5379,0	1/1:194:0,194:0:0:194:6921:-622.958,-58.3998,0	0/1:158:117,41:117:4169:41:1468:-84.8534,0,-327.83	0/1:107:60,47:60:2144:47:1672:-118.557,0,-161.018	1/1:99:0,99:0:0:99:3537:-318.538,-29.802,0	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	1/1:279:0,279:0:0:279:9988:-898.851,-83.9874,0	0/1:195:101,94:101:3600:94:3342:-242.294,0,-265.502	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	1/1:276:1,275:1:36:275:9836:-881.529,-79.486,0	1/1:168:0,168:0:0:168:6023:-542.173,-50.573,0	0/1:129:57,72:57:2005:72:2558:-191.634,0,-141.889	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:183:88,95:88:3104:95:3392:-250.363,0,-224.5	1/1:320:0,320:0:0:320:11436:-1029.11,-96.3296,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:187:100,87:100:3556:87:3093:-222.305,0,-263.958	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:166:103,63:103:3675:63:2233:-151.262,0,-280.983	0/1:52:24,28:24:864:28:1000:-74.6618,0,-62.429	0/1:62:26,36:26:924:36:1256:-94.6783,0,-64.8138	0/1:89:46,43:46:1640:43:1540:-112.101,0,-121.097	0/1:101:56,45:56:1988:45:1616:-115.326,0,-148.79	1/1:178:1,176:1:36:176:6293:-562.864,-50.0439,0	1/1:103:0,103:0:0:103:3662:-329.782,-31.0061,0	0/1:129:66,63:66:2352:63:2260:-164.83,0,-173.106	1/1:184:0,184:0:0:184:6583:-592.548,-55.3895,0	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	1/1:157:1,156:1:32:156:5580:-499.124,-44.0624,0	0/1:33:21,12:21:744:12:432:-29.2872,0,-57.3503	0/1:22:15,7:15:528:7:252:-16.4063,0,-41.2287	1/1:174:2,172:2:72:172:6105:-542.717,-45.5425,0	0/1:68:45,23:45:1585:23:820:-53.6525,0,-122.468	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:74:31,43:31:1092:43:1548:-117.337,0,-76.3134	1/1:109:0,109:0:0:109:3916:-352.632,-32.8123,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:236:114,122:114:4061:122:4374:-322.79,0,-294.634	1/1:178:0,178:0:0:178:6350:-571.591,-53.5833,0	0/1:71:36,35:36:1280:35:1260:-92.3324,0,-94.1301	0/1:119:75,44:75:2656:44:1580:-106.669,0,-203.465	0/1:150:84,66:84:2992:66:2372:-168.583,0,-224.322	1/1:113:0,113:0:0:113:4033:-363.121,-34.0164,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:114:61,53:61:2180:53:1892:-136.241,0,-162.149	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	0/1:22:15,7:15:524:7:252:-16.4063,0,-40.867	1/1:135:0,135:0:0:135:4818:-433.766,-40.6391,0	0/1:80:39,41:39:1392:41:1468:-108.334,0,-101.497	1/1:115:0,115:0:0:115:4117:-370.714,-34.6185,0	1/1:208:0,208:0:0:208:7474:-672.697,-62.6142,0	0/1:119:37,82:37:1324:82:2925:-227.661,0,-83.6395	1/1:152:3,149:3:108:149:5310:-467.95,-35.6814,0	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:126:68,58:68:2420:58:2065:-148.189,0,-180.127	0/1:136:62,74:62:2192:74:2633:-196.276,0,-156.603	1/1:227:2,225:2:72:225:8065:-719.028,-61.4971,0	1/1:98:0,98:0:0:98:3524:-317.368,-29.5009,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	0/1:75:41,34:41:1468:34:1220:-87.5296,0,-109.839	1/1:120:0,120:0:0:120:4312:-388.254,-36.1236,0	0/1:36:15,21:15:536:21:752:-57.1692,0,-37.7377	0/1:79:44,35:44:1571:35:1256:-89.5639,0,-117.899	1/1:56:0,56:0:0:56:2000:-180.266,-16.8577,0	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:56:31,25:31:1104:25:896:-64.1027,0,-82.813	0/1:48:32,16:32:1119:16:576:-37.7255,0,-86.5674	1/1:156:0,156:0:0:156:5580:-502.324,-46.9607,0	1/1:91:0,91:0:0:91:3264:-293.979,-27.3937,0
chr09	21962059	.	C	A	84339.2	PASS	AB=0.493339;ABP=5.93224;AC=52;AF=0.276596;AN=188;AO=3766;CIGAR=1X;DP=16599;DPB=16599;DPRA=0.983594;EPP=8180.78;EPPR=27832.6;GTI=4;LEN=1;MEANALT=1.10606;MQM=57.7339;MQMR=59.9227;NS=94;NUMALT=1;ODDS=0.137353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134151;QR=452448;RO=12824;RPL=2182;RPP=209.204;RPPR=1174.24;RPR=1584;RUN=1;SAF=2182;SAP=209.204;SAR=1584;SRF=7727;SRP=1174.24;SRR=5097;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:79:79,0:79:2778:0:0:0,-23.7814,-250.173	0/0:226:225,1:225:7920:1:21:0,-65.9329,-710.726	0/0:391:391,0:391:13781:0:0:0,-117.703,-1240.08	0/0:408:406,2:406:14325:2:72:0,-115.984,-1282.18	0/1:125:63,62:63:2184:62:2216:-161.622,0,-159.191	0/1:129:65,64:65:2265:64:2266:-164.735,0,-165.275	0/1:156:89,67:89:3158:67:2399:-168.798,0,-237.485	0/1:344:158,186:158:5640:186:6645:-493.729,0,-404.167	0/1:152:89,63:89:3139:63:2204:-152.562,0,-236.975	0/0:275:275,0:275:9761:0:0:0,-82.7832,-878.443	0/1:81:36,45:36:1260:45:1594:-119.345,0,-89.3162	0/0:146:146,0:146:5099:0:0:0,-43.9504,-457.956	0/0:144:144,0:144:5065:0:0:0,-43.3483,-455.997	0/0:136:136,0:136:4789:0:0:0,-40.9401,-431.169	0/1:128:66,62:66:2320:62:2183:-157.868,0,-170.523	0/1:121:65,55:65:2311:55:1960:-140.128,0,-171.722	0/1:125:67,58:67:2346:58:2080:-149.234,0,-173.767	0/1:133:70,63:70:2461:63:2244:-161.459,0,-181.56	0/0:42:41,0:41:1432:0:0:0,-12.3422,-128.812	0/0:228:228,0:228:8085:0:0:0,-68.6348,-727.671	0/0:276:276,0:276:9667:0:0:0,-83.0843,-869.98	0/1:143:53,90:53:1861:90:3204:-245.308,0,-124.718	0/1:128:74,54:74:2631:54:1940:-136.235,0,-198.506	0/0:159:159,0:159:5612:0:0:0,-47.8638,-505.157	0/0:141:141,0:141:5008:0:0:0,-42.4452,-450.867	0/0:559:558,1:558:19786:1:36:0,-164.677,-1776.67	0/1:413:196,217:196:6919:217:7740:-571.412,0,-497.981	0/1:73:31,42:31:1067:42:1494:-112.415,0,-74.3532	0/0:306:305,1:305:10799:1:36:0,-88.5169,-968.172	0/0:259:258,1:258:9116:1:36:0,-74.3711,-816.817	0/1:170:78,92:78:2784:92:3295:-244.941,0,-199.626	0/0:3:3,0:3:85:0:0:0,-0.90309,-7.93009	0/1:12:8,4:8:288:4:136:-8.95742,0,-22.655	0/1:8:5,3:5:180:3:104:-7.29266,0,-14.1438	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/1:13:6,7:6:216:7:252:-19.1109,0,-15.8771	0/1:411:211,199:211:7440:199:7112:-515.014,0,-545.867	0/0:280:280,0:280:9875:0:0:0,-84.2884,-888.544	0/0:115:115,0:115:4029:0:0:0,-34.6184,-362.802	0/1:4:2,2:2:57:2:72:-5.63014,0,-4.20919	0/1:271:135,136:135:4793:136:4841:-353.341,0,-349.948	0/0:59:59,0:59:2076:0:0:0,-17.7608,-187.108	0/1:274:156,118:156:5512:118:4206:-296.068,0,-413.537	0/1:118:58,60:58:1995:60:2152:-158.411,0,-144.293	0/1:126:58,68:58:2047:68:2406:-178.467,0,-146.572	0/1:170:93,77:93:3285:77:2718:-193.518,0,-244.696	0/1:237:127,110:127:4492:110:3900:-279.087,0,-333.102	0/0:271:271,0:271:9542:0:0:0,-81.5791,-858.734	0/0:156:156,0:156:5467:0:0:0,-46.9607,-492.133	0/1:312:155,157:155:5440:157:5606:-409.918,0,-395.808	0/0:176:172,3:172:6078:3:108:0,-42.9649,-537.047	0/1:13:11,2:11:396:2:64:-2.16429,0,-32.0694	0/0:235:233,2:233:8260:2:72:0,-63.9102,-736.576	0/1:98:43,55:43:1518:55:1946:-145.878,0,-107.411	0/1:11:7,4:7:252:4:144:-9.99285,0,-19.7176	0/0:260:257,3:257:9076:3:108:0,-68.1984,-806.754	0/1:60:41,19:41:1442:19:676:-43.057,0,-112.01	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:34:24,10:24:860:10:360:-22.4162,0,-67.4868	0/1:164:92,72:92:3234:72:2576:-181.491,0,-241.913	0/0:167:167,0:167:5885:0:0:0,-50.272,-529.34	0/1:5:3,2:3:108:2:72:-5.33115,0,-8.56908	0/1:388:164,223:164:5800:223:7974:-600.584,0,-405.253	0/0:482:478,3:478:16925:3:108:0,-135.08,-1512.72	0/1:142:92,50:92:3250:50:1796:-119.008,0,-249.974	0/1:155:72,82:72:2562:82:2903:-214.912,0,-184.259	0/1:272:131,140:131:4636:140:4961:-364.607,0,-335.091	0/0:261:259,2:259:9143:2:72:0,-71.7325,-815.988	0/0:44:44,0:44:1539:0:0:0,-13.2453,-138.798	0/1:146:64,82:64:2251:82:2936:-220.272,0,-158.699	0/0:153:152,1:152:5364:1:36:0,-42.4593,-479.301	0/1:44:29,15:29:1023:15:536:-35.3249,0,-79.1364	0/0:179:175,4:175:6160:4:136:0,-41.4863,-542.097	0/1:156:87,69:87:3067:69:2446:-172.873,0,-229.298	0/0:306:306,0:306:10853:0:0:0,-92.1152,-976.656	0/0:291:290,1:290:10267:1:36:0,-84.0015,-920.367	0/1:346:208,138:208:7334:138:4944:-340.484,0,-555.952	0/0:275:275,0:275:9691:0:0:0,-82.7832,-872.131	0/1:7:6,1:6:207:1:36:-1.48596,0,-16.8597	0/1:233:107,126:107:3746:126:4508:-335.413,0,-267.128	0/1:240:120,120:120:4253:120:4262:-311.16,0,-310.696	0/0:398:397,0:397:14059:0:0:0,-119.509,-1263.19	0/0:153:153,0:153:5320:0:0:0,-46.0576,-478.834	0/0:132:132,0:132:4675:0:0:0,-39.736,-420.914	0/1:141:73,68:73:2522:68:2418:-175.343,0,-184.758	0/0:241:241,0:241:8473:0:0:0,-72.5482,-762.582	0/1:61:27,34:27:926:34:1224:-91.8943,0,-65.2846	0/1:130:64,66:64:2217:66:2359:-173.101,0,-160.656	0/0:117:117,0:117:4127:0:0:0,-35.2205,-371.596	0/1:77:37,40:37:1301:40:1415:-104.394,0,-94.2066	0/1:116:55,61:55:1924:61:2155:-159.039,0,-138.514	0/1:156:61,95:61:2155:95:3378:-256.787,0,-147.201	0/0:263:263,0:263:9323:0:0:0,-79.1709,-839.012	0/0:221:220,1:220:7743:1:36:0,-62.9294,-693.313
chr09	22000731	.	T	C	58532.3	PASS	AB=0.501348;ABP=3.09227;AC=48;AF=0.258065;AN=186;AO=2617;CIGAR=1X;DP=11495;DPB=11495;DPRA=0.903206;EPP=5685.75;EPPR=19264;GTI=1;LEN=1;MEANALT=1.05172;MQM=59.9809;MQMR=59.9956;NS=93;NUMALT=1;ODDS=0.0641239;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92442;QR=312526;RO=8874;RPL=1257;RPP=11.8132;RPPR=17.3409;RPR=1360;RUN=1;SAF=1257;SAP=11.8132;SAR=1360;SRF=4559;SRP=17.5788;SRR=4315;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:79:79,0:79:2783:0:0:0,-23.7814,-250.71	0/0:133:133,0:133:4707:0:0:0,-40.037,-423.795	0/0:150:150,0:150:5270:0:0:0,-45.1545,-474.442	0/0:227:226,1:226:7995:1:36:0,-64.7355,-715.982	0/1:72:40,32:40:1399:32:1131:-80.4232,0,-104.532	0/1:88:51,37:51:1812:37:1304:-91.168,0,-136.871	0/1:157:88,69:88:3136:69:2414:-170.25,0,-235.205	0/1:197:120,77:120:4211:77:2729:-186.549,0,-319.874	0/1:127:64,63:64:2266:63:2228:-162.551,0,-165.971	0/0:141:141,0:141:4999:0:0:0,-42.4452,-450.063	0/1:69:29,40:29:1028:40:1409:-106.334,0,-72.062	0/0:194:194,0:194:6797:0:0:0,-58.3998,-611.806	0/0:179:179,0:179:6301:0:0:0,-53.8844,-567.195	0/0:110:110,0:110:3812:0:0:0,-33.1133,-343.284	0/1:142:62,80:62:2157:80:2828:-212.012,0,-151.651	0/1:112:60,52:60:2119:52:1834:-131.624,0,-157.263	0/1:112:49,63:49:1687:63:2214:-165.807,0,-118.397	0/1:118:68,50:68:2346:50:1775:-124.511,0,-175.88	0/0:66:66,0:66:2298:0:0:0,-19.868,-207.082	0/0:179:179,0:179:6319:0:0:0,-53.8844,-568.811	0/0:230:230,0:230:8113:0:0:0,-69.2369,-730.2	0/1:65:28,37:28:1000:37:1307:-98.3638,0,-70.7484	0/1:110:55,55:55:1964:55:1953:-142.928,0,-143.922	0/0:190:190,0:190:6683:0:0:0,-57.1957,-601.56	0/0:88:88,0:88:3110:0:0:0,-26.4906,-280.129	0/0:209:209,0:209:7348:0:0:0,-62.9153,-661.383	0/1:286:160,126:160:5657:126:4502:-319.254,0,-423.16	0/1:82:46,36:46:1635:36:1252:-88.2948,0,-122.754	0/0:282:281,1:281:9919:1:36:0,-81.2922,-889.068	0/0:106:105,1:105:3725:1:36:0,-28.3109,-331.854	0/1:112:54,58:54:1928:58:2052:-151.234,0,-140.081	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	.:.:.:.:.:.:.:.	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:341:181,160:181:6354:160:5607:-402.105,0,-469.312	0/0:104:104,0:104:3671:0:0:0,-31.3071,-330.598	0/0:82:82,0:82:2815:0:0:0,-24.6845,-253.589	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:148:82,66:82:2920:66:2359:-168.016,0,-218.484	0/0:50:50,0:50:1722:0:0:0,-15.0515,-155.261	0/1:157:67,90:67:2365:90:3215:-242.306,0,-165.846	0/1:137:59,78:59:2080:78:2741:-205.692,0,-146.23	0/1:127:58,69:58:2024:69:2450:-182.523,0,-144.203	0/1:90:40,50:40:1436:50:1773:-132.758,0,-102.445	0/1:120:62,58:62:2188:58:2080:-151.339,0,-161.06	0/0:180:180,0:180:6362:0:0:0,-54.1854,-572.677	0/0:117:117,0:117:4119:0:0:0,-35.2205,-370.901	0/1:154:72,82:72:2531:82:2892:-214.158,0,-181.684	0/0:138:136,2:136:4844:2:72:0,-34.7054,-429.28	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:154:154,0:154:5463:0:0:0,-46.3586,-491.804	0/1:47:25,22:25:892:22:783:-56.6364,0,-66.4513	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/0:122:122,0:122:4294:0:0:0,-36.7257,-386.644	0/1:64:33,30:33:1168:30:1071:-77.4639,0,-86.1899	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:13:7,6:7:233:6:212:-15.5114,0,-17.3809	0/1:109:62,47:62:2176:47:1673:-118.045,0,-163.295	0/0:169:168,1:168:5893:1:36:0,-47.2758,-526.892	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:158:77,81:77:2701:81:2866:-210.614,0,-195.773	0/0:179:178,1:178:6300:1:36:0,-50.2861,-563.502	0/1:91:50,41:50:1753:41:1447:-103.131,0,-130.658	0/1:77:40,37:40:1413:37:1281:-92.4062,0,-104.286	0/1:192:69,123:69:2413:123:4310:-330.282,0,-159.627	0/0:134:131,3:131:4637:3:93:0,-31.6613,-408.734	0/0:46:45,1:45:1577:1:36:0,-10.2491,-138.62	0/1:92:43,49:43:1523:49:1743:-129.459,0,-109.668	0/0:155:155,0:155:5432:0:0:0,-46.6596,-489.018	0/1:26:18,8:18:625:8:288:-18.4406,0,-48.7457	0/0:90:90,0:90:3181:0:0:0,-27.0927,-286.515	0/1:157:69,88:69:2460:88:3085:-230.608,0,-174.393	0/0:180:180,0:180:6318:0:0:0,-54.1854,-568.725	0/0:231:230,1:230:8119:1:36:0,-65.9397,-727.142	0/1:105:56,49:56:1996:49:1719:-123.383,0,-148.306	0/0:187:185,2:185:6538:2:72:0,-49.4559,-581.676	0/0:5:5,0:5:168:0:0:0,-1.50515,-15.4509	0/1:161:79,82:79:2784:82:2940:-216.368,0,-202.335	0/1:131:68,62:68:2412:62:2175:-156.521,0,-177.844	0/0:268:268,0:268:9460:0:0:0,-80.676,-851.378	0/0:125:125,0:125:4381:0:0:0,-37.6287,-394.472	0/0:160:160,0:160:5565:0:0:0,-48.1648,-500.986	0/1:166:91,75:91:3153:75:2647:-188.502,0,-234.028	0/0:275:274,0:274:9605:0:0:0,-82.4822,-864.175	0/1:58:22,36:22:748:36:1256:-95.8797,0,-50.1735	0/1:119:61,58:61:2146:58:2035:-147.597,0,-157.585	0/0:134:134,0:134:4737:0:0:0,-40.338,-426.493	0/1:56:17,39:17:596:39:1385:-108.091,0,-37.1101	0/1:112:55,56:55:1889:56:1957:-142.776,0,-136.66	0/1:104:35,69:35:1232:69:2419:-186.658,0,-79.8769	0/0:172:172,0:172:6113:0:0:0,-51.7772,-550.274	0/0:257:257,0:257:9053:0:0:0,-77.3647,-814.764
chr09	22020241	.	ATGAC	GTGAC,GTGAT	163713	PASS	AB=0.532784,0.462148;ABP=32.483,42.2997;AC=131,57;AF=0.696809,0.303191;AN=188;AO=5629,1948;CIGAR=1X4M,1X3M1X;DP=7616;DPB=7616;DPRA=0,0.820036;EPP=12148.2,4215.68;EPPR=0;GTI=2;LEN=1,5;MEANALT=1.97872,2.35088;MQM=59.9888,59.904;MQMR=0;NS=94;NUMALT=2;ODDS=1.76465;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=200629,68902;QR=0;RO=0;RPL=9,2;RPP=12148.2,4215.68;RPPR=0;RPR=5620,1946;RUN=1,1;SAF=5629,1948;SAP=12226.2,4233.04;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45,0:0:0:45,0:1612,0:-145.37,-13.5464,0,-145.37,-13.5464,-145.37	1/1:32:0,32,0:0:0:32,0:1152,0:-103.99,-9.63296,0,-103.99,-9.63296,-103.99	1/1:62:0,62,0:0:0:62,0:2213,0:-199.433,-18.6639,0,-199.433,-18.6639,-199.433	1/1:128:0,125,3:0:0:125,3:4457,103:-400.951,-37.6288,0,-392.588,-28.9222,-391.685	1/2:44:0,35,9:0:0:35,9:1260,318:-129.066,-26.2513,-15.7153,-103.169,0,-100.46	1/2:33:0,25,8:0:0:25,8:885,287:-95.8516,-23.7682,-16.2425,-72.4408,0,-70.0325	1/2:69:0,48,21:0:0:48,21:1728,736:-201.236,-60.233,-45.7836,-141.356,0,-135.034	1/2:100:0,56,42:0:0:56,42:1948,1495:-280.294,-121.913,-105.056,-158.444,0,-145.801	1/2:41:0,32,9:0:0:32,9:1133,324:-119.082,-26.7966,-17.1636,-92.6437,0,-89.9344	1/1:47:0,47,0:0:0:47,0:1662,0:-149.863,-14.1484,0,-149.863,-14.1484,-149.863	1/2:104:0,29,75:0:0:29,75:1040,2652:-301.177,-216.35,-207.62,-85.1845,0,-62.6072	1/1:95:0,91,0:0:0:91,0:3253,0:-292.649,-27.3937,0,-292.649,-27.3937,-292.649	1/1:113:0,112,0:0:0:112,0:4007,0:-360.566,-33.7154,0,-360.566,-33.7154,-360.566	1/1:78:0,76,0:0:0:76,0:2709,0:-243.819,-22.8783,0,-243.819,-22.8783,-243.819	1/2:51:0,35,15:0:0:35,15:1230,529:-143.226,-43.1122,-32.5762,-100.153,0,-95.6373	1/2:51:0,37,14:0:0:37,14:1332,504:-150.168,-41.4837,-30.3456,-109.044,0,-104.83	1/2:28:0,16,12:0:0:16,12:576,430:-82.4274,-35.4277,-30.6113,-47.3585,0,-43.7461	1/2:22:0,15,7:0:0:15,7:536,250:-64.4419,-20.7395,-16.2241,-44.0594,0,-41.9522	1/1:42:0,42,0:0:0:42,0:1503,0:-135.564,-12.6433,0,-135.564,-12.6433,-135.564	1/1:112:0,112,0:0:0:112,0:3994,0:-359.647,-33.7154,0,-359.647,-33.7154,-359.647	1/1:110:0,110,0:0:0:110,0:3891,0:-350.277,-33.1133,0,-350.277,-33.1133,-350.277	1/2:38:0,22,16:0:0:22,16:788,570:-111.082,-46.8166,-40.194,-64.6221,0,-59.8057	1/2:94:0,55,39:0:0:55,39:1976,1382:-274.141,-112.939,-96.3822,-161.558,0,-149.818	1/1:71:0,71,0:0:0:71,0:2499,0:-225.159,-21.3731,0,-225.159,-21.3731,-225.159	1/1:71:0,70,0:0:0:70,0:2490,0:-224.138,-21.0721,0,-224.138,-21.0721,-224.138	1/1:197:0,197,0:0:0:197,0:7024,0:-632.201,-59.3029,0,-632.201,-59.3029,-632.201	1/2:139:0,80,57:0:0:80,57:2857,2033:-398.68,-165.752,-141.67,-232.953,0,-215.794	1/2:22:0,16,5:0:0:16,5:576,180:-61.8002,-14.787,-9.97047,-47.1115,0,-45.6063	1/1:230:0,230,0:0:0:230,0:8216,0:-739.449,-69.2369,0,-739.449,-69.2369,-739.449	1/1:118:0,117,1:0:0:117,1:4181,36:-376.111,-35.2205,0,-373.174,-31.9233,-372.872	1/2:104:0,74,29:0:0:74,29:2634,1017:-297.506,-82.8285,-60.5523,-214.747,0,-206.017	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:63:0,16,47:0:0:16,47:576,1667:-183.149,-136.149,-131.333,-47.3585,0,-33.2101	2/2:83:0,2,80:0:0:2,80:72,2822:-253.86,-247.985,-247.383,-24.0824,-18.2076,0	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/2:88:0,15,73:0:0:15,73:540,2603:-256.605,-212.543,-208.028,-44.4211,0,-22.4459	1/2:148:0,105,42:0:0:105,42:3722,1486:-424.247,-121.031,-89.4227,-303.21,0,-290.567	1/1:70:0,69,0:0:0:69,0:2454,0:-220.791,-20.7711,0,-220.791,-20.7711,-220.791	1/1:70:0,69,0:0:0:69,0:2465,0:-221.743,-20.7711,0,-221.743,-20.7711,-221.743	2/2:76:0,3,73:0:0:3,73:108,2610:-234.789,-225.976,-225.073,-21.9752,-12.8031,0	1/2:77:0,43,34:0:0:43,34:1529,1204:-223.032,-98.43,-85.4857,-124.957,0,-114.722	1/1:50:0,50,0:0:0:50,0:1800,0:-162.282,-15.0515,0,-162.282,-15.0515,-162.282	1/1:74:0,70,4:0:0:70,4:2516,144:-226.332,-21.0721,0,-214.582,-8.9626,-213.378	1/2:44:0,26,18:0:0:26,18:936,634:-128.345,-51.968,-44.1413,-76.7327,0,-71.3141	1/2:41:0,27,14:0:0:27,14:923,502:-116.198,-41.3029,-33.1751,-75.2474,0,-71.033	1/2:65:0,45,19:0:0:45,19:1620,650:-184.936,-52.7402,-39.1939,-132.184,0,-126.464	1/2:63:0,31,32:0:0:31,32:1116,1134:-183.798,-92.7355,-83.4036,-91.4198,0,-81.7868	1/1:140:0,140,0:0:0:140,0:4995,0:-449.695,-42.1442,0,-449.695,-42.1442,-449.695	1/1:64:0,64,0:0:0:64,0:2300,0:-207.261,-19.2659,0,-207.261,-19.2659,-207.261	1/2:103:0,66,37:0:0:66,37:2361,1294:-298.143,-105.617,-85.749,-192.879,0,-181.741	1/1:86:0,86,0:0:0:86,0:3065,0:-276.077,-25.8886,0,-276.077,-25.8886,-276.077	2/2:101:0,5,96:0:0:5,96:180,3401:-305.917,-291.23,-289.725,-28.8989,-13.852,0	1/1:71:0,71,0:0:0:71,0:2528,0:-227.77,-21.3731,0,-227.77,-21.3731,-227.77	1/2:41:0,27,14:0:0:27,14:949,499:-118.272,-41.0316,-32.9038,-77.595,0,-73.3805	1/2:113:0,11,102:0:0:11,102:396,3610:-326.712,-294.4,-291.089,-32.6714,0,-1.96636	1/1:139:0,138,0:0:0:138,0:4956,0:-445.976,-41.5421,0,-445.976,-41.5421,-445.976	1/2:21:0,16,5:0:0:16,5:576,174:-61.5039,-14.4961,-9.67962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chr09	22020251	.	A	G	40052	PASS	AB=0.459796;ABP=47.0107;AC=57;AF=0.303191;AN=188;AO=1926;CIGAR=1X;DP=7565;DPB=7565;DPRA=0.816567;EPP=2193.92;EPPR=5541.2;GTI=4;LEN=1;MEANALT=1.06897;MQM=59.9081;MQMR=59.9888;NS=94;NUMALT=1;ODDS=1.206;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68942;QR=201548;RO=5635;RPL=1660;RPP=2193.92;RPPR=5541.2;RPR=266;RUN=1;SAF=1926;SAP=4185.27;SAR=0;SRF=5635;SRP=12239.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:127:124,3:124:4424:3:108:0,-28.1556,-388.172	0/1:43:34,9:34:1205:9:316:-15.8346,0,-95.8096	0/1:32:24,8:24:864:8:288:-16.6344,0,-68.4496	0/1:68:48,20:48:1696:20:716:-44.2692,0,-132.456	0/1:99:56,43:56:2008:43:1540:-109.091,0,-151.191	0/1:42:33,9:33:1180:9:324:-16.8626,0,-93.8648	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:102:29,73:29:1044:73:2623:-205.612,0,-63.5697	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:112:112,0:112:4028:0:0:0,-33.7154,-362.707	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/1:50:34,16:34:1224:16:576:-37.1189,0,-95.4155	0/1:51:38,13:38:1368:13:468:-27.1071,0,-108.068	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	0/1:21:15,6:15:525:6:212:-13.1032,0,-41.2564	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.03	0/0:110:110,0:110:3918:0:0:0,-33.1133,-352.705	0/1:38:22,16:22:776:16:576:-40.7358,0,-58.723	0/1:93:55,38:55:1964:38:1358:-94.5241,0,-149.039	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:201:201,0:201:7192:0:0:0,-60.507,-647.329	0/1:141:84,57:84:3016:57:2043:-141.697,0,-229.225	0/1:22:16,6:16:567:6:216:-13.1679,0,-44.7381	0/0:230:230,0:230:8224:0:0:0,-69.2369,-740.173	0/0:117:115,1:115:4117:1:36:0,-31.681,-367.114	0/1:106:77,29:77:2741:29:1018:-60.0204,0,-215.022	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:62:16,46:16:576:46:1626:-127.945,0,-33.5111	1/1:83:2,81:2:72:81:2897:-254.129,-18.1488,0	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:88:15,73:15:540:73:2619:-209.466,0,-22.4459	0/1:151:109,42:109:3892:42:1508:-90.5591,0,-305.02	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	1/1:76:3,72:3:108:72:2580:-222.374,-12.8619,0	0/1:77:43,33:43:1533:33:1176:-82.9074,0,-115.023	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:74:70,4:70:2500:4:144:0,-8.9626,-211.939	0/1:44:26,18:26:913:18:648:-45.4066,0,-69.2387	0/1:42:28,14:28:1000:14:504:-33.0548,0,-77.6721	0/1:66:48,18:48:1697:18:630:-37.1566,0,-133.146	0/1:63:31,32:31:1116:32:1152:-85.0253,0,-81.7868	0/0:141:141,0:141:5040:0:0:0,-42.4452,-453.747	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/1:103:67,36:67:2396:36:1281:-84.5806,0,-184.891	0/0:86:86,0:86:3060:0:0:0,-25.8886,-275.63	1/1:100:5,95:5:180:95:3400:-289.577,-13.5509,0	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:40:27,13:27:960:13:464:-30.0563,0,-74.6751	0/1:110:11,99:11:396:99:3560:-287.49,0,-2.86945	0/0:140:140,0:140:5012:0:0:0,-42.1442,-451.227	0/1:20:15,5:15:532:5:180:-10.5315,0,-42.1925	1/1:71:5,66:5:180:66:2376:-197.545,-4.82107,0	0/1:60:8,52:8:288:52:1860:-149.618,0,-8.20561	0/1:50:31,19:31:1108:19:684:-46.8388,0,-84.9795	0/0:119:119,0:119:4263:0:0:0,-35.8226,-383.847	1/1:75:1,74:1:36:74:2660:-236.047,-18.979,0	0/1:138:96,41:96:3409:41:1459:-89.9873,0,-265.463	0/0:115:115,0:115:4112:0:0:0,-34.6184,-370.265	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/1:85:49,36:49:1752:36:1290:-90.5447,0,-132.377	0/1:83:47,36:47:1680:36:1294:-91.7755,0,-126.502	0/0:64:63,1:63:2256:1:36:0,-15.6676,-199.705	0/0:59:56,3:56:2008:3:108:0,-7.6856,-170.918	0/1:46:27,19:27:957:19:684:-48.0429,0,-72.5965	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	1/1:91:8,83:8:280:83:2957:-240.823,-1.85443,0	0/0:113:113,0:113:4016:0:0:0,-34.0164,-361.632	0/1:38:32,6:32:1144:6:216:-8.35137,0,-91.8304	0/0:146:145,1:145:5184:1:36:0,-40.5628,-463.313	0/0:128:128,0:128:4562:0:0:0,-38.5318,-410.744	0/1:122:84,38:84:3016:38:1352:-85.2547,0,-234.945	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:45:19,26:19:669:26:923:-69.8392,0,-46.9876	0/1:73:45,28:45:1608:28:993:-67.7073,0,-123.035	0/1:83:49,34:49:1760:34:1220:-85.1213,0,-133.698	0/0:165:165,0:165:5920:0:0:0,-49.6699,-532.907	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:81:80,1:80:2856:1:36:0,-20.7852,-253.68	0/1:36:23,13:23:824:13:468:-31.6226,0,-63.6462	0/0:139:139,0:139:4973:0:0:0,-41.8432,-447.717	0/1:21:14,7:14:500:7:252:-16.7073,0,-39.0145	0/1:52:36,16:36:1296:16:576:-36.5214,0,-101.29	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:109:23,86:23:828:86:3092:-245.695,0,-42.0318	0/1:232:51,181:51:1824:181:6471:-512.611,0,-94.6021	0/1:44:28,16:28:1004:16:576:-38.9297,0,-77.4305	0/0:122:122,0:122:4352:0:0:0,-36.7257,-391.828	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511
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chr09	22072319	.	C	T	228512	PASS	AB=0.449928;ABP=124.352;AC=134;AF=0.712766;AN=188;AO=8494;CIGAR=1X;DP=11571;DPB=11571;DPRA=125.75;EPP=18447.5;EPPR=6662.92;GTI=3;LEN=1;MEANALT=1.05435;MQM=59.2489;MQMR=59.9723;NS=94;NUMALT=1;ODDS=1.4107;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=302058;QR=109029;RO=3071;RPL=4268;RPP=3.46126;RPPR=46.8506;RPR=4226;RUN=1;SAF=4268;SAP=3.46126;SAR=4226;SRF=1410;SRP=47.5577;SRR=1661;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1016:-91.7498,-8.72987,0	1/1:24:0,24:0:0:24:837:-75.6467,-7.22472,0	1/1:78:0,78:0:0:78:2767:-249.272,-23.4803,0	1/1:275:0,275:0:0:275:9781:-879.49,-82.7833,0	0/1:65:37,28:37:1311:28:988:-69.667,0,-98.7239	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/1:179:89,90:89:3180:90:3187:-233.108,0,-232.54	0/1:96:64,32:64:2266:32:1131:-73.1989,0,-175.303	0/1:62:41,20:41:1472:20:707:-45.2322,0,-114.053	1/1:147:0,147:0:0:147:5238:-471.307,-44.2514,0	0/1:118:58,60:58:2075:60:2130:-156.336,0,-151.498	1/1:88:0,88:0:0:88:3135:-282.376,-26.4906,0	1/1:73:0,73:0:0:73:2576:-232.089,-21.9752,0	1/1:139:0,139:0:0:139:4947:-444.578,-41.8432,0	0/1:124:53,71:53:1866:71:2544:-191.823,0,-130.89	0/1:88:41,47:41:1449:47:1667:-123.781,0,-104.213	0/1:31:19,12:19:684:12:432:-29.8893,0,-52.5584	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	1/1:192:0,192:0:0:192:6835:-615.019,-57.7978,0	1/1:175:0,175:0:0:175:6226:-560.349,-52.6803,0	0/1:211:157,54:157:5576:54:1924:-109.764,0,-438.449	0/1:137:85,52:85:3035:52:1860:-126.43,0,-232.139	1/1:90:0,90:0:0:90:3203:-288.359,-27.0927,0	1/1:103:0,103:0:0:103:3679:-331.179,-31.0061,0	1/1:382:0,382:0:0:382:13559:-1219.52,-114.993,0	0/1:353:207,144:207:7372:144:5134:-356.092,0,-557.547	0/1:77:42,35:42:1496:35:1223:-87.1935,0,-111.755	1/1:361:0,361:0:0:361:12838:-1155,-108.672,0	1/1:158:0,158:0:0:158:5626:-505.584,-47.5627,0	0/1:164:87,77:87:3074:77:2740:-197.412,0,-227.521	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:19:10,9:10:351:9:320:-23.4228,0,-26.2071	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:12:3,9:3:108:9:312:-24.803,0,-6.46281	0/1:408:217,191:217:7681:191:6807:-489.374,0,-568.507	1/1:192:0,191:0:0:191:6815:-612.796,-57.4967,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:180:103,77:103:3674:77:2751:-193.557,0,-276.678	1/1:59:0,59:0:0:59:2095:-188.73,-17.7608,0	0/1:168:92,76:92:3271:76:2712:-193.702,0,-244.038	0/1:170:91,79:91:3230:79:2824:-202.373,0,-239.748	0/1:136:68,68:68:2389:68:2411:-176.275,0,-174.325	0/1:156:88,68:88:3126:68:2424:-171.432,0,-234.606	0/1:82:52,30:52:1868:30:1060:-71.0268,0,-143.715	1/1:182:0,182:0:0:182:6498:-584.776,-54.7875,0	1/1:137:0,137:0:0:137:4907:-441.65,-41.2411,0	0/1:222:134,88:134:4780:88:3140:-215.796,0,-363.53	1/1:146:0,146:0:0:146:5186:-466.488,-43.9504,0	0/1:17:10,7:10:360:7:252:-17.8647,0,-27.6268	1/1:43:0,43:0:0:43:1523:-137.362,-12.9443,0	0/1:75:49,26:49:1729:26:934:-61.6213,0,-133.316	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:193:0,193:0:0:193:6842:-615.677,-58.0988,0	0/1:58:36,22:36:1274:22:768:-51.8829,0,-97.5017	0/1:7:3,4:3:108:4:144:-11.2055,0,-7.96796	0/1:16:10,6:10:342:6:216:-14.9694,0,-26.2926	0/1:114:50,64:50:1759:64:2288:-171.864,0,-124.275	1/1:211:0,211:0:0:211:7551:-679.05,-63.5173,0	0/1:12:9,3:9:315:3:108:-6.46198,0,-24.9677	0/1:341:191,149:191:6798:149:5262:-370.789,0,-509.184	1/1:255:4,251:4:144:251:8888:-786.167,-63.449,0	0/1:104:40,64:40:1424:64:2275:-173.615,0,-97.1504	0/1:143:77,66:77:2678:66:2336:-167.447,0,-198.219	0/1:270:139,131:139:4915:131:4669:-338.929,0,-361.219	1/1:150:0,150:0:0:150:5309:-477.76,-45.1545,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:51:34,17:34:1212:17:596:-38.6153,0,-93.9475	1/1:149:0,149:0:0:149:5326:-478.882,-44.8535,0	0/1:33:20,13:20:716:13:464:-32.1597,0,-54.8337	1/1:60:0,60:0:0:60:2094:-188.73,-18.0618,0	0/1:77:41,36:41:1450:36:1288:-93.0443,0,-107.615	1/1:153:0,152:0:0:152:5424:-487.308,-45.7566,0	1/1:212:0,212:0:0:212:7551:-679.589,-63.8184,0	0/1:38:18,20:18:636:20:708:-52.6065,0,-46.1289	1/1:72:0,72:0:0:72:2555:-230.201,-21.6742,0	0/1:9:8,1:8:279:1:36:-0.889005,0,-22.7383	0/1:149:65,84:65:2324:84:2982:-223.655,0,-164.567	0/1:81:44,37:44:1567:37:1312:-93.9982,0,-116.937	1/1:243:1,242:1:36:242:8554:-766.106,-69.552,0	1/1:172:0,172:0:0:172:6138:-552.398,-51.7772,0	1/1:125:0,125:0:0:125:4463:-401.792,-37.6288,0	0/1:155:74,81:74:2623:81:2865:-211.211,0,-189.657	1/1:292:3,289:3:99:289:10264:-914.22,-78.6642,0	0/1:33:15,18:15:523:18:644:-48.3566,0,-37.4563	0/1:78:41,37:41:1468:37:1315:-95.1707,0,-108.936	1/1:76:0,76:0:0:76:2707:-243.874,-22.8783,0	0/1:96:37,59:37:1328:59:2100:-160.371,0,-90.9234	0/1:161:85,76:85:2976:76:2703:-195.003,0,-219.609	0/1:147:99,48:99:3536:48:1702:-109.204,0,-274.198	1/1:172:0,172:0:0:172:6090:-548.082,-51.7772,0	1/1:237:0,237:0:0:237:8428:-757.788,-71.3441,0
chr09	22072365	.	G	A	29751.7	PASS	AB=0.568838;ABP=125.584;AC=54;AF=0.287234;AN=188;AO=1699;CIGAR=1X;DP=5979;DPB=5979;DPRA=0.873286;EPP=3674.99;EPPR=9268.69;GTI=1;LEN=1;MEANALT=1.03704;MQM=59.9923;MQMR=59.9981;NS=94;NUMALT=1;ODDS=1.06605;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60820;QR=151826;RO=4275;RPL=1697;RPP=3674.99;RPPR=9268.69;RPR=2;RUN=1;SAF=0;SAP=3692.34;SAR=1699;SRF=0;SRP=9286.05;SRR=4275;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1019:0:0:0,-8.72987,-92.0213	0/0:22:22,0:22:767:0:0:0,-6.62266,-69.3494	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/0:166:165,1:165:5870:1:36:0,-46.3727,-524.816	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:89:46,43:46:1632:43:1540:-112.101,0,-120.377	0/1:99:34,65:34:1211:65:2332:-180.338,0,-79.4935	0/1:64:20,44:20:716:44:1557:-121.154,0,-45.5018	0/0:60:60,0:60:2127:0:0:0,-18.0618,-191.698	0/1:40:18,22:18:640:22:792:-59.5645,0,-45.8881	0/0:90:90,0:90:3198:0:0:0,-27.0927,-288.044	0/0:73:73,0:73:2587:0:0:0,-21.9752,-233.08	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:57:31,26:31:1099:26:936:-67.4008,0,-82.0607	0/1:39:20,19:20:702:19:680:-49.789,0,-51.7623	0/1:32:13,19:13:456:19:684:-52.2574,0,-31.7403	0/1:28:11,17:11:396:17:608:-46.6232,0,-27.5539	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/0:103:102,0:102:3634:0:0:0,-30.7051,-326.905	0/1:149:34,114:34:1208:114:4096:-323.912,0,-64.1139	0/1:77:31,46:31:1100:46:1652:-125.789,0,-76.131	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/0:182:182,0:182:6453:0:0:0,-54.7875,-580.863	0/1:181:87,94:87:3102:94:3360:-248.131,0,-224.92	0/1:43:22,21:22:784:21:748:-54.701,0,-57.9396	0/0:190:190,0:190:6757:0:0:0,-57.1957,-608.208	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:64:32,31:32:1143:31:1104:-80.346,0,-83.8541	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:179:76,103:76:2720:103:3688:-278.238,0,-191.159	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:87:26,61:26:917:61:2180:-170.277,0,-56.655	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/1:80:33,47:33:1184:47:1692:-128.484,0,-82.7859	0/1:70:31,39:31:1100:39:1391:-104.416,0,-78.2382	0/1:64:32,32:32:1131:32:1131:-82.8318,0,-82.8318	0/1:88:41,47:41:1476:47:1686:-125.536,0,-106.646	0/1:81:31,50:31:1098:50:1790:-136.999,0,-74.7452	0/0:89:89,0:89:3141:0:0:0,-26.7917,-282.917	0/0:70:69,0:69:2444:0:0:0,-20.7711,-219.857	0/1:87:29,58:29:1044:58:2088:-162,0,-68.0852	0/0:33:33,0:33:1154:0:0:0,-9.93399,-104.165	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/1:29:10,19:10:352:19:684:-53.1605,0,-23.2883	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:116:116,0:116:4065:0:0:0,-34.9195,-366.044	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:41:27,14:27:955:14:500:-32.9939,0,-73.9226	0/0:85:85,0:85:3018:0:0:0,-25.5875,-271.851	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:139:58,81:58:2068:81:2904:-219.752,0,-144.54	0/0:89:87,2:87:3099:2:72:0,-19.9549,-272.301	0/1:40:24,16:24:860:16:576:-40.1338,0,-65.6806	0/1:90:48,42:48:1708:42:1496:-107.842,0,-126.913	0/1:128:47,81:47:1672:81:2883:-221.172,0,-112.235	0/0:82:82,0:82:2903:0:0:0,-24.6845,-261.507	0/0:41:41,0:41:1438:0:0:0,-12.3422,-129.714	0/1:48:15,33:15:528:33:1184:-92.4189,0,-33.4019	0/0:39:39,0:39:1378:0:0:0,-11.7402,-124.317	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:63:63,0:63:2204:0:0:0,-18.9649,-198.624	0/1:82:36,46:36:1284:46:1652:-124.281,0,-91.179	0/0:60:60,0:60:2127:0:0:0,-18.0618,-191.698	0/0:98:98,0:98:3475:0:0:0,-29.5009,-312.964	0/1:38:20,18:20:712:18:648:-47.2127,0,-52.9675	0/0:74:73,0:73:2612:0:0:0,-21.9752,-234.968	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:87:51,36:51:1810:36:1296:-90.7543,0,-136.991	0/1:81:37,44:37:1316:44:1565:-116.756,0,-94.3584	0/0:115:115,0:115:4108:0:0:0,-34.6184,-369.906	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.073	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.651	0/1:44:23,21:23:803:21:756:-55.1219,0,-59.343	0/0:117:117,0:117:4146:0:0:0,-35.2205,-373.326	0/1:30:15,15:15:540:15:536:-39.5357,0,-39.9056	0/1:77:37,40:37:1298:40:1423:-105.187,0,-93.9404	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/1:39:22,17:22:776:17:603:-42.8593,0,-58.422	0/1:71:33,38:33:1151:38:1368:-102.048,0,-82.5222	0/1:78:25,53:25:879:53:1891:-146.987,0,-55.9465	0/0:86:86,0:86:3037:0:0:0,-25.8886,-273.561	0/0:112:112,0:112:3985:0:0:0,-33.7154,-358.84
chr09	22157534	.	A	C	32323.6	PASS	AB=0.507384;ABP=4.80612;AC=52;AF=0.276596;AN=188;AO=1931;CIGAR=1X;DP=8006;DPB=8006;DPRA=0.812888;EPP=4170.11;EPPR=13095;GTI=2;LEN=1;MEANALT=1.03636;MQM=59.9865;MQMR=59.9931;NS=94;NUMALT=1;ODDS=2.14135;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68642;QR=217533;RO=6069;RPL=3;RPP=4170.11;RPPR=13103.6;RPR=1928;RUN=1;SAF=1931;SAP=4196.12;SAR=0;SRF=6068;SRP=13173;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:74:74,0:74:2637:0:0:0,-22.2762,-237.576	0/0:78:78,0:78:2769:0:0:0,-23.4803,-249.451	0/0:127:127,0:127:4540:0:0:0,-38.2308,-408.768	0/1:58:25,33:25:900:33:1188:-89.7689,0,-63.8613	0/1:63:34,29:34:1216:29:1032:-74.2286,0,-90.7817	0/1:102:55,47:55:1968:47:1680:-120.782,0,-146.69	0/1:125:53,72:53:1900:72:2539:-191.134,0,-133.649	0/1:63:39,24:39:1400:24:837:-56.6802,0,-107.334	0/0:74:74,0:74:2633:0:0:0,-22.2762,-237.216	0/1:90:41,49:41:1476:49:1752:-130.871,0,-106.043	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.8	0/1:53:27,26:27:972:26:932:-68.2443,0,-71.8433	0/1:62:38,24:38:1368:24:852:-58.2794,0,-104.757	0/1:90:43,47:43:1548:47:1635:-120.342,0,-112.52	0/1:53:27,26:27:972:26:936:-68.6049,0,-71.8433	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:121:121,0:121:4336:0:0:0,-36.4246,-390.415	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/1:37:10,27:10:360:27:959:-75.4857,0,-21.6062	0/1:133:64,68:64:2304:68:2412:-177.242,0,-167.525	0/0:30:28,2:28:1008:2:68:0,-2.57319,-84.5786	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:264:264,0:264:9438:0:0:0,-79.4719,-849.364	0/1:148:54,94:54:1940:94:3354:-257.524,0,-130.324	0/1:38:18,20:18:644:20:712:-52.9675,0,-46.8515	0/0:263:260,0:260:9316:0:0:0,-78.2678,-838.045	0/0:133:133,0:133:4746:0:0:0,-40.037,-427.296	0/1:386:198,188:198:7096:188:6653:-482.655,0,-522.501	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9197	0/1:191:103,88:103:3708:88:3135:-224.878,0,-276.423	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.611	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:96:46,50:46:1656:50:1779:-131.493,0,-120.43	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:106:47,59:47:1672:59:2088:-156.279,0,-118.858	0/1:59:33,26:33:1180:26:923:-65.626,0,-88.7473	0/1:66:26,40:26:932:40:1428:-108.95,0,-64.3309	0/1:45:20,25:20:720:25:892:-67.0533,0,-51.5824	0/1:86:42,44:42:1508:44:1563:-115.072,0,-110.126	0/0:108:107,0:107:3848:0:0:0,-32.2102,-346.154	0/0:104:104,0:104:3740:0:0:0,-31.3071,-336.799	0/1:106:49,57:49:1756:57:2048:-152.682,0,-126.415	0/0:131:131,0:131:4692:0:0:0,-39.4349,-422.44	0/1:13:6,7:6:216:7:240:-18.0213,0,-15.8771	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/1:38:25,13:25:900:13:459:-30.2049,0,-69.8819	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/1:27:13,14:13:453:14:504:-37.5703,0,-32.9718	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:25:17,8:17:612:8:288:-18.7417,0,-47.8877	0/1:93:43,50:43:1544:50:1758:-130.506,0,-111.257	0/0:189:188,1:188:6740:1:36:0,-53.2964,-603.075	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:150:84,66:84:3016:66:2355:-167.054,0,-226.516	0/0:116:115,1:115:4116:1:36:0,-31.3212,-367.027	0/1:79:47,32:47:1692:32:1127:-77.9561,0,-128.785	0/1:78:38,39:38:1352:39:1391:-101.949,0,-98.4413	0/1:128:70,58:70:2520:58:2043:-145.607,0,-188.519	0/0:130:130,0:130:4653:0:0:0,-39.1339,-418.93	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:67:33,34:33:1184:34:1220:-89.9378,0,-86.6993	0/0:80:80,0:80:2857:0:0:0,-24.0824,-257.366	0/1:37:18,19:18:640:19:680:-50.3911,0,-46.7912	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:72:37,35:37:1328:35:1256:-91.6711,0,-98.1481	0/0:141:141,0:141:5056:0:0:0,-42.4452,-455.184	0/0:145:145,0:145:5192:0:0:0,-43.6493,-467.408	0/1:93:56,37:56:2008:37:1309:-90.1146,0,-152.998	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:62:22,40:22:788:40:1428:-110.154,0,-52.5809	0/1:66:36,30:36:1292:30:1068:-76.5641,0,-96.7158	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.728	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.102	0/1:72:31,41:31:1108:41:1468:-110.742,0,-78.3568	0/0:147:146,1:146:5248:1:36:0,-40.6531,-468.856	0/1:31:16,15:16:576:15:528:-38.5194,0,-42.8431	0/1:68:34,34:34:1224:34:1207:-88.4652,0,-89.997	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:61:31,30:31:1116:30:1063:-77.618,0,-82.3889	0/1:135:60,75:60:2152:75:2675:-200.356,0,-153.308	0/1:83:32,51:32:1144:51:1810:-138.195,0,-78.284	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/0:107:107,0:107:3837:0:0:0,-32.2102,-345.524
chr09	22193834	.	A	G	216425	PASS	AB=0.44398;ABP=179.153;AC=135;AF=0.718085;AN=188;AO=9804;CIGAR=1X;DP=13431;DPB=13431;DPRA=144.409;EPP=20220.2;EPPR=7450.4;GTI=1;LEN=1;MEANALT=1.04301;MQM=44.0279;MQMR=46.5415;NS=94;NUMALT=1;ODDS=0.20002;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=349629;QR=129315;RO=3623;RPL=4179;RPP=466.124;RPPR=8.8846;RPR=5625;RUN=1;SAF=4304;SAP=319.831;SAR=5500;SRF=1811;SRP=3.0109;SRR=1812;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:467:-42.3692,-3.91339,0	1/1:135:0,135:0:0:135:4795:-431.706,-40.6391,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:281:0,281:0:0:281:9971:-725.978,-84.5894,0	0/1:48:24,24:24:860:24:860:-44.4754,0,-56.7347	0/1:68:47,21:47:1676:21:735:-45.0553,0,-119.84	0/1:176:93,83:93:3324:83:2963:-187.761,0,-240.371	0/1:135:92,43:92:3287:43:1516:-96.0913,0,-232.578	0/1:132:92,40:92:3284:40:1416:-87.9892,0,-219.222	1/1:172:0,172:0:0:172:6149:-441.105,-51.7772,0	0/1:108:57,51:57:2040:51:1781:-105.778,0,-145.278	1/1:87:1,86:1:36:86:3032:-270.191,-23.2868,0	1/1:72:0,72:0:0:72:2554:-230.11,-21.6742,0	1/1:146:0,146:0:0:146:5184:-413.938,-43.9504,0	0/1:165:89,76:89:3195:76:2698:-149.393,0,-218.276	0/1:150:83,67:83:2926:67:2388:-131.089,0,-194.236	0/1:94:48,46:48:1719:46:1607:-116.619,0,-119.099	0/1:90:49,41:49:1747:41:1460:-104.603,0,-121.529	1/1:48:0,48:0:0:48:1700:-153.285,-14.4494,0	1/1:244:0,244:0:0:244:8712:-604.62,-73.4513,0	1/1:271:0,271:0:0:271:9662:-658.782,-81.5791,0	0/1:98:67,31:67:2392:31:1093:-45.0991,0,-169.591	0/1:218:119,99:119:4240:99:3539:-181.592,0,-286.804	1/1:170:1,169:1:36:169:6038:-462.786,-47.5768,0	1/1:130:0,130:0:0:130:4639:-309.371,-39.1339,0	1/1:482:0,481:0:0:481:17142:-1355.99,-144.795,0	0/1:415:205,210:205:7336:210:7492:-380.164,0,-465.386	0/1:67:29,38:29:1036:38:1338:-72.9637,0,-65.3204	1/1:354:0,353:0:0:353:12624:-916.329,-106.264,0	1/1:150:1,149:1:36:149:5288:-386.187,-42.1,0	0/1:191:101,90:101:3597:90:3210:-192.723,0,-251.759	1/1:4:0,4:0:0:4:144:-11.9106,-1.20412,0	0/1:16:12,4:12:417:4:129:-2.63944,0,-29.0926	0/1:7:2,5:2:59:5:176:-14.0778,0,-3.10592	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:16:15,1:15:540:1:36:0,-1.2182,-35.8793	0/1:343:165,178:165:5867:178:6367:-395.211,0,-405.695	1/1:139:0,139:0:0:139:4962:-364.687,-41.8432,0	1/1:68:0,68:0:0:68:2415:-217.606,-20.47,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:194:102,92:102:3648:92:3276:-173.321,0,-251.919	1/1:91:0,91:0:0:91:3260:-219.038,-27.3937,0	0/1:229:133,96:133:4729:96:3431:-161.118,0,-309.76	0/1:147:80,67:80:2841:67:2390:-145.428,0,-203.698	0/1:135:66,69:66:2376:69:2472:-141.813,0,-162.208	0/1:183:106,77:106:3791:77:2772:-159.792,0,-274.947	0/1:111:92,19:92:3295:19:680:-28.1148,0,-224.847	1/1:225:0,225:0:0:225:8053:-581.183,-67.7318,0	1/1:188:0,188:0:0:188:6701:-497.569,-56.5936,0	0/1:214:118,96:118:4219:96:3425:-188.44,0,-296.492	1/1:198:0,198:0:0:198:7045:-513.476,-59.6039,0	0/1:17:10,7:10:360:7:252:-11.8799,0,-24.3551	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:117:59,58:59:2116:58:2088:-114.033,0,-147.894	0/1:10:9,1:9:324:1:36:-0.587975,0,-25.8619	1/1:254:0,254:0:0:254:9111:-582.089,-76.4616,0	0/1:93:38,55:38:1355:55:1959:-107.276,0,-85.2378	1/1:6:0,6:0:0:6:212:-18.3877,-1.80618,0	0/1:28:16,12:16:576:12:424:-23.1948,0,-40.763	0/1:158:81,77:81:2891:77:2760:-153.729,0,-194.761	1/1:148:0,148:0:0:148:5280:-408.725,-44.5524,0	0/1:4:3,1:3:108:1:36:-1.07475,0,-8.87105	0/1:336:175,161:175:6261:161:5760:-364.211,0,-439.331	1/1:305:1,303:1:36:303:10838:-839.561,-88.2087,0	0/1:90:36,54:36:1279:54:1931:-104.683,0,-78.6102	0/1:133:73,60:73:2620:60:2136:-121.347,0,-178.667	0/1:270:145,125:145:5134:125:4456:-261.583,0,-353.892	1/1:220:0,220:0:0:220:7868:-539.237,-66.2266,0	1/1:59:0,59:0:0:59:2116:-157.99,-17.7608,0	0/1:101:67,34:67:2400:34:1220:-79.7028,0,-156.957	1/1:162:0,162:0:0:162:5802:-488.973,-48.7669,0	0/1:55:24,31:24:856:31:1112:-62.3837,0,-56.6997	1/1:47:1,46:1:36:46:1648:-145.01,-10.5501,0	0/1:130:92,38:92:3246:38:1349:-82.5744,0,-223.542	1/1:285:0,285:0:0:285:10139:-765.526,-85.7936,0	1/1:211:0,211:0:0:211:7511:-564.397,-63.5173,0	0/1:80:65,15:65:2320:15:527:-23.6778,0,-163.551	1/1:130:9,121:9:324:121:4312:-361.437,-12.3146,0	0/1:14:9,5:9:320:5:176:-11.9706,0,-22.0182	0/1:270:153,117:153:5484:117:4195:-202.66,0,-369.854	0/1:133:101,32:101:3615:32:1136:-62.5113,0,-249.295	1/1:362:0,362:0:0:362:12880:-888.368,-108.973,0	1/1:154:0,153:0:0:153:5450:-448.859,-46.0576,0	1/1:151:0,151:0:0:151:5395:-405.337,-45.4555,0	0/1:143:67,76:67:2400:76:2702:-181.348,0,-167.672	1/1:220:0,220:0:0:220:7825:-611.532,-66.2266,0	0/1:36:19,17:19:669:17:612:-44.5764,0,-45.2895	0/1:109:74,35:74:2643:35:1237:-78.8214,0,-188.113	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	0/1:78:36,42:36:1296:42:1508:-94.8007,0,-88.5549	0/1:173:72,101:72:2545:101:3609:-214.702,0,-162.007	0/1:150:98,52:98:3516:52:1859:-97.4423,0,-249.586	1/1:145:0,145:0:0:145:5170:-363.617,-43.6494,0	1/1:228:0,228:0:0:228:8154:-588.392,-68.6348,0
chr09	22236531	.	T	C	122349	PASS	AB=0.495168;ABP=3.72384;AC=137;AF=0.728723;AN=188;AO=5845;CIGAR=1X;DP=7641;DPB=7641;DPRA=41.0699;EPP=12634.5;EPPR=3831.49;GTI=2;LEN=1;MEANALT=1.08602;MQM=49.2635;MQMR=59.9815;NS=94;NUMALT=1;ODDS=1.1114;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208473;QR=63929;RO=1787;RPL=7;RPP=12634.5;RPPR=3831.49;RPR=5838;RUN=1;SAF=5845;SAP=12695.3;SAR=0;SRF=1787;SRP=3883.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49:0:0:49:1729:-153.769,-14.7505,0	1/1:77:0,76:0:0:76:2702:-233.671,-22.8783,0	1/1:126:1,124:1:36:124:4443:-384.357,-34.3903,0	1/1:180:0,180:0:0:180:6388:-572.407,-54.1854,0	0/1:63:20,43:20:716:43:1526:-117.653,0,-45.8028	0/1:47:19,28:19:676:28:1000:-75.1632,0,-47.0196	0/1:140:63,76:63:2256:76:2705:-200.375,0,-161.1	0/1:130:70,60:70:2507:60:2152:-152.477,0,-186.748	0/1:100:37,63:37:1319:63:2244:-169.866,0,-88.7505	1/1:109:0,109:0:0:109:3904:-350.306,-32.8123,0	0/1:35:19,16:19:680:16:572:-41.0875,0,-50.9931	1/1:94:0,94:0:0:94:3356:-298.267,-28.2968,0	1/1:60:0,60:0:0:60:2135:-189.182,-18.0618,0	1/1:29:0,29:0:0:29:1044:-93.2776,-8.72987,0	0/1:81:37,44:37:1328:44:1576:-117.065,0,-95.4388	0/1:46:24,22:24:852:22:784:-54.4385,0,-63.153	0/1:37:15,22:15:540:22:792:-59.5739,0,-37.7984	0/1:24:12,12:12:432:12:428:-31.2231,0,-31.9965	1/1:28:0,28:0:0:28:1004:-89.6086,-8.42884,0	1/1:183:0,182:0:0:182:6514:-583.941,-54.7875,0	1/1:149:0,149:0:0:149:5314:-475.171,-44.8535,0	0/1:115:83,32:83:2976:32:1139:-67.9732,0,-233.454	0/1:67:45,22:45:1608:22:792:-50.9659,0,-124.841	1/1:32:0,32:0:0:32:1152:-103.12,-9.63296,0	1/1:82:0,82:0:0:82:2914:-259.119,-24.6845,0	1/1:206:0,206:0:0:206:7337:-656.303,-62.0122,0	0/1:194:102,92:102:3646:92:3284:-235.489,0,-269.944	0/1:39:13,26:13:468:26:928:-71.6167,0,-30.7195	1/1:181:0,180:0:0:180:6401:-573.599,-54.1854,0	1/1:140:1,139:1:36:139:4944:-438.471,-38.5459,0	0/1:76:44,32:44:1571:32:1130:-78.7873,0,-118.803	1/1:14:0,14:0:0:14:500:-45.0624,-4.21442,0	0/1:4:2,2:2:72:2:72:-5.59554,0,-5.6326	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	1/1:3:0,3:0:0:3:108:-9.97178,-0.90309,0	0/1:15:10,5:10:360:5:180:-11.8542,0,-28.2289	0/1:183:89,94:89:3191:94:3359:-246.568,0,-232.324	1/1:91:0,91:0:0:91:3261:-290.949,-27.3937,0	1/1:29:0,29:0:0:29:1040:-92.9323,-8.72987,0	1/1:1:0,1:0:0:1:36:-3.54852,-0.30103,0	0/1:142:47,95:47:1680:95:3374:-258.832,0,-108.741	1/1:26:0,26:0:0:26:928:-83.349,-7.82678,0	0/1:124:61,63:61:2192:63:2268:-165.579,0,-160.218	0/1:65:40,25:40:1431:25:887:-60.0779,0,-109.52	0/1:59:29,30:29:1036:30:1068:-78.2069,0,-75.7931	0/1:139:82,57:82:2948:57:2010:-138.968,0,-223.71	0/1:100:50,50:50:1780:50:1770:-127.75,0,-130.38	1/1:124:5,119:5:180:119:4264:-364.436,-20.7757,0	1/1:123:0,123:0:0:123:4415:-395.494,-37.0267,0	0/1:90:41,49:41:1468:49:1730:-128.279,0,-105.323	1/1:109:0,109:0:0:109:3851:-345.623,-32.8123,0	0/1:9:5,4:5:180:4:144:-10.5607,0,-13.8428	1/1:120:0,120:0:0:120:4282:-381.111,-36.1236,0	0/1:42:17,25:17:612:25:896:-67.986,0,-42.7702	0/1:5:1,4:1:32:4:144:-11.6617,0,-1.69416	1/1:119:0,119:0:0:119:4228:-375.516,-35.8226,0	0/1:18:9,9:9:324:9:324:-24.0014,0,-24.0873	1/1:14:0,14:0:0:14:504:-45.6111,-4.21442,0	0/1:14:9,5:9:320:5:180:-12.3061,0,-24.9279	0/1:69:50,19:50:1769:19:680:-40.2055,0,-138.72	1/1:95:0,95:0:0:95:3387:-303.383,-28.5979,0	0/1:9:8,1:8:288:1:36:-0.877213,0,-23.5581	0/1:179:91,88:91:3248:88:3093:-223.48,0,-238.658	1/1:127:2,125:2:54:125:4468:-393.445,-33.1012,0	0/1:81:29,52:29:1044:52:1852:-141.286,0,-69.8914	0/1:69:41,28:41:1459:28:991:-68.3804,0,-110.834	0/1:100:47,53:47:1684:53:1891:-139.775,0,-121.722	1/1:119:0,119:0:0:119:4228:-379.336,-35.8226,0	1/1:20:0,20:0:0:20:720:-64.7204,-6.0206,0	0/1:66:23,43:23:820:43:1544:-117.834,0,-54.2545	1/1:43:0,43:0:0:43:1523:-136.073,-12.9443,0	0/1:19:12,7:12:428:7:252:-17.2339,0,-33.1392	1/1:113:0,113:0:0:113:4025:-358.592,-34.0164,0	0/1:119:58,61:58:2084:61:2188:-159.224,0,-152.007	1/1:72:0,72:0:0:72:2572:-229.92,-21.6742,0	1/1:185:0,183:0:0:183:6542:-585.92,-55.0885,0	0/1:86:38,48:38:1356:48:1715:-127.078,0,-96.4519	1/1:109:1,107:1:36:107:3830:-336.89,-29.2728,0	0/1:15:6,9:6:216:9:324:-24.6309,0,-15.2751	0/1:93:39,54:39:1404:54:1901:-142.403,0,-98.6635	0/1:119:77,41:77:2763:41:1451:-93.4683,0,-213.177	1/1:218:0,218:0:0:218:7794:-698.503,-65.6245,0	1/1:52:0,52:0:0:52:1860:-167.08,-15.6536,0	1/1:49:0,49:0:0:49:1760:-157.958,-14.7505,0	0/1:39:20,19:20:716:19:675:-49.1062,0,-53.0275	1/1:150:1,149:1:36:149:5324:-473.581,-41.5562,0	0/1:21:10,11:10:356:11:396:-29.2304,0,-26.0596	0/1:64:32,32:32:1148:32:1152:-83.4762,0,-84.3639	1/1:75:0,75:0:0:75:2663:-236.877,-22.5773,0	0/1:33:13,20:13:468:20:720:-54.8411,0,-32.5257	0/1:62:32,30:32:1139:30:1071:-77.4875,0,-84.1545	0/1:72:53,19:53:1892:19:684:-38.7974,0,-148.884	1/1:85:0,85:0:0:85:3035:-272.477,-25.5876,0	1/1:111:0,111:0:0:111:3970:-355.625,-33.4143,0
chr09	22236549	.	C	T	121880	PASS	AB=0.494007;ABP=4.10347;AC=138;AF=0.734043;AN=188;AO=5832;CIGAR=1X;DP=7620;DPB=7620;DPRA=40.957;EPP=12649.7;EPPR=3872.58;GTI=1;LEN=1;MEANALT=1.02151;MQM=49.2889;MQMR=60;NS=94;NUMALT=1;ODDS=1.15037;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208063;QR=63354;RO=1786;RPL=5829;RPP=12641;RPPR=3872.58;RPR=3;RUN=1;SAF=5831;SAP=12658.4;SAR=1;SRF=1786;SRP=3881.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1619:-143.952,-13.8474,0	1/1:76:1,75:1:36:75:2683:-228.971,-19.28,0	1/1:124:0,124:0:0:124:4432:-387.389,-37.3277,0	1/1:180:0,180:0:0:180:6445:-577.493,-54.1854,0	0/1:60:20,40:20:712:40:1427:-109.693,0,-46.3449	0/1:47:19,28:19:663:28:987:-74.0315,0,-45.845	0/1:140:64,76:64:2270:76:2715:-201.347,0,-162.417	0/1:129:69,60:69:2476:60:2129:-150.985,0,-184.261	0/1:96:37,59:37:1296:59:2116:-159.595,0,-88.0395	1/1:109:0,109:0:0:109:3884:-348.513,-32.8123,0	0/1:36:19,17:19:680:17:612:-44.3625,0,-50.6921	1/1:94:0,94:0:0:94:3335:-296.557,-28.2968,0	1/1:59:0,59:0:0:59:2102:-186.373,-17.7608,0	1/1:30:0,30:0:0:30:1059:-94.6435,-9.0309,0	0/1:82:37,45:37:1305:45:1616:-120.284,0,-93.0649	0/1:46:25,21:25:879:21:748:-51.5746,0,-65.5794	0/1:37:15,22:15:531:22:792:-59.5739,0,-36.9838	0/1:25:12,13:12:423:13:468:-34.4659,0,-30.8793	1/1:29:0,29:0:0:29:1040:-92.7774,-8.72987,0	1/1:184:0,184:0:0:184:6595:-591.229,-55.3895,0	1/1:152:0,152:0:0:152:5400:-482.93,-45.7566,0	0/1:113:81,32:81:2883:32:1148:-69.3705,0,-225.691	0/1:69:47,22:47:1680:22:792:-50.3638,0,-130.716	1/1:31:0,31:0:0:31:1090:-97.6347,-9.33193,0	1/1:82:0,82:0:0:82:2934:-260.766,-24.6845,0	1/1:210:0,210:0:0:210:7509:-671.915,-63.2163,0	0/1:200:106,94:106:3771:94:3348:-239.39,0,-279.385	0/1:39:13,26:13:460:26:924:-71.2666,0,-29.9952	1/1:181:0,181:0:0:181:6416:-575.171,-54.4864,0	1/1:139:1,138:1:36:138:4878:-432.664,-38.2449,0	0/1:73:42,31:42:1492:31:1116:-78.4094,0,-112.599	1/1:14:0,14:0:0:14:504:-45.4138,-4.21442,0	0/1:4:2,2:2:72:2:72:-5.59554,0,-5.6326	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:3:0,3:0:0:3:108:-9.97178,-0.90309,0	0/1:15:10,5:10:356:5:180:-11.8542,0,-27.8658	0/1:181:88,92:88:3104:92:3292:-240.943,0,-225.043	1/1:90:0,90:0:0:90:3219:-287.03,-27.0927,0	1/1:29:0,29:0:0:29:1036:-92.593,-8.72987,0	1/1:1:0,1:0:0:1:36:-3.54852,-0.30103,0	0/1:139:47,92:47:1631:92:3263:-249.47,0,-105.229	1/1:26:0,26:0:0:26:914:-82.0897,-7.82678,0	0/1:127:63,64:63:2251:64:2288:-166.578,0,-164.622	0/1:66:41,25:41:1458:25:892:-60.2107,0,-111.647	0/1:58:28,30:28:995:30:1080:-79.5659,0,-72.4043	0/1:143:85,58:85:3040:58:2057:-141.984,0,-230.783	0/1:100:48,52:48:1701:52:1841:-134.028,0,-123.271	1/1:125:6,119:6:212:119:4253:-360.595,-18.204,0	1/1:123:0,123:0:0:123:4389:-393.271,-37.0267,0	0/1:90:40,50:40:1428:50:1783:-133.023,0,-101.725	1/1:108:0,108:0:0:108:3841:-344.978,-32.5112,0	0/1:9:5,4:5:180:4:144:-10.5607,0,-13.8428	1/1:119:0,119:0:0:119:4206:-374.553,-35.8226,0	0/1:41:17,24:17:608:24:860:-65.1367,0,-42.7098	1/1:4:0,4:0:0:4:144:-13.1669,-1.20412,0	1/1:121:0,121:0:0:121:4293:-381.007,-36.4246,0	0/1:18:9,9:9:312:9:324:-24.0014,0,-22.9968	1/1:13:0,13:0:0:13:468:-42.3788,-3.91339,0	0/1:15:9,6:9:316:6:212:-14.8687,0,-24.2634	0/1:69:49,20:49:1728:20:716:-43.4442,0,-135.031	1/1:96:0,96:0:0:96:3415:-305.948,-28.8989,0	0/1:9:8,1:8:284:1:36:-0.877213,0,-23.1941	0/1:173:86,87:86:3062:87:3119:-227.269,0,-223.731	1/1:126:2,124:2:72:124:4448:-391.07,-31.0931,0	0/1:83:31,52:31:1112:52:1872:-142.276,0,-75.4059	0/1:68:41,27:41:1438:27:968:-66.5328,0,-109.242	0/1:95:44,51:44:1562:51:1812:-134.258,0,-112.272	1/1:121:0,121:0:0:121:4327:-388.19,-36.4246,0	1/1:19:0,19:0:0:19:680:-61.1488,-5.71957,0	0/1:65:22,43:22:784:43:1540:-117.796,0,-51.317	1/1:43:0,43:0:0:43:1523:-136.381,-12.9443,0	0/1:17:10,7:10:351:7:237:-16.4765,0,-26.8092	1/1:111:0,111:0:0:111:3963:-353.079,-33.4143,0	0/1:123:59,64:59:2116:64:2296:-167.597,0,-153.682	1/1:71:0,71:0:0:71:2537:-226.723,-21.3731,0	1/1:186:0,186:0:0:186:6653:-596.165,-55.9916,0	0/1:87:39,48:39:1375:48:1709:-126.18,0,-97.8583	1/1:108:1,107:1:36:107:3819:-335.667,-28.913,0	0/1:15:6,9:6:216:9:324:-24.6309,0,-15.2751	0/1:94:41,53:41:1464:53:1889:-140.935,0,-103.759	0/1:116:74,42:74:2619:42:1508:-99.1448,0,-201.039	1/1:217:0,217:0:0:217:7784:-697.973,-65.3235,0	1/1:51:0,51:0:0:51:1823:-163.758,-15.3525,0	1/1:49:0,49:0:0:49:1748:-156.897,-14.7505,0	0/1:40:21,19:21:733:19:676:-48.9052,0,-54.2485	1/1:147:2,145:2:72:145:5195:-458.776,-37.4147,0	0/1:21:11,10:11:392:10:360:-26.0618,0,-29.2984	0/1:65:31,33:31:1103:33:1176:-85.302,0,-79.9542	1/1:75:0,75:0:0:75:2665:-236.861,-22.5773,0	0/1:32:13,19:13:459:19:671:-50.7726,0,-32.0111	0/1:62:33,29:33:1152:29:1022:-73.1383,0,-85.3195	0/1:72:54,18:54:1895:18:648:-35.5944,0,-149.151	1/1:83:0,83:0:0:83:2958:-265.585,-24.9855,0	1/1:109:0,109:0:0:109:3888:-348.259,-32.8123,0
chr09	22236624	.	G	A	175985	PASS	AB=0.485754;ABP=11.7955;AC=137;AF=0.728723;AN=188;AO=8291;CIGAR=1X;DP=10874;DPB=10874;DPRA=0;EPP=18006.7;EPPR=5596.72;GTI=3;LEN=1;MEANALT=1.07447;MQM=59.942;MQMR=59.9852;NS=94;NUMALT=1;ODDS=1.08899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=296706;QR=92276;RO=2576;RPL=8291;RPP=18006.7;RPPR=5596.72;RPR=0;RUN=1;SAF=0;SAP=18006.7;SAR=8291;SRF=0;SRP=5596.72;SRR=2576;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:179:0,179:0:0:179:6362:-572.671,-53.8844,0	1/1:180:0,180:0:0:180:6445:-580.132,-54.1854,0	1/1:184:0,184:0:0:184:6582:-592.461,-55.3895,0	0/1:48:25,22:25:896:22:792:-57.1356,0,-66.4905	0/1:73:32,41:32:1140:41:1472:-110.801,0,-80.934	0/1:147:72,75:72:2572:75:2669:-196.203,0,-187.479	0/1:169:80,89:80:2837:89:3188:-236.27,0,-204.694	0/1:46:25,21:25:900:21:752:-54.1589,0,-67.4736	1/1:149:1,148:1:36:148:5296:-473.174,-41.2552,0	0/1:167:84,83:84:3000:83:2980:-218.16,0,-219.96	1/1:109:0,109:0:0:109:3892:-350.419,-32.8123,0	1/1:83:0,83:0:0:83:2969:-267.441,-24.9855,0	1/1:199:0,199:0:0:199:7119:-640.767,-59.905,0	0/1:75:37,38:37:1332:38:1360:-100.123,0,-97.6051	0/1:76:33,43:33:1188:43:1540:-116.009,0,-84.3503	0/1:172:86,85:86:3083:85:3060:-223.792,0,-225.861	0/1:81:44,37:44:1580:37:1332:-95.799,0,-118.108	1/1:81:0,81:0:0:81:2884:-259.795,-24.3834,0	1/1:211:0,211:0:0:211:7560:-680.439,-63.5173,0	1/1:108:0,108:0:0:108:3871:-348.575,-32.5112,0	0/1:141:94,46:94:3364:46:1648:-106.251,0,-260.064	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	1/1:103:0,103:0:0:103:3696:-332.842,-31.0061,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:351:1,350:1:36:350:12500:-1121.18,-102.063,0	0/1:196:105,91:105:3764:91:3264:-234.97,0,-279.957	0/1:53:21,32:21:747:32:1152:-88.0356,0,-51.5997	1/1:206:0,206:0:0:206:7348:-661.37,-62.0122,0	1/1:171:1,170:1:36:170:6035:-539.601,-47.8779,0	0/1:66:29,37:29:1036:37:1328:-99.9543,0,-73.6859	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:231:106,124:106:3816:124:4460:-331.971,0,-274.039	1/1:256:0,256:0:0:256:9158:-822.387,-77.0637,0	1/1:119:0,119:0:0:119:4256:-383.218,-35.8226,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:157:69,88:69:2460:88:3164:-237.722,0,-174.393	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:128:66,62:66:2376:62:2224:-161.892,0,-175.566	0/1:93:49,44:49:1756:44:1580:-114.496,0,-130.328	0/1:90:43,47:43:1544:47:1688:-125.114,0,-112.16	0/1:64:42,21:42:1492:21:744:-47.9599,0,-115.25	0/1:124:64,60:64:2296:60:2152:-156.609,0,-169.573	1/1:157:4,153:4:144:153:5438:-476.19,-33.9481,0	1/1:112:0,112:0:0:112:4020:-361.987,-33.7154,0	0/1:260:143,117:143:5144:117:4196:-299.553,0,-384.831	1/1:119:2,117:2:72:117:4184:-369.906,-28.9858,0	0/1:20:12,8:12:432:8:284:-19.8828,0,-33.2006	1/1:150:0,150:0:0:150:5380:-484.33,-45.1545,0	0/1:41:19,22:19:684:22:792:-59.2634,0,-49.5481	0/1:33:14,19:14:500:19:684:-51.9563,0,-35.4022	1/1:149:0,149:0:0:149:5340:-479.543,-44.8535,0	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:42:20,22:20:712:22:788:-58.6015,0,-51.7634	0/1:91:57,34:57:2025:34:1224:-83.0733,0,-155.127	1/1:241:3,238:3:108:238:8535:-758.06,-62.4731,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:258:163,95:163:5840:95:3412:-229.628,0,-448.046	1/1:210:1,209:1:36:209:7488:-670.357,-59.618,0	0/1:120:66,54:66:2360:54:1940:-138.753,0,-176.535	0/1:114:54,60:54:1936:60:2160:-160.349,0,-140.199	0/1:135:62,73:62:2212:73:2620:-195.408,0,-158.706	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:97:0,97:0:0:97:3480:-312.711,-29.1999,0	0/1:74:48,26:48:1728:26:936:-62.2832,0,-133.529	1/1:148:1,147:1:36:147:5276:-471.374,-40.9542,0	0/1:35:23,12:23:816:12:428:-28.3228,0,-63.2257	1/1:123:0,123:0:0:123:4396:-395.806,-37.0267,0	0/1:92:42,50:42:1508:50:1792:-133.868,0,-108.32	1/1:154:0,154:0:0:154:5468:-492.25,-46.3586,0	1/1:164:1,163:1:36:163:5844:-522.455,-45.7706,0	0/1:129:67,62:67:2404:62:2232:-162.311,0,-177.784	1/1:214:2,212:2:72:212:7550:-672.682,-57.5837,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:159:78,80:78:2796:80:2868:-210.442,0,-203.965	0/1:169:85,84:85:3036:84:3018:-220.976,0,-222.592	1/1:178:1,177:1:36:177:6325:-565.741,-49.9851,0	1/1:115:0,115:0:0:115:4096:-368.822,-34.6185,0	1/1:126:0,126:0:0:126:4511:-405.054,-37.9298,0	0/1:121:61,60:61:2184:60:2156:-157.882,0,-160.401	1/1:182:1,181:1:36:181:6479:-578.897,-51.1892,0	0/1:44:20,24:20:720:24:851:-63.6465,0,-51.8835	0/1:99:45,54:45:1616:54:1914:-142.734,0,-115.928	1/1:103:0,103:0:0:103:3696:-332.842,-31.0061,0	0/1:125:56,69:56:2004:69:2467:-184.655,0,-143.005	0/1:237:99,138:99:3552:138:4926:-371.042,0,-248.544	0/1:101:70,31:70:2512:31:1101:-68.9943,0,-195.928	1/1:108:0,108:0:0:108:3872:-348.674,-32.5112,0	1/1:107:0,106:0:0:106:3793:-341.207,-31.9092,0
chr09	22330611	.	TCACA	TCACC,TCACG	161703	PASS	AB=0.494232,0.499261;ABP=3.98717,3.02636;AC=138,48;AF=0.741935,0.258065;AN=186;AO=5784,1694;CIGAR=4M1X,4M1X;DP=7527;DPB=7527;DPRA=0,0.843245;EPP=12424.2,3655.47;EPPR=10.7656;GTI=2;LEN=1,1;MEANALT=1.95699,2.30189;MQM=59.978,59.9847;MQMR=60;NS=93;NUMALT=2;ODDS=0.163357;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=205794,59987;QR=236;RO=7;RPL=5768,1691;RPP=12424.2,3655.47;RPPR=10.7656;RPR=16,3;RUN=1,1;SAF=0,0;SAP=12562.8,3681.48;SAR=5784,1694;SRF=0;SRP=18.2106;SRR=7;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44,0:0:0:44,0:1566,0:-141.23,-13.2453,0,-141.23,-13.2453,-141.23	1/1:99:0,99,0:0:0:99,0:3513,0:-316.381,-29.802,0,-316.381,-29.802,-316.381	1/1:90:0,90,0:0:0:90,0:3198,0:-288.044,-27.0927,0,-288.044,-27.0927,-288.044	1/1:188:0,183,0:0:0:183,0:6484,0:-583.312,-55.0885,0,-583.312,-55.0885,-583.312	1/2:72:0,29,43:0:0:29,43:1035,1527:-209.155,-124.778,-116.048,-84.7332,0,-71.7889	1/2:50:0,25,23:0:0:25,23:891,811:-138.655,-66.027,-58.5013,-72.6235,0,-65.6998	1/2:72:0,43,29:0:0:43,29:1531,1035:-209.515,-84.7332,-71.7889,-125.138,0,-116.408	1/2:165:1,85,78:1:36:85,78:3029,2778:-470.119,-223.523,-200.873,-243.995,0,-223.452	1/2:116:2,53,61:2:66:53,61:1875,2145:-321.37,-169.251,-158.632,-147.408,0,-134.38	1/1:78:1,77,0:1:35:77,0:2736,0:-242.985,-19.9817,0,-243.286,-23.1793,-246.134	1/2:39:0,17,22:0:0:17,22:603,792:-114.108,-64.983,-59.8655,-49.482,0,-42.8593	1/1:59:0,58,0:0:0:58,0:2038,0:-183.332,-17.4597,0,-183.332,-17.4597,-183.332	1/1:61:0,61,0:0:0:61,0:2172,0:-195.747,-18.3628,0,-195.747,-18.3628,-195.747	1/1:65:0,65,0:0:0:65,0:2316,0:-208.701,-19.567,0,-208.701,-19.567,-208.701	1/2:66:0,36,30:0:0:36,30:1284,1076:-192.791,-88.122,-77.2849,-105.026,0,-95.9954	1/2:53:0,24,29:0:0:24,29:838,1036:-152.983,-84.824,-77.5993,-68.5116,0,-59.7817	1/2:66:0,28,36:0:0:28,36:1000,1284:-186.259,-104.728,-96.2993,-81.5875,0,-70.7504	1/2:65:0,29,35:0:0:29,35:1036,1245:-185.925,-101.458,-92.7279,-84.4643,0,-73.9283	1/1:24:0,24,0:0:0:24,0:856,0:-77.3611,-7.22472,0,-77.3611,-7.22472,-77.3611	1/1:123:0,123,0:0:0:123,0:4364,0:-392.928,-37.0267,0,-392.928,-37.0267,-392.928	1/1:138:0,137,0:0:0:137,0:4899,0:-440.801,-41.2411,0,-440.801,-41.2411,-440.801	1/2:85:0,33,51:0:0:33,51:1176,1816:-243.975,-148.117,-138.183,-95.9607,0,-80.6081	1/2:25:0,14,11:0:0:14,11:500,383:-72.2617,-31.4919,-27.2775,-41.1218,0,-37.8104	1/1:123:0,123,0:0:0:123,0:4382,0:-394.554,-37.0267,0,-394.554,-37.0267,-394.554	1/1:65:0,65,0:0:0:65,0:2303,0:-207.531,-19.567,0,-207.531,-19.567,-207.531	1/1:193:0,192,1:0:0:192,1:6826,27:-614.145,-57.7978,0,-612.017,-55.399,-611.716	1/2:172:1,84,87:1:34:84,87:2979,3045:-487.398,-244.995,-222.467,-239.958,0,-216.526	1/2:37:0,19,18:0:0:19,18:675,636:-107.153,-52.1495,-46.4299,-55.3574,0,-49.9388	1/1:171:0,171,0:0:0:171,0:6098,0:-548.922,-51.4761,0,-548.922,-51.4761,-548.922	1/1:130:0,129,1:0:0:129,1:4600,36:-413.8,-38.8329,0,-410.862,-35.5356,-410.561	1/2:40:0,19,21:0:0:19,21:684,731:-115.605,-59.7888,-54.0692,-56.1708,0,-49.8491	1/1:6:0,6,0:0:0:6,0:203,0:-18.6012,-1.80618,0,-18.6012,-1.80618,-18.6012	1/2:15:0,11,4:0:0:11,4:388,144:-43.6976,-12.1095,-8.79817,-31.946,0,-30.7419	1/2:4:0,3,1:0:0:3,1:99,36:-11.2784,-3.29724,-2.39415,-8.33349,0,-8.03246	1/1:3:0,2,0:0:0:2,0:72,0:-6.55679,-0.60206,0,-6.55679,-0.60206,-6.55679	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:180:0,93,86:0:0:93,86:3324,3071:-521.396,-250.37,-222.374,-271.023,0,-245.134	1/1:226:0,224,0:0:0:224,0:7969,0:-716.996,-67.4307,0,-716.996,-67.4307,-716.996	1/1:54:0,54,0:0:0:54,0:1919,0:-172.986,-16.2556,0,-172.986,-16.2556,-172.986	.:.:.:.:.:.:.:.	1/2:96:0,55,41:0:0:55,41:1947,1460:-277.946,-119.354,-102.797,-158.947,0,-146.605	1/1:30:0,30,0:0:0:30,0:1060,0:-95.7113,-9.0309,0,-95.7113,-9.0309,-95.7113	1/2:147:0,80,66:0:0:80,66:2820,2351:-421.381,-191.778,-167.696,-229.754,0,-209.886	1/2:51:0,28,22:0:0:28,22:995,784:-144.981,-63.9016,-55.4727,-81.0755,0,-74.4528	1/1:66:0,66,0:0:0:66,0:2341,0:-210.948,-19.868,0,-210.948,-19.868,-210.948	1/2:67:0,33,34:0:0:33,34:1188,1204:-195.368,-98.4308,-88.4968,-97.2946,0,-87.0596	1/2:147:0,77,70:0:0:77,70:2744,2473:-425.421,-201.752,-178.573,-224.024,0,-202.952	1/1:156:0,154,0:0:0:154,0:5500,0:-494.825,-46.3586,0,-494.825,-46.3586,-494.825	1/1:99:0,98,0:0:0:98,0:3485,0:-313.58,-29.5009,0,-313.58,-29.5009,-313.58	1/2:116:0,51,64:0:0:51,64:1828,2250:-332.23,-183.137,-167.784,-149.089,0,-129.823	1/1:97:1,95,0:1:30:95,0:3377,0:-301.19,-26.1543,0,-301.491,-28.5979,-303.889	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/1:100:0,100,0:0:0:100,0:3592,0:-323.486,-30.103,0,-323.486,-30.103,-323.486	1/2:4:0,1,3:0:0:1,3:36,104:-11.7405,-8.79971,-8.49868,-3.29724,0,-2.39415	1/2:19:0,11,8:0:0:11,8:396,284:-55.8096,-23.4951,-20.1838,-32.6714,0,-30.2632	1/1:139:0,138,0:0:0:138,0:4892,0:-440.052,-41.5421,0,-440.052,-41.5421,-440.052	1/2:21:0,17,4:0:0:17,4:586,144:-59.6974,-12.1095,-6.99199,-47.9449,0,-46.7407	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60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chr09	22375643	.	A	G	15452.4	PASS	AB=0.434629;ABP=87.0455;AC=48;AF=0.255319;AN=188;AO=999;CIGAR=1X;DP=5994;DPB=5994;DPRA=0.664186;EPP=2129.1;EPPR=10719.6;GTI=8;LEN=1;MEANALT=1;MQM=59.992;MQMR=59.9373;NS=94;NUMALT=1;ODDS=1.88566;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35756;QR=179293;RO=4995;RPL=994;RPP=2129.1;RPPR=10719.6;RPR=5;RUN=1;SAF=999;SAP=2172.31;SAR=0;SRF=4995;SRP=10849.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.205	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/0:26:25,1:25:900:1:36:0,-4.2285,-77.7227	0/0:23:21,2:21:752:2:72:0,-0.0869673,-61.1692	0/1:64:42,22:42:1504:22:784:-51.618,0,-116.389	0/1:72:59,13:59:2120:13:468:-20.7855,0,-169.394	0/1:62:37,25:37:1324:25:900:-62.6572,0,-100.798	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.473	0/0:49:49,0:49:1746:0:0:0,-14.7505,-157.423	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:53:25,28:25:900:28:1008:-75.0818,0,-65.3631	0/1:31:18,13:18:648:13:451:-31.5879,0,-49.32	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:123:122,1:122:4384:1:36:0,-33.4284,-391.133	0/0:135:135,0:135:4840:0:0:0,-40.639,-434.963	0/1:28:15,13:15:540:13:460:-33.3065,0,-40.5077	0/1:76:56,20:56:2016:20:720:-42.2505,0,-158.835	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.331	0/0:253:253,0:253:9070:0:0:0,-76.1606,-816.266	0/1:98:63,35:63:2259:35:1241:-82.4926,0,-174.066	0/1:21:12,9:12:428:9:324:-23.1842,0,-32.5372	0/0:159:158,1:158:5668:1:36:0,-44.2655,-506.64	0/0:130:130,0:130:4660:0:0:0,-39.1339,-418.661	0/1:66:35,31:35:1260:31:1112:-80.5234,0,-93.8375	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:9:6,3:6:212:3:100:-6.62059,0,-16.7155	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:122:58,64:58:2088:64:2267:-167.564,0,-151.464	0/0:81:79,2:79:2840:2:72:0,-17.5467,-248.995	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:104:70,34:70:2508:34:1212:-78.0792,0,-194.665	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:73:57,16:57:2052:16:572:-29.8382,0,-162.976	0/1:30:10,20:10:360:20:716:-55.7368,0,-23.7134	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:72:56,16:56:2016:16:572:-30.1393,0,-160.039	0/1:43:35,8:35:1260:8:288:-13.3231,0,-100.761	0/0:144:144,0:144:5160:0:0:0,-43.3483,-464.54	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/1:79:37,42:37:1332:42:1508:-112.233,0,-96.401	0/0:135:135,0:135:4852:0:0:0,-40.639,-436.831	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:89:89,0:89:3185:0:0:0,-26.7917,-285.683	0/1:51:28,23:28:1008:23:828:-59.4834,0,-75.6838	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/1:50:35,15:35:1260:15:540:-33.885,0,-98.654	0/0:64:63,1:63:2264:1:36:0,-15.6676,-200.418	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:359:147,212:147:5288:212:7590:-575.067,0,-367.954	0/0:158:158,0:158:5680:0:0:0,-47.5627,-511.316	0/1:42:16,26:16:561:26:932:-71.5556,0,-38.1739	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.1647	0/1:94:71,23:71:2548:23:828:-46.5473,0,-201.272	0/0:117:114,3:114:4065:3:108:0,-25.1453,-355.933	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:28:18,10:18:648:10:356:-23.9524,0,-50.223	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:20:6,14:6:216:14:500:-39.3156,0,-13.7699	0/0:115:115,0:115:4132:0:0:0,-34.6184,-371.506	0/1:102:43,59:43:1540:59:2120:-160.363,0,-108.188	0/0:123:123,0:123:4428:0:0:0,-37.0267,-398.689	0/0:173:173,0:173:6216:0:0:0,-52.0782,-559.529	0/1:36:32,4:32:1140:4:144:-2.47654,0,-92.0545	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.364	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:52:31,21:31:1104:21:756:-52.7137,0,-84.0171	0/1:44:27,17:27:968:17:612:-42.1681,0,-74.192	0/0:177:177,0:177:6356:0:0:0,-53.2823,-572.124	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:39:38,1:38:1368:1:36:0,-8.14189,-119.823	0/1:28:15,13:15:540:13:464:-33.6687,0,-40.5077	0/0:78:78,0:78:2787:0:0:0,-23.4803,-251.07	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:40:24,16:24:864:16:567:-39.3195,0,-66.0414	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.759	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:33:13,20:13:468:20:720:-55.1948,0,-32.5257	0/1:34:9,25:9:324:25:896:-70.7253,0,-19.2708	0/0:171:171,0:171:6140:0:0:0,-51.4761,-552.697	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068
chr09	22375653	.	A	T	15334.5	PASS	AB=0.438667;ABP=76.5277;AC=48;AF=0.255319;AN=188;AO=1002;CIGAR=1X;DP=5931;DPB=5931;DPRA=0.663948;EPP=2178.83;EPPR=10693.2;GTI=7;LEN=1;MEANALT=1.03636;MQM=59.992;MQMR=59.9415;NS=94;NUMALT=1;ODDS=1.71002;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35884;QR=176172;RO=4923;RPL=1002;RPP=2178.83;RPPR=10693.2;RPR=0;RUN=1;SAF=1002;SAP=2178.83;SAR=0;SRF=4923;SRP=10693.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:85:85,0:85:3060:0:0:0,-25.5875,-275.61	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/0:104:104,0:104:3713:0:0:0,-31.3071,-334.371	0/0:26:25,1:25:900:1:36:0,-4.2285,-77.7227	0/0:23:21,2:21:748:2:72:0,-0.0869673,-60.8077	0/1:63:40,23:40:1417:23:824:-55.5184,0,-108.86	0/1:73:59,14:59:2116:14:497:-23.0892,0,-168.734	0/1:63:37,26:37:1320:26:930:-65.0534,0,-100.137	0/0:98:96,0:96:3421:0:0:0,-28.8989,-307.743	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/0:49:48,0:48:1724:0:0:0,-14.4494,-155.086	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:52:25,27:25:896:27:968:-71.7838,0,-65.3034	0/1:31:18,13:18:648:13:460:-32.4034,0,-49.32	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	0/1:19:5,14:5:180:14:500:-39.6166,0,-10.8325	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:122:120,1:120:4300:1:36:0,-33.1762,-383.588	0/0:135:135,0:135:4848:0:0:0,-40.639,-435.682	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:76:56,20:56:2004:20:720:-42.2505,0,-157.755	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.892	0/0:252:252,0:252:9013:0:0:0,-75.8596,-811.144	0/1:99:64,35:64:2276:35:1260:-83.9035,0,-175.296	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	0/0:154:153,1:153:5484:1:36:0,-42.7603,-490.088	0/0:128:128,0:128:4580:0:0:0,-38.5318,-411.786	0/1:67:36,31:36:1296:31:1104:-79.5016,0,-96.7749	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:117:55,62:55:1964:62:2228:-165.563,0,-141.815	0/0:77:75,2:75:2661:2:72:0,-16.3426,-232.898	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:100:67,33:67:2404:33:1188:-77.1256,0,-186.513	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:73:56,17:56:2004:17:608:-33.0768,0,-158.658	0/1:30:10,20:10:356:20:716:-55.7368,0,-23.3503	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:74:57,17:57:2040:17:603:-32.3233,0,-161.596	0/1:42:33,8:33:1175:8:288:-13.5653,0,-93.355	0/0:143:142,0:142:5088:0:0:0,-42.7463,-457.813	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:78:36,42:36:1292:42:1508:-112.534,0,-93.1034	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.233	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:88:88,0:88:3130:0:0:0,-26.4906,-280.735	0/1:52:29,23:29:1040:23:809:-57.4715,0,-78.2608	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/1:21:15,6:15:536:6:216:-13.4689,0,-42.2532	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:51:34,17:34:1205:17:612:-40.0609,0,-93.4014	0/0:62:61,1:61:2196:1:36:0,-15.0656,-194.301	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:356:143,213:143:5128:213:7605:-577.321,0,-354.466	0/0:157:157,0:157:5596:0:0:0,-47.2617,-503.763	0/1:45:16,29:16:576:29:1040:-80.368,0,-38.6286	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5021	0/1:89:66,23:66:2360:23:828:-48.0524,0,-185.865	0/0:112:109,3:109:3889:3:108:0,-23.6402,-340.1	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:28:18,10:18:648:10:360:-24.3155,0,-50.223	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:19:5,14:5:180:14:500:-39.6166,0,-10.8325	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.31	0/1:101:43,58:43:1540:58:2088:-157.786,0,-108.489	0/0:126:126,0:126:4512:0:0:0,-37.9298,-406.248	0/0:172:172,0:172:6180:0:0:0,-51.7772,-556.29	0/1:35:31,4:31:1104:4:144:-2.77757,0,-89.1346	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.762	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:51:30,21:30:1068:21:756:-53.0147,0,-81.0795	0/1:44:28,16:28:1000:16:576:-38.9297,0,-77.0701	0/0:174:174,0:174:6195:0:0:0,-52.3792,-557.642	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/0:39:38,1:38:1355:1:36:0,-8.14189,-118.651	0/1:29:16,13:16:576:13:464:-33.3676,0,-43.4451	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:40:25,15:25:888:15:536:-36.5336,0,-68.1978	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.921	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:32:13,19:13:468:19:680:-51.8962,0,-32.8267	0/1:34:9,25:9:309:25:896:-70.7253,0,-17.9057	0/0:165:165,0:165:5936:0:0:0,-49.6699,-534.344	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02
chr09	22375664	.	TGAAA	CGAAT,TGAAT	126243	PASS	AB=0.555605,0.4391;ABP=63.8652,76.0086;AC=140,48;AF=0.744681,0.255319;AN=188;AO=4950,1012;CIGAR=1X3M1X,4M1X;DP=5989;DPB=5989.6;DPRA=21.4552,0.664371;EPP=10751.8,2106.03;EPPR=5.18177;GTI=7;LEN=5,1;MEANALT=1.84946,2.23636;MQM=59.9453,59.8518;MQMR=60;NS=94;NUMALT=2;ODDS=1.79442;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=91,0;PQR=0;PRO=0;QA=172306,36207;QR=27;RO=1;RPL=4950,1001;RPP=10751.8,2106.03;RPPR=5.18177;RPR=0,11;RUN=1,1;SAF=4950,1012;SAP=10751.8,2200.54;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,28,0:0:0:28,0:959,0:-86.3081,-8.42884,0,-86.3081,-8.42884,-86.3081	1/1:89:0,89,0:0:0:89,0:3122,0:-281.195,-26.7917,0,-281.195,-26.7917,-281.195	1/1:100:0,100,0:0:0:100,0:3478,0:-313.24,-30.103,0,-313.24,-30.103,-313.24	1/1:108:0,107,0:0:0:107,0:3724,0:-335.111,-32.2102,0,-335.111,-32.2102,-335.111	1/1:27:0,25,2:0:0:25,2:888,72:-79.8814,-7.52575,0,-74.0346,-1.32098,-73.4326	1/1:23:0,21,2:0:0:21,2:723,68:-65.0493,-6.32163,0,-59.5339,-0.465982,-58.9318	1/2:63:0,39,23:0:0:39,23:1336,824:-175.641,-67.1999,-55.4597,-108.434,0,-101.51	1/2:73:0,58,14:0:0:58,14:2015,500:-204.614,-40.8016,-23.3419,-163.847,0,-159.633	1/2:64:0,38,25:0:0:38,25:1320,887:-179.634,-72.3234,-60.8842,-107.407,0,-99.8815	1/1:97:0,97,0:0:0:97,0:3360,0:-302.625,-29.1999,0,-302.625,-29.1999,-302.625	1/2:16:0,5,11:0:0:5,11:174,392:-46.4547,-32.3087,-30.8036,-14.4965,0,-11.1851	1/1:55:0,54,0:0:0:54,0:1885,0:-169.669,-16.2556,0,-169.669,-16.2556,-169.669	1/1:48:0,48,0:0:0:48,0:1665,0:-150.136,-14.4494,0,-150.136,-14.4494,-150.136	1/1:24:0,24,0:0:0:24,0:851,0:-76.9105,-7.22472,0,-76.9105,-7.22472,-76.9105	1/2:53:0,25,28:0:0:25,28:871,1004:-153.073,-82.247,-74.7213,-71.1792,0,-62.7504	1/2:31:0,18,13:0:0:18,13:638,460:-89.7989,-37.822,-32.4034,-52.3308,0,-48.4174	1/2:15:0,9,6:0:0:9,6:318,207:-43.0643,-17.1607,-14.4514,-26.2517,0,-24.4455	1/2:19:0,5,14:0:0:5,14:174,500:-55.2678,-41.1218,-39.6166,-14.4963,0,-10.2819	1/1:15:0,15,0:0:0:15,0:532,0:-48.2136,-4.51545,0,-48.2136,-4.51545,-48.2136	1/1:125:0,123,2:0:0:123,2:4298,72:-386.647,-37.0267,0,-380.772,-30.792,-380.17	1/1:136:0,136,0:0:0:136,0:4672,0:-420.657,-40.9401,0,-420.657,-40.9401,-420.657	1/2:29:0,15,14:0:0:15,14:527,504:-84.3733,-41.4837,-36.9682,-43.2453,0,-39.0308	1/2:73:0,55,18:0:0:55,18:1940,644:-210.836,-52.8721,-36.3154,-158.32,0,-152.902	1/1:84:0,83,0:0:0:83,0:2898,0:-260.702,-24.9855,0,-260.702,-24.9855,-260.702	1/1:57:0,57,0:0:0:57,0:1970,0:-177.553,-17.1587,0,-177.553,-17.1587,-177.553	1/1:253:0,253,0:0:0:253,0:8799,0:-791.928,-76.1606,0,-791.928,-76.1606,-791.928	1/2:99:0,63,36:0:0:63,36:2186,1265:-281.006,-103.313,-84.3486,-178.042,0,-167.205	1/2:21:0,12,9:0:0:12,9:403,320:-59.0665,-26.4331,-22.8207,-32.9803,0,-30.2711	1/1:159:0,157,1:0:0:157,1:5449,36:-490.227,-47.2617,0,-487.289,-44.2944,-486.988	1/1:131:0,131,0:0:0:131,0:4504,0:-405.468,-39.4349,0,-405.468,-39.4349,-405.468	1/2:65:0,34,31:0:0:34,31:1176,1116:-186.654,-91.0986,-80.8636,-95.5872,0,-86.2552	1/1:3:0,3,0:0:0:3,0:107,0:-9.98217,-0.90309,0,-9.98217,-0.90309,-9.98217	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:10:0,7,3:0:0:7,3:238,108:-28.4634,-9.17208,-7.06487,-19.6451,0,-18.742	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:133,0:-12.2985,-1.20412,0,-12.2985,-1.20412,-12.2985	1/2:120:0,56,64:0:0:56,64:1962,2295:-347.189,-187.544,-170.687,-159.999,0,-140.733	1/1:78:0,76,2:0:0:76,2:2647,72:-238.113,-22.8783,0,-232.238,-16.6436,-231.636	1/1:11:0,11,0:0:0:11,0:374,0:-33.9867,-3.31133,0,-33.9867,-3.31133,-33.9867	1/2:4:0,2,2:0:0:2,2:63,72:-11.2784,-6.23466,-5.6326,-5.38109,0,-4.77903	1/2:98:0,66,32:0:0:66,32:2278,1148:-279.059,-93.9969,-74.1289,-185.416,0,-175.783	1/1:6:0,6,0:0:0:6,0:213,0:-19.5164,-1.80618,0,-19.5164,-1.80618,-19.5164	1/2:74:0,57,17:0:0:57,17:1988,612:-211.975,-50.2959,-33.1372,-162.036,0,-156.919	1/2:29:0,9,20:0:0:9,20:320,716:-84.8244,-58.7471,-56.0378,-26.4334,0,-20.4128	1/1:33:0,33,0:0:0:33,0:1137,0:-102.633,-9.93399,0,-102.633,-9.93399,-102.633	1/2:73:0,56,17:0:0:56,17:1958,612:-209.578,-50.2959,-33.4382,-159.639,0,-154.522	1/2:43:0,34,8:0:0:34,8:1194,288:-120.74,-23.5614,-13.3264,-97.2387,0,-94.8305	1/1:145:0,144,0:0:0:144,0:5020,0:-451.601,-43.3483,0,-451.601,-43.3483,-451.601	1/1:79:0,78,0:0:0:78,0:2724,0:-245.065,-23.4803,0,-245.065,-23.4803,-245.065	1/2:79:0,37,42:0:0:37,42:1281,1504:-227.11,-123.011,-111.873,-104.451,0,-91.8073	1/1:134:0,132,0:0:0:132,0:4640,0:-417.462,-39.736,0,-417.462,-39.736,-417.462	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:89:0,89,0:0:0:89,0:3130,0:-281.44,-26.7917,0,-281.44,-26.7917,-281.44	1/2:52:0,28,22:0:0:28,22:986,784:-144.258,-63.9841,-55.5553,-80.3487,0,-73.726	1/2:5:0,4,1:0:0:4,1:139,36:-14.588,-3.29724,-2.09312,-11.6481,0,-11.3471	1/1:75:0,75,0:0:0:75,0:2590,0:-233.35,-22.5773,0,-233.35,-22.5773,-233.35	1/2:20:0,14,6:0:0:14,6:483,216:-57.2122,-17.9843,-13.7699,-39.5832,0,-37.7771	1/1:1:0,1,0:0:0:1,0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chr09	22375674	.	T	A	104667	PASS	AB=0.558255;ABP=68.5364;AC=140;AF=0.744681;AN=188;AO=4860;CIGAR=1X;DP=5860;DPB=5860;DPRA=20.9928;EPP=10556.4;EPPR=2077.82;GTI=6;LEN=1;MEANALT=1.01075;MQM=59.9444;MQMR=59.8418;NS=94;NUMALT=1;ODDS=1.32894;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173843;QR=35570;RO=999;RPL=4860;RPP=10556.4;RPPR=2077.82;RPR=0;RUN=1;SAF=4860;SAP=10556.4;SAR=0;SRF=999;SRP=2172.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:86:0,86:0:0:86:3068:-276.332,-25.8886,0	1/1:96:0,96:0:0:96:3432:-309.094,-28.8989,0	1/1:105:0,105:0:0:105:3763:-338.868,-31.6082,0	1/1:27:2,24:2:72:24:860:-70.9145,-1.37925,0	1/1:23:2,21:2:72:21:752:-61.1686,-0.0869676,0	0/1:63:23,40:23:793:40:1424:-109.493,0,-52.72	0/1:72:14,58:14:504:58:2072:-165.077,0,-24.0239	0/1:62:26,36:26:932:36:1280:-96.8394,0,-65.49	1/1:95:0,95:0:0:95:3400:-306.215,-28.5979,0	0/1:16:11,5:11:392:5:180:-11.7356,0,-30.8036	1/1:55:0,55:0:0:55:1976:-178.113,-16.5567,0	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:52:27,25:27:959:25:900:-65.6641,0,-70.9718	0/1:30:12,18:12:417:18:648:-49.621,0,-28.8293	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2796	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:122:1,121:1:36:121:4348:-387.895,-33.1274,0	1/1:130:0,130:0:0:130:4643:-418.033,-39.1339,0	0/1:29:14,15:14:504:15:521:-38.4865,0,-36.9682	0/1:73:18,55:18:644:55:1959:-154.61,0,-36.3154	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	1/1:55:0,55:0:0:55:1976:-178.092,-16.5567,0	1/1:244:0,244:0:0:244:8716:-784.429,-73.4513,0	0/1:97:34,63:34:1203:63:2252:-173.739,0,-79.3751	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	1/1:157:1,156:1:36:156:5587:-499.354,-43.6634,0	1/1:127:0,127:0:0:127:4548:-408.885,-38.2308,0	0/1:62:29,33:29:1040:33:1184:-88.2045,0,-75.2505	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:118:62,56:62:2205:56:2000:-144.752,0,-163.192	1/1:77:3,74:3:104:74:2640:-228.138,-13.4765,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:97:34,63:34:1196:63:2255:-174.012,0,-78.7427	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:73:17,56:17:608:56:2012:-159.378,0,-33.0768	0/1:27:18,9:18:644:9:324:-21.378,0,-50.1628	1/1:33:0,33:0:0:33:1167:-105.336,-9.93399,0	0/1:71:15,56:15:527:56:2008:-159.62,0,-26.3871	0/1:43:8,35:8:288:35:1256:-100.401,0,-13.3231	1/1:145:0,145:0:0:145:5208:-468.857,-43.6494,0	1/1:78:0,78:0:0:78:2780:-250.439,-23.4803,0	0/1:79:43,36:43:1531:36:1288:-92.4422,0,-114.301	1/1:132:0,132:0:0:132:4736:-426.397,-39.736,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:88:0,88:0:0:88:3152:-282.716,-26.4906,0	0/1:52:23,29:23:824:29:1036:-77.9004,0,-58.8216	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:72:0,72:0:0:72:2563:-230.92,-21.6742,0	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:53:20,33:20:716:33:1188:-91.274,0,-48.7277	1/1:62:1,61:1:36:61:2188:-193.585,-15.0656,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:350:212,138:212:7532:138:4940:-339.361,0,-572.558	1/1:153:0,153:0:0:153:5464:-491.89,-46.0576,0	0/1:44:28,16:28:996:16:576:-38.9297,0,-76.7096	0/1:24:8,16:8:288:16:572:-44.5021,0,-19.0427	0/1:91:22,69:22:780:69:2467:-194.888,0,-43.1293	1/1:110:3,107:3:108:107:3840:-335.692,-23.0381,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:28:10,18:10:352:18:628:-48.4166,0,-23.5894	1/1:27:0,27:0:0:27:963:-86.9859,-8.12781,0	0/1:20:14,6:14:500:6:212:-13.4042,0,-39.3156	1/1:114:0,114:0:0:114:4080:-366.83,-34.3174,0	0/1:103:60,43:60:2136:43:1544:-108.247,0,-161.412	1/1:124:0,124:0:0:124:4417:-397.703,-37.3277,0	1/1:168:0,168:0:0:168:6007:-540.731,-50.573,0	0/1:39:7,32:7:252:32:1144:-91.5117,0,-11.1523	1/1:100:0,100:0:0:100:3584:-322.766,-30.103,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:51:21,30:21:747:30:1063:-80.6283,0,-52.2018	0/1:44:17,27:17:604:27:964:-73.8315,0,-41.4453	1/1:171:0,171:0:0:171:6098:-548.919,-51.4761,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	1/1:38:1,37:1:36:37:1328:-116.224,-7.84087,0	0/1:27:12,15:12:432:15:528:-39.7236,0,-31.0934	1/1:78:0,78:0:0:78:2791:-251.43,-23.4803,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:38:15,23:15:540:23:824:-63.0442,0,-37.4974	1/1:40:0,40:0:0:40:1424:-128.45,-12.0412,0	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:29:18,11:18:644:11:392:-26.8902,0,-49.5607	0/1:31:23,8:23:824:8:288:-16.9355,0,-65.1514	1/1:165:0,165:0:0:165:5907:-531.739,-49.67,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0
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chr09	22382072	.	G	T	41159	PASS	AB=0.551923;ABP=104.71;AC=50;AF=0.268817;AN=186;AO=2414;CIGAR=1X;DP=8984;DPB=8984;DPRA=0.930675;EPP=5244.94;EPPR=14254.4;GTI=1;LEN=1;MEANALT=1.05263;MQM=54.5849;MQMR=59.9651;NS=93;NUMALT=1;ODDS=2.93623;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85752;QR=229947;RO=6567;RPL=0;RPP=5244.94;RPPR=14263.1;RPR=2414;RUN=1;SAF=0;SAP=5244.94;SAR=2414;SRF=1;SRP=14254.4;SRR=6566;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:35,1:35:1239:1:36:0,-7.24785,-108.224	0/0:103:103,0:103:3613:0:0:0,-31.0061,-325.372	0/0:101:101,0:101:3558:0:0:0,-30.404,-320.429	0/0:170:170,0:170:5988:0:0:0,-51.1751,-539.028	0/1:74:16,58:16:560:58:2041:-161.028,0,-28.4443	0/1:68:22,46:22:777:46:1641:-126.381,0,-49.7794	0/1:117:56,61:56:1979:61:2156:-158.876,0,-143.161	0/1:106:45,61:45:1572:61:2188:-164.338,0,-109.858	0/1:117:61,56:61:2096:56:1988:-143.091,0,-153.681	0/0:90:90,0:90:3178:0:0:0,-27.0927,-286.243	0/1:20:11,9:11:384:9:320:-23.0892,0,-28.8741	0/0:83:83,0:83:2895:0:0:0,-24.9855,-260.785	0/0:70:70,0:70:2487:0:0:0,-21.0721,-224.083	0/0:54:54,0:54:1847:0:0:0,-16.2556,-166.485	0/1:78:46,32:46:1613:32:1140:-79.314,0,-121.975	0/1:61:41,20:41:1443:20:708:-45.1077,0,-111.801	0/1:70:40,30:40:1390:30:1048:-73.2249,0,-104.32	0/1:58:30,28:30:1034:28:1000:-72.6447,0,-75.9049	0/0:28:28,0:28:990:0:0:0,-8.42884,-89.4127	0/0:128:128,0:128:4502:0:0:0,-38.5318,-405.35	0/0:106:104,2:104:3628:2:72:0,-25.0822,-319.899	0/1:142:45,97:45:1580:97:3437:-266.13,0,-99.7412	0/1:121:63,58:63:2248:58:2063:-149.092,0,-166.159	0/0:135:135,0:135:4688:0:0:0,-40.639,-422.086	0/0:63:63,0:63:2235:0:0:0,-18.9649,-201.414	0/0:287:287,0:287:10074:0:0:0,-86.3956,-906.61	0/1:202:78,124:78:2726:124:4407:-334.729,0,-184.772	0/1:36:16,20:16:555:20:720:-54.1993,0,-39.439	0/0:223:223,0:223:7877:0:0:0,-67.1297,-708.964	0/0:143:142,1:142:4935:1:32:0,-39.85,-441.107	0/1:130:56,74:56:1954:74:2617:-196.304,0,-136.998	0/0:4:4,0:4:125:0:0:0,-1.20412,-11.5586	0/1:6:3,3:3:108:3:108:-8.2547,0,-8.26899	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:3:1,2:1:36:2:72:-5.91057,0,-2.69518	0/1:215:103,112:103:3623:112:3992:-294.428,0,-261.186	0/0:207:207,0:207:7278:0:0:0,-62.3132,-655.077	0/0:59:59,0:59:2059:0:0:0,-17.7608,-185.579	.:.:.:.:.:.:.:.	0/1:160:64,96:64:2270:96:3427:-259.919,0,-156.397	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/1:152:51,101:51:1811:101:3592:-276.769,0,-117.514	0/1:105:42,62:42:1467:62:2205:-166.823,0,-100.696	0/0:89:89,0:89:3086:0:0:0,-26.7917,-277.969	0/1:120:53,67:53:1861:67:2396:-179.602,0,-131.644	0/1:131:69,62:69:2410:62:2215:-159.185,0,-177.718	0/0:234:228,6:228:7981:6:208:0,-51.3895,-699.224	0/0:128:128,0:128:4484:0:0:0,-38.5318,-403.725	0/1:133:59,74:59:2076:74:2607:-194.621,0,-147.071	0/0:137:136,1:136:4755:1:32:0,-38.042,-424.91	0/1:7:4,3:4:140:3:104:-7.59177,0,-10.8374	0/0:116:116,0:116:4096:0:0:0,-34.9195,-368.826	0/1:40:14,26:14:504:26:932:-72.1488,0,-33.6569	0/1:14:7,7:7:248:7:252:-18.7566,0,-18.4498	0/0:79:78,1:78:2650:1:36:0,-20.1882,-235.147	0/1:45:18,27:18:633:27:954:-72.5577,0,-43.7487	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:18:9,9:9:311:9:324:-24.0837,0,-22.9052	0/1:88:45,43:45:1557:43:1523:-110.498,0,-113.925	0/0:97:97,0:97:3382:0:0:0,-29.1999,-304.599	0/1:9:3,6:3:108:6:216:-16.9837,0,-7.3659	0/1:338:176,162:176:6191:162:5773:-417.471,0,-455.545	0/0:191:189,2:189:6640:2:72:0,-50.6633,-590.851	0/1:94:42,52:42:1493:52:1842:-137.202,0,-106.366	0/1:73:32,41:32:1132:41:1443:-107.791,0,-80.1063	0/1:200:82,117:82:2861:117:4146:-312.466,0,-197.461	0/0:89:89,0:89:3125:0:0:0,-26.7917,-281.476	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7375	0/1:68:29,39:29:1004:39:1384:-103.986,0,-70.1976	0/0:75:75,0:75:2623:0:0:0,-22.5772,-236.288	0/1:18:5,13:5:167:13:451:-35.4407,0,-9.93987	0/0:108:108,0:108:3760:0:0:0,-32.5112,-338.598	0/1:84:42,42:42:1458:42:1495:-109.136,0,-106.223	0/0:134:134,0:134:4686:0:0:0,-40.338,-421.904	0/0:141:141,0:141:4949:0:0:0,-42.4452,-445.561	0/1:159:59,100:59:2026:100:3562:-271.75,0,-134.741	0/0:81:80,1:80:2829:1:36:0,-20.7942,-251.26	0/1:18:8,10:8:279:10:351:-26.433,0,-20.0256	0/1:158:79,79:79:2758:79:2820:-205.316,0,-200.895	0/1:107:37,70:37:1294:70:2489:-191.017,0,-84.546	0/0:160:160,0:160:5617:0:0:0,-48.1648,-505.655	0/0:119:119,0:119:4194:0:0:0,-35.8226,-377.644	0/0:61:61,0:61:2118:0:0:0,-18.3628,-190.886	0/1:100:46,53:46:1604:53:1888:-139.284,0,-114.485	0/0:164:164,0:164:5673:0:0:0,-49.3689,-510.702	0/1:52:30,22:30:1035:22:771:-53.8963,0,-77.8017	0/1:85:46,39:46:1588:39:1370:-97.361,0,-117.608	0/0:78:78,0:78:2723:0:0:0,-23.4803,-245.314	0/1:20:9,11:9:316:11:392:-29.5512,0,-22.7583	0/1:57:29,28:29:984:28:1000:-72.3401,0,-71.7065	0/1:66:21,45:21:729:45:1586:-122.54,0,-46.0607	0/0:120:120,0:120:4208:0:0:0,-36.1236,-378.902	0/0:102:102,0:102:3563:0:0:0,-30.7051,-320.88
chr09	22382081	.	G	A	40656.4	PASS	AB=0.547096;ABP=86.2554;AC=50;AF=0.268817;AN=186;AO=2381;CIGAR=1X;DP=8979;DPB=8979;DPRA=0.925091;EPP=5173.29;EPPR=14282.6;GTI=1;LEN=1;MEANALT=1.01754;MQM=54.6107;MQMR=59.944;NS=93;NUMALT=1;ODDS=3.76587;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84752;QR=233146;RO=6592;RPL=0;RPP=5173.29;RPPR=14291.3;RPR=2381;RUN=1;SAF=0;SAP=5173.29;SAR=2381;SRF=1;SRP=14308.7;SRR=6591;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:36,1:36:1254:1:36:0,-7.54888,-109.569	0/0:105:105,0:105:3717:0:0:0,-31.6081,-334.731	0/0:99:99,0:99:3515:0:0:0,-29.802,-316.559	0/0:167:167,0:167:5972:0:0:0,-50.272,-537.585	0/1:72:16,56:16:557:56:1996:-157.471,0,-28.7814	0/1:65:21,44:21:748:44:1576:-121.608,0,-48.0774	0/1:113:55,58:55:1946:58:2076:-152.96,0,-141.398	0/1:104:44,60:44:1557:60:2135:-160.295,0,-109.112	0/1:114:62,52:62:2194:52:1843:-131.037,0,-163.407	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/1:20:11,9:11:381:9:320:-23.0892,0,-28.6	0/0:83:83,0:83:2930:0:0:0,-24.9855,-263.936	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:51:51,0:51:1804:0:0:0,-15.3525,-162.322	0/1:77:46,31:46:1634:31:1103:-76.2866,0,-124.167	0/1:61:42,19:42:1481:19:661:-41.2156,0,-115.218	0/1:69:39,30:39:1396:30:1057:-74.2493,0,-105.165	0/1:58:30,28:30:1048:28:1008:-73.3559,0,-77.1676	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.2091	0/0:127:127,0:127:4511:0:0:0,-38.2308,-406.159	0/0:106:104,2:104:3697:2:72:0,-25.0822,-326.103	0/1:136:44,92:44:1575:92:3282:-254.248,0,-101.101	0/1:118:63,55:63:2252:55:1976:-142.145,0,-167.422	0/0:138:138,0:138:4860:0:0:0,-41.5421,-437.554	0/0:63:63,0:63:2233:0:0:0,-18.9649,-201.233	0/0:291:290,0:290:10230:0:0:0,-87.2987,-920.279	0/1:198:78,120:78:2787:120:4235:-320.591,0,-191.466	0/1:36:16,20:16:554:20:720:-54.1993,0,-39.3478	0/0:226:226,0:226:7984:0:0:0,-68.0328,-718.585	0/0:144:143,1:143:5046:1:36:0,-39.7551,-450.694	0/1:129:56,73:56:1987:73:2599:-194.935,0,-140.271	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:3,3:3:108:3:108:-8.2547,0,-8.26899	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:3:1,2:1:36:2:72:-5.91057,0,-2.69518	0/1:209:100,109:100:3542:109:3877:-285.714,0,-256.073	0/0:211:211,0:211:7422:0:0:0,-63.5173,-668.003	0/0:59:59,0:59:2071:0:0:0,-17.7608,-186.656	.:.:.:.:.:.:.:.	0/1:161:66,95:66:2355:95:3391:-256.298,0,-163.743	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:153:53,100:53:1880:100:3600:-277.243,0,-123.349	0/1:106:44,62:44:1571:62:2213:-167.29,0,-109.772	0/0:86:85,0:85:2912:0:0:0,-25.5875,-262.105	0/1:118:53,65:53:1883:65:2317:-173.149,0,-134.226	0/1:130:69,61:69:2427:61:2184:-156.545,0,-179.55	0/0:236:230,5:230:8142:5:180:0,-54.5576,-716.21	0/0:126:126,0:126:4454:0:0:0,-37.9298,-401.033	0/1:139:63,76:63:2218:76:2701:-201.259,0,-158.038	0/0:137:136,1:136:4842:1:36:0,-37.6433,-432.338	0/1:6:4,2:4:144:2:72:-5.02729,0,-11.5074	0/0:112:111,0:111:3942:0:0:0,-33.4143,-354.611	0/1:39:14,25:14:476:25:887:-68.3993,0,-31.4217	0/1:14:7,7:7:252:7:252:-18.7566,0,-18.8145	0/0:80:79,1:79:2747:1:36:0,-20.4892,-243.876	0/1:44:18,26:18:625:26:923:-70.0863,0,-43.3272	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:18:9,9:9:311:9:324:-24.0837,0,-22.9052	0/1:87:44,43:44:1554:43:1540:-112.316,0,-113.961	0/0:97:97,0:97:3431:0:0:0,-29.1999,-309.004	0/1:9:3,6:3:108:6:215:-16.9013,0,-7.3659	0/1:343:180,163:180:6357:163:5835:-421.607,0,-468.974	0/0:191:189,2:189:6689:2:72:0,-50.6633,-595.211	0/1:92:40,52:40:1432:52:1868:-140.098,0,-101.483	0/1:72:32,40:32:1100:40:1414:-105.581,0,-77.6168	0/1:197:81,116:81:2900:116:4126:-311.654,0,-201.933	0/0:86:86,0:86:3060:0:0:0,-25.8886,-275.258	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:67:28,39:28:972:39:1400:-105.709,0,-67.6202	0/0:78:78,0:78:2718:0:0:0,-23.4803,-244.791	0/1:20:6,14:6:216:14:500:-39.2512,0,-13.7699	0/0:103:102,0:102:3580:0:0:0,-30.7051,-321.943	0/1:85:42,43:42:1467:43:1520:-111.071,0,-106.733	0/0:136:135,0:135:4788:0:0:0,-40.639,-430.719	0/0:140:140,0:140:5007:0:0:0,-42.1442,-450.777	0/1:161:61,100:61:2141:100:3523:-267.891,0,-144.382	0/0:81:80,1:80:2840:1:36:0,-20.7942,-252.248	0/1:18:8,10:8:288:10:356:-26.8853,0,-20.8455	0/1:163:83,80:83:2937:80:2858:-207.21,0,-215.496	0/1:107:37,70:37:1300:70:2475:-189.9,0,-85.0883	0/0:163:163,0:163:5798:0:0:0,-49.0679,-521.865	0/0:125:125,0:125:4470:0:0:0,-37.6287,-401.28	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/1:102:46,56:46:1630:56:1974:-146.774,0,-116.282	0/0:165:165,0:165:5825:0:0:0,-49.6699,-524.366	0/1:54:32,22:32:1074:22:779:-54.0062,0,-80.7014	0/1:84:46,38:46:1601:38:1328:-93.7927,0,-119.091	0/0:77:77,0:77:2692:0:0:0,-23.1793,-242.526	0/1:21:10,11:10:351:11:392:-29.2502,0,-25.605	0/1:57:30,27:30:1072:27:940:-67.5891,0,-79.6337	0/1:66:21,45:21:756:45:1589:-123.229,0,-48.4992	0/0:126:126,0:126:4447:0:0:0,-37.9298,-400.401	0/0:101:101,0:101:3552:0:0:0,-30.404,-319.332
chr09	22474013	.	C	T	57739.7	PASS	AB=0.507933;ABP=5.6977;AC=49;AF=0.260638;AN=188;AO=2517;CIGAR=1X;DP=11105;DPB=11105;DPRA=0.926294;EPP=26.4979;EPPR=188.369;GTI=2;LEN=1;MEANALT=1.04615;MQM=58.6484;MQMR=59.9313;NS=94;NUMALT=1;ODDS=1.90997;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90293;QR=306341;RO=8584;RPL=10;RPP=5382.09;RPPR=18400.5;RPR=2507;RUN=1;SAF=1186;SAP=21.149;SAR=1331;SRF=3892;SRP=164.909;SRR=4692;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.664	0/0:146:145,1:145:5191:1:36:0,-40.3547,-463.728	0/0:155:154,0:154:5504:0:0:0,-46.3586,-495.125	0/0:232:232,0:232:8324:0:0:0,-69.839,-749.158	0/1:99:51,48:51:1795:48:1728:-125.832,0,-132.026	0/1:41:25,16:25:891:16:576:-39.8009,0,-68.1665	0/1:114:47,67:47:1688:67:2403:-182.139,0,-117.886	0/1:137:74,63:74:2652:63:2264:-162.721,0,-197.683	0/1:156:67,89:67:2396:89:3192:-240.259,0,-168.929	0/0:113:113,0:113:4029:0:0:0,-34.0164,-362.798	0/1:98:43,55:43:1516:55:1972:-148.192,0,-107.221	0/0:225:224,1:224:7969:1:36:0,-64.1335,-713.624	0/0:177:177,0:177:6327:0:0:0,-53.2823,-569.515	0/0:161:160,1:160:5734:1:36:0,-44.8676,-512.574	0/1:171:81,90:81:2881:90:3240:-240.338,0,-208.05	0/1:137:53,84:53:1904:84:3016:-230.289,0,-130.394	0/1:124:65,59:65:2294:59:2111:-152.641,0,-169.393	0/1:114:53,61:53:1864:61:2183:-162.062,0,-133.719	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.441	0/0:186:186,0:186:6654:0:0:0,-55.9916,-598.92	0/0:186:186,0:186:6602:0:0:0,-55.9916,-594.261	0/1:39:11,28:11:396:28:1008:-79.2616,0,-24.2426	0/1:89:52,37:52:1856:37:1332:-93.3898,0,-140.528	0/0:82:82,0:82:2923:0:0:0,-24.6845,-263.113	0/0:133:131,1:131:4675:1:36:0,-36.4975,-417.242	0/0:230:228,2:228:8128:2:72:0,-62.4002,-724.174	0/1:267:145,122:145:5172:122:4384:-314.14,0,-385.24	0/1:82:44,38:44:1580:38:1368:-98.6962,0,-117.807	0/0:214:214,0:214:7654:0:0:0,-64.4204,-688.895	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/1:117:63,54:63:2244:54:1936:-139.253,0,-167.002	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:15:10,5:10:356:5:180:-12.0342,0,-27.8658	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:344:167,177:167:5966:177:6345:-467.521,0,-433.463	0/0:113:113,0:113:4002:0:0:0,-34.0164,-360.369	0/0:96:96,0:96:3427:0:0:0,-28.8989,-308.644	0/1:4:2,2:2:72:2:72:-5.63069,0,-5.6326	0/1:127:51,76:51:1808:76:2732:-207.699,0,-124.768	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726	0/1:133:64,69:64:2279:69:2453:-180.946,0,-165.333	0/1:191:94,97:94:3359:97:3492:-256.866,0,-245.03	0/0:129:129,0:129:4549:0:0:0,-38.8329,-409.577	0/1:70:37,33:37:1324:33:1184:-85.7834,0,-98.39	0/1:127:63,64:63:2268:64:2296:-168.36,0,-165.768	0/0:145:143,1:143:5102:1:36:0,-40.1099,-455.496	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:123:60,63:60:2135:63:2268:-167.283,0,-155.391	0/0:111:110,1:110:3943:1:36:0,-29.8161,-351.456	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:143:142,1:142:5062:1:36:0,-39.4516,-452.128	0/1:23:16,7:16:561:7:239:-14.8903,0,-43.8934	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	0/0:148:148,0:148:5275:0:0:0,-44.5524,-474.882	0/1:43:23,20:23:824:20:720:-52.1348,0,-61.539	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:65:33,32:33:1171:32:1148:-84.0363,0,-86.1297	0/0:224:224,0:224:8011:0:0:0,-67.4307,-721.011	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:141:78,62:78:2789:62:2215:-156.409,0,-207.796	0/0:152:152,0:152:5419:0:0:0,-45.7566,-487.842	0/1:127:81,46:81:2876:46:1656:-111.052,0,-220.819	0/1:79:39,40:39:1395:40:1421:-104.12,0,-102.067	0/1:122:63,59:63:2251:59:2116:-153.983,0,-166.127	0/0:100:98,2:98:3508:2:72:0,-23.2663,-309.094	0/0:87:85,2:85:3039:2:72:0,-19.3548,-266.904	0/1:95:45,50:45:1616:50:1800:-133.535,0,-117.13	0/0:158:157,1:157:5607:1:36:0,-43.9645,-501.155	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:83:83,0:83:2958:0:0:0,-24.9855,-266.45	0/1:67:31,36:31:1100:36:1292:-95.5956,0,-79.1413	0/0:165:164,1:164:5822:1:36:0,-46.0727,-520.499	0/0:168:168,0:168:5992:0:0:0,-50.573,-539.386	0/1:98:48,50:48:1707:50:1780:-130.91,0,-124.414	0/0:140:139,1:139:4988:1:36:0,-38.5485,-445.459	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:116:43,73:43:1531:73:2604:-199.542,0,-103.163	0/1:112:53,59:53:1904:59:2112:-156.554,0,-137.922	0/0:185:184,1:184:6577:1:36:0,-52.0923,-588.412	0/0:161:160,1:160:5719:1:36:0,-44.8676,-511.223	0/0:172:172,0:172:6111:0:0:0,-51.7772,-550.093	0/1:192:101,91:101:3592:91:3272:-236.86,0,-265.688	0/0:289:287,2:287:10228:2:72:0,-80.1609,-913.614	0/1:68:41,27:41:1464:27:972:-67.2789,0,-111.586	0/1:169:75,94:75:2688:94:3371:-252.278,0,-191.289	0/0:172:172,0:172:6164:0:0:0,-51.7772,-554.828	0/1:99:58,41:58:2050:41:1472:-102.697,0,-154.966	0/1:166:81,85:81:2904:85:3048:-224.497,0,-211.552	0/1:148:49,99:49:1744:99:3556:-275.687,0,-112.647	0/0:135:135,0:135:4802:0:0:0,-40.639,-432.338	0/0:258:258,0:258:9218:0:0:0,-77.6657,-829.547
chr09	22474315	.	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chr09	22474328	.	T	C	303133	PASS	AB=0.509854;ABP=8.65911;AC=138;AF=0.734043;AN=188;AO=11350;CIGAR=1X;DP=14675;DPB=14675;DPRA=0;EPP=24649.2;EPPR=7201.44;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.9678;MQMR=59.9042;NS=94;NUMALT=1;ODDS=3.44013;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=400587;QR=117545;RO=3319;RPL=6534;RPP=567.693;RPPR=201.643;RPR=4816;RUN=1;SAF=6534;SAP=567.693;SAR=4816;SRF=1934;SRP=200.203;SRR=1385;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:131:0,131:0:0:131:4633:-417.137,-39.4349,0	1/1:148:0,148:0:0:148:5222:-469.928,-44.5524,0	1/1:239:0,239:0:0:239:8406:-756.537,-71.9462,0	1/1:247:0,247:0:0:247:8717:-784.511,-74.3544,0	0/1:66:31,35:31:1112:35:1244:-92.3967,0,-80.5234	0/1:73:36,37:36:1284:37:1314:-96.5857,0,-93.8882	0/1:167:99,68:99:3469:68:2408:-166.703,0,-262.148	0/1:209:95,114:95:3381:114:4018:-298.891,0,-241.572	0/1:212:95,117:95:3346:117:4122:-307.348,0,-237.539	1/1:216:1,213:1:36:213:7541:-675.134,-61.182,0	0/1:165:72,93:72:2541:93:3283:-246.02,0,-179.271	1/1:213:0,213:0:0:213:7483:-673.508,-64.1194,0	1/1:209:0,209:0:0:209:7343:-660.929,-62.9153,0	1/1:185:0,185:0:0:185:6525:-587.33,-55.6906,0	0/1:160:96,64:96:3375:64:2262:-155.677,0,-255.806	0/1:180:81,99:81:2859:99:3461:-257.475,0,-202.587	0/1:116:60,56:60:2104:56:1994:-144.815,0,-154.706	0/1:108:53,55:53:1864:55:1916:-140.203,0,-135.526	1/1:124:1,123:1:36:123:4332:-386.46,-33.7294,0	1/1:243:1,242:1:36:242:8568:-767.524,-69.552,0	1/1:326:0,326:0:0:326:11463:-1031.56,-98.1358,0	0/1:98:63,35:63:2224:35:1230:-81.5015,0,-170.922	0/1:239:110,129:110:3914:129:4551:-337.812,0,-280.506	1/1:160:0,160:0:0:160:5663:-509.792,-48.1648,0	1/1:164:0,164:0:0:164:5868:-528.231,-49.3689,0	1/1:323:1,322:1:36:322:11382:-1020.67,-93.6344,0	0/1:374:172,202:172:6140:202:7187:-534.303,0,-440.107	0/1:91:49,42:49:1709:42:1500:-107.901,0,-126.697	1/1:298:2,296:2:72:296:10475:-935.839,-82.8702,0	1/1:121:0,121:0:0:121:4284:-385.74,-36.4246,0	0/1:273:129,144:129:4581:144:5155:-381.909,0,-330.273	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:18:11,7:11:387:7:243:-16.7889,0,-29.7381	0/1:6:5,1:5:171:1:36:-1.79209,0,-13.9193	1/1:19:0,19:0:0:19:657:-59.3933,-5.71957,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:423:193,230:193:6866:230:8056:-597.736,0,-490.677	1/1:135:0,135:0:0:135:4714:-424.419,-40.6391,0	1/1:128:0,128:0:0:128:4517:-406.7,-38.5318,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:148:82,66:82:2923:66:2323:-164.776,0,-218.748	1/1:87:0,87:0:0:87:3085:-277.878,-26.1896,0	0/1:191:90,101:90:3204:101:3555:-262.662,0,-231.085	0/1:196:92,104:92:3267:104:3640:-268.808,0,-235.222	1/1:182:1,181:1:36:181:6384:-571.057,-51.1892,0	0/1:145:72,73:72:2564:73:2571:-187.989,0,-187.361	0/1:137:50,87:50:1784:87:3059:-234.293,0,-119.602	1/1:161:2,159:2:72:159:5606:-497.828,-41.6291,0	1/1:157:0,157:0:0:157:5560:-500.526,-47.2617,0	0/1:221:120,101:120:4226:101:3585:-256.33,0,-313.886	1/1:164:0,164:0:0:164:5770:-519.419,-49.3689,0	0/1:9:6,3:6:207:3:108:-7.3659,0,-16.2576	1/1:197:1,196:1:36:196:6961:-622.959,-55.7046,0	0/1:79:33,46:33:1184:46:1632:-123.386,0,-83.0869	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:220:0,220:0:0:220:7779:-700.142,-66.2266,0	0/1:81:43,38:43:1536:38:1330:-95.6135,0,-114.15	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:15:8,7:8:288:7:239:-17.3264,0,-21.752	0/1:142:69,73:69:2448:73:2593:-190.871,0,-177.668	1/1:209:0,209:0:0:209:7414:-667.313,-62.9153,0	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/1:128:59,69:59:2104:69:2437:-181.011,0,-151.096	1/1:252:8,244:8:288:244:8627:-750.16,-49.5922,0	0/1:113:43,70:43:1524:70:2457:-187.366,0,-103.437	0/1:91:52,39:52:1836:39:1400:-98.9055,0,-138.124	0/1:316:155,161:155:5440:161:5689:-417.005,0,-393.397	1/1:256:6,249:6:216:249:8876:-779.032,-57.332,0	1/1:95:0,95:0:0:95:3345:-301.269,-28.5979,0	0/1:132:63,69:63:2256:69:2438:-179.939,0,-163.497	1/1:125:0,125:0:0:125:4358:-392.394,-37.6288,0	0/1:33:19,14:19:664:14:487:-34.2252,0,-50.1505	1/1:114:0,112:0:0:112:3959:-356.143,-33.7154,0	0/1:140:71,69:71:2536:69:2442:-177.89,0,-186.347	1/1:300:1,299:1:36:299:10570:-947.621,-86.7107,0	1/1:162:0,162:0:0:162:5756:-518.156,-48.7669,0	0/1:193:84,109:84:2982:109:3846:-288.237,0,-210.477	1/1:133:2,131:2:72:131:4677:-414.254,-33.2003,0	0/1:14:8,6:8:273:6:201:-14.2026,0,-20.6858	0/1:140:72,68:72:2531:68:2394:-173.571,0,-185.886	0/1:152:83,69:83:2951:69:2442:-174.278,0,-220.068	1/1:302:2,300:2:72:300:10554:-942.579,-84.0743,0	1/1:196:1,195:1:36:195:6881:-615.755,-55.4036,0	1/1:184:1,183:1:36:183:6450:-576.995,-51.7912,0	0/1:188:84,104:84:2966:104:3594:-267.073,0,-210.578	1/1:311:4,307:4:129:307:10811:-960.98,-81.6927,0	0/1:67:38,29:38:1356:29:1021:-72.0312,0,-102.171	0/1:163:90,73:90:3191:73:2563:-181.853,0,-238.03	1/1:160:0,160:0:0:160:5609:-504.881,-48.1648,0	0/1:105:54,51:54:1902:51:1765:-127.518,0,-139.843	0/1:174:76,98:76:2679:98:3417:-255.365,0,-188.97	0/1:183:104,79:104:3651:79:2771:-194.543,0,-273.706	1/1:80:0,80:0:0:80:2781:-250.529,-24.0824,0	1/1:284:1,282:1:36:282:9998:-896.168,-81.953,0
chr09	22474344	.	C	T	309180	PASS	AB=0.500515;ABP=3.02597;AC=138;AF=0.734043;AN=188;AO=11298;CIGAR=1X;DP=14722;DPB=14722;DPRA=0;EPP=791.928;EPPR=288.366;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.9637;MQMR=59.9215;NS=94;NUMALT=1;ODDS=4.10175;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=399118;QR=121321;RO=3416;RPL=10912;RPP=21298.1;RPPR=6302.51;RPR=386;RUN=1;SAF=6278;SAP=307.179;SAR=5020;SRF=1909;SRP=105.738;SRR=1507;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:126:0,126:0:0:126:4437:-399.19,-37.9298,0	1/1:146:0,146:0:0:146:5204:-467.313,-43.9504,0	1/1:226:0,226:0:0:226:8021:-721.832,-68.0328,0	1/1:245:0,245:0:0:245:8579:-772.099,-73.7524,0	0/1:64:31,33:31:1095:33:1158:-85.2591,0,-79.5932	0/1:72:37,35:37:1320:35:1256:-91.6711,0,-97.4278	0/1:164:97,66:97:3458:66:2307:-158.462,0,-262.004	0/1:220:103,117:103:3647:117:4141:-306.644,0,-262.204	0/1:211:102,109:102:3632:109:3880:-285.88,0,-263.561	1/1:220:1,219:1:36:219:7679:-687.558,-62.6283,0	0/1:163:71,91:71:2511:91:3218:-240.718,0,-177.102	1/1:208:0,208:0:0:208:7392:-665.317,-62.6142,0	1/1:206:0,206:0:0:206:7320:-658.84,-62.0122,0	1/1:184:0,184:0:0:184:6508:-585.812,-55.3895,0	0/1:159:95,64:95:3392:64:2275:-157.148,0,-257.632	0/1:183:83,100:83:2919:100:3534:-263.154,0,-207.629	0/1:122:61,61:61:2192:61:2172:-159.013,0,-160.82	0/1:111:58,53:58:2072:53:1896:-137.504,0,-153.336	1/1:123:1,122:1:36:122:4368:-389.696,-33.4284,0	1/1:242:0,242:0:0:242:8575:-771.756,-72.8493,0	1/1:330:0,330:0:0:330:11632:-1046.77,-99.3399,0	0/1:97:63,34:63:2252:34:1181:-77.3926,0,-173.743	0/1:235:111,124:111:3896:124:4329:-319.05,0,-280.094	1/1:166:0,166:0:0:166:5848:-526.366,-49.971,0	1/1:160:0,160:0:0:160:5637:-507.457,-48.1648,0	1/1:325:0,325:0:0:325:11491:-1034.05,-97.8348,0	0/1:384:179,205:179:6354:205:7246:-536.607,0,-456.358	0/1:95:53,42:53:1880:42:1503:-106.967,0,-140.878	1/1:295:1,294:1:36:294:10267:-920.382,-85.2056,0	1/1:123:0,123:0:0:123:4369:-393.379,-37.0267,0	0/1:283:132,151:132:4665:151:5327:-394.376,0,-334.822	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:17:11,6:11:384:6:207:-13.8494,0,-29.7725	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	1/1:18:0,18:0:0:18:644:-58.2334,-5.41854,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:423:193,230:193:6888:230:8153:-606.452,0,-492.652	1/1:135:0,135:0:0:135:4786:-430.841,-40.6391,0	1/1:132:0,132:0:0:132:4689:-422.174,-39.736,0	0/1:5:1,4:1:36:4:131:-10.6083,0,-2.09312	0/1:153:84,69:84:3000:69:2408:-170.92,0,-224.175	1/1:84:0,84:0:0:84:2982:-268.613,-25.2865,0	0/1:192:89,103:89:3171:103:3647:-270.64,0,-227.817	0/1:205:97,108:97:3460:108:3846:-284.624,0,-249.874	1/1:184:0,184:0:0:184:6544:-589.046,-55.3895,0	0/1:144:75,69:75:2680:69:2452:-177.587,0,-198.097	0/1:143:54,89:54:1932:89:3160:-241.58,0,-131.109	1/1:160:2,158:2:72:158:5568:-494.391,-41.3281,0	1/1:163:0,163:0:0:163:5708:-513.846,-49.0679,0	0/1:223:128,95:128:4544:95:3336:-233.33,0,-341.772	1/1:162:0,162:0:0:162:5707:-513.759,-48.7669,0	0/1:11:8,3:8:275:3:108:-6.76384,0,-21.7721	1/1:183:1,182:1:36:182:6444:-576.458,-51.4902,0	0/1:76:34,42:34:1216:42:1472:-109.893,0,-86.8683	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:221:0,221:0:0:221:7743:-696.92,-66.5276,0	0/1:84:45,39:45:1580:39:1374:-98.6706,0,-117.201	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:15:8,7:8:275:7:248:-18.1487,0,-20.568	0/1:143:69,73:69:2454:73:2595:-190.693,0,-177.849	1/1:205:0,205:0:0:205:7248:-652.38,-61.7112,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:133:60,73:60:2092:73:2583:-192.644,0,-148.507	1/1:249:8,241:8:280:241:8472:-736.949,-49.4172,0	0/1:116:48,68:48:1695:68:2407:-181.968,0,-117.916	0/1:91:52,39:52:1844:39:1363:-95.5739,0,-138.847	0/1:330:171,159:171:6055:159:5589:-403.797,0,-444.986	1/1:260:6,254:6:212:254:8901:-781.666,-58.843,0	1/1:93:0,93:0:0:93:3306:-297.759,-27.9958,0	0/1:134:66,68:66:2344:68:2412:-176.991,0,-170.882	1/1:123:0,123:0:0:123:4379:-394.227,-37.0267,0	0/1:35:21,14:21:726:14:500:-34.8001,0,-54.8517	1/1:107:0,107:0:0:107:3765:-339.054,-32.2102,0	0/1:141:71,70:71:2536:70:2492:-182.088,0,-186.046	1/1:298:1,297:1:36:297:10416:-933.782,-86.1087,0	1/1:160:0,160:0:0:160:5588:-503.055,-48.1648,0	0/1:189:85,103:85:3012:103:3648:-271.575,0,-214.133	1/1:133:2,131:2:72:131:4673:-413.897,-33.2003,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:138:71,67:71:2513:67:2374:-172.375,0,-184.878	0/1:154:81,71:81:2849:71:2528:-181.675,0,-210.553	1/1:306:2,304:2:72:304:10625:-949.352,-85.2785,0	1/1:197:1,196:1:36:196:6929:-620.079,-55.7046,0	1/1:184:1,182:1:36:182:6433:-575.467,-51.85,0	0/1:196:89,107:89:3183:107:3806:-283.733,0,-227.692	1/1:308:4,304:4:144:304:10790:-957.696,-79.4036,0	0/1:69:40,29:40:1436:29:1032:-72.4224,0,-108.767	0/1:160:88,72:88:3156:72:2553:-181.856,0,-236.1	1/1:152:0,152:0:0:152:5392:-485.359,-45.7566,0	0/1:106:56,50:56:2000:50:1769:-127.582,0,-148.356	0/1:173:78,94:78:2749:94:3356:-250.12,0,-195.511	0/1:190:110,80:110:3915:80:2857:-200.17,0,-295.346	1/1:85:0,85:0:0:85:2991:-269.423,-25.5876,0	1/1:287:0,287:0:0:287:10159:-914.248,-86.3956,0
chr09	22477039	.	A	G	49440.2	PASS	AB=0.531981;ABP=20.0941;AC=138;AF=0.734043;AN=188;AO=2405;CIGAR=1X;DP=3309;DPB=3309;DPRA=0;EPP=5173.42;EPPR=1946.52;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9958;MQMR=59.9878;NS=94;NUMALT=1;ODDS=2.08195;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85721;QR=32228;RO=903;RPL=2399;RPP=5173.42;RPPR=1946.52;RPR=6;RUN=1;SAF=0;SAP=5225.4;SAR=2405;SRF=0;SRP=1963.85;SRR=903;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:775:-70.0712,-6.62266,0	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:41:0,41:0:0:41:1458:-131.516,-12.3422,0	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:77:29,48:29:1044:48:1724:-132.266,0,-71.0955	1/1:22:0,22:0:0:22:783:-70.7929,-6.62266,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/1:15:5,10:5:176:10:356:-27.8658,0,-11.6696	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:15:0,15:0:0:15:538:-48.7558,-4.51545,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:23:14,8:14:500:8:288:-19.4181,0,-38.4937	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:30:13,17:13:468:17:599:-45.2072,0,-33.4287	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	1/1:29:1,28:1:36:28:996:-86.3566,-5.1316,0	0/1:18:8,10:8:258:10:360:-27.3258,0,-18.1144	1/1:85:0,85:0:0:85:3036:-273.469,-25.5876,0	0/1:86:37,49:37:1294:49:1756:-132.435,0,-90.8684	0/1:35:15,20:15:540:20:716:-54.2317,0,-38.4005	1/1:135:1,134:1:36:134:4731:-422.349,-37.0408,0	0/1:145:72,73:72:2557:73:2601:-190.688,0,-186.73	0/1:32:16,16:16:553:16:574:-42.3614,0,-40.461	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:55:22,33:22:784:33:1157:-87.8756,0,-54.3096	0/1:18:10,8:10:360:8:279:-20.029,0,-27.3258	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	1/1:36:0,36:0:0:36:1273:-114.871,-10.8371,0	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:108:52,56:52:1838:56:2012:-148.842,0,-133.185	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:108:57,51:57:2052:51:1828:-132.29,0,-152.44	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:73:0,73:0:0:73:2613:-235.416,-21.9752,0	0/1:148:83,65:83:2942:65:2324:-164.868,0,-220.46	0/1:13:4,9:4:144:9:309:-24.2273,0,-9.40023	1/1:20:0,20:0:0:20:705:-63.7728,-6.0206,0	0/1:75:33,42:33:1169:42:1473:-110.283,0,-82.938	0/1:19:9,10:9:324:10:351:-26.2071,0,-23.7863	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	1/1:42:1,41:1:36:41:1411:-123.681,-9.04499,0	1/1:93:0,93:0:0:93:3339:-300.726,-27.9958,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:193:85,108:85:3037:108:3819:-285.809,0,-215.46	1/1:42:0,42:0:0:42:1480:-133.492,-12.6433,0	0/1:13:6,7:6:216:7:237:-17.7454,0,-15.8771	1/1:30:0,30:0:0:30:1042:-94.0855,-9.0309,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	1/1:14:0,14:0:0:14:492:-44.6118,-4.21442,0	0/1:105:43,62:43:1548:62:2207:-167.286,0,-108.005	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:15:3,12:3:104:12:428:-34.3434,0,-5.18736	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:25:1,24:1:36:24:864:-74.4843,-3.92748,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:24:8,16:8:280:16:567:-44.136,0,-18.3146	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:82:37,45:37:1332:45:1613:-120.775,0,-95.4979	0/1:145:68,77:68:2448:77:2755:-204.542,0,-176.925	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0
chr09	22490902	.	TGAT	AGGT,AGAT	260057	PASS	AB=0.518369,0.475284;ABP=18.2474,30.5971;AC=137,51;AF=0.728723,0.271277;AN=188;AO=9734,2491;CIGAR=1X1M1X1M,1X3M;DP=12311;DPB=12311;DPRA=0,0.832929;EPP=20690.9,5386.12;EPPR=7.35324;GTI=6;LEN=4,1;MEANALT=2.43617,2.75806;MQM=52.2912,59.9526;MQMR=60;NS=94;NUMALT=2;ODDS=1.34266;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=339724,88974;QR=60;RO=2;RPL=52,4;RPP=20690.9,5377.46;RPPR=7.35324;RPR=9682,2487;RUN=1,1;SAF=0,1;SAP=21140.1,5403.47;SAR=9734,2490;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,28,0:0:0:28,0:950,0:-84.4211,-8.42884,0,-84.4211,-8.42884,-84.4211	1/2:160:0,98,62:0:0:98,62:3456,2207:-460.327,-180.231,-150.73,-280.45,0,-261.786	1/1:162:0,162,0:0:0:162,0:5629,0:-503.423,-48.7669,0,-503.423,-48.7669,-503.423	1/1:305:0,300,2:0:0:300,2:10512,68:-943.345,-90.309,0,-937.829,-84.7812,-937.227	1/2:85:0,42,43:0:0:42,43:1490,1544:-247.126,-126.309,-113.666,-121.174,0,-108.229	1/2:136:0,65,69:0:0:65,69:2275,2480:-386.285,-202.39,-182.823,-183.956,0,-163.185	1/2:160:0,94,66:0:0:94,66:3300,2359:-460.66,-192.7,-164.403,-268.314,0,-248.446	1/2:251:0,127,124:0:0:127,124:4438,4428:-719.224,-361.362,-323.132,-358.213,0,-320.885	1/2:98:0,32,66:0:0:32,66:1110,2346:-281.157,-191.53,-181.897,-89.975,0,-70.1071	1/1:117:0,116,0:0:0:116,0:4045,0:-362.744,-34.9195,0,-362.744,-34.9195,-362.744	1/2:55:0,33,22:0:0:33,22:1104,788:-153.429,-64.5158,-54.5818,-89.2607,0,-82.6381	1/1:83:0,83,0:0:0:83,0:2929,0:-262.306,-24.9855,0,-262.306,-24.9855,-262.306	1/1:70:0,69,0:0:0:69,0:2444,0:-218.394,-20.7711,0,-218.394,-20.7711,-218.394	1/1:81:0,79,1:0:0:79,1:2787,36:-249.054,-23.7814,0,-246.116,-20.814,-245.815	1/2:77:0,40,37:0:0:40,37:1403,1324:-222.334,-108.324,-96.2828,-114.365,0,-103.226	1/2:45:0,20,25:0:0:20,25:697,896:-129.796,-73.4346,-67.414,-56.7129,0,-49.1872	1/2:71:0,40,31:0:0:40,31:1370,1099:-200.634,-89.8875,-77.8463,-111.095,0,-101.763	1/2:56:0,35,21:0:0:35,21:1246,756:-162.736,-62.0456,-51.5095,-101.048,0,-94.7265	1/1:35:0,35,0:0:0:35,0:1227,0:-110.222,-10.5361,0,-110.222,-10.5361,-110.222	1/1:377:0,371,1:0:0:371,1:13043,36:-1170.48,-111.682,0,-1167.55,-108.739,-1167.24	1/1:215:0,213,0:0:0:213,0:7398,0:-662.989,-64.1194,0,-662.989,-64.1194,-662.989	1/2:188:0,61,124:0:0:61,124:2115,4426:-532.396,-360.905,-342.542,-171.561,0,-134.233	1/2:54:0,24,29:0:0:24,29:839,1039:-152.817,-84.8702,-77.6455,-68.0725,0,-59.3426	1/1:140:0,140,0:0:0:140,0:4912,0:-440.37,-42.1442,0,-440.37,-42.1442,-440.37	1/1:98:0,98,0:0:0:98,0:3445,0:-308.634,-29.5009,0,-308.634,-29.5009,-308.634	1/1:560:0,557,0:0:0:557,0:19349,0:-1737.65,-167.674,0,-1737.65,-167.674,-1737.65	1/2:212:0,116,95:0:0:116,95:4061,3412:-607.048,-278.462,-243.542,-328.706,0,-300.108	1/2:36:0,14,22:0:0:14,22:499,778:-104.293,-63.7181,-59.5037,-40.9292,0,-34.3065	1/1:370:0,365,0:0:0:365,0:12781,0:-1148.07,-109.876,0,-1148.07,-109.876,-1148.07	1/1:196:0,196,0:0:0:196,0:6837,0:-612.288,-59.0019,0,-612.288,-59.0019,-612.288	1/2:147:0,84,60:0:0:84,60:2949,2143:-414.229,-174.744,-149.457,-239.508,0,-221.447	1/1:6:0,6,0:0:0:6,0:213,0:-19.3188,-1.80618,0,-19.3188,-1.80618,-19.3188	1/2:13:0,2,11:0:0:2,11:70,379:-36.8115,-31.1287,-30.5266,-6.03122,0,-2.71989	1/2:7:0,5,2:0:0:5,2:180,72:-20.8521,-6.23466,-4.72951,-14.9769,0,-14.3748	1/1:4:0,4,0:0:0:4,0:144,0:-13.2573,-1.20412,0,-13.2573,-1.20412,-13.2573	1/2:5:0,3,2:0:0:3,2:92,72:-13.4765,-6.23466,-5.33157,-7.57887,0,-6.97681	1/2:241:0,124,117:0:0:124,117:4339,4186:-694.113,-341.691,-304.363,-352.775,0,-317.555	1/1:313:0,312,0:0:0:312,0:10772,0:-963.501,-93.9214,0,-963.501,-93.9214,-963.501	1/1:72:0,72,0:0:0:72,0:2505,0:-223.676,-21.6742,0,-223.676,-21.6742,-223.676	1/2:3:0,1,2:0:0:1,2:36,72:-9.16364,-6.23466,-5.93363,-3.2882,0,-2.68614	1/2:233:0,135,98:0:0:135,98:4695,3493:-665.681,-285.08,-244.441,-380.954,0,-351.453	1/1:45:0,45,0:0:0:45,0:1550,0:-138.973,-13.5464,0,-138.973,-13.5464,-138.973	1/2:194:1,103,88:1:30:103,88:3592,3102:-540.988,-250.186,-221.578,-288.741,0,-264.648	1/2:64:0,32,31:0:0:32,31:1114,1116:-181.307,-91.0599,-81.427,-90.2413,0,-80.9093	1/1:71:0,71,0:0:0:71,0:2438,0:-219.285,-21.3731,0,-219.285,-21.3731,-219.285	1/2:121:0,60,57:0:0:60,57:2072,2044:-334.839,-166.773,-148.711,-168.117,0,-150.958	1/2:158:0,82,74:0:0:82,74:2855,2643:-446.201,-215.464,-190.78,-230.769,0,-208.493	1/1:326:0,321,3:0:0:321,3:11204,95:-1005.03,-96.6306,0,-997.386,-88.9586,-996.483	1/1:178:0,177,0:0:0:177,0:6218,0:-557.916,-53.2823,0,-557.916,-53.2823,-557.916	1/2:177:0,102,74:0:0:102,74:3515,2656:-501.523,-216.756,-186.051,-284.865,0,-262.589	1/1:235:0,233,0:0:0:233,0:8140,0:-730.386,-70.14,0,-730.386,-70.14,-730.386	1/2:4:0,2,2:0:0:2,2:64,68:-10.9963,-5.85565,-5.25359,-5.47042,0,-4.86836	1/1:239:0,237,0:0:0:237,0:8256,0:-737.052,-71.3441,0,-737.052,-71.3441,-737.052	1/2:79:0,45,34:0:0:45,34:1549,1212:-224.796,-99.1507,-85.6044,-125.996,0,-115.761	1/2:7:0,1,6:0:0:1,6:36,216:-20.9078,-17.9843,-17.6833,-3.28202,0,-1.47584	1/1:194:0,192,0:0:0:192,0:6653,0:-596.539,-57.7978,0,-596.539,-57.797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chr09	22502673	.	GAAC	CAAT,CAAC	155237	PASS	AB=0.514067,0.482569;ABP=8.63089,11.6404;AC=137,51;AF=0.728723,0.271277;AN=188;AO=5726,1586;CIGAR=1X2M1X,1X3M;DP=7339;DPB=7339;DPRA=78.9032,0.807563;EPP=12436.9,3446.97;EPPR=0;GTI=2;LEN=4,1;MEANALT=1.86022,2.21429;MQM=59.5339,59.9521;MQMR=0;NS=94;NUMALT=2;ODDS=0.132861;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=201763,56091;QR=0;RO=0;RPL=0,0;RPP=12436.9,3446.97;RPPR=0;RPR=5726,1586;RUN=1,1;SAF=5726,1586;SAP=12436.9,3446.97;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20,0:0:0:20,0:702,0:-63.4167,-6.0206,0,-63.4167,-6.0206,-63.4167	1/2:89:0,43,46:0:0:43,46:1508,1619:-254.338,-132.151,-119.207,-122.538,0,-108.69	1/1:75:0,75,0:0:0:75,0:2640,0:-237.788,-22.5773,0,-237.788,-22.5773,-237.788	1/1:120:0,120,0:0:0:120,0:4232,0:-381.033,-36.1236,0,-381.033,-36.1236,-381.033	1/2:56:0,30,25:0:0:30,25:1076,883:-159.606,-71.8414,-62.8105,-87.8556,0,-80.3299	1/2:30:0,13,17:0:0:13,17:461,612:-87.1773,-50.2959,-46.3825,-37.235,0,-32.1174	1/2:73:0,42,30:0:0:42,30:1457,1046:-203.546,-85.1257,-72.4824,-118.476,0,-109.445	1/2:88:0,42,46:0:0:42,46:1478,1617:-252.272,-131.97,-119.327,-120.653,0,-106.805	1/2:57:0,30,27:0:0:30,27:1044,968:-164.118,-79.3096,-70.2787,-85.1621,0,-77.0342	1/1:92:0,92,0:0:0:92,0:3282,0:-295.591,-27.6948,0,-295.591,-27.6948,-295.591	1/2:96:0,45,50:0:0:45,50:1600,1759:-273.588,-143.25,-129.704,-130.399,0,-115.348	1/1:80:0,80,0:0:0:80,0:2848,0:-256.363,-24.0824,0,-256.363,-24.0824,-256.363	1/1:86:0,86,0:0:0:86,0:3041,0:-273.709,-25.8886,0,-273.709,-25.8886,-273.709	1/1:119:0,117,0:0:0:117,0:4145,0:-372.913,-35.2205,0,-372.913,-35.2205,-372.913	1/2:118:0,63,55:0:0:63,55:2214,1943:-338.795,-158.589,-139.624,-180.558,0,-164.001	1/2:62:0,34,28:0:0:34,28:1190,992:-177.972,-81.1656,-70.9305,-97.1583,0,-88.7294	1/2:90:0,41,48:0:0:41,48:1443,1703:-256.249,-138.79,-126.448,-117.541,0,-103.091	1/2:89:0,49,40:0:0:49,40:1754,1412:-258.324,-115.336,-100.586,-143.343,0,-131.302	1/1:67:0,67,0:0:0:67,0:2376,0:-214.078,-20.169,0,-214.078,-20.169,-214.078	1/1:142:0,142,0:0:0:142,0:4979,0:-448.249,-42.7463,0,-448.249,-42.7463,-448.249	1/1:70:0,70,0:0:0:70,0:2427,0:-218.64,-21.0721,0,-218.64,-21.0721,-218.64	1/2:92:0,32,60:0:0:32,60:1146,2135:-267.812,-174.356,-164.723,-93.8138,0,-75.752	1/2:24:0,10,14:0:0:10,14:358,504:-70.6777,-41.4837,-38.4734,-29.5526,0,-25.3382	1/1:42:0,42,0:0:0:42,0:1476,0:-133.132,-12.6433,0,-133.132,-12.6433,-133.132	1/1:27:0,27,0:0:0:27,0:939,0:-84.8174,-8.12781,0,-84.8174,-8.12781,-84.8174	1/1:186:0,186,0:0:0:186,0:6511,0:-586.073,-55.9916,0,-586.073,-55.9916,-586.073	1/2:114:0,60,53:0:0:60,53:2136,1883:-327.583,-153.502,-135.44,-174.145,0,-158.19	1/2:31:0,20,11:0:0:20,11:709,392:-90.0635,-32.3087,-26.2881,-58.1103,0,-54.799	1/1:180:0,180,0:0:0:180,0:6367,0:-573.112,-54.1854,0,-573.112,-54.1854,-573.112	1/1:94:0,92,2:0:0:92,2:3241,71:-291.535,-27.6948,0,-285.75,-21.5548,-285.148	1/2:74:0,35,39:0:0:35,39:1226,1388:-213.113,-113.392,-102.856,-100.073,0,-88.3325	1/1:8:0,8,0:0:0:8,0:280,0:-25.5387,-2.40824,0,-25.5387,-2.40824,-25.5387	1/2:10:0,3,7:0:0:3,7:102,252:-29.1892,-20.9217,-20.0187,-8.61329,0,-6.50608	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:8:0,4,4:0:0:4,4:144,140:-23.4497,-11.7405,-10.5363,-12.0635,0,-10.8593	1/2:261:0,144,117:0:0:144,117:5083,4138:-751.297,-337.387,-294.039,-414.264,0,-379.043	1/1:148:0,147,0:0:0:147,0:5167,0:-464.834,-44.2514,0,-464.834,-44.2514,-464.834	1/1:81:0,81,0:0:0:81,0:2871,0:-258.55,-24.3834,0,-258.55,-24.3834,-258.55	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:95:0,40,55:0:0:40,55:1404,1951:-273.561,-159.309,-147.267,-114.605,0,-98.0484	1/1:45:0,45,0:0:0:45,0:1609,0:-145.087,-13.5464,0,-145.087,-13.5464,-145.087	1/2:68:0,35,33:0:0:35,33:1220,1176:-195.409,-96.2138,-85.6777,-99.5476,0,-89.6136	1/2:66:0,34,32:0:0:34,32:1217,1136:-192.157,-92.9159,-82.6809,-99.5974,0,-89.9644	1/1:79:0,78,1:0:0:78,1:2729,36:-245.482,-23.4803,0,-242.545,-20.1831,-242.244	1/2:51:0,27,24:0:0:27,24:954,851:-147.377,-69.6838,-61.556,-78.0472,0,-70.8225	1/2:116:0,71,45:0:0:71,45:2466,1612:-332.155,-131.824,-110.451,-200.685,0,-187.138	1/1:126:0,126,0:0:0:126,0:4432,0:-399.016,-37.9298,0,-399.016,-37.9298,-399.016	1/1:96:0,96,0:0:0:96,0:3332,0:-300.078,-28.8989,0,-300.078,-28.8989,-300.078	1/2:78:0,46,32:0:0:46,32:1637,1131:-225.878,-92.4648,-78.6174,-133.767,0,-124.134	1/1:139:0,137,0:0:0:137,0:4857,0:-437.022,-41.2411,0,-437.022,-41.2411,-437.022	1/2:11:0,5,5:0:0:5,5:178,176:-28.8847,-14.3713,-12.8661,-14.5543,0,-13.0491	1/1:136:0,134,0:0:0:134,0:4715,0:-423.91,-40.338,0,-423.91,-40.338,-423.91	1/2:46:0,24,21:0:0:24,21:840,748:-129.385,-61.0453,-53.8206,-68.4132,0,-62.0916	1/2:15:0,7,8:0:0:7,8:244,280:-42.9739,-23.1311,-21.0239,-20.1919,0,-17.7837	1/1:86:0,86,0:0:0:86,0:3057,0:-275.324,-25.8886,0,-275.324,-25.8886,-275.324	1/2:19:0,13,6:0:0:13,6:453,208:-54.0932,-17.2529,-13.3395,-37.1874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chr09	22541746	.	A	G	155337	PASS	AB=0.489991;ABP=6.92243;AC=136;AF=0.723404;AN=188;AO=7353;CIGAR=1X;DP=9658;DPB=9658;DPRA=20.7591;EPP=15969.8;EPPR=5006.08;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.9956;MQMR=59.9766;NS=94;NUMALT=1;ODDS=4.37244;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262282;QR=82449;RO=2304;RPL=0;RPP=15969.8;RPPR=5006.08;RPR=7353;RUN=1;SAF=7353;SAP=15969.8;SAR=0;SRF=2304;SRP=5006.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	0/1:240:129,111:129:4636:111:3974:-285.603,0,-345.154	1/1:98:0,98:0:0:98:3456:-311.254,-29.5009,0	1/1:302:0,301:0:0:301:10747:-966.78,-90.61,0	0/1:76:32,44:32:1148:44:1564:-118.173,0,-80.7516	0/1:34:14,20:14:500:20:716:-54.5327,0,-35.0726	0/1:148:72,76:72:2588:76:2670:-195.992,0,-188.616	0/1:181:99,82:99:3544:82:2944:-210.707,0,-264.682	0/1:108:57,51:57:2028:51:1807:-130.4,0,-150.273	1/1:138:0,138:0:0:138:4936:-444.39,-41.5421,0	0/1:43:25,18:25:900:18:640:-44.985,0,-68.3767	1/1:59:0,59:0:0:59:2090:-188.369,-17.7608,0	1/1:71:0,71:0:0:71:2512:-226.33,-21.3731,0	1/1:62:0,62:0:0:62:2196:-197.906,-18.6639,0	0/1:64:30,34:30:1080:34:1216:-90.4806,0,-78.2473	0/1:47:27,20:27:968:20:720:-50.9804,0,-73.289	0/1:56:22,34:22:784:34:1194:-90.9061,0,-54.0262	0/1:79:37,42:37:1328:42:1486:-110.252,0,-96.0409	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:213:0,213:0:0:213:7594:-683.498,-64.1194,0	1/1:171:0,171:0:0:171:6056:-545.145,-51.4761,0	0/1:165:128,37:128:4565:37:1323:-69.702,0,-361.346	0/1:102:47,55:47:1676:55:1972:-147.05,0,-120.422	1/1:129:0,129:0:0:129:4604:-414.526,-38.8329,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:328:0,328:0:0:328:11701:-1052.93,-98.7378,0	0/1:243:144,99:144:5130:99:3537:-245.387,0,-388.691	0/1:33:16,17:16:576:17:608:-45.118,0,-42.241	1/1:382:0,382:0:0:382:13647:-1228.01,-114.993,0	1/1:144:0,144:0:0:144:5152:-463.822,-43.3483,0	0/1:112:54,58:54:1936:58:2065:-152.405,0,-140.801	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:169:76,93:76:2728:93:3298:-246.166,0,-194.889	1/1:244:0,244:0:0:244:8712:-784.073,-73.4513,0	1/1:46:0,46:0:0:46:1631:-147.078,-13.8474,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:143:74,69:74:2637:69:2468:-179.327,0,-194.528	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:184:90,94:90:3224:94:3344:-245.789,0,-234.835	0/1:73:39,34:39:1356:34:1220:-88.1316,0,-100.36	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:118:62,56:62:2232:56:1995:-144.302,0,-165.622	0/1:172:77,95:77:2756:95:3403:-254.707,0,-196.505	1/1:239:2,237:2:72:237:8411:-750.162,-65.1094,0	1/1:148:0,148:0:0:148:5298:-476.955,-44.5524,0	0/1:191:88,103:88:3156:103:3672:-273.188,0,-226.768	1/1:144:0,144:0:0:144:5172:-465.618,-43.3483,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:148:0,148:0:0:148:5280:-475.338,-44.5524,0	0/1:33:18,15:18:640:15:528:-37.9174,0,-47.9953	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	1/1:126:0,126:0:0:126:4504:-405.529,-37.9298,0	0/1:36:18,18:18:644:18:648:-47.8148,0,-47.4535	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:25:14,11:14:485:11:396:-28.457,0,-36.4512	0/1:46:20,26:20:720:26:932:-70.3515,0,-51.2814	1/1:92:0,92:0:0:92:3261:-293.711,-27.6948,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:155:76,79:76:2728:79:2828:-208.099,0,-199.103	1/1:215:2,213:2:72:213:7602:-677.383,-57.8847,0	0/1:81:39,42:39:1400:42:1492:-110.191,0,-101.916	0/1:126:60,66:60:2125:66:2372:-175.808,0,-153.587	0/1:168:77,91:77:2756:91:3256:-242.688,0,-197.709	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:22:1,21:1:36:21:752:-64.408,-3.02439,0	0/1:64:39,25:39:1396:25:896:-61.6944,0,-106.673	1/1:78:0,78:0:0:78:2777:-250.17,-23.4803,0	0/1:25:9,16:9:324:16:560:-43.2024,0,-21.9801	1/1:101:0,101:0:0:101:3617:-325.736,-30.404,0	0/1:80:37,43:37:1324:43:1532:-114.091,0,-95.3797	1/1:116:0,116:0:0:116:4144:-373.144,-34.9195,0	1/1:170:0,170:0:0:170:6068:-546.218,-51.1751,0	0/1:93:50,43:50:1796:43:1527:-109.726,0,-133.927	1/1:121:0,121:0:0:121:4332:-390.056,-36.4246,0	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:123:71,52:71:2548:52:1834:-128.311,0,-192.544	0/1:181:78,103:78:2800:103:3680:-276.917,0,-197.753	1/1:242:0,242:0:0:242:8676:-780.83,-72.8493,0	1/1:112:0,112:0:0:112:4016:-361.628,-33.7154,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	0/1:119:56,63:56:1999:63:2246:-166.581,0,-144.361	1/1:140:1,139:1:36:139:4971:-443.94,-38.5459,0	0/1:51:25,26:25:896:26:908:-66.68,0,-65.6078	0/1:82:34,48:34:1224:48:1703:-128.871,0,-85.7826	1/1:63:0,63:0:0:63:2216:-199.702,-18.9649,0	0/1:27:15,12:15:540:12:419:-29.9149,0,-40.8087	0/1:73:33,40:33:1184:40:1414:-105.58,0,-84.8931	0/1:71:51,20:51:1832:20:712:-43.0335,0,-143.788	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:100:0,100:0:0:100:3572:-321.686,-30.103,0
chr09	22575941	.	G	A	150934	PASS	AB=0.523388;ABP=21.8014;AC=140;AF=0.744681;AN=188;AO=7077;CIGAR=1X;DP=8975;DPB=8975;DPRA=0;EPP=15370.5;EPPR=4120.12;GTI=4;LEN=1;MEANALT=1.02128;MQM=58.9846;MQMR=59.9884;NS=94;NUMALT=1;ODDS=1.41291;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253093;QR=67587;RO=1896;RPL=7077;RPP=15370.5;RPPR=4120.12;RPR=0;RUN=1;SAF=7077;SAP=15370.5;SAR=0;SRF=1896;SRP=4120.12;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,56:0:0:56:2000:-180.265,-16.8577,0	0/1:116:55,61:55:1942:61:2180:-161.511,0,-140.133	1/1:165:0,165:0:0:165:5905:-531.482,-49.67,0	1/1:111:1,110:1:36:110:3945:-351.503,-29.8161,0	0/1:83:55,28:55:1976:28:1008:-65.8752,0,-153.129	0/1:64:23,41:23:828:41:1461:-112.518,0,-55.5782	0/1:121:53,68:53:1883:68:2433:-182.766,0,-133.323	0/1:137:57,80:57:2032:80:2868:-216.997,0,-141.911	0/1:131:77,54:77:2723:54:1926:-134.163,0,-205.874	1/1:51:0,51:0:0:51:1806:-162.712,-15.3525,0	0/1:67:30,37:30:1067:37:1324:-99.1887,0,-76.1718	1/1:74:0,74:0:0:74:2656:-239.143,-22.2762,0	1/1:81:0,81:0:0:81:2892:-260.406,-24.3834,0	1/1:111:0,111:0:0:111:3919:-352.749,-33.4143,0	0/1:75:41,34:41:1453:34:1224:-87.8753,0,-108.487	0/1:59:25,34:25:896:34:1224:-92.6613,0,-63.1996	0/1:97:55,42:55:1972:42:1493:-105.387,0,-148.555	0/1:65:31,34:31:1116:34:1212:-89.7836,0,-81.1847	1/1:54:0,54:0:0:54:1944:-175.2,-16.2556,0	1/1:144:0,144:0:0:144:5137:-461.529,-43.3483,0	1/1:126:0,126:0:0:126:4497:-404.799,-37.9298,0	0/1:78:45,33:45:1620:33:1184:-83.0255,0,-122.61	0/1:59:30,29:30:1065:29:1044:-76.4582,0,-78.399	1/1:121:0,121:0:0:121:4325:-389.287,-36.4246,0	1/1:71:0,71:0:0:71:2531:-227.679,-21.3731,0	1/1:237:0,237:0:0:237:8479:-762.367,-71.3441,0	0/1:194:78,116:78:2774:116:4137:-313.934,0,-191.498	0/1:31:17,14:17:599:14:504:-36.3662,0,-44.9062	1/1:141:0,141:0:0:141:5047:-453.871,-42.4452,0	1/1:168:0,168:0:0:168:6025:-542.26,-50.573,0	0/1:135:73,62:73:2597:62:2208:-158.138,0,-193.338	1/1:16:0,16:0:0:16:576:-52.1299,-4.81648,0	0/1:29:6,23:6:212:23:816:-65.0318,0,-10.6949	0/1:12:2,10:2:72:10:356:-28.7689,0,-3.22436	1/1:37:0,37:0:0:37:1315:-118.651,-11.1381,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:184:83,101:83:2964:101:3624:-270.758,0,-211.604	1/1:220:0,220:0:0:220:7896:-709.837,-66.2266,0	1/1:84:0,84:0:0:84:2993:-269.493,-25.2865,0	0/1:2:1,1:1:21:1:36:-2.99621,0,-1.49789	0/1:206:95,111:95:3393:111:3958:-294.397,0,-243.572	1/1:64:0,64:0:0:64:2296:-206.856,-19.2659,0	1/1:164:0,164:0:0:164:5876:-528.793,-49.3689,0	1/1:65:0,65:0:0:65:2336:-210.431,-19.567,0	1/1:51:0,51:0:0:51:1813:-163.378,-15.3525,0	0/1:114:69,45:69:2430:45:1612:-110.896,0,-184.636	0/1:154:82,72:82:2933:72:2580:-185.983,0,-217.844	1/1:135:1,134:1:36:134:4820:-430.259,-37.0408,0	1/1:113:0,113:0:0:113:4042:-363.771,-34.0164,0	0/1:105:54,50:54:1936:50:1792:-129.788,0,-142.85	1/1:152:0,152:0:0:152:5404:-486.087,-45.7566,0	0/1:13:3,10:3:108:10:360:-28.8239,0,-6.16178	1/1:184:1,183:1:36:183:6524:-583.332,-51.7912,0	0/1:66:23,43:23:813:43:1539:-118.655,0,-53.6187	0/1:43:11,32:11:381:32:1152:-91.01,0,-21.6763	1/1:91:0,91:0:0:91:3244:-291.82,-27.3937,0	0/1:36:14,22:14:485:22:784:-59.9695,0,-33.1395	1/1:7:0,7:0:0:7:248:-22.6583,-2.10721,0	0/1:9:5,4:5:180:4:144:-10.6,0,-13.838	0/1:106:54,52:54:1909:52:1864:-136.085,0,-140.177	1/1:177:3,174:3:108:174:6232:-550.691,-43.2071,0	1/1:7:0,7:0:0:7:252:-23.0261,-2.10721,0	0/1:101:50,51:50:1773:51:1828:-134.221,0,-129.447	1/1:149:2,147:2:72:147:5280:-468.309,-38.0167,0	0/1:82:32,50:32:1133:50:1796:-137.236,0,-77.5922	0/1:52:26,26:26:932:26:936:-68.8954,0,-68.5453	0/1:172:83,89:83:2976:89:3177:-234.297,0,-216.295	1/1:121:0,121:0:0:121:4325:-389.182,-36.4246,0	1/1:37:0,37:0:0:37:1328:-119.726,-11.1381,0	0/1:72:32,40:32:1152:40:1440:-108.188,0,-82.316	1/1:118:0,118:0:0:118:4209:-378.728,-35.5215,0	0/1:25:10,15:10:360:15:536:-41.0449,0,-25.2186	1/1:155:0,155:0:0:155:5523:-496.997,-46.6597,0	0/1:73:43,30:43:1533:30:1076:-75.1418,0,-116.286	1/1:214:1,213:1:36:213:7604:-680.318,-60.8221,0	1/1:131:0,131:0:0:131:4650:-418.606,-39.4349,0	0/1:89:34,55:34:1224:55:1976:-151.21,0,-83.6754	1/1:82:2,80:2:72:80:2850:-249.826,-17.8477,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:102:39,63:39:1400:63:2260:-172.913,0,-95.5941	0/1:83:33,50:33:1184:50:1792:-136.541,0,-81.8828	1/1:254:0,254:0:0:254:9092:-818.082,-76.4616,0	1/1:81:0,81:0:0:81:2916:-262.598,-24.3834,0	1/1:45:0,45:0:0:45:1616:-145.713,-13.5464,0	0/1:75:40,35:40:1436:35:1256:-90.7541,0,-106.96	1/1:127:2,125:2:72:125:4464:-394.957,-31.3941,0	0/1:43:25,18:25:900:18:644:-45.3463,0,-68.3767	0/1:84:40,44:40:1440:44:1571:-116.394,0,-104.611	1/1:67:0,67:0:0:67:2385:-214.835,-20.169,0	0/1:90:39,51:39:1396:51:1836:-138.292,0,-98.8464	0/1:155:60,94:60:2116:94:3365:-256.346,0,-143.987	0/1:56:46,10:46:1640:10:360:-15.8826,0,-131.031	1/1:86:0,86:0:0:86:3084:-277.668,-25.8886,0	1/1:75:0,75:0:0:75:2680:-241.274,-22.5773,0
chr09	22576024	.	A	G	186241	PASS	AB=0.568874;ABP=166.628;AC=140;AF=0.752688;AN=186;AO=8724;CIGAR=1X;DP=10460;DPB=10460;DPRA=0;EPP=18903.5;EPPR=3748.8;GTI=5;LEN=1;MEANALT=1.10753;MQM=59.7126;MQMR=59.8017;NS=93;NUMALT=1;ODDS=0.295804;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=309095;QR=61749;RO=1725;RPL=5;RPP=18903.5;RPPR=3748.8;RPR=8719;RUN=1;SAF=0;SAP=18946.9;SAR=8724;SRF=0;SRP=3748.8;SRR=1725;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1863:-167.948,-15.6536,0	0/1:153:59,94:59:2124:94:3351:-255.736,0,-145.361	1/1:175:0,175:0:0:175:6228:-560.573,-52.6803,0	1/1:353:1,352:1:36:352:12503:-1121.28,-102.665,0	0/1:101:47,54:47:1671:54:1904:-141.179,0,-120.258	0/1:42:10,32:10:360:32:1140:-90.2646,0,-20.101	0/1:162:70,92:70:2496:92:3269:-245.663,0,-176.119	0/1:149:59,90:59:2112:90:3203:-243.519,0,-145.479	0/1:100:44,56:44:1580:56:1993:-149.522,0,-112.382	1/1:118:0,118:0:0:118:4181:-376.433,-35.5215,0	0/1:35:19,15:19:684:15:506:-35.2644,0,-51.2955	1/1:65:0,65:0:0:65:2328:-209.772,-19.567,0	1/1:69:0,69:0:0:69:2407:-216.862,-20.7711,0	1/1:47:0,47:0:0:47:1638:-147.698,-14.1484,0	0/1:66:36,30:36:1272:30:1076:-77.2825,0,-94.9098	0/1:64:42,22:42:1484:22:779:-51.1569,0,-114.577	0/1:40:21,19:21:756:19:641:-45.9618,0,-56.3227	0/1:29:15,14:15:536:14:495:-36.1532,0,-39.8416	1/1:18:0,18:0:0:18:619:-56.0058,-5.41854,0	1/1:366:1,365:1:36:365:12978:-1163.82,-106.579,0	1/1:138:0,138:0:0:138:4889:-440.141,-41.5421,0	0/1:147:87,60:87:3132:60:2131:-147.803,0,-237.852	0/1:89:38,51:38:1355:51:1823:-137.554,0,-95.4487	1/1:153:0,151:0:0:151:5360:-482.144,-45.4555,0	1/1:88:0,88:0:0:88:3113:-279.475,-26.4906,0	1/1:342:1,341:1:36:341:12071:-1082.58,-99.354,0	0/1:156:73,83:73:2596:83:2949:-218.677,0,-186.917	0/1:30:13,17:13:468:17:608:-46.0211,0,-33.4241	1/1:379:0,378:0:0:378:13394:-1204.97,-113.789,0	1/1:232:2,230:2:72:230:8144:-726.014,-63.0022,0	0/1:145:69,76:69:2462:76:2692:-198.852,0,-178.184	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:9:0,9:0:0:9:320:-29.139,-2.70927,0	1/1:6:0,6:0:0:6:216:-19.7871,-1.80618,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:153:69,84:69:2484:84:2948:-219.438,0,-177.754	1/1:311:0,311:0:0:311:11008:-990.487,-93.6203,0	1/1:44:0,44:0:0:44:1513:-136.45,-13.2453,0	.:.:.:.:.:.:.:.	0/1:229:102,127:102:3637:127:4509:-336.988,0,-258.586	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	1/1:222:0,221:0:0:221:7808:-702.347,-66.5276,0	1/1:48:0,48:0:0:48:1676:-151.118,-14.4494,0	1/1:51:0,51:0:0:51:1776:-160.114,-15.3525,0	0/1:81:29,52:29:1040:52:1859:-143.194,0,-69.5291	0/1:180:76,104:76:2728:104:3677:-276.939,0,-191.567	1/1:336:2,334:2:72:334:11845:-1059.06,-94.3094,0	1/1:188:0,188:0:0:188:6696:-602.699,-56.5936,0	0/1:143:60,83:60:2156:83:2949:-222.591,0,-151.26	1/1:193:1,192:1:36:192:6835:-611.618,-54.5005,0	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	1/1:192:2,190:2:63:190:6733:-600.047,-51.8146,0	0/1:39:18,21:18:648:21:747:-55.8141,0,-46.9099	0/1:7:2,5:2:72:5:176:-14.032,0,-4.72951	1/1:209:0,208:0:0:208:7375:-663.271,-62.6142,0	0/1:62:18,44:18:648:44:1560:-121.984,0,-39.988	1/1:3:0,3:0:0:3:99:-9.23658,-0.90309,0	0/1:15:8,7:8:279:7:237:-16.951,0,-20.9321	0/1:90:36,54:36:1292:54:1897:-143.906,0,-89.4911	1/1:92:0,92:0:0:92:3244:-292.166,-27.6948,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:211:64,147:64:2296:147:5202:-404.796,0,-143.384	1/1:283:4,279:4:144:279:9922:-879.586,-71.8779,0	0/1:72:27,45:27:972:45:1601:-122.704,0,-66.1191	0/1:101:32,69:32:1144:69:2455:-190.793,0,-72.8609	0/1:151:61,90:61:2184:90:3212:-243.814,0,-151.277	1/1:161:0,161:0:0:161:5711:-514.092,-48.4658,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:112:44,68:44:1571:68:2405:-182.981,0,-107.962	1/1:62:0,62:0:0:62:2193:-197.634,-18.6639,0	0/1:30:8,22:8:288:22:788:-62.2092,0,-17.2365	1/1:161:0,160:0:0:160:5661:-508.916,-48.1648,0	0/1:38:18,20:18:644:20:700:-51.8787,0,-46.8515	1/1:159:1,157:1:36:157:5574:-498.176,-44.3043,0	1/1:221:0,220:0:0:220:7849:-706.034,-66.2266,0	0/1:106:57,49:57:2048:49:1747:-125.568,0,-152.679	1/1:117:0,117:0:0:117:4140:-372.769,-35.2205,0	1/1:9:0,8:0:0:8:288:-25.9076,-2.40824,0	0/1:141:55,86:55:1971:86:3060:-233.177,0,-135.211	0/1:190:66,123:66:2372:123:4321:-331.793,0,-156.364	1/1:280:0,280:0:0:280:9932:-893.693,-84.2884,0	1/1:83:0,83:0:0:83:2924:-263.393,-24.9855,0	1/1:43:0,43:0:0:43:1468:-132.4,-12.9443,0	0/1:65:24,41:24:864:41:1472:-113.017,0,-58.5156	1/1:124:0,124:0:0:124:4359:-392.385,-37.3277,0	0/1:39:19,20:19:669:20:716:-53.0275,0,-48.7866	0/1:66:23,43:23:828:43:1480:-113.615,0,-54.9728	1/1:44:0,44:0:0:44:1550:-139.784,-13.2453,0	0/1:31:16,15:16:567:15:527:-38.4283,0,-42.0288	0/1:51:34,17:34:1224:17:612:-40.0517,0,-95.1053	0/1:40:32,8:32:1148:8:284:-13.8622,0,-91.5839	1/1:132:0,132:0:0:132:4652:-418.822,-39.736,0	1/1:75:0,75:0:0:75:2674:-240.899,-22.5773,0
chr09	22576038	.	C	G	26634.2	PASS	AB=0.430465;ABP=170.914;AC=46;AF=0.247312;AN=186;AO=1732;CIGAR=1X;DP=10486;DPB=10486;DPRA=0.967582;EPP=3764;EPPR=18921;GTI=5;LEN=1;MEANALT=1.01887;MQM=59.7881;MQMR=59.7321;NS=93;NUMALT=1;ODDS=1.0851;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61941;QR=313036;RO=8752;RPL=1732;RPP=3764;RPPR=18921;RPR=0;RUN=1;SAF=0;SAP=3764;SAR=1732;SRF=0;SRP=19007.7;SRR=8752;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.513	0/1:154:97,57:97:3477:57:2036:-137.144,0,-266.764	0/0:173:173,0:173:6173:0:0:0,-52.0782,-555.648	0/0:353:352,1:352:12603:1:36:0,-102.665,-1130.28	0/1:105:57,48:57:2040:48:1724:-123.822,0,-152.092	0/1:43:32,11:32:1152:11:388:-22.3131,0,-91.0425	0/1:163:93,70:93:3336:70:2516:-177.614,0,-251.389	0/1:151:91,60:91:3252:60:2148:-148.115,0,-247.238	0/1:101:55,46:55:1972:46:1646:-118.016,0,-147.306	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.143	0/1:37:16,21:16:576:21:747:-56.4162,0,-41.0369	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.41	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.502	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.649	0/1:66:30,36:30:1071:36:1292:-96.7134,0,-76.8313	0/1:64:22,42:22:792:42:1504:-116.379,0,-52.3305	0/1:41:20,21:20:716:21:739:-54.4868,0,-52.4255	0/1:29:14,15:14:504:15:540:-40.2033,0,-36.9682	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/0:365:365,0:365:13068:0:0:0,-109.876,-1175.09	0/0:140:140,0:140:5011:0:0:0,-42.1442,-451.109	0/1:151:62,89:62:2194:89:3175:-240.518,0,-152.249	0/1:89:50,39:50:1796:39:1388:-98.4179,0,-135.128	0/0:154:153,0:153:5492:0:0:0,-46.0576,-494.019	0/0:92:92,0:92:3279:0:0:0,-27.6948,-294.696	0/0:346:345,1:345:12341:1:36:0,-100.558,-1106.85	0/1:155:83,72:83:2938:72:2580:-185.78,0,-217.988	0/1:30:17,13:17:608:13:468:-33.4241,0,-46.0211	0/0:380:380,0:380:13612:0:0:0,-114.391,-1224.84	0/0:231:229,2:229:8174:2:72:0,-62.7012,-728.747	0/1:147:79,68:79:2844:68:2439:-175.513,0,-211.849	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0704	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5025	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7871	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:153:83,70:83:2980:70:2508:-179.913,0,-222.317	0/0:307:307,0:307:10932:0:0:0,-92.4162,-983.53	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.762	.:.:.:.:.:.:.:.	0/1:229:126,103:126:4511:103:3696:-263.893,0,-337.061	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:223:223,0:223:7950:0:0:0,-67.1297,-715.474	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.441	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.034	0/1:80:51,29:51:1832:29:1040:-69.8301,0,-141.019	0/1:183:108,75:108:3834:75:2692:-187.426,0,-290.15	0/0:331:330,1:330:11793:1:36:0,-96.0426,-1057.59	0/0:186:186,0:186:6649:0:0:0,-55.9916,-598.471	0/1:143:84,59:84:2976:59:2108:-146.942,0,-225.016	0/0:188:187,1:187:6720:1:36:0,-52.9954,-601.265	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:194:194,0:194:6930:0:0:0,-58.3998,-623.738	0/1:42:23,19:23:820:19:684:-49.2452,0,-61.4718	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.3991	0/0:206:206,0:206:7380:0:0:0,-62.0122,-664.174	0/1:61:43,18:43:1544:18:648:-40.2891,0,-120.388	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.3209	0/1:88:51,37:51:1817:37:1332:-93.6836,0,-137.31	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.054	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:215:150,65:150:5388:65:2319:-144.248,0,-420.252	0/0:282:278,4:278:9914:4:144:0,-71.5768,-878.858	0/1:74:47,27:47:1677:27:963:-64.7051,0,-128.939	0/1:100:69,31:69:2480:31:1112:-70.2837,0,-193.345	0/1:151:89,62:89:3183:62:2211:-153.708,0,-241.17	0/0:160:160,0:160:5706:0:0:0,-48.1648,-513.636	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:112:67,45:67:2397:45:1607:-111.201,0,-182.26	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.866	0/1:30:22,8:22:788:8:288:-17.2365,0,-62.2092	0/0:161:161,0:161:5750:0:0:0,-48.4658,-517.6	0/1:35:18,17:18:648:17:608:-44.516,0,-48.1125	0/0:162:161,1:161:5746:1:36:0,-45.1686,-513.621	0/0:224:224,0:224:8025:0:0:0,-67.4307,-722.117	0/1:108:50,58:50:1766:58:2058:-152.976,0,-126.692	0/0:113:113,0:113:4059:0:0:0,-34.0164,-365.45	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:142:88,54:88:3130:54:1944:-132.477,0,-239.166	0/1:190:123,67:123:4395:67:2366:-155.887,0,-338.509	0/0:277:277,0:277:9917:0:0:0,-83.3853,-892.428	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.022	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.085	0/1:66:42,24:42:1500:24:860:-57.8539,0,-115.337	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.554	0/1:39:20,19:20:720:19:671:-48.9654,0,-53.3886	0/1:66:42,23:42:1504:23:816:-53.8322,0,-115.725	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.605	0/1:31:15,16:15:536:16:576:-42.8431,0,-39.2429	0/1:51:17,34:17:612:34:1216:-94.3848,0,-40.0517	0/1:41:8,33:8:288:33:1180:-94.1611,0,-13.9252	0/0:132:132,0:132:4736:0:0:0,-39.736,-426.208	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.278
chr09	22583947	.	T	C	48843.1	PASS	AB=0.533371;ABP=54.1703;AC=47;AF=0.252688;AN=186;AO=2841;CIGAR=1X;DP=11543;DPB=11543;DPRA=0.93336;EPP=6172.16;EPPR=18797.2;GTI=1;LEN=1;MEANALT=1.05455;MQM=59.6392;MQMR=59.9738;NS=93;NUMALT=1;ODDS=0.815493;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=101662;QR=311332;RO=8699;RPL=0;RPP=6172.16;RPPR=18805.9;RPR=2841;RUN=1;SAF=2841;SAP=6172.16;SAR=0;SRF=8698;SRP=18884;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/1:199:90,109:90:3220:109:3916:-292.686,0,-230.088	0/0:141:137,4:137:4904:4:144:0,-29.1316,-428.198	0/0:250:250,0:250:8944:0:0:0,-75.2575,-804.943	0/1:102:34,67:34:1220:67:2400:-185.483,0,-79.343	0/1:89:29,60:29:1025:60:2156:-167.459,0,-65.769	0/1:185:82,103:82:2944:103:3688:-276.418,0,-209.503	0/1:313:144,169:144:5168:169:6043:-449.697,0,-371.036	0/1:78:27,51:27:968:51:1812:-139.795,0,-63.8872	0/0:168:165,3:165:5905:3:108:0,-40.4979,-521.483	0/1:85:50,35:50:1796:35:1256:-87.7484,0,-136.335	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.217	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:134:134,0:134:4800:0:0:0,-40.338,-432.156	0/1:91:55,36:55:1972:36:1288:-88.7991,0,-150.361	0/1:65:39,26:39:1396:26:932:-64.6273,0,-106.372	0/1:115:58,57:58:2079:57:2040:-149.195,0,-152.761	0/1:96:48,48:48:1719:48:1724:-126.498,0,-125.158	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:217:217,0:217:7784:0:0:0,-65.3235,-700.588	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/1:140:37,103:37:1324:103:3696:-290.696,0,-77.3179	0/1:47:23,24:23:805:24:854:-63.0179,0,-58.6191	0/0:137:137,0:137:4893:0:0:0,-41.2411,-440.517	0/0:68:67,1:67:2392:1:36:0,-16.8718,-211.938	0/0:467:467,0:467:16745:0:0:0,-140.581,-1506.41	0/1:304:160,144:160:5752:144:5160:-373.016,0,-426.28	0/1:44:32,12:32:1152:12:428:-25.6116,0,-90.7448	0/0:268:268,0:268:9585:0:0:0,-80.676,-862.604	0/0:237:236,1:236:8460:1:36:0,-67.7458,-757.802	0/1:158:73,85:73:2612:85:3056:-227.613,0,-187.765	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:8:3,5:3:108:5:180:-14.1391,0,-7.66693	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:244:127,116:127:4547:116:4147:-299.884,0,-335.886	0/0:292:292,0:292:10445:0:0:0,-87.9008,-939.032	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:196:93,103:93:3344:103:3675:-271.941,0,-242.174	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:142:142,0:142:5073:0:0:0,-42.7463,-456.714	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/1:95:50,45:50:1792:45:1606:-116.217,0,-132.965	0/1:206:82,123:82:2928:123:4412:-334.979,0,-201.684	0/0:238:238,0:238:8485:0:0:0,-71.6451,-763.654	0/0:144:144,0:144:5152:0:0:0,-43.3483,-463.822	0/1:215:112,103:112:4008:103:3700:-267.281,0,-296.188	0/0:142:139,3:139:4980:3:108:0,-32.6711,-438.273	0/1:11:4,7:4:144:7:252:-19.7129,0,-10.0023	0/0:179:179,0:179:6404:0:0:0,-53.8844,-576.259	0/1:37:17,20:17:604:20:708:-52.9075,0,-43.5525	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	0/0:161:161,0:161:5749:0:0:0,-48.4658,-517.526	0/1:57:18,39:18:648:39:1396:-108.768,0,-41.4932	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/1:23:16,7:16:549:7:248:-15.7405,0,-42.8088	0/1:80:30,50:30:1072:50:1780:-136.388,0,-72.7101	0/0:146:146,0:146:5240:0:0:0,-43.9504,-471.736	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:312:121,191:121:4332:191:6836:-521.253,0,-296.134	0/0:297:294,3:294:10521:3:104:0,-79.7088,-937.02	0/1:133:67,66:67:2373:66:2360:-172.611,0,-173.79	0/1:117:45,72:45:1597:72:2568:-196.131,0,-108.798	0/1:179:86,93:86:3072:93:3328:-245.844,0,-222.825	0/0:92:89,3:89:3192:3:104:0,-17.9929,-277.799	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/1:105:46,59:46:1644:59:2124:-159.806,0,-116.64	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/1:29:16,13:16:572:13:464:-33.3676,0,-43.0836	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/1:74:27,47:27:972:47:1684:-129.448,0,-65.5217	0/0:188:188,0:188:6744:0:0:0,-56.5936,-607.014	0/0:201:201,0:201:7204:0:0:0,-60.507,-648.414	0/1:190:78,112:78:2792:112:4006:-303.48,0,-194.325	0/0:199:197,2:197:7072:2:72:0,-53.0682,-629.701	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:184:96,88:96:3448:88:3148:-227.379,0,-255.138	0/1:134:72,62:72:2576:62:2212:-158.996,0,-191.752	0/0:258:258,0:258:9182:0:0:0,-77.6657,-826.356	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.105	0/0:89:89,0:89:3177:0:0:0,-26.7917,-286.153	0/1:132:66,66:66:2372:66:2358:-172.25,0,-174.002	0/0:170:170,0:170:6100:0:0:0,-51.1751,-549.099	0/1:51:30,21:30:1080:21:735:-51.0624,0,-82.1607	0/1:82:36,46:36:1274:46:1635:-122.71,0,-90.277	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:56:32,24:32:1135:24:860:-60.7295,0,-85.6004	0/1:125:70,55:70:2504:55:1971:-139.901,0,-187.984	0/1:62:23,39:23:813:39:1392:-106.903,0,-54.8252	0/0:65:65,0:65:2308:0:0:0,-19.5669,-207.981	0/0:122:122,0:122:4364:0:0:0,-36.7257,-392.935
chr09	22584058	.	GCTGG	ACTGG	34227.1	PASS	AB=0.48118;ABP=16.251;AC=49;AF=0.260638;AN=188;AO=2090;CIGAR=1X4M;DP=10237;DPB=10237.2;DPRA=0.897036;EPP=4541.39;EPPR=17574.6;GTI=3;LEN=1;MEANALT=1.52542;MQM=59.9383;MQMR=59.9681;NS=94;NUMALT=1;ODDS=1.38487;PAIRED=0;PAIREDR=0;PAO=3;PQA=108;PQR=0;PRO=0;QA=74801;QR=283679;RO=8092;RPL=2090;RPP=4541.39;RPPR=17574.6;RPR=0;RUN=1;SAF=0;SAP=4541.39;SAR=2090;SRF=0;SRP=17574.6;SRR=8092;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:133:133,0:133:4630:0:0:0,-40.037,-416.874	0/1:71:39,30:39:1345:30:1065:-75.0292,0,-100.216	0/0:254:252,0:252:8895:0:0:0,-75.8596,-800.19	0/0:241:241,0:241:8446:0:0:0,-72.5482,-760.162	0/1:82:56,25:56:1925:25:896:-56.2172,0,-148.779	0/1:33:25,8:25:862:8:288:-16.3252,0,-67.9595	0/1:79:52,26:52:1827:26:936:-60.7169,0,-140.68	0/1:215:131,83:131:4500:83:2976:-203.292,0,-340.399	0/1:180:91,88:91:3193:88:3125:-227.232,0,-233.354	0/0:113:113,0:113:3972:0:0:0,-34.0164,-357.678	0/1:27:12,15:12:422:15:540:-40.8087,0,-30.1877	0/0:96:95,0:95:3320:0:0:0,-28.5978,-298.664	0/0:82:81,0:81:2842:0:0:0,-24.3834,-255.17	0/0:39:39,0:39:1356:0:0:0,-11.7402,-122.336	0/1:96:47,48:47:1656:48:1720:-126.128,0,-120.37	0/1:65:22,43:22:788:43:1544:-119.686,0,-51.6781	0/1:29:14,15:14:483:15:540:-40.2067,0,-35.0678	0/1:39:26,13:26:909:13:468:-30.7195,0,-70.3846	0/0:34:29,2:29:1008:2:72:0,-2.85503,-84.1947	0/0:227:226,0:226:7961:0:0:0,-68.0328,-716.167	0/0:167:167,0:167:5793:0:0:0,-50.272,-521.501	0/1:252:79,172:79:2759:172:6148:-477.231,0,-172.633	0/1:134:67,67:67:2366:67:2408:-176.636,0,-172.855	0/0:91:90,0:90:3156:0:0:0,-27.0927,-283.909	0/0:158:156,2:156:5460:2:72:0,-40.726,-484.672	0/0:307:303,1:303:10617:1:36:0,-88.2747,-951.784	0/1:243:152,87:152:5378:87:3109:-207.73,0,-411.854	0/1:41:24,17:24:851:17:612:-43.0712,0,-64.5678	0/0:539:537,0:537:18906:0:0:0,-161.653,-1700.78	0/0:169:168,1:168:5895:1:36:0,-47.2758,-527.07	0/1:93:38,55:38:1346:55:1961:-148.768,0,-93.4432	0/0:12:12,0:12:404:0:0:0,-3.61236,-36.6825	0/1:29:21,8:21:724:8:273:-16.1703,0,-56.7487	0/1:4:3,1:3:101:1:36:-2.39415,0,-8.21961	0/0:4:4,0:4:141:0:0:0,-1.20412,-13.0369	0/1:27:21,6:21:714:6:216:-11.6627,0,-56.4466	0/1:205:119,84:119:4201:84:3016:-210.201,0,-316.806	0/0:173:173,0:173:6095:0:0:0,-52.0782,-548.66	0/0:27:26,0:26:916:0:0:0,-7.82678,-82.3967	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:99:46,53:46:1630:53:1892:-140.756,0,-117.187	0/0:23:23,0:23:810:0:0:0,-6.92369,-73.2206	0/0:192:189,0:189:6559:0:0:0,-56.8947,-590.049	0/0:66:66,0:66:2302:0:0:0,-19.868,-207.441	0/0:72:72,0:72:2536:0:0:0,-21.6742,-228.301	0/1:168:106,61:106:3723:61:2169:-144.839,0,-284.645	0/1:199:113,85:113:3911:85:3048:-214.704,0,-292.345	0/0:298:295,2:295:10221:2:72:0,-82.929,-913.018	0/0:136:136,0:136:4799:0:0:0,-40.9401,-432.072	0/1:81:28,49:28:980:49:1749:-134.14,0,-64.9731	0/0:124:124,0:124:4363:0:0:0,-37.3277,-392.851	0/1:5:3,2:3:107:2:72:-5.33157,0,-8.47702	0/0:197:197,0:197:6952:0:0:0,-59.3029,-625.759	0/1:84:32,51:32:1120:51:1824:-139.04,0,-75.7613	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:148:147,1:147:5178:1:36:0,-40.9542,-462.569	0/1:40:15,25:15:507:25:896:-68.9052,0,-33.9085	0/0:15:15,0:15:522:0:0:0,-4.51545,-47.3083	0/1:9:7,2:7:235:2:72:-4.12745,0,-18.7688	0/1:70:42,28:42:1457:28:1008:-69.9643,0,-110.351	0/0:80:80,0:80:2834:0:0:0,-24.0824,-255.3	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:212:112,100:112:3935:100:3565:-257.239,0,-290.53	0/0:219:213,6:213:7511:6:216:0,-46.1351,-656.24	0/1:59:37,22:37:1291:22:788:-53.484,0,-98.7293	0/1:109:59,47:59:2062:47:1673:-118.586,0,-153.581	0/1:186:89,97:89:3125:97:3476:-256.7,0,-225.082	0/0:172:171,1:171:6002:1:36:0,-48.1789,-536.697	0/0:17:17,0:17:601:0:0:0,-5.11751,-54.4194	0/1:94:58,36:58:2012:36:1288:-87.9234,0,-153.054	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.02	0/1:27:18,9:18:631:9:324:-21.378,0,-48.9881	0/0:107:107,0:107:3702:0:0:0,-32.2102,-333.389	0/1:121:50,70:50:1742:70:2512:-189.863,0,-120.594	0/0:136:134,1:134:4682:1:36:0,-37.4006,-417.951	0/0:193:192,0:192:6743:0:0:0,-57.7978,-606.591	0/1:184:85,96:85:2951:96:3436:-254.605,0,-210.982	0/0:103:103,0:103:3644:0:0:0,-31.0061,-328.168	0/1:9:3,6:3:107:6:216:-17.0812,0,-7.2729	0/1:136:68,67:68:2388:67:2412:-176.337,0,-174.18	0/1:145:56,88:56:1974:88:3141:-239.206,0,-134.226	0/0:217:213,2:213:7500:2:72:0,-58.2446,-668.22	0/0:46:45,0:45:1591:0:0:0,-13.5463,-143.12	0/0:69:69,0:69:2406:0:0:0,-20.7711,-216.796	0/1:58:28,30:28:987:30:1076:-79.6931,0,-71.6837	0/0:121:120,0:120:4247:0:0:0,-36.1236,-382.051	0/1:22:9,13:9:308:13:468:-35.837,0,-21.4273	0/1:63:32,31:32:1118:31:1107:-80.9455,0,-81.9614	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.059	0/1:37:17,20:17:588:20:716:-53.6296,0,-42.1054	0/1:48:19,29:19:670:29:1044:-79.8254,0,-46.176	0/1:71:25,46:25:877:46:1656:-127.955,0,-57.8742	0/0:114:114,0:114:3977:0:0:0,-34.3174,-358.125	0/0:92:92,0:92:3229:0:0:0,-27.6948,-290.835
chr09	22591633	.	G	A	9266.68	PASS	AB=0.343704;ABP=432.682;AC=40;AF=0.215054;AN=186;AO=714;CIGAR=1X;DP=5995;DPB=5995;DPRA=0.634099;EPP=1544.77;EPPR=192.799;GTI=9;LEN=1;MEANALT=1.02128;MQM=59.9692;MQMR=59.9985;NS=93;NUMALT=1;ODDS=0.36779;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25444;QR=187510;RO=5275;RPL=1;RPP=1544.77;RPPR=192.799;RPR=713;RUN=1;SAF=0;SAP=1553.44;SAR=714;SRF=0;SRP=11457.5;SRR=5275;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:55:49,6:49:1760:6:216:-3.23386,0,-142.127	0/0:72:72,0:72:2551:0:0:0,-21.6742,-229.841	0/0:149:149,0:149:5331:0:0:0,-44.8535,-479.923	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:78:36,41:36:1273:41:1451:-107.346,0,-91.332	0/1:128:72,56:72:2584:56:1988:-140.661,0,-194.269	0/1:64:35,29:35:1252:29:1031:-73.8367,0,-93.7192	0/0:98:97,0:97:3467:0:0:0,-29.1999,-312.03	0/0:40:38,2:38:1345:2:72:0,-5.20448,-114.511	0/0:76:76,0:76:2677:0:0:0,-22.8783,-241.176	0/0:64:64,0:64:2268:0:0:0,-19.2659,-204.381	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.647	0/1:45:39,6:39:1381:6:212:-5.87845,0,-111.04	0/1:18:15,3:15:521:3:108:-4.65663,0,-41.7978	0/1:32:24,8:24:846:8:284:-16.2704,0,-66.8248	0/1:43:39,4:39:1400:4:144:-0.369328,0,-113.355	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:168:167,0:167:5967:0:0:0,-50.272,-536.778	0/0:120:119,0:119:4216:0:0:0,-35.8226,-379.379	0/1:39:12,27:12:428:27:947:-73.8036,0,-27.1186	0/1:52:33,19:33:1180:19:680:-45.8756,0,-90.8545	0/0:79:79,0:79:2812:0:0:0,-23.7814,-253.318	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:78:77,0:77:2696:0:0:0,-23.1793,-242.671	0/0:94:86,8:86:3035:8:275:0,-3.21334,-248.299	0/0:27:25,2:25:885:2:72:0,-1.29109,-73.1298	0/0:149:149,0:149:5307:0:0:0,-44.8535,-477.767	0/0:112:112,0:112:3977:0:0:0,-33.7154,-358.122	0/1:86:71,15:71:2544:15:540:-23.048,0,-203.322	0/0:32:32,0:32:1115:0:0:0,-9.63296,-100.654	0/1:21:18,3:18:648:3:108:-3.75354,0,-52.3303	.:.:.:.:.:.:.:.	0/0:78:78,0:78:2753:0:0:0,-23.4803,-248.01	0/0:19:18,1:18:644:1:36:0,-2.12129,-54.6923	0/1:143:106,37:106:3748:37:1328:-76.7749,0,-294.472	0/0:73:73,0:73:2591:0:0:0,-21.9752,-233.439	0/0:61:60,0:60:2152:0:0:0,-18.0618,-193.587	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/1:100:50,50:50:1792:50:1771:-129.568,0,-131.459	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:78:78,0:78:2775:0:0:0,-23.4803,-249.991	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:59:59,0:59:2078:0:0:0,-17.7608,-187.287	0/1:88:57,31:57:2044:31:1112:-73.9007,0,-157.741	0/1:39:12,27:12:428:27:957:-74.7045,0,-27.1186	0/0:85:83,2:83:2959:2:72:0,-18.7508,-259.707	0/0:90:90,0:90:3182:0:0:0,-27.0927,-286.603	0/1:72:31,41:31:1108:41:1472:-111.102,0,-78.3568	0/0:145:145,0:145:5125:0:0:0,-43.6493,-461.396	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:79:79,0:79:2831:0:0:0,-23.7814,-255.028	0/1:21:12,9:12:428:9:324:-23.1842,0,-32.5372	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	0/0:94:94,0:94:3335:0:0:0,-28.2968,-300.369	0/1:24:10,14:10:352:14:500:-38.1115,0,-24.7935	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:32:19,13:19:680:13:464:-32.4645,0,-51.8962	0/0:95:95,0:95:3339:0:0:0,-28.5978,-300.727	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:110:83,27:83:2960:27:968:-54.3241,0,-233.521	0/0:192:192,0:192:6812:0:0:0,-57.7978,-613.154	0/1:50:39,11:39:1400:11:396:-20.9312,0,-111.248	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:93:73,20:73:2607:20:720:-37.133,0,-206.882	0/0:96:96,0:96:3411:0:0:0,-28.8989,-307.206	0/0:42:41,1:41:1468:1:36:0,-9.04498,-128.818	0/1:35:17,18:17:600:18:644:-47.7545,0,-43.7931	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.51	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	0/0:27:27,0:27:942:0:0:0,-8.12781,-85.0923	0/1:49:23,26:23:807:26:936:-69.809,0,-58.1987	0/0:114:114,0:114:4049:0:0:0,-34.3174,-364.599	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.545	0/1:78:47,31:47:1672:31:1112:-76.911,0,-127.287	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/1:10:7,3:7:230:3:108:-7.06487,0,-18.0109	0/1:50:37,13:37:1328:13:468:-27.4081,0,-104.771	0/1:69:38,31:38:1352:31:1084:-77.0951,0,-101.209	0/0:141:141,0:141:5027:0:0:0,-42.4452,-452.578	0/0:77:77,0:77:2746:0:0:0,-23.1793,-247.381	0/0:88:88,0:88:3128:0:0:0,-26.4906,-281.745	0/1:32:28,4:28:983:4:144:-3.68066,0,-79.1496	0/0:151:151,0:151:5363:0:0:0,-45.4555,-482.804	0/1:37:32,5:32:1129:5:162:-3.76073,0,-90.7782	0/1:51:42,9:42:1483:9:315:-13.3347,0,-118.411	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.665	0/0:25:23,2:23:810:2:72:0,-0.689027,-66.3823	0/1:48:39,9:39:1369:9:315:-14.2187,0,-109.057	0/1:38:28,10:28:1004:10:360:-21.3052,0,-79.2367	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.29	0/0:78:78,0:78:2760:0:0:0,-23.4803,-248.641
chr09	22611834	.	A	T	83971.8	PASS	AB=0.477954;ABP=12.5847;AC=136;AF=0.723404;AN=188;AO=3980;CIGAR=1X;DP=5188;DPB=5188;DPRA=13.1234;EPP=8645.47;EPPR=2608.78;GTI=3;LEN=1;MEANALT=1.06593;MQM=59.6754;MQMR=59.935;NS=94;NUMALT=1;ODDS=0.540627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141181;QR=42766;RO=1200;RPL=9;RPP=8567.47;RPPR=2608.78;RPR=3971;RUN=1;SAF=9;SAP=8567.47;SAR=3971;SRF=0;SRP=2608.78;SRR=1200;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:2,21:2:72:21:748:-60.8004,-0.0869676,0	0/1:76:40,35:40:1432:35:1256:-90.4001,0,-106.241	1/1:63:0,63:0:0:63:2240:-201.758,-18.9649,0	1/1:96:0,96:0:0:96:3421:-308.096,-28.8989,0	0/1:42:14,28:14:504:28:1008:-78.3885,0,-33.0548	0/1:28:10,18:10:360:18:640:-49.4986,0,-24.3155	0/1:88:48,40:48:1720:40:1420:-101.6,0,-128.587	0/1:97:44,53:44:1580:53:1884:-140.582,0,-113.292	0/1:63:36,27:36:1281:27:951:-66.9394,0,-96.6218	1/1:86:0,86:0:0:86:3075:-276.972,-25.8886,0	0/1:29:13,16:13:464:16:572:-43.0836,0,-33.3676	1/1:46:0,46:0:0:46:1581:-142.557,-13.8474,0	1/1:35:0,35:0:0:35:1243:-111.975,-10.5361,0	1/1:52:0,52:0:0:52:1848:-166.587,-15.6536,0	0/1:45:28,17:28:995:17:591:-39.9663,0,-76.3095	0/1:40:21,19:21:752:19:667:-48.3111,0,-55.9651	0/1:27:13,14:13:464:14:482:-35.5782,0,-33.7785	0/1:36:20,16:20:712:16:564:-40.2532,0,-53.5696	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:80:0,80:0:0:80:2843:-256.058,-24.0824,0	1/1:117:0,115:0:0:115:4063:-365.494,-34.6185,0	0/1:66:43,23:43:1536:23:820:-54.2168,0,-118.657	0/1:33:16,17:16:557:17:608:-45.1157,0,-40.5216	1/1:62:0,62:0:0:62:2204:-198.547,-18.6639,0	1/1:35:0,35:0:0:35:1231:-111.047,-10.5361,0	1/1:162:0,162:0:0:162:5692:-511.438,-48.7669,0	0/1:139:68,71:68:2412:71:2507:-184.012,0,-175.491	0/1:23:11,12:11:396:12:432:-32.2929,0,-29.0544	1/1:144:0,144:0:0:144:5143:-463.009,-43.3483,0	1/1:81:0,81:0:0:81:2887:-260.037,-24.3834,0	0/1:80:40,40:40:1420:40:1428:-104.627,0,-104.015	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:116:56,58:56:2004:58:2064:-151.351,0,-145.952	1/1:97:0,96:0:0:96:3386:-304.584,-28.8989,0	1/1:50:0,49:0:0:49:1719:-154.616,-14.7505,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:71:33,38:33:1180:38:1338:-99.3407,0,-85.1349	1/1:24:0,24:0:0:24:847:-76.5441,-7.22472,0	1/1:66:0,66:0:0:66:2317:-208.782,-19.868,0	1/1:46:1,45:1:36:45:1612:-141.752,-10.2491,0	1/1:36:0,36:0:0:36:1266:-114.194,-10.8371,0	0/1:55:24,31:24:860:31:1095:-82.2997,0,-61.1652	0/1:71:43,28:43:1540:28:982:-67.3175,0,-117.52	1/1:80:0,80:0:0:80:2846:-256.369,-24.0824,0	1/1:67:0,67:0:0:67:2372:-213.739,-20.169,0	0/1:73:48,25:48:1724:25:896:-58.9828,0,-133.47	1/1:87:0,86:0:0:86:3082:-277.24,-25.8886,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:84:0,84:0:0:84:2989:-269.191,-25.2865,0	0/1:40:26,14:26:895:14:492:-32.5711,0,-68.8186	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	1/1:66:0,66:0:0:66:2328:-209.607,-19.868,0	0/1:37:13,24:13:468:24:849:-65.5897,0,-31.3215	1/1:1:0,1:0:0:1:25:-2.49978,-0.30103,0	0/1:15:8,7:8:269:7:252:-18.5135,0,-20.0207	0/1:34:15,19:15:531:19:680:-51.2941,0,-37.8869	1/1:79:0,79:0:0:79:2828:-254.752,-23.7814,0	0/1:6:2,4:2:68:4:140:-11.1384,0,-4.65153	0/1:113:63,50:63:2256:50:1784:-126.821,0,-169.286	1/1:108:1,107:1:36:107:3782:-336.893,-28.913,0	0/1:34:14,20:14:496:20:707:-53.7154,0,-34.731	0/1:40:22,18:22:784:18:644:-46.2494,0,-58.8427	0/1:97:55,42:55:1968:42:1492:-105.364,0,-148.195	1/1:72:1,71:1:32:71:2536:-225.284,-18.4748,0	1/1:20:0,20:0:0:20:720:-65.1242,-6.0206,0	0/1:51:19,32:19:680:32:1139:-87.4495,0,-46.1766	1/1:63:0,63:0:0:63:2256:-203.299,-18.9649,0	0/1:13:2,11:2:72:11:380:-30.618,0,-2.92333	1/1:53:0,53:0:0:53:1895:-170.805,-15.9546,0	0/1:51:30,21:30:1068:21:748:-52.2928,0,-81.0795	1/1:83:0,83:0:0:83:2917:-262.744,-24.9855,0	1/1:77:1,76:1:36:76:2708:-240.285,-19.581,0	0/1:55:31,24:31:1104:24:837:-58.966,0,-83.114	1/1:65:0,65:0:0:65:2301:-207.144,-19.567,0	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:58:30,28:30:1076:28:1008:-73.5766,0,-79.6931	0/1:53:28,25:28:977:25:869:-62.569,0,-72.2858	1/1:107:0,107:0:0:107:3832:-344.953,-32.2102,0	1/1:66:0,66:0:0:66:2303:-207.515,-19.868,0	1/1:28:0,28:0:0:28:1008:-91.0317,-8.42884,0	0/1:50:25,25:25:888:25:896:-65.9089,0,-65.1875	1/1:76:0,76:0:0:76:2670:-240.539,-22.8783,0	0/1:35:17,18:17:600:18:640:-47.3233,0,-43.7931	0/1:39:21,18:21:752:18:636:-45.8164,0,-56.2661	1/1:45:0,45:0:0:45:1596:-143.877,-13.5464,0	0/1:21:10,11:10:360:11:383:-28.4816,0,-26.4227	0/1:61:36,25:36:1284:25:876:-60.7078,0,-97.5006	0/1:40:26,14:26:917:14:500:-33.295,0,-70.8034	1/1:68:0,68:0:0:68:2424:-218.394,-20.47,0	1/1:64:0,64:0:0:64:2272:-204.73,-19.2659,0
chr09	22632406	.	A	G	23255	PASS	AB=0.610683;ABP=224.128;AC=49;AF=0.263441;AN=186;AO=1330;CIGAR=1X;DP=4172;DPB=4172;DPRA=1.22181;EPP=2891.07;EPPR=6042.56;GTI=3;LEN=1;MEANALT=1.01818;MQM=59.9774;MQMR=59.9743;NS=93;NUMALT=1;ODDS=0.352657;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47450;QR=101711;RO=2841;RPL=0;RPP=2891.07;RPPR=6042.56;RPR=1330;RUN=1;SAF=1330;SAP=2891.07;SAR=0;SRF=2841;SRP=6172.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:67:30,37:30:1080:37:1323:-99.2029,0,-77.3442	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:67:67,0:67:2389:0:0:0,-20.169,-215.266	0/1:8:2,6:2:72:6:201:-16.0088,0,-4.42848	0/1:23:7,16:7:248:16:568:-44.5282,0,-15.7405	0/1:54:25,29:25:896:29:1040:-77.6587,0,-64.7047	0/1:70:18,52:18:648:52:1829:-143.814,0,-37.5798	0/1:15:6,9:6:216:9:309:-23.6253,0,-15.2751	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/1:44:18,26:18:648:26:936:-71.3141,0,-45.4066	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:38:15,23:15:540:23:828:-63.405,0,-37.4974	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	0/1:54:24,30:24:864:30:1080:-81.2576,0,-61.7911	0/1:34:13,21:13:468:21:752:-57.7712,0,-32.2246	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.844	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	1/1:42:3,39:3:108:39:1400:-116.224,-2.56809,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:47:45,2:45:1605:2:72:0,-7.31169,-137.901	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:112:32,80:32:1148:80:2843:-222.392,0,-69.9145	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/0:53:52,1:52:1864:1:36:0,-12.3563,-164.441	0/0:59:58,1:58:2058:1:36:0,-14.1625,-181.889	0/1:27:7,20:7:252:20:720:-57.001,0,-14.9011	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:136:52,84:52:1868:84:2989:-228.301,0,-127.459	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	.:.:.:.:.:.:.:.	0/1:44:21,23:21:756:23:820:-60.8772,0,-55.1219	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:42:9,33:9:324:33:1184:-94.2251,0,-16.8626	0/1:35:12,23:12:432:23:828:-64.3081,0,-28.6851	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:160:58,102:58:2084:102:3634:-279.098,0,-139.665	0/0:41:41,0:41:1467:0:0:0,-12.3422,-132.325	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:36:12,24:12:432:24:864:-67.2455,0,-28.3841	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:286:125,161:125:4476:161:5697:-426.707,0,-316.915	0/0:55:53,2:53:1870:2:72:0,-9.71993,-161.739	0/1:57:19,38:19:676:38:1360:-105.542,0,-44.0093	0/1:29:5,24:5:180:24:860:-68.992,0,-7.82219	0/1:61:30,31:30:1080:31:1108:-81.6682,0,-79.1504	0/0:93:89,4:89:3147:4:144:0,-14.6822,-270.009	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.492	0/1:35:12,23:12:428:23:817:-63.3147,0,-28.3228	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:37:15,22:15:540:22:788:-60.1067,0,-37.7984	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:109:109,0:109:3871:0:0:0,-32.8123,-348.582	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/0:131:128,3:128:4573:3:108:0,-29.3598,-401.659	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:72:27,45:27:964:45:1616:-124.056,0,-65.4027	0/1:53:22,31:22:780:31:1088:-82.2719,0,-54.5684	0/0:56:55,1:55:1980:1:36:0,-13.2594,-174.876	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:48:22,26:22:792:26:936:-70.11,0,-57.1562	0/0:44:42,1:42:1512:1:36:0,-9.70584,-132.776	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:55:28,27:28:993:27:968:-70.8807,0,-73.1259	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:41:14,27:14:504:27:964:-74.734,0,-33.3559	0/1:77:28,49:28:1004:49:1752:-134.785,0,-67.4966	0/1:39:11,28:11:396:28:1004:-78.9357,0,-24.2426	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132
chr09	22632428	.	T	C	55917.6	PASS	AB=0.37936;ABP=267.597;AC=138;AF=0.741935;AN=186;AO=2777;CIGAR=1X;DP=4102;DPB=4102;DPRA=7.42029;EPP=6024.51;EPPR=2873.7;GTI=5;LEN=1;MEANALT=1.03261;MQM=59.9892;MQMR=59.9773;NS=93;NUMALT=1;ODDS=1.33876;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98074;QR=46983;RO=1322;RPL=2776;RPP=6024.51;RPPR=2873.7;RPR=1;RUN=1;SAF=2777;SAP=6033.19;SAR=0;SRF=1322;SRP=2873.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:67:38,29:38:1318:29:1044:-74.1058,0,-98.7461	1/1:36:0,36:0:0:36:1276:-115.143,-10.8371,0	1/1:65:0,65:0:0:65:2314:-208.519,-19.567,0	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:23:16,7:16:576:7:243:-15.2838,0,-45.2513	0/1:53:28,25:28:995:25:887:-64.1935,0,-73.9094	0/1:69:50,18:50:1783:18:648:-37.964,0,-140.069	0/1:14:9,5:9:309:5:180:-12.3376,0,-23.9263	1/1:83:0,83:0:0:83:2927:-263.665,-24.9855,0	0/1:44:27,17:27:964:17:603:-41.3542,0,-73.8315	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	1/1:55:0,55:0:0:55:1945:-175.324,-16.5567,0	0/1:39:24,15:24:840:15:540:-37.1964,0,-64.1753	0/1:29:16,13:16:554:13:451:-32.1899,0,-41.455	0/1:51:30,21:30:1072:21:731:-50.7579,0,-81.4399	0/1:34:21,13:21:739:13:459:-31.4091,0,-56.5974	1/1:11:0,11:0:0:11:373:-33.8924,-3.31133,0	1/1:44:1,43:1:36:43:1531:-134.484,-9.64705,0	1/1:51:0,51:0:0:51:1779:-160.387,-15.3525,0	0/1:42:38,4:38:1368:4:144:-0.670358,0,-110.778	0/1:5:2,3:2:72:3:99:-7.73143,0,-5.33157	1/1:45:2,43:2:72:43:1544:-132.416,-6.70963,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:96:0,96:0:0:96:3407:-306.844,-28.8989,0	0/1:110:79,31:79:2828:31:1079:-64.3016,0,-221.646	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	1/1:47:1,46:1:36:46:1648:-145.01,-10.5501,0	1/1:58:1,57:1:36:57:2040:-180.274,-13.8615,0	0/1:27:20,7:20:712:7:237:-13.5312,0,-56.2788	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:133:82,51:82:2880:51:1795:-121.792,0,-219.398	1/1:55:0,55:0:0:55:1964:-177.035,-16.5567,0	1/1:27:0,27:0:0:27:945:-85.3622,-8.12781,0	.:.:.:.:.:.:.:.	0/1:46:25,21:25:874:21:756:-54.5198,0,-65.1278	1/1:10:0,10:0:0:10:336:-30.5632,-3.0103,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:25:0,25:0:0:25:878:-79.3359,-7.52575,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:41:33,8:33:1175:8:279:-13.1053,0,-93.7147	0/1:35:23,12:23:820:12:423:-27.869,0,-63.5865	1/1:35:0,35:0:0:35:1245:-112.353,-10.5361,0	1/1:48:0,48:0:0:48:1673:-150.852,-14.4494,0	0/1:158:101,57:101:3591:57:1990:-131.808,0,-275.833	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:50:0,49:0:0:49:1675:-150.776,-14.7505,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:51:0,51:0:0:51:1772:-159.758,-15.3525,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/1:36:24,12:24:860:12:432:-28.3841,0,-66.8848	1/1:84:1,83:1:36:83:2937:-260.965,-21.6882,0	0/1:9:7,2:7:243:2:72:-4.12745,0,-19.4982	0/1:283:159,124:159:5668:124:4382:-309.362,0,-424.422	1/1:55:2,53:2:72:53:1848:-159.758,-9.71993,0	0/1:57:38,19:38:1352:19:684:-44.7316,0,-104.822	0/1:27:22,5:22:788:5:180:-8.42425,0,-63.117	0/1:60:32,28:32:1148:28:992:-71.5326,0,-85.568	1/1:92:4,88:4:144:88:3105:-266.363,-14.3811,0	1/1:9:0,9:0:0:9:300:-27.3216,-2.70927,0	0/1:34:23,11:23:828:11:387:-24.9309,0,-64.6091	1/1:65:0,65:0:0:65:2265:-204.11,-19.567,0	0/1:32:15,17:15:528:17:604:-45.0576,0,-38.2184	1/1:57:0,57:0:0:57:2001:-180.36,-17.1587,0	0/1:37:22,15:22:780:15:519:-35.8986,0,-59.3849	1/1:29:0,29:0:0:29:1009:-91.1176,-8.72987,0	1/1:107:0,107:0:0:107:3802:-342.378,-32.2102,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:130:3,127:3:104:127:4463:-392.142,-29.4311,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:71:45,26:45:1612:26:932:-62.8257,0,-123.997	0/1:54:31,23:31:1095:23:794:-55.5185,0,-82.6035	1/1:56:1,54:1:36:54:1904:-168.104,-13.2483,0	1/1:50:0,50:0:0:50:1773:-159.851,-15.0515,0	1/1:28:1,27:1:36:27:944:-81.6731,-4.83057,0	0/1:49:27,22:27:959:22:792:-56.8552,0,-71.8749	1/1:44:1,43:1:36:43:1501:-131.78,-9.64705,0	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/1:53:27,26:27:960:26:927:-67.7928,0,-70.7617	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:40:26,14:26:927:14:500:-33.295,0,-71.7062	0/1:76:50,26:50:1745:26:913:-59.6057,0,-134.454	0/1:38:27,11:27:968:11:392:-24.1809,0,-75.9982	1/1:101:0,101:0:0:101:3592:-323.486,-30.404,0	1/1:28:0,28:0:0:28:980:-88.5102,-8.42884,0
chr09	22689942	.	T	G	53481.2	PASS	AB=0.507841;ABP=5.49618;AC=48;AF=0.255319;AN=188;AO=2372;CIGAR=1X;DP=11459;DPB=11459;DPRA=0.804314;EPP=3.30691;EPPR=27.6552;GTI=2;LEN=1;MEANALT=1.09091;MQM=59.9979;MQMR=59.991;NS=94;NUMALT=1;ODDS=6.74893;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84048;QR=323818;RO=9079;RPL=2369;RPP=5127.72;RPPR=19665.7;RPR=3;RUN=1;SAF=1174;SAP=3.53761;SAR=1198;SRF=4375;SRP=28.8989;SRR=4704;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.904	0/1:108:40,68:40:1436:68:2420:-185.545,0,-97.0264	0/0:68:68,0:68:2420:0:0:0,-20.47,-218.057	0/0:251:251,0:251:8932:0:0:0,-75.5585,-803.867	0/1:111:49,62:49:1756:62:2194:-164.311,0,-124.91	0/1:36:14,22:14:504:22:784:-60.0468,0,-34.861	0/1:194:112,82:112:3998:82:2889:-201.848,0,-301.61	0/0:102:101,1:101:3607:1:36:0,-27.1068,-321.238	0/1:84:44,40:44:1568:40:1392:-100.288,0,-116.125	0/0:159:159,0:159:5663:0:0:0,-47.8638,-509.793	0/1:145:76,69:76:2723:69:2432:-175.485,0,-201.663	0/0:65:65,0:65:2313:0:0:0,-19.5669,-207.802	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.832	0/0:144:142,1:142:5064:1:36:0,-39.8088,-452.309	0/1:108:55,53:55:1960:53:1879:-136.877,0,-144.164	0/1:96:50,46:50:1792:46:1648:-119.71,0,-132.664	0/1:54:21,33:21:744:33:1171:-89.4411,0,-51.0287	0/1:36:18,17:18:644:17:608:-44.194,0,-47.4326	0/0:38:38,0:38:1336:0:0:0,-11.4391,-120.537	0/0:308:308,0:308:10980:0:0:0,-92.7172,-988.098	0/0:207:207,0:207:7412:0:0:0,-62.3132,-667.126	0/1:72:14,58:14:504:58:2069:-164.805,0,-24.0239	0/1:87:39,48:39:1369:48:1689:-126.104,0,-97.3169	0/0:204:204,0:204:7304:0:0:0,-61.4101,-657.388	0/0:143:143,0:143:5128:0:0:0,-43.0473,-461.661	0/0:296:296,0:296:10510:0:0:0,-89.1049,-945.82	0/1:296:150,146:150:5364:146:5176:-376.881,0,-393.788	0/1:83:41,42:41:1476:42:1504:-110.669,0,-108.151	0/0:350:350,0:350:12489:0:0:0,-105.36,-1123.85	0/0:127:126,1:126:4492:1:36:0,-34.6325,-400.853	0/1:121:64,57:64:2276:57:2011:-144.837,0,-168.675	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/1:23:17,6:17:608:6:212:-12.5011,0,-48.1283	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:351:184,167:184:6575:167:5937:-428.781,0,-486.171	0/0:116:116,0:116:4136:0:0:0,-34.9195,-372.426	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.5363	0/1:243:120,123:120:4300:123:4375:-320.776,0,-314.026	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/0:175:175,0:175:6248:0:0:0,-52.6802,-562.417	0/0:168:168,0:168:6005:0:0:0,-50.573,-540.554	0/0:135:135,0:135:4799:0:0:0,-40.639,-432.066	0/1:104:52,52:52:1828:52:1830:-133.672,0,-133.491	0/1:93:47,46:47:1688:46:1627:-118.722,0,-124.211	0/0:211:211,0:211:7519:0:0:0,-63.5173,-676.756	0/0:150:150,0:150:5339:0:0:0,-45.1545,-480.644	0/1:159:84,75:84:3008:75:2646:-190.521,0,-223.087	0/0:226:226,0:226:8099:0:0:0,-68.0328,-728.925	0/1:8:6,2:6:207:2:72:-4.42848,0,-16.5587	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.482	0/1:47:20,27:20:707:27:955:-72.1164,0,-49.8062	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:158:158,0:158:5651:0:0:0,-47.5627,-508.393	0/1:63:27,35:27:955:35:1239:-92.7901,0,-67.2414	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/1:92:44,48:44:1560:48:1682:-123.97,0,-112.997	0/0:169:169,0:169:5986:0:0:0,-50.8741,-538.85	0/1:11:6,5:6:216:5:172:-12.5066,0,-16.4792	0/1:125:58,67:58:2068:67:2387:-177.458,0,-148.762	0/0:222:221,1:221:7819:1:36:0,-63.2304,-700.145	0/1:82:38,44:38:1352:44:1563:-116.276,0,-97.2959	0/1:91:53,38:53:1864:38:1342:-93.6815,0,-140.643	0/1:230:111,119:111:3952:119:4220:-310.745,0,-286.634	0/0:133:133,0:133:4759:0:0:0,-40.037,-428.467	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/1:67:39,28:39:1380:28:1004:-70.5069,0,-104.33	0/0:138:137,0:137:4884:0:0:0,-41.2411,-439.352	0/1:34:8,26:8:288:26:909:-71.8884,0,-16.0324	0/0:71:70,0:70:2520:0:0:0,-21.0721,-226.691	0/1:55:28,27:28:1004:27:964:-70.5202,0,-74.1192	0/0:282:282,0:282:10084:0:0:0,-84.8905,-907.478	0/0:214:214,0:214:7656:0:0:0,-64.4204,-689.074	0/1:62:39,23:39:1366:23:807:-54.2861,0,-104.571	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:162:93,69:93:3328:69:2468:-173.607,0,-250.971	0/1:74:43,31:43:1516:31:1080:-75.2298,0,-114.457	0/0:381:379,2:379:13468:2:72:0,-107.856,-1205.08	0/0:174:172,1:172:6156:1:36:0,-48.8198,-550.561	0/1:116:54,62:54:1928:62:2185:-161.995,0,-138.877	0/1:168:89,79:89:3141:79:2806:-202.207,0,-232.342	0/0:285:284,1:284:10127:1:36:0,-82.1953,-907.766	0/1:49:23,26:23:820:26:921:-68.4563,0,-59.372	0/1:55:30,25:30:1076:25:883:-63.2308,0,-80.5962	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:99:38,60:38:1364:60:2136:-162.687,0,-93.2388	0/1:197:102,95:102:3648:95:3387:-245.743,0,-269.222	0/1:125:34,91:34:1220:91:3193:-249.965,0,-72.4781	0/0:131:131,0:131:4668:0:0:0,-39.4349,-420.284	0/0:215:214,0:214:7614:0:0:0,-64.4204,-684.94
chr09	22701838	.	A	G	61599.2	PASS	AB=0.468127;ABP=56.5796;AC=48;AF=0.255319;AN=188;AO=2868;CIGAR=1X;DP=14546;DPB=14546;DPRA=0.96095;EPP=6222.11;EPPR=25348.4;GTI=4;LEN=1;MEANALT=1.0303;MQM=59.9899;MQMR=59.9949;NS=94;NUMALT=1;ODDS=0.465418;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100292;QR=414428;RO=11676;RPL=1492;RPP=13.1984;RPPR=10.1548;RPR=1376;RUN=1;SAF=1491;SAP=12.8501;SAR=1377;SRF=5937;SRP=10.3014;SRR=5739;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:28,1:28:1004:1:36:0,-5.13159,-87.0776	0/1:204:117,87:117:4162:87:3094:-217.278,0,-313.354	0/0:258:257,1:257:9159:1:36:0,-74.0675,-820.687	0/0:306:306,0:306:10889:0:0:0,-92.1152,-979.916	0/1:78:43,35:43:1520:35:1238:-88.2425,0,-113.613	0/1:68:33,35:33:1176:35:1217:-89.3585,0,-85.6777	0/1:215:104,111:104:3650:111:3911:-287.465,0,-263.986	0/0:248:247,1:247:8795:1:36:0,-71.0572,-787.941	0/1:143:64,79:64:2245:79:2755:-205.142,0,-159.263	0/0:182:182,0:182:6436:0:0:0,-54.7875,-579.33	0/1:190:113,77:113:3996:77:2690:-185.149,0,-302.636	0/0:188:188,0:188:6647:0:0:0,-56.5936,-598.316	0/0:168:168,0:168:5962:0:0:0,-50.573,-536.69	0/0:255:254,1:254:8942:1:36:0,-73.1644,-801.179	0/1:148:78,70:78:2743:70:2468:-177.814,0,-202.56	0/1:118:68,50:68:2416:50:1751:-122.35,0,-182.173	0/1:211:121,90:121:4320:90:3085:-214.361,0,-325.457	0/1:148:69,79:69:2434:79:2773:-205.26,0,-174.747	0/0:141:141,0:141:5006:0:0:0,-42.4452,-450.691	0/0:223:223,0:223:7948:0:0:0,-67.1297,-715.346	0/0:209:209,0:209:7438:0:0:0,-62.9153,-669.467	0/1:51:15,36:15:531:36:1274:-99.609,0,-32.7694	0/1:82:47,35:47:1673:35:1245:-87.6683,0,-126.171	0/0:90:90,0:90:3166:0:0:0,-27.0927,-285.168	0/0:91:91,0:91:3202:0:0:0,-27.3937,-288.401	0/0:418:418,0:418:14876:0:0:0,-125.831,-1338.58	0/1:296:164,132:164:5819:132:4628:-327.583,0,-434.722	0/1:75:32,43:32:1131:43:1512:-113.796,0,-79.5205	0/0:286:286,0:286:10181:0:0:0,-86.0946,-916.221	0/0:161:161,0:161:5746:0:0:0,-48.4658,-517.257	0/1:158:88,69:88:3143:69:2409:-169.443,0,-235.474	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:17:11,6:11:396:6:208:-13.9416,0,-30.8652	0/1:4:1,3:1:36:3:99:-8.03246,0,-2.39415	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:402:198,204:198:7056:204:7133:-521.028,0,-514.088	0/0:130:130,0:130:4627:0:0:0,-39.1339,-416.596	0/0:224:224,0:224:7912:0:0:0,-67.4307,-712.115	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:199:107,92:107:3805:92:3239:-231.827,0,-282.743	0/0:106:106,0:106:3749:0:0:0,-31.9092,-337.612	0/0:166:166,0:166:5870:0:0:0,-49.971,-528.416	0/0:183:182,1:182:6426:1:36:0,-51.4902,-574.835	0/0:162:162,0:162:5748:0:0:0,-48.7669,-517.44	0/1:130:83,47:83:2976:47:1672:-111.633,0,-228.938	0/1:184:100,84:100:3571:84:2912:-206.925,0,-266.208	0/0:286:284,2:284:10088:2:61:0,-80.3013,-902.064	0/0:169:169,0:169:6024:0:0:0,-50.8741,-541.565	0/1:176:104,72:104:3694:72:2549:-176.677,0,-279.682	0/0:217:217,0:217:7762:0:0:0,-65.3235,-698.611	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:230:229,1:229:8176:1:27:0,-66.5371,-733.155	0/1:44:26,18:26:927:18:644:-45.0453,0,-70.502	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.5032	0/0:161:160,1:160:5678:1:32:0,-45.2665,-507.942	0/1:68:38,30:38:1345:30:1062:-75.4212,0,-100.878	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:95:48,47:48:1720:47:1597:-115.412,0,-126.488	0/0:299:296,3:296:10444:3:99:0,-80.7714,-930.652	0/1:6:4,2:4:140:2:63:-4.17697,0,-11.1384	0/1:174:88,86:88:3152:86:2986:-216.592,0,-231.524	0/0:237:236,1:236:8379:1:36:0,-67.7458,-750.521	0/1:102:69,33:69:2464:33:1180:-75.803,0,-191.309	0/1:91:57,34:57:2006:34:1205:-81.3615,0,-153.416	0/1:186:105,81:105:3729:81:2852:-200.928,0,-279.818	0/0:126:125,1:125:4434:1:36:0,-34.3315,-395.633	0/0:126:124,2:124:4360:2:68:0,-31.4721,-386.117	0/1:131:75,56:75:2676:56:1972:-138.318,0,-201.651	0/0:230:229,1:229:8081:1:36:0,-65.6386,-723.719	0/1:24:17,7:17:604:7:251:-15.7131,0,-47.4659	0/0:132:132,0:132:4665:0:0:0,-39.736,-420.014	0/1:134:78,56:78:2764:56:1936:-134.174,0,-208.663	0/0:223:223,0:223:7878:0:0:0,-67.1297,-709.055	0/0:272:271,1:271:9635:1:36:0,-78.2819,-863.508	0/1:133:77,56:77:2734:56:1935:-134.384,0,-206.266	0/0:183:180,3:180:6421:3:108:0,-45.0133,-567.903	0/1:14:2,12:2:72:12:419:-33.8283,0,-2.6223	0/1:181:99,82:99:3509:82:2869:-203.961,0,-261.535	0/1:135:63,72:63:2234:72:2537:-187.939,0,-160.684	0/0:355:354,1:354:12562:1:36:0,-103.267,-1126.82	0/0:211:211,0:211:7491:0:0:0,-63.5173,-674.238	0/1:146:76,70:76:2702:70:2414:-173.567,0,-199.473	0/1:204:102,102:102:3626:102:3553:-258.57,0,-265.136	0/0:289:286,3:286:10117:3:100:0,-77.6672,-901.14	0/1:113:58,55:58:2071:55:1908:-137.977,0,-152.642	0/1:156:77,79:77:2743:79:2724:-198.441,0,-200.152	0/0:130:130,0:130:4595:0:0:0,-39.1339,-413.718	0/1:161:87,73:87:3104:73:2521:-178.617,0,-231.063	0/1:270:143,127:143:5035:127:4381:-313.194,0,-372.017	0/1:163:60,103:60:2131:103:3634:-278.201,0,-142.99	0/0:98:98,0:98:3493:0:0:0,-29.5009,-314.58	0/0:253:252,1:252:8935:1:32:0,-72.9613,-800.942
chr09	22702384	.	G	T	22754	PASS	AB=0.470885;ABP=24.8851;AC=44;AF=0.234043;AN=188;AO=1414;CIGAR=1X;DP=7603;DPB=7603;DPRA=0.956111;EPP=3073.47;EPPR=13442.3;GTI=3;LEN=1;MEANALT=1;MQM=59.9958;MQMR=59.994;NS=94;NUMALT=1;ODDS=0.976774;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50543;QR=221324;RO=6189;RPL=0;RPP=3073.47;RPPR=13442.3;RPR=1414;RUN=1;SAF=1414;SAP=3073.47;SAR=0;SRF=6189;SRP=13442.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/1:42:30,12:30:1076:12:424:-25.8532,0,-84.5096	0/0:276:275,1:275:9856:1:36:0,-79.486,-883.383	0/0:192:192,0:192:6826:0:0:0,-57.7978,-614.41	0/1:61:37,24:37:1328:24:864:-59.7197,0,-101.459	0/1:40:22,18:22:788:18:640:-45.8881,0,-59.2036	0/1:58:38,20:38:1368:20:720:-47.669,0,-105.961	0/0:121:121,0:121:4328:0:0:0,-36.4246,-389.696	0/1:76:47,29:47:1692:29:1036:-70.6756,0,-129.689	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:26:9,17:9:324:17:608:-47.2252,0,-21.6791	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.621	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:69:34,35:34:1220:35:1260:-92.9344,0,-89.3357	0/1:47:19,28:19:680:28:994:-75.626,0,-47.3808	0/1:19:6,13:6:207:13:468:-36.7401,0,-13.2473	0/1:18:15,3:15:536:3:108:-4.65663,0,-43.1563	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:168:168,0:168:6016:0:0:0,-50.573,-541.545	0/0:133:133,0:133:4757:0:0:0,-40.037,-428.286	0/1:182:78,104:78:2784:104:3699:-278.326,0,-196.014	0/1:93:58,35:58:2068:35:1260:-85.7097,0,-158.395	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:221:221,0:221:7865:0:0:0,-66.5276,-707.882	0/1:157:82,75:82:2936:75:2673:-193.554,0,-217.213	0/1:26:8,18:8:288:18:626:-48.8363,0,-18.4406	0/0:265:265,0:265:9504:0:0:0,-79.7729,-855.315	0/0:91:89,2:89:3192:2:72:0,-20.557,-280.666	0/1:52:30,22:30:1053:22:784:-55.2304,0,-79.425	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:188:80,108:80:2852:108:3884:-293.159,0,-200.325	0/0:132:132,0:132:4728:0:0:0,-39.736,-425.679	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:98:57,41:57:2044:41:1456:-101.835,0,-154.731	0/0:33:33,0:33:1163:0:0:0,-9.93399,-104.976	0/0:179:179,0:179:6396:0:0:0,-53.8844,-575.73	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:73:45,28:45:1616:28:1008:-69.0612,0,-123.755	0/1:105:50,55:50:1796:55:1972:-146.147,0,-130.314	0/0:189:188,1:188:6740:1:32:0,-53.6954,-603.474	0/0:122:121,1:121:4295:1:36:0,-33.1274,-383.127	0/1:93:55,38:55:1976:38:1360:-94.7048,0,-150.119	0/0:101:101,0:101:3604:0:0:0,-30.404,-324.567	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:116:115,1:115:4109:1:36:0,-31.3212,-366.396	0/1:30:18,12:18:644:12:428:-29.8279,0,-49.2597	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:177:177,0:177:6325:0:0:0,-53.2823,-569.341	0/1:29:15,14:15:540:14:500:-36.6063,0,-40.2067	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:46:29,17:29:1040:17:608:-41.2046,0,-80.067	0/0:92:91,1:91:3255:1:36:0,-24.0965,-289.572	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:177:91,86:91:3245:86:3044:-220.907,0,-238.988	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/1:26:16,10:16:572:10:356:-24.5545,0,-43.9866	0/1:81:49,32:49:1725:32:1152:-79.6067,0,-131.149	0/1:121:58,63:58:2080:63:2264:-167.598,0,-151.046	0/0:203:203,0:203:7280:0:0:0,-61.1091,-655.25	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:41:17,24:17:612:24:856:-65.0189,0,-43.063	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:97:96,1:96:3440:1:36:0,-25.6016,-306.215	0/1:89:47,42:47:1692:42:1508:-109.223,0,-125.775	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/0:186:186,0:186:6660:0:0:0,-55.9916,-599.207	0/1:156:88,68:88:3140:68:2436:-172.535,0,-235.866	0/0:72:71,1:71:2539:1:21:0,-19.5742,-226.66	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:93:52,41:52:1864:41:1472:-104.78,0,-140.044	0/1:166:105,61:105:3756:61:2180:-146.491,0,-288.269	0/0:140:140,0:140:4989:0:0:0,-42.1442,-449.159	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:58:31,27:31:1108:27:972:-70.3382,0,-82.5713	0/1:33:12,21:12:428:21:739:-56.8984,0,-28.9248	0/0:107:103,4:103:3688:4:144:0,-18.8966,-318.809	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:60:26,34:26:932:34:1224:-92.4052,0,-66.1371	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.757	0/1:29:19,10:19:680:10:356:-23.6514,0,-52.7993	0/1:72:40,32:40:1436:32:1148:-81.9557,0,-107.864	0/1:73:23,50:23:828:50:1783:-138.777,0,-52.8689	0/0:151:149,2:149:5317:2:72:0,-38.6188,-471.828	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244
chr09	22734622	.	TGGAG	TGGAA	85300.5	PASS	AB=0.51732;ABP=7.59863;AC=139;AF=0.747312;AN=186;AO=3983;CIGAR=4M1X;DP=4860;DPB=4860;DPRA=0;EPP=8651.98;EPPR=1842.25;GTI=5;LEN=1;MEANALT=1.27957;MQM=59.4768;MQMR=60;NS=93;NUMALT=1;ODDS=1.79023;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141635;QR=29404;RO=847;RPL=0;RPP=8651.98;RPPR=1842.25;RPR=3983;RUN=1;SAF=0;SAP=8651.98;SAR=3983;SRF=0;SRP=1842.25;SRR=847;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,80:0:0:80:2830:-254.858,-24.0824,0	0/1:71:31,39:31:1066:39:1392:-103.823,0,-74.8165	1/1:47:0,47:0:0:47:1688:-152.189,-14.1484,0	1/1:109:0,109:0:0:109:3874:-348.801,-32.8123,0	0/1:33:10,22:10:352:22:792:-61.596,0,-22.0625	0/1:9:5,4:5:177:4:144:-10.6043,0,-13.5677	0/1:87:57,30:57:1987:30:1072:-70.6024,0,-152.914	1/1:65:0,64:0:0:64:2260:-203.302,-19.2659,0	0/1:38:14,24:14:487:24:852:-65.5612,0,-32.7205	1/1:60:0,60:0:0:60:2143:-193.09,-18.0618,0	0/1:18:12,6:12:416:6:212:-14.0063,0,-32.3539	1/1:28:0,28:0:0:28:1000:-89.8064,-8.42884,0	1/1:32:0,32:0:0:32:1129:-101.897,-9.63296,0	1/1:29:0,29:0:0:29:1022:-92.2771,-8.72987,0	0/1:27:13,14:13:463:14:482:-35.5782,0,-33.8795	0/1:23:8,15:8:285:15:528:-40.9277,0,-19.0709	0/1:18:11,7:11:372:7:252:-17.243,0,-28.3878	0/1:27:8,19:8:269:19:672:-52.6673,0,-16.4093	1/1:16:0,16:0:0:16:559:-50.6376,-4.81648,0	1/1:132:0,131:0:0:131:4691:-421.677,-39.4349,0	1/1:92:0,92:0:0:92:3270:-294.501,-27.6948,0	0/1:93:61,30:61:2100:30:1067:-68.5604,0,-161.517	0/1:27:11,16:11:391:16:568:-43.3103,0,-27.402	1/1:98:0,98:0:0:98:3483:-313.652,-29.5009,0	1/1:67:0,67:0:0:67:2384:-214.787,-20.169,0	1/1:250:0,249:0:0:249:8888:-799.373,-74.9565,0	0/1:106:53,53:53:1853:53:1895:-138.877,0,-135.141	0/1:15:10,5:10:351:5:176:-11.6556,0,-27.412	1/1:153:0,153:0:0:153:5465:-491.892,-46.0576,0	1/1:79:0,77:0:0:77:2732:-245.749,-23.1793,0	0/1:82:29,52:29:1014:52:1863:-143.093,0,-66.888	1/1:12:0,11:0:0:11:396:-35.6236,-3.31133,0	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,5:0:0:5:180:-16.2872,-1.50515,0	0/1:85:43,42:43:1481:42:1491:-108.826,0,-107.996	1/1:156:0,155:0:0:155:5540:-498.221,-46.6597,0	1/1:28:0,27:0:0:27:945:-85.0592,-8.12781,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:63:38,25:38:1290:25:892:-61.5797,0,-97.4318	1/1:20:0,20:0:0:20:716:-64.6328,-6.0206,0	1/1:108:0,108:0:0:108:3859:-347.441,-32.5112,0	1/1:25:0,24:0:0:24:840:-75.6351,-7.22472,0	1/1:31:0,31:0:0:31:1095:-98.8568,-9.33193,0	0/1:75:34,41:34:1172:41:1447:-107.934,0,-83.2065	0/1:44:22,21:22:766:21:748:-54.3396,0,-55.958	1/1:86:0,86:0:0:86:3063:-275.872,-25.8886,0	1/1:85:0,84:0:0:84:2977:-267.75,-25.2865,0	0/1:43:17,25:17:591:25:874:-65.9887,0,-40.5695	1/1:113:0,111:0:0:111:3947:-355.034,-33.4143,0	0/1:5:4,1:4:138:1:36:-2.09312,0,-11.2547	1/1:86:0,86:0:0:86:3033:-273.163,-25.8886,0	0/1:22:6,16:6:211:16:563:-44.1044,0,-12.7111	0/1:10:2,8:2:67:8:264:-21.0691,0,-3.35254	1/1:58:0,58:0:0:58:2070:-186.549,-17.4597,0	0/1:14:6,8:6:214:8:288:-22.0391,0,-15.3934	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:2,4:2:61:4:144:-11.5074,0,-3.98705	0/1:20:9,11:9:321:11:392:-29.5856,0,-23.2129	1/1:89:3,85:3:105:85:3036:-263.637,-16.9694,0	0/1:5:1,4:1:36:4:144:-11.7944,0,-2.09312	0/1:79:34,45:34:1183:45:1608:-121.188,0,-82.9927	1/1:99:2,96:2:72:96:3426:-301.339,-23.023,0	0/1:42:12,30:12:397:30:1063:-83.3376,0,-23.4049	0/1:45:22,23:22:773:23:809:-59.5682,0,-56.3457	0/1:87:45,42:45:1590:42:1476:-106.897,0,-117.202	1/1:53:0,53:0:0:53:1885:-169.899,-15.9546,0	1/1:9:0,9:0:0:9:315:-28.6849,-2.70927,0	0/1:43:29,13:29:995:13:456:-28.3531,0,-76.8551	1/1:63:0,63:0:0:63:2240:-201.849,-18.9649,0	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	1/1:79:0,75:0:0:75:2679:-240.586,-22.5773,0	0/1:40:21,19:21:730:19:680:-49.488,0,-53.979	1/1:59:1,58:1:36:58:2084:-184.218,-14.1625,0	1/1:47:0,47:0:0:47:1668:-150.303,-14.1484,0	0/1:59:20,38:20:712:38:1360:-104.828,0,-46.5874	1/1:27:0,27:0:0:27:963:-86.9844,-8.12781,0	0/1:6:3,3:3:93:3:108:-8.26899,0,-6.8716	0/1:33:11,22:11:376:22:792:-61.6717,0,-24.2355	0/1:59:28,30:28:966:30:1063:-78.1281,0,-69.4325	1/1:162:1,161:1:36:161:5695:-508.99,-45.1686,0	1/1:55:0,54:0:0:54:1912:-171.998,-16.2556,0	0/1:33:16,17:16:564:17:608:-45.1176,0,-41.157	0/1:30:19,11:19:658:11:396:-26.9514,0,-50.5126	1/1:65:0,65:0:0:65:2288:-206.087,-19.567,0	0/1:13:7,6:7:244:6:212:-15.5114,0,-18.3862	0/1:31:15,16:15:515:16:572:-42.4815,0,-37.344	1/1:27:0,27:0:0:27:947:-85.5345,-8.12781,0	0/1:15:8,7:8:272:7:235:-16.9486,0,-20.2951	0/1:35:11,24:11:377:24:856:-66.7663,0,-23.7231	0/1:22:16,6:16:563:6:216:-13.1539,0,-44.3775	1/1:60:0,60:0:0:60:2144:-193.2,-18.0618,0	1/1:46:0,46:0:0:46:1618:-145.859,-13.8474,0
chr09	22734666	.	A	T	88131.7	PASS	AB=0.524758;ABP=12.3648;AC=139;AF=0.747312;AN=186;AO=4065;CIGAR=1X;DP=4903;DPB=4903;DPRA=0;EPP=8830.05;EPPR=1822.7;GTI=5;LEN=1;MEANALT=1;MQM=59.3737;MQMR=59.9869;NS=93;NUMALT=1;ODDS=2.30613;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145492;QR=29949;RO=838;RPL=4065;RPP=8830.05;RPPR=1822.7;RPR=0;RUN=1;SAF=0;SAP=8830.05;SAR=4065;SRF=0;SRP=1822.7;SRR=838;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:83:0,83:0:0:83:2939:-264.659,-24.9855,0	0/1:70:31,39:31:1108:39:1396:-104.841,0,-78.9589	1/1:49:0,49:0:0:49:1759:-158.575,-14.7505,0	1/1:110:0,110:0:0:110:3952:-355.792,-33.1133,0	0/1:34:10,24:10:360:24:860:-67.4318,0,-22.5093	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:89:57,32:57:2036:32:1152:-77.1981,0,-156.721	1/1:68:0,68:0:0:68:2444:-220.139,-20.47,0	0/1:37:14,23:14:496:23:809:-61.9902,0,-33.8362	1/1:62:0,62:0:0:62:2224:-200.313,-18.6639,0	0/1:18:12,6:12:432:6:212:-14.0063,0,-33.8027	1/1:29:0,29:0:0:29:1036:-93.0451,-8.72987,0	1/1:33:0,33:0:0:33:1188:-107.193,-9.93399,0	1/1:30:0,30:0:0:30:1061:-95.7978,-9.0309,0	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:23:8,15:8:288:15:536:-41.6511,0,-19.3437	0/1:18:11,7:11:396:7:252:-17.243,0,-30.5642	0/1:28:8,20:8:275:20:712:-55.9379,0,-16.6546	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:132:0,132:0:0:132:4634:-416.91,-39.736,0	1/1:93:0,93:0:0:93:3318:-298.805,-27.9958,0	0/1:92:62,30:62:2185:30:1080:-69.791,0,-169.22	0/1:28:12,16:12:428:16:576:-43.7323,0,-30.43	1/1:96:0,96:0:0:96:3425:-308.418,-28.8989,0	1/1:68:0,68:0:0:68:2444:-220.203,-20.47,0	1/1:254:0,254:0:0:254:9136:-821.989,-76.4616,0	0/1:106:53,53:53:1892:53:1908:-140.047,0,-138.649	0/1:15:10,5:10:360:5:180:-12.0226,0,-28.2289	1/1:159:0,159:0:0:159:5712:-514.084,-47.8638,0	1/1:81:0,81:0:0:81:2893:-260.49,-24.3834,0	0/1:82:29,53:29:1032:53:1904:-146.699,0,-68.509	1/1:11:0,11:0:0:11:396:-35.9504,-3.31133,0	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,6:0:0:6:212:-19.102,-1.80618,0	0/1:85:42,43:42:1508:43:1544:-113.596,0,-110.427	1/1:160:0,160:0:0:160:5742:-516.703,-48.1648,0	1/1:28:0,28:0:0:28:1008:-91.0169,-8.42884,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:62:36,26:36:1284:26:917:-64.1257,0,-97.1996	1/1:21:0,21:0:0:21:756:-68.2324,-6.32163,0	1/1:108:0,108:0:0:108:3838:-345.551,-32.5112,0	1/1:24:0,24:0:0:24:864:-78.0818,-7.22472,0	1/1:31:0,31:0:0:31:1112:-100.389,-9.33193,0	0/1:72:33,39:33:1184:39:1399:-104.524,0,-85.1942	0/1:43:21,22:21:756:22:792:-58.6401,0,-55.4229	1/1:89:0,89:0:0:89:3190:-287.276,-26.7917,0	1/1:88:0,88:0:0:88:3141:-282.813,-26.4906,0	0/1:44:17,27:17:612:27:964:-73.7682,0,-42.1681	1/1:112:0,112:0:0:112:4032:-363.01,-33.7154,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:88:0,88:0:0:88:3131:-281.951,-26.4906,0	0/1:20:6,14:6:212:14:500:-39.0432,0,-13.4042	0/1:10:2,8:2:72:8:288:-23.2562,0,-3.82642	1/1:59:0,59:0:0:59:2105:-189.69,-17.7608,0	0/1:14:6,8:6:216:8:288:-22.0391,0,-15.5761	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:20:9,11:9:324:11:388:-29.234,0,-23.4853	1/1:91:0,91:0:0:91:3276:-294.983,-27.3937,0	0/1:5:1,4:1:36:4:144:-11.7944,0,-2.09312	0/1:80:35,45:35:1241:45:1601:-120.255,0,-87.8925	1/1:99:2,97:2:72:97:3465:-304.842,-22.9652,0	0/1:42:12,30:12:428:30:1080:-84.87,0,-26.2155	0/1:45:22,23:22:792:23:824:-60.9232,0,-58.0593	0/1:88:45,43:45:1616:43:1532:-111.645,0,-119.239	1/1:53:0,53:0:0:53:1900:-171.25,-15.9546,0	1/1:9:0,9:0:0:9:324:-29.5035,-2.70927,0	0/1:42:29,13:29:1044:13:453:-28.4387,0,-81.6315	1/1:64:0,64:0:0:64:2288:-206.144,-19.2659,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:82:0,82:0:0:82:2907:-261.452,-24.6845,0	0/1:40:21,19:21:752:19:684:-49.8491,0,-55.9651	1/1:60:0,60:0:0:60:2152:-193.933,-18.0618,0	1/1:47:0,47:0:0:47:1688:-151.965,-14.1484,0	0/1:61:21,40:21:756:40:1425:-110.101,0,-50.0044	1/1:28:0,28:0:0:28:989:-89.3205,-8.42884,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:33:11,22:11:388:22:792:-61.6717,0,-25.3234	0/1:59:27,32:27:960:32:1152:-86.1765,0,-68.9555	1/1:164:0,164:0:0:164:5883:-529.468,-49.3689,0	1/1:55:1,54:1:36:54:1944:-171.638,-12.9584,0	0/1:33:16,17:16:568:17:612:-45.479,0,-41.5179	0/1:29:18,11:18:644:11:396:-27.2525,0,-49.5607	1/1:65:0,65:0:0:65:2332:-209.958,-19.567,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	1/1:26:0,26:0:0:26:936:-84.5112,-7.82678,0	0/1:15:8,7:8:288:7:252:-18.4996,0,-21.752	0/1:33:10,23:10:360:23:828:-64.8651,0,-22.8103	0/1:22:16,6:16:572:6:213:-12.8866,0,-45.1908	1/1:60:0,60:0:0:60:2143:-193.113,-18.0618,0	1/1:47:0,47:0:0:47:1692:-152.455,-14.1484,0
chr09	22780667	.	T	G	295106	PASS	AB=0.561885;ABP=182.276;AC=141;AF=0.75;AN=188;AO=10849;CIGAR=1X;DP=13235;DPB=13235;DPRA=0;EPP=23561.3;EPPR=5171.11;GTI=2;LEN=1;MEANALT=1.06383;MQM=54.0295;MQMR=54.1059;NS=94;NUMALT=1;ODDS=6.21631;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=385959;QR=84419;RO=2380;RPL=5040;RPP=121.374;RPPR=52.1184;RPR=5809;RUN=1;SAF=5040;SAP=121.374;SAR=5809;SRF=1074;SRP=52.1184;SRR=1306;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:101:0,101:0:0:101:3565:-319.597,-30.404,0	0/1:136:54,81:54:1902:81:2908:-219.993,0,-129.066	1/1:211:0,211:0:0:211:7534:-674.59,-63.5173,0	1/1:290:4,286:4:140:286:10169:-900.711,-74.3623,0	0/1:66:27,39:27:955:39:1381:-103.932,0,-65.6509	0/1:83:31,52:31:1096:52:1864:-142.048,0,-73.6114	0/1:169:70,99:70:2470:99:3492:-263.255,0,-171.182	1/1:225:0,225:0:0:225:7998:-717.273,-67.7318,0	0/1:214:83,131:83:2972:131:4671:-354.447,0,-202.268	1/1:146:1,145:1:36:145:5149:-458.058,-40.3521,0	0/1:78:29,49:29:1025:49:1743:-133.257,0,-68.5271	1/1:162:0,162:0:0:162:5751:-514.123,-48.7669,0	1/1:132:0,132:0:0:132:4695:-420.223,-39.736,0	1/1:93:0,93:0:0:93:3289:-295.244,-27.9958,0	0/1:107:53,54:53:1869:54:1936:-142.085,0,-135.992	0/1:92:50,42:50:1757:42:1508:-108.126,0,-130.244	0/1:64:28,36:28:1000:36:1271:-95.1251,0,-70.2782	0/1:54:17,37:17:599:37:1305:-100.612,0,-37.5828	1/1:47:0,47:0:0:47:1663:-148.674,-14.1484,0	1/1:262:0,262:0:0:262:9347:-839.79,-78.8699,0	1/1:292:0,291:0:0:291:10322:-924.632,-87.5997,0	0/1:130:86,44:86:3057:44:1565:-101.802,0,-236	0/1:160:64,96:64:2246:96:3435:-260.685,0,-153.877	1/1:154:0,154:0:0:154:5474:-489.706,-46.3586,0	1/1:132:0,132:0:0:132:4712:-422.951,-39.736,0	1/1:394:3,391:3:93:391:13855:-1236.33,-109.93,0	0/1:378:189,189:189:6728:189:6754:-492.975,0,-487.795	0/1:50:15,35:15:540:35:1260:-98.4289,0,-33.5881	1/1:461:0,461:0:0:461:16454:-1478.62,-138.775,0	1/1:197:0,197:0:0:197:6995:-628.008,-59.3029,0	0/1:160:62,98:62:2197:98:3503:-266.129,0,-149.651	1/1:10:0,10:0:0:10:352:-31.9723,-3.0103,0	0/1:9:3,6:3:104:6:216:-17.0625,0,-6.9821	0/1:10:6,4:6:216:4:144:-9.8149,0,-16.7099	1/1:8:0,8:0:0:8:288:-26.1957,-2.40824,0	1/1:13:0,13:0:0:13:460:-41.6385,-3.91339,0	0/1:269:137,132:137:4884:132:4711:-342.66,0,-358.38	1/1:118:0,118:0:0:118:4188:-374.815,-35.5215,0	1/1:62:2,60:2:72:60:2124:-183.953,-11.8271,0	1/1:1:0,1:0:0:1:27:-2.69914,-0.30103,0	0/1:230:92,138:92:3300:138:4859:-366.722,0,-227.342	1/1:38:0,38:0:0:38:1355:-121.493,-11.4391,0	1/1:241:0,241:0:0:241:8535:-766.475,-72.5482,0	1/1:90:0,90:0:0:90:3173:-285.357,-27.0927,0	1/1:96:1,95:1:32:95:3375:-300.375,-25.6996,0	0/1:187:80,107:80:2852:107:3832:-287.526,0,-200.383	0/1:131:52,78:52:1832:78:2795:-210.52,0,-125.295	1/1:241:1,240:1:36:240:8525:-761.807,-68.95,0	1/1:128:0,128:0:0:128:4523:-405.692,-38.5318,0	0/1:140:57,83:57:2028:83:2967:-224.508,0,-140.257	1/1:65:0,65:0:0:65:2328:-209.668,-19.567,0	0/1:17:6,11:6:216:11:396:-30.8393,0,-14.6564	1/1:171:0,171:0:0:171:6101:-547.276,-51.4761,0	0/1:122:64,58:64:2273:58:2076:-150.303,0,-167.848	0/1:6:5,1:5:180:1:36:-1.78305,0,-14.7043	1/1:256:0,256:0:0:256:9101:-816.165,-77.0637,0	0/1:62:25,37:25:892:37:1332:-101.348,0,-61.88	1/1:15:0,15:0:0:15:540:-48.9214,-4.51545,0	0/1:16:4,12:4:144:12:432:-34.3894,0,-8.48598	0/1:118:42,76:42:1492:76:2719:-208.403,0,-98.2597	1/1:128:1,127:1:32:127:4503:-400.423,-35.334,0	0/1:13:7,6:7:248:6:216:-15.8628,0,-18.7356	0/1:242:96,146:96:3403:146:5190:-393.421,0,-233.387	1/1:383:2,381:2:72:381:13551:-1209.04,-108.463,0	0/1:111:34,77:34:1216:77:2745:-213.01,0,-76.0523	0/1:114:46,68:46:1648:68:2427:-184.061,0,-114.051	0/1:252:110,142:110:3911:142:5054:-377.573,0,-274.956	1/1:228:1,226:1:36:226:7990:-714.589,-65.0977,0	1/1:75:1,74:1:36:74:2633:-232.589,-18.979,0	0/1:88:37,51:37:1308:51:1811:-135.629,0,-91.0604	1/1:71:0,71:0:0:71:2507:-225.287,-21.3731,0	0/1:20:8,12:8:280:12:432:-33.1723,0,-18.9217	1/1:162:0,162:0:0:162:5781:-517.318,-48.7669,0	0/1:137:59,77:59:2074:77:2740:-203.741,0,-144.813	1/1:259:1,258:1:36:258:9205:-821.646,-74.3736,0	1/1:315:0,315:0:0:315:11217:-1006.71,-94.8245,0	0/1:173:66,107:66:2347:107:3813:-290.021,0,-158.636	1/1:245:1,244:1:36:244:8712:-776.368,-70.1631,0	0/1:25:12,13:12:432:13:468:-34.8271,0,-31.4137	0/1:202:92,110:92:3264:110:3931:-292.634,0,-232.327	0/1:162:61,101:61:2167:101:3567:-270.566,0,-145.652	1/1:318:1,317:1:36:317:11212:-1003.21,-92.1319,0	1/1:109:0,109:0:0:109:3891:-349.454,-32.8123,0	0/1:100:51,49:51:1812:49:1718:-124.491,0,-132.744	0/1:68:34,34:34:1208:34:1214:-88.9653,0,-88.3555	1/1:220:2,218:2:72:218:7766:-689.864,-59.3948,0	0/1:39:17,22:17:591:22:784:-58.547,0,-41.4406	0/1:103:43,60:43:1504:60:2136:-160.674,0,-103.952	1/1:103:0,103:0:0:103:3683:-330.143,-31.0061,0	0/1:46:21,25:21:743:25:888:-66.2538,0,-53.1274	0/1:126:62,63:62:2187:63:2248:-164.114,0,-158.274	0/1:110:70,40:70:2449:40:1404:-93.4551,0,-187.298	1/1:195:1,194:1:36:194:6968:-622.643,-55.1221,0	1/1:183:0,183:0:0:183:6476:-581.327,-55.0885,0
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chr09	22799897	.	C	T	25790.7	PASS	AB=0.517335;ABP=10.6894;AC=50;AF=0.271739;AN=184;AO=1544;CIGAR=1X;DP=6960;DPB=6960;DPRA=0.895318;EPP=3355.76;EPPR=11752.8;GTI=3;LEN=1;MEANALT=1.01818;MQM=59.9767;MQMR=59.9911;NS=92;NUMALT=1;ODDS=2.26281;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55046;QR=190500;RO=5411;RPL=0;RPP=3355.76;RPPR=11735.5;RPR=1544;RUN=1;SAF=0;SAP=3355.76;SAR=1544;SRF=2;SRP=11735.5;SRR=5409;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:108:63,45:63:2205:45:1612:-112.859,0,-166.203	0/0:88:87,1:87:3067:1:36:0,-22.8924,-272.661	0/0:152:150,2:150:5265:2:72:0,-38.9198,-467.155	0/1:31:15,16:15:528:16:576:-42.8431,0,-38.5194	0/1:34:25,9:25:888:9:320:-18.9073,0,-70.004	0/1:175:73,102:73:2581:102:3641:-275.214,0,-179.856	0/0:88:88,0:88:3093:0:0:0,-26.4906,-278.282	0/1:73:32,41:32:1107:41:1476:-111.161,0,-77.9579	0/0:81:80,0:80:2766:0:0:0,-24.0824,-248.861	0/1:29:13,16:13:460:16:576:-43.4451,0,-33.0055	0/0:56:56,0:56:1911:0:0:0,-16.8577,-172.265	0/0:71:71,0:71:2462:0:0:0,-21.3731,-221.833	0/0:50:50,0:50:1729:0:0:0,-15.0515,-155.892	0/1:77:40,37:40:1405:37:1301:-94.2099,0,-103.566	0/1:57:31,26:31:1108:26:928:-66.6795,0,-82.8723	0/1:38:15,23:15:523:23:819:-62.5924,0,-35.9593	0/1:63:34,29:34:1208:29:1040:-74.9495,0,-90.0612	0/0:27:27,0:27:947:0:0:0,-8.12781,-85.5438	0/0:113:111,2:111:3939:2:72:0,-27.1797,-347.868	0/0:96:96,0:96:3383:0:0:0,-28.8989,-304.684	0/1:103:36,67:36:1287:67:2399:-185.16,0,-85.1267	0/1:70:32,37:32:1148:37:1324:-98.3313,0,-82.499	0/0:104:104,0:104:3693:0:0:0,-31.3071,-332.573	0/0:52:52,0:52:1836:0:0:0,-15.6536,-165.518	0/0:271:270,0:270:9564:0:0:0,-81.2781,-860.366	0/1:182:89,93:89:3134:93:3328:-244.951,0,-227.498	0/1:29:18,11:18:640:11:396:-27.2529,0,-49.1994	0/0:219:217,2:217:7662:2:72:0,-59.0888,-682.787	0/0:114:114,0:114:4053:0:0:0,-34.3174,-364.958	0/1:94:46,48:46:1613:48:1724:-127.149,0,-117.16	.:.:.:.:.:.:.:.	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:155:77,78:77:2715:78:2758:-201.8,0,-197.936	0/0:148:148,0:148:5238:0:0:0,-44.5524,-471.564	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:115:52,63:52:1864:63:2239:-167.154,0,-133.421	0/0:41:41,0:41:1440:0:0:0,-12.3422,-129.896	0/0:100:100,0:100:3505:0:0:0,-30.103,-315.662	0/0:56:56,0:56:1944:0:0:0,-16.8577,-175.234	0/0:46:46,0:46:1614:0:0:0,-13.8474,-145.548	0/1:81:46,35:46:1643:35:1256:-88.9619,0,-123.774	0/1:86:41,45:41:1460:45:1604:-118.762,0,-105.807	0/0:134:134,0:134:4728:0:0:0,-40.338,-425.684	0/0:96:96,0:96:3389:0:0:0,-28.8989,-305.227	0/1:67:26,41:26:932:41:1454:-110.985,0,-64.0299	0/0:117:117,0:117:4138:0:0:0,-35.2205,-372.608	.:.:.:.:.:.:.:.	0/0:136:135,0:135:4759:0:0:0,-40.639,-428.113	0/1:42:14,28:14:496:28:992:-76.9511,0,-32.331	0/1:27:12,15:12:420:15:532:-40.0853,0,-30.0062	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.772	0/1:33:16,17:16:549:17:604:-44.7566,0,-39.7985	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:34:17,17:17:589:17:608:-44.817,0,-43.0983	0/0:111:110,1:110:3873:1:36:0,-29.8161,-345.171	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:192:97,95:97:3451:95:3377:-246.293,0,-253.006	0/0:140:140,0:140:4966:0:0:0,-42.1442,-447.093	0/1:51:22,29:22:758:29:1024:-77.1188,0,-53.1842	0/1:54:23,31:23:812:31:1104:-83.415,0,-57.1453	0/1:147:73,74:73:2575:74:2651:-194.583,0,-187.749	0/0:92:91,1:91:3213:1:36:0,-24.0965,-285.793	0/0:7:7,0:7:236:0:0:0,-2.10721,-21.5699	0/1:56:28,28:28:995:28:1000:-73.4577,0,-73.0063	0/0:77:77,0:77:2673:0:0:0,-23.1793,-240.813	0/1:18:14,4:14:496:4:144:-7.89508,0,-39.5557	0/0:107:107,0:107:3768:0:0:0,-32.2102,-339.323	0/1:92:47,45:47:1655:45:1612:-117.675,0,-121.542	0/0:78:77,0:77:2696:0:0:0,-23.1793,-242.523	0/0:176:174,2:174:6123:2:72:0,-46.1446,-544.339	0/1:43:23,20:23:816:20:712:-51.4624,0,-60.8174	0/0:71:70,1:70:2470:1:36:0,-17.7749,-218.956	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:89:45,44:45:1577:44:1554:-113.359,0,-115.427	0/1:68:33,35:33:1176:35:1236:-91.0742,0,-85.6777	0/0:159:159,0:159:5633:0:0:0,-47.8638,-507.094	0/0:95:95,0:95:3320:0:0:0,-28.5978,-299.019	0/1:31:15,16:15:499:16:557:-41.1236,0,-35.8962	0/1:66:36,30:36:1242:30:1076:-77.2849,0,-92.2121	0/0:104:104,0:104:3633:0:0:0,-31.3071,-327.179	0/1:34:15,19:15:518:19:676:-50.933,0,-36.7105	0/1:43:26,17:26:924:17:612:-42.4691,0,-70.5334	0/0:58:58,0:58:1998:0:0:0,-17.4597,-180.091	0/1:20:12,8:12:397:8:288:-20.2468,0,-30.0277	0/1:59:21,38:21:717:38:1332:-102.416,0,-47.0848	0/1:54:19,35:19:634:35:1256:-97.0897,0,-41.1159	0/0:88:88,0:88:3099:0:0:0,-26.4906,-279.138	0/0:65:65,0:65:2261:0:0:0,-19.5669,-203.753
chr09	22872646	.	A	T	119749	PASS	AB=0.524444;ABP=18.1913;AC=139;AF=0.747312;AN=186;AO=5705;CIGAR=1X;DP=7107;DPB=7107;DPRA=0;EPP=12391.3;EPPR=3034.39;GTI=2;LEN=1;MEANALT=1.05376;MQM=49.4273;MQMR=59.9842;NS=93;NUMALT=1;ODDS=0.0552168;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=204210;QR=49279;RO=1396;RPL=0;RPP=12391.3;RPPR=3034.39;RPR=5705;RUN=1;SAF=5705;SAP=12391.3;SAR=0;SRF=1396;SRP=3034.39;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1536:-132.206,-12.9443,0	0/1:116:39,77:39:1376:77:2738:-201.753,0,-89.2192	1/1:157:0,157:0:0:157:5605:-495.537,-47.2617,0	1/1:199:0,199:0:0:199:7132:-627.119,-59.905,0	0/1:52:17,35:17:608:35:1260:-95.8398,0,-39.3985	0/1:44:31,13:31:1116:13:464:-27.9035,0,-87.5064	0/1:90:41,48:41:1472:48:1720:-126.037,0,-105.625	1/1:110:0,108:0:0:108:3837:-339.9,-32.5112,0	0/1:83:36,47:36:1272:47:1676:-121.898,0,-89.7974	1/1:65:0,65:0:0:65:2332:-207.41,-19.567,0	0/1:20:11,9:11:388:9:324:-23.4137,0,-29.2368	1/1:36:0,36:0:0:36:1277:-113.39,-10.8371,0	1/1:36:0,36:0:0:36:1296:-114.635,-10.8371,0	1/1:29:0,29:0:0:29:1044:-93.2538,-8.72987,0	0/1:30:18,12:18:644:12:432:-30.0917,0,-49.2597	0/1:31:15,16:15:536:16:576:-42.6093,0,-39.2429	0/1:32:17,15:17:604:15:540:-38.4284,0,-45.0576	0/1:23:10,13:10:360:13:468:-35.2428,0,-25.8206	1/1:18:0,18:0:0:18:648:-57.4708,-5.41854,0	1/1:173:0,173:0:0:173:6204:-552.426,-52.0782,0	1/1:136:0,136:0:0:136:4845:-427.454,-40.9401,0	0/1:152:103,48:103:3574:48:1724:-108.44,0,-276.051	0/1:87:35,52:35:1236:52:1868:-140.345,0,-85.3546	1/1:115:2,113:2:57:113:4050:-355.95,-29.2051,0	1/1:58:0,58:0:0:58:2084:-184.25,-17.4597,0	1/1:267:0,267:0:0:267:9505:-848.953,-80.375,0	0/1:247:97,150:97:3423:150:5380:-401.421,0,-233.928	0/1:22:9,13:9:305:13:468:-34.9657,0,-21.1546	1/1:246:0,246:0:0:246:8813:-788.636,-74.0534,0	1/1:83:0,83:0:0:83:2968:-265.723,-24.9855,0	0/1:101:60,41:60:2137:41:1472:-100.59,0,-162.192	1/1:8:0,8:0:0:8:288:-26.1747,-2.40824,0	0/1:8:2,6:2:68:6:216:-17.2985,0,-4.04947	0/1:5:3,2:3:108:2:68:-2.4089,0,-8.57002	1/1:17:0,17:0:0:17:604:-53.0148,-5.11751,0	1/1:16:0,16:0:0:16:568:-50.4839,-4.81648,0	0/1:107:42,65:42:1474:65:2332:-177.182,0,-100.74	1/1:189:0,188:0:0:188:6747:-596.207,-56.5936,0	1/1:24:0,24:0:0:24:860:-76.7669,-7.22472,0	.:.:.:.:.:.:.:.	0/1:140:77,63:77:2706:63:2260:-157.533,0,-201.639	1/1:17:0,17:0:0:17:604:-54.1156,-5.11751,0	1/1:132:1,131:1:36:131:4692:-413.655,-36.1377,0	1/1:44:0,44:0:0:44:1576:-141.566,-13.2453,0	1/1:30:0,29:0:0:29:1040:-92.6159,-8.72987,0	0/1:81:37,44:37:1324:44:1568:-115.56,0,-95.0787	0/1:97:44,53:44:1542:53:1888:-139.455,0,-109.866	1/1:167:0,167:0:0:167:5960:-526.613,-50.272,0	1/1:87:1,86:1:36:86:3084:-270.877,-22.5913,0	0/1:127:72,55:72:2512:55:1972:-138.252,0,-188.097	1/1:172:1,171:1:36:171:6148:-544.473,-48.1789,0	0/1:7:3,4:3:104:4:144:-11.1729,0,-7.5956	1/1:115:0,115:0:0:115:4120:-362.491,-34.6185,0	0/1:28:16,12:16:564:12:432:-30.752,0,-42.6615	0/1:17:7,10:7:248:10:360:-26.5591,0,-17.5467	1/1:115:1,114:1:36:114:4084:-358.784,-31.0202,0	0/1:43:14,29:14:504:29:1040:-79.953,0,-32.7538	1/1:9:0,9:0:0:9:324:-29.343,-2.70927,0	0/1:6:1,5:1:21:5:180:-14.7288,0,-0.293766	0/1:61:29,32:29:1013:32:1136:-81.4052,0,-73.1165	1/1:64:0,64:0:0:64:2296:-202.218,-19.2659,0	0/1:5:4,1:4:144:1:32:-1.69053,0,-11.8085	0/1:171:72,99:72:2497:99:3552:-265.41,0,-173.501	1/1:154:0,154:0:0:154:5516:-487.587,-46.3586,0	0/1:47:19,28:19:680:28:1000:-74.3137,0,-47.3808	0/1:74:46,28:46:1629:28:1000:-67.3885,0,-124.621	0/1:183:88,95:88:3114:95:3382:-246.23,0,-225.397	1/1:139:0,139:0:0:139:4988:-442.631,-41.8432,0	1/1:5:0,5:0:0:5:180:-16.482,-1.50515,0	0/1:79:30,49:30:1076:49:1752:-130.291,0,-73.3699	1/1:48:0,48:0:0:48:1715:-153.76,-14.4494,0	0/1:17:6,11:6:212:11:388:-29.9924,0,-14.3073	1/1:89:0,89:0:0:89:3184:-280.996,-26.7917,0	0/1:31:15,16:15:536:16:572:-41.9855,0,-39.2413	1/1:95:0,95:0:0:95:3400:-303.076,-28.5979,0	1/1:122:0,122:0:0:122:4384:-388.291,-36.7257,0	0/1:68:24,44:24:852:44:1580:-118.501,0,-56.5303	1/1:110:0,110:0:0:110:3933:-344.767,-33.1133,0	0/1:9:4,5:4:144:5:180:-13.5439,0,-10.6043	0/1:101:45,56:45:1608:56:2012:-148.577,0,-114.606	0/1:84:46,38:46:1621:38:1364:-93.0598,0,-120.885	1/1:135:1,134:1:36:134:4788:-419.527,-37.0408,0	1/1:42:0,42:0:0:42:1508:-132.938,-12.6433,0	0/1:16:10,6:10:360:6:216:-14.8135,0,-27.9278	0/1:44:21,23:21:733:23:824:-60.0315,0,-53.0443	1/1:74:0,74:0:0:74:2643:-231.592,-22.2762,0	0/1:22:10,12:10:352:12:428:-31.4135,0,-25.3955	0/1:41:19,22:19:684:22:792:-57.468,0,-49.5481	1/1:38:0,38:0:0:38:1364:-116.559,-11.4391,0	0/1:17:8,9:8:288:9:324:-24.2635,0,-21.1499	0/1:32:20,12:20:701:12:432:-29.3585,0,-53.7788	0/1:27:16,11:16:572:11:396:-27.7025,0,-43.6856	1/1:102:0,102:0:0:102:3652:-324.153,-30.7051,0	1/1:52:0,52:0:0:52:1852:-165.672,-15.6536,0
chr09	22872685	.	T	C	121533	PASS	AB=0.51503;ABP=8.88502;AC=139;AF=0.747312;AN=186;AO=5735;CIGAR=1X;DP=7200;DPB=7200;DPRA=0;EPP=12043;EPPR=2941.01;GTI=1;LEN=1;MEANALT=1.06452;MQM=49.5897;MQMR=59.9822;NS=93;NUMALT=1;ODDS=0.268569;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203670;QR=52100;RO=1459;RPL=5687;RPP=12043;RPPR=2941.01;RPR=48;RUN=1;SAF=5735;SAP=12456.4;SAR=0;SRF=1459;SRP=3171.19;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,42:0:0:42:1480:-127.246,-12.6433,0	0/1:123:45,77:45:1616:77:2735:-201.691,0,-108.631	1/1:163:4,159:4:144:159:5667:-488.878,-35.7543,0	1/1:195:0,195:0:0:195:6921:-612.663,-58.7009,0	0/1:63:26,37:26:932:37:1289:-95.6134,0,-65.234	0/1:50:36,14:36:1296:14:504:-30.054,0,-101.892	0/1:88:42,46:42:1493:46:1633:-119.491,0,-108.172	1/1:116:0,115:0:0:115:4091:-361.978,-34.6185,0	0/1:86:41,45:41:1455:45:1612:-115.802,0,-105.357	1/1:64:0,63:0:0:63:2239:-200.117,-18.9649,0	0/1:20:11,9:11:396:9:315:-22.6023,0,-29.9621	1/1:36:0,36:0:0:36:1256:-111.236,-10.8371,0	1/1:36:0,36:0:0:36:1288:-114.185,-10.8371,0	1/1:30:0,30:0:0:30:1072:-95.7794,-9.0309,0	0/1:30:17,13:17:608:13:468:-33.322,0,-46.0211	0/1:32:15,17:15:536:17:597:-44.1891,0,-38.9419	0/1:32:17,15:17:591:15:536:-38.08,0,-43.8823	0/1:23:10,13:10:356:13:460:-34.5454,0,-25.4576	1/1:18:0,18:0:0:18:627:-55.7998,-5.41854,0	1/1:173:0,172:0:0:172:6102:-542.427,-51.7772,0	1/1:134:0,134:0:0:134:4690:-414.584,-40.338,0	0/1:166:114,52:114:4069:52:1860:-116.594,0,-316.425	0/1:89:35,54:35:1245:54:1932:-145.594,0,-85.561	1/1:115:2,113:2:72:113:4026:-352.343,-27.7817,0	1/1:58:0,58:0:0:58:2038:-181.009,-17.4597,0	1/1:271:0,271:0:0:271:9622:-861.455,-81.5791,0	0/1:246:98,148:98:3486:148:5267:-394.358,0,-239.896	0/1:24:9,15:9:316:15:514:-38.2342,0,-21.5541	1/1:250:1,249:1:36:249:8873:-789.627,-71.6592,0	1/1:81:0,81:0:0:81:2885:-258.291,-24.3834,0	0/1:102:60,42:60:2145:42:1479:-101.113,0,-162.611	1/1:8:0,8:0:0:8:288:-26.1747,-2.40824,0	0/1:9:3,6:3:104:6:212:-16.6401,0,-6.99354	0/1:6:3,3:3:108:3:108:-5.6568,0,-8.26899	1/1:17:0,17:0:0:17:597:-52.3754,-5.11751,0	1/1:16:0,16:0:0:16:572:-50.7244,-4.81648,0	0/1:109:42,67:42:1499:67:2377:-180.507,0,-102.392	1/1:199:0,199:0:0:199:7073:-627.19,-59.905,0	1/1:24:0,24:0:0:24:856:-76.4273,-7.22472,0	.:.:.:.:.:.:.:.	0/1:141:78,63:78:2783:63:2219:-153.989,0,-208.265	1/1:17:0,17:0:0:17:612:-54.5548,-5.11751,0	1/1:133:1,132:1:36:132:4680:-413.718,-36.4387,0	1/1:45:0,45:0:0:45:1592:-143.009,-13.5464,0	1/1:30:0,30:0:0:30:1071:-95.7567,-9.0309,0	0/1:85:42,43:42:1490:43:1517:-109.836,0,-108.805	0/1:96:45,51:45:1598:51:1793:-131.269,0,-115.208	1/1:167:0,167:0:0:167:5962:-528.351,-50.272,0	1/1:86:0,86:0:0:86:3078:-273.968,-25.8886,0	0/1:125:72,53:72:2592:53:1881:-130.972,0,-195.899	1/1:172:0,172:0:0:172:6129:-547.26,-51.7772,0	0/1:8:3,5:3:104:5:167:-12.9003,0,-7.29457	1/1:117:0,117:0:0:117:4168:-368.231,-35.2205,0	0/1:30:17,13:17:608:13:453:-32.0282,0,-46.0211	0/1:19:9,10:9:324:10:351:-25.7303,0,-23.7863	1/1:116:1,115:1:36:115:4077:-357.879,-31.3212,0	0/1:43:14,29:14:504:29:1044:-80.4989,0,-32.7538	1/1:9:0,9:0:0:9:320:-28.9815,-2.70927,0	0/1:6:1,5:1:36:5:180:-14.7288,0,-1.79209	0/1:60:29,31:29:1040:31:1107:-81.3296,0,-75.8526	1/1:64:0,64:0:0:64:2295:-203.412,-19.2659,0	0/1:5:4,1:4:144:1:36:-2.08408,0,-11.8085	0/1:171:73,98:73:2624:98:3491:-260.497,0,-184.931	1/1:148:0,148:0:0:148:5284:-470.577,-44.5524,0	0/1:45:18,27:18:648:27:956:-71.1895,0,-45.1055	0/1:79:51,28:51:1824:28:1000:-65.8478,0,-140.66	0/1:185:88,97:88:3151:97:3476:-252.16,0,-228.124	1/1:142:0,142:0:0:142:5078:-453.399,-42.7463,0	1/1:4:0,4:0:0:4:140:-12.8967,-1.20412,0	0/1:78:30,47:30:1072:47:1675:-123.853,0,-73.3969	1/1:47:0,47:0:0:47:1656:-148.802,-14.1484,0	0/1:17:7,10:7:252:10:342:-25.7672,0,-17.9099	1/1:91:0,91:0:0:91:3232:-286.064,-27.3937,0	0/1:31:15,16:15:536:16:568:-41.7113,0,-39.2413	1/1:95:0,95:0:0:95:3345:-298.7,-28.5979,0	1/1:123:0,123:0:0:123:4366:-387.31,-37.0267,0	0/1:79:33,46:33:1160:46:1633:-120.815,0,-80.9225	1/1:112:0,112:0:0:112:3989:-349.709,-33.7154,0	0/1:9:4,5:4:144:5:180:-13.5439,0,-10.6043	0/1:107:47,60:47:1680:60:2130:-157.114,0,-119.277	0/1:81:43,38:43:1527:38:1359:-93.9508,0,-113.339	1/1:134:0,134:0:0:134:4749:-419.312,-40.338,0	1/1:42:0,42:0:0:42:1480:-130.34,-12.6433,0	0/1:16:10,6:10:360:6:192:-12.7324,0,-27.9278	0/1:43:20,23:20:720:23:804:-58.4065,0,-52.1845	1/1:72:0,72:0:0:72:2535:-225.174,-21.6742,0	0/1:21:9,12:9:320:12:424:-31.5924,0,-22.8207	0/1:43:22,21:22:784:21:752:-53.7714,0,-57.9396	1/1:37:0,37:0:0:37:1315:-114.286,-11.1381,0	0/1:17:8,9:8:288:9:320:-23.9083,0,-21.1499	0/1:29:18,11:18:640:11:392:-26.6824,0,-49.1994	0/1:27:16,11:16:572:11:388:-26.9869,0,-43.6856	1/1:103:0,103:0:0:103:3654:-324.661,-31.0061,0	1/1:53:0,53:0:0:53:1872:-166.995,-15.9546,0
chr09	22875955	.	A	G	20662.1	PASS	AB=0.490339;ABP=5.23402;AC=49;AF=0.260638;AN=188;AO=1352;CIGAR=1X;DP=6092;DPB=6092;DPRA=0.801851;EPP=2938.84;EPPR=10291.4;GTI=3;LEN=1;MEANALT=1.03636;MQM=45.5769;MQMR=41.4905;NS=94;NUMALT=1;ODDS=1.02433;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47301;QR=168764;RO=4738;RPL=0;RPP=2938.84;RPPR=10291.4;RPR=1352;RUN=1;SAF=0;SAP=2938.84;SAR=1352;SRF=0;SRP=10291.4;SRR=4738;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:40,1:40:1419:1:36:0,-8.79371,-119.616	0/1:82:43,39:43:1533:39:1387:-97.527,0,-106.506	0/0:115:115,0:115:4081:0:0:0,-34.6184,-353.93	0/0:121:121,0:121:4335:0:0:0,-36.4246,-377.174	0/1:26:6,20:6:216:20:709:-55.1968,0,-11.5388	0/1:8:4,4:4:144:4:144:-10.7213,0,-10.4703	0/1:94:50,44:50:1749:44:1540:-109.13,0,-125.191	0/0:60:60,0:60:2151:0:0:0,-18.0618,-187.587	0/1:62:25,37:25:892:37:1293:-94.7517,0,-59.4315	0/0:17:17,0:17:599:0:0:0,-5.11751,-52.8905	0/1:46:26,20:26:906:20:690:-47.7594,0,-65.7025	0/0:98:97,1:97:3424:1:32:0,-26.6018,-292.396	0/0:76:76,0:76:2716:0:0:0,-22.8783,-236.884	0/0:62:62,0:62:2211:0:0:0,-18.6639,-192.01	0/1:64:37,27:37:1309:27:946:-65.0819,0,-95.1509	0/1:80:36,44:36:1284:44:1548:-113.233,0,-88.4163	0/1:18:9,9:9:320:9:311:-22.5631,0,-22.8205	0/1:17:11,6:11:384:6:193:-12.3921,0,-28.7835	0/0:27:27,0:27:968:0:0:0,-8.12781,-82.8632	0/0:123:123,0:123:4393:0:0:0,-37.0267,-380.612	0/0:112:112,0:112:3957:0:0:0,-33.7154,-347.724	0/1:68:18,50:18:648:50:1765:-135.415,0,-36.624	0/1:99:40,59:40:1427:59:2075:-155.748,0,-94.7453	0/0:49:49,0:49:1743:0:0:0,-14.7505,-153.451	0/0:43:43,0:43:1526:0:0:0,-12.9443,-133.764	0/0:134:134,0:134:4812:0:0:0,-40.338,-417.167	0/1:94:52,42:52:1851:42:1479:-102.206,0,-134.5	0/1:17:10,7:10:352:7:229:-15.6726,0,-25.4435	0/0:150:150,0:150:5351:0:0:0,-45.1545,-466.991	0/0:110:110,0:110:3926:0:0:0,-33.1133,-343.386	0/1:91:50,41:50:1768:41:1441:-100.816,0,-126.694	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.0277	0/1:18:11,7:11:396:7:248:-17.0613,0,-29.7915	0/1:4:1,3:1:36:3:108:-8.73172,0,-2.27658	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.1736	0/0:19:19,0:19:666:0:0:0,-5.71957,-57.5357	0/1:171:96,75:96:3422:75:2566:-176.218,0,-248.377	0/0:64:63,1:63:2247:1:36:0,-16.0783,-192.758	0/0:36:36,0:36:1267:0:0:0,-10.8371,-109.949	0/1:5:4,1:4:144:1:36:-2.06166,0,-11.5226	0/1:96:53,43:53:1886:43:1499:-104.838,0,-135.799	0/0:26:26,0:26:927:0:0:0,-7.82678,-80.6627	0/0:58:58,0:58:2080:0:0:0,-17.4597,-182.255	0/0:27:27,0:27:964:0:0:0,-8.12781,-82.9328	0/0:38:38,0:38:1351:0:0:0,-11.4391,-118.49	0/1:83:41,42:41:1447:42:1470:-106.164,0,-100.227	0/1:53:25,28:25:896:28:975:-69.6277,0,-62.4088	0/0:91:91,0:91:3255:0:0:0,-27.3937,-282.693	0/0:103:103,0:103:3638:0:0:0,-31.0061,-316.155	0/1:75:37,37:37:1324:37:1306:-94.2439,0,-92.4102	0/0:88:88,0:88:3139:0:0:0,-26.4906,-274.753	0/1:20:9,11:9:320:11:383:-28.4932,0,-21.9797	0/0:107:107,0:107:3832:0:0:0,-32.2102,-332.994	0/1:41:28,13:28:1004:13:460:-28.8732,0,-75.0806	0/1:5:3,2:3:108:2:63:-4.42446,0,-8.2408	0/0:87:87,0:87:3071:0:0:0,-26.1896,-269.625	0/1:83:33,50:33:1188:50:1740:-130.287,0,-79.3546	0/0:11:11,0:11:392:0:0:0,-3.31133,-33.8316	0/1:16:8,8:8:288:8:279:-20.3525,0,-20.6104	0/1:65:43,22:43:1529:22:771:-48.9687,0,-115.287	0/0:83:83,0:83:2943:0:0:0,-24.9855,-256.713	0/1:5:2,3:2:72:3:108:-8.48192,0,-5.14998	0/1:133:82,50:82:2918:50:1774:-118.184,0,-215.224	0/0:124:122,2:122:4357:2:72:0,-30.5508,-372.762	0/1:49:22,27:22:780:27:953:-70.5764,0,-53.7807	0/1:34:17,17:17:612:17:604:-44.0157,0,-43.7974	0/1:138:72,66:72:2552:66:2299:-162.447,0,-181.996	0/0:100:100,0:100:3566:0:0:0,-30.103,-307.861	0/1:33:29,4:29:1031:4:144:-3.26322,0,-81.0841	0/1:77:35,42:35:1232:42:1489:-107.503,0,-83.6981	0/0:38:38,0:38:1355:0:0:0,-11.4391,-118.503	0/1:24:8,16:8:288:16:576:-44.4941,0,-17.8143	0/0:124:124,0:124:4418:0:0:0,-37.3277,-383.177	0/1:57:24,33:24:856:33:1157:-85.4242,0,-57.7916	0/0:92:92,0:92:3280:0:0:0,-27.6948,-286.945	0/0:122:122,0:122:4372:0:0:0,-36.7257,-380.721	0/1:47:29,18:29:1044:18:644:-42.9102,0,-75.5606	0/0:69:68,1:68:2435:1:36:0,-17.2226,-207.925	0/1:26:20,6:20:716:6:216:-11.6901,0,-54.8897	0/1:65:38,27:38:1332:27:948:-64.5764,0,-96.8709	0/1:69:23,46:23:820:46:1603:-120.64,0,-50.58	0/0:135:135,0:135:4839:0:0:0,-40.639,-422.873	0/0:65:65,0:65:2320:0:0:0,-19.5669,-202.656	0/1:58:31,27:31:1112:27:932:-65.3187,0,-79.0709	0/1:33:15,18:15:540:18:635:-45.9482,0,-37.4337	0/0:94:93,1:93:3332:1:36:0,-24.73,-285.228	0/1:20:11,9:11:396:9:320:-22.7404,0,-28.1095	0/1:70:35,35:35:1256:35:1206:-85.9652,0,-87.7818	0/0:59:59,0:59:2116:0:0:0,-17.7608,-180.886	0/1:48:20,28:20:701:28:992:-72.9962,0,-47.6188	0/1:112:60,52:60:2096:52:1798:-126.349,0,-149.037	0/1:44:14,30:14:487:30:1001:-76.1239,0,-29.8743	0/0:60:60,0:60:2143:0:0:0,-18.0618,-185.694	0/0:80:80,0:80:2839:0:0:0,-24.0824,-249.041
chr09	22875960	.	A	C	95274.1	PASS	AB=0.504165;ABP=3.42635;AC=139;AF=0.739362;AN=188;AO=4758;CIGAR=1X;DP=6141;DPB=6141;DPRA=0;EPP=10334.9;EPPR=2997.47;GTI=2;LEN=1;MEANALT=1.04255;MQM=41.4643;MQMR=45.5997;NS=94;NUMALT=1;ODDS=4.79489;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169300;QR=49334;RO=1379;RPL=0;RPP=10334.9;RPPR=2997.47;RPR=4758;RUN=1;SAF=0;SAP=10334.9;SAR=4758;SRF=0;SRP=2997.47;SRR=1379;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:1,42:1:36:42:1494:-126.076,-9.39577,0	0/1:84:41,43:41:1472:43:1544:-106.854,0,-103.333	1/1:116:0,116:0:0:116:4134:-358.894,-34.9195,0	1/1:121:0,121:0:0:121:4284:-373.598,-36.4246,0	0/1:26:20,6:20:720:6:216:-11.5388,0,-55.9092	0/1:9:4,5:4:144:5:180:-13.3019,0,-10.4202	0/1:95:44,51:44:1584:51:1794:-128.762,0,-112.646	1/1:60:0,59:0:0:59:2094:-182.26,-17.7608,0	0/1:61:37,23:37:1317:23:828:-53.9778,0,-97.4804	1/1:17:0,17:0:0:17:597:-52.6678,-5.11751,0	0/1:45:20,25:20:720:25:896:-65.0188,0,-50.6698	1/1:99:1,97:1:36:97:3445:-293.137,-26.3073,0	1/1:75:0,75:0:0:75:2696:-234.258,-22.5773,0	1/1:63:0,63:0:0:63:2237:-194.326,-18.9649,0	0/1:62:27,35:27:972:35:1244:-90.3026,0,-67.9459	0/1:79:43,36:43:1540:36:1288:-89.2832,0,-112.062	0/1:19:9,10:9:324:10:345:-24.6975,0,-23.3783	0/1:17:6,11:6:208:11:392:-29.3875,0,-13.7215	1/1:27:0,27:0:0:27:964:-82.7791,-8.12781,0	1/1:123:0,123:0:0:123:4383:-380.565,-37.0267,0	1/1:115:0,115:0:0:115:4078:-358.422,-34.6185,0	0/1:70:52,18:52:1868:18:648:-36.0219,0,-143.583	0/1:98:58,40:58:2080:40:1415:-92.9238,0,-156.429	1/1:50:0,50:0:0:50:1781:-156.708,-15.0515,0	1/1:44:1,43:1:36:43:1533:-130.074,-9.64705,0	1/1:137:1,136:1:36:136:4854:-417.779,-37.6428,0	0/1:94:42,52:42:1484:52:1863:-135.458,0,-102.922	0/1:16:7,9:7:252:9:324:-23.2192,0,-18.0111	1/1:148:0,148:0:0:148:5311:-463.308,-44.5524,0	1/1:110:0,110:0:0:110:3923:-343.173,-33.1133,0	0/1:96:43,53:43:1539:53:1870:-134.3,0,-107.35	1/1:5:0,5:0:0:5:165:-14.8868,-1.50515,0	0/1:18:7,11:7:248:11:396:-29.7915,0,-17.0613	0/1:4:3,1:3:104:1:36:-2.27658,0,-8.38663	1/1:7:0,7:0:0:7:233:-20.7099,-2.10721,0	1/1:18:0,18:0:0:18:644:-55.7604,-5.41854,0	0/1:169:77,92:77:2743:92:3280:-236.595,0,-191.698	1/1:67:0,67:0:0:67:2385:-207.455,-20.169,0	1/1:38:0,38:0:0:38:1329:-115.519,-11.4391,0	0/1:5:1,4:1:36:4:144:-11.5226,0,-2.06166	0/1:93:40,53:40:1432:53:1881:-136.458,0,-98.8938	1/1:26:0,26:0:0:26:928:-80.3807,-7.82678,0	1/1:58:1,57:1:36:57:2052:-176.674,-13.8929,0	1/1:28:0,28:0:0:28:977:-84.4926,-8.42884,0	1/1:39:0,39:0:0:39:1400:-122.464,-11.7402,0	0/1:85:43,42:43:1539:42:1481:-102.22,0,-111.344	0/1:52:28,24:28:1008:24:860:-59.5772,0,-72.7848	1/1:94:0,94:0:0:94:3301:-286.758,-28.2968,0	1/1:104:0,104:0:0:104:3705:-322.279,-31.3071,0	0/1:77:40,37:40:1440:37:1312:-91.3752,0,-105.604	1/1:92:1,91:1:36:91:3253:-280.674,-24.0965,0	0/1:20:11,9:11:392:9:324:-22.2932,0,-29.2948	1/1:107:0,107:0:0:107:3813:-331.113,-32.2102,0	0/1:41:14,27:14:504:27:968:-71.928,0,-32.8596	0/1:6:3,3:3:108:3:108:-7.93977,0,-7.66862	1/1:91:0,91:0:0:91:3236:-283.837,-27.3937,0	0/1:87:54,33:54:1920:33:1180:-77.5291,0,-145.06	1/1:11:0,11:0:0:11:396:-33.9362,-3.31133,0	0/1:15:8,7:8:284:7:252:-17.7587,0,-21.0992	0/1:66:23,43:23:811:43:1476:-110.578,0,-52.2105	1/1:82:0,82:0:0:82:2940:-255.995,-24.6845,0	0/1:5:3,2:3:108:2:72:-5.14998,0,-8.48192	0/1:131:50,81:50:1792:81:2896:-214.1,0,-120.403	1/1:124:2,122:2:72:122:4377:-374.299,-30.5508,0	0/1:49:27,22:27:968:22:784:-54.3174,0,-71.903	0/1:34:17,17:17:612:17:612:-43.7974,0,-44.7047	0/1:141:67,74:67:2404:74:2645:-189.271,0,-170.941	1/1:96:0,96:0:0:96:3407:-295.118,-28.8989,0	0/1:33:4,29:4:140:29:1021:-80.2294,0,-2.91142	0/1:77:42,35:42:1512:35:1252:-85.4351,0,-109.073	1/1:37:0,37:0:0:37:1332:-116.362,-11.1381,0	0/1:25:17,8:17:612:8:284:-17.1993,0,-47.0597	1/1:124:1,123:1:36:123:4380:-376.673,-33.7294,0	0/1:56:32,24:32:1139:24:860:-58.393,0,-83.6036	1/1:93:0,93:0:0:93:3278:-287.254,-27.9958,0	1/1:123:0,123:0:0:123:4334:-377.642,-37.0267,0	0/1:45:17,28:17:612:28:996:-72.5803,0,-40.6533	1/1:66:1,64:1:36:64:2296:-196.025,-16.3719,0	0/1:26:6,20:6:216:20:720:-55.2103,0,-11.6901	0/1:69:30,39:30:1072:39:1377:-99.5901,0,-73.4663	0/1:70:46,24:46:1648:24:859:-53.0111,0,-124.2	1/1:138:0,138:0:0:138:4926:-430.55,-41.5421,0	1/1:66:0,66:0:0:66:2372:-206.978,-19.868,0	0/1:59:28,31:28:995:31:1112:-78.7698,0,-70.5857	0/1:34:19,15:19:667:15:536:-36.8207,0,-49.1149	1/1:94:1,93:1:36:93:3299:-282.972,-24.73,0	0/1:20:9,11:9:324:11:396:-28.1095,0,-23.0772	0/1:71:35,36:35:1252:36:1277:-89.366,0,-89.1618	1/1:63:0,63:0:0:63:2202:-189.131,-18.9649,0	0/1:48:29,19:29:1040:19:676:-45.4342,0,-77.2375	0/1:115:55,60:55:1964:60:2117:-150.184,0,-139.354	0/1:44:30,14:30:1068:14:496:-30.6147,0,-81.7359	1/1:60:0,60:0:0:60:2129:-184.869,-18.0618,0	1/1:81:0,81:0:0:81:2870:-251.754,-24.3834,0
chr09	23023235	.	AT	AC	133873	PASS	AB=0.515887;ABP=9.42679;AC=138;AF=0.741935;AN=186;AO=6305;CIGAR=1M1X;DP=7742;DPB=7742;DPRA=28.0399;EPP=13694.1;EPPR=3099.53;GTI=6;LEN=1;MEANALT=1.08696;MQM=54.4273;MQMR=59.0456;NS=93;NUMALT=1;ODDS=1.05947;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224246;QR=50665;RO=1426;RPL=6305;RPP=13694.1;RPPR=3099.53;RPR=0;RUN=1;SAF=0;SAP=13694.1;SAR=6305;SRF=0;SRP=3099.53;SRR=1426;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1273:-114.25,-10.8371,0	0/1:83:33,49:33:1162:49:1734:-131.224,0,-79.9846	1/1:167:0,167:0:0:167:5947:-534.438,-50.272,0	1/1:214:0,214:0:0:214:7562:-677.874,-64.4204,0	0/1:10:6,4:6:216:4:144:-10.297,0,-16.7802	0/1:18:6,12:6:203:12:417:-32.4197,0,-13.1823	0/1:99:60,39:60:2158:39:1392:-95.3334,0,-164.683	1/1:155:0,154:0:0:154:5478:-490.779,-46.3586,0	0/1:136:67,69:67:2385:69:2446:-179.066,0,-173.965	1/1:109:0,109:0:0:109:3878:-348.725,-32.8123,0	0/1:29:12,17:12:432:17:608:-46.2967,0,-30.4913	1/1:92:0,92:0:0:92:3276:-294.886,-27.6948,0	1/1:83:0,83:0:0:83:2969:-266.073,-24.9855,0	1/1:41:1,40:1:36:40:1413:-123.782,-8.74396,0	0/1:58:29,29:29:1031:29:1031:-75.588,0,-75.641	0/1:44:27,17:27:970:17:612:-42.1356,0,-74.3724	0/1:38:21,17:21:740:17:612:-43.9235,0,-55.4815	0/1:53:25,28:25:900:28:970:-71.6134,0,-65.3664	1/1:19:0,19:0:0:19:680:-61.5022,-5.71957,0	1/1:94:0,94:0:0:94:3338:-300.308,-28.2968,0	1/1:173:0,173:0:0:173:6035:-542.74,-52.0782,0	0/1:77:55,22:55:1925:22:784:-45.4796,0,-150.213	0/1:105:39,66:39:1385:66:2372:-181.624,0,-93.339	1/1:23:0,23:0:0:23:824:-74.4524,-6.92369,0	1/1:119:0,119:0:0:119:4193:-377.137,-35.8226,0	1/1:202:0,201:0:0:201:7187:-626.593,-60.507,0	0/1:201:92,109:92:3242:109:3893:-289.628,0,-231.492	0/1:44:20,24:20:699:24:864:-64.8017,0,-49.9499	1/1:277:0,277:0:0:277:9844:-860.453,-83.3853,0	1/1:77:0,77:0:0:77:2749:-247.217,-23.1793,0	0/1:86:37,48:37:1302:48:1694:-126.872,0,-91.6767	1/1:7:0,7:0:0:7:248:-22.6542,-2.10721,0	0/1:8:7,1:7:252:1:36:-1.18832,0,-20.6207	0/1:6:1,5:1:36:5:176:-14.3719,0,-1.79209	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:21:-2.09989,-0.30103,0	0/1:168:75,93:75:2651:93:3326:-240.448,0,-187.884	1/1:75:0,75:0:0:75:2606:-234.547,-22.5773,0	1/1:36:0,36:0:0:36:1296:-116.849,-10.8371,0	0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891	0/1:123:59,64:59:2097:64:2304:-170.168,0,-151.936	1/1:33:0,33:0:0:33:1188:-106.791,-9.93399,0	1/1:187:1,186:1:36:186:6586:-588.174,-52.6943,0	1/1:62:0,61:0:0:61:2179:-195.596,-18.3628,0	1/1:56:0,56:0:0:56:2003:-180.279,-16.8577,0	0/1:80:38,42:38:1362:42:1493:-106.662,0,-98.5513	0/1:78:34,44:34:1207:44:1565:-117.466,0,-85.4549	1/1:236:5,231:5:167:231:8203:-721.533,-55.6865,0	1/1:72:0,72:0:0:72:2547:-229.116,-21.6742,0	0/1:88:50,38:50:1782:38:1353:-95.5158,0,-134.169	1/1:42:0,42:0:0:42:1470:-126.525,-12.6433,0	0/1:6:1,5:1:36:5:180:-14.738,0,-1.79209	1/1:99:0,99:0:0:99:3530:-317.747,-29.802,0	0/1:57:22,35:22:773:35:1245:-92.3448,0,-52.6019	0/1:4:1,3:1:36:3:108:-8.86626,0,-2.39415	1/1:127:0,127:0:0:127:4529:-406.428,-38.2308,0	0/1:44:26,18:26:932:18:618:-42.5937,0,-70.9538	1/1:11:0,11:0:0:11:396:-34.8847,-3.31133,0	0/1:16:7,9:7:252:9:305:-22.5154,0,-18.1959	0/1:72:33,39:33:1182:39:1392:-103.779,0,-85.0128	1/1:297:0,297:0:0:297:10629:-955.278,-89.4059,0	0/1:8:3,5:3:108:5:180:-14.136,0,-7.66693	0/1:174:86,88:86:3073:88:3146:-221.185,0,-224.024	1/1:158:2,156:2:72:156:5566:-493.597,-40.726,0	0/1:35:9,26:9:322:26:936:-73.7865,0,-18.7866	0/1:59:38,17:38:1338:17:597:-36.9996,0,-103.801	0/1:114:55,59:55:1951:59:2112:-155.863,0,-141.545	1/1:93:3,90:3:108:90:3197:-277.283,-17.9206,0	1/1:28:0,28:0:0:28:1000:-90.1425,-8.42884,0	0/1:62:16,46:16:570:46:1641:-128.989,0,-32.9691	1/1:32:0,32:0:0:32:1152:-100.924,-9.63296,0	0/1:18:14,4:14:492:4:144:-7.88875,0,-39.193	1/1:123:0,123:0:0:123:4347:-390.447,-37.0267,0	0/1:163:77,86:77:2752:86:3019:-222.412,0,-198.849	1/1:117:0,117:0:0:117:4159:-374.057,-35.2205,0	1/1:96:0,96:0:0:96:3452:-309.945,-28.8989,0	0/1:50:22,28:22:771:28:989:-74.2175,0,-54.6563	1/1:86:0,86:0:0:86:3092:-278.231,-25.8886,0	0/1:18:8,10:8:286:10:360:-27.2909,0,-20.6669	0/1:51:20,31:20:683:31:1082:-82.2882,0,-46.4319	1/1:142:0,142:0:0:142:5069:-455.292,-42.7463,0	1/1:222:0,222:0:0:222:7896:-708.642,-66.8287,0	1/1:73:0,73:0:0:73:2624:-236.167,-21.9752,0	0/1:62:32,30:32:1146:30:1050:-76.0991,0,-84.7861	0/1:64:29,35:29:1020:35:1259:-94.2407,0,-72.8425	1/1:129:0,128:0:0:128:4547:-408.713,-38.5318,0	0/1:20:10,10:10:360:10:356:-26.3476,0,-26.7221	0/1:65:33,32:33:1188:32:1122:-81.6704,0,-87.5318	1/1:70:0,70:0:0:70:2516:-226.231,-21.0721,0	0/1:19:9,10:9:324:10:356:-26.5067,0,-23.7847	0/1:56:30,26:30:1080:26:932:-67.1704,0,-80.6556	0/1:58:37,21:37:1328:21:756:-50.875,0,-102.36	1/1:103:0,102:0:0:102:3624:-324.955,-30.7051,0	1/1:118:0,118:0:0:118:4217:-379.359,-35.5215,0
chr09	23033411	.	T	C	27109.1	PASS	AB=0.538752;ABP=41.0453;AC=47;AF=0.252688;AN=186;AO=1595;CIGAR=1X;DP=7393;DPB=7393;DPRA=0.814511;EPP=3466.51;EPPR=12575.8;GTI=3;LEN=1;MEANALT=1;MQM=59.9718;MQMR=59.9796;NS=93;NUMALT=1;ODDS=2.65081;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56993;QR=207190;RO=5794;RPL=0;RPP=3466.51;RPPR=12575.8;RPR=1595;RUN=1;SAF=1595;SAP=3466.51;SAR=0;SRF=5794;SRP=12584.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:63:29,34:29:1002:34:1216:-90.7817,0,-71.5213	0/0:138:138,0:138:4918:0:0:0,-41.5421,-442.77	0/0:222:221,0:221:7902:0:0:0,-66.5276,-710.842	0/1:34:10,24:10:360:24:864:-67.8475,0,-22.5093	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:132:60,72:60:2144:72:2584:-193.067,0,-153.492	0/0:78:78,0:78:2788:0:0:0,-23.4803,-250.934	0/1:89:41,48:41:1457:48:1707:-127.123,0,-104.632	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/1:23:4,19:4:144:19:684:-54.9666,0,-6.38993	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18	0/0:98:97,0:97:3492:0:0:0,-29.1999,-314.129	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:88:56,32:56:2000:32:1148:-77.1392,0,-153.783	0/1:71:25,46:25:900:46:1648:-127.235,0,-59.9479	0/1:31:14,17:14:500:17:612:-46.0815,0,-36.0042	0/1:34:15,19:15:540:19:684:-51.6553,0,-38.7015	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:169:169,0:169:6049:0:0:0,-50.8741,-544.512	0/0:147:147,0:147:5230:0:0:0,-44.2514,-470.838	0/1:25:8,17:8:288:17:612:-47.8877,0,-18.7417	0/1:78:39,39:39:1400:39:1392:-102.099,0,-102.819	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:193:193,0:193:6903:0:0:0,-58.0988,-621.338	0/1:210:115,95:115:4120:95:3408:-243.718,0,-307.768	0/1:43:21,22:21:756:22:792:-58.5313,0,-55.4229	0/0:249:249,0:249:8920:0:0:0,-74.9565,-802.759	0/0:116:116,0:116:4134:0:0:0,-34.9195,-372.242	0/1:90:42,48:42:1504:48:1724:-128.353,0,-108.562	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:235:119,116:119:4223:116:4161:-303.929,0,-309.506	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	.:.:.:.:.:.:.:.	0/1:133:65,68:65:2328:68:2443:-180.087,0,-169.743	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:37:36,1:36:1284:1:36:0,-7.53983,-112.265	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:64:32,32:32:1152:32:1148:-84.3639,0,-84.7242	0/1:51:31,20:31:1108:20:707:-48.6021,0,-84.6785	0/0:138:134,4:134:4793:4:144:0,-28.2285,-418.211	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/1:98:41,57:41:1468:57:2044:-154.731,0,-102.915	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.355	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.893	0/1:84:29,55:29:1040:55:1968:-152.109,0,-68.6278	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/0:119:119,0:119:4222:0:0:0,-35.8226,-380.159	0/1:32:16,16:16:576:16:557:-40.8226,0,-42.542	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:72:37,35:37:1328:35:1215:-87.9743,0,-98.1481	0/0:99:98,1:98:3501:1:36:0,-26.2037,-311.701	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:167:78,89:78:2785:89:3196:-237.591,0,-200.617	0/0:91:90,1:90:3217:1:36:0,-23.7955,-286.15	0/1:56:23,33:23:824:33:1180:-89.6504,0,-57.6256	0/1:49:20,29:20:720:29:1036:-78.8034,0,-50.3783	0/1:82:36,46:36:1292:46:1595:-119.149,0,-91.8993	0/0:90:88,2:88:3133:2:72:0,-20.256,-275.359	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:60:21,39:21:756:39:1385:-106.885,0,-50.3054	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:150:150,0:150:5349:0:0:0,-45.1545,-481.543	0/1:59:31,28:31:1100:28:1004:-72.9151,0,-81.5495	0/0:71:71,0:71:2514:0:0:0,-21.3731,-226.509	0/0:266:266,0:266:9521:0:0:0,-80.074,-856.846	0/1:17:3,14:3:108:14:500:-40.2187,0,-4.95766	0/0:132:131,1:131:4663:1:36:0,-36.1377,-415.913	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:187:76,111:76:2724:111:3969:-301.107,0,-189.11	0/0:119:117,0:117:4204:0:0:0,-35.2205,-378.253	0/0:189:188,1:188:6737:1:36:0,-53.2964,-602.803	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.548	0/1:73:35,38:35:1237:38:1364:-101.086,0,-89.6571	0/1:55:24,31:24:860:31:1107:-83.3835,0,-61.1652	0/0:147:143,4:143:5109:4:140:0,-31.3068,-447.008	0/1:34:21,13:21:752:13:464:-31.8625,0,-57.7712	0/1:64:33,31:33:1188:31:1112:-81.1254,0,-87.9627	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/1:30:19,11:19:680:11:396:-26.9518,0,-52.4983	0/1:69:33,36:33:1188:36:1277:-94.4611,0,-86.4575	0/1:76:20,56:20:712:56:1970:-154.695,0,-41.5284	0/0:153:152,1:152:5456:1:36:0,-42.4593,-487.568	0/0:118:118,0:118:4221:0:0:0,-35.5215,-380.038
chr09	23185289	.	ATCA	ATCG,GTCG	182471	PASS	AB=0.494038,0.502095;ABP=3.96832,3.12857;AC=143,45;AF=0.760638,0.239362;AN=188;AO=6613,1568;CIGAR=3M1X,1X2M1X;DP=8211;DPB=8211;DPRA=0,0.914862;EPP=13541.2,3295.9;EPPR=9.52472;GTI=2;LEN=1,4;MEANALT=1.81915,2.31373;MQM=59.9846,59.8361;MQMR=60;NS=94;NUMALT=2;ODDS=3.74031;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=236310,54487;QR=102;RO=3;RPL=6517,1555;RPP=13541.2,3295.9;RPPR=9.52472;RPR=96,13;RUN=1,1;SAF=0,0;SAP=14363,3407.88;SAR=6613,1568;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52,0:0:0:52,0:1838,0:-165.378,-15.6536,0,-165.378,-15.6536,-165.378	1/2:74:0,28,46:0:0:28,46:1004,1588:-211.166,-129.273,-120.844,-82.247,0,-68.3996	1/1:239:1,234,1:1:36:234,1:8360,33:-748.816,-67.5021,0,-746.449,-67.7788,-749.085	1/1:279:0,278,0:0:0:278,0:9949,0:-894.99,-83.6863,0,-894.99,-83.6863,-894.99	1/2:115:0,58,57:0:0:58,57:2084,1952:-328.815,-158.795,-141.335,-170.37,0,-153.212	1/2:39:0,17,21:0:0:17,21:599,686:-103.774,-54.9942,-49.8766,-48.7612,0,-42.4395	1/2:45:0,24,21:0:0:24,21:860,735:-130.294,-60.1507,-52.926,-70.4971,0,-64.1755	1/1:93:0,93,0:0:0:93,0:3316,0:-298.659,-27.9958,0,-298.659,-27.9958,-298.659	1/2:68:0,41,26:0:0:41,26:1439,912:-191.319,-74.2095,-61.8672,-117.1,0,-109.274	1/1:81:0,81,0:0:0:81,0:2891,0:-260.426,-24.3834,0,-260.426,-24.3834,-260.426	1/1:60:0,60,0:0:0:60,0:2148,0:-193.587,-18.0618,0,-193.587,-18.0618,-193.587	1/1:86:0,85,0:0:0:85,0:3036,0:-273.111,-25.5876,0,-273.111,-25.5876,-273.111	1/1:68:0,68,0:0:0:68,0:2427,0:-218.685,-20.47,0,-218.685,-20.47,-218.685	1/1:35:0,35,0:0:0:35,0:1247,0:-112.534,-10.5361,0,-112.534,-10.5361,-112.534	1/2:63:0,30,33:0:0:30,33:1080,1136:-180.549,-92.4188,-83.3879,-88.4823,0,-78.5484	1/2:65:0,35,30:0:0:35,30:1252,1035:-186.525,-84.4265,-73.8905,-102.449,0,-93.4181	1/2:19:0,8,11:0:0:8,11:288,380:-54.7252,-31.2197,-28.8115,-23.8592,0,-20.5478	1/2:19:0,8,11:0:0:8,11:284,388:-55.0872,-31.946,-29.5377,-23.4951,0,-20.1838	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:357:0,356,1:0:0:356,1:12726,32:-1144.84,-107.167,0,-1142.26,-104.268,-1141.96	1/1:135:0,135,0:0:0:135,0:4826,0:-434.494,-40.6391,0,-434.494,-40.6391,-434.494	1/2:82:0,31,51:0:0:31,51:1116,1793:-237.361,-146.298,-136.966,-91.4198,0,-76.0672	1/2:77:0,40,36:0:0:40,36:1436,1257:-219.377,-102.235,-90.1937,-117.137,0,-106.3	1/1:87:0,86,0:0:0:86,0:3080,0:-277.147,-25.8886,0,-277.147,-25.8886,-277.147	1/1:54:0,52,0:0:0:52,0:1864,0:-167.68,-15.6536,0,-167.68,-15.6536,-167.68	1/1:191:0,191,0:0:0:191,0:6831,0:-614.861,-57.4967,0,-614.861,-57.4967,-614.861	1/2:267:0,105,162:0:0:105,162:3743,5585:-759.111,-454.002,-422.394,-305.461,0,-256.694	1/2:23:0,11,12:0:0:11,12:396,429:-67.6501,-35.3373,-32.026,-32.6714,0,-29.0591	1/1:232:0,232,0:0:0:232,0:8298,0:-746.825,-69.839,0,-746.825,-69.839,-746.825	1/1:117:1,116,0:1:36:116,0:4130,0:-368.264,-31.6222,0,-368.565,-34.9195,-371.502	1/2:65:0,42,23:0:0:42,23:1495,820:-189.041,-67.1988,-54.5555,-122.199,0,-115.275	1/1:8:0,8,0:0:0:8,0:279,0:-25.4475,-2.40824,0,-25.4475,-2.40824,-25.4475	1/2:35:0,21,14:0:0:21,14:743,482:-100.016,-39.4927,-33.1711,-60.8717,0,-56.6573	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:24:0,24,0:0:0:24,0:855,0:-77.2702,-7.22472,0,-77.2702,-7.22472,-77.2702	1/2:185:0,92,90:0:0:92,90:3287,3164:-525.638,-257.636,-229.942,-268.095,0,-241.002	1/1:89:0,89,0:0:0:89,0:3168,0:-285.316,-26.7917,0,-285.316,-26.7917,-285.316	1/1:35:0,35,0:0:0:35,0:1247,0:-112.534,-10.5361,0,-112.534,-10.5361,-112.534	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:147:0,69,78:0:0:69,78:2455,2713:-420.971,-220.889,-200.118,-200.433,0,-176.953	1/1:44:0,44,0:0:0:44,0:1584,0:-142.852,-13.2453,0,-142.852,-13.2453,-142.852	1/1:193:0,193,0:0:0:193,0:6876,0:-618.909,-58.0988,0,-618.909,-58.0988,-618.909	1/1:51:0,51,0:0:0:51,0:1832,0:-165.161,-15.3525,0,-165.161,-15.3525,-165.161	1/1:57:0,57,0:0:0:57,0:2044,0:-184.232,-17.1587,0,-184.232,-17.1587,-184.232	1/2:108:0,65,43:0:0:65,43:2317,1484:-309.779,-120.906,-101.339,-189.223,0,-176.278	1/1:123:0,122,0:0:0:122,0:4360,0:-392.275,-36.7257,0,-392.275,-36.7257,-392.275	1/1:160:0,159,1:0:0:159,1:5680,36:-510.96,-47.8638,0,-508.023,-44.5665,-507.722	1/1:86:1,85,0:1:30:85,0:3034,0:-270.29,-22.889,0,-270.591,-25.5876,-272.989	1/2:101:0,56,45:0:0:56,45:2012,1556:-290.924,-126.781,-109.923,-164.495,0,-150.949	1/1:65:0,65,0:0:0:65,0:2336,0:-210.499,-19.567,0,-210.499,-19.567,-210.499	1/2:9:0,2,7:0:0:2,7:72,246:-26.2513,-20.3746,-19.7725,-6.23466,0,-4.12745	1/1:149:0,149,0:0:0:149,0:5334,0:-480.192,-44.8535,0,-480.192,-44.8535,-480.192	1/2:52:0,33,19:0:0:33,19:1184,670:-151.481,-54.9013,-44.9674,-96.9343,0,-91.2148	1/2:11:0,7,4:0:0:7,4:252,143:-32.5808,-12.0173,-9.91011,-20.9217,0,-19.7176	1/1:201:0,200,0:0:0:200,0:7119,0:-640.412,-60.206,0,-640.412,-60.206,-640.412	1/2:61:0,25,36:0:0:25,36:892,1275:-176.934,-104.216,-96.6901,-73.07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chr09	23189538	.	G	A	11852	PASS	AB=0.467474;ABP=17.4185;AC=43;AF=0.236264;AN=182;AO=741;CIGAR=1X;DP=3860;DPB=3860;DPRA=0.854932;EPP=1612.07;EPPR=6771.49;GTI=3;LEN=1;MEANALT=1.02222;MQM=59.7544;MQMR=59.983;NS=91;NUMALT=1;ODDS=2.41696;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26577;QR=111433;RO=3117;RPL=741;RPP=1612.07;RPPR=6771.49;RPR=0;RUN=1;SAF=0;SAP=1612.07;SAR=741;SRF=0;SRP=6771.49;SRR=3117;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:47:31,16:31:1112:16:572:-37.6604,0,-86.2429	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/0:87:85,2:85:3037:2:72:0,-19.3529,-266.663	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:27:14,13:14:496:13:464:-33.9697,0,-36.8465	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.458	0/1:27:10,17:10:360:17:612:-47.1944,0,-24.6165	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:37:18,19:18:644:19:680:-50.3877,0,-47.1525	0/1:40:19,21:19:680:21:748:-55.6041,0,-49.488	0/1:42:16,26:16:572:26:924:-70.8298,0,-39.1702	0/1:40:19,21:19:684:21:756:-56.326,0,-49.8491	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.186	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/1:39:24,15:24:860:15:540:-37.193,0,-65.9817	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.219	0/1:70:39,31:39:1388:31:1116:-79.545,0,-104.147	0/1:28:23,5:23:828:5:180:-8.12322,0,-66.4153	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:54:28,26:28:1008:26:924:-67.222,0,-74.7807	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/1:169:84,85:84:3012:85:3056:-224.362,0,-220.437	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.297	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	.:.:.:.:.:.:.:.	0/1:37:26,11:26:921:11:392:-24.4819,0,-72.0671	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.158	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:57:39,18:39:1392:18:648:-41.4932,0,-108.42	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:35:16,19:16:568:19:684:-51.3452,0,-40.9158	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:11:6,5:6:212:5:176:-12.8737,0,-16.1135	0/1:21:18,3:18:644:3:108:-3.75354,0,-51.969	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:148:81,67:81:2888:67:2397:-171.41,0,-215.605	0/0:80:79,0:79:2836:0:0:0,-23.7814,-255.118	0/1:45:28,17:28:1000:17:612:-41.8647,0,-76.769	0/1:8:4,4:4:140:4:144:-10.9019,0,-10.5363	0/1:37:14,23:14:500:23:828:-63.706,0,-34.1981	0/0:39:37,1:37:1328:1:36:0,-8.20069,-116.224	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:16:7,9:7:252:9:324:-24.6847,0,-18.2125	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:59:59,0:59:2085:0:0:0,-17.7608,-187.919	0/1:53:27,26:27:968:26:932:-68.2443,0,-71.4828	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:83:83,0:83:2952:0:0:0,-24.9855,-265.915	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:32:22,10:22:792:10:356:-22.6613,0,-61.9727	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.256	0/1:28:17,11:17:600:11:396:-27.5539,0,-45.9004	0/1:48:25,23:25:885:23:824:-60.0305,0,-65.5171	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/1:29:18,11:18:648:11:396:-27.2482,0,-49.922	0/1:57:32,25:32:1148:25:896:-63.8016,0,-86.4711	0/1:46:18,28:18:632:28:1000:-76.468,0,-43.3594	0/1:24:13,11:13:468:11:396:-28.7557,0,-35.2349	0/1:61:25,36:25:880:36:1292:-98.2186,0,-61.1549	0/1:45:12,33:12:428:33:1188:-93.6789,0,-25.3125	0/0:60:59,1:59:2120:1:36:0,-14.4635,-187.47	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52
chr09	23191946	.	TTCT	GTCT,GTCC	193450	PASS	AB=0.498078,0.497117;ABP=3.11046,3.23565;AC=143,43;AF=0.768817,0.231183;AN=186;AO=5557,1564;CIGAR=1X3M,1X2M1X;DP=7157;DPB=7157.75;DPRA=0,1.01918;EPP=12035.2,3390.51;EPPR=16.0391;GTI=1;LEN=1,4;MEANALT=1.88172,2.32075;MQM=59.9816,59.8779;MQMR=60;NS=93;NUMALT=2;ODDS=0.998375;PAIRED=0,0;PAIREDR=0;PAO=1,2;PQA=34,70;PQR=0;PRO=0;QA=198273,54314;QR=193;RO=6;RPL=3524,968;RPP=871.709,195.144;RPPR=4.45795;RPR=2033,596;RUN=1,1;SAF=3526,969;SAP=876.376,197.215;SAR=2031,595;SRF=4;SRP=4.45795;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21,0:0:0:21,0:748,0:-67.6453,-6.32163,0,-67.6453,-6.32163,-67.6453	1/2:74:1,42,31:1:36:42,31:1512,1080:-207.955,-84.8776,-75.1721,-120.434,0,-114.04	1/1:56:0,56,0:0:0:56,0:1996,0:-179.913,-16.8577,0,-179.913,-16.8577,-179.913	1/1:104:0,103,1:0:0:103,1:3664,36:-329.601,-31.0061,0,-326.664,-27.7088,-326.363	1/2:37:0,21,16:0:0:21,16:756,568:-108.319,-46.6307,-40.3091,-62.0456,0,-57.2291	1/2:38:0,16,22:0:0:16,22:576,754:-108.559,-61.5526,-56.7362,-47.3585,0,-40.7358	1/2:64:0,29,34:0:0:29,34:1021,1198:-180.726,-97.6068,-88.8769,-83.188,0,-72.953	1/1:69:0,69,0:0:0:69,0:2460,0:-221.654,-20.7711,0,-221.654,-20.7711,-221.654	1/2:75:0,34,41:0:0:34,41:1197,1407:-211.925,-114.58,-104.345,-97.6924,0,-85.3502	1/1:61:0,60,1:0:0:60,1:2160,36:-194.201,-18.0618,0,-191.263,-14.7646,-190.962	1/1:112:0,111,1:0:0:111,1:3975,36:-357.309,-33.4143,0,-354.372,-30.1171,-354.071	1/1:153:0,152,0:0:0:152,0:5428,0:-488.349,-45.7566,0,-488.349,-45.7566,-488.349	1/1:155:1,154,0:1:24:154,0:5461,0:-489.221,-44.2598,0,-489.522,-46.3586,-491.38	1/1:256:1,254,0:1:36:254,0:9049,0:-810.79,-73.5242,0,-811.091,-76.4616,-814.029	1/2:126:0,62,64:0:0:62,64:2226,2227:-363.014,-181.427,-162.763,-181.94,0,-162.674	1/2:118:0,64,52:0:0:64,52:2296,1787:-332.381,-145.094,-125.828,-187.382,0,-171.729	1/2:133:0,75,57:0:0:75,57:2663,1905:-371.166,-154.173,-131.595,-216.977,0,-199.818	1/2:97:0,45,51:0:0:45,51:1608,1747:-273.004,-141.89,-128.344,-131.211,0,-115.858	1/1:52:0,52,0:0:0:52,0:1872,0:-168.759,-15.6536,0,-168.759,-15.6536,-168.759	1/1:48:0,47,1:0:0:47,1:1680,35:-151.137,-14.1484,0,-148.29,-10.9508,-147.988	1/1:77:1,76,0:1:36:76,0:2736,0:-242.884,-19.581,0,-243.185,-22.8783,-246.122	1/2:22:0,7,15:0:0:7,15:252,527:-63.8092,-43.2445,-41.1373,-20.9217,0,-16.4063	1/2:72:0,26,46:0:0:26,46:932,1587:-205.288,-129.269,-121.443,-76.3721,0,-62.5247	1/1:84:0,84,0:0:0:84,0:3008,0:-270.951,-25.2865,0,-270.951,-25.2865,-270.951	1/1:47:0,47,0:0:0:47,0:1673,0:-150.856,-14.1484,0,-150.856,-14.1484,-150.856	1/1:122:0,121,0:0:0:121,0:4309,0:-387.687,-36.4246,0,-387.687,-36.4246,-387.687	1/2:143:0,79,64:0:0:79,64:2828,2251:-414.206,-183.583,-159.801,-230.978,0,-211.712	1/2:66:0,43,23:0:0:43,23:1544,797:-191.082,-65.1238,-52.1795,-126.309,0,-119.385	1/1:92:0,92,0:0:0:92,0:3290,0:-296.319,-27.6948,0,-296.319,-27.6948,-296.319	1/1:47:0,45,1:0:0:45,1:1607,35:-144.593,-13.5464,0,-141.746,-10.6736,-141.444	1/2:71:0,27,44:0:0:27,44:958,1539:-203.61,-125.555,-117.427,-78.4073,0,-65.1619	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/2:4:0,2,2:0:0:2,2:72,71:-12.0173,-6.14,-5.53794,-6.23466,0,-5.6326	1/1:6:0,6,0:0:0:6,0:208,0:-19.0591,-1.80618,0,-19.0591,-1.80618,-19.0591	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:293:0,142,149:0:0:142,149:5080,5196:-836.92,-422.674,-379.928,-414.337,0,-369.484	1/1:36:0,36,0:0:0:36,0:1284,0:-115.863,-10.8371,0,-115.863,-10.8371,-115.863	1/1:98:0,96,1:0:0:96,1:3417,34:-307.423,-28.8989,0,-304.665,-26.1209,-304.364	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:79:0,20,58:0:0:20,58:711,2000:-220.532,-162.589,-156.569,-58.0686,0,-40.6089	1/1:49:0,49,0:0:0:49,0:1756,0:-158.324,-14.7505,0,-158.324,-14.7505,-158.324	1/1:52:0,51,0:0:0:51,0:1808,0:-162.678,-15.3525,0,-162.678,-15.3525,-162.678	1/1:137:0,136,0:0:0:136,0:4860,0:-437.152,-40.9401,0,-437.152,-40.9401,-437.152	1/1:88:0,87,0:0:0:87,0:3095,0:-278.524,-26.1896,0,-278.524,-26.1896,-278.524	1/2:42:0,24,18:0:0:24,18:860,637:-122.38,-52.2388,-45.014,-70.4971,0,-65.0786	1/1:45:0,44,0:0:0:44,0:1576,0:-141.918,-13.2453,0,-141.918,-13.2453,-141.918	1/1:63:0,62,0:0:0:62,0:2206,0:-198.504,-18.6639,0,-198.504,-18.6639,-198.504	1/1:43:0,42,1:0:0:42,1:1500,36:-134.935,-12.6433,0,-131.997,-9.34602,-131.696	1/2:78:0,41,35:0:0:41,35:1468,1197:-216.95,-97.2231,-84.8808,-119.805,0,-109.269	1/1:52:0,52,0:0:0:52,0:1843,0:-166.149,-15.6536,0,-166.149,-15.6536,-166.149	.:.:.:.:.:.:.:.	1/1:47:0,47,0:0:0:47,0:1656,0:-149.325,-14.1484,0,-149.325,-14.1484,-149.325	1/2:23:0,18,5:0:0:18,5:633,180:-66.5654,-15.0469,-9.62837,-51.8765,0,-50.3714	1/2:4:0,3,1:0:0:3,1:104,36:-11.7405,-3.29724,-2.39415,-8.79971,0,-8.49868	1/1:67:0,67,0:0:0:67,0:2368,0:-213.376,-20.169,0,-213.376,-20.169,-213.376	1/2:29:0,23,6:0:0:23,6:824,210:-84.644,-17.4359,-10.5122,-67.5596,0,-65.7534	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,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chr09	23197804	.	T	C	27486.6	PASS	AB=0.594801;ABP=207.222;AC=44;AF=0.236559;AN=186;AO=1567;CIGAR=1X;DP=6142;DPB=6142;DPRA=0.956871;EPP=3405.71;EPPR=9937.5;GTI=0;LEN=1;MEANALT=1;MQM=59.9847;MQMR=59.9941;NS=93;NUMALT=1;ODDS=1.35026;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55917;QR=163178;RO=4575;RPL=1567;RPP=3405.71;RPPR=9937.5;RPR=0;RUN=1;SAF=0;SAP=3405.71;SAR=1567;SRF=0;SRP=9937.5;SRR=4575;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:106:37,69:37:1317:69:2465:-190.193,0,-86.9207	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:71:71,0:71:2510:0:0:0,-21.3731,-226.15	0/1:30:7,23:7:252:23:828:-65.8132,0,-13.9981	0/1:38:19,19:19:669:19:684:-50.4153,0,-49.0948	0/1:104:52,52:52:1838:52:1851:-135.562,0,-134.389	0/0:125:125,0:125:4421:0:0:0,-37.6287,-398.058	0/1:83:38,45:38:1368:45:1612:-120.385,0,-98.4353	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/1:46:15,31:15:540:31:1093:-84.8303,0,-35.0892	0/1:29:5,24:5:180:24:860:-68.992,0,-7.82219	0/1:59:14,45:14:500:45:1608:-127.249,0,-27.5754	0/1:60:18,42:18:644:42:1508:-117.953,0,-40.2288	0/0:19:19,0:19:654:0:0:0,-5.71957,-59.1776	0/0:112:112,0:112:4017:0:0:0,-33.7154,-361.716	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.253	0/1:75:26,49:26:921:49:1764:-136.467,0,-60.628	0/1:62:19,43:19:684:43:1544:-120.589,0,-43.2265	0/0:89:89,0:89:3181:0:0:0,-26.7917,-286.512	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/0:192:190,2:190:6790:2:72:0,-50.961,-604.333	0/1:152:65,87:65:2306:87:3098:-233.288,0,-162.041	0/1:15:3,12:3:93:12:428:-34.3434,0,-4.16128	0/0:132:132,0:132:4664:0:0:0,-39.736,-419.902	0/0:108:106,2:106:3778:2:72:0,-25.6745,-333.38	0/1:95:45,50:45:1620:50:1800:-133.684,0,-117.492	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	.:.:.:.:.:.:.:.	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:104:37,67:37:1313:67:2401:-185.038,0,-87.1626	0/0:136:136,0:136:4813:0:0:0,-40.9401,-433.322	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:73:33,40:33:1184:40:1436:-107.562,0,-84.8931	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.989	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/1:52:25,27:25:896:27:972:-72.1443,0,-65.3068	0/0:55:55,0:55:1942:0:0:0,-16.5566,-175.052	0/0:103:102,1:102:3660:1:36:0,-27.4078,-326.005	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.797	0/1:81:48,33:48:1724:33:1162:-80.5002,0,-131.062	0/0:111:111,0:111:3962:0:0:0,-33.4143,-356.768	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:103:103,0:103:3689:0:0:0,-31.0061,-332.211	0/1:75:38,37:38:1334:37:1305:-95.1722,0,-97.7786	0/1:18:8,10:8:273:10:360:-27.3258,0,-19.4816	0/0:54:54,0:54:1872:0:0:0,-16.2556,-168.751	0/1:36:15,21:15:536:21:752:-57.1692,0,-37.7377	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:115:52,63:52:1845:63:2215:-164.992,0,-131.71	0/0:100:98,2:98:3524:2:72:0,-23.2663,-310.531	0/1:12:8,4:8:280:4:144:-9.70126,0,-21.9269	0/1:129:53,76:53:1880:76:2713:-205.579,0,-130.643	0/0:140:140,0:140:4987:0:0:0,-42.1442,-448.975	0/1:93:30,63:30:1076:63:2253:-175.035,0,-69.1571	0/1:32:19,13:19:684:13:464:-32.4645,0,-52.2574	0/1:90:30,60:30:1065:60:2142:-165.955,0,-69.0671	0/0:138:138,0:138:4904:0:0:0,-41.5421,-441.508	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/1:61:38,23:38:1360:23:803:-54.224,0,-104.338	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.985	0/1:35:15,20:15:536:20:705:-53.223,0,-38.0388	0/0:82:82,0:82:2922:0:0:0,-24.6845,-263.212	0/1:62:29,33:29:1044:33:1188:-88.5647,0,-75.6109	0/0:140:140,0:140:5017:0:0:0,-42.1442,-451.674	0/0:115:115,0:115:4110:0:0:0,-34.6184,-370.082	0/1:63:21,42:21:752:42:1500:-116.33,0,-49.0414	0/0:105:103,2:103:3677:2:72:0,-24.7714,-324.295	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:74:42,32:42:1512:32:1107:-77.6544,0,-114.098	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:144:144,0:144:5123:0:0:0,-43.3483,-461.21	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:58:17,41:17:612:41:1461:-114.324,0,-37.9537	0/1:42:17,25:17:612:25:900:-68.6778,0,-42.7702	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.646	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:43:15,28:15:540:28:1000:-77.3711,0,-35.9922	0/1:49:13,36:13:468:36:1296:-102.193,0,-27.7092	0/1:64:21,43:21:752:43:1533:-118.995,0,-48.7403	0/1:102:38,64:38:1353:64:2270:-173.854,0,-91.3633	0/1:36:4,32:4:144:32:1144:-92.4324,0,-2.47654	0/0:65:64,1:64:2295:1:36:0,-15.9687,-203.212	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868
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chr09	23254062	.	G	A	92831	PASS	AB=0.471193;ABP=22.6524;AC=141;AF=0.758065;AN=186;AO=4322;CIGAR=1X;DP=5775;DPB=5775;DPRA=0;EPP=9086.57;EPPR=3097.65;GTI=0;LEN=1;MEANALT=1;MQM=59.9933;MQMR=59.9794;NS=93;NUMALT=1;ODDS=2.02982;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154402;QR=52030;RO=1453;RPL=38;RPP=9060.95;RPPR=3106.26;RPR=4284;RUN=1;SAF=4319;SAP=9362.07;SAR=3;SRF=1452;SRP=3149.48;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:28:19,9:19:684:9:320:-20.7135,0,-53.4615	1/1:53:0,53:0:0:53:1888:-170.198,-15.9546,0	1/1:86:0,86:0:0:86:3069:-276.438,-25.8886,0	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:52:30,22:30:1072:22:788:-55.5912,0,-81.1389	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:79:39,40:39:1389:40:1436:-105.756,0,-101.526	1/1:42:0,42:0:0:42:1481:-133.582,-12.6433,0	1/1:111:0,111:0:0:111:3984:-358.749,-33.4143,0	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	1/1:131:0,131:0:0:131:4688:-422.078,-39.4349,0	0/1:70:37,33:37:1309:33:1184:-85.7962,0,-97.0351	0/1:98:48,50:48:1716:50:1785:-131.431,0,-125.225	0/1:58:30,28:30:1080:28:1008:-73.5766,0,-80.0535	0/1:58:28,30:28:1000:30:1065:-78.7009,0,-72.8556	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	1/1:65:1,64:1:36:64:2289:-202.671,-15.9687,0	1/1:60:0,60:0:0:60:2140:-192.868,-18.0618,0	0/1:74:52,22:52:1864:22:792:-49.3295,0,-145.763	0/1:63:36,27:36:1292:27:968:-68.4725,0,-97.6189	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	1/1:54:0,54:0:0:54:1923:-173.345,-16.2556,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	0/1:190:107,83:107:3836:83:2968:-210.157,0,-288.238	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.6158	1/1:129:1,128:1:36:128:4569:-407.776,-35.2346,0	1/1:45:0,45:0:0:45:1593:-143.658,-13.5464,0	0/1:42:18,24:18:648:24:860:-65.0786,0,-46.0086	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:211:103,108:103:3700:108:3876:-285.517,0,-269.684	1/1:17:0,17:0:0:17:596:-53.9664,-5.11751,0	1/1:92:0,92:0:0:92:3296:-296.858,-27.6948,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:58:35,23:35:1252:23:824:-57.0236,0,-95.5253	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:72:1,71:1:32:71:2531:-224.84,-18.4748,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:59:0,59:0:0:59:2086:-188.007,-17.7608,0	0/1:61:37,24:37:1324:24:860:-59.359,0,-101.099	1/1:51:0,51:0:0:51:1787:-161.107,-15.3525,0	1/1:43:0,43:0:0:43:1529:-137.901,-12.9443,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:51:19,32:19:680:32:1146:-88.0969,0,-46.1766	1/1:110:0,110:0:0:110:3898:-351.014,-33.1133,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:57:0,57:0:0:57:2021:-182.161,-17.1587,0	0/1:32:14,18:14:495:18:647:-48.9287,0,-35.2501	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:37:17,20:17:612:20:712:-53.2685,0,-44.2753	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:71:45,26:45:1604:26:932:-62.8257,0,-123.277	1/1:139:3,136:3:108:136:4877:-429.006,-31.768,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:88:63,25:63:2256:25:896:-54.4697,0,-176.812	1/1:53:0,53:0:0:53:1888:-170.198,-15.9546,0	0/1:53:25,28:25:900:28:993:-73.7279,0,-65.3664	0/1:28:11,17:11:392:17:599:-45.8084,0,-27.1912	0/1:59:24,35:24:848:35:1236:-93.7829,0,-58.8789	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:74:3,71:3:108:71:2536:-218.416,-12.2011,0	0/1:19:5,14:5:180:14:496:-39.2547,0,-10.8325	1/1:48:0,48:0:0:48:1716:-154.725,-14.4494,0	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	0/1:50:29,21:29:1044:21:756:-53.3157,0,-79.2233	1/1:104:0,104:0:0:104:3706:-333.74,-31.3071,0	1/1:72:0,72:0:0:72:2571:-231.64,-21.6742,0	0/1:67:39,28:39:1404:28:992:-69.4254,0,-106.49	1/1:37:3,34:3:93:34:1216:-101.07,-2.46138,0	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/1:29:18,11:18:648:11:396:-27.2529,0,-49.922	1/1:52:0,52:0:0:52:1841:-165.968,-15.6536,0	1/1:74:0,74:0:0:74:2593:-233.57,-22.2762,0	1/1:73:0,73:0:0:73:2604:-234.609,-21.9752,0	0/1:111:56,55:56:2012:55:1980:-145.06,0,-147.939	0/1:40:22,18:22:788:18:648:-46.6107,0,-59.2036	1/1:159:0,159:0:0:159:5673:-510.691,-47.8638,0	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/1:85:52,33:52:1872:33:1184:-81.2808,0,-143.172	0/1:90:44,46:44:1561:46:1648:-121.516,0,-113.687	0/1:116:52,64:52:1859:64:2296:-171.982,0,-132.669	0/1:282:124,158:124:4448:158:5664:-424.988,0,-315.599	0/1:109:67,42:67:2400:42:1508:-103.202,0,-183.445	1/1:24:0,24:0:0:24:841:-76.0064,-7.22472,0	1/1:108:0,108:0:0:108:3872:-348.674,-32.5112,0
chr09	23254089	.	C	T	23868.1	PASS	AB=0.525636;ABP=18.4861;AC=45;AF=0.241935;AN=186;AO=1431;CIGAR=1X;DP=5763;DPB=5763;DPRA=0.974264;EPP=3110.39;EPPR=9401.14;GTI=0;LEN=1;MEANALT=1.04;MQM=59.979;MQMR=59.9982;NS=93;NUMALT=1;ODDS=2.84926;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50709;QR=153251;RO=4328;RPL=1431;RPP=3110.39;RPPR=9401.14;RPR=0;RUN=1;SAF=1431;SAP=3110.39;SAR=0;SRF=4328;SRP=9401.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1445:0:0:0,-12.3422,-130.344	0/1:28:9,19:9:315:19:676:-52.7392,0,-20.2584	0/0:52:52,0:52:1840:0:0:0,-15.6536,-165.88	0/0:88:88,0:88:3130:0:0:0,-26.4906,-281.926	0/1:14:4,9:4:144:9:309:-23.87,0,-9.0404	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	0/1:48:20,28:20:716:28:980:-74.0635,0,-50.3183	0/0:25:25,0:25:872:0:0:0,-7.52575,-78.7936	0/1:77:39,38:39:1391:38:1364:-99.8814,0,-102.309	0/0:39:39,0:39:1372:0:0:0,-11.7402,-123.776	0/0:111:111,0:111:3923:0:0:0,-33.4143,-353.264	0/0:103:103,0:103:3648:0:0:0,-31.0061,-328.528	0/0:100:100,0:100:3545:0:0:0,-30.103,-319.26	0/0:128:128,0:128:4536:0:0:0,-38.5318,-408.407	0/1:67:33,34:33:1161:34:1193:-87.5036,0,-84.6257	0/1:101:52,49:52:1839:49:1756:-127.92,0,-135.386	0/1:57:28,29:28:983:29:1017:-74.6811,0,-71.6238	0/1:55:28,27:28:986:27:956:-69.7991,0,-72.4955	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.831	0/0:68:67,1:67:2359:1:36:0,-16.8718,-208.969	0/0:62:62,0:62:2183:0:0:0,-18.6639,-196.734	0/1:75:23,52:23:815:52:1825:-141.949,0,-51.0935	0/1:60:26,34:26:905:34:1211:-91.2337,0,-63.701	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:68:68,0:68:2402:0:0:0,-20.47,-216.434	0/1:191:82,109:82:2895:109:3904:-294.052,0,-203.289	0/1:28:12,16:12:415:16:572:-43.2543,0,-29.2514	0/0:130:129,1:129:4579:1:36:0,-35.5356,-408.675	0/0:44:43,0:43:1532:0:0:0,-12.9443,-137.852	0/1:43:23,20:23:824:20:712:-51.4624,0,-61.539	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	.:.:.:.:.:.:.:.	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/1:213:108,105:108:3819:105:3709:-269.894,0,-279.786	0/0:17:17,0:17:596:0:0:0,-5.11751,-53.9678	0/0:94:94,0:94:3351:0:0:0,-28.2968,-301.807	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:56:21,35:21:744:35:1241:-95.1348,0,-50.4266	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.607	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:80:80,0:80:2828:0:0:0,-24.0824,-254.759	0/0:58:58,0:58:2036:0:0:0,-17.4597,-183.51	0/1:60:24,36:24:842:36:1292:-98.522,0,-58.0353	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/0:40:39,1:39:1374:1:36:0,-8.44292,-120.359	0/0:47:47,0:47:1660:0:0:0,-14.1484,-149.685	0/1:51:33,18:33:1180:18:644:-42.9381,0,-91.1555	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511	0/1:8:5,3:5:180:3:99:-6.82834,0,-14.1438	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/1:32:18,14:18:639:14:485:-34.344,0,-48.2053	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/0:26:26,0:26:900:0:0:0,-7.82678,-81.3113	0/1:37:20,17:20:696:17:584:-41.7435,0,-51.8215	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:71:26,45:26:914:45:1583:-121.387,0,-61.2015	0/0:137:137,0:137:4847:0:0:0,-41.2411,-436.387	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:90:28,62:28:999:62:2211:-172.16,0,-63.1318	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/1:51:27,24:27:936:24:852:-61.6479,0,-69.1977	0/1:28:17,11:17:590:11:392:-27.1912,0,-44.9953	0/1:63:38,25:38:1345:25:888:-61.2741,0,-102.383	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:75:74,1:74:2631:1:36:0,-18.979,-233.439	0/1:18:14,4:14:481:4:144:-7.89508,0,-38.1965	0/0:49:49,0:49:1722:0:0:0,-14.7505,-155.264	0/1:18:12,6:12:419:6:212:-14.0063,0,-32.6241	0/0:56:56,0:56:1969:0:0:0,-16.8577,-177.481	0/1:51:22,29:22:788:29:1040:-78.5618,0,-55.8923	0/0:101:101,0:101:3587:0:0:0,-30.404,-323.036	0/0:72:71,0:71:2527:0:0:0,-21.3731,-227.322	0/1:62:27,34:27:947:34:1201:-89.6712,0,-66.8214	0/0:37:35,2:35:1235:2:72:0,-4.30139,-104.617	0/1:13:3,10:3:108:10:352:-28.1048,0,-6.16178	0/1:29:11,18:11:396:18:644:-49.5607,0,-27.2529	0/0:53:53,0:53:1849:0:0:0,-15.9546,-166.685	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.92	0/0:74:74,0:74:2610:0:0:0,-22.2762,-235.149	0/1:111:56,55:56:1994:55:1952:-142.542,0,-146.318	0/1:40:18,22:18:648:22:779:-58.3909,0,-46.6107	0/0:156:156,0:156:5518:0:0:0,-46.9607,-496.75	0/1:25:11,14:11:379:14:488:-36.7247,0,-26.9148	0/1:86:34,52:34:1182:52:1852:-141.071,0,-80.7917	0/1:90:46,44:46:1640:44:1550:-112.698,0,-120.796	0/1:114:63,51:63:2243:51:1784:-126.522,0,-167.816	0/1:281:157,124:157:5560:124:4388:-310.506,0,-415.939	0/1:104:41,63:41:1459:63:2224:-169.118,0,-100.298	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:108:108,0:108:3809:0:0:0,-32.5112,-343.011
chr09	23284619	.	A	T	17080.3	PASS	AB=0.47619;ABP=13.7643;AC=42;AF=0.228261;AN=184;AO=1042;CIGAR=1X;DP=5597;DPB=5597;DPRA=0.79143;EPP=2257.01;EPPR=9818.19;GTI=1;LEN=1;MEANALT=1.04651;MQM=59.9539;MQMR=59.9989;NS=92;NUMALT=1;ODDS=7.95714;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37395;QR=163190;RO=4552;RPL=1041;RPP=2257.01;RPPR=9809.53;RPR=1;RUN=1;SAF=1042;SAP=2265.68;SAR=0;SRF=4551;SRP=9878.87;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:72:31,41:31:1112:41:1476:-111.462,0,-78.7172	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.77	0/0:148:148,0:148:5305:0:0:0,-44.5524,-477.582	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/1:55:37,18:37:1324:18:648:-42.0952,0,-102.905	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:107:70,37:70:2520:37:1324:-87.2381,0,-194.841	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692	0/0:52:52,0:52:1857:0:0:0,-15.6536,-167.408	0/1:54:25,29:25:900:29:1044:-78.0192,0,-65.0654	0/1:44:21,23:21:756:23:824:-61.238,0,-55.1219	0/1:37:23,14:23:828:14:495:-33.7449,0,-63.706	0/1:21:8,13:8:284:13:468:-36.138,0,-19.5817	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:127:127,0:127:4530:0:0:0,-38.2308,-407.865	0/1:29:15,14:15:536:14:504:-36.9682,0,-39.8449	0/1:48:25,23:25:900:23:828:-60.3947,0,-66.8716	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:131:131,0:131:4697:0:0:0,-39.4349,-422.887	0/1:154:78,76:78:2796:76:2713:-198.054,0,-205.521	0/1:25:17,8:17:612:8:288:-18.7417,0,-47.8877	0/0:187:187,0:187:6708:0:0:0,-56.2926,-603.794	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/1:80:47,33:47:1688:33:1188:-83.1462,0,-128.125	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:123:63,60:63:2264:60:2154:-157.087,0,-166.996	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	.:.:.:.:.:.:.:.	0/1:84:40,44:40:1440:44:1580:-117.205,0,-104.611	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:106:106,0:106:3797:0:0:0,-31.9092,-341.926	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:79:51,28:51:1832:28:1008:-67.255,0,-141.379	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/0:103:103,0:103:3666:0:0:0,-31.0061,-330.142	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/1:62:25,37:25:896:37:1332:-101.519,0,-62.2965	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:95:95,0:95:3405:0:0:0,-28.5978,-306.662	0/1:40:16,24:16:572:24:864:-66.0414,0,-39.7722	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:92:92,0:92:3278:0:0:0,-27.6948,-295.237	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:70:41,29:41:1472:29:1040:-72.8409,0,-111.704	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:162:78,84:78:2788:84:3012:-222.544,0,-202.394	0/0:118:118,0:118:4244:0:0:0,-35.5215,-382.137	0/1:38:29,9:29:1036:9:324:-18.0667,0,-82.1148	0/1:31:21,10:21:756:10:352:-22.6863,0,-59.0353	0/1:82:45,37:45:1578:37:1313:-93.7852,0,-117.622	0/0:110:107,2:107:3848:2:72:0,-26.3088,-339.69	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:39:29,10:29:1044:10:360:-21.0041,0,-82.5346	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	0/0:77:77,0:77:2742:0:0:0,-23.1793,-247.019	0/1:88:37,51:37:1328:51:1836:-138.985,0,-93.3316	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/0:136:136,0:136:4888:0:0:0,-40.9401,-440.07	0/1:48:29,19:29:1029:19:684:-47.4327,0,-78.4717	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:61:29,32:29:1040:32:1148:-85.267,0,-75.5515	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:97:97,0:97:3454:0:0:0,-29.1999,-311.07	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:54:27,27:27:972:27:964:-70.8212,0,-71.5419	0/1:36:18,18:18:648:18:648:-47.8148,0,-47.8148	0/0:98:97,0:97:3484:0:0:0,-29.1999,-313.41	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/1:41:14,27:14:504:27:968:-75.0951,0,-33.3559	0/1:52:29,22:29:1036:22:792:-55.8933,0,-77.8417	0/1:26:12,14:12:417:14:504:-37.8713,0,-30.0334	0/1:60:23,37:23:824:37:1332:-102.121,0,-56.4215	0/1:46:21,25:21:756:25:896:-67.113,0,-54.5198	0/0:127:127,0:127:4564:0:0:0,-38.2308,-410.924	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357
chr09	23287901	.	C	T	27181	PASS	AB=0.517628;ABP=9.51751;AC=45;AF=0.239362;AN=188;AO=1254;CIGAR=1X;DP=5576;DPB=5576;DPRA=0.90919;EPP=681.597;EPPR=2109.73;GTI=1;LEN=1;MEANALT=1.04082;MQM=59.5925;MQMR=59.9555;NS=94;NUMALT=1;ODDS=0.207434;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44865;QR=154387;RO=4319;RPL=314;RPP=681.597;RPPR=2105.62;RPR=940;RUN=1;SAF=1254;SAP=2726.04;SAR=0;SRF=4318;SRP=9372.92;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:17,0:17:612:0:0:0,-5.11751,-55.1583	0/1:42:20,22:20:716:22:779:-57.7887,0,-52.1245	0/0:82:82,0:82:2914:0:0:0,-24.6845,-262.495	0/0:116:116,0:116:4134:0:0:0,-34.9195,-372.225	0/1:35:18,17:18:635:17:608:-44.5053,0,-46.9363	0/1:35:14,21:14:500:21:747:-57.0131,0,-34.8001	0/1:83:36,47:36:1284:47:1673:-125.843,0,-90.8779	0/0:68:68,0:68:2407:0:0:0,-20.47,-216.872	0/1:73:39,34:39:1387:34:1220:-88.1274,0,-103.153	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.93	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.043	0/0:83:83,0:83:2975:0:0:0,-24.9855,-267.979	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.083	0/1:41:21,20:21:756:20:720:-52.785,0,-56.025	0/1:46:20,26:20:716:26:921:-69.3578,0,-50.9203	0/1:35:20,15:20:716:15:532:-37.6761,0,-54.2317	0/1:25:15,10:15:540:10:352:-24.4924,0,-41.4108	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:93:93,0:93:3310:0:0:0,-27.9958,-298.118	0/0:86:86,0:86:3079:0:0:0,-25.8886,-277.302	0/1:43:12,31:12:432:31:1112:-87.4461,0,-26.2769	0/1:78:40,38:40:1436:38:1345:-97.8677,0,-106.057	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.074	0/0:125:125,0:125:4462:0:0:0,-37.6287,-401.75	0/1:112:55,57:55:1980:57:2037:-149.853,0,-144.759	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/0:152:152,0:152:5404:0:0:0,-45.7566,-486.493	0/0:82:80,2:80:2871:2:72:0,-17.8477,-251.789	0/1:121:51,69:51:1824:69:2472:-186.11,0,-128.134	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:123:64,59:64:2296:59:2105:-152.615,0,-169.874	0/0:87:87,0:87:3107:0:0:0,-26.1896,-279.857	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.9	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:89:44,45:44:1584:45:1616:-118.893,0,-116.06	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.434	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:73:35,38:35:1252:38:1368:-101.446,0,-91.0099	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.916	0/0:72:72,0:72:2554:0:0:0,-21.6742,-230.11	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.759	0/1:78:41,37:41:1472:37:1316:-95.2422,0,-109.296	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/1:44:22,22:22:792:22:792:-58.0897,0,-58.3604	0/1:34:16,18:16:576:18:644:-48.0556,0,-41.94	0/0:90:89,1:89:3179:1:36:0,-23.4944,-282.736	0/1:38:16,22:16:572:22:784:-59.4448,0,-40.3743	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:11:5,6:5:180:6:216:-16.4773,0,-13.2407	0/1:65:33,32:33:1184:32:1152:-84.3796,0,-87.3014	0/0:96:95,1:95:3407:1:36:0,-25.3006,-303.231	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:95:41,53:41:1468:53:1908:-143.306,0,-103.759	0/0:95:93,2:93:3327:2:72:0,-21.7611,-292.811	0/1:47:22,25:22:779:25:892:-66.4383,0,-56.2837	0/1:37:14,23:14:504:23:820:-62.9706,0,-34.56	0/1:131:55,76:55:1968:76:2721:-205.611,0,-137.96	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.082	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:46:15,31:15:536:31:1107:-86.0925,0,-34.7274	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:87:87,0:87:3106:0:0:0,-26.1896,-279.762	0/1:57:25,32:25:900:32:1148:-86.4698,0,-64.1623	0/0:116:116,0:116:4114:0:0:0,-34.9195,-370.441	0/0:119:119,0:119:4249:0:0:0,-35.8226,-382.482	0/1:53:26,27:26:932:27:972:-71.834,0,-68.2443	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:77:25,52:25:896:52:1871:-145.45,0,-57.781	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.636	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:54:24,30:24:860:30:1080:-81.2553,0,-61.4662	0/1:52:24,28:24:864:28:1006:-75.1939,0,-62.429	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/1:61:43,18:43:1528:18:648:-40.2891,0,-119.45	0/1:62:31,31:31:1103:31:1108:-81.3671,0,-80.9159	0/1:38:24,14:24:864:14:504:-34.259,0,-66.6434	0/1:126:80,46:80:2841:46:1626:-108.663,0,-217.998	0/1:64:26,38:26:927:38:1359:-103.333,0,-64.4814	0/0:76:76,0:76:2701:0:0:0,-22.8783,-243.333	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645
chr09	23287913	.	C	G,A	118801	PASS	AB=0.473466,0.526534;ABP=17.7605,17.7605;AC=143,45;AF=0.760638,0.239362;AN=188;AO=4216,1275;CIGAR=1X,1X;DP=5493;DPB=5493;DPRA=0,0.913688;EPP=9157.94,2771.64;EPPR=0;GTI=1;LEN=1,1;MEANALT=1.53191,2;MQM=59.9473,59.5765;MQMR=0;NS=94;NUMALT=2;ODDS=0.813679;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=150225,45593;QR=0;RO=0;RPL=4216,1275;RPP=9157.94,2771.64;RPPR=0;RPR=0,0;RUN=1,1;SAF=4216,1275;SAP=9157.94,2771.64;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:43:0,20,23:0:0:20,23:716,824:-125.946,-67.5573,-61.5367,-58.7471,0,-51.8234	1/1:78:0,78,0:0:0:78,0:2772,0:-249.721,-23.4803,0,-249.721,-23.4803,-249.721	1/1:112:0,112,0:0:0:112,0:3998,0:-360.001,-33.7154,0,-360.001,-33.7154,-360.001	1/2:36:0,18,18:0:0:18,18:634,629:-103.12,-51.5046,-46.086,-51.9665,0,-46.548	1/2:35:0,14,21:0:0:14,21:500,741:-101.453,-60.686,-56.4716,-41.1218,0,-34.8001	1/2:86:0,37,49:0:0:37,49:1320,1756:-251.15,-143.544,-132.406,-107.964,0,-93.2134	1/1:66:0,66,0:0:0:66,0:2321,0:-209.146,-19.868,0,-209.146,-19.868,-209.146	1/2:75:0,38,37:0:0:38,37:1364,1328:-219.94,-108.677,-97.238,-111.622,0,-100.483	1/1:34:0,34,0:0:0:34,0:1183,0:-106.768,-10.235,0,-106.768,-10.235,-106.768	1/1:49:0,49,0:0:0:49,0:1746,0:-157.422,-14.7505,0,-157.422,-14.7505,-157.422	1/1:79:0,79,0:0:0:79,0:2808,0:-252.956,-23.7814,0,-252.956,-23.7814,-252.956	1/1:50:0,50,0:0:0:50,0:1792,0:-161.562,-15.0515,0,-161.562,-15.0515,-161.562	1/1:84:0,84,0:0:0:84,0:2947,0:-265.451,-25.2865,0,-265.451,-25.2865,-265.451	1/2:41:0,21,20:0:0:21,20:756,720:-120.792,-59.1066,-52.785,-62.0456,0,-56.025	1/2:45:0,19,26:0:0:19,26:680,932:-131.824,-76.3721,-70.6525,-55.8096,0,-47.9828	1/2:36:0,21,15:0:0:21,15:744,536:-104.664,-44.057,-37.7354,-60.9627,0,-56.4472	1/2:24:0,14,10:0:0:14,10:499,356:-70.0463,-29.3709,-25.1565,-41.0314,0,-38.0211	1/1:30:0,30,0:0:0:30,0:1067,0:-96.3412,-9.0309,0,-96.3412,-9.0309,-96.3412	1/1:91:0,91,0:0:0:91,0:3227,0:-290.649,-27.3937,0,-290.649,-27.3937,-290.649	1/1:84:0,84,0:0:0:84,0:2991,0:-269.385,-25.2865,0,-269.385,-25.2865,-269.385	1/2:43:0,12,31:0:0:12,31:428,1112:-125.948,-91.0585,-87.4461,-35.2464,0,-25.9145	1/2:79:0,40,39:0:0:40,39:1427,1400:-230.885,-114.557,-102.516,-116.686,0,-104.945	1/1:38:0,38,0:0:0:38,0:1353,0:-122.068,-11.4391,0,-122.068,-11.4391,-122.068	1/1:38:0,38,0:0:0:38,0:1356,0:-122.34,-11.4391,0,-122.34,-11.4391,-122.34	1/1:122:0,122,0:0:0:122,0:4341,0:-390.864,-36.7257,0,-390.864,-36.7257,-390.864	1/2:111:0,55,56:0:0:55,56:1968,2008:-324.57,-164.09,-147.533,-160.838,0,-143.981	1/2:18:0,12,6:0:0:12,6:432,216:-53.2333,-17.9843,-14.372,-35.6088,0,-33.8027	1/1:151:0,151,0:0:0:151,0:5406,0:-486.668,-45.4555,0,-486.668,-45.4555,-486.668	1/1:83:0,81,2:0:0:81,2:2887,72:-259.706,-24.3834,0,-253.831,-18.1488,-253.229	1/2:120:0,51,69:0:0:51,69:1832,2457:-348.665,-199.213,-183.861,-149.808,0,-129.037	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:15:0,7,8:0:0:7,8:252,288:-44.4211,-23.8592,-21.752,-20.9217,0,-18.5135	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/1:13:0,13,0:0:0:13,0:446,0:-40.3796,-3.91339,0,-40.3796,-3.91339,-40.3796	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:122:0,61,61:0:0:61,61:2159,2175:-353.435,-177.577,-159.214,-176.213,0,-157.85	1/1:84:0,84,0:0:0:84,0:3016,0:-271.67,-25.2865,0,-271.67,-25.2865,-271.67	1/1:43:0,43,0:0:0:43,0:1512,0:-136.37,-12.9443,0,-136.37,-12.9443,-136.37	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:89:0,44,45:0:0:44,45:1563,1608:-258.778,-131.419,-118.174,-127.716,0,-114.169	1/1:21:0,21,0:0:0:21,0:747,0:-67.5543,-6.32163,0,-67.5543,-6.32163,-67.5543	1/1:49:0,49,0:0:0:49,0:1737,0:-156.605,-14.7505,0,-156.605,-14.7505,-156.605	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/2:76:0,34,42:0:0:34,42:1215,1508:-222.417,-123.354,-113.119,-99.4207,0,-86.7775	1/1:53:0,53,0:0:0:53,0:1896,0:-170.916,-15.9546,0,-170.916,-15.9546,-170.916	1/1:68:0,68,0:0:0:68,0:2444,0:-220.215,-20.47,0,-220.215,-20.47,-220.215	1/1:69:0,69,0:0:0:69,0:2448,0:-220.557,-20.7711,0,-220.557,-20.7711,-220.557	1/2:78:0,41,37:0:0:41,37:1464,1320:-227.293,-107.936,-95.5941,-119.714,0,-108.576	1/1:60:0,60,0:0:0:60,0:2160,0:-194.667,-18.0618,0,-194.667,-18.0618,-194.667	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:61:0,61,0:0:0:61,0:2188,0:-197.186,-18.3628,0,-197.186,-18.3628,-197.186	1/2:45:0,22,23:0:0:22,23:792,816:-131.464,-66.838,-60.2154,-64.983,0,-58.0593	1/2:34:0,16,18:0:0:16,18:576,648:-100.232,-53.2333,-48.4169,-47.3585,0,-41.94	1/1:83:0,83,0:0:0:83,0:2952,0:-265.912,-24.9855,0,-265.912,-24.9855,-265.912	1/2:38:0,16,22:0:0:16,22:572,792:-111.622,-64.983,-60.1665,-46.9969,0,-40.3743	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:1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chr09	23338214	.	ATGTGGA	ATGTGGG,ATGCGGG	255460	PASS	AB=0.474691,0.516808;ABP=31.8083,15.7119;AC=140,46;AF=0.752688,0.247312;AN=186;AO=9114,2688;CIGAR=6M1X,3M1X2M1X;DP=11895;DPB=11894.9;DPRA=0,1.00215;EPP=19689.7,5813.9;EPPR=33.4109;GTI=2;LEN=1,7;MEANALT=2.3871,2.7963;MQM=59.1362,47.2455;MQMR=59.5;NS=93;NUMALT=2;ODDS=1.48295;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=326083,94793;QR=500;RO=14;RPL=12,3;RPP=19689.7,5813.9;RPPR=33.4109;RPR=9102,2685;RUN=1,1;SAF=9114,2688;SAP=19793.8,5839.93;SAR=0,0;SRF=14;SRP=33.4109;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17,0:0:0:17,0:608,0:-55.0511,-5.11751,0,-55.0511,-5.11751,-55.0511	1/2:406:0,154,247:0:0:154,247:5502,8724:-1152.41,-704.13,-657.772,-448.314,0,-373.959	1/1:189:0,187,0:0:0:187,0:6681,0:-601.024,-56.2926,0,-601.024,-56.2926,-601.024	1/1:253:0,251,1:0:0:251,1:8969,30:-806.575,-75.5585,0,-804.184,-73.1577,-803.883	1/2:91:0,49,42:0:0:49,42:1748,1489:-263.118,-120.677,-105.927,-142.795,0,-130.152	1/2:62:1,24,37:1:36:24,37:855,1306:-171.734,-102.343,-98.0564,-66.7482,0,-58.5477	1/2:129:0,53,74:0:0:53,74:1883,2618:-364.425,-211.114,-195.159,-153.317,0,-131.041	1/1:161:1,159,0:1:34:159,0:5688,0:-508.111,-45.1195,0,-508.412,-47.8638,-511.166	1/2:110:0,58,51:0:0:58,51:2073,1786:-313.393,-144.367,-126.907,-169.038,0,-153.685	1/1:42:0,41,0:0:0:41,0:1460,0:-131.338,-12.3422,0,-131.338,-12.3422,-131.338	1/1:73:0,71,0:0:0:71,0:2536,0:-228.104,-21.3731,0,-228.104,-21.3731,-228.104	1/1:96:0,96,0:0:0:96,0:3443,0:-309.992,-28.8989,0,-309.992,-28.8989,-309.992	1/1:100:1,97,0:1:36:97,0:3480,0:-309.773,-26.2617,0,-310.074,-29.1999,-313.012	1/1:89:0,87,0:0:0:87,0:3097,0:-278.526,-26.1896,0,-278.526,-26.1896,-278.526	1/2:106:1,48,57:1:36:48,57:1724,2040:-301.625,-161.419,-149.907,-137.566,0,-123.345	1/2:93:0,53,40:0:0:53,40:1891,1408:-267.898,-113.745,-97.7905,-154.505,0,-142.464	1/2:118:0,64,54:0:0:64,54:2296,1922:-342.936,-155.699,-136.433,-187.593,0,-171.337	1/2:95:0,46,48:0:0:46,48:1648,1714:-272.733,-138.335,-124.488,-134.395,0,-119.946	1/1:73:0,73,0:0:0:73,0:2620,0:-235.993,-21.9752,0,-235.993,-21.9752,-235.993	1/1:447:1,442,1:1:34:442,1:15835,36:-1420.96,-130.301,0,-1418.36,-130.153,-1420.81	1/1:157:0,157,0:0:0:157,0:5606,0:-504.486,-47.2617,0,-504.486,-47.2617,-504.486	1/2:142:0,41,100:0:0:41,100:1472,3543:-404.909,-284.934,-272.592,-120.09,0,-89.9873	1/2:144:0,53,89:0:0:53,89:1900,3172:-410.647,-255.812,-239.857,-154.886,0,-128.094	1/1:78:0,76,1:0:0:76,1:2720,36:-244.599,-22.8783,0,-241.69,-19.97,-241.389	1/1:92:0,91,0:0:0:91,0:3268,0:-293.89,-27.3937,0,-293.89,-27.3937,-293.89	1/1:217:1,213,1:1:36:213,1:7639,36:-683.414,-61.1814,0,-680.814,-61.2184,-683.45	1/2:260:0,113,145:0:0:113,145:4060,5136:-745.499,-414.343,-380.327,-331.202,0,-287.553	1/2:66:0,31,35:0:0:31,35:1112,1230:-189.926,-99.2516,-89.9197,-91.0279,0,-80.4919	1/1:364:1,363,0:1:36:363,0:12992,0:-1164.97,-105.977,0,-1165.27,-109.274,-1168.21	1/1:102:0,102,0:0:0:102,0:3649,0:-328.462,-30.7051,0,-328.462,-30.7051,-328.462	1/2:150:0,72,77:0:0:72,77:2584,2724:-429.718,-219.009,-197.335,-210.715,0,-187.536	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:17:1,14,2:1:36:14,2:500,72:-43.3573,-2.89893,-1.62261,-37.8199,0,-40.1554	1/2:2:0,1,1:0:0:1,1:36,33:-5.93846,-2.98546,-2.68443,-3.29724,0,-2.99621	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:235:0,117,117:0:0:117,117:4201,4166:-677.078,-334.57,-299.349,-342.505,0,-307.284	1/1:146:0,145,0:0:0:145,0:5169,0:-464.983,-43.6494,0,-464.983,-43.6494,-464.983	1/1:78:0,77,0:0:0:77,0:2760,0:-248.307,-23.1793,0,-248.307,-23.1793,-248.307	.:.:.:.:.:.:.:.	1/2:195:0,97,96:0:0:97,96:3480,3387:-557.486,-273.759,-244.559,-283.776,0,-254.877	1/1:40:0,40,0:0:0:40,0:1436,0:-129.524,-12.0412,0,-129.524,-12.0412,-129.524	1/1:208:0,208,0:0:0:208,0:7426,0:-668.372,-62.6142,0,-668.372,-62.6142,-668.372	1/1:93:0,92,0:0:0:92,0:3292,0:-296.254,-27.6948,0,-296.254,-27.6948,-296.254	1/1:87:0,87,0:0:0:87,0:3120,0:-280.925,-26.1896,0,-280.925,-26.1896,-280.925	1/2:60:0,26,34:0:0:26,34:917,1200:-170.241,-95.6215,-87.7947,-74.969,0,-64.7339	1/1:162:0,159,0:0:0:159,0:5712,0:-513.822,-47.8638,0,-513.822,-47.8638,-513.822	1/1:234:0,232,0:0:0:232,0:8317,0:-747.865,-69.839,0,-747.865,-69.839,-747.865	1/1:129:0,129,0:0:0:129,0:4594,0:-413.559,-38.8329,0,-413.559,-38.8329,-413.559	1/2:126:0,69,57:0:0:69,57:2476,2017:-364.228,-162.278,-141.507,-202.303,0,-185.144	1/1:143:0,142,0:0:0:142,0:5085,0:-457.222,-42.7463,0,-457.222,-42.7463,-457.222	1/2:9:0,5,4:0:0:5,4:176,143:-26.2219,-11.8965,-10.3913,-14.6785,0,-13.4744	1/1:233:0,232,0:0:0:232,0:8319,0:-748.425,-69.839,0,-748.425,-69.839,-748.425	1/2:71:0,34,37:0:0:34,37:1205,1320:-204.651,-106.72,-96.4854,-98.2837,0,-87.1456	1/2:12:0,8,4:0:0:8,4:284,144:-35.1562,-12.0176,-9.60935,-23.4951,0,-22.291	1/1:216:0,213,3:0:0:213,3:7626,107:-685.936,-64.1194,0,-677.292,-55.1226,-676.389	1/2:89:0,48,40:0:0:48,40:1720,1388:-251.871,-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chr09	23343855	.	A	G	22407.2	PASS	AB=0.490754;ABP=5.01795;AC=49;AF=0.269231;AN=182;AO=1370;CIGAR=1X;DP=6997;DPB=6997;DPRA=0.843161;EPP=2977.93;EPPR=12135;GTI=5;LEN=1;MEANALT=1.29412;MQM=59.6949;MQMR=59.9952;NS=91;NUMALT=1;ODDS=5.4565;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48859;QR=200288;RO=5587;RPL=0;RPP=2977.93;RPPR=11936.1;RPR=1370;RUN=1;SAF=1370;SAP=2977.93;SAR=0;SRF=5564;SRP=11936.1;SRR=23;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:104:36,68:36:1292:68:2402:-185.118,0,-85.2766	0/0:99:98,0:98:3516:0:0:0,-29.5009,-316.289	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.49	0/1:43:24,19:24:864:19:684:-48.9368,0,-65.1383	0/1:26:14,12:14:500:12:432:-31.391,0,-37.5094	0/1:102:46,55:46:1648:55:1942:-144.288,0,-117.845	0/0:94:92,1:92:3288:1:36:0,-24.7573,-292.542	0/1:73:35,38:35:1260:38:1356:-100.362,0,-91.7303	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:113:110,0:110:3956:0:0:0,-33.1133,-355.883	0/0:83:82,0:82:2933:0:0:0,-24.6845,-263.843	0/0:88:88,0:88:3168:0:0:0,-26.4906,-285.343	0/1:60:36,23:36:1296:23:824:-56.3628,0,-98.8233	0/1:60:28,30:28:1008:30:1065:-78.3359,0,-73.2168	0/1:37:22,15:22:788:15:540:-37.7984,0,-60.1067	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.784	0/0:123:123,0:123:4405:0:0:0,-37.0267,-396.62	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:67:30,37:30:1076:37:1330:-99.825,0,-76.9838	0/1:35:17,18:17:608:18:648:-48.1049,0,-44.516	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.203	0/0:141:140,1:140:5036:1:36:0,-38.847,-449.783	0/1:192:102,90:102:3645:90:3232:-233.29,0,-270.455	0/1:21:10,10:10:360:10:341:-24.6391,0,-26.3639	0/0:236:236,0:236:8453:0:0:0,-71.0431,-760.77	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.894	0/1:97:47,50:47:1688:50:1781:-131.364,0,-123.007	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:149:79,68:79:2840:68:2436:-174.879,0,-211.226	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.657	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	.:.:.:.:.:.:.:.	0/1:134:70,64:70:2478:64:2296:-166.532,0,-182.933	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.26	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/0:49:48,0:48:1728:0:0:0,-14.4494,-155.445	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:68:25,43:25:900:43:1544:-118.781,0,-60.851	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:140:140,0:140:5001:0:0:0,-42.1442,-450.237	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:83:54,29:54:1928:29:1040:-68.8402,0,-148.811	0/0:126:126,0:126:4512:0:0:0,-37.9298,-406.248	1/1:7:0,7:0:0:7:252:-23.0227,-2.10721,0	0/0:196:192,0:192:6860:0:0:0,-57.7978,-617.118	0/1:65:34,31:34:1220:31:1111:-80.7342,0,-90.5399	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:121:120,0:120:4296:0:0:0,-36.1236,-386.457	0/1:17:6,11:6:212:11:392:-30.5002,0,-14.3073	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:79:38,41:38:1364:41:1465:-108.28,0,-99.2793	0/0:115:113,1:113:4068:1:36:0,-31.079,-362.706	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:125:70,55:70:2520:55:1972:-139.738,0,-189.422	0/0:112:109,1:109:3904:1:36:0,-29.8749,-347.955	0/1:53:31,22:31:1116:22:780:-54.54,0,-84.7971	0/1:50:29,21:29:1044:21:752:-52.9548,0,-79.2233	0/1:91:29,62:29:1044:62:2168:-167.975,0,-66.8811	0/0:167:164,3:164:5873:3:108:0,-40.1968,-518.603	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:50:35,15:35:1248:15:540:-33.8817,0,-97.5734	0/0:76:75,0:75:2700:0:0:0,-22.5772,-242.883	1/1:11:0,11:0:0:11:362:-32.8934,-3.31133,0	0/0:150:150,0:150:5384:0:0:0,-45.1545,-484.69	0/1:69:29,40:29:1040:40:1417:-107.051,0,-73.1433	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:177:174,2:174:6252:2:72:0,-46.5044,-555.935	0/1:72:55,17:55:1972:17:608:-33.3779,0,-156.052	0/0:82:78,1:78:2773:1:36:0,-20.5396,-246.222	.:.:.:.:.:.:.:.	0/1:67:36,31:36:1296:31:1116:-80.5735,0,-96.7749	0/0:99:97,0:97:3465:0:0:0,-29.1999,-311.701	0/0:98:96,0:96:3444:0:0:0,-28.8989,-309.81	0/1:62:34,28:34:1209:28:1008:-72.3702,0,-90.4499	0/1:66:40,26:40:1436:26:913:-62.6137,0,-109.67	0/1:51:30,20:30:1076:20:708:-48.6346,0,-81.7416	0/0:117:116,0:116:4168:0:0:0,-34.9195,-374.941	0/1:19:8,10:8:273:10:360:-26.9659,0,-19.1239	0/1:65:32,31:32:1152:31:1093:-79.3432,0,-84.6654	0/1:58:30,27:30:1076:27:968:-69.9155,0,-79.6344	0/1:65:23,42:23:828:42:1512:-116.803,0,-55.2772	0/1:124:58,65:58:2084:65:2324:-172.029,0,-150.444	0/1:65:21,44:21:756:44:1580:-122.922,0,-48.8003	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.276	0/0:73:71,0:71:2556:0:0:0,-21.3731,-229.93
chr09	23343981	.	C	T	150630	PASS	AB=0.507565;ABP=4.75157;AC=137;AF=0.744565;AN=184;AO=7034;CIGAR=1X;DP=8773;DPB=8773;DPRA=96.3956;EPP=15268.5;EPPR=3768.34;GTI=5;LEN=1;MEANALT=1.05495;MQM=59.992;MQMR=60;NS=92;NUMALT=1;ODDS=0.162342;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250606;QR=61575;RO=1734;RPL=0;RPP=15277.1;RPPR=3768.34;RPR=7034;RUN=1;SAF=1;SAP=15268.5;SAR=7033;SRF=0;SRP=3768.34;SRR=1734;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	0/1:132:46,86:46:1648:86:3050:-234.992,0,-108.873	1/1:116:0,116:0:0:116:4121:-371.077,-34.9195,0	1/1:189:3,186:3:108:186:6640:-587.603,-46.8195,0	0/1:58:33,24:33:1161:24:860:-60.2034,0,-87.2764	0/1:55:32,23:32:1140:23:828:-58.2875,0,-86.3526	0/1:154:76,77:76:2699:77:2764:-202.584,0,-196.738	1/1:94:1,93:1:36:93:3316:-295.06,-24.6985,0	0/1:94:38,56:38:1356:56:1978:-149.996,0,-94.0437	1/1:105:0,105:0:0:105:3732:-336.081,-31.6082,0	1/1:42:0,42:0:0:42:1467:-132.322,-12.6433,0	1/1:84:0,84:0:0:84:2999:-270.127,-25.2865,0	1/1:84:0,84:0:0:84:2978:-268.253,-25.2865,0	1/1:70:0,69:0:0:69:2480:-223.093,-20.7711,0	0/1:84:42,42:42:1499:42:1492:-109.288,0,-109.917	0/1:61:28,33:28:979:33:1169:-87.1525,0,-70.0592	0/1:87:37,50:37:1328:50:1783:-134.562,0,-93.6326	0/1:66:32,34:32:1148:34:1203:-88.7065,0,-83.7619	1/1:37:0,37:0:0:37:1302:-117.48,-11.1381,0	1/1:170:0,170:0:0:170:6030:-542.806,-51.1751,0	1/1:134:1,133:1:36:133:4741:-423.251,-36.7397,0	0/1:138:72,66:72:2542:66:2347:-169.944,0,-187.489	0/1:59:20,39:20:716:39:1400:-108.538,0,-47.0069	1/1:125:0,125:0:0:125:4477:-403.097,-37.6288,0	1/1:75:0,75:0:0:75:2681:-241.534,-22.5773,0	1/1:327:0,327:0:0:327:11644:-1047.83,-98.4368,0	0/1:138:69,69:69:2446:69:2459:-180.022,0,-178.852	0/1:32:22,10:22:775:10:360:-23.1113,0,-60.4382	1/1:270:1,269:1:36:269:9503:-851.637,-77.6798,0	1/1:81:0,81:0:0:81:2868:-258.311,-24.3834,0	0/1:86:31,55:31:1108:55:1954:-150.245,0,-74.1424	.:.:.:.:.:.:.:.	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	.:.:.:.:.:.:.:.	0/1:214:104,109:104:3694:109:3861:-283.307,0,-268.281	1/1:230:1,229:1:32:229:8144:-729.777,-66.0376,0	1/1:57:0,57:0:0:57:2043:-184.141,-17.1587,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:116:67,49:67:2383:49:1737:-121.694,0,-179.808	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:72:0,72:0:0:72:2558:-230.47,-21.6742,0	1/1:72:1,71:1:36:71:2520:-223.453,-18.0759,0	1/1:85:0,85:0:0:85:3020:-272.03,-25.5876,0	0/1:131:65,66:65:2271:66:2368:-173.943,0,-165.213	1/1:104:0,104:0:0:104:3712:-334.283,-31.3071,0	1/1:170:0,170:0:0:170:6075:-546.851,-51.1751,0	1/1:139:0,139:0:0:139:4972:-447.626,-41.8432,0	0/1:118:52,66:52:1868:66:2364:-177.497,0,-132.878	1/1:352:0,352:0:0:352:12547:-1129.06,-105.963,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:99:0,99:0:0:99:3525:-317.459,-29.802,0	0/1:32:21,10:21:744:10:356:-22.6899,0,-57.5928	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:116:1,115:1:36:115:4128:-368.105,-31.3212,0	0/1:51:22,29:22:771:29:1036:-78.2014,0,-54.3578	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:79:38,41:38:1356:41:1472:-108.995,0,-98.5591	1/1:137:0,137:0:0:137:4905:-441.6,-41.2411,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:223:101,122:101:3596:122:4328:-322.564,0,-256.719	1/1:246:0,246:0:0:246:8763:-788.656,-74.0534,0	0/1:51:39,12:39:1392:12:428:-23.5063,0,-110.226	0/1:71:28,43:28:976:43:1540:-117.52,0,-66.7765	0/1:115:59,56:59:2097:56:2004:-146.015,0,-154.38	1/1:54:0,54:0:0:54:1925:-173.525,-16.2556,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:73:42,31:42:1508:31:1100:-77.3347,0,-114.039	1/1:125:0,125:0:0:125:4460:-401.571,-37.6288,0	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	1/1:119:0,119:0:0:119:4261:-383.669,-35.8226,0	0/1:67:28,39:28:1000:39:1376:-103.968,0,-70.1464	1/1:100:0,100:0:0:100:3577:-322.136,-30.103,0	1/1:145:0,145:0:0:145:5184:-466.7,-43.6494,0	0/1:84:32,52:32:1139:52:1849:-141.402,0,-77.5319	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/1:76:34,42:34:1185:42:1481:-110.704,0,-84.0742	1/1:123:0,123:0:0:123:4372:-393.655,-37.0267,0	1/1:181:2,179:2:72:179:6363:-565.923,-47.6497,0	0/1:124:62,62:62:2211:62:2214:-162.197,0,-161.927	0/1:80:48,32:48:1720:32:1140:-78.8268,0,-131.003	0/1:100:52,48:52:1847:48:1701:-123.271,0,-136.406	1/1:161:1,160:1:36:160:5727:-511.947,-44.8676,0	0/1:41:17,24:17:604:24:839:-63.4835,0,-42.3484	0/1:84:48,36:48:1684:36:1290:-91.1173,0,-126.557	0/1:92:47,45:47:1667:45:1612:-117.675,0,-122.622	0/1:34:28,6:28:992:6:212:-9.18978,0,-79.3594	0/1:85:46,39:46:1622:39:1404:-101.072,0,-120.68	0/1:65:43,22:43:1523:22:779:-50.8651,0,-117.795	1/1:90:0,90:0:0:90:3212:-289.302,-27.0927,0	1/1:114:0,114:0:0:114:4068:-366.307,-34.3174,0
chr09	23346046	.	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chr09	23421774	.	A	G	70651.4	PASS	AB=0.493184;ABP=3.83914;AC=137;AF=0.744565;AN=184;AO=3345;CIGAR=1X;DP=4401;DPB=4401;DPRA=8.04945;EPP=7266.59;EPPR=2287.4;GTI=1;LEN=1;MEANALT=1.04396;MQM=59.9809;MQMR=60;NS=92;NUMALT=1;ODDS=5.79209;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119585;QR=37619;RO=1052;RPL=3345;RPP=7266.59;RPPR=2287.4;RPR=0;RUN=1;SAF=0;SAP=7266.59;SAR=3345;SRF=0;SRP=2287.4;SRR=1052;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:76:33,43:33:1173:43:1529:-115.023,0,-82.9973	0/1:59:26,33:26:924:33:1188:-89.4678,0,-65.7169	1/1:102:0,102:0:0:102:3603:-324.476,-30.7051,0	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	0/1:78:48,30:48:1724:30:1076:-73.6725,0,-131.965	1/1:85:0,85:0:0:85:3032:-273.111,-25.5876,0	0/1:54:31,23:31:1108:23:824:-58.2277,0,-83.7754	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:25:12,13:12:424:13:468:-34.9339,0,-30.9707	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:39:17,22:17:593:22:788:-59.5046,0,-41.9545	0/1:25:12,13:12:432:13:464:-34.5718,0,-31.6954	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:89:58,31:58:2084:31:1116:-73.96,0,-161.038	0/1:66:39,27:39:1396:27:972:-67.9162,0,-106.071	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:49:0,49:0:0:49:1741:-156.973,-14.7505,0	1/1:175:0,175:0:0:175:6267:-564.124,-52.6803,0	0/1:117:52,65:52:1856:65:2320:-173.784,0,-132.099	0/1:20:8,12:8:288:12:428:-32.8382,0,-20.2468	1/1:114:3,111:3:108:111:3951:-345.708,-24.2423,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:79:31,48:31:1104:48:1693:-128.873,0,-75.8893	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:98:52,46:52:1868:46:1652:-119.464,0,-138.898	1/1:84:0,84:0:0:84:2987:-269.063,-25.2865,0	1/1:25:0,25:0:0:25:894:-80.7801,-7.52575,0	.:.:.:.:.:.:.:.	0/1:71:34,37:34:1216:37:1324:-98.089,0,-88.3734	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	0/1:71:43,28:43:1544:28:1000:-68.9422,0,-117.88	1/1:75:0,75:0:0:75:2670:-240.546,-22.5773,0	1/1:84:1,83:1:36:83:2973:-264.203,-21.6882,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	0/1:74:19,55:19:680:55:1959:-154.308,0,-39.2529	1/1:80:0,80:0:0:80:2844:-256.197,-24.0824,0	.:.:.:.:.:.:.:.	1/1:119:0,118:0:0:118:4232:-380.699,-35.5215,0	0/1:36:7,29:7:252:29:1040:-83.0773,0,-12.1919	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	1/1:47:0,47:0:0:47:1673:-150.855,-14.1484,0	0/1:42:25,17:25:888:17:608:-42.0898,0,-67.5958	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:3,3:3:104:3:104:-7.89663,0,-7.89663	0/1:50:30,20:30:1080:20:720:-50.0773,0,-82.4618	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:6:3,3:3:104:3:102:-7.7102,0,-7.89663	0/1:114:54,60:54:1936:60:2142:-158.731,0,-140.199	1/1:72:0,71:0:0:71:2551:-229.48,-21.3731,0	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:69:32,37:32:1140:37:1319:-98.2407,0,-82.1381	0/1:77:50,27:50:1765:27:956:-63.1764,0,-135.952	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:29:14,15:14:496:15:536:-39.8449,0,-36.2444	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	1/1:49:0,48:0:0:48:1720:-154.726,-14.4494,0	0/1:41:15,26:15:540:26:936:-72.2172,0,-36.5943	1/1:56:0,55:0:0:55:1968:-177.035,-16.5567,0	1/1:38:0,38:0:0:38:1345:-121.348,-11.4391,0	0/1:80:37,43:37:1320:43:1542:-114.991,0,-95.0195	1/1:70:1,69:1:36:69:2468:-218.775,-17.4738,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:40:24,16:24:856:16:572:-39.7722,0,-65.3199	1/1:62:0,62:0:0:62:2216:-199.705,-18.6639,0	1/1:89:0,89:0:0:89:3184:-286.784,-26.7917,0	0/1:55:25,30:25:896:30:1080:-80.9566,0,-64.4037	0/1:21:16,5:16:576:5:180:-10.2304,0,-45.8534	0/1:40:24,16:24:856:16:576:-40.1338,0,-65.3199	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/1:40:19,21:19:684:21:752:-55.9651,0,-49.8491	0/1:24:15,9:15:540:9:320:-21.9176,0,-41.7118	0/1:20:10,10:10:360:10:356:-26.3606,0,-26.7237	0/1:43:22,21:22:792:21:748:-54.701,0,-58.6614	0/1:31:22,9:22:788:9:324:-20.1739,0,-61.9129	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0
chr09	23444499	.	G	A	201716	PASS	AB=0.473386;ABP=31.2129;AC=137;AF=0.736559;AN=186;AO=9189;CIGAR=1X;DP=11618;DPB=11618;DPRA=31.5598;EPP=19293.5;EPPR=5070.95;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.9931;MQMR=60;NS=93;NUMALT=1;ODDS=0.878096;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=328598;QR=86595;RO=2425;RPL=9113;RPP=19302;RPPR=5070.95;RPR=76;RUN=1;SAF=1;SAP=19948;SAR=9188;SRF=0;SRP=5268.83;SRR=2425;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:132:64,68:64:2283:68:2444:-180.479,0,-165.995	0/1:158:79,79:79:2810:79:2821:-206.566,0,-205.577	1/1:241:0,241:0:0:241:8648:-778.311,-72.5482,0	0/1:104:50,54:50:1777:54:1936:-143.209,0,-128.904	0/1:41:27,14:27:963:14:504:-33.3559,0,-74.6437	0/1:126:72,54:72:2564:54:1940:-136.946,0,-193.081	1/1:197:1,196:1:36:196:6998:-626.286,-55.7046,0	0/1:116:60,56:60:2131:56:2012:-146.434,0,-157.138	1/1:131:0,131:0:0:131:4685:-421.809,-39.4349,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:83:0,83:0:0:83:2961:-266.722,-24.9855,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:78:43,35:43:1535:35:1260:-90.2251,0,-114.962	0/1:70:31,39:31:1088:39:1397:-104.957,0,-77.1544	0/1:49:22,27:22:792:27:963:-72.2344,0,-56.8552	0/1:61:31,30:31:1112:30:1031:-74.7304,0,-82.0285	1/1:49:0,49:0:0:49:1749:-157.693,-14.7505,0	1/1:381:0,381:0:0:381:13633:-1226.75,-114.692,0	1/1:213:2,211:2:72:211:7571:-674.589,-57.2827,0	0/1:179:117,62:117:4169:62:2198:-144.199,0,-321.508	0/1:88:45,43:45:1608:43:1540:-112.402,0,-118.519	1/1:50:0,50:0:0:50:1780:-160.483,-15.0515,0	1/1:101:0,101:0:0:101:3615:-325.555,-30.404,0	1/1:455:0,455:0:0:455:16259:-1462.98,-136.969,0	0/1:235:130,105:130:4651:105:3776:-269.295,0,-348.01	0/1:50:27,23:27:936:23:828:-59.7926,0,-69.4988	1/1:417:0,417:0:0:417:14931:-1343.52,-125.53,0	1/1:186:0,186:0:0:186:6644:-598.04,-55.9916,0	0/1:120:55,64:55:1967:64:2267:-168.218,0,-141.23	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:21:15,6:15:531:6:216:-13.4689,0,-41.8003	.:.:.:.:.:.:.:.	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:17:0,17:0:0:17:596:-53.9659,-5.11751,0	0/1:188:96,92:96:3444:92:3280:-238.825,0,-253.579	1/1:290:0,290:0:0:290:10363:-932.594,-87.2987,0	1/1:69:0,69:0:0:69:2475:-223.003,-20.7711,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:179:83,96:83:2964:96:3431:-255.119,0,-213.109	1/1:50:1,48:1:36:48:1716:-151.185,-11.4521,0	1/1:144:0,144:0:0:144:5133:-462.113,-43.3483,0	1/1:58:0,58:0:0:58:2071:-186.66,-17.4597,0	1/1:72:0,72:0:0:72:2573:-231.819,-21.6742,0	0/1:82:36,46:36:1284:46:1656:-124.644,0,-91.179	1/1:172:0,172:0:0:172:6126:-551.438,-51.7772,0	1/1:308:1,307:1:32:307:10997:-986.423,-89.5179,0	1/1:156:0,156:0:0:156:5582:-502.456,-46.9607,0	0/1:207:117,90:117:4174:90:3221:-227.797,0,-313.529	1/1:158:0,158:0:0:158:5588:-503.046,-47.5627,0	0/1:16:5,10:5:180:10:360:-27.869,0,-11.6768	1/1:174:0,174:0:0:174:6247:-562.322,-52.3792,0	0/1:46:22,24:22:792:24:860:-63.8745,0,-57.7583	0/1:22:15,7:15:540:7:248:-16.0415,0,-42.3139	1/1:204:0,204:0:0:204:7291:-656.241,-61.4101,0	0/1:78:55,23:55:1972:23:819:-50.5512,0,-154.275	0/1:18:2,16:2:72:16:572:-46.3949,0,-1.41818	0/1:32:16,16:16:563:16:576:-42.542,0,-41.3662	0/1:135:87,48:87:3116:48:1716:-114.087,0,-240.028	1/1:127:2,125:2:72:125:4452:-394.011,-31.3941,0	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2104	0/1:337:192,145:192:6869:145:5180:-364.892,0,-516.83	1/1:323:1,322:1:36:322:11549:-1035.68,-93.6344,0	0/1:60:36,23:36:1288:23:811:-55.3045,0,-98.2196	0/1:136:67,69:67:2391:69:2463:-180.983,0,-174.507	0/1:155:62,93:62:2216:93:3325:-252.808,0,-153.045	1/1:150:0,150:0:0:150:5341:-480.804,-45.1545,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/1:93:37,56:37:1319:56:1968:-149.395,0,-91.0154	1/1:71:0,71:0:0:71:2547:-229.48,-21.3731,0	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	1/1:100:0,100:0:0:100:3581:-322.497,-30.103,0	0/1:98:51,47:51:1836:47:1680:-121.986,0,-136.02	1/1:224:0,224:0:0:224:7958:-716.245,-67.4307,0	1/1:232:0,232:0:0:232:8301:-747.096,-69.839,0	0/1:127:69,58:69:2468:58:2076:-148.88,0,-184.143	1/1:163:1,162:1:36:162:5804:-518.875,-45.4696,0	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/1:181:86,95:86:3084:95:3416:-253.166,0,-223.301	1/1:216:0,216:0:0:216:7750:-697.528,-65.0225,0	1/1:378:1,377:1:36:377:13465:-1208.04,-110.191,0	0/1:108:60,48:60:2134:48:1724:-122.934,0,-159.816	0/1:68:37,31:37:1320:31:1098:-78.6586,0,-98.6319	0/1:112:56,56:56:2003:56:2008:-147.278,0,-146.827	1/1:163:0,163:0:0:163:5858:-527.328,-49.0679,0	0/1:45:25,20:25:892:20:716:-51.2214,0,-67.0533	0/1:86:37,49:37:1328:49:1760:-132.795,0,-93.9337	0/1:85:46,39:46:1652:39:1393:-100.08,0,-123.381	0/1:47:17,30:17:608:30:1080:-83.3648,0,-40.9036	0/1:101:61,40:61:2161:40:1440:-99.4937,0,-164.351	0/1:61:39,22:39:1396:22:769:-51.1658,0,-107.576	1/1:109:0,109:0:0:109:3909:-352.003,-32.8123,0	1/1:95:0,95:0:0:95:3408:-306.934,-28.5979,0
chr09	23463474	.	AC	TC,TT	26940.2	PASS	AB=0.518957,0.478673;ABP=5.64488,6.34469;AC=142,46;AF=0.755319,0.244681;AN=188;AO=1691,406;CIGAR=1X1M,2X;DP=2101;DPB=2101;DPRA=0,0.664115;EPP=3674.97,884.628;EPPR=0;GTI=10;LEN=1,2;MEANALT=1.55319,2.04167;MQM=30.6623,18.5369;MQMR=0;NS=94;NUMALT=2;ODDS=15.7481;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=51711,14370;QR=0;RO=0;RPL=0,0;RPP=3674.97,884.628;RPPR=0;RPR=1691,406;RUN=1,1;SAF=0,0;SAP=3674.97,884.628;SAR=1691,406;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:5:0,5,0:0:0:5,0:150,0:-12.4163,-1.50515,0,-12.4163,-1.50515,-12.4163	1/2:38:0,16,22:0:0:16,22:477,792:-64.9463,-31.0187,-26.2022,-34.1628,0,-27.5402	1/2:27:0,13,14:0:0:13,14:380,504:-46.612,-19.808,-15.8946,-27.0311,0,-22.8167	1/1:36:0,36,0:0:0:36,0:1094,0:-89.3645,-10.8371,0,-89.3645,-10.8371,-89.3645	1/2:10:0,6,4:0:0:6,4:188,144:-19.3402,-5.79453,-3.98835,-13.7724,0,-12.5683	1/2:8:0,4,4:0:0:4,4:120,144:-14.3479,-5.79453,-4.59041,-8.78287,0,-7.57875	1/2:26:0,13,13:0:0:13,13:403,466:-46.1307,-17.2438,-13.3304,-29.1165,0,-25.2031	1/1:30:0,30,0:0:0:30,0:890,0:-72.2455,-9.0309,0,-72.2455,-9.0309,-72.2455	1/2:10:0,7,3:0:0:7,3:210,108:-19.3474,-4.39319,-2.28598,-15.1676,0,-14.2645	1/1:17:0,17,0:0:0:17,0:515,0:-42.0216,-5.11751,0,-42.0216,-5.11751,-42.0216	1/1:15:0,15,0:0:0:15,0:454,0:-37.0728,-4.51545,0,-37.0728,-4.51545,-37.0728	1/1:15:0,15,0:0:0:15,0:447,0:-36.55,-4.51545,0,-36.55,-4.51545,-36.55	1/1:12:0,12,0:0:0:12,0:360,0:-29.4211,-3.61236,0,-29.4211,-3.61236,-29.4211	1/1:19:0,19,0:0:0:19,0:591,0:-48.3275,-5.71957,0,-48.3275,-5.71957,-48.3275	1/2:9:0,3,6:0:0:3,6:93,216:-14.745,-8.05685,-7.15376,-6.93451,0,-5.12833	1/2:7:0,4,3:0:0:4,3:116,104:-12.5792,-4.38408,-3.17996,-8.41446,0,-7.51137	1/2:7:0,4,3:0:0:4,3:120,106:-12.9478,-4.38863,-3.18451,-8.78287,0,-7.87978	1/2:6:0,3,3:0:0:3,3:90,108:-10.8183,-4.39319,-3.4901,-6.65463,0,-5.75154	1/1:4:0,4,0:0:0:4,0:118,0:-9.80211,-1.20412,0,-9.80211,-1.20412,-9.80211	1/1:29:0,29,0:0:0:29,0:889,0:-72.4359,-8.72987,0,-72.4359,-8.72987,-72.4359	1/1:16:0,16,0:0:0:16,0:491,0:-40.1365,-4.81648,0,-40.1365,-4.81648,-40.1365	1/2:12:0,7,5:0:0:7,5:217,180:-22.33,-6.74393,-4.63672,-15.8073,0,-14.3022	1/2:9:0,3,6:0:0:3,6:93,214:-14.6516,-7.9629,-7.05981,-6.93451,0,-5.12833	1/1:34:0,34,0:0:0:34,0:1086,0:-88.8221,-10.235,0,-88.8221,-10.235,-88.8221	1/1:8:0,8,0:0:0:8,0:242,0:-19.887,-2.40824,0,-19.887,-2.40824,-19.887	1/1:124:0,124,0:0:0:124,0:3804,0:-309.067,-37.3277,0,-309.067,-37.3277,-309.067	1/2:33:0,14,19:0:0:14,19:444,665:-58.6932,-26.6969,-22.4824,-32.2415,0,-26.522	1/2:8:0,4,4:0:0:4,4:123,144:-14.7872,-5.79453,-4.59041,-9.22821,0,-8.02409	1/1:57:0,57,0:0:0:57,0:1707,0:-138.474,-17.1587,0,-138.474,-17.1587,-138.474	1/1:70:0,70,0:0:0:70,0:2152,0:-175.012,-21.0721,0,-175.012,-21.0721,-175.012	1/2:29:0,17,12:0:0:17,12:517,432:-52.801,-15.9344,-10.8169,-37.0852,0,-33.4728	1/1:14:0,14,0:0:0:14,0:443,0:-36.53,-4.21442,0,-36.53,-4.21442,-36.53	1/1:8:0,7,1:0:0:7,1:224,36:-18.3525,-2.10721,0,-16.9638,-0.516713,-16.6628	1/2:17:0,10,7:0:0:10,7:304,250:-31.8272,-9.9941,-6.9838,-22.0577,0,-19.9505	1/1:3:0,3,0:0:0:3,0:80,0:-6.62559,-0.90309,0,-6.62559,-0.90309,-6.62559	1/1:14:0,14,0:0:0:14,0:418,0:-34.0984,-4.21442,0,-34.0984,-4.21442,-34.0984	1/2:37:0,19,17:0:0:19,17:585,610:-64.195,-22.2211,-16.5016,-41.9246,0,-36.807	1/1:46:0,46,0:0:0:46,0:1432,0:-116.872,-13.8474,0,-116.872,-13.8474,-116.872	1/1:11:0,11,0:0:0:11,0:311,0:-25.2664,-3.31133,0,-25.2664,-3.31133,-25.2664	1/2:6:0,4,2:0:0:4,2:128,72:-12.2917,-2.99184,-1.78772,-9.52258,0,-8.92052	1/2:48:0,31,17:0:0:31,17:968,586:-93.3011,-23.8442,-14.5122,-69.6783,0,-64.5608	1/1:10:0,10,0:0:0:10,0:315,0:-26.0923,-3.0103,0,-26.0923,-3.0103,-26.0923	1/1:26:0,26,0:0:0:26,0:826,0:-67.587,-7.82678,0,-67.587,-7.82678,-67.587	1/1:8:0,8,0:0:0:8,0:244,0:-20.2107,-2.40824,0,-20.2107,-2.40824,-20.2107	1/1:11:0,11,0:0:0:11,0:341,0:-27.9914,-3.31133,0,-27.9914,-3.31133,-27.9914	1/2:8:0,4,4:0:0:4,4:113,138:-13.3395,-5.4182,-4.21408,-8.13706,0,-6.93294	1/1:9:0,9,0:0:0:9,0:268,0:-21.9512,-2.70927,0,-21.9512,-2.70927,-21.9512	1/1:66:0,66,0:0:0:66,0:1994,0:-162.372,-19.868,0,-162.372,-19.868,-162.372	1/1:29:0,29,0:0:0:29,0:878,0:-71.4441,-8.72987,0,-71.4441,-8.72987,-71.4441	1/2:29:0,11,18:0:0:11,18:341,613:-47.974,-23.535,-20.2237,-24.6801,0,-19.2616	1/1:52:0,52,0:0:0:52,0:1577,0:-128.501,-15.6536,0,-128.501,-15.6536,-128.501	1/2:17:0,11,6:0:0:11,6:340,203:-32.3636,-7.98808,-4.67675,-24.5892,0,-22.783	1/1:30:0,30,0:0:0:30,0:893,0:-72.6285,-9.0309,0,-72.6285,-9.0309,-72.6285	1/2:16:0,10,6:0:0:10,6:310,216:-30.3017,-8.05685,-5.04655,-22.4619,0,-20.6557	1/2:44:0,21,23:0:0:21,23:623,815:-75.769,-32.3363,-26.0147,-43.6603,0,-36.7366	1/1:21:0,21,0:0:0:21,0:667,0:-54.7951,-6.32163,0,-54.7951,-6.32163,-54.7951	1/2:4:0,1,3:0:0:1,3:31,108:-6.36143,-4.11809,-3.81706,-2.49811,0,-1.59502	1/1:5:0,5,0:0:0:5,0:160,0:-13.5031,-1.50515,0,-13.5031,-1.50515,-13.5031	1/2:14:0,9,5:0:0:9,5:274,169:-26.2546,-6.67848,-3.96921,-19.7885,0,-18.2833	1/2:27:0,18,9:0:0:18,9:580,318:-54.9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chr09	23515765	.	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chr09	23516053	.	A	C	100787	PASS	AB=0.46495;ABP=32.8455;AC=138;AF=0.734043;AN=188;AO=4760;CIGAR=1X;DP=6269;DPB=6269;DPRA=16.8414;EPP=10339.2;EPPR=3253.73;GTI=3;LEN=1;MEANALT=1.03226;MQM=59.9739;MQMR=59.9096;NS=94;NUMALT=1;ODDS=0.757912;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169897;QR=53871;RO=1505;RPL=0;RPP=10339.2;RPPR=3253.73;RPR=4760;RUN=1;SAF=4760;SAP=10339.2;SAR=0;SRF=1505;SRP=3271.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:98:56,42:56:2008:42:1504:-106.154,0,-151.443	0/1:143:92,51:92:3312:51:1809:-120.042,0,-255.25	1/1:198:0,198:0:0:198:7059:-635.374,-59.6039,0	0/1:36:23,13:23:828:13:464:-31.2604,0,-64.007	0/1:19:12,6:12:432:6:216:-14.0121,0,-33.4428	0/1:58:27,31:27:968:31:1108:-82.5713,0,-69.9776	1/1:59:0,59:0:0:59:2107:-189.899,-17.7608,0	0/1:101:50,51:50:1796:51:1805:-132.326,0,-131.518	1/1:82:0,82:0:0:82:2928:-263.755,-24.6845,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:66:0,66:0:0:66:2367:-213.287,-19.868,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:60:29,31:29:1044:31:1116:-82.6899,0,-76.213	0/1:36:15,21:15:536:21:752:-57.1692,0,-37.7377	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	0/1:35:19,16:19:684:16:572:-41.2774,0,-51.3543	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	1/1:111:0,111:0:0:111:3954:-356.05,-33.4143,0	1/1:147:0,147:0:0:147:5225:-470.39,-44.2514,0	0/1:55:41,14:41:1472:14:504:-29.1414,0,-116.19	0/1:60:33,27:33:1173:27:964:-69.015,0,-87.8138	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:33:0,33:0:0:33:1176:-106.147,-9.93399,0	1/1:138:1,137:1:36:137:4861:-434.048,-37.9439,0	0/1:157:72,85:72:2565:85:3029:-225.578,0,-183.837	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	1/1:152:0,152:0:0:152:5422:-488.108,-45.7566,0	1/1:147:0,147:0:0:147:5228:-470.659,-44.2514,0	0/1:57:30,27:30:1080:27:960:-68.6988,0,-80.327	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:9:6,3:6:201:3:108:-7.3659,0,-15.7078	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99521	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:138:75,62:75:2677:62:2224:-158.806,0,-199.573	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:171:101,70:101:3602:70:2488:-172.695,0,-272.897	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:132:0,132:0:0:132:4732:-426.038,-39.736,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:93:37,56:37:1328:56:2000:-152.278,0,-91.8264	1/1:78:1,77:1:36:77:2768:-245.762,-19.8821,0	1/1:139:0,137:0:0:137:4894:-440.249,-41.2411,0	1/1:94:0,94:0:0:94:3345:-301.267,-28.2968,0	0/1:59:32,27:32:1144:27:972:-70.0087,0,-85.5087	1/1:118:0,118:0:0:118:4208:-378.903,-35.5215,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:76:0,76:0:0:76:2697:-242.974,-22.8783,0	0/1:111:62,49:62:2213:49:1752:-124.55,0,-166.005	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:115:0,115:0:0:115:4123:-371.253,-34.6185,0	0/1:28:12,16:12:432:16:572:-43.3846,0,-30.7924	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:17:10,7:10:345:7:240:-16.8172,0,-26.2495	0/1:52:28,24:28:1004:24:845:-60.7135,0,-75.0223	1/1:57:0,57:0:0:57:2039:-183.781,-17.1587,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.7976	0/1:209:119,90:119:4260:90:3215:-226.658,0,-320.663	1/1:82:3,79:3:108:79:2832:-245.043,-14.6093,0	0/1:29:15,14:15:540:14:490:-35.6997,0,-40.2067	0/1:87:44,43:44:1580:43:1529:-111.712,0,-116.302	0/1:143:82,61:82:2922:61:2176:-153.059,0,-220.165	1/1:191:2,189:2:57:189:6735:-600.81,-52.0834,0	0/1:16:2,14:2:72:14:492:-39.7959,0,-2.02024	0/1:43:28,15:28:1008:15:536:-35.6305,0,-77.9017	1/1:26:0,26:0:0:26:920:-83.1171,-7.82678,0	0/1:22:10,12:10:356:12:428:-32.2361,0,-25.7586	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	0/1:78:46,32:46:1656:32:1144:-79.7892,0,-125.848	1/1:66:0,66:0:0:66:2355:-212.198,-19.868,0	1/1:128:0,128:0:0:128:4571:-411.556,-38.5318,0	0/1:87:42,45:42:1500:45:1595:-117.65,0,-109.102	1/1:81:0,81:0:0:81:2892:-260.517,-24.3834,0	0/1:10:7,3:7:248:3:104:-6.69251,0,-19.6539	0/1:70:39,31:39:1396:31:1116:-79.6796,0,-104.867	1/1:104:0,104:0:0:104:3720:-334.812,-31.3071,0	1/1:100:0,100:0:0:100:3571:-321.598,-30.103,0	0/1:47:23,24:23:824:24:864:-63.9342,0,-60.3349	0/1:44:16,28:16:576:28:1004:-77.4305,0,-38.9297	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:115:0,115:0:0:115:4067:-366.218,-34.6185,0	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	0/1:53:20,33:20:716:33:1180:-90.5535,0,-48.8131	0/1:40:17,23:17:612:23:820:-62.0813,0,-43.3722	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/1:38:19,19:19:680:19:684:-50.4512,0,-50.09	0/1:80:50,30:50:1800:30:1076:-73.0705,0,-138.2	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0
chr09	23516063	.	G	C	101396	PASS	AB=0.471942;ABP=22.0193;AC=138;AF=0.734043;AN=188;AO=4789;CIGAR=1X;DP=6274;DPB=6274;DPRA=16.8548;EPP=10315.5;EPPR=3145.34;GTI=4;LEN=1;MEANALT=1.11828;MQM=59.9843;MQMR=59.9096;NS=94;NUMALT=1;ODDS=0.148207;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170157;QR=52488;RO=1471;RPL=10;RPP=10315.5;RPPR=3145.34;RPR=4779;RUN=1;SAF=4789;SAP=10402.2;SAR=0;SRF=1471;SRP=3197.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:98:55,43:55:1964:43:1540:-109.392,0,-147.485	0/1:140:90,50:90:3211:50:1779:-118.248,0,-247.067	1/1:206:0,205:0:0:205:7293:-656.066,-61.7112,0	0/1:36:23,13:23:828:13:468:-31.6226,0,-64.007	0/1:17:11,6:11:387:6:216:-14.673,0,-30.0484	0/1:58:26,32:26:932:32:1152:-86.5304,0,-66.7391	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:100:49,51:49:1751:51:1803:-132.448,0,-127.77	1/1:82:0,82:0:0:82:2892:-260.516,-24.6845,0	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	1/1:68:0,68:0:0:68:2412:-217.335,-20.47,0	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:61:29,31:29:1044:31:1100:-80.8888,0,-75.8532	0/1:35:14,21:14:504:21:747:-57.0183,0,-35.162	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	0/1:36:19,17:19:684:17:604:-43.8535,0,-51.0532	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:111:0,111:0:0:111:3959:-356.502,-33.4143,0	1/1:151:0,151:0:0:151:5330:-479.839,-45.4555,0	0/1:53:40,13:40:1415:13:468:-26.5051,0,-111.639	0/1:61:32,28:32:1152:28:978:-69.9099,0,-85.5685	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:34:0,34:0:0:34:1203:-108.575,-10.235,0	1/1:138:1,137:1:36:137:4850:-433.058,-37.9439,0	0/1:157:70,87:70:2504:87:3108:-232.686,0,-178.349	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	1/1:154:0,154:0:0:154:5480:-493.311,-46.3586,0	1/1:142:0,142:0:0:142:5018:-451.77,-42.7463,0	0/1:55:29,25:29:1035:25:892:-63.9844,0,-76.834	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:9:6,3:6:216:3:99:-6.52731,0,-17.0812	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99521	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:135:73,62:73:2585:62:2201:-157.697,0,-192.259	1/1:56:0,55:0:0:55:1952:-175.596,-16.5567,0	1/1:30:0,30:0:0:30:1063:-95.9808,-9.0309,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:170:97,73:97:3455:73:2600:-183.074,0,-259.978	1/1:27:0,27:0:0:27:958:-86.5351,-8.12781,0	1/1:132:0,132:0:0:132:4671:-420.554,-39.736,0	1/1:64:0,64:0:0:64:2255:-203.211,-19.2659,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:91:35,55:35:1256:55:1963:-149.492,0,-85.8928	1/1:83:1,82:1:36:82:2914:-258.895,-21.3872,0	1/1:141:0,141:0:0:141:5035:-453.297,-42.4452,0	1/1:93:0,93:0:0:93:3311:-298.209,-27.9958,0	0/1:57:30,27:30:1059:27:954:-69.0138,0,-78.4617	1/1:119:0,119:0:0:119:4255:-383.129,-35.8226,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:75:0,75:0:0:75:2654:-239.104,-22.5773,0	0/1:112:61,51:61:2176:51:1823:-130.635,0,-162.377	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:117:0,117:0:0:117:4153:-373.956,-35.2205,0	0/1:29:12,17:12:428:17:604:-45.9607,0,-30.1289	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3745	0/1:52:28,24:28:991:24:860:-62.0683,0,-73.85	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.435	0/1:207:118,88:118:4195:88:3135:-220.004,0,-315.362	1/1:82:3,78:3:108:78:2761:-238.656,-14.6681,0	0/1:28:14,14:14:487:14:496:-36.5454,0,-35.7304	0/1:86:43,43:43:1540:43:1527:-111.834,0,-113.004	0/1:141:81,60:81:2883:60:2139:-150.332,0,-217.262	1/1:190:2,188:2:72:188:6647:-591.477,-50.359,0	0/1:17:2,15:2:72:15:532:-43.0956,0,-1.71921	0/1:43:25,15:25:896:15:519:-34.638,0,-68.4722	1/1:26:0,26:0:0:26:923:-83.3868,-7.82678,0	0/1:21:10,11:10:360:11:388:-28.9357,0,-26.4227	1/1:78:0,78:0:0:78:2783:-250.711,-23.4803,0	0/1:80:46,34:46:1636:34:1186:-82.9586,0,-123.446	1/1:68:0,68:0:0:68:2394:-215.716,-20.47,0	1/1:124:0,123:0:0:123:4373:-393.425,-37.0267,0	0/1:86:41,45:41:1468:45:1590:-117.5,0,-106.526	1/1:84:0,84:0:0:84:2993:-269.602,-25.2865,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:71:39,32:39:1383:32:1148:-82.2567,0,-103.395	1/1:103:0,103:0:0:103:3653:-328.954,-31.0061,0	1/1:102:0,102:0:0:102:3612:-325.287,-30.7051,0	0/1:48:23,25:23:815:25:883:-65.338,0,-59.2213	0/1:44:16,28:16:572:28:1004:-77.4305,0,-38.5681	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:111:0,111:0:0:111:3949:-355.602,-33.4143,0	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/1:53:20,33:20:720:33:1179:-90.4635,0,-49.1742	0/1:40:17,23:17:612:23:811:-61.2688,0,-43.3722	0/1:24:12,12:12:428:12:428:-31.6341,0,-31.6341	0/1:37:17,20:17:608:20:716:-53.6296,0,-43.9139	0/1:80:50,30:50:1796:30:1072:-72.7101,0,-137.84	1/1:73:0,71:0:0:71:2530:-227.591,-21.3731,0	1/1:82:0,82:0:0:82:2911:-262.226,-24.6845,0
chr09	23516083	.	A	G	25066.8	PASS	AB=0.526109;ABP=19.5651;AC=50;AF=0.265957;AN=188;AO=1482;CIGAR=1X;DP=6304;DPB=6304;DPRA=0.834819;EPP=3221.13;EPPR=10460.8;GTI=4;LEN=1;MEANALT=1.03774;MQM=59.9123;MQMR=59.9776;NS=94;NUMALT=1;ODDS=0.138381;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52936;QR=172820;RO=4820;RPL=1482;RPP=3221.13;RPPR=10460.8;RPR=0;RUN=1;SAF=1482;SAP=3221.13;SAR=0;SRF=4820;SRP=10469.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:95:41,54:41:1476:54:1928:-145.185,0,-104.538	0/1:139:50,89:50:1788:89:3165:-243.231,0,-119.359	0/0:204:204,0:204:7324:0:0:0,-61.4101,-659.206	0/1:35:13,22:13:468:22:792:-61.0696,0,-31.9236	0/1:18:6,12:6:216:12:420:-32.7155,0,-14.372	0/1:58:32,26:32:1152:26:932:-66.7391,0,-86.5304	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:102:52,50:52:1856:50:1796:-131.217,0,-136.615	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:59:31,28:31:1116:28:1004:-72.9151,0,-82.9909	0/1:35:20,15:20:716:15:540:-38.4005,0,-54.2317	0/1:24:14,10:14:500:10:343:-23.9758,0,-38.1115	0/1:36:17,19:17:604:19:680:-50.6921,0,-43.8535	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:111:110,1:110:3932:1:36:0,-29.8161,-350.475	0/0:155:155,0:155:5561:0:0:0,-46.6596,-500.61	0/1:55:15,40:15:540:40:1407:-110.363,0,-32.3799	0/1:62:29,33:29:1032:33:1184:-88.2045,0,-74.5296	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:138:138,0:138:4944:0:0:0,-41.5421,-445.109	0/1:159:89,70:89:3188:70:2484:-175.946,0,-239.28	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	0/0:156:156,0:156:5588:0:0:0,-46.9607,-503.025	0/0:150:150,0:150:5383:0:0:0,-45.1545,-484.599	0/1:57:28,29:28:1008:29:1040:-76.7419,0,-73.0195	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:2:1,1:1:36:1:36:-2.99521,0,-2.99621	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:136:61,75:61:2192:75:2680:-200.488,0,-156.605	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:30:30,0:30:1055:0:0:0,-9.0309,-95.26	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:171:74,96:74:2660:96:3427:-257.098,0,-188.11	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:130:130,0:130:4656:0:0:0,-39.1339,-419.202	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:90:54,36:54:1936:36:1296:-89.8512,0,-147.424	0/0:83:82,1:82:2948:1:36:0,-21.3872,-261.955	0/0:137:137,0:137:4920:0:0:0,-41.2411,-442.893	0/0:94:94,0:94:3369:0:0:0,-28.2968,-303.424	0/1:59:27,32:27:968:32:1135:-84.6973,0,-69.665	0/0:121:121,0:121:4336:0:0:0,-36.4246,-390.415	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.633	0/1:114:51,63:51:1832:63:2254:-168.792,0,-130.843	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:18:8,10:8:288:10:352:-26.5941,0,-20.8489	0/1:52:24,28:24:864:28:1004:-75.0223,0,-62.429	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/1:5:1,4:1:36:4:134:-10.8838,0,-2.09312	0/1:206:91,115:91:3272:115:4111:-308.163,0,-232.687	0/0:86:83,3:83:2984:3:108:0,-15.8134,-258.716	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/1:87:43,44:43:1544:44:1571:-115.491,0,-113.063	0/1:143:61,81:61:2192:81:2908:-218.849,0,-154.439	0/0:192:190,2:190:6817:2:72:0,-50.961,-606.76	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	0/1:44:15,29:15:540:29:1044:-80.8391,0,-35.6912	0/0:25:25,0:25:869:0:0:0,-7.52575,-78.5239	0/1:21:11,10:11:392:10:360:-26.4227,0,-29.2984	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:79:34,45:34:1224:45:1612:-121.589,0,-86.6857	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.974	0/0:128:128,0:128:4593:0:0:0,-38.5318,-413.531	0/1:91:49,42:49:1760:42:1486:-106.639,0,-131.29	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:71:32,39:32:1148:39:1391:-104.115,0,-82.2567	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.011	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:49:26,23:26:932:23:824:-59.7328,0,-69.4484	0/1:45:29,16:29:1028:16:572:-38.2671,0,-79.2867	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/0:110:110,0:110:3943:0:0:0,-33.1133,-355.061	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:53:33,20:33:1184:20:712:-48.4521,0,-90.9137	0/1:41:24,17:24:860:17:608:-42.7098,0,-65.3796	0/1:24:12,12:12:424:12:428:-31.6341,0,-31.2717	0/1:39:20,19:20:716:19:680:-49.789,0,-53.0275	0/1:79:30,49:30:1076:49:1756:-134.543,0,-73.3715	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432
chr09	23517917	.	C	T	28459.5	PASS	AB=0.540612;ABP=46.5747;AC=49;AF=0.260638;AN=188;AO=1660;CIGAR=1X;DP=7370;DPB=7370;DPRA=0.876488;EPP=3581.64;EPPR=11982;GTI=2;LEN=1;MEANALT=1.08929;MQM=57.1163;MQMR=59.2206;NS=94;NUMALT=1;ODDS=0.645783;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59447;QR=203494;RO=5703;RPL=3;RPP=3581.64;RPPR=11982;RPR=1657;RUN=1;SAF=1660;SAP=3607.65;SAR=0;SRF=5703;SRP=12386.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:167:85,82:85:3044:82:2948:-215.015,0,-223.415	0/1:69:24,45:24:855:45:1585:-121.744,0,-56.1798	0/0:106:105,1:105:3755:1:36:0,-28.3109,-334.286	0/1:56:23,33:23:824:33:1184:-89.9446,0,-57.6194	0/1:27:11,16:11:392:16:571:-43.5232,0,-27.4889	0/1:97:49,48:49:1756:48:1724:-125.951,0,-128.779	0/0:118:118,0:118:4194:0:0:0,-35.5215,-376.402	0/1:70:22,48:22:788:48:1713:-133.344,0,-50.1645	0/0:127:126,0:126:4507:0:0:0,-37.9298,-405.273	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.402	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.433	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.597	0/0:93:93,0:93:3302:0:0:0,-27.9958,-297.15	0/1:63:24,39:24:851:39:1385:-105.805,0,-57.9204	0/1:38:16,22:16:568:22:792:-60.0285,0,-40.0127	0/1:108:55,53:55:1963:53:1899:-138.548,0,-144.318	0/1:61:32,29:32:1148:29:1044:-75.4289,0,-85.2507	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.923	0/0:137:137,0:137:4905:0:0:0,-41.2411,-441.178	0/0:107:107,0:107:3764:0:0:0,-32.2102,-338.879	0/1:87:24,63:24:851:63:2234:-175.102,0,-50.7198	0/1:18:9,9:9:324:9:324:-24.0637,0,-24.0734	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.323	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8453	0/0:267:267,0:267:9506:0:0:0,-80.375,-855.326	0/1:145:60,85:60:2148:85:3026:-228.459,0,-148.369	0/1:36:16,20:16:568:20:720:-54.2447,0,-40.6146	0/0:205:205,0:205:7340:0:0:0,-61.7111,-660.144	0/0:93:93,0:93:3332:0:0:0,-27.9958,-298.644	0/1:67:33,34:33:1175:34:1220:-89.853,0,-85.6979	0/0:20:20,0:20:697:0:0:0,-6.0206,-63.0227	0/1:5:1,4:1:36:4:144:-11.7989,0,-2.09312	0/1:15:8,7:8:288:7:243:-17.6554,0,-21.752	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.4957	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:185:88,97:88:3132:97:3479:-257.553,0,-225.948	0/0:118:118,0:118:4197:0:0:0,-35.5215,-377.843	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.7	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	0/1:93:33,60:33:1188:60:2148:-165.261,0,-79.2191	0/0:49:49,0:49:1764:0:0:0,-14.7505,-158.998	0/0:112:111,1:111:3954:1:36:0,-30.1171,-352.008	0/0:81:81,0:81:2904:0:0:0,-24.3834,-260.895	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.854	0/1:52:21,31:21:752:31:1116:-85.0857,0,-52.3383	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.605	0/0:143:141,1:141:5000:1:36:0,-39.5095,-446.475	0/0:117:117,0:117:4164:0:0:0,-35.2205,-374.6	0/1:123:68,54:68:2436:54:1940:-137.48,0,-182.359	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.43	0/1:6:5,1:5:176:1:36:-1.7895,0,-14.3788	0/0:58:58,0:58:2075:0:0:0,-17.4597,-186.987	0/1:32:15,17:15:531:17:612:-45.7723,0,-38.488	0/1:30:10,20:10:352:20:720:-55.9917,0,-22.7873	0/0:82:82,0:82:2927:0:0:0,-24.6845,-262.555	0/1:11:9,2:9:324:2:72:-3.52046,0,-25.8737	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5842	0/1:74:32,42:32:1139:42:1498:-112.468,0,-80.5101	0/0:122:121,1:121:4344:1:36:0,-33.1274,-386.444	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	0/1:168:85,83:85:3052:83:2988:-218.395,0,-224.148	0/0:137:137,0:137:4853:0:0:0,-41.2411,-436.822	0/1:83:46,37:46:1639:37:1320:-93.6879,0,-122.571	0/1:57:23,34:23:812:34:1213:-91.7587,0,-56.2091	0/1:102:52,50:52:1846:50:1799:-131.017,0,-134.048	0/0:130:129,1:129:4611:1:36:0,-35.5382,-411.169	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.556	0/1:50:23,27:23:820:27:972:-72.7464,0,-59.0664	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.627	0/1:24:11,13:11:388:13:468:-34.9641,0,-28.0188	0/0:60:60,0:60:2136:0:0:0,-18.0618,-192.483	0/1:67:33,34:33:1176:34:1224:-90.1906,0,-85.9788	0/0:116:116,0:116:4112:0:0:0,-34.9195,-370.223	0/0:126:125,1:125:4465:1:36:0,-34.3341,-397.852	0/1:62:17,45:17:608:45:1599:-125.365,0,-36.3849	0/0:91:88,2:88:3152:2:72:0,-20.6152,-277.051	0/1:19:10,9:10:356:9:324:-23.7859,0,-26.6501	0/1:75:36,39:36:1269:39:1400:-103.553,0,-91.9198	0/0:108:106,1:106:3779:1:36:0,-28.8968,-336.732	0/0:141:141,0:141:5031:0:0:0,-42.4452,-452.782	0/1:127:68,59:68:2436:59:2116:-151.542,0,-181.143	0/1:54:31,23:31:1103:23:819:-57.5856,0,-83.2949	0/0:89:89,0:89:3183:0:0:0,-26.7917,-286.382	0/0:169:168,1:168:6002:1:36:0,-47.2784,-536.53	0/1:49:24,25:24:856:25:887:-64.9686,0,-62.5881	0/1:70:28,41:28:1008:41:1472:-111.61,0,-69.8948	0/1:64:31,33:31:1116:33:1188:-87.1803,0,-81.4776	0/1:54:19,35:19:684:35:1257:-96.9316,0,-45.6347	0/1:108:58,50:58:2076:50:1800:-129.563,0,-154.562	0/1:60:18,42:18:644:42:1504:-117.43,0,-40.2095	0/0:75:75,0:75:2667:0:0:0,-22.5772,-239.228	0/0:92:91,0:91:3234:0:0:0,-27.3937,-290.658
chr09	23517922	.	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chr09	23539097	.	G	A	89123.1	PASS	AB=0.515264;ABP=7.38538;AC=143;AF=0.768817;AN=186;AO=4219;CIGAR=1X;DP=5276;DPB=5276;DPRA=0;EPP=9164.45;EPPR=2296.09;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.8391;MQMR=59.8693;NS=93;NUMALT=1;ODDS=5.45166;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149347;QR=37683;RO=1056;RPL=0;RPP=9164.45;RPPR=2296.09;RPR=4219;RUN=1;SAF=4219;SAP=9164.45;SAR=0;SRF=1056;SRP=2296.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1038:-93.7238,-9.0309,0	0/1:33:21,12:21:756:12:420:-28.2,0,-57.5731	0/1:73:44,29:44:1580:29:1032:-71.2087,0,-120.515	1/1:177:0,176:0:0:176:6220:-559.664,-52.9813,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:23:15,8:15:536:8:284:-18.9787,0,-41.6511	0/1:68:35,33:35:1245:33:1165:-84.684,0,-91.8826	1/1:37:0,37:0:0:37:1309:-118.052,-11.1381,0	0/1:59:21,38:21:748:38:1334:-102.595,0,-49.8812	1/1:59:0,59:0:0:59:2104:-189.601,-17.7608,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:88:0,88:0:0:88:3140:-282.698,-26.4906,0	1/1:81:0,81:0:0:81:2889:-260.231,-24.3834,0	1/1:47:0,47:0:0:47:1669:-150.495,-14.1484,0	0/1:61:24,37:24:849:37:1305:-99.3866,0,-58.365	0/1:45:23,22:23:816:22:780:-56.9767,0,-60.2154	0/1:20:11,9:11:396:9:309:-22.1192,0,-29.9621	0/1:28:13,15:13:468:15:536:-40.1417,0,-34.0308	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:139:0,139:0:0:139:4928:-443.662,-41.8432,0	0/1:51:27,24:27:956:24:841:-60.6525,0,-71.0032	0/1:59:29,30:29:1040:30:1072:-79.0288,0,-76.1536	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:43:0,43:0:0:43:1525:-137.541,-12.9443,0	1/1:112:0,112:0:0:112:3935:-354.258,-33.7154,0	0/1:158:66,92:66:2356:92:3238:-244.08,0,-164.736	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	1/1:171:0,171:0:0:171:6048:-544.321,-51.4761,0	1/1:65:0,65:0:0:65:2290:-206.359,-19.567,0	0/1:83:46,37:46:1648:37:1309:-93.0883,0,-123.623	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:14:0,14:0:0:14:485:-43.9761,-4.21442,0	0/1:141:64,77:64:2292:77:2718:-202.401,0,-164.095	1/1:70:0,70:0:0:70:2471:-222.568,-21.0721,0	1/1:27:0,27:0:0:27:964:-87.0759,-8.12781,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:67:31,36:31:1112:36:1288:-95.9541,0,-80.2223	1/1:30:0,30:0:0:30:1070:-96.612,-9.0309,0	1/1:61:0,61:0:0:61:2131:-192.054,-18.3628,0	1/1:25:0,25:0:0:25:873:-78.8561,-7.52575,0	1/1:50:0,50:0:0:50:1707:-153.877,-15.0515,0	0/1:61:29,32:29:1036:32:1117:-82.4726,0,-75.1895	1/1:61:0,61:0:0:61:2169:-195.473,-18.3628,0	1/1:97:0,97:0:0:97:3397:-305.913,-29.1999,0	1/1:65:0,65:0:0:65:2311:-208.244,-19.567,0	0/1:63:24,39:24:856:39:1392:-106.601,0,-58.3944	1/1:54:0,54:0:0:54:1901:-171.364,-16.2556,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:53:1,52:1:36:52:1841:-162.368,-12.3563,0	0/1:32:15,17:15:536:17:574:-42.343,0,-38.9419	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9019	1/1:82:0,82:0:0:82:2826:-254.554,-24.6845,0	0/1:36:14,22:14:504:22:784:-60.0292,0,-34.861	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:77:30,47:30:1065:47:1676:-127.943,0,-72.9804	1/1:88:0,88:0:0:88:3139:-282.724,-26.4906,0	.:.:.:.:.:.:.:.	0/1:154:64,90:64:2300:90:3179:-239.945,0,-160.902	1/1:50:0,50:0:0:50:1775:-160.013,-15.0515,0	0/1:28:14,14:14:504:14:485:-35.5481,0,-37.2693	0/1:40:20,20:20:712:20:712:-52.3655,0,-52.3655	0/1:122:83,39:83:2950:39:1388:-88.4933,0,-229.005	1/1:95:2,93:2:72:93:3294:-289.857,-21.7756,0	1/1:28:0,28:0:0:28:988:-89.2339,-8.42884,0	0/1:39:21,18:21:733:18:648:-46.9117,0,-54.5486	1/1:43:1,42:1:36:42:1494:-131.152,-9.34602,0	0/1:21:12,9:12:424:9:320:-22.8198,0,-32.1748	1/1:102:0,102:0:0:102:3603:-324.47,-30.7051,0	0/1:41:19,22:19:684:22:769:-57.1864,0,-49.5481	1/1:81:2,79:2:72:79:2804:-245.753,-17.5467,0	1/1:117:1,116:1:36:116:4134:-368.644,-31.6222,0	0/1:34:17,17:17:597:17:604:-44.4197,0,-43.8202	1/1:47:0,47:0:0:47:1665:-150.132,-14.1484,0	0/1:9:4,5:4:129:5:176:-13.4757,0,-9.21839	1/1:58:0,58:0:0:58:2057:-185.4,-17.4597,0	1/1:50:1,49:1:36:49:1725:-151.931,-11.4532,0	1/1:154:0,154:0:0:154:5459:-491.432,-46.3586,0	0/1:52:32,20:32:1135:20:712:-48.7531,0,-86.8045	0/1:46:23,23:23:828:23:820:-60.2053,0,-60.9967	1/1:35:0,35:0:0:35:1252:-112.949,-10.5361,0	1/1:91:0,91:0:0:91:3245:-292.261,-27.3937,0	0/1:21:9,12:9:320:12:432:-32.8996,0,-22.7485	0/1:59:22,37:22:775:37:1328:-102.06,0,-52.293	0/1:57:22,35:22:792:35:1256:-96.1816,0,-54.4461	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	0/1:53:24,29:24:856:29:1044:-78.3202,0,-61.4065	0/1:56:33,23:33:1173:23:809:-56.2706,0,-88.9895	1/1:126:0,126:0:0:126:4474:-402.801,-37.9298,0	1/1:82:0,82:0:0:82:2906:-261.774,-24.6845,0
chr09	23539145	.	C	T	16539.7	PASS	AB=0.4782;ABP=11.9097;AC=43;AF=0.231183;AN=186;AO=1033;CIGAR=1X;DP=5310;DPB=5310;DPRA=0.816938;EPP=2246.14;EPPR=9279.54;GTI=0;LEN=1;MEANALT=1.04444;MQM=59.8712;MQMR=59.8848;NS=93;NUMALT=1;ODDS=8.6516;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36692;QR=151781;RO=4272;RPL=1033;RPP=2246.14;RPPR=9270.86;RPR=0;RUN=1;SAF=1033;SAP=2246.14;SAR=0;SRF=4271;SRP=9270.86;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1086:0:0:0,-9.33193,-98.0465	0/1:35:14,21:14:485:21:719:-53.9302,0,-33.4409	0/1:73:30,43:30:1067:43:1531:-116.106,0,-74.3581	0/0:177:177,0:177:6271:0:0:0,-53.2823,-564.486	0/1:14:7,6:7:252:6:216:-15.5173,0,-18.7557	0/1:23:8,15:8:273:15:540:-42.0128,0,-17.9756	0/1:66:32,34:32:1125:34:1207:-89.0673,0,-81.6871	0/0:36:36,0:36:1264:0:0:0,-10.8371,-114.058	0/1:59:38,21:38:1351:21:748:-49.8812,0,-104.129	0/0:59:59,0:59:2084:0:0:0,-17.7608,-187.816	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:89:89,0:89:3142:0:0:0,-26.7917,-282.782	0/0:80:80,0:80:2835:0:0:0,-24.0824,-255.387	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.983	0/1:61:37,24:37:1316:24:847:-58.1859,0,-100.379	0/1:44:22,22:22:788:22:788:-57.9995,0,-57.9995	0/1:20:9,11:9:320:11:396:-29.9621,0,-23.1208	0/1:28:16,12:16:559:12:432:-30.7924,0,-42.208	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:62:62,0:62:2181:0:0:0,-18.6639,-196.553	0/0:140:140,0:140:5007:0:0:0,-42.1442,-450.771	0/1:50:25,25:25:876:25:887:-65.0966,0,-64.0994	0/1:57:29,28:29:1040:28:979:-71.263,0,-76.7495	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.173	0/0:113:113,0:113:4025:0:0:0,-34.0164,-362.438	0/1:153:92,61:92:3278:61:2143:-147.078,0,-249.182	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	0/0:175:175,0:175:6249:0:0:0,-52.6802,-562.492	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:83:38,45:38:1360:45:1612:-120.385,0,-97.7151	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3353	0/1:141:77,64:77:2755:64:2268:-161.937,0,-205.746	0/0:71:71,0:71:2531:0:0:0,-21.3731,-227.959	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.198	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:65:34,31:34:1224:31:1100:-79.7433,0,-90.8445	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.484	0/0:25:25,0:25:880:0:0:0,-7.52575,-79.4893	0/0:56:56,0:56:1985:0:0:0,-16.8577,-178.866	0/1:62:34,28:34:1215:28:1004:-72.0105,0,-90.9919	0/0:65:65,0:65:2308:0:0:0,-19.5669,-207.98	0/0:97:96,0:96:3427:0:0:0,-28.8989,-308.284	0/0:67:67,0:67:2369:0:0:0,-20.169,-213.449	0/1:63:38,25:38:1359:25:896:-61.9908,0,-103.643	0/0:56:56,0:56:1980:0:0:0,-16.8577,-178.472	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:53:51,1:51:1818:1:36:0,-12.4151,-160.301	0/1:32:17,15:17:612:15:536:-38.9419,0,-45.7805	0/1:8:4,4:4:144:4:144:-10.9019,0,-10.9054	0/0:84:84,0:84:2986:0:0:0,-25.2865,-268.962	0/1:38:24,14:24:847:14:504:-34.259,0,-65.1073	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:10:3,7:3:108:7:237:-18.6488,0,-7.06487	0/1:78:48,30:48:1708:30:1063:-72.4999,0,-130.523	0/0:87:87,0:87:3072:0:0:0,-26.1896,-276.706	.:.:.:.:.:.:.:.	0/1:156:91,65:91:3247:65:2328:-162.819,0,-245.487	0/0:50:49,0:49:1764:0:0:0,-14.7505,-158.684	0/1:29:16,13:16:561:13:453:-32.3698,0,-42.0873	0/1:42:22,20:22:780:20:720:-52.4855,0,-57.8798	0/1:120:38,82:38:1364:82:2893:-224.48,0,-86.9371	0/0:94:93,1:93:3336:1:36:0,-24.6985,-296.844	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:38:18,20:18:635:20:704:-52.2445,0,-46.0378	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.687	0/1:19:7,12:7:248:12:424:-32.7722,0,-16.9446	0/0:105:105,0:105:3698:0:0:0,-31.6081,-333.013	0/1:44:24,20:24:860:20:720:-51.8835,0,-64.4765	0/0:84:84,0:84:2972:0:0:0,-25.2865,-267.712	0/0:118:118,0:118:4198:0:0:0,-35.5215,-377.991	0/1:31:15,16:15:540:16:572:-42.4806,0,-39.6046	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.432	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.078	0/0:158:157,0:157:5566:0:0:0,-47.2617,-499.604	0/1:50:20,30:20:716:30:1059:-80.5689,0,-49.7162	0/1:48:25,23:25:874:23:828:-60.3947,0,-64.5163	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/0:91:91,0:91:3213:0:0:0,-27.3937,-289.39	0/1:22:14,8:14:500:8:288:-19.5724,0,-38.7135	0/1:58:36,22:36:1288:22:765:-51.6982,0,-98.7629	0/1:55:34,21:34:1188:21:752:-51.4487,0,-90.6593	0/1:20:14,6:14:496:6:216:-13.7699,0,-38.9537	0/1:54:29,25:29:1040:25:885:-63.7109,0,-77.6587	0/1:56:23,33:23:824:33:1180:-89.6451,0,-57.6256	0/0:128:128,0:128:4541:0:0:0,-38.5318,-408.831	0/0:83:83,0:83:2929:0:0:0,-24.9855,-263.845
chr09	23601824	.	ATCCG	ATCCT,GTCCT	394089	PASS	AB=0.494963,0.499587;ABP=4.34474,3.01927;AC=141,45;AF=0.758065,0.241935;AN=186;AO=11367,3050;CIGAR=4M1X,1X3M1X;DP=14505;DPB=14505.6;DPRA=0,0.903614;EPP=24651.4,6626;EPPR=7.35324;GTI=1;LEN=1,5;MEANALT=2.44086,2.7931;MQM=59.4611,49.743;MQMR=60;NS=93;NUMALT=2;ODDS=2.64535;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=54,54;PQR=0;PRO=0;QA=403767,105106;QR=70;RO=2;RPL=5707,1446;RPP=3.43229,20.7836;RPPR=7.35324;RPR=5660,1604;RUN=1,1;SAF=5709,1446;SAP=3.50718,20.7836;SAR=5658,1604;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:71:0,71,0:0:0:71,0:2520,0:-226.933,-21.3731,0,-226.933,-21.3731,-226.933	1/2:128:0,60,68:0:0:60,68:2148,2334:-362.964,-187.86,-169.798,-175.453,0,-154.983	1/2:219:0,114,104:0:0:114,104:4035,3612:-619.666,-291.163,-256.845,-328.599,0,-297.292	1/1:291:0,289,0:0:0:289,0:10255,0:-922.174,-86.9977,0,-922.174,-86.9977,-922.174	1/2:116:0,39,76:0:0:39,76:1395,2595:-321.398,-207.661,-195.921,-113.865,0,-90.9872	1/2:64:0,35,29:0:0:35,29:1226,981:-178.374,-78.9304,-68.3943,-99.7849,0,-91.055	1/2:122:0,63,59:0:0:63,59:2250,2025:-347.527,-164.122,-145.157,-183.754,0,-165.993	1/1:243:0,240,1:0:0:240,1:8464,36:-760.565,-72.2472,0,-757.663,-69.3284,-757.362	1/2:215:0,111,104:0:0:111,104:3899,3567:-604.035,-286.75,-253.336,-317.63,0,-286.323	1/1:201:0,200,0:0:0:200,0:7136,0:-641.794,-60.206,0,-641.794,-60.206,-641.794	1/1:136:0,135,0:0:0:135,0:4833,0:-434.497,-40.6391,0,-434.497,-40.6391,-434.497	1/1:204:0,201,1:0:0:201,1:7123,36:-640.401,-60.507,0,-637.481,-57.5729,-637.18	1/1:121:1,119,0:1:34:119,0:4259,0:-379.933,-33.017,0,-380.234,-35.8226,-382.992	1/1:153:0,153,0:0:0:153,0:5456,0:-491.059,-46.0576,0,-491.059,-46.0576,-491.059	1/2:117:0,68,48:0:0:68,48:2432,1683:-333.355,-135.239,-114.769,-198.132,0,-183.682	1/2:132:0,73,59:0:0:73,59:2588,2050:-376.621,-165.81,-143.835,-211.101,0,-193.34	1/2:145:0,74,71:0:0:74,71:2639,2474:-414.706,-199.578,-177.302,-215.478,0,-194.105	1/2:80:0,43,37:0:0:43,37:1522,1285:-226.151,-102.206,-89.2613,-124.291,0,-113.153	1/1:88:0,88,0:0:0:88,0:3114,0:-280.006,-26.4906,0,-280.006,-26.4906,-280.006	1/1:356:0,350,0:0:0:350,0:12373,0:-1112.74,-105.361,0,-1112.74,-105.361,-1112.74	1/1:254:0,253,0:0:0:253,0:9030,0:-811.801,-76.1606,0,-811.801,-76.1606,-811.801	1/2:107:0,38,69:0:0:38,69:1356,2353:-300.448,-190.128,-178.689,-110.67,0,-89.8994	1/2:173:0,87,81:0:0:87,81:3110,2749:-475.288,-221.753,-195.563,-253.546,0,-229.162	1/1:161:0,160,0:0:0:160,0:5681,0:-511.122,-48.1648,0,-511.122,-48.1648,-511.122	1/1:166:0,164,1:0:0:164,1:5795,36:-521.21,-49.3689,0,-518.295,-46.415,-517.994	1/1:412:0,410,0:0:0:410,0:14522,0:-1306.19,-123.422,0,-1306.19,-123.422,-1306.19	1/2:429:0,237,190:0:0:237,190:8439,6524:-1213.94,-526.195,-454.851,-687.754,0,-630.559	1/2:71:0,32,38:0:0:32,38:1139,1310:-198.728,-105.899,-96.266,-92.8887,0,-81.4495	1/1:364:0,360,2:0:0:360,2:12839,71:-1154.89,-108.371,0,-1149.12,-102.571,-1148.51	1/1:131:0,130,1:0:0:130,1:4612,36:-414.292,-39.1339,0,-411.365,-35.8484,-411.064	1/2:150:0,67,82:0:0:67,82:2378,2831:-422.133,-228.405,-208.236,-193.797,0,-169.113	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:24:0,13,11:0:0:13,11:468,388:-70.0078,-31.8274,-27.914,-38.5355,0,-35.2242	1/2:7:0,2,5:0:0:2,5:72,175:-20.3518,-14.4734,-13.8713,-6.23466,0,-4.72951	1/1:14:0,14,0:0:0:14,0:500,0:-45.3185,-4.21442,0,-45.3185,-4.21442,-45.3185	1/1:26:0,25,0:0:0:25,0:896,0:-80.5725,-7.52575,0,-80.5725,-7.52575,-80.5725	1/2:402:0,189,210:0:0:189,210:6685,7271:-1132.75,-588.317,-531.422,-544.459,0,-481.242	1/1:134:0,131,1:0:0:131,1:4659,30:-419.067,-39.4349,0,-416.675,-37.0239,-416.374	1/1:108:0,108,0:0:0:108,0:3851,0:-346.405,-32.5112,0,-346.405,-32.5112,-346.405	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:217:0,123,93:0:0:123,93:4349,3205:-612.773,-258.697,-221.671,-354.123,0,-326.127	1/1:51:0,50,0:0:0:50,0:1796,0:-161.518,-15.0515,0,-161.518,-15.0515,-161.518	1/1:225:0,223,0:0:0:223,0:7931,0:-713.345,-67.1297,0,-713.345,-67.1297,-713.345	1/1:185:0,185,0:0:0:185,0:6602,0:-594.19,-55.6906,0,-594.19,-55.6906,-594.19	1/1:144:0,144,0:0:0:144,0:5094,0:-458.421,-43.3483,0,-458.421,-43.3483,-458.421	1/2:161:0,79,80:0:0:79,80:2824,2758:-453.761,-223.499,-199.717,-230.323,0,-206.24	1/1:197:0,195,1:0:0:195,1:6848,31:-615.944,-58.7009,0,-613.461,-56.1763,-613.16	1/1:195:0,194,0:0:0:194,0:6876,0:-618.3,-58.3998,0,-618.3,-58.3998,-618.3	1/1:160:0,160,0:0:0:160,0:5692,0:-512.04,-48.1648,0,-512.04,-48.1648,-512.04	1/2:217:0,93,123:0:0:93,123:3310,4219:-609.757,-340.004,-312.008,-269.744,0,-232.717	1/2:236:0,131,105:0:0:131,105:4646,3633:-672.486,-294.024,-254.589,-378.812,0,-347.203	1/2:8:0,5,3:0:0:5,3:180,108:-23.8404,-9.15289,-7.64774,-15.0469,0,-14.1438	1/1:282:0,282,0:0:0:282,0:10035,0:-902.869,-84.8905,0,-902.869,-84.8905,-902.869	1/2:53:0,34,19:0:0:34,19:1220,649:-152.453,-52.9289,-42.6939,-99.8718,0,-94.1522	1/2:5:0,1,4:0:0:1,4:36,124:-13.0878,-10.1401,-9.83908,-3.2968,0,-2.09268	1/1:222:0,217,0:0:0:217,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chr09	23601852	.	CC	TT,TC	159099	PASS	AB=0.509904,0.489776;ABP=5.67712,5.85195;AC=141,45;AF=0.758065,0.241935;AN=186;AO=5781,1543;CIGAR=2X,1X1M;DP=7327;DPB=7327;DPRA=79.6304,0.847136;EPP=12374.6,3293.07;EPPR=5.18177;GTI=1;LEN=2,1;MEANALT=1.53261,2;MQM=59.4195,50.9384;MQMR=49;NS=93;NUMALT=2;ODDS=2.33131;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=205480,54721;QR=36;RO=1;RPL=5763,1536;RPP=12400.4,3293.07;RPPR=5.18177;RPR=18,7;RUN=1,1;SAF=3,0;SAP=12530.2,3353.59;SAR=5778,1543;SRF=0;SRP=5.18177;SRR=1;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40,0:0:0:40,0:1434,0:-129.329,-12.0412,0,-129.329,-12.0412,-129.329	1/2:45:0,17,28:0:0:17,28:612,1000:-131.341,-81.4032,-76.2857,-50.2959,0,-41.8671	1/2:112:0,59,53:0:0:59,53:2075,1860:-319.491,-150.588,-132.827,-169.253,0,-153.299	1/1:163:0,163,0:0:0:163,0:5803,0:-521.979,-49.0679,0,-521.979,-49.0679,-521.979	1/2:55:0,24,31:0:0:24,31:862,1112:-159.857,-89.5571,-82.3324,-70.6563,0,-61.3243	1/2:16:0,10,6:0:0:10,6:356,216:-46.8013,-17.877,-14.8667,-29.281,0,-27.4748	1/2:57:0,31,26:0:0:31,26:1090,932:-164.775,-76.0541,-66.7222,-89.0749,0,-81.2481	1/1:34:0,34,0:0:0:34,0:1209,0:-109.076,-10.235,0,-109.076,-10.235,-109.076	1/2:123:0,65,58:0:0:65,58:2301,2067:-354.658,-167.281,-147.714,-187.731,0,-170.271	1/1:66:0,66,0:0:0:66,0:2352,0:-211.814,-19.868,0,-211.814,-19.868,-211.814	1/1:97:0,97,0:0:0:97,0:3472,0:-312.421,-29.1999,0,-312.421,-29.1999,-312.421	1/1:114:0,113,0:0:0:113,0:4034,0:-362.504,-34.0164,0,-362.504,-34.0164,-362.504	1/1:69:0,69,0:0:0:69,0:2474,0:-222.049,-20.7711,0,-222.049,-20.7711,-222.049	1/1:84:0,84,0:0:0:84,0:2998,0:-269.993,-25.2865,0,-269.993,-25.2865,-269.993	1/2:61:0,35,26:0:0:35,26:1250,928:-177.762,-75.8497,-65.3137,-102.268,0,-94.4417	1/2:89:0,50,39:0:0:50,39:1796,1400:-260.194,-113.709,-98.6571,-146.843,0,-135.103	1/2:61:0,28,33:0:0:28,33:1004,1172:-177.053,-95.1626,-86.7338,-82.2457,0,-72.3117	1/2:28:0,15,13:0:0:15,13:533,451:-79.6068,-36.1656,-31.6502,-43.7881,0,-39.8747	1/1:61:0,61,0:0:0:61,0:2155,0:-194.099,-18.3628,0,-194.099,-18.3628,-194.099	1/1:163:0,163,0:0:0:163,0:5797,0:-521.806,-49.0679,0,-521.806,-49.0679,-521.806	1/1:143:0,143,0:0:0:143,0:5081,0:-457.203,-43.0473,0,-457.203,-43.0473,-457.203	1/2:58:0,23,35:0:0:23,35:815,1225:-166.035,-99.7986,-92.8749,-66.5883,0,-56.0522	1/2:106:0,63,43:0:0:63,43:2238,1509:-304.216,-121.887,-102.923,-182.679,0,-169.735	1/1:39:0,39,0:0:0:39,0:1398,0:-126.084,-11.7402,0,-126.084,-11.7402,-126.084	1/1:89:0,89,0:0:0:89,0:3176,0:-286.002,-26.7917,0,-286.002,-26.7917,-286.002	1/1:180:0,180,0:0:0:180,0:6407,0:-576.591,-54.1854,0,-576.591,-54.1854,-576.591	1/2:268:0,152,116:0:0:152,116:5392,4113:-772.767,-333.533,-287.776,-439.588,0,-404.669	1/2:33:0,19,14:0:0:19,14:682,500:-96.3945,-40.7604,-35.0408,-55.9903,0,-51.7759	1/1:211:0,211,0:0:0:211,0:7468,0:-672.09,-63.5173,0,-672.09,-63.5173,-672.09	1/1:39:0,39,0:0:0:39,0:1368,0:-123.392,-11.7402,0,-123.392,-11.7402,-123.392	1/2:73:0,33,40:0:0:33,40:1150,1409:-208.224,-114.717,-104.783,-93.8567,0,-81.8155	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:20:0,11,9:0:0:11,9:383,324:-57.82,-26.6929,-23.3815,-31.4809,0,-28.7716	1/2:4:0,1,3:0:0:1,3:36,104:-11.6971,-8.75594,-8.45491,-3.29724,0,-2.39415	1/1:12:0,12,0:0:0:12,0:412,0:-37.4051,-3.61236,0,-37.4051,-3.61236,-37.4051	1/1:26:0,26,0:0:0:26,0:914,0:-82.5378,-7.82678,0,-82.5378,-7.82678,-82.5378	1/2:178:0,90,88:0:0:90,88:3201,3152:-517.293,-256.44,-229.347,-261.209,0,-234.718	1/1:63:0,63,0:0:0:63,0:2226,0:-200.291,-18.9649,0,-200.291,-18.9649,-200.291	1/1:67:0,67,0:0:0:67,0:2390,0:-215.255,-20.169,0,-215.255,-20.169,-215.255	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:130:0,64,66:0:0:64,66:2290,2346:-377.069,-190.353,-171.087,-187.071,0,-167.203	1/1:31:0,31,0:0:0:31,0:1114,0:-100.572,-9.33193,0,-100.572,-9.33193,-100.572	1/1:97:0,97,0:0:0:97,0:3442,0:-309.901,-29.1999,0,-309.901,-29.1999,-309.901	1/1:81:0,81,0:0:0:81,0:2910,0:-262.115,-24.3834,0,-262.115,-24.3834,-262.115	1/1:61:0,61,0:0:0:61,0:2133,0:-192.097,-18.3628,0,-192.097,-18.3628,-192.097	1/2:103:0,54,49:0:0:54,49:1907,1701:-293.544,-138.254,-121.998,-155.639,0,-140.888	1/1:105:0,105,0:0:0:105,0:3743,0:-337.006,-31.6082,0,-337.006,-31.6082,-337.006	1/1:66:0,66,0:0:0:66,0:2340,0:-210.853,-19.868,0,-210.853,-19.868,-210.853	1/1:78:0,78,0:0:0:78,0:2766,0:-249.084,-23.4803,0,-249.084,-23.4803,-249.084	1/2:73:0,31,42:0:0:31,42:1116,1469:-210.535,-119.476,-110.144,-91.4136,0,-78.7703	1/2:99:0,53,46:0:0:53,46:1869,1621:-284.28,-132.124,-116.169,-152.508,0,-138.661	1/2:8:0,4,4:0:0:4,4:144,140:-23.4738,-11.7189,-10.5148,-12.1095,0,-10.9054	1/1:178:0,178,0:0:0:178,0:6321,0:-568.883,-53.5833,0,-568.883,-53.5833,-568.883	1/2:42:0,25,17:0:0:25,17:896,608:-122.935,-49.8573,-42.3316,-73.4348,0,-68.3173	2/2:1:0,0,1:0:0:0,1:0,36:-3.57877,-3.57877,-3.57877,-0.30103,-0.30103,0	1/1:139:0,139,0:0:0:139,0:4933,0:-443.971,-41.8432,0,-443.971,-41.8432,-443.971	1/2:39:0,25,14:0:0:25,14:894,489:-112.445,-39.5392,-32.0135,-73.254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chr09	23601864	.	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chr09	23625902	.	A	T	117098	PASS	AB=0.482309;ABP=11.769;AC=148;AF=0.787234;AN=188;AO=5518;CIGAR=1X;DP=7212;DPB=7212;DPRA=15.4989;EPP=11933.1;EPPR=3627.28;GTI=2;LEN=1;MEANALT=1.07527;MQM=59.8677;MQMR=59.8855;NS=94;NUMALT=1;ODDS=0.209499;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196776;QR=60385;RO=1685;RPL=6;RPP=11933.1;RPPR=3627.28;RPR=5512;RUN=1;SAF=0;SAP=11985.2;SAR=5518;SRF=0;SRP=3661.94;SRR=1685;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:73:0,73:0:0:73:2547:-229.011,-21.9752,0	0/1:66:32,34:32:1144:34:1194:-87.8933,0,-83.4015	1/1:119:0,119:0:0:119:4241:-381.866,-35.8226,0	0/1:297:138,159:138:4927:159:5701:-423.799,0,-353.548	1/1:46:1,45:1:36:45:1619:-142.402,-10.2491,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:98:0,98:0:0:98:3493:-314.345,-29.5009,0	0/1:147:80,67:80:2854:67:2389:-171.013,0,-212.841	1/1:66:0,66:0:0:66:2353:-212.026,-19.868,0	1/1:31:0,30:0:0:30:1076:-96.7931,-9.0309,0	0/1:82:31,51:31:1108:51:1812:-138.666,0,-75.3465	0/1:41:25,16:25:900:16:572:-39.4703,0,-68.9788	1/1:28:0,28:0:0:28:1004:-90.675,-8.42884,0	0/1:61:30,31:30:1067:31:1116:-82.3889,0,-77.9784	1/1:41:1,40:1:36:40:1432:-125.575,-8.74396,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:24:10,14:10:356:14:504:-38.4734,0,-25.1565	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:187:109,78:109:3904:78:2781:-194.237,0,-295.261	1/1:128:0,128:0:0:128:4551:-409.754,-38.5318,0	0/1:94:70,24:70:2520:24:845:-48.0657,0,-198.752	0/1:78:42,36:42:1512:36:1273:-91.3906,0,-112.894	1/1:99:1,98:1:36:98:3515:-312.938,-26.2037,0	1/1:77:0,77:0:0:77:2738:-246.661,-23.1793,0	0/1:249:133,116:133:4775:116:4110:-295.09,0,-354.948	1/1:213:0,213:0:0:213:7562:-680.573,-64.1194,0	1/1:36:0,36:0:0:36:1285:-115.952,-10.8371,0	1/1:216:0,215:0:0:215:7699:-692.58,-64.7215,0	0/1:73:44,29:44:1576:29:1029:-70.9468,0,-119.66	1/1:78:0,78:0:0:78:2793:-251.604,-23.4803,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.62776	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83577,-0.60206,0	1/1:17:0,17:0:0:17:582:-52.6979,-5.11751,0	0/1:152:64,87:64:2304:87:3102:-233.588,0,-161.805	0/1:99:35,64:35:1252:64:2288:-176.378,0,-83.1831	1/1:33:0,33:0:0:33:1176:-106.146,-9.93399,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:133:0,133:0:0:133:4686:-421.773,-40.037,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:145:0,143:0:0:143:5120:-460.577,-43.0473,0	1/1:40:0,40:0:0:40:1438:-129.718,-12.0412,0	1/1:48:0,48:0:0:48:1711:-154.185,-14.4494,0	0/1:134:70,63:70:2508:63:2252:-162.546,0,-185.386	0/1:104:52,52:52:1860:52:1856:-135.937,0,-136.372	1/1:169:1,168:1:36:168:5994:-535.964,-47.2758,0	1/1:98:0,98:0:0:98:3493:-314.581,-29.5009,0	0/1:82:46,36:46:1648:36:1296:-92.2595,0,-123.923	1/1:124:0,124:0:0:124:4422:-398.146,-37.3277,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:110:0,110:0:0:110:3923:-353.262,-33.1133,0	1/1:70:0,70:0:0:70:2510:-226.151,-21.0721,0	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:134:80,54:80:2876:54:1925:-133.188,0,-218.738	0/1:54:31,23:31:1108:23:802:-56.2386,0,-83.7754	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:55:0,55:0:0:55:1957:-176.404,-16.5567,0	0/1:65:33,32:33:1188:32:1152:-84.4209,0,-86.8832	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:125:66,59:66:2372:59:2097:-151.365,0,-176.109	1/1:133:2,131:2:72:131:4643:-411.189,-33.2003,0	0/1:65:28,37:28:1008:37:1324:-99.8933,0,-71.4648	1/1:114:2,112:2:72:112:4011:-354.344,-27.4832,0	0/1:130:64,64:64:2296:64:2277:-166.335,0,-168.053	1/1:119:2,117:2:72:117:4156:-367.386,-28.9858,0	0/1:16:7,9:7:248:9:320:-24.325,0,-17.8477	1/1:36:0,36:0:0:36:1279:-115.401,-10.8371,0	1/1:37:2,35:2:68:35:1256:-106.889,-4.68174,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	1/1:108:0,108:0:0:108:3817:-343.656,-32.5112,0	1/1:78:0,78:0:0:78:2800:-252.21,-23.4803,0	1/1:60:0,59:0:0:59:2124:-191.068,-17.7608,0	0/1:136:72,64:72:2580:64:2300:-166.32,0,-191.509	1/1:61:2,59:2:72:59:2098:-182.247,-11.5261,0	0/1:67:34,33:34:1211:33:1188:-87.0587,0,-89.1247	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5511	0/1:100:53,47:53:1900:47:1664:-119.941,0,-141.173	1/1:96:2,94:2:72:94:3341:-294.064,-22.0622,0	1/1:205:0,205:0:0:205:7290:-655.996,-61.7112,0	0/1:39:17,22:17:612:22:788:-59.5046,0,-43.6733	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:123:55,68:55:1968:68:2440:-182.827,0,-140.364	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:43:25,18:25:891:18:648:-45.7076,0,-67.4946	1/1:51:0,51:0:0:51:1825:-164.529,-15.3525,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:43:16,27:16:576:27:957:-73.4996,0,-39.2307	0/1:50:37,13:37:1324:13:468:-27.4081,0,-104.411	1/1:139:0,139:0:0:139:4954:-445.995,-41.8432,0	1/1:86:0,86:0:0:86:3084:-277.783,-25.8886,0
chr09	23625911	.	GCTC	ACTC,ACTT	157812	PASS	AB=0.478834,0.519018;ABP=15.6954,13.2522;AC=148,40;AF=0.787234,0.212766;AN=188;AO=5542,1709;CIGAR=1X3M,1X2M1X;DP=7265;DPB=7265;DPRA=15.6129,1.29687;EPP=11916,3679.39;EPPR=5.18177;GTI=3;LEN=1,4;MEANALT=1.63441,2.17021;MQM=59.8934,59.8994;MQMR=60;NS=94;NUMALT=2;ODDS=0.319182;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=198313,60413;QR=36;RO=1;RPL=5528,1705;RPP=11916,3679.39;RPPR=5.18177;RPR=14,4;RUN=1,1;SAF=0,0;SAP=12037.3,3714.06;SAR=5542,1709;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:71:0,70,0:0:0:70,0:2516,0:-226.343,-21.0721,0,-226.343,-21.0721,-226.343	1/2:68:0,35,33:0:0:35,33:1241,1171:-196.865,-95.7634,-85.2274,-101.456,0,-91.5225	1/1:121:0,121,0:0:0:121,0:4352,0:-391.848,-36.4246,0,-391.848,-36.4246,-391.848	1/2:301:0,158,141:0:0:158,141:5653,4959:-864.633,-403.661,-356.099,-461.074,0,-418.629	1/1:45:0,44,1:0:0:44,1:1584,36:-142.492,-13.2453,0,-139.554,-9.94808,-139.253	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:64:0,64,0:0:0:64,0:2292,0:-206.541,-19.2659,0,-206.541,-19.2659,-206.541	1/1:98:0,98,0:0:0:98,0:3495,0:-314.756,-29.5009,0,-314.756,-29.5009,-314.756	1/2:148:0,65,83:0:0:65,83:2332,2934:-429.517,-239.302,-219.735,-190.572,0,-165.586	1/1:63:0,63,0:0:0:63,0:2252,0:-202.942,-18.9649,0,-202.942,-18.9649,-202.942	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/2:85:0,53,32:0:0:53,32:1904,1129:-247.542,-92.2838,-76.3292,-155.613,0,-145.98	1/2:43:0,16,27:0:0:16,27:576,938:-123.605,-76.603,-71.7865,-47.3576,0,-39.2298	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3145,-8.42884,0,-90.3145,-8.42884,-90.3145	1/2:60:0,30,30:0:0:30,30:1072,1072:-175.166,-87.7619,-78.731,-87.7616,0,-78.7307	1/1:39:0,39,0:0:0:39,0:1391,0:-125.486,-11.7402,0,-125.486,-11.7402,-125.486	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/2:24:0,15,9:0:0:15,9:540,324:-70.8578,-26.7966,-22.2811,-44.4211,0,-41.7118	1/2:19:0,10,9:0:0:10,9:360,323:-56.0806,-26.7058,-23.6955,-29.734,0,-27.0247	1/2:195:0,82,113:0:0:82,113:2922,3998:-564.169,-325.995,-301.311,-238.528,0,-204.512	1/1:128:0,128,0:0:0:128,0:4591,0:-413.353,-38.5318,0,-413.353,-38.5318,-413.353	1/2:96:0,25,71:0:0:25,71:900,2489:-276.325,-202.887,-195.361,-73.7953,0,-52.4221	1/2:78:0,36,42:0:0:36,42:1288,1489:-226.692,-121.661,-110.824,-105.387,0,-92.7432	1/1:100:0,98,1:0:0:98,1:3492,35:-314.142,-29.5009,0,-311.295,-26.6532,-310.994	1/1:76:0,76,0:0:0:76,0:2711,0:-244.234,-22.8783,0,-244.234,-22.8783,-244.234	1/2:250:0,116,134:0:0:116,134:4149,4734:-724.203,-385.885,-350.966,-338.673,0,-298.335	1/1:215:0,215,0:0:0:215,0:7711,0:-693.859,-64.7215,0,-693.859,-64.7215,-693.859	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/1:214:0,214,0:0:0:214,0:7669,0:-690.235,-64.4204,0,-690.235,-64.4204,-690.235	1/2:76:0,29,47:0:0:29,47:1044,1658:-220.433,-135.245,-126.515,-85.5449,0,-71.3965	1/1:80:0,79,0:0:0:79,0:2828,0:-254.454,-23.7814,0,-254.454,-23.7814,-254.454	1/2:4:0,2,1:0:0:2,1:72,36:-8.81263,-2.93767,-2.33561,-5.87517,0,-5.57414	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:3:0,3,0:0:0:3,0:108,0:-10.0733,-0.90309,0,-10.0733,-0.90309,-10.0733	1/1:17:0,17,0:0:0:17,0:608,0:-55.0511,-5.11751,0,-55.0511,-5.11751,-55.0511	1/2:153:0,87,66:0:0:87,66:3116,2354:-446.369,-192.249,-166.06,-254.477,0,-234.609	1/2:99:0,63,36:0:0:63,36:2251,1271:-287.386,-103.855,-84.89,-183.886,0,-173.049	1/1:33:0,33,0:0:0:33,0:1175,0:-106.055,-9.93399,0,-106.055,-9.93399,-106.055	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:135:0,134,0:0:0:134,0:4801,0:-431.722,-40.338,0,-431.722,-40.338,-431.722	1/1:24:0,24,0:0:0:24,0:855,0:-77.2702,-7.22472,0,-77.2702,-7.22472,-77.2702	1/1:147:0,147,0:0:0:147,0:5264,0:-473.874,-44.2514,0,-473.874,-44.2514,-473.874	1/1:40:0,40,0:0:0:40,0:1440,0:-129.898,-12.0412,0,-129.898,-12.0412,-129.898	1/1:48:0,48,0:0:0:48,0:1715,0:-154.434,-14.4494,0,-154.434,-14.4494,-154.434	1/2:133:0,62,70:0:0:62,70:2228,2473:-383.239,-201.474,-182.811,-181.888,0,-160.816	1/2:104:0,51,53:0:0:51,53:1828,1845:-299.393,-150.372,-135.02,-149.374,0,-133.42	1/1:173:0,172,1:0:0:172,1:6121,36:-550.632,-51.7772,0,-547.695,-48.4799,-547.394	1/1:98:0,98,0:0:0:98,0:3512,0:-316.29,-29.5009,0,-316.29,-29.5009,-316.29	1/2:80:0,34,46:0:0:34,46:1216,1622:-231.576,-132.42,-122.185,-99.5115,0,-85.6642	1/1:125:0,125,0:0:0:125,0:4488,0:-404.082,-37.6288,0,-404.082,-37.6288,-404.082	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:111:0,111,0:0:0:111,0:3967,0:-357.22,-33.4143,0,-357.22,-33.4143,-357.22	1/1:69:0,69,0:0:0:69,0:2457,0:-221.384,-20.7711,0,-221.384,-20.7711,-221.384	1/2:20:0,10,10:0:0:10,10:360,349:-58.1151,-28.7355,-25.7252,-29.734,0,-26.7237	1/2:137:0,56,81:0:0:56,81:1996,2843:-394.426,-231.727,-214.869,-163.054,0,-138.67	1/2:57:0,24,33:0:0:24,33:860,1171:-165.859,-95.7636,-88.5388,-70.4521,0,-60.5181	1/2:8:0,3,5:0:0:3,5:108,169:-22.8572,-14.0367,-13.1336,-9.17208,0,-7.66693	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:58:0,58,0:0:0:58,0:2076,0:-187.111,-17.4597,0,-187.111,-17.4597,-187.111	1/2:65:1,32,31:1:36:32,31:1148,1102:-180.259,-86.9204,-80.2251,-90.7572,0,-84.3628	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:125:0,57,67:0:0:57,67:2040,2369:-359.406,-193.048,-175.889,-166.461,0,-146.292	1/1:130:0,127,2:0:0:127,2:4548,67:-409.138,-38.2308,0,-403.712,-32.8213,-403.11	1/2:65:0,37,28:0:0:37,28:1313,989:-187.864,-80.8912,-69.7531,-107.327,0,-98.8981	1/1:114:0,112,1:0:0:112,1:4012,36:-360.951,-33.7154,0,-358.013,-30.733,-357.712	1/2:129:0,65,64:0:0:65,64:2336,2275:-376.234,-185.746,-166.179,-190.845,0,-171.579	1/1:118:0,116,2:0:0:116,2:4139,72:-372.332,-34.9195,0,-366.457,-28.6848,-365.855	1/2:17:0,10,7:0:0:10,7:356,243:-49.1197,-20.1003,-17.09,-29.37,0,-27.2628	1/1:39:0,39,0:0:0:39,0:1396,0:-125.862,-11.7402,0,-125.862,-11.7402,-125.862	1/1:36:0,36,0:0:0:36,0:1284,0:-115.862,-10.8371,0,-115.862,-10.8371,-115.862	1/2:9:0,1,8:0:0:1,8:36,282:-26.2511,-23.3128,-23.0118,-3.29724,0,-0.889005	1/1:109:0,109,0:0:0:109,0:3910,0:-352.019,-32.8123,0,-352.019,-32.8123,-352.019	1/1:79:0,79,0:0:0:79,0:2804,0:-252.589,-23.7814,0,-252.589,-23.7814,-252.589	1/1:61:0,61,0:0:0:61,0:2184,0:-196.826,-18.3628,0,-196.826,-18.3628,-196.826	1/2:143:0,68,75:0:0:68,75:2435,2655:-415.195,-216.618,-196.148,-198.933,0,-176.356	1/1:58:0,56,2:0:0:56,2:1985,72:-178.56,-16.8577,0,-172.685,-10.623,-172.083	1/2:67:0,32,35:0:0:32,35:1144,1247:-195.276,-101.997,-92.3641,-93.6357,0,-83.0996	2/2:5:0,0,5:0:0:0,5:0,177:-16.2764,-16.2764,-16.2764,-1.50515,-1.50515,0	1/2:101:0,48,53:0:0:48,53:1709,1868:-291.731,-152.441,-137.991,-139.644,0,-123.689	1/1:99:0,97,2:0:0:97,2:3473,72:-312.415,-29.1999,0,-306.54,-22.9652,-305.938	1/1:208:0,207,0:0:0:207,0:7389,0:-664.646,-62.3132,0,-664.646,-62.3132,-664.646	1/2:38:0,22,16:0:0:22,16:792,576:-111.982,-47.3585,-40.7358,-64.983,0,-60.1665	1/1:50:0,50,0:0:0:50,0:1796,0:-161.922,-15.0515,0,-161.922,-15.0515,-161.922	1/1:31:0,31,0:0:0:31,0:1108,0:-100.031,-9.33193,0,-100.031,-9.33193,-100.031	1/2:123:0,68,55:0:0:68,55:2440,1966:-359.681,-160.654,-140.184,-199.385,0,-182.828	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/2:44:0,18,26:0:0:18,26:648,927:-128.76,-75.8846,-70.466,-53.2333,0,-45.4066	1/1:51:0,51,0:0:0:51,0:1817,0:-163.808,-15.3525,0,-163.808,-15.3525,-163.808	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:43:0,27,16:0:0:27,16:953,569:-124.327,-46.7256,-38.5978,-77.9555,0,-73.139	1/2:50:0,13,37:0:0:13,37:468,1319:-146.061,-107.873,-103.96,-38.5463,0,-27.4081	1/1:138:0,138,0:0:0:138,0:4932,0:-444.018,-41.5421,0,-444.018,-41.5421,-444.018	1/1:87:0,87,0:0:0:87,0:3115,0:-280.571,-26.1896,0,-280.571,-26.1896,-280.571
chr09	23703639	.	AAC	AAT	42854.6	PASS	AB=0.487761;ABP=8.05991;AC=49;AF=0.260638;AN=188;AO=1908;CIGAR=2M1X;DP=9381;DPB=9381;DPRA=0.829169;EPP=11.0407;EPPR=184.967;GTI=4;LEN=1;MEANALT=1.23214;MQM=59.3962;MQMR=59.9121;NS=94;NUMALT=1;ODDS=0.230007;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67810;QR=259027;RO=7448;RPL=1889;RPP=3982.79;RPPR=15454.8;RPR=19;RUN=1;SAF=893;SAP=19.9496;SAR=1015;SRF=3245;SRP=270.585;SRR=4203;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1741:0:0:0,-15.0515,-156.971	0/1:82:39,43:39:1362:43:1528:-113.101,0,-98.191	0/1:170:99,71:99:3430:71:2529:-176.587,0,-257.735	0/0:249:248,0:248:8639:0:0:0,-74.6554,-777.238	0/1:27:15,12:15:528:12:423:-30.2595,0,-39.7233	0/1:35:17,18:17:598:18:632:-46.6707,0,-43.6122	0/1:95:58,35:58:2038:35:1244:-83.9421,0,-155.373	0/0:124:123,1:123:4316:1:36:0,-33.7294,-384.831	0/1:101:51,50:51:1803:50:1771:-129.268,0,-132.147	0/0:160:160,0:160:5621:0:0:0,-48.1648,-506.017	0/0:87:86,1:86:3014:1:36:0,-22.5913,-267.891	0/0:141:141,0:141:4924:0:0:0,-42.4452,-443.319	0/0:130:130,0:130:4535:0:0:0,-39.1339,-408.326	0/0:138:137,0:137:4795:0:0:0,-41.2411,-431.352	0/1:117:51,66:51:1783:66:2360:-177.428,0,-125.529	0/1:106:47,58:47:1622:58:2071:-154.776,0,-114.415	0/1:85:36,48:36:1248:48:1716:-129.054,0,-86.9753	0/1:58:29,29:29:995:29:1036:-76.0942,0,-72.3973	0/0:38:38,0:38:1301:0:0:0,-11.4391,-117.384	0/0:140:140,0:140:4855:0:0:0,-42.1442,-436.84	0/0:222:222,0:222:7707:0:0:0,-66.8287,-693.682	0/1:33:17,12:17:608:12:428:-29.7128,0,-45.968	0/1:67:30,37:30:1047:37:1316:-98.5666,0,-74.3697	0/0:40:39,0:39:1347:0:0:0,-11.7402,-121.166	0/0:40:39,0:39:1339:0:0:0,-11.7402,-120.591	0/0:215:215,0:215:7494:0:0:0,-64.7214,-674.482	0/1:204:94,110:94:3182:110:3921:-291.647,0,-225.192	0/1:59:38,21:38:1298:21:748:-49.8845,0,-99.3551	0/0:223:222,1:222:7652:1:36:0,-63.5314,-684.865	0/0:117:117,0:117:4084:0:0:0,-35.2205,-367.748	0/1:110:60,47:60:2061:47:1653:-116.405,0,-153.213	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:7:3,4:3:100:4:144:-11.1884,0,-7.22265	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.0781	0/0:14:14,0:14:478:0:0:0,-4.21442,-43.3447	0/1:261:128,132:128:4466:132:4718:-346.118,0,-323.48	0/0:68:68,0:68:2380:0:0:0,-20.47,-214.388	0/0:76:76,0:76:2625:0:0:0,-22.8783,-236.496	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:122:64,58:64:2231:58:2060:-148.91,0,-164.326	0/0:51:51,0:51:1792:0:0:0,-15.3525,-161.559	0/0:111:111,0:111:3864:0:0:0,-33.4143,-347.929	0/0:88:88,0:88:3043:0:0:0,-26.4906,-274.099	0/0:112:111,0:111:3835:0:0:0,-33.4143,-344.992	0/1:56:29,27:29:997:27:956:-69.4523,0,-73.1801	0/0:58:58,0:58:2056:0:0:0,-17.4597,-185.311	0/0:145:145,0:145:5108:0:0:0,-43.6493,-459.866	0/0:69:69,0:69:2406:0:0:0,-20.7711,-216.793	0/1:176:91,85:91:3171:85:3008:-217.91,0,-232.631	0/1:68:32,36:32:1093:36:1280:-95.0141,0,-78.1994	0/1:7:1,6:1:36:6:208:-16.9515,0,-1.49106	0/0:94:94,0:94:3275:0:0:0,-28.2968,-294.971	0/1:75:32,43:32:1136:43:1513:-113.86,0,-79.9715	0/1:14:9,5:9:320:5:176:-11.9706,0,-24.9281	0/0:142:142,0:142:4913:0:0:0,-42.7463,-442.313	0/1:45:28,17:28:961:17:594:-40.2391,0,-73.2499	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0758	0/1:14:2,12:2:72:12:419:-33.8247,0,-2.6223	0/1:85:43,41:43:1525:41:1443:-104.559,0,-111.97	0/0:120:118,1:118:4156:1:32:0,-32.9434,-371.028	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:212:115,97:115:4015:97:3464:-248.008,0,-297.721	0/0:139:138,1:138:4799:1:36:0,-38.2453,-428.475	0/1:83:57,26:57:1961:26:920:-58.1316,0,-151.775	0/1:80:47,33:47:1573:33:1156:-80.2217,0,-117.636	0/1:102:45,57:45:1569:57:2044:-153.426,0,-110.793	0/0:175:174,1:174:6043:1:36:0,-49.082,-540.382	0/0:58:58,0:58:2010:0:0:0,-17.4597,-181.171	0/1:54:28,26:28:962:26:928:-67.5817,0,-70.6288	0/0:87:86,0:86:2989:0:0:0,-25.8886,-269.024	0/1:33:15,18:15:506:18:628:-46.9089,0,-35.9255	0/0:69:69,0:69:2342:0:0:0,-20.7711,-211.035	0/1:152:97,55:97:3364:55:1960:-130.901,0,-257.22	0/0:147:147,0:147:5050:0:0:0,-44.2514,-454.644	0/0:194:193,0:193:6760:0:0:0,-58.0988,-608.159	0/1:72:41,31:41:1400:31:1108:-78.0388,0,-104.617	0/0:190:186,4:186:6508:4:144:0,-43.8821,-572.313	0/1:21:11,9:11:368:9:320:-22.8972,0,-27.201	0/0:137:136,1:136:4741:1:32:0,-38.0418,-423.652	0/0:124:124,0:124:4307:0:0:0,-37.3277,-387.812	0/0:217:217,0:217:7560:0:0:0,-65.3235,-680.453	0/1:76:33,43:33:1142:43:1514:-113.623,0,-80.2046	0/1:129:66,63:66:2321:63:2248:-163.678,0,-170.286	0/0:80:79,1:79:2741:1:36:0,-20.6279,-243.479	0/0:198:198,0:198:6904:0:0:0,-59.6039,-621.443	0/1:35:15,20:15:506:20:716:-54.2317,0,-35.3237	0/1:103:49,54:49:1737:54:1908:-140.432,0,-125.607	0/1:113:67,46:67:2298:46:1639:-113.782,0,-173.06	0/1:81:41,40:41:1431:40:1406:-102.418,0,-104.7	0/1:160:66,93:66:2288:93:3312:-250.045,0,-157.952	0/1:92:35,57:35:1191:57:2044:-156.526,0,-79.7916	0/0:213:211,0:211:7419:0:0:0,-63.5173,-667.239	0/0:196:196,0:196:6769:0:0:0,-59.0019,-609.291
chr09	23728432	.	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chr09	23744756	.	G	C	74490.2	PASS	AB=0.426919;ABP=91.2438;AC=134;AF=0.72043;AN=186;AO=3509;CIGAR=1X;DP=4924;DPB=4924;DPRA=1.2101;EPP=7622.71;EPPR=3066.96;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9802;NS=93;NUMALT=1;ODDS=2.52629;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125300;QR=49907;RO=1415;RPL=0;RPP=7622.71;RPPR=3075.64;RPR=3509;RUN=1;SAF=0;SAP=7622.71;SAR=3509;SRF=1;SRP=3066.96;SRR=1414;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:57:25,32:25:884:32:1140:-85.7505,0,-62.7197	0/1:46:35,11:35:1248:11:392:-21.7727,0,-98.7775	1/1:88:0,88:0:0:88:3144:-283.186,-26.4906,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:16:9,7:9:320:7:248:-17.8477,0,-24.3259	0/1:76:45,31:45:1563:31:1094:-75.89,0,-118.079	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:33:16,17:16:564:17:604:-44.7566,0,-41.1563	1/1:114:0,114:0:0:114:4060:-365.587,-34.3174,0	1/1:99:0,99:0:0:99:3548:-319.528,-29.802,0	1/1:78:0,78:0:0:78:2784:-250.801,-23.4803,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:107:1,106:1:36:106:3790:-337.699,-28.6119,0	0/1:61:32,29:32:1112:29:1032:-74.8306,0,-82.0212	0/1:77:38,39:38:1346:39:1396:-102.76,0,-98.2594	0/1:49:28,21:28:996:21:756:-53.6168,0,-75.2044	0/1:44:23,21:23:816:21:744:-54.039,0,-60.5164	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	1/1:69:0,69:0:0:69:2463:-221.924,-20.7711,0	1/1:104:0,104:0:0:104:3707:-333.833,-31.3071,0	0/0:19:18,1:18:622:1:36:0,-2.12129,-52.7038	0/1:32:19,13:19:649:13:464:-32.4645,0,-49.0949	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:28:0,28:0:0:28:995:-89.864,-8.42884,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:115:69,46:69:2447:46:1637:-112.998,0,-185.867	0/1:29:15,14:15:523:14:500:-36.6063,0,-38.6686	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:101:0,101:0:0:101:3608:-324.927,-30.404,0	0/1:31:21,10:21:733:10:347:-22.2317,0,-56.9577	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/0:100:99,1:99:3500:1:36:0,-26.5047,-311.611	1/1:37:0,37:0:0:37:1291:-116.49,-11.1381,0	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/1:3:2,1:2:63:1:36:-2.69518,0,-5.08006	0/1:52:39,13:39:1379:13:468:-26.8061,0,-108.754	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:58:0,58:0:0:58:2049:-184.68,-17.4597,0	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	0/0:26:26,0:26:898:0:0:0,-7.82678,-81.1323	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	0/1:104:69,35:69:2459:35:1239:-80.5065,0,-190.257	0/0:39:38,1:38:1346:1:36:0,-8.14189,-117.84	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/0:33:31,2:31:1091:2:68:0,-3.47628,-91.5499	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:50:0,50:0:0:50:1775:-160.032,-15.0515,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	.:.:.:.:.:.:.:.	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:74:25,49:25:879:49:1752:-135.688,0,-57.1506	1/1:115:0,115:0:0:115:4120:-370.984,-34.6185,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:97:97,0:97:3389:0:0:0,-29.1999,-305.227	1/1:61:3,58:3:104:58:2058:-175.787,-8.66002,0	0/1:66:28,38:28:980:38:1364:-103.193,0,-68.6449	0/1:24:17,7:17:586:7:248:-15.4395,0,-45.838	0/1:98:53,45:53:1900:45:1599:-114.699,0,-141.777	1/1:87:1,86:1:36:86:3080:-273.83,-22.5913,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	0/1:34:23,11:23:816:11:396:-25.7477,0,-63.5267	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:54:30,24:30:1050:24:855:-61.0146,0,-78.5532	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:87:55,32:55:1960:32:1136:-76.3593,0,-150.486	1/1:96:0,96:0:0:96:3427:-308.644,-28.8989,0	1/1:94:1,93:1:36:93:3335:-296.769,-24.6985,0	0/1:15:9,6:9:316:6:216:-15.2751,0,-24.2634	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	0/1:18:14,4:14:496:4:140:-7.52604,0,-39.5557	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:64:30,34:30:1052:34:1220:-90.8409,0,-75.7218	0/1:83:43,40:43:1519:40:1436:-104.552,0,-112.017	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:124:1,123:1:36:123:4403:-392.844,-33.7294,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:45:24,21:24:848:21:756:-54.8209,0,-63.0933	0/1:66:33,33:33:1176:33:1176:-86.2798,0,-86.2798	0/1:75:55,20:55:1928:20:716:-42.1905,0,-151.217	0/1:151:86,65:86:3029:65:2336:-165.044,0,-227.386	0/1:70:52,18:52:1848:18:648:-37.5798,0,-145.528	1/1:72:0,72:0:0:72:2547:-229.479,-21.6742,0	1/1:96:0,96:0:0:96:3427:-308.644,-28.8989,0
chr09	23744758	.	A	G	24437.6	PASS	AB=0.5761;ABP=127.608;AC=45;AF=0.239362;AN=188;AO=1433;CIGAR=1X;DP=5435;DPB=5435;DPRA=1.01926;EPP=3114.73;EPPR=8693.24;GTI=0;LEN=1;MEANALT=1;MQM=59.9805;MQMR=60;NS=94;NUMALT=1;ODDS=0.0116391;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50609;QR=140819;RO=4002;RPL=0;RPP=3114.73;RPPR=8693.24;RPR=1433;RUN=1;SAF=0;SAP=3114.73;SAR=1433;SRF=0;SRP=8693.24;SRR=4002;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:483:0:0:0,-4.21442,-43.7973	0/1:54:30,24:30:1054:24:844:-60.0233,0,-78.9136	0/1:47:11,36:11:392:36:1267:-100.184,0,-21.4716	0/0:86:86,0:86:3041:0:0:0,-25.8886,-273.921	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/1:79:31,48:31:1065:48:1667:-126.532,0,-72.3738	0/0:24:24,0:24:843:0:0:0,-7.22472,-76.188	0/1:34:17,17:17:579:17:591:-43.2802,0,-42.1932	0/0:119:119,0:119:4208:0:0:0,-35.8226,-378.903	0/0:97:97,0:97:3438:0:0:0,-29.1999,-309.635	0/0:78:78,0:78:2743:0:0:0,-23.4803,-247.112	0/0:69:69,0:69:2384:0:0:0,-20.7711,-214.816	0/0:105:104,1:104:3672:1:32:0,-28.4088,-327.486	0/1:61:28,33:28:979:33:1166:-86.8844,0,-70.0592	0/1:77:39,38:39:1387:38:1356:-99.1612,0,-101.949	0/1:51:22,29:22:779:29:1028:-77.4805,0,-55.0795	0/1:44:20,24:20:695:24:856:-64.1158,0,-49.6261	0/0:41:41,0:41:1439:0:0:0,-12.3422,-129.805	0/0:70:70,0:70:2455:0:0:0,-21.0721,-221.206	0/0:102:102,0:102:3598:0:0:0,-30.7051,-324.03	0/1:25:8,17:8:273:17:604:-47.1649,0,-17.3744	0/1:31:13,18:13:464:18:640:-48.5968,0,-32.7656	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/0:29:29,0:29:1006:0:0:0,-8.72987,-90.8491	0/0:114:114,0:114:4047:0:0:0,-34.3174,-364.42	0/1:115:47,68:47:1655:68:2388:-180.558,0,-114.618	0/1:29:14,15:14:495:15:528:-39.1215,0,-36.1532	0/0:95:95,0:95:3354:0:0:0,-28.5978,-302.079	0/0:101:101,0:101:3578:0:0:0,-30.404,-322.229	0/1:29:9,20:9:311:20:712:-55.6768,0,-19.5939	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:12:6,6:6:207:6:216:-16.1782,0,-15.3545	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3237	0/1:171:73,98:73:2598:98:3503:-264.004,0,-182.592	0/0:36:36,0:36:1263:0:0:0,-10.8371,-113.972	0/0:51:51,0:51:1759:0:0:0,-15.3525,-158.59	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:51:12,39:12:428:39:1396:-110.587,0,-23.5063	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:58:58,0:58:2058:0:0:0,-17.4597,-185.49	0/0:81:81,0:81:2859:0:0:0,-24.3834,-257.547	0/0:52:52,0:52:1821:0:0:0,-15.6536,-164.166	0/1:47:21,26:21:739:26:924:-69.3292,0,-52.684	0/0:31:31,0:31:1068:0:0:0,-9.33193,-96.4245	0/0:70:70,0:70:2458:0:0:0,-21.0721,-221.475	0/0:48:48,0:48:1679:0:0:0,-14.4494,-151.396	0/1:103:35,68:35:1215:68:2428:-187.77,0,-78.6436	0/1:72:34,38:34:1174:38:1343:-99.4952,0,-84.2884	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6397	0/1:72:41,31:41:1455:31:1094:-76.9867,0,-109.571	0/1:8:2,6:2:72:6:207:-16.5587,0,-4.42848	0/0:52:52,0:52:1819:0:0:0,-15.6536,-163.988	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/1:23:14,9:14:500:9:320:-22.2187,0,-38.4125	0/1:76:48,28:48:1681:28:991:-66.6252,0,-128.696	0/0:115:115,0:115:4061:0:0:0,-34.6184,-365.678	0/1:8:4,4:4:144:4:136:-10.1673,0,-10.9054	0/1:150:53,97:53:1851:97:3398:-260.883,0,-121.712	0/0:61:58,3:58:2001:3:104:0,-8.66002,-170.657	0/1:66:37,29:37:1316:29:1006:-70.9811,0,-98.8738	0/1:23:8,15:8:276:15:497:-38.122,0,-18.2516	0/1:101:46,55:46:1644:55:1938:-144.292,0,-117.845	0/0:90:89,1:89:3124:1:36:0,-23.4944,-277.79	0/0:74:74,0:74:2621:0:0:0,-22.2762,-236.137	0/1:34:11,23:11:396:23:808:-62.8051,0,-25.7477	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:52:22,30:22:779:30:1059:-79.9669,0,-54.7785	0/0:51:51,0:51:1804:0:0:0,-15.3525,-162.642	0/1:95:33,62:33:1144:62:2167:-166.697,0,-74.6647	0/0:95:95,0:95:3314:0:0:0,-28.5978,-298.482	0/0:97:97,0:97:3439:0:0:0,-29.1999,-309.725	0/1:15:6,9:6:216:9:307:-23.4448,0,-15.2751	0/0:101:101,0:101:3524:0:0:0,-30.404,-317.37	0/1:17:4,13:4:144:13:455:-36.1644,0,-8.19611	0/0:36:36,0:36:1263:0:0:0,-10.8371,-113.972	0/0:26:26,0:26:897:0:0:0,-7.82678,-81.0416	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.55	0/1:64:34,30:34:1208:30:1063:-76.7149,0,-89.7602	0/1:86:41,45:41:1439:45:1579:-116.511,0,-103.916	0/0:66:66,0:66:2329:0:0:0,-19.868,-209.869	0/0:126:125,1:125:4412:1:36:0,-34.3315,-393.656	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/1:46:21,25:21:729:25:887:-66.3007,0,-52.0813	0/1:65:31,34:31:1082:34:1220:-90.5399,0,-78.1203	0/1:75:19,56:19:672:56:1986:-156.436,0,-38.2296	0/1:155:67,88:67:2361:88:3098:-232.388,0,-166.088	0/1:71:18,53:18:640:53:1904:-150.265,0,-36.5562	0/0:73:73,0:73:2562:0:0:0,-21.9752,-230.831	0/0:96:96,0:96:3357:0:0:0,-28.8989,-302.349
chr09	23745668	.	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chr09	23877896	.	G	A	20518.6	PASS	AB=0.515959;ABP=9.73336;AC=44;AF=0.23913;AN=184;AO=1578;CIGAR=1X;DP=6697;DPB=6697;DPRA=1.06591;EPP=3300.54;EPPR=11114.4;GTI=1;LEN=1;MEANALT=1.02128;MQM=33.6882;MQMR=47.8741;NS=92;NUMALT=1;ODDS=3.57488;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55230;QR=181017;RO=5117;RPL=1563;RPP=3300.54;RPPR=11114.4;RPR=15;RUN=1;SAF=1578;SAP=3429.59;SAR=0;SRF=5117;SRP=11114.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:58:58,0:58:2043:0:0:0,-17.4597,-183.631	0/1:66:39,27:39:1381:27:930:-56.889,0,-104.065	0/1:161:80,81:80:2829:81:2830:-181.254,0,-204.048	0/0:112:112,0:112:3970:0:0:0,-33.7154,-351.82	0/1:64:32,32:32:1132:32:1116:-71.7861,0,-81.8839	0/1:72:29,43:29:1028:43:1519:-103.71,0,-70.9414	0/1:142:80,62:80:2855:62:2158:-126.049,0,-209.554	0/0:119:119,0:119:4190:0:0:0,-35.8226,-375.798	0/1:87:43,44:43:1523:44:1548:-97.7213,0,-110.843	0/0:67:67,0:67:2369:0:0:0,-20.169,-210.301	0/0:26:26,0:26:889:0:0:0,-7.82678,-79.3999	0/0:56:56,0:56:1967:0:0:0,-16.8577,-176.748	0/0:29:29,0:29:1018:0:0:0,-8.72987,-91.7119	0/0:43:43,0:43:1507:0:0:0,-12.9443,-135.277	0/1:44:25,18:25:873:18:635:-36.1752,0,-64.4146	0/1:22:8,14:8:280:14:480:-32.6896,0,-18.8605	0/1:51:18,33:18:631:33:1160:-79.1604,0,-41.0963	0/1:22:13,9:13:460:9:324:-19.1145,0,-35.0046	0/0:24:24,0:24:832:0:0:0,-7.22472,-74.8198	0/0:144:144,0:144:5095:0:0:0,-43.3483,-450.744	0/0:104:104,0:104:3680:0:0:0,-31.3071,-330.091	0/1:139:43,96:43:1528:96:3397:-223.683,0,-93.7605	0/1:39:20,19:20:694:19:665:-39.2426,0,-49.6756	0/0:130:130,0:130:4603:0:0:0,-39.1339,-412.343	0/0:95:95,0:95:3373:0:0:0,-28.5978,-302.542	0/0:201:201,0:201:7087:0:0:0,-60.507,-623.449	0/1:189:108,81:108:3849:81:2783:-166.326,0,-288.424	0/1:17:10,7:10:356:7:252:-14.5977,0,-26.7522	0/0:216:215,0:215:7619:0:0:0,-64.7214,-672.421	0/0:95:95,0:95:3351:0:0:0,-28.5978,-300.775	0/1:78:37,41:37:1328:41:1430:-88.8205,0,-93.2089	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/1:13:6,7:6:216:7:244:-13.4438,0,-15.8274	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9064	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5105	0/1:160:74,86:74:2606:86:3006:-188.015,0,-181.483	0/0:140:140,0:140:4982:0:0:0,-42.1442,-446.999	0/0:36:36,0:36:1267:0:0:0,-10.8371,-114.069	.:.:.:.:.:.:.:.	0/1:101:48,53:48:1699:53:1835:-119.451,0,-121.983	0/0:22:22,0:22:776:0:0:0,-6.62266,-69.7647	0/0:100:100,0:100:3558:0:0:0,-30.103,-318.908	0/0:50:50,0:50:1744:0:0:0,-15.0515,-154.938	0/0:35:35,0:35:1244:0:0:0,-10.536,-109.411	0/1:130:61,69:61:2124:69:2409:-148.521,0,-148.971	0/0:71:71,0:71:2519:0:0:0,-21.3731,-224.363	0/0:130:128,2:128:4534:2:72:0,-33.199,-393.479	0/0:90:90,0:90:3208:0:0:0,-27.0927,-282.978	0/1:67:31,36:31:1116:36:1268:-80.0754,0,-79.2298	0/1:187:106,81:106:3766:81:2857:-165.637,0,-276.286	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.3724	0/0:148:148,0:148:5275:0:0:0,-44.5524,-473.192	0/1:44:25,19:25:884:19:665:-39.3701,0,-64.2711	0/1:8:4,4:4:144:4:140:-9.39673,0,-10.8719	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.315	0/1:53:18,35:18:633:35:1225:-78.9532,0,-40.6042	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.71863	0/1:11:4,7:4:140:7:244:-16.3555,0,-9.43685	0/1:70:31,39:31:1104:39:1362:-89.7931,0,-78.1404	0/0:94:94,0:94:3277:0:0:0,-28.2968,-290.794	.:.:.:.:.:.:.:.	0/1:138:75,63:75:2653:63:2210:-132.02,0,-192.68	0/0:162:161,1:161:5733:1:36:0,-45.6432,-505.131	0/1:50:22,28:22:788:28:988:-62.5221,0,-56.0182	0/1:43:26,17:26:928:17:604:-34.8383,0,-69.7774	0/1:121:52,69:52:1848:69:2401:-152.352,0,-128.037	0/0:62:62,0:62:2201:0:0:0,-18.6639,-195.636	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.8801	0/1:72:25,47:25:888:47:1625:-110.743,0,-58.0951	0/0:64:64,0:64:2234:0:0:0,-19.2659,-197.954	0/1:10:1,9:1:36:9:301:-21.4352,0,-0.538215	0/0:151:150,1:150:5318:1:36:0,-42.2094,-473.523	0/1:49:23,26:23:815:26:898:-58.1555,0,-58.0607	0/0:124:124,0:124:4413:0:0:0,-37.3277,-396.008	0/0:88:88,0:88:3156:0:0:0,-26.4906,-280.467	0/1:141:72,69:72:2564:69:2440:-154.84,0,-187.686	0/0:42:40,2:40:1436:2:72:0,-6.47556,-122.611	1/1:4:0,4:0:0:4:144:-12.0108,-1.20412,0	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.213	0/0:45:45,0:45:1556:0:0:0,-13.5463,-139.974	0/0:138:138,0:138:4911:0:0:0,-41.5421,-434.645	0/1:75:32,43:32:1097:43:1511:-95.5125,0,-74.663	0/1:32:19,13:19:659:13:468:-27.226,0,-49.2884	0/0:52:52,0:52:1829:0:0:0,-15.6536,-162.793	0/0:65:65,0:65:2283:0:0:0,-19.5669,-202.222	0/1:25:12,13:12:416:13:464:-30.577,0,-30.1689	0/1:53:22,31:22:728:31:1072:-71.8977,0,-49.7426	0/1:53:26,27:26:908:27:947:-61.022,0,-65.8978	0/1:28:17,11:17:595:11:379:-23.0737,0,-45.3255	0/1:80:47,33:47:1623:33:1160:-70.3732,0,-121.893	0/1:32:6,26:6:216:26:920:-61.7706,0,-9.88387	0/0:52:52,0:52:1860:0:0:0,-15.6536,-164.695	0/0:41:41,0:41:1439:0:0:0,-12.3422,-128.188
chr09	23888545	.	C	T	11424.5	PASS	AB=0.491859;ABP=3.85885;AC=49;AF=0.260638;AN=188;AO=733;CIGAR=1X;DP=3557;DPB=3557;DPRA=0.772672;EPP=1594.7;EPPR=6126.56;GTI=3;LEN=1;MEANALT=1.04;MQM=60;MQMR=59.9855;NS=94;NUMALT=1;ODDS=0.699285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25766;QR=98505;RO=2820;RPL=733;RPP=1594.7;RPPR=6126.56;RPR=0;RUN=1;SAF=733;SAP=1594.7;SAR=0;SRF=2820;SRP=6126.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978	0/1:44:14,30:14:492:30:1067:-83.0959,0,-31.367	0/1:43:18,25:18:615:25:896:-68.0161,0,-42.7235	0/0:50:49,1:49:1731:1:36:0,-11.4532,-152.476	0/1:32:20,12:20:716:12:424:-28.8635,0,-55.1348	0/1:26:9,17:9:316:17:608:-47.2252,0,-20.9521	0/1:44:20,23:20:708:23:820:-60.8568,0,-50.7798	0/0:70:70,0:70:2435:0:0:0,-21.0721,-219.403	0/1:24:17,7:17:612:7:252:-15.8042,0,-48.1887	0/0:37:37,0:37:1294:0:0:0,-11.1381,-116.757	0/0:69:69,0:69:2435:0:0:0,-20.7711,-219.406	0/0:47:47,0:47:1660:0:0:0,-14.1484,-149.688	0/0:35:35,0:35:1210:0:0:0,-10.536,-109.201	0/0:55:55,0:55:1927:0:0:0,-16.5566,-173.706	0/1:22:14,8:14:481:8:280:-18.9166,0,-36.9924	0/1:43:23,20:23:771:20:692:-49.6565,0,-56.7547	0/1:29:9,20:9:311:20:708:-55.3157,0,-19.5939	0/1:28:16,11:16:563:11:387:-26.679,0,-42.512	0/0:36:36,0:36:1234:0:0:0,-10.8371,-111.357	0/0:55:55,0:55:1943:0:0:0,-16.5566,-175.146	0/0:48:48,0:48:1660:0:0:0,-14.4494,-149.682	0/1:37:21,16:21:744:16:547:-38.4148,0,-56.1462	0/1:5:1,4:1:36:4:129:-10.4225,0,-2.09312	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:21:21,0:21:734:0:0:0,-6.32163,-66.3804	0/0:78:78,0:78:2743:0:0:0,-23.4803,-247.105	0/1:75:41,34:41:1420:34:1199:-85.6375,0,-105.513	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/0:101:101,0:101:3566:0:0:0,-30.404,-321.148	0/0:38:38,0:38:1338:0:0:0,-11.4391,-120.718	0/1:40:21,19:21:740:19:655:-47.2277,0,-54.8822	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:6:6,0:6:193:0:0:0,-1.80618,-17.6856	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:86:47,39:47:1624:39:1329:-94.014,0,-120.557	0/0:42:42,0:42:1466:0:0:0,-12.6433,-132.233	0/0:61:61,0:61:2134:0:0:0,-18.3628,-192.328	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:48:23,25:23:787:25:876:-64.7076,0,-56.6924	0/0:22:22,0:22:757:0:0:0,-6.62266,-68.4457	0/0:68:68,0:68:2404:0:0:0,-20.47,-216.615	0/0:32:32,0:32:1104:0:0:0,-9.63296,-99.6627	0/0:24:24,0:24:826:0:0:0,-7.22472,-74.6542	0/1:20:12,8:12:423:8:284:-19.8828,0,-32.3845	0/0:24:24,0:24:844:0:0:0,-7.22472,-76.2789	0/0:61:61,0:61:2159:0:0:0,-18.3628,-194.577	0/0:55:55,0:55:1897:0:0:0,-16.5566,-171.004	0/1:54:27,27:27:952:27:968:-71.1817,0,-69.7396	0/1:72:27,45:27:941:45:1571:-120.001,0,-63.3273	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:48:47,0:47:1638:0:0:0,-14.1484,-147.347	0/1:18:6,12:6:193:12:432:-33.8027,0,-12.2671	0/1:10:5,5:5:180:5:167:-12.3481,0,-13.5418	0/0:44:44,0:44:1558:0:0:0,-13.2453,-140.51	0/1:17:8,9:8:288:9:305:-22.6597,0,-21.1499	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:52:26,26:26:902:26:911:-66.6514,0,-65.8368	0/0:89:89,0:89:3081:0:0:0,-26.7917,-277.519	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:41:28,13:28:960:13:416:-25.4041,0,-74.3655	0/0:69:68,1:68:2394:1:36:0,-17.1728,-212.119	0/1:34:20,14:20:716:14:495:-34.648,0,-54.5327	0/1:24:13,11:13:447:11:396:-28.758,0,-33.333	0/1:26:8,18:8:284:18:644:-50.4638,0,-18.0766	0/0:63:63,0:63:2193:0:0:0,-18.9649,-197.633	0/0:33:33,0:33:1126:0:0:0,-9.93399,-101.64	0/1:27:16,11:16:563:11:392:-27.4922,0,-42.8714	0/0:51:51,0:51:1775:0:0:0,-15.3525,-160.029	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:67:67,0:67:2365:0:0:0,-20.169,-213.108	0/1:22:17,5:17:612:5:180:-9.9294,0,-48.7908	0/0:75:75,0:75:2605:0:0:0,-22.5772,-234.698	0/0:44:44,0:44:1541:0:0:0,-13.2453,-138.98	0/1:46:23,23:23:815:23:792:-57.7471,0,-59.8234	0/0:45:45,0:45:1575:0:0:0,-13.5463,-142.04	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:39:39,0:39:1352:0:0:0,-11.7402,-121.975	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/0:60:59,0:59:2032:0:0:0,-17.7608,-182.789	0/1:50:29,21:29:1000:21:747:-52.5028,0,-75.2557	0/1:18:10,8:10:352:8:284:-20.4848,0,-26.5997	0/0:30:30,0:30:1038:0:0:0,-9.0309,-93.7276	0/0:65:64,1:64:2231:1:36:0,-15.9687,-197.454	0/1:16:8,8:8:275:8:284:-21.0869,0,-20.267	0/1:37:24,13:24:844:13:460:-30.5973,0,-65.1408	0/1:36:14,22:14:504:22:775:-59.2341,0,-34.861	0/1:52:26,26:26:877:26:920:-67.4635,0,-63.5823	0/1:112:56,56:56:1913:56:1970:-143.857,0,-138.671	0/1:24:11,13:11:374:13:460:-34.5107,0,-26.7617	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:29:29,0:29:1008:0:0:0,-8.72987,-91.0281
chr09	23895537	.	A	G	313404	PASS	AB=0.480913;ABP=25.0603;AC=141;AF=0.75;AN=188;AO=12413;CIGAR=1X;DP=16052;DPB=16052;DPRA=0;EPP=26957.5;EPPR=7896.31;GTI=0;LEN=1;MEANALT=1.04255;MQM=58.7068;MQMR=59.1593;NS=94;NUMALT=1;ODDS=3.52249;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=443170;QR=129292;RO=3635;RPL=10271;RPP=11562.8;RPPR=2116.63;RPR=2142;RUN=1;SAF=10271;SAP=11562.8;SAR=2142;SRF=2758;SRP=2116.63;SRR=877;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1644:-148.239,-13.8474,0	0/1:257:121,136:121:4297:136:4823:-356.857,0,-309.541	0/1:167:103,64:103:3625:64:2282:-155.344,0,-276.184	1/1:275:0,275:0:0:275:9855:-884.763,-82.7833,0	0/1:129:61,68:61:2150:68:2428:-179.943,0,-154.861	0/1:84:45,39:45:1585:39:1381:-99.2984,0,-117.65	0/1:221:107,114:107:3798:114:4079:-300.371,0,-275.108	1/1:226:1,225:1:36:225:8046:-719.85,-64.4345,0	0/1:42:24,18:24:860:18:640:-45.2848,0,-65.0786	1/1:88:0,88:0:0:88:3143:-283.093,-26.4906,0	1/1:113:0,113:0:0:113:4025:-361.637,-34.0164,0	1/1:80:0,80:0:0:80:2849:-256.645,-24.0824,0	1/1:75:0,75:0:0:75:2676:-241.072,-22.5773,0	1/1:125:0,125:0:0:125:4459:-401.407,-37.6288,0	0/1:73:35,38:35:1241:38:1368:-100.742,0,-90.0173	0/1:64:29,35:29:1028:35:1256:-94.0794,0,-73.5671	0/1:86:40,46:40:1440:46:1647:-122.595,0,-104.009	0/1:88:41,47:41:1445:47:1692:-126.069,0,-103.853	1/1:64:0,64:0:0:64:2292:-206.534,-19.2659,0	1/1:450:2,448:2:72:448:16047:-1434.55,-128.627,0	1/1:161:0,161:0:0:161:5788:-518.919,-48.4658,0	0/1:500:345,155:345:12283:155:5536:-346.21,0,-953.785	0/1:34:19,15:19:680:15:536:-37.6328,0,-50.4348	1/1:197:0,197:0:0:197:7032:-630.135,-59.3029,0	1/1:113:0,113:0:0:113:3983:-355.856,-34.0164,0	1/1:978:1,977:1:36:977:34864:-3125.65,-290.809,0	0/1:321:164,157:164:5853:157:5599:-406.648,0,-429.762	0/1:37:16,21:16:553:21:744:-55.443,0,-38.9559	1/1:1197:1,1196:1:36:1196:42650:-3826.03,-356.797,0	1/1:241:0,241:0:0:241:8628:-776.459,-72.5482,0	0/1:80:46,34:46:1652:34:1224:-86.3846,0,-124.458	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:30:17,13:17:608:13:468:-33.4287,0,-46.0211	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:421:194,227:194:6944:227:8078:-598.054,0,-497.776	1/1:407:0,407:0:0:407:14545:-1308.02,-122.519,0	1/1:88:0,88:0:0:88:3136:-282.457,-26.4906,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:252:152,100:152:5392:100:3570:-244.938,0,-409.054	1/1:45:0,45:0:0:45:1612:-145.359,-13.5464,0	1/1:172:0,172:0:0:172:6118:-549.192,-51.7772,0	1/1:67:0,67:0:0:67:2389:-215.261,-20.169,0	1/1:78:0,78:0:0:78:2780:-248.87,-23.4803,0	0/1:336:160,176:160:5716:176:6280:-462.335,0,-411.999	1/1:191:0,191:0:0:191:6817:-613.438,-57.4967,0	1/1:177:0,177:0:0:177:6323:-565.28,-53.2823,0	1/1:176:1,175:1:36:175:6265:-560.298,-49.383,0	0/1:249:103,146:103:3631:146:5241:-396.858,0,-251.338	0/1:681:372,309:372:13293:309:11007:-784.384,0,-988.955	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:221:0,221:0:0:221:7904:-711.267,-66.5276,0	0/1:187:93,94:93:3276:94:3371:-246.826,0,-238.67	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.0422	1/1:215:0,215:0:0:215:7628:-686.461,-64.7215,0	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.2617	1/1:33:0,33:0:0:33:1164:-104.981,-9.93399,0	0/1:79:42,36:42:1493:36:1292:-92.453,0,-110.327	0/1:133:58,75:58:2022:75:2684:-201.76,0,-141.653	1/1:202:2,200:2:68:200:7152:-637.233,-54.3504,0	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	0/1:621:302,318:302:10769:318:11360:-833.878,0,-781.235	1/1:332:6,326:6:216:326:11640:-1025.51,-80.1514,0	0/1:145:68,77:68:2424:77:2760:-204.99,0,-174.277	0/1:143:81,62:81:2888:62:2189:-153.073,0,-217.107	0/1:138:71,67:71:2520:67:2384:-173.254,0,-185.503	1/1:191:0,191:0:0:191:6811:-613.019,-57.4967,0	1/1:51:0,51:0:0:51:1815:-163.624,-15.3525,0	0/1:131:69,62:69:2434:62:2220:-160.628,0,-179.877	1/1:184:0,184:0:0:184:6573:-591.118,-55.3895,0	0/1:36:14,22:14:489:22:788:-60.4077,0,-33.5018	1/1:198:2,195:2:72:195:6964:-619.882,-52.826,0	0/1:76:37,39:37:1320:39:1396:-103.059,0,-96.2237	1/1:102:0,102:0:0:102:3651:-328.56,-30.7051,0	1/1:220:1,218:1:36:218:7784:-695.577,-62.6871,0	0/1:267:154,113:154:5482:113:4014:-281.045,0,-413.132	1/1:177:1,176:1:36:176:6316:-564.92,-49.684,0	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	1/1:112:1,111:1:32:111:3968:-354.11,-30.516,0	1/1:174:0,174:0:0:174:6200:-558.079,-52.3792,0	1/1:369:0,369:0:0:369:13124:-1175.06,-111.08,0	0/1:136:68,68:68:2404:68:2448:-177.53,0,-175.675	0/1:79:36,43:36:1288:43:1539:-114.316,0,-91.5852	1/1:84:1,83:1:36:83:2932:-260.516,-21.6882,0	1/1:148:0,148:0:0:148:5293:-475.097,-44.5524,0	0/1:44:18,26:18:644:26:936:-71.3141,0,-45.0453	0/1:97:44,53:44:1580:53:1888:-140.996,0,-113.292	0/1:100:51,49:51:1816:49:1732:-126.057,0,-133.618	0/1:57:31,26:31:1112:26:932:-67.0355,0,-83.2311	0/1:169:82,87:82:2928:87:3115:-229.691,0,-211.156	0/1:92:50,42:50:1753:42:1504:-107.957,0,-130.357	1/1:116:0,116:0:0:116:4159:-372.235,-34.9195,0	1/1:98:0,98:0:0:98:3503:-315.464,-29.5009,0
chr09	23895560	.	G	A	61873	PASS	AB=0.523487;ABP=36.2632;AC=47;AF=0.25;AN=188;AO=3649;CIGAR=1X;DP=16712;DPB=16712;DPRA=0.966361;EPP=7926.71;EPPR=28351.6;GTI=2;LEN=1;MEANALT=1.01724;MQM=55.2568;MQMR=54.5265;NS=94;NUMALT=1;ODDS=2.24467;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130281;QR=464722;RO=13059;RPL=0;RPP=7926.71;RPPR=28351.6;RPR=3649;RUN=1;SAF=0;SAP=7926.71;SAR=3649;SRF=0;SRP=28360.3;SRR=13059;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1670:0:0:0,-14.1484,-150.503	0/1:258:118,140:118:4214:140:4995:-370.666,0,-301.184	0/1:325:143,182:143:5092:182:6494:-483.822,0,-357.163	0/0:448:448,0:448:15976:0:0:0,-134.861,-1431.03	0/1:160:82,78:82:2921:78:2795:-202.616,0,-212.28	0/1:48:22,26:22:784:26:924:-68.9865,0,-56.3186	0/1:334:160,174:160:5672:174:6186:-455.117,0,-406.002	0/0:306:305,1:305:10880:1:36:0,-88.5186,-973.495	0/1:179:76,103:76:2702:103:3655:-274.728,0,-189.333	0/0:204:204,0:204:7256:0:0:0,-61.4101,-650.766	0/0:63:62,0:62:2201:0:0:0,-18.6639,-196.825	0/0:76:75,1:75:2647:1:36:0,-19.3756,-234.762	0/0:68:68,0:68:2427:0:0:0,-20.47,-216.507	0/0:62:62,0:62:2177:0:0:0,-18.6639,-195.615	0/1:66:35,31:35:1256:31:1108:-79.9955,0,-92.5233	0/1:60:29,31:29:1040:31:1116:-82.4255,0,-75.4627	0/1:77:38,39:38:1360:39:1404:-101.914,0,-99.3498	0/1:53:24,29:24:843:29:1027:-76.7351,0,-59.7674	0/0:42:42,0:42:1512:0:0:0,-12.6433,-135.591	0/0:549:549,0:549:19589:0:0:0,-165.265,-1756.52	0/0:330:330,0:330:11617:0:0:0,-99.3399,-1039.89	0/1:305:95,210:95:3370:210:7496:-581.708,0,-210.397	0/1:172:92,80:92:3268:80:2876:-206.17,0,-240.534	0/0:216:215,1:215:7679:1:36:0,-61.4293,-681.484	0/0:165:165,0:165:5883:0:0:0,-49.6699,-526.072	0/0:624:624,0:624:22212:0:0:0,-187.843,-1990.63	0/1:404:221,183:221:7771:183:6576:-468.805,0,-573.393	0/1:27:14,13:14:504:13:464:-33.7685,0,-36.7422	0/0:696:694,1:694:24679:1:36:0,-206.031,-2209.35	0/0:245:244,1:244:8702:1:36:0,-70.1592,-777.136	0/1:362:189,173:189:6762:173:6169:-444.101,0,-498.557	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.5741	0/1:22:8,14:8:288:14:504:-39.0106,0,-19.2279	0/1:10:5,5:5:165:5:165:-12.157,0,-12.157	0/0:17:17,0:17:612:0:0:0,-5.11751,-54.5996	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0809	0/1:193:104,89:104:3695:89:3192:-228.875,0,-272.396	0/0:346:344,2:344:12273:2:72:0,-97.5012,-1092.78	0/0:58:58,0:58:2052:0:0:0,-17.4597,-183.173	0/1:7:5,2:5:180:2:72:-4.71982,0,-14.3	0/1:399:151,248:151:5388:248:8832:-671.667,0,-363.134	0/0:43:43,0:43:1521:0:0:0,-12.9443,-135.729	0/0:281:281,0:281:10033:0:0:0,-84.5894,-897.67	0/0:81:81,0:81:2856:0:0:0,-24.3834,-256.48	0/0:52:52,0:52:1845:0:0:0,-15.6536,-164.406	0/1:261:135,126:135:4789:126:4448:-320.65,0,-350.639	0/0:231:230,1:230:8103:1:36:0,-65.9414,-720.974	0/0:412:411,1:411:14646:1:36:0,-120.429,-1306.33	0/0:220:220,0:220:7837:0:0:0,-66.2266,-703.545	0/1:273:140,133:140:4992:133:4771:-345.613,0,-364.99	0/1:396:180,216:180:6432:216:7764:-578.685,0,-458.538	0/1:15:8,7:8:288:7:252:-18.3269,0,-21.7307	0/0:259:259,0:259:9224:0:0:0,-77.9668,-826.774	0/1:84:41,43:41:1472:43:1519:-111.673,0,-106.994	0/1:37:15,22:15:540:22:792:-60.4317,0,-37.7752	0/0:236:236,0:236:8344:0:0:0,-71.0431,-745.919	0/1:69:25,44:25:896:44:1584:-121.614,0,-59.1472	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.4119	0/1:44:21,23:21:748:23:828:-61.2589,0,-54.1173	0/1:124:56,68:56:1991:68:2438:-179.745,0,-141.507	0/0:126:126,0:126:4490:0:0:0,-37.9298,-403.036	0/1:22:5,17:5:176:17:593:-47.0335,0,-9.55185	0/1:362:185,177:185:6605:177:6335:-460.39,0,-484.161	0/0:343:339,4:339:12132:4:144:0,-89.9493,-1074.2	0/1:95:49,46:49:1764:46:1648:-119.195,0,-130.199	0/1:209:119,90:119:4259:90:3217:-226.216,0,-318.628	0/1:354:147,207:147:5250:207:7353:-553.921,0,-364.975	0/0:125:124,1:124:4428:1:36:0,-34.0331,-394.372	0/0:19:19,0:19:666:0:0:0,-5.71957,-60.1839	0/1:90:45,45:45:1607:45:1616:-118.23,0,-117.577	0/0:85:85,0:85:3039:0:0:0,-25.5875,-273.149	0/1:33:13,20:13:468:20:716:-54.5998,0,-32.4084	0/0:210:210,0:210:7475:0:0:0,-63.2163,-669.333	0/1:118:59,59:59:2120:59:2110:-153.519,0,-155.087	0/0:369:369,0:369:13129:0:0:0,-111.08,-1177.62	0/0:353:353,0:353:12556:0:0:0,-106.264,-1125.97	0/1:365:179,186:179:6354:186:6656:-486.689,0,-460.719	0/0:222:222,0:222:7902:0:0:0,-66.8287,-709.116	0/1:22:17,5:17:595:5:177:-9.60134,0,-47.2309	0/0:240:238,2:238:8460:2:72:0,-65.4202,-752.767	0/0:262:260,0:260:9244:0:0:0,-78.2678,-827.148	0/0:446:446,0:446:15894:0:0:0,-134.259,-1420.41	0/1:82:46,36:46:1631:36:1279:-89.398,0,-119.946	0/1:65:23,42:23:820:42:1499:-114.476,0,-53.6635	0/0:75:75,0:75:2660:0:0:0,-22.5772,-239.197	0/0:140:140,0:140:4955:0:0:0,-42.1442,-441.702	0/1:47:23,24:23:816:24:851:-62.0989,0,-58.9531	0/1:66:37,29:37:1303:29:1036:-73.6399,0,-97.6515	0/1:67:35,32:35:1251:32:1120:-80.1707,0,-91.8162	0/1:39:25,14:25:855:14:496:-33.1511,0,-64.874	0/1:67:35,32:35:1219:32:1144:-81.4088,0,-89.4794	0/1:73:33,40:33:1175:40:1413:-105.107,0,-83.9459	0/0:231:231,0:231:8284:0:0:0,-69.5379,-741.689	0/0:97:97,0:97:3439:0:0:0,-29.1999,-308.928
chr09	23895565	.	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chr09	23916866	.	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chr09	23916881	.	G	A	26967.2	PASS	AB=0.466153;ABP=39.1712;AC=47;AF=0.252688;AN=186;AO=1711;CIGAR=1X;DP=9114;DPB=9114;DPRA=0.842314;EPP=3718.4;EPPR=16067.6;GTI=5;LEN=1;MEANALT=1.01818;MQM=53.8399;MQMR=59.7555;NS=93;NUMALT=1;ODDS=0.384674;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60742;QR=263878;RO=7398;RPL=0;RPP=3718.4;RPPR=16067.6;RPR=1711;RUN=1;SAF=1711;SAP=3718.4;SAR=0;SRF=7398;SRP=16067.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:57:57,0:57:2002:0:0:0,-17.1587,-180.309	0/1:60:23,37:23:809:37:1302:-99.1959,0,-55.0647	0/1:169:73,96:73:2628:96:3448:-258.952,0,-185.892	0/0:287:286,1:286:10238:1:36:0,-82.8042,-917.679	0/1:94:42,52:42:1497:52:1827:-136.189,0,-106.724	0/1:65:41,24:41:1449:24:849:-56.9908,0,-111.132	0/1:101:64,37:64:2232:37:1332:-89.5586,0,-170.716	0/0:101:101,0:101:3582:0:0:0,-30.404,-322.537	0/1:88:41,47:41:1438:47:1643:-121.423,0,-103.217	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.156	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.845	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.772	0/0:60:60,0:60:2145:0:0:0,-18.0618,-193.316	0/0:65:65,0:65:2325:0:0:0,-19.5669,-209.508	0/1:65:36,29:36:1296:29:1010:-71.4825,0,-97.377	0/1:62:34,28:34:1220:28:1008:-71.8582,0,-91.4414	0/1:47:19,28:19:684:28:1008:-76.5844,0,-47.1105	0/1:27:7,20:7:248:20:720:-56.836,0,-14.535	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.465	0/0:284:283,0:283:10081:0:0:0,-85.1915,-906.657	0/0:175:175,0:175:6186:0:0:0,-52.6802,-556.815	0/1:204:61,143:61:2188:143:5060:-391.77,0,-135.775	0/1:73:44,29:44:1576:29:1042:-71.5409,0,-120.147	0/0:83:82,0:82:2944:0:0:0,-24.6845,-264.692	0/0:113:113,0:113:4026:0:0:0,-34.0164,-362.449	0/0:282:281,0:281:10043:0:0:0,-84.5894,-903.417	0/1:334:198,136:198:7074:136:4813:-331.546,0,-536.148	0/1:35:20,14:20:720:14:504:-35.0386,0,-54.5341	0/0:243:243,0:243:8702:0:0:0,-73.1503,-783.155	0/0:131:131,0:131:4689:0:0:0,-39.4349,-422.084	0/1:58:35,23:35:1233:23:794:-54.1571,0,-93.8085	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:26:14,12:14:504:12:432:-31.3388,0,-37.8713	0/1:5:1,4:1:36:4:144:-11.7948,0,-2.09312	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2897	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0293	0/1:167:95,72:95:3374:72:2569:-180.371,0,-253.597	0/0:258:257,0:257:9148:0:0:0,-77.3647,-822.65	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.711	.:.:.:.:.:.:.:.	0/1:126:62,64:62:2224:64:2255:-164.893,0,-162.493	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.462	0/0:180:179,1:179:6379:1:36:0,-50.5888,-570.579	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1812	0/0:51:51,0:51:1809:0:0:0,-15.3525,-162.649	0/1:117:51,66:51:1828:66:2312:-172.336,0,-129.576	0/0:141:141,0:141:4933:0:0:0,-42.4452,-444.104	0/0:182:180,2:180:6344:2:72:0,-47.9638,-564.207	0/0:168:168,0:168:5990:0:0:0,-50.573,-539.161	0/1:132:77,55:77:2760:55:1953:-135.007,0,-208.897	0/1:177:92,85:92:3308:85:3052:-221.35,0,-244.653	0/1:8:7,1:7:252:1:36:-1.18318,0,-20.6207	0/0:118:118,0:118:4229:0:0:0,-35.5215,-380.786	0/1:88:53,35:53:1889:35:1256:-86.4316,0,-143.792	0/1:14:7,7:7:248:7:237:-17.4224,0,-18.4498	0/0:174:174,0:174:6154:0:0:0,-52.3792,-553.947	0/1:18:15,3:15:540:3:108:-4.63744,0,-43.5156	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:20:16,4:16:576:4:144:-7.2793,0,-46.1526	0/1:83:42,41:42:1512:41:1427:-103.463,0,-111.384	0/0:121:118,3:118:4236:3:108:0,-26.3627,-371.341	1/1:3:0,3:0:0:3:108:-10.056,-0.90309,0	0/1:193:100,93:100:3577:93:3329:-240.91,0,-263.541	0/0:184:184,0:184:6547:0:0:0,-55.3895,-589.159	0/1:69:45,24:45:1612:24:849:-55.8505,0,-124.596	0/1:79:56,23:56:1989:23:828:-50.84,0,-155.494	0/1:77:45,32:45:1612:32:1118:-76.7066,0,-122.19	0/0:254:254,0:254:9034:0:0:0,-76.4616,-812.391	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.775	0/1:84:56,28:56:1989:28:1008:-65.4536,0,-153.994	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.758	0/1:13:5,8:5:176:8:288:-22.1624,0,-12.2716	0/0:208:208,0:208:7373:0:0:0,-62.6142,-663.582	0/1:63:45,18:45:1620:18:633:-38.2702,0,-127.054	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.246	0/0:234:234,0:234:8408:0:0:0,-70.441,-756.559	0/1:138:71,67:71:2548:67:2359:-170.403,0,-188.026	0/0:89:88,1:88:3134:1:36:0,-23.1971,-278.688	0/1:15:10,5:10:360:5:180:-11.7053,0,-28.2279	0/0:118:117,1:117:4200:1:36:0,-31.9284,-374.577	0/0:98:97,1:97:3488:1:36:0,-25.9648,-310.59	0/0:193:191,2:191:6784:2:57:0,-52.8516,-605.191	0/1:49:24,25:24:856:25:885:-64.9286,0,-62.6097	0/1:52:27,25:27:968:25:900:-65.3957,0,-71.7791	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8394	0/0:102:100,2:100:3592:2:72:0,-23.8814,-316.649	0/1:23:5,18:5:180:18:637:-50.6669,0,-9.62837	0/1:56:29,27:29:1044:27:964:-70.1408,0,-77.4135	0/1:75:46,29:46:1652:29:1021:-69.4336,0,-126.39	0/1:30:20,10:20:720:10:360:-23.4146,0,-56.0933	0/1:116:73,43:73:2601:43:1529:-102.666,0,-199.412	0/1:39:12,27:12:432:27:972:-75.8974,0,-27.4787	0/0:74:74,0:74:2622:0:0:0,-22.2762,-236.213	0/0:76:76,0:76:2690:0:0:0,-22.8783,-242.337
chr09	23929656	.	ACGA	ATGC,ATGA	239639	PASS	AB=0.606552,0.386207;ABP=288.989,329.18;AC=150,38;AF=0.797872,0.202128;AN=188;AO=9656,1161;CIGAR=1M1X1M1X,1M1X2M;DP=10880;DPB=10883.2;DPRA=0,0.712407;EPP=18847.3,2524.09;EPPR=5.18177;GTI=3;LEN=4,1;MEANALT=2.17021,2.61538;MQM=59.9463,59.9371;MQMR=60;NS=94;NUMALT=2;ODDS=0.181511;PAIRED=0,0;PAIREDR=0;PAO=4.33333,4.33333;PQA=147.333,147.333;PQR=147.333;PRO=4.33333;QA=335071,41593;QR=34;RO=1;RPL=9405,1161;RPP=18847.3,2524.09;RPPR=5.18177;RPR=251,0;RUN=1,1;SAF=0,0;SAP=20970.7,2524.09;SAR=9656,1161;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,36,0:0:0:36,0:1239,0:-111.593,-10.8371,0,-111.593,-10.8371,-111.593	1/2:129:0,92,37:0:0:92,37:3190,1317:-366.969,-107.692,-79.997,-259.631,0,-248.493	1/2:61:0,44,17:0:0:44,17:1540,612:-175.584,-50.2959,-37.0506,-125.645,0,-120.527	1/1:233:0,231,0:0:0:231,0:8082,0:-727.173,-69.5379,0,-727.173,-69.5379,-727.173	1/2:43:0,24,19:0:0:24,19:842,684:-124.687,-56.1708,-48.946,-68.8718,0,-63.1523	1/2:46:0,26,20:0:0:26,20:915,720:-133.59,-59.1082,-51.2814,-74.8384,0,-68.8178	1/2:123:0,89,34:0:0:89,34:3124,1216:-353.735,-99.5115,-72.7199,-254.579,0,-244.344	1/1:156:0,155,0:0:0:155,0:5292,0:-476.154,-46.6597,0,-476.154,-46.6597,-476.154	1/2:74:0,49,25:0:0:49,25:1703,896:-211.881,-73.4346,-58.6841,-138.801,0,-131.275	1/1:92:0,92,0:0:0:92,0:3170,0:-285.518,-27.6948,0,-285.518,-27.6948,-285.518	1/1:113:0,113,0:0:0:113,0:3862,0:-347.783,-34.0164,0,-347.783,-34.0164,-347.783	1/1:42:0,40,0:0:0:40,0:1367,0:-122.964,-12.0412,0,-122.964,-12.0412,-122.964	1/1:52:0,52,0:0:0:52,0:1796,0:-161.859,-15.6536,0,-161.859,-15.6536,-161.859	1/1:57:0,55,0:0:0:55,0:1921,0:-172.804,-16.5567,0,-172.804,-16.5567,-172.804	1/2:35:0,21,14:0:0:21,14:731,504:-100.917,-41.4837,-35.162,-59.7886,0,-55.5742	1/2:39:0,17,22:0:0:17,22:562,792:-110.414,-64.983,-59.8655,-45.7743,0,-39.1517	1/2:35:0,19,16:0:0:19,16:644,567:-98.7532,-46.5442,-40.8247,-52.5561,0,-47.7396	1/2:44:0,20,24:0:0:20,24:708,860:-128.166,-70.4971,-64.4765,-58.0243,0,-50.7996	1/1:89:0,88,0:0:0:88,0:3063,0:-275.539,-26.4906,0,-275.539,-26.4906,-275.539	1/1:223:0,223,0:0:0:223,0:7770,0:-699.333,-67.1297,0,-699.333,-67.1297,-699.333	1/1:141:0,141,0:0:0:141,0:4803,0:-432.438,-42.4452,0,-432.438,-42.4452,-432.438	1/2:68:0,32,36:0:0:32,36:1116,1288:-195.99,-105.232,-95.5995,-90.9589,0,-80.1218	1/2:44:0,36,8:0:0:36,8:1253,288:-125.735,-23.8592,-13.0221,-102.233,0,-99.825	1/1:145:0,144,0:0:0:144,0:5035,0:-453.026,-43.3483,0,-453.026,-43.3483,-453.026	1/1:47:0,46,1:0:0:46,1:1602,36:-144.108,-13.8474,0,-141.17,-10.5501,-140.869	1/1:327:0,325,0:0:0:325,0:11253,0:-1012.28,-97.8348,0,-1012.28,-97.8348,-1012.28	1/2:169:0,112,56:0:0:112,56:3852,2000:-475.868,-163.056,-129.341,-312.804,0,-295.946	1/2:20:0,9,11:0:0:9,11:302,396:-57.121,-32.6714,-29.9621,-24.796,0,-21.4846	1/1:261:0,259,0:0:0:259,0:9003,0:-809.927,-77.9668,0,-809.927,-77.9668,-809.927	1/1:207:0,206,0:0:0:206,0:7188,0:-646.632,-62.0122,0,-646.632,-62.0122,-646.632	1/2:114:0,67,47:0:0:67,47:2356,1688:-329.577,-137.803,-117.634,-192.13,0,-177.981	1/1:281:0,280,0:0:0:280,0:9836,0:-884.894,-84.2884,0,-884.894,-84.2884,-884.894	1/1:138:0,134,1:0:0:134,1:4689,36:-421.853,-40.338,0,-418.916,-37.3873,-418.615	1/1:129:0,129,0:0:0:129,0:4500,0:-405.176,-38.8329,0,-405.176,-38.8329,-405.176	1/1:504:0,503,0:0:0:503,0:17563,0:-1579.98,-151.418,0,-1579.98,-151.418,-1579.98	1/1:233:0,231,1:0:0:231,1:8065,36:-725.586,-69.5379,0,-722.649,-66.5406,-722.348	1/2:145:0,56,88:0:0:56,88:1916,3144:-411.898,-256.391,-239.533,-155.551,0,-129.06	1/1:125:0,125,0:0:0:125,0:4319,0:-388.895,-37.6288,0,-388.895,-37.6288,-388.895	1/1:154:0,153,0:0:0:153,0:5275,0:-474.598,-46.0576,0,-474.598,-46.0576,-474.598	1/1:99:0,97,1:0:0:97,1:3361,36:-302.409,-29.1999,0,-299.471,-26.2026,-299.17	1/2:134:0,77,54:0:0:77,54:2670,1940:-375.266,-158.25,-135.071,-217.084,0,-200.829	1/1:69:0,69,0:0:0:69,0:2404,0:-216.616,-20.7711,0,-216.616,-20.7711,-216.616	1/1:102:0,102,0:0:0:102,0:3536,0:-318.454,-30.7051,0,-318.454,-30.7051,-318.454	1/1:50:0,50,0:0:0:50,0:1695,0:-152.831,-15.0515,0,-152.831,-15.0515,-152.831	1/1:39:0,39,0:0:0:39,0:1294,0:-116.75,-11.7402,0,-116.75,-11.7402,-116.75	1/2:43:0,19,24:0:0:19,24:679,864:-126.013,-70.6554,-64.9358,-55.5194,0,-48.2946	1/1:154:0,153,1:0:0:153,1:5326,36:-479.125,-46.0576,0,-476.188,-42.7603,-475.887	1/1:189:0,188,0:0:0:188,0:6477,0:-582.804,-56.5936,0,-582.804,-56.5936,-582.804	1/1:106:0,106,0:0:0:106,0:3708,0:-333.924,-31.9092,0,-333.924,-31.9092,-333.924	1/2:78:0,47,30:0:0:47,30:1626,1076:-219.393,-87.7622,-73.6138,-131.624,0,-122.593	1/2:198:0,120,76:0:0:120,76:4177,2724:-561.8,-222.161,-186.037,-339.635,0,-316.756	1/1:174:0,168,5:0:0:168,5:5856,180:-526.818,-50.573,0,-512.131,-35.8006,-510.625	1/1:173:0,171,0:0:0:171,0:5919,0:-532.528,-51.4761,0,-532.528,-51.4761,-532.528	1/2:39:0,29,10:0:0:29,10:1022,360:-112.939,-29.734,-21.0041,-83.5627,0,-80.5524	1/1:214:0,208,6:0:0:208,6:7245,212:-651.765,-62.6142,0,-634.5,-44.9956,-632.694	1/1:125:0,124,0:0:0:124,0:43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chr09	23929666	.	A	G	15434.2	PASS	AB=0.39446;ABP=278.94;AC=38;AF=0.202128;AN=188;AO=1177;CIGAR=1X;DP=10668;DPB=10668;DPRA=0.695138;EPP=2550.15;EPPR=18673.1;GTI=2;LEN=1;MEANALT=1.03636;MQM=59.9074;MQMR=59.9402;NS=94;NUMALT=1;ODDS=1.53585;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41984;QR=339451;RO=9488;RPL=1176;RPP=2550.15;RPPR=18673.1;RPR=1;RUN=1;SAF=0;SAP=2558.83;SAR=1177;SRF=0;SRP=20605.9;SRR=9488;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:129:91,38:91:3268:38:1356:-83.5076,0,-255.507	0/1:58:42,16:42:1504:16:568:-33.9921,0,-118.195	0/0:231:231,0:231:8273:0:0:0,-69.5379,-744.573	0/1:42:24,18:24:860:18:644:-45.6473,0,-65.0786	0/1:46:25,21:25:892:21:748:-53.7979,0,-66.7523	0/1:122:88,34:88:3164:34:1212:-72.6323,0,-248.128	0/0:148:148,0:148:5291:0:0:0,-44.5524,-476.325	0/1:75:49,26:49:1760:26:918:-60.3586,0,-136.098	0/0:90:88,2:88:3156:2:72:0,-20.256,-277.342	0/0:112:112,0:112:4008:0:0:0,-33.7154,-360.909	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.784	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.475	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:34:21,13:21:756:13:450:-30.5935,0,-58.1322	0/1:38:17,21:17:608:21:756:-56.9281,0,-43.6129	0/1:34:18,16:18:648:16:559:-40.4026,0,-48.4169	0/1:44:20,24:20:720:24:860:-64.4765,0,-51.8835	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:217:217,0:217:7761:0:0:0,-65.3235,-698.492	0/0:139:139,0:139:4957:0:0:0,-41.8432,-446.28	0/1:67:32,35:32:1137:35:1256:-93.1763,0,-82.468	0/1:42:33,9:33:1176:9:316:-16.1356,0,-93.5045	0/0:144:144,0:144:5135:0:0:0,-43.3483,-462.283	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:322:322,0:322:11489:0:0:0,-96.9317,-1033.83	0/1:166:111,55:111:3963:55:1956:-126.345,0,-306.873	0/1:19:8,11:8:284:11:396:-30.2632,0,-20.1838	0/0:254:254,0:254:9085:0:0:0,-76.4616,-817.352	0/0:200:200,0:200:7143:0:0:0,-60.206,-642.929	0/1:109:64,45:64:2304:45:1595:-110.791,0,-174.808	0/0:276:276,0:276:9865:0:0:0,-83.0843,-887.793	0/0:136:135,1:135:4825:1:36:0,-37.3418,-430.796	0/0:125:125,0:125:4476:0:0:0,-37.6287,-403.009	0/0:489:489,0:489:17486:0:0:0,-147.204,-1573.36	0/0:229:228,0:228:8161:0:0:0,-68.6348,-734.143	0/1:142:54,88:54:1936:88:3148:-240.798,0,-131.77	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.895	0/0:152:150,2:150:5349:2:68:0,-39.2988,-475.056	0/0:95:94,1:94:3372:1:36:0,-24.9996,-300.097	0/1:129:73,55:73:2612:55:1948:-136.815,0,-196.584	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:99:99,0:99:3528:0:0:0,-29.802,-317.731	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:40:40,0:40:1410:0:0:0,-12.0412,-127.195	0/1:43:19,24:19:680:24:856:-64.4168,0,-48.5849	0/0:153:152,1:152:5429:1:36:0,-42.4593,-485.14	0/0:181:180,1:180:6448:1:36:0,-50.8882,-576.808	0/0:105:104,1:104:3719:1:36:0,-28.0099,-331.313	0/1:77:47,29:47:1688:29:1044:-71.1952,0,-129.128	0/1:197:119,78:119:4268:78:2792:-192.213,0,-324.908	0/0:171:165,6:165:5912:6:212:0,-32.0513,-512.677	0/0:171:171,0:171:6131:0:0:0,-51.4761,-551.888	0/1:38:28,10:28:1008:10:360:-21.3052,0,-79.5972	0/0:213:207,6:207:7400:6:212:0,-44.6946,-646.621	0/0:123:122,1:122:4355:1:36:0,-33.4284,-388.527	0/1:32:14,18:14:492:18:640:-48.2964,0,-34.9794	0/0:304:304,0:304:10885:0:0:0,-91.5131,-979.232	0/0:255:243,12:243:8712:12:432:0,-37.5414,-744.848	0/1:58:26,32:26:936:32:1148:-86.1701,0,-67.0997	0/0:104:104,0:104:3731:0:0:0,-31.3071,-335.977	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.034	0/1:149:78,71:78:2777:71:2540:-183.998,0,-205.317	0/0:214:210,4:210:7520:4:144:0,-51.1068,-663.374	0/1:81:51,30:51:1836:30:1068:-72.0415,0,-141.137	0/1:58:41,17:41:1468:17:608:-37.5923,0,-114.956	0/1:125:86,39:86:3065:39:1392:-87.9503,0,-238.18	0/0:92:91,1:91:3241:1:36:0,-24.0965,-288.311	0/0:89:88,1:88:3156:1:36:0,-23.1934,-280.537	0/1:58:35,23:35:1247:23:828:-57.3844,0,-95.0743	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/0:76:69,7:69:2476:7:248:0,-0.214085,-200.429	0/0:175:175,0:175:6244:0:0:0,-52.6802,-562.055	0/1:50:20,30:20:720:30:1072:-81.741,0,-50.0773	0/0:130:130,0:130:4660:0:0:0,-39.1339,-419.071	0/0:203:203,0:203:7285:0:0:0,-61.1091,-655.697	0/1:66:46,20:46:1652:20:720:-45.2526,0,-128.783	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:82:81,1:81:2900:1:36:0,-21.0862,-257.638	0/0:126:126,0:126:4509:0:0:0,-37.9298,-405.976	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.283	0/0:202:198,4:198:7065:4:144:0,-47.4944,-622.464	0/1:70:35,35:35:1244:35:1252:-91.913,0,-91.1926	0/1:28:13,15:13:468:15:523:-38.9696,0,-34.0308	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:100:100,0:100:3561:0:0:0,-30.103,-320.674	0/1:34:16,18:16:572:18:635:-47.2419,0,-41.5784	0/1:59:37,22:37:1323:22:784:-53.1231,0,-101.611	0/1:38:18,20:18:644:20:712:-52.9675,0,-46.8515	0/1:56:45,11:45:1608:11:396:-19.1251,0,-128.152	0/1:199:165,34:165:5903:34:1216:-49.7967,0,-471.405	0/1:40:16,24:16:572:24:856:-65.3199,0,-39.7722	0/0:69:69,0:69:2453:0:0:0,-20.7711,-221.023	0/0:59:59,0:59:2111:0:0:0,-17.7608,-190.258
chr09	23929675	.	C	T	15115.7	PASS	AB=0.382022;ABP=358.083;AC=39;AF=0.207447;AN=188;AO=1157;CIGAR=1X;DP=10727;DPB=10727;DPRA=0.667272;EPP=2515.4;EPPR=20621.4;GTI=3;LEN=1;MEANALT=1.09804;MQM=59.9032;MQMR=59.9507;NS=94;NUMALT=1;ODDS=0.24415;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41278;QR=341367;RO=9559;RPL=1157;RPP=2515.4;RPPR=20621.4;RPR=0;RUN=1;SAF=0;SAP=2515.4;SAR=1157;SRF=0;SRP=20760.1;SRR=9559;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:130:92,38:92:3277:38:1368:-84.2869,0,-256.015	0/1:58:43,15:43:1540:15:540:-31.4768,0,-121.433	0/0:225:225,0:225:8048:0:0:0,-67.7317,-724.34	0/1:42:24,18:24:856:18:644:-45.6473,0,-64.7178	0/1:46:25,21:25:881:21:740:-53.076,0,-65.7585	0/1:123:87,36:87:3101:36:1292:-79.5253,0,-242.16	0/0:152:152,0:152:5429:0:0:0,-45.7566,-488.739	0/1:73:48,25:48:1724:25:881:-57.6307,0,-133.462	0/0:89:88,0:88:3152:0:0:0,-26.4906,-283.459	0/0:112:112,0:112:3984:0:0:0,-33.7154,-358.753	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.78	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:35:21,13:21:752:13:464:-31.5029,0,-57.4115	0/1:39:17,22:17:608:22:777:-58.5102,0,-43.3119	0/1:33:19,14:19:684:14:489:-34.4049,0,-51.9563	0/1:44:20,24:20:720:24:864:-64.8372,0,-51.8835	0/0:86:85,1:85:3056:1:36:0,-22.2903,-271.67	0/0:216:216,0:216:7699:0:0:0,-65.0225,-692.931	0/0:138:138,0:138:4929:0:0:0,-41.5421,-443.76	0/1:68:32,36:32:1137:36:1281:-95.1212,0,-82.1669	0/1:44:35,9:35:1248:9:320:-15.897,0,-99.3795	0/0:143:143,0:143:5105:0:0:0,-43.0473,-459.585	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:325:325,0:325:11607:0:0:0,-97.8347,-1044.44	0/1:166:110,56:110:3921:56:2008:-131.022,0,-303.112	0/1:20:9,10:9:324:10:356:-26.3022,0,-23.4265	0/0:258:257,0:257:9136:0:0:0,-77.3647,-821.366	0/0:206:206,0:206:7354:0:0:0,-62.0122,-661.907	0/1:109:65,44:65:2324:44:1565:-108.071,0,-176.608	0/0:278:277,0:277:9872:0:0:0,-83.3853,-888.062	0/0:137:136,1:136:4816:1:36:0,-37.6428,-429.989	0/0:128:128,0:128:4588:0:0:0,-38.5318,-413.084	0/0:497:496,0:496:17722:0:0:0,-149.311,-1594.27	0/0:232:231,0:231:8273:0:0:0,-69.5379,-744.218	0/1:142:56,86:56:2004:86:3073:-234.051,0,-137.887	0/0:121:121,0:121:4337:0:0:0,-36.4246,-390.503	0/0:152:152,0:152:5439:0:0:0,-45.7566,-489.449	0/0:99:98,1:98:3489:1:36:0,-26.2037,-310.623	0/1:130:76,53:76:2709:53:1855:-127.945,0,-204.86	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:100:100,0:100:3546:0:0:0,-30.103,-319.347	0/0:48:48,0:48:1686:0:0:0,-14.4494,-152.022	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.946	0/1:42:18,24:18:644:24:864:-65.4393,0,-45.6473	0/0:152:150,2:150:5369:2:72:0,-38.9198,-476.503	0/0:188:188,0:188:6706:0:0:0,-56.5936,-603.615	0/0:106:106,0:106:3793:0:0:0,-31.9092,-341.566	0/1:76:48,28:48:1709:28:985:-66.0832,0,-131.168	0/1:197:120,77:120:4278:77:2772:-190.413,0,-325.893	0/0:170:165,5:165:5901:5:180:0,-34.623,-514.446	0/0:171:171,0:171:6140:0:0:0,-51.4761,-552.697	0/1:39:29,10:29:1036:10:360:-21.0041,0,-81.8137	0/0:213:208,5:208:7417:5:180:0,-47.5673,-651.026	0/0:124:124,0:124:4433:0:0:0,-37.3277,-399.14	0/1:32:15,17:15:536:17:604:-45.0576,0,-38.9419	0/0:305:304,0:304:10863:0:0:0,-91.5131,-977.208	0/0:257:248,9:248:8843:9:324:0,-47.8589,-766.349	0/1:58:26,32:26:932:32:1117:-83.3757,0,-66.7391	0/0:104:100,4:100:3556:4:144:0,-17.9935,-306.922	0/0:105:105,0:105:3757:0:0:0,-31.6081,-338.328	0/1:155:84,71:84:3000:71:2532:-181.472,0,-223.573	0/0:208:203,4:203:7250:4:144:0,-49.3594,-639.206	0/1:82:52,30:52:1868:30:1080:-72.8112,0,-143.525	0/1:61:43,18:43:1548:18:644:-39.9278,0,-121.25	0/1:125:86,39:86:3072:39:1389:-87.6782,0,-238.95	0/0:90:89,1:89:3188:1:36:0,-23.4944,-283.545	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.776	0/1:57:34,23:34:1212:23:824:-57.3246,0,-92.2276	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:75:68,7:68:2428:7:252:-0.451711,0,-196.199	0/0:182:182,0:182:6497:0:0:0,-54.7875,-584.815	0/1:51:22,29:22:788:29:1040:-78.5618,0,-55.8923	0/0:133:133,0:133:4738:0:0:0,-40.037,-426.087	0/0:201:201,0:201:7178:0:0:0,-60.507,-646.074	0/1:64:44,20:44:1554:20:720:-45.8547,0,-120.564	0/0:83:83,0:83:2952:0:0:0,-24.9855,-265.912	0/0:84:83,1:83:2964:1:32:0,-22.0872,-263.794	0/0:129:129,0:129:4589:0:0:0,-38.8329,-413.176	0/0:78:78,0:78:2774:0:0:0,-23.4803,-249.898	0/0:202:201,1:201:7166:1:36:0,-57.2098,-641.339	0/1:69:34,34:34:1220:34:1220:-89.277,0,-89.277	0/1:28:13,15:13:468:15:536:-40.146,0,-34.0308	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/1:33:16,17:16:576:17:612:-45.4794,0,-42.241	0/1:60:38,22:38:1360:22:792:-53.5439,0,-104.639	0/1:39:18,21:18:640:21:752:-56.2661,0,-46.1891	0/1:57:46,11:46:1644:11:396:-18.824,0,-131.09	0/1:195:161,34:161:5776:34:1201:-49.6479,0,-461.223	0/1:40:17,23:17:612:23:813:-61.4479,0,-43.3722	0/0:78:78,0:78:2775:0:0:0,-23.4803,-249.991	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947
chr09	23935285	.	A	T	181864	PASS	AB=0.322332;ABP=12314.7;AC=91;AF=0.484043;AN=188;AO=14495;CIGAR=1X;DP=45161;DPB=45161;DPRA=44.1349;EPP=31478.5;EPPR=66547.8;GTI=14;LEN=1;MEANALT=1.16129;MQM=42.7345;MQMR=59.1323;NS=94;NUMALT=1;ODDS=7.0331;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=519080;QR=1097835;RO=30649;RPL=0;RPP=31478.5;RPPR=66547.8;RPR=14495;RUN=1;SAF=14495;SAP=31478.5;SAR=0;SRF=30649;SRP=66556.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:206:134,72:134:4801:72:2572:-164.957,0,-370.014	0/1:741:416,325:416:14863:325:11664:-801.316,0,-1113.2	0/1:466:306,160:306:10984:160:5736:-363.188,0,-848.059	0/1:703:462,241:462:16526:241:8640:-544.456,0,-1274.78	0/1:364:246,118:246:8805:118:4227:-257.253,0,-682.498	0/1:342:241,101:241:8621:101:3616:-213.229,0,-672.556	0/1:715:528,186:528:18937:186:6676:-372.344,0,-1488.3	0/1:866:623,243:623:22242:243:8704:-504.768,0,-1739.63	0/1:498:324,173:324:11601:173:6179:-395.551,0,-893.905	0/1:468:316,152:316:11317:152:5440:-338.396,0,-877.304	0/1:373:277,96:277:9941:96:3440:-186.886,0,-780.141	0/1:378:256,122:256:9196:122:4368:-269.402,0,-713.159	0/1:259:202,57:202:7260:57:2052:-102.258,0,-574.941	0/1:365:251,114:251:8982:114:4089:-249.54,0,-698.061	0/1:241:182,59:182:6540:59:2120:-114.171,0,-515.684	0/0:194:176,17:176:6309:17:608:0,-4.57821,-513.587	0/1:355:222,133:222:7988:133:4761:-310.966,0,-611.973	0/1:239:174,65:174:6217:65:2332:-133.584,0,-487.598	0/1:202:157,45:157:5640:45:1601:-79.4864,0,-446.598	0/1:1003:635,368:635:22769:368:13204:-855.725,0,-1743.85	0/1:798:444,354:444:15906:354:12664:-868.265,0,-1190.82	0/1:383:243,140:243:8712:140:5016:-321.604,0,-667.967	0/1:707:460,247:460:16512:247:8830:-556.911,0,-1272.19	0/1:653:448,205:448:16042:205:7340:-448.861,0,-1246.19	0/1:354:210,144:210:7532:144:5133:-343.847,0,-570.655	0/1:1685:969,713:969:34694:713:25534:-1713.23,0,-2613.05	0/1:1257:697,560:697:24939:560:20065:-1374.88,0,-1864.35	0/1:179:93,86:93:3348:86:3084:-216.339,0,-247.091	0/1:1908:1289,618:1289:46072:618:22154:-1352.79,0,-3566.85	0/1:631:498,132:498:17861:132:4725:-224.658,0,-1416.11	0/1:775:612,162:612:21898:162:5812:-276.712,0,-1734.14	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9791	0/1:53:43,10:43:1521:10:360:-15.9398,0,-121.217	0/1:66:59,7:59:2116:7:248:-2.46411,0,-170.841	0/1:40:28,12:28:992:12:432:-26.3811,0,-77.5445	0/1:59:44,15:44:1584:15:536:-29.5925,0,-125.082	0/1:847:706,141:706:25273:141:5062:-186.578,0,-2016.38	0/1:775:613,162:613:21954:162:5800:-274.468,0,-1737.89	0/1:431:252,179:252:9048:179:6420:-435.443,0,-683.273	0/1:22:15,7:15:536:7:252:-16.0224,0,-41.9503	0/1:754:403,351:403:14430:351:12564:-871.532,0,-1071.18	0/1:121:99,22:99:3552:22:777:-32.3556,0,-283.436	0/1:799:576,223:576:20685:223:7992:-460.833,0,-1618.49	0/1:393:258,135:258:9268:135:4860:-310.111,0,-715.204	0/1:264:191,73:191:6822:73:2584:-147.658,0,-533.882	0/1:380:253,127:253:9017:127:4560:-283.568,0,-696.618	0/1:502:381,121:381:13673:121:4336:-228.374,0,-1077.35	0/1:783:594,189:594:21281:189:6768:-360.022,0,-1676.55	0/1:479:362,117:362:12964:117:4177:-220.078,0,-1022.05	0/1:538:414,124:414:14820:124:4413:-223.931,0,-1171.26	0/1:621:490,130:490:17513:130:4672:-223.021,0,-1388.24	0/1:28:24,4:24:860:4:144:-4.62434,0,-69.0605	0/1:597:421,176:421:15068:176:6297:-373.245,0,-1175.69	0/1:387:237,150:237:8484:150:5377:-352.543,0,-646.948	0/0:52:48,4:48:1720:4:144:0,-2.5699,-141.993	0/1:670:492,178:492:17653:178:6333:-352.9,0,-1386.08	0/1:279:179,100:179:6416:100:3584:-230.563,0,-493.079	0/1:17:6,11:6:216:11:392:-29.5257,0,-14.6721	0/1:43:36,7:36:1296:7:252:-9.47298,0,-103.996	0/1:588:405,183:405:14486:183:6572:-398.544,0,-1125.71	0/1:554:335,217:335:12040:217:7784:-515.061,0,-916.367	0/1:27:13,14:13:468:14:500:-36.4096,0,-34.3318	0/1:830:517,313:517:18508:313:11216:-727.04,0,-1414.26	0/1:878:612,266:612:21964:266:9517:-563.123,0,-1711	0/1:408:299,109:299:10681:109:3884:-218.705,0,-838.211	0/1:358:268,90:268:9636:90:3193:-169.212,0,-759.149	0/1:714:487,227:487:17442:227:8101:-496.999,0,-1353.42	0/1:280:203,77:203:7272:77:2757:-158.624,0,-570.105	0/1:208:149,59:149:5296:59:2116:-123.579,0,-413.258	0/1:369:297,72:297:10625:72:2584:-117.075,0,-844.593	0/1:292:187,105:187:6696:105:3756:-241.035,0,-514.342	0/1:160:96,64:96:3432:64:2304:-152.541,0,-260.884	0/1:726:477,249:477:17083:249:8931:-566.822,0,-1317.75	0/1:119:93,26:93:3302:26:915:-44.7817,0,-261.458	0/1:1520:826,693:826:29475:693:24783:-1714.4,0,-2192.36	0/1:956:669,287:669:23969:287:10300:-620.048,0,-1867.81	0/1:838:549,289:549:19676:289:10344:-659.1,0,-1517.68	0/1:448:382,66:382:13661:66:2372:-75.2109,0,-1094	0/1:32:26,6:26:932:6:216:-9.66252,0,-74.5655	0/1:433:278,155:278:9968:155:5560:-353.471,0,-766.332	0/1:394:238,156:238:8528:156:5577:-372.323,0,-648.419	0/1:1050:904,146:904:32373:146:5240:-144.63,0,-2595.63	0/1:446:272,173:272:9772:173:6189:-407.634,0,-744.721	0/1:328:193,134:193:6924:134:4804:-324.303,0,-524.332	0/1:264:185,79:185:6640:79:2828:-169.271,0,-518.076	0/1:731:472,258:472:16948:258:9264:-594.87,0,-1303.85	0/1:228:150,78:150:5384:78:2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chr09	23935294	.	T	A	78889.7	PASS	AB=0.217276;ABP=29260.4;AC=84;AF=0.446809;AN=188;AO=9351;CIGAR=1X;DP=44835;DPB=44835;DPRA=10.238;EPP=20308.4;EPPR=76968.7;GTI=36;LEN=1;MEANALT=1.29348;MQM=59.3551;MQMR=52.3383;NS=94;NUMALT=1;ODDS=1.97781;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=333246;QR=1267969;RO=35444;RPL=0;RPP=20308.4;RPPR=76968.7;RPR=9351;RUN=1;SAF=9351;SAP=20308.4;SAR=0;SRF=35444;SRP=76968.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:204:122,82:122:4372:82:2916:-201.186,0,-327.745	0/0:730:667,63:667:23875:63:2218:0,-20.6427,-1923.42	0/1:466:399,67:399:14263:67:2396:-75.5475,0,-1130.15	0/1:700:461,239:461:16476:239:8531:-556.83,0,-1248.55	0/1:355:298,57:298:10685:57:2044:-77.2565,0,-843.392	0/1:342:308,33:308:11017:33:1162:-1.85883,0,-878.648	0/1:714:615,99:615:21951:99:3544:-104.146,0,-1746.07	0/1:862:666,195:666:23828:195:6909:-362.094,0,-1865.94	0/1:497:405,90:405:14491:90:3206:-139.318,0,-1143.71	0/1:460:326,134:326:11667:134:4801:-293.675,0,-899.467	0/1:369:235,134:235:8392:134:4769:-317.87,0,-632.868	0/1:377:275,100:275:9855:100:3585:-209.522,0,-764.184	0/1:261:201,58:201:7196:58:2076:-108.767,0,-564.333	0/1:358:210,148:210:7552:148:5272:-366.587,0,-563.218	0/1:237:210,27:210:7528:27:955:-14.8444,0,-601.956	0/1:182:151,31:151:5411:31:1112:-45.6039,0,-430.955	0/1:356:297,59:297:10617:59:2101:-82.1415,0,-837.696	0/1:240:205,35:205:7368:35:1252:-40.6997,0,-585.997	0/1:201:135,66:135:4852:66:2360:-151.951,0,-371.998	0/1:995:789,206:789:28237:206:7332:-359.504,0,-2208.43	0/1:805:637,168:637:22763:168:6002:-297.876,0,-1772.92	0/1:384:327,56:327:11714:56:1985:-63.3582,0,-923.258	0/1:704:607,96:607:21696:96:3425:-96.1754,0,-1714.28	0/1:652:408,244:408:14593:244:8731:-589.209,0,-1100.96	0/1:350:272,78:272:9707:78:2763:-143.423,0,-757.35	0/1:1684:1261,418:1261:45117:418:14861:-830.293,0,-3475.93	0/1:1244:1077,167:1077:38474:167:5962:-161.886,0,-3034.73	0/0:178:165,13:165:5924:13:468:0,-11.1246,-482.795	0/1:1904:1451,453:1451:51988:453:16083:-872.2,0,-4034.93	0/1:621:429,191:429:15294:191:6807:-425.466,0,-1178.04	0/1:758:625,133:625:22322:133:4780:-201.993,0,-1765.28	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1279	0/1:53:41,12:41:1476:12:428:-22.9042,0,-116.33	0/0:63:63,0:63:2256:0:0:0,-18.9649,-202.991	0/1:39:30,9:30:1049:9:290:-14.6657,0,-82.2135	0/1:59:47,12:47:1669:12:428:-21.098,0,-131.51	0/1:838:725,113:725:26020:113:4047:-111.566,0,-2072.34	0/1:769:525,244:525:18746:244:8695:-550.335,0,-1438.31	0/1:425:307,118:307:11013:118:4214:-251.016,0,-849.661	0/1:22:16,6:16:557:6:182:-10.0552,0,-43.4675	0/1:748:651,97:651:23308:97:3431:-83.7885,0,-1842	0/1:116:74,42:74:2660:42:1512:-101.455,0,-203.208	0/1:798:576,221:576:20598:221:7833:-463.81,0,-1594.81	0/1:397:324,73:324:11623:73:2616:-116.032,0,-917.382	0/1:266:204,61:204:7289:61:2136:-112.177,0,-569.009	0/1:381:320,61:320:11463:61:2147:-78.7553,0,-902.084	0/1:498:348,150:348:12448:150:5353:-330.692,0,-959.03	0/1:782:565,216:565:20168:216:7684:-455.599,0,-1563.24	0/1:468:325,143:325:11596:143:5120:-319.752,0,-889.694	0/1:531:462,69:462:16530:69:2454:-61.2635,0,-1314.48	0/1:613:497,115:497:17813:115:4120:-186.228,0,-1406.98	0/1:28:21,7:21:756:7:252:-14.6001,0,-59.451	0/1:592:426,166:426:15269:166:5957:-357.596,0,-1181.55	0/1:387:338,48:338:12066:48:1701:-36.8158,0,-954.147	0/1:51:45,6:45:1616:6:216:-4.43798,0,-130.144	0/1:663:559,104:559:19932:104:3687:-132.304,0,-1578.28	0/1:283:231,52:231:8252:52:1856:-82.0834,0,-648.414	0/0:17:16,1:16:576:1:36:0,-1.51923,-47.5522	0/1:43:33,10:33:1184:10:345:-18.4365,0,-93.3162	0/1:578:483,94:483:17261:94:3357:-128.243,0,-1362.63	0/1:550:387,163:387:13874:163:5825:-358.43,0,-1063.45	0/0:25:24,1:24:864:1:36:0,-3.92747,-73.8135	0/1:830:748,82:748:26656:82:2903:-11.5002,0,-2115.68	0/1:867:678,189:678:24325:189:6734:-344.734,0,-1899.67	0/1:404:341,63:341:12175:63:2250:-81.1035,0,-965.133	0/0:358:339,19:339:12140:19:665:0,-47.6328,-1020.12	0/0:702:655,47:655:23423:47:1684:0,-59.5764,-1936.85	0/1:282:194,88:194:6914:88:3145:-198.276,0,-530.582	0/1:205:142,63:142:5073:63:2242:-140.162,0,-390.498	0/0:364:333,31:333:11936:31:1104:0,-10.1475,-969.225	0/1:288:177,108:177:6343:108:3853:-260.613,0,-475.493	0/1:155:134,21:134:4808:21:756:-21.6708,0,-380.196	0/1:721:500,218:500:17893:218:7703:-476.478,0,-1376.16	0/1:118:98,20:98:3493:20:720:-29.6072,0,-276.597	0/1:1507:1110,396:1110:39605:396:14059:-810.122,0,-3049.72	0/1:951:754,197:754:26988:197:7058:-348.543,0,-2121.8	0/1:835:736,98:736:26228:98:3493:-62.994,0,-2088.38	0/1:444:351,93:351:12569:93:3332:-166.404,0,-993.38	0/0:32:32,0:32:1133:0:0:0,-9.63296,-101.789	0/1:430:329,101:329:11793:101:3609:-195.47,0,-914.601	0/1:392:312,80:312:11145:80:2865:-139.935,0,-872.494	0/1:1027:713,313:713:25527:313:11161:-694.49,0,-1977.13	0/1:451:386,64:386:13788:64:2292:-70.5408,0,-1088.85	0/1:328:297,31:297:10664:31:1112:-1.64645,0,-851.115	0/1:264:178,86:178:6371:86:3088:-198.586,0,-487.978	0/1:726:554,169:554:19853:169:6041:-325.504,0,-1548.81	0/0:226:206,20:206:7396:20:716:0,-3.30646,-595.72	0/1:258:204,53:204:7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chr09	23935300	.	C	T	188293	PASS	AB=0.327335;ABP=11659.8;AC=91;AF=0.484043;AN=188;AO=14756;CIGAR=1X;DP=45271;DPB=45271;DPRA=37.4342;EPP=32045.3;EPPR=66007.3;GTI=14;LEN=1;MEANALT=1.13978;MQM=42.7438;MQMR=59.1347;NS=94;NUMALT=1;ODDS=27.1839;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=529078;QR=1091301;RO=30500;RPL=0;RPP=32045.3;RPPR=66007.3;RPR=14756;RUN=1;SAF=14756;SAP=32045.3;SAR=0;SRF=30500;SRP=66232.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:206:132,74:132:4711:74:2660:-172.592,0,-361.903	0/1:742:414,328:414:14818:328:11761:-810.115,0,-1108.8	0/1:468:306,162:306:10958:162:5786:-367.467,0,-845.092	0/1:706:460,246:460:16482:246:8818:-559.148,0,-1269.92	0/1:363:247,116:247:8851:116:4164:-253.171,0,-686.647	0/1:339:242,97:242:8646:97:3480:-202.052,0,-675.726	0/1:721:526,194:526:18880:194:6938:-394.429,0,-1481.35	0/1:863:621,242:621:22220:242:8688:-503.893,0,-1738.68	0/1:499:325,174:325:11618:174:6243:-400.782,0,-895.188	0/1:467:315,152:315:11287:152:5459:-339.28,0,-874.904	0/1:375:274,100:274:9818:100:3596:-199.27,0,-769.889	0/1:378:253,124:253:9071:124:4456:-277.227,0,-702.043	0/1:259:199,60:199:7143:60:2156:-111.479,0,-564.418	0/1:365:248,117:248:8872:117:4203:-259.566,0,-688.177	0/1:241:181,60:181:6504:60:2151:-116.934,0,-512.45	0/0:191:174,17:174:6252:17:612:0,-3.29602,-508.269	0/1:360:224,136:224:8040:136:4873:-318.765,0,-615.143	0/1:243:177,66:177:6335:66:2372:-135.917,0,-496.824	0/1:204:156,48:156:5599:48:1728:-90.0847,0,-442.378	0/1:1006:634,372:634:22713:372:13355:-867.419,0,-1739.68	0/1:812:444,368:444:15847:368:13186:-908.29,0,-1181.32	0/1:386:242,143:242:8668:143:5114:-328.718,0,-663.146	0/1:708:454,253:454:16256:253:9048:-574.673,0,-1248.7	0/1:659:447,212:447:15974:212:7584:-468.645,0,-1238.21	0/1:349:205,144:205:7340:144:5149:-346.305,0,-555.388	0/1:1698:977,720:977:34920:720:25852:-1735.58,0,-2628.54	0/1:1256:697,559:697:24944:559:20011:-1372.53,0,-1865.06	0/1:180:94,86:94:3368:86:3092:-216.676,0,-248.712	0/1:1913:1289,624:1289:46173:624:22395:-1371.12,0,-3575.83	0/1:630:496,134:496:17747:134:4816:-232.818,0,-1406.09	0/1:770:606,162:606:21700:162:5820:-278.957,0,-1719.74	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.094	0/1:52:42,10:42:1500:10:360:-16.2409,0,-119.632	0/1:65:58,7:58:2072:7:252:-3.11286,0,-167.184	0/1:38:27,11:27:972:11:396:-23.8005,0,-76.3494	0/1:55:41,14:41:1472:14:504:-28.4133,0,-116.211	0/1:842:698,144:698:24982:144:5156:-195.93,0,-1991.88	0/1:779:612,167:612:21821:167:5987:-288.712,0,-1725.5	0/1:427:248,179:248:8900:179:6415:-436.232,0,-671.172	0/1:22:15,7:15:540:7:252:-16.0224,0,-42.3121	0/1:768:404,364:404:14469:364:13048:-911.959,0,-1070.5	0/1:118:96,22:96:3432:22:792:-34.6155,0,-273.547	0/1:801:574,227:574:20567:227:8151:-474.861,0,-1605.96	0/1:401:260,141:260:9297:141:5064:-325.978,0,-715.442	0/1:267:185,82:185:6608:82:2948:-177.755,0,-513.804	0/1:384:251,133:251:8983:133:4757:-299.007,0,-692.361	0/1:498:375,122:375:13394:122:4371:-232.923,0,-1055.05	0/1:786:589,197:589:21070:197:7056:-384.498,0,-1656.7	0/1:480:360,120:360:12882:120:4299:-230.093,0,-1014.34	0/1:542:414,128:414:14840:128:4579:-234.018,0,-1171.81	0/1:623:493,130:493:17589:130:4663:-221.579,0,-1394.39	0/1:28:24,4:24:864:4:144:-4.62434,0,-69.4212	0/1:596:419,177:419:15027:177:6343:-377.835,0,-1172.26	0/1:393:240,153:240:8605:153:5481:-359.961,0,-656.026	0/0:52:48,4:48:1720:4:144:0,-2.5699,-141.992	0/1:668:487,179:487:17384:179:6413:-360.835,0,-1362.85	0/1:283:178,105:178:6367:105:3743:-244.018,0,-487.456	0/1:17:6,11:6:212:11:396:-29.8385,0,-14.3064	0/1:43:36,7:36:1287:7:252:-9.47298,0,-103.185	0/1:583:398,185:398:14247:185:6625:-404.293,0,-1105.45	0/1:554:331,223:331:11849:223:7998:-533.696,0,-898.986	0/1:27:13,14:13:468:14:500:-36.4421,0,-34.3318	0/1:839:519,320:519:18550:320:11454:-745.82,0,-1415.39	0/1:878:610,268:610:21835:268:9626:-573.951,0,-1699.5	0/1:410:294,116:294:10514:116:4154:-241.204,0,-822.574	0/1:358:259,99:259:9229:99:3532:-198.175,0,-722.626	0/1:711:481,230:481:17197:230:8225:-508.317,0,-1331.48	0/1:278:200,77:200:7164:77:2764:-158.607,0,-561.109	0/1:209:149,59:149:5334:59:2108:-122.664,0,-416.914	0/1:367:293,74:293:10490:74:2634:-122.096,0,-833.08	0/1:284:184,100:184:6600:100:3596:-229.373,0,-508.135	0/1:160:96,64:96:3412:64:2285:-151.577,0,-258.614	0/1:722:472,249:472:16839:249:8914:-566.856,0,-1297.41	0/1:121:96,25:96:3406:25:891:-41.5043,0,-270.178	0/1:1525:818,707:818:29199:707:25360:-1762.61,0,-2166.21	0/1:967:671,296:671:23992:296:10619:-644.879,0,-1866.67	0/1:847:554,293:554:19771:293:10505:-670.491,0,-1523.47	0/1:447:382,65:382:13642:65:2340:-72.6564,0,-1092.58	0/1:31:25,6:25:896:6:216:-9.96355,0,-71.628	0/1:431:276,155:276:9851:155:5572:-356.101,0,-756.122	0/1:400:234,166:234:8388:166:5964:-403.655,0,-634.089	0/1:1044:898,145:898:32137:145:5212:-143.84,0,-2575.63	0/1:449:267,182:267:9558:182:6548:-437.622,0,-724.761	0/1:336:195,141:195:6991:141:5068:-345.063,0,-528.001	0/1:264:183,81:183:6530:81:2906:-176.489,0,-508.185	0/1:732:467,265:467:16750:265:9508:-616.31,0,-1285.91	0/1:226:149,77:149:5330:77: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chr09	23935323	.	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chr09	23935329	.	CT	CC,TC	823618	PASS	AB=0.768662,0.228789;ABP=27054.9,27570.7;AC=98,90;AF=0.521277,0.478723;AN=188;AO=34229,9980;CIGAR=1M1X,2X;DP=44320;DPB=44321.5;DPRA=0,0;EPP=74321.7,21674.3;EPPR=22.5536;GTI=10;LEN=1,2;MEANALT=2.79787,2.79787;MQM=56.8345,42.9928;MQMR=60;NS=94;NUMALT=2;ODDS=14470.1;PAIRED=0,0;PAIREDR=0;PAO=0,3;PQA=0,108;PQR=0;PRO=0;QA=1194127,344538;QR=297;RO=9;RPL=34228,9980;RPP=74321.7,21674.3;RPPR=22.5536;RPR=1,0;RUN=1,1;SAF=34229,9980;SAP=74330.3,21674.3;SAR=0,0;SRF=9;SRP=22.5536;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:202:0,149,53:0:0:149,53:5142,1779:-557.734,-140.858,-96.0046,-417.209,0,-401.254	1/2:728:0,539,188:0:0:539,188:18847,6637:-2048.96,-528.813,-366.558,-1520.14,0,-1463.54	1/1:450:0,407,43:0:0:407,43:14157,1509:-1265.01,-122.519,0,-1144.19,-1.34695,-1131.24	1/2:685:0,528,155:0:0:528,155:18519,5340:-1921.29,-423.684,-264.741,-1497.69,0,-1451.03	1/2:360:0,301,58:0:0:301,58:10515,2010:-1007.34,-158.673,-68.0628,-848.651,0,-831.191	1/2:332:0,264,66:0:0:264,66:9247,2274:-928.59,-180.115,-100.643,-748.509,0,-728.641	1/2:707:2,591,113:2:61:591,113:20726,3875:-1983.81,-302.098,-129.075,-1677.48,0,-1648.35	1/2:841:0,683,157:0:0:683,157:23766,5421:-2357.18,-432.302,-226.698,-1924.98,0,-1877.72	1/2:488:0,424,62:0:0:424,62:14838,2148:-1372.3,-171.164,-43.5268,-1201.2,0,-1182.53	1/2:464:0,375,89:0:0:375,89:13129,3129:-1311.69,-247.305,-134.419,-1064.73,0,-1037.94	1/2:371:0,320,51:0:0:320,51:11009,1777:-1027.89,-140.413,-44.0836,-887.812,0,-872.459	1/2:372:0,307,63:0:0:307,63:10566,2192:-1028.02,-173.368,-80.9517,-854.713,0,-835.748	1/2:251:0,222,29:0:0:222,29:7733,1014:-707.295,-81.4384,-14.6097,-626.201,0,-617.471	1/2:356:0,307,49:0:0:307,49:10619,1719:-994.969,-135.304,-42.8878,-860.005,0,-845.254	1/2:238:0,205,33:0:0:205,33:7149,1153:-671.628,-91.4165,-29.7053,-580.553,0,-570.619	1/2:185:0,165,19:0:0:165,19:5651,670:-512.023,-53.558,-3.88802,-458.556,0,-452.837	1/2:350:0,244,104:0:0:244,104:8459,3635:-973.109,-288.271,-214.819,-684.903,0,-653.596	1/2:235:0,182,53:0:0:182,53:6295,1861:-658.71,-149.271,-94.4836,-509.784,0,-493.829	1/2:200:0,151,49:0:0:151,49:5243,1714:-561.778,-135.803,-90.3473,-426.317,0,-411.567	1/2:987:0,700,284:0:0:700,284:24450,9791:-2756.37,-773.096,-562.375,-1983.32,0,-1897.83	1/2:790:0,582,205:0:0:582,205:20249,6999:-2186.27,-553.104,-377.905,-1633.24,0,-1571.53	1/2:380:0,235,142:0:0:235,142:8307,4933:-1065.06,-388.71,-317.968,-676.451,0,-633.704	1/2:692:0,615,76:0:0:615,76:21474,2638:-1937.63,-210.019,-24.8854,-1727.6,0,-1704.72	1/2:636:0,446,189:0:0:446,189:15673,6508:-1790.17,-516.195,-381.936,-1273.97,0,-1217.07	1/2:342:0,242,99:0:0:242,99:8405,3413:-950.664,-269.331,-196.481,-681.368,0,-651.566	1/2:1658:0,1139,515:0:0:1139,515:39864,18043:-4636.02,-1419.79,-1076.91,-3216.33,0,-3061.3	1/2:1236:1,840,394:1:36:840,394:29318,13499:-3433.46,-1067.33,-817.403,-2363.53,0,-2247.86	1/2:179:0,134,45:0:0:134,45:4692,1590:-504.3,-125.198,-84.8596,-379.446,0,-365.9	1/2:1872:0,1441,424:0:0:1441,424:50545,14681:-5245.32,-1158.32,-724.54,-4087.03,0,-3959.39	1/2:619:0,488,131:0:0:488,131:17077,4596:-1753.03,-364.713,-217.81,-1388.66,0,-1349.23	1/2:755:0,592,160:0:0:592,160:20704,5505:-2118.81,-436.095,-257.885,-1682.77,0,-1634.6	1/2:13:0,9,4:0:0:9,4:307,144:-36.9566,-12.1095,-9.40023,-25.201,0,-23.9969	1/2:53:0,38,15:0:0:38,15:1319,532:-150.085,-43.3021,-31.863,-107.133,0,-102.618	1/2:63:0,21,42:0:0:21,42:744,1458:-179.144,-118.569,-112.247,-60.9268,0,-48.2836	1/2:38:0,25,13:0:0:25,13:865,447:-106.326,-36.3105,-28.7847,-70.3576,0,-66.4442	1/2:56:0,35,21:0:0:35,21:1226,717:-157.277,-57.5727,-47.0367,-100.045,0,-93.7236	1/2:822:0,677,144:0:0:677,144:23381,4987:-2290.69,-392.788,-188.99,-1898.01,0,-1854.66	1/2:758:2,591,159:2:56:591,159:20709,5465:-2111.57,-428.997,-255.525,-1678.83,0,-1635.4	1/2:417:0,353,63:0:0:353,63:12160,2157:-1152.47,-171.139,-64.8758,-981.419,0,-962.454	1/2:21:0,17,4:0:0:17,4:608,144:-61.3035,-11.8951,-6.77757,-49.7629,0,-48.5588	1/2:749:0,535,210:0:0:535,210:18702,7189:-2077.76,-569.792,-408.741,-1507.98,0,-1444.77	1/2:117:0,97,20:0:0:97,20:3352,711:-329.288,-56.9569,-27.757,-272.678,0,-266.658	1/2:786:0,623,160:0:0:623,160:21858,5582:-2214.56,-439.889,-252.348,-1774.77,0,-1726.6	1/2:388:0,324,64:0:0:324,64:11222,2232:-1085.26,-176.731,-79.1972,-908.87,0,-889.604	1/2:254:0,203,49:0:0:203,49:7048,1558:-693.224,-123.087,-61.9777,-570.174,0,-555.423	1/2:379:0,246,133:0:0:246,133:8584,4602:-1059.98,-362.466,-288.413,-697.859,0,-657.822	1/2:495:0,421,73:0:0:421,73:14678,2496:-1387,-198.514,-71.7802,-1188.62,0,-1166.65	1/2:767:0,652,115:0:0:652,115:22718,3971:-2157.4,-315.557,-119.285,-1842.19,0,-1807.57	1/2:472:0,404,64:0:0:404,64:14219,2219:-1326.28,-175.344,-53.7281,-1150.96,0,-1131.69	1/2:527:0,398,129:0:0:398,129:13985,4471:-1490.66,-352.672,-232.863,-1138.32,0,-1099.49	1/2:615:0,481,131:0:0:481,131:16873,4508:-1729.45,-357.087,-212.291,-1372.46,0,-1333.02	1/2:28:0,23,5:0:0:23,5:792,178:-78.7191,-14.6292,-7.7055,-64.4393,0,-62.9342	1/2:588:0,506,81:0:0:506,81:1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chr09	23935338	.	C	T	52232.9	PASS	AB=0.19818;ABP=30522.1;AC=80;AF=0.425532;AN=188;AO=8022;CIGAR=1X;DP=43924;DPB=43924;DPRA=10.7071;EPP=17422.6;EPPR=72056.8;GTI=40;LEN=1;MEANALT=1.6413;MQM=57.6065;MQMR=54.0096;NS=94;NUMALT=1;ODDS=2.22149;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=274434;QR=1169013;RO=33182;RPL=8022;RPP=17422.6;RPPR=72056.8;RPR=0;RUN=1;SAF=8022;SAP=17422.6;SAR=0;SRF=33182;SRP=72056.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:183:163,20:163:5646:20:674:-5.80854,0,-449.984	0/1:720:511,99:511:18052:99:3420:-123.091,0,-1427.95	0/1:449:289,94:289:10157:94:3202:-172.677,0,-794.595	0/1:689:515,83:515:18146:83:2805:-72.1853,0,-1442.3	0/1:346:188,100:188:6626:100:3441:-222.73,0,-505.154	0/1:331:208,90:208:7363:90:3072:-186.336,0,-569.041	0/1:709:635,74:635:22372:74:2462:-7.56126,0,-1787.48	0/1:839:543,211:543:19146:211:7293:-428.694,0,-1486.84	0/1:488:386,43:386:13642:43:1476:-3.61632,0,-1092.34	0/0:461:415,43:415:14693:43:1485:0,-4.37943,-1177.39	0/1:364:230,88:230:8116:88:3012:-175.095,0,-629.013	0/1:368:295,73:295:10320:73:2450:-109.828,0,-810.093	0/1:251:159,63:159:5623:63:2134:-124.948,0,-437.519	0/1:345:292,53:292:10298:53:1823:-60.4469,0,-815.177	0/1:236:184,52:184:6456:52:1765:-87.8507,0,-506.608	0/1:189:136,53:136:4785:53:1786:-103.924,0,-372.807	0/1:351:278,38:278:9802:38:1331:-24.5643,0,-779.185	0/1:233:167,53:167:5870:53:1781:-93.9655,0,-459.189	0/1:201:178,23:178:6302:23:788:-10.6528,0,-502.62	0/1:979:882,97:882:31046:97:3310:-3.15703,0,-2472.24	0/1:765:570,96:570:19910:96:3313:-97.4882,0,-1574.18	0/0:375:349,26:349:12362:26:902:0,-31.4836,-1017.52	0/0:698:547,53:547:19258:53:1811:0,-17.9037,-1561.27	0/1:650:542,100:542:19123:100:3430:-114.915,0,-1513.12	0/1:327:261,66:261:9213:66:2249:-103.566,0,-721.545	0/1:1635:1260,176:1260:44496:176:6072:-111.679,0,-3525.24	0/1:1221:853,205:853:30029:205:6957:-307.064,0,-2354.68	0/1:178:122,39:122:4326:39:1315:-69.5396,0,-335.26	0/1:1854:1297,363:1297:45880:363:12419:-616.572,0,-3589.17	0/1:621:495,122:495:17479:122:4239:-194.952,0,-1376.85	0/1:758:510,246:510:18012:246:8446:-530.965,0,-1381.71	0/1:14:8,6:8:288:6:208:-14.7339,0,-22.053	0/1:52:39,9:39:1383:9:320:-14.3407,0,-109.558	0/0:63:63,0:63:2200:0:0:0,-18.9649,-198.006	0/1:38:26,8:26:906:8:280:-14.9629,0,-71.0112	0/0:57:54,3:54:1928:3:93:0,-8.49085,-163.663	0/1:818:600,215:600:21058:215:7376:-417.191,0,-1636.75	0/1:748:519,229:519:18331:229:7900:-484.712,0,-1409.93	0/1:414:278,90:278:9757:90:3070:-165.105,0,-759.815	0/1:22:19,3:19:676:3:95:-2.24024,0,-54.1653	0/1:740:561,108:561:19718:108:3635:-125.539,0,-1553.96	0/1:119:91,28:91:3184:28:932:-48.3447,0,-249.66	0/1:779:614,164:614:21568:164:5676:-276.185,0,-1688.78	0/1:397:307,90:307:10858:90:3136:-162.675,0,-849.034	0/1:242:203,38:203:7057:38:1305:-44.7538,0,-559.181	0/1:377:319,58:319:11255:58:1946:-60.2377,0,-887.696	0/1:486:338,93:338:11929:93:3207:-158.682,0,-938.72	0/1:749:492,257:492:17410:257:8799:-564.604,0,-1331.74	0/1:472:369,48:369:13051:48:1641:-22.0687,0,-1043.08	0/1:520:407,112:407:14335:112:3785:-184.163,0,-1123.9	0/0:601:549,52:549:19345:52:1755:0,-23.1814,-1573.52	0/1:27:22,5:22:771:5:176:-8.05314,0,-61.3947	0/1:578:355,132:355:12646:132:4453:-253.955,0,-985.806	0/0:380:351,29:351:12444:29:1028:0,-21.5825,-1012.49	0/1:53:30,23:30:1067:23:793:-55.7228,0,-80.1619	0/1:639:485,153:485:16983:153:5167:-272.573,0,-1323.66	0/1:272:213,59:213:7520:59:2026:-100.216,0,-587.918	0/0:17:14,1:14:500:1:32:0,-1.64495,-41.3558	0/1:43:39,4:39:1366:4:144:-0.365606,0,-109.862	0/1:568:343,142:343:12048:142:4918:-295.957,0,-930.49	0/1:546:404,82:404:14274:82:2814:-106.677,0,-1126.07	0/0:26:25,0:25:879:0:0:0,-7.52575,-78.4102	0/1:791:583,208:583:20559:208:7202:-409.418,0,-1586.89	0/1:867:630,126:630:22256:126:4324:-161.102,0,-1761.8	0/1:402:307,50:307:10861:50:1755:-50.2984,0,-864.975	0/1:341:192,117:192:6743:117:3906:-258.3,0,-506.418	0/1:689:523,162:523:18449:162:5565:-292.824,0,-1438.7	0/1:274:222,48:222:7768:48:1644:-66.5843,0,-611.269	0/1:204:162,24:162:5717:24:856:-20.8319,0,-455.932	0/1:344:237,107:237:8348:107:3619:-222.27,0,-643.802	0/1:282:239,43:239:8356:43:1461:-46.7841,0,-659.163	0/0:159:134,9:134:4729:9:311:0,-15.0721,-391.931	0/0:679:641,38:641:22422:38:1272:0,-89.8426,-1888.11	0/1:117:84,26:84:2943:26:920:-49.5539,0,-230.578	0/0:1482:1226,98:1226:43164:98:3367:0,-95.9099,-3540.47	0/1:940:744,193:744:26268:193:6531:-305.289,0,-2063.77	0/1:826:568,196:568:20019:196:6726:-374.835,0,-1559.19	0/1:433:259,174:259:9157:174:5984:-408.116,0,-690.293	0/0:30:24,1:24:856:1:36:0,-4.28225,-73.7293	0/1:412:293,75:293:10329:75:2521:-115.968,0,-809.494	0/1:385:225,114:225:7851:114:3868:-245.699,0,-598.267	0/1:1026:804,221:804:28433:221:7532:-367.702,0,-2239.31	0/1:449:327,73:327:11494:73:2517:-105.829,0,-903.349	0/0:325:280,25:280:9926:25:875:0,-13.1849,-806.892	0/1:251:211,40:211:7332:40:1336:-44.9458,0,-579.277	0/1:718:554,163:554:19470:163:5640:-290.915,0,-1519.87	0/1:225:149,61:149:5224:61:2118:-127.066,0,-403.497	0/1:250:199,51:199:6924:51:1717:-79.421,0,-543.7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chr09	23935342	.	T	A	79645	PASS	AB=0.221584;ABP=29051.6;AC=90;AF=0.478723;AN=188;AO=9656;CIGAR=1X;DP=44325;DPB=44325;DPRA=0;EPP=20970.7;EPPR=75227.2;GTI=36;LEN=1;MEANALT=1.25532;MQM=59.8579;MQMR=51.9807;NS=94;NUMALT=1;ODDS=1.84955;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=342154;QR=1236733;RO=34642;RPL=9656;RPP=20970.7;RPPR=75227.2;RPR=0;RUN=1;SAF=9656;SAP=20970.7;SAR=0;SRF=34642;SRP=75227.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:202:173,29:173:6144:29:1040:-33.1055,0,-487.395	0/1:710:561,149:561:20071:149:5300:-263.406,0,-1565.82	0/1:452:373,79:373:13331:79:2815:-117.524,0,-1050.44	0/1:693:572,121:572:20440:121:4307:-179.185,0,-1608.45	0/0:357:332,25:332:11866:25:892:0,-26.868,-972.754	0/1:334:280,54:280:9992:54:1908:-71.082,0,-790.537	0/1:711:467,243:467:16691:243:8623:-561.975,0,-1273.25	0/1:851:646,205:646:23028:205:7252:-396.564,0,-1798.15	0/1:485:363,122:363:12973:122:4333:-244.145,0,-1010.5	0/1:462:333,128:333:11897:128:4559:-271.347,0,-917.764	0/1:373:317,54:317:11302:54:1910:-60.1668,0,-892.221	0/1:374:293,80:293:10466:80:2848:-143.962,0,-820.067	0/1:248:176,72:176:6278:72:2535:-153.74,0,-485.624	0/1:355:314,41:314:11171:41:1464:-25.1895,0,-889.88	0/1:237:174,62:174:6216:62:2219:-128.581,0,-483.832	0/1:188:133,55:133:4751:55:1943:-118.549,0,-369.665	0/1:345:276,68:276:9823:68:2420:-114.181,0,-770.014	0/1:232:181,51:181:6432:51:1812:-93.1518,0,-504.5	0/1:196:136,60:136:4851:60:2132:-133.147,0,-373.24	0/1:978:672,306:672:24051:306:10803:-677.778,0,-1838.26	0/1:791:618,173:618:21995:173:6101:-311.082,0,-1708.19	0/1:386:340,45:340:12106:45:1620:-29.8336,0,-957.27	0/1:692:510,182:510:18178:182:6457:-372.746,0,-1400.63	0/1:652:552,100:552:19731:100:3537:-122.269,0,-1562.79	0/1:334:277,57:277:9852:57:2019:-81.4321,0,-775.458	0/1:1659:1313,344:1313:46895:344:12150:-594.105,0,-3638.73	0/1:1245:1095,150:1095:39169:150:5300:-102.31,0,-3096.66	0/1:178:155,23:155:5548:23:824:-20.9,0,-437.723	0/1:1881:1458,422:1458:52213:422:14990:-781.676,0,-4060.57	0/1:617:454,163:454:16198:163:5748:-331.695,0,-1259.79	0/1:751:640,111:640:22871:111:3888:-123.951,0,-1817.17	0/1:14:9,5:9:311:5:180:-12.3376,0,-24.059	0/1:50:35,15:35:1248:15:540:-33.8841,0,-96.7823	0/1:58:9,49:9:324:49:1710:-136.722,0,-11.6982	0/1:38:28,10:28:1000:10:339:-19.3984,0,-78.1322	0/1:59:30,29:30:1080:29:1020:-74.3514,0,-78.2397	0/1:825:586,237:586:20941:237:8384:-506.529,0,-1619.16	0/1:765:648,117:648:23045:117:4123:-140.963,0,-1825.95	0/0:416:382,34:382:13635:34:1211:0,-15.9335,-1104.06	0/0:20:19,1:19:675:1:36:0,-2.42232,-57.0968	0/1:754:653,101:653:23262:101:3592:-96.512,0,-1833.67	0/1:118:94,24:94:3327:24:852:-41.4779,0,-262.681	0/1:782:605,175:605:21596:175:6200:-322.196,0,-1688.88	0/1:391:304,87:304:10865:87:3097:-161.247,0,-850.478	0/1:260:178,81:178:6310:81:2849:-178.407,0,-482.605	0/1:379:324,55:324:11503:55:1956:-62.225,0,-905.278	0/1:491:368,123:368:13132:123:4376:-246.21,0,-1022.54	0/1:767:665,101:665:23828:101:3575:-91.0108,0,-1896.98	0/1:470:316,152:316:11270:152:5403:-345.182,0,-860.841	0/1:530:387,143:387:13842:143:5046:-294.739,0,-1073.02	0/1:605:377,228:377:13513:228:8113:-548.061,0,-1022.27	0/1:28:17,11:17:604:11:396:-27.5539,0,-45.8149	0/1:583:475,108:475:16975:108:3807:-167.331,0,-1337.47	0/1:382:296,86:296:10580:86:3011:-156.225,0,-822.189	0/1:48:35,13:35:1256:13:460:-27.2859,0,-98.6624	0/1:650:433,216:433:15452:216:7687:-496.081,0,-1179.24	0/1:283:244,39:244:8687:39:1392:-40.3866,0,-688.15	0/1:17:13,4:13:468:4:136:-7.45803,0,-36.316	0/1:42:30,12:30:1080:12:428:-26.2155,0,-84.262	0/1:572:496,76:496:17640:76:2671:-68.4155,0,-1397.81	0/1:546:464,82:464:16622:82:2912:-97.951,0,-1311.62	0/1:27:19,8:19:684:8:284:-17.7755,0,-52.9249	0/1:824:719,105:719:25704:105:3716:-86.5926,0,-2033.05	0/1:856:582,274:582:20800:274:9700:-615.275,0,-1585.16	0/1:396:286,109:286:10200:109:3839:-226.449,0,-789.386	0/1:355:253,102:253:8999:102:3600:-217.334,0,-690.94	0/1:700:520,180:520:18608:180:6368:-362.435,0,-1443.5	0/1:268:207,61:207:7398:61:2172:-115.064,0,-580.305	0/1:203:147,56:147:5266:56:1956:-115.196,0,-407.782	0/1:351:254,97:254:9087:97:3454:-205.039,0,-707.943	0/1:287:256,31:256:9123:31:1096:-12.5534,0,-725.471	0/1:153:114,39:114:4067:39:1371:-77.6293,0,-312.261	0/1:702:496,206:496:17665:206:7319:-446.978,0,-1359.91	0/1:116:100,15:100:3544:15:536:-13.6629,0,-282.268	0/1:1494:1198,296:1198:42703:296:10490:-493.554,0,-3330.46	0/1:947:693,253:693:24807:253:8947:-520.102,0,-1925.83	0/1:826:684,142:684:24426:142:5000:-201.504,0,-1928.63	0/1:434:340,93:340:12187:93:3270:-163.788,0,-962.028	0/1:30:8,22:8:288:22:776:-61.1313,0,-16.7433	0/1:428:341,87:341:12202:87:3073:-147.949,0,-951.509	0/0:388:352,36:352:12564:36:1288:0,-0.57645,-1001.67	0/1:1023:691,331:691:24680:331:11779:-751.968,0,-1900.65	0/1:449:388,61:388:13823:61:2163:-59.7715,0,-1092.52	0/1:329:239,90:239:8540:90:3207:-189.813,0,-659.773	0/1:255:207,48:207:7363:48:1718:-78.1412,0,-579.81	0/1:719:598,121:598:21260:121:4316:-172.172,0,-1678.08	0/1:227:186,41:186:6603:41:1476:-64.8012,0,-520.899	0/1:252:211,40:211:7530:40:1414:-51.6368,0,-595.764	0/1:284:204,80:204:7266:80:2838:-170.165,0,-559.358	0/1:212:180,32:180:6460:32:1144:-39.4503,0,-510.082	0/1:640:567,73:567:20217:73:2604:-41.9442,0,-1600.93	0/1:274:241,32:241:8601:32:1128:-19.295,0,-681.115	0/1:550:352,198:352:12571:198:7001:-463.074,0,-947.241	0/1:414:305,109:305:10896:109:3860:-222.908,0,-845.456
chr09	23935346	.	G	A	136394	PASS	AB=0.283203;ABP=17862.1;AC=91;AF=0.484043;AN=188;AO=12409;CIGAR=1X;DP=44000;DPB=44000;DPRA=33.7834;EPP=26948.8;EPPR=68569.4;GTI=23;LEN=1;MEANALT=1.15054;MQM=42.2389;MQMR=58.2273;NS=94;NUMALT=1;ODDS=5.5591;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=443373;QR=1118667;RO=31576;RPL=12409;RPP=26948.8;RPPR=68569.4;RPR=0;RUN=1;SAF=12409;SAP=26948.8;SAR=0;SRF=31576;SRP=68569.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:196:148,48:148:5199:48:1720:-92.1062,0,-408.087	0/1:724:429,295:429:15253:295:10563:-708.056,0,-1152.26	0/1:451:344,107:344:12184:107:3840:-200.178,0,-958.369	0/1:692:445,246:445:15769:246:8759:-558.831,0,-1210.32	0/1:353:236,117:236:8324:117:4200:-257.509,0,-642.563	0/1:327:227,100:227:8037:100:3575:-213.857,0,-624.67	0/1:707:602,105:602:21367:105:3756:-115.971,0,-1705.5	0/1:831:593,238:593:21040:238:8497:-497.089,0,-1641.78	0/1:477:358,119:358:12645:119:4272:-231.968,0,-992.388	0/1:460:369,91:369:13070:91:3272:-147.246,0,-1034.04	0/1:370:271,99:271:9595:99:3543:-196.129,0,-751.77	0/1:361:299,62:299:10577:62:2223:-86.2953,0,-839.411	0/1:247:187,60:187:6677:60:2141:-113.795,0,-526.347	0/1:352:304,48:304:10768:48:1728:-44.4118,0,-860.128	0/1:235:203,32:203:7252:32:1140:-28.9127,0,-580.768	0/0:188:172,16:172:6109:16:576:0,-5.52532,-498.59	0/1:353:219,134:219:7788:134:4812:-316.97,0,-594.578	0/1:237:172,65:172:6121:65:2336:-134.507,0,-479.326	0/1:197:150,47:150:5335:47:1692:-89.0093,0,-420.751	0/1:983:705,278:705:24821:278:9935:-573.315,0,-1931.61	0/1:791:486,305:486:17132:305:10865:-708.952,0,-1301.15	0/1:381:238,143:238:8447:143:5088:-328.572,0,-645.297	0/1:700:527,173:527:18685:173:6138:-321.244,0,-1465.33	0/1:652:454,198:454:16076:198:7085:-426.274,0,-1249.21	0/1:333:236,97:236:8338:97:3463:-202.485,0,-648.143	0/1:1659:942,717:942:33346:717:25659:-1729.87,0,-2497.56	0/1:1227:675,552:675:23818:552:19710:-1354.17,0,-1772.91	0/1:175:114,61:114:4054:61:2192:-138.177,0,-311.103	0/1:1865:1252,613:1252:44423:613:21847:-1339.32,0,-3431.82	0/1:608:474,133:474:16856:133:4756:-234.425,0,-1333.02	0/1:748:588,160:588:20757:160:5719:-276.942,0,-1640.73	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.2255	0/1:52:42,10:42:1482:10:360:-16.2409,0,-118.012	0/1:60:54,6:54:1896:6:216:-1.41501,0,-152.818	0/1:40:28,12:28:987:12:428:-26.0517,0,-77.0927	0/1:56:45,11:45:1608:11:392:-18.1738,0,-128.036	0/1:820:681,139:681:24040:139:4992:-188.289,0,-1914.33	0/1:753:590,162:590:20786:162:5778:-279.381,0,-1640.36	0/1:412:304,108:304:10789:108:3860:-213.541,0,-843.494	0/1:20:16,4:16:568:4:144:-7.0786,0,-45.2885	0/1:745:470,275:470:16599:275:9830:-634.115,0,-1265.48	0/1:118:97,21:97:3424:21:752:-31.0572,0,-272.83	0/1:776:623,152:623:22043:152:5409:-238.569,0,-1744.98	0/1:389:325,64:325:11610:64:2296:-84.0559,0,-923.776	0/1:260:212,48:212:7449:48:1707:-71.4016,0,-589.997	0/1:364:231,133:231:8207:133:4760:-305.006,0,-627.344	0/1:484:363,121:363:12863:121:4340:-233.919,0,-1010.56	0/1:757:647,110:647:22863:110:3936:-116.074,0,-1823.83	0/1:475:355,119:355:12580:119:4241:-226.733,0,-988.599	0/1:526:397,128:397:14092:128:4568:-239.853,0,-1109.48	0/1:603:474,129:474:16843:129:4605:-222.575,0,-1333.32	0/1:27:24,3:24:845:3:108:-1.73101,0,-68.2251	0/1:577:406,171:406:14463:171:6144:-365.8,0,-1127.33	0/1:387:275,112:275:9776:112:4020:-233.661,0,-759.876	0/0:52:48,4:48:1704:4:144:0,-2.5699,-140.553	0/1:643:522,120:522:18447:120:4265:-179.203,0,-1462.49	0/1:278:206,72:206:7267:72:2575:-142.189,0,-568.867	0/1:17:6,11:6:212:11:396:-29.8385,0,-14.3069	0/1:43:36,7:36:1260:7:252:-9.47298,0,-100.752	0/1:563:381,182:381:13490:182:6483:-398.022,0,-1043.34	0/1:549:327,222:327:11582:222:7944:-530.598,0,-876.743	0/1:25:20,5:20:716:5:180:-8.6338,0,-56.9695	0/1:808:499,309:499:17730:309:11047:-719.729,0,-1351.04	0/1:860:590,268:590:20977:268:9581:-574.67,0,-1628.2	0/1:399:321,78:321:11421:78:2766:-122.065,0,-905.406	0/1:342:249,93:249:8763:93:3286:-181.62,0,-685.602	0/1:700:471,227:471:16697:227:8093:-499.681,0,-1291.09	0/1:265:235,30:235:8353:30:1068:-13.1293,0,-670.418	0/1:206:168,38:168:5943:38:1360:-57.0746,0,-471.632	0/1:349:277,72:277:9836:72:2570:-122.344,0,-779.723	0/1:282:222,60:222:7883:60:2132:-100.875,0,-621.378	0/1:154:104,50:104:3719:50:1796:-109.771,0,-287.48	0/1:687:439,247:439:15564:247:8851:-570.934,0,-1193.06	0/1:112:86,26:86:3063:26:931:-47.9209,0,-242.089	0/1:1480:915,564:915:32348:564:20132:-1312.75,0,-2456.61	0/1:945:716,228:716:25351:228:8146:-431.802,0,-1993.41	0/1:816:618,198:618:21869:198:7059:-375.274,0,-1717.38	0/1:429:364,65:364:12955:65:2305:-75.1434,0,-1036.29	0/1:30:24,6:24:860:6:216:-10.2646,0,-68.6905	0/1:421:268,153:268:9507:153:5475:-349.314,0,-728.341	0/1:380:218,162:218:7728:162:5782:-393.997,0,-580.76	0/1:1008:862,146:862:30620:146:5231:-156.413,0,-2450.74	0/1:446:265,181:265:9419:181:6484:-433.18,0,-713.167	0/1:324:228,96:228:8094:96:3424:-203.267,0,-628.969	0/1:258:221,36:221:7718:36:1277:-34.0288,0,-614.603	0/1:711:543,168:543:19235:168:5975:-311.168,0,-1511.69	0/1:223:168,55:168:5977:55:1980:-107.395,0,-4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chr10	11547	.	TAT	AAT,AAC	189776	PASS	AB=0.757645,0.241665;ABP=2510.55,2524;AC=147,41;AF=0.781915,0.218085;AN=188;AO=7834,1111;CIGAR=1X2M,1X1M1X;DP=8956;DPB=8956;DPRA=0,1.45425;EPP=17014.3,2415.52;EPPR=5.18177;GTI=10;LEN=1,3;MEANALT=1.64894,2.09615;MQM=55.686,44.0063;MQMR=60;NS=94;NUMALT=2;ODDS=2075.91;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=279855,38908;QR=28;RO=1;RPL=0,0;RPP=17014.3,2415.52;RPPR=5.18177;RPR=7834,1111;RUN=1,1;SAF=7834,1111;SAP=17014.3,2415.52;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14,0:0:0:14,0:498,0:-44.8503,-4.21442,0,-44.8503,-4.21442,-44.8503	1/2:108:0,83,25:0:0:83,25:2968,857:-309.975,-68.2369,-43.2514,-242.078,0,-234.553	1/2:125:0,95,30:0:0:95,30:3404,1063:-362.247,-84.9774,-56.3795,-277.62,0,-268.589	1/2:213:0,180,33:0:0:180,33:6456,1167:-619.428,-93.7399,-39.5545,-526.038,0,-516.104	1/2:57:0,48,9:0:0:48,9:1724,309:-165.785,-25.1794,-10.7299,-140.949,0,-138.24	1/2:47:0,31,16:0:0:31,16:1104,560:-134.76,-44.9428,-35.6109,-90.1648,0,-85.3483	1/1:162:0,159,1:0:0:159,1:5655,36:-507.776,-47.8638,0,-504.894,-44.9812,-504.593	1/2:133:0,111,22:0:0:111,22:3988,755:-385.402,-60.3075,-26.8932,-325.435,0,-318.812	1/1:92:0,84,8:0:0:84,8:3004,284:-269.572,-25.2865,0,-247.507,-2.88014,-245.099	1/1:47:0,47,0:0:0:47,0:1688,0:-152.034,-14.1484,0,-152.034,-14.1484,-152.034	1/2:125:0,91,34:0:0:91,34:3247,1189:-359.509,-95.3647,-67.971,-264.492,0,-254.257	1/1:62:0,62,0:0:0:62,0:2221,0:-199.799,-18.6639,0,-199.799,-18.6639,-199.799	1/2:76:0,46,30:0:0:46,30:1629,1028:-214.407,-82.0093,-68.1619,-132.74,0,-123.709	1/1:129:0,128,0:0:0:128,0:4582,0:-411.687,-38.5318,0,-411.687,-38.5318,-411.687	1/1:38:0,38,0:0:0:38,0:1360,0:-122.564,-11.4391,0,-122.564,-11.4391,-122.564	1/1:46:0,46,0:0:0:46,0:1656,0:-149.206,-13.8474,0,-149.206,-13.8474,-149.206	1/2:119:0,78,41:0:0:78,41:2772,1442:-339.111,-113.685,-90.2047,-225.771,0,-213.429	1/2:64:0,38,26:0:0:38,26:1364,924:-185.151,-73.9963,-62.5572,-111.507,0,-103.68	1/1:41:0,41,0:0:0:41,0:1476,0:-132.872,-12.3422,0,-132.872,-12.3422,-132.872	1/1:207:0,207,0:0:0:207,0:7379,0:-663.163,-62.3132,0,-663.163,-62.3132,-663.163	1/2:111:0,99,12:0:0:99,12:3525,417:-320.243,-33.8596,-4.05758,-286.728,0,-283.116	1/1:79:0,79,0:0:0:79,0:2809,0:-252.567,-23.7814,0,-252.567,-23.7814,-252.567	1/2:63:0,49,13:0:0:49,13:1741,457:-178.331,-36.6307,-21.8802,-141.764,0,-137.851	1/1:74:0,72,1:0:0:72,1:2573,34:-231.389,-21.6742,0,-228.654,-18.9054,-228.353	1/1:81:0,80,0:0:0:80,0:2861,0:-257.112,-24.0824,0,-257.112,-24.0824,-257.112	1/1:298:0,276,22:0:0:276,22:9892,774:-888.541,-83.0843,0,-826.601,-20.7967,-819.978	1/2:209:0,174,35:0:0:174,35:6193,1238:-603.447,-99.7113,-47.3321,-504.086,0,-493.55	1/2:34:0,20,14:0:0:20,14:720,491:-98.4898,-39.8574,-33.8368,-58.9845,0,-54.7701	1/2:253:0,220,33:0:0:220,33:7845,1177:-732.063,-93.6597,-27.4331,-638.752,0,-628.818	1/1:120:0,118,2:0:0:118,2:4197,67:-377.255,-35.5215,0,-371.877,-29.8107,-371.275	1/1:98:0,98,0:0:0:98,0:3493,0:-314.167,-29.5009,0,-314.167,-29.5009,-314.167	1/2:8:0,5,3:0:0:5,3:176,106:-23.2072,-8.8882,-7.38305,-14.6694,0,-13.7663	1/2:27:0,19,8:0:0:19,8:665,288:-77.0797,-23.008,-17.2885,-54.4203,0,-52.012	1/1:5:0,5,0:0:0:5,0:180,0:-16.5409,-1.50515,0,-16.5409,-1.50515,-16.5409	1/2:3:0,2,1:0:0:2,1:57,36:-7.69412,-3.21998,-2.61792,-4.80371,0,-4.50268	1/1:17:0,17,0:0:0:17,0:608,0:-54.9681,-5.11751,0,-54.9681,-5.11751,-54.9681	1/1:158:0,158,0:0:0:158,0:5680,0:-510.919,-47.5627,0,-510.919,-47.5627,-510.919	1/1:149:0,149,0:0:0:149,0:5339,0:-480.104,-44.8535,0,-480.104,-44.8535,-480.104	1/2:110:0,81,29:0:0:81,29:2912,1024:-318.43,-81.2652,-56.8818,-237.513,0,-228.783	1/1:2:0,2,0:0:0:2,0:72,0:-6.82968,-0.60206,0,-6.82968,-0.60206,-6.82968	1/1:128:0,116,12:0:0:116,12:4145,420:-372.171,-34.9195,0,-338.373,-0.774592,-334.761	1/1:36:0,36,0:0:0:36,0:1288,0:-116.151,-10.8371,0,-116.151,-10.8371,-116.151	1/1:81:0,81,0:0:0:81,0:2901,0:-261.087,-24.3834,0,-261.087,-24.3834,-261.087	1/1:79:0,79,0:0:0:79,0:2828,0:-254.288,-23.7814,0,-254.288,-23.7814,-254.288	1/1:44:0,44,0:0:0:44,0:1569,0:-141.315,-13.2453,0,-141.315,-13.2453,-141.315	1/1:68:0,68,0:0:0:68,0:2402,0:-215.947,-20.47,0,-215.947,-20.47,-215.947	1/2:78:0,57,21:0:0:57,21:2040,721:-223.287,-57.1755,-40.0168,-166.452,0,-160.13	1/1:182:0,182,0:0:0:182,0:6512,0:-584.721,-54.7875,0,-584.721,-54.7875,-584.721	1/1:126:0,116,10:0:0:116,10:4134,356:-371.15,-34.9195,0,-342.624,-6.04236,-339.613	1/1:163:0,163,0:0:0:163,0:5844,0:-525.269,-49.0679,0,-525.269,-49.0679,-525.269	1/1:95:0,94,0:0:0:94,0:3364,0:-302.301,-28.2968,0,-302.301,-28.2968,-302.301	1/1:15:0,15,0:0:0:15,0:540,0:-48.8918,-4.51545,0,-48.8918,-4.51545,-48.8918	1/2:169:0,141,28:0:0:141,28:5035,966:-486.488,-77.1932,-34.748,-409.636,0,-401.207	1/1:67:0,67,0:0:0:67,0:2392,0:-215.413,-20.169,0,-215.413,-20.169,-215.413	1/1:9:0,9,0:0:0:9,0:324,0:-29.4846,-2.70927,0,-29.4846,-2.70927,-29.4846	1/1:70:0,70,0:0:0:70,0:2470,0:-222.398,-21.0721,0,-222.398,-21.0721,-222.398	1/1:59:0,59,0:0:0:59,0:2116,0:-190.448,-17.7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chr10	11575	.	C	G	163203	PASS	AB=0.758043;ABP=2555.88;AC=146;AF=0.776596;AN=188;AO=7706;CIGAR=1X;DP=8824;DPB=8824;DPRA=0;EPP=16589;EPPR=2266.04;GTI=13;LEN=1;MEANALT=1.05319;MQM=55.6758;MQMR=44.1509;NS=94;NUMALT=1;ODDS=3.9077;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=274810;QR=39659;RO=1113;RPL=7689;RPP=16589;RPPR=2266.04;RPR=17;RUN=1;SAF=7706;SAP=16736.4;SAR=0;SRF=1113;SRP=2419.86;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:468:-42.0548,-3.91339,0	0/1:106:24,81:24:860:81:2904:-229.351,0,-43.7396	0/1:123:30,93:30:1063:93:3301:-259.936,0,-56.9786	0/1:212:34,178:34:1211:178:6349:-506.892,0,-43.7558	0/1:56:10,46:10:345:46:1626:-129.729,0,-14.2586	0/1:46:16,30:16:576:30:1076:-83.132,0,-37.2209	1/1:161:1,160:1:36:160:5685:-507.387,-44.9297,0	0/1:127:19,108:19:680:108:3853:-308.382,0,-21.9983	1/1:89:8,81:8:288:81:2873:-233.042,-1.6428,0	1/1:47:0,47:0:0:47:1683:-151.673,-14.1484,0	0/1:125:35,90:35:1252:90:3201:-250.332,0,-73.5097	1/1:62:0,62:0:0:62:2213:-199.056,-18.6639,0	0/1:74:30,44:30:1076:44:1568:-118.828,0,-72.8459	1/1:128:0,128:0:0:128:4549:-409.067,-38.5318,0	1/1:37:0,37:0:0:37:1320:-118.977,-11.1381,0	1/1:43:0,43:0:0:43:1544:-139.136,-12.9443,0	0/1:117:40,77:40:1440:77:2749:-211.852,0,-90.7411	0/1:62:25,37:25:896:37:1332:-101.438,0,-60.6458	1/1:39:0,39:0:0:39:1379:-124.166,-11.7402,0	1/1:202:0,202:0:0:202:7241:-650.64,-60.8081,0	0/1:110:12,98:12:423:98:3503:-281.817,0,-4.88544	1/1:77:0,77:0:0:77:2756:-247.809,-23.1793,0	0/1:62:14,48:14:491:48:1724:-136.602,0,-25.1496	1/1:74:1,72:1:36:72:2564:-226.597,-18.7744,0	1/1:78:0,78:0:0:78:2787:-250.857,-23.4803,0	1/1:296:22,274:22:779:274:9796:-810.806,-19.8154,0	0/1:210:36,174:36:1283:174:6214:-494.973,0,-50.4176	0/1:32:14,18:14:504:18:648:-49.0025,0,-35.5615	0/1:249:33,216:33:1184:216:7711:-617.739,0,-29.2036	1/1:117:2,115:2:72:115:4103:-362.338,-28.4591,0	1/1:97:0,97:0:0:97:3455:-309.392,-29.1999,0	0/1:9:3,6:3:108:6:216:-17.0679,0,-7.25486	0/1:27:8,19:8:280:19:669:-52.3735,0,-16.823	1/1:5:0,5:0:0:5:180:-16.5409,-1.50515,0	0/1:2:1,1:1:36:1:36:-2.99362,0,-2.91895	1/1:16:0,16:0:0:16:568:-51.3738,-4.81648,0	1/1:158:0,158:0:0:158:5626:-506.063,-47.5627,0	1/1:144:0,143:0:0:143:5116:-459.591,-43.0473,0	0/1:110:30,80:30:1076:80:2791:-218.041,0,-61.4099	1/1:2:0,2:0:0:2:72:-6.82968,-0.60206,0	0/1:128:13,115:13:456:115:4115:-331.363,0,-2.44028	1/1:37:0,37:0:0:37:1313:-118.397,-11.1381,0	1/1:79:0,79:0:0:79:2827:-254.435,-23.7814,0	1/1:78:0,78:0:0:78:2791:-250.956,-23.4803,0	1/1:44:0,44:0:0:44:1558:-140.323,-13.2453,0	1/1:67:0,67:0:0:67:2387:-214.6,-20.169,0	0/1:78:21,57:21:719:57:2032:-159.412,0,-39.789	1/1:178:0,178:0:0:178:6319:-567.601,-53.5833,0	1/1:127:11,116:11:381:116:4156:-339.499,-4.24768,0	1/1:160:0,160:0:0:160:5732:-515.206,-48.1648,0	1/1:96:0,96:0:0:96:3413:-307.015,-28.8989,0	1/1:15:0,15:0:0:15:540:-48.8918,-4.51545,0	0/1:168:28,140:28:1000:140:4982:-396.701,0,-37.8821	1/1:68:0,68:0:0:68:2404:-216.494,-20.47,0	1/1:9:0,9:0:0:9:315:-28.668,-2.70927,0	1/1:70:0,70:0:0:70:2471:-222.495,-21.0721,0	1/1:59:0,59:0:0:59:2120:-190.838,-17.7608,0	0/1:6:2,4:2:68:4:139:-11.0355,0,-4.56791	1/1:15:0,15:0:0:15:529:-47.9177,-4.51545,0	0/1:99:19,80:19:667:80:2868:-228.251,0,-29.8033	0/1:230:83,147:83:2984:147:5254:-403.087,0,-193.391	1/1:5:0,5:0:0:5:180:-16.5374,-1.50515,0	1/1:100:0,100:0:0:100:3592:-323.016,-30.103,0	0/1:229:31,198:31:1097:198:7062:-565.605,0,-27.8731	0/1:98:14,84:14:504:84:2999:-240.378,0,-15.6594	0/1:53:9,44:9:324:44:1563:-124.885,0,-12.4014	1/1:110:0,110:0:0:110:3938:-354.371,-33.1133,0	1/1:95:0,95:0:0:95:3380:-304.017,-28.5979,0	0/1:64:27,37:27:963:37:1324:-100.076,0,-66.7155	1/1:63:0,63:0:0:63:2260:-202.138,-18.9649,0	1/1:105:0,105:0:0:105:3736:-335.88,-31.6082,0	0/1:24:3,21:3:108:21:746:-60.1997,0,-2.67642	1/1:147:0,147:0:0:147:5267:-473.718,-44.2514,0	0/1:61:7,54:7:252:54:1924:-154.763,0,-4.17162	0/1:247:63,184:63:2232:184:6548:-514.44,0,-123.422	1/1:85:0,85:0:0:85:3034:-273.097,-25.5876,0	0/1:129:25,104:25:896:104:3709:-294.492,0,-40.4943	1/1:111:1,110:1:36:110:3918:-348.626,-29.8933,0	1/1:8:0,8:0:0:8:288:-26.2493,-2.40824,0	0/1:57:10,47:10:347:47:1680:-134.077,0,-14.0715	0/1:79:30,49:30:1072:49:1760:-134.733,0,-70.2203	1/1:168:0,168:0:0:168:5986:-538.385,-50.573,0	0/1:153:47,106:47:1659:106:3780:-293.963,0,-101.205	0/1:79:22,57:22:788:57:2048:-160.621,0,-46.3222	1/1:52:0,52:0:0:52:1838:-165.49,-15.6536,0	1/1:141:1,140:1:36:140:5028:-448.67,-38.9091,0	0/1:56:16,40:16:576:40:1423:-111.167,0,-33.5647	1/1:82:0,82:0:0:82:2884:-259.572,-24.6845,0	0/1:90:27,62:27:972:62:2186:-169.482,0,-58.8369	0/1:76:21,55:21:732:55:1934:-151.288,0,-40.0646	0/1:258:92,166:92:3291:166:5914:-454.218,0,-212.823	0/1:93:41,51:41:1468:51:1810:-134.552,0,-102.273	1/1:87:0,87:0:0:87:3105:-279.417,-26.1896,0	1/1:64:1,63:1:36:63:2252:-199.296,-15.7174,0
chr10	11583	.	C	T	40019.6	PASS	AB=0.512132;ABP=8.96425;AC=41;AF=0.218085;AN=188;AO=2397;CIGAR=1X;DP=8831;DPB=8831;DPRA=1.52699;EPP=5208.03;EPPR=13959.1;GTI=3;LEN=1;MEANALT=1.04444;MQM=53.7689;MQMR=54.4363;NS=94;NUMALT=1;ODDS=0.528194;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85490;QR=226642;RO=6427;RPL=2397;RPP=5208.03;RPPR=13959.1;RPR=0;RUN=1;SAF=2397;SAP=5208.03;SAR=0;SRF=6427;SRP=13959.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.2096	0/0:106:106,0:106:3751:0:0:0,-31.9092,-335.92	0/0:122:122,0:122:4288:0:0:0,-36.7257,-383.857	0/1:211:92,118:92:3291:118:4215:-315.378,0,-231.034	0/0:56:56,0:56:1978:0:0:0,-16.8577,-177.997	0/0:46:46,0:46:1623:0:0:0,-13.8474,-145.269	0/1:163:49,114:49:1752:114:4081:-317.542,0,-108.741	0/0:133:133,0:133:4701:0:0:0,-40.037,-421.554	0/1:89:33,56:33:1125:56:2008:-153.794,0,-73.4469	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.069	0/1:121:76,45:76:2675:45:1601:-107.549,0,-202.685	0/0:61:61,0:61:2131:0:0:0,-18.3628,-191.715	0/1:72:50,22:50:1757:22:784:-49.0203,0,-134.86	0/0:126:126,0:126:4411:0:0:0,-37.9298,-396.41	0/1:38:23,15:23:815:15:540:-37.428,0,-62.164	0/0:46:46,0:46:1596:0:0:0,-13.8474,-143.807	0/0:115:115,0:115:4046:0:0:0,-34.6184,-360.11	0/0:63:63,0:63:2208:0:0:0,-18.9649,-197.38	0/1:40:22,18:22:756:18:628:-44.712,0,-56.1679	0/1:206:63,143:63:2251:143:5053:-392.105,0,-140.538	0/1:112:47,65:47:1664:65:2327:-174.671,0,-115.134	0/0:79:79,0:79:2799:0:0:0,-23.7814,-251.693	0/0:61:60,1:60:2127:1:36:0,-14.7697,-187.232	0/0:74:72,2:72:2546:2:72:0,-15.4465,-221.702	0/1:81:42,39:42:1500:39:1400:-101.785,0,-110.773	0/1:298:130,168:130:4573:168:5989:-448.116,0,-320.732	0/1:208:105,103:105:3747:103:3680:-268.164,0,-272.823	0/0:33:33,0:33:1143:0:0:0,-9.93399,-102.603	0/1:250:129,121:129:4570:121:4315:-312.657,0,-332.958	0/0:109:107,2:107:3786:2:72:0,-25.9826,-333.789	0/0:98:98,0:98:3477:0:0:0,-29.5009,-310.514	0/1:9:7,2:7:248:2:72:-4.11742,0,-19.843	0/1:25:18,7:18:636:7:252:-15.4795,0,-49.2302	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1753	0/0:3:3,0:3:95:0:0:0,-0.90309,-8.81189	0/1:16:4,12:4:144:12:432:-34.3309,0,-8.48753	0/0:155:154,0:154:5407:0:0:0,-46.3586,-486.043	0/0:149:148,0:148:5247:0:0:0,-44.5524,-471.517	0/0:108:108,0:108:3767:0:0:0,-32.5112,-336.618	1/1:2:0,2:0:0:2:72:-6.82968,-0.60206,0	0/1:127:70,57:70:2504:57:2043:-145.459,0,-186.835	0/1:37:20,17:20:677:17:604:-43.4994,0,-50.0889	0/0:80:80,0:80:2854:0:0:0,-24.0824,-256.864	0/0:77:77,0:77:2724:0:0:0,-23.1793,-244.943	0/0:43:43,0:43:1512:0:0:0,-12.9443,-136.209	0/1:66:20,46:20:707:46:1643:-127.933,0,-43.9542	0/0:74:74,0:74:2600:0:0:0,-22.2762,-232.185	0/1:178:65,113:65:2328:113:4052:-310.613,0,-155.577	0/1:123:53,70:53:1881:70:2488:-186.622,0,-131.899	0/1:163:65,98:65:2298:98:3507:-266.251,0,-157.733	0/0:91:91,0:91:3239:0:0:0,-27.3937,-291.428	0/1:15:8,7:8:284:7:252:-18.4809,0,-21.3764	0/1:164:78,86:78:2738:86:3084:-227.732,0,-195.028	0/0:67:67,0:67:2385:0:0:0,-20.169,-214.766	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4846	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.271	0/1:58:12,46:12:428:46:1651:-131.187,0,-21.3814	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.654	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.7752	0/0:101:101,0:101:3565:0:0:0,-30.404,-320.005	0/1:230:156,74:156:5434:74:2656:-169.348,0,-414.525	0/1:5:4,1:4:135:1:36:-2.08408,0,-10.9724	0/0:102:102,0:102:3605:0:0:0,-30.7051,-324.217	0/1:234:108,126:108:3835:126:4436:-328.045,0,-272.908	0/1:99:55,44:55:1957:44:1572:-111.809,0,-145.979	0/0:54:54,0:54:1908:0:0:0,-16.2556,-170.77	0/0:112:108,3:108:3848:3:108:0,-23.7164,-336.217	0/1:97:18,79:18:648:79:2828:-225.201,0,-29.2659	0/0:63:63,0:63:2209:0:0:0,-18.9649,-198.131	0/1:64:30,34:30:1048:34:1213:-90.0138,0,-74.0223	0/0:106:106,0:106:3739:0:0:0,-31.9092,-335.999	0/0:23:23,0:23:802:0:0:0,-6.92369,-72.2926	0/0:147:147,0:147:5189:0:0:0,-44.2514,-466.72	0/1:62:25,37:25:875:37:1313:-99.5443,0,-59.9394	0/1:246:142,104:142:4992:104:3728:-261.262,0,-371.844	0/0:89:89,0:89:3141:0:0:0,-26.7917,-282.704	0/0:132:132,0:132:4692:0:0:0,-39.736,-418.982	0/1:112:48,64:48:1711:64:2295:-172.539,0,-120.381	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8866	0/0:56:55,0:55:1955:0:0:0,-16.5566,-175.13	0/0:79:79,0:79:2800:0:0:0,-23.7814,-249.503	0/0:165:163,0:163:5786:0:0:0,-49.0679,-520.07	0/1:155:98,57:98:3459:57:2018:-134.935,0,-262.455	0/0:79:79,0:79:2754:0:0:0,-23.7814,-246.953	0/0:53:53,0:53:1860:0:0:0,-15.9546,-167.476	0/0:140:138,2:138:4850:2:72:0,-35.3172,-429.347	0/1:56:33,23:33:1148:23:828:-57.7814,0,-85.7888	0/0:82:82,0:82:2862:0:0:0,-24.6845,-257.552	0/0:89:89,0:89:3085:0:0:0,-26.7917,-275.962	0/1:74:47,27:47:1608:27:956:-63.9096,0,-119.872	0/1:259:170,89:170:5913:89:3152:-205.654,0,-449.505	0/1:94:56,38:56:1962:38:1326:-91.1435,0,-145.996	0/0:87:87,0:87:3080:0:0:0,-26.1896,-277.19	0/0:65:65,0:65:2255:0:0:0,-19.5669,-203.075
chr10	14188	.	G	A	31092.6	PASS	AB=0.27692;ABP=4370.47;AC=53;AF=0.281915;AN=188;AO=2805;CIGAR=1X;DP=18697;DPB=18697;DPRA=1.08415;EPP=6076.63;EPPR=34486;GTI=8;LEN=1;MEANALT=1.06667;MQM=59.9783;MQMR=59.9906;NS=94;NUMALT=1;ODDS=2.45661;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100296;QR=567066;RO=15888;RPL=0;RPP=6093.99;RPPR=34503.4;RPR=2805;RUN=1;SAF=2803;SAP=6076.63;SAR=2;SRF=15886;SRP=34486;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:32,17:32:1133:17:608:-40.3016,0,-87.5262	0/0:561:560,1:560:19988:1:36:0,-165.28,-1794.84	0/1:217:133,83:133:4737:83:2980:-203.05,0,-361.104	0/1:257:183,74:183:6496:74:2630:-159.58,0,-507.359	0/1:123:72,51:72:2569:51:1824:-127.414,0,-194.432	0/1:129:87,42:87:3108:42:1496:-96.1017,0,-241.115	0/1:495:405,90:405:14453:90:3221:-140.831,0,-1150.65	0/1:370:288,82:288:10224:82:2924:-152.012,0,-808.702	0/1:194:146,48:146:5164:48:1697:-94.6143,0,-406.501	0/1:263:203,60:203:7243:60:2133:-113.066,0,-572.75	0/1:113:72,41:72:2584:41:1476:-99.1198,0,-198.792	0/1:139:103,36:103:3685:36:1288:-74.3804,0,-290.008	0/0:165:165,0:165:5882:0:0:0,-49.6699,-529.49	0/0:131:131,0:131:4692:0:0:0,-39.4349,-422.44	0/0:143:143,0:143:5131:0:0:0,-43.0473,-461.93	0/0:127:127,0:127:4537:0:0:0,-38.2308,-408.496	0/1:162:130,32:130:4645:32:1152:-55.2187,0,-369.445	0/1:122:90,32:90:3224:32:1152:-67.2645,0,-253.656	0/1:93:61,32:61:2177:32:1152:-75.9944,0,-168.199	0/1:448:347,100:347:12384:100:3592:-188.565,0,-979.475	0/1:314:252,62:252:8982:62:2216:-105.181,0,-713.839	0/1:119:71,48:71:2533:48:1703:-117.733,0,-192.397	0/1:99:80,19:80:2861:19:675:-31.2756,0,-227.924	0/1:206:140,66:140:5012:66:2368:-151.366,0,-389.212	0/1:205:140,65:140:4997:65:2336:-148.788,0,-388.166	0/0:591:591,0:591:21048:0:0:0,-177.909,-1893.8	0/0:421:420,1:420:14971:1:36:0,-123.135,-1343.52	0/1:70:43,27:43:1539:27:957:-65.3718,0,-117.73	0/1:694:501,193:501:17879:193:6915:-413.499,0,-1399.77	0/0:420:420,0:420:15027:0:0:0,-126.433,-1352.15	0/0:170:170,0:170:6093:0:0:0,-51.1751,-548.469	0/0:18:18,0:18:625:0:0:0,-5.41854,-56.5725	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:438:438,0:438:15696:0:0:0,-131.851,-1412.33	0/1:298:201,97:201:7171:97:3452:-221.174,0,-555.737	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.892	0/1:11:9,2:9:320:2:68:-3.14638,0,-25.831	0/1:299:207,92:207:7428:92:3308:-207.93,0,-578.555	0/1:50:29,21:29:1044:21:752:-52.9548,0,-79.2233	0/1:397:283,113:283:10117:113:4041:-244.427,0,-791.014	0/1:124:85,38:85:3003:38:1356:-84.954,0,-233.112	0/0:134:134,0:134:4796:0:0:0,-40.338,-431.796	0/0:142:142,0:142:5021:0:0:0,-42.7463,-452.034	0/0:252:252,0:252:8993:0:0:0,-75.8596,-809.352	0/1:179:102,77:102:3649:77:2760:-194.757,0,-274.728	0/0:387:387,0:387:13767:0:0:0,-116.499,-1238.76	0/1:330:247,83:247:8864:83:2957:-167.023,0,-698.402	0/0:313:313,0:313:11201:0:0:0,-94.2224,-1007.98	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/1:287:200,87:200:7172:87:3124:-194.985,0,-559.139	0/1:106:83,23:83:2957:23:820:-42.2133,0,-234.408	0/1:42:34,8:34:1211:8:288:-13.6241,0,-96.6523	0/0:268:268,0:268:9555:0:0:0,-80.676,-859.906	0/1:37:20,17:20:720:17:593:-42.5566,0,-53.9907	0/1:14:12,2:12:413:2:72:-2.6223,0,-33.2834	0/1:49:25,24:25:900:24:845:-61.6166,0,-66.5705	0/0:127:127,0:127:4525:0:0:0,-38.2308,-407.418	0/1:206:149,57:149:5348:57:2018:-119.878,0,-419.439	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:218:149,69:149:5310:69:2453:-155.399,0,-412.409	0/0:362:362,0:362:12946:0:0:0,-108.973,-1164.95	0/0:226:226,0:226:8040:0:0:0,-68.0328,-723.619	0/0:149:149,0:149:5344:0:0:0,-44.8535,-481.092	0/1:297:233,64:233:8266:64:2304:-118.215,0,-654.525	0/0:169:168,1:168:5964:1:36:0,-47.2758,-533.267	0/1:88:69,19:69:2472:19:684:-35.3997,0,-196.243	0/0:233:232,1:232:8290:1:36:0,-66.5417,-742.509	0/0:139:139,0:139:4966:0:0:0,-41.8432,-447.085	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/1:361:298,63:298:10610:63:2241:-93.2802,0,-846.145	0/0:175:175,0:175:6264:0:0:0,-52.6802,-563.853	0/0:447:446,1:446:15873:1:36:0,-130.962,-1424.66	0/1:315:237,78:237:8448:78:2800:-157.415,0,-665.495	0/0:296:296,0:296:10540:0:0:0,-89.1049,-948.515	0/0:321:321,0:321:11482:0:0:0,-96.6306,-1033.25	0/1:24:18,6:18:648:6:216:-12.5658,0,-51.4272	0/1:152:91,61:91:3257:61:2177:-150.438,0,-247.592	0/0:142:141,1:141:5038:1:36:0,-39.148,-449.965	0/1:497:376,121:376:13385:121:4321:-239.453,0,-1054.83	0/0:169:169,0:169:6049:0:0:0,-50.8741,-544.512	0/1:97:66,31:66:2342:31:1116:-71.5518,0,-181.836	0/0:108:108,0:108:3849:0:0:0,-32.5112,-346.606	0/1:255:194,61:194:6881:61:2192:-120.783,0,-542.595	0/0:85:85,0:85:3041:0:0:0,-25.5875,-273.918	0/1:113:82,31:82:2935:31:1102:-65.4738,0,-230.367	0/0:135:135,0:135:4852:0:0:0,-40.639,-436.832	0/1:70:44,26:44:1567:26:936:-63.4589,0,-120.249	0/1:146:97,49:97:3480:49:1745:-113.382,0,-269.46	0/1:112:50,62:50:1784:62:2232:-167.428,0,-127.127	0/0:204:204,0:204:7271:0:0:0,-61.4101,-654.441	0/0:202:201,1:201:7209:1:36:0,-57.2098,-645.262
chr10	14244	.	C	A	107700	PASS	AB=0.41992;ABP=906.205;AC=93;AF=0.494681;AN=188;AO=6817;CIGAR=1X;DP=16253;DPB=16253;DPRA=34.9419;EPP=14797.3;EPPR=20447.4;GTI=7;LEN=1;MEANALT=1.05376;MQM=59.9532;MQMR=59.9926;NS=94;NUMALT=1;ODDS=4.75501;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243688;QR=336889;RO=9431;RPL=2;RPP=14788.6;RPPR=16222.3;RPR=6815;RUN=1;SAF=3;SAP=14779.9;SAR=6814;SRF=519;SRP=16222.3;SRR=8912;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:96:74,22:74:2647:22:784:-41.985,0,-209.577	0/1:208:99,109:99:3551:109:3914:-289.801,0,-257.183	0/1:281:192,89:192:6822:89:3196:-203.256,0,-529.462	0/1:264:188,76:188:6727:76:2720:-165.572,0,-526.033	0/1:132:80,52:80:2868:52:1856:-127.584,0,-218.621	0/1:49:32,17:32:1152:17:612:-40.663,0,-89.2397	0/1:238:104,134:104:3687:134:4807:-361.138,0,-260.388	0/1:215:106,109:106:3795:109:3881:-284.753,0,-277.026	0/1:197:103,94:103:3668:94:3345:-241.964,0,-271.022	0/1:169:102,67:102:3647:67:2401:-165.47,0,-277.56	0/1:117:80,37:80:2864:37:1320:-83.8814,0,-222.777	0/1:197:115,81:115:4092:81:2916:-203.308,0,-309.104	0/1:137:69,68:69:2468:68:2443:-178.884,0,-181.133	0/1:125:92,33:92:3281:33:1184:-69.2396,0,-257.88	0/1:136:69,67:69:2467:67:2386:-174.056,0,-181.343	0/1:132:65,67:65:2323:67:2396:-176.161,0,-169.594	0/1:126:68,58:68:2410:58:2088:-150.26,0,-179.224	0/1:70:39,31:39:1400:31:1110:-79.1388,0,-105.227	0/1:73:43,30:43:1501:30:1080:-75.5372,0,-113.406	0/1:382:189,193:189:6776:193:6871:-503.465,0,-494.918	0/1:271:156,115:156:5588:115:4116:-289.025,0,-421.463	0/1:209:168,41:168:5994:41:1464:-69.1401,0,-476.652	0/1:218:105,112:105:3738:112:4020:-296.451,0,-271.084	0/1:167:116,51:116:4094:51:1832:-114.889,0,-318.373	0/1:249:125,124:125:4442:124:4448:-325.515,0,-324.994	0/1:554:326,228:326:11674:228:8148:-566.562,0,-883.261	0/1:350:221,129:221:7914:129:4616:-310.174,0,-606.923	0/1:55:30,25:30:1067:25:885:-63.4099,0,-79.7846	0/1:637:354,283:354:12665:283:10133:-720.125,0,-947.915	0/1:294:144,150:144:5168:150:5361:-394.097,0,-376.756	0/1:192:128,63:128:4600:63:2264:-146.166,0,-356.306	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:20:10,10:10:351:10:360:-26.7237,0,-25.9061	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	0/1:440:265,175:265:9461:175:6244:-429.584,0,-718.999	0/1:146:105,41:105:3771:41:1464:-88.1057,0,-295.637	0/1:96:57,38:57:2018:38:1360:-93.743,0,-152.934	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:160:105,55:105:3754:55:1962:-128.69,0,-289.894	0/1:68:46,22:46:1631:22:792:-51.1356,0,-126.608	0/1:293:130,163:130:4663:163:5820:-435.712,0,-331.627	0/1:126:52,74:52:1830:74:2647:-200.546,0,-127.05	0/1:105:45,60:45:1607:60:2112:-158.738,0,-113.311	0/1:212:153,59:153:5464:59:2120:-127.25,0,-428.071	0/1:169:120,49:120:4273:49:1736:-105.648,0,-333.874	0/1:245:178,67:178:6357:67:2390:-141.592,0,-498.468	0/1:197:83,114:83:2945:114:4065:-306.733,0,-205.981	0/1:287:140,147:140:5008:147:5284:-389.297,0,-364.472	0/1:394:254,140:254:9047:140:5028:-334.059,0,-695.605	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:193:134,59:134:4808:59:2112:-132.25,0,-374.776	0/1:135:74,61:74:2644:61:2156:-153.666,0,-197.568	0/1:11:5,6:5:176:6:210:-15.9304,0,-12.8737	0/1:261:119,142:119:4244:142:5084:-379.1,0,-303.082	0/1:89:62,27:62:2204:27:966:-60.4655,0,-171.831	0/1:25:14,11:14:492:11:396:-28.457,0,-37.0866	0/0:26:25,1:25:900:1:36:0,-4.2285,-77.7227	0/1:172:107,65:107:3815:65:2324:-157.643,0,-291.768	0/1:179:129,50:129:4611:50:1791:-107.587,0,-361.27	0/1:19:4,15:4:144:15:540:-43.2146,0,-7.59405	0/1:274:193,81:193:6903:81:2904:-179.113,0,-538.855	0/1:326:191,135:191:6821:135:4836:-336.13,0,-515.825	0/1:125:59,66:59:2115:66:2344:-173.57,0,-152.989	0/1:211:116,95:116:4160:95:3403:-242.966,0,-311.065	0/1:273:140,133:140:5004:133:4771:-347.342,0,-368.324	0/1:120:104,16:104:3732:16:576:-16.0514,0,-299.956	0/1:67:34,32:34:1216:32:1124:-81.2377,0,-89.5188	0/1:127:69,58:69:2468:58:2050:-146.537,0,-184.143	0/1:112:86,26:86:3072:26:924:-49.7623,0,-242.994	0/1:58:31,27:31:1112:27:968:-69.9776,0,-82.9316	0/1:226:99,127:99:3532:127:4526:-339.474,0,-250.058	0/1:123:86,37:86:3092:37:1319:-81.9845,0,-241.48	0/1:316:142,174:142:5041:174:6200:-462.935,0,-358.711	0/1:311:148,163:148:5328:163:5832:-431.371,0,-386.03	0/1:326:177,149:177:6352:149:5295:-378.551,0,-473.633	0/1:154:71,83:71:2534:83:2968:-220.993,0,-181.952	0/1:11:7,4:7:248:4:140:-9.63325,0,-19.3529	0/1:194:136,58:136:4850:58:2084:-129.43,0,-378.252	0/1:171:129,42:129:4612:42:1489:-82.8264,0,-363.766	0/1:321:174,147:174:6221:147:5263:-377.174,0,-463.355	0/1:114:75,39:75:2680:39:1400:-91.9794,0,-207.128	0/1:117:64,53:64:2292:53:1891:-135.247,0,-171.321	0/1:87:49,38:49:1722:38:1356:-96.1509,0,-129.071	0/1:286:161,125:161:5717:125:4469:-316.282,0,-428.557	0/1:59:28,31:28:1004:31:1108:-82.2702,0,-72.9151	0/1:136:85,51:85:3026:51:1809:-122.15,0,-231.63	0/1:147:77,70:77:2755:70:2494:-180.461,0,-203.94	0/1:65:44,21:44:1584:21:747:-47.9874,0,-123.285	0/1:152:100,52:100:3583:52:1864:-122.283,0,-276.92	0/1:111:79,32:79:2832:32:1140:-69.4949,0,-221.704	0/1:250:119,131:119:4263:131:4704:-348.261,0,-308.59	0/1:218:120,98:120:4270:98:3486:-248.327,0,-318.855
chr10	16994	.	TC	TA,CA	337669	PASS	AB=0.730705,0.267861;ABP=3872.5,3920.74;AC=135,53;AF=0.718085,0.281915;AN=188;AO=13574,2250;CIGAR=1M1X,2X;DP=15847;DPB=15847.5;DPRA=0,1.10933;EPP=29478.6,4888.82;EPPR=9.52472;GTI=9;LEN=1,2;MEANALT=1.80851,2.2;MQM=59.2574,59.8311;MQMR=60;NS=94;NUMALT=2;ODDS=1.6221;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=486463,79857;QR=95;RO=3;RPL=13574,2250;RPP=29478.6,4888.82;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=29478.6,4888.82;SAR=13574,2250;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:63:0,46,17:0:0:46,17:1648,599:-183.457,-49.1198,-35.2724,-134.691,0,-129.573	1/1:362:0,361,1:0:0:361,1:12948,25:-1164.35,-108.672,0,-1162.41,-106.473,-1162.11	1/2:166:0,112,54:0:0:112,54:4004,1925:-483.526,-157.27,-123.555,-326.613,0,-310.357	1/2:267:0,195,72:0:0:195,72:6979,2536:-775.737,-206.8,-148.099,-569.29,0,-547.616	1/2:83:0,67,16:0:0:67,16:2412,574:-243.968,-47.1778,-27.0088,-197.149,0,-192.333	1/2:72:0,54,18:0:0:54,18:1914,640:-208.363,-52.5097,-36.2541,-156.209,0,-150.79	1/2:116:0,101,15:0:0:101,15:3600,538:-337.674,-44.2403,-13.8363,-293.792,0,-289.276	1/2:317:0,232,84:0:0:232,84:8296,2942:-913.442,-239.352,-169.513,-674.082,0,-648.796	1/2:183:0,137,46:0:0:137,46:4924,1640:-535.161,-133.676,-92.4348,-401.482,0,-387.635	1/2:159:0,128,31:0:0:128,31:4592,1082:-462.849,-88.3536,-49.8218,-374.846,0,-365.514	1/2:117:0,75,42:0:0:75,42:2676,1495:-339.421,-122.2,-99.6232,-217.576,0,-204.933	1/2:180:0,139,41:0:0:139,41:4992,1461:-525.245,-119.443,-77.5997,-406.158,0,-393.816	1/1:151:1,150,0:1:36:150,0:5384,0:-479.262,-41.8573,0,-479.563,-45.1545,-482.5	1/1:116:0,116,0:0:0:116,0:4160,0:-372.976,-34.9195,0,-372.976,-34.9195,-372.976	1/1:143:0,143,0:0:0:143,0:5121,0:-460.984,-43.0473,0,-460.984,-43.0473,-460.984	1/1:119:0,119,0:0:0:119,0:4280,0:-385.321,-35.8226,0,-385.321,-35.8226,-385.321	1/2:131:0,97,34:0:0:97,34:3472,1218:-381.963,-99.692,-70.4921,-282.629,0,-272.394	1/2:111:0,89,22:0:0:89,22:3200,792:-325.716,-64.983,-38.1913,-261.093,0,-254.47	1/2:94:0,69,25:0:0:69,25:2484,900:-274.129,-73.7953,-53.0242,-200.693,0,-193.167	1/2:410:0,328,80:0:0:328,80:11771,2852:-1191.54,-232.475,-133.737,-959.062,0,-934.979	1/2:292:0,206,86:0:0:206,86:7372,3051:-849.587,-248.916,-186.904,-601.026,0,-575.137	1/2:136:0,69,67:0:0:69,67:2457,2379:-394.451,-194.198,-173.427,-200.608,0,-180.439	1/2:121:0,91,30:0:0:91,30:3272,1068:-354.135,-87.3926,-59.9989,-267.099,0,-258.068	1/2:119:0,87,32:0:0:87,32:3128,1141:-348.218,-93.3652,-67.1756,-255.209,0,-245.576	1/2:178:0,129,49:0:0:129,49:4636,1747:-520.628,-142.73,-103.897,-378.255,0,-363.504	1/1:717:0,714,0:0:0:714,0:25551,0:-2297.19,-214.935,0,-2297.19,-214.935,-2297.19	1/1:272:0,271,1:0:0:271,1:9717,36:-873.636,-81.5791,0,-870.698,-78.2819,-870.397	1/2:59:0,47,12:0:0:47,12:1680,432:-172.401,-35.6088,-21.4604,-137.151,0,-133.539	1/2:469:0,368,99:0:0:368,99:13200,3517:-1362.36,-286.565,-175.786,-1075.79,0,-1045.99	1/1:211:0,211,0:0:0:211,0:7572,0:-679.071,-63.5173,0,-679.071,-63.5173,-679.071	1/1:176:0,176,0:0:0:176,0:6311,0:-567.86,-52.9813,0,-567.86,-52.9813,-567.86	1/1:8:0,8,0:0:0:8,0:284,0:-25.8987,-2.40824,0,-25.8987,-2.40824,-25.8987	1/2:60:0,49,11:0:0:49,11:1756,396:-175.805,-32.6714,-17.9209,-143.493,0,-140.182	1/1:8:0,8,0:0:0:8,0:284,0:-25.7712,-2.40824,0,-25.7712,-2.40824,-25.7712	1/1:19:0,19,0:0:0:19,0:684,0:-61.873,-5.71957,0,-61.873,-5.71957,-61.873	1/1:39:0,39,0:0:0:39,0:1400,0:-126.114,-11.7402,0,-126.114,-11.7402,-126.114	1/1:506:1,502,1:1:25:502,1:18000,36:-1614.27,-149.196,0,-1611.64,-148.17,-1613.28	1/2:280:0,191,87:0:0:191,87:6840,3090:-807.967,-251.779,-194.282,-556.184,0,-529.994	1/1:138:0,138,0:0:0:138,0:4952,0:-445.683,-41.5421,0,-445.683,-41.5421,-445.683	1/2:17:0,15,2:0:0:15,2:540,70:-50.1107,-6.04527,-1.52982,-44.4165,0,-43.8144	1/2:119:0,94,25:0:0:94,25:3369,874:-345.174,-70.5899,-42.293,-274.933,0,-267.407	1/2:74:0,51,23:0:0:51,23:1836,801:-215.018,-65.4725,-50.12,-149.897,0,-142.974	1/2:246:0,181,65:0:0:181,65:6456,2334:-714.838,-190.753,-136.266,-524.444,0,-504.877	1/2:204:0,149,55:0:0:149,55:5332,1950:-593.426,-159.206,-114.353,-434.575,0,-418.018	1/1:151:0,151,0:0:0:151,0:5412,0:-487.044,-45.4555,0,-487.044,-45.4555,-487.044	1/1:100:0,100,0:0:0:100,0:3556,0:-320.034,-30.103,0,-320.034,-30.103,-320.034	1/1:174:0,174,0:0:0:174,0:6204,0:-557.977,-52.3792,0,-557.977,-52.3792,-557.977	1/2:130:0,92,37:0:0:92,37:3300,1291:-374.015,-104.989,-77.2945,-269.018,0,-257.88	1/1:213:0,212,1:0:0:212,1:7588,36:-682.217,-63.8184,0,-679.279,-60.5211,-678.978	1/2:294:0,222,72:0:0:222,72:7956,2574:-857.739,-210.123,-143.295,-647.973,0,-626.299	1/1:338:0,338,0:0:0:338,0:12100,0:-1088.47,-101.748,0,-1088.47,-101.748,-1088.47	1/2:23:0,19,4:0:0:19,4:680,144:-67.4987,-12.1095,-6.38993,-55.7486,0,-54.5445	1/2:181:0,128,53:0:0:128,53:4604,1835:-525.029,-149.466,-110.934,-375.913,0,-359.958	1/2:58:0,49,8:0:0:49,8:1748,284:-165.49,-23.1358,-8.38537,-142.35,0,-139.942	1/2:35:0,17,18:0:0:17,18:612,644:-102.252,-52.8723,-47.7548,-49.7365,0,-44.318	1/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chr10	38430	.	TGCC	CGCC	18891.3	PASS	AB=0.443272;ABP=77.1669;AC=54;AF=0.290323;AN=186;AO=1188;CIGAR=1X3M;DP=4899;DPB=4899;DPRA=1.26644;EPP=2548.09;EPPR=7703.93;GTI=7;LEN=1;MEANALT=1.18966;MQM=59.9184;MQMR=59.9599;NS=93;NUMALT=1;ODDS=0.376301;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42423;QR=129180;RO=3689;RPL=1184;RPP=2548.09;RPPR=7703.93;RPR=4;RUN=1;SAF=0;SAP=2582.72;SAR=1188;SRF=0;SRP=8013.57;SRR=3689;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:29,30:29:983:30:1080:-79.7525,0,-71.013	0/0:59:59,0:59:2055:0:0:0,-17.7608,-185.215	0/1:113:49,64:49:1727:64:2277:-171.174,0,-121.697	0/1:110:66,44:66:2323:44:1572:-108.658,0,-176.215	0/1:36:19,17:19:652:17:604:-43.8535,0,-48.1621	0/1:20:12,8:12:410:8:288:-20.2468,0,-31.2071	0/1:29:14,15:14:481:15:540:-40.2067,0,-34.8853	0/1:51:30,21:30:1035:21:748:-52.2928,0,-78.1034	0/1:76:40,36:40:1413:36:1288:-93.3453,0,-104.589	0/1:59:30,26:30:1059:26:928:-66.6284,0,-78.415	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:41:27,14:27:930:14:504:-33.3559,0,-71.6657	0/0:29:29,0:29:1026:0:0:0,-8.72987,-92.6528	0/1:17:15,2:15:538:2:72:-1.71921,0,-43.6383	0/0:36:36,0:36:1268:0:0:0,-10.8371,-114.422	0/0:23:22,0:22:778:0:0:0,-6.62266,-69.9822	0/0:10:10,0:10:357:0:0:0,-3.0103,-32.4721	0/1:18:12,6:12:404:6:216:-14.372,0,-31.265	0/1:11:5,6:5:174:6:216:-16.4792,0,-12.6899	0/1:104:59,45:59:2071:45:1603:-113.252,0,-155.354	0/1:111:55,56:55:1917:56:2012:-147.939,0,-139.391	0/1:104:50,54:50:1729:54:1921:-141.858,0,-124.564	0/1:72:33,39:33:1154:39:1382:-103.003,0,-82.4903	0/1:54:33,21:33:1146:21:745:-50.9587,0,-87.1872	0/1:75:36,37:36:1252:37:1316:-96.4168,0,-90.664	0/0:211:205,5:205:7152:5:171:0,-47.8477,-628.026	0/0:151:150,1:150:5268:1:36:0,-41.8573,-470.665	0/1:10:8,2:8:281:2:72:-3.82642,0,-22.6199	0/1:182:105,76:105:3676:76:2719:-190.107,0,-276.201	0/0:94:93,0:93:3266:0:0:0,-27.9958,-293.805	0/0:87:86,1:86:3025:1:36:0,-22.5913,-268.883	0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2417	0/1:16:10,6:10:358:6:216:-14.974,0,-27.7465	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5215	0/0:88:88,0:88:3137:0:0:0,-26.4906,-282.556	0/1:71:43,28:43:1520:28:1000:-68.9422,0,-115.719	0/0:15:15,0:15:537:0:0:0,-4.51545,-48.6655	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:65:36,29:36:1285:29:1040:-74.3474,0,-96.3864	0/1:8:5,3:5:179:3:108:-7.66693,0,-14.0522	0/1:82:48,31:48:1693:31:1094:-74.628,0,-128.515	0/1:12:10,2:10:354:2:72:-3.22436,0,-28.5871	0/0:22:22,0:22:758:0:0:0,-6.62266,-68.5366	0/0:67:65,0:65:2284:0:0:0,-19.5669,-205.461	0/0:55:54,0:54:1883:0:0:0,-16.2556,-169.388	0/1:58:38,20:38:1319:20:697:-45.5909,0,-101.548	0/0:55:55,0:55:1909:0:0:0,-16.5566,-172.074	0/1:57:37,20:37:1318:20:720:-47.9701,0,-101.764	0/0:99:99,0:99:3464:0:0:0,-29.802,-311.975	0/1:5:4,1:4:137:1:32:-1.69416,0,-11.1625	0/1:66:30,35:30:1048:35:1252:-93.0584,0,-74.7028	0/1:34:20,13:20:712:13:464:-31.8039,0,-54.113	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:55:54,0:54:1871:0:0:0,-16.2556,-168.306	0/1:31:14,17:14:465:17:612:-46.0815,0,-32.6757	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.2563	0/0:78:77,0:77:2686:0:0:0,-23.1793,-241.623	0/1:66:36,30:36:1272:30:1072:-76.9245,0,-94.9142	0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5165	0/1:82:48,34:48:1690:34:1224:-85.7826,0,-127.7	0/0:97:97,0:97:3351:0:0:0,-29.1999,-301.722	0/0:80:77,1:77:2688:1:36:0,-20.2419,-238.567	0/0:42:42,0:42:1465:0:0:0,-12.6433,-132.143	0/1:92:49,42:49:1728:42:1491:-106.73,0,-128.049	0/0:109:109,0:109:3788:0:0:0,-32.8123,-341.124	0/1:12:8,4:8:270:4:144:-9.70126,0,-21.0163	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1224	0/0:27:27,0:27:954:0:0:0,-8.12781,-86.1752	0/0:13:13,0:13:450:0:0:0,-3.91339,-40.829	0/1:83:52,31:52:1804:31:1103:-74.3227,0,-137.653	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.948	0/0:133:132,1:132:4619:1:36:0,-36.4387,-412.276	0/1:72:40,32:40:1421:32:1148:-81.9557,0,-106.513	0/0:71:71,0:71:2454:0:0:0,-21.3731,-221.116	0/0:82:82,0:82:2903:0:0:0,-24.6845,-261.507	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:38:21,17:21:748:17:612:-43.9743,0,-56.2061	0/0:70:70,0:70:2451:0:0:0,-21.0721,-220.844	0/1:129:78,51:78:2706:51:1817:-124.976,0,-204.952	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.665	0/1:16:12,4:12:405:4:144:-8.49714,0,-31.957	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5799	0/1:52:22,30:22:762:30:1076:-81.4993,0,-53.2435	0/0:18:18,0:18:645:0:0:0,-5.41854,-58.3812	0/1:26:10,16:10:354:16:572:-43.9848,0,-24.3729	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7693	0/1:7:3,4:3:107:4:144:-11.2064,0,-7.87496	0/1:49:28,21:28:995:21:747:-52.8038,0,-75.1143	0/1:32:12,20:12:414:20:720:-55.4935,0,-27.957	0/0:61:61,0:61:2124:0:0:0,-18.3628,-191.428	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.498
chr10	170656	.	A	G	109778	PASS	AB=0.456998;ABP=75.6588;AC=135;AF=0.718085;AN=188;AO=5388;CIGAR=1X;DP=7851;DPB=7851;DPRA=0;EPP=11616.2;EPPR=5338.32;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9564;MQMR=59.9943;NS=94;NUMALT=1;ODDS=0.965859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191266;QR=87992;RO=2457;RPL=5377;RPP=11607.6;RPPR=5329.64;RPR=11;RUN=1;SAF=5387;SAP=11694.2;SAR=1;SRF=2456;SRP=5329.64;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:134:1,133:1:36:133:4723:-421.629,-36.7397,0	0/1:113:69,44:69:2476:44:1565:-107.123,0,-189.077	0/1:101:56,45:56:2008:45:1598:-113.705,0,-150.589	0/1:45:32,13:32:1148:13:468:-28.9133,0,-90.0835	0/1:21:10,11:10:360:11:392:-29.2984,0,-26.4227	0/1:156:70,86:70:2516:86:3063:-228.937,0,-179.731	0/1:138:72,66:72:2572:66:2349:-170.125,0,-190.188	0/1:75:41,34:41:1450:34:1224:-87.8898,0,-108.217	0/1:80:47,33:47:1673:33:1184:-82.7859,0,-126.773	0/1:85:44,41:44:1562:41:1459:-106.018,0,-115.283	0/1:56:29,27:29:1031:27:968:-70.5797,0,-76.2449	1/1:66:0,66:0:0:66:2321:-209.15,-19.868,0	1/1:99:0,99:0:0:99:3447:-310.445,-29.802,0	1/1:53:0,53:0:0:53:1887:-170.103,-15.9546,0	1/1:32:0,32:0:0:32:1112:-100.384,-9.63296,0	0/1:69:39,30:39:1391:30:1047:-73.7682,0,-104.717	0/1:63:35,28:35:1256:28:1000:-71.3505,0,-94.3804	0/1:41:20,21:20:711:21:752:-55.664,0,-51.9734	0/1:195:117,78:117:4196:78:2797:-193.268,0,-319.12	0/1:95:57,38:57:2048:38:1346:-92.8406,0,-155.986	0/1:116:79,37:79:2840:37:1298:-82.1977,0,-220.918	0/1:34:17,17:17:612:17:603:-44.3645,0,-45.1784	0/1:94:64,30:64:2268:30:1068:-68.1352,0,-176.084	0/1:78:45,33:45:1611:33:1158:-81.0439,0,-121.799	1/1:256:0,255:0:0:255:9039:-813.134,-76.7627,0	1/1:129:0,129:0:0:129:4564:-410.862,-38.8329,0	0/1:31:18,13:18:648:13:460:-32.3952,0,-49.32	0/1:244:135,109:135:4852:109:3883:-276.212,0,-363.38	1/1:93:0,93:0:0:93:3316:-298.659,-27.9958,0	1/1:88:0,88:0:0:88:3151:-283.805,-26.4906,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	1/1:9:0,9:0:0:9:315:-28.6872,-2.70927,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:171:0,171:0:0:171:6034:-543.171,-51.4761,0	0/1:208:122,86:122:4376:86:3075:-214.356,0,-331.399	1/1:64:0,64:0:0:64:2262:-203.842,-19.2659,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:91:50,41:50:1796:41:1443:-102.77,0,-134.529	0/1:37:17,20:17:612:20:711:-53.1775,0,-44.2753	0/1:155:85,69:85:3048:69:2446:-173.676,0,-227.831	0/1:52:21,31:21:756:31:1068:-80.7689,0,-52.7137	1/1:48:0,48:0:0:48:1676:-151.122,-14.4494,0	1/1:47:0,47:0:0:47:1662:-149.863,-14.1484,0	1/1:115:0,115:0:0:115:4066:-366.128,-34.6185,0	0/1:157:94,63:94:3376:63:2260:-156.401,0,-256.793	1/1:75:0,75:0:0:75:2657:-239.376,-22.5773,0	0/1:122:77,45:77:2764:45:1585:-106.125,0,-212.271	1/1:126:0,125:0:0:125:4434:-398.769,-37.6288,0	0/1:25:8,17:8:288:17:608:-47.5263,0,-18.7417	0/1:144:74,70:74:2625:70:2503:-182.174,0,-193.148	0/1:40:20,20:20:720:20:711:-52.2744,0,-53.0876	0/1:17:5,12:5:180:12:419:-32.9252,0,-11.4346	1/1:100:0,100:0:0:100:3558:-320.429,-30.103,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/1:38:23,15:23:820:15:540:-37.4928,0,-62.6834	1/1:73:0,73:0:0:73:2599:-234.159,-21.9752,0	0/1:154:77,77:77:2752:77:2746:-201.023,0,-201.564	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:152:81,71:81:2908:71:2509:-180.305,0,-216.198	1/1:173:0,172:0:0:172:6114:-549.997,-51.7772,0	1/1:93:0,93:0:0:93:3321:-299.107,-27.9958,0	1/1:82:0,82:0:0:82:2916:-262.674,-24.6845,0	0/1:116:59,57:59:2124:57:2012:-146.431,0,-156.509	1/1:117:0,117:0:0:117:4187:-377.011,-35.2205,0	0/1:34:20,14:20:708:14:500:-35.1012,0,-53.8106	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:70:0,70:0:0:70:2496:-224.893,-21.0721,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	0/1:72:37,35:37:1313:35:1248:-90.9507,0,-96.7955	1/1:58:0,58:0:0:58:2060:-185.657,-17.4597,0	1/1:103:0,103:0:0:103:3607:-324.828,-31.0061,0	0/1:180:76,104:76:2720:104:3683:-277.488,0,-190.858	1/1:107:0,106:0:0:106:3767:-338.87,-31.9092,0	1/1:85:0,85:0:0:85:3027:-272.661,-25.5876,0	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	0/1:82:42,40:42:1504:40:1422:-103.591,0,-110.97	1/1:114:0,114:0:0:114:4059:-365.498,-34.3174,0	0/1:187:92,94:92:3289:94:3348:-245.185,0,-239.876	1/1:85:0,85:0:0:85:3020:-272.033,-25.5876,0	0/1:51:22,29:22:788:29:1040:-78.5618,0,-55.8923	1/1:62:0,62:0:0:62:2199:-198.175,-18.6639,0	0/1:114:66,48:66:2372:48:1688:-117.886,0,-179.42	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:66:41,25:41:1464:25:887:-60.2801,0,-112.188	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	0/1:51:19,32:19:680:32:1135:-87.1055,0,-46.1766	0/1:150:84,66:84:3016:66:2322:-164.084,0,-226.516	0/1:36:25,11:25:900:11:396:-25.1457,0,-70.4839	1/1:79:1,78:1:36:78:2769:-245.834,-20.1831,0	1/1:103:1,102:1:36:102:3611:-321.598,-27.4078,0
chr10	170750	.	GTT	GTC,ATC	187924	PASS	AB=0.476218,0.521655;ABP=28.418,24.0768;AC=135,53;AF=0.718085,0.281915;AN=188;AO=6177,2707;CIGAR=2M1X,1X1M1X;DP=8898;DPB=8898;DPRA=0,1.16627;EPP=13416.2,5881.19;EPPR=7.35324;GTI=0;LEN=1,3;MEANALT=1.75532,2.18644;MQM=59.6421,59.9217;MQMR=60;NS=94;NUMALT=2;ODDS=0.884882;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=220635,95654;QR=70;RO=2;RPL=6177,2707;RPP=13416.2,5881.19;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13416.2,5881.19;SAR=6177,2707;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,25,28:0:0:25,28:900,988:-154.243,-80.8041,-73.2784,-73.7953,0,-65.3664	1/1:148:0,148,0:0:0:148,0:5312,0:-478.143,-44.5524,0,-478.143,-44.5524,-478.143	1/2:132:0,72,60:0:0:72,60:2546,2110:-379.464,-172.107,-150.433,-207.709,0,-189.648	1/2:184:0,71,113:0:0:71,113:2522,3971:-528.981,-323.494,-302.12,-205.841,0,-171.824	1/2:72:0,28,44:0:0:28,44:996,1570:-209.516,-128.346,-119.917,-81.526,0,-68.2807	1/2:57:0,32,25:0:0:32,25:1129,886:-164.457,-72.5308,-62.8978,-92.2801,0,-84.7544	1/2:147:0,61,86:0:0:61,86:2150,3061:-423.847,-249.831,-231.468,-174.369,0,-148.48	1/2:149:0,68,81:0:0:68,81:2406,2852:-428.493,-232.531,-212.061,-196.314,0,-171.931	1/2:101:0,40,61:0:0:40,61:1402,2166:-290.92,-176.844,-164.803,-114.429,0,-96.0657	1/2:105:0,52,53:0:0:52,53:1864,1866:-304.276,-152.262,-136.609,-152.369,0,-136.414	1/2:47:0,23,24:0:0:23,24:813,837:-134.543,-68.3332,-61.4096,-66.5608,0,-59.3361	1/2:63:0,27,35:0:0:27,35:953,1241:-178.687,-101.098,-92.9702,-77.5832,0,-67.0471	1/1:67:1,66,0:1:36:66,0:2357,0:-208.776,-16.5707,0,-209.077,-19.868,-212.015	1/1:58:0,58,0:0:0:58,0:2073,0:-186.829,-17.4597,0,-186.829,-17.4597,-186.829	1/1:67:0,67,0:0:0:67,0:2412,0:-217.323,-20.169,0,-217.323,-20.169,-217.323	1/1:49:0,49,0:0:0:49,0:1749,0:-157.521,-14.7505,0,-157.521,-14.7505,-157.521	1/2:52:0,29,23:0:0:29,23:1040,815:-151.569,-66.7405,-58.0106,-85.1845,0,-78.2608	1/2:42:0,23,19:0:0:23,19:824,682:-123.188,-55.9899,-49.0662,-67.5563,0,-61.8367	1/2:35:0,16,19:0:0:16,19:576,666:-101.546,-54.5434,-49.7269,-47.3585,0,-41.6389	1/2:201:1,91,109:1:34:91,109:3238,3898:-578.494,-315.104,-290.468,-260.95,0,-230.895	1/2:141:0,61,80:0:0:61,80:2139,2834:-405.266,-231.217,-212.854,-174.401,0,-150.319	1/2:181:0,48,133:0:0:48,133:1713,4726:-525.075,-385.436,-370.986,-139.996,0,-99.9591	1/2:85:0,39,46:0:0:39,46:1400,1616:-246.077,-131.88,-120.14,-114.552,0,-100.705	1/2:140:0,62,78:0:0:62,78:2194,2746:-402.565,-223.873,-205.209,-179.045,0,-155.564	1/2:67:0,43,24:0:0:43,24:1544,857:-196.142,-70.2266,-57.2823,-126.273,0,-119.048	1/1:271:0,270,1:0:0:270,1:9629,36:-866.155,-81.2781,0,-863.218,-77.9809,-862.917	1/1:204:0,204,0:0:0:204,0:7289,0:-655.857,-61.4101,0,-655.857,-61.4101,-655.857	1/2:23:0,8,15:0:0:8,15:284,512:-65.0325,-41.8875,-39.4793,-23.4951,0,-18.9797	1/2:254:0,145,107:0:0:145,107:5197,3784:-732.053,-308.259,-264.61,-423.863,0,-391.652	1/1:177:0,177,0:0:0:177,0:6344,0:-571.032,-53.2823,0,-571.032,-53.2823,-571.032	1/1:77:0,77,0:0:0:77,0:2753,0:-247.982,-23.1793,0,-247.982,-23.1793,-247.982	1/1:12:0,12,0:0:0:12,0:428,0:-38.8542,-3.61236,0,-38.8542,-3.61236,-38.8542	1/2:25:0,12,13:0:0:12,13:428,466:-73.2418,-38.3653,-34.7529,-35.2338,0,-31.3204	1/1:4:0,4,0:0:0:4,0:144,0:-13.3068,-1.20412,0,-13.3068,-1.20412,-13.3068	1/1:15:0,15,0:0:0:15,0:536,0:-48.5715,-4.51545,0,-48.5715,-4.51545,-48.5715	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:176:0,175,0:0:0:175,0:6280,0:-564.85,-52.6803,0,-564.85,-52.6803,-564.85	1/2:213:0,103,110:0:0:103,110:3694,3908:-619.956,-318.802,-287.796,-301.511,0,-268.398	1/1:56:0,56,0:0:0:56,0:2012,0:-181.343,-16.8577,0,-181.343,-16.8577,-181.343	1/2:5:0,2,3:0:0:2,3:72,106:-14.8635,-8.98601,-8.38395,-6.23466,0,-5.33157	1/2:164:0,75,88:0:0:75,88:2680,3081:-469.08,-250.667,-228.09,-218.407,0,-191.916	1/2:44:0,22,22:0:0:22,22:788,792:-129.243,-64.983,-58.3604,-64.6188,0,-57.9961	1/2:129:0,65,64:0:0:65,64:2302,2254:-370.661,-183.854,-164.287,-187.159,0,-167.893	1/2:48:0,24,24:0:0:24,24:860,862:-140.814,-70.6776,-63.4529,-70.4946,0,-63.2699	1/1:69:0,69,0:0:0:69,0:2454,0:-221.099,-20.7711,0,-221.099,-20.7711,-221.099	1/1:70:0,70,0:0:0:70,0:2497,0:-224.948,-21.0721,0,-224.948,-21.0721,-224.948	1/1:119:0,119,0:0:0:119,0:4231,0:-380.949,-35.8226,0,-380.949,-35.8226,-380.949	1/2:216:0,104,112:0:0:104,112:3696,3934:-621.655,-320.537,-289.23,-301.471,0,-267.755	1/1:92:0,92,0:0:0:92,0:3274,0:-294.852,-27.6948,0,-294.852,-27.6948,-294.852	1/2:119:0,58,61:0:0:58,61:2080,2139:-344.045,-174.413,-156.954,-169.986,0,-151.623	1/1:161:0,161,0:0:0:161,0:5742,0:-516.841,-48.4658,0,-516.841,-48.4658,-516.841	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/2:117:0,65,52:0:0:65,52:2336,1824:-339.359,-148.785,-129.218,-190.929,0,-175.275	1/2:28:0,18,10:0:0:18,10:636,350:-80.605,-28.8261,-23.4076,-52.1298,0,-49.1195	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/1:95:0,95,0:0:0:95,0:3378,0:-304.228,-28.5979,0,-304.228,-28.597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chr10	171669	.	C	G	27173.8	PASS	AB=0.536867;ABP=37.7546;AC=53;AF=0.284946;AN=186;AO=1585;CIGAR=1X;DP=5377;DPB=5377;DPRA=0.982514;EPP=3444.79;EPPR=8176.54;GTI=2;LEN=1;MEANALT=1;MQM=59.9905;MQMR=59.9887;NS=93;NUMALT=1;ODDS=2.18393;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56680;QR=135262;RO=3792;RPL=1585;RPP=3444.79;RPPR=8176.54;RPR=0;RUN=1;SAF=0;SAP=3444.79;SAR=1585;SRF=0;SRP=8237.23;SRR=3792;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:15,22:15:525:22:788:-60.1067,0,-36.4399	0/0:77:75,2:75:2673:2:72:0,-16.3426,-233.977	0/1:48:24,24:24:848:24:852:-62.5509,0,-62.1902	0/1:61:27,34:27:949:34:1216:-91.3837,0,-67.3599	0/1:34:15,19:15:536:19:684:-51.6553,0,-38.3398	0/1:35:22,13:22:777:13:464:-31.5615,0,-59.7143	0/1:72:32,40:32:1137:40:1440:-108.224,0,-80.9628	0/1:63:31,32:31:1097:32:1141:-84.0332,0,-80.0731	0/1:61:20,41:20:716:41:1468:-114.05,0,-46.4049	0/1:53:30,23:30:1057:23:820:-58.1679,0,-79.4844	0/1:72:33,39:33:1184:39:1400:-104.625,0,-85.1942	0/1:99:49,50:49:1752:50:1792:-131.761,0,-128.162	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.597	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:80:80,0:80:2857:0:0:0,-24.0824,-257.366	0/1:67:30,37:30:1065:37:1321:-99.0218,0,-75.9907	0/1:93:41,52:41:1461:52:1868:-140.403,0,-103.788	0/1:58:29,29:29:1044:29:1035:-76.0033,0,-76.8151	0/1:54:23,31:23:824:31:1112:-84.1357,0,-58.2277	0/1:67:32,35:32:1137:35:1224:-90.2929,0,-82.468	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	0/1:28:16,12:16:572:12:432:-30.7924,0,-43.3846	0/1:57:30,27:30:1052:27:956:-69.1925,0,-77.829	0/1:39:21,18:21:752:18:635:-45.7368,0,-56.2661	0/0:96:96,0:96:3399:0:0:0,-28.8989,-306.122	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.016	0/1:46:22,24:22:788:24:863:-64.1451,0,-57.3974	0/1:116:39,77:39:1404:77:2768:-214.441,0,-91.7398	0/0:38:38,0:38:1338:0:0:0,-11.4391,-120.716	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:189:189,0:189:6741:0:0:0,-56.8947,-606.763	0/1:35:11,24:11:396:24:856:-66.8251,0,-25.4467	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:74:20,54:20:720:54:1940:-152.6,0,-42.8526	0/1:54:33,21:33:1180:21:748:-51.3897,0,-90.2524	0/1:68:37,31:37:1279:31:1112:-79.9213,0,-94.9344	0/1:90:37,53:37:1328:53:1883:-142.655,0,-92.7295	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:60:26,34:26:924:34:1220:-92.045,0,-65.4159	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:59:25,34:25:885:34:1214:-91.8054,0,-62.2058	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:61:21,40:21:756:40:1432:-110.815,0,-50.0044	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.441	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/1:98:44,54:44:1571:54:1931:-144.566,0,-112.18	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:57:28,29:28:996:29:1040:-76.7557,0,-72.7962	0/0:62:62,0:62:2182:0:0:0,-18.6639,-196.643	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/1:62:27,35:27:972:35:1256:-94.6814,0,-69.134	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.907	0/1:23:8,15:8:288:15:540:-42.0128,0,-19.3437	0/0:57:57,0:57:2006:0:0:0,-17.1587,-180.81	0/0:106:106,0:106:3781:0:0:0,-31.9092,-340.488	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:24:11,13:11:392:13:464:-34.8728,0,-28.3953	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:89:89,0:89:3145:0:0:0,-26.7917,-283.274	0/1:57:31,26:31:1112:26:923:-66.2281,0,-83.2326	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/0:78:76,2:76:2724:2:72:0,-16.6436,-238.566	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:59:25,34:25:900:34:1220:-92.346,0,-63.5602	0/1:44:40,4:40:1421:4:144:-0.0682978,0,-114.94	0/1:113:64,49:64:2291:49:1752:-123.948,0,-172.434	0/0:97:97,0:97:3473:0:0:0,-29.1999,-312.78	0/1:66:28,38:28:1008:38:1355:-102.382,0,-71.1684	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.731	0/1:134:67,67:67:2377:67:2382:-174.299,0,-173.849	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:76:37,39:37:1328:39:1400:-103.421,0,-96.944	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.832	0/1:97:49,48:49:1760:48:1719:-125.795,0,-129.484	0/1:121:57,64:57:2052:64:2287:-169.666,0,-148.527	0/1:64:12,52:12:432:52:1855:-147.963,0,-19.9553	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.776	0/0:124:124,0:124:4441:0:0:0,-37.3277,-399.859
chr10	172786	.	T	C	104875	PASS	AB=0.497079;ABP=3.28937;AC=135;AF=0.725806;AN=186;AO=4918;CIGAR=1X;DP=6818;DPB=6818;DPRA=0;EPP=9923.26;EPPR=3903.67;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9957;MQMR=59.9958;NS=93;NUMALT=1;ODDS=2.28857;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174832;QR=67499;RO=1895;RPL=4829;RPP=9923.26;RPPR=3903.67;RPR=89;RUN=1;SAF=0;SAP=10682.3;SAR=4918;SRF=0;SRP=4117.95;SRR=1895;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:10,3:10:360:3:99:-5.32319,0,-28.8309	1/1:83:0,83:0:0:83:2971:-267.622,-24.9855,0	0/1:104:49,55:49:1752:55:1934:-143.027,0,-126.657	0/1:103:46,57:46:1637:57:2022:-151.246,0,-116.611	0/1:49:23,26:23:820:26:936:-69.809,0,-59.372	0/1:46:26,20:26:932:20:699:-49.3656,0,-70.3515	0/1:106:73,33:73:2588:33:1180:-74.5989,0,-201.261	0/1:85:48,36:48:1704:36:1284:-90.256,0,-128.039	0/1:58:40,18:40:1424:18:632:-39.747,0,-110.998	0/1:53:32,21:32:1144:21:747:-51.5997,0,-87.3149	0/1:61:33,28:33:1184:28:965:-68.7935,0,-88.5055	0/1:90:54,36:54:1924:36:1292:-89.4911,0,-146.344	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:66:0,66:0:0:66:2310:-208.157,-19.868,0	1/1:77:0,77:0:0:77:2748:-247.562,-23.1793,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	0/1:55:26,29:26:916:29:1020:-75.5527,0,-66.1998	0/1:55:31,24:31:1112:24:835:-58.9093,0,-83.8347	0/1:45:23,22:23:807:22:784:-57.3376,0,-59.4028	0/1:124:61,63:61:2168:63:2251:-165.525,0,-158.059	0/1:115:41,74:41:1464:74:2636:-202.869,0,-97.4376	0/1:80:54,26:54:1916:26:917:-58.7622,0,-148.635	0/1:53:32,21:32:1144:21:756:-52.4126,0,-87.3126	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:50:23,27:23:824:27:964:-72.0253,0,-59.4318	1/1:282:0,281:0:0:281:9984:-898.144,-84.5894,0	1/1:141:0,141:0:0:141:5002:-450.33,-42.4452,0	0/1:48:26,22:26:928:22:770:-55.1699,0,-69.3888	0/1:203:107,96:107:3840:96:3391:-244.297,0,-284.686	1/1:80:0,80:0:0:80:2831:-255.03,-24.0824,0	1/1:115:0,115:0:0:115:4094:-368.647,-34.6185,0	1/1:7:0,7:0:0:7:244:-22.2989,-2.10721,0	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	1/1:4:0,4:0:0:4:133:-12.2976,-1.20412,0	1/1:7:0,7:0:0:7:232:-21.2029,-2.10721,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:218:0,218:0:0:218:7742:-696.818,-65.6245,0	0/1:157:62,95:62:2198:95:3400:-258.953,0,-150.823	1/1:70:0,70:0:0:70:2478:-223.273,-21.0721,0	.:.:.:.:.:.:.:.	0/1:47:24,23:24:852:23:816:-59.6133,0,-62.852	0/1:48:22,26:22:788:26:932:-69.7494,0,-56.7954	0/1:49:25,24:25:883:24:860:-62.9714,0,-65.037	0/1:95:46,49:46:1631:49:1727:-127.114,0,-118.478	1/1:61:0,61:0:0:61:2157:-194.396,-18.3628,0	1/1:109:0,109:0:0:109:3856:-347.237,-32.8123,0	1/1:77:0,77:0:0:77:2747:-247.472,-23.1793,0	0/1:120:49,71:49:1740:71:2526:-191.467,0,-120.761	1/1:70:1,69:1:36:69:2455:-217.606,-17.4738,0	0/1:91:37,54:37:1324:54:1927:-146.312,0,-92.0684	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	0/1:106:43,63:43:1536:63:2251:-170.943,0,-106.624	0/1:26:11,15:11:396:15:536:-40.748,0,-28.156	0/1:18:8,10:8:279:10:360:-27.3258,0,-20.029	1/1:87:0,86:0:0:86:3006:-270.412,-25.8886,0	0/1:41:27,13:27:968:13:456:-29.0749,0,-75.1423	0/1:5:1,4:1:36:4:129:-10.4225,0,-2.09312	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:109:54,55:54:1902:55:1972:-144.943,0,-138.644	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:165:78,87:78:2769:87:3111:-230.547,0,-199.781	1/1:163:1,162:1:36:162:5763:-515.189,-45.4696,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	0/1:126:64,62:64:2292:62:2195:-159.885,0,-168.612	1/1:70:0,70:0:0:70:2495:-224.803,-21.0721,0	0/1:20:6,14:6:212:14:495:-38.8624,0,-13.4042	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:96:0,96:0:0:96:3422:-308.194,-28.8989,0	1/1:9:0,9:0:0:9:314:-28.5969,-2.70927,0	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:169:0,169:0:0:169:5984:-538.667,-50.8741,0	0/1:107:54,53:54:1902:53:1872:-136.547,0,-139.246	1/1:67:0,67:0:0:67:2391:-215.447,-20.169,0	1/1:84:0,84:0:0:84:2991:-269.422,-25.2865,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:90:43,47:43:1532:47:1672:-123.675,0,-111.08	1/1:73:0,73:0:0:73:2587:-233.077,-21.9752,0	0/1:178:69,109:69:2460:109:3859:-293.924,0,-168.071	1/1:84:0,84:0:0:84:2999:-270.142,-25.2865,0	0/1:82:47,35:47:1656:35:1252:-88.3006,0,-124.64	1/1:80:0,80:0:0:80:2848:-256.559,-24.0824,0	0/1:145:67,78:67:2404:78:2787:-207.421,0,-172.967	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:72:31,41:31:1103:41:1457:-109.75,0,-77.9056	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0	0/1:39:28,11:28:1000:11:388:-23.5172,0,-78.5752	0/1:85:50,35:50:1780:35:1239:-86.2261,0,-134.895	0/1:70:51,19:51:1832:19:684:-40.8182,0,-144.089	1/1:90:0,90:0:0:90:3216:-289.663,-27.0927,0	1/1:97:1,95:1:36:95:3404:-302.976,-25.6604,0
chr10	244938	.	G	T	36293.4	PASS	AB=0.532665;ABP=39.0429;AC=52;AF=0.276596;AN=188;AO=2081;CIGAR=1X;DP=6653;DPB=6653;DPRA=1.2321;EPP=4426.8;EPPR=9503.42;GTI=2;LEN=1;MEANALT=1.03704;MQM=59.9798;MQMR=59.9921;NS=94;NUMALT=1;ODDS=0.63824;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74583;QR=163107;RO=4569;RPL=2070;RPP=4426.8;RPPR=9503.42;RPR=11;RUN=1;SAF=0;SAP=4521.84;SAR=2081;SRF=4;SRP=9889.75;SRR=4565;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:20,15:20:703:15:540:-38.4005,0,-53.0575	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:107:44,63:44:1580:63:2256:-171.093,0,-110.281	0/1:202:90,112:90:3176:112:4020:-301.18,0,-225.257	0/1:33:19,14:19:667:14:493:-34.7677,0,-50.4206	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:75:39,36:39:1396:36:1292:-94.0065,0,-103.362	0/1:105:41,64:41:1442:64:2279:-173.761,0,-98.4662	0/1:110:41,69:41:1468:69:2476:-189.98,0,-99.3028	0/1:103:44,59:44:1576:59:2105:-158.712,0,-111.125	0/1:64:33,31:33:1184:31:1112:-81.1254,0,-87.6024	0/1:109:45,64:45:1583:64:2300:-174.449,0,-109.947	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:51:51,0:51:1798:0:0:0,-15.3525,-162.101	0/0:90:90,0:90:3207:0:0:0,-27.0927,-288.853	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/1:36:25,11:25:885:11:396:-25.1457,0,-69.1294	0/1:42:15,27:15:536:27:968:-74.7941,0,-35.9316	0/1:26:20,6:20:716:6:212:-11.598,0,-56.9409	0/1:108:51,57:51:1832:57:2048:-152.08,0,-132.65	0/1:121:54,67:54:1940:67:2404:-180.192,0,-138.452	0/1:40:10,30:10:360:30:1080:-85.4721,0,-20.7031	0/1:127:54,73:54:1936:73:2616:-197.457,0,-136.286	0/1:44:23,21:23:828:21:752:-54.7609,0,-61.5988	0/1:50:24,26:24:860:26:926:-68.6055,0,-62.6703	0/0:179:178,0:178:6366:0:0:0,-53.5833,-572.67	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.269	0/1:38:20,18:20:716:18:644:-46.8515,0,-53.3286	0/1:214:110,104:110:3956:104:3724:-270.94,0,-291.809	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:72:72,0:72:2566:0:0:0,-21.6742,-231.189	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:172:172,0:172:6139:0:0:0,-51.7772,-552.611	0/1:53:29,24:29:1036:24:864:-62.128,0,-77.5993	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:131:57,74:57:2019:74:2659:-200.12,0,-142.548	0/1:30:16,13:16:567:13:453:-32.0107,0,-42.2714	0/1:95:43,51:43:1548:51:1819:-135.333,0,-110.956	0/1:74:37,37:37:1332:37:1332:-97.9062,0,-97.9062	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.994	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:146:73,73:73:2595:73:2616:-191.737,0,-189.849	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:76:40,36:40:1432:36:1296:-94.0657,0,-106.299	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:57:25,32:25:900:32:1148:-86.4711,0,-64.1623	0/1:55:20,35:20:698:35:1260:-97.1488,0,-46.5848	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:105:105,0:105:3714:0:0:0,-31.6081,-334.144	0/1:30:22,8:22:792:8:288:-17.2365,0,-62.5748	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.888	0/1:95:50,45:50:1796:45:1609:-116.501,0,-133.324	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:161:68,93:68:2420:93:3344:-252.71,0,-169.591	0/0:105:103,2:103:3670:2:72:0,-24.7714,-323.667	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.651	0/1:103:35,68:35:1260:68:2440:-188.849,0,-82.6994	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.329	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1277	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:50:49,1:49:1748:1:36:0,-11.4532,-154.006	0/0:20:19,1:19:684:1:36:0,-2.42232,-58.2921	0/1:62:24,38:24:856:38:1356:-103.657,0,-58.6972	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:135:135,0:135:4776:0:0:0,-40.639,-430.001	0/1:107:47,60:47:1675:60:2152:-161.737,0,-118.826	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:87:86,1:86:3084:1:36:0,-22.5913,-274.189	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:99:42,57:42:1491:57:2031:-153.26,0,-104.682	0/0:92:92,0:92:3287:0:0:0,-27.6948,-296.049	0/1:217:107,110:107:3814:110:3934:-288.926,0,-278.134	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.711	0/1:67:39,28:39:1396:28:1004:-70.5069,0,-105.77	0/0:54:54,0:54:1918:0:0:0,-16.2556,-172.896	0/1:156:84,72:84:3004:72:2583:-185.757,0,-223.631	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:67:35,32:35:1247:32:1152:-83.8211,0,-92.3651	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.191	0/1:25:9,16:9:324:16:572:-44.2877,0,-21.9801	0/1:66:39,27:39:1374:27:972:-67.9299,0,-104.089	0/1:68:28,40:28:1000:40:1440:-109.428,0,-69.8453	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:147:147,0:147:5228:0:0:0,-44.2514,-470.657
chr10	244971	.	G	A	66006.3	PASS	AB=0.487169;ABP=6.35388;AC=134;AF=0.72043;AN=186;AO=3169;CIGAR=1X;DP=4369;DPB=4369;DPRA=0;EPP=6884.41;EPPR=2604.43;GTI=0;LEN=1;MEANALT=1.02151;MQM=59.3566;MQMR=59.9649;NS=93;NUMALT=1;ODDS=0.414934;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113606;QR=42811;RO=1198;RPL=0;RPP=6884.41;RPPR=2604.43;RPR=3169;RUN=1;SAF=3169;SAP=6884.41;SAR=0;SRF=1198;SRP=2604.43;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:16,11:16:576:11:392:-27.484,0,-44.0472	1/1:34:0,34:0:0:34:1224:-110.459,-10.235,0	0/1:80:49,30:49:1745:30:1080:-72.6101,0,-133.227	0/1:73:34,39:34:1220:39:1400:-104.293,0,-88.1293	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:22:6,16:6:216:16:576:-45.5359,0,-13.1679	0/1:65:31,34:31:1112:34:1220:-90.5399,0,-80.8244	0/1:59:36,23:36:1296:23:824:-56.7062,0,-99.1832	0/1:49:20,29:20:720:29:1044:-79.5243,0,-50.3783	0/1:40:14,26:14:504:26:932:-72.1553,0,-33.656	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:47:17,30:17:612:30:1072:-82.4838,0,-41.265	1/1:40:0,40:0:0:40:1432:-129.169,-12.0412,0	1/1:41:0,41:0:0:41:1453:-131.007,-12.3422,0	1/1:36:0,36:0:0:36:1296:-116.931,-10.8371,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	0/1:25:12,13:12:432:13:464:-34.5685,0,-31.6954	0/1:86:43,43:43:1529:43:1536:-112.614,0,-112.013	0/1:79:31,48:31:1089:48:1709:-130.274,0,-74.5336	0/1:40:27,13:27:968:13:468:-30.4102,0,-75.3962	0/1:51:28,23:28:1008:23:816:-58.3181,0,-75.6838	0/1:27:8,19:8:288:19:684:-53.7115,0,-18.1396	0/1:42:22,20:22:788:20:720:-52.457,0,-58.6015	1/1:127:1,126:1:36:126:4524:-403.4,-34.6325,0	1/1:123:0,123:0:0:123:4404:-396.046,-37.0267,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:107:56,51:56:2008:51:1828:-132.538,0,-148.783	1/1:70:0,70:0:0:70:2514:-226.481,-21.0721,0	1/1:86:0,86:0:0:86:3092:-278.432,-25.8886,0	1/1:9:0,9:0:0:9:316:-28.7785,-2.70927,0	0/1:17:12,5:12:432:5:180:-11.3635,0,-34.1037	1/1:6:0,6:0:0:6:216:-19.7822,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.7361,-3.0103,0	1/1:13:0,13:0:0:13:457:-41.4448,-3.91339,0	1/1:89:0,89:0:0:89:3188:-286.806,-26.7917,0	0/1:73:41,32:41:1438:32:1152:-81.9728,0,-107.737	1/1:18:0,18:0:0:18:644:-58.1561,-5.41854,0	.:.:.:.:.:.:.:.	0/1:85:28,57:28:970:57:2044:-158.416,0,-62.0201	0/1:24:19,5:19:680:5:180:-9.2984,0,-54.3044	0/1:64:27,37:27:957:37:1332:-100.874,0,-67.1779	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	1/1:30:0,30:0:0:30:1080:-97.5062,-9.0309,0	1/1:39:0,39:0:0:39:1388:-124.587,-11.7402,0	1/1:43:0,43:0:0:43:1529:-137.877,-12.9443,0	0/1:65:43,22:43:1533:22:792:-52.0364,0,-118.694	1/1:44:0,44:0:0:44:1584:-142.849,-13.2453,0	0/1:47:28,19:28:1000:19:672:-46.6561,0,-76.1624	1/1:70:0,70:0:0:70:2493:-224.371,-21.0721,0	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:49:28,21:28:996:21:756:-53.4505,0,-75.2044	0/1:38:17,21:17:612:21:752:-56.5671,0,-43.9743	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	1/1:73:0,73:0:0:73:2611:-234.689,-21.9752,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:16:14,2:14:500:2:72:-2.02024,0,-40.5197	1/1:66:0,66:0:0:66:2372:-213.576,-19.868,0	0/1:81:29,51:29:1044:51:1832:-140.711,0,-69.8326	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:64:26,38:26:928:38:1360:-103.435,0,-64.5723	1/1:118:0,118:0:0:118:4224:-379.173,-35.5215,0	1/1:41:0,41:0:0:41:1460:-131.581,-12.3422,0	1/1:27:0,27:0:0:27:968:-87.4327,-8.12781,0	0/1:81:47,34:47:1688:34:1220:-85.7187,0,-127.823	1/1:114:0,114:0:0:114:4080:-367.337,-34.3174,0	0/1:12:4,8:4:140:8:288:-22.655,0,-9.33222	1/1:24:0,24:0:0:24:860:-77.7137,-7.22472,0	1/1:48:0,48:0:0:48:1712:-154.288,-14.4494,0	1/1:38:0,38:0:0:38:1368:-123.33,-11.4391,0	0/1:99:58,41:58:2069:41:1464:-102.072,0,-156.677	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:104:0,104:0:0:104:3736:-335.772,-31.3071,0	0/1:56:21,35:21:741:35:1252:-96.1121,0,-50.1539	1/1:42:0,42:0:0:42:1500:-135.278,-12.6433,0	1/1:46:0,46:0:0:46:1648:-148.6,-13.8474,0	0/1:15:9,6:9:316:6:216:-15.2751,0,-24.2634	0/1:42:27,15:27:968:15:540:-36.2933,0,-74.7941	1/1:51:0,51:0:0:51:1836:-165.496,-15.3525,0	0/1:115:70,45:70:2512:45:1616:-110.991,0,-191.695	1/1:33:0,33:0:0:33:1188:-107.226,-9.93399,0	0/1:39:25,14:25:896:14:504:-33.9579,0,-69.2202	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:51:19,32:19:676:32:1148:-88.2726,0,-45.8155	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:27:13,14:13:468:14:504:-37.4672,0,-34.3318	1/1:45:0,45:0:0:45:1616:-145.538,-13.5464,0	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/1:72:35,37:35:1260:37:1332:-98.3662,0,-92.0313	0/1:30:19,11:19:680:11:396:-26.9495,0,-52.4959	1/1:88:0,88:0:0:88:3164:-284.847,-26.4906,0	1/1:47:0,47:0:0:47:1692:-152.562,-14.1484,0
chr10	263971	.	C	T	34204.1	PASS	AB=0.476202;ABP=24.1982;AC=54;AF=0.290323;AN=186;AO=2061;CIGAR=1X;DP=7936;DPB=7936;DPRA=1.03278;EPP=4366.21;EPPR=12641.2;GTI=1;LEN=1;MEANALT=1.05455;MQM=59.9879;MQMR=59.99;NS=93;NUMALT=1;ODDS=1.08667;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73346;QR=209120;RO=5872;RPL=2048;RPP=4366.21;RPPR=12641.2;RPR=13;RUN=1;SAF=2061;SAP=4478.41;SAR=0;SRF=5872;SRP=12753.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:29,15:29:1031:15:536:-35.3295,0,-79.8573	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/1:104:56,48:56:1987:48:1720:-123.778,0,-147.797	0/1:152:76,76:76:2712:76:2689:-196.498,0,-198.438	0/1:68:34,34:34:1215:34:1186:-86.5692,0,-89.1857	0/1:21:17,4:17:608:4:144:-6.99199,0,-48.7304	0/1:44:18,26:18:640:26:932:-70.9535,0,-44.684	0/1:111:64,46:64:2268:46:1628:-113.333,0,-170.907	0/1:86:44,42:44:1584:42:1495:-108.952,0,-116.963	0/1:66:29,37:29:1040:37:1324:-99.5937,0,-74.0455	0/1:77:44,33:44:1576:33:1172:-82.6058,0,-118.952	0/1:136:66,70:66:2340:70:2500:-184.313,0,-169.917	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842	0/1:43:26,17:26:919:17:608:-42.1077,0,-70.0819	0/1:36:21,15:21:756:15:540:-38.0995,0,-57.5301	0/1:65:36,29:36:1283:29:1011:-71.7335,0,-96.2057	0/1:108:69,39:69:2468:39:1396:-93.4275,0,-189.863	0/1:108:50,58:50:1779:58:2076:-154.599,0,-127.881	0/1:76:21,55:21:739:55:1964:-154.157,0,-43.9541	0/1:97:51,46:51:1824:46:1620:-116.886,0,-135.241	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/1:70:36,33:36:1280:33:1168:-84.3935,0,-94.4697	0/0:221:221,0:221:7874:0:0:0,-66.5276,-708.679	0/0:187:187,0:187:6666:0:0:0,-56.2926,-600.02	0/1:38:21,17:21:748:17:604:-43.2515,0,-56.2062	0/1:212:99,113:99:3521:113:4035:-299.521,0,-253.281	0/0:51:51,0:51:1796:0:0:0,-15.3525,-161.919	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.009	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:283:283,0:283:10045:0:0:0,-85.1915,-903.986	0/1:59:21,38:21:732:38:1347:-103.769,0,-48.4379	0/0:71:71,0:71:2541:0:0:0,-21.3731,-228.939	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:64:44,20:44:1572:20:704:-44.418,0,-122.506	0/1:47:22,25:22:788:25:900:-67.1726,0,-57.0964	0/1:215:124,91:124:4419:91:3246:-227.641,0,-333.162	0/1:78:41,37:41:1463:37:1313:-94.9894,0,-108.485	0/0:97:97,0:97:3411:0:0:0,-29.1999,-307.203	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/0:121:121,0:121:4315:0:0:0,-36.4246,-388.527	0/1:123:57,66:57:2024:66:2352:-174.912,0,-145.406	0/0:66:66,0:66:2332:0:0:0,-19.868,-210.138	0/1:129:82,47:82:2921:47:1675:-112.204,0,-224.254	0/0:80:80,0:80:2837:0:0:0,-24.0824,-255.568	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:104:52,52:52:1864:52:1852:-135.653,0,-136.732	0/1:28:17,11:17:603:11:392:-27.1912,0,-46.1707	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/0:116:116,0:116:4093:0:0:0,-34.9195,-368.557	0/1:58:39,19:39:1392:19:668:-42.9859,0,-108.119	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:2,9:2:72:9:305:-24.4659,0,-3.52539	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:107:50,57:50:1781:57:2022:-150.041,0,-128.361	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:139:75,64:75:2679:64:2288:-164.337,0,-199.512	0/0:138:138,0:138:4936:0:0:0,-41.5421,-444.391	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:150:86,64:86:3028:64:2276:-159.948,0,-227.595	0/0:176:175,1:175:6232:1:36:0,-49.383,-557.376	0/1:88:36,52:36:1284:52:1844:-139.75,0,-89.3728	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.6	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.74	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:90:46,44:46:1648:44:1568:-114.319,0,-121.516	0/0:71:71,0:71:2523:0:0:0,-21.3731,-227.322	0/0:138:138,0:138:4889:0:0:0,-41.5421,-440.163	0/1:139:72,67:72:2567:67:2383:-172.884,0,-189.437	0/0:102:100,1:100:3560:1:36:0,-27.1656,-317.012	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:69:39,30:39:1388:30:1080:-76.7422,0,-104.448	0/0:76:76,0:76:2703:0:0:0,-22.8783,-243.514	0/1:130:75,55:75:2684:55:1972:-138.621,0,-202.671	0/0:85:85,0:85:3011:0:0:0,-25.5875,-271.22	0/1:111:58,53:58:2080:53:1868:-134.982,0,-154.056	0/0:77:77,0:77:2734:0:0:0,-23.1793,-246.303	0/1:172:89,83:89:3163:83:2964:-215.217,0,-233.116	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.484	0/1:96:52,44:52:1857:44:1568:-112.513,0,-138.509	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.978	0/1:47:28,19:28:991:19:680:-47.3808,0,-75.3551	0/1:137:84,53:84:2993:53:1883:-128.507,0,-228.36	0/1:104:35,69:35:1252:69:2448:-189.269,0,-81.678	0/0:133:133,0:133:4736:0:0:0,-40.037,-426.399	0/0:163:162,1:162:5757:1:36:0,-45.4696,-514.651
chr10	271375	.	A	T	89183	PASS	AB=0.485151;ABP=10.1039;AC=136;AF=0.723404;AN=188;AO=4436;CIGAR=1X;DP=6346;DPB=6346;DPRA=0;EPP=9635.66;EPPR=4144.01;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9711;MQMR=59.9864;NS=94;NUMALT=1;ODDS=0.225606;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156673;QR=68257;RO=1907;RPL=4436;RPP=9635.66;RPPR=4144.01;RPR=0;RUN=1;SAF=0;SAP=9635.66;SAR=4436;SRF=0;SRP=4144.01;SRR=1907;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:27,24:27:960:24:834:-60.0206,0,-71.3637	1/1:36:0,36:0:0:36:1265:-114.151,-10.8371,0	0/1:44:22,22:22:784:22:782:-57.4579,0,-57.6386	0/1:240:117,123:117:4169:123:4335:-318.076,0,-303.145	0/1:73:32,41:32:1148:41:1449:-108.729,0,-81.6546	0/1:48:21,27:21:752:27:941:-70.5522,0,-53.5568	0/1:122:54,68:54:1928:68:2421:-181.419,0,-137.071	0/1:114:57,57:57:2029:57:1980:-144.15,0,-148.563	0/1:76:37,39:37:1332:39:1354:-99.2759,0,-97.3041	0/1:93:39,53:39:1404:53:1893:-142.581,0,-98.6047	0/1:39:21,18:21:752:18:636:-45.8279,0,-56.2661	0/1:58:32,26:32:1148:26:913:-65.0243,0,-86.1701	1/1:68:0,68:0:0:68:2421:-218.145,-20.47,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	1/1:32:0,32:0:0:32:1122:-101.284,-9.63296,0	0/1:63:38,25:38:1368:25:870:-59.6471,0,-104.456	0/1:53:34,19:34:1220:19:665:-44.2182,0,-94.1522	0/1:38:15,23:15:540:23:809:-61.6892,0,-37.4974	0/1:86:45,41:45:1612:41:1446:-104.543,0,-119.481	0/1:120:58,62:58:2076:62:2211:-163.131,0,-150.987	0/1:78:57,21:57:2040:21:756:-44.8869,0,-160.392	0/1:73:27,46:27:968:46:1648:-126.633,0,-65.4622	0/1:104:47,57:47:1680:57:2037:-152.293,0,-120.18	0/1:43:22,21:22:792:21:741:-54.0673,0,-58.6614	1/1:254:0,254:0:0:254:8947:-805.208,-76.4616,0	1/1:151:0,151:0:0:151:5335:-480.282,-45.4555,0	0/1:23:12,11:12:428:11:386:-28.1521,0,-31.9351	0/1:168:89,78:89:3184:78:2732:-195.526,0,-236.192	1/1:24:0,24:0:0:24:830:-75.0077,-7.22472,0	1/1:114:0,114:0:0:114:4047:-364.415,-34.3174,0	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:12:0,12:0:0:12:409:-37.1354,-3.61236,0	1/1:149:0,149:0:0:149:5336:-480.373,-44.8535,0	0/1:72:35,37:35:1256:37:1313:-96.7931,0,-91.6711	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:94:50,44:50:1788:44:1576:-113.835,0,-132.906	0/1:35:22,13:22:792:13:468:-31.9236,0,-61.0696	0/1:108:55,53:55:1964:53:1859:-135.073,0,-144.524	0/1:70:39,31:39:1404:31:1108:-78.9589,0,-105.587	1/1:49:1,48:1:32:48:1698:-149.903,-11.5512,0	1/1:51:0,51:0:0:51:1806:-162.818,-15.3525,0	1/1:83:0,83:0:0:83:2931:-264.008,-24.9855,0	0/1:104:50,54:50:1792:54:1905:-140.419,0,-130.255	1/1:69:0,69:0:0:69:2457:-221.383,-20.7711,0	0/1:204:94,110:94:3369:110:3854:-285.642,0,-242.014	1/1:129:0,129:0:0:129:4534:-408.226,-38.8329,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:28:13,15:13:449:15:521:-38.7793,0,-32.3086	0/1:35:12,23:12:432:23:798:-61.598,0,-28.6851	0/1:10:8,2:8:284:2:68:-3.44741,0,-22.8931	1/1:143:0,143:0:0:143:5046:-454.283,-43.0473,0	0/1:18:8,10:8:288:10:345:-25.9623,0,-20.8489	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	1/1:45:0,45:0:0:45:1563:-140.955,-13.5464,0	0/1:75:45,30:45:1612:30:1057:-72.8617,0,-122.793	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:107:51,56:51:1820:56:1973:-145.63,0,-131.871	1/1:112:0,112:0:0:112:3982:-358.483,-33.7154,0	1/1:33:0,33:0:0:33:1154:-104.162,-9.93399,0	1/1:77:0,77:0:0:77:2723:-245.309,-23.1793,0	0/1:79:44,35:44:1564:35:1196:-84.1528,0,-117.27	1/1:46:0,46:0:0:46:1607:-144.643,-13.8474,0	0/1:27:10,17:10:360:17:604:-46.5628,0,-24.6165	1/1:39:0,39:0:0:39:1374:-123.955,-11.7402,0	1/1:43:0,43:0:0:43:1514:-136.549,-12.9443,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:71:39,32:39:1385:32:1137:-81.2634,0,-103.574	1/1:49:0,49:0:0:49:1727:-155.713,-14.7505,0	1/1:104:0,104:0:0:104:3653:-328.841,-31.3071,0	0/1:131:76,55:76:2728:55:1945:-135.888,0,-206.328	1/1:105:0,105:0:0:105:3710:-334.101,-31.6082,0	1/1:62:2,60:2:72:60:2130:-185.123,-11.8271,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:69:36,33:36:1292:33:1188:-86.4575,0,-95.8127	1/1:73:0,73:0:0:73:2556:-230.285,-21.9752,0	0/1:166:100,66:100:3584:66:2357:-162.416,0,-272.605	1/1:67:0,67:0:0:67:2336:-210.494,-20.169,0	0/1:52:28,24:28:1004:24:860:-62.0683,0,-75.0223	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	0/1:120:68,51:68:2432:51:1753:-121.862,0,-182.953	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:44:27,17:27:972:17:612:-42.1681,0,-74.5526	1/1:51:0,51:0:0:51:1772:-159.755,-15.3525,0	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/1:55:28,27:28:1004:27:948:-69.0752,0,-74.1192	0/1:49:24,25:24:864:25:892:-65.8492,0,-63.3321	1/1:36:0,36:0:0:36:1281:-115.591,-10.8371,0	1/1:93:0,93:0:0:93:3305:-297.669,-27.9958,0
chr10	307854	.	A	G	112143	PASS	AB=0.440018;ABP=142.638;AC=132;AF=0.709677;AN=186;AO=5525;CIGAR=1X;DP=8041;DPB=8041;DPRA=88.3407;EPP=12000.4;EPPR=5459.92;GTI=1;LEN=1;MEANALT=1.03297;MQM=59.9037;MQMR=59.9562;NS=93;NUMALT=1;ODDS=0.694417;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196032;QR=90026;RO=2513;RPL=5525;RPP=12000.4;RPPR=5451.24;RPR=0;RUN=1;SAF=5525;SAP=12000.4;SAR=0;SRF=2512;SRP=5451.24;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:17,26:17:604:26:919:-70.0819,0,-41.7463	1/1:104:1,103:1:36:103:3639:-324.118,-27.7088,0	0/1:135:79,56:79:2836:56:1986:-138.373,0,-214.81	0/1:181:102,79:102:3664:79:2811:-198.743,0,-275.476	0/1:60:28,32:28:1004:32:1144:-85.2077,0,-72.6141	0/1:41:18,23:18:640:23:811:-60.9677,0,-45.5871	0/1:141:72,69:72:2584:69:2464:-179.569,0,-190.364	0/1:153:68,85:68:2416:85:2965:-220.963,0,-171.637	0/1:48:22,26:22:792:26:932:-69.7494,0,-57.1553	0/1:75:35,40:35:1252:40:1410:-104.6,0,-90.4078	0/1:66:31,35:31:1112:35:1243:-92.3053,0,-80.5234	0/1:87:47,40:47:1688:40:1422:-102.076,0,-126.017	1/1:63:0,63:0:0:63:2202:-198.442,-18.9649,0	1/1:63:0,63:0:0:63:2239:-201.771,-18.9649,0	1/1:65:0,65:0:0:65:2314:-208.519,-19.567,0	1/1:51:1,50:1:36:50:1788:-157.604,-11.7543,0	0/1:63:32,31:32:1143:31:1112:-81.4265,0,-84.2138	0/1:55:34,21:34:1220:21:735:-49.9104,0,-93.5502	0/1:40:18,22:18:644:22:784:-58.8427,0,-46.2494	0/1:210:117,93:117:4204:93:3340:-237.6,0,-315.323	0/1:97:48,49:48:1724:49:1736:-127.325,0,-126.245	0/1:105:66,39:66:2368:39:1383:-93.1599,0,-181.77	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:70:46,24:46:1656:24:856:-56.289,0,-128.256	0/1:57:29,28:29:1040:28:982:-71.533,0,-76.7557	1/1:343:0,343:0:0:343:12209:-1098.51,-103.253,0	1/1:219:0,218:0:0:218:7726:-694.991,-65.6245,0	0/1:37:23,14:23:828:14:500:-34.1981,0,-63.706	0/1:211:122,89:122:4361:89:3149:-220.108,0,-329.146	1/1:120:0,120:0:0:120:4266:-384.12,-36.1236,0	1/1:104:0,104:0:0:104:3724:-335.361,-31.3071,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:171:0,171:0:0:171:6066:-546.043,-51.4761,0	0/1:206:109,97:109:3912:97:3419:-245.91,0,-290.256	1/1:70:0,70:0:0:70:2485:-223.808,-21.0721,0	.:.:.:.:.:.:.:.	0/1:133:71,62:71:2535:62:2220:-160.023,0,-188.364	0/1:40:26,14:26:936:14:482:-31.6184,0,-72.5183	0/1:98:48,50:48:1698:50:1780:-130.982,0,-123.604	0/1:65:41,24:41:1459:24:864:-58.5156,0,-112.038	1/1:55:0,55:0:0:55:1940:-174.873,-16.5567,0	1/1:71:0,71:0:0:71:2548:-229.484,-21.3731,0	1/1:167:0,167:0:0:167:5893:-530.485,-50.272,0	0/1:136:80,56:80:2864:56:1995:-138.875,0,-217.057	1/1:85:0,85:0:0:85:3018:-271.852,-25.5876,0	0/1:81:49,32:49:1760:32:1148:-79.2464,0,-134.3	1/1:171:3,167:3:108:167:5904:-521.4,-41.4598,0	0/1:10:6,4:6:216:4:142:-10.1189,0,-16.7802	0/1:148:87,61:87:3124:61:2175:-151.457,0,-236.764	0/1:26:17,9:17:608:9:309:-20.3139,0,-47.2252	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	0/1:30:21,9:21:756:9:320:-20.1115,0,-59.2499	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:24:7,17:7:252:17:600:-47.1045,0,-15.8042	1/1:45:0,45:0:0:45:1608:-144.88,-13.5464,0	0/1:102:61,41:61:2183:41:1437:-98.9185,0,-166.03	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:166:122,44:122:4364:44:1576:-92.1606,0,-342.964	1/1:160:3,157:3:108:157:5614:-495.298,-38.0896,0	1/1:60:0,60:0:0:60:2126:-191.603,-18.0618,0	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	0/1:124:62,62:62:2224:62:2207:-161.567,0,-163.096	1/1:148:1,147:1:36:147:5201:-464.622,-40.9542,0	0/1:28:21,7:21:752:7:252:-14.6001,0,-59.5774	1/1:100:0,100:0:0:100:3520:-317,-30.103,0	1/1:78:0,78:0:0:78:2736:-246.481,-23.4803,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:152:75,77:75:2679:77:2755:-202.434,0,-195.598	1/1:55:0,55:0:0:55:1963:-176.941,-16.5567,0	1/1:161:0,161:0:0:161:5726:-515.321,-48.4658,0	0/1:147:91,56:91:3276:56:1973:-133.59,0,-250.03	1/1:97:0,97:0:0:97:3446:-310.309,-29.1999,0	1/1:78:0,78:0:0:78:2788:-251.161,-23.4803,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:89:46,43:46:1652:43:1528:-111.021,0,-122.177	1/1:81:0,80:0:0:80:2844:-255.838,-24.0824,0	0/1:182:93,89:93:3340:89:3171:-230.826,0,-246.018	1/1:88:0,88:0:0:88:3101:-279.314,-26.4906,0	0/1:64:45,19:45:1616:19:660:-40.4555,0,-126.459	1/1:74:0,74:0:0:74:2594:-233.706,-22.2762,0	0/1:124:67,57:67:2408:57:2043:-146.814,0,-179.648	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:62:39,23:39:1392:23:794:-53.1074,0,-106.915	1/1:80:0,80:0:0:80:2797:-251.961,-24.0824,0	0/1:55:37,18:37:1332:18:640:-41.3727,0,-103.626	0/1:116:69,47:69:2455:47:1644:-113.325,0,-186.284	0/1:54:41,13:41:1449:13:468:-26.1978,0,-114.448	1/1:70:0,70:0:0:70:2468:-222.373,-21.0721,0	1/1:88:0,88:0:0:88:3102:-279.398,-26.4906,0
chr10	382835	.	G	A	21831.2	PASS	AB=0.52438;ABP=15.928;AC=53;AF=0.281915;AN=188;AO=1317;CIGAR=1X;DP=4304;DPB=4304;DPRA=1.15711;EPP=2862.84;EPPR=6482.68;GTI=0;LEN=1;MEANALT=1.05357;MQM=59.9704;MQMR=60;NS=94;NUMALT=1;ODDS=0.972851;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46670;QR=106077;RO=2984;RPL=1317;RPP=2862.84;RPPR=6482.68;RPR=0;RUN=1;SAF=1317;SAP=2862.84;SAR=0;SRF=2984;SRP=6482.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:17,20:17:596:20:708:-52.9075,0,-42.8297	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:79:39,40:39:1364:40:1420:-104.316,0,-99.2743	0/1:80:33,47:33:1180:47:1661:-125.694,0,-82.4256	0/1:18:9,9:9:309:9:324:-24.0873,0,-22.7222	0/1:27:19,8:19:684:8:272:-16.6811,0,-53.7625	0/1:74:39,35:39:1400:35:1233:-88.9959,0,-104.023	0/1:70:29,41:29:1036:41:1452:-109.904,0,-72.4818	0/1:36:22,14:22:788:14:504:-34.861,0,-60.4077	0/1:52:28,24:28:991:24:851:-61.2565,0,-73.85	0/1:29:17,12:17:599:12:424:-29.7665,0,-45.5082	0/1:41:14,27:14:483:27:964:-74.7346,0,-31.4551	0/0:31:31,0:31:1099:0:0:0,-9.33193,-99.2195	0/0:31:31,0:31:1096:0:0:0,-9.33193,-98.9499	0/0:21:21,0:21:710:0:0:0,-6.32163,-64.2119	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:19:11,8:11:384:8:280:-19.8197,0,-29.1751	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:15:4,11:4:144:11:392:-31.1046,0,-8.79817	0/1:105:56,49:56:1965:49:1732:-124.554,0,-145.513	0/1:45:16,29:16:563:29:1028:-79.2633,0,-37.4528	0/1:68:15,53:15:536:53:1891:-149.77,0,-28.1048	0/1:42:23,19:23:828:19:676:-48.5247,0,-62.2009	0/1:39:26,13:26:936:13:464:-30.3573,0,-72.8193	0/1:52:22,30:22:788:30:1053:-79.425,0,-55.5912	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.817	0/0:112:112,0:112:4013:0:0:0,-33.7154,-361.357	0/1:8:4,4:4:140:4:136:-10.1673,0,-10.5363	0/1:143:67,75:67:2393:75:2672:-197.62,0,-172.519	0/0:43:43,0:43:1527:0:0:0,-12.9443,-137.722	0/0:44:44,0:44:1557:0:0:0,-13.2453,-140.42	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:14:9,5:9:320:5:176:-11.9706,0,-24.9279	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/0:76:76,0:76:2651:0:0:0,-22.8783,-238.834	0/1:90:43,47:43:1544:47:1676:-124.034,0,-112.16	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:73:29,44:29:1044:44:1549:-117.725,0,-72.2996	0/1:22:9,13:9:311:13:459:-35.0214,0,-21.7011	0/1:85:35,50:35:1248:50:1784:-135.255,0,-87.0373	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/0:17:17,0:17:586:0:0:0,-5.11751,-53.0628	0/0:64:61,2:61:2192:2:72:0,-12.3881,-190.756	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:61:31,30:31:1104:30:1076:-78.79,0,-81.3078	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:54:35,18:35:1230:18:644:-41.9763,0,-94.6883	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:88:45,43:45:1616:43:1532:-111.682,0,-119.239	0/1:60:20,40:20:716:40:1410:-109.132,0,-46.7059	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.939	0/1:38:15,23:15:528:23:812:-61.9618,0,-36.4122	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/1:68:28,40:28:995:40:1412:-106.906,0,-69.394	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:62:26,36:26:917:36:1269:-95.8469,0,-64.1807	0/0:72:72,0:72:2577:0:0:0,-21.6742,-232.177	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/1:97:46,51:46:1648:51:1778:-131.1,0,-119.409	0/0:94:92,2:92:3288:2:68:0,-21.8391,-289.682	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/0:44:44,0:44:1543:0:0:0,-13.2453,-139.158	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:94:49,45:49:1744:45:1578:-114.011,0,-128.948	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/0:72:72,0:72:2561:0:0:0,-21.6742,-230.739	0/1:53:22,31:22:792:31:1100:-83.3557,0,-55.6511	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:53:52,1:52:1840:1:36:0,-12.3563,-162.279	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:42:28,14:28:996:14:500:-32.6929,0,-77.3116	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.07	0/1:106:55,51:55:1952:51:1812:-131.452,0,-144.044	0/0:57:57,0:57:1986:0:0:0,-17.1587,-179.011	0/1:30:14,16:14:487:16:560:-41.6978,0,-35.1283	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:50:29,21:29:1031:21:734:-51.3305,0,-78.0511	0/0:20:20,0:20:695:0:0:0,-6.0206,-62.8714	0/1:34:17,17:17:591:17:608:-44.817,0,-43.2802	0/0:37:37,0:37:1306:0:0:0,-11.1381,-117.84	0/1:22:9,13:9:320:13:456:-34.7506,0,-22.5197	0/1:55:26,29:26:907:29:1024:-75.9159,0,-65.3877	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549
chr10	387030	.	A	G	575883	PASS	AB=0.507652;ABP=13.0795;AC=135;AF=0.718085;AN=188;AO=27646;CIGAR=1X;DP=37441;DPB=37441;DPRA=0;EPP=60018.2;EPPR=21246.5;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.9809;MQMR=59.9939;NS=94;NUMALT=1;ODDS=1.10759;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=985575;QR=343765;RO=9787;RPL=27644;RPP=60018.2;RPPR=21246.5;RPR=2;RUN=1;SAF=27646;SAP=60035.5;SAR=0;SRF=9787;SRP=21255.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:11,28:11:392:28:995:-78.1238,0,-23.8799	1/1:84:0,84:0:0:84:2986:-268.97,-25.2865,0	0/1:165:72,93:72:2540:93:3265:-244.399,0,-179.183	0/1:266:144,122:144:5010:122:4353:-311.842,0,-370.984	0/1:115:56,59:56:1961:59:2107:-155.279,0,-142.145	0/1:85:42,43:42:1461:43:1529:-112.314,0,-106.195	0/1:104:56,48:56:1945:48:1712:-123.059,0,-144.017	0/1:191:90,101:90:3152:101:3600:-266.708,0,-226.411	0/1:74:34,40:34:1161:40:1440:-107.622,0,-82.5123	0/1:93:35,58:35:1236:58:2076:-159.115,0,-83.5485	0/1:457:246,211:246:8658:211:7524:-539.632,0,-641.656	0/1:88:47,41:47:1642:41:1464:-105.565,0,-121.576	1/1:38:0,38:0:0:38:1347:-121.529,-11.4391,0	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	1/1:41:0,41:0:0:41:1439:-129.803,-12.3422,0	1/1:83:0,83:0:0:83:2942:-264.927,-24.9855,0	0/1:41:18,23:18:628:23:828:-62.5019,0,-44.5032	0/1:25:14,11:14:496:11:396:-28.457,0,-37.4485	0/1:149:58,91:58:2024:91:3215:-244.72,0,-137.577	0/1:169:94,75:94:3308:75:2683:-190.84,0,-247.069	0/1:133:58,75:58:2019:75:2687:-202.037,0,-141.946	0/1:159:104,55:104:3621:55:1951:-128,0,-278.239	0/1:172:84,88:84:2928:88:3141:-231.137,0,-211.981	0/1:27:15,12:15:515:12:432:-31.0934,0,-38.5472	0/1:115:52,63:52:1807:63:2243:-167.515,0,-128.293	1/1:366:2,364:2:68:364:12980:-1161.56,-103.719,0	1/1:595:1,594:1:36:594:21101:-1894.78,-175.515,0	0/1:21:6,15:6:208:15:536:-42.2532,0,-12.7375	0/1:316:150,166:150:5251:166:5925:-438.233,0,-377.61	1/1:261:0,261:0:0:261:9304:-837.329,-78.5688,0	1/1:126:0,126:0:0:126:4464:-401.93,-37.9298,0	1/1:2049:8,2040:8:288:2040:72802:-6523.22,-590.522,0	0/1:1812:936,876:936:32928:876:31305:-2271.02,0,-2417.12	1/1:894:1,893:1:36:893:31780:-2855.63,-265.523,0	1/1:2728:6,2721:6:208:2721:96912:-8699.24,-802.131,0	1/1:3614:11,3603:11:392:3603:128320:-11508.1,-1052.3,0	1/1:97:0,97:0:0:97:3463:-311.882,-29.1999,0	0/1:251:104,147:104:3635:147:5276:-399.416,0,-251.801	1/1:325:0,325:0:0:325:11550:-1039.38,-97.8348,0	0/1:1340:635,705:635:22354:705:25196:-1863.5,0,-1607.95	0/1:218:92,126:92:3200:126:4495:-339.095,0,-222.604	0/1:173:80,93:80:2810:93:3324:-247.3,0,-201.064	0/1:211:119,92:119:4127:92:3304:-234.061,0,-308.105	0/1:45:20,25:20:707:25:896:-67.414,0,-50.4082	1/1:42:0,42:0:0:42:1492:-134.573,-12.6433,0	1/1:105:0,105:0:0:105:3733:-336.171,-31.6082,0	1/1:156:4,152:4:144:152:5418:-474.438,-33.6471,0	0/1:199:80,119:80:2790:119:4228:-320.791,0,-191.436	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	0/1:210:95,115:95:3291:115:4113:-307.139,0,-233.199	1/1:144:1,143:1:36:143:5099:-455.455,-39.75,0	0/1:2069:993,1075:993:34913:1075:38335:-2826.01,0,-2518.27	0/1:202:98,104:98:3395:104:3715:-273.744,0,-244.958	0/1:138:68,70:68:2384:70:2512:-184.79,0,-173.278	0/1:1070:524,546:524:18467:546:19400:-1423.45,0,-1339.36	1/1:239:0,239:0:0:239:8486:-763.744,-71.9462,0	0/1:8:2,6:2:72:6:207:-16.5587,0,-4.42848	0/1:1767:855,911:855:29941:911:32512:-2393.09,0,-2161.9	0/1:1949:1023,924:1023:36089:924:32914:-2374.83,0,-2660.49	1/1:130:0,130:0:0:130:4656:-419.202,-39.1339,0	0/1:89:43,46:43:1517:46:1635:-120.646,0,-110.029	1/1:1571:4,1567:4:140:1567:55896:-5015.71,-459.974,0	0/1:155:81,74:81:2864:74:2639:-191.097,0,-211.34	1/1:238:0,238:0:0:238:8454:-760.868,-71.6451,0	1/1:94:0,94:0:0:94:3353:-301.986,-28.2968,0	1/1:102:1,101:1:36:101:3602:-320.787,-27.1068,0	0/1:229:113,116:113:3979:116:4128:-302.768,0,-289.371	1/1:443:3,440:3:104:440:15733:-1405.96,-123.653,0	0/1:499:267,232:267:9449:232:8265:-593.65,0,-700.166	1/1:94:0,94:0:0:94:3366:-303.156,-28.2968,0	1/1:47:0,47:0:0:47:1673:-150.855,-14.1484,0	1/1:1794:0,1793:0:0:1793:64039:-5760.63,-539.747,0	0/1:180:79,100:79:2745:100:3568:-267.085,0,-193.052	1/1:95:0,95:0:0:95:3403:-306.484,-28.5979,0	1/1:233:1,232:1:32:232:8259:-740.121,-66.9407,0	0/1:152:80,72:80:2776:72:2571:-185.883,0,-204.328	1/1:250:0,250:0:0:250:8922:-802.963,-75.2575,0	1/1:114:0,114:0:0:114:4079:-367.296,-34.3174,0	0/1:1543:725,818:725:25421:818:29225:-2164.89,0,-1822.77	0/1:122:63,59:63:2192:59:2105:-152.992,0,-160.822	1/1:88:0,88:0:0:88:3128:-281.746,-26.4906,0	0/1:198:100,98:100:3457:98:3496:-255.055,0,-251.745	1/1:60:0,60:0:0:60:2133:-192.238,-18.0618,0	0/1:61:28,33:28:973:33:1166:-86.8828,0,-69.5172	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:84:46,38:46:1615:38:1360:-97.4141,0,-120.352	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:75:34,41:34:1200:41:1448:-108.039,0,-85.7284	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	0/1:566:251,315:251:8926:315:11228:-839.969,0,-632.947	0/1:1123:581,542:581:20565:542:19314:-1399.76,0,-1512.32	0/1:57:42,15:42:1464:15:536:-31.4161,0,-114.893	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:71:1,70:1:36: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chr10	389833	.	TGAA	TGAT	109259	PASS	AB=0.465042;ABP=46.1276;AC=135;AF=0.718085;AN=188;AO=5159;CIGAR=3M1X;DP=7363;DPB=7362.75;DPRA=13.1846;EPP=10673.6;EPPR=4473.32;GTI=2;LEN=1;MEANALT=1.25806;MQM=59.9767;MQMR=59.9972;NS=94;NUMALT=1;ODDS=0.138633;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=184530;QR=77031;RO=2177;RPL=62;RPP=10673.6;RPPR=4481.77;RPR=5097;RUN=1;SAF=5159;SAP=11205.6;SAR=0;SRF=2176;SRP=4721.62;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:17,17:17:604:17:608:-44.817,0,-44.4559	1/1:133:2,131:2:72:131:4692:-415.603,-33.2003,0	0/1:140:59,81:59:2084:81:2884:-217.645,0,-145.685	0/1:118:60,57:60:2130:57:2048:-149.011,0,-156.388	0/1:85:42,43:42:1487:43:1540:-113.306,0,-108.536	0/1:56:26,30:26:913:30:1074:-80.1147,0,-65.627	0/1:91:53,37:53:1877:37:1324:-92.1555,0,-141.902	0/1:89:55,33:55:1939:33:1188:-80.4556,0,-148.013	0/1:48:26,22:26:921:22:784:-56.4345,0,-68.7569	0/1:55:33,22:33:1161:22:792:-55.049,0,-88.2396	0/1:51:27,24:27:970:24:849:-61.3753,0,-72.2653	0/1:65:36,29:36:1287:29:1025:-72.9937,0,-96.5664	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:55:0,53:0:0:53:1908:-171.638,-15.9546,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:58:34,24:34:1201:24:864:-60.6228,0,-90.9355	0/1:50:15,35:15:539:35:1260:-98.654,0,-33.7947	0/1:42:25,17:25:885:17:612:-42.7702,0,-67.3243	0/1:163:87,75:87:3101:75:2696:-193.757,0,-230.192	0/1:139:63,74:63:2210:74:2652:-197.375,0,-157.613	0/1:144:90,54:90:3190:54:1929:-130.537,0,-243.976	0/1:24:18,6:18:637:6:216:-12.5658,0,-50.4335	0/1:70:33,37:33:1170:37:1324:-98.39,0,-84.5353	0/1:65:33,32:33:1170:32:1125:-81.9891,0,-86.0395	1/1:251:2,249:2:71:249:8873:-791.813,-68.8165,0	1/1:192:0,192:0:0:192:6869:-618.278,-57.7978,0	0/1:30:17,13:17:605:13:464:-33.0666,0,-45.7499	0/1:198:102,95:102:3591:95:3396:-246.309,0,-263.853	1/1:158:1,157:1:36:157:5601:-500.614,-43.9645,0	1/1:61:1,60:1:20:60:2133:-190.237,-16.3629,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:20:9,11:9:322:11:388:-29.2368,0,-23.3037	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:185:0,185:0:0:185:6630:-596.776,-55.6906,0	0/1:196:112,84:112:3979:84:3000:-211.228,0,-299.301	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:136:71,65:71:2544:65:2323:-168.389,0,-188.271	0/1:34:16,18:16:576:18:643:-47.9652,0,-41.94	0/1:79:41,38:41:1462:38:1340:-97.1159,0,-108.094	0/1:39:23,16:23:822:16:572:-40.0733,0,-62.5625	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:90:0,90:0:0:90:3207:-288.85,-27.0927,0	1/1:93:0,92:0:0:92:3296:-296.495,-27.6948,0	0/1:102:53,48:53:1850:48:1728:-125.041,0,-136.014	1/1:86:0,86:0:0:86:3092:-278.421,-25.8886,0	0/1:79:35,44:35:1220:44:1584:-119.07,0,-86.3195	1/1:127:0,127:0:0:127:4508:-405.888,-38.2308,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:175:79,96:79:2773:96:3437:-256.49,0,-197.131	0/1:49:25,24:25:889:24:852:-62.2499,0,-65.5789	0/1:15:13,2:13:466:2:72:-2.32127,0,-37.7633	1/1:88:0,88:0:0:88:3147:-283.455,-26.4906,0	0/1:12:6,6:6:210:6:216:-16.1782,0,-15.6293	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:23:12,11:12:424:11:392:-28.6964,0,-31.5724	1/1:81:0,79:0:0:79:2836:-255.177,-23.7814,0	0/1:116:64,50:64:2251:50:1796:-127.303,0,-168.233	1/1:4:0,1:0:0:1:36:-3.23845,-0.30103,0	0/1:122:70,52:70:2483:52:1860:-130.954,0,-186.998	1/1:142:1,140:1:36:140:4977:-444.438,-39.1768,0	1/1:37:0,36:0:0:36:1288:-115.922,-10.8371,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:134:78,56:78:2714:56:2004:-140.296,0,-204.161	1/1:173:1,172:1:29:172:6126:-548.536,-49.1785,0	0/1:20:8,12:8:288:12:428:-32.8382,0,-20.2468	1/1:80:0,79:0:0:79:2828:-254.508,-23.7814,0	1/1:76:0,76:0:0:76:2719:-244.952,-22.8783,0	1/1:32:0,32:0:0:32:1136:-102.549,-9.63296,0	0/1:120:52,68:52:1857:68:2432:-183.012,0,-131.287	1/1:36:0,36:0:0:36:1272:-114.781,-10.8371,0	1/1:118:0,117:0:0:117:4173:-375.392,-35.2205,0	0/1:137:67,70:67:2354:70:2512:-185.091,0,-170.876	1/1:151:0,151:0:0:151:5389:-485.141,-45.4555,0	1/1:59:1,58:1:35:58:2084:-184.331,-14.2621,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:79:41,35:41:1467:35:1260:-90.4902,0,-109.111	1/1:103:1,102:1:32:102:3656:-326.027,-27.8068,0	0/1:186:121,65:121:4290:65:2336:-154.508,0,-330.288	1/1:90:0,90:0:0:90:3240:-291.82,-27.0927,0	0/1:62:36,26:36:1286:26:919:-64.36,0,-97.3797	1/1:58:1,56:1:25:56:2012:-178.818,-14.9432,0	0/1:108:61,47:61:2144:47:1688:-119.696,0,-160.715	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:47:24,23:24:858:23:828:-60.6957,0,-63.3935	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:21:9,11:9:324:11:396:-29.676,0,-23.1978	0/1:66:29,37:29:1016:37:1332:-100.314,0,-71.8812	0/1:53:43,10:43:1530:10:360:-16.7897,0,-122.038	1/1:105:0,105:0:0:105:3758:-338.42,-31.6082,0	1/1:55:1,54:1:28:54:1940:-172.076,-13.7569,0
chr10	403976	.	ACCC	ATCCA,ATCC	108909	PASS	AB=0.557453,0.438034;ABP=238.054,276.433;AC=89,99;AF=0.473404,0.526596;AN=188;AO=4716,3682;CIGAR=1M1I2M1X,1M1X2M;DP=8435;DPB=9618.75;DPRA=31.1963,0;EPP=44.4506,7877.23;EPPR=11.6962;GTI=10;LEN=5,1;MEANALT=2.35556,2.29787;MQM=21.0208,31.2292;MQMR=37.25;NS=94;NUMALT=2;ODDS=8185.98;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165354,115349;QR=138;RO=4;RPL=4715,28;RPP=10235,7757.02;RPPR=5.18177;RPR=1,3654;RUN=1,1;SAF=2207,14;SAP=45.005,7877.23;SAR=2509,3668;SRF=3;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:15:0,10,4:0:0:10,4:334,120:-18.4472,-8.61893,-5.60863,-9.90038,0,-8.69626	1/2:173:0,120,53:0:0:120,53:4230,1589:-276.352,-110.993,-74.869,-165.601,0,-149.646	1/2:79:0,38,40:0:0:38,40:1339,1187:-125.883,-84.106,-72.6668,-41.8653,0,-29.8241	1/2:145:0,40,104:0:0:40,104:1427,3320:-313.765,-239.433,-227.392,-74.399,0,-43.0919	2/2:66:0,10,56:0:0:10,56:359,1784:-145.458,-129.206,-126.196,-16.8577,-0.380258,0	1/2:43:0,13,30:0:0:13,30:441,892:-80.3244,-63.3953,-59.4819,-17.1343,0,-8.10343	1/2:112:0,45,67:0:0:45,67:1582,2138:-229.228,-151.234,-137.688,-78.2431,0,-58.0741	1/2:87:0,37,50:0:0:37,50:1303,1502:-155.413,-106.942,-95.8043,-48.6884,0,-33.6369	1/2:66:0,37,29:0:0:37,29:1303,866:-103.596,-61.6277,-50.4896,-42.189,0,-33.4592	1/2:60:0,29,31:0:0:29,31:1008,979:-120.539,-70.6696,-61.9397,-50.1233,0,-40.7914	1/2:57:0,33,23:0:0:33,23:1137,738:-109.805,-53.3183,-43.3843,-56.5103,0,-49.5866	1/2:100:0,69,30:0:0:69,30:2400,901:-134.787,-64.209,-43.4379,-70.6294,0,-61.5985	1/1:152:0,135,17:0:0:135,17:4720,512:-184.855,-40.6391,0,-148.482,-4.00797,-143.365	1/2:93:1,70,22:1:36:70,22:2475,694:-151.32,-46.8683,-28.7368,-101.72,0,-98.0372	1/2:146:0,116,30:0:0:116,30:4067,957:-259.491,-69.2641,-34.3446,-190.501,0,-181.47	1/2:111:0,95,14:0:0:95,14:3346,444:-175.977,-32.0594,-3.46151,-144.011,0,-139.797	1/2:75:0,46,28:0:0:46,28:1627,841:-123.281,-59.7496,-45.9022,-63.5695,0,-55.1407	1/2:72:0,41,31:0:0:41,31:1443,927:-120.528,-64.6148,-52.2725,-56.1436,0,-46.8117	1/2:39:0,24,15:0:0:24,15:838,453:-58.4084,-32.4654,-25.2407,-26.1695,0,-21.6541	1/2:92:0,51,41:0:0:51,41:1813,1309:-182.7,-94.6541,-79.3016,-88.3069,0,-75.9647	1/2:97:0,53,43:0:0:53,43:1862,1359:-181.369,-97.8203,-81.8657,-83.6118,0,-70.6675	1/2:40:0,9,31:0:0:9,31:315,968:-87.1769,-69.679,-66.9697,-17.7548,0,-8.42284	1/2:76:0,32,44:0:0:32,44:1140,1405:-154.704,-101.579,-91.9457,-53.3736,0,-40.1283	1/2:68:0,30,38:0:0:30,38:1059,1208:-134.978,-87.2785,-78.2476,-47.9435,0,-36.5043	1/2:40:0,19,21:0:0:19,21:630,672:-76.0635,-48.7614,-43.0418,-27.5414,0,-21.2197	1/2:286:0,143,142:0:0:143,142:5061,4540:-591.478,-325.572,-282.525,-266.069,0,-223.323	1/2:237:0,128,108:0:0:128,108:4482,3419:-444.882,-245.89,-207.359,-199.11,0,-166.599	1/2:52:0,26,26:0:0:26,26:894,832:-98.6998,-60.3022,-52.4755,-38.6414,0,-30.8146	1/2:100:1,49,50:1:36:49,50:1719,1580:-204.201,-111.971,-99.1391,-90.6299,0,-77.4977	1/2:121:0,66,54:0:0:66,54:2308,1720:-229.898,-122.13,-102.262,-107.836,0,-91.5807	1/2:101:0,68,33:0:0:68,33:2366,1056:-191.709,-76.4594,-55.9894,-115.517,0,-105.583	1/2:7:0,1,6:0:0:1,6:36,192:-15.88,-14.1389,-13.8379,-1.97784,0,-0.171655	1/2:3:0,1,2:0:0:1,2:36,64:-6.274,-4.90624,-4.60521,-1.5905,0,-0.988437	1/2:4:0,2,2:0:0:2,2:72,60:-7.46964,-4.5264,-3.92434,-3.17767,0,-2.57561	1/2:9:0,2,7:0:0:2,7:72,211:-17.5917,-15.259,-14.6569,-2.52085,0,-0.413636	2/2:7:0,1,6:0:0:1,6:36,180:-14.6365,-13.1572,-12.8562,-1.80618,-0.117878,0	1/2:275:0,231,44:0:0:231,44:8090,1381:-512.978,-99.415,-29.8771,-413.838,0,-400.593	1/2:77:0,21,56:0:0:21,56:753,1746:-158.048,-122.375,-116.054,-35.9099,0,-19.0522	1/2:84:0,65,19:0:0:65,19:2297,563:-112.194,-40.1863,-20.6194,-72.2501,0,-66.5305	2/2:2:0,0,2:0:0:0,2:0,64:-5.5083,-5.5083,-5.5083,-0.60206,-0.60206,0	1/2:131:0,40,91:0:0:40,91:1420,2894:-271.101,-208.712,-196.671,-62.6206,0,-35.2268	1/2:32:0,15,17:0:0:15,17:527,540:-62.5177,-39.1665,-34.6511,-23.5958,0,-18.4782	1/2:90:0,39,51:0:0:39,51:1392,1618:-180.76,-116.744,-105.004,-64.2623,0,-48.9097	1/2:89:0,57,32:0:0:57,32:2011,1024:-170.844,-74.1512,-56.9925,-96.9579,0,-87.325	1/2:111:0,88,23:0:0:88,23:3115,731:-207.05,-52.9258,-26.4351,-154.399,0,-147.476	1/2:110:0,68,42:0:0:68,42:2365,1332:-215.83,-96.151,-75.681,-119.944,0,-107.301	1/2:94:0,63,31:0:0:63,31:2195,924:-147.845,-65.7039,-46.739,-82.3798,0,-73.0479	1/2:121:0,32,86:0:0:32,86:1123,2718:-250.939,-193.821,-184.188,-57.1652,0,-31.2766	1/2:88:0,33,54:0:0:33,54:1134,1716:-179.731,-122.992,-113.058,-56.7962,0,-40.5406	1/2:78:0,37,41:0:0:37,41:1298,1306:-157.495,-92.4881,-81.35,-65.261,0,-52.9188	1/2:88:0,31,55:0:0:31,55:1088,1761:-182.851,-126.018,-116.686,-56.87,0,-40.3134	1/2:3:0,1,2:0:0:1,2:29,64:-6.40938,-4.90624,-4.60521,-1.73555,0,-1.13349	1/2:104:0,35,69:0:0:35,69:1233,2062:-186.636,-146.51,-135.974,-40.3237,0,-19.5526	1/2:14:0,6,8:0:0:6,8:204,256:-29.4185,-18.7552,-16.9491,-10.9197,0,-8.51148	2/2:4:0,0,4:0:0:0,4:0,121:-10.0795,-10.0795,-10.0795,-1.20412,-1.20412,0	1/2:95:0,60,35:0:0:60,35:2110,1113:-1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chr10	419545	.	T	A	107550	PASS	AB=0.556801;ABP=78.0024;AC=133;AF=0.722826;AN=184;AO=4063;CIGAR=1X;DP=5261;DPB=5261;DPRA=0;EPP=259.68;EPPR=272.355;GTI=3;LEN=1;MEANALT=1.03261;MQM=59.5855;MQMR=59.6;NS=92;NUMALT=1;ODDS=3.81864;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143552;QR=42793;RO=1195;RPL=2;RPP=8808.34;RPPR=2597.92;RPR=4061;RUN=1;SAF=1687;SAP=256.725;SAR=2376;SRF=790;SRP=272.355;SRR=405;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:11,7:11:392:7:252:-17.6021,0,-30.1933	1/1:45:0,45:0:0:45:1580:-142.477,-13.5464,0	0/1:58:28,30:28:1004:30:1035:-75.9769,0,-73.208	0/1:77:39,38:39:1400:38:1340:-97.6938,0,-103.102	0/1:13:4,9:4:144:9:316:-24.8655,0,-9.40023	0/1:20:8,12:8:288:12:428:-32.8382,0,-20.2444	0/1:71:30,41:30:1080:41:1456:-109.963,0,-76.1378	0/1:40:15,25:15:540:25:885:-67.9253,0,-36.8944	0/1:42:17,25:17:612:25:888:-67.5876,0,-42.7702	0/1:27:12,15:12:428:15:532:-40.0853,0,-30.7061	0/1:110:61,49:61:2179:49:1743:-124.013,0,-163.26	0/1:115:46,69:46:1652:69:2452:-186.305,0,-114.336	1/1:114:0,114:0:0:114:4019:-361.886,-34.3174,0	1/1:133:0,133:0:0:133:4725:-425.272,-40.037,0	1/1:92:0,92:0:0:92:3256:-293.237,-27.6948,0	1/1:97:0,97:0:0:97:3427:-308.502,-29.1999,0	0/1:80:15,65:15:536:65:2287:-181.961,0,-24.4473	0/1:57:6,51:6:216:51:1810:-146.007,0,-2.60074	0/1:51:21,30:21:752:30:1063:-80.6201,0,-52.6537	0/1:58:28,30:28:1000:30:1045:-76.7824,0,-72.845	0/1:46:21,25:21:748:25:879:-65.572,0,-53.7625	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.529	0/1:32:16,16:16:572:16:572:-42.1805,0,-42.1805	0/1:19:2,17:2:72:17:612:-49.6607,0,-1.11715	0/1:32:11,21:11:388:21:744:-57.6467,0,-25.6244	1/1:93:0,93:0:0:93:3309:-298.017,-27.9958,0	1/1:99:0,99:0:0:99:3493:-314.56,-29.802,0	0/1:29:8,21:8:288:21:732:-57.4669,0,-17.5375	0/1:80:46,34:46:1644:34:1189:-83.2124,0,-124.166	1/1:34:0,33:0:0:33:1165:-104.521,-9.93399,0	1/1:54:0,54:0:0:54:1926:-173.513,-16.2556,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2463	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:15:0,15:0:0:15:520:-47.126,-4.51545,0	1/1:250:1,249:1:36:249:8742:-783.158,-71.6592,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:119:0,119:0:0:119:4231:-380.864,-35.8226,0	.:.:.:.:.:.:.:.	0/1:45:10,35:10:360:35:1218:-96.3711,0,-19.1849	0/1:53:23,30:23:828:30:1060:-79.7342,0,-58.888	0/1:33:8,25:8:288:25:885:-70.0279,0,-16.3325	0/1:106:53,53:53:1876:53:1886:-138.095,0,-137.205	1/1:108:0,108:0:0:108:3830:-344.889,-32.5112,0	1/1:35:0,35:0:0:35:1240:-111.885,-10.5361,0	1/1:32:0,32:0:0:32:1098:-99.0974,-9.63296,0	0/1:39:14,25:14:504:25:884:-68.1382,0,-33.9579	1/1:25:0,25:0:0:25:877:-79.2424,-7.52575,0	0/1:52:28,24:28:1004:24:856:-61.6443,0,-75.02	1/1:43:0,43:0:0:43:1536:-138.532,-12.9443,0	.:.:.:.:.:.:.:.	0/1:29:9,20:9:324:20:710:-55.4438,0,-20.7677	0/1:15:8,7:8:288:7:244:-17.784,0,-21.752	0/1:3:2,1:2:72:1:36:-2.68614,0,-5.93363	1/1:34:0,33:0:0:33:1157:-104.07,-9.93399,0	0/1:25:18,6:18:644:6:212:-11.8124,0,-50.7052	0/1:6:2,4:2:72:4:144:-11.5065,0,-5.03054	0/1:5:3,2:3:108:2:68:-4.95218,0,-8.56908	1/1:43:0,43:0:0:43:1508:-135.982,-12.9443,0	0/1:144:74,70:74:2652:70:2496:-181.535,0,-195.53	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:29:19,10:19:684:10:330:-21.2871,0,-53.1605	1/1:57:3,54:3:108:54:1912:-162.28,-7.08596,0	1/1:20:0,20:0:0:20:716:-64.7631,-6.0206,0	1/1:24:0,24:0:0:24:860:-77.691,-7.22472,0	0/1:48:29,19:29:1040:19:676:-46.713,0,-79.4603	1/1:66:0,66:0:0:66:2329:-209.842,-19.868,0	0/1:53:19,34:19:671:34:1174:-90.0028,0,-44.7612	1/1:29:0,29:0:0:29:1022:-92.2852,-8.72987,0	1/1:95:1,94:1:36:94:3331:-296.34,-24.9996,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:23:10,13:10:356:13:464:-35.1738,0,-25.4389	1/1:22:0,22:0:0:22:771:-69.7066,-6.62266,0	1/1:100:0,100:0:0:100:3569:-321.386,-30.103,0	0/1:42:19,23:19:684:23:828:-62.1985,0,-49.1908	1/1:37:1,36:1:36:36:1238:-108.099,-7.53984,0	1/1:37:0,37:0:0:37:1300:-117.281,-11.1381,0	0/1:7:1,6:1:36:6:208:-16.95,0,-1.49106	0/1:33:8,25:8:288:25:896:-71.0264,0,-16.3227	1/1:41:0,41:0:0:41:1444:-130.23,-12.3422,0	0/1:76:36,40:36:1281:40:1386:-102.14,0,-92.7068	1/1:111:0,111:0:0:111:3936:-354.405,-33.4143,0	0/1:119:65,54:65:2327:54:1924:-137.566,0,-173.802	1/1:130:0,130:0:0:130:4598:-413.951,-39.1339,0	0/1:208:92,116:92:3291:116:4133:-309.505,0,-233.775	1/1:49:0,49:0:0:49:1748:-157.602,-14.7505,0	0/1:74:36,38:36:1288:38:1331:-97.785,0,-93.9301	1/1:80:0,80:0:0:80:2856:-257.241,-24.0824,0	0/1:61:15,46:15:540:46:1621:-127.81,0,-30.5336	0/1:128:39,89:39:1400:89:3168:-246.757,0,-87.7461	0/1:110:76,34:76:2728:34:1204:-75.5318,0,-212.617	1/1:26:0,26:0:0:26:875:-79.0543,-7.82678,0	1/1:172:4,168:4:144:168:5846:-512.883,-38.4635,0
chr10	419551	.	T	G	24492.4	PASS	AB=0.424801;ABP=138.869;AC=51;AF=0.277174;AN=184;AO=1185;CIGAR=1X;DP=5572;DPB=5572;DPRA=1.04279;EPP=244.473;EPPR=94.9581;GTI=4;LEN=1;MEANALT=1;MQM=59.6076;MQMR=59.5781;NS=92;NUMALT=1;ODDS=0.0689906;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42008;QR=156565;RO=4387;RPL=5;RPP=2532.96;RPPR=9477.22;RPR=1180;RUN=1;SAF=779;SAP=257.959;SAR=406;SRF=1982;SRP=91.5764;SRR=2405;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:7,11:7:252:11:396:-30.556,0,-17.6021	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.713	0/1:59:30,29:30:1076:29:1029:-75.144,0,-79.3688	0/1:80:38,42:38:1353:42:1495:-110.743,0,-97.9589	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:21:14,7:14:504:7:252:-16.705,0,-39.3765	0/1:74:43,31:43:1524:31:1079:-75.1364,0,-115.177	0/1:44:29,15:29:1032:15:527:-34.5149,0,-79.7578	0/1:44:27,17:27:972:17:612:-42.1681,0,-74.5444	0/1:30:18,12:18:644:12:419:-28.9869,0,-49.2597	0/1:111:50,61:50:1796:61:2147:-160.078,0,-128.485	0/1:115:72,43:72:2576:43:1536:-103.915,0,-197.453	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.819	0/0:139:139,0:139:4948:0:0:0,-41.8432,-445.198	0/0:101:101,0:101:3604:0:0:0,-30.404,-324.533	0/0:101:101,0:101:3584:0:0:0,-30.404,-322.695	0/1:81:67,14:67:2379:14:504:-21.2695,0,-189.939	0/1:56:50,6:50:1780:6:212:-2.54958,0,-143.609	0/1:59:39,20:39:1400:20:711:-46.5549,0,-108.514	0/1:59:32,27:32:1143:27:968:-69.6766,0,-85.3362	0/1:46:25,21:25:892:21:752:-54.0256,0,-66.737	0/1:16:7,9:7:252:9:316:-23.9587,0,-18.2125	0/1:31:16,15:16:567:15:536:-39.2429,0,-42.0288	0/1:20:18,2:18:644:2:72:-0.816123,0,-52.2369	0/1:33:22,11:22:784:11:392:-25.6861,0,-60.9453	0/0:98:98,0:98:3495:0:0:0,-29.5009,-314.75	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.749	0/1:31:23,8:23:819:8:288:-16.9355,0,-64.6991	0/1:85:39,46:39:1382:46:1648:-123.021,0,-99.053	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.319	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.72	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:2,8:2:72:8:284:-22.8823,0,-3.82642	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1668	0/0:265:264,1:264:9416:1:36:0,-76.1747,-843.759	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.75	.:.:.:.:.:.:.:.	0/1:45:35,10:35:1248:10:356:-18.8218,0,-99.0767	0/1:53:32,21:32:1135:21:743:-51.2372,0,-86.481	0/1:34:27,7:27:968:7:243:-11.9715,0,-77.1977	0/1:111:58,53:58:2063:53:1836:-132.101,0,-152.51	0/0:114:114,0:114:4088:0:0:0,-34.3174,-368.097	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.441	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.153	0/1:40:25,15:25:900:15:540:-36.8953,0,-69.2798	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.253	0/1:53:26,27:26:928:27:955:-70.3093,0,-67.8533	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.892	.:.:.:.:.:.:.:.	0/1:33:23,10:23:828:10:360:-22.8021,0,-64.8477	0/1:15:7,8:7:252:8:273:-20.3847,0,-18.5135	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.18921	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.813	0/1:26:7,19:7:243:19:650:-50.9895,0,-14.3807	0/1:6:4,2:4:144:2:63:-4.17697,0,-11.5065	0/1:5:2,3:2:72:3:99:-7.73131,0,-5.33062	0/0:45:45,0:45:1592:0:0:0,-13.5463,-143.464	0/1:144:72,72:72:2553:72:2572:-188.353,0,-186.654	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:33:12,21:12:423:21:756:-58.4332,0,-28.4604	0/0:61:58,3:58:2084:3:108:0,-8.29008,-177.738	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0016	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6451	0/1:51:22,29:22:792:29:1013:-76.1215,0,-56.2394	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.38	0/1:52:34,18:34:1211:18:644:-42.637,0,-93.6327	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.5927	0/0:102:101,1:101:3604:1:36:0,-27.1068,-320.903	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:24:14,10:14:500:10:356:-25.1112,0,-38.1115	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7848	0/0:110:110,0:110:3939:0:0:0,-33.1133,-354.683	0/1:43:25,18:25:896:18:639:-44.894,0,-68	0/0:44:43,1:43:1548:1:36:0,-9.64704,-135.984	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.092	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:34:26,8:26:919:8:288:-16.0216,0,-72.7911	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.826	0/1:82:46,36:46:1652:36:1288:-91.5329,0,-124.268	0/0:117:117,0:117:4167:0:0:0,-35.2205,-375.171	0/1:120:56,64:56:1983:64:2252:-166.754,0,-142.546	0/0:135:135,0:135:4796:0:0:0,-40.639,-431.716	0/1:216:124,92:124:4410:92:3279:-230.289,0,-332.007	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.677	0/1:75:39,36:39:1388:36:1283:-93.1781,0,-102.609	0/0:81:81,0:81:2886:0:0:0,-24.3834,-259.942	0/1:66:51,15:51:1828:15:521:-27.3082,0,-144.928	0/1:132:94,38:94:3328:38:1360:-82.9434,0,-259.958	0/1:112:37,75:37:1332:75:2644:-204.45,0,-86.4463	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7683	0/0:209:205,4:205:7283:4:140:0,-49.9707,-642.502
chr10	429953	.	A	T	34049.7	PASS	AB=0.521668;ABP=17.8783;AC=53;AF=0.284946;AN=186;AO=1928;CIGAR=1X;DP=7079;DPB=7079;DPRA=0.962185;EPP=3958.37;EPPR=10539.3;GTI=1;LEN=1;MEANALT=1.03571;MQM=59.9896;MQMR=59.9953;NS=93;NUMALT=1;ODDS=0.0414359;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68923;QR=180385;RO=5140;RPL=27;RPP=3958.37;RPPR=10539.3;RPR=1901;RUN=1;SAF=1928;SAP=4189.61;SAR=0;SRF=5140;SRP=11164.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:7,12:7:252:12:417:-32.1406,0,-17.3094	0/0:109:109,0:109:3735:0:0:0,-32.8123,-336.345	0/1:75:29,46:29:987:46:1644:-125.67,0,-66.5552	0/1:90:37,53:37:1298:53:1888:-143.106,0,-90.0244	0/1:42:20,22:20:697:22:781:-57.9688,0,-50.4074	0/1:41:22,19:22:788:19:684:-49.5481,0,-58.9026	0/1:55:23,32:23:813:32:1144:-86.7129,0,-56.9325	0/1:163:79,84:79:2761:84:2991:-220.353,0,-199.658	0/1:180:86,94:86:2983:94:3356:-248.071,0,-214.51	0/1:80:35,45:35:1252:45:1616:-121.648,0,-88.9027	0/1:77:34,43:34:1205:43:1539:-115.623,0,-85.5746	0/1:65:29,36:29:1029:36:1292:-97.0168,0,-73.3542	0/0:80:78,0:78:2759:0:0:0,-23.4803,-248.208	0/0:89:89,0:89:3158:0:0:0,-26.7917,-284.443	0/0:94:92,0:92:3255:0:0:0,-27.6948,-292.808	0/0:75:74,0:74:2570:0:0:0,-22.2762,-231.183	0/1:75:38,37:38:1311:37:1328:-97.245,0,-95.7059	0/1:71:30,41:30:1050:41:1476:-111.763,0,-73.4331	0/1:37:23,14:23:809:14:504:-34.56,0,-61.9902	0/1:49:17,32:17:593:32:1143:-88.4282,0,-38.9442	0/1:115:61,54:61:2158:54:1932:-139.538,0,-159.865	0/1:37:14,23:14:485:23:828:-63.706,0,-32.8389	0/1:94:49,45:49:1677:45:1616:-117.433,0,-122.91	0/1:117:50,67:50:1751:67:2408:-181.756,0,-122.647	0/1:18:8,10:8:284:10:356:-26.9627,0,-20.4848	0/0:271:269,1:269:9284:1:36:0,-78.0396,-831.937	0/0:118:118,0:118:4146:0:0:0,-35.5215,-373.32	0/1:36:17,19:17:608:19:684:-51.0532,0,-44.2149	0/1:141:73,68:73:2574:68:2425:-176.059,0,-189.462	0/0:134:133,1:133:4609:1:36:0,-36.7397,-411.375	0/0:118:118,0:118:4127:0:0:0,-35.5215,-371.611	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:150:0:0:0,-1.50515,-13.7951	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:230:230,0:230:8135:0:0:0,-69.2369,-732.162	0/1:85:43,42:43:1488:42:1495:-109.248,0,-108.618	0/0:90:90,0:90:3168:0:0:0,-27.0927,-285.341	.:.:.:.:.:.:.:.	0/1:89:35,53:35:1218:53:1908:-145.294,0,-83.2149	0/1:42:20,22:20:720:22:774:-57.337,0,-52.4855	0/1:94:51,43:51:1764:43:1511:-107.983,0,-130.739	0/1:92:35,57:35:1226:57:2048:-156.897,0,-82.945	0/0:94:94,0:94:3330:0:0:0,-28.2968,-299.917	0/0:68:68,0:68:2391:0:0:0,-20.47,-215.443	0/0:74:74,0:74:2619:0:0:0,-22.2762,-235.953	0/1:92:45,47:45:1578:47:1692:-124.872,0,-114.612	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.128	0/1:82:36,46:36:1277:46:1644:-123.564,0,-90.5466	0/0:77:77,0:77:2707:0:0:0,-23.1793,-243.871	0/1:9:7,2:7:252:2:68:-3.74844,0,-20.3197	0/1:68:43,25:43:1533:25:900:-60.851,0,-117.791	0/1:26:9,17:9:324:17:612:-47.5867,0,-21.6791	1/1:22:2,20:2:57:20:720:-59.7155,-1.20935,0	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:30:12,18:12:402:18:648:-49.621,0,-27.4683	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:52:52,0:52:1823:0:0:0,-15.6536,-164.345	0/1:133:76,57:76:2716:57:2044:-144.195,0,-204.61	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:86:42,44:42:1485:44:1576:-116.243,0,-108.054	0/0:122:122,0:122:4282:0:0:0,-36.7257,-385.555	0/0:64:63,1:63:2222:1:32:0,-16.0666,-197.042	0/0:49:49,0:49:1696:0:0:0,-14.7505,-152.918	0/1:73:37,36:37:1317:36:1276:-93.1679,0,-96.8546	0/0:59:58,0:58:2020:0:0:0,-17.4597,-181.706	0/1:44:16,28:16:561:28:997:-76.7985,0,-37.5718	0/0:43:42,0:42:1474:0:0:0,-12.6433,-132.591	0/0:79:78,0:78:2780:0:0:0,-23.4803,-250.082	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:56:23,33:23:816:33:1184:-90.0106,0,-56.904	0/0:70:70,0:70:2422:0:0:0,-21.0721,-218.228	0/0:209:209,0:209:7387:0:0:0,-62.9153,-664.877	0/1:95:48,47:48:1705:47:1672:-122.167,0,-125.136	0/0:46:46,0:46:1573:0:0:0,-13.8474,-141.85	0/0:60:57,3:57:2018:3:108:0,-7.98663,-171.814	0/1:12:6,6:6:201:6:216:-16.1782,0,-14.8047	0/1:49:21,28:21:756:28:996:-75.2044,0,-53.6168	0/0:94:94,0:94:3248:0:0:0,-28.2968,-292.535	0/1:109:53,56:53:1859:56:2016:-148.901,0,-134.771	0/0:160:159,0:159:5591:0:0:0,-47.8638,-502.952	0/1:72:49,23:49:1730:23:789:-49.6491,0,-134.307	0/0:78:78,0:78:2747:0:0:0,-23.4803,-247.469	0/1:160:84,76:84:2952:76:2701:-195.168,0,-217.745	0/0:51:51,0:51:1776:0:0:0,-15.3525,-160.115	0/1:78:41,37:41:1472:37:1313:-94.9894,0,-109.296	0/0:83:83,0:83:2942:0:0:0,-24.9855,-265.012	0/1:53:28,25:28:985:25:900:-65.3664,0,-73.0069	0/1:117:56,61:56:2000:61:2187:-161.874,0,-145.053	0/1:98:30,68:30:986:68:2448:-191.073,0,-59.531	0/0:102:102,0:102:3550:0:0:0,-30.7051,-319.703	0/0:121:121,0:121:4295:0:0:0,-36.4246,-386.725
chr10	434535	.	TCC	GCT,GCC	141232	PASS	AB=0.563944,0.432394;ABP=129.088,143.942;AC=137,51;AF=0.728723,0.271277;AN=188;AO=5000,1538;CIGAR=1X1M1X,1X2M;DP=6558;DPB=6558;DPRA=0,0.973374;EPP=10277.8,3120.72;EPPR=0;GTI=3;LEN=3,1;MEANALT=1.75532,2.22642;MQM=59.91,59.8036;MQMR=0;NS=94;NUMALT=2;ODDS=1.7394;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=175642,54727;QR=0;RO=0;RPL=4931,1512;RPP=10269.3,3120.72;RPPR=0;RPR=69,26;RUN=1,1;SAF=1,0;SAP=10851.7,3342.73;SAR=4999,1538;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,27,5:0:0:27,5:949,176:-91.9242,-14.6799,-6.55206,-77.5961,0,-76.091	1/1:78:0,78,0:0:0:78,0:2768,0:-249.362,-23.4803,0,-249.362,-23.4803,-249.362	1/2:88:0,55,32:0:0:55,32:1934,1129:-249.412,-91.9845,-75.4278,-157.497,0,-147.864	1/2:156:0,86,70:0:0:86,70:2994,2512:-448.693,-205.26,-179.371,-243.788,0,-222.715	1/2:18:0,11,7:0:0:11,7:384,248:-51.7879,-20.557,-17.2457,-31.583,0,-29.4758	1/2:46:0,29,17:0:0:29,17:1015,608:-132.485,-49.9097,-41.1798,-82.9303,0,-77.8128	1/2:70:0,45,25:0:0:45,25:1568,896:-200.941,-73.4346,-59.8883,-127.861,0,-120.335	1/2:110:0,52,57:0:0:52,57:1849,2040:-317.031,-166.354,-150.7,-150.674,0,-133.516	1/2:73:0,62,11:0:0:62,11:2187,392:-210.384,-32.3087,-13.6449,-178.431,0,-175.12	1/2:51:0,34,17:0:0:34,17:1181,608:-145.937,-49.9345,-39.6995,-96.3569,0,-91.2394	1/2:42:0,28,14:0:0:28,14:1002,500:-122.831,-41.1218,-32.6929,-82.0669,0,-77.8525	1/2:92:0,48,44:0:0:48,44:1689,1567:-265.567,-128.076,-113.626,-137.846,0,-124.6	1/1:80:0,80,0:0:0:80,0:2834,0:-255.299,-24.0824,0,-255.299,-24.0824,-255.299	1/1:65:0,64,1:0:0:64,1:2247,36:-202.133,-19.2659,0,-199.195,-15.9687,-198.894	1/1:60:0,60,0:0:0:60,0:2127,0:-191.689,-18.0618,0,-191.689,-18.0618,-191.689	1/1:60:0,60,0:0:0:60,0:2122,0:-191.248,-18.0618,0,-191.248,-18.0618,-191.248	1/2:43:0,22,21:0:0:22,21:755,756:-123.336,-62.0456,-55.4229,-61.6421,0,-55.3204	1/2:35:0,16,19:0:0:16,19:560,680:-101.366,-55.8096,-50.9931,-45.91,0,-40.1905	1/2:55:0,39,16:0:0:39,16:1376,568:-158.679,-46.6354,-34.8952,-112.398,0,-107.582	1/2:89:0,43,46:0:0:43,46:1525,1625:-256.634,-132.39,-119.445,-124.598,0,-110.751	1/2:97:0,75,22:0:0:75,22:2643,784:-279.445,-64.2613,-41.684,-215.539,0,-208.916	1/2:55:0,29,25:0:0:29,25:1027,873:-154.66,-70.999,-62.2691,-83.6531,0,-76.1273	1/2:122:0,53,67:0:0:53,67:1866,2387:-346.567,-194.668,-178.714,-152.002,0,-131.833	1/2:69:0,44,25:0:0:44,25:1509,896:-195.933,-73.4346,-60.1893,-122.851,0,-115.326	1/2:60:0,36,24:0:0:36,24:1252,860:-172.286,-70.4971,-59.66,-102.142,0,-94.9177	1/1:196:0,196,0:0:0:196,0:6934,0:-624.117,-59.0019,0,-624.117,-59.0019,-624.117	1/1:216:0,216,0:0:0:216,0:7588,0:-682.948,-65.0225,0,-682.948,-65.0225,-682.948	1/2:38:0,18,20:0:0:18,20:629,704:-108.823,-57.6596,-52.2411,-51.5143,0,-45.4937	1/2:144:0,73,70:0:0:73,70:2562,2474:-409.981,-201.479,-179.504,-208.495,0,-187.423	1/1:129:0,129,0:0:0:129,0:4530,0:-407.87,-38.8329,0,-407.87,-38.8329,-407.87	1/1:81:0,81,0:0:0:81,0:2864,0:-257.998,-24.3834,0,-257.998,-24.3834,-257.998	1/1:8:0,8,0:0:0:8,0:257,0:-23.4428,-2.40824,0,-23.4428,-2.40824,-23.4428	1/2:11:0,6,5:0:0:6,5:205,176:-31.3107,-14.6799,-12.8737,-16.978,0,-15.4728	1/1:4:0,4,0:0:0:4,0:134,0:-12.3905,-1.20412,0,-12.3905,-1.20412,-12.3905	1/1:13:0,13,0:0:0:13,0:466,0:-42.2787,-3.91339,0,-42.2787,-3.91339,-42.2787	1/1:10:0,10,0:0:0:10,0:353,0:-32.1092,-3.0103,0,-32.1092,-3.0103,-32.1092	1/1:180:0,179,0:0:0:179,0:6362,0:-572.313,-53.8844,0,-572.313,-53.8844,-572.313	1/2:101:0,52,48:0:0:52,48:1769,1681:-280.32,-136.83,-121.177,-143.563,0,-129.113	1/1:47:0,47,0:0:0:47,0:1683,0:-151.757,-14.1484,0,-151.757,-14.1484,-151.757	1/1:1:0,1,0:0:0:1,0:25,0:-2.49986,-0.30103,0,-2.49986,-0.30103,-2.49986	1/2:144:0,63,81:0:0:63,81:2197,2891:-414.698,-236.024,-217.059,-179.027,0,-154.643	1/2:36:0,23,13:0:0:23,13:823,468:-105.657,-38.5463,-31.6226,-67.4696,0,-63.5562	1/2:97:0,85,12:0:0:85,12:2955,432:-275.845,-35.6088,-10.0213,-240.595,0,-236.983	1/2:55:0,32,23:0:0:32,23:1128,806:-157.779,-65.9345,-56.3016,-92.1955,0,-85.2718	1/1:64:0,64,0:0:0:64,0:2239,0:-201.771,-19.2659,0,-201.771,-19.2659,-201.771	1/1:46:0,46,0:0:0:46,0:1600,0:-144.284,-13.8474,0,-144.284,-13.8474,-144.284	1/1:78:0,78,0:0:0:78,0:2715,0:-244.593,-23.4803,0,-244.593,-23.4803,-244.593	1/2:169:0,103,64:0:0:103,64:3593,2300:-479.792,-187.627,-156.621,-292.161,0,-272.895	1/1:79:0,79,0:0:0:79,0:2795,0:-251.786,-23.7814,0,-251.786,-23.7814,-251.786	1/2:78:0,46,32:0:0:46,32:1624,1127:-224.352,-92.1045,-78.2571,-132.6,0,-122.967	1/1:70:0,70,0:0:0:70,0:2449,0:-220.664,-21.0721,0,-220.664,-21.0721,-220.664	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/2:62:0,19,43:0:0:19,43:664,1535:-179.51,-125.498,-119.778,-54.3635,0,-41.4192	1/2:60:0,26,34:0:0:26,34:908,1204:-172.248,-98.3932,-90.5664,-74.2059,0,-63.9709	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/1:84:0,82,0:0:0:82,0:2859,0:-257.187,-24.6845,0,-257.187,-24.6845,-257.187	1/2:50:0,38,12:0:0:38,12:1337,432:-144.44,-35.6088,-24.1697,-109.189,0,-105.577	1/2:7:0,2,5:0:0:2,5:70,180:-20.7395,-15.0469,-14.4449,-6.04527,0,-4.54012	1/2:3:0,2,1:0:0:2,1:64,32:-8.0544,-2.89828,-2.29622,-5.47604,0,-5.17501	1/1:75:0,75,0:0:0:75,0:2661,0:-239.727,-22.5773,0,-239.727,-22.5773,-239.727	1/2:68:0,38,30:0:0:38,30:1353,1080:-198.756,-88.4823,-77.0432,-110.632,0,-101.601	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/2:85:0,36,49:0:0:36,49:1255,1748:-244.905,-142.846,-132.009,-102.411,0,-87.661	1/1:151:0,150,0:0:0:150,0:5248,0:-472.162,-45.1545,0,-472.162,-45.1545,-472.162	1/1:39:0,37,2:0:0:37,2:1298,68:-116.78,-11.1381,0,-111.265,-5.28246,-110.663	1/1:64:0,64,0:0:0:64,0:2198,0:-197.971,-19.2659,0,-197.971,-19.2659,-197.971	1/2:104:0,69,35:0:0:69,35:2425,1248:-299.47,-102.089,-81.3177,-197.735,0,-187.199	1/1:120:0,120,0:0:0:120,0:4184,0:-376.746,-36.1236,0,-376.746,-36.1236,-376.746	1/2:32:0,12,20:0:0:12,20:424,708:-92.5558,-58.025,-54.4126,-34.8843,0,-28.8637	1/1:34:0,34,0:0:0:34,0:1184,0:-106.861,-10.235,0,-106.861,-10.235,-106.861	1/1:43:0,43,0:0:0:43,0:1513,0:-136.46,-12.9443,0,-136.46,-12.9443,-136.46	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:58:0,34,24:0:0:34,24:1197,860:-167.94,-70.4971,-60.2621,-97.7986,0,-90.5739	1/1:68:0,68,0:0:0:68,0:2409,0:-217.067,-20.47,0,-217.067,-20.47,-217.067	1/1:108:0,106,0:0:0:106,0:3720,0:-334.637,-31.9092,0,-334.637,-31.9092,-334.637	1/2:94:0,38,56:0:0:38,56:1331,2000:-271.712,-163.415,-151.976,-108.649,0,-91.7915	1/1:40:0,39,0:0:0:39,0:1354,0:-121.895,-11.7402,0,-121.895,-11.7402,-121.895	1/1:66:0,66,0:0:0:66,0:2323,0:-209.284,-19.868,0,-209.284,-19.868,-209.284	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:62:0,30,32:0:0:30,32:1036,1144:-177.572,-93.4089,-84.378,-84.5143,0,-74.8814	1/1:119:0,119,0:0:0:119,0:4173,0:-375.748,-35.8226,0,-375.748,-35.8226,-375.748	1/2:117:0,64,52:0:0:64,52:2250,1868:-335.526,-152.386,-133.12,-183.136,0,-167.482	1/1:68:0,68,0:0:0:68,0:2394,0:-215.714,-20.47,0,-215.714,-20.47,-215.714	1/2:52:0,28,24:0:0:28,24:993,852:-150.676,-69.7757,-61.3468,-81.2554,0,-74.0307	1/1:77:0,77,0:0:0:77,0:2712,0:-244.315,-23.1793,0,-244.315,-23.1793,-244.315	1/2:150:0,82,67:0:0:82,67:2856,2378:-426.08,-193.836,-169.152,-232.324,0,-212.155	1/1:24:0,24,0:0:0:24,0:831,0:-75.1021,-7.22472,0,-75.1021,-7.22472,-75.1021	1/2:83:0,50,32:0:0:50,32:1795,1115:-237.207,-90.7764,-75.7249,-146.549,0,-136.916	1/1:62:0,62,0:0:0:62,0:2185,0:-196.911,-18.6639,0,-196.911,-18.6639,-196.911	1/2:33:0,25,7:0:0:25,7:869,243:-90.3806,-19.7224,-12.1966,-70.7155,0,-68.6083	1/2:76:0,43,33:0:0:43,33:1507,1176:-218.609,-95.9861,-83.0418,-122.976,0,-113.042	1/2:67:0,26,41:0:0:26,41:907,1440:-191.301,-117.551,-109.724,-74.0999,0,-61.7576	1/1:78:0,78,0:0:0:78,0:2757,0:-248.372,-23.4803,0,-248.372,-23.4803,-248.372	1/1:106:0,106,0:0:0:106,0:3766,0:-339.14,-31.9092,0,-339.14,-31.9092,-339.14
chr10	434560	.	G	A	25194.1	PASS	AB=0.446342;ABP=90.8638;AC=51;AF=0.274194;AN=186;AO=1570;CIGAR=1X;DP=6438;DPB=6438;DPRA=1.03889;EPP=3412.22;EPPR=10558.5;GTI=1;LEN=1;MEANALT=1.03774;MQM=59.7299;MQMR=59.9268;NS=93;NUMALT=1;ODDS=2.38473;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56298;QR=173693;RO=4865;RPL=1570;RPP=3412.22;RPPR=10567.2;RPR=0;RUN=1;SAF=0;SAP=3412.22;SAR=1570;SRF=1;SRP=10558.5;SRR=4864;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:27,6:27:964:6:216:-9.85652,0,-77.1428	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/1:87:53,34:53:1892:34:1224:-84.2598,0,-144.369	0/1:153:81,71:81:2896:71:2543:-183.004,0,-214.629	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	0/1:46:28,18:28:996:18:648:-44.7692,0,-76.1071	0/1:72:44,28:44:1576:28:1004:-69.0017,0,-120.457	0/1:110:50,60:50:1792:60:2156:-161.194,0,-128.449	0/1:68:57,11:57:2040:11:396:-15.5127,0,-163.402	0/1:49:32,17:32:1144:17:612:-40.663,0,-88.519	0/1:43:28,15:28:1000:15:540:-35.9922,0,-77.3711	0/1:91:46,45:46:1630:45:1608:-117.616,0,-119.594	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.863	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:43:22,21:22:772:21:756:-55.4229,0,-56.857	0/1:34:16,18:16:563:18:648:-48.4169,0,-40.7636	0/1:54:38,16:38:1352:16:576:-35.9194,0,-105.725	0/1:88:43,45:43:1532:45:1616:-118.232,0,-111.682	0/1:93:73,20:73:2608:20:716:-36.7719,0,-206.973	0/1:53:26,27:26:932:27:972:-71.8429,0,-68.2443	0/1:126:55,71:55:1968:71:2537:-189.611,0,-139.448	0/1:68:44,24:44:1568:24:864:-57.6125,0,-120.942	0/1:62:37,25:37:1316:25:890:-61.7546,0,-100.078	0/0:192:192,0:192:6872:0:0:0,-57.7978,-618.523	0/0:208:208,0:208:7397:0:0:0,-62.6142,-665.748	0/1:38:17,20:17:593:20:720:-53.7629,0,-42.3389	0/1:142:70,72:70:2493:72:2588:-190.414,0,-181.875	0/0:127:127,0:127:4536:0:0:0,-38.2308,-408.397	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:178:177,1:177:6336:1:36:0,-49.9851,-566.724	0/1:101:53,48:53:1880:48:1724:-125.009,0,-139.075	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	.:.:.:.:.:.:.:.	0/1:145:64,81:64:2285:81:2903:-217.844,0,-162.259	0/1:34:21,13:21:752:13:468:-32.2246,0,-57.7712	0/1:95:80,15:80:2860:15:536:-19.941,0,-229.04	0/1:54:31,23:31:1108:23:828:-58.5885,0,-83.7754	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/1:165:99,66:99:3536:66:2353:-162.159,0,-268.551	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.637	0/1:76:44,32:44:1576:32:1135:-79.5786,0,-119.253	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:62:19,43:19:672:43:1544:-120.589,0,-42.143	0/1:59:26,33:26:924:33:1179:-88.5863,0,-65.7169	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.081	0/1:50:38,12:38:1356:12:428:-23.8073,0,-107.289	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.43	0/1:68:38,30:38:1360:30:1080:-77.0432,0,-102.231	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:83:35,48:35:1252:48:1724:-130.452,0,-87.9996	0/0:142:142,0:142:5064:0:0:0,-42.7463,-455.871	0/0:38:37,1:37:1320:1:36:0,-7.84086,-115.504	0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.119	0/1:100:64,36:64:2273:36:1287:-86.0304,0,-174.728	0/0:116:115,0:115:4066:0:0:0,-34.6184,-365.763	0/1:33:11,22:11:392:22:792:-61.6717,0,-25.6861	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:56:33,23:33:1180:23:828:-57.9864,0,-89.6504	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:109:109,0:109:3900:0:0:0,-32.8123,-351.175	0/1:96:36,60:36:1288:60:2156:-165.337,0,-87.3247	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.124	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.43	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:61:29,32:29:1027:32:1152:-85.3996,0,-74.3793	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/1:114:61,53:61:2168:53:1885:-135.609,0,-161.07	0/0:67:67,0:67:2376:0:0:0,-20.169,-214.099	0/1:51:28,23:28:996:23:828:-59.4916,0,-74.6024	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.96	0/1:148:78,70:78:2792:70:2494:-180.158,0,-206.968	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6685	0/1:79:48,31:48:1710:31:1116:-76.7791,0,-130.403	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.42	0/1:35:26,9:26:920:9:324:-18.5779,0,-72.581	0/1:75:42,33:42:1491:33:1184:-84.0634,0,-111.907	0/1:70:27,43:27:960:43:1548:-118.533,0,-65.6318	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:104:104,0:104:3715:0:0:0,-31.3071,-334.552
chr10	438072	.	CCA	GCA,CCG	107566	PASS	AB=0.405217,0.588696;ABP=182.483,160.172;AC=139,47;AF=0.747312,0.252688;AN=186;AO=2934,1357;CIGAR=1X2M,2M1X;DP=4310;DPB=4490.33;DPRA=0,1.07961;EPP=217.23,2941.02;EPPR=16.0391;GTI=0;LEN=1,1;MEANALT=1.65591,2.16;MQM=59.9765,59.9388;MQMR=60;NS=93;NUMALT=2;ODDS=0.125546;PAIRED=0,0;PAIREDR=0;PAO=400,70;PQA=14152,2356;PQR=2356;PRO=70;QA=104162,47919;QR=205;RO=6;RPL=1198,1;RPP=217.23,2941.02;RPPR=16.0391;RPR=1736,1356;RUN=1,1;SAF=0,0;SAP=6374.11,2949.7;SAR=2934,1357;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:21:0,8,13:0:0:8,13:288,454:-60.781,-37.2775,-34.8693,-23.8592,0,-19.9458	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/2:87:0,20,65:0:0:20,65:720,2324:-248.316,-189.566,-183.546,-58.8165,0,-39.2496	1/2:91:0,21,70:0:0:21,70:756,2485:-264.517,-202.83,-196.508,-62.0456,0,-40.9735	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	1/2:14:0,9,5:0:0:9,5:324,180:-41.4837,-15.0469,-12.3376,-26.7966,0,-25.2914	1/2:45:0,20,24:0:0:20,24:720,849:-127.896,-69.1445,-63.1239,-58.7483,0,-51.5236	1/2:25:0,11,14:0:0:11,14:396,491:-72.619,-40.3067,-36.9954,-32.668,0,-28.4536	1/2:34:0,14,20:0:0:14,20:504,697:-98.1586,-57.0301,-52.8156,-41.4837,0,-35.4631	1/2:38:0,18,20:0:0:18,20:640,712:-110.496,-58.341,-52.9225,-52.5108,0,-46.4902	1/2:51:0,35,16:0:0:35,16:1228,557:-145.573,-45.6391,-35.103,-100.283,0,-95.4662	1/2:89:0,42,45:0:0:42,45:1470,1573:-247.548,-127.95,-115.306,-119.589,0,-106.043	1/1:69:0,68,0:0:0:68,0:2355,0:-211.842,-20.47,0,-211.842,-20.47,-211.842	1/1:33:0,33,0:0:0:33,0:1184,0:-106.711,-9.93399,0,-106.711,-9.93399,-106.711	1/1:71:0,71,0:0:0:71,0:2479,0:-223.361,-21.3731,0,-223.361,-21.3731,-223.361	1/1:41:0,40,0:0:0:40,0:1420,0:-127.738,-12.0412,0,-127.738,-12.0412,-127.738	1/2:36:0,18,18:0:0:18,18:618,636:-102.321,-52.1495,-46.731,-50.5197,0,-45.1012	1/2:27:0,14,13:0:0:14,13:485,445:-75.8804,-36.462,-32.2475,-39.7626,0,-35.8492	1/2:37:0,23,14:0:0:23,14:794,487:-104.45,-39.9448,-33.0211,-64.8521,0,-60.6377	1/2:74:0,19,55:0:0:19,55:654,1950:-212.222,-159.111,-153.391,-53.458,0,-36.9013	1/2:82:0,32,50:0:0:32,50:1148,1755:-236.82,-143.179,-133.546,-93.9969,0,-78.9454	1/2:27:0,5,22:0:0:5,22:180,774:-76.6433,-61.9632,-60.4581,-13.7844,0,-7.16175	1/2:22:0,5,17:0:0:5,17:167,608:-63.4485,-49.9345,-48.4294,-13.8533,0,-8.73575	1/2:9:0,3,6:0:0:3,6:108,216:-26.7966,-17.9843,-17.0812,-9.17208,0,-7.3659	1/2:35:0,7,28:0:0:7,28:248,996:-101.729,-81.526,-79.4188,-20.557,0,-12.1281	1/1:58:0,58,0:0:0:58,0:2066,0:-185.855,-17.4597,0,-185.855,-17.4597,-185.855	1/1:44:0,44,0:0:0:44,0:1580,0:-142.492,-13.2453,0,-142.492,-13.2453,-142.492	1/2:23:0,8,15:0:0:8,15:288,525:-66.5654,-43.0626,-40.6544,-23.8592,0,-19.3437	1/2:120:0,31,88:0:0:31,88:1099,3145:-345.909,-256.38,-247.048,-89.4999,0,-63.0093	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/1:14:0,14,0:0:0:14,0:495,0:-44.883,-4.21442,0,-44.883,-4.21442,-44.883	1/1:79:0,79,0:0:0:79,0:2844,0:-256.197,-23.7814,0,-256.197,-23.7814,-256.197	1/1:37:0,36,1:0:0:36,1:1280,36:-115.142,-10.8371,0,-112.205,-7.53984,-111.904	1/1:151:0,151,0:0:0:151,0:5401,0:-486.217,-45.4555,0,-486.217,-45.4555,-486.217	1/1:78:0,78,0:0:0:78,0:2804,0:-252.599,-23.4803,0,-252.599,-23.4803,-252.599	1/1:67:0,67,0:0:0:67,0:2396,0:-215.897,-20.169,0,-215.897,-20.169,-215.897	1/1:111:0,111,0:0:0:111,0:3946,0:-354.907,-33.4143,0,-354.907,-33.4143,-354.907	1/2:24:0,4,20:0:0:4,20:144,690:-68.1484,-56.3962,-55.1921,-12.1095,0,-6.0889	1/1:48:1,47,0:1:28:47,0:1668,0:-147.607,-11.6497,0,-147.908,-14.1484,-150.125	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/2:52:0,19,33:0:0:19,33:684,1153:-149.955,-94.14,-88.4204,-56.1708,0,-46.2368	1/2:35:0,11,24:0:0:11,24:372,847:-99.4738,-69.324,-66.0127,-30.4925,0,-23.2678	1/2:44:0,11,33:0:0:11,33:392,1171:-127.716,-95.7627,-92.4514,-32.3087,0,-22.3747	1/2:57:0,33,24:0:0:33,24:1179,838:-164.583,-68.4539,-58.5199,-96.4249,0,-89.2002	1/1:52:1,51,0:1:36:51,0:1766,0:-155.618,-12.0553,0,-155.919,-15.3525,-158.857	1/1:9:0,9,0:0:0:9,0:324,0:-29.1471,-2.70927,0,-29.1471,-2.70927,-29.1471	1/1:22:0,22,0:0:0:22,0:783,0:-70.4339,-6.62266,0,-70.4339,-6.62266,-70.4339	1/2:52:0,17,35:0:0:17,35:597,1248:-150.675,-102.089,-96.9713,-48.9386,0,-38.4026	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/2:57:0,23,34:0:0:23,34:819,1220:-166.623,-99.8718,-92.9481,-67.1079,0,-56.8729	1/1:20:0,20,0:0:0:20,0:701,0:-63.0586,-6.0206,0,-63.0586,-6.0206,-63.0586	1/1:56:0,56,0:0:0:56,0:2008,0:-180.993,-16.8577,0,-180.993,-16.8577,-180.993	1/2:39:0,17,22:0:0:17,22:608,771:-112.668,-63.0876,-57.9701,-49.9345,0,-43.3119	1/2:36:0,10,26:0:0:10,26:351,928:-104.043,-75.4873,-72.477,-28.4285,0,-20.6017	.:.:.:.:.:.:.:.	1/1:46:0,46,0:0:0:46,0:1643,0:-148.158,-13.8474,0,-148.158,-13.8474,-148.158	1/2:10:0,3,7:0:0:3,7:108,248:-29.2639,-20.4495,-19.5464,-9.17208,0,-7.06487	1/1:32:0,31,1:0:0:31,1:1112,36:-100.032,-9.33193,0,-97.0941,-6.39451,-96.79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chr10	440819	.	A	G	201785	PASS	AB=0.574775;ABP=336.845;AC=136;AF=0.723404;AN=188;AO=9570;CIGAR=1X;DP=12505;DPB=12505;DPRA=0;EPP=20481.1;EPPR=6339.39;GTI=2;LEN=1;MEANALT=1.05319;MQM=59.9862;MQMR=59.9341;NS=94;NUMALT=1;ODDS=0.538026;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=342222;QR=102976;RO=2930;RPL=9535;RPP=20481.1;RPPR=6339.39;RPR=35;RUN=1;SAF=9570;SAP=20784;SAR=0;SRF=2930;SRP=6365.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:5,14:5:172:14:504:-39.9785,0,-10.0984	1/1:182:6,176:6:216:176:6252:-542.985,-34.9969,0	0/1:141:70,71:70:2457:71:2556:-187.844,0,-178.94	0/1:289:128,161:128:4485:161:5739:-429.628,0,-316.26	0/1:123:48,74:48:1661:74:2642:-201.039,0,-112.788	0/1:78:26,52:26:928:52:1864:-144.559,0,-60.3579	0/1:174:77,97:77:2681:97:3456:-258.872,0,-189.156	0/1:165:79,86:79:2772:86:3088:-228.477,0,-200.055	0/1:143:59,82:59:2049:82:2917:-220.012,0,-141.93	0/1:69:26,43:26:889:43:1540:-118.122,0,-59.5493	0/1:64:21,43:21:752:43:1540:-119.627,0,-48.6539	0/1:89:37,52:37:1300:52:1857:-140.616,0,-90.5096	1/1:92:0,92:0:0:92:3286:-295.959,-27.6948,0	1/1:99:0,99:0:0:99:3538:-318.628,-29.802,0	1/1:98:0,98:0:0:98:3510:-316.109,-29.5009,0	1/1:78:0,78:0:0:78:2785:-250.889,-23.4803,0	0/1:63:27,36:27:960:36:1283:-96.8077,0,-67.7514	0/1:79:31,47:31:1100:47:1688:-128.514,0,-75.6154	0/1:60:24,36:24:845:36:1292:-98.522,0,-58.3053	0/1:316:110,206:110:3889:206:7387:-569.748,0,-255.082	0/1:253:78,175:78:2713:175:6237:-485.249,0,-168.252	0/1:194:123,71:123:4321:71:2552:-171.53,0,-330.603	0/1:126:67,59:67:2357:59:2111:-152.329,0,-174.459	0/1:105:52,53:52:1817:53:1904:-140.03,0,-132.197	0/1:135:71,64:71:2469:64:2296:-166.262,0,-181.827	1/1:481:0,481:0:0:481:17190:-1546.73,-144.795,0	1/1:257:0,257:0:0:257:9169:-825.182,-77.3647,0	0/1:36:18,18:18:644:18:640:-47.0917,0,-47.4535	0/1:414:191,223:191:6645:223:7983:-593.863,0,-473.519	1/1:183:0,183:0:0:183:6560:-590.472,-55.0885,0	1/1:224:0,224:0:0:224:8009:-720.83,-67.4307,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:22:15,7:15:532:7:252:-16.4063,0,-41.5904	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	1/1:280:0,280:0:0:280:10009:-900.72,-84.2884,0	0/1:256:121,135:121:4230:135:4805:-355.54,0,-303.766	1/1:119:0,119:0:0:119:4260:-383.579,-35.8226,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:157:84,73:84:2927:73:2618:-188.605,0,-216.39	0/1:55:22,33:22:780:33:1188:-90.6719,0,-53.9664	0/1:161:47,114:47:1632:114:4095:-320.268,0,-98.7023	0/1:98:33,65:33:1176:65:2327:-180.188,0,-76.6468	1/1:74:0,74:0:0:74:2608:-234.967,-22.2762,0	1/1:257:0,257:0:0:257:9184:-826.529,-77.3647,0	1/1:128:0,128:0:0:128:4594:-413.623,-38.5318,0	0/1:218:101,117:101:3569:117:4180:-310.758,0,-255.792	1/1:181:0,181:0:0:181:6472:-582.564,-54.4864,0	0/1:183:58,125:58:2032:125:4466:-347.021,0,-128.065	1/1:270:3,267:3:104:267:9531:-848.045,-71.5753,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:200:87,113:87:3045:113:4052:-304.661,0,-214.077	0/1:73:33,40:33:1172:40:1421:-106.21,0,-83.8123	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	1/1:183:0,183:0:0:183:6526:-587.423,-55.0885,0	0/1:62:28,34:28:973:34:1205:-90.09,0,-69.2162	0/1:17:12,5:12:432:5:176:-11.0675,0,-34.1037	0/1:18:7,11:7:248:11:396:-30.5642,0,-17.2457	1/1:108:0,108:0:0:108:3856:-347.234,-32.5112,0	0/1:131:46,85:46:1628:85:3022:-232.773,0,-107.374	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:274:122,152:122:4282:152:5456:-408.684,0,-303.007	1/1:291:0,291:0:0:291:10408:-936.637,-87.5997,0	1/1:88:1,87:1:36:87:3090:-274.727,-22.8924,0	1/1:110:0,110:0:0:110:3937:-354.52,-33.1133,0	0/1:308:96,212:96:3416:212:7564:-588.084,0,-214.931	1/1:77:1,76:1:36:76:2718:-241.264,-19.581,0	0/1:30:9,20:9:324:20:720:-56.0391,0,-20.4162	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:114:0,114:0:0:114:4068:-366.276,-34.3174,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:158:65,93:65:2296:93:3335:-252.804,0,-159.34	1/1:87:0,87:0:0:87:3107:-279.857,-26.1896,0	1/1:202:0,202:0:0:202:7218:-649.673,-60.8081,0	0/1:245:108,137:108:3812:137:4916:-368.837,0,-269.531	1/1:98:0,98:0:0:98:3509:-316.018,-29.5009,0	1/1:85:1,84:1:36:84:3000:-266.633,-21.9893,0	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/1:155:86,69:86:3020:69:2476:-176.434,0,-225.376	1/1:154:0,154:0:0:154:5508:-495.845,-46.3586,0	0/1:282:125,157:125:4401:157:5624:-421.39,0,-311.379	1/1:172:0,172:0:0:172:6178:-556.112,-51.7772,0	0/1:80:38,42:38:1348:42:1506:-111.752,0,-97.5379	1/1:138:0,138:0:0:138:4942:-444.928,-41.5421,0	0/1:207:69,138:69:2460:138:4960:-384.234,0,-159.342	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:70:27,43:27:940:43:1548:-118.541,0,-63.8415	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	0/1:56:23,33:23:828:33:1188:-90.3709,0,-57.9166	0/1:119:49,70:49:1743:70:2516:-190.869,0,-121.331	0/1:73:29,44:29:1040:44:1580:-120.516,0,-71.9392	1/1:278:0,278:0:0:278:9924:-893.042,-83.6863,0	1/1:163:0,163:0:0:163:5825:-524.359,-49.0679,0
chr10	440921	.	T	C	44316.8	PASS	AB=0.47098;ABP=45.8615;AC=54;AF=0.287234;AN=188;AO=2790;CIGAR=1X;DP=10531;DPB=10531;DPRA=1.13875;EPP=6061.42;EPPR=16797.2;GTI=0;LEN=1;MEANALT=1.05085;MQM=52.8932;MQMR=59.9663;NS=94;NUMALT=1;ODDS=1.87297;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98380;QR=276533;RO=7734;RPL=0;RPP=6061.42;RPPR=16797.2;RPR=2790;RUN=1;SAF=0;SAP=6061.42;SAR=2790;SRF=0;SRP=16797.2;SRR=7734;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:7,28:7:252:28:977:-77.5045,0,-12.4929	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.425	0/1:189:107,82:107:3828:82:2872:-200.036,0,-287.595	0/1:252:159,93:159:5703:93:3305:-220.685,0,-437.526	0/1:84:54,30:54:1931:30:1043:-68.5507,0,-148.775	0/1:118:45,73:45:1612:73:2620:-199.714,0,-109.84	0/1:172:73,99:73:2628:99:3493:-261.885,0,-184.989	0/1:182:85,97:85:3038:97:3428:-252.019,0,-218.861	0/1:111:36,75:36:1284:75:2625:-202.097,0,-82.4458	0/1:141:60,81:60:2147:81:2861:-214.114,0,-151.052	0/1:61:42,19:42:1504:19:672:-42.361,0,-117.292	0/1:59:36,23:36:1288:23:812:-55.0674,0,-98.4628	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.188	0/0:55:55,0:55:1945:0:0:0,-16.5566,-175.324	0/0:83:82,0:82:2918:0:0:0,-24.6845,-262.495	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/1:62:36,26:36:1288:26:904:-62.5928,0,-97.5597	0/1:49:32,17:32:1152:17:608:-40.1591,0,-89.2397	0/1:34:20,14:20:716:14:485:-33.6399,0,-54.5327	0/1:173:70,103:70:2507:103:3642:-275.324,0,-173.803	0/1:175:91,84:91:3251:84:2968:-213.695,0,-240.131	0/1:124:26,98:26:936:98:3496:-275.311,0,-47.2317	0/1:110:47,63:47:1680:63:2224:-166.43,0,-118.373	0/1:115:50,65:50:1792:65:2279:-170.249,0,-126.944	0/1:136:64,72:64:2284:72:2501:-183.718,0,-164.882	0/0:361:361,0:361:12909:0:0:0,-108.672,-1161.62	0/0:272:272,0:272:9725:0:0:0,-81.8802,-875.185	0/1:29:23,6:23:824:6:212:-10.6697,0,-65.7534	0/1:359:212,147:212:7590:147:5205:-359.607,0,-575.067	0/0:194:192,2:192:6880:2:72:0,-51.5679,-612.428	0/0:202:201,0:201:7216:0:0:0,-60.507,-649.122	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:29:16,13:16:572:13:451:-32.1358,0,-43.0836	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:184:184,0:184:6591:0:0:0,-55.3895,-593.269	0/1:212:108,104:108:3868:104:3675:-266.255,0,-284.497	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	1/1:6:0,6:0:0:6:216:-19.7624,-1.80618,0	0/1:142:96,46:96:3444:46:1622:-103.328,0,-267.426	0/1:34:19,15:19:680:15:519:-36.5909,0,-51.2941	0/1:93:58,35:58:2076:35:1244:-83.8089,0,-159.115	0/1:59:33,26:33:1188:26:886:-61.9677,0,-89.4678	0/0:55:55,0:55:1948:0:0:0,-16.5566,-175.596	0/0:102:102,0:102:3651:0:0:0,-30.7051,-328.794	0/0:123:123,0:123:4368:0:0:0,-37.0267,-393.295	0/1:183:91,92:91:3250:92:3296:-241.026,0,-237.632	0/0:142:142,0:142:5069:0:0:0,-42.7463,-456.346	0/1:145:92,52:92:3274:52:1835:-121.119,0,-251.17	0/0:155:154,1:154:5516:1:32:0,-43.4603,-493.362	0/1:9:6,3:6:216:3:108:-7.35161,0,-17.0812	0/1:232:97,135:97:3467:135:4784:-359.344,0,-242.403	0/1:48:26,22:26:936:22:775:-55.5298,0,-70.11	1/1:13:0,13:0:0:13:464:-41.9957,-3.91339,0	0/0:136:136,0:136:4864:0:0:0,-40.9401,-437.908	0/1:86:49,37:49:1748:37:1288:-89.998,0,-131.716	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:21:14,7:14:504:7:252:-16.6747,0,-39.3765	0/0:107:107,0:107:3832:0:0:0,-32.2102,-345.077	0/1:105:59,46:59:2120:46:1611:-113.487,0,-159.414	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:274:172,100:172:6162:100:3551:-236.628,0,-472.445	0/0:250:248,2:248:8876:2:72:0,-68.4305,-791.998	0/0:95:93,2:93:3317:2:72:0,-21.7611,-291.911	0/0:139:138,1:138:4940:1:36:0,-38.2449,-441.147	0/1:187:84,102:84:2993:102:3622:-269.373,0,-213.25	0/0:158:158,0:158:5664:0:0:0,-47.5627,-509.788	0/1:16:10,6:10:360:6:212:-14.5794,0,-27.9278	0/0:107:107,0:107:3832:0:0:0,-32.2102,-345.077	0/0:63:62,1:62:2206:1:36:0,-15.3666,-195.206	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:198:73,125:73:2587:125:4402:-335.114,0,-173.475	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:223:222,0:222:7906:0:0:0,-66.8287,-711.21	0/1:246:164,82:164:5869:82:2880:-184.742,0,-454.266	0/0:151:148,3:148:5304:3:104:0,-35.773,-467.812	0/0:83:83,0:83:2956:0:0:0,-24.9855,-266.275	0/1:20:10,10:10:348:10:360:-26.4202,0,-25.6345	0/1:149:98,51:98:3512:51:1828:-119.715,0,-271.432	0/0:138:138,0:138:4928:0:0:0,-41.5421,-443.672	0/1:188:107,81:107:3840:81:2839:-198.781,0,-289.202	0/0:116:116,0:116:4126:0:0:0,-34.9195,-371.521	0/1:49:31,18:31:1108:18:605:-39.9518,0,-85.2805	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.401	0/1:113:64,49:64:2282:49:1691:-117.87,0,-171.466	0/0:46:46,0:46:1638:0:0:0,-13.8474,-147.707	0/1:86:43,43:43:1544:43:1504:-108.745,0,-113.364	0/0:95:95,0:95:3379:0:0:0,-28.5978,-304.327	0/1:34:17,17:17:612:17:590:-43.1214,0,-45.1784	0/1:87:55,32:55:1968:32:1098:-72.8105,0,-151.205	0/1:43:28,15:28:1008:15:516:-33.7561,0,-77.9342	0/0:174:174,0:174:6185:0:0:0,-52.3792,-556.744	0/0:111:111,0:111:3951:0:0:0,-33.4143,-355.78
chr10	440947	.	CA	CG,TG	229014	PASS	AB=0.518352,0.480651;ABP=20.6248,22.5896;AC=134,54;AF=0.712766,0.287234;AN=188;AO=7799,2920;CIGAR=1M1X,2X;DP=10734;DPB=10734;DPRA=12.2597,1.14238;EPP=16834.3,6283.05;EPPR=11.6962;GTI=0;LEN=1,2;MEANALT=1.70652,2.10714;MQM=59.9659,52.8182;MQMR=60;NS=94;NUMALT=2;ODDS=3.42867;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=278298,104081;QR=128;RO=4;RPL=7787,2913;RPP=16834.3,6283.05;RPPR=11.6962;RPR=12,7;RUN=1,1;SAF=0,0;SAP=16938.3,6343.71;SAR=7799,2920;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:36:0,5,31:0:0:5,31:180,1103:-104.711,-90.0234,-88.5182,-15.0469,0,-5.71498	1/1:89:1,86,1:1:36:86,1:3088,36:-274.549,-22.9512,0,-271.913,-22.9512,-274.549	1/2:196:0,109,87:0:0:109,87:3889,3101:-568.362,-251.325,-218.512,-317.392,0,-291.203	1/2:257:0,157,100:0:0:157,100:5609,3544:-745.224,-287.909,-240.648,-457.669,0,-427.566	1/2:88:0,55,33:0:0:55,33:1959,1175:-255.386,-95.7138,-79.1572,-160.027,0,-150.093	1/2:118:0,43,75:0:0:43,75:1515,2676:-341.028,-217.687,-204.742,-123.695,0,-101.118	1/2:177:0,72,105:0:0:72,105:2554,3725:-510.405,-302.323,-280.648,-208.436,0,-176.828	1/2:187:0,85,102:0:0:85,102:3035,3609:-540.034,-292.596,-267.009,-247.792,0,-217.087	1/2:115:0,35,80:0:0:35,80:1252,2852:-333.72,-231.628,-221.092,-102.449,0,-78.3666	1/2:144:0,62,82:0:0:62,82:2212,2908:-416.378,-236.052,-217.388,-180.681,0,-155.997	1/2:63:0,42,21:0:0:42,21:1499,754:-183.961,-61.7581,-49.1148,-122.561,0,-116.239	1/2:62:0,38,24:0:0:38,24:1355,856:-179.757,-69.3002,-57.8611,-110.811,0,-103.586	1/1:77:0,77,0:0:0:77,0:2738,0:-246.656,-23.1793,0,-246.656,-23.1793,-246.656	1/1:55:0,55,0:0:0:55,0:1964,0:-177.035,-16.5567,0,-177.035,-16.5567,-177.035	1/1:85:0,85,0:0:0:85,0:3052,0:-274.909,-25.5876,0,-274.909,-25.5876,-274.909	1/1:70:0,70,0:0:0:70,0:2507,0:-225.882,-21.0721,0,-225.882,-21.0721,-225.882	1/2:63:0,36,27:0:0:36,27:1292,962:-183.625,-78.2347,-67.3976,-105.747,0,-97.6189	1/2:51:0,33,18:0:0:33,18:1183,646:-149.386,-52.9,-42.966,-96.8442,0,-91.4256	1/2:34:0,20,14:0:0:20,14:720,504:-100.118,-41.3688,-35.3482,-59.1082,0,-54.8938	1/2:182:0,70,112:0:0:70,112:2487,4001:-528.562,-325.906,-304.834,-203.011,0,-169.296	1/2:181:0,93,87:0:0:93,87:3311,3076:-519.855,-249.996,-222,-269.992,0,-243.802	1/2:132:0,25,107:0:0:25,107:888,3824:-382.846,-310.489,-302.963,-72.7127,0,-40.5025	1/2:114:0,47,66:0:0:47,66:1667,2364:-327.701,-191.888,-177.74,-135.808,0,-115.94	1/2:121:0,50,71:0:0:50,71:1792,2515:-350.287,-204.132,-189.08,-146.511,0,-125.138	1/2:137:0,64,73:0:0:64,73:2291,2600:-398.441,-211.613,-192.347,-187.185,0,-165.21	1/1:365:0,365,0:0:0:365,0:12996,0:-1169.44,-109.876,0,-1169.44,-109.876,-1169.44	1/1:269:0,269,0:0:0:269,0:9627,0:-866.373,-80.9771,0,-866.373,-80.9771,-866.373	1/2:30:0,23,7:0:0:23,7:807,250:-86.3789,-20.7085,-13.7848,-66.0255,0,-63.9183	1/2:367:0,218,149:0:0:218,149:7800,5334:-1070.48,-434.429,-368.805,-636.406,0,-591.552	1/1:197:0,196,1:0:0:196,1:6970,36:-627,-59.0019,0,-624.067,-55.7097,-623.766	1/1:202:0,202,0:0:0:202,0:7158,0:-644.279,-60.8081,0,-644.279,-60.8081,-644.279	1/1:9:0,9,0:0:0:9,0:316,0:-28.7789,-2.70927,0,-28.7789,-2.70927,-28.7789	1/2:31:0,16,15:0:0:16,15:576,529:-90.3592,-43.3565,-38.54,-47.3585,0,-42.8431	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:11:0,11,0:0:0:11,0:388,0:-35.2574,-3.31133,0,-35.2574,-3.31133,-35.2574	1/1:181:0,181,0:0:0:181,0:6494,0:-584.541,-54.4864,0,-584.541,-54.4864,-584.541	1/2:214:0,107,106:0:0:107,106:3809,3766:-616.445,-306.003,-273.792,-310.438,0,-278.529	1/1:76:0,76,0:0:0:76,0:2712,0:-244.322,-22.8783,0,-244.322,-22.8783,-244.322	2/2:6:0,0,6:0:0:0,6:0,216:-19.7624,-19.7624,-19.7624,-1.80618,-1.80618,0	1/2:145:0,98,47:0:0:98,47:3501,1664:-421.137,-135.694,-106.193,-285.798,0,-271.649	1/2:35:0,19,16:0:0:19,16:676,576:-102.198,-47.107,-41.3874,-55.4484,0,-50.6319	1/2:98:0,58,40:0:0:58,40:2070,1430:-285.037,-116.284,-98.8239,-169.11,0,-157.068	1/2:63:0,36,27:0:0:36,27:1283,968:-183.458,-78.8786,-68.0415,-104.936,0,-96.8077	1/1:55:0,55,0:0:0:55,0:1946,0:-175.415,-16.5567,0,-175.415,-16.5567,-175.415	1/1:105:0,105,0:0:0:105,0:3729,0:-335.812,-31.6082,0,-335.812,-31.6082,-335.812	1/1:127:0,127,0:0:0:127,0:4488,0:-404.092,-38.2308,0,-404.092,-38.2308,-404.092	1/2:187:0,93,94:0:0:93,94:3317,3341:-542.257,-271.859,-243.864,-270.753,0,-242.457	1/1:147:1,146,0:1:25:146,0:5228,0:-468.15,-41.7515,0,-468.451,-43.9504,-470.399	1/2:148:0,92,56:0:0:92,56:3287,1988:-429.537,-161.537,-133.843,-268.355,0,-251.497	1/1:157:0,156,0:0:0:156,0:5578,0:-501.779,-46.9607,0,-501.779,-46.9607,-501.779	1/2:10:0,6,4:0:0:6,4:216,142:-29.5357,-11.9079,-10.1018,-17.9843,0,-16.7802	1/2:235:0,97,138:0:0:97,138:3470,4940:-684.602,-401.647,-372.448,-283.312,0,-241.769	1/2:48:0,26,22:0:0:26,22:932,790:-140.717,-64.7028,-56.8761,-76.3721,0,-69.7494	2/2:13:0,0,13:0:0:0,13:0,468:-42.3529,-42.3529,-42.3529,-3.91339,-3.91339,0	1/1:141:0,141,0:0:0:141,0:5025,0:-452.397,-42.4452,0,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chr10	440963	.	T	A	159410	PASS	AB=0.516916;ABP=17.7771;AC=134;AF=0.712766;AN=188;AO=7697;CIGAR=1X;DP=10604;DPB=10604;DPRA=12.111;EPP=16716.8;EPPR=6274.22;GTI=0;LEN=1;MEANALT=1.1413;MQM=59.963;MQMR=52.8328;NS=94;NUMALT=1;ODDS=3.23928;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275247;QR=103543;RO=2888;RPL=7697;RPP=16716.8;RPPR=6274.22;RPR=0;RUN=1;SAF=0;SAP=16716.8;SAR=7697;SRF=0;SRP=6274.22;SRR=2888;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:31,5:31:1116:5:180:-5.71499,0,-89.6812	1/1:91:1,90:1:36:90:3224:-286.784,-23.7955,0	0/1:195:86,109:86:3076:109:3916:-293.931,0,-216.497	0/1:255:99,155:99:3545:155:5534:-421.362,0,-241.256	0/1:89:33,56:33:1184:56:1993:-152.851,0,-79.5216	0/1:117:74,43:74:2660:43:1532:-102.949,0,-203.6	0/1:175:102,73:102:3660:73:2601:-181.651,0,-275.334	0/1:183:102,81:102:3637:81:2896:-205.788,0,-269.936	0/1:111:80,31:80:2861:31:1112:-66.977,0,-222.736	0/1:140:80,60:80:2868:60:2156:-152.163,0,-215.7	0/1:62:20,42:20:720:42:1496:-116.271,0,-46.369	0/1:61:25,36:25:892:36:1296:-98.5811,0,-61.5989	1/1:77:0,77:0:0:77:2762:-248.818,-23.1793,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	0/1:62:26,36:26:936:36:1283:-97.1088,0,-65.2068	0/1:49:18,31:18:644:31:1108:-85.2805,0,-43.3892	0/1:32:13,19:13:468:19:684:-52.2574,0,-32.7199	0/1:179:110,69:110:3952:69:2476:-169.209,0,-301.312	0/1:179:86,93:86:3077:93:3324:-245.494,0,-222.262	0/1:132:106,26:106:3792:26:936:-44.8235,0,-299.548	0/1:112:65,47:65:2328:47:1684:-118.132,0,-175.251	0/1:119:69,50:69:2480:50:1788:-125.38,0,-186.422	0/1:133:71,62:71:2540:62:2228:-160.747,0,-188.171	1/1:361:0,361:0:0:361:12883:-1159.22,-108.672,0	1/1:264:0,264:0:0:264:9484:-853.5,-79.4719,0	0/1:30:7,23:7:252:23:820:-65.0916,0,-13.9654	0/1:363:147,215:147:5288:215:7705:-584.298,0,-365.739	1/1:193:1,191:1:36:191:6829:-611.079,-54.5642,0	1/1:196:0,192:0:0:192:6873:-618.278,-57.7978,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:31:15,16:15:536:16:572:-42.4815,0,-39.1727	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:182:0,181:0:0:181:6468:-581.845,-54.4864,0	0/1:214:107,107:107:3832:107:3832:-280.656,0,-279.486	1/1:77:0,77:0:0:77:2754:-248.101,-23.1793,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7624	0/1:144:46,98:46:1652:98:3505:-272.307,0,-105.41	0/1:33:14,18:14:504:18:648:-48.6969,0,-35.5001	0/1:96:40,56:40:1436:56:2016:-152.814,0,-100.045	0/1:63:27,35:27:972:35:1256:-94.3216,0,-68.3397	1/1:55:0,55:0:0:55:1967:-177.304,-16.5567,0	1/1:106:0,106:0:0:106:3775:-339.949,-31.9092,0	1/1:126:0,126:0:0:126:4496:-404.792,-37.9298,0	0/1:184:93,91:93:3321:91:3233:-235.802,0,-242.97	1/1:143:0,143:0:0:143:5090:-458.243,-43.0473,0	0/1:144:55,89:55:1976:89:3180:-243.076,0,-133.963	1/1:157:0,157:0:0:157:5586:-502.862,-47.2617,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.2844	0/1:235:138,96:138:4953:96:3419:-237.123,0,-373.485	0/1:48:22,26:22:788:26:932:-69.7494,0,-56.6966	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.3529	1/1:138:0,138:0:0:138:4929:-443.755,-41.5421,0	0/1:89:39,50:39:1388:50:1775:-133.241,0,-97.944	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9085	1/1:110:0,110:0:0:110:3929:-353.796,-33.1133,0	0/1:105:46,59:46:1656:59:2115:-159.008,0,-117.509	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:276:104,172:104:3724:172:6140:-469.592,0,-251.181	1/1:247:2,245:2:72:245:8791:-784.346,-67.5274,0	1/1:96:0,96:0:0:96:3438:-309.633,-28.8989,0	1/1:136:0,136:0:0:136:4851:-436.743,-40.9401,0	0/1:188:105,83:105:3757:83:2935:-207.79,0,-280.725	1/1:159:0,158:0:0:158:5641:-507.442,-47.5627,0	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.9424	1/1:109:0,109:0:0:109:3902:-351.373,-32.8123,0	1/1:62:0,62:0:0:62:2200:-198.264,-18.6639,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	0/1:199:129,70:129:4636:70:2498:-165.168,0,-355.465	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	1/1:223:0,223:0:0:223:7984:-718.582,-67.1297,0	0/1:250:84,166:84:3020:166:5956:-460.888,0,-196.069	1/1:154:3,149:3:108:149:5315:-468.435,-36.0662,0	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.4202	0/1:149:53,93:53:1900:93:3332:-255.783,0,-126.726	1/1:137:0,137:0:0:137:4878:-439.172,-41.2411,0	0/1:190:84,106:84:3004:106:3798:-284.822,0,-212.229	1/1:117:0,117:0:0:117:4188:-377.099,-35.2205,0	0/1:51:19,32:19:684:32:1140:-87.5561,0,-46.4465	1/1:76:0,76:0:0:76:2715:-244.591,-22.8783,0	0/1:115:51,64:51:1828:64:2287:-171.469,0,-129.412	1/1:46:0,45:0:0:45:1616:-145.37,-13.5464,0	0/1:89:45,44:45:1612:44:1576:-115.34,0,-117.442	1/1:91:0,91:0:0:91:3276:-295.059,-27.3937,0	0/1:34:18,16:18:648:16:576:-41.94,0,-48.3383	0/1:89:34,55:34:1224:55:1964:-150.244,0,-83.4949	0/1:44:16,28:16:572:28:1004:-77.2727,0,-38.4838	1/1:173:0,173:0:0:173:6165:-554.942,-52.0782,0	1/1:112:0,111:0:0:111:3981:-358.119,-33.4143,0
chr10	441769	.	G	T	215506	PASS	AB=0.555712;ABP=213.993;AC=135;AF=0.718085;AN=188;AO=10375;CIGAR=1X;DP=13860;DPB=13860;DPRA=0;EPP=22532;EPPR=7507.74;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9578;MQMR=59.9963;NS=94;NUMALT=1;ODDS=1.92268;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=370763;QR=124256;RO=3484;RPL=0;RPP=22532;RPPR=7507.74;RPR=10375;RUN=1;SAF=10375;SAP=22532;SAR=0;SRF=3484;SRP=7568.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:29,43:29:1017:43:1544:-117.579,0,-70.1657	1/1:218:1,217:1:36:217:7754:-694.291,-62.0263,0	0/1:192:75,117:75:2655:117:4173:-317.954,0,-181.387	0/1:345:141,204:141:5040:204:7290:-552.296,0,-349.891	0/1:159:81,78:81:2866:78:2770:-201.677,0,-210.312	0/1:91:51,40:51:1798:40:1425:-101.153,0,-134.704	0/1:236:88,148:88:3126:148:5285:-404.742,0,-210.521	0/1:240:103,137:103:3643:137:4903:-369.152,0,-255.826	0/1:161:76,85:76:2720:85:3031:-224.554,0,-196.578	0/1:158:59,99:59:2116:99:3544:-271.606,0,-143.146	0/1:57:28,29:28:1008:29:1036:-76.3952,0,-73.8776	0/1:67:26,41:26:921:41:1464:-111.887,0,-63.0362	1/1:72:0,72:0:0:72:2575:-231.999,-21.6742,0	1/1:78:0,78:0:0:78:2779:-250.351,-23.4803,0	1/1:79:0,79:0:0:79:2829:-254.848,-23.7814,0	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	0/1:72:26,46:26:932:46:1652:-127.294,0,-62.5247	0/1:49:25,24:25:900:24:864:-63.3321,0,-66.5705	0/1:40:24,16:24:860:16:576:-40.1338,0,-65.6806	0/1:308:112,196:112:3986:196:7003:-537.617,0,-266.211	0/1:224:100,124:100:3554:124:4428:-331.262,0,-252.636	0/1:181:106,75:106:3753:75:2670:-186.059,0,-283.483	0/1:105:51,54:51:1824:54:1936:-142.908,0,-132.833	0/1:192:77,115:77:2726:115:4116:-312.809,0,-187.783	0/1:128:71,57:71:2533:57:2018:-143.23,0,-189.688	1/1:512:1,511:1:36:511:18289:-1641.99,-150.529,0	1/1:336:0,336:0:0:336:12002:-1080.03,-101.146,0	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/1:440:242,198:242:8661:198:7089:-505.615,0,-647.029	1/1:182:0,182:0:0:182:6504:-585.439,-54.7875,0	1/1:161:0,161:0:0:161:5747:-517.339,-48.4658,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:57:28,29:28:993:29:1044:-77.1161,0,-72.5238	1/1:16:0,16:0:0:16:563:-50.9992,-4.81648,0	1/1:27:0,27:0:0:27:963:-86.9859,-8.12781,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:194:0,194:0:0:194:6944:-625.021,-58.3998,0	0/1:332:143,189:143:5093:189:6776:-509.969,0,-358.573	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:172:71,101:71:2548:101:3606:-272.967,0,-177.793	0/1:47:20,27:20:720:27:963:-72.8375,0,-50.9804	0/1:187:61,126:61:2169:126:4501:-348.904,0,-139.182	0/1:81:38,43:38:1360:43:1548:-115.23,0,-98.3172	1/1:71:0,71:0:0:71:2535:-228.398,-21.3731,0	1/1:209:0,209:0:0:209:7470:-672.345,-62.9153,0	1/1:246:0,246:0:0:246:8793:-791.356,-74.0534,0	0/1:270:103,167:103:3676:167:5984:-457.385,0,-249.766	1/1:209:0,209:0:0:209:7466:-671.985,-62.9153,0	0/1:231:105,126:105:3776:126:4491:-334.817,0,-270.499	1/1:338:0,338:0:0:338:12081:-1087.14,-101.748,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:215:95,120:95:3412:120:4280:-320.648,0,-242.572	0/1:64:34,30:34:1205:30:1076:-77.8869,0,-89.488	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	1/1:207:0,206:0:0:206:7374:-663.487,-62.0122,0	0/1:75:32,43:32:1148:43:1535:-115.865,0,-81.0526	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:34:10,24:10:360:24:852:-66.7654,0,-22.5093	1/1:112:0,112:0:0:112:3996:-359.828,-33.7154,0	0/1:125:52,73:52:1864:73:2602:-196.8,0,-130.411	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:292:133,159:133:4754:159:5690:-424.311,0,-340.114	1/1:338:3,335:3:108:335:11950:-1065.25,-91.673,0	1/1:77:0,77:0:0:77:2721:-245.126,-23.1793,0	1/1:131:0,131:0:0:131:4692:-422.44,-39.4349,0	0/1:306:108,198:108:3857:198:7072:-544.422,0,-255.209	1/1:133:0,133:0:0:133:4776:-429.982,-40.037,0	0/1:25:12,13:12:432:13:455:-33.7562,0,-31.6954	1/1:129:0,129:0:0:129:4601:-414.025,-38.8329,0	1/1:76:0,76:0:0:76:2716:-244.617,-22.8783,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/1:219:108,111:108:3857:111:3947:-289.495,0,-281.399	1/1:107:1,106:1:36:106:3804:-338.959,-28.6119,0	1/1:274:0,274:0:0:274:9787:-880.774,-82.4822,0	0/1:294:139,155:139:4959:155:5549:-411.03,0,-357.952	1/1:182:0,182:0:0:182:6503:-585.355,-54.7875,0	1/1:184:1,183:1:36:183:6526:-583.718,-51.7912,0	0/1:20:8,12:8:284:12:424:-32.4758,0,-19.8828	0/1:177:71,106:71:2547:106:3754:-284.771,0,-176.197	1/1:215:0,215:0:0:215:7696:-692.673,-64.7215,0	0/1:465:213,252:213:7527:252:9023:-672.061,0,-537.493	1/1:122:0,122:0:0:122:4351:-391.766,-36.7257,0	0/1:56:31,25:31:1112:25:892:-63.742,0,-83.5337	1/1:91:0,91:0:0:91:3262:-293.799,-27.3937,0	0/1:141:62,79:62:2212:79:2828:-212.314,0,-156.9	1/1:60:0,60:0:0:60:2151:-193.857,-18.0618,0	0/1:89:37,52:37:1324:52:1854:-140.347,0,-92.6704	1/1:88:0,88:0:0:88:3142:-283.005,-26.4906,0	0/1:69:32,37:32:1152:37:1328:-99.0512,0,-83.2191	0/1:100:43,57:43:1536:57:2035:-153.319,0,-108.43	0/1:80:54,26:54:1940:26:923:-59.3044,0,-150.794	1/1:216:0,216:0:0:216:7686:-691.646,-65.0225,0	1/1:96:0,96:0:0:96:3447:-310.441,-28.8989,0
chr10	441850	.	T	C	216101	PASS	AB=0.510582;ABP=11.7879;AC=136;AF=0.723404;AN=188;AO=10585;CIGAR=1X;DP=15016;DPB=15016;DPRA=0;EPP=22988;EPPR=9609.6;GTI=1;LEN=1;MEANALT=1.05319;MQM=58.4861;MQMR=43.9218;NS=94;NUMALT=1;ODDS=1.2319;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=377956;QR=155548;RO=4424;RPL=0;RPP=22988;RPPR=9609.6;RPR=10585;RUN=1;SAF=0;SAP=22988;SAR=10585;SRF=0;SRP=9609.6;SRR=4424;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:19,27:19:676:27:945:-71.4675,0,-43.7829	1/1:251:0,251:0:0:251:8966:-806.338,-75.5585,0	0/1:269:125,144:125:4387:144:5155:-382.876,0,-306.971	0/1:380:186,194:186:6514:194:6894:-505.259,0,-462.075	0/1:152:75,76:75:2612:76:2720:-199.212,0,-186.275	0/1:60:27,33:27:948:33:1167:-87.2686,0,-66.499	0/1:271:127,144:127:4448:144:5172:-383.768,0,-311.857	0/1:195:94,101:94:3315:101:3615:-266.612,0,-234.461	0/1:112:59,53:59:2056:53:1896:-136.682,0,-147.409	0/1:183:90,93:90:3149:93:3311:-242.94,0,-222.376	0/1:51:21,30:21:752:30:1076:-81.8003,0,-51.4698	0/1:67:31,36:31:1073:36:1284:-95.6,0,-74.4594	1/1:59:0,59:0:0:59:2104:-189.55,-17.7608,0	1/1:54:0,54:0:0:54:1928:-173.752,-16.2556,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:54:0,54:0:0:54:1912:-172.258,-16.2556,0	0/1:68:34,34:34:1193:34:1207:-88.4468,0,-84.6851	0/1:66:31,35:31:1073:35:1244:-92.2095,0,-74.9087	0/1:43:20,23:20:708:23:820:-61.0836,0,-48.8932	0/1:531:258,270:258:9157:270:9655:-709.55,0,-646.895	0/1:253:102,151:102:3575:151:5338:-403.941,0,-240.397	0/1:245:173,72:173:6053:72:2575:-157.865,0,-452.479	0/1:157:80,77:80:2840:77:2744:-199.876,0,-202.522	0/1:160:84,76:84:2890:76:2705:-195.394,0,-207.999	0/1:171:75,96:75:2624:96:3429:-257.311,0,-181.886	1/1:487:0,487:0:0:487:17381:-1559.73,-146.602,0	1/1:249:1,248:1:36:248:8915:-797.642,-71.3582,0	0/1:42:14,28:14:504:28:999:-77.5317,0,-32.3376	0/1:522:277,245:277:9758:245:8750:-628.192,0,-690.838	1/1:227:0,227:0:0:227:8126:-730.757,-68.3338,0	1/1:292:1,291:1:36:291:10423:-933.071,-84.3522,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:33:15,18:15:532:18:645:-48.4237,0,-37.5421	1/1:3:0,3:0:0:3:108:-10.0031,-0.90309,0	1/1:11:0,11:0:0:11:396:-35.9375,-3.31133,0	1/1:20:0,20:0:0:20:712:-64.3977,-6.0206,0	1/1:206:0,206:0:0:206:7344:-659.668,-62.0122,0	0/1:357:186,171:186:6552:171:6079:-439.546,0,-470.977	1/1:50:0,50:0:0:50:1776:-160.033,-15.0515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:478:191,287:191:6753:287:10262:-778.763,0,-455.264	0/1:49:21,28:21:748:28:993:-74.8732,0,-52.0354	0/1:300:173,127:173:6086:127:4538:-317.563,0,-448.472	0/1:64:34,30:34:1204:30:1068:-77.0577,0,-87.0737	1/1:68:0,68:0:0:68:2431:-218.989,-20.47,0	1/1:195:0,195:0:0:195:6929:-622.616,-58.7009,0	1/1:235:0,235:0:0:235:8368:-752.868,-70.7421,0	0/1:336:175,161:175:6208:161:5727:-413.523,0,-445.783	1/1:241:0,240:0:0:240:8562:-770.23,-72.2472,0	0/1:216:103,113:103:3620:113:4044:-298.736,0,-254.405	1/1:301:0,300:0:0:300:10750:-965.445,-90.309,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.22657	0/1:448:185,263:185:6539:263:9404:-711.049,0,-444.046	0/1:92:52,40:52:1810:40:1425:-100.611,0,-128.754	0/1:37:21,16:21:752:16:563:-39.8091,0,-55.9823	1/1:290:1,289:1:36:289:10301:-922.815,-83.7502,0	0/1:103:47,56:47:1645:56:2004:-149.574,0,-115.524	0/1:14:6,8:6:216:8:284:-21.1274,0,-14.7144	0/1:46:26,20:26:911:20:716:-50.8586,0,-66.3586	1/1:118:0,118:0:0:118:4205:-378.347,-35.5215,0	0/1:107:60,47:60:2108:47:1680:-119.277,0,-153.746	1/1:15:0,15:0:0:15:525:-47.4832,-4.51545,0	0/1:292:153,139:153:5344:139:4960:-357.625,0,-375.536	1/1:344:3,341:3:108:341:12203:-1086.75,-93.6185,0	1/1:86:0,86:0:0:86:3073:-276.61,-25.8886,0	1/1:141:0,141:0:0:141:5039:-453.533,-42.4452,0	0/1:356:158,197:158:5551:197:7013:-522.633,0,-381.866	1/1:219:2,217:2:72:217:7782:-693.242,-59.1834,0	0/1:21:13,8:13:464:8:280:-19.2177,0,-35.2318	1/1:122:1,121:1:36:121:4328:-385.889,-33.1274,0	1/1:71:0,71:0:0:71:2518:-226.376,-21.3731,0	1/1:36:0,36:0:0:36:1287:-116.081,-10.8371,0	0/1:260:124,136:124:4330:136:4887:-361.166,0,-305.07	1/1:83:0,83:0:0:83:2961:-266.508,-24.9855,0	1/1:231:0,231:0:0:231:8259:-742.955,-69.5379,0	0/1:309:158,151:158:5538:151:5412:-394.145,0,-395.596	1/1:175:1,174:1:36:174:6217:-555.345,-49.1317,0	1/1:177:2,175:2:68:175:6276:-558.391,-46.8914,0	0/1:20:9,11:9:316:11:396:-29.9621,0,-22.4035	0/1:215:108,107:108:3767:107:3836:-280.564,0,-268.53	1/1:197:0,197:0:0:197:7031:-632.523,-59.3029,0	0/1:392:201,191:201:7070:191:6788:-492.532,0,-507.2	1/1:115:0,115:0:0:115:4095:-367.923,-34.6185,0	0/1:54:26,28:26:920:28:1004:-74.4156,0,-64.7676	1/1:67:0,67:0:0:67:2368:-213.358,-20.169,0	0/1:127:45,82:45:1604:82:2923:-224.219,0,-103.435	1/1:49:0,49:0:0:49:1739:-156.771,-14.7505,0	0/1:81:33,48:33:1152:48:1702:-128.783,0,-77.3335	1/1:83:0,83:0:0:83:2976:-267.657,-24.9855,0	0/1:35:15,20:15:532:20:715:-54.0556,0,-37.0699	0/1:78:36,42:36:1280:42:1497:-111.538,0,-90.5951	0/1:52:33,19:33:1155:19:680:-45.4967,0,-86.2589	1/1:165:0,165:0:0:165:5905:-531.08,-49.67,0	1/1:117:0,117:0:0:117:4171:-375.329,-35.2205,0
chr10	441855	.	T	C	219658	PASS	AB=0.510575;ABP=11.8744;AC=136;AF=0.723404;AN=188;AO=10713;CIGAR=1X;DP=15193;DPB=15193;DPRA=0;EPP=23257.3;EPPR=9707.32;GTI=1;LEN=1;MEANALT=1.07447;MQM=58.4825;MQMR=43.9262;NS=94;NUMALT=1;ODDS=1.22061;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=383471;QR=159642;RO=4473;RPL=1;RPP=23257.3;RPPR=9707.32;RPR=10712;RUN=1;SAF=0;SAP=23266;SAR=10713;SRF=0;SRP=9716.01;SRR=4473;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:19,27:19:680:27:972:-73.8357,0,-44.6682	1/1:253:0,253:0:0:253:9056:-814.45,-76.1606,0	0/1:262:119,143:119:4238:143:5117:-381.594,0,-295.423	0/1:391:193,198:193:6887:198:7089:-519.664,0,-490.766	0/1:158:79,79:79:2798:79:2810:-205.488,0,-200.725	0/1:62:29,33:29:1040:33:1164:-86.3944,0,-73.9768	0/1:280:132,148:132:4706:148:5320:-394.372,0,-331.069	0/1:202:96,106:96:3425:106:3799:-280.925,0,-241.577	0/1:117:63,52:63:2264:52:1866:-132.797,0,-163.793	0/1:184:90,94:90:3217:94:3375:-248.379,0,-227.709	0/1:50:20,30:20:720:30:1076:-82.1014,0,-48.9116	0/1:65:30,35:30:1065:35:1256:-93.6885,0,-73.7129	1/1:64:0,63:0:0:63:2246:-201.912,-18.9649,0	1/1:54:0,54:0:0:54:1944:-175.191,-16.2556,0	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:55:0,55:0:0:55:1968:-177.237,-16.5567,0	0/1:70:34,36:34:1220:36:1292:-95.4886,0,-86.3941	0/1:66:30,36:30:1076:36:1273:-94.7879,0,-74.9005	0/1:42:17,25:17:612:25:885:-67.1399,0,-41.1962	0/1:530:258,272:258:9215:272:9720:-715.115,0,-649.65	0/1:259:106,153:106:3800:153:5462:-412.502,0,-257.762	0/1:246:175,71:175:6224:71:2552:-155.497,0,-464.615	0/1:156:76,80:76:2719:80:2849:-209.608,0,-192.19	0/1:162:86,76:86:3077:76:2732:-197.221,0,-223.265	0/1:176:78,98:78:2773:98:3500:-262.191,0,-193.315	1/1:491:0,491:0:0:491:17528:-1573.06,-147.806,0	1/1:251:1,250:1:36:250:8980:-803.497,-71.9603,0	0/1:40:13,27:13:468:27:972:-75.7071,0,-29.7459	0/1:522:278,244:278:9954:244:8767:-629.473,0,-706.327	1/1:231:0,231:0:0:231:8274:-744.071,-69.5379,0	1/1:295:1,294:1:36:294:10527:-942.058,-85.2553,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:33:14,19:14:504:19:659:-49.6744,0,-35.0188	1/1:3:0,3:0:0:3:108:-10.0031,-0.90309,0	1/1:11:0,11:0:0:11:396:-35.9375,-3.31133,0	1/1:20:0,20:0:0:20:712:-64.3977,-6.0206,0	1/1:208:0,208:0:0:208:7453:-669.389,-62.6142,0	0/1:362:190,171:190:6790:171:6136:-443.114,0,-489.802	1/1:52:0,52:0:0:52:1855:-167.139,-15.6536,0	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	0/1:483:192,291:192:6817:291:10439:-793.182,0,-458.901	0/1:47:21,26:21:752:26:932:-69.9916,0,-52.9624	0/1:315:181,134:181:6444:134:4807:-336.937,0,-474.576	0/1:63:33,30:33:1184:30:1076:-78.0795,0,-85.4699	1/1:72:0,72:0:0:72:2580:-232.348,-21.6742,0	1/1:197:0,197:0:0:197:7055:-633.936,-59.3029,0	1/1:242:0,242:0:0:242:8632:-776.471,-72.8493,0	0/1:335:173,162:173:6161:162:5801:-420.188,0,-441.758	1/1:246:0,246:0:0:246:8808:-792.58,-74.0534,0	0/1:223:110,113:110:3914:113:4035:-295.563,0,-277.774	1/1:302:0,302:0:0:302:10806:-970.946,-90.9111,0	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.22657	0/1:447:189,258:189:6750:258:9218:-694.746,0,-462.596	0/1:96:55,41:55:1965:41:1472:-103.467,0,-140.176	0/1:37:21,16:21:737:16:563:-39.8091,0,-54.6702	1/1:288:1,287:1:36:287:10238:-917.123,-83.1481,0	0/1:100:46,54:46:1652:54:1944:-145.088,0,-116.876	0/1:14:6,8:6:201:8:284:-21.1274,0,-13.6483	0/1:46:26,20:26:913:20:720:-51.2177,0,-66.4545	1/1:116:0,116:0:0:116:4168:-375.105,-34.9195,0	0/1:110:59,51:59:2124:51:1824:-131.328,0,-153.915	1/1:15:0,15:0:0:15:540:-48.8417,-4.51545,0	0/1:295:156,138:156:5574:138:4937:-354.548,0,-392.788	1/1:348:3,345:3:108:345:12354:-1100.26,-94.8226,0	1/1:88:0,88:0:0:88:3145:-283.113,-26.4906,0	1/1:143:0,143:0:0:143:5134:-462.077,-43.0473,0	0/1:357:155,201:155:5542:201:7182:-537.506,0,-380.133	1/1:219:2,216:2:72:216:7753:-690.584,-59.2405,0	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.1591	1/1:124:1,123:1:36:123:4396:-392.038,-33.7294,0	1/1:71:0,71:0:0:71:2552:-229.426,-21.3731,0	1/1:35:0,35:0:0:35:1256:-113.281,-10.5361,0	0/1:263:124,139:124:4396:139:4981:-368.674,0,-309.216	1/1:84:0,84:0:0:84:3011:-270.574,-25.2865,0	1/1:238:0,238:0:0:238:8534:-767.618,-71.6451,0	0/1:318:160,158:160:5733:158:5684:-415.897,0,-408.707	1/1:184:1,183:1:36:183:6542:-584.561,-51.841,0	1/1:182:2,180:2:72:180:6452:-573.841,-48.0453,0	0/1:19:8,11:8:284:11:392:-29.9005,0,-19.8472	0/1:220:114,106:114:4066:106:3812:-277.004,0,-292.47	1/1:199:0,199:0:0:199:7108:-639.482,-59.905,0	0/1:400:204,196:204:7267:196:6976:-506.976,0,-521.715	1/1:116:0,116:0:0:116:4164:-374.127,-34.9195,0	0/1:56:26,30:26:932:30:1065:-79.2975,0,-65.1681	1/1:68:0,68:0:0:68:2408:-216.956,-20.47,0	0/1:125:46,79:46:1637:79:2828:-216.902,0,-106.341	1/1:49:0,49:0:0:49:1760:-158.634,-14.7505,0	0/1:80:32,48:32:1152:48:1709:-129.872,0,-76.9182	1/1:84:0,84:0:0:84:2995:-269.366,-25.2865,0	0/1:35:15,20:15:540:20:712:-53.7573,0,-37.7403	0/1:78:36,42:36:1288:42:1512:-112.89,0,-91.2722	0/1:50:31,19:31:1101:19:684:-46.4494,0,-81.6559	1/1:163:0,163:0:0:163:5848:-526.153,-49.0679,0	1/1:119:0,119:0:0:119:4257:-383.071,-35.8226,0
chr10	532287	.	A	G	162789	PASS	AB=0.438479;ABP=238.132;AC=137;AF=0.728723;AN=188;AO=8041;CIGAR=1X;DP=12075;DPB=12075;DPRA=0;EPP=17463.8;EPPR=8730.16;GTI=4;LEN=1;MEANALT=1.08511;MQM=59.519;MQMR=59.3823;NS=94;NUMALT=1;ODDS=0.808868;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286924;QR=143421;RO=4023;RPL=0;RPP=17463.8;RPPR=8738.84;RPR=8041;RUN=1;SAF=8041;SAP=17463.8;SAR=0;SRF=4022;SRP=8730.16;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:154:76,78:76:2713:78:2724:-199.011,0,-198.007	1/1:98:0,98:0:0:98:3524:-317.165,-29.5009,0	0/1:232:114,118:114:4039:118:4221:-310.118,0,-293.653	0/1:300:178,122:178:6377:122:4349:-301.168,0,-483.122	0/1:195:114,81:114:4013:81:2878:-200.524,0,-302.457	0/1:87:58,29:58:2065:29:1041:-67.808,0,-159.718	0/1:160:97,63:97:3469:63:2230:-152.79,0,-264.255	0/1:205:142,63:142:5066:63:2245:-140.402,0,-394.13	0/1:201:86,115:86:3084:115:4102:-308.593,0,-217.248	0/1:107:77,30:77:2692:30:1076:-64.8508,0,-210.259	0/1:69:32,36:32:1148:36:1296:-96.1073,0,-82.7979	0/1:186:96,90:96:3425:90:3232:-235.062,0,-252.338	1/1:116:0,116:0:0:116:4141:-372.609,-34.9195,0	1/1:58:0,58:0:0:58:2073:-186.364,-17.4597,0	1/1:105:0,105:0:0:105:3753:-337.964,-31.6082,0	1/1:77:0,77:0:0:77:2745:-247.19,-23.1793,0	0/1:53:31,22:31:1108:22:784:-54.9238,0,-84.0664	0/1:53:26,27:26:936:27:964:-71.1081,0,-68.5967	0/1:38:14,24:14:504:24:860:-66.2526,0,-33.9793	0/1:295:199,96:199:7111:96:3433:-220.37,0,-551.097	0/1:302:172,130:172:6122:130:4617:-324.719,0,-457.983	0/1:140:96,44:96:3407:44:1539:-96.6489,0,-264.673	0/1:146:87,59:87:3068:59:2090:-144.407,0,-232.289	0/1:117:69,48:69:2453:48:1716:-119.488,0,-185.551	0/1:177:104,73:104:3713:73:2628:-183.357,0,-280.111	1/1:209:2,207:2:72:207:7379:-657.274,-56.0785,0	1/1:357:2,355:2:68:355:12674:-1133.66,-101.01,0	0/1:46:28,18:28:1008:18:648:-44.7998,0,-77.1535	0/1:326:189,137:189:6732:137:4901:-343.025,0,-507.725	1/1:185:0,185:0:0:185:6626:-596.278,-55.6906,0	1/1:148:0,148:0:0:148:5245:-472.116,-44.5524,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:29:14,15:14:489:15:536:-39.816,0,-35.2297	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:271:0,271:0:0:271:9697:-872.661,-81.5791,0	0/1:93:48,44:48:1713:44:1561:-112.32,0,-126.293	1/1:44:0,44:0:0:44:1576:-141.909,-13.2453,0	0/1:10:3,7:3:93:7:252:-20.0187,0,-5.66643	0/1:211:118,89:118:4191:89:3181:-223.465,0,-314.208	0/1:54:30,24:30:1080:24:864:-61.7085,0,-81.2576	0/1:302:165,137:165:5845:137:4877:-347.256,0,-434.414	0/1:90:60,30:60:2156:30:1076:-70.0531,0,-167.212	1/1:90:0,90:0:0:90:3206:-288.753,-27.0927,0	1/1:186:1,185:1:36:185:6601:-590.493,-52.3933,0	1/1:165:0,165:0:0:165:5920:-532.532,-49.67,0	0/1:185:92,93:92:3277:93:3321:-243.399,0,-239.334	1/1:110:1,109:1:36:109:3897:-347.187,-29.515,0	0/1:82:53,29:53:1889:29:1021:-67.5149,0,-145.584	1/1:104:0,104:0:0:104:3698:-333.018,-31.3071,0	0/1:7:5,2:5:180:2:57:-3.3061,0,-14.4425	0/1:163:102,61:102:3637:61:2188:-148.096,0,-278.462	0/1:94:58,36:58:2065:36:1281:-87.2347,0,-157.752	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:191:0,191:0:0:191:6761:-608.341,-57.4967,0	0/1:95:55,40:55:1957:40:1428:-100.213,0,-147.773	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:12:5,7:5:180:7:244:-18.6871,0,-12.9397	1/1:113:0,113:0:0:113:4047:-364.267,-34.0164,0	0/1:125:70,54:70:2516:54:1936:-136.858,0,-189.039	1/1:14:0,14:0:0:14:504:-45.6957,-4.21442,0	0/1:188:113,74:113:4011:74:2575:-175.384,0,-304.62	1/1:210:0,210:0:0:210:7517:-676.51,-63.2163,0	1/1:81:0,81:0:0:81:2904:-261.504,-24.3834,0	1/1:117:1,115:1:36:115:4102:-365.733,-31.6061,0	0/1:251:103,148:103:3678:148:5282:-399.948,0,-255.624	1/1:128:2,126:2:72:126:4473:-395.751,-31.6951,0	0/1:41:23,18:23:798:18:644:-45.9375,0,-59.735	1/1:108:0,108:0:0:108:3884:-349.675,-32.5112,0	1/1:61:0,61:0:0:61:2193:-197.632,-18.3628,0	1/1:29:0,29:0:0:29:1044:-94.2697,-8.72987,0	0/1:256:147,109:147:5284:109:3861:-270.541,0,-398.495	1/1:124:0,124:0:0:124:4418:-397.782,-37.3277,0	1/1:208:1,207:1:36:207:7419:-663.738,-59.0474,0	1/1:157:0,157:0:0:157:5618:-505.683,-47.2617,0	1/1:127:0,127:0:0:127:4506:-405.405,-38.2308,0	1/1:92:2,89:2:72:89:3158:-277.579,-20.9168,0	0/1:13:4,9:4:144:9:305:-23.8556,0,-9.40023	0/1:167:93,74:93:3321:74:2656:-188.9,0,-248.622	1/1:137:0,137:0:0:137:4863:-437.619,-41.2411,0	0/1:393:187,206:187:6712:206:7377:-545.332,0,-485.082	1/1:88:0,88:0:0:88:3149:-283.589,-26.4906,0	0/1:143:73,70:73:2613:70:2512:-183.282,0,-192.362	1/1:69:1,68:1:36:68:2440:-216.25,-17.1728,0	0/1:153:69,84:69:2461:84:2988:-223.085,0,-175.635	1/1:23:0,23:0:0:23:824:-74.4588,-6.92369,0	0/1:100:53,47:53:1904:47:1683:-121.637,0,-141.316	1/1:120:0,120:0:0:120:4304:-387.503,-36.1236,0	0/1:67:28,39:28:1004:39:1404:-106.488,0,-70.3908	0/1:134:75,59:75:2696:59:2120:-150.669,0,-200.963	0/1:98:73,25:73:2609:25:896:-51.4547,0,-205.541	1/1:234:0,233:0:0:233:8298:-745.711,-70.14,0	1/1:136:2,134:2:57:134:4751:-422.302,-35.5268,0
chr10	532353	.	A	T,C	256128	PASS	AB=0.454783,0.544928;ABP=125.549,123.983;AC=135,53;AF=0.718085,0.281915;AN=188;AO=8376,3772;CIGAR=1X,1X;DP=12151;DPB=12151;DPRA=65.3172,1.05904;EPP=18087.2,8115.82;EPPR=9.52472;GTI=2;LEN=1,1;MEANALT=1.6129,1.98276;MQM=59.3842,59.1392;MQMR=60;NS=94;NUMALT=2;ODDS=0.994352;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=294758,134809;QR=108;RO=3;RPL=8365,3763;RPP=18095.8,8115.82;RPPR=9.52472;RPR=11,9;RUN=1,1;SAF=1,0;SAP=18182.6,8193.8;SAR=8375,3772;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:0,20,34:0:0:20,34:712,1215:-157.407,-99.3849,-93.3643,-58.3779,0,-48.1428	1/1:156:0,156,0:0:0:156,0:5532,0:-497.844,-46.9607,0,-497.844,-46.9607,-497.844	1/2:144:0,69,75:0:0:69,75:2456,2678:-418.404,-218.273,-197.501,-200.487,0,-177.91	1/2:278:0,150,128:0:0:150,128:5310,4575:-805.744,-373.311,-328.156,-432.789,0,-394.257	1/2:101:0,59,42:0:0:59,42:2058,1508:-290.417,-123.315,-105.554,-167.457,0,-154.814	1/2:64:0,25,39:0:0:25,39:896,1396:-187.196,-114.127,-106.602,-73.4264,0,-61.6863	1/2:177:0,80,97:0:0:80,97:2848,3468:-514.641,-282.719,-258.637,-232.278,0,-203.078	1/2:217:0,76,141:0:0:76,141:2688,5024:-627.113,-408.406,-385.528,-219.06,0,-176.615	1/2:157:1,38,118:1:36:38,118:1347,4220:-450.336,-341.012,-332.51,-106.682,0,-74.0983	1/2:187:0,64,123:0:0:64,123:2264,4411:-544.332,-359.937,-340.671,-184.749,0,-147.723	1/2:74:0,32,42:0:0:32,42:1124,1500:-213.966,-122.511,-112.878,-91.8092,0,-79.1659	1/2:94:0,40,54:0:0:40,54:1404,1920:-270.969,-156.714,-144.673,-114.608,0,-98.3522	1/1:78:0,78,0:0:0:78,0:2695,0:-242.69,-23.4803,0,-242.69,-23.4803,-242.69	1/1:89:0,89,0:0:0:89,0:3136,0:-282.134,-26.7917,0,-282.134,-26.7917,-282.134	1/1:52:0,52,0:0:0:52,0:1826,0:-164.546,-15.6536,0,-164.546,-15.6536,-164.546	1/1:79:0,78,1:0:0:78,1:2720,36:-244.507,-23.4803,0,-241.569,-20.1831,-241.268	1/2:117:0,53,64:0:0:53,64:1845,2277:-335.768,-185.757,-169.803,-150.362,0,-131.097	1/2:81:0,37,44:0:0:37,44:1312,1584:-236.329,-129.456,-118.318,-107.229,0,-93.9835	1/2:52:0,31,21:0:0:31,21:1077,756:-149.524,-61.9738,-52.6419,-87.9043,0,-81.5827	1/2:245:0,127,118:0:0:127,118:4458,4214:-706.442,-343.643,-305.412,-363.153,0,-327.631	1/2:233:0,113,120:0:0:113,120:3979,4277:-672.789,-348.927,-314.91,-324.216,0,-288.093	1/2:149:0,58,91:0:0:58,91:2072,3239:-433.033,-264.152,-246.693,-169.237,0,-141.843	1/2:142:0,61,81:0:0:61,81:2125,2879:-407.516,-234.833,-216.471,-173.033,0,-148.65	1/2:132:0,50,82:0:0:50,82:1776,2921:-382.98,-238.311,-223.259,-145.025,0,-120.34	1/2:92:0,48,44:0:0:48,44:1693,1554:-263.977,-126.163,-111.714,-138.166,0,-124.921	1/1:466:1,465,0:1:36:465,0:16376,0:-1468.28,-136.682,0,-1468.58,-139.979,-1471.52	1/1:355:0,355,0:0:0:355,0:12417,0:-1116.95,-106.866,0,-1116.95,-106.866,-1116.95	1/2:43:0,17,26:0:0:17,26:604,934:-125.671,-76.4756,-71.3581,-49.5517,0,-41.725	1/2:351:0,180,171:0:0:180,171:6372,6131:-1019.08,-500.315,-446.13,-519.12,0,-467.644	1/1:103:0,103,0:0:0:103,0:3587,0:-323.03,-31.0061,0,-323.03,-31.0061,-323.03	1/1:155:0,155,0:0:0:155,0:5497,0:-494.837,-46.6597,0,-494.837,-46.6597,-494.837	1/1:9:0,9,0:0:0:9,0:320,0:-28.7008,-2.70927,0,-28.7008,-2.70927,-28.7008	1/2:33:0,15,18:0:0:15,18:528,639:-95.3954,-52.416,-47.9005,-43.3326,0,-37.914	1/1:25:0,25,0:0:0:25,0:861,0:-77.8002,-7.52575,0,-77.8002,-7.52575,-77.8002	1/1:16:0,16,0:0:0:16,0:572,0:-51.8052,-4.81648,0,-51.8052,-4.81648,-51.8052	1/1:16:0,16,0:0:0:16,0:564,0:-51.0903,-4.81648,0,-51.0903,-4.81648,-51.0903	1/1:174:0,174,0:0:0:174,0:6171,0:-555.445,-52.3792,0,-555.445,-52.3792,-555.445	1/2:244:0,115,129:0:0:115,129:4000,4619:-701.426,-376.249,-341.63,-325.529,0,-286.697	1/1:73:0,73,0:0:0:73,0:2525,0:-227.452,-21.9752,0,-227.452,-21.9752,-227.452	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:190:0,106,84:0:0:106,84:3744,2990:-548.563,-243.96,-212.051,-304.957,0,-279.67	1/2:31:0,18,13:0:0:18,13:636,468:-90.3281,-38.5463,-33.1277,-52.1388,0,-48.2254	1/2:198:0,63,135:0:0:63,135:2204,4841:-574.244,-394.989,-376.025,-179.607,0,-138.968	1/2:98:1,45,52:1:36:45,52:1568,1854:-275.169,-148.156,-137.547,-124.369,0,-111.653	1/1:69:0,69,0:0:0:69,0:2414,0:-217.292,-20.7711,0,-217.292,-20.7711,-217.292	1/1:116:0,116,0:0:0:116,0:4078,0:-366.767,-34.9195,0,-366.767,-34.9195,-366.767	1/1:226:0,226,0:0:0:226,0:7816,0:-703.189,-68.0328,0,-703.189,-68.0328,-703.189	1/2:269:0,124,145:0:0:124,145:4334,5199:-775.792,-423.588,-386.26,-352.557,0,-308.907	1/1:124:0,124,0:0:0:124,0:4380,0:-393.842,-37.3277,0,-393.842,-37.3277,-393.842	1/2:258:0,119,139:0:0:119,139:4244,4975:-751.825,-405.925,-370.102,-346.257,0,-304.414	1/1:207:0,205,2:0:0:205,2:7270,72:-653.79,-61.7112,0,-647.915,-55.4765,-647.313	1/2:18:0,7,11:0:0:7,11:244,396:-52.3237,-32.484,-30.3768,-20.1919,0,-16.8805	1/2:111:0,50,61:0:0:50,61:1764,2188:-322.3,-178.68,-163.628,-143.976,0,-125.613	1/2:44:0,14,30:0:0:14,30:500,1080:-129.189,-88.4255,-84.2111,-41.1218,0,-32.0909	1/2:19:0,7,12:0:0:7,12:248,419:-54.5976,-34.3927,-32.2855,-20.557,0,-16.9446	1/1:232:0,232,0:0:0:232,0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chr10	544103	.	CGAG	TGAT,CGAT	193234	PASS	AB=0.481266,0.514526;ABP=18.2245,12.1578;AC=137,51;AF=0.728723,0.271277;AN=188;AO=6598,2582;CIGAR=1X2M1X,3M1X;DP=9208;DPB=9208;DPRA=0,1.23322;EPP=14330.4,5609.75;EPPR=0;GTI=0;LEN=4,1;MEANALT=1.91489,2.35;MQM=59.6244,59.9706;MQMR=0;NS=94;NUMALT=2;ODDS=1.76996;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=232272,92307;QR=0;RO=0;RPL=0,0;RPP=14330.4,5609.75;RPPR=0;RPR=6598,2582;RUN=1,1;SAF=0,0;SAP=14330.4,5609.75;SAR=6598,2582;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,18,26:0:0:18,26:623,932:-126.996,-76.3721,-70.9535,-50.9747,0,-43.1479	1/1:116:0,114,1:0:0:114,1:4017,36:-361.333,-34.3174,0,-358.396,-31.3624,-358.095	1/2:140:0,75,65:0:0:75,65:2670,2306:-405.831,-188.223,-165.645,-217.964,0,-198.397	1/2:216:0,89,126:0:0:89,126:3134,4488:-620.937,-365.8,-339.008,-255.131,0,-217.201	1/2:46:0,24,22:0:0:24,22:851,784:-133.582,-64.2613,-57.0365,-69.6765,0,-63.0538	1/2:48:0,25,23:0:0:25,23:862,824:-137.549,-67.5481,-60.0223,-70.3526,0,-63.4289	1/2:176:0,86,90:0:0:86,90:3026,3225:-509.693,-263.374,-237.485,-246.674,0,-219.581	1/2:163:0,89,74:0:0:89,74:3138,2648:-471.235,-216.29,-189.499,-255.3,0,-233.023	1/2:104:0,52,52:0:0:52,52:1810,1860:-299.169,-152.026,-136.372,-147.496,0,-131.843	1/2:111:0,65,44:0:0:65,44:2283,1575:-314.355,-128.546,-108.979,-185.913,0,-172.668	1/2:37:0,23,14:0:0:23,14:815,500:-107.512,-41.1218,-34.1981,-66.7461,0,-62.5316	1/2:70:0,33,36:0:0:33,36:1167,1296:-200.844,-105.805,-95.8713,-95.093,0,-84.2559	1/1:65:0,65,0:0:0:65,0:2296,0:-206.894,-19.567,0,-206.894,-19.567,-206.894	1/1:56:0,56,0:0:0:56,0:1965,0:-177.121,-16.8577,0,-177.121,-16.8577,-177.121	1/1:62:0,62,0:0:0:62,0:2182,0:-196.633,-18.6639,0,-196.633,-18.6639,-196.633	1/1:58:0,58,0:0:0:58,0:2039,0:-183.748,-17.4597,0,-183.748,-17.4597,-183.748	1/2:68:0,27,41:0:0:27,41:950,1476:-198.123,-120.794,-112.666,-77.6844,0,-65.3421	1/2:67:0,38,29:0:0:38,29:1363,1040:-196.332,-85.1845,-73.7454,-111.506,0,-102.776	1/2:27:0,12,15:0:0:12,15:431,540:-79.5735,-44.4211,-40.8087,-35.5118,0,-30.9963	1/2:176:0,115,59:0:0:115,59:4075,2116:-504.555,-172.617,-137.999,-331.964,0,-314.203	1/2:190:0,80,107:0:0:80,107:2812,3828:-541.02,-312.147,-288.065,-228.867,0,-196.657	1/2:88:0,24,63:0:0:24,63:846,2261:-253.38,-184.506,-177.281,-68.9448,0,-49.98	1/2:71:0,35,36:0:0:35,36:1225,1276:-203.964,-104.306,-93.7699,-100.01,0,-89.1727	1/2:140:0,62,78:0:0:62,78:2167,2755:-400.977,-224.709,-206.045,-176.619,0,-153.139	1/2:60:0,31,29:0:0:31,29:1101,1032:-174.155,-84.463,-75.1311,-90.0469,0,-81.317	1/1:302:0,302,0:0:0:302,0:10657,0:-959.032,-90.9111,0,-959.032,-90.9111,-959.032	1/1:200:0,198,2:0:0:198,2:6989,72:-628.629,-59.6039,0,-622.755,-53.3693,-622.153	1/2:47:0,21,22:0:0:21,22:734,784:-123.483,-63.902,-57.5804,-59.5756,0,-52.953	1/2:237:0,81,155:0:0:81,155:2852,5543:-684.198,-452.065,-427.681,-232.216,0,-185.557	1/1:135:0,135,0:0:0:135,0:4762,0:-428.572,-40.6391,0,-428.572,-40.6391,-428.572	1/1:155:0,155,0:0:0:155,0:5417,0:-487.609,-46.6597,0,-487.609,-46.6597,-487.609	1/1:4:0,4,0:0:0:4,0:139,0:-12.8524,-1.20412,0,-12.8524,-1.20412,-12.8524	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:4:0,4,0:0:0:4,0:141,0:-13.0369,-1.20412,0,-13.0369,-1.20412,-13.0369	1/1:4:0,4,0:0:0:4,0:135,0:-12.4731,-1.20412,0,-12.4731,-1.20412,-12.4731	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:201:0,201,0:0:0:201,0:7059,0:-635.366,-60.507,0,-635.366,-60.507,-635.366	1/2:206:0,88,118:0:0:88,118:3094,4208:-595.215,-343.381,-316.89,-252.187,0,-216.666	1/1:40:0,40,0:0:0:40,0:1388,0:-125.141,-12.0412,0,-125.141,-12.0412,-125.141	1/2:4:0,2,2:0:0:2,2:71,72:-12.0173,-6.23466,-5.6326,-6.14,0,-5.53794	1/2:123:0,67,55:0:0:67,55:2365,1968:-353.107,-160.553,-140.384,-192.629,0,-176.072	1/2:38:0,22,16:0:0:22,16:779,576:-110.81,-47.3585,-40.7358,-63.8085,0,-58.992	1/2:162:0,63,99:0:0:63,99:2184,3540:-466.507,-289.007,-270.042,-177.851,0,-148.049	1/2:77:0,43,33:0:0:43,33:1511,1180:-219.258,-96.3598,-83.4155,-123.037,0,-113.103	1/1:59:0,59,0:0:0:59,0:2056,0:-185.295,-17.7608,0,-185.295,-17.7608,-185.295	1/1:128:0,127,0:0:0:127,0:4461,0:-400.195,-38.2308,0,-400.195,-38.2308,-400.195	1/1:165:0,165,0:0:0:165,0:5839,0:-525.528,-49.67,0,-525.528,-49.67,-525.528	1/2:190:0,83,105:0:0:83,105:2906,3760:-543.132,-306.699,-281.713,-236.494,0,-204.886	1/1:127:0,127,0:0:0:127,0:4457,0:-401.298,-38.2308,0,-401.298,-38.2308,-401.298	1/2:155:0,61,94:0:0:61,94:2156,3356:-449.546,-273.961,-255.598,-175.94,0,-147.643	1/1:209:0,209,0:0:0:209,0:7308,0:-657.781,-62.9153,0,-657.781,-62.9153,-657.781	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/2:150:0,71,79:0:0:71,79:2523,2824:-436.166,-230.618,-209.245,-205.905,0,-182.123	1/2:28:0,13,15:0:0:13,15:465,536:-81.9769,-44.0594,-40.146,-38.2749,0,-33.7595	1/2:9:0,4,5:0:0:4,5:143,180:-26.7058,-15.0469,-13.8428,-12.0173,0,-10.5122	1/1:136:0,135,1:0:0:135,1:4692,36:-421.507,-40.6391,0,-418.569,-37.3418,-418.268	1/2:30:0,18,12:0:0:18,12:642,4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chr10	562744	.	G	A	223208	PASS	AB=0.510003;ABP=9.17902;AC=135;AF=0.725806;AN=186;AO=9715;CIGAR=1X;DP=13215;DPB=13215;DPRA=0;EPP=15523.8;EPPR=4986.71;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.1186;MQMR=59.8279;NS=93;NUMALT=1;ODDS=19.763;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=346763;QR=124697;RO=3497;RPL=9024;RPP=15523.8;RPPR=4986.71;RPR=691;RUN=1;SAF=0;SAP=21098.9;SAR=9715;SRF=0;SRP=7596.65;SRR=3497;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:14,18:14:504:18:642:-48.4596,0,-36.0605	1/1:51:0,51:0:0:51:1816:-163.626,-15.3525,0	0/1:93:55,38:55:1972:38:1364:-95.0362,0,-149.754	0/1:132:76,56:76:2711:56:2001:-140.582,0,-204.475	0/1:35:16,19:16:555:19:684:-51.3289,0,-39.74	0/1:13:7,6:7:244:6:216:-15.8771,0,-18.3788	0/1:60:25,35:25:891:35:1252:-94.9062,0,-62.439	0/1:52:24,28:24:860:28:1004:-75.0123,0,-62.0683	0/1:55:31,24:31:1116:24:864:-61.5213,0,-84.195	0/1:36:12,24:12:419:24:851:-66.0724,0,-27.2056	0/1:295:156,139:156:5580:139:4979:-359.394,0,-413.504	0/1:75:41,34:41:1467:34:1220:-87.4996,0,-109.748	1/1:78:0,78:0:0:78:2800:-252.017,-23.4803,0	1/1:65:0,65:0:0:65:2336:-210.467,-19.567,0	1/1:89:0,89:0:0:89:3192:-287.233,-26.7917,0	1/1:43:0,43:0:0:43:1544:-139.229,-12.9443,0	0/1:31:17,14:17:608:14:500:-35.9766,0,-45.7201	0/1:29:16,13:16:572:13:464:-33.3592,0,-43.0836	0/1:157:75,82:75:2688:82:2948:-218.252,0,-194.894	0/1:134:66,68:66:2360:68:2420:-177.544,0,-172.31	0/1:84:47,37:47:1680:37:1316:-93.3903,0,-126.201	0/1:82:47,35:47:1671:35:1260:-88.9537,0,-125.984	0/1:142:65,77:65:2323:77:2736:-203.686,0,-166.579	0/1:41:21,20:21:752:20:716:-52.3507,0,-55.664	0/1:58:21,37:21:752:37:1305:-100.273,0,-50.5465	1/1:140:0,140:0:0:140:4983:-448.491,-42.1442,0	1/1:121:1,120:1:36:120:4285:-381.882,-32.8264,0	0/1:19:8,11:8:284:11:396:-30.2585,0,-20.1838	0/1:149:68,80:68:2431:80:2880:-213.829,0,-174.132	1/1:85:0,85:0:0:85:3011:-270.981,-25.5876,0	1/1:115:0,115:0:0:115:4048:-364.164,-34.6185,0	1/1:372:0,372:0:0:372:13259:-1192.72,-111.983,0	1/1:360:13,347:13:464:347:12396:-1072.13,-66.2733,0	1/1:323:0,323:0:0:323:11533:-1036.85,-97.2327,0	1/1:832:0,832:0:0:832:29587:-2659.87,-250.457,0	1/1:628:1,627:1:36:627:22332:-2003.57,-185.449,0	1/1:205:0,205:0:0:205:7360:-662.273,-61.7112,0	0/1:37:19,18:19:671:18:636:-46.3296,0,-49.5777	1/1:211:0,211:0:0:211:7560:-680.316,-63.5173,0	0/1:179:92,87:92:3287:87:3118:-226.486,0,-242.165	0/1:56:28,28:28:988:28:1000:-73.417,0,-72.3758	0/1:124:65,59:65:2324:59:2120:-153.66,0,-172.092	0/1:49:31,18:31:1100:18:629:-42.1429,0,-84.5598	0/1:59:27,32:27:964:32:1152:-86.0215,0,-69.3057	1/1:48:0,48:0:0:48:1701:-153.333,-14.4494,0	1/1:105:0,105:0:0:105:3741:-335.801,-31.6082,0	1/1:86:0,86:0:0:86:3054:-274.97,-25.8886,0	0/1:71:33,38:33:1173:38:1337:-99.1193,0,-84.4955	1/1:62:1,61:1:32:61:2174:-192.615,-15.4645,0	0/1:65:30,35:30:1067:35:1233:-91.673,0,-76.7697	1/1:94:0,94:0:0:94:3353:-301.856,-28.2968,0	0/1:550:242,308:242:8618:308:10960:-820.412,0,-610.054	0/1:90:35,55:35:1256:55:1954:-148.749,0,-86.2526	0/1:48:32,16:32:1148:16:568:-37.0024,0,-89.1804	0/1:299:137,162:137:4877:162:5803:-432.135,0,-349.012	1/1:101:0,101:0:0:101:3601:-324.208,-30.404,0	0/1:39:18,21:18:648:21:756:-56.6141,0,-46.9094	0/1:524:251,272:251:8926:272:9652:-710.012,0,-645.522	0/1:342:155,187:155:5518:187:6704:-500.309,0,-393.782	1/1:60:0,60:0:0:60:2153:-193.959,-18.0618,0	0/1:94:47,47:47:1659:47:1676:-122.751,0,-121.267	1/1:349:1,348:1:36:348:12364:-1108.39,-101.461,0	0/1:64:36,28:36:1255:28:996:-70.6808,0,-93.9107	1/1:103:0,103:0:0:103:3704:-333.208,-31.0061,0	1/1:60:1,59:1:36:59:2112:-186.73,-14.4635,0	1/1:52:0,52:0:0:52:1841:-165.963,-15.6536,0	0/1:116:56,60:56:1973:60:2148:-158.618,0,-142.924	1/1:97:0,97:0:0:97:3472:-312.666,-29.1999,0	0/1:445:241,203:241:8614:203:7272:-520.369,0,-640.969	1/1:41:0,41:0:0:41:1464:-131.866,-12.3422,0	1/1:51:0,51:0:0:51:1832:-165.115,-15.3525,0	1/1:388:1,387:1:36:387:13803:-1237.16,-113.201,0	0/1:75:32,43:32:1139:43:1544:-116.498,0,-80.2411	1/1:73:1,72:1:36:72:2567:-227.634,-18.3769,0	1/1:108:0,108:0:0:108:3856:-346.885,-32.5112,0	1/1:103:0,103:0:0:103:3673:-330.7,-31.0061,0	1/1:64:0,64:0:0:64:2292:-206.423,-19.2659,0	1/1:63:2,61:2:72:61:2192:-190.655,-12.1282,0	0/1:501:243,258:243:8667:258:9190:-675.339,0,-629.203	0/1:54:25,29:25:896:29:1025:-76.2984,0,-64.7047	1/1:37:0,37:0:0:37:1323:-119.327,-11.1381,0	0/1:126:58,68:58:2080:68:2427:-180.71,0,-149.54	1/1:51:0,51:0:0:51:1832:-165.155,-15.3525,0	0/1:72:39,33:39:1392:33:1188:-85.5483,0,-103.891	1/1:44:0,44:0:0:44:1567:-141.301,-13.2453,0	0/1:130:54,76:54:1915:76:2732:-206.54,0,-133.443	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:55:35,20:35:1252:20:720:-48.5574,0,-96.4269	.:.:.:.:.:.:.:.	0/1:392:191,201:191:6821:201:7212:-530.998,0,-495.957	0/1:547:256,291:256:9146:291:10456:-775.678,0,-658.435	0/1:91:59,32:59:2099:32:1144:-75.5889,0,-161.653	1/1:41:0,41:0:0:41:1444:-130.222,-12.3422,0	1/1:101:0,101:0:0:101:3632:-326.925,-30.404,0
chr10	620764	.	A	T	158165	PASS	AB=0.509717;ABP=7.60992;AC=134;AF=0.712766;AN=188;AO=7373;CIGAR=1X;DP=10145;DPB=10145;DPRA=24.4831;EPP=14837.1;EPPR=5538.91;GTI=1;LEN=1;MEANALT=1.06522;MQM=58.9339;MQMR=59.7758;NS=94;NUMALT=1;ODDS=0.0529405;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263416;QR=98103;RO=2765;RPL=138;RPP=14837.1;RPPR=5538.91;RPR=7235;RUN=1;SAF=7373;SAP=16013.3;SAR=0;SRF=2765;SRP=6007.13;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:13,30:13:452:30:1072:-83.5319,0,-28.0659	1/1:240:0,239:0:0:239:8556:-768.207,-71.9462,0	0/1:167:90,77:90:3216:77:2749:-196.053,0,-239.382	0/1:278:122,155:122:4334:155:5519:-411.925,0,-306.474	0/1:96:38,58:38:1337:58:2072:-157.736,0,-91.729	0/1:60:33,27:33:1172:27:964:-68.3641,0,-87.655	0/1:153:74,79:74:2637:79:2824:-207.967,0,-191.518	0/1:170:91,79:91:3228:79:2810:-201.183,0,-238.793	0/1:70:21,49:21:744:49:1732:-134.808,0,-46.2118	0/1:113:45,68:45:1604:68:2436:-185.413,0,-110.634	0/1:67:26,41:26:924:41:1452:-110.635,0,-63.2223	0/1:67:35,32:35:1248:32:1140:-82.5269,0,-92.3696	1/1:61:0,61:0:0:61:2159:-194.491,-18.3628,0	1/1:92:0,92:0:0:92:3304:-296.19,-27.6948,0	1/1:40:0,40:0:0:40:1440:-129.888,-12.0412,0	1/1:61:0,61:0:0:61:2180:-196.317,-18.3628,0	0/1:57:25,32:25:880:32:1125:-84.1358,0,-62.1662	0/1:59:27,32:27:964:32:1148:-85.5906,0,-69.3161	0/1:32:16,16:16:568:16:576:-42.542,0,-41.8189	0/1:272:123,149:123:4343:149:5334:-397.976,0,-309.137	0/1:143:67,76:67:2353:76:2711:-201.134,0,-168.982	0/1:159:111,48:111:3964:48:1720:-107.07,0,-308.961	0/1:90:50,40:50:1746:40:1436:-102.438,0,-130.324	0/1:80:44,36:44:1564:36:1296:-92.766,0,-116.267	0/1:73:40,33:40:1402:33:1180:-84.4751,0,-103.233	1/1:349:1,348:1:36:348:12422:-1113.16,-101.461,0	1/1:221:0,221:0:0:221:7893:-710.009,-66.5276,0	0/1:33:20,13:20:716:13:468:-32.5257,0,-54.8337	0/1:318:127,190:127:4490:190:6783:-514.332,0,-308.593	1/1:169:0,169:0:0:169:6035:-541.869,-50.8741,0	1/1:105:1,104:1:21:104:3717:-331.749,-29.5082,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.0483	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:140:-12.2425,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5035,-2.70927,0	1/1:141:0,141:0:0:141:5055:-454.309,-42.4452,0	0/1:239:129,110:129:4574:110:3918:-280.513,0,-339.777	1/1:54:0,54:0:0:54:1939:-174.696,-16.2556,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:206:95,110:95:3380:110:3925:-291.019,0,-242.347	0/1:28:17,11:17:604:11:396:-27.5493,0,-46.2618	0/1:160:96,64:96:3428:64:2291:-158.089,0,-260.567	0/1:53:23,30:23:820:30:1072:-80.8379,0,-58.1679	1/1:55:0,55:0:0:55:1951:-175.184,-16.5567,0	1/1:105:0,105:0:0:105:3762:-338.016,-31.6082,0	1/1:173:0,173:0:0:173:6176:-555.122,-52.0782,0	0/1:220:93,126:93:3278:126:4460:-333.708,0,-228.948	1/1:133:0,133:0:0:133:4728:-425.508,-40.037,0	0/1:145:72,73:72:2573:73:2601:-190.635,0,-188.168	1/1:253:1,252:1:36:252:9007:-804.829,-72.5623,0	0/1:6:2,4:2:68:4:140:-11.1384,0,-4.65153	0/1:242:131,111:131:4671:111:3956:-282.707,0,-347.7	0/1:77:29,48:29:1036:48:1710:-130.848,0,-70.3738	0/1:14:5,9:5:180:9:311:-24.1011,0,-12.3376	1/1:205:0,205:0:0:205:7343:-659.636,-61.7112,0	0/1:63:31,32:31:1104:32:1139:-83.8488,0,-80.3348	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:37:16,21:16:572:21:752:-56.8672,0,-40.6753	1/1:54:0,54:0:0:54:1928:-171.137,-16.2556,0	0/1:100:52,48:52:1860:48:1720:-124.977,0,-137.572	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:194:109,85:109:3862:85:3012:-212.655,0,-289.376	1/1:188:0,188:0:0:188:6720:-604.619,-56.5936,0	1/1:57:1,56:1:36:56:2008:-177.247,-13.5604,0	1/1:110:0,110:0:0:110:3921:-350.969,-33.1133,0	0/1:226:85,141:85:2937:141:5032:-384.911,0,-196.436	1/1:164:4,160:4:144:160:5715:-499.759,-36.0553,0	0/1:21:17,4:17:604:4:135:-6.16088,0,-48.369	1/1:119:0,119:0:0:119:4250:-382.063,-35.8226,0	1/1:84:0,82:0:0:82:2940:-264.317,-24.6845,0	1/1:39:0,39:0:0:39:1374:-123.912,-11.7402,0	0/1:164:71,93:71:2532:93:3321:-249.367,0,-177.047	1/1:62:0,62:0:0:62:2219:-199.87,-18.6639,0	1/1:151:0,151:0:0:151:5412:-487.018,-45.4555,0	1/1:207:0,207:0:0:207:7422:-667.273,-62.3132,0	1/1:111:0,111:0:0:111:3980:-358.119,-33.4143,0	1/1:92:1,91:1:36:91:3272:-290.786,-24.1055,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:150:83,67:83:2957:67:2412:-172.062,0,-220.047	1/1:121:0,121:0:0:121:4322:-388.414,-36.4246,0	0/1:229:119,110:119:4200:110:3935:-284.477,0,-309.15	1/1:88:0,88:0:0:88:3156:-284.222,-26.4906,0	0/1:61:29,32:29:1036:32:1144:-84.8972,0,-75.1911	1/1:66:0,66:0:0:66:2360:-211.117,-19.868,0	0/1:96:49,47:49:1740:47:1688:-123.292,0,-127.985	1/1:44:0,44:0:0:44:1579:-141.644,-13.2453,0	0/1:67:42,25:42:1484:25:892:-60.1183,0,-113.685	1/1:55:0,55:0:0:55:1968:-177.215,-16.5567,0	0/1:41:22,19:22:792:19:665:-47.8161,0,-59.2634	0/1:103:44,59:44:1572:59:2116:-159.475,0,-110.538	0/1:47:34,13:34:1216:13:468:-28.303,0,-95.5982	1/1:144:1,143:1:36:143:5102:-455.664,-39.75,0	1/1:90:0,90:0:0:90:3231:-290.834,-27.0927,0
chr10	629732	.	TG	CA,CG	131738	PASS	AB=0.534947,0.463238;ABP=38.0699,41.8071;AC=136,52;AF=0.723404,0.276596;AN=188;AO=4636,1534;CIGAR=2X,1X1M;DP=6177;DPB=6177;DPRA=0,0.928313;EPP=10070,3334.05;EPPR=0;GTI=1;LEN=2,1;MEANALT=1.65957,2.10909;MQM=59.6745,59.9022;MQMR=0;NS=94;NUMALT=2;ODDS=0.623761;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165119,54983;QR=0;RO=0;RPL=0,0;RPP=10070,3334.05;RPPR=0;RPR=4636,1534;RUN=1,1;SAF=4636,1534;SAP=10070,3334.05;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,15,9:0:0:15,9:540,324:-70.8578,-26.7966,-22.2811,-44.4211,0,-41.7118	1/1:54:0,54,0:0:0:54,0:1925,0:-173.518,-16.2556,0,-173.518,-16.2556,-173.518	1/2:106:0,57,49:0:0:57,49:2020,1752:-307.737,-143.214,-126.055,-164.879,0,-150.128	1/2:95:0,47,48:0:0:47,48:1670,1724:-277.074,-140.995,-126.847,-136.436,0,-121.986	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/2:21:0,11,10:0:0:11,10:396,360:-62.0389,-29.734,-26.4227,-32.6647,0,-29.6544	1/2:69:0,34,35:0:0:34,35:1205,1259:-201.229,-103.078,-92.8432,-98.5078,0,-87.9717	1/2:90:0,42,47:0:0:42,47:1508,1680:-260.14,-137.125,-124.481,-123.158,0,-109.01	1/2:58:0,35,23:0:0:35,23:1236,824:-168.201,-67.5596,-57.0236,-100.997,0,-94.0733	1/2:69:0,32,37:0:0:32,37:1137,1324:-200.96,-108.324,-98.6906,-92.9927,0,-81.8546	1/2:100:0,62,38:0:0:62,38:2167,1364:-287.799,-111.621,-92.9569,-176.534,0,-165.094	1/2:99:0,54,45:0:0:54,45:1923,1620:-289.257,-132.544,-116.288,-157.072,0,-143.525	1/1:54:0,54,0:0:0:54,0:1938,0:-174.693,-16.2556,0,-174.693,-16.2556,-174.693	1/1:102:0,102,0:0:0:102,0:3629,0:-326.792,-30.7051,0,-326.792,-30.7051,-326.792	1/1:49:0,49,0:0:0:49,0:1734,0:-156.308,-14.7505,0,-156.308,-14.7505,-156.308	1/1:52:0,51,1:0:0:51,1:1834,36:-164.976,-15.3525,0,-162.039,-12.0553,-161.738	1/2:50:0,38,12:0:0:38,12:1364,428:-146.508,-35.2464,-23.8073,-111.618,0,-108.006	1/2:30:0,16,14:0:0:16,14:574,504:-88.254,-41.4837,-36.6672,-47.1294,0,-42.915	1/2:33:0,16,17:0:0:16,17:570,608:-96.394,-49.9345,-45.118,-46.8163,0,-41.6988	1/2:80:0,36,44:0:0:36,44:1286,1580:-234.088,-129.246,-118.409,-105.2,0,-91.9545	1/2:63:0,38,25:0:0:38,25:1345,896:-182.983,-73.4346,-61.9955,-109.905,0,-102.379	1/2:62:0,21,41:0:0:21,41:754,1476:-182.297,-120.791,-114.47,-61.8652,0,-49.523	1/2:13:0,7,6:0:0:7,6:252,216:-38.5338,-17.9843,-15.8771,-20.9092,0,-19.103	1/2:33:0,23,10:0:0:23,10:807,360:-95.3516,-29.6887,-22.765,-66.0196,0,-63.0093	1/2:29:0,16,13:0:0:16,13:574,463:-84.9144,-38.0937,-33.2772,-47.1778,0,-43.2644	1/1:173:0,173,0:0:0:173,0:6150,0:-553.566,-52.0782,0,-553.566,-52.0782,-553.566	1/1:197:0,196,0:0:0:196,0:6994,0:-629.046,-59.0019,0,-629.046,-59.0019,-629.046	1/2:19:0,11,8:0:0:11,8:394,288:-55.9903,-23.8592,-20.5478,-32.4902,0,-30.0819	1/2:171:0,104,67:0:0:104,67:3726,2400:-499.922,-196.087,-164.78,-304.193,0,-284.024	1/1:113:0,112,1:0:0:112,1:3997,36:-359.54,-33.7154,0,-356.602,-30.4181,-356.301	1/1:31:0,31,0:0:0:31,0:1082,0:-97.6731,-9.33193,0,-97.6731,-9.33193,-97.6731	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:16:0,5,11:0:0:5,11:169,396:-46.3631,-32.6714,-31.1663,-14.0364,0,-10.725	1/1:8:0,8,0:0:0:8,0:288,0:-26.264,-2.40824,0,-26.264,-2.40824,-26.264	1/1:3:0,3,0:0:0:3,0:106,0:-9.8891,-0.90309,0,-9.8891,-0.90309,-9.8891	1/1:17:0,17,0:0:0:17,0:601,0:-54.4181,-5.11751,0,-54.4181,-5.11751,-54.4181	1/1:177:0,177,0:0:0:177,0:6331,0:-569.839,-53.2823,0,-569.839,-53.2823,-569.839	1/2:79:0,41,37:0:0:41,37:1464,1328:-227.671,-108.324,-95.9821,-119.345,0,-108.206	1/1:85:0,85,0:0:0:85,0:3056,0:-275.262,-25.5876,0,-275.262,-25.5876,-275.262	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/2:83:0,40,43:0:0:40,43:1427,1539:-242.181,-125.858,-113.817,-116.681,0,-103.736	1/2:38:0,22,16:0:0:22,16:788,576:-111.616,-47.3585,-40.7358,-64.6162,0,-59.7997	1/2:57:0,36,21:0:0:36,21:1294,752:-167.242,-61.6846,-50.8475,-105.916,0,-99.5945	1/2:36:0,16,20:0:0:16,20:568,716:-104.868,-58.7471,-53.9306,-46.4765,0,-40.4559	1/1:50:0,50,0:0:0:50,0:1779,0:-160.388,-15.0515,0,-160.388,-15.0515,-160.388	1/1:79:0,79,0:0:0:79,0:2813,0:-253.376,-23.7814,0,-253.376,-23.7814,-253.376	1/1:52:0,52,0:0:0:52,0:1858,0:-167.126,-15.6536,0,-167.126,-15.6536,-167.126	1/2:83:0,43,40:0:0:43,40:1516,1435:-240.836,-117.406,-104.461,-123.786,0,-111.745	1/1:58:0,58,0:0:0:58,0:2032,0:-183.129,-17.4597,0,-183.129,-17.4597,-183.129	1/2:87:0,39,48:0:0:39,48:1394,1720:-254.273,-140.618,-128.878,-114.012,0,-99.5628	1/1:106:0,106,0:0:0:106,0:3787,0:-340.923,-31.9092,0,-340.923,-31.9092,-340.923	1/2:8:0,6,2:0:0:6,2:216,72:-23.8592,-6.23466,-4.42848,-17.9843,0,-17.3823	1/2:207:0,100,107:0:0:100,107:3541,3825:-600.66,-312.235,-282.132,-288.78,0,-256.57	1/2:55:0,33,22:0:0:33,22:1188,792:-161.91,-64.983,-55.049,-97.2864,0,-90.6638	1/2:12:0,4,8:0:0:4,8:142,288:-35.4277,-23.8592,-22.655,-11.9251,0,-9.51685	1/1:95:0,95,0:0:0:95,0:3354,0:-302.003,-28.5979,0,-302.003,-28.5979,-302.003	1/2:16:0,5,11:0:0:5,11:169,392:-46.0013,-32.3087,-30.8036,-14.0362,0,-10.7249	1/2:6:0,2,4:0:0:2,4:72,144:-17.9843,-12.1095,-11.5074,-6.23466,0,-5.03054	1/2:21:0,12,8:0:0:12,8:432,288:-58.7669,-23.5167,-19.9043,-35.2674,0,-32.8592	1/1:64:0,64,0:0:0:64,0:2288,0:-206.099,-19.2659,0,-206.099,-19.2659,-206.099	1/2:97:0,63,34:0:0:63,34:2254,1204:-282.219,-98.4285,-79.4636,-184.146,0,-173.911	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:102:0,55,47:0:0:55,47:1955,1680:-296.592,-137.315,-120.759,-159.633,0,-145.484	1/1:95:0,95,0:0:0:95,0:3383,0:-304.665,-28.5979,0,-304.665,-28.5979,-304.665	1/1:75:0,75,0:0:0:75,0:2657,0:-239.347,-22.5773,0,-239.347,-22.5773,-239.347	1/1:32:0,31,1:0:0:31,1:1088,36:-97.8615,-9.33193,0,-94.9238,-6.03469,-94.6228	1/2:79:0,40,39:0:0:40,39:1436,1396:-231.294,-114.181,-102.139,-117.472,0,-105.732	1/1:125:0,125,0:0:0:125,0:4459,0:-401.285,-37.6288,0,-401.285,-37.6288,-401.285	1/2:70:0,42,28:0:0:42,28:1488,1000:-203.001,-81.7966,-69.1534,-121.56,0,-113.131	1/1:35:0,35,0:0:0:35,0:1256,0:-113.342,-10.5361,0,-113.342,-10.5361,-113.342	1/1:55:0,55,0:0:0:55,0:1952,0:-175.937,-16.5567,0,-175.937,-16.5567,-175.937	1/1:26:0,26,0:0:0:26,0:932,0:-84.1991,-7.82678,0,-84.1991,-7.82678,-84.1991	1/2:102:0,46,55:0:0:46,55:1638,1972:-294.319,-160.825,-146.977,-133.491,0,-116.935	1/1:70:0,70,0:0:0:70,0:2505,0:-225.694,-21.0721,0,-225.694,-21.0721,-225.694	1/1:87:0,87,0:0:0:87,0:3116,0:-280.634,-26.1896,0,-280.634,-26.1896,-280.634	1/1:168:0,168,0:0:0:168,0:5993,0:-539.325,-50.573,0,-539.325,-50.573,-539.325	1/1:53:0,53,0:0:0:53,0:1866,0:-168.206,-15.9546,0,-168.206,-15.9546,-168.206	1/1:55:0,55,0:0:0:55,0:1934,0:-174.329,-16.5567,0,-174.329,-16.5567,-174.329	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/2:89:0,47,42:0:0:47,42:1671,1512:-259.89,-123.73,-109.581,-136.518,0,-123.875	1/1:42:0,42,0:0:0:42,0:1469,0:-132.494,-12.6433,0,-132.494,-12.6433,-132.494	1/2:79:0,50,29:0:0:50,29:1788,1044:-231.331,-85.5449,-70.4934,-146.145,0,-137.415	1/1:41:0,41,0:0:0:41,0:1448,0:-130.592,-12.3422,0,-130.592,-12.3422,-130.592	1/2:78:0,44,34:0:0:44,34:1576,1220:-228.336,-99.826,-86.5807,-128.868,0,-118.633	1/1:34:0,34,0:0:0:34,0:1205,0:-108.754,-10.235,0,-108.754,-10.235,-108.754	1/2:72:0,37,34:0:0:37,34:1328,1220:-207.831,-99.512,-88.3739,-108.318,0,-98.0831	1/1:17:0,17,0:0:0:17,0:599,0:-54.2378,-5.11751,0,-54.2378,-5.11751,-54.2378	1/2:66:0,36,30:0:0:36,30:1275,1076:-191.882,-88.1043,-77.2673,-104.134,0,-95.1035	1/1:71:0,71,0:0:0:71,0:2531,0:-228.041,-21.3731,0,-228.041,-21.3731,-228.041	1/2:91:0,53,38:0:0:53,38:1884,1364:-265.132,-111.622,-95.667,-153.868,0,-142.429	1/2:183:0,110,72:0:0:110,72:3943,2566:-530.736,-209.156,-176.042,-321.578,0,-299.904	1/2:59:0,18,41:0:0:18,41:648,1476:-173.667,-120.794,-115.375,-53.2333,0,-40.8911	1/1:104:0,104,0:0:0:104,0:3710,0:-334.094,-31.3071,0,-334.094,-31.3071,-334.094	1/1:60:0,60,0:0:0:60,0:2152,0:-193.941,-18.0618,0,-193.941,-18.0618,-193.941
chr10	665468	.	TGTC	CGTC,CGTA	159375	PASS	AB=0.471439,0.525817;ABP=31.4149,26.2194;AC=135,51;AF=0.725806,0.274194;AN=186;AO=5460,2123;CIGAR=1X3M,1X2M1X;DP=7604;DPB=7604;DPRA=16.5196,1.04525;EPP=11859.2,4613.05;EPPR=0;GTI=1;LEN=1,4;MEANALT=1.82609,2.21429;MQM=59.9634,59.5742;MQMR=0;NS=93;NUMALT=2;ODDS=1.7486;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=193590,73914;QR=0;RO=0;RPL=5460,2123;RPP=11859.2,4613.05;RPPR=0;RPR=0,0;RUN=1,1;SAF=5460,2123;SAP=11859.2,4613.05;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,9,16:0:0:9,16:324,531:-69.7042,-43.2573,-40.548,-26.7966,0,-21.9801	1/1:99:0,99,0:0:0:99,0:3517,0:-316.74,-29.802,0,-316.74,-29.802,-316.74	1/2:84:0,34,49:0:0:34,49:1203,1728:-238.601,-140.617,-130.382,-97.9868,0,-83.2363	1/2:113:0,54,58:0:0:54,58:1922,2017:-320.653,-164.004,-147.749,-156.67,0,-139.21	1/2:12:0,6,6:0:0:6,6:216,202:-34.334,-16.6978,-14.8917,-17.9843,0,-16.1782	1/2:48:0,34,14:0:0:34,14:1224,492:-140.262,-40.3979,-30.1629,-100.218,0,-96.0039	1/2:138:0,67,71:0:0:67,71:2397,2469:-395.484,-200.018,-179.849,-195.818,0,-174.445	1/2:125:0,68,57:0:0:68,57:2424,1978:-358.718,-161.123,-140.653,-197.946,0,-180.787	1/2:83:0,39,44:0:0:39,44:1382,1527:-236.886,-124.3,-112.559,-112.937,0,-99.6918	1/2:136:0,61,75:0:0:61,75:2140,2595:-385.376,-211.223,-192.86,-174.501,0,-151.924	1/2:57:0,29,27:0:0:29,27:1040,926:-159.908,-75.1604,-66.4306,-84.7384,0,-76.6106	1/2:86:0,39,47:0:0:39,47:1400,1621:-246.225,-132.019,-120.279,-114.559,0,-100.411	1/1:100:0,99,0:0:0:99,0:3504,0:-315.323,-29.802,0,-315.323,-29.802,-315.323	1/1:125:0,125,0:0:0:125,0:4425,0:-398.424,-37.6288,0,-398.424,-37.6288,-398.424	1/1:75:0,75,0:0:0:75,0:2643,0:-238.116,-22.5773,0,-238.116,-22.5773,-238.116	1/1:42:0,41,1:0:0:41,1:1437,36:-129.265,-12.3422,0,-126.327,-9.04499,-126.026	1/2:133:0,69,64:0:0:69,64:2415,2244:-379.432,-182.953,-162.182,-196.829,0,-177.563	1/2:91:0,36,55:0:0:36,55:1277,1923:-260.791,-156.75,-145.913,-104.394,0,-87.8374	1/2:30:0,15,14:0:0:15,14:527,489:-82.6533,-39.7673,-35.2519,-42.8772,0,-38.6628	1/2:74:0,42,30:0:0:42,30:1503,1046:-207.624,-85.0561,-72.4128,-122.561,0,-113.53	1/2:145:0,61,84:0:0:61,84:2170,2923:-414.872,-238.022,-219.659,-177.203,0,-151.916	1/2:82:0,27,54:0:0:27,54:953,1879:-230.376,-152.772,-144.644,-77.5959,0,-61.3403	1/2:40:0,21,19:0:0:21,19:735,659:-113.71,-53.9085,-47.5869,-60.1498,0,-54.4302	1/2:79:0,41,38:0:0:41,38:1454,1316:-225.697,-107.235,-94.893,-118.812,0,-107.373	1/2:44:0,13,31:0:0:13,31:468,1097:-127.895,-89.7066,-85.7932,-38.5463,0,-29.2143	1/1:252:0,250,1:0:0:250,1:8790,36:-790.463,-75.2575,0,-787.526,-72.3201,-787.225	1/1:125:0,125,0:0:0:125,0:4452,0:-400.846,-37.6288,0,-400.846,-37.6288,-400.846	1/2:39:0,10,29:0:0:10,29:352,996:-109.871,-81.2129,-78.2026,-29.0079,0,-20.278	1/2:135:0,64,70:0:0:64,70:2264,2433:-382.277,-197.9,-178.634,-184.475,0,-163.403	1/1:124:0,124,0:0:0:124,0:4417,0:-397.7,-37.3277,0,-397.7,-37.3277,-397.7	1/1:104:0,104,0:0:0:104,0:3683,0:-331.673,-31.3071,0,-331.673,-31.3071,-331.673	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:230:0,230,0:0:0:230,0:8106,0:-729.568,-69.2369,0,-729.568,-69.2369,-729.568	1/2:135:0,57,77:0:0:57,77:2025,2641:-378.612,-213.599,-196.44,-165.002,0,-141.823	1/1:76:0,75,0:0:0:75,0:2635,0:-237.145,-22.5773,0,-237.145,-22.5773,-237.145	.:.:.:.:.:.:.:.	1/2:98:0,52,46:0:0:52,46:1837,1613:-281.196,-131.595,-115.941,-149.953,0,-136.106	1/2:29:0,11,18:0:0:11,18:368,606:-79.2264,-49.4318,-46.1205,-30.1298,0,-24.7113	1/2:74:0,37,37:0:0:37,37:1315,1305:-213.707,-106.547,-95.4094,-107.513,0,-96.3748	1/2:61:0,26,35:0:0:26,35:932,1217:-175.311,-99.2953,-91.4685,-76.3697,0,-65.8337	1/1:71:0,71,0:0:0:71,0:2527,0:-227.682,-21.3731,0,-227.682,-21.3731,-227.682	1/1:90:0,90,0:0:0:90,0:3212,0:-289.302,-27.0927,0,-289.302,-27.0927,-289.302	1/1:64:0,63,0:0:0:63,0:2220,0:-199.811,-18.9649,0,-199.811,-18.9649,-199.811	1/2:149:0,77,72:0:0:77,72:2736,2490:-425.532,-202.58,-179.4,-223.303,0,-201.629	1/1:90:0,90,0:0:0:90,0:3232,0:-291.099,-27.0927,0,-291.099,-27.0927,-291.099	1/2:94:0,47,47:0:0:47,47:1659,1627:-267.663,-132.567,-118.418,-135.446,0,-121.297	1/1:73:0,72,1:0:0:72,1:2536,36:-228.128,-21.6742,0,-225.19,-18.3769,-224.889	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/2:73:0,33,40:0:0:33,40:1184,1410:-211.725,-115.147,-105.213,-96.9343,0,-84.8931	1/2:43:0,25,18:0:0:25,18:892,618:-123.247,-50.5222,-42.9965,-73.0739,0,-67.6554	1/2:8:0,6,2:0:0:6,2:203,72:-22.6752,-6.23466,-4.42848,-16.795,0,-16.1929	1/1:71:0,71,0:0:0:71,0:2511,0:-226.24,-21.3731,0,-226.24,-21.3731,-226.24	1/2:17:0,7,10:0:0:7,10:237,358:-48.7581,-29.5526,-27.4454,-19.5518,0,-16.5415	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:11:0,7,4:0:0:7,4:243,144:-31.8537,-12.1086,-10.0014,-20.1003,0,-18.8962	1/1:90:0,89,0:0:0:89,0:3171,0:-285.379,-26.7917,0,-285.379,-26.7917,-285.379	1/2:163:0,83,80:0:0:83,80:2944,2763:-464.674,-224.817,-199.831,-240.207,0,-216.125	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:168:0,76,91:0:0:76,91:2687,3213:-480.595,-261.753,-238.875,-218.947,0,-191.553	1/1:122:0,121,0:0:0:121,0:4291,0:-386.005,-36.4246,0,-386.005,-36.4246,-386.005	1/1:84:0,84,0:0:0:84,0:2995,0:-269.78,-25.2865,0,-269.78,-25.2865,-269.78	1/1:31:0,30,1:0:0:30,1:1067,25:-96.0878,-9.0309,0,-94.1424,-6.83207,-93.8414	1/2:111:0,37,74:0:0:37,74:1302,2564:-314.713,-208.722,-197.584,-106.342,0,-84.0655	1/1:117:0,113,4:0:0:113,4:4011,142:-360.82,-34.0164,0,-349.25,-22.0912,-348.046	1/2:32:0,12,20:0:0:12,20:424,711:-92.8227,-58.2926,-54.6803,-34.8841,0,-28.8635	1/1:78:0,78,0:0:0:78,0:2796,0:-251.88,-23.4803,0,-251.88,-23.4803,-251.88	1/1:124:0,124,0:0:0:124,0:4410,0:-397.074,-37.3277,0,-397.074,-37.3277,-397.074	1/1:24:0,24,0:0:0:24,0:842,0:-76.0971,-7.22472,0,-76.0971,-7.22472,-76.0971	1/2:111:0,61,50:0:0:61,50:2173,1744:-319.3,-142.179,-123.817,-177.472,0,-162.421	1/1:75:0,74,0:0:0:74,0:2583,0:-232.356,-22.2762,0,-232.356,-22.2762,-232.356	1/1:149:0,147,0:0:0:147,0:5234,0:-470.897,-44.2514,0,-470.897,-44.2514,-470.897	1/1:95:0,95,0:0:0:95,0:3416,0:-307.653,-28.5979,0,-307.653,-28.5979,-307.653	1/1:48:0,48,0:0:0:48,0:1694,0:-152.744,-14.4494,0,-152.744,-14.4494,-152.744	1/1:130:0,127,2:0:0:127,2:4521,71:-406.61,-38.2308,0,-400.825,-32.449,-400.222	1/2:10:0,5,5:0:0:5,5:176,179:-29.2803,-14.9552,-13.4501,-14.6799,0,-13.1747	1/2:81:0,47,34:0:0:47,34:1675,1202:-234.784,-98.2504,-84.102,-136.888,0,-126.653	1/1:80:0,80,0:0:0:80,0:2840,0:-255.837,-24.0824,0,-255.837,-24.0824,-255.837	1/2:144:0,72,72:0:0:72,72:2552,2469:-408.67,-200.786,-179.112,-208.232,0,-186.558	1/1:101:0,101,0:0:0:101,0:3596,0:-323.847,-30.404,0,-323.847,-30.404,-323.847	1/2:75:0,36,39:0:0:36,39:1268,1358:-214.008,-110.776,-99.9384,-103.583,0,-91.8427	1/1:116:0,116,0:0:0:116,0:4061,0:-365.676,-34.9195,0,-365.676,-34.9195,-365.676	1/2:182:0,85,97:0:0:85,97:3013,3378:-520.498,-275.035,-249.448,-245.814,0,-216.614	1/1:42:0,42,0:0:0:42,0:1475,0:-133.041,-12.6433,0,-133.041,-12.6433,-133.041	1/2:110:0,47,63:0:0:47,63:1655,2207:-314.645,-179.911,-165.762,-135.086,0,-116.121	1/1:91:0,91,0:0:0:91,0:3241,0:-291.911,-27.3937,0,-291.911,-27.3937,-291.911	1/2:55:0,24,31:0:0:24,31:851,1081:-157.589,-88.2559,-81.0312,-69.6847,0,-60.3528	1/2:101:0,56,44:0:0:56,44:1988,1557:-288.81,-126.83,-109.972,-162.005,0,-148.76	1/2:70:0,21,49:0:0:21,49:743,1734:-202.11,-141.592,-135.271,-60.8717,0,-46.1212	1/1:55:0,55,0:0:0:55,0:1972,0:-177.755,-16.5567,0,-177.755,-16.5567,-177.755	1/1:110:0,110,0:0:0:110,0:3903,0:-351.464,-33.1133,0,-351.464,-33.1133,-351.464
chr10	684907	.	G	T	113824	PASS	AB=0.517445;ABP=14.2229;AC=135;AF=0.718085;AN=188;AO=5541;CIGAR=1X;DP=7600;DPB=7600;DPRA=16.3333;EPP=12035.1;EPPR=4461.05;GTI=1;LEN=1;MEANALT=1.02151;MQM=56.2678;MQMR=59.9601;NS=94;NUMALT=1;ODDS=2.6744;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197534;QR=73469;RO=2057;RPL=0;RPP=12035.1;RPPR=4469.73;RPR=5541;RUN=1;SAF=5541;SAP=12035.1;SAR=0;SRF=2056;SRP=4461.05;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:5,20:5:176:20:708:-55.7948,0,-8.65927	1/1:81:0,81:0:0:81:2904:-261.429,-24.3834,0	0/1:129:61,68:61:2177:68:2408:-178.017,0,-157.361	0/1:168:82,86:82:2914:86:3048:-223.701,0,-211.92	0/1:53:20,33:20:705:33:1168:-89.2889,0,-47.8182	0/1:23:6,17:6:216:17:600:-47.0069,0,-12.8668	0/1:41:17,24:17:612:24:855:-64.7918,0,-43.0689	0/1:58:22,36:22:792:36:1288:-98.5959,0,-54.1459	0/1:83:42,41:42:1500:41:1440:-104.853,0,-110.309	0/1:53:30,23:30:1080:23:809:-57.0402,0,-81.5587	0/1:73:36,37:36:1296:37:1320:-96.751,0,-94.9687	0/1:99:41,58:41:1468:58:2075:-157.071,0,-102.613	1/1:68:0,68:0:0:68:2412:-216.85,-20.47,0	1/1:85:0,85:0:0:85:3044:-273.596,-25.5876,0	1/1:66:0,66:0:0:66:2348:-211.205,-19.868,0	1/1:88:0,88:0:0:88:3158:-283.896,-26.4906,0	0/1:47:21,26:21:741:26:924:-69.3093,0,-52.8632	0/1:32:16,16:16:576:16:576:-42.4454,0,-42.542	0/1:33:19,14:19:665:14:496:-35.0123,0,-50.2388	0/1:115:49,66:49:1760:66:2337:-175.263,0,-124.063	0/1:158:86,72:86:3069:72:2568:-183.538,0,-228.873	0/1:63:47,16:47:1661:16:563:-31.9462,0,-130.809	0/1:135:44,91:44:1576:91:3248:-251.388,0,-101.493	0/1:60:33,27:33:1161:27:968:-68.6415,0,-86.7329	0/1:60:21,39:21:748:39:1353:-103.929,0,-49.5835	1/1:262:0,262:0:0:262:9384:-842.452,-78.8699,0	1/1:182:0,182:0:0:182:6452:-579.221,-54.7875,0	0/1:24:12,12:12:432:12:432:-31.9776,0,-31.9965	0/1:377:266,111:266:9522:111:3964:-243.102,0,-743.443	1/1:131:0,131:0:0:131:4704:-422.089,-39.4349,0	1/1:110:0,110:0:0:110:3911:-351.682,-33.1133,0	1/1:7:0,7:0:0:7:252:-23.0104,-2.10721,0	0/1:12:6,6:6:216:6:216:-16.1687,0,-16.1782	1/1:6:0,6:0:0:6:212:-19.341,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.0235,-2.10721,0	1/1:13:0,13:0:0:13:464:-42.0867,-3.91339,0	1/1:148:1,147:1:27:147:5272:-471.516,-41.8527,0	0/1:136:57,79:57:2032:79:2832:-213.832,0,-142.211	1/1:64:0,64:0:0:64:2284:-205.342,-19.2659,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:116:56,60:56:2004:60:2144:-158.118,0,-145.714	0/1:38:20,18:20:716:18:640:-46.4624,0,-53.327	0/1:169:70,99:70:2497:99:3540:-267.658,0,-174.103	0/1:63:25,38:25:877:38:1368:-103.646,0,-60.2803	1/1:43:0,43:0:0:43:1540:-137.281,-12.9443,0	1/1:56:0,56:0:0:56:1958:-176.395,-16.8577,0	1/1:59:0,59:0:0:59:2100:-189.081,-17.7608,0	0/1:150:70,80:70:2497:80:2860:-211.769,0,-179.827	1/1:51:0,50:0:0:50:1776:-159.573,-15.0515,0	0/1:116:57,59:57:2033:59:2096:-153.863,0,-148.321	1/1:73:0,73:0:0:73:2573:-231.59,-21.9752,0	0/1:5:3,2:3:108:2:72:-5.32664,0,-8.57002	0/1:80:32,48:32:1140:48:1704:-129.357,0,-78.8268	0/1:94:44,50:44:1576:50:1780:-131.651,0,-113.835	0/1:8:2,6:2:72:6:216:-17.3777,0,-4.42848	1/1:83:0,83:0:0:83:2964:-266.807,-24.9855,0	0/1:43:18,25:18:633:25:892:-67.518,0,-44.3484	0/1:11:8,3:8:288:3:108:-6.76102,0,-22.9561	0/1:12:7,5:7:252:5:180:-12.9336,0,-19.4166	1/1:99:0,99:0:0:99:3520:-315.856,-29.802,0	0/1:114:62,52:62:2224:52:1868:-133.797,0,-166.107	1/1:7:0,7:0:0:7:248:-22.6493,-2.10721,0	0/1:183:81,101:81:2912:101:3600:-267.637,0,-207.315	1/1:127:1,126:1:36:126:4509:-401.536,-34.6325,0	1/1:29:0,29:0:0:29:1028:-92.6618,-8.72987,0	1/1:69:0,69:0:0:69:2444:-220.046,-20.7711,0	0/1:186:61,125:61:2188:125:4464:-344.396,0,-141.194	1/1:177:2,175:2:72:175:6268:-556,-46.4456,0	0/1:44:27,17:27:968:17:612:-42.0077,0,-74.192	1/1:38:0,38:0:0:38:1360:-122.089,-11.4391,0	1/1:36:0,36:0:0:36:1296:-116.911,-10.8371,0	1/1:16:0,16:0:0:16:576:-51.9688,-4.81648,0	0/1:41:11,30:11:392:30:1072:-84.3217,0,-23.2778	1/1:68:0,68:0:0:68:2416:-217.38,-20.47,0	1/1:236:1,235:1:36:235:8405:-750.58,-67.4448,0	1/1:131:0,131:0:0:131:4596:-412.822,-39.4349,0	1/1:143:0,143:0:0:143:5104:-458.496,-43.0473,0	1/1:62:0,62:0:0:62:2205:-198.579,-18.6639,0	0/1:8:5,3:5:180:3:108:-7.66558,0,-14.1438	0/1:79:47,32:47:1688:32:1152:-80.0205,0,-128.426	1/1:77:0,77:0:0:77:2748:-246.51,-23.1793,0	0/1:100:20,80:20:705:80:2821:-223.669,0,-33.6698	1/1:72:0,72:0:0:72:2568:-230.197,-21.6742,0	0/1:71:33,38:33:1176:38:1364:-101.517,0,-84.7746	1/1:32:0,32:0:0:32:1148:-102.934,-9.63296,0	0/1:109:59,50:59:2112:50:1784:-127.703,0,-157.537	1/1:21:0,21:0:0:21:752:-67.9616,-6.32163,0	0/1:81:40,41:40:1417:41:1472:-108.357,0,-103.442	1/1:78:0,78:0:0:78:2780:-250.073,-23.4803,0	0/1:62:39,23:39:1400:23:804:-53.9111,0,-107.635	0/1:159:77,82:77:2748:82:2932:-215.921,0,-199.67	0/1:43:33,10:33:1184:10:356:-19.4171,0,-93.924	1/1:79:0,79:0:0:79:2818:-252.878,-23.7814,0	1/1:73:1,72:1:36:72:2576:-228.169,-18.3769,0
chr10	684924	.	TCTGATT	TCTGGTC,TCTGGTT	159797	PASS	AB=0.519435,0.473263;ABP=16.9369,29.3693;AC=135,53;AF=0.718085,0.281915;AN=188;AO=5556,2022;CIGAR=4M1X1M1X,4M1X2M;DP=7648;DPB=7647.86;DPRA=16.4366,1.18249;EPP=11989.7,4298.7;EPPR=5.18177;GTI=1;LEN=7,1;MEANALT=2.25806,2.52542;MQM=56.351,59.9817;MQMR=60;NS=94;NUMALT=2;ODDS=1.89856;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=195321,72444;QR=35;RO=1;RPL=9,11;RPP=11989.7,4298.7;RPPR=5.18177;RPR=5547,2011;RUN=1,1;SAF=5556,2022;SAP=12067.7,4393.73;SAR=0,0;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,20,6:0:0:20,6:673,216:-72.3301,-17.9843,-11.9637,-54.7,0,-52.8938	1/1:82:0,81,1:0:0:81,1:2837,36:-255.051,-24.3834,0,-252.114,-21.0862,-251.813	1/2:131:0,70,61:0:0:70,61:2433,2196:-377.214,-179.541,-158.469,-198.027,0,-179.664	1/2:166:0,84,81:0:0:84,81:2955,2912:-477.841,-237.571,-212.285,-240.266,0,-215.882	1/2:55:0,34,21:0:0:34,21:1170,752:-155.557,-61.6846,-51.4496,-94.224,0,-87.9024	1/2:24:0,18,6:0:0:18,6:618,216:-67.7973,-17.9843,-12.5658,-50.1681,0,-48.3619	1/2:41:0,24,16:0:0:24,16:862,576:-117.177,-46.9989,-39.7742,-70.1778,0,-65.3614	1/2:58:0,35,22:0:0:35,22:1212,792:-163.089,-64.6306,-54.0945,-98.4609,0,-91.8383	1/2:82:0,42,40:0:0:42,40:1496,1432:-238.901,-117.136,-104.493,-122.122,0,-110.08	1/2:54:0,22,32:0:0:22,32:780,1148:-157.44,-93.9969,-87.3742,-63.7985,0,-54.1655	1/2:72:0,36,35:0:0:36,35:1279,1260:-206.776,-102.844,-92.0065,-103.964,0,-93.4275	1/2:97:0,57,40:0:0:57,40:2040,1436:-283.786,-117.495,-100.336,-166.65,0,-154.609	1/1:68:0,66,0:0:0:66,0:2346,0:-210.648,-19.868,0,-210.648,-19.868,-210.648	1/1:85:0,84,0:0:0:84,0:2977,0:-267.412,-25.2865,0,-267.412,-25.2865,-267.412	1/1:67:0,67,0:0:0:67,0:2345,0:-210.662,-20.169,0,-210.662,-20.169,-210.662	1/1:90:0,89,0:0:0:89,0:3152,0:-283.095,-26.7917,0,-283.095,-26.7917,-283.095	1/2:48:0,26,22:0:0:26,22:917,792:-139.627,-64.983,-57.1562,-75.0008,0,-68.3781	1/2:34:0,17,16:0:0:17,16:588,576:-94.7931,-47.1021,-41.9845,-47.785,0,-42.9685	1/2:32:0,14,18:0:0:14,18:490,648:-93.0783,-53.2333,-49.0189,-40.1991,0,-34.7806	1/2:116:0,68,48:0:0:68,48:2417,1724:-337.432,-140.994,-120.524,-196.796,0,-182.346	1/2:158:0,71,85:0:0:71,85:2516,3044:-452.964,-248.306,-226.933,-204.717,0,-179.13	1/2:62:0,17,44:0:0:17,44:593,1576:-176.58,-128.48,-123.363,-48.101,0,-34.8557	1/2:134:0,90,43:0:0:90,43:3189,1525:-383.609,-124.246,-97.1537,-259.366,0,-246.422	1/2:60:0,26,33:0:0:26,33:910,1188:-170.959,-97.0023,-89.1755,-74.0178,0,-64.0838	1/2:57:0,39,17:0:0:39,17:1366,605:-160.456,-49.4261,-37.6859,-111.146,0,-106.029	1/1:265:0,263,0:0:0:263,0:9134,0:-820.408,-79.1709,0,-820.408,-79.1709,-820.408	1/1:183:0,182,0:0:0:182,0:6420,0:-576.445,-54.7875,0,-576.445,-54.7875,-576.445	1/2:24:0,12,11:0:0:12,11:427,396:-67.1028,-32.3207,-28.7084,-34.7891,0,-31.4777	1/2:380:0,110,263:0:0:110,263:3890,9427:-1085.38,-768.903,-735.79,-316.518,0,-237.348	1/1:132:0,132,0:0:0:132,0:4638,0:-416.793,-39.736,0,-416.793,-39.736,-416.793	1/1:113:0,113,0:0:0:113,0:4019,0:-361.428,-34.0164,0,-361.428,-34.0164,-361.428	1/1:7:0,7,0:0:0:7,0:252,0:-23.0104,-2.10721,0,-23.0104,-2.10721,-23.0104	1/2:13:0,6,7:0:0:6,7:216,239:-37.3593,-19.7355,-17.9293,-17.9749,0,-15.8677	1/1:6:0,6,0:0:0:6,0:214,0:-19.5108,-1.80618,0,-19.5108,-1.80618,-19.5108	1/1:7:0,7,0:0:0:7,0:252,0:-23.0235,-2.10721,0,-23.0235,-2.10721,-23.0235	1/1:13:0,13,0:0:0:13,0:458,0:-41.5436,-3.91339,0,-41.5436,-3.91339,-41.5436	1/1:151:1,150,0:1:35:150,0:5336,0:-476.489,-41.9569,0,-476.79,-45.1545,-479.637	1/2:133:0,79,52:0:0:79,52:2753,1872:-376.494,-152.871,-129.089,-223.742,0,-208.089	1/1:67:0,66,1:0:0:66,1:2341,36:-210.133,-19.868,0,-207.195,-16.5707,-206.894	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/2:114:0,60,54:0:0:60,54:2110,1928:-329.13,-157.541,-139.479,-171.943,0,-155.687	1/2:38:0,18,20:0:0:18,20:643,716:-111.143,-58.7456,-53.327,-52.7545,0,-46.7339	1/2:169:0,101,68:0:0:101,68:3517,2421:-483.393,-197.67,-167.266,-286.076,0,-265.606	1/2:63:0,38,25:0:0:38,25:1366,896:-184.07,-73.4346,-61.9955,-110.993,0,-103.467	1/1:43:0,43,0:0:0:43,0:1507,0:-135.107,-12.9443,0,-135.107,-12.9443,-135.107	1/1:56:0,56,0:0:0:56,0:1964,0:-176.924,-16.8577,0,-176.924,-16.8577,-176.924	1/1:60:0,58,0:0:0:58,0:2062,0:-185.495,-17.4597,0,-185.495,-17.4597,-185.495	1/2:146:0,80,64:0:0:80,64:2797,2296:-414.465,-187.348,-163.266,-227.183,0,-207.917	1/1:50:0,50,0:0:0:50,0:1776,0:-159.956,-15.0515,0,-159.956,-15.0515,-159.956	1/2:117:0,60,57:0:0:60,57:2098,2035:-336.812,-166.263,-148.201,-170.903,0,-153.744	1/1:74:0,74,0:0:0:74,0:2591,0:-233.209,-22.2762,0,-233.209,-22.2762,-233.209	1/2:5:0,2,3:0:0:2,3:72,108:-15.0421,-9.17208,-8.57002,-6.22973,0,-5.32664	1/2:79:0,48,31:0:0:48,31:1687,1116:-228.48,-91.4198,-76.9703,-137.416,0,-128.084	1/2:98:0,53,45:0:0:53,45:1877,1597:-282.83,-130.472,-114.517,-152.712,0,-139.165	1/2:8:0,6,2:0:0:6,2:216,72:-23.8546,-6.23466,-4.42848,-17.9797,0,-17.3777	1/1:84:0,84,0:0:0:84,0:2953,0:-265.879,-25.2865,0,-265.879,-25.2865,-265.879	1/2:43:0,25,17: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chr10	707071	.	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chr10	762908	.	G	A	18837.9	PASS	AB=0.456539;ABP=44.9127;AC=49;AF=0.263441;AN=186;AO=1170;CIGAR=1X;DP=5093;DPB=5093;DPRA=1.03809;EPP=2517.64;EPPR=8476.15;GTI=2;LEN=1;MEANALT=1.01887;MQM=59.994;MQMR=59.9921;NS=93;NUMALT=1;ODDS=1.17965;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41804;QR=140022;RO=3922;RPL=3;RPP=2517.64;RPPR=8476.15;RPR=1167;RUN=1;SAF=1170;SAP=2543.63;SAR=0;SRF=3922;SRP=8519.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:15,3:15:504:3:108:-4.65663,0,-40.2597	0/0:97:97,0:97:3450:0:0:0,-29.1999,-310.711	0/1:79:42,37:42:1476:37:1320:-95.3206,0,-109.35	0/1:109:68,41:68:2436:41:1472:-99.9639,0,-186.683	0/1:44:36,8:36:1292:8:288:-13.0221,0,-103.338	0/1:20:5,15:5:180:15:527:-41.7402,0,-10.5315	0/1:53:35,18:35:1252:18:648:-42.6973,0,-97.0305	0/1:72:48,24:48:1724:24:843:-54.5133,0,-133.771	0/1:78:54,24:54:1921:24:860:-54.2415,0,-149.674	0/1:53:20,33:20:720:33:1170:-89.6525,0,-49.1742	0/1:40:22,18:22:780:18:644:-46.2494,0,-58.4818	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/1:26:14,12:14:500:12:428:-31.0316,0,-37.5094	0/1:30:13,17:13:464:17:612:-46.3825,0,-33.0666	0/1:133:60,73:60:2151:73:2605:-194.66,0,-153.82	0/1:86:53,33:53:1908:33:1184:-80.9797,0,-146.109	0/1:39:16,23:16:572:23:828:-63.1039,0,-40.0733	0/1:57:41,16:41:1468:16:561:-33.6584,0,-115.257	0/1:26:13,13:13:468:13:449:-32.9107,0,-34.6329	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:187:186,1:186:6652:1:36:0,-52.6943,-595.161	0/0:120:120,0:120:4292:0:0:0,-36.1236,-386.458	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:120:52,67:52:1864:67:2401:-180.164,0,-131.857	0/1:60:28,32:28:1008:32:1152:-85.9283,0,-72.9746	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:114:114,0:114:4054:0:0:0,-34.3174,-365.046	0/1:69:40,29:40:1436:29:1044:-73.5037,0,-108.767	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:78:35,43:35:1256:43:1518:-113.43,0,-89.8649	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:78:45,33:45:1608:33:1180:-83.0277,0,-121.53	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	0/0:43:43,0:43:1506:0:0:0,-12.9443,-135.832	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:47:46,1:46:1644:1:36:0,-10.5501,-144.65	0/1:87:54,33:54:1913:33:1184:-80.6787,0,-146.256	0/0:81:81,0:81:2862:0:0:0,-24.3834,-257.816	0/1:55:24,31:24:864:31:1082:-81.1283,0,-61.5259	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:57:26,31:26:932:31:1112:-83.2326,0,-67.0402	0/1:69:28,41:28:1004:41:1461:-111.014,0,-69.9048	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/1:7:5,2:5:165:2:72:-4.72951,0,-13.0664	0/0:75:75,0:75:2669:0:0:0,-22.5772,-240.454	0/1:83:44,39:44:1564:39:1398:-101.133,0,-116.066	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:113:73,40:73:2612:40:1440:-95.8813,0,-201.312	0/0:110:110,0:110:3939:0:0:0,-33.1133,-354.701	0/0:35:34,1:34:1216:1:36:0,-6.93777,-106.148	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:62:29,33:29:1040:33:1184:-88.2045,0,-75.2505	0/0:126:125,1:125:4448:1:36:0,-34.3315,-396.893	0/1:22:12,10:12:428:10:360:-26.1216,0,-32.2361	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:72:41,31:41:1456:31:1116:-79.0775,0,-109.662	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/0:233:233,0:233:8284:0:0:0,-70.14,-745.38	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/0:73:73,0:73:2605:0:0:0,-21.9752,-234.697	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	.:.:.:.:.:.:.:.	0/1:75:40,35:40:1428:35:1248:-90.0476,0,-106.24	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/1:85:37,48:37:1309:48:1701:-127.786,0,-92.522	0/0:79:79,0:79:2814:0:0:0,-23.7814,-253.499	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:63:37,26:37:1316:26:928:-64.8715,0,-99.7769	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:38:19,19:19:680:19:684:-50.4512,0,-50.09	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:37:25,12:25:884:12:428:-27.7207,0,-68.7403	0/1:59:27,32:27:968:32:1148:-85.8691,0,-69.6766	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056
chr10	762917	.	G	A	101621	PASS	AB=0.548936;ABP=56.7797;AC=137;AF=0.736559;AN=186;AO=4023;CIGAR=1X;DP=5194;DPB=5194;DPRA=0;EPP=3379.24;EPPR=2434.14;GTI=3;LEN=1;MEANALT=1;MQM=59.9881;MQMR=59.994;NS=93;NUMALT=1;ODDS=0.326401;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143872;QR=41699;RO=1171;RPL=3262;RPP=3379.24;RPPR=2434.14;RPR=761;RUN=1;SAF=4023;SAP=8738.84;SAR=0;SRF=1171;SRP=2545.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:2,14:2:72:14:504:-40.8816,0,-2.02024	1/1:98:0,98:0:0:98:3516:-316.649,-29.5009,0	0/1:80:37,43:37:1332:43:1525:-113.459,0,-96.1	0/1:117:42,75:42:1481:75:2648:-203.344,0,-98.362	0/1:45:8,37:8:288:37:1320:-105.556,0,-12.7211	0/1:19:14,5:14:474:5:180:-10.8325,0,-37.2601	0/1:53:19,34:19:684:34:1205:-92.7993,0,-45.9357	0/1:73:24,49:24:860:49:1764:-137.069,0,-55.7466	0/1:78:23,55:23:816:55:1976:-154.624,0,-50.2814	0/1:54:33,21:33:1154:21:750:-51.5699,0,-87.9066	0/1:43:18,25:18:648:25:876:-66.21,0,-45.7076	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:69:0,69:0:0:69:2469:-222.462,-20.7711,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:32:0,32:0:0:32:1133:-102.277,-9.63296,0	0/1:33:14,19:14:504:19:669:-50.6,0,-35.7641	0/1:27:13,14:13:453:14:504:-37.5703,0,-32.9714	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3825	0/1:135:73,62:73:2597:62:2220:-159.425,0,-193.338	0/1:86:33,53:33:1184:53:1900:-145.389,0,-80.9797	0/1:39:24,15:24:864:15:540:-37.1964,0,-66.3424	0/1:57:16,41:16:576:41:1468:-115.257,0,-35.0163	0/1:25:12,13:12:417:13:468:-34.9339,0,-30.3345	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	1/1:195:1,194:1:36:194:6980:-624.661,-55.1026,0	1/1:122:0,122:0:0:122:4329:-389.785,-36.7257,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:123:69,54:69:2476:54:1940:-137.849,0,-186.067	0/1:62:33,29:33:1169:29:1040:-75.2505,0,-86.8514	1/1:95:0,95:0:0:95:3405:-306.662,-28.5979,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:114:0,114:0:0:114:4104:-369.543,-34.3174,0	0/1:69:29,40:29:1044:40:1432:-108.407,0,-73.5037	1/1:31:0,31:0:0:31:1092:-98.5868,-9.33193,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:80:44,36:44:1576:36:1292:-92.5014,0,-118.049	0/1:31:14,17:14:504:17:610:-45.9009,0,-36.3662	0/1:75:30,45:30:1072:45:1601:-121.801,0,-74.2152	0/1:25:15,10:15:540:10:350:-24.31,0,-41.4108	1/1:46:0,46:0:0:46:1637:-147.617,-13.8474,0	1/1:73:0,73:0:0:73:2614:-235.508,-21.9752,0	1/1:51:0,51:0:0:51:1812:-163.362,-15.3525,0	0/1:87:33,54:33:1184:54:1940:-148.687,0,-80.6787	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	0/1:56:31,25:31:1097:25:896:-64.1027,0,-82.1803	1/1:118:0,118:0:0:118:4218:-379.8,-35.5215,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:57:31,26:31:1112:26:936:-67.4008,0,-83.2326	0/1:69:41,28:41:1453:28:1008:-70.2653,0,-110.293	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	0/1:85:39,46:39:1400:46:1652:-123.381,0,-100.712	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:114:40,74:40:1432:74:2650:-204.429,0,-94.8602	1/1:111:0,111:0:0:111:3976:-358.03,-33.4143,0	1/1:35:1,34:1:36:34:1223:-106.779,-6.93778,0	1/1:40:0,40:0:0:40:1405:-126.745,-12.0412,0	0/1:61:31,30:31:1101:30:1065:-77.7969,0,-81.0355	1/1:126:1,125:1:36:125:4463:-398.24,-34.3315,0	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3601	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:64:1,63:1:36:63:2239:-198.174,-15.6676,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:71:30,41:30:1076:41:1461:-110.411,0,-75.7797	1/1:68:0,68:0:0:68:2433:-219.224,-20.47,0	1/1:246:0,246:0:0:246:8758:-788.19,-74.0534,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:78:0,78:0:0:78:2781:-250.53,-23.4803,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	.:.:.:.:.:.:.:.	0/1:78:35,43:35:1252:43:1532:-114.692,0,-89.5047	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:88:49,39:49:1666:39:1392:-99.0884,0,-123.724	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:62:26,36:26:936:36:1288:-97.5597,0,-65.891	1/1:24:0,24:0:0:24:850:-76.8182,-7.22472,0	0/1:40:19,21:19:684:21:756:-56.326,0,-49.8491	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:37:11,26:11:396:26:931:-72.9705,0,-24.8446	0/1:58:31,27:31:1073:27:968:-69.9776,0,-79.4134	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	1/1:47:0,47:0:0:47:1674:-150.877,-14.1484,0	1/1:43:1,42:1:36:42:1512:-132.776,-9.34602,0
chr10	763125	.	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chr10	779725	.	T	C	52155.3	PASS	AB=0.562949;ABP=185.084;AC=51;AF=0.274194;AN=186;AO=2984;CIGAR=1X;DP=9334;DPB=9334;DPRA=1.27577;EPP=6482.68;EPPR=13787.5;GTI=2;LEN=1;MEANALT=1.01852;MQM=54.2349;MQMR=59.6361;NS=93;NUMALT=1;ODDS=0.411969;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106922;QR=227411;RO=6348;RPL=0;RPP=6482.68;RPPR=13787.5;RPR=2984;RUN=1;SAF=2984;SAP=6482.68;SAR=0;SRF=6348;SRP=13787.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:10,47:10:345:47:1678:-133.681,0,-14.2221	0/0:104:104,0:104:3744:0:0:0,-31.3071,-337.093	0/1:130:56,74:56:2008:74:2660:-199.667,0,-141.838	0/1:127:59,68:59:2116:68:2443:-181.342,0,-152.382	0/1:81:50,31:50:1800:31:1112:-75.8486,0,-137.857	0/1:22:8,14:8:284:14:500:-38.513,0,-19.2724	0/1:125:55,70:55:1957:70:2505:-187.494,0,-138.643	0/1:261:122,139:122:4327:139:4980:-367.219,0,-310.935	0/1:93:50,43:50:1796:43:1540:-110.463,0,-133.913	0/1:149:73,76:73:2593:76:2732:-200.956,0,-188.759	0/1:32:15,17:15:540:17:612:-45.6563,0,-39.3036	0/1:64:34,30:34:1216:30:1067:-76.8426,0,-90.4691	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.562	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.779	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.943	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.376	0/1:63:31,32:31:1112:32:1148:-84.4084,0,-81.4076	0/1:42:14,28:14:500:28:1008:-77.7943,0,-32.692	0/1:21:8,13:8:288:13:468:-36.0313,0,-19.9458	0/1:197:91,106:91:3268:106:3789:-281.492,0,-234.987	0/1:132:63,69:63:2252:69:2468:-181.318,0,-163.182	0/1:307:85,222:85:3056:222:7968:-622.832,0,-182.848	0/1:51:27,24:27:972:24:864:-62.5851,0,-72.2658	0/1:127:55,71:55:1964:71:2529:-188.593,0,-138.718	0/1:80:34,46:34:1209:46:1644:-123.821,0,-84.8333	0/0:367:364,3:364:13027:3:108:0,-100.406,-1161.98	0/0:248:248,0:248:8920:0:0:0,-74.6554,-801.932	0/1:22:6,16:6:201:16:576:-45.2209,0,-11.7944	0/1:301:99,202:99:3556:202:7248:-561.248,0,-229.576	0/1:153:85,68:85:3056:68:2440:-173.233,0,-229.15	0/0:133:131,2:131:4674:2:59:0,-34.4387,-415.185	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3996	0/1:14:9,5:9:316:5:180:-12.3142,0,-24.5644	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2592	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0243	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5354	0/0:139:139,0:139:4992:0:0:0,-41.8432,-449.411	0/1:243:123,120:123:4382:120:4295:-311.693,0,-321.364	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.5539	.:.:.:.:.:.:.:.	0/1:146:76,70:76:2709:70:2496:-180.5,0,-200.091	0/1:32:11,21:11:396:21:752:-58.19,0,-26.3405	0/1:170:86,84:86:3088:84:3008:-218.872,0,-226.964	0/1:52:29,23:29:1044:23:828:-58.9593,0,-78.6166	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.367	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.839	0/0:147:147,0:147:5273:0:0:0,-44.2514,-474.058	0/1:205:81,124:81:2904:124:4437:-337.398,0,-199.882	0/0:113:113,0:113:4064:0:0:0,-34.0164,-365.93	0/1:167:60,107:60:2156:107:3825:-292.834,0,-144.03	0/0:181:181,0:181:6477:0:0:0,-54.4864,-583.007	0/1:10:7,3:7:252:3:108:-7.0576,0,-20.0163	0/1:138:56,82:56:2008:82:2930:-221.472,0,-139.231	0/1:30:19,11:19:669:11:396:-26.8862,0,-51.5012	0/1:23:5,18:5:180:18:648:-50.465,0,-9.62837	0/0:103:103,0:103:3687:0:0:0,-31.0061,-332.009	0/1:25:16,9:16:572:9:324:-21.8741,0,-44.283	0/1:9:5,4:5:180:4:144:-10.6006,0,-13.8428	0/1:15:7,8:7:252:8:280:-21.0176,0,-18.5135	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.192	0/1:108:56,52:56:2012:52:1860:-134.959,0,-148.837	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:261:112,149:112:4012:149:5344:-402,0,-282.676	0/0:217:217,0:217:7769:0:0:0,-65.3235,-699.048	0/0:89:89,0:89:3189:0:0:0,-26.7917,-287.211	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:161:74,87:74:2644:87:3124:-231.998,0,-189.708	0/0:67:66,0:66:2376:0:0:0,-19.868,-213.731	0/1:12:2,10:2:72:10:356:-28.7252,0,-3.22436	0/0:68:68,0:68:2444:0:0:0,-20.47,-219.959	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.753	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:114:65,49:65:2301:49:1748:-122.386,0,-173.006	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.642	0/0:141:141,0:141:5049:0:0:0,-42.4452,-454.438	0/0:238:238,0:238:8560:0:0:0,-71.6451,-770.371	0/0:217:217,0:217:7766:0:0:0,-65.3235,-698.92	0/0:170:169,1:169:6076:1:36:0,-47.5859,-542.835	0/1:23:10,13:10:356:13:468:-35.2462,0,-25.4576	0/1:130:49,81:49:1756:81:2916:-221.638,0,-119.172	0/0:153:153,0:153:5455:0:0:0,-46.0576,-490.997	0/1:253:88,165:88:3168:165:5928:-456.254,0,-209.165	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.717	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.416	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:96:37,59:37:1313:59:2120:-161.713,0,-89.5615	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:56:25,31:25:900:31:1112:-83.1872,0,-64.447	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.458	0/1:34:17,17:17:612:17:612:-45.082,0,-45.1784	0/1:57:32,25:32:1133:25:885:-62.697,0,-84.9835	0/1:69:24,45:24:849:45:1616:-124.584,0,-55.9402	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.541	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.804
chr10	784109	.	GTA	ATT,ATA	265066	PASS	AB=0.512663,0.486166;ABP=12.5243,14.3655;AC=135,53;AF=0.718085,0.281915;AN=188;AO=9237,3335;CIGAR=1X1M1X,1X2M;DP=12590;DPB=12590.3;DPRA=67.6774,1.08902;EPP=20034.9,7244.87;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.7957,2.08333;MQM=53.9134,59.6672;MQMR=60;NS=94;NUMALT=2;ODDS=4.49767;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=326396,119180;QR=36;RO=1;RPL=3,0;RPP=20034.9,7244.87;RPPR=5.18177;RPR=9234,3335;RUN=1,1;SAF=2,0;SAP=20043.5,7244.87;SAR=9235,3335;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:51:0,33,18:0:0:33,18:1175,640:-147.979,-52.5108,-42.5768,-95.8233,0,-90.4047	1/1:234:0,234,0:0:0:234,0:8337,0:-745.163,-70.441,0,-745.163,-70.441,-745.163	1/2:250:0,120,130:0:0:120,130:4204,4628:-718.015,-377.482,-341.359,-340.885,0,-301.751	1/2:324:0,142,182:0:0:142,182:5047,6492:-939.866,-529.519,-486.773,-410.702,0,-355.915	1/2:89:0,67,22:0:0:67,22:2369,777:-255.19,-63.6171,-43.4481,-191.925,0,-185.303	1/2:44:0,29,15:0:0:29,15:1022,540:-127.381,-44.4129,-35.683,-83.325,0,-78.8095	1/2:82:0,42,40:0:0:42,40:1470,1426:-236.013,-116.558,-103.915,-119.807,0,-107.766	1/2:262:0,148,114:0:0:148,114:5203,4075:-751.756,-332.59,-288.038,-419.519,0,-385.201	1/2:76:0,40,36:0:0:40,36:1393,1277:-216.936,-104.115,-92.0739,-113.172,0,-102.335	1/2:119:0,55,64:0:0:55,64:1933,2278:-342.31,-186.008,-169.451,-156.654,0,-137.388	1/2:97:0,49,48:0:0:49,48:1743,1715:-282.032,-140.182,-125.432,-142.206,0,-127.756	1/2:87:0,41,46:0:0:41,46:1458,1648:-252.279,-134.729,-122.386,-117.906,0,-104.058	1/1:83:0,83,0:0:0:83,0:2919,0:-261.871,-24.9855,0,-261.871,-24.9855,-261.871	1/1:132:0,132,0:0:0:132,0:4667,0:-416.824,-39.736,0,-416.824,-39.736,-416.824	1/1:82:0,81,1:0:0:81,1:2890,36:-259.308,-24.3834,0,-256.371,-21.0862,-256.07	1/1:56:0,56,0:0:0:56,0:1981,0:-178.196,-16.8577,0,-178.196,-16.8577,-178.196	1/2:101:0,55,46:0:0:55,46:1961,1644:-293.548,-134.34,-117.783,-159.565,0,-145.717	1/2:66:0,29,37:0:0:29,37:1032,1332:-192.913,-109.036,-100.306,-84.2335,0,-73.0954	1/2:56:0,33,23:0:0:33,23:1135,828:-159.775,-67.9204,-57.9864,-92.207,0,-85.2833	1/2:221:0,117,102:0:0:117,102:4132,3660:-633.688,-298.536,-263.315,-335.157,0,-304.452	1/2:157:0,94,63:0:0:94,63:3335,2243:-454.043,-183.149,-154.852,-271.249,0,-252.284	1/2:162:0,50,112:0:0:50,112:1747,4009:-468.867,-327.282,-312.23,-141.937,0,-108.221	1/2:96:0,72,23:0:0:72,23:2551,828:-274.564,-67.7045,-46.0304,-207.001,0,-200.078	1/2:169:0,94,73:0:0:94,73:3322,2620:-483.375,-213.678,-185.381,-269.694,0,-247.719	1/2:84:0,34,50:0:0:34,50:1210,1781:-243.474,-145.508,-135.273,-98.3202,0,-83.2687	1/1:538:0,537,1:0:0:537,1:18933,36:-1699.64,-161.653,0,-1696.71,-158.356,-1696.41	1/1:385:0,385,0:0:0:385,0:13613,0:-1218.45,-115.897,0,-1218.45,-115.897,-1218.45	1/2:39:0,25,14:0:0:25,14:892,504:-113.762,-41.4837,-33.9579,-72.6366,0,-68.4222	1/2:306:0,115,191:0:0:115,191:4056,6838:-887.874,-557.967,-523.348,-330.262,0,-272.765	1/2:181:0,106,75:0:0:106,75:3733,2668:-519.969,-217.65,-185.741,-302.672,0,-280.095	1/1:202:0,202,0:0:0:202,0:7115,0:-637.712,-60.8081,0,-637.712,-60.8081,-637.712	1/1:5:0,5,0:0:0:5,0:178,0:-16.2193,-1.50515,0,-16.2193,-1.50515,-16.2193	1/2:30:0,22,8:0:0:22,8:769,288:-86.0639,-23.8592,-17.2365,-62.5613,0,-60.1531	1/1:3:0,3,0:0:0:3,0:108,0:-10.0498,-0.90309,0,-10.0498,-0.90309,-10.0498	1/1:22:0,22,0:0:0:22,0:775,0:-69.5398,-6.62266,0,-69.5398,-6.62266,-69.5398	1/1:12:0,12,0:0:0:12,0:418,0:-37.7614,-3.61236,0,-37.7614,-3.61236,-37.7614	1/1:215:0,215,0:0:0:215,0:7630,0:-686.087,-64.7215,0,-686.087,-64.7215,-686.087	1/2:331:0,145,186:0:0:145,186:5071,6645:-952.073,-542.075,-498.425,-410.35,0,-354.359	1/1:74:0,73,1:0:0:73,1:2571,32:-230.539,-21.9752,0,-227.961,-19.0769,-227.66	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:165:0,87,78:0:0:87,78:3080,2792:-477.754,-228.035,-201.846,-250.074,0,-226.594	1/2:39:0,19,20:0:0:19,20:682,716:-114.186,-58.7242,-53.0046,-55.8193,0,-49.7987	1/2:172:0,94,77:0:0:94,77:3329,2760:-495.457,-225.134,-196.837,-270.372,0,-247.193	1/2:113:0,51,62:0:0:51,62:1804,2212:-327.25,-180.672,-165.319,-146.933,0,-128.269	1/1:70:0,70,0:0:0:70,0:2442,0:-219.3,-21.0721,0,-219.3,-21.0721,-219.3	1/1:155:0,155,0:0:0:155,0:5496,0:-494.011,-46.6597,0,-494.011,-46.6597,-494.011	1/1:151:0,149,0:0:0:149,0:5257,0:-468.473,-44.8535,0,-468.473,-44.8535,-468.473	1/2:285:0,166,119:0:0:166,119:5869,4244:-821.662,-346.059,-296.088,-475.958,0,-440.135	1/1:148:0,148,0:0:0:148,0:5244,0:-471.295,-44.5524,0,-471.295,-44.5524,-471.295	1/2:275:0,120,155:0:0:120,155:4232,5553:-796.307,-453.22,-417.096,-343.441,0,-296.782	1/1:236:0,235,0:0:0:235,0:8278,0:-744.032,-70.7421,0,-744.032,-70.7421,-744.032	1/2:14:0,6,8:0:0:6,8:211,284:-40.6567,-23.4951,-21.6889,-17.5144,0,-15.1062	1/2:140:0,77,62:0:0:77,62:2723,2205:-400.204,-179.754,-156.574,-220.523,0,-201.859	1/2:61:0,38,23:0:0:38,23:1329,816:-174.767,-66.7921,-55.353,-108.328,0,-101.404	1/2:55:0,27,28:0:0:27,28:946,1008:-158.923,-82.5993,-74.4715,-76.6772,0,-68.2483	1/1:228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chr10	785363	.	C	T	167793	PASS	AB=0.444113;ABP=194.267;AC=136;AF=0.723404;AN=188;AO=8231;CIGAR=1X;DP=12172;DPB=12172;DPRA=0;EPP=17876.4;EPPR=8543.41;GTI=1;LEN=1;MEANALT=1.08511;MQM=59.9858;MQMR=59.9985;NS=94;NUMALT=1;ODDS=1.0887;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=294065;QR=140750;RO=3933;RPL=0;RPP=17876.4;RPPR=8543.41;RPR=8231;RUN=1;SAF=8231;SAP=17876.4;SAR=0;SRF=3933;SRP=8543.41;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:121:77,44:77:2772:44:1565:-104.715,0,-213.296	1/1:83:0,83:0:0:83:2943:-265.101,-24.9855,0	0/1:243:134,109:134:4765:109:3912:-279.122,0,-355.859	0/1:267:154,113:154:5513:113:4025:-282.062,0,-415.919	0/1:93:44,49:44:1568:49:1760:-130.688,0,-113.416	0/1:35:16,19:16:576:19:680:-50.9931,0,-41.6389	0/1:124:66,58:66:2368:58:2084:-150.502,0,-176.05	0/1:176:125,51:125:4465:51:1797:-109.029,0,-349.038	0/1:228:95,133:95:3392:133:4657:-350.656,0,-236.861	0/1:122:63,59:63:2260:59:2108:-153.264,0,-166.937	0/1:90:41,49:41:1476:49:1756:-131.231,0,-106.043	0/1:165:94,71:94:3372:71:2525:-177.831,0,-254.025	1/1:125:0,125:0:0:125:4465:-402.02,-37.6288,0	1/1:194:0,194:0:0:194:6934:-624.124,-58.3998,0	1/1:106:0,106:0:0:106:3812:-343.276,-31.9092,0	1/1:169:0,169:0:0:169:6015:-541.446,-50.8741,0	0/1:57:31,26:31:1116:26:932:-67.0402,0,-83.593	0/1:51:24,27:24:855:27:972:-72.4454,0,-61.9176	0/1:71:33,38:33:1180:38:1368:-102.048,0,-85.1349	0/1:218:115,103:115:4120:103:3658:-263.798,0,-305.36	0/1:301:199,101:199:7109:101:3598:-233.395,0,-549.24	0/1:102:76,25:76:2712:25:896:-50.3406,0,-213.708	0/1:161:96,65:96:3440:65:2324:-160.954,0,-261.347	0/1:150:75,75:75:2696:75:2685:-196.738,0,-197.727	0/1:179:98,80:98:3496:80:2872:-204.921,0,-261.057	1/1:267:5,262:5:180:262:9369:-826.621,-63.8229,0	1/1:245:0,245:0:0:245:8789:-790.995,-73.7524,0	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	0/1:320:178,142:178:6377:142:5070:-360.113,0,-477.687	0/1:141:70,71:70:2508:71:2533:-185.775,0,-183.527	1/1:150:0,150:0:0:150:5368:-483.252,-45.1545,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:52:31,21:31:1093:21:748:-51.9917,0,-83.0241	1/1:8:0,8:0:0:8:269:-24.5361,-2.40824,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:46:1,45:1:36:45:1612:-141.772,-10.2491,0	1/1:238:0,238:0:0:238:8460:-761.401,-71.6451,0	0/1:107:65,42:65:2332:42:1508:-103.804,0,-177.929	1/1:97:0,97:0:0:97:3476:-313.051,-29.1999,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:134:66,67:66:2368:67:2378:-174.026,0,-173.129	0/1:72:41,31:41:1467:31:1112:-78.7172,0,-110.651	0/1:320:179,140:179:6404:140:5012:-354.839,0,-480.061	0/1:100:45,55:45:1612:55:1965:-147.02,0,-115.267	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:147:0,147:0:0:147:5284:-475.693,-44.2514,0	1/1:130:0,130:0:0:130:4656:-419.202,-39.1339,0	0/1:170:111,59:111:3961:59:2109:-138.903,0,-305.505	1/1:119:0,119:0:0:119:4268:-384.297,-35.8226,0	0/1:146:77,68:77:2748:68:2444:-176.205,0,-203.554	1/1:185:0,185:0:0:185:6621:-595.968,-55.6906,0	0/1:16:12,4:12:432:4:140:-8.1281,0,-34.4047	0/1:168:103,65:103:3688:65:2313:-157.856,0,-281.55	0/1:119:62,56:62:2228:56:2012:-145.619,0,-165.05	0/1:6:1,5:1:36:5:165:-13.3674,0,-1.79209	1/1:148:3,145:3:108:145:5188:-456.985,-34.4773,0	0/1:115:68,47:68:2409:47:1688:-117.588,0,-182.447	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	0/1:22:17,5:17:608:5:180:-9.9294,0,-48.4294	1/1:137:0,137:0:0:137:4893:-440.521,-41.2411,0	0/1:143:66,77:66:2376:77:2764:-205.954,0,-171.05	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:163:72,91:72:2592:91:3256:-244.087,0,-184.46	1/1:181:1,180:1:36:180:6445:-576.536,-50.8882,0	1/1:115:0,115:0:0:115:4043:-364.018,-34.6185,0	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	0/1:281:171,110:171:6140:110:3944:-270.562,0,-468.108	1/1:260:3,257:3:108:257:9173:-815.469,-68.1926,0	0/1:90:45,45:45:1612:45:1616:-118.637,0,-118.277	1/1:111:0,111:0:0:111:3949:-355.532,-33.4143,0	1/1:59:1,58:1:36:58:2084:-184.232,-14.1625,0	1/1:51:0,51:0:0:51:1832:-165.143,-15.3525,0	0/1:180:111,69:111:3968:69:2431:-164.848,0,-303.126	1/1:137:0,137:0:0:137:4911:-442.136,-41.2411,0	1/1:276:2,274:2:68:274:9695:-866.045,-76.6266,0	1/1:184:1,183:1:21:183:6566:-588.919,-53.2896,0	1/1:139:0,139:0:0:139:4977:-448.059,-41.8432,0	1/1:77:2,75:2:72:75:2688:-235.328,-16.3426,0	0/1:50:27,23:27:964:23:809:-58.0768,0,-72.0253	0/1:125:75,50:75:2672:50:1796:-124.294,0,-203.097	1/1:135:0,135:0:0:135:4784:-430.718,-40.6391,0	0/1:285:146,139:146:5232:139:4992:-363.632,0,-385.224	1/1:80:1,79:1:36:79:2806:-249.179,-20.4841,0	1/1:98:0,97:0:0:97:3490:-313.95,-29.1999,0	1/1:75:1,74:1:36:74:2652:-235.328,-18.979,0	0/1:173:95,78:95:3408:78:2785:-198.811,0,-254.856	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	0/1:98:54,44:54:1923:44:1580:-112.991,0,-143.845	1/1:113:0,113:0:0:113:4045:-364.236,-34.0164,0	0/1:93:48,45:48:1712:45:1601:-116.382,0,-126.37	0/1:214:98,116:98:3520:116:4164:-310.521,0,-252.588	0/1:121:83,38:83:2968:38:1364:-86.6361,0,-230.929	1/1:77:0,77:0:0:77:2762:-248.821,-23.1793,0	1/1:151:0,151:0:0:151:5416:-487.569,-45.4555,0
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chr10	817318	.	G	A	41574.3	PASS	AB=0.533274;ABP=45.9284;AC=53;AF=0.281915;AN=188;AO=2401;CIGAR=1X;DP=8126;DPB=8126;DPRA=1.08212;EPP=5190.69;EPPR=12036;GTI=1;LEN=1;MEANALT=1.01724;MQM=59.9963;MQMR=60;NS=94;NUMALT=1;ODDS=4.82601;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86017;QR=204963;RO=5720;RPL=2399;RPP=5199.36;RPPR=12070.3;RPR=2;RUN=1;SAF=1;SAP=5208.03;SAR=2400;SRF=4;SRP=12389.1;SRR=5716;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:27,22:27:964:22:784:-56.1334,0,-72.3264	0/0:88:87,0:87:3104:0:0:0,-26.1896,-279.228	0/1:369:218,151:218:7792:151:5424:-377.207,0,-590.232	0/1:164:68,96:68:2440:96:3433:-259.814,0,-170.486	0/1:57:26,31:26:936:31:1108:-82.8723,0,-67.4008	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	0/1:96:40,56:40:1440:56:2004:-151.735,0,-100.999	0/1:138:59,79:59:2116:79:2828:-213.209,0,-149.167	0/1:90:45,45:45:1604:45:1600:-117.197,0,-117.557	0/1:84:41,43:41:1472:43:1521:-111.895,0,-107.49	0/1:64:33,31:33:1188:31:1108:-80.7651,0,-87.9627	0/1:98:39,59:39:1400:59:2116:-161.208,0,-96.7982	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:43:23,20:23:824:20:720:-52.1845,0,-61.539	0/1:37:14,23:14:500:23:824:-63.3452,0,-34.1981	0/1:47:27,20:27:972:20:709:-49.9863,0,-73.6495	0/1:139:47,92:47:1692:92:3312:-256.454,0,-110.724	0/1:116:46,70:46:1652:70:2504:-190.693,0,-114.049	0/1:53:18,35:18:644:35:1248:-96.6703,0,-42.336	0/1:63:25,38:25:892:38:1356:-103.376,0,-61.6348	0/1:38:11,27:11:396:27:957:-75.0047,0,-24.5436	0/1:83:44,39:44:1572:39:1400:-101.314,0,-116.786	0/0:135:135,0:135:4852:0:0:0,-40.639,-436.832	0/0:310:309,1:309:11068:1:36:0,-89.721,-992.413	0/1:49:26,23:26:932:23:828:-60.0936,0,-69.4484	0/1:239:120,119:120:4300:119:4264:-311.992,0,-315.23	0/1:87:43,44:43:1548:44:1580:-116.302,0,-113.423	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.893	0/0:28:27,0:27:972:0:0:0,-8.12781,-87.4381	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:153:152,0:152:5456:0:0:0,-45.7566,-490.956	0/1:70:41,29:41:1468:29:1036:-72.4818,0,-111.344	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:155:71,84:71:2544:84:2993:-222.941,0,-182.551	0/1:51:27,24:27:972:24:864:-62.73,0,-72.4454	0/1:203:117,86:117:4153:86:3088:-217.038,0,-312.846	0/1:67:28,39:28:1008:39:1400:-106.13,0,-70.8673	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:153:153,0:153:5496:0:0:0,-46.0576,-494.764	0/1:123:49,73:49:1760:73:2612:-198.243,0,-121.598	0/0:41:40,1:40:1428:1:36:0,-8.74395,-125.219	0/1:112:49,63:49:1760:63:2264:-170.307,0,-124.969	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:101:46,55:46:1652:55:1976:-147.711,0,-118.564	0/1:65:30,35:30:1080:35:1260:-94.1385,0,-77.9463	1/1:12:1,11:1:36:11:388:-31.6591,-0.0140851,0	0/0:164:163,0:163:5832:0:0:0,-49.0679,-524.633	0/1:31:16,15:16:576:15:532:-38.8812,0,-42.8431	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:93:41,52:41:1460:52:1868:-140.403,0,-103.7	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:109:40,69:40:1428:69:2476:-190.281,0,-96.0053	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.472	0/0:56:55,1:55:1960:1:36:0,-13.2594,-173.077	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:115:50,65:50:1796:65:2324:-174.802,0,-127.304	0/0:129:126,3:126:4524:3:108:0,-28.7577,-397.251	0/1:59:35,24:35:1239:24:860:-59.9611,0,-94.0529	0/0:64:62,2:62:2216:2:72:0,-12.4292,-192.868	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:68:34,34:34:1212:34:1216:-89.2765,0,-88.9163	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.273	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:202:202,0:202:7248:0:0:0,-60.8081,-652.371	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:91:91,0:91:3276:0:0:0,-27.3937,-295.059	0/1:20:11,9:11:392:9:324:-23.4853,0,-29.5995	0/1:111:52,59:52:1868:59:2120:-157.654,0,-134.985	0/0:183:183,0:183:6536:0:0:0,-55.0885,-588.325	0/1:149:51,98:51:1832:98:3508:-271.077,0,-120.307	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:136:64,72:64:2300:72:2592:-192.588,0,-166.321	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:60:30,30:30:1072:30:1072:-78.7307,0,-78.7307	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/1:65:29,36:29:1044:36:1296:-97.377,0,-74.7079	0/1:102:47,55:47:1688:55:1972:-147.05,0,-121.502	0/1:92:25,67:25:900:67:2408:-189.281,0,-53.6263	0/0:94:94,0:94:3367:0:0:0,-28.2968,-303.245	0/0:89:87,2:87:3116:2:72:0,-19.9549,-273.83
chr10	817546	.	A	G	37876.4	PASS	AB=0.524054;ABP=24.5303;AC=51;AF=0.271277;AN=188;AO=2248;CIGAR=1X;DP=7846;DPB=7846;DPRA=1.1567;EPP=4884.48;EPPR=12067.9;GTI=0;LEN=1;MEANALT=1.01852;MQM=59.9973;MQMR=59.9877;NS=94;NUMALT=1;ODDS=0.720727;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79747;QR=199516;RO=5596;RPL=2248;RPP=4884.48;RPPR=12059.2;RPR=0;RUN=1;SAF=2248;SAP=4884.48;SAR=0;SRF=5595;SRP=12145.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:9,10:9:309:10:351:-26.2071,0,-22.4211	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/1:161:100,61:100:3561:61:2180:-148,0,-272.232	0/1:166:72,93:72:2548:93:3324:-249.349,0,-179.543	0/1:33:10,23:10:356:23:811:-63.376,0,-22.4473	0/1:25:17,8:17:591:8:288:-18.7417,0,-45.9895	0/1:48:17,31:17:612:31:1101:-84.9489,0,-40.964	0/1:94:30,64:30:1076:64:2257:-175.093,0,-68.856	0/1:97:47,50:47:1680:50:1781:-131.371,0,-122.287	0/1:68:36,32:36:1292:32:1138:-82.2588,0,-96.0853	0/1:117:51,66:51:1820:66:2364:-177.798,0,-128.861	0/1:103:48,55:48:1711:55:1944:-144.227,0,-123.269	0/0:77:76,1:76:2710:1:36:0,-19.581,-240.545	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/1:34:14,20:14:504:20:703:-53.3585,0,-35.4631	0/1:51:34,17:34:1216:17:612:-40.0609,0,-94.394	0/1:68:40,28:40:1436:28:1000:-69.8453,0,-108.639	0/1:92:49,43:49:1748:43:1531:-110.388,0,-129.909	0/1:105:50,55:50:1788:55:1931:-142.456,0,-129.594	0/1:32:5,27:5:180:27:968:-77.8044,0,-6.9191	0/1:66:30,36:30:1072:36:1273:-95.0029,0,-76.9245	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:56:28,28:28:995:28:987:-72.2854,0,-73.0063	0/0:159:159,0:159:5631:0:0:0,-47.8638,-506.91	0/0:286:285,1:285:10135:1:21:0,-83.9946,-909.986	0/1:26:8,18:8:280:18:614:-47.7527,0,-17.7125	0/1:168:82,86:82:2923:86:3071:-226.045,0,-212.732	0/1:105:56,49:56:1993:49:1736:-124.915,0,-148.034	0/0:79:79,0:79:2805:0:0:0,-23.7814,-252.689	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:172:172,0:172:6171:0:0:0,-51.7772,-555.486	0/1:101:52,49:52:1868:49:1710:-123.772,0,-137.995	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:94:54,40:54:1913:40:1436:-101.241,0,-144.149	0/1:58:21,37:21:747:37:1328:-102.362,0,-50.0946	0/1:115:68,47:68:2425:47:1654:-114.528,0,-183.886	0/1:56:22,34:22:792:34:1216:-92.8889,0,-54.748	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/0:114:114,0:114:4075:0:0:0,-34.3174,-366.934	0/0:102:102,0:102:3647:0:0:0,-30.7051,-328.364	0/1:162:90,72:90:3211:72:2553:-181.253,0,-240.446	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.939	0/1:111:50,61:50:1787:61:2173:-162.42,0,-127.698	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:16:5,11:5:180:11:384:-30.0782,0,-11.7356	0/1:137:82,55:82:2931:55:1959:-135.344,0,-222.783	0/1:86:34,52:34:1216:52:1857:-141.52,0,-83.858	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/0:134:134,0:134:4765:0:0:0,-40.338,-429.009	0/1:10:6,4:6:216:4:131:-9.10317,0,-16.7802	0/1:13:3,10:3:108:10:345:-27.4674,0,-6.16178	0/1:14:9,5:9:324:5:171:-11.511,0,-25.2914	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.792	0/1:141:58,83:58:2067:83:2925:-221.039,0,-143.855	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/1:146:61,85:61:2159:85:3031:-229.07,0,-150.618	0/0:138:136,2:136:4888:2:72:0,-34.7054,-433.233	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.864	0/1:132:58,74:58:2055:74:2635:-197.661,0,-145.485	0/0:125:125,0:125:4471:0:0:0,-37.6287,-402.559	0/1:87:34,53:34:1211:53:1881:-143.377,0,-83.1059	0/0:39:39,0:39:1380:0:0:0,-11.7402,-124.499	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776	0/0:34:33,0:33:1184:0:0:0,-9.93399,-106.509	0/1:159:73,86:73:2616:86:3031:-225.157,0,-187.824	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.723	0/0:135:135,0:135:4787:0:0:0,-40.639,-430.988	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.029	0/0:106:106,0:106:3773:0:0:0,-31.9092,-339.769	0/0:85:85,0:85:3031:0:0:0,-25.5875,-273.02	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:80:40,40:40:1432:40:1427:-104.644,0,-105.095	0/0:103:103,0:103:3649:0:0:0,-31.0061,-328.616	0/1:148:74,74:74:2611:74:2623:-191.765,0,-190.684	0/0:54:54,0:54:1912:0:0:0,-16.2556,-172.355	0/0:102:102,0:102:3651:0:0:0,-30.7051,-328.794	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:134:63,71:63:2241:71:2531:-187.703,0,-161.614	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:67:35,32:35:1260:32:1113:-80.3061,0,-93.5365	0/0:83:83,0:83:2956:0:0:0,-24.9855,-266.275	0/1:127:61,66:61:2184:66:2340:-172.627,0,-158.595	0/1:219:109,110:109:3873:110:3890:-284.37,0,-282.84	0/1:86:17,69:17:608:69:2449:-194.775,0,-29.1634	0/0:112:112,0:112:3948:0:0:0,-33.7154,-355.51	0/0:113:113,0:113:4027:0:0:0,-34.0164,-362.62
chr10	889566	.	A	T	32084.9	PASS	AB=0.562557;ABP=115.214;AC=51;AF=0.271277;AN=188;AO=1859;CIGAR=1X;DP=5737;DPB=5737;DPRA=1.2964;EPP=4039.78;EPPR=8415.29;GTI=2;LEN=1;MEANALT=1.03774;MQM=56.1576;MQMR=58.9608;NS=94;NUMALT=1;ODDS=0.175358;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66372;QR=138666;RO=3874;RPL=0;RPP=4039.78;RPPR=8415.29;RPR=1859;RUN=1;SAF=1859;SAP=4039.78;SAR=0;SRF=3874;SRP=8415.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:18,15:18:640:15:528:-37.9018,0,-47.9173	0/0:56:56,0:56:2008:0:0:0,-16.8577,-179.557	0/1:75:36,39:36:1296:39:1391:-102.792,0,-94.364	0/1:134:65,69:65:2336:69:2472:-182.031,0,-169.724	0/1:70:47,23:47:1684:23:820:-53.0167,0,-130.772	0/1:45:23,22:23:824:22:792:-57.9679,0,-60.933	0/1:76:31,45:31:1116:45:1608:-122.006,0,-77.7817	0/1:90:44,46:44:1571:46:1621:-118.938,0,-114.281	0/1:36:17,19:17:608:19:680:-49.9769,0,-44.2137	0/1:76:35,41:35:1241:41:1460:-108.067,0,-89.1079	0/1:34:21,13:21:752:13:468:-32.112,0,-57.7607	0/1:46:25,21:25:900:21:739:-52.8697,0,-67.4687	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.227	0/0:48:48,0:48:1708:0:0:0,-14.4494,-152.204	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.166	0/0:39:39,0:39:1400:0:0:0,-11.7402,-125.736	0/1:35:13,22:13:464:22:783:-60.2319,0,-31.1879	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.46	0/1:20:8,12:8:288:12:420:-32.1044,0,-20.2459	0/1:105:50,55:50:1751:55:1956:-143.674,0,-125.659	0/1:74:46,28:46:1652:28:1004:-68.2454,0,-126.012	0/1:99:17,82:17:608:82:2908:-231.971,0,-25.2491	0/1:50:34,16:34:1216:16:572:-36.6879,0,-94.0661	0/1:53:22,31:22:792:31:1112:-84.3231,0,-55.6464	0/1:57:24,33:24:864:33:1176:-88.8293,0,-60.9239	0/0:184:183,1:183:6545:1:36:0,-51.7922,-583.38	0/0:128:126,0:126:4506:0:0:0,-37.9298,-403.158	0/1:21:14,7:14:504:7:252:-16.6872,0,-39.3734	0/1:225:83,142:83:2984:142:5086:-389.564,0,-200.783	0/1:65:32,33:32:1152:33:1184:-87.1663,0,-84.4155	0/0:67:67,0:67:2370:0:0:0,-20.169,-213.395	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0274	0/1:7:3,4:3:108:4:144:-11.2001,0,-7.96796	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9818	0/0:112:112,0:112:4005:0:0:0,-33.7154,-359.403	0/1:125:50,74:50:1784:74:2660:-199.486,0,-123.139	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.999	0/1:3:2,1:2:72:1:36:-2.69347,0,-5.93201	0/1:92:35,57:35:1252:57:2036:-155.283,0,-84.8176	0/1:17:8,9:8:284:9:324:-24.3743,0,-20.7824	0/1:122:60,62:60:2151:62:2224:-163.515,0,-157.055	0/1:44:22,22:22:792:22:788:-57.8305,0,-58.2901	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.9198	0/0:66:66,0:66:2360:0:0:0,-19.868,-211.546	0/0:92:92,0:92:3292:0:0:0,-27.6948,-293.689	0/1:177:72,105:72:2584:105:3735:-282.138,0,-179.498	0/0:58:58,0:58:2068:0:0:0,-17.4597,-185.749	0/1:113:43,70:43:1540:70:2505:-191.446,0,-104.822	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.404	0/1:6:1,5:1:36:5:180:-14.7346,0,-1.79209	0/1:98:27,71:27:972:71:2544:-199.515,0,-57.4089	0/1:21:5,16:5:176:16:572:-45.4206,0,-9.861	0/1:10:3,7:3:108:7:248:-19.5783,0,-7.06487	0/0:77:77,0:77:2744:0:0:0,-23.1793,-246.954	0/1:25:8,17:8:288:17:612:-47.7224,0,-18.7401	0/1:3:2,1:2:72:1:36:-2.69418,0,-5.93268	0/1:7:2,5:2:72:5:176:-14.0737,0,-4.72951	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.222	0/1:93:42,51:42:1500:51:1828:-136.598,0,-106.113	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:138:46,92:46:1640:92:3272:-252.81,0,-106.231	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.673	0/0:55:55,0:55:1950:0:0:0,-16.5566,-174.328	0/0:80:80,0:80:2876:0:0:0,-24.0824,-258.933	0/1:129:63,66:63:2241:66:2340:-171.429,0,-163.03	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.605	0/1:16:13,3:13:468:3:108:-5.2539,0,-37.6432	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.279	0/0:58:58,0:58:2069:0:0:0,-17.4597,-185.927	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.214	0/1:82:43,39:43:1529:39:1396:-101.221,0,-110.45	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2439	0/0:85:85,0:85:3052:0:0:0,-25.5875,-273.796	0/0:108:107,1:107:3840:1:36:0,-29.0085,-338.311	0/0:110:110,0:110:3948:0:0:0,-33.1133,-354.289	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.217	0/1:4:2,2:2:72:2:72:-5.63069,0,-5.6326	0/1:71:28,43:28:1004:43:1533:-116.744,0,-69.2531	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.415	0/1:131:50,80:50:1792:80:2860:-217.251,0,-121.73	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.631	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.42	0/0:59:59,0:59:2120:0:0:0,-17.7608,-190.365	0/1:78:32,46:32:1152:46:1656:-125.438,0,-79.8793	0/0:36:36,0:36:1292:0:0:0,-10.8371,-115.953	0/1:53:23,30:23:824:30:1055:-79.0716,0,-58.4966	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.175	0/1:35:14,21:14:504:21:748:-57.0011,0,-35.162	0/1:49:22,27:22:792:27:972:-72.7709,0,-56.8086	0/1:33:16,17:16:576:17:608:-45.0886,0,-42.2371	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.1199	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.577
chr10	889766	.	T	C	33386	PASS	AB=0.50473;ABP=3.7704;AC=49;AF=0.263441;AN=186;AO=1976;CIGAR=1X;DP=7379;DPB=7379;DPRA=1.06603;EPP=4293.84;EPPR=11670.4;GTI=0;LEN=1;MEANALT=1.11765;MQM=59.9135;MQMR=59.9892;NS=93;NUMALT=1;ODDS=5.00105;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70707;QR=192932;RO=5393;RPL=1976;RPP=4293.84;RPPR=11670.4;RPR=0;RUN=1;SAF=0;SAP=4293.84;SAR=1976;SRF=0;SRP=11713.8;SRR=5393;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:22,14:22:788:14:504:-34.861,0,-60.4077	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/1:85:47,38:47:1684:38:1364:-97.4723,0,-126.259	0/1:104:52,52:52:1853:52:1868:-137.088,0,-135.741	0/1:51:30,21:30:1080:21:756:-53.0147,0,-82.1607	0/1:73:32,41:32:1148:41:1468:-110.441,0,-81.6546	0/1:116:76,40:76:2720:40:1432:-94.2581,0,-210.124	0/1:143:53,89:53:1908:89:3169:-242.327,0,-128.891	0/1:110:48,62:48:1716:62:2207:-165.781,0,-121.612	0/1:124:54,70:54:1936:70:2509:-188.662,0,-137.189	0/1:49:27,22:27:972:22:780:-55.7726,0,-73.0474	0/1:62:30,32:30:1076:32:1152:-85.3263,0,-78.489	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:56:24,32:24:860:32:1144:-86.4118,0,-60.8642	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:30:7,23:7:248:23:824:-65.4524,0,-13.6333	0/1:173:100,73:100:3585:73:2616:-183.565,0,-270.776	0/1:116:61,55:61:2192:55:1976:-143.194,0,-162.626	0/1:46:17,29:17:612:29:1021:-78.3529,0,-41.5661	0/1:84:44,40:44:1572:40:1431:-103.8,0,-116.485	0/1:120:53,64:53:1896:64:2291:-170.869,0,-135.338	0/1:34:19,15:19:684:15:536:-38.3398,0,-51.6553	0/0:270:270,0:270:9672:0:0:0,-81.2781,-870.43	0/0:164:163,1:163:5817:1:36:0,-45.7706,-520.045	0/1:42:16,26:16:572:26:936:-71.9162,0,-39.1702	0/1:108:59,48:59:2097:48:1724:-122.875,0,-156.428	0/1:79:54,25:54:1924:25:891:-56.7274,0,-149.656	0/0:94:94,0:94:3357:0:0:0,-28.2968,-302.345	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:162:162,0:162:5790:0:0:0,-48.7669,-521.212	0/1:181:86,95:86:3084:95:3408:-252.43,0,-223.301	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.493	.:.:.:.:.:.:.:.	0/1:114:70,44:70:2497:44:1580:-108.174,0,-190.664	0/1:27:9,18:9:324:18:648:-50.5241,0,-21.378	0/1:128:52,75:52:1852:75:2679:-202.759,0,-127.742	0/1:62:27,35:27:964:35:1260:-95.0416,0,-68.413	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:114:114,0:114:4069:0:0:0,-34.3174,-366.396	0/0:114:114,0:114:4088:0:0:0,-34.3174,-368.104	0/1:115:62,52:62:2228:52:1860:-133.002,0,-166.107	0/0:98:97,0:97:3458:0:0:0,-29.1999,-311.07	0/1:56:22,34:22:792:34:1220:-93.2491,0,-54.748	0/0:200:199,0:199:7087:0:0:0,-59.905,-637.529	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:107:61,46:61:2176:46:1639:-115.586,0,-163.896	0/1:18:11,7:11:381:7:252:-17.6104,0,-29.2021	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/1:29:17,12:17:593:12:432:-30.4913,0,-44.9648	0/1:12:4,8:4:125:8:288:-22.655,0,-7.94626	0/1:36:29,7:29:1036:7:252:-12.1919,0,-82.7168	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:104:39,65:39:1400:65:2336:-179.192,0,-94.9921	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:166:88,78:88:3147:78:2800:-202.268,0,-233.484	0/0:146:146,0:146:5217:0:0:0,-43.9504,-469.668	0/0:85:85,0:85:3033:0:0:0,-25.5875,-273.199	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:125:61,64:61:2184:64:2245:-164.682,0,-159.197	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.541	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.941	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:104:53,51:53:1904:51:1836:-134.213,0,-140.331	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:151:151,0:151:5420:0:0:0,-45.4555,-487.928	0/0:147:147,0:147:5276:0:0:0,-44.2514,-474.974	0/0:107:107,0:107:3806:0:0:0,-32.2102,-342.736	0/0:88:87,1:87:3113:1:36:0,-22.8924,-276.797	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:77:42,35:42:1485:35:1241:-88.8132,0,-110.763	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:171:86,85:86:3088:85:3039:-222.262,0,-226.671	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:48:48,0:48:1708:0:0:0,-14.4494,-154.006	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:123:44,78:44:1580:78:2787:-213.984,0,-105.406	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:88:43,45:43:1548:45:1603:-118.068,0,-113.122	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:45:20,25:20:716:25:900:-67.7747,0,-51.2214	0/1:62:34,28:34:1220:28:1008:-71.6404,0,-91.4429	0/1:64:15,49:15:536:49:1751:-138.607,0,-29.3089	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.537	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613
chr10	999857	.	A	G	166504	PASS	AB=0.471255;ABP=46.7037;AC=137;AF=0.744565;AN=184;AO=8061;CIGAR=1X;DP=11296;DPB=11296;DPRA=0;EPP=17507.2;EPPR=7010.35;GTI=3;LEN=1;MEANALT=1.08696;MQM=59.9468;MQMR=59.9839;NS=92;NUMALT=1;ODDS=1.26728;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287247;QR=115465;RO=3227;RPL=0;RPP=17507.2;RPPR=7010.35;RPR=8061;RUN=1;SAF=8061;SAP=17507.2;SAR=0;SRF=3227;SRP=7010.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:36,20:36:1292:20:712:-47.549,0,-99.7261	1/1:194:0,194:0:0:194:6907:-621.699,-58.3998,0	0/1:144:70,74:70:2505:74:2611:-191.886,0,-182.352	0/1:295:159,136:159:5663:136:4807:-343.983,0,-420.984	0/1:104:52,51:52:1864:51:1828:-133.435,0,-136.674	0/1:61:38,23:38:1364:23:816:-55.3989,0,-104.698	0/1:248:143,105:143:5105:105:3776:-265.362,0,-384.937	0/1:182:90,92:90:3205:92:3265:-239.279,0,-233.885	0/1:106:65,41:65:2328:41:1460:-99.7868,0,-177.871	0/1:142:84,58:84:3016:58:2061:-143.013,0,-228.924	0/1:53:35,18:35:1256:18:644:-42.336,0,-97.3907	0/1:94:55,39:55:1980:39:1379:-96.1112,0,-150.178	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	1/1:89:1,88:1:36:88:3139:-279.138,-23.1934,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:82:37,45:37:1332:45:1612:-120.686,0,-95.4979	1/1:80:0,80:0:0:80:2852:-256.919,-24.0824,0	0/1:43:23,20:23:828:20:720:-52.1845,0,-61.8998	0/1:345:192,153:192:6880:153:5450:-386.645,0,-515.412	0/1:204:118,86:118:4194:86:3065:-214.665,0,-316.231	0/1:125:102,23:102:3656:23:820:-36.4938,0,-291.615	0/1:136:61,75:61:2169:75:2672:-199.783,0,-154.535	0/1:169:93,76:93:3340:76:2720:-194.169,0,-249.942	0/1:46:22,24:22:784:24:856:-63.5124,0,-57.0365	1/1:365:1,364:1:36:364:12947:-1161.45,-106.278,0	1/1:277:0,277:0:0:277:9857:-887.074,-83.3853,0	0/1:43:19,24:19:684:24:864:-65.1383,0,-48.946	0/1:392:208,184:208:7460:184:6553:-471.851,0,-553.438	0/1:99:41,58:41:1472:58:2062:-156.048,0,-102.974	1/1:135:0,135:0:0:135:4820:-433.87,-40.6391,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:231:3,228:3:108:228:8099:-718.855,-59.4628,0	0/1:192:91,101:91:3257:101:3624:-268.567,0,-235.551	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	.:.:.:.:.:.:.:.	0/1:136:61,75:61:2169:75:2700:-202.303,0,-154.49	0/1:25:14,11:14:504:11:388:-27.7316,0,-38.1723	0/1:209:107,102:107:3852:102:3637:-264.619,0,-283.958	0/1:102:51,51:51:1832:51:1832:-134.456,0,-134.456	1/1:63:0,63:0:0:63:2240:-201.863,-18.9649,0	1/1:124:0,124:0:0:124:4415:-397.522,-37.3277,0	1/1:129:1,127:1:36:127:4552:-406.226,-35.2934,0	0/1:223:99,124:99:3510:124:4418:-330.656,0,-248.935	1/1:142:0,141:0:0:141:5020:-451.59,-42.4452,0	1/1:227:1,226:1:36:226:8101:-725.498,-64.7355,0	1/1:196:1,194:1:36:194:6931:-620.258,-55.4624,0	.:.:.:.:.:.:.:.	0/1:141:64,77:64:2292:77:2745:-204.843,0,-164.096	0/1:41:26,15:26:932:15:536:-36.2326,0,-71.8566	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:129:0,129:0:0:129:4600:-414.163,-38.8329,0	0/1:76:35,41:35:1241:41:1468:-109.538,0,-88.9565	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	1/1:63:0,63:0:0:63:2218:-199.882,-18.9649,0	0/1:110:44,66:44:1580:66:2363:-179.815,0,-109.378	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:227:100,126:100:3592:126:4493:-336.145,0,-255.093	1/1:196:0,196:0:0:196:6973:-626.861,-59.0019,0	1/1:77:0,77:0:0:77:2738:-246.662,-23.1793,0	1/1:134:0,134:0:0:134:4770:-429.456,-40.338,0	0/1:234:128,106:128:4543:106:3768:-268.875,0,-338.594	1/1:181:2,179:2:72:179:6373:-566.826,-47.6497,0	1/1:23:0,23:0:0:23:793:-71.6843,-6.92369,0	1/1:131:0,131:0:0:131:4657:-419.288,-39.4349,0	1/1:99:0,99:0:0:99:3514:-316.47,-29.802,0	1/1:35:0,35:0:0:35:1239:-111.81,-10.5361,0	0/1:68:44,24:44:1576:24:864:-57.6125,0,-121.662	1/1:104:0,104:0:0:104:3705:-333.652,-31.3071,0	1/1:186:0,186:0:0:186:6642:-597.828,-55.9916,0	1/1:238:0,237:0:0:237:8420:-757.445,-71.3441,0	1/1:164:0,164:0:0:164:5815:-522.522,-49.3689,0	1/1:145:1,144:1:36:144:5096:-455.169,-40.0511,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:200:106,93:106:3808:93:3315:-238.303,0,-282.652	1/1:142:0,142:0:0:142:5045:-454.183,-42.7463,0	0/1:286:152,134:152:5426:134:4770:-343.36,0,-402.373	1/1:117:0,117:0:0:117:4206:-378.717,-35.2205,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:116:51,65:51:1832:65:2315:-173.691,0,-130.241	0/1:202:111,91:111:3992:91:3245:-231.462,0,-298.66	1/1:46:0,46:0:0:46:1647:-148.518,-13.8474,0	0/1:81:39,42:39:1400:42:1504:-111.271,0,-101.916	1/1:67:0,67:0:0:67:2383:-214.728,-20.169,0	0/1:44:18,26:18:633:26:936:-71.3141,0,-44.0497	0/1:69:42,27:42:1512:27:960:-65.9452,0,-115.604	0/1:89:66,23:66:2349:23:807:-46.1575,0,-184.876	1/1:215:0,214:0:0:214:7611:-684.442,-64.4204,0	1/1:130:0,130:0:0:130:4645:-418.211,-39.1339,0
chr10	999893	.	C	T	433411	PASS	AB=0.5;ABP=3.0103;AC=137;AF=0.736559;AN=186;AO=16151;CIGAR=1X;DP=21871;DPB=21871;DPRA=0;EPP=35057.1;EPPR=12417.3;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.9589;MQMR=59.9927;NS=93;NUMALT=1;ODDS=5.84222;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=575343;QR=202218;RO=5717;RPL=8167;RPP=7.51283;RPPR=171.991;RPR=7984;RUN=1;SAF=8167;SAP=7.51283;SAR=7984;SRF=3192;SRP=171.991;SRR=2525;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:91:50,41:50:1760:41:1464:-104.662,0,-131.287	1/1:334:0,333:0:0:333:11893:-1069.87,-100.243,0	0/1:269:132,137:132:4708:137:4885:-358.826,0,-342.905	0/1:454:252,202:252:8891:202:7239:-514.886,0,-663.517	0/1:168:87,81:87:3079:81:2891:-209.853,0,-226.765	0/1:122:70,52:70:2459:52:1849:-129.964,0,-184.838	0/1:424:214,210:214:7586:210:7473:-544.96,0,-555.148	0/1:305:147,157:147:5125:157:5603:-412.52,0,-369.523	0/1:188:99,89:99:3480:89:3138:-226.051,0,-256.818	0/1:267:125,142:125:4395:142:5066:-374.774,0,-315.353	0/1:178:103,75:103:3646:75:2688:-188.581,0,-274.764	0/1:209:120,89:120:4218:89:3164:-222.056,0,-316.889	1/1:206:0,206:0:0:206:7325:-659.302,-62.0122,0	1/1:185:0,185:0:0:185:6573:-591.654,-55.6906,0	1/1:198:1,197:1:36:197:7004:-626.827,-56.0057,0	1/1:127:0,127:0:0:127:4548:-409.478,-38.2308,0	0/1:191:86,105:86:3055:105:3764:-281.462,0,-217.684	1/1:159:2,157:2:72:157:5572:-494.771,-41.027,0	0/1:119:62,57:62:2174:57:2027:-146.879,0,-160.101	0/1:528:265,263:265:9373:263:9412:-688.096,0,-684.597	0/1:351:197,154:197:6925:154:5516:-390.833,0,-517.662	0/1:211:152,59:152:5408:59:2104:-126.111,0,-423.334	0/1:232:101,131:101:3606:131:4668:-350.434,0,-254.907	0/1:282:120,162:120:4269:162:5779:-435.336,0,-299.499	0/1:147:74,73:74:2612:73:2589:-189.003,0,-191.076	1/1:691:3,688:3:108:688:24491:-2193.45,-197.937,0	1/1:532:0,532:0:0:532:18987:-1708.39,-160.148,0	0/1:105:46,59:46:1640:59:2101:-157.75,0,-116.281	0/1:692:354,338:354:12566:338:12071:-877.93,0,-922.467	0/1:202:84,118:84:2973:118:4198:-317.195,0,-206.995	1/1:282:0,281:0:0:281:10025:-901.881,-84.5894,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:29:11,18:11:396:18:648:-49.922,0,-27.2529	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:523:2,521:2:72:521:18598:-1666.37,-150.602,0	0/1:358:147,211:147:5202:211:7537:-570.602,0,-360.554	1/1:179:0,179:0:0:179:6353:-571.855,-53.8844,0	.:.:.:.:.:.:.:.	0/1:321:138,183:138:4861:183:6524:-490.613,0,-341.009	0/1:77:39,38:39:1392:38:1368:-100.242,0,-102.4	0/1:332:163,169:163:5795:169:6020:-441.963,0,-421.724	0/1:218:109,109:109:3904:109:3888:-284.488,0,-285.929	1/1:160:0,160:0:0:160:5629:-506.736,-48.1648,0	1/1:227:0,227:0:0:227:8073:-726.361,-68.3338,0	1/1:252:3,249:3:108:249:8870:-788.207,-65.7844,0	0/1:423:188,235:188:6612:235:8314:-620.939,0,-467.832	1/1:288:2,286:2:72:286:10117:-903.628,-79.8599,0	1/1:373:1,372:1:36:372:13260:-1189.6,-108.686,0	1/1:393:3,390:3:108:390:13943:-1244.57,-108.23,0	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/1:284:124,160:124:4365:160:5665:-424.472,0,-307.535	0/1:90:45,45:45:1616:45:1608:-117.917,0,-118.637	0/1:9:2,7:2:72:7:237:-18.9498,0,-4.12745	1/1:261:0,261:0:0:261:9267:-833.996,-78.5688,0	0/1:112:43,69:43:1531:69:2480:-189.73,0,-104.296	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:25:16,9:16:576:9:305:-20.2515,0,-44.6492	1/1:155:0,155:0:0:155:5512:-496.208,-46.6597,0	0/1:273:122,151:122:4288:151:5362:-400.533,0,-303.919	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:394:173,221:173:6132:221:7923:-594.485,0,-433.377	1/1:374:0,374:0:0:374:13292:-1195.31,-112.585,0	1/1:172:0,172:0:0:172:6154:-553.953,-51.7772,0	1/1:223:0,223:0:0:223:7904:-711.354,-67.1297,0	0/1:380:185,195:185:6533:195:6933:-509.647,0,-473.666	1/1:313:3,310:3:108:310:11080:-987.016,-84.1472,0	1/1:83:1,82:1:36:82:2927:-260.058,-21.3872,0	1/1:238:0,238:0:0:238:8427:-758.439,-71.6451,0	1/1:224:0,224:0:0:224:7923:-713.069,-67.4307,0	1/1:64:0,64:0:0:64:2280:-205.461,-19.2659,0	0/1:134:73,61:73:2586:61:2188:-156.848,0,-192.651	1/1:205:0,205:0:0:205:7339:-660.558,-61.7112,0	1/1:381:0,381:0:0:381:13510:-1215.54,-114.692,0	1/1:405:0,405:0:0:405:14453:-1300.52,-121.917,0	1/1:285:1,284:1:36:284:10143:-908.636,-82.1953,0	1/1:264:3,261:3:108:261:9280:-824.894,-69.3968,0	0/1:12:6,6:6:212:6:212:-15.8124,0,-15.8124	0/1:301:164,137:164:5837:137:4913:-351.709,0,-434.835	1/1:264:0,264:0:0:264:9412:-846.849,-79.4719,0	0/1:508:266,242:266:9420:242:8576:-618.876,0,-694.846	1/1:270:1,269:1:36:269:9578:-858.377,-77.6798,0	1/1:169:0,169:0:0:169:6033:-543.074,-50.8741,0	0/1:229:115,114:115:4049:114:4094:-299.653,0,-295.664	0/1:368:205,163:205:7249:163:5820:-413.133,0,-541.689	1/1:123:1,122:1:36:122:4360:-388.977,-33.4284,0	0/1:207:99,108:99:3466:108:3844:-283.845,0,-249.841	1/1:181:0,181:0:0:181:6440:-579.69,-54.4864,0	0/1:122:53,69:53:1859:69:2406:-180.068,0,-130.861	0/1:230:112,118:112:3985:118:4173:-306.516,0,-289.602	0/1:191:137,54:137:4833:54:1906:-114.32,0,-377.632	1/1:357:0,357:0:0:357:12748:-1147.01,-107.468,0	1/1:327:1,326:1:27:326:11659:-1046.47,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chr10	999905	.	C	T	131771	PASS	AB=0.506133;ABP=6.71232;AC=50;AF=0.268817;AN=186;AO=5765;CIGAR=1X;DP=21616;DPB=21616;DPRA=1.22657;EPP=12521.5;EPPR=34401.3;GTI=1;LEN=1;MEANALT=1.05;MQM=59.9925;MQMR=59.9719;NS=93;NUMALT=1;ODDS=5.40861;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205292;QR=560108;RO=15845;RPL=3141;RPP=103.689;RPPR=14.2985;RPR=2624;RUN=1;SAF=3141;SAP=103.689;SAR=2624;SRF=8065;SRP=14.1418;SRR=7780;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:92:39,53:39:1392:53:1851:-139.172,0,-97.8843	0/0:328:328,0:328:11594:0:0:0,-98.7378,-1043.34	0/1:275:138,137:138:4917:137:4887:-357.2,0,-359.899	0/1:444:196,248:196:6927:248:8754:-654.184,0,-489.842	0/1:168:82,86:82:2906:86:3036:-222.895,0,-211.203	0/1:119:51,68:51:1798:68:2423:-182.503,0,-126.277	0/1:425:208,217:208:7306:217:7724:-567.259,0,-529.662	0/1:301:151,150:151:5388:150:5306:-387.068,0,-394.432	0/1:190:87,103:87:3043:103:3680:-274.208,0,-216.903	0/1:265:138,127:138:4920:127:4516:-326.835,0,-363.178	0/1:177:72,105:72:2527:105:3737:-283.249,0,-174.398	0/1:205:84,121:84:2958:121:4309:-326.276,0,-204.611	0/0:202:201,0:201:7065:0:0:0,-60.507,-635.711	0/0:177:177,0:177:6215:0:0:0,-53.2823,-559.456	0/0:198:197,1:197:6934:1:36:0,-56.0057,-620.535	0/0:125:125,0:125:4404:0:0:0,-37.6287,-396.527	0/1:191:103,88:103:3655:88:3148:-226.049,0,-271.657	0/0:154:153,1:153:5419:1:36:0,-42.7603,-484.245	0/1:119:57,62:57:1986:62:2206:-162.981,0,-143.188	0/1:529:258,271:258:9159:271:9685:-712.356,0,-664.417	0/1:354:154,200:154:5493:200:7082:-530.882,0,-387.863	0/1:210:57,153:57:2027:153:5454:-427.774,0,-119.485	0/1:231:127,103:127:4510:103:3704:-264.043,0,-336.551	0/1:279:158,121:158:5632:121:4309:-303.999,0,-423.014	0/1:147:73,74:73:2604:74:2652:-194.675,0,-190.347	0/0:673:670,3:670:23683:3:108:0,-192.518,-2120.78	0/0:514:514,0:514:18195:0:0:0,-154.729,-1637.16	0/1:106:57,49:57:2027:49:1732:-124.253,0,-150.793	0/1:692:336,355:336:11875:355:12668:-931.576,0,-860.252	0/1:198:116,82:116:4156:82:2948:-205.949,0,-314.619	0/0:274:274,0:274:9745:0:0:0,-82.4822,-876.848	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:28:18,10:18:640:10:360:-24.3155,0,-49.5005	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:533:531,2:531:18690:2:72:0,-153.612,-1674.79	0/1:356:209,147:209:7378:147:5227:-363.399,0,-556.906	0/0:171:171,0:171:6041:0:0:0,-51.4761,-543.8	.:.:.:.:.:.:.:.	0/1:321:184,137:184:6496:137:4874:-342.138,0,-488.101	0/1:76:37,39:37:1294:39:1392:-102.701,0,-93.8812	0/1:330:169,161:169:5935:161:5768:-419.895,0,-434.922	0/1:216:111,105:111:3914:105:3739:-271.689,0,-287.433	0/0:157:157,0:157:5434:0:0:0,-47.2617,-489.2	0/0:221:221,0:221:7821:0:0:0,-66.5276,-703.919	0/0:248:245,3:245:8672:3:104:0,-64.9526,-770.762	0/1:421:231,190:231:8181:190:6778:-483.36,0,-609.573	0/0:283:281,2:281:9920:2:72:0,-78.3548,-885.912	0/0:368:367,0:367:12988:0:0:0,-110.478,-1168.38	0/0:396:393,3:393:13886:3:108:0,-109.133,-1239.46	1/1:9:1,8:1:27:8:288:-23.5676,-0.00948716,0	0/1:283:160,123:160:5650:123:4407:-311.61,0,-423.435	0/1:93:45,48:45:1604:48:1728:-127.81,0,-116.654	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:254:254,0:254:8948:0:0:0,-76.4616,-805.315	0/1:109:64,45:64:2267:45:1595:-111.027,0,-171.48	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:25:9,16:9:324:16:551:-42.3887,0,-21.9801	0/0:154:154,0:154:5488:0:0:0,-46.3586,-494.037	0/1:268:145,123:145:5132:123:4368:-312.62,0,-381.35	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:391:217,174:217:7660:174:6177:-438.328,0,-571.739	0/0:368:368,0:368:12977:0:0:0,-110.779,-1166.98	0/0:167:167,0:167:5889:0:0:0,-50.272,-530.12	0/0:215:215,0:215:7593:0:0:0,-64.7214,-683.419	0/1:371:188,183:188:6633:183:6510:-474.303,0,-485.372	0/0:306:305,1:305:10796:1:36:0,-88.5169,-967.956	0/0:78:78,0:78:2771:0:0:0,-23.4803,-249.629	0/0:233:233,0:233:8275:0:0:0,-70.14,-744.758	0/0:222:220,1:220:7742:1:36:0,-63.2892,-692.852	0/0:67:67,0:67:2372:0:0:0,-20.169,-213.711	0/1:135:61,74:61:2145:74:2647:-197.837,0,-152.677	0/0:202:202,0:202:7175:0:0:0,-60.8081,-645.81	0/0:359:358,0:358:12572:0:0:0,-107.769,-1130.97	0/0:406:406,0:406:14330:0:0:0,-122.218,-1289.47	0/0:281:281,0:281:9955:0:0:0,-84.5894,-895.619	0/0:253:250,3:250:8842:3:108:0,-66.0854,-785.694	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	0/1:304:140,164:140:4965:164:5872:-437.078,0,-355.487	0/0:254:254,0:254:9002:0:0:0,-76.4616,-809.979	0/1:506:233,273:233:8199:273:9702:-720.812,0,-585.564	0/0:261:261,0:261:9231:0:0:0,-78.5688,-830.768	0/0:163:163,0:163:5748:0:0:0,-49.0679,-517.442	0/1:231:116,115:116:4086:115:4116:-301.087,0,-298.388	0/1:371:163,208:163:5762:208:7416:-555.805,0,-407.016	0/0:120:120,0:120:4256:0:0:0,-36.1236,-383.22	0/1:209:104,105:104:3646:105:3736:-273.526,0,-265.432	0/0:177:177,0:177:6273:0:0:0,-53.2823,-564.67	0/1:121:68,53:68:2420:53:1889:-133.863,0,-181.632	0/1:235:116,119:116:4082:119:4211:-308.429,0,-296.827	0/1:186:50,136:50:1779:136:4838:-379.585,0,-104.401	0/0:356:356,0:356:12637:0:0:0,-107.167,-1137.17	0/0:316:315,1:315:11145:1:36:0,-91.5272,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chr10	1004808	.	A	G	35127	PASS	AB=0.515302;ABP=12.048;AC=49;AF=0.260638;AN=188;AO=2302;CIGAR=1X;DP=8479;DPB=8479;DPRA=1.03198;EPP=5001.74;EPPR=13414;GTI=0;LEN=1;MEANALT=1.01852;MQM=38.907;MQMR=56.9992;NS=94;NUMALT=1;ODDS=1.61911;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82494;QR=221278;RO=6176;RPL=0;RPP=5001.74;RPPR=13414;RPR=2302;RUN=1;SAF=2302;SAP=5001.74;SAR=0;SRF=6176;SRP=13414;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:95:66,29:66:2360:29:1032:-59.3852,0,-184.028	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.418	0/1:135:60,75:60:2160:75:2680:-184.379,0,-153.843	0/1:280:135,145:135:4829:145:5215:-359.522,0,-350.176	0/1:83:48,35:48:1724:35:1256:-80.1377,0,-130.345	0/1:53:27,26:27:968:26:926:-62.6568,0,-70.6649	0/1:92:46,46:46:1652:46:1652:-113.893,0,-120.396	0/1:129:64,65:64:2296:65:2322:-158.486,0,-167.249	0/1:147:75,72:75:2673:72:2580:-175.056,0,-195.446	0/1:59:27,32:27:972:32:1148:-81.5304,0,-69.9746	0/1:45:19,26:19:676:26:932:-64.8171,0,-47.09	0/1:95:46,49:46:1644:49:1737:-119.391,0,-119.572	0/0:95:95,0:95:3397:0:0:0,-28.5978,-304.944	0/0:45:44,1:44:1572:1:36:0,-11.2675,-139.151	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.173	0/0:64:64,0:64:2304:0:0:0,-19.2659,-206.483	0/1:15:8,7:8:284:7:252:-17.1652,0,-21.3853	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.228	0/1:23:12,11:12:432:11:396:-26.9523,0,-32.2927	0/1:118:64,54:64:2292:54:1936:-131.46,0,-170.742	0/1:109:43,66:43:1540:66:2372:-163.04,0,-106.017	0/1:88:13,75:13:453:75:2684:-208.919,0,-14.6041	0/1:112:67,45:67:2400:45:1620:-105.646,0,-180.871	0/1:72:46,26:46:1648:26:936:-57.6439,0,-126.767	0/1:87:51,36:51:1832:36:1288:-81.9752,0,-138.895	0/0:284:284,0:284:10138:0:0:0,-85.4925,-911.427	0/0:216:216,0:216:7748:0:0:0,-65.0225,-696.288	0/1:22:11,11:11:396:11:396:-26.8388,0,-29.2283	0/1:245:87,158:87:3120:158:5663:-417.392,0,-207.04	0/1:116:60,56:60:2156:56:2008:-133.769,0,-159.302	0/0:121:121,0:121:4329:0:0:0,-36.4246,-388.228	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.018	0/1:10:2,8:2:72:8:284:-21.1744,0,-3.82317	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59783	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.9397	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6395	0/0:240:240,0:240:8620:0:0:0,-72.2472,-774.871	0/1:75:22,53:22:773:53:1896:-136.915,0,-47.0916	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.797	0/1:4:3,1:3:108:1:36:-2.14203,0,-8.86626	0/1:136:62,74:62:2228:74:2660:-180.534,0,-159.369	0/1:17:8,9:8:284:9:324:-21.5576,0,-20.7743	0/1:200:115,85:115:4124:85:3052:-195.932,0,-310.677	0/1:63:39,24:39:1400:24:864:-55.8996,0,-107.142	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.281	0/0:167:167,0:167:5988:0:0:0,-50.272,-538.604	0/0:168:168,0:168:5993:0:0:0,-50.573,-538.426	0/1:186:90,96:90:3220:96:3444:-239.857,0,-233.265	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.188	0/0:68:68,0:68:2444:0:0:0,-20.47,-219.173	0/0:77:77,0:77:2772:0:0:0,-23.1793,-249.43	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.304	0/1:125:60,65:60:2156:65:2340:-160.908,0,-156.658	0/1:55:33,22:33:1180:22:792:-52.0617,0,-89.8512	0/1:21:9,12:9:324:12:432:-28.589,0,-23.181	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.376	0/1:57:34,23:34:1205:23:828:-53.9316,0,-91.394	0/1:15:7,8:7:252:8:281:-19.7672,0,-18.5107	0/1:28:11,17:11:396:17:612:-45.5127,0,-27.463	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.324	0/1:103:57,46:57:2044:46:1652:-111.127,0,-153.083	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9568	0/1:175:94,81:94:3364:81:2908:-202.397,0,-250.258	0/0:199:199,0:199:7125:0:0:0,-59.905,-640.505	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.248	0/0:107:106,1:106:3785:1:36:0,-28.7557,-336.488	0/1:161:57,104:57:2029:104:3728:-268.639,0,-134.287	0/0:137:132,5:132:4729:5:172:0,-25.9362,-409.582	0/0:37:37,0:37:1332:0:0:0,-11.1381,-119.536	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.454	0/0:55:55,0:55:1976:0:0:0,-16.5566,-177.958	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.9548	0/1:131:62,68:62:2224:68:2419:-162.446,0,-160.812	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.729	0/0:179:179,0:179:6424:0:0:0,-53.8844,-577.217	0/0:127:126,1:126:4513:1:36:0,-34.7763,-402.173	0/0:137:137,0:137:4905:0:0:0,-41.2411,-441.442	0/0:76:72,4:72:2588:4:129:0,-11.5431,-221.595	0/1:19:10,9:10:360:9:324:-22.0587,0,-27.0211	0/1:91:42,49:42:1504:49:1760:-119.569,0,-107.991	0/0:130:130,0:130:4661:0:0:0,-39.1339,-418.994	0/1:126:61,65:61:2176:65:2309:-160.146,0,-157.901	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.194	0/0:78:78,0:78:2800:0:0:0,-23.4803,-250.821	0/1:48:25,23:25:900:23:828:-57.404,0,-66.7591	0/1:138:73,65:73:2608:65:2340:-160.058,0,-192.735	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3047	0/1:67:33,34:33:1184:34:1216:-83.5386,0,-86.6863	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.62	0/1:28:13,15:13:468:15:536:-36.8381,0,-33.9055	0/1:71:34,37:34:1216:37:1327:-89.4079,0,-88.1972	0/1:74:22,52:22:788:52:1862:-136.281,0,-48.923	0/0:135:135,0:135:4848:0:0:0,-40.639,-435.621	0/0:112:112,0:112:4020:0:0:0,-33.7154,-360.872
chr10	1004814	.	T	A	33517.1	PASS	AB=0.510818;ABP=7.47342;AC=49;AF=0.260638;AN=188;AO=2255;CIGAR=1X;DP=8390;DPB=8390;DPRA=1.09945;EPP=4865;EPPR=13100;GTI=0;LEN=1;MEANALT=1.07143;MQM=38.8914;MQMR=57.0323;NS=94;NUMALT=1;ODDS=1.92839;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79364;QR=219772;RO=6127;RPL=4;RPP=4865;RPPR=13100;RPR=2251;RUN=1;SAF=2255;SAP=4899.68;SAR=0;SRF=6127;SRP=13307.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:97:66,31:66:2364:31:1069:-62.2573,0,-183.775	0/0:56:56,0:56:1997:0:0:0,-16.8577,-179.769	0/1:135:61,74:61:2192:74:2601:-178.256,0,-156.722	0/1:280:138,142:138:4956:142:5004:-343.91,0,-361.591	0/1:81:48,33:48:1724:33:1164:-73.4195,0,-130.947	0/1:51:26,25:26:932:25:867:-58.4389,0,-68.029	0/1:90:45,45:45:1620:45:1596:-110.231,0,-118.895	0/1:125:64,61:64:2295:61:2124:-143.968,0,-168.363	0/1:148:74,74:74:2643:74:2609:-177.903,0,-192.481	0/1:58:26,32:26:932:32:1140:-81.3042,0,-66.6803	0/1:45:19,26:19:684:26:928:-64.5293,0,-47.8095	0/1:92:45,47:45:1620:47:1661:-113.94,0,-118.309	0/0:93:93,0:93:3348:0:0:0,-27.9958,-300.536	0/0:44:42,1:42:1499:1:32:0,-10.982,-132.659	0/0:81:81,0:81:2912:0:0:0,-24.3834,-261.775	0/0:64:64,0:64:2295:0:0:0,-19.2659,-206.292	0/1:15:9,6:9:324:6:216:-14.1163,0,-24.9872	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.3	0/1:23:12,11:12:432:11:392:-26.6933,0,-32.2927	0/1:117:64,52:64:2283:52:1817:-121.915,0,-170.317	0/1:113:44,69:44:1584:69:2410:-166.213,0,-108.768	0/1:85:13,72:13:468:72:2548:-198.071,0,-16.8668	0/1:107:66,41:66:2372:41:1445:-92.3383,0,-180.631	0/1:74:48,26:48:1704:26:913:-55.4261,0,-131.2	0/1:87:50,37:50:1792:37:1312:-84.2681,0,-135.299	0/0:277:276,0:276:9919:0:0:0,-83.0843,-891.613	0/0:211:211,0:211:7584:0:0:0,-63.5173,-681.604	0/1:23:11,12:11:396:12:420:-29.0551,0,-28.9273	0/1:247:88,159:88:3160:159:5618:-413.978,0,-210.077	0/1:116:58,58:58:2088:58:2049:-137.893,0,-153.187	0/0:118:118,0:118:4228:0:0:0,-35.5215,-379.235	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.018	0/1:10:2,8:2:72:8:269:-20.0275,0,-3.82317	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59783	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.539	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8847	0/0:240:237,1:237:8506:1:36:0,-68.4927,-761.35	0/1:74:23,51:23:828:51:1800:-129.757,0,-52.3434	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.147	0/1:4:3,1:3:108:1:32:-1.87661,0,-8.86626	0/1:130:61,69:61:2188:69:2417:-163.444,0,-157.579	0/1:18:8,10:8:288:10:356:-24.0275,0,-20.8364	0/1:197:115,82:115:4120:82:2892:-184.674,0,-311.221	0/1:61:38,23:38:1364:23:816:-52.5289,0,-104.507	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.612	0/0:164:164,0:164:5870:0:0:0,-49.3689,-527.988	0/0:169:169,0:169:6064:0:0:0,-50.8741,-544.377	0/1:184:89,95:89:3192:95:3334:-232.356,0,-230.724	0/0:90:90,0:90:3236:0:0:0,-27.0927,-290.717	0/0:68:67,1:67:2392:1:20:0,-18.4911,-212.953	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.264	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.304	0/1:119:59,60:59:2120:60:2128:-145.372,0,-155.226	0/1:54:33,21:33:1188:21:740:-47.9649,0,-90.8723	0/1:21:9,12:9:324:12:432:-28.589,0,-23.181	0/0:112:111,0:111:3969:0:0:0,-33.4143,-356.882	0/1:55:33,22:33:1188:22:784:-50.8485,0,-90.4695	0/1:16:7,9:7:252:9:317:-22.6206,0,-18.2096	0/1:27:11,16:11:396:16:564:-41.7259,0,-27.764	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.851	0/1:100:57,43:57:2052:43:1524:-101.563,0,-154.703	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5955	0/1:172:94,78:94:3363:78:2719:-187.248,0,-251.07	0/0:198:198,0:198:7107:0:0:0,-59.6039,-638.882	0/0:52:51,0:51:1809:0:0:0,-15.3525,-162.566	0/0:107:106,1:106:3800:1:36:0,-28.7557,-337.885	0/1:159:57,102:57:2048:102:3604:-259.294,0,-136.596	0/0:133:130,3:130:4676:3:104:0,-30.6615,-410.968	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.219	0/0:69:69,0:69:2465:0:0:0,-20.7711,-221.866	0/0:55:55,0:55:1976:0:0:0,-16.5566,-177.958	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.5952	0/1:130:64,66:64:2291:66:2313:-154.639,0,-167.171	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.035	0/0:176:176,0:176:6297:0:0:0,-52.9813,-565.899	0/0:130:129,1:129:4628:1:36:0,-35.6794,-412.363	0/0:139:139,0:139:4984:0:0:0,-41.8432,-448.55	0/0:75:71,4:71:2556:4:140:0,-10.3066,-217.78	0/1:18:9,9:9:316:9:305:-20.9193,0,-23.3576	0/1:88:42,46:42:1508:46:1628:-109.735,0,-109.254	0/0:128:128,0:128:4591:0:0:0,-38.5318,-413.232	0/1:127:61,66:61:2169:66:2330:-161.559,0,-156.897	0/0:59:59,0:59:2120:0:0:0,-17.7608,-190.868	0/0:78:78,0:78:2800:0:0:0,-23.4803,-250.821	0/1:46:24,22:24:864:22:780:-54.0331,0,-64.125	0/1:139:73,66:73:2624:66:2268:-154.815,0,-193.797	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4338	0/1:67:32,35:32:1144:35:1222:-84.354,0,-83.0881	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.339	0/1:26:13,13:13:464:13:468:-31.6577,0,-34.1463	0/1:68:33,34:33:1188:34:1215:-80.9925,0,-86.6643	0/1:72:21,51:21:752:51:1800:-132.108,0,-46.2865	0/0:135:135,0:135:4840:0:0:0,-40.639,-434.535	0/0:112:112,0:112:4016:0:0:0,-33.7154,-360.513
chr10	1004815	.	A	C	130075	PASS	AB=0.480665;ABP=17.4529;AC=139;AF=0.739362;AN=188;AO=6129;CIGAR=1X;DP=8454;DPB=8454;DPRA=0;EPP=12761.9;EPPR=4864.42;GTI=0;LEN=1;MEANALT=1.03191;MQM=56.9838;MQMR=38.9083;NS=94;NUMALT=1;ODDS=0.895905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218733;QR=83122;RO=2322;RPL=64;RPP=12761.9;RPPR=4864.42;RPR=6065;RUN=1;SAF=6129;SAP=13312;SAR=0;SRF=2322;SRP=5045.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:96:30,66:30:1076:66:2351:-182.907,0,-61.6462	1/1:55:0,55:0:0:55:1960:-176.589,-16.5567,0	0/1:134:75,59:75:2692:59:2100:-148.799,0,-185.532	0/1:283:147,136:147:5268:136:4867:-352.692,0,-363.477	0/1:83:35,48:35:1248:48:1728:-130.704,0,-79.6409	0/1:52:25,27:25:896:27:968:-70.8599,0,-59.7068	0/1:92:47,45:47:1688:45:1603:-116.494,0,-117.1	0/1:127:63,64:63:2264:64:2288:-167.109,0,-153.876	0/1:147:75,72:75:2692:72:2580:-187.479,0,-184.492	0/1:61:34,27:34:1220:27:953:-67.6616,0,-87.1768	0/1:45:26,19:26:936:19:684:-47.8095,0,-64.8584	0/1:94:49,44:49:1741:44:1565:-112.789,0,-120.151	1/1:94:0,94:0:0:94:3348:-301.086,-28.2968,0	1/1:43:1,42:1:36:42:1495:-132.227,-10.6654,0	1/1:82:0,82:0:0:82:2912:-261.781,-24.6845,0	1/1:64:0,64:0:0:64:2294:-206.249,-19.2659,0	0/1:16:7,9:7:252:9:324:-24.6861,0,-16.8642	1/1:38:0,38:0:0:38:1368:-123.3,-11.4391,0	0/1:22:11,11:11:396:11:396:-29.3556,0,-27.2533	0/1:121:57,64:57:2029:64:2288:-169.48,0,-138.567	0/1:112:68,44:68:2428:44:1568:-107.633,0,-166.991	0/1:89:76,13:76:2724:13:468:-15.6627,0,-212.043	0/1:111:46,65:46:1648:65:2321:-175.046,0,-108.384	0/1:70:25,45:25:900:45:1612:-124.134,0,-55.2346	0/1:87:37,50:37:1332:50:1774:-133.681,0,-85.466	1/1:278:0,278:0:0:278:9938:-893.556,-83.6863,0	1/1:214:0,214:0:0:214:7658:-688.339,-64.4204,0	0/1:23:12,11:12:432:11:396:-28.9273,0,-29.7783	0/1:247:159,88:159:5682:88:3154:-209.486,0,-418.425	0/1:116:57,59:57:2040:59:2120:-156.064,0,-136.733	1/1:117:0,117:0:0:117:4176:-375.193,-35.2205,0	1/1:7:0,7:0:0:7:252:-23.018,-2.10721,0	0/1:10:8,2:8:288:2:72:-3.82317,0,-21.4166	1/1:1:0,1:0:0:1:32:-3.19913,-0.30103,0	1/1:18:0,18:0:0:18:633:-57.1825,-5.41854,0	1/1:20:0,20:0:0:20:702:-63.4972,-6.0206,0	1/1:240:0,240:0:0:240:8592:-772.33,-72.2472,0	0/1:73:51,22:51:1824:22:782:-48.6391,0,-131.457	1/1:49:0,49:0:0:49:1764:-158.918,-14.7505,0	0/1:4:1,3:1:36:3:108:-8.86626,0,-2.14203	0/1:134:74,60:74:2606:60:2138:-151.879,0,-177.435	0/1:18:10,8:10:360:8:288:-20.8364,0,-24.269	0/1:201:86,115:86:3077:115:4105:-308.861,0,-197.714	0/1:63:24,39:24:864:39:1400:-107.142,0,-55.8996	1/1:68:0,68:0:0:68:2409:-216.829,-20.47,0	1/1:165:0,165:0:0:165:5891:-529.908,-49.67,0	1/1:167:0,167:0:0:167:5953:-534.84,-50.272,0	0/1:186:97,89:97:3480:89:3147:-226.571,0,-242.826	1/1:90:0,90:0:0:90:3212:-288.706,-27.0927,0	1/1:69:0,69:0:0:69:2443:-219.495,-20.7711,0	1/1:78:0,78:0:0:78:2784:-250.494,-23.4803,0	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	0/1:126:65,61:65:2332:61:2179:-158.424,0,-160.093	0/1:55:22,33:22:792:33:1165:-88.4985,0,-52.0617	0/1:21:12,9:12:432:9:316:-22.4542,0,-28.589	1/1:113:0,113:0:0:113:4015:-361.265,-34.0164,0	0/1:57:23,34:23:824:34:1224:-93.1035,0,-53.6437	0/1:16:9,7:9:320:7:252:-18.2096,0,-22.6484	0/1:27:17,10:17:612:10:360:-24.5259,0,-45.8138	1/1:51:0,51:0:0:51:1824:-164.37,-15.3525,0	0/1:103:46,57:46:1648:57:2029:-151.735,0,-110.792	1/1:11:0,11:0:0:11:396:-35.9568,-3.31133,0	0/1:172:79,93:79:2836:93:3314:-246.665,0,-196.995	1/1:200:0,200:0:0:200:7157:-643.382,-60.206,0	1/1:51:0,51:0:0:51:1824:-164.16,-15.3525,0	1/1:106:2,104:2:72:104:3694:-325.14,-25.2091,0	0/1:160:104,56:104:3724:56:1995:-131.535,0,-268.63	1/1:136:5,131:5:180:131:4703:-406.698,-25.0494,0	1/1:36:0,36:0:0:36:1283:-115.13,-10.8371,0	1/1:69:0,69:0:0:69:2471:-222.407,-20.7711,0	1/1:54:0,54:0:0:54:1931:-173.91,-16.2556,0	1/1:20:0,20:0:0:20:693:-62.5222,-6.0206,0	0/1:132:68,64:68:2432:64:2259:-163.69,0,-162.899	1/1:73:0,73:0:0:73:2604:-234.413,-21.9752,0	1/1:180:0,179:0:0:179:6394:-574.27,-53.8844,0	1/1:130:1,129:1:36:129:4607:-410.683,-35.6794,0	1/1:138:0,138:0:0:138:4919:-442.698,-41.5421,0	1/1:75:4,71:4:144:71:2544:-216.439,-10.0431,0	0/1:19:9,10:9:320:10:352:-26.2952,0,-21.7992	0/1:91:49,42:49:1726:42:1503:-107.9,0,-116.941	1/1:130:0,130:0:0:130:4623:-415.58,-39.1339,0	0/1:125:66,59:66:2352:59:2099:-151.336,0,-163.443	1/1:60:0,59:0:0:59:2124:-190.804,-17.7608,0	1/1:78:0,78:0:0:78:2787:-249.654,-23.4803,0	0/1:49:24,25:24:864:25:900:-66.4581,0,-60.212	0/1:138:67,71:67:2389:71:2524:-185.112,0,-164.476	1/1:26:0,26:0:0:26:921:-83.1951,-7.82678,0	0/1:68:35,33:35:1260:33:1184:-86.3852,0,-86.8008	1/1:62:0,62:0:0:62:2228:-200.577,-18.6639,0	0/1:28:15,13:15:540:13:468:-33.9055,0,-37.0788	0/1:71:36,35:36:1296:35:1252:-91.4332,0,-86.6407	0/1:73:51,22:51:1836:22:784:-48.8612,0,-134.064	1/1:134:0,134:0:0:134:4747:-426.183,-40.338,0	1/1:112:0,112:0:0:112:3977:-357.057,-33.7154,0
chr10	1021414	.	C	T	18080.9	PASS	AB=0.430855;ABP=114.719;AC=49;AF=0.260638;AN=188;AO=1165;CIGAR=1X;DP=5214;DPB=5214;DPRA=1.0843;EPP=2532.78;EPPR=8786.62;GTI=1;LEN=1;MEANALT=1.03774;MQM=59.8618;MQMR=59.6616;NS=94;NUMALT=1;ODDS=2.07606;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41664;QR=144450;RO=4045;RPL=0;RPP=2532.78;RPPR=8786.62;RPR=1165;RUN=1;SAF=1165;SAP=2532.78;SAR=0;SRF=4045;SRP=8786.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:28,14:28:1004:14:500:-32.6929,0,-77.9264	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.249	0/1:87:55,32:55:1976:32:1148:-77.4402,0,-151.906	0/1:141:87,54:87:3096:54:1931:-131.614,0,-236.414	0/1:25:17,8:17:612:8:288:-18.7417,0,-47.8877	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/1:78:45,33:45:1616:33:1184:-83.388,0,-122.087	0/1:83:47,36:47:1680:36:1283:-90.7429,0,-126.499	0/1:68:36,32:36:1288:32:1152:-83.5201,0,-95.7442	0/1:33:20,13:20:716:13:468:-32.5257,0,-54.8314	0/1:23:17,6:17:608:6:216:-12.8668,0,-48.1236	0/1:66:32,34:32:1144:34:1211:-89.4275,0,-83.3945	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.181	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9826	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.083	0/0:57:57,0:57:2030:0:0:0,-17.1587,-182.946	0/1:10:7,3:7:252:3:108:-7.06487,0,-19.9112	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2327	0/1:52:20,32:20:720:32:1152:-88.3366,0,-49.4752	0/1:90:49,41:49:1748:41:1464:-104.952,0,-130.404	0/1:70:29,41:29:1032:41:1476:-112.064,0,-72.1181	0/1:68:45,23:45:1600:23:824:-54.0133,0,-123.806	0/1:32:22,10:22:788:10:356:-22.7483,0,-61.6118	0/1:35:18,17:18:636:17:599:-43.7018,0,-47.0296	0/0:146:146,0:146:5196:0:0:0,-43.9504,-467.365	0/0:151:151,0:151:5408:0:0:0,-45.4555,-486.435	0/1:18:12,6:12:424:6:216:-14.372,0,-33.0737	0/1:172:99,73:99:3532:73:2612:-183.481,0,-266.302	0/1:95:57,38:57:2044:38:1356:-93.7426,0,-155.62	0/0:79:79,0:79:2816:0:0:0,-23.7814,-253.671	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0928	0/1:32:16,16:16:572:16:576:-42.542,0,-42.1734	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.93	0/0:139:139,0:139:4929:0:0:0,-41.8432,-443.685	0/1:66:40,26:40:1436:26:936:-64.6915,0,-109.651	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1979	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:92:55,37:55:1964:37:1324:-91.7673,0,-149.328	0/1:24:11,13:11:383:13:468:-35.2349,0,-27.5762	0/1:84:45,39:45:1616:39:1396:-100.653,0,-120.441	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7839	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1482	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.962	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.297	0/1:154:94,60:94:3368:60:2139:-146.387,0,-256.907	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.277	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.675	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.566	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:73:39,34:39:1384:34:1224:-88.4919,0,-102.833	0/1:45:30,15:30:1076:15:540:-35.3902,0,-83.6065	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.306	0/1:41:23,18:23:820:18:640:-45.5871,0,-61.7779	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.578	0/1:52:27,25:27:964:25:885:-64.3138,0,-71.3147	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:92:68,23:68:2428:23:820:-46.2995,0,-190.986	0/0:146:143,2:143:5112:2:72:0,-37.1723,-453.36	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:82:81,1:81:2904:1:36:0,-21.0888,-257.994	0/1:112:68,44:68:2420:44:1561:-107.064,0,-184.336	0/0:129:129,0:129:4593:0:0:0,-38.8329,-413.522	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.294	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.265	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:87:59,28:59:2112:28:987:-62.9541,0,-164.033	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.044	0/0:135:135,0:135:4828:0:0:0,-40.639,-434.507	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.899	0/0:81:80,1:80:2860:1:36:0,-20.9027,-254.141	0/0:44:42,2:42:1473:2:72:0,-6.4086,-126.014	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/1:40:19,21:19:672:21:748:-55.6041,0,-48.7585	0/0:58:57,0:57:2028:0:0:0,-17.1587,-182.427	0/1:78:42,36:42:1488:36:1288:-92.7432,0,-110.734	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.648	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2701	0/1:27:13,14:13:451:14:495:-36.7552,0,-32.7849	0/1:50:24,26:24:860:26:936:-69.508,0,-62.6703	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:43:20,23:20:707:23:828:-61.8998,0,-51.0076	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.579	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:53:26,27:26:928:27:962:-70.4458,0,-67.8827	0/1:38:17,21:17:599:21:743:-55.7542,0,-42.799	0/0:39:38,0:38:1356:0:0:0,-11.4391,-121.978	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.094
chr10	1064231	.	GAATC	AAATG,AAATC	250645	PASS	AB=0.524445,0.469036;ABP=36.4519,56.6655;AC=136,50;AF=0.731183,0.268817;AN=186;AO=8784,3039;CIGAR=1X3M1X,1X4M;DP=11896;DPB=11897.8;DPRA=16.1522,1.26322;EPP=18990.5,6550.1;EPPR=16.0391;GTI=1;LEN=5,1;MEANALT=2.25,2.69091;MQM=59.9109,59.9799;MQMR=60;NS=93;NUMALT=2;ODDS=2.56789;PAIRED=0,0;PAIREDR=0;PAO=3,3;PQA=107,107;PQR=0;PRO=0;QA=309921,108706;QR=216;RO=6;RPL=8779,3034;RPP=19033.8,6558.76;RPPR=16.0391;RPR=5,5;RUN=1,1;SAF=5,1;SAP=19033.8,6593.43;SAR=8779,3038;SRF=0;SRP=16.0391;SRR=6;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:65:0,50,15:0:0:50,15:1752,540:-186.972,-44.4207,-29.3692,-142.909,0,-138.394	1/1:173:0,169,0:0:0:169,0:5977,0:-537.752,-50.8741,0,-537.752,-50.8741,-537.752	1/2:85:0,40,45:0:0:40,45:1409,1620:-247.252,-132.544,-120.502,-115.065,0,-101.518	1/2:238:0,108,127:0:0:108,127:3783,4547:-678.208,-370.837,-338.326,-307.409,0,-269.179	1/2:80:0,51,29:0:0:51,29:1816,1035:-232.744,-84.7332,-69.3807,-148.368,0,-139.638	1/2:113:0,60,53:0:0:60,53:2127,1908:-329.323,-156.043,-137.981,-173.637,0,-157.683	1/2:143:0,81,61:0:0:81,61:2813,2188:-407.225,-178.551,-154.168,-228.756,0,-210.393	1/2:315:0,195,116:0:0:195,116:6783,4111:-886.259,-334.979,-276.278,-551.355,0,-516.436	1/2:160:0,79,81:0:0:79,81:2792,2881:-462.523,-235.142,-211.361,-227.735,0,-203.352	1/2:216:0,124,92:0:0:124,92:4386,3292:-626.037,-268.805,-231.477,-357.588,0,-329.893	1/2:76:0,40,36:0:0:40,36:1408,1292:-220.366,-105.747,-93.7055,-114.975,0,-104.138	1/2:119:0,60,59:0:0:60,59:2114,2104:-343.981,-171.869,-153.807,-172.466,0,-154.706	1/1:94:0,94,0:0:0:94,0:3334,0:-300.278,-28.2968,0,-300.278,-28.2968,-300.278	1/1:137:0,136,0:0:0:136,0:4751,0:-427.536,-40.9401,0,-427.536,-40.9401,-427.536	1/1:98:0,97,0:0:0:97,0:3427,0:-308.374,-29.1999,0,-308.374,-29.1999,-308.374	1/1:100:0,100,0:0:0:100,0:3523,0:-317.282,-30.103,0,-317.282,-30.103,-317.282	1/2:125:0,66,58:0:0:66,58:2343,2084:-361.057,-170.152,-150.284,-191.043,0,-173.584	1/1:95:0,94,0:0:0:94,0:3359,0:-302.293,-28.2968,0,-302.293,-28.2968,-302.293	1/2:54:0,31,23:0:0:31,23:1095,828:-157.091,-67.9204,-58.5885,-89.528,0,-82.6043	1/2:176:0,78,97:0:0:78,97:2758,3476:-508.129,-283.501,-260.021,-224.633,0,-195.433	1/2:221:0,105,115:0:0:105,115:3731,4112:-639.395,-335.366,-303.758,-304.104,0,-269.486	1/2:48:0,18,30:0:0:18,30:637,1069:-139.375,-87.4906,-82.0721,-52.2392,0,-43.2083	1/2:108:0,73,35:0:0:73,35:2584,1260:-313.646,-103.169,-81.1942,-210.834,0,-200.298	1/2:200:0,93,106:0:0:93,106:3264,3756:-571.679,-306.042,-278.046,-265.698,0,-233.789	1/2:69:0,38,31:0:0:38,31:1360,1096:-200.523,-89.6161,-78.177,-111.262,0,-101.93	1/1:413:0,409,1:0:0:409,1:14407,32:-1295.87,-123.121,0,-1293.3,-120.538,-1293	1/1:261:0,258,0:0:0:258,0:9099,0:-818.432,-77.6657,0,-818.432,-77.6657,-818.432	1/2:61:0,30,30:0:0:30,30:1051,1080:-173.637,-88.1225,-79.0916,-85.5097,0,-76.4788	1/2:269:0,133,134:0:0:133,134:4719,4803:-776.25,-391.805,-351.768,-384.519,0,-344.181	1/2:215:0,136,77:0:0:136,77:4791,2746:-613.693,-223.865,-182.925,-389.853,0,-366.674	1/1:157:0,155,0:0:0:155,0:5454,0:-490.46,-46.6597,0,-490.46,-46.6597,-490.46	1/1:9:0,9,0:0:0:9,0:310,0:-28.2327,-2.70927,0,-28.2327,-2.70927,-28.2327	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:141,0:-13.0369,-1.20412,0,-13.0369,-1.20412,-13.0369	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:315:0,314,0:0:0:314,0:11133,0:-1001.26,-94.5234,0,-1001.26,-94.5234,-1001.26	1/2:185:0,88,97:0:0:88,97:3119,3480:-538.301,-284.211,-257.72,-254.446,0,-225.247	1/1:79:0,79,0:0:0:79,0:2817,0:-253.77,-23.7814,0,-253.77,-23.7814,-253.77	.:.:.:.:.:.:.:.	1/2:151:1,63,87:1:36:63,87:2213,3107:-430.185,-250.37,-234.343,-177.172,0,-153.92	1/2:56:0,31,24:0:0:31,24:1104,851:-159.309,-69.3251,-59.9932,-89.9794,0,-82.7547	1/2:128:0,63,64:0:0:63,64:2215,2266:-364.928,-184.629,-165.664,-180.345,0,-161.079	1/2:150:0,74,75:0:0:74,75:2628,2685:-432.653,-218.957,-196.681,-213.692,0,-191.115	1/1:108:0,106,0:0:0:106,0:3733,0:-335.814,-31.9092,0,-335.814,-31.9092,-335.814	1/1:165:0,165,0:0:0:165,0:5815,0:-523.46,-49.67,0,-523.46,-49.67,-523.46	1/1:138:0,138,0:0:0:138,0:4826,0:-434.502,-41.5421,0,-434.502,-41.5421,-434.502	1/2:187:1,97,88:1:36:97,88:3400,3151:-530.442,-254.08,-227.818,-273.773,0,-250.219	1/1:118:0,118,0:0:0:118,0:4159,0:-374.495,-35.5215,0,-374.495,-35.5215,-374.495	1/1:190:0,190,0:0:0:190,0:6764,0:-608.837,-57.1957,0,-608.837,-57.1957,-608.837	1/1:101:0,99,2:0:0:99,2:3486,72:-313.571,-29.802,0,-307.696,-23.5673,-307.094	1/2:6:0,3,3:0:0:3,3:103,108:-17.5271,-9.17208,-8.26899,-8.70651,0,-7.80342	1/2:112:0,57,55:0:0:57,55:2027,1976:-326.744,-161.558,-144.399,-165.543,0,-148.986	1/2:41:0,25,16:0:0:25,16:892,572:-119.714,-46.9969,-39.4712,-73.0741,0,-68.2576	1/2:17:0,7,10:0:0:7,10:251,360:-50.2057,-29.734,-27.6268,-20.8306,0,-17.8203	1/1:131:0,131,0:0:0:131,0:4619,0:-415.875,-39.4349,0,-415.875,-39.4349,-415.875	1/2:77:1,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chr10	1073537	.	A	G	115297	PASS	AB=0.414298;ABP=303.748;AC=137;AF=0.728723;AN=188;AO=5697;CIGAR=1X;DP=8476;DPB=8476;DPRA=9.10323;EPP=12373.9;EPPR=6028.85;GTI=4;LEN=1;MEANALT=1.04301;MQM=53.5972;MQMR=39.8285;NS=94;NUMALT=1;ODDS=2.22728;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202909;QR=99361;RO=2775;RPL=0;RPP=12373.9;RPPR=6028.85;RPR=5697;RUN=1;SAF=5697;SAP=12373.9;SAR=0;SRF=2775;SRP=6028.85;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:15,20:15:540:20:716:-53.9493,0,-34.0322	1/1:84:0,84:0:0:84:2982:-267.607,-25.2865,0	0/1:207:123,84:123:4400:84:3012:-208.11,0,-307.721	0/1:179:102,77:102:3660:77:2756:-191.954,0,-263.889	0/1:55:24,31:24:864:31:1101:-82.6998,0,-56.9423	0/1:49:29,19:29:1036:19:672:-45.9877,0,-72.8343	0/1:123:74,49:74:2641:49:1733:-119.006,0,-192.803	0/1:123:76,47:76:2732:47:1680:-113.893,0,-192.629	0/1:104:67,37:67:2373:37:1332:-88.4894,0,-167.857	0/1:91:59,32:59:2105:32:1152:-76.4802,0,-155.772	0/1:84:52,32:52:1864:32:1125:-75.9803,0,-137.415	0/1:115:70,45:70:2501:45:1600:-108.984,0,-174.566	1/1:60:1,59:1:36:59:2120:-186.548,-15.6883,0	1/1:86:0,86:0:0:86:3080:-276.498,-25.8886,0	1/1:63:0,63:0:0:63:2260:-203.431,-18.9649,0	1/1:69:0,69:0:0:69:2468:-221.611,-20.7711,0	0/1:34:21,13:21:752:13:468:-31.9015,0,-53.8716	1/1:25:0,25:0:0:25:881:-79.3847,-7.52575,0	0/1:56:31,25:31:1112:25:900:-63.6383,0,-76.5123	0/1:217:123,94:123:4412:94:3369:-237.429,0,-318.871	0/1:132:80,52:80:2853:52:1833:-124.39,0,-204.08	0/1:133:104,29:104:3705:29:1006:-50.7362,0,-279.004	0/1:120:69,51:69:2476:51:1832:-128.606,0,-178.438	0/1:67:41,26:41:1472:26:932:-63.5367,0,-105.903	0/1:113:62,51:62:2224:51:1824:-129.766,0,-156.454	1/1:209:0,209:0:0:209:7458:-669.524,-62.9153,0	1/1:227:0,227:0:0:227:8114:-726.44,-68.3338,0	0/1:29:17,12:17:608:12:432:-30.4321,0,-43.4563	0/1:231:155,76:155:5528:76:2708:-173.001,0,-407.669	0/1:122:59,63:59:2109:63:2244:-164.2,0,-144.242	1/1:88:0,88:0:0:88:3107:-279.156,-26.4906,0	1/1:5:0,5:0:0:5:180:-16.5286,-1.50515,0	0/1:26:5,21:5:172:21:756:-60.318,0,-6.31279	1/1:2:0,2:0:0:2:72:-6.81366,-0.60206,0	1/1:13:0,13:0:0:13:464:-41.5015,-3.91339,0	1/1:33:0,33:0:0:33:1173:-105.245,-9.93399,0	1/1:147:0,147:0:0:147:5243:-469.473,-44.2514,0	0/1:59:35,24:35:1256:24:852:-58.8864,0,-90.7408	1/1:65:0,65:0:0:65:2284:-203.856,-19.567,0	0/1:6:5,1:5:176:1:36:-1.78699,0,-13.7301	0/1:131:56,75:56:2012:75:2677:-198.735,0,-133.319	0/1:43:23,20:23:828:20:716:-49.6548,0,-58.8486	0/1:123:68,55:68:2436:55:1929:-136.428,0,-170.286	0/1:62:31,31:31:1116:31:1108:-81.0891,0,-77.9998	1/1:38:0,38:0:0:38:1364:-122.782,-11.4391,0	1/1:67:0,67:0:0:67:2346:-211.037,-20.169,0	1/1:54:0,54:0:0:54:1936:-173.705,-16.2556,0	0/1:164:105,59:105:3749:59:2105:-139.913,0,-274.299	1/1:80:0,80:0:0:80:2849:-255.755,-24.0824,0	1/1:106:0,106:0:0:106:3747:-336.253,-31.9092,0	1/1:143:0,142:0:0:142:5066:-454.974,-42.7463,0	0/1:17:7,10:7:248:10:360:-27.6032,0,-16.9852	0/1:135:82,53:82:2936:53:1908:-130.091,0,-208.758	0/1:91:58,33:58:2072:33:1176:-77.7199,0,-152.03	0/0:10:10,0:10:360:0:0:0,-3.0103,-30.8272	1/1:128:0,128:0:0:128:4530:-406.65,-38.5318,0	0/1:33:14,19:14:504:19:676:-51.1399,0,-33.9623	0/1:16:11,5:11:392:5:165:-10.3433,0,-29.6647	0/1:23:15,8:15:540:8:288:-19.3192,0,-40.4337	1/1:136:0,136:0:0:136:4822:-432.508,-40.9401,0	0/1:110:58,52:58:2080:52:1857:-133.984,0,-148.547	1/1:7:0,7:0:0:7:252:-22.9297,-2.10721,0	0/1:167:95,72:95:3393:72:2576:-181.343,0,-242.212	1/1:138:0,138:0:0:138:4898:-440.403,-41.5421,0	1/1:101:0,101:0:0:101:3585:-321.497,-30.404,0	1/1:52:0,52:0:0:52:1852:-166.782,-15.6536,0	0/1:153:87,66:87:3124:66:2356:-165.592,0,-223.618	1/1:183:0,183:0:0:183:6545:-586.657,-55.0885,0	1/1:52:0,52:0:0:52:1864:-166.304,-15.6536,0	1/1:65:0,65:0:0:65:2298:-206.495,-19.567,0	1/1:49:0,49:0:0:49:1737:-156.337,-14.7505,0	1/1:33:0,33:0:0:33:1180:-106.219,-9.93399,0	0/1:110:62,48:62:2216:48:1705:-119.783,0,-154.655	1/1:95:0,95:0:0:95:3335:-298.175,-28.5979,0	1/1:166:0,165:0:0:165:5893:-527.864,-49.67,0	1/1:176:0,176:0:0:176:6258:-561.647,-52.9813,0	1/1:75:5,70:5:180:70:2485:-207.024,-6.80047,0	1/1:95:0,95:0:0:95:3370:-302.455,-28.5979,0	0/1:19:7,12:7:252:12:432:-33.3752,0,-15.7991	0/1:94:60,34:60:2156:34:1205:-79.7174,0,-156.284	1/1:102:0,102:0:0:102:3641:-325.956,-30.7051,0	0/1:206:122,83:122:4380:83:2949:-202.871,0,-317.098	1/1:49:0,49:0:0:49:1741:-156.779,-14.7505,0	1/1:53:0,53:0:0:53:1900:-170.689,-15.9546,0	0/1:36:14,22:14:500:22:788:-60.187,0,-32.4107	0/1:125:72,53:72:2588:53:1908:-133.68,0,-187.105	1/1:17:0,17:0:0:17:612:-55.0915,-5.11751,0	0/1:54:28,26:28:1004:26:936:-68.0489,0,-68.9547	1/1:78:0,78:0:0:78:2779:-249.185,-23.4803,0	0/1:67:40,27:40:1440:27:968:-67.1431,0,-102.232	0/1:146:86,60:86:3088:60:2109:-145.426,0,-219.997	0/1:79:60,19:60:2160:19:684:-37.5411,0,-163.673	1/1:148:0,148:0:0:148:5274:-472.597,-44.5524,0	1/1:90:0,90:0:0:90:3212:-288.765,-27.0927,0
chr10	1073579	.	GTTCC	ATTCC,ATTCT	175562	PASS	AB=0.414127,0.579357;ABP=307.705,263.215;AC=137,51;AF=0.728723,0.271277;AN=188;AO=5733,2773;CIGAR=1X4M,1X3M1X;DP=8566;DPB=8566;DPRA=9.2,1.07999;EPP=12452.1,6024.5;EPPR=11.6962;GTI=4;LEN=1,5;MEANALT=2.08602,2.50943;MQM=53.7071,39.74;MQMR=50.75;NS=94;NUMALT=2;ODDS=2.55101;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=205015,97373;QR=135;RO=4;RPL=5733,2773;RPP=12452.1,6024.5;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=5733,2773;SAP=12452.1,6024.5;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:34:0,19,15:0:0:19,15:684,515:-93.8306,-38.2729,-32.5533,-55.8916,0,-51.3762	1/1:82:0,81,0:0:0:81,0:2887,0:-259.144,-24.3834,0,-259.144,-24.3834,-259.144	1/2:206:0,85,119:0:0:85,119:3044,4196:-565.903,-318.6,-293.012,-247.434,0,-211.611	1/2:181:0,75,104:0:0:75,104:2676,3626:-500.898,-283.496,-260.919,-217.44,0,-186.132	1/2:54:0,30,24:0:0:30,24:1080,855:-153.728,-65.7336,-56.7027,-88.3405,0,-81.1158	1/2:50:0,21,29:0:0:21,29:756,1022:-139.16,-77.8304,-71.5088,-61.6762,0,-52.9464	1/2:125:0,51,73:0:0:51,73:1815,2566:-348.914,-201.284,-185.932,-147.677,0,-125.702	1/2:123:0,47,76:0:0:47,76:1655,2684:-337.597,-203.676,-189.527,-134.264,0,-111.386	1/2:107:0,39,67:0:0:39,67:1396,2367:-292.041,-178.587,-166.847,-113.578,0,-93.4088	1/2:91:0,32,59:0:0:32,59:1148,2054:-254.979,-161.449,-151.816,-93.8816,0,-76.1208	1/2:85:0,33,52:0:0:33,52:1180,1855:-242.179,-146.4,-136.466,-96.1312,0,-80.4777	1/2:117:0,44,72:0:0:44,72:1576,2522:-318.33,-190.293,-177.047,-128.105,0,-106.43	1/1:61:1,60,0:1:31:60,0:2127,0:-188.279,-16.0416,0,-188.58,-18.0618,-190.366	1/1:88:0,88,0:0:0:88,0:3130,0:-281.186,-26.4906,0,-281.186,-26.4906,-281.186	1/1:65:0,65,0:0:0:65,0:2332,0:-209.588,-19.567,0,-209.588,-19.567,-209.588	1/1:69:0,69,0:0:0:69,0:2466,0:-221.373,-20.7711,0,-221.373,-20.7711,-221.373	1/2:34:0,13,21:0:0:13,21:464,739:-94.4479,-56.9247,-53.0113,-37.8692,0,-31.5476	1/1:26:0,25,0:0:0:25,0:900,0:-80.8574,-7.52575,0,-80.8574,-7.52575,-80.8574	1/2:58:0,27,31:0:0:27,31:956,1097:-160.184,-83.0401,-74.9123,-77.4853,0,-68.1534	1/2:219:0,96,122:0:0:96,122:3425,4296:-616.719,-338.248,-309.349,-278.529,0,-241.803	1/2:134:0,54,80:0:0:54,80:1919,2791:-370.603,-215.453,-199.198,-155.494,0,-131.412	1/2:135:0,29,105:0:0:29,105:1036,3638:-367.499,-283.105,-274.376,-84.461,0,-52.8528	1/2:121:0,52,68:0:0:52,68:1860,2400:-339.404,-188.121,-172.467,-151.325,0,-130.855	1/2:68:0,25,42:0:0:25,42:888,1464:-186.092,-114.012,-106.487,-72.1543,0,-59.511	1/2:114:0,51,63:0:0:51,63:1817,2201:-318.18,-170.783,-155.431,-147.742,0,-128.777	1/1:213:0,212,0:0:0:212,0:7607,0:-682.648,-63.8184,0,-682.648,-63.8184,-682.648	1/1:229:0,225,0:0:0:225,0:8051,0:-722.392,-67.7318,0,-722.392,-67.7318,-722.392	1/2:30:0,13,17:0:0:13,17:468,597:-84.4157,-46.2815,-42.3681,-38.4825,0,-33.365	1/2:234:0,77,155:0:0:77,155:2735,5449:-647.254,-425.257,-402.078,-222.079,0,-175.419	1/2:121:0,61,59:0:0:61,59:2180,2094:-338.798,-161.907,-143.544,-177.033,0,-159.272	1/1:88:0,88,0:0:0:88,0:3128,0:-281.025,-26.4906,0,-281.025,-26.4906,-281.025	1/1:5:0,5,0:0:0:5,0:180,0:-16.5286,-1.50515,0,-16.5286,-1.50515,-16.5286	1/2:27:0,21,3:0:0:21,3:756,106:-69.772,-8.26911,-1.94748,-61.5333,0,-60.6302	1/1:2:0,2,0:0:0:2,0:72,0:-6.81366,-0.60206,0,-6.81366,-0.60206,-6.81366	1/1:13:0,13,0:0:0:13,0:464,0:-41.3662,-3.91339,0,-41.3662,-3.91339,-41.3662	1/1:33:0,33,0:0:0:33,0:1188,0:-106.225,-9.93399,0,-106.225,-9.93399,-106.225	1/1:157:1,156,0:1:35:156,0:5563,0:-496.101,-43.7634,0,-496.402,-46.9607,-499.249	1/2:59:0,23,35:0:0:23,35:828,1235:-163.42,-96.0819,-89.1582,-67.3429,0,-56.8068	1/1:66:0,66,0:0:0:66,0:2347,0:-210.137,-19.868,0,-210.137,-19.868,-210.137	1/2:6:0,1,5:0:0:1,5:36,179:-17.2007,-14.2651,-13.9641,-3.29214,0,-1.78699	1/2:133:0,76,56:0:0:76,56:2722,1966:-372.817,-152.37,-129.492,-220.538,0,-203.681	1/2:43:0,18,24:0:0:18,24:644,860:-118.527,-66.0959,-60.6774,-52.5394,0,-45.3146	1/2:128:0,59,69:0:0:59,69:2118,2413:-357.683,-185.405,-167.644,-172.624,0,-151.853	1/2:64:0,33,31:0:0:33,31:1176,1089:-180.946,-85.5154,-75.5814,-95.7771,0,-86.4452	1/1:40:0,40,0:0:0:40,0:1428,0:-128.6,-12.0412,0,-128.6,-12.0412,-128.6	1/1:68:0,68,0:0:0:68,0:2426,0:-218.035,-20.47,0,-218.035,-20.47,-218.035	1/1:55:0,53,0:0:0:53,0:1886,0:-168.967,-15.9546,0,-168.967,-15.9546,-168.967	1/2:163:0,58,104:0:0:58,104:2084,3632:-453.939,-284.393,-266.933,-169.699,0,-138.392	1/1:82:0,80,0:0:0:80,0:2864,0:-257.124,-24.0824,0,-257.124,-24.0824,-257.124	1/1:107:0,107,0:0:0:107,0:3832,0:-344.269,-32.2102,0,-344.269,-32.2102,-344.269	1/1:145:1,144,0:1:33:144,0:5175,0:-461.78,-40.3502,0,-462.081,-43.3483,-464.749	1/2:17:0,10,7:0:0:10,7:360,247:-49.2906,-19.9308,-16.9205,-29.7104,0,-27.6032	1/2:136:0,55,81:0:0:55,81:1962,2878:-379.251,-220.405,-203.848,-159.193,0,-134.81	1/2:93:0,34,58:0:0:34,58:1216,2067:-260.05,-161.23,-150.994,-98.8869,0,-81.4272	2/2:10:0,0,10:0:0:0,10:0,341:-29.4572,-29.4572,-29.4572,-3.0103,-3.0103,0	1/1:132:0,132,0:0:0:132,0:4740,0:-425.35,-39.736,0,-425.35,-39.736,-425.35	1/2:32:0,18,14:0:0:18,14:648,485:-91.3268,-38.5345,-33.116,-53.1388,0,-48.9243	1/2:16:0,5,11:0:0:5,11:180,392:-45.8552,-31.1815,-29.6763,-15.0286,0,-11.7172	1/2:26:0,11,15:0:0:11,15:396,536:-74.8034,-42.5462,-39.2348,-32.6109,0,-28.0955	1/1:138:0,138,0:0:0:138,0:4936,0:-443.108,-41.5421,0,-443.108,-41.5421,-443.108	1/2:112:0,53,59:0:0:53,59:1895,2050:-316.335,-162.122,-146.167,-154.561,0,-136.8	1/1:7:0,7,0:0:0:7,0:252,0:-22.9297,-2.10721,0,-22.9297,-2.10721,-22.9297	1/2:166:0,69,95:0:0:69,95:2484,3341:-462.745,-260.282,-239.51,-202.534,0,-173.936	1/1:140:0,139,0:0:0:139,0:4979,0:-447.401,-41.8432,0,-447.401,-41.8432,-447.401	1/1:100:0,98,0:0:0:98,0:3504,0:-314.413,-29.5009,0,-314.413,-29.5009,-314.413	1/1:51:0,51,0:0:0:51,0:1820,0:-163.92,-15.3525,0,-163.92,-15.3525,-163.92	1/2:152:0,65,86:0:0:65,86:2328,3034:-426.041,-236.926,-217.359,-189.187,0,-163.299	1/1:182:0,180,0:0:0:180,0:6450,0:-578.437,-54.1854,0,-578.437,-54.1854,-578.437	1/1:54:0,53,1:0:0:53,1:1888,33:-169.241,-15.9546,0,-167.131,-13.5748,-166.83	1/1:67:0,66,0:0:0:66,0:2356,0:-211.491,-19.868,0,-211.491,-19.868,-211.491	1/1:50:0,50,0:0:0:50,0:1792,0:-161.282,-15.0515,0,-161.282,-15.0515,-161.282	1/1:35:0,35,0:0:0:35,0:1248,0:-112.301,-10.5361,0,-112.301,-10.5361,-112.301	1/2:109:0,48,61:0:0:48,61:1720,2095:-300.051,-160.778,-146.329,-139.616,0,-121.253	1/1:96:0,94,2:0:0:94,2:3359,72:-300.608,-28.2968,0,-295.86,-23.2499,-295.258	1/1:170:0,169,0:0:0:169,0:6053,0:-542.648,-50.8741,0,-542.648,-50.8741,-542.648	1/1:173:0,170,0:0:0:170,0:6099,0:-547.94,-51.1751,0,-547.94,-51.1751,-547.94	1/1:74:0,70,4:0:0:70,4:2489,141:-222.713,-21.0721,0,-211.909,-9.93346,-210.705	1/1:94:0,94,0:0:0:94,0:3357,0:-301.101,-28.2968,0,-301.101,-28.2968,-301.101	1/2:20:0,12,8:0:0:12,8:432,278:-56.7167,-21.5749,-17.9625,-35.4824,0,-33.0742	1/2:93:0,33,60:0:0:33,60:1184,2106:-259.057,-163.215,-153.281,-96.1913,0,-78.1295	1/1:104:0,102,0:0:0:102,0:3647,0:-326.588,-30.7051,0,-326.588,-30.7051,-326.588	1/2:209:0,86,121:0:0:86,121:3057,4272:-582.734,-334.408,-308.519,-248.417,0,-211.992	1/1:49:0,49,0:0:0:49,0:1760,0:-158.487,-14.7505,0,-158.487,-14.7505,-158.487	1/1:53:0,53,0:0:0:53,0:1881,0:-169.159,-15.9546,0,-169.159,-15.9546,-169.159	1/2:36:0,22,14:0:0:22,14:792,485:-102.474,-38.0561,-31.4334,-64.7609,0,-60.5465	1/2:129:0,55,74:0:0:55,74:1972,2574:-361.978,-201.764,-185.207,-160.562,0,-138.286	1/1:18:0,18,0:0:0:18,0:639,0:-57.5146,-5.41854,0,-57.5146,-5.41854,-57.5146	1/2:54:0,26,28:0:0:26,28:928,964:-149.485,-74.0605,-66.2337,-75.7663,0,-67.3375	1/1:78:0,77,0:0:0:77,0:2764,0:-247.677,-23.1793,0,-247.677,-23.1793,-247.677	1/2:68:0,28,40:0:0:28,40:1004,1405:-189.968,-108.195,-99.7658,-82.1208,0,-70.0796	1/2:146:1,60,83:1:36:60,83:2148,2904:-395.646,-221.589,-206.465,-171.436,0,-149.388	1/2:79:0,17,61:0:0:17,61:608,2165:-219.542,-170.144,-165.027,-49.5427,0,-31.1799	1/1:149:0,147,0:0:0:147,0:5257,0:-471.884,-44.2514,0,-471.884,-44.2514,-471.884	1/1:91:0,91,0:0:0:91,0:3256,0:-292.7,-27.3937,0,-292.7,-27.3937,-292.7
chr10	1073590	.	T	G	42846	PASS	AB=0.577197;ABP=242.723;AC=51;AF=0.271277;AN=188;AO=2688;CIGAR=1X;DP=8400;DPB=8400;DPRA=1.08007;EPP=5839.93;EPPR=12395.6;GTI=4;LEN=1;MEANALT=1.07692;MQM=39.7515;MQMR=53.6828;NS=94;NUMALT=1;ODDS=2.2183;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95490;QR=202886;RO=5707;RPL=2688;RPP=5839.93;RPPR=12395.6;RPR=0;RUN=1;SAF=2688;SAP=5839.93;SAR=0;SRF=5707;SRP=12395.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:19,14:19:684:14:493:-31.3016,0,-51.6772	0/0:84:84,0:84:2990:0:0:0,-25.2865,-268.468	0/1:203:84,118:84:3016:118:4191:-290.759,0,-209.532	0/1:177:73,104:73:2605:104:3694:-266.217,0,-180.552	0/1:55:31,24:31:1116:24:864:-56.9423,0,-84.0486	0/1:48:20,28:20:712:28:1004:-70.1398,0,-49.7972	0/1:123:51,72:51:1797:72:2576:-186.819,0,-124.137	0/1:121:48,73:48:1707:73:2602:-182.264,0,-116.93	0/1:102:39,63:39:1387:63:2240:-158.221,0,-93.9231	0/1:87:32,55:32:1148:55:1953:-143.745,0,-77.3254	0/1:83:31,52:31:1104:52:1829:-135.162,0,-74.2093	0/1:114:44,70:44:1560:70:2491:-174.312,0,-105.696	0/0:59:59,0:59:2095:0:0:0,-17.7608,-187.885	0/0:88:88,0:88:3106:0:0:0,-26.4906,-278.85	0/0:64:64,0:64:2288:0:0:0,-19.2659,-205.903	0/0:68:68,0:68:2409:0:0:0,-20.47,-216.381	0/1:34:13,21:13:459:21:733:-52.4412,0,-31.0931	0/0:26:26,0:26:914:0:0:0,-7.82678,-82.362	0/1:56:26,30:26:936:30:1072:-73.206,0,-65.9431	0/1:216:97,119:97:3477:119:4254:-305.908,0,-246.591	0/1:128:53,75:53:1870:75:2626:-186.544,0,-128.386	0/1:130:28,102:28:985:102:3617:-272.654,0,-49.7557	0/1:117:50,67:50:1783:67:2412:-174.198,0,-125.106	0/1:66:26,40:26:918:40:1409:-101.22,0,-62.5794	0/1:107:50,57:50:1775:57:1995:-140.026,0,-127.128	0/0:212:212,0:212:7546:0:0:0,-63.8184,-677.388	0/0:225:225,0:225:8030:0:0:0,-67.7317,-719.789	0/1:30:13,17:13:464:17:597:-42.715,0,-33.0056	0/1:227:74,152:74:2639:152:5395:-399.205,0,-168.953	0/1:119:61,58:61:2165:58:2060:-140.872,0,-157.726	0/0:88:88,0:88:3114:0:0:0,-26.4906,-279.683	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5286	0/1:26:22,4:22:777:4:144:-3.56413,0,-62.1964	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81366	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.7563	0/0:33:33,0:33:1163:0:0:0,-9.93399,-104.106	0/0:148:148,0:148:5246:0:0:0,-44.5524,-470.538	0/1:57:23,34:23:809:34:1220:-88.2338,0,-55.6199	0/0:66:66,0:66:2342:0:0:0,-19.868,-208.493	0/1:6:1,5:1:36:5:180:-14.0229,0,-1.78699	0/1:132:76,56:76:2708:56:1990:-131.438,0,-201.218	0/1:41:18,23:18:639:23:816:-57.7335,0,-45.3894	0/1:122:57,65:57:1997:65:2330:-161.586,0,-142.767	0/1:61:32,29:32:1144:29:1040:-72.2268,0,-84.5067	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.45	0/0:68:68,0:68:2411:0:0:0,-20.47,-216.764	0/0:56:56,0:56:1967:0:0:0,-16.8577,-176.174	0/1:160:59,101:59:2102:101:3601:-263.327,0,-140.806	0/0:81:81,0:81:2866:0:0:0,-24.3834,-257.333	0/0:102:102,0:102:3648:0:0:0,-30.7051,-328.082	0/0:143:143,0:143:5095:0:0:0,-43.0473,-457.988	0/1:17:10,7:10:360:7:252:-17.2998,0,-27.6032	0/1:134:55,79:55:1950:79:2828:-199.549,0,-134.341	0/1:92:34,58:34:1224:58:2076:-151.355,0,-82.4279	1/1:10:0,10:0:0:10:345:-29.6477,-3.0103,0	0/0:130:130,0:130:4595:0:0:0,-39.1339,-412.446	0/1:32:18,14:18:644:14:495:-33.523,0,-48.5799	0/1:15:5,10:5:176:10:360:-27.135,0,-11.654	0/1:25:10,15:10:351:15:531:-39.1085,0,-24.3799	0/0:134:134,0:134:4773:0:0:0,-40.338,-428.184	0/1:109:52,57:52:1864:57:2016:-143.871,0,-134.925	0/0:6:6,0:6:197:0:0:0,-1.80618,-18.0409	0/1:164:71,93:71:2556:93:3296:-235.456,0,-180.378	0/0:137:137,0:137:4861:0:0:0,-41.2411,-437.077	0/0:99:99,0:99:3535:0:0:0,-29.802,-316.725	0/0:52:52,0:52:1827:0:0:0,-15.6536,-164.516	0/1:148:67,81:67:2392:81:2869:-204.544,0,-169.962	0/0:182:182,0:182:6503:0:0:0,-54.7875,-583.12	0/0:52:52,0:52:1820:0:0:0,-15.6536,-163.081	0/0:66:66,0:66:2329:0:0:0,-19.868,-209.195	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.566	0/0:35:35,0:35:1242:0:0:0,-10.536,-111.756	0/1:105:48,57:48:1695:57:2028:-140.662,0,-120.281	0/0:93:92,1:92:3274:1:36:0,-25.4371,-290.67	0/0:165:164,0:164:5834:0:0:0,-49.3689,-523.214	0/0:177:177,0:177:6295:0:0:0,-53.2823,-565.164	0/0:72:68,4:68:2432:4:144:0,-9.14004,-205.58	0/0:97:97,0:97:3421:0:0:0,-29.1999,-307.002	0/1:18:11,7:11:392:7:252:-16.1811,0,-30.0881	0/1:93:34,59:34:1215:59:2097:-151.983,0,-80.9115	0/0:104:104,0:104:3703:0:0:0,-31.3071,-331.681	0/1:200:83,117:83:2944:117:4177:-301.473,0,-204.052	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.77	0/0:55:55,0:55:1952:0:0:0,-16.5566,-175.357	0/1:33:19,13:19:684:13:461:-30.3768,0,-51.7756	0/1:125:55,70:55:1927:70:2469:-177.206,0,-135.445	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.3729	0/1:52:25,27:25:896:27:959:-65.8566,0,-65.1017	0/0:79:79,0:79:2775:0:0:0,-23.7814,-248.955	0/1:66:27,39:27:972:39:1374:-97.6302,0,-67.8056	0/1:145:62,82:62:2188:82:2866:-202.608,0,-152.735	0/1:77:17,60:17:599:60:2131:-162.248,0,-30.8102	0/0:149:149,0:149:5309:0:0:0,-44.8535,-475.489	0/0:89:89,0:89:3180:0:0:0,-26.7917,-285.88
chr10	1120103	.	GG	AA,AG	38890.5	PASS	AB=0.506692,0.491396;ABP=3.82408,4.35553;AC=134,50;AF=0.728261,0.271739;AN=184;AO=2863,1030;CIGAR=2X,1X1M;DP=3899;DPB=3900;DPRA=0,1.02564;EPP=6219.94,2239.63;EPPR=0;GTI=6;LEN=2,1;MEANALT=1.63043,2.07692;MQM=23.5606,25.5874;MQMR=0;NS=92;NUMALT=2;ODDS=0.0808623;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=68,0;PQR=0;PRO=0;QA=102224,26385;QR=0;RO=0;RPL=0,0;RPP=6219.94,2239.63;RPPR=0;RPR=2863,1030;RUN=1,1;SAF=2863,1030;SAP=6219.94,2239.63;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:17:0,13,4:0:0:13,4:468,92:-26.5257,-6.1961,-2.28271,-20.5313,0,-19.3271	1/1:21:0,21,0:0:0:21,0:756,0:-39.4686,-6.32163,0,-39.4686,-6.32163,-39.4686	1/2:37:0,26,11:0:0:26,11:923,264:-55.9169,-16.5867,-8.75991,-39.5299,0,-36.2186	1/2:70:0,37,33:0:0:37,33:1317,890:-130.441,-61.4781,-50.34,-69.2031,0,-59.2691	1/2:15:0,5,10:0:0:5,10:180,250:-25.759,-17.0066,-15.5014,-8.97763,0,-5.96733	1/2:12:0,5,7:0:0:5,7:180,161:-18.5813,-10.6932,-9.18802,-8.09314,0,-5.98593	1/2:42:0,9,32:0:0:9,32:316,854:-75.3631,-58.5568,-55.8475,-16.7962,0,-7.16325	1/2:53:0,23,30:0:0:23,30:828,701:-81.3415,-45.069,-38.1453,-36.4773,0,-27.4464	1/2:40:0,21,19:0:0:21,19:756,435:-60.7294,-28.501,-22.1794,-32.4297,0,-26.7101	1/2:36:0,16,20:0:0:16,20:576,530:-66.4442,-36.6887,-31.8722,-29.9938,0,-23.9732	1/2:49:0,25,24:0:0:25,24:898,642:-92.0989,-44.3007,-36.7749,-48.0398,0,-40.8151	1/2:57:0,38,19:0:0:38,19:1356,437:-88.1851,-28.6815,-17.2423,-59.7061,0,-53.9865	1/1:81:0,81,0:0:0:81,0:2887,0:-151.326,-24.3834,0,-151.326,-24.3834,-151.326	1/1:23:0,23,0:0:0:23,0:826,0:-47.3896,-6.92369,0,-47.3896,-6.92369,-47.3896	1/1:42:0,42,0:0:0:42,0:1499,0:-91.4059,-12.6433,0,-91.4059,-12.6433,-91.4059	1/1:42:0,42,0:0:0:42,0:1512,0:-84.7154,-12.6433,0,-84.7154,-12.6433,-84.7154	1/2:29:0,6,23:0:0:6,23:216,529:-43.9645,-34.6776,-32.8714,-9.49123,0,-2.56754	1/1:16:0,16,0:0:0:16,0:572,0:-30.2416,-4.81648,0,-30.2416,-4.81648,-30.2416	1/2:27:0,8,19:0:0:8,19:286,435:-41.1918,-28.5808,-26.1726,-12.8168,0,-7.09727	1/2:45:0,29,16:0:0:29,16:1031,417:-84.0406,-28.8019,-20.072,-55.4752,0,-50.6588	1/2:75:0,39,36:0:0:39,36:1398,896:-125.685,-60.2914,-48.5512,-65.6133,0,-54.7762	1/2:55:0,22,33:0:0:22,33:773,956:-112.584,-67.4333,-60.8106,-45.4112,0,-35.4772	1/2:45:0,33,12:0:0:33,12:1178,302:-82.4335,-20.5468,-10.6128,-62.1137,0,-58.5013	1/2:28:0,12,16:0:0:12,16:430,401:-46.1281,-27.169,-23.5567,-19.173,0,-14.3565	1/2:38:0,19,19:0:0:19,19:684,473:-64.5755,-31.9338,-26.2143,-32.8633,0,-27.1437	1/1:88:0,88,0:0:0:88,0:3129,0:-202.957,-26.4906,0,-202.957,-26.4906,-202.957	1/1:116:0,116,0:0:0:116,0:4129,0:-234.593,-34.9195,0,-234.593,-34.9195,-234.593	1/2:18:0,12,6:0:0:12,6:432,150:-31.2966,-10.2919,-6.67957,-21.2273,0,-19.4211	1/2:97:0,61,36:0:0:61,36:2158,1020:-193.625,-71.4753,-53.1125,-122.404,0,-111.567	1/2:47:0,17,30:0:0:17,30:597,750:-78.5412,-50.5798,-45.4623,-28.1789,0,-19.148	1/1:52:0,51,0:0:0:51,0:1826,0:-110.635,-15.3525,0,-110.635,-15.3525,-110.635	1/1:2:0,2,0:0:0:2,0:72,0:-4.32984,-0.60206,0,-4.32984,-0.60206,-4.32984	1/2:11:0,4,7:0:0:4,7:142,175:-18.9625,-11.9706,-10.7665,-7.21667,0,-5.10946	.:.:.:.:.:.:.:.	1/1:3:0,3,0:0:0:3,0:108,0:-5.84244,-0.90309,0,-5.84244,-0.90309,-5.84244	1/1:6:0,6,0:0:0:6,0:206,0:-11.3799,-1.80618,0,-11.3799,-1.80618,-11.3799	1/1:160:0,160,0:0:0:160,0:5723,0:-376.248,-48.1648,0,-376.248,-48.1648,-376.248	1/2:46:0,25,21:0:0:25,21:900,525:-79.2249,-35.4719,-27.9461,-43.9766,0,-37.655	1/1:28:0,28,0:0:0:28,0:998,0:-52.5487,-8.42884,0,-52.5487,-8.42884,-52.5487	1/2:4:0,3,1:0:0:3,1:108,25:-7.15441,-1.89863,-0.995537,-5.47773,0,-5.1767	1/2:42:0,22,19:0:0:22,19:792,473:-68.7953,-31.7064,-25.0837,-37.0813,0,-31.3618	1/2:31:0,15,16:0:0:15,16:540,400:-53.1579,-27.0785,-22.5631,-26.3028,0,-21.4863	1/2:62:0,39,23:0:0:39,23:1372,574:-104.116,-38.739,-26.9988,-65.5968,0,-58.6731	1/2:29:0,16,13:0:0:16,13:576,356:-54.81,-24.0979,-19.2814,-30.9536,0,-27.0403	1/1:42:0,42,0:0:0:42,0:1500,0:-93.1642,-12.6433,0,-93.1642,-12.6433,-93.1642	1/1:33:0,33,0:0:0:33,0:1178,0:-77.1111,-9.93399,0,-77.1111,-9.93399,-77.1111	1/1:30:0,30,0:0:0:30,0:1061,0:-55.4607,-9.0309,0,-55.4607,-9.0309,-55.4607	1/2:47:0,31,16:0:0:31,16:1108,430:-88.3754,-29.7939,-20.4619,-58.8218,0,-54.0054	1/1:62:0,62,0:0:0:62,0:2212,0:-134.739,-18.6639,0,-134.739,-18.6639,-134.739	1/1:41:0,41,0:0:0:41,0:1455,0:-90.1028,-12.3422,0,-90.1028,-12.3422,-90.1028	1/1:46:0,46,0:0:0:46,0:1633,0:-109.196,-13.8474,0,-109.196,-13.8474,-109.196	1/2:9:0,5,4:0:0:5,4:180,108:-14.7802,-7.67367,-6.16852,-7.32519,0,-6.12107	1/2:50:0,28,22:0:0:28,22:996,504:-76.6716,-32.9982,-24.5694,-43.8759,0,-37.2532	1/2:15:0,7,7:0:0:7,7:252,203:-28.8783,-14.2952,-12.188,-14.6105,0,-12.5033	1/2:9:0,2,7:0:0:2,7:72,161:-13.8489,-10.6932,-10.0911,-3.36245,0,-1.25524	1/1:56:0,56,0:0:0:56,0:1997,0:-111.641,-16.8577,0,-111.641,-16.8577,-111.641	1/2:11:0,9,2:0:0:9,2:313,54:-17.369,-3.95681,-1.24754,-13.6448,0,-13.0427	1/1:1:0,1,0:0:0:1,0:36,0:-1.59579,-0.30103,0,-1.59579,-0.30103,-1.59579	1/2:7:0,1,6:0:0:1,6:36,174:-14.5731,-12.4897,-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chr10	1121533	.	A	T	3887.44	PASS	AB=0.286515;ABP=3249.89;AC=48;AF=0.255319;AN=188;AO=2424;CIGAR=1X;DP=13294;DPB=13294;DPRA=1.82458;EPP=5223.32;EPPR=23550.5;GTI=22;LEN=1;MEANALT=1.02985;MQM=23.495;MQMR=39.2356;NS=94;NUMALT=1;ODDS=0.219249;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86542;QR=388874;RO=10868;RPL=2419;RPP=5223.32;RPPR=23550.5;RPR=5;RUN=1;SAF=0;SAP=5266.66;SAR=2424;SRF=0;SRP=23602.6;SRR=10868;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:84:63,21:63:2242:21:744:-18.1834,0,-132.216	0/0:208:207,1:207:7408:1:36:0,-60.3354,-559.267	0/1:244:180,64:180:6440:64:2304:-60.3168,0,-364.55	0/1:420:321,99:321:11417:99:3556:-76.9229,0,-649.299	0/1:148:90,58:90:3228:58:2080:-74.7139,0,-191.03	0/1:92:71,21:71:2552:21:741:-14.4533,0,-168.176	0/1:258:161,97:161:5780:97:3464:-124.991,0,-343.893	0/1:240:185,55:185:6593:55:1968:-40.8458,0,-378.603	0/1:178:129,49:129:4611:49:1740:-49.4672,0,-263.495	0/1:177:138,39:138:4944:39:1369:-25.6425,0,-265.659	0/1:65:20,45:20:711:45:1605:-72.8828,0,-37.3866	0/1:122:77,45:77:2750:45:1608:-55.1518,0,-163.18	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.036	0/0:64:63,1:63:2247:1:36:0,-16.9871,-198.881	0/0:85:85,0:85:3056:0:0:0,-25.5875,-269.508	0/0:69:69,0:69:2476:0:0:0,-20.7711,-220.123	0/1:101:64,37:64:2295:37:1312:-44.6185,0,-138.591	0/0:76:76,0:76:2715:0:0:0,-22.8783,-242.916	0/1:59:42,17:42:1512:17:612:-17.4131,0,-92.4825	0/1:471:387,84:387:13859:84:2963:-30.4617,0,-807.209	0/1:245:178,67:178:6372:67:2356:-62.0343,0,-365.45	0/1:186:141,45:141:5046:45:1608:-35.6636,0,-281.539	0/1:136:111,25:111:3980:25:900:-10.3385,0,-233.547	0/1:232:173,59:173:6181:59:2120:-49.2447,0,-333.901	0/1:123:87,36:87:3116:36:1287:-38.083,0,-176.669	0/0:383:383,0:383:13732:0:0:0,-115.294,-967.835	0/0:234:234,0:234:8366:0:0:0,-70.441,-622.271	0/1:72:48,24:48:1716:24:864:-29.9031,0,-107.011	0/1:514:364,150:364:13040:150:5370:-152.898,0,-768.75	0/1:213:145,68:145:5200:68:2440:-76.6886,0,-285.532	0/0:209:204,5:204:7291:5:180:0,-53.6099,-501.066	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/1:25:12,13:12:432:13:453:-19.0109,0,-17.5805	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59457	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59457	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7701	0/0:179:179,0:179:6414:0:0:0,-53.8844,-569.862	0/1:290:186,103:186:6659:103:3696:-122.929,0,-390.884	0/0:38:37,1:37:1324:1:32:0,-9.19039,-117.123	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.381	0/1:280:203,77:203:7245:77:2760:-75.2505,0,-395.783	0/1:50:28,22:28:1008:22:784:-29.1117,0,-63.9802	0/1:219:173,46:173:6187:46:1641:-29.4859,0,-373.142	0/1:111:85,26:85:3030:26:936:-18.2752,0,-205.858	0/0:58:57,1:57:2031:1:21:0,-15.9028,-180.071	0/0:83:83,0:83:2959:0:0:0,-24.9855,-238.233	0/0:158:157,1:157:5627:1:36:0,-45.3796,-414.733	0/1:325:257,67:257:9212:67:2404:-41.9325,0,-525.034	0/0:121:121,0:121:4321:0:0:0,-36.4246,-345.459	0/0:133:130,3:130:4648:3:108:0,-34.5717,-316.574	0/0:179:178,1:178:6341:1:36:0,-51.6055,-477.706	0/1:7:2,5:2:72:5:165:-9.23065,0,-2.75433	0/1:193:146,47:146:5223:47:1657:-39.457,0,-322.06	0/1:40:22,18:22:788:18:644:-26.1852,0,-46.4557	0/1:14:8,6:8:284:6:216:-10.7383,0,-14.8558	0/0:181:179,2:179:6384:2:72:0,-48.05,-499.745	0/1:70:54,16:54:1932:16:576:-11.8847,0,-119.398	0/0:10:9,1:9:320:1:36:0,-2.01128,-18.6068	0/1:30:19,11:19:684:11:392:-11.6969,0,-33.4238	0/0:103:102,1:102:3660:1:36:0,-27.8185,-270.318	0/1:148:78,70:78:2795:70:2512:-99.7708,0,-169.62	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0514	0/0:319:274,45:274:9832:45:1616:0,-3.31476,-546.163	0/0:259:256,3:256:9160:3:108:0,-71.0916,-629.696	0/0:63:63,0:63:2256:0:0:0,-18.9649,-167.103	0/0:122:121,1:121:4348:1:36:0,-34.3521,-328.595	0/1:299:250,49:250:8938:49:1752:-8.1702,0,-531.898	0/0:130:130,0:130:4631:0:0:0,-39.1339,-340.11	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.0177	0/0:114:114,0:114:4077:0:0:0,-34.3174,-312.444	0/0:94:93,1:93:3317:1:36:0,-24.9507,-294.732	0/0:17:17,0:17:612:0:0:0,-5.11751,-43.9991	0/1:191:88,103:88:3164:103:3670:-150.587,0,-175.798	0/0:71:71,0:71:2540:0:0:0,-21.3731,-189.564	0/0:184:183,1:183:6533:1:21:0,-53.5419,-507.088	0/0:203:203,0:203:7272:0:0:0,-61.1091,-551.436	0/0:96:96,0:96:3431:0:0:0,-28.8989,-293.374	0/0:138:135,3:135:4848:3:108:0,-35.1613,-333.097	0/1:13:9,4:9:324:4:129:-4.15769,0,-18.5304	0/1:268:199,69:199:7128:69:2480:-61.0422,0,-445.533	0/0:120:119,1:119:4263:1:36:0,-33.8447,-323.357	0/1:408:329,79:329:11752:79:2813:-40.9554,0,-709.487	0/0:76:76,0:76:2732:0:0:0,-22.8783,-243.572	0/0:85:85,0:85:3048:0:0:0,-25.5875,-272.233	0/1:128:88,40:88:3156:40:1436:-44.0135,0,-209.895	0/1:223:149,74:149:5348:74:2652:-86.875,0,-333.155	0/0:36:36,0:36:1296:0:0:0,-10.8371,-115.514	0/1:108:73,35:73:2607:35:1252:-37.9468,0,-158.34	0/1:99:59,40:59:2115:40:1436:-52.4436,0,-123.511	0/1:39:20,19:20:708:19:680:-27.3424,0,-41.2141	0/1:109:58,51:58:2071:51:1812:-71.3282,0,-115.306	0/1:135:80,55:80:2838:55:1972:-71.6071,0,-165.033	0/0:178:178,0:178:6370:0:0:0,-53.5833,-451.356	0/0:110:109,1:109:3903:1:21:0,-31.4236,-347.601
chr10	1144510	.	G	T	60807.6	PASS	AB=0.531316;ABP=59.3162;AC=51;AF=0.271277;AN=188;AO=3520;CIGAR=1X;DP=12056;DPB=12056;DPRA=1.14914;EPP=7646.59;EPPR=18534.4;GTI=0;LEN=1;MEANALT=1.03571;MQM=59.3196;MQMR=59.9237;NS=94;NUMALT=1;ODDS=1.08824;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126098;QR=304453;RO=8534;RPL=0;RPP=7646.59;RPPR=18534.4;RPR=3520;RUN=1;SAF=3520;SAP=7646.59;SAR=0;SRF=8534;SRP=18534.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:17,24:17:608:24:864:-65.7403,0,-42.7098	0/0:167:167,0:167:5924:0:0:0,-50.272,-533.268	0/1:134:62,72:62:2179:72:2584:-192.325,0,-156.033	0/1:236:114,122:114:4062:122:4347:-318.937,0,-294.72	0/1:99:57,42:57:2033:42:1495:-104.82,0,-153.394	0/1:64:31,33:31:1108:33:1184:-87.5264,0,-80.7651	0/1:191:102,89:102:3581:89:3196:-230.351,0,-264.997	0/1:176:89,87:89:3149:87:3132:-229.025,0,-230.652	0/1:86:41,45:41:1453:45:1616:-119.779,0,-105.175	0/1:127:70,57:70:2486:57:2031:-144.805,0,-185.757	0/1:132:60,72:60:2137:72:2575:-192.212,0,-152.86	0/1:83:45,38:45:1601:38:1364:-97.9951,0,-119.384	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:170:170,0:170:6100:0:0:0,-51.1751,-548.339	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.765	0/0:73:73,0:73:2593:0:0:0,-21.9752,-233.618	0/1:106:49,57:49:1764:57:2044:-151.996,0,-127.135	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.34	0/1:65:34,31:34:1216:31:1103:-79.9412,0,-90.175	0/1:279:117,162:117:4171:162:5818:-439.053,0,-291.584	0/1:198:87,111:87:3094:111:3992:-298.841,0,-219.077	0/1:191:69,122:69:2442:122:4371:-334.584,0,-162.535	0/1:45:18,27:18:648:27:968:-73.8736,0,-45.1055	0/1:118:57,61:57:2007:61:2188:-161.603,0,-145.376	0/1:115:36,79:36:1292:79:2820:-219.202,0,-81.9653	0/0:410:410,0:410:14647:0:0:0,-123.422,-1317.96	0/0:252:252,0:252:8957:0:0:0,-75.8596,-806.111	0/1:34:13,21:13:468:21:748:-57.4103,0,-32.2246	0/1:392:207,185:207:7380:185:6619:-476.647,0,-546.219	0/1:182:87,95:87:3113:95:3412:-251.835,0,-224.666	0/0:162:162,0:162:5760:0:0:0,-48.7669,-518.512	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:215:215,0:215:7648:0:0:0,-64.7214,-688.352	0/1:289:122,167:122:4350:167:5986:-451.538,0,-304.675	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.233	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:206:79,127:79:2832:127:4547:-347.346,0,-193.106	0/1:63:32,31:32:1137:31:1116:-81.7382,0,-83.6721	0/1:203:90,113:90:3209:113:4047:-303.303,0,-227.905	0/1:61:30,31:30:1072:31:1116:-82.3843,0,-78.4273	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.281	0/0:95:94,1:94:3376:1:36:0,-24.9996,-299.962	0/0:125:125,0:125:4458:0:0:0,-37.6287,-401.388	0/1:281:138,143:138:4930:143:5140:-378.026,0,-358.632	0/0:154:154,0:154:5498:0:0:0,-46.3586,-494.942	0/0:214:214,0:214:7665:0:0:0,-64.4204,-689.881	0/0:213:213,0:213:7629:0:0:0,-64.1194,-686.642	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:232:116,116:116:4153:116:4168:-304.903,0,-304.112	0/1:63:32,31:32:1114:31:1100:-79.5068,0,-81.5981	0/1:17:6,11:6:216:11:392:-30.5007,0,-14.673	0/0:139:139,0:139:4913:0:0:0,-41.8432,-442.309	0/1:14:4,10:4:144:10:360:-28.5283,0,-9.0992	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:31:11,20:11:396:20:720:-55.7945,0,-26.6462	0/0:159:159,0:159:5685:0:0:0,-47.8638,-511.768	0/1:200:92,108:92:3285:108:3884:-289.449,0,-235.662	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:257:123,134:123:4378:134:4778:-352.522,0,-316.828	0/0:285:284,1:284:10136:1:36:0,-82.1953,-908.569	0/0:120:120,0:120:4255:0:0:0,-36.1236,-382.636	0/0:90:90,0:90:3201:0:0:0,-27.0927,-288.226	0/1:180:89,90:89:3132:90:3211:-235.101,0,-228.003	0/0:204:201,3:201:7224:3:108:0,-51.3349,-640.03	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:96:96,0:96:3406:0:0:0,-28.8989,-306.753	0/0:127:127,0:127:4522:0:0:0,-38.2308,-407.146	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/1:186:87,99:87:3101:99:3556:-264.167,0,-223.135	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:265:263,2:263:9410:2:72:0,-72.9474,-839.986	0/0:178:178,0:178:6392:0:0:0,-53.5833,-575.366	0/0:251:251,0:251:8962:0:0:0,-75.5585,-806.527	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.664	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:136:55,81:55:1942:81:2908:-220.853,0,-134.112	0/0:126:126,0:126:4479:0:0:0,-37.9298,-403.259	0/1:300:148,152:148:5301:152:5443:-399.634,0,-386.914	0/0:121:120,1:120:4285:1:36:0,-32.8264,-382.226	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:84:37,46:37:1320:46:1648:-123.295,0,-93.7956	0/1:133:66,67:66:2359:67:2404:-176.362,0,-172.526	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.087	0/1:97:54,43:54:1936:43:1519:-107.723,0,-145.316	0/1:85:43,42:43:1540:42:1512:-110.755,0,-113.306	0/1:108:47,61:47:1692:61:2184:-164.125,0,-120.056	0/1:169:90,79:90:3202:79:2821:-202.212,0,-237.527	0/1:77:22,55:22:788:55:1951:-151.723,0,-48.0655	0/0:142:142,0:142:5066:0:0:0,-42.7463,-456.077	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.929
chr10	1144642	.	C	T	141385	PASS	AB=0.477574;ABP=27.0668;AC=135;AF=0.725806;AN=186;AO=6860;CIGAR=1X;DP=9748;DPB=9748;DPRA=0;EPP=14899.3;EPPR=6267.71;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.981;MQMR=59.9986;NS=93;NUMALT=1;ODDS=0.210227;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245271;QR=102762;RO=2885;RPL=6860;RPP=14899.3;RPPR=6267.71;RPR=0;RUN=1;SAF=0;SAP=14899.3;SAR=6860;SRF=0;SRP=6267.71;SRR=2885;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:82:39,43:39:1400:43:1529:-113.217,0,-101.615	1/1:142:3,139:3:108:139:4974:-437.73,-32.6711,0	0/1:163:76,86:76:2709:86:3090:-229.2,0,-194.926	0/1:199:106,93:106:3797:93:3325:-239.561,0,-282.021	0/1:122:63,59:63:2230:59:2090:-151.641,0,-164.235	0/1:65:35,30:35:1256:30:1080:-77.9463,0,-93.7783	0/1:109:62,47:62:2179:47:1684:-119.034,0,-163.559	0/1:135:77,58:77:2745:58:2054:-144.489,0,-206.652	0/1:131:48,83:48:1683:83:2969:-228.006,0,-112.316	0/1:99:51,48:51:1813:48:1728:-126.003,0,-133.648	0/1:27:12,15:12:428:15:531:-39.9941,0,-30.731	0/1:88:45,43:45:1601:43:1544:-112.762,0,-117.888	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:54:27,27:27:953:27:968:-71.1817,0,-69.8277	1/1:44:0,44:0:0:44:1556:-140.328,-13.2453,0	0/1:41:25,16:25:900:16:576:-39.8328,0,-68.9788	0/1:259:135,124:135:4781:124:4445:-322.253,0,-352.476	0/1:177:84,93:84:2960:93:3324:-246.094,0,-213.346	0/1:219:132,87:132:4706:87:3087:-212.129,0,-357.773	0/1:89:37,52:37:1313:52:1808:-136.202,0,-91.678	0/1:270:141,129:141:5045:129:4617:-334.414,0,-372.916	0/1:112:63,49:63:2264:49:1764:-125.328,0,-170.307	1/1:333:0,333:0:0:333:11937:-1074.18,-100.243,0	1/1:231:0,231:0:0:231:8278:-744.968,-69.5379,0	0/1:42:20,22:20:720:22:792:-58.9624,0,-52.4855	0/1:344:156,188:156:5593:188:6737:-502.847,0,-399.935	0/1:78:46,32:46:1652:32:1152:-80.5098,0,-125.488	1/1:95:0,95:0:0:95:3405:-306.662,-28.5979,0	1/1:2:0,2:0:0:2:72:-6.8351,-0.60206,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:221:1,220:1:36:220:7901:-707.512,-62.9294,0	0/1:256:136,120:136:4846:120:4267:-307.142,0,-359.229	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:117:57,60:57:2033:60:2153:-158.816,0,-148.02	0/1:36:20,16:20:720:16:572:-40.9763,0,-54.2917	0/1:197:87,110:87:3102:110:3907:-292.518,0,-220.101	0/1:66:26,40:26:932:40:1440:-110.03,0,-64.3309	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:143:0,143:0:0:143:5119:-460.85,-43.0473,0	1/1:113:1,112:1:36:112:4006:-357.129,-30.4181,0	0/1:145:80,65:80:2823:65:2307:-164.239,0,-210.656	1/1:125:1,124:1:36:124:4429:-394.753,-34.0305,0	1/1:111:0,111:0:0:111:3988:-359.109,-33.4143,0	1/1:258:0,258:0:0:258:9222:-829.945,-77.6657,0	0/1:12:6,6:6:216:6:197:-14.439,0,-16.1782	0/1:100:57,43:57:2036:43:1540:-108.79,0,-153.409	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:128:0,128:0:0:128:4580:-412.361,-38.5318,0	0/1:31:15,16:15:540:16:561:-41.4852,0,-39.6046	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:24:11,13:11:396:13:453:-33.8749,0,-28.758	1/1:55:0,55:0:0:55:1965:-177.123,-16.5567,0	0/1:121:65,56:65:2332:56:2001:-143.937,0,-173.715	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:221:103,117:103:3689:117:4155:-307.544,0,-265.624	1/1:314:2,312:2:72:312:11147:-996.277,-87.6867,0	1/1:84:0,84:0:0:84:3014:-271.49,-25.2865,0	1/1:104:1,103:1:36:103:3670:-326.547,-27.7088,0	0/1:181:112,69:112:3998:69:2435:-164.915,0,-305.52	1/1:125:1,124:1:36:124:4424:-394.731,-34.0305,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	1/1:91:0,91:0:0:91:3259:-293.53,-27.3937,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:114:83,31:83:2924:31:1116:-66.4343,0,-229.073	1/1:102:0,102:0:0:102:3630:-326.903,-30.7051,0	1/1:86:0,86:0:0:86:3078:-277.247,-25.8886,0	1/1:164:0,164:0:0:164:5888:-530.028,-49.3689,0	1/1:104:0,104:0:0:104:3713:-334.37,-31.3071,0	1/1:107:0,106:0:0:106:3816:-343.424,-31.9092,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:130:75,55:75:2658:55:1946:-136.278,0,-200.33	1/1:71:0,71:0:0:71:2541:-228.939,-21.3731,0	0/1:294:161,133:161:5678:133:4731:-337.444,0,-422.635	1/1:84:0,84:0:0:84:2993:-269.601,-25.2865,0	1/1:53:0,53:0:0:53:1874:-168.935,-15.9546,0	0/1:88:49,39:49:1760:39:1370:-97.1039,0,-132.193	0/1:149:70,79:70:2475:79:2844:-211.344,0,-178.146	1/1:44:0,44:0:0:44:1569:-141.5,-13.2453,0	0/1:69:45,24:45:1608:24:864:-57.3115,0,-124.239	0/1:69:28,41:28:1008:41:1476:-112.365,0,-70.2653	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:52:25,27:25:885:27:972:-72.1443,0,-64.313	0/1:61:39,22:39:1395:22:792:-53.2428,0,-107.486	1/1:163:0,163:0:0:163:5845:-526.159,-49.0679,0	1/1:109:0,109:0:0:109:3897:-350.922,-32.8123,0
chr10	1179561	.	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chr10	1190860	.	A	G	144716	PASS	AB=0.589834;ABP=320.198;AC=134;AF=0.728261;AN=184;AO=6932;CIGAR=1X;DP=8801;DPB=8801;DPRA=48.3462;EPP=15047;EPPR=4035.44;GTI=3;LEN=1;MEANALT=1.07692;MQM=59.9639;MQMR=59.9618;NS=92;NUMALT=1;ODDS=0.36607;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246534;QR=65138;RO=1861;RPL=6931;RPP=15047;RPPR=4044.12;RPR=1;RUN=1;SAF=6932;SAP=15055.7;SAR=0;SRF=1860;SRP=4035.44;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:8,11:8:280:11:392:-29.9005,0,-19.8197	1/1:133:0,133:0:0:133:4728:-425.68,-40.037,0	0/1:94:36,58:36:1268:58:2056:-157.012,0,-86.1259	0/1:183:79,103:79:2761:103:3660:-274.556,0,-193.684	0/1:74:36,38:36:1241:38:1347:-99.2533,0,-89.7133	0/1:40:16,24:16:560:24:828:-62.7929,0,-38.6875	0/1:72:32,40:32:1128:40:1440:-108.224,0,-80.1541	0/1:118:41,77:41:1429:77:2734:-210.781,0,-93.3822	0/1:110:31,79:31:1074:79:2793:-218.495,0,-63.8532	0/1:75:36,39:36:1264:39:1387:-102.551,0,-91.4853	0/1:32:13,19:13:452:19:671:-51.0828,0,-31.3781	0/1:62:22,40:22:772:40:1427:-110.063,0,-51.1374	1/1:52:0,52:0:0:52:1825:-164.525,-15.6536,0	1/1:65:0,65:0:0:65:2306:-207.801,-19.567,0	1/1:54:0,54:0:0:54:1916:-172.715,-16.2556,0	1/1:62:0,62:0:0:62:2193:-197.631,-18.6639,0	0/1:96:39,57:39:1331:57:2024:-153.531,0,-91.188	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:23:8,15:8:271:15:536:-41.6511,0,-17.7957	0/1:203:58,145:58:2040:145:5192:-406.309,0,-122.747	0/1:148:60,88:60:2099:88:3137:-238.002,0,-144.628	0/1:207:121,86:121:4250:86:3040:-211.516,0,-320.371	0/1:69:31,38:31:1096:38:1356:-101.569,0,-78.1789	0/1:210:76,133:76:2708:133:4692:-359.169,0,-180.69	0/1:45:17,28:17:600:28:1008:-77.49,0,-40.7828	1/1:384:0,383:0:0:383:13591:-1222.74,-115.294,0	1/1:248:0,248:0:0:248:8809:-792.8,-74.6554,0	0/1:37:16,21:16:541:21:756:-57.2291,0,-37.8712	0/1:234:75,159:75:2617:159:5640:-437.283,0,-165.068	0/1:93:40,53:40:1404:53:1885:-141.932,0,-98.6614	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:173:0,173:0:0:173:6096:-548.737,-52.0782,0	0/1:148:55,92:55:1895:92:3281:-250.895,0,-126.214	1/1:79:0,79:0:0:79:2805:-252.689,-23.7814,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:219:92,126:92:3237:126:4498:-339.113,0,-225.679	0/1:12:7,5:7:248:5:171:-12.1131,0,-19.0518	0/1:117:49,68:49:1735:68:2431:-183.717,0,-121.209	0/1:72:33,39:33:1147:39:1404:-104.985,0,-81.8609	1/1:65:0,65:0:0:65:2250:-202.755,-19.567,0	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0	1/1:145:0,145:0:0:145:5165:-464.991,-43.6494,0	0/1:136:40,96:40:1408:96:3430:-267.973,0,-86.0771	1/1:89:0,89:0:0:89:3179:-286.333,-26.7917,0	1/1:129:0,129:0:0:129:4614:-415.423,-38.8329,0	1/1:216:0,216:0:0:216:7621:-685.907,-65.0225,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:119:45,74:45:1538:74:2652:-203.104,0,-102.884	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	0/1:8:4,4:4:135:4:144:-10.9054,0,-10.0743	1/1:141:0,141:0:0:141:5047:-454.375,-42.4452,0	0/1:49:15,34:15:524:34:1210:-94.4558,0,-32.7392	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:11:5,6:5:172:6:212:-16.1135,0,-12.5066	1/1:60:0,60:0:0:60:2124:-191.426,-18.0618,0	0/1:82:28,54:28:987:54:1922:-148.571,0,-64.4562	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:275:91,184:91:3189:184:6578:-509.319,0,-204.453	1/1:178:0,176:0:0:176:6293:-566.103,-52.9813,0	1/1:52:0,52:0:0:52:1837:-165.608,-15.6536,0	1/1:95:0,95:0:0:95:3399:-306.124,-28.5979,0	0/1:140:63,77:63:2224:77:2741:-204.788,0,-158.281	1/1:100:2,98:2:72:98:3491:-307.375,-23.2663,0	1/1:15:0,15:0:0:15:540:-48.9319,-4.51545,0	1/1:64:1,63:1:36:63:2245:-198.713,-15.6676,0	1/1:62:0,62:0:0:62:2194:-197.725,-18.6639,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:66:37,29:37:1303:29:1032:-73.3255,0,-97.7026	1/1:65:0,65:0:0:65:2282:-205.532,-19.567,0	1/1:83:0,83:0:0:83:2964:-266.975,-24.9855,0	1/1:178:0,178:0:0:178:6361:-572.58,-53.5833,0	1/1:331:0,331:0:0:331:11806:-1062.41,-99.6409,0	1/1:128:2,126:2:72:126:4493:-397.702,-31.6951,0	0/1:6:3,3:3:104:3:93:-6.87055,0,-7.89663	0/1:125:49,76:49:1736:76:2692:-204.895,0,-118.896	1/1:147:1,146:1:36:146:5188:-463.463,-40.6531,0	0/1:154:85,68:85:2995:68:2428:-172.447,0,-223.454	1/1:103:0,103:0:0:103:3659:-329.513,-31.0061,0	1/1:48:0,48:0:0:48:1693:-152.654,-14.4494,0	0/1:110:59,51:59:2035:51:1815:-130.517,0,-150.306	0/1:135:58,77:58:2047:77:2730:-205.304,0,-143.863	1/1:40:0,40:0:0:40:1407:-126.926,-12.0412,0	0/1:82:35,47:35:1236:47:1662:-125.182,0,-86.8598	0/1:86:45,41:45:1545:41:1460:-105.807,0,-113.45	0/1:26:11,15:11:376:15:540:-41.1098,0,-26.3425	0/1:39:17,22:17:600:22:771:-57.9655,0,-42.589	0/1:57:31,26:31:1072:26:932:-67.0402,0,-79.6264	1/1:139:1,138:1:36:138:4935:-440.702,-38.2449,0	1/1:83:1,82:1:36:82:2914:-258.898,-21.3872,0
chr10	1190863	.	A	G	35213.6	PASS	AB=0.448893;ABP=114.655;AC=50;AF=0.271739;AN=184;AO=2216;CIGAR=1X;DP=9254;DPB=9254;DPRA=0.991457;EPP=4806.31;EPPR=15281.5;GTI=2;LEN=1;MEANALT=1.03846;MQM=59.9621;MQMR=59.9596;NS=92;NUMALT=1;ODDS=1.30948;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78691;QR=252057;RO=7036;RPL=2216;RPP=4814.99;RPPR=15281.5;RPR=0;RUN=1;SAF=2215;SAP=4806.31;SAR=1;SRF=7036;SRP=15281.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:136:136,0:136:4884:0:0:0,-40.9401,-439.711	0/1:101:59,42:59:2116:42:1490:-103.989,0,-160.301	0/1:199:106,92:106:3808:92:3285:-235.905,0,-282.953	0/1:77:41,36:41:1476:36:1260:-90.5203,0,-109.957	0/1:41:24,17:24:864:17:612:-43.0712,0,-65.7403	0/1:76:41,35:41:1472:35:1231:-88.2127,0,-109.898	0/1:131:80,51:80:2864:51:1800:-122.844,0,-218.562	0/1:113:81,32:81:2916:32:1148:-69.6134,0,-228.658	0/1:84:41,42:41:1468:42:1503:-110.219,0,-107.071	0/1:36:20,16:20:716:16:567:-40.5236,0,-53.9306	0/1:70:42,28:42:1512:28:977:-67.1682,0,-115.303	0/0:53:52,1:52:1859:1:36:0,-12.3563,-163.991	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.362	0/1:108:54,54:54:1920:54:1918:-140.385,0,-140.563	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:28:15,13:15:531:13:456:-32.9444,0,-39.6931	0/1:215:140,75:140:5020:75:2653:-174.293,0,-387.222	0/1:166:89,77:89:3177:77:2738:-196.693,0,-236.182	0/1:220:83,137:83:2984:137:4908:-375.628,0,-202.561	0/1:79:39,40:39:1395:40:1436:-105.756,0,-102.067	0/1:222:134,88:134:4799:88:3124:-214.557,0,-365.232	0/1:53:31,22:31:1116:22:779:-54.4775,0,-84.7971	0/0:392:392,0:392:14059:0:0:0,-118.004,-1265.07	0/0:246:246,0:246:8828:0:0:0,-74.0534,-794.503	0/1:42:20,22:20:720:22:774:-57.337,0,-52.4855	0/1:250:161,89:161:5776:89:3153:-208.468,0,-444.693	0/1:103:55,48:55:1951:48:1707:-122.909,0,-144.859	0/0:74:74,0:74:2634:0:0:0,-22.2762,-237.306	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:175:175,0:175:6269:0:0:0,-52.6802,-564.213	0/1:166:97,69:97:3468:69:2429:-168.892,0,-262.353	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:235:125,110:125:4466:110:3904:-280.811,0,-331.367	0/1:17:5,12:5:176:12:428:-33.7413,0,-11.0675	0/1:127:67,60:67:2412:60:2154:-155.876,0,-178.615	0/1:80:39,41:39:1404:41:1454:-107.072,0,-102.577	0/0:67:67,0:67:2383:0:0:0,-20.169,-214.728	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:148:148,0:148:5316:0:0:0,-44.5524,-478.571	0/1:145:98,47:98:3524:47:1679:-107.747,0,-273.717	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.26	0/0:132:132,0:132:4713:0:0:0,-39.736,-424.329	0/0:216:216,0:216:7724:0:0:0,-65.0225,-694.92	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:132:75,57:75:2687:57:2035:-143.686,0,-202.338	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:8:4,4:4:140:4:140:-10.5363,0,-10.5363	0/0:146:146,0:146:5240:0:0:0,-43.9504,-471.736	0/1:50:35,15:35:1260:15:540:-33.885,0,-98.654	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/1:83:54,29:54:1932:29:1029:-67.9356,0,-149.171	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:299:189,110:189:6780:110:3915:-262.536,0,-520.263	0/0:183:183,0:183:6564:0:0:0,-55.0885,-590.838	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/1:162:80,82:80:2860:82:2913:-213.638,0,-208.87	0/0:105:103,2:103:3683:2:72:0,-24.7714,-324.806	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4472	0/0:64:64,0:64:2264:0:0:0,-19.2659,-204.021	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:68:30,38:30:1076:38:1351:-101.42,0,-76.6828	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.484	0/0:85:85,0:85:3034:0:0:0,-25.5875,-273.274	0/0:177:177,0:177:6339:0:0:0,-53.2823,-570.596	0/0:327:327,0:327:11726:0:0:0,-98.4368,-1055.2	0/0:130:128,2:128:4592:2:72:0,-32.2972,-406.607	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:138:75,63:75:2692:63:2236:-159.96,0,-200.982	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.448	0/1:161:70,91:70:2520:91:3230:-242.456,0,-178.585	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/1:114:50,64:50:1768:64:2271:-170.335,0,-125.083	0/1:144:79,65:79:2832:65:2293:-163.282,0,-211.77	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.177	0/1:85:48,37:48:1728:37:1283:-90.1796,0,-130.218	0/1:106:46,60:46:1640:60:2128:-159.877,0,-115.489	0/1:28:15,13:15:536:13:455:-32.8531,0,-40.146	0/1:45:22,23:22:788:23:815:-60.1244,0,-57.6938	0/1:68:26,42:26:927:42:1486:-113.563,0,-63.2773	0/0:139:139,0:139:4984:0:0:0,-41.8432,-448.707	0/0:83:83,0:83:2962:0:0:0,-24.9855,-266.812
chr10	1190932	.	C	T	31768.5	PASS	AB=0.50081;ABP=3.0314;AC=49;AF=0.260638;AN=188;AO=1861;CIGAR=1X;DP=6948;DPB=6948;DPRA=1.11726;EPP=3966.33;EPPR=10745;GTI=0;LEN=1;MEANALT=1.07407;MQM=59.9871;MQMR=59.989;NS=94;NUMALT=1;ODDS=3.82903;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66631;QR=181288;RO=5078;RPL=1852;RPP=3966.33;RPPR=10745;RPR=9;RUN=1;SAF=0;SAP=4044.12;SAR=1861;SRF=0;SRP=11029.7;SRR=5078;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:19,27:19:675:27:968:-73.59,0,-47.2296	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:67:25,42:25:883:42:1503:-115.395,0,-59.6184	0/1:134:61,73:61:2188:73:2604:-194.271,0,-156.848	0/1:72:43,29:43:1500:29:1040:-72.2402,0,-113.616	0/1:66:27,39:27:972:39:1400:-106.431,0,-67.9299	0/1:47:21,26:21:752:26:936:-70.4111,0,-53.8578	0/1:137:83,54:83:2975:54:1929:-132.644,0,-226.741	0/1:84:35,49:35:1260:49:1756:-133.037,0,-88.419	0/1:52:26,26:26:932:26:932:-68.5453,0,-68.5453	0/1:62:33,29:33:1167:29:1040:-75.2505,0,-86.6725	0/1:115:70,45:70:2482:45:1597:-109.399,0,-189.015	0/0:90:90,0:90:3201:0:0:0,-27.0927,-288.313	0/0:46:45,0:45:1611:0:0:0,-13.5463,-144.92	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.04	0/0:45:45,0:45:1594:0:0:0,-13.5463,-143.749	0/1:26:10,16:10:360:16:576:-44.3482,0,-24.9175	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:34:15,19:15:536:19:680:-51.2941,0,-38.3398	0/1:83:45,38:45:1607:38:1360:-97.7151,0,-119.934	0/1:112:49,63:49:1744:63:2256:-169.588,0,-123.529	0/1:66:18,48:18:648:48:1720:-135.218,0,-38.7839	0/1:76:31,41:31:1108:41:1467:-110.292,0,-77.9973	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:80:51,28:51:1819:28:1004:-66.5347,0,-139.849	0/0:146:146,0:146:5220:0:0:0,-43.9504,-469.939	0/0:194:192,1:192:6863:1:36:0,-54.8603,-614.142	0/1:32:15,17:15:540:17:604:-45.0576,0,-39.3036	0/1:167:90,77:90:3236:77:2745:-197.019,0,-241.189	0/1:98:52,46:52:1860:46:1652:-119.468,0,-138.179	0/0:67:67,0:67:2364:0:0:0,-20.169,-213.017	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:156:156,0:156:5600:0:0:0,-46.9607,-504.12	0/1:81:40,41:40:1414:41:1464:-107.673,0,-103.172	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:112:55,57:55:1976:57:2040:-150.156,0,-144.399	0/1:47:27,20:27:968:20:720:-50.9804,0,-73.289	0/1:163:98,65:98:3468:65:2321:-160.081,0,-263.265	0/1:53:22,31:22:784:31:1104:-83.716,0,-54.9293	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:164:164,0:164:5840:0:0:0,-49.3689,-525.714	0/1:112:56,56:56:1997:56:2012:-147.638,0,-146.287	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:88:88,0:88:3137:0:0:0,-26.4906,-282.555	0/0:118:118,0:118:4227:0:0:0,-35.5215,-380.479	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:95:45,50:45:1607:50:1796:-133.324,0,-116.322	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/1:18:5,13:5:171:13:468:-37.0411,0,-10.3069	0/0:92:91,1:91:3255:1:36:0,-24.0965,-289.572	0/1:37:14,23:14:491:23:828:-63.706,0,-33.383	0/0:13:12,1:12:417:1:36:0,-0.315115,-34.2619	0/1:18:14,4:14:504:4:140:-7.52604,0,-40.2796	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:93:51,42:51:1832:42:1508:-108.019,0,-137.165	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:147:86,61:86:3065:61:2196:-153.631,0,-231.827	0/0:125:125,0:125:4484:0:0:0,-37.6287,-403.728	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/1:105:53,52:53:1900:52:1872:-137.151,0,-139.67	0/0:132:132,0:132:4698:0:0:0,-39.736,-422.979	0/0:58:56,2:56:2004:2:72:0,-10.623,-173.797	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:36:36,0:36:1278:0:0:0,-10.8371,-115.322	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/1:161:93,68:93:3308:68:2410:-168.689,0,-249.475	0/0:116:116,0:116:4139:0:0:0,-34.9195,-372.694	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.189	0/0:165:165,0:165:5899:0:0:0,-49.6699,-531.02	0/0:117:116,1:116:4135:1:36:0,-31.6222,-368.737	0/0:70:70,0:70:2487:0:0:0,-21.0721,-223.814	0/1:11:3,8:3:108:8:273:-21.5897,0,-6.76384	0/1:69:33,36:33:1171:36:1296:-96.1729,0,-84.9256	0/0:86:85,0:85:3042:0:0:0,-25.5875,-273.649	0/1:152:65,87:65:2302:87:3122:-235.449,0,-161.684	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.333	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.939	0/1:42:19,23:19:680:23:824:-61.8401,0,-48.8859	0/1:115:58,56:58:2072:56:2012:-146.807,0,-152.204	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:53:30,23:30:1068:23:819:-58.0776,0,-80.4775	0/1:64:27,37:27:964:37:1320:-99.836,0,-67.8109	0/1:49:19,30:19:684:30:1076:-82.4024,0,-47.1399	0/1:130:58,72:58:2061:72:2586:-193.855,0,-146.626	0/1:63:22,41:22:788:41:1467:-113.338,0,-52.2799	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:79:79,0:79:2803:0:0:0,-23.7814,-252.511
chr10	1191066	.	G	A	50057.8	PASS	AB=0.552425;ABP=127.55;AC=51;AF=0.274194;AN=186;AO=2900;CIGAR=1X;DP=9025;DPB=9025;DPRA=1.29565;EPP=6300.28;EPPR=13288.1;GTI=3;LEN=1;MEANALT=1;MQM=53.9172;MQMR=59.9837;NS=93;NUMALT=1;ODDS=0.667729;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103539;QR=217368;RO=6122;RPL=1;RPP=6291.6;RPPR=13279.4;RPR=2899;RUN=1;SAF=1;SAP=6291.6;SAR=2899;SRF=1;SRP=13288.1;SRR=6121;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:86:41,45:41:1459:45:1592:-117.06,0,-105.717	0/0:56:56,0:56:1994:0:0:0,-16.8577,-179.733	0/1:228:98,130:98:3499:130:4649:-346.673,0,-246.296	0/1:276:108,168:108:3824:168:5967:-453.15,0,-261.274	0/1:72:33,39:33:1175:39:1404:-104.55,0,-84.3828	0/1:33:10,23:10:360:23:810:-63.0764,0,-22.8103	0/1:87:49,38:49:1756:38:1353:-95.6858,0,-132.134	0/1:144:56,88:56:1995:88:3133:-237.461,0,-136.475	0/1:109:49,60:49:1747:60:2143:-159.725,0,-124.701	0/1:76:37,39:37:1320:39:1392:-102.35,0,-96.2237	0/1:64:31,33:31:1088:33:1175:-86.2809,0,-78.9606	0/1:128:56,72:56:1986:72:2551:-189.865,0,-140.481	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/0:47:47,0:47:1630:0:0:0,-14.1484,-146.981	0/0:76:76,0:76:2723:0:0:0,-22.8783,-245.312	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/1:33:23,10:23:815:10:347:-21.4692,0,-63.7368	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/1:29:13,16:13:468:16:572:-42.7746,0,-33.7298	0/1:207:118,89:118:4204:89:3172:-222.874,0,-316.227	0/1:168:77,91:77:2732:91:3256:-241.014,0,-195.549	0/1:194:80,114:80:2855:114:4100:-310.145,0,-198.788	0/1:166:78,88:78:2783:88:3131:-231.146,0,-200.74	0/1:88:31,57:31:1089:57:2044:-157.338,0,-71.8267	0/1:76:38,38:38:1364:38:1360:-99.2992,0,-100.182	0/0:214:213,1:213:7568:1:36:0,-60.8231,-677.565	0/0:254:253,0:253:8975:0:0:0,-76.1606,-807.374	0/1:30:13,17:13:460:17:603:-45.3318,0,-32.7045	0/1:343:155,188:155:5519:188:6740:-502.763,0,-393.585	0/1:110:48,62:48:1709:62:2220:-166.032,0,-120.98	0/0:102:102,0:102:3592:0:0:0,-30.7051,-323.484	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:37:14,23:14:504:23:819:-62.7793,0,-34.56	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:257:257,0:257:9053:0:0:0,-77.3647,-814.756	0/1:124:55,69:55:1968:69:2484:-185.772,0,-140.067	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	.:.:.:.:.:.:.:.	0/1:114:48,66:48:1720:66:2348:-176.501,0,-120.768	0/1:30:17,13:17:612:13:467:-33.1803,0,-46.3825	0/1:238:110,128:110:3915:128:4568:-338.138,0,-280.897	0/1:64:34,30:34:1186:30:1052:-75.61,0,-87.7748	0/0:72:72,0:72:2539:0:0:0,-21.6742,-228.757	0/0:143:143,0:143:5084:0:0:0,-43.0473,-457.708	0/0:129:129,0:129:4580:0:0:0,-38.8329,-412.367	0/1:150:72,78:72:2543:78:2745:-201.322,0,-183.967	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:150:150,0:150:5342:0:0:0,-45.1545,-480.912	1/1:9:0,9:0:0:9:324:-29.3917,-2.70927,0	0/1:105:35,70:35:1245:70:2507:-193.146,0,-80.7446	0/0:66:66,0:66:2313:0:0:0,-19.868,-208.428	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	0/0:145:144,0:144:5161:0:0:0,-43.3483,-464.268	0/1:55:27,28:27:949:28:1000:-73.1735,0,-69.1661	0/1:15:5,10:5:180:10:360:-28.2206,0,-12.0366	0/1:5:2,3:2:72:3:108:-8.51013,0,-5.33157	0/0:53:53,0:53:1862:0:0:0,-15.9546,-167.855	0/1:101:41,60:41:1458:60:2145:-162.566,0,-101.11	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:208:103,105:103:3672:105:3755:-275.157,0,-268.068	0/0:134:134,0:134:4784:0:0:0,-40.338,-430.715	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:180:84,96:84:2991:96:3432:-254.286,0,-215.237	0/0:147:145,2:145:5153:2:72:0,-37.4196,-457.079	0/0:35:34,1:34:1207:1:36:0,-6.94288,-105.342	0/0:65:65,0:65:2283:0:0:0,-19.5669,-205.73	0/0:51:50,0:50:1752:0:0:0,-15.0515,-157.641	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:175:76,99:76:2717:99:3556:-266.663,0,-192.092	0/0:78:76,2:76:2693:2:72:0,-16.6436,-235.775	0/0:101:101,0:101:3599:0:0:0,-30.404,-324.113	0/0:133:133,0:133:4742:0:0:0,-40.037,-426.939	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.868	0/0:87:87,0:87:3082:0:0:0,-26.1896,-277.601	0/1:10:2,8:2:72:8:288:-23.1993,0,-3.82642	0/1:72:30,42:30:1071:42:1494:-112.877,0,-75.0275	0/0:123:123,0:123:4340:0:0:0,-37.0267,-390.707	0/1:192:73,119:73:2606:119:4272:-325.689,0,-176.989	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/0:67:67,0:67:2353:0:0:0,-20.169,-212.026	0/1:64:31,33:31:1099:33:1184:-87.4096,0,-79.9535	0/1:151:72,79:72:2529:79:2832:-208.839,0,-182.404	0/0:35:35,0:35:1238:0:0:0,-10.536,-111.723	0/1:93:41,52:41:1442:52:1855:-138.768,0,-102.076	0/1:88:46,42:46:1610:42:1495:-107.84,0,-118.694	0/1:39:15,24:15:540:24:864:-66.0971,0,-37.1964	0/1:82:37,45:37:1266:45:1598:-118.762,0,-89.5513	0/1:78:23,55:23:809:55:1949:-151.903,0,-49.648	0/0:128:128,0:128:4520:0:0:0,-38.5318,-406.969	0/0:114:114,0:114:3992:0:0:0,-34.3174,-359.471
chr10	1191100	.	A	G	51325.6	PASS	AB=0.558779;ABP=161.28;AC=51;AF=0.274194;AN=186;AO=2963;CIGAR=1X;DP=9056;DPB=9056;DPRA=1.32656;EPP=6437.08;EPPR=13227.3;GTI=3;LEN=1;MEANALT=1.05769;MQM=53.9318;MQMR=59.9765;NS=93;NUMALT=1;ODDS=1.69133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105865;QR=217483;RO=6090;RPL=2963;RPP=6437.08;RPPR=13227.3;RPR=0;RUN=1;SAF=0;SAP=6437.08;SAR=2963;SRF=0;SRP=13227.3;SRR=6090;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:88:42,46:42:1496:46:1640:-120.61,0,-108.444	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/1:231:97,133:97:3460:133:4749:-354.333,0,-241.876	0/1:275:107,168:107:3809:168:5985:-454.542,0,-260.224	0/1:72:33,39:33:1184:39:1395:-103.799,0,-85.1942	0/1:35:11,24:11:396:24:860:-66.8591,0,-25.4467	0/1:89:48,41:48:1720:41:1464:-105.068,0,-128.294	0/1:146:58,88:58:2068:88:3121:-235.967,0,-142.441	0/1:111:47,64:47:1676:64:2265:-170.012,0,-117.713	0/1:81:38,43:38:1364:43:1548:-114.866,0,-98.6773	0/1:66:34,32:34:1203:32:1152:-84.028,0,-88.7071	0/1:130:56,74:56:1991:74:2640:-197.122,0,-140.33	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.53	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.965	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.581	0/1:33:24,9:24:860:9:324:-19.3083,0,-67.7878	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:30:14,16:14:504:16:576:-42.8302,0,-36.6672	0/1:210:119,91:119:4237:91:3264:-230.354,0,-318.294	0/1:170:77,93:77:2752:93:3324:-247.485,0,-196.747	0/1:196:80,116:80:2872:116:4156:-314.584,0,-199.715	0/1:174:80,93:80:2848:93:3313:-245.228,0,-204.283	0/1:87:29,58:29:1028:58:2080:-160.102,0,-66.6434	0/1:76:36,40:36:1292:40:1432:-105.735,0,-93.7055	0/0:211:210,1:210:7516:1:36:0,-59.9201,-672.885	0/0:257:257,0:257:9166:0:0:0,-77.3647,-824.914	0/1:29:12,17:12:432:17:608:-46.0151,0,-30.4913	0/1:343:152,191:152:5417:191:6828:-510.699,0,-384.408	0/1:111:48,63:48:1716:63:2229:-166.682,0,-121.307	0/0:101:101,0:101:3597:0:0:0,-30.404,-323.934	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:39:14,25:14:500:25:891:-68.6049,0,-33.596	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:257:257,0:257:9160:0:0:0,-77.3647,-824.379	0/1:126:55,71:55:1976:71:2541:-190.458,0,-140.185	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	.:.:.:.:.:.:.:.	0/1:117:48,68:48:1720:68:2399:-180.248,0,-119.806	0/1:30:17,13:17:608:13:468:-33.2473,0,-46.0211	0/1:248:113,135:113:4060:135:4832:-359.184,0,-290.93	0/1:65:33,32:33:1180:32:1139:-83.0959,0,-86.9411	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.24	0/0:139:139,0:139:4968:0:0:0,-41.8432,-447.27	0/0:129:129,0:129:4609:0:0:0,-38.8329,-414.973	0/1:153:73,80:73:2616:80:2845:-209.729,0,-189.63	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:74:74,0:74:2636:0:0:0,-22.2762,-237.488	0/0:148:148,0:148:5280:0:0:0,-44.5524,-475.338	1/1:9:0,9:0:0:9:324:-29.3917,-2.70927,0	0/1:108:36,72:36:1292:72:2569:-197.777,0,-84.0725	0/0:62:62,0:62:2189:0:0:0,-18.6639,-197.275	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	0/0:146:146,0:146:5232:0:0:0,-43.9504,-471.017	0/1:54:18,36:18:640:36:1288:-99.2521,0,-41.6737	0/1:17:7,10:7:252:10:360:-27.6186,0,-17.9114	0/1:6:3,3:3:108:3:108:-8.2091,0,-8.26899	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:103:42,61:42:1512:61:2188:-165.83,0,-105.369	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:205:103,102:103:3684:102:3664:-267.876,0,-270.052	0/0:134:134,0:134:4792:0:0:0,-40.338,-431.437	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:75:75,0:75:2680:0:0:0,-22.5772,-241.445	0/1:182:84,98:84:3004:98:3520:-261.381,0,-215.804	0/0:149:147,2:147:5230:2:72:0,-38.0217,-464.006	0/0:34:33,1:33:1184:1:36:0,-6.64185,-103.275	0/0:65:65,0:65:2316:0:0:0,-19.5669,-208.701	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:175:75,100:75:2688:100:3592:-269.706,0,-189.484	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.766	0/0:103:103,0:103:3680:0:0:0,-31.0061,-331.399	0/0:130:130,0:130:4622:0:0:0,-39.1339,-416.143	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.666	0/0:89:89,0:89:3154:0:0:0,-26.7917,-284.08	0/1:9:2,7:2:72:7:252:-20.2701,0,-4.12745	0/1:72:30,42:30:1056:42:1500:-113.425,0,-73.6767	0/0:123:123,0:123:4412:0:0:0,-37.0267,-396.878	0/1:192:73,119:73:2593:119:4253:-324.108,0,-175.82	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.791	0/1:63:30,33:30:1072:33:1176:-86.9956,0,-77.8276	0/1:149:67,82:67:2400:82:2918:-216.525,0,-171.403	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:96:42,54:42:1495:54:1936:-145.103,0,-105.945	0/1:85:43,42:43:1548:42:1504:-109.51,0,-114.026	0/1:40:15,25:15:532:25:899:-68.9679,0,-36.1719	0/1:80:36,44:36:1283:44:1576:-117.41,0,-91.6902	0/1:77:23,54:23:815:54:1918:-149.238,0,-50.4915	0/0:126:126,0:126:4504:0:0:0,-37.9298,-405.529	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.03
chr10	1199885	.	CTGCC	TTGCC,TTGCT	224610	PASS	AB=0.526766,0.465901;ABP=28.4676,44.3277;AC=136,52;AF=0.723404,0.276596;AN=188;AO=6301,1927;CIGAR=1X4M,1X3M1X;DP=8286;DPB=8286.2;DPRA=44.5376,0.921912;EPP=61.7924,283.601;EPPR=3.73412;GTI=4;LEN=1,5;MEANALT=2.13978,2.48276;MQM=59.9911,59.9087;MQMR=60;NS=94;NUMALT=2;ODDS=2.71563;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=225178,67552;QR=108;RO=3;RPL=0,0;RPP=13685.5,4187.44;RPPR=9.52472;RPR=6301,1927;RUN=1,1;SAF=3357,1213;SAP=61.7924,283.601;SAR=2944,714;SRF=1;SRP=3.73412;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:37:0,30,7:0:0:30,7:1072,237:-106.901,-19.4802,-10.4493,-87.7616,0,-85.6543	1/1:63:0,63,0:0:0:63,0:2244,0:-202.224,-18.9649,0,-202.224,-18.9649,-202.224	1/2:90:0,69,21:0:0:69,21:2446,736:-259.509,-60.2387,-39.4677,-199.622,0,-193.3	1/2:97:0,53,43:0:0:53,43:1887,1519:-277.067,-123.268,-107.313,-153.793,0,-140.849	1/2:42:0,24,18:0:0:24,18:856,624:-120.851,-51.065,-43.8403,-70.1364,0,-64.7178	1/2:49:0,27,22:0:0:27,22:960,775:-141.324,-63.089,-54.9612,-78.2288,0,-71.6061	1/2:76:0,39,36:0:0:39,36:1400,1254:-216.308,-102.101,-90.3608,-114.336,0,-103.498	1/2:76:0,58,18:0:0:58,18:2088,631:-222.075,-51.6979,-34.2381,-170.73,0,-165.311	1/2:55:0,40,14:0:0:40,14:1424,489:-155.832,-39.7672,-27.726,-116.057,0,-111.842	1/2:56:0,28,28:0:0:28,28:1004,972:-161.251,-79.3612,-70.9323,-82.2424,0,-73.8136	1/2:139:0,60,76:0:0:60,76:2126,2650:-388.712,-215.519,-197.457,-173.196,0,-150.317	1/2:120:0,82,38:0:0:82,38:2924,1333:-347.189,-108.83,-84.1454,-238.711,0,-227.272	1/1:195:0,191,0:0:0:191,0:6812,0:-612.814,-57.4967,0,-612.814,-57.4967,-612.814	1/1:180:0,180,0:0:0:180,0:6430,0:-578.787,-54.1854,0,-578.787,-54.1854,-578.787	1/1:141:0,140,1:0:0:140,1:5008,30:-450.567,-42.1442,0,-448.169,-39.4457,-447.868	1/1:166:0,166,0:0:0:166,0:5931,0:-533.899,-49.971,0,-533.899,-49.971,-533.899	1/2:129:0,70,58:0:0:70,58:2495,2017:-367.356,-163.98,-142.908,-203.367,0,-185.908	1/1:109:0,109,0:0:0:109,0:3893,0:-350.565,-32.8123,0,-350.565,-32.8123,-350.565	1/2:82:1,56,24:1:36:56,24:2004,852:-229.598,-66.4788,-52.5587,-160.479,0,-156.191	1/2:85:0,43,41:0:0:43,41:1528,1448:-242.487,-117.972,-105.028,-124.568,0,-112.226	1/2:110:0,65,45:0:0:65,45:2328,1529:-314.209,-124.343,-104.776,-190.213,0,-176.667	1/2:23:0,6,17:0:0:6,17:216,593:-66.2065,-48.5791,-46.7729,-17.9843,0,-12.8668	1/2:70:0,42,27:0:0:42,27:1504,923:-197.541,-74.8933,-62.2501,-122.637,0,-114.509	1/2:59:0,31,28:0:0:31,28:1116,994:-172.408,-81.3452,-72.0133,-91.4198,0,-82.9909	1/2:66:0,37,29:0:0:37,29:1320,1019:-190.903,-83.2926,-72.1544,-107.964,0,-99.234	1/1:131:0,128,1:0:0:128,1:4588,36:-412.747,-38.5318,0,-409.81,-35.5828,-409.509	1/1:133:0,132,1:0:0:132,1:4720,36:-424.6,-39.736,0,-421.663,-36.4387,-421.362	1/2:82:0,39,42:0:0:39,42:1400,1466:-233.435,-119.23,-107.49,-114.199,0,-101.556	1/2:95:0,41,54:0:0:41,54:1476,1884:-273.085,-152.645,-140.303,-120.794,0,-104.538	1/2:44:0,21,23:0:0:21,23:737,811:-126.363,-66.3858,-60.0642,-60.329,0,-53.4053	1/1:99:0,96,0:0:0:96,0:3443,0:-309.809,-28.8989,0,-309.809,-28.8989,-309.809	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:14:0,5,9:0:0:5,9:176,316:-40.3979,-26.0695,-24.5644,-14.6799,0,-11.9706	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:335:0,331,0:0:0:331,0:11843,0:-1065.45,-99.6409,0,-1065.45,-99.6409,-1065.45	1/2:22:0,8,14:0:0:8,14:284,499:-64.1715,-41.0317,-38.6235,-23.4951,0,-19.2807	1/1:138:0,135,0:0:0:135,0:4835,0:-434.968,-40.6391,0,-434.968,-40.6391,-434.968	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:85:0,41,43:0:0:41,43:1476,1482:-240.805,-120.364,-108.022,-120.434,0,-107.49	1/2:73:0,36,37:0:0:36,37:1288,1314:-212.454,-107.424,-96.5867,-105.387,0,-94.2484	1/2:127:0,66,61:0:0:66,61:2357,2136:-366.31,-174.144,-154.276,-192.519,0,-174.156	1/2:157:0,81,72:0:0:81,72:2897,2542:-443.222,-206.997,-182.613,-236.221,0,-214.547	1/1:113:0,112,0:0:0:112,0:4008,0:-360.696,-33.7154,0,-360.696,-33.7154,-360.696	1/1:77:0,77,0:0:0:77,0:2760,0:-248.642,-23.1793,0,-248.642,-23.1793,-248.642	1/1:59:0,59,0:0:0:59,0:2097,0:-188.998,-17.7608,0,-188.998,-17.7608,-188.998	1/2:88:0,49,37:0:0:49,37:1756,1297:-248.752,-105.532,-90.782,-143.214,0,-132.076	1/1:52:0,52,0:0:0:52,0:1851,0:-166.87,-15.6536,0,-166.87,-15.6536,-166.87	1/1:79:0,78,0:0:0:78,0:2796,0:-251.579,-23.4803,0,-251.579,-23.4803,-251.579	1/1:58:0,58,0:0:0:58,0:2058,0:-185.49,-17.4597,0,-185.49,-17.4597,-185.49	1/2:6:0,4,2:0:0:4,2:144,69:-17.7101,-5.95048,-4.74636,-12.1095,0,-11.5074	1/2:58:0,39,19:0:0:39,19:1400,677:-169.741,-55.5391,-43.7989,-114.559,0,-108.839	1/1:35:0,33,0:0:0:33,0:1172,0:-105.428,-9.93399,0,-105.428,-9.93399,-105.428	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:81:0,81,0:0:0:81,0:2888,0:-260.157,-24.3834,0,-260.157,-24.3834,-260.157	1/2:62:0,22,40:0:0:22,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chr10	1199934	.	C	T	172829	PASS	AB=0.500577;ABP=3.02282;AC=137;AF=0.728723;AN=188;AO=6416;CIGAR=1X;DP=8606;DPB=8606;DPRA=46.2581;EPP=50.3508;EPPR=39.9948;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.9878;MQMR=59.9529;NS=94;NUMALT=1;ODDS=1.91205;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228115;QR=76615;RO=2187;RPL=6376;RPP=13589.9;RPPR=4717.34;RPR=40;RUN=1;SAF=3355;SAP=32.2643;SAR=3061;SRF=1186;SRP=36.9923;SRR=1001;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:25,30:25:884:30:1057:-78.8832,0,-63.3217	1/1:61:0,61:0:0:61:2158:-194.486,-18.3628,0	0/1:129:59,70:59:2045:70:2481:-184.708,0,-145.483	0/1:98:42,56:42:1476:56:2004:-151.133,0,-103.631	0/1:41:19,22:19:676:22:792:-59.2634,0,-48.8258	0/1:61:32,29:32:1133:29:1022:-73.928,0,-83.9138	0/1:74:36,38:36:1250:38:1351:-99.6134,0,-90.5242	0/1:96:39,57:39:1392:57:2029:-153.982,0,-96.6801	0/1:78:39,39:39:1354:39:1363:-99.4845,0,-98.6754	0/1:55:27,28:27:956:28:1008:-74.4751,0,-69.7991	0/1:134:73,61:73:2536:61:2148:-153.247,0,-188.151	0/1:161:75,86:75:2620:86:3096:-230.4,0,-187.583	1/1:197:0,197:0:0:197:6982:-628.447,-59.3029,0	1/1:182:0,182:0:0:182:6421:-577.982,-54.7875,0	1/1:141:0,141:0:0:141:5012:-451.226,-42.4452,0	1/1:164:1,163:1:36:163:5822:-520.495,-45.7706,0	0/1:137:68,69:68:2353:69:2457:-180.141,0,-170.786	1/1:108:0,108:0:0:108:3836:-345.437,-32.5112,0	0/1:111:52,59:52:1793:59:2096:-155.494,0,-128.231	0/1:86:43,43:43:1501:43:1502:-109.583,0,-109.479	0/1:113:45,68:45:1612:68:2423:-184.309,0,-111.354	0/1:23:17,6:17:574:6:216:-12.8668,0,-45.0523	0/1:70:25,45:25:879:45:1589:-122.22,0,-58.3547	0/1:59:28,31:28:992:31:1116:-82.9909,0,-71.8336	0/1:68:28,40:28:995:40:1423:-107.897,0,-69.394	1/1:133:1,132:1:36:132:4678:-417.583,-36.4387,0	1/1:133:1,132:1:36:132:4711:-420.552,-36.4387,0	0/1:84:44,40:44:1508:40:1432:-103.891,0,-110.72	0/1:91:50,41:50:1750:41:1459:-104.212,0,-129.448	0/1:45:23,22:23:811:22:779:-56.8857,0,-59.759	1/1:99:0,99:0:0:99:3511:-316.2,-29.802,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:14:9,5:9:311:5:180:-12.3376,0,-24.1093	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:342:0,341:0:0:341:12092:-1087.92,-102.651,0	0/1:22:14,8:14:474:8:269:-17.9135,0,-36.3596	1/1:135:0,135:0:0:135:4822:-434.135,-40.6391,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:82:41,41:41:1441:41:1459:-106.921,0,-105.299	0/1:74:38,35:38:1329:35:1260:-91.3705,0,-97.5729	0/1:124:60,64:60:2132:64:2291:-169.123,0,-154.821	0/1:156:75,81:75:2578:81:2854:-210.136,0,-185.306	1/1:122:0,122:0:0:122:4346:-391.316,-36.7257,0	1/1:76:0,76:0:0:76:2716:-244.684,-22.8783,0	1/1:60:0,60:0:0:60:2123:-191.338,-18.0618,0	0/1:88:37,51:37:1293:51:1827:-138.22,0,-90.1783	1/1:52:0,52:0:0:52:1842:-166.059,-15.6536,0	1/1:76:0,76:0:0:76:2719:-244.953,-22.8783,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:73:33,40:33:1159:40:1436:-107.562,0,-82.6407	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:80:0,80:0:0:80:2833:-255.206,-24.0824,0	0/1:62:40,22:40:1404:22:775:-51.4073,0,-107.987	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	0/0:12:11,1:11:388:1:36:0,-0.0140849,-31.6591	1/1:62:0,62:0:0:62:2189:-197.274,-18.6639,0	0/1:190:95,94:95:3328:94:3298:-239.929,0,-242.629	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:74:45,29:45:1591:29:1027:-70.466,0,-121.203	1/1:75:0,75:0:0:75:2669:-240.454,-22.5773,0	1/1:49:0,49:0:0:49:1737:-156.613,-14.7505,0	1/1:56:1,55:1:36:55:1963:-173.346,-13.2594,0	0/1:108:52,56:52:1826:56:1999:-147.672,0,-132.108	1/1:80:0,80:0:0:80:2857:-257.349,-24.0824,0	1/1:73:1,72:1:36:72:2561:-227.141,-18.3769,0	1/1:26:0,26:0:0:26:912:-82.3931,-7.82678,0	1/1:157:0,157:0:0:157:5604:-504.481,-47.2617,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:31:17,14:17:600:14:492:-35.2804,0,-44.9973	1/1:65:1,64:1:36:64:2280:-201.862,-15.9687,0	1/1:172:0,172:0:0:172:6096:-548.744,-51.7772,0	1/1:114:0,114:0:0:114:4062:-365.768,-34.3174,0	1/1:93:1,92:1:21:92:3273:-292.69,-25.8958,0	1/1:99:0,99:0:0:99:3548:-319.528,-29.802,0	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/1:75:42,33:42:1482:33:1188:-84.6467,0,-111.096	1/1:94:0,94:0:0:94:3331:-300.007,-28.2968,0	0/1:194:95,99:95:3387:99:3544:-260.769,0,-246.646	1/1:154:0,154:0:0:154:5449:-490.529,-46.3586,0	1/1:161:0,161:0:0:161:5747:-517.348,-48.4658,0	0/1:168:83,85:83:2889:85:3031:-222.447,0,-209.677	0/1:252:126,126:126:4434:126:4503:-329.579,0,-323.376	1/1:58:1,57:1:36:57:2017:-178.203,-13.8615,0	0/1:140:62,78:62:2146:78:2761:-206.587,0,-151.253	0/1:125:73,52:73:2545:52:1855:-129.6,0,-191.665	0/1:121:62,59:62:2190:59:2097:-152.573,0,-160.94	0/1:142:79,63:79:2755:63:2252:-160.197,0,-205.444	0/1:123:81,42:81:2862:42:1504:-98.6246,0,-220.792	1/1:102:0,102:0:0:102:3561:-320.7,-30.7051,0	1/1:251:2,249:2:72:249:8858:-790.372,-68.7218,0
chr10	1255939	.	T	C	26715.6	PASS	AB=0.576087;ABP=137.17;AC=49;AF=0.263441;AN=186;AO=1539;CIGAR=1X;DP=4691;DPB=4691;DPRA=1.19908;EPP=3336.23;EPPR=6810.62;GTI=2;LEN=1;MEANALT=1;MQM=60;MQMR=59.9987;NS=93;NUMALT=1;ODDS=0.274278;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54863;QR=112733;RO=3151;RPL=1539;RPP=3344.91;RPPR=6836.64;RPR=0;RUN=1;SAF=1;SAP=3336.23;SAR=1538;SRF=3;SRP=6819.29;SRR=3148;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:17,13:17:608:13:468:-33.4287,0,-46.0211	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:71:32,39:32:1148:39:1389:-103.934,0,-82.2567	0/1:79:39,40:39:1370:40:1440:-106.116,0,-99.8131	0/1:45:11,34:11:396:34:1224:-96.9207,0,-22.4364	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:69:23,46:23:828:46:1640:-127.118,0,-54.073	0/1:76:22,54:22:792:54:1917:-149.927,0,-48.7274	0/1:48:25,23:25:900:23:824:-60.0339,0,-66.8716	0/1:52:17,35:17:608:35:1241:-96.3389,0,-39.3985	0/1:35:16,19:16:576:19:675:-50.5409,0,-41.6389	0/1:58:30,28:30:1072:28:995:-72.4043,0,-79.3327	0/0:37:36,1:36:1296:1:36:0,-7.53983,-113.346	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:28:8,20:8:288:20:692:-54.1698,0,-17.8386	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:28:11,17:11:396:17:604:-46.2618,0,-27.5539	0/1:75:25,50:25:896:50:1785:-138.353,0,-58.3831	0/1:94:52,42:52:1856:42:1508:-107.718,0,-139.023	0/1:67:23,44:23:824:44:1576:-121.963,0,-54.3143	0/1:57:22,35:22:792:35:1256:-96.1866,0,-54.447	0/1:60:29,31:29:1032:31:1097:-80.9762,0,-75.1317	0/1:75:29,46:29:1021:46:1643:-125.581,0,-69.623	0/0:106:106,0:106:3774:0:0:0,-31.9092,-339.857	0/0:84:84,0:84:3024:0:0:0,-25.2865,-272.389	0/1:26:12,14:12:402:14:500:-37.5094,0,-28.6725	0/1:135:53,82:53:1908:82:2933:-223.565,0,-131.358	0/1:53:13,40:13:468:40:1425:-112.591,0,-26.5051	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	0/1:95:48,47:48:1713:47:1688:-123.609,0,-125.856	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:64:29,35:29:1044:35:1252:-93.7192,0,-75.0089	0/1:25:14,11:14:500:11:392:-28.0943,0,-37.8104	0/1:52:24,28:24:864:28:970:-71.9541,0,-62.429	0/1:37:14,23:14:504:23:813:-62.351,0,-34.56	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:76:75,1:75:2700:1:36:0,-19.28,-239.645	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/1:100:33,67:33:1180:67:2386:-184.894,0,-76.405	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.738	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	.:.:.:.:.:.:.:.	0/1:81:36,45:36:1296:45:1608:-120.627,0,-92.5605	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	0/0:56:55,0:55:1946:0:0:0,-16.5566,-175.052	0/1:45:13,32:13:464:32:1143:-89.6323,0,-28.5512	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:16:3,13:3:108:13:464:-37.281,0,-5.25869	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:94:61,33:61:2173:33:1184:-78.5715,0,-167.538	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:71:24,47:24:856:47:1673:-129.483,0,-55.988	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:80:29,51:29:1036:51:1791:-137.385,0,-69.4715	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.128	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:60:21,39:21:737:39:1392:-107.517,0,-48.5888	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:126:126,0:126:4532:0:0:0,-37.9298,-408.045	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:45:15,30:15:540:30:1061:-82.253,0,-35.3902	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:124:62,62:62:2179:62:2212:-162.017,0,-159.044	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	0/1:64:38,26:38:1364:26:928:-64.5723,0,-103.795	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:46:17,29:17:612:29:1036:-79.7065,0,-41.5661	0/1:41:15,26:15:532:26:936:-72.2172,0,-35.8709	0/1:27:19,8:19:680:8:288:-18.1396,0,-53.4014	0/1:106:59,47:59:2116:47:1662:-117.958,0,-158.8	0/1:47:12,35:12:432:35:1248:-98.4765,0,-25.0728	0/0:53:53,0:53:1876:0:0:0,-15.9546,-169.116	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.161
chr10	1267905	.	A	G	12955.5	PASS	AB=0.441239;ABP=59.1531;AC=52;AF=0.276596;AN=188;AO=830;CIGAR=1X;DP=3766;DPB=3766;DPRA=0.845443;EPP=1779.37;EPPR=6240.24;GTI=3;LEN=1;MEANALT=1;MQM=59.947;MQMR=59.5235;NS=94;NUMALT=1;ODDS=0.28147;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29619;QR=104508;RO=2936;RPL=3;RPP=1779.37;RPPR=6240.24;RPR=827;RUN=1;SAF=830;SAP=1805.33;SAR=0;SRF=2936;SRP=6378.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:22,12:22:754:12:432:-28.9862,0,-57.9383	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:54:30,24:30:1080:24:864:-61.7985,0,-81.2391	0/1:92:36,56:36:1273:56:1993:-151.947,0,-87.1588	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/1:35:17,18:17:612:18:638:-47.2127,0,-44.874	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/1:93:46,47:46:1644:47:1678:-123.31,0,-119.896	0/1:63:34,29:34:1209:29:1036:-74.589,0,-90.114	0/1:47:18,29:18:644:29:1036:-79.4055,0,-44.1422	0/1:20:12,8:12:428:8:277:-19.2445,0,-32.8205	0/1:32:23,9:23:828:9:324:-19.8729,0,-65.2112	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.333	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6473	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:29:29,0:29:1036:0:0:0,-8.72987,-92.429	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6972	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0239	0/1:34:19,15:19:654:15:540:-38.7015,0,-48.9379	0/1:61:29,32:29:1014:32:1137:-84.2741,0,-73.1883	0/1:37:19,18:19:680:18:638:-46.6092,0,-50.0193	0/1:49:27,22:27:938:22:788:-56.4943,0,-69.4874	0/1:26:18,8:18:644:8:284:-18.0766,0,-50.4638	0/1:31:21,10:21:756:10:360:-23.4124,0,-59.0353	0/0:130:130,0:130:4629:0:0:0,-39.1339,-416.743	0/0:115:115,0:115:4105:0:0:0,-34.6184,-369.61	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:51:30,21:30:1072:21:748:-52.2928,0,-81.4343	0/1:50:35,15:35:1222:15:521:-32.1648,0,-95.0378	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.453	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3072	0/1:29:24,5:24:864:5:180:-7.82219,0,-69.3445	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.521	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.611	0/1:88:52,36:52:1853:36:1288:-89.7329,0,-140.533	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9012	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:40:17,23:17:612:23:828:-62.7853,0,-43.3722	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/1:63:35,28:35:1256:28:993:-70.7176,0,-94.3355	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0693	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9342	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.255	0/0:85:85,0:85:3037:0:0:0,-25.5875,-272.876	0/1:66:44,22:44:1516:22:788:-51.3764,0,-116.856	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.925	0/0:69:69,0:69:2416:0:0:0,-20.7711,-217.491	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4043	0/1:17:12,5:12:428:5:180:-11.4346,0,-33.7367	0/1:39:20,19:20:720:19:684:-50.1502,0,-53.3886	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6794	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7719	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.11	0/1:35:21,14:21:756:14:500:-34.8001,0,-57.8127	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.5577	0/1:10:2,8:2:72:8:288:-23.2463,0,-3.82642	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.619	0/1:43:25,18:25:881:18:648:-45.7076,0,-66.6373	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:63:21,42:21:748:42:1502:-116.509,0,-48.5912	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.868	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1206	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.997	0/1:95:52,43:52:1845:43:1510:-107.591,0,-137.029	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.611	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6124	0/0:32:32,0:32:1102:0:0:0,-9.63296,-99.4822	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.8996	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2843	0/1:55:38,17:38:1364:17:608:-38.4954,0,-106.461	0/0:58:58,0:58:2001:0:0:0,-17.4597,-180.335	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.262	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.587	0/0:98:98,0:98:3455:0:0:0,-29.5009,-311.099	0/0:53:50,3:50:1758:3:108:0,-5.87942,-148.321	0/1:22:9,13:9:320:13:464:-35.4748,0,-22.5019	0/1:41:23,18:23:828:18:644:-45.9484,0,-62.4937	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.712	0/1:58:32,26:32:1118:26:936:-67.0997,0,-81.8957	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8793	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7072	0/1:31:21,10:21:756:10:360:-23.4124,0,-59.0271	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:18:9,9:9:320:9:320:-23.7238,0,-23.7238	0/1:15:7,8:7:252:8:280:-21.0239,0,-18.4769	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:40:27,13:27:972:13:464:-30.0563,0,-75.7567	0/1:26:14,12:14:504:12:420:-30.3072,0,-37.8713	0/0:52:52,0:52:1823:0:0:0,-15.6536,-164.34	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759
chr10	1267948	.	C	T	58749.5	PASS	AB=0.562227;ABP=64.627;AC=136;AF=0.723404;AN=188;AO=2839;CIGAR=1X;DP=3645;DPB=3645;DPRA=39.1828;EPP=6167.82;EPPR=1751.05;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.5403;MQMR=59.9491;NS=94;NUMALT=1;ODDS=0.563127;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100642;QR=28248;RO=805;RPL=2839;RPP=6167.82;RPPR=1751.05;RPR=0;RUN=1;SAF=2839;SAP=6167.82;SAR=0;SRF=805;SRP=1751.05;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:12,22:12:424:22:779:-60.197,0,-28.2614	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0	0/1:52:23,29:23:772:29:1021:-76.5282,0,-54.1338	0/1:94:55,38:55:1940:38:1351:-93.5195,0,-146.518	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/1:34:19,15:19:659:15:536:-38.3364,0,-49.3973	0/1:24:11,13:11:384:13:464:-34.8728,0,-27.67	0/1:89:47,42:47:1650:42:1477:-106.074,0,-121.995	0/1:60:29,31:29:995:31:1104:-81.5736,0,-71.7941	0/1:47:29,18:29:1022:18:648:-44.5035,0,-78.1425	0/1:19:7,12:7:243:12:424:-32.7591,0,-16.4879	0/1:32:9,23:9:307:23:824:-64.8504,0,-18.3273	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	1/1:18:0,18:0:0:18:640:-57.9247,-5.41854,0	1/1:27:0,27:0:0:27:959:-86.435,-8.12781,0	1/1:27:0,27:0:0:27:950:-84.3594,-8.12781,0	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	1/1:13:0,13:0:0:13:464:-42.0966,-3.91339,0	0/1:17:8,9:8:271:9:307:-22.8424,0,-19.6019	0/1:33:15,18:15:527:18:630:-47.086,0,-37.8262	0/1:59:31,28:31:1112:28:988:-71.4631,0,-82.6306	0/1:37:18,19:18:627:19:678:-50.079,0,-45.6117	0/1:49:22,27:22:784:27:968:-72.1955,0,-56.1334	0/1:27:8,19:8:288:19:675:-52.9491,0,-18.1396	0/1:32:10,22:10:347:22:792:-61.9727,0,-21.9307	1/1:123:0,123:0:0:123:4364:-392.916,-37.0267,0	1/1:115:0,115:0:0:115:4029:-362.768,-34.6185,0	0/1:6:2,4:2:72:4:135:-10.6763,0,-5.03054	0/1:50:20,30:20:705:30:1067:-81.2827,0,-48.7213	0/1:47:14,33:14:491:33:1173:-91.6408,0,-30.3724	1/1:92:0,92:0:0:92:3268:-294.327,-27.6948,0	1/1:28:0,28:0:0:28:1000:-90.3072,-8.42884,0	0/1:29:5,24:5:180:24:856:-68.6231,0,-7.82219	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	1/1:10:0,10:0:0:10:341:-31.0178,-3.0103,0	1/1:18:0,18:0:0:18:623:-56.3931,-5.41854,0	1/1:64:0,64:0:0:64:2270:-204.549,-19.2659,0	0/1:85:33,52:33:1159:52:1852:-141.347,0,-79.0283	1/1:14:0,14:0:0:14:500:-45.3008,-4.21442,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:39:22,17:22:775:17:604:-42.9504,0,-58.331	0/1:20:9,11:9:311:11:392:-29.5995,0,-22.3031	0/1:61:26,35:26:932:35:1248:-94.2171,0,-65.836	0/1:21:8,13:8:288:13:459:-35.3163,0,-19.9458	1/1:14:0,14:0:0:14:495:-44.8827,-4.21442,0	1/1:56:0,56:0:0:56:1946:-175.373,-16.8577,0	1/1:78:0,78:0:0:78:2766:-248.75,-23.4803,0	0/1:65:21,44:21:748:44:1571:-122.105,0,-48.0783	1/1:39:0,39:0:0:39:1371:-123.672,-11.7402,0	1/1:66:0,66:0:0:66:2348:-211.57,-19.868,0	1/1:20:0,20:0:0:20:708:-64.0432,-6.0206,0	0/1:17:5,12:5:180:12:428:-33.7367,0,-11.4346	0/1:39:19,20:19:672:20:716:-53.0275,0,-49.0667	1/1:16:0,16:0:0:16:576:-52.1657,-4.81648,0	0/1:9:4,5:4:144:5:176:-13.4674,0,-10.6043	1/1:40:0,40:0:0:40:1424:-128.433,-12.0412,0	0/1:35:14,21:14:487:21:747:-56.9998,0,-33.6231	0/1:13:5,8:5:180:8:264:-20.0357,0,-12.6387	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8887	1/1:44:0,44:0:0:44:1555:-140.241,-13.2453,0	0/1:42:17,25:17:595:25:879:-66.7565,0,-41.2334	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:58:38,20:38:1336:20:695:-45.3234,0,-103.077	1/1:86:0,86:0:0:86:2998:-270.029,-25.8886,0	1/1:20:0,20:0:0:20:712:-64.4034,-6.0206,0	1/1:21:0,21:0:0:21:744:-67.2779,-6.32163,0	0/1:95:40,55:40:1398:55:1964:-147.602,0,-97.5076	1/1:87:0,87:0:0:87:3090:-278.32,-26.1896,0	0/1:9:1,8:1:36:8:288:-23.5499,0,-0.889005	1/1:31:0,31:0:0:31:1096:-98.9499,-9.33193,0	1/1:29:0,29:0:0:29:1030:-92.9922,-8.72987,0	1/1:17:0,17:0:0:17:603:-54.5887,-5.11751,0	0/1:53:17,36:17:596:36:1288:-100.236,0,-38.0132	1/1:57:0,57:0:0:57:2039:-183.718,-17.1587,0	1/1:60:0,60:0:0:60:2132:-192.113,-18.0618,0	1/1:57:0,57:0:0:57:2016:-181.704,-17.1587,0	1/1:95:0,95:0:0:95:3372:-303.648,-28.5979,0	1/1:48:3,45:3:108:45:1588:-133.029,-4.37427,0	0/1:22:13,9:13:456:9:324:-22.8654,0,-34.7506	0/1:40:17,23:17:588:23:815:-61.6285,0,-41.201	1/1:44:0,44:0:0:44:1544:-139.231,-13.2453,0	0/1:58:26,32:26:917:32:1135:-83.6057,0,-65.3849	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	1/1:22:0,22:0:0:22:775:-70.0693,-6.62266,0	0/1:9:3,6:3:104:6:216:-17.0729,0,-6.99354	0/1:31:11,20:11:388:20:720:-55.7887,0,-25.9254	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:18:9,9:9:294:9:324:-24.0873,0,-21.3596	0/1:12:6,6:6:216:6:216:-16.1415,0,-16.1782	0/1:13:5,8:5:165:8:279:-21.5341,0,-11.2602	0/1:39:13,26:13:460:26:923:-71.6472,0,-29.9952	0/1:24:11,13:11:383:13:460:-34.5107,0,-27.5785	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0
chr10	1276837	.	A	G	111106	PASS	AB=0.477691;ABP=23.4535;AC=138;AF=0.734043;AN=188;AO=5558;CIGAR=1X;DP=8036;DPB=8036;DPRA=0;EPP=11804.3;EPPR=5282.28;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9629;MQMR=59.9172;NS=94;NUMALT=1;ODDS=0.944716;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194116;QR=88030;RO=2475;RPL=31;RPP=11804.3;RPPR=5282.28;RPR=5527;RUN=1;SAF=0;SAP=12072.1;SAR=5558;SRF=0;SRP=5377.4;SRR=2475;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:21,29:21:732:29:1014:-76.159,0,-50.7876	1/1:105:2,103:2:72:103:3619:-319.082,-24.7714,0	0/1:188:101,87:101:3604:87:3028:-216.16,0,-267.776	0/1:193:93,100:93:3297:100:3494:-256.575,0,-238.849	0/1:68:37,31:37:1315:31:1095:-78.3891,0,-98.181	0/1:66:42,24:42:1495:24:852:-57.1242,0,-114.976	0/1:82:40,42:40:1436:42:1435:-104.756,0,-104.853	0/1:110:54,56:54:1914:56:1958:-143.379,0,-139.423	0/1:92:66,26:66:2355:26:916:-55.0617,0,-183.117	0/1:76:44,32:44:1561:32:1127:-78.8592,0,-117.899	0/1:44:24,20:24:860:20:673:-47.6387,0,-64.4765	0/1:73:34,39:34:1211:39:1360:-100.723,0,-87.3203	1/1:55:0,55:0:0:55:1952:-175.956,-16.5567,0	1/1:48:0,48:0:0:48:1638:-147.7,-14.4494,0	1/1:52:0,52:0:0:52:1800:-162.276,-15.6536,0	1/1:34:0,34:0:0:34:1191:-107.494,-10.235,0	0/1:58:25,33:25:892:33:1172:-88.3278,0,-63.1399	1/1:34:0,34:0:0:34:1196:-107.945,-10.235,0	0/1:31:18,13:18:631:13:446:-31.1345,0,-47.7838	0/1:177:80,97:80:2864:97:3435:-256.082,0,-204.627	0/1:129:65,64:65:2319:64:2228:-161.951,0,-170.109	0/1:206:138,68:138:4915:68:2372:-151.723,0,-380.491	0/1:91:38,53:38:1364:53:1856:-139.881,0,-95.667	0/1:68:33,35:33:1153:35:1197:-87.5557,0,-83.6041	0/1:63:26,37:26:936:37:1295:-97.8854,0,-65.5946	1/1:213:0,213:0:0:213:7337:-660.398,-64.1194,0	1/1:139:1,138:1:36:138:4823:-430.62,-38.2449,0	0/1:40:22,18:22:772:18:627:-44.7132,0,-57.7601	0/1:173:96,77:96:3440:77:2725:-193.415,0,-257.735	0/1:210:100,110:100:3564:110:3882:-286.362,0,-257.753	1/1:81:0,81:0:0:81:2826:-254.58,-24.3834,0	1/1:25:0,25:0:0:25:884:-79.8784,-7.52575,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:9:0,9:0:0:9:311:-28.3237,-2.70927,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:8:0,8:0:0:8:269:-24.5361,-2.40824,0	1/1:149:0,149:0:0:149:5210:-469.047,-44.8535,0	0/1:152:91,61:91:3219:61:2176:-150.35,0,-244.172	1/1:38:1,37:1:36:37:1286:-112.441,-7.84087,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:158:86,72:86:3050:72:2505:-178.137,0,-227.165	0/1:43:12,31:12:432:31:1069:-83.5713,0,-26.2769	0/1:161:92,69:92:3276:69:2422:-169.771,0,-246.596	0/1:47:26,21:26:923:21:735:-52.323,0,-69.2337	1/1:50:0,50:0:0:50:1746:-157.423,-15.0515,0	1/1:80:0,80:0:0:80:2819:-253.948,-24.0824,0	1/1:133:1,131:1:36:131:4584:-409.13,-36.4975,0	0/1:153:69,84:69:2449:84:2916:-216.587,0,-174.606	1/1:90:0,90:0:0:90:3114:-280.489,-27.0927,0	1/1:99:0,99:0:0:99:3441:-309.906,-29.802,0	1/1:146:0,146:0:0:146:5052:-454.836,-43.9504,0	0/1:13:5,8:5:180:8:279:-21.5341,0,-12.6387	0/1:170:91,79:91:3204:79:2793:-200.435,0,-237.41	1/1:52:0,52:0:0:52:1789:-161.288,-15.6536,0	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	1/1:128:0,128:0:0:128:4446:-400.309,-38.5318,0	0/1:66:29,37:29:1025:37:1298:-97.2517,0,-72.6904	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:17:9,8:9:324:8:275:-19.9651,0,-24.3883	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	0/1:104:58,46:58:2059:46:1597:-112.71,0,-154.274	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:183:85,97:85:3040:97:3398:-250.89,0,-218.683	1/1:170:1,169:1:36:169:5944:-531.475,-47.5768,0	1/1:43:0,43:0:0:43:1511:-136.282,-12.9443,0	1/1:80:0,80:0:0:80:2809:-253.051,-24.0824,0	0/1:220:132,88:132:4676:88:3085:-211.652,0,-354.777	1/1:99:0,99:0:0:99:3429:-308.779,-29.802,0	1/1:15:0,15:0:0:15:524:-47.4887,-4.51545,0	1/1:54:0,54:0:0:54:1858:-167.496,-16.2556,0	1/1:61:0,61:0:0:61:2153:-194.036,-18.3628,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:105:50,55:50:1800:55:1910:-140.566,0,-130.674	1/1:60:0,60:0:0:60:2115:-190.583,-18.0618,0	1/1:122:0,122:0:0:122:4232:-381.063,-36.7257,0	1/1:143:0,143:0:0:143:5048:-454.472,-43.0473,0	1/1:103:1,102:1:36:102:3580:-318.813,-27.4078,0	1/1:79:0,79:0:0:79:2762:-248.822,-23.7814,0	0/1:16:7,9:7:252:9:309:-23.3242,0,-18.2125	0/1:153:91,62:91:3242:62:2176:-150.047,0,-245.931	1/1:111:0,111:0:0:111:3864:-347.958,-33.4143,0	0/1:189:91,98:91:3233:98:3409:-250.132,0,-234.297	1/1:96:0,96:0:0:96:3326:-299.557,-28.8989,0	1/1:47:0,47:0:0:47:1649:-148.696,-14.1484,0	0/1:75:38,37:38:1356:37:1263:-91.3891,0,-99.7632	0/1:105:49,56:49:1725:56:1973:-146.236,0,-123.917	1/1:29:0,29:0:0:29:997:-90.0374,-8.72987,0	0/1:67:36,31:36:1257:31:1091:-78.3297,0,-93.261	0/1:48:28,20:28:999:20:708:-49.5962,0,-75.7751	0/1:28:14,14:14:500:14:496:-36.5454,0,-36.9073	0/1:73:33,40:33:1180:40:1398:-104.14,0,-84.5329	0/1:55:32,23:32:1135:23:781:-54.0433,0,-85.9014	1/1:72:0,72:0:0:72:2494:-224.71,-21.6742,0	1/1:85:0,85:0:0:85:2948:-265.555,-25.5876,0
chr10	1276865	.	G	A	42028.2	PASS	AB=0.518409;ABP=17.0017;AC=50;AF=0.265957;AN=188;AO=2470;CIGAR=1X;DP=8142;DPB=8142;DPRA=1.40417;EPP=5357.86;EPPR=12284.9;GTI=1;LEN=1;MEANALT=1.03636;MQM=59.9113;MQMR=59.9628;NS=94;NUMALT=1;ODDS=2.19815;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88259;QR=202537;RO=5668;RPL=1;RPP=5357.86;RPPR=12284.9;RPR=2469;RUN=1;SAF=0;SAP=5366.55;SAR=2470;SRF=0;SRP=12310.9;SRR=5668;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:30,21:30:1068:21:752:-52.6455,0,-81.0795	0/0:110:108,2:108:3876:2:72:0,-26.2766,-342.197	0/1:189:90,99:90:3223:99:3535:-261.393,0,-233.397	0/1:191:101,90:101:3620:90:3228:-233.244,0,-268.508	0/1:65:29,36:29:1032:36:1283:-96.1972,0,-73.6265	0/1:61:21,40:21:756:40:1414:-109.192,0,-50.0044	0/1:83:43,40:43:1536:40:1432:-104.192,0,-113.548	0/1:117:61,56:61:2180:56:2012:-146.133,0,-161.246	0/1:96:29,67:29:1027:67:2404:-187.353,0,-63.7983	0/1:75:31,44:31:1116:44:1580:-119.914,0,-78.1744	0/1:43:19,24:19:680:24:864:-65.1383,0,-48.5849	0/1:74:40,34:40:1423:34:1224:-88.1908,0,-106.09	0/0:59:59,0:59:2111:0:0:0,-17.7608,-190.258	0/0:49:49,0:49:1702:0:0:0,-14.7505,-153.458	0/0:55:55,0:55:1950:0:0:0,-16.5566,-175.775	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:58:33,25:33:1179:25:900:-63.8613,0,-88.9575	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:32:14,18:14:485:18:644:-48.6576,0,-34.344	0/1:178:99,78:99:3537:78:2796:-198.374,0,-265.034	0/1:131:67,64:67:2387:64:2285:-166.447,0,-175.652	0/1:201:63,138:63:2260:138:4944:-384.602,0,-143.156	0/1:94:54,40:54:1936:40:1440:-101.599,0,-146.175	0/1:69:35,34:35:1240:34:1211:-88.5244,0,-91.1148	0/1:65:38,27:38:1348:27:972:-68.231,0,-102.053	0/0:217:215,0:215:7662:0:0:0,-64.7214,-689.326	0/0:139:138,1:138:4946:1:36:0,-38.2449,-441.676	0/1:39:17,22:17:612:22:792:-59.8655,0,-43.6733	0/1:170:77,93:77:2755:93:3335:-249.191,0,-197.016	0/1:213:115,98:115:4106:98:3527:-253.519,0,-305.577	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:150:150,0:150:5318:0:0:0,-45.1545,-478.754	0/1:149:61,88:61:2192:88:3145:-238.419,0,-152.692	0/0:39:39,0:39:1389:0:0:0,-11.7402,-125.307	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:161:71,90:71:2556:90:3231:-242.415,0,-181.824	0/1:44:32,12:32:1139:12:423:-25.1597,0,-89.5731	0/1:160:72,88:72:2576:88:3156:-236.1,0,-183.925	0/1:47:21,26:21:752:26:927:-69.5943,0,-53.8578	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/0:80:80,0:80:2857:0:0:0,-24.0824,-257.365	0/0:139:138,1:138:4921:1:36:0,-38.2449,-439.443	0/1:151:80,70:80:2860:70:2516:-181.177,0,-211.934	0/0:89:89,0:89:3187:0:0:0,-26.7917,-287.053	0/0:103:103,0:103:3691:0:0:0,-31.0061,-332.391	0/0:151:151,0:151:5400:0:0:0,-45.4555,-486.131	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:170:78,92:78:2796:92:3285:-244.664,0,-200.705	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:17:14,3:14:504:3:108:-4.95766,0,-40.5806	0/0:138:138,0:138:4939:0:0:0,-41.5421,-444.627	0/1:67:40,27:40:1436:27:968:-67.2684,0,-109.369	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.149	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:106:50,56:50:1796:56:1966:-145.302,0,-130.013	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:184:99,85:99:3539:85:3052:-219.519,0,-263.329	0/0:163:162,1:162:5776:1:36:0,-45.4696,-516.357	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/0:82:82,0:82:2924:0:0:0,-24.6845,-263.396	0/1:225:89,136:89:3157:136:4795:-363.974,0,-216.623	0/0:101:101,0:101:3619:0:0:0,-30.404,-325.401	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:107:55,52:55:1959:52:1859:-135.379,0,-144.375	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:127:127,0:127:4546:0:0:0,-38.2308,-409.26	0/0:145:145,0:145:5212:0:0:0,-43.6493,-469.216	0/0:106:105,1:105:3764:1:36:0,-28.3109,-335.361	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:153:60,93:60:2144:93:3319:-252.865,0,-147.17	0/0:116:116,0:116:4143:0:0:0,-34.9195,-373.054	0/1:193:98,95:98:3503:95:3385:-246.737,0,-257.381	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.493	0/0:54:54,0:54:1911:0:0:0,-16.2556,-172.264	0/1:73:37,36:37:1324:36:1296:-94.9687,0,-97.4869	0/1:105:57,48:57:2035:48:1716:-123.116,0,-151.813	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:71:33,38:33:1169:38:1315:-97.2708,0,-84.1422	0/1:49:20,29:20:712:29:1044:-79.5243,0,-49.6562	0/1:28:14,14:14:504:14:487:-35.7304,0,-37.2693	0/1:75:41,34:41:1472:34:1200:-85.7265,0,-110.199	0/1:53:23,30:23:820:30:1052:-79.0331,0,-58.1679	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.797
chr10	1276868	.	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chr10	1318115	.	A	G	142157	PASS	AB=0.517004;ABP=15.0474;AC=138;AF=0.741935;AN=186;AO=6811;CIGAR=1X;DP=9140;DPB=9140;DPRA=0;EPP=14740.8;EPPR=5006.18;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9718;MQMR=59.9828;NS=93;NUMALT=1;ODDS=1.05056;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242882;QR=83165;RO=2324;RPL=6805;RPP=14740.8;RPPR=5006.18;RPR=6;RUN=1;SAF=6811;SAP=14792.9;SAR=0;SRF=2324;SRP=5049.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:34,12:34:1224:12:432:-25.3738,0,-96.6197	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	0/1:67:34,33:34:1212:33:1188:-87.0596,0,-89.2173	0/1:203:108,95:108:3876:95:3379:-243.216,0,-287.925	0/1:34:20,14:20:697:14:500:-35.1012,0,-52.8156	0/1:65:34,31:34:1224:31:1112:-80.8244,0,-90.9001	0/1:137:57,80:57:2017:80:2847:-215.225,0,-140.56	0/1:152:65,87:65:2315:87:3089:-232.481,0,-162.854	0/1:123:50,73:50:1773:73:2621:-199.111,0,-122.824	0/1:91:46,45:46:1648:45:1600:-116.896,0,-121.215	0/1:120:43,77:43:1544:77:2740:-210.717,0,-103.129	0/1:150:86,64:86:3080:64:2273:-159.676,0,-232.274	1/1:120:0,120:0:0:120:4255:-383.113,-36.1236,0	1/1:127:0,127:0:0:127:4531:-407.957,-38.2308,0	1/1:82:0,82:0:0:82:2916:-262.674,-24.6845,0	1/1:85:0,84:0:0:84:3004:-270.38,-25.2865,0	0/1:72:32,40:32:1152:40:1432:-107.503,0,-82.316	1/1:48:0,48:0:0:48:1700:-153.283,-14.4494,0	0/1:55:18,37:18:644:37:1310:-101.643,0,-41.7339	0/1:210:95,115:95:3373:115:4108:-306.687,0,-239.381	0/1:168:75,93:75:2692:93:3336:-249.876,0,-191.951	0/1:61:43,18:43:1544:18:648:-40.2891,0,-120.89	0/1:173:83,89:83:2976:89:3168:-233.207,0,-215.935	0/1:91:45,46:45:1620:46:1644:-120.855,0,-118.696	0/1:109:37,72:37:1324:72:2584:-199.997,0,-86.6498	1/1:184:0,184:0:0:184:6575:-591.809,-55.3895,0	1/1:247:0,247:0:0:247:8822:-793.964,-74.3544,0	0/1:44:23,21:23:824:21:756:-55.1219,0,-61.2371	0/1:192:105,87:105:3756:87:3090:-220.528,0,-280.442	0/1:102:49,53:49:1737:53:1876:-138.411,0,-125.907	1/1:130:0,130:0:0:130:4623:-416.236,-39.1339,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:219:1,218:1:36:218:7778:-696.451,-62.3273,0	0/1:97:30,67:30:1068:67:2395:-186.607,0,-67.2322	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	0/1:117:63,54:63:2256:54:1936:-139.296,0,-168.082	0/1:45:23,22:23:828:22:783:-57.2466,0,-61.2978	0/1:57:31,26:31:1108:26:904:-64.5132,0,-82.8723	0/1:115:43,72:43:1548:72:2569:-196.84,0,-104.995	1/1:74:0,74:0:0:74:2648:-238.553,-22.2762,0	1/1:139:0,138:0:0:138:4916:-442.232,-41.5421,0	1/1:96:0,96:0:0:96:3409:-307.024,-28.8989,0	0/1:122:54,68:54:1932:68:2432:-182.41,0,-137.431	1/1:72:0,72:0:0:72:2546:-229.389,-21.6742,0	1/1:82:0,82:0:0:82:2918:-262.855,-24.6845,0	1/1:140:0,140:0:0:140:4997:-449.877,-42.1442,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:116:56,59:56:2008:59:2112:-155.371,0,-146.015	1/1:112:0,112:0:0:112:4012:-361.269,-33.7154,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:122:0,122:0:0:122:4353:-391.945,-36.7257,0	0/1:73:43,30:43:1532:30:1057:-73.4591,0,-116.198	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	1/1:88:0,88:0:0:88:3133:-282.195,-26.4906,0	0/1:142:61,80:61:2192:80:2849:-213.842,0,-154.74	.:.:.:.:.:.:.:.	0/1:101:45,56:45:1612:56:2004:-150.23,0,-114.966	1/1:160:1,159:1:32:159:5663:-506.591,-44.9655,0	1/1:95:1,94:1:36:94:3366:-299.557,-24.9996,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	0/1:147:62,85:62:2208:85:3031:-228.768,0,-154.734	1/1:106:0,106:0:0:106:3755:-338.139,-31.9092,0	1/1:90:2,88:2:72:88:3112:-273.469,-20.256,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:58:0,58:0:0:58:2060:-185.669,-17.4597,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:114:50,64:50:1792:64:2296:-172.584,0,-127.245	1/1:110:0,110:0:0:110:3924:-353.354,-33.1133,0	1/1:345:2,343:2:72:343:12239:-1094.5,-97.0186,0	1/1:120:0,120:0:0:120:4293:-386.546,-36.1236,0	1/1:101:0,101:0:0:101:3624:-326.362,-30.404,0	1/1:99:1,98:1:36:98:3484:-310.155,-26.2037,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:92:51,41:51:1828:41:1467:-104.631,0,-137.106	1/1:76:2,74:2:68:74:2635:-230.939,-16.4206,0	0/1:136:66,70:66:2372:70:2497:-184.043,0,-172.797	1/1:61:0,61:0:0:61:2184:-196.815,-18.3628,0	1/1:130:0,130:0:0:130:4647:-418.39,-39.1339,0	0/1:52:36,16:36:1292:16:561:-35.1636,0,-100.93	0/1:141:82,59:82:2933:59:2088:-145.743,0,-221.757	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:92:47,45:47:1688:45:1602:-116.774,0,-124.512	0/1:88:40,48:40:1428:48:1705:-127.174,0,-102.327	0/1:131:55,76:55:1976:76:2728:-206.323,0,-138.68	0/1:203:96,107:96:3456:107:3823:-283.158,0,-250.142	0/1:113:80,33:80:2860:33:1180:-72.4917,0,-223.621	1/1:166:1,165:1:36:165:5907:-528.141,-46.3727,0	1/1:137:1,136:1:36:136:4780:-426.76,-37.6428,0
chr10	1334177	.	G	C	34256.3	PASS	AB=0.515841;ABP=11.5408;AC=50;AF=0.265957;AN=188;AO=2030;CIGAR=1X;DP=7615;DPB=7615;DPRA=1.08063;EPP=4402.42;EPPR=11951.1;GTI=1;LEN=1;MEANALT=1.03774;MQM=59.997;MQMR=59.9885;NS=94;NUMALT=1;ODDS=4.84425;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72345;QR=199294;RO=5582;RPL=0;RPP=4411.1;RPPR=11951.1;RPR=2030;RUN=1;SAF=2029;SAP=4402.42;SAR=1;SRF=5582;SRP=12124.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:18,13:18:644:13:468:-33.1277,0,-48.9587	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/1:58:25,33:25:888:33:1162:-87.4253,0,-62.7793	0/1:116:60,56:60:2141:56:1989:-144.362,0,-158.036	0/1:16:12,4:12:417:4:140:-8.1281,0,-33.0437	0/1:40:13,27:13:449:27:954:-74.134,0,-28.6963	0/1:115:52,63:52:1853:63:2260:-169.044,0,-132.429	0/1:127:65,62:65:2323:62:2207:-160.664,0,-170.909	0/1:80:50,30:50:1785:30:1074:-72.89,0,-136.848	0/1:103:57,46:57:2033:46:1623:-115.352,0,-152.234	0/1:112:60,52:60:2117:52:1851:-133.154,0,-157.079	0/1:80:35,45:35:1256:45:1603:-120.477,0,-89.2629	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.383	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.623	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.722	0/1:127:73,54:73:2605:54:1923:-135.115,0,-196.466	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:41:22,19:22:792:19:674:-48.6449,0,-59.2634	0/1:65:30,35:30:1061:35:1248:-93.0579,0,-76.2324	0/1:97:36,61:36:1292:61:2184:-167.626,0,-87.3839	0/1:39:9,30:9:324:30:1054:-83.429,0,-17.7657	0/1:75:43,32:43:1540:32:1144:-80.6923,0,-116.316	0/1:112:60,52:60:2144:52:1868:-134.684,0,-159.512	0/1:38:14,24:14:504:24:852:-65.5607,0,-34.259	0/0:228:221,6:221:7864:6:216:0,-48.8689,-688.001	0/0:140:140,0:140:4990:0:0:0,-42.1442,-449.247	0/1:45:19,26:19:676:26:936:-71.0131,0,-47.6216	0/1:120:50,70:50:1788:70:2496:-188.77,0,-125.079	0/1:120:71,48:71:2532:48:1711:-118.132,0,-191.989	0/0:139:138,0:138:4909:0:0:0,-41.5421,-441.603	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:16:10,6:10:352:6:216:-14.974,0,-27.2017	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:214:214,0:214:7665:0:0:0,-64.4204,-689.883	0/1:190:86,104:86:3077:104:3724:-278.165,0,-219.961	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.734	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:100:41,59:41:1476:59:2108:-159.886,0,-103.033	0/1:45:25,20:25:891:20:720:-51.5824,0,-66.9624	0/1:54:22,32:22:784:32:1135:-86.2024,0,-54.6283	0/1:100:48,52:48:1720:52:1856:-137.217,0,-124.983	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:67:67,0:67:2385:0:0:0,-20.169,-214.906	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:145:49,96:49:1756:96:3432:-265.445,0,-114.675	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:124:124,0:124:4439:0:0:0,-37.3277,-399.68	0/0:110:110,0:110:3937:0:0:0,-33.1133,-354.52	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:78:32,46:32:1133:46:1619:-122.517,0,-78.7963	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/1:27:13,14:13:468:14:500:-37.2084,0,-34.3318	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/1:141:77,64:77:2768:64:2272:-162.296,0,-206.915	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:179:86,93:86:3065:93:3314:-244.595,0,-222.194	0/0:165:164,1:164:5847:1:36:0,-46.0717,-522.741	0/0:79:78,1:78:2766:1:36:0,-20.1831,-245.581	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/1:39:21,18:21:752:18:640:-46.1891,0,-56.2661	0/0:50:49,1:49:1748:1:36:0,-11.4532,-154.006	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:80:80,0:80:2827:0:0:0,-24.0824,-254.665	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/1:80:38,42:38:1349:42:1496:-110.852,0,-97.6259	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:127:127,0:127:4530:0:0:0,-38.2308,-407.865	0/0:142:142,0:142:5077:0:0:0,-42.7463,-457.073	0/0:70:70,0:70:2474:0:0:0,-21.0721,-222.904	0/0:120:120,0:120:4293:0:0:0,-36.1236,-386.537	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:88:37,51:37:1313:51:1828:-138.31,0,-91.9791	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.382	0/1:125:53,72:53:1881:72:2561:-193.11,0,-131.938	0/0:137:137,0:137:4888:0:0:0,-41.2411,-440.071	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	0/1:101:51,50:51:1809:50:1783:-130.348,0,-132.556	0/1:157:88,69:88:3151:69:2463:-174.662,0,-236.553	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433	0/1:71:42,29:42:1500:29:1040:-72.5412,0,-113.921	0/1:67:31,36:31:1112:36:1296:-96.7749,0,-80.2223	0/1:77:42,35:42:1508:35:1248:-89.4456,0,-112.835	0/1:152:77,75:77:2737:75:2658:-193.708,0,-200.815	0/1:80:31,49:31:1112:49:1719:-130.911,0,-76.3089	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:98:98,0:98:3499:0:0:0,-29.5009,-315.121
chr10	1360052	.	T	C	406792	PASS	AB=0.455911;ABP=227.803;AC=136;AF=0.723404;AN=188;AO=15540;CIGAR=1X;DP=22804;DPB=22804;DPRA=0;EPP=33739;EPPR=15752.7;GTI=3;LEN=1;MEANALT=1.07447;MQM=59.9772;MQMR=59.767;NS=94;NUMALT=1;ODDS=5.44391;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=552155;QR=259174;RO=7257;RPL=9026;RPP=884.754;RPPR=176.298;RPR=6514;RUN=1;SAF=9025;SAP=883.351;SAR=6515;SRF=4010;SRP=177.21;SRR=3247;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:98:74,24:74:2652:24:851:-47.4085,0,-209.417	1/1:304:3,301:3:104:301:10640:-947.813,-81.8103,0	0/1:392:309,83:309:11008:83:2943:-147.099,0,-872.451	0/1:629:341,287:341:12194:287:10220:-730.479,0,-907.948	0/1:258:144,114:144:5148:114:4063:-288.19,0,-385.787	0/1:102:71,31:71:2531:31:1108:-69.3259,0,-197.32	0/1:348:148,200:148:5308:200:7091:-533.494,0,-372.999	0/1:425:271,154:271:9701:154:5458:-363.407,0,-744.209	0/1:221:167,53:167:5903:53:1832:-98.6692,0,-463.945	0/1:291:151,139:151:5424:139:4953:-358.262,0,-400.615	0/1:120:62,58:62:2216:58:2072:-150.627,0,-163.507	0/1:156:118,38:118:4232:38:1336:-73.5761,0,-334.086	1/1:94:0,94:0:0:94:3327:-299.648,-28.2968,0	1/1:179:0,179:0:0:179:6344:-571.056,-53.8844,0	1/1:177:0,177:0:0:177:6306:-567.633,-53.2823,0	1/1:142:0,142:0:0:142:5026:-452.487,-42.7463,0	0/1:102:64,38:64:2277:38:1326:-88.9331,0,-174.442	1/1:72:0,72:0:0:72:2563:-230.92,-21.6742,0	0/1:54:38,16:38:1352:16:564:-34.8347,0,-105.681	0/1:794:232,562:232:8294:562:20062:-1566.08,0,-507.395	0/1:483:215,268:215:7693:268:9547:-713.793,0,-546.43	0/1:246:178,67:178:6345:67:2392:-141.573,0,-497.177	0/1:242:147,94:147:5268:94:3328:-226.831,0,-401.302	0/1:309:138,171:138:4906:171:6092:-455.365,0,-348.641	0/1:241:118,123:118:4218:123:4389:-322.634,0,-307.242	1/1:766:3,763:3:108:763:27054:-2424.03,-220.514,0	1/1:662:2,660:2:72:660:23534:-2110.54,-192.445,0	0/1:84:39,45:39:1400:45:1591:-118.194,0,-101.003	0/1:749:416,332:416:14921:332:11830:-839.18,0,-1117.22	0/1:394:197,197:197:7019:197:7032:-513.317,0,-513.159	1/1:302:1,301:1:36:301:10697:-959.045,-87.3128,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:27:8,19:8:284:19:684:-53.7625,0,-17.7755	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:13:2,11:2:72:11:388:-31.344,0,-2.92333	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:435:0,435:0:0:435:15500:-1394.71,-130.948,0	0/1:393:212,181:212:7600:181:6406:-458.324,0,-565.708	1/1:53:1,52:1:36:52:1802:-158.857,-12.3563,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:388:175,213:175:6223:213:7623:-569.307,0,-443.36	0/1:82:35,47:35:1244:47:1680:-126.803,0,-87.5619	0/1:436:227,209:227:8077:209:7434:-537.857,0,-595.22	0/1:188:92,96:92:3270:96:3426:-251.96,0,-237.896	1/1:155:0,155:0:0:155:5518:-496.748,-46.6597,0	1/1:271:0,271:0:0:271:9537:-858.29,-81.5791,0	1/1:188:0,188:0:0:188:6675:-600.828,-56.5936,0	0/1:532:297,235:297:10642:235:8321:-588.753,0,-797.428	1/1:301:0,301:0:0:301:10694:-961.809,-90.61,0	1/1:402:0,402:0:0:402:14343:-1290.57,-121.014,0	1/1:360:0,360:0:0:360:12826:-1154.16,-108.371,0	0/1:36:23,13:23:828:13:464:-31.2604,0,-64.007	0/1:289:198,91:198:7065:91:3257:-206.35,0,-548.798	1/1:137:0,137:0:0:137:4845:-436.202,-41.2411,0	0/1:17:6,11:6:216:11:368:-28.3236,0,-14.673	1/1:397:0,397:0:0:397:14023:-1261.84,-119.509,0	0/1:142:84,58:84:3008:58:2060:-142.923,0,-228.177	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5737	0/1:44:10,34:10:356:34:1211:-96.0502,0,-19.135	0/1:199:115,84:115:4121:84:2977:-208.213,0,-311.127	0/1:228:107,121:107:3819:121:4313:-319.712,0,-275.245	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:421:253,168:253:9010:168:5997:-413.102,0,-684.048	1/1:551:4,547:4:144:547:19453:-1737.01,-152.554,0	1/1:181:0,181:0:0:181:6483:-583.554,-54.4864,0	1/1:219:1,218:1:36:218:7688:-688.362,-62.3273,0	0/1:623:319,304:319:11356:304:10794:-783.803,0,-834.322	1/1:301:0,300:0:0:300:10703:-962.818,-90.309,0	1/1:86:0,86:0:0:86:3055:-275.179,-25.8886,0	1/1:87:0,87:0:0:87:3086:-277.969,-26.1896,0	1/1:191:0,191:0:0:191:6777:-610.008,-57.4967,0	1/1:81:0,81:0:0:81:2895:-260.786,-24.3834,0	0/1:228:152,76:152:5437:76:2674:-172.267,0,-420.185	1/1:98:0,98:0:0:98:3457:-311.342,-29.5009,0	1/1:371:0,371:0:0:371:13132:-1181.7,-111.682,0	1/1:514:0,514:0:0:514:18313:-1647.76,-154.729,0	1/1:210:0,210:0:0:210:7451:-670.599,-63.2163,0	1/1:176:3,173:3:104:173:6131:-542.187,-43.2785,0	0/1:41:31,10:31:1097:10:360:-20.4021,0,-86.6958	0/1:316:186,130:186:6644:130:4610:-319.939,0,-502.733	1/1:216:0,216:0:0:216:7595:-682.576,-65.0225,0	0/1:617:318,299:318:11402:299:10684:-775.732,0,-840.181	1/1:198:0,198:0:0:198:7022:-632.042,-59.6039,0	1/1:167:0,167:0:0:167:5960:-536.507,-50.272,0	0/1:222:124,98:124:4416:98:3464:-245.143,0,-330.783	0/1:339:170,169:170:6070:169:5994:-437.518,0,-444.285	1/1:50:0,50:0:0:50:1763:-158.953,-15.0515,0	0/1:121:74,47:74:2617:47:1655:-112.809,0,-199.334	0/1:123:86,37:86:3084:37:1312:-81.355,0,-240.631	0/1:100:52,48:52:1860:48:1697:-122.911,0,-137.577	0/1:210:112,98:112:3965:98:3474:-249.654,0,-293.67	0/1:184:124,60:124:4417:60:2106:-134.416,0,-342.294	1/1:91:1,90:1:36:90:3197:-284.354,-23.7955,0	1/1:263:0,263:0:0:263:9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chr10	1360111	.	G	A	54728.1	PASS	AB=0.480299;ABP=26.0263;AC=52;AF=0.276596;AN=188;AO=3285;CIGAR=1X;DP=11973;DPB=11973;DPRA=1.09496;EPP=7136.3;EPPR=18849.2;GTI=1;LEN=1;MEANALT=1.08929;MQM=59.5324;MQMR=59.9699;NS=94;NUMALT=1;ODDS=0.658138;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117490;QR=311306;RO=8679;RPL=3285;RPP=7136.3;RPPR=18849.2;RPR=0;RUN=1;SAF=0;SAP=7136.3;SAR=3285;SRF=0;SRP=18849.2;SRR=8679;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:41,44:41:1468:44:1572:-116.181,0,-106.829	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/1:417:191,226:191:6856:226:8074:-601.062,0,-491.576	0/1:236:109,126:109:3901:126:4513:-335.134,0,-280.18	0/1:165:68,97:68:2436:97:3450:-261.032,0,-169.814	0/1:64:32,32:32:1148:32:1152:-84.7161,0,-84.3639	0/1:161:99,62:99:3536:62:2213:-150.898,0,-269.984	0/1:176:85,91:85:3044:91:3268:-241.301,0,-221.208	0/1:177:79,98:79:2814:98:3520:-263.709,0,-200.214	0/1:97:52,45:52:1860:45:1605:-115.538,0,-138.48	0/1:70:32,38:32:1144:38:1364:-101.906,0,-82.1974	0/1:135:61,73:61:2187:73:2605:-193.986,0,-156.394	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.538	0/0:91:91,0:91:3257:0:0:0,-27.3937,-292.858	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.582	0/1:51:27,24:27:972:24:864:-62.686,0,-72.4454	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:42:21,21:21:756:21:752:-55.3548,0,-55.724	0/1:516:422,94:422:15144:94:3376:-148.667,0,-1207.34	0/1:247:132,115:132:4740:115:4115:-295.697,0,-352.389	0/1:109:30,79:30:1080:79:2829:-222.032,0,-64.701	0/1:145:67,78:67:2408:78:2770:-205.844,0,-173.327	0/1:113:72,41:72:2580:41:1457:-97.1876,0,-198.433	0/1:149:83,66:83:2980:66:2345:-166.441,0,-223.578	0/0:289:286,3:286:10261:3:108:0,-76.9225,-913.33	0/0:379:379,0:379:13572:0:0:0,-114.09,-1221.22	0/1:44:26,18:26:936:18:648:-45.3973,0,-71.3141	0/1:266:137,129:137:4913:129:4620:-335.883,0,-362.244	0/1:151:91,60:91:3264:60:2152:-148.357,0,-248.525	0/0:116:115,0:115:4128:0:0:0,-34.6184,-371.477	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:14:12,2:12:428:2:72:-2.6223,0,-34.6444	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:260:260,0:260:9340:0:0:0,-78.2678,-840.56	0/1:123:54,69:54:1940:69:2480:-186.399,0,-137.849	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:193:118,75:118:4218:75:2679:-183.252,0,-321.698	0/1:53:33,20:33:1188:20:720:-49.1696,0,-91.274	0/1:257:139,118:139:4980:118:4244:-304.498,0,-370.961	0/1:75:41,34:41:1472:34:1220:-87.4315,0,-110.199	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:148:147,0:147:5284:0:0:0,-44.2514,-475.329	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.234	0/1:226:116,110:116:4160:110:3929:-285.707,0,-306.546	0/0:151:151,0:151:5416:0:0:0,-45.4555,-487.013	0/0:143:141,0:141:5064:0:0:0,-42.4452,-455.543	0/0:147:147,0:147:5280:0:0:0,-44.2514,-475.334	0/1:25:6,19:6:216:19:684:-54.3646,0,-12.2648	0/1:219:105,113:105:3772:113:4048:-298.579,0,-273.802	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.666	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/0:195:195,0:195:6981:0:0:0,-58.7008,-628.316	0/1:86:42,44:42:1508:44:1561:-114.863,0,-110.126	0/1:8:4,4:4:144:4:140:-10.5339,0,-10.9054	0/1:15:11,4:11:396:4:129:-7.41128,0,-31.4673	0/1:127:59,68:59:2116:68:2433:-180.984,0,-152.433	0/1:117:62,55:62:2228:55:1976:-142.874,0,-165.563	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:163:59,103:59:2120:103:3692:-283.502,0,-142.089	0/0:231:231,0:231:8292:0:0:0,-69.5379,-746.281	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:90:89,1:89:3177:1:36:0,-23.4944,-282.555	0/1:219:121,98:121:4328:98:3524:-251.384,0,-323.738	0/0:229:229,0:229:8228:0:0:0,-68.9359,-740.527	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:141:68,73:68:2436:73:2601:-191.763,0,-177.05	0/0:116:116,0:116:4176:0:0:0,-34.9195,-376.02	0/0:200:200,0:200:7172:0:0:0,-60.206,-645.533	0/0:253:253,0:253:9084:0:0:0,-76.1606,-817.532	0/0:250:250,0:250:8926:0:0:0,-75.2575,-803.052	0/0:99:98,1:98:3524:1:36:0,-26.2037,-313.725	0/1:37:15,22:15:540:22:788:-60.1034,0,-37.7984	0/1:121:56,65:56:2012:65:2306:-171.346,0,-144.928	0/0:137:137,0:137:4904:0:0:0,-41.2411,-441.512	0/1:280:145,135:145:5164:135:4826:-350.013,0,-380.616	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.653	0/1:67:28,39:28:1008:39:1400:-106.129,0,-70.8673	0/1:164:80,84:80:2872:84:3005:-221.213,0,-209.348	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:78:41,37:41:1468:37:1322:-95.7912,0,-108.936	0/1:84:32,52:32:1148:52:1852:-141.633,0,-78.3433	0/1:56:24,31:24:864:31:1097:-82.2281,0,-61.2715	0/1:131:62,69:62:2228:69:2457:-181.651,0,-161.349	0/1:94:27,67:27:964:67:2393:-187.314,0,-58.78	0/0:87:86,1:86:3092:1:36:0,-22.5913,-274.905	0/0:140:140,0:140:5036:0:0:0,-42.1442,-453.383
chr10	1365497	.	C	T	12697.7	PASS	AB=0.56086;ABP=77.8108;AC=54;AF=0.287234;AN=188;AO=1312;CIGAR=1X;DP=4069;DPB=4069;DPRA=1.19867;EPP=2851.98;EPPR=5985.42;GTI=1;LEN=1;MEANALT=1.01887;MQM=28.218;MQMR=53.6036;NS=94;NUMALT=1;ODDS=0.469726;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47068;QR=98756;RO=2755;RPL=0;RPP=2851.98;RPPR=5985.42;RPR=1312;RUN=1;SAF=1312;SAP=2851.98;SAR=0;SRF=2755;SRP=5985.42;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:7:3,4:3:108:4:144:-7.18872,0,-7.71399	0/0:46:46,0:46:1648:0:0:0,-13.8474,-147.215	0/1:63:25,38:25:892:38:1368:-68.6258,0,-61.3619	0/1:74:43,31:43:1544:31:1112:-58.0096,0,-116.864	0/1:21:9,12:9:324:12:432:-22.7691,0,-23.0669	0/1:13:9,4:9:324:4:144:-5.55382,0,-25.2724	0/1:56:23,33:23:828:33:1165:-67.6372,0,-57.4322	0/1:49:22,27:22:788:27:968:-46.1254,0,-56.2435	0/1:48:28,20:28:1008:20:720:-31.528,0,-76.055	0/1:31:16,14:16:576:14:504:-27.0081,0,-42.7556	0/1:47:22,25:22:792:25:900:-50.7162,0,-57.3774	0/1:56:25,31:25:896:31:1112:-54.5684,0,-63.8754	0/0:36:36,0:36:1288:0:0:0,-10.8371,-115.882	0/0:49:49,0:49:1752:0:0:0,-14.7505,-156.377	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.7983	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.398	0/1:36:14,22:14:500:22:792:-39.8306,0,-34.3891	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.117	0/1:45:21,24:21:752:24:864:-41.5571,0,-54.2102	0/1:47:20,27:20:716:27:968:-56.5751,0,-50.554	0/1:70:34,36:34:1212:36:1288:-67.1367,0,-87.2521	0/1:35:18,17:18:648:17:600:-35.6485,0,-48.0837	0/1:23:12,11:12:432:11:396:-22.104,0,-32.2692	0/1:68:31,37:31:1116:37:1324:-70.3918,0,-79.6842	0/1:23:15,8:15:540:8:288:-13.0506,0,-41.7535	0/0:71:71,0:71:2544:0:0:0,-21.3731,-228.679	0/0:86:86,0:86:3084:0:0:0,-25.8886,-276.538	0/1:29:13,16:13:468:16:576:-30.7842,0,-33.6517	0/1:126:55,71:55:1976:71:2556:-152.114,0,-139.968	0/1:65:31,34:31:1112:34:1216:-65.875,0,-80.5565	0/0:59:59,0:59:2120:0:0:0,-17.7608,-190.09	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6343	0/1:8:2,6:2:72:6:216:-12.6409,0,-4.41879	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0498	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8078	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.2943	0/0:93:93,0:93:3319:0:0:0,-27.9958,-298.518	0/1:104:47,57:47:1684:57:2048:-108.354,0,-119.623	0/0:59:59,0:59:2104:0:0:0,-17.7608,-188.263	1/1:2:0,2:0:0:2:72:-5.19878,-0.60206,0	0/1:51:23,28:23:824:28:1004:-52.9385,0,-58.7035	0/1:31:13,18:13:468:18:644:-34.8659,0,-33.0712	0/1:57:23,34:23:820:34:1224:-66.2561,0,-56.5017	0/1:17:6,11:6:212:11:396:-23.2776,0,-14.2944	0/0:33:33,0:33:1176:0:0:0,-9.93399,-105.946	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.5747	0/0:49:47,2:47:1688:2:68:0,-8.58465,-145.228	0/1:60:23,37:23:824:37:1320:-78.4286,0,-56.2015	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.0989	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.018	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.372	1/1:2:0,2:0:0:2:72:-4.92255,-0.60206,0	0/1:88:32,56:32:1152:56:2012:-102.257,0,-76.7868	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.4989	0/1:5:3,2:3:108:2:72:-3.35639,0,-8.54469	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.04	0/1:17:8,9:8:288:9:324:-18.3717,0,-20.4987	1/1:1:0,1:0:0:1:36:-3.05454,-0.30103,0	0/1:12:5,7:5:180:7:252:-15.9367,0,-12.8788	0/1:39:11,28:11:388:28:1004:-56.924,0,-23.4717	0/1:104:50,54:50:1800:54:1944:-109.907,0,-130.738	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83179	0/1:28:15,13:15:540:13:468:-26.6478,0,-40.4386	0/0:94:93,1:93:3336:1:36:0,-25.3941,-296.38	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.682	0/0:30:30,0:30:1076:0:0:0,-9.0309,-96.7376	0/1:33:13,20:13:453:20:712:-41.3171,0,-31.1314	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.873	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6333	0/0:44:44,0:44:1580:0:0:0,-13.2453,-141.861	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.506	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.462	0/1:95:39,56:39:1384:56:2012:-99.7193,0,-95.1856	0/0:47:47,0:47:1688:0:0:0,-14.1484,-151.06	0/0:59:59,0:59:2120:0:0:0,-17.7608,-190.382	0/0:68:68,0:68:2436:0:0:0,-20.47,-218.525	0/0:53:53,0:53:1904:0:0:0,-15.9546,-169.838	0/0:52:52,0:52:1868:0:0:0,-15.6536,-167.731	0/1:5:4,1:4:144:1:36:-1.05356,0,-11.775	0/1:62:24,38:24:856:38:1368:-74.8674,0,-58.5338	0/0:52:51,0:51:1820:0:0:0,-15.3525,-162.978	0/1:81:30,51:30:1068:51:1827:-107.293,0,-71.9591	0/0:54:54,0:54:1936:0:0:0,-16.2556,-173.378	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.655	0/1:40:19,21:19:684:21:752:-43.0072,0,-49.718	0/1:69:37,32:37:1324:32:1152:-62.9684,0,-98.5943	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.042	0/1:57:21,36:21:752:36:1296:-65.573,0,-50.6468	0/1:57:31,26:31:1112:26:936:-42.5532,0,-82.7298	0/1:34:11,23:11:396:23:824:-45.8722,0,-25.5706	0/1:101:33,68:33:1188:68:2432:-134.496,0,-76.6322	0/1:38:8,30:8:288:30:1072:-67.2055,0,-14.8093	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6675	0/0:54:54,0:54:1944:0:0:0,-16.2556,-174.795
chr10	1365516	.	GCA	GCG,ACG	75300.3	PASS	AB=0.427773,0.570937;ABP=108.406,104.676;AC=134,54;AF=0.712766,0.287234;AN=188;AO=2696,1334;CIGAR=2M1X,1X1M1X;DP=4040;DPB=4040;DPRA=26.6044,1.20904;EPP=5702,2891.08;EPPR=11.6962;GTI=1;LEN=1,3;MEANALT=1.6044,1.98077;MQM=53.6213,28.2114;MQMR=60;NS=94;NUMALT=2;ODDS=0.102026;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=96159,45475;QR=129;RO=4;RPL=18,1;RPP=5702,2891.08;RPPR=11.6962;RPR=2678,1333;RUN=1,1;SAF=2696,1334;SAP=5857.3,2899.75;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:6:0,2,4:0:0:2,4:68,136:-13.3909,-7.98212,-7.38006,-5.71308,0,-4.50896	1/1:44:3,41,0:3:93:41,0:1439,0:-120.541,-4.5671,0,-121.444,-12.3422,-128.907	1/2:64:0,25,39:0:0:25,39:900,1369:-149.783,-77.5168,-69.991,-72.581,0,-60.8408	1/2:74:0,43,31:0:0:43,31:1544,1078:-195.775,-69.8998,-56.9555,-126.19,0,-116.858	1/2:22:0,9,13:0:0:9,13:324,455:-53.5956,-27.236,-24.5268,-26.6793,0,-22.7659	1/2:13:0,9,4:0:0:9,4:324,144:-34.453,-8.26309,-5.55382,-26.4765,0,-25.2724	1/2:57:0,23,34:0:0:23,34:812,1157:-141.129,-75.4451,-68.5214,-66.0055,0,-55.7705	1/2:49:0,20,29:0:0:20,29:720,982:-114.168,-55.6113,-49.5907,-58.8687,0,-50.1389	1/2:47:0,27,20:0:0:27,20:972,667:-117.976,-39.0465,-30.9187,-79.2244,0,-73.2038	1/2:30:0,16,14:0:0:16,14:567,480:-77.7116,-31.6025,-26.786,-46.4244,0,-42.21	1/2:47:0,22,25:0:0:22,25:788,838:-119.323,-55.096,-48.4733,-64.5472,0,-57.0214	1/2:55:0,24,31:0:0:24,31:864,1038:-130.882,-60.5588,-53.3341,-70.6339,0,-61.3019	1/1:36:0,36,0:0:0:36,0:1283,0:-115.442,-10.8371,0,-115.442,-10.8371,-115.442	1/1:48:0,47,0:0:0:47,0:1674,0:-150.027,-14.1484,0,-150.027,-14.1484,-150.027	1/1:28:0,28,0:0:0:28,0:1004,0:-90.5139,-8.42884,0,-90.5139,-8.42884,-90.5139	1/1:39:0,39,0:0:0:39,0:1387,0:-124.914,-11.7402,0,-124.914,-11.7402,-124.914	1/2:35:0,13,22:0:0:13,22:464,728:-80.4548,-42.6882,-38.7748,-38.0823,0,-31.4596	1/1:40:0,40,0:0:0:40,0:1436,0:-128.95,-12.0412,0,-128.95,-12.0412,-128.95	1/2:47:0,20,27:0:0:20,27:716,921:-111.495,-53.3024,-47.2818,-58.5043,0,-50.3765	1/2:48:0,20,28:0:0:20,28:720,947:-121.687,-62.9724,-56.9518,-59.0414,0,-50.6126	1/2:67:0,31,36:0:0:31,36:1083,1210:-162.491,-74.7931,-65.4611,-88.007,0,-77.1699	1/2:35:0,18,17:0:0:18,17:644,591:-93.2905,-40.7769,-35.3584,-52.8405,0,-47.7229	1/2:23:0,12,10:0:0:12,10:432,342:-57.7585,-22.4982,-18.8858,-35.2849,0,-32.2746	1/2:65:0,28,37:0:0:28,37:1008,1311:-161.355,-79.5265,-71.0977,-82.149,0,-71.0109	1/2:22:0,14,8:0:0:14,8:504,284:-58.4168,-17.4916,-13.2772,-41.2288,0,-38.8206	1/1:68:0,68,0:0:0:68,0:2423,0:-218.065,-20.47,0,-218.065,-20.47,-218.065	1/1:84:0,84,0:0:0:84,0:2986,0:-267.984,-25.2865,0,-267.984,-25.2865,-267.984	1/2:28:0,12,16:0:0:12,16:432,518:-68.3923,-33.1745,-29.5621,-35.5353,0,-30.7188	1/2:125:0,54,71:0:0:54,71:1913,2369:-317.123,-161.374,-145.118,-156.073,0,-134.7	1/2:64:0,30,34:0:0:30,34:1072,1133:-160.261,-73.0387,-64.0078,-87.5387,0,-77.3037	1/1:56:0,56,0:0:0:56,0:1997,0:-179.033,-16.8577,0,-179.033,-16.8577,-179.033	1/1:7:0,7,0:0:0:7,0:244,0:-22.2724,-2.10721,0,-22.2724,-2.10721,-22.2724	1/2:8:0,2,6:0:0:2,6:72,190:-18.1831,-12.2917,-11.6896,-6.22497,0,-4.41879	1/1:3:0,3,0:0:0:3,0:108,0:-10.0498,-0.90309,0,-10.0498,-0.90309,-10.0498	1/1:7:0,7,0:0:0:7,0:248,0:-22.5972,-2.10721,0,-22.5972,-2.10721,-22.5972	1/1:9:0,9,0:0:0:9,0:324,0:-29.4221,-2.70927,0,-29.4221,-2.70927,-29.4221	1/1:93:0,92,0:0:0:92,0:3291,0:-295.703,-27.6948,0,-295.703,-27.6948,-295.703	1/2:102:0,43,58:0:0:43,58:1516,1973:-245.11,-122.09,-109.145,-123.085,0,-105.625	1/1:60:0,60,0:0:0:60,0:2144,0:-191.828,-18.0618,0,-191.828,-18.0618,-191.828	2/2:2:0,0,2:0:0:0,2:0,57:-4.51988,-4.51988,-4.51988,-0.60206,-0.60206,0	1/2:52:0,22,30:0:0:22,30:779,1010:-126.522,-63.2855,-56.6629,-63.553,0,-54.5221	1/2:32:0,13,19:0:0:13,19:468,622:-77.5135,-39.3435,-35.4301,-38.4898,0,-32.7702	1/2:57:0,23,34:0:0:23,34:828,1186:-139.423,-72.2916,-65.3679,-67.4528,0,-57.2178	1/2:17:0,6,11:0:0:6,11:216,389:-42.562,-24.9243,-23.1181,-17.9701,0,-14.6587	1/1:33:0,33,0:0:0:33,0:1176,0:-105.945,-9.93399,0,-105.945,-9.93399,-105.945	1/1:12:0,12,0:0:0:12,0:432,0:-39.0278,-3.61236,0,-39.0278,-3.61236,-39.0278	1/1:47:0,47,0:0:0:47,0:1663,0:-148.969,-14.1484,0,-148.969,-14.1484,-148.969	1/2:59:0,22,37:0:0:22,37:788,1231:-145.961,-81.8857,-75.263,-64.4032,0,-53.2651	1/1:25:0,25,0:0:0:25,0:883,0:-79.6546,-7.52575,0,-79.6546,-7.52575,-79.6546	1/1:37:0,36,0:0:0:36,0:1267,0:-113.711,-10.8371,0,-113.711,-10.8371,-113.711	1/1:74:0,74,0:0:0:74,0:2608,0:-234.617,-22.2762,0,-234.617,-22.2762,-234.617	2/2:2:0,0,2:0:0:0,2:0,72:-4.92255,-4.92255,-4.92255,-0.60206,-0.60206,0	1/2:90:0,32,58:0:0:32,58:1148,1979:-207.199,-114.229,-104.596,-93.2891,0,-75.8294	1/1:15:0,15,0:0:0:15,0:528,0:-47.543,-4.51545,0,-47.543,-4.51545,-47.543	1/2:5:0,3,2:0:0:3,2:108,72:-13.1091,-4.25948,-3.35639,-9.14675,0,-8.54469	1/1:34:0,33,0:0:0:33,0:1167,0:-104.778,-9.93399,0,-104.778,-9.93399,-104.778	1/2:17:0,8,9:0:0:8,9:277,308:-42.7581,-20.3408,-17.9326,-22.7318,0,-20.0226	2/2:1:0,0,1:0:0:0,1:0,36:-3.05454,-3.05454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chr10	1365554	.	G	A	13453.6	PASS	AB=0.579892;ABP=126.531;AC=54;AF=0.287234;AN=188;AO=1301;CIGAR=1X;DP=3845;DPB=3845;DPRA=1.26374;EPP=2690.83;EPPR=5522.89;GTI=2;LEN=1;MEANALT=1.01818;MQM=28.6218;MQMR=53.644;NS=94;NUMALT=1;ODDS=0.624962;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45936;QR=88619;RO=2542;RPL=1285;RPP=2690.83;RPPR=5522.89;RPR=16;RUN=1;SAF=1301;SAP=2828.1;SAR=0;SRF=2542;SRP=5522.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:2,4:2:53:4:144:-7.48975,0,-3.19323	0/0:41:41,0:41:1407:0:0:0,-12.3422,-125.848	0/1:62:25,37:25:870:37:1309:-65.4191,0,-58.7654	0/1:68:38,30:38:1343:30:1060:-56.938,0,-100.607	0/1:32:8,24:8:280:24:860:-58.0049,0,-15.8052	0/1:14:9,5:9:320:5:180:-8.51203,0,-24.6128	0/1:52:19,33:19:660:33:1153:-68.8581,0,-43.7565	0/1:46:21,25:21:725:25:865:-41.8998,0,-50.8938	0/1:42:23,19:23:807:19:667:-30.8118,0,-59.9516	0/1:28:15,13:15:520:13:460:-25.1346,0,-38.5865	0/1:45:20,25:20:712:25:896:-51.2143,0,-50.7938	0/1:54:23,31:23:808:31:1112:-55.1705,0,-56.5931	0/0:34:34,0:34:1190:0:0:0,-10.235,-107.114	0/0:46:46,0:46:1590:0:0:0,-13.8474,-142.177	0/0:27:27,0:27:943:0:0:0,-8.12781,-85.1153	0/0:36:36,0:36:1230:0:0:0,-10.8371,-110.837	0/1:35:13,22:13:444:22:788:-40.0812,0,-29.6735	0/0:39:39,0:39:1310:0:0:0,-11.7402,-117.716	0/1:44:19,25:19:663:25:892:-44.7712,0,-46.5698	0/1:45:18,27:18:644:27:942:-56.2844,0,-44.6987	0/1:66:31,35:31:1075:35:1219:-65.2149,0,-76.4226	0/1:35:17,18:17:604:18:644:-39.1718,0,-44.1258	0/1:21:11,10:11:378:10:360:-20.0935,0,-28.0057	0/1:63:28,35:28:978:35:1239:-66.8564,0,-68.9392	0/1:20:12,8:12:428:8:280:-13.8049,0,-32.5951	0/0:66:66,0:66:2275:0:0:0,-19.868,-204.814	0/0:80:80,0:80:2791:0:0:0,-24.0824,-250.561	0/1:28:12,16:12:401:16:572:-31.0113,0,-27.9239	0/1:122:52,70:52:1834:70:2478:-149.457,0,-128.403	0/1:62:30,32:30:1050:32:1123:-59.9434,0,-75.9329	0/0:57:56,0:56:1943:0:0:0,-16.8577,-174.479	0/0:7:7,0:7:235:0:0:0,-2.10721,-21.455	0/1:8:2,6:2:72:6:216:-12.6409,0,-4.41879	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.1307	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9711	0/0:88:87,1:87:3000:1:36:0,-22.9545,-266.463	0/1:100:44,56:44:1541:56:1961:-108.231,0,-108.48	0/0:56:56,0:56:1923:0:0:0,-16.8577,-172.555	1/1:2:0,2:0:0:2:72:-5.19878,-0.60206,0	0/1:48:20,28:20:703:28:996:-54.3031,0,-48.7924	0/1:29:11,18:11:383:18:640:-35.0657,0,-26.0292	0/1:53:19,34:19:672:34:1212:-67.2394,0,-44.4229	0/1:16:6,10:6:216:10:360:-20.9655,0,-14.9598	0/0:28:28,0:28:963:0:0:0,-8.42884,-86.7934	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.214	0/0:43:43,0:43:1504:0:0:0,-12.9443,-134.795	0/1:57:20,36:20:700:36:1263:-76.0136,0,-45.9445	0/0:23:23,0:23:796:0:0:0,-6.92369,-71.8433	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.348	0/0:71:71,0:71:2515:0:0:0,-21.3731,-226.277	1/1:2:0,2:0:0:2:72:-4.92255,-0.60206,0	0/1:86:31,55:31:1077:55:1921:-99.8159,0,-70.7936	0/0:15:14,1:14:500:1:34:0,-1.15683,-41.6074	0/1:4:2,2:2:72:2:68:-3.6044,0,-5.61541	0/0:32:32,0:32:1103:0:0:0,-9.63296,-99.2726	0/1:15:7,8:7:248:8:276:-16.0999,0,-18.1336	1/1:1:0,1:0:0:1:36:-3.05454,-0.30103,0	0/1:12:5,7:5:180:7:239:-15.3615,0,-12.8788	0/1:37:11,26:11:392:26:919:-52.3052,0,-24.4337	0/1:98:45,53:45:1591:53:1874:-108.003,0,-113.847	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45426	0/1:28:15,13:15:513:13:451:-26.0626,0,-37.9974	0/0:81:80,1:80:2790:1:36:0,-21.4807,-247.542	0/0:30:30,0:30:1051:0:0:0,-9.0309,-94.7435	0/0:29:29,0:29:1027:0:0:0,-8.72987,-92.3327	0/1:31:12,19:12:428:19:664:-39.3826,0,-29.5	0/0:31:31,0:31:1067:0:0:0,-9.33193,-96.244	0/0:13:13,0:13:447:0:0:0,-3.91339,-40.5099	0/0:41:41,0:41:1443:0:0:0,-12.3422,-129.598	0/0:46:46,0:46:1620:0:0:0,-13.8474,-145.936	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7558	0/1:87:33,54:33:1122:54:1878:-96.4091,0,-74.1099	0/0:46:45,1:45:1586:1:34:0,-10.4739,-138.766	0/0:53:53,0:53:1853:0:0:0,-15.9546,-166.431	0/0:66:66,0:66:2343:0:0:0,-19.868,-210.61	0/0:46:46,0:46:1605:0:0:0,-13.8474,-144.073	0/0:49:49,0:49:1736:0:0:0,-14.7505,-156.127	0/1:4:3,1:3:104:1:36:-1.35459,0,-8.47841	0/1:60:25,35:25:864:35:1244:-67.8104,0,-59.879	0/0:48:48,0:48:1692:0:0:0,-14.4494,-151.476	0/1:75:28,47:28:988:47:1668:-98.8012,0,-66.5922	0/0:48:48,0:48:1649:0:0:0,-14.4494,-147.729	0/0:41:41,0:41:1447:0:0:0,-12.3422,-130.175	0/1:40:19,21:19:656:21:748:-42.9032,0,-47.2011	0/1:65:32,33:32:1128:33:1176:-66.5036,0,-82.1902	0/0:20:20,0:20:695:0:0:0,-6.0206,-62.7344	0/1:57:19,38:19:640:38:1360:-70.2382,0,-40.6449	0/1:57:31,26:31:1062:26:918:-42.3301,0,-78.2884	0/1:35:11,24:11:376:24:856:-48.0805,0,-23.47	0/1:100:31,69:31:1048:69:2425:-136.231,0,-64.3972	0/1:36:7,29:7:243:29:1004:-63.6898,0,-11.3559	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7076	0/0:50:50,0:50:1728:0:0:0,-15.0515,-155.481
chr10	1365635	.	T	C	23505.7	PASS	AB=0.467103;ABP=30.2984;AC=52;AF=0.27957;AN=186;AO=1364;CIGAR=1X;DP=5319;DPB=5319;DPRA=1.01995;EPP=2635.83;EPPR=7535.44;GTI=4;LEN=1;MEANALT=1.03704;MQM=59.9721;MQMR=59.9805;NS=93;NUMALT=1;ODDS=0.136045;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48586;QR=141767;RO=3953;RPL=1325;RPP=2635.83;RPPR=7535.44;RPR=39;RUN=1;SAF=0;SAP=2964.9;SAR=1364;SRF=0;SRP=8586.84;SRR=3953;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:142:85,57:85:3037:57:2021:-139.415,0,-230.812	0/1:134:69,65:69:2480:65:2328:-169.442,0,-183.115	0/1:34:11,23:11:396:23:828:-64.6091,0,-25.7477	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/1:55:32,23:32:1148:23:828:-58.2875,0,-87.0732	0/1:69:44,25:44:1576:25:896:-60.1893,0,-121.36	0/1:20:8,12:8:288:12:428:-32.8382,0,-20.2468	0/1:70:39,31:39:1385:31:1081:-76.5239,0,-103.875	0/1:45:22,23:22:792:23:807:-59.4028,0,-58.0593	0/1:42:23,19:23:828:19:676:-48.5247,0,-62.2009	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.076	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:78:41,36:41:1476:36:1265:-90.6969,0,-109.579	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:43:22,21:22:773:21:756:-55.4229,0,-56.9452	0/1:93:58,35:58:2065:35:1260:-85.7097,0,-158.123	0/1:50:15,35:15:540:35:1248:-96.795,0,-33.885	0/1:103:59,44:59:2109:44:1557:-109.414,0,-159.071	0/1:22:6,16:6:216:16:576:-45.5523,0,-13.1679	0/1:28:21,7:21:756:7:252:-14.6001,0,-59.9384	0/1:13:8,5:8:288:5:180:-12.6371,0,-22.354	0/0:125:125,0:125:4492:0:0:0,-37.6287,-404.447	0/0:106:106,0:106:3789:0:0:0,-31.9092,-341.207	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	0/1:163:96,67:96:3422:67:2403:-167.459,0,-259.123	0/1:103:64,39:64:2281:39:1381:-93.5807,0,-174.544	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.037	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/1:107:52,54:52:1872:54:1913:-140.324,0,-136.637	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	.:.:.:.:.:.:.:.	0/1:95:54,41:54:1944:41:1464:-103.458,0,-146.638	0/1:42:21,21:21:752:21:752:-55.363,0,-55.363	0/1:27:14,13:14:504:13:464:-33.9697,0,-37.5703	0/1:35:15,20:15:540:20:705:-53.2367,0,-38.4005	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:76:75,1:75:2696:1:36:0,-19.28,-239.286	0/1:70:32,38:32:1148:38:1356:-101.268,0,-82.5577	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.776	0/0:153:153,0:153:5477:0:0:0,-46.0576,-493.055	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:73:45,28:45:1616:28:966:-65.272,0,-123.755	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:6:2,4:2:57:4:144:-11.5074,0,-3.60713	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/1:38:16,22:16:572:22:792:-60.1665,0,-40.3743	0/1:117:59,58:59:2116:58:2073:-151.618,0,-155.488	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:93:40,53:40:1440:53:1892:-142.562,0,-101.902	0/0:99:98,1:98:3520:1:36:0,-26.2037,-313.41	0/0:31:30,1:30:1080:1:32:0,-6.13262,-94.3139	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:64:25,39:25:896:39:1392:-106.313,0,-61.6944	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:68:30,38:30:1080:38:1356:-101.87,0,-77.0432	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:140:140,0:140:5028:0:0:0,-42.1442,-452.664	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:48:42,6:42:1512:6:216:-5.34107,0,-121.925	0/1:9:4,5:4:144:5:172:-13.1087,0,-10.6043	0/1:91:48,43:48:1728:43:1536:-111.139,0,-128.412	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/1:109:76,33:76:2736:33:1169:-72.703,0,-213.67	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:53:25,28:25:900:28:978:-72.3741,0,-65.3664	0/1:90:49,41:49:1764:41:1468:-105.323,0,-131.951	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:44:19,25:19:684:25:875:-65.8195,0,-48.645	0/1:49:24,25:24:864:25:892:-65.8492,0,-63.3321	0/1:39:22,17:22:777:17:612:-43.6733,0,-58.5102	0/1:88:45,43:45:1620:43:1544:-112.762,0,-119.599	0/1:47:13,34:13:464:34:1216:-95.5975,0,-27.9491	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.738	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144
chr10	1385716	.	G	A	192390	PASS	AB=0.482879;ABP=23.3834;AC=137;AF=0.728723;AN=188;AO=9557;CIGAR=1X;DP=13712;DPB=13712;DPRA=0;EPP=20755.8;EPPR=9016.79;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9826;MQMR=59.9831;NS=94;NUMALT=1;ODDS=1.96478;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=337631;QR=148549;RO=4151;RPL=0;RPP=20755.8;RPPR=9016.79;RPR=9557;RUN=1;SAF=9557;SAP=20755.8;SAR=0;SRF=4151;SRP=9016.79;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:107:59,48:59:2120:48:1709:-121.182,0,-158.858	1/1:218:1,217:1:36:217:7641:-684.129,-62.0263,0	0/1:259:110,149:110:3936:149:5321:-401.057,0,-276.466	0/1:398:172,226:172:6157:226:7985:-598.861,0,-433.927	0/1:106:57,49:57:2040:49:1711:-122.36,0,-151.963	0/1:68:40,28:40:1432:28:989:-68.852,0,-108.708	0/1:140:85,55:85:3048:55:1942:-132.908,0,-232.405	0/1:258:140,118:140:4998:118:4165:-297.363,0,-372.288	0/1:218:112,106:112:4002:106:3721:-269.463,0,-294.742	0/1:125:70,55:70:2520:55:1901:-133.73,0,-189.422	0/1:37:16,21:16:576:21:756:-57.2291,0,-41.0369	0/1:109:54,55:54:1931:55:1972:-144.943,0,-141.254	1/1:71:0,71:0:0:71:2533:-228.22,-21.3731,0	1/1:56:0,56:0:0:56:2001:-180.362,-16.8577,0	1/1:82:0,82:0:0:82:2902:-261.414,-24.6845,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:42:21,21:21:756:21:752:-55.363,0,-55.724	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	0/1:336:188,148:188:6726:148:5259:-372.3,0,-504.265	0/1:301:134,166:134:4808:166:5828:-434.003,0,-342.245	0/1:282:200,82:200:7184:82:2914:-177.602,0,-561.722	0/1:292:154,138:154:5528:138:4858:-349.426,0,-409.743	0/1:122:75,47:75:2673:47:1646:-111.698,0,-204.088	0/1:116:57,59:57:2048:59:2071:-151.736,0,-149.672	1/1:330:0,330:0:0:330:11535:-1038.03,-99.3399,0	1/1:348:0,348:0:0:348:12214:-1099.11,-104.758,0	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:420:258,162:258:9223:162:5733:-389.647,0,-703.602	0/1:370:172,198:172:6139:198:7013:-519.852,0,-441.225	1/1:251:0,251:0:0:251:8875:-798.74,-75.5585,0	1/1:17:0,17:0:0:17:597:-54.0561,-5.11751,0	0/1:68:36,32:36:1277:32:1152:-83.5201,0,-94.7611	1/1:26:0,26:0:0:26:906:-81.8509,-7.82678,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:184:1,183:1:32:183:6524:-584.046,-52.1902,0	0/1:295:168,127:168:6040:127:4459:-312.672,0,-454.897	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:204:81,123:81:2908:123:4359:-331.075,0,-200.545	0/1:17:5,12:5:180:12:417:-32.7427,0,-11.4346	0/1:326:147,179:147:5246:179:6234:-462.991,0,-374.139	0/1:37:21,16:21:752:16:576:-41.0369,0,-56.8681	1/1:41:0,41:0:0:41:1411:-127.279,-12.3422,0	1/1:238:0,238:0:0:238:8372:-753.489,-71.6451,0	1/1:184:0,184:0:0:184:6505:-585.528,-55.3895,0	0/1:329:159,170:159:5670:170:6039:-444.575,0,-411.379	1/1:170:0,170:0:0:170:6039:-543.614,-51.1751,0	1/1:165:0,165:0:0:165:5883:-529.579,-49.67,0	1/1:218:0,218:0:0:218:7665:-689.888,-65.6245,0	0/1:15:9,6:9:320:6:201:-13.9016,0,-24.6269	0/1:209:115,94:115:4121:94:3342:-238.08,0,-308.157	1/1:131:0,131:0:0:131:4631:-416.943,-39.4349,0	0/1:36:17,19:17:612:19:684:-51.0532,0,-44.5764	1/1:205:0,205:0:0:205:7133:-642.03,-61.7112,0	0/1:143:78,65:78:2808:65:2301:-164.303,0,-209.911	0/1:38:20,18:20:716:18:633:-45.8559,0,-53.3286	0/1:21:15,6:15:540:6:212:-13.1032,0,-42.6149	0/1:136:72,64:72:2580:64:2262:-162.9,0,-191.505	0/1:72:25,47:25:900:47:1679:-129.723,0,-59.6469	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:286:149,137:149:5307:137:4763:-342.729,0,-391.667	1/1:277:1,276:1:36:276:9779:-876.46,-79.787,0	1/1:117:0,117:0:0:117:4170:-375.48,-35.2205,0	1/1:139:0,139:0:0:139:4958:-446.364,-41.8432,0	0/1:378:195,183:195:6958:183:6480:-469.498,0,-512.495	1/1:246:1,245:1:36:245:8618:-771.793,-70.4551,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:116:2,114:2:72:114:4062:-358.928,-28.0828,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:45:0,45:0:0:45:1581:-142.576,-13.5464,0	0/1:268:133,135:133:4741:135:4790:-350.579,0,-346.168	1/1:137:0,137:0:0:137:4810:-433.047,-41.2411,0	1/1:272:0,270:0:0:270:9534:-857.679,-81.2781,0	1/1:255:1,254:1:36:254:9040:-809.974,-73.1644,0	1/1:167:0,167:0:0:167:5923:-533.177,-50.272,0	1/1:150:2,148:2:72:148:5251:-465.887,-38.3178,0	0/1:41:24,17:24:860:17:597:-41.7139,0,-65.3796	0/1:179:107,71:107:3836:71:2533:-174.277,0,-291.493	1/1:167:2,165:2:72:165:5845:-519.323,-43.4353,0	0/1:279:131,148:131:4674:148:5225:-386.396,0,-336.832	1/1:50:0,50:0:0:50:1785:-160.931,-15.0515,0	1/1:71:1,70:1:36:70:2501:-221.743,-17.7749,0	0/1:45:23,22:23:809:22:792:-58.0593,0,-59.582	0/1:105:45,60:45:1608:60:2148:-161.979,0,-113.402	1/1:27:0,27:0:0:27:957:-86.4439,-8.12781,0	0/1:77:36,41:36:1292:41:1432:-105.992,0,-93.4045	0/1:55:31,24:31:1112:24:862:-61.3423,0,-83.8347	0/1:37:15,22:15:540:22:784:-59.7458,0,-37.7984	0/1:86:33,53:33:1173:53:1892:-144.67,0,-79.987	0/1:61:41,20:41:1472:20:705:-45.41,0,-114.413	1/1:238:1,237:1:36:237:8150:-729.922,-68.0469,0	1/1:99:1,98:1:36:98:3493:-310.982,-26.2037,0
chr10	1425588	.	T	C	41674.8	PASS	AB=0.491332;ABP=7.18876;AC=50;AF=0.265957;AN=188;AO=3159;CIGAR=1X;DP=12272;DPB=12272;DPRA=1.26427;EPP=6862.69;EPPR=19789.5;GTI=1;LEN=1;MEANALT=1;MQM=34.3729;MQMR=53.4169;NS=94;NUMALT=1;ODDS=3.68499;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112893;QR=325914;RO=9112;RPL=0;RPP=6862.69;RPPR=19789.5;RPR=3159;RUN=1;SAF=3159;SAP=6862.69;SAR=0;SRF=9112;SRP=19789.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:36,25:36:1275:25:896:-55.0951,0,-95.5192	0/0:651:649,2:649:23146:2:72:0,-189.634,-2070.94	0/1:153:78,75:78:2779:75:2683:-170.72,0,-203.769	0/1:266:122,144:122:4353:144:5147:-327.512,0,-310.327	0/1:53:31,22:31:1107:22:792:-47.4879,0,-83.7174	0/1:47:30,17:30:1080:17:608:-34.7646,0,-82.8953	0/1:96:50,46:50:1792:46:1652:-98.6761,0,-132.25	0/1:206:97,109:97:3476:109:3911:-248.037,0,-249.924	0/1:110:48,62:48:1720:62:2199:-145.346,0,-121.564	0/1:121:64,57:64:2288:57:2025:-124.067,0,-169.321	0/1:78:45,33:45:1616:33:1176:-69.6053,0,-121.298	0/1:70:36,34:36:1288:34:1220:-77.2483,0,-94.8381	0/0:49:49,0:49:1764:0:0:0,-14.7505,-158.491	0/0:115:115,0:115:4120:0:0:0,-34.6184,-369.631	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.236	0/0:97:97,0:97:3479:0:0:0,-29.1999,-312.405	0/1:74:42,32:42:1485:32:1148:-70.9024,0,-111.013	0/0:79:79,0:79:2832:0:0:0,-23.7814,-253.735	0/1:66:36,30:36:1270:30:1073:-67.01,0,-94.3468	0/1:333:159,174:159:5716:174:6190:-390.472,0,-412.055	0/1:208:104,104:104:3728:104:3736:-235.22,0,-272.154	0/1:138:46,92:46:1652:92:3264:-236.436,0,-106.753	0/1:108:39,69:39:1377:69:2464:-161.869,0,-91.3955	0/1:149:61,88:61:2192:88:3144:-205.854,0,-151.955	0/1:89:44,45:44:1568:45:1586:-99.3411,0,-114.428	0/0:426:426,0:426:15214:0:0:0,-128.239,-1364.46	0/0:249:248,1:248:8892:1:36:0,-71.7688,-795.105	0/1:41:22,19:22:784:19:684:-41.4574,0,-58.4457	0/1:335:175,160:175:6246:160:5703:-384.173,0,-460.376	0/1:604:346,258:346:12343:258:9250:-549.719,0,-926.134	0/0:217:217,0:217:7726:0:0:0,-65.3235,-692.168	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.8413	0/1:12:7,5:7:243:5:180:-11.0507,0,-18.5665	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7624	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6979	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2302	0/0:191:191,0:191:6860:0:0:0,-57.4967,-615.441	0/1:211:110,101:110:3940:101:3615:-223.621,0,-290.301	0/0:95:95,0:95:3420:0:0:0,-28.5978,-306.405	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/1:137:68,69:68:2440:69:2454:-152.902,0,-178.156	0/1:44:27,17:27:972:17:608:-34.3514,0,-74.2713	0/1:128:80,48:80:2861:48:1724:-98.1464,0,-218.517	0/1:79:41,38:41:1472:38:1360:-81.6766,0,-108.613	0/0:72:72,0:72:2576:0:0:0,-21.6742,-231.234	0/0:83:83,0:83:2984:0:0:0,-24.9855,-267.045	0/0:229:228,0:228:8159:0:0:0,-68.6348,-730.977	0/1:189:98,91:98:3493:91:3264:-199.707,0,-256.92	0/0:118:118,0:118:4236:0:0:0,-35.5215,-380.257	0/0:209:209,0:209:7487:0:0:0,-62.9153,-670.846	0/0:240:240,0:240:8591:0:0:0,-72.2472,-771.107	0/1:11:6,5:6:216:5:176:-11.1678,0,-16.4511	0/1:239:108,131:108:3876:131:4665:-303.261,0,-274.654	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.321	0/1:15:11,4:11:396:4:144:-7.49534,0,-31.2621	0/0:199:198,1:198:7073:1:36:0,-56.7173,-631.617	0/1:55:20,35:20:716:35:1244:-82.7563,0,-47.968	0/1:14:12,2:12:432:2:72:-2.29042,0,-34.9512	0/1:36:22,14:22:792:14:500:-30.8655,0,-60.6671	0/1:76:26,50:26:936:50:1800:-120.749,0,-61.5577	0/1:112:57,55:57:2048:55:1969:-122.215,0,-150.257	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.464	0/1:217:123,94:123:4389:94:3350:-220.926,0,-327.057	0/0:288:286,2:286:10255:2:72:0,-80.416,-913.715	0/0:111:111,0:111:3920:0:0:0,-33.4143,-352.125	0/0:142:142,0:142:5069:0:0:0,-42.7463,-454.56	0/1:207:105,102:105:3768:102:3651:-225.432,0,-276.096	0/0:115:115,0:115:4108:0:0:0,-34.6184,-369.247	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.548	0/0:129:128,1:128:4581:1:36:0,-35.5867,-407.112	0/0:87:87,0:87:3116:0:0:0,-26.1896,-279.658	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.366	0/1:92:49,43:49:1756:43:1531:-95.1854,0,-130.374	0/0:100:100,0:100:3523:0:0:0,-30.103,-316.683	0/0:112:112,0:112:3982:0:0:0,-33.7154,-356.833	0/0:247:247,0:247:8834:0:0:0,-74.3544,-792.86	0/0:175:175,0:175:6245:0:0:0,-52.6802,-560.795	0/0:135:131,4:131:4689:4:144:0,-28.6283,-409.222	0/1:13:9,4:9:324:4:144:-8.0974,0,-25.5506	0/1:189:81,108:81:2904:108:3876:-249.551,0,-204.184	0/0:191:191,0:191:6848:0:0:0,-57.4967,-614.746	0/1:262:150,112:150:5340:112:3979:-237.574,0,-400.559	0/0:101:100,1:100:3588:1:36:0,-27.9371,-318.973	0/0:76:75,1:75:2687:1:36:0,-19.6907,-237.208	0/1:99:61,38:61:2188:38:1364:-78.1155,0,-166.479	0/1:97:55,42:55:1976:42:1512:-90.2561,0,-148.466	0/0:36:36,0:36:1292:0:0:0,-10.8371,-115.892	0/1:68:33,35:33:1184:35:1247:-81.357,0,-86.1091	0/1:62:31,31:31:1112:31:1103:-69.7883,0,-81.4342	0/1:104:58,46:58:2072:46:1639:-99.9357,0,-154.597	0/1:132:69,63:69:2472:63:2264:-140.455,0,-181.722	0/1:97:29,68:29:1044:68:2439:-162.601,0,-64.9234	0/0:126:126,0:126:4517:0:0:0,-37.9298,-404.12	0/0:119:119,0:119:4276:0:0:0,-35.8226,-383.588
chr10	1425601	.	A	G	192132	PASS	AB=0.512331;ABP=11.5254;AC=138;AF=0.734043;AN=188;AO=9234;CIGAR=1X;DP=12397;DPB=12397;DPRA=0;EPP=20054.4;EPPR=6849.67;GTI=1;LEN=1;MEANALT=1.06383;MQM=53.3877;MQMR=34.4384;NS=94;NUMALT=1;ODDS=4.60397;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329762;QR=113087;RO=3157;RPL=9234;RPP=20054.4;RPPR=6849.67;RPR=0;RUN=1;SAF=9234;SAP=20054.4;SAR=0;SRF=3157;SRP=6858.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:25,38:25:888:38:1364:-102.907,0,-53.9446	1/1:659:1,658:1:36:658:23550:-2110.99,-195.133,0	0/1:157:76,81:76:2728:81:2875:-211.197,0,-173.186	0/1:269:144,125:144:5164:125:4463:-318.823,0,-327.5	0/1:55:22,33:22:776:33:1184:-89.9469,0,-46.1463	0/1:47:17,30:17:612:30:1072:-82.1821,0,-34.9662	0/1:95:46,49:46:1656:49:1756:-129.318,0,-99.1575	0/1:210:108,102:108:3884:102:3648:-264.079,0,-244.364	0/1:108:62,46:62:2224:46:1645:-115.564,0,-147.144	0/1:122:57,65:57:2036:65:2313:-171.363,0,-124.585	0/1:79:34,45:34:1211:45:1616:-121.011,0,-72.3115	0/1:70:34,36:34:1224:36:1275:-93.6736,0,-77.4492	1/1:50:0,50:0:0:50:1778:-159.908,-15.0515,0	1/1:121:0,121:0:0:121:4278:-383.53,-36.4246,0	1/1:76:0,75:0:0:75:2688:-241.163,-22.5773,0	1/1:101:0,101:0:0:101:3606:-323.821,-30.404,0	0/1:77:32,45:32:1148:45:1607:-121.064,0,-69.9993	1/1:81:1,80:1:36:80:2849:-251.655,-20.7852,0	0/1:65:27,38:27:972:38:1336:-100.399,0,-59.6393	0/1:334:174,160:174:6224:160:5732:-413.436,0,-392.759	0/1:210:104,106:104:3720:106:3788:-277.187,0,-233.818	0/1:136:89,46:89:3196:46:1623:-104.915,0,-232.14	0/1:107:68,39:68:2423:39:1400:-93.7591,0,-159.165	0/1:147:86,61:86:3080:61:2162:-149.874,0,-201.099	0/1:89:46,43:46:1656:43:1535:-111.459,0,-104.156	1/1:425:0,425:0:0:425:15182:-1362.11,-127.938,0	1/1:256:1,255:1:36:255:9125:-815.812,-73.8761,0	0/1:41:19,22:19:684:22:792:-59.1619,0,-41.4044	0/1:335:158,177:158:5680:177:6344:-469.22,0,-383.194	0/1:612:257,355:257:9224:355:12681:-953.922,0,-545.189	1/1:227:0,227:0:0:227:8115:-726.058,-68.3338,0	1/1:8:0,8:0:0:8:288:-26.0347,-2.40824,0	0/1:12:5,7:5:180:7:252:-19.3839,0,-11.0507	1/1:6:0,6:0:0:6:216:-19.7624,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.6979,-3.0103,0	1/1:8:0,8:0:0:8:288:-26.2302,-2.40824,0	1/1:198:0,198:0:0:198:7037:-631.277,-59.6039,0	0/1:216:105,111:105:3760:111:3969:-291.52,0,-233.842	1/1:98:0,98:0:0:98:3488:-312.685,-29.5009,0	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	0/1:141:69,72:69:2484:72:2560:-187.583,0,-152.718	0/1:43:16,27:16:572:27:972:-74.5723,0,-31.783	0/1:127:48,79:48:1716:79:2832:-215.668,0,-98.1639	0/1:80:38,42:38:1364:42:1508:-111.556,0,-81.3975	1/1:72:0,71:0:0:71:2513:-225.244,-21.3731,0	1/1:85:0,85:0:0:85:3048:-273.815,-25.5876,0	1/1:231:0,231:0:0:231:8272:-742.149,-69.5379,0	0/1:192:92,100:92:3296:100:3584:-264.142,0,-201.583	1/1:121:0,121:0:0:121:4340:-389.518,-36.4246,0	1/1:204:0,204:0:0:204:7280:-652.261,-61.4101,0	1/1:240:0,240:0:0:240:8555:-768.023,-72.2472,0	0/1:11:5,6:5:180:6:216:-16.4511,0,-11.3517	0/1:237:130,107:130:4656:107:3813:-269.606,0,-302.446	1/1:54:0,54:0:0:54:1940:-174.292,-16.2556,0	0/1:15:4,11:4:144:11:396:-31.2621,0,-7.49534	1/1:208:2,205:2:72:205:7330:-651.479,-56.2486,0	0/1:55:33,22:33:1175:22:785:-52.9926,0,-77.9555	0/1:14:2,12:2:72:12:432:-34.9512,0,-2.29042	0/1:36:14,22:14:496:22:792:-60.6671,0,-30.8241	0/1:79:52,27:52:1860:27:944:-61.3074,0,-124.632	0/1:117:56,61:56:2003:61:2172:-159.946,0,-123.263	1/1:9:0,9:0:0:9:324:-29.464,-2.70927,0	0/1:215:94,121:94:3368:121:4324:-323.263,0,-222.88	1/1:290:1,288:1:36:288:10333:-923.439,-84.1491,0	1/1:110:0,110:0:0:110:3932:-353.342,-33.1133,0	1/1:143:1,142:1:32:142:5072:-451.976,-40.0596,0	0/1:206:101,105:101:3624:105:3726:-272.856,0,-223.309	1/1:118:0,118:0:0:118:4236:-380.732,-35.5215,0	1/1:47:0,47:0:0:47:1670:-150.201,-14.1484,0	1/1:126:1,124:1:36:124:4431:-393.729,-34.7246,0	1/1:87:0,87:0:0:87:3119:-280.031,-26.1896,0	1/1:43:0,43:0:0:43:1532:-137.826,-12.9443,0	0/1:93:45,48:45:1608:48:1711:-126.032,0,-100.578	1/1:101:0,101:0:0:101:3590:-322.672,-30.404,0	1/1:114:0,114:0:0:114:4079:-366.558,-34.3174,0	1/1:250:0,250:0:0:250:8895:-798.363,-75.2575,0	1/1:173:0,173:0:0:173:6187:-555.607,-52.0782,0	1/1:142:4,138:4:144:138:4930:-430.965,-30.7355,0	0/1:13:4,9:4:144:9:324:-25.5506,0,-8.0974	0/1:189:109,80:109:3912:80:2872:-201.307,0,-252.42	1/1:198:0,198:0:0:198:7073:-635.015,-59.6039,0	0/1:265:111,154:111:3964:154:5499:-413.773,0,-234.506	1/1:102:0,102:0:0:102:3655:-326.291,-30.7051,0	1/1:75:1,74:1:36:74:2627:-231.822,-19.3896,0	0/1:98:38,60:38:1368:60:2119:-160.819,0,-78.5971	0/1:99:44,55:44:1572:55:1953:-145.823,0,-95.2211	1/1:35:0,35:0:0:35:1256:-112.881,-10.5361,0	0/1:68:35,33:35:1238:33:1184:-86.1197,0,-80.8943	0/1:61:29,32:29:1027:32:1133:-83.6204,0,-64.2072	0/1:104:45,59:45:1599:59:2097:-156.878,0,-96.8864	0/1:131:62,69:62:2228:69:2441:-179.262,0,-138.076	0/1:102:72,30:72:2567:30:1067:-65.4868,0,-171.857	1/1:127:0,127:0:0:127:4543:-406.644,-38.2308,0	1/1:118:1,117:1:36:117:4156:-369.074,-31.9233,0
chr10	1425801	.	C	T	60159.7	PASS	AB=0.525116;ABP=30.1706;AC=50;AF=0.265957;AN=188;AO=2612;CIGAR=1X;DP=9085;DPB=9085;DPRA=1.14742;EPP=5648.87;EPPR=13928.9;GTI=0;LEN=1;MEANALT=1.07273;MQM=59.7569;MQMR=59.9785;NS=94;NUMALT=1;ODDS=0.152531;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93217;QR=229062;RO=6465;RPL=1369;RPP=16.2087;RPPR=5.10653;RPR=1243;RUN=1;SAF=1366;SAP=14.9817;SAR=1246;SRF=3180;SRP=6.71339;SRR=3285;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:18,31:18:640:31:1104:-84.9185,0,-43.1788	0/0:117:117,0:117:4189:0:0:0,-35.2205,-377.19	0/1:146:72,74:72:2514:74:2653:-195.005,0,-182.558	0/1:172:83,89:83:2935:89:3178:-234.46,0,-212.606	0/1:70:34,36:34:1182:36:1287:-95.0599,0,-85.6084	0/1:50:19,31:19:684:31:1107:-84.5697,0,-46.8388	0/1:114:54,60:54:1899:60:2160:-158.985,0,-136.867	0/1:203:94,109:94:3339:109:3904:-290.275,0,-239.617	0/1:114:60,54:60:2148:54:1907:-137.542,0,-159.27	0/1:86:51,34:51:1824:34:1224:-84.5197,0,-138.494	0/1:77:40,37:40:1408:37:1332:-97.0031,0,-103.835	0/1:200:100,100:100:3508:100:3565:-259.313,0,-255.725	0/0:136:136,0:136:4823:0:0:0,-40.9401,-434.227	0/0:117:117,0:117:4155:0:0:0,-35.2205,-374.135	0/0:118:118,0:118:4205:0:0:0,-35.5215,-378.631	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.957	0/1:106:48,58:48:1658:58:2080:-155.559,0,-117.594	0/0:103:103,0:103:3630:0:0:0,-31.0061,-326.904	0/1:81:43,38:43:1522:38:1360:-98.3025,0,-112.888	0/1:126:60,66:60:2148:66:2368:-175.448,0,-155.658	0/1:171:88,83:88:3107:83:2905:-210.136,0,-228.381	0/1:50:13,37:13:459:37:1325:-104.5,0,-26.5926	0/1:103:48,55:48:1686:55:1944:-144.228,0,-121.016	0/1:81:22,59:22:788:59:2108:-164.971,0,-46.8614	0/1:90:45,45:45:1564:45:1598:-116.699,0,-113.952	0/0:203:202,0:202:7166:0:0:0,-60.8081,-644.731	0/0:203:203,0:203:7206:0:0:0,-61.1091,-648.599	0/1:39:17,22:17:603:22:792:-59.8479,0,-42.8593	0/1:171:92,79:92:3282:79:2836:-203.684,0,-244.121	0/1:70:28,42:28:999:42:1506:-114.75,0,-69.1524	0/0:81:81,0:81:2864:0:0:0,-24.3834,-257.997	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8032	0/1:12:7,5:7:237:5:171:-12.1131,0,-18.0467	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/0:254:254,0:254:9022:0:0:0,-76.4616,-811.96	0/1:66:34,32:34:1211:32:1139:-82.9504,0,-89.4275	0/0:85:85,0:85:3025:0:0:0,-25.5875,-272.48	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:106:53,53:53:1870:53:1889:-138.377,0,-136.669	0/1:59:21,38:21:741:38:1368:-105.66,0,-49.2508	0/1:150:68,82:68:2412:82:2939:-219.579,0,-172.18	0/1:101:48,53:48:1701:53:1900:-140.874,0,-122.97	0/0:140:140,0:140:4842:0:0:0,-42.1442,-435.94	0/0:74:74,0:74:2611:0:0:0,-22.2762,-235.214	0/0:76:76,0:76:2711:0:0:0,-22.8783,-244.234	0/1:149:71,78:71:2507:78:2791:-206.259,0,-181.027	0/0:66:66,0:66:2337:0:0:0,-19.868,-210.588	0/0:93:93,0:93:3297:0:0:0,-27.9958,-296.947	0/0:50:49,0:49:1744:0:0:0,-14.7505,-156.885	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:95:49,46:49:1751:46:1652:-120.36,0,-129.276	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:123:119,3:119:4198:3:108:0,-26.8979,-367.855	0/1:54:21,31:21:743:31:1093:-82.6642,0,-51.1805	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:105:48,57:48:1696:57:2027:-151.093,0,-121.315	0/1:158:79,79:79:2828:79:2821:-206.518,0,-207.196	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:40:16,24:16:557:24:850:-64.7668,0,-38.4144	0/0:145:143,2:143:5114:2:72:0,-36.8126,-453.565	0/0:59:58,0:58:2071:0:0:0,-17.4597,-186.3	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.624	0/1:122:62,60:62:2193:60:2148:-156.861,0,-160.909	0/0:86:85,1:85:3027:1:36:0,-22.2903,-269.063	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/0:69:69,0:69:2406:0:0:0,-20.7711,-216.793	0/0:173:173,0:173:6140:0:0:0,-52.0782,-552.695	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:72:45,27:45:1590:27:964:-65.4027,0,-121.715	0/0:60:60,0:60:2136:0:0:0,-18.0618,-191.571	0/0:193:192,1:192:6820:1:36:0,-54.5005,-610.274	0/0:104:104,0:104:3701:0:0:0,-31.3071,-333.292	0/0:130:130,0:130:4593:0:0:0,-39.1339,-413.537	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/1:8:2,6:2:72:6:216:-17.3807,0,-4.42848	0/1:95:48,47:48:1711:47:1679:-122.799,0,-125.677	0/0:111:109,2:109:3829:2:72:0,-26.5776,-337.972	0/1:179:73,106:73:2594:106:3752:-282.975,0,-179.824	0/0:138:138,0:138:4921:0:0:0,-41.5421,-442.185	0/0:141:141,0:141:5008:0:0:0,-42.4452,-450.869	0/1:175:84,91:84:2947:91:3248:-239.842,0,-212.782	0/1:233:109,123:109:3866:123:4392:-325.255,0,-277.936	0/0:66:66,0:66:2321:0:0:0,-19.868,-209.147	0/1:133:79,54:79:2782:54:1929:-133.848,0,-210.583	0/1:116:54,62:54:1888:62:2220:-163.955,0,-135.274	0/1:82:38,44:38:1356:44:1552:-115.285,0,-97.656	0/1:119:47,72:47:1628:72:2580:-196.626,0,-110.98	0/1:132:49,83:49:1723:83:2934:-224.552,0,-115.616	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:161:161,0:161:5707:0:0:0,-48.4658,-513.749
chr10	1432950	.	C	T	38865.2	PASS	AB=0.467947;ABP=47.1375;AC=51;AF=0.271277;AN=188;AO=2326;CIGAR=1X;DP=9781;DPB=9781;DPRA=0.890753;EPP=5053.86;EPPR=16156.6;GTI=3;LEN=1;MEANALT=1.05;MQM=35.2476;MQMR=51.0925;NS=94;NUMALT=1;ODDS=1.93348;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82785;QR=264143;RO=7451;RPL=1219;RPP=14.7209;RPPR=60.7215;RPR=1107;RUN=1;SAF=1219;SAP=14.7209;SAR=1107;SRF=3951;SRP=62.2882;SRR=3500;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:22,18:22:775:18:635:-36.8829,0,-55.4246	0/0:119:117,2:117:4162:2:68:0,-30.357,-364.336	0/1:150:80,70:80:2828:70:2484:-138.93,0,-200.962	0/1:170:107,63:107:3801:63:2251:-109.019,0,-288.99	0/1:76:41,35:41:1463:35:1243:-74.0587,0,-107.793	0/1:54:26,28:26:898:28:992:-58.6565,0,-63.8144	0/1:104:57,47:57:2027:47:1688:-102.213,0,-150.719	0/1:190:101,89:101:3593:89:3137:-183.547,0,-253.982	0/1:74:37,37:37:1316:37:1328:-73.5445,0,-92.3262	0/1:92:45,47:45:1603:47:1672:-104.162,0,-116.278	0/1:80:42,38:42:1463:38:1352:-67.5619,0,-106.044	0/1:155:81,74:81:2839:74:2628:-150.21,0,-202.291	0/0:159:159,0:159:5592:0:0:0,-47.8638,-491.615	0/0:133:133,0:133:4699:0:0:0,-40.037,-411.612	0/0:124:124,0:124:4413:0:0:0,-37.3277,-394.121	0/0:115:115,0:115:4055:0:0:0,-34.6184,-358.475	0/1:108:54,54:54:1890:54:1928:-114.012,0,-135.184	0/0:100:100,0:100:3522:0:0:0,-30.103,-311.965	0/1:86:48,38:48:1699:38:1360:-71.0339,0,-123.121	0/1:129:64,65:64:2278:65:2314:-142.032,0,-165.024	0/1:126:67,58:67:2386:58:2080:-109.448,0,-174.382	0/1:43:14,29:14:492:29:1032:-65.6075,0,-31.5371	0/1:88:47,41:47:1672:41:1448:-72.7991,0,-120.689	0/1:96:59,36:59:2100:36:1292:-80.9276,0,-159.551	0/1:61:27,34:27:955:34:1224:-68.288,0,-65.9792	0/0:230:229,1:229:8126:1:36:0,-66.77,-724.622	0/0:275:275,0:275:9797:0:0:0,-82.7832,-866.049	0/1:56:23,33:23:824:33:1179:-70.2038,0,-56.4337	0/1:171:105,66:105:3729:66:2364:-121.912,0,-280.625	0/1:70:39,31:39:1387:31:1112:-74.4614,0,-102.335	0/0:78:78,0:78:2763:0:0:0,-23.4803,-247.127	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.2677	0/1:11:6,5:6:216:5:180:-9.04835,0,-16.125	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.8132	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.2916	0/0:310:310,0:310:10893:0:0:0,-93.3193,-974.03	0/1:64:29,35:29:1027:35:1222:-72.2071,0,-71.9769	0/0:95:95,0:95:3365:0:0:0,-28.5978,-297.725	0/1:3:2,1:2:72:1:36:-1.47044,0,-5.93363	0/1:113:55,58:55:1972:58:2043:-128.2,0,-141.237	0/1:58:26,32:26:918:32:1129:-67.5853,0,-64.3933	0/1:187:121,66:121:4290:66:2364:-118.358,0,-325.814	0/1:108:59,49:59:2085:49:1717:-104.53,0,-153.228	0/0:110:110,0:110:3845:0:0:0,-33.1133,-342.522	0/0:98:98,0:98:3499:0:0:0,-29.5009,-313.901	0/0:104:103,1:103:3656:1:36:0,-28.7484,-314.712	0/1:170:93,77:93:3315:77:2751:-156.345,0,-244.72	0/0:97:97,0:97:3484:0:0:0,-29.1999,-311.285	0/0:182:179,3:179:6341:3:108:0,-48.3259,-560.458	0/0:76:76,0:76:2719:0:0:0,-22.8783,-243.541	0/1:3:1,2:1:36:2:72:-4.79979,0,-2.69518	0/1:146:86,60:86:3042:60:2123:-121.484,0,-223.533	0/0:62:62,0:62:2207:0:0:0,-18.6639,-197.812	0/1:2:1,1:1:36:1:36:-2.98442,0,-2.99621	0/0:163:163,0:163:5835:0:0:0,-49.0679,-512.784	0/1:49:23,26:23:820:26:924:-52.4755,0,-58.2481	0/1:8:7,1:7:248:1:36:-1.04625,0,-20.1559	0/1:4:2,2:2:72:2:72:-4.42121,0,-5.609	0/1:82:32,50:32:1143:50:1770:-100.992,0,-74.3319	0/1:163:83,80:83:2947:80:2857:-150.416,0,-209.697	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6451	0/1:112:57,54:57:2013:54:1917:-91.4003,0,-145.705	0/0:189:189,0:189:6690:0:0:0,-56.8947,-596.823	0/0:75:75,0:75:2631:0:0:0,-22.5772,-234.423	0/0:83:82,1:82:2926:1:36:0,-21.4494,-254.623	0/1:127:75,52:75:2675:52:1846:-103.931,0,-200.426	0/0:134:133,1:133:4746:1:36:0,-37.8711,-421.474	0/0:72:72,0:72:2562:0:0:0,-21.6742,-226.68	0/0:52:51,1:51:1815:1:36:0,-13.0949,-158.172	0/0:130:130,0:130:4615:0:0:0,-39.1339,-411.787	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.1416	0/1:57:29,28:29:1012:28:996:-59.2248,0,-71.5721	0/0:71:70,1:70:2499:1:36:0,-17.8246,-213.713	0/0:168:168,0:168:5955:0:0:0,-50.573,-522.02	0/0:133:133,0:133:4733:0:0:0,-40.037,-423.098	0/0:160:160,0:160:5690:0:0:0,-48.1648,-496.888	0/0:166:166,0:166:5925:0:0:0,-49.971,-519.455	0/1:4:2,2:2:72:2:72:-4.62141,0,-5.4092	0/1:101:58,43:58:2080:43:1532:-87.9331,0,-154.066	0/0:129:129,0:129:4610:0:0:0,-38.8329,-404.422	0/1:191:116,75:116:4151:75:2663:-138.445,0,-312.87	0/0:133:132,0:132:4662:0:0:0,-39.736,-416.759	0/0:139:139,0:139:4879:0:0:0,-41.8432,-434.73	0/1:166:81,85:81:2822:85:3044:-190.558,0,-202.497	0/1:228:109,119:109:3848:119:4276:-250.179,0,-273.693	0/0:58:57,1:57:2007:1:36:0,-13.8863,-174.818	0/1:130:71,59:71:2497:59:2088:-116.251,0,-180.598	0/1:112:65,47:65:2280:47:1675:-90.8667,0,-167.192	0/1:68:38,30:38:1347:30:1072:-59.9188,0,-96.9178	0/1:116:56,60:56:1983:60:2129:-115.896,0,-140.676	0/1:143:59,84:59:2088:84:2972:-174.197,0,-142.525	0/0:73:73,0:73:2578:0:0:0,-21.9752,-224.358	0/0:186:186,0:186:6559:0:0:0,-55.9916,-585.133
chr10	1432960	.	C	T	190569	PASS	AB=0.52157;ABP=22.7764;AC=137;AF=0.728723;AN=188;AO=7274;CIGAR=1X;DP=9627;DPB=9627;DPRA=0;EPP=15798.3;EPPR=5108.14;GTI=3;LEN=1;MEANALT=1.02128;MQM=50.8031;MQMR=35.5619;NS=94;NUMALT=1;ODDS=0.266731;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257874;QR=83563;RO=2351;RPL=3973;RPP=137.82;RPPR=8.20576;RPR=3301;RUN=1;SAF=3973;SAP=137.82;SAR=3301;SRF=1213;SRP=8.20576;SRR=1138;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:18,21:18:644:21:720:-50.9634,0,-38.2926	1/1:107:2,105:2:68:105:3712:-322.783,-26.4253,0	0/1:151:75,76:75:2657:76:2724:-191.082,0,-155.727	0/1:165:64,101:64:2279:101:3560:-268.242,0,-113.257	0/1:76:34,42:34:1215:42:1484:-109.511,0,-71.5279	0/1:49:27,22:27:959:22:780:-54.3661,0,-57.7953	0/1:106:49,57:49:1747:57:2032:-150.566,0,-107.203	0/1:193:93,100:93:3294:100:3538:-249.058,0,-195.86	0/1:73:37,36:37:1316:36:1273:-88.6592,0,-74.0482	0/1:89:47,42:47:1688:42:1500:-107.895,0,-105.409	0/1:78:35,43:35:1247:43:1512:-110.942,0,-61.714	0/1:151:75,76:75:2684:76:2687:-189.657,0,-158.771	1/1:160:0,160:0:0:160:5679:-498.221,-48.1648,0	1/1:133:1,132:1:36:132:4688:-407.453,-36.4387,0	1/1:120:0,120:0:0:120:4281:-382.459,-36.1236,0	1/1:114:0,114:0:0:114:4020:-355.243,-34.3174,0	0/1:105:56,49:56:1992:49:1717:-119.843,0,-121.938	1/1:91:0,91:0:0:91:3199:-283.999,-27.3937,0	0/1:85:38,47:38:1347:47:1628:-114.934,0,-72.1554	0/1:133:67,65:67:2400:65:2312:-165.284,0,-148.67	0/1:126:58,68:58:2048:68:2386:-173.477,0,-108.789	0/1:43:29,14:29:1040:14:500:-32.2341,0,-65.9364	0/1:86:43,43:43:1518:43:1517:-109.78,0,-79.8593	0/1:92:39,53:39:1383:53:1880:-140.934,0,-89.1285	0/1:60:33,27:33:1175:27:949:-65.6278,0,-67.1604	1/1:227:1,226:1:32:226:8022:-714.341,-65.9126,0	1/1:276:0,276:0:0:276:9834:-869.021,-83.0843,0	0/1:55:33,22:33:1164:22:792:-53.8568,0,-70.0429	0/1:166:62,104:62:2197:104:3670:-276.336,0,-112.042	0/1:74:35,39:35:1224:39:1387:-100.981,0,-84.3173	1/1:73:0,73:0:0:73:2582:-230.852,-21.9752,0	1/1:5:0,5:0:0:5:180:-16.2677,-1.50515,0	0/1:12:5,7:5:180:7:252:-18.9927,0,-8.74732	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:7:0,7:0:0:7:252:-20.6775,-2.10721,0	1/1:9:0,9:0:0:9:301:-27.1995,-2.70927,0	1/1:301:1,300:1:36:300:10611:-944.756,-87.0118,0	0/1:66:36,30:36:1277:30:1049:-73.2408,0,-77.5024	1/1:92:0,92:0:0:92:3258:-287.66,-27.6948,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-1.77147	0/1:110:57,53:57:2024:53:1861:-132.129,0,-129.533	0/1:57:31,26:31:1116:26:928:-65.5466,0,-66.8166	0/1:181:66,115:66:2360:115:4069:-307.72,0,-122.984	0/1:109:50,59:50:1771:59:2104:-154.681,0,-107.923	1/1:106:0,106:0:0:106:3780:-336.862,-31.9092,0	1/1:89:0,89:0:0:89:3157:-283.329,-26.7917,0	1/1:103:1,102:1:36:102:3618:-311.416,-28.4474,0	0/1:168:75,93:75:2668:93:3283:-241.141,0,-153.229	1/1:95:0,95:0:0:95:3367:-300.673,-28.5979,0	1/1:177:3,174:3:108:174:6186:-546.374,-46.8207,0	1/1:74:0,74:0:0:74:2637:-236.143,-22.2762,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-4.79979	0/1:142:64,78:64:2296:78:2738:-197.751,0,-137.576	1/1:63:0,63:0:0:63:2238:-200.422,-18.9649,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.98442	1/1:161:0,161:0:0:161:5758:-505.427,-48.4658,0	0/1:49:26,23:26:914:23:809:-57.7044,0,-53.2012	0/1:8:1,7:1:36:7:252:-20.5072,0,-1.04625	0/1:4:2,2:2:72:2:72:-5.609,0,-4.42121	0/1:85:51,34:51:1824:34:1198:-79.9873,0,-105.567	0/1:165:84,81:84:2995:81:2870:-203.686,0,-162.102	1/1:6:0,6:0:0:6:216:-19.6451,-1.80618,0	0/1:112:53,59:53:1865:59:2108:-153.739,0,-88.5083	1/1:184:1,183:1:36:183:6461:-574.441,-52.9226,0	1/1:75:0,75:0:0:75:2643:-235.435,-22.5773,0	1/1:80:0,79:0:0:79:2817:-247.971,-23.7814,0	0/1:114:50,64:50:1773:64:2260:-168.012,0,-102.655	1/1:133:1,132:1:36:132:4709:-418.023,-37.5701,0	1/1:73:0,73:0:0:73:2608:-230.742,-21.9752,0	1/1:47:1,46:1:36:46:1627:-141.48,-11.5897,0	1/1:130:0,130:0:0:130:4618:-413.103,-39.1339,0	1/1:14:0,14:0:0:14:496:-44.7584,-4.21442,0	0/1:56:27,29:27:963:29:1040:-74.2054,0,-57.1633	1/1:69:0,69:0:0:69:2453:-212.648,-20.7711,0	1/1:169:0,169:0:0:169:6024:-528.024,-50.8741,0	1/1:126:0,126:0:0:126:4367:-389.974,-37.9298,0	1/1:160:0,160:0:0:160:5695:-496.382,-48.1648,0	1/1:163:0,163:0:0:163:5801:-509.194,-49.0679,0	0/1:4:2,2:2:72:2:72:-5.4092,0,-4.62141	0/1:99:42,57:42:1480:57:2009:-148.281,0,-85.6104	1/1:126:0,126:0:0:126:4512:-395.377,-37.9298,0	0/1:188:77,111:77:2721:111:3915:-293.05,0,-146.786	1/1:133:0,133:0:0:133:4707:-421.051,-40.037,0	1/1:138:0,138:0:0:138:4916:-437.851,-41.5421,0	0/1:169:86,83:86:3060:83:2937:-211.429,0,-193.037	0/1:227:119,108:119:4206:108:3828:-272.156,0,-247.246	1/1:56:0,56:0:0:56:1999:-177.455,-16.8577,0	0/1:131:59,72:59:2099:72:2564:-184.938,0,-117.333	0/1:111:49,62:49:1756:62:2173:-159.36,0,-96.7521	0/1:70:33,37:33:1180:37:1291:-92.1599,0,-67.2683	0/1:116:60,56:60:2126:56:1986:-141.224,0,-116.911	0/1:136:83,53:83:2943:53:1861:-123.873,0,-176.361	1/1:72:0,72:0:0:72:2579:-224.284,-21.6742,0	1/1:186:0,186:0:0:186:6617:-591.188,-55.9916,0
chr10	1450904	.	T	C	158986	PASS	AB=0.451732;ABP=106.984;AC=134;AF=0.728261;AN=184;AO=6094;CIGAR=1X;DP=8923;DPB=8923;DPRA=49.0165;EPP=13097.4;EPPR=6102.75;GTI=5;LEN=1;MEANALT=1;MQM=59.9964;MQMR=59.9526;NS=92;NUMALT=1;ODDS=0.576898;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=216663;QR=101206;RO=2829;RPL=3811;RPP=834.963;RPPR=106.394;RPR=2283;RUN=1;SAF=3797;SAP=804.752;SAR=2297;SRF=1595;SRP=103.042;SRR=1234;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:16,13:16:576:13:451:-32.1899,0,-43.4451	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	0/1:105:78,27:78:2776:27:949:-54.1146,0,-218.471	0/1:380:180,200:180:6422:200:7102:-524.854,0,-463.675	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:160:64,96:64:2277:96:3436:-261.289,0,-157.026	0/1:51:32,19:32:1137:19:676:-45.8155,0,-87.2844	0/1:64:35,29:35:1236:29:1036:-74.288,0,-92.2756	0/1:264:151,113:151:5416:113:4017:-282.249,0,-408.04	0/1:99:33,66:33:1184:66:2356:-182.497,0,-77.0663	0/1:108:58,50:58:2061:50:1752:-125.449,0,-153.248	1/1:60:0,60:0:0:60:2122:-191.247,-18.0618,0	1/1:69:0,69:0:0:69:2450:-220.753,-20.7711,0	1/1:170:0,170:0:0:170:6039:-543.617,-51.1751,0	1/1:53:0,53:0:0:53:1875:-169.028,-15.9546,0	0/1:35:10,25:10:356:25:873:-68.3485,0,-21.8452	1/1:32:0,32:0:0:32:1136:-102.548,-9.63296,0	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:247:128,119:128:4596:119:4240:-307.425,0,-339.449	0/1:121:78,43:78:2792:43:1531:-101.658,0,-215.096	0/1:37:29,8:29:1044:8:276:-14.0371,0,-83.1367	0/1:123:70,53:70:2511:53:1877:-132.18,0,-189.215	0/1:33:24,9:24:856:9:324:-19.5719,0,-67.4271	0/1:41:19,22:19:684:22:788:-58.9026,0,-49.5481	1/1:116:3,113:3:108:113:3992:-349.394,-24.8443,0	1/1:120:0,120:0:0:120:4278:-385.198,-36.1236,0	0/1:38:18,20:18:624:20:703:-52.1544,0,-45.0423	0/1:345:256,89:256:9155:89:3147:-179.6,0,-720.065	0/1:65:29,36:29:1036:36:1290:-96.8368,0,-73.987	1/1:180:1,179:1:36:179:6387:-571.323,-50.5871,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:6,3:6:216:3:99:-6.52731,0,-17.0812	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:182:0,182:0:0:182:6406:-576.634,-54.7875,0	0/1:37:20,17:20:716:17:608:-43.9139,0,-53.6296	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	.:.:.:.:.:.:.:.	0/1:71:46,25:46:1656:25:896:-59.5872,0,-127.955	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	0/1:41:20,21:20:720:21:730:-53.6772,0,-52.7865	0/1:171:89,82:89:3188:82:2909:-210.57,0,-235.667	1/1:145:0,145:0:0:145:5143:-463.014,-43.6494,0	1/1:52:0,52:0:0:52:1849:-166.689,-15.6536,0	1/1:48:0,48:0:0:48:1701:-153.374,-14.4494,0	0/1:150:90,60:90:3220:60:2148:-148.433,0,-244.868	1/1:168:3,165:3:108:165:5884:-519.596,-40.4979,0	1/1:155:0,155:0:0:155:5538:-498.545,-46.6597,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/1:66:26,40:26:928:40:1425:-108.678,0,-63.9703	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	.:.:.:.:.:.:.:.	1/1:80:0,80:0:0:80:2804:-252.598,-24.0824,0	0/1:46:19,27:19:676:27:960:-72.8689,0,-47.3206	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	0/1:79:43,36:43:1520:36:1281:-91.8099,0,-113.308	0/1:182:100,82:100:3592:82:2936:-209.687,0,-268.698	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:210:166,44:166:5937:44:1567:-78.1046,0,-471.221	1/1:245:0,245:0:0:245:8735:-786.145,-73.7524,0	1/1:45:0,45:0:0:45:1578:-142.307,-13.5464,0	1/1:86:0,86:0:0:86:3064:-275.99,-25.8886,0	0/1:239:105,134:105:3772:134:4774:-357.872,0,-267.732	1/1:195:0,195:0:0:195:6958:-626.286,-58.7009,0	1/1:46:0,46:0:0:46:1630:-146.987,-13.8474,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:52:0,52:0:0:52:1855:-167.229,-15.6536,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:109:59,50:59:2111:50:1767:-126.5,0,-157.446	1/1:133:0,133:0:0:133:4711:-424.15,-40.037,0	1/1:119:0,119:0:0:119:4188:-377.103,-35.8226,0	1/1:280:0,280:0:0:280:10000:-899.941,-84.2884,0	1/1:22:1,21:1:36:21:733:-62.6908,-3.02439,0	1/1:103:1,102:1:36:102:3625:-322.857,-27.4078,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:58:33,25:33:1188:25:874:-61.5155,0,-89.7689	1/1:44:0,44:0:0:44:1546:-139.43,-13.2453,0	0/1:344:179,165:179:6419:165:5892:-426.838,0,-472.016	1/1:143:0,143:0:0:143:5104:-459.505,-43.0473,0	1/1:139:0,139:0:0:139:4973:-447.718,-41.8432,0	0/1:157:78,79:78:2780:79:2796:-204.618,0,-203.18	0/1:296:146,150:146:5248:150:5337:-391.361,0,-382.161	1/1:21:0,21:0:0:21:739:-66.8324,-6.32163,0	0/1:56:26,30:26:936:30:1069:-79.6633,0,-67.7018	0/1:56:28,28:28:1004:28:1004:-73.8182,0,-73.8182	0/1:41:20,21:20:698:21:737:-54.3084,0,-50.7992	0/1:96:38,58:38:1351:58:2057:-156.501,0,-92.9907	0/1:160:107,53:107:3827:53:1883:-121.583,0,-296.462	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:243:1,242:1:36:242:8641:-774.087,-69.552,0
chr10	1460169	.	C	G	25178.4	PASS	AB=0.427546;ABP=174.502;AC=51;AF=0.274194;AN=186;AO=1614;CIGAR=1X;DP=7121;DPB=7121;DPRA=1.05007;EPP=3507.77;EPPR=11957;GTI=3;LEN=1;MEANALT=1.01961;MQM=59.9678;MQMR=59.9864;NS=93;NUMALT=1;ODDS=4.24715;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57525;QR=196457;RO=5505;RPL=1614;RPP=3507.77;RPPR=11957;RPR=0;RUN=1;SAF=0;SAP=3507.77;SAR=1614;SRF=0;SRP=11957;SRR=5505;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:17,5:17:608:5:176:-9.56236,0,-48.4294	0/0:131:131,0:131:4700:0:0:0,-39.4349,-423.159	0/1:105:66,39:66:2361:39:1400:-94.6895,0,-181.138	0/1:141:105,36:105:3745:36:1288:-73.7784,0,-294.804	0/1:52:33,19:33:1188:19:680:-45.8756,0,-91.575	0/1:27:19,8:19:684:8:280:-17.4115,0,-53.7625	0/1:110:55,55:55:1949:55:1960:-143.562,0,-142.571	0/1:123:87,36:87:3104:36:1270:-77.5743,0,-242.561	0/1:94:63,31:63:2240:31:1097:-69.9633,0,-173.567	0/1:46:28,18:28:969:18:632:-43.3594,0,-73.6694	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	0/1:82:48,34:48:1690:34:1224:-85.781,0,-127.698	0/0:76:76,0:76:2697:0:0:0,-22.8783,-242.974	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:57:29,28:29:1040:28:1002:-73.3358,0,-76.7557	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:46:25,21:25:900:21:756:-54.5198,0,-67.4736	0/1:194:110,84:110:3933:84:2971:-209.222,0,-295.761	0/1:92:54,38:54:1921:38:1348:-93.9255,0,-145.47	0/1:29:9,20:9:316:20:712:-55.6768,0,-20.049	0/1:55:44,11:44:1561:11:388:-18.6998,0,-124.223	0/1:101:50,51:50:1788:51:1824:-134.037,0,-130.799	0/1:51:34,17:34:1224:17:612:-40.0609,0,-95.1039	0/0:209:209,0:209:7447:0:0:0,-62.9153,-670.274	0/0:118:118,0:118:4209:0:0:0,-35.5215,-378.99	0/1:34:15,19:15:540:19:684:-51.6553,0,-38.7015	0/1:183:93,90:93:3325:90:3202:-233.315,0,-244.378	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	0/0:114:114,0:114:4065:0:0:0,-34.3174,-366.037	.:.:.:.:.:.:.:.	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:126:126,0:126:4470:0:0:0,-37.9298,-402.468	0/1:94:55,38:55:1953:38:1368:-95.0652,0,-147.688	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.573	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:275:153,122:153:5473:122:4363:-310.061,0,-409.913	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:93:52,41:52:1864:41:1451:-102.889,0,-140.044	0/1:57:29,28:29:1032:28:1008:-73.8776,0,-76.0348	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.864	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:110:110,0:110:3917:0:0:0,-33.1133,-352.723	0/1:106:53,53:53:1892:53:1900:-139.369,0,-138.649	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.007	0/0:111:111,0:111:3973:0:0:0,-33.4143,-357.759	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.451	1/1:1:0,1:0:0:1:29:-2.89966,-0.30103,0	0/1:192:111,81:111:3981:81:2908:-204.157,0,-300.68	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4891	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:77:76,0:76:2713:0:0:0,-22.8783,-244.052	0/1:35:18,17:18:629:17:608:-44.516,0,-46.3977	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:10:5,5:5:180:5:172:-12.8077,0,-13.5418	0/1:53:32,21:32:1148:21:752:-52.0517,0,-87.6752	0/1:82:40,42:40:1412:42:1500:-110.61,0,-102.69	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:98:68,30:68:2444:30:1063:-66.4805,0,-190.714	0/0:220:220,0:220:7858:0:0:0,-66.2266,-707.246	0/0:66:66,0:66:2339:0:0:0,-19.868,-210.77	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/1:118:48,70:48:1716:70:2459:-186.04,0,-119.204	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.722	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:62:62,0:62:2190:0:0:0,-18.6639,-197.363	0/0:72:71,1:71:2540:1:36:0,-18.0759,-225.253	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:34:25,9:25:896:9:324:-19.2708,0,-70.7253	0/0:44:44,0:44:1554:0:0:0,-13.2453,-140.148	0/0:156:156,0:156:5546:0:0:0,-46.9607,-499.265	0/0:154:153,1:153:5484:1:21:0,-44.2587,-491.586	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.41	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:108:69,39:69:2457:39:1392:-93.0678,0,-188.872	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/1:187:113,74:113:3999:74:2648:-182.274,0,-303.806	0/0:109:109,0:109:3887:0:0:0,-32.8123,-350.025	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:84:42,42:42:1508:42:1503:-110.277,0,-110.728	0/1:151:78,73:78:2783:73:2603:-189.061,0,-205.255	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:67:38,29:38:1341:29:1025:-72.3926,0,-100.819	0/1:57:25,32:25:896:32:1134:-85.2092,0,-63.8016	0/1:24:13,11:13:456:11:392:-28.3953,0,-34.1467	0/1:40:27,13:27:972:13:468:-30.4184,0,-75.7567	0/1:62:22,40:22:792:40:1420:-109.434,0,-52.9418	0/0:87:87,0:87:3094:0:0:0,-26.1896,-278.685	0/0:123:123,0:123:4386:0:0:0,-37.0267,-394.421
chr10	1483302	.	T	C	59179.9	PASS	AB=0.537679;ABP=80.5743;AC=51;AF=0.271277;AN=188;AO=3396;CIGAR=1X;DP=11163;DPB=11163;DPRA=1.17001;EPP=7247.62;EPPR=16564;GTI=1;LEN=1;MEANALT=1.06452;MQM=59.9856;MQMR=59.9987;NS=94;NUMALT=1;ODDS=1.71258;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=121134;QR=277128;RO=7762;RPL=3381;RPP=7247.62;RPPR=16581.2;RPR=15;RUN=1;SAF=0;SAP=7377.33;SAR=3396;SRF=2;SRP=16840.6;SRR=7760;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:25,33:25:892:33:1165:-87.6953,0,-63.1399	0/0:99:99,0:99:3544:0:0:0,-29.802,-319.169	0/1:189:102,87:102:3648:87:3097:-222.062,0,-271.63	0/1:249:108,141:108:3856:141:5015:-376.538,0,-272.28	0/1:93:49,44:49:1741:44:1531:-110.08,0,-128.977	0/1:45:16,29:16:576:29:1044:-80.7285,0,-38.6286	0/1:144:68,75:68:2440:75:2668:-197.105,0,-176.596	0/1:214:98,116:98:3508:116:4126:-307.103,0,-251.51	0/1:136:57,79:57:2017:79:2818:-212.919,0,-140.861	0/1:114:59,55:59:2097:55:1965:-142.807,0,-154.681	0/1:118:48,70:48:1724:70:2505:-190.181,0,-119.924	0/1:99:46,53:46:1652:53:1889:-140.484,0,-119.167	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.78	0/0:108:108,0:108:3867:0:0:0,-32.5112,-348.224	0/0:87:87,0:87:3089:0:0:0,-26.1896,-278.238	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:89:40,49:40:1436:49:1738:-129.88,0,-102.746	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/1:73:30,42:30:1076:42:1502:-113.586,0,-75.2639	0/1:193:80,113:80:2845:113:4037:-305.418,0,-198.189	0/1:170:82,88:82:2913:88:3145:-232.099,0,-211.23	0/1:73:11,62:11:396:62:2192:-175.568,0,-14.0076	0/1:114:61,53:61:2184:53:1904:-137.32,0,-162.509	0/1:133:53,80:53:1881:80:2864:-217.96,0,-129.53	0/1:106:64,42:64:2300:42:1493:-102.753,0,-175.352	0/0:353:353,0:353:12609:0:0:0,-106.264,-1134.64	0/0:246:246,0:246:8809:0:0:0,-74.0534,-792.795	0/1:34:20,14:20:720:14:504:-35.4631,0,-54.8938	0/1:333:148,184:148:5316:184:6559:-490.089,0,-378.27	0/1:130:71,59:71:2552:59:2098:-149.955,0,-190.796	0/0:156:154,2:154:5482:2:72:0,-40.124,-486.67	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:39:23,16:23:820:16:568:-39.7117,0,-62.3823	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:184:184,0:184:6592:0:0:0,-55.3895,-593.36	0/1:193:88,104:88:3156:104:3700:-275.042,0,-226.107	0/0:117:117,0:117:4154:0:0:0,-35.2205,-374.043	0/1:11:6,5:6:204:5:180:-13.2407,0,-15.382	0/1:201:86,115:86:3080:115:4117:-310.206,0,-216.921	0/1:69:31,38:31:1108:38:1364:-102.29,0,-79.2599	0/1:145:64,81:64:2280:81:2891:-216.777,0,-161.813	0/1:118:53,65:53:1904:65:2313:-172.908,0,-136.116	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:129:128,1:128:4554:1:36:0,-35.2346,-406.427	0/0:142:142,0:142:5081:0:0:0,-42.7463,-457.432	0/1:163:84,79:84:2978:79:2836:-206.41,0,-219.183	0/0:118:117,1:117:4158:1:36:0,-31.9233,-370.804	0/0:186:185,1:185:6579:1:27:0,-53.2918,-589.491	0/0:180:177,3:177:6309:3:108:0,-44.1102,-557.829	0/1:16:3,13:3:108:13:464:-37.281,0,-5.25869	0/1:259:105,154:105:3764:154:5496:-416.799,0,-260.992	0/0:70:70,0:70:2481:0:0:0,-21.0721,-223.543	0/1:32:15,17:15:536:17:612:-45.7805,0,-38.9419	0/0:173:172,1:172:6141:1:36:0,-48.4799,-549.191	0/1:48:22,26:22:777:26:932:-69.7494,0,-55.8009	0/1:18:11,7:11:384:7:252:-17.6104,0,-29.4761	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:133:64,69:64:2285:69:2476:-183.056,0,-165.873	0/1:149:72,77:72:2588:77:2755:-203.337,0,-188.315	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:204:101,103:101:3612:103:3654:-267.653,0,-263.876	0/0:235:234,0:234:8331:0:0:0,-70.441,-749.438	0/0:120:119,1:119:4218:1:36:0,-32.5253,-376.203	0/0:98:98,0:98:3490:0:0:0,-29.5009,-314.309	0/1:183:103,80:103:3696:80:2876:-203.988,0,-277.753	0/0:186:185,1:185:6632:1:36:0,-52.3933,-593.359	0/0:57:56,1:56:1989:1:36:0,-13.5604,-175.684	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:24:23,1:23:828:1:36:0,-3.62644,-71.2458	0/1:110:57,53:57:2025:53:1898:-137.985,0,-149.408	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:197:197,0:197:7040:0:0:0,-59.3029,-633.663	0/0:157:157,0:157:5593:0:0:0,-47.2617,-503.494	0/0:144:144,0:144:5168:0:0:0,-43.3483,-465.259	0/0:127:126,1:126:4505:1:36:0,-34.6325,-402.019	0/1:26:11,15:11:388:15:525:-39.7513,0,-27.4306	0/1:181:85,96:85:3036:96:3418:-253.345,0,-218.984	0/0:123:123,0:123:4389:0:0:0,-37.0267,-395.183	0/1:239:111,128:111:3911:128:4559:-338.528,0,-280.224	0/0:85:85,0:85:3045:0:0:0,-25.5875,-274.278	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.61	0/1:109:45,64:45:1616:64:2284:-173.007,0,-112.918	0/1:141:70,71:70:2493:71:2541:-186.494,0,-182.176	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:99:59,40:59:2104:40:1436:-99.7357,0,-159.828	0/1:117:44,73:44:1572:73:2619:-200.736,0,-106.551	0/1:112:44,68:44:1584:68:2434:-185.599,0,-109.136	0/1:153:70,83:70:2482:83:2939:-218.685,0,-177.573	0/1:99:35,64:35:1260:64:2281:-175.748,0,-83.9035	0/0:104:104,0:104:3671:0:0:0,-31.3071,-330.592	0/0:139:139,0:139:4968:0:0:0,-41.8432,-447.27
chr10	1483358	.	CGTAT	TGTAC,TGTAT	285553	PASS	AB=0.516147,0.477774;ABP=14.9319,25.5979;AC=137,51;AF=0.728723,0.271277;AN=188;AO=7573,2536;CIGAR=1X3M1X,1X4M;DP=10168;DPB=10168;DPRA=0,1.406;EPP=1590.57,666.097;EPPR=9.52472;GTI=0;LEN=5,1;MEANALT=2.24468,2.63492;MQM=59.9047,59.9113;MQMR=60;NS=94;NUMALT=2;ODDS=2.89421;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=264438,90571;QR=108;RO=3;RPL=935,296;RPP=9328.96,3238.93;RPPR=3.73412;RPR=6638,2240;RUN=1,1;SAF=3545,1124;SAP=69.9033,74.0318;SAR=4028,1412;SRF=1;SRP=3.73412;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:64:0,42,22:0:0:42,22:1454,773:-181.427,-63.2668,-50.6236,-118.509,0,-111.887	1/1:116:0,116,0:0:0:116,0:4045,0:-364.243,-34.9195,0,-364.243,-34.9195,-364.243	1/2:115:0,64,50:0:0:64,50:2259,1761:-327.317,-143.36,-124.094,-183.95,0,-168.898	1/2:196:0,125,69:0:0:125,69:4358,2471:-555.886,-201.475,-163.846,-354.455,0,-333.684	1/2:17:0,9,7:0:0:9,7:301,252:-45.0132,-20.6493,-17.9401,-24.4377,0,-22.3305	1/2:12:0,4,7:0:0:4,7:141,248:-31.6776,-20.1979,-18.9937,-11.4746,0,-9.36737	1/2:77:0,40,37:0:0:40,37:1399,1328:-222.488,-108.684,-96.6429,-114.158,0,-103.02	1/2:147:0,93,54:0:0:93,54:3231,1927:-420.117,-157.45,-129.455,-263.02,0,-246.764	1/2:118:0,68,50:0:0:68,50:2344,1788:-336.55,-146.151,-125.681,-190.751,0,-175.699	1/2:93:0,42,49:0:0:42,49:1479,1756:-263.616,-143.214,-130.57,-120.397,0,-105.647	1/2:123:0,66,57:0:0:66,57:2317,2044:-355.642,-167.073,-147.205,-188.924,0,-171.765	1/2:225:0,105,120:0:0:105,120:3677,4232:-644.088,-344.918,-313.31,-299.521,0,-263.398	1/1:191:0,190,1:0:0:190,1:6703,36:-602.963,-57.1957,0,-600.025,-53.8985,-599.724	1/1:124:0,122,0:0:0:122,0:4239,0:-381.392,-36.7257,0,-381.392,-36.7257,-381.392	1/1:144:0,144,0:0:0:144,0:5048,0:-454.474,-43.3483,0,-454.474,-43.3483,-454.474	1/1:144:0,141,3:0:0:141,3:4909,108:-441.611,-42.4452,0,-432.798,-33.2732,-431.895	1/2:87:0,41,45:0:0:41,45:1431,1603:-246.772,-130.382,-118.04,-116.382,0,-102.836	1/1:86:0,86,0:0:0:86,0:2995,0:-269.779,-25.8886,0,-269.779,-25.8886,-269.779	1/2:68:0,32,36:0:0:32,36:1128,1284:-196.867,-105.026,-95.3934,-92.1952,0,-81.3582	1/2:135:0,86,48:0:0:86,48:3026,1716:-386.239,-139.916,-114.028,-246.318,0,-231.868	1/2:200:0,106,93:0:0:106,93:3717,3328:-573.849,-271.378,-239.469,-302.466,0,-274.47	1/2:39:0,15,24:0:0:15,24:532,864:-114.199,-70.8578,-66.3424,-43.6977,0,-36.473	1/2:117:0,69,48:0:0:69,48:2425,1716:-337.65,-140.276,-119.505,-197.729,0,-183.28	1/2:70:0,34,35:0:0:34,35:1184,1260:-199.151,-102.875,-92.6402,-96.3348,0,-85.7988	1/2:61:0,37,24:0:0:37,24:1304,864:-177.025,-70.8578,-59.7197,-106.524,0,-99.2988	1/1:241:0,238,2:0:0:238,2:8299,57:-746.595,-71.6451,0,-742.069,-67.1687,-741.467	1/1:245:0,243,0:0:0:243,0:8535,0:-767.819,-73.1503,0,-767.819,-73.1503,-767.819	1/2:72:0,32,39:0:0:32,39:1120,1394:-204.672,-113.552,-103.919,-91.1137,0,-79.3735	1/2:234:0,121,111:0:0:121,111:4276,3961:-670.873,-322.628,-286.204,-348.338,0,-314.923	1/2:90:0,49,41:0:0:49,41:1733,1463:-260.772,-119.623,-104.872,-141.505,0,-129.163	1/1:95:0,94,0:0:0:94,0:3297,0:-296.662,-28.2968,0,-296.662,-28.2968,-296.662	1/1:7:0,6,0:0:0:6,0:211,0:-19.0174,-1.80618,0,-19.0174,-1.80618,-19.0174	1/2:9:0,6,3:0:0:6,3:213,108:-26.5242,-9.17208,-7.3659,-17.7102,0,-16.8071	1/1:2:0,2,0:0:0:2,0:66,0:-6.26795,-0.60206,0,-6.26795,-0.60206,-6.26795	1/1:2:0,2,0:0:0:2,0:61,0:-5.79407,-0.60206,0,-5.79407,-0.60206,-5.79407	1/1:17:0,17,0:0:0:17,0:589,0:-53.3342,-5.11751,0,-53.3342,-5.11751,-53.3342	1/1:392:0,388,1:0:0:388,1:13547,36:-1218.74,-116.8,0,-1215.8,-113.849,-1215.5	1/2:58:0,32,26:0:0:32,26:1126,936:-168.392,-76.7327,-67.0997,-92.0157,0,-84.1889	1/1:76:0,76,0:0:0:76,0:2664,0:-239.993,-22.8783,0,-239.993,-22.8783,-239.993	1/2:7:0,3,4:0:0:3,4:107,144:-20.8306,-12.1095,-11.2064,-9.07908,0,-7.87496	1/2:107:0,57,49:0:0:57,49:1986,1752:-304.355,-142.854,-125.695,-161.495,0,-146.744	1/2:60:0,36,23:0:0:36,23:1257,814:-168.599,-66.3551,-55.518,-102.294,0,-95.3702	1/2:98:0,51,46:0:0:51,46:1763,1648:-277.737,-134.489,-119.137,-143.327,0,-129.48	1/2:128:0,52,75:0:0:52,75:1801,2692:-365.95,-219.587,-203.934,-146.354,0,-123.777	1/1:147:0,145,1:0:0:145,1:5047,36:-454.028,-43.6494,0,-451.09,-40.7119,-450.789	1/1:70:0,70,0:0:0:70,0:2410,0:-217.156,-21.0721,0,-217.156,-21.0721,-217.156	1/1:81:0,81,0:0:0:81,0:2826,0:-254.584,-24.3834,0,-254.584,-24.3834,-254.584	1/2:132:0,73,59:0:0:73,59:2537,2104:-378.124,-171.869,-149.894,-206.608,0,-188.847	1/1:91:0,91,0:0:0:91,0:3196,0:-287.669,-27.3937,0,-287.669,-27.3937,-287.669	1/1:86:0,86,0:0:0:86,0:2988,0:-269.155,-25.8886,0,-269.155,-25.8886,-269.155	1/1:82:0,82,0:0:0:82,0:2892,0:-260.519,-24.6845,0,-260.519,-24.6845,-260.519	1/2:9:0,6,3:0:0:6,3:211,108:-26.3421,-9.17208,-7.3659,-17.5271,0,-16.624	1/2:99:0,54,45:0:0:54,45:1864,1604:-282.532,-131.104,-114.848,-151.779,0,-138.233	1/1:66:0,66,0:0:0:66,0:2269,0:-204.466,-19.868,0,-204.466,-19.868,-204.466	1/2:14:0,11,3:0:0:11,3:374,108:-39.4916,-9.17208,-5.86075,-30.6751,0,-29.772	1/1:135:0,134,1:0:0:134,1:4692,36:-422.089,-40.338,0,-419.151,-37.0408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chr10	1483372	.	GTT	GTC,TTC	267202	PASS	AB=0.502584,0.493589;ABP=3.31327,4.8759;AC=137,51;AF=0.728723,0.271277;AN=188;AO=7322,2595;CIGAR=2M1X,1X1M1X;DP=9950;DPB=9949.67;DPRA=0,1.14114;EPP=15885.2,5637.98;EPPR=7.35324;GTI=0;LEN=1,3;MEANALT=1.94681,2.36066;MQM=59.9013,59.8998;MQMR=60;NS=94;NUMALT=2;ODDS=5.89009;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=259095,90059;QR=72;RO=2;RPL=3401,1154;RPP=83.2023,71.9359;RPPR=3.0103;RPR=3921,1441;RUN=1,1;SAF=3401,1154;SAP=83.2023,71.9359;SAR=3921,1441;SRF=1;SRP=3.0103;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:65:0,41,24:0:0:41,24:1438,832:-184.992,-67.9706,-55.6284,-117.37,0,-110.145	1/1:110:0,109,1:0:0:109,1:3861,36:-347.323,-32.8123,0,-344.385,-29.515,-344.084	1/2:117:0,65,51:0:0:65,51:2306,1781:-332.819,-144.937,-125.37,-187.952,0,-172.6	1/2:193:0,119,74:0:0:119,74:4221,2524:-548.923,-205.109,-169.286,-344.161,0,-321.884	1/2:18:0,10,8:0:0:10,8:341,278:-50.6108,-22.9478,-19.9375,-28.0075,0,-25.5992	1/2:12:0,4,8:0:0:4,8:144,275:-34.4309,-22.6759,-21.4717,-12.1095,0,-9.70126	1/2:76:0,38,36:0:0:38,36:1335,1235:-208.953,-100.294,-88.8545,-108.689,0,-97.8522	1/2:143:0,88,54:0:0:88,54:3139,1875:-408.384,-152.489,-125.998,-255.964,0,-239.709	1/2:117:0,64,53:0:0:64,53:2279,1862:-337.657,-151.904,-132.638,-186.106,0,-170.151	1/2:95:0,43,52:0:0:43,52:1518,1837:-273.557,-149.956,-137.012,-123.954,0,-108.3	1/2:124:0,64,60:0:0:64,60:2287,2046:-352.822,-166.346,-147.08,-186.825,0,-168.763	1/2:226:0,100,126:0:0:100,126:3521,4311:-636.803,-350.16,-320.057,-286.99,0,-249.061	1/1:190:0,190,0:0:0:190,0:6756,0:-607.506,-57.1957,0,-607.506,-57.1957,-607.506	1/1:118:0,118,0:0:0:118,0:4123,0:-371.257,-35.5215,0,-371.257,-35.5215,-371.257	1/1:141:0,139,0:0:0:139,0:4861,0:-437.369,-41.8432,0,-437.369,-41.8432,-437.369	1/1:141:0,139,0:0:0:139,0:4948,0:-445.122,-41.8432,0,-445.122,-41.8432,-445.122	1/2:88:0,41,46:0:0:41,46:1426,1607:-246.654,-130.71,-118.368,-115.932,0,-102.085	1/1:80:0,80,0:0:0:80,0:2814,0:-253.495,-24.0824,0,-253.495,-24.0824,-253.495	1/2:68:0,30,35:0:0:30,35:1044,1203:-182.607,-97.7158,-88.6849,-84.9166,0,-74.3806	1/2:135:0,87,48:0:0:87,48:3111,1702:-392.681,-139.015,-112.826,-254.021,0,-239.571	1/2:197:0,101,94:0:0:101,94:3576,3307:-560.599,-269.308,-238.904,-291.397,0,-263.101	1/2:40:0,14,26:0:0:14,26:504,907:-115.244,-74.1161,-69.9017,-41.4837,0,-33.6569	1/2:113:0,64,49:0:0:64,49:2279,1716:-325.715,-139.972,-120.706,-186.096,0,-171.346	1/2:70:0,33,37:0:0:33,37:1171,1291:-200.392,-104.98,-95.0463,-95.7627,0,-84.6246	1/2:62:0,37,25:0:0:37,25:1297,858:-175.551,-70.0066,-58.8685,-105.89,0,-98.3642	1/1:232:0,230,1:0:0:230,1:8153,34:-733.483,-69.2369,0,-730.725,-66.4417,-730.424	1/1:243:0,243,0:0:0:243,0:8659,0:-779.306,-73.1503,0,-779.306,-73.1503,-779.306	1/2:70:0,30,40:0:0:30,40:1072,1394:-201.051,-113.643,-104.612,-87.7616,0,-75.7204	1/2:232:0,118,113:0:0:118,113:4203,3939:-662.656,-320.077,-284.556,-342.65,0,-308.634	1/2:90:0,48,42:0:0:48,42:1702,1469:-258.522,-119.859,-105.41,-139.015,0,-126.372	1/1:93:0,93,0:0:0:93,0:3332,0:-300.097,-27.9958,0,-300.097,-27.9958,-300.097	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:8:0,5,3:0:0:5,3:165,108:-22.4919,-9.17208,-7.66693,-13.6685,0,-12.7654	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:16:0,16,0:0:0:16,0:563,0:-50.9992,-4.81648,0,-50.9992,-4.81648,-50.9992	1/1:371:0,370,0:0:0:370,0:12973,0:-1167.04,-111.381,0,-1167.04,-111.381,-1167.04	1/2:58:0,31,27:0:0:31,27:1116,920:-166.048,-74.9779,-65.646,-91.4198,0,-83.292	1/1:69:0,69,0:0:0:69,0:2438,0:-219.63,-20.7711,0,-219.63,-20.7711,-219.63	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/2:104:0,54,49:0:0:54,49:1932,1695:-295.271,-137.722,-121.466,-157.541,0,-142.791	1/2:59:0,35,24:0:0:35,24:1232,826:-167.725,-67.4264,-56.8903,-100.646,0,-93.4212	1/2:98:0,49,49:0:0:49,49:1735,1705:-280.311,-138.98,-124.229,-141.682,0,-126.932	1/2:128:0,51,77:0:0:51,77:1800,2698:-366.461,-219.884,-204.532,-146.929,0,-123.75	1/1:143:0,143,0:0:0:143,0:5006,0:-450.694,-43.0473,0,-450.694,-43.0473,-450.694	1/1:67:0,63,1:0:0:63,1:2249,31:-202.343,-18.9649,0,-199.856,-16.4825,-199.555	1/1:77:0,77,0:0:0:77,0:2739,0:-246.753,-23.1793,0,-246.753,-23.1793,-246.753	1/2:128:0,67,59:0:0:67,59:2396,2081:-364.813,-169.44,-149.271,-195.368,0,-177.608	1/1:87:0,87,0:0:0:87,0:3081,0:-277.404,-26.1896,0,-277.404,-26.1896,-277.404	1/1:82:0,81,0:0:0:81,0:2878,0:-258.895,-24.3834,0,-258.895,-24.3834,-258.895	1/1:77:0,77,0:0:0:77,0:2728,0:-245.762,-23.1793,0,-245.762,-23.1793,-245.762	1/2:9:0,6,3:0:0:6,3:216,108:-26.7966,-9.17208,-7.3659,-17.9843,0,-17.0812	1/2:99:0,52,47:0:0:52,47:1844,1613:-281.532,-131.293,-115.64,-150.587,0,-136.438	1/1:62:0,62,0:0:0:62,0:2156,0:-194.3,-18.6639,0,-194.3,-18.6639,-194.3	1/2:13:0,10,3:0:0:10,3:356,104:-37.8222,-8.79993,-5.78963,-29.3709,0,-28.4679	1/1:131:0,130,1:0:0:130,1:4638,36:-417.222,-39.1339,0,-414.284,-35.8367,-413.983	1/2:44:0,21,23:0:0:21,23:748,780:-124.563,-63.5886,-57.267,-61.3218,0,-54.3981	1/2:18:0,7,11:0:0:7,11:250,390:-52.5104,-32.1269,-30.0197,-20.7395,0,-17.4281	1/2:18:0,7,11:0:0:7,11:248,374:-50.8827,-30.6743,-28.5671,-20.557,0,-17.2457	1/2:104:0,58,46:0:0:58,46:2066,1619:-300.533,-132.151,-114.691,-168.736,0,-154.889	1/2:170:0,78,92:0:0:78,92:2788,3148:-483.115,-255.854,-232.374,-227.611,0,-199.916	1/1:11:0,11,0:0:0:11,0:390,0:-35.4369,-3.31133,0,-35.4369,-3.31133,-35.4369	1/2:145:0,66,78:0:0:66,78:2345,2685:-409.293,-218.203,-198.335,-191.228,0,-167.748	1/1:154:0,151,3:0:0:151,3:5322,105:-478.757,-45.4555,0,-470.214,-36.5626,-469.311	1/1:96:0,96,0:0:0:96,0:3405,0:-306.655,-28.8989,0,-306.655,-28.8989,-306.655	1/1:82:0,82,0:0:0:82,0:2916,0:-262.543,-24.6845,0,-262.543,-24.6845,-262.543	1/2:145:0,92,53:0:0:92,53:3248,1842:-414.597,-150.101,-122.407,-264.845,0,-248.89	1/1:128:0,125,3:0:0:125,3:4419,108:-397.522,-37.6288,0,-388.71,-28.4567,-387.807	1/1:86:0,86,0:0:0:86,0:3008,0:-270.943,-25.8886,0,-270.943,-25.8886,-270.943	1/1:67:0,67,0:0:0:67,0:2350,0:-211.657,-20.169,0,-211.657,-20.169,-211.657	1/1:78:1,77,0:1:36:77,0:2723,0:-241.711,-19.8821,0,-242.012,-23.1793,-244.95	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/2:76:0,43,32:0:0:43,32:1536,1102:-214.712,-89.491,-76.5467,-125.211,0,-115.578	1/1:120:0,119,1:0:0:119,1:4205,36:-378.268,-35.8226,0,-375.33,-32.5253,-375.029	1/1:212:0,209,2:0:0:209,2:7385,59:-664.162,-62.9153,0,-659.456,-58.2525,-658.854	1/1:193:0,193,0:0:0:193,0:6877,0:-618.976,-58.0988,0,-618.976,-58.0988,-618.976	1/1:48:0,48,0:0:0:48,0:1688,0:-152.196,-14.4494,0,-152.196,-14.4494,-152.196	1/1:120:0,118,2:0:0:118,2:4187,72:-376.652,-35.5215,0,-370.777,-29.2869,-370.175	1/2:20:0,6,14:0:0:6,14:216,487:-57.5724,-39.9442,-38.138,-17.9843,0,-13.7699	1/2:141:0,80,61:0:0:80,61:2864,2149:-408.873,-175.313,-151.23,-233.915,0,-215.552	1/1:131:0,131,0:0:0:131,0:4615,0:-415.464,-39.4349,0,-415.464,-39.4349,-415.464	1/2:231:0,121,108:0:0:121,108:4232,3750:-649.187,-304.948,-268.523,-344.34,0,-311.828	1/1:109:0,109,0:0:0:109,0:3861,0:-347.683,-32.8123,0,-347.683,-32.8123,-347.683	1/1:127:0,127,0:0:0:127,0:4518,0:-406.657,-38.2308,0,-406.657,-38.2308,-406.657	1/2:105:0,41,64:0:0:41,64:1445,2205:-297.099,-179.445,-167.103,-118.002,0,-98.7366	1/2:263:0,115,148:0:0:115,148:4086,5119:-748.91,-415.953,-381.334,-332.949,0,-288.396	1/1:39:0,39,0:0:0:39,0:1355,0:-122.245,-11.7402,0,-122.245,-11.7402,-122.245	1/2:144:0,57,87:0:0:57,87:2006,2990:-406.4,-243.142,-225.983,-163.606,0,-137.417	1/2:130:0,69,61:0:0:69,61:2443,2138:-373.32,-174.325,-153.554,-199.347,0,-180.984	1/2:93:1,39,53:1:36:39,53:1387,1817:-256.974,-144.555,-135.752,-109.773,0,-96.7559	1/2:156:0,80,75:0:0:80,75:2805,2612:-440.625,-212.365,-188.282,-228.269,0,-205.692	1/2:160:0,44,116:0:0:44,116:1562,4050:-457.044,-329.772,-316.527,-127.625,0,-92.7056	1/1:106:0,106,0:0:0:106,0:3778,0:-340.119,-31.9092,0,-340.119,-31.9092,-340.119	1/1:251:0,249,1:0:0:249,1:8728,34:-785.175,-74.9565,0,-782.417,-72.2084,-782.116
chr10	1483539	.	G	C	136361	PASS	AB=0.481034;ABP=19.3188;AC=136;AF=0.731183;AN=186;AO=6595;CIGAR=1X;DP=9311;DPB=9311;DPRA=0;EPP=14211.2;EPPR=5695.99;GTI=1;LEN=1;MEANALT=1.07527;MQM=59.5513;MQMR=59.9616;NS=93;NUMALT=1;ODDS=0.231646;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235073;QR=96477;RO=2709;RPL=6582;RPP=14211.2;RPPR=5695.99;RPR=13;RUN=1;SAF=0;SAP=14323.9;SAR=6595;SRF=0;SRP=5885.53;SRR=2709;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:9,7:9:320:7:248:-17.8477,0,-24.3259	1/1:111:0,111:0:0:111:3942:-354.946,-33.4143,0	0/1:140:75,65:75:2662:65:2311:-166.082,0,-197.682	0/1:173:92,81:92:3286:81:2867:-206.099,0,-243.881	0/1:48:25,23:25:896:23:816:-59.304,0,-66.5109	0/1:25:8,17:8:275:17:603:-47.0397,0,-17.5577	0/1:101:51,50:51:1819:50:1796:-131.511,0,-133.586	0/1:140:81,59:81:2866:59:2112:-147.706,0,-216.034	0/1:33:20,13:20:707:13:464:-32.1635,0,-54.0206	0/1:67:27,40:27:937:40:1427:-108.555,0,-64.4719	0/1:145:79,66:79:2824:66:2343:-167.381,0,-210.705	0/1:75:41,34:41:1468:34:1207:-86.3534,0,-109.839	1/1:90:0,89:0:0:89:3176:-285.614,-26.7917,0	1/1:166:0,166:0:0:166:5917:-532.448,-49.971,0	1/1:69:0,69:0:0:69:2476:-223.082,-20.7711,0	1/1:77:0,77:0:0:77:2756:-248.096,-23.1793,0	0/1:102:44,58:44:1567:58:2060:-154.95,0,-110.616	1/1:86:0,86:0:0:86:3068:-276.346,-25.8886,0	0/1:69:35,34:35:1228:34:1224:-89.6796,0,-90.05	0/1:262:120,142:120:4295:142:5058:-376.457,0,-307.857	0/1:85:35,49:35:1252:49:1756:-132.668,0,-87.3388	0/1:133:89,43:89:3137:43:1520:-96.9954,0,-242.462	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:67:35,32:35:1260:32:1152:-83.8165,0,-93.5365	0/1:72:43,29:43:1536:29:1036:-71.7434,0,-116.859	1/1:282:1,281:1:32:281:9992:-895.935,-81.6911,0	1/1:186:0,186:0:0:186:6620:-595.707,-55.9916,0	0/1:33:16,17:16:572:17:612:-45.462,0,-41.8794	0/1:339:180,159:180:6442:159:5679:-409.112,0,-477.816	0/1:198:86,112:86:3070:112:3979:-298.622,0,-216.924	1/1:54:0,54:0:0:54:1888:-170.165,-16.2556,0	1/1:6:0,6:0:0:6:216:-19.7858,-1.80618,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:6:0,6:0:0:6:205:-18.7747,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.4043,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.0207,-2.10721,0	1/1:170:0,170:0:0:170:6056:-545.133,-51.1751,0	0/1:244:122,122:122:4343:122:4337:-317.027,0,-317.596	1/1:130:0,130:0:0:130:4590:-412.786,-39.1339,0	.:.:.:.:.:.:.:.	0/1:148:74,74:74:2660:74:2638:-193.081,0,-195.093	0/1:52:26,26:26:936:26:932:-68.5315,0,-68.9059	0/1:108:53,54:53:1888:54:1931:-141.491,0,-137.628	0/1:70:39,31:39:1387:31:1104:-78.5976,0,-104.056	1/1:50:0,50:0:0:50:1800:-161.374,-15.0515,0	1/1:44:0,44:0:0:44:1568:-141.408,-13.2453,0	1/1:113:0,113:0:0:113:4019:-361.787,-34.0164,0	0/1:143:75,68:75:2656:68:2428:-175.64,0,-196.238	1/1:95:0,95:0:0:95:3395:-305.61,-28.5979,0	1/1:168:0,168:0:0:168:6000:-540.089,-50.573,0	1/1:120:0,120:0:0:120:4275:-384.92,-36.1236,0	0/1:6:2,4:2:72:4:144:-11.3306,0,-5.03054	0/1:142:67,75:67:2391:75:2688:-199.367,0,-172.701	1/1:102:0,102:0:0:102:3630:-326.804,-30.7051,0	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	1/1:123:0,123:0:0:123:4388:-395.018,-37.0267,0	0/1:23:12,11:12:432:11:396:-29.0567,0,-32.2975	0/1:9:8,1:8:275:1:36:-0.889005,0,-22.3742	0/1:22:9,13:9:320:13:464:-35.4739,0,-22.247	0/1:88:46,42:46:1640:42:1508:-109.522,0,-121.398	0/1:228:122,106:122:4346:106:3796:-273.192,0,-322.681	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:174:83,91:83:2963:91:3237:-239.166,0,-214.524	1/1:161:0,161:0:0:161:5730:-515.804,-48.4658,0	1/1:98:0,98:0:0:98:3508:-315.906,-29.5009,0	1/1:60:0,60:0:0:60:2122:-191.228,-18.0618,0	0/1:73:39,34:39:1396:34:1208:-87.0429,0,-103.964	1/1:93:0,93:0:0:93:3323:-299.197,-27.9958,0	1/1:80:0,79:0:0:79:2819:-252.215,-23.7814,0	1/1:87:0,87:0:0:87:3102:-279.339,-26.1896,0	1/1:103:0,103:0:0:103:3684:-331.757,-31.0061,0	1/1:33:0,33:0:0:33:1184:-106.864,-9.93399,0	0/1:143:84,59:84:2994:59:2116:-147.637,0,-226.639	1/1:71:0,71:0:0:71:2533:-228.193,-21.3731,0	1/1:109:0,108:0:0:108:3832:-344.683,-32.5112,0	1/1:135:0,135:0:0:135:4793:-431.516,-40.6391,0	1/1:87:0,87:0:0:87:3104:-279.059,-26.1896,0	1/1:108:0,107:0:0:107:3813:-342.978,-32.2102,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:103:63,40:63:2245:40:1428:-97.7849,0,-171.176	1/1:157:1,156:1:36:156:5584:-499.022,-43.6634,0	0/1:216:98,118:98:3477:118:4188:-312.02,0,-248.12	1/1:103:0,103:0:0:103:3674:-330.82,-31.0061,0	1/1:119:0,119:0:0:119:4268:-384.204,-35.8226,0	0/1:77:33,44:33:1167:44:1560:-117.505,0,-81.966	0/1:133:67,66:67:2388:66:2364:-172.974,0,-175.141	1/1:26:0,26:0:0:26:928:-83.8016,-7.82678,0	0/1:90:47,43:47:1676:43:1531:-110.961,0,-124.032	0/1:84:46,38:46:1656:38:1336:-95.2416,0,-124.039	0/1:134:82,52:82:2899:52:1859:-127.227,0,-220.809	0/1:285:155,130:155:5495:130:4643:-331.016,0,-408.887	0/1:60:39,21:39:1392:21:756:-50.3054,0,-107.517	1/1:96:0,96:0:0:96:3432:-308.278,-28.8989,0	1/1:101:1,100:1:32:100:3541:-315.691,-27.2047,0
chr10	1483554	.	G	A	138606	PASS	AB=0.492209;ABP=5.71724;AC=136;AF=0.731183;AN=186;AO=6637;CIGAR=1X;DP=9253;DPB=9253;DPRA=0;EPP=14311;EPPR=5672.72;GTI=0;LEN=1;MEANALT=1.05376;MQM=59.5549;MQMR=59.959;NS=93;NUMALT=1;ODDS=2.05858;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237785;QR=92731;RO=2611;RPL=6625;RPP=14311;RPPR=5672.72;RPR=12;RUN=1;SAF=0;SAP=14415.1;SAR=6637;SRF=0;SRP=5672.72;SRR=2611;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:112:0,112:0:0:112:4020:-361.955,-33.7154,0	0/1:137:73,64:73:2600:64:2304:-166.355,0,-193.008	0/1:168:89,79:89:3176:79:2824:-203.777,0,-235.492	0/1:47:24,23:24:856:23:828:-60.682,0,-63.2127	0/1:24:7,17:7:248:17:604:-47.4544,0,-15.4395	0/1:100:49,51:49:1744:51:1813:-133.34,0,-127.141	0/1:135:74,61:74:2636:61:2192:-156.416,0,-196.849	0/1:33:20,13:20:696:13:468:-32.5257,0,-53.0284	0/1:64:24,40:24:848:40:1440:-110.632,0,-57.3737	0/1:141:76,65:76:2719:65:2340:-168.3,0,-202.463	0/1:78:42,36:42:1482:36:1279:-91.9265,0,-110.193	1/1:91:0,91:0:0:91:3268:-294.255,-27.3937,0	1/1:169:0,169:0:0:169:6075:-546.636,-50.8741,0	1/1:66:0,66:0:0:66:2372:-213.728,-19.868,0	1/1:77:0,77:0:0:77:2761:-248.662,-23.1793,0	0/1:102:44,58:44:1568:58:2088:-157.468,0,-110.707	1/1:85:0,85:0:0:85:3044:-274.181,-25.5876,0	0/1:67:32,35:32:1148:35:1251:-92.7089,0,-83.4608	0/1:260:117,143:117:4192:143:5117:-382.366,0,-299.193	0/1:85:34,51:34:1200:51:1824:-138.844,0,-82.7181	0/1:129:85,44:85:3004:44:1571:-102.844,0,-231.761	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/1:67:35,32:35:1243:32:1152:-83.8119,0,-92.0049	0/1:71:42,29:42:1496:29:1044:-72.7626,0,-113.561	1/1:281:1,279:1:32:279:9968:-893.755,-81.429,0	1/1:190:1,189:1:36:189:6780:-606.488,-53.5974,0	0/1:32:15,17:15:532:17:608:-45.4044,0,-38.5801	0/1:333:173,160:173:6176:160:5734:-415.495,0,-455.697	0/1:194:84,110:84:2999:110:3956:-297.677,0,-211.742	1/1:53:0,53:0:0:53:1892:-170.455,-15.9546,0	1/1:6:0,6:0:0:6:212:-19.4229,-1.80618,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:7:0,7:0:0:7:248:-22.6526,-2.10721,0	1/1:6:0,6:0:0:6:212:-19.0386,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.0207,-2.10721,0	1/1:171:0,171:0:0:171:6133:-552.026,-51.4761,0	0/1:240:118,122:118:4187:122:4373:-321.458,0,-304.768	1/1:127:0,127:0:0:127:4535:-408.199,-38.2308,0	.:.:.:.:.:.:.:.	0/1:145:72,73:72:2553:73:2612:-191.66,0,-186.37	0/1:49:24,25:24:834:25:891:-65.7445,0,-60.6251	0/1:107:53,54:53:1896:54:1944:-143.017,0,-138.708	0/1:69:38,31:38:1347:31:1116:-79.9783,0,-100.6	1/1:49:0,49:0:0:49:1759:-157.695,-14.7505,0	1/1:43:0,43:0:0:43:1535:-138.44,-12.9443,0	1/1:113:0,113:0:0:113:4044:-364.091,-34.0164,0	0/1:143:74,69:74:2625:69:2476:-179.949,0,-193.449	1/1:97:0,97:0:0:97:3461:-311.535,-29.1999,0	1/1:168:1,167:1:36:167:5968:-533.609,-46.9748,0	1/1:119:0,118:0:0:118:4232:-380.692,-35.5215,0	0/1:6:2,4:2:72:4:144:-11.3306,0,-5.03054	0/1:142:67,75:67:2392:75:2688:-199.357,0,-172.791	1/1:105:0,105:0:0:105:3768:-339.206,-31.6082,0	0/1:14:11,3:11:388:3:108:-5.86075,0,-31.0429	1/1:123:0,123:0:0:123:4406:-396.638,-37.0267,0	0/1:22:12,10:12:432:10:360:-26.1193,0,-32.5985	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:21:9,12:9:312:12:428:-32.5363,0,-21.9618	0/1:90:46,44:46:1640:44:1584:-115.757,0,-120.796	0/1:226:119,107:119:4195:107:3844:-278.11,0,-309.702	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:171:80,91:80:2844:91:3264:-242.441,0,-204.723	1/1:166:0,166:0:0:166:5938:-534.511,-49.971,0	1/1:99:0,99:0:0:99:3548:-318.405,-29.802,0	1/1:61:0,61:0:0:61:2192:-197.525,-18.3628,0	0/1:66:33,33:33:1176:33:1188:-87.3478,0,-86.2798	1/1:93:0,93:0:0:93:3340:-300.726,-27.9958,0	1/1:79:0,79:0:0:79:2820:-253.326,-23.7814,0	1/1:88:0,88:0:0:88:3130:-281.824,-26.4906,0	1/1:105:0,105:0:0:105:3751:-337.784,-31.6082,0	1/1:33:0,33:0:0:33:1180:-106.505,-9.93399,0	0/1:142:82,60:82:2916:60:2147:-150.733,0,-219.93	1/1:71:0,71:0:0:71:2556:-230.257,-21.3731,0	1/1:110:0,110:0:0:110:3934:-354.215,-33.1133,0	1/1:136:0,136:0:0:136:4892:-440.286,-40.9401,0	1/1:92:0,91:0:0:91:3271:-294.252,-27.3937,0	1/1:109:0,109:0:0:109:3905:-351.609,-32.8123,0	0/1:7:5,2:5:172:2:72:-4.72951,0,-13.7108	0/1:102:60,42:60:2140:42:1500:-104.568,0,-162.106	1/1:160:1,159:1:32:159:5662:-506.429,-44.9655,0	0/1:213:93,119:93:3288:119:4259:-319.444,0,-232.113	1/1:104:0,103:0:0:103:3688:-331.761,-31.0061,0	1/1:119:0,119:0:0:119:4284:-385.642,-35.8226,0	0/1:76:30,46:30:1055:46:1652:-126.083,0,-72.3817	0/1:127:61,66:61:2157:66:2368:-175.14,0,-156.165	1/1:26:0,26:0:0:26:927:-83.7107,-7.82678,0	0/1:88:44,44:44:1555:44:1584:-116.319,0,-113.74	0/1:84:45,39:45:1600:39:1400:-101.004,0,-119.002	0/1:134:80,54:80:2821:54:1936:-134.143,0,-213.792	0/1:282:149,133:149:5272:133:4756:-341.958,0,-389.73	0/1:56:36,20:36:1267:20:716:-47.91,0,-97.4742	1/1:98:0,98:0:0:98:3495:-314.014,-29.5009,0	1/1:102:1,101:1:36:101:3616:-322.028,-27.1068,0
chr10	1498910	.	T	A	89624.8	PASS	AB=0.622709;ABP=331.288;AC=140;AF=0.752688;AN=186;AO=4240;CIGAR=1X;DP=5210;DPB=5210;DPRA=0;EPP=9210.05;EPPR=2109.34;GTI=4;LEN=1;MEANALT=1;MQM=59.9307;MQMR=49.8113;NS=93;NUMALT=1;ODDS=1.5485;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151993;QR=34738;RO=970;RPL=0;RPP=9210.05;RPPR=89.0096;RPR=4240;RUN=1;SAF=4240;SAP=9210.05;SAR=0;SRF=583;SRP=89.0096;SRR=387;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:54:20,34:20:708:34:1224:-94.189,0,-46.2772	0/1:123:44,79:44:1568:79:2832:-218.069,0,-97.2483	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-9.35042	0/1:44:14,30:14:504:30:1076:-83.9075,0,-29.8451	0/1:47:14,33:14:500:33:1165:-90.9203,0,-29.362	0/1:43:14,29:14:500:29:1044:-81.2698,0,-31.4816	0/1:71:41,30:41:1476:30:1076:-75.7797,0,-104.404	0/1:67:37,30:37:1332:30:1080:-77.3442,0,-94.3996	0/1:74:29,45:29:1040:45:1620:-123.814,0,-67.0096	1/1:80:2,78:2:72:78:2808:-246.122,-17.2457,0	1/1:75:1,74:1:36:74:2656:-235.687,-18.979,0	1/1:68:1,67:1:36:67:2397:-212.358,-16.8718,0	1/1:58:2,56:2:72:56:2008:-174.149,-10.623,0	0/1:35:6,29:6:216:29:1044:-83.7388,0,-8.93169	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:29:5,24:5:180:24:849:-67.998,0,-7.22294	0/1:25:6,19:6:216:19:684:-54.3646,0,-10.759	0/1:163:77,86:77:2725:86:3072:-227.641,0,-192.932	0/1:21:6,15:6:216:15:540:-42.6145,0,-11.2103	0/1:35:12,23:12:428:23:828:-64.3081,0,-27.5767	0/1:26:8,18:8:288:18:648:-50.8251,0,-17.3694	0/1:19:5,14:5:180:14:504:-39.9785,0,-9.53671	1/1:149:0,149:0:0:149:5343:-481.002,-44.8535,0	1/1:143:1,142:1:36:142:5096:-455.174,-39.449,0	0/1:24:5,19:5:180:19:684:-54.6656,0,-8.3555	0/1:100:28,72:28:1000:72:2573:-201.709,0,-53.9045	0/1:79:18,61:18:640:61:2173:-172.053,0,-32.2348	1/1:85:0,85:0:0:85:3052:-274.897,-25.5876,0	1/1:2:0,2:0:0:2:72:-6.8332,-0.60206,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:169:1,168:1:36:168:6025:-538.724,-47.2758,0	0/1:25:10,15:10:360:15:540:-41.4104,0,-23.296	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	.:.:.:.:.:.:.:.	0/1:54:7,47:7:248:47:1684:-135.587,0,-5.44277	0/1:31:15,16:15:536:16:572:-42.4815,0,-38.1259	0/1:34:14,20:14:489:20:720:-54.8938,0,-29.1181	0/1:51:25,26:25:896:26:936:-69.2069,0,-63.0092	1/1:54:1,53:1:36:53:1908:-168.399,-12.6573,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:48:0,48:0:0:48:1728:-155.805,-14.4494,0	0/1:60:26,34:26:932:34:1197:-89.9716,0,-64.6518	1/1:56:0,56:0:0:56:2012:-181.325,-16.8577,0	1/1:77:0,77:0:0:77:2749:-247.651,-23.1793,0	1/1:65:0,65:0:0:65:2331:-210.044,-19.567,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:58:9,49:9:324:49:1756:-140.864,0,-10.811	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.34307	1/1:87:2,85:2:72:85:3056:-268.432,-19.3529,0	0/1:15:2,13:2:72:13:468:-37.9442,0,-1.93115	1/1:7:0,7:0:0:7:248:-22.6595,-2.10721,0	0/1:18:3,15:3:108:15:540:-43.518,0,-4.65663	0/1:46:11,35:11:396:35:1256:-99.4979,0,-21.4952	0/1:114:43,71:43:1536:71:2548:-194.91,0,-98.3321	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:164:109,55:109:3908:55:1965:-127.753,0,-285.546	1/1:78:0,78:0:0:78:2796:-251.863,-23.4803,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:45:0,45:0:0:45:1597:-144.018,-13.5464,0	0/1:71:14,57:14:500:57:2044:-162.855,0,-21.4085	1/1:101:0,101:0:0:101:3628:-326.721,-30.404,0	1/1:64:1,63:1:36:63:2241:-198.354,-15.6676,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	0/1:62:15,47:15:536:47:1684:-133.183,0,-27.0222	1/1:89:2,87:2:72:87:3120:-274.189,-19.9549,0	1/1:88:0,88:0:0:88:3144:-283.186,-26.4906,0	1/1:97:1,96:1:36:96:3448:-306.934,-25.6016,0	1/1:30:1,29:1:36:29:1036:-89.9556,-5.43263,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:49:22,27:22:792:27:972:-73.0474,0,-49.9073	1/1:59:1,58:1:36:58:2072:-183.152,-14.1625,0	0/1:86:23,63:23:828:63:2264:-178.123,0,-43.385	1/1:61:1,60:1:36:60:2160:-191.068,-14.7646,0	1/1:72:1,71:1:36:71:2544:-225.612,-18.0759,0	0/1:31:10,21:10:356:21:756:-59.0353,0,-21.7684	0/1:99:50,49:50:1800:49:1760:-128.851,0,-125.919	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	0/1:57:27,30:27:972:30:1076:-79.9941,0,-67.1389	0/1:52:23,29:23:828:29:1040:-78.2608,0,-56.2297	0/1:39:15,24:15:540:24:860:-65.9817,0,-36.8771	0/1:150:48,102:48:1728:102:3626:-281.361,0,-105.109	0/1:36:27,9:27:968:9:324:-18.6688,0,-70.657	1/1:113:1,112:1:36:112:4020:-358.388,-30.4181,0	1/1:97:3,94:3:108:94:3384:-294.698,-19.1247,0
chr10	1517861	.	CGGAC	CGGAT,TGGAT	149017	PASS	AB=0.458941,0.535957;ABP=63.2818,49.2338;AC=136,50;AF=0.731183,0.268817;AN=186;AO=4904,2237;CIGAR=4M1X,1X3M1X;DP=7182;DPB=7182.2;DPRA=0,1.36371;EPP=10634.5,4860.59;EPPR=7.35324;GTI=5;LEN=1,5;MEANALT=1.95699,2.41071;MQM=59.9923,59.9821;MQMR=60;NS=93;NUMALT=2;ODDS=0.318042;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=174026,77900;QR=72;RO=2;RPL=2,0;RPP=10634.5,4860.59;RPPR=7.35324;RPR=4902,2237;RUN=1,1;SAF=0,0;SAP=10651.9,4860.59;SAR=4904,2237;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:61:0,27,34:0:0:27,34:956,1191:-175.136,-97.2602,-89.1324,-78.2279,0,-67.9929	1/1:52:0,52,0:0:0:52,0:1844,0:-166.238,-15.6536,0,-166.238,-15.6536,-166.238	1/2:59:0,31,28:0:0:31,28:1095,971:-168.449,-79.2723,-69.9404,-89.5263,0,-81.0975	1/2:101:0,58,42:0:0:58,42:2036,1440:-282.703,-116.997,-99.5375,-165.799,0,-153.156	1/2:41:0,19,22:0:0:19,22:657,783:-117.552,-64.1717,-58.4521,-53.7309,0,-47.1082	1/2:34:1,23,10:1:36:23,10:820,342:-91.354,-24.8025,-20.8178,-63.9016,0,-63.8288	1/2:111:0,55,56:0:0:55,56:1957,1948:-318.234,-158.737,-142.18,-159.849,0,-142.991	1/2:51:0,21,29:0:0:21,29:756,1028:-145.442,-83.7537,-77.4321,-61.6953,0,-52.9654	1/2:108:0,41,67:0:0:41,67:1445,2335:-307.826,-190.183,-177.841,-117.936,0,-97.7666	1/2:70:0,28,42:0:0:28,42:981,1461:-198.964,-119.141,-110.712,-80.1722,0,-67.5289	1/2:90:0,35,55:0:0:35,55:1235,1905:-255.735,-155.168,-144.632,-100.917,0,-84.3608	1/2:136:0,63,73:0:0:63,73:2251,2492:-386.084,-202.546,-183.581,-183.888,0,-161.912	1/1:81:0,80,1:0:0:80,1:2858,34:-257.118,-24.0824,0,-254.36,-20.9845,-254.059	1/1:108:0,106,2:0:0:106,2:3756,71:-337.886,-31.9092,0,-332.101,-25.7692,-331.499	1/1:81:0,81,0:0:0:81,0:2885,0:-259.885,-24.3834,0,-259.885,-24.3834,-259.885	1/1:72:0,72,0:0:0:72,0:2576,0:-232.09,-21.6742,0,-232.09,-21.6742,-232.09	1/2:55:0,25,30:0:0:25,30:900,1043:-158.589,-85.1482,-77.6225,-73.7953,0,-64.7644	1/1:35:0,35,0:0:0:35,0:1224,0:-110.461,-10.5361,0,-110.461,-10.5361,-110.461	1/2:44:0,10,34:0:0:10,34:360,1183:-125.916,-96.5387,-93.5284,-29.734,0,-19.499	1/2:116:0,71,45:0:0:71,45:2523,1554:-332.2,-126.602,-105.228,-205.948,0,-192.401	1/2:154:0,54,99:0:0:54,99:1940,3456:-439.412,-281.146,-264.891,-158.31,0,-128.508	1/2:77:0,32,45:0:0:32,45:1148,1577:-222.316,-128.674,-119.041,-93.9969,0,-80.4505	1/2:80:0,40,40:0:0:40,40:1440,1394:-231.217,-113.714,-101.673,-117.857,0,-105.815	1/2:42:0,22,20:0:0:22,20:765,698:-119.319,-57.1225,-50.4998,-62.5451,0,-56.5245	1/2:101:0,50,51:0:0:50,51:1778,1760:-288.229,-143.329,-128.278,-145.251,0,-129.898	1/1:139:0,137,1:0:0:137,1:4843,35:-435.672,-41.2411,0,-432.825,-38.3984,-432.524	1/1:190:0,190,0:0:0:190,0:6802,0:-612.251,-57.1957,0,-612.251,-57.1957,-612.251	1/2:34:0,13,20:0:0:13,20:456,689:-93.0617,-55.9504,-52.037,-37.1007,0,-31.0801	1/2:302:0,126,174:0:0:126,174:4508,6098:-863.85,-496.245,-458.316,-367.648,0,-315.269	1/2:98:0,44,53:0:0:44,53:1552,1830:-275.129,-148.753,-135.508,-126.452,0,-110.498	1/1:90:0,88,1:0:0:88,1:3099,33:-278.79,-26.4906,0,-276.123,-23.8374,-275.821	1/1:5:0,5,0:0:0:5,0:165,0:-15.1736,-1.50515,0,-15.1736,-1.50515,-15.1736	1/2:12:0,5,7:0:0:5,7:176,246:-34.7032,-20.3749,-18.8698,-14.6799,0,-12.5727	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:6:0,6,0:0:0:6,0:207,0:-18.9669,-1.80618,0,-18.9669,-1.80618,-18.9669	1/1:241:0,238,0:0:0:238,0:8537,0:-767.985,-71.6451,0,-767.985,-71.6451,-767.985	1/2:83:0,41,42:0:0:41,42:1443,1466:-237.063,-119.591,-107.248,-117.823,0,-105.18	1/1:73:0,70,0:0:0:70,0:2478,0:-222.984,-21.0721,0,-222.984,-21.0721,-222.984	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:82:0,37,45:0:0:37,45:1301,1570:-233.944,-128.043,-116.905,-106.251,0,-92.7048	1/2:41:0,12,29:0:0:12,29:424,1019:-117.824,-83.2928,-79.6805,-34.8841,0,-26.1542	1/2:138:0,78,59:0:0:78,59:2778,2043:-392.453,-166.023,-142.542,-226.422,0,-208.661	1/2:69:0,29,40:0:0:29,40:1020,1402:-197.464,-114.435,-105.706,-83.3795,0,-71.3383	1/1:60:0,60,0:0:0:60,0:2148,0:-193.587,-18.0618,0,-193.587,-18.0618,-193.587	1/1:54:0,54,0:0:0:54,0:1911,0:-172.266,-16.2556,0,-172.266,-16.2556,-172.266	1/1:52:0,52,0:0:0:52,0:1856,0:-167.32,-15.6536,0,-167.32,-15.6536,-167.32	1/2:156:0,56,98:0:0:56,98:1980,3368:-434.817,-273.549,-256.692,-161.323,0,-131.822	1/1:81:0,81,0:0:0:81,0:2855,0:-257.189,-24.3834,0,-257.189,-24.3834,-257.189	1/1:75:0,71,1:0:0:71,1:2515,35:-226.279,-21.3731,0,-223.431,-18.5162,-223.13	1/1:51:0,51,0:0:0:51,0:1802,0:-162.462,-15.3525,0,-162.462,-15.3525,-162.462	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:53:0,25,28:0:0:25,28:881,965:-150.461,-78.73,-71.2042,-72.0801,0,-63.6513	1/1:45:0,45,0:0:0:45,0:1589,0:-143.298,-13.5464,0,-143.298,-13.5464,-143.298	1/2:9:0,3,6:0:0:3,6:108,211:-26.3421,-17.5271,-16.624,-9.17208,0,-7.3659	1/1:79:0,76,2:0:0:76,2:2690,72:-242.021,-22.8783,0,-236.146,-16.9236,-235.544	1/2:37:0,13,24:0:0:13,24:453,843:-105.801,-68.9641,-65.0507,-37.1862,0,-29.9615	1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chr10	1518872	.	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chr10	1550422	.	T	G	24200	PASS	AB=0.34253;ABP=1111.59;AC=48;AF=0.258065;AN=186;AO=1768;CIGAR=1X;DP=10760;DPB=10760;DPRA=1.03119;EPP=3842.17;EPPR=19526.7;GTI=9;LEN=1;MEANALT=1;MQM=60;MQMR=59.994;NS=93;NUMALT=1;ODDS=0.422269;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63187;QR=303037;RO=8991;RPL=1768;RPP=3842.17;RPPR=19526.7;RPR=0;RUN=1;SAF=0;SAP=3842.17;SAR=1768;SRF=0;SRP=19526.7;SRR=8991;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:29,9:29:970:9:320:-17.7032,0,-76.1635	0/0:103:103,0:103:3563:0:0:0,-31.0061,-320.884	0/1:200:131,69:131:4484:69:2441:-159.739,0,-343.539	0/1:253:160,93:160:5281:93:3324:-223.218,0,-399.297	0/1:36:29,7:29:958:7:252:-12.1919,0,-75.6842	0/1:32:28,4:28:925:4:144:-3.68066,0,-73.9184	0/1:72:49,23:49:1636:23:824:-52.8092,0,-125.355	0/1:149:119,30:119:4061:30:1080:-52.6598,0,-320.835	0/1:131:85,46:85:2839:46:1641:-108.544,0,-216.315	0/1:94:69,25:69:2265:25:892:-52.3029,0,-175.807	0/1:16:8,8:8:269:8:284:-21.0869,0,-19.7192	0/1:55:34,21:34:1176:21:748:-51.0886,0,-89.5875	0/0:85:85,0:85:2958:0:0:0,-25.5875,-266.456	0/0:42:42,0:42:1438:0:0:0,-12.6433,-129.71	0/0:69:69,0:69:2336:0:0:0,-20.7711,-210.498	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:20:16,4:16:564:4:144:-7.29302,0,-45.0697	0/0:38:38,0:38:1333:0:0:0,-11.4391,-120.268	0/1:12:3,9:3:93:9:324:-25.8935,0,-5.06437	0/1:224:155,69:155:5178:69:2464:-154.584,0,-398.756	0/1:227:146,81:146:4747:81:2888:-191.823,0,-359.073	0/1:78:50,28:50:1641:28:1008:-67.556,0,-124.487	0/0:251:251,0:251:8679:0:0:0,-75.5585,-781.141	0/1:114:64,50:64:2075:50:1788:-126.885,0,-152.697	0/1:45:37,8:37:1227:8:288:-12.7211,0,-97.1762	0/0:409:409,0:409:14019:0:0:0,-123.121,-1261.55	0/0:312:312,0:312:10410:0:0:0,-93.9214,-936.894	0/1:29:14,15:14:480:15:531:-39.392,0,-34.7967	0/1:320:213,107:213:7031:107:3832:-248.747,0,-536.576	0/1:183:128,55:128:4423:55:1968:-122.307,0,-343.162	0/0:153:153,0:153:5030:0:0:0,-46.0576,-452.875	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:14:14,0:14:458:0:0:0,-4.21442,-41.532	0/0:9:9,0:9:297:0:0:0,-2.70927,-27.0502	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/0:178:178,0:178:6202:0:0:0,-53.5833,-558.296	0/1:128:102,26:102:3428:26:932:-45.667,0,-270.207	0/0:28:28,0:28:969:0:0:0,-8.42884,-87.5196	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:193:145,48:145:4888:48:1708:-95.907,0,-381.995	0/1:23:9,14:9:312:14:504:-38.7744,0,-21.4917	0/1:142:93,49:93:3236:49:1752:-115.218,0,-248.723	0/1:61:32,29:32:1109:29:1044:-75.912,0,-81.7519	0/0:70:70,0:70:2452:0:0:0,-21.0721,-220.937	0/0:139:139,0:139:4678:0:0:0,-41.8432,-421.205	0/0:205:205,0:205:6947:0:0:0,-61.7111,-625.33	0/1:254:191,63:191:6474:63:2260:-127.201,0,-506.315	0/0:110:110,0:110:3732:0:0:0,-33.1133,-336.094	0/0:175:173,2:173:5834:2:72:0,-45.8435,-518.364	0/0:70:70,0:70:2319:0:0:0,-21.0721,-208.962	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/1:112:80,32:80:2646:32:1143:-69.464,0,-204.674	0/0:119:119,0:119:4044:0:0:0,-35.8226,-364.163	.:.:.:.:.:.:.:.	0/0:268:268,0:268:8939:0:0:0,-80.676,-804.555	0/1:56:48,8:48:1581:8:288:-9.40973,0,-125.711	0/0:11:11,0:11:372:0:0:0,-3.31133,-33.8066	0/1:16:11,5:11:369:5:180:-11.7356,0,-28.7161	0/1:112:87,25:87:2937:25:896:-47.245,0,-230.853	0/1:65:30,35:30:1001:35:1256:-93.7783,0,-70.8265	0/0:8:8,0:8:235:0:0:0,-2.40824,-21.4376	0/1:422:197,225:197:6658:225:8025:-595.238,0,-472.299	0/0:340:340,0:340:11439:0:0:0,-102.35,-1029.47	0/0:103:103,0:103:3526:0:0:0,-31.0061,-317.553	0/0:141:141,0:141:4545:0:0:0,-42.4452,-409.235	0/1:228:157,71:157:5291:71:2520:-158.418,0,-407.719	0/0:306:305,1:305:10519:1:36:0,-88.5169,-943.077	0/0:17:17,0:17:588:0:0:0,-5.11751,-53.245	0/0:81:81,0:81:2600:0:0:0,-24.3834,-234.245	0/0:31:31,0:31:1088:0:0:0,-9.33193,-98.2292	0/0:33:32,0:32:1096:0:0:0,-9.63296,-98.5865	0/1:123:84,39:84:2780:39:1396:-88.9124,0,-213.415	0/0:140:140,0:140:4727:0:0:0,-42.1442,-425.609	0/0:244:244,0:244:8051:0:0:0,-73.4513,-724.666	0/0:337:337,0:337:10965:0:0:0,-101.447,-986.843	0/0:105:105,0:105:3604:0:0:0,-31.6081,-324.573	0/0:175:175,0:175:5986:0:0:0,-52.6802,-538.872	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:171:116,55:116:3811:55:1976:-126.639,0,-291.725	0/0:203:203,0:203:6972:0:0:0,-61.1091,-627.563	0/1:327:220,107:220:7070:107:3822:-245.738,0,-537.981	0/0:46:46,0:46:1594:0:0:0,-13.8474,-143.745	0/0:56:56,0:56:1899:0:0:0,-16.8577,-171.181	0/1:48:26,22:26:916:22:788:-56.7954,0,-68.307	0/1:121:73,48:73:2474:48:1712:-117.941,0,-186.485	0/0:27:27,0:27:952:0:0:0,-8.12781,-85.9952	0/1:60:42,18:42:1457:18:648:-40.5901,0,-113.361	0/1:50:26,24:26:901:24:860:-62.6703,0,-66.3507	0/1:7:4,3:4:136:3:104:-7.5956,0,-10.4683	0/1:30:17,13:17:596:13:468:-33.4287,0,-44.9369	0/1:52:16,36:16:519:36:1288:-100.57,0,-31.3632	0/0:238:237,1:237:8032:1:36:0,-68.0469,-719.345	0/0:60:60,0:60:2088:0:0:0,-18.0618,-188.192
chr10	1590039	.	T	C	116291	PASS	AB=0.514833;ABP=10.2898;AC=137;AF=0.736559;AN=186;AO=5547;CIGAR=1X;DP=7407;DPB=7407;DPRA=0;EPP=12004.8;EPPR=4020.25;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.6495;MQMR=59.62;NS=93;NUMALT=1;ODDS=4.21834;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198246;QR=66705;RO=1858;RPL=5547;RPP=12048.2;RPPR=4037.61;RPR=0;RUN=1;SAF=5;SAP=12004.8;SAR=5542;SRF=2;SRP=4020.25;SRR=1856;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:25,47:25:900:47:1680:-129.638,0,-59.6407	1/1:74:0,74:0:0:74:2640:-237.237,-22.2762,0	0/1:181:91,90:91:3264:90:3215:-235.047,0,-238.765	0/1:180:97,83:97:3488:83:2960:-212.432,0,-259.941	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:36:21,15:21:756:15:540:-38.0985,0,-57.5239	0/1:64:24,40:24:860:40:1425:-109.276,0,-58.4559	0/1:104:52,52:52:1856:52:1872:-137.41,0,-136	0/1:146:71,75:71:2556:75:2665:-195.895,0,-186.323	0/1:75:29,46:29:1044:46:1615:-122.889,0,-71.6911	0/1:55:33,22:33:1184:22:792:-55.049,0,-90.3101	0/1:79:43,36:43:1544:36:1283:-91.9879,0,-115.387	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	1/1:56:0,56:0:0:56:2012:-181.182,-16.8577,0	1/1:59:0,59:0:0:59:2120:-191.065,-17.7608,0	1/1:66:0,66:0:0:66:2372:-213.713,-19.868,0	0/1:29:17,12:17:612:12:432:-30.4913,0,-46.6836	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:26:10,16:10:360:16:572:-43.9795,0,-24.9175	0/1:144:62,82:62:2228:82:2929:-220.489,0,-157.416	0/1:152:64,88:64:2304:88:3143:-237.339,0,-161.856	0/1:63:48,15:48:1716:15:540:-29.9708,0,-135.733	1/1:138:1,137:1:36:137:4920:-439.349,-37.9439,0	0/1:76:9,67:9:324:67:2379:-191.477,0,-6.51441	0/1:107:41,66:41:1472:66:2368:-181.168,0,-100.566	1/1:142:0,142:0:0:142:5050:-454.646,-42.7463,0	1/1:325:0,325:0:0:325:11626:-1045.62,-97.8348,0	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1183	0/1:233:105,128:105:3768:128:4579:-342.134,0,-269.178	0/1:76:46,30:46:1648:30:1063:-72.9397,0,-125.726	1/1:161:2,159:2:72:159:5692:-505.535,-41.6295,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:24:9,15:9:324:15:536:-41.3501,0,-22.2811	1/1:7:0,7:0:0:7:238:-21.7493,-2.10721,0	1/1:22:0,22:0:0:22:788:-71.2386,-6.62266,0	1/1:36:0,36:0:0:36:1272:-114.338,-10.8371,0	1/1:116:0,116:0:0:116:4146:-373.12,-34.9195,0	0/1:108:56,52:56:2012:52:1864:-135.522,0,-148.799	0/1:37:17,20:17:608:20:720:-53.9907,0,-43.8689	.:.:.:.:.:.:.:.	0/1:98:51,47:51:1821:47:1665:-120.627,0,-134.651	0/1:26:13,13:13:468:13:443:-32.3393,0,-34.6266	0/1:130:56,74:56:2012:74:2630:-197.693,0,-142.136	0/1:35:19,16:19:684:16:568:-40.9143,0,-51.3543	1/1:45:0,45:0:0:45:1616:-145.683,-13.5464,0	1/1:86:0,86:0:0:86:3068:-276.344,-25.8886,0	1/1:106:0,106:0:0:106:3789:-341.103,-31.9092,0	0/1:111:60,51:60:2144:51:1823:-130.562,0,-159.776	1/1:63:0,63:0:0:63:2260:-203.659,-18.9649,0	1/1:110:0,109:0:0:109:3885:-349.399,-32.8123,0	1/1:77:0,77:0:0:77:2745:-247.29,-23.1793,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:128:73,55:73:2624:55:1976:-139.526,0,-197.858	1/1:57:0,57:0:0:57:2052:-184.947,-17.1587,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:126:0,126:0:0:126:4512:-406.06,-37.9298,0	0/1:55:39,16:39:1404:16:572:-35.2521,0,-110.028	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0687	0/1:97:45,52:45:1616:52:1863:-138.749,0,-116.474	0/1:66:32,34:32:1152:34:1216:-89.8724,0,-84.1222	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:86:41,45:41:1476:45:1608:-119.121,0,-107.247	1/1:122:1,121:1:36:121:4323:-385.344,-33.1274,0	1/1:67:0,67:0:0:67:2395:-215.737,-20.169,0	1/1:72:0,72:0:0:72:2559:-230.556,-21.6742,0	0/1:125:52,73:52:1864:73:2603:-196.86,0,-130.305	1/1:183:2,181:2:72:181:6476:-575.828,-48.2518,0	1/1:36:0,35:0:0:35:1256:-112.975,-10.5361,0	1/1:49:0,49:0:0:49:1755:-158.215,-14.7505,0	1/1:40:2,38:2:72:38:1368:-116.631,-5.25168,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:95:44,51:44:1580:51:1817:-135.186,0,-113.881	1/1:73:0,73:0:0:73:2624:-236.39,-21.9752,0	1/1:219:0,219:0:0:219:7819:-703.675,-65.9256,0	1/1:145:1,144:1:36:144:5148:-459.559,-40.0511,0	1/1:71:1,70:1:36:70:2500:-221.653,-17.7749,0	1/1:90:0,90:0:0:90:3215:-289.568,-27.0927,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.149	1/1:66:0,66:0:0:66:2368:-213.36,-19.868,0	1/1:99:0,99:0:0:99:3543:-318.895,-29.802,0	0/1:197:101,96:101:3628:96:3440:-250.417,0,-267.093	1/1:31:0,31:0:0:31:1094:-98.7594,-9.33193,0	1/1:48:0,48:0:0:48:1724:-155.442,-14.4494,0	0/1:45:19,26:19:684:26:932:-70.6231,0,-48.344	0/1:67:41,26:41:1468:26:936:-64.3889,0,-112.245	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:49:20,29:20:716:29:1044:-79.521,0,-49.9977	0/1:62:23,39:23:828:39:1385:-105.945,0,-56.1518	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	0/1:109:58,51:58:2084:51:1815:-130.807,0,-155.014	0/1:46:26,20:26:932:20:716:-50.9188,0,-70.3499	1/1:117:0,117:0:0:117:4173:-375.695,-35.2205,0	1/1:79:0,79:0:0:79:2819:-253.873,-23.7814,0
chr10	1590054	.	G	A	30389.1	PASS	AB=0.488335;ABP=7.41788;AC=48;AF=0.258065;AN=186;AO=1834;CIGAR=1X;DP=7422;DPB=7422;DPRA=1.07795;EPP=3976.81;EPPR=12093.8;GTI=0;LEN=1;MEANALT=1;MQM=59.7045;MQMR=59.616;NS=93;NUMALT=1;ODDS=3.56924;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65634;QR=199978;RO=5588;RPL=1834;RPP=3985.49;RPPR=12137.2;RPR=0;RUN=1;SAF=1;SAP=3976.81;SAR=1833;SRF=5;SRP=12093.8;SRR=5583;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:44,24:44:1572:24:864:-57.6063,0,-121.123	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.444	0/1:179:90,89:90:3224:89:3177:-232.184,0,-236.41	0/1:181:83,98:83:2976:98:3503:-260.99,0,-213.569	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:36:15,21:15:540:21:752:-57.1667,0,-38.0985	0/1:62:40,22:40:1421:22:777:-51.5865,0,-109.515	0/1:98:51,47:51:1832:47:1684:-122.34,0,-135.618	0/1:148:79,69:79:2824:69:2461:-177.181,0,-209.709	0/1:73:45,28:45:1612:28:1000:-68.3371,0,-123.235	0/1:57:22,35:22:784:35:1256:-96.185,0,-53.6681	0/1:77:35,42:35:1256:42:1496:-111.67,0,-90.1626	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.291	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.944	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.994	0/1:31:14,17:14:504:17:604:-45.3587,0,-36.3662	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/1:25:15,10:15:532:10:360:-25.2186,0,-40.687	0/1:143:82,61:82:2936:61:2188:-154.131,0,-221.386	0/1:152:88,64:88:3148:64:2296:-161.136,0,-237.787	0/1:66:18,48:18:640:48:1724:-135.573,0,-38.0379	0/0:138:137,1:137:4908:1:36:0,-37.9439,-438.082	0/0:78:73,5:73:2608:5:180:0,-6.92827,-218.295	0/1:104:65,39:65:2324:39:1400:-94.9921,0,-178.113	0/0:143:143,0:143:5116:0:0:0,-43.0473,-460.089	0/0:325:325,0:325:11640:0:0:0,-97.8347,-1046.87	0/1:24:13,11:13:468:11:387:-27.9378,0,-35.2349	0/1:233:130,103:130:4656:103:3658:-259.282,0,-349.061	0/1:75:28,47:28:1004:47:1688:-129.621,0,-67.1593	0/0:165:164,1:164:5852:1:36:0,-46.0717,-523.161	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:23:14,9:14:500:9:320:-22.2187,0,-38.4125	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4239	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2423	0/0:37:37,0:37:1312:0:0:0,-11.1381,-116.845	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.632	0/1:110:52,58:52:1868:58:2084:-154.697,0,-135.257	0/1:38:23,15:23:816:15:532:-36.7739,0,-62.2776	.:.:.:.:.:.:.:.	0/1:99:48,51:48:1712:51:1813:-133.63,0,-124.553	0/1:26:13,13:13:468:13:468:-34.6266,0,-34.4709	0/1:128:74,54:74:2652:54:1932:-135.563,0,-200.287	0/1:38:17,21:17:608:21:744:-55.8446,0,-43.6123	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.459	0/0:86:86,0:86:3088:0:0:0,-25.8886,-277.985	0/0:108:108,0:108:3860:0:0:0,-32.5112,-347.449	0/1:112:53,59:53:1904:59:2104:-155.877,0,-137.549	0/0:63:63,0:63:2236:0:0:0,-18.9649,-201.446	0/0:110:110,0:110:3936:0:0:0,-33.1133,-354.345	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.623	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:128:56,72:56:2008:72:2584:-194.259,0,-141.76	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.107	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:126:126,0:126:4528:0:0:0,-37.9298,-407.496	0/1:55:16,39:16:576:39:1392:-108.988,0,-35.6137	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:11:1,10:1:36:10:360:-29.4318,0,-0.286945	0/1:96:52,44:52:1856:44:1580:-113.537,0,-138.421	0/1:65:33,32:33:1172:32:1152:-84.4232,0,-86.2144	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:84:43,41:43:1548:41:1476:-107.849,0,-114.326	0/0:124:123,1:123:4400:1:36:0,-33.7294,-392.092	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.7	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.488	0/1:124:74,50:74:2644:50:1800:-124.848,0,-200.828	0/0:182:180,2:180:6472:2:72:0,-47.9507,-575.282	0/0:36:34,2:34:1220:2:72:0,-4.0074,-103.27	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.782	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.295	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:98:54,44:54:1936:44:1584:-113.338,0,-144.933	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.958	0/0:223:223,0:223:7985:0:0:0,-67.1297,-718.504	0/0:142:142,0:142:5092:0:0:0,-42.7463,-458.187	0/0:71:70,1:70:2500:1:36:0,-17.7749,-221.653	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.257	0/1:17:9,8:9:320:8:288:-21.149,0,-24.0248	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.986	0/0:100:100,0:100:3576:0:0:0,-30.103,-321.869	0/1:200:100,100:100:3580:100:3575:-261.43,0,-262.195	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.56	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.251	0/1:45:26,19:26:928:19:680:-47.9828,0,-70.2919	0/1:68:26,42:26:932:42:1508:-115.541,0,-63.7273	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:50:30,20:30:1071:20:720:-50.0578,0,-81.6497	0/1:62:39,23:39:1396:23:815:-54.9785,0,-106.832	0/1:38:17,21:17:612:21:756:-56.9281,0,-43.9743	0/1:110:52,58:52:1847:58:2076:-153.994,0,-133.385	0/1:44:18,26:18:640:26:936:-71.3126,0,-44.6824	0/0:118:118,0:118:4220:0:0:0,-35.5215,-379.882	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.31
chr10	1590114	.	GGA	CGT,GGT	541653	PASS	AB=0.449467,0.545567;ABP=306.746,249.985;AC=125,63;AF=0.664894,0.335106;AN=188;AO=13237,7748;CIGAR=1X1M1X,2M1X;DP=21079;DPB=21110.7;DPRA=0,1.65583;EPP=28746.8,16827.6;EPPR=7.35324;GTI=2;LEN=3,1;MEANALT=2.79787,2.8172;MQM=51.9961,56.6826;MQMR=56;NS=94;NUMALT=2;ODDS=1.29082;PAIRED=0,0;PAIREDR=0;PAO=58,18.5;PQA=1980,0;PQR=0;PRO=18.5;QA=460723,274136;QR=56;RO=2;RPL=5957,4418;RPP=290.144,334.769;RPPR=3.0103;RPR=7280,3330;RUN=1,1;SAF=5957,4418;SAP=290.144,334.769;SAR=7280,3330;SRF=1;SRP=3.0103;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:163:0,61,99:0:0:61,99:2111,3496:-455.216,-284.554,-266.191,-170.669,0,-140.868	1/1:288:0,284,4:0:0:284,4:9951,144:-883.608,-85.4925,0,-871.867,-73.747,-870.663	1/2:322:0,132,188:0:0:132,188:4605,6606:-908.279,-537.244,-497.508,-371.024,0,-314.431	1/2:468:0,151,316:0:0:151,316:5249,11132:-1325.97,-904.465,-859.01,-421.547,0,-326.422	1/2:193:0,58,134:0:0:58,134:2061,4751:-551.088,-386.387,-368.927,-164.771,0,-124.433	1/2:177:0,59,118:0:0:59,118:2054,4198:-505.965,-341.306,-323.545,-164.648,0,-129.126	1/2:341:0,142,198:0:0:142,198:4977,7047:-973.354,-573.971,-531.224,-399.414,0,-339.81	1/2:404:0,154,248:0:0:154,248:5350,8840:-1148.49,-719.372,-673.014,-429.212,0,-354.556	1/2:394:0,159,235:0:0:159,235:5457,8367:-1120.36,-681.695,-633.831,-439.01,0,-368.268	1/2:257:0,79,177:0:0:79,177:2740,6275:-729.161,-510.661,-486.879,-218.495,0,-165.213	1/2:73:0,24,49:0:0:24,49:806,1714:-203.412,-139.33,-132.105,-64.4183,0,-49.6678	1/2:192:0,96,95:0:0:96,95:3360,3315:-541.367,-269.359,-240.46,-272.086,0,-243.488	1/1:136:0,136,0:0:0:136,0:4709,0:-421.803,-40.9401,0,-421.803,-40.9401,-421.803	1/2:96:0,87,9:0:0:87,9:3051,324:-271.734,-26.4617,-0.272097,-245.351,0,-242.642	1/2:151:0,136,15:0:0:136,15:4720,523:-422.453,-42.814,-1.8739,-379.987,0,-375.472	1/1:87:0,84,3:0:0:84,3:2898,108:-259.423,-25.2865,0,-250.642,-16.5065,-249.739	1/2:106:0,33,72:0:0:33,72:1124,2580:-299.88,-209.931,-199.997,-89.9327,0,-68.2585	1/1:81:0,79,2:0:0:79,2:2773,72:-245.23,-23.7814,0,-239.36,-17.8989,-238.758	1/2:65:0,20,44:0:0:20,44:691,1520:-179.409,-123.414,-117.393,-55.9906,0,-42.7452	1/2:426:0,172,254:0:0:172,254:5999,9004:-1211.8,-733.36,-681.583,-478.791,0,-402.329	1/2:362:0,126,234:0:0:126,234:4409,8264:-1024.55,-671.29,-633.361,-353.315,0,-282.874	1/2:231:0,77,150:0:0:77,150:2650,5302:-645.308,-431.485,-408.306,-213.812,0,-168.657	1/1:289:0,273,14:0:0:273,14:9466,496:-839.861,-82.1812,0,-799.65,-41.9456,-795.436	1/2:272:0,240,29:0:0:240,29:8408,1040:-760.282,-84.7859,-12.5387,-675.536,0,-666.806	1/2:263:0,122,141:0:0:122,141:4223,4947:-743.704,-402.214,-365.489,-341.836,0,-299.391	1/1:633:0,627,3:0:0:627,3:21736,108:-1938.28,-188.746,0,-1929.47,-179.918,-1928.56	1/2:548:0,448,99:0:0:448,99:15602,3503:-1540.28,-284.361,-149.499,-1255.99,0,-1226.18	1/2:71:0,24,46:0:0:24,46:829,1610:-197.727,-130.74,-123.515,-66.9737,0,-53.1263	1/2:676:0,259,412:0:0:259,412:9029,14528:-1907.19,-1181.44,-1103.47,-725.788,0,-601.764	1/2:366:0,165,201:0:0:165,201:5785,7055:-1032.86,-571.986,-522.316,-460.866,0,-400.359	1/1:286:0,260,24:0:0:260,24:9102,856:-805.398,-78.2678,0,-736.097,-8.93336,-728.872	1/1:34:0,32,2:0:0:32,2:1122,68:-99.5319,-9.63296,0,-94.0165,-3.77731,-93.4144	1/2:76:0,21,54:0:0:21,54:754,1894:-214.966,-153.949,-147.627,-61.155,0,-44.8994	1/2:89:0,29,60:0:0:29,60:989,2127:-252.693,-173.022,-164.292,-80.0145,0,-61.9527	1/2:62:0,17,45:0:0:17,45:600,1591:-177.074,-129.862,-124.745,-47.5567,0,-34.0104	1/2:123:0,110,13:0:0:110,13:3777,455:-343.563,-37.0364,-3.92309,-306.554,0,-302.641	1/1:343:0,333,7:0:0:333,7:11393,248:-1016.84,-100.243,0,-996.72,-80.1091,-994.613	1/2:321:0,128,189:0:0:128,189:4460,6711:-902.419,-545.9,-507.368,-356.533,0,-299.638	1/2:100:0,36,64:0:0:36,64:1219,2263:-282.317,-184.152,-173.315,-98.5078,0,-79.2419	1/2:52:0,8,44:0:0:8,44:274,1568:-149.905,-127.771,-125.363,-22.4769,0,-9.23154	1/2:315:0,138,177:0:0:138,177:4819,6275:-898.085,-510.72,-469.178,-387.395,0,-334.113	1/2:47:0,23,24:0:0:23,24:800,847:-133.914,-69.2222,-62.2985,-65.0406,0,-57.8158	1/2:498:1,188,306:1:28:188,306:6491,10842:-1402.15,-879.271,-824.894,-520.973,0,-431.075	1/2:176:0,67,109:0:0:67,109:2329,3858:-500.655,-314.216,-294.047,-186.786,0,-153.973	1/1:101:0,100,1:0:0:100,1:3488,36:-311.461,-30.103,0,-308.523,-26.8058,-308.222	1/1:320:0,315,3:0:0:315,3:10986,108:-983.028,-94.8245,0,-974.216,-85.9787,-973.312	1/1:221:0,205,16:0:0:205,16:7090,568:-633.238,-61.7112,0,-586.979,-15.0981,-582.163	1/2:440:0,183,254:0:0:183,254:6399,9049:-1249.07,-735.968,-680.879,-513.128,0,-436.667	1/1:226:0,216,10:0:0:216,10:7496,352:-665.584,-65.0225,0,-636.982,-36.07,-633.972	1/1:253:0,246,5:0:0:246,5:8621,180:-761.528,-74.0534,0,-746.868,-59.3653,-745.363	1/1:267:0,251,15:0:0:251,15:8815,540:-784.775,-75.5585,0,-740.869,-31.6476,-736.353	1/2:36:0,6,30:0:0:6,30:216,1065:-104.184,-86.9899,-85.1837,-17.5463,0,-8.51538	1/2:308:1,130,174:1:28:130,174:4503,6185:-862.449,-501.008,-464.093,-359.587,0,-309.426	1/1:187:0,179,7:0:0:1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chr10	1590156	.	T	A	144886	PASS	AB=0.477833;ABP=32.0835;AC=125;AF=0.664894;AN=188;AO=7288;CIGAR=1X;DP=10991;DPB=10991;DPRA=7.37567;EPP=15828.7;EPPR=8039.63;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.662;MQMR=59.9062;NS=94;NUMALT=1;ODDS=0.483552;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=260935;QR=132351;RO=3701;RPL=7288;RPP=15828.7;RPPR=8039.63;RPR=0;RUN=1;SAF=0;SAP=15828.7;SAR=7288;SRF=0;SRP=8039.63;SRR=3701;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:116:67,49:67:2378:49:1754:-123.086,0,-179.347	1/1:94:0,94:0:0:94:3360:-302.587,-28.2968,0	0/1:167:94,73:94:3376:73:2605:-183.784,0,-253.782	0/1:266:183,83:183:6542:83:2969:-187.352,0,-508.779	0/1:85:51,34:51:1836:34:1224:-84.8713,0,-139.933	0/1:32:16,16:16:576:16:576:-42.5338,0,-42.5416	0/1:137:63,74:63:2245:74:2626:-195.339,0,-161.071	0/1:137:78,59:78:2789:59:2124:-150.15,0,-210.008	0/1:239:120,119:120:4282:119:4264:-311.188,0,-313.609	0/1:98:67,31:67:2374:31:1116:-71.2415,0,-184.412	0/1:35:20,15:20:720:15:540:-38.3959,0,-54.5927	0/1:141:64,77:64:2296:77:2768:-206.883,0,-164.456	1/1:106:0,106:0:0:106:3812:-343.051,-31.9092,0	1/1:49:3,46:3:108:46:1652:-138.839,-4.6753,0	0/1:98:10,88:10:360:88:3149:-254.085,0,-3.24336	1/1:62:0,62:0:0:62:2217:-199.788,-18.6639,0	0/1:29:11,18:11:392:18:644:-49.5607,0,-26.8902	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:40:24,16:24:864:16:576:-40.0978,0,-66.0332	0/1:193:118,75:118:4225:75:2696:-184.78,0,-322.329	0/1:174:126,48:126:4519:48:1728:-103.417,0,-354.48	0/1:126:74,52:74:2641:52:1864:-130.108,0,-200.005	1/1:171:4,167:4:144:167:5968:-523.191,-38.1649,0	0/1:129:18,111:18:648:111:3984:-319.879,0,-19.819	0/1:167:72,95:72:2584:95:3404:-256.283,0,-182.532	1/1:363:1,362:1:36:362:12967:-1162.58,-105.676,0	0/1:334:54,280:54:1932:280:10013:-800.538,0,-73.6034	0/1:34:16,18:16:576:18:648:-48.3992,0,-41.9353	0/1:308:189,119:189:6766:119:4253:-289.737,0,-516.274	0/1:116:76,40:76:2701:40:1415:-92.4874,0,-208.409	1/1:115:4,111:4:144:111:3980:-345.029,-21.3048,0	0/1:20:4,16:4:144:16:576:-46.1498,0,-7.29302	0/1:58:43,15:43:1548:15:540:-31.4722,0,-122.041	0/1:55:37,18:37:1309:18:648:-42.087,0,-101.551	0/1:40:31,9:31:1101:9:320:-17.1012,0,-87.3313	1/1:117:8,109:8:288:109:3867:-321.876,-8.9531,0	1/1:211:2,209:2:72:209:7499:-668.066,-56.6806,0	0/1:124:71,53:71:2525:53:1883:-132.25,0,-190.173	0/1:55:31,24:31:1116:24:860:-60.9488,0,-84.195	0/1:33:26,7:26:932:7:244:-12.3077,0,-74.2603	0/1:165:84,81:84:3012:81:2893:-210.925,0,-221.641	0/1:27:9,18:9:320:18:644:-50.1582,0,-21.0145	0/1:284:164,120:164:5842:120:4304:-301.877,0,-440.399	0/1:83:43,40:43:1548:40:1432:-104.178,0,-114.625	1/1:72:1,71:1:36:71:2546:-225.784,-18.0759,0	1/1:231:4,227:4:144:227:8140:-719.274,-56.2243,0	1/1:135:12,123:12:432:123:4428:-359.415,-1.4425,0	0/1:174:81,93:81:2867:93:3340:-248.119,0,-205.884	1/1:127:6,121:6:216:121:4318:-368.974,-18.4403,0	1/1:93:3,90:3:108:90:3221:-280.022,-17.9206,0	1/1:144:6,138:6:216:138:4949:-425.762,-23.5587,0	0/0:13:12,1:12:432:1:36:0,-0.315115,-35.6206	0/1:160:81,79:81:2882:79:2820:-205.87,0,-211.441	1/1:105:5,100:5:180:100:3581:-305.444,-15.0561,0	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.772	1/1:134:2,132:2:72:132:4710:-417.008,-33.511,0	0/1:79:43,36:43:1521:36:1281:-91.8017,0,-113.4	0/1:10:2,8:2:68:8:284:-22.8931,0,-3.44741	0/1:24:8,16:8:288:16:572:-44.5887,0,-19.0427	0/1:132:70,62:70:2505:62:2188:-157.426,0,-185.96	0/1:88:39,49:39:1389:49:1764:-132.553,0,-98.8163	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.505	0/1:143:71,72:71:2533:72:2592:-190.424,0,-185.172	1/1:191:4,187:4:144:187:6641:-584.322,-44.1831,0	1/1:117:3,114:3:108:114:4083:-357.566,-25.1453,0	0/1:99:14,84:14:504:84:3024:-242.515,0,-15.8327	0/1:240:140,100:140:5002:100:3554:-247.693,0,-378.077	1/1:203:2,201:2:72:201:7163:-637.577,-54.2724,0	0/1:33:3,30:3:108:30:1076:-87.0825,0,-0.14118	1/1:41:1,40:1:36:40:1436:-125.915,-8.74396,0	1/1:76:2,74:2:64:74:2648:-232.485,-16.7996,0	0/1:37:7,30:7:252:30:1080:-86.3742,0,-11.8908	0/1:172:111,61:111:3992:61:2192:-145.765,0,-307.675	1/1:100:6,94:6:216:94:3376:-284.205,-10.3125,0	1/1:181:6,175:6:216:175:6251:-542.53,-34.7006,0	1/1:135:7,128:7:252:128:4589:-390.132,-17.6101,0	1/1:110:6,104:6:216:104:3719:-315.101,-13.3228,0	1/1:106:1,105:1:36:105:3753:-334.343,-28.3109,0	0/1:20:13,7:13:468:7:237:-15.6385,0,-36.439	1/1:103:6,97:6:216:97:3484:-293.952,-11.2156,0	0/1:121:17,104:17:612:104:3717:-298.13,0,-18.9806	0/1:469:320,149:320:11473:149:5335:-338.51,0,-891.235	1/1:70:2,67:2:72:67:2412:-210.492,-14.2942,0	1/1:94:1,93:1:36:93:3348:-297.918,-24.6985,0	0/1:66:36,30:36:1281:30:1080:-77.6453,0,-95.7233	0/1:185:90,95:90:3202:95:3408:-251.215,0,-232.71	0/1:22:2,20:2:72:20:720:-58.4979,0,-0.214062	0/1:77:46,31:46:1644:31:1116:-77.5642,0,-125.069	0/1:99:51,48:51:1836:48:1728:-125.986,0,-135.719	0/1:29:18,11:18:644:11:392:-26.8902,0,-49.5607	0/1:102:76,26:76:2728:26:932:-53.48,0,-215.056	0/1:80:59,21:59:2120:21:756:-44.2839,0,-166.986	1/1:128:6,122:6:216:122:4384:-374.916,-18.7413,0	1/1:130:3,127:3:108:127:4557:-400.176,-29.0587,0
chr10	1691281	.	A	G	107446	PASS	AB=0.479492;ABP=19.3985;AC=137;AF=0.744565;AN=184;AO=5225;CIGAR=1X;DP=7571;DPB=7571;DPRA=0;EPP=10995.6;EPPR=5000.02;GTI=4;LEN=1;MEANALT=1.01087;MQM=59.9969;MQMR=59.9881;NS=92;NUMALT=1;ODDS=0.31617;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185448;QR=83038;RO=2345;RPL=5183;RPP=10987.1;RPPR=5000.02;RPR=42;RUN=1;SAF=5224;SAP=11340.3;SAR=1;SRF=2345;SRP=5095.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:25,15:25:888:15:526:-35.6275,0,-68.1978	1/1:139:0,139:0:0:139:4953:-445.92,-41.8432,0	0/1:148:89,59:89:3163:59:2090:-143.817,0,-240.343	0/1:232:115,117:115:4088:117:4192:-307.622,0,-298.27	0/1:42:24,18:24:860:18:648:-46.0086,0,-65.0786	0/1:40:25,15:25:884:15:524:-35.4484,0,-67.8372	0/1:116:61,54:61:2146:54:1924:-138.459,0,-158.429	0/1:99:48,51:48:1701:51:1804:-132.837,0,-123.572	0/1:84:53,31:53:1888:31:1104:-74.3841,0,-144.912	0/1:100:62,38:62:2208:38:1364:-92.9577,0,-168.882	0/1:27:9,18:9:320:18:640:-49.8015,0,-21.0145	0/1:69:31,38:31:1100:38:1347:-100.758,0,-78.5392	1/1:53:0,53:0:0:53:1879:-169.388,-15.9546,0	1/1:33:0,33:0:0:33:1152:-103.983,-9.93399,0	1/1:56:0,56:0:0:56:1980:-178.472,-16.8577,0	1/1:43:0,43:0:0:43:1535:-138.443,-12.9443,0	0/1:15:5,10:5:176:10:360:-28.2289,0,-11.6696	1/1:25:0,25:0:0:25:881:-79.6059,-7.52575,0	0/1:32:16,16:16:560:16:550:-40.1904,0,-41.0958	0/1:169:92,77:92:3236:77:2759:-197.677,0,-240.592	0/1:115:56,59:56:1995:59:2105:-155.1,0,-144.715	0/1:151:94,57:94:3297:57:2052:-139.496,0,-251.495	1/1:122:0,122:0:0:122:4335:-390.328,-36.7257,0	1/1:63:3,60:3:108:60:2136:-182.433,-8.88972,0	0/1:67:38,29:38:1349:29:1040:-73.7454,0,-101.539	1/1:213:0,213:0:0:213:7551:-679.634,-64.1194,0	1/1:151:0,151:0:0:151:5376:-483.975,-45.4555,0	0/1:18:8,10:8:288:10:351:-26.5081,0,-20.8489	0/1:280:122,158:122:4316:158:5619:-421.543,0,-304.334	0/1:610:304,306:304:10778:306:10858:-793.5,0,-786.309	1/1:91:0,91:0:0:91:3245:-292.271,-27.3937,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:126:0,126:0:0:126:4451:-400.764,-37.9298,0	0/1:155:77,78:77:2709:78:2770:-202.882,0,-197.395	0/1:47:22,25:22:767:25:860:-63.5632,0,-55.201	.:.:.:.:.:.:.:.	0/1:136:69,67:69:2455:67:2400:-175.317,0,-180.264	0/1:35:16,19:16:557:19:663:-49.4574,0,-39.9195	0/1:121:66,55:66:2298:55:1956:-139.891,0,-170.655	0/1:25:15,10:15:536:10:360:-25.2186,0,-41.0491	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:74:0,74:0:0:74:2644:-238.207,-22.2762,0	1/1:91:0,91:0:0:91:3222:-290.202,-27.3937,0	0/1:133:67,66:67:2351:66:2340:-170.821,0,-171.813	1/1:59:0,59:0:0:59:2090:-188.369,-17.7608,0	1/1:69:0,69:0:0:69:2454:-221.114,-20.7711,0	1/1:130:0,130:0:0:130:4624:-416.324,-39.1339,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:137:69,68:69:2443:68:2407:-175.645,0,-178.884	1/1:69:0,69:0:0:69:2459:-221.564,-20.7711,0	0/1:21:15,6:15:536:6:216:-13.4665,0,-42.2532	1/1:100:0,100:0:0:100:3550:-319.71,-30.103,0	0/1:69:37,32:37:1307:32:1127:-80.9664,0,-97.1597	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	0/1:64:22,42:22:769:42:1504:-116.389,0,-50.2627	0/1:57:29,28:29:1040:28:985:-71.8028,0,-76.7557	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:155:96,59:96:3380:59:2104:-142.97,0,-257.758	1/1:114:0,114:0:0:114:4045:-364.239,-34.3174,0	1/1:45:0,45:0:0:45:1590:-143.389,-13.5464,0	1/1:71:1,70:1:36:70:2490:-220.754,-17.7749,0	0/1:157:76,81:76:2688:81:2892:-213.255,0,-194.905	1/1:170:6,164:6:212:164:5820:-504.491,-31.7503,0	1/1:21:0,21:0:0:21:737:-66.6506,-6.32163,0	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:131:72,59:72:2557:59:2094:-149.294,0,-190.944	1/1:48:0,48:0:0:48:1707:-153.914,-14.4494,0	1/1:91:0,91:0:0:91:3203:-288.494,-27.3937,0	1/1:130:0,130:0:0:130:4640:-417.764,-39.1339,0	1/1:46:0,46:0:0:46:1627:-146.71,-13.8474,0	1/1:82:0,82:0:0:82:2887:-260.063,-24.6845,0	1/1:6:0,6:0:0:6:204:-18.692,-1.80618,0	1/1:87:0,87:0:0:87:3060:-275.63,-26.1896,0	1/1:92:1,91:1:36:91:3238:-288.044,-24.0965,0	0/1:193:114,79:114:4049:79:2814:-195.401,0,-306.5	1/1:37:0,37:0:0:37:1305:-117.749,-11.1381,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	0/1:29:16,13:16:572:13:448:-31.918,0,-43.0836	0/1:90:53,37:53:1887:37:1308:-90.9288,0,-143.015	1/1:18:0,18:0:0:18:626:-56.6633,-5.41854,0	0/1:56:25,31:25:900:31:1072:-79.9274,0,-64.4633	0/1:46:19,27:19:680:27:959:-72.778,0,-47.6818	0/1:35:14,21:14:496:21:743:-56.6573,0,-34.4382	0/1:73:28,45:28:1000:45:1574:-119.974,0,-68.3402	0/1:35:20,15:20:716:15:540:-38.4005,0,-54.2317	1/1:63:0,63:0:0:63:2227:-200.694,-18.9649,0	1/1:73:0,73:0:0:73:2553:-230.02,-21.9752,0
chr10	1691375	.	A	G	23492.7	PASS	AB=0.464197;ABP=43.2825;AC=49;AF=0.260638;AN=188;AO=1686;CIGAR=1X;DP=6873;DPB=6873;DPRA=1.09661;EPP=3664.11;EPPR=11266.4;GTI=1;LEN=1;MEANALT=1;MQM=59.726;MQMR=59.9717;NS=94;NUMALT=1;ODDS=1.79659;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55891;QR=184993;RO=5187;RPL=0;RPP=3664.11;RPPR=11266.4;RPR=1686;RUN=1;SAF=0;SAP=3664.11;SAR=1686;SRF=0;SRP=11266.4;SRR=5187;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:20,13:20:708:13:401:-26.4549,0,-54.1116	0/0:64:63,1:63:2252:1:27:0,-16.5661,-200.243	0/1:76:37,39:37:1328:39:1284:-92.8496,0,-96.944	0/1:172:96,76:96:3456:76:2542:-177.237,0,-259.474	0/1:23:9,14:9:316:14:456:-34.4284,0,-21.8552	0/1:40:26,14:26:916:14:492:-32.5711,0,-70.7139	0/1:34:16,18:16:576:18:590:-43.1632,0,-41.94	0/1:153:77,76:77:2747:76:2561:-184.678,0,-201.415	0/1:41:23,18:23:816:18:600:-41.9648,0,-61.4195	0/1:94:41,53:41:1459:53:1812:-135.057,0,-103.308	0/1:31:23,8:23:820:8:245:-13.0171,0,-64.7906	0/1:53:31,22:31:1079:22:702:-47.5268,0,-81.4631	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:57:57,0:57:2023:0:0:0,-17.1587,-182.325	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:59:33,26:33:1172:26:837:-57.8675,0,-88.0267	0/0:60:59,1:59:2099:1:32:0,-14.8625,-185.98	0/1:35:22,13:22:760:13:432:-28.6582,0,-58.1798	0/1:110:54,56:54:1914:56:1881:-136.438,0,-139.423	0/1:146:70,76:70:2499:76:2612:-191.36,0,-181.212	0/1:74:24,50:24:855:50:1668:-128.118,0,-54.994	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/1:55:49,6:49:1760:6:194:-1.22091,0,-142.127	0/1:38:24,14:24:855:14:436:-28.1034,0,-65.831	0/0:291:291,0:291:10421:0:0:0,-87.5997,-937.807	0/0:128:127,1:127:4552:1:36:0,-34.9336,-406.229	0/1:26:17,9:17:604:9:284:-18.0394,0,-46.8638	0/1:150:81,69:81:2903:69:2292:-161.377,0,-216.35	0/1:65:41,24:41:1463:24:808:-53.4578,0,-112.398	0/0:122:122,0:122:4339:0:0:0,-36.7257,-390.679	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:11:4,7:4:144:7:227:-17.4371,0,-10.0023	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:180:180,0:180:6410:0:0:0,-54.1854,-576.961	0/1:202:89,113:89:3164:113:3721:-274.283,0,-224.176	0/1:52:24,28:24:860:28:878:-63.6571,0,-62.0683	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:95:49,46:49:1756:46:1566:-112.593,0,-129.726	0/1:20:10,10:10:356:10:330:-23.9987,0,-26.3606	0/1:113:59,54:59:2111:54:1789:-127.256,0,-156.242	0/1:37:18,19:18:635:19:642:-46.9585,0,-46.3389	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:76:76,0:76:2706:0:0:0,-22.8783,-243.783	0/1:167:98,69:98:3486:69:2316:-158.416,0,-263.68	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/0:126:126,0:126:4495:0:0:0,-37.9298,-404.623	0/0:106:106,0:106:3782:0:0:0,-31.9092,-340.579	0/1:10:6,4:6:216:4:136:-9.56524,0,-16.7802	0/1:87:32,55:32:1143:55:1849:-140.49,0,-76.9891	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/1:30:20,10:20:712:10:313:-19.4427,0,-55.3758	0/0:104:102,2:102:3613:2:63:0,-25.324,-319.391	0/1:56:30,26:30:1068:26:851:-60.0328,0,-79.5744	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:16:9,7:9:324:7:244:-17.4829,0,-24.6894	0/1:70:37,33:37:1315:33:1101:-78.3154,0,-97.5789	0/1:78:50,28:50:1783:28:945:-61.8737,0,-137.216	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:195:111,84:111:3953:84:2796:-192.982,0,-297.261	0/0:165:165,0:165:5902:0:0:0,-49.6699,-531.289	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:153:74,79:74:2648:79:2617:-189.147,0,-192.506	0/0:70:69,1:69:2451:1:32:0,-17.8728,-217.644	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.585	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0516	0/1:54:27,27:27:972:27:884:-63.5987,0,-71.5423	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:131:130,1:130:4635:1:36:0,-35.8367,-413.716	0/0:91:91,0:91:3243:0:0:0,-27.3937,-292.035	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.036	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.16	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:193:97,96:97:3428:96:3184:-228.655,0,-250.633	0/0:89:89,0:89:3151:0:0:0,-26.7917,-283.817	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:70:42,28:42:1496:28:892:-59.5015,0,-113.862	0/1:106:62,44:62:2189:44:1432:-97.2547,0,-165.366	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:67:42,25:42:1487:25:786:-50.8625,0,-113.955	0/1:40:27,13:27:952:13:413:-25.4355,0,-73.954	0/1:34:25,9:25:900:9:288:-15.9947,0,-71.086	0/1:87:49,38:49:1743:38:1256:-87.1376,0,-130.964	0/1:53:24,29:24:860:29:940:-68.943,0,-61.7672	0/0:60:60,0:60:2147:0:0:0,-18.0618,-193.497	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.849
chr10	1691390	.	A	G,T	146809	PASS	AB=0.517336,0.482391;ABP=12.5718,12.8753;AC=140,48;AF=0.744681,0.255319;AN=188;AO=5101,1773;CIGAR=1X,1X;DP=6876;DPB=6876;DPRA=0,1.16914;EPP=10880.8,3766.66;EPPR=7.35324;GTI=1;LEN=1,1;MEANALT=1.56383,2;MQM=59.9675,59.7332;MQMR=60;NS=94;NUMALT=2;ODDS=2.24904;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=181413,61748;QR=72;RO=2;RPL=23,10;RPP=10880.8,3766.66;RPPR=7.35324;RPR=5078,1763;RUN=1,1;SAF=0,0;SAP=11079.7,3853.03;SAR=5101,1773;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,20,15:0:0:20,15:720,532:-102.449,-43.6976,-37.677,-59.1082,0,-54.5927	1/1:62:0,61,1:0:0:61,1:2174,36:-195.565,-18.3628,0,-192.628,-15.0656,-192.327	1/2:83:0,38,45:0:0:38,45:1356,1533:-235.24,-124.688,-113.249,-110.901,0,-97.355	1/2:175:0,94,81:0:0:94,81:3355,2744:-496.316,-222.793,-194.497,-273.869,0,-249.486	1/2:21:0,9,12:0:0:9,12:324,432:-62.0456,-35.6088,-32.8996,-26.7966,0,-23.1842	1/2:42:0,26,16:0:0:26,16:913,556:-119.669,-45.5507,-37.7239,-74.4663,0,-69.6498	1/2:36:0,16,20:0:0:16,20:564,686:-101.955,-56.0289,-51.2125,-46.2738,0,-40.2532	1/2:150:1,75,74:1:36:75,74:2659,2588:-423.912,-207.588,-187.948,-213.68,0,-194.342	1/2:43:0,24,19:0:0:24,19:864,676:-125.939,-55.4384,-48.2136,-70.8578,0,-65.1383	1/2:96:0,40,56:0:0:40,56:1406,2004:-278.209,-163.77,-151.728,-114.793,0,-97.9352	1/2:32:0,23,9:0:0:23,9:819,324:-93.5457,-26.7966,-19.8729,-67.1079,0,-64.3986	1/2:50:0,29,21:0:0:29,21:1019,733:-142.91,-59.968,-51.2382,-83.2914,0,-76.9698	1/1:47:0,46,1:0:0:46,1:1639,36:-147.438,-13.8474,0,-144.501,-10.5501,-144.2	1/1:57:0,57,0:0:0:57,0:2016,0:-181.696,-17.1587,0,-181.696,-17.1587,-181.696	1/1:52:0,52,0:0:0:52,0:1857,0:-167.409,-15.6536,0,-167.409,-15.6536,-167.409	1/1:52:0,52,0:0:0:52,0:1829,0:-164.887,-15.6536,0,-164.887,-15.6536,-164.887	1/2:54:0,31,23:0:0:31,23:1112,778:-154.116,-63.4031,-54.0711,-91.0594,0,-84.1357	1/1:58:0,58,0:0:0:58,0:2040,0:-183.87,-17.4597,0,-183.87,-17.4597,-183.87	1/2:35:0,22,13:0:0:22,13:777,468:-101.813,-38.5429,-31.9202,-63.6277,0,-59.7143	1/2:115:0,52,63:0:0:52,63:1841,2199:-329.156,-179.192,-163.538,-150.316,0,-131.351	1/2:147:0,69,78:0:0:69,78:2468,2748:-425.312,-224.064,-203.293,-201.603,0,-178.123	1/2:79:0,24,55:0:0:24,55:839,1956:-228.002,-159.752,-152.528,-68.6012,0,-52.0446	1/1:64:0,64,0:0:0:64,0:2283,0:-205.731,-19.2659,0,-205.731,-19.2659,-205.731	1/2:58:0,49,9:0:0:49,9:1760,279:-166.317,-22.7012,-7.95068,-143.933,0,-141.224	1/2:36:0,23,13:0:0:23,13:806,456:-103.044,-37.4598,-30.5362,-65.9345,0,-62.0211	1/1:281:1,280,0:1:36:280,0:9965,0:-893.194,-80.9912,0,-893.495,-84.2884,-896.433	1/1:125:0,124,1:0:0:124,1:4403,36:-396.084,-37.3277,0,-393.147,-34.0305,-392.846	1/2:27:0,16,11:0:0:16,11:576,375:-77.775,-30.7651,-25.9486,-47.3585,0,-44.0472	1/2:146:0,79,67:0:0:79,67:2829,2309:-418.6,-187.884,-164.103,-231.066,0,-210.897	1/2:63:0,39,24:0:0:39,24:1386,833:-181.003,-68.0556,-56.3154,-113.297,0,-106.072	1/1:122:0,122,0:0:0:122,0:4335,0:-390.321,-36.7257,0,-390.321,-36.7257,-390.321	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/2:12:0,4,8:0:0:4,8:141,284:-34.9747,-23.4951,-22.291,-11.8328,0,-9.42455	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:178:0,178,0:0:0:178,0:6323,0:-568.973,-53.5833,0,-568.973,-53.5833,-568.973	1/2:207:0,88,119:0:0:88,119:3100,4184:-593.291,-340.906,-314.415,-252.737,0,-216.915	1/2:54:0,25,29:0:0:25,29:896,1001:-154.751,-81.6682,-74.1424,-73.4346,0,-64.7047	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:99:0,47,52:0:0:47,52:1668,1815:-283.683,-147.777,-133.629,-136.257,0,-120.604	1/2:23:0,10,13:0:0:10,13:360,434:-64.8496,-35.4641,-32.4538,-29.734,0,-25.8206	1/2:112:0,61,51:0:0:61,51:2158,1752:-318.369,-142.593,-124.23,-176.123,0,-160.771	1/2:35:0,17,18:0:0:17,18:597,640:-101.096,-52.5108,-47.3933,-48.9386,0,-43.5201	1/1:44:0,44,0:0:0:44,0:1563,0:-140.962,-13.2453,0,-140.962,-13.2453,-140.962	1/1:52:0,52,0:0:0:52,0:1838,0:-165.697,-15.6536,0,-165.697,-15.6536,-165.697	1/1:74:0,74,0:0:0:74,0:2627,0:-236.678,-22.2762,0,-236.678,-22.2762,-236.678	1/2:167:0,94,73:0:0:94,73:3369,2536:-481.255,-206.48,-178.183,-275.128,0,-253.153	1/1:97:0,97,0:0:0:97,0:3427,0:-308.645,-29.1999,0,-308.645,-29.1999,-308.645	1/1:123:0,123,0:0:0:123,0:4383,0:-394.548,-37.0267,0,-394.548,-37.0267,-394.548	1/1:109:0,109,0:0:0:109,0:3879,0:-349.304,-32.8123,0,-349.304,-32.8123,-349.304	1/2:11:0,6,5:0:0:6,5:216,180:-32.6714,-15.0469,-13.2407,-17.9843,0,-16.4792	1/2:91:0,31,60:0:0:31,60:1103,2101:-261.155,-171.261,-161.929,-90.2479,0,-72.1861	1/1:62:0,62,0:0:0:62,0:2216,0:-199.705,-18.6639,0,-199.705,-18.6639,-199.705	1/2:31:0,21,10:0:0:21,10:748,356:-90.3387,-29.3709,-23.0493,-61.3237,0,-58.3134	1/1:109:0,107,2:0:0:107,2:3813,68:-343.027,-32.2102,0,-337.511,-26.3546,-336.909	1/2:55:0,30,25:0:0:30,25:1076,847:-156.785,-69.0105,-59.97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chr10	1771781	.	G	A	84568.5	PASS	AB=0.335654;ABP=1115.03;AC=136;AF=0.723404;AN=188;AO=4340;CIGAR=1X;DP=7569;DPB=7569;DPRA=9.11957;EPP=9427.2;EPPR=7014.69;GTI=13;LEN=1;MEANALT=1;MQM=54.6346;MQMR=48.0604;NS=94;NUMALT=1;ODDS=0.317358;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155721;QR=115412;RO=3229;RPL=0;RPP=9427.2;RPPR=7014.69;RPR=4340;RUN=1;SAF=4340;SAP=9427.2;SAR=0;SRF=3229;SRP=7014.69;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:28,10:28:999:10:360:-21.2346,0,-77.5135	1/1:64:0,64:0:0:64:2296:-206.042,-19.2659,0	0/1:99:78,21:78:2796:21:756:-38.0532,0,-216.685	0/1:147:125,22:125:4476:22:788:-26.9541,0,-355.072	0/1:68:57,11:57:2048:11:396:-15.4377,0,-160.933	0/0:57:52,5:52:1864:5:180:0,-0.64956,-148.501	0/1:101:68,33:68:2448:33:1176:-75.6803,0,-188.315	0/1:121:64,57:64:2292:57:2052:-147.876,0,-166.98	0/1:103:68,35:68:2440:35:1248:-81.2793,0,-184.681	0/1:103:72,31:72:2555:31:1116:-69.6993,0,-197.049	0/1:109:55,54:55:1968:54:1944:-142.081,0,-142.3	0/1:63:27,36:27:955:36:1296:-96.737,0,-65.9394	1/1:57:0,57:0:0:57:2052:-184.009,-17.1587,0	1/1:296:0,296:0:0:296:10616:-952.944,-89.1049,0	1/1:57:0,57:0:0:57:2036:-183.413,-17.1587,0	1/1:60:0,60:0:0:60:2152:-193.261,-18.0618,0	0/1:120:57,63:57:2048:63:2256:-166.213,0,-145.61	1/1:86:0,86:0:0:86:3096:-274.873,-25.8886,0	0/1:101:50,51:50:1796:51:1836:-133.078,0,-129.239	0/1:128:107,21:107:3809:21:748:-28.8916,0,-302.487	0/1:160:120,40:120:4296:40:1436:-81.1743,0,-333.597	0/1:109:93,16:93:3311:16:576:-19.33,0,-263.851	1/1:54:0,54:0:0:54:1925:-173.182,-16.2556,0	1/1:58:3,55:3:100:55:1972:-168.618,-9.03448,0	0/1:37:25,12:25:885:12:428:-27.6571,0,-67.9527	1/1:172:2,170:2:72:170:6067:-537.644,-44.9495,0	1/1:54:0,54:0:0:54:1921:-172.698,-16.2556,0	0/1:22:10,12:10:360:12:432:-32.3562,0,-25.8956	0/1:150:113,37:113:4048:37:1332:-74.906,0,-316.832	0/1:203:176,27:176:6285:27:968:-26.1756,0,-497.726	1/1:110:0,110:0:0:110:3944:-353.429,-33.1133,0	1/1:6:0,6:0:0:6:216:-19.7624,-1.80618,0	0/1:12:10,2:10:356:2:72:-3.21467,0,-28.5611	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.8096,-0.60206,0	1/1:199:0,199:0:0:199:7116:-639.528,-59.905,0	0/1:287:198,89:198:7062:89:3204:-201.477,0,-539.919	0/1:105:48,57:48:1720:57:2044:-150.723,0,-120.957	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.88643	0/1:93:78,15:78:2788:15:540:-20.8511,0,-219.347	0/1:56:27,29:27:968:29:1044:-77.2643,0,-68.9755	0/1:85:64,21:64:2296:21:756:-42.6685,0,-179.061	0/1:89:41,48:41:1472:48:1724:-128.428,0,-105.378	1/1:56:0,56:0:0:56:2007:-180.69,-16.8577,0	0/1:77:56,21:56:1989:21:752:-44.8159,0,-154.963	1/1:27:0,27:0:0:27:972:-87.2671,-8.12781,0	0/1:135:107,28:107:3832:28:1004:-49.715,0,-301.799	1/1:68:0,68:0:0:68:2448:-220.341,-20.47,0	1/1:55:0,55:0:0:55:1976:-177.715,-16.5567,0	1/1:63:0,63:0:0:63:2256:-203.07,-18.9649,0	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.2105	0/1:96:75,21:75:2683:21:756:-39.2965,0,-209.775	1/1:26:0,26:0:0:26:932:-83.8492,-7.82678,0	0/1:26:22,4:22:788:4:144:-5.45337,0,-61.4776	1/1:21:0,21:0:0:21:748:-67.5514,-6.32163,0	0/1:55:41,14:41:1476:14:504:-29.1166,0,-116.031	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4343	0/1:29:19,10:19:672:10:360:-23.9238,0,-51.6339	0/1:81:52,29:52:1853:29:1040:-69.3834,0,-140.239	0/1:221:92,129:92:3300:129:4640:-350.814,0,-228.18	1/1:2:0,2:0:0:2:72:-6.83347,-0.60206,0	0/1:139:116,23:116:4156:23:824:-31.7169,0,-331.224	1/1:66:1,65:1:32:65:2325:-205.134,-16.6787,0	1/1:55:0,55:0:0:55:1968:-176.775,-16.5567,0	1/1:10:0,10:0:0:10:360:-32.7287,-3.0103,0	0/1:158:124,34:124:4430:34:1224:-62.7205,0,-348.443	1/1:70:0,70:0:0:70:2512:-225.835,-21.0721,0	1/1:68:1,67:1:36:67:2408:-212.704,-16.8966,0	1/1:23:0,23:0:0:23:828:-74.6465,-6.92369,0	1/1:156:0,156:0:0:156:5608:-504.275,-46.9607,0	1/1:9:0,9:0:0:9:324:-29.4918,-2.70927,0	0/1:75:63,12:63:2230:12:432:-16.5358,0,-175.834	1/1:53:0,53:0:0:53:1908:-171.48,-15.9546,0	1/1:139:0,139:0:0:139:4975:-446.042,-41.8432,0	1/1:31:0,31:0:0:31:1108:-99.9807,-9.33193,0	1/1:51:0,51:0:0:51:1832:-164.112,-15.3525,0	1/1:27:1,26:1:36:26:928:-80.5024,-5.00417,0	1/1:13:0,13:0:0:13:468:-42.3529,-3.91339,0	1/1:34:0,34:0:0:34:1220:-109.44,-10.235,0	1/1:20:1,19:1:36:19:684:-57.4157,-2.46198,0	0/1:110:80,30:80:2863:30:1076:-63.9815,0,-223.066	1/1:113:0,113:0:0:113:4068:-364.956,-34.0164,0	1/1:88:0,88:0:0:88:3168:-284.814,-26.4906,0	0/1:91:43,48:43:1532:48:1716:-127.096,0,-109.999	0/1:153:72,81:72:2563:81:2908:-214.7,0,-182.979	1/1:31:0,31:0:0:31:1116:-98.8013,-9.33193,0	0/1:66:35,31:35:1260:31:1116:-79.5794,0,-92.5437	0/1:99:59,40:59:2103:40:1436:-99.3762,0,-157.288	0/1:109:70,39:70:2499:39:1400:-92.9874,0,-190.246	0/1:222:109,113:109:3888:113:4053:-297.257,0,-278.74	0/1:86:53,33:53:1899:33:1188:-80.9876,0,-144.595	1/1:17:0,17:0:0:17:608:-54.8979,-5.11751,0	1/1:82:1,81:1:36:81:2916:-258.953,-21.1014,0
chr10	1771797	.	G	A	60298.8	PASS	AB=0.66576;ABP=1143.31;AC=52;AF=0.276596;AN=188;AO=3263;CIGAR=1X;DP=7585;DPB=7585;DPRA=1.62123;EPP=6711.5;EPPR=9189.4;GTI=13;LEN=1;MEANALT=1;MQM=48.0159;MQMR=54.6747;NS=94;NUMALT=1;ODDS=0.564623;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116686;QR=154622;RO=4322;RPL=3219;RPP=6711.5;RPPR=9189.4;RPR=44;RUN=1;SAF=3263;SAP=7088.52;SAR=0;SRF=4322;SRP=9388.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:10,28:10:360:28:1008:-78.1347,0,-21.2346	0/0:61:61,0:61:2180:0:0:0,-18.3628,-195.651	0/1:101:21,80:21:756:80:2872:-222.873,0,-37.4512	0/1:148:22,126:22:792:126:4501:-357.368,0,-27.0131	0/1:67:11,56:11:396:56:1947:-153.042,0,-15.7388	1/1:58:5,53:5:180:53:1889:-150.715,-0.950591,0	0/1:103:34,69:34:1208:69:2475:-190.207,0,-77.9559	0/1:119:56,63:56:2000:63:2264:-164.999,0,-143.828	0/1:102:36,66:36:1269:66:2353:-177.799,0,-83.4871	0/1:109:32,77:32:1129:77:2756:-213.54,0,-69.058	0/1:113:56,57:56:2012:57:2048:-148.249,0,-146.994	0/1:64:37,27:37:1332:27:972:-67.0805,0,-99.6664	0/0:57:57,0:57:2048:0:0:0,-17.1587,-183.654	0/0:297:297,0:297:10657:0:0:0,-89.4059,-956.461	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.605	0/0:60:60,0:60:2133:0:0:0,-18.0618,-191.67	0/1:123:63,60:63:2256:60:2152:-152.873,0,-165.155	0/0:87:87,0:87:3094:0:0:0,-26.1896,-275.018	0/1:103:52,51:52:1849:51:1820:-130.799,0,-133.643	0/1:130:21,109:21:741:109:3890:-309.334,0,-27.5864	0/1:159:39,120:39:1385:120:4320:-337.507,0,-76.8914	0/1:109:16,93:16:572:93:3342:-266.648,0,-18.9694	0/0:54:54,0:54:1936:0:0:0,-16.2556,-173.486	0/0:57:54,3:54:1940:3:102:0,-8.40049,-165.408	0/1:40:12,28:12:432:28:989:-74.182,0,-27.1136	0/0:173:171,2:171:6115:2:72:0,-45.2505,-542.11	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.276	0/1:23:13,10:13:464:10:360:-25.5946,0,-34.9298	0/1:155:38,117:38:1360:117:4193:-328.602,0,-75.8333	0/1:202:24,178:24:849:178:6370:-505.475,0,-15.7896	0/0:108:108,0:108:3837:0:0:0,-32.5112,-343.874	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7624	0/1:12:2,10:2:72:10:348:-27.8619,0,-3.21467	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2801	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.43573	0/0:195:195,0:195:6981:0:0:0,-58.7008,-627.435	0/1:286:86,200:86:3080:200:7149:-548.061,0,-190.687	0/1:109:60,49:60:2156:49:1760:-123.317,0,-159.589	0/1:3:1,2:1:36:2:72:-5.88643,0,-2.69008	0/1:95:16,79:16:576:79:2830:-223.049,0,-23.4876	0/1:57:29,28:29:1025:28:1008:-71.4023,0,-75.2571	0/1:87:21,66:21:756:66:2371:-184.955,0,-42.0664	0/1:88:48,40:48:1724:40:1436:-102.497,0,-128.732	0/0:53:53,0:53:1877:0:0:0,-15.9546,-169.001	0/1:76:20,56:20:712:56:1981:-154.556,0,-41.5154	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.4507	0/1:137:29,108:29:1044:108:3854:-303.217,0,-52.7095	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.028	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.28	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.092	1/1:10:0,10:0:0:10:356:-32.1252,-3.0103,0	0/1:95:21,74:21:752:74:2656:-207.652,0,-39.2414	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.1602	0/1:25:3,22:3:93:22:784:-61.4906,0,-1.13382	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.4589	0/1:54:12,42:12:428:42:1512:-119.557,0,-22.5855	1/1:9:0,9:0:0:9:316:-28.7172,-2.70927,0	0/1:29:10,19:10:351:19:676:-51.9869,0,-23.1811	0/1:83:32,51:32:1148:51:1813:-136.102,0,-78.4895	0/1:222:128,94:128:4600:94:3380:-235.031,0,-346.261	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83347	0/1:140:24,116:24:860:116:4132:-328.699,0,-34.9538	0/0:68:67,1:67:2396:1:36:0,-16.8966,-211.457	0/0:56:56,0:56:2012:0:0:0,-16.8577,-180.473	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9656	0/1:157:33,124:33:1188:124:4433:-349.604,0,-59.9144	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.207	0/0:70:69,1:69:2476:1:36:0,-17.4987,-218.819	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.8944	0/0:155:155,0:155:5580:0:0:0,-46.6596,-501.754	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2549	0/1:75:12,63:12:428:63:2249:-177.516,0,-16.184	0/0:53:53,0:53:1866:0:0:0,-15.9546,-167.764	0/0:142:142,0:142:5096:0:0:0,-42.7463,-456.63	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.698	0/0:45:45,0:45:1608:0:0:0,-13.5463,-144.183	0/0:25:24,1:24:845:1:36:0,-4.40211,-73.0505	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.3529	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.515	0/0:19:18,1:18:640:1:36:0,-2.16095,-53.8229	0/1:111:30,81:30:1056:81:2892:-225.494,0,-61.8852	0/0:112:112,0:112:4020:0:0:0,-33.7154,-360.788	0/0:88:88,0:88:3145:0:0:0,-26.4906,-282.748	0/1:94:50,44:50:1796:44:1571:-112.577,0,-133.345	0/1:155:81,74:81:2867:74:2652:-190.327,0,-210.524	0/0:31:31,0:31:1108:0:0:0,-9.33193,-98.1138	0/1:67:31,36:31:1108:36:1296:-95.4454,0,-78.5626	0/1:97:41,56:41:1476:56:1999:-148.858,0,-103.58	0/1:111:41,70:41:1464:70:2508:-189.14,0,-98.1423	0/1:219:110,109:110:3936:109:3911:-281.439,0,-287.716	0/1:86:33,53:33:1179:53:1866:-141.663,0,-80.2871	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.5374	0/0:80:79,1:79:2824:1:36:0,-20.4993,-250.692
chr10	1787158	.	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chr10	1804124	.	C	T	31979.4	PASS	AB=0.494376;ABP=4.06054;AC=50;AF=0.265957;AN=188;AO=1901;CIGAR=1X;DP=6962;DPB=6962;DPRA=1.17299;EPP=4130.98;EPPR=10973.3;GTI=2;LEN=1;MEANALT=1.07692;MQM=59.8716;MQMR=51.382;NS=94;NUMALT=1;ODDS=1.18594;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68144;QR=180175;RO=5052;RPL=0;RPP=4130.98;RPPR=10973.3;RPR=1901;RUN=1;SAF=1901;SAP=4130.98;SAR=0;SRF=5052;SRP=10973.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:22,23:22:779:23:820:-60.5762,0,-55.7643	0/0:62:60,2:60:2152:2:72:0,-11.8271,-185.965	0/1:122:59,63:59:2108:63:2260:-166.934,0,-150.546	0/1:213:112,101:112:3973:101:3624:-261.75,0,-292.411	0/1:59:31,27:31:1112:27:972:-69.9953,0,-82.3438	0/1:30:15,15:15:540:15:540:-39.8949,0,-39.6295	0/1:77:46,31:46:1648:31:1112:-77.212,0,-124.834	0/1:142:89,53:89:3192:53:1885:-127.18,0,-241.067	0/1:76:52,24:52:1852:24:855:-54.3915,0,-142.974	0/1:54:17,36:17:603:36:1295:-100.517,0,-38.0705	0/1:21:10,11:10:351:11:396:-29.6611,0,-25.5464	0/1:37:12,25:12:432:25:895:-69.7322,0,-27.8704	0/0:39:39,0:39:1400:0:0:0,-11.7402,-125.524	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.3349	0/0:28:28,0:28:976:0:0:0,-8.42884,-88.013	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.251	0/1:15:7,8:7:248:8:284:-21.3879,0,-18.0236	0/0:17:17,0:17:612:0:0:0,-5.11751,-53.9995	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.6977	0/1:170:90,79:90:3208:79:2831:-203.808,0,-236.353	0/1:126:49,77:49:1748:77:2753:-210.08,0,-118.666	0/1:150:50,100:50:1788:100:3592:-278.331,0,-115.351	0/0:70:70,0:70:2500:0:0:0,-21.0721,-224.388	0/1:53:48,5:48:1712:5:176:-0.23043,0,-137.834	0/1:44:20,24:20:716:24:852:-63.7341,0,-51.3541	0/0:228:228,0:228:8167:0:0:0,-68.6348,-732.471	0/0:175:174,0:174:6192:0:0:0,-52.3792,-554.972	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.3061	0/1:233:119,114:119:4268:114:4081:-297.319,0,-312.934	0/1:217:116,100:116:4140:100:3600:-258.931,0,-304.568	0/0:87:87,0:87:3073:0:0:0,-26.1896,-275.854	0/0:6:6,0:6:208:0:0:0,-1.80618,-18.9198	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7305	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.8721	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.92901	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.79966	0/0:86:86,0:86:3092:0:0:0,-25.8886,-276.989	0/1:173:92,81:92:3259:81:2908:-209.766,0,-239.553	0/1:12:4,8:4:144:8:288:-22.655,0,-9.62908	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	0/1:105:49,56:49:1760:56:2008:-149.377,0,-126.078	0/1:10:3,7:3:104:7:248:-19.6539,0,-6.67223	0/1:134:71,63:71:2552:63:2260:-163.325,0,-188.638	0/1:22:15,7:15:536:7:252:-16.3955,0,-41.8415	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.6421	0/1:107:61,46:61:2188:46:1637:-115.407,0,-164.024	0/0:115:115,0:115:4116:0:0:0,-34.6184,-367.829	0/1:226:118,108:118:4183:108:3870:-280.454,0,-307.53	0/0:88:87,0:87:3120:0:0:0,-26.1896,-279.552	0/0:112:112,0:112:3978:0:0:0,-33.7154,-357.287	0/0:112:112,0:112:3996:0:0:0,-33.7154,-357.436	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.853	0/1:137:65,72:65:2340:72:2588:-191.86,0,-167.663	0/0:94:94,0:94:3360:0:0:0,-28.2968,-301.15	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.5154	0/0:111:110,0:110:3908:0:0:0,-33.1133,-349.876	0/1:20:8,12:8:284:12:431:-33.1101,0,-19.8433	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2071	0/1:67:36,31:36:1280:31:1104:-79.5016,0,-95.0136	0/1:60:19,41:19:667:41:1476:-115.071,0,-42.1746	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.0329	0/1:180:81,99:81:2900:99:3539:-264.525,0,-206.56	0/0:161:161,0:161:5764:0:0:0,-48.4658,-517.005	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.096	0/0:72:72,0:72:2459:0:0:0,-21.6742,-221.001	0/1:140:67,73:67:2387:73:2620:-193.903,0,-172.169	0/0:172:171,1:171:6071:1:36:0,-48.1789,-540.046	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.7556	0/0:56:56,0:56:1985:0:0:0,-16.8577,-177.573	0/0:30:30,0:30:1071:0:0:0,-9.0309,-96.4988	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0402	0/1:81:43,38:43:1540:38:1368:-99.0292,0,-112.087	0/0:33:33,0:33:1169:0:0:0,-9.93399,-104.682	0/0:204:204,0:204:7259:0:0:0,-61.4101,-650.58	0/0:122:122,0:122:4308:0:0:0,-36.7257,-386.986	0/0:183:181,0:181:6458:0:0:0,-54.4864,-575.757	0/0:59:58,1:58:2076:1:36:0,-14.1625,-181.837	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.2098	0/0:58:58,0:58:2088:0:0:0,-17.4597,-186.999	0/0:125:125,0:125:4480:0:0:0,-37.6287,-399.402	0/1:144:76,68:76:2708:68:2432:-175.787,0,-199.622	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.062	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.191	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.6338	0/1:77:39,38:39:1400:38:1364:-99.8814,0,-101.417	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.6305	0/1:33:15,18:15:532:18:648:-48.7179,0,-36.9313	0/1:41:18,23:18:639:23:828:-62.5003,0,-45.1934	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.5828	0/1:46:21,25:21:752:25:900:-67.4736,0,-53.9162	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2321	0/0:109:109,0:109:3904:0:0:0,-32.8123,-350.449	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.189
chr10	1804125	.	T	C	102726	PASS	AB=0.498141;ABP=3.12331;AC=139;AF=0.739362;AN=188;AO=5035;CIGAR=1X;DP=6941;DPB=6941;DPRA=10.6513;EPP=10936.4;EPPR=4139.67;GTI=1;LEN=1;MEANALT=1.01075;MQM=51.3535;MQMR=59.8514;NS=94;NUMALT=1;ODDS=0.981598;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179014;QR=68256;RO=1905;RPL=0;RPP=10936.4;RPPR=4139.67;RPR=5035;RUN=1;SAF=5035;SAP=10936.4;SAR=0;SRF=1905;SRP=4139.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:23,21:23:824:21:742:-52.8398,0,-61.238	1/1:61:2,59:2:72:59:2100:-181.392,-11.5261,0	0/1:122:63,59:63:2264:59:2108:-150.518,0,-167.294	0/1:216:101,115:101:3617:115:4096:-302.491,0,-259.927	0/1:59:26,33:26:936:33:1176:-87.95,0,-66.7987	0/1:30:15,15:15:540:15:540:-39.6295,0,-39.8949	0/1:77:31,46:31:1108:46:1621:-122.488,0,-76.8517	0/1:142:53,89:53:1900:89:3160:-238.757,0,-128.532	0/1:76:25,51:25:892:51:1819:-140.144,0,-57.1618	0/1:54:37,17:37:1324:17:599:-37.7739,0,-103.178	0/1:19:11,8:11:392:8:280:-19.7587,0,-29.9005	0/1:37:25,12:25:892:12:428:-27.5186,0,-69.4616	1/1:39:0,39:0:0:39:1391:-124.737,-11.7402,0	1/1:24:0,24:0:0:24:847:-76.1937,-7.22472,0	1/1:28:0,28:0:0:28:1000:-90.1681,-8.42884,0	1/1:34:0,34:0:0:34:1207:-108.091,-10.235,0	0/1:15:8,7:8:288:7:252:-18.3777,0,-21.752	1/1:16:0,16:0:0:16:568:-51.1748,-4.81648,0	0/1:7:3,4:3:108:4:135:-10.3188,0,-7.96796	0/1:170:79,91:79:2836:91:3242:-239.145,0,-204.303	0/1:124:76,47:76:2719:47:1671:-112.203,0,-207.567	0/1:149:99,50:99:3552:50:1780:-114.941,0,-275.034	1/1:69:0,69:0:0:69:2464:-221.229,-20.7711,0	1/1:53:4,49:4:144:49:1752:-143.962,-2.64097,0	0/1:44:24,20:24:860:20:716:-51.3541,0,-64.4575	1/1:221:0,221:0:0:221:7900:-708.719,-66.5276,0	1/1:178:0,178:0:0:178:6337:-568.094,-53.5833,0	0/1:19:12,7:12:432:7:248:-16.8067,0,-33.5016	0/1:232:112,120:112:4020:120:4276:-313.999,0,-292.146	0/1:225:105,120:105:3772:120:4268:-313.675,0,-271.866	1/1:88:0,88:0:0:88:3126:-280.182,-26.4906,0	1/1:6:0,6:0:0:6:201:-18.2758,-1.80618,0	0/1:8:3,5:3:108:5:180:-14.0926,0,-7.66693	1/1:4:0,4:0:0:4:144:-13.2304,-1.20412,0	1/1:3:0,3:0:0:3:108:-9.92901,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	1/1:86:0,86:0:0:86:3071:-275.246,-25.8886,0	0/1:172:81,91:81:2903:91:3238:-237.961,0,-209.617	0/1:12:8,4:8:288:4:144:-9.62908,0,-22.655	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:105:56,49:56:2016:49:1748:-125.263,0,-150.097	0/1:10:7,3:7:252:3:99:-6.20832,0,-20.0187	0/1:132:64,68:64:2259:68:2418:-177.556,0,-163.835	0/1:21:7,14:7:252:14:500:-38.9084,0,-16.6965	1/1:31:0,31:0:0:31:1091:-98.0493,-9.33193,0	0/1:107:46,61:46:1652:61:2188:-163.79,0,-116.758	1/1:115:0,115:0:0:115:4099:-366.343,-34.6185,0	0/1:225:109,116:109:3892:116:4144:-304.178,0,-282.73	1/1:89:0,89:0:0:89:3129:-280.648,-26.7917,0	1/1:113:0,113:0:0:113:4015:-360.592,-34.0164,0	1/1:112:0,112:0:0:112:3985:-356.26,-33.7154,0	0/1:11:6,5:6:212:5:180:-13.2173,0,-16.1135	0/1:138:71,67:71:2540:67:2376:-170.848,0,-187.245	1/1:92:0,92:0:0:92:3269:-293.294,-27.6948,0	0/1:5:2,3:2:72:3:104:-8.15388,0,-5.33157	1/1:111:0,111:0:0:111:3952:-353.941,-33.4143,0	0/1:20:12,8:12:432:8:288:-20.2024,0,-33.2006	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:10:2,8:2:72:8:288:-23.2071,0,-3.82642	0/1:67:30,37:30:1067:37:1316:-98.244,0,-76.1722	0/1:60:41,19:41:1476:19:672:-42.6246,0,-115.071	1/1:17:0,17:0:0:17:580:-52.129,-5.11751,0	0/1:177:99,78:99:3551:78:2792:-197.741,0,-266.511	1/1:160:0,160:0:0:160:5696:-510.803,-48.1648,0	1/1:46:0,46:0:0:46:1639:-147.239,-13.8474,0	1/1:79:0,79:0:0:79:2816:-252.653,-23.7814,0	0/1:141:73,68:73:2600:68:2415:-174.36,0,-191.801	1/1:164:1,163:1:36:163:5790:-514.931,-45.7706,0	1/1:13:0,13:0:0:13:455:-41.1778,-3.91339,0	1/1:53:0,53:0:0:53:1873:-167.723,-15.9546,0	1/1:30:0,30:0:0:30:1064:-95.8837,-9.0309,0	1/1:13:0,13:0:0:13:460:-41.6778,-3.91339,0	0/1:83:38,45:38:1360:45:1604:-117.218,0,-97.7069	1/1:32:0,32:0:0:32:1139:-102.001,-9.63296,0	1/1:205:0,205:0:0:205:7296:-653.873,-61.7112,0	1/1:122:0,122:0:0:122:4320:-387.884,-36.7257,0	1/1:179:0,179:0:0:179:6343:-566.015,-53.8844,0	1/1:60:1,59:1:36:59:2070:-181.725,-14.4635,0	1/1:10:0,10:0:0:10:356:-32.2034,-3.0103,0	1/1:56:0,56:0:0:56:1991:-178.777,-16.8577,0	1/1:123:0,123:0:0:123:4350:-387.914,-37.0267,0	0/1:143:68,75:68:2440:75:2680:-197.309,0,-176.803	1/1:33:0,33:0:0:33:1164:-104.921,-9.93399,0	1/1:36:0,36:0:0:36:1280:-115.34,-10.8371,0	0/1:28:13,15:13:468:15:536:-39.9738,0,-34.0308	0/1:77:39,38:39:1400:38:1335:-95.9362,0,-103.12	1/1:12:0,12:0:0:12:424:-38.2787,-3.61236,0	0/1:32:17,15:17:612:15:527:-37.448,0,-45.7805	0/1:41:23,18:23:824:18:640:-45.2902,0,-62.1395	0/1:12:6,6:6:216:6:216:-15.9436,0,-16.1782	0/1:43:24,19:24:864:19:659:-46.4954,0,-65.1383	0/1:25:16,9:16:576:9:312:-20.8489,0,-44.6492	1/1:110:0,110:0:0:110:3932:-352.97,-33.1133,0	1/1:38:1,37:1:36:37:1320:-115.109,-7.84087,0
chr10	1804129	.	CTAAAAATT	CTAATAATA,CTAATAATT	145051	PASS	AB=0.501311,0.491348;ABP=3.06723,5.49036;AC=139,49;AF=0.739362,0.260638;AN=188;AO=5125,1890;CIGAR=4M1X3M1X,4M1X4M;DP=7065;DPB=7065.22;DPRA=12.6505,1.16614;EPP=11131.8,4012.1;EPPR=5.18177;GTI=1;LEN=9,1;MEANALT=1.98925,2.46154;MQM=51.4008,59.8778;MQMR=60;NS=94;NUMALT=2;ODDS=1.95667;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=30,0;PQR=0;PRO=0;QA=177549,67820;QR=33;RO=1;RPL=0,11;RPP=11131.8,4012.1;RPPR=5.18177;RPR=5125,1879;RUN=1,1;SAF=5125,1890;SAP=11131.8,4107.09;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,21,22:0:0:21,22:714,788:-121.689,-64.3017,-57.98,-57.4142,0,-50.7915	1/1:64:0,62,2:0:0:62,2:2174,72:-194.367,-18.6639,0,-188.492,-12.4292,-187.889	1/2:122:0,60,62:0:0:60,62:2082,2228:-348.758,-182.117,-164.055,-166.992,0,-148.328	1/2:217:0,116,98:0:0:116,98:4027,3520:-612.856,-287.179,-252.26,-325.705,0,-296.204	1/2:60:0,33,27:0:0:33,27:1131,968:-170.77,-79.3062,-69.3722,-91.8149,0,-83.6871	1/2:30:0,15,14:0:0:15,14:525,504:-83.5974,-41.1132,-36.5977,-42.4791,0,-38.2647	1/2:77:0,45,31:0:0:45,31:1585,1116:-219.55,-91.0599,-77.5136,-128.487,0,-119.155	1/2:144:0,90,53:0:0:90,53:3132,1900:-407.071,-155.032,-127.939,-252.1,0,-236.146	1/2:75:0,51,24:0:0:51,24:1750,856:-211.319,-70.1364,-54.7839,-141.534,0,-134.309	1/2:55:0,18,37:0:0:18,37:632,1332:-160.265,-109.016,-103.597,-51.6025,0,-40.4644	1/2:21:0,10,11:0:0:10,11:353,396:-61.3386,-32.6714,-29.6611,-29.0229,0,-25.7116	1/2:38:0,12,25:0:0:12,25:429,896:-107.854,-73.0748,-69.4625,-34.7759,0,-27.2501	1/1:39:0,39,0:0:0:39,0:1382,0:-123.963,-11.7402,0,-123.963,-11.7402,-123.963	1/1:25:0,25,0:0:0:25,0:873,0:-78.2914,-7.52575,0,-78.2914,-7.52575,-78.2914	1/1:28:0,28,0:0:0:28,0:987,0:-88.7053,-8.42884,0,-88.7053,-8.42884,-88.7053	1/1:34:0,34,0:0:0:34,0:1199,0:-107.395,-10.235,0,-107.395,-10.235,-107.395	1/2:15:0,7,8:0:0:7,8:244,288:-43.5853,-23.8592,-21.752,-20.079,0,-17.6707	1/1:17:0,17,0:0:0:17,0:589,0:-53.0785,-5.11751,0,-53.0785,-5.11751,-53.0785	1/2:8:0,5,3:0:0:5,3:160,108:-21.9808,-9.17208,-7.66693,-13.1531,0,-12.25	1/2:172:0,92,80:0:0:92,80:3186,2868:-491.969,-234.275,-206.58,-258.047,0,-233.964	1/2:125:0,48,76:0:0:48,76:1664,2724:-356.932,-222.225,-207.776,-134.757,0,-111.879	1/2:152:0,52,100:0:0:52,100:1795,3581:-437.703,-292.392,-276.739,-145.66,0,-115.557	1/1:71:0,71,0:0:0:71,0:2487,0:-223.295,-21.3731,0,-223.295,-21.3731,-223.295	1/1:55:0,50,5:0:0:50,5:1691,176:-151.61,-15.0515,0,-137.281,-0.371631,-135.775	1/2:44:0,20,24:0:0:20,24:687,860:-126.12,-70.4781,-64.4575,-55.9913,0,-48.7666	1/1:228:0,226,0:0:0:226,0:7885,0:-707.306,-68.0328,0,-707.306,-68.0328,-707.306	1/1:181:0,181,0:0:0:181,0:6197,0:-555.942,-54.4864,0,-555.942,-54.4864,-555.942	1/2:19:0,7,11:0:0:7,11:251,396:-52.7558,-32.3309,-30.2237,-20.4416,0,-17.1302	1/2:235:1,119,114:1:33:119,114:4091,4100:-662.963,-331.836,-298.682,-328.775,0,-297.125	1/2:223:0,120,102:0:0:120,102:4171,3672:-636.099,-299.585,-263.462,-336.556,0,-305.851	1/1:89:0,88,0:0:0:88,0:3033,0:-271.77,-26.4906,0,-271.77,-26.4906,-271.77	1/1:6:0,6,0:0:0:6,0:199,0:-18.1239,-1.80618,0,-18.1239,-1.80618,-18.1239	1/2:8:0,5,3:0:0:5,3:169,108:-22.8286,-9.17208,-7.66693,-14.0079,0,-13.1048	1/1:4:0,4,0:0:0:4,0:144,0:-13.2304,-1.20412,0,-13.2304,-1.20412,-13.2304	1/1:3:0,3,0:0:0:3,0:101,0:-9.36008,-0.90309,0,-9.36008,-0.90309,-9.36008	1/1:2:0,2,0:0:0:2,0:72,0:-6.79966,-0.60206,0,-6.79966,-0.60206,-6.79966	1/1:88:0,88,0:0:0:88,0:3112,0:-278.869,-26.4906,0,-278.869,-26.4906,-278.869	1/2:175:0,93,79:0:0:93,79:3205,2840:-491.108,-231.668,-203.673,-259.508,0,-235.727	1/2:12:0,4,8:0:0:4,8:142,288:-35.3641,-23.8592,-22.655,-11.8602,0,-9.452	1/1:2:0,2,0:0:0:2,0:69,0:-6.54037,-0.60206,0,-6.54037,-0.60206,-6.54037	1/2:107:0,50,56:0:0:50,56:1700,2000:-300.514,-163.15,-148.099,-137.452,0,-120.595	1/2:10:0,3,7:0:0:3,7:106,252:-29.5313,-20.9217,-20.0187,-8.96418,0,-6.85697	1/2:137:0,72,64:0:0:72,64:2490,2292:-388.593,-186.925,-165.251,-201.669,0,-182.403	1/2:22:0,15,7:0:0:15,7:527,252:-63.7049,-20.911,-16.3955,-43.1507,0,-41.0435	1/1:32:0,32,0:0:0:32,0:1136,0:-102.245,-9.63296,0,-102.245,-9.63296,-102.245	1/2:106:0,61,45:0:0:61,45:2136,1605:-303.968,-131.192,-112.829,-173.129,0,-159.583	1/1:118:0,118,0:0:0:118,0:4096,0:-366.484,-35.5215,0,-366.484,-35.5215,-366.484	1/2:230:0,120,107:0:0:120,107:4153,3844:-650.265,-313.575,-277.452,-336.69,0,-304.48	1/1:91:0,90,0:0:0:90,0:3075,0:-276.033,-27.0927,0,-276.033,-27.0927,-276.033	1/1:115:0,115,0:0:0:115,0:4004,0:-359.614,-34.6185,0,-359.614,-34.6185,-359.614	1/1:113:0,112,0:0:0:112,0:3846,0:-343.761,-33.7154,0,-343.761,-33.7154,-343.761	1/2:11:0,5,6:0:0:5,6:175,216:-32.1993,-17.9843,-16.4792,-14.5691,0,-12.763	1/2:138:0,68,70:0:0:68,70:2310,2505:-390.498,-204.582,-184.112,-186.264,0,-165.192	1/1:95:0,94,0:0:0:94,0:3276,0:-294.221,-28.2968,0,-294.221,-28.2968,-294.221	1/2:5:0,3,2:0:0:3,2:103,72:-14.5463,-6.23466,-5.33157,-8.66424,0,-8.06218	1/1:114:0,114,0:0:0:114,0:3974,0:-356.326,-34.3174,0,-356.326,-34.3174,-356.326	1/2:20:0,8,12:0:0:8,12:27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chr10	1804150	.	G	C	102255	PASS	AB=0.500401;ABP=3.01553;AC=139;AF=0.739362;AN=188;AO=5010;CIGAR=1X;DP=6893;DPB=6893;DPRA=12.3423;EPP=10864.7;EPPR=4091.89;GTI=1;LEN=1;MEANALT=1;MQM=51.3685;MQMR=59.8646;NS=94;NUMALT=1;ODDS=1.25601;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177947;QR=67445;RO=1883;RPL=5008;RPP=10864.7;RPPR=4091.89;RPR=2;RUN=1;SAF=5010;SAP=10882.1;SAR=0;SRF=1883;SRP=4091.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:21,22:21:744:22:779:-56.5753,0,-54.34	1/1:64:2,62:2:72:62:2212:-191.187,-12.4292,0	0/1:122:63,59:63:2242:59:2091:-149.379,0,-165.314	0/1:213:100,113:100:3584:113:4001:-294.318,0,-257.864	0/1:58:27,31:27:972:31:1112:-82.5011,0,-70.3348	0/1:30:15,15:15:540:15:531:-38.8303,0,-39.8949	0/1:75:30,45:30:1080:45:1620:-122.917,0,-74.936	0/1:143:54,89:54:1940:89:3141:-236.748,0,-131.829	0/1:73:22,51:22:788:51:1832:-142.182,0,-49.2696	0/1:54:37,17:37:1332:17:612:-38.9357,0,-103.898	0/1:21:11,10:11:396:10:360:-26.3391,0,-29.6611	0/1:36:24,12:24:864:12:428:-27.8196,0,-67.2455	1/1:39:0,39:0:0:39:1391:-124.728,-11.7402,0	1/1:25:0,25:0:0:25:896:-80.3349,-7.52575,0	1/1:29:0,29:0:0:29:1036:-93.4073,-8.72987,0	1/1:33:0,33:0:0:33:1171:-104.87,-9.93399,0	0/1:14:8,6:8:288:6:216:-15.4688,0,-22.053	1/1:18:0,18:0:0:18:622:-55.5922,-5.41854,0	0/1:8:3,5:3:108:5:180:-14.0541,0,-7.66693	0/1:169:80,89:80:2857:89:3181:-234.536,0,-206.492	0/1:121:74,47:74:2660:47:1661:-112.367,0,-203.221	0/1:147:97,50:97:3480:50:1789:-116.418,0,-269.159	1/1:67:0,67:0:0:67:2400:-215.463,-20.169,0	1/1:55:5,50:5:176:50:1768:-142.546,-0.371631,0	0/1:43:23,20:23:812:20:704:-50.5866,0,-60.4376	1/1:216:0,216:0:0:216:7671:-688.317,-65.0225,0	1/1:178:0,178:0:0:178:6327:-567.424,-53.5833,0	0/1:19:12,7:12:428:7:248:-16.7156,0,-33.1392	0/1:229:114,115:114:4096:115:4119:-300.768,0,-299.861	0/1:211:100,111:100:3596:111:3948:-289.449,0,-260.292	1/1:86:0,86:0:0:86:3037:-272.453,-25.8886,0	1/1:5:0,5:0:0:5:167:-15.329,-1.50515,0	0/1:8:3,5:3:108:5:180:-14.0926,0,-7.66693	1/1:4:0,4:0:0:4:144:-13.2304,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.70649,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	1/1:87:0,87:0:0:87:3073:-275.504,-26.1896,0	0/1:173:80,93:80:2876:93:3299:-243.778,0,-206.887	0/1:12:8,4:8:288:4:144:-9.62908,0,-22.655	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:104:55,49:55:1968:49:1730:-123.969,0,-146.08	0/1:10:7,3:7:252:3:104:-6.67223,0,-20.0187	0/1:133:62,71:62:2209:71:2521:-186.175,0,-159.036	0/1:21:7,14:7:248:14:500:-38.9489,0,-16.3318	1/1:29:0,29:0:0:29:1029:-92.7737,-8.72987,0	0/1:106:46,60:46:1637:60:2146:-160.507,0,-115.708	1/1:115:0,115:0:0:115:4104:-366.782,-34.6185,0	0/1:225:104,121:104:3720:121:4269:-315.523,0,-267.252	1/1:90:0,90:0:0:90:3190:-286.297,-27.0927,0	1/1:111:0,111:0:0:111:3971:-356.494,-33.4143,0	1/1:110:0,110:0:0:110:3904:-349.267,-33.1133,0	0/1:11:6,5:6:216:5:180:-13.2173,0,-16.4792	0/1:137:71,66:71:2521:66:2355:-169.066,0,-185.871	1/1:95:0,95:0:0:95:3392:-304.026,-28.5979,0	0/1:5:2,3:2:72:3:100:-7.79236,0,-5.33157	1/1:111:0,111:0:0:111:3932:-352.396,-33.4143,0	0/1:20:12,8:12:432:8:288:-20.2024,0,-33.2006	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:10:2,8:2:72:8:288:-23.2071,0,-3.82642	0/1:65:30,35:30:1076:35:1234:-91.4877,0,-77.5859	0/1:59:41,18:41:1464:18:635:-39.5998,0,-114.292	1/1:17:0,17:0:0:17:604:-54.0329,-5.11751,0	0/1:175:96,79:96:3439:79:2815:-200.416,0,-257.04	1/1:159:0,159:0:0:159:5635:-505.635,-47.8638,0	1/1:44:0,44:0:0:44:1576:-141.409,-13.2453,0	1/1:75:0,75:0:0:75:2614:-234.681,-22.5773,0	0/1:141:72,69:72:2584:69:2472:-179.449,0,-190.364	1/1:167:1,166:1:36:166:5858:-521.611,-46.6737,0	1/1:13:0,13:0:0:13:456:-41.2774,-3.91339,0	1/1:56:0,56:0:0:56:2000:-178.99,-16.8577,0	1/1:29:0,29:0:0:29:1023:-92.1994,-8.72987,0	1/1:13:0,13:0:0:13:453:-41.0402,-3.91339,0	0/1:84:39,45:39:1404:45:1591:-116.071,0,-101.365	1/1:33:0,33:0:0:33:1162:-104.135,-9.93399,0	1/1:205:0,205:0:0:205:7327:-656.296,-61.7112,0	1/1:119:0,119:0:0:119:4249:-381.394,-35.8226,0	1/1:178:0,178:0:0:178:6299:-561.702,-53.5833,0	1/1:55:1,54:1:36:54:1914:-167.582,-12.9584,0	1/1:10:0,10:0:0:10:356:-32.2034,-3.0103,0	1/1:57:0,57:0:0:57:2010:-180.459,-17.1587,0	1/1:120:0,120:0:0:120:4267:-380.497,-36.1236,0	0/1:146:69,77:69:2476:77:2749:-202.765,0,-179.138	1/1:30:0,30:0:0:30:1072:-96.6512,-9.0309,0	1/1:36:0,36:0:0:36:1280:-115.334,-10.8371,0	0/1:28:13,15:13:464:15:540:-40.3328,0,-33.6687	0/1:78:39,39:39:1396:39:1378:-99.6469,0,-102.459	1/1:10:0,10:0:0:10:352:-31.842,-3.0103,0	0/1:34:18,16:18:644:16:558:-39.8542,0,-48.0556	0/1:42:23,19:23:816:19:668:-47.5089,0,-61.1178	0/1:12:6,6:6:216:6:216:-15.9436,0,-16.1782	0/1:45:25,20:25:892:20:699:-49.4848,0,-67.0533	0/1:26:17,9:17:612:9:320:-21.2693,0,-47.5867	1/1:111:0,111:0:0:111:3917:-351.855,-33.4143,0	1/1:38:0,38:0:0:38:1338:-120.32,-11.4391,0
chr10	1832825	.	G	C	31591.5	PASS	AB=0.500267;ABP=3.01262;AC=47;AF=0.255435;AN=184;AO=1881;CIGAR=1X;DP=6989;DPB=6989;DPRA=1.14698;EPP=4061.53;EPPR=10934.8;GTI=0;LEN=1;MEANALT=1;MQM=59.9995;MQMR=59.9943;NS=92;NUMALT=1;ODDS=2.64916;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67139;QR=181145;RO=5106;RPL=3;RPP=4061.53;RPPR=10934.8;RPR=1878;RUN=1;SAF=0;SAP=4087.55;SAR=1881;SRF=0;SRP=11090.5;SRR=5106;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:30,28:30:1068:28:1008:-73.5766,0,-78.9723	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/1:111:60,51:60:2135:51:1803:-129.137,0,-159.003	0/1:251:136,115:136:4833:115:4115:-294.975,0,-359.568	0/1:26:16,10:16:572:10:356:-24.5545,0,-43.9866	0/1:47:18,29:18:640:29:1040:-79.766,0,-43.7809	0/1:106:56,50:56:1995:50:1786:-129.113,0,-147.914	0/1:73:37,36:37:1316:36:1292:-94.6086,0,-96.7666	0/1:157:80,77:80:2868:77:2746:-200.12,0,-211.095	0/1:103:42,61:42:1496:61:2184:-165.82,0,-103.928	0/1:35:19,16:19:671:16:572:-41.2774,0,-50.1797	0/1:100:49,51:49:1741:51:1813:-133.347,0,-126.869	0/0:77:77,0:77:2747:0:0:0,-23.1793,-247.472	0/0:39:39,0:39:1352:0:0:0,-11.7402,-121.973	0/0:65:65,0:65:2314:0:0:0,-19.5669,-208.519	0/0:53:53,0:53:1827:0:0:0,-15.9546,-164.707	0/1:18:10,8:10:356:8:284:-20.4848,0,-26.9627	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/1:28:11,17:11:396:17:604:-46.2618,0,-27.5539	0/1:129:63,66:63:2234:66:2364:-174.185,0,-162.49	0/1:147:64,83:64:2269:83:2967:-223.012,0,-160.22	0/1:51:16,35:16:568:35:1260:-98.353,0,-36.0993	0/0:80:80,0:80:2851:0:0:0,-24.0824,-256.828	0/0:70:65,5:65:2319:5:176:0,-4.88708,-192.785	0/1:37:16,21:16:563:21:743:-56.0544,0,-39.8611	0/0:261:261,0:261:9266:0:0:0,-78.5688,-833.916	0/0:210:208,0:208:7379:0:0:0,-62.6142,-663.858	0/1:36:22,14:22:783:14:496:-34.1372,0,-59.9559	0/1:178:90,88:90:3186:88:3156:-230.681,0,-233.382	0/1:124:63,61:63:2238:61:2180:-159.139,0,-164.355	0/0:100:99,1:99:3516:1:36:0,-26.5047,-313.054	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:161:161,0:161:5734:0:0:0,-48.4658,-516.176	0/1:55:26,29:26:907:29:1036:-76.9967,0,-65.3877	0/1:29:11,18:11:396:18:640:-49.1994,0,-27.2529	.:.:.:.:.:.:.:.	0/1:111:64,47:64:2271:47:1684:-118.433,0,-171.238	0/1:23:12,11:12:413:11:396:-29.0591,0,-30.5741	0/1:76:43,33:43:1532:33:1171:-82.819,0,-115.283	0/1:52:29,23:29:1027:23:824:-58.8298,0,-77.0886	0/0:60:60,0:60:2104:0:0:0,-18.0618,-189.625	0/1:76:34,42:34:1208:42:1499:-112.326,0,-86.1455	0/0:81:81,0:81:2868:0:0:0,-24.3834,-258.357	0/1:114:61,53:61:2142:53:1882:-135.34,0,-158.73	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.036	0/0:102:102,0:102:3626:0:0:0,-30.7051,-326.546	0/0:34:34,0:34:1195:0:0:0,-10.235,-107.855	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/1:119:60,59:60:2126:59:2108:-154.167,0,-155.785	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:6:3,3:3:104:3:104:-7.89663,0,-7.89663	0/0:157:157,0:157:5564:0:0:0,-47.2617,-500.879	0/1:43:25,18:25:879:18:644:-45.3463,0,-66.4825	.:.:.:.:.:.:.:.	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:69:29,40:29:1044:40:1428:-108.046,0,-73.5037	0/1:91:52,39:52:1872:39:1387:-97.7344,0,-141.365	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:203:88,115:88:3127:115:4114:-309.335,0,-220.548	0/0:126:126,0:126:4433:0:0:0,-37.9298,-399.145	0/0:43:43,0:43:1520:0:0:0,-12.9443,-137.093	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/1:110:62,48:62:2194:48:1706:-120.712,0,-164.612	0/0:116:115,1:115:4052:1:36:0,-31.3212,-361.27	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:106:43,63:43:1531:63:2221:-168.242,0,-106.173	0/0:83:83,0:83:2945:0:0:0,-24.9855,-265.284	0/0:70:70,0:70:2483:0:0:0,-21.0721,-223.724	0/0:146:146,0:146:5210:0:0:0,-43.9504,-469.039	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:76:76,0:76:2700:0:0:0,-22.8783,-243.246	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:79:78,1:78:2762:1:36:0,-20.1831,-245.224	0/0:86:86,0:86:3038:0:0:0,-25.8886,-273.652	0/1:184:99,85:99:3531:85:3052:-219.519,0,-262.61	0/0:51:51,0:51:1771:0:0:0,-15.3525,-159.667	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.887	0/1:42:26,16:26:932:16:576:-39.5317,0,-71.5556	0/1:131:67,64:67:2378:64:2288:-166.747,0,-174.842	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:54:27,27:27:968:27:968:-71.1817,0,-71.1817	0/1:63:32,31:32:1136:31:1095:-79.8942,0,-83.584	0/1:22:14,8:14:495:8:288:-19.6447,0,-38.2604	0/1:54:30,24:30:1053:24:843:-59.9324,0,-78.823	0/1:76:25,51:25:883:51:1816:-140.843,0,-56.9092	0/0:127:127,0:127:4497:0:0:0,-38.2308,-404.902	0/0:104:104,0:104:3658:0:0:0,-31.3071,-329.426
chr10	1847940	.	A	G	86397	PASS	AB=0.50873;ABP=7.93884;AC=49;AF=0.263441;AN=186;AO=3800;CIGAR=1X;DP=13663;DPB=13663;DPRA=1.26107;EPP=8254.61;EPPR=21392;GTI=0;LEN=1;MEANALT=1.06897;MQM=59.9726;MQMR=59.99;NS=93;NUMALT=1;ODDS=0.370959;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134745;QR=351583;RO=9858;RPL=1919;RPP=3.83546;RPPR=32.5175;RPR=1881;RUN=1;SAF=1919;SAP=3.83546;SAR=1881;SRF=4744;SRP=33.166;SRR=5114;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:84:34,50:34:1216:50:1771:-134.386,0,-84.46	0/0:140:140,0:140:4994:0:0:0,-42.1442,-449.608	0/1:202:89,113:89:3175:113:4019:-301.09,0,-225.166	0/1:341:189,152:189:6730:152:5400:-383.481,0,-503.122	0/1:88:29,59:29:1044:59:2082:-161.158,0,-67.7842	0/1:63:40,23:40:1432:23:828:-55.6887,0,-110.213	0/1:135:75,60:75:2671:60:2135:-151.779,0,-199.997	0/1:248:114,134:114:4058:134:4716:-349.945,0,-290.753	0/1:161:80,81:80:2837:81:2882:-211.15,0,-206.874	0/1:172:87,85:87:3103:85:3036:-221.693,0,-227.72	0/1:72:38,34:38:1342:34:1194:-86.0896,0,-99.4044	0/1:141:69,72:69:2424:72:2560:-188.206,0,-175.97	0/0:116:115,1:115:4111:1:36:0,-31.3212,-366.577	0/0:123:123,0:123:4379:0:0:0,-37.0267,-394.286	0/0:129:129,0:129:4632:0:0:0,-38.8329,-417.041	0/0:92:92,0:92:3251:0:0:0,-27.6948,-292.811	0/1:92:52,40:52:1844:40:1414:-99.8611,0,-138.546	0/0:71:70,1:70:2454:1:36:0,-17.7749,-217.515	0/1:59:33,26:33:1184:26:932:-66.4381,0,-89.1075	0/1:315:137,178:137:4886:178:6304:-472.619,0,-345.069	0/1:347:167,180:167:5982:180:6325:-464.89,0,-434.027	0/1:114:29,85:29:1040:85:3036:-239.153,0,-59.5969	0/0:123:121,2:121:4313:2:72:0,-30.19,-381.51	0/1:121:107,14:107:3789:14:504:-9.27346,0,-304.786	0/1:158:75,83:75:2684:83:2948:-217.979,0,-194.242	0/0:402:401,1:401:14330:1:36:0,-117.416,-1285.86	0/0:397:396,0:396:14130:0:0:0,-119.208,-1271.1	0/1:71:34,37:34:1216:37:1311:-96.9177,0,-88.3734	0/1:441:206,235:206:7362:235:8345:-618.299,0,-529.874	0/1:128:67,61:67:2393:61:2174:-157.393,0,-177.094	0/0:157:157,0:157:5573:0:0:0,-47.2617,-501.611	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:17:10,7:10:356:7:248:-17.5467,0,-27.2637	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:337:337,0:337:12010:0:0:0,-101.447,-1080.76	0/1:187:98,89:98:3499:89:3175:-229.671,0,-258.828	0/1:99:56,43:56:1984:43:1517:-107.019,0,-149.033	.:.:.:.:.:.:.:.	0/1:207:90,117:90:3211:117:4152:-311.551,0,-226.9	0/1:54:24,30:24:864:30:1059:-79.3648,0,-61.8269	0/1:215:100,115:100:3569:115:4088:-303.385,0,-256.695	0/1:149:63,86:63:2260:86:3029:-227.986,0,-158.809	0/0:120:120,0:120:4265:0:0:0,-36.1236,-384.03	0/1:162:88,74:88:3140:74:2656:-190.519,0,-234.052	0/0:174:173,1:173:6154:1:36:0,-48.7809,-550.362	0/1:255:106,148:106:3789:148:5211:-392.394,0,-264.514	0/0:148:148,0:148:5290:0:0:0,-44.5524,-476.235	0/0:200:200,0:200:7139:0:0:0,-60.206,-642.565	0/0:216:216,0:216:7728:0:0:0,-65.0225,-695.553	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:191:91,100:91:3256:100:3540:-261.313,0,-235.764	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:150:150,0:150:5335:0:0:0,-45.1545,-480.284	0/1:90:57,33:57:2027:33:1170:-78.5132,0,-155.609	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:150:72,77:72:2538:77:2724:-200.143,0,-183.456	0/1:162:80,82:80:2860:82:2912:-213.548,0,-208.871	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:346:172,174:172:6141:174:6167:-450.966,0,-448.631	0/0:290:288,2:288:10279:2:68:0,-80.841,-918.579	0/0:116:116,0:116:4135:0:0:0,-34.9195,-372.335	0/0:148:148,0:148:5292:0:0:0,-44.5524,-476.416	0/1:198:104,94:104:3700:94:3353:-242.383,0,-273.6	0/0:172:172,0:172:6127:0:0:0,-51.7772,-551.531	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/0:106:106,0:106:3771:0:0:0,-31.9092,-339.591	0/0:126:126,0:126:4467:0:0:0,-37.9298,-402.193	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:126:69,57:69:2438:57:1988:-141.257,0,-181.746	0/0:143:143,0:143:5083:0:0:0,-43.0473,-457.618	0/0:231:229,1:229:8175:1:36:0,-65.9285,-732.23	0/0:252:252,0:252:9027:0:0:0,-75.8596,-812.407	0/0:82:82,0:82:2927:0:0:0,-24.6845,-263.665	0/0:186:184,2:184:6556:2:68:0,-49.5339,-583.666	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:202:201,1:201:7169:1:36:0,-57.2098,-641.667	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/1:266:122,144:122:4379:144:5120:-380.873,0,-314.208	0/0:133:133,0:133:4731:0:0:0,-40.037,-425.949	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/1:135:73,62:73:2602:62:2202:-157.805,0,-193.788	0/1:238:113,125:113:4047:125:4407:-325.159,0,-292.772	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:116:59,57:59:2103:57:2012:-146.433,0,-154.606	0/1:122:72,50:72:2580:50:1776:-123.397,0,-195.724	0/1:52:33,19:33:1184:19:684:-46.2368,0,-91.2148	0/1:126:70,55:70:2496:55:1960:-138.687,0,-186.876	0/1:204:67,137:67:2387:137:4859:-376.055,0,-153.677	0/0:281:281,0:281:10050:0:0:0,-84.5894,-904.435	0/0:209:209,0:209:7438:0:0:0,-62.9153,-669.467
chr10	1848141	.	C	T	19749.2	PASS	AB=0.504925;ABP=3.50225;AC=49;AF=0.263441;AN=186;AO=1189;CIGAR=1X;DP=4175;DPB=4175;DPRA=1.42889;EPP=2576.21;EPPR=6474;GTI=1;LEN=1;MEANALT=1.01887;MQM=59.815;MQMR=59.9306;NS=93;NUMALT=1;ODDS=0.640498;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42492;QR=105820;RO=2984;RPL=0;RPP=2584.89;RPPR=6474;RPR=1189;RUN=1;SAF=1;SAP=2576.21;SAR=1188;SRF=0;SRP=6482.68;SRR=2984;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:11,2:11:383:2:72:-2.92333,0,-30.8899	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.079	0/1:77:36,41:36:1279:41:1476:-109.577,0,-92.2331	0/1:57:29,28:29:1040:28:1008:-73.8776,0,-76.7557	0/1:47:23,24:23:820:24:860:-63.5734,0,-59.9741	0/1:28:11,16:11:396:16:576:-43.6873,0,-27.4951	0/1:20:11,9:11:387:9:324:-23.4853,0,-29.1453	0/1:63:47,16:47:1680:16:561:-31.852,0,-132.522	0/1:36:23,13:23:815:13:460:-30.8983,0,-62.7463	0/1:61:22,39:22:788:39:1385:-106.585,0,-52.882	0/1:43:28,15:28:995:15:529:-34.9971,0,-76.9194	0/1:53:25,28:25:871:28:984:-72.9032,0,-62.7427	0/0:39:39,0:39:1378:0:0:0,-11.7402,-124.317	0/0:40:39,0:39:1370:0:0:0,-11.7402,-123.374	0/0:36:36,0:36:1251:0:0:0,-10.8371,-112.888	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/1:24:17,7:17:608:7:252:-15.8042,0,-47.8191	0/0:33:33,0:33:1158:0:0:0,-9.93399,-104.525	0/1:26:12,14:12:432:14:500:-37.5094,0,-31.3944	0/1:61:37,24:37:1324:24:864:-59.7197,0,-101.099	0/1:90:44,46:44:1564:46:1643:-121.065,0,-113.829	0/1:52:24,28:24:852:28:996:-74.1714,0,-61.3468	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.61	0/0:47:45,2:45:1608:2:72:0,-7.31169,-138.173	0/1:28:11,17:11:388:17:612:-46.9846,0,-26.8285	0/0:80:79,1:79:2812:1:36:0,-20.4841,-249.714	0/0:84:84,0:84:2968:0:0:0,-25.2865,-267.224	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	0/1:131:62,69:62:2216:69:2465:-182.669,0,-160.27	0/1:81:37,44:37:1324:44:1568:-117.026,0,-95.0787	0/0:36:36,0:36:1272:0:0:0,-10.8371,-114.783	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:112:111,1:111:3888:1:36:0,-30.1171,-346.249	0/1:84:42,42:42:1490:42:1484:-108.558,0,-109.107	0/1:48:26,22:26:908:22:784:-56.4345,0,-67.5831	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:52:32,20:32:1140:20:716:-48.9153,0,-87.2538	0/1:23:12,11:12:424:11:396:-29.0591,0,-31.5727	0/1:53:28,25:28:987:25:892:-64.6451,0,-73.1884	0/1:41:18,23:18:644:23:828:-62.5019,0,-45.9484	0/0:36:36,0:36:1235:0:0:0,-10.8371,-111.448	0/1:38:18,20:18:644:20:716:-53.3286,0,-46.8515	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.817	0/1:73:42,31:42:1508:31:1116:-78.7765,0,-114.039	0/0:39:39,0:39:1368:0:0:0,-11.7402,-123.416	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.509	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:76:25,51:25:887:51:1825:-141.622,0,-57.2698	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:76:75,1:75:2646:1:36:0,-19.28,-234.789	0/1:20:9,11:9:320:11:396:-29.9621,0,-23.1218	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:32:22,10:22:784:10:352:-22.3852,0,-61.251	0/1:78:29,49:29:1023:49:1747:-134.033,0,-68.9014	.:.:.:.:.:.:.:.	0/1:80:36,44:36:1284:44:1584:-118.768,0,-91.781	0/0:80:77,3:77:2706:3:108:0,-14.0072,-232.685	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:48:48,0:48:1695:0:0:0,-14.4494,-152.835	0/1:85:40,45:40:1412:45:1612:-119.783,0,-101.79	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:55:55,0:55:1942:0:0:0,-16.5566,-175.055	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:53:35,18:35:1247:18:648:-42.6973,0,-96.5795	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/1:99:39,60:39:1392:60:2145:-163.511,0,-95.777	0/0:68:68,0:68:2380:0:0:0,-20.47,-214.457	0/0:43:43,0:43:1496:0:0:0,-12.9443,-134.93	0/1:50:25,25:25:892:25:888:-64.8155,0,-65.5482	0/1:89:44,45:44:1572:45:1616:-118.938,0,-114.98	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:51:21,30:21:740:30:1076:-81.8003,0,-51.5708	0/1:35:18,17:18:619:17:599:-43.6997,0,-45.4958	0/1:21:5,16:5:167:16:568:-45.1302,0,-9.03678	0/1:69:40,29:40:1416:29:1036:-72.7828,0,-106.966	0/1:46:15,31:15:540:31:1109:-86.2738,0,-35.0892	0/0:39:39,0:39:1372:0:0:0,-11.7402,-123.776	0/0:72:72,0:72:2559:0:0:0,-21.6742,-230.56
chr10	1952475	.	A	G	106483	PASS	AB=0.533496;ABP=86.9469;AC=50;AF=0.265957;AN=188;AO=4660;CIGAR=1X;DP=17777;DPB=17777;DPRA=1.19983;EPP=10104.7;EPPR=28425.4;GTI=1;LEN=1;MEANALT=1.1129;MQM=59.8788;MQMR=59.8856;NS=94;NUMALT=1;ODDS=2.6702;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164446;QR=466329;RO=13109;RPL=2451;RPP=30.3;RPPR=6.11934;RPR=2209;RUN=1;SAF=2453;SAP=31.2096;SAR=2207;SRF=6489;SRP=5.85298;SRR=6620;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:11,17:11:396:17:589:-44.9045,0,-27.5432	0/0:405:405,0:405:14418:0:0:0,-121.917,-1297.24	0/1:290:119,171:119:4247:171:6082:-460.169,0,-295.092	0/1:391:214,177:214:7621:177:6256:-445.437,0,-568.19	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:34:7,27:7:252:27:955:-76.0298,0,-12.7939	0/1:294:149,143:149:5266:143:5075:-368.62,0,-385.811	0/1:278:134,144:134:4784:144:5126:-377.671,0,-347.006	0/1:143:57,86:57:2004:86:2993:-226.232,0,-137.58	0/1:272:131,140:131:4621:140:4890:-358.245,0,-334.156	0/1:100:40,60:40:1432:60:2111:-160.153,0,-99.0746	0/1:155:90,65:90:3204:65:2291:-159.792,0,-241.922	0/0:144:144,0:144:5109:0:0:0,-43.3483,-459.943	0/0:146:146,0:146:5200:0:0:0,-43.9504,-468.061	0/0:167:167,0:167:5926:0:0:0,-50.272,-533.45	0/0:123:122,1:122:4343:1:36:0,-33.4284,-387.443	0/1:171:90,81:90:3152:81:2835:-203.909,0,-232.427	0/0:141:140,1:140:4993:1:32:0,-39.2459,-446.213	0/1:103:59,44:59:2093:44:1553:-109.046,0,-157.626	0/1:334:149,185:149:5276:185:6551:-489.132,0,-374.434	0/1:361:176,185:176:6253:185:6552:-481.052,0,-453.789	1/1:38:0,38:0:0:38:1351:-121.661,-11.4391,0	0/0:116:115,1:115:4092:1:36:0,-31.3212,-364.861	0/0:230:222,8:222:7943:8:284:0,-43.3335,-687.866	0/1:51:15,36:15:540:36:1282:-100.32,0,-33.584	0/0:687:684,2:684:24417:2:72:0,-200.03,-2188.8	0/0:418:416,1:416:14821:1:32:0,-122.67,-1330.24	0/1:95:50,44:50:1800:44:1545:-110.801,0,-133.732	0/1:514:207,307:207:7380:307:10901:-825.408,0,-509.491	0/1:218:109,109:109:3912:109:3892:-284.745,0,-286.643	0/0:249:249,0:249:8862:0:0:0,-74.9565,-797.338	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:27:14,13:14:500:13:464:-33.9697,0,-37.2084	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4501	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:458:458,0:458:16271:0:0:0,-137.872,-1464.04	0/1:213:108,105:108:3819:105:3667:-266.109,0,-279.772	0/1:153:79,74:79:2815:74:2598:-188.006,0,-207.517	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:291:145,146:145:5187:146:5161:-376.99,0,-379.36	0/1:76:46,30:46:1639:30:1029:-70.0353,0,-124.913	0/1:103:24,79:24:856:79:2776:-218.991,0,-46.355	0/1:181:99,82:99:3508:82:2878:-204.77,0,-261.444	0/0:137:137,0:137:4828:0:0:0,-41.2411,-434.681	0/1:82:35,47:35:1239:47:1672:-126.082,0,-87.123	0/0:127:127,0:127:4455:0:0:0,-38.2308,-401.078	0/1:303:152,151:152:5424:151:5363:-391.586,0,-396.85	0/0:200:200,0:200:7112:0:0:0,-60.206,-640.139	0/0:376:375,1:375:13338:1:36:0,-109.589,-1196.58	0/0:294:294,0:294:10467:0:0:0,-88.5028,-941.324	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:341:128,213:128:4545:213:7551:-576.96,0,-306.558	0/0:100:100,0:100:3568:0:0:0,-30.103,-321.313	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/0:270:270,0:270:9588:0:0:0,-81.2781,-862.741	0/1:74:33,41:33:1164:41:1444:-107.978,0,-82.788	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.5714	0/1:21:9,12:9:312:12:432:-32.8996,0,-22.0937	0/1:157:53,104:53:1856:104:3685:-284.59,0,-120.053	0/1:220:119,101:119:4259:101:3541:-252.674,0,-317.261	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:395:188,207:188:6646:207:7302:-538.328,0,-479.312	0/0:427:425,2:425:15142:2:72:0,-121.703,-1355.66	0/0:125:125,0:125:4467:0:0:0,-37.6287,-400.644	0/0:156:156,0:156:5479:0:0:0,-46.9607,-493.239	0/1:304:149,155:149:5304:155:5443:-398.477,0,-385.974	0/0:315:311,4:311:11130:4:144:0,-81.5108,-988.23	0/0:71:70,1:70:2477:1:32:0,-18.1738,-219.755	0/0:182:182,0:182:6460:0:0:0,-54.7875,-581.398	0/0:203:203,0:203:7203:0:0:0,-61.1091,-648.002	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:89:31,58:31:1098:58:2064:-159.24,0,-72.3369	0/0:242:242,0:242:8625:0:0:0,-72.8493,-776.153	0/0:365:365,0:365:12954:0:0:0,-109.876,-1165.65	0/0:367:366,1:366:13069:1:36:0,-106.88,-1172.42	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:322:322,0:322:11462:0:0:0,-96.9317,-1031.27	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:296:293,2:293:10448:2:72:0,-82.2271,-933.451	0/0:177:177,0:177:6275:0:0:0,-53.2823,-564.818	0/1:438:160,278:160:5724:278:9787:-748.922,0,-383.156	0/0:212:210,2:210:7478:2:72:0,-56.9816,-666.228	0/0:121:121,0:121:4311:0:0:0,-36.4246,-388.165	0/1:208:116,92:116:4122:92:3249:-230.012,0,-308.552	0/1:313:151,162:151:5368:162:5678:-416.833,0,-389.031	0/0:106:105,0:105:3742:0:0:0,-31.6081,-336.596	0/1:171:87,84:87:3102:84:2947:-213.988,0,-227.918	0/1:156:77,79:77:2760:79:2759:-201.59,0,-201.681	0/1:83:42,41:42:1484:41:1448:-105.63,0,-108.847	0/1:173:81,92:81:2881:92:3184:-234.702,0,-207.371	0/1:151:50,101:50:1778:101:3566:-275.648,0,-114.846	0/0:300:300,0:300:10633:0:0:0,-90.309,-956.183	0/0:256:256,0:256:9095:0:0:0,-77.0637,-818.466
chr10	1952481	.	A	G	346330	PASS	AB=0.463633;ABP=101.722;AC=138;AF=0.734043;AN=188;AO=13059;CIGAR=1X;DP=17734;DPB=17734;DPRA=5.43748;EPP=28316.9;EPPR=10102.6;GTI=1;LEN=1;MEANALT=1.08602;MQM=59.9104;MQMR=59.8768;NS=94;NUMALT=1;ODDS=6.5719;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=458809;QR=164278;RO=4667;RPL=6314;RPP=33.899;RPPR=34.2219;RPR=6745;RUN=1;SAF=6315;SAP=33.6129;SAR=6744;SRF=2465;SRP=35.1934;SRR=2202;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:18,12:18:648:12:420:-29.0988,0,-49.621	1/1:412:0,412:0:0:412:14485:-1303.39,-124.024,0	0/1:287:170,117:170:5970:117:4047:-278.027,0,-451.011	0/1:391:178,213:178:6265:213:7496:-556.973,0,-446.254	0/1:12:9,3:9:303:3:104:-6.09045,0,-23.9844	0/1:33:26,7:26:887:7:240:-12.0007,0,-70.2046	0/1:297:149,147:149:5243:147:5140:-373.392,0,-382.2	0/1:277:146,131:146:5168:131:4624:-332.924,0,-381.573	0/1:142:87,55:87:3015:55:1889:-127.536,0,-228.514	0/1:264:138,126:138:4886:126:4391:-315.9,0,-360.342	0/1:95:59,36:59:2065:36:1279:-86.8146,0,-157.522	0/1:153:67,86:67:2324:86:2992:-223.459,0,-163.362	1/1:149:0,149:0:0:149:5200:-468.125,-44.8535,0	1/1:142:0,142:0:0:142:4939:-444.667,-42.7463,0	1/1:164:0,164:0:0:164:5711:-514.112,-49.3689,0	1/1:122:0,122:0:0:122:4301:-387.269,-36.7257,0	0/1:168:79,89:79:2784:89:3110:-229.556,0,-200.224	1/1:137:1,136:1:32:136:4764:-425.726,-38.0418,0	0/1:105:45,60:45:1608:60:2109:-158.465,0,-113.392	0/1:333:187,146:187:6630:146:5123:-360.976,0,-496.532	0/1:370:189,181:189:6660:181:6266:-452.634,0,-488.104	0/0:35:35,0:35:1236:0:0:0,-10.536,-111.31	1/1:117:1,116:1:36:116:4111:-366.571,-31.6222,0	1/1:229:8,221:8:275:221:7840:-680.212,-43.8524,0	0/1:53:38,15:38:1327:15:523:-31.4439,0,-103.762	1/1:693:1,691:1:36:691:24341:-2186.2,-204.999,0	1/1:408:0,408:0:0:408:14404:-1296.13,-122.82,0	0/1:97:47,50:47:1626:50:1752:-128.761,0,-117.424	0/1:509:302,207:302:10665:207:7282:-502.189,0,-806.539	0/1:216:108,108:108:3813:108:3807:-277.806,0,-278.242	1/1:254:0,254:0:0:254:8924:-803.137,-76.4616,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:27:13,14:13:431:14:491:-36.3933,0,-30.9813	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:13:0,13:0:0:13:464:-42.0917,-3.91339,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:459:0,459:0:0:459:16081:-1446.98,-138.173,0	0/1:216:107,109:107:3769:109:3838:-280.582,0,-274.387	0/1:157:76,81:76:2674:81:2811:-205.956,0,-193.635	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:294:148,146:148:5205:146:5191:-378.822,0,-380.051	0/1:72:30,42:30:1060:42:1464:-110.374,0,-74.0371	0/1:102:77,25:77:2696:25:896:-50.2553,0,-212.132	0/1:181:81,100:81:2850:100:3490:-259.826,0,-202.253	1/1:134:0,134:0:0:134:4685:-421.818,-40.338,0	0/1:81:48,33:48:1699:33:1133:-77.8799,0,-128.812	1/1:128:0,128:0:0:128:4524:-407.16,-38.5318,0	0/1:301:147,154:147:5145:154:5458:-400.744,0,-372.585	1/1:198:0,198:0:0:198:6943:-624.943,-59.6039,0	1/1:376:2,374:2:72:374:13227:-1183.41,-106.351,0	1/1:287:0,286:0:0:286:10049:-904,-86.0946,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:346:216,130:216:7653:130:4576:-307.843,0,-584.633	1/1:99:0,99:0:0:99:3518:-316.825,-29.802,0	0/1:16:11,5:11:380:5:180:-11.7356,0,-29.7155	1/1:270:0,270:0:0:270:9456:-851.01,-81.2781,0	0/1:74:41,33:41:1455:33:1180:-84.2318,0,-108.951	0/1:14:3,11:3:108:11:396:-31.7683,0,-5.86075	0/1:21:12,9:12:428:9:324:-23.1842,0,-32.5372	0/1:160:108,52:108:3826:52:1832:-116.975,0,-296.371	0/1:219:99,120:99:3492:120:4195:-311.812,0,-248.567	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:395:210,185:210:7415:185:6523:-468.255,0,-548.5	1/1:431:2,429:2:72:429:15175:-1358.65,-122.907,0	1/1:121:0,121:0:0:121:4274:-383.296,-36.4246,0	1/1:156:0,156:0:0:156:5475:-492.886,-46.9607,0	0/1:307:158,149:158:5557:149:5319:-386.404,0,-407.45	1/1:317:4,313:4:144:313:11079:-983.7,-82.1129,0	1/1:71:1,70:1:36:70:2465:-218.504,-17.7749,0	1/1:178:0,177:0:0:177:6220:-559.313,-53.2823,0	1/1:203:1,202:1:36:202:7119:-637.112,-57.5108,0	1/1:29:0,29:0:0:29:1001:-90.3969,-8.72987,0	0/1:87:57,30:57:1998:30:1060:-69.5217,0,-153.896	1/1:240:0,240:0:0:240:8366:-752.955,-72.2472,0	1/1:361:0,360:0:0:360:12545:-1128.66,-108.371,0	1/1:369:1,368:1:36:368:12968:-1163.35,-107.482,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:320:0,320:0:0:320:11274:-1014.42,-96.3296,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:299:2,296:2:72:296:10412:-930.178,-83.23,0	1/1:171:0,171:0:0:171:6048:-544.413,-51.4761,0	0/1:432:272,160:272:9544:160:5592:-373.369,0,-728.885	1/1:216:0,215:0:0:215:7574:-681.354,-64.7215,0	1/1:117:0,117:0:0:117:4100:-369.187,-35.2205,0	0/1:206:91,115:91:3209:115:4052:-302.859,0,-227.016	0/1:303:154,149:154:5416:149:5182:-375.319,0,-396.328	1/1:105:0,105:0:0:105:3669:-330.413,-31.6082,0	0/1:170:84,86:84:2953:86:2999:-218.961,0,-214.829	0/1:156:80,76:80:2848:76:2646:-191.425,0,-209.598	0/1:85:43,42:43:1497:42:1452:-105.375,0,-109.364	0/1:174:94,79:94:3273:79:2755:-195.759,0,-242.394	0/1:149:99,50:99:3479:50:1737:-111.756,0,-268.47	1/1:305:0,305:0:0:305:10644:-957.895,-91.8142,0	1/1:254:1,253:1:36:253:8844:-792.362,-72.8633,0
chr10	2013465	.	G	A	12509.9	PASS	AB=0.191881;ABP=8555.08;AC=75;AF=0.398936;AN=188;AO=2095;CIGAR=1X;DP=11854;DPB=11854;DPRA=17.517;EPP=4552.24;EPPR=21192.2;GTI=33;LEN=1;MEANALT=1.01111;MQM=59.1637;MQMR=59.9808;NS=94;NUMALT=1;ODDS=0.654508;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74732;QR=349180;RO=9758;RPL=0;RPP=4552.24;RPPR=934.557;RPR=2095;RUN=1;SAF=2095;SAP=4552.24;SAR=0;SRF=5902;SRP=934.557;SRR=3856;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:77:72,5:72:2565:5:180:0,-6.62724,-214.547	0/0:117:111,6:111:3961:6:216:0,-15.4408,-336.674	0/1:140:117,23:117:4174:23:820:-31.9607,0,-333.696	0/1:258:190,68:190:6824:68:2429:-141.196,0,-536.562	0/1:88:73,15:73:2612:15:525:-21.0589,0,-208.837	0/1:90:70,20:70:2482:20:716:-37.6483,0,-196.538	0/1:230:193,37:193:6920:37:1317:-49.5554,0,-553.628	0/1:180:155,25:155:5564:25:900:-26.9007,0,-446.688	0/1:116:95,21:95:3378:21:737:-31.6304,0,-269.314	0/1:123:106,17:106:3759:17:608:-18.0253,0,-301.481	0/1:41:32,9:32:1152:9:309:-15.7961,0,-91.6479	0/1:97:69,28:69:2484:28:1004:-61.4353,0,-194.613	0/1:77:64,13:64:2292:13:468:-19.2589,0,-183.362	0/0:65:61,4:61:2188:4:144:0,-6.25333,-183.872	0/1:80:62,18:62:2220:18:644:-34.2082,0,-175.982	0/1:52:43,9:43:1536:9:316:-13.1228,0,-122.609	0/1:72:64,8:64:2300:8:288:-4.59325,0,-185.587	0/1:52:41,11:41:1472:11:392:-19.9517,0,-117.123	0/0:33:32,1:32:1152:1:36:0,-6.33571,-100.392	0/1:288:239,49:239:8514:49:1756:-71.5722,0,-679.565	0/1:138:120,18:120:4281:18:633:-15.1231,0,-343.925	0/1:168:132,36:132:4710:36:1281:-65.0028,0,-373.484	0/1:101:88,13:88:3129:13:468:-12.0556,0,-251.432	0/0:176:163,13:163:5814:13:468:0,-10.5548,-480.944	0/1:104:93,11:93:3332:11:396:-4.67563,0,-268.79	0/1:437:392,45:392:14022:45:1620:-14.361,0,-1130.2	0/1:303:240,63:240:8585:63:2245:-111.043,0,-681.434	0/1:32:23,9:23:828:9:324:-19.8729,0,-65.2112	0/1:330:297,33:297:10621:33:1188:-7.8887,0,-856.461	0/1:145:121,24:121:4328:24:864:-34.1177,0,-345.99	0/0:165:154,11:154:5509:11:396:0,-13.6872,-459.952	0/1:10:2,8:2:72:8:288:-23.2478,0,-3.82642	0/0:19:18,1:18:648:1:36:0,-2.12129,-55.0536	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:209:175,34:175:6262:34:1224:-47.5518,0,-500.756	0/1:316:276,40:276:9893:40:1440:-34.7405,0,-795.182	0/0:49:45,4:45:1597:4:144:0,-1.43685,-130.705	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:223:180,43:180:6456:43:1521:-69.5955,0,-513.995	0/1:46:37,9:37:1313:9:309:-14.2887,0,-104.622	0/1:192:161,31:161:5788:31:1112:-42.5545,0,-463.233	0/1:67:58,9:58:2080:9:324:-9.33685,0,-167.301	0/1:59:47,12:47:1692:12:417:-20.0841,0,-134.806	0/1:173:140,33:140:5005:33:1135:-50.2987,0,-398.518	0/0:161:149,12:149:5344:12:432:0,-9.26356,-441.89	0/1:328:256,72:256:9177:72:2554:-131.193,0,-727.16	0/1:166:125,41:125:4466:41:1442:-80.0786,0,-352.136	0/0:154:140,14:140:5020:14:500:0,-1.05333,-406.64	0/1:262:210,52:210:7536:52:1853:-88.1757,0,-599.408	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:227:177,50:177:6321:50:1785:-92.5742,0,-500.648	0/1:51:44,7:44:1580:7:252:-7.51673,0,-127.13	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:142:120,22:120:4288:22:792:-28.7201,0,-343.352	0/1:87:68,19:68:2444:19:680:-35.3396,0,-194.02	0/1:7:6,1:6:216:1:36:-1.39549,0,-17.6833	0/1:18:5,13:5:180:13:468:-37.0411,0,-11.1335	0/0:112:102,10:102:3660:10:356:0,-1.34484,-297.233	0/1:168:125,43:125:4461:43:1540:-88.311,0,-351.087	0/1:4:3,1:3:108:1:36:-2.39315,0,-8.87105	0/1:357:251,105:251:8996:105:3719:-225.738,0,-702.091	0/1:281:221,60:221:7920:60:2141:-108.156,0,-628.234	0/1:84:70,14:70:2508:14:504:-20.4116,0,-200.686	0/1:125:100,25:100:3592:25:896:-42.6488,0,-285.857	0/1:233:197,36:197:7049:36:1277:-45.0493,0,-564.33	0/1:186:153,33:153:5458:33:1169:-49.5214,0,-434.985	0/1:17:11,6:11:396:6:216:-14.6688,0,-30.8652	0/1:67:55,12:55:1968:12:432:-18.8156,0,-157.226	0/1:148:123,25:123:4393:25:900:-36.757,0,-350.99	0/1:26:15,11:15:540:11:392:-27.7933,0,-41.1098	0/1:168:152,16:152:5440:16:576:-1.50465,0,-439.156	0/1:59:45,14:45:1620:14:504:-27.9358,0,-128.329	0/0:153:139,14:139:4953:14:500:0,-0.723904,-400.562	0/1:244:195,49:195:6977:49:1741:-83.5188,0,-554.542	0/1:147:121,26:121:4310:26:921:-37.8002,0,-343.824	0/1:97:59,38:59:2108:38:1368:-93.9557,0,-160.789	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:148:125,23:125:4500:23:828:-29.9059,0,-360.613	0/1:150:119,31:119:4261:31:1086:-52.7888,0,-338.512	0/1:288:216,72:216:7720:72:2561:-143.927,0,-607.911	0/1:155:129,26:129:4628:26:936:-37.5263,0,-370.022	0/1:58:42,16:42:1512:16:572:-34.3537,0,-118.915	0/0:79:74,5:74:2652:5:180:0,-7.2293,-222.374	0/1:158:141,17:141:5037:17:612:-7.84734,0,-405.913	0/0:62:59,3:59:2097:3:108:0,-8.58869,-178.909	0/1:102:77,25:77:2760:25:885:-49.2344,0,-217.936	0/1:92:72,20:72:2584:20:720:-37.4225,0,-205.114	0/0:31:29,2:29:1044:2:72:0,-2.49521,-87.4381	0/1:83:74,9:74:2633:9:324:-4.52037,0,-212.231	0/1:79:69,10:69:2480:10:360:-8.96057,0,-199.672	0/1:192:113,79:113:4048:79:2828:-196.92,0,-306.705	0/1:113:90,23:90:3232:23:824:-40.3346,0,-257.085
chr10	2013502	.	ACAA	ATAA,GTAG	161606	PASS	AB=0.730911,0.265774;ABP=3636.28,3741.33;AC=102,86;AF=0.542553,0.457447;AN=188;AO=5931,2098;CIGAR=1M1X2M,2X1M1X;DP=8055;DPB=8055.75;DPRA=0,17.8556;EPP=12349.1,4524.08;EPPR=0;GTI=10;LEN=1,4;MEANALT=2.2234,2.27778;MQM=59.9858,59.1783;MQMR=0;NS=94;NUMALT=2;ODDS=4944.83;PAIRED=0,0;PAIREDR=0;PAO=1.5,0;PQA=0,0;PQR=0;PRO=1.5;QA=211934,73802;QR=0;RO=0;RPL=5868,2094;RPP=12340.6,4524.08;RPPR=0;RPR=63,4;RUN=1,1;SAF=5930,2098;SAP=12873.3,4558.76;SAR=1,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:68:0,63,5:0:0:63,5:2249,162:-202.345,-18.9649,0,-189.278,-5.571,-187.772	1/1:81:0,75,6:0:0:75,6:2676,215:-240.703,-22.5773,0,-223.179,-4.69507,-221.372	1/2:94:0,71,23:0:0:71,23:2547,820:-274.931,-67.1811,-45.808,-208.107,0,-201.183	1/2:168:0,100,68:0:0:100,68:3593,2402:-489.084,-195.967,-165.864,-293.473,0,-273.003	1/2:75:0,60,14:0:0:60,14:2160,494:-216.473,-40.2223,-22.1605,-176.248,0,-172.034	1/2:85:0,64,19:0:0:64,19:2296,667:-241.578,-54.2929,-35.027,-187.314,0,-181.595	1/2:175:0,137,38:0:0:137,38:4883,1335:-506.983,-108.956,-67.7149,-398.379,0,-386.94	1/2:126:0,100,25:0:0:100,25:3550,878:-360.476,-71.223,-41.12,-289.244,0,-281.719	1/2:101:0,81,20:0:0:81,20:2885,700:-292.361,-57.2095,-32.826,-235.502,0,-229.481	1/2:75:0,57,18:0:0:57,18:2044,628:-218.142,-51.4201,-34.2614,-167.073,0,-161.655	1/2:27:0,18,9:0:0:18,9:644,320:-78.9468,-26.4309,-21.0123,-52.8721,0,-50.1628	1/2:63:0,35,28:0:0:35,28:1256,989:-183.334,-80.8804,-70.3444,-102.809,0,-94.3804	1/2:44:0,31,13:0:0:31,13:1108,455:-127.697,-37.3498,-28.0178,-90.6991,0,-86.7857	1/2:34:0,30,4:0:0:30,4:1076,144:-99.8718,-12.1095,-3.0786,-88.122,0,-86.9178	1/2:55:0,37,18:0:0:37,18:1324,641:-160.568,-52.6009,-41.4628,-108.324,0,-102.905	1/2:34:0,24,10:0:0:24,10:836,348:-96.6246,-28.6426,-21.4179,-68.33,0,-65.3197	1/2:44:0,36,8:0:0:36,8:1292,285:-128.976,-23.5864,-12.7493,-105.747,0,-103.338	1/2:29:0,18,11:0:0:18,11:644,372:-83.0184,-30.4918,-25.0732,-52.8721,0,-49.5607	1/1:24:0,23,1:0:0:23,1:828,36:-74.4843,-6.92369,0,-71.5469,-3.62645,-71.2458	1/2:184:0,135,49:0:0:135,49:4822,1725:-533.887,-140.747,-100.107,-393.493,0,-378.743	1/2:109:0,91,18:0:0:91,18:3257,634:-317.343,-51.7395,-24.3458,-265.955,0,-260.537	1/2:116:0,80,36:0:0:80,36:2853,1262:-335.609,-103.037,-78.955,-232.924,0,-222.087	1/2:84:0,71,13:0:0:71,13:2537,460:-244.674,-37.8217,-16.4485,-207.206,0,-203.293	1/2:131:0,118,13:0:0:118,13:4203,462:-380.533,-37.9696,-2.44808,-342.919,0,-339.005	1/2:81:0,71,10:0:0:71,10:2537,352:-235.861,-29.0076,-7.63445,-207.206,0,-204.196	1/2:293:0,246,47:0:0:246,47:8798,1640:-851.005,-133.603,-59.5501,-717.752,0,-703.603	1/2:195:0,131,64:0:0:131,64:4681,2240:-564.21,-182.547,-143.112,-382.015,0,-362.749	1/2:21:0,12,9:0:0:12,9:432,322:-61.8653,-26.615,-23.0026,-35.6088,0,-32.8996	1/2:205:0,172,33:0:0:172,33:6126,1162:-594.262,-94.951,-43.1738,-499.663,0,-489.729	1/2:99:0,75,24:0:0:75,24:2650,854:-285.443,-69.6406,-47.0633,-216.156,0,-208.932	1/2:98:0,87,11:0:0:87,11:3116,369:-284.36,-30.2205,-4.03086,-254.477,0,-251.166	1/2:9:0,1,8:0:0:1,8:36,287:-26.6965,-23.7589,-23.4579,-3.29724,0,-0.889005	1/1:17:0,16,1:0:0:16,1:576,36:-51.8152,-4.81648,0,-48.8777,-1.51924,-48.5767	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:128:0,93,34:0:0:93,34:3324,1217:-370.327,-99.3006,-71.3048,-271.082,0,-260.847	1/2:240:0,199,40:0:0:199,40:7119,1405:-694.849,-114.339,-54.434,-580.522,0,-568.48	1/2:30:0,26,4:0:0:26,4:922,144:-87.2207,-12.1095,-4.28272,-75.4703,0,-74.2662	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:157:0,113,44:0:0:113,44:4060,1558:-458.191,-126.976,-92.9599,-331.569,0,-318.324	1/2:34:0,25,9:0:0:25,9:900,315:-99.4178,-25.975,-18.4492,-73.7953,0,-71.086	1/2:147:0,115,32:0:0:115,32:4120,1118:-427.275,-91.2599,-56.6414,-336.366,0,-326.733	1/2:41:0,31,9:0:0:31,9:1116,317:-116.867,-25.8016,-16.4697,-91.0599,0,-88.3507	1/2:39:0,27,12:0:0:27,12:941,416:-110.67,-34.1454,-26.0176,-76.872,0,-73.2596	1/2:128:0,95,32:0:0:95,32:3401,1111:-367.489,-90.1339,-61.5361,-277.346,0,-267.713	1/2:103:0,91,12:0:0:91,12:3259,425:-300.74,-34.9577,-7.56401,-266.136,0,-262.524	1/2:212:0,137,74:0:0:137,74:4898,2603:-611.226,-211.851,-170.61,-399.448,0,-377.172	1/2:126:0,84,41:0:0:84,41:3007,1447:-363.008,-117.789,-92.5022,-245.214,0,-232.872	1/2:75:0,60,14:0:0:60,14:2133,494:-214.019,-40.1982,-22.1364,-173.815,0,-169.601	1/2:202:0,149,53:0:0:149,53:5339,1865:-587.606,-152.17,-107.317,-435.789,0,-419.835	1/2:4:0,2,2:0:0:2,2:72,71:-12.0173,-6.14,-5.53794,-6.23466,0,-5.6326	1/2:154:0,101,52:0:0:101,52:3623,1828:-444.198,-148.682,-118.278,-295.51,0,-279.857	1/2:42:0,35,7:0:0:35,7:1233,232:-119.459,-19.0591,-8.52301,-100.735,0,-98.6274	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/2:99:0,77,22:0:0:77,22:2764,770:-288.332,-62.8616,-39.6823,-225.822,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chr10	2021574	.	T	C	25053.6	PASS	AB=0.445422;ABP=97.1108;AC=49;AF=0.260638;AN=188;AO=1633;CIGAR=1X;DP=7214;DPB=7214;DPRA=1.18422;EPP=3549.02;EPPR=12106.8;GTI=2;LEN=1;MEANALT=1.03704;MQM=59.8794;MQMR=59.9609;NS=94;NUMALT=1;ODDS=0.636666;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57463;QR=198581;RO=5578;RPL=1633;RPP=3549.02;RPPR=12106.8;RPR=0;RUN=1;SAF=1633;SAP=3549.02;SAR=0;SRF=5578;SRP=12115.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:13,14:13:468:14:487:-36.015,0,-34.3318	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.769	0/1:131:76,55:76:2715:55:1929:-134.447,0,-205.158	0/1:177:95,82:95:3390:82:2912:-208.714,0,-252.032	0/1:52:42,10:42:1508:10:360:-17.0907,0,-120.361	0/1:45:23,22:23:828:22:774:-56.4298,0,-61.2978	0/1:63:41,22:41:1472:22:769:-50.5636,0,-113.811	0/1:116:73,43:73:2607:43:1483:-98.8374,0,-199.958	0/1:82:48,34:48:1716:34:1203:-83.8895,0,-130.041	0/1:70:35,35:35:1248:35:1250:-91.7322,0,-91.5528	0/1:52:23,29:23:807:29:1028:-77.1771,0,-57.2956	0/1:53:24,29:24:839:29:1010:-75.2547,0,-59.8727	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:50:50,0:50:1765:0:0:0,-15.0515,-159.131	0/1:81:55,26:55:1964:26:885:-55.5761,0,-152.652	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:25:13,12:13:455:12:428:-31.3331,0,-33.7562	0/1:84:40,44:40:1440:44:1543:-113.872,0,-104.589	0/1:68:35,33:35:1243:33:1150:-83.2616,0,-91.7038	0/1:44:21,23:21:756:23:806:-59.6126,0,-55.1219	0/0:100:100,0:100:3531:0:0:0,-30.103,-317.986	0/0:96:88,8:88:3139:8:284:0,-2.99552,-256.833	0/1:35:18,17:18:633:17:612:-44.8774,0,-46.759	0/0:373:371,2:371:13272:2:72:0,-105.447,-1186.23	0/0:141:141,0:141:5000:0:0:0,-42.4452,-450.148	0/1:21:15,6:15:536:6:216:-13.4689,0,-42.2532	0/1:154:88,66:88:3156:66:2355:-165.847,0,-237.906	0/1:119:81,38:81:2904:38:1321:-83.3621,0,-225.773	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.205	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:10:5,5:5:171:5:168:-12.4398,0,-12.7152	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:164:164,0:164:5851:0:0:0,-49.3689,-526.701	0/1:149:92,57:92:3246:57:2027:-137.849,0,-247.508	0/1:59:20,39:20:720:39:1375:-106.284,0,-47.368	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:97:55,42:55:1962:42:1466:-103.031,0,-147.654	0/1:36:29,7:29:1036:7:252:-12.1919,0,-82.7168	0/1:74:30,44:30:1055:44:1555:-117.963,0,-72.9838	0/1:50:19,31:19:662:31:1084:-82.8146,0,-44.8509	0/0:53:53,0:53:1877:0:0:0,-15.9546,-169.12	0/1:90:56,34:56:2003:34:1216:-82.6539,0,-153.45	0/0:110:110,0:110:3887:0:0:0,-33.1133,-350.018	0/1:109:59,50:59:2088:50:1796:-129.11,0,-155.376	0/0:115:115,0:115:4109:0:0:0,-34.6184,-369.994	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/0:210:209,0:209:7472:0:0:0,-62.9153,-672.162	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:108:67,41:67:2396:41:1460:-99.1848,0,-183.386	0/0:41:41,0:41:1449:0:0:0,-12.3422,-130.704	0/1:11:2,9:2:68:9:300:-24.0108,0,-3.14638	0/0:132:132,0:132:4674:0:0:0,-39.736,-420.823	0/1:42:31,11:31:1108:11:366:-20.611,0,-87.3854	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:14:11,3:11:388:3:108:-5.86075,0,-31.0429	0/1:69:35,34:35:1251:34:1173:-85.0982,0,-92.1232	0/1:127:71,56:71:2465:56:1934:-136.099,0,-183.87	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:144:76,67:76:2696:67:2392:-172.249,0,-199.59	0/0:182:181,1:181:6442:1:36:0,-51.1892,-576.269	0/0:86:85,1:85:2992:1:36:0,-22.2903,-265.912	0/0:60:60,0:60:2123:0:0:0,-18.0618,-191.338	0/1:132:66,66:66:2329:66:2331:-170.311,0,-169.638	0/0:111:111,0:111:3974:0:0:0,-33.4143,-357.849	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4891	0/0:128:128,0:128:4560:0:0:0,-38.5318,-410.566	0/0:80:80,0:80:2835:0:0:0,-24.0824,-255.387	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:108:60,48:60:2152:48:1694:-120.233,0,-161.436	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:140:140,0:140:4981:0:0:0,-42.1442,-448.429	0/0:77:77,0:77:2750:0:0:0,-23.1793,-247.741	0/0:106:106,0:106:3767:0:0:0,-31.9092,-339.229	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:64:63,1:63:2243:1:36:0,-15.6676,-198.535	0/1:69:39,30:39:1381:30:1064:-75.3006,0,-103.816	0/1:178:105,73:105:3732:73:2550:-176.164,0,-282.497	0/0:93:93,0:93:3275:0:0:0,-27.9958,-294.971	0/0:42:42,0:42:1482:0:0:0,-12.6433,-133.673	0/1:48:25,23:25:896:23:771:-55.2454,0,-66.5109	0/1:102:58,44:58:2071:44:1534:-107.644,0,-155.955	0/0:45:45,0:45:1597:0:0:0,-13.5463,-144.018	0/1:62:29,33:29:1040:33:1150:-85.1406,0,-75.2505	0/1:56:26,30:26:928:30:1054:-78.3123,0,-66.8743	0/1:39:15,24:15:540:24:860:-65.9798,0,-37.1964	0/1:90:52,37:52:1837:37:1302:-90.4753,0,-138.605	0/1:59:20,39:20:707:39:1388:-107.458,0,-46.1938	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:76:76,0:76:2664:0:0:0,-22.8783,-240.004
chr10	2053423	.	C	A	37519.6	PASS	AB=0.333446;ABP=2142.64;AC=49;AF=0.260638;AN=188;AO=2971;CIGAR=1X;DP=19126;DPB=19126;DPRA=0.875819;EPP=6454.45;EPPR=35048.4;GTI=7;LEN=1;MEANALT=1.09091;MQM=53.5988;MQMR=59.9749;NS=94;NUMALT=1;ODDS=2.58831;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104402;QR=574442;RO=16147;RPL=0;RPP=6454.45;RPPR=3.09435;RPR=2971;RUN=1;SAF=0;SAP=6454.45;SAR=2971;SRF=8088;SRP=3.1234;SRR=8059;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:49,21:49:1738:21:756:-46.9408,0,-135.601	0/0:421:421,0:421:14968:0:0:0,-126.734,-1346.85	0/1:365:263,102:263:9330:102:3565:-207.885,0,-729.538	0/1:451:288,163:288:10295:163:5652:-370.623,0,-790.706	0/1:144:96,48:96:3407:48:1687:-107.876,0,-263.495	0/1:85:67,18:67:2391:18:636:-31.335,0,-189.858	0/1:241:169,72:169:5975:72:2524:-154.04,0,-465.309	0/1:354:209,145:209:7464:145:5073:-348.159,0,-565.238	0/1:108:88,20:88:3102:20:698:-30.4209,0,-246.895	0/1:183:134,49:134:4751:49:1746:-101.322,0,-372.661	0/1:132:78,54:78:2768:54:1910:-132.034,0,-209.627	0/1:125:80,45:80:2863:45:1524:-99.1816,0,-219.907	0/0:137:137,0:137:4891:0:0:0,-41.2411,-440.342	0/0:158:158,0:158:5588:0:0:0,-47.5627,-503.046	0/0:136:136,0:136:4838:0:0:0,-40.9401,-435.572	0/0:75:75,0:75:2651:0:0:0,-22.5772,-238.838	0/1:110:74,36:74:2625:36:1280:-81.469,0,-203.383	0/0:97:97,0:97:3430:0:0:0,-29.1999,-308.907	0/1:93:58,35:58:2031:35:1244:-83.7977,0,-155.064	0/1:375:266,106:266:9503:106:3731:-223.281,0,-742.882	0/1:219:158,61:158:5600:61:2127:-123.492,0,-438.198	0/1:102:55,47:55:1925:47:1631:-116.229,0,-142.817	0/0:148:148,0:148:5240:0:0:0,-44.5524,-471.739	0/0:292:288,4:288:10244:4:144:0,-74.7296,-908.718	0/1:157:135,22:135:4824:22:747:-20.2045,0,-387.054	0/0:809:809,0:809:28799:0:0:0,-243.533,-2591.07	0/0:616:615,0:615:21953:0:0:0,-185.133,-1974.84	0/1:67:45,22:45:1599:22:775:-49.5415,0,-124.03	0/1:469:331,138:331:11823:138:4861:-295.836,0,-922.74	0/1:212:158,54:158:5658:54:1894:-106.391,0,-445.519	0/0:211:211,0:211:7538:0:0:0,-63.5173,-678.459	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:47:22,25:22:780:25:888:-65.9836,0,-56.3746	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:379:379,0:379:13485:0:0:0,-114.09,-1213.45	0/1:276:169,107:169:6037:107:3792:-257.458,0,-460.349	0/1:133:79,53:79:2789:53:1885:-128.631,0,-211.155	0/1:4:3,1:3:108:1:36:-2.38905,0,-8.87105	0/1:328:237,91:237:8457:91:3217:-190.472,0,-662.393	0/1:67:44,23:44:1567:23:819:-53.686,0,-121.152	0/1:291:198,93:198:7076:93:3302:-208.824,0,-549.292	0/1:99:60,39:60:2148:39:1362:-92.6948,0,-163.783	0/0:141:141,0:141:4926:0:0:0,-42.4452,-443.493	0/1:114:92,22:92:3259:22:784:-36.3673,0,-259.21	0/0:349:349,0:349:12416:0:0:0,-105.059,-1117.28	0/1:341:228,113:228:8161:113:4006:-257.581,0,-631.823	0/0:314:314,0:314:11161:0:0:0,-94.5234,-1004.38	0/0:362:362,0:362:12897:0:0:0,-108.973,-1160.55	0/0:443:443,0:443:15737:0:0:0,-133.356,-1416.04	0/1:14:12,2:12:432:2:72:-2.61737,0,-35.0068	0/1:347:212,135:212:7581:135:4753:-322.082,0,-577.869	0/0:98:98,0:98:3486:0:0:0,-29.5009,-313.952	0/0:26:25,1:25:888:1:36:0,-4.23755,-76.6416	0/0:317:317,0:317:11261:0:0:0,-95.4265,-1013.38	0/1:105:85,20:85:3039:20:694:-30.9647,0,-242.131	0/1:10:8,2:8:288:2:72:-3.76642,0,-23.2547	0/1:36:20,16:20:720:16:576:-41.265,0,-54.2917	0/1:115:77,38:77:2733:38:1356:-87.4344,0,-211.594	0/1:192:118,74:118:4140:74:2589:-175.018,0,-314.989	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:321:201,120:201:7171:120:4264:-286.601,0,-548.818	0/0:462:461,1:461:16399:1:32:0,-135.878,-1472.38	0/0:239:239,0:239:8529:0:0:0,-71.9462,-767.606	0/0:225:223,1:223:7888:1:36:0,-64.1947,-706.128	0/1:302:219,83:219:7807:83:2934:-173.012,0,-611.747	0/0:374:371,2:371:13239:2:72:0,-105.812,-1184.48	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:161:161,0:161:5721:0:0:0,-48.4658,-515.008	0/0:163:163,0:163:5773:0:0:0,-49.0679,-519.686	0/0:39:39,0:39:1381:0:0:0,-11.7402,-124.587	0/1:124:64,60:64:2296:60:2064:-147.704,0,-169.573	0/0:168:168,0:168:5971:0:0:0,-50.573,-537.494	0/0:472:472,0:472:16735:0:0:0,-142.086,-1505.78	0/0:434:434,0:434:15516:0:0:0,-130.647,-1396.14	0/0:318:318,0:318:11352:0:0:0,-95.7275,-1021.56	0/0:310:309,1:309:10957:1:32:0,-90.1236,-982.833	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:359:359,0:359:12798:0:0:0,-108.07,-1151.64	0/1:272:184,88:184:6546:88:3096:-196.146,0,-507.341	0/1:432:277,155:277:9873:155:5444:-359.36,0,-758.47	0/0:199:199,0:199:7047:0:0:0,-59.905,-634.291	0/0:104:104,0:104:3711:0:0:0,-31.3071,-334.192	0/1:127:80,47:80:2836:47:1633:-108.63,0,-217.247	0/1:191:128,63:128:4538:63:2183:-138.766,0,-351.091	0/0:91:91,0:91:3227:0:0:0,-27.3937,-290.651	0/1:107:60,46:60:2112:46:1627:-114.095,0,-158.071	0/1:111:68,43:68:2399:43:1472:-98.9727,0,-182.745	0/1:80:52,28:52:1837:28:988:-64.6386,0,-141.526	0/1:147:85,62:85:3012:62:2179:-151.341,0,-227.059	0/1:85:31,54:31:1083:54:1902:-145.525,0,-72.1905	0/0:294:294,0:294:10417:0:0:0,-88.5028,-937.451	0/0:194:194,0:194:6923:0:0:0,-58.3998,-623.139
chr10	2053433	.	A	G	38102.7	PASS	AB=0.337904;ABP=2000.18;AC=49;AF=0.260638;AN=188;AO=2976;CIGAR=1X;DP=18810;DPB=18810;DPRA=0.995697;EPP=6465.31;EPPR=34360;GTI=8;LEN=1;MEANALT=1.06557;MQM=53.6468;MQMR=59.9712;NS=94;NUMALT=1;ODDS=0.221542;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104852;QR=563069;RO=15830;RPL=0;RPP=6465.31;RPPR=28.3739;RPR=2976;RUN=1;SAF=0;SAP=6465.31;SAR=2976;SRF=7700;SRP=28.3739;SRR=8130;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:48,21:48:1708:21:747:-46.4361,0,-133.165	0/0:398:398,0:398:14072:0:0:0,-119.81,-1266.25	0/1:353:254,99:254:9039:99:3545:-209.911,0,-707.225	0/1:444:280,164:280:9998:164:5796:-386.256,0,-766.095	0/1:146:95,51:95:3376:51:1770:-114.466,0,-260.105	0/1:84:65,19:65:2318:19:631:-31.3392,0,-183.592	0/1:236:165,71:165:5878:71:2494:-152.459,0,-458.087	0/1:352:208,144:208:7428:144:5096:-350.92,0,-562.602	0/1:104:84,20:84:2993:20:712:-32.8727,0,-238.293	0/1:178:130,48:130:4623:48:1696:-99.0353,0,-362.648	0/1:133:76,57:76:2696:57:2008:-140.567,0,-202.846	0/1:121:78,43:78:2792:43:1516:-99.6384,0,-214.725	0/0:135:133,2:133:4729:2:72:0,-33.8023,-418.933	0/0:156:156,0:156:5574:0:0:0,-46.9607,-501.466	0/0:133:133,0:133:4759:0:0:0,-40.037,-428.463	0/0:75:75,0:75:2655:0:0:0,-22.5772,-239.197	0/1:107:70,37:70:2466:37:1310:-85.2138,0,-189.982	0/0:95:95,0:95:3389:0:0:0,-28.5978,-305.216	0/1:88:53,34:53:1868:34:1203:-81.4669,0,-141.847	0/1:375:268,107:268:9537:107:3759:-225.372,0,-745.401	0/1:220:156,64:156:5539:64:2254:-134.726,0,-432.408	0/1:101:55,46:55:1952:46:1611:-114.761,0,-145.552	0/0:141:141,0:141:4948:0:0:0,-42.4452,-445.471	0/0:287:284,3:284:10120:3:108:0,-76.4642,-900.803	0/1:154:131,23:131:4681:23:806:-26.3573,0,-375.091	0/0:794:792,2:792:28190:2:72:0,-232.181,-2529.45	0/0:607:607,0:607:21627:0:0:0,-182.725,-1945.88	0/1:67:45,22:45:1604:22:777:-49.8327,0,-124.481	0/1:463:323,140:323:11519:140:4915:-302.445,0,-897.209	0/1:209:157,52:157:5590:52:1841:-102.413,0,-440.307	0/0:203:203,0:203:7214:0:0:0,-61.1091,-649.314	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:44:22,22:22:768:22:760:-55.3831,0,-56.1923	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2068	0/0:20:20,0:20:702:0:0:0,-6.0206,-63.5025	0/0:377:376,1:376:13441:1:36:0,-109.89,-1205.88	0/1:271:163,108:163:5773:108:3812:-260.644,0,-438.109	0/1:129:78,51:78:2788:51:1819:-123.815,0,-212.328	0/1:4:3,1:3:108:1:36:-2.38905,0,-8.87105	0/1:318:227,91:227:8104:91:3222:-193.093,0,-633.65	0/1:70:45,25:45:1608:25:896:-59.6701,0,-123.938	0/1:284:190,94:190:6709:94:3303:-210.955,0,-518.257	0/1:102:61,41:61:2179:41:1450:-99.5649,0,-165.668	0/0:138:138,0:138:4884:0:0:0,-41.5421,-439.713	0/1:111:90,21:90:3166:21:744:-33.6737,0,-251.748	0/0:337:337,0:337:12005:0:0:0,-101.447,-1080.31	0/1:331:222,109:222:7853:109:3891:-250.196,0,-607.132	0/0:306:306,0:306:10826:0:0:0,-92.1152,-974.245	0/0:356:356,0:356:12713:0:0:0,-107.167,-1143.99	0/0:432:432,0:432:15397:0:0:0,-130.045,-1385.44	0/1:13:11,2:11:396:2:72:-2.9184,0,-32.0694	0/1:342:206,135:206:7326:135:4741:-322.605,0,-556.378	0/0:98:97,1:97:3461:1:36:0,-25.9027,-308.103	0/0:26:25,1:25:891:1:36:0,-4.23755,-76.9114	0/0:320:320,0:320:11348:0:0:0,-96.3296,-1021.2	0/1:106:86,20:86:3076:20:670:-28.6026,0,-245.159	0/1:11:8,3:8:288:3:104:-6.33062,0,-22.9537	0/1:36:20,16:20:716:16:549:-38.8259,0,-53.9306	0/1:112:75,37:75:2634:37:1319:-85.0123,0,-203.59	0/1:192:116,76:116:4111:76:2661:-181.434,0,-312.378	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:321:199,122:199:7117:122:4316:-291.352,0,-543.957	0/0:460:459,1:459:16303:1:36:0,-134.878,-1463.35	0/0:226:226,0:226:8035:0:0:0,-68.0328,-723.172	0/0:219:218,1:218:7747:1:36:0,-62.3299,-693.441	0/1:296:212,83:212:7533:83:2918:-173.271,0,-588.848	0/0:370:366,4:366:12996:4:144:0,-98.0723,-1156.15	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.689	0/0:158:158,0:158:5613:0:0:0,-47.5627,-505.293	0/0:163:162,1:162:5745:1:36:0,-45.4696,-513.565	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:121:65,56:65:2323:56:2000:-143.059,0,-172.715	0/0:165:165,0:165:5884:0:0:0,-49.6699,-529.669	0/0:466:466,0:466:16605:0:0:0,-140.28,-1494.06	0/0:430:430,0:430:15321:0:0:0,-129.443,-1378.61	0/0:303:303,0:303:10761:0:0:0,-91.2121,-968.387	0/0:307:306,1:306:10809:1:36:0,-88.827,-969.124	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:352:352,0:352:12555:0:0:0,-105.963,-1129.78	0/1:266:178,88:178:6248:88:3105:-198.812,0,-482.073	0/1:429:277,152:277:9836:152:5367:-353.286,0,-756.044	0/0:201:200,1:200:7136:1:30:0,-57.5081,-639.297	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/1:123:77,46:77:2764:46:1583:-105.358,0,-211.974	0/1:191:127,64:127:4515:64:2235:-143.455,0,-349.021	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.979	0/1:108:61,47:61:2175:47:1688:-119.306,0,-163.496	0/1:109:68,41:68:2436:41:1440:-96.6522,0,-186.677	0/1:78:51,26:51:1832:26:913:-58.6847,0,-141.622	0/1:149:84,65:84:3003:65:2262:-158.176,0,-225.648	0/1:80:27,53:27:952:53:1811:-138.81,0,-61.9128	0/0:290:290,0:290:10308:0:0:0,-87.2987,-927.642	0/0:192:192,0:192:6816:0:0:0,-57.7978,-613.516
chr10	2053446	.	T	G	50993.5	PASS	AB=0.506038;ABP=4.87225;AC=49;AF=0.260638;AN=188;AO=2984;CIGAR=1X;DP=11269;DPB=11269;DPRA=1.02878;EPP=6310.13;EPPR=17536.1;GTI=0;LEN=1;MEANALT=1.01818;MQM=53.6367;MQMR=59.9481;NS=94;NUMALT=1;ODDS=3.4776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106420;QR=296535;RO=8281;RPL=2964;RPP=6310.13;RPPR=17536.1;RPR=20;RUN=1;SAF=0;SAP=6482.68;SAR=2984;SRF=0;SRP=17985;SRR=8281;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:17,21:17:608:21:736:-54.9365,0,-43.5429	0/0:191:191,0:191:6845:0:0:0,-57.4967,-616.108	0/1:189:87,102:87:3120:102:3623:-266.115,0,-223.872	0/1:304:139,165:139:4966:165:5868:-434.221,0,-355.573	0/1:84:34,50:34:1186:50:1767:-132.937,0,-81.7542	0/1:57:38,19:38:1349:19:674:-43.2501,0,-104.55	0/1:148:79,69:79:2840:69:2475:-177.177,0,-211.285	0/1:248:104,144:104:3732:144:5152:-387.072,0,-261.425	0/1:42:21,21:21:748:21:744:-54.411,0,-55.002	0/1:108:58,50:58:2088:50:1790:-128.04,0,-155.679	0/1:98:42,56:42:1508:56:2011:-151.38,0,-106.514	0/1:86:40,46:40:1432:46:1652:-121.946,0,-102.661	0/0:95:95,0:95:3401:0:0:0,-28.5978,-306.303	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.047	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.239	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:88:52,36:52:1849:36:1292:-89.1575,0,-140.197	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.425	0/1:60:27,33:27:945:33:1171:-86.9987,0,-67.3004	0/1:237:129,108:129:4605:108:3828:-273.089,0,-343.27	0/1:126:61,65:61:2169:65:2302:-167.522,0,-157.545	0/1:68:21,47:21:756:47:1688:-131.488,0,-47.8972	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/0:98:95,3:95:3408:3:108:0,-19.5695,-297.002	0/1:71:49,22:49:1752:22:792:-50.084,0,-136.591	0/0:412:412,0:412:14716:0:0:0,-124.024,-1324.18	0/0:301:301,0:301:10785:0:0:0,-90.61,-970.545	0/1:51:29,22:29:1040:22:784:-55.1666,0,-78.5618	0/1:325:184,141:184:6581:141:5033:-354.63,0,-494.533	0/1:130:75,55:75:2692:55:1972:-137.964,0,-203.39	0/0:108:108,0:108:3854:0:0:0,-32.5112,-347.048	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:41:16,25:16:572:25:876:-66.7161,0,-39.4712	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:211:211,0:211:7584:0:0:0,-63.5173,-682.59	0/1:188:78,110:78:2796:110:3917:-294.928,0,-195.286	0/1:105:53,52:53:1900:52:1868:-135.457,0,-139.67	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/1:227:135,92:135:4847:92:3286:-226.777,0,-368.042	0/1:56:31,25:31:1112:25:896:-63.9029,0,-83.5337	0/1:195:104,91:104:3713:91:3243:-232.534,0,-275.532	0/1:67:26,41:26:921:41:1468:-111.846,0,-63.0362	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:64:42,22:42:1485:22:780:-51.0885,0,-114.677	0/0:189:189,0:189:6777:0:0:0,-56.8947,-609.999	0/1:237:124,113:124:4452:113:4022:-290.292,0,-329.477	0/0:156:156,0:156:5559:0:0:0,-46.9607,-500.431	0/0:229:229,0:229:8194:0:0:0,-68.9359,-737.467	0/0:187:187,0:187:6716:0:0:0,-56.2926,-604.512	0/1:6:4,2:4:144:2:72:-5.02561,0,-11.5074	0/1:227:90,137:90:3213:137:4900:-371.344,0,-221.058	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:22:21,1:21:752:1:32:0,-3.42698,-64.8024	0/0:176:176,0:176:6309:0:0:0,-52.9813,-567.899	0/1:52:31,21:31:1116:21:746:-51.4737,0,-85.0981	0/1:8:5,3:5:180:3:108:-7.60322,0,-14.1414	0/1:32:17,15:17:612:15:519:-37.3877,0,-45.7805	0/1:66:30,36:30:1076:36:1284:-95.7184,0,-77.2849	0/1:150:76,74:76:2732:74:2647:-192.816,0,-200.968	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:219:97,122:97:3476:122:4351:-325.128,0,-247.126	0/0:212:211,1:211:7565:1:36:0,-60.2227,-677.286	0/0:166:166,0:166:5956:0:0:0,-49.971,-536.146	0/0:127:126,1:126:4509:1:36:0,-34.6351,-402.378	0/1:195:114,81:114:4100:81:2891:-201.304,0,-310.483	0/0:183:181,2:181:6469:2:72:0,-48.2567,-575.455	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.972	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.481	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:88:31,57:31:1116:57:2032:-155.669,0,-74.0708	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:340:339,0:339:12130:0:0:0,-102.049,-1091.15	0/0:198:198,0:198:7067:0:0:0,-59.6039,-636.088	0/0:189:187,0:187:6701:0:0:0,-56.2926,-602.794	0/0:150:149,1:149:5344:1:36:0,-41.5653,-477.497	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:169:169,0:169:6057:0:0:0,-50.8741,-545.224	0/1:180:94,86:94:3331:86:3059:-220.423,0,-245.548	0/1:283:128,155:128:4600:155:5559:-414.472,0,-328.971	0/0:113:113,0:113:4045:0:0:0,-34.0164,-364.231	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:91:45,46:45:1620:46:1642:-120.362,0,-118.696	0/1:126:60,66:60:2152:66:2341:-172.414,0,-156.017	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:82:35,47:35:1256:47:1679:-126.329,0,-88.6527	0/1:77:37,39:37:1332:39:1400:-102.597,0,-96.9395	0/1:59:31,28:31:1112:28:996:-71.8412,0,-82.6306	0/1:123:62,61:62:2228:61:2148:-155.778,0,-163.757	0/1:74:19,55:19:680:55:1980:-155.788,0,-39.2529	0/0:125:125,0:125:4481:0:0:0,-37.6287,-403.454	0/0:101:101,0:101:3621:0:0:0,-30.404,-326.093
chr10	2053461	.	T	G	168260	PASS	AB=0.482683;ABP=18.3529;AC=139;AF=0.739362;AN=188;AO=8096;CIGAR=1X;DP=11154;DPB=11154;DPRA=0;EPP=17574.6;EPPR=6623.84;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9492;MQMR=53.5911;NS=94;NUMALT=1;ODDS=1.59503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288735;QR=109660;RO=3057;RPL=8096;RPP=17583.3;RPPR=6623.84;RPR=0;RUN=1;SAF=1;SAP=17574.6;SAR=8095;SRF=0;SRP=6641.2;SRR=3057;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:21,17:21:756:17:596:-42.5225,0,-56.5738	1/1:181:0,181:0:0:181:6469:-582.292,-54.4864,0	0/1:187:104,83:104:3728:83:2975:-211.43,0,-275.664	0/1:302:168,134:168:6024:134:4791:-340.436,0,-448.272	0/1:84:51,33:51:1828:33:1184:-81.5818,0,-138.398	0/1:59:20,39:20:720:39:1392:-107.818,0,-46.6918	0/1:153:74,79:74:2664:79:2813:-207.351,0,-192.631	0/1:253:150,103:150:5392:103:3675:-254.794,0,-405.79	0/1:41:20,21:20:712:21:744:-54.9421,0,-51.8409	0/1:107:49,58:49:1760:58:2065:-153.909,0,-125.471	0/1:95:55,40:55:1976:40:1400:-97.6963,0,-149.039	0/1:84:46,38:46:1652:38:1355:-96.3354,0,-122.548	1/1:94:0,94:0:0:94:3361:-302.704,-28.2968,0	1/1:98:0,98:0:0:98:3494:-314.613,-29.5009,0	1/1:72:0,72:0:0:72:2592:-233.523,-21.6742,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/1:87:37,50:37:1332:50:1796:-135.733,0,-93.0442	1/1:60:0,60:0:0:60:2138:-192.685,-18.0618,0	0/1:63:34,29:34:1209:29:1015:-72.696,0,-89.4979	0/1:238:111,127:111:3973:127:4514:-334.783,0,-285.708	0/1:127:66,61:66:2357:61:2175:-157.786,0,-171.062	0/1:68:48,20:48:1713:20:703:-43.1235,0,-133.735	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:96:3,93:3:108:93:3309:-288.098,-18.9674,0	0/1:70:23,47:23:828:47:1692:-131.495,0,-53.6189	1/1:405:0,405:0:0:405:14492:-1304.03,-121.917,0	1/1:294:0,294:0:0:294:10495:-944.468,-88.5028,0	0/1:50:22,28:22:792:28:1000:-75.2639,0,-56.1839	0/1:323:142,180:142:5100:180:6400:-478.798,0,-361.144	0/1:132:56,76:56:2016:76:2716:-204.948,0,-141.297	1/1:104:0,104:0:0:104:3704:-333.562,-31.3071,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:38:24,14:24:864:14:500:-33.897,0,-66.5327	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:207:1,206:1:36:206:7337:-656.781,-58.7149,0	0/1:185:110,75:110:3933:75:2657:-183.685,0,-297.258	0/1:106:53,53:53:1908:53:1873:-136.938,0,-138.559	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.38905	0/1:224:93,131:93:3340:131:4669:-352.936,0,-232.713	0/1:56:25,31:25:896:31:1112:-83.5337,0,-63.9029	0/1:194:95,99:95:3405:99:3520:-258.481,0,-247.066	0/1:69:43,26:43:1548:26:923:-62.6157,0,-118.308	1/1:82:0,82:0:0:82:2927:-263.665,-24.6845,0	0/1:63:22,41:22:792:41:1455:-112.28,0,-52.4383	1/1:182:0,182:0:0:182:6498:-584.906,-54.7875,0	0/1:241:117,124:117:4177:124:4432:-326.504,0,-302.992	1/1:155:0,155:0:0:155:5536:-498.367,-46.6597,0	1/1:221:0,221:0:0:221:7893:-710.395,-66.5276,0	1/1:185:0,185:0:0:185:6609:-594.89,-55.6906,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.02561	0/1:231:140,91:140:5032:91:3243:-222.554,0,-381.68	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	1/1:22:1,21:1:36:21:748:-64.0479,-3.03343,0	1/1:171:0,171:0:0:171:6080:-547.304,-51.4761,0	0/1:50:21,29:21:748:29:1040:-78.8629,0,-52.1866	0/1:7:3,4:3:108:4:133:-10.1902,0,-7.90425	0/1:32:16,16:16:561:16:576:-42.542,0,-41.1122	0/1:66:38,28:38:1364:28:996:-70.0869,0,-102.897	0/1:151:77,74:77:2772:74:2635:-191.942,0,-203.674	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:219:125,94:125:4481:94:3353:-236.061,0,-336.721	1/1:204:1,203:1:36:203:7235:-647.61,-57.8144,0	1/1:165:0,165:0:0:165:5859:-527.422,-49.67,0	1/1:124:1,123:1:36:123:4381:-390.868,-33.732,0	0/1:195:85,110:85:3048:110:3948:-296.81,0,-215.373	1/1:183:2,181:2:72:181:6476:-575.961,-48.2567,0	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	1/1:90:0,90:0:0:90:3224:-290.374,-27.0927,0	1/1:98:0,98:0:0:98:3488:-314.131,-29.5009,0	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	0/1:89:59,30:59:2124:30:1063:-69.1594,0,-163.049	1/1:74:0,74:0:0:74:2647:-238.476,-22.2762,0	1/1:327:0,327:0:0:327:11633:-1046.83,-98.4368,0	1/1:196:1,195:1:36:195:6972:-623.948,-55.4036,0	1/1:184:0,184:0:0:184:6580:-592.273,-55.3895,0	1/1:149:1,148:1:36:148:5267:-470.574,-41.2642,0	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	1/1:163:0,163:0:0:163:5836:-525.347,-49.0679,0	0/1:182:90,92:90:3206:92:3279:-240.488,0,-232.895	0/1:285:158,127:158:5661:127:4523:-321.446,0,-422.967	1/1:112:0,112:0:0:112:3990:-359.287,-33.7154,0	1/1:64:0,64:0:0:64:2271:-204.652,-19.2659,0	0/1:92:47,45:47:1692:45:1612:-117.675,0,-124.267	0/1:127:68,59:68:2436:59:2087:-149.869,0,-180.36	1/1:49:0,49:0:0:49:1751:-157.873,-14.7505,0	0/1:81:47,34:47:1692:34:1216:-85.355,0,-127.789	0/1:79:43,36:43:1544:36:1275:-91.2686,0,-114.974	0/1:60:28,32:28:1008:32:1136:-84.4871,0,-72.6336	0/1:124:64,60:64:2304:60:2135:-155.09,0,-169.263	0/1:73:55,18:55:1980:18:633:-35.3209,0,-156.089	1/1:121:0,121:0:0:121:4297:-386.907,-36.4246,0	1/1:102:0,102:0:0:102:3660:-329.603,-30.7051,0
chr10	2069375	.	AGA	AGC	100712	PASS	AB=0.501973;ABP=3.12167;AC=136;AF=0.73913;AN=184;AO=4835;CIGAR=2M1X;DP=6502;DPB=6504;DPRA=0;EPP=10502.1;EPPR=3583.77;GTI=0;LEN=1;MEANALT=1.15217;MQM=59.9938;MQMR=59.9951;NS=92;NUMALT=1;ODDS=2.44481;PAIRED=0;PAIREDR=0;PAO=3;PQA=100;PQR=0;PRO=0;QA=172384;QR=57945;RO=1649;RPL=0;RPP=10502.1;RPPR=3583.77;RPR=4835;RUN=1;SAF=0;SAP=10502.1;SAR=4835;SRF=0;SRP=3583.77;SRR=1649;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	1/1:103:0,103:0:0:103:3650:-328.704,-31.0061,0	0/1:77:36,41:36:1261:41:1447:-107.344,0,-90.6129	0/1:212:102,110:102:3629:110:3936:-290.614,0,-262.999	0/1:21:16,5:16:562:5:180:-10.2304,0,-44.5877	0/1:31:19,12:19:674:12:432:-29.8893,0,-51.6556	0/1:89:46,43:46:1621:43:1535:-111.651,0,-119.385	0/1:102:47,55:47:1636:55:1954:-145.429,0,-116.82	0/1:52:18,34:18:616:34:1207:-93.2817,0,-40.1058	0/1:82:39,43:39:1356:43:1533:-113.578,0,-97.6492	0/1:44:19,25:19:677:25:895:-67.6248,0,-48.0133	0/1:52:31,21:31:1103:21:744:-51.6308,0,-83.9274	1/1:56:0,56:0:0:56:1985:-178.923,-16.8577,0	1/1:71:0,71:0:0:71:2509:-226.062,-21.3731,0	1/1:53:0,53:0:0:53:1866:-168.218,-15.9546,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:73:35,38:35:1241:38:1352:-100.005,0,-90.019	1/1:47:1,46:1:36:46:1626:-143.029,-10.5501,0	0/1:17:5,12:5:164:12:423:-33.2882,0,-9.96523	0/1:62:32,30:32:1130:30:1072:-78.1286,0,-83.3434	0/1:97:58,39:58:2039:39:1404:-97.4594,0,-154.581	0/1:47:28,19:28:982:19:671:-46.5112,0,-74.485	1/1:50:0,50:0:0:50:1796:-161.295,-15.0515,0	1/1:89:5,84:5:180:84:2984:-252.239,-10.2396,0	0/1:32:22,10:22:773:10:351:-22.2937,0,-60.2585	1/1:218:1,217:1:36:217:7739:-692.943,-62.0263,0	1/1:103:0,103:0:0:103:3696:-332.842,-31.0061,0	0/1:18:6,12:6:213:12:428:-33.4403,0,-14.0978	0/1:168:101,66:101:3517:66:2360:-162.174,0,-266.259	0/1:161:79,82:79:2818:82:2916:-214.208,0,-205.394	1/1:189:2,186:2:72:186:6666:-593.159,-50.1569,0	.:.:.:.:.:.:.:.	0/1:8:5,3:5:172:3:104:-7.29457,0,-13.4097	1/1:3:0,3:0:0:3:89:-8.30436,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:116:0,116:0:0:116:4147:-373.413,-34.9195,0	0/1:121:53,68:53:1871:68:2418:-181.391,0,-132.184	0/1:49:20,29:20:687:29:1044:-79.5243,0,-47.3981	.:.:.:.:.:.:.:.	0/1:122:44,77:44:1538:77:2748:-210.778,0,-101.926	0/1:20:12,8:12:424:8:279:-19.4269,0,-32.4752	0/1:72:42,29:42:1467:29:1036:-71.8982,0,-110.668	0/1:42:14,28:14:500:28:985:-76.3183,0,-32.6931	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	0/1:56:33,23:33:1180:23:816:-56.904,0,-89.6508	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:99:50,49:50:1761:49:1759:-128.792,0,-128.97	1/1:61:0,61:0:0:61:2139:-192.773,-18.3628,0	1/1:161:1,160:1:24:160:5724:-512.875,-46.0659,0	1/1:107:0,107:0:0:107:3806:-342.737,-32.2102,0	0/1:15:6,9:6:212:9:324:-24.9904,0,-14.9096	0/1:66:32,33:32:1134:33:1165:-85.2284,0,-82.4413	1/1:61:0,57:0:0:57:2043:-183.791,-17.1587,0	0/1:16:8,8:8:286:8:288:-21.4509,0,-21.269	1/1:98:0,97:0:0:97:3450:-310.462,-29.1999,0	0/1:19:11,8:11:383:8:288:-20.5478,0,-29.0839	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:16:8,8:8:286:8:288:-21.4509,0,-21.269	0/1:62:17,45:17:601:45:1616:-127.066,0,-35.755	0/1:69:40,29:40:1376:29:1036:-72.7828,0,-103.363	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:183:100,83:100:3533:83:2971:-212.534,0,-263.092	1/1:90:0,90:0:0:90:3213:-289.391,-27.0927,0	1/1:68:0,67:0:0:67:2384:-214.564,-20.169,0	1/1:54:0,54:0:0:54:1922:-173.256,-16.2556,0	0/1:124:59,65:59:2063:65:2308:-170.652,0,-148.613	1/1:97:0,97:0:0:97:3467:-312.242,-29.1999,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:80:1,79:1:36:79:2832:-251.52,-20.4841,0	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	1/1:21:0,21:0:0:21:724:-65.4773,-6.32163,0	0/1:77:45,32:45:1549:32:1139:-79.6391,0,-116.518	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:105:1,104:1:34:104:3708:-330.522,-28.2092,0	1/1:157:0,157:0:0:157:5617:-505.65,-47.2617,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:93:1,91:1:36:91:3228:-287.181,-24.4164,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:93:0,90:0:0:90:3214:-289.151,-27.0927,0	0/1:65:26,39:26:876:39:1385:-105.38,0,-59.5787	0/1:101:50,50:50:1758:50:1792:-131.1,0,-128.04	1/1:94:0,94:0:0:94:3346:-301.298,-28.2968,0	1/1:71:0,71:0:0:71:2517:-226.781,-21.3731,0	0/1:63:28,34:28:981:34:1212:-90.3627,0,-69.5799	0/1:112:51,61:51:1799:61:2176:-162.332,0,-128.417	1/1:42:0,42:0:0:42:1491:-134.484,-12.6433,0	0/1:67:30,37:30:1063:37:1332:-100.013,0,-75.8129	0/1:41:20,20:20:704:20:716:-52.4714,0,-51.388	0/1:35:23,12:23:819:12:428:-28.3228,0,-63.4967	0/1:83:35,48:35:1216:48:1698:-128.119,0,-84.7559	0/1:47:31,16:31:1096:16:576:-38.0266,0,-84.802	1/1:138:2,136:2:72:136:4877:-432.244,-34.7054,0	1/1:65:0,65:0:0:65:2314:-208.519,-19.567,0
chr10	2080269	.	A	G	156034	PASS	AB=0.429029;ABP=330.961;AC=135;AF=0.718085;AN=188;AO=7958;CIGAR=1X;DP=12268;DPB=12268;DPRA=65.9462;EPP=17283.6;EPPR=9355.54;GTI=5;LEN=1;MEANALT=1.03226;MQM=58.7597;MQMR=58.5159;NS=94;NUMALT=1;ODDS=0.971784;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=280377;QR=153543;RO=4307;RPL=3;RPP=17257.5;RPPR=9338.18;RPR=7955;RUN=1;SAF=3;SAP=17257.5;SAR=7955;SRF=2;SRP=9338.18;SRR=4305;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:106:55,51:55:1950:51:1798:-130.003,0,-143.586	1/1:101:3,98:3:108:98:3456:-300.895,-20.3307,0	0/1:282:169,112:169:6047:112:3967:-271.814,0,-458	0/1:345:182,163:182:6510:163:5761:-414.491,0,-481.727	0/1:110:54,56:54:1940:56:2006:-147.626,0,-141.56	0/1:58:34,24:34:1220:24:829:-56.9975,0,-92.6133	0/1:119:77,42:77:2739:42:1496:-99.0328,0,-210.718	0/1:238:134,104:134:4768:104:3696:-261.086,0,-357.332	0/1:172:111,61:111:3958:61:2188:-145.216,0,-304.395	0/1:104:66,38:66:2353:38:1318:-87.608,0,-180.576	0/1:63:29,34:29:1021:34:1174:-86.9335,0,-73.2354	0/1:150:77,73:77:2739:73:2560:-185.277,0,-200.232	1/1:110:0,110:0:0:110:3842:-345.437,-33.1133,0	1/1:70:0,70:0:0:70:2467:-222.146,-21.0721,0	1/1:97:2,95:2:72:95:3334:-293.415,-22.3632,0	1/1:89:0,89:0:0:89:3138:-282.465,-26.7917,0	0/1:47:24,23:24:855:23:805:-58.2802,0,-63.1001	1/1:39:0,39:0:0:39:1373:-123.727,-11.7402,0	0/1:38:22,16:22:784:16:559:-39.1805,0,-59.3456	0/1:460:304,156:304:10878:156:5496:-355.82,0,-839.914	0/1:268:141,127:141:4994:127:4453:-320.025,0,-368.006	0/1:200:161,39:161:5748:39:1391:-65.2254,0,-457.01	1/1:153:0,153:0:0:153:5415:-486.995,-46.0576,0	1/1:122:6,116:6:216:116:4094:-348.714,-16.9808,0	0/1:175:100,75:100:3546:75:2640:-185.152,0,-266.487	1/1:265:1,264:1:36:264:9338:-836.313,-76.1747,0	1/1:348:0,347:0:0:347:12251:-1099.75,-104.457,0	0/1:60:33,27:33:1180:27:964:-68.9701,0,-88.3986	0/1:431:217,214:217:7756:214:7580:-551.589,0,-567.848	0/1:138:80,58:80:2868:58:2044:-142.682,0,-216.633	1/1:85:1,84:1:36:84:2959:-262.888,-21.9919,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:31:14,17:14:500:17:587:-43.2562,0,-36.0033	1/1:4:0,4:0:0:4:129:-11.9248,-1.20412,0	1/1:7:0,7:0:0:7:252:-22.9528,-2.10721,0	1/1:18:0,18:0:0:18:644:-58.2748,-5.41854,0	1/1:256:0,256:0:0:256:9012:-809.926,-77.0637,0	0/1:167:109,58:109:3840:58:2054:-134.726,0,-295.021	0/1:81:53,28:53:1878:28:974:-63.1719,0,-144.588	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.32017	0/1:198:123,75:123:4389:75:2650:-179.044,0,-334.958	0/1:48:26,22:26:928:22:764:-54.5823,0,-69.3429	0/1:189:65,124:65:2299:124:4365:-335.705,0,-150.147	0/1:82:45,37:45:1612:37:1298:-92.4203,0,-120.622	1/1:87:0,87:0:0:87:3060:-275.332,-26.1896,0	0/1:243:143,100:143:5077:100:3518:-243.573,0,-383.505	1/1:166:0,166:0:0:166:5834:-524.153,-49.971,0	0/1:227:127,100:127:4541:100:3487:-245.563,0,-340.314	1/1:129:0,129:0:0:129:4517:-406.52,-38.8329,0	1/1:144:1,143:1:36:143:4996:-444.855,-39.75,0	1/1:156:0,156:0:0:156:5547:-498.42,-46.9607,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:222:111,111:111:3979:111:3958:-289.312,0,-290.812	1/1:43:0,43:0:0:43:1503:-135.34,-12.9443,0	0/1:17:8,9:8:288:9:316:-23.5847,0,-20.8438	1/1:191:0,191:0:0:191:6740:-606.182,-57.4967,0	0/1:79:61,18:61:2188:18:640:-34.1318,0,-173.313	0/1:17:8,9:8:288:9:296:-21.8373,0,-21.1499	0/1:10:4,6:4:144:6:216:-16.7514,0,-10.3033	0/1:140:75,65:75:2654:65:2303:-165.186,0,-196.782	0/1:175:93,82:93:3328:82:2886:-207.016,0,-246.812	0/1:8:1,7:1:36:7:235:-19.0697,0,-1.19003	0/1:226:120,106:120:4292:106:3692:-264.268,0,-317.88	1/1:195:1,194:1:36:194:6726:-601.537,-55.1026,0	1/1:105:0,105:0:0:105:3720:-333.743,-31.6082,0	1/1:125:1,124:1:36:124:4400:-392.387,-34.0305,0	0/1:314:175,139:175:6251:139:4907:-347.043,0,-467.757	1/1:200:4,196:4:144:196:6985:-614.802,-46.8924,0	1/1:63:0,63:0:0:63:2208:-198.848,-18.9649,0	1/1:91:1,90:1:36:90:3196:-283.333,-23.7965,0	1/1:49:0,49:0:0:49:1732:-156.158,-14.7505,0	1/1:16:0,16:0:0:16:576:-52.1465,-4.81648,0	0/1:210:126,84:126:4465:84:2956:-202.691,0,-338.101	1/1:76:1,75:1:36:75:2641:-234.15,-19.3573,0	1/1:174:2,172:2:72:172:6014:-534.879,-46.2032,0	1/1:240:0,240:0:0:240:8490:-763.837,-72.2472,0	1/1:89:0,89:0:0:89:3080:-276.275,-26.7917,0	1/1:74:1,73:1:36:73:2593:-229.889,-18.679,0	0/1:8:1,7:1:36:7:252:-20.6118,0,-1.18903	1/1:92:0,91:0:0:91:3209:-288.641,-27.3937,0	0/1:131:73,58:73:2601:58:2037:-144.115,0,-193.833	0/1:280:182,98:182:6480:98:3445:-225.815,0,-498.334	1/1:75:0,75:0:0:75:2642:-237.9,-22.5773,0	1/1:92:0,92:0:0:92:3212:-288.854,-27.6948,0	0/1:59:29,30:29:1036:30:1059:-77.7957,0,-75.7908	0/1:168:87,81:87:3103:81:2804:-201.893,0,-227.838	1/1:35:0,35:0:0:35:1248:-112.486,-10.5361,0	0/1:83:49,34:49:1742:34:1197:-82.7272,0,-132.013	0/1:102:58,44:58:2075:44:1502:-104.504,0,-155.786	0/1:63:35,28:35:1248:28:983:-69.5014,0,-93.66	0/1:99:54,45:54:1884:45:1586:-113.208,0,-139.84	0/1:244:147,97:147:5247:97:3407:-233.274,0,-398.335	1/1:154:1,153:1:36:153:5414:-483.715,-42.7629,0	1/1:142:0,142:0:0:142:5039:-453.285,-42.7463,0
chr10	2080289	.	AAG	GAG,GAA	306976	PASS	AB=0.425281,0.572494;ABP=373.588,351.851;AC=135,53;AF=0.718085,0.281915;AN=188;AO=8060,4399;CIGAR=1X2M,1X1M1X;DP=12492;DPB=12492;DPRA=67.1505,1.3752;EPP=8682.7,4561.93;EPPR=3.0103;GTI=4;LEN=1,3;MEANALT=2.01075,2.35385;MQM=58.7824,58.3912;MQMR=60;NS=94;NUMALT=2;ODDS=2.54321;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=287996,155451;QR=72;RO=2;RPL=1192,680;RPP=8682.7,4561.93;RPPR=3.0103;RPR=6868,3719;RUN=1,1;SAF=0,0;SAP=17505.1,9555.32;SAR=8060,4399;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:110:0,52,58:0:0:52,58:1864,2045:-317.358,-165.599,-149.945,-152.113,0,-134.653	1/1:105:0,103,2:0:0:103,2:3688,72:-331.343,-31.0061,0,-325.47,-24.7733,-324.868	1/2:290:0,113,176:0:0:113,176:4029,6236:-833.76,-505.915,-471.899,-327.988,0,-275.007	1/2:349:0,160,189:0:0:160,189:5740,6686:-1012.18,-544.158,-495.994,-468.378,0,-411.484	1/2:111:0,56,55:0:0:56,55:2016,1953:-323.695,-159.287,-142.429,-164.765,0,-148.209	1/2:61:0,24,37:0:0:24,37:852,1328:-177.567,-108.578,-101.353,-69.3443,0,-58.2062	1/2:122:0,41,80:0:0:41,80:1464,2827:-349.313,-230.034,-217.691,-119.275,0,-95.1925	1/2:244:0,106,137:0:0:106,137:3770,4861:-702.921,-395.796,-363.887,-307.22,0,-265.979	1/2:179:0,66,113:0:0:66,113:2347,3977:-514.89,-323.92,-304.052,-191.324,0,-157.307	1/2:106:0,39,66:0:0:39,66:1383,2338:-303.059,-190.385,-178.645,-112.746,0,-92.8781	1/2:64:0,33,30:0:0:33,30:1184,1075:-184.134,-87.6727,-77.7387,-96.4629,0,-87.432	1/2:154:0,75,78:0:0:75,78:2678,2738:-439.227,-221.184,-198.607,-218.043,0,-194.563	1/1:113:0,113,0:0:0:113,0:4005,0:-360.038,-34.0164,0,-360.038,-34.0164,-360.038	1/1:72:0,72,0:0:0:72,0:2571,0:-231.503,-21.6742,0,-231.503,-21.6742,-231.503	1/1:98:1,96,1:1:36:96,1:3426,36:-304.637,-25.9615,0,-302,-25.9615,-304.637	1/1:91:0,91,0:0:0:91,0:3252,0:-292.722,-27.3937,0,-292.722,-27.3937,-292.722	1/2:49:0,24,25:0:0:24,25:854,898:-142.893,-73.5874,-66.3626,-69.6619,0,-62.1362	1/1:40:0,39,0:0:0:39,0:1404,0:-126.201,-11.7402,0,-126.201,-11.7402,-126.201	1/2:38:0,16,22:0:0:16,22:576,788:-111.496,-64.5164,-59.6999,-47.3386,0,-40.716	1/2:466:0,156,310:0:0:156,310:5598,10951:-1347.86,-891.651,-844.691,-456.561,0,-363.242	1/2:276:0,128,147:0:0:128,147:4558,5150:-789.5,-418.201,-379.669,-371.297,0,-327.046	1/2:201:0,38,163:0:0:38,163:1364,5725:-577.319,-466.083,-454.644,-111.593,0,-62.5253	1/1:151:0,151,0:0:0:151,0:5398,0:-485.416,-45.4555,0,-485.416,-45.4555,-485.416	1/1:125:0,118,6:0:0:118,6:4200,216:-377.684,-35.5215,0,-360.104,-17.9227,-358.298	1/2:183:0,77,106:0:0:77,106:2760,3708:-526.937,-301.861,-278.681,-225.431,0,-193.522	1/1:267:0,265,1:0:0:265,1:9484,36:-852.622,-79.773,0,-849.684,-76.7953,-849.383	1/1:350:0,349,0:0:0:349,0:12478,0:-1121.52,-105.059,0,-1121.52,-105.059,-1121.52	1/2:60:0,27,33:0:0:27,33:972,1180:-175.793,-96.526,-88.3982,-79.6251,0,-69.6911	1/2:440:0,215,225:0:0:215,225:7685,7929:-1271.42,-645.26,-580.539,-626.519,0,-558.787	1/2:141:0,61,80:0:0:61,80:2192,2828:-409.276,-230.495,-212.132,-179.138,0,-155.055	1/1:85:0,84,1:0:0:84,1:2992,36:-269.097,-25.2865,0,-266.162,-21.9919,-265.861	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:34:0,19,15:0:0:19,15:665,538:-98.0644,-44.2394,-38.5199,-54.179,0,-49.6635	1/1:4:0,4,0:0:0:4,0:144,0:-13.3099,-1.20412,0,-13.3099,-1.20412,-13.3099	1/1:7:0,7,0:0:0:7,0:237,0:-21.5838,-2.10721,0,-21.5838,-2.10721,-21.5838	1/1:19:0,19,0:0:0:19,0:676,0:-61.1522,-5.71957,0,-61.1522,-5.71957,-61.1522	1/1:262:0,262,0:0:0:262,0:9324,0:-838.422,-78.8699,0,-838.422,-78.8699,-838.422	1/2:166:0,60,106:0:0:60,106:2148,3754:-480.268,-305.257,-287.196,-175.367,0,-143.458	1/2:82:0,29,52:0:0:29,52:1037,1847:-234.432,-150.319,-141.589,-84.2525,0,-68.599	2/2:2:0,0,2:0:0:0,2:0,72:-6.32017,-6.32017,-6.32017,-0.60206,-0.60206,0	1/2:202:0,75,127:0:0:75,127:2669,4466:-579.695,-362.285,-339.708,-217.763,0,-179.532	1/2:50:0,23,27:0:0:23,27:828,968:-146.78,-79.2189,-72.2952,-67.9204,0,-59.7926	1/2:189:0,124,65:0:0:124,65:4429,2283:-546.574,-185.92,-148.592,-361.007,0,-341.44	1/2:82:0,37,45:0:0:37,45:1315,1600:-237.807,-130.681,-119.543,-107.481,0,-93.9348	1/1:89:0,89,0:0:0:89,0:3178,0:-285.903,-26.7917,0,-285.903,-26.7917,-285.903	1/2:253:0,102,150:0:0:102,150:3630,5254:-722.656,-427.058,-396.353,-295.592,0,-250.437	1/1:171:0,171,0:0:0:171,0:6104,0:-548.286,-51.4761,0,-548.286,-51.4761,-548.286	1/2:230:0,101,129:0:0:101,129:3604,4596:-668.186,-374.535,-344.131,-294.006,0,-255.174	1/1:130:0,130,0:0:0:130,0:4631,0:-416.558,-39.1339,0,-416.558,-39.1339,-416.558	1/1:146:0,145,0:0:0:145,0:5181,0:-465.589,-43.6494,0,-465.589,-43.6494,-465.589	1/1:157:0,157,0:0:0:157,0:5623,0:-505.663,-47.2617,0,-505.663,-47.2617,-505.663	1/2:11:0,4,7:0:0:4,7:144,252:-32.6714,-20.9217,-19.7176,-12.1095,0,-10.0023	1/2:224:0,112,112:0:0:112,112:3997,4004:-651.629,-326.19,-292.475,-325.795,0,-292.08	1/1:45:0,45,0:0:0:45,0:1601,0:-144.066,-13.5464,0,-144.066,-13.5464,-144.066	1/2:17:0,9,8:0:0:9,8:324,278:-49.1769,-22.8098,-20.1006,-26.7189,0,-24.3106	1/1:194:0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chr10	2149393	.	T	C	13622.3	PASS	AB=0.426464;ABP=101.694;AC=49;AF=0.263441;AN=186;AO=899;CIGAR=1X;DP=3998;DPB=3998;DPRA=1.05389;EPP=1946.49;EPPR=6561.87;GTI=1;LEN=1;MEANALT=1.03846;MQM=59.8788;MQMR=59.6147;NS=93;NUMALT=1;ODDS=0.972732;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31959;QR=110646;RO=3096;RPL=1;RPP=1946.49;RPPR=6561.87;RPR=898;RUN=1;SAF=899;SAP=1955.16;SAR=0;SRF=3096;SRP=6725.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:34,15:34:1211:15:531:-33.3668,0,-94.5404	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9954	0/1:106:32,74:32:1152:74:2640:-205.938,0,-72.0724	0/1:42:32,10:32:1139:10:341:-18.3745,0,-90.1645	0/1:24:14,10:14:496:10:360:-25.5192,0,-37.7495	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:32:16,16:16:576:16:559:-40.9891,0,-42.542	0/1:51:37,14:37:1332:14:489:-28.9864,0,-104.83	0/1:99:55,44:55:1959:44:1571:-111.872,0,-146.574	0/1:24:12,12:12:424:12:428:-31.6203,0,-31.2717	0/1:24:12,11:12:432:11:396:-28.6997,0,-31.9382	0/1:62:30,32:30:1068:32:1139:-84.1545,0,-77.7581	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.234	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.23	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.937	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.719	0/1:14:9,5:9:320:5:171:-11.511,0,-24.9279	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:19:9,10:9:324:10:341:-25.2982,0,-23.7863	0/1:47:32,15:32:1152:15:526:-33.5197,0,-89.8417	0/1:84:57,27:57:2040:27:956:-61.0692,0,-158.586	0/1:51:19,32:19:680:32:1140:-87.5533,0,-46.0965	0/0:56:55,1:55:1963:1:36:0,-13.2594,-173.325	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.898	0/1:40:33,7:33:1184:7:252:-10.9878,0,-94.8094	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.102	0/0:80:80,0:80:2839:0:0:0,-24.0824,-255.695	0/1:24:12,12:12:408:12:424:-31.2717,0,-29.8194	0/1:55:32,23:32:1139:23:824:-57.9267,0,-86.2508	0/1:33:23,10:23:824:10:360:-22.8103,0,-64.5127	0/0:78:77,1:77:2748:1:36:0,-19.8872,-243.946	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:32:14,17:14:500:17:608:-45.3604,0,-35.6345	.:.:.:.:.:.:.:.	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.173	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/0:139:139,0:139:4972:0:0:0,-41.8432,-447.59	0/1:45:33,12:33:1179:12:432:-25.6748,0,-92.8545	0/1:30:16,14:16:558:14:496:-35.9434,0,-41.5156	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:24:19,5:19:680:5:165:-7.94419,0,-54.3044	0/1:24:15,9:15:527:9:320:-21.9176,0,-40.5191	0/1:83:52,31:52:1872:31:1108:-75.0437,0,-143.741	0/1:37:22,15:22:788:15:523:-36.2599,0,-60.096	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.02	0/1:62:40,22:40:1400:22:788:-52.5809,0,-107.626	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.159	0/1:56:37,19:37:1332:19:671:-43.8581,0,-103.314	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.382	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7631	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.935	0/1:16:4,12:4:144:12:409:-32.319,0,-8.49714	0/1:43:36,7:36:1292:7:233:-8.35,0,-103.633	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:52:51,1:51:1836:1:36:0,-12.0553,-161.757	0/1:18:14,4:14:504:4:144:-7.88099,0,-40.1211	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:16:3,13:3:104:13:452:-36.1946,0,-4.88633	0/1:46:24,22:24:851:22:788:-57.3928,0,-63.0621	0/1:63:36,27:36:1292:27:968:-68.4725,0,-97.6036	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:48:34,14:34:1215:14:500:-30.8867,0,-95.2017	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.71	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7566	0/1:75:32,43:32:1144:43:1540:-116.302,0,-80.5345	0/0:72:71,0:71:2518:0:0:0,-21.3731,-226.477	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3535	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.751	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:43:33,10:33:1158:10:351:-18.9824,0,-91.5593	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.682	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.265	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.374	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7917	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6919	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.141	0/1:43:30,13:30:1072:13:459:-28.6998,0,-83.8466	0/1:62:32,30:32:1148:30:1071:-78.0378,0,-84.9553	0/0:83:83,0:83:2980:0:0:0,-24.9855,-267.224	0/0:34:34,0:34:1206:0:0:0,-10.235,-108.829	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	0/1:88:50,38:50:1796:38:1349:-95.2176,0,-135.421	0/0:27:27,0:27:946:0:0:0,-8.12781,-85.4529	0/1:49:21,28:21:728:28:1008:-76.2859,0,-51.081	0/1:50:28,22:28:999:22:788:-56.1933,0,-75.1715	0/1:15:10,5:10:351:5:180:-12.0366,0,-27.4112	0/1:53:28,25:28:1004:25:892:-64.6451,0,-74.7131	0/1:42:15,27:15:536:27:972:-75.1546,0,-35.9269	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.446	0/0:56:56,0:56:1984:0:0:0,-16.8577,-178.805
chr10	2149416	.	A	G	60384.8	PASS	AB=0.562775;ABP=73.0756;AC=137;AF=0.736559;AN=186;AO=2963;CIGAR=1X;DP=3862;DPB=3862;DPRA=0;EPP=6437.08;EPPR=1952.99;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.6186;MQMR=59.892;NS=93;NUMALT=1;ODDS=4.43121;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104336;QR=32044;RO=898;RPL=2963;RPP=6437.08;RPPR=1952.99;RPR=0;RUN=1;SAF=2963;SAP=6437.08;SAR=0;SRF=898;SRP=1952.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:18,32:18:640:32:1132:-87.1324,0,-42.8732	1/1:22:0,22:0:0:22:775:-70.0579,-6.62266,0	0/1:105:74,31:74:2647:31:1085:-66.3454,0,-206.868	0/1:40:11,29:11:388:29:1036:-81.5021,0,-23.2162	0/1:23:9,14:9:320:14:491:-37.5974,0,-22.2185	0/1:9:6,3:6:216:3:100:-6.62117,0,-17.0812	0/1:33:17,16:17:593:16:568:-41.5179,0,-43.7331	0/1:49:14,35:14:495:35:1225:-95.8012,0,-30.1326	0/1:94:42,52:42:1503:52:1833:-136.907,0,-107.266	0/1:23:12,11:12:428:11:392:-28.6964,0,-31.9213	0/1:24:11,13:11:392:13:468:-35.2303,0,-28.3953	0/1:60:31,29:31:1091:29:1006:-72.78,0,-80.4369	1/1:42:0,42:0:0:42:1473:-132.854,-12.6433,0	1/1:42:0,42:0:0:42:1496:-134.805,-12.6433,0	1/1:57:0,57:0:0:57:2005:-180.711,-17.1587,0	1/1:38:0,38:0:0:38:1330:-119.361,-11.4391,0	0/1:13:5,8:5:180:8:283:-21.8988,0,-12.6387	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:19:12,7:12:424:7:252:-17.3094,0,-32.7768	0/1:44:15,29:15:536:29:1009:-77.8736,0,-35.3239	0/1:82:27,55:27:964:55:1937:-149.917,0,-62.3924	0/1:49:32,17:32:1139:17:599:-39.4784,0,-88.0646	1/1:53:1,52:1:36:52:1832:-161.543,-12.3563,0	1/1:44:0,44:0:0:44:1536:-138.458,-13.2453,0	0/1:35:7,28:7:252:28:1004:-80.1316,0,-12.4929	1/1:108:0,108:0:0:108:3826:-344.506,-32.5112,0	1/1:77:0,76:0:0:76:2661:-239.329,-22.8783,0	0/1:24:12,12:12:432:12:420:-30.9093,0,-31.9965	0/1:53:23,30:23:820:30:1042:-78.1308,0,-58.1679	0/1:32:9,23:9:324:23:797:-62.3761,0,-19.8729	1/1:73:0,73:0:0:73:2558:-230.452,-21.9752,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:30:17,13:17:612:13:468:-33.4187,0,-46.3825	.:.:.:.:.:.:.:.	1/1:32:0,32:0:0:32:1101:-99.3914,-9.63296,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:131:0,131:0:0:131:4576:-411.988,-39.4349,0	0/1:45:12,33:12:432:33:1176:-92.59,0,-25.6748	0/1:30:14,16:14:496:16:535:-39.4346,0,-35.9434	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:24:5,19:5:180:19:661:-52.5869,0,-9.32265	0/1:24:10,14:10:344:14:496:-37.7331,0,-24.0674	0/1:82:31,51:31:1107:51:1819:-139.273,0,-75.2511	0/1:36:14,22:14:500:22:759:-57.7799,0,-34.4987	1/1:33:0,33:0:0:33:1162:-104.849,-9.93399,0	0/1:61:21,40:21:748:40:1415:-109.284,0,-49.2825	1/1:36:0,36:0:0:36:1284:-115.846,-10.8371,0	0/1:55:18,37:18:648:37:1298:-100.552,0,-42.0906	1/1:30:0,30:0:0:30:1063:-95.9716,-9.0309,0	1/1:19:0,19:0:0:19:672:-60.8022,-5.71957,0	1/1:72:0,72:0:0:72:2516:-226.686,-21.6742,0	0/1:15:11,4:11:392:4:140:-8.42913,0,-31.1046	0/1:42:8,34:8:284:34:1187:-94.4843,0,-13.2601	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:52:1,51:1:36:51:1816:-160.044,-12.0553,0	0/1:17:4,13:4:140:13:464:-36.9089,0,-7.82139	0/1:13:10,3:10:352:3:108:-6.16178,0,-28.1048	0/1:16:13,3:13:464:3:108:-5.25869,0,-37.281	0/1:44:20,24:20:716:24:847:-63.3034,0,-51.5224	0/1:63:27,36:27:968:36:1247:-93.5573,0,-68.4725	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:48:14,34:14:504:34:1204:-94.2146,0,-31.2487	1/1:78:0,78:0:0:78:2725:-245.374,-23.4803,0	1/1:20:0,20:0:0:20:703:-63.5935,-6.0206,0	1/1:20:0,20:0:0:20:699:-63.2218,-6.0206,0	0/1:72:41,31:41:1467:31:1082:-75.8553,0,-110.637	1/1:68:0,68:0:0:68:2379:-214.15,-20.47,0	1/1:13:0,13:0:0:13:447:-40.5379,-3.91339,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:33:0,33:0:0:33:1163:-104.975,-9.93399,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:41:10,31:10:360:31:1094:-86.4236,0,-20.4021	1/1:33:0,33:0:0:33:1167:-105.323,-9.93399,0	1/1:92:1,91:1:36:91:3228:-287.146,-24.0965,0	1/1:29:0,29:0:0:29:1040:-93.9098,-8.72987,0	1/1:63:0,63:0:0:63:2243:-202.125,-18.9649,0	1/1:26:0,26:0:0:26:915:-82.6594,-7.82678,0	1/1:12:0,12:0:0:12:424:-38.4902,-3.61236,0	1/1:49:0,49:0:0:49:1752:-157.943,-14.7505,0	0/1:39:12,27:12:428:27:952:-74.255,0,-27.1186	0/1:60:30,30:30:1072:30:1067:-78.2688,0,-78.7307	1/1:79:0,79:0:0:79:2777:-248.964,-23.7814,0	1/1:31:0,31:0:0:31:1091:-98.4899,-9.33193,0	0/1:28:11,17:11:396:17:603:-46.1707,0,-27.5539	0/1:85:39,46:39:1391:46:1611:-119.68,0,-99.9007	1/1:25:0,25:0:0:25:871:-78.7055,-7.52575,0	0/1:49:28,21:28:996:21:748:-52.8863,0,-75.2044	0/1:48:23,25:23:815:25:870:-64.1636,0,-59.2213	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:53:25,28:25:900:28:992:-73.6316,0,-65.3664	0/1:42:27,15:27:972:15:536:-35.9269,0,-75.1546	1/1:33:0,33:0:0:33:1168:-105.406,-9.93399,0	1/1:56:0,56:0:0:56:1961:-176.743,-16.8577,0
chr10	2173181	.	C	G	130496	PASS	AB=0.488432;ABP=8.38569;AC=135;AF=0.718085;AN=188;AO=6250;CIGAR=1X;DP=8771;DPB=8771;DPRA=0;EPP=13444.7;EPPR=5388.43;GTI=0;LEN=1;MEANALT=1.10638;MQM=59.9675;MQMR=60;NS=94;NUMALT=1;ODDS=0.201581;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223453;QR=89594;RO=2508;RPL=15;RPP=13444.7;RPPR=5388.43;RPR=6235;RUN=1;SAF=6250;SAP=13574.7;SAR=0;SRF=2508;SRP=5449.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:32,28:32:1148:28:1000:-72.2536,0,-85.568	1/1:101:0,101:0:0:101:3620:-326.005,-30.404,0	0/1:53:19,34:19:676:34:1216:-93.7914,0,-45.2134	0/1:153:98,55:98:3500:55:1968:-131.337,0,-269.154	0/1:81:30,51:30:1080:51:1828:-140.418,0,-73.1298	0/1:61:35,26:35:1252:26:906:-63.4082,0,-94.6222	0/1:124:75,49:75:2688:49:1756:-120.996,0,-204.837	0/1:143:110,33:110:3948:33:1171:-62.6494,0,-312.463	0/1:130:61,69:61:2184:69:2480:-184.319,0,-157.692	0/1:147:61,86:61:2184:86:3092:-234.255,0,-152.575	0/1:41:20,21:20:708:21:756:-56.025,0,-51.7034	0/1:76:33,43:33:1184:43:1540:-116.015,0,-83.99	1/1:104:0,104:0:0:104:3702:-333.374,-31.3071,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	1/1:57:0,57:0:0:57:2044:-184.227,-17.1587,0	0/0:28:27,1:27:972:1:36:0,-4.83056,-84.1996	1/1:76:0,76:0:0:76:2702:-243.424,-22.8783,0	0/1:37:21,16:21:748:16:568:-40.3132,0,-56.5072	0/1:141:77,64:77:2739:64:2273:-162.386,0,-204.308	0/1:166:80,86:80:2868:86:3084:-227.817,0,-208.386	0/1:110:61,49:61:2192:49:1752:-124.851,0,-164.432	1/1:86:0,86:0:0:86:3072:-276.683,-25.8886,0	1/1:128:6,122:6:216:122:4367:-373.408,-18.7413,0	0/1:73:35,38:35:1256:38:1364:-101.081,0,-91.3701	1/1:320:0,318:0:0:318:11361:-1022.01,-95.7275,0	1/1:151:1,150:1:36:150:5380:-480.732,-41.8573,0	0/1:34:13,21:13:459:21:756:-58.1322,0,-31.4091	0/1:220:100,120:100:3562:120:4279:-319.062,0,-254.562	0/1:157:89,68:89:3179:68:2435:-172.144,0,-239.072	1/1:111:2,109:2:72:109:3907:-344.796,-26.5776,0	1/1:8:0,7:0:0:7:252:-22.6691,-2.10721,0	0/1:15:10,5:10:360:5:171:-11.21,0,-28.2289	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:307:1,306:1:36:306:10963:-982.965,-88.8179,0	0/1:197:79,118:79:2823:118:4201:-318.967,0,-195.006	0/0:39:37,1:37:1310:1:36:0,-8.20069,-114.602	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:113:58,55:58:2067:55:1965:-143.107,0,-152.284	0/1:30:13,17:13:464:17:612:-46.3825,0,-33.0666	0/1:89:43,46:43:1540:46:1644:-121.457,0,-112.101	0/1:79:36,43:36:1279:43:1548:-115.832,0,-91.6311	1/1:68:0,68:0:0:68:2417:-217.785,-20.47,0	0/1:109:55,54:55:1959:54:1925:-140.713,0,-143.773	1/1:86:0,86:0:0:86:3075:-276.978,-25.8886,0	0/1:204:98,106:98:3512:106:3796:-280.428,0,-254.88	1/1:154:0,154:0:0:154:5508:-495.845,-46.3586,0	1/1:96:0,92:0:0:92:3300:-296.88,-27.6948,0	1/1:202:0,202:0:0:202:7205:-648.505,-60.8081,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:80:36,43:36:1284:43:1535:-114.301,0,-91.7223	1/1:60:1,59:1:36:59:2116:-187.11,-14.4635,0	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:101:0,101:0:0:101:3610:-325.105,-30.404,0	0/1:80:42,38:42:1504:38:1364:-98.9782,0,-111.572	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/1:24:13,11:13:464:11:392:-28.3953,0,-34.8728	0/1:68:39,29:39:1396:29:1040:-73.4443,0,-105.469	0/0:68:65,3:65:2336:3:108:0,-10.3949,-200.424	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:233:108,125:108:3837:125:4426:-328.371,0,-275.387	1/1:181:1,179:1:36:179:6416:-573.929,-50.947,0	1/1:24:0,24:0:0:24:848:-76.6397,-7.22472,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	0/1:132:64,68:64:2283:68:2440:-180.119,0,-165.995	1/1:41:1,40:1:36:40:1440:-126.299,-8.74396,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:67:2,64:2:68:64:2290:-199.897,-13.7634,0	1/1:98:0,98:0:0:98:3490:-314.255,-29.5009,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:121:62,58:62:2206:58:2079:-150.896,0,-162.321	1/1:105:0,105:0:0:105:3759:-338.509,-31.6082,0	1/1:114:0,114:0:0:114:4081:-367.476,-34.3174,0	1/1:143:0,143:0:0:143:5105:-459.593,-43.0473,0	1/1:150:0,150:0:0:150:5358:-482.352,-45.1545,0	1/1:86:0,85:0:0:85:3043:-273.739,-25.5876,0	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	1/1:111:0,111:0:0:111:3975:-357.939,-33.4143,0	0/1:119:64,55:64:2283:55:1974:-142.104,0,-169.909	0/1:234:155,79:155:5556:79:2824:-183.958,0,-429.722	1/1:142:0,142:0:0:142:5080:-457.343,-42.7463,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:113:46,67:46:1639:67:2391:-181.43,0,-113.782	0/1:200:93,107:93:3310:107:3823:-284.033,0,-237.913	1/1:54:0,54:0:0:54:1915:-172.627,-16.2556,0	0/1:76:48,28:48:1715:28:1004:-67.7976,0,-131.757	0/1:72:29,43:29:1018:43:1538:-117.039,0,-70.2563	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:96:38,58:38:1355:58:2067:-157.401,0,-93.3508	0/1:81:61,20:61:2167:20:720:-40.7453,0,-170.913	1/1:81:0,81:0:0:81:2887:-260.067,-24.3834,0	1/1:121:0,121:0:0:121:4327:-389.601,-36.4246,0
chr10	2173207	.	TCATC	TCATA	129680	PASS	AB=0.485622;ABP=11.3775;AC=135;AF=0.718085;AN=188;AO=6253;CIGAR=4M1X;DP=8825;DPB=8825;DPRA=0;EPP=13581.2;EPPR=5466.45;GTI=0;LEN=1;MEANALT=1.42553;MQM=59.9821;MQMR=59.9948;NS=94;NUMALT=1;ODDS=0.303046;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223707;QR=87412;RO=2524;RPL=6253;RPP=13581.2;RPPR=5466.45;RPR=0;RUN=1;SAF=6253;SAP=13581.2;SAR=0;SRF=2524;SRP=5483.81;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:32,28:32:1096:28:999:-72.1627,0,-80.881	1/1:99:0,98:0:0:98:3511:-315.928,-29.5009,0	0/1:53:19,34:19:649:34:1224:-94.5124,0,-42.7749	0/1:155:98,56:98:3412:56:2008:-134.275,0,-260.582	0/1:80:30,49:30:1067:49:1734:-132.223,0,-72.2207	0/1:61:35,22:35:1226:22:788:-53.751,0,-93.1511	0/1:126:75,51:75:2624:51:1828:-126.871,0,-198.479	0/1:142:110,31:110:3813:31:1108:-57.226,0,-300.571	0/1:131:60,70:60:2058:70:2484:-184.318,0,-145.995	0/1:149:62,87:62:2172:87:3124:-236.532,0,-150.893	0/1:41:20,20:20:694:20:720:-52.7277,0,-50.3816	0/1:79:34,44:34:1175:44:1576:-118.37,0,-82.2908	1/1:102:0,102:0:0:102:3637:-327.526,-30.7051,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:79:0,79:0:0:79:2816:-253.68,-23.7814,0	1/1:57:0,55:0:0:55:1976:-177.798,-16.5567,0	0/0:30:29,1:29:993:1:36:0,-5.43262,-86.0786	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	0/1:39:21,17:21:690:17:612:-43.6239,0,-50.6201	0/1:143:78,64:78:2688:64:2288:-163.223,0,-199.209	0/1:166:80,86:80:2782:86:3092:-228.536,0,-200.653	0/1:110:61,49:61:2126:49:1748:-124.491,0,-158.494	1/1:85:2,81:2:72:81:2904:-254.785,-18.4805,0	1/1:127:6,121:6:206:121:4326:-370.638,-19.3545,0	0/1:72:36,36:36:1247:36:1296:-95.2652,0,-90.8561	1/1:323:0,322:0:0:322:11509:-1035.46,-96.9317,0	1/1:148:0,148:0:0:148:5272:-474.615,-44.5524,0	0/1:35:14,21:14:481:21:748:-57.1092,0,-33.08	0/1:224:101,123:101:3493:123:4400:-328.742,0,-247.155	0/1:158:88,70:88:3027:70:2512:-178.769,0,-225.102	1/1:111:2,107:2:72:107:3828:-337.898,-26.3166,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:15:10,5:10:356:5:180:-12.0366,0,-27.8661	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:305:0,303:0:0:303:10806:-972.086,-91.2121,0	0/1:196:79,116:79:2704:116:4136:-313.415,0,-184.605	0/0:41:39,2:39:1336:2:72:0,-5.50551,-113.699	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:113:58,55:58:1989:55:1976:-144.098,0,-145.267	0/1:31:13,18:13:439:18:644:-48.9587,0,-30.5005	0/1:91:42,43:42:1438:43:1539:-112.879,0,-103.789	0/1:81:37,44:37:1307:44:1566:-116.847,0,-93.5483	1/1:71:0,71:0:0:71:2535:-228.398,-21.3731,0	0/1:113:55,56:55:1916:56:2000:-146.518,0,-138.961	1/1:89:0,88:0:0:88:3141:-282.606,-26.4906,0	0/1:207:98,109:98:3391:109:3895:-288.427,0,-243.1	1/1:156:0,156:0:0:156:5608:-504.839,-46.9607,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	1/1:208:0,206:0:0:206:7384:-664.246,-62.0122,0	0/1:6:1,4:1:36:4:144:-11.4486,0,-1.7333	0/1:79:35,43:35:1223:43:1536:-114.693,0,-86.5324	1/1:63:1,60:1:36:60:2147:-189.933,-15.1061,0	0/1:13:8,5:8:285:5:180:-12.6387,0,-22.0811	1/1:102:0,102:0:0:102:3626:-326.539,-30.7051,0	0/1:82:44,38:44:1507:38:1364:-98.3759,0,-111.234	0/1:18:7,11:7:250:11:396:-30.5642,0,-17.4282	0/1:24:13,11:13:457:11:392:-28.3953,0,-34.2393	0/1:68:38,30:38:1338:30:1080:-77.0432,0,-100.249	0/0:72:69,2:69:2402:2:72:0,-14.8363,-209.631	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:232:108,124:108:3775:124:4444:-330.291,0,-270.115	1/1:183:2,181:2:68:181:6488:-577.546,-48.6308,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	0/1:132:66,65:66:2289:65:2320:-169.266,0,-166.469	1/1:39:1,38:1:31:38:1360:-119.601,-8.64072,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:65:2,62:2:67:62:2224:-194.078,-13.2014,0	1/1:98:0,98:0:0:98:3496:-314.839,-29.5009,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:121:62,59:62:2153:59:2095:-152.395,0,-157.612	1/1:108:0,107:0:0:107:3815:-343.218,-32.2102,0	1/1:112:0,112:0:0:112:4004:-360.55,-33.7154,0	1/1:142:0,142:0:0:142:5096:-458.782,-42.7463,0	1/1:150:0,150:0:0:150:5375:-483.88,-45.1545,0	1/1:88:1,86:1:36:86:3084:-274.189,-22.9512,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:112:0,111:0:0:111:3956:-355.873,-33.4143,0	0/1:120:65,55:65:2228:55:1970:-141.449,0,-164.658	0/1:236:154,81:154:5313:81:2888:-189.055,0,-407.221	1/1:142:0,141:0:0:141:5058:-455.004,-42.4452,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	0/1:117:47,69:47:1635:69:2472:-187.543,0,-112.247	0/1:200:93,106:93:3244:106:3795:-281.483,0,-231.921	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:74:46,28:46:1615:28:1000:-68.0392,0,-123.363	0/1:72:30,42:30:1000:42:1500:-113.62,0,-68.6301	0/1:14:7,7:7:231:7:252:-18.8145,0,-16.8981	0/1:96:37,59:37:1252:59:2112:-161.45,0,-84.0771	0/1:83:62,21:62:2166:21:752:-43.0208,0,-170.223	1/1:80:0,80:0:0:80:2860:-257.638,-24.0824,0	1/1:122:0,122:0:0:122:4376:-394.008,-36.7257,0
chr10	2173286	.	G	A	25943.3	PASS	AB=0.493927;ABP=4.03889;AC=49;AF=0.266304;AN=184;AO=1594;CIGAR=1X;DP=6030;DPB=6030;DPRA=1.02703;EPP=3464.34;EPPR=9635.66;GTI=0;LEN=1;MEANALT=1;MQM=59.9674;MQMR=60;NS=92;NUMALT=1;ODDS=3.32504;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56410;QR=157767;RO=4436;RPL=0;RPP=3464.34;RPPR=9635.66;RPR=1594;RUN=1;SAF=0;SAP=3464.34;SAR=1594;SRF=0;SRP=9635.66;SRR=4436;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:19,31:19:662:31:1100:-84.2588,0,-44.8509	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.793	0/1:81:37,44:37:1324:44:1564:-116.668,0,-95.0787	0/1:130:52,78:52:1868:78:2780:-211.308,0,-129.265	0/1:30:18,12:18:648:12:423:-29.3742,0,-49.621	0/1:55:34,21:34:1203:21:756:-51.8106,0,-92.0184	0/1:91:41,50:41:1459:50:1757:-131.018,0,-104.212	0/1:85:41,44:41:1463:44:1568:-115.821,0,-106.378	0/1:98:52,46:52:1860:46:1636:-118.026,0,-138.179	0/1:74:32,42:32:1134:42:1489:-112.026,0,-80.091	0/1:36:19,17:19:680:17:606:-44.034,0,-50.6921	0/1:77:34,43:34:1212:43:1535:-115.263,0,-86.207	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.983	0/0:70:70,0:70:2468:0:0:0,-21.0721,-222.373	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.306	0/1:24:7,17:7:252:17:608:-47.8273,0,-15.8042	0/1:61:29,32:29:1006:32:1121:-82.8323,0,-72.4838	0/1:83:46,37:46:1608:37:1302:-92.4943,0,-120.021	0/1:59:32,27:32:1135:27:959:-68.8646,0,-84.6973	0/0:104:104,0:104:3709:0:0:0,-31.3071,-334.011	0/0:77:74,3:74:2640:3:108:0,-13.1041,-227.772	0/1:51:21,30:21:747:30:1054:-79.8167,0,-52.2018	0/0:172:172,0:172:6130:0:0:0,-51.7772,-551.802	0/0:114:114,0:114:4081:0:0:0,-34.3174,-367.474	0/1:23:11,12:11:396:12:424:-31.5727,0,-29.0591	0/1:96:51,45:51:1828:45:1603:-115.661,0,-135.902	0/1:96:63,33:63:2255:33:1153:-75.1751,0,-174.313	0/0:98:98,0:98:3502:0:0:0,-29.5009,-315.39	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	.:.:.:.:.:.:.:.	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:137:137,0:137:4886:0:0:0,-41.2411,-439.893	0/1:88:50,38:50:1773:38:1338:-94.2278,0,-133.36	0/1:35:15,20:15:528:20:698:-52.6059,0,-37.3153	.:.:.:.:.:.:.:.	0/1:53:27,26:27:957:26:924:-67.5231,0,-70.4893	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	0/1:88:41,47:41:1445:47:1665:-123.646,0,-103.853	0/1:41:26,15:26:928:15:536:-35.451,0,-71.496	0/0:41:41,0:41:1447:0:0:0,-12.3422,-130.525	0/1:79:40,39:40:1406:39:1373:-100.086,0,-103.052	0/0:58:58,0:58:2052:0:0:0,-17.4597,-184.949	0/1:111:57,54:57:2052:54:1869:-135.066,0,-151.537	0/0:151:151,0:151:5387:0:0:0,-45.4555,-484.96	0/0:70:69,1:69:2460:1:36:0,-17.4738,-218.057	0/0:136:136,0:136:4848:0:0:0,-40.9401,-436.476	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:60:33,27:33:1175:27:956:-68.2939,0,-87.9952	0/0:72:72,0:72:2541:0:0:0,-21.6742,-228.941	0/1:18:12,6:12:424:6:216:-14.372,0,-33.0779	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.384	0/1:73:43,30:43:1531:30:1026:-70.6681,0,-116.107	0/1:8:3,5:3:108:5:171:-13.3172,0,-7.66693	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:207:95,112:95:3371:112:4008:-298.596,0,-241.295	0/1:52:26,26:26:917:26:919:-67.3726,0,-67.191	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:85:37,48:37:1310:48:1719:-129.408,0,-92.6125	0/0:114:114,0:114:4046:0:0:0,-34.3174,-364.327	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:22:22,0:22:775:0:0:0,-6.62266,-70.0712	0/1:97:60,37:60:2142:37:1328:-90.6223,0,-163.846	0/0:115:115,0:115:4112:0:0:0,-34.6184,-370.265	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/0:40:40,0:40:1405:0:0:0,-12.0412,-126.745	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:132:82,50:82:2873:50:1768:-119.667,0,-219.07	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.623	0/0:182:182,0:182:6419:0:0:0,-54.7875,-577.805	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/0:75:75,0:75:2666:0:0:0,-22.5772,-240.185	0/0:63:60,3:60:2116:3:108:0,-8.88972,-180.632	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/1:54:40,14:40:1424:14:500:-29.0806,0,-112.202	0/1:145:90,55:90:3232:55:1932:-130.505,0,-247.452	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/1:35:16,19:16:564:19:667:-49.8186,0,-40.5543	0/1:104:43,61:43:1536:61:2137:-161.286,0,-107.226	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:47:17,30:17:595:30:1067:-82.1928,0,-39.7283	0/1:57:23,34:23:828:34:1196:-90.7853,0,-57.6854	0/1:43:21,22:21:739:22:777:-57.3061,0,-53.8881	0/1:92:44,48:44:1571:48:1698:-125.41,0,-113.986	0/1:48:13,35:13:464:35:1241:-97.5431,0,-27.6481	0/0:92:91,1:91:3240:1:27:0,-24.995,-289.12	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.631
chr10	2183764	.	TCTT	GCTT,GCTC	184556	PASS	AB=0.64859,0.351212;ABP=968.404,970.987;AC=147,39;AF=0.790323,0.209677;AN=186;AO=7603,1845;CIGAR=1X3M,1X2M1X;DP=9453;DPB=9455.75;DPRA=0,1.63046;EPP=16495.3,4009.38;EPPR=0;GTI=8;LEN=1,4;MEANALT=1.65591,2.05357;MQM=54.335,26.0602;MQMR=0;NS=93;NUMALT=2;ODDS=0.382856;PAIRED=0,0;PAIREDR=0;PAO=1,9;PQA=0,316;PQR=0;PRO=1;QA=271890,65499;QR=0;RO=0;RPL=0,0;RPP=16512.7,4009.38;RPPR=0;RPR=7603,1845;RUN=1,1;SAF=7601,1845;SAP=16495.3,4009.38;SAR=2,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1076,0:-96.9126,-9.0309,0,-96.9126,-9.0309,-96.9126	1/1:136:0,136,0:0:0:136,0:4880,0:-437.712,-40.9401,0,-437.712,-40.9401,-437.712	1/2:152:0,100,52:0:0:100,52:3581,1839:-394.323,-103.73,-73.627,-290.882,0,-275.228	1/2:272:0,157,115:0:0:157,115:5600,4075:-676.604,-220.869,-173.607,-455.772,0,-421.153	1/1:43:0,41,2:0:0:41,2:1464,71:-131.168,-12.3422,0,-127.342,-8.26493,-126.74	1/1:38:0,37,1:0:0:37,1:1332,36:-118.963,-11.1381,0,-116.026,-7.84087,-115.725	1/2:128:0,104,24:0:0:104,24:3732,858:-351.107,-46.9456,-15.6385,-304.176,0,-296.951	1/2:171:0,141,30:0:0:141,30:5056,1062:-470.361,-60.0468,-17.6016,-410.587,0,-401.556	1/2:112:0,77,35:0:0:77,35:2741,1242:-292.164,-69.93,-46.7507,-222.52,0,-211.984	1/2:169:0,107,61:0:0:107,61:3836,2182:-432.287,-119.773,-87.5625,-312.502,0,-294.139	1/2:61:0,36,25:0:0:36,25:1286,880:-153.399,-49.0115,-38.1744,-104.681,0,-97.1554	1/2:124:0,73,51:0:0:73,51:2624,1798:-315.453,-102.561,-80.5858,-213.19,0,-197.838	1/1:67:0,67,0:0:0:67,0:2389,0:-214.446,-20.169,0,-214.446,-20.169,-214.446	1/1:69:0,69,0:0:0:69,0:2464,0:-221.448,-20.7711,0,-221.448,-20.7711,-221.448	1/1:60:0,60,0:0:0:60,0:2136,0:-192.173,-18.0618,0,-192.173,-18.0618,-192.173	1/1:34:0,34,0:0:0:34,0:1220,0:-109.702,-10.235,0,-109.702,-10.235,-109.702	1/2:85:0,67,18:0:0:67,18:2397,647:-230.802,-36.2792,-16.1102,-194.8,0,-189.381	1/1:50:0,50,0:0:0:50,0:1796,0:-160.749,-15.0515,0,-160.749,-15.0515,-160.749	1/2:45:0,31,14:0:0:31,14:1104,496:-117.316,-28.1497,-18.8178,-89.4512,0,-85.2368	1/2:218:0,188,30:0:0:188,30:6705,1060:-604.158,-58.552,-1.95837,-545.87,0,-536.839	1/2:201:0,87,114:0:0:87,114:3105,4074:-472.701,-221.022,-194.832,-251.988,0,-217.671	1/1:48:0,44,4:0:0:44,4:1572,144:-141.207,-13.2453,0,-133.539,-5.32189,-132.335	1/1:58:0,58,0:0:0:58,0:2088,0:-187.765,-17.4597,0,-187.765,-17.4597,-187.765	1/1:139:0,123,15:0:0:123,15:4410,534:-395.707,-37.0267,0,-367.009,-8.40763,-362.493	1/1:26:0,24,2:0:0:24,2:860,72:-77.108,-7.22472,0,-73.278,-3.13966,-72.676	1/1:388:0,387,1:0:0:387,1:13877,36:-1247.38,-116.499,0,-1245.46,-114.333,-1245.16	1/1:145:0,145,0:0:0:145,0:5196,0:-466.639,-43.6494,0,-466.639,-43.6494,-466.639	1/2:39:0,22,17:0:0:22,17:792,598:-98.2308,-33.7736,-27.1509,-64.756,0,-59.6385	1/2:296:0,173,123:0:0:173,123:6174,4376:-741.193,-238.255,-186.177,-502.974,0,-465.948	1/2:209:0,179,30:0:0:179,30:6409,1067:-579.94,-59.2371,-5.35272,-520.72,0,-511.689	1/1:138:0,138,0:0:0:138,0:4922,0:-442.143,-41.5421,0,-442.143,-41.5421,-442.143	1/1:1:0,1,0:0:0:1,0:36,0:-3.59317,-0.30103,0,-3.59317,-0.30103,-3.59317	1/2:9:0,7,2:0:0:7,2:252,72:-24.7024,-4.08506,-1.97785,-20.8891,0,-20.287	1/1:6:0,6,0:0:0:6,0:208,0:-19.017,-1.80618,0,-19.017,-1.80618,-19.017	1/1:1:0,1,0:0:0:1,0:36,0:-3.58923,-0.30103,0,-3.58923,-0.30103,-3.58923	.:.:.:.:.:.:.:.	1/1:192:0,191,1:0:0:191,1:6845,36:-615.115,-57.4967,0,-612.195,-54.219,-611.894	1/1:179:0,163,15:0:0:163,15:5822,530:-522.146,-49.0679,0,-493.49,-20.5053,-488.975	1/2:63:0,35,28:0:0:35,28:1260,999:-158.571,-56.1786,-45.6426,-102.694,0,-94.2651	1/1:1:0,1,0:0:0:1,0:36,0:-3.59317,-0.30103,0,-3.59317,-0.30103,-3.59317	1/2:171:0,120,51:0:0:120,51:4281,1832:-447.985,-100.219,-64.0957,-348.048,0,-332.695	1/2:22:0,14,8:0:0:14,8:500,286:-56.2251,-15.6635,-11.449,-40.8482,0,-38.4399	1/1:60:0,56,4:0:0:56,4:2012,144:-180.825,-16.8577,0,-173.155,-8.93425,-171.951	1/2:91:0,60,31:0:0:60,31:2129,1108:-233.007,-59.6473,-41.5855,-173.642,0,-164.31	1/1:54:0,54,0:0:0:54,0:1940,0:-174.62,-16.2556,0,-174.62,-16.2556,-174.62	1/1:89:0,77,12:0:0:77,12:2744,423:-246.523,-23.1793,0,-223.623,-0.0190317,-220.01	1/1:85:0,85,0:0:0:85,0:3041,0:-272.318,-25.5876,0,-272.318,-25.5876,-272.318	1/2:172:0,131,41:0:0:131,41:4666,1459:-459.13,-80.5655,-41.1305,-378.84,0,-366.498	1/1:91:0,91,0:0:0:91,0:3242,0:-291.78,-27.3937,0,-291.78,-27.3937,-291.78	1/1:122:0,122,0:0:0:122,0:4354,0:-391.373,-36.7257,0,-391.373,-36.7257,-391.373	1/1:109:0,109,0:0:0:109,0:3881,0:-349,-32.8123,0,-349,-32.8123,-349	1/2:9:0,7,2:0:0:7,2:248,72:-24.3563,-4.08506,-1.97785,-20.5418,0,-19.9397	1/1:98:0,87,11:0:0:87,11:3101,393:-277.715,-26.1896,0,-255.733,-3.94137,-252.422	1/1:50:0,50,0:0:0:50,0:1792,0:-161.265,-15.0515,0,-161.265,-15.0515,-161.265	1/2:10:0,3,7:0:0:3,7:108,252:-22.9038,-14.2685,-13.3654,-8.95856,0,-6.85135	1/1:95:0,95,0:0:0:95,0:3381,0:-303.427,-28.5979,0,-303.427,-28.5979,-303.427	1/2:26:0,18,8:0:0:18,8:648,284:-68.3044,-15.5648,-10.1462,-53.0204,0,-50.6121	1/1:9:0,8,1:0:0:8,1:279,36:-24.9094,-2.40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chr10	2183775	.	T	A	9438.02	PASS	AB=0.360491;ABP=843.367;AC=39;AF=0.209677;AN=186;AO=1887;CIGAR=1X;DP=9543;DPB=9543;DPRA=1.56092;EPP=4100.58;EPPR=16597.4;GTI=7;LEN=1;MEANALT=1.05455;MQM=26.1426;MQMR=54.3026;NS=93;NUMALT=1;ODDS=0.828129;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67501;QR=274083;RO=7650;RPL=0;RPP=4100.58;RPPR=16614.8;RPR=1887;RUN=1;SAF=1887;SAP=4100.58;SAR=0;SRF=7648;SRP=16597.4;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:32,1:32:1152:1:36:0,-7.56046,-101.362	0/0:135:135,0:135:4844:0:0:0,-40.639,-434.512	0/1:154:101,53:101:3632:53:1885:-75.4864,0,-278.719	0/1:276:160,116:160:5736:116:4130:-174.758,0,-432.372	0/0:44:42,2:42:1500:2:72:0,-8.5582,-129.966	0/0:39:38,1:38:1368:1:36:0,-8.14189,-117.009	0/1:133:108,25:108:3863:25:885:-16.3585,0,-307.479	0/1:176:143,33:143:5140:33:1188:-25.1457,0,-407.475	0/1:117:77,39:77:2747:39:1366:-54.1235,0,-211.24	0/1:173:111,62:111:3973:62:2201:-88.46,0,-305.242	0/1:59:35,24:35:1252:24:845:-36.3641,0,-94.3931	0/1:123:71,52:71:2539:52:1864:-84.6018,0,-190.703	0/0:68:68,0:68:2435:0:0:0,-20.47,-218.214	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.212	0/0:59:59,0:59:2120:0:0:0,-17.7608,-190.73	0/0:33:32,1:32:1152:1:36:0,-6.4795,-100.265	0/1:85:66,19:66:2368:19:680:-18.5324,0,-186.792	0/0:51:50,0:50:1796:0:0:0,-15.0515,-160.596	0/1:44:30,14:30:1080:14:504:-19.2503,0,-83.6473	0/0:220:191,29:191:6855:29:1036:0,-1.67623,-551.051	0/1:200:86,114:86:3096:114:4062:-194.866,0,-217.149	0/0:51:47,4:47:1672:4:144:0,-6.22498,-141.11	0/0:59:59,0:59:2124:0:0:0,-17.7608,-190.917	0/0:142:126,16:126:4524:16:576:0,-6.73208,-369.743	0/0:26:24,2:24:864:2:72:0,-3.13966,-73.0339	0/0:395:394,1:394:14117:1:36:0,-116.44,-1266.59	0/0:147:147,0:147:5251:0:0:0,-44.2514,-471.462	0/1:39:21,18:21:752:18:648:-30.6026,0,-55.9448	0/1:299:174,125:174:6232:125:4466:-189.455,0,-470.405	0/1:210:179,31:179:6399:31:1112:-7.16383,0,-510.346	0/0:140:140,0:140:5032:0:0:0,-42.1442,-451.526	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/1:9:7,2:7:252:2:72:-1.97785,0,-20.287	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7351	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	.:.:.:.:.:.:.:.	0/0:191:191,0:191:6839:0:0:0,-57.4967,-614.727	0/0:178:163,15:163:5852:15:540:0,-20.0334,-491.45	0/1:64:35,29:35:1256:29:1044:-47.9325,0,-93.6066	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/1:172:121,51:121:4313:51:1836:-63.8242,0,-335.389	0/1:22:13,9:13:468:9:324:-13.935,0,-35.4643	0/0:61:57,4:57:2044:4:144:0,-9.23528,-174.821	0/1:91:60,31:60:2151:31:1116:-41.6796,0,-166.241	0/0:53:53,0:53:1899:0:0:0,-15.9546,-170.936	0/1:89:74,12:74:2644:12:432:-0.678134,0,-211.691	0/0:85:85,0:85:3040:0:0:0,-25.5875,-272.144	0/1:170:129,40:129:4613:40:1440:-38.8545,0,-360.855	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.757	0/0:125:125,0:125:4464:0:0:0,-37.6287,-401.26	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.145	0/1:9:7,2:7:252:2:72:-1.97785,0,-20.3031	0/0:98:86,12:86:3080:12:417:0,-2.03543,-248.811	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.231	0/1:11:4,7:4:144:7:252:-13.0644,0,-9.78231	0/0:97:97,0:97:3472:0:0:0,-29.1999,-311.53	0/1:27:19,8:19:684:8:284:-9.83891,0,-53.2286	0/0:9:8,1:8:288:1:36:0,-0.242364,-22.9202	0/1:21:11,10:11:396:10:356:-17.1152,0,-29.5955	0/1:97:79,18:79:2836:18:644:-10.9693,0,-224.922	0/1:163:115,48:115:4115:48:1724:-59.209,0,-321.077	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83179	0/1:382:237,145:237:8484:145:5212:-210.569,0,-647.571	0/0:175:175,0:175:6280:0:0:0,-52.6802,-563.927	0/0:98:98,0:98:3516:0:0:0,-29.5009,-315.605	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.273	0/1:180:114,66:114:4088:66:2353:-94.5489,0,-312.748	0/0:103:101,2:101:3620:2:72:0,-26.319,-320.982	0/0:18:18,0:18:648:0:0:0,-5.41854,-57.8913	0/0:73:73,0:73:2612:0:0:0,-21.9752,-234.385	0/0:78:78,0:78:2788:0:0:0,-23.4803,-250.936	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.248	0/1:138:80,58:80:2868:58:2076:-93.8527,0,-215.861	0/0:83:83,0:83:2980:0:0:0,-24.9855,-266.585	0/0:161:161,0:161:5757:0:0:0,-48.4658,-516.924	0/0:142:142,0:142:5088:0:0:0,-42.7463,-457.222	0/0:55:55,0:55:1968:0:0:0,-16.5566,-176.497	0/0:79:76,3:76:2724:3:108:0,-16.617,-237.315	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.8923	0/0:99:99,0:99:3552:0:0:0,-29.802,-318.79	0/1:117:80,37:80:2876:37:1332:-51.4992,0,-222.778	0/1:353:191,162:191:6829:162:5794:-256.04,0,-506.527	0/0:106:106,0:106:3812:0:0:0,-31.9092,-342.712	0/0:53:53,0:53:1899:0:0:0,-15.9546,-170.932	0/1:110:70,40:70:2503:40:1428:-56.8485,0,-191.682	0/1:208:113,95:113:4024:95:3416:-151.653,0,-298.812	0/0:59:59,0:59:2120:0:0:0,-17.7608,-189.977	0/1:94:53,41:53:1900:41:1468:-67.0755,0,-142.329	0/1:92:39,53:39:1392:53:1908:-97.578,0,-97.0889	0/1:34:20,14:20:720:14:504:-22.2034,0,-54.6759	0/1:91:63,28:63:2240:28:1008:-36.3675,0,-173.517	0/1:139:78,61:78:2804:61:2173:-93.9463,0,-209.254	0/0:133:132,1:132:4704:1:36:0,-37.5701,-420.46	0/0:77:77,0:77:2734:0:0:0,-23.1793,-245.948
chr10	2183781	.	A	G	159381	PASS	AB=0.637318;ABP=814.068;AC=147;AF=0.790323;AN=186;AO=7634;CIGAR=1X;DP=9525;DPB=9525;DPRA=0;EPP=16562.7;EPPR=4100.58;GTI=7;LEN=1;MEANALT=1.04301;MQM=54.2928;MQMR=26.2374;NS=93;NUMALT=1;ODDS=0.727331;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272213;QR=67690;RO=1887;RPL=0;RPP=16580;RPPR=4100.58;RPR=7634;RUN=1;SAF=7632;SAP=16562.7;SAR=2;SRF=1887;SRP=4100.58;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:1,31:1:36:31:1112:-97.7765,-7.25943,0	1/1:135:0,135:0:0:135:4826:-432.944,-40.6391,0	0/1:153:53,100:53:1904:100:3573:-274.172,0,-76.3583	0/1:267:114,153:114:4096:153:5468:-411.187,0,-173.904	1/1:43:2,41:2:72:41:1472:-127.447,-8.25717,0	1/1:39:1,38:1:36:38:1364:-116.975,-8.1419,0	0/1:128:25,103:25:887:103:3683:-292.806,0,-18.123	0/1:176:33,143:33:1184:143:5103:-404.243,0,-26.0341	0/1:117:39,78:39:1396:78:2788:-214.514,0,-56.1176	0/1:174:63,110:63:2256:110:3944:-302.16,0,-91.4052	0/1:60:25,35:25:896:35:1235:-92.9855,0,-38.7547	0/1:125:52,73:52:1864:73:2595:-195.149,0,-83.9997	1/1:67:0,67:0:0:67:2392:-214.648,-20.169,0	1/1:70:0,69:0:0:69:2463:-220.976,-20.7711,0	1/1:59:0,59:0:0:59:2087:-187.805,-17.7608,0	1/1:34:0,34:0:0:34:1215:-109.253,-10.235,0	0/1:85:19,66:19:680:66:2347:-184.923,0,-18.5324	1/1:50:0,50:0:0:50:1787:-160.128,-15.0515,0	0/1:45:14,31:14:504:31:1087:-83.5096,0,-18.9492	1/1:218:28,190:28:1008:190:6761:-544.911,-3.21183,0	0/1:203:117,86:117:4204:86:3068:-213.854,0,-201.636	1/1:49:4,45:4:144:45:1616:-136.073,-5.62292,0	1/1:59:0,59:0:0:59:2120:-190.559,-17.7608,0	1/1:143:16,127:16:576:127:4522:-369.879,-7.03311,0	1/1:26:2,24:2:72:24:860:-72.676,-3.13966,0	1/1:390:2,387:2:72:387:13812:-1236.03,-111.68,0	1/1:147:0,147:0:0:147:5261:-472.503,-44.2514,0	0/1:41:18,23:18:648:23:801:-59.8303,0,-30.0005	0/1:297:126,171:126:4512:171:6100:-459.188,0,-193.573	0/1:210:32,178:32:1139:178:6318:-503.707,0,-9.98638	1/1:142:0,142:0:0:142:5054:-453.522,-42.7463,0	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:9:2,7:2:72:7:252:-20.287,0,-1.97785	1/1:6:0,6:0:0:6:212:-19.3743,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.58923,-0.30103,0	.:.:.:.:.:.:.:.	1/1:195:0,195:0:0:195:6957:-625.077,-58.7009,0	1/1:181:15,166:15:540:166:5918:-497.517,-20.9365,0	0/1:63:29,34:29:1040:34:1216:-90.504,0,-48.1832	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:171:51,120:51:1832:120:4281:-332.836,0,-64.084	0/1:23:9,14:9:324:14:500:-38.1389,0,-13.6339	1/1:59:4,55:4:144:55:1963:-167.555,-8.63322,0	0/1:89:30,59:30:1071:59:2105:-162.753,0,-39.8999	1/1:54:0,54:0:0:54:1915:-172.386,-16.2556,0	0/1:89:12,77:12:432:77:2764:-221.754,0,-0.0975996	1/1:84:0,84:0:0:84:3003:-268.922,-25.2865,0	0/1:169:40,129:40:1432:129:4607:-361.656,0,-40.1409	1/1:91:0,91:0:0:91:3248:-292.305,-27.3937,0	1/1:124:0,124:0:0:124:4425:-397.788,-37.3277,0	1/1:111:0,111:0:0:111:3956:-355.821,-33.4143,0	0/1:9:2,7:2:72:7:248:-19.9397,0,-1.97785	1/1:97:11,86:11:396:86:3076:-250.335,-3.61284,0	1/1:51:0,51:0:0:51:1815:-163.42,-15.3525,0	0/1:11:7,4:7:252:4:144:-9.78231,0,-13.0644	1/1:97:0,97:0:0:97:3431:-308.005,-29.1999,0	0/1:28:8,20:8:284:20:716:-55.9624,0,-9.53788	1/1:10:1,9:1:36:9:320:-25.7961,-0.543395,0	0/1:20:10,10:10:360:10:351:-25.8421,0,-17.4578	0/1:97:19,77:19:684:77:2723:-215.457,0,-14.2021	0/1:165:48,117:48:1720:117:4179:-326.126,0,-58.7296	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	0/1:379:145,234:145:5212:234:8321:-633.871,0,-212.491	1/1:178:0,178:0:0:178:6331:-569.105,-53.5833,0	1/1:99:0,99:0:0:99:3552:-318.714,-29.802,0	1/1:62:0,62:0:0:62:2203:-198.268,-18.6639,0	0/1:182:66,116:66:2376:116:4155:-318.115,0,-94.5226	1/1:104:2,102:2:72:102:3626:-321.505,-26.62,0	1/1:18:0,18:0:0:18:644:-57.5328,-5.41854,0	1/1:74:0,74:0:0:74:2660:-238.639,-22.2762,0	1/1:78:0,78:0:0:78:2783:-250.485,-23.4803,0	1/1:37:0,37:0:0:37:1285:-115.629,-11.1381,0	0/1:136:58,78:58:2080:78:2792:-209.622,0,-94.8145	1/1:84:0,84:0:0:84:2958:-265.567,-25.2865,0	1/1:158:0,158:0:0:158:5668:-509.013,-47.5627,0	1/1:140:0,140:0:0:140:5021:-451.217,-42.1442,0	1/1:54:0,54:0:0:54:1940:-174.337,-16.2556,0	1/1:76:3,73:3:108:73:2616:-227.833,-15.7139,0	1/1:11:0,11:0:0:11:396:-35.8923,-3.31133,0	1/1:99:0,99:0:0:99:3521:-315.99,-29.802,0	0/1:116:35,81:35:1241:81:2900:-225.245,0,-46.6	0/1:348:160,188:160:5740:188:6709:-497.65,0,-254.675	1/1:109:0,109:0:0:109:3866:-347.586,-32.8123,0	1/1:51:0,51:0:0:51:1816:-163.48,-15.3525,0	0/1:112:40,72:40:1436:72:2572:-197.307,0,-56.6278	0/1:210:97,113:97:3476:113:4043:-299.909,0,-155.578	1/1:60:0,60:0:0:60:2122:-190.184,-18.0618,0	0/1:92:41,51:41:1476:51:1815:-135.317,0,-67.7783	0/1:92:53,39:53:1900:39:1404:-98.1545,0,-97.4774	0/1:34:14,20:14:504:20:716:-54.3176,0,-22.2034	0/1:91:28,63:28:1004:63:2220:-171.481,0,-36.3262	0/1:136:60,76:60:2152:76:2654:-197.527,0,-93.0904	1/1:133:1,132:1:36:132:4723:-421.682,-37.5701,0	1/1:80:0,80:0:0:80:2842:-255.59,-24.0824,0
chr10	2184028	.	C	G	64659.5	PASS	AB=0.688098;ABP=1575.55;AC=50;AF=0.268817;AN=186;AO=3542;CIGAR=1X;DP=7825;DPB=7825;DPRA=1.87398;EPP=7685.68;EPPR=9277.38;GTI=19;LEN=1;MEANALT=1.03448;MQM=59.8416;MQMR=59.9133;NS=93;NUMALT=1;ODDS=1.76051;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126411;QR=152941;RO=4279;RPL=2;RPP=7677;RPPR=9268.7;RPR=3540;RUN=1;SAF=1;SAP=7685.68;SAR=3541;SRF=1;SRP=9286.06;SRR=4278;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:11,27:11:396:27:972:-76.3588,0,-24.5436	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:98:26,72:26:928:72:2580:-202.948,0,-54.3373	0/1:248:74,174:74:2664:174:6205:-483.866,0,-165.343	0/1:36:13,23:13:468:23:824:-63.6462,0,-31.6226	0/1:51:7,44:7:252:44:1556:-124.975,0,-7.67643	0/1:65:27,38:27:972:38:1360:-103.132,0,-68.231	0/1:131:44,87:44:1580:87:3116:-241.162,0,-103.057	0/1:162:52,110:52:1864:110:3932:-305.299,0,-119.272	0/1:146:35,110:35:1260:110:3913:-308.345,0,-69.6605	0/1:70:23,47:23:828:47:1671:-129.6,0,-53.7625	0/1:156:59,97:59:2116:97:3461:-264.633,0,-143.748	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:59:59,0:59:2099:0:0:0,-17.7608,-189.178	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.322	0/1:45:21,24:21:752:24:860:-64.1755,0,-54.4599	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:26:6,20:6:207:20:720:-57.302,0,-11.1401	0/1:129:31,98:31:1108:98:3512:-277.388,0,-61.1972	0/1:268:93,175:93:3336:175:6275:-483.78,0,-219.781	0/1:75:7,68:7:252:68:2418:-195.241,0,-0.451709	0/0:58:57,1:57:2040:1:36:0,-13.8615,-180.274	0/1:84:69,15:69:2476:15:540:-23.65,0,-197.807	0/1:34:13,21:13:464:21:746:-57.2276,0,-31.8609	0/0:153:153,0:153:5488:0:0:0,-46.0576,-494.01	0/0:137:136,1:136:4876:1:25:0,-38.7412,-436.492	0/1:55:15,40:15:540:40:1427:-112.167,0,-32.3799	0/1:295:89,206:89:3185:206:7360:-573.627,0,-197.44	0/1:76:23,53:23:824:53:1892:-147.68,0,-51.605	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.145	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:11:0,11:0:0:11:392:-35.6169,-3.31133,0	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:213:212,0:212:7580:0:0:0,-63.8184,-681.816	0/1:136:37,98:37:1320:98:3493:-273.535,0,-78.1032	0/1:55:17,38:17:604:38:1356:-105.712,0,-38.134	.:.:.:.:.:.:.:.	0/1:82:31,51:31:1112:51:1819:-139.306,0,-75.7069	0/1:42:20,22:20:712:22:779:-57.7873,0,-51.7634	0/1:99:29,70:29:1044:70:2497:-195.176,0,-64.4728	0/1:91:27,64:27:964:64:2273:-177.431,0,-59.6831	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:70:20,50:20:720:50:1765:-137.789,0,-44.0567	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/1:137:40,97:40:1428:97:3454:-269.825,0,-87.5764	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:79:79,0:79:2820:0:0:0,-23.7814,-253.966	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.742	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:96:23,73:23:824:73:2601:-205.438,0,-45.5692	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.5114	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:102:101,1:101:3601:1:36:0,-27.1068,-320.697	0/1:27:5,22:5:180:22:792:-63.4779,0,-8.42425	0/1:16:2,14:2:72:14:500:-40.5197,0,-2.02024	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:67:24,43:24:864:43:1540:-118.723,0,-57.912	0/1:181:63,118:63:2236:118:4209:-324.493,0,-147.014	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:386:99,287:99:3548:287:10232:-804.605,0,-203.329	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.425	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.785	0/0:36:35,1:35:1241:1:36:0,-7.2388,-108.389	0/1:142:45,97:45:1612:97:3468:-269.485,0,-102.624	0/0:79:78,1:78:2782:1:36:0,-20.1831,-247.022	0/0:36:35,1:35:1251:1:36:0,-7.2388,-109.296	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.802	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:94:36,58:36:1292:58:2054:-156.831,0,-88.2869	0/0:102:102,0:102:3616:0:0:0,-30.7051,-325.635	0/0:83:82,0:82:2924:0:0:0,-24.6845,-263.036	0/0:206:204,2:204:7313:2:72:0,-55.1755,-651.38	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:66:65,1:65:2309:1:36:0,-16.2697,-204.467	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1371	0/0:71:70,1:70:2492:1:36:0,-17.7749,-220.932	0/1:117:24,93:24:864:93:3299:-261.908,0,-42.8621	0/1:131:46,85:46:1652:85:3044:-234.721,0,-109.534	0/0:57:57,0:57:2030:0:0:0,-17.1587,-182.97	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.113	0/1:86:37,49:37:1328:49:1751:-131.94,0,-93.916	0/1:200:72,128:72:2584:128:4582:-352.333,0,-172.592	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/1:131:48,83:48:1703:83:2975:-228.546,0,-114.116	0/1:85:22,63:22:792:63:2223:-174.743,0,-46.0158	0/1:41:9,32:9:320:32:1152:-91.6464,0,-16.8001	0/1:172:52,120:52:1845:120:4290:-334.487,0,-114.493	0/1:127:23,104:23:811:104:3718:-296.59,0,-35.0792	0/0:114:114,0:114:4049:0:0:0,-34.3174,-364.587	0/0:117:117,0:117:4172:0:0:0,-35.2205,-375.661
chr10	2185403	.	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chr10	2199562	.	C	T	98979.8	PASS	AB=0.508329;ABP=5.18057;AC=139;AF=0.739362;AN=188;AO=4827;CIGAR=1X;DP=6605;DPB=6605;DPRA=0;EPP=10484.7;EPPR=3861.72;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9219;MQMR=59.9871;NS=94;NUMALT=1;ODDS=2.3844;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171198;QR=62671;RO=1777;RPL=4827;RPP=10484.7;RPPR=3861.72;RPR=0;RUN=1;SAF=4827;SAP=10484.7;SAR=0;SRF=1777;SRP=3861.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:21,10:21:744:10:360:-23.4124,0,-57.9524	1/1:57:0,57:0:0:57:2032:-183.152,-17.1587,0	0/1:76:32,44:32:1144:44:1553:-117.18,0,-80.3912	0/1:89:42,47:42:1483:47:1664:-123.026,0,-106.972	0/1:78:35,43:35:1256:43:1535:-114.962,0,-89.8649	0/1:41:19,22:19:665:22:785:-58.4414,0,-47.8306	0/1:106:48,58:48:1704:58:2063:-154.031,0,-121.737	0/1:97:45,52:45:1596:52:1844:-137.038,0,-114.73	0/1:79:28,51:28:977:51:1819:-140.209,0,-64.4589	0/1:73:35,38:35:1260:38:1364:-101.086,0,-91.7303	0/1:80:42,38:42:1503:38:1356:-98.2581,0,-111.481	0/1:109:60,49:60:2112:49:1710:-121.368,0,-157.535	1/1:91:0,91:0:0:91:3225:-290.464,-27.3937,0	1/1:87:1,86:1:36:86:3028:-269.149,-22.5913,0	1/1:73:0,73:0:0:73:2608:-234.968,-21.9752,0	1/1:72:0,72:0:0:72:2561:-230.739,-21.6742,0	0/1:59:26,33:26:927:33:1147:-85.5782,0,-65.9866	1/1:49:0,49:0:0:49:1730:-155.983,-14.7505,0	0/1:46:29,17:29:983:17:597:-40.1991,0,-74.9247	0/1:76:27,49:27:968:49:1752:-135.086,0,-64.5591	0/1:104:48,56:48:1666:56:1996:-148.607,0,-118.916	0/1:62:43,19:43:1523:19:676:-42.5041,0,-118.698	1/1:68:0,68:0:0:68:2404:-216.615,-20.47,0	1/1:62:1,61:1:36:61:2188:-193.587,-15.0656,0	0/1:32:15,17:15:527:17:600:-44.6758,0,-38.1272	1/1:207:0,207:0:0:207:7315:-658.393,-62.3132,0	1/1:104:0,104:0:0:104:3694:-332.662,-31.3071,0	0/1:43:16,27:16:563:27:955:-73.3206,0,-38.0549	0/1:118:54,64:54:1927:64:2290:-170.84,0,-138.185	0/1:70:41,29:41:1456:29:1036:-72.4818,0,-110.264	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:288:0,288:0:0:288:10101:-909.012,-86.6966,0	0/1:118:65,53:65:2288:53:1891:-134.946,0,-170.659	0/1:99:52,47:52:1790:47:1667:-120.515,0,-131.574	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:38:21,17:21:747:17:612:-43.9636,0,-56.1152	0/1:42:27,15:27:949:15:518:-34.3023,0,-73.0795	0/1:67:33,34:33:1157:34:1211:-89.1265,0,-84.2652	0/1:91:51,40:51:1771:40:1410:-99.802,0,-132.273	1/1:51:0,51:0:0:51:1801:-162.369,-15.3525,0	0/1:82:43,39:43:1517:39:1391:-100.804,0,-112.137	1/1:82:1,81:1:36:81:2871:-255.028,-21.0862,0	0/1:101:50,51:50:1762:51:1820:-133.677,0,-128.458	1/1:85:0,85:0:0:85:3031:-273.018,-25.5876,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:145:0,145:0:0:145:5149:-463.529,-43.6494,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:74:36,38:36:1288:38:1360:-100.424,0,-93.9474	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:77:0,77:0:0:77:2714:-244.501,-23.1793,0	0/1:36:14,22:14:496:22:784:-60.0468,0,-34.1372	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:3,2:3:99:2:72:-5.33157,0,-7.73143	0/1:48:27,21:27:944:21:737:-52.2012,0,-70.8219	0/1:150:81,68:81:2886:68:2426:-173.491,0,-214.871	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:134:62,72:62:2211:72:2548:-189.23,0,-158.916	1/1:50:0,50:0:0:50:1786:-161.022,-15.0515,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	0/1:78:35,43:35:1244:43:1531:-114.602,0,-88.7843	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:29:1,28:1:36:28:991:-85.9052,-5.1316,0	1/1:45:0,45:0:0:45:1595:-143.84,-13.5464,0	1/1:77:0,77:0:0:77:2733:-246.211,-23.1793,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:79:24,55:24:851:55:1936:-150.733,0,-53.1281	1/1:58:0,58:0:0:58:2061:-185.759,-17.4597,0	1/1:95:0,95:0:0:95:3382:-304.596,-28.5979,0	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	1/1:69:0,69:0:0:69:2443:-220.068,-20.7711,0	1/1:64:0,64:0:0:64:2274:-204.921,-19.2659,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:70:0,70:0:0:70:2495:-224.773,-21.0721,0	0/1:33:21,12:21:752:12:415:-27.7463,0,-58.0714	0/1:104:40,64:40:1408:64:2283:-174.424,0,-95.7101	1/1:107:0,107:0:0:107:3817:-343.727,-32.2102,0	1/1:72:0,72:0:0:72:2499:-225.16,-21.6742,0	0/1:97:55,42:55:1921:42:1499:-106.004,0,-143.965	0/1:176:82,94:82:2870:94:3315:-245.585,0,-205.554	1/1:65:3,62:3:108:62:2179:-186.298,-9.49178,0	0/1:94:49,45:49:1728:45:1572:-113.153,0,-127.505	0/1:97:47,50:47:1648:50:1765:-129.931,0,-119.405	0/1:69:31,38:31:1093:38:1332:-99.406,0,-77.9066	0/1:110:52,58:52:1821:58:2045:-151.205,0,-131.053	0/1:82:51,31:51:1762:31:1071:-72.0104,0,-134.148	1/1:63:0,63:0:0:63:2204:-198.621,-18.9649,0	1/1:131:0,131:0:0:131:4677:-421.09,-39.4349,0
chr10	2200944	.	G	A	22394.3	PASS	AB=0.444954;ABP=83.3349;AC=50;AF=0.265957;AN=188;AO=1365;CIGAR=1X;DP=5497;DPB=5497;DPRA=1.29927;EPP=2838.21;EPPR=8710.34;GTI=1;LEN=1;MEANALT=1;MQM=59.9883;MQMR=60;NS=94;NUMALT=1;ODDS=0.300676;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48834;QR=147375;RO=4129;RPL=15;RPP=2838.21;RPPR=8710.34;RPR=1350;RUN=1;SAF=1365;SAP=2967.07;SAR=0;SRF=4129;SRP=8969.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:8,7:8:284:7:244:-17.784,0,-21.3879	0/0:67:67,0:67:2372:0:0:0,-20.169,-213.736	0/1:47:21,26:21:752:26:921:-69.0568,0,-53.8578	0/1:118:84,34:84:2997:34:1224:-74.9455,0,-234.439	0/1:33:18,15:18:644:15:517:-36.9206,0,-48.3566	0/1:18:15,3:15:531:3:108:-4.65663,0,-42.7034	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2693	0/1:96:45,51:45:1593:51:1832:-136.262,0,-114.759	0/1:39:22,17:22:784:17:612:-43.6733,0,-59.1437	0/1:75:48,27:48:1724:27:964:-64.4996,0,-132.868	0/1:38:24,14:24:855:14:504:-34.259,0,-65.831	0/1:42:22,20:22:773:20:714:-51.9437,0,-57.2462	0/0:54:54,0:54:1917:0:0:0,-16.2556,-172.805	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:60:26,34:26:928:34:1224:-92.4052,0,-65.7765	0/0:54:54,0:54:1915:0:0:0,-16.2556,-172.627	0/1:29:15,14:15:536:14:504:-36.9682,0,-39.8449	0/1:205:126,79:126:4489:79:2832:-193.407,0,-342.466	0/1:93:56,37:56:1970:37:1308:-90.0257,0,-149.576	0/1:30:12,18:12:432:18:648:-49.621,0,-30.1903	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:65:57,8:57:2029:8:284:-6.3364,0,-163.314	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/0:140:136,4:136:4863:4:144:0,-28.8306,-424.51	0/0:82:81,0:81:2868:0:0:0,-24.3834,-257.997	0/1:31:18,13:18:636:13:468:-33.1277,0,-48.2361	0/1:111:67,44:67:2381:44:1561:-107.365,0,-181.132	0/1:104:59,45:59:2112:45:1611:-113.973,0,-159.042	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:157:157,0:157:5614:0:0:0,-47.2617,-505.381	0/1:129:87,42:87:3108:42:1500:-96.4617,0,-241.115	0/1:61:29,32:29:1035:32:1152:-85.6273,0,-75.1002	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:83:61,22:61:2192:22:772:-44.8137,0,-172.56	0/1:22:17,5:17:608:5:180:-9.9294,0,-48.4294	0/1:89:52,37:52:1868:37:1332:-93.3907,0,-141.608	0/1:71:28,43:28:1000:43:1544:-117.88,0,-68.9422	0/0:57:57,0:57:2013:0:0:0,-17.1587,-181.442	0/1:35:12,23:12:424:23:828:-64.3081,0,-27.9604	0/0:85:85,0:85:3033:0:0:0,-25.5875,-273.199	0/1:149:73,76:73:2612:76:2717:-199.863,0,-190.475	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/0:105:104,0:104:3721:0:0:0,-31.3071,-334.73	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/1:10:3,7:3:108:7:246:-19.4716,0,-7.06487	0/1:77:40,37:40:1432:37:1324:-96.2828,0,-105.998	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/0:54:54,0:54:1931:0:0:0,-16.2556,-174.066	0/1:22:18,4:18:644:4:144:-6.69096,0,-51.6679	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:6,6:6:201:6:212:-15.8124,0,-14.8047	0/1:24:8,16:8:269:16:568:-44.2271,0,-17.3114	0/1:85:43,42:43:1524:42:1508:-110.427,0,-111.866	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:135:74,61:74:2647:61:2161:-154.117,0,-197.837	0/0:169:168,1:168:5996:1:36:0,-47.2758,-536.147	0/0:62:61,1:61:2175:1:36:0,-15.0656,-192.418	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:67:44,23:44:1576:23:828:-54.6751,0,-121.963	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.585	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:109:109,0:109:3896:0:0:0,-32.8123,-350.835	0/0:16:15,0:15:540:0:0:0,-4.51545,-48.5767	0/0:87:87,0:87:3095:0:0:0,-26.1896,-278.778	0/0:15:15,0:15:523:0:0:0,-4.51545,-47.3985	0/0:78:77,1:77:2749:1:36:0,-19.8821,-244.052	0/1:53:28,25:28:1004:25:896:-65.0058,0,-74.7213	0/1:111:61,50:61:2153:50:1795:-128.418,0,-160.622	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:83:42,41:42:1500:41:1468:-107.431,0,-110.309	0/1:133:58,75:58:2084:75:2688:-202.127,0,-147.793	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:55:31,24:31:1099:24:864:-61.5259,0,-82.6628	0/1:50:28,22:28:1004:22:792:-56.5542,0,-75.6244	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/1:62:26,36:26:924:36:1291:-97.8298,0,-64.8138	0/1:64:24,40:24:864:40:1432:-109.911,0,-58.8166	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09
chr10	2208098	.	T	G	26452.5	PASS	AB=0.502488;ABP=3.18315;AC=52;AF=0.276596;AN=188;AO=1632;CIGAR=1X;DP=6049;DPB=6049;DPRA=1.06478;EPP=3538.17;EPPR=9331.25;GTI=1;LEN=1;MEANALT=1.01754;MQM=59.579;MQMR=59.7459;NS=94;NUMALT=1;ODDS=1.56068;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57622;QR=157107;RO=4415;RPL=1631;RPP=3538.17;RPPR=9331.25;RPR=1;RUN=1;SAF=1632;SAP=3546.85;SAR=0;SRF=4415;SRP=9590.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:14,20:14:489:20:688:-51.9237,0,-34.0957	0/0:76:76,0:76:2704:0:0:0,-22.8783,-243.603	0/1:117:45,71:45:1604:71:2517:-191.44,0,-109.371	0/1:180:86,94:86:3084:94:3328:-245.55,0,-223.552	0/1:33:10,23:10:360:23:815:-63.7322,0,-22.8103	0/1:13:6,7:6:207:7:248:-18.7425,0,-15.0535	0/1:59:42,17:42:1489:17:604:-36.9298,0,-116.54	0/1:82:49,33:49:1752:33:1133:-77.5716,0,-133.277	0/1:120:69,51:69:2471:51:1812:-127.209,0,-186.471	0/1:86:43,43:43:1521:43:1490:-108.366,0,-111.291	0/1:40:27,13:27:943:13:460:-29.6942,0,-73.1306	0/1:90:43,47:43:1544:47:1621:-118.997,0,-112.142	0/0:59:58,0:58:2076:0:0:0,-17.4597,-186.779	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.216	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.526	0/0:78:78,0:78:2773:0:0:0,-23.4803,-249.394	0/1:21:14,7:14:500:7:252:-16.7064,0,-39.0099	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2268	0/1:17:8,9:8:284:9:324:-24.3421,0,-20.7858	0/1:123:61,62:61:2171:62:2181:-159.437,0,-158.627	0/1:103:41,62:41:1468:62:2208:-167.963,0,-101.405	0/1:64:24,40:24:855:40:1436:-110.27,0,-57.9949	0/0:107:107,0:107:3811:0:0:0,-32.2102,-343.045	0/0:76:75,1:75:2647:1:36:0,-19.28,-234.868	0/1:33:11,22:11:392:22:769:-59.5789,0,-25.6778	0/0:142:139,3:139:4963:3:108:0,-32.6711,-436.736	0/0:98:98,0:98:3486:0:0:0,-29.5009,-313.95	0/1:36:26,10:26:936:10:356:-21.5155,0,-73.7162	0/1:170:71,99:71:2510:99:3483:-262.508,0,-174.967	0/1:76:45,31:45:1598:31:1089:-75.4326,0,-121.23	0/0:87:87,0:87:3080:0:0:0,-26.1896,-277.424	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:162:162,0:162:5750:0:0:0,-48.7669,-517.4	0/1:78:45,33:45:1612:33:1165:-81.6635,0,-121.89	0/1:32:14,18:14:491:18:631:-47.4781,0,-34.882	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.9632	0/1:63:39,24:39:1400:24:852:-58.0273,0,-107.107	0/1:23:8,15:8:280:15:536:-41.6511,0,-18.6156	0/1:85:48,37:48:1719:37:1295:-91.2503,0,-129.403	0/1:40:19,21:19:672:21:756:-56.3122,0,-48.7656	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.196	0/1:67:38,29:38:1364:29:1032:-73.0227,0,-102.891	0/0:77:77,0:77:2735:0:0:0,-23.1793,-246.391	0/1:107:53,54:53:1883:54:1912:-140.108,0,-137.535	0/0:73:73,0:73:2589:0:0:0,-21.9752,-233.252	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.218	0/0:98:98,0:98:3499:0:0:0,-29.5009,-315.119	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:96:59,37:59:2108:37:1328:-90.9152,0,-161.066	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.087	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:97:97,0:97:3459:0:0:0,-29.1999,-311.509	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6083	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:3,5:3:108:5:169:-13.1326,0,-7.66693	0/1:53:27,26:27:964:26:920:-67.1625,0,-71.1176	0/1:68:39,29:39:1383:29:1039:-73.3378,0,-104.297	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:135:65,70:65:2324:70:2480:-182.813,0,-168.288	0/0:81:81,0:81:2854:0:0:0,-24.3834,-257.052	0/0:41:40,1:40:1414:1:27:0,-9.64245,-124.855	0/0:47:47,0:47:1662:0:0:0,-14.1484,-149.866	0/1:156:61,95:61:2176:95:3349:-254.654,0,-149.143	0/0:124:120,4:120:4283:4:144:0,-24.0141,-372.331	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1163	0/0:84:84,0:84:2946:0:0:0,-25.2865,-265.374	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3602	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:77:30,47:30:1061:47:1653:-125.859,0,-72.6201	0/0:80:80,0:80:2840:0:0:0,-24.0824,-255.829	0/0:157:157,0:157:5596:0:0:0,-47.2617,-503.543	0/0:122:122,0:122:4322:0:0:0,-36.7257,-389.107	0/0:37:35,2:35:1248:2:72:0,-4.30139,-105.781	0/0:48:46,2:46:1618:2:72:0,-7.61272,-139.068	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:72:71,1:71:2522:1:36:0,-18.0759,-223.633	0/1:67:41,26:41:1468:26:904:-61.4891,0,-112.158	0/1:105:56,49:56:2004:49:1743:-125.543,0,-149.024	0/0:55:55,0:55:1932:0:0:0,-16.5566,-174.125	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.994	0/1:28:17,11:17:604:11:396:-27.5521,0,-46.2575	0/1:101:50,51:50:1780:51:1805:-132.298,0,-130.077	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.48	0/1:61:34,27:34:1224:27:928:-65.4131,0,-92.095	0/1:51:23,28:23:804:28:991:-74.1401,0,-57.324	0/1:25:14,11:14:496:11:392:-28.0943,0,-37.4439	0/1:75:31,44:31:1103:44:1550:-117.194,0,-77.0018	0/1:58:21,37:21:756:37:1299:-99.6937,0,-50.9075	0/0:103:103,0:103:3669:0:0:0,-31.0061,-330.375	0/0:91:91,0:91:3251:0:0:0,-27.3937,-291.944
chr10	2208102	.	C	A	89862.8	PASS	AB=0.489662;ABP=5.97363;AC=136;AF=0.723404;AN=188;AO=4296;CIGAR=1X;DP=5945;DPB=5945;DPRA=64.5978;EPP=9072.9;EPPR=3559.89;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.7412;MQMR=59.5767;NS=94;NUMALT=1;ODDS=0.538077;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153057;QR=58131;RO=1642;RPL=4266;RPP=9072.9;RPPR=3559.89;RPR=30;RUN=1;SAF=4296;SAP=9331.66;SAR=0;SRF=1642;SRP=3568.57;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:20,11:20:711:11:392:-26.2799,0,-54.8977	1/1:74:0,74:0:0:74:2582:-232.625,-22.2762,0	0/1:117:71,46:71:2518:46:1644:-113.028,0,-191.615	0/1:182:98,84:98:3467:84:3000:-215.395,0,-257.434	0/1:33:23,10:23:805:10:360:-22.8103,0,-62.8289	0/1:13:7,6:7:248:6:212:-15.5114,0,-18.7425	0/1:59:18,41:18:639:41:1460:-113.934,0,-40.0775	0/1:77:30,47:30:1063:47:1675:-127.855,0,-72.7878	0/1:115:48,67:48:1716:67:2392:-180.87,0,-120.081	0/1:83:42,41:42:1482:41:1476:-108.15,0,-108.553	0/1:40:14,26:14:500:26:926:-71.6054,0,-33.2916	0/1:88:46,42:46:1635:42:1500:-108.784,0,-120.88	1/1:61:0,61:0:0:61:2149:-193.647,-18.3628,0	1/1:71:0,71:0:0:71:2527:-227.66,-21.3731,0	1/1:51:0,51:0:0:51:1832:-165.128,-15.3525,0	1/1:72:0,72:0:0:72:2558:-230.284,-21.6742,0	0/1:21:7,14:7:252:14:489:-38.0126,0,-16.7064	1/1:20:0,20:0:0:20:712:-64.3928,-6.0206,0	0/1:17:9,8:9:320:8:279:-20.33,0,-23.9786	0/1:123:63,60:63:2239:60:2152:-156.918,0,-164.654	0/1:102:63,38:63:2238:38:1348:-90.8547,0,-170.904	0/1:63:39,24:39:1400:24:833:-56.2626,0,-107.332	1/1:101:0,101:0:0:101:3570:-321.407,-30.404,0	1/1:76:1,73:1:36:73:2620:-232.435,-19.0378,0	0/1:30:21,9:21:735:9:324:-20.4667,0,-57.4335	1/1:138:3,135:3:108:135:4798:-421.889,-31.467,0	1/1:91:0,91:0:0:91:3257:-293.344,-27.3937,0	0/1:35:10,25:10:360:25:900:-70.7788,0,-22.1796	0/1:172:102,70:102:3619:70:2512:-174.549,0,-274.137	0/1:78:32,46:32:1124:46:1633:-123.776,0,-77.9784	1/1:89:0,89:0:0:89:3152:-283.902,-26.7917,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:158:0,158:0:0:158:5640:-507.579,-47.5627,0	0/1:78:33,45:33:1152:45:1607:-121.439,0,-80.3732	0/1:30:18,12:18:635:12:428:-29.8217,0,-48.4351	0/1:6:4,2:4:144:2:72:-5.0257,0,-11.5074	0/1:60:22,38:22:792:38:1364:-104.771,0,-53.5439	0/1:23:16,7:16:572:7:252:-16.1053,0,-44.8897	0/1:89:38,50:38:1355:50:1776:-133.265,0,-95.3895	0/1:37:20,17:20:697:17:600:-43.1911,0,-51.8988	1/1:47:1,46:1:36:46:1628:-143.198,-10.5501,0	0/1:70:30,40:30:1045:40:1412:-106.304,0,-73.2844	1/1:75:0,75:0:0:75:2666:-240.185,-22.5773,0	0/1:104:54,50:54:1875:50:1787:-129.805,0,-137.704	1/1:74:0,74:0:0:74:2631:-237.031,-22.2762,0	1/1:54:0,54:0:0:54:1932:-174.151,-16.2556,0	1/1:94:0,94:0:0:94:3348:-301.533,-28.2968,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:96:37,59:37:1332:59:2116:-161.785,0,-91.2616	1/1:51:0,51:0:0:51:1808:-162.999,-15.3525,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:97:0,97:0:0:97:3476:-313.036,-29.1999,0	0/1:38:20,18:20:716:18:636:-46.128,0,-53.3286	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:8:5,3:5:172:3:108:-7.66693,0,-13.4014	0/1:50:28,22:28:967:22:784:-55.8324,0,-72.2863	0/1:72:30,42:30:1072:42:1495:-113.153,0,-75.1013	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:136:72,64:72:2536:64:2296:-165.468,0,-187.547	1/1:74:0,74:0:0:74:2643:-238.071,-22.2762,0	1/1:41:1,40:1:36:40:1424:-124.856,-8.74396,0	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:154:94,60:94:3313:60:2132:-145.787,0,-252.003	1/1:119:4,115:4:140:115:4115:-357.586,-22.878,0	1/1:24:0,24:0:0:24:851:-76.9033,-7.22472,0	1/1:80:0,80:0:0:80:2842:-256.015,-24.0824,0	1/1:22:0,22:0:0:22:783:-70.792,-6.62266,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:83:52,31:52:1841:31:1108:-75.0455,0,-140.965	1/1:78:0,78:0:0:78:2791:-251.422,-23.4803,0	1/1:156:0,156:0:0:156:5557:-500.035,-46.9607,0	1/1:120:0,120:0:0:120:4292:-386.409,-36.1236,0	1/1:34:2,32:2:72:32:1124:-94.6279,-3.3983,0	1/1:46:2,44:2:72:44:1558:-133.673,-7.01066,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:71:1,70:1:27:70:2516:-223.992,-18.6733,0	0/1:65:26,39:26:913:39:1381:-104.925,0,-62.9033	0/1:105:49,55:49:1742:55:1959:-144.917,0,-125.394	1/1:54:0,54:0:0:54:1936:-174.486,-16.2556,0	1/1:55:0,55:0:0:55:1945:-175.321,-16.5567,0	0/1:25:11,14:11:388:14:476:-35.628,0,-27.7303	0/1:103:53,49:53:1878:49:1760:-127.656,0,-138.253	1/1:11:0,11:0:0:11:383:-34.7868,-3.31133,0	0/1:58:25,33:25:878:33:1184:-89.3994,0,-61.819	0/1:53:29,24:29:1032:24:860:-61.7672,0,-77.2285	0/1:25:11,14:11:396:14:496:-37.4467,0,-28.457	0/1:77:45,32:45:1591:32:1148:-80.448,0,-120.273	0/1:57:37,20:37:1319:20:712:-47.2479,0,-101.795	1/1:100:0,100:0:0:100:3572:-321.651,-30.103,0	1/1:87:0,86:0:0:86:3063:-274.714,-25.8886,0
chr10	2209219	.	G	A	100325	PASS	AB=0.486119;ABP=9.15946;AC=133;AF=0.722826;AN=184;AO=4821;CIGAR=1X;DP=6726;DPB=6726;DPRA=10.5479;EPP=10376.4;EPPR=4102.82;GTI=1;LEN=1;MEANALT=1.01099;MQM=59.9832;MQMR=59.9685;NS=92;NUMALT=1;ODDS=3.27151;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172235;QR=68088;RO=1904;RPL=11;RPP=10376.4;RPPR=4102.82;RPR=4810;RUN=1;SAF=4821;SAP=10471.7;SAR=0;SRF=1904;SRP=4137.49;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:36,31:36:1292:31:1112:-80.2223,0,-96.4148	1/1:32:1,31:1:36:31:1101:-95.8009,-6.03469,0	0/1:79:39,40:39:1383:40:1436:-105.756,0,-100.987	0/1:153:81,72:81:2899:72:2574:-185.852,0,-215.088	0/1:34:16,18:16:576:18:627:-46.5187,0,-41.94	0/1:33:15,18:15:540:18:644:-48.3566,0,-39.0025	0/1:75:34,41:34:1216:41:1464:-109.479,0,-87.1693	0/1:73:43,30:43:1544:30:1072:-74.8173,0,-117.278	0/1:81:36,45:36:1287:45:1608:-120.626,0,-91.3209	0/1:57:26,31:26:928:31:1104:-82.5119,0,-66.6795	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	0/1:119:52,67:52:1855:67:2396:-180.075,0,-131.406	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	0/1:30:14,16:14:504:16:572:-42.7825,0,-36.6672	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:24:6,18:6:216:18:644:-51.0659,0,-12.5658	0/1:92:48,44:48:1720:44:1584:-115.157,0,-127.391	0/1:92:41,51:41:1468:51:1832:-137.458,0,-104.721	0/1:130:110,20:110:3948:20:720:-25.9949,0,-316.377	1/1:84:0,84:0:0:84:3000:-270.232,-25.2865,0	0/1:53:10,43:10:356:43:1544:-123.298,0,-16.4267	0/1:77:56,21:56:1993:21:756:-45.1879,0,-156.463	1/1:175:0,174:0:0:174:6220:-559.555,-52.3792,0	1/1:215:0,215:0:0:215:7665:-689.884,-64.7215,0	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/1:192:81,111:81:2881:111:3952:-298.004,0,-201.728	0/1:110:55,55:55:1976:55:1944:-142.12,0,-145.001	1/1:55:0,55:0:0:55:1949:-175.684,-16.5567,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:194:0,194:0:0:194:6936:-624.307,-58.3998,0	0/1:97:49,48:49:1748:48:1720:-125.886,0,-128.404	0/1:63:23,40:23:824:40:1417:-108.86,0,-55.5184	.:.:.:.:.:.:.:.	0/1:98:70,28:70:2495:28:996:-60.4539,0,-195.302	0/1:26:7,19:7:252:19:680:-53.7024,0,-15.2022	0/1:133:94,39:94:3353:39:1400:-86.2622,0,-261.949	0/1:47:25,22:25:888:22:784:-56.7355,0,-66.0906	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:83:57,26:57:2019:26:932:-59.2134,0,-156.997	1/1:98:0,98:0:0:98:3497:-314.94,-29.5009,0	0/1:110:56,54:56:2012:54:1927:-140.593,0,-148.012	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	1/1:112:0,112:0:0:112:4000:-360.169,-33.7154,0	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:109:63,46:63:2264:46:1641:-115.164,0,-171.21	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/0:7:7,0:7:240:0:0:0,-2.10721,-21.9347	1/1:131:0,131:0:0:131:4680:-421.362,-39.4349,0	0/1:30:20,10:20:720:10:356:-23.3503,0,-56.0979	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:20:12,8:12:432:8:273:-18.8796,0,-33.2006	0/1:89:51,38:51:1832:38:1345:-94.5565,0,-138.369	0/1:105:53,52:53:1904:52:1860:-136.071,0,-140.03	.:.:.:.:.:.:.:.	0/1:119:33,86:33:1184:86:3071:-240.569,0,-71.0457	1/1:140:2,138:2:72:138:4920:-436.115,-35.3075,0	1/1:68:0,68:0:0:68:2409:-217.066,-20.47,0	1/1:51:0,51:0:0:51:1818:-163.901,-15.3525,0	0/1:97:39,58:39:1396:58:2061:-156.56,0,-96.7392	1/1:115:2,113:2:72:113:4044:-357.31,-27.7817,0	1/1:37:1,36:1:36:36:1292:-112.985,-7.53984,0	1/1:30:1,29:1:32:29:1040:-90.715,-5.83159,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:134:67,67:67:2400:67:2392:-175.199,0,-175.918	1/1:79:1,78:1:36:78:2780:-246.843,-20.1831,0	1/1:104:0,104:0:0:104:3719:-334.911,-31.3071,0	1/1:132:0,132:0:0:132:4692:-422.444,-39.736,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:52:1,51:1:36:51:1813:-159.851,-12.0553,0	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	1/1:94:0,94:0:0:94:3360:-302.617,-28.2968,0	0/1:68:35,33:35:1231:33:1184:-86.3983,0,-90.6232	0/1:144:69,75:69:2465:75:2673:-197.466,0,-178.754	1/1:63:0,63:0:0:63:2255:-203.208,-18.9649,0	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	0/1:33:15,18:15:540:18:644:-48.3566,0,-39.0025	0/1:113:61,52:61:2192:52:1864:-134.023,0,-163.529	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:61:29,32:29:1036:32:1144:-84.9067,0,-75.1911	0/1:54:33,21:33:1188:21:752:-51.7506,0,-90.973	0/1:49:21,28:21:748:28:1008:-76.2859,0,-52.8948	0/1:112:55,57:55:1959:57:2048:-150.876,0,-142.869	0/1:35:15,20:15:536:20:720:-54.5927,0,-38.0388	1/1:103:0,103:0:0:103:3678:-331.223,-31.0061,0	1/1:72:0,72:0:0:72:2570:-231.549,-21.6742,0
chr10	2209256	.	A	T	32088.5	PASS	AB=0.520623;ABP=16.5344;AC=51;AF=0.277174;AN=184;AO=1920;CIGAR=1X;DP=6649;DPB=6649;DPRA=1.02298;EPP=4172.24;EPPR=10265.4;GTI=1;LEN=1;MEANALT=1.05263;MQM=59.9969;MQMR=59.9877;NS=92;NUMALT=1;ODDS=2.24305;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68085;QR=168806;RO=4726;RPL=1920;RPP=4172.24;RPPR=10265.4;RPR=0;RUN=1;SAF=1920;SAP=4172.24;SAR=0;SRF=4726;SRP=10265.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:30,37:30:1068:37:1301:-97.22,0,-76.2631	0/0:33:32,1:32:1152:1:36:0,-6.33571,-100.391	0/1:79:40,39:40:1432:39:1387:-101.347,0,-105.396	0/1:151:71,80:71:2540:80:2846:-210.92,0,-183.396	0/1:32:16,16:16:572:16:561:-41.1842,0,-42.1805	0/1:34:17,17:17:596:17:602:-44.2739,0,-43.7328	0/1:75:42,33:42:1504:33:1188:-84.6513,0,-113.077	0/1:71:27,44:27:960:44:1571:-120.308,0,-65.3431	0/1:79:44,35:44:1563:35:1247:-88.7527,0,-117.18	0/1:57:31,26:31:1091:26:932:-67.0402,0,-81.34	0/1:33:18,15:18:648:15:532:-38.2791,0,-48.7179	0/1:121:66,55:66:2364:55:1942:-138.629,0,-176.594	0/0:76:76,0:76:2690:0:0:0,-22.8783,-242.345	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.04	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:30:16,14:16:567:14:492:-35.5814,0,-42.3298	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:22:16,6:16:572:6:216:-13.1679,0,-45.1908	0/1:94:44,50:44:1563:50:1796:-133.626,0,-112.664	0/1:93:50,43:50:1787:43:1517:-108.825,0,-133.116	0/1:129:18,111:18:640:111:3963:-318.029,0,-19.0964	0/0:83:83,0:83:2959:0:0:0,-24.9855,-266.544	0/1:52:43,9:43:1544:9:312:-12.7618,0,-123.6	0/1:75:19,56:19:680:56:2001:-157.785,0,-38.9519	0/0:172:172,0:172:6168:0:0:0,-51.7772,-555.217	0/0:210:210,0:210:7484:0:0:0,-63.2163,-673.605	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/1:192:107,85:107:3822:85:2990:-211.533,0,-286.379	0/1:111:54,57:54:1920:57:2044:-150.817,0,-139.663	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:195:195,0:195:6999:0:0:0,-58.7008,-629.97	0/1:94:45,48:45:1612:48:1692:-124.208,0,-117.014	0/1:64:41,23:41:1463:23:790:-52.1466,0,-112.699	.:.:.:.:.:.:.:.	0/1:100:29,71:29:1040:71:2498:-194.97,0,-63.8114	0/1:25:18,7:18:648:7:244:-14.7737,0,-51.1261	0/1:135:39,96:39:1392:96:3378:-263.598,0,-84.94	0/1:43:21,22:21:739:22:772:-56.857,0,-53.8881	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/1:82:24,58:24:860:58:2033:-158.556,0,-53.0374	0/0:92:92,0:92:3287:0:0:0,-27.6948,-296.049	0/1:106:51,55:51:1820:55:1932:-142.242,0,-132.172	0/0:66:66,0:66:2345:0:0:0,-19.868,-211.308	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/0:110:110,0:110:3903:0:0:0,-33.1133,-351.448	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:108:45,63:45:1603:63:2256:-170.792,0,-112.048	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:130:130,0:130:4631:0:0:0,-39.1339,-416.955	0/1:29:10,19:10:360:19:676:-52.4381,0,-24.0144	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:21:9,12:9:320:12:428:-32.5372,0,-22.8207	0/1:86:38,48:38:1356:48:1710:-128.297,0,-96.4519	0/1:103:51,52:51:1821:52:1851:-135.863,0,-133.162	.:.:.:.:.:.:.:.	0/1:121:86,35:86:3057:35:1256:-76.9207,0,-238.707	0/0:137:135,2:135:4839:2:72:0,-34.4044,-428.826	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:99:59,40:59:2112:40:1424:-98.6555,0,-160.547	0/0:113:111,2:111:3959:2:72:0,-27.1797,-349.665	0/0:37:36,1:36:1296:1:36:0,-7.53983,-113.346	0/0:28:27,1:27:968:1:36:0,-4.83056,-83.8391	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/1:133:66,67:66:2360:67:2362:-172.799,0,-172.622	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.726	0/0:99:99,0:99:3536:0:0:0,-29.802,-318.45	0/0:128:128,0:128:4570:0:0:0,-38.5318,-411.466	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.16	0/0:48:47,1:47:1675:1:36:0,-10.8512,-147.438	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:93:92,1:92:3292:1:36:0,-24.3975,-292.901	0/1:65:31,34:31:1112:34:1216:-90.1796,0,-80.8244	0/1:143:73,70:73:2615:70:2457:-178.335,0,-192.55	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.703	0/0:59:59,0:59:2089:0:0:0,-17.7608,-188.278	0/1:33:18,15:18:644:15:540:-39.0025,0,-48.3566	0/1:117:54,62:54:1927:62:2208:-163.706,0,-138.427	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:63:32,30:32:1140:30:1057:-76.4541,0,-83.9243	0/1:55:21,34:21:752:34:1199:-91.6581,0,-51.4496	0/1:49:26,23:26:932:23:820:-59.372,0,-69.4484	0/1:113:57,56:57:2048:56:1984:-144.817,0,-150.575	0/1:36:20,16:20:720:16:570:-40.7957,0,-54.2917	0/0:101:101,0:101:3611:0:0:0,-30.404,-325.196	0/0:69:69,0:69:2454:0:0:0,-20.7711,-221.114
chr10	2301694	.	T	C	99204.9	PASS	AB=0.403598;ABP=353.018;AC=135;AF=0.725806;AN=186;AO=4907;CIGAR=1X;DP=7515;DPB=7515;DPRA=20.4103;EPP=10658.4;EPPR=5657.52;GTI=7;LEN=1;MEANALT=1.04348;MQM=57.5193;MQMR=59.9343;NS=93;NUMALT=1;ODDS=1.53587;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175627;QR=93124;RO=2604;RPL=0;RPP=10658.4;RPPR=5657.52;RPR=4907;RUN=1;SAF=4907;SAP=10658.4;SAR=0;SRF=2604;SRP=5657.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:12,2:12:432:2:72:-2.61737,0,-35.0068	1/1:198:0,197:0:0:197:7040:-630.954,-59.3029,0	0/1:108:85,23:85:3048:23:820:-41.4407,0,-242.038	0/1:224:137,86:137:4901:86:3088:-210.465,0,-373.681	0/1:54:25,29:25:896:29:1040:-77.6257,0,-64.7047	0/1:42:21,21:21:752:21:753:-55.2764,0,-55.363	0/1:132:67,65:67:2389:65:2328:-168.541,0,-175.494	0/1:137:77,60:77:2745:60:2144:-151.203,0,-206.049	0/1:77:37,40:37:1324:40:1436:-105.549,0,-96.2828	0/1:124:75,49:75:2680:49:1764:-121.495,0,-204.118	0/1:33:20,13:20:720:13:468:-32.4527,0,-55.1948	0/1:62:31,31:31:1116:31:1094:-79.8089,0,-82.0878	1/1:58:0,58:0:0:58:2084:-186.899,-17.4597,0	1/1:48:0,48:0:0:48:1720:-154.817,-14.4494,0	1/1:47:0,47:0:0:47:1683:-151.588,-14.1484,0	1/1:40:0,40:0:0:40:1431:-128.946,-12.0412,0	0/1:56:28,28:28:1008:28:1008:-73.9411,0,-74.1787	1/1:42:2,40:2:72:40:1440:-122.963,-5.80654,0	0/1:27:11,16:11:396:16:567:-43.1013,0,-27.8549	0/1:149:104,45:104:3697:45:1616:-100.802,0,-288.079	0/1:118:71,47:71:2525:47:1688:-116.416,0,-191.979	0/1:163:125,38:125:4431:38:1360:-72.3297,0,-349.748	1/1:53:1,52:1:32:52:1860:-164.32,-12.7553,0	1/1:128:7,121:7:252:121:4340:-367.248,-15.5029,0	0/1:75:42,33:42:1512:33:1176:-83.5263,0,-113.797	1/1:290:4,286:4:144:286:10248:-908.431,-73.9851,0	1/1:91:0,91:0:0:91:3256:-293.1,-27.3937,0	0/1:32:18,14:18:648:14:500:-35.689,0,-49.0189	0/1:227:129,97:129:4612:97:3468:-243.841,0,-346.852	0/1:146:79,67:79:2824:67:2412:-171.942,0,-210.449	1/1:152:0,152:0:0:152:5459:-490.153,-45.7566,0	1/1:7:0,7:0:0:7:237:-21.6505,-2.10721,0	0/1:3:2,1:2:72:1:36:-2.69418,0,-5.93363	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0679,-0.90309,0	1/1:166:0,166:0:0:166:5943:-534.752,-49.971,0	0/1:249:135,114:135:4836:114:4084:-291.467,0,-360.438	0/1:43:17,26:17:612:26:936:-71.5497,0,-42.4691	0/1:4:2,2:2:72:2:72:-5.63069,0,-5.6326	0/1:159:99,60:99:3544:60:2156:-146.224,0,-271.304	0/1:19:8,11:8:288:11:396:-30.248,0,-20.5478	0/1:151:95,56:95:3396:56:2000:-134.543,0,-260.4	0/1:45:17,28:17:612:28:1000:-76.1794,0,-41.8671	1/1:43:0,43:0:0:43:1540:-138.742,-12.9443,0	0/1:99:61,38:61:2196:38:1356:-92.4249,0,-168.102	1/1:110:0,110:0:0:110:3923:-352.829,-33.1133,0	0/1:134:69,65:69:2476:65:2324:-168.849,0,-182.755	1/1:41:0,41:0:0:41:1464:-131.983,-12.3422,0	1/1:86:0,85:0:0:85:3040:-273.465,-25.5876,0	1/1:135:0,135:0:0:135:4826:-434.408,-40.6391,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:104:65,39:65:2328:39:1392:-93.8588,0,-178.473	1/1:45:0,45:0:0:45:1616:-145.642,-13.5464,0	0/1:8:5,3:5:180:3:108:-7.65966,0,-14.1438	1/1:144:0,144:0:0:144:5155:-463.372,-43.3483,0	0/1:34:13,21:13:456:21:752:-57.7284,0,-31.1382	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:11:9,2:9:324:2:72:-3.52055,0,-26.1945	0/1:63:30,33:30:1080:33:1184:-87.244,0,-78.5199	0/1:81:37,44:37:1332:44:1563:-116.429,0,-95.7908	1/1:6:0,6:0:0:6:216:-19.7896,-1.80618,0	0/1:191:108,83:108:3857:83:2972:-209.33,0,-289.816	1/1:166:0,166:0:0:166:5944:-533.925,-49.971,0	1/1:49:0,49:0:0:49:1752:-157.725,-14.7505,0	1/1:68:0,68:0:0:68:2436:-219.376,-20.47,0	0/1:219:159,60:159:5670:60:2152:-127.914,0,-443.438	1/1:88:0,88:0:0:88:3148:-283.198,-26.4906,0	1/1:10:0,10:0:0:10:360:-32.7308,-3.0103,0	1/1:57:0,57:0:0:57:2048:-184.441,-17.1587,0	1/1:56:0,56:0:0:56:1995:-179.262,-16.8577,0	1/1:7:0,7:0:0:7:248:-22.6614,-2.10721,0	0/1:79:59,20:59:2109:20:720:-41.2163,0,-166.296	1/1:46:0,46:0:0:46:1636:-147.199,-13.8474,0	1/1:106:0,106:0:0:106:3800:-341.524,-31.9092,0	1/1:62:0,62:0:0:62:2216:-199.608,-18.6639,0	1/1:94:0,94:0:0:94:3360:-301.933,-28.2968,0	1/1:81:2,79:2:72:79:2832:-247.42,-17.5467,0	1/1:3:0,3:0:0:3:108:-10.0679,-0.90309,0	1/1:96:0,96:0:0:96:3416:-306.657,-28.8989,0	0/1:111:86,25:86:3064:25:896:-47.4002,0,-242.547	0/1:172:116,56:116:4149:56:1993:-127.787,0,-321.815	1/1:85:0,85:0:0:85:3030:-272.309,-25.5876,0	1/1:41:0,41:0:0:41:1468:-131.162,-12.3422,0	0/1:58:30,28:30:1071:28:1000:-72.8459,0,-79.2419	0/1:83:46,37:46:1648:37:1332:-95.196,0,-123.623	1/1:30:0,30:0:0:30:1076:-96.9999,-9.0309,0	0/1:66:33,33:33:1188:33:1184:-86.9235,0,-87.3606	0/1:51:29,22:29:1044:22:784:-55.4807,0,-78.9199	0/1:15:6,9:6:212:9:320:-24.596,0,-14.9093	0/1:32:16,16:16:576:16:568:-41.6119,0,-42.542	0/1:45:35,10:35:1252:10:359:-19.0765,0,-99.4387	1/1:33:0,33:0:0:33:1180:-106.491,-9.93399,0	1/1:62:0,62:0:0:62:2216:-199.66,-18.6639,0
chr10	2310425	.	C	T	38335.2	PASS	AB=0.465814;ABP=53.7868;AC=51;AF=0.271277;AN=188;AO=2350;CIGAR=1X;DP=9423;DPB=9423;DPRA=1.16406;EPP=5105.97;EPPR=15353.1;GTI=2;LEN=1;MEANALT=1.05085;MQM=59.9421;MQMR=59.9873;NS=94;NUMALT=1;ODDS=7.56524;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84022;QR=252488;RO=7069;RPL=2350;RPP=5105.97;RPPR=15353.1;RPR=0;RUN=1;SAF=0;SAP=5105.97;SAR=2350;SRF=0;SRP=15353.1;SRR=7069;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:38,19:38:1353:19:669:-43.3752,0,-104.91	0/0:170:168,1:168:6001:1:36:0,-47.6356,-536.597	0/1:148:72,76:72:2553:76:2736:-201.921,0,-185.467	0/1:162:84,78:84:2963:78:2783:-201.942,0,-218.134	0/1:99:61,38:61:2184:38:1341:-91.1861,0,-167.024	0/1:125:88,37:88:3145:37:1317:-81.2011,0,-245.637	0/1:98:64,34:64:2273:34:1220:-80.6059,0,-175.33	0/1:142:71,71:71:2514:71:2526:-184.842,0,-183.763	0/1:155:107,47:107:3795:47:1688:-105.489,0,-295.027	0/1:141:90,51:90:3202:51:1832:-122.715,0,-245.956	0/1:29:16,13:16:563:13:453:-32.3697,0,-42.2693	0/1:36:12,24:12:432:24:864:-67.2455,0,-28.3841	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:34:13,21:13:468:21:751:-57.6783,0,-32.2246	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:25:14,11:14:504:11:392:-28.0943,0,-38.1723	0/1:172:103,69:103:3677:69:2472:-170.957,0,-279.355	0/1:125:72,53:72:2569:53:1900:-133.649,0,-193.829	0/1:169:61,108:61:2165:108:3861:-296.81,0,-144.241	0/0:179:178,1:178:6373:1:32:0,-50.6851,-570.458	0/0:176:173,3:173:6170:3:108:0,-42.9109,-545.327	0/1:94:48,46:48:1708:46:1607:-116.612,0,-125.709	0/0:489:489,0:489:17449:0:0:0,-147.204,-1570.03	0/0:215:215,0:215:7678:0:0:0,-64.7214,-691.054	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:247:116,131:116:4152:131:4708:-349.523,0,-299.509	0/1:166:95,71:95:3404:71:2548:-179.591,0,-256.603	0/0:124:123,0:123:4416:0:0:0,-37.0267,-397.251	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.088	0/1:211:121,90:121:4333:90:3198:-224.519,0,-326.626	0/1:31:14,17:14:504:17:608:-45.7201,0,-36.3662	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:211:111,100:111:3969:100:3577:-258.571,0,-293.565	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:177:85,92:85:3052:92:3308:-244.654,0,-221.626	0/1:36:26,10:26:932:10:360:-21.9072,0,-73.3618	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:79:43,36:43:1506:36:1296:-93.1626,0,-111.962	0/0:153:152,1:152:5429:1:36:0,-42.4593,-485.141	0/1:223:122,101:122:4376:101:3566:-254.006,0,-326.883	0/0:168:168,0:168:5992:0:0:0,-50.573,-539.384	0/0:103:103,0:103:3654:0:0:0,-31.0061,-329.063	0/0:209:209,0:209:7414:0:0:0,-62.9153,-667.304	0/1:10:2,8:2:72:8:273:-21.8899,0,-3.82642	0/1:260:126,133:126:4520:133:4776:-351.669,0,-328.64	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/1:28:16,12:16:576:12:423:-29.9463,0,-43.7461	0/0:142:141,1:141:5038:1:36:0,-39.148,-449.965	0/1:46:23,23:23:824:23:824:-60.6359,0,-60.6359	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/1:98:51,47:51:1817:47:1684:-122.346,0,-134.308	0/1:61:27,34:27:968:34:1220:-91.744,0,-69.0745	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:244:128,116:128:4581:116:4168:-301.85,0,-339.002	0/0:256:256,0:256:9192:0:0:0,-77.0637,-827.247	0/0:95:95,0:95:3374:0:0:0,-28.5978,-303.874	0/0:98:98,0:98:3490:0:0:0,-29.5009,-314.309	0/1:167:101,66:101:3601:66:2370:-163.286,0,-274.019	0/0:171:168,3:168:6017:3:108:0,-41.401,-531.557	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:157:68,89:68:2440:89:3180:-239.155,0,-172.593	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:148:148,0:148:5274:0:0:0,-44.5524,-474.795	0/0:200:200,0:200:7184:0:0:0,-60.206,-646.612	0/0:160:160,0:160:5691:0:0:0,-48.1648,-512.307	0/0:115:110,5:110:3933:5:180:0,-18.0664,-337.609	0/0:17:16,1:16:576:1:36:0,-1.51923,-48.5767	0/0:114:113,1:113:4011:1:36:0,-30.7191,-357.578	0/1:128:66,62:66:2338:62:2202:-159.91,0,-172.147	0/1:256:127,129:127:4564:129:4601:-337.191,0,-333.86	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.285	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:36:26,10:26:924:10:360:-21.9072,0,-72.6406	0/1:55:31,24:31:1104:24:864:-61.5259,0,-83.114	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:44:20,24:20:705:24:864:-64.8372,0,-50.5275	0/1:28:17,11:17:608:11:388:-26.8285,0,-46.6232	0/1:22:11,11:11:392:11:396:-29.3519,0,-28.9974	0/1:41:20,21:20:716:21:756:-56.025,0,-52.4255	0/1:42:14,28:14:504:28:1008:-78.3931,0,-33.0548	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474
chr10	2365661	.	A	G	47565.8	PASS	AB=0.344978;ABP=2106.25;AC=86;AF=0.457447;AN=188;AO=3481;CIGAR=1X;DP=10195;DPB=10195;DPRA=14.8339;EPP=7561.91;EPPR=3618.03;GTI=8;LEN=1;MEANALT=1.01149;MQM=59.9457;MQMR=34.494;NS=94;NUMALT=1;ODDS=0.568122;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123384;QR=240322;RO=6713;RPL=3481;RPP=7561.91;RPPR=14476.1;RPR=0;RUN=1;SAF=3481;SAP=7561.91;SAR=0;SRF=1673;SRP=3670.12;SRR=5040;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:44,25:44:1584:25:900:-60.5499,0,-93.4541	0/1:123:65,58:65:2332:58:2080:-149.56,0,-123.675	0/1:110:68,42:68:2424:42:1479:-100.29,0,-146.681	0/1:206:164,42:164:5888:42:1500:-73.2824,0,-370.035	0/1:42:25,17:25:896:17:593:-41.0515,0,-54.8061	0/1:43:21,22:21:756:22:780:-57.5787,0,-52.3031	0/1:130:94,36:94:3364:36:1292:-77.4499,0,-219.192	0/1:139:87,52:87:3119:52:1851:-125.026,0,-199.474	0/1:93:72,21:72:2592:21:728:-37.8447,0,-168.657	0/1:110:80,30:80:2857:30:1067:-63.2279,0,-209.978	0/1:51:31,20:31:1116:20:695:-47.5189,0,-58.14	0/1:144:93,51:93:3320:51:1816:-120.373,0,-210.592	0/1:179:90,89:90:3224:89:3157:-230.471,0,-168.399	0/1:135:79,56:79:2828:56:1977:-137.564,0,-141.956	0/1:124:55,69:55:1972:69:2463:-184.596,0,-84.495	0/1:124:63,61:63:2260:61:2172:-158.405,0,-109.194	0/1:73:53,20:53:1908:20:703:-41.6183,0,-133.565	0/1:63:29,34:29:1044:34:1201:-89.4288,0,-52.7236	0/1:54:36,18:36:1284:18:643:-41.9447,0,-86.1722	0/1:156:125,31:125:4492:31:1089:-51.3566,0,-282.163	0/1:164:134,30:134:4791:30:1060:-46.3424,0,-298.54	0/0:64:59,5:59:2112:5:180:0,-2.71385,-157.475	0/1:143:98,45:98:3516:45:1608:-101.963,0,-175.182	0/1:133:84,49:84:3008:49:1724:-115.405,0,-167.166	0/1:76:44,31:44:1580:31:1094:-75.8314,0,-90.1709	0/1:231:162,69:162:5792:69:2428:-149.234,0,-291.833	0/1:260:153,107:153:5483:107:3757:-260.063,0,-276.048	0/1:57:37,20:37:1323:20:703:-46.4348,0,-82.8262	0/1:168:132,36:132:4728:36:1276:-64.57,0,-300.92	0/1:106:65,41:65:2313:41:1463:-100.056,0,-154.816	0/1:119:81,38:81:2904:38:1351:-86.067,0,-143.304	0/1:3:2,1:2:72:1:36:-2.69518,0,-3.95845	0/1:7:2,5:2:72:5:180:-14.4449,0,-2.75433	0/1:6:5,1:5:172:1:36:-1.79209,0,-10.6303	0/0:6:6,0:6:216:0:0:0,-1.80618,-15.0491	0/0:12:12,0:12:432:0:0:0,-3.61236,-29.8246	0/1:346:187,159:187:6700:159:5619:-401.676,0,-312.686	0/1:92:79,13:79:2817:13:464:-14.4028,0,-203.587	0/1:63:39,24:39:1385:24:830:-56.05,0,-89.6979	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.55871	0/1:121:69,52:69:2469:52:1864:-131.615,0,-156.958	0/1:50:34,16:34:1220:16:572:-36.7619,0,-83.0129	0/1:159:112,47:112:4020:47:1680:-103.623,0,-251.643	0/1:113:77,36:77:2743:36:1258:-79.5044,0,-175.096	0/1:131:65,66:65:2328:66:2323:-169.893,0,-105.645	0/1:116:81,35:81:2890:35:1256:-78.4258,0,-169.881	0/1:156:106,50:106:3785:50:1769:-112.529,0,-213.685	0/1:127:98,29:98:3508:29:1017:-53.6099,0,-246.489	0/1:97:74,23:74:2648:23:802:-43.2975,0,-136.267	0/1:106:58,48:58:2076:48:1701:-121.465,0,-98.9045	0/1:147:110,37:110:3928:37:1319:-74.7598,0,-200.55	0/0:2:2,0:2:72:0:0:0,-0.60206,-4.77433	0/1:101:73,28:73:2624:28:976:-57.7456,0,-175.698	0/1:60:33,27:33:1188:27:972:-69.6497,0,-55.452	0/1:7:5,2:5:180:2:72:-4.72951,0,-12.8586	0/1:187:127,60:127:4555:60:2148:-137.295,0,-237.201	0/1:43:37,6:37:1315:6:198:-5.19899,0,-81.2259	0/0:2:2,0:2:72:0:0:0,-0.60206,-4.68712	0/0:13:13,0:13:464:0:0:0,-3.91339,-35.2296	0/1:67:52,15:52:1855:15:523:-27.2058,0,-121.109	0/1:110:80,30:80:2872:30:1055:-62.1467,0,-186.465	0/1:12:10,2:10:360:2:72:-3.22436,0,-19.3712	0/1:220:185,35:185:6647:35:1240:-45.6779,0,-483.121	0/1:186:112,74:112:4016:74:2614:-179.514,0,-195.546	0/1:84:45,39:45:1612:39:1361:-97.4998,0,-79.0139	0/1:92:59,33:59:2112:33:1180:-78.8133,0,-103.66	0/1:164:128,36:128:4572:36:1281:-66.1948,0,-297.659	0/1:188:146,42:146:5202:42:1504:-79.0609,0,-271.011	0/1:80:54,26:54:1936:26:924:-59.3953,0,-100.281	0/1:76:52,24:52:1868:24:847:-53.6704,0,-105.537	0/1:84:39,45:39:1404:45:1590:-118.102,0,-61.7916	0/1:20:14,6:14:504:6:216:-13.7699,0,-25.7045	0/1:100:86,14:86:3088:14:504:-15.5951,0,-208.332	0/1:118:62,56:62:2198:56:2000:-144.752,0,-115.494	0/1:215:137,78:137:4863:78:2779:-185.625,0,-251.717	0/1:230:134,96:134:4804:96:3418:-238.595,0,-230.278	0/1:159:102,57:102:3668:57:2000:-132.408,0,-204.021	0/1:128:66,62:66:2368:62:2188:-158.606,0,-125.888	0/0:19:19,0:19:665:0:0:0,-5.71957,-46.3419	0/1:128:69,59:69:2475:59:2104:-151.098,0,-121.817	0/1:72:53,19:53:1895:19:684:-40.2162,0,-131.82	0/1:214:159,55:159:5686:55:1942:-110.635,0,-344.785	0/1:120:67,53:67:2404:53:1879:-133.265,0,-114.356	0/1:135:78,57:78:2788:57:2019:-141.343,0,-133.632	0/1:94:63,31:63:2251:31:1104:-71.3738,0,-151.562	0/1:184:124,60:124:4443:60:2126:-136.218,0,-286.475	0/1:56:25,31:25:896:31:1095:-82.0014,0,-44.9068	0/1:105:80,25:80:2868:25:887:-48.5366,0,-193.642	0/1:120:79,41:79:2827:41:1463:-95.8417,0,-189.427	0/1:45:27,18:27:972:18:636:-44.0217,0,-52.6439	0/1:106:70,36:70:2493:36:1262:-81.9718,0,-150.178	0/1:114:84,30:84:3000:30:1067:-62.0238,0,-212.089	0/1:142:87,55:87:3110:55:1976:-135.368,0,-151.485	0/1:245:134,111:134:4803:111:3922:-279.423,0,-226.777
chr10	2453648	.	G	A	151977	PASS	AB=0.510067;ABP=7.73216;AC=137;AF=0.728723;AN=188;AO=7360;CIGAR=1X;DP=10003;DPB=10003;DPRA=0;EPP=15976.4;EPPR=5733.53;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9909;MQMR=59.9814;NS=94;NUMALT=1;ODDS=4.1674;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261462;QR=92126;RO=2639;RPL=7359;RPP=15976.4;RPPR=5733.53;RPR=1;RUN=1;SAF=7358;SAP=15967.7;SAR=2;SRF=2639;SRP=5733.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:18,28:18:588:28:993:-75.8367,0,-39.3797	1/1:131:3,128:3:108:128:4538:-398.513,-29.3598,0	0/1:117:53,64:53:1823:64:2284:-170.602,0,-129.124	0/1:200:91,108:91:3185:108:3837:-285.26,0,-226.61	0/1:92:46,46:46:1604:46:1652:-121.274,0,-116.952	0/1:74:31,43:31:1093:43:1517:-114.545,0,-76.4014	0/1:113:88,24:88:3062:24:854:-43.1055,0,-241.734	0/1:172:82,90:82:2851:90:3206:-236.987,0,-205.05	0/1:125:65,60:65:2284:60:2084:-149.969,0,-168.192	0/1:132:57,75:57:1972:75:2660:-199.911,0,-137.996	0/1:52:25,27:25:856:27:964:-71.4233,0,-61.7002	0/1:91:48,43:48:1602:43:1512:-108.977,0,-116.746	1/1:117:0,117:0:0:117:4136:-372.426,-35.2205,0	1/1:58:0,57:0:0:57:2007:-180.541,-17.1587,0	1/1:69:0,69:0:0:69:2438:-219.675,-20.7711,0	1/1:64:0,64:0:0:64:2288:-206.182,-19.2659,0	0/1:58:31,27:31:1099:27:954:-68.7139,0,-81.7597	1/1:77:0,77:0:0:77:2690:-242.347,-23.1793,0	0/1:44:24,20:24:838:20:716:-51.5224,0,-62.491	0/1:186:83,103:83:2900:103:3662:-273.791,0,-205.244	0/1:153:76,77:76:2653:77:2744:-201.146,0,-192.958	0/1:139:83,56:83:2905:56:2004:-138.79,0,-219.842	1/1:73:0,73:0:0:73:2574:-231.91,-21.9752,0	0/1:107:15,92:15:540:92:3266:-261.95,0,-16.7263	0/1:70:32,38:32:1093:38:1335:-99.3748,0,-77.5984	1/1:339:1,338:1:36:338:12072:-1082.73,-98.4509,0	1/1:227:0,227:0:0:227:8070:-726.32,-68.3338,0	0/1:37:23,14:23:806:14:496:-33.8362,0,-61.7201	0/1:254:135,119:135:4748:119:4253:-306.487,0,-351.018	0/1:135:69,66:69:2429:66:2364:-172.379,0,-178.224	1/1:111:0,111:0:0:111:3965:-357.041,-33.4143,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:19:6,13:6:216:13:460:-36.0158,0,-14.0709	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	1/1:254:0,254:0:0:254:9032:-812.863,-76.4616,0	0/1:200:90,110:90:3166:110:3926:-293.326,0,-224.959	0/1:68:30,38:30:1060:38:1339:-100.339,0,-75.2412	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:138:70,68:70:2453:68:2396:-174.353,0,-179.48	0/1:38:20,18:20:684:18:625:-45.1334,0,-50.4373	0/1:138:71,67:71:2462:67:2372:-172.196,0,-180.287	0/1:75:29,46:29:1012:46:1628:-124.232,0,-68.8113	1/1:87:1,86:1:36:86:3013:-267.803,-22.5913,0	0/1:140:75,65:75:2603:65:2312:-166.196,0,-192.372	1/1:214:0,214:0:0:214:7643:-687.907,-64.4204,0	0/1:179:80,99:80:2817:99:3528:-263.847,0,-199.883	1/1:182:0,182:0:0:182:6494:-584.545,-54.7875,0	1/1:92:0,92:0:0:92:3275:-294.971,-27.6948,0	1/1:246:0,246:0:0:246:8791:-791.18,-74.0534,0	0/1:22:10,12:10:352:12:432:-32.5985,0,-25.3955	0/1:128:53,75:53:1874:75:2649:-200.126,0,-130.406	1/1:43:0,43:0:0:43:1515:-136.64,-12.9443,0	0/1:26:16,10:16:557:10:356:-24.5545,0,-42.6288	1/1:106:0,106:0:0:106:3765:-339.041,-31.9092,0	0/1:51:35,16:35:1252:16:572:-36.4609,0,-97.6325	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:41:14,27:14:500:27:960:-74.374,0,-32.9939	0/1:60:32,28:32:1099:28:1000:-72.2536,0,-81.1507	0/1:97:48,49:48:1667:49:1722:-126.064,0,-121.113	1/1:27:0,27:0:0:27:952:-85.993,-8.12781,0	0/1:197:82,115:82:2889:115:4128:-312.4,0,-200.942	1/1:223:3,220:3:104:220:7880:-699.523,-57.4269,0	1/1:95:0,95:0:0:95:3363:-302.888,-28.5979,0	1/1:73:0,73:0:0:73:2602:-234.428,-21.9752,0	0/1:129:76,52:76:2634:52:1827:-125.944,0,-198.543	1/1:198:2,196:2:72:196:6995:-622.776,-52.7672,0	1/1:32:1,31:1:36:31:1112:-96.7931,-6.03469,0	1/1:59:0,59:0:0:59:2102:-189.447,-17.7608,0	1/1:81:0,81:0:0:81:2875:-258.988,-24.3834,0	1/1:29:0,29:0:0:29:1023:-92.3817,-8.72987,0	0/1:129:60,69:60:2073:69:2449:-181.831,0,-148.005	1/1:93:0,93:0:0:93:3290:-296.321,-27.9958,0	1/1:225:0,225:0:0:225:7940:-714.633,-67.7318,0	1/1:206:1,205:1:36:205:7318:-655.073,-58.4139,0	1/1:121:1,120:1:32:120:4286:-382.718,-33.2253,0	1/1:89:0,89:0:0:89:3152:-283.905,-26.7917,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:114:1,113:1:36:113:4039:-360.1,-30.7191,0	0/1:123:61,62:61:2166:62:2228:-163.757,0,-158.179	0/1:303:147,156:147:5173:156:5514:-405.179,0,-374.504	1/1:107:0,107:0:0:107:3736:-336.445,-32.2102,0	1/1:65:0,65:0:0:65:2308:-207.981,-19.567,0	0/1:89:46,43:46:1577:43:1520:-110.301,0,-115.423	0/1:158:69,89:69:2412:89:3099:-231.576,0,-169.773	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	0/1:84:39,45:39:1323:45:1584:-117.561,0,-94.0745	0/1:85:42,43:42:1471:43:1509:-110.515,0,-107.096	0/1:53:33,20:33:1168:20:708:-48.091,0,-89.4726	0/1:89:52,37:52:1797:37:1298:-90.328,0,-135.216	0/1:86:58,28:58:2026:28:970:-61.7216,0,-156.721	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	1/1:116:0,116:0:0:116:4143:-373.054,-34.9195,0
chr10	2466233	.	CAATG	CAATA,TAATA	221851	PASS	AB=0.497968,0.497012;ABP=3.16033,3.33475;AC=135,51;AF=0.725806,0.274194;AN=186;AO=6012,2093;CIGAR=4M1X,1X3M1X;DP=8142;DPB=8143;DPRA=88.4891,0.953356;EPP=3.08109,16.258;EPPR=3.0103;GTI=1;LEN=1,5;MEANALT=2,2.39655;MQM=59.9938,59.989;MQMR=60;NS=93;NUMALT=2;ODDS=1.961;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=88,88;PQR=0;PRO=0;QA=214053,73246;QR=72;RO=2;RPL=42,11;RPP=12695.6,4452.86;RPPR=3.0103;RPR=5970,2082;RUN=1,1;SAF=3055,1114;SAP=6.47917,21.9186;SAR=2957,979;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:18:0,11,7:0:0:11,7:392,251:-52.7818,-20.8306,-17.5193,-32.3087,0,-30.2015	1/1:93:0,93,0:0:0:93,0:3313,0:-298.388,-27.9958,0,-298.388,-27.9958,-298.388	1/2:107:0,55,51:0:0:55,51:1941,1751:-300.368,-142.307,-125.75,-158.195,0,-142.843	1/2:128:0,62,66:0:0:62,66:2207,2333:-370.24,-190.364,-171.7,-180.231,0,-160.363	1/2:51:0,26,25:0:0:26,25:928,880:-147.649,-71.9921,-64.1653,-76.0115,0,-68.4857	1/2:27:0,17,10:0:0:17,10:597,338:-76.3314,-27.7355,-22.618,-48.9386,0,-45.9283	1/2:97:0,48,49:0:0:48,49:1716,1726:-280.796,-140.875,-126.425,-140.276,0,-125.526	1/2:105:0,43,59:0:0:43,59:1503,2050:-289.013,-166.744,-153.799,-122.348,0,-104.587	1/2:82:0,39,42:0:0:39,42:1380,1467:-231.815,-119.41,-107.67,-112.484,0,-99.8407	1/2:78:0,45,32:0:0:45,32:1612,1122:-222.874,-91.4021,-77.8557,-131.571,0,-121.938	1/2:104:0,48,55:0:0:48,55:1716,1934:-297.481,-157.558,-143.109,-140.053,0,-123.497	1/2:136:0,75,61:0:0:75,61:2669,2088:-387.354,-169.825,-147.248,-217.877,0,-199.514	1/1:143:0,143,0:0:0:143,0:5086,0:-457.886,-43.0473,0,-457.886,-43.0473,-457.886	1/1:141:0,138,0:0:0:138,0:4915,0:-442.248,-41.5421,0,-442.248,-41.5421,-442.248	1/1:127:0,127,0:0:0:127,0:4551,0:-409.755,-38.2308,0,-409.755,-38.2308,-409.755	1/1:114:0,112,1:0:0:112,1:3999,35:-359.745,-33.7154,0,-356.897,-30.8726,-356.596	1/2:113:0,66,46:0:0:66,46:2354,1616:-323.447,-131.551,-111.683,-191.919,0,-178.072	1/1:103:0,103,0:0:0:103,0:3645,0:-328.256,-31.0061,0,-328.256,-31.0061,-328.256	1/2:91:0,48,42:0:0:48,42:1713,1470:-259.241,-119.59,-105.14,-139.644,0,-127.001	1/2:90:0,50,40:0:0:50,40:1769,1388:-257.264,-113.174,-98.1227,-144.44,0,-132.399	1/2:102:0,57,45:0:0:57,45:2040,1569:-294.315,-127.954,-110.796,-166.713,0,-153.167	1/2:25:0,6,19:0:0:6,19:216,651:-70.8193,-53.1907,-51.3845,-17.9843,0,-12.2648	1/1:33:0,33,0:0:0:33,0:1180,0:-106.508,-9.93399,0,-106.508,-9.93399,-106.508	1/1:89:0,85,4:0:0:85,4:3012,130:-270.987,-25.5876,0,-260.496,-14.77,-259.292	1/2:30:0,18,12:0:0:18,12:629,415:-85.2369,-34.0688,-28.6502,-51.5152,0,-47.9029	1/1:183:0,183,0:0:0:183,0:6522,0:-587.004,-55.0885,0,-587.004,-55.0885,-587.004	1/1:146:0,146,0:0:0:146,0:5180,0:-466.343,-43.9504,0,-466.343,-43.9504,-466.343	1/2:69:0,39,29:0:0:39,29:1375,1021:-195.069,-83.1131,-71.373,-111.948,0,-103.218	1/2:120:0,57,61:0:0:57,61:2019,2152:-339.78,-175.308,-158.149,-164.546,0,-146.183	1/2:43:0,26,17:0:0:26,17:923,594:-123.878,-48.6697,-40.8429,-75.56,0,-70.4425	1/1:76:0,76,0:0:0:76,0:2708,0:-243.965,-22.8783,0,-243.965,-22.8783,-243.965	1/1:5:0,5,0:0:0:5,0:172,0:-15.818,-1.50515,0,-15.818,-1.50515,-15.818	1/2:5:0,3,2:0:0:3,2:100,67:-13.8533,-5.76078,-4.85769,-8.42677,0,-7.82471	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:8:0,8,0:0:0:8,0:280,0:-25.5393,-2.40824,0,-25.5393,-2.40824,-25.5393	1/1:314:0,313,0:0:0:313,0:11138,0:-1001.93,-94.2224,0,-1001.93,-94.2224,-1001.93	1/2:50:0,22,28:0:0:22,28:788,984:-144.712,-80.4448,-73.8221,-64.6221,0,-56.1933	1/2:130:0,73,56:0:0:73,56:2604,1979:-373.456,-161.177,-139.202,-212.284,0,-195.426	2/2:1:0,0,1:0:0:0,1:0,35:-3.49863,-3.49863,-3.49863,-0.30103,-0.30103,0	1/2:73:0,37,36:0:0:37,36:1324,1268:-211.555,-103.586,-92.4481,-108.324,0,-97.4869	1/2:77:0,36,41:0:0:36,41:1258,1428:-218.807,-116.473,-105.636,-102.682,0,-90.34	1/2:54:0,24,30:0:0:24,30:860,1044:-155.382,-85.2384,-78.0137,-70.4971,0,-61.4662	1/2:141:0,78,63:0:0:78,63:2761,2235:-407.344,-182.449,-158.969,-225.249,0,-206.284	1/1:109:0,107,0:0:0:107,0:3816,0:-343.349,-32.2102,0,-343.349,-32.2102,-343.349	1/2:91:0,45,46:0:0:45,46:1594,1606:-260.831,-130.98,-117.434,-130.202,0,-116.355	1/1:80:0,80,0:0:0:80,0:2856,0:-257.278,-24.0824,0,-257.278,-24.0824,-257.278	1/2:99:0,50,49:0:0:50,49:1760,1725:-284.061,-140.784,-125.732,-143.629,0,-128.879	1/1:47:0,47,0:0:0:47,0:1684,0:-151.847,-14.1484,0,-151.847,-14.1484,-151.847	1/1:112:1,111,0:1:36:111,0:3943,0:-351.465,-30.1171,0,-351.766,-33.4143,-354.703	1/1:80:0,80,0:0:0:80,0:2856,0:-257.278,-24.0824,0,-257.278,-24.0824,-257.278	1/2:4:0,2,2:0:0:2,2:72,71:-12.0173,-6.14,-5.53794,-6.23466,0,-5.6326	1/2:80:0,43,37:0:0:43,37:1513,1276:-227.17,-104.001,-91.057,-123.517,0,-112.379	1/1:22:0,22,0:0:0:22,0:784,0:-70.8839,-6.62266,0,-70.8839,-6.62266,-70.8839	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:102:0,102,0:0:0:102,0:3616,0:-325.642,-30.7051,0,-325.642,-30.7051,-325.642	1/2:23:0,16,7:0:0:16,7:572,251:-67.4695,-20.8306,-16.0142,-46.9969,0,-44.8897	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chr10	2520188	.	A	G	114299	PASS	AB=0.481515;ABP=16.2566;AC=138;AF=0.741935;AN=186;AO=5849;CIGAR=1X;DP=8177;DPB=8177;DPRA=0;EPP=4068.06;EPPR=1308.44;GTI=0;LEN=1;MEANALT=1.03226;MQM=30.7726;MQMR=43.3692;NS=93;NUMALT=1;ODDS=0.235981;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209067;QR=80612;RO=2324;RPL=1269;RPP=4072.98;RPPR=1312.86;RPR=4580;RUN=1;SAF=5848;SAP=12695.3;SAR=1;SRF=2323;SRP=5040.83;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:82:37,45:37:1264:45:1600:-84.9835,0,-85.6438	1/1:61:0,61:0:0:61:2192:-150.258,-18.3628,0	0/1:168:69,99:69:2385:99:3552:-192.8,0,-157.255	0/1:222:112,110:112:3835:110:3926:-231.305,0,-273.557	0/1:55:42,13:42:1448:13:468:-17.696,0,-110.956	0/1:53:23,30:23:788:30:1076:-58.25,0,-53.0757	0/1:131:64,67:64:2199:67:2404:-144.642,0,-155.859	0/1:111:51,60:51:1756:60:2148:-114.013,0,-119.886	0/1:119:63,56:63:2166:56:1963:-100.651,0,-151.728	0/1:78:32,46:32:1082:46:1648:-102.986,0,-71.2374	0/1:43:37,6:37:1304:6:216:-3.85567,0,-102.78	0/1:96:51,45:51:1796:45:1616:-82.2346,0,-126.935	1/1:60:0,60:0:0:60:2125:-146.368,-18.0618,0	1/1:36:0,36:0:0:36:1292:-93.5619,-10.8371,0	1/1:63:0,63:0:0:63:2264:-171.772,-18.9649,0	1/1:44:0,44:0:0:44:1561:-113.956,-13.2453,0	1/1:20:0,20:0:0:20:716:-49.4515,-6.0206,0	1/1:34:0,34:0:0:34:1190:-82.477,-10.235,0	0/1:28:18,10:18:624:10:341:-15.8977,0,-46.5017	0/1:292:168,124:168:5925:124:4439:-247.822,0,-435.85	0/1:82:44,38:44:1524:38:1360:-74.372,0,-109.79	0/1:102:46,56:46:1609:56:2016:-127.804,0,-112.393	1/1:164:0,163:0:0:163:5813:-439.456,-49.0679,0	1/1:124:8,116:8:269:116:4134:-277.121,-13.2835,0	0/1:137:64,73:64:2204:73:2609:-148.004,0,-153.228	1/1:229:1,228:1:32:228:8132:-643.148,-65.7494,0	1/1:298:1,297:1:36:297:10656:-771,-86.1859,0	0/1:25:20,5:20:692:5:180:-5.67373,0,-53.8663	0/1:180:77,103:77:2630:103:3700:-239.342,0,-180.776	0/1:89:40,49:40:1361:49:1735:-100.65,0,-93.8232	1/1:123:1,122:1:32:122:4329:-329.513,-33.8479,0	1/1:9:0,9:0:0:9:324:-23.8027,-2.70927,0	0/1:31:14,17:14:492:17:612:-35.3706,0,-33.8602	1/1:13:0,13:0:0:13:449:-31.5281,-3.91339,0	1/1:6:0,6:0:0:6:216:-15.0491,-1.80618,0	1/1:33:0,33:0:0:33:1162:-80.2817,-9.93399,0	1/1:180:0,180:0:0:180:6446:-505.631,-54.1854,0	0/1:75:14,61:14:492:61:2192:-136.21,0,-20.054	0/1:28:16,12:16:561:12:423:-20.556,0,-38.6078	.:.:.:.:.:.:.:.	0/1:144:73,71:73:2556:71:2539:-141.269,0,-180.723	0/1:48:28,20:28:971:20:720:-38.3484,0,-70.7804	0/1:106:53,53:53:1845:53:1900:-105.449,0,-130.72	0/1:40:26,14:26:908:14:504:-26.7514,0,-69.0215	1/1:52:0,52:0:0:52:1860:-142.306,-15.6536,0	0/1:146:64,80:64:2196:80:2848:-183.387,0,-152.35	1/1:85:0,85:0:0:85:3041:-206.703,-25.5876,0	0/1:136:74,62:74:2608:62:2208:-127.222,0,-189.806	1/1:111:0,111:0:0:111:3959:-301.339,-33.4143,0	1/1:110:0,110:0:0:110:3929:-299.956,-33.1133,0	1/1:173:0,172:0:0:172:6157:-487.535,-51.7772,0	0/1:7:3,4:3:108:4:144:-9.19458,0,-7.82863	0/1:130:66,64:66:2324:64:2288:-118.798,0,-163.219	1/1:80:0,80:0:0:80:2867:-227.326,-24.0824,0	0/1:10:6,4:6:212:4:144:-7.11365,0,-15.0613	1/1:136:0,136:0:0:136:4857:-353.592,-40.9401,0	0/1:96:43,53:43:1497:53:1893:-115.93,0,-104.447	0/1:6:1,5:1:36:5:180:-11.9328,0,-1.76063	0/1:19:4,15:4:140:15:540:-37.6321,0,-7.12584	0/1:96:49,47:49:1681:47:1684:-93.6703,0,-119.722	0/1:85:49,36:49:1724:36:1296:-71.8002,0,-126.798	1/1:5:0,5:0:0:5:180:-14.0509,-1.50515,0	0/1:89:75,14:75:2609:14:504:-12.5385,0,-205.82	1/1:142:0,142:0:0:142:5108:-388.897,-42.7463,0	1/1:72:0,72:0:0:72:2576:-188.133,-21.6742,0	1/1:66:0,66:0:0:66:2330:-177.659,-19.868,0	0/1:59:33,26:33:1149:26:928:-51.2747,0,-84.5752	1/1:150:0,150:0:0:150:5359:-408.016,-45.1545,0	1/1:18:0,18:0:0:18:648:-47.573,-5.41854,0	1/1:40:0,40:0:0:40:1436:-97.7352,-12.0412,0	1/1:39:0,39:0:0:39:1400:-110.757,-11.7402,0	1/1:16:0,16:0:0:16:576:-44.2908,-4.81648,0	0/1:153:81,72:81:2743:72:2572:-129.956,0,-193.986	1/1:114:0,114:0:0:114:4081:-279.297,-34.3174,0	1/1:130:0,130:0:0:130:4637:-337.045,-39.1339,0	1/1:176:1,175:1:36:175:6260:-469.649,-49.383,0	1/1:89:0,89:0:0:89:3191:-220.437,-26.7917,0	1/1:73:0,73:0:0:73:2620:-179.972,-21.9752,0	1/1:4:0,4:0:0:4:144:-10.1239,-1.20412,0	1/1:120:0,120:0:0:120:4308:-312.716,-36.1236,0	0/1:65:33,32:33:1145:32:1136:-59.2752,0,-79.7893	0/1:303:142,161:142:4949:161:5727:-344.286,0,-348.065	1/1:58:0,58:0:0:58:2066:-156.259,-17.4597,0	1/1:55:0,55:0:0:55:1961:-150.737,-16.5567,0	0/1:39:20,19:20:712:19:680:-39.7809,0,-51.5407	0/1:118:67,51:67:2344:51:1832:-103.373,0,-171.649	1/1:23:0,23:0:0:23:828:-56.7525,-6.92369,0	0/1:57:29,28:29:1016:28:1008:-51.1728,0,-71.094	0/1:61:29,32:29:985:32:1143:-60.6592,0,-68.4439	0/1:36:20,16:20:704:16:576:-31.253,0,-50.7607	0/1:90:63,27:63:2162:27:964:-43.2258,0,-163.531	0/1:97:79,18:79:2746:18:648:-20.5891,0,-213.858	1/1:14:0,14:0:0:14:504:-37.7769,-4.21442,0	1/1:66:0,66:0:0:66:2353:-175.786,-19.868,0
chr10	2583136	.	A	G	180241	PASS	AB=0.53001;ABP=51.4932;AC=138;AF=0.734043;AN=188;AO=8623;CIGAR=1X;DP=11554;DPB=11554;DPRA=0;EPP=18718.9;EPPR=6350.23;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.9711;MQMR=59.9576;NS=94;NUMALT=1;ODDS=0.0275331;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=308425;QR=105006;RO=2927;RPL=0;RPP=18727.6;RPPR=6350.23;RPR=8623;RUN=1;SAF=8622;SAP=18718.9;SAR=1;SRF=2927;SRP=6358.91;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:17,31:17:604:31:1104:-85.2212,0,-40.2412	1/1:141:0,141:0:0:141:5068:-456.26,-42.4452,0	0/1:137:50,87:50:1796:87:3124:-240.145,0,-120.681	0/1:245:121,124:121:4333:124:4420:-324.219,0,-316.391	0/1:85:37,48:37:1332:48:1720:-129.498,0,-94.5664	0/1:72:39,33:39:1404:33:1188:-85.5544,0,-104.985	0/1:176:73,103:73:2624:103:3688:-279.133,0,-183.424	0/1:141:58,83:58:2069:83:2927:-221.208,0,-144.034	0/1:106:37,69:37:1332:69:2443:-188.214,0,-88.2732	0/1:87:37,50:37:1332:50:1788:-135.013,0,-93.9928	0/1:73:32,41:32:1152:41:1446:-108.457,0,-82.015	0/1:82:36,46:36:1296:46:1656:-124.644,0,-92.2595	1/1:111:0,111:0:0:111:3968:-357.308,-33.4143,0	1/1:97:0,97:0:0:97:3492:-314.472,-29.1999,0	1/1:79:0,79:0:0:79:2836:-255.478,-23.7814,0	1/1:82:0,82:0:0:82:2943:-265.103,-24.6845,0	1/1:81:0,81:0:0:81:2897:-260.966,-24.3834,0	1/1:75:0,75:0:0:75:2681:-241.534,-22.5773,0	0/1:48:16,32:16:576:32:1148:-89.1804,0,-37.7255	0/1:253:102,151:102:3660:151:5420:-411.767,0,-253.443	0/1:167:72,95:72:2573:95:3364:-252.703,0,-181.476	0/1:169:99,70:99:3549:70:2520:-176.177,0,-268.742	1/1:82:0,82:0:0:82:2914:-262.493,-24.6845,0	1/1:140:10,130:10:360:130:4652:-386.096,-9.3999,0	0/1:92:44,48:44:1584:48:1707:-126.22,0,-115.157	1/1:421:0,421:0:0:421:15065:-1355.57,-126.734,0	1/1:270:0,270:0:0:270:9681:-871.236,-81.2781,0	0/1:37:22,15:22:792:15:540:-37.7984,0,-60.4676	0/1:323:150,173:150:5377:173:6152:-456.544,0,-386.798	0/1:126:59,67:59:2120:67:2395:-177.877,0,-153.121	1/1:157:0,157:0:0:157:5617:-505.627,-47.2617,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:227:0,227:0:0:227:8139:-732.523,-68.3338,0	0/1:293:126,167:126:4532:167:5980:-450.101,0,-319.843	0/1:72:34,38:34:1220:38:1360:-101.026,0,-88.4326	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:160:75,84:75:2696:84:2997:-221.737,0,-194.66	0/1:44:23,21:23:828:21:748:-54.4,0,-61.5988	0/1:185:87,98:87:3113:98:3493:-258.888,0,-224.704	0/1:80:39,41:39:1404:41:1476:-109.054,0,-102.577	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:170:77,93:77:2753:93:3326:-248.383,0,-196.835	1/1:146:0,146:0:0:146:5245:-472.177,-43.9504,0	0/1:283:147,136:147:5273:136:4876:-353.8,0,-389.511	1/1:146:0,146:0:0:146:5233:-471.087,-43.9504,0	1/1:146:0,146:0:0:146:5240:-471.736,-43.9504,0	1/1:244:0,243:0:0:243:8716:-784.069,-73.1503,0	0/1:10:1,9:1:32:9:324:-26.4956,0,-0.189013	0/1:167:69,98:69:2484:98:3493:-264.308,0,-173.541	1/1:85:0,84:0:0:84:2997:-269.601,-25.2865,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:167:0,167:0:0:167:5954:-535.967,-50.272,0	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:23:7,16:7:252:16:572:-44.8897,0,-16.1053	0/1:108:44,64:44:1584:64:2281:-173.038,0,-110.34	0/1:147:71,76:71:2548:76:2713:-200.158,0,-185.319	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:259:144,115:144:5184:115:4114:-292.477,0,-388.712	1/1:260:2,257:2:68:257:9177:-819.388,-71.8622,0	1/1:90:0,90:0:0:90:3220:-290.023,-27.0927,0	1/1:114:0,114:0:0:114:4089:-368.195,-34.3174,0	0/1:228:117,111:117:4212:111:3965:-288.134,0,-309.997	1/1:108:0,108:0:0:108:3842:-345.975,-32.5112,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:139:2,137:2:72:137:4882:-432.694,-35.0064,0	1/1:117:0,117:0:0:117:4204:-378.528,-35.2205,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:139:67,72:67:2408:72:2556:-188.446,0,-175.133	1/1:71:1,70:1:36:70:2516:-223.075,-17.7749,0	1/1:227:0,227:0:0:227:8141:-732.699,-68.3338,0	1/1:199:0,199:0:0:199:7109:-639.865,-59.905,0	1/1:172:0,172:0:0:172:6110:-550,-51.7772,0	1/1:100:0,100:0:0:100:3558:-320.424,-30.103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:159:0,159:0:0:159:5708:-513.836,-47.8638,0	0/1:171:89,82:89:3181:82:2944:-213.717,0,-235.036	0/1:388:205,183:205:7300:183:6549:-472.689,0,-540.249	1/1:127:0,127:0:0:127:4532:-408.043,-38.2308,0	1/1:95:0,95:0:0:95:3397:-305.943,-28.5979,0	0/1:102:49,53:49:1764:53:1880:-138.748,0,-128.283	0/1:182:89,93:89:3196:93:3335:-245.579,0,-233.075	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:103:49,54:49:1756:54:1940:-143.865,0,-127.318	0/1:75:31,44:31:1116:44:1580:-119.914,0,-78.1744	0/1:50:21,29:21:756:29:1040:-78.8629,0,-53.3157	0/1:147:73,74:73:2624:74:2648:-194.315,0,-192.155	0/1:87:55,32:55:1957:32:1144:-77.0776,0,-150.214	1/1:181:0,181:0:0:181:6462:-581.664,-54.4864,0	1/1:114:0,114:0:0:114:4084:-367.746,-34.3174,0
chr10	2583296	.	T	A	58747.4	PASS	AB=0.499928;ABP=3.01061;AC=49;AF=0.260638;AN=188;AO=3463;CIGAR=1X;DP=12082;DPB=12082;DPRA=1.34834;EPP=7522.82;EPPR=18710.2;GTI=2;LEN=1;MEANALT=1.05556;MQM=59.9833;MQMR=59.9979;NS=94;NUMALT=1;ODDS=0.449136;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124055;QR=304035;RO=8615;RPL=3463;RPP=7522.82;RPPR=18710.2;RPR=0;RUN=1;SAF=0;SAP=7522.82;SAR=3463;SRF=0;SRP=18710.2;SRR=8615;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:13,10:13:445:10:360:-25.8206,0,-33.4517	0/0:175:175,0:175:6193:0:0:0,-52.6802,-557.467	0/1:161:73,88:73:2514:88:3140:-234.358,0,-178.04	0/1:382:183,199:183:6445:199:7138:-527.481,0,-465.148	0/1:95:47,48:47:1653:48:1724:-126.848,0,-120.458	0/1:51:20,31:20:716:31:1101:-84.0458,0,-49.4152	0/1:242:122,120:122:4306:120:4263:-310.999,0,-314.87	0/1:166:86,80:86:3042:80:2880:-209.465,0,-224.038	0/1:97:52,45:52:1822:45:1616:-116.53,0,-135.057	0/1:107:59,48:59:2078:48:1716:-122.515,0,-155.077	0/1:39:21,18:21:741:18:644:-46.5504,0,-55.2714	0/1:93:46,47:46:1611:47:1692:-124.571,0,-117.277	0/0:81:81,0:81:2876:0:0:0,-24.3834,-259.078	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:80:80,0:80:2826:0:0:0,-24.0824,-254.577	0/0:66:66,0:66:2345:0:0:0,-19.868,-211.308	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.784	0/0:61:61,0:61:2149:0:0:0,-18.3628,-193.676	0/1:32:10,22:10:356:22:792:-61.9727,0,-22.7483	0/1:359:205,154:205:7204:154:5514:-388.316,0,-540.348	0/1:206:108,98:108:3811:98:3499:-253.109,0,-281.175	0/1:293:90,203:90:3167:203:7287:-567.676,0,-197.051	0/0:110:110,0:110:3834:0:0:0,-33.1133,-345.255	0/1:74:62,12:62:2197:12:432:-16.945,0,-175.718	0/1:86:51,35:51:1805:35:1260:-87.8169,0,-136.841	0/0:439:439,0:439:15514:0:0:0,-132.152,-1395.97	0/0:296:296,0:296:10531:0:0:0,-89.1049,-947.709	0/1:46:22,24:22:788:24:855:-63.4236,0,-57.3974	0/1:511:262,249:262:9292:249:8939:-650.661,0,-682.426	0/1:76:38,38:38:1322:38:1364:-100.182,0,-96.3972	0/0:163:163,0:163:5744:0:0:0,-49.0679,-517.08	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:31:16,15:16:545:15:540:-39.6046,0,-40.039	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:206:205,1:205:7300:1:36:0,-58.4139,-653.458	0/1:325:157,167:157:5523:167:5977:-440.012,0,-399.301	0/1:32:15,17:15:532:17:612:-45.7805,0,-38.5801	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:201:112,89:112:3982:89:3166:-224.655,0,-298.062	0/1:38:25,13:25:888:13:464:-30.6584,0,-68.7999	0/1:248:110,138:110:3894:138:4956:-370.906,0,-275.999	0/1:77:38,39:38:1345:39:1400:-103.12,0,-98.1688	0/0:65:65,0:65:2255:0:0:0,-19.5669,-203.21	0/1:129:80,49:80:2864:49:1756:-119.491,0,-219.164	0/0:199:199,0:199:7034:0:0:0,-59.905,-633.123	0/1:279:138,141:138:4872:141:5014:-367.42,0,-354.646	0/0:181:181,0:181:6325:0:0:0,-54.4864,-569.345	0/0:151:151,0:151:5351:0:0:0,-45.4555,-481.724	0/0:221:221,0:221:7798:0:0:0,-66.5276,-701.854	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:226:113,112:113:3977:112:4012:-293.325,0,-290.175	0/0:39:39,0:39:1361:0:0:0,-11.7402,-122.784	0/1:23:8,15:8:284:15:536:-41.6511,0,-18.9797	0/0:174:173,0:173:6052:0:0:0,-52.0782,-544.426	0/1:68:38,30:38:1326:30:1080:-77.0432,0,-99.1656	0/1:11:3,8:3:93:8:288:-22.9561,0,-5.3654	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:56:31,25:31:1112:25:900:-64.4633,0,-83.5337	0/1:91:40,51:40:1421:51:1836:-138.127,0,-100.792	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2579	0/1:387:174,212:174:6107:212:7601:-567.69,0,-433.305	0/0:196:195,1:195:6853:1:36:0,-55.4036,-613.247	0/0:74:74,0:74:2614:0:0:0,-22.2762,-235.506	0/0:186:186,0:186:6559:0:0:0,-55.9916,-590.392	0/1:301:167,134:167:5824:134:4812:-342.624,0,-433.667	0/0:134:134,0:134:4690:0:0:0,-40.338,-422.175	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:175:174,1:174:6133:1:36:0,-49.082,-548.474	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/1:104:50,54:50:1735:54:1929:-142.578,0,-125.121	0/0:69:69,0:69:2437:0:0:0,-20.7711,-219.585	0/0:136:136,0:136:4807:0:0:0,-40.9401,-432.787	0/0:303:303,0:303:10691:0:0:0,-91.2121,-962.106	0/0:122:122,0:122:4365:0:0:0,-36.7257,-393.023	0/0:88:88,0:88:3106:0:0:0,-26.4906,-279.767	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:211:210,1:210:7350:1:36:0,-59.9191,-657.955	0/1:218:109,109:109:3809:109:3911:-286.557,0,-277.382	0/1:410:228,182:228:7996:182:6494:-461.121,0,-596.24	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.161	0/1:97:46,51:46:1648:51:1832:-135.961,0,-119.409	0/1:143:68,75:68:2413:75:2700:-200.196,0,-174.378	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/1:77:34,43:34:1216:43:1548:-116.434,0,-86.5673	0/1:61:26,35:26:932:35:1243:-93.811,0,-65.836	0/1:14:8,6:8:284:6:212:-15.2104,0,-21.6889	0/1:46:23,23:23:820:23:824:-60.6359,0,-60.2751	0/1:59:17,42:17:604:42:1512:-118.614,0,-36.9298	0/0:202:202,0:202:7131:0:0:0,-60.8081,-641.848	0/0:93:92,1:92:3281:1:36:0,-24.3975,-291.911
chr10	2600274	.	C	T	16336.2	PASS	AB=0.463968;ABP=28.3609;AC=49;AF=0.269231;AN=182;AO=1047;CIGAR=1X;DP=4423;DPB=4423;DPRA=0.945588;EPP=2276.54;EPPR=7305.68;GTI=2;LEN=1;MEANALT=1.04082;MQM=59.9666;MQMR=59.9887;NS=91;NUMALT=1;ODDS=2.8354;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36857;QR=119920;RO=3371;RPL=0;RPP=2276.54;RPPR=7305.68;RPR=1047;RUN=1;SAF=0;SAP=2276.54;SAR=1047;SRF=0;SRP=7323.04;SRR=3371;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:12,5:12:413:5:180:-11.4346,0,-32.3803	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/1:82:49,33:49:1760:33:1133:-77.5856,0,-133.999	0/1:91:42,49:42:1504:49:1732:-128.453,0,-108.261	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:14:12,2:12:423:2:68:-2.24329,0,-34.1896	0/1:40:22,18:22:788:18:632:-45.1656,0,-59.2036	0/1:46:30,16:30:1072:16:572:-37.966,0,-82.9451	0/1:49:31,17:31:1112:17:591:-38.7059,0,-85.5821	0/1:40:22,18:22:784:18:640:-45.8881,0,-58.8427	0/1:44:18,26:18:633:26:915:-69.4202,0,-44.0497	0/1:87:46,40:46:1599:40:1400:-100.173,0,-118.075	0/0:70:70,0:70:2474:0:0:0,-21.0721,-222.914	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:73:73,0:73:2563:0:0:0,-21.9752,-230.917	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.13	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:36:24,12:24:852:12:423:-27.568,0,-66.1633	0/1:64:32,32:32:1144:32:1147:-84.2739,0,-84.0036	0/1:102:56,46:56:1999:46:1631:-116.373,0,-149.459	0/1:23:9,14:9:324:14:495:-37.9593,0,-22.5822	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:37:31,6:31:1098:6:216:-8.6524,0,-87.9905	0/1:23:15,8:15:536:8:271:-17.7957,0,-41.6511	0/0:88:88,0:88:3129:0:0:0,-26.4906,-281.836	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/1:24:4,20:4:144:20:698:-55.9167,0,-6.0889	0/1:77:37,40:37:1324:40:1404:-103.475,0,-96.2828	0/1:56:29,27:29:1040:27:960:-69.8586,0,-77.0567	0/0:69:68,1:68:2428:1:36:0,-17.1728,-215.178	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:147:146,0:146:5162:0:0:0,-43.9504,-464.365	0/1:41:23,18:23:812:18:627:-44.4122,0,-61.0587	0/1:35:26,9:26:923:9:312:-17.8787,0,-72.8507	.:.:.:.:.:.:.:.	0/1:50:20,30:20:708:30:1056:-80.2994,0,-48.9941	0/1:21:7,14:7:248:14:488:-37.9288,0,-16.3426	0/1:20:12,8:12:428:8:284:-19.8828,0,-32.8382	0/1:36:17,19:17:612:19:668:-49.6062,0,-44.5764	0/0:50:50,0:50:1767:0:0:0,-15.0515,-159.313	0/1:20:15,5:15:536:5:176:-10.1644,0,-42.5542	0/0:42:41,0:41:1460:0:0:0,-12.3422,-131.336	0/1:49:31,18:31:1085:18:640:-43.1788,0,-83.2065	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	.:.:.:.:.:.:.:.	0/1:63:29,34:29:1027:34:1184:-87.8998,0,-73.7773	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:9:6,3:6:216:3:100:-6.62117,0,-17.0812	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/1:18:12,6:12:420:6:208:-13.6405,0,-32.7155	0/1:5:1,4:1:32:4:140:-11.4394,0,-1.69416	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:35:13,22:13:468:22:768:-58.9043,0,-31.9236	0/1:81:50,31:50:1775:31:1100:-74.9269,0,-135.649	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:119:57,62:57:2031:62:2199:-162.353,0,-147.239	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.443	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:91:60,31:60:2151:31:1084:-70.4705,0,-166.463	0/0:96:96,0:96:3434:0:0:0,-28.8989,-309.272	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:32:32,0:32:1124:0:0:0,-9.63296,-101.465	0/0:40:40,0:40:1397:0:0:0,-12.0412,-126.025	0/0:19:19,0:19:659:0:0:0,-5.71957,-59.6323	0/1:90:50,40:50:1765:40:1401:-99.2924,0,-132.039	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.47	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:59:59,0:59:2092:0:0:0,-17.7608,-188.548	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/1:40:15,25:15:540:25:888:-68.1978,0,-36.8953	0/1:73:52,21:52:1847:21:732:-44.2262,0,-144.534	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	0/1:34:16,18:16:563:18:631:-46.8807,0,-40.7641	0/1:93:50,43:50:1743:43:1515:-108.647,0,-129.155	0/0:16:16,0:16:559:0:0:0,-4.81648,-50.6376	0/1:55:23,32:23:816:32:1121:-84.6391,0,-57.2051	0/1:49:11,38:11:392:38:1331:-105.339,0,-20.8696	0/1:37:23,14:23:820:14:500:-34.1981,0,-62.9844	0/1:63:40,23:40:1428:23:816:-54.7968,0,-109.853	0/1:53:16,37:16:563:37:1320:-103.147,0,-35.0446	0/0:104:103,0:103:3649:0:0:0,-31.0061,-328.256	0/0:97:97,0:97:3459:0:0:0,-29.1999,-311.523
chr10	2600283	.	T	C	16935.6	PASS	AB=0.461538;ABP=32.4087;AC=49;AF=0.269231;AN=182;AO=1060;CIGAR=1X;DP=4513;DPB=4513;DPRA=0.942897;EPP=2304.77;EPPR=7490.25;GTI=1;LEN=1;MEANALT=1.02041;MQM=59.9708;MQMR=59.9867;NS=91;NUMALT=1;ODDS=0.0274754;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37809;QR=123584;RO=3452;RPL=0;RPP=2304.77;RPPR=7490.25;RPR=1060;RUN=1;SAF=0;SAP=2304.77;SAR=1060;SRF=0;SRP=7498.93;SRR=3452;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:83:49,34:49:1751:34:1220:-85.1213,0,-132.888	0/1:90:42,48:42:1493:48:1714:-127.432,0,-107.57	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:15:12,3:12:432:3:104:-5.18736,0,-34.6975	0/1:41:22,19:22:792:19:651:-46.5645,0,-59.2634	0/1:48:32,16:32:1148:16:576:-37.7255,0,-89.1804	0/1:48:31,16:31:1101:16:568:-36.9439,0,-84.8903	0/1:43:25,18:25:900:18:648:-45.7076,0,-68.3767	0/1:45:18,27:18:648:27:956:-72.808,0,-45.1055	0/1:92:51,41:51:1817:41:1453:-103.369,0,-136.115	0/0:74:74,0:74:2622:0:0:0,-22.2762,-236.225	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:73:72,1:72:2592:1:36:0,-18.3769,-229.93	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:36:24,12:24:864:12:432:-28.3841,0,-67.2455	0/1:68:36,32:36:1296:32:1152:-83.5201,0,-96.4739	0/1:105:59,46:59:2105:46:1641:-116.369,0,-157.98	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:37:31,6:31:1112:6:216:-8.6524,0,-89.2532	0/1:23:15,8:15:525:8:288:-19.3437,0,-40.6544	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.653	0/1:25:5,20:5:180:20:720:-57.603,0,-9.01799	0/1:80:38,42:38:1368:42:1508:-111.932,0,-99.3384	0/1:57:30,27:30:1080:27:957:-69.2852,0,-80.3545	0/0:70:70,0:70:2505:0:0:0,-21.0721,-225.701	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:153:153,0:153:5472:0:0:0,-46.0576,-492.606	0/1:42:23,19:23:828:19:676:-48.5247,0,-62.2009	0/1:37:28,9:28:989:9:320:-18.0042,0,-78.1839	.:.:.:.:.:.:.:.	0/1:51:21,30:21:756:30:1067:-80.9887,0,-53.0147	0/1:21:7,14:7:252:14:504:-39.3765,0,-16.7073	0/1:20:12,8:12:432:8:284:-19.8828,0,-33.2006	0/1:37:20,17:20:701:17:597:-42.918,0,-52.2736	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:22:17,5:17:608:5:180:-9.9294,0,-48.4294	0/0:42:42,0:42:1469:0:0:0,-12.6433,-132.5	0/1:49:31,18:31:1097:18:633:-42.5446,0,-84.2875	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	.:.:.:.:.:.:.:.	0/1:63:29,34:29:1040:34:1205:-89.789,0,-74.9495	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:35:13,22:13:453:22:792:-61.0696,0,-30.5636	0/1:81:49,32:49:1752:32:1137:-78.2535,0,-133.581	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:121:58,63:58:2084:63:2253:-166.607,0,-151.405	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.337	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/1:92:60,32:60:2160:32:1114:-72.8683,0,-166.972	0/0:101:101,0:101:3617:0:0:0,-30.404,-325.734	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:92:49,43:49:1741:43:1533:-110.566,0,-129.278	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.641	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:96:96,0:96:3441:0:0:0,-28.8989,-309.901	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/1:40:14,26:14:504:26:917:-70.8034,0,-33.6569	0/1:74:52,22:52:1849:22:792:-49.3295,0,-144.412	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:35:17,18:17:612:18:648:-48.1158,0,-44.8774	0/1:94:53,41:53:1889:41:1476:-104.839,0,-141.99	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:57:24,33:24:864:33:1169:-88.3566,0,-60.9239	0/1:50:12,38:12:428:38:1360:-107.649,0,-23.8073	0/1:36:22,14:22:792:14:504:-34.861,0,-60.7686	0/1:62:40,22:40:1410:22:792:-52.9418,0,-108.529	0/1:53:14,39:14:504:39:1400:-110.345,0,-29.7435	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.514	0/0:96:96,0:96:3433:0:0:0,-28.8989,-309.182
chr10	2646104	.	ACTTA	ACTTG	102928	PASS	AB=0.478583;ABP=18.0786;AC=134;AF=0.728261;AN=184;AO=5128;CIGAR=4M1X;DP=7158;DPB=7158.4;DPRA=11.2261;EPP=11129.6;EPPR=4345.96;GTI=1;LEN=1;MEANALT=1.2967;MQM=59.983;MQMR=59.9925;NS=92;NUMALT=1;ODDS=0.478892;PAIRED=0;PAIREDR=0;PAO=1.5;PQA=45;PQR=0;PRO=0;QA=179491;QR=70602;RO=2000;RPL=1;RPP=11129.6;RPPR=4337.27;RPR=5127;RUN=1;SAF=2;SAP=11121;SAR=5126;SRF=1;SRP=4337.27;SRR=1999;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:19,6:19:678:6:212:-11.899,0,-53.8232	1/1:91:0,91:0:0:91:3189:-287.235,-27.3937,0	0/1:123:68,55:68:2401:55:1933:-137.218,0,-179.322	0/1:147:80,67:80:2778:67:2350:-167.505,0,-206.013	0/1:53:25,28:25:878:28:994:-73.8191,0,-63.3832	0/1:14:9,5:9:322:5:180:-12.3376,0,-25.1098	0/1:69:28,40:28:987:40:1379:-103.572,0,-68.315	0/1:120:73,46:73:2600:46:1612:-109.184,0,-198.068	0/1:78:32,46:32:1120:46:1614:-122.067,0,-77.6268	0/1:73:39,34:39:1386:34:1190:-85.4283,0,-103.064	0/1:50:20,30:20:703:30:1044:-79.2154,0,-48.5428	0/1:74:29,45:29:1035:45:1562:-118.59,0,-71.1882	1/1:74:0,74:0:0:74:2576:-232.088,-22.2762,0	1/1:105:0,105:0:0:105:3641:-327.899,-31.6082,0	1/1:88:0,86:0:0:86:2996:-269.547,-25.8886,0	1/1:56:0,56:0:0:56:1924:-173.432,-16.8577,0	1/1:66:0,66:0:0:66:2311:-208.249,-19.868,0	1/1:46:0,46:0:0:46:1600:-144.287,-13.8474,0	0/1:26:15,11:15:528:11:354:-24.3437,0,-40.0241	0/1:93:56,37:56:1968:37:1307:-89.9349,0,-149.399	0/1:82:43,39:43:1496:39:1379:-99.7235,0,-110.248	0/1:134:99,35:99:3510:35:1194:-67.4197,0,-275.775	1/1:54:1,50:1:36:50:1747:-153.933,-12.1066,0	1/1:85:4,80:4:143:80:2836:-242.137,-12.3765,0	0/1:63:42,21:42:1478:21:744:-48.3194,0,-114.35	1/1:146:0,142:0:0:142:4994:-449.305,-42.7463,0	1/1:132:1,131:1:36:131:4610:-411.468,-36.1377,0	0/1:32:15,17:15:537:17:584:-43.2478,0,-39.0325	0/1:252:148,102:148:5224:102:3571:-246.034,0,-394.742	0/1:116:50,66:50:1767:66:2324:-174.498,0,-124.394	1/1:62:0,62:0:0:62:2180:-196.465,-18.6639,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:21:11,10:11:395:10:347:-25.242,0,-29.5705	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:178:1,177:1:31:177:6146:-550.155,-50.4839,0	0/1:104:51,51:51:1794:51:1792:-130.505,0,-130.688	0/1:54:23,31:23:811:31:1089:-82.0617,0,-57.0555	.:.:.:.:.:.:.:.	0/1:81:44,37:44:1551:37:1281:-90.0113,0,-115.498	0/1:36:14,22:14:489:22:771:-58.8732,0,-33.5034	0/1:124:78,45:78:2749:45:1601:-106.993,0,-210.268	0/1:53:22,31:22:784:31:1095:-82.9045,0,-54.9298	1/1:54:0,54:0:0:54:1879:-169.383,-16.2556,0	0/1:73:40,33:40:1425:33:1146:-81.4665,0,-106.573	1/1:94:0,94:0:0:94:3229:-290.771,-28.2968,0	0/1:191:88,103:88:3096:103:3598:-266.529,0,-221.374	1/1:82:0,82:0:0:82:2850:-256.737,-24.6845,0	1/1:87:0,87:0:0:87:3096:-278.869,-26.1896,0	1/1:123:0,122:0:0:122:4310:-387.868,-36.7257,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:109:45,63:45:1603:63:2203:-165.663,0,-111.69	1/1:30:0,30:0:0:30:1039:-93.8157,-9.0309,0	0/0:22:20,2:20:705:2:57:0,-1.20935,-58.3616	1/1:83:0,83:0:0:83:2872:-258.713,-24.9855,0	0/1:22:14,8:14:495:8:288:-19.6447,0,-38.2614	0/0:7:7,0:7:247:0:0:0,-2.10721,-22.5733	0/1:12:5,7:5:174:7:214:-15.9473,0,-12.3891	0/1:42:24,18:24:845:18:625:-43.9292,0,-63.7249	0/1:106:50,56:50:1771:56:1961:-144.853,0,-127.763	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:167:89,78:89:3109:78:2766:-198.91,0,-229.768	1/1:145:2,143:2:72:143:4979:-441.427,-36.8126,0	1/1:45:0,45:0:0:45:1578:-142.306,-13.5464,0	1/1:61:0,61:0:0:61:2099:-189.174,-18.3628,0	0/1:93:47,45:47:1663:45:1585:-114.884,0,-121.903	1/1:74:1,72:1:36:72:2515:-223.004,-18.7367,0	1/1:25:0,25:0:0:25:871:-78.6478,-7.52575,0	1/1:45:0,45:0:0:45:1578:-142.306,-13.5464,0	1/1:81:0,80:0:0:80:2760:-248.28,-24.0824,0	0/1:16:2,13:2:66:13:468:-37.5844,0,-1.40265	0/1:69:35,34:35:1238:34:1203:-87.804,0,-90.9537	1/1:64:0,64:0:0:64:2233:-201.231,-19.2659,0	1/1:103:1,101:1:36:101:3536:-314.882,-27.4367,0	1/1:202:2,199:2:65:199:6989:-622.921,-54.6357,0	1/1:135:0,135:0:0:135:4791:-431.35,-40.6391,0	1/1:99:0,99:0:0:99:3508:-315.932,-29.802,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:86:0,86:0:0:86:3034:-273.291,-25.8886,0	0/1:95:50,45:50:1774:45:1595:-115.242,0,-131.345	0/1:145:75,70:75:2646:70:2435:-175.756,0,-194.733	1/1:87:0,87:0:0:87:3000:-270.234,-26.1896,0	1/1:70:0,69:0:0:69:2430:-218.585,-20.7711,0	0/1:70:36,34:36:1291:34:1158:-83.447,0,-95.422	0/1:128:59,68:59:2076:68:2389:-176.674,0,-148.521	1/1:46:0,46:0:0:46:1607:-144.916,-13.8474,0	0/1:79:37,42:37:1321:42:1483:-109.982,0,-95.4108	0/1:68:35,33:35:1253:33:1150:-83.3344,0,-92.6055	0/1:47:23,24:23:808:24:835:-61.3181,0,-58.8907	0/1:83:40,43:40:1410:43:1522:-112.286,0,-102.212	0/1:70:32,36:32:1126:36:1279:-94.5828,0,-80.8189	1/1:98:1,96:1:36:96:3389:-301.678,-25.9115,0	1/1:111:0,111:0:0:111:3894:-350.658,-33.4143,0
chr10	2740310	.	G	T	193192	PASS	AB=0.528699;ABP=46.1357;AC=139;AF=0.747312;AN=186;AO=9184;CIGAR=1X;DP=12039;DPB=12039;DPRA=0;EPP=19945.8;EPPR=6198.22;GTI=0;LEN=1;MEANALT=1.02151;MQM=54.0743;MQMR=59.9232;NS=93;NUMALT=1;ODDS=11.8662;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=329021;QR=102077;RO=2853;RPL=0;RPP=19945.8;RPPR=4018.83;RPR=9184;RUN=1;SAF=9184;SAP=19945.8;SAR=0;SRF=2575;SRP=4018.83;SRR=278;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:29,15:29:1036:15:536:-35.0533,0,-80.2802	1/1:222:0,222:0:0:222:7984:-714.625,-66.8287,0	0/1:153:51,102:51:1824:102:3660:-281.133,0,-118.384	0/1:277:141,136:141:5049:136:4886:-355.305,0,-371.167	0/1:64:34,30:34:1216:30:1065:-76.76,0,-90.4806	0/1:109:54,55:54:1932:55:1980:-145.047,0,-141.344	0/1:146:63,83:63:2252:83:2988:-224.923,0,-158.993	0/1:259:124,135:124:4441:135:4840:-355.973,0,-321.892	0/1:82:53,29:53:1908:29:1040:-68.9779,0,-147.313	0/1:140:75,65:75:2684:65:2324:-166.501,0,-198.96	0/1:36:14,22:14:504:22:788:-60.2224,0,-34.861	0/1:51:26,25:26:921:25:900:-64.5161,0,-67.8527	1/1:65:0,65:0:0:65:2336:-208.512,-19.567,0	1/1:72:0,72:0:0:72:2588:-232.317,-21.6742,0	1/1:71:0,71:0:0:71:2529:-227.316,-21.3731,0	1/1:54:0,54:0:0:54:1933:-173.79,-16.2556,0	1/1:67:0,67:0:0:67:2395:-214.973,-20.169,0	1/1:62:0,62:0:0:62:2228:-199.923,-18.6639,0	0/1:23:9,14:9:324:14:500:-38.0715,0,-22.5822	0/1:183:68,115:68:2429:115:4120:-315.358,0,-163.773	0/1:172:92,80:92:3285:80:2859:-205.254,0,-244.091	0/1:158:96,62:96:3456:62:2228:-153.029,0,-263.688	1/1:131:1,130:1:36:130:4641:-412.835,-35.8367,0	1/1:180:7,173:7:248:173:6215:-535.075,-31.5212,0	0/1:73:44,29:44:1565:29:1021:-70.0977,0,-117.888	1/1:470:1,469:1:36:469:16803:-1505.03,-137.886,0	1/1:220:0,220:0:0:220:7865:-705.613,-66.2266,0	0/1:30:14,16:14:500:16:576:-43.0701,0,-36.3053	0/1:305:163,142:163:5840:142:5084:-365.261,0,-433.876	0/1:282:106,176:106:3784:176:6292:-479.571,0,-255.869	1/1:206:0,206:0:0:206:7379:-661.601,-62.0122,0	1/1:15:0,15:0:0:15:540:-48.8671,-4.51545,0	0/1:10:6,4:6:216:4:140:-9.91823,0,-16.7802	1/1:13:0,13:0:0:13:462:-41.4496,-3.91339,0	1/1:15:0,15:0:0:15:536:-48.1564,-4.51545,0	1/1:5:0,5:0:0:5:180:-16.5105,-1.50515,0	1/1:209:2,207:2:72:207:7412:-659.215,-56.0785,0	0/1:373:176,197:176:6305:197:7038:-519.46,0,-455.229	0/1:54:21,33:21:752:33:1180:-89.5876,0,-51.7506	.:.:.:.:.:.:.:.	0/1:193:100,93:100:3581:93:3344:-242.293,0,-264.392	0/1:39:28,11:28:1000:11:392:-23.5578,0,-78.5752	0/1:143:61,82:61:2157:82:2937:-220.732,0,-151.338	0/1:69:29,40:29:1040:40:1432:-108.302,0,-73.1433	1/1:60:0,60:0:0:60:2160:-194.214,-18.0618,0	0/1:144:59,85:59:2116:85:3056:-231.707,0,-147.36	1/1:219:0,219:0:0:219:7869:-705.568,-65.9256,0	0/1:258:101,157:101:3624:157:5632:-426.695,0,-248.699	1/1:141:0,141:0:0:141:5056:-454.26,-42.4452,0	1/1:298:0,297:0:0:297:10636:-955.228,-89.4059,0	1/1:217:0,217:0:0:217:7771:-698.15,-65.3235,0	0/1:14:6,8:6:216:8:288:-22.034,0,-15.5761	0/1:159:61,98:61:2169:98:3505:-266.203,0,-147.565	1/1:65:0,65:0:0:65:2336:-209.761,-19.567,0	0/1:29:11,18:11:396:18:640:-48.9217,0,-27.2447	1/1:149:0,149:0:0:149:5336:-479.355,-44.8535,0	0/1:82:48,34:48:1728:34:1212:-84.4884,0,-131.121	0/1:12:6,6:6:216:6:216:-16.1726,0,-16.1782	0/1:22:14,8:14:504:8:284:-19.2255,0,-39.0754	0/1:208:67,141:67:2412:141:5068:-391.838,0,-154.722	0/1:92:48,44:48:1709:44:1584:-114.799,0,-126.399	1/1:4:0,4:0:0:4:140:-12.9364,-1.20412,0	0/1:264:94,170:94:3342:170:6089:-468.05,0,-220.966	1/1:316:0,316:0:0:316:11321:-1015.29,-95.1255,0	1/1:117:0,117:0:0:117:4196:-376.895,-35.2205,0	1/1:120:0,120:0:0:120:4285:-385.155,-36.1236,0	0/1:226:104,122:104:3702:122:4364:-323.124,0,-265.347	1/1:216:1,215:1:36:215:7720:-688.581,-61.4242,0	1/1:28:0,28:0:0:28:1000:-89.9849,-8.42884,0	1/1:130:0,130:0:0:130:4641:-416.014,-39.1339,0	1/1:110:0,110:0:0:110:3948:-355.343,-33.1133,0	1/1:25:0,25:0:0:25:892:-80.2987,-7.52575,0	0/1:137:74,63:74:2637:63:2260:-160.599,0,-196.326	1/1:47:0,47:0:0:47:1676:-149.843,-14.1484,0	1/1:210:0,210:0:0:210:7500:-672.642,-63.2163,0	1/1:311:0,311:0:0:311:11137:-1000.49,-93.6203,0	1/1:181:0,181:0:0:181:6427:-575.79,-54.4864,0	1/1:169:0,169:0:0:169:6061:-543.238,-50.8741,0	1/1:15:0,15:0:0:15:540:-48.4373,-4.51545,0	1/1:193:0,193:0:0:193:6940:-622.448,-58.0988,0	0/1:157:72,85:72:2588:85:3056:-226.796,0,-185.907	0/1:261:136,125:136:4864:125:4472:-323.28,0,-359.345	1/1:112:0,112:0:0:112:4014:-360.761,-33.7154,0	1/1:51:0,51:0:0:51:1832:-164.768,-15.3525,0	1/1:124:0,123:0:0:123:4416:-395.743,-37.0267,0	0/1:151:67,84:67:2400:84:3016:-225.81,0,-170.801	1/1:48:0,48:0:0:48:1720:-154.187,-14.4494,0	0/1:93:51,42:51:1836:42:1503:-107.077,0,-137.525	0/1:68:30,38:30:1076:38:1368:-102.163,0,-76.6828	0/1:42:28,14:28:1004:14:504:-32.888,0,-78.0326	0/1:66:38,28:38:1368:28:1004:-69.7119,0,-103.553	0/1:75:49,26:49:1741:26:932:-61.5419,0,-134.395	1/1:167:0,167:0:0:167:5984:-535.788,-50.272,0	1/1:91:0,91:0:0:91:3238:-291.136,-27.3937,0
chr10	2740364	.	A	C	192471	PASS	AB=0.553509;ABP=146.161;AC=139;AF=0.747312;AN=186;AO=9189;CIGAR=1X;DP=11775;DPB=11775;DPRA=0;EPP=19956.7;EPPR=5603.24;GTI=0;LEN=1;MEANALT=1.05376;MQM=54.0781;MQMR=59.9283;NS=93;NUMALT=1;ODDS=2.62563;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=327414;QR=92207;RO=2579;RPL=9189;RPP=19956.7;RPPR=5603.24;RPR=0;RUN=1;SAF=9189;SAP=19956.7;SAR=0;SRF=2579;SRP=5603.24;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:23,16:23:824:16:559:-38.6268,0,-62.7431	1/1:221:0,221:0:0:221:7827:-701.003,-66.5276,0	0/1:152:50,102:50:1792:102:3646:-281.006,0,-115.806	0/1:264:128,136:128:4554:136:4853:-356.259,0,-330.551	0/1:62:33,29:33:1180:29:1040:-75.1196,0,-87.8442	0/1:104:50,54:50:1788:54:1940:-142.967,0,-129.895	0/1:141:56,85:56:2012:85:3014:-228.763,0,-138.908	0/1:253:118,135:118:4229:135:4827:-356.623,0,-304.627	0/1:77:47,29:47:1688:29:1027:-69.2643,0,-128.969	0/1:134:70,64:70:2516:64:2270:-163.561,0,-185.426	0/1:36:15,21:15:540:21:748:-56.6942,0,-38.0995	0/1:48:24,24:24:860:24:864:-62.1887,0,-63.2724	1/1:66:0,66:0:0:66:2356:-210.541,-19.868,0	1/1:72:0,72:0:0:72:2564:-230.241,-21.6742,0	1/1:71:0,71:0:0:71:2532:-227.65,-21.3731,0	1/1:55:0,55:0:0:55:1951:-175.407,-16.5567,0	1/1:66:0,66:0:0:66:2347:-210.554,-19.868,0	1/1:63:0,63:0:0:63:2219:-199.276,-18.9649,0	0/1:22:9,13:9:324:13:459:-34.7549,0,-22.8832	0/1:177:62,115:62:2209:115:4085:-314.115,0,-145.791	0/1:167:85,82:85:3032:82:2932:-213.321,0,-222.825	0/1:150:88,62:88:3117:62:2224:-155.079,0,-235.6	1/1:130:1,129:1:32:129:4542:-404.56,-35.9346,0	1/1:176:6,170:6:216:170:6065:-524.641,-33.1908,0	0/1:69:41,28:41:1468:28:1004:-69.7735,0,-111.645	1/1:467:1,466:1:36:466:16590:-1486.08,-136.983,0	1/1:221:0,221:0:0:221:7893:-708.23,-66.5276,0	0/1:29:13,16:13:468:16:572:-43.0123,0,-33.7298	0/1:285:145,140:145:5173:140:5016:-365.136,0,-379.79	0/1:267:95,172:95:3408:172:6139:-470.759,0,-226.559	1/1:208:0,208:0:0:208:7436:-667.225,-62.6142,0	1/1:15:0,15:0:0:15:536:-48.5082,-4.51545,0	0/1:9:6,3:6:216:3:104:-6.9821,0,-17.0812	1/1:12:0,12:0:0:12:432:-39.1226,-3.61236,0	1/1:15:0,15:0:0:15:527:-47.4762,-4.51545,0	1/1:5:0,5:0:0:5:176:-16.1484,-1.50515,0	1/1:206:2,204:2:72:204:7235:-643.593,-55.1755,0	0/1:363:165,198:165:5897:198:7067:-525.064,0,-421.538	0/1:52:19,33:19:684:33:1167:-89.0301,0,-46.2368	.:.:.:.:.:.:.:.	0/1:175:82,93:82:2940:93:3316:-245.264,0,-212.154	0/1:38:27,11:27:968:11:383:-23.0921,0,-75.9982	0/1:137:52,85:52:1853:85:3048:-232.517,0,-125.774	0/1:69:28,41:28:996:41:1464:-111.077,0,-69.1838	1/1:59:0,59:0:0:59:2120:-190.619,-17.7608,0	0/1:136:53,83:53:1893:83:2984:-227.641,0,-129.706	1/1:217:1,216:1:36:216:7723:-688.984,-61.7252,0	0/1:246:90,156:90:3224:156:5566:-425.059,0,-216.329	1/1:143:0,143:0:0:143:5091:-457.461,-43.0473,0	1/1:295:0,293:0:0:293:10474:-940.871,-88.2018,0	1/1:224:0,224:0:0:224:7990:-717.939,-67.4307,0	0/1:13:5,8:5:180:8:288:-22.2669,0,-12.6387	0/1:152:53,99:53:1881:99:3537:-271.273,0,-123.704	1/1:65:0,65:0:0:65:2324:-208.684,-19.567,0	0/1:26:9,17:9:320:17:589:-45.3066,0,-21.3156	1/1:147:0,147:0:0:147:5205:-467.533,-44.2514,0	0/1:82:48,34:48:1720:34:1205:-83.8541,0,-130.401	0/1:10:4,6:4:144:6:216:-16.7747,0,-10.3033	0/1:17:9,8:9:324:8:288:-21.0882,0,-24.3883	0/1:203:62,141:62:2220:141:5048:-391.787,0,-138.955	0/1:89:45,44:45:1616:44:1563:-114.063,0,-118.938	1/1:4:0,4:0:0:4:144:-13.304,-1.20412,0	0/1:253:84,169:84:2985:169:6015:-464.836,0,-192.721	1/1:315:0,315:0:0:315:11264:-1010.52,-94.8245,0	1/1:118:0,118:0:0:118:4191:-376.381,-35.5215,0	1/1:119:0,119:0:0:119:4191:-376.644,-35.8226,0	0/1:209:89,120:89:3192:120:4293:-322.79,0,-224.588	1/1:216:0,216:0:0:216:7698:-690.894,-65.0225,0	1/1:26:0,26:0:0:26:919:-82.7033,-7.82678,0	1/1:133:2,131:2:72:131:4653:-410.049,-33.2003,0	1/1:113:0,113:0:0:113:4012:-361.103,-34.0164,0	1/1:27:0,27:0:0:27:957:-86.1377,-8.12781,0	0/1:130:67,63:67:2392:63:2242:-161.309,0,-176.404	1/1:48:0,48:0:0:48:1711:-152.844,-14.4494,0	1/1:209:0,208:0:0:208:7418:-664.841,-62.6142,0	1/1:315:0,315:0:0:315:11234:-1008.91,-94.8245,0	1/1:180:0,180:0:0:180:6409:-574.385,-54.1854,0	1/1:171:0,171:0:0:171:6095:-546.01,-51.4761,0	1/1:14:0,14:0:0:14:504:-45.2124,-4.21442,0	1/1:195:0,195:0:0:195:6960:-624.289,-58.7009,0	0/1:154:65,89:65:2300:89:3196:-240.192,0,-160.901	0/1:222:97,125:97:3473:125:4473:-335.104,0,-245.951	1/1:114:0,114:0:0:114:4033:-362.476,-34.3174,0	1/1:52:0,52:0:0:52:1847:-166.119,-15.6536,0	1/1:127:0,127:0:0:127:4523:-405.739,-38.2308,0	0/1:157:67,90:67:2412:90:3220:-241.447,0,-170.073	1/1:47:0,47:0:0:47:1684:-150.929,-14.1484,0	0/1:90:49,41:49:1752:41:1463:-104.395,0,-130.871	0/1:67:29,38:29:1036:38:1358:-101.624,0,-73.3849	0/1:44:26,15:26:936:15:531:-34.5545,0,-71.8574	0/1:64:36,28:36:1292:28:978:-68.0866,0,-97.3178	0/1:73:48,25:48:1715:25:887:-58.0976,0,-132.66	1/1:167:0,167:0:0:167:5948:-533.318,-50.272,0	1/1:90:0,90:0:0:90:3156:-283.693,-27.0927,0
chr10	2740458	.	G	C	22604.7	PASS	AB=0.441212;ABP=102.072;AC=48;AF=0.255319;AN=188;AO=1467;CIGAR=1X;DP=6778;DPB=6778;DPRA=0.966066;EPP=3102.29;EPPR=11475;GTI=4;LEN=1;MEANALT=1;MQM=42.7137;MQMR=23.6773;NS=94;NUMALT=1;ODDS=1.83421;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52495;QR=189496;RO=5311;RPL=10;RPP=3102.29;RPPR=11475;RPR=1457;RUN=1;SAF=0;SAP=3188.56;SAR=1467;SRF=0;SRP=11535.7;SRR=5311;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:17,17:17:612:17:603:-42.1306,0,-24.8595	0/0:75:75,0:75:2677:0:0:0,-22.5772,-155.974	0/1:84:39,45:39:1391:45:1612:-116.583,0,-54.8761	0/1:108:65,43:65:2332:43:1532:-101.386,0,-101.559	0/1:31:21,10:21:752:10:356:-22.4624,0,-34.0953	0/1:28:14,14:14:504:14:495:-35.2201,0,-20.5128	0/1:68:26,42:26:932:42:1508:-111.61,0,-34.2453	0/1:90:58,32:58:2066:32:1143:-74.0397,0,-96.6725	0/1:82:55,27:55:1951:27:968:-60.9627,0,-89.4571	0/1:50:32,18:32:1148:18:648:-42.1006,0,-51.2702	0/1:58:27,31:27:972:31:1112:-79.3743,0,-39.5047	0/1:93:42,51:42:1494:51:1832:-131.736,0,-59.5068	0/0:96:96,0:96:3420:0:0:0,-28.8989,-201.164	0/0:49:49,0:49:1749:0:0:0,-14.7505,-104.424	0/0:72:72,0:72:2552:0:0:0,-21.6742,-149.364	0/0:67:67,0:67:2412:0:0:0,-20.169,-140.185	0/0:38:38,0:38:1348:0:0:0,-11.4391,-82.5277	0/0:48:48,0:48:1716:0:0:0,-14.4494,-104.368	0/1:36:15,21:15:527:21:739:-53.8575,0,-21.2089	0/1:105:58,47:58:2076:47:1692:-115.92,0,-89.5186	0/1:63:43,20:43:1544:20:708:-43.8038,0,-70.7005	0/1:70:33,37:33:1175:37:1332:-96.7186,0,-46.5074	0/0:94:94,0:94:3376:0:0:0,-28.2968,-199.176	0/0:36:35,1:35:1260:1:36:0,-7.31607,-68.4911	0/1:78:46,32:46:1640:32:1148:-75.2305,0,-71.2389	0/0:231:231,0:231:8218:0:0:0,-69.5379,-459.658	0/0:218:218,0:218:7785:0:0:0,-65.6245,-454.301	0/1:35:26,9:26:927:9:324:-18.3362,0,-43.0754	0/1:156:68,88:68:2419:88:3156:-232.406,0,-86.4904	0/1:70:33,37:33:1176:37:1319:-93.7796,0,-48.1144	0/0:111:111,0:111:3967:0:0:0,-33.4143,-234.115	0/0:18:18,0:18:635:0:0:0,-5.41854,-37.0061	1/1:8:1,7:1:36:7:252:-20.2556,-0.129374,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-4.32984	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.37353	0/0:15:15,0:15:540:0:0:0,-4.51545,-32.2713	0/0:237:237,0:237:8453:0:0:0,-71.3441,-478.212	0/1:132:86,46:86:3076:46:1656:-106.438,0,-140.297	0/1:49:29,20:29:1044:20:716:-48.6592,0,-46.4842	0/1:3:2,1:2:68:1:36:-2.61792,0,-3.39814	0/1:71:29,42:29:1031:42:1504:-111.584,0,-38.0204	0/1:40:22,18:22:783:18:644:-44.5324,0,-33.1963	0/1:92:38,54:38:1356:54:1932:-142.434,0,-51.5764	0/1:58:32,26:32:1148:26:936:-64.3955,0,-49.646	0/0:41:41,0:41:1420:0:0:0,-12.3422,-83.4218	0/1:74:45,29:45:1616:29:1031:-68.5907,0,-67.4344	0/0:61:61,0:61:2192:0:0:0,-18.3628,-132.006	0/1:104:61,43:61:2183:43:1535:-101.988,0,-93.9771	0/0:89:89,0:89:3183:0:0:0,-26.7917,-183.476	0/0:73:73,0:73:2604:0:0:0,-21.9752,-151.828	0/0:30:30,0:30:1080:0:0:0,-9.0309,-59.4228	0/1:9:7,2:7:252:2:72:-3.87072,0,-11.8755	0/1:98:52,46:52:1868:46:1656:-116.646,0,-80.1498	0/0:62:62,0:62:2215:0:0:0,-18.6639,-122.696	0/1:10:9,1:9:315:1:36:-0.510709,0,-15.5636	0/0:162:162,0:162:5784:0:0:0,-48.7669,-333.215	0/1:24:14,10:14:504:10:360:-24.1862,0,-21.7169	0/1:9:5,4:5:180:4:144:-10.3952,0,-7.33322	0/0:9:9,0:9:324:0:0:0,-2.70927,-17.9018	0/1:66:37,29:37:1304:29:1036:-71.5727,0,-57.4341	0/1:122:59,63:59:2078:63:2241:-160.136,0,-84.059	0/0:3:3,0:3:108:0:0:0,-0.90309,-6.38082	0/1:130:90,40:90:3214:40:1428:-86.3246,0,-138.775	0/0:123:123,0:123:4366:0:0:0,-37.0267,-254.415	0/0:43:43,0:43:1529:0:0:0,-12.9443,-89.4578	0/0:58:58,0:58:2055:0:0:0,-17.4597,-118.995	0/1:71:51,20:51:1815:20:720:-40.2245,0,-86.3346	0/0:125:125,0:125:4462:0:0:0,-37.6287,-258.609	0/0:34:34,0:34:1224:0:0:0,-10.235,-71.1492	0/0:53:53,0:53:1887:0:0:0,-15.9546,-111.542	0/0:52:52,0:52:1849:0:0:0,-15.6536,-103.488	0/0:21:21,0:21:756:0:0:0,-6.32163,-44.4888	0/1:98:60,38:60:2134:38:1347:-89.6602,0,-95.3547	0/0:72:72,0:72:2571:0:0:0,-21.6742,-150.48	0/0:85:85,0:85:3044:0:0:0,-25.5875,-175.794	0/0:133:133,0:133:4749:0:0:0,-40.037,-272.932	0/0:73:73,0:73:2616:0:0:0,-21.9752,-154.622	0/0:75:75,0:75:2684:0:0:0,-22.5772,-157.588	0/0:11:11,0:11:396:0:0:0,-3.31133,-23.9847	0/0:111:109,2:109:3896:2:72:0,-26.7244,-217.741	0/1:95:56,39:56:1990:39:1385:-93.9951,0,-88.2249	0/1:136:104,32:104:3720:32:1148:-60.0313,0,-175.653	0/0:84:84,0:84:2968:0:0:0,-25.2865,-172.137	0/0:80:80,0:80:2868:0:0:0,-24.0824,-166.407	0/0:64:64,0:64:2296:0:0:0,-19.2659,-131.592	0/1:121:75,46:75:2677:46:1652:-108.086,0,-117.392	0/0:30:30,0:30:1067:0:0:0,-9.0309,-62.8067	0/1:56:37,19:37:1310:19:684:-43.7791,0,-61.8864	0/1:60:28,32:28:1004:32:1148:-82.9375,0,-39.8217	0/1:40:20,20:20:720:20:720:-51.2541,0,-29.2063	0/1:127:53,74:53:1882:74:2648:-194.352,0,-70.7605	0/1:66:25,41:25:887:41:1457:-108.179,0,-32.7702	0/0:92:91,1:91:3238:1:36:0,-24.1921,-186.805	0/0:113:113,0:113:4016:0:0:0,-34.0164,-237.076
chr10	2740464	.	CACA	TACC,TACA	91222.6	PASS	AB=0.55775,0.43836;ABP=99.8208,113.302;AC=141,47;AF=0.75,0.25;AN=188;AO=5382,1479;CIGAR=1X2M1X,1X3M;DP=6875;DPB=6875;DPRA=0,1.06955;EPP=10554.9,2959.33;EPPR=9.52472;GTI=2;LEN=4,1;MEANALT=1.67021,2.19231;MQM=23.6512,42.8377;MQMR=57;NS=94;NUMALT=2;ODDS=3.91693;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=190932,52874;QR=108;RO=3;RPL=5248,1449;RPP=10554.9,2959.33;RPPR=9.52472;RPR=134,30;RUN=1,1;SAF=0,0;SAP=11689.9,3214.62;SAR=5382,1479;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:34:0,17,17:0:0:17,17:612,600:-77.3362,-47.6445,-42.5269,-29.977,0,-24.8595	1/1:75:0,75,0:0:0:75,0:2620,0:-155.171,-22.5773,0,-155.171,-22.5773,-155.171	1/2:84:0,40,44:0:0:40,44:1435,1547:-193.284,-123.288,-111.247,-70.2793,0,-57.034	1/2:108:0,65,42:0:0:65,42:2311,1484:-231.212,-117.179,-97.6124,-114.082,0,-101.438	1/2:31:0,21,10:0:0:21,10:755,360:-65.9732,-29.1443,-22.8226,-37.1421,0,-34.1318	1/2:29:0,15,14:0:0:15,14:528,486:-64.8777,-38.7782,-34.2628,-26.3843,0,-22.1699	1/2:69:0,28,40:0:0:28,40:987,1436:-163.72,-113.973,-105.544,-49.7564,0,-37.7152	1/2:91:0,58,33:0:0:58,33:2042,1188:-198.461,-95.1185,-77.6587,-103.651,0,-93.7167	1/2:84:0,56,28:0:0:56,28:1977,1008:-179.696,-80.7665,-63.9088,-99.2412,0,-90.8124	1/2:51:0,32,19:0:0:32,19:1141,680:-110.594,-54.2734,-44.6405,-56.6246,0,-50.905	1/2:60:0,27,33:0:0:27,33:971,1188:-142.096,-93.5492,-85.4214,-48.8318,0,-38.8978	1/2:93:0,42,50:0:0:42,50:1499,1784:-216.379,-141.7,-129.057,-74.6934,0,-59.6419	1/1:95:0,95,0:0:0:95,0:3359,0:-197.819,-28.5979,0,-197.819,-28.5979,-197.819	1/1:49:0,49,0:0:0:49,0:1731,0:-103.672,-14.7505,0,-103.672,-14.7505,-103.672	1/1:73:0,72,0:0:0:72,0:2554,0:-148.428,-21.6742,0,-148.428,-21.6742,-148.428	1/1:69:0,69,0:0:0:69,0:2427,0:-142.885,-20.7711,0,-142.885,-20.7711,-142.885	1/1:38:0,38,0:0:0:38,0:1337,0:-82.1083,-11.4391,0,-82.1083,-11.4391,-82.1083	1/1:48:0,48,0:0:0:48,0:1720,0:-104.549,-14.4494,0,-104.549,-14.4494,-104.549	1/2:38:0,17,21:0:0:17,21:601,748:-90.299,-59.5598,-54.4423,-31.0241,0,-24.7024	1/2:105:0,58,47:0:0:58,47:2079,1676:-236.15,-132.736,-115.276,-103.71,0,-89.5612	1/2:64:0,43,21:0:0:43,21:1539,756:-136.948,-60.5775,-47.6332,-76.6828,0,-70.3612	1/2:69:0,33,36:0:0:33,36:1162,1290:-160.598,-103.363,-93.4295,-57.5211,0,-46.684	1/1:94:0,94,0:0:0:94,0:3315,0:-197.767,-28.2968,0,-197.767,-28.2968,-197.767	1/1:36:0,35,1:0:0:35,1:1246,36:-71.5501,-10.5361,0,-68.6787,-7.31607,-68.3777	1/2:79:0,47,32:0:0:47,32:1653,1135:-172.084,-89.9878,-75.8394,-82.3933,0,-72.7603	1/1:233:0,233,0:0:0:233,0:8258,0:-463.752,-70.14,0,-463.752,-70.14,-463.752	1/1:221:0,220,1:0:0:220,1:7793,36:-456.239,-66.2266,0,-453.301,-62.9294,-453	1/2:38:0,26,12:0:0:26,12:933,432:-80.3345,-34.7666,-26.9399,-45.881,0,-42.2686	1/2:161:0,70,91:0:0:70,91:2487,3276:-378.496,-262.522,-241.45,-116.251,0,-88.8574	1/2:71:0,34,37:0:0:34,37:1172,1313:-164.534,-104.651,-94.4161,-60.1684,0,-49.0303	1/1:111:0,111,0:0:0:111,0:3936,0:-233.348,-33.4143,0,-233.348,-33.4143,-233.348	1/1:18:0,18,0:0:0:18,0:645,0:-37.1311,-5.41854,0,-37.1311,-5.41854,-37.1311	2/2:8:0,1,7:0:0:1,7:36,252:-22.291,-20.5566,-20.2556,-2.10721,-0.129375,0	1/1:2:0,2,0:0:0:2,0:72,0:-4.32984,-0.60206,0,-4.32984,-0.60206,-4.32984	1/1:1:0,1,0:0:0:1,0:36,0:-2.37353,-0.30103,0,-2.37353,-0.30103,-2.37353	1/1:16:0,16,0:0:0:16,0:575,0:-34.3157,-4.81648,0,-34.3157,-4.81648,-34.3157	1/1:241:0,241,0:0:0:241,0:8541,0:-484.75,-72.5482,0,-484.75,-72.5482,-484.75	1/2:133:0,86,47:0:0:86,47:3036,1688:-287.687,-134.941,-109.053,-153.055,0,-138.906	1/2:51:0,29,22:0:0:29,22:1037,792:-115.608,-63.4454,-54.7155,-52.4632,0,-45.8406	1/2:3:0,2,1:0:0:2,1:72,36:-6.63707,-3.21998,-2.61792,-3.72778,0,-3.42675	1/2:74:0,32,42:0:0:32,42:1134,1497:-175.373,-119.655,-110.023,-55.9974,0,-43.3542	1/2:40:0,22,18:0:0:22,18:774,642:-89.5571,-51.2915,-44.6688,-38.5591,0,-33.1406	1/2:92:1,39,52:1:36:39,52:1392,1862:-214.317,-145.229,-136.425,-66.376,0,-53.6615	1/2:60:0,32,27:0:0:32,27:1131,968:-133.357,-76.8549,-67.222,-56.5258,0,-48.398	1/1:41:0,41,0:0:0:41,0:1459,0:-84.2629,-12.3422,0,-84.2629,-12.3422,-84.2629	1/2:74:0,46,28:0:0:46,28:1602,1004:-157.576,-80.714,-66.8667,-77.1642,0,-68.7354	1/1:62:0,62,0:0:0:62,0:2201,0:-132.954,-18.6639,0,-132.954,-18.6639,-132.954	1/2:106:0,61,43:0:0:61,43:2180,1530:-227.859,-121.208,-102.846,-106.688,0,-93.7433	1/1:89:0,88,1:0:0:88,1:3149,34:-180.322,-26.4906,0,-177.833,-23.6926,-177.532	1/1:75:0,75,0:0:0:75,0:2667,0:-155.662,-22.5773,0,-155.662,-22.5773,-155.662	1/1:31:0,31,0:0:0:31,0:1101,0:-61.4315,-9.33193,0,-61.4315,-9.33193,-61.4315	1/2:9:0,7,2:0:0:7,2:246,62:-17.3134,-5.17538,-3.06817,-12.4249,0,-11.8229	1/2:98:0,52,46:0:0:52,46:1847,1656:-225.461,-132.299,-116.646,-93.4581,0,-79.6107	1/1:63:0,63,0:0:0:63,0:2242,0:-124.537,-18.9649,0,-124.537,-18.9649,-124.537	1/1:12:0,11,1:0:0:11,1:388,36:-22.3733,-3.31133,0,-19.495,-0.0913516,-19.194	1/1:162:0,162,0:0:0:162,0:5745,0:-332.961,-48.7669,0,-332.961,-48.7669,-332.961	1/2:24:0,14,10:0:0:14,10:491,354:-52.5271,-28.2154,-24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chr10	2777154	.	G	A	170811	PASS	AB=0.514004;ABP=12.863;AC=140;AF=0.744681;AN=188;AO=8175;CIGAR=1X;DP=10989;DPB=10989;DPRA=0;EPP=17746.1;EPPR=6080.99;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9911;MQMR=60;NS=94;NUMALT=1;ODDS=5.9481;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=291673;QR=100270;RO=2811;RPL=1;RPP=17746.1;RPPR=6080.99;RPR=8174;RUN=1;SAF=8175;SAP=17754.8;SAR=0;SRF=2811;SRP=6107.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:27,28:27:960:28:978:-71.772,0,-70.1596	1/1:117:0,117:0:0:117:4152:-373.861,-35.2205,0	0/1:252:126,126:126:4486:126:4513:-330.476,0,-328.048	0/1:223:99,124:99:3503:124:4433:-332.01,0,-248.349	0/1:79:37,39:37:1332:39:1385:-101.709,0,-96.9443	0/1:49:22,27:22:784:27:972:-73.0474,0,-56.1334	0/1:114:62,52:62:2201:52:1864:-133.722,0,-164.036	0/1:169:64,105:64:2288:105:3772:-288.804,0,-155.308	0/1:101:39,62:39:1389:62:2206:-168.399,0,-94.9029	0/1:77:34,43:34:1190:43:1510:-113.009,0,-84.2217	0/1:110:63,47:63:2222:47:1688:-119.094,0,-167.128	0/1:126:48,78:48:1724:78:2802:-214.489,0,-117.516	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	1/1:136:0,136:0:0:136:4841:-435.842,-40.9401,0	1/1:95:0,95:0:0:95:3401:-306.304,-28.5979,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	0/1:58:29,29:29:1040:29:1044:-76.8151,0,-76.4546	0/1:196:94,102:94:3338:102:3656:-270.241,0,-241.634	0/1:149:88,61:88:3111:61:2188:-152.332,0,-235.361	0/1:116:77,39:77:2772:39:1400:-91.3797,0,-214.801	1/1:125:0,125:0:0:125:4480:-403.368,-37.6288,0	0/1:61:6,55:6:216:55:1946:-157.049,0,-1.42768	0/1:128:56,72:56:1989:72:2550:-191.216,0,-140.751	1/1:254:0,254:0:0:254:9051:-814.563,-76.4616,0	1/1:523:0,523:0:0:523:18376:-1653.43,-157.439,0	0/1:36:19,17:19:669:17:612:-44.5764,0,-49.6969	0/1:374:182,192:182:6517:192:6836:-502.717,0,-474.026	0/1:172:80,92:80:2816:92:3300:-245.441,0,-201.897	1/1:113:0,113:0:0:113:4026:-362.527,-34.0164,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:34:10,24:10:360:24:858:-67.3062,0,-22.5093	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:215:0,215:0:0:215:7652:-688.714,-64.7215,0	0/1:131:70,61:70:2516:61:2181:-157.119,0,-187.257	0/1:69:34,35:34:1220:35:1256:-92.5742,0,-89.3357	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:191:68,123:68:2440:123:4408:-339.395,0,-162.358	0/1:43:23,20:23:824:20:720:-52.1845,0,-61.539	0/1:225:105,120:105:3760:120:4286:-318.183,0,-270.868	0/1:61:34,27:34:1220:27:972:-69.4351,0,-91.744	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	0/1:94:48,46:48:1728:46:1651:-120.582,0,-127.508	1/1:180:0,180:0:0:180:6421:-577.976,-54.1854,0	0/1:172:77,95:77:2760:95:3371:-251.825,0,-196.864	1/1:99:0,99:0:0:99:3548:-319.528,-29.802,0	1/1:204:1,203:1:36:203:7225:-646.702,-57.8118,0	1/1:123:0,123:0:0:123:4412:-397.251,-37.0267,0	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	0/1:220:118,102:118:4214:102:3634:-261.036,0,-313.211	1/1:103:0,103:0:0:103:3670:-330.501,-31.0061,0	0/1:19:8,11:8:288:11:381:-28.9011,0,-20.5478	1/1:181:2,179:2:68:179:6377:-567.56,-48.0287,0	0/1:34:18,16:18:648:16:576:-41.94,0,-48.4169	0/1:21:14,7:14:500:7:233:-14.9727,0,-39.0145	0/1:41:17,24:17:608:24:864:-65.7357,0,-42.7098	0/1:95:63,32:63:2256:32:1109:-71.5148,0,-174.705	0/1:136:69,67:69:2465:67:2408:-176.036,0,-181.162	1/1:6:0,6:0:0:6:197:-18.0513,-1.80618,0	0/1:182:80,102:80:2831:102:3653:-274.185,0,-200.237	1/1:214:0,214:0:0:214:7660:-689.433,-64.4204,0	1/1:97:0,97:0:0:97:3447:-310.439,-29.1999,0	1/1:158:0,158:0:0:158:5676:-510.957,-47.5627,0	0/1:156:55,101:55:1961:101:3572:-274.723,0,-129.803	1/1:228:0,228:0:0:228:8145:-733.062,-68.6348,0	1/1:90:0,90:0:0:90:3218:-289.841,-27.0927,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:59:0,59:0:0:59:2105:-189.717,-17.7608,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:156:89,67:89:3181:67:2397:-169.012,0,-239.552	1/1:109:0,109:0:0:109:3890:-350.291,-32.8123,0	1/1:118:0,118:0:0:118:4216:-379.621,-35.5215,0	1/1:191:0,191:0:0:191:6845:-616.117,-57.4967,0	1/1:182:0,182:0:0:182:6475:-582.835,-54.7875,0	1/1:159:0,159:0:0:159:5652:-508.798,-47.8638,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:105:0,105:0:0:105:3755:-338.15,-31.6082,0	0/1:126:60,66:60:2114:66:2353:-174.097,0,-152.596	0/1:250:136,114:136:4838:114:4065:-290.779,0,-360.316	1/1:57:0,57:0:0:57:2052:-184.523,-17.1587,0	1/1:114:0,114:0:0:114:4070:-366.485,-34.3174,0	1/1:40:0,40:0:0:40:1408:-127.013,-12.0412,0	0/1:136:70,66:70:2512:66:2376:-173.157,0,-185.392	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:88:58,30:58:2069:30:1080:-71.0226,0,-159.988	0/1:93:51,42:51:1836:42:1512:-108.379,0,-137.525	0/1:103:63,40:63:2253:40:1425:-97.5394,0,-172.025	0/1:182:76,106:76:2728:106:3805:-287.859,0,-190.975	0/1:67:39,28:39:1381:28:1004:-70.5069,0,-104.418	1/1:214:0,214:0:0:214:7612:-685.117,-64.4204,0	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0
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chr10	2800903	.	A	G	127949	PASS	AB=0.809604;ABP=1979.56;AC=142;AF=0.763441;AN=186;AO=5865;CIGAR=1X;DP=6343;DPB=6343;DPRA=46.4469;EPP=12513.9;EPPR=1004.22;GTI=21;LEN=1;MEANALT=1.05495;MQM=59.9245;MQMR=60;NS=93;NUMALT=1;ODDS=0.701905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209201;QR=16953;RO=473;RPL=5846;RPP=12574.2;RPPR=1004.22;RPR=19;RUN=1;SAF=7;SAP=12678;SAR=5858;SRF=0;SRP=1030.12;SRR=473;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:8,32:8:284:32:1148:-90.6465,0,-13.8622	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/1:97:12,85:12:428:85:3028:-243.42,0,-9.6589	0/1:112:11,101:11:392:101:3611:-291.48,0,-1.9047	0/1:42:11,31:11:396:31:1103:-86.9365,0,-23.3395	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	0/1:32:14,18:14:500:18:648:-49.0189,0,-35.7032	0/1:103:19,84:19:684:84:2995:-238.068,0,-30.8842	0/1:54:10,44:10:360:44:1558:-124.251,0,-16.4887	0/1:64:10,54:10:360:54:1931:-154.8,0,-13.4784	1/1:29:2,27:2:72:27:972:-80.9612,-1.89315,0	0/1:72:13,59:13:468:59:2111:-168.584,0,-20.7855	1/1:89:0,89:0:0:89:3174:-285.884,-26.7917,0	1/1:62:0,62:0:0:62:2192:-197.546,-18.6639,0	1/1:68:1,67:1:27:67:2400:-213.557,-17.7703,0	1/1:66:0,66:0:0:66:2342:-211.039,-19.868,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:16:3,13:3:108:13:468:-37.6432,0,-5.25869	0/1:71:12,59:12:432:59:2108:-168.614,0,-17.8481	1/1:111:7,104:7:248:104:3689:-309.462,-10.7501,0	0/1:35:11,24:11:396:24:856:-66.8251,0,-25.4467	1/1:85:0,85:0:0:85:3036:-273.465,-25.5876,0	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	0/1:58:11,47:11:392:47:1672:-133.306,0,-18.1603	1/1:203:0,203:0:0:203:7245:-652.102,-61.1091,0	1/1:297:1,295:1:36:295:10519:-943.025,-85.8664,0	0/1:16:2,14:2:72:14:500:-40.5197,0,-2.02024	0/1:151:19,132:19:684:132:4706:-378.243,0,-16.4348	0/1:47:14,33:14:504:33:1184:-92.7199,0,-31.5497	1/1:62:0,62:0:0:62:2203:-198.535,-18.6639,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:207:0,207:0:0:207:7371:-663.413,-62.3132,0	0/1:71:29,42:29:1029:42:1491:-113.111,0,-71.548	0/1:26:6,20:6:216:20:720:-57.3016,0,-11.9637	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:49:11,38:11:381:38:1368:-108.67,0,-19.8702	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:106:13,93:13:468:93:3306:-265.85,0,-10.5505	1/1:47:3,44:3:108:44:1572:-131.696,-4.07324,0	1/1:51:0,51:0:0:51:1761:-158.768,-15.3525,0	0/1:59:8,51:8:288:51:1820:-146.32,0,-8.50664	1/1:145:0,145:0:0:145:5157:-464.273,-43.6494,0	0/1:147:20,127:20:720:127:4549:-365.321,0,-20.8774	1/1:105:0,105:0:0:105:3750:-337.699,-31.6082,0	1/1:121:0,121:0:0:121:4309:-387.987,-36.4246,0	1/1:104:1,103:1:36:103:3668:-326.727,-27.7088,0	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:58:19,39:19:684:39:1392:-108.119,0,-44.4306	1/1:19:0,19:0:0:19:670:-60.6235,-5.71957,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:70:0,70:0:0:70:2491:-224.443,-21.0721,0	1/1:36:1,35:1:36:35:1260:-110.107,-7.23881,0	.:.:.:.:.:.:.:.	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:45:7,38:7:252:38:1356:-108.794,0,-9.48261	0/1:69:26,42:26:936:42:1504:-114.825,0,-63.7296	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:92:17,75:17:612:75:2651:-211.142,0,-27.7187	1/1:148:0,148:0:0:148:5260:-473.494,-44.5524,0	1/1:83:0,83:0:0:83:2975:-267.982,-24.9855,0	1/1:59:0,59:0:0:59:2107:-189.896,-17.7608,0	0/1:117:19,97:19:684:97:3453:-275.85,0,-26.7537	1/1:190:2,188:2:72:188:6700:-595.998,-50.359,0	1/1:48:0,48:0:0:48:1690:-152.385,-14.4494,0	1/1:55:0,55:0:0:55:1951:-175.863,-16.5567,0	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:50:11,39:11:396:39:1404:-111.604,0,-20.9312	1/1:66:0,66:0:0:66:2368:-213.37,-19.868,0	1/1:109:0,109:0:0:109:3860:-347.559,-32.8123,0	1/1:155:0,155:0:0:155:5564:-500.882,-46.6597,0	1/1:112:0,112:0:0:112:3998:-360.009,-33.7154,0	1/1:68:0,68:0:0:68:2440:-219.847,-20.47,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:89:0,88:0:0:88:3131:-281.657,-26.4906,0	0/1:72:7,65:7:252:65:2307:-186.217,0,-1.3548	0/1:113:14,99:14:504:99:3534:-284.252,0,-11.6817	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:78:0,78:0:0:78:2795:-251.519,-23.4803,0	1/1:51:0,51:0:0:51:1815:-163.631,-15.3525,0	0/1:84:15,69:15:536:69:2476:-197.779,0,-23.2883	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:60:11,49:11:396:49:1756:-140.262,0,-17.9209	1/1:35:3,32:3:108:32:1144:-93.1943,-0.46088,0	0/1:26:6,19:6:216:19:675:-53.1916,0,-11.9049	0/1:45:10,35:10:356:35:1248:-99.0785,0,-18.8349	0/1:27:7,20:7:248:20:716:-56.6399,0,-14.5364	1/1:141:0,141:0:0:141:5047:-454.374,-42.4452,0	1/1:119:0,119:0:0:119:4243:-382.05,-35.8226,0
chr10	2801894	.	G	A	17443.1	PASS	AB=0.523195;ABP=12.7814;AC=46;AF=0.244681;AN=188;AO=1099;CIGAR=1X;DP=3681;DPB=3681;DPRA=1.48971;EPP=2389.46;EPPR=5607.58;GTI=3;LEN=1;MEANALT=1.02083;MQM=47.849;MQMR=59.974;NS=94;NUMALT=1;ODDS=0.517902;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38719;QR=91128;RO=2581;RPL=0;RPP=2389.46;RPPR=5607.58;RPR=1099;RUN=1;SAF=0;SAP=2389.46;SAR=1099;SRF=0;SRP=5607.58;SRR=2581;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:23,13:23:828:13:464:-29.8121,0,-64.007	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.459	0/1:66:32,34:32:1112:34:1212:-87.4856,0,-80.5163	0/1:98:45,53:45:1573:53:1875:-138.533,0,-112.357	0/1:42:28,14:28:988:14:500:-32.1311,0,-76.5906	0/1:30:16,14:16:563:14:500:-35.3868,0,-41.9683	0/1:50:24,26:24:864:26:901:-66.0179,0,-63.0311	0/1:45:31,14:31:1104:14:479:-29.4061,0,-85.6332	0/1:36:8,28:8:288:28:987:-76.619,0,-15.4303	0/1:24:13,11:13:468:11:396:-27.434,0,-35.2349	0/1:12:3,9:3:99:9:316:-25.0521,0,-5.62422	0/1:12:5,7:5:180:7:252:-18.6222,0,-12.9397	0/0:15:15,0:15:514:0:0:0,-4.51545,-46.5835	0/0:18:18,0:18:626:0:0:0,-5.41854,-56.6633	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:7:3,4:3:108:4:140:-10.1551,0,-7.96796	0/1:103:46,57:46:1603:57:2020:-149.712,0,-113.55	0/1:33:19,14:19:666:14:492:-34.3295,0,-50.3296	0/1:104:38,65:38:1349:65:2289:-174.008,0,-90.3434	0/0:35:35,0:35:1235:0:0:0,-10.536,-111.453	0/0:63:59,4:59:2104:4:140:0,-6.11948,-176.78	0/1:44:21,23:21:740:23:812:-58.3497,0,-53.678	0/0:136:136,0:136:4788:0:0:0,-40.9401,-431.078	0/0:74:74,0:74:2621:0:0:0,-22.2762,-236.137	0/1:6:1,5:1:36:5:172:-13.8943,0,-1.79209	0/1:165:79,86:79:2781:86:3053:-223.509,0,-200.859	0/1:69:35,34:35:1244:34:1172:-83.7763,0,-91.4936	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:15:9,6:9:305:6:212:-14.7534,0,-23.2618	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.218	0/1:99:53,46:53:1839:46:1614:-113.281,0,-135.985	0/1:15:7,8:7:248:8:288:-21.4748,0,-18.1487	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:76:22,54:22:771:54:1928:-148.288,0,-46.832	0/1:7:1,6:1:36:6:212:-17.0861,0,-1.49106	0/1:70:43,27:43:1536:27:949:-63.4527,0,-117.461	0/1:13:3,10:3:108:10:356:-28.0833,0,-6.16178	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:64:20,44:20:720:44:1527:-117.776,0,-45.8629	0/0:73:73,0:73:2558:0:0:0,-21.9752,-230.469	0/1:66:40,26:40:1414:26:911:-61.8568,0,-107.688	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/0:94:94,0:94:3343:0:0:0,-28.2968,-301.086	0/1:8:7,1:7:248:1:36:-1.17481,0,-20.256	0/1:73:35,38:35:1236:38:1337:-97.0711,0,-89.5691	0/0:31:31,0:31:1063:0:0:0,-9.33193,-95.9735	0/1:5:2,3:2:72:3:108:-8.43069,0,-5.33157	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/1:8:5,3:5:180:3:104:-6.81648,0,-14.1438	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:13:10,3:10:360:3:108:-6.13068,0,-28.8309	0/1:37:18,19:18:632:19:654:-47.3835,0,-46.0686	0/1:52:18,34:18:648:34:1204:-90.9202,0,-42.9983	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:87:50,37:50:1775:37:1303:-91.1022,0,-133.843	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.651	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/0:47:47,0:47:1652:0:0:0,-14.1484,-148.965	0/1:63:24,39:24:842:39:1388:-105.012,0,-57.1322	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.742	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:66:18,48:18:626:48:1678:-128.404,0,-36.7953	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:86:85,1:85:3016:1:36:0,-22.2903,-268.072	0/0:67:67,0:67:2379:0:0:0,-20.169,-214.368	0/0:84:84,0:84:2953:0:0:0,-25.2865,-266.005	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:10:10,0:10:309:0:0:0,-3.0103,-28.1105	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/1:52:31,21:31:1099:21:748:-50.5894,0,-83.5659	0/1:97:53,44:53:1868:44:1545:-109.298,0,-139.197	0/0:38:38,0:38:1300:0:0:0,-11.4391,-117.166	0/0:15:15,0:15:511:0:0:0,-4.51545,-46.3133	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:27:11,16:11:396:16:552:-41.4209,0,-27.8549	0/0:21:21,0:21:734:0:0:0,-6.32163,-66.3804	0/1:24:13,11:13:451:11:384:-27.252,0,-33.6951	0/1:18:7,11:7:248:11:370:-27.8431,0,-17.2457	0/1:9:5,4:5:172:4:144:-8.9383,0,-13.1087	0/1:26:10,16:10:360:16:563:-42.6383,0,-24.9175	0/1:19:11,8:11:380:8:288:-20.4358,0,-28.8124	0/0:50:50,0:50:1754:0:0:0,-15.0515,-158.142	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282
chr10	2812428	.	A	G	23216.1	PASS	AB=0.508431;ABP=4.69462;AC=48;AF=0.258065;AN=186;AO=1406;CIGAR=1X;DP=5331;DPB=5331;DPRA=1.21483;EPP=3021.46;EPPR=8417.78;GTI=1;LEN=1;MEANALT=1.03571;MQM=59.9993;MQMR=59.986;NS=93;NUMALT=1;ODDS=0.695595;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49792;QR=140158;RO=3923;RPL=4;RPP=3021.46;RPPR=8400.53;RPR=1402;RUN=1;SAF=0;SAP=3056.1;SAR=1406;SRF=2;SRP=8504.33;SRR=3921;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:20,4:20:720:4:144:-6.0889,0,-57.9041	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.802	0/1:58:27,31:27:944:31:1103:-82.1201,0,-67.8116	0/1:121:52,69:52:1864:69:2452:-184.508,0,-131.615	0/1:21:16,5:16:568:5:165:-8.85197,0,-45.1302	0/1:19:7,12:7:252:12:428:-33.1392,0,-17.3094	0/1:59:29,30:29:1036:30:1072:-79.0317,0,-75.7931	0/1:67:22,45:22:788:45:1616:-125.561,0,-51.0758	0/1:50:20,30:20:720:30:1056:-80.2966,0,-50.0773	0/1:29:17,12:17:612:12:428:-30.1289,0,-46.6836	0/1:85:46,39:46:1648:39:1373:-98.2788,0,-123.019	0/1:58:37,21:37:1320:21:715:-47.2041,0,-101.642	0/0:59:59,0:59:2094:0:0:0,-17.7608,-188.729	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/0:52:52,0:52:1850:0:0:0,-15.6536,-166.779	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/0:27:27,0:27:952:0:0:0,-8.12781,-85.9952	0/1:42:15,27:15:540:27:968:-74.7941,0,-36.2933	0/1:69:30,39:30:1080:39:1391:-104.717,0,-76.7422	0/1:99:52,47:52:1855:47:1654:-119.342,0,-137.427	0/1:28:12,16:12:428:16:576:-43.7461,0,-30.43	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:65:64,1:64:2287:1:36:0,-15.9687,-202.493	0/1:23:17,6:17:603:6:216:-12.8668,0,-47.6758	0/0:119:118,1:118:4207:1:36:0,-32.2243,-375.214	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/1:38:18,20:18:640:20:705:-52.3336,0,-46.4902	0/1:158:76,82:76:2724:82:2895:-213.223,0,-197.84	0/1:73:39,34:39:1391:34:1216:-87.7714,0,-103.508	0/0:59:58,1:58:2075:1:36:0,-14.1625,-183.422	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:146:145,1:145:5158:1:36:0,-40.3521,-460.762	0/1:88:34,54:34:1224:54:1927:-147.215,0,-83.9764	0/1:64:26,38:26:927:38:1364:-103.795,0,-64.4814	.:.:.:.:.:.:.:.	0/1:63:25,38:25:891:38:1355:-103.285,0,-61.5439	0/1:32:14,18:14:504:18:639:-48.2053,0,-36.0651	0/1:74:50,24:50:1800:24:856:-55.0849,0,-140.006	0/1:89:38,51:38:1364:51:1813:-136.658,0,-96.269	0/0:62:61,1:61:2184:1:36:0,-15.0656,-193.228	0/1:33:27,6:27:968:6:216:-9.85652,0,-77.5034	0/0:65:63,2:63:2268:2:57:0,-14.1536,-198.969	0/1:89:51,37:51:1824:37:1311:-91.4406,0,-137.591	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:81:81,0:81:2903:0:0:0,-24.3834,-261.505	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.384	1/1:3:0,3:0:0:3:97:-9.04999,-0.90309,0	0/1:61:28,33:28:996:33:1188:-88.8658,0,-71.5921	0/0:47:46,1:46:1652:1:36:0,-10.5501,-145.37	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.458	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:39:24,15:24:851:15:527:-36.02,0,-65.1693	0/1:113:50,62:50:1787:62:2187:-163.018,0,-127.037	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:86:39,47:39:1395:47:1680:-125.599,0,-99.9598	0/0:67:67,0:67:2384:0:0:0,-20.169,-214.815	0/0:32:32,0:32:1134:0:0:0,-9.63296,-102.367	0/0:37:36,1:36:1288:1:36:0,-7.53983,-112.625	0/1:77:53,24:53:1899:24:849:-53.5485,0,-148.008	0/0:66:66,0:66:2337:0:0:0,-19.868,-210.589	0/0:48:48,0:48:1700:0:0:0,-14.4494,-153.283	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:43:25,18:25:870:18:627:-43.8101,0,-65.6677	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:145:145,0:145:5203:0:0:0,-43.6493,-468.407	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.824	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:41:40,1:40:1412:1:36:0,-8.74395,-123.776	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:64:64,0:64:2271:0:0:0,-19.2659,-204.65	0/1:42:19,23:19:680:23:824:-61.8401,0,-48.8859	0/1:72:24,48:24:860:48:1715:-132.961,0,-56.0477	0/0:76:75,1:75:2692:1:36:0,-19.28,-238.926	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/0:80:80,0:80:2854:0:0:0,-24.0824,-257.097	0/1:177:92,85:92:3291:85:2989:-215.959,0,-243.124	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:55:22,33:22:792:33:1149:-87.1545,0,-55.049	0/1:71:44,27:44:1575:27:926:-62.2743,0,-120.668	0/1:46:20,26:20:697:26:923:-69.54,0,-49.2033	0/1:99:48,51:48:1711:51:1778:-130.497,0,-124.473	0/1:66:22,44:22:788:44:1546:-119.56,0,-51.3768	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.072	0/0:108:108,0:108:3843:0:0:0,-32.5112,-346.065
chr10	2812461	.	T	C	81733	PASS	AB=0.489685;ABP=5.56373;AC=138;AF=0.741935;AN=186;AO=3947;CIGAR=1X;DP=5372;DPB=5372;DPRA=14.7363;EPP=8573.81;EPPR=3095.19;GTI=2;LEN=1;MEANALT=1.01099;MQM=59.9866;MQMR=59.981;NS=93;NUMALT=1;ODDS=1.5719;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140432;QR=50953;RO=1424;RPL=3947;RPP=8573.81;RPPR=3095.19;RPR=0;RUN=1;SAF=0;SAP=8573.81;SAR=3947;SRF=0;SRP=3095.19;SRR=1424;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:3,20:3:108:20:716:-57.844,0,-3.15148	1/1:45:1,44:1:21:44:1553:-137.96,-11.4464,0	0/1:58:32,26:32:1152:26:921:-65.7455,0,-86.5304	0/1:122:69,53:69:2484:53:1867:-131.58,0,-187.087	0/1:21:6,15:6:201:15:532:-41.8915,0,-12.0954	0/1:17:13,4:13:464:4:144:-8.19611,0,-36.98	0/1:60:29,31:29:1028:31:1089:-80.2555,0,-74.7712	0/1:72:46,26:46:1641:26:897:-59.3653,0,-126.302	0/1:48:30,18:30:1076:18:644:-43.8412,0,-82.7034	0/1:29:12,17:12:432:17:608:-46.3222,0,-30.4913	0/1:84:40,44:40:1440:44:1561:-115.493,0,-104.611	0/1:60:22,38:22:788:38:1368:-105.359,0,-53.183	1/1:60:0,59:0:0:59:2115:-190.259,-17.7608,0	1/1:100:0,100:0:0:100:3580:-322.407,-30.103,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:48:0,48:0:0:48:1664:-150.04,-14.4494,0	1/1:29:0,29:0:0:29:1006:-90.8466,-8.72987,0	0/1:42:27,15:27:968:15:540:-36.2933,0,-74.7941	0/1:69:39,30:39:1400:30:1076:-76.3818,0,-105.528	0/1:103:49,54:49:1752:54:1901:-140.36,0,-126.958	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3825	1/1:48:0,48:0:0:48:1711:-154.274,-14.4494,0	1/1:64:1,63:1:36:63:2259:-199.974,-15.6676,0	0/1:22:5,17:5:180:17:612:-48.7908,0,-9.9294	1/1:120:1,119:1:36:119:4226:-376.921,-32.5253,0	1/1:91:0,91:0:0:91:3256:-293.261,-27.3937,0	0/1:38:20,18:20:720:18:648:-47.2127,0,-53.6896	0/1:163:86,77:86:3065:77:2730:-196.873,0,-226.64	0/1:77:35,42:35:1252:42:1500:-112.114,0,-89.8058	1/1:59:1,58:1:36:58:2028:-179.191,-14.1625,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:147:0,147:0:0:147:5242:-471.916,-44.2514,0	0/1:89:54,35:54:1917:35:1256:-86.5536,0,-146.014	0/1:65:38,27:38:1368:27:964:-67.5099,0,-103.854	.:.:.:.:.:.:.:.	0/1:64:38,26:38:1368:26:936:-65.2935,0,-104.155	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/1:73:24,49:24:864:49:1752:-135.989,0,-56.1074	0/1:93:54,39:54:1944:39:1368:-95.4195,0,-147.24	1/1:62:0,62:0:0:62:2201:-198.354,-18.6639,0	0/1:32:6,26:6:216:26:928:-74.2053,0,-10.1576	1/1:66:0,66:0:0:66:2352:-211.938,-19.868,0	0/1:86:38,48:38:1364:48:1720:-129.197,0,-97.1721	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:84:0,84:0:0:84:3000:-270.232,-25.2865,0	1/1:61:0,61:0:0:61:2173:-195.835,-18.3628,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:62:33,29:33:1180:29:1014:-72.9036,0,-87.8442	1/1:47:0,47:0:0:47:1651:-148.873,-14.1484,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:72:0,72:0:0:72:2557:-230.38,-21.6742,0	0/1:17:8,9:8:284:9:324:-24.3883,0,-20.7858	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:39:15,24:15:536:24:860:-65.9817,0,-36.8346	0/1:112:62,50:62:2213:50:1776:-126.405,0,-165.718	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:90:48,42:48:1712:42:1481:-106.49,0,-127.273	1/1:66:0,66:0:0:66:2342:-211.036,-19.868,0	1/1:33:0,33:0:0:33:1165:-105.155,-9.93399,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:79:25,54:25:892:54:1913:-148.663,0,-56.8183	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	0/1:42:15,27:15:540:27:972:-75.1546,0,-36.2933	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:150:0,150:0:0:150:5327:-479.563,-45.1545,0	1/1:88:0,88:0:0:88:3125:-281.477,-26.4906,0	1/1:42:0,42:0:0:42:1478:-133.31,-12.6433,0	1/1:42:1,41:1:36:41:1468:-128.818,-9.04499,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	0/1:42:23,19:23:828:19:684:-49.2471,0,-62.2009	0/1:74:51,23:51:1820:23:820:-51.8463,0,-141.805	1/1:74:1,73:1:36:73:2624:-232.809,-18.6779,0	1/1:63:0,63:0:0:63:2253:-203.031,-18.9649,0	1/1:83:0,83:0:0:83:2948:-265.553,-24.9855,0	0/1:180:86,94:86:3062:94:3342:-246.804,0,-221.621	1/1:36:0,36:0:0:36:1281:-115.591,-10.8371,0	0/1:55:33,22:33:1188:22:788:-54.6881,0,-90.6719	0/1:70:27,43:27:972:43:1544:-118.181,0,-66.7258	0/1:48:27,21:27:968:21:737:-52.2012,0,-72.9879	0/1:103:54,49:54:1921:49:1729:-124.886,0,-142.159	0/1:67:45,22:45:1608:22:762:-48.726,0,-124.841	1/1:92:0,92:0:0:92:3287:-295.422,-27.6948,0	1/1:107:0,107:0:0:107:3817:-343.727,-32.2102,0
chr10	2826207	.	T	C	77203.1	PASS	AB=0.445003;ABP=91.8622;AC=139;AF=0.739362;AN=188;AO=3842;CIGAR=1X;DP=5740;DPB=5740;DPRA=8.80645;EPP=8319.77;EPPR=4104.93;GTI=3;LEN=1;MEANALT=1.04301;MQM=59.9865;MQMR=60;NS=94;NUMALT=1;ODDS=0.879152;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136551;QR=66601;RO=1893;RPL=3;RPP=8319.77;RPPR=4104.93;RPR=3839;RUN=1;SAF=0;SAP=8345.81;SAR=3842;SRF=0;SRP=4113.61;SRR=1893;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:24,26:24:852:26:925:-68.5145,0,-61.9489	1/1:34:1,33:1:32:33:1184:-103.669,-7.03571,0	0/1:95:39,56:39:1396:56:2012:-152.755,0,-97.3412	0/1:163:113,50:113:4012:50:1752:-108.894,0,-312.205	0/1:86:41,45:41:1432:45:1616:-119.841,0,-103.287	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	0/1:34:17,17:17:593:17:599:-44.0031,0,-43.4597	0/1:95:60,35:60:2095:35:1244:-83.6668,0,-160.222	0/1:71:36,35:36:1268:35:1252:-91.6119,0,-93.0496	0/1:45:20,24:20:704:24:855:-63.6652,0,-50.0798	0/1:29:13,16:13:452:16:572:-43.0836,0,-32.2812	0/1:64:27,37:27:947:37:1324:-100.196,0,-66.2778	1/1:57:0,57:0:0:57:1999:-180.181,-17.1587,0	1/1:23:0,23:0:0:23:800:-72.3158,-6.92369,0	1/1:54:0,54:0:0:54:1908:-171.995,-16.2556,0	1/1:60:0,60:0:0:60:2126:-191.607,-18.0618,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:140:93,47:93:3268:47:1656:-107.181,0,-252.199	0/1:118:68,50:68:2380:50:1788:-125.681,0,-178.939	0/1:142:112,30:112:3946:30:1068:-53.6858,0,-312.591	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:36:2,34:2:72:34:1220:-103.27,-4.00036,0	0/1:68:35,33:35:1225:33:1163:-84.5034,0,-90.0816	1/1:199:2,197:2:72:197:6996:-622.868,-53.0682,0	1/1:128:0,128:0:0:128:4573:-411.735,-38.5318,0	0/1:16:5,11:5:172:11:379:-29.6241,0,-11.0015	0/1:189:119,70:119:4208:70:2476:-166.197,0,-322.009	0/1:84:45,39:45:1579:39:1384:-99.5723,0,-117.113	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:27:16,11:16:552:11:388:-27.1296,0,-41.8778	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:25:0,25:0:0:25:886:-80.0578,-7.52575,0	1/1:27:0,27:0:0:27:963:-86.9859,-8.12781,0	1/1:127:1,126:1:36:126:4488:-400.492,-34.6325,0	0/1:144:82,62:82:2871:62:2207:-155.542,0,-215.283	0/1:25:11,14:11:396:14:482:-36.1803,0,-28.457	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:52:33,19:33:1164:19:676:-45.5144,0,-89.4134	0/1:24:10,14:10:352:14:485:-36.7523,0,-24.7935	0/1:105:47,58:47:1651:58:2062:-154.241,0,-117.269	0/1:30:13,17:13:460:17:608:-46.0211,0,-32.7045	1/1:36:0,36:0:0:36:1262:-113.881,-10.8371,0	0/1:106:61,45:61:2164:45:1604:-112.741,0,-163.118	1/1:57:0,57:0:0:57:2046:-184.412,-17.1587,0	0/1:95:49,46:49:1717:46:1633:-118.66,0,-126.215	1/1:55:0,55:0:0:55:1927:-173.704,-16.5567,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:96:54,42:54:1904:42:1488:-105.313,0,-142.739	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:8:7,1:7:235:1:36:-1.19004,0,-19.0697	1/1:95:0,94:0:0:94:3344:-300.819,-28.2968,0	0/1:37:31,6:31:1080:6:212:-8.28669,0,-86.3704	0/1:17:10,7:10:352:7:252:-17.9114,0,-26.9007	0/1:16:13,3:13:460:3:108:-5.25869,0,-36.9189	0/1:66:39,27:39:1367:27:954:-66.3066,0,-103.46	0/1:84:34,50:34:1161:50:1792:-136.276,0,-79.5018	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:100:50,50:50:1757:50:1783:-130.649,0,-128.309	1/1:128:0,128:0:0:128:4567:-411.197,-38.5318,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:144:79,65:79:2756:65:2294:-163.37,0,-204.936	1/1:101:2,99:2:68:99:3521:-310.642,-23.9463,0	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	1/1:29:0,29:0:0:29:1023:-92.3807,-8.72987,0	1/1:31:0,31:0:0:31:1104:-99.6701,-9.33193,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:119:60,59:60:2132:59:2103:-153.716,0,-156.326	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:70:2,68:2:72:68:2397:-209.15,-14.2354,0	1/1:79:0,79:0:0:79:2818:-253.858,-23.7814,0	1/1:81:0,81:0:0:81:2885:-259.887,-24.3834,0	1/1:44:0,44:0:0:44:1555:-140.241,-13.2453,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	0/1:93:50,43:50:1767:43:1528:-109.817,0,-131.317	0/1:137:76,61:76:2688:61:2157:-153.155,0,-200.926	1/1:51:0,50:0:0:50:1782:-160.312,-15.0515,0	1/1:33:0,31:0:0:31:1104:-99.3115,-9.33193,0	1/1:34:0,34:0:0:34:1204:-108.664,-10.235,0	0/1:92:40,52:40:1403:52:1823:-136.653,0,-98.8716	1/1:17:0,17:0:0:17:594:-53.7856,-5.11751,0	0/1:48:22,26:22:762:26:913:-68.0346,0,-54.4481	0/1:50:25,25:25:896:25:855:-62.2086,0,-65.9089	0/1:24:13,11:13:468:11:381:-27.3959,0,-35.2349	0/1:63:27,36:27:951:36:1288:-97.2587,0,-66.9394	0/1:47:31,16:31:1078:16:576:-38.0266,0,-83.1784	1/1:60:0,60:0:0:60:2129:-191.877,-18.0618,0	1/1:54:0,54:0:0:54:1917:-172.805,-16.2556,0
chr10	2843375	.	G	C	103906	PASS	AB=0.458783;ABP=63.1552;AC=140;AF=0.744681;AN=188;AO=5080;CIGAR=1X;DP=7306;DPB=7306;DPRA=39.2688;EPP=10982;EPPR=4819.34;GTI=4;LEN=1;MEANALT=1.04301;MQM=59.9909;MQMR=59.9842;NS=94;NUMALT=1;ODDS=1.36753;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180716;QR=79371;RO=2222;RPL=6;RPP=10982;RPPR=4819.34;RPR=5074;RUN=1;SAF=5080;SAP=11034.1;SAR=0;SRF=2222;SRP=4828.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:44,20:44:1576:20:720:-45.8629,0,-122.866	1/1:85:0,84:0:0:84:2996:-269.513,-25.2865,0	0/1:103:43,60:43:1540:60:2156:-163.301,0,-107.887	0/1:233:117,116:117:4185:116:4134:-302.104,0,-306.69	0/1:68:30,38:30:1076:38:1368:-102.951,0,-76.6828	0/1:45:21,24:21:752:24:856:-63.8148,0,-54.4599	0/1:66:32,34:32:1148:34:1207:-89.0673,0,-83.7619	0/1:123:59,64:59:2112:64:2239:-164.745,0,-153.322	0/1:68:45,23:45:1612:23:820:-53.6525,0,-124.9	0/1:59:24,35:24:856:35:1239:-94.0529,0,-59.6003	0/1:27:16,11:16:576:11:392:-27.4922,0,-44.0472	0/1:51:21,30:21:752:30:1070:-81.2591,0,-52.6537	1/1:39:0,39:0:0:39:1383:-124.768,-11.7402,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:38:0,38:0:0:38:1339:-120.809,-11.4391,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:24:10,14:10:356:14:496:-37.7495,0,-25.1565	0/1:178:81,97:81:2896:97:3446:-256.77,0,-207.293	0/1:148:80,68:80:2851:68:2420:-173.504,0,-212.276	0/1:124:80,44:80:2853:44:1572:-104.444,0,-219.679	1/1:125:0,124:0:0:124:4421:-397.702,-37.3277,0	1/1:60:5,55:5:176:55:1972:-161.57,-1.87678,0	0/1:58:33,25:33:1180:25:900:-63.8613,0,-89.0483	1/1:206:1,205:1:36:205:7315:-654.803,-58.4139,0	1/1:187:0,187:0:0:187:6666:-600.02,-56.2926,0	0/1:20:11,9:11:387:9:320:-23.1218,0,-29.1453	0/1:182:88,94:88:3129:94:3356:-247.47,0,-227.048	0/1:127:74,53:74:2660:53:1862:-129.625,0,-201.415	1/1:122:0,122:0:0:122:4333:-390.148,-36.7257,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:21:11,10:11:396:10:343:-24.8789,0,-29.6611	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:99:0,99:0:0:99:3510:-316.112,-29.802,0	0/1:226:163,63:163:5833:63:2244:-134.191,0,-457.048	0/1:16:9,7:9:320:7:248:-17.8477,0,-24.3259	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:166:73,93:73:2602:93:3312:-248.327,0,-184.457	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	0/1:100:51,49:51:1817:49:1735:-126.331,0,-133.706	0/1:26:11,15:11:383:15:536:-40.748,0,-26.9765	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:222:131,91:131:4698:91:3214:-222.656,0,-356.149	1/1:104:0,103:0:0:103:3644:-327.956,-31.0061,0	0/1:192:112,80:112:4003:80:2842:-198.221,0,-302.662	1/1:78:0,78:0:0:78:2757:-248.372,-23.4803,0	1/1:102:0,102:0:0:102:3655:-329.153,-30.7051,0	1/1:132:0,131:0:0:131:4659:-419.112,-39.4349,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:145:71,74:71:2532:74:2623:-192.669,0,-184.482	1/1:59:0,59:0:0:59:2116:-190.708,-17.7608,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:116:0,116:0:0:116:4130:-371.885,-34.9195,0	0/1:69:39,30:39:1388:30:1072:-76.0214,0,-104.448	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/1:73:47,26:47:1684:26:911:-60.3279,0,-129.872	0/1:75:41,34:41:1468:34:1207:-86.358,0,-109.839	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:167:89,78:89:3188:78:2757:-198.1,0,-236.872	1/1:131:3,128:3:104:128:4537:-398.74,-29.7321,0	1/1:23:0,23:0:0:23:806:-72.8582,-6.92369,0	1/1:78:0,78:0:0:78:2776:-250.082,-23.4803,0	0/1:171:91,80:91:3232:80:2835:-203.912,0,-238.924	1/1:161:4,157:4:144:157:5567:-487.841,-35.1522,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:36:1,35:1:36:35:1256:-109.747,-7.23881,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	0/1:124:80,44:80:2868:44:1560:-103.364,0,-221.029	1/1:53:0,53:0:0:53:1878:-169.297,-15.9546,0	1/1:129:0,129:0:0:129:4569:-411.379,-38.8329,0	1/1:180:0,180:0:0:180:6391:-575.283,-54.1854,0	1/1:73:0,73:0:0:73:2594:-233.708,-21.9752,0	1/1:98:0,98:0:0:98:3491:-314.402,-29.5009,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:107:0,107:0:0:107:3836:-345.436,-32.2102,0	0/1:81:46,35:46:1624:35:1241:-87.6099,0,-122.063	0/1:138:74,64:74:2627:64:2284:-164.28,0,-195.136	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:31:0,31:0:0:31:1072:-96.7848,-9.33193,0	1/1:25:0,25:0:0:25:883:-79.7875,-7.52575,0	0/1:64:38,26:38:1355:26:924:-64.2117,0,-102.984	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:50:28,22:28:1004:22:774:-54.9287,0,-75.6244	0/1:41:16,25:16:572:25:888:-67.8968,0,-39.4712	0/1:7:2,5:2:72:5:172:-13.7108,0,-4.72951	0/1:40:15,25:15:532:25:888:-68.1978,0,-36.1719	0/1:45:31,14:31:1104:14:500:-31.7898,0,-86.1243	1/1:156:0,156:0:0:156:5573:-501.694,-46.9607,0	1/1:60:0,60:0:0:60:2128:-191.789,-18.0618,0
chr10	2951718	.	GTAAA	ATAAA,ATGAA	130345	PASS	AB=0.507644,0.485179;ABP=4.63704,9.12498;AC=138,48;AF=0.741935,0.258065;AN=186;AO=4560,1561;CIGAR=1X4M,1X1M1X2M;DP=6156;DPB=6156;DPRA=16.7174,1.11341;EPP=9904.92,3392.68;EPPR=13.8677;GTI=1;LEN=1,5;MEANALT=1.78261,2.29167;MQM=59.6252,46.9436;MQMR=60;NS=93;NUMALT=2;ODDS=1.57529;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=163145,55174;QR=179;RO=5;RPL=0,0;RPP=9904.92,3392.68;RPPR=13.8677;RPR=4560,1561;RUN=1,1;SAF=4560,1561;SAP=9904.92,3392.68;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:11:0,6,5:0:0:6,5:212,180:-32.223,-14.9611,-13.1549,-17.6177,0,-16.1125	1/1:112:0,112,0:0:0:112,0:4004,0:-360.449,-33.7154,0,-360.449,-33.7154,-360.449	1/2:77:0,33,44:0:0:33,44:1184,1563:-223.178,-126.608,-116.674,-96.9262,0,-83.6808	1/2:89:0,36,53:0:0:36,53:1296,1855:-254.857,-149.109,-138.272,-106.102,0,-90.1476	1/2:19:0,9,10:0:0:9,10:320,340:-53.843,-27.7571,-25.0478,-26.4331,0,-23.4228	1/2:29:0,8,20:0:0:8,20:284,711:-80.5278,-57.3925,-54.9843,-23.132,0,-17.1114	1/2:74:0,35,39:0:0:35,39:1256,1380:-214.191,-111.744,-101.208,-102.802,0,-91.0621	1/2:70:0,32,34:0:0:32,34:1148,1217:-192.026,-98.3854,-88.7524,-93.6543,0,-83.4193	1/2:31:0,15,16:0:0:15,16:540,576:-90.8662,-46.8113,-42.2958,-44.4129,0,-39.5964	1/2:53:0,31,22:0:0:31,22:1112,786:-154.298,-63.5936,-54.2617,-91.0594,0,-84.4368	1/2:125:1,53,70:1:36:53,70:1904,2436:-346.395,-191.378,-178.361,-152.396,0,-134.261	1/2:74:0,32,42:0:0:32,42:1148,1503:-215.564,-121.947,-112.314,-93.9741,0,-81.3308	1/1:71:0,71,0:0:0:71,0:2552,0:-229.732,-21.3731,0,-229.732,-21.3731,-229.732	1/1:132:0,131,0:0:0:131,0:4686,0:-421.52,-39.4349,0,-421.52,-39.4349,-421.52	1/1:55:0,54,0:0:0:54,0:1944,0:-174.979,-16.2556,0,-174.979,-16.2556,-174.979	1/1:72:0,72,0:0:0:72,0:2580,0:-232.412,-21.6742,0,-232.412,-21.6742,-232.412	1/1:102:0,101,0:0:0:101,0:3628,0:-326.366,-30.404,0,-326.366,-30.404,-326.366	1/1:83:1,81,0:1:35:81,0:2893,0:-257.062,-21.5353,0,-257.363,-24.3834,-260.21	1/2:71:0,43,27:0:0:43,27:1544,962:-203.632,-77.7108,-64.7665,-125.951,0,-117.823	1/2:103:0,53,50:0:0:53,50:1870,1760:-293.446,-141.178,-125.223,-152.618,0,-137.567	1/2:55:0,30,25:0:0:30,25:1080,877:-159.105,-70.9799,-61.949,-88.4777,0,-80.952	1/2:64:0,27,36:0:0:27,36:960,1281:-181.56,-103.327,-95.1992,-78.4085,0,-67.5714	1/1:24:0,24,0:0:0:24,0:860,0:-77.7042,-7.22472,0,-77.7042,-7.22472,-77.7042	1/2:44:0,37,7:0:0:37,7:1328,240:-127.946,-19.65,-8.51193,-108.639,0,-106.531	1/2:31:0,17,14:0:0:17,14:612,502:-90.7323,-40.7941,-35.6766,-50.295,0,-46.0806	1/1:172:0,172,0:0:0:172,0:6156,0:-554.016,-51.7772,0,-554.016,-51.7772,-554.016	1/1:133:0,131,2:0:0:131,2:4704,72:-423.099,-39.4349,0,-417.269,-33.2475,-416.667	1/2:45:1,19,25:1:36:19,25:684,895:-124.74,-69.2588,-66.4768,-52.8422,0,-48.2539	1/2:124:0,66,58:0:0:66,58:2372,2059:-359.667,-166.162,-146.294,-193.86,0,-176.4	1/2:83:0,57,26:0:0:57,26:2048,924:-242.158,-75.1032,-57.9445,-167.41,0,-159.583	1/1:43:0,43,0:0:0:43,0:1548,0:-139.611,-12.9443,0,-139.611,-12.9443,-139.611	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:11:0,8,3:0:0:8,3:288,108:-32.5957,-9.1075,-6.69926,-23.8463,0,-22.9432	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:179:0,179,0:0:0:179,0:6422,0:-577.787,-53.8844,0,-577.787,-53.8844,-577.787	1/2:96:0,48,48:0:0:48,48:1726,1696:-276.887,-136.34,-121.891,-140.901,0,-126.451	1/2:98:0,45,53:0:0:45,53:1608,1864:-282.009,-150.913,-137.367,-131.449,0,-115.495	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:65:0,33,32:0:0:33,32:1154,1111:-183.447,-89.6148,-79.6808,-94.1787,0,-84.5458	1/2:65:2,30,33:2:72:30,33:1072,1168:-175.313,-88.5262,-85.3706,-81.5083,0,-77.4494	1/2:68:0,39,29:0:0:39,29:1392,1007:-194.603,-81.1271,-69.3869,-113.825,0,-105.095	1/2:71:0,35,35:0:0:35,35:1252,1245:-202.211,-100.119,-89.5827,-102.127,0,-91.5908	1/1:54:0,52,0:0:0:52,0:1864,0:-167.646,-15.6536,0,-167.646,-15.6536,-167.646	1/2:58:0,28,30:0:0:28,30:997,1065:-167.527,-86.2659,-77.837,-81.6147,0,-72.5838	1/1:51:0,51,0:0:0:51,0:1820,0:-164.079,-15.3525,0,-164.079,-15.3525,-164.079	1/2:83:0,45,38:0:0:45,38:1612,1342:-239.172,-107.71,-94.1637,-131.814,0,-120.375	1/1:43:0,43,0:0:0:43,0:1525,0:-137.505,-12.9443,0,-137.505,-12.9443,-137.505	1/1:84:0,84,0:0:0:84,0:2992,0:-269.227,-25.2865,0,-269.227,-25.2865,-269.227	1/1:101:0,101,0:0:0:101,0:3579,0:-322.31,-30.404,0,-322.31,-30.404,-322.31	1/2:10:0,8,2:0:0:8,2:284,72:-29.3137,-6.17488,-3.76664,-23.4951,0,-22.8931	1/2:87:0,55,32:0:0:55,32:1931,1149:-250.288,-93.1538,-76.5971,-157.488,0,-147.855	1/1:43:0,43,0:0:0:43,0:1529,0:-137.888,-12.9443,0,-137.888,-12.9443,-137.888	1/2:6:0,3,3:0:0:3,3:108,100:-17.2137,-8.38741,-7.48432,-9.17208,0,-8.26899	1/1:59:0,59,0:0:0:59,0:2093,0:-188.623,-17.7608,0,-188.623,-17.7608,-188.623	1/2:18:0,9,9:0:0:9,9:324,315:-52.1857,-25.7449,-23.0356,-26.7942,0,-24.0849	1/1:5:0,5,0:0:0:5,0:180,0:-1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chr10	2965536	.	G	T	38881.3	PASS	AB=0.511715;ABP=8.40346;AC=47;AF=0.25;AN=188;AO=2333;CIGAR=1X;DP=8724;DPB=8724;DPRA=1.29603;EPP=5043.03;EPPR=13876.5;GTI=0;LEN=1;MEANALT=1.01786;MQM=59.9803;MQMR=59.9986;NS=94;NUMALT=1;ODDS=1.40987;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82661;QR=225701;RO=6389;RPL=2330;RPP=5043.03;RPPR=13876.5;RPR=3;RUN=1;SAF=2333;SAP=5069.06;SAR=0;SRF=6389;SRP=13876.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:19,28:19:672:28:971:-73.5476,0,-46.6584	0/0:118:117,1:117:4129:1:36:0,-31.9233,-368.2	0/1:118:53,65:53:1896:65:2308:-172.459,0,-135.397	0/1:158:80,78:80:2808:78:2747:-199.908,0,-205.398	0/1:69:35,34:35:1252:34:1211:-88.5244,0,-92.214	0/1:47:30,16:30:1063:16:559:-36.431,0,-81.7738	0/1:101:35,66:35:1247:66:2330:-179.556,0,-82.13	0/1:116:55,61:55:1926:61:2164:-160.105,0,-138.694	0/1:71:27,44:27:956:44:1563:-119.587,0,-64.9826	0/1:111:60,51:60:2136:51:1828:-131.387,0,-159.094	0/1:79:42,37:42:1482:37:1294:-92.9781,0,-109.892	0/1:71:27,44:27:968:44:1568:-120.038,0,-66.0642	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.822	0/0:119:119,0:119:4208:0:0:0,-35.8226,-378.903	0/0:60:60,0:60:2115:0:0:0,-18.0618,-190.619	0/0:64:64,0:64:2256:0:0:0,-19.2659,-203.301	0/0:77:77,0:77:2732:0:0:0,-23.1793,-246.124	0/0:77:77,0:77:2717:0:0:0,-23.1793,-244.774	0/1:54:24,30:24:835:30:1062:-79.6344,0,-59.2109	0/1:189:96,93:96:3413:93:3304:-240.684,0,-250.489	0/1:114:57,57:57:2008:57:2009:-146.76,0,-146.674	0/1:139:48,91:48:1708:91:3247:-250.551,0,-112.163	0/0:30:30,0:30:1058:0:0:0,-9.0309,-95.5296	0/0:98:90,8:90:3168:8:288:0,-3.23353,-259.079	0/1:60:33,27:33:1163:27:964:-69.015,0,-86.9143	0/0:258:257,1:257:9141:1:36:0,-74.0675,-819.072	0/0:167:167,0:167:5922:0:0:0,-50.272,-533.092	0/1:25:15,10:15:520:10:351:-24.4009,0,-39.6022	0/1:218:89,129:89:3143:129:4508:-340.266,0,-217.474	0/1:160:96,64:96:3388:64:2259:-155.406,0,-256.972	0/0:119:119,0:119:4170:0:0:0,-35.8226,-375.485	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:199:197,2:197:6872:2:61:0,-54.1117,-612.77	0/1:253:119,134:119:4239:134:4763:-352.67,0,-305.53	0/1:78:39,39:39:1370:39:1387:-101.648,0,-100.117	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:107:61,46:61:2096:46:1629:-114.687,0,-156.696	0/1:36:21,15:21:756:15:522:-36.4702,0,-57.5301	0/1:121:54,67:54:1900:67:2376:-177.671,0,-134.851	0/1:46:27,19:27:942:19:672:-46.9595,0,-71.245	0/0:53:53,0:53:1857:0:0:0,-15.9546,-167.408	0/1:92:44,48:44:1558:48:1712:-126.671,0,-112.815	0/0:95:95,0:95:3333:0:0:0,-28.5978,-300.189	0/1:132:59,73:59:2103:73:2547:-189.745,0,-149.803	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.613	0/0:122:122,0:122:4313:0:0:0,-36.7257,-388.348	0/0:177:177,0:177:6238:0:0:0,-53.2823,-561.522	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:166:72,94:72:2554:94:3343:-251.112,0,-180.139	0/0:89:89,0:89:3153:0:0:0,-26.7917,-283.996	0/1:22:13,9:13:460:9:315:-22.0646,0,-35.1127	0/0:132:130,2:130:4537:2:72:0,-32.8992,-401.666	0/1:34:13,21:13:468:21:752:-57.7712,0,-32.2246	0/1:5:2,3:2:72:3:99:-7.73143,0,-5.33157	0/1:22:14,8:14:489:8:269:-17.9135,0,-37.7162	0/1:92:52,40:52:1833:40:1409:-99.4105,0,-137.554	0/1:173:80,93:80:2822:93:3321:-247.03,0,-202.142	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/1:146:69,77:69:2466:77:2740:-202.893,0,-178.239	0/0:142:142,0:142:5030:0:0:0,-42.7463,-452.849	0/0:83:82,1:82:2892:1:36:0,-21.3872,-256.921	0/0:85:85,0:85:2997:0:0:0,-25.5875,-269.963	0/1:141:70,71:70:2487:71:2524:-184.962,0,-181.638	0/0:170:169,1:169:6009:1:36:0,-47.5768,-537.32	0/0:43:43,0:43:1515:0:0:0,-12.9443,-136.642	0/0:89:89,0:89:3140:0:0:0,-26.7917,-282.827	0/0:107:106,0:106:3749:0:0:0,-31.9092,-337.292	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:101:101,0:101:3541:0:0:0,-30.404,-318.901	0/0:42:41,1:41:1459:1:36:0,-9.04498,-128.007	0/0:141:141,0:141:4981:0:0:0,-42.4452,-448.441	0/0:125:125,0:125:4426:0:0:0,-37.6287,-398.513	0/0:105:105,0:105:3708:0:0:0,-31.6081,-333.921	0/0:102:101,1:101:3582:1:36:0,-27.1068,-318.991	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:55:55,0:55:1935:0:0:0,-16.5566,-174.423	0/1:101:58,43:58:2053:43:1540:-108.489,0,-154.636	0/1:189:86,103:86:3020:103:3671:-273.7,0,-215.138	0/0:139:139,0:139:4864:0:0:0,-41.8432,-437.921	0/0:72:72,0:72:2521:0:0:0,-21.6742,-227.14	0/0:82:82,0:82:2920:0:0:0,-24.6845,-263.036	0/1:135:76,59:76:2699:59:2094:-148.09,0,-202.516	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:54:31,23:31:1084:23:815:-57.4151,0,-81.6133	0/1:70:36,34:36:1268:34:1220:-89.0347,0,-93.3479	0/1:98:55,43:55:1968:43:1522:-107.771,0,-147.894	0/1:181:97,84:97:3433:84:2986:-214.479,0,-254.698	0/1:52:22,30:22:770:30:1045:-78.704,0,-53.9658	0/0:112:112,0:112:3949:0:0:0,-33.7154,-355.605	0/0:100:100,0:100:3501:0:0:0,-30.103,-315.303
chr10	2981382	.	G	C	81256.5	PASS	AB=0.466622;ABP=32.1467;AC=139;AF=0.747312;AN=186;AO=3935;CIGAR=1X;DP=5556;DPB=5556;DPRA=0;EPP=8547.75;EPPR=3509.94;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9751;MQMR=60;NS=93;NUMALT=1;ODDS=0.682927;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140742;QR=57686;RO=1615;RPL=0;RPP=8547.75;RPPR=3509.94;RPR=3935;RUN=1;SAF=3935;SAP=8547.75;SAR=0;SRF=1615;SRP=3509.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:20,31:20:716:31:1100:-83.9578,0,-49.4152	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:66:38,28:38:1368:28:1008:-71.1602,0,-103.553	0/1:157:76,81:76:2717:81:2905:-214.423,0,-197.51	0/1:62:32,30:32:1129:30:1076:-78.489,0,-83.2525	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	0/1:56:34,22:34:1194:22:780:-53.6654,0,-90.9036	0/1:59:37,22:37:1328:22:788:-53.484,0,-102.061	0/1:68:41,27:41:1460:27:972:-67.3279,0,-111.226	0/1:42:16,26:16:576:26:936:-71.9162,0,-39.5317	0/1:22:16,6:16:572:6:216:-13.1679,0,-45.1908	0/1:34:21,13:21:741:13:468:-32.2246,0,-56.7766	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/1:123:56,66:56:2008:66:2353:-174.942,0,-143.908	0/1:94:48,46:48:1712:46:1648:-120.312,0,-126.069	0/1:116:85,31:85:3036:31:1108:-65.1115,0,-238.551	1/1:92:0,92:0:0:92:3296:-296.859,-27.6948,0	1/1:56:1,55:1:36:55:1968:-173.797,-13.2594,0	0/1:94:49,45:49:1756:45:1608:-116.713,0,-130.027	1/1:189:2,187:2:72:187:6713:-597.405,-50.0579,0	1/1:149:0,147:0:0:147:5240:-471.378,-44.2514,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:158:90,68:90:3236:68:2432:-171.573,0,-243.898	0/1:82:54,28:54:1940:28:1008:-66.3519,0,-150.192	1/1:82:1,81:1:36:81:2884:-256.161,-21.0862,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:12:0,12:0:0:12:418:-37.7595,-3.61236,0	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	0/1:61:31,30:31:1097:30:1061:-77.4365,0,-80.6752	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.5478	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:99:53,46:53:1888:46:1640:-118.087,0,-140.396	0/1:21:11,10:11:392:10:351:-25.605,0,-29.2984	0/1:100:51,49:51:1805:49:1752:-127.861,0,-132.627	0/1:12:4,8:4:140:8:288:-22.655,0,-9.33222	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:126:78,47:78:2769:47:1688:-114.218,0,-211.462	1/1:81:1,80:1:36:80:2872:-255.118,-20.7852,0	0/1:127:58,69:58:2065:69:2444:-181.853,0,-147.888	1/1:78:0,78:0:0:78:2777:-250.17,-23.4803,0	1/1:48:2,46:2:72:46:1629:-140.06,-7.61272,0	1/1:131:0,131:0:0:131:4692:-422.44,-39.4349,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:184:94,90:94:3376:90:3201:-232.923,0,-248.665	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	0/1:15:12,3:12:417:3:108:-5.55972,0,-33.3448	1/1:77:0,77:0:0:77:2756:-248.281,-23.1793,0	0/1:46:20,26:20:716:26:936:-70.7121,0,-50.9203	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:64:27,37:27:968:37:1303:-98.3047,0,-68.1714	0/1:57:26,31:26:932:31:1108:-82.8723,0,-67.0402	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:123:61,62:61:2192:62:2216:-162.678,0,-160.519	1/1:113:1,112:1:36:112:4012:-357.671,-30.4181,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:67:0,67:0:0:67:2392:-215.537,-20.169,0	0/1:123:66,57:66:2327:57:2044:-147.205,0,-172.659	1/1:90:0,90:0:0:90:3217:-289.751,-27.0927,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:103:0,103:0:0:103:3688:-332.122,-31.0061,0	1/1:30:0,30:0:0:30:1072:-96.7919,-9.0309,0	1/1:104:0,104:0:0:104:3715:-334.55,-31.3071,0	1/1:113:0,113:0:0:113:4056:-365.226,-34.0164,0	1/1:69:0,69:0:0:69:2484:-223.813,-20.7711,0	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	1/1:10:0,10:0:0:10:356:-32.3741,-3.0103,0	1/1:78:1,77:1:36:77:2756:-244.679,-19.8821,0	0/1:75:32,43:32:1148:43:1548:-117.036,0,-81.0526	0/1:167:81,86:81:2889:86:3075:-226.705,0,-209.973	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	1/1:27:0,26:0:0:26:936:-84.1996,-7.82678,0	1/1:18:1,17:1:36:17:604:-51.0922,-1.82027,0	0/1:40:20,20:20:720:20:720:-53.0876,0,-53.0876	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:34:20,14:20:720:14:500:-35.1012,0,-54.8938	0/1:30:18,12:18:648:12:428:-29.8279,0,-49.621	0/1:25:10,15:10:360:15:540:-41.4108,0,-25.2186	0/1:42:25,17:25:896:17:608:-42.4088,0,-68.3171	0/1:22:19,3:19:680:3:108:-3.45251,0,-54.9065	1/1:82:0,81:0:0:81:2892:-260.157,-24.3834,0	1/1:46:1,45:1:36:45:1616:-142.132,-10.2491,0
chr10	2981628	.	T	A	25625.1	PASS	AB=0.527395;ABP=21.4513;AC=47;AF=0.25;AN=188;AO=1506;CIGAR=1X;DP=5223;DPB=5223;DPRA=1.2789;EPP=3273.25;EPPR=8063.52;GTI=4;LEN=1;MEANALT=1.04082;MQM=59.99;MQMR=59.9949;NS=94;NUMALT=1;ODDS=0.295837;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53979;QR=132850;RO=3712;RPL=1506;RPP=3273.25;RPPR=8063.52;RPR=0;RUN=1;SAF=0;SAP=3273.25;SAR=1506;SRF=0;SRP=8063.52;SRR=3712;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123	0/1:77:24,53:24:860:53:1904:-148.458,0,-54.5425	0/1:99:44,55:44:1572:55:1972:-147.953,0,-111.97	0/1:71:23,48:23:824:48:1728:-134.432,0,-53.1102	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5241	0/1:40:14,26:14:504:26:932:-72.1577,0,-33.6569	0/1:130:68,62:68:2436:62:2213:-160.299,0,-180.353	0/1:65:32,33:32:1152:33:1184:-87.3014,0,-84.4232	0/1:72:38,34:38:1364:34:1220:-88.4326,0,-101.369	0/1:19:12,7:12:432:7:248:-16.9446,0,-33.5016	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:83:38,45:38:1364:45:1612:-120.385,0,-98.0752	0/1:98:47,51:47:1684:51:1832:-135.66,0,-122.346	0/1:83:22,61:22:788:61:2192:-172.56,0,-46.2593	0/0:25:24,1:24:849:1:36:0,-3.92747,-73.1296	0/0:107:104,3:104:3686:3:108:0,-22.135,-321.867	0/1:63:22,41:22:788:41:1472:-113.811,0,-52.2799	0/0:226:226,0:226:8077:0:0:0,-68.0328,-726.948	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/1:134:60,74:60:2121:74:2656:-198.948,0,-150.819	0/1:99:54,45:54:1940:45:1616:-115.928,0,-145.074	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:159:76,83:76:2698:83:2964:-219.125,0,-195.198	0/1:12:4,8:4:140:8:288:-22.655,0,-9.33222	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:82:43,39:43:1544:39:1377:-99.5422,0,-114.569	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:119:58,61:58:2080:61:2192:-161.723,0,-151.648	0/1:37:22,13:22:784:13:460:-30.8403,0,-59.9883	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:59:39,20:39:1400:20:708:-46.2848,0,-108.538	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/1:136:67,69:67:2404:69:2469:-181.522,0,-175.676	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:115:115,0:115:4104:0:0:0,-34.6184,-369.547	0/0:3:1,0:1:36:0:0:0,-0.30103,-3.23845	0/1:84:44,40:44:1584:40:1440:-104.611,0,-117.565	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:26:14,12:14:500:12:428:-31.032,0,-37.5094	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:40:21,19:21:752:19:680:-49.488,0,-55.9651	0/1:55:37,18:37:1332:18:648:-42.0952,0,-103.626	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:148:65,83:65:2324:83:2988:-224.599,0,-164.868	0/0:146:146,0:146:5203:0:0:0,-43.9504,-468.406	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:191:107,83:107:3788:83:2976:-210.665,0,-283.708	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605	0/0:73:69,4:69:2476:4:144:0,-8.66157,-209.78	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:47:20,27:20:712:27:972:-73.6495,0,-50.2582	0/1:198:93,105:93:3306:105:3760:-278.996,0,-238.153	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:39:17,22:17:612:22:792:-59.8655,0,-43.6733	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:36:17,19:17:612:19:684:-51.0451,0,-44.5764	0/1:33:9,24:9:324:24:864:-68.1486,0,-19.5719	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:31:11,20:11:396:20:712:-55.0747,0,-26.6508	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061
chr10	3027356	.	TAAGG	CAAGG,CAAGT	171667	PASS	AB=0.685721,0.308297;ABP=2707.45,2884.48;AC=99,87;AF=0.532258,0.467742;AN=186;AO=6423,2803;CIGAR=1X4M,1X3M1X;DP=9282;DPB=9285.6;DPRA=0,10.28;EPP=13950.4,6089.65;EPPR=7.35324;GTI=10;LEN=1,5;MEANALT=2.52688,2.57778;MQM=45.5015,38.554;MQMR=54.5;NS=93;NUMALT=2;ODDS=6620.92;PAIRED=0,0;PAIREDR=0;PAO=9.5,9.5;PQA=313,313;PQR=0;PRO=0;QA=226181,98261;QR=71;RO=2;RPL=6423,2803;RPP=13950.4,6089.65;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=6423,2803;SAP=13950.4,6089.65;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23,0:0:0:23,0:820,0:-73.2856,-6.92369,0,-73.2856,-6.92369,-73.2856	1/2:214:0,175,38:0:0:175,38:6168,1311:-592.162,-96.4666,-43.7864,-495.805,0,-484.365	1/2:127:0,99,27:0:0:99,27:3458,942:-347.97,-70.2618,-40.4599,-277.729,0,-269.601	1/2:221:0,153,67:0:0:153,67:5440,2360:-620.698,-183.179,-137.121,-437.536,0,-417.367	1/2:23:0,20,3:0:0:20,3:705,108:-65.0765,-8.58219,-2.56159,-56.8342,0,-55.9311	1/2:30:0,25,5:0:0:25,5:876,180:-84.1155,-13.6704,-6.14461,-70.7778,0,-69.2726	1/2:87:0,69,17:0:0:69,17:2402,593:-238.005,-46.0907,-25.3197,-191.887,0,-186.77	1/2:94:0,69,24:0:0:69,24:2444,846:-259.083,-62.6967,-41.9256,-196.494,0,-189.269	1/2:161:0,92,69:0:0:92,69:3222,2407:-434.218,-175.809,-148.114,-258.737,0,-237.966	1/2:196:0,145,51:0:0:145,51:5091,1782:-544.797,-135.715,-92.0655,-409.416,0,-394.063	1/2:49:0,37,11:0:0:37,11:1275,394:-132.313,-30.0778,-18.9397,-102.228,0,-98.917	1/2:121:0,70,51:0:0:70,51:2459,1763:-326.314,-129.02,-107.948,-197.622,0,-182.27	1/2:116:0,75,41:0:0:75,41:2623,1450:-317.039,-106.921,-84.344,-210.39,0,-198.047	1/2:114:0,95,19:0:0:95,19:3341,669:-318.683,-51.3483,-22.7504,-267.613,0,-261.893	1/2:138:0,77,61:0:0:77,61:2722,2138:-385.569,-166.657,-143.477,-219.254,0,-200.891	1/2:45:0,30,15:0:0:30,15:1044,535:-124.632,-41.3041,-32.2732,-83.667,0,-79.1516	1/2:39:0,32,7:0:0:32,7:1135,236:-108.171,-16.8264,-7.19339,-91.6505,0,-89.5433	1/2:91:1,70,20:1:36:70,20:2476,716:-249.116,-50.2402,-32.1069,-196.213,0,-193.13	1/2:24:0,16,8:0:0:16,8:563,284:-66.7684,-21.4765,-16.66,-45.626,0,-43.2178	1/2:128:0,88,40:0:0:88,40:3087,1395:-357.467,-109.317,-82.8267,-248.489,0,-236.448	1/2:96:0,41,54:0:0:41,54:1472,1902:-263.779,-145.469,-133.126,-118.377,0,-102.121	1/2:85:0,61,24:0:0:61,24:2137,848:-238.105,-67.2159,-48.8531,-171.233,0,-164.008	1/2:43:0,14,29:0:0:14,29:473,1032:-118.819,-80.9019,-76.6875,-38.2538,0,-29.5239	1/2:76:0,56,20:0:0:56,20:1946,708:-210.509,-54.5255,-37.6678,-156.321,0,-150.3	1/2:69:0,40,28:0:0:40,28:1372,1001:-185.849,-75.6481,-63.6069,-110.26,0,-101.831	1/2:168:0,120,48:0:0:120,48:4235,1689:-474.193,-134.526,-98.4024,-340.012,0,-325.563	1/2:138:0,91,46:0:0:91,46:3223,1609:-379.436,-120.206,-92.8123,-259.237,0,-245.39	1/2:29:0,10,18:0:0:10,18:351,632:-75.7814,-47.5316,-44.5213,-28.4006,0,-22.9821	1/2:219:0,121,95:0:0:121,95:4229,3305:-599.083,-260.745,-224.321,-338.367,0,-309.769	1/1:91:0,82,8:0:0:82,8:2931,288:-260.854,-24.6845,0,-238.872,-2.56978,-236.464	1/2:63:0,48,13:0:0:48,13:1701,457:-172.615,-35.6444,-21.195,-137.022,0,-133.109	.:.:.:.:.:.:.:.	1/2:6:0,5,1:0:0:5,1:176,36:-17.2652,-3.08657,-1.58142,-14.519,0,-14.2179	1/1:6:0,6,0:0:0:6,0:216,0:-19.5379,-1.80618,0,-19.5379,-1.80618,-19.5379	1/1:1:0,1,0:0:0:1,0:36,0:-3.55862,-0.30103,0,-3.55862,-0.30103,-3.55862	1/2:15:0,12,3:0:0:12,3:428,108:-41.9286,-7.64322,-4.03086,-34.5996,0,-33.6965	1/2:350:0,232,117:0:0:232,117:8174,4125:-980.642,-325.4,-255.561,-655.231,0,-620.011	1/2:55:0,45,9:0:0:45,9:1561,302:-148.007,-23.3025,-9.75618,-124.78,0,-122.07	1/2:98:0,76,21:0:0:76,21:2689,736:-269.492,-53.563,-30.6847,-216.001,0,-209.679	1/2:5:0,4,1:0:0:4,1:140,36:-14.3616,-3.08657,-1.88245,-11.6154,0,-11.3143	1/2:134:0,106,26:0:0:106,26:3747,915:-370.043,-68.9737,-37.0646,-301.15,0,-293.323	1/2:36:0,20,16:0:0:20,16:711,573:-101.36,-44.1297,-38.1091,-57.5744,0,-52.7579	1/2:70:0,52,18:0:0:52,18:1834,633:-195.681,-48.4667,-32.8131,-147.493,0,-142.074	1/2:53:0,35,18:0:0:35,18:1231,623:-147.055,-48.1677,-37.6316,-99.1665,0,-93.7479	1/2:73:0,45,28:0:0:45,28:1595,960:-202.004,-73.8123,-60.2659,-128.526,0,-120.097	1/2:97:0,67,30:0:0:67,30:2381,1056:-273.845,-82.7335,-62.5645,-191.454,0,-182.423	1/2:150:0,124,25:0:0:124,25:4398,884:-417.562,-64.5147,-27.187,-353.091,0,-345.565	1/2:87:0,59,28:0:0:59,28:2072,990:-241.182,-74.8674,-57.1066,-166.649,0,-158.22	1/2:93:0,68,25:0:0:68,25:2405,883:-261.852,-68.7749,-48.3048,-193.361,0,-185.835	1/2:190:0,128,62:0:0:128,62:4513,2169:-531.689,-168.97,-130.438,-363.059,0,-344.395	1/2:130:0,106,21:0:0:106,21:3747,739:-359.141,-58.9334,-27.0242,-300.259,0,-293.938	1/2:4:0,2,2:0:0:2,2:59,71:-10.2602,-5.89137,-5.28931,-4.67868,0,-4.07662	1/2:159:0,132,26:0:0:132,26:4635,912:-440,-68.0782,-28.3422,-371.92,0,-364.093	1/2:31:0,26,5:0:0:26,5:884,180:-85.3877,-14.6915,-6.86471,-71.0457,0,-69.5405	1/1:36:0,33,3:0:0:33,3:1180,108:-104.842,-9.93399,0,-96.84,-1.59981,-95.937	1/2:149:0,89,58:0:0:89,58:3109,2024:-404.062,-154.493,-127.701,-249.543,0,-232.083	1/2:38:0,25,13:0:0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chr10	3073754	.	T	A	185214	PASS	AB=0.482972;ABP=14.3988;AC=140;AF=0.752688;AN=186;AO=6927;CIGAR=1X;DP=9282;DPB=9282;DPRA=0;EPP=621.827;EPPR=361.806;GTI=0;LEN=1;MEANALT=1.06452;MQM=59.9538;MQMR=59.9838;NS=93;NUMALT=1;ODDS=2.70645;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246351;QR=83950;RO=2349;RPL=5;RPP=15001.4;RPPR=5086.44;RPR=6922;RUN=1;SAF=4167;SAP=623.59;SAR=2760;SRF=1488;SRP=366.428;SRR=861;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:6,16:6:216:16:568:-44.8277,0,-13.1679	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	1/1:71:0,71:0:0:71:2527:-227.682,-21.3731,0	0/1:171:88,83:88:3141:83:2937:-213.089,0,-231.438	0/1:43:24,19:24:860:19:684:-48.946,0,-64.7775	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:134:73,61:73:2597:61:2184:-156.488,0,-193.639	0/1:94:50,44:50:1796:44:1576:-113.833,0,-132.769	0/1:58:19,39:19:684:39:1392:-108.119,0,-44.4306	0/1:69:36,33:36:1292:33:1160:-83.9356,0,-95.8127	0/1:147:68,79:68:2431:79:2813:-209.13,0,-174.794	0/1:93:41,52:41:1464:52:1872:-140.763,0,-104.06	1/1:118:0,118:0:0:118:4232:-381.059,-35.5215,0	1/1:174:0,174:0:0:174:6228:-559.289,-52.3792,0	1/1:178:0,177:0:0:177:6301:-566.814,-53.2823,0	1/1:132:0,132:0:0:132:4683:-421.635,-39.736,0	1/1:113:0,113:0:0:113:4060:-365.586,-34.0164,0	1/1:77:0,77:0:0:77:2737:-246.571,-23.1793,0	0/1:97:51,46:51:1836:46:1644:-119.049,0,-136.321	0/1:107:46,61:46:1652:61:2168:-163.177,0,-116.758	0/1:120:70,50:70:2504:50:1779:-124.268,0,-189.489	0/1:32:20,12:20:708:12:432:-29.5882,0,-54.4126	1/1:60:0,60:0:0:60:2110:-190.165,-18.0618,0	1/1:109:3,105:3:108:105:3710:-324.027,-22.7959,0	0/1:82:42,40:42:1491:40:1409:-102.421,0,-109.799	1/1:212:0,212:0:0:212:7494:-674.496,-63.8184,0	1/1:145:3,142:3:108:142:5045:-444.123,-33.5742,0	0/1:84:40,44:40:1436:44:1580:-117.205,0,-104.251	0/1:173:82,91:82:2936:91:3214:-237.399,0,-212.396	0/1:68:40,28:40:1436:28:996:-69.4848,0,-109.068	1/1:103:0,103:0:0:103:3632:-327.088,-31.0061,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:434:0,434:0:0:434:15474:-1392.1,-130.647,0	0/1:97:60,37:60:2144:37:1309:-88.9096,0,-164.028	0/1:76:37,39:37:1315:39:1404:-103.781,0,-95.7727	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:116:57,59:57:2032:59:2104:-154.699,0,-148.233	0/1:81:40,40:40:1436:40:1428:-104.375,0,-105.095	0/1:116:66,50:66:2372:50:1788:-126.283,0,-178.818	0/1:221:101,120:101:3628:120:4286:-319.39,0,-260.196	1/1:154:0,154:0:0:154:5411:-487.122,-46.3586,0	0/1:110:64,46:64:2284:46:1624:-113.335,0,-172.709	1/1:38:1,37:1:36:37:1320:-115.504,-7.84087,0	0/1:102:54,48:54:1928:48:1674:-120.237,0,-143.092	1/1:94:0,94:0:0:94:3364:-302.97,-28.2968,0	1/1:106:0,106:0:0:106:3747:-337.431,-31.9092,0	0/1:101:64,37:64:2288:37:1284:-85.4539,0,-175.778	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:49:28,21:28:1004:21:744:-52.5339,0,-75.9254	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:96:0,96:0:0:96:3432:-309.024,-28.8989,0	0/1:60:33,27:33:1180:27:948:-67.5701,0,-88.4429	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:83:49,34:49:1748:34:1220:-85.1213,0,-132.619	0/1:240:117,122:117:4157:122:4356:-319.91,0,-302.008	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:89:39,50:39:1396:50:1780:-133.691,0,-99.1474	1/1:139:2,137:2:72:137:4849:-429.729,-35.0064,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:54:0,54:0:0:54:1915:-172.627,-16.2556,0	0/1:144:66,78:66:2359:78:2753:-204.653,0,-169.22	1/1:94:1,93:1:36:93:3258:-289.841,-24.6985,0	1/1:88:1,87:1:36:87:3112:-276.709,-22.8924,0	1/1:36:0,36:0:0:36:1277:-115.231,-10.8371,0	1/1:218:0,218:0:0:218:7745:-697.086,-65.6245,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:24:0,24:0:0:24:849:-76.7278,-7.22472,0	1/1:39:0,39:0:0:39:1343:-121.162,-11.7402,0	1/1:130:0,130:0:0:130:4610:-415.065,-39.1339,0	1/1:112:0,112:0:0:112:3967:-356.522,-33.7154,0	1/1:63:0,63:0:0:63:2235:-201.412,-18.9649,0	1/1:32:1,31:1:36:31:1108:-96.4327,-6.03469,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:85:0,85:0:0:85:3029:-272.839,-25.5876,0	0/1:39:21,18:21:748:18:644:-46.5504,0,-55.9051	0/1:167:80,87:80:2819:87:3089:-227.966,0,-203.677	1/1:220:1,218:1:36:218:7791:-697.599,-62.6871,0	1/1:171:0,170:0:0:170:6083:-546.981,-51.1751,0	1/1:257:0,257:0:0:257:9159:-824.277,-77.3647,0	0/1:331:166,165:166:5914:165:5882:-429.851,0,-432.728	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:87:49,38:49:1752:38:1364:-96.8711,0,-131.775	0/1:93:50,43:50:1783:43:1522:-109.276,0,-132.756	0/1:112:60,52:60:2148:52:1856:-133.604,0,-159.872	0/1:177:91,86:91:3263:86:3092:-225.224,0,-240.607	0/1:173:114,59:114:4080:59:2116:-138.617,0,-315.308	1/1:73:0,73:0:0:73:2580:-232.448,-21.9752,0	1/1:297:0,297:0:0:297:10539:-948.431,-89.4059,0
chr10	3113561	.	G	A	149406	PASS	AB=0.429834;ABP=249.84;AC=141;AF=0.75;AN=188;AO=7220;CIGAR=1X;DP=10536;DPB=10536;DPRA=37.7527;EPP=15629;EPPR=7166.74;GTI=5;LEN=1;MEANALT=1.01075;MQM=59.9668;MQMR=59.9765;NS=94;NUMALT=1;ODDS=0.0198414;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258824;QR=118546;RO=3315;RPL=6;RPP=15629;RPPR=7166.74;RPR=7214;RUN=1;SAF=7220;SAP=15681;SAR=0;SRF=3315;SRP=7201.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	1/1:129:0,129:0:0:129:4636:-417.401,-38.8329,0	1/1:145:0,145:0:0:145:5208:-468.857,-43.6494,0	0/1:206:125,81:125:4484:81:2916:-200.532,0,-341.716	0/1:96:65,31:65:2332:31:1104:-70.7712,0,-181.241	0/1:112:59,53:59:2104:53:1881:-135.851,0,-155.914	0/1:118:58,60:58:2084:60:2156:-158.785,0,-152.308	0/1:232:121,111:121:4333:111:3976:-288.191,0,-320.304	0/1:96:53,43:53:1908:43:1536:-109.634,0,-143.099	0/1:121:63,58:63:2264:58:2088:-151.765,0,-167.598	0/1:42:20,22:20:711:22:792:-58.9624,0,-51.6724	0/1:62:32,30:32:1136:30:1065:-77.4959,0,-83.885	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:46:0,46:0:0:46:1656:-149.138,-13.8474,0	1/1:32:0,32:0:0:32:1147:-103.54,-9.63296,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	0/1:19:14,5:14:495:5:180:-10.8325,0,-39.1635	0/1:251:164,87:164:5855:87:3128:-206.187,0,-451.504	0/1:132:86,46:86:3068:46:1648:-108.873,0,-236.614	0/1:163:124,39:124:4431:39:1389:-76.2391,0,-349.764	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:160:12,148:12:432:148:5316:-439.351,-8.9436,0	0/1:96:63,33:63:2251:33:1188:-78.3297,0,-173.954	1/1:267:0,267:0:0:267:9574:-861.605,-80.375,0	1/1:188:0,188:0:0:188:6739:-606.582,-56.5936,0	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:291:171,120:171:6120:120:4286:-298.315,0,-463.301	0/1:334:200,134:200:7155:134:4807:-332.24,0,-543.463	1/1:157:0,157:0:0:157:5640:-507.718,-47.2617,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:8:4,4:4:136:4:144:-10.9054,0,-10.1673	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:127:0,127:0:0:127:4564:-410.924,-38.2308,0	0/1:324:165,159:165:5882:159:5720:-417.38,0,-431.953	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:190:105,85:105:3780:85:3056:-218.073,0,-283.201	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:202:120,82:120:4245:82:2919:-202.136,0,-321.422	0/1:54:28,26:28:992:26:932:-67.9432,0,-73.3388	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:128:90,38:90:3236:38:1368:-84.889,0,-252.929	1/1:195:0,195:0:0:195:6976:-627.753,-58.7009,0	0/1:292:142,150:142:5096:150:5388:-397.148,0,-370.878	1/1:110:0,110:0:0:110:3944:-355.151,-33.1133,0	1/1:191:0,191:0:0:191:6863:-617.735,-57.4967,0	0/1:169:110,59:110:3909:59:2124:-140.554,0,-301.129	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:181:91,90:91:3247:90:3224:-235.896,0,-237.965	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	1/1:134:1,133:1:36:133:4768:-425.676,-36.7397,0	0/1:73:44,29:44:1564:29:1040:-71.9392,0,-119.04	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	0/1:122:51,71:51:1832:71:2544:-191.708,0,-128.435	0/1:118:63,55:63:2244:55:1976:-142.593,0,-166.7	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:367:230,137:230:8205:137:4927:-333.1,0,-627.98	1/1:352:2,349:2:68:349:12505:-1118.82,-99.5304,0	1/1:98:0,98:0:0:98:3501:-315.3,-29.5009,0	1/1:84:0,84:0:0:84:2985:-268.882,-25.2865,0	0/1:255:150,105:150:5379:105:3768:-262.556,0,-407.459	1/1:61:1,60:1:36:60:2148:-189.989,-14.7646,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:92:1,91:1:36:91:3244:-288.581,-24.0965,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:133:0,133:0:0:133:4764:-428.917,-40.037,0	1/1:84:0,84:0:0:84:3000:-270.185,-25.2865,0	1/1:157:0,157:0:0:157:5611:-505.109,-47.2617,0	1/1:221:0,221:0:0:221:7881:-709.27,-66.5276,0	1/1:272:2,270:2:72:270:9700:-866.105,-75.0434,0	1/1:171:2,169:2:72:169:6041:-536.956,-44.6394,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:139:0,139:0:0:139:4992:-449.426,-41.8432,0	0/1:152:65,87:65:2324:87:3116:-234.91,0,-163.664	0/1:238:122,116:122:4372:116:4160:-302.937,0,-322.008	1/1:94:0,94:0:0:94:3369:-303.424,-28.2968,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:67:0,67:0:0:67:2397:-215.978,-20.169,0	0/1:122:72,50:72:2588:50:1800:-125.552,0,-196.443	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:80:47,33:47:1688:33:1173:-81.794,0,-128.125	0/1:53:20,33:20:708:33:1188:-91.274,0,-48.091	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	0/1:60:31,29:31:1104:29:1044:-76.213,0,-81.6088	0/1:50:36,14:36:1292:14:504:-30.6466,0,-101.532	1/1:155:0,155:0:0:155:5551:-499.522,-46.6597,0	1/1:61:0,61:0:0:61:2181:-196.554,-18.3628,0
chr10	3113593	.	AGGG	AGGA,CGGA	211750	PASS	AB=0.425275,0.571054;ABP=280.479,253.889;AC=141,47;AF=0.75,0.25;AN=188;AO=7036,3290;CIGAR=3M1X,1X2M1X;DP=10389;DPB=10390;DPRA=37.2258,1.56872;EPP=15281.5,7147.15;EPPR=7.35324;GTI=5;LEN=1,4;MEANALT=2.12903,2.5;MQM=59.9859,59.979;MQMR=60;NS=94;NUMALT=2;ODDS=1.303;PAIRED=0,0;PAIREDR=0;PAO=0,5;PQA=0,172;PQR=0;PRO=0;QA=249001,110586;QR=69;RO=2;RPL=7036,3290;RPP=15281.5,7147.15;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=7036,3290;SAP=15281.5,7147.15;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:22:0,9,13:0:0:9,13:315,430:-60.7411,-35.1051,-32.3959,-25.978,0,-22.0646	1/1:126:0,124,0:0:0:124,0:4389,0:-394.91,-37.3277,0,-394.91,-37.3277,-394.91	1/1:143:0,141,0:0:0:141,0:4979,0:-447.977,-42.4452,0,-447.977,-42.4452,-447.977	1/2:204:0,82,121:0:0:82,121:2908,4090:-568.509,-331.586,-306.901,-236.98,0,-200.555	1/2:95:0,31,64:0:0:31,64:1099,2177:-266.468,-176.93,-167.598,-89.8875,0,-70.6216	1/2:109:0,51,58:0:0:51,58:1786,1935:-302.289,-156.963,-141.611,-145.669,0,-128.209	1/2:118:0,59,59:0:0:59,59:2100,2009:-334.481,-163.32,-145.559,-171.509,0,-153.748	1/2:227:0,109,117:0:0:109,117:3851,3961:-634.906,-321.276,-288.464,-313.774,0,-278.553	1/2:91:0,39,52:0:0:39,52:1379,1770:-255.887,-143.568,-131.828,-112.308,0,-96.6546	1/2:121:0,59,62:0:0:59,62:2104,2114:-343.382,-171.862,-154.102,-171.869,0,-153.205	1/2:40:0,20,20:0:0:20,20:703,661:-111.014,-53.7817,-47.7611,-57.5729,0,-51.5523	1/2:61:0,30,31:0:0:30,31:1041,967:-162.624,-77.9878,-68.9569,-84.9662,0,-75.6343	1/1:61:0,61,0:0:0:61,0:2147,0:-193.496,-18.3628,0,-193.496,-18.3628,-193.496	1/1:61:0,60,0:0:0:60,0:2109,0:-189.866,-18.0618,0,-189.866,-18.0618,-189.866	1/1:46:0,45,0:0:0:45,0:1598,0:-143.859,-13.5464,0,-143.859,-13.5464,-143.859	1/1:32:0,32,0:0:0:32,0:1127,0:-101.737,-9.63296,0,-101.737,-9.63296,-101.737	1/1:67:0,67,0:0:0:67,0:2370,0:-213.558,-20.169,0,-213.558,-20.169,-213.558	1/1:55:1,54,0:1:35:54,0:1890,0:-166.879,-13.058,0,-167.18,-16.2556,-170.027	1/2:19:0,5,13:0:0:5,13:180,443:-50.7577,-36.0631,-34.5579,-14.8119,0,-10.8986	1/2:250:0,87,163:0:0:87,163:3100,5528:-701.295,-448.606,-422.417,-253.039,0,-203.971	1/2:135:0,46,88:0:0:46,88:1632,2886:-366.215,-233.239,-219.391,-133.069,0,-106.579	1/2:156:0,36,119:0:0:36,119:1280,4072:-434.831,-330.517,-319.68,-104.325,0,-68.5029	1/1:46:0,46,0:0:0:46,0:1618,0:-145.908,-13.8474,0,-145.908,-13.8474,-145.908	1/1:159:1,145,12:1:34:145,12:5128,391:-458.278,-40.8904,0,-427.014,-12.0946,-426.16	1/2:97:0,32,63:0:0:32,63:1124,2079:-259.668,-168.179,-158.546,-91.5951,0,-72.6302	1/1:262:0,260,0:0:0:260,0:9180,0:-825.893,-78.2678,0,-825.893,-78.2678,-825.893	1/1:188:0,187,0:0:0:187,0:6612,0:-594.918,-56.2926,0,-594.918,-56.2926,-594.918	1/2:22:0,12,10:0:0:12,10:427,308:-59.8367,-25.0104,-21.3981,-35.1559,0,-32.1456	1/2:286:0,114,171:0:0:114,171:4057,5785:-799.701,-469.05,-434.732,-330.729,0,-279.253	1/2:336:0,133,203:0:0:133,203:4690,6794:-932.347,-550.463,-510.426,-382.229,0,-321.119	1/1:151:0,150,0:0:0:150,0:5345,0:-480.824,-45.1545,0,-480.824,-45.1545,-480.824	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:8:0,4,3:0:0:4,3:144,79:-18.0246,-6.22371,-5.01959,-11.8455,0,-10.9425	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:6:0,6,0:0:0:6,0:208,0:-19.0591,-1.80618,0,-19.0591,-1.80618,-19.0591	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:124:0,123,0:0:0:123,0:4353,0:-391.59,-37.0267,0,-391.59,-37.0267,-391.59	1/2:320:0,152,167:0:0:152,167:5377,5631:-894.353,-456.387,-410.631,-438.031,0,-387.759	1/2:29:0,15,14:0:0:15,14:532,454:-80.3159,-36.9571,-32.4417,-43.6976,0,-39.4832	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:189:0,84,105:0:0:84,105:2953,3582:-531.362,-290.993,-265.706,-240.717,0,-209.108	1/2:21:0,9,12:0:0:9,12:307,406:-58.1645,-33.2533,-30.5441,-25.251,0,-21.6386	1/2:202:0,84,117:0:0:84,117:2971,3970:-563.98,-321.992,-296.706,-242.045,0,-206.824	1/2:54:0,26,28:0:0:26,28:910,907:-147.55,-73.4999,-65.6731,-74.3873,0,-65.9584	1/1:44:0,44,0:0:0:44,0:1542,0:-139.07,-13.2453,0,-139.07,-13.2453,-139.07	1/2:127:0,36,91:0:0:36,91:1292,3135:-360.383,-254.991,-244.154,-105.747,0,-78.353	1/1:190:0,188,0:0:0:188,0:6628,0:-596.313,-56.5936,0,-596.313,-56.5936,-596.313	1/2:294:0,147,146:0:0:147,146:5228,4865:-819.887,-393.821,-349.57,-426.16,0,-382.209	1/1:108:0,107,0:0:0:107,0:3772,0:-339.341,-32.2102,0,-339.341,-32.2102,-339.341	1/1:189:0,187,0:0:0:187,0:6666,0:-599.714,-56.2926,0,-599.714,-56.2926,-599.714	1/2:168:0,59,109:0:0:59,109:2086,3674:-467.603,-297.703,-279.942,-169.889,0,-137.077	2/2:3:0,0,3:0:0:0,3:0,106:-9.88916,-9.88916,-9.88916,-0.90309,-0.90309,0	1/2:179:0,87,92:0:0:87,92:3063,3081:-499.199,-249.83,-223.641,-249.713,0,-222.018	1/1:43:0,42,0:0:0:42,0:1500,0:-134.935,-12.6433,0,-134.935,-12.6433,-134.935	1/2:19:0,7,12:0:0:7,12:252,414:-54.5456,-33.9782,-31.8709,-20.9217,0,-17.3094	1/1:130:0,127,1:0:0:127,1:4520,36:-406.691,-38.2308,0,-403.753,-35.2501,-4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chr10	3204884	.	T	G	22181.1	PASS	AB=0.515352;ABP=8.27737;AC=49;AF=0.260638;AN=188;AO=1333;CIGAR=1X;DP=5046;DPB=5046;DPRA=1.21495;EPP=2897.58;EPPR=8054.83;GTI=1;LEN=1;MEANALT=1.01923;MQM=59.6197;MQMR=59.9898;NS=94;NUMALT=1;ODDS=2.13111;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47399;QR=132715;RO=3708;RPL=0;RPP=2897.58;RPPR=8054.83;RPR=1333;RUN=1;SAF=0;SAP=2897.58;SAR=1333;SRF=0;SRP=8054.83;SRR=3708;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:14,6:14:496:6:216:-13.752,0,-38.9537	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:108:46,62:46:1656:62:2209:-166.404,0,-116.817	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:20:4,16:4:140:16:563:-44.9786,0,-6.92398	0/1:36:25,11:25:900:11:387:-24.3289,0,-70.4839	0/1:58:27,31:27:964:31:1077:-79.7763,0,-69.6171	0/1:47:26,21:26:936:21:748:-53.4769,0,-70.4111	0/1:91:50,41:50:1792:41:1430:-101.578,0,-134.169	0/1:29:18,11:18:640:11:392:-26.8902,0,-49.1994	0/1:66:34,32:34:1220:32:1127:-81.8342,0,-90.2388	0/0:53:52,0:52:1851:0:0:0,-15.6536,-166.509	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:83:46,37:46:1641:37:1324:-94.4762,0,-122.991	0/1:169:76,93:76:2732:93:3315:-247.635,0,-195.248	0/1:57:17,40:17:612:40:1436:-112.361,0,-38.2547	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:137:136,1:136:4853:1:36:0,-37.6428,-433.325	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/1:29:17,12:17:597:12:398:-27.3994,0,-45.3263	0/1:151:70,81:70:2516:81:2896:-215.398,0,-181.236	0/1:61:18,43:18:640:43:1540:-120.468,0,-39.5665	0/0:62:61,1:61:2180:1:36:0,-15.0656,-192.868	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:181:180,1:180:6460:1:36:0,-50.8882,-577.886	0/1:68:41,27:41:1472:27:956:-65.8322,0,-112.306	0/1:24:14,10:14:500:10:360:-25.3887,0,-38.1115	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:41:13,28:13:468:28:988:-76.6629,0,-30.1174	0/1:17:9,8:9:320:8:284:-20.7858,0,-24.0248	0/1:33:10,23:10:352:23:807:-63.0152,0,-22.0842	0/1:45:33,12:33:1184:12:432:-25.6748,0,-93.322	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:54:17,37:17:612:37:1315:-102.343,0,-39.1578	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:90:36,54:36:1296:54:1921:-146.055,0,-89.8512	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:89:48,41:48:1728:41:1455:-104.454,0,-129.014	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:43:13,30:13:468:30:1080:-84.5674,0,-29.5154	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:76:74,2:74:2629:2:63:0,-16.8951,-230.856	0/1:23:9,14:9:324:14:500:-38.4125,0,-22.5822	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:12:6,6:6:216:6:203:-14.9888,0,-16.1782	0/1:32:15,17:15:540:17:608:-45.4191,0,-39.3036	0/1:43:22,21:22:773:21:743:-54.238,0,-56.9452	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:316:153,163:153:5481:163:5806:-427.482,0,-398.288	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:61:36,25:36:1296:25:875:-60.6857,0,-98.5811	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.328	0/0:68:67,0:67:2374:0:0:0,-20.169,-213.555	0/0:159:159,0:159:5674:0:0:0,-47.8638,-510.778	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:124:123,0:123:4411:0:0:0,-37.0267,-396.801	0/0:18:18,0:18:618:0:0:0,-5.41854,-55.9382	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:71:36,35:36:1292:35:1260:-92.3324,0,-95.2106	0/1:124:69,55:69:2476:55:1949:-138.354,0,-185.766	0/0:42:42,0:42:1485:0:0:0,-12.6433,-133.943	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:100:53,45:53:1896:45:1606:-114.931,0,-141.059	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/1:42:22,20:22:779:20:712:-51.7457,0,-57.7888	0/1:26:16,10:16:576:10:360:-24.8889,0,-44.3482	0/1:22:12,10:12:432:10:360:-26.1039,0,-32.5985	0/1:54:28,26:28:1004:26:936:-68.3034,0,-74.4202	0/1:55:14,41:14:504:41:1474:-116.388,0,-29.1414	0/0:299:299,0:299:10710:0:0:0,-90.008,-963.802	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684
chr10	3204898	.	C	T	22168.4	PASS	AB=0.516522;ABP=9.0378;AC=49;AF=0.260638;AN=188;AO=1318;CIGAR=1X;DP=4995;DPB=4995;DPRA=1.19533;EPP=2865.01;EPPR=7972.32;GTI=1;LEN=1;MEANALT=1.01961;MQM=59.61;MQMR=59.9867;NS=94;NUMALT=1;ODDS=1.92077;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47089;QR=131354;RO=3674;RPL=0;RPP=2865.01;RPPR=7972.32;RPR=1318;RUN=1;SAF=0;SAP=2865.01;SAR=1318;SRF=0;SRP=7981;SRR=3674;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:13,6:13:464:6:216:-14.0531,0,-36.3779	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:110:48,62:48:1708:62:2193:-164.384,0,-120.893	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:19:4,15:4:144:15:536:-42.8552,0,-7.59405	0/1:36:24,12:24:849:12:428:-28.0217,0,-65.8907	0/1:56:27,29:27:964:29:1036:-76.6962,0,-70.2191	0/1:46:25,21:25:881:21:752:-54.1389,0,-65.7585	0/1:91:52,39:52:1868:39:1396:-98.5274,0,-141.006	0/1:28:17,11:17:608:11:396:-27.5539,0,-46.6232	0/1:60:30,30:30:1080:30:1065:-78.0894,0,-79.4515	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.393	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:80:45,35:45:1607:35:1253:-88.9913,0,-120.837	0/1:170:75,95:75:2679:95:3377:-252.917,0,-190.18	0/1:56:15,41:15:536:41:1476:-116.261,0,-31.7171	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:11:9,2:9:324:2:68:-3.14638,0,-26.1945	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:136:135,1:135:4852:1:36:0,-37.3418,-433.233	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:28:17,11:17:597:11:385:-26.5535,0,-45.6273	0/1:155:70,85:70:2496:85:3048:-227.867,0,-178.234	0/1:61:18,43:18:640:43:1526:-119.213,0,-39.5665	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:176:175,1:175:6283:1:36:0,-49.383,-561.962	0/1:67:42,25:42:1512:25:900:-61.0976,0,-116.206	0/1:22:13,9:13:464:9:324:-22.7522,0,-35.4748	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:40:12,28:12:432:28:996:-77.6849,0,-27.18	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:31:8,23:8:288:23:828:-65.5122,0,-16.9355	0/1:46:33,13:33:1188:13:468:-28.6123,0,-93.3812	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/1:55:19,36:19:669:36:1276:-98.5063,0,-43.9773	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:89:37,52:37:1324:52:1872:-141.95,0,-92.6704	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:89:49,40:49:1756:40:1436:-102.746,0,-131.532	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:42:12,30:12:432:30:1068:-83.7873,0,-26.5779	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:73:72,1:72:2569:1:36:0,-18.3769,-227.842	0/1:23:9,14:9:320:14:500:-38.4125,0,-22.2187	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:31:14,17:14:504:17:612:-46.0815,0,-36.3662	0/1:39:21,18:21:744:18:644:-46.5457,0,-55.5442	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:320:155,165:155:5537:165:5908:-435.47,0,-402.123	0/0:107:107,0:107:3827:0:0:0,-32.2102,-344.626	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:35:34,0:34:1220:0:0:0,-10.235,-109.729	0/1:57:34,23:34:1224:23:820:-56.9638,0,-93.3083	0/0:86:86,0:86:3064:0:0:0,-25.8886,-275.987	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.444	0/0:68:68,0:68:2416:0:0:0,-20.47,-217.694	0/0:157:157,0:157:5620:0:0:0,-47.2617,-505.922	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.097	0/0:125:125,0:125:4487:0:0:0,-37.6287,-403.997	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/1:68:33,35:33:1169:35:1248:-92.1548,0,-85.0452	0/1:125:70,55:70:2485:55:1968:-139.752,0,-186.274	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:96:52,44:52:1849:44:1567:-112.378,0,-137.772	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:42:21,21:21:752:21:756:-55.7063,0,-55.363	0/1:25:15,10:15:540:10:360:-25.1899,0,-41.4108	0/1:22:12,10:12:417:10:350:-25.2092,0,-31.2376	0/1:53:27,25:27:968:25:896:-64.9466,0,-71.424	0/1:56:15,41:15:531:41:1449:-113.826,0,-31.2642	0/0:294:294,0:294:10485:0:0:0,-88.5028,-943.571	0/0:75:74,0:74:2651:0:0:0,-22.2762,-238.555
chr10	3204942	.	T	A	33269.3	PASS	AB=0.469929;ABP=37.3571;AC=47;AF=0.25;AN=188;AO=2058;CIGAR=1X;DP=8844;DPB=8844;DPRA=1.0017;EPP=4471.9;EPPR=14732.1;GTI=2;LEN=1;MEANALT=1.02;MQM=52.1944;MQMR=59.4558;NS=94;NUMALT=1;ODDS=0.247045;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73301;QR=242127;RO=6783;RPL=0;RPP=4471.9;RPPR=14732.1;RPR=2058;RUN=1;SAF=2058;SAP=4471.9;SAR=0;SRF=6783;SRP=14732.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:26,16:26:917:16:557:-37.4056,0,-69.8947	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.744	0/0:164:164,0:164:5867:0:0:0,-49.3689,-527.604	0/1:164:91,73:91:3252:73:2608:-184.654,0,-243.508	0/1:75:27,48:27:964:48:1709:-130.241,0,-64.4996	0/1:24:16,8:16:564:8:288:-18.8476,0,-43.8632	0/1:143:78,65:78:2792:65:2324:-165.938,0,-208.445	0/1:148:83,65:83:2972:65:2309:-161.13,0,-222.608	0/1:93:53,40:53:1892:40:1427:-99.6586,0,-142.522	0/1:109:50,59:50:1784:59:2086:-154.704,0,-128.026	0/1:58:32,26:32:1148:26:928:-66.1384,0,-86.0172	0/1:80:39,41:39:1374:41:1468:-107.65,0,-99.8192	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.495	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.675	0/0:66:66,0:66:2364:0:0:0,-19.868,-212.885	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.844	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.231	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.628	0/1:39:25,14:25:900:14:500:-33.0897,0,-69.5799	0/1:195:101,94:101:3616:94:3364:-243.635,0,-266.753	0/1:139:74,65:74:2619:65:2306:-164.694,0,-193.076	0/1:132:45,87:45:1612:87:3078:-236.899,0,-105.576	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.351	0/0:105:104,1:104:3720:1:36:0,-28.0189,-331.362	0/1:102:57,45:57:2028:45:1607:-113.593,0,-152.058	0/0:282:282,0:282:10061:0:0:0,-84.8905,-903.304	0/0:258:258,0:258:9216:0:0:0,-77.6657,-829.081	0/1:28:14,14:14:504:14:489:-35.6678,0,-37.2646	0/1:279:149,130:149:5307:130:4630:-332.348,0,-393.752	0/1:111:56,55:56:2008:55:1953:-141.705,0,-147.536	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.805	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:19:12,7:12:428:7:248:-16.7589,0,-33.1392	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.4008	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:148:148,0:148:5299:0:0:0,-44.5524,-477.029	0/1:142:75,67:75:2688:67:2400:-171.778,0,-199.309	0/1:50:31,19:31:1103:19:680:-45.9796,0,-84.4898	0/1:2:1,1:1:36:1:36:-2.98717,0,-2.99621	0/1:125:65,60:65:2320:60:2133:-153.767,0,-171.406	0/1:16:4,12:4:144:12:432:-34.123,0,-8.48877	0/1:112:60,52:60:2136:52:1860:-132.536,0,-158.788	0/1:62:20,42:20:712:42:1489:-115.142,0,-45.7428	0/0:43:43,0:43:1532:0:0:0,-12.9443,-137.964	0/1:120:57,63:57:2036:63:2248:-166.115,0,-147.16	0/0:127:127,0:127:4525:0:0:0,-38.2308,-406.854	0/1:219:103,116:103:3688:116:4127:-304.103,0,-266.173	0/0:92:91,1:91:3260:1:21:0,-25.595,-291.504	0/0:143:143,0:143:5092:0:0:0,-43.0473,-458.168	0/1:123:60,63:60:2137:63:2240:-164.68,0,-155.567	0/1:6:3,3:3:108:3:108:-8.2547,0,-8.26899	0/1:124:71,53:71:2540:53:1896:-132.185,0,-191.522	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.037	0/1:10:8,2:8:280:2:72:-3.78936,0,-22.5218	0/0:175:175,0:175:6217:0:0:0,-52.6802,-558.444	0/1:61:42,19:42:1508:19:665:-41.6475,0,-117.643	0/1:10:4,6:4:140:6:216:-16.7659,0,-9.93428	0/1:18:14,4:14:500:4:144:-7.79947,0,-39.9176	0/1:74:45,28:45:1604:28:1004:-67.8094,0,-122.307	0/1:116:58,58:58:2059:58:2080:-152.161,0,-150.425	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0196	0/1:161:91,70:91:3245:70:2497:-176.327,0,-243.792	0/0:201:201,0:201:7129:0:0:0,-60.507,-640.662	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.246	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.109	0/1:110:68,42:68:2444:42:1498:-101.048,0,-187.079	0/0:163:163,0:163:5844:0:0:0,-49.0679,-526.03	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6202	0/0:84:84,0:84:2984:0:0:0,-25.2865,-268.647	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.017	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.5601	0/0:120:120,0:120:4256:0:0:0,-36.1236,-382.598	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.233	0/0:183:183,0:183:6521:0:0:0,-55.0885,-586.838	0/0:204:204,0:204:7292:0:0:0,-61.4101,-656.19	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.41	0/0:128:128,0:128:4568:0:0:0,-38.5318,-411.077	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:138:137,1:137:4884:1:36:0,-37.9529,-436.023	0/1:125:75,50:75:2669:50:1765:-120.163,0,-202.772	0/1:185:108,77:108:3829:77:2703:-187.24,0,-289.086	0/0:75:74,0:74:2642:0:0:0,-22.2762,-237.653	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.886	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:110:53,57:53:1887:57:2044:-150.702,0,-136.971	0/0:38:38,0:38:1338:0:0:0,-11.4391,-119.923	0/1:60:33,27:33:1176:27:968:-68.642,0,-88.0436	0/1:71:44,27:44:1564:27:972:-65.8994,0,-119.582	0/1:43:28,15:28:1004:15:540:-35.8408,0,-77.7316	0/1:86:46,40:46:1640:40:1436:-102.884,0,-121.983	0/1:52:22,30:22:783:30:1076:-80.5079,0,-55.1157	0/0:139:138,0:138:4940:0:0:0,-41.5421,-443.216	0/0:115:115,0:115:4103:0:0:0,-34.6184,-369.428
chr10	3259139	.	A	T	587807	PASS	AB=0.606191;ABP=911.08;AC=147;AF=0.781915;AN=188;AO=21914;CIGAR=1X;DP=25651;DPB=25651;DPRA=0;EPP=47580;EPPR=8083.06;GTI=2;LEN=1;MEANALT=1.15957;MQM=59.9764;MQMR=59.9868;NS=94;NUMALT=1;ODDS=14.9426;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=778207;QR=132366;RO=3721;RPL=15092;RPP=6780.11;RPPR=84.2021;RPR=6822;RUN=1;SAF=15091;SAP=6776.83;SAR=6823;SRF=1674;SRP=84.2021;SRR=2047;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:110:56,54:56:1994:54:1936:-141.401,0,-146.619	1/1:176:0,176:0:0:176:6252:-562.775,-52.9813,0	1/1:237:1,236:1:36:236:8435:-755.466,-67.7458,0	0/1:392:184,208:184:6558:208:7407:-548.675,0,-472.298	0/1:192:78,114:78:2804:114:4083:-309.857,0,-194.801	0/1:121:46,74:46:1629:74:2637:-201.092,0,-110.414	0/1:245:86,159:86:3084:159:5644:-434.328,0,-204.035	0/1:250:115,134:115:4080:134:4784:-355.399,0,-292.071	0/1:188:92,96:92:3265:96:3440:-253.219,0,-237.477	0/1:181:93,88:93:3287:88:3118:-226.361,0,-241.563	0/1:353:54,298:54:1914:298:10494:-838.068,0,-66.2137	0/1:148:66,81:66:2368:81:2896:-216.265,0,-168.767	1/1:147:0,147:0:0:147:5176:-465.983,-44.2514,0	1/1:150:0,150:0:0:150:5347:-481.364,-45.1545,0	1/1:131:0,131:0:0:131:4654:-419.023,-39.4349,0	1/1:115:1,113:1:32:113:3996:-356.608,-31.458,0	1/1:100:1,99:1:36:99:3514:-312.873,-26.5047,0	1/1:92:0,91:0:0:91:3231:-290.693,-27.3937,0	0/1:199:39,160:39:1395:160:5693:-452.583,0,-65.9434	0/1:322:112,210:112:3996:210:7480:-576.31,0,-262.897	0/1:239:94,145:94:3342:145:5125:-389.448,0,-229.052	0/1:110:78,32:78:2773:32:1148:-70.5165,0,-216.697	1/1:255:0,255:0:0:255:9113:-820.083,-76.7627,0	1/1:195:3,191:3:108:191:6739:-596.545,-48.5721,0	0/1:213:94,119:94:3349:119:4227:-316.491,0,-237.507	1/1:532:0,532:0:0:532:18934:-1703.44,-160.148,0	1/1:559:0,559:0:0:559:19892:-1789.81,-168.276,0	0/1:69:29,40:29:1025:40:1408:-106.243,0,-71.7896	0/1:419:183,236:183:6494:236:8412:-630.953,0,-458.414	0/1:179:57,122:57:2023:122:4327:-335.562,0,-128.458	1/1:261:0,261:0:0:261:9307:-837.598,-78.5688,0	1/1:930:0,930:0:0:930:33037:-2972.31,-279.958,0	1/1:183:6,177:6:216:177:6299:-547.215,-35.298,0	1/1:1014:0,1014:0:0:1014:35871:-3227.26,-305.244,0	1/1:1093:0,1092:0:0:1092:38701:-3481.38,-328.725,0	1/1:483:1,482:1:32:482:17102:-1535.63,-142.198,0	1/1:348:0,348:0:0:348:12306:-1107.39,-104.758,0	0/1:168:83,85:83:2960:85:3024:-221.819,0,-216.061	0/1:352:58,292:58:2062:292:10285:-819.844,0,-80.1297	1/1:192:4,188:4:140:188:6671:-587.525,-44.8532,0	0/1:242:106,136:106:3768:136:4840:-362.901,0,-266.47	0/1:176:24,152:24:843:152:5401:-433.241,0,-23.2067	0/1:218:98,120:98:3495:120:4270:-318.798,0,-249.081	0/1:129:67,62:67:2395:62:2208:-160.15,0,-176.974	1/1:98:0,97:0:0:97:3418:-307.474,-29.1999,0	0/1:257:104,153:104:3708:153:5442:-412.541,0,-256.559	1/1:178:2,176:2:72:176:6236:-554.13,-46.7466,0	0/1:242:107,135:107:3781:135:4815:-360.655,0,-267.64	1/1:124:0,124:0:0:124:4404:-396.529,-37.3277,0	1/1:202:0,202:0:0:202:7222:-650.033,-60.8081,0	0/1:223:93,130:93:3298:130:4625:-349.285,0,-229.908	1/1:496:6,490:6:216:490:17290:-1535.96,-129.52,0	0/1:207:90,116:90:3206:116:4128:-309.333,0,-226.391	1/1:186:0,186:0:0:186:6628:-596.601,-55.9916,0	1/1:489:3,485:3:108:485:17080:-1526.79,-137.187,0	1/1:332:1,330:1:36:330:11704:-1049.6,-96.4025,0	0/1:111:44,67:44:1568:67:2377:-180.772,0,-107.997	1/1:406:2,404:2:72:404:14382:-1287.3,-115.381,0	1/1:446:8,438:8:288:438:15529:-1371.06,-107.992,0	0/1:175:70,105:70:2491:105:3749:-284.928,0,-171.763	0/1:180:90,90:90:3200:90:3200:-234.037,0,-234.037	1/1:456:0,456:0:0:456:16150:-1453.19,-137.27,0	0/1:250:164,86:164:5883:86:3060:-200.368,0,-454.32	1/1:278:1,277:1:36:277:9864:-884.11,-80.0881,0	0/1:114:64,50:64:2287:50:1764:-124.723,0,-171.704	1/1:209:0,209:0:0:209:7420:-667.849,-62.9153,0	0/1:286:148,137:148:5242:137:4893:-354.368,0,-385.748	1/1:171:2,169:2:72:169:6035:-536.418,-44.6394,0	1/1:512:0,512:0:0:512:18197:-1637.33,-154.127,0	1/1:110:0,110:0:0:110:3916:-352.633,-33.1133,0	1/1:125:0,125:0:0:125:4451:-400.762,-37.6288,0	1/1:505:0,505:0:0:505:17999:-1619.52,-152.02,0	1/1:169:0,168:0:0:168:5963:-536.455,-50.573,0	1/1:146:0,146:0:0:146:5176:-465.978,-43.9504,0	1/1:356:0,356:0:0:356:12633:-1136.76,-107.167,0	1/1:315:0,315:0:0:315:11235:-1011.03,-94.8245,0	1/1:234:0,234:0:0:234:8363:-752.674,-70.441,0	1/1:194:1,193:1:36:193:6888:-616.331,-54.8015,0	1/1:1152:1,1151:1:36:1151:40835:-3670.23,-343.188,0	1/1:231:0,231:0:0:231:8248:-742.33,-69.5379,0	0/1:245:99,146:99:3512:146:5194:-393.847,0,-242.538	0/1:359:144,215:144:5122:215:7668:-582.082,0,-353.052	1/1:157:0,157:0:0:157:5534:-498.187,-47.2617,0	1/1:111:0,111:0:0:111:3967:-357.221,-33.4143,0	1/1:145:0,145:0:0:145:5163:-464.811,-43.6494,0	0/1:280:132,148:132:4706:148:5286:-391.587,0,-339.412	1/1:58:0,58:0:0:58:2062:-185.85,-17.4597,0	0/1:154:66,88:66:2333:88:3121:-234.758,0,-163.868	0/1:137:71,66:71:2498:66:2347:-170.246,0,-183.83	1/1:374:34,340:34:1203:340:12061:-976.773,-4.01018,0	0/1:697:71,626:71:2526:626:22157:-1783.76,0,-17.773	0/1:139:94,45:94:3327:45:1579:-100.553,0,-257.804	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:201:0,201:0:0:201:7129:-641.67,-60.507,0
chr10	3271784	.	G	A	135490	PASS	AB=0.508222;ABP=9.86617;AC=48;AF=0.255319;AN=188;AO=5968;CIGAR=1X;DP=22744;DPB=22744;DPRA=1.42935;EPP=12962.4;EPPR=36403.4;GTI=0;LEN=1;MEANALT=1.06667;MQM=59.9886;MQMR=59.9944;NS=94;NUMALT=1;ODDS=3.92975;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212709;QR=591010;RO=16771;RPL=2356;RPP=577.001;RPPR=1376.52;RPR=3612;RUN=1;SAF=2356;SAP=577.001;SAR=3612;SRF=6759;SRP=1373.15;SRR=10012;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:118:48,70:48:1699:70:2501:-189.819,0,-117.674	0/0:353:351,2:351:12318:2:72:0,-99.4269,-1100.46	0/0:383:383,0:383:13561:0:0:0,-115.294,-1220.29	0/1:591:284,306:284:10048:306:10887:-801.767,0,-726.295	0/1:356:178,178:178:6251:178:6350:-464.426,0,-455.523	0/1:78:47,31:47:1662:31:1112:-76.911,0,-126.386	0/1:285:141,144:141:4930:144:5147:-377.533,0,-358.064	0/1:348:179,169:179:6307:169:6003:-435.62,0,-462.972	0/1:309:137,172:137:4813:172:6100:-455.998,0,-340.308	0/1:216:94,122:94:3324:122:4320:-323.953,0,-234.356	0/1:144:61,83:61:2133:83:2959:-223.194,0,-148.886	0/1:242:117,125:117:4064:125:4462:-328.901,0,-293.1	0/0:189:189,0:189:6690:0:0:0,-56.8947,-602.183	0/0:190:190,0:190:6656:0:0:0,-57.1957,-599.129	0/0:174:174,0:174:6125:0:0:0,-52.3792,-551.356	0/0:164:164,0:164:5810:0:0:0,-49.3689,-523.017	0/0:140:140,0:140:4929:0:0:0,-42.1442,-443.763	0/0:120:119,1:119:4158:1:36:0,-32.5253,-370.809	0/1:91:43,48:43:1490:48:1724:-128.052,0,-106.995	0/1:446:223,223:223:7825:223:7991:-584.949,0,-570.032	0/1:352:158,194:158:5534:194:6904:-515.468,0,-392.231	0/1:236:83,153:83:2940:153:5461:-420.575,0,-193.791	0/0:285:285,0:285:10115:0:0:0,-85.7935,-910.29	0/0:303:290,12:290:10274:12:423:0,-52.8652,-886.19	0/1:283:151,132:151:5340:132:4704:-338.33,0,-395.547	0/0:710:709,1:709:25005:1:36:0,-210.133,-2246.2	0/0:648:645,3:645:22795:3:108:0,-184.992,-2040.9	0/1:95:44,51:44:1515:51:1824:-135.843,0,-108.041	0/1:530:254,276:254:9055:276:9868:-728.515,0,-655.386	0/1:244:142,102:142:5000:102:3637:-254.083,0,-376.698	0/0:247:244,2:244:8624:2:72:0,-67.5499,-769.337	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:489:489,0:489:17153:0:0:0,-147.204,-1543.44	0/1:339:176,163:176:6182:163:5780:-418.269,0,-454.435	0/1:123:50,73:50:1775:73:2600:-197.223,0,-123.006	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:403:230,173:230:8098:173:6167:-433.813,0,-607.534	0/1:92:47,45:47:1641:45:1604:-116.955,0,-120.278	0/1:376:198,178:198:6929:178:6348:-458.225,0,-510.498	0/1:217:117,100:117:4106:100:3566:-255.824,0,-304.406	0/0:173:173,0:173:6071:0:0:0,-52.0782,-546.502	0/1:222:112,110:112:3980:110:3928:-286.846,0,-291.562	0/0:323:322,0:322:11357:0:0:0,-96.9317,-1021.75	0/1:451:226,225:226:7964:225:8017:-585.788,0,-581.029	0/0:279:279,0:279:9840:0:0:0,-83.9874,-885.559	0/0:392:390,2:390:13768:2:72:0,-111.167,-1232.08	0/1:350:165,185:165:5837:185:6626:-491.057,0,-420.086	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:352:187,165:187:6655:165:5900:-425.145,0,-493.07	0/0:127:127,0:127:4488:0:0:0,-38.2308,-404.093	0/1:25:12,13:12:432:13:449:-33.2117,0,-31.6954	0/0:305:305,0:305:10684:0:0:0,-91.8141,-961.492	0/1:123:53,70:53:1874:70:2499:-188.136,0,-131.911	0/1:16:5,11:5:180:11:381:-29.8042,0,-11.7356	0/1:17:9,8:9:315:8:288:-21.1499,0,-23.5697	0/1:241:123,118:123:4347:118:4197:-305.363,0,-318.859	0/1:244:104,140:104:3655:140:4990:-375.797,0,-255.703	0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0178	0/1:488:225,263:225:7917:263:9388:-697.982,0,-565.662	0/0:496:494,2:494:17418:2:72:0,-142.474,-1560.43	0/1:145:83,62:83:2902:62:2198:-154.435,0,-217.764	0/0:207:207,0:207:7318:0:0:0,-62.3132,-658.676	0/1:369:192,177:192:6723:177:6308:-456.731,0,-494.077	0/0:304:303,1:303:10674:1:36:0,-87.9148,-956.983	0/0:113:113,0:113:3953:0:0:0,-34.0164,-355.963	0/0:171:171,0:171:6011:0:0:0,-51.4761,-541.101	0/0:163:163,0:163:5749:0:0:0,-49.0679,-517.532	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.646	0/0:231:230,1:230:8112:1:36:0,-65.9397,-726.505	0/0:190:190,0:190:6693:0:0:0,-57.1957,-602.453	0/0:453:453,0:453:16023:0:0:0,-136.367,-1441.64	0/0:480:479,1:479:16815:1:36:0,-140.896,-1509.44	0/0:240:240,0:240:8519:0:0:0,-72.2472,-766.714	0/0:327:321,6:321:11329:6:216:0,-78.6751,-999.745	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:279:279,0:279:9764:0:0:0,-83.9874,-878.725	0/1:247:115,132:115:4063:132:4713:-349.974,0,-291.504	0/1:595:314,281:314:11077:281:10008:-721.545,0,-817.724	0/0:188:188,0:188:6590:0:0:0,-56.5936,-593.188	0/0:178:178,0:178:6263:0:0:0,-53.5833,-563.773	0/0:208:208,0:208:7236:0:0:0,-62.6142,-651.31	0/1:381:193,188:193:6735:188:6682:-486.769,0,-491.507	0/0:96:96,0:96:3420:0:0:0,-28.8989,-308.015	0/1:177:90,87:90:3165:87:3106:-226.484,0,-231.792	0/1:198:101,96:101:3571:96:3409:-247.402,0,-261.978	0/1:103:56,47:56:2008:47:1688:-121.201,0,-149.987	0/1:185:89,96:89:3095:96:3420:-252.324,0,-223.088	0/1:197:64,133:64:2287:133:4704:-364.221,0,-146.788	0/0:341:341,0:341:12040:0:0:0,-102.6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chr10	3273480	.	T	C	169665	PASS	AB=0.536988;ABP=66.3018;AC=139;AF=0.739362;AN=188;AO=8102;CIGAR=1X;DP=10590;DPB=10590;DPRA=28.457;EPP=17596.3;EPPR=5375.24;GTI=2;LEN=1;MEANALT=1.08602;MQM=59.9858;MQMR=59.9968;NS=94;NUMALT=1;ODDS=6.00142;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=288763;QR=88579;RO=2478;RPL=0;RPP=17596.3;RPPR=5383.92;RPR=8102;RUN=1;SAF=8102;SAP=17596.3;SAR=0;SRF=2477;SRP=5375.24;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:18,49:18:640:49:1748:-137.435,0,-37.7603	1/1:101:0,101:0:0:101:3604:-324.567,-30.404,0	1/1:214:0,214:0:0:214:7627:-686.47,-64.4204,0	0/1:260:114,146:114:4080:146:5212:-390.953,0,-289.119	0/1:46:26,20:26:916:20:712:-50.5593,0,-68.9091	0/1:41:20,21:20:712:21:740:-54.5811,0,-52.0644	0/1:167:73,94:73:2620:94:3360:-252.345,0,-185.775	0/1:168:75,93:75:2676:93:3323:-248.715,0,-190.513	0/1:128:65,62:65:2336:62:2209:-160.603,0,-172.027	0/1:99:48,51:48:1712:51:1803:-132.749,0,-124.564	0/1:107:47,60:47:1679:60:2113:-158.227,0,-119.186	0/1:124:63,61:63:2255:61:2176:-158.779,0,-165.876	1/1:92:0,92:0:0:92:3244:-292.183,-27.6948,0	1/1:76:0,76:0:0:76:2710:-244.142,-22.8783,0	1/1:84:1,83:1:36:83:2924:-259.797,-21.6882,0	1/1:76:0,76:0:0:76:2707:-243.874,-22.8783,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:53:23,30:23:824:30:1080:-81.5587,0,-58.5287	0/1:160:90,70:90:3228:70:2504:-177.448,0,-242.577	0/1:204:84,120:84:2977:120:4300:-325.766,0,-206.753	0/1:94:55,39:55:1968:39:1384:-96.562,0,-149.098	1/1:149:0,149:0:0:149:5328:-479.654,-44.8535,0	1/1:48:2,46:2:72:46:1631:-140.241,-7.61272,0	0/1:86:34,52:34:1212:52:1848:-140.712,0,-83.4977	1/1:276:2,273:2:72:273:9722:-868.099,-76.3064,0	1/1:320:0,320:0:0:320:11393:-1025.07,-96.3296,0	0/1:39:16,23:16:572:23:810:-61.4788,0,-40.0733	0/1:326:145,181:145:5212:181:6480:-485.149,0,-371.08	0/1:123:55,68:55:1972:68:2428:-181.749,0,-140.728	1/1:133:0,133:0:0:133:4720:-424.944,-40.037,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:26:15,10:15:532:10:360:-24.8587,0,-40.3278	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	1/1:194:0,194:0:0:194:6889:-620.081,-58.3998,0	0/1:128:65,63:65:2336:63:2243:-163.601,0,-171.967	0/1:76:41,35:41:1468:35:1248:-89.7466,0,-109.538	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:168:76,92:76:2709:92:3292:-245.926,0,-193.48	0/1:62:26,36:26:924:36:1280:-96.8394,0,-64.8138	0/1:171:60,111:60:2144:111:3960:-305.106,0,-141.752	0/1:68:30,38:30:1076:38:1359:-102.14,0,-76.6828	1/1:84:0,84:0:0:84:3007:-270.861,-25.2865,0	0/1:118:58,60:58:2072:60:2129:-156.356,0,-151.229	1/1:145:0,145:0:0:145:5152:-463.826,-43.6494,0	0/1:233:120,113:120:4288:113:4010:-290.953,0,-315.958	1/1:100:0,100:0:0:100:3565:-321.058,-30.103,0	1/1:176:0,176:0:0:176:6280:-565.296,-52.9813,0	0/1:133:47,86:47:1653:86:3072:-236.616,0,-109.019	0/1:21:7,13:7:248:13:464:-35.7173,0,-16.2845	0/1:147:65,81:65:2332:81:2892:-216.207,0,-165.829	1/1:78:0,78:0:0:78:2778:-250.262,-23.4803,0	0/1:11:5,6:5:180:6:208:-15.7478,0,-13.2407	1/1:293:1,292:1:36:292:10416:-933.767,-84.6035,0	0/1:46:21,25:21:756:25:896:-67.113,0,-54.5198	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:20:2,18:2:72:18:640:-51.9087,0,-0.816122	0/1:105:65,40:65:2324:40:1432:-97.5694,0,-177.812	0/1:109:49,60:49:1764:60:2117:-157.985,0,-126.231	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:215:84,131:84:2996:131:4695:-357.988,0,-205.151	1/1:191:1,190:1:36:190:6756:-604.522,-53.8985,0	0/1:56:28,28:28:996:28:992:-72.7367,0,-73.0972	1/1:155:1,154:1:36:154:5512:-492.608,-43.0614,0	0/1:223:108,112:108:3842:112:3992:-292.844,0,-279.388	1/1:224:3,221:3:108:221:7884:-699.515,-57.3556,0	1/1:69:0,69:0:0:69:2450:-220.754,-20.7711,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	1/1:168:1,167:1:36:167:5929:-530.117,-46.9748,0	1/1:95:0,95:0:0:95:3388:-305.136,-28.5979,0	1/1:252:0,252:0:0:252:8972:-807.41,-75.8596,0	1/1:173:0,173:0:0:173:6184:-556.659,-52.0782,0	1/1:120:1,119:1:36:119:4232:-377.465,-32.5253,0	1/1:157:1,156:1:36:156:5580:-498.725,-43.6634,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:150:0,150:0:0:150:5350:-481.635,-45.1545,0	0/1:145:64,81:64:2265:81:2888:-216.508,0,-160.462	0/1:183:83,100:83:2976:100:3548:-264.443,0,-212.984	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:88:0,88:0:0:88:3139:-282.736,-26.4906,0	1/1:70:2,68:2:72:68:2410:-210.319,-14.2354,0	0/1:112:50,62:50:1780:62:2215:-165.899,0,-126.768	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:73:32,41:32:1148:41:1464:-110.081,0,-81.6546	0/1:71:32,39:32:1148:39:1395:-104.475,0,-82.2567	0/1:76:42,34:42:1504:34:1220:-87.2285,0,-112.776	0/1:153:75,77:75:2687:77:2768:-203.244,0,-195.958	0/1:79:54,25:54:1940:25:887:-56.3667,0,-151.095	1/1:173:0,173:0:0:173:6172:-555.581,-52.0782,0	1/1:125:0,124:0:0:124:4404:-396.174,-37.3277,0
chr10	3273525	.	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chr10	3274350	.	A	T	165873	PASS	AB=0.536795;ABP=63.2541;AC=140;AF=0.744681;AN=188;AO=7878;CIGAR=1X;DP=10275;DPB=10275;DPRA=0;EPP=17075.1;EPPR=5177.63;GTI=2;LEN=1;MEANALT=1.09574;MQM=59.9963;MQMR=59.9941;NS=94;NUMALT=1;ODDS=2.5104;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281231;QR=85155;RO=2387;RPL=7873;RPP=17066.5;RPPR=5186.31;RPR=5;RUN=1;SAF=7877;SAP=17101.2;SAR=1;SRF=2386;SRP=5177.63;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:12,19:12:428:19:684:-52.5584,0,-29.5269	1/1:147:0,147:0:0:147:5228:-470.656,-44.2514,0	1/1:98:0,98:0:0:98:3477:-313.141,-29.5009,0	0/1:198:79,119:79:2817:119:4252:-323.255,0,-194.164	0/1:86:54,32:54:1944:32:1118:-75.0349,0,-149.347	0/1:77:32,45:32:1118:45:1608:-121.831,0,-77.7442	0/1:146:63,83:63:2241:83:2958:-222.502,0,-158.002	0/1:159:73,86:73:2620:86:3092:-230.643,0,-188.183	0/1:83:25,58:25:896:58:2068:-161.405,0,-55.9749	0/1:93:38,55:38:1356:55:1957:-148.408,0,-94.3447	0/1:58:29,29:29:1032:29:1040:-76.4546,0,-75.7337	0/1:64:34,30:34:1212:30:1072:-77.5265,0,-90.1204	1/1:75:0,75:0:0:75:2685:-241.893,-22.5773,0	1/1:96:0,95:0:0:95:3402:-306.035,-28.5979,0	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	1/1:57:0,57:0:0:57:2026:-182.611,-17.1587,0	1/1:65:0,65:0:0:65:2327:-209.689,-19.567,0	1/1:60:0,60:0:0:60:2123:-191.336,-18.0618,0	0/1:28:8,20:8:288:20:720:-56.6999,0,-17.8386	0/1:193:106,87:106:3785:87:3112:-222.208,0,-282.735	0/1:139:52,87:52:1856:87:3087:-236.214,0,-125.477	0/1:161:113,48:113:4060:48:1724:-106.98,0,-317.12	1/1:95:0,95:0:0:95:3407:-306.843,-28.5979,0	1/1:137:7,130:7:237:130:4652:-397.182,-19.5821,0	0/1:57:27,30:27:957:30:1059:-78.462,0,-69.2852	1/1:447:0,447:0:0:447:15899:-1430.6,-134.56,0	1/1:195:0,195:0:0:195:6980:-628.264,-58.7009,0	0/1:43:17,26:17:608:26:936:-71.6152,0,-42.1077	0/1:332:142,189:142:5081:189:6747:-507.342,0,-357.471	0/1:194:89,105:89:3192:105:3757:-279.928,0,-229.103	1/1:166:0,166:0:0:166:5933:-534.078,-49.971,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:25:12,13:12:417:13:468:-34.9339,0,-30.3345	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:217:0,216:0:0:216:7683:-691.145,-65.0225,0	0/1:190:85,105:85:3044:105:3767:-282.032,0,-216.994	0/1:63:34,29:34:1224:29:1044:-75.3099,0,-91.5022	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:160:75,85:75:2673:85:3031:-224.855,0,-192.649	0/1:23:7,16:7:252:16:557:-43.5319,0,-16.1053	0/1:151:47,104:47:1680:104:3725:-289.993,0,-106.032	0/1:71:36,35:36:1296:35:1217:-88.4554,0,-95.5708	1/1:71:0,71:0:0:71:2528:-227.769,-21.3731,0	0/1:105:39,66:39:1392:66:2325:-177.899,0,-93.9709	1/1:141:0,141:0:0:141:5044:-454.106,-42.4452,0	0/1:158:88,70:88:3136:70:2485:-176.339,0,-234.904	1/1:133:1,132:1:36:132:4702:-419.742,-36.4387,0	1/1:154:0,154:0:0:154:5526:-497.464,-46.3586,0	0/1:142:50,92:50:1773:92:3300:-254.472,0,-117.105	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/1:144:73,71:73:2608:71:2552:-186.582,0,-191.62	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:31:4,27:4:144:27:964:-77.7449,0,-3.98169	1/1:131:0,131:0:0:131:4661:-419.653,-39.4349,0	0/1:42:21,21:21:703:21:749:-55.0923,0,-50.9351	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/1:76:35,41:35:1241:41:1476:-110.258,0,-89.1142	0/1:153:70,83:70:2492:83:2968:-221.296,0,-178.476	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:216:113,103:113:4021:103:3678:-266.2,0,-297.057	1/1:307:0,307:0:0:307:10979:-988.004,-92.4162,0	0/1:96:40,56:40:1428:56:1996:-151.014,0,-99.9187	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0	0/1:187:78,109:78:2773:109:3873:-292.473,0,-193.518	1/1:99:1,98:1:36:98:3484:-310.172,-26.2037,0	1/1:24:0,24:0:0:24:851:-76.9095,-7.22472,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:84:0,84:0:0:84:2988:-269.151,-25.2865,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:146:1,145:1:36:145:5168:-461.661,-40.3521,0	1/1:63:0,63:0:0:63:2220:-200.063,-18.9649,0	1/1:222:0,221:0:0:221:7905:-711.114,-66.5276,0	1/1:269:0,269:0:0:269:9588:-862.847,-80.9771,0	1/1:192:0,192:0:0:192:6837:-615.4,-57.7978,0	1/1:138:0,138:0:0:138:4960:-446.547,-41.5421,0	1/1:37:1,36:1:36:36:1273:-111.273,-7.53984,0	1/1:156:5,151:5:180:151:5424:-471.735,-30.4086,0	0/1:110:44,66:44:1549:66:2349:-178.554,0,-106.586	0/1:218:76,142:76:2724:142:5084:-392.079,0,-179.779	1/1:130:0,130:0:0:130:4649:-418.572,-39.1339,0	1/1:64:0,63:0:0:63:2251:-202.532,-18.9649,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	0/1:184:106,78:106:3804:78:2800:-196.85,0,-287.167	1/1:44:1,43:1:32:43:1521:-133.981,-10.046,0	0/1:88:47,41:47:1668:41:1459:-105.115,0,-123.917	0/1:66:35,31:35:1248:31:1116:-80.8837,0,-92.7569	0/1:45:24,20:24:856:20:708:-50.4407,0,-63.7561	0/1:132:76,56:76:2724:56:2003:-140.807,0,-205.667	0/1:63:42,20:42:1485:20:711:-45.2922,0,-114.919	1/1:129:0,128:0:0:128:4529:-407.416,-38.5318,0	1/1:110:0,108:0:0:108:3884:-349.393,-32.5112,0
chr10	3328928	.	C	A	72644.3	PASS	AB=0.496248;ABP=4.06959;AC=47;AF=0.25;AN=188;AO=4312;CIGAR=1X;DP=16779;DPB=16779;DPRA=1.51257;EPP=9366.4;EPPR=27059.6;GTI=0;LEN=1;MEANALT=1.05172;MQM=59.9796;MQMR=59.9384;NS=94;NUMALT=1;ODDS=3.56426;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153985;QR=445612;RO=12460;RPL=0;RPP=9366.4;RPPR=27059.6;RPR=4312;RUN=1;SAF=4312;SAP=9366.4;SAR=0;SRF=12460;SRP=27059.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:40,30:40:1424:30:1072:-75.7195,0,-107.382	0/0:303:303,0:303:10805:0:0:0,-91.2121,-972.351	0/0:278:277,1:277:9908:1:32:0,-80.487,-888.452	0/1:420:182,234:182:6484:234:8370:-627.722,0,-457.508	0/1:174:65,109:65:2340:109:3924:-300.971,0,-158.48	0/1:93:41,52:41:1463:52:1872:-140.763,0,-103.967	0/1:219:118,101:118:4240:101:3586:-257.02,0,-315.852	0/1:338:192,146:192:6844:146:5240:-369.986,0,-514.211	0/1:218:99,119:99:3552:119:4241:-316.243,0,-253.635	0/1:171:97,74:97:3460:74:2645:-186.816,0,-260.137	0/1:74:45,29:45:1616:29:1044:-71.9986,0,-123.454	0/1:118:59,59:59:2108:59:2098:-153.497,0,-154.467	0/0:109:109,0:109:3890:0:0:0,-32.8123,-350.293	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.341	0/0:137:137,0:137:4920:0:0:0,-41.2411,-442.913	0/0:87:87,0:87:3092:0:0:0,-26.1896,-278.505	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.789	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.032	0/1:47:27,20:27:963:20:720:-50.9804,0,-72.8356	0/1:521:261,260:261:9349:260:9219:-672.843,0,-684.531	0/1:308:150,158:150:5357:158:5637:-414.733,0,-389.537	0/1:235:82,153:82:2928:153:5446:-419.525,0,-193.013	0/0:146:146,0:146:5216:0:0:0,-43.9504,-469.579	0/0:321:317,4:317:11356:4:144:0,-83.317,-1007.82	0/1:202:99,102:99:3560:102:3642:-267.116,0,-259.727	0/0:442:442,0:442:15828:0:0:0,-133.055,-1424.21	0/0:599:598,1:598:21356:1:32:0,-177.118,-1918.26	0/1:46:28,18:28:999:18:644:-44.4432,0,-76.3771	0/1:536:251,285:251:8984:285:10176:-754.414,0,-647.187	0/1:222:131,91:131:4696:91:3249:-225.797,0,-355.971	0/0:223:223,0:223:7984:0:0:0,-67.1297,-718.496	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.243	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4685	0/0:288:288,0:288:10311:0:0:0,-86.6966,-927.906	0/1:273:156,116:156:5588:116:4145:-290.992,0,-420.797	0/1:71:29,42:29:1036:42:1504:-114.279,0,-72.1808	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:285:153,132:153:5453:132:4706:-337.905,0,-404.947	0/1:54:23,31:23:816:31:1112:-84.1357,0,-57.5061	0/1:256:124,132:124:4419:132:4689:-345.104,0,-320.82	0/1:114:60,54:60:2152:54:1944:-140.919,0,-159.612	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/1:269:136,133:136:4868:133:4757:-347.309,0,-357.296	0/0:315:314,1:314:11238:1:36:0,-91.2272,-1007.69	0/1:427:239,188:239:8528:188:6692:-473.815,0,-638.983	0/0:190:190,0:190:6804:0:0:0,-57.1957,-612.427	0/0:216:216,0:216:7717:0:0:0,-65.0225,-694.564	0/1:269:122,147:122:4365:147:5240:-390.76,0,-312.045	0/1:16:11,5:11:392:5:180:-11.7356,0,-30.8036	0/1:286:162,124:162:5808:124:4425:-312.308,0,-436.729	0/0:86:85,1:85:3024:1:36:0,-22.2903,-268.794	0/1:34:17,17:17:608:17:608:-44.817,0,-44.817	0/0:239:239,0:239:8552:0:0:0,-71.9462,-769.653	0/1:125:57,68:57:2032:68:2436:-181.867,0,-145.524	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:37:22,15:22:784:15:540:-37.7984,0,-59.7458	0/1:122:54,68:54:1932:68:2432:-182.409,0,-137.423	0/1:141:60,81:60:2156:81:2904:-219.148,0,-151.862	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:355:179,176:179:6412:176:6275:-457.974,0,-470.297	0/0:494:493,1:493:17637:1:36:0,-145.111,-1583.33	0/1:120:87,33:87:3108:33:1188:-71.105,0,-243.824	0/0:134:133,1:133:4776:1:36:0,-36.7397,-426.397	0/1:292:156,136:156:5600:136:4865:-350.101,0,-416.219	0/0:197:197,0:197:7009:0:0:0,-59.3029,-630.876	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:165:164,1:164:5872:1:36:0,-46.0727,-524.988	0/0:103:103,0:103:3673:0:0:0,-31.0061,-330.773	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/0:137:137,0:137:4900:0:0:0,-41.2411,-441.148	0/0:151:151,0:151:5384:0:0:0,-45.4555,-484.685	0/0:306:305,0:305:10936:0:0:0,-91.8141,-983.815	0/0:462:461,1:461:16462:1:36:0,-135.478,-1477.25	0/0:215:215,0:215:7712:0:0:0,-64.7214,-694.087	0/0:209:208,1:208:7464:1:36:0,-59.318,-668.094	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:308:308,0:308:11005:0:0:0,-92.7172,-990.346	0/1:201:86,115:86:3073:115:4117:-310.206,0,-216.278	0/1:333:171,162:171:6086:162:5759:-418.182,0,-447.6	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.655	0/0:101:101,0:101:3604:0:0:0,-30.404,-324.565	0/0:120:120,0:120:4279:0:0:0,-36.1236,-385.286	0/1:169:79,90:79:2832:90:3225:-239.596,0,-204.244	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.085	0/1:70:32,38:32:1144:38:1364:-101.989,0,-82.1082	0/1:94:60,34:60:2140:34:1224:-82.1702,0,-164.564	0/1:26:13,13:13:468:13:464:-34.2707,0,-34.6329	0/1:81:48,33:48:1724:33:1184:-82.4849,0,-131.057	0/1:80:27,53:27:972:53:1893:-146.564,0,-63.7155	0/0:189:189,0:189:6744:0:0:0,-56.8947,-607.033	0/0:173:172,1:172:6168:1:36:0,-48.4799,-551.614
chr10	3328961	.	G	A	264913	PASS	AB=0.51023;ABP=10.9185;AC=141;AF=0.75;AN=188;AO=12641;CIGAR=1X;DP=16912;DPB=16912;DPRA=0;EPP=27417.9;EPPR=9231.8;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9226;MQMR=59.9869;NS=94;NUMALT=1;ODDS=5.73676;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=450823;QR=152533;RO=4266;RPL=12636;RPP=27409.2;RPPR=9231.8;RPR=5;RUN=1;SAF=12640;SAP=27443.9;SAR=1;SRF=4266;SRP=9266.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:30,40:30:1080:40:1440:-108.822,0,-76.4402	1/1:303:0,303:0:0:303:10793:-971.147,-91.2121,0	1/1:277:1,276:1:36:276:9829:-880.942,-79.787,0	0/1:422:237,185:237:8513:185:6528:-460.473,0,-639.129	0/1:174:110,64:110:3930:64:2296:-154.522,0,-301.51	0/1:91:52,39:52:1872:39:1396:-98.5429,0,-141.365	0/1:221:101,120:101:3620:120:4297:-320.377,0,-259.478	0/1:337:140,196:140:4998:196:6949:-523.89,0,-348.458	0/1:221:117,104:117:4178:104:3714:-267.255,0,-309.67	0/1:170:74,96:74:2622:96:3417:-256.568,0,-185.05	0/1:74:29,45:29:1021:45:1604:-122.372,0,-69.924	0/1:118:58,60:58:2076:60:2141:-157.434,0,-151.589	1/1:108:0,108:0:0:108:3846:-346.329,-32.5112,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:135:0,135:0:0:135:4807:-432.747,-40.6391,0	1/1:87:0,87:0:0:87:3120:-281.025,-26.1896,0	1/1:75:0,75:0:0:75:2692:-242.504,-22.5773,0	1/1:76:0,76:0:0:76:2683:-241.71,-22.8783,0	0/1:45:20,25:20:716:25:885:-66.4183,0,-51.2214	0/1:525:256,269:256:9113:269:9569:-703.119,0,-662.102	0/1:309:156,153:156:5539:153:5492:-401.379,0,-405.616	0/1:235:152,83:152:5416:83:2969:-196.7,0,-416.824	1/1:145:0,145:0:0:145:5132:-462.018,-43.6494,0	1/1:325:4,321:4:144:321:11461:-1017.26,-84.5211,0	0/1:200:102,98:102:3649:98:3490:-254.095,0,-268.407	1/1:455:0,455:0:0:455:16275:-1464.4,-136.969,0	1/1:606:0,606:0:0:606:21590:-1942.46,-182.424,0	0/1:47:18,29:18:648:29:1025:-78.4123,0,-44.5035	0/1:539:283,256:283:10152:256:9088:-655.636,0,-751.349	0/1:221:89,132:89:3200:132:4713:-357.802,0,-221.69	1/1:221:0,221:0:0:221:7907:-711.564,-66.5276,0	1/1:40:0,40:0:0:40:1425:-128.545,-12.0412,0	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	1/1:24:0,24:0:0:24:860:-77.7191,-7.22472,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:26:0,26:0:0:26:917:-82.8439,-7.82678,0	1/1:295:1,294:1:32:294:10488:-940.619,-85.6045,0	0/1:272:113,159:113:4056:159:5679:-429.345,0,-283.346	0/1:72:42,30:42:1508:30:1076:-75.4787,0,-114.338	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:291:132,159:132:4669:159:5646:-420.501,0,-332.768	0/1:54:31,23:31:1101:23:809:-56.8727,0,-83.1427	0/1:259:129,127:129:4602:127:4508:-328.461,0,-336.919	0/1:113:54,59:54:1935:59:2094:-154.692,0,-140.409	1/1:109:0,109:0:0:109:3916:-352.632,-32.8123,0	0/1:270:129,141:129:4628:141:5061:-374.353,0,-335.404	1/1:321:0,321:0:0:321:11490:-1033.96,-96.6306,0	0/1:432:187,245:187:6690:245:8701:-652.981,0,-472.128	1/1:189:0,189:0:0:189:6711:-603.438,-56.8947,0	1/1:217:0,217:0:0:217:7800:-702.008,-65.3235,0	0/1:270:144,126:144:5149:126:4532:-326.767,0,-382.27	0/1:18:5,13:5:180:13:464:-36.6743,0,-11.1335	0/1:284:122,162:122:4331:162:5757:-432.74,0,-304.463	1/1:87:1,86:1:36:86:3077:-273.558,-22.5913,0	0/1:35:18,17:18:633:17:612:-44.875,0,-46.759	1/1:248:0,248:0:0:248:8882:-799.359,-74.6554,0	0/1:126:67,59:67:2393:59:2106:-151.879,0,-177.696	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:38:15,23:15:525:23:828:-63.405,0,-36.1389	0/1:124:68,56:68:2440:56:1989:-141.946,0,-182.527	0/1:140:80,60:80:2868:60:2148:-151.443,0,-216.21	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:356:176,180:176:6324:180:6357:-465.051,0,-462.08	1/1:508:1,507:1:36:507:18115:-1626.33,-149.325,0	0/1:119:33,86:33:1169:86:3077:-241.334,0,-69.6927	1/1:132:1,131:1:36:131:4682:-417.94,-36.1377,0	0/1:298:132,165:132:4733:165:5856:-437.381,0,-336.358	1/1:204:0,204:0:0:204:7241:-651.74,-61.4101,0	1/1:20:0,20:0:0:20:686:-62.0557,-6.0206,0	1/1:165:0,165:0:0:165:5736:-516.351,-49.67,0	1/1:106:0,106:0:0:106:3808:-342.916,-31.9092,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:137:0,137:0:0:137:4890:-440.246,-41.2411,0	1/1:151:0,151:0:0:151:5379:-484.22,-45.4555,0	1/1:303:0,303:0:0:303:10851:-976.486,-91.2121,0	1/1:464:0,464:0:0:464:16494:-1484.1,-139.678,0	1/1:218:1,217:1:36:217:7739:-692.926,-62.0263,0	1/1:213:0,213:0:0:213:7630:-686.621,-64.1194,0	1/1:21:0,21:0:0:21:748:-67.6447,-6.32163,0	1/1:311:0,311:0:0:311:11127:-1001.32,-93.6203,0	0/1:203:114,89:114:4104:89:3196:-226.742,0,-308.434	0/1:341:164,177:164:5851:177:6307:-465.069,0,-424.047	1/1:121:0,121:0:0:121:4303:-387.442,-36.4246,0	1/1:104:0,104:0:0:104:3702:-333.381,-31.3071,0	1/1:124:0,124:0:0:124:4426:-398.509,-37.3277,0	0/1:170:89,81:89:3185:81:2916:-211.499,0,-235.697	1/1:48:0,48:0:0:48:1709:-154.093,-14.4494,0	0/1:70:37,33:37:1332:33:1179:-85.2757,0,-99.1103	0/1:93:32,61:32:1152:61:2181:-168.123,0,-75.9944	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:80:32,48:32:1148:48:1728:-131.718,0,-79.5474	0/1:79:53,26:53:1904:26:936:-60.7781,0,-147.856	1/1:193:0,193:0:0:193:6929:-623.662,-58.0988,0	1/1:175:0,175:0:0:175:6251:-562.682,-52.6803,0
chr10	3329009	.	A	T	250484	PASS	AB=0.484834;ABP=19.6084;AC=140;AF=0.744681;AN=188;AO=11432;CIGAR=1X;DP=15748;DPB=15748;DPRA=0;EPP=22101;EPPR=8300.84;GTI=0;LEN=1;MEANALT=1.11702;MQM=59.971;MQMR=60;NS=94;NUMALT=1;ODDS=6.06167;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=408077;QR=153791;RO=4303;RPL=11109;RPP=22101;RPPR=8300.84;RPR=323;RUN=1;SAF=0;SAP=24827.3;SAR=11432;SRF=0;SRP=9346.86;SRR=4303;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:29,38:29:1040:38:1341:-100.814,0,-73.7454	1/1:241:0,241:0:0:241:8567:-771.017,-72.5482,0	1/1:188:0,188:0:0:188:6714:-604.334,-56.5936,0	0/1:278:122,156:122:4366:156:5574:-418.097,0,-309.427	0/1:108:64,44:64:2274:44:1564:-108.54,0,-172.41	0/1:96:44,52:44:1576:52:1863:-139.05,0,-113.233	0/1:276:124,152:124:4435:152:5414:-404.308,0,-316.237	0/1:238:97,141:97:3450:141:5040:-382.102,0,-239.068	0/1:187:94,93:94:3348:93:3328:-243.444,0,-245.243	0/1:193:109,84:109:3892:84:2998:-211.947,0,-292.376	0/1:183:93,90:93:3320:90:3207:-233.765,0,-243.93	0/1:127:65,62:65:2332:62:2220:-161.834,0,-171.909	1/1:107:0,107:0:0:107:3832:-345.077,-32.2102,0	1/1:178:0,178:0:0:178:6338:-570.514,-53.5833,0	1/1:127:0,126:0:0:126:4499:-404.719,-37.9298,0	1/1:98:0,97:0:0:97:3483:-313.318,-29.1999,0	1/1:126:0,126:0:0:126:4486:-403.881,-37.9298,0	1/1:74:0,74:0:0:74:2647:-238.475,-22.2762,0	0/1:96:64,32:64:2291:32:1143:-74.2805,0,-177.552	0/1:385:204,181:204:7304:181:6460:-465.592,0,-541.514	0/1:229:101,128:101:3603:128:4556:-341.273,0,-255.541	0/1:199:134,65:134:4796:65:2324:-149.515,0,-371.891	1/1:223:1,222:1:36:222:7940:-711.027,-63.5314,0	1/1:239:11,226:11:396:226:8073:-690.608,-35.7043,0	0/1:148:66,82:66:2356:82:2919:-218.393,0,-167.747	1/1:322:0,322:0:0:322:11417:-1027.41,-96.9317,0	1/1:423:2,421:2:72:421:15017:-1344.32,-120.499,0	0/1:51:31,20:31:1116:20:720:-49.7762,0,-85.3992	0/1:371:188,182:188:6739:182:6511:-474.333,0,-494.842	0/1:225:116,109:116:4149:109:3863:-280.137,0,-305.86	1/1:208:0,208:0:0:208:7422:-668.016,-62.6142,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:37:18,19:18:644:19:680:-50.3911,0,-47.1525	1/1:15:0,15:0:0:15:535:-48.4843,-4.51545,0	1/1:36:0,36:0:0:36:1287:-116.133,-10.8371,0	1/1:14:0,14:0:0:14:496:-44.9739,-4.21442,0	1/1:308:0,308:0:0:308:11011:-990.884,-92.7172,0	0/1:304:177,127:177:6333:127:4512:-314.736,0,-478.547	0/1:132:78,53:78:2788:53:1895:-131.033,0,-211.366	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/1:241:132,109:132:4711:109:3884:-277.208,0,-351.602	0/1:83:44,39:44:1584:39:1404:-101.674,0,-117.866	0/1:237:111,126:111:3968:126:4487:-332.655,0,-285.967	0/1:124:64,60:64:2296:60:2152:-156.619,0,-169.573	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	0/1:196:92,104:92:3300:104:3728:-276.718,0,-238.217	1/1:165:0,165:0:0:165:5899:-531.019,-49.67,0	0/1:238:127,111:127:4544:111:3968:-285.666,0,-337.482	1/1:226:0,226:0:0:226:8070:-726.32,-68.0328,0	1/1:330:3,327:3:104:327:11684:-1041.72,-89.6371,0	0/1:302:134,168:134:4792:168:6020:-450.993,0,-340.526	0/1:28:18,10:18:640:10:360:-24.3155,0,-49.5005	0/1:301:141,160:141:5029:160:5717:-424.036,0,-362.147	1/1:108:0,108:0:0:108:3876:-349.033,-32.5112,0	0/1:39:25,14:25:896:14:500:-33.596,0,-69.2202	1/1:217:0,217:0:0:217:7740:-696.634,-65.3235,0	0/1:74:31,43:31:1100:43:1536:-116.257,0,-77.0341	0/1:24:7,17:7:252:17:608:-47.8273,0,-15.8042	0/1:54:30,24:30:1068:24:856:-61.1055,0,-80.1764	0/1:187:97,90:97:3450:90:3212:-232.997,0,-254.421	0/1:202:104,98:104:3728:98:3517:-255.931,0,-274.913	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:242:138,104:138:4940:104:3708:-261.074,0,-371.901	1/1:317:0,317:0:0:317:11313:-1018.05,-95.4265,0	0/1:81:36,45:36:1279:45:1600:-119.907,0,-91.029	1/1:132:0,132:0:0:132:4719:-424.868,-39.736,0	0/1:297:164,133:164:5823:133:4752:-338.423,0,-434.78	1/1:244:2,241:2:68:241:8624:-769.689,-67.0458,0	1/1:92:0,92:0:0:92:3277:-295.15,-27.6948,0	1/1:124:0,124:0:0:124:4410:-397.072,-37.3277,0	1/1:138:0,137:0:0:137:4906:-441.33,-41.2411,0	1/1:62:0,62:0:0:62:2190:-197.175,-18.6639,0	1/1:184:0,184:0:0:184:6542:-588.867,-55.3895,0	1/1:132:0,130:0:0:130:4625:-416.055,-39.1339,0	1/1:417:1,416:1:36:416:14837:-1331.45,-121.931,0	1/1:209:0,209:0:0:209:7470:-672.338,-62.9153,0	1/1:239:0,239:0:0:239:8549:-769.407,-71.9462,0	1/1:159:3,156:3:108:156:5569:-491.258,-37.7886,0	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:126:2,124:2:72:124:4427:-391.765,-31.0931,0	0/1:131:72,59:72:2568:59:2108:-150.554,0,-191.935	0/1:284:117,167:117:4200:167:5965:-451.463,0,-292.687	1/1:136:1,135:1:36:135:4788:-427.481,-37.3418,0	1/1:116:0,116:0:0:116:4164:-374.886,-34.9195,0	1/1:148:0,146:0:0:146:5217:-469.35,-43.9504,0	0/1:222:132,89:132:4736:89:3188:-220.254,0,-359.51	1/1:64:0,64:0:0:64:2282:-205.642,-19.2659,0	0/1:134:73,61:73:2620:61:2155:-153.648,0,-195.709	0/1:120:62,58:62:2203:58:2076:-150.986,0,-162.411	0/1:151:81,70:81:2883:70:2507:-180.427,0,-214.251	0/1:251:144,107:144:5125:107:3832:-269.518,0,-385.835	0/1:123:81,42:81:2904:42:1496:-97.9079,0,-224.569	1/1:127:0,127:0:0:127:4532:-408.048,-38.2308,0	1/1:149:0,149:0:0:149:5343:-481.001,-44.8535,0
chr10	3329015	.	TAC	AAC	242492	PASS	AB=0.476443;ABP=43.9332;AC=140;AF=0.744681;AN=188;AO=11538;CIGAR=1X2M;DP=16034;DPB=16034;DPRA=0;EPP=24780.3;EPPR=9441.55;GTI=0;LEN=1;MEANALT=1.43617;MQM=59.9757;MQMR=59.9955;NS=94;NUMALT=1;ODDS=3.20044;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=412975;QR=155264;RO=4450;RPL=11506;RPP=24780.3;RPPR=9441.55;RPR=32;RUN=1;SAF=0;SAP=25057.5;SAR=11538;SRF=0;SRP=9666.06;SRR=4450;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:29,39:29:1038:39:1400:-105.759,0,-73.2644	1/1:246:1,244:1:21:244:8731:-783.586,-71.9373,0	1/1:193:0,192:0:0:192:6852:-616.388,-57.7978,0	0/1:279:126,151:126:4370:151:5383:-400.856,0,-309.733	0/1:111:66,45:66:2320:45:1612:-111.956,0,-175.646	0/1:100:45,55:45:1567:55:1975:-147.922,0,-111.213	0/1:282:131,151:131:4572:151:5424:-403.397,0,-326.76	0/1:247:104,143:104:3629:143:5136:-388.025,0,-252.462	0/1:192:98,94:98:3434:94:3343:-243.287,0,-251.478	0/1:192:111,81:111:3874:81:2875:-201.182,0,-291.06	0/1:184:96,88:96:3342:88:3164:-229.594,0,-245.61	0/1:131:69,62:69:2434:62:2215:-160.179,0,-179.88	1/1:107:0,107:0:0:107:3848:-346.514,-32.2102,0	1/1:176:0,176:0:0:176:6313:-568.259,-52.9813,0	1/1:131:0,130:0:0:130:4642:-417.692,-39.1339,0	1/1:100:0,99:0:0:99:3538:-318.267,-29.802,0	1/1:125:0,124:0:0:124:4438:-399.34,-37.3277,0	1/1:75:0,74:0:0:74:2655:-238.836,-22.2762,0	0/1:99:65,34:65:2292:34:1224:-80.6651,0,-176.738	0/1:394:207,187:207:7262:187:6695:-484.02,0,-535.04	0/1:235:105,130:105:3655:130:4638:-346.838,0,-258.416	0/1:206:136,66:136:4748:66:2372:-152.569,0,-366.32	1/1:224:0,224:0:0:224:8020:-721.82,-67.4307,0	1/1:240:12,228:12:417:228:8179:-698.259,-34.387,0	0/1:152:68,83:68:2381:83:2944:-219.378,0,-168.73	1/1:327:0,327:0:0:327:11726:-1055.2,-98.4368,0	1/1:429:3,426:3:92:426:15285:-1366.67,-120.558,0	0/1:54:33,18:33:1127:18:644:-42.5786,0,-86.0179	0/1:373:191,182:191:6676:182:6521:-474.685,0,-488.648	0/1:231:120,109:120:4157:109:3873:-279.467,0,-305.025	1/1:218:0,217:0:0:217:7736:-696.008,-65.3235,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:38:18,20:18:642:20:712:-52.9675,0,-46.6711	1/1:17:0,17:0:0:17:607:-54.9616,-5.11751,0	1/1:37:0,37:0:0:37:1314:-118.56,-11.1381,0	1/1:13:0,13:0:0:13:464:-42.0971,-3.91339,0	1/1:311:0,311:0:0:311:11135:-1002.03,-93.6203,0	0/1:312:183,128:183:6373:128:4588:-319.104,0,-479.694	0/1:134:79,55:79:2790:55:1980:-138.136,0,-211.003	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/1:243:139,104:139:4781:104:3728:-262.57,0,-357.307	0/1:87:45,42:45:1584:42:1512:-110.185,0,-116.659	0/1:242:116,126:116:3994:126:4494:-331.777,0,-286.806	0/1:128:68,60:68:2340:60:2156:-155.775,0,-172.321	1/1:83:0,82:0:0:82:2936:-264.115,-24.6845,0	0/1:199:95,104:95:3337:104:3716:-274.734,0,-240.646	1/1:168:0,168:0:0:168:6030:-542.801,-50.573,0	0/1:245:132,112:132:4536:112:3997:-286.228,0,-334.669	1/1:226:0,225:0:0:225:8052:-724.339,-67.7318,0	1/1:338:3,334:3:99:334:11962:-1067.21,-92.5017,0	0/1:310:134,175:134:4715:175:6244:-468.677,0,-331.137	0/1:31:21,10:21:718:10:360:-23.4124,0,-55.6044	0/1:308:144,163:144:5048:163:5833:-432.414,0,-361.806	1/1:109:1,108:1:20:108:3876:-347.034,-30.8123,0	0/1:41:26,15:26:922:15:540:-36.5943,0,-70.9554	1/1:220:0,220:0:0:220:7879:-709.133,-66.2266,0	0/1:76:34,42:34:1172:42:1499:-112.326,0,-82.9025	0/1:24:8,16:8:281:16:576:-44.9503,0,-18.4056	0/1:55:31,24:31:1046:24:864:-61.5259,0,-77.8843	0/1:191:101,90:101:3502:90:3228:-233.231,0,-257.897	0/1:200:103,94:103:3628:94:3369:-243.763,0,-267.065	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:254:146,106:146:5086:106:3797:-265.708,0,-381.675	1/1:318:1,316:1:20:316:11306:-1015.34,-93.7065,0	0/1:82:37,45:37:1293:45:1616:-121.046,0,-91.9837	1/1:136:0,136:0:0:136:4846:-436.291,-40.9401,0	0/1:304:171,133:171:5937:133:4754:-336.494,0,-442.937	1/1:252:2,250:2:57:250:8952:-800.243,-70.4463,0	1/1:92:0,91:0:0:91:3254:-292.721,-27.3937,0	1/1:125:0,125:0:0:125:4460:-401.57,-37.6288,0	1/1:142:0,142:0:0:142:5091:-458.332,-42.7463,0	1/1:61:0,60:0:0:60:2142:-192.796,-18.0618,0	1/1:190:0,189:0:0:189:6746:-606.854,-56.8947,0	1/1:132:0,131:0:0:131:4672:-420.281,-39.4349,0	1/1:422:1,421:1:36:421:15041:-1349.75,-123.436,0	1/1:212:0,211:0:0:211:7558:-679.891,-63.5173,0	1/1:239:1,238:1:20:238:8540:-766.595,-69.9462,0	1/1:163:3,160:3:106:160:5685:-501.878,-39.1788,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:129:2,127:2:72:127:4538:-401.748,-31.9961,0	0/1:134:75,59:75:2626:59:2116:-150.371,0,-196.249	0/1:295:126,169:126:4392:169:6058:-456.516,0,-306.655	1/1:138:1,137:1:36:137:4911:-438.541,-37.9439,0	1/1:118:0,117:0:0:117:4200:-377.82,-35.2205,0	1/1:145:0,143:0:0:143:5132:-461.715,-43.0473,0	0/1:224:135,87:135:4791:87:3112:-213.224,0,-364.269	1/1:64:0,63:0:0:63:2264:-203.771,-18.9649,0	0/1:136:74,62:74:2589:62:2224:-159.483,0,-192.316	0/1:122:63,58:63:2222:58:2069:-149.694,0,-163.459	0/1:153:82,71:82:2865:71:2556:-184.232,0,-212.028	0/1:255:148,105:148:5223:105:3761:-262.241,0,-393.765	0/1:125:83,42:83:2885:42:1504:-98.0258,0,-222.258	1/1:128:0,128:0:0:128:4583:-412.633,-38.5318,0	1/1:150:0,150:0:0:150:5387:-484.956,-45.1545,0
chr10	3358339	.	T	C	45474.9	PASS	AB=0.327349;ABP=1113.48;AC=52;AF=0.276596;AN=188;AO=2643;CIGAR=1X;DP=9438;DPB=9438;DPRA=1.77568;EPP=5742.21;EPPR=14341.9;GTI=3;LEN=1;MEANALT=1.0566;MQM=59.9796;MQMR=59.9959;NS=94;NUMALT=1;ODDS=2.72125;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93979;QR=239079;RO=6790;RPL=2642;RPP=5733.53;RPPR=14677.9;RPR=1;RUN=1;SAF=2642;SAP=5733.53;SAR=1;SRF=6745;SRP=14359;SRR=45;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0751	0/0:103:102,1:102:3582:1:36:0,-27.4078,-318.989	0/0:126:126,0:126:4444:0:0:0,-37.9298,-400.136	0/0:213:213,0:213:7531:0:0:0,-64.1194,-677.838	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	0/1:21:18,3:18:644:3:108:-3.75354,0,-51.969	0/1:110:78,32:78:2741:32:1132:-69.0753,0,-213.818	0/0:98:98,0:98:3472:0:0:0,-29.5009,-312.692	0/0:44:44,0:44:1534:0:0:0,-13.2453,-138.348	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/1:143:32,111:32:1115:111:3947:-312.373,0,-57.6092	0/0:73:73,0:73:2591:0:0:0,-21.9752,-233.439	0/0:144:144,0:144:5086:0:0:0,-43.3483,-457.885	0/0:30:30,0:30:1049:0:0:0,-9.0309,-94.7182	0/0:71:69,2:69:2403:2:72:0,-14.5364,-209.687	0/0:44:44,0:44:1524:0:0:0,-13.2453,-137.446	0/1:24:18,6:18:633:6:201:-11.1923,0,-50.0703	0/0:26:26,0:26:911:0:0:0,-7.82678,-82.305	0/1:152:45,107:45:1563:107:3785:-295.094,0,-95.2033	0/1:149:112,37:112:3838:37:1293:-71.8155,0,-300.768	0/1:77:54,23:54:1916:23:819:-50.7222,0,-149.538	0/1:129:114,15:114:4033:15:524:-8.65677,0,-324.327	0/0:86:85,1:85:3044:1:32:0,-22.6893,-270.99	0/0:17:16,1:16:576:1:36:0,-1.51923,-48.5767	0/1:70:39,31:39:1385:31:1108:-78.9589,0,-103.875	0/0:260:259,1:259:9191:1:32:0,-75.0685,-823.968	0/1:177:143,34:143:5019:34:1212:-56.104,0,-398.578	0/0:34:34,0:34:1173:0:0:0,-10.235,-105.872	0/0:224:223,1:223:7822:1:36:0,-63.8324,-700.422	0/0:100:92,8:92:3230:8:288:0,-3.83559,-264.656	0/1:118:91,27:91:3213:27:941:-49.4801,0,-253.87	1/1:135:6,129:6:216:129:4592:-393.655,-20.8485,0	1/1:125:8,117:8:284:117:4117:-344.809,-11.7254,0	1/1:39:1,38:1:36:38:1352:-118.382,-8.1419,0	1/1:386:9,377:9:305:377:13392:-1177.31,-88.4204,0	0/0:18:18,0:18:614:0:0:0,-5.41854,-55.577	0/1:188:139,49:139:4863:49:1716:-98.1283,0,-381.234	0/1:90:80,10:80:2799:10:360:-5.6516,0,-225.056	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:92:92,0:92:3247:0:0:0,-27.6948,-292.449	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:191:130,61:130:4590:61:2168:-137.89,0,-355.771	0/1:56:32,24:32:1128:24:864:-61.2249,0,-84.9706	0/1:122:87,35:87:3049:35:1245:-75.6271,0,-237.914	0/0:98:98,0:98:3493:0:0:0,-29.5009,-314.58	0/0:62:62,0:62:2170:0:0:0,-18.6639,-195.564	0/1:245:210,35:210:7385:35:1251:-39.1419,0,-590.951	0/1:288:241,47:241:8536:47:1672:-64.0706,0,-681.553	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/1:29:23,6:23:801:6:216:-11.0606,0,-63.6768	1/1:194:7,187:7:252:187:6701:-580.136,-35.3709,0	0/1:129:99,30:99:3517:30:1067:-57.5083,0,-277.896	0/1:69:55,14:55:1938:14:500:-24.5651,0,-153.922	1/1:89:4,85:4:140:85:3026:-259.626,-13.8471,0	0/0:196:195,0:195:6795:0:0:0,-58.7008,-611.433	0/0:30:30,0:30:1034:0:0:0,-9.0309,-93.3647	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:54:41,12:41:1455:12:432:-22.9068,0,-114.931	0/0:49:49,0:49:1722:0:0:0,-14.7505,-155.261	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:296:296,0:296:10313:0:0:0,-89.1049,-928.118	0/1:76:58,17:58:2061:17:608:-32.2566,0,-162.97	0/0:13:13,0:13:445:0:0:0,-3.91339,-40.3754	0/0:100:100,0:100:3459:0:0:0,-30.103,-311.522	0/0:113:111,2:111:3930:2:68:0,-27.5587,-347.435	0/0:94:93,0:93:3207:0:0:0,-27.9958,-288.638	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/0:43:43,0:43:1504:0:0:0,-12.9443,-135.65	0/1:53:30,23:30:1068:23:810:-57.2644,0,-80.4775	1/1:189:15,174:15:525:174:6208:-511.239,-9.31662,0	0/1:124:107,17:107:3770:17:608:-17.7243,0,-302.171	0/0:156:156,0:156:5534:0:0:0,-46.9607,-498.188	0/1:131:106,24:106:3773:24:855:-37.9213,0,-300.424	0/1:125:91,34:91:3205:34:1215:-72.0278,0,-251.046	0/1:83:71,12:71:2472:12:432:-14.2357,0,-197.744	0/0:54:54,0:54:1886:0:0:0,-16.2556,-170.015	1/1:125:11,114:11:377:114:4058:-331.15,-3.37081,0	0/1:140:116,24:116:4084:24:851:-34.7653,0,-325.606	0/1:146:121,25:121:4274:25:888:-36.2886,0,-340.892	0/0:62:62,0:62:2165:0:0:0,-18.6639,-195.114	0/0:29:28,1:28:1008:1:36:0,-5.13159,-87.4381	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:55:38,17:38:1335:17:612:-38.8568,0,-103.892	0/1:128:94,34:94:3332:34:1212:-70.8545,0,-261.566	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/0:44:44,0:44:1555:0:0:0,-13.2453,-140.241	0/1:184:28,156:28:1000:156:5572:-446.205,0,-34.9259	0/1:272:62,210:62:2220:210:7450:-588.536,0,-118.184	0/1:105:59,46:59:2091:46:1647:-116.91,0,-156.851	0/0:86:86,0:86:3016:0:0:0,-25.8886,-271.673	0/0:126:126,0:126:4378:0:0:0,-37.9298,-394.199
chr10	3407947	.	G	C	40917.6	PASS	AB=0.520598;ABP=20.0073;AC=46;AF=0.247312;AN=186;AO=2419;CIGAR=1X;DP=8856;DPB=8856;DPRA=1.35959;EPP=5255.8;EPPR=13946;GTI=1;LEN=1;MEANALT=1.12727;MQM=59.7387;MQMR=59.9849;NS=93;NUMALT=1;ODDS=1.59688;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86296;QR=229080;RO=6425;RPL=0;RPP=5255.8;RPPR=13954.7;RPR=2419;RUN=1;SAF=2419;SAP=5255.8;SAR=0;SRF=6424;SRP=13946;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:25,5:25:900:5:180:-7.16134,0,-71.9303	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.792	0/0:165:165,0:165:5865:0:0:0,-49.6699,-527.954	0/1:175:85,90:85:2986:90:3201:-235.623,0,-216.289	0/1:78:46,32:46:1637:32:1139:-79.338,0,-124.136	0/1:27:13,14:13:468:14:504:-37.5457,0,-34.3318	0/1:123:71,51:71:2540:51:1824:-127.353,0,-191.766	0/1:159:82,77:82:2925:77:2747:-199.496,0,-215.62	0/1:108:72,35:72:2571:35:1256:-80.7753,0,-199.069	0/1:154:63,91:63:2241:91:3248:-246.103,0,-155.593	0/1:37:16,21:16:568:21:752:-56.8658,0,-40.3138	0/1:59:26,33:26:932:33:1180:-88.7228,0,-66.4381	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:71:71,0:71:2529:0:0:0,-21.3731,-227.86	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/1:218:95,123:95:3389:123:4406:-331.029,0,-239.6	0/1:191:105,85:105:3729:85:3004:-212.937,0,-278.296	0/1:172:48,124:48:1701:124:4415:-345.724,0,-101.597	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.5	0/0:139:132,7:132:4680:7:252:0,-18.8142,-398.329	0/1:68:30,38:30:1076:38:1364:-102.581,0,-76.6828	0/0:407:402,2:402:14319:2:57:0,-116.498,-1283.04	0/0:267:267,0:267:9539:0:0:0,-80.375,-858.464	0/1:42:22,20:22:777:20:720:-52.4809,0,-57.6071	0/1:348:146,202:146:5176:202:7211:-544.054,0,-361.22	0/1:92:64,28:64:2277:28:1000:-62.616,0,-177.496	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.234	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:193:193,0:193:6909:0:0:0,-58.0988,-621.875	0/1:157:74,83:74:2648:83:2960:-219.346,0,-191.305	0/1:61:32,29:32:1129:29:1024:-74.1079,0,-83.5535	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:133:85,48:85:3060:48:1703:-113.514,0,-235.591	0/1:21:8,13:8:288:13:457:-35.136,0,-19.9458	0/1:60:43,17:43:1535:17:612:-37.3516,0,-120.381	0/1:70:28,42:28:1008:42:1497:-113.951,0,-69.9643	0/0:48:48,0:48:1686:0:0:0,-14.4494,-152.022	0/1:24:11,13:11:396:13:464:-34.8728,0,-28.758	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.286	0/1:191:76,115:76:2708:115:4097:-311.414,0,-186.465	0/0:140:140,0:140:4975:0:0:0,-42.1442,-447.895	0/0:164:164,0:164:5850:0:0:0,-49.3689,-526.383	0/1:176:78,98:78:2784:98:3500:-262.226,0,-197.819	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:153:60,93:60:2137:93:3332:-254.024,0,-146.539	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:140:139,0:139:4954:0:0:0,-41.8432,-445.648	0/1:60:39,21:39:1362:21:756:-50.3054,0,-104.813	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:47:25,22:25:892:22:784:-56.7337,0,-66.4513	0/1:66:25,41:25:892:41:1464:-112.179,0,-60.7317	0/1:75:39,36:39:1404:36:1275:-92.4651,0,-104.082	.:.:.:.:.:.:.:.	0/1:198:88,109:88:3160:109:3875:-289.196,0,-224.961	0/0:243:241,2:241:8587:2:72:0,-66.3136,-765.92	0/1:32:15,17:15:540:17:608:-45.4167,0,-39.299	0/0:68:67,1:67:2377:1:36:0,-16.8718,-210.588	0/1:167:75,91:75:2673:91:3251:-242.468,0,-190.483	0/0:46:45,1:45:1575:1:36:0,-10.2491,-138.436	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:102:101,1:101:3596:1:26:0,-28.1052,-321.246	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:29:28,1:28:996:1:36:0,-5.13159,-86.3566	0/0:54:54,0:54:1917:0:0:0,-16.2556,-172.805	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.221	0/0:135:134,1:134:4746:1:36:0,-37.0408,-423.544	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.472	0/0:115:115,0:115:4098:0:0:0,-34.6184,-369.003	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.565	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:91:89,2:89:3166:2:72:0,-20.557,-278.326	0/1:155:57,98:57:2048:98:3494:-267.972,0,-137.932	0/1:244:128,116:128:4565:116:4139:-299.238,0,-337.564	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:93:93,0:93:3308:0:0:0,-27.9958,-297.938	0/1:137:68,69:68:2436:69:2480:-182.207,0,-178.254	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.5	0/1:65:30,35:30:1076:35:1252:-93.41,0,-77.5859	0/1:62:34,28:34:1201:28:1000:-71.6433,0,-89.7298	0/1:32:16,16:16:572:16:576:-42.5405,0,-42.1805	0/1:45:22,23:22:759:23:828:-61.2932,0,-55.0786	0/1:54:17,37:17:600:37:1302:-101.217,0,-38.0736	0/0:75:75,0:75:2662:0:0:0,-22.5772,-239.823	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19
chr10	3407988	.	TTTTT	ATTTT,ATTTA	182871	PASS	AB=0.472446,0.525158;ABP=33.2856,28.2492;AC=140,46;AF=0.752688,0.247312;AN=186;AO=6322,2430;CIGAR=1X4M,1X3M1X;DP=8781;DPB=8788.8;DPRA=0,1.40617;EPP=13713.7,5279.69;EPPR=3.0103;GTI=1;LEN=1,5;MEANALT=1.82796,2.21429;MQM=59.9911,59.7025;MQMR=60;NS=93;NUMALT=2;ODDS=1.64115;PAIRED=0,0;PAIREDR=0;PAO=7.5,7.5;PQA=253,253;PQR=283;PRO=10;QA=222739,84825;QR=211;RO=6;RPL=6320,2430;RPP=13713.7,5279.69;RPPR=3.0103;RPR=2,0;RUN=1,1;SAF=6322,2430;SAP=13731.1,5279.69;SAR=0,0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,22,8:0:0:22,8:767,275:-85.0573,-22.6755,-16.0528,-62.7268,0,-60.3185	1/1:107:0,107,0:0:0:107,0:3730,0:-335.907,-32.2102,0,-335.907,-32.2102,-335.907	1/1:159:0,157,0:0:0:157,0:5521,0:-496.703,-47.2617,0,-496.703,-47.2617,-496.703	1/2:174:0,84,90:0:0:84,90:2967,3126:-495.782,-254.153,-228.866,-241.979,0,-214.886	1/2:76:0,45,31:0:0:45,31:1572,1058:-214.073,-86.1936,-72.6472,-128.224,0,-118.892	1/2:27:0,13,14:0:0:13,14:455,499:-78.0244,-41.0087,-37.0953,-37.3686,0,-33.1541	1/2:122:0,70,52:0:0:70,52:2457,1814:-347.848,-147.885,-126.812,-200.313,0,-184.659	1/2:158:0,82,76:0:0:82,76:2891,2637:-450.005,-214.61,-189.926,-235.744,0,-212.866	1/2:106:0,71,35:0:0:71,35:2508,1215:-303.37,-99.1177,-77.7446,-204.601,0,-194.065	1/2:155:0,64,90:0:0:64,90:2280,3134:-440.717,-254.873,-235.607,-185.935,0,-158.842	1/2:37:0,16,20:0:0:16,20:567,714:-104.394,-58.2049,-53.3884,-46.1848,0,-40.1642	1/2:59:0,26,33:0:0:26,33:924,1160:-169.63,-94.3334,-86.5066,-75.2333,0,-65.2993	1/1:61:0,61,0:0:0:61,0:2147,0:-193.495,-18.3628,0,-193.495,-18.3628,-193.495	1/1:55:0,54,0:0:0:54,0:1888,0:-169.836,-16.2556,0,-169.836,-16.2556,-169.836	1/1:53:0,53,0:0:0:53,0:1873,0:-168.428,-15.9546,0,-168.428,-15.9546,-168.428	1/1:47:0,46,0:0:0:46,0:1636,0:-147.169,-13.8474,0,-147.169,-13.8474,-147.169	1/1:70:0,70,0:0:0:70,0:2489,0:-224.262,-21.0721,0,-224.262,-21.0721,-224.262	1/1:72:0,72,0:0:0:72,0:2542,0:-229.031,-21.6742,0,-229.031,-21.6742,-229.031	1/2:16:0,8,8:0:0:8,8:284,287:-46.9066,-23.7682,-21.36,-23.4951,0,-21.0869	1/2:219:0,95,124:0:0:95,124:3366,4339:-627.499,-353.291,-324.693,-274.56,0,-237.232	1/2:192:0,105,87:0:0:105,87:3703,3033:-548.491,-246.975,-215.366,-301.867,0,-275.677	1/2:173:0,46,127:0:0:46,127:1615,4375:-487.126,-355.685,-341.837,-131.791,0,-93.5602	1/1:72:0,72,0:0:0:72,0:2504,0:-225.552,-21.6742,0,-225.552,-21.6742,-225.552	1/1:136:1,127,7:1:36:127,7:4446,249:-396.732,-35.292,0,-376.74,-17.9143,-377.57	1/2:67:0,28,39:0:0:28,39:984,1370:-191.874,-111.781,-103.352,-80.4446,0,-68.7044	1/1:406:1,403,1:1:31:403,1:14173,36:-1272.26,-118.828,0,-1269.63,-118.354,-1271.81	1/1:264:0,264,0:0:0:264,0:9268,0:-833.711,-79.4719,0,-833.711,-79.4719,-833.711	1/2:39:0,20,19:0:0:20,19:704,655:-110.862,-53.5463,-47.5257,-57.6639,0,-51.9444	1/2:346:0,141,205:0:0:141,205:4948,7143:-983.398,-580.715,-538.269,-402.617,0,-340.906	1/2:94:0,66,28:0:0:66,28:2326,972:-268.742,-79.359,-59.491,-189.731,0,-181.302	1/1:136:1,135,0:1:36:135,0:4783,0:-427.004,-37.7317,0,-427.305,-40.6391,-430.242	1/1:14:0,14,0:0:0:14,0:483,0:-43.7973,-4.21442,0,-43.7973,-4.21442,-43.7973	1/2:11:0,4,7:0:0:4,7:144,247:-32.2179,-20.4657,-19.2616,-12.1095,0,-10.0023	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:9:0,9,0:0:0:9,0:312,0:-28.4154,-2.70927,0,-28.4154,-2.70927,-28.4154	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/1:193:0,189,0:0:0:189,0:6652,0:-598.521,-56.8947,0,-598.521,-56.8947,-598.521	1/2:155:0,72,83:0:0:72,83:2552,2914:-445.338,-237.433,-215.759,-208.198,0,-183.213	1/2:61:0,33,28:0:0:33,28:1149,976:-173.064,-79.6573,-69.7233,-93.6982,0,-85.2694	1/1:1:0,1,0:0:0:1,0:32,0:-3.19931,-0.30103,0,-3.19931,-0.30103,-3.19931	1/2:135:3,83,48:3:108:83,48:2894,1680:-362.328,-127.869,-111.696,-226.547,0,-220.91	1/2:22:0,9,13:0:0:9,13:320,461:-63.9834,-37.9053,-35.196,-26.4331,0,-22.5197	1/2:57:0,41,16:0:0:41,16:1449,558:-163.744,-45.7309,-33.3887,-118.363,0,-113.546	1/2:71:0,29,42:0:0:29,42:1019,1471:-202.979,-120.039,-111.309,-83.2914,0,-70.6482	1/1:49:0,49,0:0:0:49,0:1723,0:-155.354,-14.7505,0,-155.354,-14.7505,-155.354	1/2:25:0,11,14:0:0:11,14:380,476:-69.8276,-38.9498,-35.6385,-31.2206,0,-27.0062	1/1:95:0,94,1:0:0:94,1:3317,25:-298.499,-28.2968,0,-296.552,-26.0983,-296.251	1/2:187:0,74,113:0:0:74,113:2615,3964:-535.909,-322.94,-300.664,-213.321,0,-179.305	1/1:142:0,141,1:0:0:141,1:4947,29:-445.091,-42.4452,0,-442.782,-39.8466,-442.481	1/1:159:0,159,0:0:0:159,0:5654,0:-508.983,-47.8638,0,-508.983,-47.8638,-508.983	1/2:172:0,74,97:0:0:74,97:2620,3422:-492.166,-278.746,-256.469,-213.522,0,-184.322	1/2:9:0,4,5:0:0:4,5:140,179:-26.3423,-14.9552,-13.7511,-11.7405,0,-10.2353	1/2:154:0,59,95:0:0:59,95:2090,3292:-437.731,-267.473,-249.712,-170.191,0,-141.593	1/1:23:0,23,0:0:0:23,0:820,0:-74.1225,-6.92369,0,-74.1225,-6.92369,-74.1225	1/1:14:0,14,0:0:0:14,0:496,0:-44.9743,-4.21442,0,-44.9743,-4.21442,-44.9743	1/1:143:0,143,0:0:0:143,0:5029,0:-452.703,-43.0473,0,-452.703,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chr10	3408001	.	C	T	31571.9	PASS	AB=0.499868;ABP=3.01088;AC=49;AF=0.263441;AN=186;AO=1894;CIGAR=1X;DP=7156;DPB=7156;DPRA=1.05182;EPP=4115.78;EPPR=11394.6;GTI=1;LEN=1;MEANALT=1.02;MQM=59.887;MQMR=59.8756;NS=93;NUMALT=1;ODDS=3.21159;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67431;QR=187293;RO=5258;RPL=0;RPP=4115.78;RPPR=11394.6;RPR=1894;RUN=1;SAF=0;SAP=4115.78;SAR=1894;SRF=6;SRP=11368.6;SRR=5252;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:21,21:21:741:21:743:-54.5501,0,-54.3665	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.397	0/0:207:207,0:207:7420:0:0:0,-62.3132,-667.809	0/1:123:58,65:58:2051:65:2304:-169.965,0,-147.835	0/1:34:16,18:16:572:18:636:-47.333,0,-41.5784	0/1:31:15,16:15:516:16:576:-42.8431,0,-37.4219	0/1:58:29,29:29:1036:29:1044:-76.8151,0,-76.0942	0/1:103:40,63:40:1428:63:2256:-172.297,0,-97.8105	0/1:38:20,18:20:708:18:644:-46.8515,0,-52.6055	0/1:67:32,35:32:1140:35:1256:-93.1763,0,-82.7402	0/1:78:45,33:45:1597:33:1176:-82.6674,0,-120.538	0/1:100:53,47:53:1892:47:1662:-119.762,0,-140.454	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.238	0/0:88:88,0:88:3135:0:0:0,-26.4906,-282.376	0/0:61:61,0:61:2144:0:0:0,-18.3628,-193.117	0/0:69:69,0:69:2462:0:0:0,-20.7711,-221.833	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.42	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7915	0/1:37:24,13:24:852:13:464:-30.9594,0,-65.8605	0/1:155:77,78:77:2756:78:2791:-204.768,0,-201.621	0/1:77:46,31:46:1648:31:1108:-76.8471,0,-125.384	0/1:72:28,44:28:993:44:1584:-121.177,0,-67.9907	0/0:53:53,0:53:1856:0:0:0,-15.9546,-167.271	0/1:34:27,7:27:968:7:248:-12.4292,0,-77.2023	0/1:103:55,48:55:1959:48:1716:-123.72,0,-145.579	0/0:146:146,0:146:5176:0:0:0,-43.9504,-465.983	0/0:247:247,0:247:8758:0:0:0,-74.3544,-788.211	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	0/1:210:90,120:90:3224:120:4283:-322.408,0,-227.166	0/1:100:47,53:47:1666:53:1845:-136.223,0,-120.078	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.132	.:.:.:.:.:.:.:.	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7335	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:160:160,0:160:5688:0:0:0,-48.1648,-512.041	0/1:101:55,46:55:1951:46:1623:-115.95,0,-145.451	0/1:65:40,25:40:1428:25:892:-61.0327,0,-109.246	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:107:59,48:59:2103:48:1722:-122.926,0,-157.329	0/1:32:22,10:22:783:10:360:-23.1113,0,-61.16	0/1:123:67,56:67:2408:56:1966:-140.184,0,-179.943	0/1:41:28,13:28:991:13:455:-28.9397,0,-77.1613	0/0:70:70,0:70:2487:0:0:0,-21.0721,-224.083	0/1:128:74,54:74:2639:54:1924:-134.882,0,-199.207	0/0:110:110,0:110:3927:0:0:0,-33.1133,-353.547	0/1:123:58,65:58:2072:65:2318:-171.848,0,-149.721	0/0:69:69,0:69:2436:0:0:0,-20.7711,-219.494	0/0:133:133,0:133:4756:0:0:0,-40.037,-428.198	0/1:137:59,78:59:2120:78:2760:-207.4,0,-149.826	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:164:90,74:90:3211:74:2613:-186.038,0,-239.817	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:99:99,0:99:3514:0:0:0,-29.802,-316.363	0/1:21:14,7:14:491:7:252:-16.7073,0,-38.1995	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:89:42,47:42:1504:47:1657:-122.306,0,-108.861	0/1:115:50,65:50:1788:65:2327:-175.071,0,-126.583	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:99:47,52:47:1688:52:1864:-138.221,0,-122.405	0/0:157:157,0:157:5563:0:0:0,-47.2617,-500.798	0/1:66:41,25:41:1450:25:896:-61.0924,0,-110.88	0/0:79:78,1:78:2767:1:36:0,-20.1831,-245.674	0/1:95:44,51:44:1576:51:1797:-133.412,0,-113.534	0/0:100:100,0:100:3587:0:0:0,-30.103,-323.036	0/0:81:81,0:81:2885:0:0:0,-24.3834,-259.884	0/0:54:54,0:54:1906:0:0:0,-16.2556,-171.814	0/0:48:48,0:48:1695:0:0:0,-14.4494,-152.565	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3719	0/0:140:140,0:140:4975:0:0:0,-42.1442,-447.876	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.557	0/0:87:86,0:86:3063:0:0:0,-25.8886,-275.49	0/0:123:123,0:123:4395:0:0:0,-37.0267,-395.532	0/0:115:115,0:115:4099:0:0:0,-34.6184,-369.091	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.111	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:78:77,1:77:2756:1:36:0,-19.8821,-244.057	0/1:66:20,46:20:716:46:1646:-128.547,0,-44.8988	0/1:162:75,87:75:2665:87:3100:-230.461,0,-191.124	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.766	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.317	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/1:124:66,58:66:2368:58:2071:-149.332,0,-176.05	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3288	0/1:59:27,32:27:947:32:1144:-85.5087,0,-67.782	0/1:75:37,35:37:1323:35:1244:-90.2311,0,-97.3376	0/1:81:44,37:44:1580:37:1324:-95.0741,0,-118.107	0/1:127:53,74:53:1891:74:2628:-197.76,0,-132.237	0/1:62:26,36:26:932:36:1296:-98.2801,0,-65.535	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.977	0/0:92:92,0:92:3275:0:0:0,-27.6948,-294.971
chr10	3414722	.	A	G	168314	PASS	AB=0.553896;ABP=134.791;AC=141;AF=0.75;AN=188;AO=7914;CIGAR=1X;DP=10256;DPB=10256;DPRA=55.129;EPP=16773.6;EPPR=4963.38;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9877;MQMR=60;NS=94;NUMALT=1;ODDS=0.708479;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281902;QR=83763;RO=2340;RPL=7866;RPP=16773.6;RPPR=4963.38;RPR=48;RUN=1;SAF=0;SAP=17188;SAR=7914;SRF=0;SRP=5084.26;SRR=2340;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:60:27,33:27:968:33:1171:-87.6349,0,-69.3756	1/1:84:0,84:0:0:84:2995:-269.782,-25.2865,0	1/1:212:0,212:0:0:212:7527:-677.476,-63.8184,0	0/1:313:121,192:121:4326:192:6812:-518.932,0,-295.293	0/1:16:2,14:2:72:14:500:-40.5197,0,-2.02024	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:73:33,40:33:1188:40:1432:-107.202,0,-85.2534	0/1:126:60,66:60:2156:66:2359:-174.638,0,-156.377	0/1:94:44,50:44:1572:50:1773:-131.555,0,-113.475	0/1:88:45,42:45:1616:42:1490:-107.844,0,-119.181	0/1:56:26,30:26:932:30:1080:-80.6556,0,-67.3412	0/1:135:67,68:67:2382:68:2417:-177.146,0,-173.998	1/1:96:0,96:0:0:96:3383:-304.686,-28.8989,0	1/1:63:0,63:0:0:63:2240:-201.863,-18.9649,0	1/1:96:0,96:0:0:96:3439:-309.722,-28.8989,0	1/1:80:0,80:0:0:80:2827:-254.669,-24.0824,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:421:163,258:163:5835:258:9183:-699.709,0,-398.528	0/1:178:62,116:62:2232:116:4138:-319.02,0,-147.56	0/1:90:55,35:55:1971:35:1247:-85.4414,0,-150.571	1/1:165:1,164:1:36:164:5857:-523.643,-46.0717,0	1/1:101:6,95:6:216:95:3388:-285.346,-10.6135,0	0/1:63:35,28:35:1256:28:1008:-72.0715,0,-94.3804	1/1:298:0,298:0:0:298:10593:-953.289,-89.7069,0	1/1:357:0,357:0:0:357:12719:-1144.54,-107.468,0	0/1:39:12,27:12:432:27:968:-75.6972,0,-27.481	0/1:396:162,234:162:5807:234:8310:-628.706,0,-403.534	0/1:135:56,79:56:2008:79:2827:-214.029,0,-140.354	1/1:103:0,103:0:0:103:3683:-331.673,-31.0061,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:19:11,8:11:379:8:284:-20.1838,0,-28.721	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:214:0,214:0:0:214:7619:-685.732,-64.4204,0	0/1:150:72,78:72:2580:78:2775:-204.837,0,-187.295	0/1:54:24,30:24:856:30:1071:-80.446,0,-61.1055	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:127:76,51:76:2724:51:1818:-125.67,0,-207.172	0/1:40:21,19:21:756:19:675:-49.0358,0,-56.326	0/1:138:50,88:50:1788:88:3151:-242.273,0,-119.66	0/1:82:42,40:42:1508:40:1440:-105.213,0,-111.33	1/1:66:0,66:0:0:66:2354:-212.119,-19.868,0	0/1:104:59,45:59:2116:45:1576:-110.821,0,-159.402	1/1:153:0,153:0:0:153:5452:-490.81,-46.0576,0	0/1:137:59,78:59:2109:78:2769:-208.211,0,-148.836	1/1:140:0,140:0:0:140:4980:-448.338,-42.1442,0	1/1:195:0,195:0:0:195:6955:-626.016,-58.7009,0	0/1:75:51,24:51:1828:24:843:-53.6107,0,-142.224	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:212:82,130:82:2944:130:4647:-354.573,0,-201.375	1/1:54:0,54:0:0:54:1922:-173.256,-16.2556,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:175:0,175:0:0:175:6241:-561.786,-52.6803,0	0/1:60:27,33:27:960:33:1188:-89.1668,0,-68.6545	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:101:42,59:42:1500:59:2061:-155.356,0,-104.891	0/1:108:55,53:55:1968:53:1908:-139.486,0,-144.884	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:249:102,147:102:3659:147:5222:-395.163,0,-254.556	1/1:237:0,237:0:0:237:8455:-760.954,-71.3441,0	0/1:58:15,43:15:531:43:1517:-119.361,0,-30.6622	1/1:120:0,120:0:0:120:4270:-384.391,-36.1236,0	0/1:188:90,98:90:3228:98:3501:-258.708,0,-234.148	1/1:205:0,205:0:0:205:7337:-660.378,-61.7112,0	1/1:52:0,52:0:0:52:1846:-166.419,-15.6536,0	1/1:93:0,93:0:0:93:3290:-296.321,-27.9958,0	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	1/1:18:0,18:0:0:18:636:-57.568,-5.41854,0	1/1:150:0,150:0:0:150:5361:-482.622,-45.1545,0	1/1:131:0,131:0:0:131:4656:-419.204,-39.4349,0	1/1:111:0,111:0:0:111:3972:-357.671,-33.4143,0	1/1:235:0,234:0:0:234:8356:-751.658,-70.441,0	1/1:62:0,62:0:0:62:2211:-199.254,-18.6639,0	1/1:139:2,137:2:72:137:4894:-433.775,-35.0064,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:146:0,146:0:0:146:5214:-469.399,-43.9504,0	0/1:160:47,113:47:1666:113:4011:-312.946,0,-102.061	0/1:253:112,141:112:3996:141:5043:-377.855,0,-283.671	1/1:58:0,58:0:0:58:2063:-185.94,-17.4597,0	1/1:91:0,91:0:0:91:3231:-291.012,-27.3937,0	1/1:49:0,49:0:0:49:1748:-157.604,-14.7505,0	0/1:163:76,87:76:2724:87:3103:-230.43,0,-196.335	1/1:28:0,28:0:0:28:989:-89.322,-8.42884,0	0/1:102:60,42:60:2148:42:1490:-103.688,0,-162.882	0/1:85:46,39:46:1619:39:1377:-98.6391,0,-120.408	0/1:41:18,23:18:648:23:820:-61.7803,0,-46.3097	0/1:83:40,43:40:1436:43:1536:-113.548,0,-104.552	0/1:108:64,44:64:2295:44:1555:-107.73,0,-174.299	1/1:176:0,176:0:0:176:6276:-564.935,-52.9813,0	1/1:115:0,115:0:0:115:4112:-370.265,-34.6185,0
chr10	3433348	.	T	A	23708.2	PASS	AB=0.467356;ABP=31.6479;AC=46;AF=0.244681;AN=188;AO=1449;CIGAR=1X;DP=6361;DPB=6361;DPRA=0.958797;EPP=3149.47;EPPR=10634.6;GTI=1;LEN=1;MEANALT=1;MQM=59.5638;MQMR=59.9297;NS=94;NUMALT=1;ODDS=1.07255;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51946;QR=174087;RO=4908;RPL=1449;RPP=3149.47;RPPR=10634.6;RPR=0;RUN=1;SAF=0;SAP=3149.47;SAR=1449;SRF=0;SRP=10660.6;SRR=4908;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:110:110,0:110:3895:0:0:0,-33.1133,-350.742	0/1:151:75,76:75:2641:76:2707:-198.4,0,-192.393	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:37:28,9:28:1004:9:320:-17.9656,0,-79.5378	0/1:23:16,7:16:561:7:252:-16.1053,0,-43.8934	0/1:89:53,36:53:1869:36:1292:-89.7758,0,-141.684	0/1:36:23,13:23:816:13:459:-30.6006,0,-62.9245	0/1:41:27,14:27:952:14:489:-31.9967,0,-73.2819	0/1:83:50,33:50:1784:33:1188:-82.2404,0,-135.857	0/1:109:49,60:49:1748:60:2140:-159.659,0,-124.791	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.094	0/0:129:129,0:129:4584:0:0:0,-38.8329,-412.729	0/0:83:83,0:83:2937:0:0:0,-24.9855,-264.565	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/0:57:57,0:57:2009:0:0:0,-17.1587,-181.026	0/0:45:44,1:44:1572:1:36:0,-9.94807,-138.148	0/1:32:13,19:13:460:19:684:-52.2574,0,-32.102	0/1:39:31,8:31:1080:8:288:-14.5133,0,-85.7656	0/1:98:56,42:56:1992:42:1508:-106.156,0,-150.045	0/1:42:15,27:15:498:27:972:-75.1537,0,-32.4911	0/0:131:131,0:131:4634:0:0:0,-39.4349,-417.225	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:28:12,16:12:417:16:572:-43.38,0,-29.4314	0/0:149:149,0:149:5262:0:0:0,-44.8535,-473.721	0/0:95:95,0:95:3384:0:0:0,-28.5978,-304.772	0/1:47:30,17:30:1068:17:612:-41.265,0,-82.2837	0/1:152:81,71:81:2876:71:2556:-184.53,0,-213.321	0/1:150:98,52:98:3485:52:1864:-122.038,0,-268.707	0/0:79:79,0:79:2812:0:0:0,-23.7814,-253.318	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:228:227,0:227:8034:0:0:0,-68.3338,-722.643	0/1:86:51,35:51:1809:35:1260:-87.8031,0,-137.201	0/1:56:29,27:29:1032:27:964:-70.2159,0,-76.3276	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:98:56,42:56:1973:42:1504:-106.138,0,-148.342	0/1:28:14,14:14:504:14:500:-36.9055,0,-37.2693	0/1:63:27,36:27:945:36:1292:-97.6143,0,-66.3973	0/1:81:41,40:41:1464:40:1431:-104.701,0,-107.67	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/1:36:19,17:19:668:17:608:-44.214,0,-49.6086	0/0:41:40,1:40:1428:1:36:0,-8.74395,-125.207	0/1:87:45,42:45:1608:42:1512:-109.553,0,-118.82	0/0:34:33,0:33:1180:0:0:0,-9.93399,-106.148	0/0:120:120,0:120:4260:0:0:0,-36.1236,-383.583	0/1:43:27,16:27:956:16:576:-39.2307,0,-73.4114	0/1:11:6,5:6:208:5:180:-13.2407,0,-15.7478	0/1:45:18,27:18:648:27:957:-72.8865,0,-45.1055	0/0:59:59,0:59:2076:0:0:0,-17.7608,-187.11	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:9:7,2:7:233:2:72:-4.12745,0,-18.585	0/1:53:30,23:30:1068:23:824:-58.5241,0,-80.4775	0/1:117:58,59:58:2072:59:2120:-155.836,0,-151.53	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:114:62,52:62:2204:52:1872:-134.437,0,-164.306	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.097	0/1:50:25,25:25:896:25:900:-66.2603,0,-65.9089	0/0:69:68,1:68:2408:1:36:0,-17.1728,-213.379	0/1:134:95,39:95:3372:39:1400:-85.9318,0,-263.36	0/0:144:144,0:144:5101:0:0:0,-43.3483,-457.876	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/0:40:40,0:40:1405:0:0:0,-12.0412,-126.634	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:58:58,0:58:2002:0:0:0,-17.4597,-180.451	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:102:102,0:102:3597:0:0:0,-30.7051,-323.94	0/0:139:139,0:139:4905:0:0:0,-41.8432,-441.608	0/0:36:34,0:34:1192:0:0:0,-10.235,-107.226	0/0:57:57,0:57:2009:0:0:0,-17.1587,-181.082	0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1752	0/0:81:81,0:81:2860:0:0:0,-24.3834,-257.637	0/1:69:43,26:43:1520:26:932:-63.4163,0,-116.314	0/1:58:29,29:29:1036:29:1044:-76.8104,0,-76.0942	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/0:108:108,0:108:3828:0:0:0,-32.5112,-344.721	0/0:46:46,0:46:1628:0:0:0,-13.8474,-146.809	0/1:146:62,84:62:2204:84:3012:-227.349,0,-154.675	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7897	0/1:71:40,31:40:1436:31:1107:-78.567,0,-108.165	0/1:96:46,50:46:1652:50:1792:-132.655,0,-120.035	0/1:97:32,65:32:1132:65:2336:-181.286,0,-72.9887	0/1:151:75,76:75:2672:76:2724:-199.937,0,-195.271	0/1:97:31,66:31:1112:66:2368:-184.161,0,-71.1914	0/0:155:155,0:155:5502:0:0:0,-46.6596,-495.306	0/0:131:131,0:131:4652:0:0:0,-39.4349,-418.847
chr10	3435129	.	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chr10	3435669	.	A	G	101027	PASS	AB=0.45038;ABP=81.8828;AC=138;AF=0.741935;AN=186;AO=4992;CIGAR=1X;DP=7085;DPB=7085;DPRA=38.4946;EPP=10843;EPPR=4539.22;GTI=3;LEN=1;MEANALT=1.04348;MQM=59.9876;MQMR=59.9952;NS=93;NUMALT=1;ODDS=0.0228254;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175612;QR=74146;RO=2089;RPL=1;RPP=10834.3;RPPR=4539.22;RPR=4991;RUN=1;SAF=1;SAP=10834.3;SAR=4991;SRF=0;SRP=4539.22;SRR=2089;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	1/1:59:0,59:0:0:59:2068:-186.389,-17.7608,0	1/1:82:0,82:0:0:82:2902:-261.414,-24.6845,0	0/1:306:161,145:161:5685:145:5150:-371.53,0,-419.642	0/1:7:3,4:3:108:4:135:-10.3753,0,-7.96796	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:56:35,21:35:1248:21:717:-47.9854,0,-95.7672	0/1:86:41,45:41:1447:45:1575:-116.148,0,-104.637	0/1:77:45,31:45:1604:31:1089:-75.2246,0,-121.559	0/1:115:69,46:69:2459:46:1631:-112.459,0,-186.946	0/1:42:24,18:24:860:18:644:-45.6473,0,-65.0786	0/1:70:34,36:34:1212:36:1224:-89.3832,0,-88.3142	1/1:66:0,66:0:0:66:2327:-209.691,-19.868,0	1/1:71:0,71:0:0:71:2494:-224.711,-21.3731,0	1/1:56:0,56:0:0:56:1979:-178.381,-16.8577,0	1/1:49:0,49:0:0:49:1719:-154.992,-14.7505,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:20:0,20:0:0:20:684:-61.8765,-6.0206,0	0/1:25:15,10:15:540:10:352:-24.4924,0,-41.4108	0/1:102:41,61:41:1445:61:2165:-164.41,0,-99.6386	0/1:212:122,90:122:4338:90:3093:-214.779,0,-326.779	0/1:39:30,9:30:1064:9:320:-17.4022,0,-84.3315	1/1:74:0,74:0:0:74:2622:-236.228,-22.2762,0	1/1:48:2,46:2:72:46:1626:-139.791,-7.61272,0	0/1:48:25,23:25:868:23:816:-59.3123,0,-63.9835	1/1:226:1,225:1:36:225:7909:-708.241,-64.4345,0	1/1:164:0,164:0:0:164:5746:-517.264,-49.3689,0	0/1:45:21,24:21:748:24:856:-63.8148,0,-54.0989	0/1:235:157,78:157:5552:78:2736:-175.739,0,-429.065	0/1:123:59,64:59:2096:64:2257:-166.363,0,-151.881	1/1:70:0,70:0:0:70:2477:-223.183,-21.0721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:55:53,2:53:1875:2:63:0,-10.5735,-163.045	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:164:0,164:0:0:164:5790:-521.219,-49.3689,0	0/1:87:56,31:56:1995:31:1096:-72.7603,0,-153.634	0/1:40:20,20:20:716:20:704:-51.6433,0,-52.7265	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:98:59,39:59:2112:39:1381:-95.0858,0,-160.848	0/1:32:13,19:13:455:19:658:-49.9083,0,-31.649	0/1:25:15,10:15:514:10:351:-24.4009,0,-39.0581	0/1:43:26,17:26:932:17:599:-41.2938,0,-71.2546	1/1:37:0,37:0:0:37:1264:-114.054,-11.1381,0	0/1:87:39,48:39:1400:48:1686:-125.835,0,-100.11	1/1:41:0,41:0:0:41:1417:-127.823,-12.3422,0	0/1:111:63,48:63:2238:48:1679:-117.979,0,-168.268	1/1:98:0,98:0:0:98:3466:-311.525,-29.5009,0	1/1:145:0,145:0:0:145:5058:-455.354,-43.6494,0	0/1:86:56,30:56:1967:30:1052:-69.0991,0,-151.414	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:106:62,44:62:2204:44:1564:-109.142,0,-166.716	1/1:38:0,38:0:0:38:1332:-120.178,-11.4391,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:157:0,157:0:0:157:5535:-498.282,-47.2617,0	0/1:28:14,14:14:495:14:488:-35.8216,0,-36.4542	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:7:5,2:5:167:2:72:-4.72951,0,-13.2512	0/1:80:50,30:50:1780:30:1072:-72.7101,0,-136.4	0/1:77:36,41:36:1288:41:1442:-106.896,0,-93.0443	.:.:.:.:.:.:.:.	0/1:281:140,141:140:4981:141:4902:-356.747,0,-363.85	1/1:122:0,121:0:0:121:4289:-385.87,-36.4246,0	0/1:79:48,31:48:1716:31:1088:-74.4451,0,-130.944	1/1:37:0,37:0:0:37:1304:-117.661,-11.1381,0	0/1:146:92,54:92:3265:54:1902:-127.506,0,-250.12	1/1:180:0,179:0:0:179:6307:-567.37,-53.8844,0	1/1:34:1,33:1:36:33:1176:-102.549,-6.63675,0	1/1:41:0,41:0:0:41:1425:-128.541,-12.3422,0	1/1:34:0,34:0:0:34:1197:-108.033,-10.235,0	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	1/1:85:1,84:1:36:84:2926:-259.976,-21.9893,0	1/1:87:0,87:0:0:87:3045:-274.28,-26.1896,0	1/1:122:0,122:0:0:122:4317:-388.707,-36.7257,0	1/1:239:1,238:1:36:238:8423:-754.479,-68.3479,0	1/1:24:0,24:0:0:24:830:-75.0149,-7.22472,0	1/1:55:2,53:2:72:53:1891:-163.631,-9.71993,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:100:0,100:0:0:100:3507:-315.844,-30.103,0	0/1:62:26,36:26:932:36:1284:-97.1996,0,-65.535	0/1:163:90,73:90:3172:73:2578:-183.202,0,-236.635	1/1:61:0,61:0:0:61:2148:-193.587,-18.3628,0	1/1:62:1,61:1:36:61:2141:-189.356,-15.0656,0	1/1:47:0,47:0:0:47:1590:-143.382,-14.1484,0	0/1:110:49,61:49:1751:61:2166:-162.092,0,-124.76	1/1:20:0,20:0:0:20:699:-63.2325,-6.0206,0	0/1:51:27,24:27:963:24:856:-62.0086,0,-71.6334	0/1:64:35,29:35:1200:29:1028:-73.5671,0,-89.031	0/1:58:24,34:24:851:34:1207:-91.4755,0,-59.4497	0/1:122:62,59:62:2211:59:2081:-150.922,0,-162.617	0/1:34:25,9:25:900:9:320:-18.9073,0,-71.086	1/1:119:0,119:0:0:119:4181:-376.476,-35.8226,0	1/1:113:0,113:0:0:113:3991:-359.382,-34.0164,0
chr10	3497689	.	C	T,G	194299	PASS	AB=0.479538,0.520095;ABP=22.8277,22.1232;AC=138,50;AF=0.734043,0.265957;AN=188;AO=6367,2843;CIGAR=1X,1X;DP=9215;DPB=9215;DPRA=49.5323,1.38725;EPP=13828.8,6176.51;EPPR=9.52472;GTI=5;LEN=1,1;MEANALT=1.58065,2;MQM=51.1253,57.0981;MQMR=60;NS=94;NUMALT=2;ODDS=0.411161;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=227970,101339;QR=108;RO=3;RPL=6367,2843;RPP=13828.8,6176.51;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13828.8,6176.51;SAR=6367,2843;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,26,15:0:0:26,15:936,532:-118.723,-43.5033,-35.6765,-75.5737,0,-71.0582	1/1:78:0,78,0:0:0:78,0:2800,0:-248.052,-23.4803,0,-248.052,-23.4803,-248.052	1/1:133:0,133,0:0:0:133,0:4761,0:-424.668,-40.037,0,-424.668,-40.037,-424.668	1/2:247:0,137,110:0:0:137,110:4908,3920:-718.038,-319.625,-278.384,-398.769,0,-365.656	1/2:69:0,29,40:0:0:29,40:1040,1428:-200.294,-116.085,-107.355,-84.5644,0,-72.5232	1/2:28:0,14,14:0:0:14,14:504,504:-81.97,-41.404,-37.1896,-40.9234,0,-36.7089	1/2:38:0,19,19:0:0:19,19:684,675:-110.931,-55.233,-49.5134,-56.0545,0,-50.3349	1/2:195:0,114,81:0:0:114,81:4096,2888:-565.642,-235.232,-200.915,-330.766,0,-306.382	1/2:155:0,58,97:0:0:58,97:2088,3468:-450.095,-282.119,-264.659,-168.332,0,-139.132	1/2:116:0,62,54:0:0:62,54:2212,1911:-334.692,-155.913,-137.249,-179.133,0,-162.877	1/2:28:0,14,14:0:0:14,14:500,492:-80.9294,-40.3911,-36.1767,-40.8915,0,-36.6771	1/2:89:0,43,46:0:0:43,46:1544,1630:-255.89,-132.454,-119.51,-123.788,0,-109.94	1/1:76:0,76,0:0:0:76,0:2728,0:-241.785,-22.8783,0,-241.785,-22.8783,-241.785	1/1:46:0,46,0:0:0:46,0:1644,0:-147.698,-13.8474,0,-147.698,-13.8474,-147.698	1/1:55:0,55,0:0:0:55,0:1976,0:-177.698,-16.5567,0,-177.698,-16.5567,-177.698	1/1:57:0,57,0:0:0:57,0:2016,0:-179.694,-17.1587,0,-179.694,-17.1587,-179.694	1/1:40:0,40,0:0:0:40,0:1432,0:-127.512,-12.0412,0,-127.512,-12.0412,-127.512	1/1:34:0,34,0:0:0:34,0:1224,0:-109.841,-10.235,0,-109.841,-10.235,-109.841	1/2:30:0,12,18:0:0:12,18:424,648:-87.3489,-53.1625,-49.5501,-34.5401,0,-29.1216	1/2:156:0,75,81:0:0:75,81:2692,2896:-453.896,-234.905,-212.328,-219.347,0,-194.964	1/2:274:0,125,149:0:0:125,149:4471,5300:-793.166,-431.435,-393.806,-362.086,0,-317.232	1/2:159:0,50,109:0:0:50,109:1781,3899:-462.892,-318.2,-303.149,-145.047,0,-112.235	1/1:205:0,205,0:0:0:205,0:7310,0:-654.394,-61.7112,0,-654.394,-61.7112,-654.394	1/2:21:0,19,2:0:0:19,2:679,72:-60.9973,-6.23141,-0.511843,-55.125,0,-54.523	1/2:75:0,22,53:0:0:22,53:775,1864:-214.297,-151.806,-145.184,-62.8401,0,-46.8855	1/1:312:0,312,0:0:0:312,0:11148,0:-1000.08,-93.9214,0,-1000.08,-93.9214,-1000.08	1/2:207:0,94,113:0:0:94,113:3365,4041:-601.23,-329.206,-300.909,-272.38,0,-238.363	1/2:39:0,15,24:0:0:15,24:540,842:-112.726,-68.8151,-64.2996,-44.2668,0,-37.0421	1/2:425:1,198,226:1:36:198,226:7108,8049:-1229.65,-652.922,-596.256,-574.085,0,-508.99	1/2:76:0,42,34:0:0:42,34:1508,1219:-221.439,-99.4843,-86.8411,-122.312,0,-112.077	1/1:75:0,75,0:0:0:75,0:2700,0:-242.568,-22.5773,0,-242.568,-22.5773,-242.568	1/1:5:0,5,0:0:0:5,0:165,0:-15.1299,-1.50515,0,-15.1299,-1.50515,-15.1299	1/2:9:0,2,7:0:0:2,7:72,248:-26.3726,-20.5179,-19.9158,-6.21226,0,-4.10505	1/1:8:0,8,0:0:0:8,0:280,0:-25.4181,-2.40824,0,-25.4181,-2.40824,-25.4181	1/1:4:0,4,0:0:0:4,0:144,0:-13.2414,-1.20412,0,-13.2414,-1.20412,-13.2414	1/1:1:0,1,0:0:0:1,0:36,0:-3.57877,-0.30103,0,-3.57877,-0.30103,-3.57877	1/1:168:0,168,0:0:0:168,0:6019,0:-538.655,-50.573,0,-538.655,-50.573,-538.655	1/2:253:0,194,59:0:0:194,59:6859,2119:-727.167,-172.771,-114.371,-554.753,0,-536.992	1/2:29:0,13,15:0:0:13,15:468,532:-80.9048,-43.2671,-39.3537,-37.6333,0,-33.1179	2/2:2:0,0,2:0:0:0,2:0,72:-6.83347,-6.83347,-6.83347,-0.60206,-0.60206,0	1/2:66:0,44,22:0:0:44,22:1576,788:-192.505,-64.4505,-51.2052,-128.411,0,-121.789	1/2:23:0,12,11:0:0:12,11:432,392:-67.3943,-32.2712,-28.6589,-35.4803,0,-32.169	1/2:211:0,95,116:0:0:95,116:3370,4156:-609.203,-338.721,-310.123,-270.835,0,-235.916	1/2:77:0,37,40:0:0:37,40:1328,1414:-223.359,-115.412,-104.273,-108.303,0,-96.2619	1/1:39:0,39,0:0:0:39,0:1396,0:-124.734,-11.7402,0,-124.734,-11.7402,-124.734	1/2:112:0,37,75:0:0:37,75:1328,2672:-326.169,-218.068,-206.93,-108.458,0,-85.8804	1/1:131:0,131,0:0:0:131,0:4707,0:-419.38,-39.4349,0,-419.38,-39.4349,-419.38	1/2:218:0,119,99:0:0:119,99:4250,3530:-633.269,-287.878,-252.056,-345.747,0,-315.945	1/2:152:0,50,102:0:0:50,102:1796,3646:-443.487,-297.302,-282.251,-146.542,0,-115.837	1/1:176:0,176,0:0:0:176,0:6296,0:-563.62,-52.9813,0,-563.62,-52.9813,-563.62	1/2:96:0,41,55:0:0:41,55:1472,1967:-280.281,-160.448,-148.106,-120.19,0,-103.634	1/2:9:0,4,5:0:0:4,5:140,176:-25.8958,-14.6781,-13.4739,-11.5658,0,-10.0607	1/2:120:0,58,62:0:0:58,62:2080,2209:-348.266,-179.895,-162.435,-168.727,0,-150.063	1/1:26:0,26,0:0:0:26,0:936,0:-84.4744,-7.82678,0,-84.4744,-7.82678,-84.4744	1/1:1:0,1,0:0:0:1,0:36,0:-3.57877,-0.30103,0,-3.57877,-0.30103,-3.57877	1/1:163:0,163,0:0:0:163,0:5844,0:-522.698,-49.0679,0,-522.698,-49.0679,-522.698	1/2:56:0,14,42:0:0:14,42:50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chr10	3497701	.	CCA	ACG,CCG	191237	PASS	AB=0.47416,0.524732;ABP=34.4321,31.7965;AC=138,50;AF=0.734043,0.265957;AN=188;AO=6279,2852;CIGAR=1X1M1X,2M1X;DP=9143;DPB=9154.33;DPRA=49.1452,1.39601;EPP=13637.7,6161.35;EPPR=5.18177;GTI=6;LEN=3,1;MEANALT=1.66667,2.09434;MQM=51.0182,57.0757;MQMR=60;NS=94;NUMALT=2;ODDS=0.411346;PAIRED=0,0;PAIREDR=0;PAO=19,8.5;PQA=664,72;PQR=0;PRO=6.5;QA=222506,102134;QR=27;RO=1;RPL=6279,2848;RPP=13637.7,6161.35;RPPR=5.18177;RPR=0,4;RUN=1,1;SAF=0,0;SAP=13637.7,6196.05;SAR=6279,2852;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,25,14:0:0:25,14:893,500:-112.65,-40.9734,-33.4476,-72.0313,0,-67.8169	1/1:79:0,79,0:0:0:79,0:2762,0:-245.026,-23.7814,0,-245.026,-23.7814,-245.026	1/1:130:0,130,0:0:0:130,0:4567,0:-408.045,-39.1339,0,-408.045,-39.1339,-408.045	1/2:247:0,135,112:0:0:135,112:4786,4012:-713.755,-325.592,-284.953,-388.518,0,-354.803	1/2:68:0,28,40:0:0:28,40:964,1432:-194.054,-116.085,-107.656,-77.9586,0,-65.9174	1/2:28:0,14,14:0:0:14,14:488,500:-80.4303,-41.0441,-36.8297,-39.7375,0,-35.5231	1/2:39:0,19,20:0:0:19,20:684,716:-114.317,-58.6228,-52.9032,-56.0529,0,-50.0323	1/2:195:0,114,81:0:0:114,81:4054,2892:-562.077,-235.258,-200.94,-326.815,0,-302.431	1/2:152:0,56,95:0:0:56,95:1990,3396:-435.839,-275.698,-258.84,-160.137,0,-131.539	1/2:115:0,63,52:0:0:63,52:2233,1860:-332.467,-151.94,-132.975,-180.882,0,-165.228	1/2:28:0,14,14:0:0:14,14:500,504:-81.961,-41.431,-37.2166,-40.8873,0,-36.6728	1/2:87:0,40,46:0:0:40,46:1410,1632:-244.66,-131.817,-119.775,-112.862,0,-99.0144	1/1:73:0,73,0:0:0:73,0:2593,0:-229.56,-21.9752,0,-229.56,-21.9752,-229.56	1/1:46:0,46,0:0:0:46,0:1635,0:-146.955,-13.8474,0,-146.955,-13.8474,-146.955	1/1:56:0,56,0:0:0:56,0:1987,0:-178.743,-16.8577,0,-178.743,-16.8577,-178.743	1/1:55:0,55,0:0:0:55,0:1949,0:-173.224,-16.5567,0,-173.224,-16.5567,-173.224	1/1:38:0,38,0:0:0:38,0:1343,0:-119.831,-11.4391,0,-119.831,-11.4391,-119.831	1/1:35:0,35,0:0:0:35,0:1254,0:-112.55,-10.5361,0,-112.55,-10.5361,-112.55	1/2:30:0,12,18:0:0:12,18:415,640:-85.9587,-52.444,-48.8316,-33.863,0,-28.4445	1/2:157:0,73,84:0:0:73,84:2590,3016:-455.274,-244.794,-222.819,-210.835,0,-185.548	1/2:269:0,123,146:0:0:123,146:4369,5240:-780.178,-426.862,-389.835,-353.671,0,-309.721	1/2:160:0,49,111:0:0:49,111:1727,3980:-465.065,-324.88,-310.13,-140.538,0,-107.124	1/1:202:0,202,0:0:0:202,0:7133,0:-638.829,-60.8081,0,-638.829,-60.8081,-638.829	1/2:21:0,19,2:0:0:19,2:684,72:-61.4049,-6.23141,-0.511843,-55.5328,0,-54.9307	1/2:75:0,22,53:0:0:22,53:766,1903:-216.324,-155.094,-148.471,-61.5773,0,-45.6227	1/1:302:0,302,0:0:0:302,0:10734,0:-963.667,-90.9111,0,-963.667,-90.9111,-963.667	1/2:207:0,92,115:0:0:92,115:3287,4124:-601.592,-336.184,-308.49,-265.763,0,-231.145	1/2:39:0,14,25:0:0:14,25:504,884:-113.224,-72.2468,-68.0324,-41.3339,0,-33.8082	1/2:424:1,198,225:1:27:198,225:7018,8044:-1222.67,-653.617,-596.141,-567.311,0,-501.707	1/2:73:0,40,33:0:0:40,33:1428,1184:-212.065,-96.5916,-84.5504,-115.829,0,-105.895	1/1:74:0,74,0:0:0:74,0:2641,0:-237.385,-22.2762,0,-237.385,-22.2762,-237.385	1/1:5:0,5,0:0:0:5,0:180,0:-16.4978,-1.50515,0,-16.4978,-1.50515,-16.4978	1/2:9:0,2,7:0:0:2,7:70,252:-26.5176,-20.8417,-20.2397,-6.02695,0,-3.91974	1/1:8:0,8,0:0:0:8,0:264,0:-23.9706,-2.40824,0,-23.9706,-2.40824,-23.9706	1/1:4:0,4,0:0:0:4,0:136,0:-12.5179,-1.20412,0,-12.5179,-1.20412,-12.5179	1/1:1:0,1,0:0:0:1,0:36,0:-3.57877,-0.30103,0,-3.57877,-0.30103,-3.57877	1/1:165:0,165,0:0:0:165,0:5822,0:-521.636,-49.67,0,-521.636,-49.67,-521.636	1/2:247:0,187,60:0:0:187,60:6639,2152:-711.445,-175.029,-118.737,-536.413,0,-518.351	1/2:28:0,13,15:0:0:13,15:468,540:-82.0012,-44.3658,-40.4524,-37.9925,0,-33.477	2/2:2:0,0,2:0:0:0,2:0,72:-6.83347,-6.83347,-6.83347,-0.60206,-0.60206,0	1/2:66:0,43,23:0:0:43,23:1527,828:-191.667,-67.7029,-54.7586,-124.321,0,-117.397	1/2:22:0,12,10:0:0:12,10:430,356:-64.191,-29.2472,-25.6348,-35.248,0,-32.2377	1/2:212:0,92,119:0:0:92,119:3276,4272:-611.68,-347.585,-319.891,-264.114,0,-228.291	1/2:76:0,35,41:0:0:35,41:1244,1472:-221.339,-120.329,-109.793,-101.365,0,-89.0231	1/1:39:0,39,0:0:0:39,0:1384,0:-123.933,-11.7402,0,-123.933,-11.7402,-123.933	1/2:113:0,36,77:0:0:36,77:1288,2760:-329.808,-224.977,-214.14,-104.829,0,-81.6494	1/1:130:0,129,0:0:0:129,0:4566,0:-406.626,-38.8329,0,-406.626,-38.8329,-406.626	1/2:219:0,118,101:0:0:118,101:4179,3605:-633.253,-293.975,-258.454,-339.632,0,-309.228	1/2:148:0,47,101:0:0:47,101:1686,3624:-432.797,-295.571,-281.423,-137.583,0,-107.179	1/1:174:0,174,0:0:0:174,0:6182,0:-553.476,-52.3792,0,-553.476,-52.3792,-553.476	1/2:97:0,41,56:0:0:41,56:1455,2000:-281.434,-163.117,-150.774,-118.673,0,-101.815	1/2:8:0,3,5:0:0:3,5:108,176:-23.3214,-14.6781,-13.775,-8.99626,0,-7.49111	1/2:122:0,60,62:0:0:60,62:2144,2212:-353.699,-180.176,-162.114,-173.879,0,-155.215	1/1:25:0,25,0:0:0:25,0:898,0:-81.0582,-7.52575,0,-81.0582,-7.52575,-81.0582	1/1:1:0,1,0:0:0:1,0:36,0:-3.57877,-0.30103,0,-3.57877,-0.30103,-3.57877	1/1:162:0,162,0:0:0:162,0:5773,0:-516.834,-48.7669,0,-516.834,-48.7669,-51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chr10	3520861	.	C	T	27435.5	PASS	AB=0.482599;ABP=18.9556;AC=48;AF=0.255319;AN=188;AO=2946;CIGAR=1X;DP=11085;DPB=11085;DPRA=1.67276;EPP=5973.24;EPPR=16965;GTI=0;LEN=1;MEANALT=1.03448;MQM=27.41;MQMR=43.2427;NS=94;NUMALT=1;ODDS=0.549356;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105729;QR=290121;RO=8136;RPL=50;RPP=5973.24;RPPR=16965;RPR=2896;RUN=1;SAF=2946;SAP=6400.17;SAR=0;SRF=8136;SRP=17670.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:93:50,43:50:1776:43:1525:-76.1313,0,-125.746	0/0:118:118,0:118:4232:0:0:0,-35.5215,-363.615	0/0:174:174,0:174:6219:0:0:0,-52.3792,-539.226	0/1:271:136,135:136:4842:135:4844:-240.199,0,-344.47	0/1:100:56,44:56:1999:44:1571:-77.131,0,-144.351	0/1:15:10,5:10:347:5:171:-7.59999,0,-25.4446	0/1:71:47,24:47:1680:24:860:-35.8649,0,-127.986	0/1:235:117,118:117:4159:118:4235:-218.406,0,-289.69	0/1:166:94,72:94:3352:72:2592:-127.439,0,-240.024	0/1:127:81,46:81:2883:46:1644:-72.0228,0,-216.406	0/1:34:17,17:17:589:17:612:-30.4682,0,-42.0577	0/1:102:53,49:53:1904:49:1751:-88.8438,0,-134.33	0/0:93:93,0:93:3335:0:0:0,-27.9958,-288.488	0/0:64:64,0:64:2287:0:0:0,-19.2659,-199.509	0/0:72:72,0:72:2580:0:0:0,-21.6742,-227.843	0/0:52:52,0:52:1864:0:0:0,-15.6536,-163.681	0/0:26:26,0:26:936:0:0:0,-7.82678,-81.731	0/0:46:46,0:46:1652:0:0:0,-13.8474,-141.979	0/1:27:8,19:8:284:19:675:-38.5119,0,-16.9782	0/1:225:111,114:111:3966:114:4092:-204.152,0,-281.813	0/1:193:88,105:88:3128:105:3758:-199.465,0,-214.398	0/1:212:87,125:87:3090:125:4500:-233.668,0,-207.252	0/0:183:182,1:182:6483:1:36:0,-52.4399,-568.977	0/0:114:107,7:107:3802:7:252:0,-16.8057,-313.52	0/1:124:71,52:71:2522:52:1864:-90.8805,0,-183.915	0/0:369:368,1:368:13108:1:36:0,-108.431,-1161.5	0/1:303:150,153:150:5342:153:5496:-284.688,0,-375.869	0/1:32:20,12:20:716:12:432:-20.1916,0,-53.7038	0/1:318:154,164:154:5507:164:5892:-295.356,0,-391.047	0/1:139:95,44:95:3400:44:1584:-65.6989,0,-254.556	0/0:150:150,0:150:5344:0:0:0,-45.1545,-473.774	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.5345	0/1:12:10,2:10:352:2:72:-1.58642,0,-27.0179	0/0:7:6,0:6:208:0:0:0,-1.80618,-18.2674	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.4807	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.4091	0/0:196:196,0:196:7002:0:0:0,-59.0019,-621.326	0/1:203:89,114:89:3171:114:4104:-217.679,0,-215.88	0/1:46:27,19:27:964:19:684:-31.8983,0,-69.8084	0/1:4:3,1:3:108:1:36:-1.53208,0,-8.6547	0/1:128:63,65:63:2243:65:2321:-119.813,0,-158.315	0/1:37:20,17:20:720:17:612:-30.6709,0,-52.5988	0/1:284:137,147:137:4880:147:5262:-274.142,0,-341.593	0/1:66:38,28:38:1349:28:1004:-46.8312,0,-99.2961	0/0:62:62,0:62:2224:0:0:0,-18.6639,-196.155	0/1:147:74,73:74:2644:73:2620:-130.3,0,-190.797	0/0:187:187,0:187:6661:0:0:0,-56.2926,-574.681	0/1:239:109,130:109:3887:130:4664:-237.543,0,-272.561	0/1:136:74,62:74:2636:62:2224:-106.961,0,-192.145	0/0:128:128,0:128:4567:0:0:0,-38.5318,-402.716	0/1:140:76,64:76:2727:64:2304:-110.352,0,-198.68	0/1:7:4,3:4:144:3:108:-5.05214,0,-11.0223	0/1:157:89,68:89:3192:68:2448:-118.032,0,-227.663	0/0:77:77,0:77:2731:0:0:0,-23.1793,-242.131	0/0:13:13,0:13:468:0:0:0,-3.91339,-40.1898	0/0:211:211,0:211:7500:0:0:0,-63.5173,-657.749	0/1:78:43,35:43:1544:35:1260:-60.2075,0,-112.894	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.3798	0/1:17:10,7:10:360:7:252:-11.9136,0,-27.3405	0/1:55:22,33:22:788:33:1188:-64.2353,0,-52.6394	0/1:81:45,36:45:1608:36:1296:-61.7693,0,-118.1	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.2231	0/1:286:127,159:127:4540:159:5701:-291.802,0,-316.992	0/0:346:345,1:345:12282:1:36:0,-101.42,-1081.87	0/1:54:21,32:21:748:32:1148:-62.288,0,-49.087	0/0:188:186,2:186:6656:2:72:0,-51.3974,-581.078	0/1:207:135,72:135:4803:72:2592:-109.551,0,-360.473	0/0:232:230,2:230:8198:2:72:0,-64.7234,-716.446	0/0:34:34,0:34:1220:0:0:0,-10.235,-105.549	0/0:27:27,0:27:955:0:0:0,-8.12781,-82.3033	0/0:53:53,0:53:1873:0:0:0,-15.9546,-166.943	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.4235	0/0:112:111,1:111:3952:1:36:0,-30.9792,-337.74	0/0:164:164,0:164:5846:0:0:0,-49.3689,-506.835	0/0:218:218,0:218:7760:0:0:0,-65.6245,-679.495	0/0:200:200,0:200:7104:0:0:0,-60.206,-629.154	0/0:230:230,0:230:8182:0:0:0,-69.2369,-707.15	0/0:132:130,2:130:4634:2:72:0,-34.5372,-397.596	0/0:19:19,0:19:680:0:0:0,-5.71957,-59.483	0/0:177:175,2:175:6245:2:72:0,-48.0835,-541.74	0/1:110:50,60:50:1787:60:2152:-113.885,0,-122.026	0/1:364:210,154:210:7475:154:5536:-257.001,0,-548.447	0/0:61:61,0:61:2184:0:0:0,-18.3628,-193.094	0/0:74:74,0:74:2644:0:0:0,-22.2762,-234.24	0/0:56:56,0:56:2004:0:0:0,-16.8577,-176.158	0/1:140:69,71:69:2463:71:2556:-130.058,0,-175.955	0/0:29:29,0:29:1040:0:0:0,-8.72987,-90.015	0/1:70:38,32:38:1364:32:1152:-57.5232,0,-97.2873	0/1:59:33,26:33:1184:26:919:-44.8016,0,-84.9917	0/1:27:14,13:14:504:13:464:-24.3297,0,-36.6926	0/1:55:33,22:33:1161:22:792:-37.3062,0,-86.0951	0/1:67:27,40:27:964:40:1440:-75.7617,0,-64.5788	0/0:169:168,1:168:5982:1:36:0,-48.2255,-526.961	0/0:122:122,0:122:4362:0:0:0,-36.7257,-385.362
chr10	3557724	.	T	A	47157.6	PASS	AB=0.532283;ABP=44.37;AC=50;AF=0.265957;AN=188;AO=2443;CIGAR=1X;DP=8821;DPB=8821;DPRA=0.938306;EPP=5033.61;EPPR=13811.4;GTI=0;LEN=1;MEANALT=1.07143;MQM=44.9758;MQMR=59.5877;NS=94;NUMALT=1;ODDS=2.16199;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87242;QR=227545;RO=6371;RPL=1036;RPP=125.353;RPPR=34.3022;RPR=1407;RUN=1;SAF=1068;SAP=86.784;SAR=1375;SRF=3340;SRP=35.5538;SRR=3031;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:15,26:15:532:26:922:-63.7613,0,-35.7082	0/0:108:108,0:108:3861:0:0:0,-32.5112,-347.574	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.019	0/1:121:62,59:62:2209:59:2109:-135.681,0,-162.632	0/1:54:29,25:29:1040:25:900:-52.5999,0,-77.6587	0/1:39:9,30:9:320:30:1072:-73.7881,0,-17.4022	0/1:87:36,51:36:1279:51:1819:-119.284,0,-89.2052	0/1:96:46,50:46:1644:50:1792:-105.126,0,-118.175	0/1:77:32,45:32:1136:45:1603:-109.687,0,-79.3696	0/1:45:20,25:20:716:25:900:-59.1612,0,-51.2107	0/1:151:80,71:80:2872:71:2535:-163.396,0,-213.238	0/1:171:81,90:81:2892:90:3193:-200.754,0,-208.919	0/0:192:192,0:192:6844:0:0:0,-57.7978,-616.011	0/0:158:158,0:158:5626:0:0:0,-47.5627,-506.42	0/0:180:178,1:178:6351:1:36:0,-50.6456,-568.063	0/0:153:153,0:153:5449:0:0:0,-46.0576,-490.515	0/0:173:172,0:172:6130:0:0:0,-51.7772,-551.337	0/0:154:153,0:153:5450:0:0:0,-46.0576,-489.535	0/1:110:54,56:54:1928:56:2016:-121.701,0,-140.176	0/1:124:53,71:53:1883:71:2552:-154.823,0,-132.363	0/1:126:42,84:42:1491:84:2977:-184.58,0,-96.5397	0/1:31:9,22:9:324:22:784:-54.2086,0,-20.1739	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1482	0/0:69:64,5:64:2281:5:176:0,-7.70904,-191.679	0/1:40:21,19:21:756:19:669:-40.1115,0,-56.326	0/0:146:146,0:146:5211:0:0:0,-43.9504,-469.038	0/1:140:58,82:58:2069:82:2931:-187.163,0,-144.303	0/1:86:47,39:47:1688:39:1400:-89.1412,0,-126.317	0/1:170:61,109:61:2184:109:3900:-254.681,0,-145.651	0/1:44:21,22:21:752:22:777:-45.5623,0,-54.6884	0/0:69:68,1:68:2428:1:36:0,-18.3042,-214.443	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:10:4,6:4:140:6:216:-14.3613,0,-9.93428	0/0:407:406,0:406:14515:0:0:0,-122.218,-1305.56	0/1:53:32,21:32:1148:21:748:-43.5013,0,-87.5584	0/1:160:67,93:67:2388:93:3324:-201.355,0,-166.995	0/1:2:1,1:1:36:1:36:-1.86485,0,-2.99621	0/1:97:48,49:48:1705:49:1752:-104.569,0,-124.523	0/1:82:51,30:51:1811:30:1076:-60.1467,0,-137.9	0/1:104:42,62:42:1508:62:2228:-155.19,0,-104.703	0/1:184:101,83:101:3620:83:2944:-182.215,0,-270.591	0/0:138:138,0:138:4932:0:0:0,-41.5421,-443.909	0/1:58:24,34:24:860:34:1212:-80.9584,0,-60.2621	0/0:47:47,0:47:1662:0:0:0,-14.1484,-149.837	0/1:82:36,46:36:1276:46:1633:-95.0395,0,-90.0702	0/1:62:31,31:31:1096:31:1108:-70.5153,0,-80.115	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.144	0/1:106:50,56:50:1787:56:2001:-126.047,0,-128.998	0/1:4:1,3:1:36:3:108:-7.98469,0,-2.39415	0/1:89:45,44:45:1620:44:1580:-92.2474,0,-118.928	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7726	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.23	0/1:53:19,34:19:684:34:1211:-79.92,0,-45.9295	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:44:24,20:24:852:20:720:-41.6446,0,-63.7551	0/1:183:93,90:93:3317:90:3222:-207.938,0,-243.618	0/1:8:3,5:3:108:5:180:-13.2701,0,-7.66693	0/1:66:30,36:30:1080:36:1274:-86.5553,0,-77.6453	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.309	0/1:34:22,12:22:788:12:424:-26.498,0,-60.9747	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:94:47,47:47:1688:47:1682:-107.011,0,-123.854	0/0:62:61,1:61:2192:1:36:0,-16.0153,-194.855	0/0:68:68,0:68:2394:0:0:0,-20.47,-215.7	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.387	0/0:188:188,0:188:6733:0:0:0,-56.5936,-605.915	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.413	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.14	0/0:115:115,0:115:4105:0:0:0,-34.6184,-369.592	0/0:116:113,2:113:4018:2:72:0,-28.1647,-354.417	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.865	0/0:83:83,0:83:2948:0:0:0,-24.9855,-265.518	0/0:13:13,0:13:464:0:0:0,-3.91339,-41.7779	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.067	0/1:89:38,51:38:1364:51:1816:-103.044,0,-96.2514	0/1:184:84,100:84:3008:100:3583:-227.396,0,-215.392	0/0:178:178,0:178:6349:0:0:0,-53.5833,-571.416	0/0:120:120,0:120:4288:0:0:0,-36.1236,-386.08	0/0:214:214,0:214:7673:0:0:0,-64.4204,-690.583	0/1:270:147,123:147:5252:123:4412:-274.656,0,-391.504	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.082	0/1:135:67,68:67:2396:68:2427:-146.753,0,-175.241	0/1:126:60,66:60:2140:66:2359:-144.371,0,-154.937	0/1:112:49,63:49:1748:63:2237:-134.163,0,-123.878	0/1:176:96,80:96:3421:80:2838:-175.769,0,-255.062	0/1:133:37,96:37:1324:96:3432:-241.219,0,-79.4127	0/0:54:53,1:53:1908:1:36:0,-13.607,-168.486	0/0:243:243,0:243:8657:0:0:0,-73.1503,-779.013
chr10	3577505	.	CTTTG	GTTTA,GTTTG	125365	PASS	AB=0.504438,0.493172;ABP=4.01263,5.38268;AC=135,51;AF=0.725806,0.274194;AN=186;AO=7755,2901;CIGAR=1X3M1X,1X4M;DP=10673;DPB=10674;DPRA=0,1.2199;EPP=16842.8,6302.45;EPPR=0;GTI=2;LEN=5,1;MEANALT=1.75269,2.24074;MQM=21.4404,53.8956;MQMR=0;NS=93;NUMALT=2;ODDS=0.0165854;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=90,90;PQR=0;PRO=0;QA=274630,103568;QR=0;RO=0;RPL=7755,2901;RPP=16842.8,6302.45;RPPR=0;RPR=0,0;RUN=1,1;SAF=7755,2901;SAP=16842.8,6302.45;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:31:0,12,19:0:0:12,19:426,684:-74.2071,-55.3691,-51.7567,-19.1032,0,-13.3836	1/1:170:0,170,0:0:0:170,0:6022,0:-325.268,-51.1751,0,-325.268,-51.1751,-325.268	1/1:104:0,103,0:0:0:103,0:3618,0:-193.596,-31.0061,0,-193.596,-31.0061,-193.596	1/2:235:0,125,110:0:0:125,110:4433,3926:-517.571,-319.922,-282.294,-197.877,0,-164.763	1/2:49:0,20,29:0:0:20,29:713,1036:-116.101,-84.7436,-78.723,-31.6266,0,-22.8967	1/2:90:0,45,45:0:0:45,45:1584,1593:-198.815,-128.252,-114.706,-70.8416,0,-57.2952	1/2:163:0,89,74:0:0:89,74:3167,2660:-356.709,-217.079,-190.287,-139.921,0,-117.645	1/2:172:0,91,80:0:0:91,80:3185,2844:-373.724,-227.756,-200.362,-145.983,0,-121.9	1/2:151:0,69,82:0:0:69,82:2431,2905:-343.135,-233.382,-212.611,-110.027,0,-85.3422	1/2:236:0,125,111:0:0:125,111:4445,3964:-525.974,-323.079,-285.451,-203.184,0,-169.77	1/2:73:0,43,30:0:0:43,30:1526,1080:-156.091,-88.4067,-75.4624,-67.9814,0,-58.9505	1/2:67:0,32,35:0:0:32,35:1141,1256:-151.657,-101.09,-91.4569,-50.8456,0,-40.3095	1/1:67:0,67,0:0:0:67,0:2372,0:-128.352,-20.169,0,-128.352,-20.169,-128.352	1/1:126:0,126,0:0:0:126,0:4466,0:-241.697,-37.9298,0,-241.697,-37.9298,-241.697	1/1:70:0,70,0:0:0:70,0:2494,0:-133.632,-21.0721,0,-133.632,-21.0721,-133.632	1/1:59:0,59,0:0:0:59,0:2096,0:-110.865,-17.7608,0,-110.865,-17.7608,-110.865	1/1:111:0,111,0:0:0:111,0:3928,0:-208.96,-33.4143,0,-208.96,-33.4143,-208.96	1/1:63:0,63,0:0:0:63,0:2246,0:-119.59,-18.9649,0,-119.59,-18.9649,-119.59	1/2:30:0,16,14:0:0:16,14:559,496:-65.204,-40.2414,-35.4249,-25.246,0,-21.0316	1/2:195:0,105,89:0:0:105,89:3740,3192:-427.438,-260.234,-228.626,-167.225,0,-140.433	1/2:172:0,83,89:0:0:83,89:2924,3204:-392.839,-261.491,-236.506,-131.63,0,-104.838	1/2:101:0,34,67:0:0:34,67:1222,2393:-251.111,-195,-184.765,-56.3743,0,-36.2053	1/1:53:0,53,0:0:0:53,0:1887,0:-99.6148,-15.9546,0,-99.6148,-15.9546,-99.6148	1/2:130:0,112,17:0:0:112,17:3939,608:-226.989,-49.6794,-15.964,-177.431,0,-172.313	1/2:41:0,13,28:0:0:13,28:457,1008:-104.972,-82.4566,-78.5432,-22.7842,0,-14.3554	1/1:538:0,538,0:0:0:538,0:19033,0:-1022.7,-161.954,0,-1022.7,-161.954,-1022.7	1/2:208:0,97,110:0:0:97,110:3451,3899:-469.765,-317.094,-287.894,-152.551,0,-119.438	1/2:24:0,12,11:0:0:12,11:429,396:-52.4926,-32.371,-28.7587,-20.1445,0,-16.8332	1/2:215:0,110,105:0:0:110,105:3912,3756:-484.522,-305.757,-272.644,-179.052,0,-147.444	1/2:215:0,111,103:0:0:111,103:3916,3678:-472.978,-298.962,-265.548,-173.963,0,-142.957	1/1:127:0,126,1:0:0:126,1:4473,36:-238.615,-37.9298,0,-235.679,-34.6351,-235.378	1/1:7:0,7,0:0:0:7,0:242,0:-13.2877,-2.10721,0,-13.2877,-2.10721,-13.2877	1/2:11:0,6,5:0:0:6,5:216,180:-24.3712,-14.9916,-13.1854,-9.67004,0,-8.16489	1/1:5:0,5,0:0:0:5,0:166,0:-9.46729,-1.50515,0,-9.46729,-1.50515,-9.46729	1/1:14:0,14,0:0:0:14,0:504,0:-26.4996,-4.21442,0,-26.4996,-4.21442,-26.4996	1/2:8:0,3,5:0:0:3,5:108,176:-19.1565,-14.4779,-13.5748,-4.93935,0,-3.4342	1/1:243:0,242,1:0:0:242,1:8593,36:-459.528,-72.8493,0,-456.592,-69.5546,-456.291	1/2:228:0,134,93:0:0:134,93:4719,3309:-480.504,-268.935,-228.597,-211.532,0,-183.536	1/2:49:0,31,18:0:0:31,18:1106,628:-100.39,-50.4304,-41.0985,-50.2545,0,-44.8359	.:.:.:.:.:.:.:.	1/2:164:0,92,72:0:0:92,72:3269,2563:-357.389,-208.82,-181.125,-148.862,0,-127.187	1/2:36:0,16,20:0:0:16,20:554,720:-85.9881,-59.0612,-54.2447,-27.2094,0,-21.1888	1/2:121:0,66,55:0:0:66,55:2354,1950:-265.07,-158.861,-138.993,-106.498,0,-89.9415	1/2:50:0,26,24:0:0:26,24:932,860:-111.183,-70.2752,-62.4484,-41.1932,0,-33.9685	1/1:59:0,59,0:0:0:59,0:2088,0:-112.528,-17.7608,0,-112.528,-17.7608,-112.528	1/2:106:0,47,59:0:0:47,59:1650,2101:-247.748,-171.422,-157.274,-76.6026,0,-58.8419	1/1:119:0,119,0:0:0:119,0:4217,0:-224.871,-35.8226,0,-224.871,-35.8226,-224.871	1/2:197:0,100,95:0:0:100,95:3542,3386:-433.805,-275.219,-245.116,-158.557,0,-129.959	1/2:191:0,91,100:0:0:91,100:3262,3565:-435.027,-290.641,-263.248,-144.665,0,-114.562	1/1:181:0,181,0:0:0:181,0:6442,0:-340.838,-54.4864,0,-340.838,-54.4864,-340.838	1/2:227:0,89,136:0:0:89,136:3166,4884:-538.98,-397.906,-371.114,-141.069,0,-100.129	1/2:18:0,11,7:0:0:11,7:385,243:-37.3004,-20.0857,-16.7744,-17.5075,0,-15.4003	1/2:124:0,68,56:0:0:68,56:2407,2008:-268.421,-161.908,-141.438,-106.801,0,-89.943	1/1:104:0,104,0:0:0:104,0:3677,0:-201.093,-31.3071,0,-201.093,-31.3071,-201.093	1/1:21:0,21,0:0:0:21,0:738,0:-39.5079,-6.32163,0,-39.5079,-6.32163,-39.5079	1/1:130:0,130,0:0:0:130,0:4576,0:-244.207,-39.1339,0,-244.207,-39.1339,-244.207	1/2:25:0,14,11:0:0:14,11:488,396:-54.5275,-32.6478,-28.4334,-22.1724,0,-18.8611	1/1:9:0,9,0:0:0:9,0:324,0:-18.2147,-2.70927,0,-18.2147,-2.70927,-18.2147	1/2:33:0,14,19:0:0:14,19:496,684:-78.0099,-56.1261,-51.9117,-22.1558,0,-16.4363	1/2:175:0,71,104:0:0:71,104:2481,3691:-413.815,-300.664,-279.291,-113.419,0,-82.1123	1/2:131:0,66,65:0:0:66,65:2341,2325:-296.017,-189.691,-169.823,-106.611,0,-87.0445	2/2:7:0,1,6:0:0:1,6:36,212:-19.023,-17.4663,-17.1653,-1.80618,-0.0206252,0	1/2:218:0,110,108:0:0:110,108:3922,3853:-486.926,-313.616,-280.502,-173.593,0,-141.082	1/1:291:0,289,2:0:0:289,2:10175,72:-553.473,-86.9977,0,-547.601,-80.7679,-546.999	1/2:160:0,87,71:0:0:87,71:3095,2548:-345.373,-207.56,-181.371,-137.738,0,-116.365	1/1:57:0,57,0:0:0:57,0:2014,0:-108.319,-17.1587,0,-108.319,-17.1587,-108.319	1/2:181:0,88,93:0:0:88,93:3129,3328:-411.115,-271.337,-244.846,-140.06,0,-112.064	1/1:178:0,176,2:0:0:176,2:6205,68:-330.913,-52.9813,0,-325.399,-47.1291,-324.797	1/1:37:0,37,0:0:0:37,0:1323,0:-69.6487,-11.1381,0,-69.6487,-11.1381,-69.6487	1/1:123:0,123,0:0:0:123,0:4334,0:-232.495,-37.0267,0,-232.495,-37.0267,-232.495	1/1:126:0,126,0:0:0:126,0:4438,0:-239.517,-37.9298,0,-239.517,-37.9298,-239.517	1/1:25:0,25,0:0:0:25,0:883,0:-46.7288,-7.52575,0,-46.7288,-7.52575,-46.7288	1/1:150:0,150,0:0:0:150,0:5282,0:-284.965,-45.1545,0,-284.965,-45.1545,-284.965	1/1:102:0,102,0:0:0:102,0:3621,0:-194.035,-30.7051,0,-194.035,-30.7051,-194.035	1/1:345:0,345,0:0:0:345,0:12166,0:-656.928,-103.855,0,-656.928,-103.855,-656.928	1/1:156:0,156,0:0:0:156,0:5552,0:-296.591,-46.9607,0,-296.591,-46.9607,-296.591	1/1:106:0,106,0:0:0:106,0:3738,0:-197.199,-31.9092,0,-197.199,-31.9092,-197.199	1/1:134:0,134,0:0:0:134,0:4774,0:-253.886,-40.338,0,-253.886,-40.338,-253.886	1/1:10:0,10,0:0:0:10,0:354,0:-18.9596,-3.0103,0,-18.9596,-3.0103,-18.9596	1/1:124:0,123,0:0:0:123,0:4398,0:-233.056,-37.0267,0,-233.056,-37.0267,-233.056	1/2:77:0,32,45:0:0:32,45:1127,1600:-178.861,-128.683,-119.05,-50.4453,0,-36.8989	1/2:219:0,103,116:0:0:103,116:3651,4161:-501.341,-339.203,-308.197,-162.417,0,-127.497	1/1:139:0,139,0:0:0:139,0:4921,0:-261.525,-41.8432,0,-261.525,-41.8432,-261.525	1/1:62:0,62,0:0:0:62,0:2211,0:-117.575,-18.6639,0,-117.575,-18.6639,-117.575	1/1:97:0,97,0:0:0:97,0:3458,0:-189.357,-29.1999,0,-189.357,-29.1999,-189.357	1/2:136:0,59,77:0:0:59,77:2087,2746:-320.989,-224.021,-206.26,-97.2449,0,-74.0656	1/1:30:0,30,0:0:0:30,0:1078,0:-58.833,-9.0309,0,-58.833,-9.0309,-58.833	1/2:71:0,34,37:0:0:34,37:1188,1299:-160.29,-104.351,-94.1158,-56.2174,0,-45.0793	1/2:83:0,45,38:0:0:45,38:1587,1342:-178.457,-107.933,-94.387,-70.8076,0,-59.3684	1/2:55:0,30,25:0:0:30,25:1066,892:-120.616,-72.6386,-63.6077,-48.2666,0,-40.7408	1/2:110:0,66,43:0:0:66,43:2327,1544:-230.627,-125.862,-105.994,-104.74,0,-91.7956	1/2:56:0,12,44:0:0:12,44:430,1584:-149.643,-129.482,-125.87,-20.4115,0,-7.16621	1/1:60:0,60,0:0:0:60,0:2116,0:-113.065,-18.0618,0,-113.065,-18.0618,-113.065	1/1:76:0,75,0:0:0:75,0:2666,0:-144.429,-22.5773,0,-144.429,-22.5773,-144.429
chr10	3577516	.	C	T	57803.8	PASS	AB=0.501034;ABP=3.06419;AC=135;AF=0.725806;AN=186;AO=7622;CIGAR=1X;DP=10531;DPB=10531;DPRA=0;EPP=16554;EPPR=6317.65;GTI=1;LEN=1;MEANALT=1.01075;MQM=21.4221;MQMR=53.8308;NS=93;NUMALT=1;ODDS=2.84446;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273067;QR=103729;RO=2908;RPL=7622;RPP=16554;RPPR=6317.65;RPR=0;RUN=1;SAF=7622;SAP=16554;SAR=0;SRF=2908;SRP=6317.65;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:19,12:19:676:12:432:-13.4118,0,-51.0873	1/1:169:0,169:0:0:169:6047:-323.757,-50.8741,0	1/1:101:0,101:0:0:101:3619:-190.957,-30.404,0	0/1:234:110,124:110:3940:124:4452:-164.018,0,-283.945	0/1:50:30,20:30:1072:20:720:-22.6277,0,-81.6582	0/1:90:45,45:45:1604:45:1603:-57.4072,0,-115.68	0/1:163:75,88:75:2692:88:3147:-116.099,0,-193.165	0/1:171:81,90:81:2871:90:3224:-122.515,0,-202.26	0/1:147:79,68:79:2800:68:2431:-84.9097,0,-204.298	0/1:233:111,122:111:3933:122:4388:-165.536,0,-283.617	0/1:73:30,43:30:1072:43:1548:-59.0714,0,-74.7467	0/1:67:37,30:37:1277:30:1076:-36.8675,0,-93.4479	1/1:65:0,65:0:0:65:2327:-124.734,-19.567,0	1/1:126:0,126:0:0:126:4511:-242.503,-37.9298,0	1/1:70:0,70:0:0:70:2512:-134.175,-21.0721,0	1/1:59:0,59:0:0:59:2124:-111.006,-17.7608,0	1/1:109:0,109:0:0:109:3885:-205.556,-32.8123,0	1/1:63:0,63:0:0:63:2243:-119.562,-18.9649,0	0/1:30:14,16:14:500:16:576:-21.1364,0,-35.7854	0/1:194:90,104:90:3214:104:3727:-139.467,0,-230.748	0/1:170:89,81:89:3181:81:2904:-102.438,0,-235.043	0/1:98:64,34:64:2280:34:1216:-37.0793,0,-175.299	1/1:53:0,53:0:0:53:1884:-99.4059,-15.9546,0	0/1:128:17,111:17:612:111:3979:-172.297,0,-16.8416	0/1:41:28,13:28:1004:13:468:-14.8503,0,-78.2091	1/1:526:1,525:1:36:525:18796:-994.795,-154.954,0	0/1:208:110,97:110:3940:97:3471:-119.589,0,-291.664	0/1:24:12,12:12:419:12:432:-16.8054,0,-30.7635	0/1:215:106,109:106:3808:109:3908:-146.386,0,-277.499	0/1:211:103,108:103:3696:108:3884:-139.401,0,-266.347	1/1:122:2,120:2:72:120:4307:-220.338,-30.408,0	1/1:7:0,7:0:0:7:252:-13.3541,-2.10721,0	0/1:11:5,6:5:165:6:216:-8.16489,0,-11.8512	1/1:5:0,5:0:0:5:176:-9.66917,-1.50515,0	1/1:14:0,14:0:0:14:495:-26.4241,-4.21442,0	0/1:8:5,3:5:167:3:108:-3.4342,0,-12.7879	1/1:241:1,240:1:36:240:8603:-453.223,-68.9526,0	0/1:223:93,130:93:3323:130:4664:-178.152,0,-231.307	0/1:49:18,31:18:644:31:1116:-44.953,0,-42.2414	.:.:.:.:.:.:.:.	0/1:164:73,91:73:2590:91:3272:-125.541,0,-183.511	0/1:36:21,15:21:747:15:516:-17.9524,0,-56.4831	0/1:118:52,66:52:1817:66:2368:-90.9724,0,-128.16	0/1:50:24,26:24:841:26:932:-33.9656,0,-60.7366	1/1:55:0,55:0:0:55:1972:-104.649,-16.5567,0	0/1:106:59,47:59:2112:47:1680:-59.2106,0,-158.266	1/1:116:0,116:0:0:116:4138:-219.578,-34.9195,0	0/1:196:97,99:97:3480:99:3560:-128.554,0,-251.121	0/1:190:100,90:100:3554:90:3236:-113.285,0,-262.604	1/1:177:0,177:0:0:177:6364:-333.666,-53.2823,0	0/1:227:139,88:139:4962:88:3164:-98.3909,0,-377.433	0/1:16:7,9:7:252:9:324:-12.2935,0,-18.1959	0/1:122:55,67:55:1976:67:2404:-89.0935,0,-139.149	1/1:103:0,103:0:0:103:3700:-199.764,-31.0061,0	1/1:21:0,21:0:0:21:752:-39.6274,-6.32163,0	1/1:127:0,127:0:0:127:4533:-239.305,-38.2308,0	0/1:24:12,12:12:428:12:432:-15.5191,0,-31.6119	1/1:9:0,9:0:0:9:324:-18.2147,-2.70927,0	0/1:33:19,14:19:684:14:504:-16.4774,0,-51.9117	0/1:174:105,69:105:3755:69:2476:-78.7348,0,-285.242	0/1:131:65,66:65:2307:66:2372:-87.4086,0,-168.247	0/0:7:6,1:6:207:1:36:0,-0.0206251,-16.5477	0/1:216:107,109:107:3835:109:3920:-139.863,0,-278.821	1/1:282:2,280:2:63:280:10047:-532.256,-78.9101,0	0/1:159:73,86:73:2601:86:3075:-114.732,0,-185.921	1/1:57:0,57:0:0:57:2044:-108.492,-17.1587,0	0/1:176:91,85:91:3254:85:3052:-107.74,0,-239.694	1/1:178:2,176:2:72:176:6278:-326.03,-46.7515,0	1/1:37:0,37:0:0:37:1332:-69.6919,-11.1381,0	1/1:123:0,123:0:0:123:4403:-233.888,-37.0267,0	1/1:122:0,122:0:0:122:4342:-232.56,-36.7257,0	1/1:23:0,23:0:0:23:824:-43.2954,-6.92369,0	1/1:147:0,147:0:0:147:5255:-280.826,-44.2514,0	1/1:98:0,98:0:0:98:3495:-186.685,-29.5009,0	1/1:339:0,339:0:0:339:12149:-648.185,-102.049,0	1/1:154:0,154:0:0:154:5536:-293.374,-46.3586,0	1/1:103:0,103:0:0:103:3704:-191.224,-31.0061,0	1/1:131:0,131:0:0:131:4685:-245.911,-39.4349,0	1/1:10:0,10:0:0:10:360:-18.9879,-3.0103,0	1/1:124:0,124:0:0:124:4425:-235.338,-37.3277,0	0/1:76:45,31:45:1604:31:1107:-35.3831,0,-119.489	0/1:219:116,103:116:4131:103:3691:-127.681,0,-305.531	1/1:136:0,136:0:0:136:4871:-255.208,-40.9401,0	1/1:62:0,62:0:0:62:2224:-117.95,-18.6639,0	1/1:96:0,96:0:0:96:3447:-187.866,-28.8989,0	0/1:133:76,57:76:2720:57:2035:-70.9342,0,-204.826	1/1:29:0,29:0:0:29:1044:-57.2273,-8.72987,0	0/1:68:34,34:34:1216:34:1212:-47.2435,0,-87.302	0/1:81:38,43:38:1364:43:1528:-56.3125,0,-96.527	0/1:53:26,27:26:936:27:968:-36.0887,0,-68.1261	0/1:109:45,64:45:1607:64:2292:-88.8076,0,-111.771	0/1:56:44,12:44:1580:12:428:-7.15466,0,-125.511	1/1:58:0,58:0:0:58:2080:-109.004,-17.4597,0	1/1:75:0,75:0:0:75:2684:-146.312,-22.5773,0
chr10	3577634	.	TCCCG	TCCCA,TACCA	267940	PASS	AB=0.448135,0.546066;ABP=180.28,142.853;AC=137,51;AF=0.728723,0.271277;AN=188;AO=8633,4174;CIGAR=4M1X,1M1X2M1X;DP=12876;DPB=12875.2;DPRA=46.1398,1.69663;EPP=18749.3,9066.74;EPPR=13.8677;GTI=5;LEN=1,5;MEANALT=2.29032,2.7541;MQM=59.9372,59.7573;MQMR=60;NS=94;NUMALT=2;ODDS=1.28713;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=306817,146723;QR=173;RO=5;RPL=8633,4174;RPP=18749.3,9066.74;RPPR=13.8677;RPR=0,0;RUN=1,1;SAF=0,0;SAP=18749.3,9066.74;SAR=8633,4174;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:90:0,40,50:0:0:40,50:1409,1743:-256.794,-142.081,-130.039,-115.064,0,-100.013	1/1:104:0,104,0:0:0:104,0:3720,0:-335.002,-31.3071,0,-335.002,-31.3071,-335.002	1/1:369:0,365,2:0:0:365,2:12999,71:-1167.04,-109.876,0,-1161.25,-104.056,-1160.65	1/2:388:0,213,175:0:0:213,175:7592,6161:-1120.74,-501.893,-437.774,-619.2,0,-566.52	1/2:103:0,38,64:0:0:38,64:1368,2244:-293.943,-182.317,-170.878,-111.622,0,-92.3559	1/2:44:0,16,28:0:0:16,28:576,982:-127.258,-80.2564,-75.4399,-47.3585,0,-38.9297	1/2:171:0,83,88:0:0:83,88:2961,3081:-492.412,-251.028,-226.043,-241.737,0,-215.247	1/2:228:0,105,119:0:0:105,119:3699,4165:-640.039,-338.886,-307.278,-301.188,0,-265.365	1/2:179:0,79,100:0:0:79,100:2794,3466:-509.607,-282.043,-258.262,-227.914,0,-197.811	1/2:139:0,71,68:0:0:71,68:2544,2377:-401.093,-193.609,-172.236,-207.837,0,-187.367	1/2:23:0,9,13:0:0:9,13:324,462:-64.0813,-37.6429,-34.9336,-26.4368,0,-22.5234	1/2:70:0,29,41:0:0:29,41:1040,1441:-202.461,-117.632,-108.902,-85.1845,0,-72.8423	1/1:66:0,65,0:0:0:65,0:2312,0:-207.979,-19.567,0,-207.979,-19.567,-207.979	1/1:32:0,32,0:0:0:32,0:1132,0:-102.189,-9.63296,0,-102.189,-9.63296,-102.189	1/1:65:0,65,0:0:0:65,0:2340,0:-210.859,-19.567,0,-210.859,-19.567,-210.859	1/1:66:0,66,0:0:0:66,0:2355,0:-212.19,-19.868,0,-212.19,-19.868,-212.19	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:29:0,28,0:0:0:28,0:989,0:-89.0201,-8.42884,0,-89.0201,-8.42884,-89.0201	1/2:15:0,8,7:0:0:8,7:280,252:-43.6976,-20.9217,-18.5135,-23.1311,0,-21.0239	1/2:311:2,84,225:2:71:84,225:3000,7961:-886.633,-642.645,-623.144,-238.806,0,-176.859	1/2:298:0,171,124:0:0:171,124:6041,4323:-843.32,-351.351,-299.875,-491.96,0,-454.632	1/2:259:0,68,189:0:0:68,189:2405,6665:-738.558,-542.676,-522.206,-195.876,0,-138.982	1/1:229:0,227,0:0:0:227,0:8051,0:-724.252,-68.3338,0,-724.252,-68.3338,-724.252	1/1:127:0,115,10:0:0:115,10:4079,347:-366.945,-34.6185,0,-338.739,-6.42302,-335.729	1/2:97:0,34,61:0:0:34,61:1208,2156:-273.907,-175.578,-165.343,-98.3245,0,-79.9617	1/1:405:0,402,3:0:0:402,3:14261,104:-1282.86,-121.014,0,-1274.41,-112.214,-1273.51	1/2:376:0,211,161:0:0:211,161:7556,5654:-1076.27,-460.194,-396.676,-616.109,0,-567.643	1/2:27:0,13,14:0:0:13,14:464,502:-79.1278,-41.3028,-37.3894,-38.1826,0,-33.9681	1/2:466:0,202,259:0:0:202,259:7198,9149:-1331.28,-744.992,-684.183,-586.307,0,-508.341	1/2:208:0,85,123:0:0:85,123:3027,4316:-597.805,-351.085,-325.498,-247.073,0,-210.047	1/1:177:0,175,1:0:0:175,1:6191,36:-556.961,-52.6803,0,-554.024,-49.7129,-553.723	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:21:0,7,10:0:0:7,10:252,354:-49.3965,-28.8329,-26.7257,-20.5635,0,-17.5532	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:19:0,5,13:0:0:5,13:180,445:-50.8003,-36.1087,-34.6036,-14.6935,0,-10.7801	1/1:146:1,145,0:1:36:145,0:5192,0:-463.821,-40.3521,0,-464.122,-43.6494,-467.059	1/2:251:0,119,132:0:0:119,132:4197,4645:-720.187,-378.45,-342.627,-342.09,0,-302.354	1/2:18:0,11,7:0:0:11,7:392,248:-52.5074,-20.5536,-17.2423,-32.3087,0,-30.2015	2/2:3:0,0,3:0:0:0,3:0,103:-9.6096,-9.6096,-9.6096,-0.90309,-0.90309,0	1/2:315:0,131,184:0:0:131,184:4646,6465:-904.629,-526.113,-486.679,-378.869,0,-323.479	1/2:23:0,18,5:0:0:18,5:640,163:-65.6606,-13.482,-8.06349,-52.5108,0,-51.0056	1/2:279:0,120,159:0:0:120,159:4264,5540:-798.303,-450.863,-414.74,-347.792,0,-299.929	1/2:47:0,20,27:0:0:20,27:712,961:-136.708,-78.678,-72.6574,-58.3861,0,-50.2582	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/2:150:0,79,70:0:0:79,70:2808,2465:-429.593,-200.766,-176.985,-228.928,0,-207.856	1/1:136:0,134,1:0:0:134,1:4742,35:-426.606,-40.338,0,-423.758,-37.4753,-423.457	1/2:295:0,111,183:0:0:111,183:3922,6462:-845.464,-526.063,-492.649,-319.394,0,-264.305	1/2:194:0,77,115:0:0:77,115:2752,4032:-552.37,-327.981,-304.802,-224.403,0,-189.784	1/1:168:0,165,2:0:0:165,2:5866,72:-527.719,-49.67,0,-521.844,-43.7419,-521.242	1/2:198:0,110,87:0:0:110,87:3933,3066:-570.414,-249.765,-216.652,-320.791,0,-294.601	1/2:10:0,7,3:0:0:7,3:252,106:-29.5526,-8.98601,-6.8788,-20.9217,0,-20.0187	1/2:198:0,90,107:0:0:90,107:3224,3785:-571.207,-308.274,-281.181,-262.939,0,-230.729	1/1:67:0,67,0:0:0:67,0:2339,0:-210.765,-20.169,0,-210.765,-20.169,-210.765	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/1:201:0,199,0:0:0:19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chr10	3638037	.	T	C	80890.7	PASS	AB=0.521308;ABP=29.6618;AC=54;AF=0.287234;AN=188;AO=3549;CIGAR=1X;DP=12228;DPB=12228;DPRA=1.07855;EPP=32.8939;EPPR=392.61;GTI=1;LEN=1;MEANALT=1.15152;MQM=54.6326;MQMR=53.1345;NS=94;NUMALT=1;ODDS=0.416465;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125971;QR=307771;RO=8667;RPL=9;RPP=7631.59;RPPR=18563.5;RPR=3540;RUN=1;SAF=1673;SAP=28.2242;SAR=1876;SRF=3740;SRP=356.02;SRR=4927;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:35,14:35:1256:14:504:-30.6662,0,-98.3429	0/0:125:124,1:124:4407:1:36:0,-34.0305,-389.488	0/0:149:149,0:149:5294:0:0:0,-44.8535,-472.933	0/1:179:100,79:100:3576:79:2806:-197.189,0,-267.024	0/1:54:28,25:28:996:25:900:-64.9219,0,-72.3368	0/1:79:33,46:33:1161:46:1616:-121.481,0,-80.1671	0/1:121:51,69:51:1807:69:2450:-183.392,0,-124.558	0/1:164:78,86:78:2741:86:3064:-226.02,0,-196.036	0/1:110:50,60:50:1775:60:2136:-159.225,0,-126.4	0/1:141:65,76:65:2296:76:2690:-198.711,0,-162.679	0/1:153:88,65:88:3125:65:2283:-158.61,0,-234.807	0/1:223:112,111:112:3976:111:3957:-288.23,0,-288.982	0/0:209:209,0:209:7449:0:0:0,-62.9153,-664.72	0/0:147:147,0:147:5232:0:0:0,-44.2514,-469.029	0/0:130:129,1:129:4612:1:36:0,-35.6312,-410.738	0/0:146:146,0:146:5201:0:0:0,-43.9504,-466.274	0/0:205:204,1:204:7197:1:36:0,-58.1901,-637.773	0/0:179:178,1:178:6281:1:36:0,-50.3634,-555.454	0/1:117:54,63:54:1928:63:2245:-166.58,0,-136.887	0/1:167:84,83:84:2996:83:2955:-215.356,0,-218.464	0/1:204:72,131:72:2552:131:4636:-355.111,0,-167.708	0/1:42:13,28:13:460:28:1000:-77.3015,0,-28.9799	0/0:95:94,1:94:3352:1:36:0,-25.0148,-297.41	0/1:107:96,11:96:3435:11:392:-3.35052,0,-275.221	0/1:73:37,36:37:1309:36:1271:-92.5379,0,-95.4811	0/0:257:256,1:256:9068:1:36:0,-73.884,-809.627	0/1:306:131,174:131:4635:174:6200:-464.47,0,-322.332	0/1:89:41,48:41:1467:48:1724:-128.349,0,-104.965	0/1:214:107,106:107:3828:106:3768:-274.553,0,-279.748	0/1:110:56,53:56:1969:53:1870:-134.752,0,-142.669	0/0:194:194,0:194:6891:0:0:0,-58.3998,-616.783	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.6084	0/1:13:5,8:5:180:8:288:-22.2895,0,-12.5701	0/0:6:6,0:6:204:0:0:0,-1.80618,-18.5279	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7788	0/1:11:5,6:5:180:6:216:-16.4709,0,-13.1678	0/0:433:433,0:433:15417:0:0:0,-130.346,-1383.39	0/1:82:38,44:38:1342:44:1572:-116.306,0,-95.1896	0/1:130:59,71:59:2103:71:2518:-186.965,0,-148.381	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:117:54,63:54:1916:63:2238:-166.074,0,-136.781	0/1:94:40,54:40:1420:54:1903:-142.798,0,-99.0776	0/1:166:79,87:79:2796:87:3090:-226.235,0,-200.771	0/1:334:163,171:163:5799:171:6057:-442.165,0,-419.348	0/0:125:124,0:124:4399:0:0:0,-37.3277,-394.727	0/1:93:34,59:34:1193:59:2087:-159.711,0,-79.5235	0/0:107:107,0:107:3816:0:0:0,-32.2102,-340.455	0/1:156:70,86:70:2500:86:3042:-225.905,0,-177.498	0/1:141:62,79:62:2200:79:2795:-208.243,0,-154.566	0/0:170:169,0:169:5976:0:0:0,-50.8741,-535.791	0/1:102:55,47:55:1949:47:1675:-120.176,0,-144.329	1/1:6:0,6:0:0:6:216:-19.7657,-1.80618,0	0/1:125:61,64:61:2167:64:2278:-166.279,0,-155.823	0/0:60:60,0:60:2117:0:0:0,-18.0618,-190.6	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.9779	0/0:91:91,0:91:3183:0:0:0,-27.3937,-285.798	0/1:62:28,34:28:996:34:1195:-89.0293,0,-71.1006	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2989	0/1:5:2,3:2:72:3:108:-8.55313,0,-5.31438	0/1:105:50,55:50:1787:55:1953:-144.222,0,-128.789	0/1:204:108,96:108:3876:96:3414:-245.22,0,-286.324	1/1:4:0,4:0:0:4:135:-12.4385,-1.20412,0	0/1:138:71,67:71:2471:67:2382:-172.735,0,-180.644	0/0:114:112,1:112:3968:1:36:0,-30.7028,-351.887	0/1:91:53,38:53:1884:38:1359:-94.7912,0,-141.651	0/0:61:60,1:60:2140:1:36:0,-14.7798,-188.729	0/1:274:106,168:106:3698:168:5957:-450.474,0,-249.674	0/0:137:137,0:137:4882:0:0:0,-41.2411,-438.7	0/0:93:93,0:93:3319:0:0:0,-27.9958,-297.92	0/0:98:98,0:98:3496:0:0:0,-29.5009,-312.937	0/0:179:178,1:178:6291:1:36:0,-50.4037,-561.009	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.1845	0/0:78:78,0:78:2755:0:0:0,-23.4803,-246.553	0/0:75:75,0:75:2663:0:0:0,-22.5772,-237.109	0/0:219:219,0:219:7783:0:0:0,-65.9256,-695.628	0/0:152:151,1:151:5388:1:36:0,-42.1735,-480.319	0/0:119:119,0:119:4217:0:0:0,-35.8226,-376.704	0/0:153:151,2:151:5337:2:72:0,-39.2209,-468.841	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.156	0/0:124:123,1:123:4375:1:36:0,-33.7412,-387.545	0/1:137:60,77:60:2144:77:2731:-204.445,0,-150.755	0/1:200:105,95:105:3752:95:3379:-243.57,0,-277.114	0/0:155:154,1:154:5466:1:36:0,-43.064,-486.109	0/0:129:129,0:129:4597:0:0:0,-38.8329,-412.878	0/0:225:225,0:225:7961:0:0:0,-67.7317,-713.584	0/1:341:165,175:165:5851:175:6164:-448.583,0,-421.816	0/0:79:77,2:77:2752:2:72:0,-16.9446,-237.8	0/1:144:72,72:72:2572:72:2504:-181.842,0,-186.352	0/1:147:72,74:72:2550:74:2647:-193.405,0,-182.78	0/1:108:57,51:57:2044:51:1820:-130.893,0,-151.304	0/1:219:112,107:112:4004:107:3819:-277.653,0,-292.549	0/1:304:100,204:100:3530:204:7242:-557.607,0,-224.844	0/0:133:133,0:133:4714:0:0:0,-40.037,-422.643	0/0:257:257,0:257:9139:0:0:0,-77.3647,-819.587
chr10	3638040	.	C	T	236745	PASS	AB=0.483599;ABP=19.1076;AC=134;AF=0.712766;AN=188;AO=8948;CIGAR=1X;DP=12530;DPB=12530;DPRA=27.2174;EPP=633.617;EPPR=38.5724;GTI=1;LEN=1;MEANALT=1.06522;MQM=52.8799;MQMR=54.6493;NS=94;NUMALT=1;ODDS=2.04054;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=319088;QR=127077;RO=3576;RPL=47;RPP=19027.3;RPPR=7629.84;RPR=8901;RUN=1;SAF=3715;SAP=562.216;SAR=5233;SRF=1683;SRP=29.7894;SRR=1893;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:14,35:14:500:35:1243:-97.1598,0,-30.3092	1/1:136:1,135:1:36:135:4823:-426.64,-37.3418,0	1/1:157:0,157:0:0:157:5586:-498.469,-47.2617,0	0/1:182:81,101:81:2881:101:3584:-266.949,0,-202.947	0/1:58:26,32:26:927:32:1142:-84.1402,0,-66.1434	0/1:82:47,35:47:1662:35:1233:-85.5947,0,-124.627	0/1:120:68,52:68:2411:52:1860:-129.544,0,-180.26	0/1:163:85,78:85:3031:78:2774:-199.116,0,-223.344	0/1:110:60,50:60:2138:50:1796:-128.229,0,-159.099	0/1:139:74,65:74:2636:65:2327:-165.986,0,-194.472	0/1:155:65,90:65:2302:90:3224:-243.052,0,-159.926	0/1:229:113,116:113:3975:116:4116:-299.155,0,-288.032	1/1:214:0,214:0:0:214:7667:-684.06,-64.4204,0	1/1:146:0,146:0:0:146:5213:-467.405,-43.9504,0	1/1:133:0,133:0:0:133:4738:-425.393,-40.037,0	1/1:149:0,149:0:0:149:5313:-476.334,-44.8535,0	1/1:216:0,216:0:0:216:7695:-684.303,-65.0225,0	1/1:185:0,185:0:0:185:6600:-586.736,-55.6906,0	0/1:122:64,58:64:2304:58:2053:-146.52,0,-170.362	0/1:167:81,86:81:2866:86:3051:-223.02,0,-207.367	0/1:215:135,80:135:4819:80:2818:-188.053,0,-368.31	0/1:41:27,14:27:964:14:485:-31.5821,0,-74.6365	1/1:100:1,99:1:36:99:3520:-312.237,-26.52,0	0/1:109:11,98:11:383:98:3485:-278.973,0,-1.93165	0/1:75:36,39:36:1272:39:1392:-102.242,0,-91.9161	1/1:278:0,278:0:0:278:9883:-886.035,-83.6863,0	0/1:309:177,132:177:6320:132:4721:-329.344,0,-474.271	0/1:90:48,42:48:1703:42:1495:-107.156,0,-126.181	0/1:210:107,103:107:3783:103:3652:-265.061,0,-277.044	0/1:112:53,59:53:1896:59:2102:-153.825,0,-136.496	1/1:200:0,200:0:0:200:7174:-641.938,-60.206,0	1/1:9:0,9:0:0:9:324:-29.2887,-2.70927,0	0/1:13:8,5:8:280:5:176:-12.2166,0,-21.5742	1/1:7:0,7:0:0:7:246:-22.2525,-2.10721,0	1/1:6:0,6:0:0:6:216:-19.7788,-1.80618,0	0/1:11:6,5:6:212:5:176:-12.8222,0,-16.1052	1/1:433:1,432:1:36:432:15437:-1382.27,-127.291,0	0/1:88:44,43:44:1563:43:1530:-109.71,0,-113.827	0/1:130:72,58:72:2543:58:2062:-144.84,0,-189.39	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:120:62,57:62:2207:57:2029:-145.89,0,-162.411	0/1:95:54,41:54:1915:41:1466:-102.856,0,-143.62	0/1:174:90,83:90:3173:83:2953:-212.416,0,-231.433	0/1:344:178,165:178:6331:165:5867:-422.45,0,-463.092	1/1:132:0,132:0:0:132:4657:-418.298,-39.736,0	0/1:93:60,33:60:2121:33:1180:-78.3374,0,-162.731	1/1:105:0,105:0:0:105:3710:-330.7,-31.6082,0	0/1:160:85,75:85:3022:75:2674:-192.032,0,-222.91	0/1:147:77,69:77:2752:69:2472:-177.029,0,-202.619	1/1:179:0,179:0:0:179:6358:-569.954,-53.8844,0	0/1:106:46,60:46:1635:60:2152:-161.341,0,-115.377	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7657	0/1:129:67,62:67:2396:62:2219:-159.176,0,-175.671	1/1:60:0,60:0:0:60:2148:-193.361,-18.0618,0	1/1:8:0,8:0:0:8:288:-25.9779,-2.40824,0	1/1:98:0,98:0:0:98:3492:-312.893,-29.5009,0	0/1:68:37,31:37:1311:31:1116:-80.0254,0,-97.5805	1/1:6:0,6:0:0:6:216:-19.2692,-1.80618,0	0/1:6:3,3:3:108:3:108:-8.24366,0,-8.2521	0/1:104:53,51:53:1876:51:1810:-131.142,0,-137.598	0/1:211:101,110:101:3560:110:3917:-288.25,0,-256.231	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2573	0/1:140:66,74:66:2351:74:2643:-195.46,0,-169.359	1/1:119:1,118:1:36:118:4179:-370.646,-32.2269,0	0/1:89:36,53:36:1276:53:1896:-143.428,0,-87.9421	1/1:62:1,61:1:36:61:2188:-192.964,-15.0808,0	0/1:276:167,109:167:5950:109:3896:-266.278,0,-449.826	1/1:137:0,137:0:0:137:4903:-440.517,-41.2411,0	1/1:96:1,95:1:36:95:3398:-301.3,-25.3006,0	1/1:102:0,102:0:0:102:3664:-327.699,-30.7051,0	1/1:181:0,181:0:0:181:6463:-579.679,-54.4864,0	1/1:25:0,25:0:0:25:892:-80.2699,-7.52575,0	1/1:82:0,82:0:0:82:2924:-261.109,-24.6845,0	1/1:77:0,77:0:0:77:2735:-243.545,-23.1793,0	1/1:228:0,228:0:0:228:8151:-727.941,-68.6348,0	1/1:156:1,155:1:36:155:5560:-495.663,-43.3776,0	1/1:117:0,117:0:0:117:4153:-370.952,-35.2205,0	1/1:163:2,161:2:72:161:5741:-504.914,-42.2312,0	0/1:11:2,9:2:72:9:324:-26.0574,0,-3.52539	1/1:129:1,128:1:36:128:4555:-403.432,-35.2464,0	0/1:138:75,63:75:2662:63:2232:-157.918,0,-197.942	0/1:207:95,111:95:3387:111:3970:-294.46,0,-242.105	1/1:157:0,157:0:0:157:5632:-504.08,-47.2617,0	1/1:130:1,129:1:27:129:4627:-412.569,-36.4341,0	1/1:230:1,229:1:36:229:8174:-728.674,-65.6386,0	0/1:346:181,165:181:6396:165:5890:-423.229,0,-467.899	1/1:82:2,80:2:72:80:2867:-248.176,-17.8477,0	0/1:149:74,75:74:2611:75:2673:-193.625,0,-189.923	0/1:148:73,75:73:2628:75:2656:-191.684,0,-190.974	0/1:110:50,60:50:1800:60:2142:-159.478,0,-128.369	0/1:222:109,113:109:3875:113:4032:-294.034,0,-281.785	0/1:315:207,108:207:7364:108:3876:-252.434,0,-565.272	1/1:137:0,137:0:0:137:4858:-435.743,-41.2411,0	1/1:263:0,263:0:0:263:9394:-842.142,-79.1709,0
chr10	3638067	.	TCCT	CCCT,ACCT	329795	PASS	AB=0.487867,0.504838;ABP=11.5995,4.37616;AC=134,54;AF=0.712766,0.287234;AN=188;AO=8829,3413;CIGAR=1X3M,1X3M;DP=12323;DPB=12329.5;DPRA=29.744,0.961283;EPP=484.379,61.4225;EPPR=5.18177;GTI=1;LEN=1,1;MEANALT=2.28261,2.58065;MQM=52.8952,54.3809;MQMR=56.5;NS=94;NUMALT=2;ODDS=2.32447;PAIRED=0,0;PAIREDR=0;PAO=10.5,4;PQA=221.5,144;PQR=0;PRO=0;QA=311034,120517;QR=538;RO=16;RPL=8741,3364;RPP=18418.2,6994.75;RPPR=37.7539;RPR=88,49;RUN=1,1;SAF=3627,1506;SAP=613.114,105.318;SAR=5202,1907;SRF=6;SRP=5.18177;SRR=10;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:47:0,33,14:0:0:33,14:1146,480:-132.115,-39.2186,-29.2846,-93.2392,0,-89.0248	1/1:136:0,135,1:0:0:135,1:4760,32:-424.431,-40.6391,0,-421.853,-37.7408,-421.552	1/1:156:0,155,0:0:0:155,0:5425,0:-484.691,-46.6597,0,-484.691,-46.6597,-484.691	1/2:174:0,97,76:0:0:97,76:3386,2711:-494.717,-220.432,-191.232,-274.415,0,-251.536	1/2:56:0,32,24:0:0:32,24:1137,847:-161.049,-69.1861,-59.5531,-92.2153,0,-84.9906	1/2:83:0,36,46:0:0:36,46:1283,1624:-235.199,-131.667,-120.83,-103.525,0,-89.6778	1/2:114:0,45,62:0:0:45,62:1572,2211:-306.621,-179.388,-165.842,-127.253,0,-108.589	1/2:160:0,78,82:0:0:78,82:2784,2911:-462.12,-236.943,-213.462,-225.532,0,-200.847	1/2:108:0,49,59:0:0:49,59:1700,2063:-305.326,-167.682,-152.932,-137.932,0,-120.171	1/2:139:0,65,72:0:0:65,72:2284,2523:-389.177,-204.494,-184.927,-184.812,0,-163.138	1/2:149:0,88,60:0:0:88,60:3066,2104:-418.392,-169.954,-143.464,-248.427,0,-230.365	1/2:220:0,111,107:0:0:111,107:3880,3768:-619.689,-306.087,-272.673,-313.675,0,-281.465	1/1:213:0,212,0:0:0:212,0:7455,0:-665.495,-63.8184,0,-665.495,-63.8184,-665.495	1/1:143:0,143,0:0:0:143,0:5060,0:-453.522,-43.0473,0,-453.522,-43.0473,-453.522	1/1:133:0,132,1:0:0:132,1:4621,36:-414.396,-39.736,0,-411.458,-36.4387,-411.157	1/1:145:0,145,0:0:0:145,0:5021,0:-450.236,-43.6494,0,-450.236,-43.6494,-450.236	1/1:215:0,214,1:0:0:214,1:7587,36:-675.099,-64.4204,0,-672.197,-61.1628,-671.896	1/1:182:0,182,0:0:0:182,0:6444,0:-573.36,-54.7875,0,-573.36,-54.7875,-573.36	1/2:122:0,57,64:0:0:57,64:2035,2274:-348.93,-184.715,-167.556,-164.239,0,-144.973	1/2:164:0,87,76:0:0:87,76:3057,2688:-466.089,-218.401,-192.211,-247.705,0,-224.826	1/2:207:0,79,127:0:0:79,127:2786,4511:-592.284,-366.705,-342.923,-225.65,0,-187.419	1/2:39:0,12,27:0:0:12,27:432,950:-112.728,-77.5178,-73.9055,-35.5668,0,-27.439	1/1:100:0,99,1:0:0:99,1:3506,36:-314.292,-29.802,0,-311.369,-26.52,-311.067	1/2:108:0,98,10:0:0:98,10:3483,360:-311.442,-29.6205,-0.119536,-282.126,0,-279.115	1/2:69:0,37,32:0:0:37,32:1319,1119:-197.812,-91.016,-79.8779,-107.089,0,-97.4562	1/1:269:0,268,0:0:0:268,0:9536,0:-854.982,-80.676,0,-854.982,-80.676,-854.982	1/2:301:0,134,166:0:0:134,166:4716,5887:-859.18,-478.01,-437.672,-381.162,0,-331.191	1/2:87:0,42,45:0:0:42,45:1487,1599:-250.864,-130.349,-117.705,-120.869,0,-107.323	1/2:207:1,106,100:1:36:106,100:3736,3516:-586.262,-282.848,-253.877,-300.769,0,-273.603	1/2:107:0,55,50:0:0:55,50:1946,1784:-302.1,-144.874,-128.317,-157.249,0,-142.198	1/1:194:2,190,0:2:72:190,0:6714,0:-594.876,-51.2809,0,-595.478,-57.1957,-601.353	1/1:9:0,9,0:0:0:9,0:324,0:-29.2887,-2.70927,0,-29.2887,-2.70927,-29.2887	1/2:12:0,4,8:0:0:4,8:140,288:-35.137,-23.7946,-22.5905,-11.6945,0,-9.28626	1/1:7:0,7,0:0:0:7,0:252,0:-22.7483,-2.10721,0,-22.7483,-2.10721,-22.7483	1/1:6:0,5,0:0:0:5,0:156,0:-14.0864,-1.50515,0,-14.0864,-1.50515,-14.0864	1/2:9:0,4,5:0:0:4,5:140,176:-26.0252,-14.6715,-13.4674,-11.7038,0,-10.1986	1/1:438:0,435,0:0:0:435,0:15317,0:-1374.03,-130.948,0,-1374.03,-130.948,-1374.03	1/2:84:0,42,41:0:0:42,41:1491,1460:-238.689,-118.502,-105.859,-120.261,0,-107.919	1/2:124:0,57,67:0:0:57,67:1974,2359:-350.2,-191.306,-174.147,-158.881,0,-138.712	1/2:3:0,1,2:0:0:1,2:36,68:-8.79971,-5.85565,-5.55462,-3.29724,0,-2.69518	1/2:118:0,56,62:0:0:56,62:1971,2183:-337.083,-177.47,-160.613,-159.963,0,-141.299	1/2:97:1,41,55:1:24:41,55:1463,1943:-274.08,-155.877,-145.392,-116.758,0,-102.058	1/2:166:1,83,82:1:24:83,82:2931,2891:-469.092,-232.002,-208.855,-235.664,0,-212.818	1/2:342:0,165,176:0:0:165,176:5841,6246:-978.891,-505.499,-455.829,-473.405,0,-420.424	1/1:128:0,128,0:0:0:128,0:4476,0:-401.878,-38.5318,0,-401.878,-38.5318,-401.878	1/2:91:0,35,56:0:0:35,56:1260,1971:-262.866,-160.233,-149.696,-102.99,0,-86.1321	1/1:103:0,101,0:0:0:101,0:3570,0:-318.929,-30.404,0,-318.929,-30.404,-318.929	1/2:158:0,74,84:0:0:74,84:2621,2949:-452.215,-239.387,-217.111,-213.179,0,-187.893	1/2:144:0,66,78:0:0:66,78:2367,2779:-417.225,-225.548,-205.68,-192.032,0,-168.552	1/1:179:0,178,0:0:0:178,0:6345,0:-568.468,-53.5833,0,-568.468,-53.5833,-568.468	1/2:105:0,61,43:0:0:61,43:2149,1510:-297.216,-122.865,-104.502,-174.468,0,-161.524	2/2:5:0,0,5:0:0:0,5:0,180:-16.5272,-16.5272,-16.5272,-1.50515,-1.50515,0	1/2:121:0,59,61:0:0:59,61:2032,2149:-338.262,-174.511,-156.75,-163.785,0,-145.422	1/1:60:0,60,0:0:0:60,0:2125,0:-191.291,-18.0618,0,-191.291,-18.0618,-191.291	1/1:9:0,9,0:0:0:9,0:324,0:-29.1807,-2.70927,0,-29.1807,-2.70927,-29.1807	1/1:104:0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chr10	3765849	.	TT	CC,TC	249213	PASS	AB=0.516027,0.480667;ABP=18.5321,25.5962;AC=140,48;AF=0.744681,0.255319;AN=188;AO=8863,3367;CIGAR=2X,1M1X;DP=12274;DPB=12274;DPRA=0,1.57509;EPP=19248.8,7314.36;EPPR=5.18177;GTI=1;LEN=2,1;MEANALT=2.02128,2.38983;MQM=59.504,59.9376;MQMR=60;NS=94;NUMALT=2;ODDS=1.11256;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=305931,118378;QR=36;RO=1;RPL=8863,3367;RPP=19248.8,7314.36;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=8863,3367;SAP=19248.8,7314.36;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:70:0,40,28:0:0:40,28:1326,970:-186.121,-78.8805,-66.8393,-107.282,0,-98.8529	1/1:175:0,173,1:0:0:173,1:6002,36:-539.45,-52.0782,0,-536.513,-49.1408,-536.212	1/1:195:0,194,0:0:0:194,0:6665,0:-599.339,-58.3998,0,-599.339,-58.3998,-599.339	1/2:356:0,180,175:0:0:180,175:6197,6118:-1000.93,-497.799,-443.614,-503.249,0,-450.569	1/2:186:0,95,91:0:0:95,91:3291,3191:-527.44,-260.021,-231.423,-267.767,0,-240.373	1/2:120:0,69,51:0:0:69,51:2345,1791:-336.251,-146.116,-125.345,-190.481,0,-175.128	1/2:156:0,73,83:0:0:73,83:2505,2883:-438.056,-234.709,-212.734,-203.691,0,-178.706	1/2:212:0,99,113:0:0:99,113:3356,3976:-595.855,-324.015,-294.213,-272.185,0,-238.168	1/2:139:0,70,69:0:0:70,69:2432,2401:-393.244,-195.574,-174.502,-198.018,0,-177.247	1/2:126:0,69,57:0:0:69,57:2356,2032:-356.878,-165.924,-145.153,-191.303,0,-174.144	1/2:10:0,7,3:0:0:7,3:241,108:-28.7356,-9.17208,-7.06487,-19.9186,0,-19.0156	1/2:39:0,24,15:0:0:24,15:820,528:-109.862,-43.3359,-36.1112,-66.8743,0,-62.3588	1/1:40:0,40,0:0:0:40,0:1349,0:-121.683,-12.0412,0,-121.683,-12.0412,-121.683	1/1:21:0,21,0:0:0:21,0:720,0:-65.1139,-6.32163,0,-65.1139,-6.32163,-65.1139	1/1:33:0,33,0:0:0:33,0:1135,0:-102.453,-9.93399,0,-102.453,-9.93399,-102.453	1/1:34:0,34,0:0:0:34,0:1159,0:-104.593,-10.235,0,-104.593,-10.235,-104.593	1/1:26:0,26,0:0:0:26,0:893,0:-80.6692,-7.82678,0,-80.6692,-7.82678,-80.6692	1/1:37:0,36,0:0:0:36,0:1241,0:-111.733,-10.8371,0,-111.733,-10.8371,-111.733	1/2:8:0,6,2:0:0:6,2:214,72:-23.6772,-6.23466,-4.42848,-17.8016,0,-17.1995	1/2:382:0,194,187:0:0:194,187:6750,6570:-1083.45,-534.736,-476.337,-548.707,0,-492.414	1/2:156:0,84,72:0:0:84,72:2891,2505:-438.784,-204.025,-178.738,-235.105,0,-213.431	1/2:276:0,96,180:0:0:96,180:3313,6334:-785.101,-515.974,-487.075,-269.474,0,-215.289	1/1:185:0,183,2:0:0:183,2:6328,72:-569.092,-55.0885,0,-563.217,-48.8538,-562.615	1/1:232:0,225,7:0:0:225,7:7766,248:-698.297,-67.7318,0,-678.094,-47.1748,-675.987	1/2:137:0,72,65:0:0:72,65:2430,2277:-382.56,-185.622,-163.948,-197.282,0,-177.715	1/1:572:0,570,0:0:0:570,0:19705,0:-1772.57,-171.587,0,-1772.57,-171.587,-1772.57	1/2:304:0,160,142:0:0:160,142:5525,4940:-850.399,-401.609,-353.444,-448.777,0,-406.03	1/2:8:0,7,1:0:0:7,1:240,36:-22.7667,-3.29724,-1.19003,-19.8271,0,-19.5261	1/2:412:0,224,188:0:0:224,188:7791,6607:-1171.43,-538.123,-470.693,-633.656,0,-577.062	1/2:191:0,96,95:0:0:96,95:3334,3392:-547.8,-276.898,-247.999,-271.254,0,-242.656	1/1:199:0,198,0:0:0:198,0:6798,0:-611.608,-59.6039,0,-611.608,-59.6039,-611.608	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:13:0,12,1:0:0:12,1:426,36:-38.3183,-3.61236,0,-35.3805,-0.315115,-35.0794	1/1:1:0,1,0:0:0:1,0:34,0:-3.39891,-0.30103,0,-3.39891,-0.30103,-3.39891	1/1:5:0,5,0:0:0:5,0:161,0:-14.8064,-1.50515,0,-14.8064,-1.50515,-14.8064	1/2:15:0,10,5:0:0:10,5:343,180:-42.8824,-15.0469,-12.0366,-28.1897,0,-26.6845	1/1:109:0,109,0:0:0:109,0:3727,0:-335.601,-32.8123,0,-335.601,-32.8123,-335.601	1/2:289:0,132,156:0:0:132,156:4630,5494:-824.039,-447.299,-407.563,-376.774,0,-329.813	1/2:21:0,10,11:0:0:10,11:350,373:-59.0661,-30.5839,-27.5736,-28.8269,0,-25.5156	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:222:0,118,104:0:0:118,104:4056,3682:-629.456,-300.268,-264.746,-329.537,0,-298.23	1/2:17:0,8,9:0:0:8,9:284,320:-49.5731,-26.4331,-24.0248,-23.4951,0,-20.7858	1/2:275:0,153,119:0:0:153,119:5303,4176:-770.819,-339.93,-293.873,-430.964,0,-395.142	1/2:30:0,17,13:0:0:17,13:589,456:-85.3105,-37.4598,-32.3423,-48.1994,0,-44.286	1/1:45:0,45,0:0:0:45,0:1480,0:-133.457,-13.5464,0,-133.457,-13.5464,-133.457	1/2:161:1,89,70:1:36:89,70:3142,2474:-454.14,-198.608,-174.754,-252.951,0,-234.817	1/1:251:0,248,3:0:0:248,3:8597,108:-773.205,-74.6554,0,-764.393,-65.4834,-763.49	1/2:281:0,161,120:0:0:161,120:5563,4230:-796.475,-344.757,-296.291,-452.068,0,-415.944	1/2:184:0,93,91:0:0:93,91:3186,3211:-520.438,-261.819,-233.824,-258.966,0,-231.572	1/1:164:0,164,0:0:0:164,0:5703,0:-513.377,-49.3689,0,-513.377,-49.3689,-513.377	1/2:309:0,156,151:0:0:156,151:5418,5338:-875.184,-434.803,-387.842,-440.436,0,-394.98	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/2:186:0,99,87:0:0:99,87:3438,3097:-532.071,-252.745,-222.943,-279.678,0,-253.488	1/1:56:0,55,0:0:0:55,0:1922,0:-172.674,-16.5567,0,-172.674,-16.5567,-172.674	1/1:25:0,24,0:0:0:24,0:842,0:-75.6931,-7.22472,0,-75.6931,-7.22472,-75.6931	1/1:216:0,214,0:0:0:214,0:7406,0:-666.3,-64.4204,0,-666.3,-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chr10	3765925	.	ATC	CTT,ATT	207816	PASS	AB=0.509568,0.488838;ABP=7.49791,9.11843;AC=138,50;AF=0.734043,0.265957;AN=188;AO=7132,2772;CIGAR=1X1M1X,2M1X;DP=9921;DPB=9921.33;DPRA=0,1.40226;EPP=15490,6022.33;EPPR=5.18177;GTI=1;LEN=3,1;MEANALT=1.76596,2.13793;MQM=54.1828,59.4322;MQMR=60;NS=94;NUMALT=2;ODDS=0.715728;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=0;QA=251661,99159;QR=36;RO=1;RPL=0,0;RPP=15490,6022.33;RPPR=5.18177;RPR=7132,2772;RUN=1,1;SAF=0,0;SAP=15490,6022.33;SAR=7132,2772;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,13,11:0:0:13,11:454,392:-69.0457,-32.3087,-28.3953,-37.0892,0,-33.7778	1/1:119:0,119,0:0:0:119,0:4192,0:-375.047,-35.8226,0,-375.047,-35.8226,-375.047	1/1:151:0,151,0:0:0:151,0:5341,0:-479.383,-45.4555,0,-479.383,-45.4555,-479.383	1/2:225:0,123,101:0:0:123,101:4364,3571:-645.503,-290.776,-253.749,-354.721,0,-324.317	1/2:93:0,40,53:0:0:40,53:1406,1896:-269.229,-154.963,-142.921,-114.62,0,-98.6654	1/2:71:0,29,42:0:0:29,42:1038,1504:-207.397,-122.983,-114.253,-84.771,0,-72.1277	1/2:121:0,65,56:0:0:65,56:2306,2000:-351.001,-163.416,-143.849,-187.94,0,-171.083	1/2:201:0,105,96:0:0:105,96:3716,3436:-581.315,-280.149,-248.541,-301.52,0,-272.621	1/2:106:0,49,57:0:0:49,57:1740,2032:-304.126,-165.279,-150.529,-139.198,0,-122.039	1/2:64:0,36,27:0:0:36,27:1260,967:-181.283,-78.952,-68.1149,-102.431,0,-94.3029	1/2:40:0,14,26:0:0:14,26:488,932:-116.011,-76.3568,-72.1424,-40.0059,0,-32.1791	1/2:44:0,22,22:0:0:22,22:782,788:-128.176,-64.6221,-57.9995,-63.9102,0,-57.2875	1/1:48:0,48,0:0:0:48,0:1706,0:-152.92,-14.4494,0,-152.92,-14.4494,-152.92	1/1:72:0,72,0:0:0:72,0:2573,0:-231.126,-21.6742,0,-231.126,-21.6742,-231.126	1/1:54:0,54,0:0:0:54,0:1867,0:-168.106,-16.2556,0,-168.106,-16.2556,-168.106	1/1:41:0,41,0:0:0:41,0:1453,0:-129.826,-12.3422,0,-129.826,-12.3422,-129.826	1/1:43:0,43,0:0:0:43,0:1518,0:-136.349,-12.9443,0,-136.349,-12.9443,-136.349	1/1:36:0,36,0:0:0:36,0:1239,0:-111.145,-10.8371,0,-111.145,-10.8371,-111.145	1/2:14:0,8,6:0:0:8,6:288,216:-41.2328,-17.982,-15.5737,-23.6091,0,-21.803	1/2:242:0,131,111:0:0:131,111:4642,3973:-701.897,-324.333,-284.898,-377.92,0,-344.505	1/2:131:0,76,55:0:0:76,55:2684,1959:-377.484,-159.922,-137.044,-217.916,0,-201.359	1/2:165:0,59,106:0:0:59,106:2075,3808:-479.555,-310.871,-293.11,-169.038,0,-137.129	1/1:108:0,106,1:0:0:106,1:3715,36:-333.14,-31.9092,0,-330.203,-28.967,-329.902	1/2:149:0,135,14:0:0:135,14:4756,500:-426.631,-41.0151,-0.376044,-385.972,0,-381.758	1/2:98:1,48,49:1:36:48,49:1709,1756:-278.598,-139.926,-128.414,-136.033,0,-124.22	1/1:505:0,502,0:0:0:502,0:17680,0:-1588.27,-151.117,0,-1588.27,-151.117,-1588.27	1/2:226:0,110,116:0:0:110,116:3881,4149:-653.673,-338.315,-305.202,-315.712,0,-280.792	1/2:14:0,5,9:0:0:5,9:175,324:-40.8854,-26.7966,-25.2914,-14.4401,0,-11.7309	1/2:382:0,210,172:0:0:210,172:7425,6169:-1106.71,-503.197,-439.981,-603.873,0,-552.096	1/2:174:0,74,100:0:0:74,100:2592,3558:-499.74,-290.11,-267.833,-209.982,0,-179.879	1/1:126:0,126,0:0:0:126,0:4461,0:-400.911,-37.9298,0,-400.911,-37.9298,-400.911	1/1:6:0,6,0:0:0:6,0:214,0:-19.4543,-1.80618,0,-19.4543,-1.80618,-19.4543	1/2:20:0,12,8:0:0:12,8:430,288:-58.8564,-23.8414,-20.229,-35.3738,0,-32.9656	1/1:6:0,6,0:0:0:6,0:212,0:-19.2948,-1.80618,0,-19.2948,-1.80618,-19.2948	1/1:3:0,3,0:0:0:3,0:106,0:-9.86686,-0.90309,0,-9.86686,-0.90309,-9.86686	1/2:4:0,3,1:0:0:3,1:108,36:-12.0844,-3.29724,-2.39415,-9.14675,0,-8.84572	1/1:154:0,154,0:0:0:154,0:5441,0:-489.134,-46.3586,0,-489.134,-46.3586,-489.134	1/2:231:0,99,132:0:0:99,132:3465,4724:-666.522,-385.379,-355.577,-281.495,0,-241.759	1/2:27:0,11,16:0:0:11,16:390,576:-78.9992,-47.3123,-44.001,-32.0428,0,-27.2263	1/2:11:0,9,2:0:0:9,2:319,72:-32.1572,-6.23466,-3.52539,-26.2812,0,-25.6792	1/2:170:0,86,84:0:0:86,84:3053,2997:-492.423,-244.617,-218.729,-248.161,0,-222.874	1/2:24:0,3,21:0:0:3,21:108,752:-70.1997,-61.667,-60.7639,-8.88326,0,-2.56163	1/2:109:0,60,49:0:0:60,49:2125,1752:-315.262,-143.079,-125.017,-172.538,0,-157.787	1/2:50:0,31,19:0:0:31,19:1114,680:-146.529,-55.8053,-46.4734,-91.0816,0,-85.3621	1/1:44:0,44,0:0:0:44,0:1531,0:-137.877,-13.2453,0,-137.877,-13.2453,-137.877	1/2:142:0,72,70:0:0:72,70:2526,2498:-409.328,-203.964,-182.29,-205.718,0,-184.645	1/1:163:0,163,0:0:0:163,0:5774,0:-517.927,-49.0679,0,-517.927,-49.0679,-517.927	1/2:231:0,111,120:0:0:111,120:3868,4293:-664.431,-350.349,-316.935,-314.434,0,-278.31	1/2:146:0,69,76:0:0:69,76:2420,2736:-419.803,-223.322,-202.551,-196.584,0,-173.706	1/1:153:0,151,2:0:0:151,2:5381,72:-483.309,-45.4555,0,-477.434,-39.2209,-476.832	1/2:218:0,116,101:0:0:116,101:4087,3636:-628.862,-296.67,-261.75,-332.212,0,-301.808	1/2:15:0,11,4:0:0:11,4:384,144:-43.3134,-12.1095,-8.79817,-31.5608,0,-30.3566	1/2:168:0,84,84:0:0:84,84:2971,3016:-487.23,-246.327,-221.041,-241.259,0,-215.972	1/1:78:0,77,0:0:0:77,0:2733,0:-245.724,-23.1793,0,-245.724,-23.1793,-245.724	1/1:14:0,14,0:0:0:14,0:502,0:-44.7008,-4.21442,0,-44.7008,-4.21442,-44.7008	1/1:117:0,117,0:0:0:117,0:4117,0:-369.693,-35.2205,0,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chr10	3864271	.	T	A	48009.5	PASS	AB=0.50587;ABP=4.71833;AC=50;AF=0.265957;AN=188;AO=2891;CIGAR=1X;DP=10292;DPB=10292;DPRA=1.17717;EPP=6280.74;EPPR=16071.9;GTI=2;LEN=1;MEANALT=1;MQM=59.7011;MQMR=59.5222;NS=94;NUMALT=1;ODDS=0.810164;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102245;QR=264977;RO=7400;RPL=0;RPP=6280.74;RPPR=16071.9;RPR=2891;RUN=1;SAF=0;SAP=6280.74;SAR=2891;SRF=0;SRP=16071.9;SRR=7400;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:29,26:29:1036:26:913:-65.9192,0,-76.9796	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.643	0/0:152:152,0:152:5444:0:0:0,-45.7566,-489.873	0/1:291:146,145:146:5236:145:5172:-377.999,0,-383.64	0/1:62:26,36:26:936:36:1283:-97.1088,0,-65.8652	0/1:60:30,30:30:1037:30:1059:-77.5505,0,-75.4849	0/1:98:50,48:50:1800:48:1719:-125.494,0,-131.668	0/1:105:52,53:52:1864:53:1863:-136.065,0,-136.406	0/1:98:55,43:55:1976:43:1532:-108.657,0,-148.42	0/1:72:12,60:12:432:60:2148:-171.906,0,-17.5447	0/1:113:49,64:49:1756:64:2234:-167.281,0,-124.301	0/1:131:54,77:54:1926:77:2706:-204.209,0,-134.148	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.4	0/0:115:115,0:115:4099:0:0:0,-34.6184,-368.948	0/0:94:94,0:94:3384:0:0:0,-28.2968,-303.894	0/0:96:96,0:96:3431:0:0:0,-28.8989,-308.915	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.556	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.835	0/1:48:26,22:26:936:22:788:-56.7708,0,-70.11	0/1:182:86,96:86:3084:96:3432:-254.304,0,-222.978	0/1:200:98,102:98:3516:102:3585:-262.643,0,-256.382	0/0:97:97,0:97:3465:0:0:0,-29.1999,-311.998	0/0:132:132,0:132:4744:0:0:0,-39.736,-427.102	0/1:54:49,5:49:1764:5:180:-0.296445,0,-142.779	0/1:108:59,49:59:2096:49:1720:-122.562,0,-156.351	0/0:308:308,0:308:11012:0:0:0,-92.7172,-989.734	0/1:244:119,125:119:4256:125:4370:-319.977,0,-309.734	0/1:38:14,24:14:500:24:844:-64.6464,0,-33.897	0/1:263:145,118:145:5167:118:4145:-294.028,0,-385.993	0/1:138:64,74:64:2296:74:2635:-195.848,0,-165.348	0/0:146:146,0:146:5231:0:0:0,-43.9504,-470.153	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4463	0/1:24:9,15:9:324:15:540:-41.7072,0,-22.2811	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3128	0/1:37:17,20:17:612:20:712:-53.2604,0,-44.2662	0/0:261:261,0:261:9368:0:0:0,-78.5688,-841.807	0/1:92:51,41:51:1836:41:1457:-103.729,0,-137.816	0/1:87:52,35:52:1860:35:1221:-84.0016,0,-141.473	0/1:19:8,11:8:284:11:388:-29.5313,0,-20.1838	0/1:105:48,57:48:1716:57:2000:-148.653,0,-123.103	0/1:55:35,20:35:1256:20:720:-48.5721,0,-96.7794	0/1:312:170,142:170:6076:142:5032:-359.053,0,-452.877	0/1:80:43,37:43:1548:37:1319:-94.9241,0,-115.526	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.058	0/1:197:94,103:94:3365:103:3652:-269.581,0,-243.759	0/0:107:107,0:107:3844:0:0:0,-32.2102,-345.911	0/1:182:86,96:86:3073:96:3385:-250.073,0,-221.983	0/1:103:55,48:55:1968:48:1684:-120.809,0,-146.298	0/0:136:136,0:136:4892:0:0:0,-40.9401,-440.418	0/1:43:25,18:25:888:18:644:-45.3463,0,-67.2916	0/1:26:14,12:14:500:12:421:-30.3962,0,-37.3421	0/1:128:62,66:62:2215:66:2359:-174.019,0,-161.043	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.327	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4432	0/0:133:133,0:133:4751:0:0:0,-40.037,-427.456	0/1:63:27,36:27:968:36:1280:-96.5383,0,-68.4715	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9767	0/1:110:49,61:49:1748:61:2149:-160.506,0,-124.42	0/1:109:53,56:53:1896:56:1964:-144.217,0,-138.099	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.0526	0/1:180:86,94:86:3072:94:3332:-245.908,0,-222.405	0/0:250:249,1:249:8940:1:36:0,-71.6592,-800.949	0/1:101:52,49:52:1868:49:1713:-124.049,0,-137.195	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.008	0/1:195:99,96:99:3548:96:3419:-247.948,0,-259.729	0/0:184:184,0:184:6562:0:0:0,-55.3895,-589.231	0/0:87:87,0:87:3119:0:0:0,-26.1896,-280.926	0/0:53:52,0:52:1872:0:0:0,-15.6536,-168.327	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.931	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.418	0/0:155:155,0:155:5517:0:0:0,-46.6596,-496.596	0/0:110:109,1:109:3904:1:36:0,-29.515,-347.536	0/0:219:218,1:218:7794:1:36:0,-62.3273,-696.914	0/0:130:130,0:130:4663:0:0:0,-39.1339,-419.815	0/0:127:127,0:127:4530:0:0:0,-38.2308,-407.635	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.301	0/0:31:30,1:30:1080:1:36:0,-5.73365,-93.7131	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.607	0/1:124:54,70:54:1940:70:2482:-185.18,0,-137.524	0/1:187:99,88:99:3548:88:3109:-223.733,0,-263.225	0/0:89:89,0:89:3183:0:0:0,-26.7917,-285.758	0/0:105:105,0:105:3760:0:0:0,-31.6081,-337.961	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.16	0/1:179:90,89:90:3228:89:3136:-228.58,0,-236.834	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6217	0/1:68:24,44:24:864:44:1554:-119.669,0,-57.5938	0/1:87:42,45:42:1504:45:1583:-116.559,0,-108.51	0/1:99:46,53:46:1635:53:1864:-138.221,0,-117.614	0/1:221:110,111:110:3952:111:3932:-287.448,0,-289.324	0/1:101:35,66:35:1243:66:2326:-179.174,0,-81.7555	0/0:197:197,0:197:7048:0:0:0,-59.3029,-634.061	0/0:144:144,0:144:5155:0:0:0,-43.3483,-462.994
chr10	3864291	.	ATAG	GTAC,ATAC	217281	PASS	AB=0.495561,0.502176;ABP=3.99342,3.24653;AC=138,50;AF=0.734043,0.265957;AN=188;AO=7458,2897;CIGAR=1X2M1X,3M1X;DP=10392;DPB=10392;DPRA=0,1.30532;EPP=16189.2,6293.77;EPPR=5.18177;GTI=2;LEN=4,1;MEANALT=1.94681,2.25862;MQM=59.5003,59.7314;MQMR=60;NS=94;NUMALT=2;ODDS=0.330782;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=262194,103360;QR=36;RO=1;RPL=1,0;RPP=16189.2,6293.77;RPPR=5.18177;RPR=7457,2897;RUN=1,1;SAF=0,0;SAP=16197.9,6293.77;SAR=7458,2897;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:55:0,31,24:0:0:31,24:1089,856:-158.656,-70.1282,-60.7963,-88.8814,0,-81.6567	1/1:70:0,70,0:0:0:70,0:2468,0:-222.294,-21.0721,0,-222.294,-21.0721,-222.294	1/1:159:0,159,0:0:0:159,0:5591,0:-503.025,-47.8638,0,-503.025,-47.8638,-503.025	1/2:289:0,148,141:0:0:148,141:5203,5031:-833.858,-410.481,-365.929,-423.731,0,-381.286	1/2:63:0,25,37:0:0:25,37:893,1328:-181.191,-108.393,-100.867,-72.8631,0,-61.725	1/2:60:0,31,29:0:0:31,29:1067,1036:-171.36,-84.8159,-75.4839,-86.8944,0,-78.1646	1/2:99:0,50,48:0:0:50,48:1768,1724:-284.763,-140.774,-125.723,-144.122,0,-129.672	1/2:107:0,52,55:0:0:52,55:1825,1934:-306.242,-157.739,-142.086,-148.854,0,-132.297	1/2:97:0,56,41:0:0:56,41:1979,1459:-280.415,-119.247,-102.389,-161.523,0,-149.181	1/2:71:0,12,59:0:0:12,59:420,2103:-205.943,-171.773,-168.161,-34.5206,0,-16.7598	1/2:112:0,49,63:0:0:49,63:1701,2236:-320.753,-182.487,-167.737,-138.616,0,-119.651	1/2:134:0,55,79:0:0:55,79:1943,2815:-387.873,-229.674,-213.118,-158.553,0,-134.771	1/1:120:0,118,0:0:0:118,0:4171,0:-375.208,-35.5215,0,-375.208,-35.5215,-375.208	1/1:117:0,117,0:0:0:117,0:4132,0:-371.997,-35.2205,0,-371.997,-35.2205,-371.997	1/1:95:0,94,0:0:0:94,0:3338,0:-299.854,-28.2968,0,-299.854,-28.2968,-299.854	1/1:98:0,97,0:0:0:97,0:3391,0:-305.074,-29.1999,0,-305.074,-29.1999,-305.074	1/1:37:0,37,0:0:0:37,0:1317,0:-118.797,-11.1381,0,-118.797,-11.1381,-118.797	1/1:45:0,45,0:0:0:45,0:1594,0:-143.733,-13.5464,0,-143.733,-13.5464,-143.733	1/2:48:0,27,21:0:0:27,21:942,752:-138.263,-61.6601,-53.5323,-76.9571,0,-70.6355	1/2:186:0,86,100:0:0:86,100:3062,3588:-542.563,-293.021,-267.132,-249.899,0,-219.796	1/2:205:0,100,105:0:0:100,105:3525,3747:-592.789,-305.813,-275.71,-287.331,0,-255.722	1/1:97:0,95,0:0:0:95,0:3356,0:-301.894,-28.5979,0,-301.894,-28.5979,-301.894	1/1:134:0,133,1:0:0:133,1:4654,36:-418.589,-40.037,0,-415.651,-36.7397,-415.35	1/2:55:0,49,6:0:0:49,6:1736,193:-157.318,-15.8794,-1.12896,-141.764,0,-139.958	1/2:108:0,59,49:0:0:59,49:2068,1756:-311.782,-143.524,-125.763,-168.612,0,-153.862	1/1:315:0,311,0:0:0:311,0:10919,0:-981.58,-93.6203,0,-981.58,-93.6203,-981.58	1/2:249:0,120,129:0:0:120,129:4219,4605:-719.123,-375.731,-339.607,-343.746,0,-304.913	1/2:39:0,15,24:0:0:15,24:529,841:-111.584,-68.5095,-63.994,-43.4262,0,-36.2015	1/2:269:0,150,119:0:0:150,119:5267,4263:-776.575,-347.918,-302.764,-429.012,0,-393.189	1/2:142:0,65,76:0:0:65,76:2290,2719:-407.957,-221.714,-202.147,-186.238,0,-163.36	1/1:146:0,145,0:0:0:145,0:5074,0:-456.029,-43.6494,0,-456.029,-43.6494,-456.029	1/1:16:0,16,0:0:0:16,0:558,0:-50.5414,-4.81648,0,-50.5414,-4.81648,-50.5414	1/2:24:0,9,15:0:0:9,15:315,540:-70.0417,-44.4165,-41.7072,-25.9788,0,-21.4633	1/1:2:0,2,0:0:0:2,0:71,0:-6.74206,-0.60206,0,-6.74206,-0.60206,-6.74206	1/1:25:0,25,0:0:0:25,0:896,0:-80.9525,-7.52575,0,-80.9525,-7.52575,-80.9525	1/2:37:0,17,20:0:0:17,20:595,720:-107.497,-59.1,-53.9825,-48.7511,0,-42.7305	1/1:261:0,258,1:0:0:258,1:9078,36:-816.331,-77.6657,0,-813.394,-74.71,-813.093	1/2:96:0,53,43:0:0:53,43:1885,1516:-277.161,-123.778,-107.823,-153.737,0,-140.792	1/2:88:0,53,35:0:0:53,35:1860,1237:-252.45,-101.096,-85.1417,-151.706,0,-141.17	1/2:20:0,9,11:0:0:9,11:323,396:-59.0088,-32.6621,-29.9529,-26.7058,0,-23.3945	1/2:105:0,46,59:0:0:46,59:1634,2120:-306.429,-173.299,-159.451,-133.487,0,-115.727	1/2:55:0,35,20:0:0:35,20:1252,720:-161.189,-59.1082,-48.5721,-102.44,0,-96.4195	1/2:320:0,176,144:0:0:176,144:6089,5157:-915.301,-420.83,-367.849,-494.824,0,-451.476	1/2:82:0,43,39:0:0:43,39:1503,1396:-236.455,-114.194,-101.25,-122.615,0,-110.875	1/1:84:0,84,0:0:0:84,0:2943,0:-265.091,-25.2865,0,-265.091,-25.2865,-265.091	1/2:199:0,95,104:0:0:95,104:3346,3696:-573.71,-301.305,-272.707,-272.759,0,-241.452	1/1:108:0,108,0:0:0:108,0:3803,0:-342.368,-32.5112,0,-342.368,-32.5112,-342.368	1/2:177:0,86,91:0:0:86,91:3015,3249:-510.55,-265.231,-239.343,-245.672,0,-218.278	1/2:103:0,55,48:0:0:55,48:1951,1724:-299.905,-140.967,-124.41,-159.296,0,-144.846	1/1:136:0,136,0:0:0:136,0:4778,0:-430.165,-40.9401,0,-430.165,-40.9401,-430.165	1/2:45:0,26,19:0:0:26,19:908,684:-130.019,-56.1708,-48.344,-74.2034,0,-68.4838	1/2:26:0,13,12:0:0:13,12:450,428:-71.5341,-34.9895,-31.0761,-36.636,0,-33.0237	1/2:128:0,61,66:0:0:61,66:2172,2364:-369.766,-192.773,-174.41,-176.992,0,-157.124	1/1:72:0,72,0:0:0:72,0:2547,0:-229.476,-21.6742,0,-229.476,-21.6742,-229.476	1/1:14:0,14,0:0:0:14,0:488,0:-44.2254,-4.21442,0,-44.2254,-4.21442,-44.2254	1/1:138:0,137,0:0:0:137,0:4805,0:-432.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chr10	3898075	.	T	C	140014	PASS	AB=0.507998;ABP=5.85872;AC=138;AF=0.741935;AN=186;AO=6760;CIGAR=1X;DP=9293;DPB=9293;DPRA=0;EPP=14682.2;EPPR=5492.49;GTI=0;LEN=1;MEANALT=1.05376;MQM=59.9805;MQMR=60;NS=93;NUMALT=1;ODDS=0.472592;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241324;QR=90141;RO=2528;RPL=0;RPP=14682.2;RPPR=5492.49;RPR=6760;RUN=1;SAF=6760;SAP=14682.2;SAR=0;SRF=2528;SRP=5492.49;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:33,26:33:1168:26:932:-66.4381,0,-87.6664	1/1:92:1,91:1:36:91:3260:-290.022,-24.0965,0	1/1:124:0,124:0:0:124:4416:-397.611,-37.3277,0	0/1:188:124,64:124:4437:64:2272:-148.147,0,-342.906	0/1:58:29,29:29:1014:29:1040:-76.4546,0,-74.1077	0/1:51:29,22:29:1040:22:788:-55.8923,0,-78.5618	0/1:100:65,35:65:2313:35:1260:-83.6025,0,-178.326	0/1:93:40,53:40:1417:53:1888:-142.203,0,-99.8296	0/1:120:61,59:61:2153:59:2095:-152.696,0,-157.913	0/1:85:34,51:34:1224:51:1832:-139.573,0,-84.8795	0/1:100:53,47:53:1904:47:1671:-120.574,0,-141.535	0/1:105:55,50:55:1976:50:1775:-128.424,0,-146.506	1/1:102:0,102:0:0:102:3646:-328.344,-30.7051,0	1/1:138:0,138:0:0:138:4915:-442.501,-41.5421,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	1/1:70:0,70:0:0:70:2469:-222.463,-21.0721,0	1/1:66:0,66:0:0:66:2354:-212.118,-19.868,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:73:30,43:30:1080:43:1527:-115.747,0,-75.5381	0/1:128:54,74:54:1928:74:2648:-200.029,0,-135.265	0/1:190:101,89:101:3601:89:3172:-228.51,0,-267.1	1/1:77:0,77:0:0:77:2756:-248.282,-23.1793,0	1/1:111:0,110:0:0:110:3928:-353.354,-33.1133,0	1/1:25:1,24:1:36:24:860:-74.1236,-3.92748,0	0/1:60:32,28:32:1148:28:996:-71.8931,0,-85.568	1/1:234:1,233:1:36:233:8336:-746.65,-66.8427,0	0/1:204:108,96:108:3853:96:3444:-248.762,0,-285.555	0/1:31:16,15:16:572:15:528:-38.519,0,-42.4815	0/1:207:97,110:97:3434:110:3942:-292.659,0,-246.96	0/1:176:86,90:86:3057:90:3205:-235.691,0,-222.378	1/1:172:2,170:2:72:170:6064:-539.027,-44.9404,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:30:16,14:16:576:14:500:-36.3053,0,-43.1441	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:13:0,12:0:0:12:432:-38.8614,-3.61236,0	0/1:22:10,12:10:360:12:428:-32.2361,0,-26.1216	1/1:167:0,167:0:0:167:5928:-533.626,-50.272,0	0/1:179:73,105:73:2589:105:3739:-282.769,0,-179.315	0/1:69:33,36:33:1188:36:1296:-96.1445,0,-86.4575	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:109:54,55:54:1910:55:1976:-145.302,0,-139.361	0/1:83:43,40:43:1540:40:1427:-103.741,0,-113.908	0/1:140:71,69:71:2510:69:2464:-179.868,0,-184.006	0/1:134:45,89:45:1620:89:3165:-244.736,0,-105.752	1/1:59:0,59:0:0:59:2078:-187.29,-17.7608,0	0/1:125:65,60:65:2301:60:2144:-155.591,0,-169.721	1/1:87:0,87:0:0:87:3112:-280.307,-26.1896,0	0/1:114:59,55:59:2101:55:1972:-143.437,0,-155.04	0/1:78:46,32:46:1652:32:1144:-79.7754,0,-125.488	1/1:142:0,141:0:0:141:5056:-454.824,-42.4452,0	0/1:107:51,56:51:1832:56:2012:-149.143,0,-132.951	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:100:51,49:51:1824:49:1756:-128.221,0,-134.338	1/1:101:0,101:0:0:101:3587:-323.037,-30.404,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:226:1,225:1:36:225:7995:-715.977,-64.4345,0	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:141:81,60:81:2885:60:2160:-152.221,0,-217.44	0/1:141:81,60:81:2859:60:2117:-148.352,0,-215.102	.:.:.:.:.:.:.:.	0/1:100:48,52:48:1709:52:1868:-138.296,0,-123.991	1/1:133:0,133:0:0:133:4753:-427.929,-40.037,0	0/1:76:40,36:40:1436:36:1296:-94.0657,0,-106.659	1/1:100:0,100:0:0:100:3546:-319.344,-30.103,0	0/1:366:115,251:115:4039:251:8946:-694.949,0,-253.52	1/1:249:0,248:0:0:248:8855:-796.578,-74.6554,0	1/1:77:0,77:0:0:77:2750:-247.741,-23.1793,0	1/1:96:0,96:0:0:96:3424:-308.375,-28.8989,0	1/1:79:0,79:0:0:79:2835:-255.387,-23.7814,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:146:0,146:0:0:146:5240:-471.736,-43.9504,0	1/1:69:0,69:0:0:69:2465:-222.103,-20.7711,0	1/1:213:0,213:0:0:213:7597:-683.748,-64.1194,0	1/1:99:0,99:0:0:99:3548:-319.528,-29.802,0	1/1:95:0,95:0:0:95:3391:-305.405,-28.5979,0	1/1:79:1,78:1:36:78:2787:-247.472,-20.1831,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:105:43,62:43:1548:62:2203:-166.927,0,-108.005	0/1:119:68,51:68:2444:51:1820:-128.259,0,-184.392	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:110:0,110:0:0:110:3920:-352.993,-33.1133,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:149:81,68:81:2904:68:2414:-172.662,0,-216.742	1/1:29:0,29:0:0:29:1036:-93.5516,-8.72987,0	0/1:75:33,42:33:1180:42:1491:-111.907,0,-83.9308	0/1:72:33,39:33:1172:39:1392:-103.905,0,-84.1133	0/1:106:63,43:63:2264:43:1539:-106.893,0,-172.113	0/1:208:108,100:108:3872:100:3562:-258.173,0,-286.06	0/1:113:52,61:52:1859:61:2188:-163.169,0,-133.572	1/1:136:0,136:0:0:136:4836:-435.387,-40.9401,0	1/1:82:0,82:0:0:82:2935:-264.384,-24.6845,0
chr10	3905310	.	AAC	GAC	25327.8	PASS	AB=0.48736;ABP=7.34699;AC=49;AF=0.260638;AN=188;AO=1523;CIGAR=1X2M;DP=5486;DPB=5486;DPRA=1.21554;EPP=3310.16;EPPR=8578.15;GTI=0;LEN=1;MEANALT=1.14286;MQM=59.9803;MQMR=59.9959;NS=94;NUMALT=1;ODDS=1.72824;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54535;QR=139536;RO=3949;RPL=0;RPP=3310.16;RPPR=8578.15;RPR=1523;RUN=1;SAF=1523;SAP=3310.16;SAR=0;SRF=3949;SRP=8578.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:12,4:12:422:4:144:-8.14111,0,-33.1454	0/0:68:68,0:68:2426:0:0:0,-20.47,-218.596	0/0:101:101,0:101:3558:0:0:0,-30.404,-320.431	0/1:148:85,63:85:3025:63:2256:-158.75,0,-227.928	0/1:66:42,23:42:1506:23:813:-53.5626,0,-115.908	0/1:30:22,8:22:764:8:280:-16.5084,0,-60.0475	0/1:87:35,52:35:1244:52:1868:-142.209,0,-86.0749	0/1:103:35,68:35:1242:68:2434:-188.309,0,-81.0786	0/1:66:32,34:32:1136:34:1216:-89.8786,0,-82.6802	0/1:70:36,34:36:1258:34:1213:-88.4031,0,-92.448	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:35:19,16:19:661:16:576:-41.6389,0,-49.2771	0/0:37:37,0:37:1314:0:0:0,-11.1381,-118.562	0/0:26:26,0:26:930:0:0:0,-7.82678,-84.0189	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.085	0/0:28:28,0:28:962:0:0:0,-8.42884,-86.8871	0/0:42:42,0:42:1490:0:0:0,-12.6433,-134.393	0/0:25:25,0:25:893:0:0:0,-7.52575,-80.6899	0/1:13:5,8:5:178:8:284:-21.99,0,-12.4553	0/1:135:80,55:80:2834:55:1972:-137.116,0,-214.662	0/1:48:24,24:24:843:24:860:-63.2724,0,-61.7382	0/0:116:116,0:116:4081:0:0:0,-34.9195,-367.48	0/0:51:51,0:51:1801:0:0:0,-15.3525,-162.372	0/0:28:27,0:27:956:0:0:0,-8.12781,-85.9965	0/1:53:24,29:24:850:29:1044:-78.3202,0,-60.8654	0/0:188:188,0:188:6630:0:0:0,-56.5936,-596.788	0/1:107:48,59:48:1707:59:2116:-158.499,0,-121.706	0/1:17:10,7:10:350:7:252:-17.9114,0,-26.7187	0/1:200:104,96:104:3702:96:3439:-249.516,0,-273.177	0/1:41:30,10:30:1055:10:356:-19.9806,0,-82.8594	0/0:79:79,0:79:2792:0:0:0,-23.7814,-251.522	0/0:10:10,0:10:333:0:0:0,-3.0103,-30.2926	0/1:22:9,13:9:318:13:468:-35.837,0,-22.3383	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7783	0/1:5:1,4:1:34:4:140:-11.4394,0,-1.89376	0/0:98:97,0:97:3456:0:0:0,-29.1999,-310.893	0/1:117:51,66:51:1788:66:2361:-177.526,0,-125.981	0/1:26:15,10:15:535:10:360:-24.8587,0,-40.5989	0/1:4:2,2:2:63:2:72:-5.6326,0,-4.77903	0/1:63:31,32:31:1073:32:1137:-83.6721,0,-77.9104	0/1:37:14,23:14:497:23:824:-63.3452,0,-33.9266	0/1:94:57,37:57:1985:37:1332:-91.8856,0,-150.626	0/1:35:17,18:17:607:18:644:-47.7545,0,-44.4255	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7679	0/1:115:60,55:60:2096:55:1960:-142.057,0,-154.29	0/0:66:66,0:66:2322:0:0:0,-19.868,-209.241	0/1:112:54,58:54:1879:58:2084:-154.115,0,-135.671	0/1:91:45,45:45:1577:45:1612:-117.918,0,-114.767	0/0:96:96,0:96:3384:0:0:0,-28.8989,-304.774	0/1:131:80,51:80:2850:51:1817:-124.374,0,-217.304	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:87:52,35:52:1836:35:1246:-86.2549,0,-139.33	0/0:27:27,0:27:950:0:0:0,-8.12781,-85.8144	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:82:82,0:82:2888:0:0:0,-24.6845,-260.159	0/1:38:11,27:11:381:27:972:-76.3588,0,-23.182	0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64733	0/1:7:4,3:4:137:3:108:-7.96796,0,-10.5606	0/1:74:36,38:36:1275:38:1368:-101.145,0,-92.7762	0/1:80:43,37:43:1536:37:1332:-96.1,0,-114.451	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:126:71,55:71:2502:55:1964:-139.104,0,-187.504	0/0:112:112,0:112:3990:0:0:0,-33.7154,-359.292	0/1:41:8,33:8:288:33:1175:-93.4442,0,-13.9252	0/0:66:66,0:66:2338:0:0:0,-19.868,-210.68	0/1:109:55,54:55:1922:54:1928:-140.984,0,-140.444	0/0:76:76,0:76:2693:0:0:0,-22.8783,-242.616	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.425	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.489	0/0:57:57,0:57:2003:0:0:0,-17.1587,-180.542	0/0:17:17,0:17:590:0:0:0,-5.11751,-53.4238	0/0:54:54,0:54:1899:0:0:0,-16.2556,-171.186	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.849	0/0:76:76,0:76:2656:0:0:0,-22.8783,-239.231	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.103	0/0:113:112,0:112:3950:0:0:0,-33.7154,-355.336	0/0:43:42,0:42:1479:0:0:0,-12.6433,-133.042	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2989	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/1:54:31,23:31:1100:23:824:-58.2277,0,-83.0544	0/1:150:67,81:67:2396:81:2908:-217.043,0,-170.985	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/0:17:17,0:17:595:0:0:0,-5.11751,-53.8772	0/0:37:37,0:37:1287:0:0:0,-11.1381,-116.129	0/1:68:34,34:34:1204:34:1216:-89.2765,0,-88.1953	0/0:34:34,0:34:1213:0:0:0,-10.235,-109.477	0/1:37:21,15:21:750:15:540:-37.8426,0,-56.7342	0/1:37:25,12:25:883:12:432:-28.0831,0,-68.6496	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5022	0/1:25:9,16:9:324:16:572:-44.2877,0,-21.9801	0/1:51:19,32:19:659:32:1152:-88.6376,0,-44.2803	0/0:78:78,0:78:2740:0:0:0,-23.4803,-246.843	0/0:40:40,0:40:1434:0:0:0,-12.0412,-129.358
chr10	3905913	.	G	A	124163	PASS	AB=0.443769;ABP=120.474;AC=135;AF=0.725806;AN=186;AO=4782;CIGAR=1X;DP=7175;DPB=7175;DPRA=15.587;EPP=842.901;EPPR=370.214;GTI=5;LEN=1;MEANALT=1.01087;MQM=59.9437;MQMR=59.9728;NS=93;NUMALT=1;ODDS=0.285136;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170690;QR=84962;RO=2392;RPL=3094;RPP=900.678;RPPR=410.524;RPR=1688;RUN=1;SAF=23;SAP=10188.2;SAR=4759;SRF=17;SRP=5050.56;SRR=2375;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:5,18:5:180:18:644:-51.3669,0,-9.62837	1/1:91:0,91:0:0:91:3259:-293.53,-27.3937,0	1/1:61:0,61:0:0:61:2176:-196.106,-18.3628,0	0/1:144:97,47:97:3466:47:1672:-107.418,0,-268.705	0/1:39:26,13:26:932:13:457:-29.7225,0,-72.4587	0/1:39:14,25:14:491:25:896:-69.2202,0,-32.7809	0/1:131:82,49:82:2892:49:1764:-119.609,0,-221.081	0/1:80:56,24:56:1965:24:860:-53.6394,0,-153.041	0/1:88:49,39:49:1739:39:1395:-99.3577,0,-130.303	0/1:103:65,38:65:2319:38:1352:-90.9743,0,-177.964	0/1:52:18,34:18:636:34:1220:-94.4532,0,-41.9145	0/1:87:39,48:39:1377:48:1696:-126.726,0,-98.0371	1/1:65:0,65:0:0:65:2323:-209.328,-19.567,0	1/1:60:0,60:0:0:60:2130:-191.967,-18.0618,0	1/1:48:0,48:0:0:48:1710:-154.184,-14.4494,0	1/1:40:0,40:0:0:40:1412:-127.375,-12.0412,0	1/1:64:0,64:0:0:64:2288:-206.178,-19.2659,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:73:37,36:37:1324:36:1283:-93.7974,0,-97.4869	0/1:163:88,75:88:3136:75:2680:-192.377,0,-233.399	0/1:236:157,79:157:5570:79:2823:-183.266,0,-430.384	1/1:50:1,49:1:36:49:1764:-155.445,-11.4532,0	1/1:37:0,37:0:0:37:1308:-118.019,-11.1381,0	0/1:30:4,26:4:135:26:915:-73.6341,0,-3.45161	0/1:48:27,21:27:964:21:752:-53.5568,0,-72.6274	1/1:189:0,189:0:0:189:6771:-609.448,-56.8947,0	0/1:149:89,60:89:3176:60:2156:-149.453,0,-241.212	0/1:36:19,17:19:680:17:612:-44.5764,0,-50.6921	0/1:232:129,103:129:4590:103:3687:-262.193,0,-343.372	0/1:137:64,73:64:2275:73:2608:-193.726,0,-163.771	1/1:103:0,103:0:0:103:3669:-330.413,-31.0061,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:22:18,4:18:644:4:144:-6.69096,0,-51.6679	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:188:1,187:1:36:187:6678:-597.498,-52.9954,0	0/1:166:96,70:96:3428:70:2503:-175.546,0,-258.763	0/1:62:32,30:32:1126:30:1080:-78.8478,0,-82.9828	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:135:77,57:77:2711:57:2039:-143.084,0,-203.535	0/1:45:25,20:25:887:20:693:-49.0123,0,-66.6018	0/1:79:42,37:42:1492:37:1324:-95.6807,0,-110.793	0/1:62:30,32:30:1076:32:1122:-82.6199,0,-78.489	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:68:44,24:44:1555:24:864:-57.6125,0,-119.771	1/1:117:0,117:0:0:117:4152:-373.826,-35.2205,0	0/1:150:88,62:88:3108:62:2220:-154.91,0,-234.792	0/1:80:34,46:34:1211:46:1627:-122.635,0,-85.2131	1/1:107:1,106:1:36:106:3799:-338.505,-28.6119,0	0/1:89:52,37:52:1834:37:1300:-90.507,0,-138.548	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:121:57,64:57:2028:64:2296:-170.468,0,-146.368	1/1:35:1,34:1:36:34:1212:-105.788,-6.93778,0	1/1:13:0,13:0:0:13:467:-42.3692,-3.91339,0	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	0/1:51:25,26:25:892:26:928:-68.4249,0,-65.2462	.:.:.:.:.:.:.:.	0/1:15:10,5:10:342:5:180:-12.0366,0,-26.5936	0/1:56:35,21:35:1243:21:756:-51.5095,0,-95.3162	0/1:112:55,57:55:1955:57:2044:-150.516,0,-142.51	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:164:94,70:94:3360:70:2484:-174.443,0,-253.248	1/1:116:1,115:1:36:115:4115:-366.933,-31.3212,0	0/1:60:34,26:34:1208:26:936:-66.4977,0,-90.9643	1/1:55:0,55:0:0:55:1948:-175.594,-16.5567,0	0/1:138:78,60:78:2787:60:2143:-151.589,0,-209.528	1/1:68:0,68:0:0:68:2416:-217.694,-20.47,0	1/1:24:0,24:0:0:24:838:-75.7347,-7.22472,0	1/1:44:0,44:0:0:44:1568:-141.402,-13.2453,0	1/1:81:1,80:1:36:80:2872:-255.118,-20.7852,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:110:0,110:0:0:110:3911:-352.167,-33.1133,0	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	1/1:118:0,118:0:0:118:4205:-378.499,-35.5215,0	1/1:131:3,128:3:108:128:4563:-400.704,-29.3598,0	1/1:43:0,43:0:0:43:1536:-138.306,-12.9443,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:98:0,98:0:0:98:3520:-317.004,-29.5009,0	0/1:93:47,46:47:1676:46:1643:-120.162,0,-123.131	0/1:122:83,39:83:2922:39:1392:-88.8534,0,-226.491	1/1:65:0,65:0:0:65:2304:-207.618,-19.567,0	1/1:46:0,46:0:0:46:1638:-147.707,-13.8474,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:113:51,62:51:1807:62:2215:-165.598,0,-128.895	1/1:31:0,31:0:0:31:1109:-100.12,-9.33193,0	0/1:75:36,39:36:1277:39:1385:-102.37,0,-92.6539	0/1:58:26,32:26:932:32:1143:-85.719,0,-66.7391	0/1:35:19,16:19:676:16:576:-41.6389,0,-50.6319	0/1:126:60,66:60:2111:66:2339:-172.837,0,-152.324	0/1:73:52,21:52:1859:21:747:-45.5791,0,-145.614	1/1:82:0,82:0:0:82:2909:-262.042,-24.6845,0	1/1:90:0,90:0:0:90:3217:-289.75,-27.0927,0
chr10	3906372	.	G	A	109159	PASS	AB=0.507321;ABP=7.33454;AC=48;AF=0.255319;AN=188;AO=4737;CIGAR=1X;DP=17609;DPB=17609;DPRA=1.31318;EPP=10271.9;EPPR=27913;GTI=1;LEN=1;MEANALT=1.10526;MQM=59.9964;MQMR=59.9944;NS=94;NUMALT=1;ODDS=1.64619;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=169690;QR=458646;RO=12865;RPL=2329;RPP=5.87122;RPPR=140.034;RPR=2408;RUN=1;SAF=2327;SAP=6.16826;SAR=2410;SRF=5979;SRP=141.865;SRR=6886;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:26,31:26:923:31:1104:-82.2648,0,-65.9803	0/0:306:305,1:305:10871:1:36:0,-88.5169,-974.691	0/0:225:224,1:224:8020:1:36:0,-64.1335,-718.219	0/1:487:263,224:263:9399:224:8052:-578.093,0,-699.27	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	0/1:273:133,140:133:4690:140:4953:-363.74,0,-340.078	0/1:280:113,167:113:4060:167:5980:-454.018,0,-281.297	0/1:243:116,127:116:4067:127:4557:-337.144,0,-293.067	0/1:216:114,102:114:4068:102:3627:-261.612,0,-301.283	0/1:121:64,56:64:2289:56:2012:-144.87,0,-169.786	0/1:195:96,99:96:3425:99:3556:-261.546,0,-249.762	0/0:177:177,0:177:6349:0:0:0,-53.2823,-571.497	0/0:128:128,0:128:4554:0:0:0,-38.5318,-410.025	0/0:171:171,0:171:6099:0:0:0,-51.4761,-549.011	0/0:139:139,0:139:4955:0:0:0,-41.8432,-446.098	0/0:115:115,0:115:4094:0:0:0,-34.6184,-368.647	0/0:97:97,0:97:3453:0:0:0,-29.1999,-310.982	0/1:57:31,26:31:1116:26:928:-66.6795,0,-83.593	0/1:334:166,168:166:5914:168:6039:-443.066,0,-431.825	0/1:402:206,196:206:7306:196:6972:-506.531,0,-536.58	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:200:200,0:200:7127:0:0:0,-60.206,-641.486	0/0:223:214,9:214:7667:9:315:0,-38.4425,-661.377	0/1:99:40,59:40:1440:59:2124:-161.626,0,-100.096	0/0:581:581,0:581:20713:0:0:0,-174.898,-1863.66	0/1:550:281,269:281:10001:269:9637:-701.713,0,-734.46	0/1:76:35,41:35:1252:41:1460:-108.817,0,-90.1068	0/1:456:202,254:202:7236:254:9115:-683.052,0,-514.02	0/1:253:128,125:128:4560:125:4455:-324.959,0,-334.405	0/0:321:321,0:321:11394:0:0:0,-96.6306,-1025.34	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:35:15,20:15:536:20:720:-54.5927,0,-38.0388	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:16:16,0:16:557:0:0:0,-4.81648,-50.4556	0/1:43:19,24:19:680:24:864:-65.1383,0,-48.5849	0/0:408:408,0:408:14591:0:0:0,-122.82,-1312.93	0/1:151:67,84:67:2385:84:3024:-226.934,0,-169.451	0/1:125:67,58:67:2397:58:2084:-150.201,0,-178.356	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:262:127,135:127:4493:135:4813:-354.456,0,-325.668	0/1:76:38,38:38:1364:38:1355:-99.3714,0,-100.182	0/1:180:104,76:104:3716:76:2736:-192.296,0,-280.457	0/1:146:76,70:76:2704:70:2512:-182.381,0,-199.652	0/0:151:151,0:151:5310:0:0:0,-45.4555,-478.032	0/1:188:105,83:105:3753:83:2959:-209.949,0,-281.375	0/0:192:192,0:192:6873:0:0:0,-57.7978,-618.637	0/1:273:137,135:137:4886:135:4833:-352.883,0,-357.651	0/1:231:104,127:104:3707:127:4551:-340.217,0,-264.295	0/0:259:259,0:259:9243:0:0:0,-77.9668,-831.837	0/1:242:127,114:127:4517:114:4083:-294.896,0,-333.94	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:274:126,148:126:4509:148:5312:-395.73,0,-323.494	0/0:102:102,0:102:3618:0:0:0,-30.7051,-325.825	0/0:36:36,0:36:1270:0:0:0,-10.8371,-114.601	0/0:260:260,0:260:9252:0:0:0,-78.2678,-832.649	0/1:79:53,26:53:1876:26:936:-60.7781,0,-145.335	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/1:39:21,18:21:756:18:648:-46.9117,0,-56.6271	0/1:218:105,113:105:3764:113:4054:-299.421,0,-273.334	0/1:165:79,86:79:2813:86:3087:-228.387,0,-203.739	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:342:174,167:174:6224:167:5983:-435.712,0,-457.392	0/0:345:343,2:343:12208:2:72:0,-97.0186,-1091.73	0/1:80:47,33:47:1680:33:1180:-82.4251,0,-127.405	0/0:127:127,0:127:4496:0:0:0,-38.2308,-404.809	0/1:295:126,169:126:4520:169:6054:-456.151,0,-318.163	0/0:263:263,0:263:9360:0:0:0,-79.1709,-842.367	0/0:86:85,1:85:3036:1:36:0,-22.2903,-269.872	0/0:191:191,0:191:6766:0:0:0,-57.4967,-609.014	0/0:133:133,0:133:4752:0:0:0,-40.037,-427.836	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/0:191:191,0:191:6814:0:0:0,-57.4967,-613.322	0/0:175:175,0:175:6249:0:0:0,-52.6802,-562.505	0/0:511:510,1:510:18097:1:36:0,-150.228,-1623.96	0/0:352:352,0:352:12576:0:0:0,-105.963,-1131.67	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:289:284,5:284:10136:5:180:0,-70.4456,-895.619	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:244:240,4:240:8601:4:144:0,-60.1377,-760.769	0/1:213:113,100:113:4015:100:3579:-258.197,0,-297.419	0/1:427:211,214:211:7457:214:7668:-561.856,0,-542.88	0/0:170:170,0:170:6049:0:0:0,-51.1751,-544.511	0/0:135:135,0:135:4809:0:0:0,-40.639,-432.964	0/0:186:186,0:186:6655:0:0:0,-55.9916,-599.028	0/1:279:138,141:138:4930:141:5063:-371.825,0,-359.863	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:164:73,91:73:2612:91:3268:-244.971,0,-185.959	0/1:155:80,75:80:2843:75:2692:-195.865,0,-208.672	0/1:93:45,48:45:1608:48:1724:-127.45,0,-117.014	0/1:165:82,83:82:2944:83:2974:-218.223,0,-215.523	0/1:190:66,124:66:2364:124:4464:-344.732,0,-155.823	0/0:267:266,1:266:9497:1:36:0,-76.7767,-851.089	0/0:239:239,0:239:8564:0:0:0,-71.9462,-770.756
chr10	4000978	.	A	T	31624.3	PASS	AB=0.351816;ABP=1189.72;AC=89;AF=0.478495;AN=186;AO=2199;CIGAR=1X;DP=6328;DPB=6328;DPRA=7.77901;EPP=4640.12;EPPR=8597.07;GTI=12;LEN=1;MEANALT=1.05556;MQM=59.9259;MQMR=59.9901;NS=93;NUMALT=1;ODDS=1.02669;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78601;QR=147584;RO=4124;RPL=2183;RPP=4640.12;RPPR=8605.58;RPR=16;RUN=1;SAF=0;SAP=4778.08;SAR=2199;SRF=1;SRP=8949.48;SRR=4123;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:56:42,13:42:1491:13:468:-25.5432,0,-117.567	0/1:61:45,16:45:1620:16:566:-32.9065,0,-127.727	0/1:184:91,93:91:3252:93:3328:-244.348,0,-237.511	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:15:14,1:14:500:1:32:0,-1.31614,-42.1369	0/1:42:19,23:19:684:23:824:-61.8401,0,-49.2471	0/1:61:50,11:50:1780:11:392:-17.2572,0,-142.12	0/1:51:30,21:30:1080:21:748:-52.2928,0,-82.1607	0/1:85:50,35:50:1784:35:1260:-88.1133,0,-135.255	0/1:61:28,33:28:995:33:1188:-88.8658,0,-71.5012	0/1:113:59,54:59:2099:54:1940:-140.86,0,-155.163	0/1:79:45,34:45:1608:34:1224:-86.675,0,-121.229	0/1:75:49,26:49:1747:26:933:-61.7118,0,-134.936	0/1:70:37,32:37:1320:32:1144:-82.1387,0,-97.9711	0/1:49:28,21:28:1000:21:752:-53.2558,0,-75.5649	0/1:34:18,16:18:640:16:564:-40.8553,0,-47.6943	0/1:30:18,12:18:648:12:432:-30.1903,0,-49.6033	0/1:32:13,19:13:468:19:680:-51.8962,0,-32.8267	0/1:79:61,18:61:2176:18:648:-34.8705,0,-172.325	0/1:108:85,23:85:3060:23:824:-41.9721,0,-243.117	0/1:37:29,8:29:1040:8:288:-15.1293,0,-82.7763	0/1:74:40,34:40:1436:34:1216:-87.4703,0,-107.253	0/1:65:52,13:52:1863:13:460:-22.1684,0,-148.382	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:176:137,39:137:4904:39:1404:-73.678,0,-388.53	0/1:158:91,67:91:3260:67:2389:-167.698,0,-246.058	0/1:37:18,19:18:644:19:684:-50.7522,0,-47.1525	0/1:149:118,31:118:4209:31:1112:-55.5379,0,-334.137	0/1:103:90,13:90:3224:13:464:-11.0914,0,-259.376	0/1:81:42,38:42:1495:38:1360:-98.4044,0,-110.548	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:209:142,67:142:5065:67:2396:-152.98,0,-393.076	0/1:96:84,12:84:3012:12:432:-10.3223,0,-242.412	0/1:53:25,28:25:900:28:1004:-74.7213,0,-65.3664	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:66:35,31:35:1243:31:1112:-80.5234,0,-92.3059	0/1:34:18,15:18:648:15:536:-38.2812,0,-48.3581	0/1:59:32,27:32:1148:27:968:-69.6766,0,-85.8691	0/1:54:26,28:26:932:28:996:-73.6993,0,-67.9432	0/1:60:45,15:45:1616:15:540:-30.8747,0,-127.668	0/1:39:33,6:33:1184:6:216:-8.05034,0,-95.1281	0/1:30:22,8:22:784:8:284:-16.8691,0,-61.853	0/1:90:57,33:57:2044:33:1172:-78.6948,0,-157.137	0/1:72:35,37:35:1260:37:1324:-97.787,0,-92.0313	0/1:88:50,38:50:1766:38:1364:-96.5701,0,-132.731	0/1:86:69,17:69:2480:17:612:-29.5249,0,-197.564	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:71:37,34:37:1328:34:1216:-88.3734,0,-98.4491	0/1:46:26,20:26:924:20:720:-51.2814,0,-69.6303	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:81:52,29:52:1872:29:1032:-68.81,0,-144.376	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1277	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:49:28,21:28:988:21:756:-53.6168,0,-74.4834	0/1:123:95,28:95:3388:28:1000:-53.2887,0,-268.107	.:.:.:.:.:.:.:.	0/1:180:98,82:98:3505:82:2933:-210.014,0,-261.473	0/1:94:69,25:69:2455:25:885:-51.6697,0,-192.908	0/1:42:30,12:30:1076:12:417:-25.217,0,-84.5096	0/1:49:39,10:39:1404:10:360:-17.9938,0,-111.909	0/1:113:91,21:91:3268:21:729:-31.8541,0,-260.264	0/1:102:91,11:91:3253:11:396:-5.27769,0,-262.278	0/1:40:17,23:17:608:23:828:-62.8029,0,-43.0108	0/1:45:37,8:37:1332:8:288:-12.7211,0,-106.636	0/1:59:41,18:41:1468:18:648:-40.8911,0,-114.655	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:97:73,24:73:2616:24:857:-48.251,0,-206.488	0/0:59:55,4:55:1976:4:140:0,-4.81619,-165.17	0/1:135:109,26:109:3907:26:921:-42.5662,0,-311.183	0/1:107:72,35:72:2588:35:1252:-80.7749,0,-200.958	0/1:29:21,8:21:756:8:288:-17.5375,0,-59.6374	0/1:97:79,18:79:2832:18:644:-29.0907,0,-225.919	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:69:40,29:40:1423:29:1044:-73.4991,0,-107.596	0/1:49:27,22:27:972:22:784:-56.1334,0,-73.0474	0/1:137:84,53:84:3012:53:1869:-127.05,0,-230.07	0/1:166:92,74:92:3299:74:2641:-187.964,0,-247.157	0/1:89:50,39:50:1792:39:1392:-98.7312,0,-134.771	0/1:43:20,23:20:702:23:828:-61.8998,0,-50.5582	0/1:137:75,62:75:2673:62:2188:-155.931,0,-199.573	0/1:14:7,7:7:243:7:248:-18.4498,0,-17.9931	0/1:87:41,46:41:1472:46:1652:-122.771,0,-106.587	0/1:78:46,32:46:1641:32:1128:-78.3479,0,-124.496	0/1:48:29,19:29:1036:19:676:-46.7186,0,-79.1045	0/1:130:99,31:99:3556:31:1105:-60.6253,0,-281.113	0/1:77:63,14:63:2255:14:504:-22.5188,0,-180.033	0/1:114:60,54:60:2143:54:1932:-139.839,0,-158.82	0/1:111:54,57:54:1944:57:2040:-150.458,0,-141.822
chr10	4001000	.	A	G	46635.3	PASS	AB=0.450629;ABP=137.663;AC=95;AF=0.510753;AN=186;AO=2874;CIGAR=1X;DP=6368;DPB=6368;DPRA=0;EPP=6157.27;EPPR=7468.95;GTI=0;LEN=1;MEANALT=1.04301;MQM=59.944;MQMR=59.9934;NS=93;NUMALT=1;ODDS=0.717568;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102698;QR=124907;RO=3490;RPL=2864;RPP=6157.27;RPPR=7477.58;RPR=10;RUN=1;SAF=0;SAP=6243.82;SAR=2874;SRF=1;SRP=7572.77;SRR=3489;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:56:17,39:17:597:39:1396:-109.081,0,-37.1984	0/1:63:39,24:39:1396:24:849:-57.7638,0,-106.974	0/1:185:90,95:90:3224:95:3396:-250.164,0,-234.692	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:15:2,13:2:68:13:464:-37.5821,0,-1.94226	0/1:42:19,23:19:680:23:828:-62.2009,0,-48.8859	0/1:62:37,25:37:1332:25:900:-62.6572,0,-101.519	0/1:50:30,20:30:1072:20:720:-50.0773,0,-81.741	0/1:86:50,35:50:1796:35:1252:-87.0332,0,-135.975	0/1:63:30,33:30:1080:33:1184:-87.9034,0,-78.5484	0/1:113:59,54:59:2111:54:1940:-140.86,0,-156.242	0/1:82:45,36:45:1612:36:1270:-89.8577,0,-120.627	0/1:78:47,31:47:1684:31:1108:-76.546,0,-128.367	0/1:73:39,34:39:1400:34:1200:-86.3285,0,-104.324	0/1:47:28,19:28:1004:19:676:-47.0196,0,-76.5275	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/1:30:18,12:18:636:12:432:-30.1903,0,-48.5195	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	0/1:79:46,33:46:1656:33:1188:-83.4472,0,-125.547	0/1:113:76,37:76:2716:37:1324:-85.4457,0,-210.667	0/1:36:20,16:20:712:16:572:-40.9763,0,-53.5696	0/1:74:40,34:40:1436:34:1216:-87.4703,0,-107.253	0/1:67:53,14:53:1889:14:504:-25.5291,0,-150.117	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/1:177:106,71:106:3804:71:2548:-176.288,0,-289.275	0/1:157:91,66:91:3252:66:2368:-165.987,0,-245.64	0/1:37:18,19:18:644:19:669:-49.3967,0,-47.1525	0/1:146:85,61:85:3040:61:2184:-152.876,0,-229.88	0/1:100:48,52:48:1716:52:1872:-138.656,0,-124.623	0/1:83:45,38:45:1612:38:1349:-96.7236,0,-120.385	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:213:98,115:98:3488:115:4111:-306.054,0,-250.011	0/1:96:52,44:52:1864:44:1584:-113.953,0,-139.141	0/1:55:26,29:26:928:29:1040:-77.3577,0,-67.2816	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:67:36,31:36:1288:31:1089:-77.958,0,-96.0546	0/1:34:18,16:18:648:16:576:-41.94,0,-48.4169	0/1:57:31,26:31:1112:26:932:-67.0402,0,-83.2326	0/1:56:27,29:27:972:29:1040:-77.0567,0,-70.9402	0/1:62:25,37:25:896:37:1322:-100.618,0,-62.2965	0/1:40:22,18:22:788:18:644:-46.2494,0,-59.2036	0/1:29:22,7:22:780:7:252:-14.2991,0,-61.7932	0/1:89:55,34:55:1953:34:1224:-83.6754,0,-149.25	0/1:72:35,37:35:1260:37:1324:-97.7856,0,-92.0313	0/1:90:52,38:52:1860:38:1345:-94.2555,0,-140.587	0/1:86:51,35:51:1832:35:1248:-86.7363,0,-139.272	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:69:36,33:36:1277:33:1168:-84.6561,0,-94.46	0/1:45:26,19:26:932:19:684:-48.344,0,-70.6525	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:81:52,29:52:1868:29:1028:-68.449,0,-144.016	0/1:32:14,18:14:496:18:648:-49.0189,0,-35.3413	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:48:27,21:27:968:21:756:-53.9178,0,-72.9879	0/1:123:57,66:57:2040:66:2372:-176.711,0,-146.845	.:.:.:.:.:.:.:.	0/1:182:98,84:98:3497:84:2963:-212.113,0,-260.152	0/1:93:46,47:46:1656:47:1669:-122.5,0,-121.333	0/1:43:30,13:30:1068:13:453:-28.1553,0,-83.4878	0/1:53:25,28:25:880:28:1000:-74.3608,0,-63.5631	0/1:115:60,55:60:2152:55:1968:-142.777,0,-159.329	0/1:99:71,28:71:2525:28:1008:-61.2344,0,-197.699	0/1:39:16,23:16:576:23:828:-63.1039,0,-40.4348	0/1:47:25,22:25:892:22:792:-57.4573,0,-66.4513	0/1:61:24,37:24:864:37:1324:-101.099,0,-59.7197	0/1:13:7,5:7:252:5:180:-12.5799,0,-19.0568	0/1:98:59,39:59:2120:39:1388:-95.718,0,-161.568	0/1:61:44,17:44:1557:17:604:-36.3278,0,-122.057	0/1:136:84,52:84:3012:52:1853:-126.109,0,-230.371	0/1:109:72,37:72:2584:37:1324:-86.6498,0,-199.997	0/1:29:14,15:14:504:15:536:-39.8449,0,-36.9682	0/1:96:61,35:61:2188:35:1260:-84.8066,0,-168.287	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:69:40,29:40:1432:29:1044:-73.4991,0,-108.407	0/1:50:28,22:28:1004:22:792:-56.5542,0,-75.6244	0/1:137:84,53:84:3008:53:1868:-127.039,0,-229.71	0/1:163:90,73:90:3217:73:2608:-185.901,0,-240.683	0/1:90:51,39:51:1832:39:1404:-99.5666,0,-138.068	0/1:44:20,24:20:703:24:864:-64.8372,0,-50.3482	0/1:138:72,66:72:2577:66:2348:-170.033,0,-190.635	0/1:14:7,7:7:248:7:248:-18.4498,0,-18.4498	0/1:86:41,45:41:1476:45:1616:-119.833,0,-107.248	0/1:78:46,32:46:1656:32:1135:-78.9777,0,-125.848	0/1:50:30,20:30:1072:20:720:-50.0773,0,-81.741	0/1:138:73,65:73:2620:65:2298:-165.538,0,-194.505	0/1:74:32,42:32:1140:42:1499:-112.928,0,-80.633	0/1:115:60,54:60:2148:54:1936:-139.839,0,-158.91	0/1:109:53,56:53:1908:56:2000:-147.461,0,-139.185
chr10	4001155	.	A	G	128521	PASS	AB=0.492823;ABP=5.06748;AC=141;AF=0.75;AN=188;AO=6190;CIGAR=1X;DP=8540;DPB=8540;DPRA=0;EPP=13444.4;EPPR=5090.77;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9661;MQMR=59.9838;NS=94;NUMALT=1;ODDS=0.333052;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221438;QR=84003;RO=2347;RPL=6190;RPP=13444.4;RPPR=5082.1;RPR=0;RUN=1;SAF=0;SAP=13444.4;SAR=6190;SRF=1;SRP=5090.77;SRR=2346;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:6,28:6:216:28:983:-78.5471,0,-9.55549	1/1:148:0,148:0:0:148:5272:-474.619,-44.5524,0	1/1:105:0,105:0:0:105:3772:-339.678,-31.6082,0	0/1:241:120,121:120:4288:121:4344:-318.586,0,-313.55	0/1:25:8,17:8:288:17:612:-47.8877,0,-18.7417	0/1:52:25,27:25:900:27:964:-71.4233,0,-65.6675	0/1:123:66,57:66:2352:57:2036:-146.486,0,-174.913	0/1:214:119,95:119:4256:95:3384:-240.185,0,-318.799	0/1:54:28,26:28:1000:26:932:-67.9432,0,-74.0598	0/1:137:77,60:77:2748:60:2152:-152.706,0,-206.322	0/1:59:32,27:32:1152:27:960:-68.9555,0,-86.2294	0/1:72:29,42:29:1032:42:1512:-114.642,0,-71.4607	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:66:0,66:0:0:66:2363:-212.928,-19.868,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:84:0,84:0:0:84:2967:-267.261,-25.2865,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:42:21,21:21:741:21:752:-55.363,0,-54.3683	0/1:267:125,142:125:4496:142:5068:-375.892,0,-324.431	0/1:121:66,55:66:2368:55:1972:-141.326,0,-176.953	1/1:84:1,83:1:36:83:2964:-263.395,-21.6882,0	1/1:23:1,22:1:36:22:792:-68.0074,-3.32542,0	1/1:122:9,113:9:316:113:4044:-335.369,-7.9468,0	0/1:33:13,20:13:464:20:712:-54.4727,0,-32.1635	1/1:302:1,301:1:36:301:10781:-966.537,-87.3128,0	0/1:204:103,101:103:3665:101:3624:-264.955,0,-268.644	0/1:35:21,14:21:752:14:496:-34.4382,0,-57.4702	0/1:197:113,83:113:4056:83:2984:-209.43,0,-305.808	0/1:192:95,97:95:3392:97:3476:-255.254,0,-247.698	1/1:131:1,130:1:36:130:4664:-416.293,-35.8367,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:201:0,201:0:0:201:7207:-648.682,-60.507,0	0/1:135:82,53:82:2928:53:1887:-129.469,0,-223.116	0/1:61:27,34:27:960:34:1220:-91.744,0,-68.3534	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:156:78,78:78:2796:78:2779:-203.39,0,-204.919	0/1:36:16,20:16:576:20:720:-54.2917,0,-41.3379	0/1:96:44,52:44:1576:52:1852:-138.061,0,-113.233	0/1:84:36,48:36:1288:48:1716:-129.439,0,-90.9371	1/1:65:0,65:0:0:65:2335:-210.409,-19.567,0	0/1:66:26,40:26:932:40:1432:-109.31,0,-64.3309	1/1:77:0,77:0:0:77:2764:-248.914,-23.1793,0	0/1:103:54,49:54:1932:49:1760:-127.25,0,-143.15	0/1:87:40,47:40:1436:47:1692:-126.377,0,-103.348	1/1:168:0,168:0:0:168:5997:-539.835,-50.573,0	0/1:125:62,62:62:2228:62:2224:-162.884,0,-163.244	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/1:117:53,64:53:1892:64:2292:-171.318,0,-135.338	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	0/1:26:9,17:9:320:17:604:-46.8638,0,-21.3156	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:22:13,9:13:464:9:320:-22.5197,0,-35.4748	0/1:79:48,31:48:1720:31:1112:-76.61,0,-131.304	0/1:123:66,57:66:2372:57:2044:-147.205,0,-176.711	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:202:117,85:117:4204:85:3036:-212.663,0,-317.675	1/1:185:0,185:0:0:185:6597:-593.808,-55.6906,0	0/1:116:55,61:55:1972:61:2192:-162.626,0,-142.834	1/1:57:1,56:1:36:56:2012:-177.755,-13.5604,0	0/1:121:63,58:63:2268:58:2074:-150.506,0,-167.957	1/1:99:2,97:2:72:97:3480:-306.574,-22.9652,0	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	1/1:58:0,58:0:0:58:2072:-186.681,-17.4597,0	1/1:99:0,99:0:0:99:3539:-318.718,-29.802,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:88:1,87:1:36:87:3120:-277.428,-22.8924,0	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	1/1:170:0,170:0:0:170:6102:-549.27,-51.1751,0	1/1:152:0,152:0:0:152:5448:-490.02,-45.7566,0	1/1:114:0,114:0:0:114:4056:-365.224,-34.3174,0	1/1:135:0,135:0:0:135:4786:-430.898,-40.6391,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:86:1,85:1:36:85:3041:-270.32,-22.2903,0	0/1:116:47,69:47:1680:69:2452:-186.016,0,-116.568	0/1:174:96,78:96:3432:78:2784:-198.422,0,-256.715	1/1:111:0,111:0:0:111:3952:-355.874,-33.4143,0	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:100:0,100:0:0:100:3588:-323.126,-30.103,0	0/1:128:61,67:61:2173:67:2393:-177.095,0,-157.303	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:75:35,40:35:1260:40:1420:-105.52,0,-91.1282	0/1:51:29,22:29:1040:22:788:-55.8923,0,-78.5618	0/1:38:18,20:18:644:20:716:-53.3286,0,-46.8515	0/1:69:31,38:31:1112:38:1364:-102.29,0,-79.6203	0/1:68:47,21:47:1672:21:752:-47.5362,0,-130.297	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:129:0,129:0:0:129:4607:-414.795,-38.8329,0
chr10	4001174	.	G	A	68224.7	PASS	AB=0.360535;ABP=1330.08;AC=106;AF=0.56383;AN=188;AO=3457;CIGAR=1X;DP=12290;DPB=12290;DPRA=132.14;EPP=1214.89;EPPR=19138;GTI=27;LEN=1;MEANALT=1.01075;MQM=59.9783;MQMR=59.9862;NS=94;NUMALT=1;ODDS=2.31214;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122975;QR=312207;RO=8832;RPL=0;RPP=7509.79;RPPR=19172.8;RPR=3457;RUN=1;SAF=2423;SAP=1214.89;SAR=1034;SRF=4;SRP=19146.7;SRR=8828;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:744:-67.2843,-6.32163,0	0/1:22:3,19:3:108:19:664:-53.4618,0,-3.45251	0/1:12:2,10:2:68:10:360:-29.1319,0,-2.84535	0/1:248:158,90:158:5550:90:3197:-213.298,0,-424.976	0/1:69:32,37:32:1140:37:1328:-99.0405,0,-82.1381	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:181:119,62:119:4192:62:2206:-144.318,0,-322.979	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:42:1,41:1:36:41:1468:-128.818,-9.04499,0	0/1:141:89,52:89:3127:52:1844:-123.792,0,-239.212	0/1:331:248,83:248:8773:83:2881:-159.885,0,-689.926	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:61:40,21:40:1420:21:752:-49.6434,0,-109.735	0/1:44:29,15:29:1036:15:536:-35.3295,0,-80.3086	0/1:48:27,21:27:964:21:733:-51.8402,0,-72.6274	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:235:174,61:174:6106:61:2126:-120.864,0,-478.903	0/1:185:114,71:114:4052:71:2528:-172.082,0,-309.18	0/1:92:81,11:81:2845:11:396:-8.28799,0,-228.592	0/1:31:21,10:21:730:10:360:-23.4124,0,-56.6875	0/1:89:60,29:60:2132:29:1021:-65.4086,0,-165.357	0/1:76:43,33:43:1532:33:1169:-82.637,0,-115.295	0/1:274:223,51:223:7809:51:1828:-82.3187,0,-620.367	0/1:248:155,93:155:5508:93:3332:-225.442,0,-421.196	0/1:64:10,54:10:360:54:1925:-154.26,0,-13.4784	0/1:335:221,114:221:7783:114:4041:-263.032,0,-599.665	0/1:166:132,34:132:4712:34:1189:-57.342,0,-373.78	0/1:85:64,21:64:2232:21:737:-41.0631,0,-175.553	0/0:379:378,1:378:13480:1:32:0,-110.891,-1209.8	0/0:444:437,7:437:15508:7:248:0,-110.993,-1372.29	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:201:138,63:138:4860:63:2255:-142.705,0,-377.05	0/1:200:148,52:148:5243:52:1837:-105.403,0,-411.807	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/0:256:252,4:252:8916:4:144:0,-63.7501,-789.125	0/1:151:104,47:104:3688:47:1676:-105.672,0,-286.671	0/1:161:123,38:123:4368:38:1352:-73.5145,0,-344.832	0/1:136:77,59:77:2740:59:2089:-147.338,0,-205.904	0/1:156:29,127:29:1012:127:4548:-362.52,0,-44.4278	0/1:66:41,25:41:1463:25:896:-61.0924,0,-112.097	0/1:95:45,50:45:1595:50:1749:-129.092,0,-115.242	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:156:94,62:94:3309:62:2203:-151.574,0,-251.068	0/1:103:66,37:66:2307:37:1328:-88.8161,0,-176.883	0/0:125:114,11:114:4005:11:396:0,-1.646,-324.66	0/1:204:116,88:116:4064:88:3121:-219.707,0,-304.54	0/0:822:818,4:818:28936:4:144:0,-234.133,-2590.11	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:41:35,6:35:1219:6:203:-6.25757,0,-97.6676	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:96:79,17:79:2800:17:608:-26.1531,0,-223.343	0/1:37:17,20:17:600:20:703:-52.4554,0,-43.1911	0/0:461:460,1:460:16282:1:36:0,-135.177,-1461.48	0/0:329:327,2:327:11591:2:72:0,-92.2021,-1036.17	0/1:88:50,38:50:1776:38:1364:-96.3425,0,-133.632	0/1:207:77,130:77:2695:130:4616:-353.293,0,-180.482	0/0:284:281,3:281:9943:3:108:0,-75.4173,-884.746	0/1:107:57,50:57:2028:50:1769:-127.281,0,-150.583	0/1:163:141,22:141:4983:22:788:-22.1769,0,-399.555	0/1:62:37,25:37:1320:25:896:-62.2965,0,-100.438	0/1:73:63,10:63:2170:10:360:-10.7691,0,-173.587	0/1:147:95,52:95:3318:52:1842:-121.807,0,-254.59	0/1:136:121,15:121:4266:15:532:-7.27301,0,-343.136	0/0:165:161,4:161:5736:4:144:0,-36.3563,-503.047	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:93:55,38:55:1899:38:1364:-95.0649,0,-143.187	0/0:580:579,1:579:20422:1:36:0,-170.999,-1833.92	0/1:19:2,17:2:72:17:608:-49.3325,0,-1.11715	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:114:67,47:67:2388:47:1676:-116.81,0,-180.86	0/1:80:66,14:66:2327:14:504:-21.6157,0,-185.608	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:78:58,20:58:2068:20:697:-39.5703,0,-162.911	1/1:24:0,24:0:0:24:841:-76.0064,-7.22472,0	0/1:202:109,93:109:3851:93:3321:-238.299,0,-285.979	0/1:118:71,47:71:2524:47:1677:-115.694,0,-191.846	0/1:47:28,19:28:967:19:684:-47.7419,0,-73.1894	0/1:50:32,18:32:1127:18:648:-43.6004,0,-86.6859	0/1:232:68,164:68:2386:164:5861:-457.604,0,-145.156	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:61:0,61:0:0:61:2169:-195.476,-18.3628,0	1/1:57:1,56:1:36:56:2004:-177.035,-13.5604,0	0/1:333:264,68:264:9344:68:2428:-118.474,0,-740.639	0/1:403:316,87:316:11232:87:3079:-156.024,0,-889.463	0/1:162:43,119:43:1494:119:4194:-328.875,0,-85.9823	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.6223	0/1:85:42,43:42:1490:43:1540:-113.306,0,-108.805
chr10	4001176	.	G	C	256888	PASS	AB=0.636149;ABP=1708.88;AC=109;AF=0.579787;AN=188;AO=12911;CIGAR=1X;DP=16832;DPB=16832;DPRA=0;EPP=28012.8;EPPR=472.649;GTI=12;LEN=1;MEANALT=1.12766;MQM=59.993;MQMR=59.9882;NS=94;NUMALT=1;ODDS=1.008;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=457197;QR=138454;RO=3905;RPL=1;RPP=28030.2;RPPR=8482.61;RPR=12910;RUN=1;SAF=2;SAP=28021.5;SAR=12909;SRF=2412;SRP=472.649;SRR=1493;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:32,26:32:1132:26:915:-65.2058,0,-84.7288	0/1:157:18,139:18:640:139:4922:-395.871,0,-10.6676	0/1:96:9,86:9:324:86:3072:-247.751,0,-0.548177	0/1:254:95,159:95:3357:159:5589:-426.682,0,-225.887	0/1:70:38,32:38:1347:32:1140:-81.8371,0,-100.457	0/1:61:35,26:35:1224:26:932:-65.836,0,-92.0981	0/1:187:67,120:67:2376:120:4256:-326.928,0,-157.803	0/1:263:76,187:76:2651:187:6633:-517.884,0,-159.663	0/1:113:78,35:78:2792:35:1235:-77.4371,0,-217.504	0/1:140:51,89:51:1813:89:3151:-241.673,0,-121.305	0/1:328:83,244:83:2927:244:8632:-678.088,0,-164.868	0/1:141:102,39:102:3546:39:1388:-82.7737,0,-276.906	0/1:65:28,37:28:1008:37:1328:-100.255,0,-71.4694	0/1:60:21,39:21:756:39:1379:-106.346,0,-50.3054	0/1:43:14,29:14:504:29:1027:-79.7979,0,-32.7538	0/1:50:23,27:23:828:27:940:-69.8593,0,-59.7926	0/1:66:26,40:26:904:40:1407:-107.058,0,-61.8039	0/1:57:17,39:17:604:39:1392:-108.362,0,-37.4734	0/1:208:73,135:73:2608:135:4754:-365.408,0,-172.354	0/1:225:59,166:59:2091:166:5872:-460.863,0,-120.728	0/1:182:74,108:74:2621:108:3822:-289.39,0,-181.349	0/1:85:11,74:11:396:74:2599:-208.57,0,-10.3952	0/1:32:11,21:11:396:21:744:-57.6514,0,-26.3498	0/1:93:30,63:30:1068:63:2205:-170.719,0,-68.4363	0/1:78:34,44:34:1195:44:1536:-115.049,0,-84.3742	0/1:267:48,219:48:1709:219:7761:-618.152,0,-73.7188	0/1:247:93,154:93:3309:154:5484:-419.334,0,-223.674	0/1:69:58,11:58:2080:11:380:-13.7609,0,-166.699	0/1:332:114,218:114:4018:218:7754:-597.956,0,-261.867	0/1:160:33,127:33:1171:127:4490:-356.106,0,-57.5319	0/1:83:23,60:23:828:60:2128:-166.803,0,-49.8586	1/1:387:1,385:1:36:385:13716:-1230.63,-112.959,0	1/1:451:9,442:9:297:442:15644:-1380.14,-108.714,0	1/1:471:1,464:1:36:464:16424:-1474.25,-136.741,0	1/1:606:3,603:3:108:603:21398:-1915.19,-172.349,0	1/1:328:3,325:3:108:325:11519:-1026.52,-88.6627,0	0/1:198:62,136:62:2224:136:4796:-372.198,0,-140.82	0/1:202:53,149:53:1879:149:5250:-411.835,0,-108.58	0/1:356:91,265:91:3251:265:9395:-738.354,0,-185.644	1/1:246:4,242:4:140:242:8532:-754.946,-61.1088,0	0/1:153:50,103:50:1738:103:3631:-280.939,0,-110.643	0/1:161:34,127:34:1207:127:4493:-356.077,0,-60.4694	0/1:136:61,75:61:2162:75:2647:-197.538,0,-153.906	0/1:159:129,30:129:4545:30:1067:-48.4774,0,-361.356	0/1:67:25,42:25:896:42:1484:-113.685,0,-60.7913	0/1:93:52,41:52:1828:41:1443:-102.169,0,-136.802	0/1:70:30,40:30:1072:40:1419:-106.935,0,-75.7204	0/1:151:60,91:60:2100:91:3226:-245.108,0,-143.812	0/1:101:38,63:38:1355:63:2244:-171.82,0,-91.8457	1/1:125:11,114:11:392:114:4044:-328.529,-2.00869,0	0/1:206:88,118:88:3128:118:4206:-316.709,0,-219.736	1/1:815:5,809:5:180:809:28749:-2570.03,-228.846,0	0/1:160:61,99:61:2155:99:3504:-267.409,0,-146.05	0/1:40:6,34:6:212:34:1213:-97.434,0,-7.37925	1/1:418:4,413:4:140:413:14664:-1306.57,-112.943,0	0/1:94:17,77:17:593:77:2743:-218.816,0,-25.3979	0/1:38:21,17:21:735:17:595:-42.4375,0,-55.0323	1/1:464:1,463:1:36:463:16395:-1471.64,-136.08,0	1/1:320:2,318:2:72:318:11279:-1008.16,-89.4929,0	0/1:87:38,49:38:1353:49:1721:-128.983,0,-95.8788	0/1:211:133,78:133:4744:78:2748:-184.045,0,-363.603	1/1:282:3,279:3:108:279:9854:-876.742,-74.8153,0	0/1:110:54,56:54:1910:56:1987:-145.99,0,-139.063	0/1:165:22,143:22:788:143:5041:-404.173,0,-21.5748	0/1:63:22,41:22:784:41:1460:-112.731,0,-51.919	0/1:71:9,62:9:324:62:2207:-177.522,0,-8.13272	0/1:146:51,95:51:1815:95:3336:-256.507,0,-119.68	0/1:140:17,123:17:608:123:4339:-348.5,0,-12.9078	1/1:169:4,165:4:144:165:5815:-510.159,-37.5605,0	0/1:105:20,85:20:720:85:3022:-240.603,0,-33.5206	0/1:91:37,54:37:1332:54:1881:-142.173,0,-92.7887	1/1:585:1,583:1:36:583:20537:-1844.28,-172.543,0	0/1:132:16,115:16:576:115:4016:-321.84,0,-12.3802	0/1:52:6,46:6:216:46:1630:-131.334,0,-4.13695	0/1:110:47,63:47:1677:63:2228:-167.669,0,-118.102	0/1:79:13,66:13:468:66:2344:-187.439,0,-18.6783	0/1:123:23,100:23:828:100:3547:-282.411,0,-37.8174	0/1:93:21,72:21:752:72:2555:-202.205,0,-40.0105	1/1:570:4,566:4:144:566:20106:-1795.75,-158.273,0	0/1:79:20,59:20:705:59:2089:-164.497,0,-39.9914	0/1:94:52,41:52:1839:41:1451:-102.53,0,-137.434	0/1:201:92,109:92:3296:109:3878:-288.709,0,-236.352	0/1:117:45,71:45:1620:71:2523:-192.151,0,-110.918	0/1:48:20,28:20:720:28:1004:-76.2264,0,-50.6793	0/1:49:17,32:17:612:32:1148:-88.8794,0,-40.663	0/1:236:172,64:172:6115:64:2270:-133.519,0,-478.982	0/1:44:14,30:14:500:30:1047:-81.2939,0,-32.0909	0/1:152:111,41:111:3905:41:1445:-84.5873,0,-305.889	0/1:124:91,33:91:3211:33:1163:-67.6484,0,-251.885	0/1:347:72,275:72:2515:275:9753:-773.272,0,-122.144	0/1:410:90,320:90:3177:320:11303:-893.748,0,-162.727	0/1:160:117,43:117:4092:43:1536:-90.3683,0,-320.303	0/1:14:12,2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chr10	4027562	.	C	T	29542.7	PASS	AB=0.445992;ABP=106.683;AC=48;AF=0.258065;AN=186;AO=1834;CIGAR=1X;DP=7109;DPB=7109;DPRA=1.4171;EPP=3985.49;EPPR=11455.4;GTI=1;LEN=1;MEANALT=1.01818;MQM=60;MQMR=59.9981;NS=93;NUMALT=1;ODDS=2.98799;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65757;QR=188587;RO=5274;RPL=1834;RPP=3985.49;RPPR=11455.4;RPR=0;RUN=1;SAF=0;SAP=3985.49;SAR=1834;SRF=0;SRP=11455.4;SRR=5274;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:83:37,46:37:1328:46:1656:-124.343,0,-94.8367	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:131:131,0:131:4685:0:0:0,-39.4349,-421.809	0/1:142:86,56:86:3084:56:2012:-138.607,0,-235.041	0/1:49:30,19:30:1076:19:684:-47.1399,0,-82.4024	0/1:41:26,15:26:928:15:540:-36.5943,0,-71.496	0/1:87:46,41:46:1648:41:1474:-106.767,0,-122.419	0/1:130:77,53:77:2733:53:1900:-132.144,0,-207.078	0/1:105:59,46:59:2101:46:1652:-117.36,0,-157.75	0/1:51:25,26:25:885:26:932:-68.8463,0,-64.614	0/1:25:7,18:7:248:18:640:-50.4036,0,-15.1384	0/1:100:60,40:60:2140:40:1431:-98.9838,0,-162.765	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:108:59,49:59:2120:49:1764:-126.533,0,-158.557	0/1:125:73,52:73:2612:52:1866:-130.591,0,-197.699	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/0:72:70,2:70:2467:2:72:0,-14.8374,-215.443	0/0:54:53,1:53:1881:1:36:0,-12.6573,-165.968	0/1:103:57,46:57:2029:46:1641:-116.971,0,-151.875	0/0:231:231,0:231:8284:0:0:0,-69.5379,-745.567	0/1:203:104,99:104:3709:99:3544:-258.06,0,-272.902	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/1:201:129,72:129:4624:72:2586:-172.481,0,-355.816	0/1:125:82,43:82:2933:43:1529:-100.272,0,-226.574	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:6,2:6:201:2:72:-4.42848,0,-16.0088	0/0:159:158,1:158:5665:1:36:0,-44.2655,-506.368	0/1:119:61,58:61:2184:58:2080:-151.648,0,-161.003	0/1:36:20,16:20:716:16:576:-41.3379,0,-53.9306	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:102:66,36:66:2341:36:1296:-86.2389,0,-180.243	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	0/1:156:74,82:74:2637:82:2936:-217.514,0,-190.615	0/1:41:25,16:25:896:16:576:-39.8328,0,-68.6181	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:167:109,58:109:3904:58:2088:-137.918,0,-301.281	0/0:87:87,0:87:3101:0:0:0,-26.1896,-279.316	0/1:166:98,68:98:3516:68:2440:-169.884,0,-266.678	0/1:84:43,41:43:1513:41:1464:-106.77,0,-111.175	0/0:84:83,1:83:2984:1:36:0,-21.6882,-265.193	0/1:121:65,56:65:2324:56:2001:-143.937,0,-172.996	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:87:43,44:43:1544:44:1578:-116.122,0,-113.063	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:136:135,1:135:4820:1:36:0,-37.3418,-430.358	0/1:63:33,30:33:1188:30:1072:-77.8276,0,-88.2628	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:96:50,46:50:1792:46:1656:-120.43,0,-132.664	0/1:78:39,39:39:1404:39:1404:-103.179,0,-103.179	.:.:.:.:.:.:.:.	0/1:136:82,54:82:2920:54:1940:-133.936,0,-222.096	0/0:122:122,0:122:4337:0:0:0,-36.7257,-390.507	0/1:47:20,27:20:708:27:968:-73.289,0,-49.8972	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:133:78,54:78:2800:54:1944:-135.14,0,-212.144	0/0:124:122,2:122:4380:2:72:0,-30.491,-387.536	0/1:20:18,2:18:648:2:72:-0.816123,0,-52.6313	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:161:161,0:161:5760:0:0:0,-48.4658,-518.508	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.367	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.671	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:114:114,0:114:4068:0:0:0,-34.3174,-366.308	0/0:58:57,1:57:2052:1:36:0,-13.8615,-181.353	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:113:63,50:63:2245:50:1777:-126.195,0,-168.295	0/1:143:78,65:78:2780:65:2309:-165.022,0,-207.394	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:121:64,57:64:2287:57:2052:-148.527,0,-169.666	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:73:33,40:33:1180:40:1436:-107.562,0,-84.5329	0/1:67:29,38:29:1044:38:1368:-103.252,0,-74.1058	0/1:39:18,21:18:639:21:737:-54.9105,0,-46.0981	0/1:57:23,34:23:824:34:1224:-93.3083,0,-57.3246	0/1:65:26,39:26:936:39:1400:-106.732,0,-64.9925	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605
chr10	4067143	.	A	G	298473	PASS	AB=0.529344;ABP=61.5051;AC=140;AF=0.744681;AN=188;AO=11049;CIGAR=1X;DP=14743;DPB=14743;DPRA=0;EPP=162.554;EPPR=533.423;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9829;MQMR=59.9889;NS=94;NUMALT=1;ODDS=4.02587;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=390024;QR=131801;RO=3687;RPL=10759;RPP=21542.8;RPPR=7312.83;RPR=290;RUN=1;SAF=4784;SAP=434.074;SAR=6265;SRF=1287;SRP=732.588;SRR=2400;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:45,33:45:1579:33:1146:-79.9639,0,-118.917	1/1:121:0,121:0:0:121:4268:-384.302,-36.4246,0	1/1:254:0,254:0:0:254:8996:-809.613,-76.4616,0	0/1:341:166,175:166:5934:175:6169:-452.664,0,-431.517	0/1:133:72,61:72:2561:61:2176:-156.07,0,-190.702	0/1:95:49,46:49:1756:46:1635:-118.837,0,-129.726	0/1:131:44,86:44:1567:86:3024:-232.898,0,-101.827	0/1:274:146,128:146:5207:128:4509:-323.499,0,-386.288	0/1:292:154,138:154:5505:138:4912:-354.331,0,-407.675	0/1:122:46,76:46:1643:76:2674:-204.181,0,-111.403	0/1:87:37,50:37:1328:50:1714:-128.331,0,-93.6326	0/1:200:95,105:95:3404:105:3679:-271.109,0,-246.368	1/1:153:2,151:2:72:151:5314:-471.561,-39.2209,0	1/1:162:0,162:0:0:162:5645:-508.176,-48.7669,0	1/1:95:0,95:0:0:95:3359:-302.529,-28.5979,0	1/1:123:0,123:0:0:123:4335:-390.269,-37.0267,0	1/1:104:0,104:0:0:104:3669:-330.414,-31.3071,0	1/1:66:0,66:0:0:66:2305:-207.711,-19.868,0	0/1:64:35,29:35:1260:29:1036:-74.288,0,-94.4396	0/1:158:55,103:55:1963:103:3632:-279.523,0,-129.382	0/1:291:137,154:137:4920:154:5399:-398.452,0,-355.349	1/1:168:0,168:0:0:168:5902:-531.3,-50.573,0	1/1:182:0,182:0:0:182:6435:-579.245,-54.7875,0	1/1:76:1,75:1:36:75:2667:-236.678,-19.28,0	0/1:123:67,56:67:2388:56:1978:-141.267,0,-178.151	1/1:451:3,448:3:108:448:15768:-1408.5,-125.689,0	0/1:470:244,226:244:8737:226:7980:-576.433,0,-644.834	0/1:52:19,33:19:660:33:1171:-90.0431,0,-44.067	0/1:434:234,200:234:8370:200:7021:-501.295,0,-622.658	0/1:225:100,125:100:3550:125:4422:-330.423,0,-251.973	1/1:215:1,213:1:36:213:7530:-674.191,-61.1071,0	1/1:17:0,17:0:0:17:599:-54.2381,-5.11751,0	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	1/1:13:0,13:0:0:13:441:-40.0127,-3.91339,0	1/1:11:0,11:0:0:11:383:-34.8032,-3.31133,0	0/1:35:23,12:23:828:12:428:-28.3228,0,-64.3081	1/1:343:2,341:2:72:341:11939:-1067.55,-96.4166,0	0/1:129:57,72:57:2048:72:2546:-190.555,0,-145.759	0/1:101:42,58:42:1504:58:2037:-153.135,0,-105.192	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:287:141,145:141:5024:145:5131:-375.481,0,-365.852	0/1:63:31,32:31:1112:32:1127:-82.7726,0,-81.4265	0/1:259:128,131:128:4575:131:4560:-332.608,0,-333.949	0/1:90:36,54:36:1270:54:1891:-143.372,0,-87.5086	1/1:121:1,120:1:36:120:4253:-379.353,-32.8264,0	0/1:218:93,124:93:3327:124:4387:-329.324,0,-233.964	1/1:222:0,222:0:0:222:7887:-709.864,-66.8287,0	0/1:247:114,133:114:4087:133:4710:-349.708,0,-293.659	0/1:104:39,65:39:1396:65:2283:-174.423,0,-94.632	1/1:248:0,248:0:0:248:8771:-789.389,-74.6554,0	0/1:157:78,79:78:2788:79:2789:-203.989,0,-203.899	0/1:8:2,6:2:72:6:207:-16.5587,0,-4.42848	0/1:164:72,92:72:2579:92:3275:-245.602,0,-182.99	1/1:143:0,143:0:0:143:5020:-451.954,-43.0473,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:287:0,287:0:0:287:10167:-914.972,-86.3956,0	0/1:49:10,39:10:360:39:1368:-108.666,0,-17.9938	1/1:17:0,17:0:0:17:599:-54.2381,-5.11751,0	0/1:27:14,13:14:496:13:459:-33.5163,0,-36.8465	0/1:234:134,100:134:4791:100:3558:-249.988,0,-360.905	0/1:107:33,74:33:1180:74:2611:-203.029,0,-74.2978	0/1:24:10,14:10:351:14:500:-38.1115,0,-24.702	0/1:318:159,159:159:5712:159:5596:-408.044,0,-418.465	1/1:293:0,293:0:0:293:10327:-929.37,-88.2018,0	0/1:160:65,95:65:2324:95:3358:-254.274,0,-161.255	1/1:185:0,185:0:0:185:6587:-592.914,-55.6906,0	0/1:176:75,101:75:2688:101:3579:-269.337,0,-189.183	1/1:258:0,258:0:0:258:9087:-817.819,-77.6657,0	1/1:89:0,89:0:0:89:3138:-282.645,-26.7917,0	1/1:95:0,95:0:0:95:3360:-302.62,-28.5979,0	1/1:85:0,85:0:0:85:2989:-269.244,-25.5876,0	1/1:27:0,27:0:0:27:956:-86.3557,-8.12781,0	1/1:137:0,137:0:0:137:4839:-435.67,-41.2411,0	1/1:162:0,162:0:0:162:5743:-516.993,-48.7669,0	1/1:349:0,349:0:0:349:12369:-1113.06,-105.059,0	1/1:299:0,299:0:0:299:10601:-954.01,-90.008,0	1/1:191:0,191:0:0:191:6707:-603.718,-57.4967,0	1/1:169:1,168:1:36:168:6008:-537.228,-47.2758,0	1/1:29:0,29:0:0:29:1014:-91.57,-8.72987,0	1/1:157:0,157:0:0:157:5561:-500.617,-47.2617,0	0/1:191:101,90:101:3600:90:3212:-231.807,0,-266.708	0/1:272:94,177:94:3367:177:6288:-484.078,0,-221.306	1/1:96:0,96:0:0:96:3351:-301.808,-28.8989,0	1/1:162:0,162:0:0:162:5697:-512.854,-48.7669,0	1/1:114:0,113:0:0:113:4023:-361.898,-34.0164,0	0/1:147:54,93:54:1940:93:3271:-250.358,0,-130.625	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:127:53,74:53:1896:74:2616:-197.457,0,-132.687	0/1:142:67,75:67:2380:75:2628:-194.019,0,-171.71	0/1:89:44,45:44:1580:45:1593:-116.867,0,-115.7	0/1:206:98,108:98:3511:108:3837:-283.515,0,-254.187	0/1:93:50,43:50:1783:43:1528:-109.817,0,-132.756	1/1:168:0,168:0:0:168:5995:-539.657,-50.573,0	1/1:221:0,221:0:0:221:7734:-696.106,-66.5276,0
chr10	4069182	.	C	T	67378.1	PASS	AB=0.544537;ABP=42.275;AC=138;AF=0.741935;AN=186;AO=3234;CIGAR=1X;DP=4310;DPB=4310;DPRA=0;EPP=7025.55;EPPR=9.5732;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9505;MQMR=59.9926;NS=93;NUMALT=1;ODDS=0.163018;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115739;QR=38295;RO=1075;RPL=3234;RPP=7025.55;RPPR=2285.52;RPR=0;RUN=1;SAF=3234;SAP=7025.55;SAR=0;SRF=560;SRP=7.10075;SRR=515;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:7,21:7:248:21:748:-59.2159,0,-14.2354	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:89:0,89:0:0:89:3184:-286.781,-26.7917,0	0/1:71:23,48:23:824:48:1696:-131.547,0,-53.1102	0/1:30:12,18:12:428:18:640:-48.8984,0,-29.8279	0/1:19:10,9:10:352:9:324:-23.7863,0,-26.2986	0/1:42:19,23:19:680:23:828:-62.2009,0,-48.8859	0/1:69:32,36:32:1148:36:1292:-95.7846,0,-82.8387	0/1:51:20,31:20:711:31:1116:-85.3992,0,-48.9631	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	0/1:56:43,13:43:1540:13:468:-25.602,0,-122.035	0/1:60:43,17:43:1540:17:603:-36.5377,0,-120.831	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:29:1,28:1:36:28:1004:-87.0776,-5.1316,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:45:36,9:36:1292:9:320:-15.596,0,-103.037	0/1:77:29,48:29:1032:48:1716:-131.546,0,-70.0142	0/1:63:21,42:21:752:42:1508:-117.049,0,-49.0414	1/1:58:1,57:1:21:57:2035:-181.299,-15.3598,0	1/1:73:0,73:0:0:73:2601:-234.337,-21.9752,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:31:9,22:9:320:22:783:-61.461,0,-19.8104	1/1:149:0,149:0:0:149:5333:-479.833,-44.8535,0	0/1:117:31,86:31:1099:86:3092:-243.286,0,-63.9989	0/1:29:22,7:22:783:7:252:-14.2991,0,-62.0631	0/1:91:26,65:26:928:65:2340:-183.451,0,-56.4445	0/1:35:15,20:15:525:20:720:-54.5927,0,-37.042	1/1:71:0,71:0:0:71:2548:-229.565,-21.3731,0	1/1:7:0,7:0:0:7:252:-23.0266,-2.10721,0	1/1:10:1,9:1:27:9:324:-26.8061,-0.310517,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:40:6,34:6:212:34:1205:-96.7127,0,-7.3836	0/1:52:43,9:43:1509:9:324:-13.8523,0,-120.448	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:43:23,20:23:828:20:708:-51.1013,0,-61.8998	0/1:29:19,10:19:676:10:360:-24.0144,0,-52.4381	0/1:68:17,51:17:604:51:1824:-143.96,0,-34.2206	0/1:55:48,7:48:1702:7:252:-6.47231,0,-136.906	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:38:9,29:9:320:29:1040:-82.4752,0,-17.7032	1/1:45:0,45:0:0:45:1612:-145.362,-13.5464,0	0/1:61:20,41:20:707:41:1468:-114.053,0,-45.5917	0/1:53:9,44:9:324:44:1576:-126.07,0,-13.5513	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:61:22,39:22:779:39:1400:-107.936,0,-52.0683	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:74:20,54:20:698:54:1936:-152.24,0,-40.8652	1/1:27:0,27:0:0:27:933:-84.2778,-8.12781,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:25:7,18:7:243:18:629:-49.408,0,-14.6817	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:2,3:2:59:3:108:-8.55181,0,-4.09899	0/1:43:14,29:14:500:29:1044:-81.3305,0,-32.3919	0/1:80:51,29:51:1824:29:1044:-70.1924,0,-140.359	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:43:9,34:9:316:34:1211:-96.3512,0,-15.8346	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:33:8,25:8:284:25:885:-70.0219,0,-15.9694	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:90:26,64:26:932:64:2300:-180.168,0,-57.1062	1/1:98:3,95:3:108:95:3389:-295.149,-19.4258,0	1/1:25:1,24:1:36:24:864:-74.4843,-3.92748,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:36:0,36:0:0:36:1289:-116.314,-10.8371,0	1/1:28:0,28:0:0:28:1003:-90.5856,-8.42884,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	1/1:83:0,83:0:0:83:2954:-266.093,-24.9855,0	1/1:103:0,103:0:0:103:3700:-333.198,-31.0061,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:27:0,27:0:0:27:972:-87.7964,-8.12781,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	0/1:45:11,34:11:396:34:1205:-95.2075,0,-22.4364	0/1:86:36,50:36:1292:50:1779:-134.504,0,-90.6952	1/1:50:0,50:0:0:50:1781:-160.571,-15.0515,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:18:0,18:0:0:18:647:-58.5616,-5.41854,0	0/1:85:69,16:69:2468:16:576:-26.5874,0,-196.787	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:53:33,20:33:1184:20:716:-48.8131,0,-90.9137	0/1:63:42,21:42:1512:21:752:-49.0414,0,-117.41	0/0:34:31,3:31:1103:3:108:0,-0.15985,-89.5046	0/1:53:37,16:37:1323:16:568:-35.4973,0,-103.417	0/1:51:46,5:46:1638:5:180:-1.19954,0,-132.355	1/1:85:0,85:0:0:85:3029:-272.84,-25.5876,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0
chr10	4069189	.	G	A	66013.1	PASS	AB=0.541376;ABP=37.1524;AC=138;AF=0.741935;AN=186;AO=3215;CIGAR=1X;DP=4273;DPB=4273;DPRA=0;EPP=6984.29;EPPR=6.63079;GTI=2;LEN=1;MEANALT=1;MQM=59.9502;MQMR=60;NS=93;NUMALT=1;ODDS=0.35652;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113928;QR=37449;RO=1058;RPL=3215;RPP=6984.29;RPPR=2300.43;RPR=0;RUN=1;SAF=3215;SAP=6984.29;SAR=0;SRF=550;SRP=6.63079;SRR=508;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:7,22:7:243:22:775:-61.3413,0,-13.4776	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:89:0,89:0:0:89:3180:-286.424,-26.7917,0	0/1:71:22,49:22:788:49:1748:-136.228,0,-49.8717	0/1:27:11,16:11:392:16:576:-44.0472,0,-27.4922	0/1:19:10,9:10:352:9:316:-23.0593,0,-26.2986	0/1:42:19,23:19:680:23:815:-61.0275,0,-48.8859	0/1:70:33,37:33:1162:37:1319:-97.9309,0,-83.8132	0/1:49:20,29:20:712:29:1040:-79.1639,0,-49.6562	0/1:23:10,13:10:356:13:460:-34.8117,0,-25.4576	0/1:56:43,13:43:1527:13:468:-25.602,0,-120.865	0/1:58:41,17:41:1443:17:596:-36.508,0,-112.705	1/1:32:0,32:0:0:32:1136:-102.549,-9.63296,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:28:1,27:1:36:27:963:-83.3877,-4.83057,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:15:0,15:0:0:15:531:-48.1219,-4.51545,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:43:34,9:34:1203:9:312:-15.4711,0,-95.6307	0/1:76:27,49:27:968:49:1760:-135.806,0,-64.5591	0/1:63:22,41:22:784:41:1454:-112.191,0,-51.919	1/1:56:0,56:0:0:56:1965:-177.101,-16.8577,0	1/1:72:0,72:0:0:72:2570:-231.549,-21.6742,0	1/1:39:0,39:0:0:39:1367:-123.328,-11.7402,0	0/1:29:8,21:8:288:21:748:-58.9154,0,-17.5375	1/1:149:0,149:0:0:149:5274:-474.77,-44.8535,0	0/1:116:32,84:32:1118:84:2932:-229.195,0,-66.0065	0/1:30:23,7:23:812:7:248:-13.6333,0,-64.37	0/1:93:27,66:27:950:66:2339:-182.76,0,-57.8176	0/1:35:15,20:15:527:20:712:-53.8706,0,-37.2241	1/1:71:0,71:0:0:71:2513:-226.421,-21.3731,0	1/1:7:0,7:0:0:7:252:-23.0266,-2.10721,0	0/1:10:1,9:1:36:9:316:-25.7686,0,-0.587975	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:83:0,83:0:0:83:2940:-264.836,-24.9855,0	0/1:41:6,35:6:216:35:1221:-97.8492,0,-7.44828	0/1:51:42,9:42:1477:9:324:-14.1533,0,-117.87	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:45:24,21:24:855:21:740:-53.377,0,-63.7238	0/1:30:20,10:20:712:10:356:-23.3503,0,-55.3758	0/1:66:17,49:17:612:49:1748:-137.726,0,-35.5455	0/1:52:45,7:45:1577:7:252:-7.3754,0,-126.565	1/1:23:0,23:0:0:23:803:-72.5892,-6.92369,0	0/1:39:10,29:10:352:29:1024:-80.7324,0,-20.278	1/1:47:0,47:0:0:47:1676:-151.124,-14.1484,0	0/1:60:19,41:19:676:41:1460:-113.634,0,-43.1062	0/1:51:9,42:9:316:42:1450:-115.415,0,-13.4263	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:61:21,40:21:744:40:1418:-109.554,0,-48.9215	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:73:19,54:19:672:54:1898:-149.122,0,-38.8316	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:62:0,62:0:0:62:2192:-197.546,-18.6639,0	0/1:24:7,17:7:248:17:604:-47.4659,0,-15.4395	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:4:1,3:1:36:3:104:-8.48048,0,-2.39415	0/1:45:15,30:15:511:30:1080:-83.9669,0,-32.7669	0/1:79:50,29:50:1776:29:1032:-69.4121,0,-136.342	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:42:9,33:9:320:33:1151:-91.252,0,-16.4991	1/1:77:0,77:0:0:77:2740:-246.844,-23.1793,0	0/1:31:8,23:8:288:23:820:-64.7863,0,-16.9355	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:86:26,60:26:928:60:2136:-166.62,0,-57.9497	1/1:95:3,92:3:108:92:3286:-285.884,-18.5227,0	1/1:25:1,24:1:36:24:860:-74.1236,-3.92748,0	1/1:32:0,32:0:0:32:1116:-100.745,-9.63296,0	1/1:38:0,38:0:0:38:1341:-120.988,-11.4391,0	1/1:28:0,28:0:0:28:995:-89.864,-8.42884,0	1/1:71:0,71:0:0:71:2482:-223.632,-21.3731,0	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	1/1:85:0,85:0:0:85:3020:-272.022,-25.5876,0	1/1:104:0,104:0:0:104:3692:-332.48,-31.3071,0	1/1:48:0,48:0:0:48:1692:-152.564,-14.4494,0	1/1:25:0,25:0:0:25:896:-80.9588,-7.52575,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:68:0,68:0:0:68:2393:-215.627,-20.47,0	0/1:46:12,34:12:424:34:1191:-93.6469,0,-24.649	0/1:86:35,51:35:1260:51:1812:-137.473,0,-87.8169	1/1:52:0,52:0:0:52:1841:-165.968,-15.6536,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:18:0,18:0:0:18:643:-58.2004,-5.41854,0	0/1:80:64,16:64:2251:16:564:-27.0079,0,-178.768	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:53:33,20:33:1150:20:699:-47.2779,0,-87.8499	0/1:63:42,21:42:1484:21:727:-46.7846,0,-114.89	0/1:33:30,3:30:1076:3:108:-0.14118,0,-87.2189	0/1:54:37,17:37:1307:17:600:-38.0736,0,-101.675	0/1:49:44,5:44:1552:5:165:-0.423133,0,-125.221	1/1:81:0,81:0:0:81:2877:-259.16,-24.3834,0	1/1:36:0,36:0:0:36:1258:-113.521,-10.8371,0
chr10	4070074	.	T	C	100893	PASS	AB=0.476564;ABP=23.0609;AC=137;AF=0.728723;AN=188;AO=4924;CIGAR=1X;DP=7135;DPB=7135;DPRA=25.5627;EPP=10695.3;EPPR=4795.45;GTI=3;LEN=1;MEANALT=1.04301;MQM=59.9783;MQMR=59.9905;NS=94;NUMALT=1;ODDS=1.20336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=176454;QR=79175;RO=2207;RPL=0;RPP=10695.3;RPPR=4795.45;RPR=4924;RUN=1;SAF=4924;SAP=10695.3;SAR=0;SRF=2207;SRP=4795.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:18,6:18:648:6:216:-12.5658,0,-51.4272	1/1:126:0,126:0:0:126:4502:-405.33,-37.9298,0	1/1:127:0,127:0:0:127:4552:-409.846,-38.2308,0	0/1:142:60,82:60:2152:82:2933:-221.456,0,-151.201	0/1:19:15,4:15:532:4:144:-7.59405,0,-42.4935	0/1:68:36,32:36:1284:32:1132:-81.7185,0,-95.3852	0/1:100:38,62:38:1368:62:2220:-169.957,0,-93.3178	0/1:135:81,54:81:2908:54:1940:-134.237,0,-221.316	0/1:122:72,50:72:2588:50:1796:-125.197,0,-196.443	0/1:105:62,43:62:2228:43:1540:-107.285,0,-169.176	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	0/1:52:27,25:27:972:25:892:-64.9461,0,-72.1443	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:51:0,51:0:0:51:1821:-164.17,-15.3525,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5241	0/1:154:82,72:82:2936:72:2584:-186.45,0,-218.087	0/1:154:80,74:80:2864:74:2644:-191.848,0,-211.639	1/1:101:0,101:0:0:101:3614:-325.466,-30.404,0	1/1:94:0,94:0:0:94:3360:-302.617,-28.2968,0	0/1:62:12,50:12:428:50:1796:-143.258,0,-20.1949	0/1:44:28,16:28:1008:16:572:-38.5681,0,-77.791	1/1:304:4,300:4:144:300:10741:-953.279,-78.1995,0	0/1:144:68,76:68:2444:76:2732:-202.774,0,-176.866	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/1:241:134,107:134:4811:107:3840:-273.247,0,-360.595	0/1:108:60,48:60:2148:48:1724:-122.934,0,-161.076	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:15:0,15:0:0:15:529:-47.9406,-4.51545,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:122:0,122:0:0:122:4364:-392.935,-36.7257,0	0/1:182:109,73:109:3912:73:2624:-181.619,0,-297.485	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:162:75,87:75:2688:87:3106:-230.063,0,-193.398	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:61:26,34:26:936:34:1220:-91.6852,0,-66.1378	0/1:38:21,17:21:752:17:612:-43.9743,0,-56.5671	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:99:51,48:51:1836:48:1724:-125.643,0,-135.719	1/1:75:0,75:0:0:75:2673:-240.811,-22.5773,0	0/1:150:81,69:81:2900:69:2484:-178.658,0,-216.081	0/1:126:72,54:72:2584:54:1934:-136.405,0,-194.879	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:127:62,65:62:2224:65:2324:-171.189,0,-162.193	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:111:56,54:56:2012:54:1920:-139.604,0,-147.88	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:33:0,33:0:0:33:1176:-105.717,-9.93399,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	0/1:34:19,15:19:680:15:540:-38.7015,0,-51.2941	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:110:44,65:44:1584:65:2332:-176.967,0,-109.679	0/1:84:40,44:40:1436:44:1564:-115.765,0,-104.251	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/1:196:120,76:120:4304:76:2736:-187.48,0,-328.534	1/1:209:0,209:0:0:209:7488:-673.962,-62.9153,0	0/1:112:55,57:55:1972:57:2048:-150.876,0,-144.039	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:163:85,78:85:3032:78:2800:-203.172,0,-224.043	1/1:96:3,93:3:108:93:3332:-290.022,-18.8237,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:70:0,70:0:0:70:2500:-225.253,-21.0721,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:76:0,76:0:0:76:2724:-245.402,-22.8783,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:121:0,121:0:0:121:4344:-391.134,-36.4246,0	1/1:116:0,115:0:0:115:4140:-372.421,-34.6185,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:90:0,90:0:0:90:3226:-290.562,-27.0927,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:92:54,38:54:1928:38:1368:-95.7261,0,-146.102	0/1:156:70,86:70:2516:86:3076:-230.108,0,-179.731	1/1:58:0,58:0:0:58:2072:-186.749,-17.4597,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	0/1:112:59,53:59:2116:53:1900:-137.563,0,-156.993	1/1:31:0,31:0:0:31:1107:-99.9408,-9.33193,0	0/1:55:31,24:31:1112:24:864:-61.5259,0,-83.8347	0/1:47:24,23:24:864:23:824:-60.3349,0,-63.9342	0/1:24:7,17:7:252:17:604:-47.4659,0,-15.8042	0/1:57:31,26:31:1116:26:928:-66.6795,0,-83.593	0/1:51:37,14:37:1324:14:504:-30.3456,0,-104.11	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0
chr10	4083251	.	A	G	103985	PASS	AB=0.448525;ABP=108.305;AC=137;AF=0.728723;AN=188;AO=5148;CIGAR=1X;DP=7683;DPB=7683;DPRA=82.6022;EPP=11181.8;EPPR=5488.15;GTI=7;LEN=1;MEANALT=1.09677;MQM=59.9946;MQMR=59.998;NS=94;NUMALT=1;ODDS=0.640258;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183488;QR=90523;RO=2526;RPL=0;RPP=11181.8;RPPR=5488.15;RPR=5148;RUN=1;SAF=5148;SAP=11181.8;SAR=0;SRF=2526;SRP=5488.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	1/1:105:0,105:0:0:105:3734:-336.259,-31.6082,0	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	0/1:202:110,92:110:3941:92:3261:-232.903,0,-294.072	0/1:45:22,23:22:788:23:828:-61.2978,0,-57.6984	0/1:49:31,18:31:1108:18:648:-43.9014,0,-85.2805	0/1:205:100,104:100:3581:104:3709:-272.39,0,-260.874	0/1:101:40,61:40:1436:61:2167:-164.89,0,-99.1336	0/1:60:37,23:37:1332:23:820:-56.0607,0,-102.121	0/1:55:38,17:38:1364:17:600:-37.7725,0,-106.504	0/1:71:40,31:40:1440:31:1112:-79.0182,0,-108.525	0/1:62:38,24:38:1364:24:864:-59.4105,0,-104.397	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	1/1:61:0,60:0:0:60:2144:-192.868,-18.0618,0	1/1:74:0,74:0:0:74:2664:-240.005,-22.2762,0	1/1:51:1,49:1:36:49:1760:-155.086,-11.8131,0	0/1:55:33,21:33:1180:21:752:-51.3909,0,-89.8927	0/1:191:102,88:102:3660:88:3149:-226.078,0,-272.047	0/1:165:67,98:67:2393:98:3482:-263.92,0,-165.955	1/1:129:0,129:0:0:129:4583:-412.633,-38.8329,0	1/1:49:1,48:1:36:48:1716:-151.127,-11.1522,0	0/1:70:7,63:7:252:63:2233:-180.031,0,-1.95686	0/1:86:51,35:51:1804:35:1229:-85.0233,0,-136.751	1/1:225:2,223:2:72:223:7967:-710.215,-60.895,0	0/1:104:70,34:70:2512:34:1216:-78.4394,0,-195.025	0/1:43:26,17:26:932:17:604:-41.7463,0,-71.2546	0/1:242:166,76:166:5968:76:2705:-170.844,0,-464.374	0/1:79:44,35:44:1572:35:1256:-89.5639,0,-117.99	1/1:93:0,93:0:0:93:3328:-299.738,-27.9958,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:18:0,18:0:0:18:618:-55.9382,-5.41854,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:183:0,183:0:0:183:6502:-585.267,-55.0885,0	0/1:243:134,109:134:4781:109:3889:-277.053,0,-357.296	0/1:78:33,45:33:1169:45:1604:-121.17,0,-82.0349	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:147:79,68:79:2840:68:2440:-175.604,0,-211.586	0/1:36:22,14:22:788:14:489:-33.5018,0,-60.4077	0/1:93:43,50:43:1525:50:1779:-132.397,0,-109.545	0/1:82:47,35:47:1692:35:1252:-88.3006,0,-127.882	1/1:66:1,65:1:36:65:2336:-206.901,-16.2697,0	0/1:92:60,32:60:2156:32:1125:-73.8613,0,-166.612	1/1:80:0,80:0:0:80:2856:-257.278,-24.0824,0	0/1:123:69,54:69:2480:54:1925:-136.498,0,-186.426	0/1:106:69,37:69:2472:37:1332:-88.2732,0,-190.825	1/1:100:1,99:1:36:99:3533:-314.582,-26.5047,0	0/1:113:69,44:69:2480:44:1557:-106.403,0,-189.437	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:126:74,52:74:2660:52:1849:-128.758,0,-201.716	1/1:51:0,51:0:0:51:1813:-163.45,-15.3525,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:111:0,111:0:0:111:3931:-353.981,-33.4143,0	0/1:38:21,17:21:748:17:593:-42.2556,0,-56.2062	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/1:55:28,27:28:1008:27:957:-69.8872,0,-74.4797	0/1:148:78,69:78:2804:69:2456:-176.684,0,-207.988	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:156:85,71:85:3037:71:2510:-179.189,0,-226.598	1/1:128:0,128:0:0:128:4573:-411.735,-38.5318,0	0/1:49:31,18:31:1097:18:640:-43.1788,0,-84.2875	1/1:69:0,69:0:0:69:2431:-219.041,-20.7711,0	0/1:147:92,55:92:3312:55:1964:-132.784,0,-254.046	1/1:90:0,90:0:0:90:3216:-289.663,-27.0927,0	0/1:28:4,24:4:140:24:826:-66.2228,0,-4.51574	1/1:51:0,51:0:0:51:1813:-163.45,-15.3525,0	1/1:72:0,72:0:0:72:2573:-231.818,-21.6742,0	1/1:18:1,17:1:36:17:608:-51.4537,-1.82027,0	1/1:120:0,120:0:0:120:4266:-384.118,-36.1236,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:99:0,99:0:0:99:3537:-318.538,-29.802,0	1/1:145:0,144:0:0:144:5113:-459.952,-43.3483,0	1/1:45:0,45:0:0:45:1586:-143.026,-13.5464,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:57:0,57:0:0:57:2012:-181.35,-17.1587,0	0/1:116:58,58:58:2088:58:2076:-152.191,0,-153.27	0/1:154:102,52:102:3657:52:1860:-121.321,0,-282.971	1/1:112:0,111:0:0:111:3931:-353.622,-33.4143,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:145:74,71:74:2660:71:2540:-185.202,0,-195.996	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:71:40,30:40:1432:30:1076:-75.7218,0,-107.747	0/1:81:44,37:44:1569:37:1324:-95.0787,0,-117.116	0/1:46:20,26:20:720:26:936:-70.7121,0,-51.2814	0/1:115:60,55:60:2141:55:1960:-142.057,0,-158.337	0/1:50:31,19:31:1112:19:684:-46.8388,0,-85.3398	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	1/1:88:0,88:0:0:88:3118:-280.845,-26.4906,0
chr10	4126100	.	A	T	128064	PASS	AB=0.451333;ABP=69.3769;AC=137;AF=0.728723;AN=188;AO=4770;CIGAR=1X;DP=6555;DPB=6555;DPRA=35.2312;EPP=5.11531;EPPR=3.24941;GTI=2;LEN=1;MEANALT=1.05376;MQM=59.9849;MQMR=59.9972;NS=94;NUMALT=1;ODDS=0.680329;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170011;QR=63458;RO=1780;RPL=1;RPP=10352.2;RPPR=3868.23;RPR=4769;RUN=1;SAF=2420;SAP=5.24095;SAR=2350;SRF=897;SRP=3.24941;SRR=883;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:21,19:21:752:19:680:-49.488,0,-55.9651	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:120:0,119:0:0:119:4231:-380.61,-35.8226,0	0/1:74:46,28:46:1648:28:995:-67.5878,0,-126.332	0/1:20:13,7:13:464:7:248:-16.6436,0,-36.0769	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:37:19,18:19:669:18:644:-47.1525,0,-49.3958	0/1:123:69,54:69:2476:54:1932:-137.13,0,-186.067	0/1:78:47,31:47:1688:31:1112:-76.911,0,-128.727	0/1:63:23,40:23:820:40:1423:-109.402,0,-55.1576	0/1:123:72,51:72:2534:51:1820:-127.055,0,-191.283	0/1:162:91,71:91:3236:71:2532:-179.363,0,-242.694	1/1:159:0,159:0:0:159:5688:-512.039,-47.8638,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:134:0,134:0:0:134:4760:-428.472,-40.338,0	1/1:51:2,49:2:72:49:1750:-150.946,-8.51581,0	1/1:124:1,123:1:36:123:4382:-390.956,-33.7294,0	1/1:127:0,127:0:0:127:4527:-407.591,-38.2308,0	0/1:74:34,40:34:1224:40:1436:-107.261,0,-88.1908	0/1:89:55,34:55:1968:34:1216:-82.9549,0,-150.603	0/1:71:42,29:42:1495:29:1036:-72.1808,0,-113.471	1/1:36:0,36:0:0:36:1283:-115.773,-10.8371,0	1/1:49:3,46:3:104:46:1639:-138.095,-5.04766,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:49:33,16:33:1188:16:560:-35.9783,0,-92.4781	1/1:131:0,131:0:0:131:4679:-421.272,-39.4349,0	0/1:95:53,42:53:1899:42:1495:-106.246,0,-142.589	0/1:47:35,12:35:1256:12:428:-24.7104,0,-99.1969	0/1:110:51,59:51:1820:59:2116:-157.595,0,-130.968	0/1:20:10,10:10:360:10:352:-25.9976,0,-26.7237	1/1:52:1,51:1:36:51:1811:-159.659,-12.0553,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:267:0,267:0:0:267:9547:-859.187,-80.375,0	0/1:28:21,6:21:739:6:201:-9.96717,0,-58.3832	0/1:100:53,47:53:1908:47:1688:-122.104,0,-141.895	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:44:34,10:34:1216:10:356:-19.1359,0,-96.5012	0/1:34:23,11:23:811:11:396:-25.7477,0,-63.0749	0/1:68:32,35:32:1129:35:1244:-91.7747,0,-81.4264	0/1:126:61,64:61:2176:64:2278:-167.279,0,-158.118	1/1:105:1,104:1:36:104:3672:-327.087,-28.0099,0	0/1:34:20,14:20:705:14:491:-34.2861,0,-53.5378	1/1:63:0,63:0:0:63:2227:-200.692,-18.9649,0	0/1:83:43,40:43:1493:40:1431:-104.101,0,-109.673	0/1:36:22,14:22:784:14:504:-34.861,0,-60.0468	1/1:78:0,78:0:0:78:2758:-248.462,-23.4803,0	0/1:61:31,30:31:1093:30:1072:-78.4296,0,-80.3148	0/1:4:2,2:2:72:2:63:-4.77903,0,-5.6326	0/1:67:31,36:31:1108:36:1275:-94.8833,0,-79.862	1/1:19:0,19:0:0:19:672:-60.8068,-5.71957,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:39:0,39:0:0:39:1390:-125.399,-11.7402,0	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:44:24,20:24:860:20:711:-51.0703,0,-64.4765	0/1:143:67,76:67:2400:76:2723:-202.266,0,-173.21	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:66:31,35:31:1107:35:1239:-91.9457,0,-80.0722	1/1:64:0,64:0:0:64:2287:-206.091,-19.2659,0	0/1:33:16,16:16:572:16:563:-41.0069,0,-41.8208	1/1:42:0,42:0:0:42:1490:-134.393,-12.6433,0	0/1:84:59,25:59:2120:25:888:-54.9525,0,-165.782	1/1:65:0,65:0:0:65:2292:-206.539,-19.567,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	1/1:148:0,148:0:0:148:5245:-472.171,-44.5524,0	1/1:20:0,20:0:0:20:694:-62.7804,-6.0206,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:64:1,63:1:36:63:2251:-199.254,-15.6676,0	1/1:46:1,45:1:36:45:1616:-142.132,-10.2491,0	1/1:81:0,81:0:0:81:2900:-261.236,-24.3834,0	1/1:74:0,74:0:0:74:2632:-237.128,-22.2762,0	1/1:85:0,85:0:0:85:3032:-273.111,-25.5876,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:32:2,30:2:72:30:1072:-89.9557,-2.79624,0	0/1:52:24,28:24:860:28:1000:-74.6618,0,-62.0683	0/1:82:35,47:35:1247:47:1682:-126.983,0,-87.8496	1/1:145:0,145:0:0:145:5179:-466.25,-43.6494,0	1/1:132:0,132:0:0:132:4724:-425.319,-39.736,0	1/1:146:0,146:0:0:146:5210:-469.039,-43.9504,0	0/1:213:94,119:94:3339:119:4227:-316.491,0,-236.606	1/1:55:0,55:0:0:55:1955:-176.225,-16.5567,0	0/1:92:49,43:49:1748:43:1536:-110.838,0,-129.909	0/1:112:58,54:58:2067:54:1923:-139.631,0,-152.585	0/1:69:53,16:53:1896:16:568:-30.6808,0,-150.147	0/1:85:59,26:59:2093:26:936:-58.9719,0,-163.051	0/1:120:77,43:77:2742:43:1527:-101.599,0,-210.898	1/1:52:0,52:0:0:52:1852:-166.96,-15.6536,0	1/1:252:0,252:0:0:252:8990:-809.081,-75.8596,0
chr10	4155415	.	A	G,T	353234	PASS	AB=0.465891,0.53267;ABP=87.2973,80.337;AC=139,49;AF=0.739362,0.260638;AN=188;AO=12185,4466;CIGAR=1X,1X;DP=16666;DPB=16666;DPRA=0,1.52415;EPP=26462.4,9700.81;EPPR=11.6962;GTI=0;LEN=1,1;MEANALT=1.71277,2.08065;MQM=59.8856,59.9536;MQMR=60;NS=94;NUMALT=2;ODDS=7.05433;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=429205,159743;QR=144;RO=4;RPL=12185,4466;RPP=26462.4,9700.81;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=26462.4,9700.81;SAR=12185,4466;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:57:0,22,35:0:0:22,35:788,1260:-167.433,-103.169,-96.5468,-64.6221,0,-54.0861	1/1:93:0,93,0:0:0:93,0:3300,0:-297.207,-27.9958,0,-297.207,-27.9958,-297.207	1/1:129:0,129,0:0:0:129,0:4600,0:-414.163,-38.8329,0,-414.163,-38.8329,-414.163	1/2:164:0,71,93:0:0:71,93:2484,3321:-473.087,-271.005,-249.632,-202.434,0,-174.438	1/2:75:0,32,43:0:0:32,43:1111,1525:-214.907,-124.597,-114.964,-90.6601,0,-77.7158	1/2:27:0,11,16:0:0:11,16:379,576:-78.1355,-47.3585,-44.0472,-31.1277,0,-26.3112	1/2:56:0,28,28:0:0:28,28:991,1004:-162.966,-82.247,-73.8182,-81.0747,0,-72.6458	1/2:122:0,62,60:0:0:62,60:2202,2128:-353.147,-173.723,-155.059,-179.779,0,-161.717	1/2:88:0,37,51:0:0:37,51:1315,1801:-254.176,-147.017,-135.879,-107.513,0,-92.1604	1/2:72:0,33,39:0:0:33,39:1152,1404:-208.617,-114.919,-104.985,-94.0521,0,-82.312	1/2:178:0,99,79:0:0:99,79:3465,2844:-514.303,-232.416,-202.614,-282.243,0,-258.461	1/2:42:0,26,16:0:0:26,16:915,568:-121.117,-46.6354,-38.8086,-74.8357,0,-70.0192	1/1:35:0,35,0:0:0:35,0:1229,0:-110.91,-10.5361,0,-110.91,-10.5361,-110.91	1/1:30:0,30,0:0:0:30,0:1064,0:-96.0717,-9.0309,0,-96.0717,-9.0309,-96.0717	1/1:36:0,36,0:0:0:36,0:1257,0:-113.43,-10.8371,0,-113.43,-10.8371,-113.43	1/1:43:0,43,0:0:0:43,0:1515,0:-136.641,-12.9443,0,-136.641,-12.9443,-136.641	1/1:34:0,34,0:0:0:34,0:1196,0:-107.945,-10.235,0,-107.945,-10.235,-107.945	1/1:21:0,20,1:0:0:20,1:691,36:-62.1512,-6.0206,0,-59.2131,-2.72336,-58.9121	1/2:62:0,34,28:0:0:34,28:1202,1004:-180.14,-82.247,-72.012,-98.2492,0,-89.8204	1/2:145:0,68,76:0:0:68,76:2408,2728:-418.676,-222.525,-202.055,-196.148,0,-173.27	1/2:159:0,90,69:0:0:90,69:3136,2476:-456.971,-202.322,-175.23,-255.003,0,-234.232	1/1:201:0,201,0:0:0:201,0:7078,0:-637.067,-60.507,0,-637.067,-60.507,-637.067	1/1:159:0,158,1:0:0:158,1:5587,36:-502.599,-47.5627,0,-499.662,-44.2655,-499.361	1/1:48:0,44,4:0:0:44,4:1542,144:-138.711,-13.2453,0,-126.96,-1.13582,-125.756	1/2:41:0,18,23:0:0:18,23:644,828:-120.429,-67.9158,-62.4973,-52.8717,0,-45.948	1/1:305:0,305,0:0:0:305,0:10726,0:-965.077,-91.8142,0,-965.077,-91.8142,-965.077	1/2:252:0,119,133:0:0:119,133:4201,4780:-732.407,-390.313,-354.49,-342.45,0,-302.413	1/2:13:0,7,6:0:0:7,6:248,212:-37.822,-17.6186,-15.5114,-20.557,0,-18.7508	1/2:207:0,79,125:0:0:79,125:2803,4460:-591.956,-363.581,-339.8,-228.37,0,-190.741	1/2:101:0,47,54:0:0:47,54:1654,1928:-292.185,-157.541,-143.393,-134.998,0,-118.742	1/1:181:0,181,0:0:0:181,0:6395,0:-575.639,-54.4864,0,-575.639,-54.4864,-575.639	1/1:689:1,687,1:1:36:687,1:24282,36:-2180.84,-203.87,0,-2178.2,-203.87,-2180.84	1/2:471:0,202,269:0:0:202,269:7107,9648:-1365.35,-787.135,-726.327,-578.568,0,-497.591	1/1:490:0,490,0:0:0:490,0:17190,0:-1546.6,-147.505,0,-1546.6,-147.505,-1546.6	1/1:742:0,741,1:0:0:741,1:26059,36:-2344.18,-223.063,0,-2341.24,-219.766,-2340.94	1/2:670:0,305,365:0:0:305,365:10740,13037:-1936.89,-1062.59,-970.772,-874.655,0,-764.779	1/1:89:0,89,0:0:0:89,0:3123,0:-281.293,-26.7917,0,-281.293,-26.7917,-281.293	1/2:154:0,78,76:0:0:78,76:2746,2713:-445.08,-221.534,-198.054,-223.901,0,-201.023	1/2:134:0,65,69:0:0:65,69:2304,2468:-389.298,-201.602,-182.036,-188.051,0,-167.28	1/2:220:0,63,157:0:0:63,157:2223,5608:-638.595,-457.582,-438.617,-181.367,0,-134.105	1/2:40:0,15,25:0:0:15,25:524,892:-115.696,-73.0739,-68.5585,-42.9742,0,-35.4484	1/2:111:0,53,58:0:0:53,58:1879,2076:-322.672,-169.643,-153.688,-153.385,0,-135.925	1/2:204:0,78,122:0:0:78,122:2742,4356:-578.317,-355.128,-331.648,-223.183,0,-186.457	1/2:29:0,16,13:0:0:16,13:576,468:-85.5449,-38.5463,-33.7298,-47.3585,0,-43.4451	1/1:22:0,22,0:0:0:22,0:775,0:-70.0712,-6.62266,0,-70.0712,-6.62266,-70.0712	1/2:50:0,25,25:0:0:25,25:875,892:-144.261,-73.0739,-65.5482,-71.5404,0,-64.0146	1/1:105:0,105,0:0:0:105,0:3670,0:-330.485,-31.6082,0,-330.485,-31.6082,-330.485	1/2:208:0,115,93:0:0:115,93:4057,3317:-601.1,-270.752,-236.133,-330.703,0,-302.707	1/2:92:0,33,59:0:0:33,59:1168,2094:-266.105,-170.969,-161.035,-95.4899,0,-77.7291	1/1:107:0,105,2:0:0:105,2:3699,61:-332.439,-31.6082,0,-327.554,-26.4179,-326.952	1/2:95:0,51,44:0:0:51,44:1782,1557:-272.13,-127.173,-111.821,-145.309,0,-132.063	1/2:721:0,371,349:0:0:371,349:13037,12517:-2081.55,-1020.94,-909.255,-1060.61,0,-955.55	1/2:150:0,59,91:0:0:59,91:2091,3262:-436.747,-266.407,-248.646,-170.697,0,-143.303	1/1:62:0,62,0:0:0:62,0:2196,0:-197.902,-18.6639,0,-197.902,-18.6639,-197.902	1/1:244:0,244,0:0:0:244,0:8618,0:-775.585,-73.4513,0,-775.585,-73.4513,-775.585	1/1:145:0,145,0:0:0:145,0:5105,0:-459.597,-4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chr10	4157035	.	TCG	CCG	90049.8	PASS	AB=0.519731;ABP=14.5786;AC=138;AF=0.734043;AN=188;AO=4355;CIGAR=1X2M;DP=6014;DPB=6014;DPRA=65.3478;EPP=9459.77;EPPR=3549.02;GTI=1;LEN=1;MEANALT=1.26087;MQM=59.9798;MQMR=59.9908;NS=94;NUMALT=1;ODDS=0.839624;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155969;QR=57905;RO=1633;RPL=0;RPP=9459.77;RPPR=3549.02;RPR=4355;RUN=1;SAF=4355;SAP=9459.77;SAR=0;SRF=1633;SRP=3549.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:11,8:11:393:8:280:-19.8192,0,-29.9912	1/1:96:0,95:0:0:95:3408:-306.594,-28.5979,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:118:62,55:62:2186:55:1980:-142.894,0,-161.423	0/1:26:17,9:17:608:9:324:-21.6791,0,-47.2255	0/1:34:23,11:23:820:11:388:-25.0223,0,-63.8869	0/1:69:33,36:33:1178:36:1296:-96.1729,0,-85.5572	0/1:111:58,51:58:2034:51:1828:-131.701,0,-150.232	0/1:60:22,38:22:778:38:1368:-105.359,0,-52.2802	0/1:98:47,50:47:1674:50:1800:-132.722,0,-121.388	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:29:16,13:16:574:13:468:-33.7298,0,-43.2644	1/1:44:0,44:0:0:44:1570:-141.591,-13.2453,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:41:0,41:0:0:41:1467:-132.325,-12.3422,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:16:7,9:7:247:9:324:-24.6894,0,-17.7567	0/1:131:80,51:80:2833:51:1832:-125.726,0,-215.773	0/1:125:48,76:48:1661:76:2713:-206.833,0,-112.193	1/1:87:0,86:0:0:86:3085:-277.517,-25.8886,0	1/1:63:1,62:1:36:62:2228:-197.186,-15.3666,0	1/1:76:1,75:1:36:75:2681:-237.935,-19.28,0	0/1:51:28,22:28:992:22:788:-55.9099,0,-74.2605	1/1:264:1,263:1:36:263:9398:-842.183,-75.8736,0	0/1:127:55,72:55:1951:72:2580:-194.218,0,-137.636	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/1:182:100,82:100:3534:82:2940:-210.046,0,-263.483	0/1:96:51,44:51:1824:44:1565:-112.182,0,-135.484	1/1:81:0,81:0:0:81:2897:-260.964,-24.3834,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:122:0,120:0:0:120:4302:-386.725,-36.1236,0	0/1:132:68,64:68:2421:64:2296:-167.165,0,-178.41	0/1:19:9,10:9:313:10:360:-27.0247,0,-22.786	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:104:49,55:49:1739:55:1971:-146.357,0,-125.486	0/1:76:25,51:25:898:51:1832:-142.283,0,-58.2625	0/1:82:44,37:44:1567:37:1332:-95.4391,0,-116.533	0/1:38:17,21:17:604:21:752:-56.5671,0,-43.2509	1/1:40:0,40:0:0:40:1410:-127.195,-12.0412,0	0/1:70:36,34:36:1274:34:1218:-88.8543,0,-93.8897	1/1:55:0,52:0:0:52:1864:-167.727,-15.6536,0	0/1:126:58,68:58:2061:68:2435:-181.475,0,-147.831	0/1:98:57,41:57:2019:41:1472:-103.275,0,-152.482	1/1:80:0,79:0:0:79:2813:-253.05,-23.7814,0	0/1:146:52,92:52:1832:92:3272:-251.131,0,-121.585	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:126:62,63:62:2205:63:2268:-166.393,0,-160.727	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:69:0,69:0:0:69:2457:-221.384,-20.7711,0	0/1:23:14,8:14:504:8:273:-17.9198,0,-38.7156	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:17:4,13:4:142:13:468:-37.3421,0,-8.0117	0/1:39:13,25:13:468:25:900:-69.5988,0,-30.7348	0/1:58:28,30:28:997:30:1080:-80.0535,0,-72.5846	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:252:105,147:105:3704:147:5279:-399.384,0,-257.706	1/1:133:0,132:0:0:132:4720:-424.729,-39.736,0	0/1:62:30,32:30:1070:32:1152:-85.3263,0,-77.9479	1/1:47:0,47:0:0:47:1672:-150.767,-14.1484,0	0/1:169:69,100:69:2457:100:3567:-270.363,0,-170.511	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:52:0,52:0:0:52:1854:-167.138,-15.6536,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:14:0,14:0:0:14:504:-45.6935,-4.21442,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:62:0,62:0:0:62:2213:-199.163,-18.6639,0	1/1:84:0,84:0:0:84:3005:-270.68,-25.2865,0	1/1:122:0,122:0:0:122:4387:-395.001,-36.7257,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:113:0,112:0:0:112:4019:-361.556,-33.7154,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0	0/1:56:32,23:32:1110:23:824:-57.5669,0,-83.2881	0/1:129:60,68:60:2133:68:2434:-180.423,0,-153.347	1/1:62:0,62:0:0:62:2203:-198.534,-18.6639,0	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:80:36,44:36:1283:44:1584:-118.769,0,-91.6916	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:49:17,32:17:612:32:1152:-89.2397,0,-40.663	0/1:33:14,19:14:498:19:678:-51.4143,0,-35.2215	0/1:12:10,2:10:360:2:72:-3.22436,0,-29.1319	0/1:41:14,27:14:500:27:968:-75.0951,0,-32.9942	0/1:52:33,19:33:1163:19:684:-46.2368,0,-89.3214	1/1:78:0,77:0:0:77:2741:-246.572,-23.1793,0	1/1:43:0,43:0:0:43:1539:-138.802,-12.9443,0
chr10	4178810	.	GTTTTTTCTTCCTTCTCCTCTG	GTTTTTTCTTTCTTCTCCTCTG,GTTTTTCATTTTTCTCCTCTG	131021	PASS	AB=0.498977,0.482315;ABP=3.0414,12.3036;AC=140,48;AF=0.744681,0.255319;AN=188;AO=4638,1661;CIGAR=10M1X11M,1M1D6M1X1M2X10M;DP=6416;DPB=6338.95;DPRA=34.4839,1.26718;EPP=9935.8,3609.83;EPPR=16.0391;GTI=2;LEN=1,21;MEANALT=2.62366,3.26531;MQM=59.9927,41.4299;MQMR=60;NS=94;NUMALT=2;ODDS=2.9056;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=165832,55725;QR=209;RO=6;RPL=4622,1661;RPP=9935.8,3609.83;RPPR=16.0391;RPR=16,0;RUN=1,1;SAF=0,0;SAP=10074.3,3609.83;SAR=4638,1661;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,17,9:0:0:17,9:608,317:-75.1908,-25.6058,-20.4883,-49.9345,0,-47.2252	1/1:63:0,60,0:0:0:60,0:2160,0:-194.354,-18.0618,0,-194.354,-18.0618,-194.354	1/1:72:0,72,0:0:0:72,0:2572,0:-231.73,-21.6742,0,-231.73,-21.6742,-231.73	1/2:68:0,35,32:0:0:35,32:1252,1080:-186.553,-84.4465,-73.9105,-102.089,0,-92.4563	1/2:36:0,17,19:0:0:17,19:608,629:-99.3268,-49.7332,-44.6157,-49.9345,0,-44.2149	1/2:36:0,17,18:0:0:17,18:608,627:-99.173,-49.5838,-44.4663,-49.7211,0,-44.3026	1/2:89:0,33,53:0:0:33,53:1188,1719:-230.274,-133.322,-123.388,-96.9798,0,-81.0252	1/2:133:0,58,74:0:0:58,74:2084,2486:-366.85,-196.826,-179.366,-170.01,0,-147.734	1/2:57:0,26,31:0:0:26,31:936,1088:-163.297,-86.934,-79.1072,-76.715,0,-67.3831	1/2:85:0,33,49:0:0:33,49:1184,1648:-225.59,-129.001,-119.067,-96.6265,0,-81.876	1/1:48:0,46,0:0:0:46,0:1648,0:-148.316,-13.8474,0,-148.316,-13.8474,-148.316	1/2:63:0,36,27:0:0:36,27:1292,933:-179.691,-74.2916,-63.4545,-105.747,0,-97.6189	1/1:70:0,70,0:0:0:70,0:2512,0:-226.332,-21.0721,0,-226.332,-21.0721,-226.332	1/1:77:0,77,0:0:0:77,0:2741,0:-246.931,-23.1793,0,-246.931,-23.1793,-246.931	1/1:61:0,59,0:0:0:59,0:2112,0:-189.989,-17.7608,0,-189.989,-17.7608,-189.989	1/1:45:0,45,0:0:0:45,0:1612,0:-145.37,-13.5464,0,-145.37,-13.5464,-145.37	1/1:53:0,52,0:0:0:52,0:1864,0:-167.68,-15.6536,0,-167.68,-15.6536,-167.68	1/1:59:0,58,0:0:0:58,0:2076,0:-186.751,-17.4597,0,-186.751,-17.4597,-186.751	1/2:26:0,11,15:0:0:11,15:396,502:-72.4712,-40.1463,-36.835,-32.6714,0,-28.156	1/2:64:0,23,39:0:0:23,39:824,1236:-163.28,-96.0607,-89.1371,-67.2367,0,-55.4965	1/2:110:0,69,40:0:0:69,40:2446,1294:-301.011,-101.726,-80.9545,-199.363,0,-187.322	1/1:48:1,47,0:1:32:47,0:1688,0:-149.008,-11.2501,0,-149.309,-14.1484,-151.886	1/1:73:0,73,0:0:0:73,0:2612,0:-235.328,-21.9752,0,-235.328,-21.9752,-235.328	1/1:191:0,182,5:0:0:182,5:6509,156:-585.593,-54.7875,0,-573.254,-42.4332,-571.749	1/2:61:0,30,29:0:0:30,29:1080,949:-162.811,-74.6663,-65.6354,-88.2349,0,-79.505	1/1:198:0,192,0:0:0:192,0:6866,0:-617.695,-57.7978,0,-617.695,-57.7978,-617.695	1/2:151:0,86,64:0:0:86,64:3058,2187:-421.619,-172.404,-146.515,-249.198,0,-229.932	1/2:21:0,10,11:0:0:10,11:360,376:-59.437,-30.0503,-27.04,-29.734,0,-26.4227	1/2:146:0,67,77:0:0:67,77:2389,2671:-406.64,-211.891,-191.722,-194.781,0,-171.601	1/2:79:0,37,42:0:0:37,42:1328,1395:-217.975,-109.633,-98.4948,-108.684,0,-96.0409	1/1:81:0,80,0:0:0:80,0:2856,0:-256.918,-24.0824,0,-256.918,-24.0824,-256.918	1/1:7:0,4,0:0:0:4,0:144,0:-12.9576,-1.20412,0,-12.9576,-1.20412,-12.9576	1/2:24:2,17,5:2:71:17,5:612,150:-55.2649,-5.88003,-6.56505,-44.1559,0,-48.4354	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:187:0,184,0:0:0:184,0:6589,0:-592.729,-55.3895,0,-592.729,-55.3895,-592.729	1/2:157:0,79,75:0:0:79,75:2840,2521:-430.631,-198.918,-175.136,-231.782,0,-209.204	1/2:54:0,29,25:0:0:29,25:1040,842:-151.957,-67.1158,-58.386,-85.1845,0,-77.6587	1/2:4:0,2,2:0:0:2,2:72,72:-11.9327,-6.05307,-5.45101,-6.23466,0,-5.6326	1/2:42:0,23,19:0:0:23,19:820,623:-116.198,-49.3352,-42.4115,-67.1988,0,-61.4793	1/2:31:0,19,12:0:0:19,12:684,405:-88.1265,-32.297,-26.5774,-56.1708,0,-52.5584	1/2:78:0,47,29:0:0:47,29:1676,960:-211.898,-75.2559,-61.1075,-136.7,0,-127.97	1/2:66:0,36,30:0:0:36,30:1296,1019:-185.83,-80.0658,-69.2287,-106.107,0,-97.076	1/1:43:0,42,0:0:0:42,0:1512,0:-136.073,-12.6433,0,-136.073,-12.6433,-136.073	1/2:149:0,88,57:0:0:88,57:3134,1897:-404.441,-148.984,-122.493,-255.5,0,-238.341	1/1:57:0,54,0:0:0:54,0:1940,0:-174.576,-16.2556,0,-174.576,-16.2556,-174.576	1/2:115:0,58,55:0:0:58,55:2080,1809:-310.495,-140.83,-123.37,-169.644,0,-153.087	1/2:70:0,41,28:0:0:41,28:1476,950:-194.935,-74.4811,-62.1389,-120.532,0,-112.103	1/1:45:0,45,0:0:0:45,0:1616,0:-145.73,-13.5464,0,-145.73,-13.5464,-145.73	1/2:161:0,71,83:0:0:71,83:2483,2849:-428.144,-226.14,-204.767,-202.027,0,-177.042	1/2:7:0,1,6:0:0:1,6:36,212:-19.9731,-17.0332,-16.7321,-3.29724,0,-1.49106	1/2:96:0,43,50:0:0:43,50:1540,1682:-258.612,-133.007,-120.062,-125.664,0,-110.612	1/1:29:0,29,0:0:0:29,0:1032,0:-93.1935,-8.72987,0,-93.1935,-8.72987,-93.1935	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	1/1:88:0,86,0:0:0:86,0:3088,0:-277.787,-25.8886,0,-277.787,-25.8886,-277.787	1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chr10	4204979	.	G	C	20978.2	PASS	AB=0.480374;ABP=11.96;AC=49;AF=0.266304;AN=184;AO=1307;CIGAR=1X;DP=5274;DPB=5274;DPRA=1.00259;EPP=2841.12;EPPR=8606.39;GTI=0;LEN=1;MEANALT=1.01961;MQM=59.9258;MQMR=59.9945;NS=92;NUMALT=1;ODDS=0.883107;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46338;QR=141188;RO=3966;RPL=1307;RPP=2841.12;RPPR=8606.39;RPR=0;RUN=1;SAF=1307;SAP=2841.12;SAR=0;SRF=3966;SRP=8615.07;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/0:59:59,0:59:2081:0:0:0,-17.7608,-187.559	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:63:29,34:29:1036:34:1208:-90.0612,0,-74.589	0/1:22:13,9:13:455:9:324:-22.8832,0,-34.6593	0/1:27:18,9:18:644:9:324:-21.378,0,-50.1628	0/1:44:31,13:31:1103:13:468:-29.2143,0,-86.3345	0/1:65:42,23:42:1489:23:816:-54.1948,0,-114.736	0/1:18:12,6:12:432:6:207:-13.5484,0,-33.8027	0/1:87:48,39:48:1716:39:1355:-96.0425,0,-128.536	0/0:63:63,0:63:2237:0:0:0,-18.9649,-201.592	0/1:72:34,38:34:1191:38:1333:-98.5886,0,-85.8202	0/0:67:67,0:67:2368:0:0:0,-20.169,-213.377	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:83:83,0:83:2959:0:0:0,-24.9855,-266.544	0/0:62:62,0:62:2198:0:0:0,-18.6639,-198.085	0/1:23:10,13:10:356:13:459:-34.7204,0,-25.4576	0/1:75:42,33:42:1497:33:1175:-83.4797,0,-112.445	0/1:78:44,34:44:1572:34:1216:-86.2662,0,-118.291	0/0:77:76,1:76:2715:1:36:0,-19.581,-240.995	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:63:60,3:60:2151:3:108:0,-8.88972,-183.781	0/1:51:31,20:31:1104:20:701:-48.0592,0,-84.3181	0/0:165:165,0:165:5893:0:0:0,-49.6699,-530.48	0/1:69:52,17:52:1868:17:596:-33.1951,0,-147.628	0/1:27:11,16:11:392:16:563:-42.8714,0,-27.4922	0/1:100:56,44:56:1996:44:1580:-112.389,0,-149.811	0/1:42:32,10:32:1135:10:347:-18.9204,0,-89.8148	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:205:205,0:205:7311:0:0:0,-61.7111,-658.041	0/1:93:57,36:57:2036:36:1279:-87.4167,0,-155.516	0/1:85:42,43:42:1447:43:1535:-112.855,0,-104.931	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:53:25,28:25:892:28:985:-73.0069,0,-64.6451	0/1:45:18,27:18:635:27:968:-73.891,0,-43.9306	0/1:48:31,17:31:1116:17:594:-39.3361,0,-86.3023	0/1:67:38,29:38:1347:29:1032:-73.0245,0,-101.36	0/0:62:62,0:62:2177:0:0:0,-18.6639,-196.193	0/1:59:24,35:24:851:35:1250:-95.0424,0,-59.1487	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:70:27,43:27:964:43:1505:-114.669,0,-66.0047	0/1:58:37,21:37:1332:21:744:-49.8246,0,-102.723	0/0:58:57,1:57:2048:1:36:0,-13.8615,-180.993	0/1:98:67,31:67:2395:31:1116:-71.2498,0,-186.306	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:41:17,24:17:612:24:842:-63.6972,0,-43.0712	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:39:37,2:37:1315:2:72:0,-4.90345,-111.814	0/1:20:8,12:8:284:12:428:-32.8382,0,-19.8828	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:29:21,8:21:741:8:288:-17.5375,0,-58.2817	0/1:110:50,60:50:1783:60:2156:-161.157,0,-127.639	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:97:37,60:37:1324:60:2147:-164.297,0,-90.2622	0/0:142:142,0:142:5058:0:0:0,-42.7463,-455.364	0/1:28:20,8:20:703:8:279:-17.0187,0,-55.1647	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/1:89:43,46:43:1544:46:1644:-121.457,0,-112.461	0/0:38:38,0:38:1334:0:0:0,-11.4391,-120.358	0/0:35:35,0:35:1228:0:0:0,-10.536,-110.776	0/0:25:25,0:25:872:0:0:0,-7.52575,-78.7936	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.607	0/0:56:56,0:56:1997:0:0:0,-16.8577,-179.997	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/1:54:31,23:31:1112:23:802:-56.2412,0,-84.1357	0/1:105:43,62:43:1482:62:2169:-163.865,0,-102.058	0/0:97:97,0:97:3438:0:0:0,-29.1999,-309.632	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:79:79,0:79:2815:0:0:0,-23.7814,-253.59	0/1:136:65,71:65:2311:71:2520:-186.11,0,-167.31	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:83:28,55:28:996:55:1965:-152.138,0,-64.9694	0/1:82:44,38:44:1555:38:1336:-95.8527,0,-115.557	0/1:77:34,43:34:1201:43:1520:-113.911,0,-85.2143	0/1:80:36,43:36:1271:43:1512:-112.229,0,-90.5511	0/1:77:29,48:29:1044:48:1682:-128.483,0,-71.0955	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:124:124,0:124:4409:0:0:0,-37.3277,-396.983
chr10	4205018	.	A	G	88862.7	PASS	AB=0.591642;ABP=202.009;AC=139;AF=0.739362;AN=188;AO=4443;CIGAR=1X;DP=5563;DPB=5563;DPRA=59.8065;EPP=9650.86;EPPR=2430.72;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.8046;MQMR=59.7987;NS=94;NUMALT=1;ODDS=0.953892;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153268;QR=38778;RO=1118;RPL=0;RPP=9650.86;RPPR=2430.72;RPR=4443;RUN=1;SAF=0;SAP=9650.86;SAR=4443;SRF=0;SRP=2430.72;SRR=1118;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:10,10:10:334:10:349:-25.7223,0,-24.3623	1/1:63:0,63:0:0:63:2179:-196.374,-18.9649,0	1/1:132:0,132:0:0:132:4472:-402.155,-39.736,0	0/1:109:38,71:38:1301:71:2469:-189.625,0,-84.5716	0/1:27:12,15:12:428:15:522:-39.1795,0,-30.731	0/1:25:6,19:6:198:19:680:-54.0034,0,-10.6175	0/1:46:13,33:13:442:33:1151:-90.0013,0,-26.2569	0/1:20:10,10:10:351:10:356:-26.3606,0,-25.9061	0/1:26:10,16:10:341:16:551:-42.0752,0,-23.191	0/1:24:8,16:8:279:16:549:-42.5075,0,-18.2228	1/1:70:0,70:0:0:70:2424:-218.415,-21.0721,0	0/1:76:28,48:28:961:48:1603:-121.67,0,-63.9203	1/1:72:0,72:0:0:72:2481:-222.914,-21.6742,0	1/1:62:0,62:0:0:62:2053:-185.035,-18.6639,0	1/1:62:0,62:0:0:62:2104:-189.597,-18.6639,0	1/1:46:0,46:0:0:46:1553:-140.053,-13.8474,0	1/1:18:0,18:0:0:18:599:-54.2235,-5.41854,0	1/1:29:0,29:0:0:29:998:-90.1282,-8.72987,0	0/1:26:10,16:10:336:16:552:-42.1788,0,-22.736	0/1:171:57,114:57:1963:114:3933:-302.683,0,-125.464	0/1:55:25,30:25:884:30:1045:-77.7861,0,-63.2767	1/1:81:0,81:0:0:81:2815:-253.392,-24.3834,0	1/1:58:0,58:0:0:58:1958:-176.477,-17.4597,0	1/1:34:1,33:1:36:33:1115:-97.049,-6.63675,0	0/1:50:25,25:25:892:25:870:-63.4568,0,-65.5482	1/1:124:1,123:1:36:123:4315:-384.906,-33.7294,0	0/1:93:35,58:35:1230:58:1992:-151.549,0,-83.0021	0/1:25:7,18:7:236:18:601:-46.8777,0,-14.0441	0/1:137:46,91:46:1614:91:3143:-241.852,0,-104.197	0/1:84:23,61:23:802:61:2167:-170.01,0,-47.2109	1/1:39:0,39:0:0:39:1327:-119.721,-11.7402,0	1/1:6:0,6:0:0:6:192:-17.5934,-1.80618,0	0/1:13:6,7:6:207:7:241:-18.1113,0,-15.0535	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:298:-27.1417,-2.70927,0	0/1:24:5,19:5:172:19:667:-53.1299,0,-8.59325	1/1:144:0,144:0:0:144:4912:-442.245,-43.3483,0	0/1:72:27,45:27:933:45:1545:-117.649,0,-62.6037	0/1:51:23,28:23:828:28:960:-71.3552,0,-59.4912	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:130:49,81:49:1735:81:2810:-213.993,0,-117.27	0/1:39:17,22:17:582:22:767:-57.6093,0,-40.9612	0/1:75:34,41:34:1189:41:1453:-108.485,0,-84.7355	0/1:31:19,12:19:656:12:424:-29.1645,0,-50.025	1/1:43:1,42:1:36:42:1420:-124.492,-9.34602,0	0/1:47:16,31:16:568:31:1054:-81.0129,0,-37.3035	1/1:77:0,77:0:0:77:2721:-245.13,-23.1793,0	0/1:64:33,31:33:1142:31:1029:-73.6357,0,-83.8146	0/1:45:29,16:29:982:16:568:-37.8985,0,-75.1349	1/1:110:0,110:0:0:110:3890:-350.297,-33.1133,0	0/1:74:30,44:30:1058:44:1536:-116.253,0,-73.2452	0/1:11:5,6:5:167:6:212:-16.0762,0,-12.0471	0/1:163:70,92:70:2461:92:3232:-241.967,0,-172.417	1/1:55:0,55:0:0:55:1954:-176.135,-16.5567,0	1/1:8:0,8:0:0:8:284:-25.8951,-2.40824,0	1/1:121:0,121:0:0:121:4118:-370.806,-36.4246,0	0/1:14:7,7:7:244:7:240:-17.7193,0,-18.085	1/1:11:0,11:0:0:11:342:-31.0787,-3.31133,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:39:12,27:12:428:27:917:-71.0909,0,-27.1186	0/1:76:39,37:39:1347:37:1236:-88.6549,0,-98.6462	0/1:5:1,4:1:36:4:135:-10.9774,0,-2.09312	0/1:108:51,57:51:1772:57:2006:-148.301,0,-127.243	1/1:72:0,72:0:0:72:2492:-224.519,-21.6742,0	0/1:44:20,24:20:703:24:818:-60.6799,0,-50.3476	1/1:79:0,79:0:0:79:2746:-247.353,-23.7814,0	0/1:68:30,38:30:1041:38:1356:-101.87,0,-73.5271	1/1:112:0,112:0:0:112:3895:-350.738,-33.7154,0	1/1:48:0,48:0:0:48:1630:-146.984,-14.4494,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:37:0,37:0:0:37:1282:-115.679,-11.1381,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:55:0,55:0:0:55:1919:-172.9,-16.5567,0	1/1:78:0,78:0:0:78:2725:-245.245,-23.4803,0	1/1:72:0,72:0:0:72:2524:-227.409,-21.6742,0	1/1:198:0,197:0:0:197:6863:-617.304,-59.3029,0	1/1:52:0,52:0:0:52:1797:-162.006,-15.6536,0	1/1:68:0,68:0:0:68:2375:-214.004,-20.47,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:118:1,117:1:36:117:4055:-361.499,-31.9233,0	0/1:54:22,32:22:727:32:1080:-81.196,0,-49.4779	0/1:77:26,51:26:893:51:1809:-139.888,0,-57.5015	1/1:44:0,44:0:0:44:1452:-130.957,-13.2453,0	1/1:65:0,65:0:0:65:2235:-201.414,-19.567,0	1/1:29:0,29:0:0:29:964:-87.063,-8.72987,0	0/1:83:39,44:39:1336:44:1458:-106.52,0,-95.5444	1/1:19:0,19:0:0:19:651:-58.91,-5.71957,0	0/1:43:24,19:24:816:19:648:-45.6955,0,-60.7774	0/1:52:21,31:21:705:31:1050:-79.1481,0,-48.1066	0/1:61:22,39:22:763:39:1316:-100.313,0,-50.4924	0/1:96:43,53:43:1479:53:1760:-129.777,0,-104.324	0/1:48:27,21:27:928:21:703:-49.1315,0,-69.3797	1/1:86:0,86:0:0:86:2973:-267.791,-25.8886,0	1/1:66:0,66:0:0:66:2244:-202.217,-19.868,0
chr10	4205032	.	A	G	18462.5	PASS	AB=0.427655;ABP=130.572;AC=49;AF=0.260638;AN=188;AO=1206;CIGAR=1X;DP=5638;DPB=5638;DPRA=1.02348;EPP=2613.13;EPPR=9618.29;GTI=2;LEN=1;MEANALT=1.03774;MQM=59.6551;MQMR=59.8489;NS=94;NUMALT=1;ODDS=2.43015;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42804;QR=157827;RO=4428;RPL=1;RPP=2613.13;RPPR=9618.29;RPR=1205;RUN=1;SAF=0;SAP=2621.81;SAR=1206;SRF=0;SRP=9618.29;SRR=4428;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:11,12:11:392:12:415:-30.7519,0,-28.6872	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.584	0/0:129:129,0:129:4584:0:0:0,-38.8329,-412.71	0/1:115:72,42:72:2563:42:1484:-99.2552,0,-196.226	0/1:28:15,13:15:540:13:464:-33.6687,0,-40.5077	0/1:26:19,7:19:676:7:248:-14.8374,0,-53.3412	0/1:45:33,12:33:1180:12:432:-25.6748,0,-92.9089	0/1:21:10,11:10:360:11:389:-29.026,0,-26.4227	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0112	0/1:24:14,10:14:492:10:360:-25.5196,0,-37.3876	0/0:68:68,0:68:2414:0:0:0,-20.47,-217.516	0/1:77:48,29:48:1691:29:1031:-69.9233,0,-129.296	0/0:70:70,0:70:2512:0:0:0,-21.0721,-224.961	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:65:65,0:65:2308:0:0:0,-19.5669,-207.892	0/0:47:47,0:47:1670:0:0:0,-14.1484,-150.586	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:28:18,10:18:626:10:360:-24.3151,0,-48.2345	0/1:167:110,57:110:3931:57:2044:-133.96,0,-303.661	0/1:57:30,27:30:1076:27:960:-69.5344,0,-79.9893	0/0:80:79,1:79:2827:1:36:0,-20.4878,-251.073	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.417	0/0:35:34,1:34:1193:1:36:0,-6.93777,-104.075	0/1:52:26,26:26:936:26:927:-68.0938,0,-68.9013	0/0:129:128,1:128:4558:1:36:0,-35.2346,-406.789	0/1:105:62,43:62:2216:43:1536:-106.814,0,-168.087	0/1:25:18,7:18:640:7:234:-13.8603,0,-50.4036	0/1:138:90,48:90:3202:48:1702:-111.903,0,-246.856	0/1:85:60,25:60:2137:25:873:-53.2973,0,-167.009	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/1:24:18,5:18:644:5:180:-9.38521,0,-51.1398	0/0:143:142,0:142:5033:0:0:0,-42.7463,-452.754	0/1:75:46,29:46:1628:29:1035:-70.8858,0,-124.095	0/1:52:28,24:28:995:24:851:-60.3155,0,-74.2105	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:130:77,53:77:2735:53:1892:-131.369,0,-207.257	0/1:42:22,20:22:779:20:712:-51.7634,0,-57.7888	0/1:76:40,36:40:1408:36:1266:-91.3161,0,-104.136	0/1:33:12,21:12:432:21:752:-58.0695,0,-29.2872	0/0:45:45,0:45:1570:0:0:0,-13.5463,-141.586	0/1:47:30,17:30:1072:17:590:-39.2749,0,-82.6407	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.632	0/1:70:31,39:31:1100:39:1379:-103.335,0,-78.1495	0/1:48:16,32:16:572:32:1139:-88.3657,0,-37.3594	0/0:108:108,0:108:3849:0:0:0,-32.5112,-346.606	0/1:78:46,32:46:1648:32:1142:-79.6073,0,-125.128	0/1:13:7,6:7:252:6:204:-14.7776,0,-19.0282	0/1:162:90,72:90:3205:72:2579:-183.394,0,-239.897	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.632	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8951	0/0:116:116,0:116:4123:0:0:0,-34.9195,-371.238	0/1:16:6,10:6:212:10:346:-26.4634,0,-14.6074	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8411	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:40:27,13:27:972:13:468:-30.4184,0,-75.7521	0/1:77:36,41:36:1273:41:1464:-108.876,0,-91.6916	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:108:58,50:58:2068:50:1781:-128.056,0,-153.722	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.158	0/1:46:23,23:23:816:23:811:-59.4569,0,-59.9079	0/0:79:79,0:79:2835:0:0:0,-23.7814,-255.359	0/1:68:38,30:38:1355:30:1062:-75.4199,0,-101.78	0/0:116:116,0:116:4138:0:0:0,-34.9195,-372.594	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:36:36,0:36:1278:0:0:0,-10.8371,-115.322	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:56:56,0:56:1981:0:0:0,-16.8577,-178.476	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.019	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/0:201:201,0:201:7215:0:0:0,-60.507,-649.312	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.63	0/0:70:70,0:70:2499:0:0:0,-21.0721,-224.972	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:118:117,1:117:4177:1:36:0,-31.9233,-372.468	0/1:52:29,23:29:1044:23:815:-58.0161,0,-78.4634	0/1:80:51,29:51:1820:29:1040:-69.8286,0,-139.913	0/0:42:41,1:41:1472:1:36:0,-9.04498,-129.178	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/1:88:46,42:46:1625:42:1477:-106.726,0,-120.046	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:44:18,26:18:648:26:892:-67.3323,0,-45.4066	0/1:55:31,24:31:1104:24:842:-59.5404,0,-83.114	0/1:61:37,24:37:1311:24:838:-57.2422,0,-99.9234	0/1:102:53,49:53:1882:49:1740:-126.151,0,-138.952	0/1:51:21,30:21:752:30:1076:-81.798,0,-52.6537	0/0:84:83,0:83:2955:0:0:0,-24.9855,-265.97	0/0:66:66,0:66:2342:0:0:0,-19.868,-211.036
chr10	4214942	.	C	T	188788	PASS	AB=0.529826;ABP=51.3255;AC=138;AF=0.734043;AN=188;AO=9020;CIGAR=1X;DP=11989;DPB=11989;DPRA=32.2177;EPP=19528.9;EPPR=6430.58;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.9713;MQMR=59.9778;NS=94;NUMALT=1;ODDS=2.02724;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=321808;QR=106034;RO=2968;RPL=9014;RPP=19537.6;RPPR=6430.58;RPR=6;RUN=1;SAF=1;SAP=19581;SAR=9019;SRF=0;SRP=6447.94;SRR=2968;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:23,16:23:820:16:557:-38.7154,0,-62.3823	1/1:167:0,167:0:0:167:5974:-537.763,-50.272,0	1/1:130:0,130:0:0:130:4637:-417.493,-39.1339,0	0/1:285:150,135:150:5361:135:4825:-348.61,0,-396.828	0/1:73:41,32:41:1453:32:1122:-79.3086,0,-109.089	0/1:63:23,40:23:809:40:1417:-108.86,0,-54.1634	0/1:199:108,91:108:3853:91:3260:-233.716,0,-287.06	0/1:227:116,111:116:4141:111:3965:-288.706,0,-304.539	0/1:145:69,76:69:2465:76:2722:-201.555,0,-178.452	0/1:150:59,91:59:2120:91:3264:-248.823,0,-145.914	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	0/1:73:41,32:41:1460:32:1140:-80.934,0,-109.721	1/1:114:0,114:0:0:114:4067:-366.217,-34.3174,0	1/1:90:0,90:0:0:90:3240:-291.82,-27.0927,0	1/1:117:0,117:0:0:117:4156:-374.223,-35.2205,0	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	1/1:87:0,87:0:0:87:3132:-282.105,-26.1896,0	1/1:136:0,136:0:0:136:4879:-439.259,-40.9401,0	0/1:63:31,32:31:1112:32:1144:-84.3046,0,-81.4261	0/1:235:107,128:107:3835:128:4558:-339.642,0,-274.601	0/1:152:62,90:62:2224:90:3198:-242.262,0,-154.668	1/1:83:0,83:0:0:83:2961:-266.722,-24.9855,0	1/1:139:1,138:1:36:138:4925:-439.8,-38.2449,0	1/1:187:5,182:5:180:182:6518:-570.145,-39.7405,0	0/1:83:36,47:36:1277:47:1692:-127.581,0,-90.2456	1/1:506:0,506:0:0:506:17967:-1616.63,-152.321,0	0/1:332:159,173:159:5670:173:6220:-459.949,0,-410.448	0/1:51:24,27:24:864:27:972:-72.4454,0,-62.73	0/1:313:115,198:115:4117:198:7060:-541.235,0,-276.472	0/1:185:109,76:109:3882:76:2702:-187.731,0,-293.882	1/1:159:0,159:0:0:159:5650:-508.619,-47.8638,0	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	0/1:15:10,5:10:345:5:180:-12.0366,0,-26.8654	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:331:1,330:1:21:330:11808:-1060.47,-97.541,0	0/1:216:71,145:71:2540:145:5105:-394.574,0,-163.829	0/1:84:39,45:39:1385:45:1599:-118.913,0,-99.6603	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:191:89,102:89:3177:102:3630:-269.406,0,-228.656	0/1:53:30,23:30:1057:23:828:-58.8895,0,-79.4844	0/1:166:87,79:87:3116:79:2802:-202.444,0,-230.696	0/1:114:58,56:58:2080:56:2002:-146.136,0,-153.153	1/1:84:0,84:0:0:84:2989:-269.24,-25.2865,0	0/1:134:67,67:67:2392:67:2385:-174.568,0,-175.198	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:230:93,137:93:3301:137:4920:-373.712,0,-228.054	0/1:177:93,84:93:3325:84:3001:-217.038,0,-246.184	1/1:244:0,244:0:0:244:8745:-787.034,-73.4513,0	0/1:256:109,146:109:3908:146:5199:-390.924,0,-274.79	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:140:67,73:67:2396:73:2580:-190.301,0,-173.753	1/1:101:0,101:0:0:101:3632:-327.083,-30.404,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:123:1,122:1:36:122:4342:-387.356,-33.4284,0	0/1:60:22,38:22:777:38:1345:-103.286,0,-52.1862	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	0/0:13:12,1:12:423:1:36:0,-0.315115,-34.8068	0/1:43:23,20:23:824:20:720:-52.1845,0,-61.539	0/1:141:58,83:58:2080:83:2988:-226.703,0,-145.025	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:228:102,126:102:3634:126:4434:-330.593,0,-258.628	1/1:230:0,230:0:0:230:8256:-743.047,-69.2369,0	0/1:42:18,24:18:635:24:847:-63.9049,0,-44.8337	1/1:91:0,91:0:0:91:3203:-288.489,-27.3937,0	0/1:243:116,127:116:4160:127:4530:-334.713,0,-301.43	1/1:48:0,48:0:0:48:1707:-153.916,-14.4494,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:123:2,121:2:68:121:4333:-383.686,-30.569,0	1/1:92:0,92:0:0:92:3293:-296.587,-27.6948,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:106:0,106:0:0:106:3793:-341.566,-31.9092,0	1/1:100:0,100:0:0:100:3557:-320.333,-30.103,0	1/1:255:0,255:0:0:255:9131:-821.758,-76.7627,0	1/1:234:0,234:0:0:234:8278:-744.856,-70.441,0	1/1:144:0,144:0:0:144:5047:-454.374,-43.3483,0	1/1:225:0,225:0:0:225:8001:-720.107,-67.7318,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:187:2,185:2:72:185:6567:-584.275,-49.4559,0	0/1:120:69,51:69:2480:51:1783:-124.623,0,-187.329	0/1:257:115,142:115:4121:142:5096:-381.417,0,-293.707	1/1:140:0,140:0:0:140:5024:-452.291,-42.1442,0	1/1:94:1,93:1:36:93:3322:-295.562,-24.6985,0	1/1:187:0,187:0:0:187:6716:-604.512,-56.2926,0	0/1:223:103,120:103:3693:120:4262:-316.628,0,-265.44	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	0/1:104:45,59:45:1601:59:2111:-158.951,0,-113.071	0/1:102:48,54:48:1720:54:1923:-142.64,0,-124.38	0/1:54:26,28:26:936:28:1001:-74.1492,0,-68.3038	0/1:81:41,40:41:1468:40:1440:-105.514,0,-108.033	0/1:94:54,40:54:1936:40:1432:-100.878,0,-146.22	1/1:97:0,97:0:0:97:3451:-310.792,-29.1999,0	1/1:152:0,152:0:0:152:5456:-491.167,-45.7566,0
chr10	4214957	.	T	A	48500.3	PASS	AB=0.46883;ABP=55.5331;AC=50;AF=0.265957;AN=188;AO=2944;CIGAR=1X;DP=11924;DPB=11924;DPRA=1.06684;EPP=6395.83;EPPR=19481.1;GTI=0;LEN=1;MEANALT=1.13208;MQM=59.9793;MQMR=59.9676;NS=94;NUMALT=1;ODDS=1.25065;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105425;QR=321187;RO=8970;RPL=2944;RPP=6395.83;RPPR=19481.1;RPR=0;RUN=1;SAF=0;SAP=6395.83;SAR=2944;SRF=0;SRP=19481.1;SRR=8970;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:16,23:16:572:23:828:-63.1039,0,-40.0733	0/0:168:168,0:168:6020:0:0:0,-50.573,-541.904	0/0:127:127,0:127:4521:0:0:0,-38.2308,-407.059	0/1:288:135,152:135:4856:152:5440:-402.974,0,-350.406	0/1:74:32,42:32:1152:42:1499:-112.928,0,-81.7139	0/1:64:41,22:41:1468:22:784:-51.5975,0,-113.13	0/1:202:91,111:91:3272:111:3952:-295.066,0,-233.891	0/1:228:111,117:111:3988:117:4189:-308.556,0,-290.474	0/1:143:74,69:74:2660:69:2470:-179.506,0,-196.528	0/1:146:89,57:89:3196:57:2052:-141.001,0,-243.91	0/0:73:71,0:71:2540:0:0:0,-21.3731,-228.491	0/1:70:31,39:31:1101:39:1396:-104.867,0,-78.3263	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.866	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.633	0/0:115:115,0:115:4101:0:0:0,-34.6184,-369.275	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:135:135,0:135:4833:0:0:0,-40.639,-435.117	0/1:63:33,29:33:1176:29:1044:-75.2502,0,-87.1242	0/1:234:127,107:127:4548:107:3832:-274.611,0,-339.045	0/1:153:92,61:92:3280:61:2184:-150.768,0,-249.136	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:140:140,0:140:5012:0:0:0,-42.1442,-451.226	0/0:189:184,5:184:6600:5:180:0,-40.3426,-577.455	0/1:85:48,37:48:1720:37:1324:-93.8745,0,-129.498	0/0:496:496,0:496:17760:0:0:0,-149.311,-1598.01	0/1:329:174,155:174:6240:155:5540:-399.657,0,-462.653	0/1:52:27,25:27:968:25:896:-65.3068,0,-71.7838	0/1:305:192,113:192:6876:113:4047:-272.585,0,-527.094	0/1:180:74,106:74:2645:106:3792:-287.293,0,-184.109	0/0:157:157,0:157:5613:0:0:0,-47.2617,-505.288	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:331:331,0:331:11888:0:0:0,-99.6409,-1069.77	0/1:220:146,72:146:5202:72:2580:-166.465,0,-402.334	0/1:85:45,40:45:1616:40:1440:-104.31,0,-120.142	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:193:101,92:101:3613:92:3304:-239.479,0,-267.275	0/1:50:23,27:23:816:27:968:-72.3859,0,-58.7102	0/1:164:76,88:76:2694:88:3160:-235.255,0,-193.332	0/1:113:55,58:55:1972:58:2080:-153.454,0,-143.738	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.319	0/1:132:67,65:67:2404:65:2332:-170.402,0,-176.881	0/0:56:56,0:56:1993:0:0:0,-16.8577,-179.642	0/1:228:136,91:136:4869:91:3264:-225.286,0,-369.667	0/1:174:82,92:82:2940:92:3300:-244.839,0,-212.455	0/0:239:239,0:239:8527:0:0:0,-71.9462,-767.427	0/1:256:149,107:149:5337:107:3830:-267.833,0,-403.397	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:141:73,68:73:2613:68:2440:-177.41,0,-192.971	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.841	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:123:122,1:122:4388:1:36:0,-33.4284,-391.493	0/1:61:38,23:38:1360:23:816:-55.396,0,-104.338	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0	0/1:44:20,24:20:705:24:860:-64.4765,0,-50.5275	0/1:141:84,57:84:3016:57:2032:-140.707,0,-229.223	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:226:127,98:127:4532:98:3520:-248.916,0,-339.957	0/0:230:230,0:230:8248:0:0:0,-69.2369,-742.243	0/1:40:22,18:22:788:18:648:-46.6107,0,-59.2036	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/1:243:127,116:127:4541:116:4144:-299.994,0,-335.703	0/0:50:49,1:49:1756:1:36:0,-11.4532,-154.726	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:121:119,2:119:4276:2:72:0,-29.5879,-378.18	0/0:92:92,0:92:3312:0:0:0,-27.6948,-298.297	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:106:106,0:106:3816:0:0:0,-31.9092,-343.635	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.818	0/0:254:254,0:254:9116:0:0:0,-76.4616,-820.409	0/0:229:229,0:229:8158:0:0:0,-68.9359,-734.061	0/0:142:142,0:142:5046:0:0:0,-42.7463,-454.286	0/0:225:225,0:225:8050:0:0:0,-67.7317,-724.514	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:189:187,2:187:6682:2:72:0,-50.0579,-594.617	0/1:116:50,66:50:1784:66:2372:-178.818,0,-125.923	0/1:254:140,113:140:5020:113:4043:-287.538,0,-375.425	0/0:137:137,0:137:4920:0:0:0,-41.2411,-442.935	0/0:94:94,0:94:3330:0:0:0,-28.2968,-299.847	0/0:189:189,0:189:6758:0:0:0,-56.8947,-608.291	0/1:225:122,103:122:4388:103:3676:-263.313,0,-327.32	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/1:102:58,44:58:2069:44:1559:-109.895,0,-155.774	0/1:99:53,46:53:1896:46:1652:-119.167,0,-141.116	0/1:53:28,25:28:1008:25:900:-65.3664,0,-75.0802	0/1:83:43,40:43:1544:40:1436:-104.552,0,-114.268	0/1:94:37,57:37:1324:57:2036:-155.215,0,-91.1629	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.374	0/0:151:151,0:151:5424:0:0:0,-45.4555,-488.287
chr10	4243251	.	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chr10	4288276	.	A	T	10233.9	PASS	AB=0.376489;ABP=258.874;AC=46;AF=0.244681;AN=188;AO=730;CIGAR=1X;DP=4603;DPB=4603;DPRA=0.789778;EPP=1588.19;EPPR=8408.78;GTI=5;LEN=1;MEANALT=1.02174;MQM=59.9616;MQMR=60;NS=94;NUMALT=1;ODDS=0.326831;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26107;QR=138122;RO=3871;RPL=0;RPP=1588.19;RPPR=8408.78;RPR=730;RUN=1;SAF=730;SAP=1588.19;SAR=0;SRF=3871;SRP=8408.78;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/1:81:56,25:56:1993:25:892:-56.2163,0,-155.259	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/1:34:21,13:21:741:13:468:-32.2246,0,-56.7766	0/1:85:56,29:56:2012:29:1033:-67.6926,0,-155.766	0/1:23:14,9:14:504:9:305:-20.8535,0,-38.7744	0/1:20:16,4:16:572:4:144:-7.29302,0,-45.7928	0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.923	0/1:58:31,27:31:1108:27:962:-69.4238,0,-82.5713	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/1:74:47,27:47:1665:27:972:-65.5217,0,-127.859	0/1:68:41,27:41:1468:27:968:-66.9673,0,-111.946	0/0:88:88,0:88:3104:0:0:0,-26.4906,-279.583	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/1:25:21,4:21:756:4:144:-5.78787,0,-60.8415	0/1:40:27,12:27:942:12:432:-27.1212,0,-72.9902	0/0:180:180,0:180:6395:0:0:0,-54.1854,-575.639	0/1:90:50,40:50:1796:40:1440:-102.805,0,-134.83	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	0/0:120:120,0:120:4259:0:0:0,-36.1236,-383.487	0/1:27:19,8:19:684:8:269:-16.4083,0,-53.7625	0/0:50:49,1:49:1749:1:36:0,-11.4532,-154.094	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:16:12,4:12:402:4:144:-8.49714,0,-31.6828	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:121:121,0:121:4336:0:0:0,-36.4246,-390.415	0/1:120:77,43:77:2756:43:1540:-102.769,0,-212.158	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.2574	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:39:31,8:31:1116:8:288:-14.5272,0,-89.0115	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:53:39,14:39:1396:14:504:-29.7435,0,-109.985	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	0/0:32:32,0:32:1117:0:0:0,-9.63296,-100.835	0/1:50:32,18:32:1152:18:633:-42.2436,0,-88.9386	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/0:113:112,0:112:3993:0:0:0,-33.7154,-359.2	0/1:56:37,19:37:1328:19:684:-45.0326,0,-102.965	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/1:57:39,18:39:1400:18:644:-41.1319,0,-109.14	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:51:31,20:31:1108:20:720:-49.7762,0,-84.6785	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:62:62,0:62:2183:0:0:0,-18.6639,-196.731	0/1:26:19,7:19:684:7:252:-15.2022,0,-54.0635	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:44:31,13:31:1108:13:464:-28.852,0,-86.7857	0/0:92:92,0:92:3312:0:0:0,-27.6948,-298.297	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:94:58,36:58:2073:36:1277:-86.9343,0,-158.542	0/0:163:163,0:163:5837:0:0:0,-49.0679,-525.44	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/1:95:77,18:77:2760:18:648:-30.054,0,-220.044	0/0:112:112,0:112:3989:0:0:0,-33.7154,-359.2	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:93:93,0:93:3321:0:0:0,-27.9958,-299.107	0/0:54:54,0:54:1906:0:0:0,-16.2556,-171.814	0/0:55:55,0:55:1952:0:0:0,-16.5566,-175.956	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.491	0/1:39:24,15:24:864:15:540:-37.1964,0,-66.3424	0/1:69:41,28:41:1460:28:1008:-70.2653,0,-110.925	0/0:84:84,0:84:2966:0:0:0,-25.2865,-267.172	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:81:43,38:43:1540:38:1359:-98.2264,0,-114.51	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:51:25,26:25:896:26:916:-67.4025,0,-65.6078	0/1:32:19,13:19:684:13:464:-32.4645,0,-52.2574	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:57:31,26:31:1097:26:921:-66.0474,0,-81.8793	0/1:35:14,21:14:488:21:752:-57.4702,0,-33.7144	0/0:69:69,0:69:2434:0:0:0,-20.7711,-219.313	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.151
chr10	4288321	.	G	A	69828.2	PASS	AB=0.598403;ABP=150.449;AC=142;AF=0.755319;AN=188;AO=3394;CIGAR=1X;DP=4105;DPB=4105;DPRA=22.0591;EPP=7372.99;EPPR=1542.58;GTI=5;LEN=1;MEANALT=1.02151;MQM=59.9976;MQMR=59.9704;NS=94;NUMALT=1;ODDS=0.00144029;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118259;QR=24938;RO=709;RPL=3394;RPP=7372.99;RPPR=1542.58;RPR=0;RUN=1;SAF=3394;SAP=7372.99;SAR=0;SRF=709;SRP=1542.58;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:13,7:13:452:7:248:-16.6436,0,-34.9905	1/1:49:0,49:0:0:49:1708:-154.005,-14.7505,0	1/1:77:0,76:0:0:76:2682:-241.411,-22.8783,0	0/1:78:26,52:26:916:52:1800:-138.799,0,-59.2761	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:18:10,8:10:356:8:284:-20.4848,0,-26.9627	0/1:32:13,19:13:447:19:672:-51.1739,0,-30.9247	0/1:79:26,53:26:919:53:1870:-144.797,0,-59.2164	0/1:20:8,12:8:280:12:428:-32.8382,0,-19.5187	0/1:19:4,15:4:140:15:515:-40.9543,0,-7.22501	1/1:30:0,30:0:0:30:1029:-92.9162,-9.0309,0	0/1:50:25,25:25:862:25:869:-63.473,0,-62.8384	1/1:36:0,36:0:0:36:1240:-111.899,-10.8371,0	1/1:36:0,36:0:0:36:1250:-112.8,-10.8371,0	1/1:42:0,42:0:0:42:1470:-132.594,-12.6433,0	1/1:19:0,19:0:0:19:656:-59.3622,-5.71957,0	1/1:28:0,28:0:0:28:967:-87.3394,-8.42884,0	1/1:24:0,24:0:0:24:855:-77.2702,-7.22472,0	0/1:18:8,10:8:288:10:352:-26.5997,0,-20.8489	0/1:64:25,39:25:896:39:1364:-103.791,0,-61.6944	0/1:60:26,34:26:907:34:1191:-89.4334,0,-63.8826	1/1:70:0,70:0:0:70:2421:-218.146,-21.0721,0	1/1:44:0,44:0:0:44:1542:-139.071,-13.2453,0	0/1:24:4,20:4:144:20:712:-57.1819,0,-6.0889	0/1:37:11,26:11:388:26:906:-70.7154,0,-24.1193	1/1:159:0,158:0:0:158:5471:-492.323,-47.5627,0	0/1:79:38,41:38:1332:41:1460:-107.915,0,-96.3957	0/1:15:6,9:6:212:9:324:-24.9904,0,-14.9093	1/1:102:0,102:0:0:102:3578:-322.23,-30.7051,0	0/1:22:6,16:6:207:16:545:-42.7485,0,-12.3442	1/1:44:1,43:1:36:43:1492:-130.972,-9.64705,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:12:4,8:4:136:8:273:-21.2887,0,-8.96318	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:108:0,108:0:0:108:3771:-339.597,-32.5112,0	0/1:107:41,66:41:1455:66:2288:-173.971,0,-99.035	0/1:29:13,16:13:460:16:550:-41.0935,0,-33.0055	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07869	0/1:36:8,28:8:284:28:975:-77.2245,0,-15.0663	0/1:14:7,7:7:248:7:236:-17.3555,0,-18.4498	0/1:43:15,28:15:528:28:991:-76.5592,0,-34.9071	0/1:32:21,11:21:740:11:384:-25.2617,0,-57.2904	1/1:29:0,29:0:0:29:1004:-90.669,-8.72987,0	0/1:49:18,31:18:640:31:1097:-84.2875,0,-43.1788	1/1:60:0,60:0:0:60:2083:-187.738,-18.0618,0	1/1:97:0,97:0:0:97:3351:-301.81,-29.1999,0	0/1:51:19,32:19:671:32:1127:-86.3849,0,-45.3633	1/1:63:0,63:0:0:63:2216:-199.706,-18.9649,0	0/1:49:17,32:17:603:32:1118:-86.1755,0,-39.849	0/1:5:1,4:1:36:4:129:-10.4234,0,-2.09312	0/1:49:19,30:19:671:30:1034:-78.6151,0,-45.9653	1/1:24:0,24:0:0:24:847:-76.5494,-7.22472,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:53:0,53:0:0:53:1819:-163.988,-15.9546,0	0/1:23:6,17:6:212:17:608:-48.1283,0,-12.5011	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:38:12,26:12:424:26:890:-68.9694,0,-27.0573	1/1:85:1,84:1:36:84:2889:-256.649,-21.9893,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:88:35,53:35:1248:53:1904:-145.147,0,-86.1342	1/1:145:0,145:0:0:145:5101:-459.241,-43.6494,0	0/1:28:11,17:11:392:17:585:-44.543,0,-27.1912	1/1:29:0,29:0:0:29:1008:-91.0308,-8.72987,0	0/1:84:17,67:17:591:67:2347:-186.201,0,-28.2287	1/1:96:0,96:0:0:96:3288:-296.144,-28.8989,0	1/1:12:0,12:0:0:12:411:-37.3179,-3.61236,0	1/1:44:0,44:0:0:44:1505:-135.738,-13.2453,0	1/1:37:1,36:1:36:36:1283:-112.174,-7.53984,0	1/1:8:0,8:0:0:8:272:-24.8112,-2.40824,0	1/1:26:0,26:0:0:26:896:-80.9507,-7.82678,0	1/1:39:0,39:0:0:39:1353:-122.066,-11.7402,0	1/1:81:0,81:0:0:81:2842:-256.021,-24.3834,0	1/1:83:0,83:0:0:83:2892:-260.518,-24.9855,0	1/1:49:0,49:0:0:49:1706:-153.825,-14.7505,0	1/1:49:0,49:0:0:49:1713:-154.454,-14.7505,0	1/1:12:0,12:0:0:12:412:-37.4092,-3.61236,0	1/1:42:0,42:0:0:42:1467:-132.324,-12.6433,0	0/1:35:15,20:15:536:20:712:-53.8706,0,-38.0388	0/1:62:27,35:27:953:35:1228:-92.16,0,-67.4195	1/1:80:0,80:0:0:80:2754:-248.104,-24.0824,0	1/1:30:0,30:0:0:30:1040:-93.9065,-9.0309,0	1/1:30:0,30:0:0:30:1047:-94.5392,-9.0309,0	0/1:79:37,42:37:1297:42:1419:-104.217,0,-93.2475	1/1:26:0,26:0:0:26:889:-80.3202,-7.82678,0	0/1:48:27,21:27:922:21:735:-52.022,0,-68.8402	0/1:29:12,17:12:428:17:596:-45.2379,0,-30.1289	0/1:24:14,10:14:473:10:341:-23.7939,0,-35.6665	0/1:54:26,28:26:896:28:981:-72.3468,0,-64.6951	0/1:28:21,7:21:748:7:240:-13.5058,0,-59.2165	1/1:58:0,58:0:0:58:2014:-181.53,-17.4597,0	1/1:77:0,77:0:0:77:2693:-242.616,-23.1793,0
chr10	4309411	.	A	G	83604.7	PASS	AB=0.472989;ABP=18.8467;AC=141;AF=0.766304;AN=184;AO=4085;CIGAR=1X;DP=5412;DPB=5412;DPRA=9.9011;EPP=8821.44;EPPR=2865.04;GTI=1;LEN=1;MEANALT=1.01099;MQM=45.2818;MQMR=59.7044;NS=92;NUMALT=1;ODDS=1.03723;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144847;QR=47443;RO=1326;RPL=4079;RPP=8821.44;RPPR=2865.04;RPR=6;RUN=1;SAF=4085;SAP=8873.48;SAR=0;SRF=1326;SRP=2882.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:18,18:18:648:18:631:-42.5108,0,-47.8114	1/1:36:0,36:0:0:36:1292:-113.536,-10.8371,0	1/1:196:0,196:0:0:196:6975:-610.25,-59.0019,0	0/1:92:52,40:52:1868:40:1405:-97.9799,0,-140.405	0/1:23:14,9:14:500:9:324:-22.1741,0,-38.4125	0/1:26:11,15:11:381:15:519:-37.3671,0,-26.7227	0/1:82:37,45:37:1320:45:1599:-117.629,0,-94.3726	0/1:70:31,39:31:1112:39:1372:-99.2666,0,-78.6897	0/1:58:36,22:36:1283:22:760:-49.1536,0,-98.2431	0/1:48:21,27:21:756:27:968:-72.2205,0,-53.9178	1/1:31:0,31:0:0:31:1103:-98.418,-9.33193,0	0/1:56:25,31:25:888:31:1066:-77.0728,0,-63.381	1/1:65:0,65:0:0:65:2300:-202.223,-19.567,0	1/1:57:0,57:0:0:57:1989:-176.569,-17.1587,0	1/1:55:0,55:0:0:55:1933:-171.691,-16.5567,0	1/1:48:0,48:0:0:48:1707:-150.451,-14.4494,0	1/1:52:0,52:0:0:52:1837:-162.009,-15.6536,0	1/1:27:0,27:0:0:27:917:-80.9023,-8.12781,0	0/1:30:15,15:15:536:15:536:-38.4127,0,-39.543	0/1:55:29,26:29:1040:26:923:-65.2872,0,-77.3568	0/1:108:41,67:41:1463:67:2363:-177.139,0,-99.4479	1/1:63:1,62:1:36:62:2204:-193.602,-15.3666,0	1/1:60:0,60:0:0:60:2145:-190.788,-18.0618,0	1/1:61:1,60:1:36:60:2132:-185.996,-14.7646,0	0/1:68:45,23:45:1616:23:815:-52.2312,0,-125.26	1/1:119:0,119:0:0:119:4248:-378.606,-35.8226,0	0/1:142:77,65:77:2760:65:2311:-162.289,0,-205.787	0/1:22:9,13:9:316:13:464:-34.6582,0,-22.1562	1/1:136:0,136:0:0:136:4846:-433.5,-40.9401,0	0/1:49:27,22:27:968:22:765:-53.0722,0,-72.6419	1/1:70:0,70:0:0:70:2473:-218.608,-21.0721,0	1/1:3:0,3:0:0:3:108:-9.93584,-0.90309,0	0/1:6:2,4:2:72:4:144:-10.5719,0,-5.03054	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.1966,-1.50515,0	.:.:.:.:.:.:.:.	1/1:115:0,115:0:0:115:4042:-361.688,-34.6185,0	0/1:115:56,59:56:2003:59:2116:-152.167,0,-145.92	0/1:53:29,24:29:1040:24:834:-57.4275,0,-77.9585	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:65:32,33:32:1148:33:1171:-84.2461,0,-83.5052	0/1:24:11,13:11:396:13:468:-34.6929,0,-28.758	0/1:111:79,32:79:2816:32:1127:-66.895,0,-220.216	0/1:34:17,17:17:608:17:603:-43.9025,0,-44.817	1/1:48:0,48:0:0:48:1679:-149.442,-14.4494,0	0/1:62:37,25:37:1316:25:900:-61.6889,0,-100.075	1/1:66:0,66:0:0:66:2340:-205.929,-19.868,0	1/1:81:0,81:0:0:81:2895:-257.139,-24.3834,0	0/1:66:34,32:34:1224:32:1148:-82.2648,0,-90.5697	1/1:85:0,85:0:0:85:3044:-270.685,-25.5876,0	0/1:103:40,63:40:1427:63:2246:-169.437,0,-97.672	1/1:1:0,1:0:0:1:36:-3.56681,-0.30103,0	0/1:68:45,23:45:1611:23:824:-52.4102,0,-124.796	1/1:55:0,55:0:0:55:1946:-173.245,-16.5567,0	1/1:4:0,4:0:0:4:144:-13.0277,-1.20412,0	1/1:69:1,68:1:36:68:2421:-211.575,-17.1728,0	0/1:25:5,20:5:180:20:716:-56.6894,0,-9.02631	1/1:4:0,4:0:0:4:144:-13.2414,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	0/1:74:35,39:35:1260:39:1387:-99.1154,0,-91.4293	1/1:85:0,85:0:0:85:3010:-267.422,-25.5876,0	0/1:4:2,2:2:72:2:72:-5.57282,0,-5.6326	0/1:89:40,49:40:1425:49:1751:-129.036,0,-101.754	1/1:117:0,117:0:0:117:4153:-370.189,-35.2205,0	0/1:36:23,13:23:828:13:459:-29.8071,0,-64.0008	1/1:31:0,31:0:0:31:1099:-97.8942,-9.33193,0	0/1:66:32,34:32:1148:34:1198:-87.2988,0,-83.7619	1/1:89:0,89:0:0:89:3170:-282.351,-26.7917,0	1/1:23:0,23:0:0:23:824:-72.2154,-6.92369,0	1/1:42:0,42:0:0:42:1491:-131.179,-12.6433,0	1/1:51:0,51:0:0:51:1763:-158.126,-15.3525,0	1/1:8:0,8:0:0:8:288:-25.9071,-2.40824,0	1/1:65:0,64:0:0:64:2272:-199.638,-19.2659,0	1/1:39:0,39:0:0:39:1404:-123.865,-11.7402,0	1/1:82:0,82:0:0:82:2911:-255.863,-24.6845,0	1/1:128:0,128:0:0:128:4555:-405.917,-38.5318,0	1/1:93:0,93:0:0:93:3315:-288.519,-27.9958,0	1/1:68:0,68:0:0:68:2432:-212.804,-20.47,0	1/1:4:0,4:0:0:4:144:-13.0277,-1.20412,0	1/1:44:0,44:0:0:44:1572:-138.019,-13.2453,0	0/1:84:38,46:38:1360:46:1640:-118.872,0,-97.1379	0/1:96:67,29:67:2396:29:1031:-62.8838,0,-186.998	1/1:52:0,52:0:0:52:1835:-163.101,-15.6536,0	1/1:62:0,62:0:0:62:2181:-194.267,-18.6639,0	1/1:39:0,39:0:0:39:1358:-120.667,-11.7402,0	0/1:80:42,38:42:1494:38:1329:-94.7722,0,-110.671	1/1:32:0,32:0:0:32:1107:-96.2138,-9.63296,0	0/1:47:24,23:24:864:23:824:-58.3187,0,-63.9251	0/1:47:29,18:29:1032:18:648:-42.6842,0,-79.0371	0/1:38:23,15:23:828:15:522:-35.1808,0,-63.405	0/1:101:58,43:58:2080:43:1528:-104.248,0,-157.065	0/1:40:29,11:29:1040:11:392:-23.2812,0,-81.8732	1/1:75:0,75:0:0:75:2666:-237.541,-22.5773,0	1/1:64:0,64:0:0:64:2246:-200.627,-19.2659,0
chr10	4325387	.	G	T	41739.2	PASS	AB=0.645394;ABP=690.646;AC=48;AF=0.258065;AN=186;AO=2437;CIGAR=1X;DP=6933;DPB=6933;DPRA=1.22216;EPP=5294.89;EPPR=9722.55;GTI=7;LEN=1;MEANALT=1.01961;MQM=42.3529;MQMR=56.2478;NS=93;NUMALT=1;ODDS=0.374027;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87318;QR=160213;RO=4492;RPL=2437;RPP=5294.89;RPPR=9722.55;RPR=0;RUN=1;SAF=0;SAP=5294.89;SAR=2437;SRF=0;SRP=9757.26;SRR=4492;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:8,34:8:288:34:1224:-94.3601,0,-13.5481	0/0:50:47,3:47:1684:3:108:0,-5.19268,-141.949	0/0:93:91,0:91:3239:0:0:0,-27.3937,-291.09	0/1:150:57,93:57:2040:93:3344:-247.135,0,-138.365	0/1:62:28,34:28:982:34:1201:-86.2958,0,-69.8681	0/1:48:24,24:24:847:24:860:-61.6807,0,-62.0034	0/1:54:17,36:17:612:36:1284:-96.6816,0,-38.2192	0/1:106:34,72:34:1212:72:2573:-194.979,0,-77.3652	0/1:69:27,42:27:968:42:1512:-112.211,0,-66.4963	0/1:103:24,79:24:864:79:2832:-214.667,0,-47.0095	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.616	0/1:101:46,55:46:1629:55:1976:-142.341,0,-116.179	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.423	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.254	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.512	0/0:62:62,0:62:2203:0:0:0,-18.6639,-198.359	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.248	0/0:49:48,0:48:1724:0:0:0,-14.4494,-155.088	0/1:67:31,36:31:1107:36:1273:-90.1064,0,-79.6748	0/1:188:44,144:44:1580:144:5172:-394.039,0,-85.6339	0/1:139:53,86:53:1899:86:3084:-228.417,0,-129.023	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.52	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.43	0/1:18:11,7:11:392:7:252:-17.1159,0,-30.1167	0/1:46:12,34:12:428:34:1216:-93.0831,0,-24.8276	0/0:130:130,0:130:4605:0:0:0,-39.1339,-414.355	0/1:206:61,145:61:2176:145:5184:-390.197,0,-133.813	0/1:39:16,23:16:567:23:824:-60.6174,0,-39.5835	0/0:167:167,0:167:5975:0:0:0,-50.272,-537.161	0/1:132:58,74:58:2059:74:2645:-192.202,0,-145.752	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.068	0/1:8:4,4:4:144:4:144:-10.6195,0,-10.899	0/1:16:3,13:3:108:13:468:-36.5727,0,-5.18338	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4198	1/1:2:0,2:0:0:2:72:-6.68992,-0.60206,0	0/0:185:185,0:185:6615:0:0:0,-55.6905,-594.693	0/1:78:20,58:20:720:58:2069:-158.645,0,-41.6084	0/1:54:22,32:22:788:32:1142:-83.9059,0,-54.8322	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	0/1:152:57,95:57:2019:95:3415:-252.46,0,-136.06	0/1:42:16,26:16:576:26:936:-68.8039,0,-38.8346	0/1:143:34,109:34:1199:109:3889:-298.626,0,-63.9015	0/1:56:18,38:18:644:38:1368:-102.7,0,-41.3921	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.201	0/1:61:20,41:20:716:41:1476:-111.554,0,-46.2926	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.013	0/0:91:88,3:88:3139:3:108:0,-17.5862,-272.567	0/1:43:25,18:25:884:18:644:-43.6964,0,-66.7859	0/0:90:90,0:90:3211:0:0:0,-27.0927,-288.76	0/1:70:23,47:23:806:47:1692:-128.515,0,-51.2689	0/1:11:2,9:2:68:9:324:-25.2252,0,-3.10527	0/1:137:42,95:42:1499:95:3416:-257.877,0,-93.9174	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.777	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98199	0/0:78:78,0:78:2772:0:0:0,-23.4803,-249.347	0/1:31:14,17:14:504:17:608:-44.298,0,-36.3332	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1659	0/1:10:2,8:2:72:8:288:-22.8034,0,-3.81687	0/1:103:26,77:26:936:77:2740:-209.417,0,-53.3772	0/0:88:87,1:87:3116:1:36:0,-22.9879,-276.836	.:.:.:.:.:.:.:.	0/1:146:76,70:76:2715:70:2497:-175.836,0,-200.287	0/0:90:90,0:90:3207:0:0:0,-27.0927,-287.75	0/1:60:16,44:16:567:44:1565:-119.56,0,-33.207	0/0:54:54,0:54:1924:0:0:0,-16.2556,-172.697	0/1:115:28,87:28:987:87:3118:-238.789,0,-54.3812	0/0:83:80,3:80:2829:3:108:0,-15.1779,-244.154	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.564	0/0:34:34,0:34:1216:0:0:0,-10.235,-108.954	0/0:44:44,0:44:1559:0:0:0,-13.2453,-140.427	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.042	0/0:44:44,0:44:1576:0:0:0,-13.2453,-141.939	0/0:67:67,0:67:2367:0:0:0,-20.169,-213.111	0/0:78:78,0:78:2787:0:0:0,-23.4803,-250.485	0/0:146:146,0:146:5203:0:0:0,-43.9504,-467.199	0/0:93:93,0:93:3307:0:0:0,-27.9958,-297.516	0/0:82:75,7:75:2671:7:252:0,-2.15,-217.787	0/0:20:20,0:20:708:0:0:0,-6.0206,-63.931	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.588	0/1:70:29,41:29:1032:41:1468:-108.172,0,-71.9245	0/1:164:58,106:58:2068:106:3791:-282.03,0,-136.597	0/0:52:52,0:52:1855:0:0:0,-15.6536,-166.483	0/0:91:91,0:91:3242:0:0:0,-27.3937,-290.966	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.436	0/1:147:68,79:68:2427:79:2844:-204.88,0,-174.175	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.1557	0/1:76:42,34:42:1492:34:1216:-83.2124,0,-111.638	0/1:98:39,59:39:1396:59:2120:-157.086,0,-96.3276	0/1:75:28,47:28:1008:47:1688:-125.092,0,-67.778	0/1:137:48,89:48:1724:89:3200:-239.096,0,-114.113	0/1:72:16,56:16:576:56:2016:-154.542,0,-30.3675	0/0:104:104,0:104:3711:0:0:0,-31.3071,-333.838	0/0:129:129,0:129:4620:0:0:0,-38.8329,-414.976
chr10	4417030	.	C	G	8385.02	PASS	AB=0.465217;ABP=15.095;AC=44;AF=0.234043;AN=188;AO=541;CIGAR=1X;DP=2527;DPB=2527;DPRA=1.01963;EPP=1169.11;EPPR=4298.2;GTI=3;LEN=1;MEANALT=1;MQM=50.6007;MQMR=59.4733;NS=94;NUMALT=1;ODDS=0.563239;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=19275;QR=70466;RO=1986;RPL=540;RPP=1169.11;RPPR=4298.2;RPR=1;RUN=1;SAF=541;SAP=1177.78;SAR=0;SRF=1986;SRP=4315.55;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:3,8:3:104:8:288:-22.8271,0,-6.39148	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:40:18,22:18:640:22:774:-57.4571,0,-45.8875	0/1:3:1,2:1:36:2:72:-5.57552,0,-2.69518	1/1:4:0,4:0:0:4:144:-13.2648,-1.20412,0	0/1:42:26,16:26:913:16:576:-38.6716,0,-69.7266	0/1:23:11,12:11:396:12:432:-32.1363,0,-29.0413	0/1:33:13,20:13:464:20:712:-54.2339,0,-32.1635	0/1:35:24,11:24:856:11:392:-24.9745,0,-66.8247	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/1:28:20,8:20:711:8:284:-17.3832,0,-55.8868	0/0:31:31,0:31:1093:0:0:0,-9.33193,-98.6777	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:24:24,0:24:843:0:0:0,-7.22472,-76.1318	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:12:12,0:12:409:0:0:0,-3.61236,-37.1352	0/1:10:6,4:6:216:4:144:-10.2602,0,-16.7802	0/1:61:30,31:30:1080:31:1093:-79.7341,0,-79.1055	0/1:79:28,51:28:991:51:1828:-140.483,0,-65.6426	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.1912	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.0349	0/1:15:13,2:13:455:2:68:-1.90908,0,-36.7665	0/1:7:2,5:2:68:5:180:-14.4214,0,-4.3505	0/0:33:33,0:33:1159:0:0:0,-9.93399,-104.546	0/1:56:30,26:30:1068:26:932:-65.8861,0,-79.5519	0/1:15:6,9:6:216:9:320:-24.5247,0,-15.2751	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.138	0/1:28:13,15:13:459:15:540:-40.3582,0,-33.2152	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.3336	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45426	0/1:3:2,1:2:72:1:36:-2.68614,0,-5.93363	0/0:76:76,0:76:2657:0:0:0,-22.8783,-239.328	0/1:25:16,9:16:567:9:324:-21.8172,0,-43.835	0/1:4:3,1:3:108:1:36:-2.38511,0,-8.87105	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:24:15,9:15:536:9:324:-22.1722,0,-41.3485	0/1:7:5,2:5:180:2:72:-4.68231,0,-14.4449	0/1:21:16,5:16:572:5:180:-10.1706,0,-45.4918	0/1:33:20,13:20:716:13:450:-30.774,0,-54.8337	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4845	0/1:27:13,14:13:460:14:500:-36.8334,0,-33.6076	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4515	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.779	0/1:35:11,24:11:392:24:856:-65.2376,0,-25.0554	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.3619	0/1:27:20,7:20:711:7:252:-14.7613,0,-56.1878	0/1:7:6,1:6:216:1:36:-1.4596,0,-17.6833	0/1:14:7,7:7:252:7:252:-18.4531,0,-18.8145	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:15:15,0:15:532:0:0:0,-4.51545,-47.7108	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.791	0/1:9:6,3:6:207:3:108:-7.30077,0,-16.2576	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.3536	0/1:9:4,5:4:144:5:176:-13.4391,0,-10.6043	0/1:22:15,7:15:532:7:252:-16.3195,0,-41.5904	0/0:39:38,1:38:1315:1:36:0,-8.147,-115.05	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1034	0/1:110:67,43:67:2391:43:1523:-103.658,0,-181.397	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.587	0/1:32:18,14:18:616:14:485:-34.1753,0,-46.0749	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/1:23:10,13:10:360:13:468:-35.3657,0,-25.8206	0/0:29:28,1:28:999:1:36:0,-5.16306,-86.6577	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2271	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6369	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.611	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.399	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.723	0/0:102:102,0:102:3609:0:0:0,-30.7051,-324.927	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:43:43,0:43:1522:0:0:0,-12.9443,-137.272	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.9953	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.865	0/1:12:9,3:9:320:3:108:-6.40321,0,-25.53	0/1:31:15,16:15:540:16:568:-41.7684,0,-39.6046	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6763	0/0:25:25,0:25:863:0:0:0,-7.52575,-77.9814	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.2421	0/1:47:23,24:23:820:24:864:-63.6268,0,-59.3148	0/0:17:17,0:17:585:0:0:0,-5.11751,-52.9716	0/1:28:15,13:15:517:13:468:-33.9125,0,-38.4253	0/1:27:15,12:15:532:12:423:-30.12,0,-40.0568	0/1:17:6,11:6:216:11:387:-29.9297,0,-14.673	0/1:42:24,18:24:856:18:640:-44.7832,0,-64.7148	0/1:28:10,18:10:360:18:636:-48.9272,0,-24.3155	0/0:96:96,0:96:3403:0:0:0,-28.8989,-306.447	0/0:42:42,0:42:1488:0:0:0,-12.6433,-134.207
chr10	4418924	.	A	G	108335	PASS	AB=0.467553;ABP=38.0985;AC=112;AF=0.595745;AN=188;AO=4300;CIGAR=1X;DP=6889;DPB=6889;DPRA=2.95226;EPP=259.014;EPPR=44.0064;GTI=5;LEN=1;MEANALT=1.02151;MQM=59.9126;MQMR=55.4484;NS=94;NUMALT=1;ODDS=0.593369;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153134;QR=91827;RO=2587;RPL=4270;RPP=9081.58;RPPR=4424.04;RPR=30;RUN=1;SAF=1766;SAP=300.868;SAR=2534;SRF=1258;SRP=7.24161;SRR=1329;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:18,11:18:644:11:396:-27.2351,0,-49.0862	1/1:58:2,56:2:72:56:1973:-171.162,-10.789,0	1/1:71:6,65:6:212:65:2316:-189.43,-2.10845,0	0/1:86:65,21:65:2312:21:754:-42.2983,0,-181.838	0/1:34:27,7:27:956:7:248:-12.4292,0,-75.948	0/1:41:28,13:28:996:13:464:-29.7553,0,-76.5084	0/1:81:54,27:54:1923:27:950:-61.43,0,-148.851	0/1:73:40,33:40:1393:33:1165:-83.1798,0,-102.875	0/1:61:39,22:39:1396:22:780:-52.1602,0,-107.419	0/1:72:55,17:55:1965:17:599:-32.5639,0,-155.151	0/1:107:16,91:16:564:91:3247:-260.241,0,-17.553	0/1:103:46,57:46:1622:57:2036:-152.506,0,-114.473	1/1:156:11,145:11:392:145:5163:-430.143,-12.2934,0	1/1:158:12,146:12:428:146:5213:-430.954,-9.20985,0	1/1:130:8,122:8:284:122:4349:-365.932,-13.481,0	1/1:105:8,97:8:288:97:3449:-284.705,-5.68959,0	1/1:90:3,87:3:108:87:3124:-271.311,-17.0175,0	1/1:110:2,108:2:72:108:3828:-338.21,-26.6085,0	0/1:84:55,29:55:1967:29:1040:-68.6278,0,-150.734	0/1:75:54,21:54:1921:21:756:-45.79,0,-150.586	0/1:76:34,42:34:1197:42:1495:-111.966,0,-84.8513	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.7248	0/1:40:7,33:7:248:33:1179:-94.376,0,-10.2847	0/1:66:13,53:13:453:53:1884:-149.968,0,-20.9714	0/1:26:18,8:18:648:8:279:-17.6208,0,-50.5651	1/1:88:3,85:3:108:85:3003:-260.48,-16.4895,0	0/1:85:49,36:49:1744:36:1275:-89.4647,0,-131.484	0/1:66:37,28:37:1298:28:986:-69.2124,0,-97.1081	1/1:73:4,69:4:144:69:2459:-208.285,-8.69826,0	0/1:47:31,16:31:1108:16:568:-37.3035,0,-85.4142	1/1:49:3,46:3:108:46:1644:-138.29,-4.79173,0	0/1:21:14,7:14:504:7:243:-15.8859,0,-38.7582	0/0:65:61,4:61:2151:4:144:0,-6.25333,-177.062	0/0:111:110,1:110:3894:1:36:0,-29.8161,-335.061	0/0:45:41,4:41:1468:4:140:0,-0.601772,-113.657	0/0:61:60,1:60:2125:1:36:0,-14.7646,-183.697	1/1:224:6,218:6:216:218:7742:-677.134,-47.7493,0	0/1:26:16,10:16:568:10:360:-24.9175,0,-43.5385	0/1:130:91,39:91:3231:39:1392:-86.4369,0,-247.749	0/0:25:25,0:25:896:0:0:0,-7.52575,-79.7938	0/1:82:50,32:50:1780:32:1131:-77.4133,0,-134.804	0/1:56:31,25:31:1104:25:896:-64.1027,0,-82.6403	0/1:78:53,25:53:1892:25:892:-57.1193,0,-145.459	0/1:99:60,39:60:2116:39:1396:-96.1371,0,-159.719	1/1:94:0,94:0:0:94:3337:-300.529,-28.2968,0	0/1:37:27,10:27:964:10:352:-20.8801,0,-75.8063	0/1:49:15,34:15:540:34:1212:-94.6359,0,-32.6024	0/1:35:9,26:9:294:26:919:-72.4901,0,-15.9426	0/1:29:17,12:17:608:12:428:-30.1289,0,-46.3151	0/1:64:8,56:8:288:56:2008:-161.723,0,-6.55424	0/1:58:40,18:40:1424:18:644:-40.8309,0,-110.926	0/0:87:84,3:84:2990:3:108:0,-16.1144,-256.094	0/1:57:43,14:43:1544:14:485:-26.8185,0,-121.464	0/1:22:6,16:6:216:16:568:-44.8292,0,-13.0588	0/1:25:22,3:22:784:3:108:-2.54942,0,-62.0942	0/1:64:13,51:13:468:51:1828:-145.535,0,-20.239	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.1781	0/0:25:23,2:23:792:2:72:0,-0.689027,-63.2137	0/1:24:21,3:21:748:3:108:-2.85045,0,-60.3332	0/1:26:17,9:17:596:9:320:-21.3156,0,-46.141	1/1:119:2,117:2:72:117:4153:-367.117,-28.9858,0	0/0:17:16,1:16:572:1:36:0,-1.51923,-47.7307	0/1:49:30,19:30:1080:19:680:-46.7787,0,-82.7619	1/1:79:4,75:4:144:75:2664:-227.451,-11.2265,0	0/1:39:28,11:28:996:11:396:-24.2426,0,-77.9556	0/1:36:10,26:10:360:26:922:-72.4599,0,-21.679	0/1:66:46,20:46:1648:20:720:-45.2608,0,-128.09	0/1:41:4,37:4:144:37:1328:-107.475,0,-0.855994	0/1:105:27,78:27:942:78:2796:-220.27,0,-51.0724	1/1:37:1,36:1:36:36:1279:-111.813,-7.53984,0	1/1:145:5,140:5:180:140:5018:-435.25,-27.1338,0	0/1:34:20,14:20:712:14:504:-35.4631,0,-53.2176	1/1:14:0,14:0:0:14:485:-43.9767,-4.21442,0	0/1:49:5,44:5:171:44:1576:-127.381,0,-0.468684	1/1:68:2,66:2:72:66:2363:-206.091,-13.6333,0	0/1:81:11,70:11:396:70:2494:-200.289,0,-11.3094	0/1:36:4,32:4:144:32:1131:-91.2607,0,-2.47654	1/1:82:3,79:3:100:79:2828:-245.457,-15.4271,0	0/1:34:28,6:28:983:6:212:-9.18978,0,-76.2552	0/1:66:20,46:20:712:46:1631:-127.21,0,-44.0243	0/1:75:52,23:52:1844:23:812:-50.8237,0,-140.829	0/1:111:79,32:79:2778:32:1148:-70.2155,0,-215.882	1/1:108:7,100:7:252:100:3558:-297.517,-9.61987,0	1/1:131:8,123:8:288:123:4375:-367.817,-13.3272,0	1/1:114:1,113:1:36:113:4011:-357.484,-30.7813,0	0/1:209:121,88:121:4267:88:3152:-220.99,0,-320.218	1/1:44:2,42:2:72:42:1495:-128.149,-6.74048,0	0/1:97:49,48:49:1743:48:1707:-124.707,0,-127.323	0/1:99:50,49:50:1774:49:1752:-128.162,0,-128.816	0/1:126:76,50:76:2703:50:1784:-122.755,0,-204.789	0/1:147:81,66:81:2864:66:2363:-168.677,0,-213.451	0/1:72:46,26:46:1623:26:923:-61.7126,0,-124.639	1/1:67:5,62:5:176:62:2224:-184.242,-3.98638,0	1/1:202:17,185:17:595:185:6547:-535.441,-7.13639,0
chr10	4418949	.	A	T	13579.7	PASS	AB=0.452084;ABP=39.843;AC=42;AF=0.223404;AN=188;AO=848;CIGAR=1X;DP=4445;DPB=4445;DPRA=1.13538;EPP=1758.58;EPPR=3981.02;GTI=0;LEN=1;MEANALT=1;MQM=59.895;MQMR=58.2349;NS=94;NUMALT=1;ODDS=1.41108;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30291;QR=128614;RO=3597;RPL=838;RPP=1758.58;RPPR=2864.1;RPR=10;RUN=1;SAF=0;SAP=1844.42;SAR=848;SRF=197;SRP=6196.39;SRR=3400;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3047	0/0:40:39,1:39:1392:1:36:0,-8.44292,-121.185	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:45:26,19:26:928:19:680:-47.9828,0,-62.5136	0/1:23:13,10:13:468:10:360:-25.8206,0,-34.2515	0/1:27:13,14:13:468:14:504:-36.9394,0,-34.3318	0/1:52:23,29:23:820:29:1040:-78.2608,0,-58.4624	0/1:48:30,18:30:1059:18:640:-43.4799,0,-78.6143	0/1:41:18,23:18:644:23:828:-62.5019,0,-44.4363	0/1:40:19,21:19:680:21:752:-55.9651,0,-49.3851	0/0:83:81,2:81:2904:2:72:0,-18.1488,-253.904	0/1:53:35,18:35:1244:18:648:-42.6964,0,-94.9147	0/0:75:74,1:74:2648:1:36:0,-18.979,-232.855	0/0:112:112,0:112:3984:0:0:0,-33.7154,-357.381	0/0:74:74,0:74:2664:0:0:0,-22.2762,-239.952	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.068	0/0:77:76,1:76:2724:1:36:0,-19.581,-240.529	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.594	0/1:65:40,25:40:1432:25:885:-60.3996,0,-108.783	0/1:62:25,37:25:892:37:1324:-100.798,0,-55.8287	0/1:41:29,12:29:1032:12:428:-26.5166,0,-79.4286	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9959	0/0:18:18,0:18:648:0:0:0,-5.41854,-54.7616	0/1:46:38,8:38:1344:8:269:-10.688,0,-106.474	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7504	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.192	0/1:51:21,30:21:752:30:1064:-80.6493,0,-52.6537	0/1:44:28,16:28:1004:16:576:-38.9297,0,-77.251	0/0:49:49,0:49:1737:0:0:0,-14.7505,-156.61	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/0:34:34,0:34:1212:0:0:0,-10.235,-108.108	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:43:42,1:42:1504:1:34:0,-9.54538,-132.113	0/0:63:63,0:63:2252:0:0:0,-18.9649,-196.08	0/0:26:26,0:26:928:0:0:0,-7.82678,-79.2089	0/0:47:47,0:47:1680:0:0:0,-14.1484,-139.557	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.863	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:88:51,37:51:1821:37:1322:-92.7915,0,-136.168	0/1:16:14,2:14:496:2:72:-2.02024,0,-40.1125	0/1:45:18,27:18:644:27:964:-73.5305,0,-44.7442	0/1:34:15,19:15:536:19:684:-51.6553,0,-38.2231	0/1:55:31,24:31:1112:24:844:-59.7223,0,-82.5565	0/1:65:43,22:43:1544:22:777:-50.6834,0,-119.522	0/0:61:61,0:61:2196:0:0:0,-18.3628,-195.307	0/1:20:11,9:11:392:9:318:-22.9208,0,-29.5542	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:24:24,0:24:841:0:0:0,-7.22472,-74.6372	0/1:17:9,8:9:316:8:284:-20.7858,0,-23.6605	0/0:62:62,0:62:2216:0:0:0,-18.6639,-198.267	0/1:39:14,25:14:504:25:896:-69.2202,0,-33.9015	0/0:90:89,1:89:3188:1:36:0,-23.4944,-280.591	0/1:28:10,18:10:352:18:644:-49.8618,0,-22.3016	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.4218	0/0:21:21,0:21:752:0:0:0,-6.32163,-62.8849	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.622	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.675	0/0:15:15,0:15:536:0:0:0,-4.51545,-47.0607	0/1:21:17,4:17:599:4:144:-6.99199,0,-47.9137	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.5847	0/0:85:84,1:84:3004:1:36:0,-21.9893,-266.055	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4366	0/1:26:17,9:17:608:9:320:-21.3156,0,-47.2252	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.054	0/1:31:14,17:14:500:17:593:-44.3628,0,-36.0027	0/0:33:33,0:33:1180:0:0:0,-9.93399,-102.672	0/1:41:14,27:14:500:27:964:-74.7346,0,-31.9147	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6391	0/0:80:80,0:80:2868:0:0:0,-24.0824,-256.997	0/0:31:31,0:31:1100:0:0:0,-9.33193,-98.0321	0/0:115:115,0:115:4124:0:0:0,-34.6184,-371.336	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.4842	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:32:32,0:32:1152:0:0:0,-9.63296,-102.606	0/0:47:46,1:46:1640:1:36:0,-10.5501,-140.729	0/0:57:56,1:56:2004:1:21:0,-15.059,-174.589	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6947	0/0:53:53,0:53:1892:0:0:0,-15.9546,-169.123	0/1:49:30,19:30:1068:19:676:-46.4175,0,-78.9232	0/1:68:33,35:33:1172:35:1256:-92.8752,0,-85.289	0/0:72:71,1:71:2552:1:36:0,-18.0759,-224.949	0/0:75:74,1:74:2648:1:36:0,-18.979,-234.82	0/0:87:87,0:87:3111:0:0:0,-26.1896,-278.737	0/1:114:64,50:64:2292:50:1788:-126.885,0,-169.588	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.7761	0/1:56:36,20:36:1292:20:716:-47.91,0,-98.4404	0/1:58:39,19:39:1400:19:680:-44.0694,0,-105.963	0/1:99:56,43:56:2004:43:1544:-109.451,0,-150.269	0/1:92:40,52:40:1436:52:1872:-141.064,0,-100.56	0/1:41:21,20:21:756:20:720:-52.7865,0,-55.9345	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.774	0/0:99:98,1:98:3496:1:36:0,-26.2037,-311.069
chr10	4510286	.	T	A	185656	PASS	AB=0.514979;ABP=14.6548;AC=142;AF=0.755319;AN=188;AO=8845;CIGAR=1X;DP=11758;DPB=11758;DPRA=126.419;EPP=19183.6;EPPR=6322;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9769;MQMR=59.9918;NS=94;NUMALT=1;ODDS=3.05307;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=315598;QR=104217;RO=2910;RPL=4;RPP=19175;RPPR=6322;RPR=8841;RUN=1;SAF=1;SAP=19201;SAR=8844;SRF=0;SRP=6322;SRR=2910;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:27,26:27:960:26:908:-66.0779,0,-70.7617	1/1:218:0,218:0:0:218:7809:-702.836,-65.6245,0	1/1:146:0,146:0:0:146:5228:-470.386,-43.9504,0	0/1:261:114,147:114:4100:147:5238:-392.96,0,-290.615	0/1:193:85,108:85:3056:108:3876:-290.935,0,-217.17	0/1:56:27,29:27:964:29:1029:-76.0635,0,-70.2191	0/1:206:107,99:107:3825:99:3556:-258.235,0,-282.433	0/1:203:101,102:101:3628:102:3597:-262.828,0,-265.615	0/1:102:53,49:53:1889:49:1716:-124.015,0,-139.581	0/1:139:65,74:65:2328:74:2646:-196.543,0,-167.937	1/1:50:1,48:1:36:48:1724:-151.847,-11.512,0	0/1:71:40,31:40:1432:31:1080:-76.1326,0,-107.804	1/1:39:0,39:0:0:39:1372:-123.776,-11.7402,0	1/1:52:0,52:0:0:52:1840:-165.878,-15.6536,0	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	1/1:42:0,42:0:0:42:1497:-135.023,-12.6433,0	1/1:53:0,53:0:0:53:1876:-169.116,-15.9546,0	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	0/1:382:187,195:187:6700:195:6957:-511.2,0,-488.082	0/1:170:80,90:80:2860:90:3189:-236.057,0,-206.463	1/1:188:0,188:0:0:188:6705:-603.525,-56.5936,0	1/1:148:0,148:0:0:148:5269:-474.345,-44.5524,0	1/1:176:5,171:5:180:171:6102:-532.726,-36.4292,0	0/1:117:54,63:54:1932:63:2264:-168.802,0,-138.806	1/1:325:0,325:0:0:325:11624:-1046.02,-97.8348,0	0/1:221:119,102:119:4264:102:3652:-262.357,0,-317.41	0/1:36:16,20:16:576:20:707:-53.1175,0,-41.3379	1/1:428:1,427:1:36:427:15279:-1371.22,-125.243,0	0/1:236:132,104:132:4724:104:3706:-262.699,0,-354.276	1/1:217:0,217:0:0:217:7763:-698.701,-65.3235,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:166:0,166:0:0:166:5886:-529.78,-49.971,0	0/1:269:116,153:116:4129:153:5466:-411.091,0,-290.815	0/1:61:31,30:31:1108:30:1064:-77.7088,0,-81.6682	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:344:153,191:153:5471:191:6808:-509.236,0,-388.963	0/1:46:15,31:15:525:31:1100:-85.4629,0,-33.7307	0/1:167:87,80:87:3132:80:2847:-206.195,0,-231.833	0/1:45:26,19:26:936:19:680:-47.9828,0,-71.0131	1/1:53:0,53:0:0:53:1883:-169.747,-15.9546,0	0/1:109:49,60:49:1748:60:2138:-159.874,0,-124.792	1/1:164:0,164:0:0:164:5843:-525.981,-49.3689,0	1/1:266:0,266:0:0:266:9457:-851.089,-80.074,0	0/1:137:66,71:66:2360:71:2520:-185.809,0,-171.418	1/1:213:0,213:0:0:213:7586:-682.71,-64.1194,0	0/1:260:147,113:147:5284:113:4060:-287.318,0,-397.425	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:396:200,196:200:7168:196:7028:-513.373,0,-525.967	1/1:77:0,77:0:0:77:2737:-246.572,-23.1793,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:53:23,30:23:824:30:1080:-81.5587,0,-58.5287	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:18:12,6:12:432:6:208:-13.64,0,-33.8027	0/1:98:46,52:46:1652:52:1841:-136.467,0,-119.468	1/1:109:0,109:0:0:109:3916:-352.632,-32.8123,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:227:94,133:94:3372:133:4758:-360.043,0,-235.362	1/1:298:0,297:0:0:297:10631:-956.211,-89.4059,0	0/1:102:46,56:46:1652:56:1989:-148.577,0,-118.263	1/1:139:0,139:0:0:139:4946:-445.285,-41.8432,0	0/1:217:102,114:102:3652:114:4080:-302.004,0,-263.502	1/1:167:3,164:3:108:164:5843:-515.907,-40.1968,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:131:0,131:0:0:131:4664:-419.922,-39.4349,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:177:0,177:0:0:177:6267:-564.017,-53.2823,0	1/1:76:0,76:0:0:76:2710:-244.143,-22.8783,0	1/1:219:0,219:0:0:219:7782:-700.413,-65.9256,0	1/1:222:0,222:0:0:222:7963:-716.69,-66.8287,0	1/1:213:1,212:1:36:212:7565:-677.294,-60.5211,0	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:160:0,160:0:0:160:5732:-515.993,-48.1648,0	0/1:176:71,105:71:2533:105:3743:-284.088,0,-175.238	0/1:324:182,142:182:6501:142:5078:-359.629,0,-487.641	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:49:0,49:0:0:49:1739:-156.794,-14.7505,0	0/1:111:45,66:45:1616:66:2351:-178.434,0,-112.316	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:71:33,38:33:1172:38:1339:-99.4361,0,-84.4144	0/1:69:33,36:33:1184:36:1284:-95.0923,0,-86.0972	0/1:20:7,13:7:252:13:455:-35.2614,0,-17.0084	0/1:76:40,36:40:1432:36:1280:-92.625,0,-106.299	0/1:57:31,26:31:1116:26:911:-65.1425,0,-83.593	1/1:130:0,130:0:0:130:4671:-420.549,-39.1339,0	1/1:77:1,76:1:36:76:2697:-239.375,-19.581,0
chr10	4514320	.	C	T	96902.3	PASS	AB=0.493112;ABP=4.32651;AC=140;AF=0.752688;AN=186;AO=4838;CIGAR=1X;DP=6475;DPB=6475;DPRA=14.0652;EPP=10508.6;EPPR=3540.36;GTI=1;LEN=1;MEANALT=1;MQM=59.962;MQMR=59.9756;NS=93;NUMALT=1;ODDS=3.49166;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167775;QR=57681;RO=1637;RPL=0;RPP=10508.6;RPPR=3540.36;RPR=4838;RUN=1;SAF=0;SAP=10508.6;SAR=4838;SRF=0;SRP=3557.71;SRR=1637;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:22,6:22:776:6:208:-10.6302,0,-61.7333	1/1:136:1,135:1:36:135:4665:-416.425,-37.3418,0	1/1:95:0,95:0:0:95:3272:-294.706,-28.5979,0	0/1:143:75,68:75:2661:68:2388:-172.046,0,-196.624	0/1:66:32,34:32:1131:34:1187:-87.2661,0,-82.2298	0/1:41:19,22:19:668:22:764:-56.63,0,-48.1034	0/1:58:27,31:27:951:31:1092:-81.1298,0,-68.4446	0/1:127:65,62:65:2272:62:2134:-154.098,0,-166.511	0/1:34:13,21:13:455:21:711:-54.0706,0,-31.0469	0/1:69:40,29:40:1388:29:1003:-69.8085,0,-104.443	1/1:50:0,50:0:0:50:1759:-158.592,-15.0515,0	0/1:35:18,17:18:644:17:596:-43.4317,0,-47.7545	1/1:22:0,22:0:0:22:771:-69.7103,-6.62266,0	1/1:69:0,69:0:0:69:2402:-216.439,-20.7711,0	1/1:29:0,29:0:0:29:1014:-91.57,-8.72987,0	1/1:31:0,31:0:0:31:1096:-98.9499,-9.33193,0	1/1:53:0,53:0:0:53:1876:-169.119,-15.9546,0	1/1:21:0,21:0:0:21:724:-65.4795,-6.32163,0	0/1:27:14,13:14:492:13:456:-33.2454,0,-36.4845	0/1:150:82,68:82:2882:68:2314:-163.367,0,-214.462	0/1:135:70,65:70:2430:65:2247:-161.846,0,-178.316	1/1:89:0,89:0:0:89:2994:-269.695,-26.7917,0	1/1:9:0,9:0:0:9:305:-27.7772,-2.70927,0	1/1:105:3,102:3:108:102:3523:-307.21,-21.533,0	0/1:49:29,20:29:1021:20:693:-47.9382,0,-77.4498	1/1:310:0,310:0:0:310:10790:-971.017,-93.3193,0	0/1:143:79,64:79:2804:64:2163:-151.888,0,-209.554	0/1:21:13,8:13:455:8:280:-19.2177,0,-34.9603	1/1:229:1,228:1:36:228:7884:-706.019,-65.3376,0	0/1:164:79,85:79:2798:85:2927:-214.301,0,-202.692	1/1:47:0,47:0:0:47:1634:-147.347,-14.1484,0	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	0/1:15:10,5:10:351:5:172:-11.3025,0,-27.4112	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:404:-36.6817,-3.61236,0	0/1:10:6,4:6:212:4:140:-9.93428,0,-16.4145	1/1:123:0,123:0:0:123:4322:-389.162,-37.0267,0	0/1:197:106,91:106:3750:91:3146:-224.068,0,-278.372	0/1:53:34,19:34:1192:19:653:-43.1347,0,-91.6278	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:119:60,59:60:2120:59:2059:-149.759,0,-155.244	0/1:22:9,13:9:302:13:460:-35.1127,0,-20.8824	0/1:94:53,41:53:1845:41:1411:-98.9836,0,-138.031	0/1:21:13,8:13:464:8:271:-18.3978,0,-35.7759	1/1:26:0,26:0:0:26:901:-81.4022,-7.82678,0	0/1:43:18,25:18:636:25:856:-64.4094,0,-44.6237	1/1:100:0,100:0:0:100:3473:-312.787,-30.103,0	1/1:134:1,133:1:36:133:4666:-416.477,-36.7397,0	0/1:90:33,57:33:1180:57:1971:-150.573,0,-79.4153	1/1:116:0,116:0:0:116:4036:-363.247,-34.9195,0	0/1:141:67,74:67:2355:74:2500:-182.807,0,-169.762	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	0/1:118:64,54:64:2265:54:1862:-132.337,0,-168.59	1/1:44:0,44:0:0:44:1518:-136.91,-13.2453,0	1/1:4:0,4:0:0:4:121:-11.1896,-1.20412,0	1/1:95:0,95:0:0:95:3276:-295.068,-28.5979,0	0/1:6:5,1:5:176:1:32:-1.39313,0,-14.3788	1/1:8:0,8:0:0:8:276:-25.1752,-2.40824,0	0/1:17:10,7:10:337:7:248:-17.5467,0,-25.5372	0/1:53:24,29:24:847:29:1016:-75.7971,0,-60.5941	1/1:96:0,96:0:0:96:3357:-302.351,-28.8989,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:134:62,72:62:2185:72:2528:-187.436,0,-156.577	1/1:149:2,147:2:72:147:5142:-456.096,-38.0167,0	0/1:65:38,27:38:1340:27:936:-64.9861,0,-101.333	1/1:68:0,68:0:0:68:2367:-212.664,-20.47,0	0/1:114:39,75:39:1375:75:2609:-200.736,0,-89.7305	1/1:111:2,109:2:72:109:3818:-336.985,-26.5776,0	1/1:8:0,8:0:0:8:281:-25.6299,-2.40824,0	1/1:27:0,27:0:0:27:940:-84.913,-8.12781,0	1/1:54:0,54:0:0:54:1887:-170.105,-16.2556,0	1/1:25:0,25:0:0:25:857:-77.4419,-7.52575,0	1/1:86:0,86:0:0:86:2894:-260.706,-25.8886,0	1/1:39:0,39:0:0:39:1348:-121.618,-11.7402,0	1/1:71:0,71:0:0:71:2432:-219.138,-21.3731,0	1/1:113:1,112:1:36:112:3871:-344.995,-30.4181,0	1/1:77:0,77:0:0:77:2662:-239.827,-23.1793,0	1/1:77:2,75:2:72:75:2621:-229.302,-16.3426,0	1/1:11:0,11:0:0:11:373:-33.8952,-3.31133,0	1/1:72:0,72:0:0:72:2481:-223.546,-21.6742,0	0/1:107:54,53:54:1914:53:1855:-135.018,0,-140.326	0/1:154:73,81:73:2551:81:2788:-204.789,0,-183.482	1/1:63:0,63:0:0:63:2216:-199.703,-18.9649,0	1/1:32:0,32:0:0:32:1119:-101.017,-9.63296,0	1/1:30:0,30:0:0:30:1039:-93.8162,-9.0309,0	0/1:97:51,46:51:1807:46:1622:-117.068,0,-133.711	1/1:20:0,20:0:0:20:701:-63.4117,-6.0206,0	0/1:43:28,15:28:988:15:520:-34.1836,0,-76.2896	0/1:32:17,15:17:604:15:536:-38.9419,0,-45.0576	0/1:45:18,27:18:635:27:964:-73.5259,0,-43.9306	0/1:70:31,39:31:1090:39:1346:-100.364,0,-77.3358	0/1:25:11,14:11:396:14:496:-37.4485,0,-28.457	1/1:49:0,49:0:0:49:1675:-151.033,-14.7505,0	1/1:37:0,37:0:0:37:1304:-117.651,-11.1381,0
chr10	4534546	.	C	T	48399.4	PASS	AB=0.454587;ABP=119.57;AC=45;AF=0.239362;AN=188;AO=2988;CIGAR=1X;DP=13762;DPB=13762;DPRA=1.15448;EPP=6482.69;EPPR=23227.2;GTI=1;LEN=1;MEANALT=1.03509;MQM=59.9839;MQMR=59.9926;NS=94;NUMALT=1;ODDS=0.437645;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106950;QR=385124;RO=10771;RPL=1;RPP=6482.69;RPPR=23227.2;RPR=2987;RUN=1;SAF=2988;SAP=6491.37;SAR=0;SRF=10771;SRP=23391.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:30,33:30:1071:33:1180:-87.5426,0,-77.7367	0/0:135:134,1:134:4793:1:36:0,-37.0408,-427.926	0/0:171:170,1:170:6096:1:36:0,-47.8779,-545.142	0/1:344:236,108:236:8425:108:3872:-245.12,0,-654.701	0/1:132:67,65:67:2404:65:2321:-169.412,0,-176.881	0/1:96:55,41:55:1959:41:1472:-103.877,0,-147.686	0/1:192:127,65:127:4544:65:2336:-152.701,0,-351.329	0/1:168:104,64:104:3705:64:2296:-156.328,0,-282.809	0/1:176:84,92:84:3004:92:3289:-243.247,0,-217.61	0/1:181:83,98:83:2964:98:3516:-262.163,0,-212.507	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:86:49,37:49:1764:37:1328:-93.9337,0,-133.155	0/0:86:86,0:86:3079:0:0:0,-25.8886,-277.338	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.186	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/1:34:23,11:23:828:11:392:-25.385,0,-64.5028	0/1:221:107,114:107:3813:114:4091:-301.846,0,-276.839	0/1:211:121,90:121:4320:90:3223:-226.774,0,-325.46	0/0:141:141,0:141:5029:0:0:0,-42.4452,-452.757	0/0:221:218,3:218:7796:3:104:0,-56.8248,-691.968	0/0:186:172,14:172:6122:14:504:0,-10.2935,-505.385	0/1:126:47,78:47:1675:78:2802:-214.579,0,-113.195	0/0:675:675,0:675:24113:0:0:0,-203.195,-2169.52	0/1:317:168,148:168:6017:148:5309:-382.605,0,-446.296	0/1:35:23,12:23:812:12:432:-28.6851,0,-62.8649	0/0:508:508,0:508:18166:0:0:0,-152.923,-1634.54	0/1:184:125,59:125:4491:59:2083:-132.348,0,-348.967	0/0:238:237,1:237:8450:1:36:0,-68.0469,-756.905	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.818	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:236:236,0:236:8447:0:0:0,-71.0431,-760.232	0/1:299:164,135:164:5876:135:4852:-346.824,0,-438.942	0/1:72:28,44:28:1000:44:1584:-121.177,0,-68.6412	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:203:123,80:123:4369:80:2872:-197.607,0,-332.277	0/1:34:21,13:21:756:13:468:-32.2246,0,-58.1322	0/1:229:104,125:104:3721:125:4469:-333.443,0,-266.154	0/1:85:47,38:47:1688:38:1359:-97.0223,0,-126.619	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/1:255:131,124:131:4696:124:4460:-324.805,0,-346.037	0/0:125:125,0:125:4472:0:0:0,-37.6287,-402.65	0/0:386:385,1:385:13807:1:36:0,-112.599,-1238.8	0/1:193:119,74:119:4251:74:2640:-179.748,0,-324.67	0/0:220:219,1:219:7867:1:36:0,-62.6283,-704.454	0/1:293:190,103:190:6788:103:3693:-244.368,0,-522.79	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:153:69,84:69:2472:84:2998:-223.993,0,-176.676	0/0:132:132,0:132:4736:0:0:0,-39.736,-426.397	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:254:253,0:253:9055:0:0:0,-76.1606,-814.716	0/1:94:40,54:40:1432:54:1893:-142.347,0,-100.881	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:33:19,14:19:680:14:496:-35.0403,0,-51.5952	0/1:134:62,72:62:2220:72:2575:-191.661,0,-159.726	0/0:155:155,0:155:5552:0:0:0,-46.6596,-499.804	0/1:10:5,5:5:180:5:167:-12.3481,0,-13.5418	0/1:349:183,166:183:6544:166:5953:-430.815,0,-483.984	0/0:295:292,3:292:10471:3:108:0,-78.7287,-932.229	0/1:88:49,39:49:1755:39:1385:-98.4571,0,-131.743	0/0:149:149,0:149:5319:0:0:0,-44.8535,-478.845	0/1:282:156,126:156:5557:126:4507:-320.907,0,-415.365	0/0:93:92,1:92:3296:1:36:0,-24.3975,-293.261	0/0:15:14,1:14:504:1:36:0,-0.917175,-42.0998	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.534	0/0:111:111,0:111:3954:0:0:0,-33.4143,-356.048	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.87	0/0:189:188,1:188:6728:1:36:0,-53.2964,-601.997	0/0:100:100,0:100:3591:0:0:0,-30.103,-323.395	0/0:301:301,0:301:10775:0:0:0,-90.61,-969.654	0/0:237:237,0:237:8477:0:0:0,-71.3441,-762.93	0/0:233:233,0:233:8322:0:0:0,-70.14,-748.989	0/0:164:164,0:164:5863:0:0:0,-49.3689,-527.782	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:153:151,2:151:5397:2:72:0,-39.2209,-479.023	0/1:171:88,83:88:3093:83:2976:-216.596,0,-227.121	0/1:422:210,212:210:7473:212:7569:-553.726,0,-545.583	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.765	0/0:63:63,0:63:2259:0:0:0,-18.9649,-203.572	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/1:152:78,74:78:2791:74:2635:-191.64,0,-205.673	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:77:43,34:43:1523:34:1224:-87.2877,0,-114.183	0/1:84:45,39:45:1620:39:1400:-101.013,0,-120.803	0/1:44:30,14:30:1076:14:504:-32.4528,0,-83.9075	0/1:86:50,36:50:1792:36:1277:-89.3439,0,-135.674	0/1:53:19,34:19:671:34:1220:-94.1522,0,-44.7612	0/0:265:265,0:265:9428:0:0:0,-79.7729,-848.327	0/0:105:105,0:105:3759:0:0:0,-31.6081,-338.509
chr10	4534649	.	T	A	191560	PASS	AB=0.50568;ABP=4.53964;AC=143;AF=0.760638;AN=188;AO=8965;CIGAR=1X;DP=11689;DPB=11689;DPRA=0;EPP=19314.2;EPPR=5853.11;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.8347;MQMR=59.9533;NS=94;NUMALT=1;ODDS=2.37958;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=321076;QR=97577;RO=2722;RPL=8947;RPP=19314.2;RPPR=5853.11;RPR=18;RUN=1;SAF=0;SAP=19470.3;SAR=8965;SRF=0;SRP=5913.76;SRR=2722;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:25,28:25:900:28:1004:-74.7151,0,-65.3664	1/1:226:1,225:1:36:225:8071:-722.748,-64.4345,0	1/1:164:1,163:1:36:163:5847:-522.721,-45.7706,0	0/1:224:107,117:107:3802:117:4177:-308.679,0,-274.944	0/1:108:62,46:62:2224:46:1643:-115.646,0,-167.913	0/1:77:34,43:34:1224:43:1538:-115.533,0,-87.2877	0/1:215:107,108:107:3820:108:3859:-282.479,0,-279.248	0/1:186:89,97:89:3162:97:3467:-256.231,0,-228.811	0/1:105:49,56:49:1756:56:1988:-147.579,0,-126.716	0/1:122:54,68:54:1944:68:2426:-181.869,0,-138.51	1/1:78:0,78:0:0:78:2795:-251.771,-23.4803,0	0/1:65:29,36:29:1036:36:1279:-95.1565,0,-73.0478	1/1:81:0,81:0:0:81:2912:-262.312,-24.3834,0	1/1:94:0,94:0:0:94:3354:-302.063,-28.2968,0	1/1:55:0,55:0:0:55:1978:-178.295,-16.5567,0	1/1:130:0,130:0:0:130:4676:-420.914,-39.1339,0	1/1:84:0,84:0:0:84:3013:-271.389,-25.2865,0	1/1:51:0,51:0:0:51:1832:-165.15,-15.3525,0	0/1:34:15,19:15:540:19:680:-51.2941,0,-38.7015	0/1:302:178,124:178:6396:124:4435:-308.388,0,-484.815	0/1:131:62,69:62:2212:69:2470:-183.033,0,-159.91	1/1:151:0,151:0:0:151:5419:-487.836,-45.4555,0	1/1:110:1,109:1:36:109:3916:-349.02,-29.515,0	1/1:169:9,160:9:324:160:5757:-487.957,-21.3682,0	0/1:80:46,34:46:1644:34:1220:-86.0182,0,-124.165	1/1:402:2,399:2:57:399:14283:-1279.35,-115.673,0	0/1:298:137,161:137:4916:161:5766:-429.318,0,-352.692	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	1/1:369:1,368:1:36:368:13182:-1182.57,-107.482,0	0/1:169:86,83:86:3096:83:2968:-216.472,0,-227.992	1/1:160:1,159:1:36:159:5696:-509.158,-44.5665,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:41:9,32:9:324:32:1148:-91.2876,0,-17.1636	1/1:14:0,14:0:0:14:502:-45.5172,-4.21442,0	1/1:18:0,18:0:0:18:648:-58.6488,-5.41854,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:187:0,187:0:0:187:6720:-604.872,-56.2926,0	0/1:295:155,140:155:5568:140:5004:-361.704,0,-412.437	0/1:59:28,31:28:1008:31:1116:-82.9909,0,-73.2756	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:200:107,93:107:3833:93:3321:-238.807,0,-284.958	0/1:34:18,16:18:648:16:572:-41.5784,0,-48.4169	0/1:188:85,103:85:3056:103:3684:-275.17,0,-218.675	0/1:70:27,43:27:972:43:1531:-117.01,0,-66.7082	1/1:64:0,64:0:0:64:2295:-206.81,-19.2659,0	0/1:85:30,55:30:1080:55:1972:-152.167,0,-71.9253	1/1:197:0,197:0:0:197:7043:-633.896,-59.3029,0	1/1:240:2,238:2:68:238:8451:-753.758,-65.7895,0	0/1:134:75,59:75:2692:59:2120:-150.73,0,-202.186	1/1:173:0,173:0:0:173:6188:-556.793,-52.0782,0	0/1:239:140,99:140:5028:99:3545:-247.312,0,-380.718	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:178:82,96:82:2952:96:3456:-257.667,0,-212.329	1/1:89:0,89:0:0:89:3192:-287.501,-26.7917,0	1/1:51:0,51:0:0:51:1832:-165.104,-15.3525,0	1/1:126:0,126:0:0:126:4521:-407.036,-37.9298,0	0/1:54:31,23:31:1112:23:828:-58.5885,0,-84.1357	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:42:20,22:20:720:22:788:-58.6015,0,-52.4855	0/1:53:26,27:26:928:27:968:-71.4766,0,-67.8837	1/1:164:2,162:2:72:162:5819:-516.966,-42.5322,0	0/1:18:14,4:14:500:4:144:-7.89508,0,-39.9176	0/1:236:114,122:114:4069:122:4364:-321.865,0,-295.353	1/1:324:2,322:2:68:322:11507:-1029.02,-91.076,0	0/1:94:56,38:56:2012:38:1364:-94.7463,0,-153.056	1/1:153:0,153:0:0:153:5482:-493.453,-46.0576,0	0/1:230:126,104:126:4505:104:3727:-266.393,0,-336.372	1/1:158:0,158:0:0:158:5668:-510.21,-47.5627,0	1/1:33:0,33:0:0:33:1182:-106.685,-9.93399,0	1/1:110:0,109:0:0:109:3912:-351.466,-32.8123,0	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	1/1:22:0,22:0:0:22:788:-71.2163,-6.62266,0	1/1:144:0,144:0:0:144:5139:-462.628,-43.3483,0	1/1:99:0,99:0:0:99:3547:-319.115,-29.802,0	1/1:212:0,212:0:0:212:7591:-683.208,-63.8184,0	1/1:212:1,211:1:36:211:7572:-677.734,-60.2201,0	1/1:126:0,126:0:0:126:4510:-406.043,-37.9298,0	1/1:140:1,139:1:36:139:4949:-441.793,-38.5459,0	1/1:37:0,37:0:0:37:1318:-118.921,-11.1381,0	1/1:170:0,170:0:0:170:6090:-548.12,-51.1751,0	0/1:82:43,39:43:1548:39:1400:-101.611,0,-114.929	0/1:372:149,223:149:5344:223:7999:-607.889,0,-369.109	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:58:0,58:0:0:58:2088:-188.166,-17.4597,0	1/1:82:0,82:0:0:82:2937:-264.561,-24.6845,0	0/1:119:46,73:46:1656:73:2612:-199.505,0,-113.506	1/1:43:0,43:0:0:43:1535:-138.442,-12.9443,0	0/1:93:45,48:45:1620:48:1724:-127.45,0,-118.094	0/1:79:35,44:35:1260:44:1567:-117.451,0,-89.9241	0/1:58:31,27:31:1112:27:968:-69.9776,0,-82.9316	0/1:116:55,61:55:1976:61:2188:-162.266,0,-143.195	0/1:61:40,21:40:1425:21:756:-50.0044,0,-110.183	1/1:179:0,179:0:0:179:6428:-578.56,-53.8844,0	1/1:85:0,85:0:0:85:3021:-272.051,-25.5876,0
chr10	4534655	.	A	T	46140.6	PASS	AB=0.497273;ABP=3.36563;AC=45;AF=0.239362;AN=188;AO=2761;CIGAR=1X;DP=11738;DPB=11738;DPRA=1.42872;EPP=5998.45;EPPR=19492;GTI=1;LEN=1;MEANALT=1.01724;MQM=59.937;MQMR=59.8403;NS=94;NUMALT=1;ODDS=1.63257;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98667;QR=321159;RO=8975;RPL=2761;RPP=5998.45;RPPR=19492;RPR=0;RUN=1;SAF=0;SAP=5998.45;SAR=2761;SRF=0;SRP=19492;SRR=8975;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:28,25:28:1004:25:895:-64.9157,0,-74.7151	0/0:226:224,1:224:8011:1:36:0,-64.4384,-717.403	0/0:162:161,1:161:5745:1:36:0,-45.1686,-513.532	0/1:230:121,109:121:4299:109:3913:-283.123,0,-317.848	0/1:109:45,64:45:1620:64:2276:-172.279,0,-113.276	0/1:78:43,35:43:1548:35:1229:-87.431,0,-116.133	0/1:213:107,106:107:3814:106:3804:-278.409,0,-278.509	0/1:181:95,86:95:3416:86:3050:-220.241,0,-253.158	0/1:105:55,50:55:1953:50:1800:-130.674,0,-144.43	0/1:122:68,54:68:2448:54:1944:-138.51,0,-183.849	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.564	0/1:66:36,30:36:1288:30:1080:-76.7062,0,-95.667	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.953	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.009	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123	0/0:129:129,0:129:4606:0:0:0,-38.8329,-414.644	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.899	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.51	0/1:35:19,16:19:669:16:557:-39.9195,0,-49.9979	0/1:308:124,184:124:4445:184:6562:-497.944,0,-307.479	0/1:132:69,63:69:2484:63:2249:-162.935,0,-183.991	0/0:153:153,0:153:5444:0:0:0,-46.0576,-490.077	0/0:113:112,1:112:4009:1:36:0,-30.4181,-357.392	0/0:169:160,9:160:5748:9:324:0,-21.3682,-486.94	0/1:80:34,46:34:1224:46:1630:-122.904,0,-86.3785	0/0:400:398,2:398:14230:2:72:0,-113.575,-1272.94	0/1:300:161,139:161:5761:139:4936:-354.05,0,-428.267	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7641	0/0:372:372,0:372:13357:0:0:0,-111.983,-1201.9	0/1:169:83,86:83:2984:86:3062:-224.932,0,-217.864	0/0:161:159,2:159:5625:2:72:0,-41.6291,-499.533	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:41:32,9:32:1152:9:324:-17.1636,0,-91.6479	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4103	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:189:189,0:189:6800:0:0:0,-56.8947,-612.067	0/1:301:143,158:143:5121:158:5655:-418.457,0,-370.42	0/1:60:32,28:32:1152:28:1008:-72.9746,0,-85.9274	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:200:90,110:90:3161:110:3911:-291.965,0,-224.412	0/1:35:16,19:16:576:19:669:-49.9979,0,-41.6389	0/1:190:103,87:103:3700:87:3110:-222.931,0,-276.005	0/1:70:44,26:44:1554:26:932:-63.1091,0,-119.076	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:87:55,32:55:1972:32:1142:-76.8994,0,-151.565	0/0:199:198,1:198:7040:1:28:0,-57.1055,-630.792	0/0:239:237,2:237:8472:2:72:0,-65.1094,-754.745	0/1:134:58,76:58:2084:76:2721:-204.793,0,-147.492	0/0:174:173,1:173:6129:1:36:0,-48.7809,-547.573	0/1:236:98,138:98:3509:138:4914:-371.367,0,-244.974	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:176:96,80:96:3437:80:2868:-205.376,0,-256.56	0/0:90:90,0:90:3221:0:0:0,-27.0927,-290.104	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.629	0/0:127:127,0:127:4530:0:0:0,-38.2308,-407.825	0/1:55:23,32:23:828:32:1137:-86.0803,0,-58.2875	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:44:23,21:23:828:21:752:-54.7609,0,-61.5988	0/1:54:27,27:27:972:27:968:-71.1817,0,-71.5361	0/0:163:162,1:162:5771:1:36:0,-45.4696,-515.887	0/1:18:4,14:4:144:14:500:-39.9176,0,-7.89508	0/1:242:126,116:126:4509:116:4160:-301.733,0,-333.086	0/0:325:323,2:323:11540:2:72:0,-90.998,-1031.61	0/1:95:37,58:37:1309:58:2084:-159.232,0,-89.4941	0/0:153:153,0:153:5483:0:0:0,-46.0576,-493.549	0/1:233:105,128:105:3749:128:4558:-340.245,0,-267.469	0/0:158:158,0:158:5684:0:0:0,-47.5627,-511.647	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:110:110,0:110:3922:0:0:0,-33.1133,-353.138	0/0:77:76,0:76:2732:0:0:0,-22.8783,-245.871	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5772	0/0:148:148,0:148:5274:0:0:0,-44.5524,-474.772	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.414	0/0:210:210,0:210:7552:0:0:0,-63.2163,-679.623	0/0:211:209,2:209:7493:2:65:0,-57.5114,-668.382	0/0:123:123,0:123:4405:0:0:0,-37.0267,-396.558	0/0:141:140,1:140:5032:1:36:0,-38.847,-448.247	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.42	0/0:173:173,0:173:6205:0:0:0,-52.0782,-558.334	0/1:82:39,43:39:1385:43:1548:-114.929,0,-100.259	0/1:377:225,152:225:8049:152:5457:-377.768,0,-610.915	0/0:93:93,0:93:3333:0:0:0,-27.9958,-300.185	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.815	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.286	0/1:122:75,47:75:2680:47:1688:-115.481,0,-204.72	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:92:47,45:47:1673:45:1620:-118.395,0,-123.16	0/1:80:44,36:44:1569:36:1296:-92.8615,0,-117.376	0/1:58:27,31:27:972:31:1116:-83.292,0,-70.3382	0/1:116:60,56:60:2160:56:2001:-145.442,0,-159.747	0/1:62:20,42:20:720:42:1508:-117.351,0,-46.4649	0/0:177:177,0:177:6330:0:0:0,-53.2823,-569.788	0/0:86:86,0:86:3088:0:0:0,-25.8886,-277.608
chr10	4534656	.	A	T	190424	PASS	AB=0.505171;ABP=4.29049;AC=143;AF=0.760638;AN=188;AO=9023;CIGAR=1X;DP=11783;DPB=11783;DPRA=0;EPP=19596.2;EPPR=5987.59;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.8223;MQMR=59.9459;NS=94;NUMALT=1;ODDS=2.18489;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=322052;QR=98442;RO=2756;RPL=9023;RPP=19596.2;RPPR=5987.59;RPR=0;RUN=1;SAF=0;SAP=19596.2;SAR=9023;SRF=0;SRP=5987.59;SRR=2756;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:25,28:25:881:28:1008:-75.0756,0,-63.6513	1/1:227:2,225:2:72:225:8038:-716.54,-61.4971,0	1/1:163:2,161:2:72:161:5777:-513.17,-42.2312,0	0/1:230:108,122:108:3854:122:4339:-321.428,0,-277.815	0/1:109:64,45:64:2268:45:1620:-113.276,0,-171.557	0/1:78:34,44:34:1220:44:1572:-118.291,0,-86.6265	0/1:213:106,107:106:3816:107:3790:-276.556,0,-279.488	0/1:184:88,96:88:3130:96:3452:-255.489,0,-226.534	0/1:108:51,57:51:1813:57:1991:-146.946,0,-130.92	0/1:123:54,69:54:1936:69:2471:-185.616,0,-137.49	1/1:79:0,79:0:0:79:2840:-255.802,-23.7814,0	0/1:66:30,36:30:1061:36:1296:-96.384,0,-75.8244	1/1:81:0,81:0:0:81:2916:-262.672,-24.3834,0	1/1:94:0,93:0:0:93:3348:-301.087,-27.9958,0	1/1:55:0,55:0:0:55:1974:-177.935,-16.5567,0	1/1:131:0,131:0:0:131:4678:-421.11,-39.4349,0	1/1:83:0,83:0:0:83:2969:-267.39,-24.9855,0	1/1:50:0,50:0:0:50:1800:-162.272,-15.0515,0	0/1:35:16,19:16:576:19:684:-51.3543,0,-41.6389	0/1:307:183,124:183:6523:124:4419:-305.44,0,-494.735	0/1:131:62,69:62:2219:69:2454:-181.59,0,-160.539	1/1:153:0,153:0:0:153:5451:-490.708,-46.0576,0	1/1:113:1,112:1:36:112:3994:-356.025,-30.4181,0	1/1:169:9,160:9:320:160:5711:-484.357,-21.7317,0	0/1:80:47,33:47:1662:33:1188:-83.14,0,-125.78	1/1:403:2,401:2:72:401:14291:-1278.49,-114.478,0	0/1:298:138,160:138:4960:160:5700:-423.378,0,-356.47	0/1:33:19,14:19:665:14:504:-35.7641,0,-50.2388	1/1:372:2,370:2:72:370:13194:-1180.41,-105.146,0	0/1:172:88,84:88:3168:84:2979:-216.508,0,-233.566	1/1:161:1,160:1:36:160:5688:-508.437,-44.8676,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:41:9,32:9:324:32:1152:-91.6479,0,-17.1636	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:18:0,18:0:0:18:648:-58.6488,-5.41854,0	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	1/1:189:0,189:0:0:189:6785:-610.718,-56.8947,0	0/1:301:157,144:157:5614:144:5135:-371.678,0,-414.769	0/1:60:28,32:28:1008:32:1137:-84.5751,0,-72.9746	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:201:108,93:108:3850:93:3324:-238.775,0,-286.142	0/1:34:19,15:19:684:15:536:-38.3398,0,-51.6553	0/1:191:86,104:86:3080:104:3694:-275.125,0,-219.892	0/1:70:25,45:25:896:45:1601:-123.306,0,-59.8706	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:86:31,55:31:1112:55:1961:-150.875,0,-74.5024	1/1:199:0,199:0:0:199:7129:-641.585,-59.905,0	1/1:240:2,238:2:72:238:8422:-750.54,-65.4105,0	0/1:135:75,60:75:2681:60:2137:-151.957,0,-200.894	1/1:175:0,175:0:0:175:6241:-561.544,-52.6803,0	0/1:240:140,100:140:4991:100:3589:-250.967,0,-377.087	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:178:82,96:82:2933:96:3452:-257.308,0,-210.619	1/1:90:0,90:0:0:90:3236:-291.454,-27.0927,0	1/1:52:0,52:0:0:52:1853:-166.991,-15.6536,0	1/1:131:0,131:0:0:131:4667:-420.148,-39.4349,0	0/1:55:32,23:32:1152:23:820:-57.5659,0,-87.4335	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:44:21,23:21:756:23:828:-61.5988,0,-55.1219	0/1:54:27,27:27:957:27:957:-70.182,0,-70.1882	1/1:163:2,161:2:72:161:5777:-513.204,-42.2312,0	0/1:18:14,4:14:504:4:144:-7.89508,0,-40.2796	0/1:241:117,124:117:4121:124:4415:-324.938,0,-298.523	1/1:325:2,323:2:72:323:11522:-1029.98,-90.998,0	0/1:96:58,38:58:2084:38:1360:-93.7835,0,-158.931	1/1:152:0,152:0:0:152:5419:-487.791,-45.7566,0	0/1:228:123,105:123:4394:105:3736:-267.802,0,-326.995	1/1:160:0,160:0:0:160:5752:-517.764,-48.1648,0	1/1:31:1,30:1:36:30:1065:-92.5632,-5.73537,0	1/1:112:0,112:0:0:112:3998:-359.56,-33.7154,0	1/1:77:1,76:1:36:76:2698:-239.464,-19.581,0	1/1:21:0,21:0:0:21:741:-67.0107,-6.32163,0	1/1:148:0,148:0:0:148:5269:-474.322,-44.5524,0	1/1:100:1,99:1:36:99:3545:-315.234,-26.5057,0	1/1:214:0,214:0:0:214:7642:-687.72,-64.4204,0	1/1:213:1,212:1:36:212:7567:-677.284,-60.5211,0	1/1:126:0,126:0:0:126:4505:-405.555,-37.9298,0	1/1:140:1,139:1:36:139:4953:-441.207,-38.5459,0	1/1:38:0,38:0:0:38:1350:-121.799,-11.4391,0	1/1:172:1,171:1:36:171:6082:-543.713,-48.1806,0	0/1:82:43,38:43:1544:38:1368:-98.6742,0,-114.51	0/1:376:149,227:149:5322:227:8010:-607.654,0,-365.924	1/1:94:0,94:0:0:94:3357:-302.345,-28.2968,0	1/1:59:0,58:0:0:58:2076:-186.727,-17.4597,0	1/1:82:0,82:0:0:82:2937:-264.534,-24.6845,0	0/1:122:47,75:47:1673:75:2670:-203.817,0,-114.13	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:93:45,48:45:1597:48:1709:-126.098,0,-116.022	0/1:81:36,45:36:1296:45:1610:-120.717,0,-92.5605	0/1:57:30,27:30:1076:27:972:-70.6392,0,-79.9941	0/1:117:56,61:56:2004:61:2166:-159.983,0,-145.413	0/1:64:42,22:42:1493:22:792:-52.3398,0,-115.397	1/1:180:0,180:0:0:180:6393:-575.437,-54.1854,0	1/1:86:0,86:0:0:86:3080:-277.027,-25.8886,0
chr10	4565988	.	C	A	121830	PASS	AB=0.571323;ABP=541.049;AC=95;AF=0.505319;AN=188;AO=6958;CIGAR=1X;DP=12178;DPB=12178;DPRA=0;EPP=15025.4;EPPR=11288.2;GTI=1;LEN=1;MEANALT=1.14894;MQM=59.9394;MQMR=52.1546;NS=94;NUMALT=1;ODDS=99.6506;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246544;QR=186182;RO=5201;RPL=6958;RPP=15112.1;RPPR=11296.8;RPR=0;RUN=1;SAF=6948;SAP=15025.4;SAR=10;SRF=1;SRP=11288.2;SRR=5200;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:10,28:10:348:28:1000:-78.5068,0,-17.6938	0/1:247:115,132:115:4112:132:4682:-347.19,0,-292.163	0/1:356:192,164:192:6861:164:5788:-413.678,0,-499.979	0/1:186:98,88:98:3503:88:3070:-220.53,0,-256.311	0/1:67:27,40:27:968:40:1423:-108.187,0,-65.8761	0/1:64:28,36:28:1000:36:1266:-94.9752,0,-67.7304	0/1:153:58,95:58:2061:95:3360:-256.56,0,-137.143	0/1:144:72,72:72:2567:72:2567:-187.914,0,-184.254	0/1:85:30,55:30:1080:55:1960:-151.08,0,-71.1619	0/1:152:86,66:86:3072:66:2331:-164.294,0,-228.808	0/1:156:56,99:56:2004:99:3525:-270.44,0,-130.104	0/1:71:26,45:26:924:45:1579:-121.027,0,-61.4451	0/1:150:54,96:54:1927:96:3424:-263.219,0,-126.574	0/1:202:44,157:44:1576:157:5503:-434.538,0,-79.7366	0/1:129:53,76:53:1904:76:2681:-202.702,0,-130.263	0/1:128:40,88:40:1436:88:3108:-241.419,0,-88.0242	0/1:208:57,151:57:2040:151:5345:-418.367,0,-114.498	0/1:131:55,76:55:1972:76:2683:-202.27,0,-134.757	0/1:42:14,28:14:500:28:1000:-77.6721,0,-32.1034	0/1:144:69,75:69:2465:75:2667:-196.928,0,-177.115	0/1:152:87,65:87:3124:65:2277:-159.435,0,-233.361	0/1:108:37,71:37:1328:71:2498:-192.56,0,-87.1144	0/1:60:10,50:10:360:50:1752:-139.9,0,-13.1571	0/1:197:71,126:71:2536:126:4487:-344.695,0,-167.478	0/1:61:20,41:20:716:41:1449:-112.341,0,-46.0335	0/1:507:272,234:272:9764:234:8292:-593.599,0,-715.039	0/1:144:64,80:64:2296:80:2825:-210.914,0,-161.157	0/1:33:10,23:10:360:23:820:-64.1885,0,-22.7603	0/1:378:222,156:222:7946:156:5516:-382.78,0,-595.386	0/1:64:20,44:20:720:44:1584:-123.586,0,-45.0676	0/1:200:62,138:62:2220:138:4893:-380.319,0,-138.616	0/1:13:11,2:11:396:2:72:-2.92333,0,-31.967	0/1:12:9,3:9:320:3:100:-5.71808,0,-25.4633	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8012	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.60511	0/1:10:4,6:4:144:6:216:-16.7719,0,-10.2491	0/1:295:123,172:123:4404:172:6104:-460.658,0,-303.737	0/1:84:42,41:42:1512:41:1454:-105.799,0,-109.512	0/1:108:38,70:38:1368:70:2469:-189.952,0,-88.2782	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:114:67,47:67:2404:47:1634:-113.024,0,-180.011	0/1:46:18,28:18:648:28:1004:-76.8285,0,-44.0293	0/1:91:46,45:46:1652:45:1596:-116.534,0,-117.601	0/1:70:25,45:25:900:45:1590:-122.311,0,-58.6192	0/1:100:36,64:36:1283:64:2277:-175.089,0,-84.1795	0/1:74:26,48:26:917:48:1720:-132.809,0,-59.7487	0/1:195:99,96:99:3534:96:3378:-245.52,0,-254.443	0/1:272:157,114:157:5624:114:4028:-280.814,0,-419.279	0/1:105:49,56:49:1740:56:1961:-145.153,0,-122.71	0/1:198:107,91:107:3825:91:3239:-232.128,0,-277.599	0/1:159:53,106:53:1892:106:3747:-289.565,0,-122.17	0/1:9:3,6:3:104:6:212:-16.7155,0,-6.98772	0/1:111:47,64:47:1684:64:2256:-169.886,0,-116.534	0/1:78:30,48:30:1080:48:1728:-132.325,0,-72.4067	0/1:18:9,8:9:324:8:280:-20.103,0,-23.8961	0/1:231:118,110:118:4235:110:3898:-282.02,0,-308.188	0/1:37:5,32:5:176:32:1122:-90.1465,0,-4.95086	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5799	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.45703	0/1:94:33,61:33:1188:61:2153:-165.735,0,-77.5817	0/1:199:63,134:63:2264:134:4784:-371.055,0,-140.238	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.9287	0/1:99:60,39:60:2152:39:1404:-96.8573,0,-161.437	0/1:260:110,150:110:3915:150:5331:-401.646,0,-269.047	0/1:90:32,58:32:1144:58:2068:-159.298,0,-75.536	0/1:119:75,43:75:2688:43:1520:-101.212,0,-200.096	0/1:129:78,51:78:2800:51:1807:-124.075,0,-211.082	0/1:253:100,153:100:3571:153:5434:-413.027,0,-240.874	0/1:110:22,88:22:792:88:3123:-248.098,0,-36.0455	0/1:196:80,116:80:2868:116:4097:-309.917,0,-197.185	0/1:169:44,125:44:1568:125:4403:-345.572,0,-88.3007	0/1:70:17,53:17:608:53:1895:-149.755,0,-33.7292	0/1:181:67,114:67:2384:114:4045:-309.735,0,-158.579	0/1:113:35,78:35:1260:78:2788:-217.136,0,-78.9135	0/1:359:127,232:127:4533:232:8212:-631.018,0,-294.961	0/1:262:132,130:132:4720:130:4605:-335.734,0,-341.063	0/1:226:102,124:102:3648:124:4403:-328.413,0,-255.215	0/1:201:102,99:102:3660:99:3515:-256.055,0,-264.411	0/1:22:17,5:17:608:5:180:-9.9294,0,-47.0531	0/1:158:55,102:55:1976:102:3632:-279.465,0,-126.65	0/1:105:45,60:45:1616:60:2130:-160.359,0,-110.889	0/1:158:56,102:56:2008:102:3605:-276.868,0,-131.059	0/1:178:67,110:67:2395:110:3909:-298.361,0,-156.277	0/1:145:41,104:41:1468:104:3671:-286.932,0,-87.67	0/1:147:66,80:66:2372:80:2844:-211.889,0,-165.797	0/1:123:56,67:56:2008:67:2374:-176.887,0,-142.451	0/1:60:30,27:30:1080:27:955:-68.7675,0,-79.0907	0/1:69:25,44:25:900:44:1576:-121.36,0,-57.7842	0/1:65:22,43:22:780:43:1527:-118.155,0,-50.3783	0/1:76:22,54:22:788:54:1915:-149.748,0,-47.8309	0/1:110:26,84:26:928:84:2979:-235.231,0,-50.3559	0/1:30:19,11:19:684:11:392:-26.5892,0,-52.635	0/1:168:95,73:95:3396:73:2578:-181.538,0,-252.382	0/1:194:78,116:78:2800:116:4134:-313.845,0,-190.222
chr10	4566697	.	TTTTT	TTTTA,CTTTA	118239	PASS	AB=0.495435,0.500198;ABP=3.46632,3.01116;AC=142,44;AF=0.763441,0.236559;AN=186;AO=4194,1271;CIGAR=4M1X,1X3M1X;DP=5485;DPB=5485;DPRA=0,0.997848;EPP=9032.16,2762.95;EPPR=16.0391;GTI=0;LEN=1,5;MEANALT=1.67742,2.22449;MQM=59.9723,59.7962;MQMR=60;NS=93;NUMALT=2;ODDS=0.365965;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=150009,44952;QR=176;RO=6;RPL=4186,1271;RPP=9040.81,2762.95;RPPR=16.0391;RPR=8,0;RUN=1,1;SAF=1,0;SAP=9101.48,2762.95;SAR=4193,1271;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:10:0,7,3:0:0:7,3:252,104:-29.3711,-8.79988,-6.69267,-20.9217,0,-20.0187	1/1:89:0,89,0:0:0:89,0:3183,0:-286.693,-26.7917,0,-286.693,-26.7917,-286.693	1/1:76:0,75,0:0:0:75,0:2654,0:-238.744,-22.5773,0,-238.744,-22.5773,-238.744	1/2:89:0,45,43:0:0:45,43:1616,1536:-257.203,-125.376,-111.829,-131.97,0,-119.026	1/2:33:0,16,17:0:0:16,17:576,606:-96.7545,-49.7541,-44.9377,-47.3585,0,-42.241	1/2:36:0,18,18:0:0:18,18:644,641:-105.116,-52.6012,-47.1826,-52.8721,0,-47.4535	1/2:73:0,22,51:0:0:22,51:788,1799:-211.095,-146.829,-140.207,-64.6221,0,-49.2696	1/2:70:0,38,31:0:0:38,31:1368,1081:-199.678,-88.0475,-76.6084,-111.768,0,-102.436	1/2:56:0,23,32:0:0:23,32:805,1119:-156.517,-91.0228,-84.0991,-65.4844,0,-55.8514	1/2:63:0,30,32:0:0:30,32:1076,1134:-180.139,-92.3737,-83.3428,-87.7622,0,-78.1292	1/1:59:0,59,0:0:0:59,0:2108,0:-189.989,-17.7608,0,-189.989,-17.7608,-189.989	1/2:67:1,30,36:1:31:30,36:1072,1268:-187.884,-100.779,-94.2351,-84.9631,0,-76.613	1/1:69:0,69,0:0:0:69,0:2478,0:-223.273,-20.7711,0,-223.273,-20.7711,-223.273	1/1:51:0,50,1:0:0:50,1:1784,33:-160.51,-15.0515,0,-157.842,-12.0534,-157.541	1/1:64:0,64,0:0:0:64,0:2300,0:-207.261,-19.2659,0,-207.261,-19.2659,-207.261	1/1:46:1,45,0:1:26:45,0:1616,0:-143.129,-11.2476,0,-143.43,-13.5464,-145.466	1/1:64:1,63,0:1:28:63,0:2252,0:-200.143,-16.4662,0,-200.444,-18.9649,-202.661	1/1:53:0,53,0:0:0:53,0:1900,0:-171.278,-15.9546,0,-171.278,-15.9546,-171.278	1/2:55:0,33,22:0:0:33,22:1169,771:-156.774,-61.5397,-51.6057,-95.5813,0,-88.9586	1/2:101:0,55,45:0:0:55,45:1972,1600:-291.264,-130.422,-113.865,-160.887,0,-147.341	1/2:123:0,73,49:0:0:73,49:2582,1716:-349.909,-139.608,-117.633,-210.292,0,-195.542	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/1:24:0,24,0:0:0:24,0:855,0:-77.2417,-7.22472,0,-77.2417,-7.22472,-77.2417	1/2:58:0,39,19:0:0:39,19:1385,648:-165.781,-52.9193,-41.1792,-113.207,0,-107.487	1/1:140:0,140,0:0:0:140,0:4982,0:-448.457,-42.1442,0,-448.457,-42.1442,-448.457	1/2:136:0,83,52:0:0:83,52:2957,1840:-390.889,-149.866,-124.881,-241.017,0,-225.364	1/2:30:0,16,14:0:0:16,14:576,496:-87.7616,-40.7599,-35.9434,-47.3585,0,-43.1441	1/1:162:0,162,0:0:0:162,0:5785,0:-520.736,-48.7669,0,-520.736,-48.7669,-520.736	1/2:48:0,25,23:0:0:25,23:896,816:-139.916,-66.8378,-59.312,-73.4346,0,-66.5109	1/1:72:0,72,0:0:0:72,0:2556,0:-230.289,-21.6742,0,-230.289,-21.6742,-230.289	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:14:0,2,12:0:0:2,12:72,431:-41.3933,-35.5183,-34.9163,-6.23466,0,-2.6223	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	.:.:.:.:.:.:.:.	1/2:5:0,2,3:0:0:2,3:72,99:-14.2203,-8.33349,-7.73143,-6.23466,0,-5.33157	1/1:170:0,169,0:0:0:169,0:6047,0:-543.973,-50.8741,0,-543.973,-50.8741,-543.973	1/2:67:0,35,32:0:0:35,32:1260,1123:-194.556,-91.7413,-81.2053,-103.169,0,-93.5365	1/2:82:0,40,42:0:0:40,42:1430,1488:-238.171,-121.57,-109.529,-116.956,0,-104.313	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:53:0,31,22:0:0:31,22:1089,775:-152.053,-63.4212,-54.0892,-88.983,0,-82.3604	1/2:42:0,19,23:0:0:19,23:684,809:-122.021,-66.2061,-60.4865,-56.1708,0,-49.2471	1/2:40:0,17,23:0:0:17,23:612,811:-116.308,-66.369,-61.2515,-50.2959,0,-43.3722	1/2:89:0,40,49:0:0:40,49:1432,1742:-259.085,-142.305,-130.264,-117.136,0,-102.386	1/1:70:0,70,0:0:0:70,0:2480,0:-223.452,-21.0721,0,-223.452,-21.0721,-223.452	1/2:45:0,19,26:0:0:19,26:680,929:-131.554,-76.1017,-70.3821,-55.8096,0,-47.9828	1/1:78:0,78,0:0:0:78,0:2808,0:-252.959,-23.4803,0,-252.959,-23.4803,-252.959	1/1:96:0,96,0:0:0:96,0:3448,0:-310.532,-28.8989,0,-310.532,-28.8989,-310.532	1/2:42:0,22,20:0:0:22,20:788,715:-122.922,-58.657,-52.0344,-64.6221,0,-58.6015	1/1:86:0,86,0:0:0:86,0:3049,0:-274.637,-25.8886,0,-274.637,-25.8886,-274.637	1/2:23:0,8,15:0:0:8,15:288,525:-66.5674,-43.0646,-40.6563,-23.8592,0,-19.3437	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/2:61:0,35,26:0:0:35,26:1260,914:-177.558,-74.7439,-64.2079,-103.169,0,-95.3427	1/1:15:0,15,0:0:0:15,0:525,0:-47.5781,-4.51545,0,-47.5781,-4.51545,-47.5781	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:70:0,64,5:0:0:64,5:2304,180:-207.261,-19.2659,0,-192.574,-4.57883,-191.068	1/2:27:0,11,16:0:0:11,16:396,569:-79.0392,-46.7259,-43.4145,-32.6714,0,-27.8549	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0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chr10	4568680	.	G	A	21080.7	PASS	AB=0.470353;ABP=23.9975;AC=45;AF=0.244565;AN=184;AO=1305;CIGAR=1X;DP=5796;DPB=5796;DPRA=1.07227;EPP=2836.78;EPPR=9744.24;GTI=2;LEN=1;MEANALT=1.02;MQM=59.9693;MQMR=59.9987;NS=92;NUMALT=1;ODDS=4.7542;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46526;QR=159849;RO=4490;RPL=0;RPP=2836.78;RPPR=9744.24;RPR=1305;RUN=1;SAF=0;SAP=2836.78;SAR=1305;SRF=0;SRP=9752.92;SRR=4490;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:19,9:19:676:9:320:-20.7135,0,-52.7392	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:115:115,0:115:4083:0:0:0,-34.6184,-367.656	0/1:106:51,55:51:1800:55:1972:-145.846,0,-130.37	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:27:10,17:10:360:17:603:-46.4717,0,-24.6165	0/1:51:29,22:29:1040:22:788:-55.8923,0,-78.5618	0/1:68:34,34:34:1211:34:1216:-89.2765,0,-88.8255	0/1:71:29,42:29:1023:42:1494:-113.381,0,-71.0086	0/1:76:32,44:32:1148:44:1566:-118.352,0,-80.7516	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:76:35,41:35:1252:41:1453:-108.187,0,-90.1068	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:50:50,0:50:1760:0:0:0,-15.0515,-158.681	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:12:8,4:8:284:4:135:-8.87015,0,-22.291	0/1:118:59,59:59:2120:59:2120:-155.547,0,-155.547	0/1:117:61,56:61:2159:56:2003:-145.322,0,-159.356	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	0/0:69:68,1:68:2412:1:32:0,-17.5718,-214.135	0/0:77:75,2:75:2675:2:72:0,-16.3426,-234.158	0/1:31:16,15:16:563:15:540:-39.6046,0,-41.6672	0/0:156:156,0:156:5558:0:0:0,-46.9607,-500.346	0/1:167:99,68:99:3534:68:2420:-167.785,0,-267.997	0/1:29:11,18:11:396:18:635:-48.7471,0,-27.2529	0/0:180:180,0:180:6438:0:0:0,-54.1854,-579.506	0/1:74:37,37:37:1324:37:1318:-96.6296,0,-97.1859	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/1:13:8,5:8:288:5:180:-12.634,0,-22.354	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:164:164,0:164:5817:0:0:0,-49.3689,-523.643	0/1:65:41,24:41:1472:24:864:-58.5156,0,-113.209	0/1:32:19,13:19:671:13:460:-32.1024,0,-51.0828	.:.:.:.:.:.:.:.	0/1:77:43,34:43:1525:34:1216:-86.5673,0,-114.362	0/1:24:14,10:14:500:10:356:-25.1565,0,-38.1115	0/1:64:41,23:41:1451:23:819:-54.7656,0,-111.619	0/1:60:40,20:40:1412:20:716:-46.7059,0,-109.313	0/0:33:33,0:33:1141:0:0:0,-9.93399,-102.993	0/1:66:42,24:42:1504:24:860:-57.8539,0,-115.787	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/1:57:34,23:34:1207:23:815:-56.5121,0,-91.7766	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.861	0/1:154:79,75:79:2813:75:2681:-195.176,0,-207.05	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:50:28,22:28:1004:22:792:-56.5542,0,-75.6244	0/0:73:73,0:73:2602:0:0:0,-21.9752,-234.428	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:101:101,0:101:3577:0:0:0,-30.404,-322.139	0/1:34:24,10:24:856:10:356:-22.1462,0,-67.1261	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:36:21,15:21:752:15:540:-38.0995,0,-57.1692	0/0:60:60,0:60:2123:0:0:0,-18.0618,-191.336	.:.:.:.:.:.:.:.	0/1:160:78,82:78:2758:82:2911:-214.059,0,-200.298	0/0:127:127,0:127:4530:0:0:0,-38.2308,-407.868	0/1:48:29,19:29:1040:19:680:-47.0797,0,-79.4649	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/1:148:75,73:75:2674:73:2577:-187.625,0,-196.352	0/0:146:144,2:144:5138:2:63:0,-37.9672,-456.575	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/0:68:67,1:67:2387:1:36:0,-16.8718,-211.489	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:99:99,0:99:3492:0:0:0,-29.802,-314.493	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.949	0/0:70:69,1:69:2459:1:36:0,-17.4738,-217.966	0/0:98:98,0:98:3484:0:0:0,-29.5009,-313.771	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:68:66,2:66:2342:2:72:0,-13.6333,-204.202	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/1:48:23,25:23:815:25:896:-66.5109,0,-59.2213	0/1:152:86,66:86:3092:66:2363:-167.171,0,-232.75	0/0:51:51,0:51:1801:0:0:0,-15.3525,-162.37	0/0:50:50,0:50:1768:0:0:0,-15.0515,-159.401	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:98:54,44:54:1935:44:1560:-111.189,0,-144.925	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:57:28,29:28:995:29:1023:-75.223,0,-72.7053	0/1:59:26,33:26:921:33:1176:-88.387,0,-65.4444	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:64:34,30:34:1192:30:1061:-76.5339,0,-88.3165	0/1:70:28,41:28:989:41:1470:-111.465,0,-68.1914	0/0:78:78,0:78:2776:0:0:0,-23.4803,-250.079	0/0:99:99,0:99:3523:0:0:0,-29.802,-317.281
chr10	4572393	.	T	C	30810.6	PASS	AB=0.565864;ABP=122.005;AC=45;AF=0.239362;AN=188;AO=1790;CIGAR=1X;DP=6358;DPB=6358;DPRA=1.10223;EPP=3863.93;EPPR=9904.93;GTI=2;LEN=1;MEANALT=1;MQM=59.8966;MQMR=59.9974;NS=94;NUMALT=1;ODDS=0.779957;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63378;QR=163442;RO=4568;RPL=2;RPP=3872.59;RPPR=9904.93;RPR=1788;RUN=1;SAF=1;SAP=3881.26;SAR=1789;SRF=0;SRP=9922.3;SRR=4568;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:16,32:16:557:32:1133:-87.8266,0,-36.0061	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.583	0/1:181:66,115:66:2359:115:4043:-309.536,0,-158.082	0/1:48:26,22:26:936:22:788:-56.7954,0,-70.11	0/1:25:9,16:9:324:16:562:-43.2953,0,-21.9801	0/1:22:6,16:6:216:16:563:-44.3765,0,-13.1679	0/1:113:47,66:47:1675:66:2351:-177.813,0,-117.02	0/1:110:34,76:34:1224:76:2687:-208.644,0,-77.3537	0/1:41:25,16:25:891:16:567:-39.0185,0,-68.1665	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:107:62,45:62:2219:45:1587:-110.909,0,-167.764	0/0:80:80,0:80:2855:0:0:0,-24.0824,-257.188	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:21:15,6:15:536:6:201:-12.0954,0,-42.2532	0/1:86:35,51:35:1256:51:1819:-138.102,0,-87.4567	0/1:93:64,29:64:2300:29:1014:-63.5742,0,-179.265	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:20:17,3:17:603:3:108:-4.05457,0,-48.5789	0/1:49:21,28:21:756:28:995:-75.1134,0,-53.6168	0/0:170:170,0:170:6072:0:0:0,-51.1751,-546.582	0/1:148:73,75:73:2616:75:2635:-192.824,0,-191.135	0/1:26:13,13:13:460:13:464:-34.2707,0,-33.9086	0/0:172:172,0:172:6131:0:0:0,-51.7772,-551.887	0/1:68:29,39:29:1028:39:1375:-103.42,0,-72.363	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:15:7,8:7:243:8:288:-21.752,0,-17.692	0/0:239:239,0:239:8575:0:0:0,-71.9462,-771.744	0/1:105:45,60:45:1620:60:2116:-159.088,0,-114.482	0/1:48:17,31:17:612:31:1100:-84.8608,0,-40.964	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:61:30,31:30:1076:31:1097:-80.6736,0,-78.79	0/1:29:14,15:14:504:15:532:-39.4832,0,-36.9682	0/1:151:55,96:55:1958:96:3413:-261.929,0,-131.039	0/1:53:30,23:30:1072:23:813:-57.5345,0,-80.8379	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:62:25,37:25:891:37:1307:-99.2669,0,-61.8449	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.526	0/0:144:143,1:143:5140:1:36:0,-39.75,-459.141	0/1:64:29,35:29:1040:35:1248:-93.3589,0,-74.6484	0/0:161:161,0:161:5752:0:0:0,-48.4658,-517.795	0/1:71:18,53:18:640:53:1883:-148.373,0,-36.5562	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:48:16,32:16:576:32:1144:-88.8201,0,-37.7255	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:101:101,0:101:3623:0:0:0,-30.404,-326.274	0/1:46:16,30:16:572:30:1076:-83.3055,0,-37.966	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:13:7,6:7:252:6:183:-12.8561,0,-19.1156	0/1:54:19,35:19:665:35:1252:-96.7295,0,-43.9172	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:195:68,127:68:2440:127:4508:-347.184,0,-161.154	0/0:127:127,0:127:4532:0:0:0,-38.2308,-408.046	0/1:41:10,31:10:360:31:1096:-86.6077,0,-20.4021	0/0:52:51,1:51:1817:1:36:0,-12.0553,-160.211	0/1:127:39,88:39:1400:88:3130:-243.684,0,-88.0684	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:55:55,0:55:1948:0:0:0,-16.5566,-175.593	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:94:94,0:94:3353:0:0:0,-28.2968,-301.986	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/0:47:46,1:46:1648:1:36:0,-10.5501,-145.01	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/1:60:41,19:41:1476:19:680:-43.4674,0,-115.057	0/1:172:66,106:66:2359:106:3794:-289.88,0,-160.791	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:132:68,64:68:2444:64:2244:-162.486,0,-180.479	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:90:50,40:50:1792:40:1400:-99.2014,0,-134.47	0/1:78:37,41:37:1324:41:1440:-106.396,0,-95.9818	0/1:31:16,15:16:572:15:540:-39.6046,0,-42.4815	0/1:96:51,45:51:1828:45:1585:-114.039,0,-135.902	0/1:93:33,60:33:1176:60:2117:-162.802,0,-78.152	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:125:125,0:125:4475:0:0:0,-37.6287,-402.919
chr10	4572420	.	G	T	30085.8	PASS	AB=0.561251;ABP=104.094;AC=45;AF=0.239362;AN=188;AO=1744;CIGAR=1X;DP=6293;DPB=6293;DPRA=1.10913;EPP=3720.89;EPPR=9865.84;GTI=1;LEN=1;MEANALT=1.0625;MQM=59.883;MQMR=59.9974;NS=94;NUMALT=1;ODDS=0.0255822;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61622;QR=161901;RO=4542;RPL=1737;RPP=3729.5;RPPR=9865.84;RPR=7;RUN=1;SAF=1;SAP=3781.38;SAR=1743;SRF=0;SRP=9865.84;SRR=4542;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:17,31:17:599:31:1088:-83.7777,0,-39.7887	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:173:65,106:65:2327:106:3730:-284.059,0,-157.873	0/1:48:26,22:26:920:22:769:-55.0792,0,-68.6676	0/1:23:9,14:9:324:14:496:-38.0502,0,-22.5822	0/1:23:6,17:6:216:17:608:-48.1283,0,-12.8668	0/1:115:48,67:48:1704:67:2388:-180.54,0,-119.027	0/1:104:35,69:35:1248:69:2419:-186.392,0,-81.3177	0/1:42:25,17:25:891:17:601:-41.7751,0,-67.8655	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:107:61,46:61:2171:46:1640:-115.488,0,-163.446	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.191	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.225	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	0/1:88:34,54:34:1202:54:1921:-146.674,0,-81.9936	0/1:93:63,30:63:2239:30:1031:-65.0982,0,-173.778	0/0:80:80,0:80:2863:0:0:0,-24.0824,-257.907	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:19:17,2:17:596:2:68:-0.738138,0,-48.2482	0/1:47:20,27:20:712:27:952:-71.8459,0,-50.2582	0/0:174:174,0:174:6200:0:0:0,-52.3792,-558.098	0/1:145:70,75:70:2504:75:2680:-197.75,0,-181.963	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	0/0:172:172,0:172:6108:0:0:0,-51.7772,-549.825	0/1:67:29,38:29:1019:38:1340:-100.573,0,-71.8523	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/1:12:4,8:4:144:8:280:-21.9269,0,-9.70126	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:8:8,0:8:269:0:0:0,-2.40824,-24.5361	0/1:15:7,8:7:248:8:265:-19.6566,0,-18.1487	0/0:240:239,0:239:8548:0:0:0,-71.9462,-768.96	0/1:103:45,58:45:1616:58:2045:-153.304,0,-114.724	0/1:49:17,32:17:612:32:1132:-87.4381,0,-40.663	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:62:30,32:30:1072:32:1128:-83.1616,0,-78.1286	0/1:30:14,16:14:500:16:553:-41.0631,0,-36.3053	0/1:142:54,87:54:1932:87:3084:-234.985,0,-131.352	0/1:52:30,22:30:1068:22:780:-54.8695,0,-80.7785	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/1:57:24,33:24:864:33:1164:-87.9082,0,-60.9239	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.157	0/0:145:144,1:144:5122:1:36:0,-40.0511,-457.527	0/1:60:30,30:30:1076:30:1072:-78.7307,0,-79.0911	0/0:163:163,0:163:5815:0:0:0,-49.0679,-523.465	0/1:70:17,53:17:608:53:1854:-146.064,0,-33.9799	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:47:16,31:16:563:31:1097:-84.8896,0,-36.8508	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:105:105,0:105:3725:0:0:0,-31.6081,-335.452	0/1:44:16,28:16:567:28:999:-76.9792,0,-38.1154	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/1:50:19,31:19:676:31:1069:-81.464,0,-46.1165	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.823	0/1:3:1,2:1:36:2:53:-4.13121,0,-2.69518	0/1:197:68,129:68:2415:129:4546:-350.008,0,-158.303	0/0:128:128,0:128:4568:0:0:0,-38.5318,-411.287	0/1:40:10,30:10:347:30:1056:-83.3097,0,-19.5224	0/0:51:51,0:51:1812:0:0:0,-15.3525,-163.362	0/1:120:36,84:36:1292:84:2943:-228.981,0,-80.4602	0/0:83:82,1:82:2910:1:36:0,-21.3872,-258.537	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:42:42,0:42:1474:0:0:0,-12.6433,-132.953	0/0:94:94,0:94:3351:0:0:0,-28.2968,-301.807	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.517	0/0:46:44,1:44:1572:1:36:0,-10.3079,-138.173	0/0:76:75,0:75:2688:0:0:0,-22.5772,-241.805	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/1:58:40,18:40:1419:18:632:-39.747,0,-110.529	0/1:172:67,105:67:2387:105:3732:-284.304,0,-163.31	0/0:71:71,0:71:2518:0:0:0,-21.3731,-226.872	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:65:65,0:65:2314:0:0:0,-19.5669,-208.519	0/1:130:68,62:68:2427:62:2212:-160.211,0,-179.551	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/1:90:50,40:50:1792:40:1419:-100.915,0,-134.47	0/1:78:35,43:35:1239:43:1544:-115.755,0,-88.3333	0/1:32:16,16:16:576:16:560:-41.0958,0,-42.542	0/1:96:51,45:51:1811:45:1600:-115.391,0,-134.372	0/1:90:33,57:33:1171:57:2032:-156.059,0,-78.604	0/0:70:69,0:69:2442:0:0:0,-20.7711,-219.675	0/0:123:123,0:123:4399:0:0:0,-37.0267,-396.083
chr10	4572429	.	T	C	94257.7	PASS	AB=0.423692;ABP=164.404;AC=143;AF=0.760638;AN=188;AO=4517;CIGAR=1X;DP=6360;DPB=6360;DPRA=0;EPP=9811.55;EPPR=3992.01;GTI=3;LEN=1;MEANALT=1.02128;MQM=59.9962;MQMR=59.8566;NS=94;NUMALT=1;ODDS=1.1784;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=161448;QR=65927;RO=1841;RPL=4517;RPP=9811.55;RPPR=4000.69;RPR=0;RUN=1;SAF=0;SAP=9811.55;SAR=4517;SRF=1;SRP=3992.01;SRR=1840;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:33,17:33:1184:17:608:-40.0005,0,-91.8153	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:60:0,60:0:0:60:2143:-193.137,-18.0618,0	0/1:179:113,66:113:4041:66:2360:-158.774,0,-309.957	0/1:48:23,25:23:828:25:892:-66.1502,0,-60.3947	0/1:24:15,9:15:532:9:324:-22.2811,0,-40.7972	0/1:23:17,6:17:608:6:197:-11.1276,0,-48.1283	0/1:115:67,48:67:2385:48:1709:-119.475,0,-180.269	0/1:112:75,37:75:2692:37:1324:-85.7467,0,-207.864	0/1:41:17,24:17:612:24:860:-65.3796,0,-43.0712	1/1:39:0,39:0:0:39:1369:-123.506,-11.7402,0	0/1:108:47,61:47:1688:61:2184:-164.315,0,-119.506	1/1:77:0,77:0:0:77:2747:-247.472,-23.1793,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:82:0,82:0:0:82:2934:-264.293,-24.6845,0	1/1:32:0,32:0:0:32:1136:-102.549,-9.63296,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	0/1:20:5,15:5:180:15:540:-42.9159,0,-10.5315	0/1:88:55,33:55:1965:33:1180:-80.0174,0,-150.633	0/1:94:31,63:31:1108:63:2249:-174.375,0,-71.7342	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	1/1:55:0,55:0:0:55:1960:-176.675,-16.5567,0	0/1:20:3,17:3:108:17:612:-49.3928,0,-4.05457	0/1:50:29,21:29:1029:21:756:-53.3157,0,-77.8687	1/1:169:0,169:0:0:169:6033:-543.074,-50.8741,0	0/1:145:75,70:75:2643:70:2496:-181.243,0,-194.418	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	1/1:170:0,170:0:0:170:6088:-548.021,-51.1751,0	0/1:66:40,26:40:1440:26:936:-64.6915,0,-109.872	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:15:8,6:8:288:6:216:-15.2163,0,-21.6932	1/1:238:0,238:0:0:238:8524:-767.157,-71.6451,0	0/1:106:62,44:62:2213:44:1572:-109.862,0,-167.513	0/1:50:33,17:33:1184:17:612:-40.3619,0,-91.8168	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:61:32,29:32:1144:29:1040:-75.5515,0,-84.8996	0/1:30:16,14:16:576:14:499:-36.2147,0,-43.1441	0/1:157:101,56:101:3616:56:1992:-132.291,0,-278.384	0/1:53:24,29:24:864:29:1040:-77.9598,0,-62.128	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	0/1:63:38,25:38:1364:25:892:-61.6348,0,-104.096	1/1:79:0,79:0:0:79:2817:-253.769,-23.7814,0	1/1:143:1,142:1:36:142:5088:-454.465,-39.449,0	0/1:64:35,29:35:1256:29:1040:-74.6484,0,-94.0794	1/1:161:0,161:0:0:161:5772:-519.594,-48.4658,0	0/1:73:56,17:56:2012:17:600:-32.354,0,-159.378	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:48:33,15:33:1184:15:540:-34.4871,0,-92.4189	1/1:32:0,32:0:0:32:1140:-102.906,-9.63296,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:102:0,102:0:0:102:3656:-329.244,-30.7051,0	0/1:47:31,16:31:1116:16:557:-36.3072,0,-86.6033	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:57:38,19:38:1360:19:680:-44.3705,0,-105.542	1/1:91:0,91:0:0:91:3260:-293.62,-27.3937,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:192:128,64:128:4558:64:2296:-149.103,0,-352.587	1/1:124:0,124:0:0:124:4441:-399.859,-37.3277,0	0/1:41:31,10:31:1116:10:356:-20.039,0,-88.4095	1/1:50:1,48:1:36:48:1715:-151.037,-11.512,0	0/1:131:92,39:92:3300:39:1381:-85.1527,0,-257.772	1/1:82:0,82:0:0:82:2913:-262.404,-24.6845,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	1/1:55:0,55:0:0:55:1953:-176.044,-16.5567,0	1/1:41:0,41:0:0:41:1460:-131.695,-12.3422,0	1/1:94:0,94:0:0:94:3345:-301.268,-28.2968,0	1/1:80:0,80:0:0:80:2862:-257.817,-24.0824,0	1/1:47:1,46:1:36:46:1652:-145.37,-10.5501,0	1/1:76:0,76:0:0:76:2727:-245.672,-22.8783,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	0/1:60:20,40:20:720:40:1432:-111.098,0,-47.067	0/1:177:110,67:110:3941:67:2376:-160.814,0,-301.597	1/1:72:0,72:0:0:72:2572:-231.73,-21.6742,0	1/1:54:0,54:0:0:54:1931:-174.066,-16.2556,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	0/1:133:65,68:65:2336:68:2418:-177.838,0,-170.462	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:90:40,50:40:1440:50:1792:-134.469,0,-102.805	0/1:77:43,34:43:1544:34:1220:-86.9275,0,-116.056	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/1:99:48,51:48:1728:51:1811:-133.469,0,-125.975	0/1:94:61,33:61:2192:33:1172:-77.4907,0,-169.249	1/1:70:0,70:0:0:70:2479:-223.362,-21.0721,0	1/1:124:0,124:0:0:124:4456:-401.209,-37.3277,0
chr10	4669686	.	C	T	76076.3	PASS	AB=0.439151;ABP=83.3461;AC=142;AF=0.755319;AN=188;AO=3657;CIGAR=1X;DP=5077;DPB=5077;DPRA=27.2849;EPP=7944.08;EPPR=3017.41;GTI=2;LEN=1;MEANALT=1;MQM=59.9669;MQMR=60;NS=94;NUMALT=1;ODDS=0.473581;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130648;QR=50794;RO=1420;RPL=3657;RPP=7944.08;RPPR=3026;RPR=0;RUN=1;SAF=0;SAP=7944.08;SAR=3657;SRF=1;SRP=3077.82;SRR=1419;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:21,17:21:752:17:604:-43.2515,0,-56.5671	1/1:57:0,57:0:0:57:2029:-182.881,-17.1587,0	1/1:59:0,59:0:0:59:2117:-190.798,-17.7608,0	0/1:73:43,30:43:1514:30:1076:-75.1777,0,-114.574	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:49:30,19:30:1065:19:676:-46.4175,0,-81.4093	0/1:76:44,32:44:1580:32:1145:-80.4809,0,-119.613	0/1:87:51,36:51:1787:36:1288:-90.034,0,-134.917	0/1:54:17,37:17:600:37:1320:-102.844,0,-38.0736	0/1:80:56,24:56:2016:24:849:-52.6454,0,-157.63	1/1:31:0,31:0:0:31:1110:-100.209,-9.33193,0	0/1:56:30,26:30:1080:26:932:-67.3274,0,-80.6556	1/1:56:0,56:0:0:56:2011:-181.23,-16.8577,0	1/1:49:0,49:0:0:49:1750:-157.782,-14.7505,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:25:15,10:15:540:10:360:-25.2186,0,-41.4108	0/1:90:57,33:57:2039:33:1169:-78.4226,0,-156.689	0/1:73:37,36:37:1324:36:1296:-94.9687,0,-97.4869	1/1:51:0,51:0:0:51:1787:-161.106,-15.3525,0	1/1:49:0,49:0:0:49:1745:-157.332,-14.7505,0	1/1:106:8,98:8:284:98:3500:-289.292,-6.00583,0	0/1:40:20,20:20:716:20:716:-52.7265,0,-52.7265	1/1:120:0,120:0:0:120:4285:-385.827,-36.1236,0	0/1:133:69,64:69:2461:64:2274:-164.882,0,-181.706	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	1/1:127:1,126:1:36:126:4490:-400.669,-34.6325,0	0/1:79:54,25:54:1940:25:873:-55.1032,0,-151.095	1/1:56:0,56:0:0:56:1976:-178.096,-16.8577,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:125:0,125:0:0:125:4482:-403.548,-37.6288,0	0/1:100:52,48:52:1860:48:1720:-124.983,0,-137.577	0/1:42:28,14:28:1004:14:504:-33.0548,0,-78.0326	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:81:40,41:40:1421:41:1472:-108.393,0,-103.802	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	0/1:79:40,39:40:1440:39:1389:-101.526,0,-106.116	0/1:36:18,18:18:648:18:648:-47.8148,0,-47.8148	1/1:44:1,43:1:36:43:1524:-133.85,-9.64705,0	0/1:58:30,28:30:1080:28:1008:-73.5766,0,-80.0535	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	1/1:79:0,79:0:0:79:2836:-255.476,-23.7814,0	0/1:82:55,27:55:1972:27:968:-62.7529,0,-153.07	1/1:58:0,58:0:0:58:2065:-186.119,-17.4597,0	0/1:87:45,42:45:1612:42:1497:-108.834,0,-119.18	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:88:62,26:62:2205:26:936:-58.0665,0,-172.223	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:56:2,54:2:72:54:1914:-165.697,-10.021,0	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:67:39,28:39:1388:28:1008:-70.8673,0,-105.05	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:69:44,25:44:1576:25:900:-60.5476,0,-121.36	1/1:77:0,77:0:0:77:2749:-247.651,-23.1793,0	0/1:59:29,30:29:1029:30:1076:-79.3921,0,-75.1604	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:68:38,30:38:1360:30:1080:-77.0432,0,-102.231	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:14:0,14:0:0:14:485:-43.977,-4.21442,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:139:0,139:0:0:139:4915:-442.503,-41.8432,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:88:0,88:0:0:88:3122:-281.205,-26.4906,0	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	1/1:65:0,65:0:0:65:2309:-208.069,-19.567,0	1/1:43:2,41:2:72:41:1470:-125.759,-6.10757,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:41:0,41:0:0:41:1461:-131.784,-12.3422,0	0/1:82:43,39:43:1544:39:1400:-101.615,0,-114.569	0/1:101:54,47:54:1944:47:1677:-120.811,0,-144.832	1/1:70:0,70:0:0:70:2501:-225.341,-21.0721,0	1/1:53:2,51:2:72:51:1832:-158.324,-9.11787,0	1/1:52:0,52:0:0:52:1850:-166.778,-15.6536,0	0/1:91:43,48:43:1529:48:1728:-128.412,0,-110.507	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:55:33,22:33:1184:22:792:-55.0408,0,-90.3117	0/1:52:27,25:27:972:25:900:-65.6675,0,-72.1443	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	0/1:51:25,26:25:900:26:936:-69.2069,0,-65.9685	0/1:31:17,14:17:612:14:504:-36.3662,0,-46.0815	1/1:34:0,34:0:0:34:1220:-110.106,-10.235,0	1/1:70:0,70:0:0:70:2486:-223.99,-21.0721,0
chr10	4669705	.	G	A	76507.7	PASS	AB=0.441954;ABP=76.1171;AC=141;AF=0.75;AN=188;AO=3665;CIGAR=1X;DP=5077;DPB=5077;DPRA=27.2849;EPP=7961.46;EPPR=3066.96;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.967;MQMR=60;NS=94;NUMALT=1;ODDS=0.0342899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131105;QR=50523;RO=1411;RPL=3665;RPP=7961.46;RPPR=3066.96;RPR=0;RUN=1;SAF=0;SAP=7961.46;SAR=3665;SRF=0;SRP=3066.96;SRR=1411;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:21,17:21:752:17:612:-43.9743,0,-56.5671	1/1:58:0,58:0:0:58:2088:-188.19,-17.4597,0	1/1:59:0,59:0:0:59:2105:-189.717,-17.7608,0	0/1:73:42,31:42:1504:31:1116:-78.7765,0,-113.679	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:48:29,19:29:1036:19:665:-45.7233,0,-79.1045	0/1:78:46,32:46:1644:32:1148:-80.1495,0,-124.768	0/1:88:50,37:50:1800:37:1308:-91.4704,0,-135.733	0/1:54:15,39:15:536:39:1385:-108.683,0,-32.3192	0/1:79:56,23:56:2004:23:828:-51.0627,0,-156.852	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	0/1:57:32,25:32:1139:25:892:-63.4272,0,-85.6597	1/1:57:0,57:0:0:57:2038:-183.649,-17.1587,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:33:1,32:1:36:32:1152:-100.392,-6.33572,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:25:15,10:15:540:10:360:-25.2186,0,-41.4108	0/1:88:56,32:56:2016:32:1144:-76.7789,0,-155.222	0/1:73:36,37:36:1288:37:1313:-96.4954,0,-94.2484	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:48:0,48:0:0:48:1709:-154.094,-14.4494,0	1/1:107:8,99:8:284:99:3548:-293.568,-6.30686,0	0/1:40:20,20:20:716:20:690:-50.3756,0,-52.7265	1/1:121:0,121:0:0:121:4341:-390.862,-36.4246,0	0/1:130:66,64:66:2368:64:2281:-166.416,0,-174.244	0/1:20:9,11:9:320:11:396:-29.9621,0,-23.1218	1/1:130:1,129:1:36:129:4628:-413.084,-35.5356,0	0/1:79:55,24:55:1968:24:864:-54.3012,0,-153.614	1/1:56:0,56:0:0:56:1997:-179.868,-16.8577,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:125:0,125:0:0:125:4473:-402.738,-37.6288,0	0/1:100:52,48:52:1856:48:1716:-124.623,0,-137.217	0/1:42:28,14:28:999:14:504:-33.0548,0,-77.5812	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:81:40,41:40:1432:41:1457:-107.041,0,-104.794	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	0/1:78:40,38:40:1436:38:1368:-99.9405,0,-106.057	0/1:36:19,17:19:671:17:600:-43.4921,0,-49.8787	1/1:42:0,42:0:0:42:1505:-135.743,-12.6433,0	0/1:59:31,28:31:1112:28:1008:-73.2756,0,-82.6306	1/1:74:0,74:0:0:74:2645:-238.295,-22.2762,0	1/1:77:0,77:0:0:77:2745:-247.289,-23.1793,0	0/1:82:55,27:55:1976:27:972:-63.1134,0,-153.43	1/1:58:0,58:0:0:58:2053:-185.04,-17.4597,0	0/1:86:45,41:45:1616:41:1476:-107.248,0,-119.841	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:87:60,27:60:2143:27:968:-61.2468,0,-166.947	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:57:2,55:2:72:55:1946:-168.576,-10.322,0	0/1:22:12,10:12:428:10:360:-26.1216,0,-32.2361	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:65:37,28:37:1305:28:1008:-71.4694,0,-98.1825	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:67:44,23:44:1561:23:828:-54.6728,0,-120.611	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:56:25,31:25:900:31:1112:-83.5337,0,-64.4633	1/1:36:0,36:0:0:36:1287:-116.133,-10.8371,0	0/1:68:37,31:37:1313:31:1097:-78.568,0,-97.9997	1/1:37:0,37:0:0:37:1302:-117.477,-11.1381,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:51:0,51:0:0:51:1810:-163.179,-15.3525,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:138:0,138:0:0:138:4947:-445.377,-41.5421,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:87:0,87:0:0:87:3089:-278.238,-26.1896,0	1/1:74:0,74:0:0:74:2656:-239.286,-22.2762,0	1/1:65:0,65:0:0:65:2325:-209.508,-19.567,0	1/1:42:2,40:2:68:40:1417:-121.368,-6.18555,0	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:83:43,40:43:1548:40:1425:-103.56,0,-114.628	0/1:100:54,46:54:1944:46:1648:-118.506,0,-145.133	1/1:74:1,73:1:36:73:2616:-232.089,-18.6779,0	1/1:52:1,51:1:36:51:1832:-161.563,-12.0553,0	1/1:53:0,53:0:0:53:1908:-171.995,-15.9546,0	0/1:91:44,47:44:1576:47:1688:-124.813,0,-114.738	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:57:36,21:36:1296:21:756:-51.2003,0,-99.7852	0/1:53:27,26:27:972:26:936:-68.6049,0,-71.8433	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/1:51:25,26:25:900:26:932:-68.8463,0,-65.9685	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	1/1:31:0,31:0:0:31:1102:-99.4893,-9.33193,0	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0
chr10	4678836	.	T	A	157894	PASS	AB=0.499267;ABP=3.02622;AC=143;AF=0.760638;AN=188;AO=5823;CIGAR=1X;DP=7538;DPB=7538;DPRA=0;EPP=70.3677;EPPR=3.01157;GTI=2;LEN=1;MEANALT=1.04255;MQM=57.191;MQMR=49.8784;NS=94;NUMALT=1;ODDS=2.23386;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=206817;QR=61136;RO=1711;RPL=22;RPP=12457.1;RPPR=3701.05;RPR=5801;RUN=1;SAF=3146;SAP=85.0366;SAR=2677;SRF=857;SRP=3.02172;SRR=854;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:18,24:18:648:24:826:-61.66,0,-43.7193	1/1:66:1,65:1:36:65:2312:-204.173,-16.2697,0	1/1:147:1,145:1:36:145:5148:-458.892,-40.8917,0	0/1:101:47,54:47:1670:54:1908:-141.492,0,-117.971	0/1:55:31,23:31:1112:23:824:-57.8015,0,-81.5808	0/1:26:11,15:11:396:15:536:-40.4579,0,-27.0068	0/1:71:38,32:38:1368:32:1144:-81.7139,0,-100.643	0/1:92:41,51:41:1464:51:1824:-136.048,0,-100.696	0/1:77:42,35:42:1485:35:1221:-86.9162,0,-107.172	0/1:67:34,33:34:1203:33:1170:-85.0179,0,-85.5975	1/1:84:0,84:0:0:84:3004:-270.442,-25.2865,0	0/1:185:86,99:86:3062:99:3502:-258.922,0,-209.994	1/1:128:0,128:0:0:128:4564:-409.864,-38.5318,0	1/1:142:0,142:0:0:142:5026:-451.709,-42.7463,0	1/1:115:0,115:0:0:115:4103:-368.672,-34.6185,0	1/1:126:0,126:0:0:126:4501:-404.403,-37.9298,0	1/1:150:0,150:0:0:150:5354:-481.445,-45.1545,0	1/1:91:0,91:0:0:91:3254:-291.757,-27.3937,0	0/1:95:62,33:62:2204:33:1172:-77.1002,0,-164.996	0/1:91:36,55:36:1288:55:1951:-148.027,0,-85.8115	0/1:80:41,39:41:1472:39:1388:-101.043,0,-104.844	1/1:20:0,20:0:0:20:716:-64.7537,-6.0206,0	1/1:55:0,55:0:0:55:1938:-174.306,-16.5567,0	0/1:60:6,54:6:216:54:1881:-151.395,0,-0.937898	0/1:30:15,15:15:532:15:536:-39.5097,0,-37.1822	1/1:135:0,135:0:0:135:4786:-430.756,-40.6391,0	0/1:134:63,71:63:2235:71:2526:-186.518,0,-155.113	0/1:65:30,35:30:1076:35:1248:-92.8304,0,-74.6719	1/1:99:0,99:0:0:99:3477:-312.599,-29.802,0	0/1:52:20,32:20:716:32:1140:-87.0843,0,-48.5602	1/1:81:0,80:0:0:80:2868:-257.955,-24.0824,0	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	0/1:9:2,7:2:72:7:237:-18.9358,0,-3.85426	1/1:5:0,5:0:0:5:176:-16.1517,-1.50515,0	1/1:4:0,4:0:0:4:140:-12.9278,-1.20412,0	0/1:8:1,7:1:36:7:252:-20.5959,0,-0.97936	1/1:302:0,302:0:0:302:10788:-970.371,-90.9111,0	0/1:32:19,13:19:676:13:455:-31.6253,0,-50.0466	0/1:109:59,50:59:2116:50:1788:-128.281,0,-153.727	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:102:56,46:56:1996:46:1627:-115.89,0,-145.861	0/1:49:22,27:22:783:27:972:-72.9698,0,-54.5323	0/1:95:55,40:55:1967:40:1401:-97.3396,0,-143.006	0/1:148:84,64:84:3008:64:2254:-158.286,0,-221.304	1/1:105:0,105:0:0:105:3735:-335.966,-31.6082,0	0/1:54:30,24:30:1076:24:845:-60.0416,0,-79.687	1/1:55:0,55:0:0:55:1934:-174.158,-16.5567,0	1/1:73:0,73:0:0:73:2584:-232.612,-21.9752,0	0/1:47:26,21:26:923:21:743:-52.9301,0,-65.7704	1/1:64:0,64:0:0:64:2284:-205.747,-19.2659,0	0/1:64:34,30:34:1216:30:1034:-73.9997,0,-89.2695	0/1:10:6,4:6:216:4:144:-10.2101,0,-16.4298	0/1:92:37,55:37:1332:55:1946:-146.865,0,-89.0644	1/1:30:0,30:0:0:30:1076:-97.1361,-9.0309,0	1/1:5:0,5:0:0:5:180:-16.5271,-1.50515,0	1/1:102:0,102:0:0:102:3599:-323.719,-30.7051,0	0/1:32:21,11:21:748:11:392:-25.9682,0,-56.2293	1/1:3:0,3:0:0:3:108:-10.0724,-0.90309,0	0/1:6:5,1:5:180:1:27:-0.893476,0,-14.6315	0/1:56:32,24:32:1152:24:848:-59.7096,0,-84.5555	1/1:176:0,176:0:0:176:6254:-561.885,-52.9813,0	0/1:2:1,1:1:36:1:36:-2.99362,0,-2.90064	0/1:78:28,50:28:1000:50:1764:-135.438,0,-66.2164	1/1:129:2,127:2:72:127:4521:-400.184,-32.1777,0	0/1:52:30,22:30:1076:22:788:-55.1711,0,-80.0706	1/1:42:0,42:0:0:42:1480:-133.426,-12.6433,0	0/1:92:42,50:42:1508:50:1759:-130.622,0,-106.017	1/1:61:0,61:0:0:61:2157:-194.284,-18.3628,0	1/1:67:0,67:0:0:67:2400:-215.986,-20.169,0	1/1:41:0,41:0:0:41:1427:-128.564,-12.3422,0	1/1:138:0,138:0:0:138:4916:-442.536,-41.5421,0	1/1:7:0,7:0:0:7:248:-22.6561,-2.10721,0	1/1:61:0,61:0:0:61:2136:-191.744,-18.3628,0	1/1:63:1,62:1:36:62:2224:-196.412,-15.5773,0	1/1:115:0,115:0:0:115:4070:-366.222,-34.6185,0	1/1:78:0,78:0:0:78:2758:-248.152,-23.4803,0	1/1:79:0,79:0:0:79:2801:-251.311,-23.7814,0	1/1:63:0,63:0:0:63:2237:-201.367,-18.9649,0	1/1:5:0,5:0:0:5:176:-16.1567,-1.50515,0	1/1:75:0,75:0:0:75:2665:-239.721,-22.5773,0	0/1:66:39,27:39:1400:27:956:-66.1865,0,-101.603	0/1:122:68,54:68:2423:54:1911:-135.04,0,-176.686	1/1:130:0,130:0:0:130:4651:-418.508,-39.1339,0	1/1:138:0,138:0:0:138:4870:-438.129,-41.5421,0	1/1:141:0,141:0:0:141:5044:-453.707,-42.4452,0	0/1:221:117,104:117:4182:104:3721:-268.267,0,-305.57	1/1:58:0,58:0:0:58:2056:-184.612,-17.4597,0	0/1:113:45,68:45:1599:68:2432:-184.358,0,-106.952	0/1:114:54,60:54:1936:60:2145:-158.616,0,-135.154	0/1:71:32,39:32:1144:39:1400:-104.723,0,-79.2712	0/1:120:58,62:58:2069:62:2214:-162.755,0,-146.874	0/1:124:82,42:82:2939:42:1483:-96.0681,0,-223.466	1/1:50:0,50:0:0:50:1756:-158.19,-15.0515,0	1/1:219:0,219:0:0:219:7800:-701.254,-65.9256,0
chr10	4678845	.	A	G	37116.6	PASS	AB=0.495459;ABP=3.62172;AC=45;AF=0.239362;AN=188;AO=1697;CIGAR=1X;DP=7597;DPB=7597;DPRA=0.953615;EPP=3688;EPPR=12814.7;GTI=2;LEN=1;MEANALT=1;MQM=49.789;MQMR=57.0976;NS=94;NUMALT=1;ODDS=2.44953;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60554;QR=210891;RO=5900;RPL=841;RPP=3.29821;RPPR=72.9744;RPR=856;RUN=1;SAF=841;SAP=3.29821;SAR=856;SRF=3168;SRP=72.9744;SRR=2732;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:24,19:24:860:19:671:-45.2922,0,-64.6199	0/0:68:67,1:67:2404:1:36:0,-16.8718,-211.992	0/0:146:145,1:145:5177:1:36:0,-40.5628,-461.205	0/1:102:55,47:55:1980:47:1688:-119.217,0,-147.666	0/1:56:25,31:25:896:31:1112:-81.2655,0,-64.0321	0/1:27:16,11:16:576:11:396:-26.7058,0,-43.4332	0/1:69:33,36:33:1176:36:1283:-93.7876,0,-85.2543	0/1:91:51,40:51:1836:40:1436:-98.2432,0,-137.618	0/1:77:35,42:35:1247:42:1478:-106.254,0,-89.2593	0/1:63:33,30:33:1184:30:1063:-74.6916,0,-87.1741	0/0:86:86,0:86:3079:0:0:0,-25.8886,-277.185	0/1:182:97,85:97:3488:85:3023:-207.407,0,-258.506	0/0:129:128,1:128:4592:1:36:0,-35.2346,-408.752	0/0:143:143,0:143:5127:0:0:0,-43.0473,-460.554	0/0:114:114,0:114:4087:0:0:0,-34.3174,-367.132	0/0:124:124,0:124:4427:0:0:0,-37.3277,-398.087	0/0:147:147,0:147:5271:0:0:0,-44.2514,-473.702	0/0:90:90,0:90:3224:0:0:0,-27.0927,-289.241	0/1:95:34,61:34:1224:61:2175:-162.139,0,-81.7651	0/1:94:57,37:57:2021:37:1320:-87.7809,0,-153.456	0/1:79:39,40:39:1391:40:1421:-100.865,0,-101.619	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7537	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.625	0/1:60:54,6:54:1924:6:216:-0.937899,0,-155.267	0/1:31:16,15:16:576:15:531:-36.7248,0,-42.8014	0/0:132:132,0:132:4712:0:0:0,-39.736,-424.062	0/1:135:75,60:75:2672:60:2105:-144.083,0,-198.705	0/1:66:36,30:36:1292:30:1072:-73.8797,0,-96.4746	0/0:98:98,0:98:3485:0:0:0,-29.5009,-313.291	0/1:51:32,19:32:1148:19:684:-45.9107,0,-88.106	0/0:83:83,0:83:2933:0:0:0,-24.9855,-264.159	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0704	0/1:9:7,2:7:252:2:72:-3.85426,0,-20.3057	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5188	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2969	0/1:8:7,1:7:252:1:36:-0.97936,0,-20.5959	0/0:308:308,0:308:11037:0:0:0,-92.7172,-991.355	0/1:32:13,19:13:464:19:684:-50.696,0,-32.4395	0/1:110:52,58:52:1857:58:2080:-150.29,0,-133.752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:101:47,54:47:1668:54:1936:-140.473,0,-119.876	0/1:50:27,23:27:972:23:815:-57.1824,0,-72.4788	0/1:95:41,54:41:1460:54:1940:-140.394,0,-102.606	0/1:150:63,87:63:2251:87:3108:-230.242,0,-157.239	0/0:108:108,0:108:3865:0:0:0,-32.5112,-347.527	0/1:58:27,31:27:955:31:1108:-81.3051,0,-68.7357	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.58	0/0:77:77,0:77:2749:0:0:0,-23.1793,-247.127	0/1:47:21,26:21:756:26:929:-66.8378,0,-54.1019	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.707	0/1:65:30,35:30:1056:35:1251:-92.0508,0,-75.6281	0/1:10:4,6:4:144:6:216:-16.4298,0,-10.2101	0/1:91:54,37:54:1913:37:1332:-89.3655,0,-144.385	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3811	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1486	0/0:105:105,0:105:3739:0:0:0,-31.6081,-335.669	0/1:31:11,20:11:396:20:720:-53.9637,0,-26.6319	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.70055	0/1:6:1,5:1:21:5:180:-14.6315,0,-0.293734	0/1:54:23,31:23:824:31:1091:-80.0654,0,-58.1531	0/0:175:175,0:175:6267:0:0:0,-52.6802,-563.046	0/1:2:1,1:1:36:1:36:-2.90064,0,-2.99362	0/1:79:51,28:51:1812:28:1008:-66.5635,0,-139.407	0/0:130:128,2:128:4576:2:72:0,-32.4788,-405.128	0/1:54:24,30:24:856:30:1080:-79.8289,0,-60.8621	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.183	0/1:97:53,44:53:1885:44:1572:-109.128,0,-140.42	0/0:61:61,0:61:2161:0:0:0,-18.3628,-194.639	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.646	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.301	0/0:136:136,0:136:4876:0:0:0,-40.9401,-438.947	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0195	0/0:63:63,0:63:2256:0:0:0,-18.9649,-202.361	0/0:65:64,1:64:2288:1:36:0,-16.1793,-201.852	0/0:116:116,0:116:4160:0:0:0,-34.9195,-373.909	0/0:78:78,0:78:2772:0:0:0,-23.4803,-249.413	0/0:79:79,0:79:2820:0:0:0,-23.7814,-253.023	0/0:66:66,0:66:2343:0:0:0,-19.868,-210.906	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.749	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.137	0/1:64:25,39:25:892:39:1392:-101.588,0,-61.2366	0/1:122:54,68:54:1925:68:2409:-175.602,0,-135.372	0/0:132:132,0:132:4702:0:0:0,-39.736,-423.088	0/0:136:136,0:136:4848:0:0:0,-40.9401,-436.051	0/0:147:147,0:147:5272:0:0:0,-44.2514,-474.022	0/1:220:104,116:104:3740:116:4134:-301.48,0,-270.277	0/0:59:59,0:59:2088:0:0:0,-17.7608,-186.545	0/1:114:68,46:68:2440:46:1652:-111.399,0,-184.866	0/1:112:59,53:59:2111:53:1899:-132.324,0,-156.121	0/1:69:38,31:38:1364:31:1116:-77.2823,0,-102.156	0/1:120:62,58:62:2232:58:2045:-144.791,0,-164.207	0/1:122:43,79:43:1536:79:2823:-213.806,0,-101.066	0/0:74:74,0:74:2656:0:0:0,-22.2762,-235.351	0/0:223:223,0:223:7980:0:0:0,-67.1297,-717.426
chr10	4714516	.	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chr10	4717781	.	A	G	182176	PASS	AB=0.491019;ABP=6.71564;AC=143;AF=0.760638;AN=188;AO=8616;CIGAR=1X;DP=11328;DPB=11328;DPRA=0;EPP=18712.4;EPPR=5885.53;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9918;MQMR=59.9908;NS=94;NUMALT=1;ODDS=4.55124;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=307582;QR=96809;RO=2709;RPL=0;RPP=18712.4;RPPR=5885.53;RPR=8616;RUN=1;SAF=8616;SAP=18712.4;SAR=0;SRF=2709;SRP=5885.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:22,34:22:784:34:1195:-90.9969,0,-54.0262	1/1:196:0,195:0:0:195:6952:-625.387,-58.7009,0	1/1:167:0,167:0:0:167:5964:-536.869,-50.272,0	0/1:230:121,109:121:4344:109:3886:-280.699,0,-321.897	0/1:72:41,31:41:1468:31:1108:-78.3568,0,-110.742	0/1:59:42,17:42:1504:17:612:-37.6527,0,-117.894	0/1:129:58,71:58:2072:71:2533:-189.387,0,-147.918	0/1:217:118,99:118:4202:99:3533:-252.856,0,-313.036	0/1:73:40,33:40:1440:33:1184:-84.8931,0,-107.923	0/1:135:83,52:83:2957:52:1864:-127.4,0,-225.723	1/1:145:0,145:0:0:145:5150:-463.644,-43.6494,0	0/1:110:44,66:44:1584:66:2352:-178.825,0,-109.421	1/1:93:0,93:0:0:93:3342:-300.996,-27.9958,0	1/1:119:0,119:0:0:119:4209:-378.993,-35.8226,0	1/1:73:0,73:0:0:73:2606:-234.788,-21.9752,0	1/1:79:0,79:0:0:79:2830:-254.939,-23.7814,0	1/1:108:0,108:0:0:108:3863:-347.865,-32.5112,0	1/1:83:0,83:0:0:83:2959:-266.544,-24.9855,0	0/1:80:34,46:34:1201:46:1639:-123.716,0,-84.3113	0/1:271:133,138:133:4760:138:4940:-363.171,0,-346.979	0/1:179:90,89:90:3220:89:3168:-231.462,0,-236.138	1/1:109:0,109:0:0:109:3885:-349.844,-32.8123,0	1/1:66:1,65:1:36:65:2328:-206.182,-16.2697,0	1/1:110:1,109:1:32:109:3889:-347.005,-29.914,0	0/1:50:33,17:33:1184:17:608:-40.0005,0,-91.8168	1/1:371:3,368:3:104:368:13124:-1171.27,-101.979,0	0/1:221:124,97:124:4440:97:3453:-244.455,0,-333.243	0/1:43:20,23:20:720:23:820:-61.1782,0,-52.1845	1/1:219:0,219:0:0:219:7856:-707.065,-65.9256,0	0/1:156:77,79:77:2760:79:2820:-207.079,0,-201.681	1/1:135:0,135:0:0:135:4833:-435.123,-40.6391,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:217:0,217:0:0:217:7743:-696.902,-65.3235,0	0/1:261:112,149:112:3974:149:5296:-398.211,0,-279.281	0/1:114:47,67:47:1688:67:2385:-180.588,0,-117.89	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:165:85,80:85:3017:80:2845:-206.617,0,-222.091	0/1:57:30,27:30:1076:27:963:-69.8272,0,-79.9941	0/1:125:70,55:70:2508:55:1976:-140.486,0,-188.343	0/1:91:37,54:37:1332:54:1922:-145.862,0,-92.7887	1/1:70:0,70:0:0:70:2490:-224.353,-21.0721,0	0/1:81:49,32:49:1752:32:1148:-79.2464,0,-133.581	1/1:179:0,179:0:0:179:6386:-574.83,-53.8844,0	1/1:156:0,156:0:0:156:5579:-502.233,-46.9607,0	0/1:138:65,73:65:2332:73:2620:-194.505,0,-168.597	1/1:201:0,201:0:0:201:7216:-649.491,-60.507,0	0/1:200:115,85:115:4112:85:3037:-213.353,0,-310.059	0/1:13:6,7:6:208:7:252:-19.1156,0,-15.1457	0/1:193:106,87:106:3777:87:3103:-221.399,0,-282.03	1/1:55:0,55:0:0:55:1953:-176.044,-16.5567,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:149:2,147:2:72:147:5264:-466.869,-38.0167,0	0/1:41:32,9:32:1137:9:324:-17.1636,0,-90.2947	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:23:13,10:13:460:10:360:-25.8206,0,-34.8117	0/1:128:53,75:53:1881:75:2667:-201.586,0,-131.035	1/1:153:0,152:0:0:152:5414:-487.032,-45.7566,0	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:167:92,75:92:3280:75:2680:-191.173,0,-245.149	1/1:236:0,236:0:0:236:8411:-756.994,-71.0431,0	0/1:112:51,61:51:1828:61:2184:-163.111,0,-131.086	1/1:91:0,91:0:0:91:3233:-291.192,-27.3937,0	0/1:172:87,85:87:3090:85:3044:-222.413,0,-226.549	1/1:312:2,310:2:72:310:11056:-988.099,-87.0846,0	1/1:66:1,65:1:36:65:2311:-204.652,-16.2697,0	1/1:144:0,144:0:0:144:5144:-463.102,-43.3483,0	1/1:111:0,111:0:0:111:3975:-357.94,-33.4143,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:192:0,192:0:0:192:6852:-616.752,-57.7978,0	1/1:80:0,80:0:0:80:2859:-257.547,-24.0824,0	1/1:224:1,223:1:32:223:7980:-715.023,-64.2314,0	1/1:191:0,191:0:0:191:6827:-614.501,-57.4967,0	1/1:156:0,156:0:0:156:5544:-499.087,-46.9607,0	1/1:133:1,132:1:36:132:4704:-419.924,-36.4387,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:145:4,141:4:144:141:5048:-441.152,-30.3357,0	0/1:113:54,59:54:1928:59:2120:-157.052,0,-139.78	0/1:221:133,88:133:4760:88:3148:-217.018,0,-362.03	1/1:123:0,123:0:0:123:4395:-395.723,-37.0267,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	1/1:115:0,115:0:0:115:4104:-369.546,-34.6185,0	0/1:150:70,80:70:2508:80:2867:-213.112,0,-180.818	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:113:48,65:48:1724:65:2327:-175.673,0,-121.429	0/1:103:47,56:47:1684:56:1991:-148.457,0,-120.841	0/1:97:48,49:48:1720:49:1748:-128.404,0,-125.886	0/1:168:76,92:76:2724:92:3290:-245.741,0,-194.83	0/1:98:54,44:54:1917:44:1563:-111.46,0,-143.304	1/1:83:0,82:0:0:82:2906:-261.416,-24.6845,0	1/1:129:1,128:1:36:128:4543:-405.439,-35.2346,0
chr10	4718819	.	A	G	26404.2	PASS	AB=0.485827;ABP=8.73449;AC=44;AF=0.236559;AN=186;AO=1605;CIGAR=1X;DP=6850;DPB=6850;DPRA=1.21579;EPP=3488.22;EPPR=11392.4;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9968;NS=93;NUMALT=1;ODDS=1.1278;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57298;QR=188002;RO=5245;RPL=0;RPP=3488.22;RPPR=11392.4;RPR=1605;RUN=1;SAF=1605;SAP=3488.22;SAR=0;SRF=5245;SRP=11392.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:6,20:6:216:20:712:-56.5799,0,-11.9637	0/0:57:57,0:57:2018:0:0:0,-17.1587,-181.889	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.391	0/1:134:68,66:68:2440:66:2332:-169.801,0,-179.517	0/1:55:21,34:21:756:34:1220:-93.5502,0,-51.8106	0/1:31:12,19:12:432:19:684:-52.5584,0,-29.8893	0/1:77:38,39:38:1352:39:1384:-101.68,0,-98.8011	0/1:120:76,44:76:2728:44:1572:-105.648,0,-209.639	0/1:73:39,34:39:1400:34:1212:-87.4111,0,-104.324	0/1:63:29,34:29:1040:34:1204:-89.701,0,-74.9495	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/1:81:41,40:41:1476:40:1425:-104.163,0,-108.753	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:101:101,0:101:3609:0:0:0,-30.404,-325.015	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:49:19,30:19:684:30:1057:-80.6885,0,-47.1399	0/1:80:44,36:44:1561:36:1292:-92.5014,0,-116.697	0/1:103:62,41:62:2224:41:1472:-101.77,0,-169.41	0/0:101:101,0:101:3598:0:0:0,-30.404,-324.024	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:68:62,6:62:2213:6:216:0,-0.679527,-179.642	0/1:43:20,23:20:720:23:820:-61.1782,0,-52.1845	0/0:200:200,0:200:7169:0:0:0,-60.206,-645.262	0/1:185:91,94:91:3272:94:3376:-248.364,0,-239.008	0/1:38:16,22:16:576:22:784:-59.4448,0,-40.7358	0/0:179:178,1:178:6376:1:36:0,-50.2861,-570.331	0/1:85:44,41:44:1584:41:1456:-105.748,0,-117.264	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:15:7,8:7:252:8:286:-21.57,0,-18.5135	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:158:157,1:157:5640:1:36:0,-43.9645,-504.12	0/1:181:87,94:87:3132:94:3344:-246.693,0,-227.618	0/1:59:31,28:31:1116:28:1000:-72.554,0,-82.9909	.:.:.:.:.:.:.:.	0/1:87:47,40:47:1688:40:1436:-103.348,0,-126.017	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	0/1:117:70,47:70:2512:47:1676:-115.907,0,-191.111	0/1:44:23,21:23:828:21:742:-53.8576,0,-61.5988	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:58:33,25:33:1180:25:892:-63.1399,0,-89.0483	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/0:104:104,0:104:3720:0:0:0,-31.3071,-335.002	0/1:74:49,25:49:1752:25:885:-57.6912,0,-135.688	0/0:118:118,0:118:4229:0:0:0,-35.5215,-380.787	0/1:162:86,76:86:3061:76:2716:-195.917,0,-226.952	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:108:43,65:43:1533:65:2328:-177.269,0,-105.75	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.322	0/1:27:8,19:8:288:19:680:-53.4014,0,-18.1396	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:15:8,7:8:273:7:252:-18.5135,0,-20.3847	0/1:49:24,25:24:860:25:892:-65.8492,0,-62.9714	0/0:160:159,1:159:5708:1:36:0,-44.5665,-510.237	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:76:42,34:42:1508:34:1224:-87.5888,0,-113.136	0/0:157:157,0:157:5640:0:0:0,-47.2617,-507.718	0/1:86:48,38:48:1728:38:1356:-96.4519,0,-129.917	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.581	0/1:77:42,35:42:1512:35:1252:-89.8058,0,-113.195	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:85:85,0:85:3041:0:0:0,-25.5875,-273.918	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:110:110,0:110:3925:0:0:0,-33.1133,-353.442	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:133:133,0:133:4756:0:0:0,-40.037,-428.198	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:94:92,2:92:3300:2:72:0,-21.4601,-290.382	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/1:109:61,48:61:2196:48:1713:-121.641,0,-165.093	0/1:155:98,57:98:3504:57:2037:-136.941,0,-268.911	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:73:73,0:73:2609:0:0:0,-21.9752,-235.056	0/1:122:61,61:61:2188:61:2180:-159.741,0,-160.46	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:74:44,30:44:1584:30:1076:-74.8766,0,-120.575	0/1:74:30,44:30:1080:44:1575:-119.765,0,-75.237	0/1:58:30,28:30:1076:28:1003:-73.1259,0,-79.6931	0/1:141:68,73:68:2444:73:2607:-192.433,0,-177.769	0/1:39:9,30:9:324:30:1068:-84.6919,0,-17.7657	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118
chr10	4718942	.	TGA	CGT,CGA	143387	PASS	AB=0.489487,0.507421;ABP=6.11509,4.55732;AC=142,44;AF=0.763441,0.236559;AN=186;AO=5234,1652;CIGAR=1X1M1X,1X2M;DP=6913;DPB=6913;DPRA=0,0.996332;EPP=11368.5,3590.28;EPPR=8.80089;GTI=0;LEN=3,1;MEANALT=1.75269,2.18367;MQM=59.9434,59.9897;MQMR=57.8333;NS=93;NUMALT=2;ODDS=4.09733;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=182289,57943;QR=213;RO=6;RPL=0,0;RPP=11368.5,3590.28;RPPR=16.0391;RPR=5234,1652;RUN=1,1;SAF=0,0;SAP=11368.5,3590.28;SAR=5234,1652;SRF=1;SRP=8.80089;SRR=5;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:6:0,1,5:0:0:1,5:36,180:-17.9843,-15.0469,-14.7459,-3.29724,0,-1.79209	1/1:83:0,82,0:0:0:82,0:2862,0:-257.538,-24.6845,0,-257.538,-24.6845,-257.538	1/1:154:0,153,0:0:0:153,0:5303,0:-477.205,-46.0576,0,-477.205,-46.0576,-477.205	1/2:186:0,100,86:0:0:100,86:3489,3040:-531.712,-247.942,-217.839,-284.121,0,-258.232	1/2:31:0,15,16:0:0:15,16:522,535:-86.101,-43.649,-39.1336,-42.7933,0,-37.9768	1/2:20:0,10,10:0:0:10,10:352,360:-58.3855,-29.734,-26.7237,-29.0073,0,-25.997	1/2:139:0,58,81:0:0:58,81:2048,2880:-401.832,-235.055,-217.595,-167.131,0,-142.748	1/2:84:0,38,46:0:0:38,46:1321,1618:-239.456,-132.057,-120.618,-107.748,0,-93.901	1/2:36:0,18,18:0:0:18,18:639,632:-103.856,-51.7876,-46.3691,-52.4208,0,-47.0023	1/2:63:0,30,33:0:0:30,33:1047,1138:-177.934,-92.7873,-83.7564,-85.4941,0,-75.5601	1/1:47:0,47,0:0:0:47,0:1630,0:-146.983,-14.1484,0,-146.983,-14.1484,-146.983	1/2:63:0,33,28:0:0:33,28:1137,958:-170.141,-77.7847,-67.8507,-92.383,0,-83.9542	1/1:67:0,67,0:0:0:67,0:2297,0:-206.989,-20.169,0,-206.989,-20.169,-206.989	1/1:77:0,76,0:0:0:76,0:2641,0:-237.707,-22.8783,0,-237.707,-22.8783,-237.707	1/1:51:1,50,0:1:36:50,0:1701,0:-149.773,-11.7543,0,-150.074,-15.0515,-153.012	1/1:48:1,47,0:1:36:47,0:1641,0:-144.369,-10.8512,0,-144.67,-14.1484,-147.608	1/1:58:1,57,0:1:36:57,0:1975,0:-174.416,-13.8615,0,-174.717,-17.1587,-177.655	1/1:66:0,66,0:0:0:66,0:2308,0:-207.976,-19.868,0,-207.976,-19.868,-207.976	1/2:45:0,25,20:0:0:25,20:867,712:-128.852,-58.3861,-50.8603,-70.8177,0,-64.7971	1/2:157:0,83,73:0:0:83,73:2923,2571:-447.272,-209.304,-184.319,-237.959,0,-215.984	1/2:69:0,33,36:0:0:33,36:1164,1271:-198.628,-103.854,-93.9196,-95.1272,0,-84.2901	1/1:152:0,152,0:0:0:152,0:5318,0:-478.76,-45.7566,0,-478.76,-45.7566,-478.76	1/1:24:0,22,0:0:0:22,0:767,0:-69.119,-6.62266,0,-69.119,-6.62266,-69.119	1/1:72:0,67,5:0:0:67,5:2358,172:-212.133,-20.169,0,-198.165,-5.85619,-196.66	1/2:45:0,20,24:0:0:20,24:680,819:-121.592,-66.4371,-60.4165,-55.1364,0,-47.9117	1/1:202:0,201,0:0:0:201,0:7039,0:-633.252,-60.507,0,-633.252,-60.507,-633.252	1/2:176:0,71,105:0:0:71,105:2467,3720:-503.952,-303.394,-282.021,-200.908,0,-169.3	1/2:40:1,21,18:1:36:21,18:702,627:-104.597,-48.0701,-44.658,-53.9037,0,-51.3953	1/1:288:0,287,0:0:0:287,0:9976,0:-897.448,-86.3956,0,-897.448,-86.3956,-897.448	1/2:65:0,37,28:0:0:37,28:1298,985:-186.162,-80.5337,-69.3956,-105.98,0,-97.551	1/1:68:0,68,0:0:0:68,0:2387,0:-215.085,-20.47,0,-215.085,-20.47,-215.085	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:7:0,3,4:0:0:3,4:106,140:-20.3747,-11.7405,-10.8374,-8.98601,0,-7.78189	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:6:0,6,0:0:0:6,0:202,0:-18.5096,-1.80618,0,-18.5096,-1.80618,-18.5096	1/2:17:0,8,9:0:0:8,9:278,303:-47.4932,-24.8866,-22.4784,-22.9488,0,-20.2395	1/1:173:0,173,0:0:0:173,0:6030,0:-542.04,-52.0782,0,-542.04,-52.0782,-542.04	1/2:101:0,53,48:0:0:53,48:1856,1694:-289.307,-138.296,-122.342,-151.362,0,-136.913	1/2:66:0,28,38:0:0:28,38:944,1348:-186.672,-110.181,-101.752,-76.8354,0,-65.3963	.:.:.:.:.:.:.:.	1/2:109:0,51,58:0:0:51,58:1776,2036:-310.468,-166.05,-150.697,-144.768,0,-127.308	1/2:53:0,26,27:0:0:26,27:904,935:-149.833,-76.3343,-68.5075,-73.8457,0,-65.7179	1/2:100:0,52,47:0:0:52,47:1805,1660:-281.901,-135.177,-119.523,-146.715,0,-132.566	1/2:66:0,29,37:0:0:29,37:981,1294:-185.142,-105.621,-96.8915,-79.8639,0,-68.7258	1/1:45:0,45,0:0:0:45,0:1561,0:-140.778,-13.5464,0,-140.778,-13.5464,-140.778	1/2:57:0,14,43:0:0:14,43:494,1509:-163.383,-123.157,-118.942,-40.5784,0,-27.6341	1/1:81:0,81,0:0:0:81,0:2800,0:-252.239,-24.3834,0,-252.239,-24.3834,-252.239	1/1:85:0,84,0:0:0:84,0:2937,0:-264.363,-25.2865,0,-264.363,-25.2865,-264.363	1/2:102:0,50,52:0:0:50,52:1739,1823:-290.084,-148.695,-133.643,-141.739,0,-126.085	1/1:92:0,91,0:0:0:91,0:3188,0:-286.785,-27.3937,0,-286.785,-27.3937,-286.785	1/2:134:0,67,67:0:0:67,67:2320,2373:-382.199,-193.659,-173.49,-188.891,0,-168.722	1/2:9:0,3,6:0:0:3,6:100,216:-26.069,-17.9843,-17.0812,-8.42677,0,-6.62059	1/2:110:0,62,48:0:0:62,48:2184,1698:-316.464,-138.655,-119.991,-178.162,0,-163.713	1/1:58:0,56,1:0:0:56,1:1964,36:-176.728,-16.8577,0,-173.79,-13.8653,-173.489	1/1:12:0,12,0:0:0:12,0:421,0:-38.2241,-3.61236,0,-38.2241,-3.61236,-38.2241	1/1:95:0,95,0:0:0:95,0:3285,0:-295.739,-28.5979,0,-295.739,-28.5979,-295.739	1/2:32:0,17,15:0:0:17,15:579,536:-91.023,-44.0594,-38.9419,-47.313,0,-42.7975	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309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chr10	4718955	.	G	T	111786	PASS	AB=0.48448;ABP=9.88553;AC=142;AF=0.763441;AN=186;AO=5266;CIGAR=1X;DP=6978;DPB=6978;DPRA=0;EPP=11411.9;EPPR=3709.71;GTI=0;LEN=1;MEANALT=1.05376;MQM=59.9381;MQMR=59.9842;NS=93;NUMALT=1;ODDS=3.17736;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188712;QR=60794;RO=1707;RPL=3;RPP=11411.9;RPPR=3701.03;RPR=5263;RUN=1;SAF=0;SAP=11438;SAR=5266;SRF=1;SRP=3701.03;SRR=1706;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:84:0,84:0:0:84:3007:-270.859,-25.2865,0	1/1:156:1,155:1:36:155:5550:-496.022,-43.3624,0	0/1:191:90,101:90:3219:101:3632:-269.587,0,-232.435	0/1:31:16,15:16:576:15:540:-39.6046,0,-42.8431	0/1:21:10,11:10:356:11:392:-29.2984,0,-26.0596	0/1:143:84,59:84:2995:59:2120:-147.651,0,-226.735	0/1:83:45,38:45:1620:38:1364:-98.0752,0,-121.104	0/1:35:16,19:16:560:19:684:-51.3543,0,-40.1927	0/1:64:34,30:34:1205:30:1080:-78.161,0,-89.488	1/1:46:0,46:0:0:46:1648:-148.595,-13.8474,0	0/1:65:30,35:30:1039:35:1231:-91.5013,0,-74.2487	1/1:68:0,68:0:0:68:2438:-219.675,-20.47,0	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	1/1:51:1,50:1:36:50:1794:-158.144,-11.7543,0	1/1:46:1,45:1:36:45:1611:-141.679,-10.2491,0	1/1:60:1,59:1:32:59:2116:-187.501,-14.8625,0	1/1:65:0,65:0:0:65:2331:-210.03,-19.567,0	0/1:47:22,25:22:788:25:900:-67.1726,0,-57.0964	0/1:157:75,82:75:2670:82:2921:-215.862,0,-193.283	0/1:70:37,33:37:1305:33:1178:-85.2544,0,-96.6773	1/1:152:0,152:0:0:152:5452:-490.806,-45.7566,0	1/1:25:0,25:0:0:25:886:-80.0581,-7.52575,0	1/1:73:5,68:5:176:68:2444:-204.03,-5.79017,0	0/1:45:25,20:25:891:20:697:-49.5043,0,-66.9624	1/1:202:0,202:0:0:202:7220:-649.852,-60.8081,0	0/1:177:106,71:106:3795:71:2552:-176.643,0,-288.465	0/1:41:20,21:20:703:21:752:-55.664,0,-51.2228	1/1:284:0,284:0:0:284:10196:-917.562,-85.4925,0	0/1:66:29,37:29:1040:37:1332:-100.314,0,-74.0464	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	1/1:172:0,172:0:0:172:6180:-556.295,-51.7772,0	0/1:105:52,53:52:1839:53:1900:-139.67,0,-134.167	0/1:69:42,27:42:1491:27:957:-65.6728,0,-113.713	.:.:.:.:.:.:.:.	0/1:116:63,53:63:2256:53:1900:-136.358,0,-168.383	0/1:53:27,26:27:944:26:935:-68.5148,0,-69.3168	0/1:102:50,52:50:1773:52:1862:-137.154,0,-129.146	0/1:67:38,29:38:1349:29:1036:-73.3849,0,-101.539	1/1:50:0,50:0:0:50:1792:-161.558,-15.0515,0	0/1:61:46,15:46:1652:15:540:-30.5737,0,-130.606	1/1:80:0,80:0:0:80:2865:-258.072,-24.0824,0	1/1:86:0,86:0:0:86:3092:-278.478,-25.8886,0	0/1:103:53,50:53:1892:50:1792:-130.556,0,-139.552	1/1:94:0,94:0:0:94:3364:-302.976,-28.2968,0	0/1:134:67,66:67:2408:66:2364:-172.622,0,-176.579	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:111:49,62:49:1764:62:2228:-167.37,0,-125.629	1/1:57:1,56:1:36:56:2007:-177.303,-13.5604,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:95:0,95:0:0:95:3375:-303.928,-28.5979,0	0/1:32:15,17:15:525:17:597:-44.4232,0,-37.9451	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	0/1:34:10,24:10:360:24:852:-66.7544,0,-22.5093	1/1:136:3,133:3:108:133:4776:-419.92,-30.8649,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:109:53,56:53:1877:56:2016:-148.901,0,-136.395	1/1:116:0,116:0:0:116:4159:-374.475,-34.9195,0	0/1:70:25,45:25:891:45:1616:-124.658,0,-59.4367	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	0/1:92:54,38:54:1932:38:1368:-95.7261,0,-146.462	1/1:48:1,47:1:36:47:1692:-148.882,-10.8512,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:60:0,59:0:0:59:2124:-191.068,-17.7608,0	1/1:93:0,93:0:0:93:3340:-300.813,-27.9958,0	1/1:23:0,22:0:0:22:792:-71.2914,-6.62266,0	1/1:104:0,104:0:0:104:3728:-335.721,-31.3071,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:66:0,66:0:0:66:2353:-212.027,-19.868,0	1/1:128:0,128:0:0:128:4592:-413.443,-38.5318,0	1/1:59:0,59:0:0:59:2097:-188.998,-17.7608,0	1/1:64:0,64:0:0:64:2270:-204.559,-19.2659,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:95:0,95:0:0:95:3408:-306.934,-28.5979,0	0/1:67:29,37:29:1002:37:1315:-98.4225,0,-70.2588	0/1:153:70,83:70:2503:83:2960:-220.574,0,-179.464	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0	1/1:80:0,80:0:0:80:2879:-259.346,-24.0824,0	0/1:126:69,57:69:2467:57:2044:-146.3,0,-184.354	1/1:43:0,42:0:0:42:1512:-136.007,-12.6433,0	0/1:74:30,44:30:1076:44:1584:-120.575,0,-74.8766	0/1:63:37,26:37:1304:26:936:-65.5946,0,-98.6937	0/1:74:34,40:34:1201:40:1440:-107.622,0,-86.1174	0/1:110:57,53:57:2022:53:1896:-137.805,0,-149.138	0/1:57:43,14:43:1540:14:504:-28.539,0,-121.734	1/1:69:0,69:0:0:69:2449:-220.648,-20.7711,0	1/1:89:1,88:1:36:88:3161:-281.111,-23.1934,0
chr10	4728900	.	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chr10	4728911	.	AAC	GAG,AAG	143674	PASS	AB=0.500901,0.497296;ABP=3.03379,3.22171;AC=144,44;AF=0.765957,0.234043;AN=188;AO=5167,1670;CIGAR=1X1M1X,2M1X;DP=6860;DPB=6862;DPRA=0,1.27537;EPP=11223,3629.37;EPPR=5.18177;GTI=0;LEN=3,1;MEANALT=1.78723,2.15094;MQM=47.406,58.7335;MQMR=60;NS=94;NUMALT=2;ODDS=2.80192;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=182879,59542;QR=36;RO=1;RPL=5167,1670;RPP=11223,3629.37;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=5167,1670;SAP=11223,3629.37;SAR=0,0;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:36:0,22,14:0:0:22,14:771,504:-103.304,-41.4462,-34.8235,-62.2119,0,-57.9974	1/1:78:0,78,0:0:0:78,0:2756,0:-244.831,-23.4803,0,-244.831,-23.4803,-244.831	1/1:84:0,84,0:0:0:84,0:2974,0:-262.438,-25.2865,0,-262.438,-25.2865,-262.438	1/2:130:0,73,57:0:0:73,57:2599,2048:-377.558,-167.418,-145.442,-210.497,0,-193.338	1/2:46:0,13,33:0:0:13,33:468,1188:-134.509,-97.2923,-93.3789,-37.5708,0,-27.6368	1/2:51:0,24,27:0:0:24,27:838,972:-146.107,-79.571,-72.3463,-66.8863,0,-58.7585	1/2:135:0,72,63:0:0:72,63:2571,2221:-388.112,-181.184,-159.51,-207.28,0,-188.315	1/2:116:0,55,60:0:0:55,60:1941,2073:-323.678,-167.978,-151.421,-155.779,0,-137.717	1/2:65:0,32,33:0:0:32,33:1133,1173:-185.433,-95.8582,-86.2253,-89.9248,0,-79.9909	1/2:73:0,42,31:0:0:42,31:1495,1086:-209.365,-88.7131,-76.0698,-121.003,0,-111.671	1/1:27:0,27,0:0:0:27,0:968,0:-86.4927,-8.12781,0,-86.4927,-8.12781,-86.4927	1/2:41:0,20,21:0:0:20,21:697,752:-117.362,-61.6009,-55.5803,-56.1108,0,-49.7892	1/1:44:0,43,0:0:0:43,0:1523,0:-134.862,-12.9443,0,-134.862,-12.9443,-134.862	1/1:57:0,57,0:0:0:57,0:2034,0:-181.79,-17.1587,0,-181.79,-17.1587,-181.79	1/1:35:0,35,0:0:0:35,0:1238,0:-110.811,-10.5361,0,-110.811,-10.5361,-110.811	1/1:28:0,28,0:0:0:28,0:948,0:-84.6066,-8.42884,0,-84.6066,-8.42884,-84.6066	1/1:37:0,37,0:0:0:37,0:1316,0:-117.086,-11.1381,0,-117.086,-11.1381,-117.086	1/1:35:0,35,0:0:0:35,0:1238,0:-108.608,-10.5361,0,-108.608,-10.5361,-108.608	1/2:12:0,5,7:0:0:5,7:180,252:-35.3663,-20.9051,-19.4,-14.818,0,-12.7108	1/2:131:0,75,56:0:0:75,56:2677,1974:-377.278,-161.055,-138.478,-216.575,0,-199.718	1/2:100:0,59,41:0:0:59,41:2092,1468:-286.961,-120.041,-102.281,-167.273,0,-154.931	1/1:82:0,80,0:0:0:80,0:2862,0:-256.344,-24.0824,0,-256.344,-24.0824,-256.344	1/1:90:0,89,1:0:0:89,1:3135,36:-279.671,-26.7917,0,-276.738,-23.4995,-276.437	1/1:102:0,98,3:0:0:98,3:3471,108:-306.536,-29.5009,0,-297.724,-20.6332,-296.821	1/2:128:0,71,57:0:0:71,57:2532,2044:-370.54,-167.051,-145.678,-203.844,0,-186.685	1/1:258:0,257,0:0:0:257,0:9059,0:-810.07,-77.3647,0,-810.07,-77.3647,-810.07	1/2:207:0,111,96:0:0:111,96:3931,3440:-597.637,-280.782,-247.368,-317.209,0,-288.31	1/2:15:0,8,7:0:0:8,7:288,252:-44.1905,-20.9194,-18.5111,-23.6295,0,-21.5223	1/1:174:0,173,0:0:0:173,0:6147,0:-550.639,-52.0782,0,-550.639,-52.0782,-550.639	1/2:96:0,47,49:0:0:47,49:1660,1745:-276.082,-142.549,-128.401,-133.885,0,-119.135	1/1:112:0,111,1:0:0:111,1:3905,36:-349.079,-33.4143,0,-346.142,-30.1171,-345.841	1/1:4:0,4,0:0:0:4,0:144,0:-13.1972,-1.20412,0,-13.1972,-1.20412,-13.1972	1/2:15:0,11,4:0:0:11,4:396,140:-42.9079,-11.7104,-8.39906,-31.5464,0,-30.3423	1/1:5:0,5,0:0:0:5,0:180,0:-16.3232,-1.50515,0,-16.3232,-1.50515,-16.3232	1/1:6:0,6,0:0:0:6,0:211,0:-19.0397,-1.80618,0,-19.0397,-1.80618,-19.0397	1/2:9:0,2,7:0:0:2,7:72,252:-26.6871,-20.9028,-20.3008,-6.14012,0,-4.03291	1/1:128:0,128,0:0:0:128,0:4498,0:-402.158,-38.5318,0,-402.158,-38.5318,-402.158	1/2:172:0,81,91:0:0:81,91:2870,3264:-497.463,-266.535,-242.152,-231.282,0,-203.889	1/2:30:0,13,17:0:0:13,17:449,608:-85.1896,-49.7895,-45.8761,-35.745,0,-30.6275	1/1:5:0,5,0:0:0:5,0:178,0:-16.2233,-1.50515,0,-16.2233,-1.50515,-16.2233	1/2:125:0,53,72:0:0:53,72:1868,2561:-359.554,-208.909,-192.955,-150.997,0,-129.323	1/2:15:0,11,4:0:0:11,4:389,144:-43.5139,-12.1011,-8.7898,-31.77,0,-30.5659	1/2:150:0,88,62:0:0:88,62:3156,2216:-434.167,-181.026,-154.536,-253.496,0,-234.832	1/2:35:0,16,19:0:0:16,19:571,684:-102.303,-56.1708,-51.3543,-46.4889,0,-40.7694	1/1:30:0,30,0:0:0:30,0:1066,0:-94.8922,-9.0309,0,-94.8922,-9.0309,-94.8922	1/2:85:0,46,38:0:0:46,38:1606,1334:-238.358,-108.451,-94.6041,-129.916,0,-118.477	1/1:113:0,111,2:0:0:111,2:3937,72:-347.601,-33.4143,0,-341.731,-27.1846,-341.129	1/1:116:0,114,2:0:0:114,2:4037,72:-358.968,-34.3174,0,-353.093,-28.0828,-352.491	1/2:106:0,48,58:0:0:48,58:1717,2084:-308.981,-170.364,-155.915,-138.974,0,-121.514	1/1:126:0,124,1:0:0:124,1:4406,36:-393.322,-37.3277,0,-390.384,-34.3816,-390.083	1/2:146:0,79,67:0:0:79,67:2822,2408:-425.615,-196.796,-173.014,-229.176,0,-209.007	1/2:7:0,3,4:0:0:3,4:108,144:-20.8636,-12.1048,-11.2017,-9.11746,0,-7.91334	1/2:108:0,49,59:0:0:49,59:1739,2109:-311.566,-172.055,-157.305,-139.864,0,-122.103	1/1:35:0,35,0:0:0:35,0:1244,0:-111.753,-10.5361,0,-111.753,-10.5361,-111.753	1/1:8:0,8,0:0:0:8,0:286,0:-25.7384,-2.40824,0,-25.7384,-2.40824,-25.7384	1/1:81:0,81,0:0:0:81,0:2882,0:-257.317,-24.3834,0,-257.317,-24.3834,-257.317	1/2:55:0,30,25:0:0:30,25:1030,900:-156.98,-73.7846,-64.7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chr10	4795963	.	G	A	16773.3	PASS	AB=0.282293;ABP=2100.11;AC=45;AF=0.239362;AN=188;AO=1449;CIGAR=1X;DP=9935;DPB=9935;DPRA=1.36035;EPP=3149.47;EPPR=18410.6;GTI=7;LEN=1;MEANALT=1.06122;MQM=59.9827;MQMR=59.9919;NS=94;NUMALT=1;ODDS=1.56598;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51739;QR=303732;RO=8477;RPL=1449;RPP=3149.47;RPPR=18410.6;RPR=0;RUN=1;SAF=0;SAP=3149.47;SAR=1449;SRF=0;SRP=18410.6;SRR=8477;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:38,21:38:1368:21:744:-49.5236,0,-105.66	0/0:144:144,0:144:5164:0:0:0,-43.3483,-464.876	0/0:126:126,0:126:4505:0:0:0,-37.9298,-405.617	0/1:223:180,43:180:6444:43:1532:-71.0434,0,-512.917	0/1:99:77,22:77:2764:22:788:-41.4428,0,-219.199	0/1:92:56,36:56:2000:36:1277:-87.5363,0,-152.579	0/1:171:130,41:130:4622:41:1476:-81.66,0,-364.667	0/1:189:138,51:138:4930:51:1832:-108.266,0,-386.953	0/1:97:72,25:72:2580:25:882:-50.4979,0,-202.879	0/1:93:59,34:59:2112:34:1201:-80.2393,0,-162.353	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:79:53,26:53:1899:26:936:-60.7781,0,-147.406	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:39:29,10:29:1040:10:360:-21.0041,0,-82.1742	0/1:199:154,45:154:5513:45:1616:-85.825,0,-436.389	0/1:138:98,40:98:3516:40:1436:-87.9955,0,-275.107	0/0:116:116,0:116:4172:0:0:0,-34.9195,-375.66	0/0:96:96,0:96:3421:0:0:0,-28.8989,-308.103	0/0:143:137,6:137:4912:6:212:0,-23.6225,-422.806	0/1:86:59,27:59:2124:27:968:-61.5488,0,-165.54	0/0:349:348,1:348:12464:1:36:0,-101.461,-1117.99	0/1:253:172,80:172:6184:80:2849:-180.428,0,-480.435	0/1:34:23,11:23:815:11:396:-25.7477,0,-63.4357	0/0:335:334,0:334:11954:0:0:0,-100.544,-1075.35	0/1:176:123,53:123:4385:53:1892:-117.577,0,-341.833	0/0:132:132,0:132:4736:0:0:0,-39.736,-426.397	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:220:219,0:219:7868:0:0:0,-65.9256,-707.783	0/1:249:167,82:167:5976:82:2927:-188.708,0,-462.99	0/1:46:27,19:27:968:19:680:-47.6818,0,-73.59	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:184:131,53:131:4693:53:1885:-114.537,0,-367.139	0/1:47:31,16:31:1112:16:561:-36.6687,0,-86.2429	0/1:170:113,57:113:4060:57:2051:-133.686,0,-314.41	0/1:81:65,16:65:2331:16:576:-27.7916,0,-185.665	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:118:76,42:76:2712:42:1508:-100.493,0,-208.803	0/0:144:144,0:144:5153:0:0:0,-43.3483,-463.909	0/0:197:197,0:197:7041:0:0:0,-59.3029,-633.706	0/1:113:77,36:77:2760:36:1284:-81.847,0,-214.625	0/0:118:118,0:118:4212:0:0:0,-35.5215,-379.262	0/1:242:167,75:167:5965:75:2688:-169.315,0,-464.107	0/1:4:2,2:2:72:2:42:-2.78578,0,-5.6326	0/1:154:100,53:100:3580:53:1881:-123.296,0,-276.138	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:106:105,1:105:3765:1:36:0,-28.3109,-335.449	0/1:59:39,20:39:1392:20:716:-47.0069,0,-107.818	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:90:63,26:63:2260:26:913:-55.3328,0,-176.511	0/0:169:168,1:168:6028:1:36:0,-47.2758,-539.024	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:236:173,63:173:6185:63:2252:-131.9,0,-485.704	0/0:182:182,0:182:6513:0:0:0,-54.7875,-586.252	0/1:76:57,19:57:2037:19:665:-37.2945,0,-160.722	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/1:193:143,50:143:5136:50:1796:-103.824,0,-404.281	0/0:137:136,0:136:4880:0:0:0,-40.9401,-438.991	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/0:86:86,0:86:3079:0:0:0,-25.8886,-277.338	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:166:166,0:166:5956:0:0:0,-49.971,-536.146	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871	0/0:132:132,0:132:4729:0:0:0,-39.736,-425.767	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/0:69:68,1:68:2444:1:36:0,-17.1728,-216.616	0/0:7:5,0:5:180:0:0:0,-1.50515,-16.1922	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:116:76,40:76:2716:40:1432:-94.2581,0,-209.764	0/1:308:233,75:233:8368:75:2700:-150.526,0,-660.405	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:166:124,42:124:4460:42:1485:-83.9715,0,-351.597	0/0:67:67,0:67:2399:0:0:0,-20.169,-216.166	0/1:77:64,13:64:2300:13:464:-18.9182,0,-184.081	0/1:96:72,24:72:2575:24:864:-49.1837,0,-203.1	0/1:27:23,4:23:820:4:140:-4.81677,0,-65.9947	0/1:82:67,15:67:2400:15:540:-24.2521,0,-191.572	0/1:112:89,23:89:3200:23:824:-40.768,0,-254.507	0/0:115:115,0:115:4128:0:0:0,-34.6184,-371.703	0/0:68:67,0:67:2412:0:0:0,-20.169,-216.976
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chr10	4847550	.	G	T	71592.3	PASS	AB=0.488885;ABP=9.96116;AC=43;AF=0.228723;AN=188;AO=3195;CIGAR=1X;DP=14649;DPB=14649;DPRA=1.16557;EPP=6940.86;EPPR=24855.5;GTI=0;LEN=1;MEANALT=1.08772;MQM=59.954;MQMR=59.9849;NS=94;NUMALT=1;ODDS=6.89027;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113459;QR=407396;RO=11449;RPL=1576;RPP=4.26697;RPPR=14.0262;RPR=1619;RUN=1;SAF=1576;SAP=4.26697;SAR=1619;SRF=5603;SRP=14.2098;SRR=5846;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:38,26:38:1356:26:924:-64.2117,0,-103.075	0/0:139:137,1:137:4871:1:36:0,-38.3037,-434.945	0/0:147:147,0:147:5224:0:0:0,-44.2514,-470.278	0/1:351:178,173:178:6337:173:6160:-448.839,0,-464.76	0/1:62:26,36:26:932:36:1280:-96.8394,0,-65.34	0/1:71:38,33:38:1338:33:1184:-85.4952,0,-99.3453	0/1:127:76,51:76:2728:51:1836:-127.29,0,-207.532	0/1:202:95,107:95:3381:107:3816:-282.828,0,-243.697	0/1:225:116,109:116:4117:109:3856:-279.506,0,-302.982	0/1:163:75,88:75:2684:88:3132:-233.04,0,-192.737	0/0:94:94,0:94:3320:0:0:0,-28.2968,-299.019	0/1:226:109,117:109:3870:117:4104:-301.516,0,-280.464	0/0:156:156,0:156:5555:0:0:0,-46.9607,-500.077	0/0:147:147,0:147:5229:0:0:0,-44.2514,-470.747	0/0:169:169,0:169:6005:0:0:0,-50.8741,-540.554	0/0:130:130,0:130:4642:0:0:0,-39.1339,-417.942	0/0:121:121,0:121:4323:0:0:0,-36.4246,-389.246	0/0:77:76,1:76:2707:1:36:0,-19.581,-240.276	0/1:93:51,42:51:1815:42:1478:-105.317,0,-135.635	0/1:260:136,124:136:4811:124:4402:-318.083,0,-354.881	0/1:265:131,134:131:4671:134:4733:-346.358,0,-340.78	0/0:123:123,0:123:4379:0:0:0,-37.0267,-394.286	0/0:271:268,2:268:9497:2:72:0,-74.8012,-847.861	0/0:178:168,10:168:5954:10:351:0,-21.6567,-504.044	0/1:119:73,46:73:2616:46:1636:-111.706,0,-199.865	0/0:407:407,0:407:14558:0:0:0,-122.519,-1309.97	0/1:365:206,159:206:7334:159:5660:-399.644,0,-550.238	0/1:71:41,30:41:1455:30:1054:-73.7961,0,-109.872	0/0:383:382,1:382:13597:1:21:0,-113.195,-1221.33	0/1:124:82,42:82:2894:42:1488:-96.8849,0,-223.37	0/0:263:262,1:262:9323:1:36:0,-75.5726,-835.443	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:414:414,0:414:14727:0:0:0,-124.626,-1325.17	0/1:125:69,56:69:2453:56:1993:-142.013,0,-183.394	0/1:96:54,42:54:1932:42:1500:-106.388,0,-145.258	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:172:93,79:93:3328:79:2828:-202.974,0,-247.961	0/1:57:22,35:22:775:35:1248:-95.4646,0,-52.9125	0/1:202:93,109:93:3280:109:3854:-286.251,0,-234.613	0/1:137:72,65:72:2588:65:2315:-167.369,0,-191.927	0/0:127:127,0:127:4518:0:0:0,-38.2308,-406.787	0/1:125:67,58:67:2408:58:2060:-148.043,0,-179.347	0/0:152:151,1:151:5366:1:21:0,-43.6566,-480.973	0/0:297:297,0:297:10603:0:0:0,-89.4059,-954.178	0/1:127:53,73:53:1900:73:2604:-196.319,0,-132.988	0/0:209:206,3:206:7334:3:108:0,-52.8401,-650.036	0/1:126:83,43:83:2961:43:1536:-100.603,0,-228.792	0/1:10:2,8:2:72:8:284:-22.8929,0,-3.82642	0/1:95:47,48:47:1670:48:1728:-127.207,0,-121.988	0/0:77:77,0:77:2726:0:0:0,-23.1793,-245.584	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:185:185,0:185:6577:0:0:0,-55.6905,-592.015	0/1:70:35,35:35:1243:35:1256:-92.2708,0,-91.0981	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	0/1:139:72,67:72:2566:67:2404:-174.773,0,-189.346	0/0:227:227,0:227:8086:0:0:0,-68.3338,-727.759	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:358:188,170:188:6711:170:6056:-437.374,0,-496.299	0/0:300:299,1:299:10608:1:36:0,-86.7107,-951.043	0/1:96:46,50:46:1652:50:1760:-129.782,0,-120.07	0/0:109:109,0:109:3855:0:0:0,-32.8123,-347.089	0/1:231:137,94:137:4882:94:3351:-232.269,0,-369.996	0/0:303:303,0:303:10737:0:0:0,-91.2121,-966.246	0/0:82:82,0:82:2912:0:0:0,-24.6845,-262.314	0/0:88:88,0:88:3095:0:0:0,-26.4906,-278.77	0/0:106:106,0:106:3799:0:0:0,-31.9092,-342.107	0/0:43:43,0:43:1519:0:0:0,-12.9443,-137.002	0/0:192:192,0:192:6802:0:0:0,-57.7978,-612.257	0/0:234:234,0:234:8317:0:0:0,-70.441,-748.545	0/0:363:363,0:363:12881:0:0:0,-109.274,-1157.58	0/0:245:245,0:245:8746:0:0:0,-73.7523,-787.132	0/0:191:189,2:189:6692:2:72:0,-50.66,-595.524	0/0:213:212,1:212:7557:1:36:0,-60.5211,-676.574	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:167:166,1:166:5942:1:36:0,-46.6737,-531.288	0/1:236:112,124:112:3980:124:4382:-323.501,0,-287.347	0/1:305:137,168:137:4886:168:5960:-444.623,0,-348.079	0/0:138:135,2:135:4805:2:58:0,-36.2042,-427.208	0/0:142:142,0:142:5024:0:0:0,-42.7463,-452.308	0/0:139:139,0:139:4975:0:0:0,-41.8432,-447.896	0/1:275:137,138:137:4869:138:4876:-356.127,0,-355.582	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:142:69,73:69:2459:73:2604:-191.863,0,-178.818	0/1:165:68,96:68:2433:96:3391:-255.677,0,-169.495	0/1:59:29,30:29:1025:30:1063:-78.2201,0,-74.7999	0/1:142:80,62:80:2859:62:2212:-156.599,0,-214.801	0/1:160:53,107:53:1890:107:3784:-292.593,0,-122.212	0/0:250:249,1:249:8850:1:36:0,-71.6592,-792.89	0/0:243:243,0:243:8634:0:0:0,-73.1503,-777.058
chr10	4849656	.	AGTGT	AGTGC	87159.4	PASS	AB=0.489159;ABP=5.36445;AC=141;AF=0.766304;AN=184;AO=3978;CIGAR=4M1X;DP=5184;DPB=5184;DPRA=0;EPP=8111;EPPR=2406.56;GTI=0;LEN=1;MEANALT=1.34783;MQM=59.9814;MQMR=60;NS=92;NUMALT=1;ODDS=3.13007;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142065;QR=41387;RO=1170;RPL=62;RPP=8111;RPPR=2406.56;RPR=3916;RUN=1;SAF=3978;SAP=8641.13;SAR=0;SRF=1170;SRP=2543.63;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:96:0,96:0:0:96:3423:-308.284,-28.8989,0	1/1:74:1,73:1:36:73:2597:-230.379,-18.6779,0	0/1:103:50,53:50:1765:53:1899:-140.181,0,-128.127	0/1:39:18,21:18:642:21:748:-55.9051,0,-46.3695	0/1:23:12,11:12:420:11:392:-28.6825,0,-31.2099	0/1:88:45,43:45:1605:43:1540:-112.402,0,-118.25	0/1:70:29,40:29:1012:40:1414:-106.552,0,-70.3855	0/1:52:24,28:24:856:28:995:-74.2105,0,-61.7075	0/1:69:30,38:30:1070:38:1360:-101.871,0,-75.7825	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:41:19,21:19:678:21:756:-55.9662,0,-48.9475	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	1/1:64:0,63:0:0:63:2249:-202.312,-18.9649,0	1/1:28:0,27:0:0:27:972:-87.4381,-8.12781,0	1/1:38:0,38:0:0:38:1350:-121.799,-11.4391,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:29:0,29:0:0:29:1033:-93.2824,-8.72987,0	0/1:11:7,4:7:248:4:135:-9.17118,0,-19.353	0/1:80:35,44:35:1248:44:1580:-118.389,0,-88.5221	0/1:52:20,31:20:713:31:1098:-83.5621,0,-48.9275	1/1:66:0,64:0:0:64:2292:-206.245,-19.2659,0	1/1:81:0,81:0:0:81:2892:-260.514,-24.3834,0	1/1:72:3,69:3:103:69:2478:-213.664,-12.0646,0	0/1:15:3,12:3:107:12:419:-33.5272,0,-5.46672	1/1:184:1,181:1:36:181:6436:-575.784,-51.5224,0	0/1:76:37,36:37:1310:36:1292:-94.3441,0,-95.9622	0/1:23:15,8:15:533:8:288:-19.3437,0,-41.3798	1/1:96:0,96:0:0:96:3392:-305.494,-28.8989,0	0/1:106:58,48:58:2038:48:1720:-123.176,0,-151.781	1/1:78:0,77:0:0:77:2759:-248.191,-23.1793,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:4,5:4:130:5:172:-13.1087,0,-9.31183	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	1/1:99:0,99:0:0:99:3548:-319.038,-29.802,0	0/1:126:67,59:67:2354:59:2111:-152.329,0,-174.188	0/1:20:12,7:12:431:7:252:-16.9496,0,-33.0514	.:.:.:.:.:.:.:.	0/1:97:36,61:36:1283:61:2175:-166.816,0,-86.5734	0/1:15:11,4:11:386:4:144:-8.79817,0,-30.5604	0/1:60:38,22:38:1346:22:792:-53.5439,0,-103.378	0/1:44:22,22:22:782:22:788:-57.9995,0,-57.4577	1/1:39:0,36:0:0:36:1274:-114.602,-10.8371,0	0/1:65:40,25:40:1405:25:896:-61.3934,0,-107.18	1/1:64:0,64:0:0:64:2291:-206.451,-19.2659,0	1/1:104:0,104:0:0:104:3702:-333.38,-31.3071,0	0/1:61:42,19:42:1490:19:675:-42.7141,0,-116.031	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:67:22,45:22:765:45:1603:-124.391,0,-48.9991	0/1:8:3,5:3:101:5:180:-14.1438,0,-7.01489	0/1:70:40,30:40:1413:30:1076:-76.0808,0,-106.395	1/1:55:0,55:0:0:55:1960:-176.675,-16.5567,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:69:0,69:0:0:69:2464:-221.94,-20.7711,0	0/1:29:12,17:12:432:17:603:-45.8696,0,-30.4913	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:13:10,3:10:345:3:108:-6.16178,0,-27.4688	0/1:51:21,30:21:748:30:1080:-82.1607,0,-52.2929	1/1:97:0,97:0:0:97:3467:-312.242,-29.1999,0	0/1:7:3,4:3:107:4:144:-11.2064,0,-7.87496	0/1:153:70,82:70:2480:82:2931:-217.908,0,-177.337	1/1:133:0,129:0:0:129:4575:-411.57,-38.8329,0	0/1:29:19,9:19:676:9:324:-20.7172,0,-52.3792	1/1:38:0,37:0:0:37:1311:-117.931,-11.1381,0	0/1:98:53,44:53:1883:44:1575:-112.53,0,-140.236	1/1:96:0,95:0:0:95:3404:-306.215,-28.5979,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:53:0,50:0:0:50:1792:-161.203,-15.0515,0	1/1:75:0,75:0:0:75:2670:-240.545,-22.5773,0	1/1:24:0,23:0:0:23:810:-72.8595,-6.92369,0	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:93:0,93:0:0:93:3328:-299.738,-27.9958,0	1/1:98:0,98:0:0:98:3512:-316.29,-29.5009,0	1/1:54:0,53:0:0:53:1908:-171.638,-15.9546,0	1/1:62:0,62:0:0:62:2219:-199.974,-18.6639,0	1/1:13:0,13:0:0:13:462:-41.9165,-3.91339,0	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	0/1:61:30,30:30:1068:30:1067:-77.9197,0,-78.0097	0/1:72:43,29:43:1529:29:1032:-71.5193,0,-116.229	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:42:0,41:0:0:41:1468:-132.203,-12.3422,0	0/1:86:45,40:45:1593:40:1419:-102.059,0,-117.713	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	0/1:57:35,22:35:1234:22:788:-54.0861,0,-94.2043	0/1:49:22,27:22:757:27:968:-72.6869,0,-53.6942	0/1:27:11,16:11:388:16:567:-43.2329,0,-27.1296	0/1:47:24,23:24:848:23:820:-59.9741,0,-62.4896	0/1:32:24,8:24:849:8:288:-16.6344,0,-67.0965	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	1/1:55:1,54:1:36:54:1923:-169.748,-12.9584,0
chr10	4849837	.	C	T	75883.5	PASS	AB=0.496521;ABP=3.26718;AC=142;AF=0.755319;AN=188;AO=3612;CIGAR=1X;DP=4849;DPB=4849;DPRA=52.129;EPP=7846.37;EPPR=2678.27;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.9754;MQMR=60;NS=94;NUMALT=1;ODDS=1.58265;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129352;QR=44176;RO=1236;RPL=3612;RPP=7846.37;RPPR=2678.27;RPR=0;RUN=1;SAF=0;SAP=7846.37;SAR=3612;SRF=0;SRP=2686.95;SRR=1236;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:39,33:39:1387:33:1188:-85.5463,0,-103.454	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	0/1:97:61,36:61:2143:36:1292:-87.3839,0,-163.933	0/1:31:15,16:15:540:16:561:-41.4852,0,-39.6046	0/1:34:18,16:18:648:16:572:-41.5784,0,-48.4169	0/1:89:37,52:37:1332:52:1872:-141.967,0,-93.3907	0/1:72:47,25:47:1688:25:886:-58.3828,0,-130.533	0/1:150:76,74:76:2732:74:2652:-193.772,0,-200.968	0/1:67:25,42:25:892:42:1508:-115.716,0,-60.4307	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:58:25,33:25:896:33:1180:-89.045,0,-63.5006	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:36:0,35:0:0:35:1260:-113.346,-10.5361,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:34:21,13:21:741:13:468:-32.2246,0,-56.7766	0/1:88:37,51:37:1313:51:1798:-135.607,0,-91.9791	1/1:70:0,70:0:0:70:2501:-225.341,-21.0721,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:78:2,76:2:72:76:2728:-238.926,-16.6436,0	0/1:83:47,36:47:1673:36:1288:-91.1932,0,-125.87	1/1:181:0,181:0:0:181:6426:-578.38,-54.4864,0	0/1:155:79,76:79:2840:76:2717:-198.112,0,-209.178	0/1:11:4,7:4:144:7:237:-18.3477,0,-10.0023	1/1:131:1,130:1:36:130:4664:-416.322,-35.8367,0	0/1:72:31,41:31:1112:41:1468:-110.742,0,-78.7172	1/1:69:0,69:0:0:69:2484:-223.813,-20.7711,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:1:0,1:0:0:1:21:-2.09995,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:105:0,105:0:0:105:3727:-335.628,-31.6082,0	0/1:88:52,36:52:1857:36:1269:-88.0201,0,-140.917	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:67:30,37:30:1076:37:1332:-100.013,0,-76.9838	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/1:50:19,31:19:684:31:1112:-85.3398,0,-46.8388	0/1:29:13,16:13:468:16:572:-43.0836,0,-33.7298	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:97:45,52:45:1616:52:1864:-138.84,0,-116.53	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:69:0,69:0:0:69:2466:-222.193,-20.7711,0	0/1:55:32,23:32:1140:23:828:-58.2875,0,-86.3526	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:65:30,35:30:1076:35:1256:-93.7783,0,-77.5859	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	0/1:55:27,28:27:949:28:1008:-74.4797,0,-69.1661	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:56:23,33:23:805:33:1176:-89.2901,0,-55.9098	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:90:38,52:38:1360:52:1868:-141.307,0,-95.6079	1/1:111:0,111:0:0:111:3988:-359.109,-33.4143,0	0/1:33:14,19:14:500:19:684:-51.9563,0,-35.4022	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:155:86,69:86:3071:69:2476:-176.434,0,-229.959	1/1:98:0,98:0:0:98:3524:-317.366,-29.5009,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:45:0,45:0:0:45:1601:-144.378,-13.5464,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:126:1,125:1:36:125:4488:-400.489,-34.3315,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:108:0,108:0:0:108:3864:-347.954,-32.5112,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:48:0,48:0:0:48:1690:-152.382,-14.4494,0	1/1:43:1,42:1:36:42:1500:-131.696,-9.34602,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:48:31,17:31:1112:17:589:-38.8839,0,-85.9419	0/1:147:82,65:82:2933:65:2321:-164.897,0,-219.951	1/1:56:0,56:0:0:56:2001:-180.359,-16.8577,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:66:21,45:21:752:45:1620:-126.222,0,-48.1383	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:41:26,15:26:932:15:540:-36.5943,0,-71.8566	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:37:25,12:25:900:12:432:-28.0831,0,-70.1829	0/1:29:19,10:19:676:10:360:-24.0144,0,-52.4381	1/1:42:0,42:0:0:42:1497:-135.023,-12.6433,0	1/1:48:0,48:0:0:48:1728:-155.803,-14.4494,0
chr10	4896957	.	A	C	16612.1	PASS	AB=0.476453;ABP=16.0999;AC=44;AF=0.234043;AN=188;AO=1299;CIGAR=1X;DP=5620;DPB=5620;DPRA=1.09341;EPP=2815.07;EPPR=9333.88;GTI=0;LEN=1;MEANALT=1.0625;MQM=34.2179;MQMR=59.1615;NS=94;NUMALT=1;ODDS=1.07795;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46444;QR=154302;RO=4317;RPL=1;RPP=2815.07;RPPR=9325.21;RPR=1298;RUN=1;SAF=0;SAP=2823.75;SAR=1299;SRF=1;SRP=9368.57;SRR=4316;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:17,28:17:608:28:1004:-67.4364,0,-41.5048	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.343	0/0:78:78,0:78:2767:0:0:0,-23.4803,-249.169	0/1:116:53,63:53:1889:63:2256:-142.952,0,-135.3	0/1:55:32,23:32:1143:23:816:-49.635,0,-86.5547	0/1:22:7,15:7:240:15:540:-36.696,0,-15.2981	0/1:51:28,23:28:1008:23:828:-51.003,0,-75.582	0/1:95:48,47:48:1696:47:1690:-107.326,0,-124.32	0/1:62:35,27:35:1256:27:960:-59.917,0,-94.6805	0/1:53:28,25:28:1008:25:900:-56.1386,0,-75.0249	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.881	0/1:74:39,35:39:1400:35:1232:-77.5875,0,-103.987	0/0:75:75,0:75:2640:0:0:0,-22.5772,-237.621	0/0:36:36,0:36:1278:0:0:0,-10.8371,-115.259	0/0:42:41,1:41:1464:1:36:0,-9.74049,-128.993	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1056	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8654	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6246	0/1:25:12,13:12:432:13:468:-29.4545,0,-31.6954	0/1:131:66,65:66:2356:65:2336:-145.713,0,-172.798	0/1:92:52,40:52:1864:40:1440:-88.6663,0,-140.286	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.125	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.2	0/0:64:64,0:64:2300:0:0:0,-19.2659,-206.943	0/1:63:44,19:44:1560:19:680:-35.6792,0,-118.587	0/0:156:156,0:156:5556:0:0:0,-46.9607,-499.971	0/1:112:73,38:73:2624:38:1360:-77.1708,0,-202.568	0/1:9:7,2:7:252:2:72:-3.45843,0,-20.297	0/0:143:142,0:142:5069:0:0:0,-42.7463,-455.832	0/1:76:40,36:40:1421:36:1296:-81.4168,0,-105.156	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.063	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:25:10,15:10:360:15:527:-35.8673,0,-25.2186	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3757	0/1:24:13,11:13:464:11:396:-24.4056,0,-34.8527	0/0:140:140,0:140:4965:0:0:0,-42.1442,-446.716	0/1:98:49,49:49:1756:49:1764:-112.996,0,-128.711	0/1:27:13,13:13:464:13:448:-28.6314,0,-33.9129	0/1:6:2,4:2:72:4:144:-10.2046,0,-5.02195	0/1:67:35,32:35:1256:32:1148:-72.5176,0,-92.7477	0/1:20:13,7:13:464:7:248:-14.5514,0,-36.0769	0/1:168:88,79:88:3149:79:2811:-177.425,0,-232.858	0/1:25:17,8:17:612:8:288:-15.7439,0,-47.028	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.499	0/1:98:43,55:43:1544:55:1957:-126.219,0,-109.087	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.073	0/0:114:114,0:114:4083:0:0:0,-34.3174,-367.023	0/1:61:35,26:35:1252:26:936:-56.5463,0,-94.5938	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.333	0/1:127:58,69:58:2065:69:2480:-156.645,0,-147.775	0/1:7:2,5:2:72:5:180:-12.5559,0,-4.72951	0/1:94:55,39:55:1980:39:1385:-84.0638,0,-149.901	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.9724	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4419	0/0:87:86,1:86:3084:1:36:0,-22.6162,-274.056	0/1:40:23,17:23:824:17:608:-36.8671,0,-62.3521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5418	0/1:58:32,26:32:1152:26:932:-56.8702,0,-86.5295	0/0:103:102,1:102:3668:1:36:0,-27.8185,-326.968	0/1:8:2,6:2:72:6:216:-14.2907,0,-4.33769	0/1:100:48,52:48:1720:52:1872:-117.517,0,-124.951	0/0:179:179,0:179:6415:0:0:0,-53.8844,-577.249	0/1:43:20,23:20:711:23:824:-52.6251,0,-51.3714	0/0:41:41,0:41:1455:0:0:0,-12.3422,-130.726	0/1:80:38,42:38:1364:42:1496:-96.0068,0,-98.5792	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.617	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.4933	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.856	0/0:41:41,0:41:1467:0:0:0,-12.3422,-132.247	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:122:122,0:122:4370:0:0:0,-36.7257,-393.371	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.363	0/0:106:106,0:106:3773:0:0:0,-31.9092,-339.442	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.269	0/0:50:50,0:50:1762:0:0:0,-15.0515,-158.77	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.436	0/0:19:19,0:19:667:0:0:0,-5.71957,-60.3261	0/0:45:44,1:44:1584:1:36:0,-10.3002,-139.558	0/1:61:27,34:27:968:34:1216:-79.2212,0,-69.0565	0/1:90:56,34:56:2003:34:1220:-70.6925,0,-153.408	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.191	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.362	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:72:42,30:42:1482:30:1080:-64.4531,0,-111.978	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0271	0/1:56:28,28:28:999:28:989:-62.7783,0,-73.3482	0/1:59:25,34:25:885:34:1215:-81.2629,0,-62.1848	0/1:25:12,13:12:432:13:464:-30.577,0,-31.5142	0/1:60:33,27:33:1184:27:963:-59.7191,0,-88.7617	0/1:38:20,18:20:720:18:615:-36.5612,0,-53.6189	0/0:69:69,0:69:2464:0:0:0,-20.7711,-221.019	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.607
chr10	4896970	.	C	T	17170.7	PASS	AB=0.482169;ABP=10.5994;AC=44;AF=0.234043;AN=188;AO=1329;CIGAR=1X;DP=5648;DPB=5648;DPRA=1.12506;EPP=2888.9;EPPR=9370.74;GTI=0;LEN=1;MEANALT=1.02083;MQM=34.2302;MQMR=59.2031;NS=94;NUMALT=1;ODDS=1.75217;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47626;QR=154186;RO=4314;RPL=1329;RPP=2888.9;RPPR=9370.74;RPR=0;RUN=1;SAF=0;SAP=2888.9;SAR=1329;SRF=0;SRP=9370.74;SRR=4314;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:17,28:17:608:28:1004:-67.3957,0,-41.5048	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.226	0/0:77:75,0:75:2660:0:0:0,-22.5772,-239.225	0/1:117:52,65:52:1860:65:2324:-148.248,0,-132.398	0/1:56:32,24:32:1148:24:849:-52.4317,0,-86.7048	0/1:22:7,15:7:252:15:540:-36.696,0,-16.3924	0/1:52:28,24:28:1004:24:860:-53.39,0,-74.9205	0/1:98:50,48:50:1776:48:1728:-109.355,0,-130.62	0/1:63:35,28:35:1252:28:1008:-63.1,0,-94.0178	0/1:55:30,25:30:1072:25:900:-55.5366,0,-80.179	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.119	0/1:78:41,37:41:1444:37:1328:-83.4321,0,-106.732	0/0:75:75,0:75:2688:0:0:0,-22.5772,-241.921	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.039	0/0:44:43,1:43:1540:1:36:0,-10.3426,-135.808	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.466	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8654	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4	0/1:25:12,13:12:432:13:464:-29.2326,0,-31.6954	0/1:132:65,67:65:2332:67:2397:-150.673,0,-170.365	0/1:94:52,42:52:1856:42:1512:-93.9074,0,-138.986	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.436	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.274	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.396	0/1:61:42,19:42:1500:19:684:-36.422,0,-113.795	0/0:159:159,0:159:5661:0:0:0,-47.8638,-509.386	0/1:112:73,39:73:2598:39:1400:-80.3486,0,-200.291	0/1:9:7,2:7:252:2:72:-3.45843,0,-20.297	0/0:141:141,0:141:5013:0:0:0,-42.4452,-451.125	0/1:75:39,36:39:1383:36:1296:-81.7178,0,-102.049	0/0:59:59,0:59:2115:0:0:0,-17.7608,-190.219	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:25:10,15:10:360:15:521:-35.3658,0,-25.2186	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.367	0/1:26:13,13:13:464:13:438:-27.5366,0,-34.2507	0/0:141:141,0:141:5064:0:0:0,-42.4452,-455.611	0/1:99:49,50:49:1752:50:1800:-115.617,0,-128.095	0/1:29:15,14:15:540:14:504:-31.6189,0,-40.189	0/1:5:1,4:1:36:4:144:-10.5056,0,-2.09312	0/1:67:35,32:35:1248:32:1152:-72.7185,0,-92.4559	0/1:20:13,7:13:464:7:252:-14.7548,0,-36.0769	0/1:169:89,80:89:3177:80:2876:-181.781,0,-235.122	0/1:25:16,9:16:576:9:324:-18.6128,0,-43.8456	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.155	0/1:98:42,56:42:1508:56:2000:-129.727,0,-106.393	0/0:85:85,0:85:3031:0:0:0,-25.5875,-272.995	0/0:116:116,0:116:4143:0:0:0,-34.9195,-372.417	0/1:62:35,27:35:1252:27:972:-59.1142,0,-94.2928	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.613	0/1:128:57,71:57:1994:71:2547:-162.056,0,-141.048	0/1:7:2,5:2:72:5:180:-12.5559,0,-4.72951	0/1:95:55,40:55:1951:40:1440:-87.8535,0,-147.094	0/0:28:27,0:27:949:0:0:0,-8.12781,-85.3308	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2035	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.326	0/1:40:23,17:23:815:17:612:-37.0482,0,-61.5395	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5418	0/1:58:31,27:31:1104:27:964:-59.7852,0,-82.21	0/0:101:100,1:100:3592:1:36:0,-27.2164,-320.123	0/1:9:3,6:3:108:6:216:-13.9896,0,-7.2767	0/1:105:53,52:53:1892:52:1845:-114.451,0,-138.935	0/0:181:181,0:181:6484:0:0:0,-54.4864,-583.475	0/1:45:22,23:22:783:23:828:-52.2242,0,-57.2429	0/0:41:41,0:41:1435:0:0:0,-12.3422,-129.414	0/1:81:37,44:37:1328:44:1580:-101.985,0,-95.0397	0/0:112:111,1:111:3988:1:36:0,-30.1485,-355.3	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.4933	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.971	0/0:41:41,0:41:1464:0:0:0,-12.3422,-131.978	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:122:122,0:122:4372:0:0:0,-36.7257,-393.57	0/0:62:61,0:61:2175:0:0:0,-18.3628,-195.582	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.514	0/0:75:75,0:75:2688:0:0:0,-22.5772,-241.792	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.442	0/0:64:64,0:64:2253:0:0:0,-19.2659,-202.986	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:45:44,1:44:1580:1:36:0,-10.3002,-139.198	0/1:59:24,34:24:856:34:1220:-79.9883,0,-59.5434	0/1:88:55,33:55:1976:33:1188:-68.5534,0,-151.582	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.24	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:74:41,33:41:1476:33:1184:-72.2772,0,-110.832	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0058	0/1:56:28,28:28:1000:28:1008:-63.6251,0,-73.4487	0/1:59:24,35:24:860:35:1260:-84.7352,0,-59.9401	0/1:24:12,12:12:417:12:417:-27.102,0,-30.4543	0/1:61:33,28:33:1184:28:1008:-62.7803,0,-88.4606	0/1:40:22,18:22:788:18:636:-37.2979,0,-59.1498	0/0:72:72,0:72:2572:0:0:0,-21.6742,-230.402	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.254
chr10	4898462	.	T	C	21326.8	PASS	AB=0.519984;ABP=11.6024;AC=43;AF=0.233696;AN=184;AO=1299;CIGAR=1X;DP=5204;DPB=5204;DPRA=1.24259;EPP=2823.75;EPPR=8471.75;GTI=0;LEN=1;MEANALT=1;MQM=53.6828;MQMR=53.9818;NS=92;NUMALT=1;ODDS=1.47042;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46040;QR=137184;RO=3904;RPL=0;RPP=2823.75;RPPR=8480.44;RPR=1299;RUN=1;SAF=0;SAP=2823.75;SAR=1299;SRF=1;SRP=8471.75;SRR=3903;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:4,6:4:144:6:216:-16.6875,0,-10.2698	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.4759	0/0:112:112,0:112:3945:0:0:0,-33.7154,-353.73	0/1:166:73,93:73:2592:93:3321:-247.823,0,-182.35	0/1:16:4,12:4:140:12:428:-33.9895,0,-8.11205	0/1:9:2,7:2:72:7:248:-19.902,0,-4.11026	0/1:58:28,30:28:1008:30:1064:-78.3033,0,-73.226	0/1:111:46,65:46:1648:65:2308:-172.851,0,-114.235	0/1:48:21,27:21:739:27:932:-68.65,0,-51.9615	0/1:33:16,17:16:555:17:595:-43.8815,0,-40.2203	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.1053	0/1:45:18,27:18:648:27:955:-72.1854,0,-44.9581	0/0:31:31,0:31:1074:0:0:0,-9.33193,-96.7568	0/0:41:41,0:41:1430:0:0:0,-12.3422,-128.708	0/0:55:55,0:55:1908:0:0:0,-16.5566,-171.618	0/0:39:39,0:39:1367:0:0:0,-11.7402,-123.147	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.5122	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5345	0/1:21:12,9:12:420:9:315:-22.0814,0,-31.5028	0/1:77:41,36:41:1428:36:1280:-92.136,0,-105.288	0/1:97:39,58:39:1384:58:2050:-154.566,0,-94.5867	0/0:63:63,0:63:2221:0:0:0,-18.9649,-199.841	0/0:46:45,1:45:1573:1:36:0,-10.2517,-138.008	0/0:16:16,0:16:560:0:0:0,-4.81648,-50.5402	0/1:45:25,20:25:888:20:711:-50.6774,0,-66.206	0/0:169:169,0:169:5956:0:0:0,-50.8741,-535.761	0/1:139:66,73:66:2327:73:2600:-191.682,0,-167.044	0/1:21:8,13:8:271:13:460:-35.3555,0,-18.3666	0/0:153:153,0:153:5358:0:0:0,-46.0576,-481.961	0/1:118:61,57:61:2107:57:2026:-146.578,0,-153.607	0/0:71:71,0:71:2503:0:0:0,-21.3731,-225.209	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9285	0/1:21:11,10:11:392:10:356:-26.016,0,-29.1241	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2801	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.2461	0/1:4:3,1:3:104:1:36:-2.38511,0,-8.47841	0/0:135:134,1:134:4625:1:32:0,-37.4656,-412.422	0/1:48:24,24:24:829:24:860:-63.0391,0,-60.3171	0/1:28:13,15:13:451:15:540:-40.3791,0,-31.9832	.:.:.:.:.:.:.:.	0/1:87:45,42:45:1580:42:1481:-107.194,0,-115.852	0/1:16:7,9:7:252:9:320:-24.2854,0,-18.1798	0/1:84:40,44:40:1398:44:1552:-114.347,0,-100.326	0/1:23:11,12:11:388:12:428:-31.8945,0,-27.9766	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.3354	0/1:59:29,30:29:1015:30:1071:-78.805,0,-73.7953	0/0:68:68,0:68:2391:0:0:0,-20.47,-213.645	0/0:102:99,3:99:3483:3:108:0,-20.7239,-302.612	0/1:40:13,27:13:443:27:964:-74.9592,0,-27.7528	0/0:53:53,0:53:1875:0:0:0,-15.9546,-167.78	0/1:112:47,65:47:1647:65:2295:-172.482,0,-114.74	0/1:5:1,4:1:36:4:144:-11.7989,0,-2.09053	0/1:94:54,40:54:1894:40:1428:-100.027,0,-141.192	0/0:34:34,0:34:1193:0:0:0,-10.235,-107.534	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/0:110:110,0:110:3862:0:0:0,-33.1133,-345.513	0/1:15:6,9:6:208:9:316:-23.4794,0,-14.495	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0724	0/1:9:6,3:6:216:3:108:-7.36308,0,-17.0757	0/1:38:19,19:19:672:19:684:-50.3277,0,-49.2882	0/0:85:85,0:85:3000:0:0:0,-25.5875,-268.997	.:.:.:.:.:.:.:.	0/1:145:67,78:67:2307:78:2765:-204.919,0,-164.131	0/0:137:135,2:135:4783:2:72:0,-34.4093,-423.032	0/1:36:27,9:27:960:9:320:-18.2069,0,-75.5052	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.171	0/1:56:29,27:29:1015:27:954:-68.9087,0,-74.7281	0/0:123:120,3:120:4237:3:104:0,-27.3297,-371.118	0/0:30:29,1:29:986:1:32:0,-5.83363,-85.4637	0/0:51:51,0:51:1790:0:0:0,-15.3525,-160.57	0/0:34:34,0:34:1185:0:0:0,-10.235,-106.848	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.2937	0/0:123:123,0:123:4339:0:0:0,-37.0267,-389.161	0/0:79:79,0:79:2762:0:0:0,-23.7814,-246.43	0/0:105:104,0:104:3655:0:0:0,-31.3071,-327.743	0/0:105:105,0:105:3732:0:0:0,-31.6081,-335.721	0/0:40:40,0:40:1420:0:0:0,-12.0412,-127.586	0/0:57:57,0:57:2011:0:0:0,-17.1587,-179.624	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/0:59:59,0:59:2099:0:0:0,-17.7608,-188.775	0/1:109:45,64:45:1572:64:2261:-170.246,0,-108.277	0/1:135:74,61:74:2599:61:2131:-151.15,0,-191.941	0/0:35:35,0:35:1228:0:0:0,-10.536,-110.648	0/0:32:32,0:32:1115:0:0:0,-9.63296,-100.371	0/0:35:35,0:35:1227:0:0:0,-10.536,-110.032	0/1:84:49,35:49:1718:35:1252:-87.4646,0,-129.402	0/0:23:23,0:23:803:0:0:0,-6.92369,-70.8125	0/1:42:20,22:20:684:22:779:-57.4384,0,-49.0351	0/1:39:20,19:20:690:19:660:-47.828,0,-50.4769	0/1:21:16,5:16:556:5:180:-10.207,0,-43.8056	0/1:79:39,40:39:1361:40:1398:-102.175,0,-98.6602	0/1:34:10,24:10:348:24:864:-67.7049,0,-21.4008	0/0:52:52,0:52:1840:0:0:0,-15.6536,-165.46	0/0:43:43,0:43:1502:0:0:0,-12.9443,-135.011
chr10	4898470	.	TGCACTT	CGCACTC,CGCACTT	117539	PASS	AB=0.503288,0.488588;ABP=3.25307,5.93444;AC=141,43;AF=0.766304,0.233696;AN=184;AO=4307,1272;CIGAR=1X5M1X,1X6M;DP=5632;DPB=5631.57;DPRA=0,1.1;EPP=9346.86,2765.12;EPPR=7.35324;GTI=2;LEN=7,1;MEANALT=2.02174,2.41667;MQM=54.1272,53.8561;MQMR=60;NS=92;NUMALT=2;ODDS=0.598857;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=151513,44977;QR=69;RO=2;RPL=0,0;RPP=9355.54,2765.12;RPPR=7.35324;RPR=4307,1272;RUN=1,1;SAF=1,0;SAP=9346.86,2765.12;SAR=4306,1272;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:10:0,4,6:0:0:4,6:144,212:-29.2542,-17.5342,-16.3301,-12.076,0,-10.2698	1/1:37:0,37,0:0:0:37,0:1306,0:-117.486,-11.1381,0,-117.486,-11.1381,-117.486	1/1:138:0,136,0:0:0:136,0:4830,0:-432.744,-40.9401,0,-432.744,-40.9401,-432.744	1/2:170:0,80,88:0:0:80,88:2845,3142:-486.657,-255.787,-231.704,-230.965,0,-204.474	1/2:18:0,6,11:0:0:6,11:212,396:-49.4995,-32.2611,-30.4549,-17.235,0,-13.9237	1/2:9:0,2,7:0:0:2,7:72,248:-26.3638,-20.504,-19.902,-6.21747,0,-4.11026	1/2:64:0,34,30:0:0:34,30:1184,1061:-182.237,-86.5343,-76.2993,-96.0519,0,-87.021	1/2:113:0,48,64:0:0:48,64:1675,2249:-317.22,-181.763,-167.314,-135.466,0,-116.2	1/2:47:0,22,24:0:0:22,24:780,839:-130.632,-67.4282,-60.8055,-63.2133,0,-55.9886	1/2:34:0,18,16:0:0:18,16:635,576:-98.8681,-47.2947,-41.8762,-51.9293,0,-47.1128	1/1:28:0,28,0:0:0:28,0:966,0:-87.042,-8.42884,0,-87.042,-8.42884,-87.042	1/2:46:1,20,25:1:36:20,25:686,875:-123.072,-67.8101,-64.7273,-52.6106,0,-48.0231	1/1:37:0,37,0:0:0:37,0:1262,0:-113.637,-11.1381,0,-113.637,-11.1381,-113.637	1/1:47:0,46,0:0:0:46,0:1584,0:-142.359,-13.8474,0,-142.359,-13.8474,-142.359	1/1:56:0,56,0:0:0:56,0:1930,0:-173.617,-16.8577,0,-173.617,-16.8577,-173.617	1/1:45:0,45,0:0:0:45,0:1510,0:-135.998,-13.5464,0,-135.998,-13.5464,-135.998	1/1:16:0,16,0:0:0:16,0:532,0:-48.0758,-4.81648,0,-48.0758,-4.81648,-48.0758	1/1:16:0,16,0:0:0:16,0:544,0:-49.1735,-4.81648,0,-49.1735,-4.81648,-49.1735	1/2:20:0,11,9:0:0:11,9:392,307:-56.7694,-24.9815,-21.6702,-32.1331,0,-29.4238	1/2:81:0,47,33:0:0:47,33:1688,1184:-233.704,-96.4361,-82.2877,-137.305,0,-127.371	1/2:98:0,40,57:0:0:40,57:1391,2032:-276.633,-164.332,-152.291,-112.304,0,-95.1455	1/1:70:0,69,0:0:0:69,0:2427,0:-218.061,-20.7711,0,-218.061,-20.7711,-218.061	1/1:57:0,56,1:0:0:56,1:1987,36:-178.459,-16.8577,0,-175.524,-13.563,-175.223	1/1:17:0,17,0:0:0:17,0:593,0:-53.6151,-5.11751,0,-53.6151,-5.11751,-53.6151	1/2:46:0,26,20:0:0:26,20:920,712:-133.011,-58.2957,-50.4689,-75.0695,0,-69.0489	1/1:188:0,188,0:0:0:188,0:6662,0:-599.233,-56.5936,0,-599.233,-56.5936,-599.233	1/2:138:0,66,71:0:0:66,71:2341,2531:-395.826,-205.604,-185.736,-190.231,0,-168.858	1/2:22:0,9,13:0:0:9,13:311,460:-62.9934,-37.7638,-35.0545,-25.578,0,-21.6646	1/1:175:0,172,0:0:0:172,0:6119,0:-550.028,-51.7772,0,-550.028,-51.7772,-550.028	1/2:129:1,71,56:1:33:71,56:2487,1981:-359.553,-158.255,-139.549,-198.978,0,-184.789	1/1:80:0,78,0:0:0:78,0:2720,0:-244.427,-23.4803,0,-244.427,-23.4803,-244.427	1/1:7:0,7,0:0:0:7,0:252,0:-22.9963,-2.10721,0,-22.9963,-2.10721,-22.9963	1/2:24:0,14,10:0:0:14,10:492,356:-69.1899,-29.3273,-25.1129,-40.2156,0,-37.2053	1/1:4:0,4,0:0:0:4,0:144,0:-13.2801,-1.20412,0,-13.2801,-1.20412,-13.2801	1/1:15:0,14,0:0:0:14,0:504,0:-45.2153,-4.21442,0,-45.2153,-4.21442,-45.2153	1/2:5:0,4,1:0:0:4,1:144,36:-15.0053,-3.2882,-2.08408,-12.076,0,-11.775	1/1:160:0,160,0:0:0:160,0:5589,0:-502.393,-48.1648,0,-502.393,-48.1648,-502.393	1/2:53:0,29,24:0:0:29,24:1018,839:-151.144,-68.4817,-59.7518,-83.0117,0,-75.787	1/2:31:0,15,15:0:0:15,15:516,521:-84.0367,-42.3362,-37.8208,-41.793,0,-37.2775	.:.:.:.:.:.:.:.	1/2:89:0,46,43:0:0:46,43:1623,1519:-255.511,-123.802,-109.955,-132.061,0,-119.117	1/2:16:0,7,9:0:0:7,9:248,316:-46.2067,-26.0319,-23.9247,-20.5271,0,-17.8179	1/2:85:0,42,43:0:0:42,43:1492,1504:-243.593,-122.405,-109.762,-121.539,0,-108.595	1/2:25:0,12,12:0:0:12,12:415,424:-68.0459,-34.5017,-30.8893,-33.5496,0,-29.9373	1/1:22:0,22,0:0:0:22,0:773,0:-69.726,-6.62266,0,-69.726,-6.62266,-69.726	1/2:63:0,32,30:0:0:32,30:1130,1057:-177.977,-86.0394,-76.4064,-92.0547,0,-83.0238	1/1:81:0,79,0:0:0:79,0:2789,0:-249.018,-23.7814,0,-249.018,-23.7814,-249.018	1/1:108:0,106,2:0:0:106,2:3717,72:-333.276,-31.9092,0,-327.406,-25.6794,-326.804	1/2:43:0,16,27:0:0:16,27:572,951:-124.303,-77.7035,-72.887,-46.9549,0,-38.8271	1/1:56:0,56,0:0:0:56,0:1962,0:-176.364,-16.8577,0,-176.364,-16.8577,-176.364	1/2:114:0,50,63:0:0:50,63:1722,2237:-321.632,-181.866,-166.814,-139.761,0,-120.796	1/2:8:0,4,4:0:0:4,4:144,144:-23.8379,-12.0999,-10.8958,-12.0976,0,-10.8935	1/2:103:0,60,42:0:0:60,42:2118,1484:-292.104,-120.397,-102.335,-171.752,0,-159.109	1/1:37:0,36,0:0:0:36,0:1271,0:-114.277,-10.8371,0,-114.277,-10.8371,-114.277	1/1:1:0,1,0:0:0:1,0:32,0:-3.19568,-0.30103,0,-3.19568,-0.30103,-3.19568	1/1:119:0,118,0:0:0:118,0:4161,0:-372.768,-35.5215,0,-372.768,-35.5215,-372.768	1/2:16:0,7,9:0:0:7,9:229,306:-43.1173,-24.6414,-22.5342,-18.8056,0,-16.0963	1/1:5:0,5,0:0:0:5,0:176,0:-16.1795,-1.50515,0,-16.1795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chr10	5029262	.	C	G	150880	PASS	AB=0.519296;ABP=17.3403;AC=143;AF=0.760638;AN=188;AO=7083;CIGAR=1X;DP=9230;DPB=9230;DPRA=33.0717;EPP=15149.9;EPPR=4591.53;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9232;MQMR=59.9262;NS=94;NUMALT=1;ODDS=4.80861;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=252716;QR=75936;RO=2141;RPL=27;RPP=15149.9;RPPR=4591.53;RPR=7056;RUN=1;SAF=7083;SAP=15383.5;SAR=0;SRF=2141;SRP=4652.13;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:16,20:16:572:20:720:-54.2917,0,-40.9763	1/1:179:0,179:0:0:179:6384:-574.647,-53.8844,0	1/1:130:0,130:0:0:130:4640:-417.762,-39.1339,0	0/1:159:67,92:67:2374:92:3288:-248.272,0,-166.048	0/1:84:40,44:40:1432:44:1549:-114.281,0,-103.889	0/1:70:41,29:41:1450:29:1036:-72.4818,0,-109.719	0/1:180:78,102:78:2776:102:3656:-274.999,0,-195.896	0/1:126:55,71:55:1958:71:2535:-190.471,0,-138.564	0/1:123:74,49:74:2606:49:1716:-117.695,0,-197.76	0/1:112:40,72:40:1419:72:2573:-198.099,0,-94.2913	1/1:52:0,52:0:0:52:1844:-166.15,-15.6536,0	0/1:61:32,29:32:1140:29:1043:-75.8154,0,-84.5464	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:70:1,69:1:36:69:2476:-219.49,-17.4738,0	1/1:54:0,54:0:0:54:1925:-173.525,-16.2556,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:48:27,21:27:956:21:752:-53.5568,0,-71.9063	0/1:199:79,120:79:2790:120:4267:-324.3,0,-191.437	0/1:171:73,98:73:2608:98:3485:-262.385,0,-183.491	1/1:159:0,159:0:0:159:5697:-512.845,-47.8638,0	1/1:107:0,107:0:0:107:3824:-344.357,-32.2102,0	1/1:167:2,165:2:72:165:5841:-518.963,-43.4353,0	0/1:79:37,42:37:1301:42:1508:-112.233,0,-93.6079	1/1:281:0,281:0:0:281:9967:-896.457,-84.5894,0	0/1:207:101,106:101:3566:106:3789:-278.894,0,-258.83	0/1:35:21,14:21:752:14:494:-34.257,0,-57.4702	1/1:339:1,338:1:21:338:12062:-1082.9,-99.9492,0	0/1:130:62,68:62:2187:68:2417:-178.651,0,-157.828	1/1:149:0,149:0:0:149:5287:-475.964,-44.8535,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:13:3,10:3:108:10:352:-28.1048,0,-6.16178	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	1/1:189:0,189:0:0:189:6771:-609.461,-56.8947,0	0/1:123:73,50:73:2582:50:1780:-123.454,0,-195.6	0/1:77:35,42:35:1243:42:1504:-112.475,0,-88.9946	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:118:58,60:58:2042:60:2148:-158.066,0,-147.752	0/1:54:27,27:27:943:27:972:-71.5423,0,-68.9276	0/1:121:60,61:60:2147:61:2182:-160.221,0,-157.072	0/1:77:33,44:33:1175:44:1580:-119.312,0,-82.8776	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	0/1:109:44,65:44:1533:65:2316:-175.888,0,-105.434	1/1:115:0,115:0:0:115:4104:-369.544,-34.6185,0	1/1:168:0,168:0:0:168:5995:-539.654,-50.573,0	0/1:80:24,56:24:847:56:2016:-157.566,0,-52.4663	1/1:124:0,124:0:0:124:4414:-397.429,-37.3277,0	0/1:183:88,95:88:3127:95:3395:-250.662,0,-226.569	0/1:18:12,6:12:424:6:201:-12.9984,0,-33.0779	0/1:144:87,57:87:3099:57:2038:-140.343,0,-235.745	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:127:0,127:0:0:127:4539:-408.547,-38.2308,0	0/1:83:40,43:40:1436:43:1531:-113.097,0,-104.552	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:27:8,19:8:280:19:684:-53.7625,0,-17.4115	0/1:80:31,49:31:1103:49:1748:-133.33,0,-75.4974	1/1:90:1,89:1:36:89:3178:-282.645,-23.4944,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:146:67,79:67:2369:79:2829:-210.895,0,-169.517	1/1:215:4,211:4:140:211:7493:-660.908,-51.7769,0	0/1:89:34,55:34:1195:55:1953:-149.252,0,-81.0629	1/1:74:1,73:1:36:73:2590:-229.748,-18.6779,0	0/1:166:88,78:88:3123:78:2769:-199.477,0,-231.327	1/1:119:0,118:0:0:118:4187:-376.65,-35.5215,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	1/1:126:0,125:0:0:125:4481:-403.09,-37.6288,0	1/1:72:0,72:0:0:72:2565:-231.096,-21.6742,0	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	1/1:90:0,90:0:0:90:3185:-286.871,-27.0927,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:240:0,240:0:0:240:8522:-766.948,-72.2472,0	1/1:170:1,169:1:36:169:6029:-539.001,-47.5768,0	1/1:40:0,40:0:0:40:1440:-129.828,-12.0412,0	1/1:127:1,126:1:36:126:4513:-402.737,-34.6325,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:133:0,133:0:0:133:4763:-428.827,-40.037,0	0/1:129:79,49:79:2796:49:1752:-119.072,0,-212.982	0/1:306:140,166:140:4970:166:5909:-439.801,0,-355.335	1/1:87:0,87:0:0:87:3113:-280.259,-26.1896,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	0/1:134:69,65:69:2467:65:2336:-170.161,0,-181.945	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:70:40,30:40:1436:30:1070:-75.5399,0,-108.466	0/1:64:23,38:23:820:38:1364:-104.338,0,-55.4003	0/1:39:21,18:21:748:18:644:-46.5504,0,-55.9051	0/1:88:53,35:53:1876:35:1256:-86.8546,0,-142.628	0/1:58:34,24:34:1207:24:864:-60.6228,0,-91.4755	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	1/1:101:0,101:0:0:101:3590:-323.308,-30.404,0
chr10	5105576	.	T	C	151757	PASS	AB=0.415244;ABP=357.482;AC=143;AF=0.760638;AN=188;AO=7442;CIGAR=1X;DP=10805;DPB=10805;DPRA=0;EPP=16119.7;EPPR=6868.91;GTI=6;LEN=1;MEANALT=1.07447;MQM=59.9403;MQMR=59.1523;NS=94;NUMALT=1;ODDS=1.28279;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263810;QR=120002;RO=3355;RPL=5;RPP=16119.7;RPPR=6868.91;RPR=7437;RUN=1;SAF=7442;SAP=16163.1;SAR=0;SRF=3355;SRP=7288.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:23,18:23:824:18:635:-45.0637,0,-62.1234	1/1:173:1,172:1:36:172:6075:-543.258,-48.4799,0	1/1:147:0,147:0:0:147:5214:-469.2,-44.2514,0	0/1:280:173,107:173:6196:107:3769:-255.117,0,-473.225	0/1:88:54,34:54:1906:34:1212:-82.8957,0,-144.934	0/1:68:35,33:35:1256:33:1168:-84.9553,0,-92.8507	0/1:183:97,86:97:3484:86:3037:-218.473,0,-258.581	0/1:189:121,67:121:4305:67:2375:-157.055,0,-330.381	0/1:154:72,82:72:2576:82:2896:-214.46,0,-185.628	0/1:119:77,42:77:2768:42:1500:-99.472,0,-213.505	1/1:33:0,33:0:0:33:1178:-106.327,-9.93399,0	0/1:73:44,29:44:1584:29:1002:-68.5135,0,-120.849	1/1:69:0,69:0:0:69:2431:-219.029,-20.7711,0	1/1:81:0,81:0:0:81:2879:-259.347,-24.3834,0	1/1:58:0,58:0:0:58:2051:-184.861,-17.4597,0	1/1:92:0,92:0:0:92:3223:-290.275,-27.6948,0	1/1:55:1,54:1:36:54:1924:-169.837,-12.9584,0	1/1:50:0,50:0:0:50:1768:-159.403,-15.0515,0	0/1:29:12,17:12:432:17:604:-45.9607,0,-30.4477	0/1:211:128,83:128:4573:83:2947:-201.948,0,-346.928	0/1:134:75,59:75:2680:59:2100:-148.932,0,-201.075	1/1:120:0,120:0:0:120:4279:-385.289,-36.1236,0	1/1:111:0,111:0:0:111:3942:-354.974,-33.4143,0	1/1:171:14,157:14:500:157:5586:-457.557,-6.18948,0	0/1:115:75,40:75:2684:40:1430:-94.3616,0,-207.144	1/1:231:1,228:1:36:228:8068:-722.39,-65.6974,0	0/1:259:163,96:163:5800:96:3418:-229.839,0,-443.986	0/1:26:14,12:14:504:12:428:-31.032,0,-37.8698	1/1:388:0,387:0:0:387:13813:-1242.58,-116.499,0	0/1:235:122,113:122:4376:113:3964:-286.214,0,-323.193	1/1:209:0,209:0:0:209:7422:-668.03,-62.9153,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:28:16,12:16:567:12:415:-29.2501,0,-42.9295	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3789	1/1:185:0,185:0:0:185:6550:-589.587,-55.6906,0	0/1:315:188,127:188:6712:127:4491:-309.501,0,-509.161	0/1:37:22,15:22:792:15:540:-37.7984,0,-60.4598	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:211:116,95:116:4140:95:3336:-236.938,0,-309.117	0/1:29:17,12:17:612:12:432:-30.4913,0,-46.6633	0/1:212:137,75:137:4924:75:2632:-173.309,0,-378.507	0/1:50:26,24:26:928:24:852:-61.9489,0,-68.6314	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:180:99,81:99:3539:81:2889:-206.023,0,-264.377	1/1:153:0,153:0:0:153:5439:-489.636,-46.0576,0	1/1:170:2,168:2:72:168:5986:-532.012,-44.3384,0	0/1:193:129,64:129:4615:64:2267:-146.194,0,-356.056	1/1:127:4,123:4:144:123:4361:-379.353,-24.9172,0	0/1:266:138,128:138:4960:128:4556:-330.135,0,-366.132	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:204:142,62:142:5076:62:2207:-137.467,0,-395.144	1/1:73:0,73:0:0:73:2608:-234.968,-21.9752,0	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	1/1:105:1,104:1:36:104:3705:-330.054,-28.0099,0	0/1:95:51,44:51:1821:44:1572:-113.174,0,-135.565	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:35:19,16:19:676:16:559:-40.1016,0,-50.6062	0/1:142:68,74:68:2436:74:2594:-190.964,0,-175.956	1/1:135:1,133:1:36:133:4709:-420.394,-37.0796,0	0/1:8:4,4:4:144:4:136:-10.1673,0,-10.8945	0/1:248:150,98:150:5339:98:3477:-238.487,0,-405.231	1/1:246:0,245:0:0:245:8679:-780.893,-73.7524,0	0/1:95:44,51:44:1576:51:1816:-135.123,0,-113.499	1/1:92:0,92:0:0:92:3267:-294.252,-27.6948,0	0/1:273:179,94:179:6400:94:3307:-215.668,0,-493.318	1/1:196:5,191:5:180:191:6762:-592.096,-42.4507,0	1/1:20:1,19:1:36:19:684:-58.2921,-2.42233,0	1/1:81:0,81:0:0:81:2845:-256.29,-24.3834,0	1/1:90:0,90:0:0:90:3170:-285.525,-27.0927,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:142:0,142:0:0:142:4983:-448.624,-42.7463,0	1/1:60:0,60:0:0:60:2117:-190.798,-18.0618,0	1/1:215:0,215:0:0:215:7634:-687.103,-64.7215,0	1/1:119:0,119:0:0:119:4246:-382.321,-35.8226,0	1/1:182:0,182:0:0:182:6457:-581.221,-54.7875,0	1/1:67:2,65:2:72:65:2308:-201.145,-13.3323,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:99:0,99:0:0:99:3527:-317.64,-29.802,0	0/1:120:80,40:80:2847:40:1420:-91.9738,0,-220.154	0/1:300:200,100:200:7167:100:3559:-230.203,0,-554.647	1/1:121:0,121:0:0:121:4279:-385.29,-36.4246,0	1/1:54:1,53:1:36:53:1870:-164.969,-12.6573,0	1/1:67:0,67:0:0:67:2375:-214.002,-20.169,0	0/1:119:53,66:53:1900:66:2321:-173.327,0,-135.444	1/1:42:0,42:0:0:42:1467:-132.324,-12.6433,0	0/1:57:27,30:27:972:30:1043:-77.0201,0,-70.5187	0/1:68:36,32:36:1283:32:1148:-83.1536,0,-93.4932	0/1:37:19,18:19:680:18:644:-47.1525,0,-50.3829	0/1:98:39,59:39:1400:59:2081:-158.059,0,-96.7786	0/1:39:23,16:23:824:16:576:-40.4348,0,-62.727	1/1:99:0,97:0:0:97:3433:-308.814,-29.1999,0	1/1:62:0,62:0:0:62:2214:-199.523,-18.6639,0
chr10	5105728	.	G	A	43593.2	PASS	AB=0.505618;ABP=4.40102;AC=44;AF=0.236559;AN=186;AO=2578;CIGAR=1X;DP=10587;DPB=10587;DPRA=1.13711;EPP=5601.07;EPPR=17381.3;GTI=0;LEN=1;MEANALT=1.04;MQM=59.9984;MQMR=59.9944;NS=93;NUMALT=1;ODDS=2.92966;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92225;QR=285640;RO=8007;RPL=0;RPP=5601.07;RPPR=17381.3;RPR=2578;RUN=1;SAF=0;SAP=5601.07;SAR=2578;SRF=0;SRP=17390;SRR=8007;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:31,10:31:1108:10:352:-19.676,0,-87.6888	0/0:112:112,0:112:3993:0:0:0,-33.7154,-359.56	0/0:96:96,0:96:3376:0:0:0,-28.8989,-304.058	0/1:264:146,118:146:5214:118:4210:-299.607,0,-389.927	0/1:91:55,36:55:1967:36:1269:-87.117,0,-149.911	0/1:58:24,34:24:860:34:1224:-93.0073,0,-60.2621	0/1:104:55,49:55:1968:49:1751:-126.565,0,-146.088	0/1:182:92,90:92:3283:90:3217:-234.963,0,-240.902	0/1:132:50,81:50:1792:81:2885:-220.091,0,-121.768	0/1:103:53,50:53:1895:50:1778:-129.295,0,-139.821	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:53:31,22:31:1112:22:788:-55.2902,0,-84.4368	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/0:97:97,0:97:3458:0:0:0,-29.1999,-311.432	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:62:62,0:62:2206:0:0:0,-18.6639,-198.804	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:21:10,11:10:352:11:388:-28.9352,0,-25.6966	0/1:266:139,127:139:4978:127:4539:-328.603,0,-368.093	0/1:134:76,58:76:2717:58:2080:-147.132,0,-204.434	0/0:180:180,0:180:6426:0:0:0,-54.1854,-578.428	0/0:220:220,0:220:7831:0:0:0,-66.2266,-704.822	0/0:145:138,7:138:4931:7:252:0,-20.6204,-420.912	0/1:108:32,76:32:1135:76:2720:-212.532,0,-69.9468	0/0:384:384,0:384:13724:0:0:0,-115.596,-1234.94	0/1:256:117,139:117:4184:139:4991:-372.272,0,-299.676	0/1:32:18,14:18:644:14:500:-35.7032,0,-48.6576	0/0:338:338,0:338:12103:0:0:0,-101.748,-1089.12	0/1:173:92,81:92:3299:81:2908:-209.877,0,-245.05	0/0:185:185,0:185:6611:0:0:0,-55.6905,-595.071	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:16:7,9:7:252:9:315:-23.8707,0,-18.2125	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:188:188,0:188:6680:0:0:0,-56.5936,-601.276	0/1:290:130,160:130:4631:160:5739:-429.326,0,-329.426	0/1:36:20,16:20:716:16:576:-41.3379,0,-53.9306	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:215:122,93:122:4347:93:3324:-234.656,0,-326.682	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	0/1:211:106,105:106:3781:105:3776:-276.52,0,-276.971	0/1:45:24,21:24:856:21:735:-52.9251,0,-63.8148	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/1:149:45,104:45:1592:104:3705:-288.798,0,-98.7141	0/0:95:95,0:95:3392:0:0:0,-28.5978,-305.496	0/0:261:261,0:261:9292:0:0:0,-78.5688,-836.252	0/1:175:90,85:90:3203:85:3044:-221.509,0,-235.814	0/0:127:127,0:127:4511:0:0:0,-38.2308,-406.141	0/1:206:91,115:91:3234:115:4128:-309.691,0,-229.27	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:126:69,57:69:2476:57:2044:-146.302,0,-185.164	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:176:176,0:176:6258:0:0:0,-52.9813,-563.319	0/1:73:32,41:32:1128:41:1468:-110.441,0,-79.8531	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:110:47,63:47:1688:63:2264:-170.909,0,-119.094	0/0:131:129,2:129:4619:2:68:0,-32.9772,-409.415	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	0/1:220:112,108:112:4012:108:3856:-281.007,0,-295.042	0/0:290:289,1:289:10338:1:36:0,-83.7004,-926.742	0/1:63:39,24:39:1392:24:864:-59.1177,0,-106.614	0/0:121:121,0:121:4336:0:0:0,-36.4246,-390.415	0/1:226:113,113:113:4009:113:4068:-298.272,0,-292.968	0/0:129:128,1:128:4568:1:36:0,-35.2346,-407.686	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/0:111:111,0:111:3950:0:0:0,-33.4143,-355.689	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:127:127,0:127:4502:0:0:0,-38.2308,-405.347	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:205:205,0:205:7261:0:0:0,-61.7111,-653.549	0/0:173:173,0:173:6152:0:0:0,-52.0782,-553.782	0/0:168:166,1:166:5909:1:36:0,-47.0336,-528.321	0/0:92:91,1:91:3256:1:36:0,-24.0965,-289.663	.:.:.:.:.:.:.:.	0/0:148:148,0:148:5280:0:0:0,-44.5524,-475.335	0/1:143:78,65:78:2796:65:2316:-165.651,0,-208.833	0/1:314:148,166:148:5299:166:5933:-439.55,0,-382.521	0/0:117:117,0:117:4187:0:0:0,-35.2205,-377.011	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:78:78,0:78:2749:0:0:0,-23.4803,-247.65	0/1:107:42,65:42:1493:65:2336:-178.289,0,-102.452	0/0:43:43,0:43:1520:0:0:0,-12.9443,-137.09	0/1:72:33,39:33:1175:39:1380:-102.822,0,-84.3828	0/1:62:39,23:39:1400:23:824:-55.8195,0,-107.635	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/1:55:33,22:33:1158:22:779:-53.8754,0,-87.9684	0/1:36:11,25:11:392:25:887:-69.3102,0,-24.783	0/0:172:172,0:172:6126:0:0:0,-51.7772,-551.439	0/0:68:68,0:68:2416:0:0:0,-20.47,-217.694
chr10	5133013	.	ACA	GCG,GCA	47529.6	PASS	AB=0.576857,0.423143;ABP=62.4239,62.4239;AC=142,46;AF=0.755319,0.244681;AN=188;AO=2691,699;CIGAR=1X1M1X,1X2M;DP=3395;DPB=3918;DPRA=1.28378,0.865401;EPP=5846.44,1393.38;EPPR=0;GTI=10;LEN=3,1;MEANALT=1.54945,1.95833;MQM=27.4415,31.7983;MQMR=0;NS=94;NUMALT=2;ODDS=1799.07;PAIRED=0,0;PAIREDR=0;PAO=784.5,784.5;PQA=26880.5,26880.5;PQR=0;PRO=0;QA=94821,22178;QR=0;RO=0;RPL=2691,699;RPP=5846.44,1520.87;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,15;SAP=5846.44,1393.38;SAR=2691,684;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,19,8:0:0:19,8:672,252:-54.6561,-18.2342,-12.5147,-36.541,0,-34.1327	1/1:23:0,23,0:0:0:23,0:816,0:-48.1124,-6.92369,0,-48.1124,-6.92369,-48.1124	1/1:61:0,61,0:0:0:61,0:2175,0:-134.263,-18.3628,0,-134.263,-18.3628,-134.263	1/2:48:0,41,7:0:0:41,7:1456,226:-107.007,-15.9177,-3.57548,-90.671,0,-88.5638	1/2:8:0,3,5:0:0:3,5:108,160:-17.388,-11.2077,-10.3046,-5.99379,0,-4.48864	1/2:5:0,4,1:0:0:4,1:136,33:-9.9132,-2.69805,-1.49393,-7.52167,0,-7.22064	1/2:12:0,10,2:0:0:10,2:360,64:-27.0038,-4.75605,-1.74575,-22.3912,0,-21.7891	1/2:30:0,25,5:0:0:25,5:875,165:-58.4086,-10.9967,-3.47097,-46.4196,0,-44.9145	1/2:30:0,21,9:0:0:21,9:719,296:-60.5008,-20.9831,-14.6615,-38.962,0,-36.2527	1/1:20:0,20,0:0:0:20,0:682,0:-49.7852,-6.0206,0,-49.7852,-6.0206,-49.7852	1/1:26:0,25,1:0:0:25,1:886,32:-62.7044,-7.52575,0,-60.3963,-4.92767,-60.0953	1/2:55:0,42,13:0:0:42,13:1498,410:-108.804,-28.358,-15.7147,-79.2938,0,-75.3804	1/1:85:0,85,0:0:0:85,0:3017,0:-183.862,-25.5876,0,-183.862,-25.5876,-183.862	1/1:29:0,29,0:0:0:29,0:1019,0:-63.6556,-8.72987,0,-63.6556,-8.72987,-63.6556	1/1:70:0,70,0:0:0:70,0:2483,0:-176.732,-21.0721,0,-176.732,-21.0721,-176.732	1/1:45:0,45,0:0:0:45,0:1605,0:-103.086,-13.5464,0,-103.086,-13.5464,-103.086	1/1:56:0,56,0:0:0:56,0:1978,0:-119.81,-16.8577,0,-119.81,-16.8577,-119.81	1/1:20:0,20,0:0:0:20,0:712,0:-39.6339,-6.0206,0,-39.6339,-6.0206,-39.6339	1/2:45:0,11,34:0:0:11,34:392,1097:-99.7462,-78.6945,-75.3832,-20.4448,0,-10.2098	1/2:23:0,19,4:0:0:19,4:675,128:-52.5308,-9.21057,-3.491,-43.3015,0,-42.0973	1/2:43:0,35,8:0:0:35,8:1248,256:-89.4786,-17.1829,-6.64683,-71.0179,0,-68.6097	1/1:16:0,16,0:0:0:16,0:565,0:-39.4941,-4.81648,0,-39.4941,-4.81648,-39.4941	1/1:34:0,34,0:0:0:34,0:1204,0:-85.7433,-10.235,0,-85.7433,-10.235,-85.7433	1/1:15:0,14,1:0:0:14,1:494,32:-30.6988,-4.21442,0,-28.3995,-1.61634,-28.0985	1/2:28:0,23,5:0:0:23,5:794,160:-58.6811,-11.6387,-4.71502,-47.137,0,-45.6318	1/1:59:0,59,0:0:0:59,0:2060,0:-143.473,-17.7608,0,-143.473,-17.7608,-143.473	1/1:39:0,35,4:0:0:35,4:1248,121:-82.0758,-10.5361,0,-73.3621,-2.52556,-72.1579	1/2:27:0,14,13:0:0:14,13:492,416:-57.7759,-29.08,-24.8655,-27.8014,0,-23.888	1/1:50:0,50,0:0:0:50,0:1749,0:-121.721,-15.0515,0,-121.721,-15.0515,-121.721	1/2:11:0,9,2:0:0:9,2:322,64:-23.0056,-4.18898,-1.47971,-18.4152,0,-17.8131	1/1:38:0,38,0:0:0:38,0:1352,0:-95.8838,-11.4391,0,-95.8838,-11.4391,-95.8838	1/1:5:0,4,0:0:0:4,0:139,0:-9.35767,-1.20412,0,-9.35767,-1.20412,-9.35767	2/2:40:0,3,37:0:0:3,37:100,1174:-95.6501,-89.5862,-88.6831,-11.1381,-4.8537,0	1/2:4:0,3,1:0:0:3,1:104,33:-8.38193,-2.69805,-1.79496,-5.97018,0,-5.66915	1/1:1:0,1,0:0:0:1,0:36,0:-2.46691,-0.30103,0,-2.46691,-0.30103,-2.46691	2/2:57:0,3,54:0:0:3,54:99,1734:-141.529,-135.883,-134.98,-16.2556,-10.3637,0	1/1:131:0,130,0:0:0:130,0:4533,0:-316.469,-39.1339,0,-316.469,-39.1339,-316.469	1/2:9:0,6,3:0:0:6,3:207,96:-19.0351,-7.01471,-5.20853,-12.1165,0,-11.2134	1/2:76:0,19,57:0:0:19,57:682,1844:-169.125,-132.612,-126.892,-35.6427,0,-18.484	2/2:38:0,0,38:0:0:0,38:0,1164:-94.8327,-94.8327,-94.8327,-11.4391,-11.4391,0	1/1:16:0,15,1:0:0:15,1:520,32:-33.7012,-4.51545,0,-31.3968,-1.91737,-31.0958	1/2:39:0,13,26:0:0:13,26:449,835:-85.4526,-59.192,-55.2786,-25.2221,0,-17.3953	1/2:45:0,28,17:0:0:28,17:963,535:-93.7151,-37.0816,-28.6528,-55.2985,0,-50.1809	1/2:32:0,19,13:0:0:19,13:677,398:-69.4413,-27.6031,-21.8835,-41.0369,0,-37.1235	1/1:63:0,63,0:0:0:63,0:2246,0:-159.356,-18.9649,0,-159.356,-18.9649,-159.356	1/2:32:0,20,12:0:0:20,12:696,372:-70.0323,-27.1413,-21.1207,-43.1692,0,-39.5568	1/1:36:0,36,0:0:0:36,0:1276,0:-76.897,-10.8371,0,-76.897,-10.8371,-76.897	1/1:42:0,42,0:0:0:42,0:1495,0:-106.162,-12.6433,0,-106.162,-12.6433,-106.162	1/1:25:0,24,1:0:0:24,1:850,32:-60.5628,-7.22472,0,-58.2546,-4.62664,-57.9535	1/1:30:0,30,0:0:0:30,0:1042,0:-75.0545,-9.0309,0,-75.0545,-9.0309,-75.0545	1/2:17:0,12,5:0:0:12,5:428,149:-37.4243,-11.0653,-7.4529,-26.6336,0,-25.1284	2/2:30:0,0,30:0:0:0,30:0,957:-78.295,-78.295,-78.295,-9.0309,-9.0309,0	1/2:19:0,15,4:0:0:15,4:538,132:-37.8839,-9.30837,-4.79292,-28.291,0,-27.0869	1/1:22:0,22,0:0:0:22,0:782,0:-54.0991,-6.62266,0,-54.0991,-6.62266,-54.0991	1/1:1:0,1,0:0:0:1,0:36,0:-2.46691,-0.30103,0,-2.46691,-0.30103,-2.46691	1/1:56:0,56,0:0:0:56,0:1995,0:-130.543,-16.8577,0,-130.543,-16.8577,-130.543	1/2:7:0,5,2:0:0:5,2:176,68:-16.0953,-5.22264,-3.71749,-10.9168,0,-10.3148	1/1:2:0,2,0:0:0:2,0:72,0:-5.19878,-0.60206,0,-5.19878,-0.60206,-5.19878	2/2:17:0,0,17:0:0:0,1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chr10	5149092	.	C	G	26371.6	PASS	AB=0.479604;ABP=15.057;AC=46;AF=0.25;AN=184;AO=1605;CIGAR=1X;DP=7142;DPB=7142;DPRA=0.97949;EPP=3488.22;EPPR=12017.8;GTI=4;LEN=1;MEANALT=1.04348;MQM=59.9333;MQMR=59.9758;NS=92;NUMALT=1;ODDS=0.575217;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57260;QR=197500;RO=5533;RPL=1605;RPP=3488.22;RPPR=12017.8;RPR=0;RUN=1;SAF=0;SAP=3488.22;SAR=1605;SRF=0;SRP=12017.8;SRR=5533;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:19,23:19:669:23:805:-60.1242,0,-47.8907	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/0:221:221,0:221:7886:0:0:0,-66.5276,-709.754	0/1:181:105,76:105:3726:76:2716:-190.197,0,-281.052	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	0/1:30:23,7:23:820:7:252:-13.9981,0,-65.0916	0/1:37:12,25:12:428:25:881:-68.4678,0,-27.7207	0/1:106:57,49:57:2037:49:1760:-126.775,0,-151.691	0/1:81:44,37:44:1584:37:1320:-94.7104,0,-118.278	0/1:69:39,30:39:1392:30:1047:-73.766,0,-104.808	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/1:100:43,57:43:1531:57:2032:-153.05,0,-107.979	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.43	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.274	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:20:6,14:6:216:14:498:-39.1344,0,-13.7699	0/1:142:78,64:78:2789:64:2284:-163.073,0,-208.502	0/1:132:65,66:65:2302:66:2334:-170.666,0,-167.791	0/0:86:86,0:86:3057:0:0:0,-25.8886,-275.358	0/0:103:103,0:103:3681:0:0:0,-31.0061,-331.492	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:82:42,40:42:1508:40:1436:-104.853,0,-111.33	0/0:230:230,0:230:8221:0:0:0,-69.2369,-739.902	0/1:238:141,97:141:5033:97:3480:-241.764,0,-381.471	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	0/0:188:188,0:188:6705:0:0:0,-56.5936,-603.525	0/1:93:42,51:42:1512:51:1821:-136.166,0,-108.379	0/0:105:105,0:105:3734:0:0:0,-31.6081,-336.259	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:170:170,0:170:6079:0:0:0,-51.1751,-547.212	0/1:116:56,60:56:2008:60:2123:-156.419,0,-146.074	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:80:42,38:42:1504:38:1348:-97.5379,0,-111.572	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/1:67:43,24:43:1528:24:864:-57.9136,0,-117.644	0/1:62:35,27:35:1260:27:972:-69.134,0,-95.0416	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/1:77:32,45:32:1118:45:1597:-120.839,0,-77.6734	0/0:94:93,0:93:3310:0:0:0,-27.9958,-297.905	0/0:108:107,1:107:3787:1:36:0,-28.913,-337.429	0/1:83:44,39:44:1576:39:1404:-101.674,0,-117.146	0/0:123:123,0:123:4393:0:0:0,-37.0267,-395.542	0/1:99:53,46:53:1885:46:1644:-118.446,0,-140.125	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:83:35,48:35:1226:48:1728:-130.82,0,-85.6542	0/0:57:57,0:57:2037:0:0:0,-17.1587,-183.6	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:141:141,0:141:5007:0:0:0,-42.4452,-450.776	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:25:15,10:15:525:10:356:-24.8555,0,-40.0523	0/0:90:90,0:90:3223:0:0:0,-27.0927,-290.291	.:.:.:.:.:.:.:.	0/1:179:90,89:90:3190:89:3192:-233.619,0,-233.438	0/0:188:188,0:188:6722:0:0:0,-56.5936,-605.052	0/1:54:32,22:32:1148:22:792:-55.3501,0,-87.3742	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.071	0/1:190:97,93:97:3441:93:3300:-239.94,0,-252.708	0/0:144:143,0:143:5125:0:0:0,-43.0473,-461.026	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8542	0/0:22:22,0:22:777:0:0:0,-6.62266,-70.2504	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:124:124,0:124:4437:0:0:0,-37.3277,-399.499	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:149:149,0:149:5318:0:0:0,-44.8535,-478.752	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.567	0/0:89:87,2:87:3120:2:72:0,-19.9549,-274.189	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:83:83,0:83:2953:0:0:0,-24.9855,-265.958	0/1:121:60,61:60:2141:61:2140:-155.505,0,-156.531	0/1:160:81,79:81:2870:79:2811:-205.06,0,-210.367	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:120:66,54:66:2349:54:1936:-138.39,0,-175.544	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:72:39,32:39:1400:32:1140:-81.1682,0,-104.566	0/1:91:47,44:47:1688:44:1580:-115.098,0,-124.813	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:57:29,28:29:1032:28:999:-73.0658,0,-76.0348	0/1:71:25,46:25:900:46:1648:-127.235,0,-59.9479	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/0:92:92,0:92:3261:0:0:0,-27.6948,-293.709
chr10	5223131	.	CAGTGGCAT	CAGTTGCAT	100055	PASS	AB=0.469297;ABP=30.612;AC=140;AF=0.744681;AN=188;AO=4764;CIGAR=4M1X4M;DP=6604;DPB=6604;DPRA=35.8696;EPP=10226.7;EPPR=3619.42;GTI=2;LEN=1;MEANALT=1.69565;MQM=59.992;MQMR=59.9688;NS=94;NUMALT=1;ODDS=1.04438;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170221;QR=61861;RO=1764;RPL=0;RPP=10347.9;RPPR=3747.12;RPR=4764;RUN=1;SAF=4750;SAP=10226.7;SAR=14;SRF=1749;SRP=3704.31;SRR=15;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:14,18:14:484:18:631:-47.1238,0,-33.8971	1/1:43:0,43:0:0:43:1530:-137.992,-12.9443,0	1/1:195:0,194:0:0:194:6938:-624.136,-58.3998,0	0/1:139:67,70:67:2354:70:2499:-183.61,0,-170.569	0/1:19:9,10:9:316:10:360:-27.0247,0,-23.0596	0/1:46:24,21:24:843:21:748:-53.8442,0,-62.3883	0/1:123:66,56:66:2338:56:2008:-143.908,0,-173.597	0/1:82:46,36:46:1608:36:1296:-92.2595,0,-120.324	0/1:99:49,47:49:1716:47:1688:-122.948,0,-125.464	0/1:61:30,30:30:1057:30:1080:-79.0916,0,-77.0196	1/1:31:0,31:0:0:31:1107:-99.9402,-9.33193,0	0/1:116:66,47:66:2352:47:1660:-115.315,0,-177.57	1/1:81:0,77:0:0:77:2746:-247.065,-23.1793,0	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	1/1:30:0,27:0:0:27:968:-87.1016,-8.12781,0	0/1:23:10,13:10:351:13:464:-35.1738,0,-25.0041	0/1:116:63,50:63:2205:50:1800:-127.906,0,-164.34	0/1:172:116,55:116:4053:55:1964:-125.258,0,-313.19	1/1:90:0,88:0:0:88:3151:-283.455,-26.4906,0	1/1:92:0,92:0:0:92:3274:-294.88,-27.6948,0	0/1:44:5,36:5:174:36:1284:-103.162,0,-3.3041	0/1:62:38,24:38:1316:24:855:-58.6063,0,-100.074	1/1:226:2,221:2:72:221:7864:-700.982,-60.6315,0	0/1:225:101,124:101:3563:124:4430:-331.082,0,-253.15	0/1:34:16,18:16:562:18:648:-48.4169,0,-40.675	1/1:163:0,162:0:0:162:5782:-520.294,-48.7669,0	0/1:72:40,31:40:1390:31:1103:-77.847,0,-103.662	1/1:63:0,62:0:0:62:2207:-198.535,-18.6639,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7769	1/1:187:1,185:1:33:185:6627:-593.248,-52.982,0	0/1:109:61,48:61:2102:48:1705:-120.922,0,-156.636	0/1:39:17,21:17:598:21:747:-55.8605,0,-42.4539	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:102:54,48:54:1900:48:1711:-123.57,0,-140.573	0/1:32:21,11:21:732:11:392:-25.9871,0,-56.5687	0/1:106:52,54:52:1828:54:1922:-141.346,0,-132.892	0/1:64:37,26:37:1300:26:928:-64.5137,0,-97.9769	1/1:53:0,52:0:0:52:1859:-167.337,-15.6536,0	0/1:124:61,63:61:2120:63:2252:-165.615,0,-153.742	1/1:65:1,64:1:36:64:2287:-202.493,-15.9687,0	1/1:87:0,87:0:0:87:3112:-280.307,-26.1896,0	0/1:72:45,27:45:1565:27:968:-65.7632,0,-119.464	1/1:60:0,60:0:0:60:2139:-192.777,-18.0618,0	0/1:51:28,23:28:984:23:824:-59.1308,0,-73.521	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:75:32,42:32:1114:42:1504:-113.019,0,-77.9294	1/1:50:0,50:0:0:50:1775:-160.032,-15.0515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:131:0,126:0:0:126:4483:-403.31,-37.9298,0	0/1:28:17,11:17:602:11:396:-27.5539,0,-46.0813	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:5:2,3:2:66:3:108:-8.57002,0,-4.7628	0/1:49:38,11:38:1347:11:396:-21.2323,0,-106.78	1/1:81:0,80:0:0:80:2868:-257.997,-24.0824,0	0/0:2:2,0:2:65:0:0:0,-0.60206,-6.17303	0/1:104:41,62:41:1447:62:2224:-169.206,0,-99.2975	1/1:108:0,106:0:0:106:3782:-340.278,-31.9092,0	0/1:46:22,24:22:764:24:860:-63.8745,0,-55.1244	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:136:74,61:74:2587:61:2196:-156.906,0,-192.081	1/1:111:3,105:3:108:105:3767:-329.153,-22.7959,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:38:0,37:0:0:37:1324:-119.248,-11.1381,0	1/1:32:0,31:0:0:31:1108:-99.8164,-9.33193,0	1/1:75:0,74:0:0:74:2635:-237.195,-22.2762,0	1/1:78:0,77:0:0:77:2760:-248.282,-23.1793,0	1/1:105:0,104:0:0:104:3679:-330.954,-31.3071,0	1/1:90:0,89:0:0:89:3180:-286.213,-26.7917,0	1/1:76:0,76:0:0:76:2698:-243.059,-22.8783,0	0/1:40:10,28:10:356:28:1008:-79.2374,0,-20.5831	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:56:1,54:1:35:54:1944:-171.732,-13.4129,0	0/1:112:59,51:59:2077:51:1832:-131.76,0,-153.8	0/1:158:78,78:78:2752:78:2795:-204.508,0,-200.641	1/1:75:0,75:0:0:75:2692:-242.522,-22.5773,0	1/1:78:0,76:0:0:76:2728:-245.427,-22.8783,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:127:54,71:54:1896:71:2547:-191.491,0,-132.93	1/1:27:0,27:0:0:27:950:-85.8134,-8.12781,0	0/1:86:51,34:51:1768:34:1211:-83.4744,0,-133.581	0/1:67:34,33:34:1195:33:1180:-86.339,0,-87.6862	0/1:30:13,16:13:464:16:567:-42.2714,0,-33.0082	0/1:63:36,26:36:1255:26:927:-64.7238,0,-94.2284	0/1:66:49,17:49:1727:17:603:-34.7315,0,-135.848	1/1:68:0,67:0:0:67:2382:-214.277,-20.169,0	1/1:101:0,100:0:0:100:3588:-322.875,-30.103,0
chr10	5223217	.	A	T	34103.8	PASS	AB=0.517736;ABP=13.4859;AC=45;AF=0.239362;AN=188;AO=1995;CIGAR=1X;DP=8010;DPB=8010;DPRA=1.09642;EPP=4309.08;EPPR=13038.4;GTI=0;LEN=1;MEANALT=1.07843;MQM=59.9649;MQMR=59.9141;NS=94;NUMALT=1;ODDS=1.81764;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71401;QR=214847;RO=6007;RPL=1992;RPP=4309.08;RPPR=13038.4;RPR=3;RUN=1;SAF=0;SAP=4335.1;SAR=1995;SRF=0;SRP=13047;SRR=6007;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:13,22:13:459:22:784:-60.3479,0,-31.108	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.933	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.606	0/1:102:34,68:34:1220:68:2421:-187.44,0,-79.4017	0/1:25:9,16:9:316:16:568:-43.9261,0,-21.2531	0/1:43:19,24:19:676:24:856:-64.4168,0,-48.2237	0/1:81:43,38:43:1540:38:1360:-98.3172,0,-114.51	0/1:139:79,60:79:2827:60:2149:-151.834,0,-212.823	0/1:56:38,18:38:1356:18:648:-41.7942,0,-105.475	0/1:124:55,69:55:1968:69:2476:-185.766,0,-140.065	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.191	0/1:93:43,49:43:1535:49:1750:-129.729,0,-110.388	0/0:97:95,0:95:3404:0:0:0,-28.5978,-306.215	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:199:199,0:199:7091:0:0:0,-59.905,-638.237	0/0:92:91,1:91:3259:1:36:0,-24.0965,-289.923	0/1:59:37,22:37:1324:22:788:-53.484,0,-101.701	0/1:120:58,62:58:2065:62:2228:-164.66,0,-149.982	0/1:117:56,61:56:2000:61:2192:-162.325,0,-145.053	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.0725	0/0:82:80,2:80:2860:2:72:0,-17.8477,-250.796	0/1:50:22,28:22:777:28:1006:-75.8047,0,-55.1989	0/0:210:210,0:210:7528:0:0:0,-63.2163,-677.38	0/1:164:82,82:82:2916:82:2925:-214.106,0,-213.302	0/1:46:23,23:23:828:23:828:-60.9967,0,-60.9967	0/0:177:177,0:177:6332:0:0:0,-53.2823,-569.969	0/1:124:57,67:57:2022:67:2404:-179.289,0,-144.921	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:243:243,0:243:8688:0:0:0,-73.1503,-781.912	0/1:169:87,81:87:3112:81:2889:-209.352,0,-229.409	0/1:102:46,55:46:1631:55:1972:-146.991,0,-116.124	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/1:133:63,70:63:2256:70:2516:-186.655,0,-163.266	0/1:39:17,22:17:612:22:792:-59.8655,0,-43.6733	0/1:73:32,41:32:1148:41:1476:-111.161,0,-81.6546	0/1:92:44,48:44:1580:48:1720:-127.391,0,-113.76	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/1:67:37,30:37:1328:30:1072:-76.6234,0,-99.6532	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.193	0/0:145:144,1:144:5156:1:36:0,-40.0511,-460.578	0/1:115:61,54:61:2180:54:1936:-139.898,0,-161.848	0/0:157:156,0:156:5595:0:0:0,-46.9607,-503.311	0/1:45:19,26:19:680:26:924:-69.9313,0,-47.9828	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/1:103:52,51:52:1868:51:1824:-133.435,0,-137.393	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/1:11:4,7:4:144:7:244:-18.9881,0,-10.0023	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:49:27,22:27:968:22:792:-56.8552,0,-72.6869	0/0:160:156,4:156:5587:4:140:0,-35.2202,-489.381	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:155:85,70:85:3039:70:2501:-178.653,0,-227.08	0/0:124:124,0:124:4404:0:0:0,-37.3277,-396.534	0/1:91:50,41:50:1787:41:1464:-104.662,0,-133.716	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.453	0/1:115:54,61:54:1940:61:2192:-162.927,0,-140.258	0/0:85:84,1:84:3008:1:36:0,-21.9893,-267.353	0/0:43:42,0:42:1512:0:0:0,-12.6433,-136.015	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:133:133,0:133:4744:0:0:0,-40.037,-427.119	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.407	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.256	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.479	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.451	0/0:130:129,1:129:4619:1:21:0,-37.0473,-413.778	0/1:102:54,47:54:1918:47:1692:-121.803,0,-142.132	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.398	0/1:181:63,118:63:2252:118:4217:-325.212,0,-148.396	0/1:144:55,89:55:1961:89:3173:-242.44,0,-133.402	0/0:135:135,0:135:4828:0:0:0,-40.639,-434.616	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.761	0/1:178:92,86:92:3308:86:3077:-223.573,0,-244.354	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/1:68:28,40:28:992:40:1436:-109.068,0,-69.1244	0/1:86:43,43:43:1536:43:1544:-113.364,0,-112.645	0/1:97:63,34:63:2239:34:1216:-80.542,0,-171.808	0/1:122:65,57:65:2328:57:2040:-147.146,0,-173.054	0/1:69:16,53:16:568:53:1896:-150.147,0,-30.6808	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.222	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871
chr10	5223226	.	T	A	130029	PASS	AB=0.496437;ABP=3.42809;AC=143;AF=0.760638;AN=188;AO=6131;CIGAR=1X;DP=8052;DPB=8052;DPRA=0;EPP=13316.3;EPPR=4161.38;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9194;MQMR=59.9739;NS=94;NUMALT=1;ODDS=3.541;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219409;QR=67189;RO=1915;RPL=6131;RPP=13316.3;RPPR=4161.38;RPR=0;RUN=1;SAF=0;SAP=13316.3;SAR=6131;SRF=0;SRP=4161.38;SRR=1915;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:21,11:21:752:11:396:-26.3498,0,-58.3733	1/1:115:0,115:0:0:115:4105:-369.634,-34.6185,0	1/1:78:0,78:0:0:78:2799:-252.113,-23.4803,0	0/1:99:65,34:65:2277:34:1216:-79.9446,0,-175.39	0/1:24:15,9:15:532:9:320:-21.9176,0,-40.9884	0/1:42:23,19:23:816:19:684:-49.2471,0,-61.1185	0/1:77:34,43:34:1200:43:1548:-116.434,0,-85.1263	0/1:143:61,82:61:2168:82:2948:-222.503,0,-152.34	0/1:55:17,38:17:608:38:1353:-105.512,0,-38.4954	0/1:121:65,56:65:2252:56:2008:-144.566,0,-166.513	1/1:81:0,81:0:0:81:2899:-261.143,-24.3834,0	0/1:93:44,49:44:1550:49:1746:-129.425,0,-111.792	1/1:99:0,99:0:0:99:3534:-318.269,-29.802,0	1/1:112:0,112:0:0:112:4011:-361.178,-33.7154,0	1/1:69:0,69:0:0:69:2484:-223.813,-20.7711,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:207:0,207:0:0:207:7377:-663.961,-62.3132,0	1/1:94:1,93:1:36:93:3323:-295.681,-24.6985,0	0/1:58:21,37:21:729:37:1328:-102.362,0,-48.469	0/1:120:60,59:60:2057:59:2104:-153.442,0,-149.211	0/1:117:61,56:61:2096:56:2004:-145.413,0,-153.684	1/1:64:0,64:0:0:64:2277:-205.191,-19.2659,0	1/1:22:0,22:0:0:22:792:-71.5495,-6.62266,0	1/1:83:1,82:1:36:82:2940:-261.231,-21.3872,0	0/1:50:28,22:28:962:22:784:-55.8324,0,-71.8352	1/1:215:0,215:0:0:215:7724:-695.008,-64.7215,0	0/1:162:78,84:78:2709:84:3008:-222.176,0,-195.274	0/1:45:21,24:21:733:24:855:-63.7238,0,-52.7433	1/1:179:0,179:0:0:179:6428:-578.56,-53.8844,0	0/1:118:64,54:64:2257:54:1921:-137.644,0,-167.871	1/1:88:0,88:0:0:88:3152:-283.905,-26.4906,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:247:0,246:0:0:246:8815:-792.973,-74.0534,0	0/1:163:75,88:75:2630:88:3160:-235.552,0,-187.879	0/1:100:50,50:50:1788:50:1775:-129.739,0,-131.1	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:133:69,64:69:2422:64:2292:-166.504,0,-178.197	0/1:38:21,17:21:748:17:612:-43.9743,0,-56.2062	0/1:78:42,36:42:1451:36:1296:-93.4636,0,-107.398	0/1:89:46,43:46:1648:43:1544:-111.438,0,-121.817	1/1:70:0,69:0:0:69:2476:-222.734,-20.7711,0	0/1:66:28,38:28:988:38:1364:-103.193,0,-69.3659	1/1:79:0,79:0:0:79:2805:-252.667,-23.7814,0	1/1:149:1,148:1:21:148:5253:-470.802,-42.7535,0	0/1:112:51,61:51:1775:61:2165:-161.4,0,-126.312	1/1:164:0,164:0:0:164:5871:-528.5,-49.3689,0	0/1:45:25,20:25:880:20:716:-51.2214,0,-65.9714	0/1:8:5,3:5:172:3:108:-7.66693,0,-13.4097	0/1:104:51,53:51:1805:53:1908:-140.69,0,-131.423	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:15:0,15:0:0:15:517:-46.8546,-4.51545,0	1/1:107:0,107:0:0:107:3832:-345.077,-32.2102,0	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/1:51:22,29:22:780:29:1029:-77.5686,0,-55.1705	1/1:165:3,162:3:108:162:5797:-511.637,-39.5948,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:156:67,89:67:2302:89:3177:-239.192,0,-160.444	1/1:127:0,127:0:0:127:4548:-409.484,-38.2308,0	0/1:93:39,54:39:1362:54:1905:-143.728,0,-94.8785	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:113:60,53:60:2125:53:1896:-136.902,0,-157.501	1/1:90:1,89:1:36:89:3175:-282.372,-23.4944,0	1/1:42:1,41:1:21:41:1463:-129.865,-10.5433,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:136:0,136:0:0:136:4872:-438.632,-40.9401,0	1/1:24:0,23:0:0:23:828:-74.4843,-6.92369,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	1/1:107:0,106:0:0:106:3778:-339.858,-31.9092,0	1/1:70:0,70:0:0:70:2516:-226.689,-21.0721,0	1/1:134:0,134:0:0:134:4793:-431.521,-40.338,0	0/1:100:48,52:48:1671:52:1868:-138.296,0,-120.554	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:78:0,78:0:0:78:2784:-250.797,-23.4803,0	0/1:176:112,64:112:3931:64:2276:-152.068,0,-300.992	0/1:140:85,55:85:2944:55:1972:-135.598,0,-223.045	1/1:140:0,140:0:0:140:5024:-452.238,-42.1442,0	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	1/1:125:0,125:0:0:125:4463:-401.841,-37.6288,0	0/1:179:84,95:84:2966:95:3408:-253.05,0,-213.288	1/1:50:0,49:0:0:49:1754:-157.784,-14.7505,0	0/1:65:37,28:37:1320:28:1000:-70.7484,0,-99.535	0/1:86:41,45:41:1452:45:1616:-119.841,0,-105.087	0/1:98:33,65:33:1176:65:2300:-177.221,0,-76.6468	0/1:120:55,65:55:1952:65:2340:-174.735,0,-139.832	0/1:67:51,16:51:1797:16:570:-31.4637,0,-141.841	1/1:54:0,54:0:0:54:1944:-175.233,-16.2556,0	1/1:140:0,140:0:0:140:5032:-453.024,-42.1442,0
chr10	5223231	.	AA	AG	129659	PASS	AB=0.483556;ABP=12.1515;AC=143;AF=0.760638;AN=188;AO=6129;CIGAR=1M1X;DP=8164;DPB=8164;DPRA=0;EPP=13312;EPPR=4380.7;GTI=0;LEN=1;MEANALT=1.11702;MQM=59.9165;MQMR=59.9722;NS=94;NUMALT=1;ODDS=2.19025;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219365;QR=71577;RO=2016;RPL=6129;RPP=13312;RPPR=4380.7;RPR=0;RUN=1;SAF=0;SAP=13312;SAR=6129;SRF=0;SRP=4380.7;SRR=2016;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:21,13:21:743:13:464:-31.5029,0,-56.5985	1/1:114:0,114:0:0:114:4079:-367.287,-34.3174,0	1/1:78:0,78:0:0:78:2765:-249.056,-23.4803,0	0/1:101:68,33:68:2401:33:1184:-76.4643,0,-185.941	0/1:25:16,9:16:574:9:320:-21.6166,0,-44.4686	0/1:43:24,19:24:860:19:684:-48.946,0,-64.7778	0/1:83:39,44:39:1372:44:1565:-116.15,0,-98.7908	0/1:145:62,83:62:2187:83:2984:-225.14,0,-153.445	0/1:56:18,37:18:633:37:1320:-102.182,0,-40.3801	0/1:123:69,54:69:2448:54:1940:-137.847,0,-183.548	1/1:83:0,82:0:0:82:2923:-262.943,-24.6845,0	0/1:98:49,49:49:1732:49:1760:-129.18,0,-126.662	1/1:100:0,99:0:0:99:3552:-319.528,-29.802,0	1/1:113:0,113:0:0:113:4048:-364.507,-34.0164,0	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:205:0,205:0:0:205:7351:-661.62,-61.7112,0	1/1:94:1,93:1:36:93:3340:-297.21,-24.6985,0	0/1:60:22,38:22:777:38:1364:-104.999,0,-52.1894	0/1:120:62,58:62:2224:58:2071:-150.522,0,-164.301	0/1:117:62,55:62:2216:55:1980:-143.254,0,-164.485	1/1:63:0,63:0:0:63:2248:-202.584,-18.9649,0	1/1:23:0,23:0:0:23:820:-74.0663,-6.92369,0	1/1:85:2,83:2:62:83:2984:-262.898,-19.6988,0	0/1:50:28,22:28:993:22:784:-55.8324,0,-74.6316	1/1:209:0,209:0:0:209:7473:-672.465,-62.9153,0	0/1:168:86,82:86:3048:82:2944:-214.62,0,-223.969	0/1:47:23,24:23:828:24:860:-63.5734,0,-60.6957	1/1:182:0,182:0:0:182:6544:-589.02,-54.7875,0	0/1:123:67,56:67:2391:56:2000:-143.247,0,-178.42	1/1:88:0,88:0:0:88:3156:-284.265,-26.4906,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:7:6,1:6:205:1:36:-1.49107,0,-16.6764	1/1:248:0,248:0:0:248:8877:-798.912,-74.6554,0	0/1:169:82,87:82:2909:87:3096:-227.995,0,-211.17	0/1:103:55,47:55:1956:47:1680:-120.569,0,-145.397	0/1:10:7,3:7:250:3:108:-7.06487,0,-19.8364	0/1:132:69,63:69:2465:63:2244:-162.488,0,-182.368	0/1:39:22,17:22:782:17:612:-43.6733,0,-58.9628	0/1:80:44,36:44:1561:36:1292:-92.5014,0,-116.698	0/1:93:48,45:48:1724:45:1601:-116.236,0,-127.45	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:68:30,38:30:1057:38:1360:-102.231,0,-74.9694	1/1:81:0,81:0:0:81:2896:-260.782,-24.3834,0	1/1:146:1,145:1:36:145:5189:-463.526,-40.3521,0	0/1:115:55,60:55:1965:60:2133:-157.618,0,-142.506	1/1:165:0,165:0:0:165:5888:-530.033,-49.67,0	0/1:47:27,20:27:957:20:720:-50.9804,0,-72.2965	0/1:8:5,3:5:172:3:108:-7.66693,0,-13.4092	0/1:104:52,52:52:1864:52:1872:-137.452,0,-136.733	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:15:0,15:0:0:15:530:-48.0313,-4.51545,0	1/1:110:0,109:0:0:109:3884:-349.396,-32.8123,0	0/1:10:7,3:7:239:3:104:-6.69251,0,-18.8321	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:18:10,8:10:345:8:288:-20.8489,0,-25.9623	0/1:52:22,30:22:779:30:1076:-81.4993,0,-54.7782	1/1:165:4,160:4:135:160:5748:-504.575,-37.2413,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:160:72,88:72:2558:88:3140:-234.662,0,-182.287	1/1:124:0,122:0:0:122:4368:-392.986,-36.7257,0	0/1:97:42,55:42:1484:55:1952:-146.751,0,-104.653	1/1:40:0,40:0:0:40:1407:-126.926,-12.0412,0	0/1:115:61,54:61:2171:54:1936:-139.898,0,-161.038	1/1:91:1,90:1:36:90:3212:-285.702,-23.7955,0	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:136:0,136:0:0:136:4888:-440.069,-40.9401,0	1/1:25:0,25:0:0:25:885:-79.9665,-7.52575,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	1/1:80:0,80:0:0:80:2836:-255.053,-24.0824,0	1/1:108:0,99:0:0:99:3533:-317.82,-29.802,0	1/1:71:0,71:0:0:71:2544:-229.208,-21.3731,0	1/1:130:0,130:0:0:130:4656:-419.202,-39.1339,0	0/1:105:51,54:51:1800:54:1917:-141.197,0,-130.663	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:76:0,76:0:0:76:2720:-245.039,-22.8783,0	0/1:183:120,63:120:4268:63:2256:-148.161,0,-329.18	0/1:147:90,57:90:3205:57:2048:-140.327,0,-244.418	1/1:139:0,138:0:0:138:4949:-445.13,-41.5421,0	1/1:78:0,78:0:0:78:2808:-252.959,-23.4803,0	1/1:128:0,128:0:0:128:4588:-413.028,-38.5318,0	0/1:182:86,96:86:3057:96:3440:-255.025,0,-220.571	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	0/1:69:41,28:41:1455:28:1004:-69.9048,0,-110.474	0/1:88:43,45:43:1541:45:1620:-119.599,0,-112.492	0/1:98:33,65:33:1169:65:2328:-179.513,0,-76.0149	0/1:123:56,67:56:1957:67:2396:-178.87,0,-139.374	0/1:68:53,15:53:1878:15:532:-27.743,0,-148.827	1/1:54:0,54:0:0:54:1936:-174.514,-16.2556,0	1/1:143:0,143:0:0:143:5125:-461.391,-43.0473,0
chr10	5258614	.	A	G	35331.2	PASS	AB=0.53274;ABP=38.5569;AC=47;AF=0.25;AN=188;AO=2039;CIGAR=1X;DP=7791;DPB=7791;DPRA=1.03552;EPP=4361.43;EPPR=12439.1;GTI=0;LEN=1;MEANALT=1.01923;MQM=59.9892;MQMR=59.9941;NS=94;NUMALT=1;ODDS=2.78494;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72768;QR=204709;RO=5751;RPL=2031;RPP=4361.43;RPPR=12439.1;RPR=8;RUN=1;SAF=2037;SAP=4413.29;SAR=2;SRF=5751;SRP=12491.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:7,19:7:248:19:680:-53.7024,0,-14.8374	0/0:101:101,0:101:3589:0:0:0,-30.404,-323.217	0/0:104:104,0:104:3690:0:0:0,-31.3071,-332.302	0/1:237:118,118:118:4228:118:4232:-309.804,0,-309.445	0/1:15:5,10:5:180:10:352:-27.5027,0,-12.0366	0/1:22:6,16:6:201:16:572:-45.1908,0,-11.7944	0/1:42:18,24:18:648:24:864:-65.4393,0,-46.0086	0/1:116:56,60:56:1969:60:2133:-157.317,0,-142.564	0/1:56:21,35:21:752:35:1256:-96.4876,0,-51.1486	0/1:103:48,55:48:1712:55:1971:-146.658,0,-123.36	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.346	0/1:64:36,28:36:1276:28:1000:-71.0495,0,-95.8771	0/0:86:86,0:86:3042:0:0:0,-25.8886,-274.009	0/0:118:118,0:118:4213:0:0:0,-35.5215,-379.35	0/0:87:87,0:87:3113:0:0:0,-26.1896,-280.395	0/0:61:61,0:61:2158:0:0:0,-18.3628,-194.484	0/0:102:102,0:102:3612:0:0:0,-30.7051,-325.287	0/0:87:86,1:86:3080:1:36:0,-22.5913,-273.83	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	0/1:41:16,25:16:553:25:892:-68.2575,0,-37.7518	0/1:128:55,73:55:1953:73:2590:-194.816,0,-137.51	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:81:81,0:81:2846:0:0:0,-24.3834,-256.378	0/1:58:50,8:50:1776:8:288:-8.80767,0,-142.663	0/1:26:10,16:10:360:16:572:-43.9848,0,-24.9175	0/0:297:296,1:296:10522:1:36:0,-85.8076,-943.297	0/1:101:39,62:39:1400:62:2228:-170.38,0,-95.8952	0/1:49:25,24:25:892:24:864:-63.3321,0,-65.8492	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.904	0/1:194:93,101:93:3294:101:3587:-264.638,0,-238.278	0/0:180:180,0:180:6399:0:0:0,-54.1854,-575.999	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/1:19:11,8:11:392:8:284:-20.1838,0,-29.9005	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:9:9,0:9:312:0:0:0,-2.70927,-28.4154	0/1:18:4,14:4:144:14:504:-40.2796,0,-7.89508	0/0:236:236,0:236:8418:0:0:0,-71.0431,-757.624	0/1:140:69,71:69:2476:71:2525:-185.357,0,-180.949	0/1:85:37,48:37:1305:48:1712:-128.777,0,-92.1619	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:124:60,64:60:2107:64:2288:-168.854,0,-152.567	0/1:50:16,34:16:568:34:1219:-94.9651,0,-36.4004	0/1:51:12,39:12:398:39:1358:-107.16,0,-20.7843	0/1:68:38,30:38:1360:30:1070:-76.142,0,-102.231	0/0:89:89,0:89:3147:0:0:0,-26.7917,-283.453	0/1:53:20,33:20:701:33:1184:-90.8853,0,-47.4571	0/0:50:49,1:49:1737:1:36:0,-11.4532,-153.014	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.584	0/1:42:20,22:20:720:22:779:-57.7888,0,-52.4855	0/1:199:108,91:108:3853:91:3272:-234.794,0,-287.06	0/1:71:32,39:32:1148:39:1361:-101.413,0,-82.2567	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:103:37,66:37:1328:66:2338:-179.67,0,-88.8161	0/0:17:17,0:17:578:0:0:0,-5.11751,-52.3374	0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4168	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:56:23,33:23:820:33:1180:-89.6504,0,-57.2648	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/1:25:11,14:11:392:14:504:-38.1723,0,-28.0943	0/1:76:33,43:33:1165:43:1542:-116.195,0,-82.2767	0/0:166:166,0:166:5952:0:0:0,-49.971,-535.786	0/1:17:10,7:10:356:7:239:-16.7252,0,-27.2637	0/1:139:56,83:56:1978:83:2967:-225.419,0,-136.448	0/0:130:130,0:130:4656:0:0:0,-39.1339,-419.202	0/1:62:35,27:35:1241:27:968:-68.7735,0,-93.3286	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:158:81,77:81:2874:77:2739:-199.189,0,-211.332	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:36:35,1:35:1248:1:36:0,-7.2388,-109.027	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/0:145:145,0:145:5193:0:0:0,-43.6493,-467.507	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:73:73,0:73:2605:0:0:0,-21.9752,-234.697	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.135	0/0:156:156,0:156:5555:0:0:0,-46.9607,-499.702	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.013	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:163:81,82:81:2848:82:2944:-216.126,0,-207.486	0/0:21:21,0:21:729:0:0:0,-6.32163,-65.9287	0/0:89:88,1:88:3153:1:36:0,-23.1934,-280.395	0/1:49:16,33:16:576:33:1184:-92.1178,0,-37.4245	0/1:117:53,64:53:1904:64:2283:-170.511,0,-136.417	0/0:120:120,0:120:4292:0:0:0,-36.1236,-386.458	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/0:120:120,0:120:4240:0:0:0,-36.1236,-381.778	0/1:184:92,92:92:3257:92:3281:-240.119,0,-237.962	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:88:45,43:45:1612:43:1540:-112.402,0,-118.879	0/1:69:36,33:36:1292:33:1180:-85.737,0,-95.8127	0/1:70:33,37:33:1172:37:1323:-98.2992,0,-84.7154	0/1:138:72,66:72:2559:66:2331:-168.506,0,-189.018	0/1:56:15,41:15:517:41:1472:-115.918,0,-29.9969	0/0:79:79,0:79:2798:0:0:0,-23.7814,-252.058	0/0:128:128,0:128:4581:0:0:0,-38.5318,-412.453
chr10	5259691	.	T	C	15110.9	PASS	AB=0.250526;ABP=4111.45;AC=45;AF=0.239362;AN=188;AO=1938;CIGAR=1X;DP=18506;DPB=18506;DPRA=1.08094;EPP=4211.32;EPPR=35919.2;GTI=15;LEN=1;MEANALT=1.06061;MQM=40.3431;MQMR=59.9356;NS=94;NUMALT=1;ODDS=2.66676;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68674;QR=592445;RO=16564;RPL=24;RPP=4005.44;RPPR=595.547;RPR=1914;RUN=1;SAF=24;SAP=4005.44;SAR=1914;SRF=9349;SRP=600.015;SRR=7215;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:63,12:63:2264:12:419:-13.1223,0,-181.414	0/0:366:366,0:366:13089:0:0:0,-110.177,-1177.8	0/0:481:481,0:481:17229:0:0:0,-144.795,-1550.04	0/1:333:237,96:237:8470:96:3403:-194.131,0,-660.849	0/1:112:93,19:93:3312:19:680:-24.2889,0,-264.582	0/1:46:31,15:31:1108:15:536:-31.6637,0,-86.1754	0/1:225:143,82:143:5132:82:2897:-184.01,0,-394.289	0/1:263:197,65:197:7046:65:2285:-113.123,0,-554.779	0/1:69:45,24:45:1612:24:851:-50.6543,0,-124.599	0/1:171:140,31:140:4991:31:1104:-45.6033,0,-397.864	0/0:181:180,1:180:6436:1:36:0,-50.8882,-575.634	0/1:116:90,26:90:3232:26:914:-43.3192,0,-256.18	0/0:192:192,0:192:6824:0:0:0,-57.7978,-614.218	0/0:215:214,1:214:7637:1:32:0,-61.5221,-684.166	0/0:200:200,0:200:7150:0:0:0,-60.206,-643.551	0/0:142:142,0:142:5058:0:0:0,-42.7463,-454.503	0/0:225:225,0:225:8023:0:0:0,-67.7317,-722.075	0/0:187:186,1:186:6667:1:36:0,-52.6943,-596.499	0/1:84:65,19:65:2317:19:676:-32.2126,0,-183.502	0/1:357:274,83:274:9819:83:2980:-151.581,0,-776.184	0/1:218:155,63:155:5504:63:2235:-127.625,0,-429.865	0/0:148:148,0:148:5282:0:0:0,-44.5524,-475.484	0/0:112:112,0:112:4007:0:0:0,-33.7154,-360.814	0/0:205:202,3:202:7227:3:108:0,-52.0386,-640.807	0/1:126:97,29:97:3463:29:1032:-50.4365,0,-273.952	0/0:575:571,3:571:20402:3:104:0,-163.333,-1825.51	0/1:296:237,59:237:8499:59:2099:-91.556,0,-675.798	0/1:65:53,12:53:1904:12:428:-16.5407,0,-152.071	0/0:612:610,1:610:21846:1:36:0,-180.691,-1961.98	0/1:181:125,56:125:4462:56:1978:-116.95,0,-347.018	0/0:226:225,1:225:8029:1:36:0,-64.5301,-719.126	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:15:11,4:11:392:4:144:-8.26617,0,-31.1046	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:30:28,2:28:1008:2:72:0,-2.59446,-84.5999	0/0:447:443,4:443:15876:4:144:0,-121.247,-1415.05	0/1:284:183,101:183:6559:101:3602:-224.039,0,-504.898	0/1:136:115,21:115:4072:21:725:-21.0133,0,-325.728	0/1:3:1,2:1:36:2:72:-5.66044,0,-2.69518	0/1:359:307,52:307:10995:52:1835:-49.1845,0,-881.374	0/1:70:50,20:50:1787:20:703:-40.1046,0,-140.04	0/1:245:186,59:186:6667:59:2106:-106.757,0,-526.119	0/1:115:84,31:84:3004:31:1104:-61.5509,0,-235.973	0/0:172:172,0:172:6124:0:0:0,-51.7772,-551.262	0/1:143:118,25:118:4215:25:896:-35.5061,0,-336.484	0/0:357:357,0:357:12766:0:0:0,-107.468,-1148.75	0/0:385:383,1:383:13720:1:36:0,-112.388,-1230.29	0/1:182:131,51:131:4687:51:1780:-99.5803,0,-367.2	0/1:232:190,42:190:6824:42:1500:-61.1697,0,-544.389	0/1:258:171,87:171:6119:87:3099:-193.584,0,-472.655	0/1:30:22,8:22:792:8:288:-15.9474,0,-62.5748	0/1:313:248,65:248:8869:65:2298:-101.323,0,-703.953	0/0:90:88,2:88:3164:2:72:0,-20.315,-278.206	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:413:413,0:413:14747:0:0:0,-124.325,-1326.97	0/1:63:47,16:47:1671:16:549:-29.5549,0,-131.712	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:35:29,6:29:1044:6:216:-8.59317,0,-83.7388	0/1:146:116,30:116:4160:30:1061:-48.1917,0,-330.574	0/0:265:265,0:265:9462:0:0:0,-79.7729,-851.536	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2882	0/1:260:180,80:180:6447:80:2859:-172.515,0,-502.047	0/0:480:479,1:479:17140:1:36:0,-140.992,-1538.73	0/1:152:102,50:102:3639:50:1760:-106.431,0,-281.959	0/0:263:263,0:263:9439:0:0:0,-79.1709,-849.453	0/1:187:122,65:122:4358:65:2304:-144.966,0,-336.101	0/0:235:231,4:231:8259:4:144:0,-57.8083,-730.387	0/0:104:104,0:104:3744:0:0:0,-31.3071,-337.158	0/0:171:170,1:170:6096:1:36:0,-47.8779,-545.142	0/0:265:265,0:265:9489:0:0:0,-79.7729,-853.965	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:150:150,0:150:5372:0:0:0,-45.1545,-483.607	0/0:174:173,1:173:6188:1:36:0,-48.7809,-552.79	0/0:269:268,1:268:9573:1:36:0,-77.3788,-856.737	0/0:390:390,0:390:13957:0:0:0,-117.402,-1255.49	0/0:278:276,2:276:9866:2:72:0,-76.8496,-880.774	0/1:236:198,38:198:7111:38:1352:-41.5126,0,-569.002	0/0:62:62,0:62:2210:0:0:0,-18.6639,-199.164	0/0:362:361,1:361:12919:1:36:0,-105.375,-1158.69	0/1:265:183,82:183:6550:82:2933:-167.886,0,-509.806	0/1:372:276,96:276:9865:96:3407:-184.634,0,-775.714	0/0:210:210,0:210:7509:0:0:0,-63.2163,-675.285	0/0:221:221,0:221:7893:0:0:0,-66.5276,-710.388	0/0:230:229,1:229:8172:1:36:0,-65.6386,-731.884	0/1:201:149,52:149:5313:52:1820:-98.2433,0,-417.741	0/0:82:81,1:81:2887:1:36:0,-21.0862,-256.46	0/1:121:91,30:91:3252:30:1028:-51.1996,0,-256.449	0/1:95:77,18:77:2747:18:640:-26.1041,0,-218.873	0/1:126:105,21:105:3748:21:735:-26.0489,0,-299.581	0/1:144:108,36:108:3871:36:1242:-62.4762,0,-305.218	0/1:75:50,25:50:1796:25:883:-55.1803,0,-139.345	0/0:254:254,0:254:9077:0:0:0,-76.4616,-816.906	0/0:256:255,1:255:9125:1:36:0,-73.4654,-817.624
chr10	5276484	.	G	A	242671	PASS	AB=0.498799;ABP=3.0833;AC=141;AF=0.75;AN=188;AO=8965;CIGAR=1X;DP=11910;DPB=11910;DPRA=0;EPP=19426.9;EPPR=6382.8;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9279;MQMR=59.9844;NS=94;NUMALT=1;ODDS=2.92768;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=320513;QR=104863;RO=2942;RPL=4798;RPP=99.4515;RPPR=56.8173;RPR=4167;RUN=1;SAF=4793;SAP=96.419;SAR=4172;SRF=1605;SRP=56.0232;SRR=1337;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:35,31:35:1247:31:1097:-79.1696,0,-92.6661	1/1:124:0,124:0:0:124:4421:-398.062,-37.3277,0	1/1:249:1,248:1:36:248:8853:-792.996,-71.3582,0	0/1:225:107,118:107:3844:118:4240:-314.045,0,-278.423	0/1:94:47,47:47:1692:47:1688:-123.91,0,-124.27	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6107	0/1:117:55,62:55:1957:62:2224:-165.204,0,-141.183	0/1:196:111,85:111:3924:85:3060:-216.624,0,-294.347	0/1:155:62,92:62:2185:92:3292:-249.781,0,-150.194	0/1:106:58,48:58:2050:48:1717:-122.904,0,-152.859	1/1:119:0,119:0:0:119:4264:-383.936,-35.8226,0	0/1:198:96,102:96:3401:102:3660:-269.954,0,-246.699	1/1:180:0,180:0:0:180:6435:-579.237,-54.1854,0	1/1:135:0,135:0:0:135:4827:-434.454,-40.6391,0	1/1:143:0,143:0:0:143:5128:-461.154,-43.0473,0	1/1:139:0,139:0:0:139:4965:-446.984,-41.8432,0	1/1:133:0,133:0:0:133:4751:-427.74,-40.037,0	1/1:94:0,94:0:0:94:3350:-301.715,-28.2968,0	0/1:75:45,30:45:1576:30:1076:-74.5756,0,-119.55	0/1:274:144,130:144:5164:130:4633:-334.647,0,-382.413	0/1:141:71,70:71:2548:70:2512:-183.887,0,-187.125	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	1/1:105:0,105:0:0:105:3768:-339.305,-31.6082,0	1/1:111:9,102:9:324:102:3647:-298.929,-3.90848,0	0/1:101:56,45:56:2008:45:1612:-114.961,0,-150.589	1/1:289:1,288:1:36:288:10320:-925.115,-83.3994,0	0/1:318:159,159:159:5642:159:5696:-417.009,0,-412.172	0/1:74:41,33:41:1467:33:1188:-84.9524,0,-110.049	1/1:331:0,331:0:0:331:11876:-1068.69,-99.6409,0	0/1:64:41,23:41:1476:23:828:-55.5497,0,-113.87	1/1:108:0,108:0:0:108:3827:-344.628,-32.5112,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:11:1,10:1:36:10:360:-29.2035,0,-0.286945	1/1:367:1,365:1:27:365:12997:-1166.8,-107.792,0	0/1:87:39,48:39:1400:48:1728:-129.616,0,-100.11	0/1:115:65,50:65:2336:50:1788:-126.584,0,-175.881	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:168:82,86:82:2937:86:3071:-225.938,0,-213.989	0/1:64:25,39:25:896:39:1396:-106.673,0,-61.6944	0/1:185:90,95:90:3219:95:3416:-251.94,0,-234.241	0/1:145:73,72:73:2601:72:2573:-188.165,0,-190.688	1/1:115:1,114:1:36:114:4011:-356.868,-31.0202,0	0/1:96:48,48:48:1728:48:1712:-125.464,0,-126.898	1/1:115:1,114:1:36:114:4081:-363.876,-31.0202,0	1/1:199:0,199:0:0:199:7114:-640.283,-59.905,0	0/1:106:53,53:53:1896:53:1900:-139.369,0,-139.009	0/1:133:65,68:65:2328:68:2424:-178.379,0,-169.743	0/1:148:67,81:67:2396:81:2903:-216.952,0,-171.345	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:154:83,71:83:2963:71:2537:-182.216,0,-220.544	1/1:38:0,38:0:0:38:1360:-122.697,-11.4391,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:202:0,202:0:0:202:7222:-650.033,-60.8081,0	0/1:54:18,36:18:639:36:1288:-99.968,0,-41.5826	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.439	0/1:62:34,28:34:1216:28:985:-70.2977,0,-91.0827	1/1:181:0,181:0:0:181:6500:-585.068,-54.4864,0	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/1:135:61,74:61:2169:74:2626:-195.932,0,-154.828	1/1:142:0,142:0:0:142:5067:-456.105,-42.7463,0	0/1:82:30,52:30:1076:52:1857:-142.723,0,-72.4684	1/1:91:1,90:1:36:90:3228:-287.143,-23.7955,0	0/1:187:91,96:91:3230:96:3424:-252.074,0,-234.628	1/1:138:3,135:3:108:135:4827:-424.507,-31.467,0	1/1:86:1,85:1:32:85:3032:-269.899,-22.6893,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	1/1:160:0,160:0:0:160:5717:-514.647,-48.1648,0	0/1:25:3,22:3:108:22:773:-62.3637,0,-2.54942	1/1:91:0,91:0:0:91:3253:-292.972,-27.3937,0	1/1:88:0,88:0:0:88:3137:-282.555,-26.4906,0	1/1:138:0,138:0:0:138:4952:-445.828,-41.5421,0	1/1:212:0,212:0:0:212:7589:-683.042,-63.8184,0	1/1:145:0,145:0:0:145:5173:-465.697,-43.6494,0	0/1:129:67,62:67:2395:62:2220:-161.228,0,-176.974	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:201:1,200:1:36:200:7148:-639.775,-56.9088,0	0/1:165:81,84:81:2850:84:3005:-220.997,0,-207.065	0/1:252:123,128:123:4404:128:4586:-336.496,0,-320.614	1/1:151:1,150:1:36:150:5343:-477.404,-41.8573,0	1/1:144:0,144:0:0:144:5118:-460.757,-43.3483,0	1/1:170:0,170:0:0:170:6051:-544.696,-51.1751,0	0/1:293:147,146:147:5216:146:5224:-382.064,0,-381.367	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:139:70,69:70:2497:69:2462:-179.992,0,-183.138	0/1:170:75,95:75:2668:95:3385:-253.689,0,-189.186	0/1:114:62,52:62:2191:52:1855:-132.911,0,-163.138	0/1:148:75,73:75:2668:73:2616:-191.135,0,-195.814	0/1:156:111,45:111:3936:45:1616:-98.7693,0,-307.47	1/1:111:0,111:0:0:111:3980:-358.39,-33.4143,0	1/1:260:1,259:1:36:259:9267:-830.379,-74.6695,0
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chr10	5294945	.	G	A	49417.3	PASS	AB=0.536783;ABP=65.4707;AC=49;AF=0.260638;AN=188;AO=2859;CIGAR=1X;DP=9466;DPB=9466;DPRA=1.32498;EPP=6211.25;EPPR=14343.4;GTI=7;LEN=1;MEANALT=1.05769;MQM=59.8706;MQMR=59.9967;NS=94;NUMALT=1;ODDS=0.714634;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102346;QR=236096;RO=6604;RPL=0;RPP=6211.25;RPPR=14343.4;RPR=2859;RUN=1;SAF=2859;SAP=6211.25;SAR=0;SRF=6604;SRP=14343.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:34,20:34:1216:20:716:-48.5117,0,-93.4909	0/0:116:115,1:115:4112:1:36:0,-31.3212,-366.667	0/0:206:206,0:206:7364:0:0:0,-62.0122,-662.81	0/1:322:153,169:153:5477:169:6045:-447.221,0,-396.124	0/1:88:50,38:50:1796:38:1360:-96.2054,0,-135.432	0/1:58:29,29:29:1044:29:1044:-76.8151,0,-76.8151	0/1:151:53,98:53:1889:98:3516:-271.194,0,-124.831	0/1:150:76,73:76:2728:73:2616:-189.018,0,-200.549	0/1:99:40,59:40:1440:59:2116:-160.903,0,-100.096	0/1:99:50,49:50:1781:49:1755:-128.16,0,-130.769	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:60:23,37:23:828:37:1320:-101.038,0,-56.7823	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/1:244:111,132:111:3980:132:4718:-351.266,0,-284.88	0/1:69:35,34:35:1260:34:1205:-87.852,0,-92.9344	0/0:120:120,0:120:4301:0:0:0,-36.1236,-387.264	0/0:108:108,0:108:3846:0:0:0,-32.5112,-346.334	0/1:105:92,13:92:3281:13:464:-10.3579,0,-263.901	0/1:143:67,76:67:2389:76:2724:-202.304,0,-172.218	0/0:396:396,0:396:14083:0:0:0,-119.208,-1267.24	0/1:258:126,132:126:4504:132:4733:-348.099,0,-327.863	0/1:24:7,17:7:252:17:612:-48.1887,0,-15.8042	0/0:379:379,0:379:13582:0:0:0,-114.09,-1222.16	0/1:140:67,73:67:2400:73:2628:-194.622,0,-174.113	0/0:135:133,2:133:4708:2:68:0,-34.1813,-417.291	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:145:144,1:144:5168:1:34:0,-40.2504,-461.86	0/1:254:101,153:101:3620:153:5474:-416.308,0,-249.544	0/1:26:12,14:12:417:14:504:-37.8695,0,-30.0334	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:267:117,150:117:4176:150:5383:-404.048,0,-295.649	0/1:19:4,15:4:144:15:540:-43.217,0,-7.59405	0/1:169:63,106:63:2218:106:3793:-290.692,0,-149.008	0/1:29:13,16:13:468:16:572:-43.0834,0,-33.7298	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:179:83,96:83:2961:96:3405:-252.778,0,-212.838	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:169:168,1:168:5979:1:36:0,-47.2758,-534.617	0/1:174:94,80:94:3357:80:2868:-205.978,0,-249.966	0/1:139:77,62:77:2745:62:2220:-158.221,0,-205.448	0/1:223:91,132:91:3256:132:4748:-360.34,0,-226.131	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:172:71,101:71:2548:101:3608:-273.146,0,-177.793	0/0:66:66,0:66:2341:0:0:0,-19.868,-210.948	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:158:158,0:158:5646:0:0:0,-47.5627,-508.258	0/1:83:30,53:30:1072:53:1882:-144.67,0,-71.807	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:56:19,37:19:680:37:1324:-102.604,0,-44.6715	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:337:145,192:145:5212:192:6885:-518.267,0,-367.769	0/0:166:166,0:166:5964:0:0:0,-49.971,-536.864	0/1:22:10,12:10:345:12:413:-30.8752,0,-24.7582	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.776	0/1:178:101,77:101:3620:77:2752:-194.339,0,-272.422	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:43:43,0:43:1510:0:0:0,-12.9443,-136.189	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.835	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:110:110,0:110:3921:0:0:0,-33.1133,-353.083	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/0:166:166,0:166:5888:0:0:0,-49.971,-530.029	0/0:163:163,0:163:5856:0:0:0,-49.0679,-527.149	0/0:182:182,0:182:6516:0:0:0,-54.7875,-586.524	0/1:92:30,62:30:1080:62:2220:-172.356,0,-69.8185	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:144:144,0:144:5149:0:0:0,-43.3483,-463.55	0/1:151:88,63:88:3144:63:2245:-155.995,0,-237.731	0/1:317:136,180:136:4830:180:6448:-484.921,0,-339.37	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:98:45,53:45:1620:53:1896:-141.417,0,-116.589	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:41:17,24:17:608:24:864:-65.7394,0,-42.7098	0/1:60:21,39:21:756:39:1396:-107.875,0,-50.3054	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/1:50:30,20:30:1076:20:720:-50.0773,0,-82.1014	0/1:44:10,34:10:360:34:1220:-96.8615,0,-19.499	0/0:186:186,0:186:6661:0:0:0,-55.9916,-599.564	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374
chr10	5295104	.	A	G	40992.4	PASS	AB=0.488764;ABP=8.67077;AC=41;AF=0.218085;AN=188;AO=2606;CIGAR=1X;DP=16761;DPB=16761;DPRA=0.940207;EPP=5661.87;EPPR=30731.5;GTI=2;LEN=1;MEANALT=1.07143;MQM=59.9777;MQMR=59.9927;NS=94;NUMALT=1;ODDS=3.11555;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92660;QR=506131;RO=14151;RPL=0;RPP=5661.87;RPPR=30731.5;RPR=2606;RUN=1;SAF=0;SAP=5661.87;SAR=2606;SRF=0;SRP=30731.5;SRR=14151;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:17,15:17:612:15:540:-39.299,0,-45.7805	0/0:164:164,0:164:5867:0:0:0,-49.3689,-528.141	0/0:132:132,0:132:4710:0:0:0,-39.736,-424.06	0/1:171:85,86:85:3036:86:3024:-220.911,0,-221.995	0/1:72:45,27:45:1597:27:959:-64.9512,0,-122.344	0/1:70:34,36:34:1212:36:1288:-95.1515,0,-88.3142	0/1:138:73,65:73:2602:65:2332:-168.597,0,-192.885	0/1:205:104,101:104:3723:101:3574:-260.156,0,-273.559	0/1:125:49,76:49:1743:76:2697:-205.342,0,-119.525	0/1:107:43,64:43:1536:64:2270:-172.336,0,-106.311	0/0:138:138,0:138:4912:0:0:0,-41.5421,-442.23	0/1:66:27,39:27:972:39:1400:-106.431,0,-67.9299	0/0:41:41,0:41:1443:0:0:0,-12.3422,-130.165	0/0:48:48,0:48:1699:0:0:0,-14.4494,-153.195	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:114:78,36:78:2792:36:1249:-78.3889,0,-217.203	0/1:200:92,107:92:3293:107:3816:-283.372,0,-236.323	0/1:165:72,93:72:2563:93:3290:-246.649,0,-181.25	0/0:152:152,0:152:5436:0:0:0,-45.7566,-489.37	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:112:110,1:110:3931:1:36:0,-30.1759,-350.384	0/1:89:55,34:55:1972:34:1224:-83.6754,0,-150.963	0/0:388:388,0:388:13860:0:0:0,-116.8,-1247.18	0/1:226:99,127:99:3552:127:4507:-337.764,0,-251.855	0/1:16:5,11:5:180:11:387:-30.3495,0,-11.7356	0/0:262:262,0:262:9376:0:0:0,-78.8699,-843.801	0/1:202:110,92:110:3933:92:3281:-234.701,0,-293.353	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18	0/0:732:732,0:732:26250:0:0:0,-220.354,-2361.74	0/0:484:467,17:467:16727:17:578:0,-93.3611,-1452.74	0/0:573:573,0:573:20523:0:0:0,-172.49,-1846.56	0/0:785:785,0:785:28067:0:0:0,-236.309,-2525.21	0/0:713:697,16:697:24824:16:568:0,-163.183,-2182.03	0/0:125:125,0:125:4460:0:0:0,-37.6287,-401.569	0/1:301:132,168:132:4723:168:5978:-447.458,0,-334.56	0/1:154:124,30:124:4398:30:1080:-51.1546,0,-349.635	0/0:517:515,2:515:18428:2:59:0,-150.028,-1652.01	0/1:172:94,78:94:3355:78:2780:-198.662,0,-250.39	0/1:71:57,14:57:2040:14:504:-24.325,0,-162.499	0/1:201:103,98:103:3663:98:3471:-252.093,0,-269.366	0/1:27:11,16:11:396:16:576:-44.0472,0,-27.8549	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:117:64,53:64:2292:53:1895:-135.607,0,-170.951	0/0:126:126,0:126:4493:0:0:0,-37.9298,-404.539	0/0:235:235,0:235:8404:0:0:0,-70.742,-756.363	0/1:159:104,55:104:3724:55:1965:-129.259,0,-287.497	0/1:95:51,44:51:1828:44:1571:-113.083,0,-136.203	0/1:222:111,111:111:3961:111:3949:-288.766,0,-289.852	0/0:576:569,6:569:20359:6:212:0,-154.026,-1812.38	0/1:278:93,185:93:3340:185:6516:-502.841,0,-217.13	0/0:96:96,0:96:3439:0:0:0,-28.8989,-309.722	0/0:546:546,0:546:19569:0:0:0,-164.362,-1760.74	0/0:117:116,1:116:4155:1:36:0,-31.6222,-370.534	0/1:37:17,20:17:604:20:708:-52.9075,0,-43.5525	0/0:591:591,0:591:21194:0:0:0,-177.909,-1906.92	0/0:619:600,19:600:21467:19:684:0,-124.447,-1869.59	0/1:105:58,47:58:2060:47:1670:-118.977,0,-154.061	0/0:90:90,0:90:3213:0:0:0,-27.0927,-289.391	0/0:256:246,10:246:8848:10:360:0,-44.3194,-763.555	0/1:128:38,90:38:1360:90:3178:-247.712,0,-84.1688	0/0:251:250,1:250:8959:1:36:0,-71.9603,-802.682	0/1:72:32,40:32:1144:40:1425:-106.871,0,-81.5954	0/0:59:57,2:57:2044:2:72:0,-10.924,-177.395	0/1:158:95,63:95:3400:63:2252:-155.38,0,-258.652	0/0:230:228,2:228:8162:2:72:0,-62.4002,-727.756	0/0:93:91,2:91:3251:2:72:0,-21.1591,-285.974	0/0:138:138,0:138:4951:0:0:0,-41.5421,-445.738	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:323:322,1:322:11513:1:36:0,-93.6344,-1032.44	0/0:174:174,0:174:6212:0:0:0,-52.3792,-559.176	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:192:192,0:192:6863:0:0:0,-57.7978,-617.737	0/0:119:119,0:119:4231:0:0:0,-35.8226,-380.97	0/0:133:132,1:132:4707:1:36:0,-36.4387,-420.19	0/1:110:37,73:37:1324:73:2604:-201.493,0,-86.3488	0/0:379:379,0:379:13568:0:0:0,-114.09,-1220.9	0/0:90:88,2:88:3142:2:72:0,-20.256,-276.168	0/1:105:54,51:54:1932:51:1828:-133.19,0,-142.548	0/1:218:107,111:107:3840:111:3976:-292.406,0,-280.171	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/0:48:48,0:48:1691:0:0:0,-14.4494,-152.476	0/1:61:27,34:27:960:34:1216:-91.3837,0,-68.3534	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:54:26,28:26:936:28:1008:-74.7807,0,-68.3038	0/1:41:15,26:15:527:26:928:-71.496,0,-35.418	0/1:147:127,20:127:4548:20:708:-19.7942,0,-365.235	0/1:85:46,39:46:1656:39:1391:-99.9013,0,-123.741	0/1:46:26,20:26:928:20:716:-50.9203,0,-69.9909	0/0:97:97,0:97:3463:0:0:0,-29.1999,-311.88	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.895
chr10	5366835	.	GTTTTGGGG	GTTTGGGG,GGTTTGGGG	297001	PASS	AB=0.616292,0.373915;ABP=1058.56,1243.83;AC=117,71;AF=0.62234,0.37766;AN=188;AO=9511,3625;CIGAR=1M1D7M,1M1X7M;DP=13266;DPB=12217.7;DPRA=0,7.05917;EPP=20655.9,7874.6;EPPR=9.52472;GTI=10;LEN=1,1;MEANALT=3.12766,3.22222;MQM=59.9982,59.981;MQMR=60;NS=94;NUMALT=2;ODDS=11358.8;PAIRED=0,0;PAIREDR=0;PAO=58.6667,67.6667;PQA=2014,2322;PQR=2014;PRO=58.6667;QA=331116,128456;QR=78;RO=3;RPL=8028,0;RPP=9783.2,7874.6;RPPR=9.52472;RPR=1483,3625;RUN=1,1;SAF=8028,0;SAP=9783.2,7874.6;SAR=1483,3625;SRF=0;SRP=9.52472;SRR=3;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:73:0,36,36:0:0:36,36:1254,1280:-206.174,-104.203,-93.3662,-101.861,0,-91.0242	1/2:168:0,113,55:0:0:113,55:3964,1952:-481.876,-159.293,-125.276,-322.833,0,-306.276	1/2:166:0,89,77:0:0:89,77:3173,2751:-482.515,-223.873,-197.081,-258.221,0,-235.042	1/1:266:0,247,19:0:0:247,19:8621,667:-775.56,-74.3544,0,-721.276,-19.7194,-715.556	1/2:97:0,61,35:0:0:61,35:2119,1204:-269.973,-97.7103,-79.3475,-172.197,0,-161.661	1/2:44:0,30,13:0:0:30,13:1049,468:-123.414,-38.0884,-29.0575,-85.2256,0,-81.3122	1/1:140:0,134,6:0:0:134,6:4638,212:-417.24,-40.338,0,-399.974,-22.7194,-398.168	1/2:211:1,117,90:1:27:117,90:4084,3185:-589.214,-257.336,-224.243,-330.085,0,-305.12	1/2:183:0,88,92:0:0:88,92:3094,3239:-515.5,-263.655,-237.164,-251.816,0,-224.122	1/1:153:0,144,8:0:0:144,8:5060,279:-455.196,-43.3483,0,-432.505,-20.7145,-430.097	1/1:121:0,112,9:0:0:112,9:3900,324:-350.829,-33.7154,0,-324.392,-7.01262,-321.683	1/2:163:0,78,84:0:0:78,84:2739,2988:-466.266,-243.348,-219.868,-222.756,0,-197.469	1/2:164:0,72,92:0:0:72,92:2506,3264:-469.685,-265.92,-244.246,-203.753,0,-176.058	1/2:180:0,127,51:0:0:127,51:4409,1799:-504.807,-146.403,-108.172,-358.319,0,-342.967	1/2:107:0,92,14:0:0:92,14:3147,504:-296.557,-41.1491,-13.4543,-255.431,0,-251.216	1/2:159:0,69,88:0:0:69,88:2356,3101:-443.612,-252.434,-231.663,-191.134,0,-164.643	1/2:128:0,92,35:0:0:92,35:3213,1239:-362.215,-100.867,-73.1718,-261.29,0,-250.754	1/2:142:0,103,38:0:0:103,38:3600,1313:-399.404,-106.55,-75.5441,-292.726,0,-281.287	1/2:79:0,40,38:0:0:40,38:1382,1356:-222.732,-110.452,-98.4111,-112.205,0,-100.766	1/1:257:0,239,14:0:0:239,14:8318,474:-748.307,-71.9462,0,-709.88,-33.5317,-705.666	1/2:158:0,76,78:0:0:76,78:2693,2764:-444.552,-225.17,-202.292,-219.386,0,-195.906	1/1:112:0,104,7:0:0:104,7:3578,239:-321.87,-31.3071,0,-302.476,-12.0678,-300.369	1/2:153:0,128,21:0:0:128,21:4441,752:-422.294,-61.314,-22.7822,-360.966,0,-354.644	1/2:121:0,89,28:0:0:89,28:3140,982:-335.584,-79.9013,-53.1097,-255.672,0,-247.244	1/2:130:0,64,66:0:0:64,66:2234,2345:-373.091,-191.388,-172.122,-182.004,0,-162.136	1/1:371:0,356,10:0:0:356,10:12449,360:-1119.94,-107.167,0,-1090.56,-77.7472,-1087.55	1/2:304:0,131,173:0:0:131,173:4566,6138:-871.323,-499.999,-460.564,-371.231,0,-319.152	1/2:64:0,38,26:0:0:38,26:1339,923:-184.524,-75.5092,-64.0701,-109.319,0,-101.492	1/1:262:0,249,7:0:0:249,7:8664,252:-779.425,-74.9565,0,-758.862,-54.3901,-756.755	1/2:239:0,150,85:0:0:150,85:5281,3014:-675.462,-245.541,-200.387,-429.912,0,-404.324	1/2:126:0,109,16:0:0:109,16:3786,572:-354.35,-46.5754,-13.7631,-307.709,0,-302.892	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	2/2:22:0,1,21:0:0:1,21:36,744:-66.9248,-63.9871,-63.6861,-6.32163,-3.02439,0	1/2:12:0,2,10:0:0:2,10:72,356:-35.1981,-29.3234,-28.7214,-6.20827,0,-3.19797	1/2:10:0,3,7:0:0:3,7:108,252:-29.734,-20.9217,-20.0187,-9.17208,0,-7.06487	1/2:24:0,8,16:0:0:8,16:284,572:-69.9846,-46.8484,-44.4402,-23.3565,0,-18.54	1/1:363:0,339,17:0:0:339,17:11629,599:-1046.18,-102.049,0,-997.413,-53.2807,-992.295	1/2:151:0,87,60:0:0:87,60:3067,2115:-421.927,-172.207,-146.017,-249.725,0,-231.663	1/2:125:0,74,49:0:0:74,49:2569,1710:-347.9,-139.065,-116.789,-208.817,0,-194.067	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:221:0,117,103:0:0:117,103:4089,3665:-631.313,-298.688,-263.467,-332.618,0,-301.612	1/2:85:0,30,55:0:0:30,55:1033,1959:-243.925,-160.028,-150.997,-84.2455,0,-67.6888	1/2:219:0,102,115:0:0:102,115:3584,4064:-622.489,-330.779,-300.074,-291.6,0,-256.981	1/1:145:0,138,7:0:0:138,7:4770,252:-429.109,-41.5421,0,-408.546,-20.6204,-406.439	1/2:108:0,90,17:0:0:90,17:3080,599:-298.791,-48.7989,-21.7062,-250.021,0,-244.904	1/1:125:0,113,8:0:0:113,8:3893,288:-350.211,-34.0164,0,-326.711,-10.5225,-324.303	1/2:154:0,54,99:0:0:54,99:1915,3495:-440.47,-284.454,-268.199,-155.87,0,-126.068	1/1:220:0,200,19:0:0:200,19:6879,680:-618.839,-60.206,0,-563.386,-4.7684,-557.666	1/2:127:0,108,16:0:0:108,16:3694,576:-346.81,-47.0099,-14.4986,-299.809,0,-294.993	1/2:196:0,169,25:0:0:169,25:5908,883:-552.549,-71.9288,-21.0547,-480.64,0,-473.114	1/1:114:0,111,2:0:0:111,2:3841,68:-345.543,-33.4143,0,-340.027,-27.9119,-339.425	1/2:8:0,7,1:0:0:7,1:244,36:-23.1311,-3.29724,-1.19003,-20.1922,0,-19.8912	1/2:123:0,59,64:0:0:59,64:2071,2275:-353.479,-184.938,-167.177,-168.09,0,-148.824	1/1:62:0,62,0:0:0:62,0:2185,0:-196.915,-18.6639,0,-196.915,-18.6639,-196.915	1/2:1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chr10	5496918	.	CTAA	GTAG,GTAA	213148	PASS	AB=0.516416,0.481267;ABP=15.13,18.7935;AC=141,47;AF=0.75,0.25;AN=188;AO=7518,2501;CIGAR=1X2M1X,1X3M;DP=10044;DPB=10043.8;DPRA=0,1.23884;EPP=16328.1,5425.18;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.79787,2.23077;MQM=59.9134,59.9768;MQMR=0;NS=94;NUMALT=2;ODDS=0.103213;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=266359,89123;QR=0;RO=0;RPL=0,1;RPP=16328.1,5425.18;RPPR=0;RPR=7518,2500;RUN=1,1;SAF=7518,2501;SAP=16328.1,5433.86;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:75:0,50,25:0:0:50,25:1742,870:-212.728,-71.0863,-56.0348,-141.99,0,-134.464	1/1:78:0,78,0:0:0:78,0:2758,0:-248.462,-23.4803,0,-248.462,-23.4803,-248.462	1/1:150:0,150,0:0:0:150,0:5300,0:-477.1,-45.1545,0,-477.1,-45.1545,-477.1	1/2:196:0,96,100:0:0:96,100:3358,3554:-563.15,-289.964,-261.065,-273.538,0,-243.435	1/2:86:0,46,40:0:0:46,40:1636,1436:-250.816,-117.493,-103.646,-133.68,0,-121.639	1/2:83:0,41,42:0:0:41,42:1458,1512:-242.547,-123.731,-111.389,-119.173,0,-106.53	1/2:124:0,42,82:0:0:42,82:1483,2937:-360.643,-239.878,-227.234,-121.12,0,-96.4358	1/2:174:0,96,77:0:0:96,77:3375,2730:-496.8,-222.402,-193.503,-274.391,0,-251.212	1/2:148:0,71,77:0:0:71,77:2507,2754:-429.077,-224.923,-203.549,-204.509,0,-181.33	1/2:117:0,82,35:0:0:82,35:2892,1241:-336.895,-101.456,-76.772,-235.793,0,-225.257	1/1:99:0,99,0:0:0:99,0:3509,0:-316.022,-29.802,0,-316.022,-29.802,-316.022	1/2:105:0,56,47:0:0:56,47:1950,1665:-294.253,-135.689,-118.831,-158.617,0,-144.469	1/1:76:0,76,0:0:0:76,0:2727,0:-245.673,-22.8783,0,-245.673,-22.8783,-245.673	1/1:128:0,128,0:0:0:128,0:4558,0:-410.378,-38.5318,0,-410.378,-38.5318,-410.378	1/1:60:0,59,0:0:0:59,0:2088,0:-187.829,-17.7608,0,-187.829,-17.7608,-187.829	1/1:73:0,73,0:0:0:73,0:2614,0:-235.479,-21.9752,0,-235.479,-21.9752,-235.479	1/1:51:0,50,0:0:0:50,0:1767,0:-159.02,-15.0515,0,-159.02,-15.0515,-159.02	1/1:40:0,40,0:0:0:40,0:1431,0:-129.088,-12.0412,0,-129.088,-12.0412,-129.088	1/2:53:0,21,32:0:0:21,32:755,1126:-153.608,-92.0149,-85.6933,-61.9489,0,-52.316	1/2:196:0,94,102:0:0:94,102:3332,3630:-567.625,-296.198,-267.901,-271.782,0,-241.077	1/2:167:0,103,64:0:0:103,64:3671,2284:-485.789,-186.556,-155.55,-299.589,0,-280.323	1/1:131:0,131,0:0:0:131,0:4627,0:-416.595,-39.4349,0,-416.595,-39.4349,-416.595	1/1:95:0,94,0:0:0:94,0:3344,0:-300.819,-28.2968,0,-300.819,-28.2968,-300.819	1/1:67:0,67,0:0:0:67,0:2362,0:-212.832,-20.169,0,-212.832,-20.169,-212.832	1/2:88:0,52,35:0:0:52,35:1838,1248:-251.457,-101.77,-86.116,-149.732,0,-139.195	1/1:289:0,289,0:0:0:289,0:10253,0:-922.654,-86.9977,0,-922.654,-86.9977,-922.654	1/2:320:0,180,140:0:0:180,140:6396,4965:-926.003,-404.816,-350.63,-521.542,0,-479.398	1/2:16:0,5,11:0:0:5,11:180,396:-47.3585,-32.6714,-31.1663,-15.0469,0,-11.7356	1/1:300:0,298,1:0:0:298,1:10510,36:-945.503,-89.7069,0,-942.566,-86.7346,-942.265	1/2:146:0,79,65:0:0:79,65:2821,2305:-417.784,-187.793,-164.011,-229.997,0,-210.43	1/1:119:0,119,0:0:0:119,0:4231,0:-380.972,-35.8226,0,-380.972,-35.8226,-380.972	1/1:18:0,18,0:0:0:18,0:635,0:-57.4771,-5.41854,0,-57.4771,-5.41854,-57.4771	1/2:33:0,23,10:0:0:23,10:796,360:-94.4102,-29.734,-22.8103,-65.0318,0,-62.0215	1/1:8:0,8,0:0:0:8,0:277,0:-25.2655,-2.40824,0,-25.2655,-2.40824,-25.2655	1/1:16:0,16,0:0:0:16,0:567,0:-51.361,-4.81648,0,-51.361,-4.81648,-51.361	1/2:26:0,9,17:0:0:9,17:322,612:-76.5525,-50.2959,-47.5867,-26.6149,0,-21.4974	1/1:161:0,161,0:0:0:161,0:5671,0:-510.514,-48.4658,0,-510.514,-48.4658,-510.514	1/2:140:0,86,54:0:0:86,54:3025,1917:-402.764,-156.55,-130.661,-246.567,0,-230.312	1/2:68:0,37,31:0:0:37,31:1307,1108:-197.128,-90.6991,-79.561,-106.785,0,-97.4526	1/2:6:0,5,1:0:0:5,1:180,36:-17.9843,-3.29724,-1.79209,-15.0469,0,-14.7459	1/2:154:0,69,85:0:0:69,85:2447,3011:-444.995,-245.635,-224.864,-199.714,0,-174.127	1/2:43:0,29,14:0:0:29,14:1039,504:-126.219,-41.4837,-32.7538,-85.0945,0,-80.88	1/2:192:0,113,79:0:0:113,79:3997,2768:-551.129,-225.576,-191.56,-325.904,0,-302.123	1/2:52:0,31,21:0:0:31,21:1096,756:-151.306,-62.0456,-52.7137,-89.6174,0,-83.2958	1/1:46:0,46,0:0:0:46,0:1639,0:-147.798,-13.8474,0,-147.798,-13.8474,-147.798	1/2:260:0,121,139:0:0:121,139:4294,4981:-756.433,-406.593,-370.168,-350.197,0,-308.354	1/1:48:0,48,0:0:0:48,0:1712,0:-154.366,-14.4494,0,-154.366,-14.4494,-154.366	1/1:136:0,136,0:0:0:136,0:4826,0:-434.478,-40.9401,0,-434.478,-40.9401,-434.478	1/2:101:0,44,57:0:0:44,57:1559,1995:-289.664,-162.66,-149.415,-127.357,0,-110.198	1/2:107:0,54,53:0:0:54,53:1915,1892:-310.616,-154.602,-138.346,-156.37,0,-140.415	1/2:168:0,88,80:0:0:88,80:3092,2846:-483.728,-232.293,-205.802,-251.788,0,-227.706	1/2:23:0,10,13:0:0:10,13:360,464:-67.5596,-38.1841,-35.1738,-29.734,0,-25.8206	1/2:123:0,61,61:0:0:61,61:2177,2188:-355.939,-178.463,-160.1,-177.474,0,-159.111	1/1:102:0,101,0:0:0:101,0:3596,0:-323.486,-30.404,0,-323.486,-30.404,-323.486	1/1:16:0,16,0:0:0:16,0:569,0:-51.5421,-4.81648,0,-51.5421,-4.81648,-51.5421	1/1:179:0,179,0:0:0:179,0:6364,0:-572.854,-53.8844,0,-572.854,-53.8844,-572.854	1/2:25:0,17,8:0:0:17,8:5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chr10	5625202	.	T	C	190699	PASS	AB=0.540478;ABP=77.3719;AC=141;AF=0.75;AN=188;AO=8863;CIGAR=1X;DP=11286;DPB=11286;DPRA=0;EPP=18851.3;EPPR=5141.23;GTI=2;LEN=1;MEANALT=1.08511;MQM=59.9909;MQMR=60;NS=94;NUMALT=1;ODDS=0.216494;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=316631;QR=84898;RO=2414;RPL=8817;RPP=18851.3;RPPR=5141.23;RPR=46;RUN=1;SAF=2;SAP=19231.4;SAR=8861;SRF=0;SRP=5244.94;SRR=2414;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:19,21:19:653:21:750:-55.7847,0,-47.0481	1/1:123:0,122:0:0:122:4371:-393.203,-36.7257,0	1/1:121:1,120:1:36:120:4265:-380.432,-32.8264,0	0/1:157:49,108:49:1744:108:3848:-299.254,0,-109.983	0/1:49:27,22:27:929:22:792:-56.8552,0,-69.1696	0/1:62:22,40:22:757:40:1425:-109.882,0,-49.7821	0/1:104:53,51:53:1889:51:1820:-132.774,0,-138.979	0/1:227:74,153:74:2568:153:5468:-423.912,0,-163.033	0/1:93:49,44:49:1709:44:1576:-114.136,0,-126.098	0/1:114:59,55:59:2104:55:1939:-140.148,0,-155.312	1/1:140:0,140:0:0:140:5022:-452.125,-42.1442,0	0/1:121:68,53:68:2394:53:1899:-134.763,0,-179.29	1/1:108:0,108:0:0:108:3865:-348.043,-32.5112,0	1/1:197:0,197:0:0:197:7079:-637.166,-59.3029,0	1/1:106:0,106:0:0:106:3791:-341.388,-31.9092,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:142:0,142:0:0:142:5098:-458.961,-42.7463,0	1/1:91:1,90:1:36:90:3232:-287.503,-23.7955,0	0/1:49:25,24:25:896:24:851:-62.159,0,-66.2099	0/1:95:40,55:40:1424:55:1957:-147.806,0,-99.8596	0/1:152:54,98:54:1897:98:3516:-270.893,0,-125.25	1/1:87:0,87:0:0:87:3114:-280.487,-26.1896,0	1/1:94:0,94:0:0:94:3361:-302.705,-28.2968,0	1/1:116:8,108:8:265:108:3868:-324.143,-10.7474,0	0/1:98:31,67:31:1104:67:2408:-187.475,0,-70.1697	1/1:413:0,412:0:0:412:14718:-1324.04,-124.024,0	0/1:200:84,116:84:2917:116:4102:-309.158,0,-202.564	0/1:52:19,33:19:665:33:1184:-91.2148,0,-44.5192	1/1:274:0,274:0:0:274:9785:-880.595,-82.4822,0	0/1:214:85,129:85:3033:129:4628:-352.262,0,-208.779	1/1:217:0,217:0:0:217:7707:-693.667,-65.3235,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	1/1:12:1,11:1:32:11:396:-32.7834,-0.413047,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:16:4,12:4:140:12:432:-34.4047,0,-8.1281	1/1:279:0,279:0:0:279:9988:-898.856,-83.9874,0	0/1:228:103,124:103:3621:124:4444:-331.437,0,-257.406	0/1:119:68,51:68:2398:51:1832:-129.338,0,-180.252	0/1:10:3,7:3:100:7:252:-20.0187,0,-6.32014	0/1:109:42,67:42:1488:67:2396:-183.085,0,-101.402	0/1:43:19,24:19:680:24:864:-65.1383,0,-48.5849	0/1:158:76,82:76:2708:82:2912:-214.752,0,-196.402	0/1:91:37,54:37:1316:54:1944:-147.842,0,-91.3481	1/1:91:0,91:0:0:91:3241:-291.912,-27.3937,0	0/1:91:38,53:38:1348:53:1877:-141.814,0,-94.2265	1/1:116:0,116:0:0:116:4156:-374.223,-34.9195,0	1/1:223:2,221:2:72:221:7898:-704.008,-60.293,0	0/1:96:55,41:55:1929:41:1464:-103.157,0,-144.986	0/1:147:59,88:59:2089:88:3149:-239.382,0,-144.027	0/1:133:64,69:64:2184:69:2480:-183.416,0,-156.785	0/1:17:7,10:7:218:10:341:-25.9003,0,-14.8069	0/1:149:72,77:72:2525:77:2743:-202.258,0,-182.649	1/1:71:0,71:0:0:71:2529:-227.86,-21.3731,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:133:1,132:1:36:132:4723:-421.63,-36.4387,0	0/1:30:15,15:15:532:15:536:-39.5439,0,-39.1822	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	0/1:68:51,17:51:1793:17:612:-34.9434,0,-141.18	1/1:211:0,211:0:0:211:7560:-680.436,-63.5173,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:174:67,106:67:2361:106:3780:-287.962,0,-160.31	1/1:248:0,246:0:0:246:8803:-792.016,-74.0534,0	0/1:86:42,44:42:1458:44:1580:-116.603,0,-105.622	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	0/1:162:80,82:80:2794:82:2914:-213.727,0,-202.934	1/1:76:1,75:1:36:75:2666:-236.585,-19.28,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	1/1:116:0,116:0:0:116:4135:-372.334,-34.9195,0	1/1:138:0,138:0:0:138:4938:-444.569,-41.5421,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:153:0,153:0:0:153:5462:-491.706,-46.0576,0	1/1:96:0,96:0:0:96:3415:-307.563,-28.8989,0	1/1:311:0,310:0:0:310:11032:-992.448,-93.3193,0	1/1:175:0,175:0:0:175:6249:-562.505,-52.6803,0	1/1:150:1,149:1:32:149:5309:-474.746,-41.9552,0	0/1:167:76,91:76:2681:91:3260:-243.349,0,-191.263	1/1:20:0,20:0:0:20:705:-63.773,-6.0206,0	1/1:129:0,129:0:0:129:4582:-412.545,-38.8329,0	0/1:86:35,51:35:1233:51:1824:-138.553,0,-85.3835	0/1:245:106,138:106:3706:138:4896:-367.131,0,-260.084	1/1:130:0,129:0:0:129:4629:-416.41,-38.8329,0	1/1:143:0,143:0:0:143:5089:-458.153,-43.0473,0	1/1:138:0,138:0:0:138:4916:-442.59,-41.5421,0	0/1:247:140,107:140:4965:107:3836:-271.079,0,-372.648	1/1:46:0,46:0:0:46:1627:-146.718,-13.8474,0	0/1:125:62,63:62:2154:63:2237:-163.964,0,-156.496	0/1:108:55,53:55:1933:53:1885:-137.415,0,-141.734	0/1:106:47,59:47:1649:59:2111:-158.35,0,-116.787	0/1:223:121,102:121:4242:102:3656:-262.114,0,-314.835	0/1:115:76,39:76:2709:39:1396:-91.3206,0,-209.434	1/1:134:0,134:0:0:134:4778:-430.176,-40.338,0	1/1:176:0,176:0:0:176:6305:-567.54,-52.9813,0
chr10	5635395	.	TATCG	TG,TGTCG	168175	PASS	AB=0.502901,0.494439;ABP=3.31271,4.12124;AC=138,50;AF=0.734043,0.265957;AN=188;AO=5948,2059;CIGAR=1M3D1M,1M1X3M;DP=8018;DPB=4448.6;DPRA=21.7663,1.17202;EPP=12849.5,4439.4;EPPR=0;GTI=2;LEN=3,1;MEANALT=1.67391,2.16981;MQM=59.9652,59.9752;MQMR=0;NS=94;NUMALT=2;ODDS=1.1872;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=207618,73386;QR=0;RO=0;RPL=9,4;RPP=12840.9,4439.4;RPPR=0;RPR=5939,2055;RUN=1,1;SAF=1,0;SAP=12910.2,4474.07;SAR=5947,2059;SRF=0;SRP=0;SRR=0;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,20,12:0:0:20,12:697,432:-92.2834,-35.6088,-29.5882,-57.0301,0,-53.4177	1/1:95:0,95,0:0:0:95,0:3330,0:-299.92,-28.5979,0,-299.92,-28.5979,-299.92	1/1:121:0,120,1:0:0:120,1:4163,36:-374.502,-36.1236,0,-371.565,-32.8264,-371.264	1/2:133:0,68,65:0:0:68,65:2367,2287:-378.988,-186.523,-166.053,-192.815,0,-173.248	1/2:31:0,19,12:0:0:19,12:672,428:-89.9784,-35.2464,-29.5269,-55.0873,0,-51.4749	1/2:33:0,17,16:0:0:17,16:604,572:-96.2138,-46.9969,-41.8794,-49.5731,0,-44.7566	1/2:116:0,55,61:0:0:55,61:1871,2176:-329.503,-177.744,-161.187,-152.107,0,-133.744	1/2:130:0,72,58:0:0:72,58:2524,2050:-372.424,-167.039,-145.364,-205.738,0,-188.278	1/2:117:0,63,53:0:0:63,53:2212,1895:-334.54,-154.513,-135.548,-180.022,0,-164.067	1/2:111:0,53,58:0:0:53,58:1843,2080:-319.827,-169.988,-154.034,-150.192,0,-132.732	1/1:70:0,70,0:0:0:70,0:2425,0:-218.505,-21.0721,0,-218.505,-21.0721,-218.505	1/2:98:0,45,53:0:0:45,53:1573,1885:-281.927,-153.972,-140.426,-128.308,0,-112.353	1/1:78:0,78,0:0:0:78,0:2749,0:-247.653,-23.4803,0,-247.653,-23.4803,-247.653	1/1:101:0,101,0:0:0:101,0:3540,0:-318.813,-30.404,0,-318.813,-30.404,-318.813	1/1:78:0,78,0:0:0:78,0:2751,0:-247.834,-23.4803,0,-247.834,-23.4803,-247.834	1/1:67:0,67,0:0:0:67,0:2326,0:-209.596,-20.169,0,-209.596,-20.169,-209.596	1/1:65:0,65,0:0:0:65,0:2308,0:-207.981,-19.567,0,-207.981,-19.567,-207.981	1/1:68:0,68,0:0:0:68,0:2343,0:-211.127,-20.47,0,-211.127,-20.47,-211.127	1/2:33:0,18,15:0:0:18,15:629,536:-95.221,-44.0594,-38.6408,-51.5152,0,-46.9998	1/2:110:0,58,51:0:0:58,51:2001,1819:-310.827,-148.278,-130.819,-162.54,0,-147.187	1/2:142:0,72,68:0:0:72,68:2513,2400:-399.822,-195.426,-173.752,-204.387,0,-183.917	1/1:35:0,35,0:0:0:35,0:1219,0:-110.013,-10.5361,0,-110.013,-10.5361,-110.013	1/1:90:0,90,0:0:0:90,0:3154,0:-284.087,-27.0927,0,-284.087,-27.0927,-284.087	1/2:91:0,78,13:0:0:78,13:2678,464:-255.613,-38.1841,-14.7038,-217.784,0,-213.87	1/2:41:0,18,23:0:0:18,23:636,828:-119.714,-67.9204,-62.5019,-52.1495,0,-45.2258	1/1:235:0,235,0:0:0:235,0:8169,0:-735.245,-70.7421,0,-735.245,-70.7421,-735.245	1/2:166:0,77,89:0:0:77,89:2692,3177:-478.357,-259.361,-236.182,-219.349,0,-192.557	1/2:41:0,16,25:0:0:16,25:531,892:-116.019,-73.0739,-68.2575,-43.2866,0,-35.7609	1/1:167:0,166,1:0:0:166,1:5755,36:-517.722,-49.971,0,-514.784,-46.6737,-514.483	1/2:138:0,72,64:0:0:72,64:2474,2300:-388.52,-187.635,-165.961,-200.877,0,-181.611	1/1:94:0,94,0:0:0:94,0:3307,0:-297.853,-28.2968,0,-297.853,-28.2968,-297.853	1/1:4:0,4,0:0:0:4,0:114,0:-10.5417,-1.20412,0,-10.5417,-1.20412,-10.5417	2/2:6:0,0,6:0:0:0,6:0,216:-19.7905,-19.7905,-19.7905,-1.80618,-1.80618,0	1/1:6:0,6,0:0:0:6,0:189,0:-17.3199,-1.80618,0,-17.3199,-1.80618,-17.3199	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/2:4:0,3,1:0:0:3,1:100,36:-11.3714,-3.29724,-2.39415,-8.42735,0,-8.12632	1/1:201:0,201,0:0:0:201,0:7109,0:-639.879,-60.507,0,-639.879,-60.507,-639.879	1/2:152:0,71,81:0:0:71,81:2436,2880:-432.82,-235.053,-213.68,-198.116,0,-173.733	1/2:59:0,28,30:0:0:28,30:982,1071:-167.24,-87.3303,-78.9014,-79.9226,0,-70.8917	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:82:0,45,37:0:0:45,37:1520,1328:-231.872,-108.684,-95.1378,-123.537,0,-112.399	1/2:38:0,9,29:0:0:9,29:316,1044:-111.261,-85.5449,-82.8357,-26.0696,0,-17.3397	1/2:93:0,57,36:0:0:57,36:1979,1282:-265.718,-104.846,-87.6873,-161.224,0,-150.387	1/2:67:0,36,31:0:0:36,31:1268,1101:-193.298,-90.0664,-79.2294,-103.586,0,-94.2537	1/1:75:0,75,0:0:0:75,0:2607,0:-234.879,-22.5773,0,-234.879,-22.5773,-234.879	1/2:86:0,49,36:0:0:49,36:1717,1287:-244.645,-104.936,-90.1855,-139.704,0,-128.867	1/1:53:0,53,0:0:0:53,0:1842,0:-166.057,-15.9546,0,-166.057,-15.9546,-166.057	1/1:126:0,125,1:0:0:125,1:4367,36:-392.85,-37.6288,0,-389.913,-34.3315,-389.612	1/2:109:0,50,58:0:0:50,58:1719,2080:-309.238,-169.651,-154.599,-139.578,0,-122.118	1/2:122:0,59,63:0:0:59,63:2066,2205:-347.843,-179.746,-161.985,-168.447,0,-149.482	1/2:161:0,79,82:0:0:79,82:2736,2926:-461.15,-238.889,-215.108,-222.612,0,-197.928	1/2:5:0,3,2:0:0:3,2:104,72:-14.6799,-6.23466,-5.33157,-8.79971,0,-8.19765	1/2:122:0,55,67:0:0:55,67:1948,2396:-354.411,-195.728,-179.171,-159.039,0,-138.87	1/1:72:0,72,0:0:0:72,0:2541,0:-228.942,-21.6742,0,-228.942,-21.6742,-228.942	1/1:10:0,10,0:0:0:10,0:337,0:-30.6547,-3.0103,0,-30.6547,-3.0103,-30.6547	1/1:111:0,111,0:0:0:111,0:3881,0:-349.492,-33.4143,0,-349.492,-33.4143,-349.492	1/2:49:0,20,29:0:0:20,29:693,1029:-140.511,-84.1913,-78.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chr10	5728298	.	A	T	91193.4	PASS	AB=0.463885;ABP=39.398;AC=140;AF=0.752688;AN=186;AO=4374;CIGAR=1X;DP=6109;DPB=6109;DPRA=0;EPP=9431.67;EPPR=3707.72;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9698;MQMR=60;NS=93;NUMALT=1;ODDS=0.71666;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156216;QR=61408;RO=1730;RPL=7;RPP=9440.33;RPPR=3716.35;RPR=4367;RUN=1;SAF=4373;SAP=9492.35;SAR=1;SRF=1729;SRP=3750.98;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:12,11:12:432:11:387:-28.2422,0,-32.2975	1/1:91:0,91:0:0:91:3251:-292.811,-27.3937,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:101:70,31:70:2504:31:1112:-69.9873,0,-195.209	0/1:28:22,6:22:765:6:216:-11.3617,0,-60.7389	0/1:44:29,15:29:1036:15:540:-35.6912,0,-80.3086	0/1:73:47,26:47:1672:26:936:-62.5843,0,-128.792	0/1:76:47,29:47:1676:29:1022:-69.4117,0,-128.249	0/1:60:26,33:26:928:33:1188:-89.108,0,-65.7178	0/1:66:34,32:34:1208:32:1140:-83.0412,0,-89.1581	1/1:69:0,69:0:0:69:2471:-222.643,-20.7711,0	0/1:73:35,38:35:1248:38:1356:-100.365,0,-90.6497	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:97:0,96:0:0:96:3427:-308.284,-28.8989,0	1/1:57:0,57:0:0:57:2026:-182.612,-17.1587,0	1/1:67:0,66:0:0:66:2359:-212.208,-19.868,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0	0/1:48:24,24:24:860:24:864:-63.6331,0,-63.2724	0/1:213:107,106:107:3723:106:3795:-277.627,0,-271.148	0/1:83:53,30:53:1869:30:1061:-70.8147,0,-143.502	1/1:67:0,67:0:0:67:2389:-215.265,-20.169,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:64:3,61:3:108:61:2166:-185.129,-9.19075,0	0/1:50:21,29:21:733:29:1040:-78.8629,0,-51.2382	1/1:164:0,164:0:0:164:5879:-529.219,-49.3689,0	0/1:130:76,54:76:2682:54:1944:-136.102,0,-202.489	0/1:28:16,12:16:572:12:428:-30.43,0,-43.3846	1/1:101:0,101:0:0:101:3595:-323.758,-30.404,0	0/1:80:36,44:36:1258:44:1561:-116.698,0,-89.4359	1/1:76:0,76:0:0:76:2698:-243.058,-22.8783,0	.:.:.:.:.:.:.:.	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:10:3,7:3:108:7:244:-19.2872,0,-7.06487	1/1:163:0,163:0:0:163:5816:-523.55,-49.0679,0	0/1:77:54,23:54:1925:23:828:-51.6648,0,-150.346	0/1:47:16,31:16:572:31:1112:-86.2429,0,-37.665	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:116:72,44:72:2584:44:1572:-106.852,0,-197.889	0/1:38:16,22:16:572:22:792:-60.1665,0,-40.3743	0/1:74:36,38:36:1280:38:1360:-100.424,0,-93.227	0/1:63:25,38:25:884:38:1357:-103.466,0,-60.9135	1/1:51:0,51:0:0:51:1819:-163.986,-15.3525,0	0/1:55:27,28:27:949:28:996:-73.3982,0,-69.1661	1/1:61:0,61:0:0:61:2166:-195.206,-18.3628,0	1/1:64:0,64:0:0:64:2277:-205.191,-19.2659,0	0/1:77:36,41:36:1281:41:1460:-108.516,0,-92.412	0/1:71:39,32:39:1400:32:1148:-82.2567,0,-104.926	0/1:126:76,50:76:2724:50:1772:-121.833,0,-207.473	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:130:76,54:76:2708:54:1923:-134.209,0,-204.831	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:55:0,55:0:0:55:1958:-176.494,-16.5567,0	0/1:25:16,9:16:572:9:320:-21.6166,0,-44.2877	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:89:39,50:39:1366:50:1776:-133.331,0,-96.4428	1/1:126:0,126:0:0:126:4528:-407.684,-37.9298,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:89:45,44:45:1581:44:1570:-114.8,0,-115.787	1/1:86:0,86:0:0:86:3067:-276.257,-25.8886,0	0/1:53:29,24:29:1040:24:864:-62.128,0,-77.9598	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:88:53,35:53:1881:35:1260:-87.2148,0,-143.076	1/1:111:2,108:2:72:108:3854:-340.22,-26.6364,0	1/1:49:1,48:1:36:48:1720:-151.487,-11.1522,0	1/1:45:0,44:0:0:44:1576:-141.811,-13.2453,0	1/1:87:0,87:0:0:87:3100:-279.229,-26.1896,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:47:1,46:1:36:46:1639:-143.573,-10.5501,0	1/1:104:0,104:0:0:104:3681:-331.48,-31.3071,0	1/1:71:1,70:1:36:70:2512:-222.734,-17.7749,0	1/1:52:0,52:0:0:52:1847:-166.509,-15.6536,0	0/1:93:54,39:54:1916:39:1392:-97.5832,0,-144.722	1/1:6:0,6:0:0:6:210:-19.2417,-1.80618,0	1/1:81:1,80:1:21:80:2856:-255.178,-22.2835,0	0/1:86:49,37:49:1721:37:1324:-93.5735,0,-129.284	0/1:146:68,78:68:2428:78:2786:-207.029,0,-174.826	1/1:87:0,87:0:0:87:3119:-280.936,-26.1896,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	0/1:136:70,66:70:2477:66:2338:-169.739,0,-182.243	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:57:34,23:34:1208:23:824:-57.3246,0,-91.8674	0/1:56:26,30:26:928:30:1067:-79.4835,0,-66.9806	0/1:49:13,36:13:468:36:1292:-101.833,0,-27.7092	0/1:90:33,57:33:1180:57:2031:-155.969,0,-79.4153	0/1:68:49,19:49:1748:19:675:-40.6069,0,-137.134	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:71:0,71:0:0:71:2517:-226.782,-21.3731,0
chr10	5728402	.	T	G	105474	PASS	AB=0.500746;ABP=3.02974;AC=140;AF=0.752688;AN=186;AO=5434;CIGAR=1X;DP=7454;DPB=7454;DPRA=0;EPP=11802.8;EPPR=4378.53;GTI=1;LEN=1;MEANALT=1.04301;MQM=40.3436;MQMR=50.6099;NS=93;NUMALT=1;ODDS=0.227413;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194533;QR=72110;RO=2015;RPL=5434;RPP=11802.8;RPPR=4378.53;RPR=0;RUN=1;SAF=0;SAP=11802.8;SAR=5434;SRF=0;SRP=4378.53;SRR=2015;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:12,11:12:428:11:388:-25.122,0,-31.4903	1/1:110:0,110:0:0:110:3924:-327.829,-33.1133,0	1/1:150:0,150:0:0:150:5372:-453.267,-45.1545,0	0/1:171:102,69:102:3664:69:2468:-161.828,0,-276.836	0/1:29:21,8:21:748:8:288:-16.4879,0,-58.3574	0/1:13:5,8:5:180:8:284:-20.5561,0,-12.5489	0/1:110:41,69:41:1476:69:2464:-181.624,0,-99.1825	0/1:121:63,58:63:2237:58:2076:-138.332,0,-163.335	0/1:84:37,47:37:1328:47:1688:-116.478,0,-92.8037	0/1:78:37,41:37:1328:41:1452:-102.404,0,-94.7341	1/1:57:0,57:0:0:57:2048:-176.523,-17.1587,0	0/1:76:43,33:43:1548:33:1171:-75.3011,0,-113.918	1/1:49:0,49:0:0:49:1760:-148.648,-14.7505,0	1/1:71:0,71:0:0:71:2548:-219.485,-21.3731,0	1/1:42:0,42:0:0:42:1500:-131.41,-12.6433,0	1/1:47:0,47:0:0:47:1684:-143.703,-14.1484,0	1/1:61:0,59:0:0:59:2120:-178.798,-17.7608,0	1/1:53:0,53:0:0:53:1882:-159.286,-15.9546,0	0/1:58:30,28:30:1072:28:1008:-67.9858,0,-78.6865	0/1:187:113,74:113:4048:74:2644:-172.862,0,-306.807	0/1:97:43,54:43:1544:54:1936:-136.428,0,-108.97	1/1:77:0,77:0:0:77:2760:-243.215,-23.1793,0	1/1:78:0,78:0:0:78:2796:-241.837,-23.4803,0	1/1:105:1,104:1:36:104:3721:-314.647,-28.0596,0	0/1:63:26,37:26:924:37:1320:-94.7537,0,-63.0371	1/1:217:0,217:0:0:217:7780:-686.52,-65.3235,0	0/1:290:85,205:85:3044:205:7340:-541.094,0,-183.351	0/1:22:10,12:10:360:12:428:-30.7534,0,-25.4789	1/1:123:0,123:0:0:123:4404:-388.588,-37.0267,0	0/1:94:46,48:46:1652:48:1704:-118.432,0,-119.933	1/1:92:0,92:0:0:92:3304:-287.499,-27.6948,0	1/1:7:0,7:0:0:7:252:-22.0097,-2.10721,0	0/1:17:8,9:8:288:9:324:-22.4939,0,-20.8445	1/1:2:0,2:0:0:2:68:-5.37837,-0.60206,0	1/1:4:0,4:0:0:4:144:-12.4522,-1.20412,0	0/1:6:3,3:3:108:3:108:-7.6791,0,-8.21437	1/1:165:0,165:0:0:165:5924:-521.664,-49.67,0	0/1:169:100,69:100:3584:69:2476:-162.232,0,-268.593	0/1:80:36,44:36:1292:44:1580:-108.836,0,-91.5157	.:.:.:.:.:.:.:.	0/1:90:44,46:44:1569:46:1652:-115.553,0,-113.4	0/1:25:13,12:13:464:12:424:-28.1842,0,-34.336	0/1:134:67,67:67:2404:67:2408:-165.408,0,-175.125	0/1:98:55,43:55:1961:43:1540:-103.76,0,-146.196	1/1:62:0,62:0:0:62:2224:-191.871,-18.6639,0	0/1:72:15,57:15:532:57:2036:-156.696,0,-26.2322	1/1:112:1,111:1:36:111:3968:-326.556,-30.4692,0	1/1:119:1,118:1:21:118:4220:-367.083,-33.7227,0	0/1:66:37,29:37:1324:29:1032:-70.6351,0,-99.046	0/1:138:83,55:83:2964:55:1976:-130.359,0,-224.022	0/1:123:61,62:61:2172:62:2226:-157.184,0,-157.423	0/1:17:11,6:11:396:6:216:-14.1473,0,-30.7698	0/1:152:89,63:89:3188:63:2260:-141.822,0,-238.518	1/1:34:0,34:0:0:34:1216:-107.034,-10.235,0	1/1:20:0,20:0:0:20:720:-60.2783,-6.0206,0	1/1:98:0,98:0:0:98:3516:-300.815,-29.5009,0	0/1:32:17,15:17:612:15:528:-36.7809,0,-45.3664	1/1:11:0,11:0:0:11:396:-35.0953,-3.31133,0	0/1:21:17,4:17:604:4:144:-6.73111,0,-47.1459	0/1:37:16,21:16:561:21:751:-52.2635,0,-39.0735	1/1:84:0,84:0:0:84:2998:-261.895,-25.2865,0	0/1:3:1,2:1:36:2:72:-5.75204,0,-2.68833	0/1:161:106,55:106:3780:55:1965:-125.196,0,-290.193	1/1:140:5,135:5:180:135:4852:-404.401,-25.6282,0	0/1:41:17,24:17:608:24:849:-61.0979,0,-42.4052	1/1:62:0,62:0:0:62:2228:-194.16,-18.6639,0	0/1:173:82,91:82:2944:91:3260:-228.864,0,-211.908	1/1:88:0,88:0:0:88:3156:-273.803,-26.4906,0	1/1:17:0,17:0:0:17:612:-53.1386,-5.11751,0	1/1:85:0,85:0:0:85:3040:-256.815,-25.5876,0	1/1:74:0,74:0:0:74:2643:-232.051,-22.2762,0	1/1:4:0,4:0:0:4:140:-12.6417,-1.20412,0	1/1:140:0,140:0:0:140:4992:-420.034,-42.1442,0	1/1:54:0,54:0:0:54:1910:-159.718,-16.2556,0	1/1:101:0,101:0:0:101:3616:-310.454,-30.404,0	1/1:140:0,139:0:0:139:4976:-433.225,-41.8432,0	1/1:47:0,47:0:0:47:1684:-141.063,-14.1484,0	0/1:99:53,46:53:1880:46:1640:-105.455,0,-138.134	1/1:22:0,22:0:0:22:792:-67.112,-6.62266,0	1/1:89:0,89:0:0:89:3185:-273.905,-26.7917,0	0/1:77:35,42:35:1237:42:1504:-104.019,0,-87.7135	0/1:205:87,118:87:3120:118:4220:-304.476,0,-217.88	1/1:69:0,69:0:0:69:2476:-217.03,-20.7711,0	1/1:44:0,44:0:0:44:1576:-138.393,-13.2453,0	1/1:57:0,57:0:0:57:2044:-178.893,-17.1587,0	0/1:145:71,74:71:2552:74:2664:-188.077,0,-185.69	1/1:20:0,20:0:0:20:716:-61.1452,-6.0206,0	0/1:53:30,22:30:1080:22:792:-51.4344,0,-80.9316	0/1:66:34,32:34:1224:32:1144:-76.1822,0,-89.7998	0/1:61:32,29:32:1152:29:1036:-71.5786,0,-85.2972	0/1:88:37,51:37:1332:51:1820:-129.166,0,-92.9081	0/1:57:36,21:36:1288:21:752:-49.0609,0,-98.2194	1/1:37:0,37:0:0:37:1324:-115.654,-11.1381,0	1/1:92:0,91:0:0:91:3264:-281.788,-27.3937,0
chr10	5792076	.	A	T	130375	PASS	AB=0.453009;ABP=88.1118;AC=139;AF=0.739362;AN=188;AO=6228;CIGAR=1X;DP=8677;DPB=8677;DPRA=31.0896;EPP=13526.9;EPPR=5316.6;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.9994;MQMR=60;NS=94;NUMALT=1;ODDS=0.833818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=223232;QR=85608;RO=2447;RPL=0;RPP=13526.9;RPPR=5316.6;RPR=6228;RUN=1;SAF=6228;SAP=13526.9;SAR=0;SRF=2447;SRP=5316.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:14,3:14:496:3:108:-4.95766,0,-39.8568	1/1:361:1,360:1:36:360:12885:-1155.87,-105.074,0	1/1:97:0,97:0:0:97:3477:-313.14,-29.1999,0	0/1:209:116,93:116:3992:93:3315:-235.654,0,-296.564	0/1:47:29,18:29:1013:18:648:-44.5035,0,-77.331	0/1:35:27,8:27:948:8:288:-15.7314,0,-75.0986	0/1:117:73,44:73:2522:44:1580:-107.271,0,-192.012	0/1:70:40,30:40:1363:30:1080:-76.4412,0,-101.888	0/1:68:42,26:42:1423:26:936:-64.0894,0,-107.888	0/1:83:35,48:35:1236:48:1724:-130.46,0,-86.5588	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:65:34,31:34:1186:31:1112:-80.8244,0,-87.4738	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:75:0,75:0:0:75:2695:-242.794,-22.5773,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:67:0,67:0:0:67:2399:-216.166,-20.169,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:35:15,20:15:525:20:716:-54.2317,0,-37.042	0/1:138:84,54:84:2927:54:1936:-132.974,0,-222.122	0/1:144:79,65:79:2723:65:2332:-166.791,0,-201.966	1/1:64:0,64:0:0:64:2282:-205.641,-19.2659,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:93:8,84:8:280:84:2995:-244.241,-2.51418,0	0/1:31:17,14:17:604:14:504:-36.3662,0,-45.3587	1/1:291:0,291:0:0:291:10442:-939.693,-87.5997,0	0/1:194:105,89:105:3679:89:3200:-229.822,0,-272.915	0/1:31:12,19:12:416:19:684:-52.5584,0,-28.4397	1/1:250:0,250:0:0:250:8957:-806.108,-75.2575,0	0/1:196:97,99:97:3425:99:3552:-260.886,0,-249.464	1/1:110:0,110:0:0:110:3933:-354.161,-33.1133,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:201:0,201:0:0:201:7197:-647.784,-60.507,0	0/1:219:145,74:145:5098:74:2656:-173.36,0,-393.045	0/1:61:24,37:24:860:37:1328:-101.459,0,-59.359	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:164:79,85:79:2769:85:3052:-225.54,0,-200.084	0/1:31:16,15:16:572:15:540:-39.6046,0,-42.4815	0/1:74:42,32:42:1488:32:1152:-81.7139,0,-111.938	0/1:70:35,35:35:1241:35:1252:-91.913,0,-90.9204	1/1:62:0,62:0:0:62:2201:-198.354,-18.6639,0	0/1:75:31,44:31:1069:44:1580:-119.914,0,-73.9383	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	1/1:176:0,176:0:0:176:6308:-567.812,-52.9813,0	0/1:134:83,51:83:2894:51:1824:-124.103,0,-220.36	0/1:187:106,81:106:3704:81:2908:-205.662,0,-277.278	0/1:160:89,71:89:3018:71:2537:-180.415,0,-223.687	0/1:10:9,1:9:308:1:36:-0.587975,0,-25.0416	0/1:100:58,42:58:2010:42:1504:-105.552,0,-151.068	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:107:1,106:1:36:106:3812:-339.678,-28.6119,0	0/1:34:17,17:17:588:17:608:-44.817,0,-43.0099	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:106:56,50:56:1984:50:1781:-128.662,0,-146.925	1/1:124:0,124:0:0:124:4452:-400.849,-37.3277,0	0/1:9:7,2:7:244:2:72:-4.12745,0,-19.5902	0/1:197:91,106:91:3204:106:3804:-283.254,0,-229.285	1/1:219:2,217:2:68:217:7788:-694.49,-59.4679,0	0/1:73:43,30:43:1513:30:1068:-74.4569,0,-114.486	1/1:63:0,63:0:0:63:2239:-201.774,-18.9649,0	0/1:197:95,102:95:3328:102:3660:-270.3,0,-240.441	1/1:87:4,83:4:144:83:2964:-253.68,-12.876,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:83:0,83:0:0:83:2964:-266.994,-24.9855,0	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:101:0,101:0:0:101:3632:-327.084,-30.404,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:137:0,137:0:0:137:4908:-441.869,-41.2411,0	1/1:192:0,192:0:0:192:6877:-618.996,-57.7978,0	0/1:74:59,15:59:2104:15:540:-26.6603,0,-167.353	0/1:140:70,70:70:2462:70:2508:-183.828,0,-179.688	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:111:0,111:0:0:111:3991:-359.378,-33.4143,0	0/1:101:51,50:51:1785:50:1788:-130.799,0,-130.527	0/1:176:100,76:100:3484:76:2723:-192.332,0,-260.796	1/1:103:0,103:0:0:103:3686:-331.942,-31.0061,0	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:117:0,117:0:0:117:4196:-377.821,-35.2205,0	0/1:179:97,82:97:3421:82:2948:-211.669,0,-254.222	1/1:37:0,36:0:0:36:1296:-116.584,-10.8371,0	0/1:80:43,37:43:1528:37:1332:-96.1,0,-113.731	0/1:73:35,38:35:1252:38:1368:-101.446,0,-91.0099	0/1:33:15,18:15:521:18:644:-48.3566,0,-37.2823	0/1:94:42,52:42:1496:52:1860:-139.383,0,-106.638	0/1:78:51,27:51:1812:27:968:-63.957,0,-139.881	1/1:25:1,24:1:21:24:860:-75.6219,-5.4258,0	1/1:97:0,97:0:0:97:3488:-314.13,-29.1999,0
chr10	5792195	.	T	C	49017.1	PASS	AB=0.565133;ABP=154.345;AC=52;AF=0.276596;AN=188;AO=2333;CIGAR=1X;DP=7406;DPB=7406;DPRA=1.35701;EPP=2491.15;EPPR=4308.64;GTI=2;LEN=1;MEANALT=1.09434;MQM=59.9661;MQMR=59.9755;NS=94;NUMALT=1;ODDS=0.981077;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83242;QR=181335;RO=5068;RPL=1984;RPP=2491.15;RPPR=4308.64;RPR=349;RUN=1;SAF=0;SAP=5069.06;SAR=2333;SRF=0;SRP=11008;SRR=5068;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:20,29:20:716:29:1025:-77.8102,0,-50.0172	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.309	0/1:288:134,153:134:4796:153:5488:-407.289,0,-345.041	0/1:26:11,15:11:388:15:536:-40.7237,0,-27.4306	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	0/1:99:36,63:36:1288:63:2247:-172.691,0,-86.4216	0/1:81:26,54:26:932:54:1944:-150.794,0,-59.7567	0/1:129:49,79:49:1740:79:2815:-214.806,0,-118.101	0/1:138:78,60:78:2783:60:2142:-151.495,0,-209.168	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:101:47,54:47:1683:54:1940:-144.472,0,-121.352	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.462	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:29:17,12:17:612:12:432:-30.4913,0,-46.6836	0/1:85:37,48:37:1328:48:1728:-130.218,0,-94.2347	0/1:287:135,152:135:4820:152:5394:-399.198,0,-346.785	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:16:14,2:14:504:2:68:-1.64123,0,-40.8816	0/1:56:25,31:25:900:31:1101:-82.5416,0,-64.4633	0/0:348:345,3:345:12325:3:108:0,-94.6833,-1099.02	0/1:223:110,113:110:3925:113:4055:-298.006,0,-286.312	0/1:40:20,20:20:720:20:720:-53.0876,0,-53.0876	0/0:197:197,0:197:7061:0:0:0,-59.3029,-635.358	0/1:104:39,65:39:1404:65:2336:-179.192,0,-95.3522	0/0:106:106,0:106:3768:0:0:0,-31.9092,-339.319	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:14:7,7:7:248:7:248:-18.4498,0,-18.4498	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:222:222,0:222:7980:0:0:0,-66.8287,-718.217	0/1:133:44,89:44:1568:89:3184:-246.747,0,-101.375	0/1:47:25,22:25:892:22:771:-55.5613,0,-66.4513	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:141:60,81:60:2148:81:2896:-218.431,0,-151.142	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:81:28,53:28:1000:53:1880:-145.095,0,-65.9319	0/1:59:26,33:26:932:33:1173:-88.1148,0,-66.4274	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:90:40,50:40:1432:50:1792:-134.47,0,-102.085	0/0:76:76,0:76:2690:0:0:0,-22.8783,-242.343	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/1:81:36,45:36:1288:45:1610:-120.806,0,-91.8402	0/1:102:50,52:50:1781:52:1848:-135.895,0,-129.866	0/1:77:28,49:28:995:49:1760:-135.505,0,-66.6847	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:94:39,55:39:1404:55:1980:-150.178,0,-98.3625	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:111:111,0:111:3968:0:0:0,-33.4143,-357.312	0/1:32:8,23:8:284:23:820:-64.4691,0,-16.2476	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:18:5,13:5:180:13:468:-37.0411,0,-11.1335	0/1:83:34,49:34:1220:49:1738:-131.718,0,-85.1213	0/0:88:88,0:88:3137:0:0:0,-26.4906,-282.555	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:113:60,53:60:2152:53:1854:-133.12,0,-159.441	0/0:80:80,0:80:2867:0:0:0,-24.0824,-258.266	0/1:56:33,23:33:1184:23:820:-57.2648,0,-90.0106	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:143:54,88:54:1944:88:3131:-238.91,0,-132.13	0/0:99:96,3:96:3418:3:108:0,-19.7268,-297.756	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:54:54,0:54:1913:0:0:0,-16.2556,-172.445	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:170:170,0:170:6088:0:0:0,-51.1751,-548.021	0/0:164:164,0:164:5865:0:0:0,-49.3689,-527.96	0/0:96:96,0:96:3420:0:0:0,-28.8989,-308.013	0/0:158:157,1:157:5628:1:36:0,-43.9645,-503.042	0/1:55:22,33:22:784:33:1172:-89.2308,0,-54.3273	0/1:98:43,55:43:1544:55:1960:-147.175,0,-109.752	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/0:84:84,0:84:3000:0:0:0,-25.2865,-270.232	0/1:115:40,75:40:1432:75:2685:-207.256,0,-94.5591	0/1:180:79,101:79:2816:101:3610:-270.92,0,-199.495	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.269	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:155:77,78:77:2759:78:2748:-200.903,0,-201.891	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:63:26,37:26:932:37:1324:-100.497,0,-65.234	0/1:65:25,40:25:900:40:1415:-108.08,0,-61.7541	0/1:38:10,28:10:356:28:972:-76.349,0,-20.9421	0/1:72:26,46:26:928:46:1644:-126.574,0,-62.1641	0/1:72:16,56:16:576:56:2012:-159.679,0,-30.5008	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.034
chr10	6211310	.	C	T	20170.7	PASS	AB=0.510417;ABP=5.18177;AC=48;AF=0.255319;AN=188;AO=1183;CIGAR=1X;DP=4387;DPB=4387;DPRA=1.17738;EPP=2434.77;EPPR=6657.37;GTI=2;LEN=1;MEANALT=1.03846;MQM=59.9899;MQMR=59.9944;NS=94;NUMALT=1;ODDS=0.915175;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42005;QR=114396;RO=3199;RPL=1167;RPP=2434.77;RPPR=6665.87;RPR=16;RUN=1;SAF=0;SAP=2571.86;SAR=1183;SRF=1;SRP=6940.87;SRR=3198;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:64:27,37:27:968:37:1304:-98.3935,0,-68.1714	0/1:22:14,8:14:500:8:288:-19.6447,0,-38.7135	0/1:17:10,7:10:356:7:248:-17.5467,0,-27.2637	0/1:52:29,23:29:1031:23:800:-56.664,0,-77.4491	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/1:71:33,38:33:1184:38:1352:-100.607,0,-85.4952	0/1:38:18,20:18:648:20:712:-52.9675,0,-47.2127	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:45:22,23:22:788:23:815:-60.1244,0,-57.6984	0/0:34:34,0:34:1183:0:0:0,-10.235,-106.771	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	0/1:40:22,18:22:784:18:648:-46.6107,0,-58.8427	0/1:64:22,42:22:792:42:1504:-116.381,0,-52.3398	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:24:23,1:23:804:1:36:0,-3.62644,-69.0783	0/1:41:36,5:36:1287:5:180:-4.20984,0,-103.791	0/1:46:17,29:17:612:29:1016:-77.9043,0,-41.5661	0/0:118:118,0:118:4228:0:0:0,-35.5215,-380.698	0/1:112:51,61:51:1828:61:2164:-161.312,0,-131.086	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/1:45:19,26:19:680:26:932:-70.6525,0,-47.9828	0/0:33:32,0:32:1140:0:0:0,-9.63296,-102.549	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0704	0/1:10:3,7:3:108:7:237:-18.6488,0,-7.06487	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/0:92:92,0:92:3287:0:0:0,-27.6948,-296.049	0/1:117:48,69:48:1700:69:2440:-184.636,0,-118.063	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:89:52,37:52:1868:37:1276:-88.3459,0,-141.608	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:71:36,35:36:1292:35:1248:-91.2517,0,-95.2106	0/1:29:16,13:16:572:13:462:-33.1863,0,-43.0836	0/0:30:30,0:30:1071:0:0:0,-9.0309,-96.7016	0/1:90:42,48:42:1504:48:1690:-125.29,0,-108.562	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:76:76,0:76:2736:0:0:0,-22.8783,-246.479	0/1:93:55,38:55:1976:38:1356:-94.3447,0,-150.119	0/1:102:40,62:40:1440:62:2208:-168.28,0,-99.1927	0/1:72:41,31:41:1472:31:1112:-78.7172,0,-111.102	0/1:20:7,13:7:252:13:464:-36.0769,0,-17.0084	0/1:90:47,42:47:1684:42:1478:-106.159,0,-124.696	0/0:9:8,0:8:288:0:0:0,-2.40824,-25.9076	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/1:41:21,20:21:748:20:700:-50.9812,0,-55.3031	0/0:124:122,1:122:4364:1:36:0,-33.7882,-389.336	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:119:61,58:61:2188:58:2051:-149.038,0,-161.363	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/1:39:15,24:15:540:24:856:-65.6209,0,-37.1964	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:81:28,53:28:1004:53:1900:-146.894,0,-66.2924	0/0:52:52,0:52:1831:0:0:0,-15.6536,-165.066	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:26:14,12:14:504:12:428:-31.032,0,-37.8713	0/0:64:63,1:63:2218:1:36:0,-15.6676,-196.283	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:104:104,0:104:3740:0:0:0,-31.3071,-336.799	0/1:81:39,42:39:1392:42:1477:-108.839,0,-101.196	0/1:39:18,21:18:648:21:727:-54.0078,0,-46.9117	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:33:22,11:22:788:11:392:-25.6861,0,-61.3108	0/0:72:71,1:71:2548:1:36:0,-18.0759,-225.972	0/0:81:80,0:80:2864:0:0:0,-24.0824,-257.638	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/1:62:31,31:31:1089:31:1116:-82.0878,0,-79.6534	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:30:17,13:17:608:13:468:-33.4287,0,-46.0211	0/1:42:18,24:18:648:24:864:-65.4393,0,-46.0086	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/1:93:52,41:52:1864:41:1472:-104.78,0,-140.044	0/1:48:16,32:16:572:32:1152:-89.5407,0,-37.364	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031
chr10	6228409	.	C	A	153589	PASS	AB=0.520696;ABP=14.3356;AC=141;AF=0.75;AN=188;AO=5662;CIGAR=1X;DP=7131;DPB=7131;DPRA=0;EPP=215.301;EPPR=99.3925;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.8101;MQMR=59.9925;NS=94;NUMALT=1;ODDS=4.3145;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200417;QR=52088;RO=1465;RPL=29;RPP=12047.3;RPPR=3132.32;RPR=5633;RUN=1;SAF=3232;SAP=249.69;SAR=2430;SRF=866;SRP=108.677;SRR=599;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:9,11:9:316:11:392:-29.5995,0,-22.7583	1/1:82:0,82:0:0:82:2876:-258.961,-24.6845,0	1/1:76:1,75:1:32:75:2629:-233.647,-19.679,0	0/1:61:28,33:28:1008:33:1153:-85.7097,0,-72.6735	0/1:26:12,14:12:423:14:492:-36.7856,0,-30.5783	0/1:29:10,19:10:360:19:675:-52.3424,0,-24.0144	0/1:72:29,43:29:1024:43:1521:-115.504,0,-70.7984	1/1:76:1,75:1:36:75:2653:-235.41,-19.28,0	0/1:50:17,33:17:612:33:1169:-90.46,0,-40.3619	0/1:36:11,25:11:377:25:842:-65.2459,0,-23.4209	1/1:178:0,178:0:0:178:6382:-574.464,-53.5833,0	0/1:132:58,74:58:2045:74:2629:-197.066,0,-144.584	1/1:191:0,191:0:0:191:6795:-611.605,-57.4967,0	1/1:154:0,154:0:0:154:5457:-491.183,-46.3586,0	1/1:140:0,140:0:0:140:4955:-446.099,-42.1442,0	1/1:134:0,134:0:0:134:4791:-431.346,-40.338,0	1/1:121:0,121:0:0:121:4331:-389.939,-36.4246,0	1/1:140:1,139:1:21:139:4971:-445.427,-40.0443,0	0/1:211:119,92:119:4194:92:3264:-230.272,0,-314.118	0/1:74:28,46:28:991:46:1615:-123.359,0,-67.2273	0/1:60:33,27:33:1161:27:939:-66.7584,0,-86.7329	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	1/1:54:3,51:3:93:51:1754:-149.44,-7.57889,0	0/1:26:13,13:13:464:13:455:-33.4552,0,-34.2707	1/1:109:0,109:0:0:109:3866:-348.119,-32.8123,0	0/1:87:39,48:39:1383:48:1712:-128.176,0,-98.5785	0/1:71:37,34:37:1332:34:1211:-87.9224,0,-98.8093	1/1:68:0,68:0:0:68:2373:-213.827,-20.47,0	0/1:26:12,14:12:432:14:487:-36.3324,0,-31.3898	1/1:37:0,37:0:0:37:1311:-118.289,-11.1381,0	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:8:4,4:4:135:4:144:-10.9054,0,-10.0743	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	1/1:278:0,278:0:0:278:9828:-884.439,-83.6863,0	0/1:37:18,19:18:648:19:659:-48.4942,0,-47.5138	0/1:151:67,83:67:2385:83:2932:-218.589,0,-169.392	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:56:15,41:15:540:41:1451:-114.011,0,-32.0789	0/1:88:46,42:46:1656:42:1508:-109.515,0,-122.838	0/1:59:27,32:27:968:32:1119:-83.2491,0,-69.6766	0/1:150:86,64:86:3067:64:2283:-160.577,0,-231.104	1/1:141:0,141:0:0:141:4986:-448.882,-42.4452,0	0/1:34:23,11:23:824:11:383:-24.5682,0,-64.2483	1/1:52:0,52:0:0:52:1830:-164.979,-15.6536,0	1/1:87:1,86:1:36:86:3016:-268.071,-22.5913,0	0/1:37:10,27:10:360:27:960:-75.5711,0,-21.6062	0/1:58:30,28:30:1080:28:989:-71.756,0,-80.0535	0/1:52:20,32:20:712:32:1114:-84.9088,0,-48.7531	0/1:7:3,4:3:104:4:140:-10.8374,0,-7.5956	0/1:34:15,19:15:503:19:671:-50.4808,0,-35.352	1/1:36:0,36:0:0:36:1263:-113.961,-10.8371,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:53:0,53:0:0:53:1879:-169.338,-15.9546,0	0/1:17:8,9:8:284:9:308:-22.9343,0,-20.7858	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	1/1:168:0,168:0:0:168:5953:-535.876,-50.573,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:45:20,25:20:712:25:872:-65.2464,0,-50.8603	1/1:77:0,77:0:0:77:2693:-242.609,-23.1793,0	0/1:32:11,21:11:396:21:748:-58.0123,0,-26.3498	1/1:41:0,41:0:0:41:1460:-131.692,-12.3422,0	0/1:57:26,30:26:913:30:1025:-75.335,0,-65.2668	1/1:41:0,41:0:0:41:1452:-130.973,-12.3422,0	1/1:87:2,85:2:72:85:3027:-265.821,-19.3529,0	0/1:29:16,13:16:567:13:452:-32.2812,0,-42.6309	1/1:180:0,180:0:0:180:6378:-574.109,-54.1854,0	1/1:12:0,12:0:0:12:422:-38.2829,-3.61236,0	1/1:22:0,22:0:0:22:773:-69.8678,-6.62266,0	1/1:37:0,37:0:0:37:1299:-117.01,-11.1381,0	1/1:80:0,80:0:0:80:2830:-254.94,-24.0824,0	1/1:67:0,67:0:0:67:2379:-214.358,-20.169,0	0/1:35:15,20:15:540:20:688:-51.6933,0,-38.4005	0/1:52:24,28:24:856:28:991:-73.8384,0,-61.7075	1/1:12:0,12:0:0:12:412:-37.4087,-3.61236,0	1/1:59:0,59:0:0:59:2095:-188.814,-17.7608,0	0/1:38:17,21:17:608:21:720:-53.6735,0,-43.6129	1/1:138:0,138:0:0:138:4845:-436.197,-41.5421,0	1/1:146:0,145:0:0:145:5167:-464.807,-43.6494,0	1/1:136:0,136:0:0:136:4855:-437.101,-40.9401,0	1/1:168:0,168:0:0:168:5980:-538.296,-50.573,0	0/1:194:88,106:88:3126:106:3747:-279.022,0,-223.167	1/1:72:0,72:0:0:72:2538:-228.637,-21.6742,0	0/1:125:51,74:51:1815:74:2619:-198.324,0,-126.002	0/1:138:71,67:71:2531:67:2363:-171.367,0,-186.499	0/1:138:62,76:62:2219:76:2732:-204.58,0,-158.432	0/1:206:109,97:109:3883:97:3457:-249.302,0,-287.653	0/1:142:98,43:98:3500:43:1502:-92.6467,0,-272.406	1/1:27:0,27:0:0:27:960:-86.7139,-8.12781,0	1/1:251:0,251:0:0:251:8904:-801.341,-75.5585,0
chr10	6269214	.	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chr10	6340290	.	T	C	35647.5	PASS	AB=0.522266;ABP=20.4165;AC=44;AF=0.23913;AN=184;AO=2134;CIGAR=1X;DP=8699;DPB=8699;DPRA=1.21157;EPP=4636.93;EPPR=14232.7;GTI=0;LEN=1;MEANALT=1.03774;MQM=59.9691;MQMR=59.9619;NS=92;NUMALT=1;ODDS=4.96287;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75730;QR=234541;RO=6561;RPL=0;RPP=4636.93;RPPR=14232.7;RPR=2134;RUN=1;SAF=2134;SAP=4636.93;SAR=0;SRF=6561;SRP=14250;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:27,16:27:960:16:568:-38.5076,0,-73.772	0/0:134:133,1:133:4750:1:36:0,-36.7397,-424.06	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.986	0/1:111:51,60:51:1828:60:2140:-159.454,0,-131.387	0/1:53:26,26:26:936:26:928:-67.8634,0,-68.5845	0/1:54:20,34:20:716:34:1216:-93.4909,0,-48.5121	0/1:135:55,80:55:1958:80:2833:-214.57,0,-135.855	0/0:189:189,0:189:6740:0:0:0,-56.8947,-606.665	0/1:106:65,41:65:2320:41:1435:-97.5328,0,-177.149	0/1:93:44,49:44:1571:49:1760:-130.688,0,-113.685	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:64:31,33:31:1104:33:1184:-87.6024,0,-80.4047	0/0:93:93,0:93:3335:0:0:0,-27.9958,-300.366	0/0:102:101,1:101:3620:1:36:0,-27.1068,-322.407	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.422	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:41:19,22:19:684:22:771:-57.3681,0,-49.5481	0/1:149:50,99:50:1788:99:3523:-272.427,0,-116.349	0/1:122:77,43:77:2752:43:1523:-100.879,0,-211.439	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:86:83,3:83:2953:3:108:0,-15.8134,-255.925	0/0:134:125,9:125:4474:9:311:0,-12.0143,-374.505	0/1:72:36,36:36:1288:36:1284:-94.1893,0,-94.5494	0/0:246:246,0:246:8803:0:0:0,-74.0534,-791.575	0/1:208:119,89:119:4265:89:3196:-225.248,0,-321.412	0/1:67:33,34:33:1180:34:1220:-89.9378,0,-86.339	0/0:273:272,1:272:9712:1:36:0,-78.5829,-870.404	0/1:171:81,90:81:2883:90:3194:-236.208,0,-208.231	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.73	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:244:244,0:244:8760:0:0:0,-73.4513,-788.385	0/1:181:91,90:91:3244:90:3186:-232.477,0,-237.696	0/1:50:23,27:23:828:27:952:-70.9437,0,-59.7926	.:.:.:.:.:.:.:.	0/0:239:236,3:236:8431:3:108:0,-61.871,-747.784	0/1:39:17,22:17:608:22:784:-59.1437,0,-43.3119	0/1:112:46,66:46:1644:66:2343:-177.413,0,-114.533	0/1:93:50,43:50:1796:43:1527:-109.727,0,-133.927	0/0:79:79,0:79:2802:0:0:0,-23.7814,-252.42	0/1:80:40,40:40:1432:40:1393:-101.526,0,-105.095	0/0:115:114,0:114:4080:0:0:0,-34.3174,-367.018	0/0:145:143,2:143:5095:2:72:0,-36.8126,-451.859	0/1:84:28,56:28:1008:56:1999:-154.897,0,-65.7498	0/1:115:55,60:55:1957:60:2156:-159.688,0,-141.785	0/1:98:36,62:36:1280:62:2200:-168.765,0,-86.0023	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:143:77,66:77:2748:66:2327:-166.641,0,-204.515	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:112:112,0:112:4000:0:0:0,-33.7154,-360.186	0/1:67:39,28:39:1396:28:974:-67.8017,0,-105.77	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:17:6,11:6:216:11:380:-29.4139,0,-14.673	0/1:100:44,56:44:1580:56:1984:-148.732,0,-112.389	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.671	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:223:82,141:82:2936:141:4986:-381.762,0,-197.345	0/0:158:156,2:156:5564:2:72:0,-40.726,-494.02	0/1:88:44,44:44:1580:44:1553:-113.571,0,-116.001	0/0:90:90,0:90:3192:0:0:0,-27.0927,-286.992	0/1:130:46,84:46:1644:84:2995:-230.648,0,-109.115	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:59:32,27:32:1144:27:964:-69.3161,0,-85.5087	0/0:99:99,0:99:3536:0:0:0,-29.802,-318.45	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:109:109,0:109:3877:0:0:0,-32.8123,-349.056	0/0:86:86,0:86:3065:0:0:0,-25.8886,-276.073	0/0:101:101,0:101:3611:0:0:0,-30.404,-325.196	0/0:136:136,0:136:4888:0:0:0,-40.9401,-440.068	0/1:98:54,44:54:1927:44:1572:-112.271,0,-144.205	0/1:111:49,62:49:1747:62:2173:-162.423,0,-124.099	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.603	0/1:104:44,60:44:1572:60:2132:-160.841,0,-110.464	0/0:133:133,0:133:4744:0:0:0,-40.037,-427.12	0/0:99:98,1:98:3516:1:36:0,-26.2037,-313.051	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.24	0/0:107:107,0:107:3801:0:0:0,-32.2102,-342.289	0/1:158:90,68:90:3228:68:2388:-167.343,0,-243.179	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/1:88:47,41:47:1683:41:1447:-104.035,0,-125.266	0/1:100:54,46:54:1940:46:1631:-116.975,0,-144.773	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/1:83:42,41:42:1508:41:1464:-107.071,0,-111.029	0/1:81:32,49:32:1140:49:1734:-131.96,0,-78.5258	0/0:132:132,0:132:4685:0:0:0,-39.736,-421.812	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536
chr10	6340383	.	AAGG	GAGA,AAGA	154539	PASS	AB=0.463654,0.532417;ABP=43.8929,35.5312;AC=141,47;AF=0.75,0.25;AN=188;AO=5292,1907;CIGAR=1X2M1X,3M1X;DP=7226;DPB=7225.75;DPRA=0,1.04015;EPP=11373.2,4135.33;EPPR=9.52472;GTI=1;LEN=4,1;MEANALT=1.80851,2.24528;MQM=59.9747,59.9932;MQMR=60;NS=94;NUMALT=2;ODDS=2.03551;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=187496,68299;QR=108;RO=3;RPL=5278,1907;RPP=11373.2,4144.01;RPPR=9.52472;RPR=14,0;RUN=1,1;SAF=0,1;SAP=11494.4,4135.33;SAR=5292,1906;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:55:0,32,23:0:0:32,23:1126,816:-158.497,-66.838,-57.2051,-92.0129,0,-85.0892	1/1:34:0,33,1:0:0:33,1:1159,36:-104.255,-9.93399,0,-101.318,-6.63675,-101.017	1/1:161:0,160,0:0:0:160,0:5662,0:-509.455,-48.1648,0,-509.455,-48.1648,-509.455	1/2:156:0,68,87:0:0:68,87:2395,3102:-447.928,-252.946,-232.476,-195.064,0,-168.874	1/2:33:0,14,19:0:0:14,19:501,680:-96.6643,-55.8096,-51.5952,-41.2124,0,-35.4929	1/2:12:0,8,4:0:0:8,4:288,144:-35.6088,-12.1095,-9.70126,-23.8592,0,-22.655	1/2:26:0,16,10:0:0:16,10:575,352:-75.9214,-29.0079,-24.1914,-47.2682,0,-44.2579	1/1:112:0,111,0:0:0:111,0:3915,0:-352.188,-33.4143,0,-352.188,-33.4143,-352.188	1/2:70:0,27,43:0:0:27,43:970,1544:-205.44,-126.309,-118.181,-79.49,0,-66.5457	1/2:59:0,36,23:0:0:36,23:1276,824:-171.509,-67.5596,-56.7225,-104.306,0,-97.382	1/1:87:0,87,0:0:0:87,0:3100,0:-279.228,-26.1896,0,-279.228,-26.1896,-279.228	1/2:103:1,48,54:1:36:48,54:1710,1940:-294.401,-155.323,-143.811,-136.439,0,-123.121	1/1:72:0,72,0:0:0:72,0:2558,0:-230.47,-21.6742,0,-230.47,-21.6742,-230.47	1/1:81:0,80,0:0:0:80,0:2838,0:-255.299,-24.0824,0,-255.299,-24.0824,-255.299	1/1:66:0,66,0:0:0:66,0:2354,0:-212.119,-19.868,0,-212.119,-19.868,-212.119	1/1:51:0,51,0:0:0:51,0:1825,0:-164.531,-15.3525,0,-164.531,-15.3525,-164.531	1/1:34:0,34,0:0:0:34,0:1205,0:-108.755,-10.235,0,-108.755,-10.235,-108.755	1/1:34:0,33,1:0:0:33,1:1179,36:-106.058,-9.93399,0,-103.121,-6.63675,-102.819	1/2:25:0,13,12:0:0:13,12:455,432:-72.6221,-35.6088,-31.6954,-37.3683,0,-33.756	1/2:172:0,66,106:0:0:66,106:2354,3787:-501.014,-309.119,-289.251,-192.251,0,-160.342	1/2:92:0,50,42:0:0:50,42:1789,1504:-268.894,-123.011,-107.96,-146.241,0,-133.598	1/1:63:0,63,0:0:0:63,0:2237,0:-201.594,-18.9649,0,-201.594,-18.9649,-201.594	1/1:89:0,89,0:0:0:89,0:3127,0:-281.658,-26.7917,0,-281.658,-26.7917,-281.658	1/2:31:0,28,3:0:0:28,3:983,108:-89.1668,-9.17208,-0.74324,-80.3537,0,-79.4506	1/2:90:0,49,40:0:0:49,40:1727,1431:-257.394,-116.793,-102.043,-140.703,0,-128.662	1/1:155:0,155,0:0:0:155,0:5460,0:-491.444,-46.6597,0,-491.444,-46.6597,-491.444	1/2:222:0,112,109:0:0:112,109:3995,3899:-643.719,-318.05,-284.335,-325.785,0,-292.973	1/2:45:0,21,24:0:0:21,24:752,864:-132.184,-70.8578,-64.5362,-61.6849,0,-54.4602	1/1:224:0,223,1:0:0:223,1:7910,36:-711.574,-67.1297,0,-708.637,-63.8324,-708.336	1/2:103:0,62,39:0:0:62,39:2187,1400:-292.373,-114.295,-95.6316,-178.169,0,-166.429	1/1:78:0,78,0:0:0:78,0:2764,0:-249.002,-23.4803,0,-249.002,-23.4803,-249.002	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:22:0,13,9:0:0:13,9:460,324:-64.2612,-26.7966,-22.8832,-37.8219,0,-35.1126	1/1:4:0,4,0:0:0:4,0:141,0:-13.037,-1.20412,0,-13.037,-1.20412,-13.037	1/1:13:0,13,0:0:0:13,0:463,0:-42.0073,-3.91339,0,-42.0073,-3.91339,-42.0073	1/2:29:0,10,19:0:0:10,19:353,671:-83.7416,-54.9962,-51.9859,-29.0983,0,-23.3787	1/1:205:0,204,0:0:0:204,0:7222,0:-649.788,-61.4101,0,-649.788,-61.4101,-649.788	1/2:95:0,42,53:0:0:42,53:1466,1904:-274.919,-155.683,-143.04,-119.59,0,-103.635	1/2:70:0,34,36:0:0:34,36:1196,1296:-203.461,-106.107,-95.8718,-97.7096,0,-86.8725	1/2:8:0,2,6:0:0:2,6:71,216:-23.7682,-17.9843,-17.3823,-6.14,0,-4.33382	1/1:93:0,89,4:0:0:89,4:3153,144:-283.637,-26.7917,0,-271.887,-14.6822,-270.683	1/2:30:0,14,16:0:0:14,16:489,576:-87.1299,-47.3585,-43.1441,-40.1255,0,-35.309	1/2:126:0,58,68:0:0:58,68:2074,2427:-367.329,-198.215,-180.756,-169.471,0,-149.001	1/2:66:0,26,40:0:0:26,40:920,1431:-191.98,-117.046,-109.219,-75.2899,0,-63.2487	1/1:42:0,42,0:0:0:42,0:1474,0:-132.953,-12.6433,0,-132.953,-12.6433,-132.953	1/2:113:0,50,62:0:0:50,62:1762,2232:-325.713,-182.257,-167.206,-143.587,0,-124.923	1/1:119:0,119,0:0:0:119,0:4192,0:-377.465,-35.8226,0,-377.465,-35.8226,-377.465	1/1:105:0,105,0:0:0:105,0:3723,0:-335.274,-31.6082,0,-335.274,-31.6082,-335.274	1/2:102:0,36,66:0:0:36,66:1279,2341:-295.301,-191.08,-180.243,-104.576,0,-84.7078	1/2:132:0,64,67:0:0:64,67:2256,2393:-378.838,-195.166,-175.901,-183.736,0,-163.567	1/2:127:0,43,84:0:0:43,84:1532,3024:-371.973,-247.103,-234.159,-125.228,0,-99.9413	1/2:16:0,3,13:0:0:3,13:108,468:-47.3585,-38.5463,-37.6432,-9.17208,0,-5.25869	1/2:78:0,35,43:0:0:35,43:1246,1544:-227.86,-126.309,-115.773,-101.909,0,-88.9643	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/1:9:0,9,0:0:0:9,0:316,0:-28.7785,-2.70927,0,-28.7785,-2.70927,-28.7785	1/1:132:0,132,0:0:0:132,0:4665,0:-420.017,-39.736,0,-420.017,-39.736,-420.017	1/2:43:0,20,21:0:0:20,21:707,752:-118.9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chr10	6385996	.	G	A	61350.4	PASS	AB=0.414589;ABP=612.831;AC=92;AF=0.489362;AN=188;AO=3990;CIGAR=1X;DP=9635;DPB=9635;DPRA=19.0198;EPP=8667.19;EPPR=12213.2;GTI=5;LEN=1;MEANALT=1.06522;MQM=59.99;MQMR=59.9966;NS=94;NUMALT=1;ODDS=0.744787;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=141920;QR=201233;RO=5639;RPL=0;RPP=8667.19;RPPR=12230.6;RPR=3990;RUN=1;SAF=3990;SAP=8667.19;SAR=0;SRF=5637;SRP=12230.6;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:18,3:18:636:3:108:-3.75354,0,-51.2464	0/1:113:58,55:58:2076:55:1959:-142.568,0,-153.094	0/1:50:14,36:14:492:36:1251:-97.8397,0,-29.5608	0/1:210:174,36:174:6221:36:1276:-51.9268,0,-496.769	0/1:77:54,23:54:1931:23:816:-50.5824,0,-150.887	0/1:61:47,14:47:1676:14:500:-26.9733,0,-132.764	0/1:100:65,35:65:2328:35:1217:-79.7283,0,-179.677	0/1:171:90,81:90:3221:81:2886:-208.501,0,-238.634	0/1:61:42,19:42:1475:19:668:-42.0823,0,-114.681	0/1:143:103,40:103:3643:40:1424:-85.4102,0,-285.026	0/1:106:57,49:57:2024:49:1760:-126.775,0,-150.524	0/1:159:119,40:119:4245:40:1425:-80.6817,0,-334.365	0/1:83:26,57:26:936:57:2042:-159.067,0,-59.574	0/1:116:30,86:30:1046:86:3076:-242.149,0,-59.5264	0/1:73:20,53:20:716:53:1891:-148.492,0,-42.7925	0/1:83:43,40:43:1532:40:1421:-103.2,0,-113.188	0/1:93:31,62:31:1116:62:2221:-171.721,0,-72.7559	0/1:117:51,65:51:1828:65:2324:-174.141,0,-129.522	0/1:59:48,11:48:1715:11:396:-18.222,0,-136.874	0/1:135:94,41:94:3357:41:1460:-91.057,0,-261.706	0/1:102:69,33:69:2453:33:1165:-74.4499,0,-190.318	0/1:28:7,21:7:248:21:742:-58.6751,0,-14.2354	0/1:69:26,42:26:936:42:1478:-112.481,0,-63.7296	0/1:194:107,87:107:3836:87:3116:-222.267,0,-287.036	0/1:34:27,7:27:964:7:252:-12.7939,0,-76.8418	0/1:286:151,135:151:5404:135:4794:-345.522,0,-400.396	0/1:182:138,44:138:4944:44:1541:-84.1923,0,-390.322	0/1:53:28,24:28:1004:24:856:-61.3479,0,-74.6625	0/1:128:47,81:47:1688:81:2869:-219.915,0,-113.675	0/1:68:54,14:54:1936:14:504:-25.2281,0,-154.046	0/1:181:96,85:96:3429:85:3006:-216.284,0,-254.266	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:19:13,5:13:456:5:180:-10.7737,0,-35.5955	0/1:356:188,168:188:6701:168:5986:-431.681,0,-495.999	0/1:103:84,19:84:3012:19:665:-29.1667,0,-240.305	0/1:123:90,33:90:3220:33:1180:-69.4814,0,-252.996	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:179:71,108:71:2552:108:3837:-291.643,0,-176.046	0/1:58:48,10:48:1728:10:360:-15.2846,0,-138.346	0/1:144:103,41:103:3677:41:1464:-88.7077,0,-287.784	0/1:160:105,55:105:3751:55:1957:-128.239,0,-289.625	0/1:135:72,63:72:2572:63:2227:-160.054,0,-191.091	0/1:118:80,38:80:2868:38:1356:-86.8189,0,-222.835	0/1:87:25,62:25:900:62:2197:-171.805,0,-55.1314	0/1:114:27,87:27:960:87:3082:-243.293,0,-52.3989	0/1:64:53,11:53:1900:11:388:-15.9914,0,-152.012	0/1:183:130,53:130:4629:53:1880:-114.39,0,-361.685	0/1:143:118,25:118:4202:25:877:-36.1979,0,-335.312	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:66:45,21:45:1608:21:746:-47.5959,0,-125.142	0/1:46:24,22:24:856:22:756:-54.5085,0,-63.5137	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:75:30,45:30:1072:45:1600:-121.713,0,-74.2152	0/1:77:60,17:60:2117:17:612:-32.2341,0,-167.616	0/1:10:2,8:2:72:8:280:-22.529,0,-3.82642	0/1:20:15,5:15:536:5:176:-10.1644,0,-42.5542	0/1:97:79,18:79:2840:18:636:-28.3668,0,-226.638	0/1:144:45,99:45:1604:99:3548:-276.18,0,-101.302	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:133:73,60:73:2609:60:2126:-151.572,0,-195.019	0/1:104:39,65:39:1376:65:2304:-176.315,0,-92.8288	0/1:48:29,19:29:1032:19:676:-46.7186,0,-78.744	0/1:29:8,21:8:284:21:730:-57.2908,0,-17.1735	0/1:359:285,74:285:10106:74:2652:-130.856,0,-801.406	0/1:32:14,18:14:500:18:640:-48.2964,0,-35.7032	0/1:34:15,19:15:540:19:676:-50.933,0,-38.7015	0/1:64:42,22:42:1504:22:784:-51.618,0,-116.389	0/1:120:45,75:45:1620:75:2677:-205.05,0,-109.966	0/1:23:5,18:5:180:18:644:-51.3669,0,-9.62837	0/1:88:42,46:42:1485:46:1644:-121.758,0,-107.452	0/1:61:32,29:32:1148:29:1027:-74.3793,0,-85.267	0/1:226:117,109:117:4176:109:3857:-279.295,0,-307.988	0/1:152:85,67:85:3026:67:2372:-167.983,0,-226.811	0/1:110:74,36:74:2626:36:1284:-82.7501,0,-203.471	0/1:219:177,41:177:6296:41:1468:-66.4318,0,-500.746	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:132:62,70:62:2220:70:2500:-185.517,0,-160.328	0/1:88:62,26:62:2216:26:920:-56.6264,0,-173.214	0/1:256:131,125:131:4666:125:4439:-322.621,0,-343.039	0/1:122:51,71:51:1813:71:2544:-192.485,0,-126.724	0/1:65:21,43:21:737:43:1528:-118.226,0,-47.0634	0/1:155:71,84:71:2548:84:3008:-224.292,0,-182.911	0/1:194:132,62:132:4698:62:2205:-140.314,0,-364.58	0/1:49:10,39:10:360:39:1388:-110.468,0,-17.9938	0/1:133:107,26:107:3835:26:932:-44.1619,0,-305.308	0/1:97:73,24:73:2608:24:841:-46.8065,0,-205.769	0/1:56:44,12:44:1576:12:432:-22.3635,0,-125.274	0/1:81:55,26:55:1953:26:928:-59.4548,0,-151.66	0/1:104:73,31:73:2620:31:1112:-69.0842,0,-204.74	0/1:128:68,60:68:2409:60:2144:-154.696,0,-178.534	0/1:214:112,102:112:3993:102:3636:-263.026,0,-295.139
chr10	6387833	.	T	A	69067	PASS	AB=0.38667;ABP=1335.36;AC=92;AF=0.489362;AN=188;AO=4618;CIGAR=1X;DP=11951;DPB=11951;DPRA=32.4538;EPP=10022.2;EPPR=15919.9;GTI=8;LEN=1;MEANALT=1.03261;MQM=59.942;MQMR=59.9799;NS=94;NUMALT=1;ODDS=2.7578;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164833;QR=261086;RO=7330;RPL=2;RPP=10013.5;RPPR=15911.2;RPR=4616;RUN=1;SAF=1;SAP=10022.2;SAR=4617;SRF=1;SRP=15911.2;SRR=7329;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:42,30:42:1508:30:1080:-75.8391,0,-114.34	0/1:89:46,43:46:1641:43:1540:-112.101,0,-120.558	0/1:205:133,72:133:4746:72:2584:-171.098,0,-365.585	0/1:358:180,178:180:6431:178:6368:-464.949,0,-471.104	0/1:157:87,70:87:3097:70:2508:-178.711,0,-231.695	0/1:48:23,25:23:824:25:885:-65.5179,0,-60.0339	0/1:63:47,16:47:1688:16:576:-33.2101,0,-133.242	0/1:295:188,107:188:6679:107:3825:-255.64,0,-512.384	0/1:92:76,16:76:2716:16:568:-23.7571,0,-216.989	0/1:104:62,42:62:2220:42:1512:-105.067,0,-168.757	0/1:79:49,30:49:1752:30:1065:-72.3784,0,-134.183	0/1:174:80,94:80:2876:94:3360:-250.238,0,-206.697	0/1:86:60,26:60:2148:26:915:-56.7755,0,-167.699	0/1:70:54,16:54:1919:16:555:-29.2039,0,-151.914	0/1:75:52,23:52:1849:23:815:-51.0935,0,-144.111	0/1:90:45,45:45:1601:45:1616:-118.634,0,-117.285	0/1:47:32,15:32:1124:15:536:-34.4264,0,-87.3195	0/1:45:21,24:21:756:24:860:-63.6839,0,-54.8209	0/1:37:23,14:23:809:14:504:-34.56,0,-61.9902	0/1:167:120,47:120:4270:47:1688:-101.935,0,-334.205	0/1:181:135,46:135:4803:46:1640:-93.4009,0,-377.937	0/1:304:231,73:231:8168:73:2601:-142.823,0,-643.62	0/1:101:75,26:75:2661:26:936:-54.1554,0,-209.331	0/1:157:83,74:83:2961:74:2645:-191.033,0,-219.46	0/1:118:62,56:62:2179:56:1985:-143.4,0,-160.85	0/1:488:242,246:242:8665:246:8840:-648.645,0,-632.936	0/1:416:222,194:222:7937:194:6925:-498.086,0,-589.122	0/1:28:19,9:19:684:9:324:-21.077,0,-53.4569	0/1:266:173,93:173:6166:93:3335:-220.279,0,-474.964	0/1:122:77,44:77:2751:44:1571:-104.852,0,-211.047	0/1:131:79,52:79:2794:52:1845:-126.893,0,-212.264	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:24:12,12:12:424:12:428:-31.6341,0,-31.2717	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:299:148,151:148:5297:151:5375:-393.874,0,-386.855	0/1:222:117,105:117:4144:105:3731:-269.161,0,-306.312	0/1:78:40,38:40:1420:38:1360:-99.2203,0,-104.617	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:131:92,39:92:3292:39:1390:-85.9631,0,-257.065	0/1:34:19,15:19:684:15:540:-38.7015,0,-51.6553	0/1:267:193,74:193:6864:74:2643:-157.738,0,-537.452	0/1:43:28,15:28:1008:15:540:-35.9922,0,-78.0921	0/1:93:41,52:41:1476:52:1864:-140.044,0,-105.14	0/1:148:76,72:76:2698:72:2569:-186.906,0,-198.506	0/1:127:94,33:94:3363:33:1188:-68.9978,0,-264.655	0/1:287:199,88:199:7027:88:3117:-194.314,0,-544.908	0/1:169:92,77:92:3296:77:2764:-198.127,0,-245.985	0/1:147:103,44:103:3669:44:1569:-97.2482,0,-286.162	0/1:220:106,114:106:3766:114:4014:-295.221,0,-272.912	0/1:16:13,3:13:468:3:99:-4.4201,0,-37.6432	0/1:184:132,52:132:4737:52:1853:-111.659,0,-371.096	0/1:82:44,38:44:1554:38:1356:-97.6521,0,-115.463	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	0/1:132:98,34:98:3501:34:1224:-70.7311,0,-275.563	0/1:70:42,28:42:1489:28:1004:-69.6038,0,-113.23	0/1:8:4,4:4:144:4:128:-9.42806,0,-10.9054	0/1:32:18,14:18:629:14:504:-36.0651,0,-47.3008	0/1:164:85,79:85:3056:79:2844:-206.828,0,-225.899	0/1:124:91,33:91:3249:33:1184:-69.5406,0,-255.302	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:174:122,52:122:4324:52:1857:-115.02,0,-336.848	0/1:239:174,65:174:6181:65:2336:-138.553,0,-484.438	0/1:67:50,17:50:1751:17:608:-34.883,0,-137.699	0/1:114:85,29:85:3037:29:1031:-58.7852,0,-239.241	0/1:253:171,82:171:6052:82:2909:-185.882,0,-468.518	0/1:129:111,18:111:3988:18:648:-19.819,0,-320.276	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	0/1:80:63,17:63:2260:17:597:-29.9746,0,-179.58	0/1:46:31,15:31:1097:15:526:-33.8206,0,-85.1906	0/1:31:24,6:24:860:6:207:-9.57831,0,-68.3312	0/1:304:161,143:161:5758:143:5098:-367.44,0,-426.819	0/1:98:49,49:49:1756:49:1760:-129.183,0,-128.823	0/1:250:139,111:139:4927:111:3984:-282.636,0,-368.323	0/1:189:100,89:100:3543:89:3177:-229.258,0,-262.182	0/1:202:152,49:152:5376:49:1760:-97.8561,0,-423.145	0/1:133:72,61:72:2580:61:2178:-156.249,0,-192.412	0/1:9:5,4:5:165:4:144:-10.6043,0,-12.4643	0/1:112:70,42:70:2497:42:1502:-101.759,0,-191.266	0/1:144:98,46:98:3452:46:1633:-103.821,0,-267.541	0/1:387:235,152:235:8387:152:5401:-369.722,0,-638.334	0/1:84:52,32:52:1868:32:1140:-77.6227,0,-143.113	0/1:83:53,30:53:1900:30:1067:-71.3542,0,-146.292	0/1:66:39,27:39:1385:27:953:-66.2159,0,-105.079	0/1:163:104,59:104:3713:59:2051:-135.789,0,-285.274	0/1:32:23,9:23:824:9:320:-19.5094,0,-64.8504	0/1:134:57,77:57:2021:77:2760:-208.304,0,-141.823	0/1:97:53,44:53:1889:44:1568:-112.212,0,-141.086	0/1:59:33,26:33:1165:26:936:-66.7987,0,-87.3942	0/1:119:81,38:81:2885:38:1364:-87.2381,0,-224.063	0/1:64:42,22:42:1504:22:773:-50.6244,0,-116.389	0/1:120:62,58:62:2198:58:2059:-149.457,0,-161.958	0/1:130:71,59:71:2529:59:2111:-151.124,0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chr10	6387850	.	T	C	20729.8	PASS	AB=0.29106;ABP=2191.69;AC=47;AF=0.25;AN=188;AO=1697;CIGAR=1X;DP=12184;DPB=12184;DPRA=1.28168;EPP=3440.41;EPPR=20551.6;GTI=6;LEN=1;MEANALT=1.05769;MQM=59.9529;MQMR=59.9695;NS=94;NUMALT=1;ODDS=0.241679;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60469;QR=375466;RO=10481;RPL=1668;RPP=3440.41;RPPR=20559.9;RPR=29;RUN=1;SAF=0;SAP=3688;SAR=1697;SRF=1;SRP=22753.5;SRR=10480;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:54,21:54:1940:21:756:-45.79,0,-152.299	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/0:210:210,0:210:7525:0:0:0,-63.2163,-677.288	0/1:361:265,96:265:9485:96:3419:-199.248,0,-744.446	0/1:158:114,44:114:4076:44:1546:-91.865,0,-319.464	0/1:49:40,9:40:1436:9:324:-14.7554,0,-114.787	0/1:66:45,21:45:1616:21:737:-46.7826,0,-125.862	0/0:300:300,0:300:10748:0:0:0,-90.309,-967.223	0/1:92:58,34:58:2072:34:1213:-81.7805,0,-159.056	0/1:110:91,18:91:3245:18:614:-22.4058,0,-259.098	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/1:175:139,36:139:4992:36:1286:-63.3634,0,-396.746	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.814	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.692	0/0:53:52,1:52:1868:1:36:0,-12.3563,-164.801	0/0:47:47,0:47:1688:0:0:0,-14.1484,-151.716	0/1:37:27,10:27:968:10:360:-21.6062,0,-76.2993	0/1:168:109,59:109:3908:59:2105:-139.144,0,-301.34	0/1:183:122,61:122:4384:61:2165:-140.027,0,-339.643	0/0:308:307,1:307:11024:1:36:0,-89.119,-988.449	0/0:104:104,0:104:3705:0:0:0,-31.3071,-333.652	0/0:159:153,5:153:5469:5:180:0,-31.2456,-475.809	0/1:119:95,24:95:3389:24:860:-41.8993,0,-269.396	0/0:492:489,3:489:17517:3:108:0,-138.032,-1566.04	0/1:432:321,111:321:11489:111:3965:-226.992,0,-903.838	0/1:29:20,9:20:716:9:320:-20.4106,0,-56.0378	0/0:271:271,0:271:9664:0:0:0,-81.5791,-869.695	0/1:125:84,41:84:3004:41:1452:-93.3444,0,-232.963	0/0:134:134,0:134:4796:0:0:0,-40.338,-431.796	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/1:24:16,8:16:576:8:288:-19.0427,0,-44.9503	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/0:307:306,0:306:10976:0:0:0,-92.1152,-987.373	0/1:223:170,53:170:6100:53:1864:-100.907,0,-481.97	0/1:80:58,22:58:2080:22:788:-47.1624,0,-163.388	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:134:134,0:134:4797:0:0:0,-40.338,-431.884	0/1:34:24,10:24:860:10:356:-22.1462,0,-67.4868	0/1:274:188,85:188:6728:85:3048:-192.008,0,-523.054	0/1:42:31,11:31:1116:11:396:-23.3395,0,-88.1084	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/1:151:115,36:115:4116:36:1296:-71.4884,0,-325.16	0/0:129:129,0:129:4636:0:0:0,-38.8329,-417.401	0/0:296:292,4:292:10445:4:144:0,-75.7913,-925.466	0/1:173:126,47:126:4500:47:1692:-100.402,0,-353.092	0/1:146:99,47:99:3552:47:1680:-107.537,0,-275.937	0/1:223:173,50:173:6196:50:1792:-94.4328,0,-490.607	0/1:18:7,11:7:237:11:396:-30.5642,0,-16.2405	0/1:188:124,64:124:4429:64:2262:-147.246,0,-342.187	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.752	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.472	0/1:72:45,27:45:1620:27:972:-66.1237,0,-124.416	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:31:22,9:22:792:9:324:-20.1739,0,-62.2737	0/1:166:129,37:129:4624:37:1328:-69.8513,0,-366.352	0/0:126:126,0:126:4528:0:0:0,-37.9298,-407.685	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1321	0/1:178:117,61:117:4196:61:2178:-142.703,0,-324.086	0/0:240:239,0:239:8572:0:0:0,-71.9462,-771.115	0/1:68:50,18:50:1792:18:648:-38.1818,0,-141.092	0/0:120:120,0:120:4280:0:0:0,-36.1236,-385.379	0/1:258:167,91:167:5988:91:3245:-214.559,0,-461.359	0/0:132:132,0:132:4725:0:0:0,-39.736,-425.407	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:80:46,34:46:1644:34:1209:-85.0317,0,-124.166	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.788	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:309:308,0:308:11006:0:0:0,-92.7172,-990.065	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/0:253:253,0:253:9037:0:0:0,-76.1606,-812.454	0/0:191:191,0:191:6810:0:0:0,-57.4967,-612.971	0/1:210:126,84:126:4513:84:2999:-206.925,0,-343.119	0/1:132:96,36:96:3456:36:1292:-76.8478,0,-271.515	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:117:117,0:117:4208:0:0:0,-35.2205,-378.899	0/1:148:99,49:99:3560:49:1749:-113.141,0,-275.498	0/0:393:391,2:391:14024:2:68:0,-111.847,-1255.47	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.79	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:163:113,50:113:4052:50:1770:-110.512,0,-315.799	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:136:107,29:107:3848:29:1014:-50.6274,0,-305.574	0/1:102:75,27:75:2688:27:964:-56.3718,0,-211.46	0/1:60:44,16:44:1580:16:576:-34.1132,0,-124.43	0/1:122:85,37:85:3052:37:1297:-80.3023,0,-238.183	0/1:65:32,33:32:1140:33:1172:-86.2205,0,-83.3423	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/0:133:133,0:133:4768:0:0:0,-40.037,-429.277
chr10	6389992	.	CCTCA	TCTCG,CCTCG	256127	PASS	AB=0.374155,0.620928;ABP=1793.47,1656.29;AC=95,93;AF=0.505319,0.494681;AN=188;AO=4872,8082;CIGAR=1X3M1X,4M1X;DP=13018;DPB=13022;DPRA=0,69.9785;EPP=10582.4,17552.9;EPPR=9.52472;GTI=1;LEN=5,1;MEANALT=2.59574,2.6129;MQM=59.9791,58.4005;MQMR=60;NS=94;NUMALT=2;ODDS=64.3924;PAIRED=0,0;PAIREDR=0;PAO=10,10;PQA=340.5,340.5;PQR=0;PRO=0;QA=172388,288762;QR=107;RO=3;RPL=0,0;RPP=10582.4,17552.9;RPPR=9.52472;RPR=4872,8082;RUN=1,1;SAF=4872,8082;SAP=10582.4,17552.9;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:18:0,3,15:0:0:3,15:107,540:-52.8081,-44.0857,-43.1826,-9.07908,0,-4.56363	1/2:197:0,72,124:0:0:72,124:2541,4418:-567.038,-360.125,-338.451,-206.966,0,-169.638	1/2:152:0,95,57:0:0:95,57:3355,2029:-438.935,-165.722,-137.124,-273.568,0,-256.41	1/2:439:0,90,346:0:0:90,346:3190,12362:-1266.21,-1006.33,-979.234,-259.912,0,-155.756	1/2:93:0,14,79:0:0:14,79:487,2791:-266.025,-226.429,-222.215,-39.944,0,-16.1626	1/2:89:0,12,77:0:0:12,77:422,2752:-258.873,-224.523,-220.911,-34.7028,0,-11.5235	1/2:216:0,61,150:0:0:61,150:2159,5353:-611.967,-436.106,-417.743,-175.892,0,-130.738	1/2:252:0,89,163:0:0:89,163:3157,5845:-734.3,-477.091,-450.299,-257.565,0,-208.497	1/2:113:0,48,64:0:0:48,64:1650,2274:-318.359,-184.374,-169.924,-133.99,0,-114.724	1/2:143:0,31,111:0:0:31,111:1106,3988:-415.395,-325.233,-315.901,-90.1592,0,-56.7449	1/2:71:0,36,34:0:0:36,34:1232,1224:-199.861,-99.8722,-89.0351,-99.9802,0,-89.7452	1/2:140:0,32,108:0:0:32,108:1134,3857:-406.608,-314.228,-304.595,-92.7348,0,-60.2235	1/2:90:0,61,28:0:0:61,28:2181,1008:-260.081,-82.2477,-63.8849,-177.833,0,-169.404	1/2:85:0,58,27:0:0:58,27:2052,959:-245.634,-78.4976,-61.0378,-167.491,0,-159.363	1/2:94:0,67,27:0:0:67,27:2387,971:-274.141,-79.58,-59.411,-194.919,0,-186.792	1/2:91:0,44,46:0:0:44,46:1556,1656:-261.85,-135.121,-121.876,-126.726,0,-112.878	1/2:93:0,61,32:0:0:61,32:2169,1148:-270.753,-93.9969,-75.634,-177.114,0,-167.481	1/2:92:0,48,44:0:0:48,44:1709,1580:-268.535,-129.246,-114.797,-139.646,0,-126.401	1/2:55:0,14,41:0:0:14,41:494,1472:-160.403,-120.178,-115.964,-40.5789,0,-28.2366	1/2:209:0,41,166:0:0:41,166:1438,5945:-601.535,-484.513,-472.171,-117.006,0,-67.0346	1/2:180:0,41,139:0:0:41,139:1446,4973:-522.852,-405.113,-392.771,-118.093,0,-76.25	1/2:145:0,95,48:0:0:95,48:3348,1720:-412.867,-140.281,-111.683,-272.587,0,-258.138	1/2:81:0,61,20:0:0:61,20:2157,720:-234.785,-59.1082,-40.7453,-176.035,0,-170.014	1/2:87:0,37,49:0:0:37,49:1314,1756:-250.329,-143.262,-132.124,-107.139,0,-92.388	1/2:152:0,36,115:0:0:36,115:1281,4117:-440.004,-335.604,-324.766,-104.397,0,-69.7784	1/2:576:0,250,326:0:0:250,326:8887,11672:-1676.29,-952.087,-876.83,-724.435,0,-626.299	1/2:280:0,55,225:0:0:55,225:1959,8010:-812.24,-652.567,-636.01,-159.97,0,-92.2385	1/2:53:0,14,39:0:0:14,39:497,1388:-153.858,-113.363,-109.149,-40.8502,0,-29.11	1/2:195:0,118,74:0:0:118,74:4164,2648:-554.998,-215.93,-180.408,-339.064,0,-316.788	1/2:189:0,47,141:0:0:47,141:1680,5041:-547.533,-410.551,-396.403,-136.999,0,-94.5533	1/2:160:0,79,81:0:0:79,81:2793,2875:-462.078,-234.603,-210.822,-227.829,0,-203.446	1/2:11:0,2,9:0:0:2,9:72,320:-32.2994,-26.4238,-25.8217,-6.23466,0,-3.52539	1/2:31:0,5,25:0:0:5,25:180,900:-88.1109,-73.4237,-71.9185,-14.6969,0,-7.17114	1/2:6:0,1,5:0:0:1,5:36,180:-17.9843,-15.0469,-14.7459,-3.29724,0,-1.79209	1/2:9:0,2,7:0:0:2,7:72,252:-26.7966,-20.9217,-20.3197,-6.23466,0,-4.12745	1/2:12:0,2,10:0:0:2,10:72,360:-35.6006,-29.7258,-29.1237,-6.23466,0,-3.22436	1/2:395:0,198,196:0:0:198,196:7079,7018:-1149.53,-572.318,-512.714,-577.208,0,-518.206	1/2:406:0,89,316:0:0:89,316:3144,11256:-1172.51,-916.467,-889.675,-255.917,0,-160.792	1/2:133:0,37,96:0:0:37,96:1294,3418:-383.219,-277.976,-266.838,-105.593,0,-76.6944	1/2:8:0,1,7:0:0:1,7:36,252:-23.8592,-20.9217,-20.6207,-3.29724,0,-1.19003	1/2:184:0,110,72:0:0:110,72:3861,2580:-524.124,-210.459,-177.346,-313.713,0,-292.039	1/2:62:0,15,47:0:0:15,47:531,1670:-179.504,-136.251,-131.735,-43.607,0,-29.4586	1/2:153:0,38,115:0:0:38,115:1339,4116:-444.601,-335.586,-324.147,-109.368,0,-74.7496	1/2:90:0,31,58:0:0:31,58:1092,2063:-256.908,-168.003,-158.671,-89.0242,0,-71.5645	1/2:143:0,77,66:0:0:77,66:2727,2354:-414.389,-192.25,-169.07,-222.495,0,-202.627	1/2:227:0,51,175:0:0:51,175:1811,6237:-655.792,-508.228,-492.876,-147.564,0,-94.884	1/2:110:0,61,47:0:0:61,47:2147,1688:-312.462,-137.684,-119.321,-174.76,0,-160.612	1/2:200:0,119,79:0:0:119,79:4155,2828:-568.638,-230.676,-194.854,-338.015,0,-314.234	1/2:248:0,27,220:0:0:27,220:962,7834:-716.159,-637.746,-629.618,-78.4572,0,-12.2306	1/2:219:0,43,174:0:0:43,174:1541,6190:-629.653,-503.971,-491.027,-125.718,0,-73.3386	1/2:281:0,45,235:0:0:45,235:1580,8385:-811.815,-683.224,-669.678,-128.583,0,-57.8414	1/2:11:0,2,9:0:0:2,9:72,320:-32.3007,-26.425,-25.823,-6.23466,0,-3.52539	1/2:208:0,54,152:0:0:54,152:1903,5448:-598.678,-443.74,-427.484,-154.932,0,-109.175	1/2:79:0,23,54:0:0:23,54:823,1932:-224.707,-157.594,-150.67,-67.1605,0,-50.9049	1/2:16:0,12,4:0:0:12,4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chr10	6390022	.	C	G	41347.8	PASS	AB=0.327791;ABP=1691.75;AC=45;AF=0.239362;AN=188;AO=2167;CIGAR=1X;DP=12937;DPB=12937;DPRA=1.23116;EPP=5.61667;EPPR=22522.4;GTI=5;LEN=1;MEANALT=1.12727;MQM=53.9935;MQMR=59.9664;NS=94;NUMALT=1;ODDS=1.87563;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77286;QR=380597;RO=10759;RPL=1109;RPP=5.61667;RPPR=22522.4;RPR=1058;RUN=1;SAF=2167;SAP=4708.59;SAR=0;SRF=10759;SRP=23365.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:5,13:5:180:13:468:-36.7116,0,-11.1335	0/0:195:194,1:194:6897:1:36:0,-55.1116,-617.213	0/0:148:148,0:148:5246:0:0:0,-44.5524,-471.792	0/1:434:312,122:312:11020:122:4360:-261.474,0,-861.056	0/1:96:59,36:59:2065:36:1292:-86.5983,0,-157.16	0/1:85:58,27:58:2054:27:972:-61.9896,0,-159.543	0/1:212:133,79:133:4741:79:2784:-186.418,0,-362.175	0/0:245:245,0:245:8667:0:0:0,-73.7523,-780.032	0/1:111:78,33:78:2771:33:1176:-71.435,0,-216.218	0/1:143:101,42:101:3594:42:1486:-90.892,0,-280.62	0/0:73:73,0:73:2591:0:0:0,-21.9752,-233.439	0/1:141:107,34:107:3770:34:1203:-65.7321,0,-297.053	0/0:93:93,0:93:3293:0:0:0,-27.9958,-296.588	0/0:82:82,0:82:2886:0:0:0,-24.6845,-259.976	0/0:95:95,0:95:3328:0:0:0,-28.5978,-299.739	0/0:89:89,0:89:3099:0:0:0,-26.7917,-279.138	0/0:92:92,0:92:3255:0:0:0,-27.6948,-293.171	0/0:92:92,0:92:3238:0:0:0,-27.6948,-291.639	0/1:56:43,13:43:1511:13:457:-24.4912,0,-119.422	0/1:219:99,120:99:3492:120:4299:-320.661,0,-248.567	0/1:180:111,69:111:3958:69:2456:-166.358,0,-302.226	0/0:146:145,0:145:5129:0:0:0,-43.6493,-461.397	0/0:83:83,0:83:2917:0:0:0,-24.9855,-262.277	0/0:88:81,7:81:2900:7:252:0,-4.20025,-238.945	0/1:153:125,28:125:4414:28:1004:-44.3868,0,-351.377	0/0:572:571,1:571:20237:1:32:0,-168.99,-1817.66	0/1:274:213,61:213:7563:61:2183:-113.617,0,-597.863	0/1:53:36,17:36:1287:17:608:-38.9302,0,-100.178	0/0:195:194,1:194:6879:1:36:0,-55.1036,-615.587	0/1:191:121,70:121:4280:70:2495:-166.446,0,-327.694	0/0:154:154,0:154:5432:0:0:0,-46.3586,-489.017	0/1:11:9,2:9:311:2:72:-3.5157,0,-25.0124	0/1:31:25,6:25:900:6:216:-10.3274,0,-71.9891	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:12:11,1:11:392:1:36:0,-0.0231314,-32.0308	0/0:392:392,0:392:13814:0:0:0,-118.004,-1243.05	0/1:399:290,109:290:10320:109:3903:-230.359,0,-808.619	0/1:126:99,27:99:3479:27:972:-48.9046,0,-275.391	0/0:8:8,0:8:275:0:0:0,-2.40824,-25.0835	0/0:183:181,2:181:6395:2:72:0,-48.2615,-568.82	0/1:62:47,15:47:1599:15:536:-29.7335,0,-125.526	0/1:152:93,59:93:3282:59:2103:-143.453,0,-249.845	0/1:90:54,36:54:1880:36:1296:-89.0269,0,-142.381	0/0:146:146,0:146:5136:0:0:0,-43.9504,-462.387	0/1:222:168,53:168:5905:53:1879:-102.334,0,-464.681	0/0:108:108,0:108:3852:0:0:0,-32.5112,-346.877	0/0:199:199,0:199:7054:0:0:0,-59.905,-634.93	0/1:247:172,75:172:6087:75:2680:-166.25,0,-473.583	0/1:217:134,83:134:4758:83:2954:-200.174,0,-363.057	0/1:278:181,96:181:6432:96:3423:-224.147,0,-495.226	0/1:11:7,4:7:252:4:140:-9.62509,0,-19.7176	0/1:210:134,76:134:4748:76:2719:-181.134,0,-364.265	0/0:79:79,0:79:2805:0:0:0,-23.7814,-252.603	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:117:116,1:116:4088:1:36:0,-31.6222,-364.425	0/1:81:62,19:62:2212:19:667:-35.3689,0,-174.962	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/1:19:16,3:16:572:3:108:-4.3513,0,-46.0939	0/1:117:77,40:77:2739:40:1424:-92.9112,0,-211.532	0/0:173:173,0:173:6045:0:0:0,-52.0782,-544.16	0/1:4:3,1:3:104:1:36:-2.39156,0,-8.49869	0/1:322:180,141:180:6401:141:5023:-353.517,0,-479.172	0/0:156:154,2:154:5461:2:72:0,-40.1998,-484.862	0/1:66:49,17:49:1756:17:612:-35.3614,0,-138.456	0/0:78:78,0:78:2766:0:0:0,-23.4803,-249.182	0/1:311:221,90:221:7885:90:3222:-195.913,0,-616.058	0/0:99:97,1:97:3463:1:36:0,-26.265,-308.286	0/0:36:34,1:34:1211:1:36:0,-7.30245,-105.702	0/1:118:65,53:65:2299:53:1896:-134.82,0,-171.65	0/0:109:109,0:109:3900:0:0:0,-32.8123,-351.194	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:187:187,0:187:6618:0:0:0,-56.2926,-595.706	0/0:131:130,0:130:4626:0:0:0,-39.1339,-416.205	0/0:209:209,0:209:7374:0:0:0,-62.9153,-663.697	0/0:245:245,0:245:8660:0:0:0,-73.7523,-779.405	0/1:107:58,49:58:2044:49:1760:-125.936,0,-152.02	0/1:132:90,41:90:3203:41:1467:-92.0556,0,-247.679	0/0:3:3,0:3:95:0:0:0,-0.90309,-8.86421	0/0:159:159,0:159:5634:0:0:0,-47.8638,-507.054	0/1:111:65,46:65:2312:46:1636:-113.176,0,-174.927	0/0:272:271,0:271:9558:0:0:0,-81.5791,-859.831	0/0:157:157,0:157:5592:0:0:0,-47.2617,-503.404	0/0:69:69,0:69:2442:0:0:0,-20.7711,-220.035	0/0:163:163,0:163:5724:0:0:0,-49.0679,-515.228	0/1:189:126,63:126:4434:63:2206:-141.042,0,-342.338	0/0:72:72,0:72:2531:0:0:0,-21.6742,-228.04	0/1:125:98,27:98:3458:27:964:-48.6782,0,-273.804	0/1:139:95,44:95:3333:44:1575:-99.4982,0,-258.343	0/1:66:51,15:51:1815:15:536:-28.5368,0,-143.763	0/1:140:94,46:94:3308:46:1611:-102.631,0,-255.794	0/1:87:38,49:38:1328:49:1763:-132.261,0,-93.5824	0/0:133:132,0:132:4636:0:0:0,-39.736,-417.047	0/0:173:173,0:173:6083:0:0:0,-52.0782,-547.575
chr10	6390029	.	C	G	96250.5	PASS	AB=0.458956;ABP=192.138;AC=94;AF=0.5;AN=188;AO=5932;CIGAR=1X;DP=12925;DPB=12925;DPRA=0;EPP=12875.5;EPPR=14945.8;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9725;MQMR=58.1292;NS=94;NUMALT=1;ODDS=106.905;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210542;QR=246927;RO=6989;RPL=5931;RPP=12875.5;RPPR=14945.8;RPR=1;RUN=1;SAF=5932;SAP=12884.2;SAR=0;SRF=6989;SRP=15179.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:16,3:16:564:3:108:-4.3556,0,-45.0608	0/1:195:72,123:72:2540:123:4392:-336.751,0,-170.141	0/1:152:94,58:94:3336:58:2045:-138.562,0,-254.701	0/1:434:213,221:213:7536:221:7826:-573.716,0,-546.027	0/1:95:51,44:51:1816:44:1576:-113.534,0,-133.804	0/1:88:39,49:39:1383:49:1745:-130.843,0,-98.0788	0/1:215:141,74:141:4959:74:2644:-173.485,0,-380.077	0/1:248:88,160:88:3143:160:5692:-437.742,0,-208.44	0/1:112:80,32:80:2763:32:1116:-67.0292,0,-214.202	0/1:138:70,68:70:2487:68:2422:-176.693,0,-182.454	0/1:75:41,34:41:1438:34:1207:-86.358,0,-107.137	0/1:142:67,75:67:2380:75:2639:-194.853,0,-171.27	0/1:94:66,28:66:2315:28:988:-60.9357,0,-180.312	0/1:81:55,26:55:1943:26:885:-55.5761,0,-150.759	0/1:92:67,25:67:2365:25:882:-52.0018,0,-185.413	0/1:87:41,46:41:1441:46:1630:-120.798,0,-103.794	0/1:89:57,32:57:2000:32:1143:-76.387,0,-153.48	0/1:91:47,44:47:1628:44:1531:-110.685,0,-119.409	0/1:55:28,27:28:988:27:972:-71.2413,0,-72.5857	0/1:221:160,61:160:5662:61:2162:-128.315,0,-442.677	0/1:183:115,68:115:4054:68:2426:-163.506,0,-309.215	0/1:144:94,50:94:3330:50:1777:-116.862,0,-256.571	0/1:83:63,20:63:2239:20:716:-39.7822,0,-176.517	0/1:89:43,46:43:1532:46:1618:-119.115,0,-110.655	0/1:150:61,89:61:2172:89:3150:-238.571,0,-150.379	0/1:569:246,323:246:8715:323:11540:-867.186,0,-613.063	0/1:280:118,162:118:4185:162:5736:-432.068,0,-291.847	0/1:53:31,22:31:1104:22:788:-55.2902,0,-83.5465	0/1:197:121,76:121:4309:76:2703:-184.212,0,-328.683	0/1:190:119,70:119:4208:70:2468:-165.117,0,-320.761	0/1:152:75,77:75:2663:77:2756:-202.525,0,-194.157	0/1:11:4,7:4:144:7:252:-19.7176,0,-9.99285	0/1:30:11,19:11:392:19:684:-52.8594,0,-26.4619	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:12:3,9:3:108:9:315:-25.0749,0,-6.45437	0/1:394:200,194:200:7031:194:6858:-498.688,0,-514.25	0/1:403:197,206:197:6977:206:7336:-538.974,0,-505.776	0/1:130:62,68:62:2146:68:2385:-175.771,0,-153.474	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:178:106,72:106:3743:72:2536:-174.906,0,-282.117	0/1:59:29,30:29:1040:30:1056:-77.5901,0,-75.9866	0/1:150:94,56:94:3343:56:1987:-133.949,0,-255.615	0/1:93:68,25:68:2370:25:860:-49.7159,0,-184.856	0/1:143:77,66:77:2722:66:2314:-165.472,0,-202.177	0/1:225:103,122:103:3621:122:4350:-323.944,0,-258.204	0/1:111:62,49:62:2184:49:1751:-124.459,0,-163.41	0/1:195:114,81:114:4020:81:2908:-203.254,0,-303.289	0/1:250:100,149:100:3531:149:5289:-400.839,0,-242.09	0/1:218:126,92:126:4512:92:3272:-229.076,0,-340.026	0/1:277:141,136:141:5033:136:4820:-350.57,0,-369.336	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4697	0/1:208:130,78:130:4610:78:2783:-188.096,0,-351.89	0/1:79:24,55:24:860:55:1968:-153.614,0,-53.9405	0/1:16:12,4:12:415:4:144:-8.49714,0,-32.8638	0/1:117:61,56:61:2148:56:1996:-144.693,0,-158.353	0/1:79:28,51:28:991:51:1828:-141.02,0,-65.6837	0/1:6:2,4:2:63:4:144:-11.5074,0,-4.17697	0/1:19:9,10:9:309:10:352:-26.2986,0,-22.4169	0/1:114:63,51:63:2235:51:1832:-130.843,0,-166.835	0/1:172:116,56:116:4031:56:1947:-123.723,0,-311.205	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.86863	0/1:323:207,116:207:7371:116:4076:-269.789,0,-564.509	0/1:154:94,60:94:3309:60:2131:-145.699,0,-251.598	0/1:65:36,29:36:1269:29:1036:-73.987,0,-94.7604	0/1:77:35,42:35:1243:42:1512:-113.195,0,-88.9946	0/1:318:164,154:164:5799:154:5507:-400.028,0,-425.636	0/1:99:75,24:75:2659:24:864:-48.2806,0,-209.752	0/1:34:30,4:30:1052:4:144:-3.0786,0,-84.7481	0/1:115:70,45:70:2477:45:1611:-110.662,0,-188.034	0/1:111:78,33:78:2734:33:1180:-73.0937,0,-212.885	0/1:36:18,18:18:601:18:631:-46.2786,0,-43.5675	0/1:190:96,94:96:3412:94:3319:-241.733,0,-250.098	0/1:129:48,81:48:1716:81:2889:-221.412,0,-115.893	0/1:201:114,87:114:4048:87:3079:-216.83,0,-304.001	0/1:248:99,149:99:3517:149:5312:-403.56,0,-242.085	0/1:111:70,41:70:2499:41:1463:-98.551,0,-191.204	0/1:135:81,53:81:2865:53:1908:-130.034,0,-216.794	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:160:65,95:65:2284:95:3376:-255.889,0,-157.383	0/1:106:69,37:69:2440:37:1320:-87.1928,0,-187.004	0/1:274:126,148:126:4456:148:5258:-390.877,0,-318.731	0/1:159:107,52:107:3760:52:1851:-119.005,0,-290.737	0/1:69:52,17:52:1845:17:612:-34.6424,0,-145.557	0/1:161:74,86:74:2561:86:3037:-225.033,0,-182.213	0/1:186:123,63:123:4314:63:2190:-141.37,0,-332.012	0/1:74:49,25:49:1698:25:892:-58.3235,0,-130.823	0/1:124:63,61:63:2228:61:2167:-157.969,0,-162.393	0/1:136:72,64:72:2539:64:2274:-163.981,0,-187.215	0/1:65:42,23:42:1468:23:828:-55.2772,0,-112.673	0/1:138:93,45:93:3263:45:1564:-99.5057,0,-251.837	0/1:86:61,25:61:2160:25:877:-53.3116,0,-168.308	0/1:129:53,76:53:1883:76:2683:-202.884,0,-130.909	0/1:170:89,81:89:3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chr10	6390127	.	A	G	26059.5	PASS	AB=0.320909;ABP=1707.13;AC=44;AF=0.234043;AN=188;AO=1991;CIGAR=1X;DP=12379;DPB=12379;DPRA=1.47348;EPP=4248.59;EPPR=22252.9;GTI=2;LEN=1;MEANALT=1.03448;MQM=59.9528;MQMR=59.9922;NS=94;NUMALT=1;ODDS=7.47011;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71055;QR=372145;RO=10386;RPL=1982;RPP=4248.59;RPPR=22261.6;RPR=9;RUN=1;SAF=0;SAP=4326.41;SAR=1991;SRF=1;SRP=22547.2;SRR=10385;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:23,24:23:824:24:849:-62.5803,0,-60.3349	0/0:229:228,1:228:8148:1:36:0,-65.3376,-729.736	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.369	0/1:300:236,64:236:8448:64:2287:-115.768,0,-670.011	0/1:157:110,47:110:3932:47:1679:-104.135,0,-306.811	0/1:58:31,27:31:1112:27:955:-68.8051,0,-82.9316	0/1:179:112,67:112:4006:67:2403:-162.641,0,-306.844	0/0:138:134,4:134:4804:4:144:0,-28.2285,-419.19	0/1:92:48,44:48:1728:44:1560:-112.926,0,-128.111	0/1:178:131,47:131:4696:47:1680:-97.9034,0,-369.216	0/0:110:110,0:110:3947:0:0:0,-33.1133,-355.42	0/1:126:86,40:86:3066:40:1431:-91.1571,0,-238.239	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.659	0/0:91:91,0:91:3267:0:0:0,-27.3937,-294.249	0/0:124:124,0:124:4443:0:0:0,-37.3277,-400.04	0/0:91:91,0:91:3239:0:0:0,-27.3937,-291.732	0/0:104:103,1:103:3692:1:36:0,-27.7088,-328.884	0/1:97:78,19:78:2804:19:684:-32.6904,0,-223.399	0/1:188:140,48:140:5032:48:1710:-97.5906,0,-396.43	0/1:131:77,54:77:2755:54:1914:-133.101,0,-208.756	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.27	0/0:113:112,1:112:4024:1:36:0,-30.4181,-358.749	0/1:119:93,25:93:3324:25:887:-44.2669,0,-263.497	0/0:469:466,3:466:16720:3:108:0,-131.108,-1494.37	0/1:186:110,76:110:3948:76:2728:-189.771,0,-299.519	0/1:45:27,18:27:972:18:644:-44.7442,0,-74.2516	0/0:258:257,1:257:9219:1:36:0,-74.0675,-826.078	0/1:231:140,91:140:4993:91:3256:-223.723,0,-379.979	0/0:155:155,0:155:5541:0:0:0,-46.6596,-498.814	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:387:387,0:387:13872:0:0:0,-116.499,-1248.25	0/1:246:168,78:168:6014:78:2784:-176.748,0,-467.31	0/1:140:103,37:103:3670:37:1332:-78.0348,0,-288.359	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:194:189,5:189:6780:5:180:0,-41.8478,-593.719	0/1:91:69,22:69:2469:22:774:-42.5865,0,-195.068	0/1:157:96,61:96:3439:61:2188:-149.924,0,-262.461	0/1:106:75,31:75:2696:31:1104:-67.7615,0,-210.975	0/0:115:115,0:115:4117:0:0:0,-34.6184,-370.713	0/1:148:97,51:97:3492:51:1824:-119.889,0,-269.937	0/0:131:131,0:131:4688:0:0:0,-39.4349,-422.081	0/0:178:177,1:177:6356:1:36:0,-49.9851,-568.53	0/1:304:227,77:227:8111:77:2748:-156.05,0,-638.492	0/1:199:134,65:134:4797:65:2328:-149.872,0,-371.979	0/1:312:228,84:228:8180:84:2976:-174.094,0,-642.29	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:175:104,71:104:3732:71:2548:-176.89,0,-283.4	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.714	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:155:155,0:155:5553:0:0:0,-46.6596,-499.822	0/1:120:66,54:66:2364:54:1907:-135.781,0,-176.895	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:19:15,4:15:540:4:140:-7.22501,0,-43.217	0/1:83:63,20:63:2260:20:716:-39.7822,0,-178.677	0/0:191:189,2:189:6779:2:72:0,-50.66,-603.343	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:275:191,84:191:6860:84:2984:-186.007,0,-534.683	0/0:191:191,0:191:6864:0:0:0,-57.4967,-617.825	0/1:100:52,47:52:1864:47:1684:-121.685,0,-137.878	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.987	0/1:232:193,39:193:6893:39:1396:-56.1001,0,-550.599	0/0:88:87,1:87:3128:1:36:0,-22.8924,-278.147	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:103:74,29:74:2647:29:1036:-62.5478,0,-207.47	0/0:134:134,0:134:4776:0:0:0,-40.338,-429.997	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/0:98:98,0:98:3496:0:0:0,-29.5009,-314.849	0/0:97:96,1:96:3444:1:36:0,-25.6016,-306.574	0/0:159:159,0:159:5684:0:0:0,-47.8638,-511.68	0/0:256:255,1:255:9145:1:36:0,-73.4654,-819.42	0/1:119:72,47:72:2588:47:1688:-116.384,0,-197.346	0/1:117:88,29:88:3151:29:1040:-58.6939,0,-248.594	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:132:128,4:128:4572:4:135:0,-27.2534,-399.164	0/1:105:62,43:62:2209:43:1548:-108.005,0,-167.465	0/0:365:365,0:365:13067:0:0:0,-109.876,-1175.82	0/0:182:182,0:182:6540:0:0:0,-54.7875,-588.666	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:134:134,0:134:4816:0:0:0,-40.338,-433.593	0/1:188:119,69:119:4267:69:2484:-167.219,0,-327.613	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:129:100,29:100:3581:29:1014:-52.7346,0,-283.662	0/1:142:98,44:98:3513:44:1566:-98.4839,0,-273.631	0/1:98:52,46:52:1872:46:1622:-116.765,0,-139.258	0/1:171:111,60:111:3979:60:2130:-140.491,0,-306.823	0/1:79:47,32:47:1688:32:1144:-79.4696,0,-128.426	0/0:146:144,2:144:5172:2:72:0,-37.1137,-458.782	0/0:191:191,0:191:6864:0:0:0,-57.4967,-617.825
chr10	6439267	.	C	T	169262	PASS	AB=0.483083;ABP=15.9406;AC=141;AF=0.75;AN=188;AO=8008;CIGAR=1X;DP=10715;DPB=10715;DPRA=0;EPP=17331.4;EPPR=1024.13;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9766;MQMR=59.7197;NS=94;NUMALT=1;ODDS=2.50469;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286387;QR=96404;RO=2701;RPL=8001;RPP=17331.4;RPPR=1024.13;RPR=7;RUN=1;SAF=8008;SAP=17392.2;SAR=0;SRF=2701;SRP=5868.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:21,21:21:748:21:756:-55.724,0,-55.002	1/1:78:0,78:0:0:78:2777:-250.17,-23.4803,0	1/1:218:0,218:0:0:218:7724:-695.193,-65.6245,0	0/1:335:174,161:174:6194:161:5780:-419.468,0,-456.605	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6173	0/1:18:8,10:8:288:10:348:-26.2366,0,-20.8489	0/1:70:42,28:42:1488:28:1008:-69.9643,0,-113.057	1/1:131:0,131:0:0:131:4639:-417.672,-39.4349,0	0/1:146:76,70:76:2719:70:2502:-181.479,0,-201.002	0/1:171:110,60:110:3916:60:2156:-142.772,0,-301.015	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	0/1:116:62,54:62:2220:54:1929:-138.966,0,-165.145	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	1/1:52:0,52:0:0:52:1844:-166.238,-15.6536,0	1/1:98:0,98:0:0:98:3513:-316.379,-29.5009,0	1/1:60:0,60:0:0:60:2141:-192.956,-18.0618,0	1/1:52:0,52:0:0:52:1860:-167.678,-15.6536,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:27:15,12:15:536:12:432:-31.0934,0,-40.447	0/1:305:200,105:200:7143:105:3757:-246.485,0,-551.001	0/1:289:126,163:126:4495:163:5816:-436.555,0,-317.654	1/1:58:0,58:0:0:58:2062:-185.847,-17.4597,0	1/1:158:2,156:2:72:156:5577:-495.216,-40.726,0	0/1:153:16,137:16:568:137:4920:-396.891,0,-5.39428	0/1:43:23,20:23:828:20:716:-51.8234,0,-61.8998	1/1:334:1,333:1:36:333:11920:-1069.06,-96.9457,0	0/1:298:133,165:133:4743:165:5925:-443.647,0,-337.317	0/1:40:18,22:18:644:22:788:-59.2036,0,-46.2209	1/1:362:0,362:0:0:362:12989:-1168.62,-108.973,0	0/1:90:26,64:26:928:64:2270:-177.463,0,-56.7456	1/1:129:0,129:0:0:129:4563:-410.837,-38.8329,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:225:0,225:0:0:225:8067:-726.046,-67.7318,0	0/1:105:52,53:52:1868:53:1900:-139.67,0,-136.791	0/1:36:20,16:20:712:16:576:-41.3379,0,-53.5696	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	1/1:147:2,145:2:72:145:5185:-459.951,-37.4147,0	0/1:24:14,10:14:496:10:347:-24.3389,0,-37.7495	0/1:144:79,62:79:2793:62:2220:-157.263,0,-208.71	0/1:75:36,39:36:1288:39:1404:-104.082,0,-93.6179	1/1:74:0,74:0:0:74:2644:-238.207,-22.2762,0	0/1:126:65,61:65:2313:61:2196:-159.975,0,-170.357	1/1:121:1,120:1:36:120:4308:-384.297,-32.8264,0	1/1:197:4,193:4:144:193:6887:-606.582,-45.9893,0	0/1:143:78,65:78:2796:65:2321:-166.101,0,-208.734	0/1:175:97,78:97:3475:78:2804:-199.919,0,-260.206	0/1:198:108,90:108:3850:90:3236:-231.857,0,-286.984	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/1:142:86,56:86:3054:56:2004:-137.887,0,-232.341	1/1:74:0,74:0:0:74:2645:-238.295,-22.2762,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:219:0,219:0:0:219:7823:-704.097,-65.9256,0	0/1:37:20,17:20:712:17:604:-43.5525,0,-53.2685	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:59:29,30:29:1025:30:1065:-78.3999,0,-74.7715	1/1:69:0,69:0:0:69:2461:-221.743,-20.7711,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:297:156,141:156:5560:141:5057:-365.866,0,-410.962	1/1:261:1,260:1:36:260:9261:-829.859,-74.9706,0	0/1:94:49,45:49:1760:45:1601:-116.081,0,-130.387	1/1:104:0,104:0:0:104:3690:-332.302,-31.3071,0	0/1:280:134,146:134:4797:146:5213:-385.02,0,-347.426	1/1:199:0,199:0:0:199:7094:-638.52,-59.905,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:119:61,58:61:2172:58:2080:-151.648,0,-159.924	1/1:53:1,51:1:36:51:1817:-160.247,-12.3402,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:116:0,116:0:0:116:4156:-374.223,-34.9195,0	1/1:138:0,138:0:0:138:4943:-445.018,-41.5421,0	1/1:183:0,183:0:0:183:6509:-585.895,-55.0885,0	1/1:258:0,258:0:0:258:9231:-830.738,-77.6657,0	0/1:29:11,18:11:392:18:648:-49.922,0,-26.8902	0/1:203:112,91:112:4020:91:3257:-232.24,0,-300.879	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:141:4,137:4:144:137:4924:-430.024,-29.1607,0	0/1:200:99,100:99:3544:100:3580:-262.281,0,-259.042	1/1:308:0,308:0:0:308:11061:-995.219,-92.7172,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:62:0,62:0:0:62:2213:-199.063,-18.6639,0	0/1:162:85,77:85:3029:77:2744:-198.405,0,-224.044	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:64:34,30:34:1199:30:1076:-77.8869,0,-88.9489	0/1:75:45,30:45:1608:30:1080:-74.936,0,-122.433	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.354	0/1:89:42,47:42:1512:47:1688:-125.415,0,-109.583	0/1:87:64,23:64:2271:23:805:-46.5779,0,-178.406	1/1:279:1,278:1:36:278:9981:-894.625,-80.3891,0	1/1:124:0,124:0:0:124:4452:-400.821,-37.3277,0
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chr10	6758832	.	A	T	27995.7	PASS	AB=0.389364;ABP=524.817;AC=47;AF=0.25;AN=188;AO=1927;CIGAR=1X;DP=11657;DPB=11657;DPRA=0.843629;EPP=4187.44;EPPR=21127.1;GTI=3;LEN=1;MEANALT=1;MQM=59.9092;MQMR=59.9756;NS=94;NUMALT=1;ODDS=3.91174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68888;QR=348049;RO=9728;RPL=0;RPP=4187.44;RPPR=21127.1;RPR=1927;RUN=1;SAF=1927;SAP=4187.44;SAR=0;SRF=9728;SRP=21127.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:109:69,40:69:2465:40:1440:-97.0855,0,-189.288	0/0:147:147,0:147:5288:0:0:0,-44.2514,-475.966	0/0:294:294,0:294:10478:0:0:0,-88.5028,-942.93	0/1:213:128,85:128:4570:85:3033:-209.078,0,-347.344	0/1:25:18,7:18:648:7:252:-15.5032,0,-51.1261	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:101:55,46:55:1976:46:1626:-116.221,0,-147.711	0/0:275:274,1:274:9762:1:36:0,-79.185,-874.924	0/1:150:100,50:100:3569:50:1788:-116.048,0,-276.262	0/1:91:61,30:61:2192:30:1065:-68.7484,0,-170.152	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/1:128:58,70:58:2080:70:2520:-188.484,0,-148.938	0/0:89:89,0:89:3185:0:0:0,-26.7917,-286.872	0/0:77:77,0:77:2757:0:0:0,-23.1793,-248.37	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/1:81:39,42:39:1404:42:1508:-111.63,0,-102.276	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/1:28:14,14:14:474:14:496:-36.5448,0,-34.5509	0/1:220:141,79:141:5049:79:2821:-187.899,0,-388.327	0/1:259:193,66:193:6929:66:2376:-136.131,0,-545.618	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.653	0/0:201:201,0:201:7194:0:0:0,-60.507,-647.499	0/0:127:120,7:120:4301:7:248:0,-15.5666,-364.6	0/1:122:95,27:95:3408:27:972:-51.0718,0,-270.207	0/0:290:290,0:290:10398:0:0:0,-87.2987,-935.734	0/1:334:193,141:193:6876:141:5044:-353.561,0,-518.361	0/1:40:14,26:14:500:26:921:-71.164,0,-33.295	0/0:344:344,0:344:12357:0:0:0,-103.554,-1111.83	0/1:118:80,38:80:2857:38:1356:-86.8185,0,-221.845	0/0:170:170,0:170:6101:0:0:0,-51.1751,-549.058	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:37:21,16:21:756:16:561:-39.679,0,-57.2291	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:26:26,0:26:906:0:0:0,-7.82678,-81.8509	0/1:72:46,26:46:1648:26:936:-62.8849,0,-126.934	0/0:233:233,0:233:8365:0:0:0,-70.14,-752.85	0/1:67:36,31:36:1296:31:1112:-80.2222,0,-96.7749	0/1:56:36,20:36:1296:20:711:-47.458,0,-100.086	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:173:170,3:170:6120:3:93:0,-43.4023,-542.22	0/1:43:21,22:21:752:22:788:-58.3005,0,-55.062	0/1:221:133,88:133:4735:88:3134:-215.755,0,-359.778	0/1:72:35,37:35:1245:37:1328:-98.1477,0,-90.6786	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:114:60,54:60:2156:54:1911:-137.946,0,-159.99	0/0:183:183,0:183:6535:0:0:0,-55.0885,-588.207	0/0:220:220,0:220:7870:0:0:0,-66.2266,-708.324	0/1:85:56,29:56:2012:29:1038:-68.1458,0,-155.765	0/1:168:109,59:109:3893:59:2101:-138.784,0,-299.99	0/1:145:88,57:88:3164:57:2033:-139.59,0,-241.334	0/1:16:5,11:5:180:11:396:-31.1659,0,-11.7356	0/1:174:108,66:108:3861:66:2368:-160.998,0,-295.305	0/0:115:115,0:115:4085:0:0:0,-34.6184,-367.835	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:220:220,0:220:7870:0:0:0,-66.2266,-708.323	0/1:83:51,32:51:1813:32:1133:-77.2912,0,-138.464	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.583	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:97:69,28:69:2465:28:1008:-61.8364,0,-192.902	0/0:100:99,1:99:3545:1:36:0,-26.5047,-315.658	0/1:25:10,15:10:360:15:540:-41.4108,0,-25.2186	0/1:112:75,37:75:2673:37:1328:-86.1065,0,-207.099	0/0:251:249,2:249:8903:2:72:0,-68.7218,-794.412	0/1:101:70,31:70:2501:31:1097:-68.6254,0,-194.805	0/0:141:141,0:141:5049:0:0:0,-42.4452,-454.551	0/1:226:153,73:153:5496:73:2605:-166.663,0,-426.732	0/0:244:244,0:244:8644:0:0:0,-73.4513,-777.879	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:42:31,11:31:1112:11:396:-23.3395,0,-87.7481	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:254:254,0:254:9075:0:0:0,-76.4616,-816.678	0/0:172:171,1:171:6103:1:36:0,-48.1789,-545.769	0/0:386:386,0:386:13758:0:0:0,-116.198,-1237.99	0/0:233:233,0:233:8350:0:0:0,-70.14,-751.274	0/1:97:66,31:66:2357:31:1112:-71.1914,0,-183.187	0/1:144:93,51:93:3318:51:1821:-120.802,0,-255.487	0/0:39:39,0:39:1389:0:0:0,-11.7402,-125.307	0/0:201:200,1:200:7151:1:36:0,-56.9088,-640.044	0/1:154:92,62:92:3270:62:2216:-153.33,0,-248.16	0/0:268:266,0:266:9495:0:0:0,-80.074,-854.144	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:100:100,0:100:3577:0:0:0,-30.103,-322.136	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:126:61,65:61:2196:65:2340:-172.843,0,-159.975	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:51:27,24:27:957:24:860:-62.3601,0,-71.0913	0/1:94:48,46:48:1728:46:1648:-120.31,0,-127.508	0/1:40:21,19:21:756:19:684:-49.8311,0,-56.326	0/1:118:66,52:66:2357:52:1868:-132.877,0,-176.865	0/1:76:32,44:32:1152:44:1572:-118.893,0,-81.1119	0/0:235:235,0:235:8452:0:0:0,-70.742,-760.674	0/0:130:130,0:130:4631:0:0:0,-39.1339,-416.95
chr10	6829779	.	G	A	106031	PASS	AB=0.472703;ABP=26.9575;AC=140;AF=0.752688;AN=186;AO=5092;CIGAR=1X;DP=7053;DPB=7053;DPRA=0;EPP=11051.5;EPPR=4261.27;GTI=1;LEN=1;MEANALT=1;MQM=59.9741;MQMR=59.9816;NS=93;NUMALT=1;ODDS=2.16784;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182030;QR=70095;RO=1961;RPL=0;RPP=11060.1;RPPR=4261.27;RPR=5092;RUN=1;SAF=5091;SAP=11051.5;SAR=1;SRF=1961;SRP=4261.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:35,28:35:1252:28:1004:-71.711,0,-94.0202	1/1:61:0,61:0:0:61:2173:-195.836,-18.3628,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	0/1:153:72,81:72:2564:81:2893:-214.547,0,-184.953	0/1:68:37,31:37:1328:31:1116:-80.2817,0,-99.3522	0/1:42:21,21:21:752:21:748:-55.002,0,-55.363	0/1:101:48,53:48:1708:53:1887:-139.704,0,-123.602	1/1:100:0,100:0:0:100:3585:-322.856,-30.103,0	0/1:80:50,30:50:1792:30:1076:-73.0705,0,-137.48	0/1:53:30,23:30:1068:23:820:-58.1679,0,-80.4775	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:129:72,57:72:2567:57:2052:-146.118,0,-192.447	1/1:99:0,99:0:0:99:3535:-318.36,-29.802,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:96:0,96:0:0:96:3440:-309.813,-28.8989,0	0/1:65:33,32:33:1176:32:1152:-84.4232,0,-86.5808	1/1:27:0,27:0:0:27:964:-87.0749,-8.12781,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:50:16,34:16:576:34:1224:-95.4155,0,-37.1235	0/1:263:131,132:131:4700:132:4732:-346.867,0,-343.988	0/1:140:88,52:88:3144:52:1839:-123.644,0,-241.042	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:80:0,80:0:0:80:2864:-257.987,-24.0824,0	1/1:84:5,79:5:180:79:2816:-237.126,-8.73446,0	0/1:89:60,29:60:2148:29:1025:-65.769,0,-166.796	1/1:162:0,162:0:0:162:5797:-521.825,-48.7669,0	0/1:212:109,103:109:3904:103:3700:-269.383,0,-287.735	0/1:44:21,23:21:756:23:828:-61.5988,0,-55.1219	1/1:153:0,153:0:0:153:5446:-490.266,-46.0576,0	0/1:68:34,34:34:1212:34:1224:-89.997,0,-88.9163	1/1:72:0,72:0:0:72:2572:-231.73,-21.6742,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:17:7,10:7:248:10:345:-26.2633,0,-17.5467	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	1/1:218:0,218:0:0:218:7805:-702.479,-65.6245,0	0/1:58:30,28:30:1072:28:989:-71.8623,0,-79.3327	0/1:40:22,18:22:792:18:648:-46.6107,0,-59.5645	.:.:.:.:.:.:.:.	1/1:60:1,59:1:36:59:2096:-185.312,-14.4635,0	0/1:40:22,18:22:788:18:640:-45.8881,0,-59.2036	0/1:99:55,44:55:1968:44:1569:-111.698,0,-147.593	0/1:63:23,40:23:828:40:1417:-108.857,0,-55.8792	1/1:81:1,80:1:36:80:2859:-253.952,-20.7878,0	0/1:83:38,45:38:1360:45:1608:-120.025,0,-97.7151	1/1:66:1,65:1:36:65:2328:-206.182,-16.2697,0	1/1:80:0,80:0:0:80:2857:-257.366,-24.0824,0	0/1:67:47,20:47:1684:20:716:-44.5987,0,-131.678	0/1:76:34,42:34:1216:42:1508:-113.136,0,-86.8683	0/1:93:35,58:35:1252:58:2054:-157.132,0,-84.9893	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/1:100:50,50:50:1796:50:1777:-130.108,0,-131.819	1/1:39:0,39:0:0:39:1376:-124.134,-11.7402,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:106:0,106:0:0:106:3772:-339.681,-31.9092,0	0/1:71:48,23:48:1720:23:819:-52.6584,0,-133.712	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:6:1,5:1:36:5:165:-13.3674,0,-1.79209	0/1:64:36,28:36:1280:28:1008:-71.7704,0,-96.2373	1/1:114:0,114:0:0:114:4077:-367.115,-34.3174,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/1:107:61,46:61:2176:46:1633:-115.047,0,-163.896	1/1:131:0,131:0:0:131:4689:-422.17,-39.4349,0	0/1:64:33,31:33:1171:31:1112:-81.1254,0,-86.4261	1/1:54:0,54:0:0:54:1917:-172.803,-16.2556,0	0/1:96:57,39:57:2044:39:1377:-95.3269,0,-155.333	1/1:110:0,110:0:0:110:3944:-355.151,-33.1133,0	1/1:43:0,43:0:0:43:1531:-138.082,-12.9443,0	0/1:52:39,13:39:1388:13:464:-26.4439,0,-109.565	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:102:0,102:0:0:102:3640:-327.804,-30.7051,0	1/1:70:0,70:0:0:70:2478:-223.271,-21.0721,0	1/1:68:0,68:0:0:68:2424:-218.416,-20.47,0	1/1:87:0,87:0:0:87:3117:-280.755,-26.1896,0	0/1:93:49,44:49:1748:44:1580:-114.496,0,-129.608	0/1:104:70,34:70:2488:34:1216:-78.4394,0,-192.867	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:50:1,49:1:36:49:1760:-155.077,-11.4532,0	0/1:102:44,58:44:1561:58:2084:-157.125,0,-110.075	1/1:106:0,106:0:0:106:3808:-342.916,-31.9092,0	1/1:70:0,70:0:0:70:2476:-223.092,-21.0721,0	1/1:74:1,73:1:36:73:2606:-231.601,-19.0886,0	1/1:62:0,62:0:0:62:2217:-199.794,-18.6639,0	0/1:148:69,79:69:2476:79:2836:-210.926,0,-178.541	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:69:36,33:36:1284:33:1188:-86.4575,0,-95.0923	0/1:86:44,42:44:1576:42:1508:-110.126,0,-116.243	0/1:46:24,22:24:860:22:788:-57.3974,0,-63.8745	0/1:97:39,58:39:1376:58:2088:-158.99,0,-94.9387	0/1:105:61,44:61:2188:44:1580:-110.883,0,-165.578	1/1:87:0,87:0:0:87:3105:-279.674,-26.1896,0	1/1:118:0,118:0:0:118:4235:-381.169,-35.5215,0
chr10	6829803	.	C	G	34140	PASS	AB=0.528205;ABP=28.6114;AC=47;AF=0.252688;AN=186;AO=1975;CIGAR=1X;DP=7091;DPB=7091;DPRA=1.09834;EPP=4248.35;EPPR=11003.9;GTI=2;LEN=1;MEANALT=1.1;MQM=59.9929;MQMR=59.9781;NS=93;NUMALT=1;ODDS=2.20904;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70762;QR=182567;RO=5106;RPL=1970;RPP=4248.35;RPPR=11012.5;RPR=5;RUN=1;SAF=1975;SAP=4291.67;SAR=0;SRF=5105;SRP=11081.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:65:29,36:29:1036:36:1292:-97.0168,0,-73.987	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/1:155:83,72:83:2980:72:2564:-184.349,0,-221.772	0/1:71:33,38:33:1175:38:1368:-102.048,0,-84.6838	0/1:43:21,22:21:756:22:788:-58.3005,0,-55.4229	0/1:100:53,47:53:1896:47:1680:-121.383,0,-140.815	0/0:99:99,0:99:3508:0:0:0,-29.802,-315.931	0/1:80:30,49:30:1076:49:1764:-134.903,0,-73.0117	0/1:53:23,30:23:824:30:1080:-81.5587,0,-58.5287	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:131:57,74:57:2043:74:2651:-199.401,0,-144.706	0/0:100:100,0:100:3566:0:0:0,-30.103,-321.145	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:97:97,0:97:3458:0:0:0,-29.1999,-311.43	0/1:68:34,34:34:1224:34:1220:-89.6364,0,-89.997	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9778	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:50:34,16:34:1224:16:559:-35.5853,0,-95.4155	0/1:259:127,131:127:4529:131:4697:-344.862,0,-329.752	0/1:144:52,92:52:1868:92:3289:-252.88,0,-125.051	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.706	0/0:84:79,5:79:2819:5:180:0,-8.73445,-237.397	0/1:90:29,61:29:1044:61:2192:-170.453,0,-67.1821	0/0:166:166,0:166:5927:0:0:0,-49.971,-533.53	0/1:210:104,106:104:3704:106:3808:-279.7,0,-270.345	0/1:44:23,21:23:828:21:747:-54.309,0,-61.5988	0/0:150:150,0:150:5370:0:0:0,-45.1545,-483.417	0/1:68:34,34:34:1220:34:1224:-89.997,0,-89.6368	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/0:219:218,0:218:7826:0:0:0,-65.6245,-704.004	0/1:59:28,31:28:999:31:1116:-82.9909,0,-72.4637	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6107	.:.:.:.:.:.:.:.	0/0:60:58,1:58:2080:1:36:0,-14.5223,-183.872	0/1:39:16,23:16:572:23:828:-63.1039,0,-40.0733	0/1:98:42,56:42:1512:56:2012:-151.852,0,-106.874	0/1:63:40,23:40:1432:23:828:-55.8792,0,-110.126	0/0:79:78,0:78:2775:0:0:0,-23.4803,-249.632	0/1:82:44,38:44:1564:38:1359:-97.9254,0,-116.367	0/0:66:65,1:65:2327:1:36:0,-16.2697,-206.091	0/0:80:80,0:80:2854:0:0:0,-24.0824,-257.097	0/1:66:19,47:19:675:47:1684:-131.979,0,-41.209	0/1:78:43,35:43:1532:35:1260:-90.2251,0,-114.693	0/1:94:56,38:56:2004:38:1364:-94.7624,0,-152.337	1/1:12:1,10:1:36:10:360:-29.146,-0.0728826,0	0/1:98:49,49:49:1749:49:1764:-129.543,0,-128.191	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.554	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:107:107,0:107:3835:0:0:0,-32.2102,-345.345	0/1:71:23,48:23:824:48:1724:-134.07,0,-53.11	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:8:6,2:6:204:2:72:-4.42848,0,-16.2851	0/1:65:29,36:29:1025:36:1296:-97.377,0,-72.9937	0/0:113:112,0:112:3976:0:0:0,-33.7154,-357.671	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:107:46,61:46:1648:61:2181:-164.344,0,-116.398	0/0:133:133,0:133:4759:0:0:0,-40.037,-428.467	0/1:64:31,33:31:1108:33:1180:-87.2403,0,-80.7651	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.394	0/1:99:40,59:40:1428:59:2101:-159.556,0,-99.004	0/0:110:110,0:110:3941:0:0:0,-33.1133,-354.88	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:50:13,37:13:456:37:1332:-105.131,0,-26.3217	0/0:44:44,0:44:1556:0:0:0,-13.2453,-140.329	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:104:104,0:104:3740:0:0:0,-31.3071,-336.763	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:93:43,50:43:1540:50:1796:-133.927,0,-110.897	0/1:103:33,70:33:1188:70:2512:-195.326,0,-76.2225	0/0:30:30,0:30:1067:0:0:0,-9.0309,-96.3412	0/0:50:49,1:49:1760:1:36:0,-11.4532,-155.077	0/1:105:60,45:60:2144:45:1605:-113.13,0,-161.62	0/0:109:109,0:109:3866:0:0:0,-32.8123,-348.135	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:74:73,0:73:2612:0:0:0,-21.9752,-235.009	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.831	0/1:146:77,68:77:2763:68:2413:-173.414,0,-204.901	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:70:33,37:33:1170:37:1322:-98.21,0,-84.5338	0/1:85:42,43:42:1508:43:1548:-114.026,0,-110.427	0/1:47:22,25:22:779:25:900:-67.1726,0,-56.2837	0/1:97:58,39:58:2069:39:1392:-96.3791,0,-157.279	0/1:106:45,61:45:1620:61:2162:-162.934,0,-114.181	0/0:86:86,0:86:3066:0:0:0,-25.8886,-276.168	0/0:118:117,0:117:4149:0:0:0,-35.2205,-373.384
chr10	6831772	.	GTAT	ATAC,ATAT	184702	PASS	AB=0.524859,0.472891;ABP=26.8701,31.384;AC=139,49;AF=0.739362,0.260638;AN=188;AO=7054,2130;CIGAR=1X2M1X,1X3M;DP=9202;DPB=9203;DPRA=39.987,1.15025;EPP=15320.6,4628.25;EPPR=0;GTI=2;LEN=4,1;MEANALT=1.78261,2.16949;MQM=38.5391,59.5385;MQMR=0;NS=94;NUMALT=2;ODDS=0.890866;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=140,0;PQR=0;PRO=0;QA=251705,76326;QR=0;RO=0;RPL=0,0;RPP=15320.6,4628.25;RPPR=0;RPR=7054,2130;RUN=1,1;SAF=7054,2130;SAP=15320.6,4628.25;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:38:0,25,13:0:0:25,13:896,468:-104.207,-38.5463,-31.0205,-66.0091,0,-62.0957	1/1:149:0,149,0:0:0:149,0:5325,0:-438.357,-44.8535,0,-438.357,-44.8535,-438.357	1/1:101:0,98,0:0:0:98,0:3495,0:-285.994,-29.5009,0,-285.994,-29.5009,-285.994	1/2:200:0,96,104:0:0:96,104:3412,3736:-569.906,-305.118,-276.219,-265.138,0,-233.83	1/2:43:0,19,24:0:0:19,24:682,844:-119.886,-69.0542,-63.3346,-51.1722,0,-43.9475	1/2:44:0,23,20:0:0:23,20:819,720:-119.092,-58.7832,-51.8595,-60.3585,0,-54.3379	1/2:111:0,53,58:0:0:53,58:1899,2084:-317.943,-170.357,-154.402,-147.937,0,-130.477	1/1:124:0,123,1:0:0:123,1:4392,36:-360.084,-37.0267,0,-357.146,-33.7294,-356.845	1/2:97:0,61,36:0:0:61,36:2166,1288:-264.35,-105.052,-86.6891,-159.327,0,-148.49	1/2:97:0,48,49:0:0:48,49:1723,1759:-276.491,-143.842,-129.392,-132.999,0,-118.248	1/1:49:0,49,0:0:0:49,0:1754,0:-149.341,-14.7505,0,-149.341,-14.7505,-149.341	1/2:73:0,35,38:0:0:35,38:1258,1364:-204.065,-111.604,-101.068,-92.8037,0,-81.3646	1/1:91:0,91,0:0:0:91,0:3241,0:-266.816,-27.3937,0,-266.816,-27.3937,-266.816	1/1:72:0,72,0:0:0:72,0:2569,0:-215.353,-21.6742,0,-215.353,-21.6742,-215.353	1/1:79:0,79,0:0:0:79,0:2823,0:-242.525,-23.7814,0,-242.525,-23.7814,-242.525	1/2:51:0,19,32:0:0:19,32:684,1144:-145.373,-93.632,-87.9124,-52.0853,0,-42.4523	1/1:70:0,70,0:0:0:70,0:2478,0:-203.252,-21.0721,0,-203.252,-21.0721,-203.252	1/1:60:0,59,1:0:0:59,1:2123,36:-172.133,-17.7608,0,-169.464,-14.7628,-169.163	1/2:26:0,15,11:0:0:15,11:532,396:-71.7827,-32.6632,-28.1477,-39.4639,0,-36.1525	1/2:226:0,122,104:0:0:122,104:4335,3701:-639.29,-301.95,-265.225,-337.689,0,-306.382	1/2:118:0,52,66:0:0:52,66:1855,2368:-334.278,-193.422,-177.768,-141.201,0,-121.333	1/1:118:0,118,0:0:0:118,0:4228,0:-369.148,-35.5215,0,-369.148,-35.5215,-369.148	1/1:92:0,92,0:0:0:92,0:3299,0:-283.204,-27.6948,0,-283.204,-27.6948,-283.204	1/1:138:0,128,10:0:0:128,10:4577,360:-385.155,-38.5318,0,-355.797,-8.81559,-352.786	1/2:76:0,41,33:0:0:41,33:1473,1188:-206.55,-96.9587,-84.6165,-109.62,0,-99.686	1/1:305:0,304,0:0:0:304,0:10826,0:-938.178,-91.5131,0,-938.178,-91.5131,-938.178	1/2:159:0,73,85:0:0:73,85:2623,3056:-447.637,-249.25,-227.274,-198.375,0,-172.788	1/2:41:0,25,16:0:0:25,16:899,576:-115.777,-47.3322,-39.8065,-68.7954,0,-63.9789	1/1:276:0,274,1:0:0:274,1:9806,36:-854.78,-82.4822,0,-851.845,-79.5384,-851.543	1/2:194:0,100,93:0:0:100,93:3559,3328:-539.79,-271.36,-241.257,-268.416,0,-240.42	1/1:122:0,122,0:0:0:122,0:4320,0:-373.335,-36.7257,0,-373.335,-36.7257,-373.335	1/1:5:0,5,0:0:0:5,0:179,0:-15.4528,-1.50515,0,-15.4528,-1.50515,-15.4528	1/2:20:0,13,7:0:0:13,7:468,252:-56.3891,-20.9217,-17.0084,-35.8191,0,-33.7119	1/1:1:0,1,0:0:0:1,0:36,0:-3.29902,-0.30103,0,-3.29902,-0.30103,-3.29902	1/1:4:0,4,0:0:0:4,0:142,0:-12.0214,-1.20412,0,-12.0214,-1.20412,-12.0214	1/1:6:0,6,0:0:0:6,0:216,0:-18.1446,-1.80618,0,-18.1446,-1.80618,-18.1446	1/1:233:0,232,0:0:0:232,0:8293,0:-722.97,-69.839,0,-722.97,-69.839,-722.97	1/2:237:0,106,130:0:0:106,130:3758,4660:-665.363,-380.076,-348.166,-285.293,0,-246.159	1/2:54:0,23,31:0:0:23,31:822,1112:-151.43,-91.0594,-84.1357,-60.7098,0,-51.3779	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:197:0,196,1:0:0:196,1:6978,36:-586.412,-59.0019,0,-583.475,-55.7046,-583.174	1/2:29:0,12,17:0:0:12,17:431,612:-82.61,-50.2913,-46.6789,-32.6627,0,-27.5452	1/2:157:0,112,45:0:0:112,45:3995,1620:-435.05,-132.51,-98.7943,-302.893,0,-289.346	1/2:83:0,44,39:0:0:44,39:1566,1404:-236.523,-114.912,-101.666,-121.962,0,-110.222	1/1:53:0,53,0:0:0:53,0:1888,0:-161.96,-15.9546,0,-161.96,-15.9546,-161.96	1/2:88:0,58,30:0:0:58,30:2077,1076:-250.744,-88.1011,-70.6413,-162.997,0,-153.966	1/1:120:0,120,0:0:0:120,0:4274,0:-348.381,-36.1236,0,-348.381,-36.1236,-348.381	1/1:124:0,122,2:0:0:122,2:4367,72:-374,-36.7257,0,-368.125,-30.491,-367.523	1/2:114:0,76,38:0:0:76,38:2707,1360:-321.331,-111.175,-88.2969,-210.508,0,-199.069	1/2:133:0,90,43:0:0:90,43:3214,1544:-374.208,-126.165,-99.0725,-248.395,0,-235.451	1/2:162:0,92,70:0:0:92,70:3285,2516:-464.883,-205.511,-177.816,-259.726,0,-238.654	1/2:5:0,3,2:0:0:3,2:102,72:-14.1939,-6.23466,-5.33157,-8.3067,0,-7.70464	1/2:188:0,115,73:0:0:115,73:4064,2624:-514.028,-214.396,-179.777,-299.977,0,-278.002	1/1:23:0,23,0:0:0:23,0:817,0:-71.5623,-6.92369,0,-71.5623,-6.92369,-71.5623	1/1:19:0,19,0:0:0:19,0:679,0:-56.474,-5.71957,0,-56.474,-5.71957,-56.474	1/1:89:0,89,0:0:0:89,0:3166,0:-265.956,-26.7917,0,-265.956,-26.7917,-265.956	1/2:59:0,34,25:0:0:34,25:1199,896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chr10	6831794	.	T	A	135187	PASS	AB=0.52616;ABP=29.1411;AC=139;AF=0.739362;AN=188;AO=7000;CIGAR=1X;DP=9111;DPB=9111;DPRA=39.5913;EPP=15142.6;EPPR=4474.67;GTI=2;LEN=1;MEANALT=1.04348;MQM=38.6189;MQMR=59.6222;NS=94;NUMALT=1;ODDS=0.856373;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250384;QR=75626;RO=2107;RPL=7;RPP=15142.6;RPPR=4474.67;RPR=6993;RUN=1;SAF=7000;SAP=15203.3;SAR=0;SRF=2107;SRP=4578.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:13,26:13:468:26:913:-63.3906,0,-30.7195	1/1:144:0,144:0:0:144:5141:-423.205,-43.3483,0	1/1:98:0,98:0:0:98:3504:-286.451,-29.5009,0	0/1:198:103,95:103:3704:95:3376:-230.553,0,-273.942	0/1:43:24,19:24:864:19:676:-43.5375,0,-65.1383	0/1:45:20,25:20:720:25:888:-60.1909,0,-51.551	0/1:111:58,53:58:2084:53:1892:-130.137,0,-154.4	1/1:124:1,123:1:36:123:4393:-356.771,-33.7294,0	0/1:98:36,62:36:1296:62:2216:-152.001,0,-87.4245	0/1:97:49,48:49:1764:48:1720:-117.991,0,-129.839	1/1:48:0,48:0:0:48:1724:-146.679,-14.4494,0	0/1:71:38,33:38:1364:33:1188:-76.0485,0,-101.67	1/1:88:0,88:0:0:88:3160:-259.343,-26.4906,0	1/1:73:0,73:0:0:73:2616:-219.376,-21.9752,0	1/1:78:0,77:0:0:77:2756:-236.315,-23.1793,0	0/1:52:32,20:32:1152:20:716:-45.0769,0,-88.332	1/1:68:0,68:0:0:68:2436:-198.063,-20.47,0	1/1:59:0,59:0:0:59:2120:-173.141,-17.7608,0	0/1:26:11,15:11:396:15:540:-36.5797,0,-28.1477	0/1:222:101,120:101:3619:120:4297:-303.647,0,-259.012	0/1:117:65,52:65:2315:52:1868:-122.211,0,-173.33	1/1:118:0,118:0:0:118:4236:-370.159,-35.5215,0	1/1:91:0,91:0:0:91:3253:-279.374,-27.3937,0	1/1:135:11,124:11:396:124:4440:-337.876,-4.67495,0	0/1:76:34,42:34:1224:42:1508:-101.663,0,-87.5714	1/1:301:0,301:0:0:301:10774:-933.005,-90.61,0	0/1:160:87,73:87:3116:73:2620:-172.436,0,-232.434	0/1:41:16,25:16:576:25:900:-64.0367,0,-39.8242	1/1:270:0,270:0:0:270:9684:-844.918,-81.2781,0	0/1:192:93,99:93:3344:99:3541:-240.153,0,-243.355	1/1:123:0,123:0:0:123:4408:-380.449,-37.0267,0	1/1:5:0,5:0:0:5:180:-15.5015,-1.50515,0	0/1:20:7,13:7:252:13:464:-33.49,0,-17.0084	1/1:1:0,1:0:0:1:36:-3.29902,-0.30103,0	1/1:3:0,3:0:0:3:108:-9.23727,-0.90309,0	1/1:6:0,6:0:0:6:212:-17.9205,-1.80618,0	1/1:232:0,231:0:0:231:8276:-721.296,-69.5379,0	0/1:236:128,108:128:4575:108:3826:-252.049,0,-340.869	0/1:54:32,22:32:1152:22:792:-48.7253,0,-87.7345	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:192:1,191:1:36:191:6856:-572.066,-54.1995,0	0/1:28:17,11:17:612:11:396:-24.855,0,-46.98	0/1:155:44,111:44:1580:111:3973:-287.513,0,-95.798	0/1:82:37,45:37:1328:45:1608:-114.169,0,-95.1307	1/1:51:0,51:0:0:51:1809:-155.61,-15.3525,0	0/1:87:30,57:30:1072:57:2029:-150.151,0,-70.5819	1/1:119:0,119:0:0:119:4276:-348.279,-35.8226,0	1/1:123:2,121:2:72:121:4313:-363.06,-30.19,0	0/1:108:34,74:34:1224:74:2648:-195.901,0,-77.9558	0/1:131:42,89:42:1508:89:3165:-232.311,0,-96.436	0/1:158:69,89:69:2480:89:3196:-231.932,0,-175.799	0/1:5:2,3:2:72:3:104:-7.8703,0,-5.33157	0/1:187:72,115:72:2588:115:4111:-280.761,0,-176.84	1/1:23:0,23:0:0:23:816:-71.2826,-6.92369,0	1/1:20:0,20:0:0:20:720:-59.8967,-6.0206,0	1/1:89:0,89:0:0:89:3169:-265.787,-26.7917,0	0/1:58:25,33:25:900:33:1179:-84.271,0,-63.8613	0/1:9:1,8:1:36:8:288:-22.2482,0,-0.889005	0/1:13:6,7:6:216:7:252:-18.4598,0,-15.8747	0/1:98:43,55:43:1548:55:1976:-137.13,0,-110.096	1/1:111:1,110:1:36:110:3928:-333.148,-29.8161,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:263:128,135:128:4585:135:4809:-342.14,0,-333.629	1/1:169:0,169:0:0:169:6030:-517.286,-50.8741,0	0/1:84:36,47:36:1296:47:1676:-116.735,0,-91.5841	1/1:76:0,76:0:0:76:2716:-232.365,-22.8783,0	0/1:137:61,76:61:2177:76:2705:-192.297,0,-154.882	1/1:100:1,99:1:36:99:3514:-300.235,-26.5047,0	1/1:23:0,23:0:0:23:820:-69.5655,-6.92369,0	0/1:72:30,42:30:1076:42:1504:-100.84,0,-75.4787	1/1:79:0,79:0:0:79:2836:-245.835,-23.7814,0	1/1:39:2,37:2:72:37:1313:-106.573,-5.14297,0	1/1:89:1,88:1:36:88:3137:-254.463,-23.1934,0	1/1:76:0,76:0:0:76:2724:-224.552,-22.8783,0	1/1:136:1,135:1:36:135:4813:-401.175,-37.3418,0	1/1:221:0,221:0:0:221:7891:-677.09,-66.5276,0	0/1:76:48,28:48:1709:28:1008:-60.587,0,-131.187	0/1:145:70,75:70:2520:75:2688:-177.354,0,-183.366	1/1:12:0,12:0:0:12:432:-35.3297,-3.61236,0	1/1:135:0,135:0:0:135:4848:-403.541,-40.6391,0	0/1:114:66,48:66:2368:48:1720:-106.483,0,-178.811	1/1:224:0,224:0:0:224:8014:-688.463,-67.4307,0	1/1:102:0,102:0:0:102:3664:-315.601,-30.7051,0	1/1:88:0,88:0:0:88:3141:-269.204,-26.4906,0	1/1:107:0,107:0:0:107:3836:-329.409,-32.2102,0	0/1:151:81,70:81:2907:70:2512:-170.592,0,-216.361	1/1:36:0,36:0:0:36:1284:-104.919,-10.8371,0	0/1:79:40,39:40:1431:39:1396:-90.8971,0,-105.302	0/1:91:52,39:52:1872:39:1404:-88.5308,0,-141.263	0/1:27:14,13:14:504:13:464:-30.9864,0,-37.5703	0/1:67:39,28:39:1404:28:1008:-65.4572,0,-106.429	0/1:73:47,26:47:1692:26:932:-58.4225,0,-130.582	1/1:89:0,89:0:0:89:3183:-272.983,-26.7917,0	1/1:116:0,116:0:0:116:4152:-355.158,-34.9195,0
chr10	6831869	.	T	C	36004	PASS	AB=0.513345;ABP=9.44327;AC=48;AF=0.255319;AN=188;AO=2157;CIGAR=1X;DP=8761;DPB=8761;DPRA=1.15515;EPP=4686.88;EPPR=14339.1;GTI=1;LEN=1;MEANALT=1.03704;MQM=59.9861;MQMR=59.9471;NS=94;NUMALT=1;ODDS=4.08717;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76587;QR=235683;RO=6602;RPL=0;RPP=4686.88;RPPR=14339.1;RPR=2157;RUN=1;SAF=0;SAP=4686.88;SAR=2157;SRF=0;SRP=14339.1;SRR=6602;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:90:48,42:48:1716:42:1496:-107.842,0,-127.633	0/0:74:74,0:74:2637:0:0:0,-22.2762,-237.576	0/0:170:169,1:169:6045:1:36:0,-47.5768,-540.513	0/1:274:168,106:168:5966:106:3783:-258.185,0,-454.567	0/1:54:19,35:19:680:35:1244:-96.009,0,-45.2735	0/1:42:25,17:25:896:17:608:-42.4088,0,-68.3171	0/1:39:19,20:19:676:20:691:-50.769,0,-49.4278	0/0:160:158,2:158:5648:2:72:0,-41.3281,-500.243	0/1:131:55,76:55:1959:76:2697:-203.539,0,-137.15	0/1:76:31,45:31:1093:45:1616:-122.852,0,-75.7994	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:87:36,51:36:1277:51:1784:-134.653,0,-89.0406	0/0:71:71,0:71:2520:0:0:0,-21.3731,-227.053	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:56:28,28:28:1004:28:984:-72.0157,0,-73.8182	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:26:14,12:14:504:12:428:-31.032,0,-37.8713	0/1:170:92,78:92:3292:78:2731:-194.855,0,-245.324	0/1:142:68,74:68:2428:74:2643:-195.37,0,-176.022	0/0:125:125,0:125:4431:0:0:0,-37.6287,-398.96	0/0:132:132,0:132:4720:0:0:0,-39.736,-424.96	0/0:51:49,2:49:1748:2:68:0,-8.89482,-151.147	0/1:90:26,64:26:932:64:2240:-174.769,0,-57.1062	0/0:259:259,0:259:9259:0:0:0,-77.9668,-833.28	0/1:225:116,109:116:4152:109:3868:-280.582,0,-306.13	0/1:28:16,12:16:572:12:428:-30.43,0,-43.3846	0/0:323:322,1:322:11449:1:36:0,-93.6344,-1026.05	0/1:112:49,63:49:1760:63:2244:-168.501,0,-124.969	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.38	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:23:15,8:15:531:8:288:-19.3437,0,-41.1982	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.074	0/1:21:15,6:15:540:6:216:-13.4689,0,-42.6149	0/0:164:163,1:163:5856:1:36:0,-45.7706,-523.549	0/1:174:83,91:83:2980:91:3260:-241.241,0,-215.624	0/1:36:18,18:18:648:18:631:-46.2786,0,-47.8148	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/0:176:170,6:170:6061:6:216:0,-33.1908,-525.804	0/1:31:14,17:14:492:17:608:-45.7201,0,-35.2666	0/1:145:69,76:69:2480:76:2692:-198.875,0,-179.804	0/1:38:16,22:16:568:22:769:-58.0895,0,-40.0127	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/1:153:55,98:55:1976:98:3494:-268.613,0,-132.057	0/0:158:158,0:158:5663:0:0:0,-47.5627,-509.77	0/0:180:180,0:180:6436:0:0:0,-54.1854,-579.325	0/1:109:44,65:44:1565:65:2295:-173.997,0,-108.327	0/1:126:57,69:57:2044:69:2423:-180.395,0,-146.302	0/1:111:52,59:52:1845:59:2101:-155.943,0,-132.914	0/1:18:11,7:11:388:7:233:-15.8758,0,-29.8388	0/1:124:67,57:67:2396:57:2027:-145.374,0,-178.569	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:160:160,0:160:5696:0:0:0,-48.1648,-512.757	0/1:56:30,26:30:1068:26:913:-65.6263,0,-79.5614	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:14:11,3:11:392:3:108:-5.86075,0,-31.4056	0/1:45:20,25:20:711:25:896:-67.414,0,-50.7693	0/0:107:107,0:107:3831:0:0:0,-32.2102,-344.986	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:243:116,126:116:4156:126:4456:-328.041,0,-301.053	0/0:139:139,0:139:4953:0:0:0,-41.8432,-445.92	0/1:81:37,44:37:1332:44:1571:-117.297,0,-95.799	0/0:109:109,0:109:3884:0:0:0,-32.8123,-349.756	0/1:170:80,90:80:2856:90:3236:-240.268,0,-206.102	0/0:127:126,1:126:4517:1:36:0,-34.6325,-403.096	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:74:40,34:40:1416:34:1214:-87.2903,0,-105.461	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.983	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:126:126,0:126:4476:0:0:0,-37.9298,-403.011	0/0:128:128,0:128:4596:0:0:0,-38.5318,-413.789	0/0:202:202,0:202:7180:0:0:0,-60.8081,-646.257	0/0:228:228,0:228:8101:0:0:0,-68.6348,-729.111	0/1:79:27,52:27:964:52:1863:-144.167,0,-63.2955	0/1:92:44,48:44:1580:48:1724:-127.751,0,-114.797	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:122:122,0:122:4330:0:0:0,-36.7257,-389.876	0/1:134:77,57:77:2741:57:2048:-144.254,0,-206.593	0/0:175:175,0:175:6238:0:0:0,-52.6802,-561.49	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/0:80:80,0:80:2851:0:0:0,-24.0824,-256.828	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.123	0/1:106:59,47:59:2116:47:1661:-117.867,0,-158.8	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:56:21,35:21:734:35:1243:-95.3162,0,-49.5227	0/1:85:50,35:50:1792:35:1233:-85.6845,0,-135.975	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	0/1:87:46,41:46:1644:41:1456:-105.146,0,-122.056	0/1:55:23,31:23:820:31:1087:-81.5232,0,-57.5068	0/0:152:152,0:152:5432:0:0:0,-45.7566,-489.011	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.833
chr10	6831870	.	G	T	138966	PASS	AB=0.485379;ABP=10.7572;AC=140;AF=0.744681;AN=188;AO=6596;CIGAR=1X;DP=8764;DPB=8764;DPRA=11.7688;EPP=14326;EPPR=4708.59;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.953;MQMR=59.9871;NS=94;NUMALT=1;ODDS=5.04564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235473;QR=77394;RO=2167;RPL=0;RPP=14326;RPPR=4708.59;RPR=6596;RUN=1;SAF=0;SAP=14326;SAR=6596;SRF=0;SRP=4708.59;SRR=2167;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:93:44,49:44:1565:49:1748:-129.608,0,-113.144	1/1:73:0,73:0:0:73:2596:-233.89,-21.9752,0	1/1:168:1,167:1:36:167:5976:-534.308,-46.9748,0	0/1:272:107,165:107:3821:165:5876:-447.075,0,-262.204	0/1:54:35,19:35:1243:19:676:-44.9124,0,-95.9182	0/1:42:18,24:18:644:24:856:-64.7178,0,-45.6473	0/1:40:21,19:21:748:19:680:-49.488,0,-55.6041	1/1:160:2,158:2:72:158:5626:-499.627,-41.3281,0	0/1:135:78,57:78:2789:57:2040:-143.233,0,-210.581	0/1:77:46,31:46:1652:31:1112:-77.212,0,-125.789	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:87:51,36:51:1824:36:1292:-90.3932,0,-138.251	1/1:70:0,70:0:0:70:2503:-225.522,-21.0721,0	1/1:43:0,43:0:0:43:1532:-138.173,-12.9443,0	1/1:68:0,68:0:0:68:2434:-219.316,-20.47,0	0/1:57:29,28:29:1044:28:1000:-73.1567,0,-77.1161	1/1:26:0,26:0:0:26:926:-83.6577,-7.82678,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:26:12,14:12:424:14:496:-37.1475,0,-30.6696	0/1:172:79,93:79:2814:93:3320:-247.241,0,-201.722	0/1:141:74,67:74:2643:67:2396:-173.444,0,-195.671	1/1:126:0,126:0:0:126:4512:-406.248,-37.9298,0	1/1:134:0,134:0:0:134:4765:-429.009,-40.338,0	1/1:50:2,48:2:72:48:1708:-147.169,-8.21478,0	0/1:90:64,25:64:2287:25:888:-53.0877,0,-178.94	1/1:261:0,261:0:0:261:9330:-839.667,-78.5688,0	0/1:224:107,117:107:3836:117:4169:-307.958,0,-278.005	0/1:29:12,17:12:428:17:604:-45.9607,0,-30.1289	1/1:319:1,318:1:36:318:11355:-1016.94,-92.4303,0	0/1:107:60,47:60:2148:47:1673:-118.645,0,-161.377	1/1:77:0,77:0:0:77:2746:-247.36,-23.1793,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:13:0,13:0:0:13:468:-42.4032,-3.91339,0	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	1/1:164:0,164:0:0:164:5860:-527.512,-49.3689,0	0/1:175:91,84:91:3255:84:2995:-216.911,0,-240.49	0/1:37:19,18:19:671:18:648:-47.5138,0,-49.5777	0/1:6:3,3:3:108:3:96:-7.1519,0,-8.26899	1/1:177:6,171:6:207:171:6101:-530.225,-34.3154,0	0/1:32:16,16:16:568:16:559:-40.9909,0,-41.8189	0/1:142:73,69:73:2615:69:2461:-178.997,0,-192.851	0/1:38:22,16:22:788:16:572:-40.3743,0,-59.8057	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:155:99,56:99:3526:56:2004:-133.974,0,-270.888	1/1:158:0,158:0:0:158:5664:-509.861,-47.5627,0	1/1:177:0,177:0:0:177:6333:-570.06,-53.2823,0	0/1:110:66,44:66:2364:44:1550:-106.674,0,-179.905	0/1:124:68,56:68:2436:56:2000:-142.946,0,-182.168	0/1:110:59,51:59:2101:51:1828:-131.688,0,-156.244	0/1:19:7,12:7:237:12:432:-33.5016,0,-15.9395	0/1:121:54,67:54:1932:67:2396:-179.473,0,-137.732	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:156:0,156:0:0:156:5554:-499.973,-46.9607,0	0/1:55:26,29:26:905:29:1036:-76.9906,0,-65.2059	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:46:26,20:26:927:20:716:-50.9203,0,-69.9	1/1:106:0,106:0:0:106:3779:-340.31,-31.9092,0	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:243:126,117:126:4502:117:4188:-303.951,0,-332.198	1/1:141:0,141:0:0:141:5037:-453.475,-42.4452,0	0/1:83:46,37:46:1648:37:1328:-94.8367,0,-123.623	1/1:108:0,108:0:0:108:3872:-348.674,-32.5112,0	0/1:171:89,82:89:3177:82:2940:-213.357,0,-234.659	1/1:128:1,127:1:32:127:4523:-404.039,-35.3325,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:74:34,40:34:1212:40:1418:-105.641,0,-87.1101	1/1:42:0,42:0:0:42:1492:-134.543,-12.6433,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:128:0,128:0:0:128:4549:-409.578,-38.5318,0	1/1:127:0,127:0:0:127:4556:-410.191,-38.2308,0	1/1:201:0,201:0:0:201:7154:-643.904,-60.507,0	1/1:227:0,227:0:0:227:8108:-729.74,-68.3338,0	0/1:80:54,26:54:1936:26:932:-60.1165,0,-150.434	0/1:93:49,44:49:1760:44:1557:-112.424,0,-130.688	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:120:0,120:0:0:120:4269:-384.389,-36.1236,0	0/1:136:58,78:58:2071:78:2784:-209.861,0,-145.72	1/1:173:0,173:0:0:173:6157:-554.127,-52.0782,0	1/1:56:0,56:0:0:56:1999:-180.183,-16.8577,0	1/1:79:0,79:0:0:79:2799:-252.151,-23.7814,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:107:48,59:48:1716:59:2107:-157.688,0,-122.515	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:57:36,21:36:1292:21:743:-50.0346,0,-99.4251	0/1:86:36,50:36:1275:50:1788:-135.314,0,-89.1637	0/1:26:13,13:13:464:13:460:-33.9086,0,-34.2707	0/1:87:40,47:40:1436:47:1683:-125.559,0,-103.348	0/1:56:33,23:33:1175:23:824:-57.6252,0,-89.1993	1/1:155:0,155:0:0:155:5544:-499.085,-46.6597,0	1/1:81:0,81:0:0:81:2891:-260.426,-24.3834,0
chr10	7074962	.	C	G	76482.5	PASS	AB=0.511801;ABP=5.93167;AC=140;AF=0.744681;AN=188;AO=3720;CIGAR=1X;DP=4905;DPB=4905;DPRA=0;EPP=8002.9;EPPR=2502.84;GTI=0;LEN=1;MEANALT=1.02128;MQM=47.1573;MQMR=59.3221;NS=94;NUMALT=1;ODDS=0.600305;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132040;QR=42180;RO=1183;RPL=9;RPP=8002.9;RPPR=2502.84;RPR=3711;RUN=1;SAF=0;SAP=8080.89;SAR=3720;SRF=0;SRP=2571.86;SRR=1183;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:7,3:7:252:3:108:-6.89084,0,-20.0187	1/1:82:1,81:1:36:81:2884:-250.899,-21.0862,0	1/1:66:0,66:0:0:66:2355:-206.84,-19.868,0	0/1:129:76,53:76:2728:53:1875:-128.485,0,-206.795	0/1:28:12,16:12:432:16:568:-42.6291,0,-30.7924	0/1:13:3,10:3:108:10:356:-27.9918,0,-6.16178	0/1:100:57,43:57:2043:43:1522:-106.462,0,-154.001	1/1:44:0,43:0:0:43:1531:-135.425,-12.9443,0	0/1:39:24,15:24:860:15:540:-35.7141,0,-65.901	0/1:89:46,43:46:1637:43:1501:-107.293,0,-120.783	1/1:33:0,33:0:0:33:1180:-105.932,-9.93399,0	0/1:41:24,17:24:847:17:600:-40.6907,0,-64.1927	1/1:36:0,36:0:0:36:1288:-113.501,-10.8371,0	1/1:40:0,40:0:0:40:1409:-125.611,-12.0412,0	1/1:19:0,19:0:0:19:656:-58.6386,-5.71957,0	0/1:25:15,10:15:512:10:341:-23.2429,0,-38.5036	1/1:42:0,42:0:0:42:1449:-128.453,-12.6433,0	1/1:36:0,36:0:0:36:1271:-112.857,-10.8371,0	0/1:24:12,12:12:432:12:419:-29.8477,0,-31.94	0/1:90:43,46:43:1529:46:1616:-117.718,0,-110.734	0/1:90:49,41:49:1752:41:1457:-102.818,0,-130.473	1/1:58:0,58:0:0:58:2067:-184.889,-17.4597,0	1/1:18:0,18:0:0:18:648:-58.0283,-5.41854,0	1/1:75:1,74:1:36:74:2621:-228.869,-18.9807,0	0/1:42:15,27:15:525:27:968:-74.0155,0,-34.9012	1/1:132:1,131:1:36:131:4667:-413.41,-36.1377,0	0/1:110:54,56:54:1913:56:1985:-143.892,0,-139.304	0/1:18:12,6:12:424:6:216:-14.1989,0,-33.0662	1/1:139:0,139:0:0:139:4927:-440.687,-41.8432,0	0/1:86:38,48:38:1351:48:1708:-125.838,0,-95.9573	1/1:70:0,70:0:0:70:2474:-219.968,-21.0721,0	1/1:1:0,1:0:0:1:36:-3.56681,-0.30103,0	0/1:7:3,4:3:104:4:144:-11.09,0,-7.59369	1/1:3:0,3:0:0:3:108:-9.90114,-0.90309,0	1/1:8:0,8:0:0:8:280:-25.1518,-2.40824,0	1/1:4:0,4:0:0:4:144:-13.0837,-1.20412,0	1/1:113:0,113:0:0:113:4038:-361.839,-34.0164,0	0/1:128:59,69:59:2099:69:2468:-180.23,0,-150.558	0/1:48:20,28:20:720:28:1000:-74.3703,0,-50.3476	0/1:3:2,1:2:72:1:32:-2.2834,0,-5.93363	1/1:91:0,91:0:0:91:3212:-285.947,-27.3937,0	1/1:25:0,25:0:0:25:892:-79.7579,-7.52575,0	0/1:54:26,28:26:927:28:996:-72.6112,0,-67.4349	0/1:31:16,15:16:572:15:540:-39.3296,0,-42.4815	1/1:31:0,31:0:0:31:1112:-99.5952,-9.33193,0	0/1:35:14,21:14:504:21:728:-54.9167,0,-35.1406	1/1:50:0,50:0:0:50:1781:-157.01,-15.0515,0	1/1:94:1,93:1:36:93:3289:-288.861,-24.6985,0	0/1:79:39,40:39:1404:40:1415:-103.168,0,-102.858	0/1:61:35,26:35:1260:26:906:-62.7433,0,-95.1524	0/1:104:53,51:53:1892:51:1832:-132.967,0,-139.212	0/1:5:3,2:3:108:2:72:-5.29451,0,-8.57002	0/1:73:23,50:23:820:50:1796:-135.483,0,-51.9944	0/1:35:23,12:23:820:12:417:-27.0253,0,-63.5803	1/1:7:0,7:0:0:7:252:-22.6312,-2.10721,0	1/1:72:0,72:0:0:72:2576:-228.592,-21.6742,0	0/1:14:4,10:4:144:10:345:-27.0455,0,-9.08115	1/1:4:0,4:0:0:4:144:-13.1479,-1.20412,0	0/1:14:6,8:6:216:8:273:-20.6031,0,-15.5761	0/1:51:25,26:25:896:26:928:-67.6181,0,-65.5794	1/1:83:0,83:0:0:83:2955:-263.113,-24.9855,0	0/1:2:1,1:1:36:1:36:-2.97671,0,-2.99621	0/1:118:52,66:52:1856:66:2352:-175.682,0,-131.798	1/1:111:0,111:0:0:111:3949:-353.21,-33.4143,0	0/1:62:29,33:29:1044:33:1188:-86.8869,0,-75.5825	1/1:38:0,38:0:0:38:1351:-120.886,-11.4391,0	0/1:81:41,40:41:1476:40:1408:-101.318,0,-108.732	1/1:83:0,83:0:0:83:2952:-262.079,-24.9855,0	0/1:15:5,10:5:180:10:347:-26.8071,0,-12.0053	0/1:37:18,19:18:635:19:684:-49.6093,0,-46.3383	1/1:62:0,62:0:0:62:2161:-193.751,-18.6639,0	1/1:21:0,21:0:0:21:756:-67.7327,-6.32163,0	1/1:79:0,79:0:0:79:2819:-249.703,-23.7814,0	1/1:29:0,29:0:0:29:1034:-91.4182,-8.72987,0	1/1:94:0,94:0:0:94:3328:-295.763,-28.2968,0	1/1:59:0,59:0:0:59:2111:-188.366,-17.7608,0	0/1:30:14,16:14:504:16:576:-41.4487,0,-36.6672	0/1:59:25,34:25:864:34:1220:-90.4609,0,-60.288	1/1:7:0,7:0:0:7:252:-22.3126,-2.10721,0	1/1:52:1,51:1:36:51:1817:-158.73,-12.0553,0	0/1:39:12,27:12:424:27:935:-71.4635,0,-26.7559	1/1:130:0,130:0:0:130:4640:-413.537,-39.1339,0	1/1:61:0,61:0:0:61:2156:-192.031,-18.3628,0	1/1:35:0,35:0:0:35:1252:-111.88,-10.5361,0	1/1:42:0,42:0:0:42:1461:-130.589,-12.6433,0	0/1:72:36,36:36:1283:36:1252:-90.4646,0,-94.0951	0/1:20:10,10:10:356:10:348:-25.168,0,-26.3597	0/1:40:19,21:19:672:21:739:-53.5391,0,-48.761	0/1:26:7,19:7:252:19:680:-50.9178,0,-14.5048	0/1:31:13,18:13:452:18:639:-47.9564,0,-31.6792	0/1:74:36,38:36:1284:38:1351:-98.215,0,-93.5588	0/1:33:22,11:22:779:11:383:-24.6893,0,-60.48	1/1:51:0,51:0:0:51:1824:-162.999,-15.3525,0	1/1:60:0,60:0:0:60:2121:-189.757,-18.0618,0
chr10	7399476	.	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chr10	7677180	.	C	G	30828.3	PASS	AB=0.291656;ABP=3066.75;AC=77;AF=0.409574;AN=188;AO=2412;CIGAR=1X;DP=8813;DPB=8813;DPRA=7.71055;EPP=5042.73;EPPR=13753;GTI=19;LEN=1;MEANALT=1.13095;MQM=59.9614;MQMR=56.0758;NS=94;NUMALT=1;ODDS=0.479212;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86248;QR=228505;RO=6388;RPL=23;RPP=5042.73;RPPR=13753;RPR=2389;RUN=1;SAF=2412;SAP=5240.6;SAR=0;SRF=6388;SRP=13874.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:455:0:0:0,-3.91339,-38.9226	0/1:118:100,18:100:3592:18:633:-21.7735,0,-287.964	0/1:139:116,22:116:4152:22:792:-29.7037,0,-331.958	0/1:78:61,15:61:2179:15:532:-25.0391,0,-168.88	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0039	0/0:39:36,3:36:1288:3:108:0,-1.665,-71.7597	0/1:76:69,7:69:2484:7:252:-0.150681,0,-198.861	0/1:154:135,18:135:4826:18:644:-11.8034,0,-385.914	0/1:29:26,3:26:928:3:104:-0.972935,0,-56.5431	0/1:42:37,4:37:1319:4:140:-0.292412,0,-102.212	0/1:170:81,89:81:2896:89:3204:-237.407,0,-209.701	0/1:109:63,46:63:2260:46:1648:-115.796,0,-113.429	0/1:133:71,62:71:2541:62:2232:-161.107,0,-188.902	0/1:232:114,118:114:4085:118:4212:-309.412,0,-297.99	0/1:91:47,44:47:1692:44:1572:-114.355,0,-125.173	0/1:55:27,28:27:964:28:1004:-74.1192,0,-61.7537	0/1:139:66,73:66:2372:73:2586:-191.144,0,-171.895	0/1:93:47,46:47:1688:46:1652:-120.903,0,-124.211	0/1:57:44,13:44:1563:13:464:-24.9388,0,-73.0009	0/1:78:66,12:66:2372:12:432:-15.7409,0,-186.105	0/1:56:48,8:48:1708:8:288:-9.40973,0,-135.43	0/1:118:99,19:99:3526:19:684:-26.3688,0,-282.027	0/1:22:17,5:17:604:5:180:-9.9294,0,-48.0679	0/1:98:82,16:82:2915:16:572:-22.3125,0,-226.684	0/1:41:34,7:34:1216:7:237:-9.31683,0,-88.284	0/1:325:263,62:263:9399:62:2228:-102.949,0,-748.037	0/1:122:108,14:108:3844:14:504:-8.97243,0,-287.354	0/1:25:15,10:15:536:10:356:-24.8555,0,-34.4299	0/1:264:215,49:215:7707:49:1745:-77.8604,0,-614.19	0/1:104:90,14:90:3223:14:504:-14.391,0,-245.29	0/1:75:58,17:58:2079:17:612:-32.8362,0,-164.802	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:11:8,3:8:288:3:108:-6.76384,0,-16.2951	0/1:316:172,144:172:6172:144:5164:-369.774,0,-460.43	0/1:109:92,17:92:3251:17:612:-22.6012,0,-241.886	0/1:76:55,21:55:1972:21:756:-45.4889,0,-104.739	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:149:121,26:121:4293:26:936:-39.9482,0,-341.938	0/1:65:30,35:30:1080:35:1260:-94.1385,0,-77.9463	0/0:48:48,0:48:1704:0:0:0,-14.4494,-140.387	0/1:38:22,16:22:779:16:568:-39.9533,0,-50.8453	0/1:100:47,53:47:1675:53:1874:-138.834,0,-120.933	0/1:37:30,7:30:1076:7:252:-11.8908,0,-86.0147	0/1:123:104,18:104:3723:18:644:-21.2052,0,-297.469	0/1:170:132,38:132:4721:38:1354:-70.9845,0,-371.801	0/1:70:56,14:56:2008:14:504:-24.626,0,-155.852	0/1:50:40,10:40:1417:10:352:-16.9667,0,-110.695	0/0:112:102,10:102:3638:10:360:0,-0.971057,-290.376	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/0:115:107,8:107:3844:8:273:0,-9.7173,-208.475	0/0:28:26,2:26:932:2:68:0,-1.97113,-75.572	0/1:25:10,15:10:360:15:536:-41.0491,0,-25.2186	0/1:144:107,36:107:3811:36:1283:-72.4239,0,-299.84	0/0:8:8,0:8:288:0:0:0,-2.40824,-24.1683	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:19:14,5:14:496:5:180:-10.8325,0,-39.2541	0/0:44:40,3:40:1432:3:108:0,-3.22895,-107.644	0/1:284:157,127:157:5631:127:4553:-324.441,0,-421.416	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:66:60,6:60:2160:6:216:0,-0.077467,-172.8	0/1:231:185,46:185:6620:46:1652:-79.4305,0,-526.34	0/1:72:65,7:65:2324:7:252:-1.3548,0,-165.659	0/1:81:65,16:65:2290:16:576:-27.7916,0,-181.978	0/1:73:57,16:57:2028:16:561:-28.8419,0,-160.817	0/1:93:84,9:84:3012:9:320:-1.14657,0,-243.315	0/1:38:23,15:23:828:15:536:-37.1357,0,-56.3531	0/1:105:94,11:94:3364:11:396:-4.3746,0,-170.106	0/1:235:121,113:121:4348:113:4052:-294.066,0,-320.692	0/1:47:41,6:41:1472:6:216:-5.6421,0,-118.628	0/1:173:131,42:131:4691:42:1508:-83.9364,0,-368.108	0/1:69:59,10:59:2112:10:360:-11.9732,0,-169.577	0/1:145:112,33:112:4008:33:1162:-61.2366,0,-317.26	0/1:154:117,37:117:4204:37:1324:-73.1035,0,-332.179	0/0:149:139,10:139:4975:10:356:0,-12.4722,-274.749	0/1:100:87,13:87:3124:13:468:-12.3566,0,-150.44	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:117:98,19:98:3507:19:672:-25.585,0,-280.619	0/1:91:82,9:82:2935:9:320:-1.74863,0,-149.232	0/1:202:175,27:175:6271:27:953:-25.2753,0,-503.671	0/1:182:99,83:99:3551:83:2946:-210.581,0,-265.008	0/1:146:87,58:87:3104:58:2084:-143.821,0,-233.414	0/1:108:52,56:52:1838:56:2004:-148.122,0,-133.184	0/1:118:65,52:65:2336:52:1853:-131.546,0,-174.995	0/1:52:31,21:31:1101:21:756:-52.7137,0,-48.5291	0/1:94:69,25:69:2472:25:896:-52.6635,0,-143.957	0/1:82:55,27:55:1980:27:968:-62.7529,0,-87.945	0/1:71:43,28:43:1533:28:1004:-69.3027,0,-106.757	0/1:159:91,68:91:3245:68:2423:-170.46,0,-221.883	0/1:39:19,20:19:684:20:720:-53.3886,0,-45.5321	0/1:54:43,11:43:1532:11:396:-19.7271,0,-121.917	0/1:142:82,60:82:2948:60:2148:-150.841,0,-222.807
chr10	7677183	.	CAT	TAT	108432	PASS	AB=0.692136;ABP=2592.27;AC=106;AF=0.56383;AN=188;AO=5772;CIGAR=1X2M;DP=8267;DPB=8269;DPRA=0;EPP=12536.7;EPPR=5308.14;GTI=21;LEN=1;MEANALT=1.19149;MQM=59.9338;MQMR=59.9164;NS=94;NUMALT=1;ODDS=0.46125;PAIRED=0;PAIREDR=0;PAO=3;PQA=108;PQR=0;PRO=0;QA=206273;QR=87259;RO=2475;RPL=5772;RPP=12536.7;RPPR=5308.14;RPR=0;RUN=1;SAF=5772;SAP=12536.7;SAR=0;SRF=2475;SRP=5377.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:117:19,98:19:648:98:3517:-281.518,0,-23.4162	0/1:135:22,112:22:790:112:4000:-319.488,0,-30.7277	0/1:74:16,58:16:543:58:2051:-162.546,0,-26.9138	1/1:20:0,17:0:0:17:612:-55.0762,-5.11751,0	0/1:23:3,20:3:106:20:720:-58.2051,0,-2.96541	0/1:74:7,67:7:252:67:2396:-193.621,0,-0.752739	0/1:149:18,131:18:630:131:4684:-376.804,0,-12.0437	0/1:20:3,17:3:100:17:600:-48.1783,0,-3.30926	0/1:39:5,34:5:180:34:1203:-96.8341,0,-4.81189	0/1:171:91,80:91:3254:80:2863:-206.431,0,-241.605	0/1:85:47,38:47:1680:38:1348:-96.0273,0,-125.9	0/1:134:63,71:63:2240:71:2552:-189.592,0,-161.525	0/1:235:121,114:121:4230:114:4079:-296.549,0,-310.139	0/1:93:46,47:46:1620:47:1684:-123.851,0,-118.068	0/1:52:29,23:29:1027:23:828:-59.1906,0,-77.0875	0/1:141:75,65:75:2661:65:2321:-166.703,0,-197.289	0/1:95:48,46:48:1716:46:1656:-120.672,0,-126	0/1:37:14,23:14:502:23:828:-63.706,0,-34.3684	0/1:78:14,64:14:482:64:2276:-181.621,0,-20.2258	0/1:55:9,46:9:311:46:1629:-130.34,0,-11.7674	0/1:118:21,96:21:742:96:3420:-272.432,0,-31.5241	0/1:21:5,16:5:169:16:572:-45.4918,0,-9.22041	0/1:91:16,75:16:572:75:2692:-215.13,0,-24.4199	0/1:33:7,26:7:240:26:921:-73.2689,0,-12.0003	0/1:323:64,259:64:2245:259:9289:-738.742,0,-105.078	0/1:108:14,94:14:500:94:3372:-271.182,0,-12.8251	0/1:22:10,12:10:355:12:432:-32.5985,0,-25.6677	0/1:260:49,210:49:1702:210:7523:-598.784,0,-75.1346	0/1:96:14,82:14:481:82:2898:-232.097,0,-14.6597	0/1:73:17,56:17:610:56:2008:-159.018,0,-33.2576	0/1:6:2,4:2:70:4:140:-11.1384,0,-4.84115	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	0/1:10:5,5:5:164:5:180:-13.5418,0,-9.13345	0/1:318:149,169:149:5239:169:6035:-447.525,0,-375.91	0/1:100:17,82:17:610:82:2914:-232.332,0,-25.0711	0/1:56:23,33:23:777:33:1172:-88.9289,0,-53.3834	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:147:27,119:27:945:119:4252:-338.659,0,-41.1594	0/1:65:35,30:35:1238:30:1080:-77.9463,0,-92.1566	1/1:43:0,42:0:0:42:1498:-134.99,-12.6433,0	0/1:33:17,16:17:601:16:567:-41.4267,0,-44.4475	0/1:101:54,46:54:1903:46:1648:-118.273,0,-141.211	0/1:34:7,27:7:248:27:972:-77.5629,0,-12.4294	0/1:122:18,103:18:634:103:3685:-294.87,0,-20.7068	0/1:170:37,133:37:1278:133:4753:-376.422,0,-64.0831	0/1:68:14,54:14:499:54:1933:-153.766,0,-24.7755	0/1:50:12,38:12:419:38:1355:-107.196,0,-22.9913	0/1:107:10,97:10:358:97:3453:-278.772,0,-0.352671	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	0/1:66:9,57:9:309:57:2048:-164.717,0,-8.27328	1/1:27:2,25:2:72:25:896:-74.1236,-1.29109,0	0/1:25:15,10:15:511:10:360:-25.2186,0,-38.7852	0/1:141:37,104:37:1318:104:3716:-292.194,0,-76.4764	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:20:5,15:5:178:15:536:-42.5527,0,-10.348	1/1:40:3,37:3:103:37:1324:-109.852,-2.4316,0	0/1:280:128,151:128:4532:151:5428:-404.3,0,-323.701	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:63:6,57:6:214:57:2036:-164.486,0,-0.592718	0/1:230:48,182:48:1704:182:6495:-515.398,0,-84.4083	0/1:61:7,54:7:243:54:1940:-156.513,0,-3.8453	0/1:81:17,64:17:588:64:2296:-182.518,0,-28.8598	0/1:71:18,53:18:635:53:1888:-148.824,0,-36.1035	0/1:94:10,84:10:338:84:3004:-242.295,0,-2.45011	0/1:35:16,19:16:572:19:680:-50.9931,0,-41.2776	0/1:59:11,48:11:396:48:1720:-137.263,0,-18.1673	0/1:237:115,122:115:4088:122:4363:-321.499,0,-296.764	0/1:46:6,40:6:216:40:1424:-114.609,0,-5.94313	0/1:172:42,129:42:1450:129:4628:-364.894,0,-79.0034	0/1:68:10,58:10:360:58:2061:-165.288,0,-12.2743	0/1:143:33,110:33:1149:110:3924:-310.307,0,-60.666	0/1:154:37,117:37:1310:117:4188:-330.742,0,-71.8424	0/1:87:10,77:10:340:77:2737:-220.276,0,-4.738	0/1:57:13,44:13:468:44:1558:-123.079,0,-25.3009	1/1:9:0,9:0:0:9:294:-26.7756,-2.70927,0	0/1:115:19,96:19:670:96:3444:-275.554,0,-26.0074	0/1:51:9,42:9:312:42:1482:-118.32,0,-13.0625	0/1:199:28,171:28:967:171:6103:-489.402,0,-27.3747	0/1:183:86,96:86:3047:96:3429:-253.823,0,-219.458	0/1:145:58,87:58:2052:87:3101:-235.667,0,-141.301	0/1:108:57,50:57:2013:50:1779:-127.842,0,-148.891	0/1:118:54,64:54:1914:64:2296:-171.377,0,-137.014	0/1:37:24,13:24:854:13:468:-31.3215,0,-66.0422	0/1:70:25,44:25:881:44:1563:-119.899,0,-58.5537	0/1:55:28,26:28:996:26:925:-66.6801,0,-73.3392	0/1:66:28,38:28:987:38:1364:-103.193,0,-69.2749	0/1:147:69,78:69:2438:78:2795:-207.538,0,-175.423	0/1:36:20,15:20:698:15:540:-38.0383,0,-52.247	0/1:56:11,45:11:364:45:1604:-127.792,0,-16.2213	0/1:142:61,81:61:2185:81:2897:-218.218,0,-154.17
chr10	7680431	.	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chr10	7995882	.	AAGAA	TAGAA	105380	PASS	AB=0.537236;ABP=40.0426;AC=139;AF=0.739362;AN=188;AO=4972;CIGAR=1X4M;DP=6423;DPB=6423;DPRA=34.5215;EPP=10782.2;EPPR=3088.67;GTI=2;LEN=1;MEANALT=1.25806;MQM=59.965;MQMR=59.981;NS=94;NUMALT=1;ODDS=0.259478;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177920;QR=50224;RO=1421;RPL=2;RPP=10782.2;RPPR=3088.67;RPR=4970;RUN=1;SAF=4972;SAP=10799.6;SAR=0;SRF=1421;SRP=3088.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:38:0,38:0:0:38:1352:-121.708,-11.4391,0	1/1:110:0,110:0:0:110:3917:-352.721,-33.1133,0	0/1:211:94,116:94:3302:116:4148:-309.656,0,-233.826	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:32:19,13:19:683:13:468:-32.8267,0,-52.159	0/1:59:34,25:34:1212:25:900:-63.5602,0,-91.6263	1/1:85:0,85:0:0:85:3037:-273.559,-25.5876,0	0/1:94:37,56:37:1305:56:1997:-151.686,0,-89.434	0/1:103:52,51:52:1840:51:1794:-130.732,0,-134.874	1/1:34:0,34:0:0:34:1224:-110.453,-10.235,0	0/1:87:38,48:38:1361:48:1724:-129.197,0,-96.5426	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	0/1:35:16,19:16:571:19:684:-51.3543,0,-41.1872	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:25:13,11:13:465:11:396:-28.4256,0,-34.6315	0/1:142:67,74:67:2371:74:2652:-196.19,0,-170.913	0/1:129:62,66:62:2176:66:2364:-174.235,0,-157.325	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:51:1,50:1:36:50:1788:-157.604,-11.7543,0	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.6223	0/1:29:13,16:13:466:16:572:-43.0836,0,-33.5489	1/1:181:0,179:0:0:179:6405:-576.177,-53.8844,0	0/1:161:73,88:73:2562:88:3143:-234.63,0,-182.366	0/1:26:8,18:8:287:18:644:-50.4638,0,-18.3497	1/1:257:0,256:0:0:256:9189:-826.685,-77.0637,0	0/1:113:38,75:38:1336:75:2688:-208.148,0,-86.5216	1/1:77:1,72:1:24:72:2550:-227.269,-19.8348,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:165:0,164:0:0:164:5890:-529.847,-49.3689,0	0/1:48:22,26:22:784:26:932:-69.7494,0,-56.4348	0/1:32:18,14:18:625:14:504:-36.0651,0,-46.941	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:137:0,137:0:0:137:4870:-438.445,-41.2411,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:64:28,36:28:995:36:1284:-96.5975,0,-70.5992	0/1:49:26,22:26:916:22:792:-56.8346,0,-67.9796	1/1:59:0,59:0:0:59:2108:-189.972,-17.7608,0	0/1:63:22,41:22:767:41:1472:-113.811,0,-50.385	1/1:81:0,81:0:0:81:2912:-262.313,-24.3834,0	1/1:96:0,96:0:0:96:3448:-310.532,-28.8989,0	0/1:67:33,34:33:1154:34:1220:-89.9378,0,-83.9963	0/1:104:47,57:47:1654:57:2044:-152.925,0,-117.839	0/1:64:33,31:33:1163:31:1108:-80.7651,0,-85.7104	0/1:12:7,5:7:250:5:180:-12.9397,0,-19.2344	0/1:65:30,35:30:1060:35:1260:-94.1385,0,-76.1449	0/1:53:19,34:19:671:34:1216:-93.792,0,-44.7623	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:159:0,159:0:0:159:5696:-512.758,-47.8638,0	0/1:15:7,8:7:246:8:288:-21.752,0,-17.9663	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:7:4,3:4:141:3:104:-7.5956,0,-10.9297	0/1:64:30,33:30:1067:33:1188:-87.9039,0,-77.0175	1/1:66:3,63:3:108:63:2268:-194.307,-9.79281,0	0/1:4:2,2:2:69:2:72:-5.6326,0,-5.34842	0/1:255:140,115:140:4960:115:4098:-292.241,0,-369.792	1/1:142:0,140:0:0:140:5005:-450.238,-42.1442,0	0/1:62:25,37:25:893:37:1324:-100.798,0,-62.0258	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	0/1:110:45,64:45:1572:64:2292:-173.389,0,-108.617	1/1:107:1,104:1:36:104:3721:-331.491,-28.3697,0	0/1:44:13,31:13:464:31:1112:-87.146,0,-28.8522	0/1:17:11,6:11:395:6:216:-14.673,0,-30.7747	1/1:33:0,31:0:0:31:1116:-100.392,-9.33193,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:128:0,128:0:0:128:4569:-411.375,-38.5318,0	1/1:90:0,90:0:0:90:3185:-286.871,-27.0927,0	1/1:128:0,127:0:0:127:4537:-408.136,-38.2308,0	1/1:134:0,132:0:0:132:4732:-425.703,-39.736,0	0/1:30:16,14:16:566:14:500:-36.2177,0,-42.2403	0/1:85:32,53:32:1128:53:1892:-144.971,0,-76.2398	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:71:0,70:0:0:70:2473:-222.462,-21.0721,0	0/1:87:31,55:31:1092:55:1953:-149.796,0,-72.3408	1/1:99:0,99:0:0:99:3552:-319.888,-29.802,0	1/1:52:0,51:0:0:51:1821:-163.789,-15.3525,0	1/1:56:0,56:0:0:56:1993:-179.638,-16.8577,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	0/1:128:56,72:56:1994:72:2570:-193.017,0,-141.202	0/1:19:7,12:7:252:12:428:-33.1392,0,-17.3094	0/1:69:32,37:32:1141:37:1328:-99.0512,0,-82.2283	0/1:65:39,25:39:1382:25:900:-61.6953,0,-105.054	0/1:17:9,8:9:297:8:288:-21.1499,0,-21.9328	0/1:47:19,28:19:670:28:1008:-76.8879,0,-46.4778	0/1:60:39,21:39:1396:21:748:-49.5835,0,-107.878	1/1:118:0,118:0:0:118:4242:-381.958,-35.5215,0	1/1:85:1,84:1:31:84:3017:-268.661,-22.4881,0
chr10	8538770	.	TTCAAGT	GTCAAGC,ATCAAGT	110381	PASS	AB=0.52715,0.467301;ABP=19.1642,26.4421;AC=142,46;AF=0.755319,0.244681;AN=188;AO=3973,1186;CIGAR=1X5M1X,1X6M;DP=5199;DPB=5204.29;DPRA=0,1.03094;EPP=8630.27,2578.38;EPPR=5.18177;GTI=3;LEN=7,1;MEANALT=1.91489,2.27451;MQM=58.0156,59.9494;MQMR=60;NS=94;NUMALT=2;ODDS=0.104608;PAIRED=0,0;PAIREDR=0;PAO=15.5,2;PQA=519,63;PQR=0;PRO=5;QA=141258,42459;QR=36;RO=1;RPL=3973,1186;RPP=8630.27,2578.38;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8630.27,2578.38;SAR=3973,1186;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:29:0,19,8:0:0:19,8:662,288:-77.4067,-23.5832,-17.8637,-53.9016,0,-51.4934	1/1:132:0,132,0:0:0:132,0:4716,0:-424.409,-39.736,0,-424.409,-39.736,-424.409	1/1:114:0,114,0:0:0:114,0:4056,0:-365.061,-34.3174,0,-365.061,-34.3174,-365.061	1/2:144:0,50,93:0:0:50,93:1780,3329:-416.37,-271.352,-256.3,-144.898,0,-116.902	1/2:40:0,32,8:0:0:32,8:1144,288:-117.042,-23.7657,-14.1327,-93.54,0,-91.1317	1/2:28:0,24,4:0:0:24,4:841,144:-80.502,-12.1095,-4.88478,-68.751,0,-67.5468	1/2:53:0,33,20:0:0:33,20:1175,714:-154.037,-58.5661,-48.6321,-95.8266,0,-89.806	1/1:88:0,87,0:0:0:87,0:3089,0:-277.835,-26.1896,0,-277.835,-26.1896,-277.835	1/2:73:0,40,33:0:0:40,33:1404,1188:-211.443,-97.2359,-85.1947,-114.505,0,-104.571	1/2:49:0,28,21:0:0:28,21:993,756:-142.917,-62.0456,-53.6168,-81.2286,0,-74.907	1/1:37:0,36,1:0:0:36,1:1292,36:-116.186,-10.8371,0,-113.249,-7.53984,-112.948	1/2:79:0,33,46:0:0:33,46:1188,1656:-232.327,-135.481,-125.547,-97.2052,0,-83.3578	1/1:66:0,63,0:0:0:63,0:2260,0:-203.304,-18.9649,0,-203.304,-18.9649,-203.304	1/1:39:0,39,0:0:0:39,0:1392,0:-125.44,-11.7402,0,-125.44,-11.7402,-125.44	1/1:67:0,67,0:0:0:67,0:2396,0:-215.836,-20.169,0,-215.836,-20.169,-215.836	1/2:38:0,22,16:0:0:22,16:788,576:-111.603,-47.3585,-40.7358,-64.6034,0,-59.7869	1/1:26:0,26,0:0:0:26,0:928,0:-83.7592,-7.82678,0,-83.7592,-7.82678,-83.7592	1/1:29:0,28,0:0:0:28,0:995,0:-89.1844,-8.42884,0,-89.1844,-8.42884,-89.1844	1/2:28:0,16,11:0:0:16,11:576,381:-77.9471,-30.9507,-26.1342,-46.9893,0,-43.678	1/2:57:0,23,34:0:0:23,34:824,1224:-167.389,-100.232,-93.3083,-67.5158,0,-57.2807	1/2:101:0,60,41:0:0:60,41:2103,1468:-291.139,-120.074,-102.012,-171.42,0,-159.078	1/1:25:0,25,0:0:0:25,0:877,0:-79.1573,-7.52575,0,-79.1573,-7.52575,-79.1573	1/1:88:0,87,1:0:0:87,1:3079,36:-276.764,-26.1896,0,-273.826,-22.8924,-273.525	1/1:36:0,34,2:0:0:34,2:1197,72:-107.435,-10.235,0,-101.559,-4.00036,-100.957	1/2:40:0,16,23:0:0:16,23:572,828:-114.186,-67.561,-62.7445,-46.6241,0,-39.7004	1/1:92:0,92,0:0:0:92,0:3269,0:-294.277,-27.6948,0,-294.277,-27.6948,-294.277	1/2:124:0,52,71:0:0:52,71:1842,2537:-356.868,-206.865,-191.212,-150.018,0,-128.645	1/2:32:0,19,13:0:0:19,13:676,468:-93.6182,-38.5463,-32.8267,-55.43,0,-51.5167	1/1:96:0,95,0:0:0:95,0:3389,0:-304.318,-28.5979,0,-304.318,-28.5979,-304.318	1/2:106:0,71,35:0:0:71,35:2525,1256:-308.426,-102.751,-81.3776,-205.974,0,-195.438	1/1:77:0,76,0:0:0:76,0:2717,0:-244.47,-22.8783,0,-244.47,-22.8783,-244.47	1/1:5:0,4,0:0:0:4,0:144,0:-13.038,-1.20412,0,-13.038,-1.20412,-13.038	1/1:1:0,1,0:0:0:1,0:36,0:-3.59727,-0.30103,0,-3.59727,-0.30103,-3.59727	1/1:2:0,2,0:0:0:2,0:72,0:-6.83588,-0.60206,0,-6.83588,-0.60206,-6.83588	1/1:1:0,1,0:0:0:1,0:36,0:-3.59783,-0.30103,0,-3.59783,-0.30103,-3.59783	1/2:6:0,5,1:0:0:5,1:180,36:-17.9827,-3.29724,-1.79209,-15.0453,0,-14.7442	1/1:98:0,96,1:0:0:96,1:3427,36:-308.219,-28.8989,0,-305.282,-25.9366,-304.981	1/2:33:0,17,16:0:0:17,16:608,576:-96.9084,-47.3585,-42.241,-49.9085,0,-45.092	1/2:37:0,21,16:0:0:21,16:737,572:-106.959,-46.9965,-40.6749,-60.317,0,-55.5005	1/1:1:0,1,0:0:0:1,0:21,0:-2.09991,-0.30103,0,-2.09991,-0.30103,-2.09991	1/1:61:0,61,0:0:0:61,0:2150,0:-193.712,-18.3628,0,-193.712,-18.3628,-193.712	1/1:39:0,39,0:0:0:39,0:1384,0:-124.827,-11.7402,0,-124.827,-11.7402,-124.827	1/2:100:0,74,26:0:0:74,26:2613,921:-288.035,-75.3784,-53.1022,-213.01,0,-205.183	1/2:53:1,25,27:1:36:25,27:900,972:-149.385,-76.2791,-71.6907,-70.4126,0,-65.2221	1/1:52:0,51,0:0:0:51,0:1812,0:-163.027,-15.3525,0,-163.027,-15.3525,-163.027	1/2:53:0,26,27:0:0:26,27:921,957:-153.259,-78.2581,-70.4313,-75.2983,0,-67.1705	1/1:68:0,65,0:0:0:65,0:2286,0:-205.478,-19.567,0,-205.478,-19.567,-205.478	1/1:78:0,76,2:0:0:76,2:2708,72:-243.355,-22.8783,0,-237.48,-16.7606,-236.878	1/2:51:0,26,25:0:0:26,25:917,892:-147.714,-73.0739,-65.2472,-74.9946,0,-67.4689	1/2:66:0,29,37:0:0:29,37:1040,1324:-193.055,-108.256,-99.5261,-85.0837,0,-73.9456	1/2:24:0,15,9:0:0:15,9:532,324:-70.1229,-26.7957,-22.2802,-43.6851,0,-40.9758	1/1:4:0,4,0:0:0:4,0:144,0:-13.3108,-1.20412,0,-13.3108,-1.20412,-13.3108	1/2:54:0,31,23:0:0:31,23:1108,828:-158.18,-67.9204,-58.5885,-90.6181,0,-83.6944	1/2:37:0,23,14:0:0:23,14:801,504:-106.322,-41.4837,-34.56,-65.1935,0,-60.9791	1/1:6:0,6,0:0:0:6,0:216,0:-19.7885,-1.80618,0,-19.7885,-1.80618,-19.7885	1/1:86:0,86,0:0:0:86,0:3059,0:-275.074,-25.8886,0,-275.074,-25.8886,-275.074	1/2:38:0,31,7:0:0:31,7:1108,252:-111.236,-20.9217,-11.5898,-90.6738,0,-88.5666	1/1:3:0,3,0:0:0:3,0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chr10	8585909	.	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chr10	8585918	.	C	T	75365.5	PASS	AB=0.549738;ABP=48.1565;AC=136;AF=0.73913;AN=184;AO=3563;CIGAR=1X;DP=4515;DPB=4515;DPRA=0;EPP=7731.28;EPPR=2061.58;GTI=2;LEN=1;MEANALT=1;MQM=59.1855;MQMR=59.4758;NS=92;NUMALT=1;ODDS=0.126222;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127280;QR=33983;RO=952;RPL=3562;RPP=7731.28;RPPR=2061.58;RPR=1;RUN=1;SAF=0;SAP=7739.97;SAR=3563;SRF=0;SRP=2070.25;SRR=952;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:59:0,59:0:0:59:2124:-191.405,-17.7608,0	1/1:41:0,41:0:0:41:1472:-132.732,-12.3422,0	0/1:78:36,42:36:1292:42:1508:-112.407,0,-93.0964	0/1:27:10,17:10:360:17:597:-45.9066,0,-24.6165	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.7128	0/1:105:48,57:48:1701:57:2012:-149.638,0,-121.753	1/1:43:0,43:0:0:43:1517:-136.801,-12.9443,0	0/1:39:21,18:21:752:18:648:-46.8897,0,-56.2497	0/1:68:30,38:30:1076:38:1345:-100.837,0,-76.6758	1/1:30:0,30:0:0:30:1076:-97.1513,-9.0309,0	0/1:45:22,23:22:788:23:820:-60.5729,0,-57.6903	1/1:47:0,47:0:0:47:1676:-151.112,-14.1484,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:42:0,42:0:0:42:1512:-136.359,-12.6433,0	0/1:29:15,14:15:536:14:496:-36.1252,0,-39.8449	1/1:35:0,35:0:0:35:1256:-113.263,-10.5361,0	1/1:39:0,39:0:0:39:1396:-125.917,-11.7402,0	0/1:29:14,15:14:504:15:540:-40.1903,0,-36.96	0/1:119:56,63:56:1999:63:2248:-166.708,0,-144.319	0/1:74:31,43:31:1108:43:1533:-115.942,0,-77.6203	1/1:76:1,75:1:36:75:2689:-238.605,-19.28,0	1/1:40:0,40:0:0:40:1428:-128.779,-12.0412,0	1/1:12:0,12:0:0:12:432:-39.2105,-3.61236,0	0/1:24:11,13:11:392:13:462:-34.6339,0,-28.3768	1/1:165:0,165:0:0:165:5860:-527.233,-49.67,0	0/1:96:42,54:42:1497:54:1944:-146.29,0,-105.682	0/1:22:11,11:11:392:11:396:-29.3601,0,-28.9928	1/1:183:0,183:0:0:183:6543:-588.678,-55.0885,0	0/1:45:23,22:23:824:22:787:-57.5998,0,-60.9336	1/1:73:2,71:2:68:71:2540:-222.366,-15.5175,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:18:6,12:6:212:12:432:-33.7919,0,-14.0063	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7376	1/1:127:0,127:0:0:127:4553:-409.585,-38.2308,0	0/1:93:34,59:34:1216:59:2098:-160.818,0,-81.7462	0/1:37:15,22:15:540:22:777:-58.9915,0,-37.7902	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	1/1:44:1,43:1:32:43:1525:-134.228,-10.046,0	1/1:30:0,30:0:0:30:1073:-96.8554,-9.0309,0	0/1:37:21,16:21:752:16:572:-40.6457,0,-56.8565	0/1:38:21,17:21:737:17:604:-43.2239,0,-55.2115	1/1:31:0,31:0:0:31:1116:-100.726,-9.33193,0	0/1:62:21,41:21:752:41:1476:-114.434,0,-49.3406	1/1:42:0,42:0:0:42:1488:-134.016,-12.6433,0	1/1:77:0,77:0:0:77:2752:-247.896,-23.1793,0	0/1:98:37,61:37:1317:61:2176:-166.201,0,-89.3219	0/1:50:29,21:29:1031:21:756:-53.3019,0,-78.0464	0/1:55:24,31:24:864:31:1112:-83.8347,0,-61.5241	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:68:25,43:25:900:43:1548:-119.062,0,-60.8464	0/1:29:12,17:12:424:17:612:-46.6817,0,-29.7665	1/1:10:0,10:0:0:10:345:-31.3806,-3.0103,0	1/1:63:0,63:0:0:63:2252:-202.889,-18.9649,0	0/1:14:3,11:3:108:11:386:-30.815,0,-5.85599	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:11:7,4:7:235:4:144:-9.98424,0,-18.1665	0/1:12:2,10:2:72:10:360:-29.1212,0,-3.22436	1/1:72:1,71:1:36:71:2552:-226.212,-18.0759,0	.:.:.:.:.:.:.:.	0/1:80:32,48:32:1152:48:1690:-128.264,0,-79.1213	1/1:130:0,130:0:0:130:4651:-418.36,-39.1339,0	0/1:53:13,40:13:468:40:1426:-112.651,0,-26.4968	1/1:59:0,59:0:0:59:2105:-189.674,-17.7608,0	0/1:57:21,36:21:756:36:1296:-99.5377,0,-51.2085	1/1:72:0,72:0:0:72:2536:-228.422,-21.6742,0	0/1:10:3,7:3:108:7:252:-19.9618,0,-7.06487	0/1:45:24,21:24:845:21:752:-54.4484,0,-62.8123	1/1:47:0,47:0:0:47:1688:-152.205,-14.1484,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:56:0,56:0:0:56:1997:-179.937,-16.8577,0	1/1:27:0,27:0:0:27:953:-85.822,-8.12781,0	1/1:72:0,72:0:0:72:2580:-232.426,-21.6742,0	1/1:65:0,65:0:0:65:2332:-210.126,-19.567,0	0/1:15:9,6:9:311:6:216:-15.2751,0,-23.7028	0/1:35:19,16:19:684:16:572:-41.2692,0,-51.3457	1/1:6:0,6:0:0:6:216:-19.7822,-1.80618,0	1/1:105:0,105:0:0:105:3728:-335.236,-31.6082,0	0/1:46:16,30:16:576:30:1072:-82.6233,0,-38.3276	1/1:143:0,143:0:0:143:5109:-459.853,-43.0473,0	1/1:60:1,59:1:36:59:2124:-187.775,-14.4635,0	1/1:36:0,36:0:0:36:1292:-116.556,-10.8371,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:58:30,28:30:1067:28:1000:-72.8281,0,-78.8815	0/1:30:9,21:9:320:21:748:-58.6029,0,-20.1032	0/1:52:30,22:30:1063:22:784:-55.2222,0,-80.3109	0/1:44:25,19:25:896:19:680:-48.2675,0,-67.7137	0/1:28:19,9:19:676:9:324:-21.077,0,-52.7345	0/1:46:23,23:23:820:23:828:-60.417,0,-60.2427	0/1:32:23,9:23:824:9:324:-19.8729,0,-64.8457	1/1:30:0,30:0:0:30:1064:-95.6224,-9.0309,0	1/1:41:0,41:0:0:41:1471:-132.489,-12.3422,0
chr10	9423249	.	CGGT	TGGG,CGGG	205645	PASS	AB=0.519933,0.475031;ABP=19.4581,28.8183;AC=140,48;AF=0.744681,0.255319;AN=188;AO=7397,2282;CIGAR=1X2M1X,3M1X;DP=9731;DPB=9731;DPRA=0,1.03936;EPP=15874.9,4914.98;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=2.12766,2.50877;MQM=59.9144,59.9658;MQMR=60;NS=94;NUMALT=2;ODDS=5.53108;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=259579,81447;QR=25;RO=1;RPL=22,5;RPP=15874.9,4914.98;RPPR=5.18177;RPR=7375,2277;RUN=1,1;SAF=7397,2282;SAP=16065.4,4958.31;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:93:0,43,47:0:0:43,47:1516,1680:-260.46,-137.026,-124.082,-123.474,0,-109.326	1/1:95:0,94,0:0:0:94,0:3314,0:-298.188,-28.2968,0,-298.188,-28.2968,-298.188	1/1:198:0,196,0:0:0:196,0:6897,0:-620.509,-59.0019,0,-620.509,-59.0019,-620.509	1/2:271:0,138,132:0:0:138,132:4763,4708:-770.846,-383.902,-342.36,-387.054,0,-347.318	1/2:63:0,35,28:0:0:35,28:1245,1004:-183.708,-82.247,-71.711,-101.818,0,-93.3896	1/2:25:0,15,10:0:0:15,10:539,360:-73.7052,-29.734,-25.2186,-44.3307,0,-41.3204	1/2:81:0,40,40:0:0:40,40:1406,1410:-229.296,-114.853,-102.812,-114.493,0,-102.452	1/1:121:0,120,1:0:0:120,1:4197,36:-377.51,-36.1236,0,-374.572,-32.8264,-374.271	1/2:138:0,73,65:0:0:73,65:2526,2320:-394.131,-188.867,-166.891,-205.616,0,-186.049	1/2:61:0,36,25:0:0:36,25:1247,888:-174.053,-72.7133,-61.8762,-101.691,0,-94.1656	1/1:79:0,79,0:0:0:79,0:2770,0:-249.536,-23.7814,0,-249.536,-23.7814,-249.536	1/2:127:0,77,49:0:0:77,49:2672,1756:-360.552,-143.361,-120.181,-217.331,0,-202.581	1/1:125:0,125,0:0:0:125,0:4412,0:-397.25,-37.6288,0,-397.25,-37.6288,-397.25	1/1:56:0,56,0:0:0:56,0:1978,0:-178.294,-16.8577,0,-178.294,-16.8577,-178.294	1/1:105:0,104,1:0:0:104,1:3692,36:-332.107,-31.3071,0,-329.17,-28.0099,-328.868	1/2:83:0,48,35:0:0:48,35:1703,1256:-241.558,-102.809,-88.3598,-139.106,0,-128.57	1/1:35:0,35,0:0:0:35,0:1233,0:-111.272,-10.5361,0,-111.272,-10.5361,-111.272	1/1:39:0,38,0:0:0:38,0:1326,0:-119.287,-11.4391,0,-119.287,-11.4391,-119.287	1/2:53:0,26,27:0:0:26,27:933,968:-155.413,-79.3096,-71.4828,-76.4624,0,-68.3346	1/2:129:0,65,63:0:0:65,63:2297,2243:-369.875,-182.807,-163.24,-187.062,0,-168.097	1/2:226:0,120,105:0:0:120,105:4198,3751:-647.122,-305.822,-269.699,-341.294,0,-309.686	1/1:73:0,73,0:0:0:73,0:2547,0:-229.48,-21.9752,0,-229.48,-21.9752,-229.48	1/1:163:0,161,2:0:0:161,2:5646,72:-507.906,-48.4658,0,-502.031,-42.2312,-501.429	1/1:96:0,91,3:0:0:91,3:3188,108:-286.818,-27.3937,0,-278.006,-18.5263,-277.103	1/2:117:0,87,30:0:0:87,30:3030,1076:-334.507,-88.122,-61.9323,-246.741,0,-237.71	1/1:197:0,195,0:0:0:195,0:6858,0:-616.98,-58.7009,0,-616.98,-58.7009,-616.98	1/2:372:1,202,168:1:25:202,168:7058,5982:-1059.49,-485.662,-426.802,-572.227,0,-523.602	1/2:51:0,26,24:0:0:26,24:926,858:-145.49,-70.0146,-62.1878,-75.5292,0,-68.3045	1/1:240:0,240,0:0:0:240,0:8348,0:-751.342,-72.2472,0,-751.342,-72.2472,-751.342	1/2:68:0,28,39:0:0:28,39:988,1400:-194.649,-114.199,-105.77,-80.4453,0,-68.7052	1/1:105:0,105,0:0:0:105,0:3654,0:-329.066,-31.6082,0,-329.066,-31.6082,-329.066	1/1:17:0,17,0:0:0:17,0:580,0:-52.5177,-5.11751,0,-52.5177,-5.11751,-52.5177	1/2:27:0,11,16:0:0:11,16:388,570:-78.4077,-46.8163,-43.5049,-31.9455,0,-27.129	1/1:8:0,8,0:0:0:8,0:282,0:-25.7211,-2.40824,0,-25.7211,-2.40824,-25.7211	1/1:20:0,20,0:0:0:20,0:704,0:-63.6837,-6.0206,0,-63.6837,-6.0206,-63.6837	1/2:42:0,23,19:0:0:23,19:812,680:-121.931,-55.8096,-48.8859,-66.4768,0,-60.7573	1/1:224:0,224,0:0:0:224,0:7908,0:-711.751,-67.4307,0,-711.751,-67.4307,-711.751	1/2:89:0,56,33:0:0:56,33:1964,1184:-256.754,-96.9343,-80.0766,-160.176,0,-150.242	1/2:55:0,28,26:0:0:28,26:993,923:-156.101,-75.2003,-66.7715,-80.8953,0,-73.0686	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:161:0,154,7:0:0:154,7:5401,252:-485.853,-46.3586,0,-465.291,-25.4369,-463.184	1/1:57:0,57,0:0:0:57,0:1983,0:-178.683,-17.1587,0,-178.683,-17.1587,-178.683	1/2:129:0,67,62:0:0:67,62:2378,2217:-374.882,-181.13,-160.961,-194.108,0,-175.445	1/2:81:0,48,33:0:0:48,33:1711,1179:-235.952,-96.4832,-82.0338,-139.826,0,-129.892	1/1:69:0,67,0:0:0:67,0:2320,0:-208.798,-20.169,0,-208.798,-20.169,-208.798	1/2:147:0,74,73:0:0:74,73:2589,2608:-423.616,-212.993,-190.717,-210.976,0,-189.001	1/1:143:0,142,0:0:0:142,0:5002,0:-450.076,-42.7463,0,-450.076,-42.7463,-450.076	1/1:204:0,200,1:0:0:200,1:7017,36:-631.264,-60.206,0,-628.327,-57.2586,-628.026	1/2:89:0,48,41:0:0:48,41:1709,1468:-259.205,-120.074,-105.624,-139.488,0,-127.146	1/2:110:0,63,47:0:0:63,47:2220,1688:-318.799,-138.059,-119.094,-181.097,0,-166.948	1/2:113:0,51,62:0:0:51,62:1783,2213:-325.813,-180.769,-165.417,-145.397,0,-126.733	1/2:14:0,11,2:0:0:11,2:382,72:-36.9186,-5.87483,-2.5635,-31.0421,0,-30.4401	1/2:134:0,62,72:0:0:62,72:2174,2580:-387.681,-210.775,-192.111,-177.26,0,-155.586	1/2:35:0,19,16:0:0:19,16:664,563:-100.196,-46.1827,-40.4631,-54.3638,0,-49.5473	1/1:15:0,15,0:0:0:15,0:528,0:-47.8513,-4.51545,0,-47.8513,-4.51545,-47.8513	1/1:199:0,197,0:0:0:197,0:6935,0:-623.864,-59.3029,0,-623.864,-59.3029,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chr10	9430666	.	C	T	111193	PASS	AB=0.51359;ABP=8.67629;AC=136;AF=0.731183;AN=186;AO=5305;CIGAR=1X;DP=7043;DPB=7043;DPRA=0;EPP=11514;EPPR=3768.34;GTI=2;LEN=1;MEANALT=1.04301;MQM=53.2767;MQMR=59.4977;NS=93;NUMALT=1;ODDS=1.64746;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189824;QR=61508;RO=1734;RPL=5297;RPP=11453.3;RPPR=3707.79;RPR=8;RUN=1;SAF=5298;SAP=11462;SAR=7;SRF=1727;SRP=3707.79;SRR=7;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:19,25:19:671:25:876:-65.7196,0,-47.4623	1/1:57:1,56:1:36:56:2012:-177.138,-13.5604,0	1/1:118:0,118:0:0:118:4217:-377.741,-35.5215,0	0/1:168:87,81:87:3066:81:2900:-210.344,0,-225.236	0/1:35:9,25:9:315:25:888:-69.4089,0,-18.0892	0/1:40:20,20:20:701:20:705:-51.5758,0,-51.3542	0/1:124:63,61:63:2241:61:2192:-158.747,0,-164.613	1/1:115:0,115:0:0:115:4113:-369.414,-34.6185,0	0/1:92:45,47:45:1599:47:1671:-122.248,0,-116.472	0/1:37:14,23:14:487:23:815:-62.4845,0,-33.0201	1/1:27:0,27:0:0:27:959:-86.3158,-8.12781,0	0/1:98:54,44:54:1908:44:1576:-110.875,0,-142.471	1/1:87:1,86:1:36:86:3066:-271.17,-22.5913,0	1/1:48:0,48:0:0:48:1689:-151.575,-14.4494,0	1/1:73:0,73:0:0:73:2609:-234.418,-21.9752,0	0/1:54:19,35:19:675:35:1260:-97.1634,0,-44.8161	1/1:32:0,32:0:0:32:1133:-101.846,-9.63296,0	1/1:28:0,28:0:0:28:1000:-89.8864,-8.42884,0	0/1:21:12,9:12:419:9:324:-23.11,0,-31.7128	0/1:155:78,77:78:2764:77:2755:-201.006,0,-202.322	0/1:116:55,61:55:1972:61:2192:-161.591,0,-142.822	1/1:90:0,90:0:0:90:3213:-287.815,-27.0927,0	1/1:86:4,82:4:144:82:2944:-251.441,-12.5774,0	0/1:70:15,55:15:540:55:1972:-156.116,0,-27.8421	0/1:112:44,68:44:1564:68:2448:-186.289,0,-107.316	1/1:173:0,173:0:0:173:6181:-554.554,-52.0782,0	0/1:204:80,124:80:2840:124:4456:-338.667,0,-194.406	0/1:28:14,14:14:489:14:489:-35.8497,0,-35.9054	1/1:217:0,217:0:0:217:7800:-699.301,-65.3235,0	0/1:131:64,67:64:2283:67:2404:-176.879,0,-166.269	1/1:98:0,98:0:0:98:3505:-315.179,-29.5009,0	1/1:5:0,5:0:0:5:171:-15.6874,-1.50515,0	0/1:13:3,10:3:104:10:360:-28.7845,0,-5.78942	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5105,-1.50515,0	0/1:3:1,2:1:36:2:72:-5.91644,0,-2.69518	1/1:188:1,187:1:36:187:6677:-593.304,-52.9954,0	0/1:72:38,34:38:1343:34:1211:-86.9851,0,-99.4952	0/1:36:12,24:12:423:24:851:-65.2678,0,-27.568	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.6326	1/1:137:5,132:5:180:132:4732:-406.94,-24.6937,0	1/1:12:0,12:0:0:12:432:-39.1656,-3.61236,0	0/1:197:93,104:93:3294:104:3723:-273.47,0,-237.069	0/1:59:28,31:28:995:31:1116:-82.9183,0,-72.0986	1/1:64:0,63:0:0:63:2242:-200.641,-18.9649,0	0/1:132:63,69:63:2247:69:2435:-178.893,0,-162.715	1/1:94:3,91:3:108:91:3276:-283.691,-18.2217,0	1/1:153:0,153:0:0:153:5492:-493.592,-46.0576,0	0/1:50:30,19:30:1051:19:680:-46.2482,0,-79.7876	0/1:53:21,32:21:732:32:1140:-86.848,0,-50.2395	0/1:94:60,34:60:2135:34:1216:-80.9886,0,-164.106	0/1:7:1,6:1:36:6:216:-17.6667,0,-1.49106	0/1:63:28,35:28:996:35:1260:-94.2671,0,-70.9785	0/1:49:25,24:25:896:24:851:-61.4963,0,-66.1902	1/1:6:0,6:0:0:6:216:-19.7408,-1.80618,0	1/1:127:0,127:0:0:127:4530:-406.795,-38.2308,0	0/1:57:21,36:21:730:36:1296:-99.6872,0,-48.4266	1/1:4:0,4:0:0:4:144:-13.2801,-1.20412,0	0/1:5:3,2:3:108:2:68:-4.94051,0,-8.57002	0/1:39:23,16:23:812:16:554:-38.356,0,-61.6515	1/1:77:0,77:0:0:77:2756:-247.883,-23.1793,0	0/1:3:2,1:2:72:1:36:-2.69259,0,-5.93363	0/1:137:68,69:68:2415:69:2463:-179.999,0,-176.253	1/1:148:4,144:4:144:144:5176:-449.778,-31.2388,0	0/1:29:12,17:12:428:17:612:-46.3537,0,-30.1289	1/1:66:0,66:0:0:66:2372:-213.098,-19.868,0	0/1:125:68,57:68:2410:57:2052:-147.152,0,-179.522	1/1:102:0,102:0:0:102:3662:-327.986,-30.7051,0	0/1:17:13,4:13:468:4:144:-8.17723,0,-37.3375	0/1:46:22,23:22:784:23:812:-58.9814,0,-56.9788	1/1:36:0,36:0:0:36:1279:-114.926,-10.8371,0	1/1:6:0,6:0:0:6:216:-19.7762,-1.80618,0	1/1:106:0,106:0:0:106:3787:-339.93,-31.9092,0	1/1:45:0,45:0:0:45:1612:-143.301,-13.5464,0	1/1:120:0,120:0:0:120:4293:-385.255,-36.1236,0	1/1:120:0,120:0:0:120:4303:-385.833,-36.1236,0	0/1:98:63,35:63:2255:35:1256:-83.3334,0,-173.695	0/1:75:37,38:37:1324:38:1352:-98.7372,0,-96.6783	1/1:5:0,5:0:0:5:180:-16.5105,-1.50515,0	1/1:82:0,82:0:0:82:2943:-264.583,-24.6845,0	0/1:95:48,47:48:1688:47:1670:-121.319,0,-123.581	1/1:171:0,171:0:0:171:6139:-551.75,-51.4761,0	1/1:47:0,47:0:0:47:1688:-151.947,-14.1484,0	1/1:77:0,77:0:0:77:2764:-248.387,-23.1793,0	1/1:51:0,51:0:0:51:1828:-164.594,-15.3525,0	0/1:135:71,64:71:2500:64:2304:-166.471,0,-184.603	0/1:31:20,11:20:708:11:396:-26.5325,0,-54.7055	0/1:64:33,31:33:1184:31:1116:-81.0227,0,-87.5576	0/1:71:29,42:29:1044:42:1508:-114.266,0,-72.9017	0/1:19:7,12:7:252:12:428:-32.9604,0,-17.3094	0/1:59:26,33:26:913:33:1180:-88.3549,0,-64.7232	0/1:66:52,14:52:1835:14:504:-25.7949,0,-145.557	1/1:107:0,107:0:0:107:3810:-341.455,-32.2102,0	1/1:101:0,101:0:0:101:3606:-324.086,-30.404,0
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chr10	9858776	.	A	G	26990.2	PASS	AB=0.486273;ABP=8.61402;AC=48;AF=0.26087;AN=184;AO=1675;CIGAR=1X;DP=6771;DPB=6771;DPRA=1.1117;EPP=3588.3;EPPR=10904.4;GTI=1;LEN=1;MEANALT=1;MQM=59.9863;MQMR=59.9937;NS=92;NUMALT=1;ODDS=3.02962;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58659;QR=181397;RO=5096;RPL=6;RPP=3588.3;RPPR=10904.4;RPR=1669;RUN=1;SAF=0;SAP=3640.23;SAR=1675;SRF=0;SRP=11068.8;SRR=5096;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:12,13:12:428:13:460:-34.2096,0,-31.3331	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:109:59,50:59:2104:50:1737:-123.797,0,-156.817	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/1:27:18,9:18:644:9:320:-21.0145,0,-50.1628	0/1:87:68,19:68:2394:19:675:-34.8873,0,-189.525	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.772	0/1:97:58,39:58:2076:39:1388:-96.019,0,-157.911	0/1:100:61,39:61:2159:39:1362:-92.7739,0,-164.474	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/1:92:38,54:38:1364:54:1916:-145.023,0,-95.366	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.157	0/0:126:126,0:126:4447:0:0:0,-37.9298,-400.401	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:66:30,36:30:1067:36:1256:-93.4715,0,-76.4732	0/0:90:90,0:90:3211:0:0:0,-27.0927,-289.213	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/1:57:30,27:30:1063:27:960:-69.5576,0,-78.8221	0/1:69:41,28:41:1459:28:974:-67.1971,0,-110.834	0/1:179:56,123:56:1997:123:4260:-329.7,0,-126.118	0/0:48:48,0:48:1706:0:0:0,-14.4494,-153.824	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.662	0/0:116:112,4:112:4003:4:144:0,-21.6059,-347.146	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	0/0:239:238,1:238:8459:1:36:0,-68.3479,-757.716	0/1:116:75,41:75:2696:41:1429:-93.9842,0,-207.964	0/1:56:26,30:26:932:30:1059:-78.7627,0,-67.3412	0/0:115:115,0:115:4068:0:0:0,-34.6184,-366.309	0/1:91:33,58:33:1180:58:2024:-155.037,0,-79.1143	0/0:100:100,0:100:3567:0:0:0,-30.103,-321.238	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:278:278,0:278:9842:0:0:0,-83.6863,-885.734	0/1:140:66,74:66:2359:74:2535:-186.252,0,-170.424	0/1:72:38,34:38:1364:34:1192:-85.911,0,-101.387	.:.:.:.:.:.:.:.	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:63:32,31:32:1127:31:1099:-80.2546,0,-82.7726	0/1:104:54,50:54:1936:50:1748:-126.294,0,-143.209	0/0:73:73,0:73:2570:0:0:0,-21.9752,-231.551	0/1:107:62,45:62:2214:45:1584:-110.637,0,-167.313	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:101:101,0:101:3603:0:0:0,-30.404,-324.448	0/1:80:42,38:42:1495:38:1336:-96.4548,0,-110.761	0/1:89:46,43:46:1643:43:1493:-107.867,0,-121.366	0/1:109:59,50:59:2096:50:1763:-126.14,0,-156.095	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	0/1:38:15,23:15:536:23:812:-61.9618,0,-37.1357	0/1:12:5,7:5:180:7:243:-18.5951,0,-12.9397	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/1:27:19,8:19:669:8:272:-16.6834,0,-52.4061	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:21:10,11:10:360:11:378:-28.0275,0,-26.4227	0/1:36:18,18:18:648:18:626:-45.8262,0,-47.8148	0/0:157:157,0:157:5575:0:0:0,-47.2617,-501.876	0/1:7:3,4:3:108:4:131:-10.0063,0,-7.96796	0/1:93:55,38:55:1943:38:1324:-91.4608,0,-147.15	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.51	0/1:73:38,35:38:1364:35:1220:-88.1263,0,-101.041	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:124:75,49:75:2671:49:1694:-115.414,0,-203.308	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/1:39:22,17:22:792:17:580:-40.7792,0,-59.8655	0/1:63:27,36:27:968:36:1272:-95.818,0,-68.4725	0/0:95:95,0:95:3374:0:0:0,-28.5978,-303.877	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:94:94,0:94:3346:0:0:0,-28.2968,-301.356	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:30:16,14:16:572:14:500:-36.3053,0,-42.7825	0/1:76:44,32:44:1568:32:1144:-80.3912,0,-118.533	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:34:16,18:16:564:18:640:-47.6943,0,-40.8553	0/0:64:64,0:64:2261:0:0:0,-19.2659,-203.752	0/0:123:123,0:123:4367:0:0:0,-37.0267,-393.207	0/0:78:78,0:78:2778:0:0:0,-23.4803,-250.26	0/0:147:147,0:147:5237:0:0:0,-44.2514,-471.468	0/1:218:111,107:111:3917:107:3747:-271.806,0,-287.099	0/1:55:30,25:30:1076:25:888:-63.6824,0,-80.5962	0/1:99:50,49:50:1792:49:1732:-126.363,0,-131.761	0/1:73:40,33:40:1420:33:1176:-84.1726,0,-106.122	0/1:70:34,36:34:1220:36:1251:-91.8164,0,-89.0347	0/1:144:62,82:62:2220:82:2874:-215.321,0,-156.716	0/1:121:49,72:49:1743:72:2526:-191.165,0,-120.729	0/0:58:58,0:58:2038:0:0:0,-17.4597,-183.691	0/0:129:129,0:129:4579:0:0:0,-38.8329,-412.276
chr10	9859160	.	C	T	29624.9	PASS	AB=0.500572;ABP=3.02024;AC=48;AF=0.255319;AN=188;AO=1769;CIGAR=1X;DP=6990;DPB=6990;DPRA=1.13017;EPP=3835.66;EPPR=11212.5;GTI=0;LEN=1;MEANALT=1.03448;MQM=59.9062;MQMR=59.9891;NS=94;NUMALT=1;ODDS=3.11868;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63430;QR=186796;RO=5218;RPL=1;RPP=3835.66;RPPR=11212.5;RPR=1768;RUN=1;SAF=1769;SAP=3844.34;SAR=0;SRF=5218;SRP=11333.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/0:73:73,0:73:2602:0:0:0,-21.9752,-234.428	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/1:133:65,68:65:2332:68:2433:-179.187,0,-170.103	0/1:13:10,3:10:351:3:99:-5.32319,0,-28.0133	0/1:36:24,12:24:864:12:432:-28.3759,0,-67.2455	0/1:77:44,33:44:1571:33:1184:-83.689,0,-118.502	0/0:95:94,1:94:3353:1:36:0,-24.9996,-298.388	0/1:72:21,50:21:752:50:1788:-139.47,0,-46.2734	0/1:74:40,34:40:1431:34:1220:-87.8282,0,-106.811	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:102:41,61:41:1468:61:2184:-166.114,0,-101.711	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:106:106,0:106:3790:0:0:0,-31.9092,-341.297	0/0:79:78,0:78:2787:0:0:0,-23.4803,-250.71	0/1:72:32,40:32:1144:40:1440:-108.224,0,-81.5954	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/1:51:26,25:26:932:25:900:-65.9508,0,-68.8463	0/1:121:67,54:67:2392:54:1935:-137.915,0,-179.113	0/1:97:43,54:43:1540:54:1926:-144.415,0,-109.693	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.735	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.802	0/0:64:61,3:61:2179:3:108:0,-9.19075,-186.3	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/0:153:153,0:153:5468:0:0:0,-46.0576,-492.249	0/1:137:69,68:69:2459:68:2426:-177.353,0,-180.323	0/1:47:17,30:17:612:30:1080:-83.3648,0,-41.265	0/0:135:134,1:134:4771:1:36:0,-37.0408,-425.951	0/1:151:86,65:86:3088:65:2336:-165.039,0,-232.692	0/0:80:79,1:79:2827:1:36:0,-20.4841,-251.07	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:12:4,7:4:131:7:252:-19.3578,0,-8.4488	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/0:207:206,1:206:7380:1:36:0,-58.7149,-660.648	0/1:63:43,20:43:1544:20:716:-45.8028,0,-120.286	0/1:86:45,41:45:1612:41:1476:-107.248,0,-119.481	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:133:128,5:128:4586:5:180:0,-23.4849,-396.351	0/0:53:53,0:53:1890:0:0:0,-15.9546,-170.377	0/1:107:50,57:50:1779:57:2048:-152.377,0,-128.182	0/1:89:51,38:51:1827:38:1364:-96.269,0,-137.919	0/0:66:66,0:66:2346:0:0:0,-19.868,-211.398	0/1:98:43,55:43:1544:55:1968:-147.894,0,-109.752	0/0:104:104,0:104:3731:0:0:0,-31.3071,-335.989	0/0:109:106,3:106:3800:3:108:0,-22.7371,-332.122	0/1:96:49,47:49:1747:47:1688:-123.308,0,-128.615	0/1:99:46,53:46:1637:53:1908:-142.196,0,-117.815	0/1:84:54,30:54:1940:30:1067:-71.0547,0,-149.59	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:95:47,48:47:1692:48:1724:-126.839,0,-123.969	0/1:37:12,25:12:423:25:900:-70.1829,0,-27.267	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:98:98,0:98:3495:0:0:0,-29.5009,-314.761	0/1:49:29,20:29:1044:20:720:-50.3783,0,-79.5243	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:55:33,22:33:1184:22:792:-55.049,0,-90.3117	0/0:155:155,0:155:5563:0:0:0,-46.6596,-500.791	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:92:46,46:46:1648:46:1652:-121.273,0,-120.914	0/0:90:88,2:88:3131:2:72:0,-20.256,-275.177	0/1:66:39,27:39:1391:27:968:-67.5648,0,-105.62	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:120:70,50:70:2520:50:1800:-125.969,0,-190.928	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/1:64:35,29:35:1252:29:1038:-74.468,0,-93.7192	0/1:55:21,34:21:752:34:1212:-92.8297,0,-51.4496	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:19:18,1:18:648:1:36:0,-2.12129,-55.0536	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.142	0/0:109:109,0:109:3916:0:0:0,-32.8123,-352.632	0/1:35:12,23:12:428:23:800:-61.7721,0,-28.3228	0/1:90:35,55:35:1260:55:1976:-151.022,0,-86.6128	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/1:52:12,40:12:428:40:1436:-113.884,0,-23.2052	0/0:142:142,0:142:5096:0:0:0,-42.7463,-458.782	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.17	0/0:84:83,1:83:2972:1:36:0,-21.6882,-264.115	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:162:74,88:74:2651:88:3164:-235.946,0,-190.069	0/1:25:15,10:15:540:10:360:-25.2186,0,-41.4108	0/1:93:45,48:45:1608:48:1728:-127.81,0,-117.014	0/1:107:57,50:57:2044:50:1796:-129.712,0,-151.084	0/1:98:61,37:61:2184:37:1332:-90.6814,0,-167.325	0/1:130:72,58:72:2584:58:2084:-148.692,0,-193.675	0/1:74:21,53:21:756:53:1890:-148.101,0,-46.091	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:101:101,0:101:3614:0:0:0,-30.404,-325.464
chr10	9859178	.	CCCAT	CCCAG,TCCAG	145018	PASS	AB=0.488499,0.504313;ABP=7.00611,3.57221;AC=140,48;AF=0.744681,0.255319;AN=188;AO=5069,1777;CIGAR=4M1X,1X3M1X;DP=6901;DPB=6902.8;DPRA=0,1.16214;EPP=11001.5,3861.72;EPPR=13.8677;GTI=0;LEN=1,5;MEANALT=2.15957,2.55;MQM=59.9921,59.9004;MQMR=60;NS=94;NUMALT=2;ODDS=3.46012;PAIRED=0,0;PAIREDR=0;PAO=3.5,5;PQA=104,176;PQR=0;PRO=0.5;QA=180775,61884;QR=148;RO=5;RPL=5068,1777;RPP=11001.5,3861.72;RPPR=13.8677;RPR=1,0;RUN=1,1;SAF=5069,1777;SAP=11010.2,3861.72;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:21:0,10,11:0:0:10,11:356,383:-60.5109,-31.4921,-28.4818,-29.3709,0,-26.0596	1/1:73:1,72,0:1:22:72,0:2567,0:-229.08,-19.7753,0,-229.381,-21.6742,-231.058	1/1:61:1,60,0:1:24:60,0:2143,0:-190.737,-15.9629,0,-191.038,-18.0618,-192.895	1/2:132:0,62,68:0:0:62,68:2205,2385:-373.889,-194.191,-175.527,-179.802,0,-159.332	1/2:12:0,9,3:0:0:9,3:324,100:-34.8835,-8.42677,-5.7175,-26.7966,0,-25.8935	1/2:34:0,23,10:0:0:23,10:824,344:-95.1996,-27.9851,-21.0614,-67.2668,0,-64.2565	1/2:80:0,45,35:0:0:45,35:1597,1209:-228.698,-98.5751,-85.0288,-130.472,0,-119.936	1/1:90:0,89,1:0:0:89,1:3187,36:-286.693,-26.7917,0,-283.756,-23.4944,-283.455	1/2:72:0,20,52:0:0:20,52:716,1799:-204.927,-146.535,-140.514,-58.7471,0,-43.0936	1/2:73:0,38,34:0:0:38,34:1368,1178:-207.473,-95.8429,-84.4038,-111.739,0,-101.504	1/1:100:0,97,0:0:0:97,0:3450,0:-310.379,-29.1999,0,-310.379,-29.1999,-310.379	1/2:102:1,40,60:1:35:40,60:1423,2061:-280.228,-164.553,-155.36,-113.18,0,-97.9659	1/1:90:0,90,0:0:0:90,0:3215,0:-289.572,-27.0927,0,-289.572,-27.0927,-289.572	1/1:101:0,101,0:0:0:101,0:3587,0:-323.036,-30.404,0,-323.036,-30.404,-323.036	1/1:77:0,74,0:0:0:74,0:2613,0:-235.059,-22.2762,0,-235.059,-22.2762,-235.059	1/2:71:0,30,41:0:0:30,41:1076,1438:-205.141,-117.374,-108.343,-88.122,0,-75.7797	1/1:84:0,84,0:0:0:84,0:2995,0:-269.783,-25.2865,0,-269.783,-25.2865,-269.783	1/1:64:0,63,1:0:0:63,1:2243,36:-201.773,-18.9649,0,-198.836,-15.6676,-198.535	1/2:52:0,26,26:0:0:26,26:932,901:-149.594,-73.5743,-65.7475,-76.3721,0,-68.5453	1/2:118:0,62,56:0:0:62,56:2224,1941:-339.5,-158.092,-139.428,-181.76,0,-164.903	1/2:97:0,43,54:0:0:43,54:1539,1847:-275.756,-150.248,-137.304,-125.858,0,-109.602	1/1:61:0,61,0:0:0:61,0:2183,0:-196.735,-18.3628,0,-196.735,-18.3628,-196.735	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/1:63:0,58,3:0:0:58,3:2084,107:-187.483,-17.4597,0,-178.761,-8.7212,-177.858	1/2:23:0,10,13:0:0:10,13:356,452:-66.1156,-37.0968,-34.0865,-29.3709,0,-25.4576	1/1:147:0,144,0:0:0:144,0:5152,0:-463.465,-43.3483,0,-463.465,-43.3483,-463.465	1/2:134:0,65,67:0:0:65,67:2306,2348:-378.933,-191.052,-171.485,-187.874,0,-167.705	1/2:47:0,17,30:0:0:17,30:608,1060:-136.259,-86.6802,-81.5627,-49.9345,0,-40.9036	1/1:133:0,130,1:0:0:130,1:4663,36:-419.519,-39.1339,0,-416.581,-36.1715,-416.28	1/2:145:0,80,63:0:0:80,63:2872,2206:-413.808,-179.527,-155.444,-234.319,0,-215.354	1/1:82:0,81,1:0:0:81,1:2895,36:-260.426,-24.3834,0,-257.488,-21.0862,-257.187	1/1:7:0,6,0:0:0:6,0:216,0:-19.482,-1.80618,0,-19.482,-1.80618,-19.482	1/2:12:0,5,7:0:0:5,7:180,251:-35.5183,-20.8306,-19.3255,-15.0469,0,-12.9397	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:10:0,4,6:0:0:4,6:140,203:-28.1903,-16.7951,-15.591,-11.7405,0,-9.93428	1/1:205:0,201,2:0:0:201,2:7166,71:-644.661,-60.507,0,-638.876,-54.7044,-638.274	1/2:62:0,44,17:0:0:44,17:1572,570:-174.381,-46.1969,-32.9515,-128.223,0,-123.106	1/2:86:0,44,40:0:0:44,40:1576,1397:-242.227,-113.693,-100.447,-128.593,0,-116.552	1/1:1:0,1,0:0:0:1,0:32,0:-3.19931,-0.30103,0,-3.19931,-0.30103,-3.19931	1/1:131:0,125,5:0:0:125,5:4472,169:-402.318,-37.6288,0,-388.62,-23.882,-387.115	1/1:53:0,52,0:0:0:52,0:1863,0:-167.707,-15.6536,0,-167.707,-15.6536,-167.707	1/2:107:0,49,57:0:0:49,57:1735,1984:-302.695,-161.363,-146.612,-141.372,0,-124.213	1/2:89:0,51,38:0:0:51,38:1801,1345:-256.574,-109.91,-94.5577,-147.017,0,-135.578	1/1:61:0,61,0:0:0:61,0:2129,0:-191.878,-18.3628,0,-191.878,-18.3628,-191.878	1/2:97:1,41,55:1:36:41,55:1476,1894:-271.02,-150.881,-141.476,-117.497,0,-103.877	1/1:102:0,98,2:0:0:98,2:3490,72:-314.002,-29.5009,0,-308.127,-23.5737,-307.525	1/1:104:0,101,3:0:0:101,3:3575,108:-321.598,-30.404,0,-312.785,-21.232,-311.882	1/2:95:0,48,47:0:0:48,47:1719,1645:-274.021,-133.83,-119.381,-140.186,0,-126.037	1/2:101:0,46,54:0:0:46,54:1648,1894:-288.498,-154.091,-140.244,-134.401,0,-118.146	1/2:84:0,54,30:0:0:54,30:1908,1044:-240.627,-85.2377,-68.9821,-155.739,0,-146.708	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/2:95:0,46,49:0:0:46,49:1635,1718:-273.384,-140.146,-126.299,-133.591,0,-118.84	1/2:37:0,12,25:0:0:12,25:424,875:-106.073,-71.5412,-67.9289,-34.8841,0,-27.3583	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:101:0,99,0:0:0:99,0:3526,0:-317.224,-29.802,0,-317.224,-29.802,-317.224	1/2:47:0,27,20:0:0:27,20:968,667:-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chr10	9875230	.	G	A	21378.8	PASS	AB=0.51947;ABP=10.9586;AC=49;AF=0.260638;AN=188;AO=1278;CIGAR=1X;DP=4801;DPB=4801;DPRA=1.05057;EPP=2778.15;EPPR=7458.87;GTI=1;LEN=1;MEANALT=1.03774;MQM=59.8584;MQMR=59.8012;NS=94;NUMALT=1;ODDS=2.38427;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45619;QR=126079;RO=3521;RPL=0;RPP=2778.15;RPPR=7458.87;RPR=1278;RUN=1;SAF=1278;SAP=2778.15;SAR=0;SRF=3521;SRP=7648.76;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:6,15:6:216:15:514:-40.2605,0,-13.4689	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.822	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.174	0/1:99:46,53:46:1648:53:1888:-140.396,0,-118.796	0/1:35:17,18:17:612:18:644:-47.7545,0,-44.8728	0/1:28:14,14:14:500:14:500:-36.9073,0,-36.8991	0/1:58:23,35:23:824:35:1260:-96.1591,0,-57.0236	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.104	0/1:33:11,22:11:396:22:788:-61.3108,0,-26.0488	0/1:47:23,24:23:824:24:860:-63.5731,0,-60.3349	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:63:37,26:37:1332:26:932:-65.234,0,-100.439	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:68:68,0:68:2422:0:0:0,-20.47,-218.224	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:47:25,22:25:900:22:792:-57.4573,0,-67.1726	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.337	0/0:54:54,0:54:1920:0:0:0,-16.2556,-172.441	0/1:51:28,23:28:995:23:819:-58.679,0,-74.5078	0/1:77:33,44:33:1184:44:1546:-116.248,0,-83.6027	0/1:123:77,45:77:2756:45:1601:-106.355,0,-211.174	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.451	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:52:50,2:50:1780:2:72:0,-8.81684,-153.559	0/1:16:2,14:2:72:14:496:-40.1518,0,-2.02024	0/0:94:94,0:94:3342:0:0:0,-28.2968,-300.905	0/1:68:35,33:35:1252:33:1184:-86.3983,0,-92.4974	0/1:29:18,11:18:648:11:392:-26.8902,0,-49.922	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.644	0/1:94:59,35:59:2086:35:1258:-85.2241,0,-159.65	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:13:5,8:5:180:8:273:-20.9785,0,-11.8456	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:163:163,0:163:5851:0:0:0,-49.0679,-526.66	0/1:94:53,41:53:1908:41:1442:-101.775,0,-143.701	0/1:78:48,30:48:1728:30:1068:-72.9517,0,-132.323	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83188	0/0:68:64,4:64:2281:4:144:0,-7.15642,-192.232	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.287	0/1:31:12,19:12:432:19:669:-51.202,0,-29.8715	0/1:54:26,28:26:936:28:1008:-74.7807,0,-68.3038	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.657	0/1:21:11,10:11:392:10:360:-26.394,0,-29.2984	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:57:29,27:29:1032:27:968:-70.2199,0,-75.9711	0/1:33:21,12:21:756:12:432:-29.2872,0,-58.4332	0/1:106:43,63:43:1540:63:2264:-171.336,0,-106.984	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:75:21,54:21:756:54:1932:-151.571,0,-45.79	0/1:29:7,22:7:252:22:792:-62.8758,0,-14.2991	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:6:1,5:1:36:5:180:-14.7412,0,-1.79209	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	1/1:15:1,14:1:36:14:504:-42.0998,-0.917175,0	0/1:46:26,20:26:913:20:720:-51.2814,0,-68.6366	0/0:122:121,1:121:4344:1:36:0,-33.1274,-386.909	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:38:17,21:17:608:21:756:-56.9281,0,-43.6129	0/0:58:56,2:56:1997:2:72:0,-10.623,-173.151	0/1:34:17,17:17:608:17:604:-44.4556,0,-44.817	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:49:22,27:22:792:27:938:-69.9788,0,-56.8529	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.835	0/1:27:6,21:6:216:21:756:-60.2394,0,-11.6627	0/1:62:32,30:32:1152:30:1080:-78.8494,0,-85.3181	0/0:65:65,0:65:2325:0:0:0,-19.5669,-209.508	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:36:35,1:35:1252:1:36:0,-7.2388,-109.387	0/0:47:47,0:47:1688:0:0:0,-14.1484,-151.575	0/1:41:22,19:22:784:19:684:-49.5481,0,-58.5417	0/1:49:12,37:12:432:37:1290:-101.642,0,-24.4707	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/1:35:22,13:22:788:13:464:-31.5476,0,-60.7084	0/0:83:83,0:83:2976:0:0:0,-24.9855,-266.881	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.279	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/1:125:63,62:63:2234:62:2228:-163.155,0,-163.67	0/1:46:17,29:17:612:29:1036:-79.7065,0,-41.5661	0/1:68:39,29:39:1404:29:1044:-73.8044,0,-105.998	0/1:47:25,22:25:900:22:792:-57.4573,0,-67.1726	0/1:58:29,29:29:1040:29:1040:-76.4409,0,-76.4546	0/1:123:52,71:52:1860:71:2548:-192.538,0,-130.653	0/1:68:19,49:19:684:49:1737:-136.143,0,-41.4203	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.427
chr10	9875246	.	T	C	76014.5	PASS	AB=0.483292;ABP=8.81541;AC=139;AF=0.739362;AN=188;AO=3501;CIGAR=1X;DP=4763;DPB=4763;DPRA=0;EPP=6843.7;EPPR=2499.1;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.8155;MQMR=59.9118;NS=94;NUMALT=1;ODDS=2.61205;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124392;QR=45131;RO=1259;RPL=89;RPP=6851.94;RPPR=2499.1;RPR=3412;RUN=1;SAF=3500;SAP=7596.65;SAR=1;SRF=1259;SRP=2736.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:15,7:15:540:7:246:-15.8589,0,-42.3139	1/1:59:0,59:0:0:59:2095:-188.811,-17.7608,0	1/1:37:0,37:0:0:37:1310:-118.192,-11.1381,0	0/1:97:52,45:52:1859:45:1620:-116.879,0,-138.389	0/1:35:17,18:17:612:18:636:-47.0303,0,-44.8774	0/1:29:15,14:15:540:14:487:-35.4226,0,-40.2067	0/1:55:32,23:32:1148:23:816:-57.2051,0,-87.0728	1/1:33:0,33:0:0:33:1179:-106.415,-9.93399,0	0/1:33:22,11:22:788:11:392:-25.6861,0,-61.3108	0/1:47:24,23:24:856:23:828:-60.6957,0,-63.2118	1/1:64:0,64:0:0:64:2279:-205.372,-19.2659,0	0/1:61:26,35:26:936:35:1233:-92.9101,0,-66.1966	1/1:63:0,63:0:0:63:2241:-201.953,-18.9649,0	1/1:69:0,69:0:0:69:2445:-220.294,-20.7711,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	0/1:47:22,25:22:792:25:896:-66.8119,0,-57.4573	1/1:62:0,62:0:0:62:2186:-197.005,-18.6639,0	1/1:51:0,51:0:0:51:1823:-163.405,-15.3525,0	0/1:51:23,28:23:828:28:987:-73.7621,0,-59.487	0/1:76:43,33:43:1539:33:1171:-82.7321,0,-115.924	0/1:122:44,77:44:1576:77:2731:-209.226,0,-105.347	1/1:60:0,60:0:0:60:2134:-192.323,-18.0618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:54:2,52:2:72:52:1851:-159.998,-9.4189,0	0/1:16:14,2:14:504:2:72:-2.02024,0,-40.8736	1/1:93:0,93:0:0:93:3281:-295.398,-27.9958,0	0/1:68:33,35:33:1184:35:1252:-92.4974,0,-86.3983	0/1:30:11,19:11:396:19:675:-52.0461,0,-26.9518	1/1:88:0,87:0:0:87:3097:-278.567,-26.1896,0	0/1:94:35,59:35:1260:59:2086:-158.996,0,-85.4041	1/1:81:0,81:0:0:81:2875:-258.986,-24.3834,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:12:7,5:7:252:5:164:-11.4111,0,-19.4166	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:162:0,162:0:0:162:5748:-517.276,-48.7669,0	0/1:92:39,53:39:1395:53:1887:-142.412,0,-98.1536	0/1:78:29,49:29:1044:49:1760:-135.202,0,-70.7945	1/1:2:0,2:0:0:2:72:-6.83188,-0.60206,0	1/1:67:4,63:4:144:63:2240:-188.545,-6.85539,0	1/1:46:0,46:0:0:46:1641:-147.944,-13.8474,0	0/1:29:17,12:17:608:12:432:-30.4736,0,-46.3222	0/1:54:28,26:28:999:26:924:-67.222,0,-73.9689	1/1:39:0,39:0:0:39:1386:-125.037,-11.7402,0	0/1:22:11,11:11:392:11:396:-29.3601,0,-28.9688	1/1:60:0,60:0:0:60:2153:-194.037,-18.0618,0	1/1:49:0,49:0:0:49:1726:-155.623,-14.7505,0	0/1:57:28,29:28:1004:29:1015:-74.5004,0,-73.5172	0/1:34:12,22:12:432:22:779:-60.197,0,-28.9862	0/1:108:62,46:62:2219:46:1637:-115.107,0,-166.685	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:73:52,21:52:1847:21:752:-46.0311,0,-144.526	0/1:29:22,7:22:792:7:244:-13.5696,0,-62.8758	1/1:7:0,7:0:0:7:252:-23.0207,-2.10721,0	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7412	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/0:15:14,1:14:500:1:36:0,-0.917175,-41.7379	0/1:44:19,25:19:684:25:866:-65.0069,0,-48.645	1/1:120:1,119:1:36:119:4239:-378.093,-32.5253,0	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:37:21,16:21:756:16:572:-40.6753,0,-57.2291	1/1:58:2,55:2:72:55:1933:-167.407,-10.6818,0	0/1:34:17,17:17:608:17:608:-44.817,0,-44.817	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:47:26,21:26:936:21:741:-52.8639,0,-70.4111	1/1:59:0,59:0:0:59:2073:-186.801,-17.7608,0	0/1:27:21,6:21:752:6:216:-11.6627,0,-59.8784	0/1:64:31,33:31:1116:33:1175:-86.7891,0,-81.4858	1/1:66:0,66:0:0:66:2352:-211.926,-19.868,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:58:0,58:0:0:58:2062:-185.85,-17.4597,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:35:0,35:0:0:35:1243:-112.175,-10.5361,0	1/1:46:0,46:0:0:46:1637:-147.509,-13.8474,0	0/1:41:19,22:19:680:22:775:-57.729,0,-49.1869	0/1:49:37,12:37:1315:12:420:-23.3836,0,-103.882	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:59:0,59:0:0:59:2115:-190.618,-17.7608,0	0/1:34:12,22:12:428:22:784:-60.6485,0,-28.6238	1/1:80:0,80:0:0:80:2846:-256.378,-24.0824,0	1/1:99:0,99:0:0:99:3476:-313.043,-29.802,0	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:92:0,92:0:0:92:3272:-294.702,-27.6948,0	0/1:122:62,60:62:2215:60:2139:-156.028,0,-162.888	0/1:46:28,18:28:1008:18:644:-44.4432,0,-77.189	0/1:67:28,39:28:1004:39:1392:-105.363,0,-70.5065	0/1:47:22,25:22:792:25:900:-67.1726,0,-57.4573	0/1:58:29,29:29:1044:29:1040:-76.4546,0,-76.8013	0/1:120:70,50:70:2503:50:1759:-122.468,0,-189.397	0/1:68:49,19:49:1764:19:676:-40.698,0,-138.574	1/1:37:0,37:0:0:37:1327:-119.732,-11.1381,0	1/1:77:0,77:0:0:77:2706:-243.785,-23.1793,0
chr10	10249450	.	T	C	148143	PASS	AB=0.524088;ABP=24.5605;AC=137;AF=0.728723;AN=188;AO=7001;CIGAR=1X;DP=9082;DPB=9082;DPRA=12.9847;EPP=15188.1;EPPR=4517.5;GTI=2;LEN=1;MEANALT=1.02198;MQM=59.9874;MQMR=59.9683;NS=94;NUMALT=1;ODDS=1.55929;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250422;QR=74435;RO=2079;RPL=0;RPP=15205.5;RPPR=4517.5;RPR=7001;RUN=1;SAF=6999;SAP=15188.1;SAR=2;SRF=2079;SRP=4517.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:15,23:15:536:23:824:-63.0442,0,-37.1357	1/1:165:1,164:1:36:164:5855:-523.465,-46.0717,0	1/1:107:0,107:0:0:107:3836:-345.436,-32.2102,0	0/1:196:88,108:88:3160:108:3863:-288.864,0,-225.622	0/1:80:49,31:49:1760:31:1085:-73.8746,0,-134.601	0/1:54:33,21:33:1180:21:756:-52.094,0,-90.2524	0/1:127:54,73:54:1910:73:2608:-196.738,0,-133.913	1/1:153:1,152:1:36:152:5425:-484.781,-42.4593,0	0/1:108:61,47:61:2177:47:1692:-120.056,0,-163.683	0/1:78:22,56:22:792:56:2004:-157.153,0,-48.1253	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	0/1:85:43,42:43:1544:42:1504:-110.067,0,-113.666	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:88:0,88:0:0:88:3130:-281.926,-26.4906,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	0/1:58:29,29:29:1044:29:1031:-75.6429,0,-76.8151	1/1:72:0,72:0:0:72:2562:-230.829,-21.6742,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:41:24,17:24:864:17:612:-43.0712,0,-65.7403	0/1:164:81,83:81:2916:83:2976:-218.703,0,-213.305	0/1:132:69,63:69:2461:63:2256:-163.567,0,-182.007	1/1:118:0,118:0:0:118:4199:-378.093,-35.5215,0	1/1:92:0,92:0:0:92:3283:-295.69,-27.6948,0	1/1:120:9,111:9:324:111:3968:-327.806,-6.61775,0	0/1:70:32,38:32:1152:38:1364:-101.989,0,-82.918	1/1:312:0,312:0:0:312:11178:-1005.9,-93.9214,0	0/1:225:94,131:94:3384:131:4691:-354.618,0,-237.042	0/1:33:16,17:16:576:17:608:-45.118,0,-42.241	1/1:268:0,268:0:0:268:9604:-864.312,-80.676,0	0/1:152:77,75:77:2745:75:2692:-196.768,0,-201.512	1/1:104:0,104:0:0:104:3720:-335.002,-31.3071,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:15:6,9:6:208:9:312:-23.8999,0,-14.5436	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	1/1:257:0,257:0:0:257:9228:-830.485,-77.3647,0	0/1:212:100,112:100:3558:112:4004:-296.732,0,-256.608	0/1:83:37,46:37:1332:46:1639:-122.812,0,-95.1969	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:163:6,157:6:201:157:5612:-486.785,-30.6508,0	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	0/1:149:68,81:68:2425:81:2897:-216.111,0,-173.651	0/1:88:37,51:37:1319:51:1824:-137.95,0,-92.5205	1/1:76:0,76:0:0:76:2693:-242.606,-22.8783,0	0/1:80:37,43:37:1332:43:1548:-115.531,0,-96.1	1/1:143:0,143:0:0:143:5093:-458.506,-43.0473,0	1/1:154:2,152:2:72:152:5420:-481.096,-39.5219,0	0/1:124:46,78:46:1644:78:2788:-213.833,0,-110.921	0/1:116:46,70:46:1656:70:2508:-191.053,0,-114.409	0/1:142:75,67:75:2692:67:2400:-173.511,0,-199.778	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:131:61,70:61:2184:70:2512:-186.897,0,-157.391	0/1:43:17,26:17:612:26:928:-70.894,0,-42.4691	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:116:0,116:0:0:116:4160:-374.582,-34.9195,0	0/1:50:33,17:33:1188:17:612:-40.3619,0,-92.1771	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:70:37,33:37:1328:33:1188:-86.1565,0,-98.7501	1/1:108:0,108:0:0:108:3872:-348.603,-32.5112,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:130:63,67:63:2268:67:2400:-177.123,0,-164.878	1/1:210:0,210:0:0:210:7520:-676.841,-63.2163,0	0/1:83:36,47:36:1269:47:1676:-126.142,0,-89.5253	1/1:100:0,100:0:0:100:3552:-319.888,-30.103,0	0/1:143:76,67:76:2702:67:2404:-173.569,0,-200.374	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	0/1:27:13,14:13:468:14:500:-37.2084,0,-34.3318	0/1:77:34,43:34:1212:43:1548:-116.434,0,-86.207	1/1:85:0,85:0:0:85:3026:-272.57,-25.5876,0	1/1:25:0,25:0:0:25:892:-80.5973,-7.52575,0	1/1:104:0,104:0:0:104:3706:-333.742,-31.3071,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:154:0,154:0:0:154:5520:-496.925,-46.3586,0	1/1:157:0,157:0:0:157:5620:-505.913,-47.2617,0	0/1:120:64,56:64:2277:56:2016:-145.589,0,-169.067	0/1:97:44,53:44:1576:53:1900:-142.078,0,-112.932	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:109:0,108:0:0:108:3864:-347.596,-32.5112,0	0/1:100:53,47:53:1900:47:1672:-120.664,0,-141.175	1/1:225:0,224:0:0:224:8028:-722.321,-67.4307,0	1/1:92:0,92:0:0:92:3278:-295.24,-27.6948,0	1/1:71:0,71:0:0:71:2545:-229.3,-21.3731,0	1/1:90:1,89:1:36:89:3183:-283.096,-23.4944,0	0/1:152:62,90:62:2219:90:3224:-244.625,0,-154.217	0/1:46:23,23:23:828:23:813:-59.6426,0,-60.9967	0/1:77:31,46:31:1116:46:1656:-126.149,0,-77.5724	0/1:80:36,44:36:1296:44:1571:-117.598,0,-92.8615	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9907	0/1:86:44,42:44:1580:42:1500:-109.406,0,-116.603	0/1:72:47,25:47:1688:25:900:-59.6469,0,-130.533	1/1:126:1,125:1:36:125:4452:-397.255,-34.3315,0	1/1:124:0,124:0:0:124:4429:-398.782,-37.3277,0
chr10	10249467	.	T	C	33602.1	PASS	AB=0.472533;ABP=31.1626;AC=51;AF=0.271277;AN=188;AO=2077;CIGAR=1X;DP=9141;DPB=9141;DPRA=1.11156;EPP=4495.8;EPPR=15091.4;GTI=2;LEN=1;MEANALT=1.03571;MQM=59.9547;MQMR=59.9785;NS=94;NUMALT=1;ODDS=1.74702;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73968;QR=252769;RO=7060;RPL=2;RPP=4495.8;RPPR=15108.6;RPR=2075;RUN=1;SAF=2077;SAP=4513.16;SAR=0;SRF=7058;SRP=15316.2;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:24,16:24:864:16:563:-38.958,0,-66.0414	0/0:167:167,0:167:5991:0:0:0,-50.272,-539.293	0/0:108:108,0:108:3871:0:0:0,-32.5112,-348.584	0/1:195:107,88:107:3827:88:3142:-224.304,0,-285.926	0/1:79:31,48:31:1107:48:1710:-130.403,0,-76.1588	0/1:56:20,36:20:716:36:1267:-97.4729,0,-47.91	0/1:125:71,54:71:2533:54:1923:-135.61,0,-190.591	0/0:156:155,1:155:5564:1:36:0,-43.3624,-497.284	0/1:108:47,61:47:1683:61:2171:-163.144,0,-119.245	0/1:78:56,22:56:2012:22:784:-47.4036,0,-157.873	0/0:81:81,0:81:2889:0:0:0,-24.3834,-260.245	0/1:87:43,44:43:1525:44:1559:-114.411,0,-111.351	0/0:59:57,2:57:2039:2:72:0,-10.924,-176.945	0/0:91:91,0:91:3245:0:0:0,-27.3937,-291.953	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:57:29,28:29:1031:28:1008:-73.8776,0,-75.9439	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:55:54,0:54:1936:0:0:0,-16.2556,-174.157	0/1:41:17,24:17:608:24:855:-64.9279,0,-42.7098	0/1:165:86,79:86:3076:79:2827:-204.998,0,-226.622	0/1:132:63,69:63:2255:69:2447:-180.75,0,-163.476	0/0:118:118,0:118:4219:0:0:0,-35.5215,-379.89	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:119:110,9:110:3943:9:313:0,-7.31749,-326.556	0/1:71:41,30:41:1457:30:1072:-75.4193,0,-110.051	0/0:319:318,1:318:11406:1:36:0,-92.4303,-1022.81	0/1:223:131,92:131:4699:92:3292:-229.37,0,-355.939	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/0:270:269,1:269:9656:1:36:0,-77.6798,-865.389	0/1:152:76,76:76:2719:76:2720:-199.265,0,-199.196	0/0:106:106,0:106:3795:0:0:0,-31.9092,-341.747	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/0:257:257,0:257:9199:0:0:0,-77.3647,-827.88	0/1:215:112,103:112:4006:103:3674:-266.142,0,-296.007	0/1:84:46,38:46:1656:38:1341:-95.7015,0,-124.042	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:162:156,6:156:5568:6:216:0,-28.9763,-481.453	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:154:85,69:85:3052:69:2459:-175.206,0,-228.547	0/1:88:49,39:49:1760:39:1385:-98.4571,0,-132.193	0/0:75:75,0:75:2658:0:0:0,-22.5772,-239.463	0/1:81:45,36:45:1620:36:1284:-91.48,0,-121.707	0/0:143:143,0:143:5115:0:0:0,-43.0473,-460.47	0/0:153:151,2:151:5407:2:72:0,-39.2209,-479.923	0/1:124:78,46:78:2787:46:1639:-110.47,0,-213.742	0/1:114:70,43:70:2512:43:1531:-103.706,0,-191.956	0/1:143:67,76:67:2399:76:2710:-201.096,0,-173.119	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:132:72,60:72:2575:60:2139:-153.041,0,-192.263	0/1:41:25,15:25:896:15:536:-36.174,0,-68.5594	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:118:117,1:117:4174:1:36:0,-31.9233,-372.244	0/1:50:16,34:16:576:34:1203:-93.5235,0,-37.1235	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:69:33,36:33:1188:36:1264:-93.2896,0,-86.4575	0/0:108:108,0:108:3871:0:0:0,-32.5112,-348.267	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:131:69,62:69:2464:62:2202:-158.878,0,-182.58	0/0:215:215,0:215:7702:0:0:0,-64.7214,-693.212	0/1:83:45,38:45:1616:38:1356:-97.355,0,-120.745	0/0:100:99,0:99:3509:0:0:0,-29.802,-315.82	0/1:144:66,78:66:2360:78:2753:-204.395,0,-169.31	0/0:93:93,0:93:3335:0:0:0,-27.9958,-300.366	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/1:76:42,34:42:1508:34:1220:-87.2285,0,-113.136	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.622	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0802	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:154:154,0:154:5500:0:0:0,-46.3586,-495.128	0/0:157:157,0:157:5635:0:0:0,-47.2617,-507.261	0/1:132:67,65:67:2404:65:2291:-166.716,0,-176.881	0/1:96:53,43:53:1896:43:1514:-107.653,0,-142.019	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:111:111,0:111:3983:0:0:0,-33.4143,-358.659	0/1:98:46,52:46:1644:52:1864:-138.538,0,-118.748	0/0:229:229,0:229:8192:0:0:0,-68.9359,-736.922	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.12	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:153:92,61:92:3278:61:2179:-150.318,0,-249.182	0/1:47:23,24:23:824:24:860:-63.5734,0,-60.3349	0/1:76:47,29:47:1692:29:1036:-70.6756,0,-129.689	0/1:82:46,36:46:1643:36:1283:-91.0882,0,-123.473	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2753	0/1:88:44,44:44:1562:44:1560:-114.198,0,-114.38	0/1:72:25,47:25:892:47:1688:-130.533,0,-58.9255	0/0:122:122,0:122:4359:0:0:0,-36.7257,-392.485	0/0:124:124,0:124:4439:0:0:0,-37.3277,-399.68
chr10	10249501	.	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chr10	10249528	.	T	C	27976.9	PASS	AB=0.455746;ABP=67.3943;AC=50;AF=0.265957;AN=188;AO=1744;CIGAR=1X;DP=7979;DPB=7979;DPRA=0.879058;EPP=3781.38;EPPR=13485.7;GTI=3;LEN=1;MEANALT=1.03571;MQM=56.6462;MQMR=59.7818;NS=94;NUMALT=1;ODDS=2.84835;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62343;QR=220782;RO=6233;RPL=3;RPP=3764.05;RPPR=13356;RPR=1741;RUN=1;SAF=2;SAP=3772.71;SAR=1742;SRF=15;SRP=13407.8;SRR=6218;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:31,19:31:1096:19:669:-45.4437,0,-83.8847	0/0:54:54,0:54:1902:0:0:0,-16.2556,-171.451	0/0:117:117,0:117:4132:0:0:0,-35.2205,-371.871	0/1:162:100,62:100:3539:62:2222:-151.008,0,-269.928	0/1:38:15,23:15:527:23:813:-61.8806,0,-36.321	0/1:38:21,17:21:737:17:612:-43.9602,0,-55.2111	0/1:83:39,44:39:1388:44:1570:-115.47,0,-100.231	0/0:133:133,0:133:4714:0:0:0,-40.037,-424.268	0/1:65:44,21:44:1572:21:752:-48.3502,0,-122.182	0/1:71:37,34:37:1309:34:1224:-88.7519,0,-96.7317	0/0:82:82,0:82:2887:0:0:0,-24.6845,-260.064	0/1:105:54,51:54:1925:51:1797:-130.25,0,-141.911	0/0:66:66,0:66:2345:0:0:0,-19.868,-211.289	0/0:55:54,1:54:1932:1:36:0,-12.9584,-170.554	0/0:61:61,0:61:2105:0:0:0,-18.3628,-189.704	0/1:51:30,21:30:1064:21:744:-51.7115,0,-80.716	0/0:66:66,0:66:2330:0:0:0,-19.868,-209.952	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/1:42:25,16:25:881:16:576:-39.4556,0,-66.8943	0/1:117:65,52:65:2265:52:1859:-131.25,0,-168.883	0/1:147:83,64:83:2957:64:2272:-158.802,0,-222.077	0/0:91:91,0:91:3226:0:0:0,-27.3937,-290.553	0/0:78:78,0:78:2774:0:0:0,-23.4803,-249.81	0/0:80:76,4:76:2698:4:144:0,-10.7751,-229.744	0/1:74:44,30:44:1561:30:1072:-74.4359,0,-118.172	0/0:229:229,0:229:8079:0:0:0,-68.9359,-727.123	0/1:201:105,96:105:3703:96:3448:-249.228,0,-272.947	0/1:30:16,14:16:576:14:504:-36.65,0,-43.1394	0/0:219:219,0:219:7750:0:0:0,-65.9256,-697.26	0/1:94:56,38:56:1989:38:1348:-93.1386,0,-150.492	0/0:114:114,0:114:4060:0:0:0,-34.3174,-365.575	0/0:12:12,0:12:402:0:0:0,-3.61236,-36.4992	0/1:6:5,1:5:180:1:36:-1.7895,0,-14.7459	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7871	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/1:7:2,5:2:68:5:180:-14.4421,0,-4.3505	0/0:210:210,0:210:7421:0:0:0,-63.2163,-667.843	0/1:130:60,70:60:2107:70:2516:-187.402,0,-150.688	0/1:71:23,48:23:820:48:1715:-133.147,0,-52.7494	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:126:123,3:123:4355:3:108:0,-27.8594,-382.033	0/0:47:47,0:47:1653:0:0:0,-14.1484,-149.056	0/1:124:68,56:68:2399:56:2008:-143.426,0,-178.811	0/1:81:51,30:51:1805:30:1032:-68.7372,0,-138.344	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.613	0/1:94:58,36:58:2046:36:1292:-88.2555,0,-156.041	0/0:93:93,0:93:3279:0:0:0,-27.9958,-295.326	0/0:150:150,0:150:5286:0:0:0,-45.1545,-475.858	0/1:111:74,37:74:2584:37:1317:-84.0704,0,-199.386	0/1:108:65,43:65:2317:43:1548:-106.929,0,-176.275	0/1:130:62,68:62:2202:68:2440:-180.552,0,-159.199	0/1:11:7,4:7:252:4:144:-9.99269,0,-19.7176	0/1:73:42,31:42:1508:31:1112:-78.3888,0,-114.03	0/1:61:29,32:29:1040:32:1139:-84.4162,0,-75.5506	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:147:147,0:147:5264:0:0:0,-44.2514,-473.888	0/1:51:25,26:25:900:26:936:-69.1687,0,-65.1868	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:6:4,2:4:144:2:72:-5.02863,0,-11.5074	0/1:82:43,39:43:1533:39:1391:-100.685,0,-113.566	0/0:136:133,2:133:4760:2:72:0,-34.1606,-420.994	1/1:5:0,5:0:0:5:180:-16.5401,-1.50515,0	0/1:150:75,75:75:2636:75:2696:-197.454,0,-192.323	0/0:105:105,0:105:3737:0:0:0,-31.6081,-336.427	0/1:41:18,23:18:648:23:806:-60.4505,0,-46.3066	0/0:100:100,0:100:3577:0:0:0,-30.103,-321.964	0/1:155:79,76:79:2805:76:2721:-197.411,0,-205.953	0/0:94:92,2:92:3255:2:72:0,-21.465,-286.334	0/1:27:18,9:18:644:9:324:-21.2959,0,-50.1628	0/1:55:31,24:31:1093:24:864:-61.5055,0,-82.121	0/0:55:55,0:55:1866:0:0:0,-16.5566,-168.206	0/0:30:30,0:30:1042:0:0:0,-9.0309,-94.0679	0/0:109:109,0:109:3889:0:0:0,-32.8123,-350.198	0/0:76:76,0:76:2683:0:0:0,-22.8783,-241.083	0/0:157:156,1:156:5566:1:36:0,-43.6651,-497.447	0/0:103:103,0:103:3658:0:0:0,-31.0061,-329.402	0/1:92:52,40:52:1830:40:1432:-101.199,0,-137.281	0/1:69:42,27:42:1508:27:953:-65.2586,0,-115.244	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:84:84,0:84:2982:0:0:0,-25.2865,-268.607	0/1:114:62,52:62:2171:52:1864:-133.6,0,-161.303	0/0:262:262,0:262:9298:0:0:0,-78.8699,-836.767	0/0:101:101,0:101:3577:0:0:0,-30.404,-322.124	0/0:65:64,1:64:2257:1:36:0,-15.9713,-199.755	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.66	0/1:124:57,67:57:2033:67:2408:-179.429,0,-145.903	0/1:30:15,15:15:521:15:536:-39.3188,0,-38.1854	0/1:64:40,24:40:1417:24:860:-58.4388,0,-108.559	0/1:89:51,38:51:1809:38:1356:-95.5172,0,-136.295	0/1:50:24,26:24:860:26:932:-68.7539,0,-62.6703	0/1:139:82,57:82:2883:57:2035:-141.164,0,-217.809	0/1:64:26,38:26:902:38:1368:-104.067,0,-62.2221	0/0:141:141,0:141:5002:0:0:0,-42.4452,-449.298	0/0:111:111,0:111:3969:0:0:0,-33.4143,-357.395
chr10	10954903	.	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chr10	10955094	.	GA	AA	27940.5	PASS	AB=0.529638;ABP=26.8227;AC=48;AF=0.258065;AN=186;AO=1663;CIGAR=1X1M;DP=6225;DPB=6225;DPRA=0.955328;EPP=3605.49;EPPR=9761.93;GTI=1;LEN=1;MEANALT=1.12963;MQM=49.086;MQMR=59.1595;NS=93;NUMALT=1;ODDS=0.0819082;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59422;QR=160755;RO=4546;RPL=1662;RPP=3605.49;RPPR=9761.93;RPR=1;RUN=1;SAF=0;SAP=3614.17;SAR=1663;SRF=0;SRP=9874.52;SRR=4546;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:78:33,45:33:1140:45:1594:-118.939,0,-79.4031	0/0:37:35,2:35:1217:2:72:0,-4.36117,-102.979	0/0:205:205,0:205:7214:0:0:0,-61.7111,-648.781	0/1:148:64,84:64:2285:84:3016:-225.873,0,-161.022	0/1:53:23,30:23:821:30:1071:-79.9594,0,-58.219	0/1:50:27,23:27:953:23:814:-57.3957,0,-71.0213	0/1:57:30,27:30:1078:27:963:-69.2647,0,-79.6075	0/0:105:105,0:105:3674:0:0:0,-31.6081,-330.639	0/1:141:68,72:68:2407:72:2565:-186.287,0,-173.526	0/1:42:17,25:17:610:25:892:-67.7027,0,-42.5896	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:37:19,18:19:669:18:648:-46.9844,0,-49.3507	0/0:25:25,0:25:882:0:0:0,-7.52575,-79.6931	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:23:23,0:23:826:0:0:0,-6.92369,-74.6629	0/1:19:10,9:10:356:9:324:-23.6263,0,-26.6333	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6484	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1741	0/1:8:7,1:7:250:1:36:-1.15857,0,-20.4384	0/1:172:89,83:89:3167:83:2972:-214.802,0,-233.212	0/1:87:37,49:37:1291:49:1751:-130.611,0,-90.2049	0/0:161:161,0:161:5664:0:0:0,-48.4658,-509.354	0/0:110:109,1:109:3862:1:36:0,-29.5268,-343.937	0/0:48:48,0:48:1674:0:0:0,-14.4494,-150.804	0/1:73:30,43:30:1056:43:1548:-116.394,0,-73.3336	0/0:225:225,0:225:7956:0:0:0,-67.7317,-715.976	0/1:167:78,87:78:2715:87:3111:-228.783,0,-194.617	0/1:21:10,11:10:349:11:396:-29.4552,0,-25.4201	0/0:192:191,0:191:6813:0:0:0,-57.4967,-612.719	0/1:84:41,43:41:1457:43:1527:-111.43,0,-104.231	0/0:86:86,0:86:3028:0:0:0,-25.8886,-272.416	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:7:1,6:1:36:6:216:-17.576,0,-1.49106	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:3,1:3:108:1:36:-2.36269,0,-8.82461	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.345	0/1:153:63,89:63:2245:89:3186:-238.386,0,-155.92	0/1:15:7,8:7:248:8:288:-21.5223,0,-18.149	.:.:.:.:.:.:.:.	0/0:78:76,2:76:2728:2:72:0,-16.6807,-238.915	0/0:9:9,0:9:300:0:0:0,-2.70927,-27.3206	0/1:185:93,92:93:3290:92:3280:-236.799,0,-240.344	0/1:18:9,9:9:324:9:324:-23.9906,0,-24.0873	0/0:22:22,0:22:787:0:0:0,-6.62266,-71.1545	0/1:106:41,65:41:1457:65:2312:-175.449,0,-99.4664	0/0:72:71,0:71:2512:0:0:0,-21.3731,-226.012	0/0:160:160,0:160:5659:0:0:0,-48.1648,-508.871	0/1:64:35,29:35:1227:29:1044:-74.3414,0,-91.4051	0/1:78:29,49:29:1027:49:1760:-134.33,0,-69.2323	0/1:69:36,33:36:1287:33:1184:-85.8046,0,-95.2857	0/1:6:2,4:2:72:4:144:-11.4638,0,-5.03054	0/1:156:77,79:77:2732:79:2806:-201.96,0,-198.795	0/1:45:21,24:21:741:24:839:-62.0386,0,-53.4373	0/0:8:8,0:8:265:0:0:0,-2.40824,-24.0808	0/0:93:93,0:93:3199:0:0:0,-27.9958,-287.872	0/1:40:17,20:17:612:20:712:-52.2688,0,-43.8748	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.74593	0/1:11:7,4:7:252:4:144:-9.98341,0,-19.7158	0/1:94:51,43:51:1793:43:1535:-109.404,0,-133.343	0/0:48:47,1:47:1666:1:36:0,-10.8707,-146.345	0/1:5:2,3:2:72:3:108:-8.537,0,-5.33157	0/1:156:63,93:63:2206:93:3340:-253.074,0,-151.778	0/0:159:159,0:159:5652:0:0:0,-47.8638,-508.475	0/1:42:20,22:20:705:22:775:-56.7843,0,-51.1021	0/0:73:73,0:73:2602:0:0:0,-21.9752,-234.331	0/1:138:55,82:55:1961:82:2940:-222.101,0,-135.142	0/0:93:90,3:90:3208:3:108:0,-17.9536,-278.865	0/1:8:4,4:4:144:4:144:-10.8332,0,-10.9054	0/1:54:23,31:23:802:31:1100:-81.6889,0,-56.0764	0/0:28:28,0:28:997:0:0:0,-8.42884,-90.0226	0/0:9:9,0:9:322:0:0:0,-2.70927,-29.3242	0/0:125:124,0:124:4354:0:0:0,-37.3277,-390.983	0/0:51:50,0:50:1776:0:0:0,-15.0515,-159.666	0/0:147:147,0:147:5154:0:0:0,-44.2514,-463.437	0/0:73:73,0:73:2598:0:0:0,-21.9752,-234.045	0/1:110:51,58:51:1786:58:2065:-150.904,0,-127.216	0/1:43:16,27:16:574:27:960:-73.0548,0,-38.4164	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:58:57,1:57:2026:1:36:0,-13.881,-178.953	0/1:73:43,30:43:1525:30:1070:-73.5344,0,-115.444	0/0:258:256,0:256:9024:0:0:0,-77.0637,-811.619	0/0:29:29,0:29:1042:0:0:0,-8.72987,-94.0771	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9141	0/0:12:12,0:12:427:0:0:0,-3.61236,-38.7681	0/1:51:23,28:23:826:28:1004:-74.5619,0,-59.3065	0/1:15:7,8:7:252:8:288:-21.4805,0,-18.5135	0/1:35:23,12:23:810:12:430:-27.9173,0,-62.6364	0/1:34:15,19:15:533:19:684:-51.0396,0,-37.8374	0/1:8:4,4:4:144:4:144:-10.8332,0,-10.9054	0/1:32:20,12:20:705:12:432:-29.1215,0,-54.1401	0/1:29:14,15:14:484:15:540:-39.852,0,-35.1576	0/0:62:62,0:62:2179:0:0:0,-18.6639,-196.203	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.267
chr10	11790655	.	GACGGA	AATGGA,AACGGA	229165	PASS	AB=0.474394,0.517952;ABP=34.259,18.3689;AC=136,50;AF=0.731183,0.268817;AN=186;AO=7939,2864;CIGAR=1X1M1X3M,1X5M;DP=10895;DPB=10895.5;DPRA=13.1473,1.03225;EPP=17077.7,6144.18;EPPR=0;GTI=1;LEN=6,1;MEANALT=2.42391,2.75;MQM=59.912,59.9986;MQMR=0;NS=93;NUMALT=2;ODDS=5.65585;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=24,24;PQR=0;PRO=0;QA=278093,102459;QR=0;RO=0;RPL=7921,2855;RPP=17086.3,6144.18;RPPR=0;RPR=18,9;RUN=1,1;SAF=1,0;SAP=17233.6,6222.11;SAR=7938,2864;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,25,19:0:0:25,19:878,648:-124.383,-52.9175,-45.3918,-71.811,0,-66.0914	1/1:154:0,154,0:0:0:154,0:5384,0:-484.695,-46.3586,0,-484.695,-46.3586,-484.695	1/1:142:0,140,1:0:0:140,1:4901,36:-440.882,-42.1442,0,-437.945,-39.2068,-437.644	1/2:277:0,142,132:0:0:142,132:4982,4715:-789.865,-384.437,-341.691,-405.445,0,-365.709	1/2:54:0,19,35:0:0:19,35:674,1256:-157.721,-102.809,-97.0897,-55.2674,0,-44.7313	1/2:44:0,30,14:0:0:30,14:1043,504:-126.269,-41.4837,-32.4528,-85.1414,0,-80.9269	1/2:147:0,72,71:0:0:72,71:2521,2528:-411.159,-206.05,-184.375,-205.115,0,-183.742	1/1:136:0,133,0:0:0:133,0:4645,0:-417.942,-40.037,0,-417.942,-40.037,-417.942	1/2:80:0,35,45:0:0:35,45:1223,1616:-231.66,-132.184,-121.648,-99.8295,0,-86.2832	1/2:93:0,41,52:0:0:41,52:1402,1860:-265.804,-152.026,-139.684,-114.127,0,-98.4735	1/1:78:0,77,0:0:0:77,0:2676,0:-240.803,-23.1793,0,-240.803,-23.1793,-240.803	1/2:99:0,53,46:0:0:53,46:1841,1656:-285.123,-135.481,-119.526,-149.996,0,-136.149	1/1:82:0,82,0:0:0:82,0:2917,0:-262.696,-24.6845,0,-262.696,-24.6845,-262.696	1/1:59:0,58,0:0:0:58,0:2045,0:-183.96,-17.4597,0,-183.96,-17.4597,-183.96	1/1:73:0,71,0:0:0:71,0:2522,0:-226.915,-21.3731,0,-226.915,-21.3731,-226.915	1/2:69:0,32,34:0:0:32,34:1106,1220:-189.396,-99.5367,-89.9037,-89.8759,0,-79.6409	1/1:87:0,85,0:0:0:85,0:2936,0:-263.998,-25.5876,0,-263.998,-25.5876,-263.998	1/1:61:0,61,0:0:0:61,0:2163,0:-194.936,-18.3628,0,-194.936,-18.3628,-194.936	1/2:48:0,15,32:0:0:15,32:525,1148:-136.347,-93.6371,-89.1216,-42.7034,0,-33.0704	1/2:479:0,258,218:0:0:258,218:8965,7819:-1366.68,-637.85,-560.185,-728.921,0,-663.296	1/2:227:0,109,117:0:0:109,117:3794,4195:-650.652,-342.16,-309.347,-308.495,0,-273.275	1/1:119:0,119,0:0:0:119,0:4224,0:-380.341,-35.8226,0,-380.341,-35.8226,-380.341	1/1:71:0,71,0:0:0:71,0:2508,0:-225.865,-21.3731,0,-225.865,-21.3731,-225.865	1/1:146:0,141,4:0:0:141,4:4940,144:-444.41,-42.4452,0,-432.66,-30.6237,-431.455	1/2:142:0,56,86:0:0:56,86:1959,3083:-411.181,-251.809,-234.952,-159.725,0,-133.836	1/1:368:0,359,0:0:0:359,0:12544,0:-1128.46,-108.07,0,-1128.46,-108.07,-1128.46	1/2:239:0,109,129:0:0:109,129:3789,4603:-683.299,-375.281,-342.469,-308.049,0,-269.216	1/2:50:0,19,30:0:0:19,30:684,1076:-143.574,-87.7622,-82.0426,-55.8109,0,-46.78	1/1:427:0,421,0:0:0:421,0:14640,0:-1317.05,-126.734,0,-1317.05,-126.734,-1317.05	1/2:120:0,64,56:0:0:64,56:2182,2008:-341.162,-164.136,-144.87,-177.377,0,-160.519	1/1:94:0,93,1:0:0:93,1:3277,36:-294.792,-27.9958,0,-291.854,-24.6985,-291.553	1/1:10:0,10,0:0:0:10,0:350,0:-31.8362,-3.0103,0,-31.8362,-3.0103,-31.8362	1/2:18:0,10,8:0:0:10,8:360,288:-53.2333,-23.8592,-20.8489,-29.734,0,-27.3258	.:.:.:.:.:.:.:.	1/1:8:0,8,0:0:0:8,0:285,0:-25.9944,-2.40824,0,-25.9944,-2.40824,-25.9944	1/2:9:0,6,3:0:0:6,3:216,108:-26.7966,-9.17208,-7.3659,-17.9843,0,-17.0812	1/1:239:0,237,1:0:0:237,1:8353,36:-751.429,-71.3441,0,-748.491,-68.4067,-748.19	1/2:197:0,85,111:0:0:85,111:2987,3988:-568.561,-325.443,-299.856,-243.221,0,-209.806	1/2:81:0,44,37:0:0:44,37:1538,1319:-232.979,-107.873,-94.6277,-125.459,0,-114.321	2/2:9:0,0,9:0:0:0,9:0,324:-29.5059,-29.5059,-29.5059,-2.70927,-2.70927,0	1/1:177:0,172,3:0:0:172,3:6036,108:-543.039,-51.7772,0,-534.227,-42.8907,-533.324	1/1:60:0,59,0:0:0:59,0:2047,0:-184.135,-17.7608,0,-184.135,-17.7608,-184.135	1/2:243:0,100,140:0:0:100,140:3523,4977:-692.454,-405.631,-375.528,-286.871,0,-244.727	1/2:102:0,48,54:0:0:48,54:1708,1932:-297.1,-157.901,-143.452,-139.555,0,-123.3	1/1:80:0,80,0:0:0:80,0:2836,0:-255.479,-24.0824,0,-255.479,-24.0824,-255.479	1/2:99:0,45,53:0:0:45,53:1594,1896:-284.451,-154.604,-141.057,-129.843,0,-113.888	1/1:107:0,107,0:0:0:107,0:3732,0:-336.073,-32.2102,0,-336.073,-32.2102,-336.073	1/1:178:0,178,0:0:0:178,0:6230,0:-560.803,-53.5833,0,-560.803,-53.5833,-560.803	1/2:150:0,67,83:0:0:67,83:2318,2961:-430.05,-241.738,-221.569,-188.663,0,-163.677	1/2:138:0,68,70:0:0:68,70:2372,2516:-398.532,-205.619,-185.149,-193.267,0,-172.195	1/2:254:0,107,146:0:0:107,146:3751,5227:-731.535,-426.307,-394.096,-305.271,0,-261.321	1/2:6:0,3,3:0:0:3,3:100,108:-17.2523,-9.17208,-8.26899,-8.42677,0,-7.52368	1/2:220:0,127,91:0:0:127,91:4463,3263:-629.425,-266.175,-227.944,-363.284,0,-335.891	1/2:22:0,14,8:0:0:14,8:504,288:-64.983,-23.8592,-19.6447,-41.4837,0,-39.0754	1/1:14:0,14,0:0:0:14,0:493,0:-44.7022,-4.21442,0,-44.7022,-4.21442,-44.7022	1/1:195:0,195,0:0:0:195,0:6867,0:-618.105,-58.7009,0,-618.105,-58.7009,-618.105	1/2:27:0,17,10:0:0:17,10:572,360:-76.0621,-2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chr10	12399366	.	C	A	184576	PASS	AB=0.479984;ABP=20.8303;AC=136;AF=0.723404;AN=188;AO=7241;CIGAR=1X;DP=9917;DPB=9917;DPRA=0;EPP=5230.21;EPPR=3507.53;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.7876;MQMR=59.9892;NS=94;NUMALT=1;ODDS=1.10403;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=259790;QR=95674;RO=2673;RPL=5708;RPP=5230.21;RPPR=3507.53;RPR=1533;RUN=1;SAF=7241;SAP=15726.6;SAR=0;SRF=2673;SRP=5807.36;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:15,23:15:540:23:828:-63.405,0,-37.4974	1/1:134:1,133:1:36:133:4772:-426.005,-36.7397,0	1/1:151:0,151:0:0:151:5413:-487.183,-45.4555,0	0/1:206:103,103:103:3668:103:3685:-269.818,0,-268.313	0/1:102:46,56:46:1643:56:2000:-149.561,0,-117.453	0/1:53:34,19:34:1216:19:684:-45.9357,0,-93.792	0/1:182:85,97:85:3032:97:3480:-258.621,0,-218.324	1/1:128:0,128:0:0:128:4573:-411.631,-38.5318,0	0/1:96:41,55:41:1444:55:1980:-149.556,0,-101.354	0/1:103:36,67:36:1292:67:2400:-185.248,0,-85.5777	1/1:40:0,40:0:0:40:1432:-129.155,-12.0412,0	0/1:53:28,25:28:1004:25:900:-65.366,0,-74.7213	1/1:48:0,48:0:0:48:1728:-155.797,-14.4494,0	1/1:58:0,58:0:0:58:2088:-188.176,-17.4597,0	1/1:47:0,47:0:0:47:1692:-152.559,-14.1484,0	0/1:51:31,20:31:1112:20:720:-49.767,0,-85.0388	1/1:48:0,48:0:0:48:1728:-155.796,-14.4494,0	1/1:27:0,27:0:0:27:972:-87.7946,-8.12781,0	0/1:28:18,10:18:648:10:356:-23.9524,0,-50.223	0/1:260:148,112:148:5319:112:4028:-284.428,0,-400.573	0/1:161:94,67:94:3352:67:2412:-168.863,0,-253.432	1/1:208:0,208:0:0:208:7469:-672.153,-62.6142,0	0/1:52:26,26:26:936:26:932:-68.5444,0,-68.9059	1/1:143:6,137:6:216:137:4909:-422.15,-23.2568,0	0/1:85:45,40:45:1612:40:1432:-103.585,0,-119.783	1/1:323:0,323:0:0:323:11592:-1043.02,-97.2327,0	0/1:256:154,102:154:5532:102:3672:-253.609,0,-420.939	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	1/1:478:0,478:0:0:478:17143:-1542.49,-143.892,0	0/1:127:67,60:67:2388:60:2148:-155.353,0,-176.947	1/1:130:0,130:0:0:130:4672:-420.632,-39.1339,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:15:0,15:0:0:15:540:-48.9283,-4.51545,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	1/1:165:0,165:0:0:165:5924:-533.254,-49.67,0	0/1:270:155,115:155:5544:115:4113:-289.066,0,-417.807	0/1:46:25,21:25:896:21:756:-54.5165,0,-67.113	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:130:0,130:0:0:130:4657:-419.271,-39.1339,0	1/1:32:0,32:0:0:32:1148:-103.601,-9.63296,0	0/1:196:98,97:98:3524:97:3484:-254.624,0,-258.307	0/1:35:20,15:20:720:15:540:-38.4005,0,-54.5927	1/1:38:0,38:0:0:38:1359:-122.607,-11.4391,0	0/1:111:47,64:47:1670:64:2296:-173.483,0,-117.172	1/1:132:0,132:0:0:132:4736:-426.381,-39.736,0	1/1:172:0,172:0:0:172:6182:-556.411,-51.7772,0	0/1:161:66,95:66:2368:95:3412:-258.724,0,-164.912	0/1:170:81,89:81:2900:89:3170:-234.338,0,-210.061	0/1:237:111,126:111:3975:126:4524:-335.976,0,-286.596	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:230:117,113:117:4191:113:4040:-294.522,0,-308.134	0/1:20:4,16:4:144:16:572:-45.7928,0,-7.29302	1/1:13:0,13:0:0:13:464:-42.0893,-3.91339,0	1/1:175:0,175:0:0:175:6288:-565.988,-52.6803,0	0/1:57:33,24:33:1163:24:864:-60.9062,0,-87.8174	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:20:10,10:10:360:10:356:-26.3606,0,-26.7237	0/1:95:44,51:44:1565:51:1819:-135.351,0,-112.542	1/1:133:0,132:0:0:132:4748:-427.101,-39.736,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:208:124,84:124:4440:84:2998:-207.433,0,-337.157	1/1:250:3,247:3:108:247:8857:-786.982,-65.1823,0	0/1:81:33,48:33:1188:48:1720:-130.693,0,-82.8452	1/1:125:0,125:0:0:125:4482:-403.538,-37.6288,0	0/1:181:84,97:84:2993:97:3484:-259.272,0,-215.115	1/1:95:1,94:1:36:94:3384:-301.159,-24.9996,0	0/1:9:6,3:6:216:3:108:-7.36114,0,-17.0812	0/1:92:43,49:43:1536:49:1748:-129.893,0,-110.838	1/1:44:0,44:0:0:44:1580:-142.49,-13.2453,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:210:0,210:0:0:210:7552:-679.526,-63.2163,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:157:0,157:0:0:157:5632:-506.96,-47.2617,0	1/1:195:0,195:0:0:195:7008:-630.763,-58.7009,0	0/1:130:61,69:61:2184:69:2484:-184.659,0,-157.691	0/1:104:66,38:66:2372:38:1364:-91.7454,0,-182.431	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:167:103,64:103:3684:64:2300:-156.98,0,-281.491	0/1:125:57,68:57:2036:68:2425:-180.837,0,-145.875	1/1:261:0,261:0:0:261:9362:-842.524,-78.5688,0	1/1:102:0,102:0:0:102:3656:-329.238,-30.7051,0	1/1:41:0,41:0:0:41:1476:-133.131,-12.3422,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:124:73,51:73:2624:51:1821:-126.835,0,-199.079	0/1:45:23,22:23:824:22:792:-57.9202,0,-60.937	0/1:71:42,29:42:1499:29:1036:-72.1737,0,-113.831	0/1:60:35,25:35:1252:25:896:-62.8818,0,-94.8672	0/1:28:8,20:8:284:20:720:-56.5698,0,-17.4745	0/1:68:46,22:46:1652:22:792:-51.1356,0,-128.498	0/1:53:33,20:33:1188:20:720:-49.1718,0,-91.274	1/1:142:0,141:0:0:141:5058:-454.976,-42.4452,0	1/1:71:0,71:0:0:71:2539:-228.756,-21.3731,0
chr10	12844209	.	G	A	68500.8	PASS	AB=0.503678;ABP=3.28185;AC=133;AF=0.707447;AN=188;AO=3291;CIGAR=1X;DP=4446;DPB=4446;DPRA=24.3956;EPP=7149.33;EPPR=2506.72;GTI=1;LEN=1;MEANALT=1.02198;MQM=59.6354;MQMR=59.9011;NS=94;NUMALT=1;ODDS=1.47884;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117634;QR=41311;RO=1153;RPL=3291;RPP=7149.33;RPPR=2506.72;RPR=0;RUN=1;SAF=0;SAP=7149.33;SAR=3291;SRF=0;SRP=2506.72;SRR=1153;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:11,11:11:392:11:396:-29.3519,0,-28.9974	1/1:30:0,30:0:0:30:1072:-96.781,-9.0309,0	1/1:100:0,100:0:0:100:3581:-322.312,-30.103,0	0/1:87:47,40:47:1688:40:1432:-102.983,0,-126.017	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:71:36,35:36:1280:35:1252:-91.5994,0,-94.1301	1/1:54:0,54:0:0:54:1925:-173.517,-16.2556,0	0/1:46:32,14:32:1148:14:500:-31.4888,0,-89.7825	0/1:60:30,30:30:1080:30:1076:-79.0887,0,-79.4515	1/1:37:0,37:0:0:37:1320:-119.095,-11.1381,0	0/1:80:49,31:49:1747:31:1112:-76.3089,0,-133.431	1/1:55:0,55:0:0:55:1976:-178.082,-16.5567,0	1/1:60:0,60:0:0:60:2145:-193.306,-18.0618,0	1/1:52:0,52:0:0:52:1867:-168.212,-15.6536,0	0/1:46:23,23:23:824:23:824:-60.6313,0,-60.6359	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:23:0,23:0:0:23:828:-74.8409,-6.92369,0	0/1:16:12,4:12:419:4:144:-8.49714,0,-33.218	0/1:42:22,20:22:792:20:715:-52.0333,0,-58.9624	0/1:118:55,63:55:1972:63:2252:-167.411,0,-142.233	1/1:35:0,35:0:0:35:1229:-110.911,-10.5361,0	0/1:45:14,31:14:504:31:1101:-85.8403,0,-32.1517	0/1:34:7,27:7:252:27:957:-76.2088,0,-12.7939	0/1:33:21,12:21:756:12:432:-29.2872,0,-58.4332	1/1:119:0,119:0:0:119:4270:-384.457,-35.8226,0	0/1:106:51,55:51:1820:55:1957:-144.49,0,-132.115	0/1:21:3,18:3:108:18:648:-52.3256,0,-3.75354	1/1:84:0,84:0:0:84:3001:-270.308,-25.2865,0	0/1:68:25,43:25:900:43:1540:-118.284,0,-60.851	1/1:65:0,65:0:0:65:2325:-209.479,-19.567,0	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:18:0,18:0:0:18:644:-58.2651,-5.41854,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:134:0,134:0:0:134:4788:-431.063,-40.338,0	0/1:53:28,25:28:1000:25:892:-64.6275,0,-74.3608	0/1:39:20,19:20:720:19:680:-49.7808,0,-53.3886	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:55:0,55:0:0:55:1976:-178.109,-16.5567,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:46:21,25:21:756:25:896:-67.113,0,-54.5198	0/1:36:16,20:16:576:20:716:-53.9283,0,-41.3379	1/1:32:0,32:0:0:32:1148:-103.625,-9.63296,0	0/1:48:29,19:29:1044:19:669:-46.0845,0,-79.8254	1/1:26:0,26:0:0:26:921:-83.2052,-7.82678,0	1/1:42:0,42:0:0:42:1508:-135.978,-12.6433,0	0/1:55:27,28:27:968:28:1008:-74.4774,0,-70.8807	0/1:50:20,30:20:716:30:1072:-81.741,0,-49.7162	0/1:55:26,29:26:936:29:1044:-77.7172,0,-68.0028	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:39:17,22:17:608:22:788:-59.4964,0,-43.3119	0/1:35:11,24:11:396:24:849:-66.19,0,-23.984	1/1:5:0,5:0:0:5:176:-16.0878,-1.50515,0	1/1:57:0,57:0:0:57:2034:-183.322,-17.1587,0	0/1:22:11,11:11:396:11:381:-27.998,0,-29.3601	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/1:49:31,18:31:1112:18:640:-43.1788,0,-85.6409	1/1:71:0,71:0:0:71:2552:-229.883,-21.3731,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:104:51,52:51:1820:52:1868:-137.177,0,-132.492	1/1:78:0,77:0:0:77:2756:-248.061,-23.1793,0	0/1:49:20,29:20:720:29:1040:-79.1593,0,-50.3783	1/1:23:0,23:0:0:23:824:-74.481,-6.92369,0	0/1:52:23,29:23:828:29:1021:-76.5444,0,-59.1906	1/1:75:0,75:0:0:75:2673:-240.775,-22.5773,0	0/1:31:14,17:14:491:17:612:-45.9095,0,-35.189	0/1:28:15,13:15:540:13:468:-34.0062,0,-40.5077	1/1:26:0,26:0:0:26:936:-84.5209,-7.82678,0	1/1:19:0,19:0:0:19:684:-61.888,-5.71957,0	1/1:123:0,123:0:0:123:4379:-394.189,-37.0267,0	1/1:80:0,80:0:0:80:2864:-257.989,-24.0824,0	1/1:97:0,97:0:0:97:3469:-312.394,-29.1999,0	1/1:98:0,98:0:0:98:3489:-314.164,-29.5009,0	0/1:31:13,18:13:468:18:644:-48.9449,0,-33.1277	0/1:66:27,39:27:968:39:1392:-105.695,0,-67.5694	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:45:29,16:29:1044:16:576:-38.624,0,-80.7	0/1:26:10,16:10:352:16:564:-43.2307,0,-24.1914	1/1:74:0,74:0:0:74:2650:-238.733,-22.2762,0	1/1:40:1,39:1:36:39:1392:-121.976,-8.44552,0	1/1:46:0,46:0:0:46:1648:-148.604,-13.8474,0	1/1:35:0,35:0:0:35:1256:-113.326,-10.5361,0	0/1:78:40,38:40:1432:38:1360:-99.2203,0,-105.697	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:65:30,35:30:1076:35:1248:-93.0498,0,-77.5859	0/1:36:19,17:19:684:17:608:-44.1986,0,-51.0532	0/1:51:22,29:22:783:29:1044:-78.9131,0,-55.4404	0/1:111:67,44:67:2404:44:1576:-108.68,0,-183.202	0/1:55:36,19:36:1283:19:665:-43.5979,0,-99.216	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:82:0,82:0:0:82:2909:-262.031,-24.6845,0
chr10	13033281	.	C	T	143261	PASS	AB=0.481145;ABP=14.2287;AC=135;AF=0.725806;AN=186;AO=5326;CIGAR=1X;DP=7225;DPB=7225;DPRA=0;EPP=3.05107;EPPR=3.90726;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.9807;MQMR=59.9995;NS=93;NUMALT=1;ODDS=0.305138;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190207;QR=67586;RO=1898;RPL=5326;RPP=11568.3;RPPR=4115.78;RPR=0;RUN=1;SAF=2668;SAP=3.05107;SAR=2658;SRF=934;SRP=4.03998;SRR=964;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:29,26:29:1027:26:932:-67.6422,0,-76.1855	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:109:1,107:1:36:107:3795:-338.168,-29.1979,0	0/1:121:61,60:61:2165:60:2152:-157.523,0,-158.691	0/1:24:12,12:12:424:12:428:-31.6341,0,-31.2717	0/1:30:13,17:13:464:17:608:-46.0211,0,-33.0666	0/1:45:13,32:13:464:32:1129:-88.37,0,-28.5512	1/1:103:0,103:0:0:103:3696:-332.842,-31.0061,0	0/1:95:46,49:46:1648:49:1742:-128.466,0,-120.011	0/1:65:37,28:37:1313:28:999:-70.6576,0,-98.9027	1/1:96:0,96:0:0:96:3439:-309.723,-28.8989,0	0/1:198:103,95:103:3655:95:3412:-247.689,0,-269.547	1/1:151:0,151:0:0:151:5407:-486.759,-45.4555,0	1/1:132:0,132:0:0:132:4724:-425.283,-39.736,0	1/1:125:0,125:0:0:125:4475:-402.917,-37.6288,0	0/1:121:66,55:66:2352:55:1972:-141.33,0,-175.515	1/1:59:1,58:1:36:58:2080:-183.872,-14.1625,0	1/1:60:0,60:0:0:60:2143:-193.137,-18.0618,0	0/1:68:42,26:42:1500:26:915:-62.1955,0,-114.825	0/1:69:36,33:36:1274:33:1180:-85.737,0,-94.1904	0/1:139:72,67:72:2576:67:2408:-175.133,0,-190.246	1/1:25:0,25:0:0:25:891:-80.5094,-7.52575,0	0/1:77:41,36:41:1464:36:1292:-93.4045,0,-108.877	1/1:52:3,49:3:108:49:1756:-148.249,-5.57839,0	0/1:57:36,21:36:1292:21:756:-51.2085,0,-99.4251	1/1:146:0,146:0:0:146:5198:-467.959,-43.9504,0	0/1:121:59,62:59:2104:62:2201:-161.929,0,-153.205	0/1:51:25,26:25:896:26:928:-68.4857,0,-65.6078	1/1:98:0,98:0:0:98:3438:-309.633,-29.5009,0	0/1:60:27,33:27:957:33:1180:-88.4462,0,-68.3821	1/1:82:0,82:0:0:82:2935:-264.384,-24.6845,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	1/1:336:0,336:0:0:336:11999:-1079.71,-101.146,0	0/1:40:18,22:18:644:22:792:-59.5645,0,-46.2494	0/1:83:45,38:45:1620:38:1356:-97.355,0,-121.104	.:.:.:.:.:.:.:.	1/1:78:1,77:1:36:77:2744:-243.605,-19.8821,0	1/1:44:0,44:0:0:44:1579:-142.402,-13.2453,0	0/1:124:63,61:63:2252:61:2172:-158.419,0,-165.615	0/1:112:55,57:55:1972:57:2052:-151.236,0,-144.039	1/1:103:0,103:0:0:103:3679:-331.313,-31.0061,0	0/1:55:27,28:27:930:28:989:-72.7654,0,-67.4515	1/1:66:1,65:1:36:65:2294:-203.123,-16.2697,0	1/1:115:1,114:1:36:114:4088:-364.507,-31.0202,0	0/1:46:30,16:30:1076:16:576:-38.3276,0,-83.3055	0/1:63:25,38:25:891:38:1355:-103.285,0,-61.5435	0/1:76:47,29:47:1661:29:1029:-70.0429,0,-126.897	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:72:27,45:27:959:45:1620:-124.416,0,-64.9512	0/1:32:21,11:21:729:11:396:-26.3498,0,-56.2957	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	0/1:41:18,23:18:648:23:779:-58.0786,0,-46.3097	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:44:21,23:21:748:23:805:-59.5222,0,-54.4	1/1:134:3,131:3:104:131:4696:-413.097,-30.6352,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:47:21,26:21:756:26:936:-70.4111,0,-54.2188	1/1:75:1,74:1:36:74:2625:-232.899,-18.979,0	0/1:48:21,27:21:752:27:972:-73.3485,0,-53.5568	1/1:69:0,69:0:0:69:2431:-219.033,-20.7711,0	0/1:93:50,43:50:1788:43:1535:-110.447,0,-133.207	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:66:35,31:35:1252:31:1112:-80.5234,0,-93.1171	0/1:38:25,13:25:881:13:468:-31.0205,0,-68.1667	1/1:93:0,93:0:0:93:3316:-298.657,-27.9958,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:44:0,44:0:0:44:1572:-141.772,-13.2453,0	1/1:116:0,116:0:0:116:4137:-372.513,-34.9195,0	1/1:95:0,95:0:0:95:3419:-307.923,-28.5979,0	0/1:91:45,46:45:1584:46:1636:-120.133,0,-115.454	0/1:61:38,23:38:1364:23:824:-56.1205,0,-104.698	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:68:37,31:37:1324:31:1116:-80.2817,0,-98.9921	0/1:80:42,38:42:1480:38:1347:-97.4471,0,-109.409	1/1:119:0,119:0:0:119:4229:-380.789,-35.8226,0	1/1:86:0,86:0:0:86:3065:-276.064,-25.8886,0	1/1:123:0,123:0:0:123:4403:-396.442,-37.0267,0	1/1:111:1,110:1:36:110:3956:-352.631,-29.8161,0	0/1:216:114,102:114:4075:102:3626:-261.521,0,-301.914	0/1:37:25,12:25:900:12:432:-28.0815,0,-70.1829	0/1:118:57,61:57:2001:61:2187:-161.573,0,-144.838	0/1:129:68,61:68:2431:61:2160:-155.832,0,-180.212	0/1:47:28,19:28:1008:19:684:-47.7419,0,-76.8879	0/1:141:55,86:55:1943:86:3076:-234.623,0,-132.7	0/1:126:89,37:89:3158:37:1328:-81.8925,0,-246.516	1/1:56:0,56:0:0:56:2010:-181.173,-16.8577,0	1/1:229:0,229:0:0:229:8174:-735.668,-68.9359,0
chr10	13229788	.	CTTAA	GTTAA,GTTAC	167074	PASS	AB=0.556926,0.440243;ABP=142.199,156.388;AC=136,52;AF=0.723404,0.276596;AN=188;AO=7960,2186;CIGAR=1X4M,1X3M1X;DP=10164;DPB=10164;DPRA=0,0.929648;EPP=17287.9,4749.85;EPPR=0;GTI=7;LEN=1,5;MEANALT=1.76596,2.21053;MQM=35.166,27.6953;MQMR=0;NS=94;NUMALT=2;ODDS=1.63264;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=266429,77660;QR=0;RO=0;RPL=7960,2186;RPP=17287.9,4749.85;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=17287.9,4749.85;SAR=7960,2186;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,13,11:0:0:13,11:439,384:-57.9684,-25.8836,-21.9702,-32.384,0,-29.0726	1/1:140:0,138,1:0:0:138,1:4610,35:-379.268,-41.5421,0,-376.976,-39.2664,-376.675	1/1:178:0,178,0:0:0:178,0:6009,0:-494.144,-53.5833,0,-494.144,-53.5833,-494.144	1/2:204:0,102,101:0:0:102,101:3296,3600:-446.204,-207.71,-177.005,-238.514,0,-208.109	1/2:91:0,43,47:0:0:43,47:1510,1680:-212.079,-98.6605,-85.7162,-113.552,0,-99.4039	1/2:75:0,36,39:0:0:36,39:1211,1375:-177.84,-89.3156,-78.4785,-88.8221,0,-77.0819	1/2:150:0,81,69:0:0:81,69:2592,2447:-330.406,-142.761,-118.377,-187.921,0,-167.15	1/1:169:0,168,1:0:0:168,1:5635,36:-463.001,-50.573,0,-460.69,-47.9713,-460.389	1/2:114:0,78,34:0:0:78,34:2487,1198:-256.706,-76.3393,-52.859,-180.475,0,-170.24	1/2:85:0,55,30:0:0:55,30:1737,1072:-187.815,-62.6489,-46.0923,-125.438,0,-116.407	1/1:61:0,61,0:0:0:61,0:1971,0:-162.861,-18.3628,0,-162.861,-18.3628,-162.861	1/2:53:0,32,21:0:0:32,21:1069,753:-127.07,-48.7712,-39.1382,-78.5949,0,-72.2733	1/1:71:0,71,0:0:0:71,0:2385,0:-196.216,-21.3731,0,-196.216,-21.3731,-196.216	1/1:79:0,79,0:0:0:79,0:2766,0:-232.892,-23.7814,0,-232.892,-23.7814,-232.892	1/1:68:0,68,0:0:0:68,0:2134,0:-174.261,-20.47,0,-174.261,-20.47,-174.261	1/2:46:0,23,23:0:0:23,23:815,824:-110.166,-48.1224,-41.1987,-62.3428,0,-55.4191	1/1:58:0,58,0:0:0:58,0:1923,0:-158.155,-17.4597,0,-158.155,-17.4597,-158.155	1/1:56:0,56,0:0:0:56,0:1890,0:-155.466,-16.8577,0,-155.466,-16.8577,-155.466	1/2:33:0,26,7:0:0:26,7:885,249:-80.8028,-15.9997,-8.17292,-65.0918,0,-62.9846	1/2:213:0,110,103:0:0:110,103:3524,3677:-466.588,-211.846,-178.732,-255.018,0,-224.012	1/2:107:0,66,41:0:0:66,41:2318,1432:-259.769,-84.5832,-64.7152,-175.473,0,-163.131	1/1:150:0,150,0:0:0:150,0:5062,0:-432.576,-45.1545,0,-432.576,-45.1545,-432.576	1/2:119:0,66,53:0:0:66,53:2104,1871:-260.858,-108.952,-89.0837,-152.18,0,-136.226	1/1:50:0,50,0:0:0:50,0:1753,0:-147.406,-15.0515,0,-147.406,-15.0515,-147.406	1/2:147:0,93,54:0:0:93,54:3270,1924:-358.241,-112.385,-84.3896,-246.143,0,-229.887	1/1:405:0,405,0:0:0:405,0:14009,0:-1205.54,-121.917,0,-1205.54,-121.917,-1205.54	1/2:289:0,159,128:0:0:159,128:5581,4541:-686.61,-264.935,-217.071,-421.754,0,-383.222	1/2:19:0,14,5:0:0:14,5:500,180:-49.3424,-11.5342,-7.31974,-38.1048,0,-36.5997	1/1:385:0,384,0:0:0:384,0:13326,0:-1145.78,-115.596,0,-1145.78,-115.596,-1145.78	1/2:149:0,72,77:0:0:72,77:2546,2740:-353.326,-160.658,-138.984,-192.967,0,-169.788	1/1:125:0,125,0:0:0:125,0:3981,0:-325.615,-37.6288,0,-325.615,-37.6288,-325.615	1/1:8:0,8,0:0:0:8,0:281,0:-23.7453,-2.40824,0,-23.7453,-2.40824,-23.7453	1/2:25:0,17,8:0:0:17,8:600,286:-62.5975,-17.0438,-11.9263,-45.8408,0,-43.4325	1/1:5:0,5,0:0:0:5,0:170,0:-14.3703,-1.50515,0,-14.3703,-1.50515,-14.3703	1/1:14:0,14,0:0:0:14,0:477,0:-39.5618,-4.21442,0,-39.5618,-4.21442,-39.5618	1/2:24:0,12,11:0:0:12,11:377,389:-52.4238,-25.2768,-21.6644,-27.1578,0,-23.8465	1/1:206:0,206,0:0:0:206,0:7037,0:-604.977,-62.0122,0,-604.977,-62.0122,-604.977	1/2:234:0,124,110:0:0:124,110:4356,3886:-558.03,-229.154,-191.826,-329.171,0,-296.057	1/2:68:0,46,22:0:0:46,22:1544,790:-164.672,-51.1026,-37.2552,-113.866,0,-107.243	1/2:9:0,5,4:0:0:5,4:167,143:-21.0282,-8.58425,-7.0791,-12.7284,0,-11.5243	1/1:146:0,145,1:0:0:145,1:5091,36:-426.092,-43.6494,0,-424.01,-41.3018,-423.709	1/1:37:0,37,0:0:0:37,0:1304,0:-110.154,-11.1381,0,-110.154,-11.1381,-110.154	1/2:75:0,38,37:0:0:38,37:1345,1309:-174.75,-73.4132,-61.974,-101.628,0,-90.4901	1/2:82:0,55,27:0:0:55,27:1787,964:-182.162,-52.2114,-35.6547,-130.214,0,-122.086	1/1:64:0,64,0:0:0:64,0:2059,0:-168.722,-19.2659,0,-168.722,-19.2659,-168.722	1/2:113:0,63,50:0:0:63,50:2167,1783:-271.451,-104.228,-85.2633,-167.516,0,-152.464	1/1:248:0,248,0:0:0:248,0:8452,0:-694.762,-74.6554,0,-694.762,-74.6554,-694.762	1/1:215:0,213,2:0:0:213,2:6843,72:-560.169,-64.1194,0,-556.004,-59.6891,-555.402	1/2:136:0,72,64:0:0:72,64:2280,2280:-297.161,-133.117,-111.443,-164.319,0,-145.053	1/2:166:0,103,63:0:0:103,63:3335,2244:-372.748,-130.442,-99.4361,-242.581,0,-223.616	1/2:99:0,63,36:0:0:63,36:2164,1281:-242.434,-75.7337,-56.7688,-166.989,0,-156.152	1/2:10:0,6,4:0:0:6,4:186,126:-21.3272,-7.95555,-6.14937,-13.6325,0,-12.4284	1/2:187:0,93,94:0:0:93,94:3074,3336:-437.584,-213.984,-185.988,-223.893,0,-195.597	1/2:70:0,36,34:0:0:36,34:1228,1214:-164.273,-69.8301,-58.993,-94.7346,0,-84.4995	1/1:24:0,24,0:0:0:24,0:783,0:-64.594,-7.22472,0,-64.594,-7.22472,-64.594	1/1:202:0,202,0:0:0:202,0:7104,0:-599.222,-60.8081,0,-599.222,-60.8081,-599.222	1/2:63:0,35,28:0:0:35,28:1132,994:-137.651,-55.51,-44.974,-82.4123,0,-73.9834	1/1:5:0,5,0:0:0:5,0:180,0:-16.0112,-1.50515,0,-16.0112,-1.50515,-16.0112	1/2:22:0,16,6:0:0:16,6:537,204:-53.3901,-12.5324,-7.71594,-41.1337,0,-39.3275	1/2:111:0,57,53:0:0:57,53:2020,1898:-261.251,-107.619,-90.4599,-153.661,0,-137.706	1/1:87:0,87,0:0:0:87,0:2800,0:-229.567,-26.1896,0,-229.567,-26.1896,-229.567	1/2:15:0,6,9:0:0:6,9:196,311:-33.0149,-18.7922,-16.986,-14.5055,0,-11.7962	1/2:218:0,124,94:0:0:124,94:4306,3334:-528.818,-194.856,-157.529,-334.255,0,-305.959	1/1:221:0,221,0:0:0:221,0:7082,0:-579.375,-66.5276,0,-579.375,-66.5276,-579.375	1/2:80:0,49,28:0:0:49,28:1689,1006:-185.011,-57.8048,-43.0543,-127.317,0,-118.888	1/1:129:0,129,0:0:0:129,0:4117,0:-336.709,-38.8329,0,-336.709,-38.8329,-336.709	1/2:168:0,90,78:0:0:90,78:2865,2774:-368.821,-161.689,-134.597,-207.407,0,-183.927	1/1:91:0,91,0:0:0:91,0:2935,0:-240.509,-27.3937,0,-240.509,-27.3937,-240.509	1/2:20:0,15,5:0:0:15,5:492,179:-47.3461,-10.5037,-5.98828,-37.1147,0,-35.6095	1/2:51:0,32,19:0:0:32,19:1065,682:-121.334,-43.7736,-34.1406,-77.8539,0,-72.1344	1/1:73:0,73,0:0:0:73,0:2515,0:-216.158,-21.9752,0,-216.158,-21.9752,-216.158	1/1:24:0,24,0:0:0:24,0:765,0:-62.7252,-7.22472,0,-62.7252,-7.22472,-62.7252	1/1:132:0,131,0:0:0:131,0:4335,0:-356.192,-39.4349,0,-356.192,-39.4349,-356.192	1/1:57:0,56,0:0:0:56,0:1850,0:-151.806,-16.8577,0,-151.806,-16.8577,-151.806	1/1:237:0,237,0:0:0:237,0:8314,0:-699.465,-71.3441,0,-699.465,-71.3441,-699.465	1/1:176:0,176,0:0:0:176,0:5675,0:-464.436,-52.9813,0,-464.436,-52.9813,-464.436	1/2:173:0,94,78:0:0:94,78:3202,2761:-413.385,-178.635,-150.338,-234.868,0,-211.387	1/2:95:0,58,36:0:0:58,36:1932,1271:-222.899,-81.9618,-64.5021,-140.93,0,-130.093	1/2:12:0,6,6:0:0:6,6:207,215:-29.3501,-14.1389,-12.3327,-15.5136,0,-13.7074	1/2:134:0,61,73:0:0:61,73:2123,2589:-311.64,-151.642,-133.279,-160.294,0,-138.319	1/2:113:0,55,58:0:0:55,58:1821,2061:-266.279,-133.609,-117.052,-132.966,0,-115.506	1/1:370:0,366,4:0:0:366,4:11808,142:-965.319,-110.177,0,-957.011,-101.604,-955.806	1/1:128:0,128,0:0:0:128,0:4090,0:-334.247,-38.5318,0,-334.247,-38.5318,-334.247	1/1:49:0,49,0:0:0:49,0:1557,0:-127.446,-14.7505,0,-127.446,-14.7505,-127.446	1/1:57:0,57,0:0:0:57,0:1828,0:-149.855,-17.1587,0,-149.855,-17.1587,-149.855	1/2:107:0,64,43:0:0:64,43:2047,1526:-237.076,-89.4256,-70.1597,-147.924,0,-134.98	1/2:36:0,19,17:0:0:19,17:651,607:-86.1784,-38.4383,-32.7187,-48.037,0,-42.9194	1/2:63:0,36,27:0:0:36,27:1212,971:-151.295,-62.6798,-51.8427,-88.9122,0,-80.7844	1/2:66:0,37,29:0:0:37,29:1232,1034:-156.592,-66.6375,-55.4994,-90.2495,0,-81.5197	1/2:28:0,21,7:0:0:21,7:748,251:-71.6316,-15.0561,-8.73447,-56.8598,0,-54.7526	1/2:91:0,51,40:0:0:51,40:1782,1415:-217.387,-83.6196,-68.2671,-134.059,0,-122.017	1/2:63:0,26,36:0:0:26,36:825,1278:-134.911,-75.2109,-67.3842,-59.8133,0,-48.9763	1/1:122:0,122,0:0:0:122,0:3853,0:-314.543,-36.7257,0,-314.543,-36.7257,-314.543	1/1:97:0,97,0:0:0:97,0:3092,0:-253.176,-29.1999,0,-253.176,-29.1999,-253.176
chr10	13288465	.	A	G	186991	PASS	AB=0.684063;ABP=944.672;AC=143;AF=0.760638;AN=188;AO=7110;CIGAR=1X;DP=8151;DPB=8151;DPRA=0;EPP=3397.82;EPPR=37.2193;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9958;MQMR=60;NS=94;NUMALT=1;ODDS=0.327349;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253140;QR=37186;RO=1040;RPL=0;RPP=15442.2;RPPR=2261.34;RPR=7110;RUN=1;SAF=5222;SAP=3397.82;SAR=1888;SRF=584;SRP=37.2193;SRR=456;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:11,8:11:396:8:284:-20.1838,0,-30.2632	1/1:38:1,37:1:36:37:1324:-115.864,-7.84087,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:56:27,29:27:972:29:1027:-75.8845,0,-70.9402	0/1:15:9,6:9:316:6:212:-14.9093,0,-24.2634	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	0/1:38:19,19:19:684:19:675:-49.6378,0,-50.4512	1/1:35:0,35:0:0:35:1237:-111.632,-10.5361,0	0/1:28:18,10:18:648:10:356:-23.9524,0,-50.223	0/1:31:14,17:14:504:17:608:-45.7201,0,-36.3662	1/1:412:0,412:0:0:412:14740:-1326.34,-124.024,0	0/1:95:47,48:47:1688:48:1687:-123.516,0,-123.609	1/1:102:0,102:0:0:102:3660:-329.603,-30.7051,0	1/1:117:0,117:0:0:117:4154:-374.047,-35.2205,0	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	0/1:84:45,39:45:1599:39:1364:-97.7691,0,-118.913	1/1:97:1,96:1:36:96:3407:-303.245,-25.6016,0	1/1:62:1,61:1:36:61:2144:-189.628,-15.0656,0	0/1:124:24,100:24:852:100:3571:-284.27,0,-39.6727	0/1:47:25,22:25:900:22:788:-57.0964,0,-67.1726	0/1:48:22,26:22:779:26:932:-69.7494,0,-55.9826	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:30:2,28:2:68:28:995:-83.4063,-2.57319,0	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	0/1:65:24,41:24:864:41:1446:-110.867,0,-58.5156	0/1:41:20,21:20:720:21:737:-54.3084,0,-52.7865	1/1:62:0,62:0:0:62:2207:-198.895,-18.6639,0	0/1:31:13,18:13:468:18:640:-48.5974,0,-33.1277	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:184:0,184:0:0:184:6567:-591.11,-55.3895,0	1/1:121:7,114:7:252:114:4045:-341.208,-13.3957,0	1/1:286:0,286:0:0:286:10195:-917.481,-86.0946,0	1/1:376:0,376:0:0:376:13364:-1202.55,-113.187,0	1/1:156:3,153:3:108:153:5433:-479.026,-36.8855,0	1/1:176:0,176:0:0:176:6269:-564.306,-52.9813,0	0/1:26:15,11:15:540:11:392:-27.7933,0,-41.1098	0/1:182:30,152:30:1080:152:5430:-434.041,0,-42.7258	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:38:1,37:1:36:37:1323:-115.773,-7.84087,0	1/1:207:1,206:1:36:206:7360:-658.851,-58.7149,0	0/1:59:23,36:23:811:36:1288:-98.4628,0,-55.5492	0/1:81:35,46:35:1256:46:1604:-120.262,0,-88.9619	1/1:71:0,71:0:0:71:2508:-225.971,-21.3731,0	0/1:31:12,19:12:428:19:676:-51.8361,0,-29.5269	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:49:1,48:1:36:48:1693:-149.056,-11.1522,0	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	0/1:46:23,23:23:828:23:828:-60.9967,0,-60.9967	0/1:37:16,21:16:568:21:748:-56.5072,0,-40.3138	1/1:130:0,130:0:0:130:4656:-419.201,-39.1339,0	0/1:38:18,20:18:644:20:720:-53.6896,0,-46.8515	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	1/1:98:0,98:0:0:98:3488:-314.13,-29.5009,0	1/1:36:0,36:0:0:36:1264:-114.06,-10.8371,0	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	1/1:248:1,247:1:36:247:8818:-790.006,-71.0572,0	1/1:90:2,88:2:68:88:3120:-274.569,-20.635,0	0/1:27:11,16:11:392:16:576:-44.0472,0,-27.4922	1/1:116:2,114:2:72:114:4043:-357.224,-28.0828,0	1/1:78:2,76:2:72:76:2709:-237.216,-16.6436,0	0/1:31:11,20:11:396:20:698:-53.8095,0,-26.6508	1/1:47:0,47:0:0:47:1676:-151.125,-14.1484,0	0/1:21:11,10:11:392:10:352:-25.6966,0,-29.2984	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:50:22,28:22:769:28:1000:-75.2639,0,-54.4771	1/1:32:0,32:0:0:32:1125:-101.556,-9.63296,0	0/1:347:46,301:46:1656:301:10783:-865.914,0,-44.871	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	1/1:109:0,109:0:0:109:3895:-350.744,-32.8123,0	1/1:193:0,193:0:0:193:6870:-618.37,-58.0988,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:27:0,27:0:0:27:947:-85.5438,-8.12781,0	1/1:38:0,38:0:0:38:1346:-121.439,-11.4391,0	1/1:44:0,44:0:0:44:1550:-139.789,-13.2453,0	0/1:37:20,17:20:705:17:604:-43.5525,0,-52.6347	0/1:32:9,23:9:324:23:805:-63.1345,0,-19.8729	1/1:107:1,106:1:36:106:3804:-338.959,-28.6119,0	0/1:51:23,28:23:824:28:994:-74.4219,0,-59.1308	0/1:25:13,12:13:459:12:419:-30.5169,0,-34.1183	1/1:72:0,72:0:0:72:2526:-227.591,-21.6742,0	1/1:117:0,117:0:0:117:4151:-373.776,-35.2205,0	1/1:110:0,110:0:0:110:3900:-351.195,-33.1133,0	1/1:90:0,89:0:0:89:3157:-283.995,-26.7917,0	0/1:111:56,55:56:2008:55:1941:-141.55,0,-147.579	0/1:41:21,20:21:752:20:696:-50.6174,0,-55.664	0/1:66:28,38:28:1000:38:1352:-102.112,0,-70.4474	0/1:67:33,34:33:1180:34:1207:-88.7663,0,-86.339	0/1:313:40,273:40:1428:273:9762:-784.305,0,-34.5951	0/1:525:50,475:50:1787:475:16915:-1363.96,0,-3.07115	0/1:116:62,54:62:2205:54:1924:-138.517,0,-163.794	1/1:99:0,99:0:0:99:3510:-316.11,-29.802,0	1/1:134:3,131:3:108:131:4655:-409.024,-30.2629,0
chr10	13288501	.	A	C	185742	PASS	AB=0.678076;ABP=896.257;AC=143;AF=0.760638;AN=188;AO=7076;CIGAR=1X;DP=8151;DPB=8151;DPRA=0;EPP=3236.44;EPPR=32.6399;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9869;MQMR=60;NS=94;NUMALT=1;ODDS=1.30752;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=250363;QR=38371;RO=1073;RPL=7044;RPP=15091.7;RPPR=2238.43;RPR=32;RUN=1;SAF=5131;SAP=3118.01;SAR=1945;SRF=588;SRP=24.4802;SRR=485;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:11,8:11:392:8:284:-20.1838,0,-29.9005	1/1:39:1,38:1:36:38:1340:-117.299,-8.1419,0	1/1:46:0,46:0:0:46:1635:-147.429,-13.8474,0	0/1:54:26,28:26:928:28:1008:-74.7807,0,-67.5826	0/1:14:9,5:9:320:5:176:-11.9706,0,-24.9279	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:40:21,19:21:737:19:669:-48.4927,0,-54.6094	1/1:34:0,34:0:0:34:1201:-108.394,-10.235,0	0/1:28:18,10:18:640:10:356:-23.9524,0,-49.5005	0/1:34:14,20:14:504:20:705:-53.5372,0,-35.4631	1/1:407:0,407:0:0:407:14379:-1293.88,-122.519,0	0/1:100:53,47:53:1895:47:1684:-121.744,0,-140.724	1/1:103:0,103:0:0:103:3660:-329.604,-31.0061,0	1/1:119:0,119:0:0:119:4215:-379.53,-35.8226,0	1/1:50:0,50:0:0:50:1785:-160.931,-15.0515,0	0/1:86:47,39:47:1672:39:1380:-98.6074,0,-124.879	1/1:101:0,101:0:0:101:3611:-325.196,-30.404,0	1/1:61:0,61:0:0:61:2149:-193.674,-18.3628,0	0/1:125:25,100:25:887:100:3554:-282.44,0,-42.5194	0/1:47:25,22:25:896:22:783:-56.6445,0,-66.8119	0/1:51:22,28:22:788:28:1000:-74.9427,0,-55.8717	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	1/1:29:2,27:2:72:27:968:-80.6006,-1.89315,0	0/1:17:6,11:6:216:11:374:-28.8689,0,-14.673	1/1:68:0,68:0:0:68:2418:-217.875,-20.47,0	0/1:66:24,42:24:860:42:1467:-112.453,0,-57.8539	0/1:43:22,21:22:792:21:737:-53.7063,0,-58.6614	1/1:63:0,63:0:0:63:2245:-202.313,-18.9649,0	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3053	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:186:1,185:1:36:185:6527:-583.921,-52.3933,0	1/1:117:7,110:7:248:110:3912:-329.608,-12.5563,0	1/1:274:0,274:0:0:274:9666:-869.904,-82.4822,0	1/1:361:0,361:0:0:361:12667:-1139.86,-108.672,0	1/1:154:4,150:4:140:150:5354:-469.049,-33.414,0	1/1:177:0,177:0:0:177:6313:-568.263,-53.2823,0	0/1:26:15,11:15:540:11:377:-26.4297,0,-41.1098	0/1:181:31,150:31:1116:150:5328:-425.17,0,-46.2653	1/1:40:0,40:0:0:40:1395:-125.845,-12.0412,0	1/1:39:1,38:1:36:38:1364:-119.462,-8.1419,0	1/1:200:0,200:0:0:200:7021:-631.961,-60.206,0	0/1:60:24,36:24:856:36:1278:-97.2611,0,-59.2993	0/1:82:36,46:36:1296:46:1639:-123.113,0,-92.2595	1/1:74:0,74:0:0:74:2615:-235.594,-22.2762,0	0/1:32:13,19:13:460:19:676:-51.535,0,-32.1024	1/1:22:0,22:0:0:22:783:-70.7929,-6.62266,0	1/1:49:1,48:1:36:48:1708:-150.405,-11.1522,0	0/1:30:18,12:18:644:12:428:-29.8279,0,-49.2597	0/1:47:24,23:24:860:23:818:-59.7928,0,-63.5734	0/1:38:17,21:17:612:21:748:-56.2062,0,-43.9743	1/1:130:0,130:0:0:130:4587:-412.998,-39.1339,0	0/1:39:18,21:18:644:21:756:-56.6271,0,-46.5504	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:94:0,94:0:0:94:3307:-297.848,-28.2968,0	1/1:35:0,35:0:0:35:1220:-110.101,-10.5361,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:240:2,238:2:68:238:8334:-743.621,-65.7895,0	1/1:85:3,82:3:104:82:2923:-253.602,-15.8847,0	0/1:28:11,17:11:381:17:604:-46.2618,0,-26.1918	1/1:119:2,117:2:72:117:4143:-366.215,-28.9858,0	1/1:81:2,79:2:72:79:2801:-245.304,-17.5467,0	0/1:36:12,24:12:428:24:856:-66.524,0,-28.0217	1/1:48:0,48:0:0:48:1700:-153.284,-14.4494,0	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:50:22,28:22:784:28:992:-74.5429,0,-55.8324	1/1:32:0,32:0:0:32:1119:-101.015,-9.63296,0	0/1:344:47,297:47:1671:297:10437:-835.712,0,-47.1222	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	1/1:111:0,111:0:0:111:3950:-355.693,-33.4143,0	1/1:191:0,191:0:0:191:6709:-603.896,-57.4967,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:25:0,25:0:0:25:885:-79.9665,-7.52575,0	1/1:39:0,39:0:0:39:1395:-125.848,-11.7402,0	1/1:44:0,44:0:0:44:1547:-139.518,-13.2453,0	0/1:39:21,18:21:737:18:633:-45.5558,0,-54.9105	0/1:32:9,23:9:324:23:820:-64.4896,0,-19.8729	1/1:110:1,109:1:36:109:3803:-338.871,-29.515,0	0/1:52:24,28:24:860:28:980:-72.8566,0,-62.0683	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	1/1:71:1,70:1:36:70:2478:-219.673,-17.7749,0	1/1:118:0,118:0:0:118:4219:-379.89,-35.5215,0	1/1:108:0,108:0:0:108:3847:-346.427,-32.5112,0	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	0/1:116:57,59:57:2052:59:2065:-151.198,0,-150.032	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9624	0/1:68:31,37:31:1116:37:1328:-99.3522,0,-80.2817	0/1:68:34,34:34:1216:34:1185:-86.4799,0,-89.2765	0/1:317:41,275:41:1468:275:9680:-775.676,0,-36.9308	0/1:527:53,474:53:1899:474:16756:-1349.07,0,-12.5444	0/1:116:61,55:61:2192:55:1934:-139.416,0,-162.626	1/1:100:0,100:0:0:100:3555:-320.158,-30.103,0	1/1:135:3,132:3:108:132:4727:-415.499,-30.5639,0
chr10	13306083	.	C	A	47966.1	PASS	AB=0.477683;ABP=29.373;AC=53;AF=0.281915;AN=188;AO=2935;CIGAR=1X;DP=12234;DPB=12234;DPRA=1.12609;EPP=6376.28;EPPR=20078.4;GTI=3;LEN=1;MEANALT=1.08065;MQM=58.0215;MQMR=59.973;NS=94;NUMALT=1;ODDS=0.433576;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104760;QR=332225;RO=9293;RPL=0;RPP=6376.28;RPPR=20078.4;RPR=2935;RUN=1;SAF=2935;SAP=6376.28;SAR=0;SRF=9293;SRP=20182.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:11,10:11:387:10:352:-25.6513,0,-28.8443	0/0:316:314,2:314:11231:2:57:0,-89.7122,-1005.26	0/0:240:240,0:240:8544:0:0:0,-72.2472,-768.963	0/1:268:144,124:144:5156:124:4441:-318.171,0,-383.499	0/1:87:43,43:43:1544:43:1517:-110.588,0,-113.151	0/1:52:26,26:26:932:26:932:-68.4999,0,-68.5428	0/1:129:61,68:61:2192:68:2444:-181.003,0,-158.713	0/0:134:134,0:134:4800:0:0:0,-40.338,-432.156	0/1:78:56,22:56:1994:22:790:-47.9362,0,-156.252	0/1:107:53,54:53:1892:54:1928:-141.43,0,-138.348	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.114	0/1:54:25,29:25:896:29:1040:-77.6518,0,-64.7047	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/0:93:93,0:93:3322:0:0:0,-27.9958,-299.197	0/0:75:75,0:75:2683:0:0:0,-22.5772,-241.714	0/1:66:32,34:32:1135:34:1224:-90.5858,0,-82.5901	0/0:74:74,0:74:2634:0:0:0,-22.2762,-237.306	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.03	0/1:54:35,19:35:1260:19:680:-45.0828,0,-97.4499	0/1:358:182,176:182:6490:176:6274:-456.108,0,-476.418	0/1:177:104,73:104:3732:73:2601:-180.971,0,-282.797	0/0:361:361,0:361:12936:0:0:0,-108.672,-1163.98	0/1:45:29,16:29:1040:16:572:-37.8596,0,-80.3671	0/0:124:114,10:114:4076:10:356:0,-4.99516,-334.694	0/1:88:47,41:47:1692:41:1471:-106.162,0,-126.076	0/0:359:358,1:358:12803:1:36:0,-104.473,-1148.49	0/1:244:154,90:154:5516:90:3233:-217.469,0,-423.114	0/1:38:18,20:18:648:20:720:-53.6824,0,-47.2127	0/0:357:354,3:354:12615:3:108:0,-97.3957,-1123.45	0/1:178:99,78:99:3548:78:2760:-193.706,0,-265.886	0/0:121:120,0:120:4300:0:0:0,-36.1236,-386.817	0/1:4:3,1:3:108:1:36:-2.39371,0,-8.87105	0/1:17:10,7:10:356:7:252:-17.9086,0,-27.2637	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:208:208,0:208:7432:0:0:0,-62.6142,-668.924	0/1:368:163,205:163:5848:205:7345:-549.784,0,-415.651	0/1:63:28,35:28:986:35:1256:-94.1391,0,-70.0873	0/1:3:1,2:1:36:2:72:-5.93279,0,-2.69518	0/0:254:253,1:253:9068:1:36:0,-72.8638,-812.497	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.54	0/1:162:84,78:84:2990:78:2746:-198.37,0,-220.565	0/1:108:52,56:52:1872:56:1955:-143.432,0,-136.248	0/0:88:88,0:88:3155:0:0:0,-26.4906,-284.173	0/1:102:54,48:54:1916:48:1686:-121.223,0,-142.012	0/0:161:161,0:161:5751:0:0:0,-48.4658,-517.707	0/0:265:263,2:263:9420:2:72:0,-73.0489,-840.85	0/1:161:91,70:91:3268:70:2520:-178.414,0,-245.872	0/1:222:101,121:101:3615:121:4324:-322.156,0,-258.726	0/1:144:80,64:80:2848:64:2296:-163.311,0,-213.211	0/1:15:3,12:3:108:12:428:-34.3329,0,-5.55972	0/1:295:134,160:134:4773:160:5721:-425.862,0,-340.865	0/1:95:48,47:48:1716:47:1688:-123.476,0,-126.125	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:189:189,0:189:6779:0:0:0,-56.8947,-610.18	0/1:32:18,14:18:640:14:489:-34.6926,0,-48.2964	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:27:11,15:11:396:15:540:-40.6576,0,-27.7963	0/1:83:46,37:46:1639:37:1324:-94.3951,0,-122.812	0/0:121:121,0:121:4315:0:0:0,-36.4246,-388.527	0/1:19:11,8:11:388:8:288:-20.5405,0,-29.5378	0/1:249:111,138:111:3968:138:4948:-369.788,0,-282.354	0/0:234:234,0:234:8365:0:0:0,-70.441,-752.845	0/1:103:65,38:65:2323:38:1364:-91.9104,0,-178.323	0/0:143:143,0:143:5107:0:0:0,-43.0473,-459.504	0/1:295:174,121:174:6239:121:4257:-294.243,0,-472.799	0/0:209:206,3:206:7388:3:108:0,-52.9,-654.931	0/1:29:15,14:15:536:14:504:-36.9182,0,-39.8445	0/1:83:32,51:32:1132:51:1836:-140.49,0,-77.2031	0/0:121:121,0:121:4330:0:0:0,-36.4246,-389.873	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.077	0/0:157:156,1:156:5558:1:36:0,-43.6634,-496.748	0/0:102:102,0:102:3644:0:0:0,-30.7051,-328.165	0/0:139:139,0:139:4996:0:0:0,-41.8432,-449.757	0/0:271:271,0:271:9679:0:0:0,-81.5791,-871.063	0/1:197:114,82:114:4072:82:2943:-205.532,0,-307.306	0/1:183:99,84:99:3531:84:3020:-216.892,0,-262.911	0/1:6:3,3:3:108:3:104:-7.85018,0,-8.26739	0/1:165:90,75:90:3220:75:2696:-192.914,0,-240.353	0/1:217:131,86:131:4687:86:3037:-207.456,0,-356.667	0/0:254:253,1:253:9034:1:36:0,-72.8643,-809.442	0/0:111:111,0:111:3953:0:0:0,-33.4143,-355.961	0/0:74:74,0:74:2629:0:0:0,-22.2762,-236.856	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.275	0/1:153:85,68:85:3032:68:2424:-172.167,0,-227.054	0/1:35:27,8:27:959:8:284:-15.3673,0,-76.0893	0/1:60:25,35:25:892:35:1251:-94.7316,0,-62.5379	0/1:72:35,37:35:1252:37:1328:-98.1211,0,-91.3109	0/1:49:16,33:16:572:33:1176:-91.2015,0,-37.063	0/1:92:51,41:51:1816:41:1472:-104.878,0,-136.027	0/1:134:47,87:47:1658:87:3074:-236.457,0,-109.168	0/0:171:171,0:171:6123:0:0:0,-51.4761,-551.169	0/0:91:91,0:91:3235:0:0:0,-27.3937,-291.373
chr10	13306121	.	T	C	43164	PASS	AB=0.468761;ABP=52.9372;AC=53;AF=0.281915;AN=188;AO=2782;CIGAR=1X;DP=11919;DPB=11919;DPRA=1.16563;EPP=6044.05;EPPR=19832.9;GTI=3;LEN=1;MEANALT=1.07937;MQM=58.0536;MQMR=59.9664;NS=94;NUMALT=1;ODDS=0.114996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97143;QR=326128;RO=9132;RPL=2782;RPP=6044.05;RPPR=19832.9;RPR=0;RUN=1;SAF=2782;SAP=6044.05;SAR=0;SRF=9132;SRP=19832.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:12,10:12:424:10:352:-25.3502,0,-31.8738	0/0:307:306,1:306:10942:1:36:0,-88.8179,-981.077	0/0:231:231,0:231:8245:0:0:0,-69.5379,-742.062	0/1:264:145,118:145:5172:118:4145:-293.28,0,-386.083	0/1:82:43,39:43:1540:39:1309:-93.3574,0,-114.051	0/1:51:26,25:26:908:25:867:-62.9471,0,-66.6798	0/1:126:61,65:61:2188:65:2303:-169.451,0,-159.256	0/0:133:133,0:133:4748:0:0:0,-40.037,-427.477	0/1:75:54,21:54:1931:21:744:-44.7015,0,-151.489	0/1:101:52,49:52:1855:49:1733:-125.264,0,-136.825	0/0:73:73,0:73:2569:0:0:0,-21.9752,-231.457	0/1:53:25,28:25:888:28:995:-73.9065,0,-64.2844	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.359	0/1:63:30,33:30:1058:33:1146:-84.4682,0,-76.5647	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/0:107:107,0:107:3809:0:0:0,-32.2102,-343.005	0/1:54:35,19:35:1243:19:659:-43.3293,0,-95.9182	0/1:353:180,173:180:6448:173:6028:-435.728,0,-474.14	0/1:175:104,71:104:3720:71:2446:-167.647,0,-282.321	0/0:355:355,0:355:12685:0:0:0,-106.866,-1141.44	0/1:41:28,13:28:1004:13:460:-29.3278,0,-78.3327	0/0:125:115,10:115:4136:10:360:0,-4.93338,-339.726	0/1:85:46,38:46:1602:38:1351:-96.2111,0,-118.816	0/0:358:357,1:357:12751:1:36:0,-104.172,-1143.81	0/1:226:148,78:148:5297:78:2728:-177.487,0,-408.824	0/1:37:18,19:18:648:19:650:-47.6754,0,-47.5138	0/0:353:352,1:352:12587:1:36:0,-102.667,-1129.01	0/1:175:99,76:99:3534:76:2654:-185.455,0,-265.587	0/0:112:112,0:112:4003:0:0:0,-33.7154,-360.459	0/1:4:3,1:3:108:1:36:-2.39371,0,-8.87105	0/1:17:10,7:10:352:7:252:-17.9086,0,-26.9007	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/0:208:208,0:208:7428:0:0:0,-62.6142,-668.565	0/1:351:159,192:159:5653:192:6695:-496.682,0,-403.226	0/1:59:26,32:26:932:32:1122:-83.252,0,-66.3793	0/1:3:1,2:1:36:2:72:-5.93279,0,-2.69518	0/0:246:245,1:245:8759:1:36:0,-70.4555,-784.699	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/1:155:82,73:82:2922:73:2526:-180.777,0,-216.555	0/1:107:53,54:53:1886:54:1872:-136.356,0,-137.807	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.099	0/1:97:53,44:53:1880:44:1514:-107.291,0,-140.276	0/0:162:162,0:162:5777:0:0:0,-48.7669,-520.046	0/0:263:261,2:261:9324:2:72:0,-72.4468,-832.075	0/1:157:89,68:89:3184:68:2390:-167.927,0,-239.521	0/1:216:102,114:102:3660:114:4024:-297.003,0,-264.581	0/1:140:78,62:78:2796:62:2182:-154.271,0,-209.736	0/1:15:3,12:3:108:12:414:-33.0661,0,-5.55972	0/1:292:134,157:134:4787:157:5509:-407.759,0,-342.97	0/1:90:47,43:47:1675:43:1527:-110.502,0,-123.941	0/0:15:15,0:15:523:0:0:0,-4.51545,-47.3985	0/0:188:188,0:188:6730:0:0:0,-56.5936,-605.773	0/1:31:17,14:17:608:14:491:-35.1335,0,-45.7201	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:27:11,16:11:392:16:576:-43.9531,0,-27.4922	0/1:77:43,34:43:1548:34:1177:-83.0115,0,-116.434	0/0:118:118,0:118:4196:0:0:0,-35.5215,-377.821	0/1:19:11,8:11:396:8:288:-20.5405,0,-30.2632	0/1:243:113,130:113:4028:130:4532:-334.608,0,-289.556	0/0:229:228,1:228:8131:1:32:0,-65.737,-728.597	0/1:99:65,34:65:2324:34:1196:-78.1273,0,-179.561	0/0:144:144,0:144:5176:0:0:0,-43.3483,-465.218	0/1:283:168,115:168:6019:115:3965:-271.593,0,-456.622	0/0:207:205,2:205:7329:2:64:0,-56.2595,-653.586	0/1:27:15,12:15:518:12:409:-29.0022,0,-38.8173	0/1:80:30,50:30:1072:50:1762:-134.732,0,-72.7101	0/0:121:121,0:121:4300:0:0:0,-36.4246,-387.177	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/0:151:150,1:150:5371:1:36:0,-41.8573,-479.923	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/0:135:135,0:135:4824:0:0:0,-40.639,-434.285	0/0:266:266,0:266:9504:0:0:0,-80.074,-855.318	0/1:185:109,76:109:3912:76:2668:-184.511,0,-296.582	0/1:173:96,76:96:3443:76:2700:-191.061,0,-257.943	0/1:6:3,3:3:108:3:108:-8.22255,0,-8.26739	0/1:165:89,76:89:3179:76:2589:-183.273,0,-236.664	0/1:213:129,84:129:4579:84:2944:-200.357,0,-348.157	0/0:252:251,1:251:8962:1:36:0,-72.2623,-802.962	0/0:111:111,0:111:3954:0:0:0,-33.4143,-356.052	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.397	0/0:101:101,0:101:3597:0:0:0,-30.404,-323.936	0/1:146:81,65:81:2903:65:2242:-157.929,0,-217.554	0/1:32:26,6:26:910:6:203:-8.96822,0,-72.5811	0/1:56:26,30:26:932:30:1045:-77.3744,0,-67.3412	0/1:68:33,35:33:1184:35:1239:-91.3196,0,-86.3983	0/1:44:15,29:15:527:29:1018:-78.4935,0,-34.5149	0/1:92:52,40:52:1836:40:1375:-96.2321,0,-137.823	0/1:130:45,85:45:1594:85:2919:-223.743,0,-104.615	0/0:169:169,0:169:6063:0:0:0,-50.8741,-545.77	0/0:87:87,0:87:3107:0:0:0,-26.1896,-279.857
chr10	13888269	.	A	C	113285	PASS	AB=0.500692;ABP=3.02533;AC=139;AF=0.739362;AN=188;AO=5444;CIGAR=1X;DP=7264;DPB=7264;DPRA=0;EPP=11824.5;EPPR=3948.58;GTI=1;LEN=1;MEANALT=1.03191;MQM=54.0819;MQMR=59.6384;NS=94;NUMALT=1;ODDS=0.664978;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194303;QR=65120;RO=1817;RPL=5444;RPP=11824.5;RPPR=3948.58;RPR=0;RUN=1;SAF=0;SAP=11824.5;SAR=5444;SRF=0;SRP=3948.58;SRR=1817;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:27,16:27:964:16:572:-38.6586,0,-74.1128	1/1:91:0,91:0:0:91:3267:-292.017,-27.3937,0	1/1:169:0,169:0:0:169:6064:-543.943,-50.8741,0	0/1:212:100,111:100:3584:111:3960:-292.094,0,-258.243	0/1:72:29,43:29:1028:43:1536:-115.676,0,-71.1404	0/1:45:23,21:23:828:21:756:-54.3357,0,-61.1913	0/1:111:53,58:53:1904:58:2068:-152.551,0,-138.222	1/1:67:0,67:0:0:67:2396:-214.791,-20.169,0	0/1:60:34,26:34:1216:26:932:-65.3644,0,-91.6684	0/1:80:42,38:42:1496:38:1341:-96.7279,0,-110.847	1/1:48:0,48:0:0:48:1705:-153.056,-14.4494,0	0/1:52:24,28:24:860:28:1004:-74.5771,0,-62.0601	1/1:46:0,46:0:0:46:1647:-147.943,-13.8474,0	1/1:47:0,47:0:0:47:1665:-149.722,-14.1484,0	1/1:39:0,39:0:0:39:1400:-125.881,-11.7402,0	0/1:21:11,10:11:396:10:360:-26.3762,0,-29.6611	1/1:50:0,50:0:0:50:1796:-161.436,-15.0515,0	1/1:34:0,34:0:0:34:1216:-109.343,-10.235,0	0/1:26:16,10:16:576:10:356:-24.4771,0,-44.34	0/1:149:64,85:64:2296:85:3025:-226.239,0,-162.029	0/1:87:51,36:51:1824:36:1288:-89.0742,0,-138.231	1/1:139:0,139:0:0:139:4951:-444.568,-41.8432,0	1/1:112:1,111:1:36:111:3933:-349.378,-30.1171,0	1/1:100:6,94:6:216:94:3332:-278.306,-10.3125,0	0/1:81:50,31:50:1796:31:1086:-72.9094,0,-137.533	1/1:251:0,251:0:0:251:8938:-802.94,-75.5585,0	0/1:167:86,81:86:3065:81:2870:-206.376,0,-225.531	0/1:30:16,14:16:576:14:504:-36.4527,0,-43.1441	1/1:257:0,257:0:0:257:9183:-824.928,-77.3647,0	0/1:89:34,55:34:1216:55:1976:-150.992,0,-82.9467	1/1:98:0,98:0:0:98:3481:-312.522,-29.5009,0	1/1:9:0,9:0:0:9:324:-29.464,-2.70927,0	0/1:9:5,4:5:180:4:144:-10.5855,0,-13.8381	1/1:8:0,8:0:0:8:288:-26.2073,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.7408,-1.80618,0	0/1:4:1,3:1:36:3:108:-8.65753,0,-2.39415	1/1:164:0,164:0:0:164:5873:-527.499,-49.3689,0	0/1:169:95,74:95:3408:74:2645:-186.887,0,-256.05	0/1:46:23,23:23:828:23:824:-60.3553,0,-60.987	0/1:3:1,2:1:36:2:68:-5.48976,0,-2.69518	1/1:128:4,124:4:140:124:4408:-382.104,-25.5892,0	1/1:29:0,29:0:0:29:1044:-93.9422,-8.72987,0	0/1:129:64,65:64:2292:65:2332:-170.584,0,-167.695	0/1:35:18,17:18:640:17:612:-44.1647,0,-47.3933	1/1:39:0,39:0:0:39:1380:-124.123,-11.7402,0	0/1:124:58,66:58:2084:66:2364:-175.301,0,-150.5	1/1:86:0,86:0:0:86:3057:-273.056,-25.8886,0	1/1:146:0,146:0:0:146:5192:-466.148,-43.9504,0	0/1:115:65,50:65:2332:50:1800:-127.39,0,-175.514	0/1:112:60,52:60:2152:52:1872:-134.81,0,-160.197	0/1:176:75,101:75:2696:101:3613:-271.791,0,-189.897	0/1:2:1,1:1:36:1:36:-2.99362,0,-2.99621	0/1:106:37,69:37:1328:69:2472:-190.058,0,-87.8554	0/1:54:33,21:33:1180:21:752:-51.6336,0,-90.2506	1/1:29:0,29:0:0:29:1036:-92.5618,-8.72987,0	1/1:99:1,98:1:36:98:3500:-310.619,-26.2037,0	0/1:41:16,25:16:564:25:892:-68.009,0,-38.7481	1/1:7:0,7:0:0:7:248:-22.6583,-2.10721,0	0/1:9:3,6:3:108:6:216:-17.0766,0,-7.3659	0/1:45:29,16:29:1040:16:572:-38.178,0,-80.3647	1/1:95:2,93:2:72:93:3325:-292.232,-21.7797,0	0/1:6:2,4:2:72:4:144:-11.4118,0,-5.03054	0/1:200:99,101:99:3560:101:3579:-261.635,0,-260.377	1/1:122:0,122:0:0:122:4338:-390.037,-36.7257,0	0/1:38:24,14:24:864:14:504:-34.1775,0,-66.6388	1/1:64:0,64:0:0:64:2304:-206.755,-19.2659,0	0/1:139:65,74:65:2336:74:2640:-194.806,0,-168.522	1/1:39:2,37:2:72:37:1320:-111.884,-4.90345,0	0/1:10:4,6:4:144:6:216:-16.7485,0,-10.3033	0/1:40:14,26:14:500:26:932:-71.326,0,-33.2868	1/1:54:0,54:0:0:54:1936:-174.322,-16.2556,0	1/1:18:0,18:0:0:18:648:-58.2529,-5.41854,0	1/1:90:0,90:0:0:90:3203:-285.988,-27.0927,0	1/1:68:0,68:0:0:68:2440:-218.849,-20.47,0	1/1:97:0,97:0:0:97:3454:-309.782,-29.1999,0	1/1:108:0,108:0:0:108:3873:-346.7,-32.5112,0	0/1:125:69,56:69:2472:56:2008:-142.654,0,-185.043	0/1:103:59,44:59:2124:44:1570:-109.34,0,-160.397	1/1:13:0,13:0:0:13:460:-41.4414,-3.91339,0	1/1:91:0,91:0:0:91:3256:-291.833,-27.3937,0	0/1:82:46,36:46:1656:36:1292:-90.6255,0,-124.624	1/1:194:0,194:0:0:194:6913:-619.873,-58.3998,0	1/1:77:0,77:0:0:77:2763:-248.278,-23.1793,0	1/1:27:0,27:0:0:27:959:-86.4587,-8.12781,0	1/1:48:0,48:0:0:48:1711:-154.021,-14.4494,0	0/1:116:57,59:57:2039:59:2108:-154.742,0,-148.728	0/1:26:13,13:13:468:13:464:-33.8029,0,-34.6247	0/1:56:24,32:24:855:32:1140:-85.7819,0,-60.3961	0/1:41:19,22:19:684:22:788:-58.473,0,-49.5399	0/1:20:10,10:10:360:10:347:-25.4966,0,-26.7237	0/1:66:26,39:26:932:39:1396:-105.549,0,-64.2693	0/1:39:25,14:25:881:14:480:-31.755,0,-67.8633	1/1:81:1,80:1:36:80:2857:-253.136,-20.7852,0	1/1:69:0,69:0:0:69:2439:-219.182,-20.7711,0
chr10	14163129	.	GA	TG,GT	280615	PASS	AB=0.410419,0.588056;ABP=871.359,842.044;AC=114,74;AF=0.606383,0.393617;AN=188;AO=6872,7350;CIGAR=2X,1M1X;DP=14248;DPB=14248.5;DPRA=0,2.50668;EPP=14925.4,15954.6;EPPR=7.35324;GTI=10;LEN=2,1;MEANALT=2.04255,2.23684;MQM=59.313,59.8864;MQMR=60;NS=94;NUMALT=2;ODDS=26376.6;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=32,0;PQR=0;PRO=0;QA=240823,258392;QR=61;RO=2;RPL=6872,7350;RPP=14925.4,15963.3;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,1;SAP=14925.4,15954.6;SAR=6872,7349;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:146:0,40,106:0:0:40,106:1411,3710:-416.992,-302.163,-290.122,-115.181,0,-83.2715	1/2:124:0,90,34:0:0:90,34:3182,1182:-355.554,-96.4455,-69.3528,-259.458,0,-249.223	1/2:293:0,189,103:0:0:189,103:6654,3634:-836.704,-295.88,-238.986,-540.818,0,-509.812	1/2:382:0,128,253:0:0:128,253:4525,8885:-1091.06,-723.218,-684.686,-367.944,0,-291.783	1/2:110:0,51,59:0:0:51,59:1791,2078:-315.019,-169.336,-153.984,-146.034,0,-128.273	1/2:135:0,39,96:0:0:39,96:1360,3368:-384.94,-274.351,-262.611,-110.938,0,-82.0393	1/2:197:0,69,128:0:0:69,128:2435,4478:-562.705,-364.43,-343.659,-198.626,0,-160.094	1/2:269:0,196,73:0:0:196,73:6861,2510:-761.42,-204.171,-145.169,-557.594,0,-535.619	1/2:224:0,68,155:0:0:68,155:2358,5450:-634.698,-443.609,-423.139,-191.077,0,-144.417	1/2:117:0,41,76:0:0:41,76:1425,2659:-331.899,-216.675,-204.333,-115.57,0,-92.6919	1/1:88:0,88,0:0:0:88,0:3092,0:-278.486,-26.4906,0,-278.486,-26.4906,-278.486	1/2:154:0,43,111:0:0:43,111:1520,3984:-448.448,-324.708,-311.764,-124.095,0,-90.6803	1/1:62:0,62,0:0:0:62,0:2177,0:-196.176,-18.6639,0,-196.176,-18.6639,-196.176	1/1:61:0,60,0:0:0:60,0:2089,0:-188,-18.0618,0,-188,-18.0618,-188	1/1:52:0,52,0:0:0:52,0:1849,0:-166.663,-15.6536,0,-166.663,-15.6536,-166.663	1/2:110:0,44,66:0:0:44,66:1546,2352:-317.869,-192.067,-178.821,-126.156,0,-106.288	1/1:40:0,40,0:0:0:40,0:1390,0:-125.385,-12.0412,0,-125.385,-12.0412,-125.385	1/1:26:0,26,0:0:0:26,0:923,0:-83.1715,-7.82678,0,-83.1715,-7.82678,-83.1715	1/2:63:0,12,51:0:0:12,51:410,1812:-181.277,-148.009,-144.397,-33.6124,0,-18.2599	1/2:245:0,53,192:0:0:53,192:1851,6781:-703.12,-552.565,-536.611,-150.904,0,-93.1064	1/2:374:0,99,273:0:0:99,273:3471,9614:-1064.66,-782.651,-752.849,-282.023,0,-199.842	1/2:155:0,100,55:0:0:100,55:3478,1968:-443.565,-160.838,-130.735,-283.081,0,-266.524	1/2:211:0,64,147:0:0:64,147:2239,5091:-595.598,-413.457,-394.191,-182.49,0,-138.238	1/2:83:0,66,17:0:0:66,17:2330,589:-237.943,-48.2158,-28.3478,-190.075,0,-184.957	1/2:191:0,58,133:0:0:58,133:2025,4657:-543.881,-379.257,-361.797,-164.974,0,-124.937	1/2:395:0,270,124:0:0:270,124:9383,4262:-1107.66,-345.051,-263.773,-762.591,0,-725.263	1/2:464:0,171,292:0:0:171,292:5973,10334:-1327.42,-841.802,-790.326,-485.688,0,-397.787	1/2:37:0,15,22:0:0:15,22:538,780:-107.775,-63.9004,-59.3849,-44.2311,0,-37.6084	1/2:415:0,269,145:0:0:269,145:9423,5064:-1177.11,-411.893,-330.915,-765.207,0,-721.558	1/2:229:0,65,164:0:0:65,164:2272,5690:-647.27,-462.481,-442.914,-185.137,0,-135.768	1/1:136:0,136,0:0:0:136,0:4738,0:-426.302,-40.9401,0,-426.302,-40.9401,-426.302	1/2:8:0,6,2:0:0:6,2:212,68:-23.1313,-5.85565,-4.04947,-17.6188,0,-17.0168	1/2:27:0,7,20:0:0:7,20:241,686:-75.6115,-56.0382,-53.931,-19.9171,0,-13.8965	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:19:0,10,9:0:0:10,9:358,313:-54.9959,-25.7958,-22.7855,-29.5526,0,-26.8433	1/2:29:0,10,19:0:0:10,19:356,672:-84.0791,-55.0873,-52.077,-29.3467,0,-23.6271	1/2:223:0,142,79:0:0:142,79:4994,2820:-635.841,-229.899,-187.152,-405.937,0,-382.156	1/2:230:0,69,160:0:0:69,160:2388,5589:-648.629,-454.605,-433.834,-194.011,0,-145.846	1/2:78:0,21,57:0:0:21,57:745,2017:-225.337,-164.642,-158.32,-61.0494,0,-43.8907	2/2:14:0,1,13:0:0:1,13:36,453:-40.7406,-37.8024,-37.5013,-3.91339,-0.616145,0	1/1:163:0,155,7:0:0:155,7:5375,244:-481.993,-46.6597,0,-462.149,-26.7524,-460.041	1/1:34:0,34,0:0:0:34,0:1189,0:-107.313,-10.235,0,-107.313,-10.235,-107.313	1/2:353:0,119,234:0:0:119,234:4135,8162:-1000.1,-664.156,-628.333,-336.294,0,-265.853	1/2:86:0,14,72:0:0:14,72:495,2538:-247.298,-206.984,-202.77,-40.6671,0,-18.993	1/2:82:0,51,31:0:0:51,31:1779,1103:-234.5,-90.2487,-74.8962,-144.604,0,-135.272	1/2:250:0,50,199:0:0:50,199:1741,6990:-710.553,-568.986,-553.934,-141.635,0,-81.7302	1/1:125:0,123,0:0:0:123,0:4323,0:-388.406,-37.0267,0,-388.406,-37.0267,-388.406	1/1:172:0,168,2:0:0:168,2:5828,72:-524.052,-50.573,0,-518.177,-44.6707,-517.575	1/2:197:0,90,107:0:0:90,107:3182,3763:-565.806,-306.658,-279.565,-259.501,0,-227.291	1/2:260:0,120,140:0:0:120,140:4179,4950:-742.901,-403.188,-367.065,-339.743,0,-297.599	1/2:256:0,60,195:0:0:60,195:2108,6842:-728.278,-556.765,-538.703,-171.583,0,-112.883	1/2:12:0,3,9:0:0:3,9:106,320:-35.0654,-26.4331,-25.53,-8.98601,0,-6.27674	1/2:257:0,75,180:0:0:75,180:2624,6348:-730.101,-516.862,-494.285,-213.229,0,-159.044	1/2:189:0,62,127:0:0:62,127:2153,4469:-538.831,-363.822,-345.158,-175.357,0,-137.126	1/2:10:0,4,6:0:0:4,6:144,212:-29.3709,-17.6186,-16.4145,-12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chr10	14603712	.	C	T	66826.5	PASS	AB=0.541318;ABP=31.3621;AC=137;AF=0.744565;AN=184;AO=3154;CIGAR=1X;DP=4044;DPB=4044;DPRA=14.8022;EPP=6825.8;EPPR=1935.62;GTI=2;LEN=1;MEANALT=1;MQM=59.9727;MQMR=59.9966;NS=92;NUMALT=1;ODDS=3.54323;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112860;QR=31771;RO=890;RPL=0;RPP=6851.83;RPPR=1935.62;RPR=3154;RUN=1;SAF=3151;SAP=6825.8;SAR=3;SRF=890;SRP=1935.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:24,22:24:855:22:788:-57.3974,0,-63.4228	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:112:0,112:0:0:112:4007:-360.818,-33.7154,0	0/1:76:34,42:34:1204:42:1496:-112.056,0,-85.7876	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/1:37:27,10:27:960:10:360:-21.6062,0,-75.5782	1/1:70:0,70:0:0:70:2512:-226.314,-21.0721,0	0/1:72:29,43:29:1036:43:1544:-117.561,0,-71.8798	0/1:32:15,17:15:536:17:600:-44.6962,0,-38.9419	1/1:55:0,55:0:0:55:1958:-176.494,-16.5567,0	0/1:74:32,42:32:1140:42:1495:-112.568,0,-80.633	1/1:66:0,66:0:0:66:2345:-211.304,-19.868,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	0/1:88:36,52:36:1292:52:1863:-141.458,0,-90.0931	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	0/1:23:10,13:10:356:13:464:-35.1738,0,-25.4576	0/1:44:20,24:20:720:24:856:-64.1158,0,-51.8835	0/1:45:18,27:18:648:27:968:-73.891,0,-45.1055	1/1:20:1,19:1:36:19:684:-58.2921,-2.42233,0	1/1:53:1,52:1:32:52:1864:-164.84,-12.7553,0	1/1:28:0,28:0:0:28:1004:-90.6755,-8.42884,0	0/1:23:7,16:7:252:16:572:-44.8897,0,-16.1053	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	0/1:92:46,46:46:1652:46:1648:-120.914,0,-121.274	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	1/1:109:0,109:0:0:109:3916:-352.631,-32.8123,0	0/1:44:15,29:15:527:29:1036:-80.3086,0,-34.5149	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:103:0,103:0:0:103:3696:-332.842,-31.0061,0	0/1:21:12,9:12:428:9:324:-23.1842,0,-32.5372	0/1:36:19,17:19:672:17:608:-44.2149,0,-49.9698	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:70:4,66:4:144:66:2372:-200.424,-7.75848,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:72:25,47:25:883:47:1672:-129.093,0,-58.1133	0/1:46:28,18:28:992:18:648:-44.8045,0,-75.747	1/1:40:0,40:0:0:40:1422:-128.276,-12.0412,0	0/1:34:17,17:17:612:17:582:-42.4638,0,-45.1784	1/1:53:0,53:0:0:53:1881:-169.567,-15.9546,0	1/1:60:1,59:1:36:59:2120:-187.47,-14.4635,0	0/1:31:11,20:11:396:20:701:-54.0798,0,-26.6508	0/1:49:24,25:24:856:25:896:-66.2099,0,-62.6106	0/1:38:14,24:14:504:24:856:-65.922,0,-34.259	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:46:17,29:17:608:29:1044:-80.4274,0,-41.2046	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:67:0,67:0:0:67:2388:-215.178,-20.169,0	0/1:24:16,8:16:568:8:288:-19.0427,0,-44.2271	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:43:18,25:18:632:25:900:-68.3767,0,-44.2625	1/1:60:0,60:0:0:60:2138:-192.687,-18.0618,0	.:.:.:.:.:.:.:.	0/1:36:16,20:16:568:20:716:-53.9306,0,-40.6148	1/1:65:1,64:1:36:64:2296:-203.295,-15.9687,0	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:78:30,48:30:1076:48:1715:-131.155,0,-73.6725	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:40:18,22:18:644:22:779:-58.3909,0,-46.2494	0/1:12:9,3:9:320:3:108:-6.4446,0,-25.53	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:68:0,68:0:0:68:2424:-218.377,-20.47,0	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:73:32,41:32:1148:41:1464:-110.081,0,-81.6546	0/1:56:25,31:25:896:31:1112:-83.5337,0,-64.1027	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:45:20,25:20:712:25:896:-67.4131,0,-50.8603	1/1:120:2,118:2:72:118:4224:-373.503,-29.2869,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:82:32,50:32:1144:50:1800:-137.598,0,-78.5851	0/1:16:9,7:9:315:7:252:-18.2125,0,-23.8707	0/1:43:22,21:22:788:21:752:-55.062,0,-58.3005	0/1:43:18,25:18:648:25:900:-68.3767,0,-45.7076	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/1:69:32,37:32:1139:37:1328:-99.0512,0,-82.0458	0/1:41:30,11:30:1068:11:396:-23.6405,0,-84.0898	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:74:0,74:0:0:74:2652:-238.924,-22.2762,0
chr10	14603772	.	CGC	TGC	58640.8	PASS	AB=0.517259;ABP=8.1072;AC=138;AF=0.741935;AN=186;AO=2823;CIGAR=1X2M;DP=3784;DPB=3784;DPRA=0;EPP=6133.08;EPPR=2061.57;GTI=0;LEN=1;MEANALT=1.11828;MQM=59.9851;MQMR=59.9568;NS=93;NUMALT=1;ODDS=0.73283;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100644;QR=33449;RO=948;RPL=2823;RPP=6133.08;RPPR=2061.57;RPR=0;RUN=1;SAF=0;SAP=6133.08;SAR=2823;SRF=0;SRP=2061.57;SRR=948;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:20,19:20:705:19:680:-49.789,0,-52.0351	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:67:0,67:0:0:67:2381:-214.546,-20.169,0	0/1:80:36,44:36:1243:44:1572:-117.689,0,-88.0866	0/1:13:8,5:8:282:5:180:-12.6387,0,-21.808	0/1:17:8,9:8:280:9:324:-24.3883,0,-20.4212	0/1:29:14,14:14:460:14:504:-36.9094,0,-32.9282	1/1:75:1,73:1:36:73:2601:-230.792,-18.9829,0	0/1:25:15,10:15:521:10:356:-24.8555,0,-39.6918	0/1:44:18,26:18:644:26:917:-69.5993,0,-45.0455	1/1:88:0,87:0:0:87:3101:-278.986,-26.1896,0	0/1:71:42,29:42:1484:29:1023:-71.0086,0,-112.481	1/1:40:0,40:0:0:40:1420:-128.097,-12.0412,0	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:44:17,27:17:591:27:953:-72.838,0,-40.269	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	1/1:23:0,23:0:0:23:813:-73.4891,-6.92369,0	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	0/1:72:28,44:28:994:44:1580:-120.817,0,-68.1002	0/1:79:37,42:37:1286:42:1504:-111.87,0,-92.2563	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	0/1:31:11,20:11:388:20:720:-55.7968,0,-25.9249	1/1:58:0,58:0:0:58:2057:-185.4,-17.4597,0	0/1:93:44,49:44:1573:49:1760:-130.688,0,-113.866	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	1/1:98:0,98:0:0:98:3473:-312.78,-29.5009,0	0/1:40:19,21:19:674:21:752:-55.9651,0,-48.9458	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:11:3,8:3:106:8:284:-22.592,0,-6.57777	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:97:0,97:0:0:97:3488:-314.13,-29.1999,0	0/1:19:3,16:3:108:16:576:-46.4554,0,-4.3556	0/1:45:18,27:18:643:27:972:-74.2516,0,-44.6538	.:.:.:.:.:.:.:.	1/1:42:0,42:0:0:42:1478:-133.31,-12.6433,0	1/1:23:0,23:0:0:23:809:-73.1292,-6.92369,0	0/1:79:43,36:43:1528:36:1292:-92.8024,0,-114.032	0/1:39:20,19:20:692:19:684:-50.1502,0,-50.829	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:26:15,11:15:537:11:396:-28.156,0,-40.8385	1/1:47:0,47:0:0:47:1665:-150.127,-14.1484,0	1/1:73:0,73:0:0:73:2590:-233.346,-21.9752,0	0/1:23:11,12:11:382:12:413:-30.5741,0,-27.7878	0/1:64:36,28:36:1282:28:1004:-71.4099,0,-96.4167	0/1:39:18,18:18:645:18:629:-45.7441,0,-47.19	0/1:15:10,5:10:347:5:180:-12.0366,0,-27.0485	0/1:51:28,23:28:990:23:816:-58.4092,0,-74.0614	0/1:16:11,5:11:379:5:180:-11.7356,0,-29.6229	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:52:0,51:0:0:51:1816:-163.362,-15.3525,0	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:13:1,12:1:36:12:428:-35.2605,-0.315115,0	0/1:5:4,1:4:142:1:36:-2.09312,0,-11.6241	0/1:39:15,24:15:525:24:864:-66.3424,0,-35.8393	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:29:16,13:16:566:13:468:-33.7298,0,-42.5408	1/1:56:0,56:0:0:56:1955:-176.22,-16.8577,0	0/1:36:13,23:13:468:23:805:-61.9304,0,-31.6226	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:60:29,31:29:1030:31:1097:-80.9762,0,-74.9506	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:49:28,21:28:988:21:747:-52.8045,0,-74.4825	0/1:23:9,14:9:324:14:504:-38.7744,0,-22.5822	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:49:0,48:0:0:48:1705:-153.452,-14.4494,0	1/1:26:0,24:0:0:24:860:-77.3621,-7.22472,0	1/1:61:0,61:0:0:61:2172:-195.747,-18.3628,0	0/1:71:33,38:33:1169:38:1344:-99.8843,0,-84.1346	0/1:44:24,20:24:862:20:720:-51.8835,0,-64.657	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:47:15,32:15:517:32:1121:-87.0473,0,-32.707	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:44:0,44:0:0:44:1564:-141.052,-13.2453,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:85:39,46:39:1392:46:1640:-122.301,0,-99.9921	0/1:20:11,9:11:385:9:324:-23.4853,0,-28.9643	0/1:52:32,20:32:1101:20:720:-49.4752,0,-83.7405	0/1:44:21,23:21:720:23:828:-61.5988,0,-51.8698	0/1:36:19,17:19:684:17:593:-42.8576,0,-51.0532	0/1:111:43,67:43:1528:67:2373:-180.354,0,-104.339	0/1:45:31,13:31:1096:13:468:-28.8545,0,-85.3449	1/1:45:0,44:0:0:44:1578:-141.886,-13.2453,0	1/1:63:1,62:1:36:62:2220:-196.466,-15.3666,0
chr10	14779121	.	G	A	72477.9	PASS	AB=0.481311;ABP=26.7108;AC=86;AF=0.457447;AN=188;AO=3767;CIGAR=1X;DP=7920;DPB=7920;DPRA=13.3023;EPP=1750.27;EPPR=9014.62;GTI=1;LEN=1;MEANALT=1.03488;MQM=42.6106;MQMR=44.927;NS=94;NUMALT=1;ODDS=0.193919;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134072;QR=147881;RO=4150;RPL=0;RPP=8182.95;RPPR=9014.62;RPR=3767;RUN=1;SAF=2754;SAP=1750.27;SAR=1013;SRF=4150;SRP=9014.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:68:38,30:38:1345:30:1040:-72.6499,0,-98.8774	0/1:89:53,36:53:1904:36:1284:-89.0632,0,-141.033	0/1:92:33,59:33:1188:59:2108:-138.913,0,-78.0393	0/1:20:15,5:15:536:5:176:-9.35945,0,-39.8811	0/0:49:46,3:46:1633:3:108:0,-4.6753,-134.02	0/1:87:44,43:44:1557:43:1536:-98.6828,0,-113.127	0/1:79:51,28:51:1794:28:993:-65.8888,0,-135.134	0/1:53:35,18:35:1226:18:644:-42.3298,0,-92.5039	0/1:68:25,43:25:892:43:1540:-104.827,0,-58.7735	0/1:205:95,110:95:3380:110:3905:-255.32,0,-240.754	0/1:137:67,70:67:2391:70:2497:-183.715,0,-169.663	0/1:118:58,60:58:2084:60:2152:-158.408,0,-148.819	0/1:156:107,49:107:3848:49:1756:-101.142,0,-283.931	0/1:101:53,48:53:1908:48:1708:-106.845,0,-140.215	0/1:83:57,26:57:2027:26:917:-52.6863,0,-149.905	0/1:209:113,96:113:4011:96:3432:-246.178,0,-289.525	0/1:79:57,21:57:2036:21:748:-41.5862,0,-154.19	0/1:105:48,57:48:1728:57:2032:-150.969,0,-120.537	0/1:93:51,42:51:1802:42:1489:-92.5252,0,-132.443	0/1:32:23,9:23:824:9:316:-17.5515,0,-62.1553	0/1:29:10,19:10:345:19:676:-48.449,0,-22.421	0/1:59:30,29:30:1050:29:1025:-65.9689,0,-75.4903	0/1:61:50,11:50:1800:11:396:-14.9545,0,-135.883	0/1:46:22,24:22:784:24:856:-59.1783,0,-54.1635	0/1:184:83,101:83:2961:101:3590:-252.404,0,-208.704	0/1:108:64,44:64:2266:44:1572:-100.295,0,-160.923	0/1:67:34,33:34:1224:33:1169:-78.3275,0,-84.7106	0/1:120:37,83:37:1313:83:2956:-209.31,0,-81.4779	0/1:50:34,16:34:1220:16:576:-33.6961,0,-89.3849	0/1:66:54,12:54:1902:12:424:-14.6178,0,-149.761	0/1:3:2,1:2:72:1:36:-2.44306,0,-5.60175	0/1:10:7,3:7:252:3:93:-5.18586,0,-18.7869	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.9419	0/0:17:17,0:17:597:0:0:0,-5.11751,-52.9338	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.4723	0/1:461:163,298:163:5822:298:10554:-760.512,0,-381.764	0/1:43:20,23:20:720:23:828:-57.4242,0,-48.9102	0/1:106:81,25:81:2888:25:894:-48.3108,0,-224.151	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.38649	0/1:70:45,25:45:1612:25:885:-53.7739,0,-116.973	0/1:73:37,36:37:1332:36:1292:-87.2116,0,-92.5024	0/1:74:41,33:41:1457:33:1180:-77.3673,0,-103.962	0/1:206:88,118:88:3153:118:4204:-278.348,0,-219.967	0/1:114:61,53:61:2176:53:1900:-119.188,0,-159.613	0/1:42:16,26:16:561:26:923:-60.0193,0,-37.7287	0/1:55:42,13:42:1504:13:460:-25.1601,0,-117.004	0/1:96:38,58:38:1322:58:2061:-137.038,0,-89.1475	0/1:68:42,26:42:1482:26:932:-53.6014,0,-111.817	0/1:92:40,52:40:1406:52:1841:-120.558,0,-97.9461	0/1:66:28,38:28:993:38:1332:-90.47,0,-68.9048	0/1:10:8,2:8:288:2:72:-2.64914,0,-23.015	0/1:60:35,25:35:1260:25:896:-62.8986,0,-93.2118	0/1:37:16,21:16:561:21:744:-52.6513,0,-38.2754	0/0:5:5,0:5:176:0:0:0,-1.50515,-15.9054	0/1:41:28,12:28:1000:12:428:-23.8359,0,-74.2469	0/1:31:11,20:11:396:20:697:-47.5961,0,-26.4249	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.77694	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.6861	0/1:64:46,18:46:1652:18:636:-35.11,0,-122.093	0/1:201:108,93:108:3865:93:3336:-210.322,0,-283.505	0/1:6:5,1:5:180:1:36:-1.24836,0,-14.6316	0/1:81:35,46:35:1241:46:1600:-109.342,0,-86.5229	0/1:89:56,33:56:1993:33:1176:-66.8845,0,-150.344	0/1:53:35,18:35:1256:18:648:-38.3005,0,-91.1328	0/1:45:20,25:20:705:25:884:-58.2385,0,-48.9121	0/1:88:67,21:67:2348:21:752:-34.8787,0,-182.262	0/1:64:24,40:24:856:40:1416:-93.3002,0,-56.7466	0/1:89:44,45:44:1565:45:1601:-108.632,0,-106.21	0/1:31:23,8:23:824:8:288:-16.9355,0,-63.1629	0/1:168:102,66:102:3644:66:2334:-150.43,0,-273.836	0/1:14:8,6:8:269:6:216:-13.482,0,-20.2142	0/1:22:16,6:16:561:6:216:-13.1679,0,-43.2165	0/1:27:24,3:24:860:3:108:-1.94736,0,-68.1325	0/1:107:70,37:70:2474:37:1307:-77.8994,0,-179.943	0/1:94:50,44:50:1766:44:1572:-96.3101,0,-128.925	0/1:60:30,30:30:1065:30:1076:-79.0886,0,-76.035	0/1:84:52,32:52:1845:32:1115:-75.3488,0,-137.393	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.72564	0/1:56:28,28:28:985:28:1004:-67.957,0,-67.4582	0/1:50:39,11:39:1362:11:396:-20.925,0,-105.121	0/1:105:32,73:32:1144:73:2582:-174.176,0,-70.557	0/1:202:84,118:84:3012:118:4197:-281.952,0,-208.688	0/1:133:53,80:53:1891:80:2860:-191.515,0,-129.174	0/1:126:75,51:75:2665:51:1828:-110.42,0,-199.79	0/1:333:133,199:133:4722:199:7104:-471.259,0,-321.863	0/1:61:44,17:44:1584:17:608:-36.683,0,-122.334	0/1:124:62,62:62:2232:62:2213:-161.664,0,-158.276	0/1:127:63,64:63:2252:64:2292:-167.191,0,-157.629	0/1:90:35,55:35:1241:55:1951:-136.795,0,-79.966	0/1:163:108,55:108:3884:55:1953:-115.751,0,-284.036	0/1:101:75,26:75:2696:26:936:-45.6257,0,-211.233	0/1:78:27,51:27:957:51:1828:-121.631,0,-61.6301	0/1:254:86,168:86:3096:168:5986:-401.707,0,-199.197
chr10	14779127	.	A	T	81710.9	PASS	AB=0.39969;ABP=906.091;AC=95;AF=0.505319;AN=188;AO=4187;CIGAR=1X;DP=10559;DPB=10559;DPRA=9.16;EPP=1593.11;EPPR=726.783;GTI=6;LEN=1;MEANALT=1.03261;MQM=43.6537;MQMR=42.2688;NS=94;NUMALT=1;ODDS=2.23531;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149711;QR=227666;RO=6369;RPL=0;RPP=9094.97;RPPR=13824.4;RPR=4187;RUN=1;SAF=2969;SAP=1593.11;SAR=1218;SRF=3914;SRP=728.771;SRR=2455;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:664:0:0:0,-5.71957,-53.1978	0/1:87:63,24:63:2238:24:864:-50.278,0,-164.799	0/1:124:99,25:99:3535:25:900:-42.3648,0,-260.115	0/1:153:61,92:61:2192:92:3296:-244.424,0,-126.091	0/1:52:14,38:14:500:38:1364:-103.095,0,-25.6897	0/1:56:11,45:11:381:45:1612:-125.421,0,-14.1165	0/1:97:45,52:45:1612:52:1868:-137.267,0,-102.09	0/1:106:85,21:85:3029:21:756:-34.9298,0,-224.273	0/1:71:53,18:53:1896:18:644:-35.3967,0,-136.439	0/1:84:61,23:61:2192:23:824:-47.0666,0,-157.451	0/1:242:171,71:171:6128:71:2540:-151.582,0,-440.477	0/1:208:141,67:141:5033:67:2379:-147.364,0,-351.425	0/1:154:129,25:129:4596:25:892:-32.6668,0,-348.207	0/1:190:133,57:133:4780:57:2034:-117.136,0,-348.623	0/1:141:48,93:48:1716:93:3332:-252.862,0,-95.183	0/1:135:86,49:86:3075:49:1752:-109.945,0,-220.145	0/1:229:169,60:169:6080:60:2144:-119.246,0,-465.693	0/1:83:26,57:26:932:57:2036:-153.465,0,-54.4605	0/1:126:78,48:78:2799:48:1719:-113.629,0,-203.831	0/1:117:81,36:81:2900:36:1296:-80.3993,0,-211.155	0/1:112:87,25:87:3079:25:896:-44.4864,0,-228.403	0/1:29:20,9:20:720:9:324:-20.518,0,-51.5406	0/1:90:57,33:57:2044:33:1176:-76.2382,0,-144.735	0/1:99:60,39:60:2144:39:1404:-90.8124,0,-154.309	0/1:85:67,18:67:2408:18:648:-30.8982,0,-178.129	0/1:181:99,82:99:3548:82:2903:-204.763,0,-249.936	0/1:228:97,131:97:3472:131:4708:-338.797,0,-210.63	0/1:113:46,67:46:1635:67:2404:-174.614,0,-101.486	0/0:157:143,14:143:5116:14:504:0,-3.39976,-393.382	0/1:83:46,37:46:1648:37:1320:-89.1823,0,-110.846	0/1:77:33,44:33:1184:44:1576:-116.181,0,-77.9648	0/1:14:2,12:2:72:12:432:-33.1952,0,-1.93188	0/1:20:8,12:8:284:12:432:-31.7144,0,-15.8981	0/1:5:1,4:1:36:4:144:-11.5226,0,-2.09312	1/1:17:0,17:0:0:17:608:-53.8424,-5.11751,0	0/1:11:2,9:2:72:9:316:-24.8709,0,-2.3521	0/1:539:465,74:465:16552:74:2628:-72.387,0,-1271.72	0/1:72:34,38:34:1224:38:1348:-95.0136,0,-79.61	0/1:120:87,33:87:3123:33:1188:-68.7172,0,-233.881	1/1:3:0,3:0:0:3:104:-9.33254,-0.90309,0	0/1:131:56,75:56:2004:75:2669:-191.058,0,-121.596	0/1:106:48,58:48:1711:58:2088:-148.919,0,-110.385	0/1:132:100,32:100:3584:32:1144:-59.4472,0,-259.425	0/1:247:194,52:194:6947:52:1859:-90.3248,0,-509.791	0/1:152:108,44:108:3821:44:1558:-92.7856,0,-278.795	0/1:44:28,16:28:1004:16:576:-38.4569,0,-64.7278	0/1:63:43,20:43:1548:20:720:-44.8271,0,-115.427	0/1:149:59,90:59:2084:90:3216:-238.079,0,-123.224	0/1:97:28,69:28:1004:69:2472:-188.287,0,-50.3162	0/1:121:84,37:84:3005:37:1324:-80.8598,0,-215.14	0/1:67:39,28:39:1392:28:1000:-69.2428,0,-94.9503	0/1:13:5,8:5:180:8:288:-22.0639,0,-11.3687	0/1:71:35,36:35:1260:36:1281:-91.784,0,-87.3145	0/1:42:35,7:35:1256:7:248:-9.84754,0,-95.7134	0/1:6:2,4:2:72:4:144:-11.2216,0,-4.40622	0/1:96:64,32:64:2266:32:1140:-70.6298,0,-165.246	0/1:53:20,33:20:720:33:1168:-86.7441,0,-42.4728	0/1:3:1,2:1:36:2:72:-5.87385,0,-2.68614	1/1:12:0,12:0:0:12:424:-37.9691,-3.61236,0	0/1:91:58,33:58:2069:33:1169:-72.3531,0,-148.122	0/1:245:97,148:97:3484:148:5297:-394.322,0,-208.443	1/1:12:1,11:1:36:11:396:-32.294,-0.557822,0	0/1:82:47,35:47:1671:35:1256:-87.4962,0,-113.784	0/1:134:35,99:35:1252:99:3498:-268.034,0,-59.7077	0/1:73:44,29:44:1557:29:1040:-67.5383,0,-109.739	0/1:63:26,37:26:923:37:1311:-96.2493,0,-54.9285	0/1:126:25,101:25:896:101:3623:-281.985,0,-34.7556	0/1:85:40,45:40:1420:45:1612:-116.795,0,-87.1188	0/1:121:63,58:63:2256:58:2058:-138.494,0,-150.02	0/1:42:20,22:20:716:22:784:-56.4223,0,-45.2755	0/1:171:68,103:68:2424:103:3687:-276.838,0,-157.115	0/1:22:16,6:16:563:6:216:-12.8139,0,-42.4005	0/1:46:36,10:36:1292:10:360:-18.0966,0,-90.5621	0/1:36:24,12:24:841:12:427:-27.1299,0,-59.6621	0/1:153:107,46:107:3811:46:1652:-95.4401,0,-274.304	0/1:147:45,102:45:1607:102:3660:-278.982,0,-83.154	0/1:72:43,29:43:1548:29:1044:-70.5398,0,-110.528	0/1:104:52,52:52:1868:52:1845:-131.225,0,-125.582	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.1306	0/1:105:42,63:42:1504:63:2264:-164.916,0,-92.2182	0/1:62:23,39:23:828:39:1392:-104.059,0,-49.4726	0/1:153:72,81:72:2568:81:2892:-207.792,0,-158.949	0/1:249:192,55:192:6874:55:1976:-100.933,0,-503.802	0/1:158:83,75:83:2965:75:2688:-191.426,0,-191.497	0/1:158:110,48:110:3923:48:1727:-103.571,0,-288.251	0/1:401:310,91:310:11066:91:3248:-166.89,0,-802.079	0/1:66:49,17:49:1764:17:608:-34.1598,0,-134.734	0/1:172:111,61:111:3980:61:2192:-140.578,0,-279.648	0/1:169:105,64:105:3772:64:2261:-146.185,0,-264.814	0/1:106:84,22:84:3012:22:788:-35.7618,0,-222.268	0/1:205:126,79:126:4497:79:2836:-182.653,0,-320.244	0/1:152:110,42:110:3935:42:1504:-87.9232,0,-297.111	0/1:105:53,52:53:1904:52:1856:-132.368,0,-118.692	0/1:333:170,163:170:6091:163:5838:-411.78,0,-384.735
chr10	14779134	.	CTC	CGC,CC	264308	PASS	AB=0.611848,0.385608;ABP=1198.93,1253.95;AC=101,87;AF=0.537234,0.462766;AN=188;AO=6807,4245;CIGAR=1M1X1M,1M1D1M;DP=11080;DPB=9664.67;DPRA=0,12.1166;EPP=526.486,497.302;EPPR=12.7819;GTI=5;LEN=1,1;MEANALT=2.14894,2.22727;MQM=44.5913,40.8881;MQMR=45.625;NS=94;NUMALT=2;ODDS=2.41153;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=239645,147902;QR=201;RO=8;RPL=5,0;RPP=14740.8,9220.91;RPPR=20.3821;RPR=6802,4245;RUN=1,1;SAF=4049,2614;SAP=534.691,497.302;SAR=2758,1631;SRF=1;SRP=12.7819;SRR=7;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,24,17:0:0:24,17:819,587:-107.275,-41.896,-34.6713,-65.6975,0,-60.58	1/2:101:0,57,43:0:0:57,43:2028,1508:-277.082,-115.112,-97.9536,-162.009,0,-149.065	1/2:176:0,108,67:0:0:108,67:3813,2352:-480.09,-174.752,-142.241,-305.471,0,-285.302	1/2:147:0,91,56:0:0:91,56:3208,1967:-394.758,-139.167,-111.773,-255.914,0,-239.056	1/2:51:0,38,13:0:0:38,13:1318,464:-137.708,-34.2674,-22.8283,-103.768,0,-99.8543	1/2:58:0,48,10:0:0:48,10:1711,340:-161.405,-25.1373,-10.6878,-136.584,0,-133.574	1/2:95:0,54,41:0:0:54,41:1924,1418:-259.537,-104.534,-88.2782,-155.335,0,-142.993	1/2:142:0,88,53:0:0:88,53:3090,1880:-387.131,-139.817,-113.327,-247.346,0,-231.392	1/2:95:0,60,35:0:0:60,35:2110,1208:-257.73,-89.4968,-71.435,-168.561,0,-158.025	1/2:77:0,39,38:0:0:39,38:1378,1335:-207.67,-97.6218,-85.8816,-110.381,0,-98.9417	1/2:228:0,127,101:0:0:127,101:4464,3536:-617.977,-258.911,-220.68,-359.397,0,-328.993	1/2:264:1,137,125:1:21:137,125:4816,4314:-704.76,-321.611,-281.954,-381.971,0,-345.927	1/2:180:1,97,82:1:21:97,82:3400,2845:-491.828,-220.133,-192.519,-270.538,0,-247.44	1/2:185:0,123,61:0:0:123,61:4316,2139:-496.976,-159.917,-122.89,-337.14,0,-318.777	1/2:136:0,94,42:0:0:94,42:3287,1453:-367.806,-104.541,-76.2445,-263.585,0,-250.942	1/2:130:0,94,36:0:0:94,36:3301,1249:-352.831,-93.1755,-64.8787,-259.981,0,-249.144	1/2:241:0,132,108:0:0:132,108:4663,3802:-675.152,-302.838,-263.102,-372.411,0,-339.9	1/2:83:0,59,24:0:0:59,24:2071,847:-229.87,-65.8162,-48.0554,-164.392,0,-157.168	1/2:134:0,59,75:0:0:59,75:2104,2620:-372.728,-205.27,-187.509,-167.801,0,-145.224	1/2:110:0,74,36:0:0:74,36:2614,1258:-302.975,-92.1361,-69.8598,-211.167,0,-200.33	1/2:109:0,77,32:0:0:77,32:2727,1106:-296.721,-79.7302,-56.5509,-217.311,0,-207.678	1/2:42:0,23,19:0:0:23,19:820,667:-116.976,-51.0305,-44.1068,-66.2851,0,-60.5655	1/2:89:0,58,31:0:0:58,31:2039,1086:-241.243,-78.1685,-60.7088,-163.398,0,-154.066	1/2:94:0,80,14:0:0:80,14:2858,488:-261.237,-36.1376,-12.0552,-225.421,0,-221.207	1/2:81:0,45,36:0:0:45,36:1601,1276:-220.864,-94.5259,-80.9795,-126.672,0,-115.835	1/2:229:0,139,90:0:0:139,90:4867,3179:-636.459,-245.339,-203.496,-391.46,0,-364.367	1/2:212:0,129,83:0:0:129,83:4557,2927:-568.675,-211.726,-172.893,-357.276,0,-332.29	1/2:112:0,67,45:0:0:67,45:2372,1570:-302.877,-117.357,-97.1882,-185.85,0,-172.303	1/2:179:0,102,77:0:0:102,77:3588,2686:-489.448,-200.444,-169.739,-289.337,0,-266.158	1/2:77:0,51,26:0:0:51,26:1797,911:-207.695,-67.0807,-51.7282,-140.94,0,-133.113	1/2:75:0,61,13:0:0:61,13:2157,452:-205.707,-32.9674,-14.6045,-172.824,0,-168.91	1/2:14:0,12,2:0:0:12,2:423,72:-38.7891,-5.54423,-1.93187,-33.5709,0,-32.9688	1/2:19:0,12,7:0:0:12,7:420,239:-49.1378,-16.2862,-12.6738,-33.1575,0,-31.0502	1/1:8:0,8,0:0:0:8,0:280,0:-24.8692,-2.40824,0,-24.8692,-2.40824,-24.8692	1/1:23:0,23,0:0:0:23,0:824,0:-72.9522,-6.92369,0,-72.9522,-6.92369,-72.9522	1/2:16:0,13,2:0:0:13,2:456,68:-40.7245,-4.6274,-0.714009,-36.0883,0,-35.4862	1/2:572:0,299,273:0:0:299,273:10498,9460:-1577.48,-731.228,-641.22,-846.586,0,-764.405	1/2:71:0,37,34:0:0:37,34:1311,1202:-192.023,-89.6886,-78.5505,-102.667,0,-92.4325	1/2:148:0,110,38:0:0:110,38:3907,1306:-411.219,-98.7691,-65.6558,-312.778,0,-301.339	1/1:3:0,3,0:0:0:3,0:108,0:-9.56073,-0.90309,0,-9.56073,-0.90309,-9.56073	1/2:120:0,73,46:0:0:73,46:2607,1623:-321.271,-117.972,-95.9971,-203.285,0,-189.438	1/2:102:0,58,44:0:0:58,44:2054,1527:-274.774,-114.509,-97.0489,-160.595,0,-147.35	1/2:125:0,67,58:0:0:67,58:2371,2064:-338.212,-151.544,-131.375,-187,0,-169.54	1/2:233:0,125,108:0:0:125,108:4404,3704:-626.35,-271.383,-233.754,-355.296,0,-322.785	1/2:139:0,90,48:0:0:90,48:3196,1643:-378.989,-121.216,-94.1233,-257.853,0,-243.404	1/2:71:0,48,23:0:0:48,23:1694,800:-192.189,-56.2377,-41.7883,-136.269,0,-129.345	1/2:90:0,71,19:0:0:71,19:2527,680:-254.214,-51.7333,-30.3602,-202.818,0,-197.099	1/2:143:0,88,55:0:0:88,55:3062,1922:-382.909,-139.429,-112.938,-243.805,0,-227.248	1/2:88:0,67,21:0:0:67,21:2362,735:-241.579,-52.9158,-32.7468,-188.983,0,-182.661	1/2:116:0,69,47:0:0:69,47:2447,1659:-316.467,-119.96,-99.1886,-196.837,0,-182.689	1/2:81:0,47,34:0:0:47,34:1665,1173:-220.888,-87.209,-73.0606,-134.01,0,-123.775	1/2:14:0,11,2:0:0:11,2:396,72:-36.6546,-4.72458,-1.41325,-31.9033,0,-31.3013	1/2:98:0,65,33:0:0:65,33:2315,1147:-273.624,-88.8211,-69.2541,-185.14,0,-175.206	1/2:41:0,24,17:0:0:24,17:840,600:-115.067,-47.462,-40.2373,-67.9485,0,-62.831	1/1:4:0,4,0:0:0:4,0:140,0:-12.7349,-1.20412,0,-12.73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chr10	14779152	.	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chr10	15809886	.	T	A	23660.7	PASS	AB=0.173105;ABP=2501.66;AC=127;AF=0.675532;AN=188;AO=1457;CIGAR=1X;DP=4186;DPB=4186;DPRA=4.99044;EPP=3166.85;EPPR=5922.44;GTI=39;LEN=1;MEANALT=1.03226;MQM=59.965;MQMR=59.9663;NS=94;NUMALT=1;ODDS=0.5168;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52075;QR=97545;RO=2726;RPL=22;RPP=2978.64;RPPR=3495.88;RPR=1435;RUN=1;SAF=1435;SAP=2978.64;SAR=22;SRF=316;SRP=3495.88;SRR=2410;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:32,3:32:1148:3:104:0,-0.833244,-93.927	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:42:1,41:1:36:41:1472:-129.178,-9.04499,0	0/1:110:92,18:92:3304:18:636:-24.4547,0,-264.465	0/1:35:30,5:30:1076:5:180:-6.01602,0,-86.6168	0/0:33:31,2:31:1112:2:68:0,-3.47628,-93.9336	0/1:97:83,14:83:2972:14:504:-16.4982,0,-238.513	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:69:56,13:56:2000:13:468:-21.6886,0,-159.486	0/1:65:59,6:59:2120:6:216:-0.223563,0,-171.502	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:57:47,10:47:1688:10:360:-15.5856,0,-135.048	1/1:26:0,26:0:0:26:936:-84.5561,-7.82678,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:47:36,11:36:1258:11:396:-21.8343,0,-99.3699	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:34:24,10:24:845:10:360:-22.5093,0,-66.1321	0/1:93:83,10:83:2984:10:352:-4.0224,0,-240.796	0/1:90:74,15:74:2656:15:540:-21.785,0,-212.134	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:20:0,20:0:0:20:701:-63.4117,-6.0206,0	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/1:61:50,11:50:1788:11:392:-17.2572,0,-142.84	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:162:142,20:142:5085:20:720:-16.3619,0,-409.025	0/1:19:15,4:15:540:4:140:-7.22501,0,-43.217	1/1:45:0,45:0:0:45:1582:-142.666,-13.5464,0	0/1:96:81,15:81:2908:15:540:-20.0377,0,-233.056	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:26:22,4:22:792:4:144:-5.48684,0,-63.7789	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/0:99:95,4:95:3374:4:140:0,-16.8574,-290.925	0/0:51:48,3:48:1728:3:104:0,-5.64972,-146.094	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	1/1:30:2,28:2:72:28:993:-82.8351,-2.19418,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:100:78,22:78:2789:22:792:-41.4993,0,-220.951	0/1:58:52,6:52:1872:6:216:-2.33077,0,-151.299	1/1:13:1,12:1:36:12:413:-33.8995,-0.315115,0	0/1:57:50,7:50:1792:7:248:-5.50548,0,-144.404	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:86:75,11:75:2700:11:396:-10.0942,0,-217.355	0/1:94:76,18:76:2713:18:644:-29.9938,0,-216.115	0/1:125:101,24:101:3605:24:860:-40.0931,0,-287.026	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:100:96,4:96:3422:4:144:0,-16.7894,-294.878	0/1:38:32,6:32:1152:6:216:-8.35137,0,-92.551	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:56:46,10:46:1652:10:360:-15.8866,0,-132.111	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:18:16,2:16:576:2:72:-1.41818,0,-46.7564	0/1:49:36,13:36:1288:13:464:-27.347,0,-101.473	1/1:28:1,27:1:36:27:953:-82.485,-4.83057,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:164:141,23:141:5053:23:824:-25.1144,0,-405.544	1/1:37:0,37:0:0:37:1309:-118.104,-11.1381,0	0/1:39:33,6:33:1188:6:216:-8.05034,0,-95.4884	1/1:17:1,16:1:36:16:572:-48.2152,-1.51924,0	0/1:106:89,17:89:3180:17:608:-23.1428,0,-254.515	0/1:33:6,27:6:216:27:968:-77.5034,0,-9.85652	0/1:20:16,4:16:576:4:144:-7.29302,0,-46.1544	0/1:52:44,8:44:1569:8:288:-10.6138,0,-125.845	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:15:0,15:0:0:15:524:-47.2986,-4.51545,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:58:1,57:1:36:57:2036:-179.914,-13.8615,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/0:71:65,5:65:2320:5:180:0,-4.87986,-192.508	0/0:73:67,6:67:2397:6:216:0,-2.18468,-196.195	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:29:1,28:1:36:28:1000:-86.7171,-5.1316,0	0/0:53:49,4:49:1764:4:144:0,-2.64097,-145.73	1/1:47:0,47:0:0:47:1658:-149.504,-14.1484,0	1/1:18:1,17:1:36:17:612:-51.8152,-1.82027,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:99:77,22:77:2768:22:792:-41.8037,0,-219.559	0/1:21:18,3:18:648:3:108:-3.75354,0,-52.3303	0/1:44:39,5:39:1404:5:180:-3.30675,0,-113.414	0/1:51:40,11:40:1440:11:396:-20.6302,0,-114.545	0/1:40:31,9:31:1116:9:320:-17.1012,0,-88.7105	0/1:190:168,21:168:5919:21:741:-9.75742,0,-475.505	0/1:49:43,6:43:1540:6:216:-5.04004,0,-124.143	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:25:1,24:1:32:24:860:-74.5225,-4.32644,0
chr10	15953510	.	A	C	4650.23	PASS	AB=0.25367;ABP=1403.38;AC=66;AF=0.351064;AN=188;AO=760;CIGAR=1X;DP=3676;DPB=3676;DPRA=3.06477;EPP=1653.33;EPPR=6330.68;GTI=34;LEN=1;MEANALT=1.02273;MQM=37.0026;MQMR=29.8216;NS=94;NUMALT=1;ODDS=0.301909;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27115;QR=104168;RO=2914;RPL=0;RPP=1653.33;RPPR=6330.68;RPR=760;RUN=1;SAF=760;SAP=1653.33;SAR=0;SRF=2914;SRP=6330.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:424:0:0:0,-3.61236,-28.9444	0/0:53:52,1:52:1860:1:36:0,-12.396,-123.072	0/0:18:18,0:18:640:0:0:0,-5.41854,-42.8231	0/0:47:43,4:43:1536:4:144:0,-6.07075,-101.04	0/1:32:29,3:29:1040:3:108:-0.331169,0,-64.0788	0/1:23:16,7:16:572:7:252:-15.8515,0,-34.2882	0/1:14:11,3:11:392:3:108:-1.8984,0,-22.9635	0/1:54:46,8:46:1636:8:284:-9.37959,0,-96.1282	0/0:25:23,2:23:828:2:72:0,-0.764377,-49.1206	0/1:26:12,14:12:432:14:500:-19.8772,0,-22.5618	0/1:39:32,7:32:1133:7:252:-2.23199,0,-68.1409	0/1:15:11,4:11:392:4:144:-8.65143,0,-21.0829	0/1:34:27,7:27:964:7:248:-12.1968,0,-54.7614	0/1:22:18,4:18:648:4:144:-6.54422,0,-37.7003	0/1:18:12,6:12:432:6:212:-6.56652,0,-22.553	0/1:15:13,2:13:453:2:72:-2.24592,0,-28.5954	0/1:20:13,7:13:464:7:248:-15.7146,0,-26.7434	0/1:30:18,12:18:648:12:424:-29.0758,0,-35.7524	0/1:15:11,4:11:396:4:144:-8.65143,0,-23.3694	0/0:35:30,5:30:1080:5:180:0,-0.493557,-64.9166	0/1:39:28,11:28:992:11:388:-21.9998,0,-57.133	0/1:41:26,15:26:924:15:528:-17.3169,0,-53.2429	0/0:32:29,3:29:1032:3:108:0,-3.52014,-61.2981	0/1:39:30,8:30:1076:8:284:-13.8407,0,-63.7432	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.6486	0/1:77:60,17:60:2140:17:612:-8.9541,0,-124.379	0/1:79:68,11:68:2429:11:387:-11.0193,0,-168.218	0/1:7:5,2:5:176:2:72:-4.65416,0,-11.3036	0/0:39:35,4:35:1256:4:144:0,-2.65818,-78.5198	0/0:22:21,1:21:756:1:36:0,-3.06404,-47.5227	0/1:49:41,8:41:1468:8:284:-1.16436,0,-82.6857	0/0:58:53,5:53:1881:5:172:0,-1.78113,-114.663	0/1:83:67,15:67:2395:15:540:-23.5132,0,-155.964	0/0:202:185,17:185:6586:17:604:0,-6.68578,-415.409	0/1:158:141,17:141:5056:17:599:-6.11704,0,-304.762	0/1:163:104,59:104:3701:59:2112:-137.994,0,-222.766	0/1:19:16,3:16:572:3:108:-0.122868,0,-34.6934	0/1:15:10,5:10:356:5:176:-11.5087,0,-22.2592	0/1:27:24,3:24:856:3:108:-1.83632,0,-54.8322	0/1:51:43,8:43:1536:8:284:-10.2827,0,-103.514	0/1:18:16,2:16:568:2:72:-1.34283,0,-32.6273	0/0:12:11,1:11:396:1:32:0,-0.429304,-24.4582	0/1:25:16,9:16:572:9:320:-19.9715,0,-32.1996	0/1:23:16,7:16:572:7:252:-7.70641,0,-32.0187	0/1:9:7,2:7:252:2:72:-2.74541,0,-15.0169	0/1:7:3,4:3:108:4:144:-5.61315,0,-5.55416	0/1:52:40,12:40:1432:12:432:-23.1354,0,-80.1534	0/1:23:20,3:20:716:3:108:-0.472901,0,-41.2648	0/0:30:26,4:26:932:4:144:0,-0.953242,-52.0828	0/1:74:62,12:62:2228:12:432:-1.52012,0,-158.652	0/1:9:8,1:8:279:1:36:-0.849347,0,-17.7826	0/1:117:93,24:93:3340:24:860:-12.1319,0,-210.808	0/1:47:39,8:39:1396:8:284:-9.23544,0,-83.0395	0/1:8:3,5:3:108:5:180:-7.19005,0,-5.7195	0/1:136:103,33:103:3665:33:1175:-63.3951,0,-218.382	0/1:55:48,7:48:1728:7:252:-6.2185,0,-102.634	0/0:16:15,1:15:540:1:32:0,-2.65762,-33.8178	0/0:79:67,12:67:2404:12:428:0,-1.05533,-146.158	0/0:27:24,3:24:864:3:108:0,-2.19524,-56.0469	0/1:9:4,5:4:140:5:180:-12.2166,0,-7.02791	0/0:20:18,2:18:636:2:72:0,-1.87261,-37.7234	0/0:26:26,0:26:924:0:0:0,-7.82678,-64.4783	0/1:27:9,18:9:324:18:640:-25.8482,0,-15.5451	0/1:44:36,8:36:1296:8:288:-2.69168,0,-71.3986	0/1:6:4,2:4:127:2:72:-4.95519,0,-8.1794	0/1:26:20,6:20:716:6:212:-4.15828,0,-39.4785	0/1:30:25,5:25:896:5:180:-1.01159,0,-50.5766	0/0:56:53,3:53:1887:3:104:0,-9.81161,-115.178	0/1:19:12,7:12:432:7:252:-17.0556,0,-26.4426	0/1:20:9,11:9:324:11:396:-29.5656,0,-17.2517	0/0:10:10,0:10:360:0:0:0,-3.0103,-25.2026	0/1:60:44,16:44:1580:16:568:-14.7964,0,-91.7007	0/0:13:13,0:13:464:0:0:0,-3.91339,-33.4367	0/1:21:11,10:11:392:10:360:-26.0618,0,-20.753	0/1:28:25,3:25:876:3:104:-1.18477,0,-51.8823	0/1:79:61,18:61:2192:18:640:-11.7055,0,-126.924	0/1:10:8,2:8:288:2:72:-3.75107,0,-19.1374	0/1:24:16,8:16:576:8:288:-18.7532,0,-35.5191	0/1:139:90,49:90:3220:49:1752:-112.482,0,-185.771	0/1:83:60,23:60:2160:23:824:-48.6941,0,-120.491	0/1:57:32,25:32:1148:25:900:-63.2513,0,-72.659	0/0:91:83,8:83:2980:8:284:0,-11.4789,-180.109	0/0:8:7,1:7:252:1:36:0,-0.225089,-14.8217	0/1:18:7,11:7:252:11:392:-16.3909,0,-12.2155	0/1:33:26,7:26:932:7:252:-4.03817,0,-52.6518	0/0:14:12,2:12:432:2:72:0,-0.0664336,-24.988	0/1:4:3,1:3:108:1:36:-2.3545,0,-6.6864	0/1:8:4,4:4:144:4:144:-10.7586,0,-10.0079	0/0:11:10,1:10:360:1:32:0,-0.128274,-24.2459	0/1:41:22,19:22:773:19:680:-47.7815,0,-43.1086	0/1:53:38,15:38:1360:15:522:-30.8758,0,-78.4615	0/1:11:9,2:9:324:2:68:-0.813577,0,-19.6288	0/0:34:31,3:31:1108:3:104:0,-4.14487,-66.0485	0/0:28:25,3:25:891:3:108:0,-2.31602,-51.601
chr10	15953534	.	AATCT	TATCT	4330.74	PASS	AB=0.252864;ABP=1345.7;AC=61;AF=0.324468;AN=188;AO=753;CIGAR=1X4M;DP=3753;DPB=3753;DPRA=3.23784;EPP=1638.13;EPPR=6487.04;GTI=30;LEN=1;MEANALT=1.04598;MQM=37.1116;MQMR=29.8641;NS=94;NUMALT=1;ODDS=0.0665903;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23074;QR=105166;RO=2994;RPL=753;RPP=1638.13;RPPR=6452.39;RPR=0;RUN=1;SAF=753;SAP=1638.13;SAR=0;SRF=2990;SRP=6469.7;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:419:0:0:0,-3.61236,-28.7796	0/0:56:55,1:55:1931:1:36:0,-13.2991,-128.654	0/0:20:20,0:20:693:0:0:0,-6.0206,-47.1224	0/0:46:42,4:42:1501:4:88:0,-6.81611,-99.901	0/1:32:29,3:29:1025:3:108:-0.331169,0,-63.5161	0/1:23:16,7:16:558:7:243:-15.0615,0,-34.0225	0/1:15:12,3:12:422:3:66:-0.805509,0,-24.8923	0/1:53:46,7:46:1600:7:252:-6.82056,0,-95.3849	0/0:26:24,2:24:817:2:72:0,-1.06541,-49.4759	0/1:26:12,14:12:425:14:308:-16.3076,0,-22.462	0/1:39:32,7:32:1122:7:154:-0.422021,0,-68.2862	0/1:16:11,5:11:373:5:180:-11.5532,0,-20.5345	0/1:35:28,7:28:982:7:248:-11.8957,0,-56.4844	0/1:22:18,4:18:646:4:144:-6.54422,0,-37.6754	0/1:18:12,6:12:429:6:132:-5.03334,0,-22.5235	0/1:15:13,2:13:460:2:72:-2.24592,0,-29.0489	0/1:19:14,5:14:495:5:176:-10.3046,0,-29.6075	0/1:29:18,11:18:642:11:392:-26.5149,0,-35.9759	0/1:17:13,4:13:451:4:144:-8.04937,0,-27.4217	0/0:36:31,5:31:1078:5:110:0,-2.09551,-67.7155	0/1:39:28,11:28:981:11:379:-22.0877,0,-56.9929	0/1:40:26,14:26:917:14:309:-12.4224,0,-53.318	0/0:32:29,3:29:1020:3:66:0,-4.312,-61.9059	0/1:40:30,10:30:1046:10:347:-18.9456,0,-62.034	0/0:1:1,0:1:31:0:0:0,-0.30103,-2.55471	0/1:78:61,17:61:2120:17:357:-4.25041,0,-125.11	0/1:79:67,12:67:2324:12:418:-13.5013,0,-161.199	0/1:7:5,2:5:179:2:72:-4.65416,0,-11.3892	0/0:39:35,4:35:1231:4:99:0,-3.45151,-78.8167	0/0:23:22,1:22:775:1:36:0,-3.36507,-48.5652	0/0:52:44,8:44:1540:8:176:0,-1.78106,-89.9847	0/0:59:54,5:54:1878:5:171:0,-2.18605,-116.546	0/1:83:68,15:68:2396:15:540:-23.4117,0,-156.063	0/0:206:189,17:189:6640:17:608:0,-7.54969,-422.876	0/1:163:143,20:143:5028:20:707:-14.2212,0,-305.887	0/1:165:107,58:107:3757:58:2058:-133.618,0,-228.654	0/0:20:17,3:17:594:3:63:0,-0.978644,-37.4425	0/1:15:10,5:10:343:5:180:-11.8542,0,-21.9581	0/1:30:27,3:27:948:3:108:-0.933229,0,-61.0192	0/1:55:46,9:46:1624:9:324:-12.624,0,-109.291	0/1:19:17,2:17:580:2:72:-1.0418,0,-34.2417	0/0:12:11,1:11:381:1:36:0,-0.0537426,-23.7508	0/1:26:17,9:17:583:9:305:-19.41,0,-33.4616	0/1:24:18,6:18:617:6:132:-3.22716,0,-34.7475	0/1:10:8,2:8:267:2:58:-2.17571,0,-16.5803	0/1:8:3,5:3:107:5:105:-5.87497,0,-5.23904	0/1:54:42,12:42:1490:12:432:-22.5333,0,-84.0901	0/1:24:20,4:20:710:4:116:-2.87436,0,-40.896	0/0:31:27,4:27:947:4:88:0,-2.30066,-55.1245	0/0:75:63,12:63:2243:12:264:0,-1.86352,-162.491	0/0:9:9,0:9:317:0:0:0,-2.70927,-23.8459	0/1:122:98,24:98:3447:24:542:-6.01113,0,-219.476	0/1:48:40,5:40:1410:5:180:-2.51952,0,-84.358	0/1:8:3,5:3:108:5:105:-5.87497,0,-5.7195	0/1:141:109,32:109:3816:32:1146:-59.6226,0,-230.375	0/1:55:48,6:48:1696:6:212:-2.70834,0,-101.936	0/0:16:15,1:15:532:1:22:0,-2.91614,-33.9592	0/0:80:68,12:68:2376:12:252:0,-4.45479,-149.674	0/0:27:24,3:24:853:3:64:0,-2.99285,-56.4427	0/1:10:5,5:5:178:5:164:-11.6505,0,-9.85827	0/0:20:18,2:18:632:2:44:0,-2.40995,-38.159	0/0:26:26,0:26:898:0:0:0,-7.82678,-63.7797	0/1:25:9,16:9:318:16:336:-18.5844,0,-15.6821	0/1:46:38,8:38:1334:8:176:-0.0251192,0,-75.9777	0/1:6:4,2:4:138:2:72:-4.95519,0,-8.53387	0/1:26:20,6:20:705:6:132:-2.6251,0,-39.3483	0/0:30:25,5:25:878:5:110:0,-0.289325,-50.5579	0/0:56:53,3:53:1835:3:80:0,-9.989,-115.271	0/1:24:17,7:17:583:7:248:-15.2071,0,-35.9704	0/1:20:9,11:9:321:11:384:-28.2394,0,-17.21	0/0:10:10,0:10:359:0:0:0,-3.0103,-25.1888	0/1:62:46,16:46:1610:16:366:-10.3939,0,-95.0385	0/0:13:13,0:13:464:0:0:0,-3.91339,-33.6521	0/1:20:11,9:11:396:9:324:-23.1601,0,-21.1586	0/1:30:25,5:25:876:5:171:-6.27226,0,-51.7207	0/1:78:61,17:61:2171:17:388:-7.28713,0,-126.751	0/1:11:9,2:9:319:2:72:-3.45004,0,-21.626	0/1:24:16,8:16:561:8:288:-18.7532,0,-35.0793	0/1:143:94,49:94:3318:49:1756:-113.588,0,-192.966	0/1:84:61,23:61:2164:23:828:-48.7327,0,-121.764	0/1:55:33,22:33:1159:22:788:-53.9201,0,-74.3445	0/0:94:85,8:85:3010:8:176:0,-14.2774,-188.189	0/0:9:8,1:8:284:1:22:0,-0.808928,-17.6556	0/1:18:7,11:7:245:11:242:-13.5849,0,-12.0283	0/1:33:26,7:26:904:7:154:-2.2282,0,-52.0097	0/0:13:12,1:12:424:1:22:0,-2.01305,-26.8986	0/1:4:3,1:3:108:1:36:-2.3545,0,-6.6864	0/1:8:4,4:4:144:4:144:-10.7586,0,-10.0079	0/0:11:10,1:10:356:1:32:0,-0.128274,-24.1843	0/1:45:24,20:24:833:20:711:-49.8393,0,-47.2241	0/1:56:40,16:40:1407:16:558:-32.8991,0,-81.131	0/1:11:9,2:9:317:2:44:-0.29932,0,-19.5249	0/0:34:31,3:31:1104:3:66:0,-4.91406,-66.8409	0/0:28:25,3:25:892:3:66:0,-3.10788,-52.5184
chr10	16169736	.	TCG	TCA,CCA	153253	PASS	AB=0.526316,0.472508;ABP=23.4679,25.3373;AC=138,48;AF=0.741935,0.258065;AN=186;AO=5794,1619;CIGAR=2M1X,1X1M1X;DP=7427;DPB=7427.33;DPRA=0,0.878955;EPP=12584.5,3518.62;EPPR=9.52472;GTI=4;LEN=1,3;MEANALT=1.69892,2.07407;MQM=59.8978,32.2959;MQMR=60;NS=93;NUMALT=2;ODDS=2.32363;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=207669,57691;QR=100;RO=3;RPL=0,0;RPP=12584.5,3518.62;RPPR=9.52472;RPR=5794,1619;RUN=1,1;SAF=5794,1619;SAP=12584.5,3518.62;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:39:0,21,18:0:0:21,18:752,637:-106.567,-45.2144,-38.8928,-61.6846,0,-56.2661	1/1:98:1,97,0:1:28:97,0:3476,0:-310.216,-26.7012,0,-310.517,-29.1999,-312.735	1/1:128:0,128,0:0:0:128,0:4590,0:-413.25,-38.5318,0,-413.25,-38.5318,-413.25	1/2:178:0,79,99:0:0:79,99:2825,3509:-469.552,-239.259,-215.478,-230.625,0,-200.823	1/2:38:0,23,15:0:0:23,15:828,535:-103.62,-36.0225,-29.0988,-67.9204,0,-63.405	1/2:32:0,19,13:0:0:19,13:680,464:-88.2845,-32.8049,-27.0854,-55.8096,0,-51.8962	1/2:89:0,53,36:0:0:53,36:1897,1278:-243.438,-88.7138,-72.7592,-155.051,0,-144.214	1/1:105:0,105,0:0:0:105,0:3760,0:-338.6,-31.6082,0,-338.6,-31.6082,-338.6	1/2:64:0,33,31:0:0:33,31:1182,1109:-174.875,-78.4923,-68.5583,-96.7181,0,-87.3862	1/2:39:0,16,23:0:0:16,23:576,828:-103.631,-56.6107,-51.7942,-47.3581,0,-40.4344	1/1:58:0,58,0:0:0:58,0:2084,0:-187.829,-17.4597,0,-187.829,-17.4597,-187.829	1/2:70:0,32,38:0:0:32,38:1152,1360:-189.1,-95.0804,-85.4474,-94.3572,0,-82.918	1/1:70:0,70,0:0:0:70,0:2520,0:-227.05,-21.0721,0,-227.05,-21.0721,-227.05	1/1:63:0,63,0:0:0:63,0:2260,0:-203.662,-18.9649,0,-203.662,-18.9649,-203.662	1/1:57:0,57,0:0:0:57,0:2044,0:-184.23,-17.1587,0,-184.23,-17.1587,-184.23	1/2:37:0,20,17:0:0:20,17:701,604:-99.1476,-42.0831,-36.0625,-57.3911,0,-52.2736	1/1:63:0,63,0:0:0:63,0:2264,0:-203.927,-18.9649,0,-203.927,-18.9649,-203.927	1/1:44:0,44,0:0:0:44,0:1565,0:-141.14,-13.2453,0,-141.14,-13.2453,-141.14	1/2:46:0,25,21:0:0:25,21:900,748:-126.2,-52.7377,-45.212,-73.7953,0,-67.4736	1/2:145:0,62,83:0:0:62,83:2228,2963:-382.504,-200.719,-182.055,-182.12,0,-157.135	1/2:87:0,46,41:0:0:46,41:1641,1459:-232.394,-98.5911,-84.7438,-134.129,0,-121.787	1/1:95:0,95,0:0:0:95,0:3405,0:-306.656,-28.5979,0,-306.656,-28.5979,-306.656	1/1:60:0,58,2:0:0:58,2:2084,72:-187.523,-17.4597,0,-182.628,-12.2582,-182.026	1/1:86:0,80,6:0:0:80,6:2876,216:-258.782,-24.0824,0,-244.97,-9.97591,-243.163	1/2:56:0,20,36:0:0:20,36:703,1273:-143.562,-86.3226,-80.302,-57.5721,0,-46.735	1/1:257:0,256,1:0:0:256,1:9192,36:-826.762,-77.0637,0,-823.826,-73.7674,-823.525	1/2:83:0,41,42:0:0:41,42:1468,1508:-222.432,-102.704,-90.3615,-120.06,0,-107.417	1/2:39:0,22,17:0:0:22,17:792,610:-105.924,-41.2681,-34.6454,-64.983,0,-59.8655	1/1:208:0,208,0:0:0:208,0:7421,0:-667.931,-62.6142,0,-667.931,-62.6142,-667.931	1/2:84:0,41,43:0:0:41,43:1472,1532:-224.703,-104.601,-92.2588,-120.434,0,-107.49	1/1:139:0,138,0:0:0:138,0:4923,0:-442.853,-41.5421,0,-442.853,-41.5421,-442.853	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:12:0,9,3:0:0:9,3:320,106:-33.704,-7.5872,-4.87793,-26.4331,0,-25.53	.:.:.:.:.:.:.:.	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:7:0,5,2:0:0:5,2:180,70:-19.5168,-4.77484,-3.26969,-15.0469,0,-14.4449	1/1:219:1,217,0:1:36:217,0:7794,0:-696.83,-62.331,0,-697.131,-65.3235,-700.069	1/2:127:0,83,44:0:0:83,44:2980,1572:-351.069,-108.005,-83.0195,-243.388,0,-230.142	1/2:58:0,35,23:0:0:35,23:1260,806:-160.173,-57.3328,-46.7968,-103.169,0,-96.2457	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:93:0,92,1:0:0:92,1:3296,36:-296.553,-27.6948,0,-294.105,-24.9413,-293.804	1/1:42:0,42,0:0:0:42,0:1504,0:-135.655,-12.6433,0,-135.655,-12.6433,-135.655	1/2:141:0,82,59:0:0:82,59:2944,2097:-384.527,-144.349,-119.664,-240.506,0,-222.745	1/2:52:0,21,31:0:0:21,31:756,1107:-137.365,-75.6584,-69.3367,-62.044,0,-52.7121	1/1:69:0,69,0:0:0:69,0:2459,0:-221.562,-20.7711,0,-221.562,-20.7711,-221.562	1/2:58:0,32,26:0:0:32,26:1144,933:-156.653,-63.3442,-53.7112,-93.6366,0,-85.8098	1/1:89:0,89,0:0:0:89,0:3196,0:-287.863,-26.7917,0,-287.863,-26.7917,-287.863	1/1:182:0,182,0:0:0:182,0:6514,0:-586.328,-54.7875,0,-586.328,-54.7875,-586.328	1/2:171:0,110,61:0:0:110,61:3952,2165:-471.652,-149.223,-116.109,-322.753,0,-304.391	1/2:107:0,45,61:0:0:45,61:1612,2180:-279.217,-147.729,-134.182,-131.517,0,-113.154	1/2:172:0,76,95:0:0:76,95:2709,3388:-450.73,-229.889,-207.011,-220.922,0,-192.324	1/2:4:0,1,3:0:0:1,3:36,108:-10.6006,-7.64962,-7.34859,-3.29724,0,-2.39415	1/2:113:0,74,39:0:0:74,39:2660,1388:-314.594,-97.5525,-75.2763,-217.369,0,-205.629	1/2:39:0,14,25:0:0:14,25:504,892:-102.289,-61.1453,-56.9309,-41.4837,0,-33.9579	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:130:0,130,0:0:0:130,0:4649,0:-418.57,-39.1339,0,-418.57,-39.1339,-418.57	1/2:21:0,10,11:0:0:10,11:356,392:-56.1521,-27.1125,-24.1022,-29.3709,0,-26.0596	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.2041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chr10	16169750	.	C	T	18819.9	PASS	AB=0.473201;ABP=24.0762;AC=48;AF=0.258065;AN=186;AO=1612;CIGAR=1X;DP=7361;DPB=7361;DPRA=0.928671;EPP=3503.42;EPPR=12402.2;GTI=3;LEN=1;MEANALT=1.03571;MQM=32.4094;MQMR=59.8895;NS=93;NUMALT=1;ODDS=2.1639;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57734;QR=205228;RO=5746;RPL=0;RPP=3503.42;RPPR=12402.2;RPR=1612;RUN=1;SAF=1612;SAP=3503.42;SAR=0;SRF=5746;SRP=12480.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:21,17:21:748:17:612:-37.015,0,-56.2062	0/0:98:98,0:98:3511:0:0:0,-29.5009,-316.199	0/0:127:127,0:127:4514:0:0:0,-38.2308,-406.414	0/1:175:78,97:78:2768:97:3467:-212.353,0,-196.612	0/1:38:22,15:22:784:15:540:-29.3731,0,-59.5295	0/1:33:20,13:20:716:13:468:-26.9249,0,-54.8337	0/1:89:54,35:54:1931:35:1256:-70.6591,0,-147.272	0/0:104:104,0:104:3719:0:0:0,-31.3071,-334.911	0/1:65:34,31:34:1220:31:1116:-68.9075,0,-90.504	0/1:39:16,23:16:572:23:824:-51.6536,0,-40.0729	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.511	0/1:69:31,38:31:1090:38:1360:-85.8212,0,-77.6368	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.802	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.589	0/1:37:20,17:20:712:17:612:-36.3144,0,-53.2685	0/0:63:63,0:63:2242:0:0:0,-18.9649,-202.038	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:45:24,21:24:864:21:752:-45.7531,0,-64.5362	0/1:146:63,83:63:2260:83:2969:-181.391,0,-159.712	0/1:85:45,40:45:1604:40:1410:-82.214,0,-119.063	0/0:92:92,0:92:3249:0:0:0,-27.6948,-292.622	0/0:60:58,2:58:2065:2:72:0,-12.2582,-180.316	0/0:86:80,6:80:2859:6:216:0,-9.97591,-241.634	0/1:55:20,35:20:711:35:1251:-78.6296,0,-47.759	0/0:251:250,1:250:8944:1:36:0,-71.9603,-801.221	0/1:83:41,42:41:1472:42:1512:-90.4383,0,-107.777	0/1:38:22,16:22:779:16:576:-32.7462,0,-58.9929	0/0:203:203,0:203:7292:0:0:0,-61.1091,-656.324	0/1:83:41,42:41:1472:42:1497:-90.0281,0,-107.791	0/0:136:136,0:136:4848:0:0:0,-40.9401,-436.42	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:12:9,3:9:320:3:108:-4.94035,0,-25.53	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:6:5,1:5:180:1:36:-1.31746,0,-14.7459	0/0:213:213,0:213:7583:0:0:0,-64.1194,-682.327	0/1:123:82,41:82:2931:41:1472:-76.2742,0,-226.965	0/1:58:35,23:35:1256:23:824:-47.922,0,-95.8855	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:91:90,1:90:3214:1:36:0,-24.3392,-286.427	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:139:81,58:81:2896:58:2084:-118.553,0,-218.872	0/1:52:20,32:20:712:32:1148:-72.7164,0,-48.7531	0/0:68:68,0:68:2419:0:0:0,-20.47,-217.966	0/1:58:32,26:32:1139:26:936:-53.7206,0,-85.3586	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/0:178:177,1:177:6297:1:36:0,-49.9855,-563.224	0/1:170:110,60:110:3932:60:2152:-114.779,0,-302.895	0/1:106:45,61:45:1597:61:2183:-134.219,0,-112.109	0/1:170:76,94:76:2703:94:3371:-205.656,0,-191.848	0/1:4:1,3:1:32:3:108:-7.34859,0,-1.99519	0/1:113:73,40:73:2604:40:1432:-78.7023,0,-200.592	0/1:39:14,25:14:504:25:896:-57.1519,0,-33.9579	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:129:129,0:129:4595:0:0:0,-38.8329,-413.716	0/1:22:10,12:10:356:12:432:-26.9367,0,-25.7586	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:27:17,10:17:604:10:356:-19.527,0,-46.5624	0/1:61:28,33:28:1008:33:1180:-70.3479,0,-72.6735	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.915	0/1:9:7,2:7:252:2:68:-2.94669,0,-20.305	0/1:116:65,51:65:2324:51:1832:-106.685,0,-174.489	0/0:122:121,1:121:4314:1:36:0,-33.6711,-385.381	0/1:39:31,8:31:1099:8:288:-11.085,0,-87.4793	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.043	0/1:121:65,56:65:2323:56:2000:-117.555,0,-172.535	0/0:57:56,1:56:2008:1:36:0,-14.1042,-177.938	0/1:20:12,8:12:424:8:288:-16.3406,0,-32.4758	0/1:70:39,31:39:1396:31:1097:-63.8342,0,-104.867	0/0:79:78,1:78:2800:1:32:0,-20.5821,-248.983	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2744	0/0:98:98,0:98:3502:0:0:0,-29.5009,-315.39	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.673	0/0:120:120,0:120:4278:0:0:0,-36.1236,-385.198	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.92	0/1:94:57,37:57:2044:37:1320:-76.1495,0,-155.813	0/1:82:53,29:53:1885:29:1044:-57.6922,0,-145.197	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:118:118,0:118:4231:0:0:0,-35.5215,-380.968	0/1:76:41,34:41:1456:34:1216:-72.9265,0,-108.545	0/0:229:228,0:228:8135:0:0:0,-68.6348,-730.862	0/0:96:96,0:96:3423:0:0:0,-28.8989,-308.277	0/0:65:65,0:65:2331:0:0:0,-19.5669,-210.049	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.945	0/1:117:65,52:65:2328:52:1860:-106.907,0,-174.559	0/1:57:17,40:17:612:40:1436:-95.8008,0,-38.2547	0/1:89:53,36:53:1900:36:1290:-73.0909,0,-144.486	0/1:62:27,35:27:963:35:1251:-80.4207,0,-68.3221	0/1:24:14,10:14:504:10:360:-20.9984,0,-38.4734	0/1:73:25,48:25:896:48:1720:-112.32,0,-58.9843	0/1:50:16,34:16:560:34:1224:-77.3005,0,-35.6771	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.934	0/0:119:119,0:119:4259:0:0:0,-35.8226,-383.488
chr10	16169756	.	T	C	19158.4	PASS	AB=0.46781;ABP=32.9275;AC=48;AF=0.258065;AN=186;AO=1566;CIGAR=1X;DP=7247;DPB=7247;DPRA=0.804859;EPP=3131.27;EPPR=10945;GTI=3;LEN=1;MEANALT=1.09434;MQM=32.3129;MQMR=59.8964;NS=93;NUMALT=1;ODDS=1.7776;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55389;QR=202965;RO=5676;RPL=32;RPP=3131.27;RPPR=10945;RPR=1534;RUN=1;SAF=1566;SAP=3403.54;SAR=0;SRF=5676;SRP=12328.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:22,19:22:780:19:676:-41.413,0,-58.1808	0/0:95:95,0:95:3394:0:0:0,-28.5978,-305.669	0/0:124:124,0:124:4424:0:0:0,-37.3277,-398.32	0/1:172:77,94:77:2743:94:3326:-203.155,0,-195.083	0/1:36:21,15:21:752:15:532:-29.6078,0,-57.1692	0/1:31:19,12:19:680:12:423:-24.2427,0,-52.1972	0/1:87:54,33:54:1935:33:1171:-64.9223,0,-148.234	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.211	0/1:65:35,30:35:1244:30:1055:-64.9849,0,-92.683	0/1:38:15,22:15:536:22:780:-48.92,0,-37.1276	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/1:68:31,37:31:1108:37:1275:-81.0438,0,-79.561	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.853	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.341	0/0:55:55,0:55:1971:0:0:0,-16.5566,-177.661	0/1:37:20,17:20:711:17:587:-35.1485,0,-53.1775	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:44:25,19:25:881:19:684:-40.4813,0,-66.3605	0/1:144:63,81:63:2264:81:2868:-176.344,0,-160.674	0/1:84:45,39:45:1612:39:1370:-79.0698,0,-120.084	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.522	0/0:60:58,2:58:2066:2:68:0,-12.4058,-180.554	0/0:87:81,6:81:2904:6:212:0,-10.4194,-245.825	0/1:52:19,33:19:684:33:1184:-73.822,0,-46.2368	0/0:248:248,0:248:8850:0:0:0,-74.6554,-796.42	0/1:82:40,42:40:1412:42:1500:-90.2987,0,-102.676	0/1:38:21,17:21:756:17:600:-34.6201,0,-56.9281	0/0:205:205,0:205:7329:0:0:0,-61.7111,-659.654	0/1:79:38,40:38:1364:40:1414:-85.2283,0,-99.2736	0/0:137:137,0:137:4904:0:0:0,-41.2411,-441.447	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:12:9,3:9:324:3:108:-4.94035,0,-25.8935	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:7:5,2:5:180:2:61:-2.99462,0,-14.4449	0/0:212:212,0:212:7602:0:0:0,-63.8184,-683.098	0/1:124:81,43:81:2883:43:1519:-80.603,0,-222.347	0/1:54:34,20:34:1216:20:686:-38.8556,0,-93.4909	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:91:90,1:90:3220:1:36:0,-24.3392,-286.968	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:138:79,59:79:2803:59:2095:-120.595,0,-210.963	0/1:51:20,31:20:716:31:1099:-69.6241,0,-49.4136	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/1:57:31,26:31:1108:26:923:-53.453,0,-82.8723	0/0:86:86,0:86:3053:0:0:0,-25.8886,-274.999	0/0:176:176,0:176:6281:0:0:0,-52.9813,-565.337	0/1:164:107,57:107:3810:57:2019:-106.843,0,-293.726	0/1:105:44,61:44:1567:61:2160:-134.074,0,-109.712	0/1:168:74,93:74:2623:93:3303:-202.364,0,-185.25	0/1:4:1,3:1:36:3:108:-7.34859,0,-2.39415	0/1:112:73,39:73:2611:39:1387:-75.7011,0,-201.522	0/1:35:14,21:14:504:21:739:-46.7904,0,-35.162	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.607	0/1:21:9,12:9:324:12:419:-26.5664,0,-23.1842	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:27:16,11:16:568:11:396:-22.4176,0,-43.3237	0/1:60:29,31:29:1044:31:1104:-64.8897,0,-76.213	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.915	0/1:9:7,2:7:252:2:68:-2.94669,0,-20.305	0/1:116:68,48:68:2423:48:1708:-97.516,0,-183.33	0/0:121:120,1:120:4263:1:36:0,-33.3701,-380.795	0/1:39:31,8:31:1100:8:284:-10.9431,0,-87.5701	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.089	0/1:117:64,53:64:2287:53:1872:-109.564,0,-170.871	0/0:57:56,1:56:1996:1:36:0,-14.1042,-176.859	0/1:19:11,8:11:396:8:269:-15.5987,0,-30.2632	0/1:72:40,32:40:1436:32:1148:-66.992,0,-107.864	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.523	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.914	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.484	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.36	0/0:114:114,0:114:4072:0:0:0,-34.3174,-366.668	0/0:133:133,0:133:4784:0:0:0,-40.037,-430.714	0/1:92:57,35:57:2052:35:1244:-70.8417,0,-157.221	0/1:81:53,28:53:1895:28:987:-53.1662,0,-146.399	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.219	0/1:78:43,35:43:1531:35:1239:-74.4172,0,-114.6	0/0:229:229,0:229:8209:0:0:0,-68.9359,-737.873	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.972	0/0:65:65,0:65:2331:0:0:0,-19.5669,-210.049	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.638	0/1:115:65,50:65:2336:50:1758:-100.873,0,-175.881	0/1:54:17,37:17:612:37:1315:-87.5821,0,-39.1578	0/1:89:54,35:54:1927:35:1239:-70.2991,0,-146.914	0/1:60:26,34:26:928:34:1198:-77.5436,0,-65.7765	0/1:24:15,9:15:528:9:324:-18.1869,0,-40.6266	0/1:72:25,46:25:896:46:1627:-105.347,0,-59.2209	0/1:50:17,33:17:608:33:1150:-73.1167,0,-40.0001	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.725	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.82
chr10	16171089	.	A	G	169511	PASS	AB=0.484455;ABP=14.0143;AC=139;AF=0.739362;AN=188;AO=8027;CIGAR=1X;DP=10748;DPB=10748;DPRA=0;EPP=17242.9;EPPR=5846.56;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9894;MQMR=59.9952;NS=94;NUMALT=1;ODDS=0.372801;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286014;QR=97294;RO=2715;RPL=22;RPP=17242.9;RPPR=5846.56;RPR=8005;RUN=1;SAF=8027;SAP=17433.4;SAR=0;SRF=2715;SRP=5898.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:44,26:44:1580:26:902:-60.4182,0,-121.415	1/1:96:0,96:0:0:96:3437:-309.541,-28.8989,0	1/1:177:0,177:0:0:177:6335:-570.239,-53.2823,0	0/1:295:172,123:172:6157:123:4350:-302.869,0,-465.423	0/1:45:27,18:27:972:18:648:-45.1055,0,-74.2516	0/1:74:33,41:33:1173:41:1452:-108.697,0,-83.5993	0/1:157:90,67:90:3213:67:2382:-167.373,0,-242.13	1/1:126:0,125:0:0:125:4462:-401.389,-37.6288,0	0/1:115:64,51:64:2236:51:1812:-128.741,0,-166.879	0/1:84:34,50:34:1224:50:1770:-134.294,0,-85.1805	1/1:115:0,115:0:0:115:4124:-371.344,-34.6185,0	0/1:157:80,77:80:2876:77:2764:-201.739,0,-211.814	1/1:109:0,109:0:0:109:3901:-351.282,-32.8123,0	1/1:101:0,101:0:0:101:3597:-323.936,-30.404,0	1/1:102:0,102:0:0:102:3653:-328.972,-30.7051,0	0/1:80:27,53:27:972:53:1892:-146.476,0,-63.7155	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:60:25,35:25:900:35:1260:-95.6437,0,-63.2592	0/1:92:50,42:50:1773:42:1504:-107.96,0,-132.156	0/1:176:96,80:96:3456:80:2803:-199.524,0,-258.27	1/1:76:0,76:0:0:76:2689:-242.255,-22.8783,0	1/1:173:1,172:1:36:172:6091:-544.693,-48.4799,0	1/1:104:4,100:4:144:100:3564:-307.653,-17.9935,0	0/1:104:55,49:55:1965:49:1749:-126.385,0,-145.816	1/1:264:1,263:1:36:263:9377:-840.291,-75.8736,0	0/1:321:162,159:162:5820:159:5667:-413.516,0,-427.28	0/1:46:18,28:18:629:28:999:-76.3778,0,-43.0864	1/1:414:0,414:0:0:414:14754:-1327.59,-124.626,0	0/1:165:89,76:89:3200:76:2688:-192.493,0,-238.552	1/1:153:0,153:0:0:153:5460:-491.456,-46.0576,0	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	0/1:19:8,11:8:288:11:390:-29.7189,0,-20.5478	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/1:18:8,10:8:288:10:345:-25.9623,0,-20.8489	1/1:236:0,236:0:0:236:8456:-761.038,-71.0431,0	0/1:134:75,59:75:2692:59:2116:-150.371,0,-202.18	0/1:59:29,30:29:1040:30:1080:-79.7525,0,-76.1536	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:113:2,111:2:72:111:3945:-348.403,-27.1797,0	1/1:50:0,50:0:0:50:1781:-160.571,-15.0515,0	0/1:123:86,37:86:3081:37:1317:-81.8031,0,-240.489	0/1:76:39,37:39:1404:37:1322:-96.4028,0,-103.781	1/1:81:0,81:0:0:81:2866:-258.176,-24.3834,0	0/1:134:66,68:66:2357:68:2388:-174.833,0,-172.049	1/1:123:1,121:1:36:121:4259:-379.888,-33.4872,0	1/1:208:1,207:1:36:207:7394:-661.905,-59.016,0	0/1:107:52,55:52:1872:55:1942:-142.842,0,-136.549	0/1:165:106,59:106:3812:59:2086:-138.337,0,-293.606	0/1:202:105,97:105:3745:97:3446:-249.543,0,-276.442	0/1:11:4,7:4:144:7:237:-18.3477,0,-10.0023	0/1:199:95,104:95:3420:104:3734:-276.355,0,-248.107	0/1:49:37,12:37:1313:12:432:-24.4707,0,-103.719	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:171:0,171:0:0:171:6041:-543.79,-51.4761,0	0/1:74:44,30:44:1580:30:1061:-73.5222,0,-120.215	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:25:17,8:17:608:8:288:-18.7417,0,-47.5263	0/1:118:65,52:65:2340:52:1849:-131.255,0,-175.426	1/1:157:1,156:1:36:156:5600:-500.522,-43.6634,0	0/1:5:2,3:2:72:3:93:-7.17158,0,-5.33157	0/1:213:99,114:99:3556:114:4073:-302.635,0,-256.128	1/1:236:0,236:0:0:236:8423:-758.071,-71.0431,0	0/1:97:37,60:37:1317:60:2126:-162.405,0,-89.6299	1/1:110:0,110:0:0:110:3925:-353.442,-33.1133,0	0/1:133:60,73:60:2156:73:2590:-193.309,0,-154.27	1/1:189:1,188:1:36:188:6683:-597.949,-53.2964,0	0/1:82:28,54:28:1008:54:1919:-148.301,0,-66.3519	0/1:88:50,38:50:1785:38:1368:-96.9302,0,-134.44	1/1:46:0,46:0:0:46:1633:-147.257,-13.8474,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:159:0,158:0:0:158:5650:-508.257,-47.5627,0	1/1:110:0,110:0:0:110:3937:-354.52,-33.1133,0	1/1:208:0,208:0:0:208:7374:-663.71,-62.6142,0	1/1:248:1,247:1:36:247:8774:-786.046,-71.0572,0	0/1:96:42,54:42:1508:54:1921:-144.266,0,-107.116	0/1:75:39,36:39:1404:36:1284:-93.2862,0,-104.082	1/1:11:0,11:0:0:11:388:-35.2568,-3.31133,0	1/1:132:0,132:0:0:132:4740:-426.757,-39.736,0	0/1:108:57,50:57:2048:50:1785:-128.361,0,-152.022	1/1:178:2,176:2:72:176:6238:-554.675,-46.7466,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:121:0,121:0:0:121:4326:-389.512,-36.4246,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:148:68,80:68:2448:80:2863:-213.354,0,-176.022	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	0/1:86:41,45:41:1472:45:1608:-119.121,0,-106.888	0/1:137:56,80:56:2008:80:2861:-216.427,0,-139.693	0/1:78:33,45:33:1184:45:1616:-122.25,0,-83.388	0/1:210:108,102:108:3854:102:3643:-264.857,0,-283.837	0/1:103:63,40:63:2264:40:1432:-98.1715,0,-173.016	1/1:194:0,194:0:0:194:6890:-619.796,-58.3998,0	1/1:122:0,122:0:0:122:4392:-395.45,-36.7257,0
chr10	16171135	.	A	T	47233.5	PASS	AB=0.510022;ABP=7.79799;AC=48;AF=0.258065;AN=186;AO=2814;CIGAR=1X;DP=11268;DPB=11268;DPRA=1.01721;EPP=6113.53;EPPR=18338.9;GTI=1;LEN=1;MEANALT=1.07143;MQM=59.9364;MQMR=59.9831;NS=93;NUMALT=1;ODDS=1.13974;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100127;QR=301571;RO=8448;RPL=0;RPP=6113.53;RPPR=18347.6;RPR=2814;RUN=1;SAF=0;SAP=6113.53;SAR=2814;SRF=1;SRP=18338.9;SRR=8447;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:20,13:20:712:13:468:-32.5257,0,-54.4727	0/0:196:193,3:193:6879:3:108:0,-48.9267,-609.104	0/0:124:124,0:124:4423:0:0:0,-37.3277,-398.24	0/1:351:190,161:190:6783:161:5741:-411.142,0,-504.88	0/1:37:24,13:24:855:13:464:-30.9594,0,-66.1321	0/1:64:35,29:35:1243:29:1029:-73.6531,0,-92.9079	0/1:153:79,74:79:2840:74:2628:-190.711,0,-209.78	0/0:105:105,0:105:3749:0:0:0,-31.6081,-337.609	0/1:123:57,66:57:2044:66:2344:-174.192,0,-147.205	0/1:125:48,76:48:1724:76:2708:-206.275,0,-117.758	0/0:40:40,0:40:1418:0:0:0,-12.0412,-127.916	0/1:85:38,47:38:1364:47:1660:-124.1,0,-97.4732	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.018	0/0:93:93,0:93:3311:0:0:0,-27.9958,-298.209	0/1:58:34,24:34:1207:24:856:-59.9014,0,-91.4755	0/0:103:103,0:103:3672:0:0:0,-31.0061,-330.682	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:34:15,19:15:532:19:684:-51.6553,0,-37.9781	0/1:206:99,107:99:3549:107:3816:-281.621,0,-257.604	0/1:227:108,119:108:3855:119:4248:-314.147,0,-278.812	0/0:110:110,0:110:3943:0:0:0,-33.1133,-355.061	0/0:109:109,0:109:3915:0:0:0,-32.8123,-352.541	0/0:147:142,5:142:5058:5:180:0,-27.6993,-438.812	0/1:91:34,57:34:1216:57:2025:-155.126,0,-82.3528	0/0:418:417,0:417:14904:0:0:0,-125.53,-1340.72	0/1:251:144,106:144:5144:106:3746:-261.706,0,-387.475	0/1:50:26,24:26:932:24:844:-61.2168,0,-69.1474	0/0:430:430,0:430:15407:0:0:0,-129.443,-1386.33	0/1:259:80,179:80:2830:179:6375:-495.87,0,-176.97	0/0:196:196,0:196:7018:0:0:0,-59.0019,-631.681	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:285:285,0:285:10195:0:0:0,-85.7935,-917.477	0/1:152:64,86:64:2282:86:3062:-230.296,0,-160.126	0/1:51:21,30:21:744:30:1076:-81.8003,0,-51.9318	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:213:212,1:212:7553:1:36:0,-60.5211,-676.212	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/1:171:88,83:88:3143:83:2962:-215.337,0,-231.619	0/1:122:59,63:59:2103:63:2207:-162.167,0,-152.813	0/0:87:87,0:87:3105:0:0:0,-26.1896,-279.676	0/1:143:78,65:78:2789:65:2320:-166.012,0,-208.201	0/0:173:173,0:173:6175:0:0:0,-52.0782,-555.847	0/0:149:149,0:149:5325:0:0:0,-44.8535,-479.383	0/1:173:79,94:79:2814:94:3341:-248.052,0,-201.421	0/1:205:81,124:81:2907:124:4423:-336.532,0,-200.153	0/1:238:119,119:119:4242:119:4235:-309.686,0,-310.315	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:158:74,84:74:2635:84:2988:-221.586,0,-189.833	0/1:33:20,13:20:711:13:464:-32.1071,0,-54.2224	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:206:205,1:205:7315:1:36:0,-58.4139,-654.802	0/1:67:26,40:26:936:40:1420:-107.87,0,-64.3317	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:11:5,6:5:165:6:212:-16.1135,0,-11.8623	0/1:86:48,38:48:1720:38:1340:-95.0114,0,-129.197	0/0:113:113,0:113:4025:0:0:0,-34.0164,-362.439	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:400:218,182:218:7782:182:6478:-462.694,0,-579.998	0/0:214:213,1:213:7589:1:36:0,-60.8221,-679.451	0/1:78:47,31:47:1688:31:1097:-75.5577,0,-128.727	0/0:119:119,0:119:4267:0:0:0,-35.8226,-384.207	0/1:198:99,99:99:3552:99:3520:-257.406,0,-260.279	0/0:87:86,1:86:3052:1:36:0,-22.5913,-271.31	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/1:98:50,48:50:1758:48:1709:-124.594,0,-128.998	0/0:101:101,0:101:3575:0:0:0,-30.404,-321.955	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/0:85:85,0:85:3030:0:0:0,-25.5875,-272.56	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.475	0/0:139:139,0:139:4912:0:0:0,-41.8432,-442.231	0/0:267:267,0:267:9554:0:0:0,-80.375,-859.812	0/1:62:23,39:23:824:39:1379:-105.744,0,-55.8195	0/1:161:73,88:73:2596:88:3127:-233.192,0,-185.421	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:152:150,2:150:5375:2:72:0,-38.9198,-477.044	0/1:92:58,34:58:2076:34:1216:-82.0518,0,-159.416	0/0:262:262,0:262:9375:0:0:0,-78.8699,-843.711	0/0:128:127,1:127:4528:1:36:0,-34.9336,-402.835	0/0:79:79,0:79:2808:0:0:0,-23.7814,-252.958	0/0:125:125,0:125:4448:0:0:0,-37.6287,-400.491	0/1:187:96,91:96:3426:91:3251:-236.518,0,-252.261	0/1:59:36,23:36:1288:23:806:-55.0974,0,-98.4628	0/1:97:54,43:54:1940:43:1526:-108.16,0,-145.676	0/1:80:37,43:37:1332:43:1536:-114.451,0,-96.1	0/1:16:5,11:5:176:11:392:-30.8036,0,-11.3685	0/1:70:34,36:34:1216:36:1284:-94.7913,0,-88.6745	0/1:96:40,56:40:1414:56:2004:-151.735,0,-98.6569	0/0:175:175,0:175:6256:0:0:0,-52.6802,-563.133	0/0:171:171,0:171:6084:0:0:0,-51.4761,-547.661
chr10	16521408	.	G	A	24162.3	PASS	AB=0.537458;ABP=35.7086;AC=55;AF=0.295699;AN=186;AO=1450;CIGAR=1X;DP=4542;DPB=4542;DPRA=1.16354;EPP=3151.65;EPPR=6715.03;GTI=0;LEN=1;MEANALT=1;MQM=54.309;MQMR=59.6952;NS=93;NUMALT=1;ODDS=2.27536;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51441;QR=110267;RO=3091;RPL=0;RPP=3151.65;RPPR=6715.03;RPR=1450;RUN=1;SAF=1450;SAP=3151.65;SAR=0;SRF=3091;SRP=6715.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:14,14:14:489:14:504:-36.7516,0,-35.9098	0/1:44:23,21:23:824:21:744:-53.7899,0,-61.238	0/1:69:31,38:31:1116:38:1353:-99.4951,0,-79.9548	0/1:79:30,49:30:1076:49:1730:-130.745,0,-73.3691	0/0:32:32,0:32:1125:0:0:0,-9.63296,-101.556	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.22	0/0:81:81,0:81:2908:0:0:0,-24.3834,-260.933	0/1:66:41,25:41:1472:25:885:-59.5375,0,-112.892	0/0:62:62,0:62:2205:0:0:0,-18.6639,-198.705	0/1:51:28,23:28:993:23:824:-59.0737,0,-74.3229	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7621	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.4756	0/1:33:19,14:19:680:14:500:-35.2866,0,-51.587	0/1:29:16,13:16:572:13:468:-33.6604,0,-43.0836	0/1:24:13,11:13:464:11:396:-28.7298,0,-34.8728	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:19:19,0:19:665:0:0:0,-5.71957,-60.1728	0/1:25:16,9:16:572:9:324:-21.9059,0,-44.2877	0/1:74:29,45:29:1044:45:1620:-122.742,0,-71.9939	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.08	0/1:71:29,42:29:1044:42:1455:-109.655,0,-72.9017	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.818	0/1:74:39,35:39:1396:35:1245:-89.6657,0,-103.658	0/1:53:22,31:22:784:31:1082:-81.4737,0,-54.9009	0/1:153:69,84:69:2441:84:2970:-221.225,0,-173.886	0/0:140:140,0:140:4957:0:0:0,-42.1442,-446.257	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:137:48,89:48:1720:89:3161:-243.134,0,-113.815	0/0:65:64,1:64:2285:1:36:0,-15.9738,-202.282	0/0:71:71,0:71:2514:0:0:0,-21.3731,-226.412	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9661	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	0/1:8:4,4:4:144:4:140:-10.5112,0,-10.9054	0/1:86:38,48:38:1338:48:1705:-127.662,0,-94.7907	0/1:127:60,67:60:2137:67:2381:-175.756,0,-154.347	0/1:24:12,12:12:408:12:432:-31.8979,0,-29.8194	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.6326	0/1:70:36,34:36:1296:34:1224:-88.9925,0,-95.8637	0/1:22:14,8:14:504:8:288:-19.6075,0,-39.0708	0/1:71:33,38:33:1188:38:1353:-100.506,0,-85.8427	0/1:33:14,19:14:500:19:669:-50.553,0,-35.4022	0/1:25:5,20:5:180:20:690:-54.8327,0,-9.02631	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.385	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.161	0/1:93:41,52:41:1457:52:1834:-136.078,0,-103.424	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.531	0/1:48:18,30:18:644:30:1035:-78.7095,0,-43.8295	0/1:123:58,65:58:2050:65:2298:-168.429,0,-147.681	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4988	0/1:65:32,33:32:1148:33:1184:-86.9751,0,-84.0547	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:13:4,9:4:144:9:320:-24.5986,0,-9.40023	0/1:62:30,32:30:1080:32:1137:-83.8265,0,-78.8403	0/1:39:19,20:19:684:20:690:-50.4431,0,-50.1478	1/1:2:0,2:0:0:2:72:-6.8333,-0.60206,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.703	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.878	.:.:.:.:.:.:.:.	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.822	0/0:123:123,0:123:4397:0:0:0,-37.0267,-395.884	0/1:47:28,19:28:978:19:669:-46.0512,0,-74.1803	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.376	0/1:102:42,60:42:1466:60:2156:-161.524,0,-101.516	0/1:82:22,60:22:788:60:2148:-168.509,0,-46.558	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:46:46,0:46:1592:0:0:0,-13.8474,-143.542	0/1:29:15,14:15:540:14:504:-36.954,0,-40.2067	0/1:9:3,6:3:108:6:216:-17.0647,0,-7.3659	0/0:63:63,0:63:2241:0:0:0,-18.9649,-201.909	0/1:22:13,9:13:468:9:320:-22.4504,0,-35.8288	0/0:141:141,0:141:5037:0:0:0,-42.4452,-453.461	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:40:26,14:26:936:14:485:-31.5649,0,-72.4466	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:39:38,0:38:1360:0:0:0,-11.4391,-122.244	0/1:47:24,23:24:845:23:805:-58.084,0,-62.199	0/1:124:56,68:56:1986:68:2406:-179.11,0,-141.68	0/1:42:27,15:27:968:15:536:-35.8977,0,-74.7761	0/1:20:9,11:9:324:11:396:-29.9339,0,-23.4853	0/1:28:16,12:16:576:12:432:-30.5825,0,-43.7461	0/1:67:32,35:32:1148:35:1253:-92.4186,0,-83.4608	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.681	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5431	0/1:18:6,12:6:212:12:413:-32.0308,0,-14.0016	0/1:53:26,27:26:921:27:968:-70.9227,0,-67.2378	0/1:30:9,21:9:324:21:733:-57.1156,0,-20.475	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.368	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.812
chr10	16714404	.	A	G	281.072	PASS	AB=0.209906;ABP=312.937;AC=15;AF=0.0797872;AN=188;AO=147;CIGAR=1X;DP=4017;DPB=4017;DPRA=0.995982;EPP=322.217;EPPR=8406.61;GTI=8;LEN=1;MEANALT=1;MQM=59.9184;MQMR=59.9527;NS=94;NUMALT=1;ODDS=0.264758;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=5245;QR=138568;RO=3870;RPL=0;RPP=322.217;RPPR=8406.61;RPR=147;RUN=1;SAF=147;SAP=322.217;SAR=0;SRF=3870;SRP=8406.61;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.231	0/0:27:25,2:25:892:2:72:0,-1.29109,-73.763	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:49:47,2:47:1684:2:72:0,-7.91375,-145.01	0/1:52:44,8:44:1576:8:284:-10.2498,0,-126.478	0/0:36:33,3:33:1172:3:108:0,-0.76191,-95.7123	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:26:25,1:25:900:1:36:0,-4.2285,-77.7227	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.082	0/0:28:26,2:26:932:2:72:0,-1.59212,-77.3621	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:98:92,6:92:3293:6:212:0,-10.0761,-276.935	0/0:103:103,0:103:3688:0:0:0,-31.0061,-330.934	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:112:108,4:108:3876:4:144:0,-20.4017,-335.72	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:17:17,0:17:612:0:0:0,-5.11751,-54.6325	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:14:4,10:4:140:10:352:-27.8038,0,-8.73016	0/0:113:106,7:106:3812:7:252:0,-10.9874,-320.247	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:35:34,1:34:1205:1:36:0,-6.93777,-105.156	0/1:5:1,4:1:36:4:144:-11.7855,0,-2.09312	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.491	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:55:53,2:53:1904:2:72:0,-9.71993,-164.801	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:39:32,7:32:1152:7:248:-10.924,0,-92.25	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.518	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:58:57,1:57:2048:1:36:0,-13.8615,-180.993	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:70:69,1:69:2472:1:36:0,-17.4738,-219.135	0/0:57:54,3:54:1940:3:104:0,-7.4559,-165.173	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/0:48:44,4:44:1552:4:140:0,-1.50486,-127.027	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:60:58,2:58:2080:2:72:0,-11.2251,-180.634	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:140:140,0:140:5016:0:0:0,-42.1442,-451.586	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:24:22,2:22:788:2:72:0,-0.387997,-64.4081	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:34:29,5:29:1036:5:180:-6.31705,0,-83.3189	0/1:31:27,4:27:972:4:144:-3.98169,0,-78.466	0/0:42:41,1:41:1476:1:36:0,-9.04498,-129.538	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:45:42,3:42:1497:3:108:0,-3.47118,-124.947	0/0:15:14,1:14:500:1:36:0,-0.917175,-41.7379	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.086	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.915	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.666	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.453	0/0:58:56,2:56:1996:2:72:0,-10.623,-173.077	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.115	0/1:49:44,5:44:1576:5:180:-1.8016,0,-127.381	0/0:42:41,1:41:1476:1:36:0,-9.04498,-129.538	0/0:27:25,2:25:900:2:72:0,-1.29109,-74.4843	0/0:71:66,5:66:2372:5:165:0,-6.19953,-198.564	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/1:81:71,10:71:2552:10:360:-8.36087,0,-205.547	0/1:54:45,9:45:1616:9:320:-12.8867,0,-129.474	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.627	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341
chr10	16714425	.	G	A	33122.3	PASS	AB=0.493805;ABP=4.32856;AC=95;AF=0.505319;AN=188;AO=1957;CIGAR=1X;DP=3959;DPB=3959;DPRA=0;EPP=4200.63;EPPR=4328.6;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9147;MQMR=60;NS=94;NUMALT=1;ODDS=116.257;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69951;QR=71463;RO=2000;RPL=6;RPP=4200.63;RPPR=4328.6;RPR=1951;RUN=1;SAF=1957;SAP=4252.58;SAR=0;SRF=2000;SRP=4345.96;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:11,13:11:396:13:468:-35.2349,0,-28.758	0/1:31:12,19:12:432:19:680:-52.1972,0,-29.8893	0/1:74:35,39:35:1244:39:1400:-104.023,0,-89.9884	0/1:71:36,35:36:1292:35:1256:-91.9717,0,-95.2106	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:31:12,19:12:432:19:684:-52.5584,0,-29.8893	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/1:32:23,9:23:828:9:324:-19.8729,0,-65.2112	0/1:21:6,15:6:216:15:532:-41.8777,0,-13.4689	0/1:27:21,6:21:752:6:216:-11.6627,0,-59.8784	0/1:46:24,22:24:860:22:792:-57.7583,0,-63.8745	0/1:71:31,40:31:1093:40:1432:-107.804,0,-77.3045	0/1:46:27,19:27:972:19:680:-47.6818,0,-73.9505	0/1:52:33,19:33:1184:19:684:-46.2368,0,-91.2148	0/1:35:17,18:17:595:18:644:-47.7545,0,-43.3406	0/1:57:24,33:24:856:33:1184:-89.7096,0,-60.2024	0/1:41:20,21:20:707:21:756:-56.025,0,-51.6123	0/1:24:16,8:16:568:8:288:-19.0427,0,-44.2271	0/1:26:13,12:13:468:12:432:-31.3356,0,-34.5741	0/1:58:28,30:28:1008:30:1061:-78.3396,0,-73.5766	0/1:52:18,34:18:648:34:1204:-92.9407,0,-42.9983	0/1:28:11,17:11:396:17:594:-45.3564,0,-27.5539	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:18:6,12:6:212:12:428:-33.4403,0,-14.0063	0/1:97:57,40:57:2012:40:1432:-99.9777,0,-152.151	0/1:103:39,64:39:1387:64:2292:-174.678,0,-94.1221	0/1:20:11,9:11:392:9:324:-23.4853,0,-29.5995	0/1:110:63,47:63:2264:47:1676:-118.014,0,-170.909	0/1:51:16,35:16:557:35:1237:-96.2798,0,-35.103	0/1:18:9,9:9:311:9:317:-23.4508,0,-22.9052	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/1:17:6,11:6:216:11:386:-29.765,0,-14.673	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:108:72,36:72:2580:36:1296:-84.4327,0,-199.938	0/1:39:25,14:25:877:14:504:-33.9579,0,-67.505	0/1:33:20,13:20:720:13:468:-32.5257,0,-55.1948	0/1:5:1,4:1:36:4:140:-11.4301,0,-2.09312	0/1:48:25,23:25:892:23:824:-60.0339,0,-66.1502	0/1:30:14,16:14:504:16:572:-42.7825,0,-36.6672	0/1:56:29,27:29:1035:27:964:-70.2191,0,-76.6054	0/1:38:26,12:26:928:12:428:-27.4197,0,-72.3991	0/1:37:19,18:19:684:18:644:-47.1525,0,-50.7522	0/1:55:19,36:19:676:36:1266:-97.682,0,-44.6113	0/1:42:22,20:22:788:20:705:-51.1295,0,-58.6015	0/1:56:31,25:31:1112:25:880:-62.6581,0,-83.5337	0/1:48:21,27:21:752:27:964:-72.6274,0,-53.5568	0/1:69:53,16:53:1904:16:576:-31.4039,0,-150.867	0/1:57:30,27:30:1072:27:968:-70.2787,0,-79.6337	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:47:24,23:24:852:23:823:-60.2446,0,-62.852	0/1:32:10,22:10:360:22:788:-61.6118,0,-23.1113	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:60:39,21:39:1404:21:756:-50.3054,0,-108.597	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	0/1:139:65,74:65:2319:74:2656:-197.443,0,-167.127	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:96:47,49:47:1692:49:1756:-129.425,0,-123.668	0/1:60:28,32:28:1004:32:1148:-85.568,0,-72.6141	0/1:24:7,17:7:239:17:593:-46.47,0,-14.618	0/1:35:15,20:15:536:20:720:-54.5927,0,-38.0388	0/1:34:17,17:17:608:17:612:-45.1784,0,-44.817	0/1:32:21,11:21:737:11:396:-26.3498,0,-57.0177	0/1:42:21,21:21:748:21:756:-55.724,0,-55.002	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:46:28,18:28:1008:18:648:-44.8045,0,-77.189	0/1:15:9,5:9:324:5:176:-11.6121,0,-24.9316	0/1:92:35,57:35:1247:57:2029:-155.184,0,-84.8393	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/1:37:9,28:9:324:28:996:-78.8168,0,-18.3677	0/1:70:30,40:30:1072:40:1436:-108.466,0,-75.7204	0/1:34:18,16:18:648:16:572:-41.5784,0,-48.4169	0/1:47:21,26:21:752:26:936:-70.3934,0,-53.8578	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:43:17,26:17:589:26:928:-70.894,0,-40.389	0/1:60:35,25:35:1251:25:892:-62.5379,0,-94.8325	0/1:60:31,29:31:1108:29:1036:-75.4921,0,-81.9692	0/1:48:37,11:37:1328:11:396:-21.5333,0,-105.373	0/1:42:21,21:21:756:21:746:-54.8213,0,-55.724	0/1:28:15,13:15:536:13:468:-34.0308,0,-40.146	0/1:69:44,25:44:1571:25:896:-60.1893,0,-120.91	0/1:28:17,11:17:612:11:395:-27.4633,0,-46.9846	0/1:66:27,39:27:955:39:1396:-106.071,0,-66.3969	0/1:63:30,33:30:1080:33:1184:-87.9034,0,-78.5484	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:79:43,36:43:1533:36:1284:-92.082,0,-114.48	0/1:54:29,25:29:1036:25:896:-64.7047,0,-77.2983	0/1:80:35,45:35:1248:45:1602:-120.362,0,-88.5425	0/1:70:35,35:35:1248:35:1233:-90.2,0,-91.5528
chr10	16714459	.	T	C	44918.7	PASS	AB=0.641631;ABP=652.551;AC=103;AF=0.547872;AN=188;AO=2529;CIGAR=1X;DP=3873;DPB=3873;DPRA=0;EPP=5494.66;EPPR=2919.3;GTI=8;LEN=1;MEANALT=1.01064;MQM=59.9605;MQMR=60;NS=94;NUMALT=1;ODDS=2.36024;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89105;QR=47705;RO=1343;RPL=2529;RPP=5494.66;RPPR=2919.3;RPR=0;RUN=1;SAF=2529;SAP=5494.66;SAR=0;SRF=1343;SRP=2919.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:3,20:3:85:20:716:-57.844,0,-1.00831	0/1:33:4,29:4:144:29:1004:-80.733,0,-3.37963	0/1:73:24,49:24:821:49:1708:-132.027,0,-52.2273	0/1:70:19,51:19:669:51:1819:-142.918,0,-39.4618	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/1:27:11,16:11:396:16:555:-42.1482,0,-27.8549	0/1:33:11,22:11:387:22:768:-59.5036,0,-25.2319	0/1:21:6,15:6:216:15:525:-41.256,0,-13.4689	0/1:26:9,17:9:320:17:612:-47.5867,0,-21.3156	0/1:47:24,23:24:851:23:815:-59.5224,0,-62.761	0/1:68:29,39:29:1023:39:1362:-102.404,0,-71.9117	0/1:46:15,31:15:540:31:1084:-84.0187,0,-35.0892	0/1:49:16,33:16:572:33:1172:-91.037,0,-37.063	1/1:34:3,31:3:108:31:1065:-86.0773,-0.15985,0	0/1:58:26,32:26:928:32:1119:-83.5571,0,-66.3785	0/1:40:19,21:19:667:21:734:-54.3392,0,-48.3134	0/1:23:15,8:15:540:8:288:-19.3437,0,-42.0128	1/1:25:2,23:2:72:23:809:-66.2916,-0.689028,0	0/1:56:15,41:15:536:41:1445:-113.487,0,-31.7171	0/1:53:20,33:20:698:33:1130:-86.0281,0,-47.1869	1/1:26:2,24:2:72:24:833:-68.4477,-0.990058,0	0/1:7:3,4:3:104:4:140:-10.8374,0,-7.5956	0/1:18:5,13:5:180:13:468:-37.0411,0,-11.1335	0/1:16:3,13:3:108:13:464:-37.281,0,-5.25869	0/1:93:23,70:23:828:70:2463:-193.926,0,-46.8483	0/1:95:36,59:36:1264:59:2097:-159.21,0,-85.4619	0/1:20:11,9:11:383:9:320:-23.1218,0,-28.7826	0/1:109:31,78:31:1104:78:2772:-216.908,0,-66.8584	0/1:50:16,34:16:576:34:1211:-94.244,0,-37.1235	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:14:3,11:3:104:11:379:-30.2261,0,-5.48839	0/1:111:37,73:37:1305:73:2520:-193.615,0,-84.3153	0/1:39:16,23:16:563:23:796:-60.2148,0,-39.259	0/1:33:10,23:10:352:23:819:-64.0976,0,-22.0842	1/1:5:0,5:0:0:5:180:-16.5292,-1.50515,0	0/1:47:16,31:16:546:31:1103:-85.4314,0,-35.3134	0/1:30:7,23:7:243:23:820:-65.0916,0,-13.1766	0/1:54:18,36:18:648:36:1277:-98.9755,0,-42.3963	0/1:36:9,27:9:324:27:953:-75.2462,0,-18.6688	0/1:38:8,30:8:288:30:1057:-83.9998,0,-14.8283	0/1:53:18,35:18:648:35:1253:-97.1195,0,-42.6973	0/1:42:22,20:22:788:20:711:-51.6724,0,-58.6015	0/1:55:10,45:10:356:45:1604:-128.094,0,-15.8246	0/1:46:20,26:20:707:26:930:-70.1709,0,-50.1072	0/1:70:26,44:26:932:44:1571:-120.609,0,-63.1268	0/1:56:14,42:14:504:42:1483:-116.906,0,-28.8404	1/1:9:0,9:0:0:9:312:-28.4154,-2.70927,0	0/1:48:10,38:10:360:38:1335:-105.997,0,-18.2949	0/1:34:12,22:12:413:22:783:-60.5579,0,-27.2628	0/1:13:2,11:2:72:11:392:-31.7067,0,-2.92333	0/1:60:22,38:22:792:38:1351:-103.828,0,-53.5439	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:26:13,13:13:464:13:468:-34.6329,0,-34.2707	0/1:133:61,72:61:2170:72:2493:-184.583,0,-155.528	0/1:7:1,6:1:36:6:208:-16.9519,0,-1.49106	0/1:96:47,49:47:1665:49:1748:-128.705,0,-121.236	0/1:59:27,32:27:968:32:1122:-83.5255,0,-69.6766	0/1:24:3,21:3:108:21:756:-61.1425,0,-2.85045	0/1:32:12,20:12:428:20:703:-53.9606,0,-29.2258	0/1:33:10,23:10:351:23:820:-64.1885,0,-21.9927	1/1:32:1,31:1:36:31:1074:-93.3667,-6.03469,0	0/1:41:20,21:20:712:21:752:-55.664,0,-52.0644	0/1:24:13,11:13:468:11:388:-28.0326,0,-35.2349	0/1:42:13,29:13:464:29:1021:-79.557,0,-29.4542	0/1:13:5,8:5:180:8:273:-20.9868,0,-12.6387	0/1:86:33,53:33:1152:53:1839:-139.898,0,-78.0948	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/1:35:8,27:8:284:27:948:-75.0986,0,-15.3673	0/1:67:29,38:29:1025:38:1336:-100.368,0,-72.3917	0/1:35:7,28:7:252:28:994:-79.2383,0,-12.4929	0/1:44:18,26:18:648:26:904:-68.4089,0,-45.4066	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:39:16,23:16:563:23:796:-60.2154,0,-39.259	0/1:56:19,37:19:675:37:1319:-102.153,0,-44.2193	0/1:57:13,44:13:464:44:1538:-121.549,0,-24.9388	0/1:48:18,30:18:635:30:1052:-80.5383,0,-43.0275	0/1:42:12,30:12:423:30:1040:-81.2641,0,-25.7618	0/1:28:8,20:8:284:20:692:-54.1698,0,-17.4745	0/1:69:27,42:27:972:42:1472:-112.001,0,-67.0268	0/1:26:15,11:15:540:11:381:-26.7939,0,-41.1098	0/1:65:28,37:28:977:37:1312:-98.8147,0,-68.6734	0/1:64:31,33:31:1108:33:1175:-86.791,0,-80.7651	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:77:19,58:19:676:58:2034:-160.15,0,-37.9887	0/1:55:13,42:13:468:42:1485:-117.387,0,-25.903	0/1:78:37,41:37:1324:41:1450:-107.314,0,-95.9818	0/1:66:32,34:32:1148:34:1197:-88.1654,0,-83.7619
chr10	16714596	.	G	T	38335.9	PASS	AB=0.448098;ABP=129.69;AC=90;AF=0.478723;AN=188;AO=2431;CIGAR=1X;DP=5440;DPB=5440;DPRA=26.8198;EPP=5273.18;EPPR=6526.11;GTI=3;LEN=1;MEANALT=1.04444;MQM=49.0469;MQMR=59.8049;NS=94;NUMALT=1;ODDS=1.1014;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86942;QR=105723;RO=3004;RPL=1;RPP=5273.18;RPPR=6526.11;RPR=2430;RUN=1;SAF=0;SAP=5281.86;SAR=2431;SRF=0;SRP=6526.11;SRR=3004;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:6,6:6:216:6:216:-16.0709,0,-16.1782	0/1:78:39,39:39:1392:39:1400:-101.297,0,-102.054	0/1:51:31,20:31:1081:20:712:-48.1787,0,-82.2438	0/1:66:35,31:35:1230:31:1108:-79.4966,0,-91.1345	0/1:20:10,10:10:356:10:356:-26.2265,0,-26.3606	0/1:35:12,23:12:432:23:828:-63.7901,0,-28.6851	0/1:87:49,38:49:1696:38:1364:-96.3278,0,-126.733	0/1:68:35,33:35:1256:33:1176:-84.7785,0,-92.8752	0/1:45:20,25:20:716:25:888:-65.7445,0,-51.2214	0/1:65:46,19:46:1613:19:684:-42.0615,0,-125.887	0/1:76:30,46:30:1041:46:1644:-124.215,0,-71.0907	0/1:79:41,38:41:1422:38:1352:-96.8254,0,-104.488	0/1:43:31,12:31:1107:12:432:-26.0643,0,-86.9509	0/1:87:58,29:58:2028:29:1040:-66.8815,0,-156.598	0/1:43:22,21:22:775:21:752:-54.768,0,-57.1269	0/1:49:25,24:25:848:24:864:-62.8341,0,-61.8789	0/1:135:61,74:61:2147:74:2637:-194.235,0,-152.859	0/1:60:26,34:26:936:34:1220:-91.1518,0,-66.4977	0/1:35:26,9:26:912:9:324:-18.8098,0,-71.854	0/1:27:15,12:15:528:12:432:-30.9274,0,-39.7236	0/1:81:35,46:35:1224:46:1648:-123.346,0,-86.071	0/1:52:33,19:33:1172:19:684:-45.9602,0,-90.1339	0/1:14:4,10:4:140:10:360:-28.4098,0,-8.73016	0/1:60:39,21:39:1367:21:752:-49.4026,0,-105.266	0/1:20:13,7:13:456:7:252:-16.6197,0,-35.3526	0/1:155:96,59:96:3397:59:2116:-142.617,0,-259.189	0/1:105:43,61:43:1548:61:2168:-162.367,0,-107.948	0/1:31:12,19:12:424:19:684:-50.9445,0,-29.1645	0/1:89:67,22:67:2372:22:784:-43.5488,0,-186.713	0/1:100:53,47:53:1879:47:1684:-119.486,0,-139.281	0/1:65:40,25:40:1420:25:879:-59.471,0,-108.53	0/1:6:2,4:2:72:4:144:-11.4511,0,-5.03012	0/1:7:4,3:4:144:3:108:-7.92533,0,-11.2064	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:144:-13.2454,-1.20412,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:146:87,59:87:3035:59:2116:-145.73,0,-229.429	0/1:106:52,54:52:1839:54:1936:-141.07,0,-133.881	0/1:50:31,19:31:1095:19:680:-46.1374,0,-83.8072	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:46:28,18:28:985:18:644:-43.5125,0,-75.1141	0/1:30:18,12:18:620:12:424:-28.8544,0,-47.0846	0/1:47:23,24:23:794:24:860:-63.0043,0,-57.6228	0/1:43:25,18:25:866:18:648:-45.2022,0,-65.3096	0/1:48:32,16:32:1123:16:576:-37.0841,0,-86.8414	0/1:44:19,25:19:676:25:896:-66.822,0,-47.9227	0/1:45:23,22:23:803:22:788:-57.3207,0,-59.042	0/1:90:53,37:53:1896:37:1308:-90.1379,0,-143.823	0/1:68:21,46:21:748:46:1643:-125.665,0,-47.1177	0/1:67:36,31:36:1269:31:1108:-78.5859,0,-94.3417	0/1:84:44,40:44:1551:40:1440:-103.819,0,-114.594	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:66:39,27:39:1358:27:968:-66.5728,0,-102.634	0/1:19:5,14:5:180:14:492:-38.6633,0,-10.8325	0/0:13:10,1:10:337:1:36:0,-0.09109,-27.0773	0/1:53:32,21:32:1128:21:756:-52.1156,0,-85.8691	0/1:9:7,2:7:252:2:72:-4.09852,0,-20.3197	0/1:6:3,3:3:108:3:104:-7.86248,0,-8.26899	0/1:14:3,11:3:108:11:392:-31.2616,0,-5.86075	0/1:69:25,44:25:892:44:1572:-118.43,0,-59.8286	0/1:179:85,94:85:2968:94:3368:-245.311,0,-213.47	0/1:2:1,1:1:36:1:32:-2.59112,0,-2.99621	0/1:159:79,80:79:2820:80:2872:-208.792,0,-206.176	0/1:142:68,74:68:2407:74:2652:-195.129,0,-174.141	0/1:38:25,13:25:896:13:468:-30.6634,0,-69.5212	0/1:41:21,20:21:748:20:720:-51.9659,0,-55.3007	0/1:42:30,11:30:1063:11:396:-23.1249,0,-83.2792	0/1:55:44,11:44:1556:11:396:-19.27,0,-123.738	0/1:40:24,16:24:824:16:563:-38.7497,0,-62.4313	0/1:58:28,30:28:955:30:1076:-79.1827,0,-68.7966	0/1:95:68,27:68:2414:27:960:-57.5149,0,-188.491	0/1:6:1,5:1:32:5:172:-13.9585,0,-1.39313	0/1:75:37,38:37:1299:38:1360:-97.8254,0,-94.5965	0/1:45:34,11:34:1224:11:381:-20.5384,0,-96.8749	0/1:77:31,46:31:1083:46:1644:-123.845,0,-74.4689	0/1:122:59,63:59:2083:63:2264:-165.668,0,-151.011	0/1:51:29,22:29:1022:22:784:-54.8688,0,-76.9383	0/1:76:32,44:32:1136:44:1568:-117.459,0,-79.5843	0/1:12:7,5:7:252:5:180:-12.85,0,-19.4166	0/1:75:42,33:42:1479:33:1179:-83.2978,0,-110.826	0/1:45:20,25:20:707:25:888:-66.2949,0,-50.4082	0/1:63:43,20:43:1519:20:716:-44.4409,0,-118.02	0/1:103:69,34:69:2392:34:1224:-78.38,0,-184.021	0/1:47:38,9:38:1329:9:324:-15.2326,0,-105.703	0/1:39:28,11:28:971:11:396:-24.0608,0,-75.9563	0/1:95:62,33:62:2162:33:1171:-75.6759,0,-166.242	0/1:43:17,26:17:599:26:924:-70.108,0,-41.2929	0/1:90:46,44:46:1602:44:1576:-114.327,0,-117.355	0/1:57:29,28:29:1019:28:1000:-72.6886,0,-74.8626	0/1:33:15,18:15:540:18:648:-48.2125,0,-39.001	0/1:100:71,29:71:2473:29:1036:-62.824,0,-192.483	0/1:55:46,9:46:1610:9:320:-12.4543,0,-128.626	0/1:77:44,33:44:1542:33:1173:-82.252,0,-115.891	0/1:81:47,34:47:1631:34:1216:-84.5633,0,-122.691
chr10	16714621	.	C	T	37936.4	PASS	AB=0.45044;ABP=116.87;AC=90;AF=0.478723;AN=188;AO=2409;CIGAR=1X;DP=5363;DPB=5363;DPRA=26.4395;EPP=5234.09;EPPR=6413.2;GTI=3;LEN=1;MEANALT=1.02222;MQM=49.0643;MQMR=59.8442;NS=94;NUMALT=1;ODDS=0.846296;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86036;QR=104981;RO=2952;RPL=2409;RPP=5234.09;RPPR=6413.2;RPR=0;RUN=1;SAF=0;SAP=5234.09;SAR=2409;SRF=0;SRP=6413.2;SRR=2952;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:6,7:6:216:7:252:-18.9946,0,-15.8771	0/1:76:38,38:38:1360:38:1368:-99.2807,0,-99.7774	0/1:51:30,21:30:1076:21:752:-51.7504,0,-81.8003	0/1:64:34,30:34:1205:30:1064:-76.1694,0,-89.488	0/1:20:10,10:10:360:10:360:-26.5813,0,-26.7237	0/1:35:12,23:12:428:23:828:-63.7901,0,-28.3228	0/1:85:47,38:47:1688:38:1330:-93.9224,0,-126.619	0/1:65:34,31:34:1212:31:1112:-80.2925,0,-89.8194	0/1:43:19,24:19:676:24:864:-64.4336,0,-48.2237	0/1:64:45,19:45:1608:19:680:-42.0096,0,-125.736	0/1:77:31,46:31:1103:46:1648:-124.265,0,-76.3721	0/1:78:40,38:40:1424:38:1363:-98.1152,0,-104.941	0/1:42:30,12:30:1055:12:432:-26.3653,0,-82.5718	0/1:86:57,29:57:2019:29:1044:-67.5348,0,-156.093	0/1:43:22,21:22:788:21:756:-55.1207,0,-58.3005	0/1:51:24,27:24:852:27:964:-70.7833,0,-61.6479	0/1:135:61,74:61:2180:74:2631:-194.118,0,-155.827	0/1:61:26,35:26:932:35:1260:-94.4214,0,-65.836	0/1:35:25,10:25:883:10:360:-22.0032,0,-69.2514	0/1:27:15,12:15:540:12:432:-30.9274,0,-40.8087	0/1:81:36,45:36:1271:45:1608:-119.9,0,-90.3022	0/1:51:31,19:31:1108:19:684:-46.2025,0,-84.6197	0/1:14:4,10:4:144:10:356:-27.9288,0,-9.0992	0/1:59:38,21:38:1356:21:752:-49.7036,0,-104.58	0/1:20:12,8:12:424:8:288:-19.845,0,-32.4758	0/1:151:95,56:95:3400:56:2012:-134.61,0,-260.753	0/1:105:43,62:43:1536:62:2220:-167.053,0,-106.925	0/1:30:12,18:12:423:18:644:-48.7626,0,-29.3742	0/1:85:63,22:63:2256:22:773:-44.0002,0,-177.416	0/1:97:50,47:50:1788:47:1668:-118.984,0,-132.003	0/1:64:37,27:37:1320:27:968:-67.7213,0,-99.836	0/1:6:2,4:2:72:4:144:-11.4511,0,-5.03012	0/1:7:4,3:4:144:3:108:-7.92533,0,-11.2064	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:144:-13.2454,-1.20412,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:143:86,57:86:3039:57:2040:-139.83,0,-230.694	0/1:105:52,53:52:1849:53:1904:-138.482,0,-135.08	0/1:50:31,19:31:1112:19:680:-46.1374,0,-85.3389	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:44:26,18:26:921:18:648:-44.4677,0,-69.9599	0/1:29:17,12:17:595:12:432:-29.598,0,-45.1422	0/1:47:24,23:24:847:23:820:-59.5446,0,-62.3985	0/1:43:25,18:25:900:18:647:-45.1544,0,-68.3767	0/1:45:30,15:30:1063:15:536:-34.3949,0,-82.3458	0/1:44:20,24:20:716:24:821:-60.3241,0,-51.5224	0/1:44:23,21:23:816:21:752:-54.0999,0,-60.5164	0/1:91:53,38:53:1900:38:1364:-94.622,0,-143.882	0/1:71:22,49:22:784:49:1748:-134.377,0,-49.5104	0/1:67:36,31:36:1280:31:1093:-77.3772,0,-95.3342	0/1:84:45,39:45:1612:39:1404:-100.594,0,-120.084	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:63:38,25:38:1324:25:877:-59.7378,0,-100.264	0/1:19:5,14:5:176:14:504:-39.5275,0,-10.4654	0/0:13:12,1:12:417:1:36:0,-0.334623,-34.2454	0/1:52:31,21:31:1104:21:748:-51.7112,0,-84.0152	0/1:9:7,2:7:243:2:72:-4.09852,0,-19.4982	0/1:6:3,3:3:108:3:108:-8.22636,0,-8.26899	0/1:14:3,11:3:108:11:396:-31.6161,0,-5.86075	0/1:70:25,45:25:888:45:1599:-120.652,0,-59.1669	0/1:170:79,91:79:2811:91:3251:-237.993,0,-202.055	0/1:2:1,1:1:36:1:36:-2.98099,0,-2.99621	0/1:156:78,77:78:2757:77:2764:-200.319,0,-201.352	0/1:143:67,76:67:2384:76:2701:-199.237,0,-171.771	0/1:39:25,14:25:892:14:500:-33.2336,0,-68.8595	0/1:40:20,20:20:712:20:693:-50.2487,0,-52.3631	0/1:40:30,10:30:1064:10:360:-20.5607,0,-84.0281	0/1:55:43,12:43:1544:12:424:-21.7887,0,-122.61	0/1:39:24,15:24:847:15:525:-35.6403,0,-64.8086	0/1:58:28,30:28:1000:30:1080:-79.5326,0,-72.8556	0/1:94:66,28:66:2360:28:990:-60.6948,0,-183.991	0/1:6:1,5:1:36:5:180:-14.6758,0,-1.79209	0/1:76:38,38:38:1337:38:1364:-98.1742,0,-97.7476	0/1:45:34,11:34:1224:11:393:-21.3222,0,-96.8749	0/1:75:30,45:30:1068:45:1608:-121.401,0,-73.8533	0/1:117:58,59:58:2060:59:2105:-153.428,0,-150.448	0/1:49:29,20:29:1036:20:716:-49.3775,0,-78.8034	0/1:75:32,43:32:1139:43:1529:-114.396,0,-80.1548	0/1:11:7,4:7:248:4:144:-9.93011,0,-19.3529	0/1:77:44,33:44:1572:33:1188:-83.3206,0,-118.592	0/1:43:19,24:19:680:24:860:-64.3831,0,-48.5849	0/1:63:42,21:42:1485:21:741:-46.6764,0,-114.976	0/1:99:65,34:65:2310:34:1224:-79.5842,0,-178.351	0/1:46:37,9:37:1307:9:316:-14.8232,0,-104.026	0/1:37:27,10:27:938:10:356:-21.0833,0,-73.5937	0/1:93:62,31:62:2187:31:1112:-70.9366,0,-169.096	0/1:40:16,24:16:576:24:864:-65.618,0,-40.0887	0/1:89:45,44:45:1600:44:1584:-115.327,0,-117.491	0/1:56:28,28:28:986:28:1008:-73.6896,0,-72.1945	0/1:33:15,18:15:536:18:640:-47.5064,0,-38.6393	0/1:101:71,30:71:2531:30:1061:-64.9923,0,-197.147	0/1:51:43,8:43:1497:8:280:-10.0922,0,-119.666	0/1:78:45,33:45:1608:33:1161:-80.897,0,-121.525	0/1:80:47,33:47:1640:33:1180:-81.7707,0,-123.803
chr10	17032297	.	C	T	32721.2	PASS	AB=0.541822;ABP=55.8653;AC=53;AF=0.284946;AN=186;AO=1918;CIGAR=1X;DP=6320;DPB=6320;DPRA=1.29305;EPP=4159.21;EPPR=9550.98;GTI=0;LEN=1;MEANALT=1;MQM=59.537;MQMR=59.95;NS=93;NUMALT=1;ODDS=1.87893;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68607;QR=156976;RO=4401;RPL=1917;RPP=4159.21;RPPR=9550.98;RPR=1;RUN=1;SAF=1918;SAP=4167.89;SAR=0;SRF=4401;SRP=9559.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:29,21:29:1021:21:752:-52.9148,0,-77.1488	0/0:114:110,4:110:3921:4:144:0,-21.0038,-339.769	0/0:81:81,0:81:2887:0:0:0,-24.3834,-260.067	0/1:87:39,48:39:1391:48:1728:-129.611,0,-99.294	0/1:77:36,41:36:1296:41:1459:-108.394,0,-93.7646	0/1:58:22,36:22:788:36:1284:-98.3951,0,-53.7851	0/1:136:59,77:59:2124:77:2764:-208.048,0,-150.488	0/0:70:68,2:68:2404:2:72:0,-14.2354,-209.778	0/1:104:50,54:50:1796:54:1936:-143.174,0,-130.579	0/1:73:27,46:27:959:46:1616:-123.419,0,-64.6502	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.529	0/1:53:23,30:23:824:30:1067:-80.369,0,-58.4414	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:32:22,10:22:777:10:360:-23.0975,0,-60.6171	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.988	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:33:20,13:20:720:13:464:-32.1544,0,-55.1948	0/1:145:63,82:63:2251:82:2932:-220.23,0,-159.203	0/1:127:61,66:61:2179:66:2363:-174.683,0,-158.116	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:84:42,42:42:1508:42:1500:-110.008,0,-110.728	0/0:35:32,3:32:1144:3:108:0,-0.46088,-93.1943	0/1:94:54,40:54:1921:40:1428:-100.494,0,-144.868	0/0:166:166,0:166:5930:0:0:0,-49.971,-533.793	0/1:197:90,107:90:3228:107:3839:-286.388,0,-231.439	0/1:25:16,9:16:576:9:320:-21.6166,0,-44.6492	0/0:93:92,0:92:3274:0:0:0,-27.6948,-294.518	0/1:72:38,34:38:1356:34:1220:-88.4245,0,-100.666	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.752	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:9:5,4:5:180:4:135:-9.76487,0,-13.8428	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:180:180,0:180:6447:0:0:0,-54.1854,-580.315	0/1:86:30,56:30:1080:56:1997:-153.955,0,-71.6247	0/1:34:16,18:16:576:18:635:-47.2409,0,-41.94	.:.:.:.:.:.:.:.	0/0:86:86,0:86:3058:0:0:0,-25.8886,-275.449	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.2344	0/1:149:68,81:68:2410:81:2893:-215.723,0,-172.303	0/1:53:25,28:25:900:28:1000:-74.3608,0,-65.3664	0/0:54:54,0:54:1877:0:0:0,-16.2556,-169.204	0/1:120:65,55:65:2314:55:1953:-139.915,0,-172.396	0/0:98:95,3:95:3416:3:108:0,-19.4258,-297.569	0/0:115:115,0:115:4098:0:0:0,-34.6184,-369.006	0/1:103:45,58:45:1611:58:2088:-157.17,0,-114.273	0/1:60:21,39:21:752:39:1400:-108.219,0,-49.9445	0/1:144:53,91:53:1900:91:3254:-249.729,0,-127.93	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:105:50,55:50:1780:55:1962:-145.188,0,-128.863	0/1:53:10,43:10:360:43:1525:-121.533,0,-16.7897	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:92:91,1:91:3218:1:36:0,-24.0965,-286.243	0/1:71:35,36:35:1252:36:1284:-93.6699,0,-91.6119	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	0/1:53:23,30:23:824:30:1080:-81.5367,0,-58.5287	0/0:56:56,0:56:1997:0:0:0,-16.8577,-180.002	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:94:34,60:34:1220:60:2147:-165.196,0,-81.81	0/0:129:124,5:124:4425:5:180:0,-22.2808,-381.869	0/1:44:24,20:24:852:20:712:-51.1531,0,-63.7551	0/0:41:41,0:41:1428:0:0:0,-12.3422,-128.794	0/1:119:47,72:47:1660:72:2588:-197.33,0,-113.862	0/0:81:79,2:79:2804:2:72:0,-17.5467,-245.756	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5371	0/1:69:34,35:34:1205:35:1256:-92.5366,0,-87.9828	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.335	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:120:120,0:120:4263:0:0:0,-36.1236,-383.848	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.191	0/1:83:40,43:40:1436:43:1544:-114.25,0,-104.552	0/1:72:32,40:32:1122:40:1436:-107.84,0,-79.6121	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:35:15,20:15:536:20:720:-54.5764,0,-38.0388	0/1:47:20,27:20:712:27:972:-73.6495,0,-50.2582	0/0:233:232,1:232:8267:1:36:0,-66.5468,-740.439	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:110:43,67:43:1535:67:2408:-183.842,0,-105.329	0/1:42:27,15:27:963:15:536:-35.9316,0,-74.3427	0/1:49:28,21:28:1000:21:747:-52.7941,0,-75.5402	0/1:61:33,28:33:1169:28:1000:-70.9874,0,-87.1525	0/1:17:9,8:9:324:8:288:-21.137,0,-24.3883	0/1:53:36,17:36:1246:17:612:-39.4588,0,-96.4829	0/1:55:16,39:16:572:39:1387:-108.561,0,-35.2568	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/0:92:91,1:91:3240:1:36:0,-24.0965,-288.221
chr10	17085094	.	A	T	20378.5	PASS	AB=0.496552;ABP=3.26489;AC=51;AF=0.274194;AN=186;AO=1247;CIGAR=1X;DP=4952;DPB=4952;DPRA=0.988025;EPP=2710.84;EPPR=8048.32;GTI=2;LEN=1;MEANALT=1;MQM=60;MQMR=59.9825;NS=93;NUMALT=1;ODDS=0.848186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44662;QR=132707;RO=3705;RPL=0;RPP=2710.84;RPPR=8048.32;RPR=1247;RUN=1;SAF=1247;SAP=2710.84;SAR=0;SRF=3705;SRP=8048.32;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:13,13:13:460:13:464:-34.2707,0,-33.9086	0/0:46:43,3:43:1540:3:108:0,-3.77221,-128.818	0/0:81:80,1:80:2876:1:36:0,-20.7852,-255.478	0/1:137:81,56:81:2900:56:2004:-139.392,0,-219.995	0/1:34:20,14:20:720:14:504:-35.4631,0,-54.8938	0/1:16:10,6:10:356:6:212:-14.6083,0,-27.5648	0/1:62:31,31:31:1093:31:1112:-81.7275,0,-80.0138	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:49:19,30:19:665:30:1068:-81.6816,0,-45.4223	0/1:44:18,26:18:648:26:932:-70.9535,0,-45.4066	0/0:62:61,1:61:2188:1:36:0,-15.0656,-193.587	0/1:50:26,24:26:936:24:860:-62.6703,0,-69.508	0/0:48:46,2:46:1641:2:72:0,-7.61272,-141.14	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:41:40,1:40:1421:1:36:0,-8.74395,-124.587	0/1:38:20,18:20:716:18:648:-47.2127,0,-53.3286	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:102:55,47:55:1935:47:1684:-121.142,0,-143.716	0/1:121:38,83:38:1364:83:2961:-230.297,0,-86.6361	0/0:44:43,1:43:1529:1:36:0,-9.64704,-134.303	0/1:41:8,33:8:288:33:1180:-94.1658,0,-13.9252	0/0:43:41,2:41:1468:2:72:0,-6.10757,-125.579	0/1:31:17,14:17:612:14:504:-36.3662,0,-46.0815	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/1:97:54,43:54:1936:43:1533:-109.061,0,-145.316	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	0/0:116:116,0:116:4168:0:0:0,-34.9195,-375.301	0/1:43:18,25:18:629:25:900:-68.3767,0,-43.9895	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:18:12,6:12:423:6:216:-14.372,0,-32.9865	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:152:151,1:151:5413:1:36:0,-42.1583,-483.699	0/1:77:37,40:37:1316:40:1436:-106.358,0,-95.5625	0/1:46:29,17:29:1040:17:608:-41.2046,0,-80.067	.:.:.:.:.:.:.:.	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:42:41,1:41:1457:1:36:0,-9.04498,-127.826	0/1:66:31,35:31:1108:35:1248:-92.7569,0,-80.163	0/1:23:10,13:10:360:13:464:-35.1738,0,-25.8206	0/0:44:44,0:44:1569:0:0:0,-13.2453,-141.5	0/1:45:36,9:36:1280:9:320:-15.596,0,-101.957	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:102:101,1:101:3632:1:36:0,-27.1068,-323.399	0/1:49:25,24:25:888:24:848:-61.8892,0,-64.7852	0/1:62:40,22:40:1436:22:792:-52.9418,0,-110.874	0/1:79:28,51:28:1000:51:1828:-141.02,0,-66.534	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:69:31,38:31:1116:38:1368:-102.65,0,-79.9806	0/1:30:12,18:12:432:18:648:-49.621,0,-30.1903	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:62:62,0:62:2217:0:0:0,-18.6639,-199.793	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:46:21,25:21:752:25:896:-67.113,0,-54.1589	0/0:143:142,1:142:5100:1:36:0,-39.449,-455.541	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:67:34,33:34:1216:33:1180:-86.339,0,-89.5776	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/1:36:16,20:16:572:20:720:-54.2917,0,-40.9763	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:79:37,42:37:1332:42:1500:-111.513,0,-96.401	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:55:26,29:26:924:29:1036:-76.9973,0,-66.921	0/0:60:59,1:59:2124:1:36:0,-14.4635,-187.83	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:62:40,22:40:1440:22:784:-52.2201,0,-111.234	0/1:55:22,33:22:777:33:1180:-89.9514,0,-53.6935	0/1:17:7,10:7:248:10:360:-27.6268,0,-17.5467	0/1:52:34,18:34:1224:18:644:-42.637,0,-94.8135	0/1:46:15,31:15:540:31:1116:-86.9043,0,-35.0892	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:63:61,2:61:2196:2:68:0,-12.5072,-191.447	0/0:51:48,3:48:1716:3:108:0,-5.27736,-144.65	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:78:34,44:34:1224:44:1572:-118.291,0,-86.9867	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:57:34,23:34:1216:23:824:-57.3246,0,-92.5879	0/1:69:29,40:29:1040:40:1440:-109.127,0,-73.1433	0/1:33:22,11:22:792:11:396:-26.0488,0,-61.6717	0/1:95:71,24:71:2522:24:864:-49.4847,0,-198.631	0/1:49:20,29:20:720:29:1040:-79.1639,0,-50.3783	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:59:57,2:57:2052:2:72:0,-10.924,-178.115
chr10	17402082	.	C	T	15645.5	PASS	AB=0.300623;ABP=1498.39;AC=54;AF=0.287234;AN=188;AO=1316;CIGAR=1X;DP=8017;DPB=8017;DPRA=1.11752;EPP=2860.67;EPPR=14484.6;GTI=10;LEN=1;MEANALT=1;MQM=59.9369;MQMR=59.7269;NS=94;NUMALT=1;ODDS=0.665104;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47007;QR=239240;RO=6701;RPL=0;RPP=2860.67;RPPR=14519.3;RPR=1316;RUN=1;SAF=1316;SAP=2860.67;SAR=0;SRF=6697;SRP=14519.3;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:89:89,0:89:3188:0:0:0,-26.7917,-286.516	0/0:131:131,0:131:4669:0:0:0,-39.4349,-418.58	0/0:101:101,0:101:3587:0:0:0,-30.404,-322.549	0/1:49:30,19:30:1076:19:680:-46.7705,0,-82.4024	0/1:34:26,8:26:936:8:288:-16.0324,0,-74.3244	0/1:70:47,23:47:1684:23:820:-53.022,0,-130.767	0/1:124:90,34:90:3215:34:1220:-72.7791,0,-252.245	0/1:79:55,24:55:1949:24:842:-52.3151,0,-151.903	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:94:68,26:68:2436:26:932:-55.902,0,-190.008	0/0:143:143,0:143:5112:0:0:0,-43.0473,-460.221	0/0:152:152,0:152:5442:0:0:0,-45.7566,-488.035	0/1:260:220,40:220:7777:40:1425:-50.2777,0,-616.346	0/1:95:69,26:69:2476:26:936:-55.9616,0,-194.495	0/1:56:38,18:38:1356:18:648:-41.7927,0,-104.705	0/1:66:49,17:49:1734:17:612:-35.5455,0,-134.6	0/1:61:51,10:51:1819:10:360:-14.3815,0,-145.628	0/0:66:66,0:66:2331:0:0:0,-19.868,-210.048	0/1:78:48,30:48:1708:30:1080:-74.0329,0,-130.525	0/0:131:131,0:131:4688:0:0:0,-39.4349,-422.081	0/1:33:21,12:21:748:12:422:-28.3691,0,-57.7113	0/1:227:145,82:145:5192:82:2914:-194.159,0,-396.834	0/1:31:21,10:21:756:10:360:-23.4124,0,-58.0947	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:173:116,57:116:4148:57:2048:-132.513,0,-321.426	0/1:126:88,38:88:3156:38:1352:-84.0506,0,-246.333	0/1:39:19,20:19:684:20:720:-53.3886,0,-50.1502	0/1:160:126,34:126:4508:34:1212:-61.2215,0,-357.724	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:207:168,39:168:6016:39:1400:-63.9814,0,-478.531	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:8:6,2:6:208:2:72:-4.42848,0,-15.6979	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:320:238,82:238:8506:82:2944:-168.862,0,-666.083	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:74:47,27:47:1684:27:972:-65.5217,0,-128.207	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:108:105,3:105:3747:3:108:0,-22.4361,-327.355	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.679	0/1:121:75,46:75:2675:46:1638:-111.282,0,-204.57	0/1:139:92,47:92:3291:47:1684:-110.004,0,-254.566	0/1:78:62,16:62:2199:16:572:-28.3331,0,-174.138	0/0:81:81,0:81:2888:0:0:0,-24.3834,-260.157	0/1:76:52,24:52:1872:24:864:-55.2043,0,-145.881	0/0:114:114,0:114:4071:0:0:0,-34.3174,-366.577	0/0:48:48,0:48:1724:0:0:0,-14.4494,-153.101	0/1:68:41,27:41:1468:27:972:-67.3279,0,-111.946	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9778	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:68:68,0:68:2436:0:0:0,-20.47,-217.511	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:109:109,0:109:3869:0:0:0,-32.8123,-348.406	0/1:37:30,7:30:1072:7:248:-11.5261,0,-85.6543	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:90:57,33:57:2036:33:1170:-78.5116,0,-155.719	0/1:145:105,40:105:3734:40:1436:-85.8883,0,-291.978	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:71:48,23:48:1708:23:824:-53.1102,0,-132.633	0/0:151:149,2:149:5301:2:72:0,-38.6188,-470.39	0/1:65:42,23:42:1491:23:805:-53.2006,0,-114.917	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:122:81,41:81:2887:41:1427:-91.994,0,-223.341	0/0:114:114,0:114:4068:0:0:0,-34.3174,-366.308	0/0:71:71,0:71:2506:0:0:0,-21.3731,-224.154	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:84:67,17:67:2382:17:612:-30.1269,0,-188.149	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/0:79:78,1:78:2784:1:36:0,-20.1831,-247.203	0/1:82:53,29:53:1896:29:1044:-69.5903,0,-146.231	0/0:261:260,1:260:9241:1:36:0,-74.9706,-822.135	0/0:127:126,1:126:4532:1:36:0,-34.6325,-404.447	0/1:78:44,34:44:1564:34:1209:-85.6323,0,-117.571	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.71	0/1:8:5,3:5:171:3:108:-7.66693,0,-13.3172	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.597	0/1:53:31,22:31:1108:22:777:-54.2958,0,-84.0764	0/0:159:159,0:159:5695:0:0:0,-47.8638,-512.667	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.351	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:91:74,17:74:2621:17:612:-28.0197,0,-208.743	0/0:175:174,1:174:6191:1:36:0,-49.082,-552.764	0/1:34:22,12:22:788:12:432:-28.9862,0,-61.0098	0/1:79:55,24:55:1959:24:864:-54.3012,0,-152.803	0/0:89:89,0:89:3196:0:0:0,-26.7917,-285.133	0/1:50:34,16:34:1216:16:576:-37.1235,0,-94.6951	0/1:93:57,36:57:2040:36:1250:-84.7975,0,-154.665	0/1:133:75,58:75:2676:58:2076:-147.073,0,-198.884	0/0:118:118,0:118:4192:0:0:0,-35.5215,-377.465	0/0:197:197,0:197:7068:0:0:0,-59.3029,-636.178
chr10	17402092	.	GC	GT,TT	139459	PASS	AB=0.418723,0.209656;ABP=814.514,7616.62;AC=75,34;AF=0.398936,0.180851;AN=188;AO=5922,2187;CIGAR=1M1X,2X;DP=14155;DPB=14156;DPRA=21.9612,0;EPP=234.178,246.296;EPPR=169.009;GTI=6;LEN=1,2;MEANALT=1.83696,2.12121;MQM=59.9811,59.9442;MQMR=59.6147;NS=94;NUMALT=2;ODDS=3.45256;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=0;PRO=0;QA=208592,75293;QR=208960;RO=6031;RPL=11,3;RPP=12767.1,4726;RPPR=12977.8;RPR=5911,2184;RUN=1,1;SAF=3367,1344;SAP=244.778,252.229;SAR=2555,843;SRF=3369;SRP=182.982;SRR=2662;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:90:22,68,0:22:749:68,0:2388,0:-188.082,0,-40.6312,-194.704,-61.1013,-255.463	0/1:204:101,102,0:101:3532:102,0:3560,0:-259.231,0,-255.772,-289.635,-286.477,-576.035	0/1:239:125,114,0:125:4393:114,0:3969,0:-285.459,0,-321.796,-323.088,-356.113,-678.852	0/1:191:53,137,0:53:1859:137,0:4820,0:-375.914,0,-110.031,-391.869,-151.272,-543.15	1/2:88:23,30,35:23:819:30,35:1053,1224:-111.59,-32.8167,-90.5408,-18.9393,0,-75.1579	0/1:61:28,24,9:28:977:24,9:848,309:-60.6383,0,-72.2418,-43.9806,-54.3786,-120.731	0/1:123:41,46,36:41:1452:46,36:1623,1215:-119.825,0,-104.435,-33.7335,-19.8498,-141.17	0/1:179:102,41,36:102:3533:41,36:1432,1287:-85.7722,0,-274.778,-11.5342,-182.178,-287.823	0/1:140:64,50,26:64:2170:50,26:1763,896:-124.288,0,-160.898,-70.7786,-103.169,-238.897	0/1:97:28,69,0:28:971:69,0:2392,0:-186.338,0,-58.4844,-194.767,-79.2554,-273.676	0/2:169:84,32,53:84:2936:32,53:1123,1788:-119.608,-53.4961,-281.171,0,-145.904,-221.344	0/1:221:80,140,1:80:2723:140,1:4968,25:-380.795,0,-178.833,-402.929,-219.029,-623.511	0/1:250:117,132,1:117:4023:132,1:4702,23:-348.147,0,-285.191,-381.599,-323.159,-706.108	0/1:377:187,119,70:187:6419:119,70:4182,2413:-284.103,0,-480.342,-144.392,-320.157,-639.481	0/1:214:108,59,46:108:3761:59,46:2103,1530:-138.922,0,-288.081,-47.6451,-182.048,-339.624	1/2:137:42,44,50:42:1474:44,50:1536,1676:-128.829,-16.5296,-122.474,-5.75213,0,-109.885	0/1:142:87,38,17:87:2986:38,17:1317,610:-80.8435,0,-229.112,-57.2726,-190.791,-292.717	0/1:117:80,27,10:80:2778:27,10:938,360:-52.1652,0,-217.689,-46.87,-196.441,-269.688	0/1:104:35,69,0:35:1189:69,0:2428,0:-187.469,0,-75.9917,-198.005,-96.7628,-294.424	0/1:183:60,64,59:60:2045:64,59:2241,2036:-164.275,0,-146.645,-16.94,-0.509621,-165.088	0/1:195:70,125,0:70:2421:125,0:4417,0:-339.005,0,-159.443,-360.078,-197.072,-556.801	0/2:68:32,12,24:32:1090:12,24:428,830:-57.8007,-32.5401,-117.351,0,-53.5205,-81.1901	0/2:273:115,60,98:115:4060:60,98:2129,3345:-236.793,-97.9463,-409.405,0,-156.051,-300.012	0/2:123:54,26,43:54:1882:26,43:928,1465:-102.586,-43.1803,-187.781,0,-76.7597,-139.473	0/1:104:34,70,0:34:1191:70,0:2473,0:-191.517,0,-76.1855,-201.752,-97.2576,-298.658	0/2:318:131,86,101:131:4559:86,101:2990,3495:-244.576,-40.9151,-385.725,0,-127.603,-340.294	1/2:197:63,69,65:63:2206:69,65:2418,2239:-180.166,-2.37478,-161.084,-17.2757,0,-177.186	0/2:85:29,25,31:29:1011:25,31:879,1094:-80.355,-17.5359,-92.218,0,-10.6574,-72.8765	0/1:323:174,78,70:174:5984:78,70:2780,2425:-174.23,0,-462.473,-29.529,-288.868,-494.404	0/1:95:35,60,0:35:1238:60,0:2113,0:-161.84,0,-83.125,-172.376,-101.187,-273.21	0/1:289:137,85,67:137:4784:85,67:3011,2246:-204.049,0,-362.222,-63.4084,-205.924,-431.037	0/1:6:5,1,0:5:178:1,0:36,0:-1.79209,0,-14.5625,-3.29724,-14.8635,-17.8016	1/2:17:4,5,8:4:129:5,8:180,284:-26.2561,-12.7712,-21.657,-4.32281,0,-12.2996	0/2:11:8,1,2:8:277:1,2:36,67:-3.00103,-2.46354,-24.4519,0,-19.3286,-21.6659	0/1:11:6,5,0:6:205:5,0:180,0:-13.2407,0,-15.4723,-15.0469,-16.9775,-31.6729	1/2:16:4,5,7:4:133:5,7:180,252:-23.3113,-9.82828,-19.0742,-3.95345,0,-12.5951	0/2:610:288,153,167:288:9826:153,167:5412,5824:-386.959,-32.8489,-781.731,0,-354.128,-744.665	0/1:68:25,43,0:25:872:43,0:1503,0:-115.09,0,-58.3244,-122.616,-71.2687,-193.536	0/1:117:49,40,28:49:1658:40,28:1428,980:-101.673,0,-120.998,-36.6953,-53.3028,-161.303	0/1:5:2,2,1:2:72:2,1:63,34:-4.44747,0,-5.28607,-2.28321,-3.13678,-7.87948	0/1:207:102,100,5:102:3542:100,5:3519,180:-255.752,0,-257.752,-271.77,-273.167,-558.129	0/1:107:47,60,0:47:1646:60,0:2115,0:-158.406,0,-116.21,-172.554,-134.271,-306.475	1/2:182:52,64,66:52:1769:64,66:2220,2297:-208.084,-43.2873,-167.508,-36.9669,0,-160.586	1/2:252:71,89,92:71:2498:89,92:3130,3205:-290.695,-57.2825,-233.838,-51.4386,0,-227.09	0/1:183:99,44,40:99:3344:44,40:1530,1329:-94.6036,0,-257.238,-16.89,-162.962,-275.321	0/1:121:48,73,0:48:1676:73,0:2587,0:-196.652,0,-114.698,-211.102,-136.674,-347.424	0/2:131:87,20,24:87:3034:20,24:707,836:-41.7896,-10.3954,-251.128,0,-189.167,-239.524	0/1:154:79,75,0:79:2778:75,0:2673,0:-194.457,0,-203.9,-218.238,-226.477,-444.362	0/1:86:26,60,0:26:917:60,0:2136,0:-166.62,0,-54.608,-174.446,-72.6698,-246.77	1/2:151:41,53,56:41:1387:53,56:1861,1940:-184.361,-45.2387,-141.718,-39.0377,0,-134.611	0/1:60:17,43,0:17:590:43,0:1513,0:-118.399,0,-35.3334,-123.517,-48.2777,-171.446	2/2:7:0,0,7:0:0:0,7:0,252:-23.029,-23.029,-23.029,-2.10721,-2.10721,0	0/1:172:67,105,0:67:2345:105,0:3673,0:-278.999,0,-157.485,-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chr10	17402408	.	A	G	10525.5	PASS	AB=0.279656;ABP=2359.95;AC=84;AF=0.446809;AN=188;AO=1593;CIGAR=1X;DP=6003;DPB=6003;DPRA=15.6497;EPP=3462.17;EPPR=9568.35;GTI=30;LEN=1;MEANALT=1.01111;MQM=32.457;MQMR=37.5657;NS=94;NUMALT=1;ODDS=0.450684;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55318;QR=154917;RO=4409;RPL=0;RPP=3462.17;RPPR=9577.03;RPR=1593;RUN=1;SAF=0;SAP=3462.17;SAR=1593;SRF=1;SRP=9568.35;SRR=4408;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:92:77,15:77:2737:15:502:-10.2425,0,-197.491	0/1:63:44,19:44:1549:19:671:-30.5155,0,-116.227	0/1:51:34,17:34:1201:17:595:-28.7283,0,-88.5896	0/1:55:42,13:42:1491:13:447:-17.6805,0,-112.021	0/1:55:26,29:26:911:29:993:-60.1799,0,-61.9596	0/1:77:43,34:43:1505:34:1182:-64.0166,0,-107.79	0/0:59:55,4:55:1937:4:144:0,-6.08966,-147.715	0/1:101:69,32:69:2413:32:1127:-52.17,0,-180.206	0/1:61:50,11:50:1776:11:396:-10.362,0,-112.324	0/1:61:36,25:36:1279:25:871:-52.0612,0,-92.8796	0/1:55:34,21:34:1169:21:752:-42.7474,0,-85.416	0/1:69:39,30:39:1353:30:1016:-54.9656,0,-97.7394	0/1:68:57,11:57:1988:11:388:-8.34844,0,-124.807	0/1:101:54,47:54:1888:47:1591:-93.0053,0,-133.803	0/1:52:37,15:37:1293:15:505:-24.7911,0,-81.508	0/1:28:24,4:24:840:4:131:-2.29104,0,-46.0918	0/1:61:42,19:42:1445:19:667:-31.0134,0,-108.089	0/1:50:37,13:37:1301:13:452:-18.4711,0,-98.8575	0/1:24:20,4:20:712:4:144:-3.51551,0,-41.6992	0/1:87:74,13:74:2587:13:423:-8.47097,0,-169.161	0/1:50:37,13:37:1296:13:456:-20.0755,0,-87.1494	0/1:141:110,31:110:3864:31:1067:-45.8778,0,-236.434	0/1:81:69,12:69:2409:12:415:-9.48385,0,-173.846	0/1:129:107,22:107:3750:22:765:-19.7539,0,-287.843	0/1:56:46,10:46:1618:10:348:-10.2748,0,-100.69	0/1:238:198,40:198:7007:40:1396:-43.3726,0,-462.292	0/1:76:54,22:54:1882:22:768:-37.2722,0,-102.75	0/1:19:12,7:12:423:7:236:-13.261,0,-31.4955	0/0:98:90,8:90:3171:8:276:0,-6.08734,-239.305	0/1:70:51,19:51:1815:19:672:-31.0438,0,-102.144	0/1:98:81,17:81:2891:17:591:-18.4954,0,-220.493	0/1:14:10,4:10:356:4:144:-7.08737,0,-27.2646	0/0:6:6,0:6:216:0:0:0,-1.80618,-16.7836	0/1:6:5,1:5:171:1:36:-1.09658,0,-13.4712	0/1:6:3,3:3:108:3:108:-6.32156,0,-7.85288	0/1:6:2,4:2:72:4:144:-8.93405,0,-4.80714	0/1:235:151,84:151:5325:84:2934:-171.442,0,-390.212	0/1:94:54,40:54:1915:40:1404:-78.9182,0,-138.829	0/1:42:21,21:21:747:21:729:-40.8509,0,-52.8701	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.14853	0/0:85:80,5:80:2827:5:167:0,-12.1154,-217.433	0/1:19:13,6:13:447:6:184:-9.21189,0,-33.6396	0/1:107:92,15:92:3224:15:532:-9.04966,0,-195.863	0/1:59:44,15:44:1560:15:532:-25.2283,0,-86.9364	0/1:50:33,17:33:1152:17:591:-32.5724,0,-82.7625	0/1:97:81,16:81:2872:16:546:-16.0382,0,-202.695	0/1:85:48,37:48:1648:37:1303:-70.5035,0,-115.721	0/0:89:80,9:80:2829:9:320:0,-0.956593,-192.09	0/1:57:34,23:34:1196:23:796:-45.7447,0,-86.883	0/1:35:30,5:30:1046:5:168:-3.39119,0,-61.1384	0/1:90:71,19:71:2516:19:659:-28.1159,0,-190.656	0/0:5:5,0:5:176:0:0:0,-1.50515,-11.212	0/1:58:45,13:45:1599:13:445:-15.809,0,-106.727	0/0:26:25,1:25:866:1:36:0,-4.52776,-67.5865	0/1:10:8,2:8:280:2:68:-2.39567,0,-21.7926	0/1:60:44,16:44:1556:16:564:-25.3804,0,-117.615	0/1:51:29,22:29:1023:22:780:-47.5386,0,-73.5912	0/1:10:8,2:8:284:2:68:-3.02558,0,-21.856	0/1:10:9,1:9:316:1:36:-0.288725,0,-20.4169	0/1:40:30,10:30:1006:10:352:-15.4722,0,-76.2733	0/1:149:119,30:119:4138:30:1038:-39.3439,0,-269.567	0/1:10:6,4:6:216:4:144:-8.78391,0,-15.9894	0/1:56:35,21:35:1218:21:734:-43.1955,0,-88.1667	0/1:112:93,19:93:3259:19:656:-18.5809,0,-215.654	0/1:27:22,5:22:780:5:176:-5.78007,0,-48.3948	0/1:30:22,8:22:783:8:275:-13.5394,0,-59.0355	0/1:56:41,15:41:1463:15:521:-24.9689,0,-74.8697	0/1:31:25,6:25:883:6:216:-8.07801,0,-37.366	0/1:20:14,6:14:488:6:196:-10.067,0,-36.979	0/1:20:14,6:14:500:6:208:-9.7337,0,-37.8829	0/1:127:79,47:79:2819:47:1656:-96.9385,0,-205.469	0/1:12:9,3:9:324:3:108:-5.31299,0,-22.5011	0/1:84:70,14:70:2427:14:485:-10.6996,0,-186.511	0/1:39:26,13:26:898:13:447:-21.2545,0,-64.6563	0/1:172:129,43:129:4539:43:1499:-64.0934,0,-342.293	0/1:61:53,8:53:1867:8:261:-3.52918,0,-143.68	0/1:151:125,26:125:4412:26:908:-21.5412,0,-278.762	0/0:40:37,3:37:1304:3:108:0,-3.91346,-90.263	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.9587	0/1:55:43,12:43:1484:12:399:-15.0335,0,-113.469	0/1:51:25,26:25:859:26:904:-51.5402,0,-59.8769	0/1:92:73,19:73:2547:19:661:-25.7667,0,-193.434	0/1:141:85,56:85:2971:56:1922:-113.061,0,-215.588	0/1:53:33,20:33:1117:20:691:-40.3239,0,-80.7654	0/1:78:47,31:47:1655:31:1082:-62.6786,0,-120.243	0/1:140:88,52:88:3091:52:1781:-100.112,0,-225.708	0/1:29:18,11:18:622:11:384:-19.8326,0,-34.123	0/1:59:38,21:38:1318:21:728:-36.0808,0,-97.5551	0/1:60:41,19:41:1443:19:663:-30.8387,0,-108.122	0/1:35:19,16:19:663:16:560:-33.1913,0,-47.5998	0/1:78:49,29:49:1705:29:1020:-53.8199,0,-85.1906	0/1:47:41,6:41:1460:6:216:-3.38352,0,-99.3995	0/1:21:18,3:18:635:3:104:-2.41709,0,-48.896	0/1:83:56,27:56:1983:27:934:-49.2921,0,-147.403
chr10	17402416	.	A	G	10656	PASS	AB=0.276242;ABP=2488.79;AC=85;AF=0.452128;AN=188;AO=1601;CIGAR=1X;DP=6046;DPB=6046;DPRA=15.7621;EPP=3479.54;EPPR=9490.88;GTI=30;LEN=1;MEANALT=1;MQM=32.4329;MQMR=37.6677;NS=94;NUMALT=1;ODDS=0.0623687;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56185;QR=158536;RO=4445;RPL=0;RPP=3479.54;RPPR=9499.49;RPR=1601;RUN=1;SAF=0;SAP=3479.54;SAR=1601;SRF=1;SRP=9646.52;SRR=4444;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:92:76,16:76:2717:16:572:-14.6057,0,-194.333	0/1:65:46,19:46:1625:19:656:-29.1405,0,-122.227	0/1:51:34,17:34:1203:17:608:-29.0949,0,-89.139	0/1:59:45,14:45:1603:14:496:-20.2271,0,-120.32	0/1:55:26,29:26:919:29:991:-60.1372,0,-62.7848	0/1:75:41,34:41:1472:34:1196:-64.7092,0,-105.175	0/0:60:55,5:55:1944:5:180:0,-3.52117,-144.024	0/1:102:70,32:70:2494:32:1125:-51.6697,0,-186.642	0/1:60:50,10:50:1796:10:341:-7.32007,0,-113.859	0/1:62:36,26:36:1284:26:917:-54.8219,0,-93.0092	0/1:56:37,19:37:1320:19:671:-37.0177,0,-98.0035	0/1:67:39,28:39:1386:28:973:-50.905,0,-100.776	0/1:68:57,11:57:2012:11:388:-8.34844,0,-126.183	0/1:100:55,45:55:1954:45:1585:-91.3128,0,-139.378	0/1:50:37,13:37:1319:13:456:-20.9919,0,-84.4824	0/1:27:23,4:23:828:4:125:-2.11679,0,-47.4741	0/1:63:44,19:44:1560:19:659:-30.2031,0,-117.347	0/1:50:38,12:38:1342:12:423:-16.0834,0,-102.384	0/1:24:20,4:20:705:4:144:-3.51551,0,-41.047	0/1:89:76,13:76:2705:13:444:-8.69631,0,-176.747	0/1:51:38,13:38:1356:13:455:-19.5527,0,-92.2705	0/1:138:107,31:107:3831:31:1095:-48.7199,0,-235.797	0/1:82:70,12:70:2474:12:419:-9.36445,0,-178.77	0/1:127:104,23:104:3707:23:815:-23.5168,0,-284.243	0/1:57:47,10:47:1649:10:343:-9.73366,0,-103.488	0/1:238:199,39:199:7135:39:1396:-42.49,0,-470.16	0/1:78:55,23:55:1968:23:816:-39.8046,0,-108.552	0/1:19:12,7:12:432:7:252:-13.8295,0,-32.22	0/0:99:91,8:91:3252:8:279:0,-6.3126,-244.714	0/1:73:54,19:54:1936:19:680:-30.4222,0,-111.321	0/1:102:85,17:85:3015:17:595:-17.3883,0,-230.342	0/1:14:10,4:10:356:4:144:-7.08737,0,-27.2646	0/0:6:6,0:6:216:0:0:0,-1.80618,-16.7836	0/1:6:5,1:5:180:1:36:-1.09658,0,-14.205	0/1:7:3,4:3:108:4:135:-8.11855,0,-7.55185	0/1:5:2,3:2:72:3:108:-6.62259,0,-5.10817	0/1:235:149,86:149:5339:86:2974:-174.835,0,-390.536	0/1:96:55,41:55:1967:41:1459:-82.5759,0,-142.473	0/1:44:21,23:21:752:23:799:-45.197,0,-52.6891	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.14853	0/0:89:84,5:84:2984:5:176:0,-12.8838,-229.39	0/1:19:13,6:13:464:6:196:-9.74027,0,-34.9666	0/1:107:91,16:91:3260:16:550:-10.7802,0,-198.048	0/1:58:43,15:43:1527:15:517:-24.5241,0,-84.8241	0/1:52:32,20:32:1140:20:703:-40.8665,0,-81.0714	0/1:94:79,15:79:2823:15:532:-15.3721,0,-198.856	0/1:86:48,38:48:1720:38:1328:-71.891,0,-121.517	0/1:88:78,10:78:2775:10:352:-1.95112,0,-186.639	0/1:59:37,22:37:1324:22:788:-43.8278,0,-97.0454	0/1:36:31,5:31:1116:5:176:-3.45809,0,-65.9281	0/1:100:79,21:79:2815:21:719:-30.0585,0,-211.801	0/0:3:3,0:3:108:0:0:0,-0.90309,-5.08903	0/1:58:45,13:45:1607:13:468:-16.7929,0,-104.789	0/0:26:25,1:25:900:1:36:0,-4.52776,-70.333	0/1:11:8,3:8:288:3:108:-4.81641,0,-22.0977	0/1:64:48,16:48:1715:16:563:-24.0287,0,-130.279	0/1:51:28,23:28:1004:23:816:-50.4076,0,-71.7581	0/1:10:8,2:8:288:2:72:-3.25785,0,-22.1464	0/1:10:9,1:9:309:1:36:-0.288725,0,-19.6318	0/1:40:30,10:30:1057:10:352:-15.4722,0,-80.3542	0/1:149:119,30:119:4239:30:1036:-38.9945,0,-273.604	0/1:11:7,4:7:252:4:144:-8.48288,0,-18.7363	0/1:60:38,22:38:1364:22:758:-44.8227,0,-99.0673	0/1:110:90,20:90:3218:20:688:-22.4526,0,-214.124	0/1:29:23,6:23:824:6:203:-7.49342,0,-51.3362	0/1:32:23,9:23:824:9:320:-15.7299,0,-61.9562	0/1:54:40,14:40:1428:14:504:-24.1065,0,-74.6785	0/1:31:25,6:25:881:6:216:-8.07801,0,-37.6462	0/1:20:14,6:14:492:6:185:-9.33431,0,-37.2803	0/1:20:14,6:14:495:6:212:-9.83915,0,-37.4607	0/1:129:82,47:82:2910:47:1635:-94.0653,0,-213.074	0/1:12:9,3:9:320:3:108:-5.31299,0,-22.1985	0/1:84:71,13:71:2517:13:460:-8.75726,0,-193.927	0/1:41:28,13:28:986:13:468:-21.1276,0,-71.0214	0/1:169:127,42:127:4555:42:1471:-61.6543,0,-343.703	0/1:59:52,7:52:1872:7:252:-2.64003,0,-144.361	0/1:148:122,26:122:4367:26:913:-22.2748,0,-276.752	0/0:39:36,3:36:1296:3:104:0,-3.7198,-91.5758	0/0:7:7,0:7:248:0:0:0,-2.10721,-21.9206	0/1:54:42,12:42:1508:12:424:-16.3661,0,-115.329	0/1:49:23,26:23:820:26:927:-53.122,0,-56.8788	0/1:95:75,20:75:2679:20:708:-28.5553,0,-203.469	0/1:142:87,55:87:3092:55:1943:-112.227,0,-225.181	0/1:54:34,20:34:1224:20:701:-40.256,0,-89.0148	0/1:77:47,30:47:1679:30:1068:-61.9159,0,-122.351	0/1:144:92,52:92:3282:52:1839:-101.821,0,-240.494	0/1:30:19,11:19:675:11:392:-19.7407,0,-34.3047	0/1:60:38,22:38:1342:22:760:-37.7977,0,-99.3201	0/1:62:41,21:41:1472:21:720:-34.6089,0,-109.738	0/1:38:20,18:20:716:18:633:-37.4556,0,-50.5559	0/1:78:50,28:50:1775:28:1004:-51.7727,0,-87.4743	0/1:46:40,6:40:1432:6:208:-3.31796,0,-96.952	0/1:21:18,3:18:640:3:108:-2.60372,0,-49.4081	0/1:78:54,24:54:1923:24:835:-43.2421,0,-143.608
chr10	17402424	.	G	T	11701.4	PASS	AB=0.341246;ABP=1303.33;AC=89;AF=0.473404;AN=188;AO=2044;CIGAR=1X;DP=6068;DPB=6068;DPRA=16.4674;EPP=4441.5;EPPR=8568.16;GTI=25;LEN=1;MEANALT=1;MQM=27.9506;MQMR=40.4858;NS=94;NUMALT=1;ODDS=0.455284;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73168;QR=143078;RO=4024;RPL=0;RPP=4441.5;RPPR=8576.76;RPR=2044;RUN=1;SAF=0;SAP=4441.5;SAR=2044;SRF=1;SRP=8732.33;SRR=4023;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:92:69,23:69:2431:23:812:-22.8042,0,-183.88	0/1:65:45,20:45:1616:20:705:-32.2344,0,-121.388	0/1:52:35,17:35:1236:17:608:-28.7939,0,-91.2843	0/1:56:43,13:43:1548:13:464:-18.6665,0,-116.316	0/1:55:26,29:26:904:29:1025:-61.4281,0,-61.933	0/1:75:41,34:41:1476:34:1216:-65.7184,0,-105.475	0/1:62:52,10:52:1868:10:345:-0.420005,0,-143.151	0/1:101:69,32:69:2463:32:1140:-52.576,0,-184.267	0/1:60:37,23:37:1314:23:813:-25.4007,0,-96.2131	0/1:62:36,26:36:1283:26:932:-55.824,0,-92.7551	0/1:57:37,20:37:1310:20:720:-39.4571,0,-96.7659	0/1:71:40,31:40:1415:31:1116:-58.674,0,-102.225	0/1:70:45,25:45:1608:25:900:-22.7781,0,-119.345	0/1:100:54,46:54:1911:46:1646:-94.2193,0,-135.963	0/1:52:30,22:30:1080:22:788:-32.5986,0,-77.9264	0/1:27:16,11:16:552:11:396:-7.46834,0,-39.2755	0/1:61:42,19:42:1492:19:680:-31.4606,0,-112.038	0/1:51:38,13:38:1355:13:464:-18.4834,0,-102.969	0/1:22:13,9:13:464:9:324:-6.77287,0,-34.148	0/1:88:61,27:61:2184:27:972:-22.8252,0,-162.58	0/1:49:32,17:32:1133:17:608:-24.0483,0,-84.3272	0/1:138:81,57:81:2883:57:2048:-77.5053,0,-207.223	0/1:81:63,18:63:2243:18:648:-17.6653,0,-170.203	0/1:126:102,24:102:3647:24:845:-26.5782,0,-279.338	0/1:56:34,22:34:1201:22:792:-23.2006,0,-88.1714	0/1:239:165,74:165:5873:74:2642:-77.6617,0,-434.086	0/1:76:36,40:36:1292:40:1417:-54.1416,0,-89.9208	0/1:19:12,7:12:423:7:252:-13.8295,0,-31.4955	0/1:98:83,15:83:2937:15:540:-3.11688,0,-224.898	0/1:72:36,36:36:1267:36:1281:-47.4007,0,-89.1259	0/1:103:86,17:86:3057:17:608:-17.7816,0,-233.62	0/1:14:10,4:10:356:4:144:-7.08737,0,-27.2646	0/0:6:5,1:5:180:1:36:0,-0.807161,-14.9265	0/1:5:4,1:4:144:1:36:-1.39761,0,-11.3734	0/1:7:3,4:3:108:4:144:-8.31476,0,-7.55185	0/1:6:2,4:2:72:4:144:-8.93405,0,-4.80714	0/1:231:146,85:146:5230:85:3052:-180.159,0,-382.497	0/1:97:55,42:55:1968:42:1498:-84.544,0,-142.335	0/1:45:21,24:21:752:24:860:-48.0866,0,-52.3881	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.14853	0/0:88:75,13:75:2619:13:468:0,-5.37332,-207.509	0/1:19:13,6:13:460:6:216:-10.1931,0,-34.6651	0/1:107:68,39:68:2444:39:1387:-31.7715,0,-178.067	0/1:59:30,29:30:1061:29:1044:-38.0729,0,-74.2026	0/1:53:31,22:31:1103:22:780:-44.5485,0,-79.6738	0/1:98:75,23:75:2655:23:818:-23.5074,0,-198.861	0/1:88:48,40:48:1712:40:1440:-76.2705,0,-122.302	0/1:89:67,22:67:2372:22:780:-12.5017,0,-178.767	0/1:58:35,23:35:1248:23:815:-46.361,0,-90.8297	0/1:35:22,13:22:779:13:468:-9.1987,0,-57.2187	0/1:100:79,21:79:2811:21:752:-32.2565,0,-211.633	0/1:5:2,3:2:72:3:108:-3.71808,0,-5.05838	0/1:59:38,21:38:1360:21:752:-23.6109,0,-100.892	0/0:26:23,3:23:824:3:108:0,-2.88285,-66.6216	0/1:11:8,3:8:288:3:108:-4.81641,0,-22.0977	0/1:63:46,17:46:1643:17:612:-27.6491,0,-124.297	0/1:50:27,23:27:968:23:824:-51.0703,0,-68.95	0/1:10:8,2:8:288:2:72:-3.25785,0,-22.1464	0/1:10:7,3:7:248:3:108:-1.93363,0,-18.9628	0/1:40:31,9:31:1104:9:324:-13.006,0,-84.5403	0/1:148:96,52:96:3411:52:1872:-61.4001,0,-250.553	0/1:11:7,4:7:243:4:144:-8.48288,0,-18.0271	0/1:60:38,22:38:1348:22:784:-45.8209,0,-97.9481	0/1:111:76,35:76:2697:35:1256:-36.7068,0,-199.994	0/1:29:18,11:18:627:11:396:-12.4722,0,-45.4779	0/1:31:23,8:23:813:8:288:-13.9377,0,-61.2927	0/1:56:25,31:25:892:31:1116:-40.3894,0,-60.693	0/1:31:11,20:11:392:20:716:-20.5127,0,-24.9217	0/1:20:14,6:14:489:6:212:-10.6369,0,-36.9279	0/1:19:14,5:14:492:5:180:-7.63315,0,-37.5813	0/1:126:82,44:82:2875:44:1575:-88.7357,0,-211.506	0/1:12:8,4:8:284:4:144:-6.15739,0,-21.3262	0/1:87:72,15:72:2576:15:536:-13.1837,0,-198.02	0/1:40:27,13:27:948:13:464:-19.5962,0,-70.3725	0/1:168:127,41:127:4507:41:1472:-61.8803,0,-340.555	0/1:60:52,8:52:1855:8:288:-5.55387,0,-142.642	0/1:153:101,52:101:3600:52:1872:-46.6789,0,-261.997	0/1:41:31,10:31:1096:10:360:-1.94607,0,-83.5758	0/0:7:7,0:7:248:0:0:0,-2.10721,-21.9206	0/1:54:42,12:42:1504:12:428:-16.4706,0,-115.081	0/1:51:25,26:25:877:26:932:-52.7585,0,-61.2387	0/1:96:76,20:76:2728:20:712:-28.4352,0,-207.191	0/1:144:86,58:86:3046:58:2080:-121.537,0,-220.679	0/1:53:33,20:33:1184:20:720:-41.7414,0,-85.9192	0/1:80:49,31:49:1743:31:1116:-63.8223,0,-127.023	0/1:149:96,53:96:3397:53:1908:-103.603,0,-249.341	0/1:31:13,18:13:468:18:648:-25.7647,0,-31.6558	0/1:60:38,22:38:1364:22:788:-38.9866,0,-101.06	0/1:62:42,20:42:1497:20:716:-33.3198,0,-111.921	0/1:36:19,17:19:675:17:612:-36.2028,0,-48.2008	0/1:81:31,50:31:1076:50:1796:-72.4173,0,-69.9121	0/1:44:33,11:33:1188:11:392:-6.5113,0,-89.6381	0/1:21:18,3:18:636:3:104:-2.41709,0,-49.0094	0/1:80:55,25:55:1935:25:896:-47.4162,0,-144.099
chr10	17402433	.	CATAAAC	CAAAAAC,CAAAAAAA	99786.8	PASS	AB=0.643178,0.277202;ABP=1033.98,2499.42;AC=103,85;AF=0.547872,0.452128;AN=188;AO=3998,1627;CIGAR=2M1X4M,1M1I1M1X3M1X;DP=6121;DPB=6354.86;DPRA=0,14.2737;EPP=8606.56,3536;EPPR=10.7656;GTI=10;LEN=1,8;MEANALT=2.96809,3.03333;MQM=40.458,32.3596;MQMR=59.1429;NS=94;NUMALT=2;ODDS=2668.87;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=142913,57401;QR=187;RO=7;RPL=3990,1627;RPP=8615.21,3536;RPPR=10.7656;RPR=8,0;RUN=1,1;SAF=1,0;SAP=8675.87,3536;SAR=3997,1627;SRF=0;SRP=18.2106;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:93:0,69,15:0:0:69,15:2476,518:-228.278,-33.7244,-12.9533,-194.636,0,-190.121	1/2:65:1,45,18:1:32:45,18:1616,638:-165.29,-38.7582,-27.7919,-124.263,0,-121.423	1/2:52:0,34,17:0:0:34,17:1216,611:-134.639,-39.1664,-28.9313,-95.5311,0,-90.4136	1/2:59:0,44,14:0:0:44,14:1572,484:-155.435,-32.9993,-19.754,-122.494,0,-118.279	1/2:55:0,26,29:0:0:26,29:914,1009:-140.573,-69.1635,-61.3367,-71.7285,0,-62.9986	1/2:76:0,42,33:0:0:42,33:1504,1174:-193.433,-75.418,-62.7747,-118.061,0,-108.127	1/1:58:0,48,5:0:0:48,5:1724,180:-149.014,-14.4494,0,-136.296,-1.63376,-134.79	1/2:102:0,69,33:0:0:69,33:2484,1168:-270.675,-75.5436,-54.7725,-195.438,0,-185.504	1/2:63:0,38,12:0:0:38,12:1355,406:-133.113,-26.7179,-15.2787,-106.469,0,-102.857	1/2:62:0,35,26:0:0:35,26:1256,917:-164.075,-65.7575,-55.2214,-98.3503,0,-90.5235	1/2:58:1,36,20:1:29:36,20:1292,704:-148.208,-47.4711,-38.9419,-98.7597,0,-95.0464	1/2:69:0,38,31:0:0:38,31:1368,1095:-177.787,-70.203,-58.7638,-107.897,0,-98.5652	1/2:69:0,44,11:0:0:44,11:1576,393:-149.533,-25.441,-12.1957,-124.17,0,-120.859	1/2:103:0,55,45:0:0:55,45:1966,1578:-259.397,-105.415,-88.8588,-153.943,0,-140.397	1/2:50:0,28,15:0:0:28,15:1004,536:-115.72,-37.3622,-28.9334,-78.4966,0,-73.9812	1/2:28:0,16,4:0:0:16,4:556,139:-53.1675,-9.6915,-4.87502,-43.5366,0,-42.3325	1/2:63:0,44,19:0:0:44,19:1572,674:-167.65,-43.9599,-30.7146,-123.996,0,-118.277	1/2:49:0,36,13:0:0:36,13:1296,452:-131.585,-29.6631,-18.826,-102.224,0,-98.3102	1/2:24:0,14,4:0:0:14,4:496,133:-48.1282,-8.98397,-4.76955,-39.2149,0,-38.0108	1/2:88:0,61,13:0:0:61,13:2185,447:-202.313,-31.781,-13.4182,-170.629,0,-166.716	1/2:51:0,33,12:0:0:33,12:1184,432:-121.719,-28.4724,-18.5384,-93.3546,0,-89.7422	1/2:142:0,80,31:0:0:80,31:2851,1088:-302.922,-80.4441,-56.3617,-222.563,0,-213.231	1/2:82:0,63,13:0:0:63,13:2252,449:-208.882,-32.6341,-13.6692,-176.375,0,-172.462	1/2:129:0,103,23:0:0:103,23:3687,805:-343.738,-54.3177,-23.3116,-289.479,0,-282.556	1/2:56:0,34,10:0:0:34,10:1220,330:-119.485,-23.29,-13.055,-96.2745,0,-93.2642	1/2:242:1,164,40:1:28:164,40:5844,1411:-556.434,-101.527,-54.3772,-453.087,0,-443.265	1/2:75:0,35,22:0:0:35,22:1256,766:-151.719,-52.8712,-42.3352,-98.9466,0,-92.3239	1/2:19:0,12,7:0:0:12,7:432,252:-51.4479,-17.4418,-13.8295,-34.3272,0,-32.22	1/1:100:0,84,8:0:0:84,8:2999,286:-259.262,-25.2865,0,-238.012,-3.94665,-235.604	1/2:72:0,37,19:0:0:37,19:1332,682:-151.305,-46.5688,-35.4307,-104.839,0,-99.1197	1/2:102:1,82,17:1:26:82,17:2940,597:-269.88,-40.7866,-18.1383,-227.373,0,-224.294	1/2:14:0,10,4:0:0:10,4:360,140:-38.4097,-9.9539,-6.9436,-28.771,0,-27.5669	1/1:6:0,5,0:0:0:5,0:180,0:-15.7846,-1.50515,0,-15.7846,-1.50515,-15.7846	1/2:6:0,5,1:0:0:5,1:180,36:-16.8079,-2.60173,-1.09658,-14.506,0,-14.205	1/2:7:0,2,4:0:0:2,4:72,144:-14.5694,-8.89051,-8.28845,-5.6694,0,-4.46528	1/2:6:0,2,4:0:0:2,4:72,142:-15.1744,-9.49154,-8.88948,-6.01126,0,-4.80714	1/2:237:0,151,86:0:0:151,86:5412,3030:-645.489,-223.616,-178.161,-422.203,0,-396.314	1/2:99:0,56,43:0:0:56,43:2004,1517:-260.329,-102.881,-86.023,-157.767,0,-144.823	1/2:45:0,20,23:0:0:20,23:716,817:-108.007,-51.6478,-45.6272,-56.3526,0,-49.4289	1/1:1:0,1,0:0:0:1,0:36,0:-3.4807,-0.30103,0,-3.4807,-0.30103,-3.4807	1/1:88:0,75,5:0:0:75,5:2688,173:-233.868,-22.5773,0,-221.857,-10.4877,-220.352	1/2:20:0,14,6:0:0:14,6:491,207:-52.377,-13.7962,-9.58182,-38.8811,0,-37.0749	1/2:109:0,71,15:0:0:71,15:2524,539:-234.422,-36.7741,-15.401,-197.726,0,-193.211	1/2:59:0,28,15:0:0:28,15:1008,538:-117.166,-38.5353,-30.1064,-78.7096,0,-74.1942	1/2:53:0,31,20:0:0:31,20:1108,700:-137.166,-50.5428,-41.2109,-86.774,0,-80.7534	1/2:97:0,73,16:0:0:73,16:2577,564:-242.229,-41.4599,-19.4847,-200.899,0,-196.083	1/2:90:0,49,40:0:0:49,40:1755,1415:-229.663,-91.5998,-76.8493,-138.27,0,-126.229	1/2:91:0,68,10:0:0:68,10:2437,346:-214.893,-24.9284,-4.4584,-190.049,0,-187.039	1/2:59:0,36,23:0:0:36,23:1259,799:-154.611,-56.3508,-45.5137,-98.5768,0,-91.6531	1/2:35:0,21,5:0:0:21,5:752,172:-71.1725,-12.3887,-6.06708,-58.8526,0,-57.3474	1/2:99:1,77,21:1:21:77,21:2741,749:-266.822,-54.0903,-32.4946,-211.565,0,-206.83	1/1:5:0,2,0:0:0:2,0:72,0:-6.28298,-0.60206,0,-6.28298,-0.60206,-6.28298	1/2:58:0,36,13:0:0:36,13:1296,464:-132.026,-30.0624,-19.2253,-102.063,0,-98.1499	1/1:24:0,21,1:0:0:21,1:756,35:-65.4392,-6.32163,0,-62.8187,-3.62618,-62.5177	1/2:11:0,8,3:0:0:8,3:288,108:-29.9194,-7.22465,-4.81641,-23.0008,0,-22.0977	1/2:64:0,47,17:0:0:47,17:1692,609:-174.28,-41.4126,-27.2642,-133.181,0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chr10	17403896	.	A	G	75889.3	PASS	AB=0.314296;ABP=5945.33;AC=94;AF=0.5;AN=188;AO=6235;CIGAR=1X;DP=19838;DPB=19838;DPRA=0;EPP=13533.5;EPPR=29509;GTI=0;LEN=1;MEANALT=1.07447;MQM=55.0199;MQMR=46.9331;NS=94;NUMALT=1;ODDS=37.0106;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222008;QR=485947;RO=13596;RPL=1;RPP=13533.5;RPPR=29509;RPR=6234;RUN=1;SAF=6235;SAP=13542.1;SAR=0;SRF=13596;SRP=29526.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:40,30:40:1425:30:1072:-75.3016,0,-106.156	0/1:402:330,72:330:11762:72:2576:-108.636,0,-917.957	0/1:228:139,89:139:4962:89:3136:-210.603,0,-370.556	0/1:440:301,139:301:10692:139:4913:-308.671,0,-814.741	0/1:85:65,20:65:2340:20:705:-36.2336,0,-181.924	0/1:101:73,28:73:2586:28:1000:-59.2102,0,-198.448	0/1:293:229,64:229:8185:64:2304:-118.419,0,-639.255	0/1:298:213,84:213:7580:84:3009:-177.889,0,-577.061	0/1:311:226,85:226:8047:85:2967:-169.843,0,-620.963	0/1:236:161,75:161:5750:75:2658:-167.718,0,-437.8	0/1:134:94,40:94:3369:40:1410:-86.28,0,-259.324	0/1:243:131,112:131:4716:112:3995:-282.537,0,-345.807	0/1:231:132,99:132:4668:99:3545:-246.822,0,-346.993	0/1:295:220,75:220:7893:75:2677:-150.984,0,-611.732	0/1:226:160,66:160:5745:66:2357:-143.735,0,-444.56	0/1:136:82,54:82:2929:54:1936:-132.009,0,-219.518	0/1:146:114,32:114:4066:32:1148:-56.9219,0,-312.601	0/1:119:101,18:101:3632:18:648:-22.3699,0,-283.364	0/1:70:53,17:53:1908:17:604:-33.0915,0,-147.424	0/1:319:219,100:219:7771:100:3577:-225.41,0,-594.763	0/1:486:328,158:328:11761:158:5657:-361.15,0,-892.836	0/1:189:125,64:125:4484:64:2296:-149.108,0,-343.744	0/1:235:151,84:151:5409:84:3008:-196.492,0,-413.171	0/1:125:96,29:96:3440:29:1002:-52.0514,0,-268.063	0/1:103:67,36:67:2374:36:1274:-83.527,0,-180.644	0/1:681:504,177:504:18035:177:6288:-358.498,0,-1400.66	0/1:316:201,114:201:7192:114:4065:-269.076,0,-543.245	0/1:101:62,39:62:2228:39:1374:-92.9528,0,-164.384	0/1:550:349,201:349:12478:201:7171:-476.827,0,-945.386	0/1:254:194,60:194:6938:60:2152:-116.593,0,-531.225	0/1:427:313,114:313:11125:114:4070:-235.542,0,-860.638	0/1:6:4,2:4:144:2:72:-4.95519,0,-11.4166	0/1:8:3,5:3:104:5:180:-13.8576,0,-7.17026	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.55725	0/1:9:8,1:8:288:1:36:-0.889005,0,-22.5128	0/1:12:4,8:4:144:8:288:-22.4772,0,-9.54805	0/1:620:437,183:437:15677:183:6545:-399.788,0,-1205.96	0/1:252:170,82:170:6100:82:2918:-186.102,0,-464.296	0/1:122:83,39:83:2980:39:1381:-86.4375,0,-225.181	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.97671	0/1:240:205,35:205:7345:35:1260:-40.7245,0,-579.331	0/1:74:55,19:55:1976:19:684:-39.2551,0,-152.897	0/1:257:133,123:133:4767:123:4408:-317.609,0,-346.291	0/1:195:124,71:124:4441:71:2540:-169.689,0,-337.272	0/1:222:161,61:161:5745:61:2161:-126.078,0,-443.157	0/1:165:104,61:104:3695:61:2181:-146.349,0,-279.267	0/1:199:136,63:136:4839:63:2260:-142.949,0,-368.848	0/1:342:239,103:239:8486:103:3676:-226.395,0,-653.807	0/1:189:126,63:126:4497:63:2264:-143.99,0,-342.136	0/1:271:198,72:198:7033:72:2512:-144.096,0,-545.824	0/1:210:172,38:172:6145:38:1341:-57.5027,0,-479.089	0/1:5:3,2:3:108:2:57:-3.8838,0,-8.50047	0/1:156:93,63:93:3329:63:2241:-152.374,0,-248.29	0/1:104:66,38:66:2349:38:1353:-90.5229,0,-177.719	0/1:9:5,4:5:180:4:144:-10.3154,0,-13.3019	0/1:240:168,72:168:5976:72:2569:-158.225,0,-456.871	0/1:49:44,5:44:1565:5:180:-1.72863,0,-125.063	0/1:6:4,2:4:144:2:72:-4.98334,0,-11.426	0/1:15:12,3:12:432:3:108:-5.51328,0,-34.3012	0/1:158:115,43:115:4078:43:1544:-91.0925,0,-310.179	0/1:300:223,77:223:8012:77:2727:-154.103,0,-623.784	0/1:4:3,1:3:104:1:36:-2.3545,0,-8.44624	0/1:442:255,186:255:9129:186:6614:-459.524,0,-677.543	0/1:362:259,103:259:9277:103:3651:-218.468,0,-710.549	0/1:134:96,38:96:3448:38:1360:-81.9725,0,-266.474	0/1:145:97,48:97:3484:48:1709:-110.153,0,-266.111	0/1:343:196,147:196:7032:147:5196:-362.8,0,-522.504	0/1:251:171,80:171:6114:80:2857:-179.804,0,-468.303	0/1:56:35,21:35:1256:21:756:-51.2244,0,-92.8698	0/1:96:66,30:66:2364:30:1080:-67.704,0,-180.366	0/1:182:151,31:151:5420:31:1112:-43.3385,0,-426.8	0/1:58:42,16:42:1512:16:576:-34.5893,0,-117	0/1:315:209,106:209:7466:106:3789:-243.218,0,-563.494	0/1:231:159,72:159:5712:72:2577:-160.046,0,-437.895	0/1:587:384,203:384:13731:203:7175:-461.772,0,-1034.06	0/1:375:245,130:245:8702:130:4630:-302.537,0,-660.575	0/1:151:106,45:106:3796:45:1599:-98.1499,0,-291.564	0/1:225:170,55:170:6040:55:1957:-106.862,0,-463.613	0/1:29:6,23:6:212:23:819:-63.7474,0,-10.3471	0/1:233:173,60:173:6163:60:2126:-120.572,0,-476.457	0/1:163:96,67:96:3433:67:2373:-162.946,0,-255.027	0/1:452:301,151:301:10738:151:5336:-343.417,0,-817.805	0/1:268:199,69:199:7110:69:2461:-140.702,0,-552.081	0/1:178:120,58:120:4316:58:2072:-131.722,0,-331.678	0/1:216:157,59:157:5629:59:2090:-122.612,0,-435.418	0/1:415:276,139:276:9849:139:4985:-322.567,0,-743.511	0/1:82:46,36:46:1656:36:1273:-89.314,0,-122.21	0/1:198:121,76:121:4344:76:2736:-185.127,0,-323.395	0/1:179:111,68:111:3957:68:2400:-160.949,0,-294.752	0/1:68:54,14:54:1944:14:489:-22.9545,0,-148.456	0/1:197:124,73:124:4460:73:2608:-174.522,0,-336.356	0/1:172:108,63:108:3853:63:2264:-151.07,0,-291.647	0/1:410:258,152:258:9238:152:5350:-356.742,0,-698.297	0/1:330:231,99:231:8281:99:3548:-218.926,0,-638.173
chr10	17403911	.	A	T	132788	PASS	AB=0.350948;ABP=3749.73;AC=89;AF=0.473404;AN=188;AO=6836;CIGAR=1X;DP=19698;DPB=19698;DPRA=61.1522;EPP=104.054;EPPR=45.2306;GTI=11;LEN=1;MEANALT=1.03261;MQM=44.6919;MQMR=52.1181;NS=94;NUMALT=1;ODDS=0.272233;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243977;QR=460894;RO=12858;RPL=3136;RPP=104.054;RPPR=45.569;RPR=3700;RUN=1;SAF=6836;SAP=14847.2;SAR=0;SRF=12857;SRP=27915.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:58,12:58:2080:12:432:-17.5753,0,-165.199	0/1:398:157,241:157:5644:241:8597:-636.813,0,-383.019	0/1:229:188,40:188:6714:40:1424:-54.8893,0,-529.649	0/1:434:199,235:199:7121:235:8369:-610.081,0,-507.962	0/1:84:29,55:29:1032:55:1964:-148.822,0,-65.8662	0/1:101:45,56:45:1620:56:2007:-145.657,0,-114.737	0/1:289:180,109:180:6452:109:3900:-258.969,0,-489.627	0/1:294:169,125:169:6072:125:4449:-300.3,0,-451.848	0/1:308:225,83:225:8076:83:2968:-169.452,0,-625.361	0/1:235:101,134:101:3601:134:4783:-353.446,0,-250.84	0/1:133:77,56:77:2753:56:2008:-137.998,0,-206.671	0/1:237:156,80:156:5600:80:2859:-181.744,0,-428.035	0/1:230:200,30:200:7173:30:1076:-26.2389,0,-570.562	0/1:291:141,150:141:5068:150:5332:-384.239,0,-366.459	0/1:226:185,41:185:6644:41:1472:-62.145,0,-527.46	0/1:133:101,32:101:3632:32:1143:-61.7336,0,-283.756	0/1:143:51,92:51:1832:92:3274:-243.595,0,-118.95	0/1:115:45,70:45:1616:70:2499:-185.107,0,-108.448	0/1:69:44,25:44:1584:25:900:-58.7025,0,-119.967	0/1:318:232,86:232:8336:86:3062:-173.351,0,-650.838	0/1:480:360,120:360:12912:120:4304:-232.925,0,-1007.62	0/1:188:166,22:166:5953:22:784:-12.8756,0,-476.681	0/0:234:215,19:215:7690:19:680:0,-9.60683,-624.783	0/1:123:54,69:54:1932:69:2467:-181.645,0,-134.764	0/1:104:75,29:75:2684:29:1040:-60.7871,0,-209.541	0/1:681:517,164:517:18513:164:5859:-312.756,0,-1450.68	0/1:312:241,71:241:8633:71:2527:-129.221,0,-676.593	0/1:101:54,47:54:1944:47:1654:-114.195,0,-144.073	0/1:545:448,97:448:16027:97:3462:-142.458,0,-1268.02	0/1:256:169,87:169:6049:87:3119:-193.318,0,-460.666	0/1:421:219,202:219:7853:202:7219:-513.837,0,-574.925	0/1:6:5,1:5:180:1:36:-1.75244,0,-14.6191	0/1:8:6,2:6:216:2:72:-4.3174,0,-17.0607	0/1:4:2,2:2:72:2:72:-5.55725,0,-5.6326	0/1:9:3,6:3:108:6:216:-16.0477,0,-7.34901	0/0:12:11,1:11:396:1:36:0,-0.0537426,-32.1325	0/1:622:387,235:387:13908:235:8399:-554.359,0,-1058.12	0/1:251:122,129:122:4376:129:4596:-330.209,0,-316.87	0/1:117:49,68:49:1749:68:2395:-175.071,0,-120.788	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81819	0/1:238:139,99:139:4977:99:3541:-240.287,0,-370.418	0/1:74:40,34:40:1432:34:1220:-85.8318,0,-106.307	0/1:260:228,32:228:8165:32:1118:-20.172,0,-652.197	0/1:195:144,51:144:5168:51:1832:-104.518,0,-404.131	0/1:221:126,95:126:4536:95:3415:-235.821,0,-338.095	0/1:164:138,26:138:4956:26:936:-33.7149,0,-394.029	0/1:202:133,69:133:4772:69:2480:-156.516,0,-366.368	0/1:341:283,58:283:10149:58:2072:-81.4617,0,-804.71	0/1:189:90,99:90:3209:99:3556:-257.414,0,-228.049	0/1:272:186,86:186:6668:86:3061:-190.265,0,-515.027	0/1:203:54,149:54:1932:149:5297:-405.624,0,-112.603	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4378	0/1:154:125,29:125:4476:29:1023:-44.0443,0,-351.683	0/1:106:75,31:75:2696:31:1116:-67.4087,0,-209.398	0/1:9:4,5:4:144:5:180:-13.3019,0,-10.3154	0/1:240:159,81:159:5712:81:2895:-182.161,0,-438.423	0/1:48:14,34:14:504:34:1216:-94.1072,0,-31.0804	0/1:6:5,1:5:176:1:36:-1.75244,0,-14.2951	0/1:15:11,4:11:396:4:144:-8.6234,0,-31.189	0/1:151:61,90:61:2184:90:3209:-236.957,0,-150.663	0/1:295:235,60:235:8443:60:2106:-98.4725,0,-665.937	0/1:5:4,1:4:144:1:36:-2.05347,0,-11.727	0/1:441:268,173:268:9590:173:6152:-412.08,0,-726.737	0/1:357:267,90:267:9537:90:3219:-173.866,0,-743.212	0/1:132:88,44:88:3156:44:1580:-100.181,0,-242.977	0/1:146:97,49:97:3480:49:1756:-112.629,0,-266.637	0/1:342:277,65:277:9909:65:2336:-104.638,0,-782.698	0/1:249:217,32:217:7750:32:1144:-23.5285,0,-616.649	0/1:57:32,25:32:1152:25:891:-60.4142,0,-85.8595	0/1:92:43,49:43:1544:49:1754:-127.173,0,-110.349	0/1:179:74,105:74:2649:105:3745:-277.903,0,-183.295	0/1:58:46,12:46:1648:12:428:-20.9881,0,-129.545	0/1:317:211,106:211:7584:106:3777:-235.631,0,-580.286	0/1:228:196,32:196:7028:32:1139:-31.0862,0,-557.945	0/1:578:379,199:379:13601:199:7108:-450.057,0,-1037.76	0/1:372:239,133:239:8557:133:4739:-308.33,0,-653.526	0/1:150:109,41:109:3905:41:1459:-83.527,0,-304.044	0/1:222:138,84:138:4926:84:3005:-198.312,0,-369.384	0/0:29:27,2:27:968:2:68:0,-2.4321,-79.4859	0/1:230:114,116:114:4080:116:4146:-297.475,0,-296.553	0/1:160:79,81:79:2825:81:2912:-209.653,0,-204.214	0/1:447:320,127:320:11461:127:4523:-265.309,0,-891.277	0/1:263:146,117:146:5244:117:4170:-291.471,0,-390.864	0/1:177:118,59:118:4240:59:2112:-134.676,0,-326.434	0/1:221:116,105:116:4168:105:3747:-265.1,0,-306.332	0/1:414:216,198:216:7745:198:7096:-499.256,0,-569.061	0/1:81:63,18:63:2264:18:648:-32.5267,0,-177.858	0/1:198:118,80:118:4221:80:2859:-190.759,0,-317.763	0/1:179:98,81:98:3516:81:2883:-198.541,0,-259.87	0/1:68:21,47:21:752:47:1672:-126.734,0,-44.5087	0/1:196:159,37:159:5692:37:1311:-56.2944,0,-450.17	0/1:172:150,20:150:5358:20:705:-11.4261,0,-427.184	0/1:407:280,127:280:10040:127:4503:-277.202,0,-777.013	0/1:330:205,125:205:7368:125:4446:-295.317,0,-559.723
chr10	17403916	.	G	T	140873	PASS	AB=0.455733;ABP=333.869;AC=94;AF=0.5;AN=188;AO=8859;CIGAR=1X;DP=19439;DPB=19439;DPRA=0;EPP=19153.3;EPPR=22831.9;GTI=0;LEN=1;MEANALT=1.03191;MQM=45.3419;MQMR=52.981;NS=94;NUMALT=1;ODDS=103.21;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=316558;QR=377522;RO=10577;RPL=8849;RPP=19153.3;RPPR=22823.3;RPR=10;RUN=1;SAF=8859;SAP=19240.1;SAR=0;SRF=10576;SRP=22962;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:39,29:39:1396:29:1021:-70.7012,0,-104.866	0/1:394:156,238:156:5595:238:8498:-629.767,0,-380.483	0/1:218:179,39:179:6374:39:1389:-54.8604,0,-503.019	0/1:430:198,232:198:7070:232:8286:-604.003,0,-504.526	0/1:84:29,55:29:1044:55:1976:-149.124,0,-66.9381	0/1:99:43,56:43:1540:56:2012:-146.7,0,-108.223	0/1:280:96,184:96:3436:184:6574:-498.917,0,-223.825	0/1:289:163,126:163:5818:126:4507:-306.781,0,-431.165	0/1:299:107,192:107:3832:192:6823:-515.545,0,-250.118	0/1:230:95,135:95:3403:135:4827:-359.042,0,-236.241	0/1:133:75,58:75:2649:58:2067:-143.297,0,-197.413	0/1:240:156,84:156:5536:84:2965:-190.491,0,-421.841	0/1:228:163,65:163:5787:65:2298:-135.907,0,-448.283	0/1:283:134,149:134:4788:149:5337:-386.463,0,-343.852	0/1:222:133,89:133:4717:89:3200:-217.692,0,-356.437	0/1:133:71,62:71:2536:62:2228:-158.503,0,-185.686	0/1:142:51,91:51:1808:91:3247:-241.461,0,-117.211	0/1:118:46,72:46:1615:72:2580:-191.35,0,-107.479	0/1:70:25,45:25:900:45:1606:-120.963,0,-59.477	0/1:312:136,176:136:4868:176:6308:-463.969,0,-342.899	0/1:473:252,221:252:8986:221:7890:-553.473,0,-661.349	0/1:187:131,56:131:4631:56:1999:-121.69,0,-358.959	0/1:230:189,41:189:6740:41:1468:-62.0191,0,-531.855	0/1:122:49,73:49:1764:73:2620:-195.593,0,-121.354	0/1:104:58,46:58:2069:46:1643:-114.739,0,-154.488	0/1:662:334,328:334:11952:328:11723:-841.078,0,-871.581	0/1:307:152,155:152:5433:155:5560:-399.355,0,-393.022	0/1:99:52,47:52:1846:47:1688:-116.919,0,-135.934	0/1:544:357,187:357:12739:187:6662:-427.868,0,-976.73	0/1:252:82,170:82:2944:170:6091:-457.539,0,-187.049	0/1:419:215,204:215:7661:204:7286:-520.602,0,-558.386	0/1:6:5,1:5:180:1:36:-1.75244,0,-14.6191	0/1:8:5,3:5:176:3:108:-7.52079,0,-13.5317	0/1:4:2,2:2:72:2:72:-5.55725,0,-5.6326	0/1:9:3,6:3:108:6:212:-15.7432,0,-7.34901	0/1:11:9,2:9:324:2:72:-3.41431,0,-25.9726	0/1:615:377,238:377:13475:238:8500:-565.24,0,-1021.55	0/1:250:120,130:120:4296:130:4637:-334.505,0,-310.105	0/1:117:46,71:46:1636:71:2539:-187.435,0,-110.997	0/1:2:1,1:1:36:1:36:-2.97671,0,-2.99621	0/1:236:78,158:78:2760:158:5659:-429.929,0,-173.775	0/1:75:40,35:40:1418:35:1260:-88.4806,0,-104.765	0/1:251:183,68:183:6534:68:2423:-139.591,0,-509.651	0/1:194:95,99:95:3400:99:3523:-255.361,0,-247.099	0/1:221:125,96:125:4459:96:3444:-237.958,0,-331.396	0/1:164:87,77:87:3095:77:2759:-195.977,0,-228.341	0/1:199:131,68:131:4680:68:2427:-153.38,0,-359.067	0/1:333:207,126:207:7397:126:4474:-299.074,0,-562.445	0/1:185:89,96:89:3166:96:3444:-249.64,0,-227.095	0/1:269:117,152:117:4180:152:5422:-401.656,0,-293.872	0/1:205:52,153:52:1864:153:5468:-420.333,0,-105.9	0/1:5:2,3:2:72:3:108:-8.50047,0,-5.28437	0/1:157:106,51:106:3779:51:1824:-114.239,0,-288.941	0/1:102:51,51:51:1824:51:1820:-131.625,0,-132.925	0/1:9:4,5:4:144:5:180:-13.3019,0,-10.3154	0/1:232:153,79:153:5474:79:2815:-177.622,0,-419.847	0/1:47:14,33:14:500:33:1188:-91.8644,0,-31.0259	0/1:5:4,1:4:144:1:36:-2.05347,0,-11.7407	0/1:15:4,11:4:144:11:396:-31.0732,0,-8.74123	0/1:155:61,94:61:2177:94:3359:-247.371,0,-148.762	0/1:295:160,135:160:5710:135:4822:-340.89,0,-421.891	0/1:5:4,1:4:144:1:36:-2.05347,0,-11.727	0/1:441:269,172:269:9621:172:6146:-411.459,0,-729.084	0/1:349:164,185:164:5880:185:6609:-476.009,0,-422.298	0/1:134:49,85:49:1751:85:3060:-231.779,0,-116.927	0/1:143:96,47:96:3436:47:1688:-107.465,0,-265.612	0/1:333:201,131:201:7187:131:4668:-314.206,0,-544.083	0/1:247:156,91:156:5581:91:3241:-210.214,0,-424.885	0/1:57:32,25:32:1152:25:892:-60.5356,0,-85.8595	0/1:94:42,52:42:1503:52:1859:-135.906,0,-106.154	0/1:177:74,103:74:2656:103:3682:-272.9,0,-183.612	0/1:58:28,30:28:1004:30:1073:-77.6999,0,-72.9509	0/1:308:204,104:204:7257:104:3701:-231.357,0,-554.297	0/1:226:150,76:150:5360:76:2728:-173.064,0,-410.194	0/1:579:377,201:377:13459:201:7168:-454.15,0,-1025	0/1:370:234,136:234:8335:136:4862:-319.865,0,-634.204	0/1:145:71,74:71:2548:74:2646:-191.396,0,-184.496	0/1:221:77,144:77:2743:144:5141:-385.537,0,-178.495	0/1:28:24,4:24:847:4:144:-4.63117,0,-66.817	0/1:226:110,116:110:3900:116:4132:-297.66,0,-281.7	0/1:156:77,79:77:2756:79:2836:-203.775,0,-199.207	0/1:439:311,128:311:11092:128:4578:-272.706,0,-860.549	0/1:264:142,122:142:5061:122:4360:-307.728,0,-374.037	0/1:174:116,58:116:4164:58:2088:-133.547,0,-320.236	0/1:212:108,104:108:3880:104:3714:-264.986,0,-284.258	0/1:407:210,196:210:7527:196:6992:-493.771,0,-551.617	0/1:78:45,33:45:1608:33:1184:-81.1812,0,-120.538	0/1:192:116,76:116:4151:76:2703:-179.371,0,-313.551	0/1:175:93,82:93:3309:82:2940:-204.785,0,-242.248	0/1:66:21,45:21:752:45:1602:-121.8,0,-45.4199	0/1:191:114,77:114:4038:77:2756:-186.401,0,-304.527	0/1:169:92,77:92:3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chr10	17403971	.	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chr10	17572749	.	C	T	35498.4	PASS	AB=0.454148;ABP=90.8269;AC=51;AF=0.271277;AN=188;AO=2213;CIGAR=1X;DP=10368;DPB=10368;DPRA=0.863271;EPP=4808.48;EPPR=17696.2;GTI=4;LEN=1;MEANALT=1.01786;MQM=59.9738;MQMR=59.9971;NS=94;NUMALT=1;ODDS=0.0830688;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79105;QR=291201;RO=8152;RPL=0;RPP=4808.48;RPPR=17696.2;RPR=2213;RUN=1;SAF=0;SAP=4808.48;SAR=2213;SRF=0;SRP=17704.9;SRR=8152;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:33,25:33:1180:25:900:-63.8613,0,-89.0483	0/0:166:166,0:166:5925:0:0:0,-49.971,-533.359	0/0:215:214,0:214:7663:0:0:0,-64.4204,-689.345	0/1:207:101,106:101:3623:106:3816:-281.322,0,-263.961	0/1:46:35,11:35:1234:11:396:-22.1354,0,-97.5153	0/1:25:10,15:10:360:15:532:-40.6873,0,-25.2186	0/1:248:119,129:119:4248:129:4603:-339.779,0,-307.842	0/0:272:272,0:272:9722:0:0:0,-81.8802,-874.927	0/1:78:46,32:46:1647:32:1152:-80.5098,0,-125.037	0/1:112:66,46:66:2340:46:1652:-115.253,0,-177.142	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:104:57,47:57:1996:47:1670:-119.279,0,-148.602	0/0:80:80,0:80:2835:0:0:0,-24.0824,-255.387	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:80:80,0:80:2837:0:0:0,-24.0824,-255.568	0/1:59:28,31:28:996:31:1112:-82.6306,0,-72.1941	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:26:15,11:15:527:11:388:-27.4306,0,-39.9334	0/1:198:82,116:82:2948:116:4145:-313.629,0,-205.949	0/1:151:89,62:89:3172:62:2224:-154.969,0,-240.25	0/0:137:137,0:137:4916:0:0:0,-41.2411,-442.59	0/0:188:185,3:185:6606:3:108:0,-46.5185,-584.546	0/0:156:147,9:147:5232:9:324:0,-17.4548,-441.513	0/1:61:35,26:35:1256:26:932:-65.836,0,-94.9825	0/0:365:365,0:365:12995:0:0:0,-109.876,-1169.37	0/1:207:105,102:105:3744:102:3654:-266.75,0,-274.846	0/1:23:11,12:11:396:12:428:-31.9351,0,-29.0591	0/0:211:211,0:211:7564:0:0:0,-63.5173,-680.798	0/1:173:98,75:98:3497:75:2646:-186.247,0,-262.862	0/0:143:143,0:143:5123:0:0:0,-43.0473,-461.211	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:28:20,8:20:712:8:279:-17.0187,0,-55.9778	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:17:12,5:12:432:5:180:-11.4346,0,-34.1037	0/0:198:198,0:198:7066:0:0:0,-59.6039,-636	0/1:111:69,42:69:2463:42:1508:-102.6,0,-188.509	0/1:42:21,21:21:743:21:756:-55.724,0,-54.5501	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:157:156,1:156:5591:1:36:0,-43.6634,-499.486	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/1:128:101,27:101:3585:27:972:-49.2661,0,-284.326	0/1:55:33,22:33:1160:22:788:-54.6881,0,-88.1473	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/1:134:94,40:94:3338:40:1429:-88.5222,0,-260.3	0/0:117:117,0:117:4165:0:0:0,-35.2205,-375.03	0/0:164:163,1:163:5840:1:36:0,-45.7706,-522.113	0/1:109:47,62:47:1684:62:2224:-167.612,0,-119.035	0/1:212:116,96:116:4164:96:3448:-246.713,0,-311.123	0/1:180:122,58:122:4352:58:2061:-131.574,0,-337.668	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:119:61,58:61:2156:58:2075:-151.197,0,-158.483	0/1:153:96,57:96:3424:57:2052:-138.894,0,-262.315	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:194:194,0:194:6939:0:0:0,-58.3998,-624.576	0/1:75:53,22:53:1895:22:788:-48.6675,0,-148.25	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:22:17,5:17:604:5:180:-9.9294,0,-48.0679	0/1:94:49,45:49:1756:45:1612:-117.073,0,-130.027	0/0:107:107,0:107:3797:0:0:0,-32.2102,-341.927	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	0/1:195:95,100:95:3386:100:3557:-261.638,0,-246.254	0/0:270:270,0:270:9656:0:0:0,-81.2781,-868.99	0/1:150:79,71:79:2840:71:2535:-183.245,0,-210.683	0/0:294:294,0:294:10525:0:0:0,-88.5028,-947.163	0/1:161:73,88:73:2624:88:3152:-235.439,0,-187.941	0/0:180:176,3:176:6316:3:108:0,-44.169,-558.455	0/1:31:15,16:15:540:16:576:-42.8431,0,-39.6046	0/1:107:66,41:66:2364:41:1459:-99.3951,0,-180.808	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:109:109,0:109:3904:0:0:0,-32.8123,-351.553	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/0:161:161,0:161:5763:0:0:0,-48.4658,-518.785	0/0:139:138,1:138:4939:1:36:0,-38.2449,-441.061	0/1:70:42,28:42:1504:28:980:-67.4389,0,-114.582	0/1:120:72,48:72:2566:48:1720:-118.962,0,-195.065	0/1:18:16,2:16:572:2:72:-1.41818,0,-46.3949	0/0:159:159,0:159:5700:0:0:0,-47.8638,-513.117	0/1:188:83,105:83:2967:105:3723:-278.678,0,-210.669	0/0:299:299,0:299:10710:0:0:0,-90.008,-963.805	0/0:60:59,0:59:2079:0:0:0,-17.7608,-187.018	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:37:37,0:37:1304:0:0:0,-11.1381,-117.659	0/1:116:64,52:64:2270:52:1864:-133.12,0,-169.642	0/1:22:11,11:11:392:11:396:-29.3601,0,-28.9974	0/1:79:37,42:37:1316:42:1504:-111.873,0,-94.9604	0/1:73:30,43:30:1076:43:1540:-116.918,0,-75.1777	0/1:53:29,24:29:1032:24:864:-62.128,0,-77.2389	0/1:106:43,63:43:1548:63:2238:-169.774,0,-107.704	0/1:52:19,33:19:660:33:1171:-90.0431,0,-44.067	0/0:194:194,0:194:6935:0:0:0,-58.3998,-624.217	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34
chr10	17721049	.	A	G	112925	PASS	AB=0.561106;ABP=112.082;AC=139;AF=0.747312;AN=186;AO=5408;CIGAR=1X;DP=6900;DPB=6900;DPRA=9.36413;EPP=11746.3;EPPR=3236.33;GTI=2;LEN=1;MEANALT=1.03261;MQM=59.622;MQMR=59.9953;NS=93;NUMALT=1;ODDS=2.14056;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191800;QR=52832;RO=1489;RPL=0;RPP=11746.3;RPPR=3227.65;RPR=5408;RUN=1;SAF=0;SAP=11746.3;SAR=5408;SRF=1;SRP=3227.65;SRR=1488;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:15,19:15:540:19:680:-51.2491,0,-38.7015	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	1/1:100:0,100:0:0:100:3554:-320.023,-30.103,0	0/1:172:92,80:92:3283:80:2851:-204.819,0,-243.912	0/1:20:2,18:2:68:18:640:-51.9075,0,-0.437108	0/1:25:5,20:5:176:20:707:-56.4288,0,-8.65927	0/1:72:35,37:35:1248:37:1319:-97.337,0,-90.9507	1/1:74:0,74:0:0:74:2622:-236.218,-22.2762,0	0/1:41:16,25:16:572:25:892:-68.2575,0,-39.4712	0/1:46:18,28:18:632:28:980:-74.6594,0,-43.3594	1/1:61:0,61:0:0:61:2151:-193.854,-18.3628,0	0/1:130:56,74:56:1973:74:2577:-192.954,0,-138.709	1/1:86:0,86:0:0:86:3027:-272.638,-25.8886,0	1/1:87:0,87:0:0:87:3069:-276.297,-26.1896,0	1/1:76:0,76:0:0:76:2720:-245.025,-22.8783,0	0/1:86:51,35:51:1789:35:1245:-86.4626,0,-135.402	1/1:33:0,33:0:0:33:1163:-104.952,-9.93399,0	1/1:40:0,40:0:0:40:1424:-128.446,-12.0412,0	0/1:28:16,12:16:560:12:432:-30.7785,0,-42.2999	0/1:160:50,110:50:1792:110:3910:-303.871,0,-113.398	0/1:130:46,84:46:1640:84:3002:-231.275,0,-108.755	1/1:68:0,68:0:0:68:2394:-215.7,-20.47,0	1/1:81:0,81:0:0:81:2880:-259.12,-24.3834,0	1/1:35:3,32:3:104:32:1129:-92.2135,-0.833245,0	0/1:32:9,23:9:315:23:807:-63.3162,0,-19.0543	1/1:140:0,140:0:0:140:4968:-447.247,-42.1442,0	0/1:116:48,68:48:1708:68:2402:-181.512,0,-119.086	0/1:55:25,30:25:892:30:1054:-78.5951,0,-64.043	1/1:166:0,166:0:0:166:5898:-530.898,-49.971,0	0/1:73:36,37:36:1273:37:1299:-95.2278,0,-92.8957	1/1:117:0,117:0:0:117:4176:-375.818,-35.2205,0	1/1:8:0,8:0:0:8:288:-26.2596,-2.40824,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0667,-0.90309,0	1/1:4:0,4:0:0:4:135:-12.4738,-1.20412,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:223:0,223:0:0:223:7918:-712.606,-67.1297,0	0/1:70:27,43:27:963:43:1514:-115.48,0,-65.9138	0/1:54:35,19:35:1244:19:680:-45.2703,0,-96.009	.:.:.:.:.:.:.:.	1/1:78:0,78:0:0:78:2799:-252.019,-23.4803,0	1/1:38:0,38:0:0:38:1368:-123.416,-11.4391,0	0/1:56:30,26:30:1072:26:932:-67.3412,0,-79.9348	0/1:72:35,37:35:1234:37:1308:-96.3309,0,-89.6885	1/1:63:1,62:1:36:62:2114:-186.537,-15.3666,0	0/1:69:33,36:33:1180:36:1283:-93.8932,0,-85.737	1/1:60:0,60:0:0:60:2144:-193.211,-18.0618,0	1/1:86:0,86:0:0:86:3075:-276.937,-25.8886,0	0/1:94:30,64:30:1068:64:2267:-175.978,0,-68.1352	0/1:84:28,56:28:991:56:1995:-154.494,0,-64.217	0/1:103:37,66:37:1320:66:2341:-179.927,0,-88.0959	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:136:51,84:51:1832:84:2982:-227.507,0,-124.162	0/1:75:37,38:37:1316:38:1345:-98.7663,0,-96.1646	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:122:1,121:1:36:121:4250:-379.072,-33.1274,0	0/1:48:14,34:14:488:34:1205:-94.3039,0,-29.801	1/1:2:0,2:0:0:2:72:-6.83188,-0.60206,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:57:31,26:31:1078:26:916:-65.5962,0,-80.1681	1/1:119:0,119:0:0:119:4204:-378.23,-35.8226,0	1/1:2:0,2:0:0:2:72:-6.82226,-0.60206,0	0/1:131:50,81:50:1777:81:2887:-220.603,0,-120.776	1/1:129:0,129:0:0:129:4631:-416.887,-38.8329,0	0/1:64:25,39:25:868:39:1375:-104.781,0,-59.167	1/1:82:0,82:0:0:82:2927:-263.614,-24.6845,0	0/1:115:54,61:54:1936:61:2157:-159.718,0,-139.898	1/1:90:0,90:0:0:90:3184:-286.765,-27.0927,0	0/1:53:25,28:25:879:28:999:-74.2653,0,-63.4722	0/1:56:23,33:23:824:33:1161:-87.9337,0,-57.6256	1/1:43:0,43:0:0:43:1526:-137.632,-12.9443,0	1/1:14:0,14:0:0:14:491:-44.5199,-4.21442,0	1/1:96:0,96:0:0:96:3402:-306.351,-28.8989,0	1/1:87:0,87:0:0:87:3082:-277.581,-26.1896,0	1/1:122:0,121:0:0:121:4292:-386.077,-36.4246,0	1/1:93:0,93:0:0:93:3286:-295.927,-27.9958,0	0/1:42:22,20:22:784:20:696:-50.3104,0,-58.2407	0/1:81:31,50:31:1103:50:1768:-135.009,0,-75.1964	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:67:1,66:1:36:66:2372:-210.135,-16.5707,0	0/1:58:21,36:21:748:36:1274:-97.4257,0,-50.1269	1/1:166:0,166:0:0:166:5883:-529.476,-49.971,0	1/1:73:0,73:0:0:73:2613:-235.388,-21.9752,0	1/1:94:0,94:0:0:94:3319:-298.928,-28.2968,0	1/1:55:0,55:0:0:55:1970:-177.575,-16.5567,0	0/1:140:72,68:72:2568:68:2399:-173.957,0,-189.226	0/1:25:16,9:16:563:9:324:-21.9801,0,-43.4734	0/1:75:31,44:31:1082:44:1547:-116.927,0,-75.11	0/1:84:42,42:42:1500:42:1493:-109.36,0,-110.008	0/1:54:21,33:21:739:33:1188:-90.9684,0,-50.5768	0/1:132:58,74:58:2024:74:2622:-196.485,0,-142.691	0/1:104:68,36:68:2402:36:1283:-84.4224,0,-185.13	1/1:139:0,139:0:0:139:4930:-443.807,-41.8432,0	1/1:151:1,150:1:36:150:5285:-471.872,-41.8573,0
chr10	18811306	.	CGT	TGT	15672.5	PASS	AB=0.397147;ABP=247.793;AC=48;AF=0.258065;AN=186;AO=1067;CIGAR=1X2M;DP=6026;DPB=6027;DPRA=0.802188;EPP=2319.97;EPPR=10736.6;GTI=7;LEN=1;MEANALT=1.19231;MQM=59.9944;MQMR=59.9786;NS=93;NUMALT=1;ODDS=0.336443;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=36;PRO=1;QA=38059;QR=173791;RO=4943;RPL=1067;RPP=2319.97;RPPR=10736.6;RPR=0;RUN=1;SAF=0;SAP=2319.97;SAR=1067;SRF=0;SRP=10736.6;SRR=4943;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:24,4:24:841:4:144:-4.88478,0,-67.5781	0/0:85:83,1:83:2914:1:36:0,-22.0481,-258.899	0/0:132:131,0:131:4567:0:0:0,-39.4349,-410.992	0/1:227:149,78:149:5219:78:2788:-182.827,0,-401.487	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:55:35,17:35:1201:17:604:-38.6779,0,-92.3778	0/0:51:51,0:51:1790:0:0:0,-15.3525,-161.382	0/1:36:21,15:21:746:15:536:-37.7377,0,-56.6273	0/1:83:44,39:44:1546:39:1396:-100.954,0,-114.444	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.489	0/1:66:37,29:37:1315:29:1040:-74.0464,0,-98.7833	0/0:67:67,0:67:2366:0:0:0,-20.169,-213.197	0/0:29:29,0:29:1020:0:0:0,-8.72987,-92.1114	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.341	0/1:44:24,20:24:860:20:720:-51.8835,0,-64.4767	0/0:38:38,0:38:1342:0:0:0,-11.4391,-121.08	0/0:30:30,0:30:1042:0:0:0,-9.0309,-94.0867	0/1:15:10,5:10:353:5:177:-11.7614,0,-27.5935	0/1:108:70,37:70:2473:37:1302:-84.8489,0,-190.194	0/1:146:72,74:72:2564:74:2648:-194.616,0,-187.06	0/0:44:42,1:42:1471:1:36:0,-9.70584,-129.084	0/1:63:44,19:44:1539:19:669:-41.5644,0,-119.833	0/0:51:47,3:47:1678:3:108:0,-5.33616,-141.232	0/1:11:7,4:7:244:4:144:-10.0023,0,-18.9881	0/0:226:226,0:226:7904:0:0:0,-68.0328,-711.405	0/1:99:68,31:68:2414:31:1112:-70.5894,0,-187.715	0/1:35:19,16:19:677:16:576:-41.6389,0,-50.7222	0/0:263:263,0:263:9245:0:0:0,-79.1709,-832.034	0/1:87:63,24:63:2193:24:845:-50.1775,0,-171.445	0/0:99:99,0:99:3432:0:0:0,-29.802,-309.097	.:.:.:.:.:.:.:.	0/0:7:7,0:7:242:0:0:0,-2.10721,-22.1168	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:202:202,0:202:7124:0:0:0,-60.8081,-641.228	0/1:35:17,18:17:596:18:621:-45.6752,0,-43.431	0/1:25:14,11:14:488:11:392:-28.0943,0,-36.7235	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:133:133,0:133:4615:0:0:0,-40.037,-415.475	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2256	0/1:50:36,14:36:1286:14:489:-29.2874,0,-100.992	0/1:56:36,20:36:1259:20:701:-46.554,0,-96.723	0/0:50:50,0:50:1767:0:0:0,-15.0515,-159.313	0/1:45:22,23:22:764:23:828:-61.2978,0,-55.5321	0/0:65:65,0:65:2295:0:0:0,-19.5669,-206.812	0/0:75:74,0:74:2603:0:0:0,-22.2762,-234.159	0/1:64:39,25:39:1372:25:896:-61.6944,0,-104.512	0/1:41:21,20:21:749:20:708:-51.7034,0,-55.3936	0/1:50:38,12:38:1330:12:432:-24.1697,0,-104.946	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:59:34,25:34:1218:25:900:-63.5602,0,-92.1662	0/1:54:37,16:37:1320:16:576:-35.9545,0,-102.885	0/0:4:4,0:4:126:0:0:0,-1.20412,-11.6521	0/0:135:135,0:135:4717:0:0:0,-40.639,-424.342	0/1:17:14,3:14:496:3:108:-4.95766,0,-39.8562	0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8522	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:32:21,11:21:741:11:396:-26.3498,0,-57.3792	0/0:75:74,1:74:2611:1:36:0,-18.979,-231.641	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:159:63,95:63:2207:95:3374:-256.062,0,-151.079	0/0:70:70,0:70:2448:0:0:0,-21.0721,-220.543	0/1:38:31,6:31:1100:6:216:-8.29258,0,-87.8114	0/0:79:78,0:78:2717:0:0:0,-23.4803,-244.416	0/1:121:77,44:77:2698:44:1584:-106.427,0,-206.64	0/0:100:100,0:100:3510:0:0:0,-30.103,-316.108	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:24:18,6:18:622:6:201:-11.1923,0,-49.0774	0/0:36:36,0:36:1266:0:0:0,-10.8371,-114.241	0/0:22:22,0:22:769:0:0:0,-6.62266,-69.5281	0/0:80:80,0:80:2818:0:0:0,-24.0824,-253.861	0/0:41:41,0:41:1422:0:0:0,-12.3422,-128.271	0/0:72:72,0:72:2532:0:0:0,-21.6742,-228.129	0/0:221:221,0:221:7874:0:0:0,-66.5276,-708.692	0/1:17:10,7:10:355:7:248:-17.5467,0,-27.1732	0/1:172:79,93:79:2772:93:3344:-249.399,0,-197.944	0/0:11:11,0:11:389:0:0:0,-3.31133,-35.348	0/1:69:39,30:39:1371:30:1046:-73.6748,0,-102.916	0/1:50:43,6:43:1509:6:212:-4.31545,0,-120.993	0/0:170:170,0:170:5985:0:0:0,-51.1751,-538.764	0/0:69:68,0:68:2398:0:0:0,-20.47,-215.722	0/0:69:69,0:69:2413:0:0:0,-20.7711,-217.425	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.427	0/1:113:65,48:65:2292:48:1716:-120.709,0,-172.525	0/1:17:12,5:12:409:5:180:-11.4346,0,-32.0188	0/1:67:43,24:43:1507:24:864:-57.9136,0,-115.752	0/1:66:47,18:47:1661:18:634:-37.4797,0,-129.87	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:34:15,19:15:519:19:684:-51.6553,0,-36.8009	0/1:52:21,31:21:747:31:1112:-84.7378,0,-51.9016	0/0:156:156,0:156:5434:0:0:0,-46.9607,-489.19	0/0:118:117,1:117:4139:1:32:0,-32.3222,-369.498
chr10	18811512	.	TCGCTT	TCCCTG,TCCCTT	230473	PASS	AB=0.431485,0.561436;ABP=244.924,197.517;AC=137,51;AF=0.728723,0.271277;AN=188;AO=7721,3354;CIGAR=2M1X2M1X,2M1X3M;DP=11153;DPB=11153;DPRA=0,1.36236;EPP=16768.9,7286.13;EPPR=5.18177;GTI=2;LEN=6,1;MEANALT=2.37234,2.70492;MQM=59.8689,59.9812;MQMR=60;NS=94;NUMALT=2;ODDS=1.08429;PAIRED=0,0;PAIREDR=0;PAO=0.333333,0.333333;PQA=12,12;PQR=12;PRO=0.333333;QA=268975,119479;QR=36;RO=1;RPL=0,0;RPP=16768.9,7286.13;RPPR=5.18177;RPR=7721,3354;RUN=1,1;SAF=0,0;SAP=16768.9,7286.13;SAR=7721,3354;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:76:0,41,35:0:0:41,35:1419,1248:-217.393,-102.089,-89.7466,-115.656,0,-105.12	1/1:113:0,112,0:0:0:112,0:3917,0:-352.363,-33.7154,0,-352.363,-33.7154,-352.363	1/1:152:0,150,0:0:0:150,0:5228,0:-470.341,-45.1545,0,-470.341,-45.1545,-470.341	1/2:315:0,144,171:0:0:144,171:5032,6053:-902.733,-493.398,-450.05,-409.686,0,-358.21	1/2:98:0,39,59:0:0:39,59:1365,2116:-283.979,-172.948,-161.208,-111.384,0,-93.6236	1/2:51:0,26,25:0:0:26,25:920,892:-148.009,-73.0739,-65.2472,-75.2905,0,-67.7647	1/2:99:0,37,62:0:0:37,62:1285,2194:-283.522,-179.061,-167.923,-104.811,0,-86.147	1/1:287:0,284,0:0:0:284,0:9783,0:-880.047,-85.4925,0,-880.047,-85.4925,-880.047	1/2:86:0,40,45:0:0:40,45:1405,1612:-245.871,-131.528,-119.486,-114.406,0,-100.859	1/2:109:0,58,50:0:0:58,50:2022,1792:-310.609,-146.171,-128.711,-164.452,0,-149.401	1/1:48:0,47,0:0:0:47,0:1649,0:-148.337,-14.1484,0,-148.337,-14.1484,-148.337	1/2:71:0,30,41:0:0:30,41:1053,1456:-204.658,-118.965,-109.934,-86.0451,0,-73.7029	1/1:48:0,48,0:0:0:48,0:1629,0:-146.81,-14.4494,0,-146.81,-14.4494,-146.81	1/1:33:0,33,0:0:0:33,0:1143,0:-103.174,-9.93399,0,-103.174,-9.93399,-103.174	1/1:51:0,51,0:0:0:51,0:1784,0:-160.842,-15.3525,0,-160.842,-15.3525,-160.842	1/2:49:0,29,18:0:0:29,18:975,613:-128.707,-49.721,-40.9911,-78.9765,0,-73.558	1/1:45:0,44,0:0:0:44,0:1509,0:-135.555,-13.2453,0,-135.555,-13.2453,-135.555	1/1:45:0,44,0:0:0:44,0:1532,0:-137.828,-13.2453,0,-137.828,-13.2453,-137.828	1/2:40:0,18,21:0:0:18,21:631,748:-112.314,-60.9736,-55.5551,-51.3436,0,-45.022	1/2:356:0,147,204:0:0:147,204:5103,7316:-1011.56,-596.736,-552.484,-414.83,0,-353.42	1/2:264:0,91,173:0:0:91,173:3076,6140:-749.956,-500.624,-473.23,-249.676,0,-197.597	1/1:138:0,138,0:0:0:138,0:4832,0:-435.045,-41.5421,0,-435.045,-41.5421,-435.045	1/2:79:0,28,51:0:0:28,51:993,1824:-229.989,-149.089,-140.66,-81.256,0,-65.9035	1/1:143:0,136,7:0:0:136,7:4758,237:-428.044,-40.9401,0,-408.831,-21.3882,-406.724	1/2:122:0,60,62:0:0:60,62:2097,2189:-349.146,-178.559,-160.497,-170.887,0,-152.223	1/1:400:0,394,2:0:0:394,2:13797,72:-1241.21,-118.606,0,-1235.34,-112.714,-1234.74	1/2:229:0,77,151:0:0:77,151:2712,5328:-654.635,-433.841,-410.662,-220.787,0,-175.331	1/2:25:0,11,14:0:0:11,14:379,495:-71.4498,-40.6686,-37.3573,-31.1296,0,-26.9152	1/1:346:0,344,1:0:0:344,1:12004,36:-1079.78,-103.554,0,-1076.84,-100.617,-1076.54	1/2:153:1,79,72:1:36:79,72:2737,2580:-429.602,-207.478,-186.634,-219.481,0,-200.744	1/1:55:0,53,0:0:0:53,0:1837,0:-165.276,-15.9546,0,-165.276,-15.9546,-165.276	1/1:8:0,8,0:0:0:8,0:282,0:-25.7215,-2.40824,0,-25.7215,-2.40824,-25.7215	1/2:13:0,3,10:0:0:3,10:107,360:-38.4558,-29.734,-28.8309,-9.07908,0,-6.06878	1/1:6:0,6,0:0:0:6,0:208,0:-19.0553,-1.80618,0,-19.0553,-1.80618,-19.0553	1/1:8:0,8,0:0:0:8,0:282,0:-25.7214,-2.40824,0,-25.7214,-2.40824,-25.7214	1/1:2:0,2,0:0:0:2,0:67,0:-6.36271,-0.60206,0,-6.36271,-0.60206,-6.36271	1/1:197:0,197,0:0:0:197,0:6862,0:-617.669,-59.3029,0,-617.669,-59.3029,-617.669	1/2:295:0,121,172:0:0:121,172:4257,6138:-846.99,-500.458,-464.033,-346.599,0,-294.822	1/2:44:0,22,22:0:0:22,22:776,764:-125.647,-62.4569,-55.8342,-63.5401,0,-56.9175	1/2:9:0,3,6:0:0:3,6:107,212:-26.3423,-17.6186,-16.7155,-9.07908,0,-7.2729	1/1:148:0,142,6:0:0:142,6:4978,216:-447.818,-42.7463,0,-430.193,-24.7619,-428.387	1/1:49:0,48,0:0:0:48,0:1650,0:-148.483,-14.4494,0,-148.483,-14.4494,-148.483	1/2:192:0,95,95:0:0:95,95:3318,3390:-546.245,-276.357,-247.759,-269.881,0,-241.283	1/2:87:0,44,42:0:0:44,42:1513,1499:-245.065,-122.201,-108.955,-122.855,0,-110.212	1/1:62:0,62,0:0:0:62,0:2161,0:-194.759,-18.6639,0,-194.759,-18.6639,-194.759	1/2:141:0,70,70:0:0:70,70:2437,2493:-401.342,-203.204,-182.132,-198.189,0,-177.117	1/1:229:0,226,0:0:0:226,0:7829,0:-704.252,-68.0328,0,-704.252,-68.0328,-704.252	1/1:239:0,237,1:0:0:237,1:8281,32:-744.981,-71.3441,0,-742.402,-68.7857,-742.101	1/2:188:0,49,137:0:0:49,137:1694,4884:-535.766,-398.121,-383.371,-137.644,0,-96.4027	1/2:218:0,98,118:0:0:98,118:3418,4216:-621.76,-343.774,-314.273,-278.013,0,-242.491	1/2:306:0,117,187:0:0:117,187:4073,6672:-875.177,-543.982,-508.761,-331.26,0,-274.967	1/2:14:0,10,4:0:0:10,4:351,144:-40.6691,-12.1095,-9.0992,-28.9169,0,-27.7128	1/2:233:0,93,137:0:0:93,137:3246,4887:-662.156,-398.161,-370.165,-264.035,0,-222.794	1/2:9:0,1,8:0:0:1,8:29,288:-26.1601,-23.8592,-23.5581,-2.59863,0,-0.190386	1/1:14:0,14,0:0:0:14,0:492,0:-44.6123,-4.21442,0,-44.6123,-4.21442,-44.6123	1/1:165:0,162,1:0:0:162,1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chr10	19049415	.	G	A	119217	PASS	AB=0.510721;ABP=6.59556;AC=137;AF=0.728723;AN=188;AO=5729;CIGAR=1X;DP=7503;DPB=7503;DPRA=26.8817;EPP=12443.4;EPPR=3840.01;GTI=1;LEN=1;MEANALT=1.03226;MQM=58.68;MQMR=59.6262;NS=94;NUMALT=1;ODDS=2.69852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203184;QR=62560;RO=1771;RPL=0;RPP=12443.4;RPPR=3840.01;RPR=5729;RUN=1;SAF=0;SAP=12443.4;SAR=5729;SRF=0;SRP=3848.69;SRR=1771;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:20,25:20:716:25:900:-67.7388,0,-51.2041	1/1:72:0,72:0:0:72:2564:-231.011,-21.6742,0	1/1:76:0,76:0:0:76:2704:-243.569,-22.8783,0	0/1:177:70,107:70:2471:107:3811:-289.681,0,-169.348	0/1:77:35,42:35:1244:42:1490:-111.168,0,-89.0715	0/1:61:15,46:15:536:46:1647:-130.074,0,-30.2038	0/1:120:51,69:51:1797:69:2443:-183.974,0,-125.88	1/1:94:0,94:0:0:94:3329:-299.628,-28.2968,0	0/1:90:51,39:51:1792:39:1395:-98.7198,0,-134.459	0/1:75:42,33:42:1496:33:1184:-84.2059,0,-112.355	1/1:54:1,53:1:36:53:1859:-163.806,-12.6573,0	0/1:72:33,39:33:1162:39:1396:-104.229,0,-83.1997	1/1:51:0,51:0:0:51:1810:-163.144,-15.3525,0	1/1:43:0,43:0:0:43:1523:-136.827,-12.9443,0	1/1:63:0,63:0:0:63:2256:-203.227,-18.9649,0	0/1:41:18,23:18:623:23:811:-60.9677,0,-44.0509	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:35:0,35:0:0:35:1230:-110.967,-10.5361,0	0/1:39:14,25:14:500:25:888:-68.4985,0,-33.596	0/1:132:74,58:74:2617:58:2048:-144.83,0,-195.995	0/1:125:67,58:67:2388:58:2049:-147.006,0,-177.535	1/1:155:0,155:0:0:155:5494:-494.231,-46.6597,0	1/1:128:0,128:0:0:128:4523:-406.548,-38.5318,0	1/1:71:0,71:0:0:71:2516:-226.466,-21.3731,0	0/1:78:42,35:42:1483:35:1247:-88.9364,0,-110.199	1/1:233:0,233:0:0:233:8226:-739.66,-70.14,0	0/1:153:63,90:63:2215:90:3184:-240.592,0,-153.496	0/1:41:21,20:21:748:20:716:-52.3805,0,-55.2938	1/1:232:2,230:2:72:230:8164:-726.223,-63.0022,0	0/1:103:48,55:48:1680:55:1936:-143.414,0,-120.467	1/1:78:0,78:0:0:78:2772:-249.584,-23.4803,0	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	0/1:18:9,9:9:315:9:324:-24.042,0,-23.2687	1/1:9:0,9:0:0:9:324:-29.4697,-2.70927,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.9712	1/1:210:0,210:0:0:210:7390:-664.501,-63.2163,0	0/1:165:64,101:64:2241:101:3584:-272.233,0,-152.274	0/1:68:37,31:37:1298:31:1100:-78.7112,0,-96.6359	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	1/1:103:2,101:2:72:101:3588:-316.199,-24.1694,0	1/1:33:0,33:0:0:33:1166:-105.201,-9.93399,0	0/1:82:43,39:43:1499:39:1383:-100.083,0,-110.515	0/1:53:31,21:31:1112:21:730:-49.8919,0,-84.3757	1/1:58:0,58:0:0:58:2072:-186.177,-17.4597,0	0/1:89:44,45:44:1539:45:1607:-117.599,0,-111.996	1/1:136:0,136:0:0:136:4834:-435.117,-40.9401,0	1/1:162:0,162:0:0:162:5742:-516.554,-48.7669,0	0/1:101:56,45:56:1980:45:1608:-114.589,0,-148.061	0/1:91:48,43:48:1716:43:1509:-107.449,0,-127.244	0/1:88:40,48:40:1428:48:1683:-125.223,0,-102.327	0/1:14:4,10:4:135:10:356:-28.1634,0,-8.26809	0/1:90:49,41:49:1728:41:1435:-102.33,0,-128.668	0/1:35:21,14:21:739:14:496:-34.4265,0,-56.2963	1/1:24:0,24:0:0:24:856:-77.3253,-7.22472,0	1/1:109:0,108:0:0:108:3846:-345.615,-32.5112,0	0/1:40:14,26:14:478:26:923:-71.3352,0,-31.3011	1/1:10:0,10:0:0:10:356:-32.3726,-3.0103,0	0/1:9:5,4:5:176:4:144:-10.6006,0,-13.4757	0/1:55:34,21:34:1203:21:729:-49.2634,0,-92.0184	1/1:104:2,102:2:72:102:3617:-318.73,-24.4704,0	0/1:8:3,5:3:108:5:176:-13.775,0,-7.66693	0/1:162:70,92:70:2482:92:3255:-244.272,0,-174.865	1/1:137:0,137:0:0:137:4862:-437.496,-41.2411,0	0/1:56:19,37:19:672:37:1288:-98.8695,0,-43.9473	1/1:99:0,99:0:0:99:3508:-315.186,-29.802,0	0/1:106:52,54:52:1842:54:1926:-141.684,0,-134.142	1/1:97:1,96:1:36:96:3416:-303.923,-25.6016,0	0/1:20:11,9:11:396:9:311:-22.3031,0,-29.8314	0/1:36:16,20:16:572:20:712:-53.5696,0,-40.9681	1/1:77:0,77:0:0:77:2727:-245.477,-23.1793,0	1/1:17:0,17:0:0:17:608:-55.0382,-5.11751,0	1/1:157:1,156:1:36:156:5507:-491.912,-43.6634,0	1/1:65:0,65:0:0:65:2311:-207.711,-19.567,0	1/1:106:0,106:0:0:106:3754:-337.34,-31.9092,0	1/1:124:0,124:0:0:124:4409:-396.623,-37.3277,0	0/1:114:52,62:52:1863:62:2176:-161.554,0,-133.619	0/1:80:42,38:42:1479:38:1364:-98.9779,0,-109.298	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:83:0,83:0:0:83:2965:-266.9,-24.9855,0	0/1:79:40,39:40:1391:39:1391:-101.635,0,-101.699	1/1:161:1,160:1:36:160:5676:-506.704,-44.8676,0	1/1:81:0,81:0:0:81:2874:-258.868,-24.3834,0	1/1:53:2,51:2:68:51:1792:-155.039,-9.49688,0	1/1:64:0,64:0:0:64:2284:-205.708,-19.2659,0	0/1:131:73,58:73:2570:58:2058:-145.989,0,-192.101	0/1:32:16,16:16:576:16:564:-41.4573,0,-42.5161	0/1:69:33,36:33:1176:36:1271:-93.8494,0,-85.3652	0/1:67:36,31:36:1275:31:1096:-78.7809,0,-94.8833	0/1:39:25,14:25:896:14:496:-33.2341,0,-69.2076	0/1:102:60,42:60:2099:42:1496:-104.095,0,-158.47	0/1:45:32,13:32:1127:13:464:-28.4512,0,-88.1855	1/1:108:0,108:0:0:108:3851:-346.46,-32.5112,0	1/1:84:1,83:1:36:83:2971:-263.748,-21.6882,0
chr10	19099953	.	C	A	76282.4	PASS	AB=0.605948;ABP=212.828;AC=137;AF=0.728723;AN=188;AO=3618;CIGAR=1X;DP=4470;DPB=4470;DPRA=0;EPP=7859.4;EPPR=1712.4;GTI=6;LEN=1;MEANALT=1.02128;MQM=54.9516;MQMR=59.9682;NS=94;NUMALT=1;ODDS=1.46625;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129408;QR=30379;RO=850;RPL=0;RPP=7859.4;RPPR=1712.4;RPR=3618;RUN=1;SAF=0;SAP=7859.4;SAR=3618;SRF=0;SRP=1848.76;SRR=850;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:4,12:4:144:12:432:-34.2609,0,-8.49714	1/1:52:0,52:0:0:52:1868:-166.916,-15.6536,0	1/1:86:0,86:0:0:86:3083:-277.168,-25.8886,0	0/1:111:52,59:52:1853:59:2098:-155.453,0,-133.634	1/1:32:2,30:2:72:30:1076:-89.9302,-2.79624,0	1/1:18:1,17:1:36:17:608:-51.2927,-1.82027,0	0/1:30:19,11:19:680:11:396:-26.8414,0,-52.4983	1/1:88:0,88:0:0:88:3168:-285.05,-26.4906,0	0/1:53:17,36:17:608:36:1296:-100.864,0,-39.0974	0/1:40:27,13:27:972:13:468:-30.3855,0,-75.7283	1/1:32:0,32:0:0:32:1139:-102.747,-9.63296,0	0/1:59:24,35:24:847:35:1249:-94.4448,0,-58.788	1/1:48:0,48:0:0:48:1707:-153.619,-14.4494,0	1/1:31:0,31:0:0:31:1116:-100.615,-9.33193,0	1/1:49:0,49:0:0:49:1750:-157.645,-14.7505,0	0/1:32:14,18:14:504:18:648:-48.8102,0,-36.0651	1/1:20:0,19:0:0:19:684:-61.4671,-5.71957,0	1/1:13:0,13:0:0:13:464:-42.0558,-3.91339,0	0/1:13:9,4:9:324:4:135:-8.54379,0,-25.5925	0/1:45:15,30:15:540:30:1080:-83.8905,0,-35.3902	0/1:99:50,49:50:1792:49:1760:-128.229,0,-131.761	1/1:49:0,49:0:0:49:1764:-158.933,-14.7505,0	0/1:52:19,33:19:680:33:1188:-91.4792,0,-45.8694	0/1:27:4,23:4:144:23:828:-66.6114,0,-5.18581	0/1:27:3,24:3:108:24:855:-68.8654,0,-1.94736	1/1:116:0,116:0:0:116:4147:-373.173,-34.9195,0	0/1:82:38,44:38:1364:44:1556:-115.269,0,-98.3763	0/1:13:7,6:7:237:6:216:-15.8491,0,-17.7457	1/1:115:0,115:0:0:115:4117:-369.867,-34.6185,0	0/1:64:23,41:23:820:41:1453:-111.621,0,-54.8566	1/1:49:0,49:0:0:49:1749:-157.407,-14.7505,0	1/1:19:0,19:0:0:19:684:-61.8026,-5.71957,0	0/1:22:4,18:4:144:18:640:-51.1742,0,-6.69096	1/1:13:0,13:0:0:13:468:-42.3919,-3.91339,0	1/1:78:0,78:0:0:78:2772:-249.402,-23.4803,0	0/1:22:12,10:12:414:10:360:-25.9843,0,-30.9663	1/1:111:0,111:0:0:111:3975:-357.554,-33.4143,0	0/1:57:16,41:16:568:41:1456:-113.992,0,-34.2932	0/1:26:8,18:8:284:18:635:-49.58,0,-18.0766	0/1:10:3,7:3:108:7:248:-19.624,0,-7.06487	1/1:36:0,36:0:0:36:1292:-116.294,-10.8371,0	1/1:17:0,17:0:0:17:612:-55.3349,-5.11751,0	0/1:75:10,65:10:356:65:2306:-184.545,0,-9.804	0/1:34:15,19:15:525:19:684:-51.4971,0,-37.343	1/1:22:0,22:0:0:22:792:-71.5279,-6.62266,0	0/1:74:22,52:22:783:52:1864:-145.565,0,-48.5167	1/1:91:0,91:0:0:91:3259:-291.994,-27.3937,0	1/1:125:0,125:0:0:125:4470:-401.398,-37.6288,0	0/1:49:21,28:21:752:28:1004:-75.7749,0,-53.2558	0/1:58:31,27:31:1108:27:972:-70.1908,0,-82.5713	0/1:12:6,6:6:212:6:216:-16.1726,0,-15.8124	0/1:17:12,5:12:428:5:180:-11.4226,0,-33.7413	0/1:45:19,26:19:684:26:932:-70.5541,0,-48.344	0/1:19:9,10:9:324:10:356:-26.6531,0,-23.7863	1/1:14:0,14:0:0:14:504:-45.6367,-4.21442,0	1/1:58:0,58:0:0:58:2074:-186.23,-17.4597,0	0/1:9:4,5:4:144:5:171:-13.0063,0,-10.6043	1/1:15:0,15:0:0:15:536:-48.5617,-4.51545,0	0/1:24:9,15:9:324:15:525:-40.3405,0,-22.2811	0/1:24:4,20:4:144:20:716:-57.4534,0,-6.0889	1/1:63:0,63:0:0:63:2247:-202.118,-18.9649,0	0/1:11:2,9:2:72:9:324:-26.1732,0,-3.52539	0/1:102:49,53:49:1760:53:1908:-141.071,0,-127.979	1/1:62:0,62:0:0:62:2214:-199.281,-18.6639,0	0/1:37:18,19:18:648:19:684:-50.5389,0,-47.5138	1/1:35:0,35:0:0:35:1239:-111.484,-10.5361,0	0/1:93:36,56:36:1292:56:2016:-153.033,0,-88.69	1/1:37:0,37:0:0:37:1328:-119.639,-11.1381,0	0/1:19:11,8:11:392:8:279:-19.5682,0,-29.9005	0/1:22:11,11:11:396:11:383:-28.1479,0,-29.3601	1/1:30:0,30:0:0:30:1072:-96.5197,-9.0309,0	1/1:19:0,19:0:0:19:680:-61.4745,-5.71957,0	1/1:64:0,64:0:0:64:2271:-204.185,-19.2659,0	1/1:53:0,53:0:0:53:1904:-171.258,-15.9546,0	1/1:136:0,136:0:0:136:4880:-438.439,-40.9401,0	1/1:83:0,83:0:0:83:2976:-267.717,-24.9855,0	0/1:38:9,29:9:324:29:1036:-81.9188,0,-18.0667	0/1:68:29,39:29:1044:39:1404:-105.951,0,-73.8048	0/1:24:5,19:5:180:19:684:-53.9756,0,-9.32734	0/1:38:11,27:11:388:27:968:-75.6258,0,-23.8182	0/1:53:16,37:16:568:37:1319:-102.835,0,-35.4973	1/1:119:0,119:0:0:119:4276:-383.77,-35.8226,0	1/1:21:0,21:0:0:21:739:-66.7841,-6.32163,0	1/1:41:0,41:0:0:41:1476:-133.04,-12.3422,0	1/1:17:0,17:0:0:17:608:-55.0135,-5.11751,0	0/1:80:27,53:27:964:53:1896:-146.528,0,-62.9944	0/1:19:7,12:7:244:12:432:-33.3578,0,-16.5799	0/1:44:13,31:13:464:31:1101:-86.0392,0,-28.8522	0/1:44:18,26:18:648:26:923:-69.9226,0,-45.4066	0/1:12:6,6:6:212:6:212:-15.6053,0,-15.8124	0/1:70:28,42:28:1000:42:1480:-112.084,0,-69.2433	0/1:38:21,17:21:756:17:612:-43.7659,0,-56.9281	1/1:86:0,86:0:0:86:3088:-277.486,-25.8886,0	1/1:55:0,55:0:0:55:1948:-175.336,-16.5567,0
chr10	19113592	.	T	G	151528	PASS	AB=0.502671;ABP=3.24229;AC=137;AF=0.728723;AN=188;AO=5636;CIGAR=1X;DP=7507;DPB=7507;DPRA=0;EPP=12.8736;EPPR=21.7696;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.9936;MQMR=60;NS=94;NUMALT=1;ODDS=1.02569;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200338;QR=66730;RO=1867;RPL=10;RPP=12154.7;RPPR=4031.13;RPR=5626;RUN=1;SAF=2908;SAP=15.4936;SAR=2728;SRF=1000;SRP=23.584;SRR=867;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	1/1:109:0,109:0:0:109:3846:-346.336,-32.8123,0	1/1:54:0,54:0:0:54:1908:-171.995,-16.2556,0	0/1:99:46,53:46:1648:53:1904:-141.836,0,-118.807	0/1:46:25,21:25:892:21:729:-52.08,0,-66.7523	0/1:25:15,10:15:540:10:360:-25.2186,0,-41.4108	0/1:69:35,34:35:1256:34:1209:-88.3431,0,-92.5742	1/1:107:0,107:0:0:107:3797:-341.929,-32.2102,0	0/1:82:33,47:33:1176:47:1645:-123.894,0,-81.7057	0/1:70:28,42:28:996:42:1488:-113.141,0,-68.8828	1/1:81:0,81:0:0:81:2864:-257.997,-24.3834,0	0/1:112:49,63:49:1756:63:2243:-168.418,0,-124.609	1/1:92:0,92:0:0:92:3267:-294.252,-27.6948,0	1/1:90:0,90:0:0:90:3167:-285.253,-27.0927,0	1/1:105:0,105:0:0:105:3753:-337.969,-31.6082,0	0/1:83:42,41:42:1504:41:1468:-107.43,0,-110.669	1/1:88:0,88:0:0:88:3138:-282.647,-26.4906,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:50:21,29:21:752:29:1044:-79.2233,0,-52.9548	0/1:125:67,58:67:2381:58:2079:-149.751,0,-176.918	0/1:140:71,69:71:2520:69:2476:-180.949,0,-184.906	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:75:31,44:31:1112:44:1562:-118.293,0,-77.8141	0/1:64:8,56:8:288:56:1993:-160.377,0,-7.00149	0/1:79:35,44:35:1256:44:1580:-118.71,0,-89.5639	1/1:138:1,136:1:36:136:4837:-431.888,-38.0027,0	0/1:151:83,68:83:2968:68:2440:-174.399,0,-221.898	0/1:71:44,27:44:1580:27:955:-64.8917,0,-121.118	1/1:131:0,131:0:0:131:4696:-422.8,-39.4349,0	0/1:41:22,19:22:784:19:680:-49.1869,0,-58.5417	1/1:91:0,91:0:0:91:3227:-290.651,-27.3937,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:10:5,5:5:180:5:167:-12.3481,0,-13.5418	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:3,1:3:108:1:29:-1.69554,0,-8.87105	1/1:313:1,312:1:36:312:11054:-991.168,-90.6241,0	0/1:50:19,31:19:672:31:1104:-84.6191,0,-45.7553	0/1:56:31,25:31:1104:25:899:-64.3733,0,-82.813	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:95:0,95:0:0:95:3386:-304.955,-28.5979,0	1/1:43:0,43:0:0:43:1535:-138.443,-12.9443,0	0/1:150:83,67:83:2941:67:2365:-167.953,0,-219.77	0/1:131:66,65:66:2352:65:2287:-166.656,0,-172.504	1/1:122:0,122:0:0:122:4305:-387.63,-36.7257,0	0/1:66:33,33:33:1184:33:1176:-86.2798,0,-87.0003	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:111:0,111:0:0:111:3942:-354.971,-33.4143,0	0/1:76:37,39:37:1328:39:1381:-101.708,0,-96.944	0/1:89:47,42:47:1688:42:1495:-108.052,0,-125.415	0/1:110:44,66:44:1580:66:2348:-178.466,0,-109.378	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:76:41,35:41:1460:35:1222:-87.3831,0,-108.818	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:110:1,109:1:36:109:3835:-341.746,-29.515,0	0/1:29:18,11:18:639:11:377:-25.5289,0,-49.1084	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:61:34,27:34:1220:27:964:-68.714,0,-91.744	1/1:124:1,123:1:32:123:4382:-391.353,-34.1284,0	0/1:3:1,2:1:32:2:63:-5.08006,0,-2.29622	0/1:70:32,38:32:1148:38:1349:-100.636,0,-82.5577	1/1:155:1,154:1:36:154:5481:-489.818,-43.0614,0	0/1:55:30,25:30:1076:25:887:-63.5915,0,-80.5962	1/1:50:0,50:0:0:50:1770:-159.582,-15.0515,0	0/1:106:47,59:47:1676:59:2116:-158.8,0,-119.218	1/1:100:3,97:3:108:97:3413:-297.31,-20.0278,0	0/1:35:12,23:12:432:23:828:-64.3081,0,-28.6851	0/1:62:34,28:34:1224:28:995:-71.2002,0,-91.8032	1/1:122:0,122:0:0:122:4344:-391.135,-36.7257,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:33:0,33:0:0:33:1163:-104.976,-9.93399,0	1/1:71:0,71:0:0:71:2532:-228.13,-21.3731,0	1/1:172:0,172:0:0:172:6112:-550.184,-51.7772,0	1/1:85:0,85:0:0:85:3043:-274.099,-25.5876,0	0/1:77:47,30:47:1680:30:1071:-73.5223,0,-128.308	0/1:72:40,32:40:1432:32:1148:-81.9557,0,-107.503	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:94:49,45:49:1760:45:1601:-116.082,0,-130.387	0/1:60:36,24:36:1296:24:846:-58.396,0,-98.8821	1/1:174:0,174:0:0:174:6176:-555.939,-52.3792,0	1/1:109:0,109:0:0:109:3872:-348.675,-32.8123,0	1/1:76:0,76:0:0:76:2704:-243.605,-22.8783,0	1/1:111:0,111:0:0:111:3956:-356.23,-33.4143,0	0/1:248:118,129:118:4195:129:4575:-337.353,0,-303.168	0/1:59:35,24:35:1248:24:856:-59.6003,0,-94.8641	0/1:94:49,45:49:1747:45:1603:-116.263,0,-129.217	0/1:87:41,46:41:1463:46:1645:-122.149,0,-105.776	0/1:38:18,20:18:644:20:716:-53.3286,0,-46.8515	0/1:97:45,52:45:1612:52:1856:-138.12,0,-116.17	0/1:141:85,56:85:3052:56:2000:-137.829,0,-232.464	1/1:101:0,101:0:0:101:3592:-323.486,-30.404,0	1/1:200:0,200:0:0:200:7093:-638.431,-60.206,0
chr10	19234486	.	C	G	168909	PASS	AB=0.481543;ABP=19.1223;AC=137;AF=0.728723;AN=188;AO=8061;CIGAR=1X;DP=10901;DPB=10901;DPRA=0;EPP=17403.2;EPPR=6113.58;GTI=0;LEN=1;MEANALT=1.09574;MQM=59.5899;MQMR=59.9636;NS=94;NUMALT=1;ODDS=7.65285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287072;QR=100923;RO=2830;RPL=8049;RPP=17403.2;RPPR=6113.58;RPR=12;RUN=1;SAF=0;SAP=17507.2;SAR=8061;SRF=0;SRP=6148.28;SRR=2830;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:25,12:25:892:12:423:-27.1516,0,-69.4616	1/1:218:0,217:0:0:217:7754:-697.494,-65.3235,0	1/1:153:0,153:0:0:153:5466:-491.903,-46.0576,0	0/1:225:124,101:124:4408:101:3604:-256.813,0,-329.161	0/1:84:45,39:45:1607:39:1400:-100.88,0,-119.633	0/1:60:30,30:30:1076:30:1076:-79.0829,0,-79.0911	0/1:174:77,97:77:2739:97:3429:-256.407,0,-194.371	1/1:207:0,207:0:0:207:7389:-664.938,-62.3132,0	0/1:112:49,63:49:1748:63:2251:-169.112,0,-123.889	0/1:49:11,38:11:396:38:1348:-106.867,0,-21.2323	1/1:61:0,61:0:0:61:2175:-196.003,-18.3628,0	0/1:77:44,33:44:1572:33:1164:-81.8876,0,-118.591	1/1:74:0,74:0:0:74:2643:-238.056,-22.2762,0	1/1:99:0,99:0:0:99:3522:-317.147,-29.802,0	1/1:76:0,76:0:0:76:2699:-243.118,-22.8783,0	0/1:60:29,31:29:1044:31:1104:-81.6042,0,-76.213	1/1:89:0,89:0:0:89:3179:-285.811,-26.7917,0	1/1:70:1,69:1:27:69:2464:-219.265,-18.3723,0	0/1:55:30,25:30:1076:25:890:-63.8413,0,-80.5962	0/1:231:107,124:107:3802:124:4444:-330.111,0,-272.746	0/1:176:97,79:97:3446:79:2815:-200.589,0,-257.371	1/1:110:0,110:0:0:110:3911:-352.082,-33.1133,0	0/1:181:101,80:101:3599:80:2854:-202.597,0,-269.628	1/1:133:5,128:5:180:128:4571:-394.783,-23.4849,0	0/1:88:51,37:51:1811:37:1297:-90.5156,0,-136.772	1/1:331:1,329:1:36:329:11746:-1053.37,-96.1015,0	0/1:226:118,108:118:4206:108:3855:-279.082,0,-310.689	0/1:32:14,18:14:504:18:631:-47.4781,0,-36.0651	1/1:366:0,365:0:0:365:13004:-1169.1,-109.876,0	0/1:151:66,85:66:2364:85:3027:-227.004,0,-167.563	1/1:180:0,180:0:0:180:6392:-574.868,-54.1854,0	1/1:19:0,19:0:0:19:676:-61.1588,-5.71957,0	0/1:14:11,3:11:392:3:99:-5.0174,0,-31.4037	1/1:12:0,12:0:0:12:432:-39.213,-3.61236,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:223:0,223:0:0:223:7922:-711.43,-67.1297,0	0/1:186:104,82:104:3723:82:2940:-208.787,0,-279.279	0/1:67:24,43:24:860:43:1536:-118.356,0,-57.5528	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:277:3,274:3:108:274:9731:-865.332,-73.3101,0	1/1:57:1,56:1:36:56:2008:-177.39,-13.5604,0	0/1:174:89,85:89:3179:85:3006:-218.349,0,-233.955	0/1:122:73,49:73:2608:49:1760:-121.954,0,-198.243	1/1:73:0,73:0:0:73:2585:-232.78,-21.9752,0	0/1:111:51,60:51:1801:60:2144:-159.813,0,-128.947	1/1:132:0,131:0:0:131:4699:-422.66,-39.4349,0	1/1:189:0,189:0:0:189:6708:-603.758,-56.8947,0	0/1:133:74,59:74:2635:59:2104:-149.558,0,-197.358	0/1:226:121,104:121:4331:104:3701:-265.186,0,-321.873	0/1:154:72,82:72:2568:82:2914:-216.123,0,-185.012	0/1:15:12,3:12:428:3:108:-5.55972,0,-34.3434	0/1:133:65,68:65:2303:68:2428:-178.726,0,-167.494	0/1:49:31,18:31:1104:18:644:-43.5368,0,-84.9202	1/1:37:0,37:0:0:37:1311:-118.288,-11.1381,0	1/1:205:0,205:0:0:205:7262:-653.569,-61.7112,0	0/1:55:31,21:31:1108:21:748:-51.6254,0,-84.0178	1/1:8:0,8:0:0:8:280:-25.5389,-2.40824,0	0/1:21:11,10:11:388:10:356:-26.0596,0,-28.9357	0/1:95:55,40:55:1960:40:1423:-99.7469,0,-148.078	1/1:89:0,89:0:0:89:3192:-287.496,-26.7917,0	0/1:5:3,2:3:108:2:72:-5.32911,0,-8.57002	0/1:192:111,81:111:3966:81:2844:-198.389,0,-299.33	1/1:271:0,271:0:0:271:9670:-870.209,-81.5791,0	0/1:71:33,38:33:1188:38:1352:-100.597,0,-85.8551	1/1:109:0,109:0:0:109:3898:-350.986,-32.8123,0	0/1:226:111,114:111:3943:114:4071:-298.478,0,-286.965	1/1:112:1,111:1:36:111:3944:-351.454,-30.1171,0	0/1:38:21,17:21:756:17:590:-41.9832,0,-56.9281	0/1:83:40,43:40:1432:43:1544:-114.256,0,-104.192	1/1:78:0,78:0:0:78:2787:-251.068,-23.4803,0	1/1:38:0,38:0:0:38:1327:-119.721,-11.4391,0	1/1:100:0,100:0:0:100:3559:-320.503,-30.103,0	1/1:61:0,61:0:0:61:2139:-192.558,-18.3628,0	1/1:276:0,276:0:0:276:9796:-881.016,-83.0843,0	1/1:159:0,159:0:0:159:5671:-510.411,-47.8638,0	0/1:162:82,80:82:2936:80:2838:-206.294,0,-215.707	0/1:162:96,66:96:3403:66:2348:-162.794,0,-257.72	0/1:23:16,7:16:572:7:252:-16.0913,0,-44.8897	0/1:137:62,75:62:2199:75:2682:-200.378,0,-156.934	0/1:142:73,69:73:2594:69:2460:-178.85,0,-190.962	1/1:254:1,253:1:36:253:9025:-808.464,-72.8633,0	1/1:110:0,110:0:0:110:3926:-353.153,-33.1133,0	1/1:74:0,74:0:0:74:2640:-237.838,-22.2762,0	1/1:86:0,86:0:0:86:3076:-277.032,-25.8886,0	0/1:156:73,82:73:2608:82:2918:-215.824,0,-187.949	0/1:46:23,23:23:824:23:824:-60.6196,0,-60.6183	0/1:82:47,35:47:1671:35:1238:-87.0302,0,-125.992	0/1:77:38,39:38:1368:39:1382:-101.375,0,-100.242	0/1:44:22,22:22:775:22:788:-57.9821,0,-56.8259	0/1:122:55,67:55:1972:67:2375:-177.253,0,-141.029	0/1:94:61,33:61:2183:33:1180:-78.2064,0,-168.438	1/1:127:0,127:0:0:127:4531:-407.935,-38.2308,0	1/1:103:0,103:0:0:103:3649:-328.612,-31.0061,0
chr10	19337375	.	G	A	10124.3	PASS	AB=0.45122;ABP=33.5168;AC=53;AF=0.288043;AN=184;AO=673;CIGAR=1X;DP=2894;DPB=2894;DPRA=0.868048;EPP=1464.41;EPPR=4823.68;GTI=3;LEN=1;MEANALT=1.01754;MQM=59.7117;MQMR=59.9649;NS=92;NUMALT=1;ODDS=3.16133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23757;QR=78035;RO=2220;RPL=0;RPP=1464.41;RPPR=4823.68;RPR=673;RUN=1;SAF=0;SAP=1464.41;SAR=673;SRF=0;SRP=4823.68;SRR=2220;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:2,8:2:72:8:280:-22.5257,0,-3.82642	0/0:31:30,1:30:1072:1:36:0,-5.73365,-93.1909	0/0:48:48,0:48:1677:0:0:0,-14.4494,-151.197	0/1:66:35,31:35:1211:31:1083:-77.9073,0,-89.419	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:18:12,6:12:428:6:212:-14.0063,0,-33.4403	0/0:58:58,0:58:1995:0:0:0,-17.4597,-179.819	0/1:44:30,14:30:1040:14:500:-32.0732,0,-80.6612	0/1:24:12,12:12:432:12:419:-30.818,0,-31.9965	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:41:23,18:23:816:18:644:-45.9484,0,-61.4195	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:20:20,0:20:694:0:0:0,-6.0206,-62.7804	0/0:22:22,0:22:745:0:0:0,-6.62266,-67.3631	0/1:23:5,18:5:171:18:644:-51.3669,0,-8.80176	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:13:8,5:8:284:5:176:-12.2716,0,-21.99	0/1:45:23,22:23:828:22:780:-56.9767,0,-61.2978	0/1:43:27,16:27:918:16:576:-38.7737,0,-69.982	0/0:35:35,0:35:1198:0:0:0,-10.536,-108.118	0/1:26:17,9:17:597:9:324:-21.6791,0,-46.2293	0/1:25:22,3:22:779:3:104:-2.17706,0,-62.9063	0/1:52:30,22:30:1064:22:770:-53.9658,0,-80.4181	0/0:96:96,0:96:3368:0:0:0,-28.8989,-303.336	0/1:83:49,34:49:1722:34:1186:-82.0553,0,-130.276	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.49714	0/0:83:83,0:83:2945:0:0:0,-24.9855,-265.284	0/1:27:18,9:18:620:9:324:-21.378,0,-47.9923	0/0:27:27,0:27:939:0:0:0,-8.12781,-84.8227	.:.:.:.:.:.:.:.	0/1:11:6,5:6:207:5:180:-13.2407,0,-15.6556	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:8:5,3:5:180:3:99:-6.82834,0,-14.1438	0/0:57:57,0:57:2027:0:0:0,-17.1587,-182.702	0/1:63:23,40:23:805:40:1428:-109.853,0,-53.8026	0/1:12:6,6:6:201:6:205:-15.171,0,-14.8047	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:52:51,1:51:1754:1:21:0,-13.5642,-156.05	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/1:65:36,29:36:1270:29:1027:-73.1752,0,-95.0344	0/1:21:12,9:12:424:9:320:-22.8207,0,-32.1748	0/0:14:14,0:14:474:0:0:0,-4.21442,-42.9822	0/1:37:19,18:19:680:18:613:-44.3503,0,-50.3911	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:56:56,0:56:1966:0:0:0,-16.8577,-177.214	0/1:38:20,18:20:716:18:640:-46.4902,0,-53.3286	0/1:41:21,20:21:737:20:708:-51.7034,0,-54.3084	0/1:43:27,16:27:941:16:553:-37.1459,0,-72.0574	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/1:43:28,15:28:1004:15:536:-35.6305,0,-77.7316	0/1:20:11,9:11:392:9:324:-23.4853,0,-29.5995	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:65:65,0:65:2278:0:0:0,-19.5669,-205.211	0/1:29:11,18:11:384:18:644:-49.5607,0,-26.1648	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:24:14,10:14:491:10:352:-24.7935,0,-37.2964	0/0:47:45,1:45:1577:1:36:0,-10.534,-138.692	.:.:.:.:.:.:.:.	0/1:35:19,16:19:661:16:576:-41.638,0,-49.2756	0/0:73:73,0:73:2578:0:0:0,-21.9752,-232.267	0/1:19:11,8:11:377:8:279:-19.728,0,-28.5384	0/0:36:36,0:36:1275:0:0:0,-10.8371,-114.982	0/1:40:22,18:22:784:18:635:-45.4358,0,-58.8427	0/0:67:66,1:66:2333:1:36:0,-16.5707,-206.63	0/1:12:6,6:6:201:6:207:-15.122,0,-14.8047	0/1:20:12,8:12:432:8:284:-19.8745,0,-33.2006	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:53:53,0:53:1852:0:0:0,-15.9546,-166.957	0/0:44:44,0:44:1554:0:0:0,-13.2453,-140.142	0/0:49:49,0:49:1688:0:0:0,-14.7505,-152.203	0/0:83:83,0:83:2943:0:0:0,-24.9855,-265.105	0/1:41:25,16:25:884:16:558:-38.2042,0,-67.5361	0/1:37:21,16:21:756:16:572:-40.6753,0,-57.2291	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:16:10,6:10:352:6:216:-14.974,0,-27.2017	0/1:29:18,11:18:640:11:373:-25.1654,0,-49.1994	0/0:52:52,0:52:1834:0:0:0,-15.6536,-165.339	0/0:28:28,0:28:954:0:0:0,-8.42884,-86.163	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/1:34:17,17:17:608:17:584:-42.6434,0,-44.817	0/1:9:2,7:2:72:7:233:-18.5697,0,-4.12745	0/1:25:16,9:16:552:9:309:-20.615,0,-42.4771	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1277	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:37:24,13:24:841:13:459:-30.506,0,-64.8683	0/1:29:7,22:7:252:22:784:-62.1525,0,-14.2991	0/0:22:22,0:22:760:0:0:0,-6.62266,-68.7159	0/0:20:19,1:19:665:1:36:0,-2.42232,-56.5745
chr10	19430694	.	C	T	84833.1	PASS	AB=0.487902;ABP=6.84582;AC=135;AF=0.725806;AN=186;AO=4093;CIGAR=1X;DP=5642;DPB=5642;DPRA=0;EPP=8890.85;EPPR=3269.58;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.4437;MQMR=59.4134;NS=93;NUMALT=1;ODDS=1.88747;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146143;QR=55229;RO=1548;RPL=0;RPP=8890.85;RPPR=3269.58;RPR=4093;RUN=1;SAF=0;SAP=8890.85;SAR=4093;SRF=0;SRP=3364.45;SRR=1548;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:30,19:30:1072:19:676:-46.3898,0,-82.0335	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:66:2,64:2:72:64:2276:-197.763,-13.0313,0	0/1:110:60,50:60:2148:50:1790:-128.217,0,-160.471	0/1:35:19,16:19:680:16:576:-41.6251,0,-50.9931	0/1:19:15,4:15:532:4:144:-7.59405,0,-42.4526	0/1:52:27,24:27:951:24:847:-60.8337,0,-70.1868	1/1:51:0,51:0:0:51:1817:-163.62,-15.3525,0	0/1:87:51,36:51:1791:36:1262:-87.6779,0,-135.075	0/1:27:16,11:16:576:11:396:-27.4235,0,-44.0472	1/1:51:0,51:0:0:51:1832:-165.13,-15.3525,0	0/1:88:48,40:48:1708:40:1440:-103.337,0,-127.282	1/1:73:0,73:0:0:73:2612:-235.271,-21.9752,0	1/1:57:0,57:0:0:57:2044:-184.227,-17.1587,0	1/1:63:0,63:0:0:63:2256:-203.211,-18.9649,0	0/1:48:26,22:26:936:22:788:-56.7907,0,-69.9196	1/1:36:0,36:0:0:36:1292:-116.559,-10.8371,0	1/1:25:0,25:0:0:25:877:-79.2337,-7.52575,0	0/1:42:17,25:17:608:25:896:-68.3056,0,-42.4055	0/1:130:61,69:61:2180:69:2476:-183.908,0,-157.315	0/1:84:44,40:44:1576:40:1406:-101.533,0,-116.833	1/1:73:0,73:0:0:73:2589:-233.225,-21.9752,0	0/1:53:22,31:22:784:31:1108:-83.9877,0,-54.9107	1/1:17:0,17:0:0:17:597:-54.0561,-5.11751,0	0/1:41:21,20:21:752:20:716:-52.4209,0,-55.6594	1/1:141:0,141:0:0:141:5044:-454.008,-42.4452,0	0/1:116:55,61:55:1972:61:2173:-160.883,0,-142.79	0/1:20:7,13:7:248:13:468:-36.4298,0,-16.6389	1/1:165:1,164:1:36:164:5878:-525.421,-46.0717,0	0/1:50:26,24:26:932:24:860:-62.6703,0,-69.129	1/1:60:0,60:0:0:60:2155:-194.199,-18.0618,0	1/1:14:0,14:0:0:14:504:-45.6853,-4.21442,0	0/1:8:2,6:2:72:6:201:-16.0088,0,-4.42848	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:213:-19.4833,-1.80618,0	0/1:19:8,11:8:288:11:392:-29.9005,0,-20.3334	1/1:172:0,172:0:0:172:6165:-554.699,-51.7772,0	0/1:124:63,61:63:2245:61:2174:-158.309,0,-164.896	0/1:51:27,24:27:964:24:851:-61.5406,0,-71.6916	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:43:0,43:0:0:43:1536:-138.517,-12.9443,0	1/1:38:0,38:0:0:38:1351:-121.87,-11.4391,0	0/1:97:67,30:67:2373:30:1061:-66.5829,0,-183.83	0/1:42:20,22:20:720:22:792:-58.9624,0,-52.4832	1/1:37:0,37:0:0:37:1328:-119.021,-11.1381,0	0/1:79:37,42:37:1332:42:1504:-111.169,0,-96.3969	1/1:62:0,62:0:0:62:2202:-198.355,-18.6639,0	1/1:92:0,92:0:0:92:3300:-297.139,-27.6948,0	0/1:91:47,44:47:1688:44:1580:-115.005,0,-124.625	0/1:79:38,41:38:1364:41:1467:-108.539,0,-99.277	0/1:54:31,23:31:1108:23:824:-58.2259,0,-83.7663	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/1:63:31,32:31:1107:32:1148:-84.6568,0,-80.9529	0/1:53:28,25:28:1000:25:892:-64.6335,0,-74.3508	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:62:0,62:0:0:62:2216:-199.663,-18.6639,0	0/1:26:17,9:17:612:9:324:-21.672,0,-47.5867	1/1:7:0,7:0:0:7:252:-23.028,-2.10721,0	0/1:15:6,9:6:208:9:324:-24.9886,0,-14.5427	0/1:56:33,23:33:1184:23:809:-56.2706,0,-89.9838	1/1:85:0,85:0:0:85:3008:-270.294,-25.5876,0	.:.:.:.:.:.:.:.	0/1:110:51,59:51:1802:59:2101:-156.169,0,-129.304	1/1:78:0,78:0:0:78:2796:-251.804,-23.4803,0	0/1:46:29,17:29:1027:17:612:-41.5661,0,-78.7597	1/1:55:0,55:0:0:55:1972:-177.669,-16.5567,0	0/1:138:59,79:59:2093:79:2816:-211.655,0,-147.065	1/1:83:0,83:0:0:83:2930:-263.771,-24.9855,0	0/1:50:24,26:24:860:26:936:-69.4987,0,-62.4424	0/1:27:10,17:10:360:17:612:-47.2774,0,-24.6165	1/1:57:0,57:0:0:57:2040:-183.87,-17.1587,0	1/1:9:0,9:0:0:9:315:-28.6846,-2.70927,0	1/1:90:0,90:0:0:90:3220:-290.01,-27.0927,0	1/1:56:0,56:0:0:56:2012:-181.337,-16.8577,0	1/1:163:0,163:0:0:163:5830:-524.242,-49.0679,0	1/1:103:1,102:1:36:102:3647:-324.811,-27.4078,0	0/1:81:48,33:48:1716:33:1184:-82.4596,0,-130.342	0/1:45:20,25:20:720:25:900:-67.7364,0,-51.5627	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:32:16,16:16:572:16:565:-41.5367,0,-42.163	0/1:54:29,25:29:1036:25:896:-64.6811,0,-77.2901	1/1:136:0,136:0:0:136:4852:-436.723,-40.9401,0	1/1:37:0,37:0:0:37:1320:-119.071,-11.1381,0	1/1:71:0,71:0:0:71:2533:-228.148,-21.3731,0	1/1:28:0,28:0:0:28:1001:-90.3542,-8.42884,0	0/1:103:55,48:55:1959:48:1704:-122.633,0,-145.576	0/1:18:8,10:8:284:10:352:-26.5914,0,-20.4848	0/1:56:27,29:27:951:29:1036:-76.6881,0,-69.046	0/1:79:38,41:38:1351:41:1468:-108.627,0,-98.0912	0/1:51:25,26:25:888:26:924:-68.1205,0,-64.8813	0/1:131:55,76:55:1963:76:2709:-204.593,0,-137.505	0/1:69:41,28:41:1468:28:985:-68.1881,0,-111.631	1/1:65:0,65:0:0:65:2313:-208.42,-19.567,0	1/1:64:0,64:0:0:64:2281:-205.539,-19.2659,0
chr10	19430700	.	AGTC	GGTC,GGTT	123594	PASS	AB=0.476974,0.517434;ABP=17.0106,11.0362;AC=135,51;AF=0.725806,0.274194;AN=186;AO=4057,1576;CIGAR=1X3M,1X2M1X;DP=5672;DPB=5672;DPRA=0,1.03265;EPP=7957.24,3128;EPPR=5.18177;GTI=0;LEN=1,4;MEANALT=1.94624,2.35849;MQM=59.5014,59.4226;MQMR=60;NS=93;NUMALT=2;ODDS=2.73828;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=143460,55187;QR=36;RO=1;RPL=3956,1541;RPP=7957.24,3128;RPPR=5.18177;RPR=101,35;RUN=1,1;SAF=0,0;SAP=8812.67,3425.25;SAR=4057,1576;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:49:0,18,30:0:0:18,30:623,1053:-136.362,-85.7587,-80.3402,-50.6667,0,-41.6358	1/1:25:0,25,0:0:0:25,0:884,0:-79.8784,-7.52575,0,-79.8784,-7.52575,-79.8784	1/1:67:0,65,2:0:0:65,2:2304,72:-206.865,-19.567,0,-200.99,-13.3323,-200.388	1/2:109:0,46,63:0:0:46,63:1644,2188:-312.209,-178.217,-164.369,-134.346,0,-115.381	1/2:31:0,15,16:0:0:15,16:532,571:-90.2487,-46.9066,-42.3912,-43.6976,0,-38.8812	1/2:18:0,4,14:0:0:4,14:144,498:-52.6252,-40.8744,-39.6703,-12.1095,0,-7.89508	1/2:53:0,23,30:0:0:23,30:803,1059:-151.894,-86.5842,-79.6605,-65.66,0,-56.6291	1/1:51:0,51,0:0:0:51,0:1796,0:-161.893,-15.3525,0,-161.893,-15.3525,-161.893	1/2:90:0,36,54:0:0:36,54:1271,1864:-255.063,-151.57,-140.733,-103.843,0,-87.587	1/2:27:0,11,16:0:0:11,16:390,567:-78.1588,-46.5449,-43.2336,-31.9673,0,-27.1508	1/1:50:0,49,0:0:0:49,0:1731,0:-155.773,-14.7505,0,-155.773,-14.7505,-155.773	1/2:89:0,40,49:0:0:40,49:1402,1719:-254.256,-140.242,-128.201,-114.365,0,-99.6142	1/1:73:0,71,0:0:0:71,0:2504,0:-225.325,-21.3731,0,-225.325,-21.3731,-225.325	1/1:55:0,55,0:0:0:55,0:1934,0:-174.331,-16.5567,0,-174.331,-16.5567,-174.331	1/1:63:0,62,0:0:0:62,0:2207,0:-198.608,-18.6639,0,-198.608,-18.6639,-198.608	1/2:48:0,21,26:0:0:21,26:735,914:-134.249,-74.4531,-68.1315,-59.849,0,-52.0222	1/1:35:0,35,0:0:0:35,0:1227,0:-110.709,-10.5361,0,-110.709,-10.5361,-110.709	1/1:25:0,23,0:0:0:23,0:824,0:-74.1294,-6.92369,0,-74.1294,-6.92369,-74.1294	1/2:42:0,23,18:0:0:23,18:819,638:-118.785,-52.0386,-45.1149,-66.8167,0,-61.3982	1/2:133:0,69,62:0:0:69,62:2444,2187:-377.181,-178.094,-157.323,-199.119,0,-180.455	1/2:85:1,38,45:1:36:38,45:1355,1559:-233.94,-123.791,-115.29,-107.547,0,-96.9381	1/1:72:0,72,0:0:0:72,0:2530,0:-227.919,-21.6742,0,-227.919,-21.6742,-227.919	1/2:56:0,33,23:0:0:33,23:1176,820:-162.951,-67.1815,-57.2475,-96.1251,0,-89.2014	1/1:17:0,17,0:0:0:17,0:595,0:-53.8721,-5.11751,0,-53.8721,-5.11751,-53.8721	1/2:40:0,19,20:0:0:19,20:669,709:-112.233,-57.7718,-52.0523,-54.4742,0,-48.4536	1/1:148:0,148,0:0:0:148,0:5214,0:-469.345,-44.5524,0,-469.345,-44.5524,-469.345	1/2:118:0,60,58:0:0:60,58:2144,2044:-341.525,-166.751,-148.689,-175.128,0,-157.669	1/2:19:0,12,7:0:0:12,7:417,252:-54.8051,-20.9171,-17.3047,-34.2432,0,-32.136	1/1:170:0,166,1:0:0:166,1:5900,35:-530.703,-49.971,0,-527.855,-47.1066,-527.554	1/2:48:0,22,26:0:0:22,26:792,912:-139.18,-74.5528,-67.9302,-64.983,0,-57.1562	1/1:62:0,62,0:0:0:62,0:2199,0:-198.153,-18.6639,0,-198.153,-18.6639,-198.153	1/1:13:0,13,0:0:0:13,0:452,0:-40.9983,-3.91339,0,-40.9983,-3.91339,-40.9983	1/2:9:0,7,2:0:0:7,2:252,72:-26.7966,-6.23466,-4.12745,-20.9217,0,-20.3197	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:7:0,7,0:0:0:7,0:239,0:-21.7152,-2.10721,0,-21.7152,-2.10721,-21.7152	1/2:19:0,11,8:0:0:11,8:392,282:-55.0549,-23.0985,-19.7871,-32.3087,0,-29.9005	1/1:169:0,166,0:0:0:166,0:5893,0:-529.878,-49.971,0,-529.878,-49.971,-529.878	1/2:130:0,64,65:0:0:64,65:2269,2259:-368.187,-183.625,-164.359,-184.592,0,-165.025	1/2:49:0,22,26:0:0:22,26:771,918:-137.449,-74.7247,-68.102,-62.7168,0,-54.89	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:42:0,42,0:0:0:42,0:1495,0:-134.825,-12.6433,0,-134.825,-12.6433,-134.825	1/1:38:0,38,0:0:0:38,0:1333,0:-120.127,-11.4391,0,-120.127,-11.4391,-120.127	1/2:98:0,31,67:0:0:31,67:1068,2331:-276.224,-189.494,-180.163,-87.0743,0,-66.9053	1/2:43:0,22,21:0:0:22,21:779,755:-125.406,-61.9531,-55.3304,-63.8094,0,-57.4878	1/1:37:0,37,0:0:0:37,0:1298,0:-116.827,-11.1381,0,-116.827,-11.1381,-116.827	1/2:79:0,39,38:0:0:39,38:1367,1343:-220.509,-109.406,-97.666,-111.132,0,-99.693	1/1:62:0,58,0:0:0:58,0:2065,0:-185.765,-17.4597,0,-185.765,-17.4597,-185.765	1/1:91:0,90,0:0:0:90,0:3199,0:-287.779,-27.0927,0,-287.779,-27.0927,-287.779	1/2:94:0,44,49:0:0:44,49:1552,1674:-262.244,-135.869,-122.624,-126.45,0,-111.699	1/2:79:0,41,38:0:0:41,38:1449,1349:-228.27,-110.269,-97.9272,-118.354,0,-106.915	1/2:54:0,23,31:0:0:23,31:813,1097:-155.911,-89.6988,-82.7751,-66.5653,0,-57.2334	1/2:10:0,5,5:0:0:5,5:180,179:-29.6433,-14.9552,-13.4501,-15.0469,0,-13.5418	1/2:68:0,33,35:0:0:33,35:1175,1209:-194.316,-98.5516,-88.6176,-96.1148,0,-85.5787	1/2:53:0,25,28:0:0:25,28:884,972:-151.344,-79.3538,-71.828,-72.341,0,-63.9122	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:62:0,62,0:0:0:62,0:2191,0:-197.411,-18.6639,0,-197.411,-18.6639,-197.411	1/2:27:0,9,17:0:0:9,17:320,609:-75.8158,-49.7408,-47.0316,-26.1423,0,-21.0248	1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chr10	20202073	.	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chr10	20576810	.	A	G	114314	PASS	AB=0.507979;ABP=5.0549;AC=137;AF=0.728723;AN=188;AO=5517;CIGAR=1X;DP=7352;DPB=7352;DPRA=0;EPP=11974.3;EPPR=3901.19;GTI=0;LEN=1;MEANALT=1.04255;MQM=53.7803;MQMR=59.4391;NS=94;NUMALT=1;ODDS=9.12664;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196537;QR=65036;RO=1831;RPL=1;RPP=11974.3;RPPR=3901.19;RPR=5516;RUN=1;SAF=5517;SAP=11983;SAR=0;SRF=1831;SRP=3978.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:7,9:7:244:9:311:-22.9547,0,-17.4829	1/1:127:0,127:0:0:127:4501:-402.656,-38.2308,0	1/1:68:0,68:0:0:68:2431:-218.091,-20.47,0	0/1:153:65,88:65:2282:88:3109:-232.796,0,-159.575	0/1:89:46,43:46:1624:43:1540:-111.045,0,-119.253	0/1:75:38,37:38:1352:37:1315:-95.7937,0,-99.1167	0/1:116:66,50:66:2340:50:1758:-122.989,0,-175.841	1/1:177:0,177:0:0:177:6311:-562.269,-53.2823,0	0/1:81:38,43:38:1325:43:1529:-113.116,0,-95.1409	0/1:133:68,65:68:2420:65:2309:-166.663,0,-177.888	1/1:40:0,40:0:0:40:1436:-128.095,-12.0412,0	0/1:49:24,25:24:852:25:900:-66.3402,0,-62.2408	1/1:57:0,57:0:0:57:2028:-180.754,-17.1587,0	1/1:56:1,55:1:36:55:1957:-171.523,-13.2594,0	1/1:42:0,42:0:0:42:1500:-134.098,-12.6433,0	0/1:45:31,14:31:1112:14:500:-31.7242,0,-86.7151	1/1:105:0,105:0:0:105:3754:-336.527,-31.6082,0	1/1:49:0,49:0:0:49:1752:-157.108,-14.7505,0	0/1:26:15,11:15:540:11:396:-27.228,0,-41.1098	0/1:200:95,105:95:3387:105:3740:-274.826,0,-244.546	0/1:129:56,73:56:1985:73:2587:-192.74,0,-140.031	1/1:82:0,82:0:0:82:2938:-264.423,-24.6845,0	0/1:26:11,15:11:396:15:540:-40.9902,0,-28.1536	1/1:123:6,117:6:216:117:4172:-354.798,-17.2362,0	0/1:68:36,32:36:1284:32:1144:-82.6228,0,-95.0084	1/1:227:0,227:0:0:227:8077:-725.281,-68.3338,0	0/1:179:86,92:86:3072:92:3273:-239.586,0,-222.356	0/1:24:11,13:11:392:13:451:-33.4581,0,-28.3861	1/1:210:0,210:0:0:210:7509:-673.715,-63.2163,0	0/1:75:33,42:33:1169:42:1496:-111.551,0,-82.8885	1/1:106:0,106:0:0:106:3742:-335.536,-31.9092,0	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:15:7,8:7:252:8:288:-21.1752,0,-18.5135	1/1:6:0,6:0:0:6:216:-19.7351,-1.80618,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:8:6,2:6:216:2:72:-4.41129,0,-17.3823	1/1:141:0,141:0:0:141:5007:-449.677,-42.4452,0	0/1:114:50,64:50:1765:64:2284:-170.517,0,-124.309	0/1:45:17,28:17:608:28:980:-74.7501,0,-41.4798	1/1:3:0,3:0:0:3:108:-10.0609,-0.90309,0	1/1:128:3,125:3:108:125:4472:-391.709,-28.4567,0	1/1:24:0,24:0:0:24:860:-77.3631,-7.22472,0	0/1:91:43,48:43:1528:48:1708:-126.026,0,-110.395	0/1:61:28,33:28:1004:33:1176:-87.7051,0,-72.313	1/1:62:0,62:0:0:62:2208:-197.659,-18.6639,0	0/1:56:27,29:27:964:29:1044:-77.243,0,-70.2123	1/1:125:0,125:0:0:125:4472:-399.437,-37.6288,0	1/1:173:2,171:2:72:171:6031:-533.256,-45.2415,0	0/1:71:37,34:37:1312:34:1196:-86.3045,0,-96.9422	0/1:138:71,67:71:2504:67:2355:-169.527,0,-183.674	0/1:116:51,64:51:1808:64:2262:-168.213,0,-128.024	0/1:10:7,3:7:252:3:108:-6.95028,0,-20.0187	0/1:91:41,50:41:1468:50:1784:-133,0,-104.985	0/1:20:10,10:10:352:10:360:-26.7072,0,-25.9976	1/1:7:0,7:0:0:7:252:-22.9711,-2.10721,0	1/1:122:1,120:1:36:120:4266:-379.042,-33.1859,0	0/1:17:7,10:7:248:10:360:-27.434,0,-17.5467	1/1:4:0,4:0:0:4:144:-13.3084,-1.20412,0	0/1:9:5,4:5:180:4:144:-10.6006,0,-13.8428	0/1:109:65,44:65:2320:44:1580:-109.254,0,-176.226	1/1:77:0,77:0:0:77:2725:-244.863,-23.1793,0	0/1:6:4,2:4:144:2:68:-4.64808,0,-11.505	0/1:142:80,62:80:2856:62:2220:-157.149,0,-214.516	1/1:197:0,197:0:0:197:7032:-630.059,-59.3029,0	0/1:77:31,46:31:1104:46:1648:-124.854,0,-76.4913	1/1:71:0,71:0:0:71:2509:-225.507,-21.3731,0	0/1:86:48,38:48:1681:38:1349:-95.4207,0,-125.596	1/1:82:1,81:1:36:81:2869:-254.317,-21.0862,0	0/1:30:12,18:12:428:18:648:-49.2628,0,-29.8279	0/1:50:24,26:24:844:26:936:-69.2954,0,-60.8479	1/1:71:0,71:0:0:71:2530:-227.572,-21.3731,0	1/1:13:0,13:0:0:13:468:-42.3217,-3.91339,0	1/1:35:0,35:0:0:35:1233:-110.888,-10.5361,0	1/1:48:0,48:0:0:48:1724:-153.769,-14.4494,0	1/1:140:0,140:0:0:140:4967:-445.563,-42.1442,0	1/1:112:0,112:0:0:112:4005:-359.436,-33.7154,0	0/1:161:73,88:73:2596:88:3160:-234.874,0,-185.373	0/1:110:64,46:64:2269:46:1644:-114.184,0,-171.358	0/1:9:6,3:6:212:3:108:-7.34057,0,-16.7131	0/1:93:45,48:45:1585:48:1724:-126.189,0,-114.931	0/1:106:39,67:39:1377:67:2404:-183.826,0,-92.3093	1/1:201:0,200:0:0:200:7133:-640.84,-60.206,0	1/1:65:0,65:0:0:65:2328:-209.044,-19.567,0	1/1:37:0,37:0:0:37:1311:-118.003,-11.1381,0	1/1:60:0,60:0:0:60:2140:-191.559,-18.0618,0	0/1:117:52,65:52:1852:65:2324:-173.954,0,-131.628	0/1:29:14,15:14:495:15:536:-39.544,0,-36.1532	0/1:63:31,32:31:1104:32:1146:-83.9693,0,-80.4864	0/1:38:17,21:17:612:21:748:-55.6658,0,-43.9661	0/1:27:17,10:17:600:10:360:-23.7069,0,-46.1942	0/1:41:21,20:21:748:20:716:-51.2025,0,-55.3031	0/1:57:41,16:41:1468:16:570:-34.3787,0,-115.257	1/1:77:0,77:0:0:77:2747:-246.444,-23.1793,0	1/1:101:0,101:0:0:101:3620:-324.975,-30.404,0
chr10	20577339	.	A	T	15473.2	PASS	AB=0.482112;ABP=15.7511;AC=50;AF=0.268817;AN=186;AO=2227;CIGAR=1X;DP=9071;DPB=9071;DPRA=1.33361;EPP=4795.55;EPPR=14834.2;GTI=2;LEN=1;MEANALT=1.0339;MQM=25.3404;MQMR=59.5561;NS=93;NUMALT=1;ODDS=0.887174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79927;QR=242427;RO=6842;RPL=2222;RPP=4795.55;RPPR=14825.5;RPR=5;RUN=1;SAF=2227;SAP=4838.88;SAR=0;SRF=6841;SRP=14851.5;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:114:58,55:58:2049:55:1980:-91.8704,0,-149.351	0/0:60:60,0:60:2086:0:0:0,-18.0618,-187.997	0/0:157:156,1:156:5520:1:36:0,-43.6725,-493.269	0/1:219:133,86:133:4694:86:3096:-125.09,0,-356.563	0/1:108:54,54:54:1932:54:1936:-87.7916,0,-141.624	0/1:44:29,15:29:1032:15:540:-21.2173,0,-79.948	0/1:38:19,19:19:676:19:676:-30.9089,0,-49.6731	0/0:228:228,0:228:8093:0:0:0,-68.6348,-728.23	0/1:113:55,58:55:1940:58:2084:-99.5867,0,-140.212	0/1:81:39,42:39:1369:42:1504:-68.7759,0,-99.1002	0/0:24:24,0:24:837:0:0:0,-7.22472,-75.6373	0/1:79:43,36:43:1511:36:1292:-59.159,0,-112.493	0/0:52:52,0:52:1832:0:0:0,-15.6536,-165.143	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.301	0/0:48:48,0:48:1708:0:0:0,-14.4494,-153.978	0/1:53:30,23:30:1072:23:824:-35.5648,0,-80.8272	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1143	0/1:7:2,5:2:68:5:180:-10.6145,0,-4.3505	0/1:279:150,129:150:5302:129:4624:-202.33,0,-393.282	0/1:171:101,70:101:3604:70:2502:-105.208,0,-273.077	0/0:226:226,0:226:8047:0:0:0,-68.0328,-723.82	0/1:200:87,113:87:3104:113:4064:-190.796,0,-219.235	0/0:84:84,0:84:2973:0:0:0,-25.2865,-267.709	0/1:77:41,36:41:1460:36:1287:-56.9654,0,-108.499	0/0:279:278,1:278:9771:1:36:0,-80.4086,-875.624	0/1:222:105,117:105:3729:117:4212:-193.339,0,-268.93	0/1:41:13,28:13:468:28:996:-50.1188,0,-30.0985	0/0:300:300,0:300:10643:0:0:0,-90.309,-957.646	0/1:120:80,40:80:2818:40:1432:-53.0149,0,-217.722	0/0:121:121,0:121:4286:0:0:0,-36.4246,-385.893	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:9:5,4:5:180:4:140:-6.287,0,-13.8365	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:168:168,0:168:5997:0:0:0,-50.573,-539.38	0/1:174:98,76:98:3481:76:2715:-115.969,0,-261.123	0/1:20:11,9:11:392:9:324:-14.9608,0,-29.583	.:.:.:.:.:.:.:.	0/0:37:36,1:36:1288:1:36:0,-8.6712,-113.746	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:206:110,96:110:3881:96:3452:-151.409,0,-287.148	0/1:44:21,23:21:735:23:828:-38.0663,0,-53.2257	0/0:58:58,0:58:2052:0:0:0,-17.4597,-184.936	0/1:75:37,38:37:1313:38:1359:-61.9591,0,-95.8924	0/0:180:179,1:179:6321:1:36:0,-50.7978,-565.463	0/0:207:205,2:205:7247:2:72:0,-56.7908,-646.486	0/1:67:29,38:29:1032:38:1368:-64.5287,0,-73.0084	0/1:94:41,53:41:1441:53:1881:-88.3682,0,-101.687	0/1:68:36,32:36:1277:32:1152:-50.5673,0,-94.3827	1/1:5:0,5:0:0:5:180:-11.4322,-1.50515,0	0/1:172:77,94:77:2709:94:3376:-164.806,0,-192.217	0/1:68:43,25:43:1506:25:900:-35.112,0,-115.341	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98315	0/0:174:174,0:174:6129:0:0:0,-52.3792,-551.601	0/1:17:6,11:6:201:11:388:-19.4685,0,-13.2995	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:12:6,6:6:216:6:216:-9.95562,0,-16.1603	0/1:62:38,24:38:1348:24:860:-34.8227,0,-102.956	0/0:68:68,0:68:2415:0:0:0,-20.47,-216.486	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:245:141,104:141:4982:104:3740:-157.323,0,-374.651	0/0:285:284,1:284:10031:1:36:0,-83.3266,-899.787	0/1:49:32,17:32:1136:17:599:-22.8803,0,-87.7984	0/0:133:133,0:133:4687:0:0:0,-40.037,-421.354	0/1:160:77,83:77:2709:83:2980:-136.443,0,-195.835	0/0:129:127,2:127:4470:2:72:0,-34.1457,-397.732	0/1:10:7,3:7:252:3:108:-3.72153,0,-20.0079	0/1:50:27,23:27:964:23:828:-38.1696,0,-72.009	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.356	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.0447	0/0:84:84,0:84:2976:0:0:0,-25.2865,-268.017	0/0:85:85,0:85:3025:0:0:0,-25.5875,-272.264	0/0:227:226,1:226:8045:1:36:0,-64.7473,-719.922	0/0:160:159,1:159:5653:1:36:0,-44.8187,-505.493	0/1:186:100,86:100:3536:86:3092:-142.433,0,-262.424	0/1:86:46,40:46:1632:40:1436:-67.0463,0,-121.28	0/1:7:1,6:1:36:6:216:-11.9657,0,-1.49106	0/1:139:53,86:53:1865:86:3092:-148.874,0,-126.28	0/1:146:86,60:86:3064:60:2156:-94.2584,0,-232.015	0/0:310:310,0:310:11060:0:0:0,-93.3193,-994.264	0/0:60:60,0:60:2115:0:0:0,-18.0618,-190.346	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.858	0/0:36:36,0:36:1264:0:0:0,-10.8371,-114.009	0/1:124:56,68:56:1992:68:2444:-113.683,0,-142.17	0/1:18:6,12:6:216:12:432:-22.4714,0,-14.372	0/1:85:37,48:37:1320:48:1724:-84.6651,0,-93.4899	0/1:63:28,35:28:996:35:1260:-61.8902,0,-70.99	0/1:18:12,6:12:428:6:216:-8.14944,0,-33.4403	0/1:78:44,34:44:1540:34:1220:-52.3782,0,-115.383	0/1:66:22,44:22:788:44:1584:-77.3843,0,-51.3764	0/0:172:172,0:172:6121:0:0:0,-51.7772,-550.615	0/0:84:83,1:83:2948:1:36:0,-22.8196,-263.075
chr10	20577346	.	TTA	TTG,GTG	181384	PASS	AB=0.528258,0.469844;ABP=35.9002,40.4666;AC=136,50;AF=0.731183,0.268817;AN=186;AO=7217,2242;CIGAR=2M1X,1X1M1X;DP=9478;DPB=9478;DPRA=20.5935,1.09637;EPP=15674.5,4871.45;EPPR=0;GTI=4;LEN=1,3;MEANALT=1.76087,2.16071;MQM=59.5993,25.2908;MQMR=0;NS=93;NUMALT=2;ODDS=0.0483108;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=257566,79248;QR=0;RO=0;RPL=7216,2242;RPP=15665.8,4871.45;RPPR=0;RPR=1,0;RUN=1,1;SAF=7216,2242;SAP=15665.8,4871.45;SAR=1,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:117:0,61,56:0:0:61,56:2183,2006:-289.813,-111.769,-93.4058,-178.348,0,-161.49	1/1:63:0,63,0:0:0:63,0:2226,0:-200.593,-18.9649,0,-200.593,-18.9649,-200.593	1/1:173:0,173,0:0:0:173,0:6161,0:-554.494,-52.0782,0,-554.494,-52.0782,-554.494	1/2:224:0,138,86:0:0:138,86:4924,3061:-566.084,-164.697,-123.155,-401.675,0,-375.787	1/2:110:0,56,54:0:0:56,54:2012,1924:-268.014,-103.842,-86.9841,-164.474,0,-148.219	1/2:46:0,31,15:0:0:31,15:1112,507:-119.985,-29.21,-19.878,-91.059,0,-86.5436	1/2:43:0,22,20:0:0:22,20:792,710:-102.864,-38.2515,-31.6289,-64.6756,0,-58.655	1/1:243:0,243,0:0:0:243,0:8648,0:-778.146,-73.1503,0,-778.146,-73.1503,-778.146	1/2:113:0,54,58:0:0:54,58:1928,2055:-272.428,-115.216,-98.9601,-157.28,0,-139.82	1/2:83:0,41,42:0:0:41,42:1468,1477:-199.61,-79.8738,-67.5316,-120.038,0,-107.394	1/1:24:0,24,0:0:0:24,0:855,0:-77.2541,-7.22472,0,-77.2541,-7.22472,-77.2541	1/2:81:0,44,37:0:0:44,37:1564,1309:-201.344,-73.8459,-60.6006,-127.798,0,-116.66	1/1:54:0,54,0:0:0:54,0:1932,0:-174.149,-16.2556,0,-174.149,-16.2556,-174.149	1/1:47:0,47,0:0:0:47,0:1665,0:-150.113,-14.1484,0,-150.113,-14.1484,-150.113	1/1:49:0,49,0:0:0:49,0:1744,0:-157.217,-14.7505,0,-157.217,-14.7505,-157.217	1/2:53:0,30,23:0:0:30,23:1076,790:-131.669,-43.8515,-34.8206,-88.1113,0,-81.1876	1/1:38:0,38,0:0:0:38,0:1326,0:-119.636,-11.4391,0,-119.636,-11.4391,-119.636	1/1:23:0,23,0:0:0:23,0:828,0:-74.8359,-6.92369,0,-74.8359,-6.92369,-74.8359	1/2:8:0,3,5:0:0:3,5:108,178:-20.0313,-11.196,-10.2929,-9.16364,0,-7.65849	1/2:290:0,161,129:0:0:161,129:5784,4596:-718.909,-247.068,-198.602,-472.138,0,-433.305	1/2:174:0,102,72:0:0:102,72:3649,2537:-435.925,-138.322,-107.616,-297.896,0,-276.221	1/1:240:0,239,0:0:0:239,0:8547,0:-768.833,-71.9462,0,-768.833,-71.9462,-768.833	1/2:206:0,90,115:0:0:90,115:3216,4062:-481.496,-219.368,-192.275,-262.079,0,-227.46	1/1:86:0,86,0:0:0:86,0:3091,0:-278.359,-25.8886,0,-278.359,-25.8886,-278.359	1/2:77:0,41,36:0:0:41,36:1451,1263:-186.989,-68.7591,-56.4169,-118.525,0,-107.688	1/1:302:0,302,0:0:0:302,0:10802,0:-971.904,-90.9111,0,-971.904,-90.9111,-971.904	1/2:229:0,110,117:0:0:110,117:3914,4156:-542.668,-223.711,-190.598,-318.902,0,-283.682	1/2:40:0,12,28:0:0:12,28:428,957:-87.9977,-53.078,-49.4656,-35.2421,0,-26.8133	1/1:323:0,323,0:0:0:323,0:11513,0:-1035.92,-97.2327,0,-1035.92,-97.2327,-1035.92	1/2:125:0,85,40:0:0:85,40:3044,1433:-325.419,-77.1192,-51.5317,-248.583,0,-236.541	1/1:135:0,133,0:0:0:133,0:4735,0:-426.003,-40.037,0,-426.003,-40.037,-426.003	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:9:0,5,4:0:0:5,4:180,144:-22.5794,-7.83441,-6.32926,-15.0406,0,-13.8365	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:177:0,177,0:0:0:177,0:6309,0:-567.462,-53.2823,0,-567.462,-53.2823,-567.462	1/2:180:0,104,76:0:0:104,76:3715,2653:-447.256,-144.304,-112.997,-303.244,0,-280.366	1/2:21:0,12,9:0:0:12,9:430,319:-53.3325,-18.2175,-14.6051,-35.4143,0,-32.705	.:.:.:.:.:.:.:.	1/1:39:0,38,1:0:0:38,1:1360,36:-122.447,-11.4391,0,-120.53,-9.27326,-120.229	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:213:0,115,98:0:0:115,98:4113,3483:-522.162,-187.593,-152.974,-334.866,0,-305.365	1/2:44:0,21,23:0:0:21,23:743,822:-104.907,-44.3384,-38.0168,-60.8713,0,-53.9476	1/1:63:0,63,0:0:0:63,0:2248,0:-202.565,-18.9649,0,-202.565,-18.9649,-202.565	1/2:77:0,38,38:0:0:38,38:1355,1343:-182.893,-72.4019,-60.9627,-110.54,0,-99.1014	1/1:196:0,195,1:0:0:195,1:6975,36:-627.39,-58.7009,0,-624.642,-55.6143,-624.341	1/1:224:0,221,2:0:0:221,2:7896,72:-710.328,-66.5276,0,-705.699,-61.8814,-705.097	1/2:72:0,33,39:0:0:33,39:1175,1390:-170.801,-74.9994,-65.0654,-96.1069,0,-84.3667	1/2:101:0,48,53:0:0:48,53:1711,1886:-240.54,-101.018,-86.5683,-139.826,0,-123.871	1/2:73:0,40,32:0:0:40,32:1421,1132:-176.063,-60.5916,-48.5504,-115.516,0,-105.883	2/2:5:0,0,5:0:0:0,5:0,175:-11.3607,-11.3607,-11.3607,-1.50515,-1.50515,0	1/2:177:0,83,93:0:0:83,93:2988,3307:-428.116,-184.285,-159.299,-243.915,0,-215.919	1/2:72:0,47,25:0:0:47,25:1673,878:-184.156,-47.7496,-33.6012,-136.689,0,-129.163	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:182:0,182,0:0:0:182,0:6486,0:-583.707,-54.7875,0,-583.707,-54.7875,-583.707	1/2:18:0,7,11:0:0:7,11:252,382:-41.563,-20.9555,-18.8483,-20.9217,0,-17.6104	1/1:1:0,1,0:0:0:1,0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chr10	20585813	.	A	T	14576.8	PASS	AB=0.250924;ABP=3357.44;AC=85;AF=0.452128;AN=188;AO=1598;CIGAR=1X;DP=6778;DPB=6778;DPRA=0;EPP=3473.02;EPPR=11238.2;GTI=26;LEN=1;MEANALT=1.05319;MQM=47.127;MQMR=40.1463;NS=94;NUMALT=1;ODDS=2.84393;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56990;QR=183920;RO=5174;RPL=1598;RPP=3473.02;RPPR=11238.2;RPR=0;RUN=1;SAF=1598;SAP=3473.02;SAR=0;SRF=5174;SRP=11238.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:30,2:30:1072:2:68:0,-3.20128,-68.7244	0/1:54:46,8:46:1648:8:288:-9.39102,0,-123.217	0/1:73:64,9:64:2279:9:320:-5.08405,0,-157.565	0/1:133:101,32:101:3554:32:1148:-62.9331,0,-238.974	0/0:42:39,3:39:1400:3:108:0,-2.61072,-107.247	0/1:71:55,16:55:1961:16:576:-30.519,0,-129.498	0/1:62:56,6:56:2008:6:216:-0.990028,0,-149.116	0/1:53:45,8:45:1578:8:288:-10.1704,0,-109.753	0/1:66:52,12:52:1872:12:428:-19.0381,0,-114.316	0/1:58:40,18:40:1432:18:644:-40.4308,0,-102.779	0/1:42:21,21:21:752:21:744:-53.9585,0,-49.6177	0/1:85:65,20:65:2308:20:695:-33.7445,0,-145.749	0/1:43:27,16:27:951:16:572:-33.8623,0,-61.9582	0/1:43:30,13:30:1049:13:459:-28.2746,0,-76.0978	0/1:65:50,15:50:1762:15:540:-29.0318,0,-122.121	0/1:38:29,9:29:1019:9:311:-16.7801,0,-71.0175	0/1:33:27,6:27:943:6:212:-9.39416,0,-67.3173	0/1:29:21,8:21:748:8:288:-17.3951,0,-53.3356	0/1:17:10,7:10:360:7:252:-17.7866,0,-23.6971	0/1:43:35,8:35:1260:8:288:-13.1506,0,-94.0821	0/1:96:58,38:58:2065:38:1364:-93.5722,0,-138.913	0/1:100:90,10:90:3196:10:360:-1.30634,0,-230.627	0/1:93:70,23:70:2497:23:828:-46.3269,0,-169.756	0/1:75:63,12:63:2237:12:428:-16.1239,0,-166.368	0/1:28:25,3:25:900:3:108:-1.6037,0,-67.8585	0/1:198:161,37:161:5749:37:1324:-54.6145,0,-398.26	0/1:98:68,30:68:2436:30:1072:-66.8745,0,-173.971	0/1:23:11,12:11:392:12:428:-31.7627,0,-26.5389	0/1:143:104,39:104:3715:39:1404:-77.592,0,-250.052	0/1:61:34,27:34:1220:27:934:-65.5769,0,-78.2382	0/1:118:88,29:88:3137:29:1036:-57.1635,0,-217.435	0/1:114:100,14:100:3515:14:496:-7.37966,0,-264.235	0/1:49:37,12:37:1296:12:428:-23.4036,0,-97.0758	0/1:45:39,6:39:1392:6:216:-5.7012,0,-98.0277	0/1:103:82,21:82:2940:21:742:-35.6761,0,-217.965	0/0:72:69,3:69:2444:3:108:0,-11.6536,-171.525	0/1:141:101,40:101:3601:40:1418:-84.6263,0,-241.388	0/1:100:74,26:74:2629:26:932:-53.7082,0,-186.803	0/1:45:39,6:39:1404:6:216:-4.96693,0,-94.814	0/1:13:6,7:6:201:7:237:-17.6617,0,-13.9485	0/1:85:73,12:73:2608:12:428:-11.2598,0,-190.619	0/0:38:34,4:34:1203:4:144:0,-0.0696471,-93.4098	0/1:78:53,25:53:1865:25:896:-57.1432,0,-131.945	0/1:41:26,15:26:932:15:536:-35.9117,0,-62.1531	0/1:44:32,12:32:1122:12:432:-25.4424,0,-78.4295	0/1:100:87,13:87:3100:13:459:-10.8948,0,-217.429	0/1:50:36,14:36:1288:14:485:-28.6654,0,-89.3866	0/1:156:130,25:130:4619:25:896:-33.4041,0,-327.664	0/1:54:45,9:45:1585:9:324:-13.0465,0,-115.722	0/1:71:60,11:60:2125:11:392:-12.8754,0,-144.855	0/1:88:75,13:75:2653:13:464:-14.8804,0,-191.048	0/1:53:42,11:42:1512:11:396:-19.4258,0,-103.996	0/1:108:92,16:92:3277:16:576:-17.9551,0,-202.102	0/1:35:28,7:28:995:7:252:-12.3339,0,-69.3124	0/0:42:39,3:39:1400:3:108:0,-2.62271,-105.592	0/1:87:71,16:71:2532:16:576:-22.6821,0,-176.073	0/0:30:29,1:29:1024:1:36:0,-5.45747,-82.7136	0/1:52:45,7:45:1604:7:252:-6.53365,0,-116.705	0/0:158:144,14:144:5115:14:504:0,-2.1714,-392.562	0/1:49:31,18:31:1097:18:633:-42.2171,0,-74.2998	0/1:145:108,37:108:3847:37:1314:-68.3942,0,-269.846	0/1:70:63,7:63:2222:7:252:-1.79788,0,-167.251	0/1:114:84,30:84:2978:30:1076:-62.17,0,-199.429	0/1:47:34,13:34:1193:13:468:-28.0181,0,-79.3594	0/1:40:30,10:30:1068:10:360:-20.5646,0,-75.0565	0/1:50:40,10:40:1428:10:356:-17.1171,0,-95.4404	0/1:105:66,39:66:2352:39:1396:-93.523,0,-156.496	0/1:92:80,12:80:2809:12:432:-9.8539,0,-191.796	0/1:24:14,10:14:504:10:351:-24.5893,0,-36.292	0/1:38:25,13:25:885:13:468:-30.772,0,-55.7658	0/1:62:42,20:42:1512:20:716:-42.7144,0,-109.298	0/1:35:29,6:29:1044:6:212:-8.76565,0,-73.1155	0/1:103:76,27:76:2680:27:968:-55.9476,0,-184.161	0/1:46:31,15:31:1116:15:525:-33.4825,0,-67.1186	0/1:123:67,56:67:2396:56:2004:-142.857,0,-163.616	0/1:151:90,61:90:3190:61:2180:-149.575,0,-221.05	0/0:99:95,4:95:3356:4:144:0,-17.5304,-233.159	0/1:92:67,25:67:2369:25:892:-46.8241,0,-151.017	0/0:40:38,2:38:1364:2:72:0,-6.23758,-93.9711	0/1:88:59,29:59:2108:29:1010:-64.3463,0,-148.254	0/1:69:58,11:58:2050:11:396:-14.8051,0,-123.463	0/1:137:110,27:110:3925:27:968:-45.6122,0,-280.459	0/1:73:45,27:45:1589:27:968:-64.82,0,-104.283	0/1:27:17,10:17:600:10:360:-22.8779,0,-42.0286	0/1:43:34,8:34:1212:8:284:-11.5418,0,-87.488	0/1:113:83,30:83:2968:30:1054:-56.6972,0,-205.344	0/1:24:15,9:15:540:9:315:-21.3107,0,-35.6896	0/1:99:71,28:71:2532:28:995:-59.5943,0,-157.477	0/1:82:64,18:64:2273:18:644:-33.2639,0,-147.333	0/1:29:23,6:23:792:6:212:-10.6335,0,-58.1955	0/1:104:68,36:68:2432:36:1292:-78.2153,0,-174.284	0/1:69:53,16:53:1870:16:576:-28.2466,0,-131.442	0/1:77:32,45:32:1133:45:1589:-119.184,0,-60.3669	0/1:52:29,23:29:1005:23:828:-58.6489,0,-62.7752
chr10	20585825	.	A	T	24201.4	PASS	AB=0.387665;ABP=744.08;AC=93;AF=0.494681;AN=188;AO=2622;CIGAR=1X;DP=6777;DPB=6777;DPRA=0;EPP=5696.61;EPPR=9021.14;GTI=1;LEN=1;MEANALT=1.01064;MQM=31.3139;MQMR=48.5206;NS=94;NUMALT=1;ODDS=96.7123;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93060;QR=147971;RO=4153;RPL=2621;RPP=5687.93;RPPR=8995.1;RPR=1;RUN=1;SAF=2621;SAP=5687.93;SAR=1;SRF=4150;SRP=8995.1;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:24,6:24:851:6:216:-7.43087,0,-50.5076	0/1:51:36,15:36:1292:15:536:-24.919,0,-99.991	0/1:74:26,48:26:923:48:1668:-104.948,0,-58.4815	0/1:132:67,65:67:2391:65:2305:-129.623,0,-172.758	0/1:42:23,19:23:828:19:680:-40.9227,0,-61.1056	0/1:75:47,28:47:1672:28:996:-51.5385,0,-116.034	0/1:63:44,19:44:1572:19:663:-29.8281,0,-121.79	0/1:53:25,28:25:896:28:1000:-58.6068,0,-63.2421	0/1:66:36,30:36:1272:30:1059:-60.5715,0,-76.8555	0/1:60:49,11:49:1752:11:379:-9.91032,0,-137.578	0/1:42:32,10:32:1148:10:360:-14.3305,0,-90.2778	0/1:87:57,30:57:2044:30:1064:-54.0063,0,-132.029	0/1:43:21,22:21:756:22:788:-46.8087,0,-49.7778	0/1:43:26,17:26:916:17:612:-36.2495,0,-69.2745	0/1:66:39,27:39:1383:27:957:-49.4506,0,-104.552	0/1:38:16,22:16:572:22:784:-50.4003,0,-39.9923	0/1:32:20,12:20:698:12:416:-22.3685,0,-51.6974	0/1:31:23,8:23:811:8:280:-12.2303,0,-62.4477	0/1:19:14,5:14:496:5:176:-7.86815,0,-36.9894	0/1:46:36,10:36:1292:10:348:-12.3804,0,-101.424	0/1:96:55,41:55:1972:41:1464:-85.7251,0,-148.277	0/1:99:54,45:54:1915:45:1585:-86.3902,0,-141.979	0/1:91:51,40:51:1819:40:1424:-76.5965,0,-135.009	0/1:75:48,27:48:1704:27:972:-53.6395,0,-129.58	0/1:27:15,12:15:532:12:428:-26.1898,0,-39.816	0/1:200:107,93:107:3828:93:3261:-179.231,0,-275.599	0/1:100:64,36:64:2272:36:1292:-71.6836,0,-173.422	0/1:23:18,5:18:648:5:180:-7.44504,0,-51.548	0/1:143:78,65:78:2778:65:2309:-124.156,0,-201.537	0/1:59:35,24:35:1244:24:844:-46.8499,0,-93.9154	0/1:123:75,48:75:2684:48:1695:-87.6249,0,-200.185	0/1:116:74,42:74:2628:42:1496:-82.826,0,-196.743	0/1:49:37,12:37:1320:12:428:-19.136,0,-103.237	0/1:43:24,19:24:856:19:684:-38.6498,0,-60.0254	0/1:104:83,21:83:2960:21:743:-25.2058,0,-230.821	0/1:72:51,21:51:1828:21:743:-34.3085,0,-114.882	0/1:141:76,65:76:2707:65:2302:-124.218,0,-200.351	0/1:94:54,40:54:1936:40:1432:-82.4607,0,-145.751	0/1:48:31,17:31:1108:17:608:-31.8917,0,-73.1917	0/0:16:15,1:15:532:1:36:0,-1.69284,-44.8547	0/1:83:41,42:41:1476:42:1508:-93.041,0,-105.57	0/1:39:31,8:31:1116:8:288:-10.8608,0,-86.6869	0/1:78:47,31:47:1676:31:1104:-63.1018,0,-126.213	0/1:40:28,12:28:1004:12:432:-19.2864,0,-77.3961	0/1:42:28,14:28:1008:14:485:-22.7371,0,-77.802	0/1:96:47,49:47:1675:49:1717:-98.8163,0,-120.218	0/1:46:26,20:26:928:20:707:-39.6637,0,-69.4676	0/1:156:92,64:92:3261:64:2279:-119.814,0,-244.131	0/1:54:37,17:37:1324:17:612:-28.2961,0,-102.351	0/1:71:32,39:32:1140:39:1383:-78.3064,0,-79.4202	0/1:92:57,35:57:2036:35:1245:-63.6221,0,-154.483	0/1:53:28,25:28:1004:25:890:-49.4588,0,-73.6236	0/1:113:80,33:80:2838:33:1165:-53.652,0,-175.424	0/1:35:21,14:21:739:14:497:-26.0964,0,-54.8868	0/1:45:36,9:36:1288:9:316:-11.2134,0,-95.8961	0/1:81:25,56:25:892:56:2004:-132.51,0,-53.2583	0/1:30:20,10:20:716:10:360:-17.3843,0,-55.5059	0/1:54:32,22:32:1139:22:784:-41.402,0,-85.7027	0/1:159:124,35:124:4411:35:1208:-41.4094,0,-347.102	0/1:50:25,25:25:896:25:896:-55.3823,0,-65.4465	0/1:141:90,51:90:3206:51:1820:-89.8949,0,-241.19	0/1:70:52,18:52:1864:18:648:-26.443,0,-145.68	0/1:117:64,53:64:2280:53:1891:-103.671,0,-167.289	0/1:45:22,23:22:784:23:816:-46.2079,0,-57.0471	0/1:40:18,22:18:640:22:792:-50.1192,0,-45.6742	0/1:53:22,31:22:792:31:1100:-64.9127,0,-55.3674	0/1:100:68,32:68:2419:32:1148:-52.4732,0,-185.709	0/1:89:35,54:35:1227:54:1928:-115.45,0,-82.5711	0/1:25:19,6:19:680:6:212:-9.49162,0,-53.8591	0/1:40:23,17:23:811:17:603:-34.0358,0,-56.6621	0/1:63:49,14:49:1756:14:485:-17.2435,0,-135.675	0/1:36:19,17:19:680:17:608:-33.6104,0,-50.1507	0/1:100:56,44:56:1978:44:1537:-86.4303,0,-146.038	0/1:44:27,17:27:968:17:591:-31.9068,0,-65.6737	0/1:125:88,37:88:3156:37:1308:-65.8185,0,-245.079	0/1:153:113,40:113:4006:40:1410:-59.6723,0,-313.253	0/1:95:64,31:64:2269:31:1095:-53.7272,0,-136.598	0/1:88:42,44:42:1475:44:1571:-91.7101,0,-91.9733	0/1:38:21,17:21:756:17:595:-34.7094,0,-42.3245	0/1:86:48,38:48:1716:38:1352:-80.5769,0,-128.034	0/1:68:42,26:42:1500:26:932:-49.4561,0,-88.428	0/1:139:87,52:87:3095:52:1855:-92.9055,0,-236.318	0/1:74:47,27:47:1684:27:964:-46.6924,0,-128.93	0/1:27:19,8:19:659:8:288:-13.697,0,-50.1828	0/1:41:31,10:31:1099:10:352:-12.2011,0,-85.7016	0/1:112:71,41:71:2524:41:1438:-70.9464,0,-188.04	0/1:26:22,4:22:788:4:144:-3.77321,0,-57.8645	0/1:99:72,27:72:2568:27:972:-44.1112,0,-173.902	0/1:80:49,31:49:1744:31:1089:-58.5951,0,-116.607	0/1:28:17,11:17:608:11:396:-22.8075,0,-46.1986	0/1:101:73,28:73:2596:28:996:-48.0296,0,-195.435	0/1:72:45,27:45:1569:27:956:-48.0899,0,-115.453	0/1:79:45,34:45:1607:34:1220:-65.5614,0,-120.068	0/1:54:30,24:30:1064:24:855:-46.3918,0,-79.2567
chr10	21119300	.	TAAC	CAAC,CAAA	117115	PASS	AB=0.498613,0.49896;ABP=3.05849,3.03741;AC=133,53;AF=0.715054,0.284946;AN=186;AO=4019,1459;CIGAR=1X3M,1X2M1X;DP=5499;DPB=5499;DPRA=8.03516,1.04235;EPP=8704.12,3162.51;EPPR=7.35324;GTI=2;LEN=1,4;MEANALT=1.79121,2.12727;MQM=59.9988,59.9746;MQMR=60;NS=93;NUMALT=2;ODDS=2.3103;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=143471,51933;QR=72;RO=2;RPL=3,1;RPP=8704.12,3162.51;RPPR=7.35324;RPR=4016,1458;RUN=1,1;SAF=4019,1459;SAP=8730.16,3171.19;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/1:39:0,39,0:0:0:39,0:1388,0:-125.219,-11.7402,0,-125.219,-11.7402,-125.219	1/1:70:0,69,0:0:0:69,0:2443,0:-219.872,-20.7711,0,-219.872,-20.7711,-219.872	1/2:198:0,101,96:0:0:101,96:3601,3422:-572.571,-279.036,-248.632,-293.63,0,-264.731	1/2:16:0,7,9:0:0:7,9:252,323:-47.2682,-26.7058,-24.5986,-20.9217,0,-18.2125	1/2:6:0,3,3:0:0:3,3:108,95:-16.7951,-7.96124,-7.05815,-9.17208,0,-8.26899	1/2:34:0,14,20:0:0:14,20:500,708:-98.7908,-58.0247,-53.8103,-41.1218,0,-35.1012	1/1:76:0,76,0:0:0:76,0:2724,0:-245.403,-22.8783,0,-245.403,-22.8783,-245.403	1/2:47:0,27,19:0:0:27,19:959,670:-132.69,-54.5467,-46.4189,-78.1379,0,-72.4184	1/2:65:0,40,25:0:0:40,25:1428,881:-188.503,-72.0805,-60.0393,-116.776,0,-109.251	1/1:35:0,35,0:0:0:35,0:1247,0:-112.534,-10.5361,0,-112.534,-10.5361,-112.534	1/2:57:0,23,34:0:0:23,34:828,1220:-167.433,-99.8721,-92.9484,-67.9204,0,-57.6854	1/1:40:0,40,0:0:0:40,0:1436,0:-129.538,-12.0412,0,-129.538,-12.0412,-129.538	1/1:48:0,48,0:0:0:48,0:1701,0:-153.374,-14.4494,0,-153.374,-14.4494,-153.374	1/1:51:0,50,0:0:0:50,0:1792,0:-161.203,-15.0515,0,-161.203,-15.0515,-161.203	1/2:47:0,25,22:0:0:25,22:892,776:-136.258,-63.5386,-56.0128,-73.0739,0,-66.4513	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6759,-8.42884,0,-90.6759,-8.42884,-90.6759	1/2:14:0,11,3:0:0:11,3:392,108:-41.1218,-9.17208,-5.86075,-32.3087,0,-31.4056	1/2:53:0,17,36:0:0:17,36:608,1276:-153.883,-104.305,-99.1876,-49.9345,0,-39.0974	1/2:135:0,62,73:0:0:62,73:2176,2607:-389.988,-212.903,-194.24,-177.438,0,-155.463	1/1:31:0,31,0:0:0:31,0:1108,0:-100.031,-9.33193,0,-100.031,-9.33193,-100.031	1/2:56:0,20,36:0:0:20,36:720,1281:-163.506,-104.756,-98.7357,-59.1082,0,-48.2711	1/2:57:0,51,6:0:0:51,6:1832,210:-166.893,-17.4355,-2.08299,-149.808,0,-148.002	1/2:17:0,9,8:0:0:9,8:320,282:-49.3926,-23.3133,-20.604,-26.4331,0,-24.0248	1/1:191:0,190,1:0:0:190,1:6769,31:-608.975,-57.1957,0,-606.487,-54.3973,-606.186	1/2:145:0,68,77:0:0:68,77:2444,2734:-422.512,-223.125,-202.655,-199.745,0,-176.565	1/2:38:0,24,14:0:0:24,14:852,500:-110.541,-41.1219,-33.8972,-69.7757,0,-65.5612	1/1:202:0,202,0:0:0:202,0:7240,0:-651.652,-60.8081,0,-651.652,-60.8081,-651.652	1/2:73:0,33,40:0:0:33,40:1154,1437:-211.461,-117.587,-107.653,-94.2283,0,-82.1871	1/1:91:0,91,0:0:0:91,0:3249,0:-292.631,-27.3937,0,-292.631,-27.3937,-292.631	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	.:.:.:.:.:.:.:.	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	2/2:13:0,0,13:0:0:0,13:0,457:-41.464,-41.464,-41.464,-3.91339,-3.91339,0	1/1:144:0,143,0:0:0:143,0:5090,0:-457.885,-43.0473,0,-457.885,-43.0473,-457.885	1/2:58:0,33,25:0:0:33,25:1169,894:-168.48,-73.2547,-63.3207,-95.5813,0,-88.0555	1/2:33:0,16,17:0:0:16,17:568,607:-96.1241,-49.8446,-45.0281,-46.6354,0,-41.5179	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:50:0,49,1:0:0:49,1:1747,36:-157.154,-14.7505,0,-154.216,-11.4532,-153.915	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/2:85:0,44,41:0:0:44,41:1558,1462:-246.444,-119.534,-106.289,-127.265,0,-114.923	1/2:44:0,24,20:0:0:24,20:864,720:-129.606,-59.1082,-51.8835,-70.8578,0,-64.8372	1/1:62:1,61,0:1:36:61,0:2158,0:-190.888,-15.0656,0,-191.189,-18.3628,-194.127	1/2:45:0,19,26:0:0:19,26:668,916:-129.301,-74.9286,-69.209,-54.7239,0,-46.8971	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/1:148:0,148,0:0:0:148,0:5308,0:-477.853,-44.5524,0,-477.853,-44.5524,-477.853	1/2:61:0,23,38:0:0:23,38:824,1350:-177.564,-110.361,-103.437,-67.5596,0,-56.1205	1/2:103:0,54,48:0:0:54,48:1925,1706:-295.93,-139.017,-122.761,-156.91,0,-142.46	1/2:54:0,15,39:0:0:15,39:526,1374:-155.02,-112.217,-107.702,-43.1533,0,-31.4131	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:51:0,30,21:0:0:30,21:1072,745:-148.458,-61.0526,-52.0217,-87.7616,0,-81.4399	1/2:38:0,20,18:0:0:20,18:716,643:-111.172,-52.7821,-46.7615,-58.7471,0,-53.3286	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:98:0,97,0:0:0:97,0:3453,0:-310.702,-29.1999,0,-310.702,-29.1999,-310.702	1/2:38:0,26,12:0:0:26,12:936,423:-111.171,-34.7935,-26.9667,-76.7327,0,-73.1203	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.598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chr10	21510954	.	A	G	203257	PASS	AB=0.482853;ABP=17.9038;AC=133;AF=0.715054;AN=186;AO=7771;CIGAR=1X;DP=10826;DPB=10826;DPRA=16.7997;EPP=16877.5;EPPR=6615.14;GTI=1;LEN=1;MEANALT=1.1087;MQM=59.9703;MQMR=59.9869;NS=93;NUMALT=1;ODDS=6.09059;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272952;QR=108829;RO=3045;RPL=4005;RPP=18.9718;RPPR=108.714;RPR=3766;RUN=1;SAF=4005;SAP=18.9718;SAR=3766;SRF=1715;SRP=108.714;SRR=1330;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:31,37:31:1112:37:1320:-98.6319,0,-79.9213	1/1:53:0,53:0:0:53:1878:-169.298,-15.9546,0	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	0/1:296:168,127:168:5985:127:4441:-310.851,0,-449.74	0/1:170:99,71:99:3537:71:2503:-174.349,0,-267.363	0/1:56:32,24:32:1137:24:860:-60.8608,0,-85.7793	0/1:124:39,85:39:1387:85:2958:-229.125,0,-87.8004	1/1:82:0,82:0:0:82:2902:-261.417,-24.6845,0	0/1:80:49,31:49:1760:31:1112:-76.3089,0,-134.601	0/1:117:58,59:58:2067:59:2056:-150.089,0,-151.08	1/1:66:0,66:0:0:66:2282:-205.641,-19.868,0	0/1:75:38,37:38:1352:37:1302:-94.9026,0,-99.4031	1/1:39:0,39:0:0:39:1348:-121.615,-11.7402,0	1/1:94:0,94:0:0:94:3324:-299.382,-28.2968,0	1/1:95:1,94:1:36:94:3285:-292.273,-24.9996,0	0/1:55:31,23:31:1099:23:815:-57.0532,0,-82.6042	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:34:17,17:17:612:17:585:-42.7369,0,-45.1784	0/1:199:93,105:93:3348:105:3709:-274.051,0,-241.572	0/1:256:120,135:120:4281:135:4754:-350.903,0,-308.345	1/1:142:1,140:1:36:140:4908:-438.28,-39.2068,0	0/1:153:78,75:78:2782:75:2624:-190.348,0,-204.562	1/1:156:9,147:9:324:147:5179:-436.749,-17.4548,0	0/1:116:54,62:54:1932:62:2172:-160.824,0,-139.237	1/1:371:1,370:1:36:370:12979:-1164.34,-108.084,0	0/1:381:199,182:199:7107:182:6443:-465.272,0,-524.998	0/1:50:26,24:26:932:24:848:-61.5882,0,-69.1474	1/1:307:0,305:0:0:305:10593:-952.91,-91.8142,0	0/1:157:77,80:77:2752:80:2822:-206.956,0,-200.661	1/1:129:0,129:0:0:129:4521:-407.064,-38.8329,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:20:9,11:9:320:11:392:-29.5995,0,-23.1218	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/1:25:19,6:19:676:6:216:-12.2648,0,-53.6422	1/1:252:1,251:1:36:251:8657:-775.516,-72.2613,0	0/1:158:72,86:72:2580:86:3060:-228.068,0,-184.886	0/1:53:29,24:29:1044:24:855:-61.3162,0,-78.3202	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:182:6,176:6:216:176:6264:-544.064,-34.9969,0	1/1:53:0,53:0:0:53:1876:-169.119,-15.9546,0	0/1:237:153,84:153:5448:84:2939:-193.402,0,-419.108	0/1:115:65,50:65:2324:50:1742:-122.444,0,-174.802	1/1:80:0,80:0:0:80:2808:-252.946,-24.0824,0	0/1:168:105,63:105:3764:63:2225:-149.94,0,-288.386	1/1:98:0,98:0:0:98:3501:-315.292,-29.5009,0	1/1:147:2,145:2:72:145:5039:-446.826,-37.4147,0	0/1:128:64,64:64:2292:64:2278:-166.749,0,-168.01	0/1:178:84,94:84:3004:94:3303:-243.91,0,-217.008	0/1:170:73,97:73:2628:97:3412:-256.119,0,-185.591	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:101:42,59:42:1508:59:2102:-159.046,0,-105.611	0/1:67:30,37:30:1072:37:1316:-98.5728,0,-76.6234	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:164:0,163:0:0:163:5779:-519.866,-49.0679,0	0/1:83:39,44:39:1391:44:1559:-115.598,0,-100.503	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:17:5,12:5:180:12:423:-33.2876,0,-11.4346	0/1:129:67,62:67:2408:62:2178:-157.453,0,-178.143	1/1:154:2,152:2:59:152:5328:-474.058,-40.7545,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:306:173,133:173:6140:133:4657:-327.182,0,-460.586	1/1:294:0,294:0:0:294:10296:-926.585,-88.5028,0	0/1:108:51,57:51:1828:57:1995:-147.313,0,-132.29	1/1:117:0,117:0:0:117:4090:-368.292,-35.2205,0	0/1:230:107,123:107:3839:123:4321:-319.833,0,-276.468	1/1:166:0,166:0:0:166:5862:-527.692,-49.971,0	0/1:67:25,42:25:891:42:1476:-112.965,0,-60.3398	0/1:44:29,15:29:1040:15:532:-34.9678,0,-80.669	1/1:84:1,83:1:36:83:2834:-251.7,-21.6882,0	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	1/1:95:0,95:0:0:95:3361:-302.706,-28.5979,0	1/1:72:0,72:0:0:72:2563:-230.912,-21.6742,0	1/1:235:1,234:1:36:234:8259:-739.732,-67.1438,0	1/1:208:0,208:0:0:208:7288:-655.978,-62.6142,0	0/1:154:101,53:101:3616:53:1865:-121.769,0,-279.097	0/1:53:21,32:21:752:32:1127:-85.7829,0,-52.0517	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:143:69,74:69:2484:74:2620:-193.002,0,-180.765	0/1:36:21,15:21:752:15:540:-38.0995,0,-57.1692	1/1:292:1,291:1:36:291:10141:-909.049,-84.3025,0	1/1:92:0,91:0:0:91:3173:-285.462,-27.3937,0	1/1:89:0,89:0:0:89:3118:-280.848,-26.7917,0	1/1:79:0,79:0:0:79:2776:-250.081,-23.7814,0	0/1:217:103,114:103:3672:114:3958:-291.08,0,-265.358	0/1:20:14,6:14:496:6:207:-12.9463,0,-38.9398	0/1:63:35,28:35:1256:28:984:-69.9085,0,-94.3804	0/1:49:27,22:27:968:22:763:-54.1678,0,-72.6869	0/1:54:23,31:23:811:31:1091:-82.2431,0,-57.0543	0/1:112:62,50:62:2216:50:1772:-126.048,0,-165.989	0/1:112:75,37:75:2684:37:1298:-83.4043,0,-208.09	1/1:211:0,210:0:0:210:7377:-663.627,-63.2163,0	1/1:144:0,144:0:0:144:5072:-456.632,-43.3483,0
chr10	21512176	.	C	T	151786	PASS	AB=0.389513;ABP=749.163;AC=125;AF=0.664894;AN=188;AO=7930;CIGAR=1X;DP=18783;DPB=18783;DPRA=0;EPP=17188.1;EPPR=21221.1;GTI=19;LEN=1;MEANALT=1.02128;MQM=59.9939;MQMR=59.9942;NS=94;NUMALT=1;ODDS=0.318978;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=283225;QR=388970;RO=10851;RPL=7926;RPP=17188.1;RPPR=21221.1;RPR=4;RUN=1;SAF=7930;SAP=17222.8;SAR=0;SRF=10851;SRP=23565.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:15,7:15:540:7:248:-16.0415,0,-42.3139	1/1:141:0,141:0:0:141:5026:-452.484,-42.4452,0	1/1:110:0,110:0:0:110:3915:-352.545,-33.1133,0	0/1:168:67,101:67:2400:101:3616:-275.073,0,-165.684	0/1:85:53,32:53:1904:32:1144:-77.682,0,-146.05	0/1:88:48,40:48:1728:40:1422:-101.785,0,-129.315	0/1:164:99,65:99:3532:65:2336:-161.13,0,-268.721	1/1:188:0,188:0:0:188:6708:-603.794,-56.5936,0	0/1:73:34,39:34:1216:39:1404:-104.684,0,-87.7714	0/1:128:63,65:63:2256:65:2328:-171.248,0,-164.771	1/1:162:1,161:1:36:161:5757:-514.647,-45.1686,0	0/1:85:34,51:34:1215:51:1813:-137.862,0,-84.0682	1/1:81:2,79:2:72:79:2817:-246.931,-17.5467,0	1/1:169:0,169:0:0:169:6004:-540.466,-50.8741,0	1/1:59:0,59:0:0:59:2076:-187.107,-17.7608,0	0/1:94:54,40:54:1940:40:1419:-99.7098,0,-146.579	1/1:150:0,150:0:0:150:5339:-480.644,-45.1545,0	1/1:77:0,77:0:0:77:2768:-249.361,-23.1793,0	0/1:167:141,26:141:5060:26:930:-33.7463,0,-405.272	0/1:252:147,105:147:5264:105:3746:-261.48,0,-398.037	0/1:168:89,79:89:3204:79:2798:-201.488,0,-238.009	1/1:140:0,140:0:0:140:4985:-448.799,-42.1442,0	0/1:54:30,24:30:1076:24:864:-61.8269,0,-80.8972	0/1:87:8,79:8:288:79:2827:-228.479,0,-0.0777969	0/1:106:69,37:69:2476:37:1314:-86.6511,0,-191.184	1/1:309:1,308:1:36:308:11015:-987.64,-89.42,0	0/1:257:125,132:125:4492:132:4688:-344.717,0,-327.082	0/1:49:28,21:28:1000:21:756:-53.6168,0,-75.5649	1/1:339:0,339:0:0:339:12107:-1089.47,-102.049,0	0/1:140:71,69:71:2548:69:2457:-179.239,0,-187.426	1/1:124:0,124:0:0:124:4402:-396.354,-37.3277,0	0/1:28:8,20:8:284:20:720:-56.6999,0,-17.4745	0/0:1021:993,28:993:35645:28:1003:0,-216.766,-3116.3	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:19:2,17:2:72:17:612:-49.6939,0,-1.11715	0/0:1030:1016,14:1016:36444:14:504:0,-264.363,-3233.07	1/1:237:0,237:0:0:237:8457:-761.132,-71.3441,0	0/1:223:114,109:114:4084:109:3908:-284.783,0,-300.616	0/1:427:341,86:341:12240:86:3047:-145.919,0,-972.898	0/0:402:396,6:396:14212:6:216:0,-101.224,-1259.04	1/1:162:2,160:2:72:160:5718:-507.9,-41.9301,0	1/1:76:0,76:0:0:76:2718:-244.863,-22.8783,0	0/1:158:98,60:98:3520:60:2143:-145.574,0,-269.446	0/1:69:37,32:37:1324:32:1135:-81.687,0,-98.691	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:75:32,43:32:1144:43:1516:-114.153,0,-80.6923	1/1:104:1,103:1:36:103:3669:-326.813,-27.7088,0	1/1:139:0,139:0:0:139:4983:-448.617,-41.8432,0	0/1:104:54,50:54:1940:50:1796:-130.615,0,-143.569	0/1:166:69,97:69:2476:97:3475:-262.99,0,-173.122	0/1:199:106,93:106:3804:93:3329:-239.922,0,-282.652	0/0:1366:1352,14:1352:48485:14:495:0,-366.324,-4317.07	0/1:255:162,93:162:5800:93:3335:-223.604,0,-445.351	0/1:70:45,25:45:1616:25:896:-59.8883,0,-124.658	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:131:0,130:0:0:130:4676:-420.639,-39.1339,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/0:988:972,16:972:34789:16:576:0,-245.243,-3075.75	0/1:165:86,79:86:3072:79:2813:-203.31,0,-227.039	1/1:241:1,240:1:36:240:8588:-769.314,-68.95,0	0/0:701:689,12:689:24704:12:428:0,-172.163,-2183.81	0/1:129:60,69:60:2143:69:2484:-184.98,0,-154.304	1/1:211:0,211:0:0:211:7563:-680.708,-63.5173,0	0/1:125:45,80:45:1608:80:2849:-219.018,0,-107.381	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	0/1:129:82,47:82:2940:47:1667:-111.484,0,-226.001	1/1:168:1,167:1:36:167:5978:-534.527,-46.9748,0	0/1:406:357,49:357:12811:49:1751:-35.6552,0,-1030.59	0/1:110:65,45:65:2332:45:1607:-111.806,0,-177.026	1/1:113:0,113:0:0:113:4043:-364.057,-34.0164,0	1/1:43:1,42:1:36:42:1512:-132.776,-9.34602,0	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0	1/1:83:0,82:0:0:82:2948:-265.331,-24.6845,0	1/1:189:0,189:0:0:189:6708:-603.799,-56.8947,0	1/1:158:0,158:0:0:158:5655:-509.069,-47.5627,0	0/1:168:63,105:63:2264:105:3733:-285.598,0,-153.449	0/1:121:75,46:75:2684:46:1639:-111.373,0,-205.38	0/0:629:625,4:625:22417:4:144:0,-176.034,-2003.62	0/1:158:88,70:88:3152:70:2516:-179.129,0,-236.342	0/1:124:64,60:64:2296:60:2137:-155.268,0,-169.573	1/1:195:0,195:0:0:195:6965:-626.915,-58.7009,0	1/1:163:1,162:1:36:162:5792:-517.794,-45.4696,0	1/1:87:0,87:0:0:87:3095:-278.778,-26.1896,0	1/1:69:0,69:0:0:69:2439:-219.763,-20.7711,0	0/1:151:76,75:76:2732:75:2691:-196.979,0,-200.667	0/1:50:25,25:25:883:25:888:-65.1875,0,-64.736	0/1:100:52,48:52:1856:48:1706:-123.721,0,-137.217	0/1:93:46,47:46:1627:47:1683:-123.761,0,-118.722	0/0:548:501,47:501:17927:47:1692:0,-12.3976,-1460.47	0/1:946:818,128:818:29284:128:4557:-125.524,0,-2349.89	0/1:68:41,27:41:1464:27:960:-66.2462,0,-111.586	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:121:0,121:0:0:121:4326:-389.515,-36.4246,0
chr10	21512245	.	A	G	50474.6	PASS	AB=0.580109;ABP=278.208;AC=52;AF=0.276596;AN=188;AO=2878;CIGAR=1X;DP=8683;DPB=8683;DPRA=1.18;EPP=6235.15;EPPR=12534.7;GTI=3;LEN=1;MEANALT=1.03333;MQM=58.6084;MQMR=59.9717;NS=94;NUMALT=1;ODDS=0.372508;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102627;QR=196957;RO=5803;RPL=3;RPP=6226.48;RPPR=12534.7;RPR=2875;RUN=1;SAF=1;SAP=6243.83;SAR=2877;SRF=0;SRP=12604.1;SRR=5803;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:79:26,53:26:884:53:1904:-146.566,0,-56.0903	0/0:113:113,0:113:3904:0:0:0,-34.0164,-351.565	0/0:117:117,0:117:3942:0:0:0,-35.2205,-354.991	0/1:279:99,180:99:3359:180:6454:-496.63,0,-218.555	0/1:100:35,65:35:1181:65:2313:-177.869,0,-76.4864	0/1:85:33,52:33:1125:52:1856:-141.446,0,-75.9645	0/1:159:49,110:49:1653:110:3911:-304.134,0,-101.191	0/0:156:156,0:156:5334:0:0:0,-46.9607,-480.214	0/1:139:51,87:51:1739:87:3107:-237.518,0,-114.931	0/1:97:29,68:29:982:68:2436:-190.114,0,-59.484	0/0:43:43,0:43:1432:0:0:0,-12.9443,-129.168	0/1:72:23,49:23:784:49:1751:-136.098,0,-49.2012	0/0:45:45,0:45:1532:0:0:0,-13.5463,-138.168	0/0:56:56,0:56:1879:0:0:0,-16.8577,-169.387	0/0:40:40,0:40:1341:0:0:0,-12.0412,-120.981	0/1:37:20,17:20:662:17:603:-43.4558,0,-48.751	0/0:50:50,0:50:1737:0:0:0,-15.0515,-156.612	0/0:36:36,0:36:1221:0:0:0,-10.8371,-110.188	0/1:38:14,24:14:487:24:851:-65.4484,0,-32.7201	0/1:259:103,156:103:3495:156:5553:-421.352,0,-236.808	0/1:178:80,98:80:2698:98:3472:-258.512,0,-189.488	0/0:206:206,0:206:7038:0:0:0,-62.0122,-633.526	0/1:82:26,56:26:896:56:1965:-152.392,0,-56.269	0/0:120:116,4:116:3906:4:144:0,-22.81,-338.436	0/1:58:31,27:31:1056:27:972:-70.3336,0,-77.8867	0/0:269:269,0:269:9188:0:0:0,-80.9771,-826.948	0/1:168:87,81:87:2905:81:2882:-208.994,0,-211.124	0/1:27:14,13:14:480:13:464:-33.9337,0,-35.3988	0/0:289:289,0:289:9684:0:0:0,-86.9977,-871.603	0/1:141:70,71:70:2408:71:2535:-185.857,0,-174.533	0/0:95:95,0:95:3206:0:0:0,-28.5978,-288.776	0/0:4:4,0:4:128:0:0:0,-1.20412,-11.8375	0/1:20:5,15:5:155:15:534:-41.8432,0,-8.23667	0/1:3:2,1:2:64:1:36:-2.69418,0,-5.1756	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:6:2,4:2:64:4:144:-11.5037,0,-4.27251	0/0:178:177,1:177:6062:1:36:0,-49.9851,-542.104	0/1:181:103,78:103:3533:78:2783:-196.135,0,-263.705	0/1:41:24,17:24:814:17:599:-40.7307,0,-61.2297	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:107:105,2:105:3523:2:72:0,-25.3735,-310.457	0/0:28:28,0:28:907:0:0:0,-8.42884,-81.9262	0/1:186:94,92:94:3240:92:3291:-240.358,0,-235.838	0/1:69:30,39:30:1021:39:1400:-105.528,0,-71.4241	0/0:44:43,1:43:1467:1:36:0,-9.64704,-128.721	0/1:127:57,70:57:1963:70:2512:-188.016,0,-138.715	0/0:105:105,0:105:3543:0:0:0,-31.6081,-319.091	0/0:102:101,1:101:3453:1:32:0,-27.5057,-307.793	0/1:90:33,57:33:1120:57:2039:-156.608,0,-74.0112	0/1:121:43,78:43:1436:78:2796:-215.419,0,-93.1031	0/1:238:90,148:90:3020:148:5278:-403.473,0,-200.396	0/1:15:6,9:6:204:9:324:-24.9678,0,-14.1779	0/1:113:51,62:51:1695:62:2197:-163.552,0,-118.816	0/1:36:9,27:9:312:27:972:-76.9447,0,-17.5783	0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7716	0/0:128:126,2:126:4276:2:72:0,-31.6951,-378.199	0/1:76:23,53:23:772:53:1884:-146.84,0,-46.9119	0/0:8:8,0:8:271:0:0:0,-2.40824,-24.7194	0/1:23:10,13:10:321:13:464:-35.16,0,-22.2788	0/1:69:23,46:23:771:46:1630:-126.076,0,-48.9309	0/0:89:89,0:89:2974:0:0:0,-26.7917,-267.9	0/1:11:6,5:6:212:5:176:-12.8737,0,-16.1135	0/1:168:87,81:87:2960:81:2877:-208.519,0,-216.069	0/0:141:141,0:141:4830:0:0:0,-42.4452,-434.877	0/1:70:34,36:34:1146:36:1292:-95.4052,0,-82.3663	0/0:86:86,0:86:2946:0:0:0,-25.8886,-265.382	0/1:227:92,135:92:3149:135:4840:-367.314,0,-215.311	0/0:83:83,0:83:2856:0:0:0,-24.9855,-257.286	0/1:24:11,13:11:371:13:468:-35.234,0,-26.4904	0/1:58:31,27:31:1060:27:968:-69.9538,0,-78.247	0/0:65:65,0:65:2229:0:0:0,-19.5669,-200.873	0/0:17:17,0:17:577:0:0:0,-5.11751,-52.2491	0/0:87:87,0:87:2934:0:0:0,-26.1896,-264.297	0/0:49:49,0:49:1659:0:0:0,-14.7505,-149.596	0/0:103:103,0:103:3466:0:0:0,-31.0061,-312.166	0/0:130:130,0:130:4403:0:0:0,-39.1339,-396.454	0/1:104:52,52:52:1827:52:1851:-135.373,0,-133.403	0/1:93:38,55:38:1297:55:1976:-149.824,0,-89.031	0/1:20:7,13:7:240:13:456:-35.341,0,-15.9141	0/1:124:47,77:47:1556:77:2719:-207.553,0,-102.999	0/1:146:74,71:74:2554:71:2522:-183.022,0,-186.103	0/0:200:198,2:198:6681:2:72:0,-53.3693,-594.064	0/0:78:78,0:78:2647:0:0:0,-23.4803,-238.479	0/0:50:49,1:49:1642:1:36:0,-11.4532,-144.462	0/0:46:46,0:46:1565:0:0:0,-13.8474,-141.138	0/1:124:61,63:61:2027:63:2255:-165.808,0,-145.373	0/1:50:18,32:18:613:32:1134:-87.2104,0,-40.4369	0/1:81:41,40:41:1382:40:1436:-105.082,0,-100.288	0/1:62:22,40:22:746:40:1419:-109.15,0,-48.7879	0/1:24:11,13:11:349:13:453:-33.8389,0,-24.4941	0/1:71:28,43:28:976:43:1524:-115.983,0,-66.7793	0/1:68:16,52:16:560:52:1849:-146.061,0,-30.2587	0/0:71:71,0:71:2421:0:0:0,-21.3731,-217.779	0/0:93:93,0:93:3165:0:0:0,-27.9958,-284.656
chr10	21512255	.	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chr10	22177079	.	T	C	41378.8	PASS	AB=0.466691;ABP=55.8109;AC=52;AF=0.276596;AN=188;AO=2566;CIGAR=1X;DP=10737;DPB=10737;DPRA=0.906079;EPP=5575.01;EPPR=17726.6;GTI=1;LEN=1;MEANALT=1.05172;MQM=59.9599;MQMR=59.9969;NS=94;NUMALT=1;ODDS=3.7088;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91142;QR=292109;RO=8166;RPL=0;RPP=5575.01;RPPR=17735.3;RPR=2566;RUN=1;SAF=2566;SAP=5575.01;SAR=0;SRF=8165;SRP=17726.6;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:34,29:34:1220:29:1023:-73.4168,0,-91.1419	0/0:221:221,0:221:7878:0:0:0,-66.5276,-709.045	0/0:160:160,0:160:5719:0:0:0,-48.1648,-514.828	0/1:175:79,96:79:2836:96:3420:-255.335,0,-202.798	0/1:122:62,60:62:2228:60:2128:-155.063,0,-164.058	0/1:102:56,46:56:2016:46:1628:-116.102,0,-151.008	0/1:183:103,79:103:3688:79:2812:-198.321,0,-277.124	0/0:177:177,0:177:6345:0:0:0,-53.2823,-571.138	0/1:133:71,62:71:2510:62:2185:-156.877,0,-186.113	0/1:125:83,42:83:2965:42:1483:-96.1356,0,-229.453	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/1:90:41,48:41:1472:48:1704:-126.495,0,-105.625	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:97:96,1:96:3435:1:36:0,-25.6016,-305.764	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/1:59:32,27:32:1140:27:946:-67.6921,0,-85.1484	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/0:55:55,0:55:1950:0:0:0,-16.5566,-175.775	0/1:56:35,21:35:1252:21:731:-49.2484,0,-96.1274	0/1:256:143,113:143:5128:113:4031:-285.915,0,-384.597	0/1:179:83,96:83:2964:96:3400:-252.333,0,-213.099	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.215	0/1:126:62,64:62:2217:64:2284:-167.89,0,-161.863	0/0:112:108,4:108:3854:4:140:0,-20.7708,-334.108	0/1:97:60,37:60:2156:37:1305:-88.5495,0,-165.107	0/0:304:304,0:304:10840:0:0:0,-91.5131,-975.501	0/1:300:145,155:145:5196:155:5509:-405.626,0,-377.47	0/1:42:21,21:21:752:21:752:-55.363,0,-55.363	0/0:374:373,1:373:13331:1:32:0,-109.386,-1196.39	0/1:107:59,48:59:2093:48:1703:-121.345,0,-156.428	0/0:106:106,0:106:3766:0:0:0,-31.9092,-339.138	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:26:19,7:19:669:7:237:-13.8323,0,-52.7072	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/0:238:238,0:238:8547:0:0:0,-71.6451,-769.224	0/1:136:73,63:73:2620:63:2223:-159.236,0,-195.107	0/1:103:66,37:66:2363:37:1316:-87.7357,0,-181.922	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:164:164,0:164:5872:0:0:0,-49.3689,-528.591	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.802	0/1:174:120,54:120:4280:54:1924:-121.058,0,-333	0/1:114:56,58:56:2008:58:2050:-150.453,0,-146.676	0/0:72:71,1:71:2536:1:36:0,-18.0759,-224.893	0/1:113:51,62:51:1828:62:2220:-166.048,0,-130.785	0/0:190:190,0:190:6820:0:0:0,-57.1957,-613.868	0/0:113:113,0:113:4033:0:0:0,-34.0164,-363.157	0/1:101:64,37:64:2296:37:1311:-87.8868,0,-176.497	0/1:163:81,82:81:2900:82:2907:-212.799,0,-212.168	0/1:211:123,88:123:4413:88:3148:-220.028,0,-333.822	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:143:69,74:69:2480:74:2648:-195.516,0,-180.406	0/1:83:43,40:43:1540:40:1432:-104.192,0,-113.908	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:237:237,0:237:8452:0:0:0,-71.3441,-760.687	0/1:57:28,29:28:1004:29:1032:-76.0348,0,-73.5172	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:101:57,44:57:2044:44:1568:-111.004,0,-153.828	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.817	0/1:9:3,6:3:108:6:207:-16.2576,0,-7.3659	0/1:137:75,62:75:2688:62:2212:-158.104,0,-200.923	0/0:130:130,0:130:4630:0:0:0,-39.1339,-416.862	0/1:77:52,25:52:1853:25:896:-57.781,0,-143.869	0/0:125:124,0:124:4409:0:0:0,-37.3277,-396.773	0/1:162:99,63:99:3526:63:2232:-152.364,0,-268.78	0/0:153:153,0:153:5454:0:0:0,-46.0576,-490.987	0/1:41:20,21:20:720:21:752:-55.6607,0,-52.7865	0/1:102:58,44:58:2064:44:1572:-111.067,0,-155.326	0/0:105:103,1:103:3677:1:36:0,-27.9938,-327.607	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.811	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/0:283:283,0:283:10084:0:0:0,-85.1915,-907.496	0/0:133:132,1:132:4721:1:36:0,-36.4387,-421.45	0/1:144:56,88:56:2016:88:3118:-237.499,0,-138.365	0/1:143:62,81:62:2224:81:2896:-217.829,0,-157.377	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/1:111:60,51:60:2160:51:1807:-129.497,0,-161.252	0/1:154:83,71:83:2961:71:2518:-180.513,0,-220.363	0/0:284:283,0:283:10144:0:0:0,-85.1915,-912.7	0/0:112:112,0:112:4007:0:0:0,-33.7154,-360.819	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/1:156:84,72:84:3020:72:2559:-183.53,0,-225.069	0/1:36:19,17:19:684:17:608:-44.2149,0,-51.0532	0/1:96:52,44:52:1868:44:1558:-111.611,0,-139.5	0/1:75:38,37:38:1360:37:1308:-95.4424,0,-100.123	0/1:59:39,20:39:1400:20:707:-46.1938,0,-108.538	0/1:98:45,53:45:1605:53:1895:-141.326,0,-115.237	0/1:90:34,56:34:1216:56:1957:-149.311,0,-82.6539	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/0:139:139,0:139:4976:0:0:0,-41.8432,-447.989
chr10	22177117	.	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chr10	22807516	.	A	G	32860.2	PASS	AB=0.521999;ABP=18.4878;AC=51;AF=0.274194;AN=186;AO=1932;CIGAR=1X;DP=7357;DPB=7357;DPRA=0.891872;EPP=4180.94;EPPR=11746.4;GTI=0;LEN=1;MEANALT=1.01754;MQM=59.9933;MQMR=60;NS=93;NUMALT=1;ODDS=4.29728;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68998;QR=193990;RO=5424;RPL=2;RPP=4180.94;RPPR=11737.7;RPR=1930;RUN=1;SAF=0;SAP=4198.29;SAR=1932;SRF=1;SRP=11772.4;SRR=5423;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/0:123:123,0:123:4363:0:0:0,-37.0267,-392.843	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:109:54,55:54:1936:55:1976:-145.302,0,-141.704	0/1:39:22,17:22:792:17:612:-43.6733,0,-59.8655	0/1:107:60,47:60:2160:47:1661:-117.565,0,-162.456	0/1:115:43,72:43:1540:72:2567:-196.661,0,-104.275	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.746	0/1:103:39,64:39:1386:64:2276:-174.09,0,-94.0313	0/1:86:45,41:45:1612:41:1449:-104.816,0,-119.481	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:67:37,30:37:1303:30:1080:-77.3442,0,-97.4016	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/1:49:19,30:19:684:30:1071:-81.9511,0,-47.1399	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:47:25,22:25:900:22:775:-55.9228,0,-67.1726	0/1:162:71,91:71:2541:91:3256:-244.494,0,-180.172	0/1:132:64,68:64:2300:68:2434:-179.579,0,-167.525	0/0:76:76,0:76:2712:0:0:0,-22.8783,-244.324	0/1:57:25,32:25:900:32:1144:-86.1108,0,-64.1623	0/0:67:64,3:64:2300:3:100:0,-10.8392,-197.931	0/1:54:20,34:20:720:34:1224:-94.2114,0,-48.8732	0/0:236:236,0:236:8397:0:0:0,-71.0431,-755.732	0/1:174:76,98:76:2736:98:3528:-265.348,0,-194.103	0/1:47:25,22:25:896:22:783:-56.6445,0,-66.8119	0/0:226:226,0:226:8113:0:0:0,-68.0328,-730.181	0/1:57:30,27:30:1076:27:968:-70.2787,0,-79.9941	0/0:89:89,0:89:3169:0:0:0,-26.7917,-285.434	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:222:222,0:222:7913:0:0:0,-66.8287,-712.195	0/1:128:65,63:65:2320:63:2264:-165.49,0,-170.529	0/1:94:42,51:42:1500:51:1807:-134.555,0,-106.939	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:99:97,2:97:3473:2:72:0,-22.9652,-305.943	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.61	0/1:114:54,60:54:1909:60:2148:-159.27,0,-137.768	0/1:102:53,49:53:1888:49:1760:-127.979,0,-139.493	0/0:62:62,0:62:2197:0:0:0,-18.6639,-197.994	0/1:70:39,31:39:1404:31:1112:-79.3192,0,-105.587	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/1:104:48,56:48:1709:56:2004:-149.326,0,-122.787	0/1:100:55,45:55:1968:45:1582:-112.563,0,-147.292	0/1:105:62,43:62:2207:43:1544:-107.645,0,-167.286	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:85:36,49:36:1296:49:1760:-133.096,0,-91.3564	0/1:24:10,14:10:356:14:504:-38.4734,0,-25.1565	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:111:110,1:110:3956:1:36:0,-29.8161,-352.631	0/1:23:8,15:8:284:15:540:-42.0128,0,-18.9797	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:46:25,21:25:892:21:748:-53.7979,0,-66.7523	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:125:62,63:62:2205:63:2247:-164.864,0,-161.085	0/0:142:141,1:141:5051:1:36:0,-39.148,-451.136	0/1:40:25,15:25:881:15:540:-36.8953,0,-67.5647	0/0:87:87,0:87:3117:0:0:0,-26.1896,-280.755	0/1:136:52,84:52:1868:84:3001:-229.382,0,-127.459	0/0:93:93,0:93:3324:0:0:0,-27.9958,-299.378	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:61:38,23:38:1364:23:816:-55.3989,0,-104.698	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:56:54,2:54:1940:2:72:0,-10.021,-168.039	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/0:103:103,0:103:3683:0:0:0,-31.0061,-331.673	0/1:58:32,26:32:1144:26:932:-66.7391,0,-85.8098	0/1:90:27,63:27:968:63:2222:-173.149,0,-60.3447	.:.:.:.:.:.:.:.	0/1:69:39,30:39:1400:30:1072:-76.0214,0,-105.528	0/1:101:47,54:47:1650:54:1920:-142.671,0,-118.38	0/0:193:193,0:193:6902:0:0:0,-58.0988,-621.245	0/0:98:98,0:98:3493:0:0:0,-29.5009,-314.58	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/1:142:61,81:61:2179:81:2879:-216.598,0,-153.629	0/1:52:28,24:28:1000:24:860:-62.0683,0,-74.6618	0/1:91:47,44:47:1665:44:1571:-114.287,0,-122.742	0/1:65:34,31:34:1216:31:1104:-80.1037,0,-90.1796	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:61:31,30:31:1116:30:1074:-78.607,0,-82.3889	0/1:85:29,56:29:1024:56:1999:-154.596,0,-66.885	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.915	0/0:150:149,1:149:5348:1:36:0,-41.5562,-477.853
chr10	22896728	.	A	G	11708.6	PASS	AB=0.274775;ABP=2154.92;AC=71;AF=0.37766;AN=188;AO=1497;CIGAR=1X;DP=6713;DPB=6713;DPRA=6.41182;EPP=3253.7;EPPR=11322.9;GTI=85;LEN=1;MEANALT=1.01163;MQM=28.1917;MQMR=12.6576;NS=94;NUMALT=1;ODDS=1.29951;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53495;QR=185788;RO=5213;RPL=0;RPP=3253.7;RPPR=11322.9;RPR=1497;RUN=1;SAF=1497;SAP=3253.7;SAR=0;SRF=5213;SRP=11322.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:16,3:16:576:3:104:-1.23081,0,-9.57954	0/0:120:113,7:113:4034:7:252:0,-20.3354,-100.007	0/1:99:83,16:83:2945:16:572:-5.65995,0,-52.7761	0/1:87:53,34:53:1866:34:1216:-59.7363,0,-32.5967	0/0:30:28,2:28:1004:2:72:0,-3.99856,-20.2415	0/1:25:20,5:20:708:5:176:-3.77998,0,-10.5525	0/1:49:33,16:33:1172:16:568:-25.9788,0,-20.7734	0/0:151:144,7:144:5129:7:252:0,-29.5834,-128.603	0/1:62:52,10:52:1830:10:360:-3.61386,0,-30.2774	0/1:116:97,19:97:3427:19:680:-12.4691,0,-76.0053	0/1:68:58,10:58:2046:10:360:-5.2018,0,-47.3229	0/1:59:32,27:32:1133:27:972:-42.4317,0,-12.8027	0/0:65:58,7:58:2080:7:252:0,-3.77875,-40.7537	0/1:54:37,17:37:1328:17:612:-24.5328,0,-24.1678	0/1:41:28,13:28:1004:13:468:-20.9465,0,-17.9747	0/1:31:26,5:26:936:5:180:-2.85163,0,-17.3871	0/1:48:41,7:41:1472:7:252:-1.33876,0,-27.3718	0/1:23:15,8:15:540:8:284:-11.043,0,-6.66297	1/1:16:4,12:4:144:12:424:-23.1841,-1.12011,0	0/0:111:101,10:101:3605:10:360:0,-7.3185,-89.468	0/1:112:93,19:93:3310:19:665:-11.2454,0,-66.4373	0/1:85:65,20:65:2321:20:705:-26.1675,0,-72.9619	0/0:48:43,5:43:1536:5:180:0,-1.79831,-36.1709	0/0:127:123,4:123:4392:4:144:0,-28.773,-120.779	0/1:54:47,7:47:1665:7:252:-0.695421,0,-34.7328	0/1:134:102,32:102:3652:32:1148:-45.54,0,-117.205	0/1:58:44,14:44:1584:14:504:-16.1775,0,-25.1592	0/1:30:22,8:22:792:8:288:-10.3039,0,-10.8496	0/1:238:208,30:208:7376:30:1072:-9.07711,0,-221.931	0/1:179:156,23:156:5554:23:828:-1.20651,0,-124.835	0/0:102:97,5:97:3465:5:176:0,-17.8176,-100.327	0/0:8:8,0:8:288:0:0:0,-2.40824,-9.03001	1/1:2:0,2:0:0:2:72:-5.03234,-0.60206,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-6.39372	0/0:18:18,0:18:648:0:0:0,-5.41854,-17.8571	1/1:5:0,5:0:0:5:180:-11.3478,-1.50515,0	0/1:205:160,45:160:5702:45:1616:-59.186,0,-164.885	0/1:73:44,29:44:1557:29:1013:-46.4263,0,-19.2231	0/1:49:36,13:36:1292:13:468:-14.359,0,-20.9485	0/0:1:1,0:1:36:0:0:0,-0.30103,-1.29794	0/1:85:70,15:70:2501:15:540:-10.5128,0,-41.8782	0/1:25:17,8:17:608:8:288:-11.6432,0,-7.85781	0/1:70:61,9:61:2184:9:324:-0.646421,0,-46.5201	0/1:37:30,7:30:1053:7:244:-6.6082,0,-22.1885	0/1:69:54,15:54:1940:15:540:-15.2225,0,-40.9305	0/1:61:45,16:45:1578:16:576:-24.7134,0,-49.8103	0/0:118:106,12:106:3770:12:432:0,-8.63227,-81.1548	0/0:152:137,15:137:4875:15:540:0,-8.45674,-112.93	0/1:31:21,10:21:718:10:360:-16.3399,0,-14.7099	0/1:100:85,15:85:3056:15:540:-8.26371,0,-66.2652	0/1:83:43,40:43:1544:40:1432:-78.5096,0,-38.8795	0/0:6:6,0:6:216:0:0:0,-1.80618,-6.86488	0/1:43:30,13:30:1076:13:464:-16.039,0,-16.5033	0/0:50:46,4:46:1644:4:144:0,-4.02272,-49.4332	0/0:10:10,0:10:348:0:0:0,-3.0103,-9.35927	0/0:162:150,12:150:5361:12:428:0,-20.1037,-137.494	0/1:10:7,3:7:252:3:108:-4.55816,0,-4.65935	0/0:13:12,1:12:432:1:36:0,-0.932638,-15.2849	0/1:12:7,5:7:252:5:180:-10.0991,0,-6.7798	0/0:63:57,6:57:2048:6:216:0,-4.39759,-49.9762	0/1:121:75,46:75:2654:46:1644:-80.1846,0,-45.3111	0/1:3:1,2:1:36:2:72:-4.45696,0,-0.295293	0/1:225:76,149:76:2713:149:5325:-326.115,0,-46.955	0/1:144:121,23:121:4317:23:824:-15.0049,0,-95.0227	0/0:56:51,5:51:1832:5:180:0,-4.84128,-45.7293	0/1:50:41,9:41:1456:9:324:-8.08137,0,-28.7359	0/1:75:47,28:47:1680:28:996:-48.4983,0,-28.0485	0/1:127:94,33:94:3353:33:1188:-45.9112,0,-67.6314	1/1:19:5,14:5:176:14:500:-28.9817,-1.12544,0	0/1:18:13,5:13:468:5:176:-5.88719,0,-8.0979	0/1:51:35,16:35:1256:16:572:-26.5582,0,-36.8466	0/0:31:31,0:31:1112:0:0:0,-9.33193,-37.2602	0/0:121:118,3:118:4220:3:108:0,-29.6928,-111.642	0/1:116:98,18:98:3471:18:648:-4.95052,0,-61.5977	0/0:154:141,13:141:5003:13:464:0,-14.7856,-120.954	0/1:167:114,50:114:4057:50:1761:-76.5801,0,-79.6037	0/1:41:23,18:23:794:18:648:-27.8683,0,-13.2473	0/1:88:45,43:45:1616:43:1523:-68.6425,0,-24.6908	0/0:13:12,1:12:428:1:36:0,-1.44648,-11.183	0/1:31:19,12:19:665:12:428:-19.3113,0,-7.8236	0/1:50:28,22:28:989:22:773:-33.8626,0,-11.8559	0/1:143:120,23:120:4280:23:824:-14.9663,0,-87.4591	0/1:119:105,14:105:3741:14:504:-0.268004,0,-85.8121	0/1:43:30,13:30:1064:13:464:-20.0996,0,-19.5231	0/0:35:32,3:32:1148:3:108:0,-2.63702,-30.53	0/1:86:70,16:70:2516:16:572:-14.9289,0,-60.0986	0/0:15:15,0:15:536:0:0:0,-4.51545,-14.3986	0/1:44:27,17:27:968:17:599:-24.3713,0,-13.7448	0/1:43:22,21:22:776:21:748:-33.8442,0,-8.65287	0/1:19:16,3:16:572:3:104:-1.6333,0,-10.3902	0/1:73:56,17:56:2000:17:599:-18.3046,0,-39.4801	0/1:41:33,8:33:1184:8:288:-8.16881,0,-26.0459	0/1:265:151,114:151:5374:114:4088:-208.563,0,-89.5344	0/1:77:41,36:41:1476:36:1288:-67.8897,0,-22.3797
chr10	23114020	.	T	C	162815	PASS	AB=0.485076;ABP=41.3799;AC=52;AF=0.276596;AN=188;AO=9655;CIGAR=1X;DP=35203;DPB=35203;DPRA=2.79212;EPP=20968.6;EPPR=55451.6;GTI=0;LEN=1;MEANALT=1.1791;MQM=59.6883;MQMR=59.8124;NS=94;NUMALT=1;ODDS=27.2073;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=345878;QR=914892;RO=25535;RPL=0;RPP=20968.6;RPPR=55451.6;RPR=9655;RUN=1;SAF=9655;SAP=20968.6;SAR=0;SRF=25535;SRP=55451.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:21,19:21:752:19:680:-49.4798,0,-55.9651	0/0:740:739,1:739:26503:1:36:0,-219.164,-2380.58	0/0:166:166,0:166:5960:0:0:0,-49.971,-536.459	0/1:260:142,118:142:5036:118:4225:-302.111,0,-375.108	0/1:164:64,100:64:2292:100:3592:-274.109,0,-157.172	0/1:121:59,61:59:2105:61:2184:-160.46,0,-153.381	0/1:180:92,88:92:3266:88:3129:-227.642,0,-239.941	0/0:320:320,0:320:11482:0:0:0,-96.3296,-1033.07	0/1:98:43,55:43:1548:55:1968:-147.801,0,-110.112	0/1:133:73,60:73:2624:60:2156:-154.262,0,-196.362	0/0:528:527,1:527:18907:1:36:0,-155.355,-1696.07	0/1:71:30,41:30:1076:41:1468:-111.035,0,-75.7716	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.882	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.42	0/1:73:35,38:35:1241:38:1355:-100.275,0,-90.0091	0/0:72:72,0:72:2576:0:0:0,-21.6742,-231.995	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.889	0/1:254:124,130:124:4452:130:4656:-342.667,0,-324.362	0/1:377:199,178:199:7148:178:6376:-460.405,0,-529.833	0/1:200:108,92:108:3861:92:3296:-236.62,0,-287.462	0/0:169:169,0:169:6061:0:0:0,-50.8741,-545.554	0/1:56:18,38:18:640:38:1360:-105.835,0,-41.0716	0/0:109:102,7:102:3656:7:252:0,-9.78331,-306.198	0/1:111:56,55:56:1993:55:1968:-143.981,0,-146.219	0/0:326:326,0:326:11648:0:0:0,-98.1358,-1048.16	0/1:319:153,166:153:5500:166:5942:-438.825,0,-399.067	0/1:29:13,16:13:468:16:563:-42.2693,0,-33.7298	0/0:498:498,0:498:17858:0:0:0,-149.913,-1606.76	0/1:638:358,279:358:12826:279:10020:-709.732,0,-962.118	0/0:148:147,1:147:5224:1:36:0,-40.9542,-466.626	0/0:1032:1028,4:1028:36874:4:144:0,-297.349,-3303.36	0/1:1289:624,663:624:22357:663:23737:-1747.56,0,-1623.55	0/0:1018:1016,1:1016:36342:1:36:0,-302.834,-3265.62	0/0:2260:2256,4:2256:80739:4:144:0,-667.037,-7249.46	0/1:1330:671,659:671:24086:659:23624:-1724.96,0,-1766.54	0/0:166:166,0:166:5960:0:0:0,-49.971,-536.472	0/1:221:122,99:122:4371:99:3544:-252.609,0,-326.994	0/1:568:290,278:290:10432:278:9979:-726.665,0,-767.765	0/1:782:388,393:388:13883:393:14101:-1032.94,0,-1013.36	0/0:323:318,5:318:11410:5:180:0,-80.6806,-1010.18	0/0:273:271,1:271:9732:1:36:0,-78.6241,-871.807	0/1:180:67,113:67:2389:113:4060:-311.392,0,-161.08	0/1:65:26,39:26:936:39:1404:-107.084,0,-64.9925	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.587	0/1:125:48,77:48:1709:77:2768:-211.406,0,-116.457	0/0:180:180,0:180:6457:0:0:0,-54.1854,-581.188	0/0:264:264,0:264:9438:0:0:0,-79.4719,-849.235	0/1:84:41,43:41:1464:43:1544:-113.967,0,-106.761	0/1:196:108,88:108:3853:88:3145:-224.247,0,-287.963	0/1:263:121,142:121:4322:142:5073:-377.542,0,-309.641	0/1:3340:2095,1245:2095:74986:1245:44548:-3001.5,0,-5739.55	0/1:537:250,287:250:8942:287:10251:-760.685,0,-643.022	0/1:84:39,45:39:1381:45:1612:-120.084,0,-99.2917	0/0:982:981,1:981:35103:1:36:0,-292.022,-3154.02	0/0:198:198,0:198:7093:0:0:0,-59.6039,-638.411	0/1:63:18,45:18:648:45:1596:-124.941,0,-39.687	0/0:1755:1754,1:1754:62893:1:36:0,-524.709,-5652.45	0/1:1840:946,894:946:33879:894:32033:-2327.05,0,-2493.73	0/1:143:65,78:65:2328:78:2792:-208.452,0,-166.706	0/0:104:104,0:104:3736:0:0:0,-31.3071,-336.418	0/1:788:426,360:426:15246:360:12898:-923.632,0,-1134.94	0/1:190:95,94:95:3397:94:3364:-245.713,0,-248.728	0/0:343:343,0:343:12317:0:0:0,-103.253,-1107.99	0/1:91:57,34:57:2044:34:1220:-82.7016,0,-156.83	0/0:228:228,0:228:8200:0:0:0,-68.6348,-737.988	0/1:171:97,74:97:3469:74:2647:-186.905,0,-260.928	0/0:250:245,4:245:8807:4:144:0,-62.002,-779.171	0/1:426:193,233:193:6924:233:8316:-620.129,0,-494.931	0/1:111:52,59:52:1872:59:2120:-157.63,0,-135.327	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.926	0/0:1353:1352,1:1352:48415:1:36:0,-403.695,-4351.7	0/0:104:104,0:104:3714:0:0:0,-31.3071,-334.446	0/0:79:77,1:77:2757:1:36:0,-20.2414,-244.738	0/0:193:193,0:193:6925:0:0:0,-58.0988,-623.277	0/0:274:274,0:274:9844:0:0:0,-82.4822,-885.887	0/1:252:119,133:119:4268:133:4756:-352.319,0,-308.413	0/1:196:82,114:82:2940:114:4092:-309.353,0,-205.793	0/1:1209:573,635:573:20566:635:22816:-1688.67,0,-1486.46	0/1:199:93,106:93:3321:106:3804:-282.628,0,-239.202	0/1:205:74,131:74:2656:131:4696:-361.064,0,-177.566	0/0:233:233,0:233:8345:0:0:0,-70.14,-751.038	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.921	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.659	0/1:99:54,45:54:1940:45:1616:-115.928,0,-145.066	0/1:33:14,19:14:500:19:680:-51.5952,0,-35.4022	0/1:72:43,29:43:1548:29:1032:-71.5079,0,-117.931	0/1:51:26,25:26:936:25:896:-65.5996,0,-69.1988	0/1:501:224,277:224:8026:277:9943:-743.603,0,-571.479	0/1:923:457,466:457:16401:466:16681:-1222.92,0,-1197.47	0/1:83:18,65:18:648:65:2328:-184.786,0,-33.6664	0/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chr10	23114026	.	G	T	525304	PASS	AB=0.51071;ABP=22.7324;AC=136;AF=0.723404;AN=188;AO=25270;CIGAR=1X;DP=35014;DPB=35014;DPRA=0;EPP=54876.1;EPPR=21053.3;GTI=0;LEN=1;MEANALT=1.29787;MQM=59.8125;MQMR=59.7001;NS=94;NUMALT=1;ODDS=24.4325;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=905289;QR=346034;RO=9694;RPL=0;RPP=54876.1;RPPR=21053.3;RPR=25270;RUN=1;SAF=25270;SAP=54876.1;SAR=0;SRF=9694;SRP=21053.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:19,20:19:650:20:720:-53.3886,0,-47.076	1/1:725:1,723:1:36:723:25890:-2325.5,-214.707,0	1/1:164:0,164:0:0:164:5870:-528.363,-49.3689,0	0/1:260:119,139:119:4207:139:4973:-369.668,0,-300.762	0/1:164:100,64:100:3554:64:2296:-157.532,0,-270.698	0/1:126:65,61:65:2332:61:2179:-158.446,0,-172.18	0/1:180:89,91:89:3177:91:3256:-239.043,0,-231.964	1/1:322:0,322:0:0:322:11526:-1037.02,-96.9317,0	0/1:100:57,43:57:2006:43:1544:-109.15,0,-150.679	0/1:132:63,69:63:2245:69:2464:-182.27,0,-162.25	1/1:521:0,520:0:0:520:18643:-1675.91,-156.536,0	0/1:68:38,30:38:1360:30:1080:-77.035,0,-102.222	1/1:46:0,46:0:0:46:1643:-148.158,-13.8474,0	1/1:70:0,70:0:0:70:2520:-227.043,-21.0721,0	1/1:59:0,59:0:0:59:2112:-190.341,-17.7608,0	0/1:72:37,35:37:1328:35:1260:-92.0313,0,-98.1481	1/1:70:0,70:0:0:70:2507:-225.787,-21.0721,0	1/1:62:0,61:0:0:61:2192:-197.169,-18.3628,0	0/1:257:131,126:131:4677:126:4518:-329.384,0,-343.694	0/1:374:176,198:176:6280:198:7058:-522.64,0,-452.675	0/1:196:90,104:90:3220:104:3736:-277.647,0,-231.247	1/1:173:0,173:0:0:173:6207:-558.703,-52.0782,0	0/1:56:38,18:38:1364:18:648:-41.7942,0,-106.195	1/1:110:7,103:7:252:103:3683:-308.627,-10.0843,0	0/1:110:54,56:54:1924:56:2004:-147.51,0,-140.324	1/1:319:0,318:0:0:318:11392:-1024.76,-95.7275,0	0/1:316:162,154:162:5770:154:5524:-402.126,0,-424.27	0/1:29:16,13:16:568:13:468:-33.7298,0,-42.722	1/1:496:0,495:0:0:495:17755:-1597.14,-149.01,0	0/1:631:280,351:280:10014:351:12529:-937.402,0,-711.22	1/1:143:1,141:1:36:141:5072:-452.372,-39.5078,0	1/1:1023:4,1019:4:144:1019:36545:-3273.8,-294.64,0	0/1:1287:668,619:668:23825:619:22201:-1609.52,0,-1755.61	1/1:1013:1,1011:1:36:1011:36163:-3249.81,-301.329,0	1/1:2236:2,2233:2:72:2233:79989:-7188.67,-666.325,0	0/1:1327:662,661:662:23638:661:23698:-1733.36,0,-1727.89	1/1:162:0,162:0:0:162:5820:-523.886,-48.7669,0	0/1:222:101,121:101:3609:121:4348:-324.624,0,-258.153	0/1:565:279,286:279:10008:286:10259:-753.11,0,-730.173	0/1:779:391,383:391:13990:383:13712:-1000.08,0,-1025.1	1/1:323:5,315:5:180:315:11290:-999.397,-80.1374,0	1/1:271:1,270:1:36:270:9697:-868.624,-77.9809,0	0/1:177:112,65:112:4028:65:2332:-156.857,0,-309.416	0/1:65:39,26:39:1377:26:932:-64.6319,0,-104.652	1/1:64:0,63:0:0:63:2247:-202.105,-18.9649,0	0/1:121:74,47:74:2630:47:1688:-115.774,0,-200.194	1/1:176:0,175:0:0:175:6281:-565.15,-52.6803,0	1/1:256:0,256:0:0:256:9140:-822.441,-77.0637,0	0/1:85:44,41:44:1565:41:1474:-107.364,0,-115.552	0/1:193:87,106:87:3124:106:3812:-285.177,0,-223.27	0/1:261:141,120:141:5048:120:4289:-307.276,0,-375.888	0/1:3329:1246,2080:1246:44397:2080:74526:-5702.08,0,-2992.1	0/1:540:291,249:291:10406:249:8897:-638.075,0,-773.657	0/1:83:44,39:44:1576:39:1376:-99.1418,0,-117.146	1/1:967:0,967:0:0:967:34661:-3117.85,-291.096,0	1/1:197:0,197:0:0:197:7084:-637.597,-59.3029,0	0/1:63:45,18:45:1612:18:644:-39.3257,0,-126.386	1/1:1743:1,1735:1:36:1735:62191:-5590.36,-519.346,0	0/1:1841:900,940:900:32059:940:33678:-2475.4,0,-2328.98	0/1:140:77,63:77:2741:63:2241:-159.799,0,-204.771	1/1:103:0,103:0:0:103:3696:-332.82,-31.0061,0	0/1:801:377,423:377:13424:423:15144:-1121.54,0,-966.751	0/1:193:99,94:99:3529:94:3376:-245.956,0,-259.671	1/1:342:0,340:0:0:340:12174:-1094.78,-102.35,0	0/1:90:33,57:33:1154:57:2048:-157.491,0,-77.0581	1/1:225:0,225:0:0:225:8061:-725.495,-67.7318,0	0/1:165:71,94:71:2533:94:3368:-253.65,0,-178.455	1/1:246:4,242:4:144:242:8642:-764.425,-60.7398,0	0/1:433:237,196:237:8491:196:7029:-502.276,0,-633.461	0/1:110:59,51:59:2120:51:1826:-131.505,0,-157.931	1/1:78:0,78:0:0:78:2804:-252.567,-23.4803,0	1/1:1343:1,1335:1:36:1335:47783:-4294.94,-398.932,0	1/1:104:0,104:0:0:104:3728:-335.708,-31.3071,0	1/1:77:1,76:1:36:76:2692:-238.897,-19.581,0	1/1:188:0,188:0:0:188:6708:-603.768,-56.5936,0	1/1:270:0,270:0:0:270:9704:-873.296,-81.2781,0	0/1:251:133,116:133:4738:116:4151:-298.513,0,-351.31	0/1:195:114,81:114:4069:81:2889:-201.514,0,-307.575	0/1:1210:641,569:641:22898:569:20384:-1469.73,0,-1695.7	0/1:197:107,90:107:3836:90:3223:-230.989,0,-286.109	0/1:203:130,73:130:4649:73:2608:-173.851,0,-357.437	1/1:232:0,232:0:0:232:8303:-747.262,-69.839,0	1/1:90:0,90:0:0:90:3221:-290.094,-27.0927,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	1/1:60:0,60:0:0:60:2156:-194.299,-18.0618,0	0/1:99:45,54:45:1616:54:1938:-144.889,0,-115.928	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/1:70:28,42:28:1000:42:1500:-114.214,0,-69.2351	0/1:50:24,26:24:860:26:936:-69.4998,0,-62.6622	0/1:499:276,223:276:9879:223:8000:-569.774,0,-738.452	0/1:926:473,452:473:16921:452:16192:-1178.06,0,-1243.54	0/1:81:63,18:63:2244:18:644:-33.9072,0,-177.832	1/1:28:0,28:0:0:28: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chr10	23114075	.	G	A	55009.6	PASS	AB=0.52706;ABP=41.6749;AC=51;AF=0.271277;AN=188;AO=3248;CIGAR=1X;DP=11447;DPB=11447;DPRA=1.54543;EPP=7055.95;EPPR=17772.2;GTI=2;LEN=1;MEANALT=1.17188;MQM=59.8082;MQMR=59.9434;NS=94;NUMALT=1;ODDS=0.00680301;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115746;QR=289544;RO=8183;RPL=1;RPP=7047.27;RPPR=17720.1;RPR=3247;RUN=1;SAF=1;SAP=7047.27;SAR=3247;SRF=6;SRP=17720.1;SRR=8177;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:70:32,38:32:1114:38:1359:-101.524,0,-79.4911	0/0:87:87,0:87:3115:0:0:0,-26.1896,-280.576	0/0:232:229,1:229:8086:1:36:0,-65.9984,-724.166	0/1:335:152,183:152:5401:183:6541:-487.927,0,-385.373	0/1:125:40,85:40:1440:85:3035:-235.699,0,-92.269	0/1:79:40,39:40:1432:39:1388:-101.381,0,-105.396	0/1:213:104,109:104:3649:109:3898:-286.893,0,-263.937	0/0:200:198,2:198:7041:2:72:0,-53.3693,-626.861	0/1:170:69,101:69:2451:101:3609:-273.812,0,-169.67	0/1:162:97,64:97:3401:64:2257:-154.564,0,-256.541	0/0:44:44,0:44:1546:0:0:0,-13.2453,-138.873	0/1:108:45,63:45:1590:63:2249:-170.143,0,-110.878	0/0:67:67,0:67:2380:0:0:0,-20.169,-214.459	0/0:49:48,1:48:1691:1:36:0,-11.1522,-148.874	0/0:87:87,0:87:3066:0:0:0,-26.1896,-276.166	0/1:67:30,37:30:1045:37:1320:-98.9314,0,-74.1888	0/0:80:80,0:80:2810:0:0:0,-24.0824,-253.139	0/0:60:59,0:59:2073:0:0:0,-17.7608,-186.478	0/1:34:17,17:17:590:17:604:-44.4513,0,-43.1891	0/1:319:159,160:159:5668:160:5730:-419.78,0,-414.211	0/1:178:95,83:95:3367:83:2977:-214.579,0,-249.662	0/0:161:156,5:156:5520:5:180:0,-31.9138,-480.351	0/1:80:35,45:35:1237:45:1594:-119.666,0,-87.5499	0/0:240:221,19:221:7896:19:675:0,-11.1702,-649.53	0/1:100:35,62:35:1244:62:2195:-168.249,0,-82.7053	0/0:478:477,1:477:16902:1:36:0,-140.294,-1517.24	0/1:326:164,162:164:5813:162:5759:-420.024,0,-425.15	0/1:44:21,23:21:736:23:824:-61.238,0,-53.3171	0/0:289:289,0:289:10279:0:0:0,-86.9977,-925.04	0/1:73:57,16:57:1988:16:567:-29.3855,0,-157.214	0/0:164:164,0:164:5823:0:0:0,-49.3689,-524.186	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:8:8,0:8:271:0:0:0,-2.40824,-24.7194	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:205:205,0:205:7224:0:0:0,-61.7111,-650.219	0/1:198:98,100:98:3459:100:3521:-257.483,0,-251.919	0/1:56:31,25:31:1112:25:883:-62.9197,0,-83.516	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:195:195,0:195:6906:0:0:0,-58.7008,-621.505	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:359:157,202:157:5552:202:7231:-542.766,0,-391.738	0/1:79:37,42:37:1310:42:1476:-109.315,0,-94.4187	0/0:71:71,0:71:2531:0:0:0,-21.3731,-228.041	0/1:157:82,75:82:2908:75:2696:-195.622,0,-214.693	0/0:165:165,0:165:5811:0:0:0,-49.6699,-522.79	0/0:262:257,4:257:9109:4:144:0,-65.615,-806.472	0/1:166:76,90:76:2696:90:3189:-237.261,0,-192.912	0/1:153:54,99:54:1944:99:3544:-273.107,0,-129.178	0/1:260:124,136:124:4395:136:4853:-358.61,0,-317.457	0/1:3:1,2:1:36:2:72:-5.1953,0,-2.07766	0/1:163:65,98:65:2315:98:3493:-265.493,0,-159.542	0/1:59:24,35:24:864:35:1252:-95.2235,0,-60.3218	0/0:15:15,0:15:515:0:0:0,-4.51545,-46.6725	0/0:152:152,0:152:5313:0:0:0,-45.7566,-478.308	0/1:66:40,25:40:1427:25:900:-61.3493,0,-108.755	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:7:4,3:4:140:3:104:-7.5956,0,-10.7035	0/1:55:33,22:33:1175:22:792:-55.0457,0,-89.5003	0/0:109:108,1:108:3824:1:27:0,-30.1125,-341.656	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:248:92,155:92:3295:155:5560:-425.884,0,-222.202	0/0:192:191,1:191:6755:1:36:0,-54.1995,-604.43	0/1:74:46,28:46:1621:28:1004:-68.3996,0,-123.901	0/0:119:117,1:117:4159:1:32:0,-32.6621,-371.273	0/1:159:71,87:71:2533:87:3089:-230.232,0,-180.279	0/0:54:54,0:54:1890:0:0:0,-16.2556,-170.374	0/1:14:3,11:3:108:11:396:-31.6614,0,-5.86075	0/1:76:46,30:46:1619:30:1055:-72.3808,0,-123.117	0/0:85:85,0:85:2960:0:0:0,-25.5875,-266.541	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:169:167,2:167:5869:2:72:0,-44.0373,-521.486	0/0:55:55,0:55:1944:0:0:0,-16.5566,-175.234	0/0:215:214,1:214:7531:1:36:0,-61.1232,-672.564	0/0:216:215,1:215:7605:1:36:0,-61.4242,-680.893	0/1:201:121,80:121:4302:80:2861:-197.174,0,-326.852	0/1:138:64,74:64:2264:74:2634:-195.761,0,-162.479	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:160:70,89:70:2498:89:3174:-237.652,0,-176.848	0/1:216:93,121:93:3296:121:4337:-325.6,0,-232.131	0/0:355:355,0:355:12508:0:0:0,-106.866,-1125.56	0/0:120:120,0:120:4255:0:0:0,-36.1236,-383.129	0/0:59:58,1:58:2056:1:36:0,-14.1625,-181.711	0/0:100:100,0:100:3468:0:0:0,-30.103,-312.329	0/1:162:82,80:82:2902:80:2833:-206.425,0,-212.647	0/1:56:28,28:28:1004:28:974:-71.1105,0,-73.8182	0/1:72:31,40:31:1108:40:1419:-106.273,0,-78.2981	0/1:83:31,52:31:1088:52:1833:-140.257,0,-73.241	0/1:21:4,17:4:144:17:608:-48.7304,0,-6.99199	0/1:46:22,24:22:769:24:826:-60.8043,0,-55.6812	0/1:78:37,41:37:1300:41:1453:-107.584,0,-93.8181	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.9198	0/0:125:125,0:125:4403:0:0:0,-37.6287,-396.447
chr10	23356727	.	T	G	22863.6	PASS	AB=0.489195;ABP=7.42113;AC=51;AF=0.274194;AN=186;AO=2139;CIGAR=1X;DP=8657;DPB=8657;DPRA=1.123;EPP=4647.79;EPPR=14130.6;GTI=3;LEN=1;MEANALT=1;MQM=30.5526;MQMR=42.3977;NS=93;NUMALT=1;ODDS=0.0163664;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76466;QR=233337;RO=6518;RPL=0;RPP=4647.79;RPPR=14130.6;RPR=2139;RUN=1;SAF=2139;SAP=4647.79;SAR=0;SRF=6518;SRP=14156.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:36,32:36:1279:32:1144:-63.5558,0,-90.3946	0/0:83:83,0:83:2973:0:0:0,-24.9855,-259.332	0/0:253:253,0:253:9080:0:0:0,-76.1606,-795.429	0/1:197:108,89:108:3856:89:3170:-171.65,0,-278.314	0/1:55:22,33:22:792:33:1184:-70.3195,0,-53.5114	0/1:50:16,34:16:576:34:1216:-76.509,0,-36.0731	0/1:138:85,53:85:3044:53:1908:-97.0511,0,-224.094	0/0:91:91,0:91:3264:0:0:0,-27.3937,-285.92	0/1:156:72,84:72:2592:84:2982:-171.383,0,-179.618	0/1:76:30,46:30:1076:46:1644:-97.2751,0,-71.7122	0/0:19:19,0:19:684:0:0:0,-5.71957,-59.1836	0/1:53:24,29:24:860:29:1044:-61.0437,0,-60.0428	0/0:50:50,0:50:1796:0:0:0,-15.0515,-157.201	0/0:28:28,0:28:1008:0:0:0,-8.42884,-88.9757	0/0:62:62,0:62:2232:0:0:0,-18.6639,-194.338	0/1:29:18,11:18:644:11:396:-20.2978,0,-46.4611	0/0:37:37,0:37:1317:0:0:0,-11.1381,-115.353	0/0:19:19,0:19:669:0:0:0,-5.71957,-59.204	0/1:18:9,9:9:320:9:324:-18.3841,0,-22.5815	0/1:173:86,87:86:3088:87:3101:-173.361,0,-215.19	0/1:166:72,94:72:2584:94:3356:-194.312,0,-176.912	0/0:188:188,0:188:6732:0:0:0,-56.5936,-591.937	0/1:142:74,68:74:2622:68:2444:-135.089,0,-187.248	0/0:47:46,1:46:1644:1:36:0,-11.2456,-141.918	0/1:96:48,48:48:1724:48:1709:-96.1737,0,-120.695	0/0:282:282,0:282:10043:0:0:0,-84.8905,-883.668	0/1:299:144,155:144:5153:155:5552:-315.815,0,-360.869	0/1:21:11,10:11:396:10:360:-20.0935,0,-28.1674	0/0:266:266,0:266:9535:0:0:0,-80.074,-838.863	0/1:156:81,75:81:2900:75:2700:-151.147,0,-208.639	0/0:129:129,0:129:4594:0:0:0,-38.8329,-400.008	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.85882	0/1:11:4,7:4:144:7:252:-15.5268,0,-9.7164	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.68992	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.0992	0/1:4:3,1:3:108:1:36:-1.69864,0,-8.72682	0/0:129:129,0:129:4619:0:0:0,-38.8329,-406.116	0/1:143:72,71:72:2584:71:2537:-143.687,0,-180.922	0/1:20:11,9:11:396:9:324:-17.7821,0,-28.0791	0/1:2:1,1:1:32:1:36:-2.3007,0,-2.56476	0/0:136:134,2:134:4795:2:72:0,-35.4248,-412.635	0/0:18:18,0:18:648:0:0:0,-5.41854,-56.6742	0/1:132:48,84:48:1724:84:2982:-178.637,0,-110.695	0/1:35:20,15:20:720:15:521:-28.0383,0,-52.1212	0/0:52:52,0:52:1846:0:0:0,-15.6536,-160.612	0/1:139:72,67:72:2576:67:2389:-140.192,0,-183.377	0/0:97:96,1:96:3440:1:36:0,-26.2971,-297.353	0/0:239:238,1:238:8536:1:36:0,-69.0434,-738.36	0/1:117:67,50:67:2400:50:1788:-96.181,0,-175.183	0/1:70:37,33:37:1324:33:1158:-63.6586,0,-95.4414	0/1:108:54,54:54:1944:54:1940:-115.364,0,-139.754	0/1:3:2,1:2:72:1:36:-1.99967,0,-5.75204	0/1:168:88,80:88:3164:80:2850:-156.913,0,-225.235	0/1:79:51,28:51:1824:28:996:-52.5686,0,-137.883	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.1966	0/0:235:234,1:234:8392:1:36:0,-67.8393,-732.332	0/1:58:29,29:29:1040:29:1036:-58.7199,0,-73.6274	0/0:9:9,0:9:324:0:0:0,-2.70927,-27.0594	0/1:9:6,3:6:216:3:108:-5.70178,0,-16.6363	0/1:76:44,32:44:1584:32:1148:-61.7931,0,-115.449	0/0:50:50,0:50:1800:0:0:0,-15.0515,-156.229	.:.:.:.:.:.:.:.	0/1:188:95,93:95:3400:93:3329:-195.868,0,-242.918	0/0:179:177,2:177:6287:2:72:0,-48.3691,-542.835	0/1:52:27,25:27:972:25:885:-49.7359,0,-70.0805	0/0:97:96,1:96:3436:1:36:0,-26.2971,-294.009	0/1:197:117,80:117:4155:80:2849:-148.412,0,-302.014	0/0:191:191,0:191:6848:0:0:0,-57.4967,-597.129	0/1:7:3,4:3:108:4:144:-8.63302,0,-7.75161	0/1:54:28,26:28:1008:26:928:-51.7514,0,-72.1604	0/0:46:46,0:46:1652:0:0:0,-13.8474,-146.205	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.7388	0/0:209:209,0:209:7489:0:0:0,-62.9153,-656.41	0/0:75:75,0:75:2673:0:0:0,-22.5772,-234.006	0/0:146:146,0:146:5187:0:0:0,-43.9504,-454.437	0/0:175:175,0:175:6280:0:0:0,-52.6802,-547.311	0/1:111:55,56:55:1961:56:2004:-113.632,0,-138.582	0/1:72:35,37:35:1252:37:1332:-74.8847,0,-87.8859	0/1:11:8,3:8:288:3:108:-4.81641,0,-22.392	0/1:123:65,58:65:2313:58:2088:-114.788,0,-165.369	0/1:134:83,51:83:2976:51:1832:-93.3328,0,-220.823	0/0:243:242,1:242:8676:1:36:0,-70.2475,-752.425	0/0:64:64,0:64:2304:0:0:0,-19.2659,-201.191	0/0:51:51,0:51:1832:0:0:0,-15.3525,-159.718	0/0:39:39,0:39:1395:0:0:0,-11.7402,-121.109	0/1:82:41,41:41:1468:41:1472:-81.6407,0,-103.084	0/1:26:20,6:20:720:6:216:-8.13842,0,-55.9035	0/1:54:20,34:20:720:34:1212:-73.387,0,-46.3556	0/1:57:32,25:32:1148:25:900:-49.0725,0,-84.2279	0/1:13:2,11:2:72:11:392:-25.0097,0,-2.77653	0/1:48:29,19:29:1036:19:680:-35.4582,0,-74.6259	0/1:54:17,37:17:603:37:1328:-80.905,0,-35.2984	0/0:188:187,1:187:6693:1:36:0,-53.6909,-578.649	0/0:62:62,0:62:2228:0:0:0,-18.6639,-194.484
chr10	23356810	.	T	C	35397	PASS	AB=0.501962;ABP=3.16371;AC=53;AF=0.284946;AN=186;AO=2316;CIGAR=1X;DP=9500;DPB=9500;DPRA=0.842392;EPP=5032.14;EPPR=15600.7;GTI=4;LEN=1;MEANALT=1.01724;MQM=39.5082;MQMR=58.6912;NS=93;NUMALT=1;ODDS=0.695094;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82686;QR=256343;RO=7183;RPL=0;RPP=5032.14;RPPR=15600.7;RPR=2316;RUN=1;SAF=0;SAP=5032.14;SAR=2316;SRF=0;SRP=15600.7;SRR=7183;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:17,14:17:600:14:496:-33.5105,0,-44.9834	0/0:213:213,0:213:7597:0:0:0,-64.1194,-682.883	0/0:136:136,0:136:4853:0:0:0,-40.9401,-435.239	0/1:160:85,75:85:3039:75:2696:-182.327,0,-225.544	0/1:65:31,34:31:1108:34:1216:-85.9459,0,-80.3999	0/1:64:28,36:28:996:36:1288:-92.8771,0,-70.6627	0/1:77:26,51:26:920:51:1807:-130.127,0,-59.8168	0/0:283:283,0:283:10124:0:0:0,-85.1915,-908.326	0/1:61:27,34:27:964:34:1212:-87.5947,0,-68.4957	0/1:79:38,41:38:1364:41:1450:-100.293,0,-99.2509	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.101	0/1:58:21,37:21:744:37:1307:-96.8761,0,-49.7357	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.084	0/0:88:88,0:88:3156:0:0:0,-26.4906,-283.81	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.227	0/1:40:24,16:24:860:16:576:-36.6864,0,-65.5992	0/0:53:53,0:53:1904:0:0:0,-15.9546,-170.574	0/0:53:53,0:53:1879:0:0:0,-15.9546,-168.605	0/1:28:18,10:18:648:10:360:-23.2455,0,-50.0588	0/1:228:112,116:112:4008:116:4143:-285.4,0,-292.239	0/1:107:59,48:59:2099:48:1716:-115.162,0,-156.618	0/0:157:157,0:157:5563:0:0:0,-47.2617,-500.141	0/1:62:34,28:34:1224:28:996:-67.1331,0,-91.7464	0/0:96:93,3:93:3336:3:108:0,-19.2263,-290.626	0/1:110:51,59:51:1824:59:2104:-147.281,0,-130.971	0/0:393:393,0:393:14025:0:0:0,-118.305,-1260.98	0/1:176:93,83:93:3311:83:2984:-203.049,0,-245.05	0/1:28:13,15:13:468:15:520:-37.09,0,-34.0308	0/0:246:245,1:245:8764:1:36:0,-70.6298,-785.011	0/1:245:141,104:141:5032:104:3736:-249.167,0,-377.842	0/0:154:154,0:154:5466:0:0:0,-46.3586,-491.507	0/1:2:1,1:1:32:1:36:-2.85243,0,-2.59725	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.1209	1/1:5:0,5:0:0:5:180:-16.0112,-1.50515,0	0/0:143:143,0:143:5132:0:0:0,-43.0473,-461.91	0/1:342:173,169:173:6177:169:6030:-416.807,0,-452.613	0/1:36:14,22:14:491:22:784:-57.8278,0,-33.6716	0/1:7:3,4:3:108:4:144:-10.6744,0,-7.96796	0/0:163:162,1:162:5800:1:36:0,-45.6134,-517.696	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.9807	0/1:163:82,81:82:2932:81:2904:-199.001,0,-214.793	0/1:48:19,29:19:672:29:1023:-73.0146,0,-46.3574	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.489	0/1:83:48,35:48:1701:35:1235:-80.7173,0,-128.385	0/0:185:185,0:185:6608:0:0:0,-55.6905,-593.96	0/0:205:203,2:203:7226:2:72:0,-55.2063,-643.581	0/1:122:58,64:58:2067:64:2291:-159.168,0,-148.955	0/1:153:77,76:77:2744:76:2724:-186.638,0,-201.104	0/1:122:49,73:49:1741:73:2607:-186.354,0,-120.194	0/1:8:7,1:7:252:1:36:-1.01536,0,-20.6207	0/1:183:87,96:87:3116:96:3439:-240.49,0,-225.425	0/1:41:20,21:20:716:21:752:-52.3624,0,-52.3945	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6161	0/0:148:148,0:148:5280:0:0:0,-44.5524,-474.81	0/1:33:20,13:20:716:13:459:-29.8117,0,-54.8337	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:13:6,7:6:216:7:252:-17.9977,0,-15.8771	0/1:109:43,66:43:1535:66:2346:-169.916,0,-105.456	0/0:124:124,0:124:4412:0:0:0,-37.3277,-396.983	0/1:9:4,5:4:144:5:180:-13.0393,0,-10.6043	0/1:216:107,109:107:3844:109:3893:-268.367,0,-281.119	0/0:312:312,0:312:11155:0:0:0,-93.9214,-1003.32	0/1:127:60,67:60:2140:67:2383:-168.038,0,-154.38	0/0:72:71,1:71:2531:1:36:0,-18.2506,-223.66	0/1:181:103,78:103:3680:78:2758:-179.132,0,-276.623	0/0:162:161,1:161:5751:1:36:0,-45.3433,-513.283	0/1:12:9,3:9:309:3:108:-6.06021,0,-24.4552	0/1:92:43,49:43:1544:49:1748:-123.526,0,-111.515	0/0:113:113,0:113:4044:0:0:0,-34.0164,-363.898	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:145:145,0:145:5160:0:0:0,-43.6493,-464.2	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.793	0/0:190:190,0:190:6722:0:0:0,-57.1957,-603.892	0/0:134:134,0:134:4800:0:0:0,-40.338,-430.916	0/1:143:78,65:78:2788:65:2317:-159.074,0,-207.649	0/1:112:51,61:51:1812:61:2188:-156.369,0,-129.521	0/1:6:3,3:3:104:3:108:-7.93977,0,-7.89437	0/1:111:32,79:32:1144:79:2824:-208.542,0,-69.8307	0/1:101:60,41:60:2151:41:1468:-97.7822,0,-161.841	0/0:259:259,0:259:9229:0:0:0,-77.9668,-829.891	0/0:129:129,0:129:4612:0:0:0,-38.8329,-413.779	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.696	0/0:57:57,0:57:1991:0:0:0,-17.1587,-179.348	0/1:102:50,52:50:1779:52:1847:-126.724,0,-129.632	0/1:36:25,11:25:885:11:392:-22.9911,0,-69.0261	0/1:52:28,24:28:988:24:864:-58.5312,0,-73.4708	0/1:60:35,24:35:1252:24:860:-57.122,0,-94.7764	0/1:28:15,13:15:536:13:468:-32.3341,0,-40.1441	0/1:71:36,35:36:1280:35:1251:-86.2755,0,-93.9904	0/1:43:19,24:19:680:24:856:-60.5659,0,-48.5849	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.589	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.154
chr10	23513250	.	T	C	61713.7	PASS	AB=0.490736;ABP=4.49891;AC=134;AF=0.72043;AN=186;AO=2960;CIGAR=1X;DP=3996;DPB=3996;DPRA=14.4674;EPP=6369.91;EPPR=2215.87;GTI=1;LEN=1;MEANALT=1.01087;MQM=54.2361;MQMR=59.5275;NS=93;NUMALT=1;ODDS=0.923947;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105641;QR=37042;RO=1035;RPL=7;RPP=6369.91;RPPR=2215.87;RPR=2953;RUN=1;SAF=2960;SAP=6430.57;SAR=0;SRF=1035;SRP=2250.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:7,6:7:252:6:216:-15.8274,0,-19.1073	1/1:48:0,48:0:0:48:1689:-151.573,-14.4494,0	1/1:87:0,87:0:0:87:3101:-277.464,-26.1896,0	0/1:79:46,33:46:1648:33:1180:-82.5194,0,-124.454	0/1:32:21,11:21:756:11:396:-26.2988,0,-58.7296	0/1:23:12,11:12:428:11:392:-28.5488,0,-31.7438	0/1:54:31,23:31:1112:23:819:-57.6771,0,-84.0636	1/1:48:0,48:0:0:48:1719:-154.33,-14.4494,0	0/1:25:10,15:10:360:15:536:-40.6757,0,-25.1482	0/1:8:4,4:4:144:4:144:-10.8958,0,-10.9054	1/1:19:0,19:0:0:19:675:-61.0136,-5.71957,0	0/1:37:21,16:21:748:16:560:-39.3781,0,-56.5072	1/1:44:0,44:0:0:44:1580:-141.969,-13.2453,0	1/1:30:0,30:0:0:30:1072:-96.4668,-9.0309,0	1/1:26:0,26:0:0:26:927:-83.6876,-7.82678,0	0/1:29:14,15:14:504:15:532:-39.2016,0,-36.9682	1/1:32:0,32:0:0:32:1132:-101.724,-9.63296,0	1/1:27:1,26:1:36:26:936:-80.5722,-4.52954,0	0/1:22:9,13:9:324:13:468:-35.7302,0,-22.8832	0/1:75:38,37:38:1359:37:1328:-97.0491,0,-99.9463	0/1:53:28,25:28:996:25:892:-64.5318,0,-73.9461	1/1:60:0,60:0:0:60:2114:-189.817,-18.0618,0	0/1:31:12,19:12:432:19:676:-51.0852,0,-29.8893	1/1:41:1,40:1:36:40:1427:-124.447,-8.74396,0	0/1:31:7,24:7:252:24:864:-68.2602,0,-13.6924	1/1:125:1,124:1:32:124:4440:-396.162,-34.841,0	0/1:111:56,55:56:2008:55:1965:-143.37,0,-147.574	0/1:20:15,5:15:540:5:180:-10.5044,0,-42.9159	1/1:114:0,114:0:0:114:4069:-365.885,-34.3174,0	0/1:53:37,16:37:1316:16:571:-35.551,0,-102.783	1/1:67:0,67:0:0:67:2377:-213.85,-20.169,0	1/1:5:0,5:0:0:5:180:-16.5286,-1.50515,0	0/1:7:3,4:3:99:4:144:-11.1813,0,-7.11696	.:.:.:.:.:.:.:.	1/1:3:0,3:0:0:3:108:-9.86533,-0.90309,0	0/1:2:1,1:1:36:1:27:-2.09657,0,-2.99621	1/1:102:0,102:0:0:102:3626:-326.134,-30.7051,0	0/1:82:34,48:34:1194:48:1710:-129.279,0,-83.0768	0/1:41:23,18:23:828:18:644:-45.8058,0,-62.4761	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:42:1,41:1:36:41:1455:-127.44,-9.04499,0	1/1:30:0,30:0:0:30:1069:-96.1247,-9.0309,0	0/1:36:8,27:8:288:27:968:-76.2739,0,-15.5005	0/1:34:22,12:22:792:12:432:-28.9579,0,-61.366	1/1:30:0,30:0:0:30:1080:-97.443,-9.0309,0	0/1:41:22,19:22:773:19:684:-49.4754,0,-57.5473	1/1:65:0,65:0:0:65:2320:-208.269,-19.567,0	1/1:97:0,97:0:0:97:3455:-310.581,-29.1999,0	0/1:101:65,36:65:2320:36:1296:-86.4556,0,-178.614	0/1:52:24,28:24:860:28:1004:-74.9435,0,-62.0683	0/1:57:35,22:35:1241:22:780:-53.2353,0,-94.7583	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	0/1:50:20,30:20:716:30:1076:-81.8033,0,-49.7162	0/1:19:10,9:10:360:9:319:-23.2163,0,-27.0238	1/1:18:0,18:0:0:18:648:-58.5044,-5.41854,0	1/1:44:1,43:1:36:43:1540:-135.093,-9.64705,0	0/1:12:6,6:6:216:6:208:-15.4344,0,-16.1782	1/1:8:0,8:0:0:8:288:-25.9879,-2.40824,0	0/1:6:5,1:5:180:1:36:-1.79109,0,-14.745	0/1:20:12,8:12:424:8:288:-20.1688,0,-32.4758	1/1:57:0,57:0:0:57:2041:-183.733,-17.1587,0	0/1:9:6,3:6:216:3:108:-7.35863,0,-17.0766	0/1:97:34,63:34:1220:63:2266:-174.824,0,-80.8866	1/1:96:0,96:0:0:96:3400:-305.103,-28.8989,0	0/1:22:13,9:13:468:9:320:-22.4829,0,-35.837	1/1:33:0,33:0:0:33:1168:-105.29,-9.93399,0	0/1:51:24,27:24:864:27:963:-71.3595,0,-62.7254	1/1:50:0,50:0:0:50:1779:-158.582,-15.0515,0	1/1:5:0,5:0:0:5:180:-16.525,-1.50515,0	0/1:37:15,22:15:540:22:780:-58.8015,0,-37.7951	1/1:62:0,62:0:0:62:2224:-200.156,-18.6639,0	1/1:9:0,9:0:0:9:324:-29.4846,-2.70927,0	1/1:17:0,17:0:0:17:612:-55.1055,-5.11751,0	1/1:35:0,35:0:0:35:1247:-112.089,-10.5361,0	1/1:30:0,30:0:0:30:1080:-97.1148,-9.0309,0	1/1:62:0,62:0:0:62:2215:-199.145,-18.6639,0	0/1:63:16,47:16:564:47:1688:-132.701,0,-32.1221	0/1:60:35,25:35:1260:25:893:-62.0143,0,-95.611	0/0:12:11,1:11:396:1:36:0,-0.0231314,-32.3935	0/1:79:41,38:41:1476:38:1357:-98.3368,0,-109.333	0/1:63:22,41:22:788:41:1472:-113.441,0,-52.2602	1/1:122:0,122:0:0:122:4345:-390.207,-36.7257,0	1/1:47:0,47:0:0:47:1692:-152.235,-14.1484,0	1/1:17:0,17:0:0:17:603:-54.4659,-5.11751,0	1/1:35:0,35:0:0:35:1252:-112.727,-10.5361,0	0/1:76:42,34:42:1508:34:1220:-87.1379,0,-113.132	0/1:20:11,9:11:392:9:324:-23.4111,0,-29.5912	0/1:42:27,15:27:972:15:531:-35.3355,0,-75.1546	0/1:38:22,16:22:788:16:572:-40.248,0,-59.7893	0/1:18:10,8:10:360:8:288:-20.808,0,-27.3258	0/1:34:18,16:18:648:16:572:-41.4785,0,-48.4016	0/1:32:22,10:22:792:10:356:-22.6998,0,-61.9704	1/1:51:0,51:0:0:51:1800:-162.14,-15.3525,0	1/1:42:0,42:0:0:42:1499:-134.936,-12.6433,0
chr10	23539308	.	A	C	29513.9	PASS	AB=0.571289;ABP=138.617;AC=52;AF=0.285714;AN=182;AO=1763;CIGAR=1X;DP=5683;DPB=5683;DPRA=0.932656;EPP=3831.32;EPPR=8515.18;GTI=2;LEN=1;MEANALT=1;MQM=59.9648;MQMR=59.9878;NS=91;NUMALT=1;ODDS=0.790189;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61612;QR=140085;RO=3920;RPL=1763;RPP=3831.32;RPPR=8515.18;RPR=0;RUN=1;SAF=1763;SAP=3831.32;SAR=0;SRF=3920;SRP=8515.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:96:96,0:96:3427:0:0:0,-28.8989,-308.644	0/0:104:104,0:104:3740:0:0:0,-31.3071,-336.799	0/1:135:72,63:72:2588:63:2187:-156.452,0,-192.529	0/1:29:12,17:12:432:17:591:-44.7854,0,-30.4913	0/1:32:10,22:10:351:22:757:-58.8128,0,-22.2937	0/1:87:37,50:37:1324:50:1745:-131.073,0,-93.2725	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:62:23,39:23:824:39:1370:-104.933,0,-55.8195	0/1:93:54,39:54:1924:39:1382:-96.6806,0,-145.441	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:70:30,40:30:1076:40:1384:-103.782,0,-76.0808	0/0:35:35,0:35:1239:0:0:0,-10.536,-111.814	0/0:48:48,0:48:1694:0:0:0,-14.4494,-152.7	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/1:32:13,19:13:468:19:667:-50.7217,0,-32.8267	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/1:69:28,41:28:1008:41:1398:-105.337,0,-70.2653	0/1:55:21,34:21:735:34:1168:-88.8615,0,-49.9148	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:89:24,65:24:851:65:2246:-175.609,0,-50.1178	0/0:58:54,4:54:1940:4:144:0,-4.14612,-161.563	0/1:40:7,33:7:248:33:1184:-94.8271,0,-10.623	0/0:225:225,0:225:8064:0:0:0,-67.7317,-725.776	0/1:117:45,72:45:1604:72:2524:-192.186,0,-109.43	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/1:123:51,72:51:1832:72:2524:-190.377,0,-128.134	0/0:114:114,0:114:4072:0:0:0,-34.3174,-366.668	.:.:.:.:.:.:.:.	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:146:146,0:146:5256:0:0:0,-43.9504,-473.145	0/1:125:42,83:42:1500:83:2912:-224.688,0,-97.6658	0/1:40:22,18:22:788:18:628:-44.8043,0,-59.2036	.:.:.:.:.:.:.:.	0/0:80:79,1:79:2824:1:36:0,-20.4841,-250.801	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:63:18,45:18:644:45:1568:-122.443,0,-39.3257	0/1:49:24,25:24:860:25:883:-65.037,0,-62.9714	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:64:17,47:17:608:47:1671:-131.411,0,-35.7861	0/0:49:49,0:49:1746:0:0:0,-14.7505,-157.423	0/0:114:114,0:114:4068:0:0:0,-34.3174,-366.308	0/1:95:35,60:35:1241:60:2124:-162.828,0,-83.3947	0/1:119:63,56:63:2260:56:1983:-142.921,0,-167.84	0/1:76:41,35:41:1451:35:1228:-87.9428,0,-108.007	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:79:27,52:27:956:52:1829:-141.106,0,-62.5744	0/1:44:22,22:22:783:22:767:-56.1041,0,-57.5476	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:70:70,0:70:2478:0:0:0,-21.0721,-223.273	0/1:18:5,13:5:180:13:460:-36.3168,0,-11.1335	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:25:10,15:10:360:15:536:-41.0491,0,-25.2186	0/1:60:29,31:29:1020:31:1073:-78.8117,0,-74.0504	0/0:87:87,0:87:3101:0:0:0,-26.1896,-279.316	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:173:97,76:97:3460:76:2620:-183.967,0,-259.535	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/1:62:34,28:34:1211:28:996:-71.291,0,-90.6317	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/1:130:55,75:55:1955:75:2587:-193.942,0,-137.091	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/1:17:8,9:8:288:9:316:-23.6613,0,-21.1499	0/1:45:25,20:25:900:20:707:-50.4082,0,-67.7747	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:92:92,0:92:3269:0:0:0,-27.6948,-294.407	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/1:83:20,63:20:720:63:2195:-172.826,0,-40.1433	0/1:88:38,50:38:1343:50:1715:-128.136,0,-94.6787	0/1:10:7,3:7:239:3:108:-7.06487,0,-18.8324	0/1:66:29,37:29:1036:37:1311:-98.4229,0,-73.6859	0/1:74:25,49:25:892:49:1717:-132.537,0,-58.3235	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:114:43,71:43:1536:71:2456:-186.978,0,-104.216	0/1:27:16,11:16:576:11:368:-25.3133,0,-44.0472	0/1:53:24,29:24:864:29:1009:-75.1646,0,-62.128	0/1:40:20,20:20:720:20:689:-50.2835,0,-53.0876	0/1:26:14,12:14:500:12:423:-30.5783,0,-37.5094	0/1:82:36,46:36:1292:46:1626:-121.943,0,-91.8993	0/1:41:17,24:17:608:24:840:-63.576,0,-42.7098	0/0:89:89,0:89:3155:0:0:0,-26.7917,-284.174	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378
chr10	23539391	.	A	T	27257.4	PASS	AB=0.591295;ABP=199.272;AC=52;AF=0.285714;AN=182;AO=1612;CIGAR=1X;DP=4827;DPB=4827;DPRA=1.11183;EPP=3425.69;EPPR=6781.49;GTI=3;LEN=1;MEANALT=1.03571;MQM=43.0558;MQMR=56.9994;NS=91;NUMALT=1;ODDS=0.377303;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57591;QR=114968;RO=3209;RPL=1603;RPP=3425.69;RPPR=6781.49;RPR=9;RUN=1;SAF=0;SAP=3503.42;SAR=1612;SRF=0;SRP=6971.27;SRR=3209;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:9,9:9:324:9:324:-22.4448,0,-24.0512	0/0:42:42,0:42:1504:0:0:0,-12.6433,-134.75	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.583	0/1:138:77,61:77:2756:61:2196:-153.165,0,-205.789	0/1:54:13,41:13:464:41:1472:-113.128,0,-25.8226	0/1:23:11,12:11:392:12:413:-29.4561,0,-28.4683	0/1:53:21,32:21:737:32:1152:-86.4147,0,-50.6847	0/0:74:72,2:72:2588:2:72:0,-15.6629,-225.915	0/1:58:18,40:18:644:40:1421:-106.541,0,-40.5951	0/1:64:30,34:30:1072:34:1224:-86.668,0,-76.8895	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5813	0/1:66:30,36:30:1080:36:1296:-92.5825,0,-77.4003	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.551	0/0:25:25,0:25:900:0:0:0,-7.52575,-80.8231	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.414	0/1:19:10,9:10:360:9:324:-23.1527,0,-25.5511	0/0:18:18,0:18:644:0:0:0,-5.41854,-57.726	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9313	0/1:8:2,6:2:72:6:216:-16.7356,0,-3.97406	0/1:120:43,77:43:1544:77:2737:-205.07,0,-102.984	0/1:80:43,37:43:1544:37:1316:-90.831,0,-114.924	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.3938	0/1:66:18,48:18:648:48:1728:-130.509,0,-38.7755	0/1:16:14,2:14:504:2:72:-1.87344,0,-40.8599	0/1:58:11,47:11:377:47:1677:-129.741,0,-16.7146	0/0:108:108,0:108:3873:0:0:0,-32.5112,-348.463	0/1:136:67,68:67:2397:68:2444:-174.034,0,-174.852	0/1:13:6,7:6:216:7:252:-18.6211,0,-15.8585	0/0:97:97,0:97:3488:0:0:0,-29.1999,-313.937	0/1:76:31,45:31:1116:45:1602:-116.557,0,-77.8219	0/0:65:65,0:65:2332:0:0:0,-19.5669,-209.174	.:.:.:.:.:.:.:.	0/1:4:3,1:3:108:1:36:-2.31689,0,-8.21871	.:.:.:.:.:.:.:.	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9329	0/1:4:2,2:2:68:2:72:-5.4092,0,-5.24866	0/0:112:110,0:110:3960:0:0:0,-33.1133,-355.788	0/1:109:35,74:35:1260:74:2630:-197.824,0,-80.7813	0/1:29:11,18:11:396:18:648:-47.9538,0,-27.0592	0/1:6:1,5:1:36:5:165:-13.0806,0,-1.79038	0/0:76:76,0:76:2732:0:0:0,-22.8783,-245.64	0/0:17:15,0:15:540:0:0:0,-4.51545,-48.5333	0/1:67:17,50:17:608:50:1770:-132.754,0,-34.8579	0/1:46:26,20:26:912:20:712:-49.2462,0,-68.5257	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.3708	0/1:102:32,70:32:1152:70:2512:-189.908,0,-73.2811	0/0:36:35,1:35:1252:1:21:0,-8.81551,-110.816	0/0:108:107,1:107:3836:1:36:0,-28.9627,-341.645	0/1:51:18,33:18:644:33:1180:-89.0414,0,-42.8633	0/1:67:36,31:36:1277:31:1116:-78.7387,0,-94.8672	0/1:120:49,71:49:1764:71:2548:-191.108,0,-122.762	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83588	0/1:80:22,58:22:792:58:2069:-155.634,0,-47.4467	0/1:40:9,31:9:324:31:1104:-86.0985,0,-17.4647	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4755	0/0:81:81,0:81:2903:0:0:0,-24.3834,-261.152	0/1:15:5,10:5:180:10:360:-27.776,0,-12.0346	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:5:1,4:1:36:4:140:-11.3403,0,-2.09312	0/1:59:13,46:13:468:46:1648:-126.669,0,-23.9712	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.659	.:.:.:.:.:.:.:.	0/1:126:74,52:74:2649:52:1857:-127.997,0,-199.389	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.003	0/1:56:24,32:24:845:32:1133:-81.7858,0,-59.4442	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.408	0/1:68:11,57:11:396:57:2033:-158.602,0,-15.5083	0/0:100:96,3:96:3452:3:108:0,-20.221,-299.099	0/1:13:8,5:8:288:5:154:-9.95628,0,-22.3397	0/1:39:11,28:11:396:28:1008:-76.2698,0,-24.2055	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.82	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7402	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.202	0/0:60:59,1:59:2101:1:36:0,-14.5811,-185.552	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.15	0/0:97:97,0:97:3479:0:0:0,-29.1999,-313.27	0/1:36:8,28:8:288:28:970:-71.616,0,-15.2994	0/1:57:29,28:29:1029:28:1004:-69.7943,0,-75.4514	1/1:1:0,1:0:0:1:36:-3.4807,-0.30103,0	0/1:65:31,34:31:1112:34:1220:-86.7637,0,-80.7738	0/1:43:18,25:18:640:25:892:-64.0931,0,-44.9262	0/0:141:141,0:141:5037:0:0:0,-42.4452,-452.417	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.235	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.2561	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.4641	0/1:104:44,60:44:1580:60:2160:-160.132,0,-111.167	0/1:14:11,3:11:396:3:108:-5.53153,0,-31.6277	0/1:44:16,28:16:572:28:1008:-74.0594,0,-38.4746	0/1:42:21,21:21:756:21:752:-52.6395,0,-55.6392	0/1:17:6,11:6:216:11:396:-30.0559,0,-14.6544	0/1:75:45,30:45:1608:30:1075:-69.4511,0,-122.213	0/1:42:16,26:16:567:26:936:-70.7468,0,-38.7114	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.274	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.441
chr10	24098493	.	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chr10	24098499	.	T	C	35570.3	PASS	AB=0.486677;ABP=9.77989;AC=54;AF=0.287234;AN=188;AO=2163;CIGAR=1X;DP=8545;DPB=8545;DPRA=0.947331;EPP=4699.91;EPPR=13848.3;GTI=2;LEN=1;MEANALT=1.03279;MQM=59.5959;MQMR=59.9629;NS=94;NUMALT=1;ODDS=2.18187;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77255;QR=228472;RO=6380;RPL=2163;RPP=4699.91;RPPR=13857;RPR=0;RUN=1;SAF=0;SAP=4699.91;SAR=2163;SRF=1;SRP=13848.3;SRR=6379;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:23,20:23:828:20:716:-51.8234,0,-61.8916	0/0:154:151,3:151:5405:3:108:0,-36.3299,-476.528	0/0:104:104,0:104:3676:0:0:0,-31.3071,-331.04	0/1:202:106,96:106:3796:96:3414:-246.64,0,-281.03	0/1:78:43,35:43:1548:35:1241:-88.5043,0,-116.133	0/1:62:34,28:34:1224:28:993:-71.0088,0,-91.8032	0/1:183:104,79:104:3721:79:2827:-199.564,0,-279.999	0/0:163:163,0:163:5829:0:0:0,-49.0679,-524.721	0/1:78:40,38:40:1409:38:1368:-99.9065,0,-103.625	0/1:102:45,57:45:1620:57:2006:-149.994,0,-115.385	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:85:51,34:51:1836:34:1212:-83.7955,0,-139.933	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.23	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:52:30,22:30:1065:22:792:-55.9521,0,-80.5062	0/0:55:55,0:55:1949:0:0:0,-16.5566,-175.684	0/0:39:38,1:38:1364:1:36:0,-8.14189,-119.462	0/1:46:24,22:24:833:22:792:-57.7583,0,-61.4375	0/1:295:159,136:159:5716:136:4861:-348.824,0,-425.731	0/1:202:84,118:84:3020:118:4206:-317.778,0,-211.222	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:57:37,20:37:1328:20:705:-46.5941,0,-102.664	0/0:139:130,9:130:4642:9:324:0,-12.342,-388.439	0/1:68:38,30:38:1368:30:1080:-77.0417,0,-102.951	0/0:276:276,0:276:9843:0:0:0,-83.0843,-885.813	0/1:183:78,105:78:2759:105:3764:-283.65,0,-193.458	0/1:34:15,19:15:540:19:680:-51.2941,0,-38.7015	0/0:204:204,0:204:7298:0:0:0,-61.4101,-656.867	0/1:70:47,23:47:1684:23:828:-53.772,0,-130.775	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:16:10,6:10:360:6:201:-13.5957,0,-27.9278	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:244:244,0:244:8756:0:0:0,-73.4513,-788.024	0/1:131:57,74:57:2007:74:2644:-198.766,0,-141.458	0/1:56:29,27:29:1044:27:968:-70.5552,0,-77.4171	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/0:148:144,4:144:5176:4:144:0,-31.2388,-452.664	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:139:72,67:72:2584:67:2400:-174.371,0,-190.966	0/1:100:48,52:48:1724:52:1872:-138.649,0,-125.342	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.183	0/1:95:51,44:51:1832:44:1576:-113.531,0,-136.563	0/0:86:85,1:85:3029:1:36:0,-22.2903,-269.241	0/0:143:143,0:143:5102:0:0:0,-43.0473,-459.321	0/1:104:51,53:51:1824:53:1904:-140.328,0,-133.132	0/1:96:39,57:39:1396:57:2048:-155.679,0,-97.0402	0/1:217:125,92:125:4492:92:3300:-231.873,0,-339.123	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:148:96,51:96:3437:51:1817:-119.166,0,-264.93	0/1:38:22,16:22:788:16:576:-40.7358,0,-59.8057	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:129:129,0:129:4636:0:0:0,-38.8329,-417.401	0/1:41:25,16:25:896:16:560:-38.3796,0,-68.6181	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:63:39,24:39:1381:24:860:-58.6172,0,-105.622	0/0:95:94,1:94:3361:1:36:0,-24.9996,-299.107	0/1:8:3,5:3:108:5:176:-13.7768,0,-7.66693	0/1:129:54,75:54:1940:75:2662:-200.985,0,-136.043	0/0:154:153,1:153:5496:1:36:0,-42.7603,-491.166	0/1:50:22,28:22:788:28:989:-74.2659,0,-56.1933	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:175:86,89:86:3088:89:3147:-230.748,0,-225.462	0/0:126:126,0:126:4490:0:0:0,-37.9298,-404.252	0/1:25:15,10:15:540:10:360:-25.2186,0,-41.4108	0/1:60:35,25:35:1260:25:900:-63.2183,0,-95.6437	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:67:67,0:67:2397:0:0:0,-20.169,-215.971	0/0:80:79,1:79:2840:1:36:0,-20.4841,-252.049	0/0:183:183,0:183:6572:0:0:0,-55.0885,-591.545	0/0:149:148,1:148:5320:1:36:0,-41.2552,-475.176	0/1:94:51,42:51:1821:42:1512:-107.622,0,-135.814	0/1:79:27,52:27:972:52:1860:-143.887,0,-64.0165	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7094	0/1:107:41,66:41:1461:66:2360:-180.448,0,-99.5692	0/1:84:42,42:42:1493:42:1504:-110.368,0,-109.376	0/0:304:304,0:304:10894:0:0:0,-91.5131,-980.319	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.012	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.685	0/1:138:79,59:79:2828:59:2093:-146.917,0,-213.214	0/1:40:21,19:21:756:19:684:-49.8409,0,-56.326	0/1:75:39,36:39:1400:36:1288:-93.6055,0,-103.722	0/1:57:25,32:25:900:32:1148:-86.385,0,-64.1623	0/1:27:17,10:17:612:10:356:-24.2534,0,-47.2856	0/1:47:26,21:26:936:21:756:-54.2142,0,-70.4064	0/1:74:25,49:25:896:49:1752:-135.679,0,-58.6841	0/0:80:80,0:80:2857:0:0:0,-24.0824,-257.366	0/0:109:109,0:109:3905:0:0:0,-32.8123,-351.641
chr10	24170312	.	TGACT	CGACC,TGACC	103566	PASS	AB=0.520252,0.473457;ABP=12.0693,18.5727;AC=137,51;AF=0.728723,0.271277;AN=188;AO=3772,1211;CIGAR=1X3M1X,4M1X;DP=5013;DPB=5013;DPRA=0,1.01465;EPP=8193.8,2632.66;EPPR=5.18177;GTI=1;LEN=5,1;MEANALT=1.90426,2.28571;MQM=59.9825,60;MQMR=60;NS=94;NUMALT=2;ODDS=2.1058;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=131461,42967;QR=36;RO=1;RPL=0,0;RPP=8193.8,2632.66;RPPR=5.18177;RPR=3772,1211;RUN=1,1;SAF=0,0;SAP=8193.8,2632.66;SAR=3772,1211;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:9:0,6,3:0:0:6,3:216,108:-26.7966,-9.17208,-7.3659,-17.9843,0,-17.0812	1/1:72:0,71,0:0:0:71,0:2468,0:-222.015,-21.3731,0,-222.015,-21.3731,-222.015	1/1:48:0,48,0:0:0:48,0:1675,0:-151.035,-14.4494,0,-151.035,-14.4494,-151.035	1/2:79:0,44,35:0:0:44,35:1539,1237:-226.301,-101.096,-87.8509,-125.556,0,-115.02	1/2:50:0,20,30:0:0:20,30:701,1072:-144.801,-87.7616,-81.741,-57.3926,0,-48.3617	1/2:40:0,19,21:0:0:19,21:645,738:-112.721,-60.4198,-54.7002,-52.6467,0,-46.3251	1/2:35:0,24,10:0:0:24,10:805,360:-94.691,-29.5013,-22.2766,-65.3085,0,-62.2982	1/1:61:0,61,0:0:0:61,0:2143,0:-193.137,-18.3628,0,-193.137,-18.3628,-193.137	1/2:74:0,42,32:0:0:42,32:1481,1144:-214.222,-93.6366,-80.9933,-120.94,0,-111.307	1/2:37:0,14,23:0:0:14,23:481,811:-105.44,-66.3863,-62.1719,-39.4008,0,-32.4771	1/1:27:0,27,0:0:0:27,0:922,0:-83.2875,-8.12781,0,-83.2875,-8.12781,-83.2875	1/2:59:0,33,25:0:0:33,25:1155,854:-163.264,-69.287,-59.353,-93.9632,0,-86.4375	1/1:36:0,36,0:0:0:36,0:1224,0:-110.457,-10.8371,0,-110.457,-10.8371,-110.457	1/1:38:0,38,0:0:0:38,0:1312,0:-118.377,-11.4391,0,-118.377,-11.4391,-118.377	1/1:30:0,30,0:0:0:30,0:1047,0:-94.5389,-9.0309,0,-94.5389,-9.0309,-94.5389	1/2:18:0,6,12:0:0:6,12:192,424:-50.3418,-34.8841,-33.0779,-15.7887,0,-12.1764	1/1:39:0,38,1:0:0:38,1:1330,36:-119.639,-11.4391,0,-116.701,-8.1419,-116.4	1/1:30:0,30,0:0:0:30,0:1027,0:-92.7355,-9.0309,0,-92.7355,-9.0309,-92.7355	1/2:18:0,9,9:0:0:9,9:306,311:-50.4129,-25.6145,-22.9052,-25.141,0,-22.4317	1/2:157:0,85,70:0:0:85,70:2958,2487:-443.199,-202.681,-177.093,-240.54,0,-219.467	1/2:78:0,41,37:0:0:41,37:1404,1308:-220.843,-106.881,-94.5389,-114.31,0,-103.172	1/1:89:0,89,0:0:0:89,0:3063,0:-275.9,-26.7917,0,-275.9,-26.7917,-275.9	1/2:24:0,10,14:0:0:10,14:353,500:-69.8654,-41.1218,-38.1115,-29.0983,0,-24.8838	1/1:45:0,44,1:0:0:44,1:1560,36:-140.331,-13.2453,0,-137.394,-9.94808,-137.093	1/2:53:0,21,32:0:0:21,32:713,1148:-151.813,-93.9969,-87.6752,-58.1628,0,-48.5299	1/1:204:0,200,3:0:0:200,3:6974,108:-627.048,-60.206,0,-618.236,-51.2889,-617.332	1/2:113:0,45,68:0:0:45,68:1577,2440:-327.705,-199.385,-185.839,-128.674,0,-108.204	1/2:19:0,10,9:0:0:10,9:351,312:-54.275,-25.7061,-22.6958,-28.9175,0,-26.2083	1/1:227:0,226,0:0:0:226,0:7919,0:-712.493,-68.0328,0,-712.493,-68.0328,-712.493	1/2:51:0,33,18:0:0:33,18:1117,644:-143.418,-52.8721,-42.9381,-90.8965,0,-85.478	1/1:49:0,48,0:0:0:48,0:1685,0:-151.576,-14.4494,0,-151.576,-14.4494,-151.576	1/1:14:0,14,0:0:0:14,0:499,0:-45.2458,-4.21442,0,-45.2458,-4.21442,-45.2458	1/2:9:0,6,3:0:0:6,3:205,108:-25.7961,-9.17208,-7.3659,-16.9777,0,-16.0747	1/1:3:0,3,0:0:0:3,0:101,0:-9.42313,-0.90309,0,-9.42313,-0.90309,-9.42313	1/1:11:0,11,0:0:0:11,0:379,0:-34.4417,-3.31133,0,-34.4417,-3.31133,-34.4417	1/2:7:0,4,3:0:0:4,3:142,108:-20.7395,-9.17208,-7.96796,-11.9252,0,-11.0221	1/1:119:0,119,0:0:0:119,0:4152,0:-373.869,-35.8226,0,-373.869,-35.8226,-373.869	1/2:155:0,78,77:0:0:78,77:2746,2752:-448.292,-224.743,-201.263,-223.904,0,-200.724	1/2:25:0,13,12:0:0:13,12:464,417:-72.0803,-34.2479,-30.3345,-38.1843,0,-34.5719	1/2:4:0,1,1:0:0:1,1:26,36:-4.95127,-2.93742,-2.63639,-2.00553,0,-1.7045	1/1:55:0,54,0:0:0:54,0:1895,0:-170.478,-16.2556,0,-170.478,-16.2556,-170.478	1/1:26:0,26,0:0:0:26,0:905,0:-81.7647,-7.82678,0,-81.7647,-7.82678,-81.7647	1/2:89:0,45,43:0:0:45,43:1560,1540:-252.379,-125.589,-112.043,-126.783,0,-113.838	1/2:25:0,11,14:0:0:11,14:391,485:-71.6296,-39.7626,-36.4512,-32.2184,0,-28.004	1/1:44:0,44,0:0:0:44,0:1527,0:-137.72,-13.2453,0,-137.72,-13.2453,-137.72	1/2:12:0,8,4:0:0:8,4:282,144:-35.0656,-12.1095,-9.70126,-23.3134,0,-22.1093	1/1:80:0,80,0:0:0:80,0:2817,0:-253.771,-24.0824,0,-253.771,-24.0824,-253.771	1/1:95:0,94,1:0:0:94,1:3290,36:-295.963,-28.2968,0,-293.025,-24.9996,-292.724	1/2:90:0,44,46:0:0:44,46:1555,1647:-261.312,-134.671,-121.426,-126.997,0,-113.149	1/2:57:0,27,29:0:0:27,29:949,1040:-162.066,-84.8247,-76.6969,-77.2364,0,-68.5066	1/2:89:0,44,44:0:0:44,44:1516,1559:-250.238,-127.103,-113.858,-123.231,0,-109.985	1/2:13:0,7,6:0:0:7,6:232,216:-36.7337,-17.9843,-15.8771,-19.096,0,-17.2898	1/2:71:0,42,29:0:0:42,29:1481,1040:-205.769,-85.1845,-72.5412,-120.941,0,-112.211	1/2:10:0,6,4:0:0:6,4:207,144:-28.9168,-12.1095,-10.3033,-17.1612,0,-15.9571	1/1:6:0,6,0:0:0:6,0:205,0:-18.7844,-1.80618,0,-18.7844,-1.80618,-18.7844	1/1:82:0,80,0:0:0:80,0:2818,0:-253.511,-24.0824,0,-253.511,-24.0824,-253.511	1/2:28:0,12,16:0:0:12,16:424,568:-81.1657,-46.6354,-43.023,-34.8842,0,-30.0677	1/1:5:0,5,0:0:0:5,0:177,0: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chr10	24473140	.	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chr10	24643437	.	A	T	74276.9	PASS	AB=0.482373;ABP=9.28759;AC=133;AF=0.715054;AN=186;AO=3565;CIGAR=1X;DP=4783;DPB=4783;DPRA=35.0183;EPP=7744.31;EPPR=2639.18;GTI=0;LEN=1;MEANALT=1.04396;MQM=59.9773;MQMR=59.9695;NS=93;NUMALT=1;ODDS=0.427775;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=127069;QR=43468;RO=1214;RPL=3565;RPP=7744.31;RPPR=2639.18;RPR=0;RUN=1;SAF=3565;SAP=7744.31;SAR=0;SRF=1214;SRP=2639.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	0/1:70:55,15:55:1972:15:536:-27.5027,0,-156.683	0/1:71:39,32:39:1400:32:1152:-82.617,0,-104.926	0/1:40:20,20:20:716:20:716:-52.7265,0,-52.7265	0/1:64:42,22:42:1504:22:779:-51.1661,0,-116.389	1/1:59:0,59:0:0:59:2084:-187.828,-17.7608,0	0/1:53:26,27:26:913:27:960:-70.7617,0,-66.5294	0/1:47:30,17:30:1076:17:594:-39.6384,0,-83.0044	1/1:46:0,46:0:0:46:1630:-146.987,-13.8474,0	0/1:33:17,16:17:608:16:572:-41.8794,0,-45.118	1/1:52:0,52:0:0:52:1843:-166.148,-15.6536,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:23:12,10:12:432:10:356:-25.3991,0,-32.2387	1/1:45:0,45:0:0:45:1614:-145.55,-13.5464,0	1/1:41:0,41:0:0:41:1443:-130.163,-12.3422,0	0/1:28:12,16:12:432:16:568:-43.023,0,-30.7924	0/1:61:18,42:18:648:42:1489:-115.881,0,-40.2303	0/1:74:25,49:25:900:49:1756:-136.048,0,-59.0448	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	1/1:47:3,43:3:108:43:1529:-127.826,-4.13204,0	0/1:43:19,24:19:661:24:839:-62.8778,0,-46.8673	1/1:148:0,148:0:0:148:5272:-474.617,-44.5524,0	0/1:118:69,49:69:2469:49:1732:-120.64,0,-186.94	0/1:30:17,13:17:612:13:451:-31.8889,0,-46.3825	1/1:134:0,134:0:0:134:4776:-429.996,-40.338,0	0/1:57:25,32:25:896:32:1137:-85.4783,0,-63.8016	1/1:63:0,63:0:0:63:2248:-202.583,-18.9649,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:156:0,156:0:0:156:5561:-500.616,-46.9607,0	0/1:108:44,64:44:1580:64:2285:-173.4,0,-109.98	0/1:57:25,32:25:892:32:1139:-85.6597,0,-63.441	.:.:.:.:.:.:.:.	1/1:65:5,60:5:161:60:2144:-178.289,-4.76039,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:44:28,16:28:1008:16:572:-38.5681,0,-77.791	0/1:42:25,17:25:896:17:612:-42.7702,0,-68.3171	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:57:32,25:32:1152:25:893:-63.531,0,-86.6737	1/1:53:1,52:1:36:52:1834:-161.74,-12.3563,0	1/1:88:0,88:0:0:88:3128:-281.687,-26.4906,0	0/1:74:41,33:41:1457:33:1179:-84.141,0,-109.148	0/1:47:25,22:25:900:22:792:-57.4573,0,-67.1726	0/1:28:16,12:16:557:12:432:-30.7924,0,-42.0267	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:77:30,47:30:1076:47:1680:-128.308,0,-73.9735	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:11:0,11:0:0:11:385:-34.9842,-3.31133,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:15:12,3:12:428:3:108:-5.55972,0,-34.3434	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:36:16,20:16:576:20:720:-54.2917,0,-41.3379	1/1:111:0,111:0:0:111:3956:-356.23,-33.4143,0	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/1:91:53,38:53:1904:38:1350:-94.4051,0,-144.244	1/1:96:0,96:0:0:96:3435:-309.363,-28.8989,0	0/1:46:21,25:21:756:25:873:-65.0372,0,-54.5198	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:85:30,55:30:1080:55:1957:-150.816,0,-71.9257	1/1:51:0,51:0:0:51:1813:-163.45,-15.3525,0	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	1/1:77:0,77:0:0:77:2725:-245.492,-23.1793,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:59:0,59:0:0:59:2111:-190.258,-17.7608,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:116:0,116:0:0:116:4145:-373.232,-34.9195,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:38:24,14:24:864:14:504:-34.259,0,-66.6434	0/1:49:22,27:22:792:27:961:-72.0548,0,-56.8552	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:90:45,45:45:1612:45:1607:-117.827,0,-118.277	0/1:34:18,16:18:644:16:566:-41.0358,0,-48.0523	1/1:158:1,157:1:21:157:5624:-504.181,-45.4628,0	1/1:74:0,74:0:0:74:2631:-237.037,-22.2762,0	1/1:32:0,32:0:0:32:1124:-101.465,-9.63296,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:84:45,39:45:1620:39:1380:-99.2095,0,-120.803	0/1:36:21,15:21:756:15:536:-37.7377,0,-57.5301	0/1:40:18,22:18:644:22:792:-59.5645,0,-46.2412	0/1:48:22,26:22:792:26:915:-68.2161,0,-57.1562	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	0/1:96:57,38:57:2048:38:1348:-92.6627,0,-155.634	0/1:42:28,14:28:1004:14:504:-33.0548,0,-78.0326	1/1:38:0,38:0:0:38:1338:-120.716,-11.4391,0	1/1:75:0,75:0:0:75:2671:-240.636,-22.5773,0
chr10	24831754	.	A	G	130576	PASS	AB=0.594387;ABP=295.282;AC=136;AF=0.723404;AN=188;AO=6186;CIGAR=1X;DP=7728;DPB=7728;DPRA=0;EPP=13435.7;EPPR=3288.72;GTI=5;LEN=1;MEANALT=1.01064;MQM=59.6172;MQMR=42.599;NS=94;NUMALT=1;ODDS=1.46229;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221078;QR=55214;RO=1541;RPL=0;RPP=13435.7;RPPR=3288.72;RPR=6186;RUN=1;SAF=6186;SAP=13435.7;SAR=0;SRF=1541;SRP=3349.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:13,54:13:468:54:1924:-153.268,0,-20.5333	1/1:48:1,47:1:36:47:1669:-147.041,-10.9949,0	1/1:174:0,174:0:0:174:6225:-560.345,-52.3792,0	0/1:238:108,130:108:3865:130:4627:-344.857,0,-270.169	0/1:44:9,35:9:324:35:1256:-100.044,0,-14.9573	0/1:22:7,15:7:252:15:532:-41.5904,0,-15.4249	0/1:38:16,22:16:576:22:784:-59.4448,0,-39.8044	1/1:118:2,116:2:72:116:4144:-366.578,-28.958,0	0/1:121:38,83:38:1349:83:2980:-232.007,0,-80.5666	0/1:35:12,23:12:432:23:809:-62.5913,0,-27.6591	1/1:31:0,31:0:0:31:1093:-98.6661,-9.33193,0	0/1:84:33,51:33:1188:51:1802:-137.171,0,-77.8307	1/1:69:0,69:0:0:69:2461:-221.743,-20.7711,0	1/1:35:0,35:0:0:35:1233:-111.216,-10.5361,0	1/1:70:0,69:0:0:69:2476:-222.637,-20.7711,0	0/1:36:14,22:14:504:22:788:-60.4077,0,-32.3611	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:17:5,12:5:165:12:432:-34.1037,0,-8.93932	0/1:183:95,88:95:3420:88:3145:-228.156,0,-244.888	0/1:113:59,54:59:2108:54:1917:-138.733,0,-149.395	1/1:223:0,223:0:0:223:7973:-717.025,-67.1297,0	0/1:111:46,65:46:1648:65:2291:-172.89,0,-111.993	1/1:78:1,77:1:36:77:2764:-244.935,-19.9776,0	0/1:71:19,52:19:684:52:1853:-145.675,0,-38.8733	1/1:278:0,278:0:0:278:9939:-894.313,-83.6863,0	0/1:187:79,108:79:2821:108:3841:-289.479,0,-190.342	0/1:27:14,13:14:504:13:468:-34.3318,0,-36.3565	1/1:252:0,252:0:0:252:9002:-809.85,-75.8596,0	0/1:130:39,91:39:1361:91:3276:-255.757,0,-80.1046	1/1:88:0,88:0:0:88:3160:-284.596,-26.4906,0	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	0/1:21:3,18:3:108:18:644:-51.969,0,-3.48593	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:22:11,11:11:396:11:396:-29.3601,0,-27.9222	1/1:184:0,184:0:0:184:6599:-593.814,-55.3895,0	0/1:111:40,71:40:1440:71:2548:-196.156,0,-92.5185	0/1:36:11,25:11:396:25:900:-70.4839,0,-23.5254	0/1:6:1,5:1:36:5:180:-13.9419,0,-1.69652	1/1:114:2,112:2:72:112:4020:-355.272,-27.6623,0	1/1:28:0,28:0:0:28:1008:-90.924,-8.42884,0	0/1:200:75,125:75:2670:125:4484:-343.242,0,-171.185	0/1:33:10,23:10:356:23:828:-64.9101,0,-21.9147	1/1:37:0,37:0:0:37:1332:-120.169,-11.1381,0	0/1:124:41,83:41:1472:83:2953:-228.606,0,-93.9819	1/1:162:0,162:0:0:162:5790:-521.211,-48.7669,0	1/1:133:0,133:0:0:133:4746:-427.112,-40.037,0	0/1:55:20,35:20:720:35:1241:-95.1355,0,-47.0134	0/1:89:37,52:37:1328:52:1855:-140.397,0,-90.6216	0/1:141:46,95:46:1656:95:3392:-263.048,0,-105.237	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.09496	0/1:124:52,72:52:1872:72:2584:-195.459,0,-121.347	0/1:16:6,10:6:216:10:360:-27.9101,0,-14.7559	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:103:0,103:0:0:103:3646:-328.145,-31.0061,0	0/1:28:15,13:15:540:13:464:-33.6687,0,-39.6321	1/1:10:0,10:0:0:10:356:-32.3635,-3.0103,0	0/1:13:7,6:7:252:6:193:-13.7716,0,-17.8442	0/1:51:19,32:19:684:32:1144:-87.917,0,-44.4214	1/1:87:0,87:0:0:87:3117:-280.085,-26.1896,0	0/1:10:2,8:2:72:8:288:-23.2284,0,-2.39126	0/1:172:103,69:103:3689:69:2484:-172.036,0,-276.717	1/1:127:0,127:0:0:127:4564:-410.839,-38.2308,0	0/1:70:24,46:24:864:46:1652:-127.55,0,-54.7452	1/1:110:1,109:1:32:109:3871:-345.38,-29.9399,0	0/1:173:51,122:51:1821:122:4350:-339.51,0,-108.762	1/1:91:0,91:0:0:91:3264:-293.923,-27.3937,0	0/1:27:15,12:15:517:12:432:-31.0483,0,-37.6101	0/1:28:15,13:15:540:13:448:-32.2182,0,-38.4916	1/1:43:0,43:0:0:43:1548:-139.595,-12.9443,0	1/1:22:0,22:0:0:22:788:-71.2163,-6.62266,0	1/1:148:0,148:0:0:148:5290:-476.232,-44.5524,0	1/1:94:0,94:0:0:94:3357:-302.345,-28.2968,0	1/1:182:0,182:0:0:182:6489:-583.782,-54.7875,0	1/1:171:0,171:0:0:171:6129:-551.573,-51.4761,0	0/1:64:13,51:13:468:51:1806:-143.552,0,-21.1976	0/1:110:47,63:47:1692:63:2240:-168.748,0,-112.474	0/1:15:7,8:7:252:8:288:-21.752,0,-17.5933	0/1:72:37,35:37:1328:35:1256:-91.5814,0,-94.7671	0/1:60:28,32:28:1008:32:1139:-84.7566,0,-68.1497	1/1:184:0,184:0:0:184:6601:-594.11,-55.3895,0	1/1:49:0,49:0:0:49:1726:-155.563,-14.7505,0	1/1:58:0,58:0:0:58:2080:-187.385,-17.4597,0	1/1:50:0,50:0:0:50:1800:-162.254,-15.0515,0	0/1:85:45,40:45:1612:40:1440:-104.226,0,-115.127	0/1:9:6,3:6:216:3:108:-7.3659,0,-16.4222	0/1:57:24,33:24:864:33:1184:-89.7096,0,-57.7868	0/1:58:26,32:26:936:32:1152:-86.5304,0,-63.8943	0/1:15:7,8:7:252:8:288:-20.9653,0,-17.9018	0/1:87:39,48:39:1404:48:1713:-128.096,0,-96.7251	0/1:65:40,25:40:1440:25:900:-61.7541,0,-107.581	1/1:152:0,152:0:0:152:5437:-488.742,-45.7566,0	1/1:74:2,72:2:72:72:2569:-224.715,-15.5893,0
chr10	24831762	.	TCG	TCC,TCCG	156435	PASS	AB=0.603414,0.392667;ABP=334.913,360.54;AC=136,52;AF=0.723404,0.276596;AN=188;AO=6007,1412;CIGAR=2M1X,1M1I2M;DP=7444;DPB=7916.67;DPRA=0,0.848481;EPP=13047,2830.75;EPPR=3.0103;GTI=6;LEN=1,1;MEANALT=1.87234,2.25424;MQM=59.6496,42.6629;MQMR=50;NS=94;NUMALT=2;ODDS=0.26168;PAIRED=0,0;PAIREDR=0;PAO=1,0;PQA=32,0;PQR=0;PRO=0;QA=212245,49389;QR=70;RO=2;RPL=0,1384;RPP=13047,2830.75;RPPR=3.0103;RPR=6007,28;RUN=1,1;SAF=6007,1412;SAP=13047,3069.13;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,ins	GT:DP:AD:RO:QR:AO:QA:GL	1/2:65:0,54,11:0:0:54,11:1928,396:-188.367,-31.1728,-14.9171,-157.541,0,-154.23	1/1:46:0,45,1:0:0:45,1:1612,36:-145.024,-13.5464,0,-142.217,-10.3929,-141.916	1/1:169:0,169,0:0:0:169,0:5965,0:-536.966,-50.8741,0,-536.966,-50.8741,-536.966	1/2:227:0,125,101:0:0:125,101:4407,3533:-641.104,-282.314,-244.686,-358.781,0,-328.377	1/2:41:0,33,8:0:0:33,8:1154,279:-116.073,-22.2055,-12.2715,-94.2074,0,-91.7992	1/2:22:0,15,7:0:0:15,7:532,234:-61.887,-18.522,-14.0065,-43.6976,0,-41.5904	1/2:39:0,22,16:0:0:22,16:780,560:-108.321,-44.7702,-38.1476,-63.5408,0,-58.7243	1/1:113:0,111,2:0:0:111,2:3925,63:-353.138,-33.4143,0,-348.221,-28.1898,-347.619	1/2:118:0,84,34:0:0:84,34:2975,1167:-333.643,-91.2824,-65.9959,-242.698,0,-232.463	1/2:32:0,20,12:0:0:20,12:716,424:-92.4774,-34.0922,-28.0716,-58.7355,0,-55.1231	1/1:30:0,30,0:0:0:30,0:1059,0:-95.592,-9.0309,0,-95.592,-9.0309,-95.592	1/2:82:0,50,32:0:0:50,32:1775,1132:-233.572,-88.9377,-73.8862,-144.981,0,-135.348	1/1:69:0,69,0:0:0:69,0:2412,0:-217.334,-20.7711,0,-217.334,-20.7711,-217.334	1/1:35:0,34,0:0:0:34,0:1206,0:-108.491,-10.235,0,-108.491,-10.235,-108.491	1/1:66:0,66,0:0:0:66,0:2342,0:-210.961,-19.868,0,-210.961,-19.868,-210.961	1/2:33:0,20,13:0:0:20,13:694,448:-91.9781,-35.5577,-29.5371,-56.7598,0,-52.8464	1/1:24:0,24,0:0:0:24,0:850,0:-76.8201,-7.22472,0,-76.8201,-7.22472,-76.8201	1/1:16:0,16,0:0:0:16,0:568,0:-51.4519,-4.81648,0,-51.4519,-4.81648,-51.4519	1/2:16:0,11,4:0:0:11,4:383,133:-41.3141,-10.1523,-6.84101,-31.1463,0,-29.9421	1/2:170:0,84,84:0:0:84,84:2979,2950:-477.83,-235.178,-209.891,-242.721,0,-217.434	1/2:108:0,54,54:0:0:54,54:1915,1878:-304.155,-148.186,-131.931,-156.315,0,-140.059	1/1:218:0,216,1:0:0:216,1:7652,36:-687.885,-65.0225,0,-684.949,-62.0118,-684.648	1/2:101:0,59,41:0:0:59,41:2074,1401:-280.285,-111.559,-93.7984,-168.715,0,-156.373	1/1:80:0,79,1:0:0:79,1:2819,36:-253.044,-23.7814,0,-250.192,-20.5797,-249.891	1/2:71:0,53,18:0:0:53,18:1882,640:-204.406,-51.0523,-35.0977,-153.703,0,-148.284	1/1:268:0,268,0:0:0:268,0:9489,0:-853.58,-80.676,0,-853.58,-80.676,-853.58	1/2:175:0,101,74:0:0:101,74:3566,2588:-495.294,-204.918,-174.514,-290.721,0,-268.445	1/2:28:0,14,14:0:0:14,14:487,485:-78.2842,-38.6822,-34.4678,-39.9448,0,-35.7304	1/1:249:0,248,0:0:0:248,0:8751,0:-787.008,-74.6554,0,-787.008,-74.6554,-787.008	1/2:125:0,87,37:0:0:87,37:3081,1310:-354.279,-103.408,-77.2184,-250.937,0,-239.799	1/1:88:0,88,0:0:0:88,0:3131,0:-281.96,-26.4906,0,-281.96,-26.4906,-281.96	1/1:6:0,6,0:0:0:6,0:208,0:-19.0591,-1.80618,0,-19.0591,-1.80618,-19.0591	1/2:19:0,16,3:0:0:16,3:546,104:-52.8895,-8.58334,-3.76686,-44.6453,0,-43.7422	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/2:21:0,10,11:0:0:10,11:351,379:-58.5238,-29.9496,-26.9393,-28.9164,0,-25.605	1/1:176:0,175,0:0:0:175,0:6158,0:-553.82,-52.6803,0,-553.82,-52.6803,-553.82	1/2:108:0,69,39:0:0:69,39:2443,1354:-306.379,-107.368,-86.5969,-199.355,0,-187.614	1/2:33:0,24,9:0:0:24,9:864,307:-94.8398,-24.3198,-17.0951,-70.8578,0,-68.1486	1/2:6:0,5,1:0:0:5,1:176,36:-16.73,-3.20167,-1.69652,-13.8759,0,-13.5749	1/1:115:0,112,1:0:0:112,1:3934,32:-353.911,-33.7154,0,-351.369,-31.1872,-351.068	1/1:28:0,28,0:0:0:28,0:993,0:-89.5702,-8.42884,0,-89.5702,-8.42884,-89.5702	1/2:187:0,117,70:0:0:117,70:4136,2414:-526.405,-189.876,-154.656,-336.87,0,-315.798	1/2:31:0,22,9:0:0:22,9:777,309:-88.2621,-24.9765,-18.3538,-63.6277,0,-60.9184	1/1:37:0,37,0:0:0:37,0:1324,0:-119.448,-11.1381,0,-119.448,-11.1381,-119.448	1/2:117:0,80,37:0:0:80,37:2797,1303:-332.704,-105.245,-81.1622,-227.809,0,-216.67	1/1:162:0,161,1:0:0:161,1:5668,36:-509.884,-48.4658,0,-506.946,-45.1686,-506.645	1/1:136:0,135,0:0:0:135,0:4760,0:-428.068,-40.6391,0,-428.068,-40.6391,-428.068	1/2:50:0,34,16:0:0:34,16:1181,550:-139.651,-44.1752,-33.9402,-95.8165,0,-91	1/2:80:0,48,31:0:0:48,31:1696,1104:-226.289,-88.2031,-73.7537,-138.077,0,-128.745	1/2:138:0,95,43:0:0:95,43:3388,1508:-397.93,-121.741,-93.1434,-276.539,0,-263.594	1/2:6:0,3,3:0:0:3,3:108,108:-17.8134,-8.99805,-8.09496,-9.17208,0,-8.26899	1/2:120:0,72,48:0:0:72,48:2588,1693:-342.061,-130.934,-109.26,-211.472,0,-197.022	1/2:17:0,10,7:0:0:10,7:356,243:-48.8826,-19.878,-16.8677,-29.3532,0,-27.246	1/1:12:0,12,0:0:0:12,0:395,0:-35.8656,-3.61236,0,-35.8656,-3.61236,-35.8656	1/1:99:0,98,0:0:0:98,0:3454,0:-310.544,-29.5009,0,-310.544,-29.5009,-310.544	1/2:25:0,13,12:0:0:13,12:456,416:-70.7276,-33.6136,-29.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chr11	98499	.	C	T	49877.9	PASS	AB=0.449135;ABP=151.017;AC=52;AF=0.276596;AN=188;AO=2963;CIGAR=1X;DP=11451;DPB=11451;DPRA=1.3501;EPP=6085.89;EPPR=17453;GTI=2;LEN=1;MEANALT=1.07018;MQM=59.9217;MQMR=59.9297;NS=94;NUMALT=1;ODDS=1.69907;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105968;QR=301638;RO=8482;RPL=41;RPP=6085.89;RPPR=17461.5;RPR=2922;RUN=1;SAF=2963;SAP=6437.08;SAR=0;SRF=8481;SRP=18412.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:17,40:17:599:40:1428:-111.659,0,-37.0794	0/1:96:48,48:48:1708:48:1711:-125.376,0,-125.104	0/1:262:157,105:157:5619:105:3749:-258.732,0,-426.961	0/1:276:150,126:150:5338:126:4493:-321.453,0,-397.427	0/0:134:134,0:134:4780:0:0:0,-40.338,-430.354	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.948	0/1:117:59,58:59:2112:58:2088:-152.969,0,-155.128	0/1:227:132,95:132:4690:95:3402:-238.06,0,-352.979	0/1:101:52,48:52:1846:48:1728:-125.489,0,-136.015	0/1:104:60,44:60:2134:44:1572:-110.464,0,-161.02	0/0:104:104,0:104:3686:0:0:0,-31.3071,-331.94	0/0:98:97,0:97:3463:0:0:0,-29.1999,-311.522	0/0:62:62,0:62:2204:0:0:0,-18.6639,-198.615	0/1:104:56,48:56:1999:48:1706:-122.517,0,-148.876	0/0:61:61,0:61:2161:0:0:0,-18.3628,-194.756	0/0:62:62,0:62:2197:0:0:0,-18.6639,-197.994	0/1:61:36,25:36:1275:25:883:-61.4246,0,-96.6813	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:59:35,24:35:1243:24:864:-60.3218,0,-94.4131	0/1:292:160,132:160:5690:132:4740:-338.85,0,-424.284	0/1:152:75,77:75:2649:77:2764:-203.157,0,-191.711	0/1:106:43,63:43:1548:63:2264:-172.113,0,-107.704	0/1:98:42,56:42:1495:56:2004:-151.133,0,-105.342	0/1:66:27,39:27:960:39:1400:-106.431,0,-66.7184	0/0:70:70,0:70:2486:0:0:0,-21.0721,-223.992	0/1:331:186,144:186:6555:144:5160:-364.838,0,-490.317	0/0:379:379,0:379:13471:0:0:0,-114.09,-1212.12	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:325:324,1:324:11585:1:36:0,-94.2365,-1038.92	0/1:115:77,38:77:2725:38:1338:-86.0924,0,-210.874	0/0:71:71,0:71:2514:0:0:0,-21.3731,-226.51	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:155:78,77:78:2791:77:2758:-201.531,0,-204.767	0/0:178:178,0:178:6311:0:0:0,-53.5833,-568.087	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.653	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:203:120,83:120:4246:83:2980:-207.323,0,-321.211	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/0:239:239,0:239:8462:0:0:0,-71.9462,-761.399	0/0:52:52,0:52:1836:0:0:0,-15.6536,-165.521	0/1:57:29,28:29:1035:28:1004:-73.5172,0,-76.3044	0/1:91:45,46:45:1578:46:1652:-121.575,0,-114.544	0/1:161:89,72:89:3128:72:2568:-182.898,0,-233.279	0/0:257:257,0:257:9147:0:0:0,-77.3647,-823.165	0/1:68:45,23:45:1608:23:824:-54.0133,0,-124.54	0/1:156:97,59:97:3426:59:2108:-143.029,0,-261.593	0/1:140:72,68:72:2572:68:2440:-177.711,0,-189.586	0/1:27:18,9:18:623:9:324:-21.378,0,-48.2653	0/1:253:138,114:138:4944:114:4088:-292.016,0,-369.029	0/1:124:71,53:71:2540:53:1908:-134.67,0,-191.523	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:171:105,66:105:3726:66:2361:-161.272,0,-284.067	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:11:9,2:9:305:2:72:-3.52539,0,-24.4659	0/1:12:7,5:7:244:5:180:-12.9397,0,-18.6871	0/0:126:126,0:126:4451:0:0:0,-37.9298,-400.764	0/1:132:67,65:67:2363:65:2313:-168.693,0,-173.188	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:196:195,1:195:6949:1:36:0,-55.4036,-621.88	0/1:239:125,113:125:4458:113:4028:-290.685,0,-329.386	0/1:69:41,28:41:1454:28:1004:-69.9048,0,-110.383	0/0:161:160,1:160:5651:1:36:0,-44.8676,-505.118	0/1:190:124,66:124:4421:66:2357:-155.192,0,-340.829	0/1:336:141,195:141:5010:195:6963:-525.585,0,-349.904	0/1:91:48,43:48:1684:43:1544:-111.855,0,-124.445	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.266	0/1:39:22,17:22:788:17:599:-42.4979,0,-59.5046	0/1:20:17,3:17:603:3:108:-4.04981,0,-48.5789	0/1:141:75,66:75:2652:66:2345:-168.775,0,-196.375	0/1:100:70,30:70:2499:30:1076:-67.0499,0,-194.282	0/1:204:123,81:123:4389:81:2883:-198.297,0,-333.772	0/0:233:233,0:233:8316:0:0:0,-70.14,-748.446	0/0:309:308,1:308:10936:1:36:0,-89.42,-980.461	0/0:156:155,1:155:5542:1:36:0,-43.3624,-495.306	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	0/1:145:92,53:92:3300:53:1900:-127.629,0,-253.565	0/0:165:165,0:165:5870:0:0:0,-49.6699,-528.211	0/0:336:336,0:336:11941:0:0:0,-101.146,-1074.55	0/1:54:37,17:37:1323:17:608:-38.7964,0,-103.116	0/1:80:49,31:49:1748:31:1103:-75.4974,0,-133.522	0/1:45:29,16:29:1031:16:576:-38.6286,0,-79.5563	0/0:142:141,0:141:5016:0:0:0,-42.4452,-451.07	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:79:39,40:39:1365:40:1423:-104.585,0,-99.365	0/1:105:61,44:61:2142:44:1557:-108.724,0,-161.437	0/0:82:82,0:82:2923:0:0:0,-24.6845,-263.304	0/1:173:97,76:97:3466:76:2720:-192.965,0,-260.073	0/1:73:19,54:19:667:54:1940:-152.901,0,-38.3794	0/0:243:243,0:243:8681:0:0:0,-73.1503,-781.273	0/0:107:107,0:107:3796:0:0:0,-32.2102,-341.836
chr11	208830	.	AATCC	AGTCC	91069.3	PASS	AB=0.483671;ABP=12.3709;AC=134;AF=0.712766;AN=188;AO=4494;CIGAR=1M1X3M;DP=6615;DPB=6616.4;DPRA=71.1183;EPP=9761.61;EPPR=4500.13;GTI=3;LEN=1;MEANALT=1.39785;MQM=59.9902;MQMR=59.9894;NS=94;NUMALT=1;ODDS=1.0554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160561;QR=72648;RO=2075;RPL=4494;RPP=9761.61;RPPR=4508.82;RPR=0;RUN=1;SAF=0;SAP=9761.61;SAR=4494;SRF=1;SRP=4500.13;SRR=2074;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:19,17:19:671:17:608:-44.2149,0,-49.8796	0/1:105:50,55:50:1738:55:1968:-145.787,0,-125.093	0/1:104:55,49:55:1900:49:1760:-127.377,0,-139.968	0/1:120:65,55:65:2276:55:1943:-139.019,0,-168.979	1/1:52:0,52:0:0:52:1824:-164.436,-15.6536,0	1/1:57:0,53:0:0:53:1892:-170.259,-15.9546,0	0/1:108:46,61:46:1591:61:2188:-164.615,0,-110.908	0/1:118:50,68:50:1745:68:2425:-182.983,0,-121.812	0/1:102:38,64:38:1328:64:2285:-175.205,0,-89.1125	0/1:72:26,45:26:895:45:1620:-124.357,0,-59.1292	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:57:0,57:0:0:57:2048:-184.232,-17.1587,0	0/1:38:20,18:20:688:18:636:-46.1289,0,-50.8001	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:52:0,51:0:0:51:1823:-164.059,-15.3525,0	0/1:34:13,21:13:450:21:752:-57.7712,0,-30.5941	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:26:12,14:12:428:14:504:-37.8713,0,-31.0322	0/1:108:57,51:57:2000:51:1824:-131.57,0,-147.403	0/1:224:91,130:91:3203:130:4648:-351.608,0,-221.621	0/1:95:72,23:72:2526:23:824:-45.8855,0,-198.995	0/1:68:27,39:27:923:39:1404:-106.431,0,-63.1513	0/1:84:57,27:57:2014:27:968:-62.1508,0,-156.246	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	0/1:194:100,94:100:3516:94:3368:-244.936,0,-258.253	1/1:159:0,158:0:0:158:5635:-506.912,-47.5627,0	1/1:21:0,21:0:0:21:743:-67.194,-6.32163,0	1/1:158:0,153:0:0:153:5437:-489.121,-46.0576,0	0/1:82:37,45:37:1279:45:1608:-120.326,0,-90.7252	1/1:84:0,83:0:0:83:2962:-266.56,-24.9855,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:20:0,20:0:0:20:720:-65.1254,-6.0206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,5:0:0:5:180:-16.1922,-1.50515,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:192:89,102:89:3145:102:3668:-272.465,0,-225.423	1/1:118:0,116:0:0:116:4160:-374.19,-34.9195,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:74:29,45:29:1011:45:1620:-123.814,0,-68.9368	1/1:32:0,31:0:0:31:1104:-99.3109,-9.33193,0	1/1:89:0,89:0:0:89:3173:-285.475,-26.7917,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:39:23,16:23:808:16:576:-40.4348,0,-61.299	0/1:92:51,41:51:1798:41:1476:-105.441,0,-134.407	0/1:75:41,33:41:1425:33:1176:-83.6184,0,-106.016	1/1:113:0,112:0:0:112:3997:-359.559,-33.7154,0	0/1:61:27,34:27:921:34:1224:-92.1042,0,-64.8364	0/1:73:34,38:34:1200:38:1368:-101.435,0,-86.3203	0/1:157:76,81:76:2693:81:2912:-215.053,0,-195.354	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:82:45,37:45:1557:37:1313:-93.7852,0,-115.732	0/1:14:8,6:8:277:6:216:-15.5761,0,-21.0515	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:75:36,39:36:1269:39:1400:-103.722,0,-91.9344	1/1:56:1,51:1:36:51:1832:-161.563,-12.4151,0	0/1:7:2,5:2:67:5:161:-12.6993,0,-4.25563	0/1:8:2,6:2:58:6:216:-17.3823,0,-3.10006	1/1:69:0,69:0:0:69:2433:-219.225,-20.7711,0	0/1:101:52,47:52:1787:47:1675:-120.875,0,-130.946	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:133:0,132:0:0:132:4725:-425.047,-39.736,0	0/1:113:59,54:59:2082:54:1913:-138.429,0,-153.634	0/1:49:21,27:21:726:27:960:-72.0516,0,-50.9933	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:119:66,53:66:2286:53:1884:-134.014,0,-170.177	0/1:135:96,39:96:3378:39:1404:-86.0202,0,-263.6	0/1:17:11,6:11:375:6:212:-14.3073,0,-28.9608	1/1:45:0,44:0:0:44:1576:-141.772,-13.2453,0	0/1:69:35,34:35:1237:34:1212:-88.6153,0,-90.8631	0/1:13:4,9:4:143:9:316:-24.8655,0,-9.30805	0/1:83:33,49:33:1165:49:1748:-132.559,0,-80.1131	0/1:36:22,14:22:777:14:504:-34.861,0,-59.4152	0/1:103:63,40:63:2209:40:1421:-97.1712,0,-168.067	1/1:101:0,99:0:0:99:3526:-317.187,-29.802,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:56:0,56:0:0:56:1996:-179.914,-16.8577,0	0/1:11:6,5:6:211:5:176:-12.8737,0,-16.0223	0/1:70:35,35:35:1233:35:1230:-89.9278,0,-90.2019	1/1:44:0,44:0:0:44:1560:-140.69,-13.2453,0	1/1:222:0,220:0:0:220:7834:-704.814,-66.2266,0	0/1:92:54,38:54:1924:38:1360:-95.0058,0,-145.742	0/1:44:25,19:25:886:19:680:-48.2838,0,-66.8131	0/1:56:27,29:27:959:29:1029:-76.0635,0,-69.7685	1/1:132:0,131:0:0:131:4700:-422.853,-39.4349,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:77:45,32:45:1576:32:1144:-80.0902,0,-118.948	0/1:42:20,22:20:706:22:777:-57.6071,0,-51.2219	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:74:51,22:51:1766:22:792:-49.2707,0,-136.886	0/1:65:47,18:47:1642:18:644:-38.7236,0,-128.498	1/1:92:0,91:0:0:91:3241:-291.603,-27.3937,0	1/1:73:1,70:1:36:70:2512:-222.74,-18.1314,0
chr11	228527	.	T	C	229830	PASS	AB=0.515317;ABP=43.7207;AC=54;AF=0.287234;AN=188;AO=10312;CIGAR=1X;DP=35871;DPB=35871;DPRA=1.16607;EPP=22360.5;EPPR=55334.4;GTI=0;LEN=1;MEANALT=1.06349;MQM=59.8767;MQMR=59.9658;NS=94;NUMALT=1;ODDS=7.90348;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=363351;QR=909686;RO=25553;RPL=6838;RPP=2386.01;RPPR=10134.6;RPR=3474;RUN=1;SAF=6834;SAP=2374.69;SAR=3478;SRF=18222;SRP=10082.7;SRR=7331;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:79:38,41:38:1341:41:1411:-103.483,0,-97.2067	0/1:434:226,208:226:8008:208:7371:-532.789,0,-589.941	0/1:258:125,133:125:4461:133:4669:-342.652,0,-323.994	0/1:597:268,328:268:9540:328:11521:-857.019,0,-678.9	0/0:162:162,0:162:5776:0:0:0,-48.7669,-519.303	0/0:152:152,0:152:5402:0:0:0,-45.7566,-486.303	0/1:396:167,229:167:5952:229:8143:-613.684,0,-416.58	0/1:240:112,128:112:3991:128:4534:-335.97,0,-287.12	0/1:205:114,91:114:4065:91:3162:-223.034,0,-304.325	0/1:250:105,145:105:3718:145:5084:-382.443,0,-259.519	0/0:720:720,0:720:25733:0:0:0,-216.742,-2314.05	0/0:195:195,0:195:6906:0:0:0,-58.7008,-621.504	0/0:197:197,0:197:6962:0:0:0,-59.3029,-626.547	0/1:203:99,104:99:3518:104:3678:-270.117,0,-255.711	0/0:151:151,0:151:5396:0:0:0,-45.4555,-485.751	0/0:212:211,0:211:7530:0:0:0,-63.5173,-677.383	0/1:160:74,86:74:2638:86:3043:-225.927,0,-189.501	0/0:172:172,0:172:6140:0:0:0,-51.7772,-552.685	0/1:363:185,178:185:6587:178:6274:-455.485,0,-483.638	0/1:506:245,261:245:8714:261:9238:-679.025,0,-631.933	0/1:374:171,203:171:6099:203:7163:-532.074,0,-436.428	0/1:172:51,121:51:1820:121:4257:-331.522,0,-112.304	0/1:208:107,101:107:3791:101:3573:-259.145,0,-278.774	0/1:278:131,147:131:4676:147:5119:-377.166,0,-337.276	0/0:186:186,0:186:6613:0:0:0,-55.9916,-595.251	0/1:687:358,329:358:12732:329:11578:-835.085,0,-938.9	0/0:718:718,0:718:25469:0:0:0,-216.14,-2291.51	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.037	0/0:625:625,0:625:22255:0:0:0,-188.144,-2002.32	0/1:269:132,137:132:4716:137:4833:-354.148,0,-343.622	0/0:304:304,0:304:10813:0:0:0,-91.5131,-973.079	0/0:1001:999,2:999:35629:2:72:0,-294.494,-3198.62	0/0:795:795,0:795:28369:0:0:0,-239.319,-2552.19	0/0:905:905,0:905:32313:0:0:0,-272.432,-2907.16	0/0:1676:1674,2:1674:59556:2:72:0,-497.69,-5351.08	0/0:738:736,1:736:26293:1:36:0,-218.621,-2361.98	0/1:466:251,215:251:8935:215:7483:-533.252,0,-663.853	0/0:344:343,1:343:12226:1:36:0,-99.956,-1096.31	0/0:710:709,0:709:25210:0:0:0,-213.43,-2268	0/1:482:278,204:278:9910:204:7226:-505.229,0,-746.744	0/1:388:197,191:197:6985:191:6766:-492.127,0,-511.912	0/0:308:308,0:308:11016:0:0:0,-92.7172,-991.332	0/0:299:299,0:299:10599:0:0:0,-90.008,-953.829	0/0:179:179,0:179:6325:0:0:0,-53.8844,-569.303	0/1:161:78,83:78:2751:83:2834:-206.79,0,-199.368	0/1:256:132,124:132:4686:124:4370:-316.413,0,-344.837	0/1:136:72,64:72:2573:64:2267:-163.349,0,-190.878	0/0:410:406,4:406:14468:4:144:0,-110.155,-1288.61	0/1:256:122,134:122:4336:134:4752:-350.615,0,-313.352	0/1:336:175,161:175:6217:161:5730:-414.666,0,-458.482	0/1:226:96,129:96:3403:129:4569:-343.429,0,-238.541	0/1:914:457,457:457:16218:457:16145:-1177.6,0,-1184.16	0/1:282:141,141:141:5027:141:5002:-365.422,0,-367.652	0/1:112:58,54:58:2062:54:1901:-137.648,0,-152.13	0/0:807:807,0:807:28808:0:0:0,-242.931,-2591.85	0/1:380:160,219:160:5679:219:7688:-577.589,0,-396.872	0/0:81:79,2:79:2804:2:72:0,-17.5467,-245.762	0/1:700:379,321:379:13578:321:11414:-816.419,0,-1011.08	0/1:901:398,503:398:14238:503:17861:-1335.84,0,-1009.95	0/0:220:220,0:220:7822:0:0:0,-66.2266,-704.014	0/1:237:121,116:121:4269:116:4071:-294.864,0,-313.046	0/1:569:283,286:283:10099:286:10083:-736.127,0,-737.556	0/0:166:166,0:166:5936:0:0:0,-49.971,-534.349	0/1:433:170,263:170:6076:263:9244:-701.394,0,-416.594	0/1:150:70,80:70:2470:80:2798:-206.875,0,-177.397	0/0:207:207,0:207:7366:0:0:0,-62.3132,-662.789	0/1:417:187,230:187:6633:230:8041:-598.09,0,-471.521	0/1:181:55,126:55:1953:126:4416:-343.125,0,-121.557	0/1:529:280,249:280:9984:249:8788:-631.668,0,-739.254	0/0:140:140,0:140:4941:0:0:0,-42.1442,-444.844	0/1:204:102,102:102:3626:102:3610:-263.695,0,-265.136	0/1:902:436,466:436:15567:466:16423:-1206.19,0,-1129.2	0/1:237:124,113:124:4391:113:4001:-288.931,0,-324.021	0/1:152:68,84:68:2404:84:2968:-221.595,0,-170.859	0/1:596:304,292:304:10799:292:10212:-739.582,0,-792.088	0/0:367:364,3:364:12939:3:108:0,-100.403,-1154.25	0/0:298:297,1:297:10527:1:27:0,-87.0072,-944.627	0/0:269:269,0:269:9592:0:0:0,-80.9771,-863.238	0/1:949:434,515:434:15531:515:18194:-1351.4,0,-1111.7	0/1:264:138,126:138:4924:126:4470:-322.999,0,-363.84	0/0:262:262,0:262:9304:0:0:0,-78.8699,-837.33	0/0:493:493,0:493:17522:0:0:0,-148.408,-1576.61	0/1:263:132,131:132:4667:131:4602:-333.989,0,-341.024	0/1:150:73,77:73:2612:77:2688:-197.004,0,-189.877	0/1:202:103,99:103:3655:99:3397:-245.136,0,-268.323	0/0:333:332,1:332:11756:1:36:0,-96.6447,-1054.3	0/0:94:94,0:94:3281:0:0:0,-28.2968,-295.509	0/1:209:113,96:113:3990:96:3301:-234.387,0,-296.373	0/1:168:87,81:87:3111:81:2787:-200.493,0,-229.643	0/0:650:650,0:650:23210:0:0:0,-195.669,-2088.17	0/1:1293:641,652:641:22864:652:23001:-1680.25,0,-1667.93	0/1:198:57,141:57:2036:141:4994:-390.006,0,-123.908	0/0:4:4,0:4:125:0:0:0,-1.20412,-11.5586	0/0:269:269,0:269:9497:0:0:0,-80.9771,-854.692
chr11	279004	.	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chr11	279024	.	C	A	10256.7	PASS	AB=0.472168;ABP=20.295;AC=50;AF=0.265957;AN=188;AO=1238;CIGAR=1X;DP=5542;DPB=5542;DPRA=0.821806;EPP=2605.14;EPPR=8970.76;GTI=6;LEN=1;MEANALT=1;MQM=27.0113;MQMR=31.6715;NS=94;NUMALT=1;ODDS=0.858758;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44356;QR=153676;RO=4304;RPL=1231;RPP=2630.84;RPPR=9047.49;RPR=7;RUN=1;SAF=3;SAP=2665.3;SAR=1235;SRF=9;SRP=9271.02;SRR=4295;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:1,11:1:36:11:396:-23.8294,-0.876158,0	0/1:69:41,28:41:1464:28:1004:-46.0923,0,-78.103	0/1:65:20,45:20:716:45:1620:-87.87,0,-30.0902	0/0:149:149,0:149:5333:0:0:0,-44.8535,-409.399	0/0:13:13,0:13:468:0:0:0,-3.91339,-34.8388	0/0:44:44,0:44:1546:0:0:0,-13.2453,-105.811	0/0:81:81,0:81:2916:0:0:0,-24.3834,-225.115	0/1:99:28,71:28:977:71:2529:-138.138,0,-37.004	0/1:64:33,31:33:1188:31:1116:-54.5559,0,-66.7551	0/1:62:33,29:33:1169:29:1044:-50.2217,0,-73.1553	0/1:52:26,26:26:936:26:932:-45.5009,0,-57.3527	0/0:39:39,0:39:1404:0:0:0,-11.7402,-96.6049	0/0:25:22,3:22:788:3:108:0,-0.10967,-45.1347	0/1:30:16,14:16:572:14:504:-24.8369,0,-32.0377	0/0:27:27,0:27:972:0:0:0,-8.12781,-74.3368	0/1:45:28,17:28:1008:17:612:-26.5563,0,-58.9807	0/1:54:33,21:33:1158:21:756:-33.6467,0,-63.0695	0/0:39:39,0:39:1400:0:0:0,-11.7402,-94.4997	0/0:37:37,0:37:1328:0:0:0,-11.1381,-91.7035	0/1:155:99,56:99:3556:56:2012:-86.1123,0,-228.439	0/1:100:41,59:41:1468:59:2097:-110.624,0,-76.828	0/0:43:43,0:43:1540:0:0:0,-12.9443,-123.806	0/1:20:12,8:12:432:8:284:-13.3996,0,-27.6258	0/1:84:26,58:26:928:58:2080:-112.647,0,-41.4166	0/1:47:13,34:13:468:34:1212:-67.0237,0,-19.953	0/0:199:199,0:199:7026:0:0:0,-59.905,-565.721	0/0:97:97,0:97:3424:0:0:0,-29.1999,-246.86	0/0:28:28,0:28:1008:0:0:0,-8.42884,-73.1555	0/1:151:80,71:80:2823:71:2548:-126.112,0,-183.31	0/1:106:48,58:48:1720:58:2088:-107.373,0,-92.7488	0/1:49:23,26:23:809:26:932:-46.7783,0,-47.8384	0/0:10:10,0:10:360:0:0:0,-3.0103,-25.9604	0/0:17:17,0:17:612:0:0:0,-5.11751,-44.5517	1/1:3:0,3:0:0:3:108:-7.41608,-0.90309,0	0/1:10:3,7:3:108:7:248:-13.8788,0,-4.65107	0/0:7:7,0:7:252:0:0:0,-2.10721,-17.5117	0/1:116:94,22:94:3353:22:792:-17.4532,0,-235.535	0/0:31:31,0:31:1116:0:0:0,-9.33193,-81.2771	0/1:38:24,14:24:849:14:504:-22.6914,0,-47.0422	1/1:2:0,2:0:0:2:72:-5.03234,-0.60206,0	0/0:88:88,0:88:3137:0:0:0,-26.4906,-227.753	0/0:31:31,0:31:1112:0:0:0,-9.33193,-81.5008	0/1:63:15,48:15:536:48:1705:-94.0706,0,-21.039	0/1:46:37,9:37:1319:9:324:-7.87114,0,-87.485	0/1:38:28,10:28:1008:10:360:-13.2069,0,-66.6717	0/0:49:49,0:49:1749:0:0:0,-14.7505,-140.742	0/1:56:29,27:29:1036:27:957:-46.8509,0,-55.0349	0/0:82:82,0:82:2918:0:0:0,-24.6845,-228.265	0/0:100:100,0:100:3592:0:0:0,-30.103,-279.721	0/1:77:42,35:42:1504:35:1256:-60.4553,0,-94.86	0/0:135:135,0:135:4844:0:0:0,-40.639,-388.837	0/1:8:7,1:7:252:1:36:-0.24036,0,-17.583	0/0:76:76,0:76:2732:0:0:0,-22.8783,-188.175	0/1:21:7,14:7:248:14:504:-26.2706,0,-14.2504	0/0:16:15,1:15:540:1:36:0,-2.16788,-34.5795	0/1:81:31,50:31:1097:50:1796:-93.8134,0,-55.5362	0/0:15:15,0:15:540:0:0:0,-4.51545,-42.2812	0/1:12:10,2:10:341:2:72:-1.41998,0,-23.6996	0/0:23:23,0:23:798:0:0:0,-6.92369,-64.4899	0/1:60:27,33:27:953:33:1180:-60.4103,0,-51.5643	0/0:100:100,0:100:3569:0:0:0,-30.103,-277.097	0/1:9:1,8:1:36:8:288:-16.6255,0,-0.414368	0/0:227:227,0:227:8114:0:0:0,-68.3338,-652.753	0/0:87:87,0:87:3105:0:0:0,-26.1896,-239.989	0/1:91:52,39:52:1860:39:1396:-64.4891,0,-106.827	0/0:28:28,0:28:989:0:0:0,-8.42884,-77.8418	0/0:58:57,1:57:2044:1:36:0,-14.8111,-156.002	0/0:14:13,1:13:464:1:36:0,-1.56582,-34.0493	0/0:16:16,0:16:576:0:0:0,-4.81648,-41.6105	0/0:29:29,0:29:1036:0:0:0,-8.72987,-71.3808	0/0:64:64,0:64:2285:0:0:0,-19.2659,-185.131	0/1:19:12,7:12:428:7:252:-11.2315,0,-27.565	0/1:86:33,53:33:1172:53:1900:-99.1427,0,-54.7824	0/1:55:32,23:32:1148:23:824:-38.473,0,-63.6851	0/1:103:44,59:44:1559:59:2120:-112.001,0,-80.6331	0/0:128:128,0:128:4562:0:0:0,-38.5318,-353.249	0/0:41:41,0:41:1438:0:0:0,-12.3422,-102.148	0/0:96:93,3:93:3340:3:108:0,-20.6074,-219.431	0/1:12:7,5:7:252:5:180:-9.16959,0,-13.8993	0/0:88:88,0:88:3164:0:0:0,-26.4906,-227.458	0/0:52:52,0:52:1872:0:0:0,-15.6536,-127.867	0/0:131:131,0:131:4673:0:0:0,-39.4349,-359.486	0/1:62:49,13:49:1737:13:460:-12.4667,0,-117.481	0/0:36:36,0:36:1281:0:0:0,-10.8371,-100.098	0/1:40:34,6:34:1216:6:216:-2.5261,0,-80.8084	0/1:92:59,33:59:2109:33:1176:-50.2863,0,-136.385	0/1:21:12,9:12:432:9:324:-15.2997,0,-24.1248	0/0:65:65,0:65:2328:0:0:0,-19.5669,-159.165	0/0:50:50,0:50:1792:0:0:0,-15.0515,-123.729	0/1:19:12,7:12:432:7:252:-10.5393,0,-25.0909	0/1:57:43,14:43:1540:14:496:-16.9457,0,-94.8403	0/1:25:12,13:12:432:13:468:-23.0405,0,-24.939	0/0:70:70,0:70:2504:0:0:0,-21.0721,-194.165	0/0:75:75,0:75:2700:0:0:0,-22.5772,-209.189
chr11	279051	.	A	C	9330.53	PASS	AB=0.470963;ABP=21.422;AC=50;AF=0.265957;AN=188;AO=1209;CIGAR=1X;DP=5434;DPB=5434;DPRA=0.821484;EPP=2619.64;EPPR=9125.44;GTI=6;LEN=1;MEANALT=1;MQM=26.7833;MQMR=31.369;NS=94;NUMALT=1;ODDS=0.738777;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43152;QR=151114;RO=4225;RPL=1209;RPP=2628.32;RPPR=9177.48;RPR=0;RUN=1;SAF=1;SAP=2619.64;SAR=1208;SRF=6;SRP=9125.44;SRR=4219;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:1,12:1:36:12:428:-26.1516,-1.17719,0	0/1:69:40,29:40:1428:29:1036:-48.3556,0,-76.2264	0/1:62:18,44:18:633:44:1561:-85.0981,0,-24.7142	0/0:146:146,0:146:5232:0:0:0,-43.9504,-401.967	0/0:13:13,0:13:468:0:0:0,-3.91339,-34.8388	0/0:43:43,0:43:1540:0:0:0,-12.9443,-105.096	0/0:81:81,0:81:2904:0:0:0,-24.3834,-224.264	0/1:101:30,71:30:1072:71:2548:-137.791,0,-41.2952	0/1:57:28,29:28:1008:29:1040:-51.7545,0,-51.9068	0/1:61:32,29:32:1144:29:1044:-50.5227,0,-70.0244	0/1:52:26,26:26:932:26:913:-44.9774,0,-57.1923	0/0:39:39,0:39:1383:0:0:0,-11.7402,-95.3445	0/0:27:24,3:24:860:3:108:0,-0.71173,-49.4733	0/1:29:16,13:16:563:13:468:-22.5236,0,-32.1786	0/0:25:25,0:25:900:0:0:0,-7.52575,-69.0189	0/1:44:28,16:28:1008:16:568:-24.3505,0,-60.2416	0/1:57:34,23:34:1207:23:828:-38.0516,0,-65.4129	0/0:39:39,0:39:1404:0:0:0,-11.7402,-94.5733	0/0:38:38,0:38:1364:0:0:0,-11.4391,-93.4037	0/1:155:99,56:99:3541:56:2008:-86.0512,0,-226.225	0/1:103:42,61:42:1484:61:2177:-114.146,0,-77.0251	0/0:43:43,0:43:1544:0:0:0,-12.9443,-123.91	0/1:20:12,8:12:432:8:288:-13.4741,0,-27.6258	0/1:82:26,56:26:928:56:2012:-107.906,0,-42.2183	0/1:45:13,32:13:464:32:1152:-61.9726,0,-20.4507	0/0:187:187,0:187:6692:0:0:0,-56.2926,-535.99	0/0:96:96,0:96:3417:0:0:0,-28.8989,-246.532	0/0:29:29,0:29:1040:0:0:0,-8.72987,-75.0357	0/1:147:79,68:79:2840:68:2429:-117.465,0,-185.097	0/1:104:48,56:48:1716:56:1989:-101.191,0,-91.1701	0/1:46:21,25:21:752:25:896:-44.7573,0,-43.6853	0/0:10:10,0:10:360:0:0:0,-3.0103,-25.9604	0/0:17:17,0:17:612:0:0:0,-5.11751,-44.5517	1/1:3:0,3:0:0:3:104:-7.35287,-0.90309,0	0/1:10:3,7:3:108:7:229:-13.227,0,-4.65107	0/0:7:7,0:7:248:0:0:0,-2.10721,-17.4371	0/1:108:87,21:87:3104:21:741:-16.8939,0,-218.156	0/0:28:28,0:28:1000:0:0:0,-8.42884,-72.6033	0/1:34:22,12:22:792:12:432:-17.947,0,-44.2154	1/1:2:0,2:0:0:2:72:-5.03234,-0.60206,0	0/0:85:85,0:85:3040:0:0:0,-25.5875,-219.529	0/0:30:30,0:30:1072:0:0:0,-9.0309,-78.1562	0/1:60:14,46:14:504:46:1648:-90.2013,0,-18.8033	0/1:45:36,9:36:1288:9:324:-8.17217,0,-85.8256	0/1:40:30,10:30:1049:10:360:-12.0611,0,-69.8092	0/0:48:48,0:48:1720:0:0:0,-14.4494,-138.468	0/1:55:28,27:28:1004:27:968:-47.7078,0,-52.9238	0/0:77:77,0:77:2772:0:0:0,-23.1793,-211.856	0/0:95:95,0:95:3408:0:0:0,-28.5978,-264.692	0/1:75:41,34:41:1460:34:1224:-58.7348,0,-92.0146	0/0:136:136,0:136:4856:0:0:0,-40.9401,-390.654	0/1:8:7,1:7:252:1:36:-0.24036,0,-17.583	0/0:71:71,0:71:2540:0:0:0,-21.3731,-174.503	0/1:21:7,14:7:237:14:504:-26.2706,0,-13.3905	0/0:13:12,1:12:424:1:36:0,-1.26479,-26.2606	0/1:79:30,49:30:1076:49:1730:-90.8676,0,-53.8287	0/0:15:15,0:15:532:0:0:0,-4.51545,-41.9595	0/1:11:9,2:9:320:2:72:-1.72101,0,-23.1044	0/0:21:21,0:21:752:0:0:0,-6.32163,-60.7617	0/1:57:24,33:24:860:33:1184:-61.3745,0,-45.4261	0/0:99:99,0:99:3547:0:0:0,-29.802,-274.863	0/1:9:1,8:1:36:8:284:-16.5637,0,-0.414368	0/0:226:226,0:226:8085:0:0:0,-68.0328,-649.449	0/0:87:87,0:87:3100:0:0:0,-26.1896,-240.438	0/1:92:53,39:53:1885:39:1373:-63.0366,0,-107.198	0/0:26:26,0:26:932:0:0:0,-7.82678,-71.8215	0/0:59:58,1:58:2080:1:36:0,-15.1122,-158.464	0/0:15:14,1:14:500:1:36:0,-1.86685,-36.8607	0/0:17:17,0:17:608:0:0:0,-5.11751,-44.1189	0/0:30:30,0:30:1072:0:0:0,-9.0309,-73.5158	0/0:61:61,0:61:2188:0:0:0,-18.3628,-176.636	0/1:21:14,7:14:504:7:252:-10.6294,0,-32.7475	0/1:80:31,49:31:1108:49:1744:-91.0666,0,-51.8106	0/1:53:30,23:30:1072:23:828:-38.814,0,-58.0492	0/1:96:43,53:43:1544:53:1896:-96.5386,0,-80.7107	0/0:122:122,0:122:4357:0:0:0,-36.7257,-337.008	0/0:41:41,0:41:1464:0:0:0,-12.3422,-103.164	0/0:94:92,2:92:3289:2:72:0,-23.2645,-217.703	0/1:11:7,4:7:252:4:144:-6.48849,0,-14.2004	0/0:88:88,0:88:3160:0:0:0,-26.4906,-226.825	0/0:51:51,0:51:1813:0:0:0,-15.3525,-124.612	0/0:133:133,0:133:4776:0:0:0,-40.037,-365.908	0/1:63:49,14:49:1755:14:489:-13.2217,0,-117.408	0/0:36:36,0:36:1292:0:0:0,-10.8371,-99.6079	0/1:40:33,7:33:1184:7:252:-4.90984,0,-78.157	0/1:93:60,33:60:2148:33:1161:-49.3589,0,-139.52	0/1:18:11,7:11:379:7:248:-10.7784,0,-21.3939	0/0:65:65,0:65:2332:0:0:0,-19.5669,-159.216	0/0:49:49,0:49:1751:0:0:0,-14.7505,-119.363	0/1:19:12,7:12:432:7:248:-10.4774,0,-25.0909	0/1:56:43,13:43:1544:13:464:-14.3343,0,-95.2149	0/1:26:13,13:13:468:13:468:-22.7395,0,-26.7695	0/0:70:70,0:70:2500:0:0:0,-21.0721,-193.717	0/0:74:74,0:74:2631:0:0:0,-22.2762,-206.257
chr11	319892	.	TTA	CCA,TCA	112536	PASS	AB=0.507927,0.487721;ABP=4.76597,7.22297;AC=135,53;AF=0.718085,0.281915;AN=188;AO=3889,1576;CIGAR=2X1M,1M1X1M;DP=5482;DPB=5482;DPRA=0,1.3682;EPP=8447.87,3416.57;EPPR=7.35324;GTI=0;LEN=2,1;MEANALT=1.76596,2.20339;MQM=51.4536,53.8883;MQMR=59.5;NS=94;NUMALT=2;ODDS=1.05044;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=135895,56065;QR=70;RO=2;RPL=0,0;RPP=8447.87,3425.25;RPPR=7.35324;RPR=3889,1576;RUN=1,1;SAF=0,1;SAP=8447.87,3416.57;SAR=3889,1575;SRF=0;SRP=7.35324;SRR=2;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:33:0,19,14:0:0:19,14:679,495:-95.5448,-40.5944,-34.8749,-55.304,0,-51.0896	1/2:39:0,19,17:0:0:19,17:684,604:-104.763,-49.0822,-43.3626,-55.6844,0,-50.5669	1/2:74:0,43,31:0:0:43,31:1493,1112:-211.632,-90.9576,-78.0133,-121.027,0,-111.695	1/2:95:0,42,52:0:0:42,52:1446,1847:-266.923,-150.148,-137.504,-116.765,0,-101.112	1/1:28:0,28,0:0:0:28,0:1000,0:-90.1021,-8.42884,0,-90.1021,-8.42884,-90.1021	1/1:31:0,31,0:0:0:31,0:1086,0:-97.7447,-9.33193,0,-97.7447,-9.33193,-97.7447	1/2:32:0,15,17:0:0:15,17:497,604:-89.5439,-49.4827,-44.9673,-40.4029,0,-35.2854	1/2:132:0,63,69:0:0:63,69:2229,2456:-381.067,-200.145,-181.18,-181.275,0,-160.504	1/2:60:1,22,37:1:36:22,37:786,1328:-168.69,-105.265,-101.58,-60.7847,0,-52.5842	1/2:61:0,25,36:0:0:25,36:878,1288:-176.448,-105.22,-97.6944,-71.5812,0,-60.7441	1/1:52:0,52,0:0:0:52,0:1810,0:-162.664,-15.6536,0,-162.664,-15.6536,-162.664	1/1:79:0,79,0:0:0:79,0:2731,0:-244.847,-23.7814,0,-244.847,-23.7814,-244.847	1/1:91:0,91,0:0:0:91,0:3198,0:-287.338,-27.3937,0,-287.338,-27.3937,-287.338	1/2:48:0,26,22:0:0:26,22:914,783:-137.986,-64.0446,-56.2179,-74.2942,0,-67.6716	1/1:33:0,33,0:0:0:33,0:1163,0:-104.633,-9.93399,0,-104.633,-9.93399,-104.633	1/1:44:0,44,0:0:0:44,0:1526,0:-137.33,-13.2453,0,-137.33,-13.2453,-137.33	1/2:25:0,10,15:0:0:10,15:356,536:-72.9674,-44.011,-41.0007,-29.3123,0,-24.7969	1/1:33:0,33,0:0:0:33,0:1167,0:-105.149,-9.93399,0,-105.149,-9.93399,-105.149	1/2:33:1,21,11:1:34:21,11:738,383:-87.9994,-28.3622,-24.7977,-57.1893,0,-56.6353	1/2:95:0,61,33:0:0:61,33:2155,1180:-270.869,-96.0735,-77.7107,-174.792,0,-164.858	1/2:51:0,27,24:0:0:27,24:951,856:-147.241,-70.0273,-61.8995,-77.5678,0,-70.3431	1/2:51:0,16,35:0:0:16,35:553,1252:-147.044,-102.286,-97.4694,-45.1062,0,-34.5701	1/2:44:0,26,18:0:0:26,18:907,635:-125.128,-51.8965,-44.0697,-73.5806,0,-68.1621	1/2:29:0,15,14:0:0:15,14:540,504:-85.3578,-41.4189,-36.9034,-44.2981,0,-40.0836	1/1:48:0,48,0:0:0:48,0:1676,0:-150.759,-14.4494,0,-150.759,-14.4494,-150.759	1/2:115:0,61,54:0:0:61,54:2140,1912:-328.855,-155.516,-137.154,-173.69,0,-157.434	1/1:89:0,89,0:0:0:89,0:3044,0:-272.871,-26.7917,0,-272.871,-26.7917,-272.871	1/1:24:0,24,0:0:0:24,0:834,0:-74.9,-7.22472,0,-74.9,-7.22472,-74.9	1/1:86:0,86,0:0:0:86,0:3057,0:-274.448,-25.8886,0,-274.448,-25.8886,-274.448	1/2:87:0,45,41:0:0:45,41:1524,1472:-243.255,-120,-106.453,-123.351,0,-111.009	1/1:44:0,44,0:0:0:44,0:1572,0:-141.339,-13.2453,0,-141.339,-13.2453,-141.339	1/1:13:0,13,0:0:0:13,0:464,0:-41.997,-3.91339,0,-41.997,-3.91339,-41.997	1/1:25:0,25,0:0:0:25,0:885,0:-79.787,-7.52575,0,-79.787,-7.52575,-79.787	1/1:11:0,11,0:0:0:11,0:381,0:-34.5674,-3.31133,0,-34.5674,-3.31133,-34.5674	1/1:7:0,7,0:0:0:7,0:250,0:-22.7975,-2.10721,0,-22.7975,-2.10721,-22.7975	1/1:16:0,16,0:0:0:16,0:535,0:-48.1628,-4.81648,0,-48.1628,-4.81648,-48.1628	1/2:132:0,76,56:0:0:76,56:2582,1997:-371.275,-162.863,-139.984,-208.761,0,-191.903	1/1:89:0,87,1:0:0:87,1:3033,30:-271.695,-26.1896,0,-269.299,-23.8236,-268.998	1/1:51:0,51,0:0:0:51,0:1764,0:-158.479,-15.3525,0,-158.479,-15.3525,-158.479	1/1:2:0,2,0:0:0:2,0:72,0:-6.81953,-0.60206,0,-6.81953,-0.60206,-6.81953	1/2:44:0,20,24:0:0:20,24:714,864:-128.603,-70.5625,-64.5419,-58.3973,0,-51.1726	1/1:37:0,37,0:0:0:37,0:1314,0:-118.227,-11.1381,0,-118.227,-11.1381,-118.227	1/1:100:0,100,0:0:0:100,0:3466,0:-311.35,-30.103,0,-311.35,-30.103,-311.35	1/1:41:0,41,0:0:0:41,0:1456,0:-130.88,-12.3422,0,-130.88,-12.3422,-130.88	1/2:45:0,22,23:0:0:22,23:766,820:-129.147,-67.073,-60.4504,-62.425,0,-55.5013	1/2:93:0,40,52:0:0:40,52:1377,1855:-262.281,-150.811,-138.77,-111.565,0,-95.9111	1/2:104:0,62,41:0:0:62,41:2178,1440:-293.559,-116.67,-98.0063,-176.88,0,-164.538	1/1:109:0,107,1:0:0:107,1:3751,36:-336.269,-32.2102,0,-333.336,-29.2324,-333.035	1/2:75:0,24,51:0:0:24,51:831,1824:-215.89,-148.844,-141.619,-67.3943,0,-52.0417	1/2:110:0,59,51:0:0:59,51:2079,1813:-316.251,-147.6,-129.839,-169.004,0,-153.652	1/2:43:0,23,20:0:0:23,20:818,716:-124.861,-58.4279,-51.5042,-66.7884,0,-60.7678	1/2:4:0,2,2:0:0:2,2:57,72:-10.6967,-6.21861,-5.61655,-4.79969,0,-4.19763	1/2:66:0,38,28:0:0:38,28:1347,1004:-191.659,-82.1553,-70.7161,-109.86,0,-101.431	1/2:47:0,28,19:0:0:28,19:986,660:-133.822,-53.9218,-45.4929,-80.2487,0,-74.5291	1/1:12:0,12,0:0:0:12,0:423,0:-38.3329,-3.61236,0,-38.3329,-3.61236,-38.3329	1/2:50:0,30,18:0:0:30,18:1074,640:-139.427,-52.077,-43.0461,-87.3469,0,-81.9284	1/1:16:0,16,0:0:0:16,0:565,0:-51.0066,-4.81648,0,-51.0066,-4.81648,-51.0066	1/2:5:0,1,4:0:0:1,4:36,144:-15.0111,-12.0844,-11.7834,-3.28545,0,-2.08133	1/2:13:0,11,2:0:0:11,2:377,72:-36.7239,-6.22497,-2.91364,-30.8555,0,-30.2534	1/1:44:0,44,0:0:0:44,0:1540,0:-138.554,-13.2453,0,-138.554,-13.2453,-138.554	1/2:102:0,44,58:0:0:44,58:1490,2084:-290.43,-170.01,-156.764,-120.767,0,-103.307	1/2:11:0,1,10:0:0:1,10:36,356:-32.2544,-29.3273,-29.0263,-3.28545,0,-0.275152	1/1:155:0,153,2:0:0:153,2:5400,72:-484.188,-46.0576,0,-478.322,-39.8326,-477.72	1/2:115:0,61,54:0:0:61,54:2115,1921:-327.87,-156.667,-138.304,-171.554,0,-155.298	1/2:55:0,30,24:0:0:30,24:1064,860:-156.477,-70.0304,-60.9995,-86.4431,0,-79.2183	1/1:60:0,59,1:0:0:59,1:2037,24:-182.634,-17.7608,0,-181.047,-15.962,-180.746	1/2:120:0,59,61:0:0:59,61:2045,2169:-342.492,-176.837,-159.076,-166.005,0,-147.642	1/2:71:0,32,39:0:0:32,39:1118,1396:-204.431,-114.019,-104.386,-90.7637,0,-79.0235	1/2:34:0,12,22:0:0:12,22:419,779:-97.6802,-63.7159,-60.1036,-34.3142,0,-27.6915	1/1:43:0,43,0:0:0:43,0:1491,0:-134.232,-12.9443,0,-134.232,-12.9443,-134.232	1/2:50:0,23,27:0:0:23,27:805,939:-141.864,-76.5805,-69.6568,-65.6316,0,-57.5038	1/2:19:0,10,9:0:0:10,9:337,324:-53.6908,-26.7547,-23.7444,-27.2829,0,-24.5736	1/2:107:0,42,65:0:0:42,65:1477,2306:-307.921,-188.015,-175.372,-120.258,0,-100.691	1/2:43:0,23,20:0:0:23,20:806,720:-124.488,-59.0411,-52.1174,-65.8014,0,-59.7808	1/2:73:0,31,42:0:0:31,42:1089,1499:-210.738,-122.362,-113.03,-88.7293,0,-76.0861	1/1:70:0,70,0:0:0:70,0:2428,0:-217.977,-21.0721,0,-217.977,-21.0721,-217.977	1/1:148:0,148,0:0:0:148,0:5135,0:-461.094,-44.5524,0,-461.094,-44.5524,-461.094	1/1:60:0,60,0:0:0:60,0:2105,0:-189.143,-18.0618,0,-189.143,-18.0618,-189.143	1/2:8:0,5,3:0:0:5,3:175,108:-23.3668,-9.1617,-7.65655,-14.5608,0,-13.6577	1/2:52:0,27,25:0:0:27,25:961,900:-151.592,-73.6752,-65.5474,-78.2738,0,-70.7481	1/1:47:0,47,0:0:0:47,0:1660,0:-149.362,-14.1484,0,-149.362,-14.1484,-149.362	1/1:111:0,110,1:0:0:110,1:3874,36:-347.373,-33.1133,0,-344.44,-29.8212,-344.139	1/2:54:0,37,17:0:0:37,17:1319,604:-156.613,-49.5001,-38.362,-107.468,0,-102.351	1/2:47:0,25,22:0:0:25,22:850,777:-131.732,-63.0753,-55.5496,-69.0013,0,-62.3786	1/2:40:0,25,15:0:0:25,15:853,527:-111.628,-42.9731,-35.4474,-69.0002,0,-64.4848	1/1:97:0,96,0:0:0:96,0:3324,0:-298.276,-28.8989,0,-298.276,-28.8989,-298.276	1/1:21:0,21,0:0:0:21,0:714,0:-64.435,-6.32163,0,-64.435,-6.32163,-64.435	1/2:58:0,33,25:0:0:33,25:1171,870:-165.649,-70.7282,-60.7942,-95.2702,0,-87.7445	1/2:62:0,35,26:0:0:35,26:1236,928:-176.045,-75.6314,-65.0954,-100.513,0,-92.6864	1/1:49:0,49,0:0:0:49,0:1721,0:-154.462,-14.7505,0,-154.462,-14.7505,-154.462	1/2:114:0,68,46:0:0:68,46:2376,1614:-323.81,-131.02,-110.55,-193.139,0,-179.291	1/2:47:0,19,28:0:0:19,28:666,982:-133.889,-80.1343,-74.4148,-54.1029,0,-45.6741	1/1:66:0,66,0:0:0:66,0:2267,0:-203.17,-19.868,0,-203.17,-19.868,-203.17	1/1:83:0,82,1:0:0:82,1:2876,36:-257.516,-24.6845,0,-254.583,-21.3923,-254.282
chr11	354267	.	CATT	TATT,TATC	200116	PASS	AB=0.513661,0.483342;ABP=12.2064,16.6833;AC=135,53;AF=0.718085,0.281915;AN=188;AO=7533,2748;CIGAR=1X3M,1X2M1X;DP=10313;DPB=10313;DPRA=0,1.1033;EPP=16360.7,5970.22;EPPR=18.2106;GTI=1;LEN=1,4;MEANALT=1.87234,2.2931;MQM=59.7101,28.5626;MQMR=58.1429;NS=94;NUMALT=2;ODDS=4.13342;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=269588,97568;QR=251;RO=7;RPL=0,0;RPP=16360.7,5970.22;RPPR=18.2106;RPR=7533,2748;RUN=1,1;SAF=7533,2748;SAP=16360.7,5970.22;SAR=0,0;SRF=7;SRP=18.2106;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:76:0,51,25:0:0:51,25:1828,862:-198.456,-49.3188,-33.9662,-149.424,0,-141.898	1/2:73:0,46,27:0:0:46,27:1644,946:-187.653,-53.5572,-39.7098,-134.387,0,-126.26	1/2:237:0,107,129:0:0:107,129:3820,4575:-567.571,-256.117,-223.906,-311.519,0,-272.686	1/2:213:0,142,71:0:0:142,71:5071,2497:-574.414,-160.953,-118.206,-413.77,0,-392.397	1/1:123:0,123,0:0:0:123,0:4418,0:-397.467,-37.0267,0,-397.467,-37.0267,-397.467	1/1:78:0,78,0:0:0:78,0:2778,0:-250.248,-23.4803,0,-250.248,-23.4803,-250.248	1/2:125:0,70,55:0:0:70,55:2493,1966:-329.879,-126.656,-105.584,-203.541,0,-186.984	1/2:236:0,111,125:0:0:111,125:3988,4415:-573.33,-248.022,-214.608,-325.617,0,-287.988	1/2:127:0,72,55:0:0:72,55:2580,1966:-319.464,-109.202,-87.5275,-210.561,0,-194.004	1/2:95:0,36,59:0:0:36,59:1296,2102:-241.36,-135.588,-124.751,-106.105,0,-88.3437	1/1:97:0,96,0:0:0:96,0:3426,0:-308.19,-28.8989,0,-308.19,-28.8989,-308.19	1/1:121:1,120,0:1:36:120,0:4300,0:-383.521,-32.8264,0,-383.822,-36.1236,-386.76	1/1:93:0,93,0:0:0:93,0:3332,0:-300.073,-27.9958,0,-300.073,-27.9958,-300.073	1/2:83:0,58,25:0:0:58,25:2070,899:-223.102,-54.2988,-36.839,-169.102,0,-161.576	1/1:65:0,65,0:0:0:65,0:2340,0:-210.847,-19.567,0,-210.847,-19.567,-210.847	1/1:78:0,78,0:0:0:78,0:2799,0:-252.144,-23.4803,0,-252.144,-23.4803,-252.144	1/2:49:0,27,22:0:0:27,22:968,776:-122.828,-43.8274,-35.6996,-79.301,0,-72.6784	1/1:50:0,50,0:0:0:50,0:1788,0:-161.191,-15.0515,0,-161.191,-15.0515,-161.191	1/2:39:0,18,21:0:0:18,21:648,751:-94.9985,-42.0765,-36.658,-53.2333,0,-46.9117	1/2:177:0,111,65:0:0:111,65:3960,2321:-471.811,-148.957,-115.543,-322.916,0,-303.349	1/2:206:0,103,102:0:0:103,102:3684,3613:-519.238,-218.8,-187.794,-300.472,0,-269.767	1/2:82:0,36,44:0:0:36,44:1282,1542:-206.806,-102.312,-91.4748,-104.613,0,-91.3672	1/2:143:0,90,53:0:0:90,53:3223,1878:-384.291,-121.411,-94.3186,-263.193,0,-247.239	1/2:73:0,39,34:0:0:39,34:1400,1205:-187.302,-73.0564,-61.3163,-114.557,0,-104.322	1/1:110:0,110,0:0:0:110,0:3941,0:-354.862,-33.1133,0,-354.862,-33.1133,-354.862	1/2:251:0,135,116:0:0:135,116:4834,4137:-672.596,-278.351,-237.712,-394.572,0,-359.652	1/1:361:0,361,0:0:0:361,0:12944,0:-1164.59,-108.672,0,-1164.59,-108.672,-1164.59	1/1:20:0,20,0:0:0:20,0:720,0:-65.1149,-6.0206,0,-65.1149,-6.0206,-65.1149	1/1:435:0,435,0:0:0:435,0:15576,0:-1401.52,-130.948,0,-1401.52,-130.948,-1401.52	1/2:123:0,77,46:0:0:77,46:2737,1651:-322.701,-99.634,-76.4547,-223.371,0,-209.524	1/1:128:0,127,1:0:0:127,1:4531,36:-407.653,-38.2308,0,-405.342,-35.6291,-405.041	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:36:0,36,0:0:0:36,0:1283,0:-115.768,-10.8371,0,-115.768,-10.8371,-115.768	1/1:4:0,4,0:0:0:4,0:136,0:-12.5736,-1.20412,0,-12.5736,-1.20412,-12.5736	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:44:0,42,0:0:0:42,0:1500,0:-135.005,-12.6433,0,-135.005,-12.6433,-135.005	1/2:179:0,93,85:0:0:93,85:3324,3045:-475.409,-204.414,-176.418,-271.023,0,-245.435	1/1:117:0,117,0:0:0:117,0:4208,0:-378.814,-35.2205,0,-378.814,-35.2205,-378.814	1/1:49:0,49,0:0:0:49,0:1760,0:-158.676,-14.7505,0,-158.676,-14.7505,-158.676	1/2:7:0,6,1:0:0:6,1:216,36:-19.9713,-2.25768,-0.451496,-17.9843,0,-17.6833	1/2:187:0,114,73:0:0:114,73:4092,2578:-489.655,-155.97,-121.653,-333.99,0,-312.015	1/1:58:0,58,0:0:0:58,0:2060,0:-185.659,-17.4597,0,-185.659,-17.4597,-185.659	1/1:298:1,296,1:1:35:296,1:10612,36:-951.377,-86.2619,0,-948.745,-86.1673,-951.292	1/1:62:0,61,1:0:0:61,1:2173,36:-195.471,-18.3628,0,-192.535,-15.0682,-192.234	1/2:45:0,21,24:0:0:21,24:752,848:-116.247,-54.8887,-48.5671,-61.6823,0,-54.4576	1/2:94:1,51,42:1:36:51,42:1832,1500:-246.77,-97.5888,-85.1751,-146.511,0,-136.805	1/2:117:0,56,59:0:0:56,59:2016,2108:-281.679,-117.136,-100.279,-164.594,0,-146.833	1/1:257:0,254,1:0:0:254,1:9067,36:-815.171,-76.4616,0,-812.86,-74.1301,-812.559	1/2:80:0,38,42:0:0:38,42:1360,1491:-206.766,-95.8288,-84.3896,-111.261,0,-98.6182	1/2:122:0,55,67:0:0:55,67:1953,2386:-312.386,-153.235,-136.678,-159.475,0,-139.306	1/2:83:0,53,30:0:0:53,30:1898,1072:-226.425,-71.6023,-55.6477,-155.142,0,-146.111	1/2:4:0,1,3:0:0:1,3:36,108:-10.1795,-7.22465,-6.92362,-3.29724,0,-2.39415	1/2:112:0,54,58:0:0:54,58:1935,2059:-272.399,-114.539,-98.2829,-158.168,0,-140.708	1/2:81:0,50,30:0:0:50,30:1783,1055:-215.526,-70.1444,-55.0929,-145.417,0,-136.386	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:140:0,53,87:0:0:53,87:1904,3079:-341.979,-186.631,-170.676,-155.674,0,-129.484	1/1:64:0,64,0:0:0:64,0:2288,0:-206.182,-19.2659,0,-206.182,-19.2659,-206.182	1/2:7:0,3,3:0:0:3,3:108,108:-16.2081,-7.36897,-6.46588,-8.87784,0,-7.97475	1/2:9:0,5,4:0:0:5,4:180,143:-24.7868,-10.0691,-8.56395,-15.0469,0,-13.8428	1/1:171:0,170,0:0:0:170,0:6071,0:-546.191,-51.1751,0,-546.191,-51.1751,-546.191	1/2:96:0,42,53:0:0:42,53:1508,1874:-242.251,-119.215,-106.571,-123.006,0,-107.052	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:208:0,208,0:0:0:208,0:7451,0:-670.572,-62.6142,0,-670.572,-62.6142,-670.572	1/2:164:0,66,97:0:0:66,97:2356,3448:-413.756,-221.66,-201.792,-192.095,0,-162.895	1/2:58:0,22,36:0:0:22,36:788,1281:-140.992,-76.699,-70.0764,-64.6175,0,-53.7804	1/1:97:0,97,0:0:0:97,0:3492,0:-314.482,-29.1999,0,-314.482,-29.1999,-314.482	1/2:136:0,59,77:0:0:59,77:2116,2700:-347.197,-174.579,-156.818,-172.944,0,-149.765	1/2:318:0,85,233:0:0:85,233:3025,8281:-778.962,-532.451,-506.863,-246.849,0,-176.709	1/2:57:0,29,27:0:0:29,27:1040,972:-142.837,-57.9715,-49.2416,-84.9263,0,-76.7985	1/1:49:0,49,0:0:0:49,0:1760,0:-158.605,-14.7505,0,-158.605,-14.7505,-158.605	1/2:48:0,24,24:0:0:24,24:851,863:-126.598,-57.239,-50.0143,-69.6847,0,-62.46	1/2:36:0,26,9:0:0:26,9:932,322:-96.5439,-20.4774,-12.6506,-76.0912,0,-73.382	1/2:153:0,76,76:0:0:76,76:2710,2698:-370.737,-150.267,-127.389,-220.436,0,-197.558	1/2:100:0,44,56:0:0:44,56:1580,2007:-240.977,-112.069,-98.8237,-129.222,0,-112.364	1/2:197:0,125,72:0:0:125,72:4452,2576:-518.364,-155.456,-117.828,-363.211,0,-341.536	1/1:201:0,200,0:0:0:200,0:7171,0:-645.104,-60.206,0,-645.104,-60.206,-645.104	1/1:119:3,116,0:3:108:116,0:4156,0:-363.98,-25.7474,0,-364.883,-34.9195,-373.696	1/1:182:1,179,2:1:36:179,2:6413,68:-573.606,-50.9407,0,-569.954,-50.0001,-572.261	1/2:13:0,7,6:0:0:7,6:248,210:-32.4281,-12.1714,-10.0642,-20.557,0,-18.7508	1/2:151:0,84,67:0:0:84,67:3008,2370:-388.209,-143.007,-117.72,-245.512,0,-225.343	1/1:142:0,142,0:0:0:142,0:5074,0:-456.795,-42.7463,0,-456.795,-42.7463,-456.795	1/1:202:0,202,0:0:0:202,0:7210,0:-648.941,-60.8081,0,-648.941,-60.8081,-648.941	1/2:41:0,20,21:0:0:20,21:720,744:-106.88,-48.0958,-42.0752,-59.1082,0,-52.7865	1/2:78:0,42,35:0:0:42,35:1508,1239:-202.618,-79.5677,-66.9245,-123.118,0,-112.582	1/2:42:0,22,20:0:0:22,20:788,713:-110.458,-46.1646,-39.5419,-64.6151,0,-58.5945	1/1:98:0,97,0:0:0:97,0:3438,0:-309.325,-29.1999,0,-309.325,-29.1999,-309.325	1/1:27:0,27,0:0:0:27,0:968,0:-87.4008,-8.12781,0,-87.4008,-8.12781,-87.4008	1/2:57:0,28,29:0:0:28,29:1008,1025:-140.054,-57.7578,-49.3289,-82.6042,0,-73.8743	1/2:71:0,44,27:0:0:44,27:1584,953:-182.675,-53.3708,-40.1255,-129.597,0,-121.469	1/1:101:0,101,0:0:0:101,0:3611,0:-325.163,-30.404,0,-325.163,-30.404,-325.163	1/2:127:0,65,62:0:0:65,62:2320,2183:-322.018,-132.851,-113.284,-189.48,0,-170.816	1/2:55:0,22,33:0:0:22,33:788,1179:-140.087,-75.8835,-69.2608,-64.5333,0,-54.5993	1/1:167:0,167,0:0:0:167,0:5980,0:-538.207,-50.272,0,-538.207,-50.272,-538.207	1/1:90:0,89,0:0:0:89,0:3200,0:-287.934,-26.7917,0,-287.934,-26.7917,-287.934
chr11	354277	.	ATCA	TTCA,TTCT	194953	PASS	AB=0.506798,0.489267;ABP=5.25403,8.60408;AC=135,53;AF=0.718085,0.281915;AN=188;AO=7336,2739;CIGAR=1X3M,1X2M1X;DP=10133;DPB=10133;DPRA=0,1.0443;EPP=15932.9,5950.67;EPPR=35.5824;GTI=1;LEN=1,4;MEANALT=2.01064,2.35714;MQM=59.7612,28.5476;MQMR=58.9333;NS=94;NUMALT=2;ODDS=5.67601;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=262179,96145;QR=460;RO=15;RPL=0,0;RPP=15932.9,5950.67;RPPR=35.5824;RPR=7336,2739;RUN=1,1;SAF=7336,2739;SAP=15932.9,5950.67;SAR=0,0;SRF=15;SRP=35.5824;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:75:0,50,25:0:0:50,25:1775,859:-193.686,-49.0147,-33.9632,-144.956,0,-137.431	1/2:69:0,43,26:0:0:43,26:1540,897:-176.809,-51.1571,-38.2128,-125.943,0,-118.116	1/2:236:0,107,128:0:0:107,128:3840,4519:-566.752,-253.49,-221.28,-313.215,0,-274.683	1/2:208:0,138,70:0:0:138,70:4919,2462:-559.656,-158.664,-117.122,-401.301,0,-380.229	1/1:118:0,117,0:0:0:117,0:4202,0:-377.79,-35.2205,0,-377.79,-35.2205,-377.79	1/1:75:0,75,0:0:0:75,0:2680,0:-241.42,-22.5773,0,-241.42,-22.5773,-241.42	1/2:123:0,67,55:0:0:67,55:2404,1941:-321.349,-125.255,-105.086,-196.055,0,-179.498	1/2:231:0,107,124:0:0:107,124:3796,4334:-554.025,-244.773,-212.563,-309.559,0,-272.232	1/2:124:1,68,55:1:36:68,55:2439,1942:-304.161,-105.492,-87.9616,-195.973,0,-182.353	1/2:96:0,37,59:0:0:37,59:1332,2099:-244.451,-135.741,-124.603,-109.042,0,-91.2812	1/1:97:0,97,0:0:0:97,0:3472,0:-312.669,-29.1999,0,-312.669,-29.1999,-312.669	1/1:123:1,120,0:1:30:120,0:4291,0:-383.288,-33.7449,0,-383.589,-36.1236,-385.987	1/1:90:0,90,0:0:0:90,0:3215,0:-289.547,-27.0927,0,-289.547,-27.0927,-289.547	1/2:81:0,55,25:0:0:55,25:1964,877:-213.651,-53.4767,-36.9201,-160.116,0,-152.591	1/1:64:0,64,0:0:0:64,0:2300,0:-207.249,-19.2659,0,-207.249,-19.2659,-207.249	1/1:78:0,78,0:0:0:78,0:2808,0:-252.954,-23.4803,0,-252.954,-23.4803,-252.954	1/2:49:0,27,22:0:0:27,22:955,790:-121.853,-44.0242,-35.8964,-78.128,0,-71.5053	1/1:51:0,50,0:0:0:50,0:1792,0:-161.302,-15.0515,0,-161.302,-15.0515,-161.302	1/2:40:0,19,21:0:0:19,21:662,740:-95.8113,-41.9319,-36.2124,-54.1828,0,-47.8612	1/2:173:0,108,65:0:0:108,65:3853,2289:-462.142,-148.009,-115.497,-314.446,0,-294.879	1/2:209:1,106,101:1:29:106,101:3780,3544:-520.789,-212.916,-183.315,-305.904,0,-277.807	1/2:83:0,36,47:0:0:36,47:1269,1637:-210.131,-106.786,-95.9485,-103.668,0,-89.5197	1/2:138:0,85,53:0:0:85,53:3047,1867:-369.65,-121.095,-95.5079,-248.869,0,-232.914	1/2:74:0,40,34:0:0:40,34:1425,1204:-189.202,-73.0078,-60.9666,-116.505,0,-106.27	1/1:111:0,111,0:0:0:111,0:3952,0:-355.855,-33.4143,0,-355.855,-33.4143,-355.855	1/2:246:0,131,114:0:0:131,114:4678,4024:-653.062,-271.645,-232.21,-381.553,0,-347.235	1/1:349:0,348,0:0:0:348,0:12447,0:-1119.69,-104.758,0,-1119.69,-104.758,-1119.69	1/1:19:0,19,0:0:0:19,0:684,0:-61.8765,-5.71957,0,-61.8765,-5.71957,-61.8765	1/1:425:0,424,0:0:0:424,0:15149,0:-1362.76,-127.637,0,-1362.76,-127.637,-1362.76	1/2:120:0,74,46:0:0:74,46:2648,1603:-314.219,-98.2557,-75.9795,-216.267,0,-202.42	1/1:127:1,125,1:1:32:125,1:4460,36:-398.296,-35.0356,0,-396.286,-35.3321,-398.563	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:36:0,35,0:0:0:35,0:1260,0:-113.346,-10.5361,0,-113.346,-10.5361,-113.346	1/1:4:0,4,0:0:0:4,0:144,0:-13.3052,-1.20412,0,-13.3052,-1.20412,-13.3052	1/1:15:0,15,0:0:0:15,0:524,0:-47.489,-4.51545,0,-47.489,-4.51545,-47.489	1/1:43:0,43,0:0:0:43,0:1536,0:-138.513,-12.9443,0,-138.513,-12.9443,-138.513	1/2:176:0,89,86:0:0:89,86:3196,3034:-466.109,-205.371,-178.579,-260.708,0,-234.819	1/1:113:1,111,0:1:24:111,0:3984,0:-356.209,-31.6151,0,-356.51,-33.4143,-358.368	1/1:46:0,45,0:0:0:45,0:1599,0:-143.832,-13.5464,0,-143.832,-13.5464,-143.832	1/2:7:0,6,1:0:0:6,1:216,36:-19.9713,-2.25768,-0.451496,-17.9843,0,-17.6833	1/2:183:0,110,72:0:0:110,72:3925,2532:-473.537,-153.542,-120.429,-320.044,0,-298.369	1/1:54:0,54,0:0:0:54,0:1932,0:-174.152,-16.2556,0,-174.152,-16.2556,-174.152	1/1:292:3,287,0:3:90:287,0:10276,0:-916.281,-79.1824,0,-917.184,-86.3956,-924.379	1/1:62:0,60,0:0:0:60,0:2144,0:-192.865,-18.0618,0,-192.865,-18.0618,-192.865	1/2:43:1,18,24:1:30:18,24:644,848:-104.456,-52.2147,-49.1953,-50.1712,0,-45.342	1/2:92:0,51,41:0:0:51,41:1823,1450:-246.534,-97.8603,-82.5077,-148.998,0,-136.656	1/2:116:0,56,60:0:0:56,60:1992,2099:-280.959,-118.575,-101.717,-162.69,0,-144.628	1/1:252:1,247,1:1:24:247,1:8794,36:-788.974,-72.51,0,-786.964,-72.0449,-788.521	1/2:78:0,36,42:0:0:36,42:1292,1478:-200.919,-95.4967,-84.6597,-105.747,0,-93.1034	1/2:126:0,59,67:0:0:59,67:2124,2362:-325.878,-152.551,-134.79,-173.653,0,-153.484	1/2:81:0,51,30:0:0:51,30:1828,1063:-220.528,-71.3992,-56.0467,-149.448,0,-140.417	1/2:4:0,1,3:0:0:1,3:36,108:-10.1795,-7.22465,-6.92362,-3.29724,0,-2.39415	1/2:113:0,55,58:0:0:55,58:1968,2038:-274.589,-114.065,-97.5079,-160.83,0,-143.371	1/2:79:0,49,30:0:0:49,30:1756,1055:-213.55,-70.2972,-55.5467,-143.571,0,-134.54	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:141:0,53,87:0:0:53,87:1900,3024:-339.986,-185.002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chr11	354291	.	AT	AC,CC	404663	PASS	AB=0.617034,0.380964;ABP=1012.95,1047.8;AC=134,54;AF=0.712766,0.287234;AN=188;AO=12688,3241;CIGAR=1M1X,2X;DP=15960;DPB=16680.5;DPRA=0,1.24903;EPP=27519.9,7040.75;EPPR=16.0391;GTI=4;LEN=1,2;MEANALT=1.87234,2.28333;MQM=58.3147,33.3261;MQMR=60;NS=94;NUMALT=2;ODDS=4.64007;PAIRED=0,0;PAIREDR=0;PAO=720.5,720.5;PQA=25688,25688;PQR=0;PRO=0;QA=452545,113218;QR=197;RO=6;RPL=7595,2742;RPP=1074.37,3373.82;RPPR=16.0391;RPR=5093,499;RUN=1,1;SAF=7599,2742;SAP=1081.23,3373.82;SAR=5089,499;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:78:0,53,25:0:0:53,25:1908,861:-203.655,-47.9672,-32.0126,-154.997,0,-147.471	1/2:77:0,50,27:0:0:50,27:1781,955:-193.692,-48.7014,-33.6499,-140.218,0,-132.09	1/2:243:0,114,129:0:0:114,129:4091,4509:-586.071,-252.586,-218.268,-332.367,0,-293.534	1/2:347:0,257,90:0:0:257,90:9191,3114:-962.288,-213.084,-135.719,-749.516,0,-722.423	1/1:218:0,218,0:0:0:218,0:7734,0:-694.896,-65.6245,0,-694.896,-65.6245,-694.896	1/1:77:0,77,0:0:0:77,0:2764,0:-242.657,-23.1793,0,-242.657,-23.1793,-242.657	1/2:209:0,143,66:0:0:143,66:5093,2280:-569.201,-154.207,-111.16,-415.306,0,-395.438	1/2:238:0,114,124:0:0:114,124:4070,4315:-573.713,-241.939,-207.621,-329.407,0,-292.079	1/2:128:0,73,55:0:0:73,55:2619,1955:-318.212,-104.647,-82.6719,-209.517,0,-192.961	1/2:171:0,99,72:0:0:99,72:3539,2536:-460.182,-171.978,-142.176,-288.527,0,-266.853	1/1:144:0,144,0:0:0:144,0:5105,0:-459.219,-43.3483,0,-459.219,-43.3483,-459.219	1/1:127:0,127,0:0:0:127,0:4551,0:-405.841,-38.2308,0,-405.841,-38.2308,-405.841	1/1:97:0,97,0:0:0:97,0:3441,0:-306.391,-29.1999,0,-306.391,-29.1999,-306.391	1/2:134:0,98,36:0:0:98,36:3488,1252:-367.497,-83.2465,-53.7456,-284.383,0,-273.546	1/1:140:0,138,0:0:0:138,0:4936,0:-443.349,-41.5421,0,-443.349,-41.5421,-443.349	1/1:129:0,129,0:0:0:129,0:4611,0:-414.09,-38.8329,0,-414.09,-38.8329,-414.09	1/2:53:0,29,24:0:0:29,24:1021,845:-130.658,-47.5572,-38.8273,-81.3042,0,-74.0795	1/1:53:0,53,0:0:0:53,0:1904,0:-167.916,-15.9546,0,-167.916,-15.9546,-167.916	1/2:41:0,20,21:0:0:20,21:696,754:-97.9616,-41.3608,-35.3402,-56.1781,0,-49.8565	1/2:301:0,223,78:0:0:223,78:7949,2732:-831.937,-184.684,-117.554,-647.565,0,-624.085	1/2:318:0,201,117:0:0:201,117:7168,4110:-844.008,-260.13,-199.623,-583.591,0,-548.37	1/2:116:0,65,51:0:0:65,51:2325,1782:-308.205,-118.658,-99.0913,-189.867,0,-174.515	1/2:223:0,158,65:0:0:158,65:5634,2250:-611.818,-152.931,-105.368,-459.2,0,-439.633	1/2:164:0,116,47:0:0:116,47:4133,1677:-447.762,-110.977,-76.0575,-336.661,0,-322.513	1/1:147:0,147,0:0:0:147,0:5280,0:-474.916,-44.2514,0,-474.916,-44.2514,-474.916	1/2:437:0,293,143:0:0:293,143:10440,5017:-1202.2,-352.026,-263.825,-850.135,0,-807.087	1/1:571:0,570,1:0:0:570,1:20323,25:-1826.36,-171.587,0,-1824.41,-169.389,-1824.11	1/1:56:0,56,0:0:0:56,0:1971,0:-177.504,-16.8577,0,-177.504,-16.8577,-177.504	1/1:644:0,643,1:0:0:643,1:22947,25:-2063.38,-193.562,0,-2061.43,-191.364,-2061.13	1/2:294:0,233,60:0:0:233,60:8297,2103:-814.52,-138.702,-68.5622,-675.339,0,-657.277	1/1:448:0,446,1:0:0:446,1:15940,34:-1431.98,-134.259,0,-1429.71,-132.023,-1429.41	1/1:13:0,13,0:0:0:13,0:468,0:-42.4514,-3.91339,0,-42.4514,-3.91339,-42.4514	1/1:41:0,41,0:0:0:41,0:1472,0:-132.709,-12.3422,0,-132.709,-12.3422,-132.709	1/1:4:0,4,0:0:0:4,0:144,0:-13.3052,-1.20412,0,-13.3052,-1.20412,-13.3052	1/1:14:0,14,0:0:0:14,0:500,0:-45.1127,-4.21442,0,-45.1127,-4.21442,-45.1127	1/1:45:0,45,0:0:0:45,0:1599,0:-144.122,-13.5464,0,-144.122,-13.5464,-144.122	1/2:327:0,198,129:0:0:198,129:7046,4487:-897.771,-324.978,-265.374,-573.062,0,-534.229	1/1:193:0,193,0:0:0:193,0:6927,0:-622.657,-58.0988,0,-622.657,-58.0988,-622.657	1/1:55:0,55,0:0:0:55,0:1953,0:-173.107,-16.5567,0,-173.107,-16.5567,-173.107	1/2:8:0,7,1:0:0:7,1:248,36:-22.5461,-2.25768,-0.150466,-20.5566,0,-20.2556	1/2:270:0,191,79:0:0:191,79:6796,2758:-726.232,-172.533,-115.037,-553.761,0,-529.979	1/1:71:0,71,0:0:0:71,0:2527,0:-227.539,-21.3731,0,-227.539,-21.3731,-227.539	1/1:478:1,477,0:1:25:477,0:17039,0:-1529.62,-141.392,0,-1529.92,-143.591,-1531.87	1/1:188:0,188,0:0:0:188,0:6690,0:-601.568,-56.5936,0,-601.568,-56.5936,-601.568	1/2:80:0,54,25:0:0:54,25:1900,877:-211.71,-57.1173,-40.8617,-154.544,0,-147.018	1/2:149:0,99,49:0:0:99,49:3544,1703:-408.786,-120.068,-90.2657,-288.692,0,-273.941	1/2:118:0,58,60:0:0:58,60:2051,2082:-281.373,-114.32,-96.8601,-163.955,0,-145.893	1/1:393:0,391,1:0:0:391,1:13919,36:-1250.93,-117.703,0,-1248.62,-115.395,-1248.31	1/2:142:0,86,53:0:0:86,53:3071,1858:-376.518,-126.479,-100.591,-250.033,0,-234.079	1/2:206:0,125,81:0:0:125,81:4433,2825:-550.407,-190.244,-152.616,-360.48,0,-336.097	1/2:198:0,149,49:0:0:149,49:5241,1713:-550.98,-124.695,-79.8416,-426.609,0,-411.859	1/2:13:0,6,7:0:0:6,7:216,250:-36.5798,-18.97,-17.1638,-17.9553,0,-15.8481	1/2:115:0,56,59:0:0:56,59:2016,2009:-278.401,-113.9,-97.0419,-162.406,0,-144.645	1/2:111:0,77,34:0:0:77,34:2748,1222:-306.673,-82.8328,-59.6535,-224.16,0,-213.925	1/1:7:0,7,0:0:0:7,0:252,0:-22.5469,-2.10721,0,-22.5469,-2.10721,-2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chr11	364392	.	ACT	ATT,AT	118853	PASS	AB=0.679608,0.318434;ABP=861.823,880.646;AC=134,52;AF=0.72043,0.27957;AN=186;AO=4758,986;CIGAR=1M1X1M,1M1D1M;DP=5756;DPB=5428.33;DPRA=0,1.05211;EPP=10334.9,2144.08;EPPR=0;GTI=10;LEN=1,1;MEANALT=1.74194,2.0678;MQM=45.6354,59.6349;MQMR=0;NS=93;NUMALT=2;ODDS=2674.6;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=169172,34394;QR=0;RO=0;RPL=4758,986;RPP=10334.9,2144.08;RPPR=0;RPR=0,0;RUN=1,1;SAF=4758,986;SAP=10334.9,2144.08;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,11,13:0:0:11,13:387,456:-68.5954,-37.4552,-34.1439,-31.4894,0,-27.576	1/2:92:0,69,23:0:0:69,23:2470,795:-263.258,-64.9431,-44.172,-198.662,0,-191.739	1/2:43:0,28,15:0:0:28,15:995,518:-122.283,-42.373,-33.9442,-80.257,0,-75.7415	1/2:101:0,79,22:0:0:79,22:2816,773:-290.468,-63.2668,-39.4855,-227.553,0,-220.93	1/1:74:0,74,0:0:0:74,0:2639,0:-234.059,-22.2762,0,-234.059,-22.2762,-234.059	1/1:40:0,40,0:0:0:40,0:1406,0:-124.3,-12.0412,0,-124.3,-12.0412,-124.3	1/2:53:0,36,17:0:0:36,17:1291,604:-153.748,-49.5731,-38.736,-104.53,0,-99.4122	1/2:135:0,82,53:0:0:82,53:2909,1859:-384.058,-151.634,-126.95,-232.774,0,-216.819	1/2:92:0,74,18:0:0:74,18:2629,632:-262.89,-51.5974,-29.3212,-211.642,0,-206.224	1/2:62:0,43,19:0:0:43,19:1540,680:-180.237,-55.5813,-42.6371,-125.012,0,-119.292	1/1:14:0,13,1:0:0:13,1:464,32:-41.493,-3.91339,0,-39.0246,-1.13369,-38.7236	1/1:19:0,18,1:0:0:18,1:648,36:-57.6792,-5.41854,0,-54.9323,-2.33197,-54.6313	1/1:34:0,32,2:0:0:32,2:1135,72:-101.053,-9.63296,0,-95.5584,-3.79858,-94.9563	1/2:13:0,10,3:0:0:10,3:338,108:-36.2075,-9.17208,-6.16178,-27.3893,0,-26.4862	1/1:26:0,26,0:0:0:26,0:930,0:-82.9517,-7.82678,0,-82.9517,-7.82678,-82.9517	1/1:14:0,14,0:0:0:14,0:496,0:-44.1844,-4.21442,0,-44.1844,-4.21442,-44.1844	1/2:15:0,9,6:0:0:9,6:320,201:-42.4059,-16.6109,-13.9016,-26.1367,0,-24.3305	1/1:20:0,20,0:0:0:20,0:707,0:-63.2965,-6.0206,0,-63.2965,-6.0206,-63.2965	1/2:5:0,3,2:0:0:3,2:104,64:-13.8579,-5.47663,-4.57354,-8.71051,0,-8.10845	1/2:125:0,105,18:0:0:105,18:3742,627:-352.384,-51.0648,-19.4567,-301.397,0,-295.979	1/2:87:0,53,34:0:0:53,34:1869,1193:-247.092,-97.4382,-81.4836,-150.003,0,-139.768	1/2:54:0,19,35:0:0:19,35:676,1230:-154.314,-100.466,-94.7468,-54.1968,0,-43.6607	1/2:93:0,60,30:0:0:60,30:2137,1060:-258.776,-86.4211,-68.3593,-172.447,0,-163.416	1/2:53:0,34,19:0:0:34,19:1202,657:-149.865,-53.7309,-43.4959,-96.4801,0,-90.7605	1/1:57:0,57,0:0:0:57,0:2019,0:-178.673,-17.1587,0,-178.673,-17.1587,-178.673	1/2:325:0,217,108:0:0:217,108:7672,3725:-913.776,-302.945,-237.621,-611.177,0,-578.666	1/1:127:0,127,0:0:0:127,0:4521,0:-400.528,-38.2308,0,-400.528,-38.2308,-400.528	1/1:12:0,11,0:0:0:11,0:396,0:-35.1692,-3.31133,0,-35.1692,-3.31133,-35.1692	1/1:210:0,210,0:0:0:210,0:7511,0:-663.242,-63.2163,0,-663.242,-63.2163,-663.242	1/2:103:0,78,25:0:0:78,25:2790,892:-297.124,-73.0739,-49.5936,-224.406,0,-216.88	1/1:104:0,104,0:0:0:104,0:3730,0:-333.018,-31.3071,0,-333.018,-31.3071,-333.018	1/1:12:0,12,0:0:0:12,0:432,0:-38.6788,-3.61236,0,-38.6788,-3.61236,-38.6788	1/1:17:0,17,0:0:0:17,0:600,0:-53.6423,-5.11751,0,-53.6423,-5.11751,-53.6423	1/1:6:0,5,0:0:0:5,0:180,0:-16.0808,-1.50515,0,-16.0808,-1.50515,-16.0808	1/1:2:0,2,0:0:0:2,0:63,0:-5.87076,-0.60206,0,-5.87076,-0.60206,-5.87076	1/1:6:0,6,0:0:0:6,0:209,0:-18.4981,-1.80618,0,-18.4981,-1.80618,-18.4981	1/2:49:0,30,19:0:0:30,19:1061,676:-140.029,-55.4484,-46.4175,-84.9327,0,-79.2132	1/1:186:0,186,0:0:0:186,0:6611,0:-585.07,-55.9916,0,-585.07,-55.9916,-585.07	1/1:8:0,8,0:0:0:8,0:284,0:-25.6352,-2.40824,0,-25.6352,-2.40824,-25.6352	.:.:.:.:.:.:.:.	1/2:66:0,47,19:0:0:47,19:1680,664:-189.187,-54.3649,-40.2165,-135.172,0,-129.452	1/1:2:0,2,0:0:0:2,0:72,0:-6.74218,-0.60206,0,-6.74218,-0.60206,-6.74218	1/1:134:0,134,0:0:0:134,0:4763,0:-421.924,-40.338,0,-421.924,-40.338,-421.924	1/1:20:0,20,0:0:0:20,0:716,0:-64.3363,-6.0206,0,-64.3363,-6.0206,-64.3363	1/2:13:0,11,2:0:0:11,2:388,68:-37.1401,-5.85565,-2.54432,-31.6258,0,-31.0238	1/2:56:0,36,20:0:0:36,20:1254,716:-158.313,-58.7471,-47.91,-99.9177,0,-93.8971	1/2:108:0,67,41:0:0:67,41:2395,1428:-308.851,-116.473,-96.3045,-192.728,0,-180.385	1/1:150:0,148,2:0:0:148,2:5239,68:-466.25,-44.5524,0,-461.068,-39.049,-460.466	1/2:76:0,55,21:0:0:55,21:1958,710:-216.082,-57.8905,-41.3338,-158.534,0,-152.212	1/2:88:0,78,10:0:0:78,10:2754,360:-252.002,-29.734,-6.25366,-222.627,0,-219.617	1/2:92:0,68,24:0:0:68,24:2427,848:-263.064,-69.4149,-48.9449,-194.002,0,-186.777	1/1:7:0,7,0:0:0:7,0:237,0:-21.5221,-2.10721,0,-21.5221,-2.10721,-21.5221	1/2:70:0,38,32:0:0:38,32:1351,1123:-200.14,-91.5539,-80.1148,-108.937,0,-99.3039	1/2:56:0,47,9:0:0:47,9:1688,324:-161.795,-26.7966,-12.6482,-135.357,0,-132.648	1/1:24:0,24,0:0:0:24,0:845,0:-75.3147,-7.22472,0,-75.3147,-7.22472,-75.3147	1/2:99:0,87,11:0:0:87,11:3096,388:-279.249,-31.6964,-5.50677,-247.655,0,-244.344	1/1:42:0,41,0:0:0:41,0:1449,0:-129.589,-12.3422,0,-129.589,-12.3422,-129.589	1/2:5:0,2,3:0:0:2,3:72,104:-14.5862,-8.79971,-8.19765,-6.13794,0,-5.23485	1/2:20:0,15,5:0:0:15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chr11	364514	.	T	G	100196	PASS	AB=0.673671;ABP=850.781;AC=135;AF=0.718085;AN=188;AO=5031;CIGAR=1X;DP=6093;DPB=6093;DPRA=0;EPP=10901.6;EPPR=2300.44;GTI=8;LEN=1;MEANALT=1;MQM=42.186;MQMR=55.0301;NS=94;NUMALT=1;ODDS=1.12901;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180226;QR=37959;RO=1062;RPL=3;RPP=10901.6;RPPR=2300.44;RPR=5028;RUN=1;SAF=0;SAP=10927.7;SAR=5031;SRF=0;SRP=2309.11;SRR=1062;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:9,34:9:324:34:1224:-96.4275,0,-15.9231	0/1:64:16,48:16:576:48:1724:-134.36,0,-32.9044	0/1:137:60,77:60:2156:77:2750:-202.752,0,-152.932	0/1:132:44,88:44:1584:88:3164:-228.869,0,-102.403	1/1:36:0,36:0:0:36:1296:-115.521,-10.8371,0	1/1:20:0,20:0:0:20:720:-64.5593,-6.0206,0	0/1:80:26,54:26:936:54:1944:-143.094,0,-60.3114	0/1:65:22,43:22:792:43:1544:-118.482,0,-50.3917	0/1:59:10,49:10:356:49:1751:-137.198,0,-14.6205	0/1:30:5,25:5:180:25:885:-67.1398,0,-7.48964	1/1:17:0,17:0:0:17:612:-51.0677,-5.11751,0	1/1:31:0,31:0:0:31:1107:-99.0839,-9.33193,0	1/1:31:0,31:0:0:31:1116:-99.8707,-9.33193,0	0/1:27:9,18:9:324:18:633:-48.682,0,-21.378	1/1:18:0,18:0:0:18:648:-56.0363,-5.41854,0	1/1:14:0,14:0:0:14:495:-44.5083,-4.21442,0	0/1:13:6,7:6:216:7:248:-18.5546,0,-15.3787	1/1:8:0,8:0:0:8:288:-25.5703,-2.40824,0	0/1:5:1,4:1:36:4:144:-11.6921,0,-2.09312	0/1:102:37,65:37:1302:65:2332:-169.089,0,-84.6034	0/1:87:18,69:18:633:69:2484:-194.52,0,-30.1598	0/1:86:44,42:44:1584:42:1504:-102.039,0,-116.372	0/1:98:40,58:40:1425:58:2080:-143.557,0,-98.6835	1/1:23:0,23:0:0:23:824:-73.8458,-6.92369,0	1/1:108:0,108:0:0:108:3861:-340.462,-32.5112,0	0/1:191:32,159:32:1152:159:5704:-429.352,0,-46.0942	1/1:208:0,208:0:0:208:7464:-663.386,-62.6142,0	1/1:12:0,12:0:0:12:432:-38.8783,-3.61236,0	1/1:277:0,277:0:0:277:9912:-841.805,-83.3853,0	0/1:125:40,85:40:1421:85:3056:-234.295,0,-89.4217	1/1:82:0,82:0:0:82:2928:-247.878,-24.6845,0	1/1:7:0,7:0:0:7:252:-22.8276,-2.10721,0	1/1:19:0,19:0:0:19:684:-60.8854,-5.71957,0	1/1:6:0,6:0:0:6:216:-19.6175,-1.80618,0	1/1:15:0,15:0:0:15:536:-47.2349,-4.51545,0	1/1:16:0,16:0:0:16:572:-51.316,-4.81648,0	0/1:49:22,27:22:792:27:972:-67.2205,0,-56.422	1/1:141:0,141:0:0:141:5072:-450.614,-42.4452,0	1/1:15:0,15:0:0:15:540:-48.5086,-4.51545,0	0/1:5:1,4:1:36:4:144:-11.6921,0,-2.09312	0/1:103:50,53:50:1800:53:1872:-135.887,0,-131.106	1/1:15:0,15:0:0:15:540:-48.5086,-4.51545,0	1/1:194:1,193:1:36:193:6904:-609.523,-55.3453,0	1/1:8:0,8:0:0:8:288:-24.9923,-2.40824,0	0/1:14:4,10:4:144:10:360:-26.7256,0,-9.07778	0/1:73:26,47:26:936:47:1688:-121.81,0,-62.354	0/1:64:24,40:24:860:40:1440:-109.263,0,-58.4251	1/1:198:2,196:2:72:196:7005:-591.188,-53.6759,0	0/1:114:31,83:31:1093:83:2984:-219.151,0,-63.8596	0/1:63:13,50:13:453:50:1787:-134.037,0,-22.0723	0/1:79:14,65:14:485:65:2340:-176.618,0,-20.0491	0/1:9:4,5:4:144:5:180:-13.0677,0,-10.4301	0/1:104:42,62:42:1497:62:2228:-166.068,0,-103.649	0/1:66:26,40:26:902:40:1440:-103.283,0,-60.506	1/1:7:0,7:0:0:7:252:-22.8276,-2.10721,0	0/1:67:19,48:19:684:48:1716:-130.842,0,-41.7213	1/1:48:0,48:0:0:48:1720:-146.119,-14.4494,0	0/1:6:1,5:1:36:5:180:-13.7253,0,-1.78305	0/1:19:5,14:5:180:14:495:-36.3127,0,-10.7992	1/1:91:0,91:0:0:91:3236:-287.174,-27.3937,0	0/1:35:13,22:13:468:22:788:-57.4584,0,-31.8043	0/1:3:1,2:1:36:2:72:-4.8655,0,-2.68833	1/1:166:0,166:0:0:166:5940:-505.584,-49.971,0	0/1:153:53,100:53:1889:100:3588:-259.967,0,-123.607	0/1:35:10,25:10:360:25:900:-70.0739,0,-22.2083	1/1:62:0,62:0:0:62:2208:-188.107,-18.6639,0	0/1:138:41,97:41:1461:97:3476:-254.709,0,-89.9773	0/1:117:46,71:46:1641:71:2556:-179.034,0,-112.312	0/1:7:4,3:4:144:3:108:-7.77503,0,-11.2064	1/1:65:0,65:0:0:65:2336:-207.015,-19.567,0	0/1:24:6,18:6:216:18:648:-47.2557,0,-12.516	0/1:21:3,18:3:104:18:648:-48.5784,0,-3.3718	0/1:102:29,73:29:1044:73:2606:-201.374,0,-63.5674	0/1:45:5,40:5:180:40:1440:-115.216,0,-3.00333	0/1:132:38,94:38:1368:94:3372:-259.096,0,-83.2693	1/1:187:1,186:1:36:186:6661:-563.951,-53.644,0	1/1:86:0,86:0:0:86:3064:-271.108,-25.8886,0	1/1:55:0,55:0:0:55:1972:-174.458,-16.5567,0	0/1:21:7,14:7:248:14:504:-38.9769,0,-16.3379	0/1:88:47,41:47:1688:41:1472:-103.871,0,-125.642	1/1:54:0,54:0:0:54:1940:-172.437,-16.2556,0	1/1:311:1,310:1:36:310:11116:-943.007,-90.0221,0	0/1:29:12,17:12:432:17:612:-43.3372,0,-30.4229	0/1:28:11,17:11:396:17:603:-43.6017,0,-27.4916	0/1:10:4,6:4:144:6:203:-14.8545,0,-10.278	1/1:45:0,45:0:0:45:1616:-138.289,-13.5464,0	1/1:7:0,7:0:0:7:248:-22.4799,-2.10721,0	0/1:26:9,17:9:324:17:612:-47.0241,0,-21.6782	0/1:15:5,10:5:180:10:360:-26.3905,0,-12.0366	1/1:7:0,7:0:0:7:248:-22.4799,-2.10721,0	0/1:20:6,14:6:216:14:504:-38.6506,0,-13.7699	0/1:8:5,3:5:165:3:108:-7.31151,0,-12.7399	1/1:115:1,114:1:36:114:4052:-340.679,-31.0823,0	1/1:32:0,32:0:0:32:1128:-96.1179,-9.63296,0
chr11	407625	.	T	A	36291.9	PASS	AB=0.519026;ABP=15.4045;AC=53;AF=0.281915;AN=188;AO=2048;CIGAR=1X;DP=6480;DPB=6480;DPRA=1.1865;EPP=4201.86;EPPR=9104.2;GTI=2;LEN=1;MEANALT=1.05455;MQM=60;MQMR=59.9831;NS=94;NUMALT=1;ODDS=0.36121;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73414;QR=158495;RO=4428;RPL=29;RPP=4201.86;RPPR=9104.2;RPR=2019;RUN=1;SAF=2048;SAP=4450.19;SAR=0;SRF=4428;SRP=9618.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:18,15:18:644:15:532:-38.2791,0,-48.3566	0/1:80:42,38:42:1503:38:1364:-98.9783,0,-111.481	0/1:135:62,73:62:2220:73:2620:-195.408,0,-159.425	0/1:127:53,74:53:1900:74:2660:-201.415,0,-133.047	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:35:34,1:34:1211:1:36:0,-6.93777,-105.697	0/1:88:51,37:51:1836:37:1324:-92.9715,0,-139.03	0/1:91:50,41:50:1787:41:1472:-105.382,0,-133.718	0/1:51:28,23:28:1008:23:828:-59.4916,0,-75.6838	0/1:67:29,38:29:1040:38:1360:-102.532,0,-73.7454	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.657	0/0:97:96,0:96:3444:0:0:0,-28.8989,-309.813	0/0:81:81,0:81:2903:0:0:0,-24.3834,-261.505	0/1:77:28,49:28:999:49:1754:-134.965,0,-67.0452	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:79:77,1:77:2768:1:24:0,-21.3804,-246.901	0/1:34:12,22:12:428:22:788:-61.0098,0,-28.6238	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:106:55,51:55:1968:51:1828:-132.892,0,-145.486	0/1:120:53,67:53:1878:67:2412:-181.212,0,-133.174	0/1:62:17,45:17:612:45:1616:-127.066,0,-36.7496	0/1:53:27,26:27:960:26:932:-68.2443,0,-70.7617	0/1:30:14,16:14:500:16:574:-42.9634,0,-36.3053	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.639	0/1:137:63,74:63:2259:74:2652:-197.685,0,-162.224	0/0:187:187,0:187:6684:0:0:0,-56.2926,-601.638	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/0:121:121,0:121:4340:0:0:0,-36.4246,-390.774	0/1:152:75,77:75:2688:77:2760:-202.885,0,-196.408	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:175:90,85:90:3240:85:3052:-222.229,0,-239.14	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/0:61:61,0:61:2162:0:0:0,-18.3628,-194.843	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:40:14,26:14:504:26:936:-72.5183,0,-33.6569	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.949	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:50:24,26:24:860:26:932:-69.1474,0,-62.6703	0/1:76:33,43:33:1180:43:1544:-116.375,0,-83.6298	0/1:73:42,31:42:1508:31:1101:-77.424,0,-114.039	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/1:69:34,35:34:1224:35:1252:-92.214,0,-89.696	0/1:54:31,23:31:1112:23:828:-58.5885,0,-84.1357	0/1:184:90,94:90:3232:94:3374:-248.486,0,-235.712	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:94:54,40:54:1940:40:1424:-100.16,0,-146.579	0/1:49:23,26:23:828:26:928:-69.0878,0,-60.0936	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:107:50,57:50:1788:57:2033:-151.031,0,-128.992	0/1:9:8,1:8:280:1:36:-0.889005,0,-22.83	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:120:57,62:57:2044:62:2228:-164.601,0,-148.049	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.034	0/1:150:82,67:82:2944:67:2382:-169.424,0,-219.98	0/1:49:22,27:22:788:27:964:-72.3264,0,-56.4943	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:138:62,76:62:2228:76:2736:-204.94,0,-159.228	0/1:110:48,62:48:1711:62:2223:-167.22,0,-121.162	0/1:37:16,21:16:568:21:756:-57.2291,0,-40.3138	0/0:56:56,0:56:1981:0:0:0,-16.8577,-178.563	0/1:54:28,26:28:995:26:936:-68.3038,0,-73.6084	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/1:114:52,62:52:1842:62:2228:-166.466,0,-131.471	0/1:61:26,35:26:924:35:1244:-93.9013,0,-65.1148	0/1:93:53,40:53:1908:40:1436:-101.542,0,-144.002	0/0:98:98,0:98:3498:0:0:0,-29.5009,-315.03	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.151	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:54:23,31:23:828:31:1116:-84.4961,0,-58.5885	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.786	0/0:157:157,0:157:5628:0:0:0,-47.2617,-506.64	0/1:55:32,23:32:1143:23:824:-57.9267,0,-86.622	0/1:80:37,43:37:1332:43:1548:-115.531,0,-96.1	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9624	0/0:122:122,0:122:4373:0:0:0,-36.7257,-393.741	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:53:27,26:27:968:26:936:-68.6049,0,-71.4828	0/1:57:25,32:25:900:32:1144:-86.1108,0,-64.1623	0/0:55:55,0:55:1944:0:0:0,-16.5566,-175.234	0/1:104:59,45:59:2091:45:1605:-113.431,0,-157.15	0/1:71:19,52:19:675:52:1872:-147.386,0,-39.7038	0/0:110:110,0:110:3932:0:0:0,-33.1133,-354.071	0/0:94:94,0:94:3371:0:0:0,-28.2968,-303.605
chr11	467472	.	G	A	43830.2	PASS	AB=0.532376;ABP=46.7386;AC=55;AF=0.292553;AN=188;AO=2564;CIGAR=1X;DP=7884;DPB=7884;DPRA=1.20457;EPP=5570.67;EPPR=11533.5;GTI=2;LEN=1;MEANALT=1.05172;MQM=59.4977;MQMR=59.9268;NS=94;NUMALT=1;ODDS=0.773256;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91489;QR=189990;RO=5314;RPL=0;RPP=5570.67;RPPR=11542.2;RPR=2564;RUN=1;SAF=2564;SAP=5570.67;SAR=0;SRF=5313;SRP=11533.5;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:23,25:23:828:25:900:-66.853,0,-60.3947	0/1:99:52,47:52:1845:47:1662:-119.955,0,-136.248	0/1:115:46,69:46:1648:69:2476:-188.457,0,-113.99	0/1:184:71,113:71:2552:113:4030:-307.416,0,-174.54	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:138:60,78:60:2137:78:2774:-208.35,0,-151.054	0/1:180:79,100:79:2836:100:3543:-264.753,0,-201.234	0/1:88:43,45:43:1525:45:1590:-116.841,0,-111.05	0/1:66:32,34:32:1144:34:1201:-88.5211,0,-83.4015	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/1:55:30,25:30:1072:25:896:-64.2655,0,-80.2276	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.319	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:47:21,26:21:752:26:936:-70.3771,0,-53.8402	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.536	0/1:34:20,14:20:720:14:489:-34.103,0,-54.8938	0/1:179:87,92:87:3094:92:3293:-242.682,0,-224.801	0/1:93:35,58:35:1248:58:2072:-158.429,0,-84.6067	0/1:152:27,125:27:949:125:4462:-355.981,0,-39.9662	0/1:71:23,48:23:828:48:1720:-133.388,0,-53.4686	0/1:89:49,40:49:1756:40:1432:-102.373,0,-131.514	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.66	0/1:314:153,161:153:5454:161:5747:-422.772,0,-395.527	0/0:173:173,0:173:6205:0:0:0,-52.0782,-558.543	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:298:298,0:298:10655:0:0:0,-89.7069,-958.856	0/1:115:65,50:65:2317:50:1796:-126.939,0,-174.17	0/0:104:104,0:104:3713:0:0:0,-31.3071,-334.366	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7858	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7177	0/1:146:72,74:72:2584:74:2649:-194.395,0,-188.858	0/0:198:197,0:197:7031:0:0:0,-59.3029,-632.485	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:127:71,56:71:2541:56:1997:-141.544,0,-190.708	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:95:94,1:94:3357:1:36:0,-24.9996,-298.556	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:36:21,15:21:741:15:536:-37.7377,0,-56.1745	0/1:156:63,93:63:2264:93:3314:-251.403,0,-157.062	0/1:74:45,29:45:1597:29:1019:-69.0852,0,-121.739	0/0:214:214,0:214:7677:0:0:0,-64.4204,-690.958	0/1:101:41,59:41:1476:59:2071:-155.943,0,-102.82	0/1:106:55,51:55:1965:51:1821:-132.26,0,-145.214	0/1:171:83,88:83:2950:88:3148:-232.056,0,-214.255	0/1:11:9,2:9:320:2:72:-3.52539,0,-25.831	0/1:130:62,68:62:2205:68:2392:-176.354,0,-159.569	0/1:30:16,14:16:561:14:504:-36.6663,0,-41.7862	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:108:50,58:50:1781:58:2080:-154.615,0,-128.06	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:15:4,11:4:140:11:396:-31.4673,0,-8.42913	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:108:56,52:56:2012:52:1864:-135.389,0,-148.842	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:152:151,1:151:5394:1:36:0,-42.1583,-481.963	0/1:230:102,128:102:3649:128:4592:-344.186,0,-259.373	0/1:53:27,26:27:949:26:913:-66.48,0,-69.7672	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/1:139:70,69:70:2512:69:2484:-181.183,0,-184.489	0/1:92:22,70:22:788:70:2508:-198.268,0,-43.55	0/1:12:5,7:5:180:7:237:-18.0467,0,-12.9397	0/0:83:83,0:83:2973:0:0:0,-24.9855,-267.801	0/1:84:41,43:41:1476:43:1548:-114.326,0,-107.85	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:133:73,59:73:2567:59:2116:-150.51,0,-191.173	0/1:46:31,15:31:1112:15:540:-35.0715,0,-86.544	0/1:145:76,69:76:2702:69:2469:-178.779,0,-199.772	0/0:104:103,0:103:3689:0:0:0,-31.0061,-331.846	0/0:119:119,0:119:4265:0:0:0,-35.8226,-383.83	0/0:52:51,1:51:1828:1:36:0,-12.0553,-161.199	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:44:13,31:13:464:31:1089:-85.0664,0,-28.8522	0/0:112:112,0:112:4001:0:0:0,-33.7154,-360.278	0/0:205:205,0:205:7334:0:0:0,-61.7111,-660.103	0/1:88:43,45:43:1544:45:1601:-117.856,0,-112.762	0/1:34:17,17:17:612:17:612:-45.1784,0,-45.1784	0/1:49:23,26:23:813:26:932:-69.4393,0,-58.7356	0/0:98:97,1:97:3483:1:36:0,-25.9027,-310.059	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.298	0/1:65:28,37:28:1008:37:1332:-100.598,0,-71.4694	0/1:44:26,18:26:917:18:629:-43.6708,0,-69.5993	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:72:45,27:45:1598:27:972:-66.114,0,-122.435	0/1:55:17,38:17:612:38:1349:-105.145,0,-38.8568	0/0:106:105,0:105:3735:0:0:0,-31.6081,-335.974	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.089
chr11	467804	.	G	A	39818.5	PASS	AB=0.458123;ABP=84.6688;AC=54;AF=0.287234;AN=188;AO=2461;CIGAR=1X;DP=9061;DPB=9061;DPRA=1.21424;EPP=5338.32;EPPR=14317.4;GTI=1;LEN=1;MEANALT=1.08621;MQM=59.9919;MQMR=59.9973;NS=94;NUMALT=1;ODDS=0.863033;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87651;QR=233626;RO=6592;RPL=1;RPP=5338.32;RPPR=14308.7;RPR=2460;RUN=1;SAF=0;SAP=5347;SAR=2461;SRF=1;SRP=14308.7;SRR=6591;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:28,28:28:996:28:1004:-73.8182,0,-73.0972	0/1:74:41,33:41:1459:33:1146:-81.1652,0,-109.329	0/1:294:168,126:168:5924:126:4506:-317.204,0,-444.769	0/1:175:101,74:101:3611:74:2629:-184.176,0,-272.515	0/0:121:120,1:120:4239:1:36:0,-32.8264,-378.087	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:84:42,42:42:1504:42:1471:-107.395,0,-110.368	0/1:127:84,43:84:2975:43:1540:-100.662,0,-229.751	0/1:51:37,14:37:1300:14:491:-29.1686,0,-101.946	0/1:62:41,21:41:1457:21:756:-49.7034,0,-112.76	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:68:68,0:68:2406:0:0:0,-20.47,-216.796	0/0:34:34,0:34:1179:0:0:0,-10.235,-106.411	0/1:78:35,43:35:1223:43:1526:-114.151,0,-86.8925	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.911	0/0:62:62,0:62:2196:0:0:0,-18.6639,-197.903	0/1:43:22,21:22:769:21:752:-55.062,0,-56.5843	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/1:24:8,16:8:284:16:567:-44.136,0,-18.6786	0/1:204:111,93:111:3919:93:3290:-234.907,0,-291.495	0/1:156:94,62:94:3322:62:2208:-152.022,0,-252.237	0/1:196:74,121:74:2615:121:4314:-329.375,0,-176.536	0/1:94:56,38:56:1989:38:1364:-94.7639,0,-150.986	0/1:40:21,19:21:748:19:672:-48.7656,0,-55.6041	0/0:76:76,0:76:2689:0:0:0,-22.8783,-242.254	0/1:229:145,83:145:5165:83:2947:-196.468,0,-395.997	0/0:233:232,0:232:8217:0:0:0,-69.839,-739.188	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:263:263,0:263:9323:0:0:0,-79.1709,-839.041	0/1:144:79,65:79:2795:65:2304:-164.27,0,-208.441	0/0:117:116,1:116:4106:1:36:0,-31.6222,-366.128	0/0:14:14,0:14:487:0:0:0,-4.21442,-44.1592	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:25:25,0:25:879:0:0:0,-7.52575,-79.4268	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:126:66,60:66:2329:60:2125:-153.587,0,-171.939	0/0:163:163,0:163:5703:0:0:0,-49.0679,-513.389	0/0:31:31,0:31:1099:0:0:0,-9.33193,-99.2195	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:139:69,70:69:2454:70:2498:-183.228,0,-179.271	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:186:186,0:186:6555:0:0:0,-55.9916,-590.04	0/0:24:24,0:24:842:0:0:0,-7.22472,-76.0971	0/1:33:11,22:11:388:22:773:-59.9555,0,-25.3234	0/1:70:56,14:56:1993:14:500:-24.2641,0,-158.57	0/1:163:93,70:93:3300:70:2484:-174.744,0,-248.148	0/0:214:212,2:212:7584:2:72:0,-57.5837,-675.763	0/1:96:55,41:55:1907:41:1436:-100.634,0,-143.003	0/1:208:119,89:119:4222:89:3176:-223.448,0,-317.549	0/1:79:62,17:62:2204:17:608:-31.2707,0,-174.841	0/1:20:8,12:8:288:12:418:-31.9304,0,-20.2468	0/1:234:130,104:130:4593:104:3711:-263.75,0,-343.096	0/1:141:80,60:80:2826:60:2156:-151.803,0,-212.073	0/0:16:16,0:16:559:0:0:0,-4.81648,-50.6376	0/1:137:69,68:69:2451:68:2421:-176.903,0,-179.604	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:34:22,12:22:783:12:432:-28.9862,0,-60.5579	0/1:14:4,10:4:144:10:356:-28.1668,0,-9.0992	0/0:112:112,0:112:3958:0:0:0,-33.7154,-356.413	0/1:94:52,42:52:1798:42:1499:-106.907,0,-133.801	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/0:183:182,1:182:6455:1:36:0,-51.4902,-577.443	0/1:203:118,85:118:4209:85:3025:-211.372,0,-317.881	0/1:56:34,22:34:1193:22:784:-54.0262,0,-90.8155	0/0:116:116,0:116:4149:0:0:0,-34.9195,-373.592	0/1:168:97,71:97:3420:71:2551:-179.267,0,-257.443	0/1:261:92,169:92:3246:169:6025:-463.784,0,-213.792	0/1:47:22,25:22:792:25:900:-67.1726,0,-57.4573	0/0:64:64,0:64:2220:0:0:0,-19.2659,-200.059	0/1:32:14,18:14:500:18:640:-48.2392,0,-35.7032	0/1:24:16,7:16:568:7:252:-15.7454,0,-44.1686	0/1:116:71,45:71:2535:45:1620:-111.17,0,-193.481	0/1:26:10,16:10:360:16:576:-44.3482,0,-24.9175	0/1:137:77,60:77:2740:60:2145:-152.075,0,-205.6	0/0:206:206,0:206:7330:0:0:0,-62.0122,-659.749	0/0:219:218,0:218:7726:0:0:0,-65.6245,-695.018	0/0:120:120,0:120:4296:0:0:0,-36.1236,-386.817	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:140:70,69:70:2508:69:2468:-180.171,0,-183.769	0/0:169:168,0:168:5960:0:0:0,-50.573,-536.149	0/0:167:167,0:167:5937:0:0:0,-50.272,-534.439	0/1:31:12,19:12:432:19:672:-51.4749,0,-29.8893	0/1:62:33,29:33:1175:29:1015:-72.9955,0,-87.3931	0/1:32:12,20:12:419:20:704:-54.0516,0,-28.4097	0/0:101:101,0:101:3586:0:0:0,-30.404,-322.948	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:59:27,32:27:956:32:1148:-85.8691,0,-68.595	0/1:54:25,29:25:892:29:1040:-77.6587,0,-64.3441	0/0:63:63,0:63:2227:0:0:0,-18.9649,-200.694	0/1:121:55,66:55:1950:66:2359:-176.143,0,-139.35	0/1:38:19,19:19:680:19:675:-49.6378,0,-50.09	0/0:180:180,0:180:6372:0:0:0,-54.1854,-573.574	0/0:56:56,0:56:1970:0:0:0,-16.8577,-177.574
chr11	470710	.	AGA	GGA,GGT	162349	PASS	AB=0.681636,0.315103;ABP=1145.24,1186.63;AC=138,48;AF=0.741935,0.258065;AN=186;AO=6419,1263;CIGAR=1X2M,1X1M1X;DP=7731;DPB=7731.33;DPRA=0,1.15405;EPP=13941.7,2745.58;EPPR=11.6962;GTI=8;LEN=1,3;MEANALT=1.88172,2.25;MQM=50.6732,59.8203;MQMR=60;NS=93;NUMALT=2;ODDS=0.38502;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,27;PQR=0;PRO=0;QA=229099,44584;QR=144;RO=4;RPL=0,0;RPP=13941.7,2745.58;RPPR=11.6962;RPR=6419,1263;RUN=1,1;SAF=6419,1263;SAP=13941.7,2745.58;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:30:0,24,6:0:0:24,6:860,212:-87.3385,-17.6188,-10.3941,-70.0735,0,-68.2673	1/2:107:0,95,12:0:0:95,12:3408,419:-310.521,-34.4305,-5.83268,-276.44,0,-272.828	1/2:89:0,77,11:0:0:77,11:2744,392:-254.417,-31.9457,-8.76641,-222.471,0,-219.16	1/2:128:0,102,26:0:0:102,26:3648,908:-370.501,-74.2066,-43.5016,-296.645,0,-288.819	1/1:26:0,26,0:0:0:26,0:930,0:-82.9232,-7.82678,0,-82.9232,-7.82678,-82.9232	1/1:63:0,63,0:0:0:63,0:2241,0:-200.452,-18.9649,0,-200.452,-18.9649,-200.452	1/2:76:0,50,26:0:0:50,26:1788,916:-220.43,-74.9279,-59.8764,-145.856,0,-138.029	1/2:65:0,45,20:0:0:45,20:1606,702:-186.875,-57.4815,-43.9351,-129.745,0,-123.724	1/2:68:0,56,12:0:0:56,12:2012,432:-197.738,-35.6088,-18.7512,-162.488,0,-158.876	1/2:74:0,51,23:0:0:51,23:1828,805:-214.56,-65.8447,-50.4922,-149.068,0,-142.144	1/1:47:0,47,0:0:0:47,0:1684,0:-151.581,-14.1484,0,-151.581,-14.1484,-151.581	1/1:77:0,77,0:0:0:77,0:2734,0:-244.774,-23.1793,0,-244.774,-23.1793,-244.774	1/1:99:1,97,0:1:36:97,0:3447,0:-304.631,-26.2594,0,-304.932,-29.1999,-307.869	1/2:48:0,28,20:0:0:28,20:980,703:-136.113,-57.5718,-49.1429,-78.8904,0,-72.8698	1/1:91:0,91,0:0:0:91,0:3251,0:-292.199,-27.3937,0,-292.199,-27.3937,-292.199	1/1:68:0,67,0:0:0:67,0:2392,0:-211.499,-20.169,0,-211.499,-20.169,-211.499	1/2:58:0,32,26:0:0:32,26:1148,903:-166.472,-73.7453,-64.1123,-93.0774,0,-85.2506	1/1:57:0,56,0:0:0:56,0:2012,0:-179.721,-16.8577,0,-179.721,-16.8577,-179.721	1/2:28:0,17,10:0:0:17,10:597,345:-76.326,-28.0177,-22.9002,-48.3019,0,-45.2916	1/2:169:0,135,34:0:0:135,34:4816,1197:-488.86,-97.7999,-57.1609,-391.413,0,-381.178	1/2:76:0,62,14:0:0:62,14:2195,484:-215.65,-39.6732,-21.0093,-176.323,0,-172.109	1/2:44:0,36,8:0:0:36,8:1292,288:-128.973,-23.8592,-13.0221,-105.473,0,-103.065	1/2:82:0,59,21:0:0:59,21:2105,720:-229.641,-58.5407,-40.7799,-171.192,0,-164.871	1/2:92:1,63,28:1:36:63,28:2254,988:-258.192,-77.5066,-61.4794,-178.042,0,-172.551	1/1:107:0,107,0:0:0:107,0:3801,0:-336.378,-32.2102,0,-336.378,-32.2102,-336.378	1/2:194:0,160,34:0:0:160,34:5698,1189:-560.619,-97.0754,-48.9106,-463.895,0,-453.66	1/1:292:0,289,1:0:0:289,1:10325,36:-914.261,-86.9977,0,-911.324,-84.0478,-911.023	1/1:41:0,40,0:0:0:40,0:1431,0:-126.975,-12.0412,0,-126.975,-12.0412,-126.975	1/1:315:0,313,0:0:0:313,0:11201,0:-1006.12,-94.2224,0,-1006.12,-94.2224,-1006.12	1/2:119:0,91,27:0:0:91,27:3233,949:-336.254,-77.2372,-49.8434,-259.013,0,-250.885	1/1:137:0,135,0:0:0:135,0:4828,0:-433.258,-40.6391,0,-433.258,-40.6391,-433.258	1/1:14:0,14,0:0:0:14,0:504,0:-45.3366,-4.21442,0,-45.3366,-4.21442,-45.3366	1/1:14:0,14,0:0:0:14,0:485,0:-43.507,-4.21442,0,-43.507,-4.21442,-43.507	1/1:10:0,10,0:0:0:10,0:345,0:-31.346,-3.0103,0,-31.346,-3.0103,-31.346	1/1:11:0,11,0:0:0:11,0:388,0:-34.9314,-3.31133,0,-34.9314,-3.31133,-34.9314	1/1:9:0,9,0:0:0:9,0:320,0:-29.0381,-2.70927,0,-29.0381,-2.70927,-29.0381	1/2:242:0,129,113:0:0:129,113:4621,3967:-699.456,-323.19,-284.357,-376.62,0,-342.603	1/1:190:0,188,0:0:0:188,0:6704,0:-594.618,-56.5936,0,-594.618,-56.5936,-594.618	1/1:43:1,42,0:1:36:42,0:1489,0:-129.636,-9.34602,0,-129.937,-12.6433,-132.875	.:.:.:.:.:.:.:.	1/2:105:0,87,18:0:0:87,18:3099,645:-301.106,-52.9625,-26.7728,-248.5,0,-243.082	1/1:20:0,20,0:0:0:20,0:716,0:-63.8974,-6.0206,0,-63.8974,-6.0206,-63.8974	1/1:163:1,162,0:1:36:162,0:5754,0:-506.594,-45.4696,0,-506.895,-48.7669,-509.833	1/1:86:0,84,0:0:0:84,0:3008,0:-269.696,-25.2865,0,-269.696,-25.2865,-269.696	1/2:78:0,37,41:0:0:37,41:1319,1449:-225.596,-118.363,-107.225,-107.587,0,-95.2452	1/2:40:0,25,15:0:0:25,15:888,523:-115.111,-42.8628,-35.337,-72.5991,0,-68.0837	1/2:104:0,85,19:0:0:85,19:3048,662:-301.113,-54.1817,-28.5942,-247.281,0,-241.561	1/1:173:0,172,0:0:0:172,0:6130,0:-549.624,-51.7772,0,-549.624,-51.7772,-549.624	1/2:111:0,91,20:0:0:91,20:3243,703:-320.65,-57.5712,-30.1775,-263.43,0,-257.41	1/2:74:0,55,19:0:0:55,19:1972,664:-214.515,-54.1347,-37.578,-160.731,0,-155.011	1/2:114:0,88,25:0:0:88,25:3152,882:-328.495,-71.917,-45.4263,-256.678,0,-249.152	1/1:6:0,6,0:0:0:6,0:216,0:-19.7671,-1.80618,0,-19.7671,-1.80618,-19.7671	1/2:79:0,58,20:0:0:58,20:2052,720:-224.643,-58.7543,-41.2945,-165.892,0,-159.872	1/1:12:0,11,1:0:0:11,1:392,33:-35.2198,-3.31133,0,-32.5537,-0.313225,-32.2527	1/1:10:0,10,0:0:0:10,0:356,0:-32.2676,-3.0103,0,-32.2676,-3.0103,-32.2676	1/2:80:0,58,22:0:0:58,22:2059,784:-229.589,-64.259,-46.7992,-165.685,0,-159.062	1/1:53:0,53,0:0:0:53,0:1873,0:-168.535,-15.9546,0,-168.535,-15.9546,-168.535	1/2:6:0,5,1:0:0:5,1:176,34:-17.4154,-3.09788,-1.59273,-14.6593,0,-14.3583	1/2:15:0,13,2:0:0:13,2:464,72:-44.0302,-6.23466,-2.32127,-38.1549,0,-37.5528	1/1:57:0,57,0:0:0:57,0:2048,0:-182.069,-17.1587,0,-182.069,-17.1587,-182.069	1/2:85:0,37,48:0:0:37,48:1320,1700:-245.971,-138.834,-127.696,-107.491,0,-93.0418	1/1:4:0,4,0:0:0:4,0:144,0:-13.2947,-1.20412,0,-13.2947,-1.20412,-13.2947	1/1:152:0,152,0:0:0:152,0:5421,0:-486.88,-45.7566,0,-486.88,-45.7566,-486.88	1/2:140:0,118,22:0:0:118,22:4198,788:-405.951,-64.6223,-29.1008,-341.686,0,-335.064	1/2:35:0,26,9:0:0:26,9:936,324:-102.026,-26.7536,-18.9268,-75.6308,0,-72.9216	1/1:72:0,72,0:0:0:72,0:2576,0:-231.432,-21.6742,0,-231.432,-21.6742,-231.432	1/2:64:0,41,23:0:0:41,23:1453,812:-184.221,-66.4776,-54.1354,-118.096,0,-111.172	1/2:59:0,33,26:0:0:33,26:1180,934:-172.617,-76.5525,-66.6185,-96.423,0,-88.5962	1/2:10:0,6,4:0:0:6,4:216,144:-29.4715,-12.1095,-10.3033,-17.7199,0,-16.5158	1/1:113:0,110,0:0:0:110,0:3936,0:-351.779,-33.1133,0,-351.779,-33.1133,-351.779	1/2:96:0,31,64:0:0:31,64:1112,2283:-276.42,-186.108,-176.776,-90.3106,0,-71.0446	1/1:4:0,4,0:0:0:4,0:144,0:-13.2947,-1.20412,0,-13.2947,-1.20412,-13.2947	1/2:69:0,47,22:0:0:47,22:1684,781:-200.507,-63.9857,-49.8373,-136.877,0,-130.254	1/2:79:0,57,22:0:0:57,22:2031,779:-227.476,-63.8096,-46.6509,-164.019,0,-157.397	1/2:77:0,57,20:0:0:57,20:2029,693:-219.726,-56.6653,-39.5066,-163.408,0,-157.387	1/1:229:0,220,0:0:0:220,0:7845,0:-704.246,-66.2266,0,-704.246,-66.2266,-704.246	1/1:29:0,29,0:0:0:29,0:1036,0:-93.0593,-8.72987,0,-93.0593,-8.72987,-93.0593	1/1:92:0,92,0:0:0:92,0:3289,0:-294.618,-27.6948,0,-294.618,-27.6948,-294.618	1/1:17:0,17,0:0:0:17,0:606,0:-54.1792,-5.11751,0,-54.1792,-5.11751,-54.1792	1/2:87:0,74,13:0:0:74,13:2640,466:-250.36,-38.3653,-16.0891,-212.352,0,-208.439	1/1:124:0,123,0:0:0:123,0:4378,0:-391.456,-37.0267,0,-391.456,-37.0267,-391.456	1/1:163:0,162,0:0:0:162,0:5793,0:-519.041,-48.7669,0,-519.041,-48.7669,-519.041	1/2:101:0,40,61:0:0:40,61:1432,2169:-293.549,-177.114,-165.072,-116.792,0,-98.4293	1/2:93:0,47,43:0:0:47,43:1688,1527:-261.884,-124.421,-110.273,-137.463,0,-124.519	1/2:114:0,60,54:0:0:60,54:2133,1911:-329.156,-156.012,-137.95,-173.498,0,-157.243	1/1:190:0,189,1:0:0:189,1:6774,36:-607.659,-56.8947,0,-604.722,-53.5974,-604.421	1/1:45:0,44,0:0:0:44,0:1575,0:-140.938,-13.2453,0,-140.938,-13.2453,-140.938	1/2:87:0,42,44:0:0:42,44:1504,1554:-248.169,-126.65,-114.007,-121.62,0,-108.374	1/2:75:0,42,33:0:0:42,33:1508,1175:-217.815,-96.12,-83.4767,-122.051,0,-112.117	1/1:12:0,11,0:0:0:11,0:392,0:-34.8007,-3.31133,0,-34.8007,-3.31133,-34.8007	1/2:39:0,19,20:0:0:19,20:671,673:-108.491,-54.5812,-48.8616,-53.977,0,-47.9564	1/2:81:0,26,55:0:0:26,55:932,1969:-236.585,-160.929,-153.102,-76.0134,0,-59.4567	1/1:95:0,95,0:0:0:95,0:3392,0:-304.674,-28.5979,0,-304.674,-28.5979,-304.674	1/1:113:0,107,4:0:0:107,4:3821,140:-342.986,-32.2102,0,-331.595,-20.8246,-330.391
chr11	479881	.	A	G	93839.3	PASS	AB=0.43599;ABP=150.345;AC=128;AF=0.703297;AN=182;AO=4682;CIGAR=1X;DP=7027;DPB=7027;DPRA=31.5596;EPP=10169.8;EPPR=5090.77;GTI=1;LEN=1;MEANALT=1.02247;MQM=59.9842;MQMR=59.9834;NS=91;NUMALT=1;ODDS=0.951123;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165910;QR=83771;RO=2343;RPL=4681;RPP=10161.2;RPPR=5073.41;RPR=1;RUN=1;SAF=4681;SAP=10161.2;SAR=1;SRF=2341;SRP=5073.41;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:25,16:25:896:16:572:-39.4712,0,-68.6181	0/1:49:27,22:27:964:22:775:-55.3207,0,-72.3264	0/1:157:87,70:87:3116:70:2464:-174.752,0,-233.405	0/1:198:106,92:106:3795:92:3226:-230.957,0,-282.143	1/1:42:0,42:0:0:42:1489:-134.303,-12.6433,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:76:42,34:42:1508:34:1198:-85.2457,0,-113.136	0/1:86:53,33:53:1900:33:1163:-79.0875,0,-145.389	0/1:84:48,36:48:1724:36:1264:-88.776,0,-130.159	0/1:47:35,12:35:1260:12:432:-25.0728,0,-99.5571	1/1:36:0,36:0:0:36:1269:-114.512,-10.8371,0	1/1:101:0,101:0:0:101:3553:-319.912,-30.404,0	1/1:96:0,96:0:0:96:3406:-306.756,-28.8989,0	0/1:46:28,18:28:1004:18:631:-43.2683,0,-76.8285	1/1:74:0,74:0:0:74:2630:-236.947,-22.2762,0	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	0/1:25:11,14:11:392:14:504:-38.1723,0,-28.0943	1/1:31:0,31:0:0:31:1107:-99.9402,-9.33193,0	0/1:24:10,14:10:356:14:500:-38.1115,0,-25.1565	0/1:116:66,50:66:2349:50:1778:-125.382,0,-176.748	0/1:90:49,41:49:1756:41:1472:-105.683,0,-131.231	0/1:143:105,38:105:3730:38:1344:-78.2101,0,-292.852	0/1:100:53,47:53:1892:47:1684:-121.744,0,-140.455	0/1:48:26,22:26:936:22:780:-56.0736,0,-70.11	1/1:76:0,76:0:0:76:2719:-244.953,-22.8783,0	0/1:168:82,86:82:2909:86:3061:-225.146,0,-211.469	1/1:170:0,169:0:0:169:5952:-535.438,-50.8741,0	1/1:40:0,40:0:0:40:1418:-127.916,-12.0412,0	1/1:172:0,172:0:0:172:6075:-546.856,-51.7772,0	0/1:75:35,40:35:1256:40:1424:-105.88,0,-90.768	1/1:60:0,59:0:0:59:2091:-188.1,-17.7608,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	0/1:187:100,87:100:3574:87:3099:-222.845,0,-265.574	1/1:176:0,176:0:0:176:6247:-562.329,-52.9813,0	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:92:56,36:56:2008:36:1288:-88.5288,0,-153.299	1/1:39:0,39:0:0:39:1388:-125.219,-11.7402,0	1/1:99:0,99:0:0:99:3502:-315.39,-29.802,0	1/1:61:0,61:0:0:61:2158:-194.486,-18.3628,0	0/1:66:36,30:36:1283:30:1043:-74.3081,0,-95.9046	0/1:108:71,37:71:2531:37:1316:-86.2306,0,-195.53	0/1:96:54,42:54:1932:42:1486:-105.135,0,-145.258	1/1:140:1,139:1:36:139:4915:-438.9,-38.5459,0	0/1:59:40,19:40:1432:19:676:-43.4072,0,-111.417	0/1:97:42,55:42:1500:55:1934:-145.133,0,-106.095	0/1:83:41,42:41:1460:42:1500:-110.309,0,-106.711	.:.:.:.:.:.:.:.	0/1:121:67,54:67:2396:54:1906:-135.392,0,-179.473	0/1:37:20,17:20:720:17:599:-43.1,0,-53.9907	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:214:119,95:119:4276:95:3360:-238.197,0,-320.596	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:107:58,49:58:2080:49:1747:-125.303,0,-155.26	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:171:0,171:0:0:171:6066:-546.045,-51.4761,0	0/1:128:80,48:80:2867:48:1705:-115.201,0,-219.034	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	1/1:112:0,112:0:0:112:4004:-360.55,-33.7154,0	0/1:116:67,49:67:2395:49:1740:-121.965,0,-180.887	0/1:108:78,30:78:2779:30:1040:-61.3953,0,-217.84	0/1:15:10,5:10:356:5:180:-12.0366,0,-27.8658	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:38:20,18:20:716:18:638:-46.3086,0,-53.3286	0/1:21:8,13:8:284:13:459:-35.3225,0,-19.5817	0/1:89:50,39:50:1776:39:1370:-96.8054,0,-133.331	0/1:62:27,35:27:948:35:1228:-92.1572,0,-66.9708	0/1:79:50,29:50:1796:29:1040:-70.133,0,-138.141	1/1:122:0,122:0:0:122:4333:-390.146,-36.7257,0	1/1:83:0,83:0:0:83:2941:-264.924,-24.9855,0	1/1:76:0,76:0:0:76:2708:-243.965,-22.8783,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:106:63,43:63:2260:43:1519:-105.093,0,-171.753	1/1:89:1,88:1:36:88:3083:-274.1,-23.1934,0	1/1:112:0,112:0:0:112:3946:-355.321,-33.7154,0	0/1:66:37,29:37:1324:29:1009:-71.2507,0,-99.5941	0/1:74:40,34:40:1424:34:1207:-86.6591,0,-106.181	0/1:61:31,30:31:1095:30:1060:-77.3484,0,-80.4963	1/1:146:1,145:1:36:145:5139:-459.057,-40.3521,0	1/1:33:0,33:0:0:33:1157:-104.434,-9.93399,0	0/1:75:39,36:39:1396:36:1292:-94.0065,0,-103.362	0/1:99:58,41:58:2088:41:1458:-101.713,0,-158.388	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:48:18,30:18:640:30:1064:-81.6222,0,-43.4799	0/1:83:55,28:55:1972:28:1008:-66.0509,0,-152.769	1/1:119:0,119:0:0:119:4210:-379.046,-35.8226,0	1/1:117:0,117:0:0:117:4122:-371.167,-35.2205,0
chr11	522563	.	GTTCC	GTTCG,ATTCG	183360	PASS	AB=0.468411,0.526784;ABP=51.7129,38.0232;AC=134,52;AF=0.72043,0.27957;AN=186;AO=5758,2965;CIGAR=4M1X,1X3M1X;DP=8764;DPB=8763.4;DPRA=0,1.45261;EPP=12497.7,6441.43;EPPR=0;GTI=5;LEN=1,5;MEANALT=2.01075,2.44643;MQM=59.9899,59.9609;MQMR=0;NS=93;NUMALT=2;ODDS=0.130525;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=206070,104933;QR=0;RO=0;RPL=5758,2965;RPP=12506.3,6441.43;RPPR=0;RPR=0,0;RUN=1,1;SAF=1,0;SAP=12497.7,6441.43;SAR=5757,2965;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:62:0,30,32:0:0:30,32:1080,1134:-180.861,-92.7357,-83.7048,-88.4823,0,-78.8494	1/2:143:0,69,73:0:0:69,73:2464,2604:-413.181,-212.294,-191.523,-200.903,0,-178.928	1/2:198:0,86,111:0:0:86,111:3088,3945:-573.416,-321.514,-295.626,-251.943,0,-218.528	1/2:199:0,84,114:0:0:84,114:2995,4027:-572.085,-327.945,-302.658,-244.136,0,-209.818	1/1:48:0,48,0:0:0:48,0:1724,0:-155.445,-14.4494,0,-155.445,-14.4494,-155.445	1/1:67:0,65,2:0:0:65,2:2340,71:-210.504,-19.567,0,-204.719,-13.427,-204.117	1/2:210:0,91,119:0:0:91,119:3252,4163:-604.186,-339.032,-311.638,-265.508,0,-229.685	1/2:116:0,54,62:0:0:54,62:1913,2218:-337.056,-181.222,-164.966,-156.19,0,-137.526	1/2:104:0,68,36:0:0:68,36:2444,1289:-304.863,-105.477,-85.007,-199.745,0,-188.907	1/2:111:0,60,51:0:0:60,51:2156,1825:-324.935,-149.048,-130.987,-176.245,0,-160.893	1/1:54:0,54,0:0:0:54,0:1936,0:-174.516,-16.2556,0,-174.516,-16.2556,-174.516	1/1:78:0,78,0:0:0:78,0:2774,0:-249.898,-23.4803,0,-249.898,-23.4803,-249.898	1/1:71:0,71,0:0:0:71,0:2548,0:-229.57,-21.3731,0,-229.57,-21.3731,-229.57	1/2:88:0,51,37:0:0:51,37:1824,1289:-253.907,-105.17,-89.8176,-149.089,0,-137.95	1/1:56:0,56,0:0:0:56,0:1993,0:-179.642,-16.8577,0,-179.642,-16.8577,-179.642	1/1:51:0,51,0:0:0:51,0:1816,0:-163.721,-15.3525,0,-163.721,-15.3525,-163.721	1/2:94:0,44,50:0:0:44,50:1576,1753:-271.532,-143,-129.755,-128.886,0,-113.835	1/1:58:0,58,0:0:0:58,0:2080,0:-187.47,-17.4597,0,-187.47,-17.4597,-187.47	1/2:47:0,23,24:0:0:23,24:819,851:-136.438,-69.6855,-62.7618,-67.1079,0,-59.8832	1/2:121:0,56,64:0:0:56,64:2008,2273:-348.985,-185.207,-168.349,-163.776,0,-144.51	1/2:155:0,81,73:0:0:81,73:2891,2590:-446.752,-211.065,-186.682,-235.732,0,-213.757	1/2:49:0,30,19:0:0:30,19:1052,676:-141.053,-55.4486,-46.4177,-85.9577,0,-80.2381	1/2:124:0,57,66:0:0:57,66:2044,2346:-357.967,-191.251,-174.092,-166.792,0,-146.924	1/2:138:0,60,78:0:0:60,78:2144,2778:-401.591,-226.782,-208.72,-175.166,0,-151.686	1/1:51:0,50,0:0:0:50,0:1792,0:-161.203,-15.0515,0,-161.203,-15.0515,-161.203	1/2:301:0,135,165:0:0:135,165:4831,5829:-868.75,-474.8,-434.161,-394.074,0,-344.404	1/1:205:0,205,0:0:0:205,0:7348,0:-661.365,-61.7112,0,-661.365,-61.7112,-661.365	1/1:48:0,48,0:0:0:48,0:1715,0:-154.635,-14.4494,0,-154.635,-14.4494,-154.635	1/1:149:0,149,0:0:0:149,0:5332,0:-480.014,-44.8535,0,-480.014,-44.8535,-480.014	1/2:144:0,70,73:0:0:70,73:2504,2576:-414.051,-209.865,-188.792,-204.289,0,-182.314	1/1:90:0,90,0:0:0:90,0:3219,0:-289.932,-27.0927,0,-289.932,-27.0927,-289.932	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:206:0,111,93:0:0:111,93:3963,3305:-592.447,-269.356,-235.941,-323.132,0,-295.136	1/1:110:0,110,0:0:0:110,0:3932,0:-354.073,-33.1133,0,-354.073,-33.1133,-354.073	1/1:71:0,71,0:0:0:71,0:2552,0:-229.93,-21.3731,0,-229.93,-21.3731,-229.93	.:.:.:.:.:.:.:.	1/2:194:0,97,97:0:0:97,97:3437,3421:-558.898,-278.906,-249.706,-280.345,0,-251.145	1/1:32:0,31,0:0:0:31,0:1108,0:-99.6712,-9.33193,0,-99.6712,-9.33193,-99.6712	1/1:75:0,74,0:0:0:74,0:2644,0:-237.847,-22.2762,0,-237.847,-22.2762,-237.847	1/1:96:0,93,0:0:0:93,0:3340,0:-300.492,-27.9958,0,-300.492,-27.9958,-300.492	1/2:84:0,37,47:0:0:37,47:1328,1644:-242.428,-134.098,-122.96,-108.684,0,-94.5357	1/2:49:0,23,26:0:0:23,26:824,917:-142.223,-75.0187,-68.095,-67.5596,0,-59.7328	1/2:106:0,55,50:0:0:55,50:1960,1761:-303.264,-143.498,-126.941,-159.896,0,-144.845	1/1:125:0,125,0:0:0:125,0:4477,0:-403.097,-37.6288,0,-403.097,-37.6288,-403.097	1/2:103:0,38,64:0:0:38,64:1364,2258:-295.152,-183.887,-172.448,-111.291,0,-92.025	1/2:143:0,64,77:0:0:64,77:2277,2745:-409.382,-223.812,-204.547,-185.623,0,-162.444	1/2:201:0,103,97:0:0:103,97:3688,3419:-579.278,-278.516,-247.51,-300.905,0,-271.705	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/2:126:0,42,84:0:0:42,84:1504,2988:-366.52,-243.865,-231.222,-123.011,0,-97.7248	1/2:57:0,30,27:0:0:30,27:1076,947:-165.183,-77.416,-68.3851,-88.121,0,-79.9932	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	1/2:141:0,69,71:0:0:69,71:2454,2507:-404.198,-204.209,-183.438,-200.042,0,-178.669	1/1:69:0,68,0:0:0:68,0:2440,0:-219.554,-20.47,0,-219.554,-20.47,-219.554	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:17:0,3,14:0:0:3,14:108,502:-50.1154,-41.3029,-40.3998,-9.17208,0,-4.95766	1/1:70:0,70,0:0:0:70,0:2500,0:-225.249,-21.0721,0,-225.249,-21.0721,-225.249	1/2:123:0,53,69:0:0:53,69:1898,2456:-355.02,-200.234,-184.279,-154.852,0,-134.081	1/2:8:0,1,7:0:0:1,7:36,250:-23.6772,-20.7395,-20.4384,-3.29724,0,-1.19003	1/1:191:0,187,0:0:0:187,0:6704,0:-603.148,-56.2926,0,-603.148,-56.2926,-603.148	1/2:174:0,70,100:0:0:70,100:2500,3568:-494.733,-290.908,-269.836,-203.864,0,-173.761	1/2:93:0,45,48:0:0:45,48:1601,1694:-268.743,-138.266,-124.719,-130.832,0,-116.382	1/1:73:0,73,0:0:0:73,0:2612,0:-235.328,-21.9752,0,-235.328,-21.9752,-235.328	1/2:141:0,67,74:0:0:67,74:2412,2601:-408.875,-212.064,-191.895,-197.167,0,-174.891	1/2:102:0,28,73:0:0:28,73:995,2596:-292.618,-211.553,-203.125,-81.0604,0,-59.0852	1/2:32:0,19,13:0:0:19,13:684,457:-93.3662,-37.5503,-31.8307,-56.1708,0,-52.2574	1/1:111:0,111,0:0:0:111,0:3961,0:-356.681,-33.4143,0,-356.681,-33.4143,-356.681	1/2:105:0,49,56:0:0:49,56:1757,1977:-304.654,-161.347,-146.596,-143.663,0,-126.805	1/2:26:0,17,9:0:0:17,9:600,324:-75.6509,-26.7966,-21.6791,-49.2117,0,-46.5024	1/2:82:0,40,41:0:0:40,41:1436,1439:-234.32,-117.178,-105.137,-117.224,0,-104.882	1/2:91:0,37,54:0:0:37,54:1320,1871:-259.952,-152.41,-141.272,-107.894,0,-91.6385	1/2:154:0,62,92:0:0:62,92:2210,3183:-439.15,-259.002,-240.338,-180.5,0,-152.805	1/1:162:0,161,1:0:0:161,1:5784,36:-520.312,-48.4658,0,-517.375,-45.1686,-517.074	1/1:76:0,76,0:0:0:76,0:2728,0:-245.763,-22.8783,0,-245.763,-22.8783,-245.763	1/1:127:0,126,1:0:0:126,1:4524,36:-406.966,-37.9298,0,-404.029,-34.6325,-403.728	1/2:18:0,7,11:0:0:7,11:252,394:-53.0529,-32.4902,-30.383,-20.9217,0,-17.6104	1/2:110:0,58,52:0:0:58,52:2076,1859:-321.23,-151.937,-134.477,-169.651,0,-153.997	1/1:62:0,62,0:0:0:62,0:2212,0:-199.345,-18.6639,0,-199.345,-18.6639,-199.345	1/1:209:0,207,0:0:0:207,0:7427,0:-668.122,-62.3132,0,-668.122,-62.3132,-668.122	1/2:109:0,64,44:0:0:64,44:2295,1579:-315.983,-128.797,-109.531,-187.185,0,-173.939	1/2:57:0,27,29:0:0:27,29:968,1030:-162.877,-83.9238,-75.796,-78.9498,0,-70.2199	1/2:79:0,41,38:0:0:41,38:1463,1342:-228.909,-109.641,-97.2984,-119.623,0,-108.184	1/1:135:0,135,0:0:0:135,0:4860,0:-437.55,-40.6391,0,-437.55,-40.6391,-437.55	1/1:49:0,48,1:0:0:48,1:1719,36:-154.635,-14.4494,0,-151.698,-11.1522,-151.397	1/2:81:0,42,39:0:0:42,39:1500,1388:-235.773,-113.478,-100.835,-122.651,0,-110.911	1/2:62:0,23,39:0:0:23,39:828,1398:-181.941,-114.379,-107.456,-67.9204,0,-56.1803	1/1:62:0,62,0:0:0:62,0:2220,0:-200.064,-18.6639,0,-200.064,-18.6639,-200.064	1/2:73:0,42,31:0:0:42,31:1503,1113:-213.712,-91.1498,-78.5065,-122.921,0,-113.589	1/2:63:0,17,44:0:0:17,44:599,1547:-174.754,-125.984,-120.867,-48.8286,0,-35.5833	1/1:50:0,50,0:0:0:50,0:1792,0:-161.562,-15.0515,0,-161.562,-15.0515,-161.562	1/1:109:0,108,0:0:0:108,0:3872,0:-348.315,-32.5112,0,-348.315,-32.5112,-348.315
chr11	538283	.	C	T	26787.9	PASS	AB=0.546399;ABP=55.2011;AC=54;AF=0.296703;AN=182;AO=1531;CIGAR=1X;DP=4471;DPB=4471;DPRA=1.24916;EPP=3241.24;EPPR=6257.52;GTI=2;LEN=1;MEANALT=1;MQM=59.9948;MQMR=59.9905;NS=91;NUMALT=1;ODDS=0.23907;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54828;QR=105315;RO=2940;RPL=10;RPP=3241.24;RPPR=6248.92;RPR=1521;RUN=1;SAF=0;SAP=3327.53;SAR=1531;SRF=1;SRP=6378.46;SRR=2939;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:9,19:9:324:19:676:-52.7392,0,-21.077	0/1:27:12,15:12:428:15:536:-40.447,0,-30.731	0/1:72:23,49:23:828:49:1752:-136.29,0,-53.17	0/1:123:58,65:58:2080:65:2321:-172.122,0,-150.444	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:40:23,17:23:828:17:608:-43.0108,0,-62.8029	0/1:60:37,23:37:1309:23:828:-56.7823,0,-100.048	0/1:99:34,65:34:1216:65:2329:-180.067,0,-79.9446	0/1:52:29,23:29:1035:23:828:-59.1906,0,-77.8095	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:56:56,0:56:1990:0:0:0,-16.8577,-179.373	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:28:7,21:7:252:21:751:-59.4871,0,-14.6001	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:11:3,8:3:104:8:288:-22.9561,0,-6.39148	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:72:28,44:28:1004:44:1580:-120.817,0,-69.0017	0/1:75:32,43:32:1144:43:1540:-116.316,0,-80.6923	0/1:52:20,32:20:716:32:1146:-87.7959,0,-49.1142	0/1:41:18,23:18:648:23:824:-62.1411,0,-46.3097	0/1:49:26,23:26:936:23:828:-60.0936,0,-69.809	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:183:81,102:81:2912:102:3656:-274.155,0,-207.226	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.876	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.223	0/1:58:29,29:29:1044:29:1040:-76.4546,0,-76.8151	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:143:75,68:75:2696:68:2444:-177.167,0,-199.346	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/1:57:28,29:28:1008:29:1040:-76.7557,0,-73.8776	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:32:18,14:18:644:14:496:-35.3413,0,-48.6576	0/1:52:20,32:20:712:32:1148:-87.9763,0,-48.7531	0/1:58:33,25:33:1184:25:888:-62.7774,0,-89.4086	0/0:74:72,2:72:2584:2:72:0,-15.4395,-225.972	0/1:62:32,30:32:1152:30:1080:-78.8494,0,-85.3263	0/1:58:24,34:24:864:34:1216:-92.2868,0,-60.6228	0/1:58:30,28:30:1080:28:1004:-73.2161,0,-80.0535	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:50:26,24:26:928:24:860:-62.6703,0,-68.7868	0/1:37:18,19:18:648:19:680:-50.3911,0,-47.5138	.:.:.:.:.:.:.:.	0/1:79:39,40:39:1396:40:1428:-105.036,0,-102.158	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/1:60:26,34:26:936:34:1224:-92.4052,0,-66.4977	.:.:.:.:.:.:.:.	0/0:187:187,0:187:6712:0:0:0,-56.2926,-604.153	0/1:106:50,56:50:1800:56:2004:-148.724,0,-130.373	0/1:37:17,20:17:608:20:712:-53.2685,0,-43.9139	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:91:42,49:42:1508:49:1757:-131.02,0,-108.621	0/1:92:25,67:25:896:67:2396:-188.202,0,-53.2656	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:30:19,11:19:684:11:392:-26.5892,0,-52.8594	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:91:47,44:47:1692:44:1570:-114.198,0,-125.173	0/1:40:23,17:23:828:17:604:-42.6494,0,-62.8029	0/1:48:14,34:14:504:34:1215:-95.2063,0,-31.2487	0/0:101:101,0:101:3604:0:0:0,-30.404,-324.567	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/0:51:49,2:49:1745:2:72:0,-8.51581,-150.496	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:73:22,51:22:792:51:1832:-143.186,0,-49.6305	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/1:44:24,20:24:849:20:720:-51.8835,0,-63.4825	0/1:40:18,22:18:648:22:784:-58.8427,0,-46.6107	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/0:73:73,0:73:2615:0:0:0,-21.9752,-235.597	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:57:18,39:18:648:39:1400:-109.14,0,-41.4932	0/1:54:25,29:25:891:29:1040:-77.6587,0,-64.2532	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:61:32,29:32:1133:29:1039:-75.4615,0,-83.9138	0/1:41:14,27:14:504:27:964:-74.7346,0,-33.3559	0/0:123:123,0:123:4393:0:0:0,-37.0267,-395.542	0/0:63:62,1:62:2215:1:36:0,-15.3666,-196.016
chr11	538377	.	GAT	AAC,AAT	227071	PASS	AB=0.493436,0.505105;ABP=5.57578,4.56226;AC=135,53;AF=0.718085,0.281915;AN=188;AO=7567,3466;CIGAR=1X1M1X,1X2M;DP=11047;DPB=11063.3;DPRA=0,1.2308;EPP=16434.5,7529.33;EPPR=5.18177;GTI=2;LEN=3,1;MEANALT=1.73404,2.16071;MQM=59.9922,59.9735;MQMR=60;NS=94;NUMALT=2;ODDS=0.120106;PAIRED=0,0;PAIREDR=0;PAO=24.5,24.5;PQA=527.5,527.5;PQR=0;PRO=0;QA=265948,120907;QR=36;RO=1;RPL=7567,3466;RPP=16434.5,7529.33;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=7567,3466;SAP=16434.5,7529.33;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:41:0,13,28:0:0:13,28:426,973:-113.858,-79.451,-75.5376,-34.7409,0,-26.3121	1/2:164:0,84,79:0:0:84,79:2946,2779:-466.038,-226.301,-201.015,-239.816,0,-216.035	1/2:107:0,57,50:0:0:57,50:2022,1716:-304.416,-139.671,-122.512,-165.094,0,-150.042	1/2:238:0,121,116:0:0:121,116:4279,4046:-677.506,-328.989,-292.564,-348.528,0,-313.608	1/1:67:0,66,0:0:0:66,0:2287,0:-205.731,-19.868,0,-205.731,-19.868,-205.731	1/1:73:0,73,0:0:0:73,0:2515,0:-226.599,-21.9752,0,-226.599,-21.9752,-226.599	1/2:154:0,84,70:0:0:84,70:2898,2445:-434.656,-199.234,-173.947,-235.77,0,-214.697	1/2:198:0,104,94:0:0:104,94:3693,3207:-561.484,-260.564,-229.257,-301.268,0,-272.971	1/2:170:0,73,97:0:0:73,97:2550,3370:-481.383,-273.956,-251.98,-207.657,0,-178.457	1/2:165:0,83,82:0:0:83,82:2933,2861:-471.856,-232.987,-208.001,-239.161,0,-214.476	1/1:51:0,51,0:0:0:51,0:1812,0:-163.302,-15.3525,0,-163.302,-15.3525,-163.302	1/1:68:0,68,0:0:0:68,0:2394,0:-215.716,-20.47,0,-215.716,-20.47,-215.716	1/1:71:0,71,0:0:0:71,0:2504,0:-225.612,-21.3731,0,-225.612,-21.3731,-225.612	1/2:77:0,35,42:0:0:35,42:1253,1466:-221.657,-119.473,-108.937,-102.422,0,-89.7792	1/1:82:0,82,0:0:0:82,0:2895,0:-260.787,-24.6845,0,-260.787,-24.6845,-260.787	1/1:60:0,59,1:0:0:59,1:2085,35:-187.511,-17.7608,0,-184.663,-14.5632,-184.362	1/2:84:0,48,36:0:0:48,36:1705,1280:-243.538,-104.608,-90.1582,-139.228,0,-128.391	1/1:57:0,57,0:0:0:57,0:1995,0:-179.822,-17.1587,0,-179.822,-17.1587,-179.822	1/2:35:0,15,20:0:0:15,20:531,690:-99.5976,-56.3415,-51.8261,-43.5511,0,-37.5305	1/2:151:0,87,64:0:0:87,64:3083,2224:-432.318,-181.159,-154.969,-251.51,0,-232.244	1/2:276:0,130,145:0:0:130,145:4587,5066:-785.675,-412.159,-373.025,-373.597,0,-329.947	1/2:103:0,35,68:0:0:35,68:1239,2349:-292.127,-191.201,-180.665,-101.277,0,-80.8066	1/2:119:0,62,56:0:0:62,56:2181,1941:-335.419,-157.875,-139.211,-177.66,0,-160.802	1/2:191:0,95,96:0:0:95,96:3373,3345:-547.092,-272.255,-243.657,-275.07,0,-246.172	1/1:66:0,66,0:0:0:66,0:2332,0:-210.141,-19.868,0,-210.141,-19.868,-210.141	1/2:504:0,233,270:0:0:233,270:8188,9497:-1439.47,-773.012,-702.872,-666.387,0,-585.109	1/1:180:0,180,0:0:0:180,0:6389,0:-575.102,-54.1854,0,-575.102,-54.1854,-575.102	1/1:29:0,29,0:0:0:29,0:1042,0:-94.0947,-8.72987,0,-94.0947,-8.72987,-94.0947	1/1:256:0,256,0:0:0:256,0:8961,0:-806.49,-77.0637,0,-806.49,-77.0637,-806.49	1/2:200:0,129,71:0:0:129,71:4492,2503:-569.424,-204.151,-165.318,-365.624,0,-344.251	1/1:197:0,197,0:0:0:197,0:6936,0:-624.256,-59.3029,0,-624.256,-59.3029,-624.256	1/1:3:0,3,0:0:0:3,0:106,0:-9.8891,-0.90309,0,-9.8891,-0.90309,-9.8891	1/1:13:0,13,0:0:0:13,0:465,0:-42.1881,-3.91339,0,-42.1881,-3.91339,-42.1881	1/1:7:0,7,0:0:0:7,0:244,0:-22.2999,-2.10721,0,-22.2999,-2.10721,-22.2999	1/1:4:0,4,0:0:0:4,0:136,0:-12.575,-1.20412,0,-12.575,-1.20412,-12.575	1/1:7:0,7,0:0:0:7,0:245,0:-22.3909,-2.10721,0,-22.3909,-2.10721,-22.3909	1/2:256:0,110,146:0:0:110,146:3921,5067:-731.856,-412.236,-379.123,-319.972,0,-276.022	1/1:258:0,258,0:0:0:258,0:9122,0:-820.969,-77.6657,0,-820.969,-77.6657,-820.969	1/1:64:0,64,0:0:0:64,0:2269,0:-204.472,-19.2659,0,-204.472,-19.2659,-204.472	1/2:7:0,2,5:0:0:2,5:72,176:-20.557,-14.6799,-14.0778,-6.23466,0,-4.72951	1/2:159:0,100,59:0:0:100,59:3547,2045:-455.489,-166.501,-136.398,-289.278,0,-271.518	1/1:37:0,37,0:0:0:37,0:1318,0:-118.863,-11.1381,0,-118.863,-11.1381,-118.863	1/1:133:0,132,1:0:0:132,1:4629,36:-416.422,-39.736,0,-413.485,-36.4387,-413.184	1/1:140:0,140,0:0:0:140,0:4880,0:-439.304,-42.1442,0,-439.304,-42.1442,-439.304	1/2:88:1,45,41:1:36:45,41:1584,1418:-240.98,-112.327,-101.719,-126.056,0,-116.652	1/2:173:0,73,100:0:0:73,100:2520,3537:-493.167,-288.439,-266.464,-205.076,0,-174.973	1/2:103:0,53,50:0:0:53,50:1862,1733:-292.755,-141.201,-125.246,-151.903,0,-136.852	1/1:242:0,242,0:0:0:242,0:8500,0:-764.957,-72.8493,0,-764.957,-72.8493,-764.957	1/2:158:0,58,100:0:0:58,100:2047,3471:-449.196,-282.505,-265.045,-167.042,0,-136.939	1/2:151:0,89,62:0:0:89,62:3138,2170:-432.342,-176.844,-150.052,-255.791,0,-237.127	1/2:168:0,72,96:0:0:72,96:2525,3311:-474.677,-269.198,-247.524,-205.709,0,-176.81	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	1/2:108:0,52,56:0:0:52,56:1856,1983:-313.197,-161.886,-146.233,-151.666,0,-134.808	1/2:48:0,32,16:0:0:32,16:1112,568:-137.033,-46.6354,-37.0024,-90.7502,0,-85.9337	1/1:28:0,28,0:0:0:28,0:989,0:-89.3242,-8.42884,0,-89.3242,-8.42884,-89.3242	1/2:151:0,74,77:0:0:74,77:2612,2656:-428.814,-216.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chr11	538454	.	G	A	100041	PASS	AB=0.458518;ABP=70.3876;AC=134;AF=0.712766;AN=188;AO=4927;CIGAR=1X;DP=7378;DPB=7378;DPRA=39.6559;EPP=10606.5;EPPR=1401.2;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.9101;MQMR=60;NS=94;NUMALT=1;ODDS=0.671819;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175947;QR=87186;RO=2450;RPL=11;RPP=10606.5;RPPR=1401.2;RPR=4916;RUN=1;SAF=0;SAP=10701.9;SAR=4927;SRF=0;SRP=5323.12;SRR=2450;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:24,26:24:860:26:914:-67.5232,0,-62.6703	0/1:62:39,23:39:1387:23:814:-54.9165,0,-106.464	0/1:127:66,61:66:2355:61:2175:-157.785,0,-173.978	0/1:144:78,66:78:2796:66:2368:-170.02,0,-208.532	1/1:25:1,24:1:36:24:860:-74.1212,-3.92748,0	1/1:21:0,21:0:0:21:747:-67.5543,-6.32163,0	0/1:37:19,18:19:680:18:639:-46.7001,0,-50.3911	0/1:89:52,37:52:1844:37:1293:-89.8573,0,-139.449	0/1:112:56,56:56:1967:56:1992:-145.839,0,-143.589	0/1:75:32,43:32:1132:43:1536:-115.955,0,-79.6113	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	1/1:116:0,116:0:0:116:4125:-371.427,-34.9195,0	1/1:54:1,53:1:36:53:1904:-168.039,-12.6573,0	0/1:78:45,33:45:1575:33:1179:-82.9365,0,-118.557	1/1:92:0,92:0:0:92:3294:-296.669,-27.6948,0	1/1:74:0,74:0:0:74:2651:-238.835,-22.2762,0	0/1:33:19,14:19:671:14:504:-35.7641,0,-50.7818	1/1:29:0,29:0:0:29:1035:-93.4631,-8.72987,0	0/1:33:21,12:21:756:12:432:-29.2872,0,-58.4332	0/1:157:81,76:81:2895:76:2713:-197.031,0,-213.524	0/1:129:73,56:73:2616:56:1988:-140.331,0,-196.855	0/1:103:67,36:67:2408:36:1283:-84.7665,0,-185.97	0/1:82:38,44:38:1345:44:1578:-117.627,0,-96.6637	0/1:75:46,29:46:1636:29:1036:-70.9767,0,-124.951	1/1:85:2,83:2:72:83:2956:-259.433,-18.7508,0	0/1:240:135,105:135:4830:105:3766:-266.891,0,-362.606	1/1:273:0,273:0:0:273:9755:-877.896,-82.1812,0	1/1:26:0,26:0:0:26:927:-83.7474,-7.82678,0	1/1:248:0,248:0:0:248:8861:-797.473,-74.6554,0	0/1:100:52,48:52:1860:48:1716:-124.62,0,-137.577	1/1:88:0,88:0:0:88:3148:-283.546,-26.4906,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:232:121,111:121:4296:111:3969:-287.553,0,-316.979	1/1:83:0,83:0:0:83:2976:-268.068,-24.9855,0	1/1:54:0,54:0:0:54:1925:-173.525,-16.2556,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:67:45,22:45:1600:22:788:-51.0758,0,-124.121	1/1:45:0,45:0:0:45:1598:-144.108,-13.5464,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:62:0,62:0:0:62:2223:-200.333,-18.6639,0	0/1:68:33,34:33:1175:34:1220:-89.7236,0,-85.6737	0/1:92:45,47:45:1603:47:1671:-122.979,0,-116.865	0/1:47:26,21:26:928:21:744:-53.1359,0,-69.6898	1/1:95:2,93:2:68:93:3336:-293.999,-22.1401,0	0/1:71:32,39:32:1152:39:1392:-104.201,0,-82.617	0/1:81:44,37:44:1564:37:1328:-95.4388,0,-116.668	0/1:99:47,52:47:1665:52:1858:-137.697,0,-120.333	0/1:16:9,7:9:324:7:243:-17.391,0,-24.6894	0/1:110:66,44:66:2344:44:1575:-108.913,0,-178.107	0/1:70:32,38:32:1148:38:1364:-101.989,0,-82.5577	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:98:49,49:49:1734:49:1764:-129.543,0,-126.842	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:101:43,58:43:1540:58:2080:-157.038,0,-108.489	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:135:1,134:1:36:134:4799:-428.457,-37.0408,0	0/1:163:101,62:101:3598:62:2228:-151.688,0,-274.959	0/1:79:43,36:43:1523:36:1284:-92.0797,0,-113.581	1/1:39:0,39:0:0:39:1388:-125.219,-11.7402,0	0/1:105:67,38:67:2377:38:1343:-89.5589,0,-182.579	0/1:134:94,40:94:3335:40:1428:-88.4511,0,-260.031	0/1:33:16,17:16:572:17:608:-45.118,0,-41.8794	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:48:28,20:28:987:20:720:-50.6793,0,-74.6936	0/1:29:16,13:16:572:13:468:-33.7298,0,-43.0836	0/1:137:82,55:82:2905:55:1930:-132.731,0,-220.445	0/1:57:30,27:30:1076:27:964:-69.9172,0,-79.9941	0/1:131:79,52:79:2799:52:1845:-126.893,0,-212.716	1/1:131:0,131:0:0:131:4704:-423.511,-39.4349,0	1/1:48:1,47:1:36:47:1688:-148.609,-10.8512,0	1/1:102:0,102:0:0:102:3620:-326,-30.7051,0	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:78:37,41:37:1307:41:1466:-108.755,0,-94.4504	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	1/1:171:0,171:0:0:171:6106:-549.637,-51.4761,0	0/1:67:30,37:30:1076:37:1323:-99.2023,0,-76.9838	0/1:78:37,41:37:1324:41:1463:-108.485,0,-95.9818	0/1:60:32,28:32:1140:28:976:-70.0878,0,-84.8474	1/1:150:0,150:0:0:150:5343:-480.971,-45.1545,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:75:37,38:37:1305:38:1351:-99.3123,0,-95.1722	0/1:76:35,41:35:1247:41:1476:-110.258,0,-89.6558	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:162:77,85:77:2709:85:3033:-224.422,0,-195.285	0/1:75:44,31:44:1572:31:1116:-78.1744,0,-119.194	1/1:102:0,102:0:0:102:3580:-322.336,-30.7051,0	1/1:80:0,80:0:0:80:2867:-258.207,-24.0824,0
chr11	538844	.	CG	GG	71865.8	PASS	AB=0.450687;ABP=70.6865;AC=136;AF=0.723404;AN=188;AO=3514;CIGAR=1X1M;DP=5284;DPB=5284;DPRA=0;EPP=7495.22;EPPR=3690.89;GTI=3;LEN=1;MEANALT=1.21277;MQM=59.3432;MQMR=59.9891;NS=94;NUMALT=1;ODDS=0.243252;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125665;QR=61695;RO=1746;RPL=3497;RPP=7486.62;RPPR=3529.92;RPR=17;RUN=1;SAF=3513;SAP=7624.88;SAR=1;SRF=1727;SRP=3631.17;SRR=19;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:19,7:19:653:7:252:-14.8067,0,-50.9032	0/1:20:13,7:13:468:7:248:-16.6353,0,-36.439	0/1:65:35,30:35:1258:30:1076:-77.5637,0,-93.9585	0/1:92:55,36:55:1888:36:1296:-89.1833,0,-142.438	1/1:62:0,62:0:0:62:2211:-199.145,-18.6639,0	1/1:8:0,8:0:0:8:284:-25.9015,-2.40824,0	0/1:22:10,12:10:348:12:432:-32.5985,0,-25.0321	0/1:77:49,25:49:1743:25:893:-58.0416,0,-134.519	0/1:31:13,18:13:466:18:648:-49.3023,0,-32.9468	0/1:68:33,35:33:1162:35:1248:-92.1264,0,-84.4147	1/1:43:0,43:0:0:43:1536:-138.504,-12.9443,0	1/1:54:0,54:0:0:54:1936:-174.455,-16.2556,0	1/1:41:0,41:0:0:41:1453:-131.03,-12.3422,0	0/1:65:40,24:40:1432:24:851:-57.3897,0,-109.66	1/1:37:0,37:0:0:37:1328:-119.633,-11.1381,0	1/1:40:0,40:0:0:40:1440:-129.872,-12.0412,0	0/1:26:16,10:16:568:10:360:-24.9129,0,-43.6245	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:17:7,10:7:250:10:360:-27.609,0,-17.7292	0/1:107:62,45:62:2148:45:1614:-113.283,0,-161.372	0/1:116:72,44:72:2519:44:1576:-107.181,0,-192.039	0/1:82:58,23:58:2030:23:806:-48.0218,0,-158.225	0/1:100:55,43:55:1952:43:1548:-109.763,0,-146.077	0/1:46:15,31:15:535:31:1116:-86.6567,0,-34.6369	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	0/1:177:79,96:79:2782:96:3433:-256.112,0,-197.581	1/1:162:0,162:0:0:162:5796:-521.575,-48.7669,0	1/1:10:0,10:0:0:10:345:-31.3356,-3.0103,0	1/1:157:0,157:0:0:157:5625:-506.235,-47.2617,0	0/1:41:23,18:23:804:18:629:-44.5915,0,-60.3344	1/1:83:0,83:0:0:83:2960:-266.462,-24.9855,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:120:67,53:67:2391:53:1900:-135.053,0,-179.322	1/1:63:0,63:0:0:63:2263:-203.618,-18.9649,0	1/1:18:0,18:0:0:18:647:-58.5299,-5.41854,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:36:24,12:24:858:12:432:-28.3616,0,-66.7045	1/1:34:0,34:0:0:34:1224:-110.445,-10.235,0	1/1:79:0,79:0:0:79:2838:-255.353,-23.7814,0	1/1:36:0,36:0:0:36:1292:-116.364,-10.8371,0	0/1:43:25,18:25:875:18:630:-43.9175,0,-66.1207	0/1:48:17,31:17:604:31:1116:-86.245,0,-40.2416	0/1:31:14,17:14:493:17:599:-44.9015,0,-35.3697	1/1:111:0,111:0:0:111:3971:-357.404,-33.4143,0	0/1:48:17,30:17:610:30:1070:-81.928,0,-40.7247	0/1:45:19,26:19:680:26:936:-71.0131,0,-47.983	0/1:96:39,57:39:1385:57:2044:-155.276,0,-96.0502	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:49:19,30:19:682:30:1072:-82.0198,0,-46.9594	0/1:60:30,30:30:1069:30:1051:-76.7606,0,-78.4592	1/1:5:0,5:0:0:5:176:-16.1803,-1.50515,0	0/1:88:46,42:46:1598:42:1504:-109.164,0,-117.615	1/1:19:0,18:0:0:18:644:-57.9356,-5.41854,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:46:0,42:0:0:42:1508:-135.678,-12.6433,0	0/1:172:74,98:74:2638:98:3505:-263.766,0,-185.889	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	1/1:119:0,119:0:0:119:4248:-382.053,-35.8226,0	0/1:116:59,55:59:2098:55:1957:-141.314,0,-154.413	0/1:65:42,23:42:1493:23:824:-54.8939,0,-115.097	1/1:37:0,37:0:0:37:1328:-119.693,-11.1381,0	0/1:104:70,33:70:2464:33:1180:-75.044,0,-190.647	0/1:70:54,16:54:1914:16:576:-31.1029,0,-151.463	0/1:16:9,7:9:322:7:248:-17.8477,0,-24.5077	1/1:23:0,23:0:0:23:820:-74.1049,-6.92369,0	0/1:52:22,30:22:776:30:1080:-81.8246,0,-54.5064	0/1:19:14,5:14:491:5:180:-10.8325,0,-38.8013	0/1:124:64,60:64:2277:60:2144:-155.856,0,-167.864	0/1:65:38,26:38:1335:26:932:-64.5555,0,-100.822	0/1:135:81,52:81:2877:52:1868:-127.825,0,-218.77	1/1:72:1,70:1:36:70:2489:-220.655,-18.1322,0	1/1:82:0,82:0:0:82:2938:-264.584,-24.6845,0	1/1:47:2,45:2:72:45:1595:-136.631,-7.31169,0	0/1:10:9,1:9:315:1:36:-0.587975,0,-25.6769	0/1:49:28,21:28:1004:21:756:-53.6137,0,-75.9256	1/1:51:0,51:0:0:51:1832:-165.093,-15.3525,0	1/1:145:1,144:1:36:144:5092:-454.601,-40.0511,0	0/1:69:33,36:33:1177:36:1285:-95.1443,0,-85.4656	0/1:42:22,20:22:774:20:720:-52.457,0,-57.3369	0/1:26:13,13:13:461:13:468:-34.6043,0,-33.9987	1/1:88:0,88:0:0:88:3151:-283.478,-26.4906,0	1/1:21:0,21:0:0:21:756:-68.345,-6.32163,0	0/1:44:25,19:25:881:19:684:-48.6227,0,-66.3618	0/1:44:28,16:28:984:16:576:-38.9297,0,-75.6265	1/1:16:0,16:0:0:16:568:-51.2936,-4.81648,0	0/1:78:49,29:49:1689:29:1044:-70.7716,0,-128.809	0/1:43:26,17:26:934:17:608:-42.1077,0,-71.435	1/1:87:0,87:0:0:87:3116:-280.628,-26.1896,0	1/1:68:0,68:0:0:68:2432:-219.107,-20.47,0
chr11	538852	.	T	C	30849.5	PASS	AB=0.543195;ABP=55.1607;AC=52;AF=0.276596;AN=188;AO=1752;CIGAR=1X;DP=5315;DPB=5315;DPRA=1.38237;EPP=3807.43;EPPR=7733.45;GTI=3;LEN=1;MEANALT=1.03636;MQM=59.9749;MQMR=59.3163;NS=94;NUMALT=1;ODDS=0.00877584;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62593;QR=127377;RO=3560;RPL=1734;RPP=3652.69;RPPR=7724.77;RPR=18;RUN=1;SAF=1734;SAP=3652.69;SAR=18;SRF=3559;SRP=7724.77;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:7,19:7:252:19:675:-53.2502,0,-15.1665	0/1:21:7,14:7:248:14:500:-39.0145,0,-16.3343	0/1:65:30,35:30:1076:35:1256:-93.7783,0,-77.5637	0/1:93:37,56:37:1332:56:2000:-152.278,0,-92.1734	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.852	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2628	0/1:23:13,10:13:464:10:360:-25.8206,0,-35.1738	0/1:76:26,50:26:936:50:1792:-138.684,0,-60.7768	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.3023	0/1:68:35,33:35:1260:33:1188:-86.7586,0,-93.207	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.504	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.168	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.519	0/1:67:27,40:27:955:40:1427:-108.558,0,-66.06	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.913	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.153	0/1:26:10,16:10:360:16:576:-44.3482,0,-24.9129	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5465	0/1:109:47,61:47:1671:61:2156:-161.583,0,-117.581	0/1:117:45,71:45:1608:71:2556:-195.01,0,-109.664	0/1:80:22,58:22:783:58:2067:-162.218,0,-46.6739	0/1:100:45,55:45:1611:55:1951:-145.753,0,-115.131	0/1:46:31,15:31:1112:15:540:-35.0892,0,-86.3228	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:176:95,81:95:3416:81:2895:-207.804,0,-254.611	0/0:162:161,1:161:5784:1:36:0,-45.1934,-516.951	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.336	0/0:155:155,0:155:5528:0:0:0,-46.6596,-497.501	0/1:43:19,24:19:675:24:860:-64.7775,0,-48.1327	0/0:85:84,1:84:3020:1:36:0,-22.0207,-268.32	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:122:54,68:54:1922:68:2435:-182.679,0,-136.428	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.66	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.3764	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978	0/1:35:12,23:12:428:23:828:-64.3081,0,-28.3002	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.445	0/0:81:81,0:81:2893:0:0:0,-24.3834,-259.955	0/0:36:36,0:36:1288:0:0:0,-10.8371,-115.824	0/1:43:18,25:18:648:25:883:-66.8432,0,-45.5448	0/1:49:32,17:32:1148:17:612:-40.663,0,-88.8221	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7155	0/0:111:111,0:111:3979:0:0:0,-33.4143,-358.118	0/1:47:29,18:29:1040:18:644:-44.1422,0,-79.3764	0/1:46:27,19:27:953:19:684:-48.0429,0,-72.2359	0/1:99:59,40:59:2120:40:1416:-97.9354,0,-160.719	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:49:30,19:30:1067:19:672:-46.0558,0,-81.5685	0/1:60:30,30:30:1076:30:1080:-79.4515,0,-78.7025	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7858	0/1:88:42,46:42:1504:46:1622:-119.777,0,-109.164	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.0837	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.783	0/1:173:98,75:98:3519:75:2692:-190.446,0,-264.727	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:118:118,0:118:4227:0:0:0,-35.5215,-380.222	0/1:113:55,58:55:1976:58:2076:-153.094,0,-142.987	0/1:65:24,41:24:864:41:1457:-111.857,0,-58.4932	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.439	0/1:105:35,70:35:1256:70:2483:-192.113,0,-81.639	0/1:70:16,54:16:572:54:1919:-151.914,0,-30.7413	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2271	0/1:53:31,22:31:1107:22:788:-55.2902,0,-83.9505	0/1:19:5,14:5:176:14:500:-39.6166,0,-10.4654	0/1:124:60,64:60:2156:64:2287:-168.763,0,-156.939	0/1:65:27,38:27:968:38:1364:-103.494,0,-67.8528	0/1:134:52,82:52:1851:82:2940:-224.496,0,-126.316	0/0:76:76,0:76:2704:0:0:0,-22.8783,-243.529	0/0:83:83,0:83:2966:0:0:0,-24.9855,-267.128	0/0:48:46,2:46:1656:2:72:0,-7.61272,-141.993	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:48:20,28:20:716:28:1008:-76.5869,0,-50.3167	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.482	0/0:147:147,0:147:5209:0:0:0,-44.2514,-468.785	0/1:69:36,33:36:1296:33:1184:-86.0972,0,-96.1099	0/1:42:20,22:20:720:22:792:-58.9624,0,-52.457	0/1:26:13,13:13:464:13:468:-34.6329,0,-34.2422	0/0:90:89,0:89:3195:0:0:0,-26.7917,-287.189	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0093	0/1:44:19,25:19:676:25:900:-68.0757,0,-47.9032	0/1:46:18,28:18:635:28:995:-76.012,0,-43.6119	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.8938	0/1:81:31,50:31:1099:50:1765:-134.747,0,-74.8041	0/1:43:17,26:17:612:26:936:-71.6152,0,-42.4691	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.58	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.065
chr11	543886	.	CT	TT,TC	120803	PASS	AB=0.505124,0.493704;ABP=3.78923,4.18601;AC=131,53;AF=0.711957,0.288043;AN=184;AO=4209,1694;CIGAR=1X1M,2X;DP=5908;DPB=5914.5;DPRA=0,1.28966;EPP=9099.36,3664.13;EPPR=0;GTI=0;LEN=1,2;MEANALT=1.71739,2.08197;MQM=59.9489,59.4782;MQMR=0;NS=92;NUMALT=2;ODDS=1.48831;PAIRED=0,0;PAIREDR=0;PAO=6.5,6.5;PQA=228,228;PQR=0;PRO=0;QA=147900,57319;QR=0;RO=0;RPL=4204,1693;RPP=9099.36,3672.8;RPPR=0;RPR=5,1;RUN=1,1;SAF=4209,1693;SAP=9142.74,3672.8;SAR=0,1;SRF=0;SRP=0;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:34:0,23,11:0:0:23,11:812,380:-97.3495,-31.22,-24.2963,-66.4772,0,-63.1659	1/2:55:0,34,21:0:0:34,21:1202,709:-155.705,-57.7997,-47.5647,-98.2492,0,-91.9276	1/2:129:0,71,58:0:0:71,58:2529,1971:-366.322,-160.181,-138.808,-206.488,0,-189.028	1/2:135:0,54,80:0:0:54,80:1884,2744:-375.915,-222.684,-206.429,-153.159,0,-129.076	1/1:29:0,28,1:0:0:28,1:1000,36:-89.9556,-8.42884,0,-87.0181,-5.1316,-86.7171	1/1:10:0,10,0:0:0:10,0:352,0:-32.0182,-3.0103,0,-32.0182,-3.0103,-32.0182	1/2:43:0,21,22:0:0:21,22:740,727:-119.364,-59.1041,-52.7825,-60.6017,0,-53.9791	1/2:60:0,33,27:0:0:33,27:1151,924:-168.957,-75.3427,-65.4087,-93.9592,0,-85.8314	1/2:52:0,25,27:0:0:25,27:857,877:-140.682,-71.103,-63.5772,-69.9134,0,-61.7856	1/2:57:0,34,23:0:0:34,23:1193,775:-160.22,-63.1322,-52.8972,-97.43,0,-90.5063	1/1:62:0,62,0:0:0:62,0:2165,0:-195.057,-18.6639,0,-195.057,-18.6639,-195.057	1/1:78:0,78,0:0:0:78,0:2686,0:-241.985,-23.4803,0,-241.985,-23.4803,-241.985	1/1:63:0,63,0:0:0:63,0:2229,0:-200.873,-18.9649,0,-200.873,-18.9649,-200.873	1/2:62:0,38,23:0:0:38,23:1293,756:-166.094,-61.1976,-49.7585,-105.013,0,-98.0894	1/1:64:0,64,0:0:0:64,0:2249,0:-202.612,-19.2659,0,-202.612,-19.2659,-202.612	1/1:64:0,64,0:0:0:64,0:2250,0:-202.763,-19.2659,0,-202.763,-19.2659,-202.763	1/2:27:0,10,17:0:0:10,17:339,576:-74.5232,-47.0348,-44.0245,-27.8272,0,-22.7097	1/1:32:0,32,0:0:0:32,0:1112,0:-100.385,-9.63296,0,-100.385,-9.63296,-100.385	1/2:23:0,19,4:0:0:19,4:663,133:-65.0233,-11.0844,-5.36483,-54.2739,0,-53.0698	1/2:100:0,50,49:0:0:50,49:1749,1660:-276.846,-134.555,-119.503,-142.276,0,-127.525	1/2:69:0,41,28:0:0:41,28:1429,951:-193.679,-77.4655,-65.1233,-116.557,0,-108.128	1/2:74:0,29,45:0:0:29,45:1018,1563:-210.198,-127.352,-118.622,-83.1958,0,-69.6495	1/2:74:0,35,39:0:0:35,39:1248,1341:-210.963,-109.225,-98.6888,-102.089,0,-90.3486	1/2:34:0,19,15:0:0:19,15:657,504:-94.554,-41.1633,-35.4437,-53.7309,0,-49.2154	1/1:72:0,72,0:0:0:72,0:2526,0:-227.59,-21.6742,0,-227.59,-21.6742,-227.59	1/2:182:0,85,97:0:0:85,97:3007,3294:-512.357,-267.465,-241.878,-245.239,0,-216.039	1/1:147:0,147,0:0:0:147,0:5184,0:-466.706,-44.2514,0,-466.706,-44.2514,-466.706	1/1:28:0,28,0:0:0:28,0:999,0:-90.2082,-8.42884,0,-90.2082,-8.42884,-90.2082	1/1:179:0,178,1:0:0:178,1:6278,36:-564.762,-53.5833,0,-561.825,-50.2861,-561.524	1/2:58:0,32,26:0:0:32,26:1116,906:-164.79,-74.0262,-64.3932,-91.1121,0,-83.2853	1/1:68:0,68,0:0:0:68,0:2403,0:-216.465,-20.47,0,-216.465,-20.47,-216.465	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	.:.:.:.:.:.:.:.	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:133:0,72,61:0:0:72,61:2524,2028:-369.757,-164.361,-142.687,-205.678,0,-187.315	1/1:117:0,116,1:0:0:116,1:4103,36:-368.9,-34.9195,0,-365.963,-31.6222,-365.662	1/1:55:0,55,0:0:0:55,0:1930,0:-173.976,-16.5567,0,-173.976,-16.5567,-173.976	.:.:.:.:.:.:.:.	1/2:87:0,37,50:0:0:37,50:1285,1699:-242.587,-138.12,-126.982,-104.81,0,-89.7588	1/1:34:0,34,0:0:0:34,0:1211,0:-109.296,-10.235,0,-109.296,-10.235,-109.296	1/1:111:0,111,0:0:0:111,0:3935,0:-354.346,-33.4143,0,-354.346,-33.4143,-354.346	1/1:45:0,45,0:0:0:45,0:1527,0:-137.713,-13.5464,0,-137.713,-13.5464,-137.713	1/2:52:0,34,18:0:0:34,18:1173,619:-145.902,-50.6096,-40.3746,-95.637,0,-90.2184	1/2:71:0,37,34:0:0:37,34:1288,1143:-197.602,-92.8648,-81.7267,-105.021,0,-94.7864	1/2:43:0,20,23:0:0:20,23:703,802:-122.797,-65.5741,-59.5535,-57.5729,0,-50.6492	1/1:125:0,123,1:0:0:123,1:4323,36:-388.89,-37.0267,0,-385.952,-34.0893,-385.651	1/2:68:0,36,32:0:0:36,32:1283,1120:-196.052,-91.4696,-80.6325,-104.936,0,-95.3026	1/2:42:0,27,15:0:0:27,15:960,529:-121.659,-43.4242,-35.2964,-78.5885,0,-74.073	1/2:96:0,35,61:0:0:35,61:1210,2067:-266.188,-167.869,-157.333,-98.6042,0,-80.2413	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:120:0,54,66:0:0:54,66:1936,2271:-342.677,-184.768,-168.513,-158.261,0,-138.393	1/2:30:0,14,16:0:0:14,16:504,544:-85.5948,-44.4617,-40.2472,-41.4837,0,-36.6672	1/1:7:0,7,0:0:0:7,0:240,0:-21.9347,-2.10721,0,-21.9347,-2.10721,-21.9347	1/2:95:0,45,50:0:0:45,50:1620,1684:-268.937,-136.742,-123.195,-132.544,0,-117.492	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/2:12:0,9,3:0:0:9,3:320,106:-35.0654,-8.98601,-6.27674,-26.4331,0,-25.53	1/2:5:0,1,4:0:0:1,4:36,133:-14.0369,-11.094,-10.793,-3.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chr11	587649	.	T	A,G	331865	PASS	AB=0.42345,0.576168;ABP=668.91,662.278;AC=97,91;AF=0.515957,0.484043;AN=188;AO=5622,7543;CIGAR=1X,1X;DP=13170;DPB=13170;DPRA=0,11.7903;EPP=1353.67,1479.9;EPPR=5.18177;GTI=3;LEN=1,1;MEANALT=2,2.01075;MQM=45.3492,59.8771;MQMR=50.5;NS=94;NUMALT=2;ODDS=109.564;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=201090,268729;QR=144;RO=4;RPL=0,0;RPP=12211,16382.4;RPPR=11.6962;RPR=5622,7543;RUN=1,1;SAF=3746,4904;SAP=1353.67,1479.9;SAR=1876,2639;SRF=3;SRP=5.18177;SRR=1;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:44:0,12,32:0:0:12,32:432,1148:-128.199,-93.9969,-90.3845,-34.5548,0,-24.9219	1/2:154:1,70,83:1:36:70,83:2516,2976:-434.755,-239.79,-221.655,-192.319,0,-170.272	1/2:135:0,78,57:0:0:78,57:2808,2012:-381.554,-163.17,-139.69,-218.732,0,-201.573	1/2:227:0,88,139:0:0:88,139:3156,4972:-657.404,-405.727,-379.236,-252.031,0,-210.188	1/2:90:0,46,44:0:0:46,44:1648,1571:-260.476,-128.436,-114.589,-132.395,0,-119.149	1/2:35:0,11,24:0:0:11,24:396,856:-101.197,-70.1364,-66.8251,-31.411,0,-24.1863	1/2:192:0,67,125:0:0:67,125:2408,4436:-550.365,-359.796,-339.627,-190.92,0,-153.291	1/2:132:0,74,58:0:0:74,58:2651,2076:-372.38,-169.651,-147.375,-203.078,0,-185.618	1/2:83:0,16,67:0:0:16,67:568,2382:-238.015,-194.465,-189.649,-43.8896,0,-23.7206	1/2:120:0,40,80:0:0:40,80:1423,2860:-346.701,-233.555,-221.514,-113.497,0,-89.4144	1/2:201:0,99,102:0:0:99,102:3552,3645:-582.038,-297.534,-267.732,-284.858,0,-254.153	1/2:123:0,43,80:0:0:43,80:1542,2845:-350.735,-232.206,-219.262,-118.874,0,-94.7917	1/2:158:0,70,88:0:0:70,88:2508,3140:-452.473,-256.333,-235.261,-196.49,0,-169.999	1/2:227:0,97,130:0:0:97,130:3468,4652:-652.362,-379.708,-350.508,-273.006,0,-233.872	1/2:205:0,82,123:0:0:82,123:2948,4375:-588.616,-356.83,-332.145,-232.137,0,-195.11	1/2:179:0,45,134:0:0:45,134:1608,4804:-520.334,-392.176,-378.63,-128.51,0,-88.1716	1/2:103:0,41,62:0:0:41,62:1476,2220:-293.98,-180.461,-168.118,-113.867,0,-95.203	1/2:105:0,42,63:0:0:42,63:1508,2255:-302.554,-184.247,-171.604,-118.657,0,-99.6924	1/2:89:0,25,64:0:0:25,64:900,2291:-255.678,-185.91,-178.384,-70.1152,0,-50.8493	1/2:284:0,100,184:0:0:100,184:3550,6538:-818.229,-533.103,-503,-285.477,0,-230.088	1/2:178:0,55,123:0:0:55,123:1964,4373:-510.101,-355.136,-338.579,-155.314,0,-118.287	1/2:86:0,44,42:0:0:44,42:1563,1485:-246.505,-121.299,-108.054,-125.558,0,-112.914	1/2:83:0,26,57:0:0:26,57:936,2023:-240.623,-165.184,-157.357,-75.7952,0,-58.6365	1/2:203:0,100,103:0:0:100,103:3588,3666:-584.937,-299.136,-269.033,-286.154,0,-255.148	1/2:101:0,25,76:0:0:25,76:896,2712:-293.434,-221.446,-213.92,-72.3422,0,-49.4639	1/2:376:0,199,177:0:0:199,177:7094,6286:-1078.11,-512.523,-452.618,-565.936,0,-512.654	1/2:156:0,56,100:0:0:56,100:1998,3570:-449.682,-291.405,-274.548,-158.627,0,-128.524	1/2:99:0,30,69:0:0:30,69:1072,2460:-285.935,-200.88,-191.849,-85.406,0,-64.6349	1/2:355:0,209,146:0:0:209,146:7467,5214:-1021.47,-425.318,-362.403,-596.503,0,-552.553	1/2:85:0,32,53:0:0:32,53:1148,1904:-247.223,-155.683,-146.05,-91.8938,0,-75.9392	1/2:176:0,74,102:0:0:74,102:2630,3636:-506.791,-296.739,-274.462,-210.405,0,-179.7	1/1:12:0,12,0:0:0:12,0:432,0:-38.3414,-3.61236,0,-38.3414,-3.61236,-38.3414	1/2:26:0,18,8:0:0:18,8:648,288:-75.5348,-23.8592,-18.4406,-52.0332,0,-49.6249	1/2:10:0,6,4:0:0:6,4:216,144:-28.842,-12.1095,-10.3033,-17.0858,0,-15.8817	1/2:3:0,2,1:0:0:2,1:72,36:-8.9526,-3.29724,-2.69518,-6.01126,0,-5.71023	1/1:21:0,20,1:0:0:20,1:715,36:-60.9156,-6.0206,0,-57.9772,-2.72336,-57.6762	1/2:596:0,297,299:0:0:297,299:10627,10654:-1721.86,-868.764,-779.358,-853.445,0,-763.438	1/2:96:1,33,61:1:36:33,61:1188,2192:-269.987,-175.89,-168.889,-91.46,0,-76.0302	1/2:112:0,38,74:0:0:38,74:1364,2664:-323.995,-217.729,-206.29,-106.616,0,-84.34	1/2:20:0,17,3:0:0:17,3:612,108:-58.0511,-9.17208,-4.05457,-49.2378,0,-48.3347	1/2:251:0,141,110:0:0:141,110:5064,3898:-720.999,-317.901,-275.455,-403.451,0,-370.338	1/2:152:0,80,72:0:0:80,72:2868,2580:-438.323,-210.705,-186.623,-227.972,0,-206.298	1/2:194:0,67,127:0:0:67,127:2412,4514:-559.43,-367.136,-346.967,-192.648,0,-154.417	1/2:205:0,70,135:0:0:70,135:2510,4831:-594.402,-394.305,-373.233,-200.45,0,-159.811	1/2:196:0,84,112:0:0:84,112:3012,3980:-564.291,-324.305,-299.018,-240.339,0,-206.624	1/2:91:0,13,78:0:0:13,78:460,2780:-264.161,-226.944,-223.03,-37.5695,0,-14.0891	1/2:118:0,63,55:0:0:63,55:2252,1980:-338.802,-161.918,-142.953,-177.237,0,-160.68	1/2:189:0,103,86:0:0:103,86:3680,3030:-539.232,-246.484,-215.478,-293.098,0,-267.21	1/2:85:0,31,54:0:0:31,54:1097,1930:-244.705,-157.697,-148.365,-87.3577,0,-71.102	1/2:103:0,35,68:0:0:35,68:1252,2397:-294.801,-195.514,-184.978,-99.6375,0,-79.1674	1/2:199:0,77,122:0:0:77,122:2756,4308:-571.417,-349.895,-326.715,-221.875,0,-185.15	1/2:15:0,6,9:0:0:6,9:212,324:-43.6076,-26.7966,-24.9904,-17.1619,0,-14.4526	1/2:97:0,39,58:0:0:39,58:1392,2061:-275.442,-168.3,-156.56,-107.488,0,-90.028	1/2:42:0,9,33:0:0:9,33:324,1176:-122.398,-96.2138,-93.5045,-26.5404,0,-16.6064	1/2:14:0,8,6:0:0:8,6:277,212:-38.3275,-17.6186,-15.2104,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chr11	587660	.	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chr11	587688	.	C	G	124058	PASS	AB=0.412751;ABP=952.952;AC=96;AF=0.510638;AN=188;AO=5994;CIGAR=1X;DP=14436;DPB=14436;DPRA=0;EPP=477.132;EPPR=433.813;GTI=2;LEN=1;MEANALT=1.15957;MQM=46.0747;MQMR=59.9759;NS=94;NUMALT=1;ODDS=109.294;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212846;QR=298787;RO=8427;RPL=5994;RPP=13018.8;RPPR=18102.8;RPR=0;RUN=1;SAF=3569;SAP=477.132;SAR=2425;SRF=4837;SRP=403.706;SRR=3590;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:45,22:45:1560:22:779:-49.2639,0,-120.516	0/1:235:129,106:129:4601:106:3775:-260.474,0,-343.512	0/1:220:103,116:103:3657:116:4113:-293.633,0,-263.047	0/1:224:136,88:136:4799:88:3125:-208.384,0,-364.637	0/1:90:45,45:45:1607:45:1601:-114.903,0,-117.827	0/1:65:46,19:46:1652:19:680:-40.5195,0,-129.402	0/1:192:128,64:128:4498:64:2257:-142.003,0,-347.191	0/1:216:107,109:107:3775:109:3866:-271.796,0,-274.928	0/1:122:89,32:89:3150:32:1129:-62.4983,0,-246.94	0/1:121:82,39:82:2928:39:1392:-86.4432,0,-227.331	0/1:195:100,95:100:3575:95:3379:-241.534,0,-263.256	0/1:191:130,61:130:4573:61:2171:-131.132,0,-354.243	0/1:254:152,102:152:5376:102:3590:-239.744,0,-407.515	0/1:228:133,94:133:4710:94:3326:-225.654,0,-355.37	0/1:200:122,77:122:4338:77:2740:-180.743,0,-330.334	0/1:180:136,44:136:4816:44:1568:-85.4626,0,-379.413	0/1:192:112,80:112:3984:80:2854:-194.632,0,-300.948	0/1:183:112,71:112:3977:71:2518:-166.612,0,-303.033	0/1:140:99,40:99:3517:40:1410:-80.8174,0,-274.537	0/1:286:185,101:185:6589:101:3578:-232.533,0,-506.982	0/1:180:130,50:130:4536:50:1759:-101.687,0,-354.215	0/1:88:44,44:44:1543:44:1559:-112.497,0,-112.668	0/1:86:59,27:59:2075:27:955:-59.4637,0,-161.129	0/1:203:104,99:104:3683:99:3520:-250.364,0,-270.563	0/1:101:76,25:76:2711:25:890:-49.0797,0,-213.83	0/1:367:175,192:175:6175:192:6846:-496.951,0,-445.343	0/1:155:102,53:102:3627:53:1884:-119.109,0,-279.97	0/1:102:71,31:71:2539:31:1085:-65.6868,0,-198.055	0/1:348:143,205:143:5094:205:7289:-539.18,0,-353.801	0/1:85:54,31:54:1936:31:1092:-71.2395,0,-148.929	0/1:178:104,74:104:3719:74:2635:-180.041,0,-281.328	1/1:12:0,12:0:0:12:432:-38.3414,-3.61236,0	0/1:27:9,18:9:324:18:635:-48.25,0,-21.378	0/1:13:5,8:5:180:8:288:-21.4374,0,-12.6387	0/1:6:1,5:1:36:5:171:-13.6852,0,-1.79209	0/1:20:2,18:2:72:18:635:-48.8698,0,-0.816122	0/1:584:293,289:293:10441:289:10264:-738.449,0,-764.056	0/1:92:58,33:58:2080:33:1188:-77.705,0,-159.805	0/1:169:110,59:110:3884:59:2082:-132.159,0,-298.883	0/1:19:3,16:3:108:16:568:-44.7631,0,-4.3556	0/1:255:112,142:112:3955:142:5039:-368.245,0,-279.319	0/1:150:71,79:71:2513:79:2788:-201.025,0,-181.267	0/1:189:125,64:125:4446:64:2296:-146.234,0,-343.415	0/1:206:135,71:135:4766:71:2501:-159.398,0,-367.089	0/1:196:114,82:114:4008:82:2869:-196.034,0,-301.908	0/1:89:76,13:76:2724:13:456:-14.3396,0,-218.611	0/1:159:85,74:85:2951:74:2617:-181.526,0,-217.958	0/1:194:89,105:89:3176:105:3727:-270.014,0,-227.665	0/1:79:52,27:52:1806:27:960:-61.9267,0,-139.033	0/1:100:65,35:65:2323:35:1243:-79.3165,0,-179.227	0/1:195:123,72:123:4339:72:2574:-170.357,0,-331.988	0/1:14:9,5:9:320:5:172:-11.5237,0,-24.9279	0/1:159:103,56:103:3691:56:1991:-125.824,0,-284.528	0/1:41:32,9:32:1140:9:316:-16.208,0,-90.567	0/1:13:6,7:6:216:7:248:-17.2127,0,-15.8771	0/1:213:97,115:97:3415:115:4093:-297.182,0,-243.388	0/1:80:58,22:58:2033:22:792:-45.2466,0,-159.156	0/1:15:3,12:3:108:12:420:-32.8836,0,-5.55972	0/1:18:12,6:12:423:6:216:-14.2208,0,-32.9865	0/1:93:67,26:67:2408:26:928:-54.9953,0,-188.98	0/1:306:156,150:156:5519:150:5385:-385.322,0,-404.722	0/1:5:2,3:2:72:3:104:-8.0856,0,-5.33157	0/1:109:73,36:73:2616:36:1271:-80.7851,0,-202.875	0/1:268:123,145:123:4383:145:5127:-374.543,0,-313.969	0/1:91:59,32:59:2084:32:1148:-74.3234,0,-160.434	0/1:103:65,38:65:2300:38:1338:-87.7885,0,-176.252	0/1:170:119,50:119:4222:50:1783:-107.012,0,-328.926	0/1:154:72,82:72:2529:82:2905:-211.702,0,-181.5	0/1:60:36,24:36:1250:24:860:-58.4043,0,-94.7361	0/1:101:74,27:74:2636:27:948:-53.8116,0,-207.083	0/1:256:134,122:134:4775:122:4326:-307.448,0,-352.845	0/1:26:13,13:13:468:13:464:-33.7792,0,-34.6329	0/1:86:41,44:41:1468:44:1567:-113.214,0,-106.513	0/1:106:59,47:59:2073:47:1684:-115.585,0,-154.93	0/1:322:171,149:171:6060:149:5265:-369.547,0,-448.809	0/1:212:123,89:123:4382:89:3168:-217.659,0,-330.736	0/1:95:60,35:60:2098:35:1244:-78.7253,0,-160.489	0/1:140:85,55:85:3039:55:1932:-128.105,0,-231.595	1/1:57:5,52:5:180:52:1842:-142.252,-0.606645,0	0/1:112:84,28:84:2964:28:1008:-55.6535,0,-233.275	0/1:165:118,47:118:4178:47:1669:-98.3337,0,-326.536	0/1:382:171,210:171:6003:210:7454:-545.811,0,-425.33	0/1:273:150,123:150:5359:123:4369:-305.017,0,-400.262	0/1:214:125,89:125:4433:89:3192:-219.924,0,-334.721	0/1:269:146,123:146:5118:123:4392:-310.224,0,-378.77	0/1:264:233,31:233:8323:31:1099:-18.1746,0,-669.522	0/1:90:62,28:62:2195:28:1000:-61.4245,0,-170.72	0/1:131:93,38:93:3295:38:1360:-81.0091,0,-257.334	0/1:163:115,48:115:4104:48:1709:-102.067,0,-320.479	0/1:107:74,33:74:2623:33:1166:-71.1823,0,-204.108	0/1:115:79,36:79:2782:36:1280:-78.5037,0,-216.001	0/1:158:117,41:117:4156:41:1447:-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chr11	594845	.	G	C	8035.79	PASS	AB=0.432677;ABP=50.961;AC=49;AF=0.266304;AN=184;AO=531;CIGAR=1X;DP=2249;DPB=2249;DPRA=1.13393;EPP=1156.06;EPPR=3727.09;GTI=4;LEN=1;MEANALT=1.05882;MQM=59.7589;MQMR=59.9551;NS=92;NUMALT=1;ODDS=0.0460871;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=19033;QR=61001;RO=1715;RPL=0;RPP=1156.06;RPPR=3727.09;RPR=531;RUN=1;SAF=531;SAP=1156.06;SAR=0;SRF=1715;SRP=3727.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:18,3:18:629:3:108:-3.75354,0,-50.6121	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:23:8,15:8:284:15:536:-41.6511,0,-18.9797	0/1:36:17,19:17:608:19:684:-51.0509,0,-44.2149	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8171	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6206	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	0/1:34:21,13:21:752:13:468:-32.2246,0,-57.7712	0/1:22:15,7:15:525:7:252:-16.4063,0,-40.9554	0/1:17:12,5:12:432:5:180:-11.4299,0,-34.0975	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.776	0/1:35:17,18:17:612:18:644:-47.7545,0,-44.8728	0/1:19:9,10:9:309:10:356:-26.6561,0,-22.4211	0/0:27:27,0:27:927:0:0:0,-8.12781,-83.7358	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:36:15,21:15:525:21:752:-57.1407,0,-36.741	0/1:20:7,13:7:248:13:468:-36.4298,0,-16.6436	0/1:33:9,24:9:324:24:860:-67.786,0,-19.5719	0/1:28:19,9:19:680:9:324:-21.077,0,-53.1003	0/1:14:9,5:9:324:5:180:-12.333,0,-25.2914	0/0:35:35,0:35:1226:0:0:0,-10.536,-110.64	0/1:54:27,27:27:942:27:968:-71.1808,0,-68.8333	0/0:83:83,0:83:2927:0:0:0,-24.9855,-263.639	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/1:26:19,7:19:669:7:237:-13.8323,0,-52.6206	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:68:42,25:42:1508:25:900:-60.7913,0,-115.486	0/0:47:46,1:46:1622:1:36:0,-10.5501,-142.667	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:25:18,7:18:648:7:252:-15.5032,0,-51.1215	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	0/1:29:22,7:22:777:7:248:-13.9334,0,-61.5205	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7201	0/0:51:48,3:48:1709:3:108:0,-5.27736,-144.019	0/1:33:24,9:24:860:9:324:-19.5719,0,-67.7878	0/1:13:7,6:7:248:6:212:-15.5114,0,-18.7508	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:17:7,10:7:237:10:360:-27.6129,0,-16.5415	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:32:6,26:6:201:26:928:-74.2038,0,-8.78408	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:36:19,17:19:684:17:608:-44.2149,0,-51.0532	.:.:.:.:.:.:.:.	0/0:40:40,0:40:1417:0:0:0,-12.0412,-127.825	0/1:40:24,16:24:849:16:568:-39.4107,0,-64.6866	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:21:21,0:21:726:0:0:0,-6.32163,-65.656	0/1:32:21,11:21:741:11:396:-26.3451,0,-57.3786	0/1:25:12,12:12:413:12:428:-31.2723,0,-29.9147	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:29:11,18:11:396:18:648:-49.9211,0,-27.2529	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:31:24,7:24:849:7:248:-13.3323,0,-67.3959	0/1:17:15,2:15:532:2:72:-1.71921,0,-43.0956	0/1:35:27,8:27:972:8:288:-15.7267,0,-77.2572	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:44:44,0:44:1553:0:0:0,-13.2453,-140.06	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	.:.:.:.:.:.:.:.	0/1:20:9,10:9:320:10:360:-26.6649,0,-23.0601	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:48:25,23:25:881:23:828:-60.39,0,-65.1564	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/1:29:17,12:17:608:12:432:-30.4913,0,-46.3222	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:30:19,11:19:684:11:396:-26.8165,0,-52.8594	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852
chr11	594879	.	T	C	35405.4	PASS	AB=0.563891;ABP=46.0191;AC=135;AF=0.733696;AN=184;AO=1700;CIGAR=1X;DP=2233;DPB=2233;DPRA=0;EPP=3625.35;EPPR=1056.35;GTI=3;LEN=1;MEANALT=1.01087;MQM=59.9624;MQMR=59.8026;NS=92;NUMALT=1;ODDS=0.142936;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60517;QR=19057;RO=532;RPL=1692;RPP=3625.35;RPPR=1056.35;RPR=8;RUN=1;SAF=1700;SAP=3694.51;SAR=0;SRF=532;SRP=1158.23;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:3,17:3:108:17:604:-48.67,0,-4.05457	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5887	0/1:36:19,17:19:680:17:595:-43.0396,0,-50.6897	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	0/1:34:13,21:13:468:21:744:-57.0493,0,-32.2246	0/1:22:7,15:7:252:15:532:-41.5904,0,-16.4063	0/1:17:5,12:5:176:12:432:-34.0975,0,-11.0628	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:38:0,38:0:0:38:1342:-121.079,-11.4391,0	0/1:34:18,16:18:639:16:576:-41.9353,0,-47.6032	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0109	1/1:24:0,24:0:0:24:854:-77.1798,-7.22472,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/1:34:19,15:19:675:15:540:-38.7015,0,-50.8419	0/1:20:13,7:13:460:7:252:-17.0084,0,-35.7055	0/1:34:26,8:26:936:8:288:-16.0324,0,-74.3235	0/1:29:10,19:10:352:19:680:-52.7993,0,-23.2883	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.333	1/1:34:0,34:0:0:34:1203:-108.575,-10.235,0	0/1:52:27,25:27:972:25:883:-64.1339,0,-72.1434	1/1:85:0,85:0:0:85:3035:-273.324,-25.5876,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:59:0,59:0:0:59:2099:-189.179,-17.7608,0	0/1:26:7,19:7:252:19:684:-53.977,0,-15.2022	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:67:24,43:24:864:43:1529:-117.732,0,-57.9126	1/1:47:0,46:0:0:46:1640:-147.529,-13.8474,0	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:25:7,18:7:252:18:636:-50.0377,0,-15.5032	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:38:0,38:0:0:38:1347:-121.529,-11.4391,0	1/1:17:0,17:0:0:17:597:-54.0561,-5.11751,0	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:28:6,22:6:216:22:784:-62.4551,0,-11.3617	0/1:31:14,17:14:500:17:612:-46.0815,0,-36.0042	1/1:50:3,47:3:108:47:1667:-140.241,-4.97633,0	0/1:33:10,23:10:351:23:809:-63.1943,0,-21.9927	0/1:12:5,7:5:176:7:244:-18.6871,0,-12.5727	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95157	0/1:16:9,7:9:324:7:244:-17.4829,0,-24.6755	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:33:27,6:27:972:6:208:-9.12509,0,-77.8624	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:36:18,18:18:644:18:648:-47.8148,0,-47.4535	.:.:.:.:.:.:.:.	1/1:37:0,37:0:0:37:1295:-116.85,-11.1381,0	0/1:41:16,25:16:576:25:884:-67.5361,0,-39.8328	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:29:9,20:9:320:20:712:-55.6768,0,-20.4101	0/1:25:12,13:12:432:13:468:-34.9323,0,-31.6931	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	0/1:29:18,11:18:648:11:396:-27.2529,0,-49.9211	0/1:8:1,7:1:36:7:239:-19.4345,0,-1.19003	0/1:31:7,24:7:252:24:842:-66.7651,0,-13.697	0/1:17:2,15:2:72:15:540:-43.819,0,-1.71921	0/1:35:8,27:8:284:27:968:-76.9013,0,-15.3626	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	.:.:.:.:.:.:.:.	0/1:20:10,10:10:360:10:360:-26.7155,0,-26.7237	1/1:48:0,48:0:0:48:1669:-150.495,-14.4494,0	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	0/1:49:24,25:24:864:25:883:-65.037,0,-63.3274	0/1:16:5,11:5:176:11:396:-31.1663,0,-11.3685	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:29:12,17:12:428:17:608:-46.3222,0,-30.1289	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:29:10,19:10:356:19:676:-52.4381,0,-23.5205	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:44:0,44:0:0:44:1546:-139.428,-13.2453,0
chr11	594885	.	T	C	7794.75	PASS	AB=0.439406;ABP=41.694;AC=49;AF=0.266304;AN=184;AO=536;CIGAR=1X;DP=2247;DPB=2247;DPRA=1.08012;EPP=1166.92;EPPR=3657.85;GTI=3;LEN=1;MEANALT=1;MQM=59.7537;MQMR=59.9725;NS=92;NUMALT=1;ODDS=1.06545;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=18766;QR=61143;RO=1711;RPL=536;RPP=1166.92;RPPR=3657.85;RPR=0;RUN=1;SAF=536;SAP=1166.92;SAR=0;SRF=1711;SRP=3718.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:18,3:18:648:3:108:-3.75354,0,-52.3303	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:23:8,15:8:288:15:527:-40.8365,0,-19.3437	0/1:36:17,19:17:612:19:652:-48.1611,0,-44.5764	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:34:21,13:21:747:13:464:-31.8625,0,-57.3193	0/1:21:14,7:14:491:7:248:-16.3426,0,-38.1995	0/1:16:11,5:11:396:5:165:-10.3524,0,-31.1663	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.529	0/1:35:17,18:17:608:18:616:-45.2228,0,-44.5113	0/1:19:9,10:9:320:10:356:-26.6561,0,-23.4228	0/0:27:27,0:27:944:0:0:0,-8.12781,-85.2713	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:15:9,6:9:320:6:195:-13.3543,0,-24.6269	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:14:10,4:10:360:4:135:-8.26809,0,-28.5299	0/1:34:15,19:15:536:19:654:-48.9166,0,-38.3398	0/1:20:7,13:7:252:13:464:-36.0676,0,-17.0084	0/1:35:9,26:9:324:26:917:-72.309,0,-18.9698	0/1:29:19,10:19:680:10:356:-23.6514,0,-52.7993	0/1:14:9,5:9:324:5:180:-12.333,0,-25.2914	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:54:26,28:26:932:28:991:-73.247,0,-67.9423	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.134	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:25:17,8:17:604:8:284:-18.3776,0,-47.1649	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:67:42,25:42:1489:25:871:-58.5355,0,-114.134	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:25:18,7:18:640:7:252:-15.5032,0,-50.4017	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:21:8,13:8:284:13:425:-32.2403,0,-19.5817	0/1:29:22,7:22:792:7:243:-13.4767,0,-62.8758	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/0:51:48,3:48:1701:3:104:0,-5.64972,-143.671	0/1:33:23,10:23:824:10:332:-20.2661,0,-64.5493	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/1:12:7,5:7:252:5:171:-12.1131,0,-19.4166	0/1:5:3,2:3:108:2:72:-5.32911,0,-8.57002	0/1:16:7,9:7:252:9:324:-24.6755,0,-18.2125	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:33:6,27:6:216:27:959:-76.6899,0,-9.85652	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:37:19,18:19:680:18:644:-47.1525,0,-50.3911	.:.:.:.:.:.:.:.	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/1:41:25,16:25:896:16:561:-38.4749,0,-68.6181	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:32:21,11:21:756:11:392:-25.9824,0,-58.7343	0/1:25:13,12:13:464:12:432:-31.6931,0,-34.5702	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:29:11,18:11:396:18:622:-47.5713,0,-27.2529	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:31:24,7:24:840:7:243:-12.8756,0,-66.5835	0/1:17:15,2:15:536:2:68:-1.3402,0,-43.4573	0/1:36:28,8:28:995:8:288:-15.4257,0,-79.0263	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	.:.:.:.:.:.:.:.	0/1:19:9,10:9:324:10:351:-26.2071,0,-23.7863	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:47:23,24:23:824:24:832:-61.0409,0,-60.3349	0/1:16:11,5:11:396:5:172:-11.0015,0,-31.1663	0/1:8:6,2:6:207:2:68:-4.04947,0,-16.5587	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:28:16,12:16:572:12:424:-30.0676,0,-43.3846	0/1:18:9,9:9:324:9:315:-23.2687,0,-24.0873	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:30:19,11:19:684:11:372:-24.6376,0,-52.8594	0/1:22:7,15:7:252:15:517:-40.2319,0,-16.4063	0/0:19:19,0:19:667:0:0:0,-5.71957,-60.3546	0/0:45:45,0:45:1594:0:0:0,-13.5463,-143.749
chr11	595671	.	C	T	70429.6	PASS	AB=0.427649;ABP=157.919;AC=129;AF=0.693548;AN=186;AO=3523;CIGAR=1X;DP=5485;DPB=5485;DPRA=13.3724;EPP=7653.11;EPPR=4259.1;GTI=3;LEN=1;MEANALT=1.02198;MQM=59.9813;MQMR=59.8923;NS=93;NUMALT=1;ODDS=0.438717;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125930;QR=70183;RO=1960;RPL=0;RPP=7653.11;RPPR=4259.1;RPR=3523;RUN=1;SAF=3523;SAP=7653.11;SAR=0;SRF=1960;SRP=4259.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:31,19:31:1112:19:684:-46.8388,0,-85.3398	0/1:43:31,12:31:1112:12:428:-25.9145,0,-87.4471	0/1:95:45,50:45:1620:50:1792:-132.965,0,-117.492	0/1:117:80,36:80:2860:36:1279:-80.0964,0,-222.356	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:44:0,44:0:0:44:1550:-139.788,-13.2453,0	0/1:46:26,20:26:932:20:706:-50.0159,0,-70.3515	0/1:96:69,27:69:2480:27:968:-58.5385,0,-194.554	0/1:69:45,24:45:1616:24:864:-57.3115,0,-124.959	0/1:59:31,28:31:1116:28:1004:-72.9151,0,-82.9909	1/1:31:0,31:0:0:31:1098:-99.1286,-9.33193,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	0/1:70:37,33:37:1332:33:1184:-85.7962,0,-99.1103	0/1:37:16,21:16:576:21:756:-57.2291,0,-41.0361	1/1:72:0,72:0:0:72:2579:-232.359,-21.6742,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:22:18,4:18:644:4:144:-6.69096,0,-51.6679	0/1:87:25,62:25:900:62:2224:-174.235,0,-55.1314	0/1:75:41,34:41:1460:34:1220:-87.5296,0,-109.101	0/1:47:36,11:36:1284:11:396:-21.8343,0,-101.713	0/1:77:46,31:46:1648:31:1104:-76.4913,0,-125.428	0/1:38:26,12:26:924:12:428:-27.4197,0,-72.0187	1/1:47:0,47:0:0:47:1663:-149.918,-14.1484,0	0/1:163:94,69:94:3368:69:2472:-173.666,0,-254.265	1/1:172:0,172:0:0:172:6146:-553.239,-51.7772,0	1/1:21:0,21:0:0:21:743:-67.1933,-6.32163,0	1/1:102:0,102:0:0:102:3645:-328.253,-30.7051,0	0/1:85:35,50:35:1252:50:1792:-135.975,0,-87.1699	1/1:77:0,77:0:0:77:2745:-247.291,-23.1793,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:420:-38.134,-3.61236,0	0/1:151:74,77:74:2652:77:2760:-203.186,0,-193.468	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:90:44,46:44:1576:46:1621:-119.084,0,-115.039	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:49:29,20:29:1027:20:716:-50.0172,0,-77.9917	0/1:61:35,26:35:1252:26:936:-66.1966,0,-94.6207	0/1:94:55,39:55:1976:39:1399:-97.9124,0,-149.799	1/1:68:0,68:0:0:68:2410:-217.155,-20.47,0	0/1:61:22,39:22:792:39:1400:-107.936,0,-53.2428	0/1:81:57,24:57:2032:24:860:-53.3384,0,-158.768	0/1:67:28,39:28:1004:39:1392:-105.41,0,-70.5022	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:89:49,40:49:1752:40:1432:-102.386,0,-131.158	0/1:16:7,9:7:248:9:320:-24.3259,0,-17.8477	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:106:57,49:57:2015:49:1747:-125.604,0,-149.713	1/1:16:1,15:1:36:15:532:-44.6142,-1.21821,0	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.4314	0/1:20:6,14:6:216:14:500:-39.3156,0,-13.7699	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:72:42,30:42:1512:30:1080:-75.8391,0,-114.697	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:132:0,132:0:0:132:4694:-422.619,-39.736,0	0/1:151:110,41:110:3948:41:1466:-86.7803,0,-310.049	0/1:34:20,14:20:711:14:504:-35.4631,0,-54.0806	1/1:49:0,49:0:0:49:1737:-156.613,-14.7505,0	0/1:95:59,36:59:2104:36:1292:-87.9859,0,-161.032	0/1:93:66,27:66:2360:27:972:-59.8021,0,-184.662	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5131	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:31:17,14:17:603:14:504:-36.3662,0,-45.2645	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8136	0/1:97:54,43:54:1932:43:1528:-108.613,0,-144.956	0/1:71:35,36:35:1260:36:1292:-95.2106,0,-92.3324	0/1:93:55,37:55:1976:37:1328:-91.7678,0,-150.06	1/1:108:0,108:0:0:108:3852:-346.874,-32.5112,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.1576	0/1:47:30,17:30:1076:17:608:-40.9036,0,-83.0032	1/1:52:0,52:0:0:52:1853:-167.049,-15.6536,0	1/1:111:0,111:0:0:111:3976:-358.03,-33.4143,0	0/1:47:23,24:23:828:24:860:-63.5734,0,-60.6948	0/1:64:42,22:42:1500:22:788:-51.9789,0,-116.028	0/1:42:25,17:25:896:17:612:-42.7702,0,-68.3162	1/1:100:1,99:1:36:99:3564:-317.368,-26.5047,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:68:37,31:37:1328:31:1104:-79.2006,0,-99.3522	0/1:46:24,22:24:864:22:788:-57.3974,0,-64.2352	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:63:38,25:38:1355:25:888:-61.2741,0,-103.284	0/1:49:28,21:28:996:21:756:-53.6168,0,-75.1464	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:79:1,78:1:36:78:2780:-246.614,-20.1831,0
chr11	595695	.	C	A	34514.6	PASS	AB=0.568215;ABP=141.361;AC=57;AF=0.306452;AN=186;AO=1966;CIGAR=1X;DP=5529;DPB=5529;DPRA=1.15254;EPP=4254.77;EPPR=7729.11;GTI=3;LEN=1;MEANALT=1;MQM=59.8688;MQMR=59.9781;NS=93;NUMALT=1;ODDS=0.222356;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70497;QR=127309;RO=3562;RPL=1964;RPP=4254.77;RPPR=7729.11;RPR=2;RUN=1;SAF=1966;SAP=4272.13;SAR=0;SRF=3562;SRP=7737.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:19,32:19:684:32:1144:-87.917,0,-46.5378	0/1:44:12,32:12:432:32:1148:-90.3845,0,-25.9759	0/1:94:49,45:49:1752:45:1620:-117.793,0,-129.667	0/1:118:38,80:38:1356:80:2868:-222.83,0,-86.5914	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:46:20,26:20:711:26:936:-70.7121,0,-50.4683	0/1:96:27,69:27:954:69:2463:-193.025,0,-57.2751	0/1:68:24,44:24:860:44:1584:-122.381,0,-57.2518	0/1:58:27,31:27:968:31:1112:-82.9316,0,-69.96	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.5	0/1:70:33,37:33:1171:37:1332:-99.1103,0,-84.6246	0/1:39:23,16:23:828:16:568:-39.7111,0,-63.1039	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:19:12,7:12:424:7:252:-17.3094,0,-32.7768	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/1:21:4,17:4:144:17:604:-48.369,0,-6.99199	0/1:86:61,25:61:2187:25:900:-55.4324,0,-171.206	0/1:81:38,43:38:1352:43:1548:-115.167,0,-97.5969	0/1:46:11,35:11:396:35:1260:-99.8566,0,-22.1354	0/1:77:31,46:31:1112:46:1656:-126.148,0,-77.212	0/1:37:12,25:12:432:25:885:-68.7826,0,-28.0831	0/0:46:45,1:45:1607:1:36:0,-10.2491,-141.302	0/1:165:70,95:70:2491:95:3397:-256.27,0,-174.773	0/0:173:173,0:173:6173:0:0:0,-52.0782,-555.669	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:102:102,0:102:3638:0:0:0,-30.7051,-327.625	0/1:87:52,35:52:1864:35:1256:-86.9276,0,-141.85	0/0:77:77,0:77:2754:0:0:0,-23.1793,-248.101	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	.:.:.:.:.:.:.:.	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:154:79,75:79:2836:75:2696:-196.522,0,-209.119	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8446	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:91:45,46:45:1598:46:1648:-121.214,0,-116.715	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/0:67:66,0:66:2372:0:0:0,-19.868,-213.378	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:48:20,28:20:705:28:1008:-76.5869,0,-49.3233	0/1:61:27,34:27:964:34:1224:-92.1027,0,-68.714	0/1:95:39,56:39:1404:56:2007:-152.285,0,-98.0614	0/0:71:71,0:71:2521:0:0:0,-21.3731,-227.141	0/1:62:40,22:40:1421:22:792:-52.9418,0,-109.522	0/1:83:25,58:25:896:58:2088:-163.203,0,-55.9749	0/1:68:40,28:40:1428:28:1008:-70.5617,0,-108.347	0/1:11:3,8:3:108:8:269:-21.2248,0,-6.76384	0/1:89:41,48:41:1472:48:1728:-128.978,0,-105.984	0/1:16:9,7:9:315:7:252:-18.2125,0,-23.8707	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:106:49,57:49:1744:57:2052:-153.041,0,-125.335	0/0:15:14,1:14:495:1:36:0,-0.917175,-41.2848	1/1:11:1,10:1:32:10:360:-29.5434,-0.112017,0	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:73:30,43:30:1076:43:1533:-116.283,0,-75.1777	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:133:133,0:133:4751:0:0:0,-40.037,-427.748	0/1:156:43,113:43:1544:113:4060:-318.563,0,-92.2924	0/1:34:14,20:14:500:20:720:-54.8938,0,-35.1012	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:93:35,58:35:1256:58:2072:-158.755,0,-85.3495	0/1:93:28,65:28:1004:65:2327:-181.694,0,-62.6801	0/1:15:8,7:8:288:7:252:-18.5131,0,-21.752	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/1:31:14,17:14:485:17:612:-46.0784,0,-34.645	0/1:15:8,7:8:284:7:252:-18.5126,0,-21.3879	0/1:96:42,54:42:1490:54:1915:-143.726,0,-105.494	0/1:71:37,34:37:1310:34:1224:-89.0939,0,-96.827	0/1:94:38,56:38:1360:56:2012:-153.055,0,-94.4038	0/0:108:108,0:108:3884:0:0:0,-32.5112,-349.753	0/0:60:60,0:60:2138:0:0:0,-18.0618,-192.687	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:13:4,9:4:144:9:324:-25.4333,0,-9.40023	0/1:47:17,30:17:612:30:1072:-82.6428,0,-41.265	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:111:111,0:111:3954:0:0:0,-33.4143,-356.05	0/1:48:25,23:25:900:23:828:-60.3938,0,-66.8716	0/1:64:23,41:23:828:41:1476:-113.87,0,-55.5782	0/1:43:18,25:18:633:25:900:-68.3758,0,-44.3508	0/0:103:102,1:102:3668:1:36:0,-27.4078,-326.724	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:66:30,36:30:1080:36:1292:-96.7158,0,-77.6453	0/1:47:22,25:22:792:25:892:-66.4513,0,-57.4573	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7673	0/1:64:26,38:26:923:38:1368:-104.155,0,-64.1208	0/1:50:21,29:21:756:29:1017:-76.7303,0,-53.3157	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:81:80,1:80:2837:1:36:0,-20.7852,-251.74
chr11	616111	.	C	T	82892.1	PASS	AB=0.502462;ABP=3.19204;AC=132;AF=0.702128;AN=188;AO=4064;CIGAR=1X;DP=5791;DPB=5791;DPRA=62.2581;EPP=8767.18;EPPR=3742.29;GTI=2;LEN=1;MEANALT=1.01075;MQM=58.9518;MQMR=59.9913;NS=94;NUMALT=1;ODDS=0.581991;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145098;QR=61568;RO=1726;RPL=7;RPP=8767.18;RPPR=3742.29;RPR=4057;RUN=1;SAF=0;SAP=8827.87;SAR=4064;SRF=0;SRP=3750.97;SRR=1726;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:12,20:12:432:20:720:-54.555,0,-29.5882	0/1:46:18,28:18:648:28:1004:-76.7315,0,-44.8045	0/1:96:48,48:48:1724:48:1711:-124.996,0,-126.547	0/1:128:72,56:72:2571:56:1997:-141.37,0,-193.107	1/1:28:0,28:0:0:28:1000:-89.1726,-8.42884,0	1/1:68:0,68:0:0:68:2448:-220.553,-20.47,0	0/1:70:33,37:33:1172:37:1328:-98.5758,0,-84.7154	0/1:110:59,51:59:2116:51:1807:-128.58,0,-157.595	0/1:58:37,21:37:1332:21:752:-50.5358,0,-102.723	0/1:58:27,31:27:964:31:1105:-82.0002,0,-69.6171	1/1:45:0,45:0:0:45:1608:-144.359,-13.5464,0	1/1:107:1,106:1:36:106:3750:-333.311,-28.6119,0	0/1:74:32,42:32:1140:42:1485:-111.664,0,-80.633	0/1:78:45,33:45:1603:33:1180:-83.0053,0,-121.074	1/1:75:0,75:0:0:75:2679:-240.973,-22.5773,0	1/1:59:0,59:0:0:59:2105:-189.678,-17.7608,0	0/1:33:16,17:16:576:17:608:-45.118,0,-42.241	1/1:51:0,51:0:0:51:1811:-163.202,-15.3525,0	0/1:26:12,14:12:432:14:496:-37.1368,0,-31.3944	0/1:117:54,63:54:1936:63:2260:-168.249,0,-139.296	0/1:127:67,60:67:2403:60:2160:-156.422,0,-178.295	0/1:79:53,26:53:1899:26:928:-60.0565,0,-147.406	0/1:85:46,39:46:1648:39:1391:-99.6591,0,-123.021	0/1:48:17,31:17:608:31:1111:-85.0519,0,-40.6026	1/1:47:0,47:0:0:47:1673:-145.731,-14.1484,0	0/1:124:58,66:58:2075:66:2368:-176.05,0,-149.692	1/1:43:0,43:0:0:43:1540:-138.882,-12.9443,0	1/1:29:0,29:0:0:29:1040:-93.724,-8.72987,0	1/1:78:0,78:0:0:78:2788:-247.903,-23.4803,0	0/1:76:33,43:33:1184:43:1531:-114.822,0,-83.99	1/1:76:0,76:0:0:76:2726:-245.124,-22.8783,0	1/1:8:0,8:0:0:8:288:-26.2566,-2.40824,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:27:0,27:0:0:27:949:-85.7223,-8.12781,0	0/1:141:56,85:56:2003:85:3023:-229.779,0,-138.098	1/1:108:0,108:0:0:108:3876:-348.774,-32.5112,0	1/1:44:0,44:0:0:44:1561:-140.778,-13.2453,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:98:55,43:55:1949:43:1542:-108.916,0,-146.183	1/1:25:0,25:0:0:25:896:-80.9348,-7.52575,0	1/1:116:0,116:0:0:116:4158:-374.081,-34.9195,0	1/1:41:0,41:0:0:41:1455:-128.9,-12.3422,0	0/1:41:15,26:15:525:26:924:-70.991,0,-35.2358	0/1:76:42,34:42:1508:34:1224:-87.3985,0,-113.136	0/1:67:32,35:32:1135:35:1245:-92.1284,0,-82.2891	1/1:100:0,100:0:0:100:3568:-320.298,-30.103,0	0/1:54:34,20:34:1201:20:720:-48.8625,0,-92.1319	0/1:52:30,22:30:1072:22:792:-55.8017,0,-81.1389	0/1:65:27,38:27:960:38:1368:-103.854,0,-67.1493	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:74:27,47:27:968:47:1665:-127.849,0,-65.1611	0/1:35:18,17:18:644:17:608:-44.516,0,-47.7545	1/1:20:0,20:0:0:20:708:-64.045,-6.0206,0	0/1:61:35,26:35:1240:26:932:-65.5583,0,-93.5416	1/1:65:0,65:0:0:65:2314:-208.28,-19.567,0	0/1:5:2,3:2:63:3:104:-8.19766,0,-4.478	0/1:7:1,6:1:36:6:216:-17.6693,0,-1.49106	1/1:43:0,43:0:0:43:1540:-138.796,-12.9443,0	0/1:62:33,29:33:1180:29:1022:-73.5699,0,-87.8442	0/1:9:1,8:1:36:8:288:-23.5558,0,-0.889005	1/1:92:0,91:0:0:91:3259:-293.074,-27.3937,0	0/1:86:34,52:34:1216:52:1860:-141.563,0,-83.858	0/1:46:25,21:25:896:21:756:-53.9611,0,-67.113	1/1:36:1,35:1:36:35:1231:-107.45,-7.23881,0	0/1:93:50,43:50:1775:43:1548:-111.113,0,-132.037	0/1:110:69,41:69:2448:41:1472:-99.576,0,-187.463	0/1:42:19,23:19:675:23:820:-61.2512,0,-48.4337	1/1:39:0,39:0:0:39:1395:-125.516,-11.7402,0	0/1:26:13,13:13:451:13:468:-34.6329,0,-33.0929	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:43:27,16:27:972:16:563:-36.5081,0,-74.8536	0/1:53:25,28:25:896:28:1004:-74.6996,0,-65.0058	0/1:108:44,64:44:1567:64:2280:-172.912,0,-108.81	1/1:70:0,70:0:0:70:2500:-224.628,-21.0721,0	1/1:88:0,88:0:0:88:3143:-281.949,-26.4906,0	1/1:81:2,79:2:72:79:2834:-248.319,-17.5467,0	0/1:13:9,4:9:311:4:135:-8.56912,0,-24.4103	0/1:54:28,26:28:1004:26:932:-67.931,0,-74.4202	1/1:97:0,97:0:0:97:3450:-310.21,-29.1999,0	1/1:165:0,165:0:0:165:5883:-529.08,-49.67,0	0/1:38:18,20:18:633:20:707:-52.5111,0,-45.8559	0/1:66:29,37:29:1036:37:1320:-98.7545,0,-73.6859	0/1:55:26,29:26:932:29:1044:-77.6303,0,-67.6422	1/1:92:0,92:0:0:92:3276:-294.767,-27.6948,0	1/1:21:0,21:0:0:21:748:-67.6133,-6.32163,0	0/1:53:24,29:24:841:29:1032:-77.2389,0,-60.0518	0/1:57:27,30:27:960:30:1051:-77.6537,0,-69.5576	1/1:61:0,61:0:0:61:2196:-197.903,-18.3628,0	0/1:110:53,57:53:1872:57:2012:-147.89,0,-135.643	0/1:77:46,31:46:1636:31:1103:-75.9576,0,-124.349	1/1:85:1,84:1:36:84:3000:-266.104,-21.9893,0	1/1:81:2,79:2:72:79:2832:-247.869,-17.5467,0
chr11	771884	.	T	A	55358.4	PASS	AB=0.483814;ABP=18.4051;AC=55;AF=0.292553;AN=188;AO=3281;CIGAR=1X;DP=11425;DPB=11425;DPRA=1.11561;EPP=6980.72;EPPR=17187.2;GTI=0;LEN=1;MEANALT=1.04918;MQM=59.9869;MQMR=59.9918;NS=94;NUMALT=1;ODDS=1.13253;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116990;QR=291245;RO=8140;RPL=17;RPP=6980.72;RPPR=17187.2;RPR=3264;RUN=1;SAF=3281;SAP=7127.61;SAR=0;SRF=8140;SRP=17678.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	0/1:201:97,104:97:3467:104:3657:-268.823,0,-251.735	0/1:166:79,87:79:2832:87:3116:-230.696,0,-205.147	0/1:364:181,183:181:6441:183:6476:-473.351,0,-470.203	0/0:117:117,0:117:4193:0:0:0,-35.2205,-377.549	0/0:82:80,2:80:2845:2:68:0,-18.2268,-249.83	0/1:170:101,69:101:3620:69:2484:-172.638,0,-274.83	0/1:214:103,111:103:3688:111:3973:-293.338,0,-267.702	0/1:127:72,55:72:2541:55:1976:-139.884,0,-190.707	0/1:100:48,52:48:1724:52:1849:-136.585,0,-125.342	0/0:58:57,0:57:2048:0:0:0,-17.1587,-184.232	0/1:63:32,30:32:1144:30:1076:-78.1633,0,-84.2801	0/1:44:28,16:28:1004:16:557:-37.2102,0,-77.4305	0/1:51:19,31:19:665:31:1103:-84.1686,0,-44.762	0/0:68:68,0:68:2448:0:0:0,-20.47,-220.574	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:78:44,34:44:1584:34:1208:-85.5386,0,-119.371	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:43:24,19:24:860:19:680:-48.5849,0,-64.7775	0/1:369:205,164:205:7324:164:5861:-416.518,0,-548.129	0/1:152:77,75:77:2764:75:2692:-196.768,0,-203.245	0/1:111:35,76:35:1260:76:2713:-210.997,0,-80.2912	0/1:114:62,52:62:2224:52:1853:-132.73,0,-166.107	0/1:136:72,64:72:2571:64:2270:-163.615,0,-190.699	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/1:389:210,179:210:7479:179:6394:-458.446,0,-556.052	0/0:230:230,0:230:8240:0:0:0,-69.2369,-741.61	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:419:419,0:419:15022:0:0:0,-126.132,-1351.7	0/1:172:101,71:101:3601:71:2533:-176.443,0,-272.519	0/0:216:216,0:216:7688:0:0:0,-65.0225,-691.953	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2579	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:166:90,76:90:3223:76:2736:-196.511,0,-240.32	0/0:225:225,0:225:8053:0:0:0,-67.7317,-724.731	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:216:105,111:105:3757:111:3969:-292.377,0,-273.306	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:214:214,0:214:7654:0:0:0,-64.4204,-688.893	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:74:33,41:33:1184:41:1468:-110.14,0,-84.5921	0/1:134:70,64:70:2516:64:2304:-167.282,0,-186.353	0/1:166:86,80:86:3053:80:2842:-206.045,0,-225.028	0/0:190:189,1:189:6761:1:36:0,-53.5974,-604.964	0/1:141:78,63:78:2796:63:2249:-160.226,0,-209.435	0/1:224:104,120:104:3720:120:4248:-315.066,0,-267.571	0/1:294:138,156:138:4952:156:5563:-412.288,0,-357.325	0/1:12:7,5:7:228:5:180:-12.9397,0,-17.2252	0/1:177:107,70:107:3840:70:2511:-172.96,0,-292.513	0/1:72:36,36:36:1258:36:1281:-93.9171,0,-91.8441	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:180:99,81:99:3552:81:2893:-206.419,0,-265.702	0/0:46:46,0:46:1633:0:0:0,-13.8474,-147.257	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:151:151,0:151:5403:0:0:0,-45.4555,-486.4	0/1:127:68,59:68:2444:59:2118:-152.658,0,-181.984	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:279:278,1:278:9921:1:36:0,-80.3891,-889.23	0/1:209:106,103:106:3796:103:3674:-267.946,0,-278.923	0/1:51:20,31:20:712:31:1116:-85.3992,0,-49.0541	0/0:96:95,1:95:3408:1:36:0,-25.3006,-303.336	0/1:222:121,101:121:4302:101:3587:-256.206,0,-320.527	0/1:127:61,66:61:2180:66:2352:-173.707,0,-158.235	0/1:23:12,11:12:428:11:381:-27.6969,0,-31.9351	0/0:112:111,1:111:3965:1:36:0,-30.1171,-353.442	0/1:59:31,28:31:1112:28:1004:-72.9151,0,-82.6306	0/1:24:16,8:16:576:8:273:-17.6755,0,-44.9503	0/1:107:58,49:58:2076:49:1734:-124.13,0,-154.9	0/1:71:38,33:38:1364:33:1173:-84.5024,0,-101.688	0/1:120:69,51:69:2476:51:1821:-128.046,0,-186.97	0/0:254:254,0:254:9117:0:0:0,-76.4616,-820.499	0/0:183:183,0:183:6518:0:0:0,-55.0885,-586.704	0/0:170:168,2:168:5997:2:72:0,-44.3384,-532.999	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:139:71,68:71:2544:68:2406:-174.951,0,-186.877	0/0:218:218,0:218:7820:0:0:0,-65.6245,-703.721	0/0:313:313,0:313:11197:0:0:0,-94.2224,-1007.62	0/1:95:40,55:40:1436:55:1950:-147.174,0,-100.94	0/1:59:31,28:31:1116:28:1004:-72.9151,0,-82.9909	0/1:86:43,43:43:1536:43:1533:-112.373,0,-112.645	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:64:33,30:33:1188:30:1068:-77.1075,0,-87.9039	0/1:55:28,27:28:1008:27:968:-70.8807,0,-74.4797	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:70:43,27:43:1548:27:968:-66.3653,0,-118.541	0/1:64:18,46:18:648:46:1641:-128.711,0,-39.386	0/0:214:214,0:214:7675:0:0:0,-64.4204,-690.782	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457
chr11	771923	.	C	T	124644	PASS	AB=0.487693;ABP=17.9754;AC=56;AF=0.297872;AN=188;AO=5562;CIGAR=1X;DP=18840;DPB=18840;DPRA=1.03683;EPP=12072.1;EPPR=28807.6;GTI=0;LEN=1;MEANALT=1.09231;MQM=59.9894;MQMR=59.9964;NS=94;NUMALT=1;ODDS=5.99997;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196844;QR=468915;RO=13269;RPL=3149;RPP=214.495;RPPR=1044.73;RPR=2413;RUN=1;SAF=3150;SAP=215.646;SAR=2412;SRF=7897;SRP=1046.38;SRR=5372;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:24,39:24:838:39:1346:-102.469,0,-56.7714	0/1:291:152,139:152:5395:139:4878:-351.576,0,-398.081	0/1:267:136,131:136:4815:131:4669:-339.997,0,-353.133	0/1:495:235,260:235:8292:260:9191:-678.161,0,-597.286	0/0:150:149,1:149:5277:1:36:0,-41.5562,-471.47	0/0:123:120,3:120:4204:3:108:0,-26.9515,-368.468	0/1:291:168,123:168:5941:123:4370:-305.876,0,-447.2	0/1:327:164,163:164:5742:163:5774:-421.342,0,-418.464	0/1:177:102,75:102:3638:75:2649:-185.373,0,-274.342	0/1:167:85,82:85:3043:82:2932:-213.843,0,-223.827	0/0:148:148,0:148:5240:0:0:0,-44.5524,-471.739	0/1:144:73,70:73:2574:70:2480:-180.082,0,-188.538	0/1:144:79,65:79:2810:65:2280:-162.113,0,-209.791	0/1:145:61,84:61:2137:84:2993:-225.952,0,-148.945	0/0:141:141,0:141:5026:0:0:0,-42.4452,-452.488	0/0:125:125,0:125:4410:0:0:0,-37.6287,-397.075	0/1:119:71,48:71:2535:48:1668:-114.577,0,-192.578	0/0:131:131,0:131:4642:0:0:0,-39.4349,-417.944	0/1:94:46,48:46:1630:48:1685:-123.635,0,-118.691	0/1:468:254,214:254:8915:214:7542:-537.949,0,-661.461	0/1:243:129,114:129:4553:114:4007:-287.669,0,-336.786	0/1:157:52,105:52:1832:105:3669:-283.152,0,-117.896	0/1:188:86,102:86:3047:102:3597:-267.342,0,-217.865	0/1:222:116,106:116:4113:106:3747:-270.603,0,-303.528	0/0:132:132,0:132:4647:0:0:0,-39.736,-418.395	0/1:594:298,296:298:10569:296:10480:-764.313,0,-772.32	0/0:410:410,0:410:14490:0:0:0,-123.422,-1303.86	0/0:78:78,0:78:2787:0:0:0,-23.4803,-251.07	0/0:548:548,0:548:19395:0:0:0,-164.964,-1745.12	0/1:275:142,133:142:4976:133:4722:-342.358,0,-365.207	0/0:305:304,0:304:10723:0:0:0,-91.5131,-964.631	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:43:43,0:43:1506:0:0:0,-12.9443,-135.832	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:32:30,2:30:1058:2:72:0,-2.79624,-88.6929	0/1:384:208,176:208:7400:176:6220:-444.306,0,-550.455	0/0:332:332,0:332:11766:0:0:0,-99.942,-1058.81	0/0:164:164,0:164:5798:0:0:0,-49.3689,-521.937	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:305:159,146:159:5622:146:5187:-375.157,0,-414.289	0/0:110:110,0:110:3911:0:0:0,-33.1133,-352.185	0/0:304:303,0:303:10706:0:0:0,-91.2121,-963.097	0/0:168:168,0:168:5969:0:0:0,-50.573,-537.318	0/1:154:70,84:70:2421:84:2996:-223.514,0,-171.784	0/1:215:118,96:118:4177:96:3417:-243.113,0,-311.481	0/1:287:157,129:157:5552:129:4551:-323.463,0,-413.512	0/0:287:286,1:286:10082:1:36:0,-82.7973,-903.727	0/1:233:122,111:122:4318:111:3945:-285.103,0,-318.657	0/1:338:162,176:162:5714:176:6203:-456.625,0,-412.633	0/1:348:164,184:164:5739:184:6508:-481.051,0,-411.874	0/1:16:8,8:8:284:8:271:-19.9029,0,-21.0869	0/1:317:196,121:196:6966:121:4288:-290.672,0,-531.579	0/1:102:41,59:41:1441:59:2120:-160.664,0,-99.5783	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/1:310:175,135:175:6142:135:4774:-336.5,0,-459.567	0/0:103:103,0:103:3665:0:0:0,-31.0061,-330.054	0/1:42:30,12:30:1063:12:424:-25.8532,0,-83.3376	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	0/0:200:200,0:200:7016:0:0:0,-60.206,-631.509	0/1:245:122,123:122:4282:123:4370:-319.724,0,-311.808	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	0/0:380:377,2:377:13309:2:72:0,-107.613,-1190.78	0/1:390:196,194:196:6940:194:6906:-504.21,0,-507.267	0/1:85:35,50:35:1238:50:1760:-133.093,0,-86.1353	0/0:147:146,1:146:5176:1:36:0,-40.6531,-462.383	0/1:317:174,143:174:6126:143:5015:-356.077,0,-456.018	0/1:219:94,125:94:3337:125:4447:-334.475,0,-234.622	0/1:70:41,29:41:1476:29:1040:-72.8423,0,-112.064	0/0:178:177,1:177:6305:1:36:0,-49.9851,-563.946	0/1:158:74,84:74:2615:84:3005:-223.119,0,-188.034	0/1:44:26,18:26:904:18:648:-45.4066,0,-68.4266	0/1:177:87,90:87:3065:90:3198:-234.76,0,-222.796	0/1:165:86,79:86:3065:79:2791:-201.761,0,-226.408	0/1:247:142,105:142:4946:105:3728:-261.367,0,-370.937	0/0:338:338,0:338:11956:0:0:0,-101.748,-1075.91	0/0:274:274,0:274:9677:0:0:0,-82.4822,-870.89	0/0:291:289,2:289:10231:2:72:0,-80.763,-913.89	0/1:15:9,6:9:320:6:212:-14.9093,0,-24.6269	0/1:248:128,120:128:4503:120:4262:-309.102,0,-330.783	0/0:280:280,0:280:9814:0:0:0,-84.2884,-883.142	0/0:539:538,0:538:19059:0:0:0,-161.954,-1714.62	0/1:187:89,98:89:3144:98:3489:-257.928,0,-226.894	0/1:118:65,53:65:2311:53:1874:-133.417,0,-172.729	0/1:156:84,72:84:2961:72:2555:-183.24,0,-219.764	0/0:262:262,0:262:9254:0:0:0,-78.8699,-832.841	0/0:88:88,0:88:3112:0:0:0,-26.4906,-280.307	0/1:134:66,68:66:2347:68:2397:-175.647,0,-171.151	0/1:141:67,74:67:2403:74:2625:-194.051,0,-174.081	0/0:112:112,0:112:3986:0:0:0,-33.7154,-358.931	0/1:173:102,71:102:3578:71:2509:-173.984,0,-270.152	0/1:133:34,99:34:1207:99:3466:-272.115,0,-68.8983	0/0:244:244,0:244:8558:0:0:0,-73.4513,-770.227	0/0:208:207,1:207:7317:1:36:0,-59.016,-654.987
chr11	772875	.	CTTC	CTTT,TTTT	130807	PASS	AB=0.499352,0.497279;ABP=3.02437,3.25845;AC=132,56;AF=0.702128,0.297872;AN=188;AO=4278,1923;CIGAR=3M1X,1X2M1X;DP=6233;DPB=6237;DPRA=22.3297,1.15319;EPP=9283.89,4178.75;EPPR=20.3821;GTI=2;LEN=1,4;MEANALT=1.83871,2.14286;MQM=59.9963,59.8877;MQMR=60;NS=94;NUMALT=2;ODDS=0.115684;PAIRED=0,0;PAIREDR=0;PAO=6.5,6.5;PQA=176,176;PQR=0;PRO=0;QA=153309,68001;QR=275;RO=8;RPL=0,0;RPP=9292.57,4178.75;RPPR=20.3821;RPR=4278,1923;RUN=1,1;SAF=4277,1923;SAP=9283.89,4178.75;SAR=1,0;SRF=8;SRP=20.3821;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:19:0,10,9:0:0:10,9:360,313:-55.1772,-25.7966,-22.7863,-29.734,0,-27.0247	1/2:64:0,27,37:0:0:27,37:972,1304:-185.834,-106.521,-98.3929,-79.6701,0,-68.532	1/2:89:0,58,31:0:0:58,31:2080,1104:-259.992,-90.3387,-72.8789,-170.011,0,-160.679	1/2:181:3,101,77:3:108:101,77:3612,2723:-506.587,-212.963,-191.371,-285.71,0,-271.343	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/2:58:0,34,24:0:0:34,24:1216,863:-169.921,-70.7677,-60.5327,-99.5115,0,-92.2868	1/2:60:0,31,29:0:0:31,29:1112,1023:-174.349,-83.6449,-74.3129,-91.0594,0,-82.3295	1/2:34:0,19,15:0:0:19,15:680,534:-99.3312,-43.8783,-38.1587,-55.8096,0,-51.2941	1/2:73:0,44,29:0:0:44,29:1569,1025:-211.732,-83.8322,-70.5869,-128.254,0,-119.524	1/1:58:0,57,0:0:0:57,0:2043,0:-183.781,-17.1587,0,-183.781,-17.1587,-183.781	1/2:77:1,31,44:1:29:31,44:1098,1552:-213.234,-124.092,-117.067,-87.1633,0,-76.2247	1/2:65:0,24,41:0:0:24,41:856,1407:-184.356,-114.571,-107.346,-70.1364,0,-57.7942	1/2:79:0,40,39:0:0:40,39:1436,1389:-230.28,-113.14,-101.099,-117.496,0,-105.756	1/1:41:0,41,0:0:0:41,0:1467,0:-132.325,-12.3422,0,-132.325,-12.3422,-132.325	1/1:69:0,69,0:0:0:69,0:2480,0:-223.453,-20.7711,0,-223.453,-20.7711,-223.453	1/2:40:0,22,18:0:0:22,18:788,639:-116.684,-52.4183,-45.7957,-64.6221,0,-59.2036	1/1:29:2,27,0:2:66:27,0:968,0:-81.1694,-2.46192,0,-81.7715,-8.12781,-87.1055	1/2:26:0,14,12:0:0:14,12:504,430:-76.5526,-35.4278,-31.2134,-41.4837,0,-37.8713	1/2:100:0,59,41:0:0:59,41:2104,1446:-289.605,-118.093,-100.332,-171.866,0,-159.524	1/2:150:0,74,76:0:0:74,76:2648,2711:-437.228,-221.295,-199.019,-216.231,0,-193.353	1/2:67:0,22,45:0:0:22,45:765,1591:-192.129,-129.933,-123.31,-62.5451,0,-48.9987	1/2:47:0,26,21:0:0:26,21:936,751:-137.969,-61.5948,-53.768,-76.7327,0,-70.4111	1/2:20:0,9,11:0:0:9,11:320,392:-58.3863,-32.3089,-29.5997,-26.4331,0,-23.1218	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/2:179:0,91,88:0:0:91,88:3268,3106:-519.866,-253.276,-225.883,-266.946,0,-240.455	1/1:148:1,145,0:1:36:145,0:5196,0:-464.172,-40.712,0,-464.473,-43.6494,-467.411	1/1:25:1,24,0:1:36:24,0:864,0:-74.4843,-3.92748,0,-74.7853,-7.22472,-77.7227	1/1:186:0,184,0:0:0:184,0:6581,0:-592.129,-55.3895,0,-592.129,-55.3895,-592.129	1/2:137:0,93,43:0:0:93,43:3333,1531:-396.666,-124.832,-96.8366,-271.889,0,-258.945	1/1:48:0,48,0:0:0:48,0:1720,0:-155.086,-14.4494,0,-155.086,-14.4494,-155.086	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:147:0,67,80:0:0:67,80:2404,2847:-428.476,-232.385,-212.216,-196.447,0,-172.365	1/1:89:0,89,0:0:0:89,0:3204,0:-288.403,-26.7917,0,-288.403,-26.7917,-288.403	1/1:59:0,58,0:0:0:58,0:2084,0:-187.559,-17.4597,0,-187.559,-17.4597,-187.559	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/2:124:0,68,55:0:0:68,55:2440,1943:-357.385,-158.354,-137.884,-199.153,0,-182.596	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:74:0,74,0:0:0:74,0:2656,0:-239.286,-22.2762,0,-239.286,-22.2762,-239.286	1/1:45:0,44,0:0:0:44,0:1580,0:-142.132,-13.2453,0,-142.132,-13.2453,-142.132	1/2:39:0,18,21:0:0:18,21:648,753:-114.647,-61.7747,-56.3562,-53.231,0,-46.9094	1/2:51:0,30,21:0:0:30,21:1080,747:-149.358,-61.2334,-52.2025,-88.4823,0,-82.1607	1/2:48:0,21,27:0:0:21,27:756,957:-140.006,-78.3173,-71.9957,-62.0456,0,-53.9178	1/1:86:0,85,0:0:0:85,0:3052,0:-274.549,-25.5876,0,-274.549,-25.5876,-274.549	1/2:51:0,30,21:0:0:30,21:1080,744:-149.087,-60.9613,-51.9304,-88.4823,0,-82.1607	1/2:150:0,66,84:0:0:66,84:2361,2982:-435.849,-243.326,-223.458,-192.879,0,-167.593	1/2:70:0,34,35:0:0:34,35:1224,1234:-200.491,-100.613,-90.3778,-100.018,0,-89.4817	1/2:9:0,3,6:0:0:3,6:104,201:-25.0686,-16.6115,-15.7084,-8.79971,0,-6.99353	1/2:77:0,37,40:0:0:37,40:1328,1407:-223.209,-114.881,-103.742,-108.684,0,-96.6429	1/2:69:0,35,34:0:0:35,34:1252,1184:-198.722,-96.6254,-86.0894,-102.449,0,-92.214	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:110:0,40,70:0:0:40,70:1427,2464:-317.27,-200.94,-188.899,-116.685,0,-95.6127	1/1:22:0,21,0:0:0:21,0:756,0: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chr11	772980	.	G	A	28718.9	PASS	AB=0.488656;ABP=6.85301;AC=54;AF=0.3;AN=180;AO=1682;CIGAR=1X;DP=5554;DPB=5554;DPRA=1.11594;EPP=3638.08;EPPR=8400.1;GTI=0;LEN=1;MEANALT=1;MQM=60;MQMR=59.9979;NS=90;NUMALT=1;ODDS=0.713711;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60237;QR=138435;RO=3871;RPL=14;RPP=3534.84;RPPR=8124.59;RPR=1668;RUN=1;SAF=12;SAP=3551.94;SAR=1670;SRF=32;SRP=8133.13;SRR=3839;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:25,14:25:900:14:504:-33.9579,0,-69.5808	0/1:38:26,12:26:936:12:428:-27.4197,0,-73.1203	0/1:103:50,53:50:1796:53:1889:-139.28,0,-130.916	0/1:108:66,42:66:2353:42:1508:-103.503,0,-179.516	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:52:20,32:20:716:32:1152:-88.3366,0,-49.1142	0/1:92:44,48:44:1576:48:1724:-127.751,0,-114.437	0/1:78:32,46:32:1152:46:1644:-124.768,0,-80.5098	0/1:92:40,52:40:1436:52:1867:-140.614,0,-101.843	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:80:39,41:39:1395:41:1459:-107.523,0,-101.766	0/1:66:24,42:24:860:42:1504:-115.787,0,-57.8539	0/1:51:27,24:27:972:24:851:-61.5569,0,-72.4454	0/0:55:55,0:55:1952:0:0:0,-16.5566,-175.953	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/1:30:18,12:18:648:12:428:-29.8279,0,-49.621	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:42:19,23:19:684:23:820:-61.4793,0,-49.2471	0/1:125:56,69:56:2016:69:2476:-185.464,0,-144.084	0/1:65:25,40:25:896:40:1440:-110.331,0,-61.3934	0/1:61:46,15:46:1644:15:532:-29.8503,0,-129.886	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/0:31:30,1:30:1080:1:36:0,-5.73365,-93.915	0/1:147:91,56:91:3214:56:1992:-135.301,0,-245.228	0/0:142:142,0:142:5087:0:0:0,-42.7463,-457.973	0/0:45:45,0:45:1592:0:0:0,-13.5463,-143.568	0/0:128:127,1:127:4556:1:36:0,-34.9336,-406.607	0/1:81:48,33:48:1716:33:1184:-82.4849,0,-130.342	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8052	.:.:.:.:.:.:.:.	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	.:.:.:.:.:.:.:.	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:225:118,107:118:4222:107:3829:-277.073,0,-312.427	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	.:.:.:.:.:.:.:.	0/1:106:58,48:58:2072:48:1701:-121.465,0,-154.842	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:62:62,0:62:2210:0:0:0,-18.6639,-199.164	0/0:44:44,0:44:1575:0:0:0,-13.2453,-142.041	0/1:50:20,30:20:720:30:1056:-80.2966,0,-50.0773	0/1:52:17,35:17:608:35:1252:-97.3315,0,-39.3985	0/1:56:36,20:36:1283:20:720:-48.2711,0,-98.9149	0/0:90:90,0:90:3195:0:0:0,-27.0927,-287.772	0/1:58:30,28:30:1080:28:1004:-73.2161,0,-80.0535	0/1:90:45,45:45:1612:45:1610:-118.097,0,-118.277	0/1:55:15,40:15:521:40:1436:-112.981,0,-30.6597	0/1:4:3,1:3:99:1:36:-2.39415,0,-8.03246	0/1:46:23,23:23:828:23:824:-60.6359,0,-60.9967	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/1:67:27,40:27:955:40:1440:-109.729,0,-66.0958	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	.:.:.:.:.:.:.:.	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:42:42,0:42:1482:0:0:0,-12.6433,-133.673	0/1:86:55,31:55:1972:31:1112:-74.5028,0,-151.866	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:183:183,0:183:6514:0:0:0,-55.0885,-586.345	0/1:97:57,40:57:2048:40:1432:-99.9777,0,-155.392	0/1:55:24,31:24:847:31:1108:-83.4743,0,-59.9921	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:78:34,44:34:1207:44:1565:-117.659,0,-85.4549	0/1:48:17,31:17:612:31:1116:-86.3023,0,-40.964	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1277	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	0/1:60:35,25:35:1260:25:896:-62.8986,0,-95.6437	0/1:86:48,38:48:1728:38:1368:-97.5322,0,-129.917	0/1:60:36,24:36:1296:24:864:-60.0208,0,-98.8821	0/0:140:140,0:140:5021:0:0:0,-42.1442,-452.034	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:23:13,10:13:460:10:360:-25.8206,0,-34.8117	0/1:43:24,19:24:864:19:684:-48.946,0,-65.1383	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/0:137:136,0:136:4851:0:0:0,-40.9401,-436.383	0/1:52:31,21:31:1116:21:756:-52.7137,0,-85.0981	0/1:58:31,27:31:1116:27:972:-70.3382,0,-83.292	0/1:48:23,25:23:828:25:900:-66.8716,0,-60.3947	0/0:150:150,0:150:5361:0:0:0,-45.1545,-482.621	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/1:92:52,40:52:1863:40:1436:-101.843,0,-140.254	0/1:66:33,33:33:1188:33:1184:-87.0003,0,-87.3606	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:75:44,31:44:1580:31:1106:-77.2726,0,-119.914	0/1:102:32,70:32:1134:70:2512:-195.627,0,-71.6622	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:92:92,0:92:3294:0:0:0,-27.6948,-296.678
chr11	775673	.	G	A	31287.9	PASS	AB=0.489257;ABP=6.88275;AC=55;AF=0.292553;AN=188;AO=1899;CIGAR=1X;DP=6044;DPB=6044;DPRA=1.4245;EPP=4126.64;EPPR=8992.91;GTI=2;LEN=1;MEANALT=1.07018;MQM=60;MQMR=59.9949;NS=94;NUMALT=1;ODDS=0.422602;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67621;QR=147037;RO=4140;RPL=0;RPP=4126.64;RPPR=8992.91;RPR=1899;RUN=1;SAF=0;SAP=4126.64;SAR=1899;SRF=0;SRP=8992.91;SRR=4140;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:27,24:27:947:24:864:-62.73,0,-70.1912	0/1:26:9,17:9:324:17:612:-47.5867,0,-21.6791	0/1:93:50,43:50:1783:43:1523:-109.365,0,-132.756	0/1:150:65,85:65:2327:85:2991:-224.265,0,-164.535	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8032	0/1:56:31,25:31:1112:25:900:-64.4633,0,-83.5337	0/1:72:48,24:48:1692:24:860:-56.0477,0,-130.889	0/1:96:56,40:56:2004:40:1415:-98.7477,0,-151.735	0/1:64:21,43:21:752:43:1542:-119.807,0,-48.7403	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/1:75:34,41:34:1185:41:1455:-108.668,0,-84.3752	0/1:62:28,34:28:996:34:1205:-90.0914,0,-71.291	0/1:46:24,22:24:856:22:767:-55.502,0,-63.5137	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:18:6,12:6:212:12:428:-33.4403,0,-14.0063	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:36:18,18:18:640:18:644:-47.4535,0,-47.0922	0/1:95:50,45:50:1788:45:1591:-114.882,0,-132.605	0/1:127:64,63:64:2264:63:2250:-164.532,0,-165.79	0/1:54:21,33:21:756:33:1180:-90.2524,0,-52.1116	0/1:68:34,34:34:1207:34:1209:-88.6441,0,-88.4652	0/1:57:30,27:30:1059:27:972:-70.6392,0,-78.4617	0/0:96:96,0:96:3404:0:0:0,-28.8989,-306.575	0/1:160:89,71:89:3169:71:2544:-181.046,0,-237.269	0/0:158:158,0:158:5605:0:0:0,-47.5627,-504.504	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:174:174,0:174:6194:0:0:0,-52.3792,-557.561	0/1:82:48,34:48:1683:34:1212:-84.7019,0,-127.069	0/0:60:60,0:60:2117:0:0:0,-18.0618,-190.797	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:94:42,52:42:1478:52:1829:-136.591,0,-105.014	0/0:101:101,0:101:3578:0:0:0,-30.404,-322.227	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:171:91,80:91:3255:80:2859:-206.071,0,-241.694	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/0:66:66,0:66:2336:0:0:0,-19.868,-210.498	0/0:51:50,0:50:1772:0:0:0,-15.0515,-159.401	0/1:27:16,11:16:572:11:387:-27.0381,0,-43.6856	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/1:89:50,39:50:1792:39:1392:-98.7873,0,-134.771	0/0:87:84,3:84:2982:3:108:0,-16.1144,-258.538	0/1:84:55,29:55:1919:29:1029:-67.6346,0,-147.695	0/1:88:51,37:51:1815:37:1318:-92.431,0,-137.14	0/1:95:52,43:52:1831:43:1539:-110.204,0,-136.469	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:182:100,82:100:3562:82:2935:-209.596,0,-266.001	0/1:42:25,17:25:872:17:604:-42.0473,0,-66.1504	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:95:42,53:42:1481:53:1889:-141.689,0,-104.984	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/1:67:31,36:31:1116:36:1283:-95.6028,0,-80.5803	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:143:143,0:143:5086:0:0:0,-43.0473,-457.884	0/1:160:81,78:81:2890:78:2776:-201.856,0,-212.112	0/1:50:23,27:23:808:27:953:-71.0318,0,-57.9886	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:93:37,56:37:1332:56:2000:-152.278,0,-92.1866	0/1:115:46,69:46:1604:69:2471:-188.025,0,-110.025	0/1:37:16,21:16:563:21:756:-57.2291,0,-39.8611	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/1:35:18,17:18:630:17:605:-44.2445,0,-46.4886	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:92:51,40:51:1824:40:1416:-99.9834,0,-136.688	0/1:104:38,66:38:1318:66:2357:-181.08,0,-87.608	0/1:121:63,58:63:2232:58:2043:-147.714,0,-164.717	0/0:129:128,1:128:4558:1:36:0,-35.2346,-406.787	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:91:44,47:44:1563:47:1692:-125.173,0,-113.567	0/0:69:68,1:68:2396:1:36:0,-17.1728,-212.298	0/0:163:163,0:163:5785:0:0:0,-49.0679,-520.766	0/1:43:20,23:20:688:23:820:-61.1782,0,-49.2932	0/1:39:24,14:24:860:14:491:-32.7228,0,-65.9229	0/1:38:16,22:16:576:22:776:-58.7219,0,-40.7358	0/0:108:108,0:108:3830:0:0:0,-32.5112,-344.896	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/1:46:29,16:29:1036:16:576:-38.3722,0,-79.754	0/1:80:47,33:47:1672:33:1174:-81.8834,0,-126.685	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:90:58,32:58:2040:32:1140:-75.8165,0,-156.777	0/1:45:16,29:16:572:29:1019:-78.4749,0,-38.2671	0/0:93:93,0:93:3306:0:0:0,-27.9958,-297.759	0/0:78:78,0:78:2773:0:0:0,-23.4803,-249.81
chr11	948173	.	CGAA	CGAC,TGAC	187119	PASS	AB=0.479162,0.517599;ABP=20.4763,15.4685;AC=137,49;AF=0.736559,0.263441;AN=186;AO=6335,2409;CIGAR=3M1X,1X2M1X;DP=8791;DPB=8792.5;DPRA=95.5435,1.1797;EPP=13663.9,5225.41;EPPR=16.0391;GTI=2;LEN=1,4;MEANALT=2,2.32143;MQM=59.9893,59.8564;MQMR=60;NS=93;NUMALT=2;ODDS=0.082158;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=88,88;PQR=0;PRO=2;QA=226580,84814;QR=188;RO=6;RPL=11,1;RPP=13663.9,5225.41;RPPR=16.0391;RPR=6324,2408;RUN=1,1;SAF=6335,2409;SAP=13759.3,5234.09;SAR=0,0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:65:0,65,0:0:0:65,0:2308,0:-207.981,-19.567,0,-207.981,-19.567,-207.981	1/2:113:0,49,63:0:0:49,63:1756,2185:-320.752,-177.532,-162.781,-143.214,0,-124.249	1/1:117:0,116,1:0:0:116,1:4169,29:-375.1,-34.9195,0,-372.792,-32.3209,-372.491	1/2:199:0,101,96:0:0:101,96:3624,3391:-571.809,-276.203,-245.799,-295.655,0,-266.756	1/1:69:0,69,0:0:0:69,0:2466,0:-222.194,-20.7711,0,-222.194,-20.7711,-222.194	1/1:70:0,70,0:0:0:70,0:2508,0:-225.972,-21.0721,0,-225.972,-21.0721,-225.972	1/1:230:0,224,4:0:0:224,4:7989,144:-718.691,-67.4307,0,-706.941,-55.6444,-705.737	1/1:70:0,68,0:0:0:68,0:2432,0:-218.776,-20.47,0,-218.776,-20.47,-218.776	1/2:122:0,60,61:0:0:60,61:2156,2171:-352.819,-176.932,-158.87,-175.885,0,-157.522	1/1:149:0,149,0:0:0:149,0:5327,0:-479.565,-44.8535,0,-479.565,-44.8535,-479.565	1/1:46:0,45,0:0:0:45,0:1616,0:-145.37,-13.5464,0,-145.37,-13.5464,-145.37	1/2:78:0,40,38:0:0:40,38:1440,1329:-225.971,-108.469,-96.4274,-117.857,0,-106.417	1/2:67:0,31,36:0:0:31,36:1116,1283:-195.998,-104.936,-95.6042,-91.4198,0,-80.5827	1/1:51:0,51,0:0:0:51,0:1828,0:-164.801,-15.3525,0,-164.801,-15.3525,-164.801	1/1:62:1,59,1:1:36:59,1:2112,36:-186.751,-14.8234,0,-184.114,-14.8234,-186.751	1/1:40:0,40,0:0:0:40,0:1431,0:-129.087,-12.0412,0,-129.087,-12.0412,-129.087	1/2:75:0,38,37:0:0:38,37:1346,1306:-216.277,-106.632,-95.1925,-109.941,0,-98.8026	1/2:51:0,23,26:0:0:23,26:820,936:-143.286,-76.4424,-69.5187,-66.9082,0,-59.0814	1/2:44:0,19,25:0:0:19,25:676,880:-127.085,-71.991,-66.2714,-55.4484,0,-47.9227	1/2:236:0,130,106:0:0:130,106:4660,3687:-680.191,-300.116,-260.982,-380.427,0,-348.518	1/1:167:0,167,0:0:0:167,0:5959,0:-536.419,-50.272,0,-536.419,-50.272,-536.419	1/2:123:0,44,79:0:0:44,79:1576,2789:-356,-227.47,-214.224,-128.886,0,-105.105	1/2:44:0,23,20:0:0:23,20:828,706:-125.019,-57.4532,-50.5296,-67.618,0,-61.5974	1/2:138:1,91,45:1:36:91,45:3252,1578:-389.596,-124.739,-100.283,-262.264,0,-251.655	1/1:85:0,84,0:0:0:84,0:3012,0:-270.951,-25.2865,0,-270.951,-25.2865,-270.951	1/2:313:0,146,166:0:0:146,166:5228,5838:-901.557,-475.209,-431.259,-426.343,0,-376.372	1/1:248:0,246,0:0:0:246,0:8797,0:-791.412,-74.0534,0,-791.412,-74.0534,-791.412	1/1:41:0,41,0:0:0:41,0:1476,0:-133.136,-12.3422,0,-133.136,-12.3422,-133.136	1/1:258:1,255,0:1:31:255,0:9136,0:-819.149,-74.2617,0,-819.45,-76.7627,-821.938	1/2:89:0,46,43:0:0:46,43:1640,1485:-254.681,-120.99,-107.143,-134.041,0,-121.097	1/1:126:0,124,0:0:0:124,0:4440,0:-399.509,-37.3277,0,-399.509,-37.3277,-399.509	1/2:7:0,5,2:0:0:5,2:180,71:-20.8306,-6.14,-4.63485,-15.0469,0,-14.4449	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	.:.:.:.:.:.:.:.	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:204:0,82,122:0:0:82,122:2928,4335:-592.26,-353.545,-328.861,-239.071,0,-202.345	1/2:126:0,63,63:0:0:63,63:2260,2248:-367.958,-183.618,-164.653,-184.698,0,-165.733	1/1:72:0,70,0:0:0:70,0:2498,0:-224.626,-21.0721,0,-224.626,-21.0721,-224.626	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:164:0,163,0:0:0:163,0:5852,0:-526.43,-49.0679,0,-526.43,-49.0679,-526.43	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/1:110:0,108,0:0:0:108,0:3864,0:-347.669,-32.5112,0,-347.669,-32.5112,-347.669	1/1:71:0,71,0:0:0:71,0:2543,0:-229.12,-21.3731,0,-229.12,-21.3731,-229.12	1/2:81:0,33,48:0:0:33,48:1180,1715:-236.344,-140.128,-130.194,-96.5157,0,-82.0663	1/2:155:0,70,85:0:0:70,85:2497,2968:-445.322,-241.766,-220.694,-203.909,0,-178.322	1/2:119:0,53,66:0:0:53,66:1900,2322:-344.338,-189.37,-173.415,-155.323,0,-135.455	1/1:124:0,122,1:0:0:122,1:4376,32:-393.673,-36.7257,0,-391.095,-34.1673,-390.794	1/2:126:0,58,66:0:0:58,66:2080,2342:-360.499,-190.845,-173.385,-169.685,0,-149.817	1/2:145:0,88,57:0:0:88,57:3144,2004:-419.803,-163.461,-136.97,-256.695,0,-239.537	1/1:47:0,47,0:0:0:47,0:1670,0:-150.585,-14.1484,0,-150.585,-14.1484,-150.585	1/2:4:0,3,1:0:0:3,1:108,35:-12.0173,-3.1976,-2.29451,-9.17208,0,-8.87105	1/1:81:0,80,0:0:0:80,0:2855,0:-256.847,-24.0824,0,-256.847,-24.0824,-256.847	1/2:38:0,18,20:0:0:18,20:648,703:-110.439,-57.5618,-52.1433,-53.2333,0,-47.2127	1/2:7:0,3,4:0:0:3,4:108,143:-20.8306,-12.0173,-11.1142,-9.17208,0,-7.96796	1/2:116:0,61,55:0:0:61,55:2146,1920:-331.209,-156.519,-138.156,-175.04,0,-158.484	1/2:43:0,19,24:0:0:19,24:684,823:-122.976,-67.1576,-61.438,-56.1708,0,-48.946	2/2:1:0,0,1:0:0:0,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chr11	948202	.	C	T	42162.5	PASS	AB=0.514731;ABP=11.7112;AC=49;AF=0.263441;AN=186;AO=2384;CIGAR=1X;DP=8780;DPB=8780;DPRA=1.055;EPP=4829.8;EPPR=13666.8;GTI=1;LEN=1;MEANALT=1.01852;MQM=59.8901;MQMR=59.993;NS=93;NUMALT=1;ODDS=0.765394;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85087;QR=228304;RO=6392;RPL=2343;RPP=4829.8;RPPR=13666.8;RPR=41;RUN=1;SAF=2384;SAP=5179.8;SAR=0;SRF=6392;SRP=13883.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:64:63,1:63:2222:1:36:0,-15.6676,-196.643	0/1:112:52,60:52:1859:60:2149:-159.942,0,-133.874	0/0:120:120,0:120:4300:0:0:0,-36.1236,-387.177	0/1:197:102,95:102:3648:95:3398:-246.731,0,-269.222	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.893	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/0:235:235,0:235:8394:0:0:0,-70.742,-755.466	0/0:71:71,0:71:2513:0:0:0,-21.3731,-226.421	0/1:123:60,63:60:2139:63:2256:-166.273,0,-155.751	0/0:148:147,0:147:5246:0:0:0,-44.2514,-471.918	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:78:40,38:40:1421:38:1352:-98.4988,0,-104.705	0/1:70:32,38:32:1143:38:1368:-102.349,0,-82.1066	0/0:51:51,0:51:1818:0:0:0,-15.3525,-163.9	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.451	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:77:38,39:38:1364:39:1387:-101.93,0,-99.8814	0/1:50:25,25:25:885:25:900:-66.2695,0,-64.915	0/1:44:19,25:19:684:25:896:-67.7146,0,-48.645	0/1:234:130,104:130:4660:104:3736:-265.984,0,-349.12	0/0:164:164,0:164:5837:0:0:0,-49.3689,-525.445	0/1:122:42,80:42:1490:80:2874:-222.17,0,-97.6674	0/1:45:25,20:25:883:20:716:-51.1325,0,-66.2411	0/1:141:94,47:94:3340:47:1679:-108.951,0,-258.374	0/0:87:87,0:87:3097:0:0:0,-26.1896,-278.957	0/1:306:145,161:145:5191:161:5734:-424.061,0,-375.209	0/0:244:244,0:244:8727:0:0:0,-73.4513,-785.421	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/0:253:253,0:253:9063:0:0:0,-76.1606,-815.645	0/1:91:44,46:44:1569:46:1639:-120.323,0,-114.047	0/0:123:123,0:123:4411:0:0:0,-37.0267,-397.161	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:203:83,120:83:2945:120:4300:-326.011,0,-204.172	0/1:127:64,63:64:2296:63:2259:-165.341,0,-168.67	0/0:72:72,0:72:2555:0:0:0,-21.6742,-230.198	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:165:164,0:164:5866:0:0:0,-49.3689,-527.69	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/0:111:111,0:111:3948:0:0:0,-33.4143,-355.514	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/1:82:34,48:34:1202:48:1701:-128.69,0,-83.7998	0/1:157:72,85:72:2553:85:3040:-226.566,0,-182.758	0/1:118:53,65:53:1891:65:2327:-174.16,0,-134.946	0/0:124:123,1:123:4390:1:36:0,-33.7294,-391.675	0/1:126:61,65:61:2176:65:2291:-168.519,0,-158.177	0/1:143:90,53:90:3224:53:1900:-128.226,0,-247.335	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:80:80,0:80:2851:0:0:0,-24.0824,-256.828	0/1:37:18,19:18:648:19:678:-50.1926,0,-47.5138	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/1:116:60,56:60:2139:56:1999:-145.259,0,-157.853	0/1:42:18,24:18:648:24:864:-65.4393,0,-46.0086	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:13:2,11:2:63:11:396:-32.0694,0,-2.06976	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:107:58,49:58:2061:49:1752:-125.754,0,-153.549	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:196:88,108:88:3156:108:3841:-286.884,0,-225.263	0/1:164:60,104:60:2152:104:3732:-286.706,0,-144.578	0/1:69:39,30:39:1400:30:1072:-76.0214,0,-105.528	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/1:196:99,97:99:3556:97:3451:-251.79,0,-261.245	0/0:64:63,1:63:2252:1:36:0,-15.6676,-199.345	0/1:25:11,14:11:396:14:489:-36.8085,0,-28.457	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/1:82:47,35:47:1669:35:1260:-89.021,0,-125.811	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.27	0/1:76:27,49:27:960:49:1755:-135.355,0,-63.838	0/1:128:50,78:50:1788:78:2808:-214.427,0,-122.671	0/0:121:120,1:120:4303:1:36:0,-32.8264,-383.847	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.423	0/1:82:36,46:36:1280:46:1648:-123.606,0,-90.8106	0/1:13:6,7:6:216:7:229:-16.9278,0,-15.8771	0/1:114:48,66:48:1708:66:2359:-178.251,0,-119.688	0/0:166:165,1:165:5907:1:36:0,-46.3727,-528.14	0/0:269:269,0:269:9628:0:0:0,-80.9771,-866.47	0/1:114:63,51:63:2226:51:1797:-127.69,0,-166.284	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:56:54,2:54:1932:2:72:0,-10.021,-167.32	0/1:148:82,66:82:2940:66:2342:-166.483,0,-220.281	0/0:54:54,0:54:1917:0:0:0,-16.2556,-172.805	0/1:69:38,31:38:1349:31:1074:-76.1916,0,-100.937	0/0:81:81,0:81:2884:0:0:0,-24.3834,-259.795	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/1:83:39,44:39:1400:44:1542:-114.082,0,-101.314	0/1:59:26,33:26:936:33:1165:-87.3949,0,-66.7987	0/0:139:138,0:138:4948:0:0:0,-41.5421,-445.109	0/0:102:102,0:102:3647:0:0:0,-30.7051,-328.434
chr11	1230760	.	CAAAA	TAAAA,TACAG	260840	PASS	AB=0.462524,0.534645;ABP=84.8762,72.974;AC=140,48;AF=0.744681,0.255319;AN=188;AO=8782,3597;CIGAR=1X4M,1X1M1X1M1X;DP=12407;DPB=12407;DPRA=33.3414,1.27568;EPP=19046.8,7813.8;EPPR=5.18177;GTI=5;LEN=1,5;MEANALT=1.83871,2.36538;MQM=59.5432,40.5093;MQMR=60;NS=94;NUMALT=2;ODDS=1.19499;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=314933,127580;QR=33;RO=1;RPL=8779,3597;RPP=19046.8,7813.8;RPPR=5.18177;RPR=3,0;RUN=1,1;SAF=8782,3597;SAP=19072.9,7813.8;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35,0:0:0:35,0:1260,0:-113.665,-10.5361,0,-113.665,-10.5361,-113.665	1/2:154:0,69,84:0:0:69,84:2460,2998:-427.655,-227.419,-206.648,-200.223,0,-174.937	1/1:199:0,199,0:0:0:199,0:7134,0:-641.432,-59.905,0,-641.432,-59.905,-641.432	1/2:276:0,114,162:0:0:114,162:4104,5692:-780.421,-445.549,-411.232,-335.223,0,-286.456	1/1:120:0,119,1:0:0:119,1:4268,36:-383.627,-35.8226,0,-380.819,-32.6691,-380.518	1/1:71:0,71,0:0:0:71,0:2552,0:-229.902,-21.3731,0,-229.902,-21.3731,-229.902	1/1:175:0,175,0:0:0:175,0:6250,0:-562.535,-52.6803,0,-562.535,-52.6803,-562.535	1/1:186:0,186,0:0:0:186,0:6665,0:-599.47,-55.9916,0,-599.47,-55.9916,-599.47	1/2:125:0,58,66:0:0:58,66:2076,2364:-349.741,-180.438,-162.978,-169.312,0,-149.444	1/1:140:0,140,0:0:0:140,0:5002,0:-450.291,-42.1442,0,-450.291,-42.1442,-450.291	1/1:92:0,92,0:0:0:92,0:3299,0:-297.102,-27.6948,0,-297.102,-27.6948,-297.102	1/2:70:0,29,41:0:0:29,41:1044,1446:-192.575,-107.383,-98.6532,-85.5368,0,-73.1945	1/2:80:0,34,45:0:0:34,45:1224,1586:-218.473,-118.631,-108.396,-99.8283,0,-86.282	1/1:142:0,142,0:0:0:142,0:5100,0:-458.957,-42.7463,0,-458.957,-42.7463,-458.957	1/1:57:0,57,0:0:0:57,0:2048,0:-184.587,-17.1587,0,-184.587,-17.1587,-184.587	1/1:70:0,70,0:0:0:70,0:2480,0:-223.313,-21.0721,0,-223.313,-21.0721,-223.313	1/2:93:0,42,51:0:0:42,51:1496,1804:-257.207,-135.845,-123.202,-121.704,0,-106.352	1/1:67:0,67,0:0:0:67,0:2412,0:-217.319,-20.169,0,-217.319,-20.169,-217.319	1/2:49:0,17,32:0:0:17,32:608,1143:-136.695,-87.126,-82.0085,-49.9181,0,-40.2852	1/2:274:0,137,136:0:0:137,136:4920,4858:-779.92,-379.19,-337.949,-400.791,0,-359.851	1/1:179:0,178,0:0:0:178,0:6379,0:-573.38,-53.5833,0,-573.38,-53.5833,-573.38	1/2:189:0,54,134:0:0:54,134:1932,4722:-530.247,-372.724,-356.468,-157.57,0,-117.232	1/2:116:0,45,71:0:0:45,71:1616,2523:-330.752,-198.93,-185.384,-132.174,0,-110.801	1/2:129:0,64,65:0:0:64,65:2300,2306:-366.371,-178.73,-159.464,-187.99,0,-168.423	1/1:104:0,103,1:0:0:103,1:3692,36:-332.039,-31.0061,0,-329.231,-27.8526,-328.93	1/2:456:0,226,229:0:0:226,229:8098,8118:-1305.15,-645.09,-577.058,-660.16,0,-591.224	1/1:289:0,288,0:0:0:288,0:10338,0:-929.209,-86.6966,0,-929.209,-86.6966,-929.209	1/1:22:0,22,0:0:0:22,0:792,0:-71.6011,-6.62266,0,-71.6011,-6.62266,-71.6011	1/1:412:0,410,1:0:0:410,1:14736,33:-1325.47,-123.422,0,-1322.83,-120.8,-1322.53	1/2:197:0,95,101:0:0:95,101:3408,3591:-556.254,-278.43,-249.832,-277.899,0,-247.495	1/1:195:0,195,0:0:0:195,0:7007,0:-630.431,-58.7009,0,-630.431,-58.7009,-630.431	1/2:9:0,7,2:0:0:7,2:252,72:-26.5346,-5.96147,-3.85426,-20.9217,0,-20.3197	1/1:14:0,14,0:0:0:14,0:504,0:-45.6935,-4.21442,0,-45.6935,-4.21442,-45.6935	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:203:0,100,103:0:0:100,103:3596,3680:-585.404,-292.026,-261.923,-293.732,0,-262.725	1/2:400:0,216,183:0:0:216,183:7748,6507:-1133.29,-501.629,-436.606,-631.738,0,-576.649	1/1:69:0,69,0:0:0:69,0:2467,0:-222.005,-20.7711,0,-222.005,-20.7711,-222.005	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:202:0,94,107:0:0:94,107:3364,3799:-567.715,-293.793,-265.496,-273.924,0,-241.714	1/1:55:0,55,0:0:0:55,0:1965,0:-177.1,-16.5567,0,-177.1,-16.5567,-177.1	1/1:185:0,185,0:0:0:185,0:6610,0:-594.662,-55.6906,0,-594.662,-55.6906,-594.662	1/1:81:0,80,1:0:0:80,1:2868,36:-257.935,-24.0824,0,-255.083,-20.8807,-254.782	1/2:67:0,32,35:0:0:32,35:1144,1246:-191.846,-98.5629,-88.9299,-93.6342,0,-83.0982	1/2:165:0,70,95:0:0:70,95:2493,3356:-467.781,-264.855,-243.783,-203.277,0,-174.679	1/2:180:0,76,104:0:0:76,104:2732,3643:-499.128,-276.689,-253.811,-222.785,0,-191.478	1/1:228:0,227,0:0:0:227,0:8157,0:-733.479,-68.3338,0,-733.479,-68.3338,-733.479	1/2:177:0,90,86:0:0:90,86:3236,3058:-505.927,-241.944,-214.851,-264.056,0,-238.167	1/2:251:0,109,142:0:0:109,142:3912,5052:-716.825,-397.756,-364.944,-319.421,0,-276.675	1/1:193:0,193,0:0:0:193,0:6919,0:-622.438,-58.0988,0,-622.438,-58.0988,-622.438	1/2:15:0,8,7:0:0:8,7:288,251:-43.7404,-20.2354,-17.8271,-23.8592,0,-21.752	1/1:219:0,218,0:0:0:218,0:7824,0:-703.648,-65.6245,0,-703.648,-65.6245,-703.648	1/2:64:0,33,31:0:0:33,31:1188,1097:-184.173,-87.231,-77.297,-97.2937,0,-87.9618	1/2:24:0,8,16:0:0:8,16:279,574:-66.7973,-44.1028,-41.6946,-23.0393,0,-18.2228	1/2:193:0,82,111:0:0:82,111:2944,3948:-545.962,-305.836,-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chr11	1231402	.	G	A	8843.42	PASS	AB=0.251044;ABP=1937.28;AC=41;AF=0.218085;AN=188;AO=906;CIGAR=1X;DP=8035;DPB=8035;DPRA=1.0608;EPP=1970.36;EPPR=15459.6;GTI=9;LEN=1;MEANALT=1.11111;MQM=60;MQMR=59.9952;NS=94;NUMALT=1;ODDS=1.04676;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32309;QR=254295;RO=7118;RPL=0;RPP=1970.36;RPPR=15459.6;RPR=906;RUN=1;SAF=906;SAP=1970.36;SAR=0;SRF=7118;SRP=15459.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/1:108:79,29:79:2814:29:1044:-61.7636,0,-220.985	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/1:152:121,31:121:4314:31:1112:-54.6348,0,-342.678	0/0:56:56,0:56:1997:0:0:0,-16.8577,-180.002	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:125:125,0:125:4488:0:0:0,-37.6287,-404.088	0/0:194:194,0:194:6941:0:0:0,-58.3998,-624.754	0/1:68:56,12:56:1971:12:432:-18.7512,0,-157.189	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/1:65:48,17:48:1728:17:604:-35.1237,0,-136.238	0/1:55:33,22:33:1173:22:777:-53.6937,0,-89.3189	0/0:95:95,0:95:3397:0:0:0,-28.5978,-305.943	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/0:51:51,0:51:1812:0:0:0,-15.3525,-163.359	0/1:42:29,13:29:1044:13:468:-29.8164,0,-81.6315	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/1:137:104,33:104:3705:33:1173:-64.6344,0,-292.411	0/0:113:113,0:113:3992:0:0:0,-34.0164,-359.467	0/1:115:95,20:95:3393:20:712:-29.7882,0,-270.965	0/1:62:37,25:37:1332:25:896:-62.2965,0,-101.519	0/1:95:68,27:68:2421:27:968:-58.8395,0,-189.547	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:393:302,91:302:10798:91:3201:-170.009,0,-853.417	0/0:167:166,0:166:5915:0:0:0,-49.971,-532.097	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:201:201,0:201:7205:0:0:0,-60.507,-648.501	0/1:184:156,27:156:5580:27:972:-32.3496,0,-446.875	0/0:157:156,1:156:5532:1:36:0,-43.6634,-494.406	0/1:10:7,3:7:252:3:104:-6.69251,0,-20.0187	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:137:87,50:87:3120:50:1796:-120.681,0,-239.785	0/1:215:177,37:177:6280:37:1324:-54.7305,0,-500.563	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:258:257,0:257:9163:0:0:0,-77.3647,-824.282	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:73:60,13:60:2133:13:468:-20.4845,0,-170.261	0/1:102:77,24:77:2772:24:863:-47.2286,0,-218.956	0/0:167:167,0:167:5974:0:0:0,-50.272,-537.763	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:112:90,21:90:3205:21:752:-34.2322,0,-254.898	0/0:182:181,0:181:6477:0:0:0,-54.4864,-582.654	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016	0/0:54:54,0:54:1925:0:0:0,-16.2556,-173.525	0/1:19:16,3:16:557:3:108:-4.3556,0,-44.736	0/1:95:69,26:69:2476:26:932:-55.601,0,-194.496	0/1:17:14,3:14:504:3:108:-4.95766,0,-40.5806	0/1:14:12,2:12:428:2:72:-2.6223,0,-34.6444	0/1:34:23,11:23:828:11:396:-25.7477,0,-64.6091	0/0:109:109,0:109:3890:0:0:0,-32.8123,-350.291	0/1:139:94,45:94:3376:45:1620:-104.247,0,-262.212	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:169:139,30:139:4984:30:1076:-46.2788,0,-397.833	0/0:138:137,1:137:4890:1:36:0,-37.9439,-436.334	0/1:50:34,16:34:1220:16:576:-37.1235,0,-95.0553	0/0:93:93,0:93:3321:0:0:0,-27.9958,-299.107	0/1:124:92,32:92:3270:32:1129:-64.5886,0,-257.18	0/0:159:159,0:159:5682:0:0:0,-47.8638,-511.496	0/1:23:19,4:19:684:4:144:-6.38993,0,-54.9666	0/0:67:66,0:66:2353:0:0:0,-19.868,-211.667	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:34:27,7:27:957:7:247:-12.3379,0,-76.2088	0/0:141:141,0:141:5049:0:0:0,-42.4452,-454.553	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:158:158,0:158:5658:0:0:0,-47.5627,-509.336	0/1:135:98,37:98:3486:37:1262:-73.2368,0,-273.31	0/0:204:203,0:203:7225:0:0:0,-61.1091,-649.94	0/1:48:28,20:28:1004:20:712:-49.9572,0,-76.2264	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:67:59,8:59:2124:8:288:-6.0984,0,-171.259	0/0:83:82,0:82:2910:0:0:0,-24.6845,-261.921	0/0:182:182,0:182:6518:0:0:0,-54.7875,-586.699	0/1:134:85,49:85:3052:49:1760:-118.346,0,-234.571	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:110:84,26:84:2963:26:932:-51.0856,0,-233.787	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:60:48,12:48:1705:12:417:-19.7984,0,-135.672	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:33:32,1:32:1148:1:36:0,-6.33571,-100.032	0/1:94:52,41:52:1872:41:1468:-104.061,0,-140.403	0/1:50:31,19:31:1116:19:676:-46.1165,0,-85.7002	0/0:94:94,0:94:3365:0:0:0,-28.2968,-303.064	0/0:44:43,1:43:1525:1:36:0,-9.64704,-133.943
chr11	1231405	.	T	G	12308.8	PASS	AB=0.277374;ABP=1721.11;AC=48;AF=0.255319;AN=188;AO=1113;CIGAR=1X;DP=7945;DPB=7945;DPRA=0.961671;EPP=2419.86;EPPR=14827.7;GTI=11;LEN=1;MEANALT=1.04082;MQM=60;MQMR=59.9972;NS=94;NUMALT=1;ODDS=0.922649;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39683;QR=243982;RO=6827;RPL=0;RPP=2419.86;RPPR=14827.7;RPR=1113;RUN=1;SAF=1113;SAP=2419.86;SAR=0;SRF=6827;SRP=14827.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:108:86,22:86:3084:22:784:-38.3727,0,-245.276	0/0:57:56,0:56:1982:0:0:0,-16.8577,-178.291	0/1:154:107,47:107:3829:47:1676:-104.769,0,-298.446	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:68:68,0:68:2410:0:0:0,-20.47,-217.154	0/0:121:121,0:121:4352:0:0:0,-36.4246,-391.853	0/0:191:191,0:191:6805:0:0:0,-57.4967,-612.524	0/1:65:54,11:54:1921:11:396:-16.4158,0,-153.598	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:65:44,21:44:1584:21:756:-48.8003,0,-123.285	0/1:54:41,13:41:1476:13:445:-24.1192,0,-116.881	0/0:96:96,0:96:3418:0:0:0,-28.8989,-307.832	0/0:40:39,0:39:1396:0:0:0,-11.7402,-125.579	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:49:34,15:34:1212:15:540:-34.1861,0,-94.6359	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.439	0/1:133:85,48:85:3052:48:1690:-112.345,0,-234.872	0/0:114:114,0:114:4036:0:0:0,-34.3174,-363.425	0/1:115:79,36:79:2813:36:1288:-81.6051,0,-218.79	0/1:62:54,8:54:1902:8:284:-7.23949,0,-152.79	0/1:93:76,17:76:2709:17:612:-27.4176,0,-216.057	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:386:297,89:297:10648:89:3177:-169.955,0,-841.984	0/0:164:164,0:164:5850:0:0:0,-49.3689,-526.611	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:201:201,0:201:7208:0:0:0,-60.507,-648.773	0/1:184:121,63:121:4340:63:2241:-146.563,0,-335.385	0/0:153:153,0:153:5439:0:0:0,-46.0576,-489.638	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:138:99,39:99:3564:39:1400:-84.757,0,-279.424	0/1:220:167,53:167:5934:53:1869:-102.259,0,-467.944	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:92:52,40:52:1868:40:1421:-100.491,0,-140.705	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:255:255,0:255:9125:0:0:0,-76.7626,-821.223	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:31:14,17:14:500:17:596:-44.6336,0,-36.0042	0/0:73:67,6:67:2400:6:216:0,-2.18468,-196.466	0/1:100:78,22:78:2804:22:773:-39.7865,0,-222.496	0/0:164:164,0:164:5853:0:0:0,-49.3689,-526.882	0/1:79:50,29:50:1796:29:1040:-70.133,0,-138.141	0/1:110:84,26:84:2981:26:924:-50.3644,0,-235.409	0/0:178:178,0:178:6384:0:0:0,-53.5833,-574.648	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:122:122,0:122:4388:0:0:0,-36.7257,-395.091	0/1:54:33,21:33:1184:21:747:-51.2987,0,-90.6127	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:95:77,18:77:2730:18:648:-30.054,0,-217.343	0/1:18:16,2:16:576:2:72:-1.41818,0,-46.7564	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:32:24,8:24:860:8:288:-16.6344,0,-68.0889	0/0:107:107,0:107:3852:0:0:0,-32.2102,-346.874	0/1:136:97,39:97:3492:39:1400:-85.3591,0,-273.549	0/1:8:6,2:6:201:2:72:-4.42848,0,-16.0088	0/1:168:123,45:123:4403:45:1616:-95.157,0,-345.869	0/1:135:103,32:103:3696:32:1110:-59.5638,0,-292.203	0/1:49:37,12:37:1328:12:428:-24.1083,0,-105.072	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/1:122:100,21:100:3573:21:748:-30.9945,0,-285.13	0/0:157:157,0:157:5594:0:0:0,-47.2617,-503.582	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/1:62:30,32:30:1076:32:1152:-85.3263,0,-78.489	0/1:34:23,11:23:820:11:396:-25.7477,0,-63.8875	0/0:138:138,0:138:4941:0:0:0,-41.5421,-444.838	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:155:122,33:122:4322:33:1180:-59.8484,0,-342.497	0/0:133:133,0:133:4749:0:0:0,-40.037,-427.568	0/0:203:203,0:203:7207:0:0:0,-61.1091,-648.687	0/1:48:40,8:40:1432:8:288:-11.818,0,-114.728	0/1:18:16,2:16:572:2:72:-1.41818,0,-46.3949	0/1:68:48,19:48:1713:19:684:-41.3615,0,-133.925	0/0:82:82,0:82:2904:0:0:0,-24.6845,-261.595	0/0:177:177,0:177:6326:0:0:0,-53.2823,-569.429	0/1:132:92,40:92:3270:40:1440:-90.1618,0,-254.782	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:107:68,39:68:2425:39:1400:-94.089,0,-186.294	0/0:20:19,0:19:684:0:0:0,-5.71957,-61.5305	0/1:58:31,27:31:1112:27:957:-68.9841,0,-82.9316	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/1:95:75,20:75:2673:20:701:-34.8139,0,-212.216	0/1:50:26,24:26:932:24:864:-63.0311,0,-69.1474	0/0:93:93,0:93:3313:0:0:0,-27.9958,-298.388	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681
chr11	1231419	.	A	C	125209	PASS	AB=0.524613;ABP=25.458;AC=137;AF=0.728723;AN=188;AO=5977;CIGAR=1X;DP=8011;DPB=8011;DPRA=0;EPP=12929.8;EPPR=4404.59;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9943;MQMR=59.9906;NS=94;NUMALT=1;ODDS=0.702788;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213698;QR=72361;RO=2031;RPL=6;RPP=12929.8;RPPR=4404.59;RPR=5971;RUN=1;SAF=5977;SAP=12981.9;SAR=0;SRF=2031;SRP=4413.27;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:1,37:1:36:37:1324:-115.864,-7.84087,0	0/1:106:52,54:52:1830:54:1936:-142.607,0,-133.068	1/1:59:0,59:0:0:59:2102:-189.448,-17.7608,0	0/1:157:81,76:81:2873:76:2732:-198.861,0,-211.545	1/1:55:0,55:0:0:55:1967:-177.304,-16.5567,0	1/1:68:0,68:0:0:68:2417:-217.785,-20.47,0	1/1:127:1,126:1:36:126:4516:-403.009,-34.6325,0	1/1:192:0,192:0:0:192:6868:-618.189,-57.7978,0	0/1:67:23,44:23:798:44:1572:-121.603,0,-51.9651	1/1:107:0,107:0:0:107:3837:-345.526,-32.2102,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:65:38,27:38:1352:27:972:-68.231,0,-102.413	0/1:55:36,19:36:1296:19:684:-45.3337,0,-100.387	1/1:98:0,98:0:0:98:3483:-313.681,-29.5009,0	1/1:41:0,41:0:0:41:1463:-131.965,-12.3422,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:51:16,35:16:576:35:1241:-96.64,0,-36.8225	0/1:40:13,26:13:468:26:932:-72.0989,0,-30.3596	0/1:20:13,7:13:460:7:252:-17.0084,0,-35.7148	0/1:137:81,56:81:2870:56:2012:-140.112,0,-217.294	1/1:116:0,116:0:0:116:4139:-372.694,-34.9195,0	0/1:114:57,57:57:2029:57:2036:-149.195,0,-148.563	0/1:62:33,29:33:1180:29:1040:-75.2505,0,-87.8442	0/1:94:43,51:43:1532:51:1819:-135.694,0,-109.876	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:384:179,205:179:6417:205:7339:-544.963,0,-461.913	1/1:168:0,168:0:0:168:6015:-541.455,-50.573,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:203:0,203:0:0:203:7259:-653.362,-61.1091,0	0/1:186:90,96:90:3212:96:3418:-251.841,0,-233.312	1/1:157:1,156:1:36:156:5555:-496.476,-43.6634,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:138:89,49:89:3200:49:1749:-116.15,0,-246.68	0/1:214:89,125:89:3147:125:4472:-338.229,0,-219.032	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:93:40,53:40:1421:53:1896:-142.922,0,-100.19	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:256:0,256:0:0:256:9137:-822.303,-77.0637,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:32:17,15:17:612:15:536:-38.9419,0,-45.7805	0/1:71:19,52:19:684:52:1868:-147.026,0,-40.5172	0/1:100:44,55:44:1580:55:1976:-147.953,0,-112.33	1/1:166:0,166:0:0:166:5943:-534.977,-49.971,0	0/1:81:30,51:30:1042:51:1816:-139.338,0,-69.702	0/1:113:46,66:46:1641:66:2372:-179.663,0,-113.902	1/1:183:0,183:0:0:183:6572:-591.559,-55.0885,0	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	1/1:122:0,122:0:0:122:4364:-392.932,-36.7257,0	0/1:55:22,33:22:773:33:1180:-89.9514,0,-53.3328	0/1:18:7,11:7:248:11:388:-29.8388,0,-17.2457	0/1:96:45,51:45:1612:51:1828:-135.902,0,-116.471	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:34:20,14:20:708:14:489:-34.1039,0,-53.8106	1/1:107:0,107:0:0:107:3836:-345.436,-32.2102,0	0/1:139:85,54:85:3045:54:1936:-132.673,0,-232.434	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	0/1:167:76,91:76:2716:91:3247:-242.179,0,-194.412	0/1:138:33,105:33:1168:105:3746:-295.481,0,-63.8851	0/1:50:28,22:28:1000:22:777:-55.1997,0,-75.2639	1/1:93:0,93:0:0:93:3296:-296.857,-27.9958,0	0/1:124:54,70:54:1924:70:2504:-188.281,0,-136.109	1/1:157:1,156:1:36:156:5565:-497.376,-43.6634,0	0/1:23:14,9:14:489:9:320:-22.2187,0,-37.4152	1/1:66:0,66:0:0:66:2359:-212.568,-19.868,0	0/1:62:32,30:32:1152:30:1080:-78.8494,0,-85.3263	0/1:35:20,15:20:701:15:536:-38.0388,0,-52.8757	1/1:137:0,137:0:0:137:4893:-440.522,-41.2411,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:157:33,124:33:1154:124:4425:-351.16,0,-56.9005	0/1:133:37,96:37:1309:96:3447:-270.404,0,-78.0726	1/1:199:0,199:0:0:199:7104:-639.42,-59.905,0	0/1:48:28,20:28:1000:20:720:-50.6793,0,-75.8659	0/1:18:6,12:6:216:12:413:-32.0793,0,-14.372	0/1:68:28,40:28:1004:40:1427:-108.257,0,-70.2058	1/1:81:0,81:0:0:81:2892:-260.516,-24.3834,0	1/1:180:1,179:1:36:179:6395:-572.042,-50.5871,0	0/1:134:87,47:87:3128:47:1673:-110.517,0,-241.407	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:109:64,45:64:2284:45:1613:-112.648,0,-173.01	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:61:39,22:39:1404:22:779:-52.0692,0,-108.296	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:35:0,35:0:0:35:1251:-112.894,-10.5361,0	0/1:94:61,33:61:2161:33:1184:-78.5715,0,-166.459	0/1:50:43,7:43:1525:7:252:-7.97746,0,-122.49	1/1:96:0,96:0:0:96:3420:-308.013,-28.8989,0	1/1:44:1,43:1:32:43:1548:-136.414,-10.046,0
chr11	1231458	.	A	C	8278.81	PASS	AB=0.2505;ABP=1893.83;AC=40;AF=0.212766;AN=188;AO=879;CIGAR=1X;DP=7844;DPB=7844;DPRA=1.1288;EPP=1911.73;EPPR=15123;GTI=10;LEN=1;MEANALT=1;MQM=60;MQMR=59.9987;NS=94;NUMALT=1;ODDS=0.963009;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31017;QR=246118;RO=6963;RPL=879;RPP=1911.73;RPPR=15123;RPR=0;RUN=1;SAF=879;SAP=1911.73;SAR=0;SRF=6963;SRP=15123;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:38:38,0:38:1290:0:0:0,-11.4391,-116.395	0/1:106:76,30:76:2712:30:1057:-63.5298,0,-212.415	0/0:58:58,0:58:2041:0:0:0,-17.4597,-183.961	0/1:156:124,32:124:4408:32:1115:-53.6936,0,-349.935	0/0:54:54,0:54:1907:0:0:0,-16.2556,-171.907	0/0:67:67,0:67:2354:0:0:0,-20.169,-212.119	0/0:124:124,0:124:4407:0:0:0,-37.3277,-396.805	0/0:190:190,0:190:6732:0:0:0,-57.1957,-605.962	0/1:67:55,12:55:1930:12:409:-16.9664,0,-153.804	0/0:106:106,0:106:3741:0:0:0,-31.9092,-336.894	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:64:48,16:48:1712:16:572:-32.5475,0,-135.1	0/1:54:32,22:32:1148:22:788:-54.9892,0,-87.3742	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/0:31:31,0:31:1087:0:0:0,-9.33193,-98.1384	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:42:29,13:29:1011:13:468:-29.8164,0,-78.6572	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	0/1:131:100,31:100:3540:31:1104:-60.2357,0,-279.378	0/0:115:115,0:115:4052:0:0:0,-34.6184,-364.871	0/1:112:92,20:92:3269:20:690:-28.704,0,-260.715	0/1:59:36,23:36:1280:23:820:-56.3617,0,-97.7425	0/1:93:66,27:66:2332:27:959:-58.6296,0,-182.145	0/0:71:71,0:71:2478:0:0:0,-21.3731,-223.273	0/1:378:293,85:293:10411:85:2998:-156.261,0,-823.132	0/0:163:163,0:163:5757:0:0:0,-49.0679,-518.254	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:199:198,0:198:7019:0:0:0,-59.6039,-631.422	0/1:180:155,25:155:5455:25:884:-25.693,0,-436.901	0/0:156:155,1:155:5463:1:36:0,-43.3624,-488.207	0/1:10:7,3:7:248:3:99:-6.22628,0,-19.6539	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:137:88,49:88:3127:49:1737:-115.371,0,-240.416	0/1:204:168,36:168:5923:36:1254:-51.7505,0,-471.78	0/0:36:35,0:35:1248:0:0:0,-10.536,-112.352	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:90:90,0:90:3169:0:0:0,-27.0927,-285.437	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:254:254,0:254:8900:0:0:0,-76.4616,-801.002	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:31:31,0:31:1084:0:0:0,-9.33193,-97.8661	0/1:73:60,13:60:2112:13:464:-20.1223,0,-168.372	0/1:98:75,23:75:2639:23:828:-45.3432,0,-208.258	0/0:165:165,0:165:5866:0:0:0,-49.6699,-528.055	0/0:80:80,0:80:2836:0:0:0,-24.0824,-255.48	0/1:110:90,20:90:3189:20:716:-31.6544,0,-254.121	0/0:177:177,0:177:6246:0:0:0,-53.2823,-562.246	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:115:115,0:115:4044:0:0:0,-34.6184,-364.153	0/0:53:53,0:53:1873:0:0:0,-15.9546,-168.847	0/1:16:13,3:13:464:3:108:-5.25869,0,-37.281	0/1:92:65,27:65:2284:27:934:-56.6765,0,-178.129	0/1:16:13,3:13:447:3:100:-4.51396,0,-35.7412	0/1:14:12,2:12:419:2:72:-2.6223,0,-33.8283	0/1:33:22,11:22:776:11:383:-24.8693,0,-60.2282	0/0:106:106,0:106:3764:0:0:0,-31.9092,-338.963	0/1:137:93,44:93:3271:44:1555:-98.9999,0,-253.371	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:163:133,30:133:4742:30:1053:-46.0107,0,-377.871	0/0:129:128,1:128:4527:1:36:0,-35.2346,-404.005	0/1:49:34,15:34:1179:15:540:-34.1861,0,-91.6604	0/0:90:90,0:90:3151:0:0:0,-27.0927,-283.818	0/1:122:90,32:90:3161:32:1116:-64.0189,0,-247.988	0/0:153:153,0:153:5374:0:0:0,-46.0576,-483.798	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	0/0:62:62,0:62:2185:0:0:0,-18.6639,-196.915	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:34:27,7:27:940:7:252:-12.7939,0,-74.6785	0/0:135:135,0:135:4769:0:0:0,-40.639,-429.373	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:151:151,0:151:5332:0:0:0,-45.4555,-480.017	0/1:126:93,33:93:3281:33:1167:-67.4066,0,-257.582	0/0:192:192,0:192:6792:0:0:0,-57.7978,-611.361	0/1:46:27,19:27:955:19:680:-47.6818,0,-72.4175	0/1:17:14,3:14:479:3:108:-4.95766,0,-38.3179	0/1:64:56,8:56:1981:8:272:-5.54528,0,-159.297	0/0:81:81,0:81:2842:0:0:0,-24.3834,-256.018	0/0:178:178,0:178:6234:0:0:0,-53.5833,-561.165	0/1:132:85,47:85:3044:47:1667:-110.581,0,-234.454	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:35:35,0:35:1230:0:0:0,-10.536,-111.002	0/1:109:83,26:83:2937:26:911:-49.4927,0,-231.752	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:60:48,12:48:1716:12:419:-19.9815,0,-136.664	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.427	0/1:93:52,41:52:1864:41:1434:-101.358,0,-140.044	0/1:49:31,18:31:1108:18:636:-42.8176,0,-85.2805	0/0:94:94,0:94:3305:0:0:0,-28.2968,-297.672	0/0:43:42,1:42:1512:1:36:0,-9.34601,-132.776
chr11	1231592	.	C	T	9621.6	PASS	AB=0.284294;ABP=1222.72;AC=40;AF=0.215054;AN=186;AO=861;CIGAR=1X;DP=6836;DPB=6836;DPRA=1.13258;EPP=1872.65;EPPR=12955.8;GTI=11;LEN=1;MEANALT=1.02381;MQM=47.8699;MQMR=59.9437;NS=93;NUMALT=1;ODDS=2.12774;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30693;QR=211179;RO=5973;RPL=0;RPP=1872.65;RPPR=12955.8;RPR=861;RUN=1;SAF=0;SAP=1872.65;SAR=861;SRF=0;SRP=12973.2;SRR=5973;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:84:84,0:84:2971:0:0:0,-25.2865,-267.614	0/1:51:36,15:36:1283:15:528:-31.332,0,-100.42	0/0:324:324,0:324:11443:0:0:0,-97.5337,-1029.75	0/1:139:78,61:78:2734:61:2188:-153.786,0,-204.459	0/0:60:60,0:60:2131:0:0:0,-18.0618,-191.727	0/0:62:62,0:62:2206:0:0:0,-18.6639,-198.804	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/0:97:96,0:96:3376:0:0:0,-28.8989,-303.687	0/1:117:87,30:87:3083:30:1057:-58.7213,0,-242.474	0/0:33:33,0:33:1170:0:0:0,-9.93399,-105.606	0/0:13:13,0:13:447:0:0:0,-3.91339,-40.5577	0/1:61:46,15:46:1598:15:536:-29.462,0,-125.745	0/1:51:39,12:39:1379:12:432:-23.2763,0,-109.026	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.971	0/1:16:13,3:13:447:3:108:-4.65832,0,-35.7412	0/1:9:6,3:6:208:3:108:-7.2009,0,-16.3498	0/1:93:68,25:68:2408:25:900:-52.357,0,-188.979	0/0:105:105,0:105:3730:0:0:0,-31.6081,-335.898	0/1:107:57,50:57:2017:50:1792:-128.223,0,-149.591	0/1:130:101,29:101:3596:29:1044:-54.3947,0,-284.578	0/1:73:62,11:62:2207:11:396:-13.4329,0,-176.915	0/0:77:77,0:77:2697:0:0:0,-23.1793,-242.972	0/1:183:148,35:148:5241:35:1251:-57.265,0,-416.712	0/0:163:163,0:163:5775:0:0:0,-49.0679,-519.867	0/0:8:8,0:8:272:0:0:0,-2.40824,-24.8112	0/0:182:182,0:182:6436:0:0:0,-54.7875,-579.33	0/1:120:69,51:69:2428:51:1813:-124.984,0,-182.559	0/0:50:50,0:50:1771:0:0:0,-15.0515,-159.672	0/1:17:14,3:14:500:3:108:-4.86956,0,-40.2187	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:25:25,0:25:866:0:0:0,-7.52575,-78.2539	0/1:136:89,47:89:3146:47:1671:-108.809,0,-242.427	0/1:146:109,37:109:3862:37:1324:-73.0612,0,-303.823	0/0:15:15,0:15:513:0:0:0,-4.51545,-46.4929	0/1:8:4,4:4:129:4:144:-10.789,0,-9.51942	0/0:61:61,0:61:2145:0:0:0,-18.3628,-193.314	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:148:147,1:147:5180:1:32:0,-41.3659,-463.154	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:20:20,0:20:689:0:0:0,-6.0206,-62.3285	0/1:114:94,20:94:3288:20:712:-29.6825,0,-261.819	0/1:83:59,24:59:2090:24:860:-50.096,0,-163.383	0/0:174:174,0:174:6183:0:0:0,-52.3792,-556.479	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.828	0/1:167:146,21:146:5148:21:752:-17.3219,0,-413.193	0/0:102:102,0:102:3587:0:0:0,-30.7051,-323.035	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:129:129,0:129:4570:0:0:0,-38.8329,-411.467	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/1:9:7,2:7:252:2:72:-4.03291,0,-20.3197	0/1:131:91,40:91:3246:40:1428:-88.2789,0,-252.926	0/1:53:45,8:45:1608:8:288:-10.1882,0,-129.056	0/1:10:9,1:9:324:1:36:-0.578929,0,-26.4956	0/1:25:12,13:12:432:13:464:-34.2869,0,-31.6954	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.064	0/1:77:55,22:55:1915:22:790:-47.4466,0,-149.448	.:.:.:.:.:.:.:.	0/1:119:70,49:70:2480:49:1746:-120.985,0,-187.625	0/0:133:131,2:131:4625:2:63:0,-34.0747,-410.451	0/1:38:32,6:32:1148:6:216:-8.16156,0,-92.1907	0/0:101:101,0:101:3591:0:0:0,-30.404,-323.398	0/1:139:103,36:103:3671:36:1281:-72.9224,0,-288.751	0/0:104:104,0:104:3689:0:0:0,-31.3071,-332.214	0/1:9:5,4:5:180:4:140:-10.129,0,-13.8428	0/0:52:52,0:52:1842:0:0:0,-15.6536,-166.059	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:16:12,4:12:432:4:140:-7.92314,0,-34.4047	0/0:130:130,0:130:4614:0:0:0,-39.1339,-415.427	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:116:116,0:116:4095:0:0:0,-34.9195,-368.738	0/1:182:127,54:127:4511:54:1915:-116.488,0,-351.461	0/0:175:175,0:175:6174:0:0:0,-52.6802,-555.763	0/1:45:31,14:31:1112:14:504:-31.4699,0,-86.845	0/1:25:21,4:21:722:4:133:-4.4711,0,-57.7718	0/1:99:70,29:70:2482:29:1036:-62.9218,0,-193.802	0/0:121:121,0:121:4306:0:0:0,-36.4246,-387.573	0/0:119:119,0:119:4234:0:0:0,-35.8226,-381.233	0/1:47:35,12:35:1205:12:426:-23.5181,0,-94.5913	0/0:26:26,0:26:908:0:0:0,-7.82678,-82.0325	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/1:62:43,19:43:1499:19:674:-41.537,0,-116.536	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:39:26,13:26:886:13:464:-29.7904,0,-68.3103	0/0:24:24,0:24:819:0:0:0,-7.22472,-74.0209	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:47:22,25:22:771:25:888:-64.9821,0,-55.5619	0/1:25:18,7:18:648:7:233:-13.673,0,-51.1261	0/0:190:190,0:190:6671:0:0:0,-57.1957,-600.474	0/0:44:44,0:44:1519:0:0:0,-13.2453,-136.996
chr11	1231617	.	A	G	9643.05	PASS	AB=0.282808;ABP=1251.87;AC=40;AF=0.215054;AN=186;AO=867;CIGAR=1X;DP=6946;DPB=6946;DPRA=1.1337;EPP=1885.68;EPPR=12984.9;GTI=11;LEN=1;MEANALT=1.09091;MQM=47.9942;MQMR=59.9216;NS=93;NUMALT=1;ODDS=2.52323;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30944;QR=217369;RO=6074;RPL=867;RPP=1885.68;RPPR=12984.9;RPR=0;RUN=1;SAF=0;SAP=1885.68;SAR=867;SRF=0;SRP=13192.5;SRR=6074;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:87:87,0:87:3096:0:0:0,-26.1896,-278.866	0/1:48:34,13:34:1224:13:468:-27.0949,0,-95.9702	0/0:330:330,0:330:11845:0:0:0,-99.3399,-1065.88	0/1:137:77,60:77:2760:60:2143:-150.559,0,-207.4	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.663	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:99:99,0:99:3541:0:0:0,-29.802,-318.885	0/1:117:86,31:86:3073:31:1104:-62.7799,0,-241.576	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:62:46,16:46:1644:16:576:-32.1754,0,-129.585	0/1:50:38,12:38:1368:12:432:-23.5773,0,-108.179	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.9688	0/1:16:13,3:13:468:3:97:-4.06722,0,-37.6432	0/1:8:6,2:6:216:2:72:-4.33394,0,-17.3823	0/1:94:68,26:68:2440:26:921:-53.9282,0,-191.557	0/0:106:106,0:106:3784:0:0:0,-31.9092,-340.759	0/1:108:59,49:59:2120:49:1756:-124.87,0,-158.557	0/1:131:102,29:102:3637:29:1027:-52.5974,0,-286.905	0/1:73:62,11:62:2224:11:396:-13.4329,0,-178.444	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.878	0/1:188:151,37:151:5405:37:1328:-62.6775,0,-429.956	0/0:171:171,0:171:6090:0:0:0,-51.4761,-547.885	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:188:188,0:188:6664:0:0:0,-56.5936,-599.838	0/1:121:70,51:70:2516:51:1825:-125.024,0,-190.077	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/1:17:14,3:14:504:3:108:-4.86956,0,-40.5806	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:26:25,0:25:900:0:0:0,-7.52575,-81.0776	0/1:136:89,47:89:3200:47:1676:-108.979,0,-247.282	0/1:142:106,36:106:3808:36:1268:-69.9655,0,-300.169	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:8:4,4:4:144:4:140:-10.4372,0,-10.9054	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:147:146,1:146:5224:1:36:0,-40.6846,-466.728	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:118:98,20:98:3520:20:716:-28.7789,0,-281.396	0/1:84:60,24:60:2152:24:860:-49.7949,0,-168.632	0/0:169:169,0:169:6037:0:0:0,-50.8741,-543.42	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.782	0/1:171:150,21:150:5376:21:748:-15.7973,0,-432.495	0/0:102:100,1:100:3596:1:36:0,-27.0907,-320.32	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:130:130,0:130:4672:0:0:0,-39.1339,-420.639	0/0:26:26,0:26:917:0:0:0,-7.82678,-82.8444	0/1:9:7,2:7:248:2:72:-4.03291,0,-19.9549	0/1:132:92,40:92:3270:40:1436:-88.6643,0,-254.782	0/1:53:45,8:45:1620:8:284:-9.83476,0,-130.135	0/1:11:10,1:10:360:1:36:-0.277899,0,-29.3764	0/1:24:12,12:12:432:12:428:-31.3573,0,-31.9965	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.949	0/1:83:58,25:58:2076:25:882:-53.9881,0,-162.125	.:.:.:.:.:.:.:.	0/1:123:72,51:72:2557:51:1836:-127.421,0,-193.348	0/0:138:135,2:135:4828:2:72:0,-34.7007,-427.924	0/1:43:35,7:35:1245:7:252:-9.92263,0,-99.3052	0/0:103:103,0:103:3708:0:0:0,-31.0061,-333.92	0/1:142:106,36:106:3745:36:1292:-72.7304,0,-294.495	0/0:107:107,0:107:3836:0:0:0,-32.2102,-345.436	0/1:9:5,4:5:180:4:144:-10.471,0,-13.8428	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:15:12,3:12:432:3:108:-5.5051,0,-34.7057	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.978	0/0:69:68,1:68:2425:1:36:0,-17.1728,-214.906	0/0:115:115,0:115:4104:0:0:0,-34.6184,-369.547	0/1:180:127,53:127:4541:53:1886:-114.421,0,-354.67	0/0:180:180,0:180:6441:0:0:0,-54.1854,-579.757	0/1:46:33,13:33:1180:13:453:-26.6829,0,-92.6607	0/1:25:20,5:20:701:5:172:-7.35674,0,-55.886	0/1:99:69,30:69:2480:30:1067:-65.5849,0,-193.651	0/0:125:125,0:125:4472:0:0:0,-37.6287,-402.607	0/0:128:128,0:128:4577:0:0:0,-38.5318,-412.086	0/1:48:35,13:35:1252:13:456:-25.7722,0,-98.5072	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:68:48,20:48:1720:20:720:-43.3575,0,-133.988	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:39:26,13:26:936:13:468:-30.126,0,-72.8193	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:45:21,24:21:756:24:859:-63.0336,0,-54.8209	0/1:25:18,7:18:648:7:252:-15.1443,0,-51.1261	0/0:192:192,0:192:6865:0:0:0,-57.7978,-617.918	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852
chr11	1231633	.	A	G	133121	PASS	AB=0.722872;ABP=1331;AC=146;AF=0.784946;AN=186;AO=6168;CIGAR=1X;DP=7028;DPB=7028;DPRA=0;EPP=13396.7;EPPR=1863.96;GTI=11;LEN=1;MEANALT=1.03226;MQM=59.903;MQMR=47.7211;NS=93;NUMALT=1;ODDS=2.89355;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221015;QR=30625;RO=857;RPL=6168;RPP=13396.7;RPPR=1863.96;RPR=0;RUN=1;SAF=0;SAP=13396.7;SAR=6168;SRF=0;SRP=1863.96;SRR=857;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:88:0,88:0:0:88:3164:-284.976,-26.4906,0	0/1:51:14,37:14:500:37:1324:-104.11,0,-28.2282	1/1:333:0,333:0:0:333:11935:-1073.99,-100.243,0	0/1:136:58,77:58:2084:77:2768:-208.362,0,-145.292	1/1:61:0,61:0:0:61:2184:-196.654,-18.3628,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:74:0,74:0:0:74:2664:-240.005,-22.2762,0	1/1:102:0,101:0:0:101:3629:-326.437,-30.404,0	0/1:122:31,91:31:1097:91:3249:-255.891,0,-60.0656	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:65:16,49:16:576:49:1760:-139.117,0,-31.2723	0/1:51:12,39:12:432:39:1400:-110.757,0,-23.2763	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:16:3,13:3:108:13:464:-37.281,0,-4.65832	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.87033	0/1:95:26,69:26:906:69:2470:-193.955,0,-52.0591	1/1:108:0,108:0:0:108:3844:-346.158,-32.5112,0	0/1:110:50,60:50:1792:60:2156:-161.194,0,-127.316	0/1:135:28,107:28:1008:107:3816:-302.401,0,-49.651	0/1:74:11,63:11:377:63:2245:-180.036,0,-11.5912	1/1:79:1,78:1:36:78:2795:-248.191,-20.1831,0	0/1:190:37,153:37:1324:153:5447:-433.163,0,-61.8548	1/1:172:0,172:0:0:172:6184:-556.496,-51.7772,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:191:0,191:0:0:191:6832:-614.95,-57.4967,0	0/1:123:51,72:51:1813:72:2568:-194.152,0,-123.281	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:17:3,14:3:108:14:504:-40.5806,0,-4.86956	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:27:0,27:0:0:27:956:-85.4157,-8.12781,0	0/1:137:48,89:48:1698:89:3195:-246.531,0,-110.58	0/1:147:36,111:36:1281:111:3972:-313.417,0,-68.6343	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.789	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:149:1,148:1:36:148:5316:-475.004,-41.2867,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:122:21,101:21:756:101:3611:-288.296,0,-31.1614	0/1:84:24,60:24:860:60:2148:-168.301,0,-49.7949	1/1:174:0,174:0:0:174:6236:-561.235,-52.3792,0	1/1:88:0,88:0:0:88:3147:-283.452,-26.4906,0	0/1:172:20,152:20:720:152:5460:-439.749,0,-12.9462	1/1:105:0,105:0:0:105:3749:-337.605,-31.6082,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:130:0,130:0:0:130:4660:-419.561,-39.1339,0	1/1:27:0,27:0:0:27:972:-87.7975,-8.12781,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.33394	0/1:130:38,92:38:1360:92:3304:-258.444,0,-82.4704	0/1:52:7,45:7:248:45:1616:-130.076,0,-6.89641	0/1:11:1,10:1:36:10:356:-29.0464,0,-0.277898	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.7147	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	0/1:83:24,59:24:852:59:2102:-164.463,0,-51.1484	.:.:.:.:.:.:.:.	0/1:122:48,74:48:1724:74:2664:-203.275,0,-118.142	1/1:139:2,137:2:72:137:4896:-433.976,-35.0435,0	0/1:43:7,36:7:252:36:1292:-103.443,0,-9.84985	1/1:103:0,103:0:0:103:3704:-333.56,-31.0061,0	0/1:143:37,106:37:1317:106:3800:-299.148,0,-74.5635	1/1:106:0,106:0:0:106:3793:-341.566,-31.9092,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.471	1/1:55:0,55:0:0:55:1972:-177.754,-16.5567,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:16:4,12:4:144:12:432:-34.4047,0,-8.28143	1/1:134:0,133:0:0:133:4772:-429.258,-40.037,0	1/1:70:0,70:0:0:70:2496:-224.891,-21.0721,0	1/1:122:0,122:0:0:122:4386:-394.911,-36.7257,0	0/1:183:53,130:53:1908:130:4658:-364.293,0,-115.388	1/1:183:0,183:0:0:183:6533:-588.046,-55.0885,0	0/1:45:13,32:13:460:32:1148:-90.0835,0,-27.605	0/1:25:4,21:4:144:21:752:-60.4805,0,-4.85237	0/1:96:27,69:27:972:69:2464:-193.103,0,-57.9319	1/1:127:0,127:0:0:127:4537:-408.169,-38.2308,0	1/1:129:0,129:0:0:129:4624:-416.319,-38.8329,0	0/1:46:13,33:13:468:33:1184:-93.0209,0,-27.1189	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:68:19,49:19:684:49:1756:-137.227,0,-40.1187	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:40:13,27:13:468:27:972:-75.7567,0,-29.044	1/1:24:0,24:0:0:24:855:-77.2702,-7.22472,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:46:24,22:24:856:22:792:-57.7583,0,-62.575	0/1:24:6,18:6:216:18:648:-51.4272,0,-12.206	1/1:197:0,197:0:0:197:7076:-636.897,-59.3029,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0
chr11	1260006	.	CC	TC,TT	96643.4	PASS	AB=0.669223,0.328859;ABP=262.44,268.353;AC=155,29;AF=0.842391,0.157609;AN=184;AO=3882,483;CIGAR=1X1M,2X;DP=4368;DPB=4368;DPRA=0,1.01526;EPP=8242.66,1051.83;EPPR=0;GTI=8;LEN=1,2;MEANALT=1.42391,2.05556;MQM=51.1461,36.9938;MQMR=0;NS=92;NUMALT=2;ODDS=1.23515;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=139084,17159;QR=0;RO=0;RPL=0,0;RPP=8432.67,1051.83;RPPR=0;RPR=3882,483;RUN=1,1;SAF=3860,483;SAP=8242.66,1051.83;SAR=22,0;SRF=0;SRP=0;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12,0:0:0:12,0:432,0:-38.9794,-3.61236,0,-38.9794,-3.61236,-38.9794	1/2:16:0,12,4:0:0:12,4:431,142:-45.4352,-10.7142,-7.10182,-35.0513,0,-33.8472	1/1:45:0,45,0:0:0:45,0:1615,0:-144.493,-13.5464,0,-144.493,-13.5464,-144.493	1/2:74:0,66,8:0:0:66,8:2364,288:-214.896,-22.5841,-2.71607,-192.656,0,-190.248	1/1:16:0,16,0:0:0:16,0:559,0:-49.4673,-4.81648,0,-49.4673,-4.81648,-49.4673	1/1:10:0,10,0:0:0:10,0:352,0:-31.8791,-3.0103,0,-31.8791,-3.0103,-31.8791	1/1:54:0,54,0:0:0:54,0:1932,0:-173.344,-16.2556,0,-173.344,-16.2556,-173.344	1/1:102:0,102,0:0:0:102,0:3659,0:-327.615,-30.7051,0,-327.615,-30.7051,-327.615	1/1:28:0,28,0:0:0:28,0:1003,0:-89.8207,-8.42884,0,-89.8207,-8.42884,-89.8207	1/1:40:0,40,0:0:0:40,0:1436,0:-129.05,-12.0412,0,-129.05,-12.0412,-129.05	1/1:41:0,41,0:0:0:41,0:1454,0:-130.243,-12.3422,0,-130.243,-12.3422,-130.243	1/2:74:0,36,38:0:0:36,38:1294,1343:-202.26,-97.5734,-86.7363,-105.024,0,-93.585	1/2:49:0,26,23:0:0:26,23:932,817:-133.575,-58.024,-50.1972,-75.8843,0,-68.9606	1/1:40:0,40,0:0:0:40,0:1425,0:-127.35,-12.0412,0,-127.35,-12.0412,-127.35	1/1:67:0,67,0:0:0:67,0:2394,0:-214.57,-20.169,0,-214.57,-20.169,-214.57	1/1:53:0,53,0:0:0:53,0:1893,0:-169.151,-15.9546,0,-169.151,-15.9546,-169.151	1/2:25:0,17,8:0:0:17,8:608,286:-70.3123,-21.0323,-15.9148,-49.6121,0,-47.2039	1/1:37:0,37,0:0:0:37,0:1328,0:-119.004,-11.1381,0,-119.004,-11.1381,-119.004	1/1:23:0,23,0:0:0:23,0:828,0:-74.3951,-6.92369,0,-74.3951,-6.92369,-74.3951	1/1:43:0,39,4:0:0:39,4:1387,144:-124.542,-11.7402,0,-113.492,-0.34861,-112.288	1/1:38:0,38,0:0:0:38,0:1337,0:-119.675,-11.4391,0,-119.675,-11.4391,-119.675	1/2:41:0,26,14:0:0:26,14:928,489:-114.078,-38.5464,-30.7196,-75.62,0,-71.4056	1/1:20:0,19,1:0:0:19,1:676,36:-60.6239,-5.71957,0,-57.8443,-2.597,-57.5433	.:.:.:.:.:.:.:.	1/1:24:0,24,0:0:0:24,0:856,0:-75.6731,-7.22472,0,-75.6731,-7.22472,-75.6731	1/1:70:0,70,0:0:0:70,0:2520,0:-226.604,-21.0721,0,-226.604,-21.0721,-226.604	1/1:109:0,109,0:0:0:109,0:3909,0:-349.62,-32.8123,0,-349.62,-32.8123,-349.62	1/1:20:0,20,0:0:0:20,0:712,0:-63.9364,-6.0206,0,-63.9364,-6.0206,-63.9364	1/1:202:0,202,0:0:0:202,0:7226,0:-648.579,-60.8081,0,-648.579,-60.8081,-648.579	1/2:24:0,11,13:0:0:11,13:396,466:-67.5393,-35.3692,-32.0578,-32.5167,0,-28.6033	1/1:37:0,37,0:0:0:37,0:1328,0:-119.29,-11.1381,0,-119.29,-11.1381,-119.29	1/2:12:0,5,7:0:0:5,7:180,252:-33.8613,-19.2167,-17.7116,-14.9927,0,-12.8855	1/1:21:0,21,0:0:0:21,0:756,0:-67.7083,-6.32163,0,-67.7083,-6.32163,-67.7083	1/1:8:0,8,0:0:0:8,0:288,0:-26.1141,-2.40824,0,-26.1141,-2.40824,-26.1141	1/1:12:0,12,0:0:0:12,0:428,0:-38.6527,-3.61236,0,-38.6527,-3.61236,-38.6527	1/1:17:0,17,0:0:0:17,0:603,0:-54.0264,-5.11751,0,-54.0264,-5.11751,-54.0264	1/2:89:0,77,12:0:0:77,12:2761,432:-258.159,-34.3272,-11.1479,-224.181,0,-220.569	1/1:48:0,48,0:0:0:48,0:1728,0:-155.019,-14.4494,0,-155.019,-14.4494,-155.019	1/1:34:0,34,0:0:0:34,0:1220,0:-109.426,-10.235,0,-109.426,-10.235,-109.426	.:.:.:.:.:.:.:.	1/2:41:0,37,4:0:0:37,4:1317,144:-117.324,-11.1766,-0.0385117,-106.484,0,-105.28	1/1:37:0,37,0:0:0:37,0:1322,0:-118.204,-11.1381,0,-118.204,-11.1381,-118.204	1/1:61:0,61,0:0:0:61,0:2192,0:-196.639,-18.3628,0,-196.639,-18.3628,-196.639	1/1:44:0,44,0:0:0:44,0:1575,0:-141.6,-13.2453,0,-141.6,-13.2453,-141.6	1/2:28:0,19,9:0:0:19,9:684,324:-81.0324,-25.3315,-19.6119,-56.0484,0,-53.3391	1/1:32:0,30,2:0:0:30,2:1076,72:-96.6511,-9.0309,0,-90.9885,-3.01964,-90.3865	1/2:48:0,35,13:0:0:35,13:1260,468:-136.513,-34.3382,-23.8021,-102.508,0,-98.5951	1/1:89:0,89,0:0:0:89,0:3200,0:-287.326,-26.7917,0,-287.326,-26.7917,-287.326	1/2:43:0,38,5:0:0:38,5:1368,180:-125.363,-14.1722,-2.73302,-111.534,0,-110.029	1/1:43:0,42,1:0:0:42,1:1504,36:-134.84,-12.6433,0,-132.06,-9.52069,-131.759	1/1:65:0,65,0:0:0:65,0:2332,0:-209.483,-19.567,0,-209.483,-19.567,-209.483	1/1:156:0,152,4:0:0:152,4:5450,133:-488.418,-45.7566,0,-478.843,-35.8802,-477.639	1/1:55:0,55,0:0:0:55,0:1961,0:-175.78,-16.5567,0,-175.78,-16.5567,-175.78	1/1:27:0,27,0:0:0:27,0:972,0:-87.3408,-8.12781,0,-87.3408,-8.12781,-87.3408	1/2:38:0,6,32:0:0:6,32:216,1130:-99.773,-82.2475,-80.4413,-17.877,0,-8.24408	1/2:41:0,36,5:0:0:36,5:1296,180:-119.046,-13.8871,-3.05004,-105.497,0,-103.991	1/1:7:0,7,0:0:0:7,0:252,0:-22.989,-2.10721,0,-22.989,-2.10721,-22.989	1/1:11:0,11,0:0:0:11,0:396,0:-35.9467,-3.31133,0,-35.9467,-3.31133,-35.9467	2/2:38:0,2,36:0:0:2,36:68,1266:-109.1,-103.589,-102.987,-10.8371,-4.98636,0	1/1:48:0,48,0:0:0:48,0:1720,0:-154.427,-14.4494,0,-154.427,-14.4494,-154.427	1/1:42:0,42,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chr11	1326244	.	ACG	GCC,ACC	201241	PASS	AB=0.518643,0.477785;ABP=16.5312,22.2093;AC=138,48;AF=0.741935,0.258065;AN=186;AO=7318,2147;CIGAR=1X1M1X,2M1X;DP=9495;DPB=9497.67;DPRA=0,0.859983;EPP=15893.8,4665.16;EPPR=0;GTI=2;LEN=3,1;MEANALT=1.88172,2.32075;MQM=59.9806,59.9762;MQMR=0;NS=93;NUMALT=2;ODDS=1.44955;PAIRED=0,0;PAIREDR=0;PAO=4,4;PQA=106,106;PQR=0;PRO=0;QA=257912,76543;QR=0;RO=0;RPL=0,0;RPP=15893.8,4665.16;RPPR=0;RPR=7318,2147;RUN=1,1;SAF=7318,2147;SAP=15893.8,4665.16;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:101:0,101,0:0:0:101,0:3563,0:-320.878,-30.404,0,-320.878,-30.404,-320.878	1/2:99:0,57,42:0:0:57,42:2015,1500:-286.757,-122.651,-105.493,-164.461,0,-151.818	1/1:355:0,355,0:0:0:355,0:12514,0:-1126.11,-106.866,0,-1126.11,-106.866,-1126.11	1/2:168:0,83,85:0:0:83,85:2938,3040:-487.499,-248.243,-223.257,-239.612,0,-214.024	1/1:84:0,84,0:0:0:84,0:2952,0:-265.915,-25.2865,0,-265.915,-25.2865,-265.915	1/1:51:0,51,0:0:0:51,0:1798,0:-162.101,-15.3525,0,-162.101,-15.3525,-162.101	1/1:123:0,123,0:0:0:123,0:4323,0:-389.25,-37.0267,0,-389.25,-37.0267,-389.25	1/1:181:0,178,0:0:0:178,0:6284,0:-565.3,-53.5833,0,-565.3,-53.5833,-565.3	1/2:115:0,58,56:0:0:58,56:2043,1976:-327.224,-160.895,-143.436,-166.322,0,-149.464	1/1:77:0,76,0:0:0:76,0:2688,0:-241.836,-22.8783,0,-241.836,-22.8783,-241.836	1/1:96:0,96,0:0:0:96,0:3387,0:-305.045,-28.8989,0,-305.045,-28.8989,-305.045	1/2:96:0,43,53:0:0:43,53:1536,1895:-280.105,-154.873,-141.929,-125.589,0,-109.634	1/2:90:0,40,50:0:0:40,50:1412,1774:-259.872,-144.89,-132.849,-115.335,0,-100.284	1/1:74:0,74,0:0:0:74,0:2619,0:-235.934,-22.2762,0,-235.934,-22.2762,-235.934	1/1:87:0,87,0:0:0:87,0:3081,0:-277.518,-26.1896,0,-277.518,-26.1896,-277.518	1/1:83:0,83,0:0:0:83,0:2934,0:-264.297,-24.9855,0,-264.297,-24.9855,-264.297	1/2:34:0,16,18:0:0:16,18:574,639:-99.2407,-52.4197,-47.6032,-47.1778,0,-41.7593	1/1:25:0,25,0:0:0:25,0:874,0:-78.9753,-7.52575,0,-78.9753,-7.52575,-78.9753	1/2:42:0,18,24:0:0:18,24:637,856:-122.021,-70.1364,-64.7178,-52.2393,0,-45.0146	1/2:297:0,149,146:0:0:149,146:5266,5208:-853.475,-424.605,-379.752,-428.919,0,-384.969	1/1:158:0,155,2:0:0:155,2:5506,72:-495.31,-46.6597,0,-489.435,-40.7848,-488.833	1/2:79:0,21,58:0:0:21,58:751,2080:-231.247,-170.011,-163.689,-61.5946,0,-44.1348	1/2:120:0,67,53:0:0:67,53:2352,1904:-347.038,-155.624,-135.455,-191.711,0,-175.756	1/2:84:0,56,27:0:0:56,27:1965,968:-238.939,-79.0268,-62.1691,-159.985,0,-151.857	1/1:130:0,130,0:0:0:130,0:4556,0:-410.211,-39.1339,0,-410.211,-39.1339,-410.211	1/2:215:0,120,95:0:0:120,95:4274,3396:-625.616,-277.258,-241.134,-348.715,0,-320.117	1/1:283:0,282,0:0:0:282,0:9933,0:-893.586,-84.8905,0,-893.586,-84.8905,-893.586	1/1:35:0,34,1:0:0:34,1:1209,36:-108.756,-10.235,0,-105.819,-6.93778,-105.518	1/1:211:0,211,0:0:0:211,0:7423,0:-668.124,-63.5173,0,-668.124,-63.5173,-668.124	1/2:108:0,65,42:0:0:65,42:2290,1496:-308.459,-122.019,-102.452,-186.522,0,-173.879	1/1:114:0,113,0:0:0:113,0:3944,0:-354.816,-34.0164,0,-354.816,-34.0164,-354.816	1/2:14:0,6,8:0:0:6,8:214,280:-40.579,-23.1311,-21.3249,-17.8016,0,-15.3933	1/1:29:0,29,0:0:0:29,0:1029,0:-92.9231,-8.72987,0,-92.9231,-8.72987,-92.9231	.:.:.:.:.:.:.:.	1/1:12:0,12,0:0:0:12,0:408,0:-37.0441,-3.61236,0,-37.0441,-3.61236,-37.0441	1/1:33:0,33,0:0:0:33,0:1178,0:-106.328,-9.93399,0,-106.328,-9.93399,-106.328	1/2:168:0,85,82:0:0:85,82:2986,2927:-481.731,-238.699,-213.112,-243.105,0,-218.42	1/2:103:0,54,49:0:0:54,49:1890,1744:-296.261,-142.494,-126.238,-154.12,0,-139.369	1/1:74:0,74,0:0:0:74,0:2595,0:-233.796,-22.2762,0,-233.796,-22.2762,-233.796	1/2:6:0,4,2:0:0:4,2:144,72:-17.9843,-6.23466,-5.03054,-12.1095,0,-11.5074	1/2:138:0,74,63:0:0:74,63:2642,2244:-398.294,-182.899,-160.623,-215.391,0,-196.426	1/1:71:0,70,0:0:0:70,0:2469,0:-222.104,-21.0721,0,-222.104,-21.0721,-222.104	1/1:185:0,185,0:0:0:185,0:6532,0:-587.842,-55.6906,0,-587.842,-55.6906,-587.842	1/1:61:0,61,0:0:0:61,0:2170,0:-195.566,-18.3628,0,-195.566,-18.3628,-195.566	1/2:63:0,32,31:0:0:32,31:1115,1104:-181.009,-90.3387,-80.7057,-91.0222,0,-81.6902	1/2:81:0,42,37:0:0:42,37:1473,1332:-228.587,-108.722,-96.0791,-119.898,0,-108.76	1/2:136:0,73,62:0:0:73,62:2566,2220:-389.899,-181.041,-159.066,-208.854,0,-190.19	1/1:181:0,180,1:0:0:180,1:6342,36:-570.458,-54.1854,0,-567.521,-50.8882,-567.22	1/2:81:0,48,33:0:0:48,33:1692,1168:-233.256,-95.4932,-81.0438,-138.116,0,-128.182	1/2:66:0,34,32:0:0:34,32:1203,1140:-191.261,-93.2762,-83.0412,-98.3395,0,-88.7066	1/1:102:0,101,0:0:0:101,0:3587,0:-322.698,-30.404,0,-322.698,-30.404,-322.698	1/2:13:0,9,4:0:0:9,4:321,144:-38.2747,-12.1095,-9.40023,-26.524,0,-25.3199	1/1:149:0,148,0:0:0:148,0:5221,0:-469.761,-44.5524,0,-469.761,-44.5524,-469.761	1/2:61:0,34,27:0:0:34,27:1145,964:-171.652,-78.8911,-68.656,-93.0514,0,-84.9236	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:128:0,72,55:0:0:72,55:2554,1972:-368.921,-160.84,-139.166,-208.166,0,-191.609	1/2:66:0,31,35:0:0:31,35:1051,1232:-185.861,-100.648,-91.3161,-85.5583,0,-75.0222	1/2:6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chr11	1326269	.	T	G	43407	PASS	AB=0.478478;ABP=20.7697;AC=48;AF=0.258065;AN=186;AO=2117;CIGAR=1X;DP=9374;DPB=9374;DPRA=0.829525;EPP=1792.95;EPPR=9689.13;GTI=1;LEN=1;MEANALT=1.09804;MQM=59.9839;MQMR=59.9885;NS=93;NUMALT=1;ODDS=0.675433;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75264;QR=259729;RO=7248;RPL=1719;RPP=1792.95;RPPR=9682.32;RPR=398;RUN=1;SAF=2117;SAP=4600.02;SAR=0;SRF=7247;SRP=15733.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:101:101,0:101:3615:0:0:0,-30.404,-325.555	0/1:98:56,42:56:2016:42:1512:-106.874,0,-152.212	0/0:351:351,0:351:12586:0:0:0,-105.662,-1132.56	0/1:168:83,85:83:2967:85:3031:-222.447,0,-216.634	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:119:119,0:119:4258:0:0:0,-35.8226,-383.397	0/0:177:177,0:177:6333:0:0:0,-53.2823,-570.06	0/1:110:58,52:58:2076:52:1839:-132.675,0,-153.997	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/1:94:42,52:42:1512:52:1845:-138.031,0,-108.078	0/1:90:40,50:40:1428:50:1762:-131.768,0,-101.725	0/0:74:74,0:74:2632:0:0:0,-22.2762,-236.996	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.024	0/0:83:81,0:81:2912:0:0:0,-24.3834,-261.999	0/1:33:15,18:15:531:18:639:-47.9043,0,-38.1879	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:40:18,22:18:648:22:765:-57.1265,0,-46.6107	0/1:300:151,149:151:5415:149:5325:-389.075,0,-397.169	0/0:158:156,2:156:5574:2:72:0,-40.726,-494.947	0/1:77:21,56:21:756:56:1994:-156.553,0,-45.1879	0/1:122:65,57:65:2328:57:2036:-146.787,0,-173.054	0/1:80:57,23:57:2029:23:824:-50.4009,0,-158.798	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.725	0/1:214:119,93:119:4272:93:3310:-233.941,0,-320.479	0/0:279:279,0:279:9960:0:0:0,-83.9874,-896.34	0/0:35:34,1:34:1215:1:36:0,-6.93777,-106.057	0/0:205:204,0:204:7298:0:0:0,-61.4101,-656.51	0/1:110:65,45:65:2319:45:1600:-111.177,0,-175.857	0/0:111:111,0:111:3973:0:0:0,-33.4143,-357.759	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	.:.:.:.:.:.:.:.	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:167:83,84:83:2988:84:2988:-218.882,0,-218.879	0/1:101:52,49:52:1860:49:1743:-126.75,0,-137.275	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:140:75,65:75:2700:65:2311:-166.106,0,-201.099	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/0:183:183,0:183:6558:0:0:0,-55.0885,-590.17	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/1:63:32,31:32:1148:31:1075:-78.0897,0,-84.6649	0/1:82:42,39:42:1500:39:1396:-101.196,0,-110.551	0/1:133:73,60:73:2624:60:2139:-152.74,0,-196.37	0/0:179:179,0:179:6428:0:0:0,-53.8844,-578.605	0/1:79:48,31:48:1724:31:1104:-75.8893,0,-131.664	0/1:63:32,31:32:1148:31:1078:-78.362,0,-84.6649	0/0:103:103,0:103:3695:0:0:0,-31.0061,-332.751	0/1:13:9,4:9:324:4:140:-9.03119,0,-25.5925	0/0:147:147,0:147:5288:0:0:0,-44.2514,-476.052	0/1:59:34,25:34:1208:25:896:-63.1996,0,-91.2653	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:122:70,52:70:2508:52:1859:-130.777,0,-189.247	0/1:63:30,33:30:1067:33:1180:-87.5432,0,-77.3763	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/0:130:130,0:130:4663:0:0:0,-39.1339,-419.83	0/1:101:50,51:50:1783:51:1799:-131.78,0,-130.348	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/1:132:80,52:80:2880:52:1860:-127.944,0,-219.7	0/1:135:80,55:80:2872:55:1953:-135.407,0,-218.075	0/1:71:33,38:33:1184:38:1364:-101.688,0,-85.4952	0/0:97:95,2:95:3416:2:63:0,-23.2168,-301.67	0/1:114:65,49:65:2324:49:1752:-123.645,0,-175.103	0/0:170:170,0:170:6100:0:0:0,-51.1751,-549.099	0/1:74:34,40:34:1224:40:1408:-104.738,0,-88.1908	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.357	0/1:63:35,28:35:1260:28:993:-70.7176,0,-94.7406	0/1:26:12,14:12:432:14:492:-36.7856,0,-31.3944	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/1:122:64,58:64:2287:58:2072:-150.025,0,-169.365	0/1:132:74,58:74:2615:58:2035:-143.686,0,-195.86	0/0:210:210,0:210:7522:0:0:0,-63.2163,-677.019	0/0:185:185,0:185:6648:0:0:0,-55.6905,-598.394	0/1:143:71,71:71:2552:71:2516:-183.585,0,-186.824	0/1:39:25,14:25:882:14:504:-33.9579,0,-67.9564	0/1:171:65,106:65:2336:106:3773:-288.291,0,-159.023	0/0:160:160,0:160:5729:0:0:0,-48.1648,-515.723	0/0:164:164,0:164:5875:0:0:0,-49.3689,-528.859	0/1:49:27,22:27:963:22:792:-56.8552,0,-72.2355	0/0:66:66,0:66:2354:0:0:0,-19.868,-212.118	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.295	0/1:121:60,59:60:2156:59:2097:-152.816,0,-158.125	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:66:35,31:35:1260:31:1097:-79.17,0,-93.8375	0/0:90:90,0:90:3240:0:0:0,-27.0927,-291.819	0/0:75:75,0:75:2700:0:0:0,-22.5772,-243.243	0/1:119:66,53:66:2359:53:1883:-133.924,0,-176.745	0/1:67:25,42:25:896:42:1488:-114.043,0,-60.7913	0/0:108:108,0:108:3857:0:0:0,-32.5112,-347.325	0/0:102:102,0:102:3640:0:0:0,-30.7051,-327.803
chr11	1341739	.	T	C	65149	PASS	AB=0.541317;ABP=36.565;AC=139;AF=0.747312;AN=186;AO=3141;CIGAR=1X;DP=4184;DPB=4184;DPRA=45.4674;EPP=6823.61;EPPR=2263.51;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.993;MQMR=60;NS=93;NUMALT=1;ODDS=3.29418;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111998;QR=37312;RO=1041;RPL=0;RPP=6823.61;RPPR=2263.51;RPR=3141;RUN=1;SAF=0;SAP=6823.61;SAR=3141;SRF=0;SRP=2263.51;SRR=1041;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:55:32,23:32:1148:23:806:-56.3016,0,-87.0732	1/1:68:0,68:0:0:68:2421:-218.145,-20.47,0	0/1:152:64,88:64:2296:88:3140:-237.07,0,-161.145	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:44:0,44:0:0:44:1559:-140.601,-13.2453,0	1/1:48:1,47:1:36:47:1680:-147.889,-10.8512,0	1/1:101:0,101:0:0:101:3611:-325.196,-30.404,0	0/1:52:19,33:19:675:33:1175:-90.4034,0,-45.4234	1/1:50:0,50:0:0:50:1787:-161.112,-15.0515,0	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	0/1:26:17,9:17:608:9:324:-21.6791,0,-47.2252	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:26:0,26:0:0:26:912:-82.3941,-7.82678,0	0/1:26:11,15:11:396:15:536:-40.748,0,-28.156	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:57:29,28:29:1044:28:1004:-73.5172,0,-77.1161	1/1:82:0,82:0:0:82:2934:-264.293,-24.6845,0	0/1:43:13,30:13:468:30:1067:-83.3969,0,-29.5154	0/1:21:11,10:11:396:10:338:-24.4234,0,-29.6611	0/1:43:11,32:11:396:32:1143:-90.2344,0,-23.0385	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	0/1:122:60,62:60:2160:62:2224:-163.697,0,-157.941	1/1:89:0,88:0:0:88:3123:-280.935,-26.4906,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:127:0,127:0:0:127:4526:-407.506,-38.2308,0	0/1:87:35,52:35:1260:52:1864:-141.85,0,-87.5159	1/1:52:0,52:0:0:52:1856:-167.32,-15.6536,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:7:0,6:0:0:6:212:-19.0659,-1.80618,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:72:40,32:40:1440:32:1136:-80.8747,0,-108.224	0/1:94:45,49:45:1616:49:1760:-130.387,0,-117.433	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:65:31,34:31:1116:34:1216:-90.1796,0,-81.1847	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:73:0,73:0:0:73:2601:-234.337,-21.9752,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:29:13,16:13:468:16:572:-43.0836,0,-33.7298	0/1:33:18,15:18:633:15:524:-37.5543,0,-47.3611	0/1:70:33,37:33:1188:37:1320:-98.0298,0,-86.1565	1/1:109:0,109:0:0:109:3924:-353.351,-32.8123,0	0/1:66:32,34:32:1143:34:1220:-90.2388,0,-83.3107	0/1:70:31,39:31:1100:39:1404:-105.587,0,-78.2382	1/1:96:0,96:0:0:96:3416:-307.653,-28.8989,0	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:67:0,67:0:0:67:2386:-214.997,-20.169,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:57:21,36:21:756:36:1288:-99.0649,0,-51.2085	0/1:32:16,16:16:567:16:576:-42.542,0,-41.7278	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:25:1,24:1:36:24:847:-72.9504,-3.92748,0	0/1:66:33,33:33:1184:33:1169:-85.6473,0,-87.0003	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:157:63,94:63:2241:94:3369:-256.162,0,-154.69	0/1:90:32,58:32:1133:58:2072:-159.658,0,-75.184	0/1:51:25,26:25:896:26:928:-68.4824,0,-65.6078	1/1:59:0,59:0:0:59:2081:-187.556,-17.7608,0	0/1:70:24,46:24:860:46:1652:-127.896,0,-56.6497	0/1:26:14,12:14:500:12:432:-31.3944,0,-37.5094	0/1:9:2,7:2:72:7:239:-19.1334,0,-4.12745	1/1:34:0,34:0:0:34:1215:-109.656,-10.235,0	0/1:45:30,15:30:1072:15:532:-34.6667,0,-83.2461	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:40:0,40:0:0:40:1416:-127.735,-12.0412,0	0/1:33:12,21:12:432:21:752:-58.0723,0,-29.2872	0/1:40:19,21:19:684:21:719:-52.9836,0,-49.8491	1/1:79:0,79:0:0:79:2804:-252.597,-23.7814,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:70:21,49:21:756:49:1751:-136.801,0,-47.2951	.:.:.:.:.:.:.:.	0/1:65:31,34:31:1112:34:1216:-90.1796,0,-80.8244	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:94:0,94:0:0:94:3353:-301.986,-28.2968,0	0/1:60:30,30:30:1080:30:1080:-79.4515,0,-79.4515	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:45:0,45:0:0:45:1590:-143.389,-13.5464,0	0/1:53:23,30:23:828:30:1076:-81.1983,0,-58.8895	1/1:24:0,24:0:0:24:839:-75.8267,-7.22472,0	0/1:34:19,15:19:680:15:540:-38.7015,0,-51.2941	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:32:22,10:22:788:10:352:-22.3852,0,-61.6118	0/1:36:24,12:24:864:12:432:-28.3841,0,-67.2455	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:28:0,28:0:0:28:980:-88.5102,-8.42884,0
chr11	1395319	.	C	T	46514	PASS	AB=0.508534;ABP=6.4202;AC=50;AF=0.265957;AN=188;AO=2749;CIGAR=1X;DP=10151;DPB=10151;DPRA=1.05474;EPP=5955.03;EPPR=15980.8;GTI=1;LEN=1;MEANALT=1.07547;MQM=57.1557;MQMR=59.9496;NS=94;NUMALT=1;ODDS=1.93449;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98210;QR=263945;RO=7394;RPL=2;RPP=5955.03;RPPR=15998.1;RPR=2747;RUN=1;SAF=2749;SAP=5972.39;SAR=0;SRF=7392;SRP=16041.5;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:183:105,78:105:3760:78:2804:-197.284,0,-283.511	0/0:111:111,0:111:3964:0:0:0,-33.4143,-356.952	0/1:145:71,74:71:2532:74:2655:-194.799,0,-184.482	0/0:48:47,1:47:1684:1:36:0,-10.8512,-148.249	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.849	0/0:123:123,0:123:4380:0:0:0,-37.0267,-394.376	0/0:305:305,0:305:10886:0:0:0,-91.8141,-979.644	0/1:93:54,39:54:1916:39:1389:-97.2607,0,-144.722	0/0:150:150,0:150:5348:0:0:0,-45.1545,-481.411	0/0:89:89,0:89:3166:0:0:0,-26.7917,-285.165	0/1:83:48,35:48:1706:35:1260:-88.5155,0,-128.348	0/1:90:38,52:38:1341:52:1864:-140.941,0,-93.8953	0/0:144:144,0:144:5135:0:0:0,-43.3483,-462.294	0/0:97:97,0:97:3463:0:0:0,-29.1999,-311.882	0/0:88:87,1:87:3090:1:36:0,-22.8924,-274.73	0/1:142:67,75:67:2395:75:2688:-199.28,0,-173.06	0/0:110:110,0:110:3938:0:0:0,-33.1133,-354.611	0/1:59:35,24:35:1252:24:864:-60.2263,0,-95.2243	0/1:209:107,102:107:3832:102:3664:-265.902,0,-282.161	0/0:175:175,0:175:6267:0:0:0,-52.6802,-564.119	0/1:43:10,33:10:360:33:1165:-92.1583,0,-19.8	0/1:35:17,18:17:604:18:644:-47.716,0,-44.1522	0/1:155:53,102:53:1884:102:3621:-279.269,0,-123.177	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.902	0/1:289:153,136:153:5456:136:4857:-349.332,0,-404.088	0/0:224:224,0:224:8012:0:0:0,-67.4307,-721.099	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.108	0/0:193:193,0:193:6920:0:0:0,-58.0988,-622.865	0/1:147:74,73:74:2644:73:2616:-190.518,0,-193.956	0/0:83:82,0:82:2896:0:0:0,-24.6845,-260.516	0/1:7:4,3:4:144:3:104:-7.54725,0,-11.2064	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:250:130,120:130:4644:120:4248:-306.893,0,-342.866	0/1:155:82,73:82:2928:73:2612:-188.413,0,-217.096	0/0:83:83,0:83:2979:0:0:0,-24.9855,-268.341	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:167:80,87:80:2864:87:3108:-229.048,0,-207.725	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/0:244:243,0:243:8681:0:0:0,-73.1503,-780.912	0/0:88:87,0:87:3098:0:0:0,-26.1896,-278.685	0/1:98:42,56:42:1482:56:2008:-151.017,0,-104.172	0/1:81:49,32:49:1756:32:1140:-78.444,0,-133.94	0/1:107:53,54:53:1891:54:1916:-139.922,0,-138.257	0/0:156:156,0:156:5580:0:0:0,-46.9607,-502.323	0/1:99:44,55:44:1564:55:1972:-147.504,0,-111.25	0/1:155:71,84:71:2532:84:2981:-221.426,0,-181.472	0/0:137:137,0:137:4900:0:0:0,-41.2411,-441.15	0/1:7:5,2:5:180:2:72:-4.72458,0,-14.4449	0/0:122:122,0:122:4355:0:0:0,-36.7257,-392.125	0/1:51:26,25:26:932:25:877:-63.7863,0,-68.846	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:155:72,83:72:2552:83:2942:-218.261,0,-183.272	0/1:8:5,3:5:176:3:108:-7.65966,0,-13.7768	1/1:3:0,3:0:0:3:108:-10.0724,-0.90309,0	0/1:17:10,7:10:356:7:248:-17.5408,0,-27.2637	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/1:134:59,75:59:2103:75:2680:-200.4,0,-149.198	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	0/1:170:75,95:75:2684:95:3416:-256.307,0,-190.121	0/1:229:120,109:120:4300:109:3878:-277.943,0,-318.24	0/1:106:65,40:65:2313:40:1432:-97.0418,0,-176.461	0/0:84:83,0:83:2960:0:0:0,-24.9855,-266.418	0/1:179:79,100:79:2802:100:3553:-265.411,0,-198.45	0/1:115:38,77:38:1337:77:2764:-213.776,0,-86.0095	0/1:63:32,31:32:1148:31:1114:-81.363,0,-84.6649	0/0:112:112,0:112:3996:0:0:0,-33.7154,-359.794	0/1:219:113,105:113:4022:105:3759:-271.98,0,-296.334	0/1:28:18,10:18:640:10:352:-23.3993,0,-49.5005	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.793	0/1:106:52,54:52:1864:54:1924:-141.35,0,-136.13	0/1:99:38,61:38:1360:61:2162:-164.621,0,-92.8986	0/0:204:204,0:204:7280:0:0:0,-61.4101,-655.255	0/0:104:104,0:104:3691:0:0:0,-31.3071,-332.35	0/1:156:95,61:95:3367:61:2196:-150.903,0,-256.288	0/1:2:1,1:1:36:1:36:-2.99521,0,-2.99621	0/1:137:62,75:62:2220:75:2700:-200.691,0,-158.823	0/0:119:119,0:119:4256:0:0:0,-35.8226,-383.15	0/0:185:184,1:184:6592:1:36:0,-52.0949,-589.728	0/1:130:64,66:64:2286:66:2359:-171.873,0,-166.866	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/0:145:145,0:145:5152:0:0:0,-43.6493,-463.716	0/1:191:100,89:100:3580:89:3188:-228.243,0,-265.148	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/1:91:49,42:49:1747:42:1504:-108.188,0,-130.12	0/0:94:94,0:94:3354:0:0:0,-28.2968,-301.586	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:105:51,54:51:1810:54:1931:-141.139,0,-131.572	0/1:91:25,66:25:900:66:2367:-184.203,0,-53.9273	0/0:156:156,0:156:5588:0:0:0,-46.9607,-503.042	0/0:142:140,2:140:5010:2:72:0,-35.9145,-444.2
chr11	1395325	.	G	A	47790.4	PASS	AB=0.512637;ABP=10.5842;AC=50;AF=0.265957;AN=188;AO=2808;CIGAR=1X;DP=10222;DPB=10222;DPRA=1.03878;EPP=6074.47;EPPR=15885.8;GTI=1;LEN=1;MEANALT=1.12963;MQM=57.0869;MQMR=59.9507;NS=94;NUMALT=1;ODDS=0.849374;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100435;QR=263539;RO=7406;RPL=3;RPP=6074.47;RPPR=15903;RPR=2805;RUN=1;SAF=2808;SAP=6100.5;SAR=0;SRF=7404;SRP=16067.6;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:185:104,81:104:3702:81:2912:-206.389,0,-277.69	0/0:112:112,0:112:3971:0:0:0,-33.7154,-357.534	0/1:147:72,74:72:2531:74:2641:-192.74,0,-183.876	0/0:47:46,1:46:1652:1:36:0,-10.5501,-145.37	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.138	0/0:124:124,0:124:4421:0:0:0,-37.3277,-398.062	0/0:305:305,0:305:10835:0:0:0,-91.8141,-975.051	0/1:91:53,38:53:1863:38:1360:-95.2828,0,-140.55	0/0:151:151,0:151:5348:0:0:0,-45.4555,-481.407	0/0:86:86,0:86:3054:0:0:0,-25.8886,-275.087	0/1:84:48,36:48:1686:36:1281:-90.0538,0,-126.736	0/1:92:36,56:36:1296:56:2012:-153.602,0,-89.2492	0/0:146:146,0:146:5149:0:0:0,-43.9504,-463.551	0/0:96:96,0:96:3456:0:0:0,-28.8989,-311.251	0/0:89:88,1:88:3156:1:36:0,-23.1934,-280.666	0/1:143:67,76:67:2393:76:2732:-202.965,0,-172.578	0/0:109:109,0:109:3924:0:0:0,-32.8123,-353.351	0/1:60:36,24:36:1292:24:864:-59.9253,0,-98.522	0/1:211:108,103:108:3857:103:3659:-264.694,0,-283.807	0/0:174:174,0:174:6218:0:0:0,-52.3792,-559.709	0/1:44:10,34:10:356:34:1209:-95.7822,0,-19.1359	0/1:37:17,20:17:593:20:716:-53.5887,0,-42.5543	0/1:162:56,106:56:1986:106:3785:-291.469,0,-130.239	0/0:57:57,0:57:1995:0:0:0,-17.1587,-179.818	0/1:295:154,139:154:5471:139:4955:-356.102,0,-403.891	0/0:217:217,0:217:7652:0:0:0,-65.3235,-688.717	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/0:194:194,0:194:6923:0:0:0,-58.3998,-623.134	0/1:150:74,76:74:2607:76:2702:-196.814,0,-189.72	0/0:82:82,0:82:2869:0:0:0,-24.6845,-258.442	0/1:7:4,3:4:144:3:108:-7.91676,0,-11.2064	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:251:132,119:132:4680:119:4280:-309.425,0,-345.8	0/1:156:81,75:81:2855:75:2700:-196.028,0,-210.224	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:165:80,84:80:2872:84:3005:-220.322,0,-208.988	0/0:37:36,1:36:1273:1:36:0,-7.53983,-111.273	0/0:245:245,0:245:8740:0:0:0,-73.7523,-786.559	0/0:87:87,0:87:3083:0:0:0,-26.1896,-277.692	0/1:98:42,56:42:1508:56:2012:-151.376,0,-106.514	0/1:84:50,34:50:1770:34:1220:-84.7356,0,-134.292	0/1:109:54,55:54:1924:55:1968:-144.354,0,-140.625	0/0:159:159,0:159:5644:0:0:0,-47.8638,-508.076	0/1:98:43,55:43:1510:55:1961:-146.816,0,-106.688	0/1:157:71,86:71:2529:86:3088:-230.435,0,-180.598	0/0:132:132,0:132:4748:0:0:0,-39.736,-427.47	0/1:7:5,2:5:180:2:72:-4.72458,0,-14.4449	0/0:121:121,0:121:4310:0:0:0,-36.4246,-388.075	0/1:53:26,27:26:932:27:972:-71.7309,0,-68.2439	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:156:72,84:72:2562:84:3009:-223.987,0,-183.866	0/1:8:5,3:5:180:3:108:-7.65966,0,-14.1438	1/1:3:0,3:0:0:3:108:-10.0724,-0.90309,0	0/1:17:10,7:10:360:7:252:-17.905,0,-27.6268	0/0:94:94,0:94:3361:0:0:0,-28.2968,-302.705	0/1:138:59,79:59:2120:79:2837:-213.306,0,-149.524	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	0/1:176:79,97:79:2820:97:3468:-259.182,0,-200.537	0/1:230:121,108:121:4322:108:3871:-277.187,0,-320.006	0/1:109:68,41:68:2399:41:1446:-97.4022,0,-183.35	0/0:83:83,0:83:2935:0:0:0,-24.9855,-264.381	0/1:180:80,100:80:2823:100:3562:-266.084,0,-200.117	0/1:116:35,80:35:1241:80:2875:-223.452,0,-77.0144	0/1:64:32,32:32:1125:32:1148:-84.1042,0,-82.2901	0/0:111:111,0:111:3942:0:0:0,-33.4143,-354.967	0/1:222:112,110:112:4005:110:3914:-284.926,0,-293.809	0/1:30:19,11:19:684:11:392:-26.3956,0,-52.8594	0/0:56:56,0:56:1976:0:0:0,-16.8577,-178.112	0/1:106:52,54:52:1845:54:1936:-142.098,0,-134.419	0/1:103:39,64:39:1373:64:2270:-173.105,0,-92.8605	0/0:206:206,0:206:7373:0:0:0,-62.0122,-663.616	0/0:104:103,0:103:3693:0:0:0,-31.0061,-332.165	0/1:160:97,63:97:3458:63:2264:-155.799,0,-263.265	0/1:2:1,1:1:36:1:36:-2.99521,0,-2.99621	0/1:135:59,76:59:2109:76:2713:-202.463,0,-149.438	0/0:119:119,0:119:4249:0:0:0,-35.8226,-382.586	0/0:190:188,1:188:6673:1:36:0,-53.6587,-597.046	0/1:129:62,67:62:2224:67:2385:-174.51,0,-161.591	0/0:103:103,0:103:3685:0:0:0,-31.0061,-331.851	0/0:147:147,0:147:5174:0:0:0,-44.2514,-465.799	0/1:194:103,91:103:3681:91:3257:-233.201,0,-273.001	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.763	0/1:94:50,44:50:1788:44:1584:-114.471,0,-132.906	0/0:95:95,0:95:3405:0:0:0,-28.5978,-306.172	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:103:48,55:48:1681:55:1946:-144.087,0,-120.566	0/1:93:25,68:25:896:68:2444:-190.523,0,-52.9646	0/0:161:161,0:161:5730:0:0:0,-48.4658,-515.817	0/0:141:139,2:139:4969:2:72:0,-35.6134,-440.512
chr11	1430676	.	T	C	31877.1	PASS	AB=0.449799;ABP=79.3171;AC=47;AF=0.25;AN=188;AO=1571;CIGAR=1X;DP=6399;DPB=6399;DPRA=1.15657;EPP=1066.12;EPPR=4830.09;GTI=0;LEN=1;MEANALT=1.06;MQM=59.9656;MQMR=59.9807;NS=94;NUMALT=1;ODDS=3.49453;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55581;QR=172589;RO=4822;RPL=1224;RPP=1066.12;RPPR=4830.09;RPR=347;RUN=1;SAF=1571;SAP=3414.39;SAR=0;SRF=4822;SRP=10473.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:49,1:49:1760:1:36:0,-11.4532,-155.068	0/1:147:92,55:92:3292:55:1943:-130.894,0,-252.248	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.133	0/1:126:75,51:75:2691:51:1806:-124.891,0,-204.504	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/0:145:145,0:145:5187:0:0:0,-43.6493,-466.965	0/1:51:39,12:39:1396:12:428:-23.5063,0,-110.577	0/0:115:115,0:115:4107:0:0:0,-34.6184,-369.815	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:53:34,19:34:1220:19:656:-43.4048,0,-94.1522	0/1:43:19,23:19:684:23:799:-59.225,0,-48.8872	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:43:24,19:24:860:19:680:-48.5849,0,-64.7775	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.4848	0/1:133:72,61:72:2563:61:2165:-155.071,0,-190.883	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.861	0/1:56:20,36:20:716:36:1292:-99.7261,0,-47.91	0/1:71:34,37:34:1206:37:1316:-97.3687,0,-87.4713	0/1:131:89,42:89:3162:42:1495:-95.4089,0,-245.37	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:221:133,88:133:4763:88:3102:-212.882,0,-362.299	0/0:118:118,0:118:4231:0:0:0,-35.5215,-380.968	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:164:164,0:164:5888:0:0:0,-49.3689,-530.028	0/1:144:69,75:69:2480:75:2666:-196.837,0,-180.103	0/0:134:134,0:134:4792:0:0:0,-40.338,-431.435	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:165:83,82:83:2975:82:2901:-211.636,0,-218.312	0/1:114:73,41:73:2624:41:1472:-98.4587,0,-202.089	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:87:45,42:45:1620:42:1474:-106.741,0,-119.9	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:154:154,0:154:5486:0:0:0,-46.3586,-493.869	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:37:27,10:27:972:10:360:-21.6062,0,-76.6598	0/1:76:47,29:47:1684:29:1032:-70.3152,0,-128.969	0/1:83:45,38:45:1616:38:1329:-94.922,0,-120.745	0/0:131:131,0:131:4692:0:0:0,-39.4349,-422.44	0/1:97:64,33:64:2304:33:1176:-76.9479,0,-178.421	0/1:145:72,73:72:2575:73:2597:-190.329,0,-188.35	0/0:166:166,0:166:5925:0:0:0,-49.971,-533.359	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.018	0/1:35:24,11:24:860:11:396:-25.4467,0,-67.1858	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:75:40,35:40:1424:35:1247:-89.9568,0,-105.88	0/1:23:10,13:10:352:13:464:-35.1738,0,-25.0945	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:7:4,3:4:144:3:90:-6.29047,0,-11.2064	0/0:64:64,0:64:2271:0:0:0,-19.2659,-204.652	0/1:69:28,41:28:1008:41:1444:-109.482,0,-70.2653	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:129:78,51:78:2792:51:1807:-124.078,0,-212.684	0/1:164:87,76:87:3113:76:2711:-194.806,0,-230.967	0/1:68:44,24:44:1554:24:860:-57.2518,0,-119.68	0/0:37:36,0:36:1292:0:0:0,-10.8371,-116.37	0/1:104:63,41:63:2255:41:1450:-99.4873,0,-171.905	0/1:51:13,38:13:464:38:1352:-106.628,0,-26.745	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:80:39,41:39:1392:41:1440:-105.811,0,-101.497	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/1:42:23,19:23:824:19:663:-47.3502,0,-61.8401	0/1:85:49,36:49:1760:36:1271:-89.1045,0,-132.967	0/0:121:121,0:121:4319:0:0:0,-36.4246,-388.887	0/0:108:106,0:106:3799:0:0:0,-31.9092,-341.747	0/1:102:47,55:47:1676:55:1940:-144.17,0,-120.422	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:65:35,30:35:1244:30:1080:-77.9463,0,-92.6944	0/0:93:93,0:93:3323:0:0:0,-27.9958,-299.283	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/1:75:26,49:26:932:49:1728:-133.224,0,-61.6183	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:110:64,45:64:2296:45:1586:-109.857,0,-173.729	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.371	0/1:41:24,17:24:849:17:575:-39.7246,0,-64.3856	0/0:38:37,1:37:1332:1:36:0,-7.84086,-116.584	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:43:22,21:22:792:21:729:-52.9844,0,-58.6614	0/1:35:12,23:12:432:23:780:-59.9755,0,-28.6851	0/0:51:51,0:51:1827:0:0:0,-15.3525,-164.71	0/0:60:59,1:59:2111:1:27:0,-15.362,-187.559
chr11	1430688	.	G	A	99225.5	PASS	AB=0.541452;ABP=55.2175;AC=141;AF=0.75;AN=188;AO=4778;CIGAR=1X;DP=6384;DPB=6384;DPRA=0;EPP=10360.9;EPPR=3488.22;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9812;MQMR=59.9913;NS=94;NUMALT=1;ODDS=1.51825;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170292;QR=57407;RO=1605;RPL=4776;RPP=10360.9;RPPR=3488.22;RPR=2;RUN=1;SAF=4778;SAP=10378.3;SAR=0;SRF=1605;SRP=3488.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:1,53:1:36:53:1877:-165.59,-12.6573,0	0/1:146:55,91:55:1976:91:3222:-246.251,0,-134.164	1/1:120:0,120:0:0:120:4262:-383.758,-36.1236,0	0/1:123:51,72:51:1817:72:2584:-195.782,0,-126.783	1/1:72:0,72:0:0:72:2546:-229.388,-21.6742,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:71:0,71:0:0:71:2536:-228.491,-21.3731,0	1/1:145:0,145:0:0:145:5153:-463.908,-43.6494,0	0/1:53:14,39:14:500:39:1381:-108.626,0,-29.3816	1/1:112:0,112:0:0:112:3994:-359.647,-33.7154,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:53:19,34:19:680:34:1208:-93.0701,0,-45.5746	0/1:44:25,19:25:892:19:660:-46.4753,0,-67.3544	1/1:35:0,35:0:0:35:1228:-110.821,-10.5361,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:30:0,30:0:0:30:1065:-96.1598,-9.0309,0	0/1:42:18,24:18:640:24:845:-63.7238,0,-45.2861	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:19:10,9:10:360:9:310:-22.5131,0,-27.0247	0/1:135:64,71:64:2276:71:2526:-186.95,0,-164.455	1/1:83:0,83:0:0:83:2949:-265.643,-24.9855,0	0/1:59:40,19:40:1431:19:671:-42.9557,0,-111.326	0/1:72:38,34:38:1364:34:1220:-88.4326,0,-101.387	0/1:130:41,88:41:1472:88:3126:-242.372,0,-93.5835	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:217:91,126:91:3245:126:4505:-340.293,0,-226.947	1/1:120:0,120:0:0:120:4304:-387.536,-36.1236,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:161:0,161:0:0:161:5743:-516.986,-48.4658,0	0/1:142:76,66:76:2728:66:2372:-170.991,0,-203.016	1/1:134:0,134:0:0:134:4812:-433.232,-40.338,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:170:84,86:84:2982:86:3065:-224.903,0,-217.438	0/1:116:41,75:41:1472:75:2672:-205.807,0,-97.8567	1/1:24:0,24:0:0:24:852:-77.0004,-7.22472,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:90:45,45:45:1616:45:1597:-116.926,0,-118.634	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:150:0,150:0:0:150:5342:-480.913,-45.1545,0	1/1:53:0,53:0:0:53:1874:-168.937,-15.9546,0	0/1:38:11,27:11:392:27:968:-75.9982,0,-24.1809	0/1:77:30,47:30:1076:47:1634:-124.162,0,-73.9735	0/1:85:39,46:39:1395:46:1641:-122.389,0,-100.261	1/1:129:0,129:0:0:129:4621:-416.051,-38.8329,0	0/1:99:35,64:35:1260:64:2292:-176.739,0,-83.9035	0/1:147:76,71:76:2728:71:2519:-182.709,0,-201.511	1/1:165:0,165:0:0:165:5882:-529.49,-49.67,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:90:0,90:0:0:90:3186:-286.958,-27.0927,0	0/1:33:11,22:11:392:22:777:-60.3164,0,-25.6861	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:71:34,37:34:1220:37:1309:-96.7364,0,-88.7337	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:61:0,61:0:0:61:2179:-196.376,-18.3628,0	0/1:69:41,28:41:1453:28:1008:-70.2653,0,-110.293	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:129:51,78:51:1802:78:2775:-211.154,0,-123.625	0/1:170:80,90:80:2864:90:3232:-239.926,0,-206.822	0/1:67:24,43:24:864:43:1544:-119.084,0,-57.9136	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:104:42,62:42:1500:62:2209:-167.766,0,-103.987	0/1:51:38,13:38:1368:13:454:-25.8378,0,-108.068	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:82:42,40:42:1504:40:1418:-103.231,0,-110.97	0/1:14:8,6:8:288:6:203:-14.3859,0,-22.053	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:44:20,24:20:720:24:860:-64.4765,0,-51.8835	0/1:86:37,49:37:1319:49:1748:-131.705,0,-93.1226	1/1:121:0,121:0:0:121:4336:-390.415,-36.4246,0	1/1:109:0,109:0:0:109:3880:-349.397,-32.8123,0	0/1:100:57,43:57:2044:43:1533:-108.16,0,-154.129	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:65:31,34:31:1116:34:1193:-88.1061,0,-81.1847	1/1:90:0,90:0:0:90:3217:-289.746,-27.0927,0	1/1:94:0,94:0:0:94:3351:-301.807,-28.2968,0	0/1:72:49,23:49:1747:23:824:-52.8092,0,-135.839	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:43:0,43:0:0:43:1532:-138.173,-12.9443,0	0/1:109:44,65:44:1568:65:2320:-176.248,0,-108.599	1/1:37:0,37:0:0:37:1312:-118.382,-11.1381,0	0/1:41:17,24:17:608:24:841:-63.6641,0,-42.7098	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:43:21,22:21:756:22:792:-58.6614,0,-55.4229	0/1:34:23,11:23:820:11:392:-25.385,0,-63.8875	1/1:49:0,49:0:0:49:1737:-156.612,-14.7505,0	1/1:58:1,57:1:36:57:2044:-180.634,-13.8615,0
chr11	1430806	.	C	A	20129.5	PASS	AB=0.456044;ABP=48.826;AC=48;AF=0.255319;AN=188;AO=1251;CIGAR=1X;DP=5418;DPB=5418;DPRA=1.12722;EPP=2684.89;EPPR=8951.9;GTI=0;LEN=1;MEANALT=1.03774;MQM=59.9504;MQMR=59.9981;NS=94;NUMALT=1;ODDS=2.11431;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44629;QR=148641;RO=4165;RPL=3;RPP=2693.53;RPPR=8951.9;RPR=1248;RUN=1;SAF=1;SAP=2710.84;SAR=1250;SRF=0;SRP=9047.19;SRR=4165;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:77:77,0:77:2739:0:0:0,-23.1793,-246.753	0/1:42:23,19:23:828:19:675:-48.4337,0,-62.2009	0/0:138:138,0:138:4912:0:0:0,-41.5421,-442.229	0/1:117:62,55:62:2206:55:1967:-142.084,0,-163.583	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/0:65:64,1:64:2304:1:36:0,-15.9687,-204.022	0/0:84:84,0:84:2968:0:0:0,-25.2865,-267.353	0/1:52:31,21:31:1112:21:748:-51.9917,0,-84.7378	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:39:39,0:39:1389:0:0:0,-11.7402,-125.307	0/1:69:46,23:46:1644:23:824:-53.7122,0,-127.478	0/1:56:27,29:27:960:29:1036:-76.6962,0,-69.8586	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/0:66:65,1:65:2315:1:36:0,-16.2697,-205.012	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.509	0/1:13:9,4:9:316:4:144:-9.40023,0,-24.8655	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:22:13,9:13:460:9:324:-22.8832,0,-35.1127	0/1:51:27,24:27:972:24:860:-62.3693,0,-72.4454	0/0:115:115,0:115:4085:0:0:0,-34.6184,-367.837	0/1:69:18,51:18:648:51:1812:-142.59,0,-37.8808	0/1:61:36,25:36:1296:25:896:-62.5975,0,-98.5811	0/1:52:37,15:37:1324:15:531:-32.4683,0,-103.809	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:202:115,87:115:4128:87:3116:-219.859,0,-310.895	0/0:144:144,0:144:5145:0:0:0,-43.3483,-463.191	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:157:156,1:156:5588:1:36:0,-43.6634,-499.444	0/1:63:37,26:37:1309:26:923:-64.4219,0,-99.1447	0/0:75:75,0:75:2654:0:0:0,-22.5772,-239.104	0/1:7:4,3:4:135:3:108:-7.96796,0,-10.3753	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/1:150:74,76:74:2637:76:2711:-199.079,0,-192.421	0/1:98:82,16:82:2935:16:568:-21.9509,0,-234.883	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:79:47,32:47:1684:32:1148:-79.8485,0,-128.066	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:86:86,0:86:3069:0:0:0,-25.8886,-276.437	0/0:36:36,0:36:1273:0:0:0,-10.8371,-114.871	0/1:39:16,23:16:576:23:828:-63.1039,0,-40.4348	0/1:80:47,33:47:1673:33:1180:-82.0548,0,-126.773	0/1:54:28,26:28:989:26:932:-67.9432,0,-73.0664	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.61	0/1:70:50,19:50:1788:19:680:-40.5102,0,-140.187	0/1:52:30,22:30:1080:22:788:-55.5912,0,-81.8597	0/0:95:95,0:95:3383:0:0:0,-28.5978,-304.686	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.403	0/1:33:17,16:17:608:16:538:-38.8022,0,-45.118	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:68:31,37:31:1108:37:1316:-98.2718,0,-79.561	0/1:32:15,17:15:531:17:596:-44.3343,0,-38.4889	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:20:11,9:11:387:9:324:-23.4853,0,-29.1453	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:99:41,58:41:1464:58:2070:-156.765,0,-102.254	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:82:42,39:42:1503:39:1396:-101.196,0,-110.821	0/1:57:36,21:36:1283:21:752:-50.8475,0,-98.6139	0/1:21:17,4:17:612:4:144:-6.99199,0,-49.0918	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:68:30,38:30:1076:38:1364:-102.591,0,-76.6828	0/1:72:23,49:23:828:49:1753:-136.38,0,-53.17	0/1:30:17,13:17:608:13:468:-33.4287,0,-46.0211	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:38:19,19:19:684:19:675:-49.6378,0,-50.4512	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:131:130,1:130:4628:1:32:0,-36.2356,-413.484	0/1:46:27,19:27:968:19:671:-46.8386,0,-73.59	0/1:94:54,40:54:1936:40:1409:-98.8082,0,-146.22	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.903	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:36:18,18:18:635:18:648:-47.8148,0,-46.6399	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:41:23,18:23:809:18:639:-45.496,0,-60.7861	0/0:64:62,2:62:2180:2:72:0,-12.4292,-189.628	0/0:143:143,0:143:5132:0:0:0,-43.0473,-462.02	0/1:59:28,31:28:1004:31:1099:-81.4587,0,-72.9151	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/1:85:45,40:45:1612:40:1436:-103.95,0,-119.783	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:63:29,34:29:1032:34:1212:-90.4209,0,-74.2286	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.11	0/1:79:50,29:50:1757:29:1036:-69.7725,0,-134.63	0/1:58:26,32:26:917:32:1140:-85.4491,0,-65.3849	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776
chr11	1641372	.	G	A	38299.6	PASS	AB=0.495731;ABP=3.58501;AC=47;AF=0.25;AN=188;AO=1812;CIGAR=1X;DP=6918;DPB=6918;DPRA=1.36157;EPP=245.683;EPPR=727.412;GTI=1;LEN=1;MEANALT=1.01786;MQM=50.3659;MQMR=53.6748;NS=94;NUMALT=1;ODDS=0.613077;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64688;QR=181209;RO=5105;RPL=1812;RPP=3937.72;RPPR=11088.4;RPR=0;RUN=1;SAF=1131;SAP=245.683;SAR=681;SRF=3205;SRP=727.412;SRR=1900;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1021:0:0:0,-8.72987,-91.1922	0/1:31:21,10:21:752:10:360:-21.5547,0,-58.4586	0/0:81:81,0:81:2883:0:0:0,-24.3834,-258.57	0/1:77:36,41:36:1287:41:1472:-104.163,0,-92.4624	0/0:29:28,1:28:991:1:36:0,-5.13159,-85.3464	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.3623	0/0:57:56,1:56:1995:1:36:0,-13.5919,-173.717	0/0:90:90,0:90:3186:0:0:0,-27.0927,-283.441	0/1:78:45,33:45:1599:33:1188:-76.2038,0,-118.739	0/0:43:43,0:43:1531:0:0:0,-12.9443,-136.966	0/0:151:151,0:151:5350:0:0:0,-45.4555,-478.889	0/1:149:80,69:80:2856:69:2459:-161.755,0,-208.673	0/1:147:69,78:69:2469:78:2777:-190.567,0,-175.545	0/0:168:167,1:167:5911:1:36:0,-46.9748,-523.58	0/0:126:125,1:125:4409:1:36:0,-34.363,-389.962	0/0:109:109,0:109:3848:0:0:0,-32.8123,-341.612	0/1:186:94,92:94:3329:92:3277:-231.081,0,-243.307	0/0:89:89,0:89:3180:0:0:0,-26.7917,-284.495	0/1:86:46,40:46:1652:40:1414:-98.2986,0,-122.546	0/1:86:49,37:49:1752:37:1324:-89.3192,0,-129.252	0/0:82:81,1:81:2891:1:36:0,-21.4383,-254.687	0/1:32:5,27:5:180:27:959:-74.6869,0,-6.861	0/1:38:21,17:21:756:17:612:-42.1174,0,-56.1866	0/1:37:15,22:15:508:22:783:-58.6993,0,-34.738	0/0:45:45,0:45:1603:0:0:0,-13.5463,-141.75	0/1:133:76,57:76:2683:57:2025:-140.091,0,-199.476	0/0:93:93,0:93:3328:0:0:0,-27.9958,-296.713	0/0:55:55,0:55:1951:0:0:0,-16.5566,-174.236	0/0:124:124,0:124:4436:0:0:0,-37.3277,-396.873	0/1:36:17,19:17:612:19:676:-47.1913,0,-44.2774	0/0:51:51,0:51:1805:0:0:0,-15.3525,-160.258	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.1337	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6402	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.55862	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.169	0/1:275:144,131:144:5130:131:4660:-323.936,0,-374.241	0/1:31:21,10:21:743:10:356:-22.569,0,-57.0523	0/0:94:93,1:93:3270:1:36:0,-25.1732,-290.227	0/1:4:2,2:2:72:2:72:-5.29809,0,-5.6326	0/1:71:40,31:40:1427:31:1108:-75.2399,0,-106.155	0/0:71:71,0:71:2527:0:0:0,-21.3731,-226.207	0/0:60:60,0:60:2140:0:0:0,-18.0618,-190.509	0/0:121:121,0:121:4288:0:0:0,-36.4246,-383.764	0/1:84:44,40:44:1527:40:1428:-100.572,0,-111.997	0/1:48:24,24:24:856:24:864:-61.1997,0,-62.2373	0/1:32:15,17:15:531:17:612:-44.3611,0,-38.2447	0/0:51:50,1:50:1747:1:36:0,-11.7543,-152.518	0/1:59:29,30:29:1028:30:1067:-75.1356,0,-74.0111	0/1:74:36,37:36:1283:37:1320:-94.8308,0,-92.2447	0/0:78:78,0:78:2766:0:0:0,-23.4803,-246.453	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59568	0/0:64:64,0:64:2288:0:0:0,-19.2659,-204.589	0/1:31:19,12:19:680:12:428:-29.2096,0,-51.6674	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4697	0/1:59:26,33:26:932:33:1172:-82.3276,0,-65.4499	0/0:18:18,0:18:633:0:0:0,-5.41854,-56.0688	1/1:2:0,2:0:0:2:72:-6.83577,-0.60206,0	0/1:7:4,3:4:144:3:108:-7.9632,0,-11.1773	0/0:52:51,1:51:1819:1:36:0,-12.0553,-159.513	0/1:166:83,83:83:2936:83:2964:-207.931,0,-212.8	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:58:30,28:30:1080:28:1004:-72.1707,0,-79.3148	0/1:71:31,40:31:1100:40:1440:-101.72,0,-77.4982	0/1:50:27,23:27:951:23:807:-54.6176,0,-70.6094	0/0:34:34,0:34:1198:0:0:0,-10.235,-107.569	0/1:82:45,37:45:1608:37:1315:-90.1488,0,-119.069	0/1:80:21,59:21:752:59:2108:-156.418,0,-43.2612	0/1:83:38,45:38:1345:45:1595:-113.326,0,-94.8518	0/0:40:40,0:40:1427:0:0:0,-12.0412,-127.718	0/1:163:81,82:81:2871:82:2927:-210.904,0,-207.8	0/1:17:12,5:12:432:5:180:-10.9706,0,-33.31	0/0:28:28,0:28:984:0:0:0,-8.42884,-87.6992	0/1:46:31,15:31:1089:15:540:-31.9449,0,-83.4969	0/1:46:20,26:20:707:26:928:-67.2576,0,-49.4891	0/0:66:66,0:66:2360:0:0:0,-19.868,-211.099	0/0:84:84,0:84:2981:0:0:0,-25.2865,-267.605	0/1:59:29,30:29:1025:30:1072:-74.5133,0,-74.3492	0/1:7:4,3:4:140:3:104:-6.30343,0,-10.7799	0/1:71:37,34:37:1303:34:1212:-83.3896,0,-95.7686	0/0:66:66,0:66:2351:0:0:0,-19.868,-210.273	0/0:111:111,0:111:3940:0:0:0,-33.4143,-351.681	0/1:125:65,60:65:2320:60:2148:-151.545,0,-170.064	0/0:127:126,1:126:4463:1:36:0,-35.1763,-395.21	0/0:121:121,0:121:4271:0:0:0,-36.4246,-383.16	0/1:187:92,95:92:3251:95:3403:-238.03,0,-233.164	0/0:58:58,0:58:2071:0:0:0,-17.4597,-184.967	0/1:123:65,58:65:2303:58:2068:-137.627,0,-169.186	0/0:113:113,0:113:3992:0:0:0,-34.0164,-355.238	0/0:94:94,0:94:3323:0:0:0,-28.2968,-297.123	0/1:201:105,96:105:3729:96:3444:-239.739,0,-273.465	0/1:101:35,66:35:1256:66:2368:-174.139,0,-82.1874	0/0:51:51,0:51:1813:0:0:0,-15.3525,-161.129	0/0:198:197,1:197:6985:1:36:0,-56.2578,-616.591
chr11	1711009	.	C	T	66398.7	PASS	AB=0.512604;ABP=13.6295;AC=48;AF=0.255319;AN=188;AO=3960;CIGAR=1X;DP=14863;DPB=14863;DPRA=1.53778;EPP=8593.36;EPPR=23676.4;GTI=0;LEN=1;MEANALT=1;MQM=59.9942;MQMR=59.9982;NS=94;NUMALT=1;ODDS=8.41483;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140317;QR=388954;RO=10902;RPL=1;RPP=8593.36;RPPR=23676.4;RPR=3959;RUN=1;SAF=0;SAP=8602.04;SAR=3960;SRF=0;SRP=23676.4;SRR=10902;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:131:131,0:131:4636:0:0:0,-39.4349,-417.404	0/1:83:38,45:38:1368:45:1572:-116.781,0,-98.4353	0/0:296:295,1:295:10506:1:36:0,-85.5066,-941.86	0/1:282:139,143:139:4979:143:5041:-368.946,0,-363.367	0/0:125:124,1:124:4416:1:32:0,-34.4294,-394.413	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:182:182,0:182:6513:0:0:0,-54.7875,-586.252	0/0:216:215,0:215:7672:0:0:0,-64.7214,-690.156	0/1:171:92,79:92:3308:79:2820:-202.564,0,-246.461	0/0:164:164,0:164:5858:0:0:0,-49.3689,-527.329	0/0:118:118,0:118:4195:0:0:0,-35.5215,-377.734	0/1:152:80,72:80:2844:72:2580:-186.693,0,-210.443	0/1:114:55,59:55:1972:59:2072:-152.431,0,-143.437	0/0:119:119,0:119:4244:0:0:0,-35.8226,-382.141	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.674	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.332	0/1:55:18,37:18:644:37:1324:-102.905,0,-41.7339	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/1:67:40,27:40:1421:27:956:-66.1867,0,-108.016	0/1:341:147,194:147:5241:194:6880:-516.618,0,-369.177	0/0:312:310,2:310:11021:2:72:0,-87.0846,-984.95	0/1:256:104,152:104:3728:152:5297:-399.8,0,-258.657	0/1:221:108,113:108:3850:113:4014:-294.921,0,-280.166	0/1:129:63,66:63:2260:66:2335:-171.575,0,-164.7	0/0:196:196,0:196:7025:0:0:0,-59.0019,-632.309	0/1:440:220,220:220:7892:220:7760:-565.977,0,-577.85	0/0:573:572,1:572:20365:1:36:0,-168.892,-1828.76	0/0:41:41,0:41:1456:0:0:0,-12.3422,-131.336	0/0:362:361,1:361:12911:1:36:0,-105.375,-1158.2	0/1:218:122,96:122:4376:96:3424:-242.75,0,-328.388	0/0:205:205,0:205:7333:0:0:0,-61.7111,-660.018	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:13:13,0:13:445:0:0:0,-3.91339,-40.3754	0/0:28:28,0:28:981:0:0:0,-8.42884,-88.601	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:265:132,133:132:4705:133:4716:-344.83,0,-343.837	0/1:219:121,98:121:4320:98:3474:-246.945,0,-323.052	0/0:94:94,0:94:3350:0:0:0,-28.2968,-301.717	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:176:93,83:93:3291:83:2881:-206.542,0,-243.428	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:281:281,0:281:10009:0:0:0,-84.5894,-900.75	0/0:101:101,0:101:3598:0:0:0,-30.404,-324.027	0/1:81:41,40:41:1460:40:1388:-100.831,0,-107.313	0/1:236:143,93:143:5085:93:3317:-227.704,0,-386.75	0/1:184:78,106:78:2783:106:3797:-286.536,0,-195.321	0/0:194:190,4:190:6782:4:144:0,-45.0862,-597.138	0/1:225:121,104:121:4301:104:3700:-265.471,0,-319.534	0/1:250:103,147:103:3677:147:5246:-397.018,0,-255.875	0/0:244:244,0:244:8705:0:0:0,-73.4513,-783.441	0/1:39:11,28:11:396:28:993:-77.9423,0,-24.2426	0/0:282:281,1:281:10033:1:32:0,-81.6911,-899.706	0/1:144:77,67:77:2738:67:2351:-168.497,0,-203.314	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/1:228:114,114:114:4054:114:4077:-298.48,0,-296.411	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:27:9,18:9:324:18:648:-50.5241,0,-21.378	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/0:365:363,2:363:12945:2:57:0,-104.463,-1159.45	0/1:158:79,79:79:2819:79:2779:-202.787,0,-206.386	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	0/1:165:74,91:74:2660:91:3245:-242.6,0,-189.975	0/1:349:169,180:169:6028:180:6376:-468.871,0,-437.565	0/1:94:46,48:46:1644:48:1701:-125.077,0,-119.952	0/0:123:123,0:123:4361:0:0:0,-37.0267,-392.667	0/1:283:131,152:131:4674:152:5384:-399.5,0,-335.628	0/1:295:107,188:107:3809:188:6653:-510.047,0,-254.204	0/1:96:49,47:49:1752:47:1651:-119.977,0,-129.065	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.223	0/1:77:37,40:37:1328:40:1428:-105.638,0,-96.6429	0/1:42:29,13:29:1044:13:453:-28.4564,0,-81.6315	0/0:210:210,0:210:7484:0:0:0,-63.2163,-673.605	0/1:132:64,68:64:2279:68:2434:-179.578,0,-165.636	0/1:322:132,190:132:4717:190:6769:-512.354,0,-327.757	0/0:212:212,0:212:7588:0:0:0,-63.8184,-682.956	0/0:210:210,0:210:7485:0:0:0,-63.2163,-673.693	0/1:100:51,49:51:1828:49:1737:-126.51,0,-134.698	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/1:188:99,89:99:3517:89:3162:-228.209,0,-260.144	0/0:137:137,0:137:4901:0:0:0,-41.2411,-441.24	0/0:244:243,1:243:8646:1:36:0,-69.853,-774.537	0/1:73:47,26:47:1688:26:920:-61.1419,0,-130.232	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.662	0/1:180:85,95:85:2992:95:3363:-248.701,0,-215.328	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/1:88:53,35:53:1900:35:1232:-84.6931,0,-144.787	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/0:113:113,0:113:4044:0:0:0,-34.0164,-364.148	0/1:230:130,100:130:4626:100:3557:-251.101,0,-347.268	0/1:117:41,76:41:1460:76:2677:-205.955,0,-96.4755	0/0:186:186,0:186:6574:0:0:0,-55.9916,-591.744	0/0:140:139,1:139:4975:1:36:0,-38.5459,-444.3
chr11	1773244	.	G	A	74392.3	PASS	AB=0.490147;ABP=5.36383;AC=143;AF=0.760638;AN=188;AO=3548;CIGAR=1X;DP=4974;DPB=4974;DPRA=0;EPP=7483.22;EPPR=3056.25;GTI=2;LEN=1;MEANALT=1;MQM=59.8205;MQMR=59.9663;NS=94;NUMALT=1;ODDS=0.160209;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126796;QR=50934;RO=1426;RPL=24;RPP=7500.34;RPPR=3056.25;RPR=3524;RUN=1;SAF=3546;SAP=7690.03;SAR=2;SRF=1426;SRP=3099.53;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:45:23,22:23:824:22:792:-58.0593,0,-60.937	0/1:114:53,61:53:1883:61:2184:-162.495,0,-135.431	0/1:96:47,49:47:1679:49:1745:-128.405,0,-122.498	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:27:0,27:0:0:27:972:-87.7841,-8.12781,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:55:0,55:0:0:55:1968:-177.365,-16.5567,0	0/1:112:58,54:58:2076:54:1933:-140.509,0,-153.395	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:80:44,36:44:1576:36:1281:-91.5089,0,-118.049	0/1:52:25,27:25:891:27:960:-71.0627,0,-64.8552	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:62:0,62:0:0:62:2216:-199.704,-18.6639,0	1/1:57:0,57:0:0:57:2048:-184.588,-17.1587,0	0/1:23:10,13:10:360:13:464:-35.1738,0,-25.8206	1/1:26:0,26:0:0:26:932:-84.0263,-7.82678,0	0/1:27:14,13:14:504:13:460:-33.6076,0,-37.5703	0/1:46:18,28:18:648:28:1004:-76.8285,0,-44.8045	1/1:83:0,83:0:0:83:2951:-265.816,-24.9855,0	0/1:52:38,14:38:1360:14:489:-28.6853,0,-107.047	0/1:68:33,35:33:1184:35:1256:-92.8752,0,-86.3983	0/1:55:25,30:25:887:30:1080:-80.9566,0,-63.5915	1/1:64:0,64:0:0:64:2284:-204.885,-19.2659,0	0/1:143:71,72:71:2540:72:2561:-187.692,0,-185.804	1/1:131:0,131:0:0:131:4683:-421.631,-39.4349,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:105:0,105:0:0:105:3748:-337.52,-31.6082,0	0/1:53:33,20:33:1180:20:716:-48.8085,0,-90.5535	1/1:81:1,80:1:36:80:2851:-253.23,-20.7852,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:13:0,13:0:0:13:468:-42.4514,-3.91339,0	1/1:13:0,13:0:0:13:468:-42.4419,-3.91339,0	1/1:15:0,15:0:0:15:540:-48.8951,-4.51545,0	1/1:9:0,9:0:0:9:324:-29.4504,-2.70927,0	0/1:142:72,70:72:2580:70:2508:-183.226,0,-189.646	0/1:74:38,36:38:1364:36:1292:-94.3075,0,-100.784	1/1:24:0,24:0:0:24:851:-76.8957,-7.22472,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:42:30,12:30:1072:12:432:-26.5779,0,-84.1492	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	1/1:45:0,45:0:0:45:1583:-142.757,-13.5464,0	0/1:34:15,19:15:525:19:684:-51.6415,0,-37.343	0/1:94:38,56:38:1355:56:1996:-151.617,0,-93.9529	0/1:37:21,16:21:752:16:568:-40.3138,0,-56.8681	1/1:71:0,71:0:0:71:2548:-229.329,-21.3731,0	0/1:43:18,25:18:648:25:900:-68.3767,0,-45.7076	0/1:43:27,16:27:972:16:576:-39.2169,0,-74.8252	1/1:28:0,28:0:0:28:1000:-90.3145,-8.42884,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:68:0,68:0:0:68:2424:-218.382,-20.47,0	0/1:38:17,21:17:604:21:736:-55.1211,0,-43.2515	1/1:25:0,25:0:0:25:892:-80.5077,-7.52575,0	0/1:67:40,27:40:1427:27:968:-67.2674,0,-108.558	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:9:4,5:4:136:5:180:-13.8428,0,-9.86627	1/1:82:0,82:0:0:82:2925:-263.485,-24.6845,0	0/1:84:44,40:44:1576:40:1436:-104.251,0,-116.845	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:98:50,48:50:1762:48:1720:-125.561,0,-129.359	0/1:84:36,48:36:1292:48:1704:-128.355,0,-91.2972	0/1:63:24,39:24:860:39:1400:-107.334,0,-58.7569	1/1:31:0,31:0:0:31:1108:-100.003,-9.33193,0	0/1:65:33,32:33:1179:32:1140:-82.9689,0,-86.8503	0/1:53:33,20:33:1175:20:720:-49.1742,0,-90.1024	0/1:20:12,8:12:428:8:288:-20.2459,0,-32.8382	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	0/1:59:32,27:32:1144:27:972:-70.0371,0,-85.5087	0/1:25:13,12:13:464:12:432:-31.6954,0,-34.5266	1/1:103:0,103:0:0:103:3680:-331.386,-31.0061,0	0/1:67:33,34:33:1180:34:1224:-90.298,0,-86.339	0/1:113:58,55:58:2046:55:1962:-142.829,0,-150.394	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:48:1,47:1:36:47:1676:-147.523,-10.8512,0	0/1:46:22,24:22:788:24:864:-64.2352,0,-57.3974	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	0/1:30:7,23:7:252:23:820:-65.0834,0,-13.9981	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:153:0,153:0:0:153:5465:-491.977,-46.0576,0	0/1:53:27,26:27:968:26:928:-67.8837,0,-71.4828	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	1/1:36:0,36:0:0:36:1288:-115.952,-10.8371,0	0/1:117:61,56:61:2173:56:2000:-145.053,0,-160.614	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:49:28,21:28:1008:21:748:-52.8915,0,-76.2859	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:107:52,55:52:1868:55:1968:-145.181,0,-136.189	0/1:47:33,14:33:1172:14:496:-30.8259,0,-91.6391	1/1:34:0,34:0:0:34:1205:-108.74,-10.235,0	1/1:61:1,60:1:36:60:2144:-189.612,-14.7646,0
chr11	1773413	.	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chr11	1773602	.	A	G	46441.7	PASS	AB=0.489838;ABP=8.17363;AC=40;AF=0.212766;AN=188;AO=2938;CIGAR=1X;DP=20439;DPB=20439;DPRA=1.01741;EPP=6382.8;EPPR=37992.9;GTI=2;LEN=1;MEANALT=1.05085;MQM=59.9486;MQMR=59.9696;NS=94;NUMALT=1;ODDS=3.15046;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105084;QR=626960;RO=17495;RPL=2938;RPP=6382.8;RPPR=37992.9;RPR=0;RUN=1;SAF=0;SAP=6382.8;SAR=2938;SRF=0;SRP=37992.9;SRR=17495;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.891	0/1:93:63,30:63:2260:30:1068:-68.4363,0,-175.667	0/1:106:46,60:46:1656:60:2144:-161.316,0,-117.419	0/1:226:125,100:125:4492:100:3575:-253.866,0,-336.338	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:215:214,1:214:7657:1:36:0,-61.1232,-685.564	0/1:165:74,90:74:2645:90:3202:-238.663,0,-188.566	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:424:424,0:424:15213:0:0:0,-127.637,-1368.88	0/1:107:51,56:51:1832:56:2012:-149.143,0,-132.951	0/1:70:18,52:18:644:52:1864:-146.967,0,-37.2103	0/0:102:102,0:102:3645:0:0:0,-30.7051,-328.253	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/1:52:26,26:26:936:26:936:-68.9059,0,-68.9059	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:66:53,13:53:1892:13:468:-22.5917,0,-150.69	0/1:223:127,96:127:4525:96:3436:-242.324,0,-340.271	0/0:180:180,0:180:6452:0:0:0,-54.1854,-580.765	0/1:128:37,91:37:1328:91:3236:-252.932,0,-81.2904	0/1:263:132,130:132:4736:130:4663:-340.636,0,-347.207	0/1:36:23,13:23:824:13:464:-31.2604,0,-63.6462	0/0:114:113,0:113:4052:0:0:0,-34.0164,-364.016	0/1:261:124,137:124:4452:137:4887:-360.478,0,-322.278	0/0:242:241,1:241:8620:1:36:0,-69.251,-772.195	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:256:252,4:252:9013:4:144:0,-63.7501,-797.834	0/1:177:84,93:84:2986:93:3329:-246.544,0,-215.687	0/0:256:256,0:256:9158:0:0:0,-77.0637,-824.183	0/0:418:410,8:410:14731:8:288:0,-99.5631,-1299.23	0/0:992:989,3:989:35451:3:108:0,-288.547,-3179.13	0/0:1045:1042,3:1042:37321:3:108:0,-304.501,-3347.59	0/0:1876:1876,0:1876:67152:0:0:0,-564.732,-6040.77	0/0:1002:1002,0:1002:35974:0:0:0,-301.632,-3236.42	0/1:168:79,89:79:2835:89:3179:-235.761,0,-204.814	0/1:144:75,69:75:2677:69:2476:-179.728,0,-197.825	0/0:334:334,0:334:11988:0:0:0,-100.544,-1078.76	0/0:328:327,1:327:11686:1:36:0,-95.171,-1048.04	0/1:173:112,61:112:4001:61:2188:-145.107,0,-308.2	0/0:172:172,0:172:6168:0:0:0,-51.7772,-555.203	0/0:236:236,0:236:8424:0:0:0,-71.0431,-758.162	0/0:57:55,2:55:1955:2:72:0,-10.322,-169.388	0/1:46:14,32:14:500:32:1140:-89.0613,0,-31.4888	0/1:154:58,96:58:2061:96:3440:-262.753,0,-139.401	0/1:121:61,60:61:2181:60:2131:-155.633,0,-160.13	0/0:195:190,5:190:6804:5:176:0,-42.5158,-596.244	0/1:86:51,35:51:1832:35:1256:-87.4567,0,-139.272	0/1:128:63,65:63:2260:65:2336:-171.963,0,-165.131	0/0:122:121,0:121:4348:0:0:0,-36.4246,-391.132	0/0:502:494,8:494:17723:8:288:0,-124.85,-1568.41	0/0:129:129,0:129:4636:0:0:0,-38.8329,-417.401	0/1:69:46,23:46:1637:23:816:-52.9888,0,-126.837	0/0:702:701,0:701:25148:0:0:0,-211.022,-2262.25	0/1:116:50,66:50:1800:66:2348:-176.657,0,-127.363	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:513:505,8:505:18120:8:288:0,-128.161,-1604.11	0/0:461:455,6:455:16320:6:216:0,-118.984,-1448.68	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/1:117:56,61:56:2004:61:2196:-162.682,0,-145.413	0/0:344:341,3:341:12225:3:108:0,-93.4791,-1090.01	0/1:136:20,116:20:720:116:4160:-333.642,0,-24.1887	0/1:214:96,118:96:3448:118:4240:-317.357,0,-246.111	0/1:76:34,42:34:1220:42:1508:-113.136,0,-87.2285	0/0:83:82,1:82:2940:1:36:0,-21.3872,-261.236	0/1:231:113,118:113:4024:118:4223:-310.713,0,-292.81	0/1:150:43,107:43:1540:107:3819:-298.752,0,-93.7386	0/0:314:296,18:296:10605:18:646:0,-36.0521,-895.87	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:31:14,17:14:500:17:607:-45.627,0,-36.0042	0/0:430:404,26:404:14484:26:936:0,-44.8834,-1218.25	0/0:170:168,2:168:6007:2:68:0,-44.7174,-534.274	0/1:115:50,65:50:1796:65:2333:-175.611,0,-127.304	0/1:395:190,205:190:6782:205:7304:-538.505,0,-491.526	0/0:156:156,0:156:5604:0:0:0,-46.9607,-504.48	0/0:163:163,0:163:5836:0:0:0,-49.0679,-525.352	0/1:97:49,48:49:1756:48:1720:-125.886,0,-129.124	0/0:476:459,17:459:16460:17:612:0,-87.8768,-1425.64	0/1:115:50,65:50:1800:65:2327:-175.071,0,-127.664	0/0:113:112,1:112:4012:1:36:0,-30.4181,-357.652	0/0:242:242,0:242:8653:0:0:0,-72.8493,-777.654	0/1:49:19,30:19:684:30:1064:-81.3212,0,-47.1399	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:125:58,67:58:2084:67:2388:-177.549,0,-150.201	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:63:27,36:27:968:36:1292:-97.6189,0,-68.4701	0/0:77:77,0:77:2763:0:0:0,-23.1793,-248.91	0/0:339:339,0:339:12171:0:0:0,-102.049,-1095.13	0/1:526:475,51:475:17045:51:1803:-4.20882,0,-1375.34	0/1:139:48,91:48:1724:91:3268:-252.496,0,-113.602	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568
chr11	1777485	.	A	C	79389.2	PASS	AB=0.495004;ABP=4.55096;AC=49;AF=0.263441;AN=186;AO=3525;CIGAR=1X;DP=13515;DPB=13515;DPRA=1.09709;EPP=7657.45;EPPR=21687.3;GTI=1;LEN=1;MEANALT=1.03922;MQM=58.4414;MQMR=59.8457;NS=93;NUMALT=1;ODDS=2.51888;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124819;QR=352672;RO=9986;RPL=1909;RPP=55.895;RPPR=124.026;RPR=1616;RUN=1;SAF=1909;SAP=55.895;SAR=1616;SRF=5366;SRP=124.026;SRR=4620;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:93:93,0:93:3294:0:0:0,-27.9958,-296.233	0/1:156:86,69:86:3039:69:2445:-173.026,0,-226.713	0/1:161:82,79:82:2898:79:2769:-200.64,0,-212.587	0/1:296:149,147:149:5282:147:5229:-381.197,0,-386.416	0/0:150:150,0:150:5293:0:0:0,-45.1545,-476.508	0/0:105:105,0:105:3719:0:0:0,-31.6081,-334.878	0/0:156:155,1:155:5472:1:36:0,-43.3624,-488.974	0/0:280:279,0:279:9799:0:0:0,-83.9874,-881.151	0/1:154:76,78:76:2679:78:2766:-202.671,0,-194.987	0/0:143:143,0:143:5067:0:0:0,-43.0473,-456.18	0/0:70:70,0:70:2483:0:0:0,-21.0721,-223.723	0/1:141:66,75:66:2355:75:2656:-196.642,0,-169.759	0/1:125:59,66:59:2090:66:2301:-169.526,0,-150.731	0/0:101:101,0:101:3509:0:0:0,-30.404,-315.703	0/0:142:142,0:142:5063:0:0:0,-42.7463,-455.753	0/0:98:98,0:98:3479:0:0:0,-29.5009,-311.74	0/1:111:53,58:53:1880:58:2029:-148.629,0,-136.05	0/0:92:92,0:92:3222:0:0:0,-27.6948,-290.171	0/1:85:44,41:44:1542:41:1443:-104.479,0,-113.48	0/1:185:100,85:100:3525:85:3012:-215.551,0,-261.772	0/0:285:285,0:285:10131:0:0:0,-85.7935,-911.711	0/1:68:21,47:21:748:47:1672:-129.602,0,-47.1753	0/1:145:83,62:83:2923:62:2215:-155.73,0,-219.658	0/1:139:71,68:71:2476:68:2422:-176.258,0,-181.25	0/0:198:198,0:198:6963:0:0:0,-59.6039,-625.325	0/1:384:200,184:200:7039:184:6515:-470.588,0,-517.99	0/0:399:399,0:399:14094:0:0:0,-120.111,-1268.24	0/0:83:83,0:83:2906:0:0:0,-24.9855,-261.772	0/0:325:325,0:325:11488:0:0:0,-97.8347,-1033.81	0/1:157:71,86:71:2512:86:3056:-227.589,0,-179.027	0/0:184:184,0:184:6489:0:0:0,-55.3895,-584.087	0/1:2:1,1:1:36:1:36:-2.9945,0,-2.99621	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:361:174,187:174:6141:187:6572:-482.675,0,-444.123	0/1:157:88,69:88:3096:69:2457:-173.91,0,-231.599	0/0:94:94,0:94:3275:0:0:0,-28.2968,-294.961	.:.:.:.:.:.:.:.	0/1:204:102,102:102:3589:102:3604:-262.828,0,-261.727	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.659	0/0:240:240,0:240:8516:0:0:0,-72.2472,-766.442	0/0:142:142,0:142:5037:0:0:0,-42.7463,-453.41	0/1:114:56,58:56:1962:58:2075:-152.652,0,-142.534	0/1:133:75,58:75:2651:58:2076:-147.009,0,-198.801	0/1:183:97,86:97:3449:86:3036:-218.175,0,-255.531	0/0:227:226,1:226:8023:1:36:0,-64.7355,-718.084	0/1:137:75,61:75:2671:61:2179:-154.669,0,-199.336	0/1:184:96,88:96:3398:88:3113:-224.871,0,-250.643	0/0:118:118,0:118:4159:0:0:0,-35.5215,-374.482	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:130:130,0:130:4631:0:0:0,-39.1339,-416.901	0/1:42:24,18:24:843:18:644:-45.6473,0,-63.5447	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:175:101,74:101:3576:74:2588:-180.352,0,-269.369	0/0:86:86,0:86:3030:0:0:0,-25.8886,-272.933	0/1:6:5,1:5:180:1:36:-1.71483,0,-14.7459	0/1:14:6,8:6:216:8:275:-20.8691,0,-15.5761	0/0:152:152,0:152:5333:0:0:0,-45.7566,-479.835	0/1:162:84,78:84:2966:78:2769:-200.583,0,-218.408	1/1:5:0,5:0:0:5:180:-16.5505,-1.50515,0	0/1:261:135,126:135:4757:126:4483:-324.038,0,-349.722	0/1:235:117,118:117:4140:118:4186:-306.156,0,-302.02	0/1:98:62,36:62:2196:36:1296:-87.403,0,-168.069	0/0:124:124,0:124:4353:0:0:0,-37.3277,-391.949	0/1:238:114,124:114:4052:124:4380:-322.599,0,-293.165	0/1:184:63,121:63:2228:121:4302:-331.894,0,-145.347	0/1:53:26,27:26:923:27:941:-69.0283,0,-67.3623	0/0:113:113,0:113:3958:0:0:0,-34.0164,-356.366	0/1:151:86,65:86:3034:65:2318:-163.385,0,-227.833	0/1:35:21,14:21:740:14:504:-35.162,0,-56.3873	0/0:177:177,0:177:6229:0:0:0,-53.2823,-560.624	0/1:171:99,72:99:3508:72:2575:-180.088,0,-264.443	0/1:320:167,153:167:5900:153:5439:-392.942,0,-434.788	0/0:186:186,0:186:6598:0:0:0,-55.9916,-593.901	0/0:227:226,1:226:7998:1:36:0,-64.7392,-716.073	0/1:216:104,112:104:3660:112:3954:-290.248,0,-264.577	0/1:11:7,4:7:244:4:144:-9.99543,0,-18.9881	0/1:165:77,88:77:2705:88:3109:-230.208,0,-194.025	0/0:134:134,0:134:4718:0:0:0,-40.338,-424.763	0/0:292:292,0:292:10344:0:0:0,-87.9008,-930.852	0/1:149:63,86:63:2241:86:3034:-228.317,0,-157.085	0/0:110:110,0:110:3894:0:0:0,-33.1133,-350.657	0/0:149:149,0:149:5239:0:0:0,-44.8535,-471.656	0/1:250:125,125:125:4414:125:4384:-319.36,0,-322.175	0/0:61:61,0:61:2167:0:0:0,-18.3628,-195.293	0/1:114:57,57:57:1994:57:1977:-143.786,0,-145.167	0/0:127:127,0:127:4458:0:0:0,-38.2308,-401.324	0/0:56:56,0:56:1954:0:0:0,-16.8577,-176.132	0/1:138:78,60:78:2725:60:2131:-149.596,0,-203.95	0/1:131:38,93:38:1352:93:3312:-258.664,0,-82.5435	0/0:253:252,0:252:8907:0:0:0,-75.8596,-801.191	0/0:216:216,0:216:7622:0:0:0,-65.0225,-686.026
chr11	1777583	.	A	G	171942	PASS	AB=0.461824;ABP=71.3191;AC=142;AF=0.755319;AN=188;AO=6575;CIGAR=1X;DP=9490;DPB=9490;DPRA=0;EPP=14280.4;EPPR=6324.17;GTI=6;LEN=1;MEANALT=1;MQM=59.9533;MQMR=59.9997;NS=94;NUMALT=1;ODDS=0.671132;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232559;QR=104073;RO=2915;RPL=2975;RPP=132.019;RPPR=4.26253;RPR=3600;RUN=1;SAF=2975;SAP=132.019;SAR=3600;SRF=1477;SRP=4.14334;SRR=1438;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:67:33,34:33:1184:34:1220:-89.9378,0,-86.6993	0/1:109:50,59:50:1796:59:2048:-151.774,0,-129.11	0/1:199:104,95:104:3720:95:3373:-243.88,0,-275.097	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:155:0,155:0:0:155:5473:-492.7,-46.6597,0	1/1:89:0,89:0:0:89:3121:-281.113,-26.7917,0	0/1:98:59,39:59:2108:39:1371:-93.9952,0,-160.488	1/1:146:0,146:0:0:146:5184:-466.7,-43.9504,0	1/1:127:0,127:0:0:127:4461:-401.664,-38.2308,0	0/1:162:82,80:82:2915:80:2817:-205.002,0,-213.819	0/1:129:53,76:53:1900:76:2692:-203.69,0,-132.445	1/1:121:0,121:0:0:121:4242:-381.962,-36.4246,0	1/1:112:0,112:0:0:112:3983:-358.633,-33.7154,0	1/1:96:0,96:0:0:96:3427:-308.644,-28.8989,0	0/1:84:49,35:49:1737:35:1233:-85.9853,0,-131.326	1/1:53:0,53:0:0:53:1861:-167.765,-15.9546,0	0/1:45:28,17:28:995:17:597:-40.5106,0,-76.3177	0/1:98:56,42:56:2004:42:1470:-103.09,0,-151.133	1/1:185:1,184:1:36:184:6514:-582.744,-52.0923,0	0/1:55:45,10:45:1616:10:360:-16.1877,0,-129.173	0/1:64:31,33:31:1099:33:1143:-83.9061,0,-79.9535	0/1:49:16,33:16:568:33:1169:-90.7648,0,-36.7014	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	0/1:220:128,92:128:4596:92:3270:-228.294,0,-347.576	1/1:180:0,180:0:0:180:6401:-576.183,-54.1854,0	1/1:64:0,64:0:0:64:2270:-204.562,-19.2659,0	1/1:244:0,244:0:0:244:8615:-775.354,-73.4513,0	0/1:86:48,38:48:1695:38:1359:-96.7212,0,-126.947	1/1:84:0,84:0:0:84:3000:-270.23,-25.2865,0	0/1:6:5,1:5:171:1:32:-1.39313,0,-13.9193	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:8:0,8:0:0:8:275:-25.0835,-2.40824,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:333:174,159:174:6201:159:5634:-406.931,0,-457.946	0/1:73:36,37:36:1292:37:1332:-98.2072,0,-94.6086	1/1:98:0,98:0:0:98:3427:-308.637,-29.5009,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:107:53,54:53:1870:54:1931:-141.856,0,-136.368	1/1:62:0,62:0:0:62:2179:-196.34,-18.6639,0	1/1:80:1,79:1:36:79:2786:-247.37,-20.4841,0	1/1:99:0,99:0:0:99:3472:-312.645,-29.802,0	0/1:117:69,48:69:2460:48:1715:-119.414,0,-186.434	0/1:56:33,23:33:1184:23:811:-56.4523,0,-90.0106	0/1:49:25,24:25:896:24:855:-62.5197,0,-66.2099	1/1:122:5,117:5:180:117:4105:-353.084,-20.1736,0	0/1:65:38,27:38:1364:27:964:-67.4874,0,-103.494	0/1:153:79,74:79:2799:74:2593:-187.56,0,-206.091	1/1:81:0,81:0:0:81:2853:-257.006,-24.3834,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:76:0,76:0:0:76:2675:-240.995,-22.8783,0	0/1:68:37,31:37:1328:31:1110:-79.7412,0,-99.3522	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	0/1:142:78,64:78:2783:64:2277:-162.444,0,-207.964	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:14:10,4:10:356:4:140:-8.73016,0,-28.1668	1/1:87:0,87:0:0:87:3085:-277.878,-26.1896,0	0/1:186:93,93:93:3331:93:3286:-239.97,0,-244.015	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:428:237,191:237:8466:191:6759:-479.547,0,-633.102	0/1:112:52,60:52:1872:60:2123:-157.623,0,-135.044	0/1:90:55,35:55:1955:35:1224:-83.3697,0,-149.132	1/1:69:0,69:0:0:69:2435:-219.402,-20.7711,0	0/1:119:71,48:71:2532:48:1707:-118.093,0,-192.309	0/1:146:94,52:94:3360:52:1851:-122.919,0,-258.667	0/1:76:36,40:36:1296:40:1419:-105.128,0,-94.0657	1/1:46:0,46:0:0:46:1626:-146.627,-13.8474,0	0/1:75:41,34:41:1463:34:1201:-85.8173,0,-109.388	0/1:44:17,27:17:612:27:945:-72.1168,0,-42.1681	1/1:71:0,71:0:0:71:2514:-226.511,-21.3731,0	0/1:188:106,82:106:3792:82:2917:-206.171,0,-284.885	0/1:95:57,38:57:2048:38:1330:-91.4004,0,-155.994	1/1:292:0,292:0:0:292:10360:-932.326,-87.9008,0	1/1:34:0,34:0:0:34:1204:-108.666,-10.235,0	0/1:308:167,141:167:5972:141:4995:-356.983,0,-444.87	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:120:64,56:64:2282:56:1962:-140.728,0,-169.517	1/1:55:0,55:0:0:55:1956:-176.316,-16.5567,0	1/1:169:0,169:0:0:169:5991:-539.297,-50.8741,0	0/1:102:47,55:47:1684:55:1944:-144.529,0,-121.142	1/1:112:0,112:0:0:112:3941:-354.887,-33.7154,0	1/1:89:0,89:0:0:89:3132:-282.05,-26.7917,0	0/1:231:115,116:115:4095:116:4089:-298.63,0,-299.199	1/1:31:0,31:0:0:31:1087:-98.1365,-9.33193,0	0/1:129:74,55:74:2636:55:1959:-137.751,0,-198.655	1/1:105:0,105:0:0:105:3718:-334.821,-31.6082,0	1/1:46:1,45:1:36:45:1577:-138.62,-10.2491,0	0/1:177:85,92:85:3009:92:3262:-240.519,0,-217.759	0/1:107:70,37:70:2491:37:1328:-87.612,0,-192.233	1/1:266:0,266:0:0:266:9433:-848.941,-80.074,0	1/1:215:3,212:3:108:212:7515:-666.32,-54.6463,0
chr11	1777663	.	A	G	22118.8	PASS	AB=0.513132;ABP=6.83144;AC=48;AF=0.255319;AN=188;AO=1317;CIGAR=1X;DP=4544;DPB=4544;DPRA=1.2803;EPP=2845.49;EPPR=6921.59;GTI=2;LEN=1;MEANALT=1.02;MQM=59.9355;MQMR=59.9873;NS=94;NUMALT=1;ODDS=0.0142258;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46988;QR=115469;RO=3226;RPL=2;RPP=2845.49;RPPR=6921.59;RPR=1315;RUN=1;SAF=1317;SAP=2862.84;SAR=0;SRF=3226;SRP=7008.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:35:14,21:14:504:21:752:-57.4702,0,-35.162	0/1:130:55,75:55:1957:75:2657:-200.216,0,-137.2	0/1:84:37,47:37:1309:47:1668:-125.119,0,-92.823	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:64:37,27:37:1332:27:964:-67.8109,0,-100.916	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:64:24,40:24:864:40:1440:-110.632,0,-58.8166	0/1:49:23,26:23:824:26:913:-67.7343,0,-59.7328	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:36:36,0:36:1266:0:0:0,-10.8371,-114.239	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:18:3,15:3:108:15:540:-43.5171,0,-4.65663	0/1:43:20,23:20:720:23:824:-61.5299,0,-52.1845	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/1:84:27,57:27:972:57:2048:-159.305,0,-62.5114	0/1:67:33,34:33:1154:34:1212:-89.2163,0,-83.9932	0/1:47:39,8:39:1385:8:284:-11.7549,0,-110.798	0/0:65:65,0:65:2325:0:0:0,-19.5669,-209.508	0/1:154:67,87:67:2369:87:3124:-235.026,0,-167.109	0/0:93:93,0:93:3348:0:0:0,-27.9958,-301.531	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:108:108,0:108:3850:0:0:0,-32.5112,-346.694	0/1:59:16,43:16:572:43:1533:-120.5,0,-34.0527	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.977	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:131:67,64:67:2408:64:2296:-167.466,0,-177.541	0/1:84:46,38:46:1652:38:1364:-97.7742,0,-123.682	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:78:40,38:40:1432:38:1364:-99.5804,0,-105.693	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:104:104,0:104:3709:0:0:0,-31.3071,-334.011	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:20:8,12:8:288:12:428:-32.8382,0,-20.2468	0/1:60:40,20:40:1432:20:711:-46.0253,0,-111.116	0/1:56:26,30:26:936:30:1050:-77.9495,0,-67.7018	0/0:68:66,1:66:2349:1:36:0,-16.8556,-208.142	0/1:45:24,21:24:860:21:733:-52.7429,0,-64.1755	0/1:38:23,15:23:828:15:540:-37.4974,0,-63.405	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:30:20,10:20:686:10:360:-23.7134,0,-53.0248	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:65:25,40:25:900:40:1413:-107.898,0,-61.7541	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:63:35,28:35:1256:28:1008:-72.0529,0,-94.3804	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:63:35,28:35:1260:28:989:-70.3571,0,-94.7406	0/1:104:58,46:58:2088:46:1640:-116.582,0,-156.883	0/1:44:19,25:19:676:25:885:-66.7212,0,-47.9227	0/0:18:17,1:17:612:1:36:0,-1.82026,-51.8152	0/1:99:58,41:58:2065:41:1468:-102.614,0,-156.317	0/1:76:21,55:21:756:55:1953:-153.166,0,-45.4889	0/1:26:13,13:13:468:13:464:-34.2707,0,-34.6329	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:31:15,16:15:540:16:576:-42.8421,0,-39.6046	0/1:25:17,8:17:608:8:288:-18.7417,0,-47.5263	0/0:51:50,1:50:1796:1:36:0,-11.7543,-158.324	0/1:59:32,27:32:1148:27:953:-68.3225,0,-85.8691	0/1:79:41,38:41:1461:38:1368:-99.6395,0,-108.003	0/0:34:34,0:34:1171:0:0:0,-10.235,-105.688	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:23:9,14:9:324:14:500:-38.4107,0,-22.5822	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:25:14,11:14:504:11:392:-28.0943,0,-38.1723	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/0:178:178,0:178:6400:0:0:0,-53.5833,-576.083	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:83:43,40:43:1544:40:1428:-103.831,0,-114.268	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:45:22,23:22:792:23:828:-61.2978,0,-58.0593	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:85:44,41:44:1565:41:1438:-104.124,0,-115.552	0/1:36:11,25:11:396:25:900:-70.4839,0,-25.1457	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57
chr11	1779919	.	T	A	39056.5	PASS	AB=0.482949;ABP=15.3771;AC=50;AF=0.268817;AN=186;AO=2377;CIGAR=1X;DP=8598;DPB=8598;DPRA=1.19805;EPP=5164.6;EPPR=13503.1;GTI=1;LEN=1;MEANALT=1.01887;MQM=59.4552;MQMR=57.2783;NS=93;NUMALT=1;ODDS=3.11824;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84620;QR=222575;RO=6217;RPL=0;RPP=5164.6;RPPR=8468.13;RPR=2377;RUN=1;SAF=0;SAP=5164.6;SAR=2377;SRF=647;SRP=8468.13;SRR=5570;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:46:21,25:21:756:25:900:-67.4736,0,-54.5198	0/1:114:58,56:58:2080:56:2004:-146.287,0,-153.153	0/1:201:114,87:114:4077:87:3097:-218.364,0,-306.048	0/0:27:26,1:26:932:1:36:0,-4.52953,-80.5924	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.7	0/1:91:49,42:49:1740:42:1492:-107.162,0,-129.491	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.979	0/1:85:45,40:45:1608:40:1420:-102.49,0,-119.418	0/1:80:38,42:38:1368:42:1496:-110.838,0,-99.3384	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.12	0/0:50:50,0:50:1772:0:0:0,-15.0515,-159.203	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/1:35:20,15:20:716:15:532:-37.677,0,-54.2293	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1505	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:175:107,68:107:3814:68:2440:-167.116,0,-289.277	0/0:218:218,0:218:7812:0:0:0,-65.6245,-703.108	0/1:95:18,77:18:648:77:2732:-217.442,0,-27.1843	0/1:150:74,76:74:2641:76:2707:-198.702,0,-191.671	0/1:85:42,43:42:1512:43:1523:-111.45,0,-110.787	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:373:193,180:193:6928:180:6429:-465.922,0,-480.171	0/0:159:159,0:159:5708:0:0:0,-47.8638,-513.565	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:525:525,0:525:18777:0:0:0,-158.041,-1614.75	0/1:145:55,90:55:1955:90:3194:-243.901,0,-132.576	0/0:157:157,0:157:5624:0:0:0,-47.2617,-505.169	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:3,1:3:108:1:36:-2.36931,0,-8.87105	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:244:167,77:167:5981:77:2737:-173.015,0,-435.948	0/1:167:71,96:71:2548:96:3387:-254.581,0,-179.298	0/0:31:30,0:30:1080:0:0:0,-9.0309,-97.1534	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:172:88,84:88:3145:84:2980:-216.601,0,-231.474	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/0:120:120,0:120:4289:0:0:0,-36.1236,-386.163	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:52:25,27:25:900:27:955:-70.5888,0,-65.1092	0/1:176:78,98:78:2791:98:3494:-261.246,0,-187.721	0/1:63:28,35:28:1004:35:1252:-94.0064,0,-71.711	0/0:148:141,7:141:5033:7:252:0,-21.5235,-428.461	0/1:69:36,33:36:1280:33:1180:-85.737,0,-92.5022	0/1:106:59,47:59:2105:47:1675:-119.09,0,-157.808	0/0:154:154,0:154:5508:0:0:0,-46.3586,-481.359	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/0:120:119,1:119:4256:1:36:0,-32.5253,-379.621	0/1:82:50,32:50:1792:32:1144:-78.5566,0,-131.682	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:136:79,57:79:2828:57:2040:-142.858,0,-213.819	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.6441	0/1:17:13,4:13:468:4:144:-8.19139,0,-35.1048	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:82:37,45:37:1328:45:1595:-119.14,0,-94.5803	0/1:4:3,1:3:104:1:32:-1.99519,0,-8.49869	0/1:359:261,98:261:9340:98:3486:-205.496,0,-691.707	0/1:148:62,86:62:2228:86:3057:-230.709,0,-155.118	0/1:62:26,36:26:928:36:1288:-97.5236,0,-65.1744	0/0:82:80,2:80:2850:2:72:0,-17.8477,-249.901	0/1:153:92,61:92:3300:61:2176:-149.741,0,-251.159	0/1:140:47,93:47:1683:93:3309:-255.79,0,-108.498	0/1:26:17,9:17:608:9:316:-20.9343,0,-47.2252	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:45:26,19:26:920:19:676:-47.5932,0,-66.4057	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.346	0/1:61:26,35:26:928:35:1252:-94.5942,0,-65.4754	0/1:149:56,93:56:2012:93:3270:-249.648,0,-136.5	0/0:231:231,0:231:8296:0:0:0,-69.5379,-746.632	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.207	0/1:148:83,65:83:2972:65:2312:-163.778,0,-223.16	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:131:67,64:67:2400:64:2288:-166.709,0,-176.822	0/0:102:102,0:102:3648:0:0:0,-30.7051,-328.525	0/0:216:215,0:215:7691:0:0:0,-64.7214,-690.157	0/1:51:21,30:21:756:30:1072:-81.3726,0,-53.0147	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:111:55,55:55:1963:55:1946:-141.927,0,-143.465	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:56:29,27:29:1040:27:972:-70.9241,0,-77.0567	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:62:32,30:32:1148:30:1076:-78.4714,0,-84.966	0/1:119:48,71:48:1728:71:2547:-193.648,0,-119.983	0/0:179:179,0:179:6381:0:0:0,-53.8844,-573.825	0/0:78:77,0:77:2772:0:0:0,-23.1793,-248.893
chr11	1779955	.	C	G	40303.8	PASS	AB=0.521912;ABP=21.8528;AC=50;AF=0.268817;AN=186;AO=2373;CIGAR=1X;DP=7960;DPB=7960;DPRA=1.39129;EPP=5086.66;EPPR=11849.8;GTI=2;LEN=1;MEANALT=1.17857;MQM=59.3169;MQMR=59.8789;NS=93;NUMALT=1;ODDS=0.49845;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84384;QR=199226;RO=5575;RPL=2365;RPP=5086.66;RPPR=11849.8;RPR=8;RUN=1;SAF=0;SAP=5155.91;SAR=2373;SRF=0;SRP=12109;SRR=5575;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1444:0:0:0,-12.3422,-130.253	0/1:48:21,27:21:756:27:972:-73.3485,0,-53.9174	0/1:109:56,52:56:2003:52:1852:-134.089,0,-147.672	0/1:202:112,90:112:3981:90:3224:-229.447,0,-297.66	0/0:27:26,1:26:932:1:36:0,-4.52953,-80.5924	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:73:73,0:73:2575:0:0:0,-21.9752,-231.996	0/0:101:99,1:99:3507:1:36:0,-26.8646,-312.239	0/1:92:44,47:44:1580:47:1675:-123.256,0,-114.738	0/0:91:91,0:91:3236:0:0:0,-27.3937,-291.459	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:85:43,42:43:1532:42:1504:-110.066,0,-112.581	0/1:78:37,41:37:1328:41:1449:-107.209,0,-96.3419	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.631	0/1:39:21,18:21:756:18:648:-46.9117,0,-56.5382	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.029	0/1:8:3,5:3:108:5:180:-14.1423,0,-7.66693	0/1:171:103,68:103:3700:68:2401:-164.332,0,-281.655	0/0:222:222,0:222:7947:0:0:0,-66.8287,-715.235	0/1:85:10,75:10:351:75:2632:-211.443,0,-6.33808	0/1:152:74,78:74:2636:78:2779:-204.587,0,-191.714	0/1:80:42,38:42:1493:38:1360:-98.6182,0,-110.58	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.184	0/1:274:103,171:103:3685:171:6094:-465.609,0,-249.333	0/0:158:155,1:155:5559:1:20:0,-45.1989,-498.383	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:294:294,0:294:10525:0:0:0,-88.5028,-946.961	0/1:144:55,89:55:1976:89:3161:-241.309,0,-134.766	0/0:155:155,0:155:5536:0:0:0,-46.6596,-498.367	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:3,1:3:108:1:32:-1.98511,0,-8.87105	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:159:86,73:86:3073:73:2611:-187.269,0,-228.933	0/1:162:72,90:72:2569:90:3166:-235.888,0,-182.691	0/0:32:32,0:32:1152:0:0:0,-9.63296,-102.36	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:172:89,83:89:3176:83:2963:-215.002,0,-233.347	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:121:121,0:121:4309:0:0:0,-36.4246,-387.964	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:54:25,29:25:900:29:1028:-76.5651,0,-65.0654	0/1:147:48,98:48:1716:98:3499:-269.618,0,-110.564	0/1:66:28,38:28:1000:38:1317:-98.3991,0,-70.4474	0/0:148:141,7:141:5032:7:248:0,-21.8882,-430.305	0/1:65:32,33:32:1139:33:1176:-86.5808,0,-83.2514	0/1:104:57,47:57:2029:47:1688:-120.859,0,-151.574	0/0:115:114,0:114:4064:0:0:0,-34.3174,-365.545	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:122:121,1:121:4332:1:36:0,-33.1274,-386.444	0/1:68:33,34:33:1179:34:1220:-89.5496,0,-85.8851	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:134:77,57:77:2768:57:2040:-143.481,0,-209.023	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:8:6,2:6:216:2:64:-3.66851,0,-17.3823	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.476	0/1:81:38,43:38:1364:43:1531:-113.684,0,-98.6773	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:246:146,100:146:5223:100:3574:-247.437,0,-396.154	0/1:143:62,81:62:2224:81:2853:-213.419,0,-156.61	0/1:65:27,38:27:953:38:1339:-101.119,0,-66.5164	0/0:88:86,2:86:3076:2:72:0,-19.6539,-270.223	0/1:156:92,64:92:3297:64:2241:-154.865,0,-249.984	0/1:143:47,96:47:1680:96:3408:-262.149,0,-108.436	0/1:27:17,10:17:612:10:360:-24.581,0,-47.2856	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:36:17,19:17:597:19:663:-49.1279,0,-43.2108	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:98:98,0:98:3493:0:0:0,-29.5009,-314.557	0/1:61:27,34:27:964:34:1186:-88.6644,0,-68.714	0/1:151:54,95:54:1925:95:3370:-258.333,0,-128.384	0/0:234:232,1:232:8271:1:36:0,-66.9015,-740.765	0/0:57:57,0:57:2021:0:0:0,-17.1587,-182.139	0/1:144:81,62:81:2855:62:2210:-155.742,0,-213.778	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:133:69,64:69:2456:64:2296:-166.827,0,-181.22	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.713	0/0:213:213,0:213:7637:0:0:0,-64.1194,-687.324	0/1:50:21,29:21:756:29:1040:-78.7257,0,-53.3157	0/0:51:51,0:51:1828:0:0:0,-15.3525,-163.437	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.028	0/1:109:55,54:55:1976:54:1936:-141.69,0,-145.296	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:56:29,27:29:1040:27:967:-70.4687,0,-77.0567	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:62:32,30:32:1148:30:1071:-78.0201,0,-84.966	0/1:123:48,75:48:1724:75:2688:-205.129,0,-118.419	0/0:178:178,0:178:6362:0:0:0,-53.5833,-572.668	0/0:79:79,0:79:2823:0:0:0,-23.7814,-253.953
chr11	1815119	.	G	A	20343.2	PASS	AB=0.424824;ABP=156.458;AC=50;AF=0.265957;AN=188;AO=1341;CIGAR=1X;DP=5607;DPB=5607;DPRA=1.16533;EPP=2837.31;EPPR=9140.91;GTI=2;LEN=1;MEANALT=1.09259;MQM=59.9724;MQMR=59.5906;NS=94;NUMALT=1;ODDS=2.49638;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46889;QR=152108;RO=4260;RPL=9;RPP=2837.31;RPPR=9149.55;RPR=1332;RUN=1;SAF=1341;SAP=2914.95;SAR=0;SRF=4259;SRP=9244.8;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3195	0/1:32:16,16:16:576:16:568:-41.8189,0,-42.5195	0/1:69:36,33:36:1281:33:1141:-82.2223,0,-94.7632	0/1:193:116,77:116:4153:77:2631:-178.932,0,-315.789	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7726	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.399	0/0:83:83,0:83:2959:0:0:0,-24.9855,-266.345	0/1:50:37,13:37:1332:13:449:-25.686,0,-105.108	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.19	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.932	0/1:76:42,34:42:1512:34:1198:-85.2448,0,-113.496	0/1:69:27,42:27:972:42:1496:-114.163,0,-66.9819	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.701	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.321	0/0:41:40,1:40:1408:1:36:0,-8.74395,-123.389	0/1:29:13,16:13:456:16:572:-43.0836,0,-32.6342	0/0:42:42,0:42:1481:0:0:0,-12.6433,-133.582	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/1:60:50,10:50:1760:10:348:-13.5933,0,-140.611	0/0:136:136,0:136:4845:0:0:0,-40.9401,-436.172	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/1:86:50,36:50:1792:36:1254:-87.2695,0,-135.674	0/1:18:14,4:14:500:4:144:-7.8935,0,-39.9176	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.51	0/1:181:106,75:106:3800:75:2630:-182.46,0,-287.702	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.841	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3858	0/0:168:168,0:168:6016:0:0:0,-50.573,-541.506	0/1:88:51,37:51:1802:37:1286:-89.5461,0,-135.934	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.135	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7542	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:112:65,47:65:2340:47:1658:-115.79,0,-177.131	0/1:55:41,13:41:1476:13:445:-23.7982,0,-116.56	0/0:32:31,1:31:1112:1:32:0,-6.43365,-96.9148	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:108:75,33:75:2696:33:1139:-70.298,0,-210.277	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.561	0/0:92:90,2:90:3217:2:72:0,-20.858,-282.873	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:50:27,23:27:960:23:797:-56.9944,0,-71.6566	0/1:65:52,13:52:1822:13:464:-22.5306,0,-144.685	0/1:39:22,16:22:788:16:572:-40.0531,0,-59.431	0/0:94:94,0:94:3320:0:0:0,-28.2968,-298.987	0/1:38:12,26:12:424:26:928:-72.3991,0,-27.0408	0/1:102:66,36:66:2352:36:1216:-79.0274,0,-181.226	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.968	0/1:6:3,3:3:108:3:89:-6.49818,0,-8.26899	0/0:81:81,0:81:2887:0:0:0,-24.3834,-259.976	0/1:51:28,22:28:1004:22:761:-53.397,0,-75.2609	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:117:69,48:69:2457:48:1646:-113.201,0,-186.137	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.483	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:55:54,0:54:1898:0:0:0,-16.2556,-170.691	0/1:76:37,39:37:1332:39:1380:-101.62,0,-97.2926	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.55181	0/1:71:43,27:43:1536:27:941:-63.6279,0,-117.16	0/1:123:78,45:78:2785:45:1600:-107.264,0,-213.827	0/1:43:18,25:18:640:25:875:-66.1218,0,-44.929	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.888	0/1:108:65,43:65:2313:43:1468:-99.892,0,-175.898	0/1:97:37,60:37:1328:60:2059:-156.374,0,-90.6056	0/1:36:20,16:20:720:16:572:-40.9763,0,-54.2917	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.357	0/1:49:27,22:27:972:22:773:-55.139,0,-73.0428	0/1:33:17,16:17:593:16:572:-41.8794,0,-43.7607	0/0:82:82,0:82:2912:0:0:0,-24.6845,-262.238	0/1:71:41,30:41:1463:30:1065:-74.7863,0,-110.592	0/1:129:81,48:81:2851:48:1651:-110.037,0,-217.964	0/0:200:200,0:200:7177:0:0:0,-60.206,-645.955	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1525	0/1:85:56,29:56:2012:29:1025:-66.9698,0,-155.766	0/1:15:8,7:8:288:7:241:-17.5059,0,-21.7158	0/1:86:51,35:51:1824:35:1222:-84.3909,0,-138.309	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.569	0/0:139:139,0:139:4967:0:0:0,-41.8432,-447.107	0/1:32:23,9:23:828:9:305:-18.1443,0,-65.2112	0/0:69:68,1:68:2433:1:36:0,-17.1728,-215.595	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.53	0/1:102:56,46:56:2008:46:1625:-115.832,0,-150.28	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2496	0/1:51:26,25:26:924:25:896:-65.6078,0,-68.1245	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.678	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.796	0/1:102:43,59:43:1539:59:2087:-157.39,0,-108.097	0/1:61:17,44:17:608:44:1564:-122.689,0,-36.681	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:63:59,3:59:2116:3:108:0,-8.94784,-180.634
chr11	1815151	.	GGA	TGA	86888.2	PASS	AB=0.546043;ABP=62.7984;AC=138;AF=0.734043;AN=188;AO=4211;CIGAR=1X2M;DP=5712;DPB=5718;DPRA=12.2731;EPP=9138.4;EPPR=2593.27;GTI=2;LEN=1;MEANALT=1.23656;MQM=59.5787;MQMR=59.9851;NS=94;NUMALT=1;ODDS=1.82185;PAIRED=0;PAIREDR=0;PAO=6;PQA=208;PQR=0;PRO=6;QA=150266;QR=50163;RO=1474;RPL=4209;RPP=9129.72;RPPR=2593.27;RPR=2;RUN=1;SAF=4208;SAP=9121.04;SAR=3;SRF=1474;SRP=3203.76;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:892:-80.5981,-7.52575,0	0/1:33:17,16:17:602:16:568:-41.4954,0,-44.5755	0/1:74:36,37:36:1226:37:1320:-96.7893,0,-88.3788	0/1:191:74,117:74:2540:117:4152:-316.277,0,-171.291	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:62:0,62:0:0:62:2220:-200.031,-18.6639,0	1/1:82:0,80:0:0:80:2849:-255.881,-24.0824,0	0/1:53:16,37:16:560:37:1328:-103.859,0,-34.7736	1/1:71:0,70:0:0:70:2504:-225.118,-21.0721,0	1/1:31:0,31:0:0:31:1108:-100.023,-9.33193,0	0/1:74:33,41:33:1123:41:1464:-109.713,0,-79.0259	0/1:74:44,30:44:1491:30:1079:-74.8315,0,-112.202	1/1:60:0,60:0:0:60:2135:-192.385,-18.0618,0	1/1:49:0,49:0:0:49:1751:-157.754,-14.7505,0	1/1:42:1,41:1:36:41:1463:-128.337,-9.04499,0	0/1:30:18,12:18:614:12:428:-29.8053,0,-46.5486	1/1:43:0,42:0:0:42:1499:-134.952,-12.6433,0	0/1:19:8,11:8:274:11:396:-30.2632,0,-19.2726	0/1:60:12,47:12:408:47:1676:-132.999,0,-18.9266	1/1:133:0,132:0:0:132:4713:-423.914,-39.736,0	0/1:26:19,7:19:662:7:252:-15.2022,0,-52.0766	0/1:86:36,50:36:1265:50:1787:-135.164,0,-88.2055	0/1:19:5,14:5:170:14:504:-39.9785,0,-9.91377	1/1:37:0,37:0:0:37:1324:-119.435,-11.1381,0	0/1:189:78,110:78:2623:110:3948:-298.482,0,-179.306	1/1:126:0,126:0:0:126:4509:-405.897,-37.9298,0	1/1:17:0,17:0:0:17:595:-53.8491,-5.11751,0	1/1:165:0,164:0:0:164:5867:-527.912,-49.3689,0	0/1:89:39,50:39:1307:50:1760:-131.861,0,-91.1311	1/1:53:0,50:0:0:50:1778:-159.95,-15.0515,0	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3585	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.7542,-1.80618,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:114:49,65:49:1674:65:2318:-174.549,0,-116.624	0/1:63:20,43:20:633:43:1540:-119.914,0,-38.3032	1/1:31:1,30:1:28:30:1068:-93.3551,-6.5322,0	0/1:5:3,2:3:106:2:68:-4.95256,0,-8.38395	0/1:114:38,76:38:1283:76:2716:-210.273,0,-81.4458	1/1:13:0,13:0:0:13:464:-42.0837,-3.91339,0	1/1:92:2,90:2:72:90:3207:-282.072,-21.0181,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:52:25,27:25:843:27:968:-71.7756,0,-60.5236	0/1:70:18,50:18:602:50:1778:-139.491,0,-33.6859	0/1:56:31,25:31:1029:25:896:-64.0124,0,-76.052	1/1:94:0,94:0:0:94:3376:-304.025,-28.2968,0	0/1:43:29,14:29:965:14:504:-32.7374,0,-74.2063	0/1:108:41,67:41:1417:67:2382:-182.117,0,-95.3122	1/1:50:0,50:0:0:50:1781:-160.567,-15.0515,0	0/1:6:3,3:3:100:3:108:-8.26899,0,-7.52368	1/1:79:0,78:0:0:78:2804:-252.231,-23.4803,0	0/1:54:23,31:23:820:31:1103:-83.3114,0,-57.8673	1/1:11:0,11:0:0:11:378:-34.3491,-3.31133,0	0/1:118:52,64:52:1735:64:2292:-171.327,0,-121.234	1/1:45:0,45:0:0:45:1592:-143.567,-13.5464,0	0/1:8:6,2:6:214:2:72:-4.42848,0,-17.1995	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	1/1:52:0,52:0:0:52:1843:-166.099,-15.6536,0	0/1:76:39,36:39:1352:36:1288:-93.2837,0,-99.0394	0/1:5:3,2:3:100:2:72:-5.33157,0,-7.82471	0/1:71:29,42:29:982:42:1504:-114.281,0,-67.3112	0/1:124:50,72:50:1716:72:2560:-193.477,0,-117.646	0/1:47:30,17:30:993:17:612:-41.2089,0,-75.5214	1/1:64:0,63:0:0:63:2206:-198.591,-18.9649,0	0/1:125:61,62:61:2067:62:2219:-162.624,0,-148.962	0/1:99:63,36:63:2159:36:1273:-85.0525,0,-164.775	0/1:36:16,20:16:541:20:720:-54.2917,0,-38.1719	1/1:42:0,42:0:0:42:1508:-135.947,-12.6433,0	0/1:52:25,27:25:876:27:960:-71.0581,0,-63.5025	0/1:31:15,16:15:526:16:563:-41.5899,0,-38.26	1/1:84:0,84:0:0:84:3016:-271.58,-25.2865,0	0/1:72:30,42:30:1047:42:1495:-113.169,0,-72.863	0/1:125:53,72:53:1777:72:2567:-193.572,0,-122.514	1/1:202:0,200:0:0:200:7134:-641.742,-60.206,0	1/1:16:0,16:0:0:16:572:-51.7909,-4.81648,0	0/1:83:29,54:29:988:54:1922:-148.27,0,-64.2377	0/1:14:6,8:6:214:8:288:-22.0168,0,-15.3933	0/1:93:43,49:43:1454:49:1756:-130.149,0,-103.094	1/1:62:0,62:0:0:62:2200:-198.195,-18.6639,0	1/1:136:1,135:1:36:135:4839:-431.974,-37.3418,0	0/1:30:9,21:9:312:21:756:-59.3363,0,-19.3841	1/1:70:1,69:1:36:69:2445:-216.667,-17.4738,0	1/1:43:0,43:0:0:43:1517:-136.818,-12.9443,0	0/1:102:48,54:48:1596:54:1932:-143.45,0,-113.214	1/1:8:0,8:0:0:8:288:-26.2496,-2.40824,0	0/1:52:25,26:25:830:26:936:-68.924,0,-59.3704	1/1:63:0,63:0:0:63:2226:-200.305,-18.9649,0	1/1:51:0,51:0:0:51:1820:-164.068,-15.3525,0	0/1:107:63,44:63:2164:44:1574:-109.47,0,-162.816	0/1:67:49,18:49:1664:18:640:-37.7521,0,-129.874	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:63:3,60:3:108:60:2147:-183.413,-8.88972,0
chr11	2028526	.	C	T	54175.9	PASS	AB=0.505826;ABP=4.93339;AC=49;AF=0.263441;AN=186;AO=3314;CIGAR=1X;DP=12179;DPB=12179;DPRA=1.12689;EPP=7190.59;EPPR=19248.8;GTI=1;LEN=1;MEANALT=1;MQM=59.9949;MQMR=59.9919;NS=93;NUMALT=1;ODDS=1.33727;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116180;QR=315946;RO=8863;RPL=3314;RPP=7199.27;RPPR=19248.8;RPR=0;RUN=1;SAF=1;SAP=7190.59;SAR=3313;SRF=0;SRP=19248.8;SRR=8863;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:31,25:31:1108:25:872:-61.9387,0,-83.1733	0/1:225:104,121:104:3679:121:4257:-315.578,0,-263.58	0/1:156:71,85:71:2533:85:2986:-222.012,0,-181.259	0/1:280:135,145:135:4810:145:5056:-370.905,0,-348.766	0/0:104:102,2:102:3660:2:72:0,-24.4704,-322.766	0/0:149:149,0:149:5313:0:0:0,-44.8535,-478.305	0/0:228:227,0:227:8107:0:0:0,-68.3338,-729.284	0/0:261:261,0:261:9307:0:0:0,-78.5688,-837.596	0/1:153:89,64:89:3170:64:2234:-155.264,0,-239.464	0/0:89:89,0:89:3151:0:0:0,-26.7917,-283.812	0/0:82:82,0:82:2902:0:0:0,-24.6845,-261.414	0/1:91:45,46:45:1593:46:1609:-117.703,0,-116.265	0/1:84:39,45:39:1404:45:1597:-118.732,0,-101.373	0/0:124:124,0:124:4414:0:0:0,-37.3277,-397.431	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:83:83,0:83:2957:0:0:0,-24.9855,-266.362	0/1:85:42,43:42:1478:43:1532:-112.586,0,-107.723	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:41:27,14:27:968:14:492:-32.2701,0,-75.0951	0/1:244:118,126:118:4228:126:4380:-320.929,0,-307.248	0/0:304:303,0:303:10803:0:0:0,-91.2121,-971.812	0/1:83:29,54:29:1044:54:1866:-143.23,0,-69.2893	0/1:110:59,51:59:2085:51:1797:-128.897,0,-154.805	0/1:188:106,82:106:3812:82:2801:-195.736,0,-286.682	0/0:102:102,0:102:3637:0:0:0,-30.7051,-327.534	0/1:526:268,258:268:9544:258:9104:-661.005,0,-700.574	0/0:299:299,0:299:10719:0:0:0,-90.008,-964.614	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:291:290,1:290:10333:1:32:0,-84.4004,-926.692	0/1:229:108,121:108:3834:121:4243:-313.117,0,-276.32	0/0:223:222,1:222:7923:1:36:0,-63.5314,-709.494	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.977	0/1:249:130,119:130:4619:119:4213:-304.397,0,-340.915	0/1:117:56,61:56:2004:61:2130:-156.745,0,-145.413	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:264:137,127:137:4901:127:4424:-318.867,0,-361.768	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:191:191,0:191:6802:0:0:0,-57.4967,-612.253	0/0:109:109,0:109:3920:0:0:0,-32.8123,-352.991	0/1:79:38,41:38:1364:41:1459:-107.823,0,-99.2793	0/1:138:63,75:63:2241:75:2623:-194.779,0,-160.41	0/1:105:55,50:55:1976:50:1764:-127.435,0,-146.506	0/0:168:164,4:164:5822:4:144:0,-37.2594,-510.782	0/1:185:94,91:94:3357:91:3124:-225.698,0,-246.655	0/1:164:86,78:86:3069:78:2742:-197.653,0,-227.069	0/0:201:201,0:201:7134:0:0:0,-60.507,-641.493	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:142:142,0:142:5051:0:0:0,-42.7463,-454.733	0/1:68:20,48:20:716:48:1662:-129.393,0,-44.2977	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:144:56,88:56:1993:88:3077:-233.812,0,-136.294	0/0:77:77,0:77:2708:0:0:0,-23.1793,-243.959	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:26:16,10:16:576:10:348:-23.8284,0,-44.3482	0/0:92:90,2:90:3194:2:72:0,-20.858,-280.845	0/1:144:72,72:72:2584:72:2552:-186.584,0,-189.46	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:204:109,95:109:3882:95:3326:-238.15,0,-288.162	0/1:305:163,142:163:5811:142:4997:-358.072,0,-431.286	0/1:128:65,63:65:2328:63:2217:-161.262,0,-171.248	0/0:101:101,0:101:3582:0:0:0,-30.404,-322.586	0/1:192:67,125:67:2400:125:4424:-340.54,0,-158.459	0/1:121:41,80:41:1464:80:2786:-214.552,0,-95.6314	0/1:44:22,22:22:788:22:788:-57.9995,0,-57.9995	0/0:118:118,0:118:4175:0:0:0,-35.5215,-375.817	0/1:111:56,55:56:1978:55:1943:-141.73,0,-144.877	0/1:29:19,10:19:680:10:352:-23.2883,0,-52.7993	0/0:147:147,0:147:5237:0:0:0,-44.2514,-471.469	0/1:98:52,46:52:1849:46:1597:-114.513,0,-137.187	0/1:117:61,56:61:2173:56:1939:-139.561,0,-160.614	0/0:185:185,0:185:6629:0:0:0,-55.6905,-596.686	0/0:169:169,0:169:6011:0:0:0,-50.8741,-541.094	0/1:164:74,90:74:2637:90:3144:-233.817,0,-188.207	0/0:11:10,1:10:360:1:32:0,-0.112017,-29.545	0/1:171:98,73:98:3492:73:2507:-174.406,0,-263.014	0/0:149:149,0:149:5276:0:0:0,-44.8535,-474.975	0/0:365:365,0:365:12944:0:0:0,-109.876,-1164.78	0/1:148:85,63:85:3025:63:2224:-155.871,0,-227.927	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/0:132:132,0:132:4695:0:0:0,-39.736,-422.71	0/1:176:88,88:88:3121:88:3113:-227.417,0,-228.136	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:86:44,42:44:1580:42:1481:-107.694,0,-116.603	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.554	0/1:86:42,44:42:1493:44:1553:-114.171,0,-108.774	0/1:88:28,60:28:1008:60:2137:-166.106,0,-64.5457	0/0:150:150,0:150:5353:0:0:0,-45.1545,-481.903	0/0:136:135,1:135:4810:1:36:0,-37.3418,-429.456
chr11	2028819	.	ACCCG	ACCCA	25715.9	PASS	AB=0.478362;ABP=17.0123;AC=50;AF=0.265957;AN=188;AO=1650;CIGAR=4M1X;DP=6019;DPB=6018.6;DPRA=1.26698;EPP=3585.94;EPPR=9329.49;GTI=1;LEN=1;MEANALT=1.96078;MQM=59.9679;MQMR=59.9963;NS=94;NUMALT=1;ODDS=1.03684;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57278;QR=138645;RO=4299;RPL=1650;RPP=3585.94;RPPR=9312.13;RPR=0;RUN=1;SAF=1650;SAP=3585.94;SAR=0;SRF=4295;SRP=9303.46;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:7,7:7:235:7:248:-18.1262,0,-16.9448	0/1:61:30,28:30:975:28:992:-71.7904,0,-70.2489	0/1:113:71,36:71:2261:36:1263:-81.2015,0,-171.262	0/1:112:48,64:48:1555:64:2207:-165.18,0,-106.519	0/0:9:9,0:9:295:0:0:0,-2.70927,-26.8699	0/0:32:32,0:32:1055:0:0:0,-9.63296,-95.2494	0/0:42:41,0:41:1314:0:0:0,-12.3422,-118.188	0/0:78:78,0:78:2477:0:0:0,-23.4803,-223.19	0/1:86:39,46:39:1277:46:1611:-119.38,0,-89.3257	0/0:72:72,0:72:2378:0:0:0,-21.6742,-214.283	0/0:53:53,0:53:1713:0:0:0,-15.9546,-154.451	0/1:88:52,36:52:1648:36:1220:-83.6045,0,-122.109	0/1:76:38,38:38:1243:38:1283:-92.8847,0,-89.2865	0/0:83:82,0:82:2617:0:0:0,-24.6845,-235.425	0/0:83:83,0:83:2701:0:0:0,-24.9855,-243.344	0/0:65:64,0:64:2046:0:0:0,-19.2659,-184.051	0/1:32:18,14:18:583:14:487:-34.5262,0,-43.1469	0/0:33:33,0:33:1095:0:0:0,-9.93399,-98.8514	0/1:33:20,13:20:642:13:456:-31.4392,0,-48.1508	0/1:38:22,14:22:711:14:477:-32.1329,0,-53.1804	0/0:135:134,0:134:4227:0:0:0,-40.338,-380.293	0/1:8:2,6:2:57:6:199:-15.8272,0,-3.00507	0/1:81:42,39:42:1351:39:1361:-98.4029,0,-97.4958	0/1:57:30,26:30:967:26:870:-61.533,0,-70.2563	0/0:35:34,0:34:1098:0:0:0,-10.235,-98.7557	0/1:128:65,60:65:2085:60:2124:-153.469,0,-149.961	0/0:117:117,0:117:3766:0:0:0,-35.2205,-339.168	0/0:35:35,0:35:1122:0:0:0,-10.536,-101.273	0/0:113:112,0:112:3611:0:0:0,-33.7154,-324.901	0/1:118:49,65:49:1563:65:2245:-167.69,0,-106.328	0/0:68:68,0:68:2185:0:0:0,-20.47,-196.916	0/1:9:3,6:3:93:6:212:-16.7155,0,-5.96909	0/0:13:13,0:13:390:0:0:0,-3.91339,-35.3935	0/0:6:6,0:6:194:0:0:0,-1.80618,-17.7776	0/0:2:2,0:2:53:0:0:0,-0.60206,-5.03442	0/0:18:18,0:18:570:0:0:0,-5.41854,-51.6031	0/1:217:108,107:108:3481:107:3691:-267.37,0,-248.552	0/1:122:59,62:59:1887:62:2171:-158.912,0,-133.361	0/0:58:57,0:57:1853:0:0:0,-17.1587,-166.728	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:71:33,37:33:1061:37:1298:-95.7365,0,-74.4038	0/0:38:38,0:38:1245:0:0:0,-11.4391,-112.343	0/0:66:66,0:66:2141:0:0:0,-19.868,-192.96	0/0:64:64,0:64:2078:0:0:0,-19.2659,-187.291	0/1:53:32,21:32:1017:21:714:-48.621,0,-75.8691	0/1:82:46,36:46:1521:36:1258:-88.8363,0,-112.493	0/1:57:34,22:34:1125:22:772:-52.6319,0,-84.3795	0/0:65:62,1:62:2014:1:32:0,-16.0988,-178.307	0/1:44:27,17:27:841:17:595:-40.6314,0,-62.7382	0/1:93:39,53:39:1248:53:1839:-137.733,0,-84.5558	0/0:38:38,0:38:1248:0:0:0,-11.4391,-112.615	0/0:1:1,0:1:31:0:0:0,-0.30103,-3.09945	0/0:90:90,0:90:2932:0:0:0,-27.0927,-264.129	0/1:25:13,12:13:422:12:419:-30.5169,0,-30.768	0/0:5:5,0:5:154:0:0:0,-1.50515,-14.1649	0/1:92:45,47:45:1442:47:1630:-119.292,0,-102.371	0/0:38:36,0:36:1175:0:0:0,-10.8371,-105.688	0/1:3:1,2:1:35:2:72:-5.93363,0,-2.59554	0/1:6:3,2:3:88:2:72:-5.01832,0,-6.41597	0/0:48:47,0:47:1504:0:0:0,-14.1484,-135.284	0/1:126:71,54:71:2311:54:1876:-131.216,0,-170.356	0/1:2:1,1:1:30:1:27:-2.09772,0,-2.39751	0/1:97:55,42:55:1759:42:1466:-103.033,0,-129.387	0/1:107:50,53:50:1617:53:1839:-134.485,0,-114.509	0/1:52:30,21:30:979:21:747:-51.8898,0,-72.7464	0/0:59:59,0:59:1914:0:0:0,-17.7608,-172.534	0/1:99:43,53:43:1356:53:1768:-130.164,0,-93.0931	0/1:110:43,66:43:1343:66:2286:-172.927,0,-88.0804	0/1:50:36,13:36:1179:13:448:-25.5398,0,-91.2955	0/0:42:42,0:42:1346:0:0:0,-12.6433,-121.427	0/1:51:20,29:20:652:29:994:-74.7754,0,-43.9952	0/1:15:10,5:10:334:5:172:-11.3025,0,-25.8689	0/0:105:104,1:104:3329:1:36:0,-28.0099,-296.25	0/1:69:22,46:22:694:46:1624:-125.717,0,-42.0262	0/1:103:53,47:53:1731:47:1648:-118.196,0,-125.664	0/0:106:106,0:106:3464:0:0:0,-31.9092,-311.99	0/0:24:24,0:24:769:0:0:0,-7.22472,-69.5113	0/1:86:46,39:46:1470:39:1355:-96.3685,0,-106.704	0/1:8:3,4:3:103:4:144:-10.9185,0,-7.21452	0/1:71:45,26:45:1401:26:932:-62.8257,0,-104.998	0/0:30:30,0:30:973:0:0:0,-9.0309,-87.8688	0/0:101:100,0:100:3259:0:0:0,-30.103,-293.326	0/1:73:43,30:43:1383:30:1055:-73.2848,0,-102.782	0/0:78:77,0:77:2525:0:0:0,-23.1793,-227.239	0/0:67:67,0:67:2117:0:0:0,-20.169,-190.797	0/1:109:54,53:54:1765:53:1842:-133.571,0,-126.641	0/0:21:21,0:21:686:0:0:0,-6.32163,-62.0474	0/1:81:38,42:38:1242:42:1488:-109.841,0,-87.7007	0/0:77:76,0:76:2495:0:0:0,-22.8783,-224.451	0/0:62:62,0:62:2039:0:0:0,-18.6639,-183.783	0/1:140:79,60:79:2524:60:2071:-144.535,0,-185.297	0/1:73:23,47:23:728:47:1606:-123.437,0,-44.4349	0/0:106:106,0:106:3393:0:0:0,-31.9092,-305.608	0/0:94:94,0:94:3039:0:0:0,-28.2968,-273.754
chr11	2028859	.	A	G	42152.9	PASS	AB=0.519183;ABP=18.3392;AC=53;AF=0.281915;AN=188;AO=2499;CIGAR=1X;DP=8208;DPB=8208;DPRA=1.32658;EPP=5429.52;EPPR=12352.2;GTI=1;LEN=1;MEANALT=1.01852;MQM=59.948;MQMR=59.9823;NS=94;NUMALT=1;ODDS=2.13607;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88838;QR=203757;RO=5707;RPL=1;RPP=5420.84;RPPR=12360.9;RPR=2498;RUN=1;SAF=1;SAP=5420.84;SAR=2498;SRF=1;SRP=12386.9;SRR=5706;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:12,14:12:428:14:504:-37.8713,0,-31.032	0/1:134:70,62:70:2493:62:2198:-157.987,0,-184.526	0/1:84:53,31:53:1899:31:1107:-74.6536,0,-145.901	0/1:260:115,145:115:4120:145:5148:-385.195,0,-292.716	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:37:37,0:37:1323:0:0:0,-11.1381,-119.371	0/0:86:85,1:85:3037:1:36:0,-22.2903,-269.96	0/0:115:115,0:115:4101:0:0:0,-34.6184,-369.275	0/1:63:23,40:23:828:40:1425:-109.581,0,-55.8792	0/0:133:132,1:132:4720:1:36:0,-36.4387,-421.357	0/0:47:47,0:47:1677:0:0:0,-14.1484,-151.215	0/1:85:44,41:44:1575:41:1455:-105.658,0,-116.453	0/1:85:37,48:37:1320:48:1669:-124.892,0,-93.5144	0/0:69:69,0:69:2445:0:0:0,-20.7711,-220.304	0/0:82:82,0:82:2899:0:0:0,-24.6845,-261.145	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/1:78:39,39:39:1384:39:1359:-99.1244,0,-101.378	0/0:61:61,0:61:2178:0:0:0,-18.3628,-196.285	0/1:35:20,15:20:720:15:536:-38.0388,0,-54.5927	0/1:145:74,71:74:2632:71:2499:-181.507,0,-193.476	0/0:144:144,0:144:5153:0:0:0,-43.3483,-463.909	0/1:86:20,66:20:720:66:2335:-184.519,0,-39.2402	0/1:68:33,35:33:1184:35:1235:-90.9819,0,-86.3937	0/1:81:49,32:49:1741:32:1149:-79.3366,0,-132.589	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:257:148,109:148:5301:109:3890:-272.93,0,-399.858	0/0:149:149,0:149:5330:0:0:0,-44.8535,-479.833	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.441	0/0:236:236,0:236:8449:0:0:0,-71.0431,-760.41	0/1:91:35,56:35:1256:56:1987:-151.71,0,-85.9516	0/0:111:109,2:109:3888:2:72:0,-26.5776,-343.276	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:255:129,126:129:4615:126:4498:-328.224,0,-338.751	0/1:153:71,82:71:2528:82:2912:-216.257,0,-181.712	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:125:56,69:56:1969:69:2472:-185.103,0,-139.852	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:88:88,0:88:3143:0:0:0,-26.4906,-283.095	0/0:109:109,0:109:3885:0:0:0,-32.8123,-349.799	0/1:103:56,47:56:2012:47:1653:-118.049,0,-150.347	0/1:53:35,18:35:1256:18:636:-41.6134,0,-97.3907	0/1:78:36,42:36:1275:42:1489:-110.822,0,-91.5719	0/0:138:138,0:138:4960:0:0:0,-41.5421,-446.545	0/1:97:57,40:57:2044:40:1427:-99.4985,0,-155.032	0/1:145:60,85:60:2127:85:3060:-231.979,0,-148.046	0/0:132:132,0:132:4740:0:0:0,-39.736,-426.754	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:79:79,0:79:2814:0:0:0,-23.7814,-253.496	0/1:147:81,66:81:2889:66:2355:-167.957,0,-215.993	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:93:51,42:51:1815:42:1478:-105.312,0,-135.635	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:11:6,5:6:212:5:178:-13.0573,0,-16.1135	0/0:52:52,0:52:1864:0:0:0,-15.6536,-167.91	0/1:118:49,69:49:1751:69:2480:-187.845,0,-122.352	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	0/1:299:145,154:145:5187:154:5486:-403.858,0,-376.925	0/1:172:82,90:82:2936:90:3210:-237.185,0,-212.697	0/1:60:22,38:22:777:38:1364:-104.999,0,-52.1886	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.523	0/1:127:59,68:59:2105:68:2420:-179.823,0,-151.487	0/1:95:29,66:29:1023:66:2338:-182.081,0,-63.7839	0/1:19:9,10:9:306:10:352:-26.2914,0,-22.149	0/0:80:80,0:80:2849:0:0:0,-24.0824,-256.647	0/1:89:34,55:34:1224:55:1941:-148.171,0,-83.6754	0/1:20:9,11:9:309:11:388:-29.2368,0,-22.1201	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:70:25,45:25:891:45:1612:-124.298,0,-59.4367	0/1:112:54,58:54:1940:58:2038:-149.974,0,-141.161	0/0:145:145,0:145:5169:0:0:0,-43.6493,-465.348	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/1:111:69,42:69:2463:42:1508:-102.6,0,-188.509	0/1:7:4,3:4:144:3:99:-7.12937,0,-11.2064	0/1:71:36,35:36:1277:35:1247:-91.1609,0,-93.858	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.732	0/0:150:150,0:150:5336:0:0:0,-45.1545,-480.375	0/1:136:72,64:72:2563:64:2274:-163.981,0,-189.98	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.531	0/0:126:126,0:126:4483:0:0:0,-37.9298,-403.636	0/1:203:91,112:91:3233:112:4008:-299.799,0,-230.083	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.435	0/1:94:42,52:42:1481:52:1823:-136.051,0,-105.286	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.272	0/1:67:33,34:33:1188:34:1220:-89.9296,0,-87.0596	0/1:78:25,53:25:900:53:1887:-146.627,0,-57.8407	0/0:137:136,1:136:4868:1:36:0,-37.6428,-434.675	0/0:109:109,0:109:3903:0:0:0,-32.8123,-351.46
chr11	2173039	.	T	C	62196.4	PASS	AB=0.370607;ABP=412.669;AC=135;AF=0.725806;AN=186;AO=3252;CIGAR=1X;DP=5134;DPB=5134;DPRA=18.9815;EPP=7064.64;EPPR=4087.55;GTI=5;LEN=1;MEANALT=1.01111;MQM=42.5175;MQMR=56.53;NS=93;NUMALT=1;ODDS=0.064003;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115377;QR=67089;RO=1881;RPL=0;RPP=7064.64;RPPR=4087.55;RPR=3252;RUN=1;SAF=0;SAP=7064.64;SAR=3252;SRF=0;SRP=4087.55;SRR=1881;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:883:-78.1825,-7.52575,0	0/1:91:67,24:67:2372:24:847:-47.6333,0,-186.222	1/1:113:1,112:1:36:112:3983:-346.795,-30.4191,0	0/1:86:56,30:56:1997:30:1052:-66.68,0,-153.564	1/1:33:0,33:0:0:33:1184:-104.62,-9.93399,0	1/1:21:0,21:0:0:21:756:-66.8992,-6.32163,0	1/1:75:0,75:0:0:75:2649:-229.1,-22.5773,0	1/1:51:0,51:0:0:51:1780:-154.992,-15.3525,0	0/1:71:33,38:33:1188:38:1319:-94.5393,0,-85.8287	1/1:47:0,47:0:0:47:1688:-147.625,-14.1484,0	1/1:21:0,21:0:0:21:752:-66.4551,-6.32163,0	0/1:45:24,21:24:860:21:739:-51.9653,0,-64.1275	0/1:43:19,24:19:684:24:852:-61.9419,0,-48.9306	1/1:35:0,35:0:0:35:1240:-109.74,-10.5361,0	1/1:40:0,40:0:0:40:1412:-123.998,-12.0412,0	1/1:33:0,33:0:0:33:1159:-102.274,-9.93399,0	0/1:49:31,18:31:1116:18:644:-42.3212,0,-85.8367	0/1:30:12,18:12:432:18:631:-47.0083,0,-30.1812	0/1:19:12,7:12:428:7:252:-16.8568,0,-33.0244	0/1:154:120,34:120:4254:34:1212:-59.446,0,-336.287	1/1:88:0,88:0:0:88:3110:-272.009,-26.4906,0	0/0:105:97,8:97:3461:8:288:0,-5.79445,-285.575	0/1:36:20,16:20:716:16:564:-39.0332,0,-53.8898	0/1:80:38,42:38:1348:42:1495:-107.546,0,-97.4165	1/1:26:0,26:0:0:26:924:-78.6603,-7.82678,0	0/1:206:135,71:135:4768:71:2527:-161.05,0,-365.876	1/1:122:0,122:0:0:122:4319:-380.114,-36.7257,0	1/1:25:0,25:0:0:25:884:-77.6397,-7.52575,0	1/1:106:0,106:0:0:106:3775:-332.107,-31.9092,0	0/1:59:34,25:34:1220:25:872:-58.8372,0,-92.0271	1/1:35:0,35:0:0:35:1241:-108.831,-10.5361,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9392	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.263,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.10258,-0.60206,0	0/1:132:59,73:59:2120:73:2580:-188.68,0,-151.055	0/1:116:76,40:76:2717:40:1411:-88.8248,0,-209.033	1/1:48:0,48:0:0:48:1708:-149.203,-14.4494,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	1/1:54:0,54:0:0:54:1927:-168.579,-16.2556,0	1/1:19:0,19:0:0:19:676:-58.629,-5.71957,0	1/1:64:0,64:0:0:64:2269:-198.561,-19.2659,0	1/1:38:0,38:0:0:38:1337:-116.328,-11.4391,0	0/1:46:25,21:25:900:21:741:-51.2162,0,-67.3357	0/1:38:23,15:23:824:15:540:-36.6254,0,-63.0214	0/1:88:69,19:69:2442:19:668:-32.7882,0,-193.373	1/1:63:0,63:0:0:63:2264:-198.315,-18.9649,0	0/1:77:53,24:53:1870:24:860:-52.7149,0,-145.202	0/1:96:65,31:65:2336:31:1116:-68.7165,0,-181.457	1/1:41:0,41:0:0:41:1450:-127.95,-12.3422,0	0/1:14:8,6:8:284:6:216:-15.0504,0,-21.636	1/1:55:0,55:0:0:55:1965:-173.129,-16.5567,0	0/1:15:13,2:13:460:2:72:-2.20318,0,-37.1168	0/1:9:5,4:5:180:4:144:-10.3185,0,-13.768	0/1:92:57,35:57:2040:35:1233:-80.6295,0,-155.469	0/1:8:4,4:4:144:4:144:-10.5687,0,-10.8098	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3084	0/1:11:8,3:8:284:3:108:-6.58981,0,-22.5847	1/1:14:0,14:0:0:14:500:-43.3393,-4.21442,0	0/1:71:41,30:41:1472:30:1071:-72.5774,0,-111.098	0/1:3:1,2:1:36:2:72:-5.83799,0,-2.69259	0/1:155:107,48:107:3805:48:1724:-105.863,0,-295.776	0/1:175:126,49:126:4504:49:1732:-99.6284,0,-352.116	0/1:53:34,19:34:1186:19:684:-43.525,0,-90.9976	1/1:9:0,9:0:0:9:309:-27.1123,-2.70927,0	0/1:145:97,48:97:3472:48:1707:-106.527,0,-268.208	1/1:64:0,64:0:0:64:2283:-199.286,-19.2659,0	0/1:7:6,1:6:216:1:36:-1.4138,0,-17.6739	1/1:32:0,32:0:0:32:1135:-99.2495,-9.63296,0	1/1:51:0,51:0:0:51:1800:-159.242,-15.3525,0	0/1:10:7,3:7:252:3:108:-6.79726,0,-20.003	1/1:33:0,33:0:0:33:1141:-100.911,-9.93399,0	0/1:47:28,19:28:1008:19:676:-45.3078,0,-75.3625	1/1:70:0,70:0:0:70:2495:-218.571,-21.0721,0	1/1:82:0,82:0:0:82:2932:-256.565,-24.6845,0	1/1:67:0,67:0:0:67:2349:-206.805,-20.169,0	0/1:82:59,23:59:2093:23:811:-46.8131,0,-163.802	0/1:15:7,8:7:252:8:279:-20.4289,0,-18.5071	0/1:63:44,19:44:1580:19:655:-38.25,0,-123.097	1/1:58:0,58:0:0:58:2067:-182.618,-17.4597,0	1/1:134:0,133:0:0:133:4756:-414.769,-40.037,0	0/1:57:29,28:29:1040:28:964:-67.959,0,-76.5281	1/1:33:0,33:0:0:33:1180:-103.103,-9.93399,0	1/1:55:0,55:0:0:55:1947:-170.448,-16.5567,0	0/1:85:45,40:45:1616:40:1405:-98.2843,0,-119.876	1/1:33:0,33:0:0:33:1162:-102.49,-9.93399,0	0/1:58:23,35:23:824:35:1244:-92.048,0,-56.6176	1/1:34:0,34:0:0:34:1208:-105.787,-10.235,0	1/1:12:0,12:0:0:12:424:-37.3912,-3.61236,0	0/1:44:30,14:30:1076:14:495:-30.717,0,-83.8662	0/1:36:23,13:23:820:13:468:-30.4948,0,-63.2351	1/1:68:0,68:0:0:68:2420:-212.023,-20.47,0	1/1:68:1,67:1:36:67:2388:-204.711,-16.8744,0
chr11	2197450	.	A	C	126026	PASS	AB=0.538263;ABP=52.1974;AC=142;AF=0.755319;AN=188;AO=6083;CIGAR=1X;DP=7888;DPB=7888;DPRA=21.1935;EPP=13212.1;EPPR=3911.66;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.9842;MQMR=59.9972;NS=94;NUMALT=1;ODDS=2.04005;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=214873;QR=63996;RO=1800;RPL=6083;RPP=13212.1;RPPR=3911.66;RPR=0;RUN=1;SAF=6083;SAP=13212.1;SAR=0;SRF=1800;SRP=3911.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1580:-142.488,-13.5464,0	0/1:107:51,56:51:1820:56:1989:-147.072,0,-131.871	1/1:103:0,103:0:0:103:3640:-327.804,-31.0061,0	0/1:155:59,96:59:2120:96:3408:-260.275,0,-144.409	1/1:56:0,56:0:0:56:1979:-178.384,-16.8577,0	1/1:78:0,78:0:0:78:2763:-248.911,-23.4803,0	1/1:107:0,107:0:0:107:3788:-341.117,-32.2102,0	1/1:153:0,153:0:0:153:5433:-489.1,-46.0576,0	0/1:50:14,36:14:504:36:1279:-100.361,0,-30.6466	1/1:103:1,102:1:32:102:3592:-320.287,-27.8068,0	1/1:64:0,64:0:0:64:2254:-203.12,-19.2659,0	0/1:47:21,26:21:740:26:899:-67.0729,0,-52.775	0/1:44:18,26:18:648:26:906:-68.6081,0,-45.4066	1/1:64:0,64:0:0:64:2218:-199.882,-19.2659,0	1/1:50:0,50:0:0:50:1718:-154.898,-15.0515,0	1/1:32:2,30:2:72:30:1037:-86.7997,-2.79624,0	0/1:49:21,28:21:740:28:989:-74.5715,0,-52.1729	0/1:37:20,17:20:720:17:590:-42.2869,0,-53.9907	0/1:28:9,19:9:320:19:628:-48.3996,0,-20.7135	0/1:131:62,69:62:2205:69:2451:-181.41,0,-159.279	1/1:84:1,83:1:36:83:2929:-260.246,-21.6882,0	0/1:81:53,28:53:1900:28:1000:-65.9314,0,-146.894	0/1:111:60,51:60:2140:51:1802:-129.044,0,-159.454	0/1:116:52,64:52:1847:64:2265:-169.191,0,-131.59	1/1:61:0,61:0:0:61:2159:-194.577,-18.3628,0	0/1:358:152,206:152:5406:206:7314:-550.545,0,-378.902	1/1:210:0,209:0:0:209:7406:-666.224,-62.9153,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:211:1,208:1:36:208:7392:-661.733,-59.6768,0	0/1:163:65,97:65:2316:97:3441:-260.777,0,-159.574	1/1:97:0,97:0:0:97:3428:-308.735,-29.1999,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:3:0,3:0:0:3:100:-9.33044,-0.90309,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:5:0,5:0:0:5:172:-15.8174,-1.50515,0	0/1:133:58,75:58:2064:75:2670:-200.508,0,-145.994	0/1:241:107,134:107:3797:134:4768:-356.73,0,-269.381	1/1:61:0,61:0:0:61:2138:-192.685,-18.3628,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:98:0,98:0:0:98:3427:-308.641,-29.5009,0	1/1:30:0,30:0:0:30:1058:-95.5296,-9.0309,0	1/1:141:0,141:0:0:141:5030:-452.845,-42.4452,0	1/1:37:0,37:0:0:37:1315:-118.651,-11.1381,0	0/1:35:19,16:19:676:16:572:-41.2774,0,-50.6319	0/1:91:45,46:45:1589:46:1647:-121.124,0,-115.905	0/1:93:39,54:39:1370:54:1926:-145.621,0,-95.5987	1/1:151:1,150:1:36:150:5304:-473.896,-41.8573,0	0/1:123:72,51:72:2560:51:1832:-128.134,0,-193.624	0/1:120:57,63:57:2033:63:2202:-161.948,0,-147.117	1/1:167:1,166:1:36:166:5911:-528.502,-46.6737,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:168:0,168:0:0:168:5924:-533.27,-50.573,0	0/1:56:19,37:19:684:37:1311:-101.432,0,-45.0326	0/1:16:7,9:7:252:9:316:-23.9618,0,-18.2125	0/1:107:55,52:55:1961:52:1825:-132.319,0,-144.553	0/1:34:19,15:19:676:15:532:-37.9781,0,-50.933	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	1/1:121:0,121:0:0:121:4318:-388.794,-36.4246,0	0/1:132:63,69:63:2244:69:2425:-178.77,0,-162.488	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:172:81,91:81:2823:91:3264:-242.203,0,-202.528	0/1:170:82,87:82:2909:87:3105:-228.442,0,-210.811	0/1:75:35,40:35:1248:40:1407:-104.349,0,-90.0476	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	0/1:125:54,71:54:1913:71:2541:-191.312,0,-134.817	1/1:134:0,134:0:0:134:4743:-427.028,-40.338,0	0/1:25:12,13:12:432:13:455:-33.7562,0,-31.6954	1/1:80:0,80:0:0:80:2811:-253.23,-24.0824,0	1/1:81:0,81:0:0:81:2822:-254.215,-24.3834,0	0/1:24:19,5:19:676:5:180:-9.32734,0,-53.9433	1/1:129:0,129:0:0:129:4464:-401.928,-38.8329,0	0/1:28:14,14:14:485:14:504:-37.2693,0,-35.5481	1/1:182:0,182:0:0:182:6400:-576.094,-54.7875,0	1/1:120:1,119:1:36:119:4185:-373.234,-32.5253,0	1/1:124:0,124:0:0:124:4353:-391.945,-37.3277,0	0/1:86:34,52:34:1197:52:1847:-140.621,0,-82.1448	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:88:32,56:32:1152:56:1989:-152.792,0,-77.4995	1/1:89:3,86:3:108:86:3035:-263.305,-16.7165,0	1/1:160:0,160:0:0:160:5651:-508.625,-48.1648,0	0/1:89:37,52:37:1308:52:1832:-138.366,0,-91.2298	1/1:40:0,40:0:0:40:1416:-127.736,-12.0412,0	1/1:32:1,31:1:36:31:1067:-92.735,-6.03469,0	0/1:82:35,47:35:1248:47:1655:-124.542,0,-87.9404	1/1:33:0,33:0:0:33:1124:-101.459,-9.93399,0	0/1:56:29,27:29:1036:27:964:-70.2191,0,-76.6962	1/1:41:0,41:0:0:41:1430:-128.992,-12.3422,0	1/1:42:0,42:0:0:42:1460:-131.691,-12.6433,0	0/1:118:57,61:57:2044:61:2123:-155.812,0,-148.71	0/1:33:21,12:21:733:12:428:-28.9248,0,-56.3557	1/1:81:0,81:0:0:81:2858:-257.456,-24.3834,0	1/1:55:0,55:0:0:55:1940:-174.874,-16.5567,0
chr11	2278465	.	A	G	87801.1	PASS	AB=0.542545;ABP=43.2902;AC=136;AF=0.73913;AN=184;AO=4170;CIGAR=1X;DP=5350;DPB=5350;DPRA=29.3846;EPP=9058.05;EPPR=2563.18;GTI=5;LEN=1;MEANALT=1.01099;MQM=59.9645;MQMR=55.9067;NS=92;NUMALT=1;ODDS=0.813126;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148645;QR=40702;RO=1179;RPL=0;RPP=9058.05;RPPR=2563.18;RPR=4170;RUN=1;SAF=4170;SAP=9058.05;SAR=0;SRF=1179;SRP=2563.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37:0:0:37:1316:-118.742,-11.1381,0	0/1:47:23,24:23:820:24:860:-63.5734,0,-59.7736	1/1:78:0,78:0:0:78:2755:-248.188,-23.4803,0	0/1:109:45,64:45:1516:64:2296:-174.089,0,-103.839	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:71:0,71:0:0:71:2537:-228.579,-21.3731,0	1/1:60:0,60:0:0:60:2156:-194.301,-18.0618,0	0/1:38:10,28:10:337:28:987:-77.6969,0,-19.1971	1/1:54:0,54:0:0:54:1917:-172.805,-16.2556,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:50:16,34:16:548:34:1224:-95.414,0,-33.7997	0/1:43:17,26:17:608:26:932:-71.2546,0,-41.9866	1/1:44:0,44:0:0:44:1569:-141.5,-13.2453,0	1/1:36:0,36:0:0:36:1277:-115.231,-10.8371,0	1/1:34:0,34:0:0:34:1205:-108.754,-10.235,0	0/1:51:24,27:24:848:27:972:-72.4454,0,-61.2364	0/1:26:15,11:15:520:11:396:-28.156,0,-39.1527	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.8868	0/1:89:36,53:36:1215:53:1889:-143.495,0,-82.6694	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:81:56,25:56:1896:25:870:-54.2286,0,-146.371	0/1:35:20,15:20:712:15:540:-38.4005,0,-53.7693	0/1:71:26,45:26:886:45:1608:-123.637,0,-58.6076	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:210:112,98:112:3889:98:3486:-250.733,0,-285.49	1/1:136:0,136:0:0:136:4830:-434.855,-40.9401,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:199:0,199:0:0:199:7109:-639.867,-59.905,0	0/1:49:19,30:19:626:30:1059:-80.8691,0,-41.7241	1/1:71:0,71:0:0:71:2513:-226.422,-21.3731,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82968	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:137:47,90:47:1629:90:3206:-247.519,0,-105.4	0/1:81:41,40:41:1383:40:1436:-105.154,0,-99.9396	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	.:.:.:.:.:.:.:.	1/1:93:0,93:0:0:93:3313:-298.388,-27.9958,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:95:0,95:0:0:95:3368:-303.333,-28.5979,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:34:16,18:16:560:18:644:-48.0556,0,-40.3975	0/1:92:35,57:35:1156:57:1988:-151.493,0,-76.5716	0/1:41:14,27:14:458:27:964:-74.2432,0,-29.0827	1/1:89:3,86:3:104:86:3080:-267.731,-17.0946,0	0/1:69:40,29:40:1392:29:1021:-71.4008,0,-104.749	0/1:63:30,33:30:1037:33:1169:-86.5504,0,-74.0426	1/1:202:1,201:1:36:201:7173:-642.029,-57.2098,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.1982	1/1:76:0,76:0:0:76:2713:-244.412,-22.8783,0	0/1:30:16,14:16:560:14:500:-36.3053,0,-41.6396	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.73467	0/1:68:19,49:19:648:49:1760:-138.214,0,-37.1622	0/1:37:23,14:23:797:14:500:-34.1695,0,-60.7383	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09268	0/1:12:4,8:4:136:8:280:-21.9269,0,-8.96202	1/1:31:0,31:0:0:31:1096:-98.9499,-9.33193,0	0/1:89:39,50:39:1380:50:1785:-134.139,0,-97.3266	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.48935	0/1:157:74,82:74:2554:82:2916:-215.356,0,-182.029	0/1:70:42,28:42:1438:28:1004:-69.6034,0,-108.576	0/1:26:16,10:16:568:10:360:-24.9175,0,-43.4732	1/1:46:1,45:1:36:45:1604:-141.054,-10.2508,0	0/1:84:45,39:45:1576:39:1374:-98.6681,0,-116.651	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1452	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:56:26,30:26:908:30:1072:-79.9348,0,-65.0573	0/1:18:8,10:8:284:10:360:-27.3258,0,-20.4035	1/1:75:0,75:0:0:75:2655:-239.191,-22.5773,0	0/1:30:23,7:23:774:7:251:-13.907,0,-60.1867	1/1:100:0,100:0:0:100:3554:-320.067,-30.103,0	1/1:135:0,135:0:0:135:4829:-434.763,-40.6391,0	1/1:98:0,98:0:0:98:3490:-314.309,-29.5009,0	0/1:56:21,35:21:724:35:1252:-96.1274,0,-47.522	0/1:8:1,7:1:36:7:248:-20.256,0,-1.18744	0/1:67:26,41:26:893:41:1464:-111.875,0,-60.3964	1/1:85:0,85:0:0:85:3022:-272.183,-25.5876,0	1/1:219:1,218:1:36:218:7755:-694.382,-62.3273,0	0/1:82:47,35:47:1633:35:1237:-86.9478,0,-122.1	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:49:0,49:0:0:49:1726:-155.621,-14.7505,0	0/1:88:29,59:29:1005:59:2097:-162.507,0,-63.4474	1/1:40:0,40:0:0:40:1440:-129.875,-12.0412,0	0/1:35:16,19:16:556:19:680:-50.9931,0,-39.8006	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:47:16,31:16:560:31:1112:-86.2429,0,-36.5347	0/1:32:16,16:16:564:16:576:-42.542,0,-41.3777	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0
chr11	2278522	.	C	T	17646.8	PASS	AB=0.453898;ABP=49.6613;AC=48;AF=0.26087;AN=184;AO=1152;CIGAR=1X;DP=5264;DPB=5264;DPRA=0.897105;EPP=2504.55;EPPR=8925.59;GTI=6;LEN=1;MEANALT=1.04082;MQM=55.9722;MQMR=59.9623;NS=92;NUMALT=1;ODDS=0.802714;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40458;QR=144651;RO=4109;RPL=1152;RPP=2504.55;RPPR=8899.55;RPR=0;RUN=1;SAF=1152;SAP=2504.55;SAR=0;SRF=4106;SRP=8899.55;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1220:0:0:0,-10.536,-110.101	0/1:47:24,23:24:856:23:812:-59.1444,0,-63.2127	0/0:75:75,0:75:2666:0:0:0,-22.5772,-240.185	0/1:107:62,45:62:2169:45:1592:-111.196,0,-163.266	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/0:23:23,0:23:808:0:0:0,-6.92369,-73.0401	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/0:57:57,0:57:2024:0:0:0,-17.1587,-182.43	0/1:37:26,10:26:919:10:348:-20.44,0,-71.8233	0/0:54:54,0:54:1867:0:0:0,-16.2556,-168.304	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.484	0/1:48:33,15:33:1171:15:532:-33.6634,0,-91.2472	0/1:46:28,18:28:989:18:619:-42.1407,0,-75.4746	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/0:37:37,0:37:1299:0:0:0,-11.1381,-117.21	0/0:33:33,0:33:1158:0:0:0,-9.93399,-104.525	0/1:48:27,21:27:960:21:748:-53.1494,0,-72.2668	0/1:26:11,15:11:392:15:536:-40.5455,0,-27.7933	0/1:15:6,9:6:216:9:315:-24.0702,0,-15.2751	0/1:89:51,38:51:1801:38:1352:-94.9255,0,-135.578	0/0:25:25,0:25:866:0:0:0,-7.52575,-78.2539	0/1:80:25,55:25:862:55:1928:-149.525,0,-53.8083	0/1:33:15,18:15:519:18:614:-45.5531,0,-37.1027	0/1:75:48,27:48:1668:27:939:-62.0671,0,-127.824	0/0:25:25,0:25:879:0:0:0,-7.52575,-78.404	0/1:202:96,106:96:3392:106:3727:-273.953,0,-244.688	0/0:136:136,0:136:4803:0:0:0,-40.9401,-432.43	0/0:21:21,0:21:733:0:0:0,-6.32163,-66.2897	0/0:194:194,0:194:6883:0:0:0,-58.3998,-619.543	0/1:46:29,17:29:1031:17:587:-38.8895,0,-79.2552	0/0:72:72,0:72:2541:0:0:0,-21.6742,-227.687	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9835	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:138:93,45:93:3242:45:1579:-100.599,0,-250.46	0/1:80:39,41:39:1388:41:1423:-102.975,0,-101.137	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	.:.:.:.:.:.:.:.	0/0:87:87,0:87:3056:0:0:0,-26.1896,-275.268	0/0:16:16,0:16:546:0:0:0,-4.81648,-49.4593	0/0:94:94,0:94:3279:0:0:0,-28.2968,-295.331	0/0:37:37,0:37:1312:0:0:0,-11.1381,-118.382	0/1:33:17,16:17:591:16:547:-39.525,0,-43.5813	0/1:91:56,35:56:1953:35:1224:-82.9867,0,-148.648	0/1:40:26,14:26:918:14:481:-31.4617,0,-70.8941	0/0:85:82,3:82:2881:3:108:0,-15.519,-249.46	0/1:64:26,38:26:928:38:1352:-102.653,0,-64.5439	0/1:65:33,32:33:1180:32:1140:-82.664,0,-86.9411	0/0:203:203,0:203:7135:0:0:0,-61.1091,-642.215	0/1:7:3,4:3:108:4:136:-10.4621,0,-7.96796	0/0:76:76,0:76:2616:0:0:0,-22.8783,-235.686	0/1:32:15,17:15:515:17:608:-45.3666,0,-37.042	0/1:10:8,2:8:288:2:72:-3.73467,0,-23.2571	0/1:63:46,17:46:1627:17:578:-32.9926,0,-127.753	0/1:34:13,21:13:446:21:756:-58.0277,0,-30.2314	0/1:5:4,1:4:144:1:36:-2.09268,0,-11.8085	0/1:13:7,5:7:239:5:156:-10.5147,0,-18.0127	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:86:49,37:49:1737:37:1309:-91.8739,0,-130.724	0/1:7:6,1:6:207:1:36:-1.48935,0,-16.8597	0/1:159:83,76:83:2904:76:2679:-192.978,0,-213.731	0/1:71:30,41:30:1060:41:1464:-110.581,0,-74.3381	0/1:24:9,15:9:324:15:523:-40.0281,0,-22.2811	0/0:48:47,1:47:1657:1:36:0,-10.8529,-145.819	0/1:84:40,44:40:1415:44:1547:-114.088,0,-102.36	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:10:5,5:5:180:5:165:-12.135,0,-13.5418	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:56:31,25:31:1085:25:892:-63.5959,0,-81.0993	0/1:19:11,8:11:375:8:279:-19.6478,0,-28.3583	0/0:72:72,0:72:2547:0:0:0,-21.6742,-229.482	0/1:27:6,21:6:216:21:739:-57.9491,0,-11.6627	0/0:101:101,0:101:3552:0:0:0,-30.404,-319.891	0/0:131:131,0:131:4609:0:0:0,-39.4349,-414.976	0/0:94:94,0:94:3308:0:0:0,-28.2968,-297.941	0/1:56:36,20:36:1264:20:712:-47.4092,0,-97.2021	0/1:9:8,1:8:288:1:36:-0.88641,0,-23.5581	0/1:66:41,25:41:1441:25:865:-57.8546,0,-110.087	0/0:79:79,0:79:2789:0:0:0,-23.7814,-251.251	0/0:216:215,0:215:7571:0:0:0,-64.7214,-681.079	0/1:77:34,43:34:1204:43:1466:-108.71,0,-85.4865	0/0:35:35,0:35:1206:0:0:0,-10.536,-108.838	0/0:49:49,0:49:1724:0:0:0,-14.7505,-155.442	0/1:89:58,31:58:2051:31:1095:-71.2394,0,-158.07	0/0:38:38,0:38:1336:0:0:0,-11.4391,-120.528	0/1:35:17,18:17:599:18:635:-46.8998,0,-43.702	0/0:38:38,0:38:1331:0:0:0,-11.4391,-120.086	0/0:20:20,0:20:696:0:0:0,-6.0206,-62.9597	0/1:49:32,17:32:1114:17:595:-39.0761,0,-85.8127	0/1:29:15,14:15:506:14:504:-36.878,0,-37.128	0/0:69:69,0:69:2443:0:0:0,-20.7711,-220.126	0/0:70:70,0:70:2475:0:0:0,-21.0721,-223.002
chr11	2278613	.	G	C	13190.1	PASS	AB=0.352459;ABP=533.562;AC=47;AF=0.25;AN=188;AO=992;CIGAR=1X;DP=6494;DPB=6494;DPRA=0.745197;EPP=2157.11;EPPR=11937.4;GTI=7;LEN=1;MEANALT=1.06122;MQM=60;MQMR=59.9967;NS=94;NUMALT=1;ODDS=2.18467;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35172;QR=194098;RO=5496;RPL=0;RPP=2157.11;RPPR=11937.4;RPR=992;RUN=1;SAF=0;SAP=2157.11;SAR=992;SRF=0;SRP=11937.4;SRR=5496;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/1:42:26,16:26:923:16:572:-39.1702,0,-70.7435	0/0:84:83,0:83:2935:0:0:0,-24.9855,-264.026	0/1:96:76,20:76:2683:20:701:-34.5128,0,-212.815	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/0:100:100,0:100:3508:0:0:0,-30.103,-315.929	0/0:105:105,0:105:3701:0:0:0,-31.6081,-333.29	0/1:50:43,7:43:1521:7:248:-7.61269,0,-122.13	0/0:85:85,0:85:2976:0:0:0,-25.5875,-268.069	0/0:70:70,0:70:2446:0:0:0,-21.0721,-220.393	0/1:50:24,26:24:860:26:920:-68.0656,0,-62.6703	0/1:38:19,19:19:676:19:676:-49.7289,0,-49.7289	0/0:64:64,0:64:2216:0:0:0,-19.2659,-199.702	0/0:35:35,0:35:1229:0:0:0,-10.536,-110.912	0/0:59:59,0:59:2061:0:0:0,-17.7608,-185.76	0/1:45:26,19:26:920:19:680:-47.9828,0,-69.5707	0/1:35:16,19:16:572:19:676:-50.6319,0,-41.2774	0/1:36:21,15:21:739:15:536:-37.7377,0,-55.9953	0/1:121:97,23:97:3416:23:817:-37.5111,0,-271.321	0/0:77:77,0:77:2701:0:0:0,-23.1793,-243.333	0/1:55:37,18:37:1289:18:644:-41.7339,0,-99.7519	0/1:37:27,10:27:964:10:360:-21.6062,0,-75.9387	0/1:23:4,19:4:144:19:661:-52.8879,0,-6.38993	0/0:77:74,2:74:2631:2:72:0,-16.4014,-230.201	0/1:168:110,58:110:3855:58:2051:-134.288,0,-296.575	0/0:167:167,0:167:5931:0:0:0,-50.272,-533.901	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:278:278,0:278:9765:0:0:0,-83.6863,-878.81	0/1:70:50,20:50:1754:20:708:-42.9735,0,-137.07	0/0:117:117,0:117:4141:0:0:0,-35.2205,-372.874	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	0/0:26:25,1:25:887:1:36:0,-4.2285,-76.5498	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:143:66,77:66:2328:77:2735:-203.346,0,-166.731	0/1:134:99,34:99:3523:34:1208:-68.6294,0,-276.884	0/0:67:67,0:67:2379:0:0:0,-20.169,-214.368	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:103:103,0:103:3654:0:0:0,-31.0061,-329.066	0/0:45:45,0:45:1586:0:0:0,-13.5463,-143.029	0/0:123:123,0:123:4365:0:0:0,-37.0267,-393.026	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/1:37:21,16:21:748:16:554:-39.0468,0,-56.5072	0/1:60:50,10:50:1760:10:347:-13.5018,0,-140.622	0/1:72:63,9:63:2187:9:324:-7.8317,0,-175.418	0/0:96:95,0:95:3347:0:0:0,-28.5978,-301.088	0/1:69:50,19:50:1740:19:684:-41.1193,0,-136.11	0/1:73:47,26:47:1632:26:936:-62.5843,0,-125.19	0/0:151:151,0:151:5340:0:0:0,-45.4555,-480.736	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:143:143,0:143:5040:0:0:0,-43.0473,-453.747	0/1:51:34,17:34:1194:17:599:-38.8856,0,-92.4112	0/1:12:10,2:10:341:2:72:-3.22436,0,-27.4054	0/1:46:34,12:34:1203:12:419:-24.1953,0,-94.7277	0/1:53:30,23:30:1064:23:820:-58.1679,0,-80.1171	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:23:13,10:13:460:10:360:-25.8206,0,-34.8117	0/0:102:102,0:102:3605:0:0:0,-30.7051,-324.658	0/1:110:56,54:56:1976:54:1918:-139.782,0,-144.999	0/1:10:5,5:5:172:5:176:-13.1747,0,-12.8077	0/1:148:109,39:109:3849:39:1375:-79.4954,0,-302.054	0/1:127:83,44:83:2938:44:1549:-101.469,0,-226.424	0/1:39:30,9:30:1068:9:324:-17.7657,0,-84.6919	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/1:76:38,38:38:1334:38:1356:-99.4622,0,-97.4801	0/0:68:68,0:68:2406:0:0:0,-20.47,-216.796	0/1:16:8,8:8:288:8:265:-19.3556,0,-21.4509	0/0:50:49,0:49:1736:0:0:0,-14.7505,-156.165	0/1:53:29,24:29:1023:24:856:-61.4065,0,-76.4271	0/1:27:15,12:15:536:12:432:-31.0934,0,-40.3603	0/0:104:104,0:104:3648:0:0:0,-31.3071,-328.526	0/1:35:25,10:25:891:10:356:-21.8452,0,-69.9727	0/0:148:148,0:148:5235:0:0:0,-44.5524,-471.292	0/0:139:139,0:139:4949:0:0:0,-41.8432,-445.561	0/0:115:115,0:115:4066:0:0:0,-34.6184,-366.128	0/1:50:37,13:37:1311:13:445:-25.3239,0,-103.239	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/1:63:51,12:51:1812:12:432:-20.2563,0,-144.397	0/0:96:96,0:96:3376:0:0:0,-28.8989,-304.056	0/0:165:165,0:165:5855:0:0:0,-49.6699,-527.065	0/1:91:59,32:59:2104:32:1124:-74.0715,0,-162.236	0/0:44:44,0:44:1555:0:0:0,-13.2453,-140.241	0/0:38:38,0:38:1330:0:0:0,-11.4391,-119.998	0/1:79:45,34:45:1603:34:1194:-83.9821,0,-120.778	0/0:38:38,0:38:1338:0:0:0,-11.4391,-120.718	0/1:39:20,19:20:707:19:672:-49.0667,0,-52.2144	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:109:64,45:64:2284:45:1607:-112.107,0,-173.01	0/1:42:13,29:13:451:29:1027:-80.0989,0,-28.2766	0/0:65:65,0:65:2248:0:0:0,-19.5669,-202.581	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.717
chr11	2313021	.	C	A	35431.8	PASS	AB=0.486048;ABP=10.4028;AC=46;AF=0.244681;AN=188;AO=2135;CIGAR=1X;DP=9153;DPB=9153;DPRA=1.13517;EPP=4639.1;EPPR=15233.7;GTI=1;LEN=1;MEANALT=1;MQM=59.8459;MQMR=59.8917;NS=94;NUMALT=1;ODDS=2.35129;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76276;QR=251024;RO=7018;RPL=0;RPP=4639.1;RPPR=15242.4;RPR=2135;RUN=1;SAF=2135;SAP=4639.1;SAR=0;SRF=7017;SRP=15233.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:76:74,2:74:2644:2:72:0,-16.0416,-231.37	0/1:50:31,19:31:1116:19:680:-46.2836,0,-85.694	0/0:144:144,0:144:5168:0:0:0,-43.3483,-464.155	0/1:265:146,119:146:5229:119:4245:-302.456,0,-390.973	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:46:46,0:46:1656:0:0:0,-13.8474,-148.754	0/0:140:140,0:140:4990:0:0:0,-42.1442,-449.247	0/0:114:113,1:113:4052:1:27:0,-32.658,-363.207	0/1:122:72,50:72:2568:50:1784:-124.117,0,-194.645	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.976	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:120:76,44:76:2728:44:1569:-105.246,0,-209.369	0/1:77:42,35:42:1508:35:1260:-90.5262,0,-112.827	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.25	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.829	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:26:11,15:11:396:15:540:-41.1088,0,-28.156	0/1:49:19,30:19:684:30:1076:-82.3633,0,-47.1399	0/1:28:11,17:11:396:17:608:-46.6232,0,-27.5539	0/1:163:93,70:93:3313:70:2516:-177.623,0,-249.312	0/0:174:174,0:174:6236:0:0:0,-52.3792,-561.144	0/1:117:41,76:41:1457:76:2679:-206.131,0,-96.1989	0/1:157:92,65:92:3289:65:2332:-162.878,0,-248.83	0/1:88:54,34:54:1936:34:1224:-83.9749,0,-148.026	0/0:94:94,0:94:3361:0:0:0,-28.2968,-302.704	0/1:276:147,129:147:5256:129:4617:-332.596,0,-390.058	0/0:219:219,0:219:7796:0:0:0,-65.9256,-701.279	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:323:323,0:323:11561:0:0:0,-97.2327,-1040.33	0/1:128:67,61:67:2404:61:2177:-157.657,0,-178.085	0/0:172:172,0:172:6157:0:0:0,-51.7772,-554.138	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:230:121,109:121:4348:109:3916:-281.575,0,-322.256	0/1:150:73,77:73:2604:77:2734:-201.138,0,-189.44	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.156	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:157:157,0:157:5593:0:0:0,-47.2617,-503.469	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:158:156,2:156:5574:2:68:0,-41.105,-495.054	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.14	0/1:55:35,20:35:1260:20:716:-48.2111,0,-97.1488	0/1:126:65,61:65:2328:61:2188:-159.256,0,-171.702	0/1:90:31,59:31:1112:59:2116:-163.616,0,-73.2905	0/0:175:174,1:174:6200:1:36:0,-49.082,-554.292	0/1:103:43,60:43:1544:60:2152:-162.941,0,-108.247	0/1:81:44,37:44:1576:37:1332:-95.799,0,-117.745	0/0:160:160,0:160:5701:0:0:0,-48.1648,-513.124	0/1:9:2,7:2:68:7:252:-20.3197,0,-3.74844	0/0:88:88,0:88:3148:0:0:0,-26.4906,-283.546	0/1:92:42,50:42:1485:50:1792:-133.868,0,-106.24	0/1:4:1,3:1:36:3:93:-7.47261,0,-2.39415	0/1:133:71,62:71:2536:62:2206:-158.767,0,-188.348	0/1:64:38,26:38:1364:26:912:-63.1278,0,-103.795	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:110:55,55:55:1971:55:1967:-144.188,0,-144.551	1/1:2:0,2:0:0:2:53:-5.03394,-0.60206,0	0/1:223:117,106:117:4193:106:3796:-274.708,0,-310.419	0/1:176:102,74:102:3664:74:2630:-183.952,0,-276.976	0/1:80:37,43:37:1316:43:1530:-113.909,0,-94.6594	0/0:70:70,0:70:2485:0:0:0,-21.0721,-223.893	0/1:153:69,84:69:2476:84:2989:-222.482,0,-177.031	0/0:126:126,0:126:4501:0:0:0,-37.9298,-405.258	0/1:25:16,9:16:568:9:324:-21.9801,0,-43.9261	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.347	0/1:48:21,27:21:752:27:972:-73.3485,0,-53.5568	0/1:30:17,13:17:612:13:464:-33.0666,0,-46.3825	0/0:144:144,0:144:5164:0:0:0,-43.3483,-464.077	0/1:73:39,34:39:1389:34:1220:-88.1316,0,-103.331	0/0:152:152,0:152:5435:0:0:0,-45.7566,-489.267	0/0:193:193,0:193:6878:0:0:0,-58.0988,-619.081	0/0:86:86,0:86:3057:0:0:0,-25.8886,-275.359	0/1:95:41,54:41:1472:54:1921:-144.557,0,-104.178	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:87:42,45:42:1508:45:1620:-119.9,0,-109.197	0/0:104:104,0:104:3713:0:0:0,-31.3071,-334.353	0/0:259:257,2:257:9209:2:72:0,-71.13,-821.932	0/1:60:31,29:31:1112:29:1029:-74.8593,0,-82.3295	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.496	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.106	0/1:141:71,70:71:2527:70:2486:-181.539,0,-185.233	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:61:33,28:33:1168:28:1008:-72.6702,0,-87.0644	0/0:95:95,0:95:3420:0:0:0,-28.5978,-308.011	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:116:56,60:56:2008:60:2160:-159.747,0,-146.074	0/1:78:25,53:25:896:53:1900:-147.753,0,-57.48	0/0:207:207,0:207:7380:0:0:0,-62.3132,-664.242	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.314
chr11	2313037	.	GAAAT	AAAAA,AAAAT	230561	PASS	AB=0.517069,0.481111;ABP=14.1296,16.6282;AC=142,46;AF=0.755319,0.244681;AN=188;AO=7102,2124;CIGAR=1X3M1X,1X4M;DP=9246;DPB=9246;DPRA=49.6989,1.15412;EPP=8169.18,2446.55;EPPR=5.18177;GTI=1;LEN=5,1;MEANALT=1.72043,2.16;MQM=59.8612,59.9096;MQMR=60;NS=94;NUMALT=2;ODDS=6.25345;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=252902,76157;QR=36;RO=1;RPL=967,289;RPP=8169.18,2446.55;RPPR=5.18177;RPR=6135,1835;RUN=1,1;SAF=7102,2124;SAP=15424.8,4615.22;SAR=0,0;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:79:0,79,0:0:0:79,0:2838,0:-255.636,-23.7814,0,-255.636,-23.7814,-255.636	1/2:49:0,31,18:0:0:31,18:1108,648:-143.374,-53.0392,-43.7073,-90.693,0,-85.2745	1/1:145:0,145,0:0:0:145,0:5168,0:-464.636,-43.6494,0,-464.636,-43.6494,-464.636	1/2:267:0,146,119:0:0:146,119:5219,4268:-773.661,-348.12,-304.17,-425.544,0,-389.722	1/1:47:0,47,0:0:0:47,0:1682,0:-151.667,-14.1484,0,-151.667,-14.1484,-151.667	1/1:47:0,47,0:0:0:47,0:1667,0:-150.204,-14.1484,0,-150.204,-14.1484,-150.204	1/1:147:0,146,0:0:0:146,0:5191,0:-466.973,-43.9504,0,-466.973,-43.9504,-466.973	1/1:116:0,115,0:0:0:115,0:4092,0:-366.581,-34.6185,0,-366.581,-34.6185,-366.581	1/2:124:0,74,50:0:0:74,50:2643,1784:-361.275,-145.791,-123.515,-215.841,0,-200.789	1/1:74:0,74,0:0:0:74,0:2636,0:-237.486,-22.2762,0,-237.486,-22.2762,-237.486	1/1:70:1,69,0:1:36:69,0:2459,0:-217.966,-17.4738,0,-218.267,-20.7711,-221.205	1/2:121:0,77,44:0:0:77,44:2754,1572:-352.98,-128.502,-105.323,-224.835,0,-211.59	1/2:78:0,42,36:0:0:42,36:1509,1296:-229.201,-106.107,-93.4636,-123.453,0,-112.616	1/1:88:0,87,0:0:0:87,0:3105,0:-279.23,-26.1896,0,-279.23,-26.1896,-279.23	1/1:85:0,85,0:0:0:85,0:3026,0:-272.569,-25.5876,0,-272.569,-25.5876,-272.569	1/1:65:0,65,0:0:0:65,0:2315,0:-208.61,-19.567,0,-208.61,-19.567,-208.61	1/2:26:0,11,15:0:0:11,15:395,540:-76.6417,-44.4202,-41.1088,-32.5808,0,-28.0654	1/2:49:0,19,30:0:0:19,30:672,1080:-143.125,-88.3937,-82.6741,-55.087,0,-46.0561	1/2:30:0,13,17:0:0:13,17:467,612:-88.3923,-50.2959,-46.3825,-38.4558,0,-33.3383	1/2:163:0,94,69:0:0:94,69:3336,2484:-474.841,-203.041,-174.744,-272.158,0,-251.386	1/1:175:0,175,0:0:0:175,0:6227,0:-560.515,-52.6803,0,-560.515,-52.6803,-560.515	1/2:117:0,42,74:0:0:42,74:1485,2660:-337.952,-217.009,-204.366,-120.939,0,-98.6624	1/2:157:0,92,65:0:0:92,65:3274,2336:-457.709,-190.932,-163.238,-267.134,0,-247.567	1/2:90:0,54,35:0:0:54,35:1934,1256:-260.171,-102.448,-86.1923,-157.722,0,-147.186	1/1:95:0,95,0:0:0:95,0:3397,0:-305.944,-28.5979,0,-305.944,-28.5979,-305.944	1/2:278:0,149,129:0:0:149,129:5277,4613:-806.335,-376.489,-331.635,-430.201,0,-391.369	1/1:221:0,220,0:0:0:220,0:7835,0:-704.88,-66.2266,0,-704.88,-66.2266,-704.88	1/1:39:0,39,0:0:0:39,0:1383,0:-124.769,-11.7402,0,-124.769,-11.7402,-124.769	1/1:328:0,327,0:0:0:327,0:11657,0:-1048.59,-98.4368,0,-1048.59,-98.4368,-1048.59	1/2:130:0,68,62:0:0:68,62:2415,2217:-377.904,-181.123,-160.653,-197.137,0,-178.473	1/1:174:0,174,0:0:0:174,0:6171,0:-555.455,-52.3792,0,-555.455,-52.3792,-555.455	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:4:0,4,0:0:0:4,0:139,0:-12.8522,-1.20412,0,-12.8522,-1.20412,-12.8522	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:12:0,12,0:0:0:12,0:421,0:-38.2246,-3.61236,0,-38.2246,-3.61236,-38.2246	1/1:12:0,12,0:0:0:12,0:426,0:-38.6774,-3.61236,0,-38.6774,-3.61236,-38.6774	1/2:232:0,123,109:0:0:123,109:4399,3920:-678.175,-320.179,-283.152,-358.355,0,-325.542	1/2:149:0,73,75:0:0:73,75:2604,2685:-431.294,-219.026,-197.051,-212.343,0,-189.766	1/1:56:0,56,0:0:0:56,0:2003,0:-180.533,-16.8577,0,-180.533,-16.8577,-180.533	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:159:0,158,0:0:0:158,0:5625,0:-505.362,-47.5627,0,-505.362,-47.5627,-505.362	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/1:160:0,158,2:0:0:158,2:5579,72:-501.844,-47.5627,0,-495.969,-41.3281,-495.367	1/1:62:0,62,0:0:0:62,0:2212,0:-199.344,-18.6639,0,-199.344,-18.6639,-199.344	1/2:55:0,35,20:0:0:35,20:1253,716:-160.928,-58.7471,-48.2111,-102.539,0,-96.5185	1/2:127:0,66,61:0:0:66,61:2348,2188:-369.902,-178.823,-158.955,-191.437,0,-173.074	1/2:90:0,31,59:0:0:31,59:1108,2105:-262.291,-171.957,-162.625,-90.691,0,-72.9303	1/1:176:0,174,2:0:0:174,2:6180,68:-555.934,-52.3792,0,-550.418,-46.5236,-549.816	1/2:103:0,43,60:0:0:43,60:1536,2156:-301.477,-176.245,-163.301,-125.59,0,-107.528	1/2:81:0,44,37:0:0:44,37:1558,1328:-235.589,-108.684,-95.4388,-127.261,0,-116.123	1/1:164:0,161,1:0:0:161,1:5734,32:-515.895,-48.4658,0,-513.317,-45.8689,-513.016	1/2:9:0,2,7:0:0:2,7:70,252:-26.6149,-20.9217,-20.3197,-6.04527,0,-3.93806	1/1:88:0,87,1:0:0:87,1:3075,32:-276.661,-26.1896,0,-274.083,-23.2913,-273.782	1/2:93:0,43,50:0:0:43,50:1521,1800:-271.103,-147.231,-134.286,-124.229,0,-109.177	1/2:4:0,1,3:0:0:1,3:36,104:-11.7405,-8.79971,-8.49868,-3.29724,0,-2.39415	1/2:135:0,72,63:0:0:72,63:2570,2264:-394.488,-185.057,-163.383,-209.788,0,-190.823	1/2:64:0,38,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chr11	2357265	.	C	A	130275	PASS	AB=0.510977;ABP=8.73097;AC=130;AF=0.691489;AN=188;AO=6376;CIGAR=1X;DP=9057;DPB=9057;DPRA=49.2011;EPP=13839.6;EPPR=5800.84;GTI=1;LEN=1;MEANALT=1.05435;MQM=59.9009;MQMR=59.9675;NS=94;NUMALT=1;ODDS=1.3089;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227851;QR=95244;RO=2674;RPL=1;RPP=13839.6;RPPR=5800.84;RPR=6375;RUN=1;SAF=0;SAP=13848.3;SAR=6376;SRF=0;SRP=5809.53;SRR=2674;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:27,25:27:964:25:900:-65.6675,0,-71.4233	0/1:136:67,69:67:2404:69:2475:-182.063,0,-175.676	0/1:133:51,82:51:1820:82:2940:-224.791,0,-124.044	0/1:176:76,100:76:2697:100:3536:-265.454,0,-189.993	1/1:113:0,113:0:0:113:4049:-364.55,-34.0164,0	1/1:61:1,60:1:36:60:2130:-188.369,-14.7646,0	0/1:68:35,33:35:1228:33:1184:-86.3977,0,-90.351	0/1:165:80,85:80:2859:85:3032:-223.438,0,-207.877	0/1:110:59,51:59:2108:51:1832:-132.047,0,-156.876	0/1:82:37,45:37:1315:45:1602:-119.778,0,-93.9666	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	0/1:51:25,26:25:892:26:920:-67.763,0,-65.2472	0/1:36:11,24:11:392:24:860:-66.826,0,-24.7245	0/1:37:19,18:19:672:18:635:-46.3375,0,-49.6687	1/1:51:0,51:0:0:51:1828:-164.795,-15.3525,0	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	0/1:38:23,15:23:788:15:540:-37.4797,0,-59.7942	1/1:38:0,38:0:0:38:1355:-122.247,-11.4391,0	0/1:22:15,7:15:540:7:237:-14.9909,0,-42.3139	0/1:261:130,131:130:4660:131:4699:-344.5,0,-340.992	0/1:261:129,132:129:4628:132:4718:-346.195,0,-338.113	0/1:161:116,45:116:4115:45:1616:-97.2642,0,-322.068	0/1:150:63,87:63:2255:87:3116:-235.512,0,-158.058	0/1:146:78,68:78:2779:68:2423:-174.147,0,-206.401	1/1:99:0,99:0:0:99:3530:-317.896,-29.802,0	0/1:252:116,136:116:4160:136:4871:-362.681,0,-298.723	1/1:235:0,235:0:0:235:8410:-756.828,-70.7421,0	1/1:31:0,31:0:0:31:1099:-99.2187,-9.33193,0	1/1:277:0,277:0:0:277:9916:-892.221,-83.3853,0	0/1:162:77,85:77:2753:85:3036:-224.695,0,-199.243	1/1:163:1,162:1:36:162:5783:-516.879,-45.4696,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:148:62,86:62:2176:86:3084:-233.235,0,-151.552	1/1:164:0,164:0:0:164:5867:-528.14,-49.3689,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:146:55,90:55:1972:90:3201:-244.451,0,-133.893	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:178:0,178:0:0:178:6320:-568.89,-53.5833,0	1/1:39:0,39:0:0:39:1391:-125.488,-11.7402,0	0/1:36:16,20:16:555:20:703:-52.7514,0,-39.439	0/1:162:82,80:82:2931:80:2867:-209.489,0,-215.257	0/1:115:49,66:49:1749:66:2357:-177.628,0,-123.074	1/1:205:0,205:0:0:205:7308:-657.756,-61.7112,0	0/1:88:43,45:43:1535:45:1620:-119.599,0,-111.952	0/1:137:72,65:72:2567:65:2340:-169.618,0,-190.039	0/1:189:97,92:97:3435:92:3277:-238.234,0,-252.469	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:115:46,69:46:1647:69:2483:-189.098,0,-113.853	0/1:52:25,27:25:900:27:972:-72.1443,0,-65.6675	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:104:45,59:45:1546:59:2120:-159.761,0,-108.116	1/1:82:0,82:0:0:82:2920:-263.033,-24.6845,0	0/1:8:2,6:2:72:6:216:-17.3819,0,-4.42848	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	1/1:88:0,88:0:0:88:3132:-282.105,-26.4906,0	0/1:86:36,50:36:1288:50:1791:-135.583,0,-90.335	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:197:0,197:0:0:197:7047:-634.282,-59.3029,0	0/1:166:88,78:88:3148:78:2791:-201.459,0,-233.575	0/1:53:29,24:29:1014:24:851:-60.9549,0,-75.6129	1/1:90:0,90:0:0:90:3221:-290.11,-27.0927,0	0/1:202:93,109:93:3307:109:3890:-289.48,0,-237.042	0/1:169:104,65:104:3714:65:2332:-159.265,0,-283.584	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:95:0,95:0:0:95:3401:-306.279,-28.5979,0	0/1:66:40,26:40:1436:26:936:-64.6915,0,-109.67	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:148:64,84:64:2291:84:3011:-226.668,0,-161.898	0/1:47:19,28:19:680:28:1000:-76.167,0,-47.3808	0/1:177:75,102:75:2668:102:3662:-276.384,0,-186.065	1/1:218:0,218:0:0:218:7818:-703.646,-65.6245,0	1/1:141:0,141:0:0:141:5063:-455.795,-42.4452,0	1/1:79:1,78:1:36:78:2800:-248.613,-20.1831,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:133:73,60:73:2585:60:2156:-154.27,0,-192.634	1/1:105:0,104:0:0:104:3698:-332.776,-31.3071,0	1/1:297:0,297:0:0:297:10610:-954.805,-89.4059,0	0/1:92:52,38:52:1856:38:1353:-94.6161,0,-139.867	0/1:40:17,23:17:604:23:824:-62.4137,0,-42.6494	0/1:59:29,30:29:1016:30:1063:-78.2201,0,-73.9909	1/1:115:0,115:0:0:115:4110:-370.039,-34.6185,0	1/1:49:0,49:0:0:49:1742:-157.063,-14.7505,0	0/1:50:26,24:26:920:24:848:-61.5882,0,-68.0656	0/1:53:26,27:26:936:27:964:-71.1222,0,-68.6049	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:38:24,14:24:847:14:487:-32.7201,0,-65.1096	0/1:51:26,23:26:928:23:810:-57.8814,0,-68.7282	1/1:138:0,138:0:0:138:4906:-441.49,-41.5421,0	1/1:71:0,71:0:0:71:2532:-228.126,-21.3731,0
chr11	2521118	.	A	G	169191	PASS	AB=0.474967;ABP=90.3091;AC=56;AF=0.297872;AN=188;AO=7629;CIGAR=1X;DP=26603;DPB=26603;DPRA=1.45595;EPP=16569.2;EPPR=41172;GTI=0;LEN=1;MEANALT=1.09375;MQM=58.5172;MQMR=59.7794;NS=94;NUMALT=1;ODDS=17.5934;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=270454;QR=677322;RO=18967;RPL=4670;RPP=836.282;RPPR=3607.44;RPR=2959;RUN=1;SAF=4670;SAP=836.282;SAR=2959;SRF=12289;SRP=3607.44;SRR=6678;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:105:68,37:68:2361:37:1299:-85.2201,0,-181.101	0/1:396:217,179:217:7699:179:6363:-453.397,0,-573.663	0/1:421:239,182:239:8564:182:6475:-455.484,0,-643.718	0/1:692:384,307:384:13740:307:10890:-770.844,0,-1028.05	0/0:183:183,0:183:6542:0:0:0,-55.0885,-588.837	0/0:180:180,0:180:6448:0:0:0,-54.1854,-580.373	0/1:307:155,152:155:5527:152:5395:-392.503,0,-405.134	0/1:492:294,198:294:10521:198:7013:-482.755,0,-798.624	0/1:205:112,93:112:3990:93:3256:-230.503,0,-297.354	0/1:347:222,124:222:7918:124:4359:-287.575,0,-608.102	0/0:162:162,0:162:5757:0:0:0,-48.7669,-518.201	0/1:226:115,111:115:4104:111:3931:-285.832,0,-301.5	0/1:163:84,79:84:3003:79:2786:-201.803,0,-221.425	0/1:168:95,73:95:3396:73:2551:-179.151,0,-255.233	0/0:169:168,0:168:5973:0:0:0,-50.573,-537.306	0/0:160:160,0:160:5715:0:0:0,-48.1648,-514.459	0/1:163:86,77:86:3070:77:2727:-196.455,0,-227.407	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.02	0/1:80:37,43:37:1319:43:1530:-113.788,0,-94.9288	0/1:574:322,251:322:11530:251:8884:-626.182,0,-864.696	0/1:468:238,230:238:8432:230:8132:-590.776,0,-617.761	0/1:335:131,204:131:4687:204:7231:-549.868,0,-321.141	0/1:414:248,166:248:8814:166:5910:-407.15,0,-668.307	0/1:233:126,107:126:4504:107:3816:-273.104,0,-335.36	0/0:317:317,0:317:11331:0:0:0,-95.4265,-1019.52	0/1:1032:568,463:568:20302:463:16402:-1164.47,0,-1515.18	0/0:614:613,1:613:21890:1:36:0,-181.234,-1965.79	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.903	0/0:845:844,1:844:30210:1:36:0,-250.773,-2714.18	0/1:463:230,233:230:8195:233:8298:-606.548,0,-597.548	0/0:445:445,0:445:15895:0:0:0,-133.958,-1428.93	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.107	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:529:275,254:275:9820:254:8977:-648.411,0,-724.486	0/0:529:528,1:528:18937:1:36:0,-155.647,-1700.15	0/0:138:138,0:138:4913:0:0:0,-41.5421,-442.273	0/1:10:4,6:4:140:6:216:-16.7708,0,-9.93428	0/1:388:211,177:211:7515:177:6304:-450.348,0,-559.548	0/0:82:82,0:82:2904:0:0:0,-24.6845,-261.536	0/0:463:463,0:463:16563:0:0:0,-139.377,-1489.68	0/0:177:177,0:177:6268:0:0:0,-53.2823,-564.213	0/1:158:80,78:80:2853:78:2783:-202.975,0,-209.436	0/1:266:156,110:156:5562:110:3860:-267.203,0,-420.509	0/1:357:191,166:191:6795:166:5899:-423.46,0,-504.019	0/0:540:539,1:539:19285:1:36:0,-158.958,-1731.59	0/1:212:128,84:128:4584:84:2970:-203.555,0,-348.28	0/1:449:241,208:241:8607:208:7407:-531.164,0,-638.777	0/1:405:217,188:217:7752:188:6677:-478.907,0,-575.354	0/1:33:19,14:19:684:14:495:-34.9323,0,-51.6807	0/1:358:188,170:188:6725:170:6053:-437.064,0,-497.51	0/1:198:96,102:96:3448:102:3648:-268.865,0,-250.908	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.607	0/1:349:180,169:180:6414:169:6011:-435.784,0,-471.714	0/0:165:163,2:163:5794:2:72:0,-42.8332,-514.733	0/1:44:34,10:34:1207:10:338:-17.4964,0,-95.6872	0/1:42:20,22:20:720:22:779:-57.7841,0,-52.4855	0/0:222:222,0:222:7885:0:0:0,-66.8287,-709.661	0/1:215:105,110:105:3755:110:3915:-287.609,0,-273.414	0/1:27:15,12:15:540:12:432:-31.0769,0,-40.8087	0/0:673:673,0:673:24013:0:0:0,-202.593,-2159.94	0/1:623:336,287:336:12037:287:10197:-729.011,0,-895.123	0/1:196:95,101:95:3395:101:3592:-264.357,0,-246.754	0/0:258:258,0:258:9234:0:0:0,-77.6657,-831.017	0/1:576:277,298:277:9887:298:10578:-777.53,0,-715.255	0/1:417:168,249:168:6018:249:8788:-664.79,0,-416.189	0/1:88:38,50:38:1355:50:1752:-131.323,0,-95.7591	0/0:177:177,0:177:6318:0:0:0,-53.2823,-568.396	0/1:160:81,79:81:2897:79:2816:-205.445,0,-212.6	0/1:38:10,28:10:360:28:991:-78.0247,0,-21.3052	0/1:293:166,126:166:5923:126:4481:-314.367,0,-444.649	0/1:225:107,118:107:3815:118:4173:-307.908,0,-275.761	0/1:527:264,263:264:9383:263:9247:-673.209,0,-684.934	0/0:581:581,0:581:20807:0:0:0,-174.898,-1871.37	0/0:483:483,0:483:17236:0:0:0,-145.397,-1550.3	0/0:353:350,3:350:12528:3:108:0,-96.1884,-1117.25	0/1:45:16,29:16:576:29:1040:-80.3558,0,-38.6204	0/1:240:122,118:122:4380:118:4184:-304.47,0,-321.705	0/0:475:475,0:475:16969:0:0:0,-142.989,-1526.31	0/0:664:663,1:663:23721:1:36:0,-196.288,-2130.29	0/1:170:88,82:88:3081:82:2903:-210.096,0,-226.315	0/1:162:80,82:80:2845:82:2894:-211.734,0,-207.518	0/1:189:91,98:91:3226:98:3449:-253.631,0,-233.668	0/0:287:287,0:287:10226:0:0:0,-86.3956,-919.791	0/0:59:59,0:59:2079:0:0:0,-17.7608,-187.367	0/1:182:92,90:92:3294:90:3187:-231.515,0,-241.841	0/1:188:96,92:96:3440:92:3268:-237.639,0,-253.203	0/0:115:115,0:115:4080:0:0:0,-34.6184,-367.365	0/1:212:97,115:97:3471:115:4083:-303.566,0,-248.399	0/1:184:60,124:60:2123:124:4423:-342.499,0,-135.949	0/0:375:374,1:374:13375:1:36:0,-109.288,-1199.9	0/0:233:233,0:233:8332:0:0:0,-70.14,-749.733
chr11	2521124	.	G	A	163290	PASS	AB=0.474297;ABP=93.2047;AC=56;AF=0.297872;AN=188;AO=7467;CIGAR=1X;DP=26162;DPB=26162;DPRA=1.44302;EPP=16217.4;EPPR=40572.6;GTI=0;LEN=1;MEANALT=1.04545;MQM=58.5131;MQMR=59.7925;NS=94;NUMALT=1;ODDS=19.0727;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261829;QR=659568;RO=18691;RPL=4472;RPP=637.419;RPPR=3257.82;RPR=2995;RUN=1;SAF=4472;SAP=637.419;SAR=2995;SRF=11992;SRP=3257.82;SRR=6699;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:96:63,33:63:2202:33:1176:-77.2367,0,-169.507	0/1:379:204,175:204:7139:175:6157:-440.01,0,-528.463	0/1:418:236,182:236:8386:182:6370:-447.426,0,-628.699	0/1:677:376,300:376:13281:300:10406:-732.338,0,-991.226	0/0:178:178,0:178:6241:0:0:0,-53.5833,-561.775	0/0:178:178,0:178:6271:0:0:0,-53.5833,-564.466	0/1:304:156,148:156:5520:148:5170:-373.473,0,-405.404	0/1:487:291,196:291:10232:196:6896:-473.743,0,-774.179	0/1:202:114,88:114:3982:88:3058:-214.065,0,-297.723	0/1:348:223,125:223:7889:125:4395:-290.552,0,-605.262	0/0:164:164,0:164:5689:0:0:0,-49.3689,-512.002	0/1:224:115,109:115:4059:109:3834:-277.78,0,-298.054	0/1:157:82,75:82:2915:75:2663:-192.545,0,-215.321	0/1:162:94,68:94:3289:68:2369:-164.588,0,-247.415	0/0:171:171,0:171:6005:0:0:0,-51.4761,-540.461	0/0:164:164,0:164:5824:0:0:0,-49.3689,-524.266	0/1:158:83,75:83:2924:75:2587:-185.302,0,-215.779	0/0:106:106,0:106:3763:0:0:0,-31.9092,-338.859	0/1:83:39,44:39:1378:44:1548:-114.525,0,-99.3317	0/1:573:320,253:320:11386:253:8884:-626.501,0,-852.127	0/1:428:234,194:234:8126:194:6777:-481.02,0,-601.643	0/1:336:128,207:128:4549:207:7220:-548.67,0,-308.518	0/1:418:256,162:256:9002:162:5684:-385.3,0,-683.736	0/1:226:117,108:117:4133:108:3742:-268.527,0,-304.063	0/0:319:318,1:318:11150:1:36:0,-92.4313,-999.287	0/1:1008:554,454:554:19689:454:15949:-1130.87,0,-1468.05	0/0:615:614,1:614:21697:1:36:0,-181.535,-1948.51	0/0:88:88,0:88:3124:0:0:0,-26.4906,-281.357	0/0:838:837,1:837:29653:1:36:0,-248.666,-2664.2	0/1:450:230,220:230:8016:220:7726:-559.484,0,-585.6	0/0:432:432,0:432:15240:0:0:0,-130.045,-1371.33	0/0:37:37,0:37:1308:0:0:0,-11.1381,-118.022	0/0:59:59,0:59:2076:0:0:0,-17.7608,-186.73	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/0:68:68,0:68:2387:0:0:0,-20.47,-215.061	0/1:528:273,255:273:9571:255:9028:-653.09,0,-702.411	0/0:528:527,1:527:18744:1:36:0,-155.346,-1682.82	0/0:135:134,1:134:4710:1:36:0,-37.0498,-420.435	0/1:10:4,6:4:144:6:212:-16.406,0,-10.3033	0/1:385:212,173:212:7447:173:6080:-431.062,0,-554.326	0/0:83:83,0:83:2942:0:0:0,-24.9855,-264.982	0/0:449:449,0:449:15759:0:0:0,-135.162,-1417.97	0/0:170:170,0:170:5973:0:0:0,-51.1751,-537.677	0/1:155:80,75:80:2854:75:2665:-193.264,0,-210.43	0/1:256:149,107:149:5212:107:3790:-263.86,0,-392.077	0/1:359:185,174:185:6537:174:6061:-437.304,0,-480.235	0/0:539:538,1:538:19038:1:36:0,-158.657,-1708.75	0/1:215:129,86:129:4559:86:3008:-206.07,0,-345.382	0/1:438:237,201:237:8416:201:6990:-496.982,0,-625.517	0/1:391:210,181:210:7450:181:6352:-453.93,0,-552.678	0/1:32:18,14:18:644:14:468:-32.7883,0,-48.5242	0/1:359:191,168:191:6787:168:5904:-423.337,0,-502.789	0/1:189:89,100:89:3115:100:3535:-261.406,0,-223.683	0/0:47:47,0:47:1654:0:0:0,-14.1484,-149.126	0/1:344:177,167:177:6286:167:5836:-421.594,0,-461.799	0/0:161:160,1:160:5640:1:36:0,-44.8676,-504.119	0/1:43:33,10:33:1171:10:356:-19.4305,0,-92.7497	0/1:41:20,21:20:696:21:735:-54.1237,0,-50.6174	0/0:222:222,0:222:7732:0:0:0,-66.8287,-695.882	0/1:207:107,100:107:3711:100:3526:-254.98,0,-271.874	0/1:24:13,11:13:468:11:373:-26.6563,0,-35.2349	0/0:673:673,0:673:23827:0:0:0,-202.593,-2143.4	0/1:589:324,265:324:11411:265:9290:-658.149,0,-849.356	0/1:196:95,101:95:3341:101:3583:-263.625,0,-241.868	0/0:250:250,0:250:8850:0:0:0,-75.2575,-796.484	0/1:574:274,300:274:9727:300:10515:-773.163,0,-701.442	0/1:412:165,247:165:5881:247:8750:-662.826,0,-405.373	0/1:87:37,50:37:1311:50:1753:-131.672,0,-92.1013	0/0:175:175,0:175:6181:0:0:0,-52.6802,-555.977	0/1:158:79,79:79:2792:79:2779:-202.752,0,-203.917	0/1:39:11,28:11:379:28:983:-77.0027,0,-22.7004	0/1:280:156,124:156:5462:124:4323:-304.84,0,-407.353	0/1:222:105,117:105:3742:117:4139:-305.752,0,-270.097	0/1:508:248,260:248:8670:260:9109:-666.557,0,-626.92	0/0:572:571,0:571:20279:0:0:0,-171.888,-1823.49	0/0:473:473,0:473:16635:0:0:0,-142.387,-1495.68	0/0:342:339,3:339:12026:3:104:0,-93.2494,-1072.5	0/1:47:16,31:16:563:31:1087:-83.9778,0,-36.8475	0/1:236:122,114:122:4337:114:3915:-281.481,0,-319.414	0/0:474:474,0:474:16759:0:0:0,-142.688,-1506.93	0/0:657:656,1:656:23301:1:36:0,-194.181,-2092.82	0/1:155:81,74:81:2791:74:2545:-182.493,0,-204.534	0/1:164:81,83:81:2870:83:2921:-213.562,0,-209.166	0/1:180:86,94:86:2988:94:3285:-241.595,0,-214.968	0/0:277:277,0:277:9589:0:0:0,-83.3853,-862.567	0/0:60:60,0:60:2082:0:0:0,-18.0618,-187.628	0/1:183:90,93:90:3138:93:3275:-239.066,0,-227.547	0/1:189:95,94:95:3376:94:3292:-239.496,0,-247.143	0/0:113:113,0:113:3943:0:0:0,-34.0164,-355.054	0/1:211:96,115:96:3415:115:4042:-300.145,0,-244.04	0/1:178:57,121:57:2013:121:4285:-331.893,0,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chr11	2521143	.	C	A	47423.3	PASS	AB=0.505655;ABP=4.63109;AC=56;AF=0.297872;AN=188;AO=2955;CIGAR=1X;DP=9605;DPB=9605;DPRA=1.35932;EPP=6419.71;EPPR=14341.4;GTI=0;LEN=1;MEANALT=1.05;MQM=56.6203;MQMR=59.5926;NS=94;NUMALT=1;ODDS=4.42919;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102824;QR=237182;RO=6647;RPL=0;RPP=6419.71;RPPR=14332.7;RPR=2955;RUN=1;SAF=0;SAP=6419.71;SAR=2955;SRF=1;SRP=14428.1;SRR=6646;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:19,12:19:684:12:412:-28.0709,0,-52.5308	0/1:80:36,44:36:1288:44:1548:-115.457,0,-92.1111	0/1:101:44,57:44:1576:57:1998:-149.438,0,-111.716	0/1:219:146,73:146:5217:73:2551:-163.51,0,-403.596	0/0:72:72,0:72:2583:0:0:0,-21.6742,-232.704	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.622	0/1:105:53,52:53:1877:52:1784:-129.094,0,-137.592	0/1:145:77,68:77:2743:68:2358:-168.752,0,-203.106	0/1:96:57,39:57:2031:39:1357:-93.1679,0,-154.021	0/1:110:46,64:46:1623:64:2250:-169.259,0,-113.238	0/0:111:111,0:111:3950:0:0:0,-33.4143,-354.756	0/1:123:64,59:64:2275:59:1939:-137.714,0,-167.976	0/1:93:46,47:46:1648:47:1656:-121.229,0,-120.605	0/1:82:50,32:50:1792:32:1104:-74.929,0,-136.831	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.474	0/0:91:91,0:91:3237:0:0:0,-27.3937,-291.541	0/1:42:22,20:22:788:20:703:-50.7846,0,-58.5933	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.196	0/1:56:25,31:25:887:31:1070:-79.6491,0,-63.2904	0/1:234:123,111:123:4389:111:3899:-280.202,0,-324.578	0/1:133:67,66:67:2404:66:2290:-166.219,0,-176.57	0/1:106:36,70:36:1296:70:2465:-190.081,0,-85.0338	0/1:106:64,42:64:2284:42:1483:-101.14,0,-173.866	0/1:40:27,13:27:963:13:435:-27.1912,0,-74.9447	0/0:149:148,1:148:5284:1:36:0,-41.2562,-471.945	0/1:366:177,189:177:6313:189:6613:-484.322,0,-457.223	0/0:185:185,0:185:6643:0:0:0,-55.6905,-597.9	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:324:323,1:323:11521:1:36:0,-93.9364,-1033.1	0/1:150:67,83:67:2389:83:2908:-216.628,0,-168.766	0/0:87:87,0:87:3105:0:0:0,-26.1896,-279.664	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.4	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.691	0/1:215:109,106:109:3856:106:3637:-262.525,0,-282.509	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.844	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.661	0/1:9:3,6:3:108:6:208:-16.3423,0,-7.3659	0/1:147:84,63:84:3012:63:2159:-150.171,0,-225.751	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.716	0/0:139:139,0:139:4960:0:0:0,-41.8432,-446.294	0/0:63:63,0:63:2246:0:0:0,-18.9649,-202.398	0/1:77:38,39:38:1364:39:1383:-101.421,0,-99.874	0/1:118:54,64:54:1917:64:2216:-163.899,0,-137.254	0/1:118:62,55:62:2223:55:1880:-133.795,0,-164.738	0/0:129:129,0:129:4569:0:0:0,-38.8329,-411.369	0/1:80:44,36:44:1572:36:1276:-90.9035,0,-117.059	0/1:132:73,59:73:2612:59:2075:-147.148,0,-195.426	0/1:159:85,74:85:3056:74:2574:-183.91,0,-226.835	0/1:16:9,7:9:324:7:240:-17.1058,0,-24.4144	0/1:93:51,42:51:1807:42:1479:-105.375,0,-134.887	0/1:99:45,54:45:1612:54:1894:-140.888,0,-115.565	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.653	0/1:150:65,84:65:2316:84:2931:-218.629,0,-163.424	0/0:35:35,0:35:1229:0:0:0,-10.536,-110.905	0/1:26:18,8:18:644:8:280:-17.7063,0,-50.462	0/1:20:11,9:11:392:9:316:-22.7533,0,-29.5995	0/0:99:99,0:99:3543:0:0:0,-29.802,-319.066	0/1:109:54,55:54:1925:55:1899:-138.214,0,-140.703	0/1:17:10,7:10:360:7:244:-17.1682,0,-27.6268	0/0:217:216,1:216:7712:1:32:0,-62.1246,-690.746	0/1:155:75,79:75:2677:79:2784:-203.778,0,-194.512	0/1:71:36,35:36:1269:35:1203:-87.1524,0,-93.1284	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.332	0/1:174:72,102:72:2576:102:3561:-267.628,0,-179.698	0/1:257:92,165:92:3287:165:5767:-441.179,0,-218.68	0/1:68:32,36:32:1148:36:1262:-93.2281,0,-83.1598	0/0:76:76,0:76:2707:0:0:0,-22.8783,-243.656	0/1:44:29,15:29:1025:15:513:-33.235,0,-79.3121	0/1:23:6,17:6:216:17:600:-47.3698,0,-12.8668	0/1:143:75,68:75:2679:68:2352:-168.714,0,-198.261	0/1:97:40,57:40:1440:57:1991:-150.155,0,-100.649	0/1:148:73,75:73:2589:75:2643:-193.335,0,-188.691	0/0:203:203,0:203:7238:0:0:0,-61.1091,-650.833	0/0:230:230,0:230:8153:0:0:0,-69.2369,-733.381	0/0:98:98,0:98:3511:0:0:0,-29.5009,-316.191	0/1:23:7,16:7:248:16:559:-43.703,0,-15.7322	0/1:22:10,12:10:360:12:419:-31.4037,0,-26.117	0/0:126:126,0:126:4528:0:0:0,-37.9298,-407.628	0/0:253:252,1:252:9003:1:36:0,-72.5649,-805.807	0/1:57:28,29:28:977:29:1001:-73.0941,0,-71.0793	0/1:89:40,49:40:1421:49:1676:-124.21,0,-101.391	0/1:62:25,37:25:872:37:1289:-97.5704,0,-60.1298	0/0:124:124,0:124:4390:0:0:0,-37.3277,-395.178	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8303	0/1:90:41,49:41:1464:49:1675:-123.174,0,-104.286	0/1:91:44,47:44:1580:47:1618:-118.449,0,-115.081	0/0:73:73,0:73:2599:0:0:0,-21.9752,-234.137	0/1:142:69,73:69:2463:73:2527:-184.728,0,-179.165	0/1:77:27,50:27:968:50:1730:-132.51,0,-63.8869	0/0:130:130,0:130:4638:0:0:0,-39.1339,-417.208	0/0:116:116,0:116:4130:0:0:0,-34.9195,-371.748
chr11	2521158	.	GGG	AGA,AGG	206330	PASS	AB=0.495509,0.502495;ABP=4.06353,3.33537;AC=132,56;AF=0.702128,0.297872;AN=188;AO=6857,3027;CIGAR=1X1M1X,1X2M;DP=9909;DPB=9911;DPRA=0,1.39425;EPP=14892.8,6567.37;EPPR=9.52472;GTI=0;LEN=3,1;MEANALT=1.87234,2.22951;MQM=59.5365,56.6293;MQMR=60;NS=94;NUMALT=2;ODDS=4.78718;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=54,54;PQR=0;PRO=3;QA=241501,108187;QR=108;RO=3;RPL=6857,3026;RPP=14892.8,6567.37;RPPR=9.52472;RPR=0,1;RUN=1,1;SAF=0,0;SAP=14892.8,6576.06;SAR=6857,3027;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,20,12:0:0:20,12:716,432:-93.9528,-35.6002,-29.5796,-58.7116,0,-55.0992	1/2:84:0,39,45:0:0:39,45:1352,1616:-241.864,-132.006,-120.266,-110.21,0,-96.6636	1/2:102:0,44,58:0:0:44,58:1543,2063:-293.68,-168.13,-154.885,-125.902,0,-108.443	1/2:229:0,152,76:0:0:152,76:5292,2703:-649.878,-219.665,-173.908,-430.206,0,-407.328	1/1:74:0,73,0:0:0:73,0:2594,0:-233.341,-21.9752,0,-233.341,-21.9752,-233.341	1/1:45:0,45,0:0:0:45,0:1599,0:-144.133,-13.5464,0,-144.133,-13.5464,-144.133	1/2:108:0,53,54:0:0:53,54:1879,1923:-309.492,-156.42,-140.466,-153.145,0,-136.889	1/2:155:0,85,70:0:0:85,70:2906,2507:-440.258,-204.454,-178.867,-236.154,0,-215.082	1/2:97:0,58,39:0:0:58,39:2058,1399:-281.684,-114.096,-96.6364,-167.944,0,-156.204	1/2:112:0,49,63:0:0:49,63:1657,2252:-317.885,-183.581,-168.831,-134.65,0,-115.685	1/1:114:0,114,0:0:0:114,0:3954,0:-355.629,-34.3174,0,-355.629,-34.3174,-355.629	1/2:128:0,65,62:0:0:65,62:2273,2211:-365.011,-180.11,-160.543,-184.894,0,-166.23	1/2:99:0,47,52:0:0:47,52:1682,1856:-288.71,-151.557,-137.408,-137.51,0,-121.856	1/2:81:0,51,30:0:0:51,30:1811,1071:-235.143,-87.6264,-72.2738,-147.872,0,-138.842	1/1:84:0,83,0:0:0:83,0:2922,0:-262.957,-24.9855,0,-262.957,-24.9855,-262.957	1/1:91:0,91,0:0:0:91,0:3213,0:-289.384,-27.3937,0,-289.384,-27.3937,-289.384	1/2:44:0,22,22:0:0:22,22:770,788:-127.019,-64.3842,-57.7615,-62.988,0,-56.3653	1/1:42:0,42,0:0:0:42,0:1507,0:-135.917,-12.6433,0,-135.917,-12.6433,-135.917	1/2:55:0,25,30:0:0:25,30:891,1067:-159.847,-87.2192,-79.6935,-72.9839,0,-63.953	1/2:233:0,124,109:0:0:124,109:4419,3892:-677.051,-317.174,-279.847,-360.233,0,-327.421	1/2:139:0,71,67:0:0:71,67:2502,2377:-397.287,-193.588,-172.215,-203.771,0,-183.602	1/2:106:0,37,69:0:0:37,69:1316,2459:-307.88,-200.632,-189.494,-107.604,0,-86.8327	1/2:112:0,68,43:0:0:68,43:2388,1519:-317.907,-123.558,-103.088,-194.448,0,-181.504	1/2:42:0,27,15:0:0:27,15:972,536:-123.078,-43.7646,-35.6368,-79.6701,0,-75.1546	1/1:153:0,150,1:0:0:150,1:5220,36:-469.653,-45.1545,0,-466.717,-42.183,-466.416	1/2:365:0,175,189:0:0:175,189:6094,6763:-1046.24,-550.71,-498.03,-495.543,0,-438.648	1/1:189:0,188,0:0:0:188,0:6689,0:-601.851,-56.5936,0,-601.851,-56.5936,-601.851	1/1:30:0,30,0:0:0:30,0:1052,0:-94.9868,-9.0309,0,-94.9868,-9.0309,-94.9868	1/1:336:0,334,1:0:0:334,1:11796,36:-1061.1,-100.544,0,-1058.16,-97.5826,-1057.86	1/2:159:0,73,86:0:0:73,86:2543,3070:-456.13,-250.392,-228.417,-206.088,0,-180.2	1/1:90:0,90,0:0:0:90,0:3195,0:-287.678,-27.0927,0,-287.678,-27.0927,-287.678	1/1:11:0,11,0:0:0:11,0:393,0:-35.7108,-3.31133,0,-35.7108,-3.31133,-35.7108	1/1:42:0,42,0:0:0:42,0:1484,0:-133.72,-12.6433,0,-133.72,-12.6433,-133.72	1/1:5:0,5,0:0:0:5,0:172,0:-15.8174,-1.50515,0,-15.8174,-1.50515,-15.8174	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:54:0,54,0:0:0:54,0:1896,0:-170.905,-16.2556,0,-170.905,-16.2556,-170.905	1/2:230:0,114,116:0:0:114,116:4024,4146:-665.635,-337.962,-303.644,-328.028,0,-293.109	1/1:95:0,95,0:0:0:95,0:3329,0:-299.808,-28.5979,0,-299.808,-28.5979,-299.808	1/1:68:0,68,0:0:0:68,0:2404,0:-216.561,-20.47,0,-216.561,-20.47,-216.561	1/2:9:0,3,6:0:0:3,6:106,207:-25.7883,-17.1527,-16.2496,-8.98601,0,-7.17983	1/2:156:0,85,71:0:0:85,71:2986,2544:-449.352,-207.491,-181.903,-242.216,0,-220.843	1/1:45:0,45,0:0:0:45,0:1613,0:-145.447,-13.5464,0,-145.447,-13.5464,-145.447	1/1:147:0,145,1:0:0:145,1:5124,36:-460.791,-43.6494,0,-457.854,-40.637,-457.553	1/1:67:0,67,0:0:0:67,0:2368,0:-213.373,-20.169,0,-213.373,-20.169,-213.373	1/2:78:0,39,39:0:0:39,39:1383,1404:-227.41,-114.745,-103.004,-113.022,0,-101.282	1/2:123:0,58,65:0:0:58,65:2047,2321:-355.945,-189.299,-171.839,-167,0,-147.433	1/2:121:0,67,54:0:0:67,54:2341,1927:-347.638,-157.27,-137.101,-190.721,0,-174.465	1/1:136:0,136,0:0:0:136,0:4798,0:-431.785,-40.9401,0,-431.785,-40.9401,-431.785	1/2:81:0,46,35:0:0:46,35:1611,1260:-233.59,-103.008,-89.1607,-130.936,0,-120.4	1/2:132:0,74,58:0:0:74,58:2589,2084:-380.718,-170.228,-147.952,-210.844,0,-193.384	1/2:161:0,85,76:0:0:85,76:3007,2719:-466.143,-221.937,-196.35,-244.561,0,-221.683	1/2:17:0,10,7:0:0:10,7:350,248:-48.7429,-20.5418,-17.5315,-28.5521,0,-26.4449	1/2:94:0,52,42:0:0:52,42:1828,1512:-272.481,-123.695,-108.042,-149.142,0,-136.498	1/2:99:0,45,53:0:0:45,53:1557,1900:-281.428,-154.913,-141.366,-126.507,0,-110.553	1/1:16:0,16,0:0:0:16,0:566,0:-51.2255,-4.81648,0,-51.2255,-4.81648,-51.2255	1/2:153:1,69,83:1:36:69,83:2418,2980:-436.314,-239.969,-222.135,-193.7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chr11	2521171	.	T	C	136841	PASS	AB=0.487167;ABP=11.5934;AC=132;AF=0.702128;AN=188;AO=6735;CIGAR=1X;DP=9817;DPB=9817;DPRA=0;EPP=14627.9;EPPR=6691.15;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.5611;MQMR=56.5714;NS=94;NUMALT=1;ODDS=2.86824;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240583;QR=110517;RO=3080;RPL=6735;RPP=14627.9;RPPR=6691.15;RPR=0;RUN=1;SAF=0;SAP=14627.9;SAR=6735;SRF=0;SRP=6691.15;SRR=3080;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:13,20:13:468:20:716:-54.8029,0,-32.5166	0/1:84:45,39:45:1620:39:1392:-100.262,0,-120.625	0/1:103:59,44:59:2120:44:1580:-111.469,0,-159.422	0/1:226:77,149:77:2768:149:5305:-409.478,0,-180.289	1/1:73:0,73:0:0:73:2620:-236.033,-21.9752,0	1/1:45:0,45:0:0:45:1612:-145.262,-13.5464,0	0/1:108:54,54:54:1940:54:1929:-141.366,0,-141.685	0/1:155:72,83:72:2576:83:2964:-220.265,0,-185.028	0/1:97:39,58:39:1404:58:2076:-157.579,0,-97.0385	0/1:113:66,47:66:2372:47:1665:-116.106,0,-179.316	1/1:113:0,113:0:0:113:4013:-360.427,-34.0164,0	0/1:127:62,65:62:2224:65:2310:-169.919,0,-162.112	0/1:99:51,48:51:1828:48:1728:-125.995,0,-134.89	0/1:83:32,51:32:1152:51:1824:-139.409,0,-78.8876	1/1:81:0,81:0:0:81:2900:-261.183,-24.3834,0	1/1:89:0,89:0:0:89:3175:-285.965,-26.7917,0	0/1:44:22,22:22:784:22:784:-57.6304,0,-57.4012	1/1:42:0,42:0:0:42:1512:-136.366,-12.6433,0	0/1:57:32,25:32:1144:25:892:-63.441,0,-85.9904	0/1:235:112,123:112:4024:123:4389:-324.118,0,-291.077	0/1:140:68,72:68:2448:72:2554:-187.954,0,-178.216	0/1:108:71,37:71:2552:37:1332:-87.6702,0,-197.254	0/1:110:44,66:44:1584:66:2340:-177.697,0,-109.011	0/1:42:15,27:15:540:27:968:-74.7941,0,-35.9976	1/1:149:1,148:1:36:148:5261:-469.634,-41.2562,0	0/1:361:191,170:191:6856:170:6060:-436.782,0,-507.552	1/1:187:0,186:0:0:186:6668:-599.799,-55.9916,0	1/1:30:0,30:0:0:30:1058:-95.5285,-9.0309,0	1/1:327:1,326:1:36:326:11667:-1046.19,-94.8395,0	0/1:157:85,72:85:3048:72:2559:-182.905,0,-226.728	1/1:89:0,89:0:0:89:3182:-286.555,-26.7917,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:40:0,40:0:0:40:1440:-129.893,-12.0412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:50:0,50:0:0:50:1787:-161.111,-15.0515,0	0/1:227:117,110:117:4180:110:3904:-283.216,0,-307.679	1/1:91:0,91:0:0:91:3256:-293.242,-27.3937,0	1/1:64:0,64:0:0:64:2281:-205.519,-19.2659,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0718	0/1:154:71,83:71:2548:83:2948:-217.9,0,-182.902	1/1:45:0,45:0:0:45:1603:-144.549,-13.5464,0	1/1:143:0,143:0:0:143:5120:-460.666,-43.0473,0	1/1:66:0,66:0:0:66:2319:-208.961,-19.868,0	0/1:78:39,39:39:1404:39:1387:-101.642,0,-103.004	0/1:123:67,56:67:2404:56:2004:-143.576,0,-179.143	0/1:123:56,67:56:2001:67:2404:-179.483,0,-143.066	1/1:132:0,132:0:0:132:4726:-425.002,-39.736,0	0/1:83:37,46:37:1332:46:1622:-121.231,0,-95.0309	0/1:130:59,71:59:2124:71:2531:-188.833,0,-152.149	0/1:158:78,80:78:2785:80:2868:-210.782,0,-203.137	0/1:16:7,9:7:252:9:324:-24.4144,0,-18.1959	0/1:93:42,51:42:1512:51:1832:-137.137,0,-108.343	0/1:100:56,44:56:2016:44:1565:-111.035,0,-151.555	1/1:16:0,16:0:0:16:576:-52.1299,-4.81648,0	0/1:157:89,68:89:3204:68:2428:-171.339,0,-241.065	1/1:37:0,37:0:0:37:1324:-119.455,-11.1381,0	0/1:26:7,19:7:248:19:684:-54.0608,0,-14.8315	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4798	1/1:103:0,103:0:0:103:3684:-331.74,-31.0061,0	0/1:108:58,50:58:2088:50:1800:-129.762,0,-155.427	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.8948	1/1:221:0,221:0:0:221:7918:-712.511,-66.5276,0	0/1:161:86,75:86:3073:75:2692:-193.942,0,-227.353	0/1:74:37,37:37:1328:37:1317:-96.5453,0,-97.3935	1/1:79:0,79:0:0:79:2809:-253.039,-23.7814,0	0/1:183:108,75:108:3868:75:2684:-186.704,0,-291.768	0/1:263:171,92:171:6114:92:3296:-217.683,0,-470.441	0/1:66:35,31:35:1260:31:1116:-80.8837,0,-93.6498	1/1:78:0,78:0:0:78:2792:-251.21,-23.4803,0	0/1:46:15,31:15:540:31:1107:-86.0895,0,-35.0205	0/1:25:19,6:19:684:6:212:-11.899,0,-54.3199	0/1:145:72,73:72:2588:73:2608:-191.286,0,-188.722	0/1:99:59,40:59:2124:40:1424:-98.6117,0,-161.514	0/1:156:80,76:80:2868:76:2703:-196.11,0,-211.082	1/1:207:0,207:0:0:207:7390:-664.997,-62.3132,0	1/1:236:0,236:0:0:236:8410:-756.305,-71.0431,0	1/1:98:0,98:0:0:98:3520:-316.997,-29.5009,0	0/1:23:16,7:16:568:7:248:-15.7322,0,-44.517	0/1:24:14,10:14:504:10:360:-25.5149,0,-38.4517	1/1:135:0,135:0:0:135:4821:-433.981,-40.6391,0	1/1:250:1,249:1:36:249:8928:-799.062,-71.6618,0	0/1:58:28,30:28:1004:30:1072:-79.3095,0,-72.9873	0/1:91:51,40:51:1832:40:1440:-102.502,0,-137.568	0/1:64:38,26:38:1368:26:928:-64.5723,0,-104.066	1/1:123:0,123:0:0:123:4393:-395.535,-37.0267,0	1/1:23:0,23:0:0:23:828:-74.8303,-6.92369,0	0/1:95:52,43:52:1856:43:1530:-108.735,0,-137.919	0/1:96:49,47:49:1760:47:1662:-120.942,0,-129.675	1/1:73:0,73:0:0:73:2620:-236.025,-21.9752,0	0/1:150:81,69:81:2896:69:2476:-177.926,0,-214.489	0/1:77:51,26:51:1832:26:927:-60.1969,0,-141.638	1/1:132:0,132:0:0:132:4707:-423.134,-39.736,0	1/1:115:0,114:0:0:114:4069:-365.846,-34.3174,0
chr11	2581837	.	C	T	61553.7	PASS	AB=0.720189;ABP=1959.54;AC=58;AF=0.315217;AN=184;AO=3356;CIGAR=1X;DP=6236;DPB=6236;DPRA=1.93779;EPP=7281.79;EPPR=6202.67;GTI=22;LEN=1;MEANALT=1.01587;MQM=59.9559;MQMR=59.9823;NS=92;NUMALT=1;ODDS=0.0433336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120026;QR=102910;RO=2879;RPL=1;RPP=7281.79;RPPR=6202.67;RPR=3355;RUN=1;SAF=3356;SAP=7290.47;SAR=0;SRF=2879;SRP=6254.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:3,21:3:108:21:752:-60.7815,0,-2.85045	0/1:83:27,56:27:972:56:2012:-156.368,0,-62.8124	0/1:40:12,28:12:428:28:1008:-78.9952,0,-26.8176	0/1:142:48,94:48:1696:94:3346:-258.608,0,-110.18	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:88:25,63:25:892:63:2249:-176.181,0,-54.109	0/1:122:26,96:26:920:96:3448:-273.761,0,-46.3914	0/1:108:54,54:54:1923:54:1936:-142.005,0,-140.835	0/1:92:27,65:27:972:65:2317:-181.094,0,-60.1031	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7683	0/1:71:24,47:24:860:47:1688:-130.834,0,-56.3487	0/1:69:18,51:18:644:51:1832:-144.39,0,-37.5195	0/1:69:10,59:10:360:59:2124:-170.657,0,-11.9732	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:106:23,83:23:824:83:2978:-236.342,0,-42.5741	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:38:7,31:7:252:31:1116:-89.3116,0,-11.5898	0/1:137:54,83:54:1940:83:2966:-225.932,0,-133.635	0/1:96:26,70:26:932:70:2471:-193.74,0,-55.3	0/1:75:17,58:17:612:58:2061:-163.174,0,-32.8362	0/1:68:26,42:26:924:42:1496:-114.465,0,-63.0076	0/1:93:23,70:23:824:70:2501:-197.345,0,-46.3812	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:384:158,226:158:5652:226:8097:-613.148,0,-393.205	0/0:100:99,1:99:3523:1:36:0,-26.5047,-313.683	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:184:184,0:184:6600:0:0:0,-55.3895,-594.078	0/1:136:27,109:27:968:109:3912:-311.332,0,-46.4973	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:216:60,156:60:2148:156:5584:-437.657,0,-128.565	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:50:50,0:50:1782:0:0:0,-15.0515,-160.661	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:118:35,83:35:1244:83:2984:-233.27,0,-76.7431	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:45:43,2:43:1540:2:72:0,-6.70963,-132.056	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2648	0/1:82:27,55:27:972:55:1968:-152.71,0,-63.1134	0/1:74:14,60:14:504:60:2143:-170.86,0,-23.4219	0/1:59:19,40:19:680:40:1432:-111.417,0,-43.7684	0/0:97:95,2:95:3408:2:72:0,-22.3632,-300.097	0/1:125:49,75:49:1756:75:2677:-202.53,0,-120.783	0/1:110:24,86:24:856:86:3069:-243.324,0,-44.2478	0/1:102:23,79:23:828:79:2804:-221.894,0,-44.1391	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:90:39,51:39:1396:51:1821:-137.077,0,-98.8464	0/1:62:12,50:12:420:50:1795:-143.169,0,-19.4702	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:65:16,49:16:557:49:1726:-135.784,0,-30.8886	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:15:2,13:2:72:13:468:-37.9442,0,-2.32127	0/1:20:11,9:11:392:9:324:-23.4853,0,-29.5995	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:76:11,65:11:392:65:2321:-186.27,0,-12.7418	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:127:33,94:33:1180:94:3380:-266.184,0,-68.2772	0/1:61:15,46:15:528:46:1633:-128.894,0,-29.4885	0/0:33:32,1:32:1152:1:36:0,-6.33571,-100.392	0/1:112:22,90:22:792:90:3209:-255.31,0,-37.8903	0/1:48:6,42:6:212:42:1512:-121.925,0,-4.97536	0/1:20:2,18:2:72:18:648:-52.6313,0,-0.816122	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/1:74:16,58:16:572:58:2063:-163.662,0,-29.5372	0/1:15:3,12:3:108:12:428:-34.3434,0,-5.55972	0/1:61:13,48:13:460:48:1712:-136.003,0,-23.3725	0/1:55:19,36:19:676:36:1284:-99.3068,0,-44.6113	0/1:120:20,100:20:716:100:3588:-287.003,0,-28.6441	0/0:110:110,0:110:3928:0:0:0,-33.1133,-353.087	0/0:71:70,1:70:2508:1:36:0,-17.7749,-222.374	0/1:59:9,50:9:320:50:1792:-143.802,0,-11.3816	0/1:24:10,14:10:356:14:500:-38.1115,0,-25.1565	0/1:89:30,59:30:1076:59:2116:-163.917,0,-70.3612	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:154:154,0:154:5482:0:0:0,-46.3586,-493.507	0/1:72:17,55:17:604:55:1946:-153.738,0,-33.0164	0/1:46:11,35:11:396:35:1260:-99.8581,0,-22.1354	0/1:99:24,75:24:851:75:2669:-210.653,0,-47.1075	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:78:20,58:20:716:58:2080:-163.99,0,-41.2874	0/1:55:9,46:9:324:46:1648:-132.052,0,-12.9492	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:83:16,67:16:568:67:2404:-191.631,0,-26.4664	0/1:83:22,61:22:780:61:2188:-172.2,0,-45.5375	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:45:44,1:44:1580:1:36:0,-9.94807,-138.893
chr11	2581909	.	T	C	139902	PASS	AB=0.342804;ABP=1037.97;AC=138;AF=0.734043;AN=188;AO=6839;CIGAR=1X;DP=10050;DPB=10050;DPRA=0;EPP=14853.7;EPPR=6969.09;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.7311;MQMR=59.5748;NS=94;NUMALT=1;ODDS=1.76869;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=241605;QR=113573;RO=3208;RPL=8;RPP=14784.3;RPPR=6848.02;RPR=6831;RUN=1;SAF=8;SAP=14784.3;SAR=6831;SRF=14;SRP=6848.02;SRR=3194;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:67:44,23:44:1560:23:811:-53.0845,0,-120.507	0/1:45:36,9:36:1267:9:311:-14.7774,0,-100.76	0/1:108:47,61:47:1680:61:2153:-161.525,0,-118.697	0/1:195:129,66:129:4564:66:2348:-152.879,0,-352.206	1/1:31:1,30:1:36:30:1076:-93.4019,-5.73876,0	1/1:26:0,26:0:0:26:932:-84.179,-7.82678,0	0/1:73:47,26:47:1662:26:936:-62.5666,0,-127.885	0/1:77:64,13:64:2231:13:451:-17.7383,0,-177.103	0/1:121:69,52:69:2449:52:1847:-130.077,0,-184.217	0/1:49:39,10:39:1373:10:352:-17.2677,0,-108.973	1/1:99:0,99:0:0:99:3495:-314.756,-29.802,0	0/1:84:62,21:62:2194:21:741:-41.6666,0,-171.002	0/1:61:50,11:50:1766:11:387:-16.6724,0,-140.841	0/1:48:34,14:34:1203:14:487:-29.7098,0,-94.1149	1/1:23:0,23:0:0:23:805:-72.766,-6.92369,0	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:30:23,7:23:815:7:235:-12.4471,0,-64.6399	1/1:13:0,13:0:0:13:456:-41.3732,-3.91339,0	0/1:56:32,24:32:1115:24:846:-59.5971,0,-83.7966	0/1:140:91,49:91:3211:49:1724:-113.296,0,-246.973	0/1:151:113,38:113:3981:38:1332:-74.7156,0,-312.987	0/1:141:124,17:124:4423:17:608:-12.6068,0,-355.778	0/1:109:60,49:60:2101:49:1738:-123.868,0,-156.475	0/1:31:24,7:24:860:7:248:-13.3304,0,-68.3899	1/1:122:0,121:0:0:121:4261:-383.274,-36.4246,0	0/1:213:100,113:100:3538:113:4023:-298.138,0,-254.498	1/1:215:1,214:1:36:214:7594:-679.781,-61.1232,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:192:0,192:0:0:192:6778:-610.095,-57.7978,0	0/1:75:54,21:54:1915:21:740:-44.3461,0,-150.046	1/1:45:0,45:0:0:45:1600:-144.289,-13.5464,0	1/1:64:0,64:0:0:64:2255:-203.21,-19.2659,0	1/1:437:1,436:1:36:436:15447:-1385.66,-127.952,0	1/1:317:1,316:1:32:316:11107:-995.168,-92.2272,0	1/1:582:1,581:1:36:581:20515:-1841.96,-171.601,0	1/1:632:2,630:2:72:630:22293:-1998.33,-183.414,0	0/1:186:102,84:102:3618:84:2950:-209.743,0,-269.721	1/1:47:0,47:0:0:47:1653:-149.056,-14.1484,0	1/1:118:0,118:0:0:118:4177:-376.095,-35.5215,0	1/1:52:4,48:4:140:48:1697:-140.053,-2.70898,0	0/1:89:50,39:50:1780:39:1396:-99.1474,0,-133.648	1/1:33:0,33:0:0:33:1147:-103.531,-9.93399,0	1/1:82:0,82:0:0:82:2910:-262.044,-24.6845,0	1/1:33:0,33:0:0:33:1152:-103.977,-9.93399,0	0/1:36:20,16:20:712:16:568:-40.6146,0,-53.5687	0/1:205:161,44:161:5727:44:1555:-78.5109,0,-453.828	0/1:70:51,19:51:1791:19:659:-38.5602,0,-140.378	1/1:103:0,103:0:0:103:3638:-327.621,-31.0061,0	0/1:130:75,55:75:2680:55:1929:-134.746,0,-202.31	0/1:58:38,20:38:1329:20:708:-46.5859,0,-102.442	0/1:101:74,27:74:2589:27:960:-56.3122,0,-202.85	1/1:68:3,65:3:104:65:2284:-196.125,-10.7746,0	0/1:99:56,43:56:1996:43:1512:-106.518,0,-150.081	0/1:96:57,39:57:1993:39:1390:-96.4945,0,-150.714	1/1:207:0,207:0:0:207:7217:-649.519,-62.3132,0	0/1:134:81,53:81:2884:53:1883:-129.347,0,-219.356	1/1:23:0,23:0:0:23:818:-73.9415,-6.92369,0	1/1:92:1,91:1:36:91:3200:-284.627,-24.0965,0	1/1:339:2,337:2:72:337:11957:-1069.09,-95.2124,0	1/1:54:1,53:1:36:53:1885:-165.701,-12.6573,0	0/1:74:62,12:62:2216:12:419:-15.7661,0,-177.411	1/1:66:3,63:3:100:63:2200:-188.929,-10.5375,0	1/1:52:1,51:1:36:51:1819:-160.392,-12.0553,0	0/1:120:79,41:79:2815:41:1452:-94.8504,0,-217.463	0/1:58:41,17:41:1432:17:599:-36.7784,0,-111.193	1/1:54:0,54:0:0:54:1910:-172.176,-16.2556,0	0/1:133:87,46:87:3084:46:1627:-106.681,0,-237.744	0/1:120:90,30:90:3220:30:1076:-61.0116,0,-253.876	0/1:117:35,81:35:1217:81:2840:-220.554,0,-74.5414	1/1:20:0,20:0:0:20:708:-64.0269,-6.0206,0	0/1:38:33,5:33:1167:5:180:-5.11293,0,-93.8926	1/1:127:6,121:6:208:121:4323:-370.188,-19.179,0	0/1:174:140,34:140:4913:34:1224:-58.0006,0,-389.829	0/1:103:69,34:69:2437:34:1211:-78.2785,0,-188.56	0/1:179:130,49:130:4629:49:1710:-100.3,0,-362.823	1/1:112:0,112:0:0:112:3940:-354.722,-33.7154,0	1/1:102:0,102:0:0:102:3623:-326.241,-30.7051,0	0/1:55:45,10:45:1604:10:360:-16.1877,0,-128.013	1/1:185:8,177:8:284:177:6235:-535.155,-29.805,0	0/1:51:44,7:44:1580:7:248:-7.31166,0,-127.128	1/1:26:0,26:0:0:26:927:-83.7367,-7.82678,0	1/1:183:2,181:2:68:181:6449:-573.984,-48.6308,0	0/1:47:27,20:27:951:20:693:-48.5419,0,-71.7488	0/1:54:39,15:39:1392:15:536:-32.3015,0,-107.593	0/1:38:25,13:25:900:13:468:-31.0205,0,-69.8757	1/1:32:0,32:0:0:32:1097:-99.0336,-9.63296,0	1/1:17:0,17:0:0:17:589:-53.3309,-5.11751,0	0/1:73:55,18:55:1967:18:640:-35.949,0,-155.329	0/1:53:41,12:41:1460:12:424:-22.3128,0,-115.741	1/1:107:0,107:0:0:107:3739:-336.476,-32.2102,0	0/1:184:60,124:60:2127:124:4333:-334.75,0,-136.298	0/1:73:58,15:58:2015:15:536:-26.5637,0,-159.323	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:51:3,48:3:108:48:1694:-142.561,-5.27736,0
chr11	2581960	.	T	C	59972.5	PASS	AB=0.660499;ABP=1115.48;AC=50;AF=0.265957;AN=188;AO=3320;CIGAR=1X;DP=10326;DPB=10326;DPRA=1.13952;EPP=7212.3;EPPR=15212;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.5214;MQMR=59.7149;NS=94;NUMALT=1;ODDS=1.45091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118549;QR=248424;RO=7004;RPL=3320;RPP=7212.3;RPPR=15212;RPR=0;RUN=1;SAF=0;SAP=7212.3;SAR=3320;SRF=0;SRP=15212;SRR=7004;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:68:24,44:24:860:44:1561:-120.181,0,-57.2509	0/1:48:10,38:10:356:38:1356:-107.862,0,-17.9318	0/1:110:60,50:60:2107:50:1758:-125.133,0,-156.781	0/1:204:71,133:71:2537:133:4741:-365.411,0,-167.169	0/0:32:31,1:31:1067:1:36:0,-6.03979,-92.5804	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.179	0/1:79:26,53:26:936:53:1892:-146.753,0,-60.7781	0/1:81:16,65:16:557:65:2320:-184.146,0,-26.069	0/1:122:53,69:53:1874:69:2453:-184.28,0,-132.202	0/1:48:10,38:10:360:38:1353:-107.427,0,-18.2949	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.534	0/1:85:24,61:24:856:61:2150:-168.03,0,-51.7368	0/1:63:11,52:11:392:52:1860:-148.697,0,-16.5245	0/1:49:12,37:12:432:37:1315:-103.89,0,-24.4707	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.958	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:30:7,23:7:252:23:824:-65.4524,0,-13.9981	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6874	0/1:60:25,35:25:866:35:1256:-95.2375,0,-60.1847	0/1:144:50,94:50:1784:94:3384:-261.376,0,-117.492	0/1:162:42,120:42:1463:120:4274:-336.033,0,-83.1851	0/1:144:17,127:17:612:127:4537:-365.119,0,-12.0651	0/1:111:49,62:49:1722:62:2213:-166,0,-121.846	0/1:28:8,20:8:288:20:720:-56.6999,0,-17.8386	0/0:125:125,0:125:4424:0:0:0,-37.6287,-398.156	0/1:221:115,106:115:4052:106:3781:-273.947,0,-298.335	0/0:219:219,0:219:7680:0:0:0,-65.9256,-691.189	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:199:199,0:199:7095:0:0:0,-59.905,-638.587	0/1:79:22,57:22:788:57:2033:-159.35,0,-47.4634	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.486	0/0:68:68,0:68:2402:0:0:0,-20.47,-216.43	0/0:445:443,1:443:15709:1:36:0,-130.344,-1408.42	0/0:322:322,0:322:11435:0:0:0,-96.9317,-1027.48	0/0:603:602,1:602:21079:1:36:0,-177.923,-1892.05	0/0:643:643,0:643:22941:0:0:0,-193.562,-2063.52	0/1:186:85,101:85:3037:101:3632:-270.973,0,-217.566	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.721	0/0:126:126,0:126:4494:0:0:0,-37.9298,-404.587	0/0:54:50,4:50:1713:4:144:0,-2.942,-140.803	0/1:91:39,52:39:1377:52:1860:-139.804,0,-96.8329	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.462	0/0:84:84,0:84:2978:0:0:0,-25.2865,-268.149	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.222	0/1:35:16,19:16:557:19:676:-50.6319,0,-39.9191	0/1:209:43,166:43:1536:166:5938:-471.597,0,-75.6031	0/1:74:19,55:19:665:55:1968:-155.098,0,-37.8966	0/0:103:103,0:103:3609:0:0:0,-31.0061,-325.001	0/1:138:56,81:56:1978:81:2889:-218.644,0,-136.69	0/1:62:21,41:21:752:41:1463:-113.295,0,-49.3424	0/1:101:28,73:28:1008:73:2620:-205.641,0,-60.6323	0/0:68:65,3:65:2321:3:108:0,-10.4131,-199.091	0/1:102:43,59:43:1544:59:2120:-160.322,0,-108.437	0/1:98:41,57:41:1472:57:2024:-152.929,0,-103.257	0/0:215:215,0:215:7645:0:0:0,-64.7214,-687.98	0/1:145:53,92:53:1855:92:3293:-252.835,0,-123.512	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.4079	0/0:93:92,1:92:3281:1:36:0,-24.3975,-291.897	0/0:354:351,3:351:12452:3:108:0,-96.5126,-1110.34	0/0:51:51,0:51:1798:0:0:0,-15.3525,-161.907	0/1:73:11,62:11:396:62:2202:-176.445,0,-14.0072	0/0:66:63,3:63:2245:3:104:0,-10.1652,-192.573	0/0:51:50,1:50:1777:1:36:0,-11.7543,-156.612	0/1:127:44,83:44:1561:83:2957:-228.125,0,-102.549	0/1:60:17,43:17:612:43:1536:-120.001,0,-37.3516	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.975	0/1:132:46,86:46:1618:86:3073:-237.054,0,-106.168	0/1:122:29,93:29:1029:93:3336:-263.691,0,-56.1955	0/1:118:82,36:82:2943:36:1296:-81.4117,0,-229.573	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3485	0/1:40:5,35:5:176:35:1252:-100.939,0,-4.14382	0/0:129:123,6:123:4363:6:216:0,-19.0602,-372.839	0/1:179:35,144:35:1241:144:5137:-407.601,0,-58.1042	0/1:110:36,74:36:1262:74:2656:-206.132,0,-80.7542	0/1:183:49,134:49:1726:134:4756:-373.013,0,-100.532	0/0:112:112,0:112:3964:0:0:0,-33.7154,-356.877	0/0:106:106,0:106:3793:0:0:0,-31.9092,-341.461	0/1:61:10,51:10:360:51:1809:-144.479,0,-14.3815	0/0:188:179,9:179:6302:9:324:0,-27.1622,-537.545	0/1:55:9,46:9:324:46:1640:-131.321,0,-12.9492	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3104	0/0:187:187,0:187:6615:0:0:0,-56.2926,-595.364	0/1:48:20,28:20:716:28:993:-75.226,0,-50.3167	0/1:56:13,43:13:468:43:1548:-121.008,0,-25.602	0/1:38:13,25:13:464:25:870:-67.1667,0,-30.6584	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4111	0/1:74:18,56:18:648:56:2012:-159.077,0,-36.3678	0/1:56:13,43:13:464:43:1544:-122.395,0,-25.011	0/0:110:110,0:110:3926:0:0:0,-33.1133,-353.41	0/1:187:125,62:125:4457:62:2224:-144.121,0,-344.996	0/1:76:16,60:16:572:60:2156:-171.106,0,-28.8992	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:52:49,3:49:1749:3:104:0,-5.95075,-147.881
chr11	2747875	.	C	T	178923	PASS	AB=0.481939;ABP=21.1294;AC=133;AF=0.707447;AN=188;AO=6862;CIGAR=1X;DP=10188;DPB=10188;DPRA=0;EPP=14895;EPPR=7218.81;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.9408;MQMR=59.9783;NS=94;NUMALT=1;ODDS=1.67627;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244936;QR=117604;RO=3323;RPL=3891;RPP=270.853;RPPR=393.476;RPR=2971;RUN=1;SAF=3892;SAP=272.018;SAR=2970;SRF=2048;SRP=393.476;SRR=1275;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:59:26,33:26:917:33:1171:-87.9359,0,-65.0838	0/1:145:71,74:71:2510:74:2664:-196.356,0,-182.503	0/1:139:69,70:69:2431:70:2492:-182.68,0,-177.203	0/1:186:91,95:91:3190:95:3399:-250.086,0,-231.331	1/1:44:0,44:0:0:44:1580:-142.491,-13.2453,0	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	0/1:110:48,62:48:1693:62:2224:-167.311,0,-119.541	0/1:174:109,65:109:3852:65:2316:-156.322,0,-294.499	0/1:122:60,62:60:2133:62:2232:-164.418,0,-155.511	0/1:119:65,54:65:2336:54:1931:-138.226,0,-174.677	1/1:128:0,128:0:0:128:4588:-413.084,-38.5318,0	0/1:195:102,93:102:3617:93:3312:-239.599,0,-267.036	0/1:171:93,78:93:3305:78:2778:-198.757,0,-246.193	0/1:164:95,69:95:3342:69:2471:-173.275,0,-251.629	1/1:124:0,124:0:0:124:4432:-398.982,-37.3277,0	1/1:124:1,123:1:36:123:4392:-391.853,-33.7294,0	0/1:118:61,57:61:2143:57:2030:-147.437,0,-157.613	1/1:131:1,130:1:36:130:4633:-413.533,-35.8367,0	0/1:68:44,24:44:1571:24:847:-56.0787,0,-121.211	0/1:113:56,57:56:2008:57:2048:-150.575,0,-146.977	0/1:156:76,80:76:2707:80:2840:-208.872,0,-196.913	0/1:62:41,21:41:1464:21:756:-49.7034,0,-113.392	0/1:65:33,32:33:1167:32:1152:-84.4232,0,-85.7695	0/1:107:63,44:63:2226:44:1556:-108.12,0,-168.391	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:190:92,98:92:3228:98:3493:-257.385,0,-233.354	1/1:188:0,188:0:0:188:6748:-607.392,-56.5936,0	1/1:66:0,66:0:0:66:2354:-212.114,-19.868,0	1/1:251:2,249:2:72:249:8865:-790.999,-68.7218,0	0/1:60:30,30:30:1068:30:1080:-79.4515,0,-78.3703	1/1:91:0,91:0:0:91:3249:-292.631,-27.3937,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:289:163,126:163:5723:126:4520:-319.896,0,-428.195	1/1:84:0,84:0:0:84:2986:-268.968,-25.2865,0	1/1:92:0,92:0:0:92:3279:-295.302,-27.6948,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:152:65,87:65:2323:87:3117:-234.998,0,-163.573	1/1:77:1,76:1:36:76:2717:-241.172,-19.581,0	1/1:167:0,167:0:0:167:5970:-537.406,-50.272,0	1/1:141:0,141:0:0:141:5021:-452.025,-42.4452,0	0/1:133:80,53:80:2856:53:1890:-130.34,0,-217.241	0/1:105:61,44:61:2148:44:1572:-110.155,0,-161.978	0/1:120:63,57:63:2252:57:2030:-146.836,0,-166.82	1/1:107:1,106:1:36:106:3783:-337.07,-28.6119,0	0/1:91:39,52:39:1395:52:1860:-140.286,0,-98.4546	0/1:158:85,73:85:3017:73:2582:-185.065,0,-224.198	0/1:76:35,41:35:1235:41:1459:-108.709,0,-88.5752	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:215:87,128:87:3081:128:4575:-347.193,0,-212.797	0/1:34:20,14:20:707:14:500:-35.1012,0,-53.7196	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	0/1:136:60,76:60:2128:76:2701:-202.394,0,-150.846	1/1:63:1,62:1:36:62:2207:-195.296,-15.3666,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	1/1:52:0,52:0:0:52:1831:-165.067,-15.6536,0	0/1:164:85,79:85:3008:79:2819:-204.58,0,-221.582	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:103:1,102:1:36:102:3656:-325.645,-27.4078,0	0/1:153:83,70:83:2938:70:2503:-179.464,0,-218.598	0/1:83:43,40:43:1527:40:1427:-103.741,0,-112.737	1/1:91:1,90:1:36:90:3196:-284.264,-23.7955,0	0/1:138:73,65:73:2608:65:2300:-165.715,0,-193.426	0/1:83:66,17:66:2325:17:605:-29.2992,0,-184.524	0/1:84:39,43:39:1350:43:1535:-113.462,0,-96.7507	1/1:86:0,86:0:0:86:3067:-276.259,-25.8886,0	0/1:173:95,78:95:3344:78:2782:-198.541,0,-249.101	0/1:27:19,8:19:667:8:288:-18.1396,0,-52.2268	0/1:73:38,35:38:1335:35:1222:-88.3043,0,-98.4712	0/1:95:51,44:51:1832:44:1575:-113.443,0,-136.563	0/1:154:65,89:65:2287:89:3168:-238.855,0,-159.713	1/1:158:1,157:1:36:157:5625:-502.77,-43.9645,0	1/1:120:0,120:0:0:120:4270:-384.448,-36.1236,0	0/1:151:80,70:80:2847:70:2501:-179.927,0,-211.083	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	0/1:130:60,70:60:2143:70:2507:-186.748,0,-154.003	1/1:144:0,144:0:0:144:5115:-460.492,-43.3483,0	1/1:189:0,189:0:0:189:6749:-606.857,-56.8947,0	0/1:115:53,62:53:1884:62:2219:-165.355,0,-135.22	0/1:146:74,72:74:2573:72:2579:-188.408,0,-187.866	1/1:156:0,156:0:0:156:5571:-501.512,-46.9607,0	1/1:235:1,234:1:21:234:8325:-747.158,-68.6421,0	1/1:51:0,51:0:0:51:1812:-163.359,-15.3525,0	0/1:120:51,69:51:1809:69:2472:-186.61,0,-126.966	0/1:160:83,77:83:2932:77:2760:-200.473,0,-215.95	1/1:109:0,109:0:0:109:3886:-349.932,-32.8123,0	0/1:145:69,76:69:2415:76:2720:-201.392,0,-173.956	0/1:117:80,37:80:2834:37:1328:-84.6017,0,-220.079	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:192:2,190:2:72:190:6773:-602.805,-50.961,0
chr11	2784453	.	T	C	63020.9	PASS	AB=0.482137;ABP=11.9316;AC=132;AF=0.702128;AN=188;AO=3168;CIGAR=1X;DP=4847;DPB=4847;DPRA=8.67563;EPP=6882.23;EPPR=3640.23;GTI=3;LEN=1;MEANALT=1.04301;MQM=59.9953;MQMR=59.9928;NS=94;NUMALT=1;ODDS=0.0649037;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113424;QR=59993;RO=1675;RPL=0;RPP=6882.23;RPPR=3640.23;RPR=3168;RUN=1;SAF=3168;SAP=6882.23;SAR=0;SRF=1675;SRP=3640.23;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:31,19:31:1107:19:680:-46.4777,0,-84.8887	0/1:44:30,14:30:1076:14:504:-32.4528,0,-83.9075	0/1:109:55,54:55:1972:54:1936:-141.704,0,-144.943	0/1:98:53,45:53:1900:45:1612:-115.869,0,-141.777	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:51:33,18:33:1188:18:644:-42.9381,0,-91.8761	0/1:68:38,30:38:1353:30:1080:-77.0432,0,-101.598	0/1:55:26,29:26:921:29:1031:-76.546,0,-66.6486	0/1:66:32,34:32:1148:34:1216:-89.8786,0,-83.7619	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:63:25,38:25:900:38:1364:-104.096,0,-62.3561	0/1:37:20,17:20:716:17:612:-44.2753,0,-53.6296	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:26:10,16:10:356:16:576:-44.3482,0,-24.5545	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	0/1:89:63,25:63:2241:25:900:-54.6146,0,-175.232	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5887	0/1:63:27,36:27:968:36:1288:-97.2581,0,-68.4725	0/1:34:29,5:29:1044:5:180:-6.31705,0,-84.0398	1/1:24:1,23:1:36:23:820:-70.5242,-3.62645,0	0/1:182:101,81:101:3632:81:2887:-205.279,0,-272.296	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	0/1:80:28,52:28:1004:52:1864:-143.957,0,-66.5935	1/1:82:0,82:0:0:82:2929:-263.845,-24.6845,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:9:0,8:0:0:8:284:-25.5441,-2.40824,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:18:0,17:0:0:17:612:-55.0536,-5.11751,0	0/1:128:58,70:58:2084:70:2516:-188.16,0,-149.298	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	1/1:26:0,26:0:0:26:918:-82.9353,-7.82678,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:88:33,55:33:1184:55:1964:-150.543,0,-80.3777	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:47:0,47:0:0:47:1668:-150.407,-14.1484,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:31:14,17:14:504:17:608:-45.7201,0,-36.3662	0/1:74:42,32:42:1508:32:1152:-81.7139,0,-113.738	0/1:54:16,38:16:564:38:1364:-106.805,0,-34.8343	1/1:126:2,124:2:72:124:4439:-392.843,-31.0931,0	0/1:75:33,42:33:1176:42:1508:-113.437,0,-83.5705	0/1:61:26,35:26:936:35:1260:-95.3427,0,-66.1966	0/1:68:53,15:53:1900:15:540:-28.4665,0,-150.808	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:83:33,50:33:1169:50:1792:-136.577,0,-80.5298	0/1:35:16,19:16:572:19:684:-51.3543,0,-41.2774	1/1:4:0,4:0:0:4:143:-13.2214,-1.20412,0	0/1:104:55,49:55:1980:49:1764:-127.737,0,-147.167	1/1:31:0,31:0:0:31:1106:-99.8509,-9.33193,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:64:34,30:34:1220:30:1080:-78.2473,0,-90.8409	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	0/1:150:79,71:79:2840:71:2528:-182.618,0,-210.683	0/1:45:28,16:28:1008:16:572:-38.3494,0,-77.5759	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	0/1:70:40,30:40:1432:30:1068:-75.36,0,-108.105	0/1:127:82,45:82:2917:45:1604:-106.418,0,-224.534	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:31:15,16:15:525:16:576:-42.8431,0,-38.2461	0/1:28:15,13:15:540:13:460:-33.3065,0,-40.5077	0/1:103:43,60:43:1548:60:2156:-163.301,0,-108.607	0/1:87:45,42:45:1603:42:1504:-109.465,0,-118.37	0/1:87:70,17:70:2501:17:593:-27.506,0,-199.151	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:85:35,50:35:1256:50:1796:-136.335,0,-87.7577	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:50:22,28:22:792:28:1008:-75.9849,0,-56.5542	1/1:59:1,58:1:32:58:2084:-184.631,-14.5615,0	1/1:109:0,109:0:0:109:3867:-348.224,-32.8123,0	0/1:45:23,22:23:820:22:779:-56.8857,0,-60.5762	0/1:22:7,15:7:252:15:540:-42.3139,0,-16.4063	1/1:31:0,31:0:0:31:1103:-99.5798,-9.33193,0	1/1:64:0,64:0:0:64:2304:-207.603,-19.2659,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:51:22,29:22:792:29:1031:-77.7501,0,-56.2531	0/1:48:19,29:19:684:29:1044:-79.8254,0,-47.4409	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:59:26,33:26:936:33:1184:-89.1075,0,-66.7987	0/1:20:11,9:11:396:9:320:-23.1218,0,-29.9621	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0
chr11	2784459	.	C	G	27834.6	PASS	AB=0.515218;ABP=9.42115;AC=56;AF=0.297872;AN=188;AO=1650;CIGAR=1X;DP=4804;DPB=4804;DPRA=1.39304;EPP=3577.26;EPPR=6817.12;GTI=2;LEN=1;MEANALT=1.03509;MQM=59.9903;MQMR=59.9987;NS=94;NUMALT=1;ODDS=0.205304;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58968;QR=112702;RO=3150;RPL=1;RPP=3577.26;RPPR=6817.12;RPR=1649;RUN=1;SAF=1650;SAP=3585.94;SAR=0;SRF=3150;SRP=6843.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:19,29:19:680:29:1040:-79.4649,0,-47.0797	0/1:43:14,29:14:496:29:1040:-80.9701,0,-32.03	0/1:107:54,53:54:1940:53:1893:-138.436,0,-142.666	0/1:97:45,52:45:1608:52:1860:-138.48,0,-115.81	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9546	0/1:51:18,33:18:644:33:1169:-90.1628,0,-42.9381	0/1:69:31,38:31:1103:38:1368:-102.65,0,-78.8087	0/1:54:28,26:28:1000:26:936:-68.3038,0,-74.0598	0/1:66:35,31:35:1233:31:1116:-80.8837,0,-91.4041	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:62:38,24:38:1360:24:864:-59.4187,0,-104.037	0/1:37:17,20:17:612:20:712:-53.2685,0,-44.2753	0/1:31:13,18:13:464:18:640:-48.5974,0,-32.7656	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:25:15,10:15:540:10:360:-25.2186,0,-41.4108	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:12:5,7:5:180:7:237:-18.0467,0,-12.9397	0/1:26:15,11:15:540:11:396:-28.156,0,-41.1098	0/1:87:25,62:25:891:62:2217:-173.603,0,-54.3192	0/1:24:8,16:8:288:16:568:-44.2271,0,-19.0427	0/1:63:36,27:36:1296:27:972:-68.833,0,-97.979	0/1:32:4,28:4:140:28:1004:-81.0429,0,-3.31162	0/0:25:24,1:24:860:1:36:0,-3.92747,-74.1236	0/1:179:81,98:81:2891:98:3490:-260.424,0,-206.542	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/1:79:51,28:51:1832:28:1008:-67.255,0,-141.379	0/0:79:79,0:79:2825:0:0:0,-23.7814,-254.487	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:127:69,58:69:2467:58:2088:-149.959,0,-184.053	0/0:77:75,0:75:2684:0:0:0,-22.5772,-241.445	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:86:54,32:54:1936:32:1148:-77.7413,0,-148.628	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.0815	0/1:74:32,42:32:1152:42:1508:-113.738,0,-81.7139	0/1:54:38,16:38:1368:16:561:-34.5615,0,-107.165	0/0:126:126,0:126:4498:0:0:0,-37.9298,-404.986	0/1:72:40,32:40:1436:32:1148:-81.9557,0,-107.864	0/1:62:35,27:35:1252:27:961:-68.1414,0,-94.3212	0/1:67:14,53:14:504:53:1900:-151.109,0,-25.5291	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:81:48,33:48:1710:33:1176:-81.7643,0,-129.801	0/1:37:21,16:21:741:16:572:-40.6753,0,-55.8735	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:99:48,51:48:1716:51:1821:-134.367,0,-124.924	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:66:32,34:32:1144:34:1224:-90.5991,0,-83.4015	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/1:151:72,79:72:2568:79:2818:-208.401,0,-185.915	0/1:45:16,29:16:567:29:1040:-80.368,0,-37.8144	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:69:29,40:29:1023:40:1424:-107.686,0,-71.6107	0/1:126:44,82:44:1572:82:2929:-225.913,0,-103.842	0/1:10:4,5:4:144:5:180:-13.483,0,-10.2445	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:32:17,15:17:603:15:525:-37.9451,0,-44.9665	0/1:28:13,15:13:468:15:525:-39.1492,0,-34.0308	0/1:103:60,42:60:2143:42:1512:-105.456,0,-162.22	0/1:86:42,44:42:1500:44:1564:-115.162,0,-109.406	0/1:85:15,70:15:540:70:2505:-200.113,0,-23.349	0/0:79:79,0:79:2835:0:0:0,-23.7814,-255.387	0/0:70:70,0:70:2477:0:0:0,-21.0721,-223.183	0/1:82:48,34:48:1724:34:1205:-84.0694,0,-130.761	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:50:30,20:30:1062:20:720:-50.0773,0,-80.8385	0/0:59:58,1:58:2071:1:36:0,-14.1625,-183.062	0/0:106:106,0:106:3782:0:0:0,-31.9092,-340.579	0/1:43:22,21:22:788:21:741:-54.0673,0,-58.3005	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:51:29,22:29:1040:22:792:-56.2531,0,-78.5618	0/1:48:30,18:30:1076:18:642:-43.6603,0,-82.7034	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:60:33,27:33:1180:27:964:-69.015,0,-88.4462	0/1:20:9,11:9:324:11:377:-28.2373,0,-23.4853	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395
chr11	2941313	.	GCCAACG	GCCGACG,ACCGACA	148234	PASS	AB=0.495203,0.498401;ABP=3.88524,3.10752;AC=137,51;AF=0.728723,0.271277;AN=188;AO=5244,2186;CIGAR=3M1X3M,1X2M1X2M1X;DP=7487;DPB=7486.86;DPRA=0,1.3034;EPP=11071.1,4637.6;EPPR=9.52472;GTI=1;LEN=1,7;MEANALT=2.10638,2.58182;MQM=56.8036,34.2758;MQMR=60;NS=94;NUMALT=2;ODDS=0.442123;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=186962,76514;QR=103;RO=3;RPL=36,13;RPP=11079.7,4637.6;RPPR=9.52472;RPR=5208,2173;RUN=1,1;SAF=5243,2186;SAP=11381.5,4749.85;SAR=1,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,9,18:0:0:9,18:320,631:-60.7092,-34.6337,-31.9244,-26.394,0,-20.9755	1/2:92:0,54,38:0:0:54,38:1920,1346:-229.89,-73.5838,-57.3282,-156.599,0,-145.159	1/2:46:0,23,22:0:0:23,22:812,780:-108.102,-42.0193,-35.0956,-66.0417,0,-59.419	1/2:155:0,64,91:0:0:64,91:2288,3171:-435.732,-249.165,-229.899,-186.916,0,-159.522	1/1:58:0,55,0:0:0:55,0:1968,0:-176.674,-16.5567,0,-176.674,-16.5567,-176.674	1/1:44:0,44,0:0:0:44,0:1567,0:-141.129,-13.2453,0,-141.129,-13.2453,-141.129	1/2:63:0,29,34:0:0:29,34:1040,1198:-179.586,-94.7592,-86.0293,-85.1775,0,-74.9425	1/2:185:0,98,87:0:0:98,87:3478,3048:-450.881,-168.233,-138.732,-282.947,0,-256.757	1/2:62:0,28,34:0:0:28,34:991,1186:-146.013,-65.3541,-56.9253,-80.9635,0,-70.7284	1/2:58:0,32,25:0:0:32,25:1144,877:-161.888,-68.6008,-58.9679,-93.3517,0,-85.8259	1/1:83:0,82,0:0:0:82,0:2928,0:-263.378,-24.6845,0,-263.378,-24.6845,-263.378	1/2:69:0,46,23:0:0:46,23:1640,810:-177.833,-44.5797,-30.7324,-133.536,0,-126.613	1/2:69:0,32,36:0:0:32,36:1148,1268:-162.816,-69.2721,-59.6392,-93.5093,0,-82.6723	1/1:67:0,66,0:0:0:66,0:2364,0:-211.996,-19.868,0,-211.996,-19.868,-211.996	1/1:50:0,49,0:0:0:49,0:1752,0:-157.6,-14.7505,0,-157.6,-14.7505,-157.6	1/1:62:0,62,0:0:0:62,0:2228,0:-200.264,-18.6639,0,-200.264,-18.6639,-200.264	1/2:68:0,36,31:0:0:36,31:1280,1094:-163.334,-59.2728,-48.4358,-104.109,0,-94.7768	1/1:71:0,70,0:0:0:70,0:2500,0:-224.456,-21.0721,0,-224.456,-21.0721,-224.456	1/2:44:0,18,26:0:0:18,26:644,922:-102.497,-50.0169,-44.5983,-52.7918,0,-44.965	1/2:111:0,54,57:0:0:54,57:1940,1994:-313.395,-155.127,-138.871,-158.616,0,-141.457	1/1:100:0,97,1:0:0:97,1:3468,36:-311.642,-29.1999,0,-309.724,-27.2889,-309.423	1/2:64:0,21,43:0:0:21,43:747,1512:-180.88,-119.999,-113.677,-61.2327,0,-48.2884	1/2:79:0,32,47:0:0:32,47:1140,1621:-219.215,-126.289,-116.657,-93.2716,0,-79.1231	1/2:86:0,48,38:0:0:48,38:1708,1337:-211.598,-72.848,-58.3986,-139.043,0,-127.604	1/1:60:0,60,0:0:0:60,0:2152,0:-193.627,-18.0618,0,-193.627,-18.0618,-193.627	1/2:289:0,139,148:0:0:139,148:4948,5227:-819.287,-416.013,-374.17,-403.292,0,-358.74	1/1:105:0,105,0:0:0:105,0:3730,0:-335.101,-31.6082,0,-335.101,-31.6082,-335.101	1/1:46:0,46,0:0:0:46,0:1639,0:-147.503,-13.8474,0,-147.503,-13.8474,-147.503	1/1:167:0,166,0:0:0:166,0:5896,0:-530.382,-49.971,0,-530.382,-49.971,-530.382	1/2:168:0,82,84:0:0:82,84:2932,2884:-400.416,-161.944,-137.259,-238.552,0,-213.266	1/1:99:0,98,0:0:0:98,0:3495,0:-314.416,-29.5009,0,-314.416,-29.5009,-314.416	1/1:1:0,1,0:0:0:1,0:36,0:-3.59317,-0.30103,0,-3.59317,-0.30103,-3.59317	1/1:7:0,7,0:0:0:7,0:252,0:-22.845,-2.10721,0,-22.845,-2.10721,-22.845	1/1:7:0,7,0:0:0:7,0:252,0:-23.0052,-2.10721,0,-23.0052,-2.10721,-23.0052	1/1:8:0,8,0:0:0:8,0:288,0:-26.2302,-2.40824,0,-26.2302,-2.40824,-26.2302	1/1:6:0,6,0:0:0:6,0:212,0:-19.3995,-1.80618,0,-19.3995,-1.80618,-19.3995	1/2:168:0,95,71:0:0:95,71:3388,2479:-471.219,-195.032,-166.434,-276.189,0,-254.816	1/1:145:0,145,0:0:0:145,0:5153,0:-462.996,-43.6494,0,-462.996,-43.6494,-462.996	1/1:71:0,71,0:0:0:71,0:2541,0:-228.191,-21.3731,0,-228.191,-21.3731,-228.191	1/1:1:0,1,0:0:0:1,0:36,0:-3.59317,-0.30103,0,-3.59317,-0.30103,-3.59317	1/2:117:0,62,55:0:0:62,55:2215,1923:-286.223,-105.858,-87.1944,-180.663,0,-164.106	1/1:48:1,47,0:1:36:47,0:1688,0:-147.995,-10.8512,0,-148.296,-14.1484,-151.234	1/1:133:0,132,0:0:0:132,0:4716,0:-423.12,-39.736,0,-423.12,-39.736,-423.12	1/1:69:0,68,0:0:0:68,0:2444,0:-219.833,-20.47,0,-219.833,-20.47,-219.833	1/2:44:0,17,27:0:0:17,27:608,958:-124.218,-74.6385,-69.521,-49.9298,0,-41.802	1/2:45:0,22,22:0:0:22,22:784,773:-125.458,-61.5464,-54.9238,-63.9536,0,-57.3309	1/2:110:0,61,47:0:0:61,47:2176,1623:-268.234,-91.2374,-72.8746,-176.953,0,-162.804	1/1:133:0,131,1:0:0:131,1:4645,32:-417.867,-39.4349,0,-415.325,-36.9152,-415.024	1/2:87:0,47,40:0:0:47,40:1676,1395:-245.756,-109.123,-94.9746,-136.978,0,-124.937	1/2:208:0,90,116:0:0:90,116:3220,4052:-579.519,-316.947,-289.854,-262.636,0,-227.717	1/1:143:0,143,0:0:0:143,0:5091,0:-458.333,-43.0473,0,-458.333,-43.0473,-458.333	1/2:8:0,5,3:0:0:5,3:180,104:-23.2836,-8.58334,-7.07819,-15.0469,0,-14.1438	1/1:102:0,102,0:0:0:102,0:3657,0:-328.602,-30.7051,0,-328.602,-30.7051,-328.602	1/2:53:0,18,35:0:0:18,35:639,1225:-149.355,-97.2856,-91.867,-52.4197,0,-41.8837	1/1:12:0,12,0:0:0:12,0:428,0:-38.806,-3.61236,0,-38.806,-3.61236,-38.806	1/2:55:0,36,19:0:0:36,19:1240,652:-137.873,-37.4019,-26.5649,-100.754,0,-95.0343	1/1:6:0,6,0:0:0:6,0:212,0:-19.4224,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chr11	2941370	.	AGGCGGC	GGATGGC,GGGCGGC	131734	PASS	AB=0.492937,0.496685;ABP=4.51324,3.34144;AC=133,53;AF=0.715054,0.284946;AN=186;AO=4219,1745;CIGAR=1X1M2X3M,1X6M;DP=6031;DPB=6031;DPRA=18.9137,1.42769;EPP=7190.73,3200.62;EPPR=0;GTI=1;LEN=7,1;MEANALT=2.20879,2.72222;MQM=59.5342,59.9731;MQMR=0;NS=93;NUMALT=2;ODDS=1.6049;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=145576,61399;QR=0;RO=0;RPL=241,71;RPP=7190.73,3200.62;RPPR=0;RPR=3978,1674;RUN=1,1;SAF=0,0;SAP=9164.45,3792.23;SAR=4219,1745;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:53:0,28,24:0:0:28,24:919,847:-143.187,-68.9645,-60.5356,-74.2052,0,-66.9805	1/2:26:0,8,14:0:0:8,14:273,491:-62.1599,-40.0067,-37.5985,-22.1887,0,-17.9743	1/2:127:0,61,66:0:0:61,66:2092,2351:-361.815,-191.981,-173.618,-170.183,0,-150.315	1/2:176:0,102,73:0:0:102,73:3559,2582:-499.754,-210.295,-179.589,-289.451,0,-267.476	1/1:43:0,43,0:0:0:43,0:1470,0:-132.435,-12.9443,0,-132.435,-12.9443,-132.435	1/1:46:0,46,0:0:0:46,0:1605,0:-144.086,-13.8474,0,-144.086,-13.8474,-144.086	1/2:93:0,43,48:0:0:43,48:1520,1697:-262.01,-138.214,-125.27,-123.799,0,-109.349	1/2:103:0,57,46:0:0:57,46:2008,1614:-295.123,-131.7,-114.542,-163.774,0,-149.927	1/2:94:0,47,47:0:0:47,47:1611,1670:-267.21,-136.438,-122.29,-131.12,0,-116.972	1/2:92:0,49,43:0:0:49,43:1679,1462:-255.217,-118.919,-104.169,-136.639,0,-123.695	1/1:25:0,25,0:0:0:25,0:848,0:-76.6302,-7.52575,0,-76.6302,-7.52575,-76.6302	1/2:66:0,32,34:0:0:32,34:1079,1189:-184.241,-97.0779,-87.445,-87.5059,0,-77.2709	1/2:56:0,36,20:0:0:36,20:1220,707:-156.845,-57.934,-47.0969,-99.2589,0,-93.2383	1/1:35:0,35,0:0:0:35,0:1195,0:-107.85,-10.5361,0,-107.85,-10.5361,-107.85	1/1:68:0,67,0:0:0:67,0:2323,0:-208.971,-20.169,0,-208.971,-20.169,-208.971	1/1:40:0,40,0:0:0:40,0:1362,0:-122.874,-12.0412,0,-122.874,-12.0412,-122.874	1/2:19:0,8,11:0:0:8,11:257,387:-52.5571,-31.8546,-29.4464,-21.0365,0,-17.7252	1/1:35:0,35,0:0:0:35,0:1194,0:-107.76,-10.5361,0,-107.76,-10.5361,-107.76	1/2:23:0,13,10:0:0:13,10:452,357:-66.2066,-29.4618,-25.5484,-37.0976,0,-34.0873	1/2:158:0,71,85:0:0:71,85:2455,2968:-440.726,-241.411,-220.037,-199.308,0,-173.72	1/1:98:0,97,0:0:0:97,0:3301,0:-297.007,-29.1999,0,-297.007,-29.1999,-297.007	1/2:90:0,24,64:0:0:24,64:845,2275:-254.181,-185.391,-178.166,-68.7879,0,-49.522	1/2:105:0,62,39:0:0:62,39:2135,1372:-284.522,-111.45,-92.7857,-173.104,0,-161.364	1/2:40:0,22,17:0:0:22,17:766,599:-111.067,-48.78,-42.1573,-62.2964,0,-57.1789	1/1:92:0,91,1:0:0:91,1:3107,36:-279.442,-27.3937,0,-276.505,-24.0965,-276.204	1/2:192:0,97,91:0:0:97,91:3297,3224:-530.086,-262.677,-233.477,-267.444,0,-240.05	1/1:169:0,164,1:0:0:164,1:5566,27:-500.736,-49.3689,0,-498.607,-47.2461,-498.306	1/1:48:0,48,0:0:0:48,0:1682,0:-151.666,-14.4494,0,-151.666,-14.4494,-151.666	1/1:202:0,197,0:0:0:197,0:6833,0:-614.73,-59.3029,0,-614.73,-59.3029,-614.73	1/2:75:0,43,30:0:0:43,30:1441,1030:-200.33,-83.6381,-70.6938,-116.701,0,-107.67	1/1:99:0,98,0:0:0:98,0:3354,0:-301.585,-29.5009,0,-301.585,-29.5009,-301.585	1/1:4:0,4,0:0:0:4,0:137,0:-12.6674,-1.20412,0,-12.6674,-1.20412,-12.6674	1/1:10:0,10,0:0:0:10,0:347,0:-31.5587,-3.0103,0,-31.5587,-3.0103,-31.5587	1/1:1:0,1,0:0:0:1,0:36,0:-3.58923,-0.30103,0,-3.58923,-0.30103,-3.58923	1/1:9:0,9,0:0:0:9,0:307,0:-27.9541,-2.70927,0,-27.9541,-2.70927,-27.9541	1/1:7:0,6,0:0:0:6,0:204,0:-18.3358,-1.80618,0,-18.3358,-1.80618,-18.3358	1/2:137:0,60,73:0:0:60,73:2092,2532:-375.979,-205.838,-187.776,-170.173,0,-148.198	1/1:32:0,32,0:0:0:32,0:1116,0:-100.665,-9.63296,0,-100.665,-9.63296,-100.665	1/1:31:0,31,0:0:0:31,0:1070,0:-96.6057,-9.33193,0,-96.6057,-9.33193,-96.6057	.:.:.:.:.:.:.:.	1/2:109:0,55,53:0:0:55,53:1929,1847:-307.207,-150.231,-133.675,-157.005,0,-141.05	1/1:12:0,12,0:0:0:12,0:414,0:-37.5903,-3.61236,0,-37.5903,-3.61236,-37.5903	1/1:111:0,109,0:0:0:109,0:3780,0:-339.754,-32.8123,0,-339.754,-32.8123,-339.754	1/1:63:0,63,0:0:0:63,0:2172,0:-195.746,-18.9649,0,-195.746,-18.9649,-195.746	1/2:39:0,25,14:0:0:25,14:858,495:-110.326,-40.6686,-33.1429,-70.0075,0,-65.7931	1/2:88:0,33,53:0:0:33,53:1150,1837:-242.813,-149.29,-139.356,-93.5114,0,-77.5568	1/2:57:0,34,23:0:0:34,23:1162,824:-161.781,-67.5596,-57.3246,-94.5732,0,-87.6495	1/1:145:0,142,2:0:0:142,2:4939,72:-444.293,-42.7463,0,-438.418,-36.8581,-437.816	1/2:75:0,41,33:0:0:41,33:1419,1175:-211.105,-95.8505,-83.5082,-115.333,0,-105.399	1/2:70:0,36,34:0:0:36,34:1263,1201:-200.94,-98.1586,-87.3216,-103.134,0,-92.8986	1/1:96:0,96,0:0:0:96,0:3367,0:-303.247,-28.8989,0,-303.247,-28.8989,-303.247	1/2:6:0,1,5:0:0:1,5:36,180:-17.9843,-15.0469,-14.7459,-3.29724,0,-1.79209	1/1:59:0,59,0:0:0:59,0:2072,0:-186.684,-17.7608,0,-186.684,-17.7608,-186.684	1/2:52:0,38,14:0:0:38,14:1310,500:-147.526,-41.1218,-29.6826,-106.758,0,-102.544	1/1:7:0,7,0:0:0:7,0:239,0:-21.8431,-2.10721,0,-21.8431,-2.10721,-21.8431	1/2:72:0,30,42:0:0:30,42:1029,1496:-205.819,-122.291,-113.26,-83.8756,0,-71.2323	1/1:40:0,39,0:0:0:39,0:1346,0:-121.071,-11.7402,0,-121.071,-11.7402,-121.071	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136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chr11	2962141	.	A	G	64080.7	PASS	AB=0.559397;ABP=204.217;AC=53;AF=0.281915;AN=188;AO=3685;CIGAR=1X;DP=10686;DPB=10686;DPRA=1.45604;EPP=7996.2;EPPR=15110.1;GTI=5;LEN=1;MEANALT=1.07018;MQM=59.9997;MQMR=59.9983;NS=94;NUMALT=1;ODDS=0.804953;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131459;QR=250218;RO=6997;RPL=1;RPP=7996.2;RPPR=15110.1;RPR=3684;RUN=1;SAF=3685;SAP=8004.89;SAR=0;SRF=6997;SRP=15196.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:24,61:24:849:61:2145:-167.726,0,-51.1403	0/1:188:73,114:73:2597:114:4079:-310.642,0,-177.325	0/1:351:164,187:164:5835:187:6674:-495.075,0,-419.6	0/1:229:126,103:126:4516:103:3685:-262.915,0,-337.671	0/0:68:66,2:66:2372:2:72:0,-13.6333,-206.901	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:185:87,98:87:3082:98:3516:-260.959,0,-221.916	0/1:128:41,87:41:1472:87:3120:-242.494,0,-94.2443	0/1:102:51,51:51:1828:51:1832:-134.456,0,-134.096	0/1:85:37,48:37:1315:48:1705:-128.146,0,-93.0635	0/0:56:56,0:56:1997:0:0:0,-16.8577,-180.002	0/1:56:25,31:25:888:31:1112:-83.5337,0,-63.3813	0/1:74:37,37:37:1328:37:1320:-96.8257,0,-97.546	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.206	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:79:33,46:33:1180:46:1652:-125.187,0,-82.7267	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/1:41:22,19:22:792:19:680:-49.1869,0,-59.2634	0/1:248:134,114:134:4804:114:4085:-293.178,0,-357.86	0/0:142:142,0:142:5062:0:0:0,-42.7463,-455.724	0/1:438:118,319:118:4217:319:11408:-894.685,0,-247.799	0/1:94:28,66:28:993:66:2357:-184.09,0,-61.3857	0/1:107:53,54:53:1896:54:1913:-140.235,0,-138.708	0/0:89:89,0:89:3165:0:0:0,-26.7917,-285.074	0/1:386:169,217:169:6057:217:7695:-576.386,0,-429.033	0/0:179:179,0:179:6406:0:0:0,-53.8844,-576.625	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:352:352,0:352:12528:0:0:0,-105.963,-1127.35	0/1:139:54,85:54:1932:85:3011:-229.374,0,-132.313	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:12:12,0:12:417:0:0:0,-3.61236,-37.8602	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:197:94,103:94:3365:103:3680:-272.099,0,-243.761	0/0:224:222,1:222:7923:1:32:0,-64.2703,-709.873	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:154:62,92:62:2217:92:3308:-251.579,0,-153.434	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:195:195,0:195:6996:0:0:0,-58.7008,-629.701	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:60:29,31:29:1044:31:1112:-82.3295,0,-76.2107	0/1:136:57,79:57:2033:79:2824:-213.459,0,-142.3	0/1:134:56,78:56:1997:78:2762:-208.482,0,-139.664	0/0:211:211,0:211:7538:0:0:0,-63.5173,-678.459	0/1:144:63,81:63:2264:81:2876:-215.727,0,-160.674	0/1:126:63,63:63:2241:63:2230:-163.031,0,-164.022	0/0:123:123,0:123:4344:0:0:0,-37.0267,-391.134	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:302:139,163:139:4962:163:5836:-434.438,0,-355.816	0/1:54:33,21:33:1188:21:756:-52.1116,0,-90.973	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:129:77,52:77:2726:52:1864:-129.207,0,-206.748	0/0:48:46,2:46:1656:2:72:0,-7.61272,-142.492	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:25:11,14:11:396:14:489:-36.8131,0,-28.457	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:121:57,64:57:2052:64:2277:-168.766,0,-148.527	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:239:239,0:239:8557:0:0:0,-71.9462,-770.126	0/1:274:147,127:147:5258:127:4511:-323.674,0,-390.871	0/1:50:25,25:25:896:25:896:-65.9089,0,-65.9089	0/0:85:85,0:85:3033:0:0:0,-25.5875,-273.199	0/1:218:86,132:86:3092:132:4721:-359.424,0,-212.882	0/1:202:30,171:30:1076:171:6075:-485.985,0,-36.286	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:94:94,0:94:3349:0:0:0,-28.2968,-301.626	0/1:79:41,38:41:1468:38:1360:-98.9192,0,-108.635	0/1:13:3,10:3:108:10:356:-28.4679,0,-6.16178	0/1:127:77,50:77:2756:50:1796:-123.692,0,-210.051	0/1:53:28,25:28:989:25:855:-61.303,0,-73.3674	0/1:177:57,120:57:2021:120:4270:-331.195,0,-128.879	0/0:216:214,2:214:7688:2:72:0,-58.1858,-685.114	0/0:154:154,0:154:5491:0:0:0,-46.3586,-494.314	0/1:120:45,75:45:1601:75:2673:-204.69,0,-108.255	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:151:81,70:81:2893:70:2478:-177.815,0,-215.149	0/0:176:176,0:176:6317:0:0:0,-52.9813,-568.618	0/0:266:264,2:264:9457:2:72:0,-73.2373,-844.25	0/1:123:68,55:68:2448:55:1976:-141.088,0,-183.548	0/1:45:23,22:23:828:22:792:-58.0593,0,-61.2978	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/0:140:140,0:140:5016:0:0:0,-42.1442,-451.586	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:86:43,43:43:1544:43:1544:-113.364,0,-113.364	0/1:90:47,43:47:1688:43:1540:-111.8,0,-125.114	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:70:30,40:30:1076:40:1436:-108.466,0,-76.0808	0/1:67:27,40:27:968:40:1425:-108.376,0,-67.2684	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.882	0/0:98:98,0:98:3493:0:0:0,-29.5009,-314.58
chr11	2962177	.	A	G	139743	PASS	AB=0.439021;ABP=214.08;AC=135;AF=0.718085;AN=188;AO=6947;CIGAR=1X;DP=10629;DPB=10629;DPRA=38.086;EPP=15088.2;EPPR=7989.69;GTI=5;LEN=1;MEANALT=1.04301;MQM=59.9994;MQMR=59.9951;NS=94;NUMALT=1;ODDS=1.0543;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=248200;QR=131469;RO=3678;RPL=6947;RPP=15088.2;RPPR=7989.69;RPR=0;RUN=1;SAF=6947;SAP=15088.2;SAR=0;SRF=3678;SRP=7989.69;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:84:59,25:59:2116:25:892:-55.3132,0,-165.422	0/1:189:116,73:116:4141:73:2624:-179.512,0,-315.978	0/1:350:189,160:189:6706:160:5709:-408.509,0,-498.195	0/1:225:101,124:101:3607:124:4433:-331.408,0,-257.104	1/1:67:2,65:2:72:65:2332:-203.303,-13.3323,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:185:98,87:98:3524:87:3070:-220.836,0,-261.678	0/1:129:88,41:88:3152:41:1468:-93.5832,0,-245.072	0/1:101:50,51:50:1796:51:1828:-134.397,0,-131.518	0/1:81:45,36:45:1616:36:1288:-91.8402,0,-121.347	1/1:53:0,53:0:0:53:1885:-169.927,-15.9546,0	0/1:55:30,25:30:1064:25:896:-64.4037,0,-79.515	0/1:74:38,36:38:1344:36:1279:-93.1362,0,-98.9812	1/1:67:0,67:0:0:67:2384:-214.818,-20.169,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:80:46,34:46:1652:34:1211:-85.2131,0,-124.886	1/1:51:0,51:0:0:51:1794:-161.74,-15.3525,0	0/1:41:19,22:19:669:22:784:-58.5417,0,-48.1917	0/1:245:111,134:111:3969:134:4790:-357.503,0,-283.647	1/1:138:0,138:0:0:138:4921:-443.039,-41.5421,0	0/1:439:320,119:320:11396:119:4268:-252.145,0,-893.368	0/1:97:68,29:68:2444:29:1044:-65.0749,0,-191.015	0/1:105:53,52:53:1900:52:1858:-135.891,0,-139.67	1/1:89:0,89:0:0:89:3146:-283.365,-26.7917,0	0/1:387:221,166:221:7894:166:5937:-417.939,0,-593.986	1/1:180:0,180:0:0:180:6401:-576.18,-54.1854,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:351:0,351:0:0:351:12549:-1129.24,-105.662,0	0/1:138:84,54:84:3001:54:1932:-132.614,0,-228.778	1/1:96:1,95:1:36:95:3382:-300.995,-25.3006,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:196:103,93:103:3677:93:3296:-237.857,0,-272.13	1/1:223:1,221:1:36:221:7916:-708.863,-63.5902,0	1/1:60:0,60:0:0:60:2126:-191.607,-18.0618,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:154:89,65:89:3192:65:2332:-163.781,0,-241.144	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:191:0,191:0:0:191:6804:-612.431,-57.4967,0	1/1:77:0,77:0:0:77:2733:-246.213,-23.1793,0	0/1:61:32,29:32:1152:29:1032:-74.8283,0,-85.6273	0/1:132:79,53:79:2820:53:1904:-131.902,0,-214.304	0/1:135:75,60:75:2676:60:2152:-153.308,0,-200.447	1/1:208:0,208:0:0:208:7442:-669.823,-62.6142,0	0/1:141:77,64:77:2768:64:2296:-164.456,0,-206.915	0/1:125:61,64:61:2165:64:2292:-168.913,0,-157.487	1/1:120:0,119:0:0:119:4223:-379.889,-35.8226,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:301:161,140:161:5759:140:5000:-359.536,0,-427.815	0/1:54:21,33:21:756:33:1155:-87.9986,0,-52.1116	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:127:53,74:53:1908:74:2629:-198.626,0,-133.697	1/1:49:2,47:2:72:47:1680:-144.65,-7.91375,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	1/1:28:1,27:1:36:27:968:-83.8391,-4.83057,0	0/1:123:65,58:65:2336:58:2064:-149.005,0,-173.473	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:236:0,236:0:0:236:8475:-762.747,-71.0431,0	0/1:274:128,146:128:4592:146:5228:-388.176,0,-330.961	0/1:50:25,25:25:896:25:892:-65.5482,0,-65.9089	1/1:85:0,85:0:0:85:3018:-271.849,-25.5876,0	0/1:214:131,83:131:4712:83:2951:-201.401,0,-359.817	0/1:205:173,32:173:6182:32:1144:-41.5578,0,-494.764	0/1:7:1,6:1:36:6:215:-17.592,0,-1.49106	1/1:94:0,94:0:0:94:3371:-303.605,-28.2968,0	0/1:77:38,39:38:1348:39:1396:-102.76,0,-98.4409	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:127:50,77:50:1784:77:2752:-209.692,0,-122.612	0/1:51:24,27:24:860:27:964:-71.7243,0,-62.3693	0/1:176:119,57:119:4260:57:2048:-131.61,0,-330.597	1/1:216:2,214:2:72:214:7661:-682.686,-58.1858,0	1/1:154:0,154:0:0:154:5515:-496.475,-46.3586,0	0/1:117:75,42:75:2669:42:1508:-100.794,0,-205.234	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:150:71,79:71:2548:79:2829:-209.692,0,-184.416	1/1:176:0,175:0:0:175:6249:-562.143,-52.6803,0	1/1:264:1,263:1:36:263:9404:-842.722,-75.8736,0	0/1:120:55,65:55:1968:65:2328:-173.656,0,-141.271	0/1:47:23,24:23:813:24:864:-63.9342,0,-59.3407	1/1:98:0,98:0:0:98:3490:-314.311,-29.5009,0	1/1:139:0,139:0:0:139:4970:-447.448,-41.8432,0	1/1:46:0,46:0:0:46:1646:-148.428,-13.8474,0	0/1:84:42,42:42:1512:42:1502:-110.188,0,-111.088	0/1:91:46,45:46:1648:45:1612:-117.976,0,-121.215	1/1:31:0,31:0:0:31:1110:-100.211,-9.33193,0	0/1:71:42,29:42:1491:29:1036:-72.1808,0,-113.111	0/1:65:39,26:39:1366:26:936:-64.9925,0,-103.667	1/1:152:0,152:0:0:152:5462:-491.706,-45.7566,0	1/1:98:0,98:0:0:98:3507:-315.84,-29.5009,0
chr11	3162565	.	T	A	42650	PASS	AB=0.501583;ABP=3.12029;AC=53;AF=0.281915;AN=188;AO=2543;CIGAR=1X;DP=8721;DPB=8721;DPRA=1.14635;EPP=5516.38;EPPR=13411.9;GTI=0;LEN=1;MEANALT=1.05085;MQM=60;MQMR=59.9938;NS=94;NUMALT=1;ODDS=3.22368;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90635;QR=221156;RO=6175;RPL=1;RPP=5516.38;RPPR=13411.9;RPR=2542;RUN=1;SAF=2543;SAP=5525.06;SAR=0;SRF=6175;SRP=13411.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:20,6:20:716:6:216:-11.9637,0,-56.9409	0/1:73:42,31:42:1489:31:1116:-78.7765,0,-112.327	0/1:193:95,98:95:3404:98:3508:-257.832,0,-248.476	0/1:230:116,114:116:4168:114:4034:-294.012,0,-306.064	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:98:48,50:48:1724:50:1784:-131.342,0,-125.944	0/1:135:61,74:61:2188:74:2621:-195.498,0,-156.547	0/1:116:60,56:60:2152:56:2008:-146.074,0,-159.028	0/1:108:58,50:58:2069:50:1788:-128.691,0,-153.968	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/1:121:63,58:63:2256:58:2084:-151.405,0,-166.878	0/1:100:52,48:52:1863:48:1709:-123.991,0,-137.846	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:73:72,1:72:2584:1:36:0,-18.3769,-229.211	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:33:14,19:14:504:19:665:-50.2388,0,-35.7641	0/1:175:79,96:79:2810:96:3411:-254.526,0,-200.457	0/0:265:265,0:265:9489:0:0:0,-79.7729,-853.966	0/1:59:22,36:22:788:36:1296:-99.1244,0,-53.4253	0/1:165:94,71:94:3360:71:2540:-179.181,0,-252.947	0/1:30:22,8:22:792:8:288:-17.2365,0,-62.5748	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:251:119,132:119:4252:132:4690:-346.702,0,-307.299	0/0:290:290,0:290:10401:0:0:0,-87.2987,-936.005	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:271:271,0:271:9744:0:0:0,-81.5791,-876.901	0/1:123:64,59:64:2296:59:2112:-153.322,0,-169.874	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:209:92,117:92:3291:117:4208:-315.983,0,-233.494	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.307	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:115:56,59:56:1993:59:2116:-156.09,0,-145.024	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:159:158,1:158:5653:1:23:0,-45.5639,-506.589	0/0:58:58,0:58:2060:0:0:0,-17.4597,-185.669	0/1:54:32,22:32:1148:22:792:-55.3501,0,-87.3742	0/1:195:87,108:87:3124:108:3857:-288.624,0,-222.685	0/1:123:64,59:64:2277:59:2090:-151.34,0,-168.164	0/0:143:143,0:143:5093:0:0:0,-43.0473,-458.515	0/1:104:51,53:51:1808:53:1881:-138.26,0,-131.692	0/1:107:54,53:54:1932:53:1885:-137.716,0,-141.944	0/0:142:142,0:142:5050:0:0:0,-42.7463,-454.645	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:101:50,51:50:1796:51:1817:-133.405,0,-131.518	0/1:43:23,20:23:824:20:712:-51.4624,0,-61.539	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:130:53,77:53:1900:77:2743:-207.979,0,-132.144	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:65:65,0:65:2309:0:0:0,-19.5669,-208.069	0/1:79:37,42:37:1324:42:1508:-112.233,0,-95.6807	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:151:151,0:151:5401:0:0:0,-45.4555,-486.219	0/1:126:66,60:66:2364:60:2122:-153.315,0,-175.089	0/1:85:48,37:48:1724:37:1313:-92.8821,0,-129.858	0/0:74:73,1:73:2620:1:36:0,-18.6779,-232.449	0/1:155:83,72:83:2980:72:2546:-182.729,0,-221.772	0/1:138:50,88:50:1792:88:3122:-239.663,0,-120.02	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/0:87:86,1:86:3076:1:36:0,-22.5913,-273.47	0/1:33:16,17:16:572:17:612:-45.4794,0,-41.8794	0/1:22:8,14:8:273:14:496:-38.3516,0,-18.2775	0/1:146:89,57:89:3196:57:2008:-137.038,0,-243.912	0/1:107:61,46:61:2188:46:1633:-115.047,0,-164.975	0/1:181:99,82:99:3533:82:2906:-207.287,0,-263.692	0/0:171:169,2:169:6080:2:72:0,-44.6394,-540.461	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:97:40,57:40:1440:57:2036:-154.312,0,-100.698	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:114:68,46:68:2436:46:1618:-111.588,0,-185.178	0/0:129:127,2:127:4560:2:72:0,-31.9961,-403.728	0/0:302:302,0:302:10813:0:0:0,-90.9111,-973.068	0/1:55:32,23:32:1152:23:828:-58.2875,0,-87.4335	0/1:63:26,37:26:932:37:1324:-100.497,0,-65.234	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:161:161,0:161:5776:0:0:0,-48.4658,-519.953	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:88:41,47:41:1468:47:1688:-125.716,0,-104.987	0/1:71:34,37:34:1198:37:1324:-98.089,0,-86.7509	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:81:41,39:41:1468:39:1389:-100.865,0,-107.974	0/1:97:33,63:33:1184:63:2260:-174.404,0,-77.6096	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:105:105,0:105:3767:0:0:0,-31.6081,-339.228
chr11	3178508	.	C	T	162874	PASS	AB=0.3682;ABP=1334.41;AC=135;AF=0.718085;AN=188;AO=7299;CIGAR=1X;DP=12889;DPB=12889;DPRA=0;EPP=15835.2;EPPR=12115.5;GTI=12;LEN=1;MEANALT=1.04255;MQM=58.2694;MQMR=48.4477;NS=94;NUMALT=1;ODDS=0.937967;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=260800;QR=197280;RO=5586;RPL=6383;RPP=8894.8;RPPR=25.0298;RPR=916;RUN=1;SAF=6385;SAP=8907.81;SAR=914;SRF=2912;SRP=25.0298;SRR=2674;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:117:61,55:61:2114:55:1976:-142.835,0,-145.683	0/1:139:88,51:88:3135:51:1820:-122.238,0,-213.55	0/1:270:176,94:176:6242:94:3333:-218.908,0,-459.833	0/1:299:206,93:206:7277:93:3321:-209.099,0,-539.066	1/1:91:6,85:6:203:85:3052:-256.308,-8.79255,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:189:121,68:121:4267:68:2436:-162.601,0,-313.051	0/1:271:183,88:183:6477:88:3136:-200.885,0,-465.224	0/1:196:128,68:128:4510:68:2433:-160.222,0,-325.053	0/1:125:72,53:72:2557:53:1900:-133.649,0,-184.007	1/1:59:0,59:0:0:59:2100:-188.775,-17.7608,0	0/1:143:90,53:90:3121:53:1892:-127.511,0,-223.072	0/1:125:80,45:80:2828:45:1595:-106.211,0,-200.11	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:46:0,46:0:0:46:1623:-146.358,-13.8474,0	0/1:58:52,6:52:1847:6:212:-1.96506,0,-134.615	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	0/1:47:32,15:32:1131:15:540:-34.7881,0,-79.1556	0/1:251:165,86:165:5874:86:3078:-201.69,0,-433.182	1/1:157:0,157:0:0:157:5634:-507.178,-47.2617,0	0/1:241:158,83:158:5592:83:2968:-193.959,0,-416.726	0/1:228:146,82:146:5133:82:2919:-194.311,0,-384.288	0/1:178:95,83:95:3366:83:2958:-212.87,0,-231.734	1/1:178:0,177:0:0:177:6310:-567.632,-53.2823,0	0/1:539:270,268:270:9621:268:9584:-694.112,0,-675.413	1/1:208:0,208:0:0:208:7452:-670.724,-62.6142,0	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	1/1:396:0,396:0:0:396:14163:-1265.94,-119.208,0	0/1:151:105,45:105:3749:45:1603:-99.1604,0,-267.919	1/1:100:3,97:3:104:97:3471:-302.709,-20.4002,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:25:1,24:1:36:24:864:-74.4834,-3.92748,0	0/1:441:218,223:218:7627:223:7986:-580.004,0,-531.873	1/1:136:0,136:0:0:136:4863:-437.824,-40.9401,0	1/1:43:0,43:0:0:43:1516:-136.733,-12.9443,0	0/1:4:2,2:2:68:2:72:-5.6326,0,-4.7522	0/1:167:101,66:101:3566:66:2364:-162.617,0,-257.554	1/1:31:0,31:0:0:31:1082:-97.6864,-9.33193,0	1/1:216:0,216:0:0:216:7725:-695.237,-65.0225,0	1/1:64:0,64:0:0:64:2288:-206.182,-19.2659,0	0/1:90:64,26:64:2251:26:920:-55.938,0,-168.811	0/1:265:131,134:131:4640:134:4778:-349.22,0,-331.303	0/1:240:154,86:154:5437:86:3028:-199.226,0,-383.285	1/1:166:0,166:0:0:166:5944:-535.068,-49.971,0	0/1:164:115,49:115:4088:49:1764:-109.675,0,-301.494	0/1:211:151,60:151:5373:60:2148:-130.07,0,-402.77	1/1:277:0,277:0:0:277:9932:-885.652,-83.3853,0	0/1:13:8,5:8:280:5:176:-12.2716,0,-20.8429	0/1:181:118,63:118:4158:63:2259:-149.086,0,-297.441	0/1:111:50,61:50:1758:61:2184:-162.501,0,-120.986	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:254:167,87:167:5864:87:3109:-203.574,0,-426.45	1/1:84:3,81:3:108:81:2891:-250.037,-15.9173,0	0/1:8:4,4:4:135:4:144:-10.9054,0,-9.9127	0/1:38:13,25:13:464:25:900:-69.6766,0,-29.7953	1/1:101:0,101:0:0:101:3589:-323.217,-30.404,0	0/1:143:107,36:107:3768:36:1277:-72.1838,0,-281.332	0/1:6:5,1:5:172:1:36:-1.79209,0,-13.9027	1/1:288:0,288:0:0:288:10316:-921.537,-86.6966,0	0/1:331:221,110:221:7809:110:3916:-252.992,0,-580.712	0/1:139:99,40:99:3466:40:1440:-88.0546,0,-255.136	1/1:81:0,81:0:0:81:2896:-260.876,-24.3834,0	0/1:317:193,124:193:6801:124:4418:-302.366,0,-495.174	0/1:288:207,81:207:7328:81:2884:-173.1,0,-557.969	0/1:55:31,24:31:1108:24:860:-61.1652,0,-78.711	1/1:60:0,60:0:0:60:2151:-193.857,-18.0618,0	0/1:149:70,79:70:2467:79:2836:-206.398,0,-169.393	0/1:37:24,13:24:860:13:468:-31.3215,0,-62.7615	0/1:200:123,77:123:4329:77:2748:-187.357,0,-308.42	0/1:135:87,48:87:3068:48:1716:-114.087,0,-219.673	0/1:265:165,100:165:5772:100:3569:-241.644,0,-422.726	1/1:131:0,131:0:0:131:4700:-423.159,-39.4349,0	1/1:102:0,102:0:0:102:3645:-328.255,-30.7051,0	0/1:185:141,44:141:5019:44:1572:-84.8042,0,-362.434	0/1:22:12,10:12:424:10:360:-26.1216,0,-31.4426	0/1:159:115,44:115:4045:44:1559:-92.7371,0,-299.746	1/1:80:0,80:0:0:80:2854:-257.097,-24.0824,0	1/1:212:0,212:0:0:212:7603:-683.287,-63.8184,0	0/1:113:84,29:84:2971:29:1036:-59.5375,0,-222.491	0/1:81:50,31:50:1779:31:1088:-73.8287,0,-129.921	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:106:1,105:1:36:105:3755:-334.803,-28.563,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:113:78,35:78:2755:35:1223:-76.3537,0,-195.037	0/1:126:78,48:78:2759:48:1707:-115.985,0,-195.372	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:80:59,21:59:2070:21:736:-42.4781,0,-152.154	0/1:126:99,27:99:3473:27:964:-49.147,0,-262.806	1/1:96:0,96:0:0:96:3422:-308.194,-28.8989,0	1/1:125:0,125:0:0:125:4471:-402.559,-37.6288,0
chr11	3178513	.	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chr11	3178531	.	A	C	39034.9	PASS	AB=0.501602;ABP=3.12855;AC=54;AF=0.287234;AN=188;AO=2668;CIGAR=1X;DP=9203;DPB=9203;DPRA=1.06923;EPP=5303.67;EPPR=14158.9;GTI=1;LEN=1;MEANALT=1.03571;MQM=35.8523;MQMR=47.5797;NS=94;NUMALT=1;ODDS=0.687783;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94730;QR=233213;RO=6531;RPL=60;RPP=5287.07;RPPR=14115.5;RPR=2608;RUN=1;SAF=2;SAP=5779.14;SAR=2666;SRF=5;SRP=14141.5;SRR=6526;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:27,25:27:964:25:878:-52.7502,0,-70.9729	0/1:141:76,65:76:2708:65:2324:-139.201,0,-199.576	0/1:92:46,46:46:1631:46:1648:-99.7088,0,-118.641	0/1:160:60,99:60:2134:99:3530:-243.062,0,-142.12	0/0:62:62,0:62:2232:0:0:0,-18.6639,-199.547	0/0:124:124,0:124:4438:0:0:0,-37.3277,-395.729	0/1:126:73,53:73:2616:53:1871:-117.124,0,-195.74	0/1:175:95,80:95:3376:80:2834:-167.431,0,-249.745	0/1:98:47,51:47:1666:51:1803:-110.521,0,-119.579	0/1:71:38,33:38:1359:33:1150:-74.7083,0,-100.056	0/0:63:63,0:63:2230:0:0:0,-18.9649,-198.992	0/1:85:49,36:49:1704:36:1267:-74.0132,0,-126.443	0/1:70:31,39:31:1100:39:1395:-87.9162,0,-77.7135	0/0:82:82,0:82:2927:0:0:0,-24.6845,-260.549	0/0:103:103,0:103:3674:0:0:0,-31.0061,-326.817	0/0:52:52,0:52:1860:0:0:0,-15.6536,-166.216	0/1:64:28,36:28:1000:36:1260:-79.5624,0,-70.4163	0/0:67:67,0:67:2357:0:0:0,-20.169,-210.843	0/1:55:34,21:34:1220:21:744:-42.1184,0,-92.9436	0/1:184:98,86:98:3516:86:3070:-201.432,0,-257.235	0/0:169:168,0:168:6002:0:0:0,-50.573,-534.84	0/1:114:33,81:33:1165:81:2897:-213.929,0,-69.7764	0/1:100:70,30:70:2499:30:1067:-58.0735,0,-192.856	0/1:155:97,58:97:3440:58:2071:-122.366,0,-258.572	0/0:105:105,0:105:3738:0:0:0,-31.6081,-334.261	0/1:298:143,155:143:5090:155:5496:-377.906,0,-362.721	0/0:229:229,0:229:8175:0:0:0,-68.9359,-729.273	0/0:41:41,0:41:1464:0:0:0,-12.3422,-130.518	0/0:186:186,0:186:6650:0:0:0,-55.9916,-590.228	0/1:138:72,66:72:2573:66:2351:-145.227,0,-187.946	0/0:110:109,1:109:3886:1:36:0,-29.5399,-342.064	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6539	0/0:11:11,0:11:396:0:0:0,-3.31133,-33.9413	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0205	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.335	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0205	0/1:256:136,119:136:4831:119:4210:-279.802,0,-352.388	0/0:177:177,0:177:6304:0:0:0,-53.2823,-560.711	0/0:71:70,0:70:2489:0:0:0,-21.0721,-222.442	0/1:3:1,2:1:36:2:72:-5.26461,0,-2.67034	0/1:119:78,41:78:2800:41:1453:-82.4127,0,-211.875	0/0:21:21,0:21:748:0:0:0,-6.32163,-66.8688	0/0:174:174,0:174:6260:0:0:0,-52.3792,-557.565	0/0:126:126,0:126:4466:0:0:0,-37.9298,-397.717	0/1:77:45,32:45:1620:32:1121:-71.4381,0,-120.816	0/1:81:42,39:42:1499:39:1404:-95.7353,0,-109.669	0/1:134:55,79:55:1976:79:2812:-177.542,0,-136.08	0/0:179:179,0:179:6404:0:0:0,-53.8844,-570.452	0/1:139:67,72:67:2395:72:2563:-171.365,0,-172.155	0/1:149:79,70:79:2844:70:2514:-164.69,0,-207.508	0/0:153:153,0:153:5414:0:0:0,-46.0576,-480.027	0/1:8:5,3:5:180:3:108:-7.19469,0,-13.6746	0/1:117:64,53:64:2292:53:1870:-111.098,0,-169.751	0/1:44:18,26:18:648:26:936:-66.697,0,-44.8997	0/0:12:12,0:12:419:0:0:0,-3.61236,-37.7075	0/1:118:37,81:37:1328:81:2858:-197.133,0,-81.7987	0/0:35:32,3:32:1139:3:108:0,-1.16684,-91.4388	1/1:1:0,1:0:0:1:36:-3.4236,-0.30103,0	0/1:13:8,5:8:280:5:176:-11.5197,0,-21.4527	0/0:98:98,0:98:3494:0:0:0,-29.5009,-311.34	0/1:116:55,61:55:1968:61:2160:-144.694,0,-141.198	0/1:7:6,1:6:216:1:36:-1.23894,0,-17.5467	0/0:155:155,0:155:5561:0:0:0,-46.6596,-493.812	0/1:202:95,107:95:3412:107:3823:-259.364,0,-243.531	0/1:89:40,49:40:1436:49:1743:-115.389,0,-101.514	0/0:73:73,0:73:2624:0:0:0,-21.9752,-234.391	0/1:181:79,102:79:2831:102:3594:-246.697,0,-198.039	0/1:97:39,58:39:1400:58:2072:-143.394,0,-95.7447	0/1:26:13,13:13:468:13:441:-28.3206,0,-34.3541	0/0:101:101,0:101:3619:0:0:0,-30.404,-324.009	0/1:106:57,49:57:2036:49:1742:-116.215,0,-147.485	0/1:26:12,14:12:428:14:500:-33.7957,0,-30.7425	0/1:116:60,56:60:2156:56:1978:-121.423,0,-158.389	0/1:101:70,31:70:2505:31:1099:-53.9003,0,-192.356	0/1:92:32,60:32:1148:60:2118:-145.221,0,-73.8877	0/0:139:139,0:139:4983:0:0:0,-41.8432,-444.265	0/0:80:80,0:80:2848:0:0:0,-24.0824,-252.634	0/1:136:53,83:53:1891:83:2935:-190.172,0,-126.074	0/1:10:8,2:8:288:2:72:-3.37552,0,-22.8112	0/1:96:40,56:40:1440:56:1996:-133.332,0,-99.7941	0/0:111:111,0:111:3964:0:0:0,-33.4143,-353.586	0/0:169:169,0:169:6063:0:0:0,-50.8741,-539.616	0/1:95:53,42:53:1889:42:1496:-95.5122,0,-137.316	0/1:65:42,23:42:1508:23:824:-49.7929,0,-114.774	0/0:126:126,0:126:4524:0:0:0,-37.9298,-403.152	0/0:177:176,1:176:6244:1:36:0,-49.9362,-551.371	0/0:37:37,0:37:1319:0:0:0,-11.1381,-118.044	0/1:86:41,45:41:1444:45:1605:-99.9838,0,-103.561	0/1:71:33,38:33:1180:38:1347:-83.9915,0,-83.9357	0/0:31:31,0:31:1103:0:0:0,-9.33193,-98.5783	0/1:84:45,39:45:1608:39:1378:-88.0888,0,-118.691	0/1:69:18,51:18:648:51:1802:-130.662,0,-37.4759	0/0:97:97,0:97:3469:0:0:0,-29.1999,-309.768	0/0:128:128,0:128:4580:0:0:0,-38.5318,-408.822
chr11	3187292	.	C	T	143308	PASS	AB=0.543251;ABP=85.4711;AC=134;AF=0.712766;AN=188;AO=6887;CIGAR=1X;DP=9222;DPB=9222;DPRA=49.5699;EPP=14836.6;EPPR=4969.62;GTI=3;LEN=1;MEANALT=1.04301;MQM=59.9728;MQMR=59.9987;NS=94;NUMALT=1;ODDS=0.533652;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245470;QR=82619;RO=2331;RPL=14;RPP=14836.6;RPPR=4969.62;RPR=6873;RUN=1;SAF=6887;SAP=14957.9;SAR=0;SRF=2331;SRP=5064.71;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:51:18,33:18:631:33:1167:-89.9839,0,-41.7632	0/1:129:64,65:64:2272:65:2316:-169.867,0,-165.91	0/1:151:66,85:66:2347:85:3028:-227.296,0,-166.033	0/1:168:58,110:58:2059:110:3917:-302.15,0,-135.008	1/1:62:1,61:1:27:61:2167:-192.597,-15.9641,0	1/1:91:2,89:2:68:89:3180:-279.967,-20.936,0	0/1:144:49,95:49:1744:95:3388:-261.788,0,-113.896	0/1:132:73,59:73:2584:59:2116:-150.973,0,-193.075	0/1:94:47,47:47:1676:47:1676:-122.83,0,-122.83	0/1:46:16,30:16:564:30:1068:-82.5847,0,-37.2429	1/1:112:0,112:0:0:112:3957:-356.323,-33.7154,0	0/1:84:35,49:35:1235:49:1752:-132.678,0,-86.1669	0/1:76:37,39:37:1302:39:1386:-102.123,0,-94.6015	1/1:109:0,109:0:0:109:3899:-351.103,-32.8123,0	1/1:83:1,82:1:32:82:2918:-259.654,-21.7862,0	1/1:60:0,60:0:0:60:2145:-193.317,-18.0618,0	0/1:109:50,59:50:1792:59:2095:-156.007,0,-128.75	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:64:33,31:33:1172:31:1112:-81.1254,0,-86.5216	0/1:145:74,71:74:2635:71:2533:-184.57,0,-193.748	1/1:203:0,203:0:0:203:7218:-649.68,-61.1091,0	0/1:83:52,31:52:1868:31:1080:-72.5102,0,-143.414	0/1:56:28,28:28:984:28:1000:-73.4577,0,-72.0157	0/1:107:54,53:54:1894:53:1899:-138.978,0,-138.527	1/1:99:0,99:0:0:99:3536:-318.45,-29.802,0	0/1:245:95,150:95:3367:150:5355:-408.331,0,-229.496	1/1:265:0,265:0:0:265:9405:-846.417,-79.773,0	1/1:42:1,41:1:36:41:1476:-129.536,-9.04499,0	1/1:260:0,260:0:0:260:9279:-835.079,-78.2678,0	0/1:123:46,77:46:1639:77:2739:-209.726,0,-110.771	1/1:131:0,131:0:0:131:4660:-419.554,-39.4349,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:205:79,126:79:2779:126:4494:-342.913,0,-188.638	1/1:150:1,149:1:36:149:5315:-474.888,-41.5562,0	1/1:101:0,101:0:0:101:3601:-324.296,-30.404,0	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07869	0/1:143:62,81:62:2216:81:2892:-217.469,0,-156.657	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:147:1,146:1:36:146:5184:-463.104,-40.6531,0	1/1:101:0,101:0:0:101:3598:-324.027,-30.404,0	0/1:60:31,29:31:1065:29:1032:-75.1317,0,-78.0932	0/1:92:42,50:42:1486:50:1788:-133.508,0,-106.338	0/1:109:42,67:42:1491:67:2376:-181.287,0,-101.672	1/1:124:0,124:0:0:124:4406:-396.013,-37.3277,0	0/1:76:29,47:29:1027:47:1666:-127.349,0,-69.8639	0/1:142:57,85:57:2023:85:3026:-229.824,0,-139.596	1/1:150:0,150:0:0:150:5324:-479.295,-45.1545,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:102:43,59:43:1536:59:2116:-160.004,0,-107.828	0/1:40:19,21:19:668:21:752:-55.9651,0,-48.4045	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:87:42,45:42:1491:45:1616:-119.54,0,-108.294	1/1:31:1,30:1:36:30:1080:-93.915,-5.73366,0	0/1:9:5,4:5:167:4:144:-10.6043,0,-12.6491	0/1:18:6,12:6:216:12:417:-32.4417,0,-14.372	1/1:69:0,69:0:0:69:2453:-221.023,-20.7711,0	0/1:105:58,47:58:2071:47:1692:-120.959,0,-155.052	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3376	1/1:153:0,153:0:0:153:5464:-491.89,-46.0576,0	0/1:176:78,97:78:2756:97:3459:-258.483,0,-195.244	0/1:87:47,39:47:1651:39:1383:-98.5198,0,-122.629	1/1:111:1,110:1:36:110:3906:-348.05,-29.8161,0	0/1:134:51,82:51:1819:82:2905:-221.291,0,-123.594	0/1:70:44,26:44:1580:26:917:-61.7725,0,-121.419	0/1:49:25,24:25:883:24:860:-62.9714,0,-65.037	1/1:91:0,91:0:0:91:3248:-292.542,-27.3937,0	0/1:119:57,62:57:2011:62:2224:-164.602,0,-145.44	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:59:28,31:28:982:31:1108:-82.2702,0,-70.9309	0/1:46:23,23:23:824:23:824:-60.6359,0,-60.6359	0/1:220:102,118:102:3627:118:4203:-312.226,0,-260.41	1/1:164:0,164:0:0:164:5854:-526.973,-49.3689,0	1/1:95:0,95:0:0:95:3388:-305.136,-28.5979,0	0/1:118:57,61:57:1996:61:2171:-160.134,0,-144.39	0/1:26:12,14:12:409:14:504:-37.8713,0,-29.3087	0/1:77:33,44:33:1172:44:1571:-117.874,0,-82.6082	1/1:154:1,153:1:36:153:5460:-487.932,-42.7603,0	1/1:201:2,199:2:72:199:7119:-633.932,-53.6703,0	0/1:114:60,54:60:2114:54:1927:-139.389,0,-156.211	0/1:61:27,34:27:972:34:1224:-92.1042,0,-69.4351	1/1:106:0,106:0:0:106:3802:-342.377,-31.9092,0	1/1:160:0,159:0:0:159:5681:-511.048,-47.8638,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:108:50,58:50:1763:58:2027:-150.19,0,-126.441	0/1:89:43,46:43:1536:46:1643:-121.366,0,-111.741	1/1:77:0,77:0:0:77:2760:-248.642,-23.1793,0	0/1:216:111,105:111:3946:105:3724:-269.715,0,-290.311	0/1:76:43,33:43:1522:33:1176:-83.2695,0,-114.393	1/1:82:0,82:0:0:82:2896:-260.876,-24.6845,0	1/1:148:2,146:2:72:146:5219:-463.012,-37.7157,0
chr11	3187343	.	C	T	88407.7	PASS	AB=0.552937;ABP=74.2803;AC=134;AF=0.712766;AN=188;AO=4015;CIGAR=1X;DP=5336;DPB=5336;DPRA=16.5497;EPP=7555.93;EPPR=2419.5;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.9497;MQMR=59.9712;NS=94;NUMALT=1;ODDS=3.17717;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143441;QR=47096;RO=1320;RPL=3882;RPP=7604.52;RPPR=2483.73;RPR=133;RUN=1;SAF=6;SAP=8669.43;SAR=4009;SRF=8;SRP=2800.29;SRR=1312;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:38:17,21:17:612:21:748:-56.2062,0,-43.9743	0/1:36:17,19:17:597:19:669:-49.6965,0,-43.219	0/1:87:43,44:43:1510:44:1572:-115.582,0,-110	0/1:78:34,44:34:1224:44:1576:-118.651,0,-86.9867	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:35:1,34:1:36:34:1186:-103.442,-6.93778,0	0/1:61:24,37:24:864:37:1332:-101.82,0,-59.7197	0/1:65:26,39:26:913:39:1392:-106.012,0,-62.9171	0/1:60:44,16:44:1565:16:558:-32.4844,0,-123.078	0/1:38:17,21:17:612:21:747:-56.1158,0,-43.9743	1/1:56:0,56:0:0:56:2008:-180.99,-16.8577,0	0/1:78:32,46:32:1140:46:1656:-125.848,0,-79.4289	0/1:54:28,26:28:1004:26:936:-68.3038,0,-74.4202	1/1:68:0,68:0:0:68:2437:-219.585,-20.47,0	1/1:67:0,67:0:0:67:2408:-216.954,-20.169,0	1/1:59:0,59:0:0:59:2109:-190.077,-17.7608,0	0/1:35:20,15:20:712:15:536:-38.0388,0,-53.8706	1/1:33:1,32:1:36:32:1148:-100.032,-6.33572,0	0/1:37:23,14:23:828:14:500:-34.1981,0,-63.706	0/1:94:45,49:45:1620:49:1741:-128.676,0,-117.793	1/1:100:0,100:0:0:100:3581:-322.439,-30.103,0	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/1:78:25,53:25:870:53:1874:-145.457,0,-55.1317	0/1:13:4,9:4:129:9:324:-25.5925,0,-8.01427	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	0/1:113:43,70:43:1525:70:2516:-192.675,0,-103.525	1/1:137:0,137:0:0:137:4920:-442.949,-41.2411,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:104:0,104:0:0:104:3702:-333.38,-31.3071,0	0/1:79:52,27:52:1872:27:964:-63.2955,0,-144.978	1/1:55:0,55:0:0:55:1938:-174.693,-16.5567,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:18:0,18:0:0:18:637:-57.6572,-5.41854,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:151:72,79:72:2588:79:2826:-209.122,0,-187.713	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:59:0,59:0:0:59:2097:-188.998,-17.7608,0	0/1:4:1,3:1:36:3:108:-8.86629,0,-2.39415	0/1:66:27,39:27:968:39:1400:-106.431,0,-67.5694	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:103:0,103:0:0:103:3696:-332.842,-31.0061,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:45:20,25:20:697:25:900:-67.7747,0,-49.5043	0/1:70:14,56:14:500:56:2012:-160.281,0,-24.2641	0/1:61:28,33:28:1004:33:1180:-88.1452,0,-72.313	1/1:132:0,132:0:0:132:4727:-425.587,-39.736,0	0/1:59:28,31:28:1000:31:1101:-81.6376,0,-72.5546	0/1:80:40,40:40:1413:40:1426:-104.554,0,-103.383	1/1:85:0,85:0:0:85:3022:-272.208,-25.5876,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:59:25,34:25:870:34:1220:-92.346,0,-60.8513	0/1:37:10,27:10:360:27:949:-74.5847,0,-21.6062	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:68:29,39:29:1040:39:1385:-104.477,0,-73.4443	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:4:0,4:0:0:4:135:-11.911,-1.20412,0	1/1:91:0,91:0:0:91:3206:-288.76,-27.3937,0	0/1:62:21,41:21:748:41:1461:-113.121,0,-48.9814	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:95:0,95:0:0:95:3374:-303.874,-28.5979,0	0/1:84:26,58:26:936:58:2080:-162.17,0,-59.2729	0/1:42:19,23:19:680:23:801:-59.7634,0,-48.8859	1/1:37:0,37:0:0:37:1324:-119.144,-11.1381,0	0/1:34:15,19:15:540:19:680:-51.2941,0,-38.7015	0/1:43:26,17:26:921:17:601:-41.2454,0,-69.8897	0/1:64:23,41:23:819:41:1476:-113.87,0,-54.7656	1/1:37:0,37:0:0:37:1321:-119.191,-11.1381,0	0/1:52:24,28:24:860:28:1004:-75.0223,0,-62.0683	0/1:19:6,13:6:216:13:453:-35.3801,0,-14.0709	0/1:63:26,37:26:921:37:1313:-99.5048,0,-64.2403	0/1:58:36,22:36:1292:22:792:-54.1459,0,-99.124	0/1:114:62,51:62:2220:51:1826:-130.377,0,-165.826	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:113:3,110:3:108:110:3921:-343.007,-23.9412,0	0/1:70:26,44:26:913:44:1561:-119.708,0,-61.4119	0/1:8:1,7:1:36:7:248:-20.256,0,-1.19003	0/1:61:22,39:22:788:39:1396:-107.576,0,-52.882	1/1:88:0,88:0:0:88:3153:-283.989,-26.4906,0	1/1:116:0,116:0:0:116:4134:-372.242,-34.9195,0	0/1:51:20,31:20:716:31:1103:-84.2216,0,-49.4152	0/1:51:24,27:24:864:27:951:-70.5494,0,-62.73	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:114:0,114:0:0:114:4073:-366.755,-34.3174,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:67:34,33:34:1220:33:1184:-86.6993,0,-89.9378	0/1:54:24,30:24:864:30:1080:-81.2576,0,-61.8269	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:107:36,71:36:1277:71:2548:-197.359,0,-82.9985	0/1:53:35,18:35:1256:18:648:-42.6973,0,-97.3907	1/1:59:0,59:0:0:59:2124:-191.428,-17.7608,0	1/1:93:0,93:0:0:93:3334:-300.276,-27.9958,0
chr11	3211502	.	A	G	112636	PASS	AB=0.475027;ABP=28.0637;AC=134;AF=0.712766;AN=188;AO=5403;CIGAR=1X;DP=7840;DPB=7840;DPRA=0;EPP=11382.1;EPPR=5165.3;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.98;MQMR=59.9852;NS=94;NUMALT=1;ODDS=2.03061;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193346;QR=87089;RO=2433;RPL=5362;RPP=11382.1;RPPR=5165.3;RPR=41;RUN=1;SAF=0;SAP=11735.5;SAR=5403;SRF=0;SRP=5286.2;SRR=2433;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:14,13:14:500:13:468:-34.3318,0,-37.2084	0/1:70:34,36:34:1220:36:1292:-95.5117,0,-89.0347	0/1:223:113,110:113:4024:110:3925:-286.312,0,-295.218	0/1:281:143,138:143:5110:138:4935:-359.71,0,-375.416	1/1:49:2,47:2:72:47:1692:-145.73,-7.91375,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:83:27,56:27:959:56:2008:-156.008,0,-61.6399	0/1:116:56,60:56:1980:60:2156:-159.387,0,-143.552	0/1:56:26,30:26:932:30:1063:-79.1223,0,-67.3412	0/1:89:29,60:29:1044:60:2137:-165.788,0,-67.4831	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:69:31,38:31:1116:38:1352:-101.209,0,-79.9806	0/1:55:23,32:23:819:32:1144:-86.7129,0,-57.4749	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	1/1:37:0,37:0:0:37:1323:-119.371,-11.1381,0	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:22:12,10:12:432:10:356:-25.7586,0,-32.5985	0/1:165:78,87:78:2791:87:3124:-231.711,0,-201.76	0/1:153:77,75:77:2764:75:2680:-195.457,0,-203.013	0/1:121:92,29:92:3308:29:1044:-57.8502,0,-261.513	0/1:84:34,50:34:1220:50:1777:-134.925,0,-84.8203	0/1:35:14,21:14:500:21:740:-56.3873,0,-34.8001	1/1:78:0,77:0:0:77:2760:-248.282,-23.1793,0	0/1:200:119,81:119:4284:81:2884:-199.589,0,-325.529	1/1:194:0,194:0:0:194:6952:-625.744,-58.3998,0	1/1:29:0,29:0:0:29:1039:-93.8241,-8.72987,0	1/1:267:0,267:0:0:267:9564:-860.677,-80.375,0	0/1:122:65,57:65:2324:57:2044:-147.506,0,-172.695	1/1:96:0,96:0:0:96:3435:-309.362,-28.8989,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	0/1:149:76,73:76:2724:73:2624:-191.553,0,-200.55	1/1:148:0,148:0:0:148:5281:-475.427,-44.5524,0	1/1:43:0,43:0:0:43:1528:-137.812,-12.9443,0	0/1:15:9,6:9:315:6:216:-15.2751,0,-24.1718	0/1:114:49,65:49:1760:65:2324:-175.103,0,-124.366	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:116:0,116:0:0:116:4162:-374.762,-34.9195,0	1/1:29:1,28:1:36:28:1008:-87.5313,-5.22717,0	0/1:39:27,12:27:968:12:432:-27.481,0,-75.6972	0/1:91:57,34:57:2031:34:1220:-82.7131,0,-155.668	0/1:81:50,31:50:1787:31:1116:-76.3683,0,-136.728	1/1:180:0,180:0:0:180:6447:-580.274,-54.1854,0	0/1:82:50,32:50:1787:32:1148:-78.942,0,-136.427	0/1:182:85,97:85:3060:97:3484:-258.983,0,-220.84	1/1:129:0,129:0:0:129:4622:-416.141,-38.8329,0	0/1:11:9,2:9:324:2:68:-3.14638,0,-26.1945	0/1:139:75,64:75:2684:64:2285:-164.067,0,-199.962	0/1:65:34,31:34:1224:31:1108:-80.464,0,-90.9001	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:162:92,70:92:3304:70:2512:-177.565,0,-248.811	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:18:9,9:9:320:9:324:-24.0873,0,-23.7238	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	1/1:62:0,62:0:0:62:2211:-199.254,-18.6639,0	0/1:78:43,35:43:1520:35:1260:-90.2251,0,-113.61	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:233:0,233:0:0:233:8306:-747.546,-70.14,0	0/1:145:67,78:67:2400:78:2780:-206.79,0,-172.607	0/1:37:24,13:24:864:13:468:-31.3215,0,-66.9445	1/1:105:0,105:0:0:105:3758:-338.418,-31.6082,0	0/1:132:70,62:70:2495:62:2228:-161.048,0,-185.067	0/1:145:89,56:89:3192:56:2012:-137.704,0,-243.854	0/1:16:8,8:8:269:8:284:-21.0869,0,-19.7196	1/1:49:0,49:0:0:49:1737:-156.613,-14.7505,0	0/1:47:35,12:35:1256:12:432:-25.0728,0,-99.1969	0/1:43:26,17:26:936:17:612:-42.4691,0,-71.6152	0/1:82:32,50:32:1139:50:1796:-137.238,0,-78.1339	0/1:66:23,43:23:820:43:1537:-118.755,0,-54.2545	0/1:80:41,39:41:1467:39:1392:-101.496,0,-108.243	1/1:252:1,250:1:36:250:8943:-801.251,-72.3201,0	1/1:74:0,74:0:0:74:2644:-238.207,-22.2762,0	0/1:113:66,47:66:2363:47:1688:-118.191,0,-178.911	0/1:29:21,8:21:756:8:288:-17.5375,0,-59.6374	0/1:133:73,60:73:2620:60:2137:-152.559,0,-196.01	1/1:98:0,98:0:0:98:3495:-314.761,-29.5009,0	1/1:197:1,195:1:27:195:6965:-624.169,-56.617,0	0/1:41:23,18:23:824:18:639:-45.496,0,-62.1411	0/1:59:33,26:33:1184:26:932:-66.4381,0,-89.1075	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:87:0,87:0:0:87:3111:-280.216,-26.1896,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:50:24,26:24:864:26:932:-69.1474,0,-63.0311	0/1:36:17,19:17:612:19:684:-51.0532,0,-44.5764	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:72:40,32:40:1431:32:1148:-81.9557,0,-107.413	0/1:43:32,11:32:1143:11:392:-22.6758,0,-90.2344	1/1:188:1,187:1:36:187:6695:-599.027,-52.9954,0	1/1:69:0,69:0:0:69:2475:-223.003,-20.7711,0
chr11	3294481	.	A	G	15659.1	PASS	AB=0.348517;ABP=668.131;AC=49;AF=0.260638;AN=188;AO=1180;CIGAR=1X;DP=6535;DPB=6535;DPRA=1.04021;EPP=2565.35;EPPR=11631.2;GTI=10;LEN=1;MEANALT=1;MQM=59.9534;MQMR=59.975;NS=94;NUMALT=1;ODDS=1.1565;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41573;QR=189893;RO=5355;RPL=0;RPP=2565.35;RPPR=11622.6;RPR=1180;RUN=1;SAF=0;SAP=2565.35;SAR=1180;SRF=1;SRP=11622.6;SRR=5354;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:13,2:13:464:2:68:-1.94226,0,-37.5821	0/1:51:43,8:43:1531:8:284:-10.5508,0,-122.73	0/1:79:70,9:70:2479:9:320:-5.36099,0,-199.583	0/1:106:78,28:78:2796:28:989:-57.4128,0,-219.971	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:34:34,0:34:1188:0:0:0,-10.235,-107.222	0/1:54:41,13:41:1459:13:464:-25.8419,0,-115.35	0/1:85:58,27:58:2034:27:953:-60.4958,0,-157.744	0/1:53:44,9:44:1568:9:315:-12.7326,0,-125.457	0/1:117:74,43:74:2629:43:1538:-103.492,0,-201.409	0/0:50:50,0:50:1770:0:0:0,-15.0515,-159.582	0/1:70:35,35:35:1213:35:1218:-88.8472,0,-88.3987	0/1:70:44,26:44:1548:26:915:-61.5935,0,-118.54	0/0:71:71,0:71:2488:0:0:0,-21.3731,-224.163	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.939	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:73:44,29:44:1530:29:1011:-69.3252,0,-116.013	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/1:33:12,21:12:432:21:756:-58.4332,0,-29.2872	0/1:69:55,14:55:1939:14:496:-24.2032,0,-154.015	0/1:88:61,27:61:2163:27:938:-58.2395,0,-168.446	0/1:57:39,18:39:1388:18:642:-40.8633,0,-108.06	0/1:39:34,5:34:1212:5:180:-4.8119,0,-97.6462	0/0:60:55,5:55:1952:5:180:0,-1.50973,-159.404	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.374	0/1:196:144,52:144:5100:52:1831:-106.065,0,-400.145	0/0:108:108,0:108:3826:0:0:0,-32.5112,-344.539	0/0:41:41,0:41:1430:0:0:0,-12.3422,-128.994	0/0:217:217,0:217:7712:0:0:0,-65.3235,-694.119	0/1:90:72,18:72:2576:18:629:-29.8411,0,-204.997	0/0:106:103,3:103:3618:3:108:0,-21.834,-315.75	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:148:78,70:78:2733:70:2474:-178.361,0,-201.659	0/0:178:178,0:178:6242:0:0:0,-53.5833,-561.886	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.837	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:59:40,19:40:1432:19:676:-43.4072,0,-111.417	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:92:92,0:92:3276:0:0:0,-27.6948,-295.061	0/0:76:76,0:76:2690:0:0:0,-22.8783,-242.345	0/1:44:20,24:20:716:24:847:-63.3034,0,-51.5224	0/0:38:35,3:35:1244:3:99:0,-2.20256,-103.028	0/1:63:55,8:55:1963:8:288:-7.30252,0,-157.98	0/0:227:223,4:223:7925:4:144:0,-55.0202,-699.965	0/1:90:69,21:69:2451:21:744:-40.1916,0,-193.752	0/1:100:61,39:61:2159:39:1400:-96.1962,0,-164.474	0/0:109:109,0:109:3861:0:0:0,-32.8123,-347.685	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:62:46,16:46:1632:16:567:-32.6969,0,-128.505	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:14:13,1:13:460:1:36:0,-0.616145,-38.1371	0/1:96:83,13:83:2956:13:468:-13.5608,0,-237.373	0/0:41:41,0:41:1435:0:0:0,-12.3422,-129.445	0/1:7:4,3:4:140:3:93:-6.56952,0,-10.8374	0/1:16:13,3:13:456:3:108:-5.25869,0,-36.5568	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.174	0/1:101:47,54:47:1647:54:1884:-139.432,0,-118.113	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:193:193,0:193:6837:0:0:0,-58.0988,-614.629	0/1:133:100,33:100:3584:33:1175:-66.02,0,-282.73	0/1:72:45,27:45:1608:27:964:-65.4027,0,-123.336	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/1:123:84,39:84:2996:39:1363:-85.9251,0,-232.846	0/1:36:16,20:16:564:20:705:-52.9357,0,-40.2532	0/1:18:7,11:7:244:11:373:-28.4781,0,-16.8809	0/0:102:102,0:102:3619:0:0:0,-30.7051,-325.914	0/1:76:35,41:35:1231:41:1451:-108.007,0,-88.215	0/1:15:8,7:8:284:7:248:-18.1487,0,-21.3879	0/1:41:36,5:36:1275:5:165:-2.83137,0,-102.71	0/1:56:27,29:27:968:29:1012:-74.5308,0,-70.5797	0/1:79:52,27:52:1847:27:945:-61.5809,0,-142.728	0/0:142:142,0:142:5053:0:0:0,-42.7463,-454.914	0/0:84:84,0:84:2975:0:0:0,-25.2865,-267.984	0/1:70:39,31:39:1388:31:1093:-77.6056,0,-104.147	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:85:58,27:58:2068:27:951:-60.3174,0,-160.803	0/0:121:121,0:121:4293:0:0:0,-36.4246,-386.549	0/0:139:139,0:139:4970:0:0:0,-41.8432,-447.392	0/1:79:40,39:40:1357:39:1368:-99.6344,0,-98.64	0/1:47:25,22:25:896:22:765:-55.0193,0,-66.8119	0/0:104:103,1:103:3657:1:36:0,-27.7088,-325.736	0/0:161:161,0:161:5710:0:0:0,-48.4658,-514.006	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:74:38,36:38:1347:36:1269:-92.2345,0,-99.2533	0/1:47:25,22:25:883:22:784:-56.7355,0,-65.639	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7683	0/1:84:34,50:34:1185:50:1739:-131.504,0,-81.6659	0/1:55:20,35:20:704:35:1216:-93.1805,0,-47.1279	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:108:108,0:108:3863:0:0:0,-32.5112,-347.819
chr11	3362411	.	A	G	393879	PASS	AB=0.477102;ABP=57.0085;AC=136;AF=0.723404;AN=188;AO=15422;CIGAR=1X;DP=21643;DPB=21643;DPRA=0;EPP=33448;EPPR=13438;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9736;MQMR=59.9902;NS=94;NUMALT=1;ODDS=17.043;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=543723;QR=221884;RO=6219;RPL=4468;RPP=5926.36;RPPR=1880.75;RPR=10954;RUN=1;SAF=4463;SAP=5944.64;SAR=10959;SRF=1942;SRP=1906.75;SRR=4277;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:140:71,69:71:2528:69:2418:-175.728,0,-185.628	0/1:168:90,78:90:3201:78:2800:-201.667,0,-237.74	0/1:225:139,86:139:4935:86:3040:-206.098,0,-376.57	0/1:363:153,210:153:5483:210:7465:-562.625,0,-384.322	1/1:155:1,154:1:36:154:5433:-485.507,-43.0614,0	1/1:90:1,89:1:36:89:3173:-282.196,-23.4944,0	0/1:191:97,94:97:3456:94:3321:-241.61,0,-253.757	0/1:246:117,129:117:4158:129:4579:-338.222,0,-300.159	0/1:295:148,147:148:5253:147:5180:-377.539,0,-384.106	0/1:126:65,61:65:2328:61:2147:-155.565,0,-171.85	1/1:199:0,199:0:0:199:6924:-623.235,-59.905,0	0/1:141:66,75:66:2307:75:2593:-191.174,0,-165.444	0/1:85:31,54:31:1095:54:1892:-144.968,0,-73.2715	1/1:86:0,86:0:0:86:2975:-267.984,-25.8886,0	1/1:68:0,68:0:0:68:2394:-215.717,-20.47,0	1/1:85:0,85:0:0:85:2957:-266.362,-25.5876,0	0/1:66:38,28:38:1360:28:981:-68.7331,0,-102.833	1/1:29:0,29:0:0:29:1006:-90.8491,-8.72987,0	0/1:95:43,52:43:1532:52:1835:-136.832,0,-109.575	0/1:258:137,121:137:4896:121:4237:-303.846,0,-363.127	1/1:234:0,234:0:0:234:8158:-734.247,-70.441,0	0/1:83:58,25:58:2068:25:888:-55.2535,0,-161.406	0/1:258:124,134:124:4390:134:4741:-349.184,0,-317.609	0/1:139:51,88:51:1824:88:3143:-241.252,0,-122.598	1/1:96:1,95:1:21:95:3319:-296.828,-26.7989,0	0/1:436:240,196:240:8595:196:6944:-493.781,0,-642.296	1/1:348:0,348:0:0:348:12315:-1108.2,-104.758,0	1/1:45:0,45:0:0:45:1582:-142.669,-13.5464,0	1/1:333:0,333:0:0:333:11823:-1063.94,-100.243,0	0/1:223:103,120:103:3632:120:4249:-315.461,0,-259.955	1/1:250:1,249:1:36:249:8709:-780.065,-71.6592,0	1/1:814:2,811:2:72:811:28580:-2564.55,-238.26,0	1/1:452:0,452:0:0:452:15975:-1437.45,-136.066,0	1/1:596:1,595:1:36:595:20956:-1881.87,-175.816,0	1/1:1208:6,1202:6:216:1202:42276:-3783.6,-343.854,0	1/1:1158:2,1155:2:72:1155:40767:-3660.89,-341.815,0	0/1:152:78,74:78:2784:74:2607:-189.121,0,-205.045	1/1:94:0,94:0:0:94:3327:-299.648,-28.2968,0	1/1:134:0,134:0:0:134:4698:-422.986,-40.338,0	0/1:573:306,267:306:10974:267:9427:-675.914,0,-815.061	0/1:203:85,118:85:2993:118:4124:-310.238,0,-208.492	1/1:80:0,80:0:0:80:2834:-255.299,-24.0824,0	1/1:272:0,272:0:0:272:9615:-865.312,-81.8802,0	1/1:90:0,90:0:0:90:3157:-284.356,-27.0927,0	0/1:62:24,38:24:849:38:1343:-102.505,0,-58.064	0/1:199:105,94:105:3731:94:3332:-240.137,0,-276.083	0/1:227:115,112:115:4098:112:3990:-290.958,0,-300.672	1/1:241:1,240:1:32:240:8414:-754.077,-69.3489,0	0/1:136:63,73:63:2248:73:2588:-192.228,0,-161.643	0/1:150:72,78:72:2538:78:2751:-202.677,0,-183.517	1/1:186:0,186:0:0:186:6558:-590.308,-55.9916,0	0/1:689:357,332:357:12819:332:11710:-846.375,0,-946.112	1/1:129:0,129:0:0:129:4560:-410.57,-38.8329,0	0/1:151:61,90:61:2171:90:3184:-241.134,0,-150.201	1/1:240:0,240:0:0:240:8495:-764.558,-72.2472,0	0/1:194:101,93:101:3586:93:3303:-239.091,0,-264.547	1/1:124:0,124:0:0:124:4388:-395.093,-37.3277,0	0/1:811:433,378:433:15514:378:13348:-956.728,0,-1151.83	0/1:402:256,146:256:9159:146:5145:-342.181,0,-703.11	1/1:195:1,194:1:36:194:6909:-618.282,-55.1026,0	0/1:77:48,29:48:1688:29:984:-65.685,0,-129.024	0/1:482:265,217:265:9487:217:7620:-540.75,0,-708.689	1/1:39:0,39:0:0:39:1382:-124.677,-11.7402,0	0/1:299:157,142:157:5599:142:5029:-362.751,0,-414.026	0/1:121:46,75:46:1628:75:2646:-201.96,0,-110.384	1/1:134:0,134:0:0:134:4742:-426.941,-40.338,0	0/1:319:164,155:164:5892:155:5423:-392.117,0,-434.359	0/1:213:129,84:129:4623:84:2971:-203.503,0,-352.113	0/1:193:112,81:112:3978:81:2838:-197.533,0,-300.111	1/1:81:0,81:0:0:81:2872:-258.717,-24.3834,0	0/1:50:25,25:25:866:25:869:-63.4724,0,-63.2024	0/1:295:174,121:174:6236:121:4273:-295.926,0,-472.528	0/1:148:80,68:80:2855:68:2398:-171.522,0,-212.635	0/1:96:46,50:46:1639:50:1760:-129.782,0,-118.899	0/1:410:214,196:214:7592:196:6940:-501.248,0,-559.903	1/1:208:0,208:0:0:208:7373:-663.621,-62.6142,0	1/1:215:0,215:0:0:215:7571:-681.437,-64.7215,0	0/1:112:47,65:47:1663:65:2298:-173.365,0,-116.241	0/1:628:387,241:387:13894:241:8551:-580.356,0,-1061.18	0/1:186:98,88:98:3516:88:3100:-223.22,0,-260.658	1/1:131:0,131:0:0:131:4626:-416.506,-39.4349,0	1/1:364:0,364:0:0:364:12908:-1161.55,-109.575,0	0/1:60:21,39:21:748:39:1338:-102.652,0,-49.5835	0/1:82:34,48:34:1199:48:1692:-127.88,0,-83.5303	1/1:63:0,63:0:0:63:2195:-197.814,-18.9649,0	1/1:162:1,161:1:36:161:5654:-505.391,-45.1686,0	1/1:29:0,29:0:0:29:971:-87.6905,-8.72987,0	0/1:108:57,51:57:2002:51:1762:-126.345,0,-147.942	0/1:93:48,45:48:1720:45:1604:-116.654,0,-127.09	1/1:200:0,200:0:0:200:7055:-635.016,-60.206,0	0/1:304:154,150:154:5510:150:5274:-383.287,0,-404.512	0/1:94:67,27:67:2379:27:934:-56.0744,0,-186.071	1/1:27:0,27:0:0:27:939:-84.8199,-8.12781,0	1/1:102:1,101:1:36:101:3549:-316.023,-27.1068,0
chr11	3368981	.	T	C	2.34525e-12	PASS	AB=0.481539;ABP=47.1074;AC=93;AF=0.494681;AN=188;AO=7175;CIGAR=1X;DP=14905;DPB=14905;DPRA=0;EPP=15574.6;EPPR=16768.9;GTI=92;LEN=1;MEANALT=1.09574;MQM=11.0813;MQMR=45.5134;NS=94;NUMALT=1;ODDS=37.9855;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=256852;QR=276270;RO=7721;RPL=0;RPP=15583.3;RPPR=16768.9;RPR=7175;RUN=1;SAF=7174;SAP=15574.6;SAR=1;SRF=7721;SRP=16768.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:19,18:19:684:18:648:-7.04202,0,-50.0868	0/1:214:115,98:115:4105:98:3500:-33.0546,0,-300.948	0/1:173:79,94:79:2825:94:3376:-41.5204,0,-199.598	0/1:288:130,158:130:4646:158:5643:-69.5447,0,-324.314	0/1:57:34,23:34:1224:23:824:-5.87354,0,-91.9964	0/1:57:24,33:24:849:33:1180:-15.7602,0,-58.6889	0/1:243:110,133:110:3922:133:4768:-57.9311,0,-274.756	0/1:205:113,92:113:4011:92:3296:-29.9051,0,-295.421	0/1:141:78,63:78:2793:63:2264:-20.2309,0,-206.142	0/1:219:122,96:122:4338:96:3428:-28.7372,0,-319.296	0/1:160:81,79:81:2900:79:2827:-29.9639,0,-209.329	0/1:135:67,68:67:2389:68:2428:-27.4231,0,-172.127	0/1:132:63,69:63:2268:69:2476:-28.9614,0,-161.491	0/1:188:91,97:91:3249:97:3484:-40.671,0,-232.689	0/1:130:72,58:72:2592:58:2072:-18.2336,0,-191.132	0/1:108:50,58:50:1796:58:2079:-24.9449,0,-127.465	0/1:149:66,83:66:2364:83:2984:-38.2279,0,-165.768	0/1:111:61,50:61:2192:50:1786:-16.8453,0,-161.21	0/1:100:52,48:52:1872:48:1703:-17.4574,0,-136.722	0/1:280:166,114:166:5945:114:4085:-28.1758,0,-443.044	0/1:230:104,125:104:3723:125:4467:-55.0969,0,-260.309	0/1:101:48,53:48:1716:53:1904:-22.9121,0,-122.159	0/1:150:72,78:72:2584:78:2796:-33.1402,0,-182.241	0/1:169:112,56:112:4000:56:1993:-4.69636,0,-305.215	0/1:96:63,33:63:2264:33:1184:-4.99241,0,-170.64	0/1:530:250,280:250:8927:280:10023:-117.616,0,-632.942	0/1:382:207,175:207:7409:175:6292:-60.087,0,-543.252	0/1:92:53,39:53:1900:39:1404:-11.0707,0,-140.988	0/1:330:188,142:188:6709:142:5077:-40.5097,0,-495.546	0/1:322:173,149:173:6181:149:5310:-52.265,0,-453.439	0/1:268:133,135:133:4772:135:4840:-55.0067,0,-342.918	0/0:9:7,2:7:252:2:68:0,-0.434653,-20.5005	0/1:23:16,7:16:572:7:252:-0.108231,0,-44.3008	0/1:3:2,1:2:57:1:36:-0.195648,0,-4.4713	0/1:16:10,6:10:356:6:216:-1.22658,0,-27.2308	0/1:19:11,8:11:392:8:288:-2.30121,0,-29.54	0/1:365:194,171:194:6964:171:6116:-60.0999,0,-508.133	0/1:218:105,113:105:3756:113:4021:-46.6194,0,-268.739	0/1:117:63,54:63:2264:54:1936:-20.451,0,-166.452	0/1:2:1,1:1:21:1:36:-0.496678,0,-1.49658	0/1:173:111,62:111:3957:62:2220:-10.7493,0,-298.441	0/1:90:46,44:46:1656:44:1564:-16.6079,0,-120.628	0/1:157:62,95:62:2232:95:3404:-50.3638,0,-151.729	0/1:178:91,87:91:3268:87:3120:-32.2828,0,-236.795	0/1:146:85,61:85:3051:61:2196:-16.2104,0,-226.473	0/1:189:104,85:104:3721:85:3057:-26.8184,0,-272.813	0/1:165:89,76:89:3185:76:2705:-26.0917,0,-233.894	0/1:91:39,52:39:1396:52:1861:-23.6772,0,-96.8907	0/1:171:83,87:83:2950:87:3112:-34.4076,0,-208.217	0/1:204:104,100:104:3695:100:3576:-37.6654,0,-266.865	0/1:228:118,110:118:4209:110:3939:-43.3875,0,-305.079	0/1:31:13,18:13:464:18:648:-8.66773,0,-32.2145	0/1:259:131,128:131:4696:128:4565:-49.8372,0,-340.318	0/1:119:68,51:68:2428:51:1828:-17.0997,0,-180.062	0/1:27:12,15:12:432:15:536:-6.8133,0,-30.6611	0/1:166:89,77:89:3181:77:2764:-26.3678,0,-231.148	0/1:92:54,38:54:1940:38:1360:-9.80849,0,-144.753	0/1:15:6,9:6:216:9:324:-4.4942,0,-15.0014	0/1:37:19,18:19:684:18:648:-6.77131,0,-49.8715	0/1:92:40,52:40:1417:52:1857:-23.9193,0,-98.1176	0/1:313:153,160:153:5492:160:5750:-63.6522,0,-389.89	0/1:6:2,4:2:72:4:144:-2.25915,0,-4.936	0/1:222:121,100:121:4336:100:3578:-32.0744,0,-317.451	0/1:231:113,118:113:4033:118:4202:-46.4647,0,-286.521	0/1:133:68,64:68:2425:64:2277:-23.3433,0,-176.172	0/1:130:63,67:63:2252:67:2392:-27.4009,0,-161.098	0/1:240:112,128:112:4013:128:4553:-54.1083,0,-284.329	0/1:197:100,97:100:3584:97:3476:-36.5405,0,-257.106	0/1:85:38,47:38:1364:47:1682:-20.9043,0,-96.0698	0/1:163:87,76:87:3128:76:2728:-26.8209,0,-227.681	0/1:157:85,72:85:3052:72:2584:-25.1918,0,-223.81	0/1:73:45,28:45:1611:28:1008:-5.7327,0,-117.112	0/1:191:100,91:100:3573:91:3264:-34.4792,0,-260.587	0/1:128:60,67:60:2148:67:2370:-28.4237,0,-153.012	0/1:311:164,147:164:5817:147:5288:-53.3579,0,-424.102	0/1:237:124,113:124:4445:113:4037:-40.3768,0,-322.984	0/1:119:61,58:61:2154:58:2084:-22.6276,0,-156.333	0/1:170:85,85:85:3052:85:3033:-33.1293,0,-220.705	0/1:17:11,6:11:396:6:216:-0.925547,0,-30.4687	0/1:155:87,68:87:3128:68:2448:-20.6928,0,-231.909	0/1:128:73,55:73:2624:55:1953:-16.3759,0,-195.243	0/1:341:190,151:190:6824:151:5405:-48.6305,0,-503.029	0/1:176:92,84:92:3296:84:2999:-29.8193,0,-239.79	0/1:149:76,73:76:2717:73:2628:-27.5332,0,-196.515	0/1:171:88,83:88:3148:83:2976:-30.8829,0,-227.683	0/1:282:155,127:155:5555:127:4564:-43.7518,0,-408.274	0/1:112:60,52:60:2156:52:1868:-17.9937,0,-158.51	0/1:126:60,66:60:2156:66:2368:-28.9183,0,-154.087	0/1:156:73,83:73:2620:83:2972:-35.7568,0,-186.498	0/1:145:73,72:73:2624:72:2579:-27.8288,0,-190.048	0/1:179:89,90:89:3181:90:3208:-36.5256,0,-229.291	0/1:132:68,64:68:2440:64:2300:-23.8392,0,-177.136	0/1:145:84,61:84:3001:61:2184:-18.1039,0,-222.988	0/1:186:92,93:92:3292:93:3340:-37.0566,0,-236.59
chr11	3369062	.	A	G	97560.9	PASS	AB=0.491282;ABP=15.7703;AC=95;AF=0.505319;AN=188;AO=9501;CIGAR=1X;DP=19333;DPB=19333;DPRA=0;EPP=20099.2;EPPR=20693.6;GTI=1;LEN=1;MEANALT=1.02128;MQM=29.0661;MQMR=28.7963;NS=94;NUMALT=1;ODDS=118.783;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=339165;QR=351305;RO=9830;RPL=9448;RPP=20176.4;RPPR=20830.6;RPR=53;RUN=1;SAF=9;SAP=20556.1;SAR=9492;SRF=16;SRP=21209.8;SRR=9814;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:35,27:35:1248:27:951:-48.955,0,-70.0625	0/1:400:190,210:190:6767:210:7491:-409.763,0,-350.417	0/1:223:115,108:115:4113:108:3851:-206.426,0,-224.534	0/1:463:230,233:230:8236:233:8332:-450.296,0,-427.41	0/1:164:81,83:81:2904:83:2976:-161.308,0,-157.847	0/1:141:78,63:78:2796:63:2238:-116.775,0,-155.731	0/1:279:165,114:165:5924:114:4083:-202.239,0,-335.732	0/1:290:153,137:153:5469:137:4889:-257.417,0,-300.949	0/1:89:42,47:42:1512:47:1647:-91.4653,0,-77.7137	0/1:152:67,85:67:2400:85:3022:-168.719,0,-125.13	0/1:108:58,50:58:2088:50:1796:-93.9329,0,-114.644	0/1:150:72,78:72:2564:78:2787:-152.762,0,-130.693	0/1:125:68,57:68:2432:57:2048:-106.823,0,-130.108	0/1:125:62,63:62:2219:63:2252:-122.192,0,-118.743	0/1:117:47,70:47:1684:70:2499:-142.85,0,-81.0291	0/1:92:54,38:54:1936:38:1360:-68.4256,0,-109.713	0/1:119:61,58:61:2180:58:2061:-109.356,0,-117.707	0/1:88:48,40:48:1715:40:1440:-75.1903,0,-91.945	0/1:74:33,41:33:1172:41:1454:-81.1357,0,-58.366	0/1:728:376,352:376:13422:352:12557:-668.734,0,-702.294	0/1:423:241,182:241:8604:182:6490:-330.934,0,-482.872	0/1:224:130,94:130:4636:94:3376:-164.776,0,-243.942	0/1:199:95,104:95:3408:104:3705:-204.324,0,-174.715	0/1:249:90,159:90:3224:159:5684:-329.122,0,-152.705	0/1:169:74,95:74:2648:95:3378:-188.94,0,-136.58	0/1:573:319,254:319:11405:254:9072:-452.058,0,-596.545	0/1:556:312,244:312:11146:244:8728:-451.569,0,-621.272	0/1:73:29,44:29:1040:44:1580:-89.4642,0,-51.5375	0/1:681:405,276:405:14470:276:9815:-465.994,0,-790.936	0/1:217:125,92:125:4449:92:3312:-167.331,0,-240.428	0/1:324:191,133:191:6844:133:4756:-241.96,0,-383.857	0/1:22:12,10:12:432:10:360:-18.8922,0,-22.8738	0/1:32:22,10:22:783:10:351:-15.4218,0,-46.9821	0/1:7:1,6:1:36:6:216:-13.4087,0,-0.54139	0/1:24:14,10:14:504:10:360:-17.9762,0,-28.526	0/1:18:11,7:11:396:7:248:-12.5474,0,-22.7923	0/1:347:192,155:192:6888:155:5537:-276.414,0,-361.886	0/1:313:164,149:164:5837:149:5300:-280.448,0,-311.884	0/1:106:52,54:52:1851:54:1940:-104.918,0,-98.9121	1/1:6:0,6:0:0:6:207:-15.0524,-1.80618,0	0/1:327:137,190:137:4857:190:6792:-376.6,0,-237.236	0/1:85:48,37:48:1707:37:1316:-68.3706,0,-96.2397	0/1:309:148,161:148:5248:161:5738:-314.998,0,-284.105	0/1:146:67,79:67:2386:79:2836:-156.573,0,-126.912	0/1:118:63,55:63:2260:55:1955:-104.142,0,-123.839	0/1:209:104,105:104:3724:105:3759:-197.037,0,-188.515	0/1:232:103,128:103:3704:128:4581:-252.924,0,-185.717	0/1:315:161,154:161:5749:154:5501:-293.161,0,-311.476	0/1:224:109,115:109:3904:115:4095:-223.512,0,-209.995	0/1:329:160,169:160:5725:169:6050:-334.154,0,-294.471	0/1:290:142,148:142:5084:148:5277:-273.531,0,-261.771	0/1:29:11,18:11:392:18:640:-36.9213,0,-18.6354	0/1:321:173,148:173:6166:148:5300:-276.226,0,-341.306	0/1:112:58,54:58:2076:54:1928:-99.2411,0,-107.858	0/1:34:21,13:21:744:13:464:-22.9654,0,-41.5173	0/1:293:143,150:143:5115:150:5352:-291.738,0,-273.533	0/1:136:73,63:73:2604:63:2239:-115.88,0,-137.091	0/1:23:12,11:12:432:11:392:-20.2049,0,-22.8213	0/1:30:13,17:13:468:17:610:-33.0793,0,-24.0388	0/1:131:70,61:70:2500:61:2161:-114.453,0,-139.205	0/1:181:104,77:104:3728:77:2758:-140.616,0,-197.541	0/1:26:16,10:16:561:10:360:-19.2596,0,-29.6639	0/1:369:167,201:167:5961:201:7153:-381.375,0,-291.707	0/1:370:181,189:181:6456:189:6746:-365.762,0,-346.292	0/1:214:102,112:102:3664:112:4007:-220.978,0,-185.99	0/1:163:68,95:68:2417:95:3382:-191.066,0,-122.721	0/1:481:236,245:236:8398:245:8730:-472.451,0,-434.716	0/1:305:148,157:148:5295:157:5626:-305.668,0,-283.263	0/1:47:24,23:24:856:23:824:-42.9452,0,-45.6037	0/1:143:79,64:79:2828:64:2275:-119.482,0,-157.852	0/1:120:61,59:61:2188:59:2112:-108.71,0,-114.883	0/1:56:34,22:34:1216:22:780:-37.6563,0,-66.0934	0/1:221:109,112:109:3873:112:3999:-216.483,0,-209.591	0/1:156:98,58:98:3520:58:2067:-98.5904,0,-202.749	0/1:307:158,149:158:5647:149:5328:-287.735,0,-308.215	0/1:401:196,205:196:7025:205:7340:-397.077,0,-358.665	0/1:201:89,112:89:3177:112:3969:-221.974,0,-164.956	0/1:202:92,110:92:3300:110:3916:-217.233,0,-163.535	0/1:34:15,19:15:540:19:684:-38.2876,0,-26.6427	0/1:313:139,174:139:4969:174:6227:-346.346,0,-245.494	0/1:327:171,156:171:6078:156:5566:-298.726,0,-328.671	0/1:571:288,283:288:10302:283:10132:-542.173,0,-557.499	0/1:172:81,91:81:2912:91:3251:-177.848,0,-152.031	0/1:119:66,53:66:2368:53:1900:-97.5837,0,-131.566	0/1:191:87,104:87:3116:104:3716:-205.697,0,-159.908	0/1:254:118,136:118:4214:136:4863:-267.71,0,-212.453	0/1:57:30,27:30:1080:27:940:-50.1779,0,-59.683	0/1:132:60,72:60:2139:72:2562:-142.125,0,-107.467	0/1:151:77,74:77:2755:74:2638:-141,0,-144.696	0/1:88:51,37:51:1820:37:1332:-65.7337,0,-103.237	0/1:129:69,60:69:2455:60:2144:-112.841,0,-130.173	0/1:145:71,74:71:2540:74:2639:-141.854,0,-127.5	0/1:231:102,129:102:3628:129:4558:-254.45,0,-187.094	0/1:211:113,98:113:4052:98:3506:-184.925,0,-223.775
chr11	3369074	.	TGAA	TGAG,CGAG	73285.4	PASS	AB=0.391234,0.222552;ABP=2021.43,6994.09;AC=72,21;AF=0.382979,0.111702;AN=188;AO=7685,2327;CIGAR=3M1X,1X2M1X;DP=19674;DPB=19674.5;DPRA=35.5851,38.7259;EPP=16690.8,5056.03;EPPR=20840.5;GTI=6;LEN=1,4;MEANALT=2.09783,2.75556;MQM=29.3042,27.3507;MQMR=28.8795;NS=94;NUMALT=2;ODDS=1.56153;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,72;PQR=0;PRO=0;QA=275105,81971;QR=338259;RO=9596;RPL=7685,2327;RPP=16690.8,5056.03;RPPR=20840.5;RPR=0,0;RUN=1,1;SAF=0,0;SAP=16690.8,5056.03;SAR=7685,2327;SRF=0;SRP=20840.5;SRR=9596;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	0/1:64:27,37,0:27:930:37,0:1315,0:-73.9401,0,-47.9288,-82.0679,-59.0669,-140.858	0/1:410:213,111,85:213:7497:111,85:3988,2952:-185.587,0,-436.038,-74.6228,-294.364,-518.473	0/1:229:111,118,0:111:3910:118,0:4216,0:-230.314,0,-210.976,-263.728,-246.498,-509.946	0/1:474:234,124,115:234:8275:124,115:4456,4056:-207.817,0,-479.828,-40.6855,-279.578,-523.209	0/1:157:80,77,0:80:2851:77,0:2764,0:-149.32,0,-155.189,-173.402,-178.368,-351.488	0/1:146:64,81,0:64:2265:81,0:2896,0:-161.581,0,-116.916,-180.847,-141.299,-322.224	0/1:289:117,172,0:117:4119:172,0:6160,0:-350.249,0,-204.392,-385.469,-256.17,-641.36	0/1:292:141,147,1:141:4984:147,1:5264,36:-286.739,0,-266.977,-327.101,-309.146,-638.013	0/1:91:46,23,22:46:1618:23,22:824,773:-37.1527,0,-94.6328,-4.68622,-55.2402,-99.6116	0/1:157:86,70,0:86:3010:70,0:2510,0:-131.266,0,-167.836,-157.155,-188.908,-345.994	0/1:111:50,61,0:50:1756:61,0:2183,0:-121.67,0,-91.9085,-136.722,-110.271,-246.713	0/2:151:77,35,39:77:2711:35,39:1260,1368:-57.0225,-2.80609,-163.076,0,-93.4075,-159.055	0/2:127:60,30,36:60:2128:30,36:1076,1293:-56.8703,-7.75394,-131.819,0,-65.9139,-122.248	0/1:126:63,63,0:63:2216:63,0:2268,0:-122.389,0,-120.124,-141.354,-139.089,-280.162	0/1:117:69,27,20:69:2444:27,20:972,709:-38.5558,0,-145.263,-17.8764,-111.937,-165.237	0/1:93:38,55,0:38:1341:55,0:1971,0:-112.253,0,-67.6046,-123.692,-84.1613,-207.573	0/1:121:58,63,0:58:2043:63,0:2251,0:-120.413,0,-108.51,-137.873,-127.475,-265.072	0/1:88:42,25,21:42:1470:25,21:896,755:-43.1503,0,-85.0898,-12.0754,-48.8943,-98.3584	0/1:75:41,19,15:41:1457:19,15:676,513:-29.1762,0,-85.3742,-11.0161,-60.5896,-97.582	0/2:740:357,179,202:357:12626:179,202:6393,7071:-309.303,-17.1297,-753.552,0,-390.663,-729.487	0/1:426:183,242,0:183:6406:242,0:8671,0:-485.363,0,-328.355,-540.452,-401.204,-941.736	0/2:228:94,41,93:94:3302:41,93:1464,3271:-163.24,-103.211,-292.589,0,-113.392,-173.719	0/1:199:102,59,37:102:3610:59,37:2104,1291:-99.3873,0,-208.286,-53.5141,-149.467,-268.413	0/1:258:165,92,1:165:5837:92,1:3281,36:-154.741,0,-339.505,-202.329,-365.117,-569.212	0/1:172:97,75,0:97:3395:75,0:2692,0:-138.392,0,-191.595,-167.592,-214.172,-381.484	0/2:585:257,136,189:257:9021:136,189:4857,6636:-312.1,-95.1029,-604.069,0,-255.54,-493.004	0/1:559:242,315,0:242:8570:315,0:11250,0:-629.037,0,-442.998,-701.887,-537.822,-1239.74	0/1:74:45,29,0:45:1598:29,0:1044,0:-51.3245,0,-90.9611,-64.8708,-99.6909,-164.282	0/1:697:284,411,0:284:10028:411,0:14699,0:-802.06,0,-479.948,-887.552,-603.671,-1491.14	0/2:227:94,58,74:94:3325:58,74:2084,2599:-124.902,-23.3246,-213.697,0,-77.9552,-185.546	0/1:323:129,192,1:129:4582:192,1:6877,36:-389.094,0,-228.879,-425.925,-284.675,-712.281	0/2:22:10,4,8:10:348:4,8:144,287:-13.6286,-7.68137,-28.3937,0,-12.9527,-19.4977	0/1:31:10,21,0:10:343:21,0:756,0:-45.0457,0,-15.56,-48.056,-21.8816,-69.66	0/1:8:7,1,0:7:248:1,0:36,0:-0.24036,0,-15.6162,-2.34757,-15.9172,-17.9978	0/1:25:10,15,0:10:342:15,0:536,0:-30.6901,0,-17.0248,-33.7004,-21.5403,-54.9663	0/1:18:7,11,0:7:234:11,0:396,0:-22.7923,0,-12.1868,-24.8995,-15.4981,-40.1198	0/1:349:154,109,85:154:5422:109,85:3916,2997:-189.025,0,-296.32,-60.1858,-153.932,-363.724	0/1:319:152,95,71:152:5355:95,71:3404,2505:-167.52,0,-306.208,-65.1247,-186.651,-378.546	0/1:108:54,54,0:54:1920:54,0:1931,0:-103.473,0,-103.677,-119.728,-119.932,-239.381	0/0:6:6,0,0:6:205:0,0:0,0:0,-1.80618,-15.0274,-1.80618,-15.0274,-15.0274	0/2:333:192,65,72:192:6712:65,72:2328,2523:-91.6486,-3.87008,-402.784,0,-272.899,-396.794	0/1:85:38,47,0:38:1355:47,0:1684,0:-94.0891,0,-71.2713,-105.528,-85.4197,-190.666	0/1:315:161,153,0:161:5681:153,0:5497,0:-296.977,0,-310.287,-345.442,-356.344,-701.864	0/1:146:78,67,0:78:2778:67,0:2404,0:-127.449,0,-152.335,-150.929,-172.504,-323.509	0/1:117:57,60,0:57:2009:60,0:2145,0:-116.286,0,-108.781,-133.444,-126.842,-260.007	0/1:211:108,63,40:108:3812:63,40:2243,1418:-103.326,0,-212.674,-54.5867,-150.387,-274.175	0/2:239:130,50,57:130:4619:50,57:1790,2007:-79.2261,-5.25662,-277.755,0,-174.441,-270.378	0/1:327:162,163,0:162:5711:163,0:5808,0:-314.882,0,-308.636,-363.649,-357.704,-721.307	0/1:225:115,110,0:115:4021:110,0:3950,0:-212.574,0,-221.091,-247.192,-254.205,-501.116	0/1:332:162,83,79:162:5738:83,79:2984,2795:-136.186,0,-334.494,-20.3886,-194.911,-356.077	0/1:295:151,144,0:151:5347:144,0:5160,0:-265.202,0,-278.292,-310.658,-321.64,-632.027	0/1:29:18,6,5:18:603:6,5:216,174:-8.01954,0,-36.6511,-3.11643,-28.1286,-40.0539	0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chr11	3369619	.	T	C	29801.7	PASS	AB=0.521443;ABP=14.7442;AC=136;AF=0.731183;AN=186;AO=3764;CIGAR=1X;DP=5177;DPB=5177;DPRA=0;EPP=8176.43;EPPR=3060.44;GTI=8;LEN=1;MEANALT=1.04301;MQM=21.7973;MQMR=23.2628;NS=93;NUMALT=1;ODDS=0.387516;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=134781;QR=50369;RO=1408;RPL=0;RPP=8176.43;RPPR=3060.44;RPR=3764;RUN=1;SAF=3764;SAP=8176.43;SAR=0;SRF=1408;SRP=3060.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:2,3:2:68:3:108:-2.96305,0,-1.7072	0/1:79:39,40:39:1400:40:1440:-32.9307,0,-37.3188	0/1:65:22,43:22:792:43:1544:-40.3737,0,-13.7094	0/1:82:35,47:35:1256:47:1671:-74.2495,0,-53.0854	1/1:15:0,15:0:0:15:540:-29.1583,-4.51545,0	1/1:31:0,31:0:0:31:1116:-44.5028,-9.33193,0	0/1:60:24,36:24:864:36:1285:-55.0078,0,-36.2566	0/1:72:32,40:32:1133:40:1428:-37.1892,0,-26.1006	0/1:24:14,10:14:504:10:360:-6.66426,0,-14.028	0/1:72:27,45:27:972:45:1612:-73.9399,0,-40.0851	1/1:43:0,43:0:0:43:1531:-90.6049,-12.9443,0	0/1:57:25,32:25:900:32:1140:-30.098,0,-20.7831	0/1:58:28,30:28:993:30:1076:-25.7804,0,-25.0224	1/1:71:0,71:0:0:71:2535:-134.1,-21.3731,0	1/1:43:0,43:0:0:43:1531:-91.5128,-12.9443,0	1/1:34:0,34:0:0:34:1220:-65.3211,-10.235,0	0/1:44:19,25:19:680:25:900:-22.5505,0,-17.4317	1/1:34:0,34:0:0:34:1216:-48.6208,-10.235,0	0/1:30:12,18:12:432:18:648:-16.9804,0,-9.08155	0/1:120:60,60:60:2122:60:2156:-91.1179,0,-97.9694	1/1:54:0,54:0:0:54:1944:-106.008,-16.2556,0	0/1:64:48,16:48:1709:16:572:-19.0774,0,-96.897	0/1:33:16,17:16:576:17:612:-26.3602,0,-25.8612	0/1:48:17,31:17:608:31:1116:-45.6189,0,-20.5311	1/1:10:0,10:0:0:10:360:-19.0611,-3.0103,0	0/1:160:80,80:80:2860:80:2868:-138.777,0,-145.106	1/1:112:0,112:0:0:112:3997:-214.953,-33.7154,0	1/1:19:0,19:0:0:19:675:-34.6959,-5.71957,0	1/1:135:1,133:1:36:133:4760:-307.972,-37.8711,0	0/1:99:46,53:46:1644:53:1892:-73.1729,0,-62.8983	1/1:58:0,58:0:0:58:2084:-121.473,-17.4597,0	1/1:3:0,3:0:0:3:108:-6.11282,-0.90309,0	1/1:7:0,7:0:0:7:252:-13.1628,-2.10721,0	1/1:6:0,6:0:0:6:214:-8.41168,-1.80618,0	1/1:6:0,6:0:0:6:216:-8.77683,-1.80618,0	1/1:4:0,4:0:0:4:144:-5.90441,-1.20412,0	0/1:131:63,68:63:2268:68:2427:-120.397,0,-114.117	1/1:130:0,130:0:0:130:4652:-248.387,-39.1339,0	1/1:37:0,37:0:0:37:1302:-51.812,-11.1381,0	0/1:6:4,2:4:144:2:72:-2.34181,0,-6.62562	0/1:110:37,73:37:1332:73:2620:-106.863,0,-42.9144	1/1:31:0,31:0:0:31:1112:-60.5758,-9.33193,0	1/1:50:0,50:0:0:50:1788:-96.7164,-15.0515,0	1/1:21:0,21:0:0:21:752:-44.8065,-6.32163,0	0/1:62:37,25:37:1319:25:892:-34.5748,0,-65.7963	0/1:43:23,20:23:824:20:720:-34.8309,0,-42.4483	0/1:56:23,33:23:809:33:1176:-29.6072,0,-17.8702	1/1:174:0,174:0:0:174:6240:-367.331,-52.3792,0	0/1:58:23,35:23:824:35:1260:-56.4872,0,-35.1165	0/1:83:39,44:39:1404:44:1580:-68.3626,0,-64.9138	1/1:69:0,68:0:0:68:2432:-160.662,-20.47,0	1/1:1:0,1:0:0:1:36:-2.37353,-0.30103,0	1/1:123:1,122:1:36:122:4365:-172.85,-35.332,0	0/1:34:22,12:22:792:12:428:-18.0735,0,-42.7916	1/1:13:0,13:0:0:13:468:-18.0192,-3.91339,0	0/1:87:49,38:49:1730:38:1352:-49.36,0,-71.8736	1/1:25:0,25:0:0:25:892:-51.665,-7.52575,0	0/1:4:2,2:2:72:2:72:-3.82822,0,-3.99466	0/1:15:5,10:5:180:10:360:-19.5868,0,-8.07108	1/1:40:0,40:0:0:40:1421:-76.3631,-12.0412,0	0/1:85:51,34:51:1817:34:1224:-45.0779,0,-87.4108	.:.:.:.:.:.:.:.	1/1:127:0,127:0:0:127:4536:-296.6,-38.2308,0	0/1:105:53,52:53:1885:52:1868:-77.9344,0,-85.1004	0/1:46:23,23:23:828:23:828:-31.031,0,-31.9681	1/1:78:0,76:0:0:76:2724:-158.547,-22.8783,0	0/1:103:36,67:36:1288:67:2393:-109.815,0,-51.1637	0/1:56:32,24:32:1144:24:864:-33.2421,0,-54.4489	0/1:16:12,4:12:424:4:144:-3.26118,0,-18.3908	1/1:46:0,46:0:0:46:1652:-65.5032,-13.8474,0	0/1:77:35,42:35:1260:42:1508:-76.1272,0,-63.0415	0/1:16:11,5:11:396:5:180:-6.10176,0,-20.1748	0/1:51:31,20:31:1112:20:712:-12.9812,0,-31.6469	0/1:23:11,12:11:396:12:432:-10.2903,0,-9.48251	0/1:48:22,26:22:784:26:936:-36.1485,0,-29.7021	1/1:88:0,88:0:0:88:3145:-187.407,-26.4906,0	1/1:61:0,61:0:0:61:2180:-88.2979,-18.3628,0	0/1:86:30,56:30:1080:56:2000:-52.7981,0,-19.8584	0/1:10:2,8:2:72:8:288:-8.63894,0,-0.209581	0/1:66:25,41:25:896:41:1476:-58.7852,0,-30.3719	1/1:67:0,66:0:0:66:2372:-93.979,-19.868,0	1/1:105:0,105:0:0:105:3746:-219.712,-31.6082,0	0/1:70:40,30:40:1432:30:1076:-42.0255,0,-69.6621	0/1:22:15,7:15:540:7:252:-7.50559,0,-28.1757	1/1:49:0,49:0:0:49:1756:-103.194,-14.7505,0	1/1:87:0,87:0:0:87:3120:-181.208,-26.1896,0	1/1:23:0,23:0:0:23:824:-31.7531,-6.92369,0	0/1:50:27,23:27:968:23:824:-18.1352,0,-26.6757	0/1:58:32,26:32:1152:26:936:-19.2331,0,-30.4427	1/1:19:0,19:0:0:19:684:-35.8574,-5.71957,0	0/1:64:28,36:28:1004:36:1296:-49.2965,0,-37.1306	0/1:25:17,8:17:608:8:279:-9.66471,0,-31.0451	1/1:29:0,29:0:0:29:1044:-61.1292,-8.72987,0	1/1:61:0,61:0:0:61:2192:-129.209,-18.3628,0
chr11	3369761	.	ACTC	ACTT,TCTT	92321.2	PASS	AB=0.482339,0.512559;ABP=9.91333,6.50102;AC=136,52;AF=0.723404,0.276596;AN=188;AO=3052,1322;CIGAR=3M1X,1X2M1X;DP=4389;DPB=4389;DPRA=0,1.39686;EPP=6630.34,2873.7;EPPR=5.18177;GTI=1;LEN=1,4;MEANALT=1.71277,2.16071;MQM=59.9423,59.9266;MQMR=60;NS=94;NUMALT=2;ODDS=0.0838462;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=109201,46577;QR=36;RO=1;RPL=0,0;RPP=6630.34,2873.7;RPPR=5.18177;RPR=3052,1322;RUN=1,1;SAF=0,0;SAP=6630.34,2873.7;SAR=3052,1322;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,16,11:0:0:16,11:561,387:-77.5047,-31.8552,-27.0387,-46.0006,0,-42.6893	1/2:20:0,14,6:0:0:14,6:504,205:-58.0951,-16.9582,-12.7438,-41.4837,0,-39.6775	1/2:304:0,147,154:0:0:147,154:5275,5452:-874.473,-444.196,-399.945,-430.39,0,-384.032	1/2:77:0,34,43:0:0:34,43:1216,1525:-223.755,-124.599,-114.364,-99.5115,0,-86.5673	1/1:28:0,28,0:0:0:28,0:990,0:-89.4139,-8.42884,0,-89.4139,-8.42884,-89.4139	1/1:12:0,12,0:0:0:12,0:421,0:-38.1935,-3.61236,0,-38.1935,-3.61236,-38.1935	2/2:12:0,1,11:0:0:1,11:36,383:-34.4448,-31.5064,-31.2053,-3.31133,-0.0140851,0	1/2:70:0,39,31:0:0:39,31:1400,1087:-203.012,-88.8067,-77.0665,-114.559,0,-105.227	1/2:70:0,32,37:0:0:32,37:1137,1300:-198.463,-105.812,-96.1786,-92.6548,0,-81.5167	1/2:25:0,11,14:0:0:11,14:396,493:-72.8034,-40.4884,-37.177,-32.6714,0,-28.457	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/2:55:0,24,31:0:0:24,31:855,1083:-158.137,-88.4449,-81.2201,-70.0455,0,-60.7135	1/2:54:0,29,25:0:0:29,25:1040,891:-157.811,-72.9841,-64.2543,-85.1845,0,-77.6587	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/2:19:0,11,8:0:0:11,8:388,282:-54.9064,-23.3128,-20.0015,-31.946,0,-29.5378	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/2:14:0,12,2:0:0:12,2:428,72:-41.1218,-6.23466,-2.6223,-35.2464,0,-34.6444	1/2:85:0,30,55:0:0:30,55:1076,1958:-247.703,-159.938,-150.908,-88.122,0,-71.5653	1/1:97:0,97,0:0:0:97,0:3480,0:-313.403,-29.1999,0,-313.403,-29.1999,-313.403	1/2:89:0,31,58:0:0:31,58:1112,2009:-254.326,-163.621,-154.289,-91.0594,0,-73.5997	1/2:56:0,24,32:0:0:24,32:860,1142:-163.595,-93.4553,-86.2306,-70.4971,0,-60.8642	1/2:33:0,17,16:0:0:17,16:608,562:-95.6731,-46.0927,-40.9752,-49.9345,0,-45.118	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/2:125:0,69,55:0:0:69,55:2435,1938:-356.127,-157.877,-137.106,-198.34,0,-181.784	1/1:120:0,119,1:0:0:119,1:4258,25:-383.143,-35.8226,0,-381.195,-33.6237,-380.894	1/1:20:0,20,0:0:0:20,0:716,0:-64.7677,-6.0206,0,-64.7677,-6.0206,-64.7677	1/1:157:0,157,0:0:0:157,0:5632,0:-506.999,-47.2617,0,-506.999,-47.2617,-506.999	1/2:43:0,22,20:0:0:22,20:792,686:-120.384,-55.7508,-49.1282,-64.6996,0,-58.679	1/1:45:0,45,0:0:0:45,0:1616,0:-145.73,-13.5464,0,-145.73,-13.5464,-145.73	1/1:6:0,6,0:0:0:6,0:201,0:-18.417,-1.80618,0,-18.417,-1.80618,-18.417	1/1:19:0,19,0:0:0:19,0:674,0:-60.9819,-5.71957,0,-60.9819,-5.71957,-60.9819	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:8:0,8,0:0:0:8,0:288,0:-26.2592,-2.40824,0,-26.2592,-2.40824,-26.2592	1/1:17:0,17,0:0:0:17,0:606,0:-54.8711,-5.11751,0,-54.8711,-5.11751,-54.8711	1/2:87:1,45,41:1:36:45,41:1608,1453:-244.782,-115.426,-104.817,-126.714,0,-117.309	1/1:74:0,74,0:0:0:74,0:2634,0:-237.308,-22.2762,0,-237.308,-22.2762,-237.308	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:62:0,28,34:0:0:28,34:1008,1173:-177.89,-95.6355,-87.2067,-82.6075,0,-72.3725	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:80:0,80,0:0:0:80,0:2840,0:-255.837,-24.0824,0,-255.837,-24.0824,-255.837	1/1:12:0,11,0:0:0:11,0:396,0:-35.6229,-3.31133,0,-35.6229,-3.31133,-35.6229	1/2:32:0,13,19:0:0:13,19:468,669:-93.0061,-54.8165,-50.9031,-38.5463,0,-32.8267	1/2:47:0,25,21:0:0:25,21:900,744:-134.042,-60.6034,-53.0777,-73.4354,0,-67.1138	1/2:51:0,21,30:0:0:21,30:752,1070:-148.909,-87.5815,-81.2598,-61.6846,0,-52.6537	1/1:85:0,84,1:0:0:84,1:3016,36:-271.311,-25.2865,0,-268.373,-21.9893,-268.072	1/2:64:0,28,36:0:0:28,36:993,1278:-185.385,-104.486,-96.057,-81.2537,0,-70.4166	1/2:49:0,31,18:0:0:31,18:1112,633:-142.584,-51.8782,-42.5463,-91.0594,0,-85.6409	1/1:81:0,81,0:0:0:81,0:2912,0:-262.315,-24.3834,0,-262.315,-24.3834,-262.315	1/2:5:0,2,3:0:0:2,3:72,95:-13.8534,-7.96124,-7.35918,-6.23466,0,-5.33157	1/1:64:0,64,0:0:0:64,0:2300,0:-207.261,-19.2659,0,-207.261,-19.2659,-207.261	1/2:26:0,12,14:0:0:12,14:413,473:-72.2205,-38.6761,-35.0638,-33.8855,0,-29.671	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:46:0,23,23:0:0:23,23:824,813:-133.772,-66.5678,-59.6441,-67.5596,0,-60.6359	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:5:0,2,3:0:0:2,3:72,107:-14.9552,-9.07908,-8.47702,-6.23466,0,-5.33157	1/1:31:0,31,0:0:0:31,0:1099,0:-99.211,-9.33193,0,-99.211,-9.33193,-99.211	1/2:50:0,20,30:0:0:20,30:720,1049:-144.348,-85.6817,-79.6611,-59.0217,0,-49.9908	1/2:8:0,1,7:0:0:1,7:36,248:-23.4951,-20.557,-20.256,-3.29724,0,-1.19003	1/1:63:0,63,0:0:0:63,0:2253,0:-203.031,-18.9649,0,-203.031,-18.9649,-203.031	1/2:84:0,36,48:0:0:36,48:1292,1698:-244.045,-138.655,-127.818,-105.747,0,-91.2972	1/2:32:0,19,13:0:0:19,13:680,452:-92.5552,-37.0973,-31.3778,-55.8096,0,-51.8962	1/1:26:0,26,0:0:0:26,0:928,0:-83.8383,-7.82678,0,-83.8383,-7.82678,-83.8383	1/2:61:0,32,29:0:0:32,29:1152,1021:-177.473,-83.4715,-73.8385,-94.3572,0,-85.6273	1/2:98:0,39,58:0:0:39,58:1400,2033:-279.625,-165.422,-153.682,-114.199,0,-96.7395	1/2:11:0,7,4:0:0:7,4:252,143:-32.5808,-12.0173,-9.91011,-20.9217,0,-19.7176	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/2:32:0,18,14:0:0:18,14:644,501:-93.7267,-41.2123,-35.7938,-52.8721,0,-48.6576	1/2:10:0,3,7:0:0:3,7:108,251:-29.6433,-20.8306,-19.9276,-9.17208,0,-7.06487	1/2:42:0,32,10:0:0:32,10:1140,342:-121.031,-28.0995,-18.4666,-93.2762,0,-90.2659	1/2:45:0,23,22:0:0:23,22:824,779:-131.014,-63.81,-56.8863,-67.5596,0,-60.937	1/2:79:0,35,41:0:0:35,41:1247,1429:-217.861,-116.215,-105.679,-101.651,0,-89.3085	1/1:73:0,72,1:0:0:72,1:2576,36:-231.73,-21.6742,0,-228.792,-18.3769,-228.491	1/1:104:0,104,0:0:0:104,0:3718,0:-334.713,-31.3071,0,-334.713,-31.3071,-334.713	1/2:63:0,27,35:0:0:27,35:968,1235:-179.589,-100.635,-92.5071,-79.0268,0,-68.4907	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/2:55:0,26,29:0:0:26,29:921,1039:-160.117,-85.0941,-77.2673,-75.3784,0,-66.6486	1/1:43:0,42,1:0:0:42,1:1512,25:-136.122,-12.6433,0,-134.175,-10.4444,-133.874	1/1:73:0,72,1:0:0:72,1:2554,36:-229.748,-21.6742,0,-226.81,-18.3769,-226.509	1/2:30:0,16,14:0:0:16,14:576,501:-88.212,-41.2122,-36.3957,-47.3585,0,-43.1441	1/2:48:0,29,19:0:0:29,19:1044,682:-141.176,-55.9903,-47.2605,-85.5449,0,-79.8254	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/1:74:0,73,0:0:0:73,0:2616,0:-235.409,-21.9752,0,-235.409,-21.9752,-235.409	1/1:11:0,11,0:0:0:11,0:387,0:-35.1659,-3.31133,0,-35.1659,-3.31133,-35.1659	1/2:33:0,15,18:0:0:15,18:540,639:-96.4778,-52.4143,-47.8988,-44.4211,0,-39.0025	1/2:35:0,19,16:0:0:19,16:680,553:-100.737,-45.2789,-39.5593,-55.8096,0,-50.9931	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:55:0,30,25:0:0:30,25:1076,891:-160.749,-72.9842,-63.9533,-88.122,0,-80.5962	1/2:31:0,7,24:0:0:7,24:252,862:-91.2398,-70.6777,-68.5704,-20.9217,0,-13.697	1/1:41:0,41,0:0:0:41,0:1453,0:-131.065,-12.3422,0,-131.065,-12.3422,-131.065	1/1:54:0,54,0:0:0:54,0:1944,0:-175.236,-16.2556,0,-175.236,-16.2556,-175.236
chr11	3408176	.	G	A	32086.7	PASS	AB=0.492651;ABP=4.79763;AC=53;AF=0.281915;AN=188;AO=1895;CIGAR=1X;DP=6952;DPB=6952;DPRA=1.16905;EPP=3963.09;EPPR=9997.53;GTI=0;LEN=1;MEANALT=1.01754;MQM=54.0127;MQMR=59.6309;NS=94;NUMALT=1;ODDS=4.39723;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67745;QR=179730;RO=5056;RPL=1878;RPP=3971.62;RPPR=9997.53;RPR=17;RUN=1;SAF=1894;SAP=4109.27;SAR=1;SRF=5056;SRP=10982;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:30:20,10:20:720:10:356:-23.2519,0,-56.0449	0/1:57:29,28:29:1044:28:996:-71.7404,0,-77.0803	0/1:108:63,45:63:2237:45:1616:-112.476,0,-169.081	0/1:96:44,52:44:1572:52:1860:-138.641,0,-112.873	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:50:49,1:49:1752:1:36:0,-11.465,-154.345	0/1:48:19,29:19:676:29:1033:-78.7033,0,-46.7161	0/1:143:64,79:64:2280:79:2836:-210.161,0,-162.08	0/1:76:43,33:43:1498:33:1176:-82.7574,0,-112.173	0/1:43:23,20:23:820:20:716:-51.6053,0,-61.1757	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.845	0/1:93:47,46:47:1661:46:1652:-120.162,0,-121.745	0/1:75:38,37:38:1315:37:1324:-96.2981,0,-96.0102	0/0:60:60,0:60:2140:0:0:0,-18.0618,-192.836	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.655	0/0:64:64,0:64:2258:0:0:0,-19.2659,-203.472	0/1:40:23,17:23:807:17:612:-43.1951,0,-60.908	0/0:35:35,0:35:1199:0:0:0,-10.536,-108.181	0/1:18:11,7:11:388:7:248:-17.184,0,-29.8317	0/1:115:60,55:60:2152:55:1964:-142.289,0,-159.301	0/0:146:146,0:146:5202:0:0:0,-43.9504,-468.184	0/1:121:41,80:41:1455:80:2860:-221.064,0,-94.8182	0/1:81:39,42:39:1386:42:1504:-111.162,0,-100.654	0/1:47:22,25:22:771:25:896:-66.6933,0,-55.5512	0/0:52:52,0:52:1846:0:0:0,-15.6536,-166.37	0/1:185:91,94:91:3234:94:3384:-248.813,0,-235.581	0/0:135:135,0:135:4803:0:0:0,-40.639,-432.347	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.5081	0/0:162:162,0:162:5791:0:0:0,-48.7669,-521.301	0/1:140:72,67:72:2562:67:2400:-173.722,0,-188.613	0/0:84:84,0:84:2977:0:0:0,-25.2865,-268.12	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0303	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:11:11,0:11:387:0:0:0,-3.31133,-34.6046	0/1:160:92,68:92:3276:68:2448:-172.022,0,-246.033	0/0:182:182,0:182:6455:0:0:0,-54.7875,-580.452	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:131:83,48:83:2964:48:1724:-115.481,0,-227.388	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.305	0/0:103:103,0:103:3652:0:0:0,-31.0061,-328.674	0/0:47:47,0:47:1664:0:0:0,-14.1484,-150.047	0/1:69:38,31:38:1343:31:1112:-79.5468,0,-100.392	0/1:127:70,57:70:2500:57:2040:-145.38,0,-186.957	0/1:83:41,42:41:1476:42:1504:-108.828,0,-108.133	0/0:157:154,3:154:5486:3:108:0,-37.1938,-483.766	0/1:53:35,18:35:1260:18:644:-42.193,0,-97.7447	0/1:70:37,33:37:1309:33:1161:-83.6432,0,-96.9544	0/0:47:47,0:47:1663:0:0:0,-14.1484,-149.946	1/1:5:0,5:0:0:5:176:-16.1745,-1.50515,0	0/0:87:86,1:86:3059:1:36:0,-22.6031,-271.951	0/1:69:43,26:43:1529:26:928:-63.0446,0,-117.128	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/1:120:70,50:70:2512:50:1784:-124.28,0,-190.171	0/0:36:35,1:35:1256:1:36:0,-7.24391,-109.728	0/1:13:5,8:5:180:8:269:-20.561,0,-12.6387	0/1:9:6,3:6:216:3:104:-6.99128,0,-17.0812	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/1:101:53,48:53:1882:48:1715:-123.014,0,-139.235	1/1:5:0,5:0:0:5:180:-16.5401,-1.50515,0	0/0:179:179,0:179:6357:0:0:0,-53.8844,-572.205	0/1:129:66,63:66:2372:63:2256:-164.208,0,-174.892	0/1:85:38,47:38:1356:47:1661:-123.374,0,-96.7344	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:117:58,59:58:2076:59:2116:-155.25,0,-151.865	0/1:95:38,57:38:1333:57:2048:-155.816,0,-91.6467	0/1:38:16,22:16:561:22:788:-59.689,0,-39.3673	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:30:14,16:14:489:16:567:-42.3132,0,-35.2998	0/1:8:2,6:2:72:6:216:-17.368,0,-4.42848	0/1:70:36,34:36:1288:34:1224:-88.8184,0,-95.1515	0/1:41:15,26:15:536:26:916:-70.161,0,-36.2326	0/1:130:71,59:71:2531:59:2101:-149.818,0,-188.907	0/0:144:144,0:144:5121:0:0:0,-43.3483,-460.587	0/0:132:131,1:131:4685:1:36:0,-36.1377,-418.123	0/1:42:18,24:18:648:24:860:-64.834,0,-46.0086	0/1:11:4,7:4:140:7:248:-19.2584,0,-9.63325	0/1:88:37,51:37:1316:51:1824:-137.241,0,-92.1911	0/0:143:143,0:143:5100:0:0:0,-43.0473,-459.082	0/0:188:187,1:187:6696:1:36:0,-52.998,-599.109	0/1:60:30,30:30:1059:30:1068:-78.3042,0,-77.542	0/1:69:34,35:34:1194:35:1256:-92.3745,0,-86.9927	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.469	0/0:133:133,0:133:4671:0:0:0,-40.037,-419.513	0/0:27:27,0:27:936:0:0:0,-8.12781,-84.5307	0/1:68:29,39:29:1022:39:1374:-102.887,0,-71.8208	0/1:58:27,31:27:917:31:1104:-81.9003,0,-65.3432	0/0:33:33,0:33:1147:0:0:0,-9.93399,-103.522	0/1:96:54,42:54:1897:42:1496:-105.523,0,-142.067	0/1:54:23,31:23:800:31:1112:-84.0622,0,-56.0539	0/0:94:94,0:94:3353:0:0:0,-28.2968,-301.973	0/0:99:99,0:99:3532:0:0:0,-29.802,-318.087
chr11	3409802	.	C	G	115757	PASS	AB=0.458546;ABP=73.2231;AC=137;AF=0.728723;AN=188;AO=5659;CIGAR=1X;DP=8213;DPB=8213;DPRA=0;EPP=12291.4;EPPR=5542.44;GTI=3;LEN=1;MEANALT=1.03191;MQM=59.944;MQMR=59.9886;NS=94;NUMALT=1;ODDS=0.0878482;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202016;QR=91076;RO=2551;RPL=5659;RPP=12291.4;RPPR=5542.44;RPR=0;RUN=1;SAF=0;SAP=12291.4;SAR=5659;SRF=0;SRP=5542.44;SRR=2551;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:33,36:33:1184:36:1267:-93.5595,0,-86.0972	0/1:84:41,43:41:1468:43:1548:-114.327,0,-107.13	0/1:142:79,63:79:2817:63:2241:-159.206,0,-211.022	0/1:193:106,86:106:3765:86:3080:-219.262,0,-280.893	1/1:62:1,61:1:36:61:2173:-192.236,-15.0656,0	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	0/1:88:48,40:48:1705:40:1436:-103.047,0,-127.243	0/1:135:59,76:59:2097:76:2709:-203.413,0,-148.359	0/1:70:25,45:25:896:45:1612:-124.298,0,-59.8883	0/1:44:23,21:23:824:21:756:-55.1219,0,-61.238	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:55:21,34:21:739:34:1220:-93.5502,0,-50.2757	0/1:43:22,21:22:788:21:756:-55.4147,0,-58.3005	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:55:0,55:0:0:55:1958:-176.494,-16.5567,0	0/1:23:15,8:15:540:8:288:-19.2565,0,-42.0128	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:142:81,61:81:2912:61:2177:-153.448,0,-219.568	1/1:142:0,142:0:0:142:5027:-452.576,-42.7463,0	0/1:147:110,37:110:3933:37:1324:-75.2107,0,-309.905	0/1:191:98,93:98:3497:93:3336:-242.96,0,-257.443	0/1:52:21,31:21:744:31:1112:-84.7378,0,-51.6308	1/1:96:0,96:0:0:96:3397:-305.944,-28.8989,0	0/1:261:124,136:124:4444:136:4880:-360.76,0,-321.542	1/1:210:0,210:0:0:210:7495:-674.568,-63.2163,0	1/1:11:0,11:0:0:11:388:-35.254,-3.31133,0	1/1:225:0,225:0:0:225:8045:-724.07,-67.7318,0	0/1:176:88,88:88:3149:88:3139:-229.754,0,-230.652	1/1:162:0,162:0:0:162:5760:-518.458,-48.7669,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:11:0,11:0:0:11:377:-34.2579,-3.31133,0	1/1:21:0,21:0:0:21:750:-67.8255,-6.32163,0	0/1:123:68,55:68:2427:55:1976:-141.088,0,-181.659	1/1:147:0,147:0:0:147:5255:-473.086,-44.2514,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:99:45,54:45:1604:54:1928:-143.995,0,-114.848	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:219:0,219:0:0:219:7817:-703.56,-65.9256,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:20:12,8:12:417:8:284:-19.8828,0,-31.8396	0/1:118:62,56:62:2209:56:1988:-143.542,0,-163.552	0/1:110:55,55:55:1961:55:1953:-142.931,0,-143.65	1/1:208:0,208:0:0:208:7397:-665.784,-62.6142,0	0/1:66:40,26:40:1428:26:917:-62.9766,0,-108.95	0/1:110:40,70:40:1436:70:2496:-191.78,0,-96.4244	1/1:118:0,118:0:0:118:4228:-380.685,-35.5215,0	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:132:0,132:0:0:132:4717:-424.688,-39.736,0	0/1:128:59,69:59:2108:69:2480:-184.912,0,-151.457	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:167:105,62:105:3745:62:2211:-148.98,0,-286.872	1/1:51:0,51:0:0:51:1824:-164.436,-15.3525,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:17:10,7:10:341:7:244:-17.1819,0,-25.9003	1/1:85:0,85:0:0:85:3037:-273.559,-25.5876,0	0/1:77:32,45:32:1152:45:1616:-122.547,0,-80.8108	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:146:1,145:1:36:145:5186:-463.278,-40.3521,0	0/1:162:87,75:87:3116:75:2692:-193.757,0,-231.9	0/1:48:30,18:30:1072:18:648:-44.2024,0,-82.343	1/1:81:1,80:1:36:80:2860:-254.04,-20.7852,0	0/1:208:96,112:96:3418:112:3992:-296.838,0,-245.217	0/1:279:227,52:227:8084:52:1860:-83.6922,0,-643.589	0/1:21:7,14:7:252:14:500:-39.0145,0,-16.7073	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:45:29,16:29:1044:16:559:-37.0913,0,-80.7285	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:166:101,65:101:3624:65:2320:-159.089,0,-276.391	0/1:87:50,37:50:1781:37:1332:-93.9928,0,-134.381	0/1:201:111,90:111:3938:90:3201:-227.806,0,-294.105	1/1:130:3,127:3:108:127:4530:-397.784,-29.0587,0	1/1:249:1,248:1:36:248:8850:-792.884,-71.3582,0	0/1:74:35,38:35:1237:38:1355:-99.9121,0,-89.2975	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:101:51,50:51:1824:50:1769:-129.087,0,-134.037	1/1:96:0,96:0:0:96:3399:-306.122,-28.8989,0	1/1:206:0,206:0:0:206:7372:-663.491,-62.0122,0	0/1:64:33,31:33:1180:31:1097:-79.7721,0,-87.2421	0/1:39:26,13:26:936:13:468:-30.7195,0,-72.8193	1/1:17:0,17:0:0:17:612:-55.2226,-5.11751,0	1/1:76:0,76:0:0:76:2697:-242.974,-22.8783,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:42:25,17:25:896:17:612:-42.7702,0,-68.3171	0/1:43:27,16:27:972:16:572:-38.8691,0,-74.8536	1/1:28:0,28:0:0:28:1004:-90.6474,-8.42884,0	0/1:67:30,37:30:1072:37:1324:-99.2931,0,-76.6234	0/1:41:24,17:24:860:17:612:-43.0712,0,-65.3796	1/1:129:0,129:0:0:129:4586:-412.905,-38.8329,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0
chr11	3414066	.	TCTCA	TCTCG	37914.1	PASS	AB=0.49604;ABP=3.62936;AC=52;AF=0.27957;AN=186;AO=2272;CIGAR=4M1X;DP=8039;DPB=8039.2;DPRA=1.13374;EPP=4919.24;EPPR=12395.7;GTI=0;LEN=1;MEANALT=1.43636;MQM=59.9996;MQMR=59.9911;NS=93;NUMALT=1;ODDS=0.682432;PAIRED=0;PAIREDR=0;PAO=0.5;PQA=18;PQR=0;PRO=0;QA=80929;QR=202370;RO=5731;RPL=1;RPP=4927.91;RPPR=12404.3;RPR=2271;RUN=1;SAF=2271;SAP=4927.91;SAR=1;SRF=5730;SRP=12439;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:34,21:34:1214:21:735:-49.9148,0,-93.0102	0/1:84:33,50:33:1150:50:1788:-135.857,0,-78.4603	0/1:136:72,64:72:2540:64:2276:-164.163,0,-187.905	0/1:207:108,99:108:3792:99:3523:-254.965,0,-279.169	0/0:35:34,1:34:1201:1:36:0,-6.93777,-104.797	0/0:26:26,0:26:925:0:0:0,-7.82678,-83.568	0/1:88:53,35:53:1860:35:1248:-86.1342,0,-141.188	0/1:113:61,51:61:2148:51:1807:-128.836,0,-159.513	0/1:111:66,45:66:2323:45:1603:-111.145,0,-175.917	0/1:94:49,44:49:1715:44:1574:-113.596,0,-126.277	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.878	0/1:128:65,59:65:2301:59:2107:-152.206,0,-169.66	0/1:89:48,40:48:1713:40:1436:-102.687,0,-127.605	0/0:48:47,1:47:1647:1:36:0,-10.8512,-144.919	0/0:100:100,0:100:3537:0:0:0,-30.103,-318.542	0/0:69:69,0:69:2404:0:0:0,-20.7711,-216.614	0/1:28:13,15:13:462:15:532:-39.7842,0,-33.4876	0/0:28:28,0:28:1006:0:0:0,-8.42884,-90.8562	0/1:42:23,19:23:821:19:676:-48.5247,0,-61.5693	0/1:322:152,169:152:5377:169:6030:-445.815,0,-387.078	0/0:157:154,2:154:5434:2:72:0,-40.3839,-482.411	0/1:97:32,65:32:1108:65:2314:-179.32,0,-70.825	0/1:101:60,40:60:2117:40:1436:-99.0749,0,-160.334	0/1:83:58,25:58:2071:25:892:-55.6142,0,-161.676	0/0:96:93,0:93:3270:0:0:0,-27.9958,-294.162	0/1:202:109,92:109:3792:92:3296:-236.101,0,-280.724	0/0:315:314,0:314:11050:0:0:0,-94.5234,-994.057	0/0:36:36,0:36:1260:0:0:0,-10.8371,-113.701	0/0:311:310,0:310:10960:0:0:0,-93.3193,-985.956	0/1:58:30,26:30:1049:26:928:-66.6627,0,-77.5448	0/0:80:80,0:80:2815:0:0:0,-24.0824,-253.591	0/0:2:2,0:2:67:0:0:0,-0.60206,-6.36284	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:5:5,0:5:177:0:0:0,-1.50515,-16.277	0/0:12:12,0:12:430:0:0:0,-3.61236,-39.0402	0/1:231:113,116:113:4023:116:4096:-299.612,0,-293.044	0/0:90:90,0:90:3164:0:0:0,-27.0927,-284.986	0/0:71:71,0:71:2503:0:0:0,-21.3731,-225.523	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:61:35,26:35:1239:26:923:-65.0239,0,-93.4513	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.652	0/0:115:115,0:115:4069:0:0:0,-34.6184,-366.402	0/0:71:71,0:71:2538:0:0:0,-21.3731,-228.672	0/1:70:39,31:39:1378:31:1112:-79.3192,0,-103.246	0/1:47:21,26:21:709:26:921:-69.0582,0,-49.9746	0/1:117:59,56:59:2094:56:2004:-145.655,0,-153.752	0/0:116:116,0:116:4085:0:0:0,-34.9195,-367.841	0/1:101:37,64:37:1308:64:2279:-174.967,0,-87.6167	0/1:102:43,59:43:1539:59:2112:-159.644,0,-108.098	0/0:111:110,1:110:3926:1:36:0,-29.8161,-349.936	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:105:105,0:105:3688:0:0:0,-31.6081,-332.127	0/1:49:16,33:16:564:33:1172:-91.037,0,-36.3393	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:118:75,42:75:2605:42:1494:-99.3197,0,-199.265	0/0:24:24,0:24:838:0:0:0,-7.22472,-75.7378	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:4:4,0:4:143:0:0:0,-1.20412,-13.2214	0/0:84:84,0:84:2936:0:0:0,-25.2865,-264.477	0/1:131:71,59:71:2495:59:2120:-151.575,0,-185.309	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:158:156,0:156:5482:0:0:0,-46.9607,-493.158	0/1:137:72,64:72:2563:64:2292:-165.31,0,-189.69	0/1:34:15,19:15:529:19:684:-51.6553,0,-37.7066	0/0:87:87,0:87:3088:0:0:0,-26.1896,-278.149	0/1:164:90,74:90:3192:74:2644:-188.838,0,-238.137	0/1:127:27,100:27:952:100:3546:-281.119,0,-47.7642	0/1:38:12,26:12:428:26:928:-72.3991,0,-27.4198	0/0:56:56,0:56:1968:0:0:0,-16.8577,-177.393	0/1:54:24,30:24:855:30:1068:-80.1764,0,-61.0155	0/1:8:5,3:5:175:3:108:-7.66693,0,-13.6849	0/1:54:25,26:25:893:26:923:-67.6958,0,-64.999	0/1:98:33,65:33:1159:65:2307:-178.39,0,-75.1141	0/1:127:75,51:75:2654:51:1805:-124.44,0,-200.817	0/0:115:114,0:114:4072:0:0:0,-34.3174,-366.309	0/0:69:69,0:69:2404:0:0:0,-20.7711,-216.617	0/1:61:21,40:21:743:40:1432:-110.815,0,-48.8312	0/0:5:5,0:5:177:0:0:0,-1.50515,-16.2769	0/1:104:43,61:43:1535:61:2164:-163.718,0,-107.136	0/0:87:85,1:85:2992:1:36:0,-22.6501,-265.915	0/0:174:174,0:174:6163:0:0:0,-52.3792,-554.775	0/1:64:35,29:35:1242:29:1032:-73.9276,0,-92.8186	0/1:65:40,25:40:1420:25:892:-61.0327,0,-108.53	0/0:59:59,0:59:2097:0:0:0,-17.7608,-189	0/0:161:160,0:160:5674:0:0:0,-48.1648,-510.425	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6393	0/1:100:57,43:57:2019:43:1520:-106.99,0,-151.879	0/1:77:38,38:38:1356:38:1348:-98.392,0,-99.1126	0/0:29:29,0:29:1030:0:0:0,-8.72987,-93.0136	0/1:62:40,22:40:1420:22:788:-52.5809,0,-109.434	0/1:97:32,65:32:1133:65:2294:-177.521,0,-72.8492	0/0:139:139,0:139:4872:0:0:0,-41.8432,-438.641	0/0:130:130,0:130:4627:0:0:0,-39.1339,-416.596
chr11	3414121	.	T	G	48457.8	PASS	AB=0.503408;ABP=3.60239;AC=54;AF=0.287234;AN=188;AO=3020;CIGAR=1X;DP=10492;DPB=10492;DPRA=1.21781;EPP=6552.17;EPPR=16208.7;GTI=1;LEN=1;MEANALT=1.01818;MQM=59.996;MQMR=59.9889;NS=94;NUMALT=1;ODDS=1.82096;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104768;QR=266185;RO=7467;RPL=2;RPP=6543.5;RPPR=16200;RPR=3018;RUN=1;SAF=1;SAP=6552.17;SAR=3019;SRF=1;SRP=16208.7;SRR=7466;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:14,12:14:504:12:424:-30.6696,0,-37.8713	0/1:164:75,89:75:2664:89:3108:-230.578,0,-190.638	0/1:152:76,76:76:2716:76:2614:-189.748,0,-198.927	0/1:229:123,106:123:4408:106:3675:-262.022,0,-327.956	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:116:51,65:51:1824:65:2267:-169.373,0,-129.522	0/1:232:104,128:104:3716:128:4414:-327.598,0,-264.803	0/1:112:54,58:54:1920:58:2017:-148.084,0,-139.362	0/1:173:97,76:97:3476:76:2612:-183.248,0,-260.973	0/0:68:65,0:65:2315:0:0:0,-19.5669,-208.279	0/1:95:55,40:55:1943:40:1338:-92.1168,0,-146.548	0/1:90:54,36:54:1919:36:1189:-80.2113,0,-145.894	0/0:96:96,0:96:3377:0:0:0,-28.8989,-304.149	0/0:65:65,0:65:2300:0:0:0,-19.5669,-207.262	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/1:96:51,45:51:1808:45:1555:-111.341,0,-134.103	0/0:84:84,0:84:2988:0:0:0,-25.2865,-269.153	0/1:58:29,29:29:1010:29:1003:-73.1198,0,-73.7498	0/1:297:143,154:143:5106:154:5410:-397.63,0,-370.277	0/0:201:201,0:201:7170:0:0:0,-60.507,-645.358	0/1:124:40,84:40:1424:84:2961:-229.397,0,-91.1298	0/1:48:24,24:24:864:24:838:-61.2869,0,-63.6331	0/1:165:92,73:92:3268:73:2539:-179.089,0,-244.673	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:342:153,189:153:5484:189:6658:-496.343,0,-390.734	0/0:272:271,1:271:9681:1:36:0,-78.2819,-867.644	0/0:55:55,0:55:1956:0:0:0,-16.5566,-176.316	0/0:383:383,0:383:13697:0:0:0,-115.294,-1232.08	0/1:109:64,45:64:2279:45:1542:-106.255,0,-172.559	0/0:100:100,0:100:3553:0:0:0,-30.103,-319.979	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:297:0:0:0,-2.70927,-27.0502	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:244:132,112:132:4705:112:3865:-274.599,0,-350.159	0/0:221:221,0:221:7888:0:0:0,-66.5276,-709.95	0/0:68:68,0:68:2399:0:0:0,-20.47,-216.168	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:177:99,78:99:3536:78:2722:-191.941,0,-265.168	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:157:157,0:157:5592:0:0:0,-47.2617,-503.404	0/0:96:96,0:96:3416:0:0:0,-28.8989,-307.656	0/1:95:46,49:46:1636:49:1663:-121.355,0,-118.931	0/1:83:55,28:55:1972:28:960:-61.7222,0,-152.765	0/1:121:61,59:61:2177:59:2046:-147.923,0,-159.711	0/0:188:188,0:188:6732:0:0:0,-56.5936,-605.954	0/1:137:65,72:65:2324:72:2540:-187.609,0,-168.179	0/1:206:95,111:95:3374:111:3890:-288.284,0,-241.865	0/0:140:139,1:139:4964:1:32:0,-38.9449,-443.711	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/0:165:165,0:165:5896:0:0:0,-49.6699,-530.751	0/1:42:20,22:20:712:22:771:-57.067,0,-51.7634	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:151:67,84:67:2404:84:2865:-212.632,0,-171.161	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.646	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:14:4,10:4:144:10:345:-27.1664,0,-9.0992	0/0:68:68,0:68:2416:0:0:0,-20.47,-217.697	0/1:135:71,64:71:2536:64:2189:-156.636,0,-187.852	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:282:281,1:281:9981:1:36:0,-81.2922,-894.64	0/1:231:107,124:107:3811:124:4327:-320.071,0,-273.651	0/1:82:51,31:51:1828:31:1072:-72.1006,0,-140.116	0/0:74:74,0:74:2640:0:0:0,-22.2762,-237.847	0/1:169:93,76:93:3316:76:2676:-190.208,0,-247.785	1/1:65:6,59:6:212:59:2056:-165.882,-0.142153,0	0/1:23:16,7:16:568:7:235:-14.5543,0,-44.5282	0/0:82:82,0:82:2915:0:0:0,-24.6845,-262.586	0/1:107:63,44:63:2252:44:1489:-102.087,0,-170.733	0/1:25:12,13:12:432:13:452:-33.4848,0,-31.6954	0/1:48:15,33:15:536:33:1124:-87.0087,0,-34.1254	0/1:72:31,41:31:1099:41:1445:-108.669,0,-77.5453	0/1:206:99,107:99:3535:107:3737:-274.522,0,-256.347	0/0:210:210,0:210:7511:0:0:0,-63.2163,-676.032	0/0:135:135,0:135:4816:0:0:0,-40.639,-433.597	0/1:136:73,63:73:2591:63:2226:-159.663,0,-192.499	0/1:7:2,5:2:72:5:161:-12.6993,0,-4.72951	0/1:153:82,71:82:2940:71:2456:-175.236,0,-218.776	0/0:138:138,0:138:4923:0:0:0,-41.5421,-443.136	0/0:173:173,0:173:6179:0:0:0,-52.0782,-555.583	0/1:148:67,81:67:2391:81:2794:-207.148,0,-170.894	0/1:74:33,41:33:1180:41:1408:-104.735,0,-84.2318	0/0:116:116,0:116:4123:0:0:0,-34.9195,-371.257	0/0:201:201,0:201:7143:0:0:0,-60.507,-642.934	0/0:52:52,0:52:1846:0:0:0,-15.6536,-166.419	0/1:92:36,56:36:1279:56:1908:-144.298,0,-87.7177	0/1:85:37,48:37:1320:48:1665:-124.547,0,-93.5144	0/0:41:40,0:40:1432:0:0:0,-12.0412,-128.818	0/1:94:48,46:48:1704:46:1581:-114.281,0,-125.349	0/1:65:21,44:21:748:44:1523:-117.791,0,-48.0783	0/0:176:176,0:176:6269:0:0:0,-52.9813,-564.306	0/0:125:125,0:125:4431:0:0:0,-37.6287,-398.966
chr11	3414198	.	T	C	149752	PASS	AB=0.510635;ABP=8.55252;AC=134;AF=0.712766;AN=188;AO=7184;CIGAR=1X;DP=9969;DPB=9969;DPRA=18.038;EPP=15145.9;EPPR=5843.75;GTI=0;LEN=1;MEANALT=1.04348;MQM=59.9969;MQMR=60;NS=94;NUMALT=1;ODDS=0.331603;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255374;QR=97204;RO=2781;RPL=41;RPP=15248.8;RPPR=5895.12;RPR=7143;RUN=1;SAF=7172;SAP=15498.8;SAR=12;SRF=2775;SRP=5989.87;SRR=6;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:103:50,53:50:1744:53:1872:-137.75,0,-126.238	0/1:66:33,33:33:1154:33:1158:-84.6571,0,-84.2968	0/1:166:72,94:72:2514:94:3347:-251.477,0,-176.543	0/1:236:99,137:99:3454:137:4856:-366.152,0,-240.034	1/1:82:0,82:0:0:82:2922:-263.214,-24.6845,0	1/1:26:0,26:0:0:26:915:-82.6656,-7.82678,0	0/1:144:85,59:85:2996:59:2075:-143.67,0,-226.527	0/1:148:81,67:81:2806:67:2387:-170.534,0,-208.232	0/1:262:122,140:122:4292:140:4976:-369.118,0,-307.596	0/1:114:74,40:74:2608:40:1436:-95.2202,0,-200.653	1/1:63:0,63:0:0:63:2255:-203.212,-18.9649,0	0/1:142:68,74:68:2368:74:2641:-195.189,0,-170.629	0/1:92:39,53:39:1378:53:1889:-142.591,0,-96.6224	1/1:78:0,78:0:0:78:2758:-248.461,-23.4803,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:70:0,70:0:0:70:2492:-224.534,-21.0721,0	0/1:49:26,23:26:928:23:820:-59.372,0,-69.0878	1/1:35:0,35:0:0:35:1232:-111.181,-10.5361,0	0/1:51:19,31:19:676:31:1116:-85.3388,0,-45.7569	0/1:119:54,65:54:1877:65:2308:-172.158,0,-133.385	1/1:240:0,240:0:0:240:8539:-768.513,-72.2472,0	0/1:49:39,10:39:1355:10:360:-17.9938,0,-107.497	0/1:162:70,92:70:2463:92:3274:-246.113,0,-173.159	0/1:40:18,22:18:640:22:792:-59.5645,0,-45.8881	1/1:114:0,114:0:0:114:4067:-366.217,-34.3174,0	0/1:246:142,104:142:4983:104:3698:-258.97,0,-374.576	1/1:351:2,349:2:72:349:12417:-1110.54,-98.8248,0	1/1:53:0,53:0:0:53:1885:-169.927,-15.9546,0	1/1:231:1,230:1:36:230:8154:-730.283,-65.9397,0	0/1:122:58,64:58:2041:64:2277:-168.457,0,-147.235	1/1:243:0,243:0:0:243:8633:-776.968,-73.1503,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:19:0,19:0:0:19:666:-60.2636,-5.71957,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:208:97,111:97:3398:111:3976:-295.416,0,-243.423	1/1:81:0,81:0:0:81:2849:-256.648,-24.3834,0	1/1:71:0,71:0:0:71:2512:-226.331,-21.3731,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:92:55,36:55:1908:36:1265:-86.3973,0,-144.245	1/1:44:0,44:0:0:44:1568:-141.412,-13.2453,0	1/1:144:0,144:0:0:144:5112:-460.225,-43.3483,0	1/1:67:0,67:0:0:67:2386:-214.997,-20.169,0	0/1:54:25,29:25:851:29:958:-70.2658,0,-60.6465	0/1:188:100,88:100:3520:88:3124:-224.792,0,-260.422	0/1:149:81,68:81:2814:68:2407:-172.034,0,-208.65	1/1:170:0,170:0:0:170:6051:-544.694,-51.1751,0	0/1:120:44,76:44:1531:76:2680:-205.321,0,-101.958	0/1:127:56,71:56:1910:71:2533:-189.99,0,-133.946	1/1:169:1,168:1:36:168:6002:-536.687,-47.2758,0	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	1/1:106:0,106:0:0:106:3759:-338.51,-31.9092,0	0/1:92:41,51:41:1443:51:1798:-134.406,0,-102.47	1/1:11:0,11:0:0:11:375:-34.0779,-3.31133,0	0/1:173:78,95:78:2681:95:3359:-250.449,0,-189.462	1/1:94:0,94:0:0:94:3336:-300.457,-28.2968,0	0/1:20:10,10:10:352:10:347:-25.543,0,-25.9976	0/0:10:10,0:10:348:0:0:0,-3.0103,-31.6551	1/1:112:0,112:0:0:112:3949:-355.602,-33.7154,0	0/1:177:92,85:92:3268:85:3047:-221.176,0,-241.06	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:118:2,116:2:72:116:4109:-363.161,-28.6848,0	0/1:172:73,99:73:2554:99:3525:-265.683,0,-178.335	0/1:74:41,33:41:1444:33:1159:-82.3396,0,-107.98	1/1:82:1,81:1:32:81:2867:-255.069,-21.4851,0	0/1:202:100,102:100:3456:102:3643:-267.267,0,-250.45	0/1:95:65,30:65:2217:30:1043:-65.581,0,-171.196	0/1:46:17,29:17:592:29:1029:-79.0738,0,-39.759	1/1:76:0,76:0:0:76:2720:-245.043,-22.8783,0	0/1:54:30,24:30:1037:24:843:-59.9324,0,-77.3814	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:88:44,44:44:1539:44:1576:-115.641,0,-112.31	0/1:89:45,44:45:1568:44:1567:-114.529,0,-114.619	0/1:320:141,179:141:4934:179:6340:-474.365,0,-347.89	1/1:166:1,165:1:36:165:5897:-527.242,-46.3727,0	1/1:79:0,79:0:0:79:2817:-253.768,-23.7814,0	0/1:119:49,70:49:1716:70:2487:-188.261,0,-118.903	0/1:21:7,14:7:239:14:504:-39.3765,0,-15.5211	0/1:104:48,56:48:1679:56:1984:-147.528,0,-120.089	1/1:92:0,92:0:0:92:3284:-295.78,-27.6948,0	1/1:279:0,278:0:0:278:9919:-892.295,-83.6863,0	0/1:69:35,34:35:1239:34:1220:-89.3357,0,-91.0426	0/1:69:33,36:33:1143:36:1283:-95.0016,0,-82.4037	1/1:56:0,56:0:0:56:1990:-179.373,-16.8577,0	1/1:175:1,174:1:36:174:6201:-554.589,-49.082,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	0/1:88:41,47:41:1448:47:1680:-124.996,0,-104.125	0/1:86:41,45:41:1436:45:1594:-117.86,0,-103.647	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:103:42,60:42:1449:60:2152:-162.882,0,-99.6376	0/1:95:65,30:65:2285:30:1076:-68.555,0,-177.313	1/1:150:0,150:0:0:150:5294:-476.597,-45.1545,0	1/1:141:2,139:2:72:139:4954:-439.174,-35.6085,0
chr11	3453460	.	CTTCTTCTTCTTCATCA	CTTCTTCTTCTTCTTCA,CTTTTTCTTCTTCTTCT,CTTTTTCTTCTTCTTCTTCA	148046	PASS	AB=0.475856,0.334359,0.225074;ABP=26.0786,1087.82,2228.61;AC=135,42,11;AF=0.718085,0.223404,0.0585106;AN=188;AO=5563,1527,764;CIGAR=13M1X3M,3M1X9M1X2M1X,1M3I12M1X3M;DP=8055;DPB=8198.18;DPRA=43.2957,1.10858,1.33761;EPP=12082.9,3318.85,1662.02;EPPR=115.927;GTI=6;LEN=1,17,20;MEANALT=3.31183,3.9434,4.5;MQM=59.8353,50.4106,42.0576;MQMR=57;NS=94;NUMALT=3;ODDS=0.370487;PAIRED=0,0,0;PAIREDR=0;PAO=0.5,32,0;PQA=18,1064,0;PQR=18;PRO=0.5;QA=196905,52994,26580;QR=1755;RO=52;RPL=5563,1527,764;RPP=12082.9,3318.85,1662.02;RPPR=115.927;RPR=0,0,0;RUN=1,1,1;SAF=5563,1527,764;SAP=12082.9,3318.85,1662.02;SAR=0,0,0;SRF=52;SRP=115.927;SRR=0;TYPE=snp,complex,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:32:0,17,15,0:0:0:17,15,0:608,529,0:-92.4521,-42.8702,-37.7527,-49.9345,0,-45.4191,-92.4521,-42.8702,-49.9345,-92.4521	1/2:53:0,28,25,0:0:0:28,25,0:992,849,0:-149.117,-68.2973,-59.8685,-80.8119,0,-73.2862,-149.117,-68.2973,-80.8119,-149.117	1/2:72:0,22,49,0:0:0:22,49,0:784,1725,0:-202.974,-139.068,-132.446,-63.9194,0,-49.1689,-202.974,-139.068,-63.9194,-202.974	1/2:261:5,123,68,62:5:155:123,68,62:4387,2353,2155:-533.396,-177.317,-152.73,-345.149,0,-337.119,-364.244,-19.0972,-186.933,-358.02	1/1:47:0,47,0,0:0:0:47,0,0:1692,0,0:-152.409,-14.1484,0,-152.409,-14.1484,-152.409,-152.409,-14.1484,-152.409,-152.409	1/1:45:0,44,1,0:0:0:44,1,0:1571,36,0:-141.313,-13.2453,0,-138.379,-9.95178,-138.078,-141.313,-13.2453,-138.379,-141.313	1/2:99:0,53,29,15:0:0:53,29,15:1872,1008,517:-233.995,-81.5493,-65.5947,-152.454,0,-143.725,-193.337,-40.8922,-111.798,-188.822	1/2:94:0,40,53,0:0:0:40,53,0:1419,1845,0:-264.58,-148.965,-136.923,-115.644,0,-99.6889,-264.58,-148.965,-115.644,-264.58	1/2:57:0,27,27,0:0:0:27,27,0:960,941,0:-153.902,-75.6779,-67.5501,-78.2706,0,-70.1428,-153.902,-75.6779,-78.2706,-153.902	1/2:89:1,43,27,18:1:29:43,27,18:1500,944,606:-195.189,-73.4913,-62.8547,-119.703,0,-113.883,-148.297,-28.6092,-74.8202,-145.187	1/1:81:0,79,0,0:0:0:79,0,0:2810,0,0:-252.691,-23.7814,0,-252.691,-23.7814,-252.691,-252.691,-23.7814,-252.691,-252.691	1/2:120:1,61,56,0:1:36:61,56,0:2163,1928,0:-327.849,-151.924,-136.499,-173.319,0,-159.399,-328.15,-154.862,-176.256,-331.088	1/2:106:1,47,55,0:1:36:47,55,0:1656,1900,0:-284.363,-149.838,-138.628,-131.895,0,-118.276,-284.664,-152.776,-134.832,-287.602	1/1:112:1,107,0,0:1:31:107,0,0:3802,0,0:-339.278,-29.721,0,-339.579,-32.2102,-342.067,-339.579,-32.2102,-342.067,-342.067	1/1:86:0,84,0,0:0:0:84,0,0:2981,0,0:-268.207,-25.2865,0,-268.207,-25.2865,-268.207,-268.207,-25.2865,-268.207,-268.207	1/1:58:2,56,0,0:2:68:56,0,0:1995,0,0:-173.352,-11.002,0,-173.954,-16.8577,-179.469,-173.954,-16.8577,-179.469,-179.469	1/2:51:0,29,20,0:0:0:29,20,0:1040,699,0:-141.22,-56.3866,-47.6567,-84.8532,0,-78.8326,-141.22,-56.3866,-84.8532,-141.22	1/1:57:1,53,0,0:1:34:53,0,0:1883,0,0:-166.312,-13.1833,0,-166.613,-15.9546,-169.371,-166.613,-15.9546,-169.371,-169.371	1/2:30:0,14,16,0:0:0:14,16,0:492,562,0:-85.7841,-45.8228,-41.6084,-40.3112,0,-35.4947,-85.7841,-45.8228,-40.3112,-85.7841	1/3:88:0,40,20,27:0:0:40,20,27:1409,692,951:-190.046,-75.3305,-63.2893,-134.025,-19.3088,-128.005,-114.716,0,-58.6973,-106.589	1/1:135:2,131,0,0:2:65:131,0,0:4596,0,0:-407.641,-34.1814,0,-408.243,-39.4349,-413.489,-408.243,-39.4349,-413.489,-413.489	2/3:41:0,10,15,15:0:0:10,15,15:360,534,516:-83.9361,-54.557,-51.5467,-40.5978,-11.2105,-36.0824,-43.338,-13.958,0,-38.8226	1/2:156:0,75,49,31:0:0:75,49,31:2673,1677,1096:-353.633,-135.751,-113.174,-217.883,0,-203.133,-266.809,-48.9248,-131.062,-257.477	1/3:63:0,27,16,19:0:0:27,16,19:960,557,663:-130.977,-52.7398,-44.6119,-85.7966,-7.55627,-80.9801,-78.2376,0,-33.0592,-72.5181	1/1:55:0,54,0,0:0:0:54,0,0:1908,0,0:-171.716,-16.2556,0,-171.716,-16.2556,-171.716,-171.716,-16.2556,-171.716,-171.716	1/3:239:0,122,51,62:0:0:122,51,62:4338,1754,2135:-521.69,-168.44,-131.714,-380.057,-26.8019,-364.705,-353.252,0,-211.621,-334.589	1/1:241:2,237,0,0:2:72:237,0,0:8376,0,0:-747.03,-65.4293,0,-747.632,-71.3441,-753.507,-747.632,-71.3441,-753.507,-753.507	1/1:22:0,22,0,0:0:0:22,0,0:788,0,0:-71.2402,-6.62266,0,-71.2402,-6.62266,-71.2402,-71.2402,-6.62266,-71.2402,-71.2402	1/1:288:5,280,0,0:5:168:280,0,0:9960,0,0:-880.903,-70.6541,0,-882.408,-84.2884,-896.014,-882.408,-84.2884,-896.014,-896.014	1/2:158:0,72,53,30:0:0:72,53,30:2565,1844,1051:-358.216,-149.412,-127.738,-208.807,0,-192.852,-274.524,-65.7196,-125.116,-265.493	1/1:81:1,78,0,0:1:32:78,0,0:2764,0,0:-245.719,-20.8953,0,-246.02,-23.4803,-248.598,-246.02,-23.4803,-248.598,-248.598	1/1:6:0,6,0,0:0:0:6,0,0:203,0,0:-18.6012,-1.80618,0,-18.6012,-1.80618,-18.6012,-18.6012,-1.80618,-18.6012,-18.6012	1/1:4:0,4,0,0:0:0:4,0,0:140,0,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446,-12.9446,-1.20412,-12.9446,-12.9446	1/1:5:0,5,0,0:0:0:5,0,0:180,0,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521,-16.5521,-1.50515,-16.5521,-16.5521	1/1:5:0,5,0,0:0:0:5,0,0:180,0,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.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chr11	3453483	.	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chr11	3453486	.	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chr11	3482585	.	C	T	1376.38	PASS	AB=0.463453;ABP=25.3903;AC=49;AF=0.269231;AN=182;AO=896;CIGAR=1X;DP=3429;DPB=3429;DPRA=1.07687;EPP=1905.46;EPPR=5457.83;GTI=12;LEN=1;MEANALT=1.01961;MQM=19.2388;MQMR=53.7938;NS=91;NUMALT=1;ODDS=0.349266;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31788;QR=90212;RO=2532;RPL=891;RPP=1905.46;RPPR=5457.83;RPR=5;RUN=1;SAF=896;SAP=1948.65;SAR=0;SRF=2532;SRP=5501.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:14,11:14:486:11:380:-11.4301,0,-36.3369	0/1:41:29,12:29:1011:12:432:-8.62725,0,-78.4367	0/1:49:30,19:30:1068:19:676:-18.4465,0,-80.8191	0/1:57:27,30:27:964:30:1054:-34.583,0,-69.8561	0/0:42:42,0:42:1497:0:0:0,-12.6433,-134.305	0/0:42:42,0:42:1500:0:0:0,-12.6433,-132.525	0/1:54:27,27:27:968:27:964:-30.2251,0,-70.9131	0/1:31:18,13:18:648:13:464:-13.6639,0,-49.1669	0/1:49:24,25:24:852:25:873:-28.8378,0,-61.7014	0/1:44:20,24:20:711:24:860:-28.1397,0,-51.0137	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.1707	0/1:31:13,18:13:468:18:617:-21.6226,0,-33.0097	0/1:38:22,16:22:779:16:568:-16.3164,0,-58.8308	0/0:19:19,0:19:652:0:0:0,-5.71957,-58.673	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.05	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.1426	0/1:33:16,17:16:576:17:608:-19.886,0,-41.8527	0/0:27:27,0:27:968:0:0:0,-8.12781,-86.7477	0/1:10:3,7:3:104:7:244:-9.41064,0,-6.02563	0/1:74:48,26:48:1712:26:927:-22.4753,0,-131.831	0/0:57:57,0:57:2028:0:0:0,-17.1587,-181.749	0/1:55:30,25:30:1063:25:896:-27.231,0,-78.8455	0/1:31:21,10:21:752:10:351:-8.18369,0,-58.6264	0/1:38:26,12:26:928:12:419:-9.64012,0,-72.0906	0/0:50:50,0:50:1775:0:0:0,-15.0515,-159.673	0/1:114:51,63:51:1828:63:2240:-74.0742,0,-130.025	0/0:77:77,0:77:2744:0:0:0,-23.1793,-246.21	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7411	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.273	0/1:52:24,27:24:848:27:960:-30.7507,0,-60.9871	0/0:34:34,0:34:1209:0:0:0,-10.235,-108.758	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4023	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.4459	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	0/0:13:13,0:13:455:0:0:0,-3.91339,-40.0283	0/1:96:51,45:51:1801:45:1603:-48.2629,0,-133.315	0/0:70:70,0:70:2481:0:0:0,-21.0721,-222.691	0/0:21:21,0:21:741:0:0:0,-6.32163,-66.8419	.:.:.:.:.:.:.:.	0/1:56:33,23:33:1180:23:816:-22.8024,0,-89.1246	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.2391	0/0:47:47,0:47:1661:0:0:0,-14.1484,-148.451	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.8977	0/1:20:7,13:7:243:13:455:-16.5273,0,-16.0849	0/1:65:34,31:34:1216:31:1108:-34.1361,0,-90.0064	0/1:33:16,17:16:568:17:608:-19.5351,0,-41.1335	0/0:47:46,1:46:1652:1:36:0,-12.2569,-146.443	0/1:41:30,11:30:1076:11:396:-7.27729,0,-84.654	0/1:45:27,18:27:968:18:644:-17.2742,0,-73.8063	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.005	0/1:4:1,3:1:36:3:108:-4.09216,0,-2.39156	0/0:62:62,0:62:2224:0:0:0,-18.6639,-199.176	0/1:16:13,3:13:464:3:108:-0.479796,0,-37.2697	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6416	0/1:30:9,21:9:320:21:752:-26.8968,0,-20.0688	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.5988	0/1:3:2,1:2:72:1:36:-0.988437,0,-5.87363	0/1:13:7,6:7:248:6:212:-6.47855,0,-18.7449	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.4796	0/1:62:33,29:33:1179:29:1017:-31.1134,0,-86.8741	.:.:.:.:.:.:.:.	0/0:64:64,0:64:2260:0:0:0,-19.2659,-203.386	0/1:51:33,18:33:1176:18:644:-16.1695,0,-90.6417	0/1:24:16,8:16:576:8:284:-6.57202,0,-44.8763	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.6563	0/1:69:49,20:49:1739:20:720:-14.1667,0,-135.501	0/1:33:11,22:11:396:22:780:-27.9373,0,-26.0228	0/1:10:6,4:6:212:4:144:-3.98835,0,-16.3892	0/0:29:29,0:29:1040:0:0:0,-8.72987,-92.5783	0/1:48:29,19:29:1035:19:680:-18.5127,0,-78.9307	0/0:8:7,1:7:244:1:36:0,-0.516713,-20.3932	0/1:64:36,28:36:1284:28:980:-28.8606,0,-95.9485	0/1:25:16,9:16:568:9:316:-8.31489,0,-42.9978	0/1:56:35,21:35:1256:21:738:-19.6208,0,-95.9889	0/0:34:34,0:34:1186:0:0:0,-10.235,-106.916	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.163	0/1:28:13,15:13:464:15:536:-17.8126,0,-33.3838	0/1:6:4,2:4:144:2:72:-1.78772,0,-11.2875	0/1:23:11,12:11:392:12:428:-13.6826,0,-28.6481	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.119	0/0:81:81,0:81:2895:0:0:0,-24.3834,-259.848	0/1:41:16,25:16:576:25:864:-30.3056,0,-39.7029	0/1:21:9,12:9:324:12:423:-14.2464,0,-23.1629	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.287	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.102	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.4832	0/1:27:12,15:12:423:15:540:-18.2125,0,-29.6865	0/1:28:12,16:12:424:16:572:-19.1574,0,-29.7957	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.2909	0/1:27:11,16:11:396:16:563:-20.1013,0,-27.5426	0/1:38:9,29:9:324:29:1036:-38.0963,0,-17.8994	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.803	0/0:63:63,0:63:2236:0:0:0,-18.9649,-199.946
chr11	3482605	.	GCATTA	GCATGA,ACATGC	57912.4	PASS	AB=0.541448,0.449633;ABP=31.4513,45.0088;AC=133,49;AF=0.730769,0.269231;AN=182;AO=2504,859;CIGAR=4M1X1M,1X3M2X;DP=3393;DPB=3393.67;DPRA=0,1.07146;EPP=5440.38,1868.31;EPPR=11.6962;GTI=10;LEN=1,6;MEANALT=1.84615,2.31373;MQM=53.9077,19.0256;MQMR=60;NS=91;NUMALT=2;ODDS=187.167;PAIRED=0,0;PAIREDR=0;PAO=1,2;PQA=36,72;PQR=36;PRO=1;QA=88823,29814;QR=129;RO=4;RPL=2504,859;RPP=5440.38,1868.31;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=2504,859;SAP=5440.38,1868.31;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:27:0,16,11:0:0:16,11:555,364:-60.2872,-15.4774,-10.6609,-45.0613,0,-41.75	1/2:38:0,27,11:0:0:27,11:960,374:-93.4476,-15.4833,-7.35551,-78.2002,0,-74.8889	1/2:50:0,32,17:0:0:32,17:1133,592:-115.061,-23.728,-14.095,-91.3551,0,-86.2376	1/2:56:0,25,29:0:0:25,29:888,989:-112.777,-40.4014,-32.8756,-72.437,0,-63.7071	1/1:40:0,40,0:0:0:40,0:1432,0:-128.429,-12.0412,0,-128.429,-12.0412,-128.429	1/1:40:0,40,0:0:0:40,0:1389,0:-123.902,-12.0412,0,-123.902,-12.0412,-123.902	1/2:54:0,28,26:0:0:28,26:974,924:-115.688,-36.5883,-28.1594,-79.3649,0,-71.5381	1/2:30:0,18,11:0:0:18,11:639,388:-67.4188,-15.3951,-9.97652,-52.0808,0,-48.7695	1/2:48:0,26,22:0:0:26,22:901,772:-103.559,-30.9637,-23.1369,-72.8548,0,-66.2321	1/2:43:0,20,23:0:0:20,23:712,811:-90.3531,-32.3732,-26.3526,-58.2578,0,-51.3341	1/1:14:0,13,0:0:0:13,0:455,0:-40.9083,-3.91339,0,-40.9083,-3.91339,-40.9083	1/2:30:0,13,17:0:0:13,17:468,584:-62.0473,-23.904,-19.9906,-38.4283,0,-33.3108	1/2:36:0,21,15:0:0:21,15:743,525:-81.6338,-21.1733,-14.8516,-60.7177,0,-56.2023	1/1:18:0,18,0:0:0:18,0:648,0:-58.314,-5.41854,0,-58.314,-5.41854,-58.314	1/1:35:0,35,0:0:0:35,0:1260,0:-113.624,-10.5361,0,-113.624,-10.5361,-113.624	1/1:20:0,20,0:0:0:20,0:716,0:-64.6747,-6.0206,0,-64.6747,-6.0206,-64.6747	1/2:33:0,17,16:0:0:17,16:612,552:-72.1457,-22.5165,-17.399,-49.8996,0,-45.0831	1/1:27:0,27,0:0:0:27,0:934,0:-83.9273,-8.12781,0,-83.9273,-8.12781,-83.9273	1/2:9:0,3,6:0:0:3,6:98,213:-16.2601,-8.59076,-7.68767,-7.94302,0,-6.13684	1/2:76:0,49,27:0:0:49,27:1726,939:-178.354,-37.901,-23.1505,-140.7,0,-132.572	1/1:50:0,50,0:0:0:50,0:1766,0:-158.761,-15.0515,0,-158.761,-15.0515,-158.761	1/2:51:0,29,21:0:0:29,21:1032,732:-113.435,-29.3661,-20.6362,-84.1349,0,-77.8133	1/2:31:0,22,9:0:0:22,9:784,311:-76.6528,-12.6778,-6.05513,-64.2115,0,-61.5022	1/2:35:0,24,11:0:0:24,11:860,384:-85.5937,-15.5758,-8.3511,-70.2596,0,-66.9482	1/1:52:0,52,0:0:0:52,0:1843,0:-165.785,-15.6536,0,-165.785,-15.6536,-165.785	1/2:113:0,51,61:0:0:51,61:1828,2133:-234.065,-85.282,-69.9295,-148.813,0,-130.45	1/1:78:0,78,0:0:0:78,0:2788,0:-250.03,-23.4803,0,-250.03,-23.4803,-250.03	1/1:6:0,6,0:0:0:6,0:216,0:-19.7624,-1.80618,0,-19.7624,-1.80618,-19.7624	1/1:83:1,82,0:1:36:82,0:2932,0:-260.436,-21.3872,0,-260.737,-24.6845,-263.675	1/2:48:0,21,27:0:0:21,27:743,938:-98.4501,-37.9498,-31.6281,-60.7816,0,-52.6538	1/1:32:0,32,0:0:0:32,0:1132,0:-101.991,-9.63296,0,-101.991,-9.63296,-101.991	1/1:6:0,6,0:0:0:6,0:212,0:-19.3448,-1.80618,0,-19.3448,-1.80618,-19.3448	1/1:10:0,10,0:0:0:10,0:360,0:-32.5718,-3.0103,0,-32.5718,-3.0103,-32.5718	.:.:.:.:.:.:.:.	1/1:2:0,2,0:0:0:2,0:72,0:-6.81953,-0.60206,0,-6.81953,-0.60206,-6.81953	1/1:13:0,13,0:0:0:13,0:454,0:-40.4472,-3.91339,0,-40.4472,-3.91339,-40.4472	1/2:96:1,51,44:1:36:51,44:1820,1511:-205.963,-58.2302,-45.8189,-145.002,0,-134.695	1/1:70:0,70,0:0:0:70,0:2495,0:-223.876,-21.0721,0,-223.876,-21.0721,-223.876	1/1:21:0,21,0:0:0:21,0:752,0:-67.8281,-6.32163,0,-67.8281,-6.32163,-67.8281	.:.:.:.:.:.:.:.	1/2:56:0,33,22:0:0:33,22:1171,776:-125.641,-30.6398,-20.7058,-94.923,0,-88.3003	1/1:20:0,20,0:0:0:20,0:707,0:-63.6834,-6.0206,0,-63.6834,-6.0206,-63.6834	1/1:46:0,45,0:0:0:45,0:1612,0:-144.713,-13.5464,0,-144.713,-13.5464,-144.713	1/1:26:0,26,0:0:0:26,0:912,0:-82.3379,-7.82678,0,-82.3379,-7.82678,-82.3379	1/2:21:0,6,14:0:0:6,14:212,480:-36.6963,-19.4029,-17.5967,-17.2518,0,-13.0374	1/2:65:0,33,32:0:0:33,32:1180,1107:-141.219,-45.0334,-35.0994,-96.4569,0,-86.8239	1/2:32:0,15,16:0:0:15,16:532,552:-65.5126,-22.3319,-17.8164,-43.2587,0,-38.4423	1/1:45:0,43,1:0:0:43,1:1540,34:-138.037,-12.9443,0,-136.644,-11.6304,-136.343	1/2:39:0,30,9:0:0:30,9:1072,314:-100.153,-12.7745,-3.74362,-87.6063,0,-84.8971	1/2:47:0,28,19:0:0:28,19:992,666:-107.602,-26.7541,-18.3252,-81.1033,0,-75.3837	1/1:65:0,65,0:0:0:65,0:2328,0:-209.492,-19.567,0,-209.492,-19.567,-209.492	1/2:4:0,1,3:0:0:1,3:36,107:-7.36887,-4.39116,-4.09013,-3.29465,0,-2.39156	1/1:61:0,61,0:0:0:61,0:2163,0:-193.821,-18.3628,0,-193.821,-18.3628,-193.821	1/2:16:0,13,3:0:0:13,3:468,104:-42.6951,-4.38151,-0.468125,-38.5344,0,-37.6313	1/1:9:0,9,0:0:0:9,0:324,0:-29.4112,-2.70927,0,-29.4112,-2.70927,-29.4112	1/2:31:0,10,21:0:0:10,21:343,729:-57.3016,-29.4611,-26.4508,-28.133,0,-21.8114	1/1:22:0,22,0:0:0:22,0:788,0:-70.8421,-6.62266,0,-70.8421,-6.62266,-70.8421	1/2:3:0,2,1:0:0:2,1:72,36:-7.52017,-1.5905,-0.988437,-6.17466,0,-5.87363	1/2:13:0,7,6:0:0:7,6:252,202:-29.1817,-8.53365,-6.42644,-20.9153,0,-19.1091	1/1:2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chr11	3492451	.	C	T	47379.9	PASS	AB=0.480974;ABP=21.3543;AC=52;AF=0.276596;AN=188;AO=2813;CIGAR=1X;DP=10304;DPB=10304;DPRA=1.2856;EPP=6042.07;EPPR=15947.5;GTI=0;LEN=1;MEANALT=1;MQM=59.9218;MQMR=59.9893;NS=94;NUMALT=1;ODDS=5.13177;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100751;QR=267629;RO=7490;RPL=2805;RPP=6042.07;RPPR=15947.5;RPR=8;RUN=1;SAF=0;SAP=6111.36;SAR=2813;SRF=0;SRP=16267.3;SRR=7490;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:15,4:15:540:4:144:-7.59405,0,-43.217	0/1:133:55,78:55:1951:78:2800:-212.203,0,-135.828	0/1:204:108,96:108:3864:96:3429:-247.404,0,-286.545	0/1:188:102,86:102:3644:86:3092:-221.912,0,-271.568	0/0:56:56,0:56:1976:0:0:0,-16.8577,-178.112	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:176:99,77:99:3518:77:2754:-195.119,0,-263.849	0/1:224:107,117:107:3815:117:4201:-310.838,0,-276.117	0/1:76:39,37:39:1376:37:1332:-97.3041,0,-101.258	0/1:120:50,70:50:1792:70:2516:-190.568,0,-125.439	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:72:37,35:37:1315:35:1260:-92.0232,0,-96.9769	0/1:54:22,32:22:779:32:1148:-87.3727,0,-54.1764	0/0:103:103,0:103:3654:0:0:0,-31.0061,-329.066	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/1:81:39,42:39:1391:42:1512:-111.991,0,-101.105	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:54:34,20:34:1220:20:720:-48.8732,0,-93.8512	0/1:196:121,75:121:4340:75:2662:-180.816,0,-331.773	0/0:116:116,0:116:4163:0:0:0,-34.9195,-374.851	0/1:162:67,95:67:2400:95:3397:-257.121,0,-167.49	0/1:47:34,13:34:1220:13:468:-28.3112,0,-95.9584	0/1:93:55,38:55:1964:38:1363:-94.9748,0,-149.039	0/0:66:66,0:66:2348:0:0:0,-19.868,-211.58	0/1:387:197,190:197:7046:190:6804:-495.93,0,-517.702	0/0:203:203,0:203:7248:0:0:0,-61.1091,-652.371	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:284:284,0:284:10145:0:0:0,-85.4925,-912.982	0/1:113:59,54:59:2103:54:1921:-139.098,0,-155.522	0/0:88:88,0:88:3143:0:0:0,-26.4906,-283.095	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:175:87,88:87:3124:88:3164:-232.295,0,-228.66	0/0:285:285,0:285:10171:0:0:0,-85.7935,-915.317	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:171:94,77:94:3376:77:2749:-196.176,0,-252.579	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:142:141,0:141:5026:0:0:0,-42.4452,-452.128	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.999	0/1:52:32,20:32:1139:20:716:-49.1142,0,-87.1648	0/1:93:37,56:37:1315:56:2004:-152.633,0,-90.6552	0/1:129:73,56:73:2628:56:2004:-141.8,0,-197.934	0/0:146:145,1:145:5179:1:36:0,-40.3521,-462.652	0/1:156:84,72:84:3003:72:2583:-185.754,0,-223.54	0/1:133:72,61:72:2575:61:2183:-156.691,0,-191.962	0/0:273:273,0:273:9771:0:0:0,-82.1812,-879.336	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:227:226,1:226:8087:1:36:0,-64.7355,-724.249	0/1:87:53,34:53:1895:34:1220:-83.9172,0,-144.638	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/1:179:87,92:87:3086:92:3279:-241.446,0,-224.084	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	0/0:122:122,0:122:4342:0:0:0,-36.7257,-390.957	0/1:173:98,75:98:3503:75:2696:-190.797,0,-263.402	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/0:253:252,1:252:9014:1:36:0,-72.5623,-807.64	0/1:236:123,113:123:4390:113:4029:-291.755,0,-324.23	0/1:71:42,29:42:1504:29:1036:-72.1808,0,-114.281	0/0:134:134,0:134:4795:0:0:0,-40.338,-431.706	0/1:164:69,95:69:2476:95:3400:-256.846,0,-173.724	0/1:170:83,87:83:2972:87:3120:-229.851,0,-216.538	0/1:33:18,15:18:648:15:540:-39.0025,0,-48.7179	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:102:46,56:46:1639:56:2004:-149.918,0,-117.093	0/1:43:30,13:30:1072:13:468:-29.5154,0,-83.8482	0/1:134:79,55:79:2823:55:1968:-137.056,0,-213.971	0/1:87:46,41:46:1644:41:1476:-106.947,0,-122.059	0/1:148:83,65:83:2963:65:2332:-165.587,0,-222.351	0/0:199:199,0:199:7110:0:0:0,-59.905,-639.959	0/0:163:163,0:163:5763:0:0:0,-49.0679,-518.164	0/1:129:68,61:68:2435:61:2176:-157.259,0,-180.572	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/1:128:65,63:65:2340:63:2264:-165.489,0,-172.327	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.062	0/0:213:211,2:211:7498:2:72:0,-57.2827,-668.032	0/1:115:54,61:54:1936:61:2169:-160.856,0,-139.898	0/1:73:37,36:37:1324:36:1288:-94.2469,0,-97.4869	0/0:67:67,0:67:2386:0:0:0,-20.169,-214.997	0/0:140:139,1:139:4974:1:36:0,-38.5459,-444.209	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:63:25,38:25:896:38:1352:-103.012,0,-61.9955	0/1:108:62,46:62:2219:46:1652:-116.457,0,-167.463	0/0:79:79,0:79:2814:0:0:0,-23.7814,-253.499	0/1:151:83,68:83:2963:68:2448:-175.118,0,-221.448	0/1:60:23,37:23:828:37:1324:-101.4,0,-56.7823	0/0:136:135,1:135:4831:1:36:0,-37.3418,-431.34	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278
chr11	3570315	.	G	T	44239.6	PASS	AB=0.488962;ABP=5.88642;AC=135;AF=0.725806;AN=186;AO=3269;CIGAR=1X;DP=4664;DPB=4664;DPRA=0;EPP=7101.55;EPPR=3019.19;GTI=0;LEN=1;MEANALT=1.05376;MQM=35.6393;MQMR=49.833;NS=93;NUMALT=1;ODDS=2.00429;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116895;QR=49350;RO=1389;RPL=3269;RPP=7101.55;RPPR=3019.19;RPR=0;RUN=1;SAF=0;SAP=7101.55;SAR=3269;SRF=0;SRP=3019.19;SRR=1389;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:12,8:12:424:8:288:-20.2096,0,-32.4758	0/1:58:42,16:42:1495:16:576:-34.6413,0,-117.384	0/1:49:20,29:20:708:29:1040:-79.0372,0,-49.2951	0/1:48:24,24:24:847:24:864:-35.0019,0,-59.366	1/1:49:0,49:0:0:49:1748:-102.658,-14.7505,0	1/1:43:1,42:1:36:42:1504:-131.868,-9.34602,0	0/1:76:34,42:34:1191:42:1500:-64.6806,0,-81.0092	0/1:97:57,40:57:2032:40:1417:-98.4512,0,-153.897	0/1:69:31,38:31:1112:38:1368:-102.479,0,-79.6203	0/1:47:27,20:27:968:20:712:-29.5091,0,-69.8535	1/1:27:0,27:0:0:27:964:-56.7376,-8.12781,0	0/1:48:25,23:25:896:23:824:-59.9305,0,-66.5109	0/1:43:21,22:21:748:22:792:-58.5598,0,-54.701	1/1:63:0,63:0:0:63:2252:-131.87,-18.9649,0	1/1:37:0,37:0:0:37:1328:-76.166,-11.1381,0	1/1:11:0,11:0:0:11:377:-23.6016,-3.31133,0	0/1:38:13,24:13:451:24:864:-66.4739,0,-29.4228	1/1:28:0,28:0:0:28:1004:-90.5495,-8.42884,0	0/1:16:7,9:7:252:9:320:-24.2868,0,-18.2125	0/1:84:33,51:33:1176:51:1824:-79.4598,0,-76.9247	1/1:69:0,69:0:0:69:2480:-144.092,-20.7711,0	0/1:80:52,28:52:1839:28:1004:-66.4671,0,-141.707	0/1:27:17,10:17:604:10:356:-13.7785,0,-43.9916	0/1:67:30,37:30:1080:37:1324:-58.4333,0,-73.7075	1/1:49:0,49:0:0:49:1760:-103.239,-14.7505,0	0/1:150:72,78:72:2555:78:2788:-205.524,0,-185.046	1/1:62:0,62:0:0:62:2201:-130.639,-18.6639,0	1/1:11:0,11:0:0:11:392:-22.7613,-3.31133,0	1/1:89:0,89:0:0:89:3180:-284.84,-26.7917,0	0/1:80:38,42:38:1360:42:1485:-65.632,0,-93.105	1/1:62:0,62:0:0:62:2193:-126.874,-18.6639,0	1/1:2:0,2:0:0:2:72:-4.32984,-0.60206,0	1/1:17:0,17:0:0:17:612:-36.4555,-5.11751,0	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	1/1:12:0,12:0:0:12:428:-38.806,-3.61236,0	0/1:98:52,46:52:1851:46:1652:-119.263,0,-137.368	1/1:121:0,121:0:0:121:4328:-256.25,-36.4246,0	1/1:38:0,38:0:0:38:1364:-122.888,-11.4391,0	.:.:.:.:.:.:.:.	0/1:40:20,19:20:698:19:676:-29.5219,0,-48.9559	1/1:13:0,13:0:0:13:468:-27.0613,-3.91339,0	1/1:93:0,93:0:0:93:3344:-198.048,-27.9958,0	1/1:24:0,24:0:0:24:860:-49.5097,-7.22472,0	0/1:32:17,15:17:587:15:536:-22.6098,0,-41.8402	0/1:77:42,35:42:1495:35:1248:-89.2926,0,-111.664	0/1:38:18,20:18:644:20:720:-53.5973,0,-46.8515	1/1:110:1,106:1:36:106:3774:-217.124,-29.081,0	0/1:36:22,14:22:784:14:500:-18.0772,0,-56.7325	0/1:52:26,26:26:920:26:928:-37.8453,0,-64.376	1/1:63:0,63:0:0:63:2252:-202.664,-18.9649,0	0/1:12:10,2:10:360:2:72:-1.96608,0,-27.8235	1/1:60:0,60:0:0:60:2160:-194.391,-18.0618,0	0/1:35:23,12:23:820:12:432:-28.6295,0,-63.5865	1/1:6:0,6:0:0:6:216:-19.7624,-1.80618,0	0/1:26:11,15:11:396:15:536:-23.1385,0,-26.9796	1/1:8:0,8:0:0:8:284:-17.8075,-2.40824,0	0/1:5:1,4:1:36:4:144:-11.7896,0,-2.09312	0/1:23:15,8:15:536:8:284:-18.9469,0,-41.6511	1/1:57:0,57:0:0:57:2005:-122.279,-17.1587,0	0/1:113:66,47:66:2340:47:1688:-63.766,0,-166.617	0/1:4:2,2:2:72:2:72:-3.12572,0,-5.35941	1/1:66:0,66:0:0:66:2368:-213.084,-19.868,0	0/1:151:63,88:63:2235:88:3148:-139.202,0,-145.884	0/1:61:31,30:31:1116:30:1072:-44.5273,0,-77.635	1/1:19:0,19:0:0:19:684:-39.1965,-5.71957,0	0/1:58:34,24:34:1199:24:864:-33.18,0,-86.3714	0/1:71:37,33:37:1328:33:1180:-47.7067,0,-92.6277	0/1:8:6,2:6:216:2:72:-1.9216,0,-16.5915	1/1:37:0,37:0:0:37:1324:-119.297,-11.1381,0	0/1:73:43,30:43:1527:30:1068:-74.3269,0,-115.429	0/1:19:9,10:9:324:10:345:-14.6632,0,-22.7383	0/1:67:36,31:36:1266:31:1116:-80.4398,0,-94.0721	0/1:31:14,17:14:495:17:608:-45.6443,0,-35.5511	0/1:138:56,82:56:1979:82:2920:-134.081,0,-129.521	1/1:69:0,69:0:0:69:2453:-144.85,-20.7711,0	1/1:171:1,170:1:36:170:6092:-544.021,-47.8779,0	0/1:38:21,17:21:739:17:600:-42.8198,0,-55.3932	0/1:3:1,2:1:36:2:72:-5.92394,0,-2.69518	0/1:45:18,27:18:644:27:960:-43.1641,0,-42.734	1/1:39:0,39:0:0:39:1400:-126.122,-11.7402,0	1/1:112:0,112:0:0:112:3993:-233.166,-33.7154,0	0/1:79:38,41:38:1351:41:1472:-61.6956,0,-93.5626	0/1:14:8,6:8:284:6:212:-8.29173,0,-20.7129	1/1:32:0,32:0:0:32:1152:-67.0462,-9.63296,0	1/1:52:0,52:0:0:52:1860:-106.797,-15.6536,0	1/1:24:0,24:0:0:24:864:-77.9761,-7.22472,0	0/1:42:16,26:16:576:26:932:-71.4385,0,-39.5317	0/1:41:29,12:29:1036:12:432:-26.8234,0,-81.2117	1/1:32:0,32:0:0:32:1144:-65.8048,-9.63296,0	0/1:64:31,33:31:1104:33:1188:-52.2048,0,-76.7271	0/1:27:15,12:15:510:12:432:-16.7118,0,-36.5808	1/1:23:0,23:0:0:23:828:-48.589,-6.92369,0	1/1:42:0,42:0:0:42:1512:-88.741,-12.6433,0
chr11	3608285	.	GTCG	ATCG	112253	PASS	AB=0.481041;ABP=16.9254;AC=135;AF=0.718085;AN=188;AO=5447;CIGAR=1X3M;DP=7782;DPB=7782;DPRA=83.6667;EPP=11796.3;EPPR=4732.23;GTI=1;LEN=1;MEANALT=1.26882;MQM=59.953;MQMR=59.9861;NS=94;NUMALT=1;ODDS=0.366697;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=194885;QR=79756;RO=2308;RPL=5443;RPP=11796.3;RPPR=4740.67;RPR=4;RUN=1;SAF=0;SAP=11831;SAR=5447;SRF=1;SRP=5006.09;SRR=2307;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:12,21:12:418:21:752:-58.0723,0,-28.0185	0/1:103:55,47:55:1924:47:1692:-121.502,0,-142.371	0/1:107:53,54:53:1815:54:1935:-142.199,0,-131.418	0/1:190:99,90:99:3422:90:3228:-233.487,0,-250.948	1/1:56:0,56:0:0:56:2010:-181.173,-16.8577,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:77:38,39:38:1330:39:1383:-101.589,0,-96.8199	0/1:124:59,65:59:2048:65:2320:-171.732,0,-147.264	0/1:45:23,21:23:787:21:747:-54.0924,0,-57.6846	0/1:75:37,38:37:1271:38:1364:-100.483,0,-92.1122	1/1:97:0,97:0:0:97:3470:-312.511,-29.1999,0	0/1:54:21,33:21:745:33:1179:-90.1616,0,-51.1189	0/1:70:43,27:43:1474:27:968:-66.3653,0,-111.879	1/1:108:1,105:1:36:105:3739:-333.147,-28.6524,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:48:3,45:3:107:45:1612:-135.388,-4.46727,0	0/1:100:46,54:46:1595:54:1936:-144.413,0,-113.734	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:58:28,30:28:938:30:1072:-79.3327,0,-67.2661	0/1:173:95,77:95:3304:77:2764:-196.888,0,-245.517	1/1:77:0,77:0:0:77:2759:-248.551,-23.1793,0	0/1:128:84,44:84:2883:44:1576:-103.6,0,-221.179	0/1:104:41,63:41:1401:63:2247:-171.186,0,-95.0773	0/1:58:26,32:26:897:32:1144:-85.8098,0,-63.5835	1/1:40:0,37:0:0:37:1324:-119.106,-11.1381,0	0/1:199:103,94:103:3532:94:3360:-242.953,0,-258.439	1/1:125:0,124:0:0:124:4435:-398.961,-37.3277,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:220:0,219:0:0:219:7815:-703.131,-65.9256,0	0/1:118:51,67:51:1738:67:2390:-179.835,0,-121.18	1/1:115:0,115:0:0:115:4114:-370.444,-34.6185,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:145:81,64:81:2837:64:2263:-160.252,0,-211.922	1/1:109:0,109:0:0:109:3868:-348.315,-32.8123,0	1/1:78:1,77:1:33:77:2747:-244.155,-20.1812,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:195:117,77:117:4019:77:2751:-189.072,0,-303.15	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:98:0,98:0:0:98:3504:-315.571,-29.5009,0	1/1:80:0,80:0:0:80:2871:-258.626,-24.0824,0	0/1:55:19,36:19:656:36:1296:-100.381,0,-42.8053	0/1:45:17,28:17:583:28:1000:-76.769,0,-39.2464	0/1:117:60,56:60:2052:56:2004:-145.393,0,-149.711	1/1:163:0,162:0:0:162:5815:-523.151,-48.7669,0	0/1:82:41,41:41:1396:41:1468:-107.732,0,-101.249	0/1:195:97,98:97:3335:98:3491:-255.701,0,-241.675	1/1:95:0,95:0:0:95:3402:-306.395,-28.5979,0	0/1:14:2,12:2:68:12:432:-35.0068,0,-2.24329	1/1:114:0,114:0:0:114:4096:-368.821,-34.3174,0	0/1:71:42,29:42:1479:29:1028:-71.2669,0,-112.032	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:94:52,42:52:1772:42:1487:-105.755,0,-131.464	1/1:44:1,42:1:32:42:1499:-131.994,-10.0549,0	0/1:25:10,15:10:350:15:536:-41.0491,0,-24.311	0/1:7:4,3:4:139:3:108:-7.96796,0,-10.7454	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0	0/1:106:54,52:54:1897:52:1855:-135.32,0,-139.099	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:229:0,228:0:0:228:8114:-729.929,-68.6348,0	0/1:138:82,55:82:2861:55:1976:-136.555,0,-216.189	0/1:58:32,26:32:1094:26:936:-67.0997,0,-81.3038	1/1:80:0,80:0:0:80:2863:-257.907,-24.0824,0	0/1:138:77,61:77:2650:61:2196:-156.363,0,-197.207	0/1:46:26,20:26:880:20:720:-51.2814,0,-65.6616	0/1:49:36,12:36:1223:12:432:-24.4119,0,-95.5483	1/1:34:0,33:0:0:33:1176:-105.624,-9.93399,0	0/1:64:32,32:32:1102:32:1148:-84.3639,0,-80.2185	0/1:15:7,8:7:238:8:288:-21.752,0,-17.2363	0/1:52:15,37:15:528:37:1317:-103.178,0,-32.1975	0/1:44:26,17:26:894:17:597:-40.894,0,-67.6128	0/1:154:86,68:86:2994:68:2436:-173.137,0,-223.338	1/1:132:0,130:0:0:130:4643:-417.717,-39.1339,0	1/1:114:0,113:0:0:113:4051:-364.446,-34.0164,0	0/1:133:71,61:71:2501:61:2191:-157.378,0,-185.397	0/1:19:7,12:7:224:12:432:-33.5016,0,-14.755	0/1:150:77,73:77:2652:73:2601:-189.183,0,-193.774	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0	1/1:128:0,128:0:0:128:4589:-413.149,-38.5318,0	0/1:62:31,31:31:1088:31:1116:-82.0878,0,-79.5649	0/1:75:34,40:34:1160:40:1436:-107.009,0,-82.1684	1/1:92:0,92:0:0:92:3290:-296.319,-27.6948,0	1/1:136:1,135:1:36:135:4848:-432.874,-37.3418,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:70:39,31:39:1347:31:1094:-77.6962,0,-100.455	0/1:66:27,39:27:954:39:1404:-106.791,0,-66.3076	1/1:59:0,59:0:0:59:2110:-190.169,-17.7608,0	0/1:98:46,52:46:1611:52:1864:-138.538,0,-115.778	0/1:50:33,17:33:1154:17:612:-40.3619,0,-89.1139	1/1:50:0,50:0:0:50:1785:-160.931,-15.0515,0	1/1:91:0,91:0:0:91:3272:-294.699,-27.3937,0
chr11	3645409	.	T	A	60719.8	PASS	AB=0.437066;ABP=92.1128;AC=129;AF=0.716667;AN=180;AO=2961;CIGAR=1X;DP=4425;DPB=4425;DPRA=49.7079;EPP=6432.74;EPPR=3182.05;GTI=2;LEN=1;MEANALT=1;MQM=59.998;MQMR=59.9809;NS=90;NUMALT=1;ODDS=0.104078;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105685;QR=52457;RO=1464;RPL=2945;RPP=6294.52;RPPR=3138.76;RPR=16;RUN=1;SAF=16;SAP=6294.52;SAR=2945;SRF=5;SRP=3138.76;SRR=1459;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:32,8:32:1148:8:288:-14.2262,0,-91.5886	0/1:33:19,14:19:684:14:500:-35.4022,0,-51.9563	0/1:65:47,18:47:1680:18:648:-39.0849,0,-131.92	0/1:93:28,65:28:989:65:2320:-181.065,0,-61.3262	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:31:12,19:12:432:19:680:-52.1972,0,-29.8893	0/1:49:31,18:31:1112:18:636:-42.8162,0,-85.6409	0/1:36:26,10:26:932:10:360:-21.9072,0,-73.3618	0/1:60:20,40:20:720:40:1432:-111.116,0,-47.067	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:50:35,15:35:1260:15:536:-33.5233,0,-98.654	0/1:65:43,22:43:1544:22:788:-51.6778,0,-119.686	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:33:1,32:1:36:32:1148:-100.032,-6.33572,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:24:1,23:1:36:23:828:-71.2458,-3.62645,0	0/1:18:6,12:6:212:12:432:-33.8027,0,-14.0063	0/1:51:28,23:28:1008:23:812:-58.0484,0,-75.6838	1/1:103:0,103:0:0:103:3668:-330.321,-31.0061,0	0/1:44:39,5:39:1389:5:180:-3.30675,0,-112.062	0/1:63:34,29:34:1216:29:1013:-72.5145,0,-90.7817	0/1:46:16,30:16:572:30:1057:-81.5916,0,-37.966	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:129:75,54:75:2688:54:1905:-132.893,0,-203.332	1/1:72:0,72:0:0:72:2564:-231.011,-21.6742,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:91:0,91:0:0:91:3238:-291.639,-27.3937,0	0/1:41:22,19:22:792:19:680:-49.1869,0,-59.2634	1/1:58:0,58:0:0:58:2049:-184.68,-17.4597,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:155:80,75:80:2865:75:2696:-196.224,0,-211.426	1/1:63:0,63:0:0:63:2240:-201.864,-18.9649,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:38:23,15:23:828:15:536:-37.1357,0,-63.405	0/1:128:74,54:74:2660:54:1914:-134.002,0,-201.113	0/1:70:51,19:51:1824:19:684:-40.8182,0,-143.369	1/1:88:1,87:1:36:87:3097:-275.359,-22.8924,0	0/1:35:18,17:18:644:17:608:-44.516,0,-47.7545	0/1:58:31,27:31:1112:27:972:-70.3382,0,-82.9316	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	.:.:.:.:.:.:.:.	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	.:.:.:.:.:.:.:.	0/1:64:34,30:34:1208:30:1050:-75.5403,0,-89.7602	1/1:19:0,19:0:0:19:674:-60.9875,-5.71957,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	0/1:95:59,36:59:2124:36:1292:-87.9859,0,-162.83	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:153:1,152:1:21:152:5398:-483.852,-43.9576,0	0/1:121:61,60:61:2184:60:2152:-157.523,0,-160.401	0/1:39:16,23:16:561:23:824:-62.7431,0,-39.077	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/1:75:46,29:46:1648:29:1040:-71.3371,0,-126.031	0/1:79:62,17:62:2220:17:612:-31.6321,0,-176.283	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1723	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:37:18,19:18:644:19:669:-49.3958,0,-47.1525	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3601	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7641	0/1:53:29,24:29:1044:24:860:-61.7672,0,-78.3202	0/1:66:38,28:38:1368:28:996:-70.0869,0,-103.553	1/1:97:0,97:0:0:97:3460:-311.613,-29.1999,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:58:24,34:24:856:34:1216:-92.2868,0,-59.4097	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:57:30,27:30:1068:27:964:-69.9181,0,-79.2734	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	0/1:76:33,43:33:1188:43:1544:-116.375,0,-84.3503	0/1:46:25,21:25:900:21:752:-54.1589,0,-67.4736	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	1/1:67:0,67:0:0:67:2388:-215.178,-20.169,0	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	0/1:52:31,21:31:1116:21:756:-52.7137,0,-85.0981	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:68:43,25:43:1544:25:892:-60.1296,0,-118.783	0/1:49:35,14:35:1252:14:504:-30.9476,0,-98.2346	1/1:105:0,105:0:0:105:3745:-337.25,-31.6082,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0
chr11	3695893	.	CC	GC,GT	127665	PASS	AB=0.53231,0.466882;ABP=14.236,14.8043;AC=167,21;AF=0.888298,0.111702;AN=188;AO=5181,623;CIGAR=1X1M,2X;DP=5807;DPB=5807;DPRA=0,1.01429;EPP=11253.4,1355.84;EPPR=0;GTI=3;LEN=1,2;MEANALT=1.47872,2.07143;MQM=58.9085,53.3772;MQMR=0;NS=94;NUMALT=2;ODDS=0.699076;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=183771,21923;QR=0;RO=0;RPL=0,0;RPP=11253.4,1355.84;RPPR=0;RPR=5181,623;RUN=1,1;SAF=0,0;SAP=11253.4,1355.84;SAR=5181,623;SRF=0;SRP=0;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:46:0,29,17:0:0:29,17:1026,606:-133.094,-49.5313,-40.8015,-83.9172,0,-78.7997	1/2:85:0,34,51:0:0:34,51:1183,1815:-244.148,-147.974,-137.739,-96.5238,0,-81.1713	1/2:218:0,115,103:0:0:115,103:4073,3641:-627.33,-295.776,-261.157,-331.907,0,-300.901	1/1:116:0,113,2:0:0:113,2:3971,70:-357.071,-34.0164,0,-351.449,-28.4038,-350.847	1/1:45:0,45,0:0:0:45,0:1600,0:-143.824,-13.5464,0,-143.824,-13.5464,-143.824	1/1:12:0,12,0:0:0:12,0:421,0:-38.2197,-3.61236,0,-38.2197,-3.61236,-38.2197	1/1:35:0,35,0:0:0:35,0:1251,0:-112.842,-10.5361,0,-112.842,-10.5361,-112.842	1/2:142:0,67,75:0:0:67,75:2384,2626:-407.023,-213.201,-193.032,-194.174,0,-171.597	1/2:79:0,45,34:0:0:45,34:1597,1208:-228.336,-98.5804,-85.034,-130.109,0,-119.874	1/1:26:0,25,1:0:0:25,1:888,36:-79.8585,-7.52575,0,-76.9255,-4.23361,-76.6245	1/1:12:0,12,0:0:0:12,0:432,0:-39.2204,-3.61236,0,-39.2204,-3.61236,-39.2204	1/2:40:0,17,23:0:0:17,23:591,796:-112.743,-64.9243,-59.8068,-48.1647,0,-41.2411	1/2:27:0,15,12:0:0:15,12:528,428:-78.0636,-35.1125,-30.5971,-43.3047,0,-39.6923	1/1:20:0,20,0:0:0:20,0:716,0:-64.7607,-6.0206,0,-64.7607,-6.0206,-64.7607	1/1:28:0,28,0:0:0:28,0:996,0:-89.8692,-8.42884,0,-89.8692,-8.42884,-89.8692	1/1:18:0,18,0:0:0:18,0:630,0:-57.0162,-5.41854,0,-57.0162,-5.41854,-57.0162	1/2:15:0,6,9:0:0:6,9:216,324:-44.2546,-26.6297,-24.8235,-17.9839,0,-15.2747	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/2:5:0,2,3:0:0:2,3:72,100:-14.3021,-8.41648,-7.81442,-6.23466,0,-5.33157	1/1:107:0,105,2:0:0:105,2:3725,72:-334.455,-31.6082,0,-328.591,-25.3856,-327.989	1/1:112:0,112,0:0:0:112,0:3968,0:-357.059,-33.7154,0,-357.059,-33.7154,-357.059	1/1:42:0,40,2:0:0:40,2:1432,57:-128.879,-12.0412,0,-124.359,-7.23288,-123.757	1/1:53:0,53,0:0:0:53,0:1879,0:-169.365,-15.9546,0,-169.365,-15.9546,-169.365	1/1:28:0,27,1:0:0:27,1:941,25:-84.6496,-8.12781,0,-82.7045,-5.92927,-82.4035	1/1:63:0,63,0:0:0:63,0:2228,0:-200.353,-18.9649,0,-200.353,-18.9649,-200.353	1/1:129:0,129,0:0:0:129,0:4576,0:-411.734,-38.8329,0,-411.734,-38.8329,-411.734	1/1:211:0,211,0:0:0:211,0:7476,0:-672.557,-63.5173,0,-672.557,-63.5173,-672.557	1/1:5:0,5,0:0:0:5,0:176,0:-16.1832,-1.50515,0,-16.1832,-1.50515,-16.1832	1/1:257:0,257,0:0:0:257,0:9138,0:-821.592,-77.3647,0,-821.592,-77.3647,-821.592	1/1:65:0,63,2:0:0:63,2:2243,72:-201.701,-18.9649,0,-195.835,-12.7399,-195.233	1/1:134:0,134,0:0:0:134,0:4722,0:-424.593,-40.338,0,-424.593,-40.338,-424.593	1/1:11:0,11,0:0:0:11,0:392,0:-35.6153,-3.31133,0,-35.6153,-3.31133,-35.6153	1/1:24:0,24,0:0:0:24,0:845,0:-76.3139,-7.22472,0,-76.3139,-7.22472,-76.3139	1/1:3:0,3,0:0:0:3,0:108,0:-10.0742,-0.90309,0,-10.0742,-0.90309,-10.0742	1/1:8:0,8,0:0:0:8,0:288,0:-26.2211,-2.40824,0,-26.2211,-2.40824,-26.2211	1/1:24:0,24,0:0:0:24,0:847,0:-76.5472,-7.22472,0,-76.5472,-7.22472,-76.5472	1/1:20:0,20,0:0:0:20,0:707,0:-63.9095,-6.0206,0,-63.9095,-6.0206,-63.9095	1/1:123:0,122,1:0:0:122,1:4336,31:-389.337,-36.7257,0,-386.85,-33.9289,-386.549	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:4:0,3,1:0:0:3,1:104,36:-11.7347,-3.29214,-2.38905,-8.79872,0,-8.49769	1/1:78:0,75,3:0:0:75,3:2651,93:-237.836,-22.5773,0,-230.381,-14.8113,-229.478	1/1:13:0,13,0:0:0:13,0:460,0:-41.7314,-3.91339,0,-41.7314,-3.91339,-41.7314	1/1:120:0,120,0:0:0:120,0:4281,0:-385.288,-36.1236,0,-385.288,-36.1236,-385.288	1/1:14:0,14,0:0:0:14,0:473,0:-42.88,-4.21442,0,-42.88,-4.21442,-42.88	1/1:7:0,7,0:0:0:7,0:248,0:-22.6636,-2.10721,0,-22.6636,-2.10721,-22.6636	1/1:54:0,53,1:0:0:53,1:1878,36:-168.892,-15.9546,0,-165.959,-12.6624,-165.658	1/2:139:0,80,59:0:0:80,59:2844,2075:-399.826,-168.476,-144.394,-231.702,0,-213.941	1/1:180:0,180,0:0:0:180,0:6421,0:-577.257,-54.1854,0,-577.257,-54.1854,-577.257	1/1:82:0,81,1:0:0:81,1:2848,36:-256.181,-24.3834,0,-253.247,-21.0899,-252.946	1/1:59:0,58,1:0:0:58,1:2063,34:-185.597,-17.4597,0,-182.841,-14.3642,-182.54	1/1:136:0,136,0:0:0:136,0:4851,0:-436.239,-40.9401,0,-436.239,-40.9401,-436.239	1/1:6:0,6,0:0:0:6,0:212,0:-19.4246,-1.80618,0,-19.4246,-1.80618,-19.4246	1/1:212:0,212,0:0:0:212,0:7507,0:-675.174,-63.8184,0,-675.174,-63.8184,-675.174	1/1:34:0,31,3:0:0:31,3:1095,106:-98.4985,-9.33193,0,-89.879,-0.359722,-88.9759	1/1:18:0,18,0:0:0:18,0:648,0:-58.6503,-5.41854,0,-58.6503,-5.41854,-58.6503	1/1:72:0,66,6:0:0:66,6:2347,210:-210.981,-19.868,0,-193.918,-2.45566,-192.112	1/1:52:0,52,0:0:0:52,0:1850,0:-166.406,-15.6536,0,-166.406,-15.6536,-166.406	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:4: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chr11	3698761	.	TTCG	TTCA,CTCA	152877	PASS	AB=0.516586,0.480122;ABP=12.4468,16.5643;AC=135,51;AF=0.725806,0.274194;AN=186;AO=5237,1899;CIGAR=3M1X,1X2M1X;DP=7164;DPB=7164.25;DPRA=38.9239,1.07594;EPP=11340.3,4126.64;EPPR=9.52472;GTI=1;LEN=1,4;MEANALT=1.79348,2.21569;MQM=59.9435,59.4918;MQMR=60;NS=93;NUMALT=2;ODDS=0.58025;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=187803,67312;QR=88;RO=3;RPL=1,0;RPP=11366.3,4126.64;RPPR=9.52472;RPR=5236,1899;RUN=1,1;SAF=5234,1899;SAP=11349,4126.64;SAR=3,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:76:0,45,31:0:0:45,31:1612,1073:-219.009,-87.5358,-73.9895,-131.824,0,-122.492	1/2:66:0,37,29:0:0:37,29:1320,1039:-192.701,-85.0945,-73.9564,-107.964,0,-99.234	1/2:139:0,73,66:0:0:73,66:2611,2339:-403.744,-190.875,-168.9,-213.224,0,-193.356	1/2:221:0,120,100:0:0:120,100:4286,3540:-637.761,-288.325,-252.201,-349.432,0,-319.329	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/2:94:0,42,52:0:0:42,52:1504,1834:-272.282,-149.626,-136.983,-123.011,0,-107.358	1/2:97:0,54,42:0:0:54,42:1936,1499:-280.179,-122.275,-106.019,-157.999,0,-145.356	1/2:102:0,68,34:0:0:68,34:2448,1211:-298.79,-99.0433,-78.5733,-200.104,0,-189.869	1/2:83:0,49,33:0:0:49,33:1753,1183:-239.534,-96.5868,-81.8363,-143.051,0,-133.117	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/2:116:0,63,53:0:0:63,53:2264,1885:-338.656,-153.956,-134.991,-185.057,0,-169.103	1/2:63:0,36,27:0:0:36,27:1292,967:-184.583,-79.195,-68.3579,-105.747,0,-97.6189	1/1:54:0,54,0:0:0:54,0:1939,0:-174.783,-16.2556,0,-174.783,-16.2556,-174.783	1/1:63:0,62,0:0:0:62,0:2224,0:-200.172,-18.6639,0,-200.172,-18.6639,-200.172	1/1:64:0,64,0:0:0:64,0:2296,0:-206.901,-19.2659,0,-206.901,-19.2659,-206.901	1/2:21:0,5,16:0:0:5,16:180,569:-61.4137,-46.7256,-45.2205,-15.0469,0,-10.2304	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:19:0,7,12:0:0:7,12:248,430:-55.6161,-35.4147,-33.3075,-20.557,0,-16.9446	1/2:112:0,70,42:0:0:70,42:2497,1491:-325.394,-121.841,-100.768,-203.909,0,-191.266	1/1:175:0,175,0:0:0:175,0:6275,0:-564.834,-52.6803,0,-564.834,-52.6803,-564.834	1/2:65:0,25,39:0:0:25,39:896,1384:-185.863,-112.785,-105.259,-73.1034,0,-61.3632	1/2:74:0,47,27:0:0:47,27:1677,954:-214.699,-77.9861,-63.8377,-137.067,0,-128.939	1/2:72:0,53,19:0:0:53,19:1908,672:-210.765,-55.0773,-39.1228,-156.043,0,-150.323	1/1:86:0,86,0:0:0:86,0:3096,0:-278.866,-25.8886,0,-278.866,-25.8886,-278.866	1/2:123:0,58,65:0:0:58,65:2076,2264:-353.307,-184.009,-166.549,-169.651,0,-150.084	1/1:267:0,264,0:0:0:264,0:9464,0:-851.453,-79.4719,0,-851.453,-79.4719,-851.453	1/1:38:0,38,0:0:0:38,0:1368,0:-123.421,-11.4391,0,-123.421,-11.4391,-123.421	1/1:187:0,187,0:0:0:187,0:6696,0:-602.715,-56.2926,0,-602.715,-56.2926,-602.715	1/2:113:0,57,56:0:0:57,56:2033,1989:-328.023,-162.297,-145.138,-166.082,0,-149.224	1/1:132:2,130,0:2:58:130,0:4659,0:-413.952,-34.2277,0,-414.554,-39.1339,-419.169	.:.:.:.:.:.:.:.	1/1:16:0,16,0:0:0:16,0:568,0:-51.4519,-4.81648,0,-51.4519,-4.81648,-51.4519	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:151:0,70,81:0:0:70,81:2507,2872:-438.296,-233.842,-212.77,-204.81,0,-180.427	1/1:59:1,58,0:1:30:58,0:2088,0:-185.19,-14.7612,0,-185.491,-17.4597,-187.889	1/1:46:0,45,0:0:0:45,0:1616,0:-145.44,-13.5464,0,-145.44,-13.5464,-145.44	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:81:0,42,39:0:0:42,39:1504,1370:-234.496,-111.84,-99.1963,-123.011,0,-111.271	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6759,-8.42884,0,-90.6759,-8.42884,-90.6759	1/1:127:0,126,0:0:0:126,0:4516,0:-406.396,-37.9298,0,-406.396,-37.9298,-406.396	1/1:46:0,46,0:0:0:46,0:1652,0:-148.968,-13.8474,0,-148.968,-13.8474,-148.968	1/2:64:0,24,40:0:0:24,40:860,1410:-185.173,-115.032,-107.807,-70.4971,0,-58.4559	1/2:82:0,33,49:0:0:33,49:1173,1749:-238.516,-142.941,-133.007,-95.9309,0,-81.1804	1/2:65:0,40,25:0:0:40,25:1428,886:-188.954,-72.5328,-60.4916,-116.776,0,-109.251	1/1:119:0,118,0:0:0:118,0:4236,0:-381.155,-35.5215,0,-381.155,-35.5215,-381.155	1/2:86:0,51,35:0:0:51,35:1836,1249:-251.989,-102.179,-86.8265,-150.168,0,-139.632	1/2:98:0,62,36:0:0:62,36:2224,1285:-286.515,-105.114,-86.4502,-181.758,0,-170.921	1/1:158:0,157,0:0:0:157,0:5621,0:-505.695,-47.2617,0,-505.695,-47.2617,-505.695	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:83:0,83,0:0:0:83,0:2984,0:-268.791,-24.9855,0,-268.791,-24.9855,-268.791	1/2:98:0,40,57:0:0:40,57:1428,2016:-280.683,-164.261,-152.22,-116.486,0,-99.3273	1/1:1:0,1,0:0:0:1,0:32,0:-3.19931,-0.30103,0,-3.19931,-0.30103,-3.19931	1/2:116:0,69,45:0:0:69,45:2476,1591:-330.982,-129.026,-108.255,-202.06,0,-188.514	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/2:4:0,3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chr11	3722265	.	A	C	15825.9	PASS	AB=0.463788;ABP=27.5437;AC=48;AF=0.258065;AN=186;AO=1001;CIGAR=1X;DP=3900;DPB=3900;DPRA=1.3151;EPP=2167.98;EPPR=6269.91;GTI=1;LEN=1;MEANALT=1.02;MQM=59.994;MQMR=59.9928;NS=93;NUMALT=1;ODDS=1.32553;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35428;QR=103562;RO=2898;RPL=1000;RPP=2167.98;RPPR=6269.91;RPR=1;RUN=1;SAF=1001;SAP=2176.65;SAR=0;SRF=2898;SRP=6295.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:57:22,35:22:783:35:1252:-95.8264,0,-53.6342	0/1:104:51,53:51:1828:53:1880:-138.169,0,-133.494	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:53:33,20:33:1180:20:720:-49.1742,0,-90.5535	0/1:27:9,18:9:324:18:621:-48.0834,0,-21.378	0/1:27:15,12:15:540:12:428:-30.731,0,-40.8087	0/1:56:35,21:35:1243:21:732:-49.341,0,-95.3162	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:54:29,25:29:1036:25:876:-62.9014,0,-77.2983	0/1:52:24,28:24:860:28:977:-72.587,0,-62.0683	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/1:16:10,6:10:360:6:199:-13.419,0,-27.9278	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:15:13,2:13:455:2:72:-2.32127,0,-36.7665	0/1:80:37,43:37:1323:43:1523:-113.28,0,-95.2889	0/0:76:76,0:76:2723:0:0:0,-22.8783,-245.312	0/1:21:3,18:3:108:18:648:-52.3303,0,-3.75354	0/1:45:19,26:19:684:26:932:-70.6525,0,-48.344	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/1:123:80,42:80:2876:42:1480:-96.4064,0,-221.991	0/0:112:112,0:112:3980:0:0:0,-33.7154,-358.39	0/0:16:16,0:16:563:0:0:0,-4.81648,-50.9992	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:42:25,17:25:896:17:612:-42.7702,0,-68.3171	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.646	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:104:55,49:55:1972:49:1739:-125.487,0,-146.448	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	.:.:.:.:.:.:.:.	0/1:38:24,14:24:864:14:472:-31.3562,0,-66.6434	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:32:31,1:31:1099:1:36:0,-6.03468,-95.6212	0/1:27:20,7:20:720:7:252:-14.9011,0,-57.001	0/1:34:13,21:13:468:21:748:-57.4103,0,-32.2246	0/1:49:17,32:17:612:32:1140:-88.1582,0,-40.663	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/1:46:32,14:32:1140:14:489:-30.4915,0,-89.0618	0/1:53:36,17:36:1292:17:582:-36.7442,0,-100.629	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:35:17,18:17:608:18:625:-46.0364,0,-44.516	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:95:53,42:53:1891:42:1508:-107.417,0,-141.87	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:14:7,7:7:248:7:248:-18.4498,0,-18.4498	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.204	0/1:68:32,36:32:1144:36:1288:-95.7535,0,-82.7995	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:172:171,1:171:6112:1:36:0,-48.1789,-546.581	0/1:57:34,23:34:1220:23:800:-55.157,0,-92.9481	0/1:20:10,10:10:356:10:360:-26.7237,0,-26.3606	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/1:72:46,26:46:1652:26:928:-62.1641,0,-127.294	0/1:54:22,32:22:784:32:1152:-87.7345,0,-54.6283	0/1:14:9,5:9:320:5:176:-11.9706,0,-24.9279	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:30:20,10:20:716:10:360:-23.7134,0,-55.7368	0/1:21:14,7:14:496:7:252:-16.7073,0,-38.6526	0/1:72:35,37:35:1243:37:1288:-94.5439,0,-90.4997	0/1:40:27,13:27:968:13:464:-30.0563,0,-75.3962	0/1:50:25,25:25:896:25:879:-64.3753,0,-65.9089	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/1:67:34,33:34:1215:33:1163:-84.8071,0,-89.4867	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/1:56:29,27:29:1035:27:968:-70.5797,0,-76.6054	0/0:16:16,0:16:559:0:0:0,-4.81648,-50.6376	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.226	0/1:37:13,24:13:460:24:843:-65.0499,0,-30.5973	0/1:39:23,16:23:820:16:566:-39.531,0,-62.3823	0/0:21:21,0:21:734:0:0:0,-6.32163,-66.3804	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/1:39:20,19:20:707:19:680:-49.789,0,-52.2144	0/0:45:45,0:45:1590:0:0:0,-13.5463,-143.389	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:55:35,20:35:1247:20:686:-45.4991,0,-95.9774	0/1:37:17,20:17:612:20:712:-53.2685,0,-44.2753	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.178	0/0:62:62,0:62:2210:0:0:0,-18.6639,-199.164
chr11	3729688	.	T	C	138139	PASS	AB=0.488703;ABP=8.84858;AC=135;AF=0.725806;AN=186;AO=6514;CIGAR=1X;DP=9214;DPB=9214;DPRA=33.3732;EPP=13242.3;EPPR=5544.67;GTI=2;LEN=1;MEANALT=1.02174;MQM=59.8423;MQMR=59.9692;NS=93;NUMALT=1;ODDS=1.9781;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=232050;QR=96597;RO=2698;RPL=106;RPP=13242.3;RPPR=5544.67;RPR=6408;RUN=1;SAF=0;SAP=14148;SAR=6514;SRF=0;SRP=5861.64;SRR=2698;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:44,17:44:1580:17:608:-36.6802,0,-124.129	0/1:63:36,27:36:1271:27:972:-68.8259,0,-95.7272	0/1:144:45,99:45:1601:99:3560:-277.257,0,-101.03	0/1:210:103,107:103:3700:107:3816:-280.42,0,-269.985	1/1:65:0,65:0:0:65:2324:-209.412,-19.567,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:106:47,59:47:1665:59:2111:-158.346,0,-118.157	0/1:115:62,53:62:2228:53:1888:-135.565,0,-166.165	0/1:157:80,77:80:2868:77:2768:-202.096,0,-211.095	0/1:82:33,49:33:1180:49:1733:-131.526,0,-81.7786	1/1:44:0,44:0:0:44:1550:-139.788,-13.2453,0	0/1:107:51,56:51:1827:56:1995:-147.54,0,-132.499	0/1:92:47,45:47:1692:45:1589:-115.515,0,-124.872	1/1:63:0,63:0:0:63:2242:-202.036,-18.9649,0	1/1:81:0,81:0:0:81:2891:-260.426,-24.3834,0	1/1:76:0,76:0:0:76:2672:-240.036,-22.8783,0	0/1:44:20,24:20:720:24:849:-63.4825,0,-51.8835	1/1:40:0,40:0:0:40:1432:-129.174,-12.0412,0	0/1:28:13,15:13:468:15:523:-38.8988,0,-34.0308	0/1:292:122,170:122:4361:170:6047:-456.436,0,-304.751	1/1:212:1,211:1:36:211:7434:-665.22,-60.2201,0	0/1:95:54,41:54:1932:41:1446:-101.832,0,-145.559	0/1:148:78,70:78:2784:70:2481:-178.734,0,-206.249	0/1:97:57,40:57:2048:40:1424:-99.2576,0,-155.388	1/1:105:0,105:0:0:105:3739:-336.475,-31.6082,0	0/1:251:121,129:121:4317:129:4603:-338.86,0,-313.177	1/1:241:0,241:0:0:241:8579:-771.953,-72.5482,0	1/1:52:0,52:0:0:52:1851:-166.869,-15.6536,0	1/1:263:1,262:1:36:262:9351:-837.563,-75.5726,0	0/1:104:49,55:49:1764:55:1968:-146.037,0,-127.737	1/1:84:0,84:0:0:84:2990:-269.332,-25.2865,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:23:0,23:0:0:23:808:-73.0382,-6.92369,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:17:0,17:0:0:17:608:-55.0511,-5.11751,0	1/1:9:0,9:0:0:9:320:-29.1414,-2.70927,0	0/1:199:95,104:95:3412:104:3688:-272.218,0,-247.388	1/1:107:0,107:0:0:107:3803:-342.47,-32.2102,0	1/1:54:0,54:0:0:54:1927:-173.704,-16.2556,0	.:.:.:.:.:.:.:.	0/1:151:71,80:71:2540:80:2864:-212.524,0,-183.396	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:147:0,147:0:0:147:5251:-472.722,-44.2514,0	1/1:73:0,73:0:0:73:2589:-233.245,-21.9752,0	0/1:65:41,24:41:1468:24:828:-55.2663,0,-112.827	0/1:127:57,70:57:2044:70:2501:-187.11,0,-146.001	0/1:116:45,71:45:1616:71:2517:-191.854,0,-110.811	1/1:166:1,165:1:36:165:5887:-526.301,-46.3727,0	0/1:121:65,56:65:2328:56:2004:-144.209,0,-173.355	0/1:91:47,44:47:1669:44:1571:-114.288,0,-123.102	1/1:111:0,111:0:0:111:3950:-355.617,-33.4143,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:123:0,123:0:0:123:4408:-396.881,-37.0267,0	0/1:89:43,46:43:1544:46:1637:-120.825,0,-112.461	1/1:6:0,6:0:0:6:216:-19.7788,-1.80618,0	0/1:176:96,80:96:3440:80:2850:-203.756,0,-256.832	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	0/1:12:5,7:5:180:7:243:-18.5711,0,-12.9397	0/1:23:12,11:12:428:11:388:-28.3337,0,-31.9351	1/1:81:0,81:0:0:81:2896:-260.861,-24.3834,0	0/1:100:56,44:56:2007:44:1567:-111.218,0,-150.8	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:145:0,145:0:0:145:5162:-464.722,-43.6494,0	0/1:169:82,87:82:2932:87:3096:-227.992,0,-213.241	0/1:73:45,28:45:1616:28:1004:-68.7007,0,-123.755	1/1:85:0,85:0:0:85:2998:-270.038,-25.5876,0	0/1:150:90,60:90:3236:60:2135:-147.261,0,-246.306	0/1:184:116,68:116:4153:68:2436:-164.106,0,-318.562	0/1:38:29,9:29:1040:9:311:-16.8846,0,-82.4752	1/1:109:0,109:0:0:109:3916:-352.628,-32.8123,0	0/1:59:30,29:30:1072:29:1040:-76.1536,0,-79.0317	0/1:18:4,14:4:144:14:504:-40.2796,0,-7.89508	0/1:134:76,58:76:2720:58:2071:-146.092,0,-204.705	0/1:119:66,53:66:2363:53:1895:-135.001,0,-177.076	0/1:169:66,103:66:2376:103:3663:-278.823,0,-163.223	1/1:197:0,197:0:0:197:7025:-632.292,-59.3029,0	1/1:95:0,95:0:0:95:3407:-306.839,-28.5979,0	0/1:123:68,55:68:2417:55:1964:-140.004,0,-180.758	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:139:86,53:86:3080:53:1908:-130.154,0,-235.585	1/1:118:1,117:1:36:117:4156:-370.615,-31.9233,0	1/1:243:0,243:0:0:243:8653:-778.766,-73.1503,0	0/1:73:43,30:43:1531:30:1080:-75.5381,0,-116.107	0/1:78:34,43:34:1209:43:1514:-113.01,0,-85.5751	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:135:0,135:0:0:135:4811:-433.105,-40.6391,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:68:37,31:37:1323:31:1084:-77.3942,0,-98.9004	1/1:87:0,87:0:0:87:3085:-277.876,-26.1896,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:86:47,39:47:1692:39:1384:-98.9634,0,-126.678	0/1:106:68,38:68:2435:38:1346:-89.5295,0,-187.495	1/1:136:0,136:0:0:136:4871:-438.542,-40.9401,0	1/1:147:0,147:0:0:147:5267:-474.165,-44.2514,0
chr11	3729715	.	G	T	137790	PASS	AB=0.500095;ABP=3.01071;AC=135;AF=0.725806;AN=186;AO=6651;CIGAR=1X;DP=9287;DPB=9287;DPRA=33.6377;EPP=14445.5;EPPR=5722.67;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.8218;MQMR=59.9696;NS=93;NUMALT=1;ODDS=0.280543;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238192;QR=93479;RO=2634;RPL=6651;RPP=14445.5;RPPR=5722.67;RPR=0;RUN=1;SAF=0;SAP=14445.5;SAR=6651;SRF=0;SRP=5722.67;SRR=2634;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:45,16:45:1596:16:576:-33.8103,0,-125.567	0/1:64:35,29:35:1252:29:1040:-74.6413,0,-93.7192	0/1:148:47,101:47:1644:101:3619:-281.362,0,-103.695	0/1:213:104,109:104:3696:109:3897:-286.803,0,-268.726	1/1:67:0,67:0:0:67:2385:-214.861,-20.169,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:106:47,59:47:1668:59:2116:-158.796,0,-118.428	0/1:118:64,54:64:2264:54:1923:-137.787,0,-168.502	0/1:157:77,80:77:2721:80:2864:-210.733,0,-197.872	0/1:86:33,53:33:1168:53:1901:-145.222,0,-79.4937	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:111:51,60:51:1816:60:2160:-161.144,0,-130.307	0/1:88:45,43:45:1595:43:1533:-111.766,0,-117.349	1/1:65:0,65:0:0:65:2340:-210.853,-19.567,0	1/1:80:0,80:0:0:80:2880:-259.436,-24.0824,0	1/1:75:0,75:0:0:75:2688:-240.432,-22.5773,0	0/1:43:19,24:19:668:24:860:-64.7766,0,-47.5014	1/1:40:0,40:0:0:40:1432:-129.175,-12.0412,0	0/1:26:12,14:12:424:14:504:-37.795,0,-30.6696	0/1:295:120,175:120:4268:175:6264:-475.028,0,-295.497	1/1:216:1,215:1:36:215:7684:-687.072,-61.4242,0	0/1:92:52,40:52:1848:40:1432:-101.464,0,-138.905	0/1:145:76,69:76:2696:69:2476:-179.171,0,-199.237	0/1:97:55,42:55:1932:42:1512:-107.175,0,-144.954	1/1:106:0,106:0:0:106:3789:-341.203,-31.9092,0	0/1:254:120,134:120:4252:134:4800:-355.489,0,-306.402	1/1:245:0,245:0:0:245:8766:-788.428,-73.7524,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:273:1,272:1:36:272:9757:-873.994,-78.5829,0	0/1:104:48,56:48:1700:56:1989:-147.924,0,-121.979	1/1:83:0,83:0:0:83:2972:-267.343,-24.9855,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:18:0,18:0:0:18:644:-58.2897,-5.41854,0	1/1:9:0,9:0:0:9:324:-29.5049,-2.70927,0	0/1:196:90,106:90:3191:106:3804:-283.555,0,-228.413	1/1:109:0,109:0:0:109:3896:-350.835,-32.8123,0	1/1:57:0,57:0:0:57:2052:-184.95,-17.1587,0	.:.:.:.:.:.:.:.	0/1:151:69,82:69:2456:82:2944:-219.72,0,-175.84	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:158:0,158:0:0:158:5637:-507.445,-47.5627,0	1/1:73:0,73:0:0:73:2628:-236.753,-21.9752,0	0/1:66:42,24:42:1488:24:860:-57.8539,0,-114.337	0/1:128:58,70:58:2064:70:2512:-187.8,0,-147.499	0/1:116:45,71:45:1599:71:2536:-193.565,0,-109.28	1/1:169:0,168:0:0:168:6009:-540.49,-50.573,0	0/1:119:63,56:63:2236:56:2007:-145.081,0,-165.682	0/1:86:42,44:42:1504:44:1576:-116.243,0,-109.766	1/1:110:0,110:0:0:110:3913:-352.145,-33.1133,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:128:0,128:0:0:128:4596:-413.792,-38.5318,0	0/1:89:42,47:42:1500:47:1688:-125.415,0,-108.503	1/1:7:0,7:0:0:7:252:-23.0173,-2.10721,0	0/1:172:91,81:91:3248:81:2912:-210.537,0,-240.765	1/1:49:0,49:0:0:49:1760:-158.655,-14.7505,0	0/1:12:5,7:5:180:7:252:-19.2569,0,-12.9397	0/1:23:12,11:12:420:11:396:-29.0591,0,-31.2103	1/1:83:0,83:0:0:83:2965:-267.08,-24.9855,0	0/1:100:55,45:55:1936:45:1608:-114.907,0,-144.414	0/1:6:3,3:3:100:3:108:-8.26899,0,-7.52426	1/1:146:0,146:0:0:146:5225:-470.386,-43.9504,0	0/1:172:81,91:81:2880:91:3268:-242.562,0,-207.661	0/1:69:41,28:41:1456:28:1008:-70.2653,0,-110.565	1/1:84:0,84:0:0:84:3014:-271.483,-25.2865,0	0/1:151:88,63:88:3112:63:2239:-156.299,0,-234.854	0/1:185:111,74:111:3960:74:2637:-181.885,0,-300.902	0/1:37:28,9:28:991:9:324:-18.3677,0,-78.3654	1/1:117:0,117:0:0:117:4181:-376.461,-35.2205,0	0/1:57:27,30:27:960:30:1080:-80.3464,0,-69.5576	0/1:19:4,15:4:140:15:540:-43.217,0,-7.22501	0/1:135:76,59:76:2700:59:2104:-148.76,0,-202.606	0/1:124:67,57:67:2372:57:2052:-147.192,0,-176.272	0/1:167:61,106:61:2192:106:3783:-289.849,0,-147.273	1/1:201:0,201:0:0:201:7211:-648.994,-60.507,0	1/1:97:0,97:0:0:97:3484:-313.765,-29.1999,0	0/1:118:64,54:64:2268:54:1932:-138.63,0,-168.862	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:140:87,53:87:3104:53:1900:-129.134,0,-237.444	1/1:122:1,121:1:36:121:4309:-384.369,-33.1274,0	1/1:247:0,247:0:0:247:8806:-792.471,-74.3544,0	0/1:73:42,31:42:1472:31:1116:-78.7765,0,-110.799	0/1:76:33,43:33:1172:43:1544:-116.375,0,-82.9092	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:137:0,137:0:0:137:4909:-441.902,-41.2411,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:67:34,33:34:1208:33:1188:-87.0544,0,-88.8571	1/1:87:0,87:0:0:87:3122:-281.206,-26.1896,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:83:44,39:44:1559:39:1404:-101.668,0,-115.615	0/1:103:67,36:67:2371:36:1292:-85.5777,0,-182.642	1/1:139:0,139:0:0:139:4981:-448.436,-41.8432,0	1/1:149:0,148:0:0:148:5297:-476.503,-44.5524,0
chr11	3770360	.	C	A	95289.6	PASS	AB=0.491803;ABP=5.14617;AC=135;AF=0.725806;AN=186;AO=4677;CIGAR=1X;DP=6549;DPB=6549;DPRA=14.2261;EPP=10159;EPPR=4057.15;GTI=1;LEN=1;MEANALT=1.05435;MQM=48.8788;MQMR=59.256;NS=93;NUMALT=1;ODDS=1.61378;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167425;QR=65989;RO=1867;RPL=4677;RPP=10159;RPPR=4057.15;RPR=0;RUN=1;SAF=4677;SAP=10159;SAR=0;SRF=1867;SRP=4057.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:16,15:16:544:15:540:-38.7085,0,-39.9478	0/1:40:22,18:22:788:18:641:-44.632,0,-59.2036	0/1:41:18,23:18:629:23:824:-61.3728,0,-44.4756	0/1:125:61,64:61:2171:64:2292:-167.74,0,-158.006	1/1:49:0,49:0:0:49:1764:-156.546,-14.7505,0	1/1:34:0,34:0:0:34:1224:-108.066,-10.235,0	0/1:104:56,48:56:1997:48:1724:-123.217,0,-148.642	0/1:67:28,39:28:970:39:1396:-103.623,0,-67.3153	0/1:81:43,38:43:1526:38:1368:-97.5658,0,-113.177	0/1:91:37,54:37:1311:54:1944:-145.791,0,-90.8865	1/1:85:0,84:0:0:84:3014:-269.866,-25.2865,0	0/1:98:53,45:53:1882:45:1605:-112.035,0,-139.591	0/1:86:39,47:39:1374:47:1692:-124.339,0,-97.9396	1/1:87:0,87:0:0:87:3106:-276.641,-26.1896,0	1/1:63:0,63:0:0:63:2264:-202.2,-18.9649,0	1/1:67:0,67:0:0:67:2394:-212.566,-20.169,0	0/1:75:37,38:37:1319:38:1360:-97.9083,0,-96.0763	1/1:74:0,74:0:0:74:2655:-235.154,-22.2762,0	0/1:50:24,25:24:843:25:896:-64.4567,0,-60.9898	0/1:81:50,31:50:1760:31:1089:-73.3381,0,-134.246	1/1:106:0,106:0:0:106:3781:-336.367,-31.9092,0	0/1:80:61,19:61:2162:19:680:-37.1436,0,-170.749	0/1:64:31,33:31:1080:33:1176:-86.5146,0,-78.2213	0/1:99:53,46:53:1885:46:1644:-116.44,0,-140.112	1/1:57:0,57:0:0:57:2052:-182.385,-17.1587,0	0/1:191:85,106:85:3020:106:3799:-282.214,0,-214.518	1/1:158:0,158:0:0:158:5664:-504.675,-47.5627,0	1/1:44:0,44:0:0:44:1559:-139.216,-13.2453,0	1/1:94:0,94:0:0:94:3376:-302.843,-28.2968,0	0/1:63:27,36:27:968:36:1296:-96.1814,0,-68.4372	1/1:74:0,74:0:0:74:2651:-237.59,-22.2762,0	1/1:3:0,3:0:0:3:108:-10.0205,-0.90309,0	1/1:22:0,22:0:0:22:792:-71.1992,-6.62266,0	1/1:2:0,2:0:0:2:72:-6.76137,-0.60206,0	1/1:7:0,7:0:0:7:252:-22.7752,-2.10721,0	1/1:5:0,5:0:0:5:180:-16.3696,-1.50515,0	0/1:235:95,140:95:3359:140:5024:-379.091,0,-231.609	1/1:61:0,61:0:0:61:2196:-195.981,-18.3628,0	1/1:64:0,64:0:0:64:2285:-200.206,-19.2659,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:44:25,19:25:896:19:684:-47.4886,0,-67.715	1/1:37:0,37:0:0:37:1323:-117.998,-11.1381,0	1/1:93:1,91:1:36:91:3268:-287.327,-24.4553,0	1/1:71:0,71:0:0:71:2555:-228.214,-21.3731,0	0/1:59:29,30:29:1000:30:1080:-79.1835,0,-72.5354	0/1:60:27,33:27:964:33:1172:-87.5363,0,-68.9964	0/1:70:36,34:36:1266:34:1216:-86.7769,0,-93.084	1/1:84:2,82:2:72:82:2936:-255.599,-18.4498,0	0/1:85:46,39:46:1632:39:1395:-99.495,0,-121.557	0/1:85:59,26:59:2112:26:928:-57.9226,0,-164.707	1/1:148:0,148:0:0:148:5308:-474.788,-44.5524,0	0/1:8:6,2:6:216:2:72:-4.40608,0,-17.3823	1/1:96:0,96:0:0:96:3447:-305.227,-28.8989,0	0/1:30:16,14:16:572:14:499:-35.8734,0,-42.7825	1/1:8:0,8:0:0:8:284:-25.6352,-2.40824,0	0/1:50:28,22:28:978:22:792:-55.9892,0,-73.2444	1/1:33:0,33:0:0:33:1175:-104.936,-9.93399,0	0/1:10:9,1:9:324:1:36:-0.581122,0,-26.4956	0/1:15:7,8:7:248:8:288:-21.7019,0,-18.091	1/1:54:0,54:0:0:54:1928:-172.87,-16.2556,0	0/1:157:75,82:75:2666:82:2925:-214.629,0,-192.86	.:.:.:.:.:.:.:.	1/1:125:0,125:0:0:125:4477:-400.963,-37.6288,0	0/1:94:38,56:38:1336:56:2012:-151.935,0,-92.2041	0/1:37:10,27:10:360:27:964:-75.0756,0,-21.6062	1/1:22:0,22:0:0:22:792:-71.364,-6.62266,0	0/1:119:55,64:55:1938:64:2300:-170.033,0,-138.821	0/1:25:19,6:19:684:6:212:-11.7945,0,-54.3646	0/1:33:16,17:16:568:17:608:-44.0501,0,-41.5179	1/1:50:1,49:1:36:49:1742:-150.714,-11.4532,0	0/1:73:41,32:41:1409:32:1137:-79.9227,0,-105.104	0/1:24:17,7:17:597:7:252:-15.4589,0,-46.8314	0/1:81:45,36:45:1580:36:1296:-90.9684,0,-118.038	0/1:60:32,28:32:1132:28:1008:-71.9712,0,-83.5691	0/1:121:67,54:67:2393:54:1936:-136.357,0,-179.166	1/1:93:0,93:0:0:93:3336:-297.859,-27.9958,0	1/1:93:0,92:0:0:92:3285:-290.991,-27.6948,0	0/1:62:39,23:39:1349:23:810:-52.9079,0,-103.031	0/1:18:4,14:4:144:14:492:-38.633,0,-7.89508	0/1:47:26,21:26:906:21:752:-53.0677,0,-67.6621	1/1:27:0,27:0:0:27:968:-86.3842,-8.12781,0	1/1:167:0,167:0:0:167:5968:-532.82,-50.272,0	0/1:99:39,60:39:1372:60:2139:-161.961,0,-93.9419	0/1:91:46,44:46:1635:44:1580:-114.328,0,-119.976	1/1:91:0,91:0:0:91:3246:-291.05,-27.3937,0	1/1:144:0,144:0:0:144:5138:-459.714,-43.3483,0	1/1:42:0,42:0:0:42:1490:-132.191,-12.6433,0	0/1:76:37,39:37:1290:39:1396:-101.685,0,-93.3767	1/1:57:0,57:0:0:57:2038:-180.155,-17.1587,0	1/1:60:0,60:0:0:60:2144:-191.403,-18.0618,0	0/1:147:74,73:74:2607:73:2616:-188.787,0,-189.921	0/1:78:54,24:54:1907:24:860:-53.2197,0,-148.382	1/1:40:0,40:0:0:40:1426:-127.436,-12.0412,0	1/1:93:0,93:0:0:93:3315:-296.601,-27.9958,0
chr11	3800975	.	C	G	53440.8	PASS	AB=0.522575;ABP=29.4819;AC=50;AF=0.268817;AN=186;AO=3128;CIGAR=1X;DP=10670;DPB=10670;DPRA=1.18059;EPP=6786.69;EPPR=16349.9;GTI=2;LEN=1;MEANALT=1.03774;MQM=59.9629;MQMR=59.9958;NS=93;NUMALT=1;ODDS=0.0387034;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111488;QR=268845;RO=7536;RPL=3127;RPP=6786.69;RPPR=16349.9;RPR=1;RUN=1;SAF=3128;SAP=6795.38;SAR=0;SRF=7536;SRP=16367.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:28:13,15:13:468:15:536:-40.146,0,-34.0308	0/1:133:48,85:48:1724:85:3037:-233.522,0,-115.408	0/1:122:64,58:64:2271:58:2060:-148.943,0,-167.927	0/1:224:115,109:115:4120:109:3903:-284.032,0,-303.553	0/0:55:55,0:55:1955:0:0:0,-16.5566,-176.225	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:98:51,47:51:1819:47:1678:-121.806,0,-134.49	0/1:152:90,62:90:3205:62:2228:-154.982,0,-242.916	0/1:141:71,70:71:2540:70:2476:-180.647,0,-186.406	0/1:95:41,54:41:1472:54:1921:-144.567,0,-104.178	0/0:108:108,0:108:3836:0:0:0,-32.5112,-345.437	0/1:92:41,51:41:1459:51:1807:-135.216,0,-103.91	0/1:112:54,58:54:1935:58:2069:-152.764,0,-140.71	0/0:152:152,0:152:5371:0:0:0,-45.7566,-483.524	0/0:100:100,0:100:3560:0:0:0,-30.103,-320.607	0/0:96:96,0:96:3406:0:0:0,-28.8989,-306.753	0/1:107:55,52:55:1950:52:1864:-135.829,0,-143.564	0/0:80:80,0:80:2854:0:0:0,-24.0824,-257.097	0/1:41:23,18:23:828:18:632:-44.8645,0,-62.5019	0/1:162:75,87:75:2658:87:3111:-231.449,0,-190.699	0/0:136:135,0:135:4832:0:0:0,-40.639,-434.675	0/1:143:42,101:42:1495:101:3622:-283.138,0,-91.7965	0/1:83:35,48:35:1243:48:1707:-128.93,0,-87.1884	0/1:134:67,67:67:2391:67:2412:-176.998,0,-175.109	0/0:103:103,0:103:3657:0:0:0,-31.0061,-329.332	0/1:396:196,199:196:6979:199:7086:-518.483,0,-508.909	0/0:250:250,0:250:8942:0:0:0,-75.2575,-804.761	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:279:278,1:278:9926:1:27:0,-81.2876,-890.58	0/1:175:88,87:88:3145:87:3104:-226.906,0,-230.594	0/0:136:136,0:136:4848:0:0:0,-40.9401,-436.474	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:282:133,149:133:4763:149:5326:-394.581,0,-343.936	0/0:231:230,0:230:8188:0:0:0,-69.2369,-736.578	0/0:109:109,0:109:3886:0:0:0,-32.8123,-349.935	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:174:77,97:77:2752:97:3459:-259.144,0,-195.543	0/0:47:46,0:46:1630:0:0:0,-13.8474,-146.628	0/0:138:138,0:138:4898:0:0:0,-41.5421,-440.973	0/0:113:113,0:113:4042:0:0:0,-34.0164,-363.967	0/1:71:35,36:35:1256:36:1292:-95.2106,0,-91.9722	0/1:130:56,74:56:1995:74:2660:-200.511,0,-140.689	0/1:83:34,49:34:1215:49:1758:-133.519,0,-84.6703	0/0:199:199,0:199:7128:0:0:0,-59.905,-641.577	0/1:110:57,52:57:2036:52:1864:-135.014,0,-150.487	0/1:198:96,102:96:3440:102:3628:-267.12,0,-250.209	0/0:99:99,0:99:3533:0:0:0,-29.802,-318.178	0/1:11:5,6:5:171:6:212:-16.1135,0,-12.4141	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.486	0/1:45:25,20:25:887:20:705:-50.2281,0,-66.6018	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:97:51,46:51:1836:46:1629:-117.697,0,-136.321	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:27:16,11:16:576:11:392:-27.4922,0,-44.0112	0/0:106:106,0:106:3769:0:0:0,-31.9092,-339.41	0/1:169:86,83:86:3057:83:2966:-216.298,0,-224.485	.:.:.:.:.:.:.:.	0/0:240:240,0:240:8562:0:0:0,-72.2472,-770.581	0/1:192:98,94:98:3516:94:3368:-245.538,0,-258.851	0/1:106:44,62:44:1584:62:2205:-166.805,0,-110.942	0/0:87:87,0:87:3092:0:0:0,-26.1896,-278.507	0/1:244:120,124:120:4296:124:4396:-322.361,0,-313.366	0/1:131:53,78:53:1888:78:2781:-211.096,0,-130.764	0/1:52:28,24:28:986:24:856:-61.7075,0,-73.3986	0/0:67:66,0:66:2372:0:0:0,-19.868,-213.378	0/1:140:82,58:82:2910:58:2046:-142.267,0,-219.989	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/1:86:45,41:45:1616:41:1472:-106.888,0,-119.841	0/1:91:46,45:46:1634:45:1608:-117.616,0,-119.954	0/1:179:84,95:84:2982:95:3383:-250.801,0,-214.728	0/0:180:180,0:180:6448:0:0:0,-54.1854,-580.406	0/0:84:84,0:84:2996:0:0:0,-25.2865,-269.87	0/1:144:60,84:60:2143:84:2984:-225.443,0,-149.789	0/1:14:4,10:4:144:10:343:-26.9861,0,-9.0992	0/1:113:54,59:54:1921:59:2113:-156.364,0,-139.149	0/0:128:128,0:128:4565:0:0:0,-38.5318,-411.016	0/0:250:250,0:250:8954:0:0:0,-75.2575,-805.839	0/1:153:75,78:75:2683:78:2784:-204.742,0,-195.657	0/1:89:45,44:45:1616:44:1552:-113.177,0,-118.938	0/0:132:131,1:131:4662:1:36:0,-36.1377,-416.145	0/0:210:210,0:210:7489:0:0:0,-63.2163,-674.052	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.522	0/1:130:53,77:53:1878:77:2748:-208.429,0,-130.128	0/0:100:100,0:100:3575:0:0:0,-30.103,-321.957	0/0:80:80,0:80:2841:0:0:0,-24.0824,-255.925	0/1:154:74,80:74:2617:80:2835:-209.028,0,-189.416	0/1:97:31,66:31:1077:66:2307:-178.688,0,-68.0361	0/0:91:91,0:91:3254:0:0:0,-27.3937,-293.08	0/0:118:117,1:117:4163:1:36:0,-31.9233,-371.254
chr11	3803135	.	C	T	170958	PASS	AB=0.539079;ABP=83.9661;AC=138;AF=0.734043;AN=188;AO=8204;CIGAR=1X;DP=11031;DPB=11031;DPRA=0;EPP=17817.8;EPPR=6055.15;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.985;MQMR=59.9515;NS=94;NUMALT=1;ODDS=2.52078;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=293663;QR=100530;RO=2823;RPL=0;RPP=17817.8;RPPR=6063.79;RPR=8204;RUN=1;SAF=8204;SAP=17817.8;SAR=0;SRF=2822;SRP=6124.39;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:20,20:20:716:20:720:-52.1468,0,-52.7265	0/1:170:50,120:50:1792:120:4259:-332.311,0,-110.197	0/1:131:59,72:59:2095:72:2572:-192.295,0,-149.384	0/1:316:140,176:140:4991:176:6308:-472.686,0,-354.214	1/1:124:0,124:0:0:124:4452:-400.849,-37.3277,0	1/1:66:0,66:0:0:66:2349:-211.668,-19.868,0	0/1:201:87,114:87:3099:114:4088:-307.597,0,-218.631	0/1:138:46,92:46:1635:92:3300:-255.676,0,-105.896	0/1:168:94,73:94:3342:73:2616:-185.204,0,-250.515	0/1:140:70,70:70:2503:70:2501:-183.197,0,-183.373	1/1:36:1,35:1:36:35:1244:-108.666,-7.23881,0	0/1:69:37,32:37:1312:32:1144:-82.4984,0,-97.6106	0/1:92:57,35:57:2022:35:1260:-86.0107,0,-154.557	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:54:0,54:0:0:54:1925:-173.525,-16.2556,0	0/1:56:26,30:26:928:30:1080:-80.6556,0,-66.9806	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0	0/1:39:28,11:28:978:11:396:-24.2426,0,-76.591	0/1:328:189,139:189:6759:139:4988:-350.326,0,-509.56	1/1:221:0,221:0:0:221:7927:-713.447,-66.5276,0	0/1:134:90,44:90:3197:44:1580:-102.154,0,-247.615	0/1:124:55,68:55:1964:68:2436:-182.107,0,-139.649	0/1:170:57,113:57:2031:113:4052:-313.692,0,-131.877	1/1:101:0,101:0:0:101:3624:-326.365,-30.404,0	0/1:330:116,214:116:4122:214:7653:-589.465,0,-271.826	1/1:308:0,308:0:0:308:10992:-989.177,-92.7172,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:270:0,270:0:0:270:9659:-869.263,-81.2781,0	0/1:149:47,101:47:1659:101:3632:-282.171,0,-104.685	1/1:187:0,187:0:0:187:6712:-603.86,-56.2926,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:184:79,105:79:2806:105:3768:-283.929,0,-197.389	1/1:157:1,156:1:36:156:5576:-498.366,-43.6634,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:199:103,96:103:3688:96:3432:-249.189,0,-272.218	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:218:2,216:2:72:216:7760:-691.591,-58.7878,0	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	0/1:74:32,42:32:1109:42:1504:-113.378,0,-77.8383	0/1:131:54,77:54:1940:77:2756:-208.847,0,-135.25	0/1:131:62,69:62:2190:69:2472:-183.299,0,-157.93	1/1:250:1,249:1:36:249:8901:-797.477,-71.6592,0	0/1:166:83,83:83:2972:83:2940:-214.86,0,-217.742	0/1:132:63,69:63:2231:69:2476:-183.357,0,-161.317	1/1:250:1,249:1:36:249:8885:-796.037,-71.6592,0	0/1:12:4,8:4:136:8:288:-22.655,0,-8.96318	1/1:151:0,151:0:0:151:5408:-486.85,-45.4555,0	0/1:71:31,40:31:1112:40:1436:-108.165,0,-79.0182	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:168:74,94:74:2633:94:3356:-251.684,0,-186.643	1/1:79:2,77:2:64:77:2764:-242.922,-17.7027,0	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/1:21:9,12:9:324:12:417:-31.5386,0,-23.1842	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:98:45,53:45:1607:53:1904:-142.137,0,-115.418	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:335:2,332:2:72:332:11866:-1060.96,-94.0671,0	0/1:186:67,119:67:2369:119:4234:-325.249,0,-156.84	0/1:94:29,65:29:1018:65:2328:-181.483,0,-63.6336	1/1:82:0,82:0:0:82:2921:-263.124,-24.6845,0	0/1:206:99,107:99:3527:107:3832:-283.064,0,-255.626	0/1:140:88,52:88:3131:52:1872:-126.615,0,-239.873	0/1:31:20,11:20:712:11:381:-25.2887,0,-55.0747	1/1:125:0,125:0:0:125:4480:-403.369,-37.6288,0	0/1:77:39,38:39:1400:38:1364:-99.8814,0,-103.12	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/1:140:70,70:70:2512:70:2508:-183.828,0,-184.188	0/1:88:33,55:33:1188:55:1968:-150.904,0,-80.738	0/1:180:71,109:71:2520:109:3887:-295.838,0,-172.868	1/1:247:1,246:1:36:246:8840:-791.983,-70.7561,0	1/1:119:0,119:0:0:119:4229:-380.791,-35.8226,0	0/1:121:45,76:45:1616:76:2716:-208.259,0,-109.305	0/1:18:5,13:5:180:13:464:-36.679,0,-11.1335	0/1:169:77,92:77:2729:92:3308:-247.063,0,-194.978	1/1:154:0,154:0:0:154:5520:-496.925,-46.3586,0	1/1:252:0,252:0:0:252:9016:-811.23,-75.8596,0	0/1:84:40,44:40:1428:44:1576:-116.845,0,-103.531	0/1:64:29,35:29:1044:35:1250:-93.5388,0,-75.0089	1/1:113:0,113:0:0:113:4060:-365.586,-34.0164,0	1/1:144:2,142:2:72:142:5094:-451.765,-36.5116,0	1/1:60:0,60:0:0:60:2135:-192.417,-18.0618,0	0/1:87:47,40:47:1668:40:1436:-103.348,0,-124.218	1/1:71:0,71:0:0:71:2537:-228.58,-21.3731,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:90:46,44:46:1652:44:1561:-113.687,0,-121.876	0/1:112:83,29:83:2947:29:1044:-60.5594,0,-231.75	1/1:113:0,113:0:0:113:4048:-364.507,-34.0164,0	1/1:121:0,121:0:0:121:4348:-391.493,-36.4246,0
chr11	3803195	.	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chr11	3859195	.	G	A	28329.6	PASS	AB=0.516068;ABP=10.1281;AC=50;AF=0.265957;AN=188;AO=1651;CIGAR=1X;DP=5647;DPB=5647;DPRA=1.42306;EPP=3459.01;EPPR=8355.3;GTI=3;LEN=1;MEANALT=1.03448;MQM=59.9818;MQMR=59.9905;NS=94;NUMALT=1;ODDS=0.142095;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58848;QR=141418;RO=3993;RPL=15;RPP=3459.01;RPPR=8338.26;RPR=1636;RUN=1;SAF=0;SAP=3588.11;SAR=1651;SRF=2;SRP=8656.34;SRR=3991;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:9,9:9:315:9:320:-23.7238,0,-23.2687	0/1:58:23,35:23:820:35:1232:-93.7216,0,-56.6628	0/1:47:19,28:19:664:28:1004:-76.5275,0,-45.9361	0/1:115:62,53:62:2220:53:1889:-135.668,0,-165.446	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:41:41,0:41:1449:0:0:0,-12.3422,-130.704	0/1:51:10,41:10:360:41:1468:-117.064,0,-17.3918	0/1:114:64,50:64:2292:50:1788:-126.885,0,-172.224	0/1:69:39,30:39:1378:30:1057:-74.6679,0,-103.546	0/1:74:33,41:33:1176:41:1464:-109.78,0,-83.8715	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:46:26,20:26:920:20:716:-50.9203,0,-69.2697	0/1:53:26,27:26:917:27:968:-71.4828,0,-66.89	0/0:40:38,2:38:1352:2:68:0,-5.58349,-115.523	0/0:41:41,0:41:1446:0:0:0,-12.3422,-130.434	0/0:38:38,0:38:1340:0:0:0,-11.4391,-120.9	0/1:47:31,16:31:1116:16:568:-37.3035,0,-86.6033	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:41:21,20:21:752:20:720:-52.7865,0,-55.664	0/1:82:41,41:41:1459:41:1472:-108.092,0,-106.921	0/0:120:119,1:119:4231:1:36:0,-32.5253,-377.349	0/1:58:11,47:11:392:47:1671:-133.217,0,-18.1603	0/1:61:29,32:29:1036:32:1109:-81.7517,0,-75.1911	0/1:47:10,37:10:360:37:1328:-105.674,0,-18.5959	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:232:106,126:106:3759:126:4483:-333.803,0,-268.671	0/0:108:108,0:108:3805:0:0:0,-32.5112,-342.649	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:117:117,0:117:4175:0:0:0,-35.2205,-375.933	0/1:87:49,38:49:1732:38:1368:-97.2312,0,-129.972	0/0:47:47,0:47:1641:0:0:0,-14.1484,-147.976	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:175:99,75:99:3494:75:2688:-189.534,0,-262.041	0/0:132:132,0:132:4668:0:0:0,-39.736,-420.28	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.387	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:67:37,30:37:1294:30:1072:-76.6234,0,-96.588	0/0:28:27,0:27:959:0:0:0,-8.12781,-86.2657	0/0:46:46,0:46:1623:0:0:0,-13.8474,-146.358	0/0:52:51,1:51:1801:1:36:0,-12.0553,-158.772	0/1:73:40,33:40:1417:33:1179:-84.442,0,-105.85	0/1:24:15,9:15:521:9:324:-22.2811,0,-39.9916	0/1:46:23,23:23:807:23:828:-60.9967,0,-59.1018	0/0:143:143,0:143:5021:0:0:0,-43.0473,-452.038	0/1:85:44,41:44:1561:41:1476:-107.549,0,-115.192	0/1:71:42,29:42:1482:29:1044:-72.9017,0,-112.3	0/0:69:68,1:68:2436:1:36:0,-17.1728,-215.897	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/1:26:17,9:17:595:9:324:-21.6791,0,-46.0499	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:93:54,39:54:1921:39:1357:-94.4302,0,-145.169	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:13:4,9:4:135:9:324:-25.5925,0,-8.56912	0/0:29:29,0:29:1002:0:0:0,-8.72987,-90.4841	0/1:100:49,51:49:1716:51:1820:-133.978,0,-124.619	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:155:153,2:153:5390:2:72:0,-39.8229,-478.398	0/1:160:81,79:81:2810:79:2836:-207.313,0,-204.971	0/1:53:26,27:26:915:27:963:-71.0313,0,-66.711	0/0:31:31,0:31:1094:0:0:0,-9.33193,-98.7683	0/1:113:61,51:61:2161:51:1811:-129.196,0,-160.678	0/1:85:18,67:18:635:67:2349:-186.08,0,-31.8894	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/0:48:47,1:47:1657:1:36:0,-10.8512,-145.817	0/1:76:39,37:39:1384:37:1314:-95.682,0,-101.981	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:53:13,40:13:464:40:1432:-113.223,0,-26.1429	0/1:42:25,17:25:881:17:612:-42.7702,0,-66.9626	0/1:120:53,67:53:1889:67:2390:-179.233,0,-134.163	0/0:58:58,0:58:2060:0:0:0,-17.4597,-185.672	0/0:92:92,0:92:3275:0:0:0,-27.6948,-294.971	0/1:56:24,32:24:856:32:1121:-84.338,0,-60.5034	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:38:24,14:24:864:14:504:-34.259,0,-66.6434	0/0:75:75,0:75:2641:0:0:0,-22.5772,-237.926	0/0:182:181,1:181:6420:1:32:0,-51.5881,-574.688	0/1:80:34,46:34:1203:46:1637:-122.909,0,-84.4926	0/0:34:34,0:34:1202:0:0:0,-10.235,-108.484	0/0:61:61,0:61:2168:0:0:0,-18.3628,-195.384	0/0:107:107,0:107:3775:0:0:0,-32.2102,-339.951	0/0:43:43,0:43:1522:0:0:0,-12.9443,-137.272	0/1:69:32,37:32:1113:37:1324:-98.691,0,-79.704	0/0:48:47,1:47:1664:1:36:0,-10.8512,-146.446	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/1:67:33,34:33:1175:34:1222:-90.118,0,-85.8879	0/1:47:11,36:11:396:36:1272:-100.632,0,-21.8343	0/0:42:41,1:41:1441:1:36:0,-9.04498,-126.386	0/0:70:70,0:70:2474:0:0:0,-21.0721,-222.914
chr11	3859228	.	T	C	81649.2	PASS	AB=0.482639;ABP=11.3041;AC=138;AF=0.734043;AN=188;AO=3942;CIGAR=1X;DP=5587;DPB=5587;DPRA=30.0269;EPP=8484.96;EPPR=3538.25;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.9926;MQMR=60;NS=94;NUMALT=1;ODDS=0.532808;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140943;QR=58883;RO=1644;RPL=3933;RPP=8484.96;RPPR=3538.25;RPR=9;RUN=1;SAF=0;SAP=8562.95;SAR=3942;SRF=0;SRP=3572.91;SRR=1644;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:10,7:10:356:7:252:-17.9114,0,-27.2637	0/1:59:36,23:36:1288:23:824:-56.7225,0,-98.4628	0/1:45:27,18:27:972:18:644:-44.7442,0,-74.2516	0/1:119:54,65:54:1932:65:2317:-172.966,0,-138.334	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:50:41,9:41:1468:9:324:-14.4544,0,-117.365	0/1:114:52,62:52:1868:62:2188:-162.867,0,-134.082	0/1:70:29,41:29:1032:41:1464:-110.983,0,-72.1214	0/1:74:42,32:42:1508:32:1148:-81.3536,0,-113.738	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:49:23,26:23:824:26:932:-69.4484,0,-59.7328	0/1:54:28,26:28:1004:26:932:-67.9432,0,-74.4202	1/1:39:0,39:0:0:39:1395:-125.848,-11.7402,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:35:0,35:0:0:35:1251:-112.894,-10.5361,0	0/1:46:15,31:15:540:31:1112:-86.544,0,-35.0892	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:43:22,21:22:792:21:752:-55.062,0,-58.6614	0/1:80:40,40:40:1436:40:1436:-105.455,0,-105.455	1/1:114:0,114:0:0:114:4075:-366.936,-34.3174,0	0/1:60:48,12:48:1716:12:432:-21.1594,0,-136.664	0/1:60:32,28:32:1140:28:992:-71.532,0,-84.8474	0/1:49:37,12:37:1332:12:432:-24.4707,0,-105.432	1/1:19:0,19:0:0:19:662:-59.9024,-5.71957,0	0/1:229:124,105:124:4420:105:3757:-269.391,0,-329.038	1/1:103:0,103:0:0:103:3664:-329.966,-31.0061,0	1/1:31:0,31:0:0:31:1107:-99.9402,-9.33193,0	1/1:118:0,118:0:0:118:4236:-381.418,-35.5215,0	0/1:80:34,46:34:1224:46:1656:-125.246,0,-86.3846	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:172:75,97:75:2684:97:3476:-261.274,0,-190.028	1/1:130:0,130:0:0:130:4656:-419.202,-39.1339,0	1/1:59:0,59:0:0:59:2115:-190.618,-17.7608,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:66:29,37:29:1044:37:1328:-99.9543,0,-74.4068	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	0/1:72:32,40:32:1152:40:1440:-108.224,0,-82.316	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:46:23,23:23:828:23:828:-60.9967,0,-60.9967	1/1:143:0,142:0:0:142:5070:-456.233,-42.7463,0	0/1:88:42,46:42:1504:46:1652:-122.478,0,-109.164	0/1:70:30,40:30:1064:40:1440:-108.826,0,-74.9996	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:94:39,55:39:1396:55:1965:-148.826,0,-97.6423	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:31:0,31:0:0:31:1102:-99.4891,-9.33193,0	0/1:99:50,49:50:1800:49:1744:-127.442,0,-132.48	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:149:2,147:2:72:147:5267:-467.328,-38.0167,0	0/1:164:82,82:82:2919:82:2929:-214.475,0,-213.577	0/1:51:26,25:26:928:25:887:-64.7956,0,-68.4857	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:110:50,60:50:1780:60:2160:-161.553,0,-127.37	0/1:87:68,19:68:2432:19:680:-35.3396,0,-192.946	0/1:14:3,11:3:108:11:377:-30.0435,0,-5.86075	1/1:50:0,50:0:0:50:1794:-161.742,-15.0515,0	0/1:76:36,40:36:1296:40:1406:-103.957,0,-94.0657	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:53:39,14:39:1384:14:496:-29.0197,0,-108.904	0/1:43:18,25:18:648:25:896:-68.0161,0,-45.7076	0/1:119:68,51:68:2444:51:1824:-128.619,0,-184.392	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:89:0,89:0:0:89:3191:-287.412,-26.7917,0	0/1:57:33,24:33:1176:24:855:-60.1115,0,-88.9891	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	0/1:38:14,24:14:504:24:849:-65.2887,0,-34.259	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:182:0,182:0:0:182:6495:-584.635,-54.7875,0	0/1:79:44,35:44:1584:35:1241:-88.2127,0,-119.07	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	1/1:60:0,60:0:0:60:2138:-192.687,-18.0618,0	1/1:111:0,111:0:0:111:3967:-357.222,-33.4143,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:69:37,32:37:1332:32:1148:-82.8588,0,-99.4113	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:67:33,34:33:1188:34:1203:-88.406,0,-87.0596	0/1:47:36,11:36:1292:11:386:-20.9274,0,-102.435	1/1:39:1,38:1:36:38:1338:-117.118,-8.1419,0	1/1:67:0,67:0:0:67:2391:-215.447,-20.169,0
chr11	3859304	.	C	G	34462.3	PASS	AB=0.485109;ABP=11.288;AC=51;AF=0.271277;AN=188;AO=2090;CIGAR=1X;DP=7852;DPB=7852;DPRA=1.2095;EPP=4541.39;EPPR=12486.8;GTI=2;LEN=1;MEANALT=1.11321;MQM=59.9612;MQMR=59.9696;NS=94;NUMALT=1;ODDS=0.640193;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74370;QR=204149;RO=5753;RPL=2090;RPP=4541.39;RPPR=12469.4;RPR=0;RUN=1;SAF=2090;SAP=4541.39;SAR=0;SRF=5751;SRP=12478.1;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:26,22:26:923:22:792:-57.1562,0,-68.9373	0/1:86:46,40:46:1602:40:1440:-104.009,0,-118.577	0/1:101:50,51:50:1771:51:1821:-133.765,0,-129.078	0/1:218:116,102:116:4083:102:3644:-262.541,0,-302.033	0/0:77:77,0:77:2747:0:0:0,-23.1793,-247.472	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/1:66:34,32:34:1220:32:1136:-82.6809,0,-90.2388	0/1:116:54,62:54:1906:62:2200:-163.287,0,-136.897	0/1:50:36,14:36:1296:14:504:-30.6466,0,-101.892	0/1:66:38,28:38:1368:28:991:-69.6355,0,-103.553	0/0:107:107,0:107:3800:0:0:0,-32.2102,-342.198	0/1:128:60,68:60:2135:68:2397:-177.455,0,-153.886	0/1:89:46,43:46:1609:43:1519:-110.211,0,-118.303	0/0:109:109,0:109:3812:0:0:0,-32.8123,-342.79	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:69:69,0:69:2403:0:0:0,-20.7711,-216.524	0/1:62:29,33:29:1040:33:1146:-84.7804,0,-75.2505	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:54:22,31:22:784:31:1101:-83.2309,0,-54.713	0/1:87:46,40:46:1639:40:1425:-102.298,0,-121.55	0/0:129:129,0:129:4566:0:0:0,-38.8329,-411.107	0/1:71:31,40:31:1093:40:1428:-107.444,0,-77.3045	0/1:111:52,59:52:1852:59:2085:-154.504,0,-133.546	0/1:80:41,39:41:1468:39:1396:-101.857,0,-108.334	0/0:82:82,0:82:2916:0:0:0,-24.6845,-262.674	0/1:238:124,114:124:4409:114:4058:-293.763,0,-325.336	0/0:206:206,0:206:7331:0:0:0,-62.0122,-659.842	0/0:44:44,0:44:1543:0:0:0,-13.2453,-139.158	0/0:214:213,1:213:7559:1:36:0,-60.8221,-676.752	0/1:155:88,67:88:3142:67:2395:-169.147,0,-236.345	0/0:119:119,0:119:4263:0:0:0,-35.8226,-383.847	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:174:90,84:90:3189:84:2997:-217.582,0,-234.855	0/0:109:109,0:109:3895:0:0:0,-32.8123,-350.744	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.673	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:116:72,43:72:2549:43:1540:-103.915,0,-194.682	0/0:34:34,0:34:1192:0:0:0,-10.235,-107.582	0/0:92:92,0:92:3283:0:0:0,-27.6948,-295.69	0/0:57:57,0:57:2013:0:0:0,-17.1587,-181.441	0/1:63:37,26:37:1328:26:909:-63.0871,0,-100.486	0/1:93:56,37:56:1999:37:1300:-89.3035,0,-152.187	0/1:89:46,43:46:1647:43:1520:-110.299,0,-121.726	0/0:135:134,1:134:4711:1:36:0,-37.0408,-420.552	0/1:94:48,46:48:1707:46:1627:-118.35,0,-125.618	0/1:114:53,61:53:1887:61:2170:-161.248,0,-135.79	0/0:99:99,0:99:3468:0:0:0,-29.802,-312.331	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:142:142,0:142:5066:0:0:0,-42.7463,-456.085	0/1:56:31,25:31:1101:25:891:-63.6511,0,-82.5407	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:143:78,65:78:2781:65:2305:-164.662,0,-207.482	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:96:96,0:96:3404:0:0:0,-28.8989,-306.575	0/1:118:56,62:56:1999:62:2215:-164.093,0,-144.662	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:146:146,0:146:5170:0:0:0,-43.9504,-465.443	0/1:146:74,72:74:2638:72:2580:-188.499,0,-193.716	0/1:55:20,35:20:716:35:1256:-96.7886,0,-48.2111	0/0:114:114,0:114:3999:0:0:0,-34.3174,-360.099	0/1:163:105,55:105:3728:55:1954:-127.61,0,-287.197	0/1:92:28,64:28:1000:64:2280:-177.767,0,-62.6206	0/1:59:35,24:35:1247:24:851:-59.1487,0,-94.7733	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.87	0/1:42:16,26:16:576:26:932:-71.5556,0,-39.5317	0/1:22:9,13:9:312:13:464:-35.4748,0,-21.7927	0/1:110:59,51:59:2112:51:1808:-129.886,0,-157.236	0/1:57:27,30:27:972:30:1079:-80.2641,0,-70.6392	0/1:144:80,61:80:2824:61:2165:-152.311,0,-210.817	0/0:140:139,1:139:4956:1:36:0,-38.5459,-442.591	0/0:66:66,0:66:2306:0:0:0,-19.868,-207.796	0/1:71:33,38:33:1147:38:1360:-101.327,0,-82.1591	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:68:32,36:32:1152:36:1275:-94.5822,0,-83.5201	0/0:70:70,0:70:2481:0:0:0,-21.0721,-223.543	0/0:148:148,0:148:5225:0:0:0,-44.5524,-470.389	0/1:60:38,22:38:1360:22:792:-53.5439,0,-104.582	0/0:70:70,0:70:2477:0:0:0,-21.0721,-223.183	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.616	0/0:134:134,0:134:4753:0:0:0,-40.338,-427.928	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/1:60:27,33:27:968:33:1184:-88.8065,0,-69.3756	0/0:95:95,0:95:3346:0:0:0,-28.5978,-301.358	0/0:53:53,0:53:1893:0:0:0,-15.9546,-170.646	0/1:159:75,84:75:2639:84:2979:-220.477,0,-189.892	0/1:68:18,50:18:629:50:1775:-139.562,0,-36.4637	0/0:75:75,0:75:2655:0:0:0,-22.5772,-239.194	0/0:87:87,0:87:3102:0:0:0,-26.1896,-279.407
chr11	3859531	.	A	G	138779	PASS	AB=0.503915;ABP=3.74151;AC=138;AF=0.734043;AN=188;AO=6934;CIGAR=1X;DP=9674;DPB=9674;DPRA=0;EPP=15051.3;EPPR=5935.49;GTI=0;LEN=1;MEANALT=1;MQM=59.9873;MQMR=59.9985;NS=94;NUMALT=1;ODDS=1.16734;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243101;QR=95569;RO=2740;RPL=6933;RPP=15051.3;RPPR=5935.49;RPR=1;RUN=1;SAF=6934;SAP=15060;SAR=0;SRF=2740;SRP=5952.84;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:24,30:24:851:30:1051:-78.6425,0,-60.6538	0/1:76:39,37:39:1339:37:1332:-97.3041,0,-97.9261	0/1:191:98,93:98:3415:93:3230:-233.425,0,-250.069	0/1:358:188,170:188:6565:170:5963:-429.013,0,-483.175	1/1:43:0,43:0:0:43:1500:-135.29,-12.9443,0	1/1:47:0,47:0:0:47:1635:-147.435,-14.1484,0	0/1:60:30,30:30:1067:30:1061:-77.7376,0,-78.2794	0/1:139:84,55:84:2935:55:1959:-134.742,0,-222.543	0/1:151:82,69:82:2875:69:2427:-173.229,0,-213.529	0/1:84:37,47:37:1287:47:1671:-125.39,0,-90.8435	1/1:37:0,37:0:0:37:1281:-115.588,-11.1381,0	0/1:88:45,43:45:1557:43:1453:-104.566,0,-113.925	0/1:79:39,40:39:1362:40:1392:-101.794,0,-99.0955	1/1:59:0,59:0:0:59:2010:-181.166,-17.7608,0	1/1:69:0,69:0:0:69:2393:-215.627,-20.7711,0	1/1:73:1,72:1:36:72:2484:-220.214,-18.3769,0	0/1:39:16,23:16:551:23:820:-62.3823,0,-38.1743	1/1:28:0,28:0:0:28:970:-87.6102,-8.42884,0	0/1:28:9,19:9:306:19:667:-51.9258,0,-19.4398	0/1:221:101,120:101:3559:120:4192:-310.936,0,-253.995	1/1:187:0,187:0:0:187:6610:-594.987,-56.2926,0	0/1:314:177,137:177:6152:137:4794:-337.094,0,-459.269	0/1:156:85,71:85:2969:71:2544:-182.25,0,-220.483	0/1:49:17,32:17:599:32:1134:-87.6174,0,-39.4876	1/1:110:0,110:0:0:110:3902:-351.372,-33.1133,0	0/1:366:157,209:157:5490:209:7365:-552.727,0,-384.06	1/1:237:5,232:5:176:232:8135:-715.986,-55.1591,0	1/1:30:0,30:0:0:30:1057:-95.441,-9.0309,0	1/1:436:1,435:1:36:435:15321:-1375.03,-127.651,0	0/1:151:62,89:62:2188:89:3126:-236.111,0,-151.731	1/1:105:0,105:0:0:105:3668:-330.324,-31.6082,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:15:0,15:0:0:15:508:-46.04,-4.51545,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	0/1:228:106,122:106:3622:122:4242:-313.331,0,-257.555	1/1:144:0,144:0:0:144:5029:-452.763,-43.3483,0	1/1:24:0,24:0:0:24:840:-75.9182,-7.22472,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:184:93,91:93:3220:91:3199:-232.745,0,-234.636	1/1:25:0,25:0:0:25:865:-78.1632,-7.52575,0	1/1:202:2,200:2:72:200:6999:-623.148,-53.9713,0	1/1:60:0,60:0:0:60:2106:-189.809,-18.0618,0	0/1:55:24,31:24:834:31:1040:-77.3454,0,-58.819	0/1:89:50,39:50:1765:39:1373:-97.0758,0,-132.339	0/1:144:92,52:92:3193:52:1837:-122.261,0,-244.246	1/1:235:3,232:3:108:232:8120:-720.754,-60.6669,0	0/1:136:59,77:59:2075:77:2700:-202.304,0,-146.081	0/1:123:53,70:53:1826:70:2488:-187.145,0,-127.59	1/1:71:0,71:0:0:71:2510:-226.152,-21.3731,0	0/1:9:2,7:2:68:7:243:-19.4982,0,-3.74844	1/1:101:0,101:0:0:101:3545:-319.261,-30.404,0	0/1:82:33,49:33:1128:49:1735:-131.749,0,-77.1345	1/1:9:0,9:0:0:9:311:-28.3237,-2.70927,0	0/1:150:70,80:70:2455:80:2758:-203.304,0,-176.052	1/1:64:0,64:0:0:64:2251:-202.85,-19.2659,0	0/1:6:5,1:5:168:1:36:-1.79209,0,-13.6447	0/1:23:10,13:10:360:13:460:-34.8117,0,-25.8206	1/1:73:1,72:1:36:72:2540:-225.252,-18.3769,0	0/1:80:50,30:50:1716:30:1051:-70.8172,0,-130.64	0/1:12:5,7:5:168:7:252:-19.4166,0,-11.8386	1/1:167:0,167:0:0:167:5889:-530.125,-50.272,0	0/1:241:126,115:126:4359:115:4001:-287.734,0,-319.946	0/1:67:36,31:36:1259:31:1087:-77.9694,0,-93.4398	1/1:126:0,126:0:0:126:4456:-401.214,-37.9298,0	0/1:182:90,92:90:3161:92:3238:-236.855,0,-229.93	0/1:169:95,74:95:3329:74:2618:-184.994,0,-248.958	0/1:33:17,16:17:592:16:560:-40.7948,0,-43.6724	1/1:41:0,41:0:0:41:1413:-127.459,-12.3422,0	0/1:39:26,13:26:907:13:457:-29.7232,0,-70.2042	0/1:22:4,18:4:135:18:622:-49.6794,0,-5.85985	0/1:71:24,47:24:817:47:1667:-128.944,0,-52.4686	0/1:101:43,58:43:1516:58:2042:-153.647,0,-106.329	0/1:204:103,101:103:3633:101:3556:-258.841,0,-265.768	1/1:150:1,149:1:36:149:5259:-469.853,-41.5562,0	1/1:113:0,113:0:0:113:3924:-353.354,-34.0164,0	0/1:87:48,39:48:1678:39:1382:-98.4877,0,-125.115	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:94:43,51:43:1499:51:1802:-134.163,0,-106.906	1/1:220:0,220:0:0:220:7727:-695.474,-66.2266,0	1/1:254:0,254:0:0:254:8900:-800.94,-76.4616,0	0/1:53:29,24:29:1015:24:848:-60.6851,0,-75.7063	1/1:52:0,52:0:0:52:1826:-164.62,-15.6536,0	1/1:51:0,51:0:0:51:1791:-161.472,-15.3525,0	1/1:141:1,140:1:36:140:4885:-436.214,-38.847,0	1/1:12:0,12:0:0:12:423:-38.4059,-3.61236,0	0/1:69:27,42:27:944:42:1481:-112.813,0,-64.503	1/1:61:0,61:0:0:61:2108:-189.987,-18.3628,0	1/1:25:0,25:0:0:25:862:-77.8932,-7.52575,0	0/1:75:32,43:32:1105:43:1470:-110.012,0,-77.177	0/1:53:36,17:36:1275:17:596:-38.0132,0,-99.0977	1/1:128:0,128:0:0:128:4493:-404.538,-38.5318,0	1/1:120:1,119:1:36:119:4074:-363.256,-32.5253,0
chr11	3878743	.	A	G	216324	PASS	AB=0.493304;ABP=5.88905;AC=138;AF=0.734043;AN=188;AO=10502;CIGAR=1X;DP=14258;DPB=14258;DPRA=0;EPP=22807.8;EPPR=8146.03;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.978;MQMR=59.9851;NS=94;NUMALT=1;ODDS=8.28435;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=371004;QR=132634;RO=3750;RPL=3;RPP=22781.8;RPPR=8050.77;RPR=10499;RUN=1;SAF=3;SAP=22781.8;SAR=10499;SRF=11;SRP=8050.77;SRR=3739;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:22,31:22:792:31:1090:-82.454,0,-55.6511	0/1:179:90,89:90:3180:89:3163:-231.012,0,-232.54	0/1:132:61,71:61:2163:71:2488:-184.434,0,-155.201	0/1:427:213,214:213:7539:214:7537:-549.837,0,-550.014	1/1:122:0,122:0:0:122:4306:-387.719,-36.7257,0	1/1:113:0,113:0:0:113:4019:-361.9,-34.0164,0	0/1:217:115,102:115:4055:102:3610:-259.782,0,-299.817	0/1:173:97,76:97:3459:76:2619:-183.874,0,-259.445	0/1:165:84,81:84:2944:81:2835:-205.72,0,-215.523	0/1:138:56,82:56:1977:82:2891:-218.884,0,-136.661	1/1:109:0,109:0:0:109:3824:-344.359,-32.8123,0	0/1:110:47,63:47:1650:63:2185:-163.8,0,-115.673	0/1:127:62,65:62:2150:65:2298:-168.849,0,-155.534	1/1:118:0,118:0:0:118:4095:-368.743,-35.5215,0	1/1:104:1,103:1:36:103:3650:-325.108,-27.7088,0	1/1:83:0,83:0:0:83:2949:-265.643,-24.9855,0	0/1:78:46,32:46:1620:32:1118:-77.4457,0,-122.606	1/1:87:0,87:0:0:87:3070:-276.531,-26.1896,0	0/1:76:34,42:34:1194:42:1487:-111.245,0,-84.8855	0/1:314:147,167:147:5212:167:5951:-441.17,0,-374.696	1/1:256:0,256:0:0:256:8998:-809.811,-77.0637,0	0/1:134:78,56:78:2770:56:1984:-138.494,0,-209.201	0/1:150:72,78:72:2553:78:2796:-206.725,0,-184.865	0/1:193:56,137:56:1994:137:4876:-380.895,0,-121.634	1/1:110:0,110:0:0:110:3884:-349.757,-33.1133,0	0/1:528:292,236:292:10342:236:8370:-594.356,0,-771.769	1/1:361:1,359:1:36:359:12688:-1138.18,-105.062,0	1/1:36:0,36:0:0:36:1258:-113.521,-10.8371,0	1/1:589:0,589:0:0:589:20923:-1882.56,-177.307,0	0/1:174:70,104:70:2489:104:3681:-279.114,0,-171.883	1/1:199:0,198:0:0:198:7022:-631.762,-59.6039,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:53:0,53:0:0:53:1881:-169.567,-15.9546,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:16:0,16:0:0:16:560:-50.7287,-4.81648,0	1/1:17:0,17:0:0:17:595:-53.8767,-5.11751,0	0/1:287:124,162:124:4424:162:5696:-426.309,0,-311.879	1/1:211:0,211:0:0:211:7461:-671.433,-63.5173,0	1/1:103:0,103:0:0:103:3641:-327.895,-31.0061,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:271:143,128:143:5080:128:4536:-326.828,0,-375.767	1/1:56:0,56:0:0:56:1987:-179.104,-16.8577,0	1/1:226:0,226:0:0:226:7992:-719.251,-68.0328,0	1/1:123:0,123:0:0:123:4360:-392.576,-37.0267,0	0/1:76:37,39:37:1319:39:1388:-102.341,0,-96.1329	0/1:138:78,60:78:2779:60:2104:-148.084,0,-208.809	0/1:186:92,94:92:3238:94:3317:-242.756,0,-235.65	1/1:311:0,311:0:0:311:11037:-993.229,-93.6203,0	0/1:95:48,47:48:1716:47:1663:-121.359,0,-126.127	0/1:137:73,64:73:2603:64:2288:-164.941,0,-193.277	1/1:305:0,305:0:0:305:10789:-970.924,-91.8142,0	0/1:27:19,8:19:680:8:288:-18.1396,0,-53.3887	1/1:164:0,164:0:0:164:5833:-525.085,-49.3689,0	0/1:115:61,54:61:2153:54:1871:-134.044,0,-159.417	1/1:43:0,43:0:0:43:1522:-137.272,-12.9443,0	0/1:204:110,94:110:3882:94:3244:-230.768,0,-288.166	1/1:77:0,77:0:0:77:2715:-244.591,-23.1793,0	0/1:21:12,9:12:415:9:315:-22.3656,0,-31.3587	0/1:39:12,27:12:428:27:964:-75.3367,0,-27.1177	1/1:120:0,120:0:0:120:4238:-381.573,-36.1236,0	0/1:151:77,74:77:2720:74:2568:-185.913,0,-199.587	0/1:18:11,7:11:371:7:239:-16.4242,0,-28.2966	1/1:364:2,361:2:72:361:12800:-1145.04,-102.704,0	0/1:227:123,104:123:4390:104:3706:-265.408,0,-326.939	0/1:94:40,54:40:1415:54:1920:-144.78,0,-99.3498	1/1:145:0,145:0:0:145:5173:-465.71,-43.6494,0	0/1:263:141,122:141:4949:122:4344:-311.967,0,-366.395	0/1:102:70,32:70:2500:32:1139:-72.1133,0,-194.548	0/1:41:25,16:25:892:16:568:-39.1096,0,-68.2575	1/1:95:0,95:0:0:95:3346:-301.358,-28.5979,0	0/1:102:50,52:50:1756:52:1800:-131.572,0,-127.616	0/1:27:17,10:17:604:10:345:-23.253,0,-46.5628	0/1:190:98,92:98:3443:92:3222:-233.008,0,-252.887	0/1:100:52,48:52:1819:48:1691:-122.372,0,-133.885	0/1:273:133,140:133:4659:140:4934:-362.031,0,-337.024	1/1:311:0,311:0:0:311:11054:-994.754,-93.6203,0	1/1:170:1,169:1:36:169:5949:-531.922,-47.5768,0	0/1:148:83,65:83:2955:65:2315:-163.787,0,-221.632	0/1:16:12,4:12:428:4:144:-8.49714,0,-34.0423	0/1:189:102,87:102:3603:87:3052:-218.014,0,-267.582	1/1:132:0,131:0:0:131:4623:-415.993,-39.4349,0	1/1:447:0,447:0:0:447:15826:-1424.04,-134.56,0	0/1:139:69,70:69:2436:70:2471:-180.801,0,-177.651	1/1:100:0,100:0:0:100:3552:-319.891,-30.103,0	1/1:142:0,142:0:0:142:4975:-447.904,-42.7463,0	1/1:199:0,199:0:0:199:6994:-629.535,-59.905,0	1/1:77:0,77:0:0:77:2724:-245.405,-23.1793,0	0/1:105:51,54:51:1802:54:1888:-138.588,0,-130.852	1/1:95:0,95:0:0:95:3333:-300.187,-28.5979,0	1/1:75:0,75:0:0:75:2643:-238.118,-22.5773,0	0/1:131:64,67:64:2218:67:2365:-173.673,0,-160.448	0/1:108:72,36:72:2550:36:1279:-82.9012,0,-197.239	1/1:238:0,238:0:0:238:8357:-752.148,-71.6451,0	1/1:146:0,145:0:0:145:5067:-455.97,-43.6494,0
chr11	3903388	.	C	T	352646	PASS	AB=0.512018;ABP=14.9101;AC=139;AF=0.739362;AN=188;AO=13145;CIGAR=1X;DP=17801;DPB=17801;DPRA=0;EPP=28521;EPPR=10089.5;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9785;MQMR=59.9953;NS=94;NUMALT=1;ODDS=5.47704;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=469073;QR=164293;RO=4649;RPL=6334;RPP=40.5967;RPPR=81.1445;RPR=6811;RUN=1;SAF=6331;SAP=41.5482;SAR=6814;SRF=2119;SRP=81.9106;SRR=2530;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:97:37,60:37:1332:60:2131:-162.821,0,-90.9825	0/1:265:124,141:124:4419:141:5023:-372.443,0,-318.111	0/1:292:130,162:130:4558:162:5795:-433.727,0,-322.484	0/1:413:192,221:192:6749:221:7928:-589.217,0,-483.163	1/1:140:3,137:3:108:137:4883:-429.547,-32.069,0	1/1:106:1,105:1:36:105:3744:-333.561,-28.3109,0	1/1:268:1,267:1:36:267:9492:-850.638,-77.0778,0	0/1:314:159,155:159:5586:155:5537:-403.931,0,-408.338	0/1:234:109,125:109:3863:125:4458:-330.321,0,-277.422	0/1:223:91,132:91:3241:132:4733:-358.998,0,-224.781	1/1:141:0,141:0:0:141:5056:-455.184,-42.4452,0	0/1:168:83,85:83:2948:85:3032:-222.537,0,-214.98	0/1:201:106,95:106:3728:95:3387:-244.539,0,-275.215	1/1:163:1,162:1:32:162:5747:-514.148,-45.8686,0	1/1:139:0,139:0:0:139:4979:-448.257,-41.8432,0	1/1:131:0,131:0:0:131:4688:-422.081,-39.4349,0	0/1:131:65,66:65:2286:66:2360:-173.224,0,-166.56	1/1:146:3,143:3:108:143:5091:-448.258,-33.8752,0	0/1:100:64,36:64:2276:36:1292:-86.2906,0,-175	0/1:321:150,171:150:5280:171:6117:-453.998,0,-378.705	1/1:351:2,349:2:72:349:12441:-1112.61,-98.8248,0	0/1:114:73,41:73:2581:41:1468:-98.0987,0,-198.219	0/1:193:101,92:101:3541:92:3266:-236.047,0,-260.8	0/1:265:107,158:107:3822:158:5659:-429.652,0,-264.403	1/1:178:0,178:0:0:178:6365:-572.925,-53.5833,0	0/1:540:267,271:267:9452:271:9640:-705.391,0,-688.485	1/1:364:1,361:1:36:361:12922:-1159.19,-105.734,0	1/1:77:0,77:0:0:77:2751:-247.829,-23.1793,0	1/1:499:0,499:0:0:499:17782:-1599.99,-150.214,0	0/1:201:82,119:82:2848:119:4218:-319.294,0,-196.049	1/1:264:0,264:0:0:264:9441:-849.631,-79.4719,0	1/1:8:0,8:0:0:8:269:-24.5361,-2.40824,0	1/1:23:0,23:0:0:23:809:-73.1283,-6.92369,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:345:-31.3808,-3.0103,0	1/1:31:0,31:0:0:31:1101:-99.3984,-9.33193,0	0/1:370:169,201:169:6023:201:7181:-534.965,0,-430.793	1/1:200:0,200:0:0:200:7155:-644.002,-60.206,0	1/1:161:0,161:0:0:161:5731:-515.905,-48.4658,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:270:103,167:103:3650:167:5941:-453.52,0,-247.426	1/1:93:0,93:0:0:93:3320:-299.016,-27.9958,0	1/1:283:0,283:0:0:283:10040:-903.537,-85.1915,0	1/1:225:2,223:2:72:223:7967:-710.215,-60.895,0	0/1:128:69,59:69:2445:59:2098:-150.557,0,-181.772	0/1:178:88,90:88:3083:90:3203:-234.908,0,-224.114	0/1:159:80,79:80:2872:79:2827:-206.805,0,-210.851	1/1:297:1,296:1:36:296:10583:-948.784,-85.8076,0	0/1:185:76,109:76:2708:109:3901:-295.592,0,-188.271	0/1:266:131,135:131:4656:135:4843:-355.948,0,-339.129	1/1:244:1,243:1:36:243:8642:-774.179,-69.853,0	0/1:24:11,13:11:387:13:468:-35.2349,0,-27.9412	1/1:284:0,284:0:0:284:10197:-917.638,-85.4925,0	0/1:81:36,45:36:1273:45:1620:-121.707,0,-90.4875	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:233:99,133:99:3507:133:4759:-358.268,0,-245.639	1/1:112:0,112:0:0:112:3998:-360.009,-33.7154,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	1/1:162:0,162:0:0:162:5782:-520.495,-48.7669,0	0/1:258:144,114:144:5079:114:4051:-287.11,0,-379.589	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	1/1:320:0,320:0:0:320:11443:-1029.73,-96.3296,0	0/1:358:164,194:164:5824:194:6903:-513.566,0,-416.505	0/1:162:83,79:83:2905:79:2823:-205.542,0,-212.916	1/1:150:2,148:2:72:148:5296:-469.937,-38.3178,0	0/1:337:140,197:140:4872:197:7027:-531.045,0,-337.186	0/1:215:134,80:134:4745:80:2844:-191.417,0,-362.429	0/1:63:34,29:34:1212:29:1040:-74.9495,0,-90.4214	1/1:183:0,183:0:0:183:6561:-590.56,-55.0885,0	0/1:170:85,85:85:3011:85:3037:-222.385,0,-220.045	0/1:54:28,26:28:991:26:928:-67.5826,0,-73.2479	0/1:182:83,99:83:2901:99:3481:-258.526,0,-206.536	0/1:135:73,61:73:2567:61:2158:-153.865,0,-190.66	0/1:386:198,188:198:6965:188:6714:-488.138,0,-510.722	1/1:313:1,312:1:36:312:11165:-1001.14,-90.6241,0	1/1:151:0,151:0:0:151:5369:-483.342,-45.4555,0	0/1:185:96,89:96:3407:89:3177:-230.462,0,-251.156	0/1:31:12,19:12:419:19:658:-50.2085,0,-28.7107	0/1:243:125,118:125:4423:118:4192:-304.309,0,-325.094	1/1:203:0,203:0:0:203:7233:-651.024,-61.1091,0	1/1:478:1,477:1:32:477:16974:-1524.11,-140.693,0	0/1:186:80,106:80:2851:106:3808:-286.925,0,-200.836	1/1:164:1,163:1:36:163:5832:-521.392,-45.7706,0	1/1:207:0,207:0:0:207:7436:-669.281,-62.3132,0	1/1:252:2,250:2:72:250:8889:-792.889,-69.0228,0	1/1:84:0,84:0:0:84:2988:-269.151,-25.2865,0	0/1:137:76,61:76:2645:61:2145:-152.073,0,-197.053	1/1:140:1,139:1:36:139:4979:-444.659,-38.5459,0	1/1:91:0,91:0:0:91:3238:-291.639,-27.3937,0	0/1:169:94,75:94:3310:75:2666:-189.309,0,-247.245	0/1:202:142,60:142:5048:60:2156:-133.499,0,-393.659	1/1:215:0,215:0:0:215:7667:-690.067,-64.7215,0	1/1:236:1,235:1:36:235:8405:-752.857,-67.4448,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chr11	4006373	.	C	A	96146.1	PASS	AB=0.41217;ABP=373.01;AC=136;AF=0.723404;AN=188;AO=5220;CIGAR=1X;DP=8478;DPB=8478;DPRA=30.3763;EPP=11338.1;EPPR=7042.95;GTI=10;LEN=1;MEANALT=1.04301;MQM=40.4944;MQMR=54.1441;NS=94;NUMALT=1;ODDS=0.280237;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186817;QR=115527;RO=3254;RPL=5220;RPP=11338.1;RPPR=7042.95;RPR=0;RUN=1;SAF=5220;SAP=11338.1;SAR=0;SRF=3254;SRP=7068.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:30,15:30:1076:15:536:-32.2994,0,-83.1396	0/1:142:62,80:62:2159:80:2868:-201.106,0,-151.022	0/1:144:75,69:75:2668:69:2484:-166.049,0,-195.637	0/1:215:104,111:104:3683:111:3965:-282.036,0,-266.405	1/1:35:0,35:0:0:35:1233:-106.321,-10.5361,0	1/1:42:0,42:0:0:42:1498:-126.636,-12.6433,0	1/1:80:0,80:0:0:80:2872:-251.165,-24.0824,0	0/1:124:84,40:84:2988:40:1436:-84.9404,0,-229.908	0/1:79:45,34:45:1564:34:1216:-79.9386,0,-116.345	0/1:156:84,72:84:2985:72:2569:-176.766,0,-221.5	1/1:47:0,47:0:0:47:1665:-144.098,-14.1484,0	0/1:74:51,22:51:1809:22:792:-45.2201,0,-140.314	0/1:99:69,30:69:2396:30:1080:-61.7464,0,-184.142	1/1:57:0,57:0:0:57:2052:-175.916,-17.1587,0	1/1:44:0,44:0:0:44:1573:-136.926,-13.2453,0	1/1:41:0,41:0:0:41:1472:-127.423,-12.3422,0	0/1:96:61,35:61:2145:35:1252:-77.6804,0,-163.206	1/1:72:0,72:0:0:72:2577:-216.761,-21.6742,0	0/1:43:25,18:25:885:18:648:-42.2736,0,-66.6459	0/1:154:99,55:99:3528:55:1976:-126.606,0,-270.444	1/1:129:0,129:0:0:129:4604:-395.407,-38.8329,0	0/1:146:124,21:124:4383:21:756:-22.2162,0,-349.968	0/1:89:65,24:65:2296:24:856:-47.0959,0,-179.564	0/1:108:44,64:44:1567:64:2300:-164.731,0,-108.464	1/1:37:0,37:0:0:37:1324:-114.544,-11.1381,0	0/1:247:142,105:142:5095:105:3736:-253.883,0,-383.067	1/1:154:0,154:0:0:154:5487:-470.431,-46.3586,0	1/1:31:0,31:0:0:31:1108:-95.2289,-9.33193,0	1/1:176:0,176:0:0:176:6308:-556.555,-52.9813,0	0/1:190:93,97:93:3300:97:3472:-242.626,0,-239.281	1/1:129:0,129:0:0:129:4619:-402.63,-38.8329,0	1/1:9:0,9:0:0:9:324:-28.3969,-2.70927,0	1/1:16:0,16:0:0:16:576:-49.7277,-4.81648,0	1/1:3:0,3:0:0:3:108:-9.48528,-0.90309,0	1/1:4:0,4:0:0:4:144:-12.5341,-1.20412,0	1/1:3:0,3:0:0:3:108:-9.48528,-0.90309,0	0/1:210:125,85:125:4445:85:3044:-204.974,0,-336.73	0/1:143:83,60:83:2976:60:2152:-142.498,0,-223.461	1/1:63:0,63:0:0:63:2260:-191.573,-18.9649,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.93145	0/1:138:69,69:69:2464:69:2463:-171.484,0,-179.893	1/1:43:0,43:0:0:43:1520:-129.506,-12.9443,0	1/1:87:1,86:1:36:86:3075:-262.068,-22.5964,0	1/1:66:0,66:0:0:66:2372:-206.969,-19.868,0	0/1:62:34,28:34:1220:28:995:-68.0578,0,-91.3588	0/1:83:55,28:55:1942:28:1008:-63.6713,0,-149	0/1:108:55,53:55:1931:53:1886:-126.65,0,-140.741	1/1:137:3,134:3:108:134:4804:-408.681,-31.1732,0	0/1:86:60,26:60:2151:26:936:-55.8818,0,-167.273	0/1:218:121,97:121:4280:97:3480:-237.521,0,-318.496	1/1:151:0,151:0:0:151:5404:-477.194,-45.4555,0	0/1:6:3,3:3:108:3:108:-7.91139,0,-8.17494	1/1:105:0,105:0:0:105:3760:-317.988,-31.6082,0	0/1:55:32,23:32:1132:23:820:-56.0765,0,-84.6776	1/1:12:0,12:0:0:12:432:-37.1489,-3.61236,0	0/1:149:78,70:78:2787:70:2500:-170.425,0,-205.549	1/1:29:0,29:0:0:29:1036:-90.4472,-8.72987,0	0/1:12:9,3:9:320:3:108:-5.69765,0,-25.5125	0/1:29:20,9:20:720:9:324:-20.2663,0,-56.3758	1/1:64:0,64:0:0:64:2292:-197.276,-19.2659,0	0/1:138:92,46:92:3249:46:1648:-102.403,0,-249.262	0/1:5:4,1:4:135:1:36:-1.99755,0,-10.9601	0/1:231:120,111:120:4280:111:3968:-280.509,0,-315.555	0/1:163:82,81:82:2919:81:2894:-202.774,0,-213.034	0/1:100:66,34:66:2345:34:1208:-73.9933,0,-180.454	1/1:96:2,94:2:72:94:3372:-285.838,-22.0671,0	0/1:163:92,71:92:3300:71:2546:-173.254,0,-247.26	0/1:63:14,49:14:500:49:1743:-133.402,0,-26.3407	0/1:47:34,13:34:1216:13:449:-25.0913,0,-94.8254	1/1:42:0,42:0:0:42:1512:-128.576,-12.6433,0	0/1:83:47,36:47:1684:36:1296:-88.7646,0,-126.731	0/1:35:28,7:28:971:7:248:-11.4715,0,-77.0975	1/1:66:0,66:0:0:66:2367:-198.811,-19.868,0	0/1:49:28,21:28:1004:21:752:-49.3004,0,-75.1932	0/1:163:109,54:109:3880:54:1927:-115.295,0,-299.405	1/1:125:0,125:0:0:125:4465:-388.472,-37.6288,0	1/1:51:0,51:0:0:51:1815:-154.523,-15.3525,0	0/1:146:83,63:83:2955:63:2243:-144.746,0,-221.427	0/1:22:13,9:13:468:9:324:-21.3298,0,-35.5472	0/1:109:69,40:69:2450:40:1424:-90.3992,0,-187.228	1/1:140:0,140:0:0:140:5012:-422.644,-42.1442,0	1/1:143:2,141:2:72:141:5068:-434.559,-36.4973,0	0/1:101:72,29:72:2541:29:1040:-60.1859,0,-197.763	1/1:60:0,60:0:0:60:2160:-188.043,-18.0618,0	1/1:92:0,92:0:0:92:3282:-286.088,-27.6948,0	0/1:170:98,72:98:3486:72:2581:-173.926,0,-262.222	1/1:24:0,24:0:0:24:864:-73.383,-7.22472,0	0/1:89:49,40:49:1732:40:1440:-95.6732,0,-128.807	1/1:56:0,56:0:0:56:2008:-169.777,-16.8577,0	1/1:42:0,42:0:0:42:1508:-128.895,-12.6433,0	0/1:122:96,26:96:3383:26:932:-43.0753,0,-267.093	0/1:73:46,27:46:1630:27:964:-62.6134,0,-124.768	1/1:99:0,99:0:0:99:3552:-310.036,-29.802,0	1/1:51:0,50:0:0:50:1796:-156.691,-15.0515,0
chr11	4073542	.	GG	TG,TT	138293	PASS	AB=0.483879,0.514315;ABP=11.7617,9.91118;AC=136,48;AF=0.73913,0.26087;AN=184;AO=4664,2000;CIGAR=1X1M,2X;DP=6677;DPB=6677;DPRA=0,1.31548;EPP=10130.8,4345.96;EPPR=9.52472;GTI=2;LEN=1,2;MEANALT=1.68478,2.12963;MQM=59.8879,59.235;MQMR=57.3333;NS=92;NUMALT=2;ODDS=0.828162;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=164827,69578;QR=68;RO=3;RPL=4664,2000;RPP=10130.8,4345.96;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10130.8,4345.96;SAR=4664,2000;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:50:0,28,22:0:0:28,22:961,747:-138.905,-60.8955,-52.4667,-78.3499,0,-71.7273	1/2:49:0,14,34:0:0:14,34:492,1200:-137.791,-97.7449,-93.5304,-40.0759,0,-29.8409	1/2:79:0,38,41:0:0:38,41:1336,1415:-224.031,-115.281,-103.842,-109.099,0,-96.7566	1/2:74:1,40,33:1:25:40,33:1424,1147:-207.158,-91.3936,-81.2984,-114.217,0,-106.23	1/1:49:0,47,1:0:0:47,1:1657,36:-149.056,-14.1484,0,-146.119,-11.211,-145.817	1/1:33:0,33,0:0:0:33,0:1176,0:-106.148,-9.93399,0,-106.148,-9.93399,-106.148	1/1:85:0,85,0:0:0:85,0:3008,0:-270.952,-25.5876,0,-270.952,-25.5876,-270.952	1/1:155:0,155,0:0:0:155,0:5484,0:-493.653,-46.6597,0,-493.653,-46.6597,-493.653	1/2:88:0,41,47:0:0:41,47:1456,1647:-252.885,-134.244,-121.902,-118.994,0,-104.845	1/2:57:0,19,38:0:0:19,38:672,1328:-163.103,-108.367,-102.648,-55.0873,0,-43.6481	1/1:54:0,54,0:0:0:54,0:1914,0:-172.467,-16.2556,0,-172.467,-16.2556,-172.467	1/2:103:0,50,53:0:0:50,53:1792,1870:-298.666,-152.511,-137.459,-146.511,0,-130.556	1/2:70:0,35,35:0:0:35,35:1248,1254:-204.231,-102.5,-91.9635,-102.089,0,-91.5528	1/1:60:1,57,0:1:20:57,0:2044,0:-182.126,-15.7133,0,-182.427,-17.1587,-183.923	1/1:61:0,61,0:0:0:61,0:2163,0:-194.936,-18.3628,0,-194.936,-18.3628,-194.936	1/1:55:0,55,0:0:0:55,0:1959,0:-176.585,-16.5567,0,-176.585,-16.5567,-176.585	1/2:29:0,15,14:0:0:15,14:525,480:-82.0273,-39.31,-34.7945,-43.0635,0,-38.849	1/1:40:0,40,0:0:0:40,0:1416,0:-127.734,-12.0412,0,-127.734,-12.0412,-127.734	1/2:50:0,33,17:0:0:33,17:1164,612:-145.036,-50.2783,-40.3443,-95.1153,0,-89.9978	1/2:98:0,54,44:0:0:54,44:1922,1505:-279.092,-122.439,-106.183,-157.001,0,-143.756	1/1:45:0,45,0:0:0:45,0:1604,0:-144.64,-13.5464,0,-144.64,-13.5464,-144.64	1/2:120:0,35,85:0:0:35,85:1243,2955:-341.869,-240.583,-230.047,-101.639,0,-76.0511	1/2:94:0,58,36:0:0:58,36:2040,1268:-269.612,-103.553,-86.0934,-166.411,0,-155.573	1/2:19:0,14,5:0:0:14,5:497,178:-55.3578,-14.8635,-10.6491,-40.8499,0,-39.3448	1/1:73:0,73,0:0:0:73,0:2580,0:-232.428,-21.9752,0,-232.428,-21.9752,-232.428	1/2:171:0,89,82:0:0:89,82:3117,2812:-482.235,-228.617,-201.825,-253.964,0,-229.28	1/1:138:0,138,0:0:0:138,0:4805,0:-432.583,-41.5421,0,-432.583,-41.5421,-432.583	1/1:34:0,34,0:0:0:34,0:1208,0:-109.026,-10.235,0,-109.026,-10.235,-109.026	1/1:153:0,153,0:0:0:153,0:5437,0:-489.43,-46.0576,0,-489.43,-46.0576,-489.43	1/2:92:0,47,45:0:0:47,45:1688,1563:-264.603,-126.909,-112.76,-138.046,0,-124.5	1/1:69:0,68,1:0:0:68,1:2365,36:-212.735,-20.47,0,-209.798,-17.1728,-209.497	1/2:5:0,1,4:0:0:1,4:36,140:-14.6801,-11.7407,-11.4396,-3.29724,0,-2.09312	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:4:0,4,0:0:0:4,0:136,0:-12.5755,-1.20412,0,-12.5755,-1.20412,-12.5755	1/1:6:0,6,0:0:0:6,0:208,0:-19.0591,-1.80618,0,-19.0591,-1.80618,-19.0591	1/2:172:0,76,95:0:0:76,95:2663,3359:-490.243,-273.56,-250.682,-216.675,0,-188.077	1/2:300:0,138,161:0:0:138,161:4813,5450:-833.083,-441.649,-400.107,-391.42,0,-342.954	1/1:69:0,68,1:0:0:68,1:2402,36:-216.076,-20.47,0,-213.139,-17.1728,-212.838	.:.:.:.:.:.:.:.	1/2:52:0,32,20:0:0:32,20:1132,688:-148.396,-56.1987,-46.5658,-92.545,0,-86.5244	1/1:45:0,45,0:0:0:45,0:1608,0:-145.01,-13.5464,0,-145.01,-13.5464,-145.01	1/1:134:0,133,1:0:0:133,1:4710,36:-423.598,-40.037,0,-420.66,-36.7397,-420.359	1/1:42:0,42,0:0:0:42,0:1496,0:-134.935,-12.6433,0,-134.935,-12.6433,-134.935	1/2:63:0,20,43:0:0:20,43:705,1513:-180.911,-123.51,-117.49,-57.7531,0,-44.8088	1/2:115:0,70,45:0:0:70,45:2439,1569:-326.285,-127.946,-106.874,-198.687,0,-185.141	1/2:86:0,38,48:0:0:38,48:1314,1677:-243.371,-136.602,-125.163,-107.116,0,-92.6667	1/1:137:0,137,0:0:0:137,0:4833,0:-435.131,-41.2411,0,-435.131,-41.2411,-435.131	1/2:83:0,47,36:0:0:47,36:1646,1262:-236.685,-102.76,-88.6113,-134.275,0,-123.438	1/2:76:0,50,25:0:0:50,25:1764,878:-215.081,-71.4406,-56.3891,-143.633,0,-136.107	1/1:85:0,85,0:0:0:85,0:3005,0:-270.68,-25.5876,0,-270.68,-25.5876,-270.68	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:76:0,76,0:0:0:76,0:2720,0:-245.043,-22.8783,0,-245.043,-22.8783,-245.043	1/2:22:0,15,7:0:0:15,7:532,250:-64.0742,-20.7327,-16.2172,-43.6976,0,-41.5904	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:67:0,36,31:0:0:36,31:1265,1085:-191.499,-88.5353,-77.6982,-103.314,0,-93.9821	1/1:31:0,31,0:0:0:31,0:1086,0:-98.0472,-9.33193,0,-98.0472,-9.33193,-98.0472	.:.:.:.:.:.:.:.	1/2:10:0,6,4:0:0:6,4:216,144:-29.734,-12.10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chr11	4075156	.	T	G	35989	PASS	AB=0.521667;ABP=32.463;AC=92;AF=0.5;AN=184;AO=3781;CIGAR=1X;DP=7239;DPB=7239;DPRA=53.6;EPP=8213.35;EPPR=7501.11;GTI=6;LEN=1;MEANALT=1.01111;MQM=28.3049;MQMR=59.4758;NS=92;NUMALT=1;ODDS=0.285272;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135327;QR=123997;RO=3457;RPL=0;RPP=8213.35;RPPR=7509.79;RPR=3781;RUN=1;SAF=3781;SAP=8213.35;SAR=0;SRF=3456;SRP=7501.11;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:6:3,3:3:108:3:108:-5.85519,0,-8.26899	0/1:114:52,62:52:1864:62:2220:-120.011,0,-133.652	0/1:64:30,34:30:1080:34:1216:-64.5882,0,-78.2473	0/1:72:38,34:38:1360:34:1216:-62.9477,0,-98.7703	0/1:44:18,26:18:648:26:913:-50.5329,0,-45.2666	0/1:27:10,17:10:356:17:612:-34.0097,0,-24.2534	0/1:60:29,31:29:1040:31:1112:-58.4782,0,-75.8526	0/1:133:75,57:75:2696:57:2044:-101.091,0,-201.983	0/1:41:23,18:23:824:18:644:-32.184,0,-62.1411	0/1:62:27,35:27:972:35:1233:-67.0107,0,-69.134	0/1:85:40,45:40:1428:45:1600:-86.731,0,-103.16	0/1:120:55,65:55:1955:65:2321:-125.008,0,-140.101	0/1:159:89,70:89:3200:70:2500:-124.899,0,-240.289	0/1:124:58,66:58:2080:66:2368:-126.783,0,-150.073	0/1:119:66,53:66:2372:53:1885:-94.7073,0,-177.915	0/1:107:41,66:41:1457:66:2364:-130.213,0,-99.2138	0/1:168:77,91:77:2756:91:3268:-174.942,0,-193.507	0/1:130:65,65:65:2321:65:2324:-121.345,0,-169.517	0/1:76:27,49:27:972:49:1752:-96.8434,0,-64.9196	0/1:99:49,50:49:1748:50:1788:-92.8812,0,-125.548	0/1:64:28,36:28:1000:36:1292:-69.5079,0,-71.0495	0/1:35:15,20:15:536:20:720:-38.9892,0,-35.7725	0/1:45:21,24:21:752:24:849:-45.1831,0,-53.5308	0/1:46:25,21:25:896:21:756:-38.1405,0,-64.8534	0/1:16:10,6:10:356:6:216:-10.2326,0,-27.5648	0/1:178:79,99:79:2836:99:3560:-191.144,0,-201.825	0/1:81:31,50:31:1116:50:1781:-99.3898,0,-76.2985	0/1:81:34,47:34:1220:47:1688:-91.558,0,-85.6536	0/1:50:24,26:24:856:26:936:-49.2493,0,-60	0/1:41:16,25:16:576:25:896:-49.4222,0,-39.7627	0/1:69:32,37:32:1148:37:1332:-70.6181,0,-82.8588	0/1:6:4,2:4:144:2:68:-3.31513,0,-11.436	0/1:8:1,7:1:36:7:252:-15.1035,0,-1.19003	0/1:3:1,2:1:36:2:72:-4.29569,0,-2.69518	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	.:.:.:.:.:.:.:.	0/1:328:183,145:183:6560:145:5189:-258.35,0,-491.247	0/1:38:21,17:21:756:17:608:-30.4637,0,-56.8582	0/1:84:42,42:42:1500:42:1512:-77.9165,0,-109.45	.:.:.:.:.:.:.:.	0/1:81:38,43:38:1364:43:1544:-82.4749,0,-98.6773	0/1:74:33,41:33:1188:41:1472:-80.4243,0,-84.8826	0/1:70:40,30:40:1432:30:1076:-53.0153,0,-107.915	0/1:162:75,87:75:2692:87:3098:-165.156,0,-191.275	0/1:171:84,87:84:3020:87:3108:-162.882,0,-219.853	0/1:30:19,11:19:684:11:396:-18.3311,0,-52.8594	0/1:62:28,34:28:1008:34:1220:-65.2639,0,-72.3725	0/1:95:39,56:39:1400:56:1989:-108.785,0,-97.6316	0/1:48:9,39:9:324:39:1396:-81.7177,0,-15.0564	0/1:85:34,51:34:1220:51:1832:-101.738,0,-84.4495	0/1:65:33,32:33:1188:32:1144:-59.362,0,-87.6616	0/1:7:4,3:4:144:3:108:-5.55416,0,-11.2064	0/1:74:31,43:31:1108:43:1548:-83.8884,0,-76.7321	0/1:17:12,5:12:432:5:180:-7.46902,0,-34.1037	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:59:21,38:21:752:38:1349:-76.2094,0,-50.2455	0/1:28:10,18:10:360:18:648:-36.1713,0,-24.3155	0/1:8:4,4:4:140:4:144:-7.71571,0,-10.5363	1/1:8:0,8:0:0:8:288:-19.9743,-2.40824,0	0/1:35:8,27:8:288:27:968:-56.922,0,-15.7314	0/1:157:78,79:78:2800:79:2836:-148.175,0,-204.978	1/1:5:0,5:0:0:5:180:-12.5865,-1.50515,0	0/1:70:28,42:28:1004:42:1512:-82.63,0,-69.6038	0/1:113:52,61:52:1860:61:2180:-117.597,0,-133.384	0/1:39:16,23:16:572:23:824:-47.4059,0,-40.0733	0/1:19:8,11:8:288:11:396:-21.3976,0,-20.5478	0/1:96:42,54:42:1496:54:1913:-103.492,0,-105.86	0/1:50:21,29:21:752:29:1044:-56.637,0,-52.8848	0/1:52:23,29:23:828:29:1017:-56.0567,0,-59.1906	0/1:51:26,25:26:936:25:900:-46.4856,0,-69.1371	0/1:164:97,67:97:3488:67:2400:-118.127,0,-264.552	0/1:9:2,7:2:72:7:248:-14.7279,0,-4.12745	0/1:10:5,5:5:180:5:180:-9.57623,0,-13.5418	0/1:46:26,20:26:932:20:716:-35.6041,0,-70.3515	0/1:92:47,45:47:1684:45:1616:-84.0862,0,-124.083	0/1:78:34,44:34:1220:44:1568:-84.3536,0,-86.6265	0/1:59:37,22:37:1328:22:784:-36.5421,0,-102.061	0/1:80:39,41:39:1400:41:1468:-77.673,0,-102.217	0/1:4:1,3:1:36:3:108:-6.45725,0,-2.39415	0/1:93:36,57:36:1292:57:2040:-112.424,0,-88.588	0/1:65:38,27:38:1356:27:964:-47.049,0,-102.631	0/1:121:61,60:61:2192:60:2122:-110.901,0,-160.42	0/1:165:83,82:83:2980:82:2940:-152.801,0,-218.496	0/1:97:43,54:43:1544:54:1940:-103.98,0,-110.053	0/1:227:126,101:126:4528:101:3620:-180.924,0,-338.934	0/1:269:132,137:132:4736:137:4920:-258.132,0,-345.283	0/1:68:38,30:38:1364:30:1072:-53.5337,0,-102.521	0/1:130:60,70:60:2156:70:2512:-134.14,0,-155.173	0/1:109:47,62:47:1688:62:2216:-120.767,0,-119.255	0/1:54:28,26:28:1008:26:936:-48.8137,0,-74.7109	0/1:96:39,57:39:1392:57:2048:-111.709,0,-96.574	0/1:114:50,64:50:1796:64:2292:-124.349,0,-126.774	0/1:55:21,34:21:752:34:1220:-67.2046,0,-51.4496	0/1:217:109,108:109:3924:108:3872:-202.599,0,-287.188
chr11	4114040	.	T	A	22223.2	PASS	AB=0.443835;ABP=87.8954;AC=43;AF=0.231183;AN=186;AO=1403;CIGAR=1X;DP=7839;DPB=7839;DPRA=0.86026;EPP=3040.91;EPPR=1200.24;GTI=5;LEN=1;MEANALT=1.03922;MQM=59.9644;MQMR=59.3875;NS=93;NUMALT=1;ODDS=3.55024;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50268;QR=229872;RO=6431;RPL=0;RPP=3049.59;RPPR=11960.9;RPR=1403;RUN=1;SAF=1402;SAP=3040.91;SAR=1;SRF=4397;SRP=1888.41;SRR=2034;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:16,33:16:572:33:1184:-92.1178,0,-37.0492	0/1:29:16,13:16:553:13:459:-32.9149,0,-41.3288	0/1:62:28,34:28:1004:34:1220:-91.4348,0,-72.0111	0/1:100:34,66:34:1224:66:2372:-183.635,0,-80.364	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.446	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8411	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.704	0/0:49:49,0:49:1736:0:0:0,-14.7505,-156.476	0/1:55:19,36:19:676:36:1292:-100.027,0,-44.576	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:337:336,0:336:11999:0:0:0,-101.146,-1078.97	0/1:113:66,47:66:2353:47:1688:-118.191,0,-177.975	0/1:67:41,26:41:1472:26:928:-63.6692,0,-112.579	0/0:117:117,0:117:4200:0:0:0,-35.2205,-377.386	0/0:95:95,0:95:3411:0:0:0,-28.5978,-307.187	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.102	0/1:66:59,7:59:2099:7:252:-3.16098,0,-169.287	0/0:72:72,0:72:2569:0:0:0,-21.6742,-231.397	0/1:78:70,8:70:2490:8:288:-2.78707,0,-200.826	0/1:74:35,39:35:1256:39:1404:-104.383,0,-91.0691	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.698	0/1:44:5,39:5:180:39:1400:-113.054,0,-3.30674	0/1:71:27,44:27:972:44:1572:-120.398,0,-66.4248	0/1:35:16,19:16:576:19:684:-51.3543,0,-41.6307	0/0:27:27,0:27:964:0:0:0,-8.12781,-86.3913	0/1:116:30,86:30:1072:86:3096:-243.943,0,-61.8705	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.643	0/0:60:60,0:60:2147:0:0:0,-18.0618,-193.489	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.763	0/1:43:12,31:12:424:31:1112:-87.4471,0,-25.5521	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.332	0/0:60:58,1:58:2071:1:36:0,-14.5219,-183.042	0/0:157:155,1:155:5520:1:28:0,-44.5194,-493.934	0/0:174:174,0:174:6211:0:0:0,-52.3792,-557.753	0/0:398:398,0:398:14216:0:0:0,-119.81,-1274.6	0/0:219:219,0:219:7856:0:0:0,-65.9256,-706.587	0/1:236:145,91:145:5160:91:3268:-223.296,0,-393.438	0/1:43:7,36:7:252:36:1296:-104,0,-10.0847	0/0:304:304,0:304:10891:0:0:0,-91.5131,-979.143	0/0:95:93,2:93:3322:2:72:0,-21.7611,-292.235	0/1:53:29,24:29:1021:24:864:-62.128,0,-76.2277	0/0:162:160,0:160:5732:0:0:0,-48.1648,-515.553	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.636	0/0:116:116,0:116:4135:0:0:0,-34.9195,-372.311	0/1:69:47,22:47:1692:22:788:-50.4737,0,-131.791	0/1:63:15,48:15:536:48:1728:-136.84,0,-29.6062	0/1:29:18,11:18:640:11:396:-27.2529,0,-49.1703	0/0:63:63,0:63:2256:0:0:0,-18.9649,-202.671	0/1:43:13,30:13:468:30:1062:-82.9462,0,-29.5107	0/1:50:18,32:18:644:32:1133:-87.2258,0,-43.2335	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5674	0/0:88:87,1:87:3104:1:36:0,-22.8924,-275.983	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.459	0/1:37:11,26:11:396:26:936:-73.4214,0,-24.8259	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.595	0/1:47:15,32:15:540:32:1144:-89.1211,0,-34.7799	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4573	0/0:62:59,3:59:2115:3:108:0,-8.58869,-180.409	0/1:80:72,8:72:2576:8:288:-2.18501,0,-207.933	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1171	0/1:115:73,42:73:2595:42:1482:-99.0529,0,-198.946	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.893	0/1:37:31,6:31:1108:6:216:-8.6524,0,-88.8929	0/1:64:23,41:23:824:41:1476:-113.87,0,-55.1975	0/1:20:6,14:6:216:14:496:-38.9537,0,-13.7699	.:.:.:.:.:.:.:.	0/1:63:26,37:26:928:37:1320:-100.137,0,-64.8424	0/1:64:17,47:17:599:47:1684:-132.581,0,-34.9676	0/0:222:207,15:207:7419:15:536:0,-18.2538,-618.834	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:69:51,18:51:1802:18:644:-37.5195,0,-141.645	0/0:31:28,3:28:1004:3:93:0,-0.6552,-81.8646	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:25:9,16:9:324:16:576:-44.6492,0,-21.9801	0/1:94:30,64:30:1080:64:2296:-178.604,0,-69.2083	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.8951	0/1:32:17,15:17:608:15:540:-39.2859,0,-45.4191	0/1:39:30,9:30:1080:9:324:-17.7657,0,-84.5636	0/1:34:20,14:20:720:14:504:-35.4631,0,-54.8938	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.5882	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.826	0/1:76:48,28:48:1716:28:995:-66.9857,0,-131.836	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.769	0/0:124:124,0:124:4403:0:0:0,-37.3277,-396.158	0/1:154:115,39:115:4096:39:1400:-79.9406,0,-322.452	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.026	0/1:78:52,26:52:1852:26:936:-61.0791,0,-142.272	0/0:77:77,0:77:2755:0:0:0,-23.1793,-248.072	0/0:337:337,0:337:12052:0:0:0,-101.447,-1083.8	0/1:321:282,39:282:10107:39:1396:-29.3085,0,-812.094	0/1:61:29,32:29:1032:32:1148:-85.267,0,-74.8306	0/0:181:181,0:181:6456:0:0:0,-54.4864,-581.031	0/0:192:190,2:190:6815:2:72:0,-50.961,-606.43
chr11	4114047	.	C	T	177222	PASS	AB=0.5593;ABP=99.0722;AC=142;AF=0.763441;AN=186;AO=6417;CIGAR=1X;DP=7832;DPB=7832;DPRA=0;EPP=1182.55;EPPR=3041;GTI=6;LEN=1;MEANALT=1;MQM=59.383;MQMR=59.9837;NS=93;NUMALT=1;ODDS=2.63998;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229080;QR=50686;RO=1415;RPL=234;RPP=11979;RPPR=3075.64;RPR=6183;RUN=1;SAF=4376;SAP=1848.01;SAR=2041;SRF=1411;SRP=3041;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:50:34,16:34:1216:16:576:-37.1097,0,-94.6951	0/1:29:13,16:13:468:16:548:-40.8761,0,-33.7298	0/1:62:34,28:34:1224:28:992:-70.9296,0,-91.795	0/1:100:65,35:65:2328:35:1260:-83.6025,0,-179.677	1/1:21:0,21:0:0:21:742:-67.0807,-6.32163,0	1/1:12:0,12:0:0:12:432:-39.2035,-3.61236,0	1/1:52:2,50:2:68:50:1784:-154.29,-9.19585,0	1/1:48:0,48:0:0:48:1716:-154.681,-14.4494,0	0/1:56:37,19:37:1328:19:668:-43.5632,0,-102.965	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	1/1:337:0,337:0:0:337:12061:-1084.99,-101.447,0	0/1:111:46,65:46:1648:65:2310:-174.715,0,-115.194	0/1:66:25,41:25:900:41:1452:-111.08,0,-61.453	1/1:116:0,116:0:0:116:4100:-369.101,-34.9195,0	1/1:95:0,95:0:0:95:3390:-305.298,-28.5979,0	1/1:85:0,85:0:0:85:3036:-273.43,-25.5876,0	0/1:67:8,59:8:288:59:2102:-169.264,0,-6.0984	1/1:72:0,72:0:0:72:2553:-229.959,-21.6742,0	0/1:80:8,72:8:288:72:2588:-209.026,0,-2.18501	0/1:77:42,35:42:1508:35:1237:-88.453,0,-112.835	1/1:52:0,52:0:0:52:1852:-166.957,-15.6536,0	0/1:45:40,5:40:1440:5:180:-3.00572,0,-116.351	0/1:71:44,27:44:1580:27:968:-66.0642,0,-121.118	0/1:35:19,16:19:684:16:576:-41.6307,0,-51.3543	1/1:27:0,27:0:0:27:964:-86.0812,-8.12781,0	0/1:117:87,30:87:3111:30:1076:-61.9262,0,-244.993	1/1:51:0,51:0:0:51:1820:-164.037,-15.3525,0	1/1:58:0,58:0:0:58:2067:-186.297,-17.4597,0	1/1:22:0,22:0:0:22:780:-70.5183,-6.62266,0	0/1:45:32,13:32:1148:13:468:-28.9133,0,-90.0835	1/1:47:0,47:0:0:47:1675:-150.997,-14.1484,0	1/1:60:1,59:1:32:59:2103:-186.315,-14.8625,0	1/1:153:0,153:0:0:153:5453:-490.796,-46.0576,0	1/1:171:0,171:0:0:171:6124:-550.06,-51.4761,0	1/1:398:2,396:2:72:396:14153:-1263.53,-112.973,0	1/1:216:0,216:0:0:216:7738:-696.038,-65.0225,0	0/1:238:90,148:90:3220:148:5276:-403.196,0,-218.377	0/1:42:36,6:36:1296:6:212:-6.78154,0,-104.301	1/1:303:0,303:0:0:303:10832:-973.705,-91.2121,0	1/1:93:2,91:2:72:91:3261:-286.736,-21.1591,0	0/1:52:23,29:23:828:29:1028:-77.1445,0,-59.1906	1/1:162:0,162:0:0:162:5790:-521.113,-48.7669,0	1/1:49:0,49:0:0:49:1734:-156.3,-14.7505,0	1/1:116:0,116:0:0:116:4144:-373.111,-34.9195,0	0/1:71:22,49:22:792:49:1733:-134.878,0,-50.2325	0/1:63:48,15:48:1716:15:527:-28.791,0,-135.761	0/1:31:12,19:12:432:19:672:-51.4164,0,-29.8893	1/1:65:0,65:0:0:65:2310:-207.886,-19.567,0	0/1:44:30,14:30:1072:14:504:-32.4481,0,-83.5471	0/1:50:32,18:32:1144:18:644:-43.2321,0,-88.2157	1/1:31:0,31:0:0:31:1091:-98.4864,-9.33193,0	1/1:89:1,88:1:36:88:3152:-280.298,-23.1934,0	1/1:32:0,32:0:0:32:1152:-103.982,-9.63296,0	0/1:37:26,11:26:932:11:388:-24.1006,0,-73.0608	1/1:43:0,43:0:0:43:1544:-139.211,-12.9443,0	0/1:47:31,16:31:1104:16:572:-37.6568,0,-85.5204	1/1:13:0,13:0:0:13:468:-42.4573,-3.91339,0	1/1:63:3,60:3:108:60:2156:-183.94,-8.88972,0	0/1:80:8,72:8:288:72:2584:-207.56,0,-2.18501	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:114:43,71:43:1544:71:2540:-194.293,0,-104.936	1/1:50:0,50:0:0:50:1788:-161.187,-15.0515,0	0/1:36:6,30:6:216:30:1080:-86.6762,0,-8.95343	0/1:65:42,23:42:1499:23:828:-55.2573,0,-115.637	0/1:20:14,6:14:496:6:212:-13.4042,0,-38.9537	.:.:.:.:.:.:.:.	0/1:64:38,26:38:1360:26:928:-64.5386,0,-103.435	0/1:64:47,17:47:1688:17:604:-35.4201,0,-132.941	1/1:221:15,206:15:540:206:7365:-613.611,-17.5911,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:72:18,54:18:640:54:1928:-152.009,0,-36.2552	0/1:30:3,27:3:108:27:968:-78.2719,0,-1.04427	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:27:16,11:16:572:11:386:-26.8595,0,-43.6856	0/1:96:65,31:65:2315:31:1100:-70.4009,0,-179.711	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:27:0,27:0:0:27:964:-87.0404,-8.12781,0	0/1:33:14,19:14:504:19:676:-51.2163,0,-35.7641	0/1:39:9,30:9:324:30:1076:-84.2032,0,-17.7657	0/1:34:14,20:14:504:20:716:-54.5327,0,-35.4631	1/1:26:0,26:0:0:26:932:-84.1812,-7.82678,0	1/1:67:0,67:0:0:67:2403:-216.511,-20.169,0	0/1:74:27,47:27:972:47:1681:-129.289,0,-65.5217	1/1:84:0,84:0:0:84:3012:-271.284,-25.2865,0	1/1:125:0,125:0:0:125:4440:-399.49,-37.6288,0	0/1:150:38,112:38:1355:112:3979:-313.134,0,-77.0952	1/1:39:0,39:0:0:39:1400:-126.172,-11.7402,0	0/1:83:28,55:28:991:55:1932:-148.297,0,-64.518	1/1:78:1,77:1:36:77:2714:-240.801,-19.8821,0	1/1:336:0,336:0:0:336:12040:-1082.92,-101.146,0	0/1:319:40,279:40:1427:279:9985:-801.858,0,-32.6982	0/1:59:32,27:32:1152:27:972:-70.0371,0,-86.2294	1/1:176:0,176:0:0:176:6259:-563.386,-52.9813,0	1/1:189:2,187:2:72:187:6677:-594.03,-50.0579,0
chr11	4114053	.	G	A	175791	PASS	AB=0.553985;ABP=81.7862;AC=142;AF=0.763441;AN=186;AO=6363;CIGAR=1X;DP=7778;DPB=7778;DPRA=0;EPP=1184.92;EPPR=3038.83;GTI=6;LEN=1;MEANALT=1.01075;MQM=59.3462;MQMR=59.9866;NS=93;NUMALT=1;ODDS=2.24419;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226975;QR=50668;RO=1414;RPL=233;RPP=11870.4;RPPR=3056.13;RPR=6130;RUN=1;SAF=4345;SAP=1850.94;SAR=2018;SRF=1412;SRP=3056.13;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:34,15:34:1209:15:532:-33.4626,0,-94.3637	0/1:27:13,14:13:468:14:500:-37.173,0,-34.3318	0/1:62:35,27:35:1260:27:968:-68.7726,0,-95.0335	0/1:98:65,33:65:2336:33:1184:-77.3674,0,-180.998	1/1:23:0,23:0:0:23:809:-73.0989,-6.92369,0	1/1:12:0,12:0:0:12:423:-38.3873,-3.61236,0	1/1:52:0,52:0:0:52:1842:-166.008,-15.6536,0	1/1:47:0,47:0:0:47:1664:-150.001,-14.1484,0	0/1:57:38,19:38:1368:19:684:-44.6963,0,-106.262	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:338:0,338:0:0:338:12083:-1086.95,-101.748,0	0/1:109:48,61:48:1728:61:2160:-161.827,0,-122.993	0/1:67:26,41:26:932:41:1455:-111.04,0,-64.0299	1/1:114:1,113:1:36:113:3987:-355.332,-30.7191,0	1/1:96:0,96:0:0:96:3418:-307.82,-28.8989,0	1/1:81:0,81:0:0:81:2893:-260.579,-24.3834,0	0/1:65:8,57:8:288:57:2038:-164.109,0,-6.70046	1/1:70:0,70:0:0:70:2508:-225.911,-21.0721,0	0/1:77:8,69:8:288:69:2446:-197.167,0,-3.0881	0/1:76:42,34:42:1504:34:1212:-86.508,0,-112.776	1/1:53:0,53:0:0:53:1896:-170.91,-15.9546,0	0/1:45:40,5:40:1436:5:180:-3.00572,0,-115.991	0/1:70:43,27:43:1548:27:949:-64.6507,0,-118.541	0/1:34:19,15:19:669:15:536:-38.3316,0,-50.2989	1/1:26:0,26:0:0:26:922:-82.3508,-7.82678,0	0/1:115:86,29:86:3069:29:1040:-59.2897,0,-241.816	1/1:52:0,52:0:0:52:1832:-165.112,-15.6536,0	1/1:54:0,54:0:0:54:1929:-173.877,-16.2556,0	1/1:21:0,21:0:0:21:743:-67.1886,-6.32163,0	0/1:44:31,13:31:1116:13:464:-28.8522,0,-87.5064	1/1:46:0,46:0:0:46:1632:-147.129,-13.8474,0	1/1:61:1,60:1:27:60:2148:-190.854,-15.663,0	1/1:155:0,155:0:0:155:5466:-491.658,-46.6597,0	1/1:172:0,172:0:0:172:6138:-551.337,-51.7772,0	1/1:400:0,399:0:0:399:14238:-1276.79,-120.111,0	1/1:216:0,216:0:0:216:7730:-695.528,-65.0225,0	0/1:239:92,147:92:3308:147:5233:-399.058,0,-225.991	0/1:42:35,7:35:1256:7:252:-10.3857,0,-100.702	1/1:306:1,305:1:21:305:10895:-977.416,-90.0152,0	1/1:97:2,95:2:72:95:3362:-295.829,-22.3632,0	0/1:53:24,29:24:864:29:1016:-75.7719,0,-62.128	1/1:161:0,161:0:0:161:5774:-519.681,-48.4658,0	1/1:48:0,48:0:0:48:1724:-155.397,-14.4494,0	1/1:110:0,110:0:0:110:3951:-355.763,-33.1133,0	0/1:70:22,48:22:792:48:1718:-133.83,0,-50.5336	0/1:63:48,15:48:1724:15:520:-28.1603,0,-136.481	0/1:30:12,18:12:432:18:622:-47.173,0,-30.1903	1/1:63:0,63:0:0:63:2235:-201.137,-18.9649,0	0/1:44:30,14:30:1076:14:504:-32.4481,0,-83.9075	0/1:50:31,19:31:1101:19:684:-46.8319,0,-84.3469	1/1:32:0,32:0:0:32:1140:-102.897,-9.63296,0	1/1:89:2,87:2:72:87:3124:-274.541,-19.9549,0	1/1:33:0,33:0:0:33:1184:-106.86,-9.93399,0	0/1:36:25,11:25:900:11:381:-23.7649,0,-70.4839	1/1:41:0,41:0:0:41:1464:-132.003,-12.3422,0	0/1:49:33,16:33:1180:16:572:-37.0548,0,-91.753	1/1:13:0,13:0:0:13:468:-42.4573,-3.91339,0	1/1:62:3,59:3:108:59:2122:-180.917,-8.58869,0	0/1:79:8,71:8:288:71:2533:-203.272,0,-2.48604	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:115:43,72:43:1533:72:2575:-197.251,0,-103.643	1/1:51:0,51:0:0:51:1813:-163.433,-15.3525,0	0/1:36:6,30:6:216:30:1072:-85.9554,0,-8.95343	0/1:62:41,21:41:1472:21:752:-49.3332,0,-114.112	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	.:.:.:.:.:.:.:.	0/1:64:39,25:39:1400:25:887:-60.8512,0,-107.033	0/1:62:45,17:45:1605:17:597:-35.3876,0,-126.074	1/1:218:14,204:14:500:204:7281:-609.863,-20.2884,0	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	0/1:71:18,53:18:648:53:1892:-148.951,0,-37.2788	0/1:31:3,28:3:108:28:1000:-80.8489,0,-0.74324	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:27:16,11:16:576:11:392:-27.3971,0,-44.0472	0/1:94:65,29:65:2317:29:1040:-65.6075,0,-180.492	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:28:0,28:0:0:28:995:-89.7714,-8.42884,0	0/1:32:14,18:14:504:18:640:-48.2787,0,-36.0651	0/1:38:9,29:9:324:29:1025:-80.9133,0,-18.0667	0/1:33:14,19:14:504:19:684:-51.9563,0,-35.7641	1/1:25:0,25:0:0:25:896:-80.9427,-7.52575,0	1/1:68:0,68:0:0:68:2432:-218.991,-20.47,0	0/1:74:27,47:27:968:47:1665:-127.849,0,-65.1611	1/1:84:0,84:0:0:84:3004:-270.567,-25.2865,0	1/1:122:0,122:0:0:122:4359:-392.208,-36.7257,0	0/1:151:39,112:39:1396:112:3995:-314.27,0,-80.4836	1/1:37:0,37:0:0:37:1323:-119.269,-11.1381,0	0/1:80:28,52:28:1008:52:1852:-141.68,0,-66.954	1/1:70:0,70:0:0:70:2491:-224.339,-21.0721,0	1/1:335:0,335:0:0:335:12005:-1079.57,-100.845,0	0/1:314:40,274:40:1425:274:9805:-787.032,0,-34.0221	0/1:59:32,27:32:1148:27:953:-68.3225,0,-85.8691	1/1:176:0,176:0:0:176:6287:-565.833,-52.9813,0	1/1:189:2,187:2:72:187:6671:-593.6,-50.0579,0
chr11	4114198	.	G	A	124727	PASS	AB=0.515816;ABP=16.6794;AC=59;AF=0.31383;AN=188;AO=6350;CIGAR=1X;DP=13789;DPB=13789;DPRA=1.83447;EPP=13601.4;EPPR=15120.3;GTI=10;LEN=1;MEANALT=1.05172;MQM=59.9609;MQMR=59.6887;NS=94;NUMALT=1;ODDS=0.378039;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=226142;QR=263990;RO=7434;RPL=22;RPP=13601.4;RPPR=15120.3;RPR=6328;RUN=1;SAF=0;SAP=13791.9;SAR=6350;SRF=0;SRP=16145.7;SRR=7434;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:8,23:8:288:23:802:-63.1175,0,-16.9355	0/1:152:80,72:80:2818:72:2568:-185.614,0,-208.084	0/1:100:51,49:51:1832:49:1735:-126.33,0,-135.051	0/1:129:66,63:66:2352:63:2253:-164.199,0,-173.092	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.25	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.264	0/0:142:142,0:142:5045:0:0:0,-42.7463,-454.099	0/0:345:345,0:345:12176:0:0:0,-103.855,-1095.58	0/1:121:72,49:72:2545:49:1747:-121.087,0,-192.836	0/0:215:214,1:214:7559:1:36:0,-61.1232,-676.679	0/0:59:58,1:58:2050:1:36:0,-14.1625,-181.163	0/1:78:44,34:44:1567:34:1208:-85.5457,0,-117.832	0/1:82:49,33:49:1752:33:1172:-81.103,0,-133.247	0/0:87:87,0:87:3089:0:0:0,-26.1896,-278.219	0/0:99:99,0:99:3496:0:0:0,-29.802,-314.836	0/0:77:76,1:76:2712:1:27:0,-20.4802,-241.619	0/1:84:61,23:61:2171:23:820:-48.836,0,-170.345	0/0:94:94,0:94:3363:0:0:0,-28.2968,-301.534	0/1:125:23,102:23:824:102:3636:-289.818,0,-36.8464	0/1:140:46,94:46:1613:94:3371:-261.461,0,-103.308	0/0:251:251,0:251:8870:0:0:0,-75.5585,-798.206	0/1:113:27,86:27:964:86:3061:-241.701,0,-53.0572	0/1:98:34,64:34:1216:64:2272:-175.239,0,-80.2433	0/1:95:33,62:33:1175:62:2224:-171.826,0,-77.4475	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.696	0/1:441:236,205:236:8428:205:7319:-525.998,0,-625.701	0/0:101:101,0:101:3584:0:0:0,-30.404,-322.693	0/0:77:77,0:77:2723:0:0:0,-23.1793,-245.298	0/0:197:195,1:195:6941:1:36:0,-55.7633,-620.571	0/1:158:82,76:82:2923:76:2716:-197.121,0,-215.713	0/0:178:178,0:178:6340:0:0:0,-53.5833,-570.643	1/1:544:6,538:6:212:538:19139:-1702.63,-144.336,0	0/1:10:9,1:9:320:1:36:-0.587975,0,-26.1228	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8904	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:266:173,93:173:6130:93:3314:-218.404,0,-471.718	0/1:259:134,125:134:4744:125:4448:-322.524,0,-349.135	0/0:72:72,0:72:2545:0:0:0,-21.6742,-229.258	1/1:286:1,285:1:36:285:10117:-906.866,-82.4963,0	0/1:205:81,124:81:2895:124:4439:-337.969,0,-199.053	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.057	0/0:122:122,0:122:4363:0:0:0,-36.7257,-392.807	0/0:275:275,0:275:9775:0:0:0,-82.7832,-879.67	0/1:113:74,39:74:2639:39:1378:-90.3004,0,-203.738	0/1:160:48,112:48:1707:112:4024:-314.182,0,-105.747	0/1:95:60,35:60:2140:35:1252:-84.3653,0,-164.27	0/0:191:190,1:190:6758:1:36:0,-53.8985,-604.652	0/1:101:38,63:38:1368:63:2256:-172.899,0,-93.0168	0/1:98:57,41:57:2021:41:1463:-102.464,0,-152.644	0/0:50:50,0:50:1762:0:0:0,-15.0515,-158.801	1/1:425:6,418:6:216:418:14901:-1321.05,-108.095,0	0/0:52:52,0:52:1844:0:0:0,-15.6536,-166.224	0/1:102:51,51:51:1800:51:1804:-131.934,0,-131.572	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6168	0/1:122:56,66:56:2004:66:2343:-174.404,0,-143.902	0/0:34:33,1:33:1166:1:36:0,-6.63674,-101.647	1/1:320:2,318:2:72:318:11324:-1012.21,-89.4929,0	1/1:465:9,456:9:311:456:16286:-1437.09,-111.655,0	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.196	0/1:137:90,47:90:3205:47:1684:-110.606,0,-247.419	1/1:291:2,289:2:72:289:10334:-923.142,-80.763,0	0/1:179:145,34:145:5132:34:1208:-55.1417,0,-408.132	0/1:218:98,120:98:3461:120:4308:-322.268,0,-246.061	0/1:75:48,27:48:1702:27:959:-64.0481,0,-130.878	0/0:63:63,0:63:2213:0:0:0,-18.9649,-199.423	0/1:349:191,158:191:6802:158:5595:-398.616,0,-507.073	0/1:83:18,65:18:648:65:2323:-184.258,0,-33.664	0/1:109:18,91:18:644:91:3195:-254.963,0,-25.4737	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/1:125:85,40:85:3013:40:1408:-89.3871,0,-233.767	1/1:380:10,370:10:351:370:13205:-1156.33,-82.4647,0	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.333	0/1:89:64,25:64:2279:25:900:-54.5293,0,-178.572	0/1:214:114,100:114:4088:100:3563:-256.458,0,-303.669	0/0:89:89,0:89:3178:0:0:0,-26.7917,-286.238	0/0:84:84,0:84:2990:0:0:0,-25.2865,-269.29	0/1:111:54,54:54:1931:54:1932:-141.286,0,-140.268	1/1:432:8,424:8:284:424:15101:-1332.8,-104.142,0	0/1:94:52,42:52:1836:42:1500:-106.997,0,-137.213	0/0:107:107,0:107:3797:0:0:0,-32.2102,-341.884	0/0:96:95,1:95:3378:1:32:0,-25.6996,-300.95	0/1:119:67,52:67:2350:52:1845:-130.487,0,-175.925	0/0:79:79,0:79:2804:0:0:0,-23.7814,-252.596	0/0:192:192,0:192:6800:0:0:0,-57.7978,-612.039	0/1:173:110,63:110:3919:63:2239:-149.695,0,-300.785	0/0:66:66,0:66:2334:0:0:0,-19.868,-210.294	0/1:116:63,53:63:2246:53:1875:-134.109,0,-167.101	0/0:96:96,0:96:3411:0:0:0,-28.8989,-307.148	0/0:35:35,0:35:1217:0:0:0,-10.536,-109.829	0/1:432:59,373:59:2088:373:13197:-1057.5,0,-58.1336	0/1:190:74,116:74:2598:116:4104:-312.352,0,-176.869	0/0:132:132,0:132:4681:0:0:0,-39.736,-421.437	0/0:144:144,0:144:5098:0:0:0,-43.3483,-458.956
chr11	4114225	.	TA	AA	146576	PASS	AB=0.466771;ABP=64.1982;AC=129;AF=0.68617;AN=188;AO=7343;CIGAR=1X1M;DP=13975;DPB=13975;DPRA=0;EPP=15948.1;EPPR=14360.8;GTI=12;LEN=1;MEANALT=1.11702;MQM=59.6634;MQMR=59.9537;NS=94;NUMALT=1;ODDS=1.59551;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=262179;QR=233801;RO=6616;RPL=7343;RPP=15948.1;RPPR=14360.8;RPR=0;RUN=1;SAF=0;SAP=15948.1;SAR=7343;SRF=0;SRP=14369.5;SRR=6616;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:23,8:23:809:8:288:-16.9355,0,-63.4262	0/1:157:76,80:76:2692:80:2817:-206.552,0,-195.311	0/1:96:49,47:49:1758:47:1688:-123.297,0,-129.605	0/1:131:69,62:69:2430:62:2220:-160.618,0,-179.517	1/1:59:0,59:0:0:59:2120:-191.041,-17.7608,0	1/1:57:0,57:0:0:57:2030:-182.548,-17.1587,0	1/1:147:0,147:0:0:147:5282:-475.316,-44.2514,0	1/1:342:0,342:0:0:342:12210:-1098.62,-102.952,0	0/1:120:50,70:50:1762:70:2497:-188.825,0,-122.736	1/1:211:1,210:1:36:210:7461:-667.418,-59.9191,0	1/1:62:1,61:1:36:61:2165:-191.508,-15.0656,0	0/1:78:34,44:34:1207:44:1568:-117.923,0,-85.4541	0/1:84:33,51:33:1177:51:1814:-138.228,0,-80.9502	1/1:90:0,90:0:0:90:3189:-287.22,-27.0927,0	1/1:103:0,103:0:0:103:3683:-331.654,-31.0061,0	1/1:74:0,73:0:0:73:2620:-235.787,-21.9752,0	0/1:81:24,57:24:835:57:2030:-158.57,0,-51.0812	1/1:92:1,91:1:36:91:3244:-288.109,-24.0965,0	0/1:130:107,23:107:3753:23:824:-35.3412,0,-298.836	0/1:144:101,43:101:3549:43:1521:-93.8281,0,-276.27	1/1:263:0,262:0:0:262:9333:-839.339,-78.8699,0	0/1:114:92,22:92:3254:22:769:-35.2079,0,-258.764	0/1:108:74,34:74:2591:34:1224:-77.9535,0,-200.926	0/1:95:64,31:64:2262:31:1089:-69.7079,0,-175.243	1/1:34:0,34:0:0:34:1215:-109.651,-10.235,0	0/1:447:211,236:211:7451:236:8396:-621.056,0,-536.076	1/1:98:0,98:0:0:98:3486:-313.878,-29.5009,0	1/1:73:0,73:0:0:73:2607:-234.859,-21.9752,0	1/1:195:0,195:0:0:195:6966:-626.632,-58.7009,0	0/1:155:77,78:77:2745:78:2777:-203.481,0,-200.632	1/1:177:0,177:0:0:177:6340:-570.641,-53.2823,0	0/0:564:558,6:558:19491:6:212:0,-150.356,-1734.33	0/1:11:1,10:1:36:10:356:-29.0634,0,-0.286945	1/1:8:0,8:0:0:8:288:-26.2545,-2.40824,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:266:96,170:96:3429:170:6116:-470.443,0,-228.75	0/1:265:128,135:128:4480:135:4829:-355.219,0,-323.842	1/1:73:0,73:0:0:73:2607:-234.835,-21.9752,0	0/0:302:301,1:301:10613:1:36:0,-87.3128,-951.492	0/1:210:130,80:130:4540:80:2868:-195.109,0,-345.553	1/1:64:0,64:0:0:64:2281:-205.518,-19.2659,0	1/1:117:0,117:0:0:117:4192:-377.418,-35.2205,0	1/1:274:0,274:0:0:274:9801:-881.999,-82.4822,0	0/1:117:41,76:41:1457:76:2736:-211.259,0,-96.2046	0/1:167:117,50:117:4112:50:1781:-110.295,0,-319.995	0/1:95:37,58:37:1307:58:2078:-158.403,0,-89.3156	1/1:194:1,192:1:36:192:6868:-614.565,-54.8602,0	0/1:102:61,41:61:2139:41:1461:-101.079,0,-162.07	0/1:97:42,50:42:1486:50:1755:-130.039,0,-105.98	1/1:42:0,42:0:0:42:1508:-135.958,-12.6433,0	0/0:444:438,6:438:15460:6:216:0,-113.867,-1371.29	1/1:50:0,50:0:0:50:1768:-159.389,-15.0515,0	0/1:102:54,48:54:1887:48:1709:-123.388,0,-139.399	1/1:11:0,11:0:0:11:366:-33.2583,-3.31133,0	0/1:125:68,57:68:2403:57:2044:-146.597,0,-178.897	1/1:34:1,33:1:36:33:1184:-103.27,-6.63675,0	0/0:332:330,1:330:11754:1:36:0,-96.4025,-1054.1	0/0:478:467,10:467:16551:10:345:0,-112.576,-1457.89	1/1:62:0,62:0:0:62:2223:-200.317,-18.6639,0	0/1:134:49,85:49:1752:85:3021:-231.775,0,-117.626	0/0:296:294,2:294:10412:2:72:0,-82.2682,-930.165	0/1:184:37,147:37:1306:147:5249:-417.154,0,-62.4499	0/1:223:124,99:124:4382:99:3517:-249.573,0,-327.426	0/1:79:30,49:30:1076:49:1733:-132.46,0,-73.3717	1/1:61:0,61:0:0:61:2188:-197.175,-18.3628,0	0/1:347:164,183:164:5766:183:6517:-482.123,0,-414.602	0/1:89:72,17:72:2505:17:593:-26.9007,0,-198.852	0/1:110:93,17:93:3312:17:608:-21.9341,0,-265.185	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:127:44,82:44:1567:82:2935:-226.089,0,-103.031	0/0:397:387,10:387:13707:10:356:0,-87.1277,-1201.04	1/1:85:0,85:0:0:85:3044:-273.87,-25.5876,0	0/1:89:25,64:25:882:64:2295:-180.011,0,-52.9053	0/1:209:104,105:104:3672:105:3748:-274.585,0,-267.768	1/1:92:0,92:0:0:92:3300:-297.127,-27.6948,0	1/1:82:0,82:0:0:82:2928:-263.718,-24.6845,0	0/1:113:58,55:58:2052:55:1961:-142.642,0,-150.876	0/0:450:442,8:442:15677:8:288:0,-109.196,-1383.63	0/1:92:42,50:42:1508:50:1790:-133.682,0,-108.318	1/1:111:0,111:0:0:111:3976:-357.954,-33.4143,0	1/1:94:1,92:1:34:92:3302:-294.028,-24.8893,0	0/1:118:54,64:54:1907:64:2278:-169.751,0,-136.368	1/1:79:0,79:0:0:79:2840:-255.835,-23.7814,0	1/1:194:0,194:0:0:194:6955:-625.976,-58.3998,0	0/1:169:66,103:66:2324:103:3696:-281.938,0,-158.543	1/1:64:0,64:0:0:64:2281:-205.526,-19.2659,0	0/1:118:55,63:55:1959:63:2252:-167.038,0,-141.063	1/1:91:0,91:0:0:91:3264:-293.947,-27.3937,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:453:395,58:395:14058:58:2072:-50.375,0,-1128.63	0/1:198:121,76:121:4307:76:2724:-185.732,0,-328.146	1/1:132:1,131:1:36:131:4627:-412.974,-36.1377,0	1/1:141:0,141:0:0:141:5048:-454.458,-42.4452,0
chr11	4114237	.	C	T	149051	PASS	AB=0.473363;ABP=42.3431;AC=129;AF=0.68617;AN=188;AO=7424;CIGAR=1X;DP=13985;DPB=13985;DPRA=0;EPP=16124;EPPR=14237;GTI=12;LEN=1;MEANALT=1.05319;MQM=59.6339;MQMR=59.9613;NS=94;NUMALT=1;ODDS=0.975068;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=265723;QR=234690;RO=6555;RPL=7424;RPP=16124;RPPR=14237;RPR=0;RUN=1;SAF=0;SAP=16124;SAR=7424;SRF=0;SRP=14237;SRR=6555;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:23,8:23:820:8:288:-16.9355,0,-64.4183	0/1:156:75,81:75:2692:81:2904:-214.601,0,-195.564	0/1:96:49,47:49:1764:47:1692:-123.657,0,-130.145	0/1:134:68,66:68:2428:66:2372:-173.385,0,-178.436	1/1:59:0,59:0:0:59:2116:-190.681,-17.7608,0	1/1:58:0,58:0:0:58:2084:-187.396,-17.4597,0	1/1:148:0,148:0:0:148:5316:-478.373,-44.5524,0	1/1:344:0,344:0:0:344:12317:-1108.23,-103.554,0	0/1:120:48,71:48:1716:71:2552:-193.704,0,-118.541	1/1:223:1,222:1:36:222:7968:-712.481,-63.5314,0	1/1:58:1,57:1:36:57:2052:-181.344,-13.8615,0	0/1:78:33,45:33:1180:45:1616:-122.242,0,-83.0277	0/1:82:33,49:33:1188:49:1756:-133.607,0,-82.5441	1/1:90:0,90:0:0:90:3240:-291.793,-27.0927,0	1/1:103:0,103:0:0:103:3685:-331.829,-31.0061,0	1/1:76:0,76:0:0:76:2712:-244.31,-22.8783,0	0/1:82:23,59:23:828:59:2093:-163.929,0,-50.1597	1/1:88:0,88:0:0:88:3148:-282.683,-26.4906,0	0/1:128:107,21:107:3844:21:741:-28.4716,0,-307.623	0/1:143:101,42:101:3597:42:1508:-92.9626,0,-280.889	1/1:265:0,265:0:0:265:9359:-841.621,-79.773,0	0/1:112:91,21:91:3272:21:756:-34.6486,0,-260.984	0/1:107:72,34:72:2557:34:1224:-78.1957,0,-198.11	0/1:96:63,33:63:2256:33:1188:-78.3182,0,-174.404	1/1:34:0,34:0:0:34:1224:-110.462,-10.235,0	0/1:447:211,236:211:7561:236:8464:-627.163,0,-545.959	1/1:99:0,99:0:0:99:3544:-319.094,-29.802,0	1/1:75:0,75:0:0:75:2681:-241.515,-22.5773,0	1/1:196:0,196:0:0:196:7028:-631.992,-59.0019,0	0/1:157:77,80:77:2772:80:2849:-209.353,0,-202.459	1/1:183:0,183:0:0:183:6561:-590.435,-55.0885,0	0/0:560:554,6:554:19862:6:216:0,-148.786,-1767.3	0/1:11:1,10:1:36:10:360:-29.4237,0,-0.286945	1/1:8:0,8:0:0:8:284:-25.8904,-2.40824,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:269:96,173:96:3448:173:6212:-478.119,0,-229.555	0/1:260:124,136:124:4407:136:4873:-360.43,0,-318.532	1/1:70:0,70:0:0:70:2502:-225.39,-21.0721,0	0/0:296:294,1:294:10537:1:36:0,-85.5654,-944.642	0/1:209:130,79:130:4615:79:2836:-192.536,0,-352.597	1/1:64:0,64:0:0:64:2300:-207.223,-19.2659,0	1/1:120:0,120:0:0:120:4312:-388.068,-36.1236,0	1/1:278:0,278:0:0:278:9904:-891.264,-83.6863,0	0/1:117:41,76:41:1468:76:2716:-209.461,0,-97.1946	0/1:167:116,51:116:4160:51:1832:-114.885,0,-324.31	0/1:95:36,59:36:1288:59:2120:-161.516,0,-87.6038	1/1:196:2,194:2:72:194:6930:-616.877,-52.1652,0	0/1:104:62,42:62:2198:42:1485:-102.635,0,-166.775	0/1:99:42,57:42:1508:57:2044:-154.238,0,-106.213	1/1:44:0,44:0:0:44:1584:-142.738,-13.2453,0	0/0:441:435,6:435:15604:6:216:0,-112.964,-1384.26	1/1:50:0,50:0:0:50:1792:-161.537,-15.0515,0	0/1:99:53,46:53:1878:46:1648:-118.805,0,-139.493	1/1:10:0,10:0:0:10:345:-31.3806,-3.0103,0	0/1:124:66,58:66:2368:58:2084:-150.496,0,-176.05	1/1:34:1,33:1:36:33:1188:-103.63,-6.63675,0	0/0:332:330,1:330:11791:1:36:0,-96.4025,-1057.45	0/0:475:464,9:464:16577:9:320:0,-113.604,-1462.35	1/1:65:0,65:0:0:65:2321:-209.128,-19.567,0	0/1:135:49,86:49:1764:86:3091:-237.766,0,-118.405	0/0:293:291,2:291:10421:2:72:0,-81.3651,-930.968	0/1:187:38,149:38:1364:149:5336:-424.076,0,-66.1403	0/1:223:122,101:122:4384:101:3624:-259.197,0,-327.602	0/1:79:30,49:30:1076:49:1752:-134.169,0,-73.3715	1/1:63:0,63:0:0:63:2249:-202.661,-18.9649,0	0/1:350:162,188:162:5804:188:6658:-493.82,0,-417.11	0/1:88:71,17:71:2541:17:612:-28.9204,0,-202.362	0/1:110:93,17:93:3344:17:608:-21.9341,0,-268.063	1/1:58:0,58:0:0:58:2088:-188,-17.4597,0	0/1:125:44,81:44:1580:81:2912:-224.679,0,-104.863	0/0:392:381,11:381:13641:11:377:0,-83.7458,-1193.21	1/1:86:0,86:0:0:86:3088:-277.967,-25.8886,0	0/1:88:26,62:26:932:62:2232:-174.645,0,-57.7082	0/1:207:99,108:99:3533:108:3880:-287.062,0,-255.865	1/1:91:0,91:0:0:91:3253:-292.984,-27.3937,0	1/1:84:0,84:0:0:84:3012:-271.27,-25.2865,0	0/1:117:58,59:58:2065:59:2104:-153.577,0,-150.899	0/0:446:439,7:439:15720:7:252:0,-111.23,-1391.09	0/1:93:42,51:42:1504:51:1836:-137.517,0,-107.655	1/1:108:0,108:0:0:108:3835:-345.302,-32.5112,0	1/1:93:1,92:1:32:92:3300:-293.632,-24.7965,0	0/1:121:54,67:54:1921:67:2404:-180.182,0,-136.722	1/1:79:0,79:0:0:79:2832:-255.116,-23.7814,0	1/1:194:0,194:0:0:194:6919:-622.741,-58.3998,0	0/1:174:66,108:66:2360:108:3872:-296.237,0,-160.279	1/1:64:0,64:0:0:64:2280:-205.44,-19.2659,0	0/1:119:55,64:55:1976:64:2304:-171.415,0,-142.292	1/1:92:0,92:0:0:92:3304:-297.523,-27.6948,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:447:387,60:387:13880:60:2152:-59.3776,0,-1114.41	0/1:196:122,74:122:4376:74:2603:-175.507,0,-335.011	1/1:134:1,133:1:36:133:4772:-425.994,-36.7397,0	1/1:140:1,139:1:36:139:5000:-446.537,-38.5459,0
chr11	4134592	.	C	T	348.991	PASS	AB=0.623826;ABP=414.406;AC=48;AF=0.258065;AN=186;AO=1929;CIGAR=1X;DP=4991;DPB=4991;DPRA=1.50639;EPP=4191.78;EPPR=6626;GTI=35;LEN=1;MEANALT=1.06122;MQM=14.8336;MQMR=49.6778;NS=93;NUMALT=1;ODDS=0.336268;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68762;QR=107026;RO=3054;RPL=1929;RPP=4191.78;RPPR=6626;RPR=0;RUN=1;SAF=1929;SAP=4191.78;SAR=0;SRF=3054;SRP=6634.69;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:6,34:6:216:34:1224:-18.3416,0,-5.12442	0/1:62:23,39:23:798:39:1383:-22.0463,0,-51.951	0/1:23:4,19:4:135:19:684:-12.6851,0,-5.47151	0/1:79:24,55:24:852:55:1954:-62.6733,0,-52.2358	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.7278	0/0:28:28,0:28:981:0:0:0,-8.42884,-87.6957	0/0:60:59,0:59:2093:0:0:0,-17.7608,-185.815	0/0:42:42,0:42:1463:0:0:0,-12.6433,-128.991	0/1:81:16,65:16:563:65:2301:-40.3158,0,-26.1846	0/0:55:55,0:55:1963:0:0:0,-16.5566,-175.988	0/0:31:31,0:31:1081:0:0:0,-9.33193,-95.2982	0/1:69:40,29:40:1391:29:1018:-5.92752,0,-102.82	0/1:58:27,31:27:968:31:1116:-10.5128,0,-69.0963	0/0:38:38,0:38:1331:0:0:0,-11.4391,-117.964	0/0:51:51,0:51:1767:0:0:0,-15.3525,-156.475	0/0:44:44,0:44:1544:0:0:0,-13.2453,-138.668	0/1:40:18,22:18:633:22:784:-9.45602,0,-44.7665	0/0:54:54,0:54:1898:0:0:0,-16.2556,-169.5	0/1:48:17,31:17:595:31:1104:-13.5191,0,-38.835	0/1:97:45,52:45:1571:52:1859:-42.8331,0,-108.637	0/0:130:130,0:130:4548:0:0:0,-39.1339,-406.398	0/1:23:5,18:5:171:18:648:-24.2299,0,-4.62992	0/1:85:35,50:35:1224:50:1789:-44.8674,0,-84.4984	0/1:119:61,58:61:2171:58:2077:-26.8449,0,-157.608	0/0:11:11,0:11:377:0:0:0,-3.31133,-31.4762	0/1:115:32,83:32:1100:83:2974:-80.4288,0,-58.4009	0/0:169:169,0:169:5923:0:0:0,-50.8741,-525.217	0/0:48:47,0:47:1663:0:0:0,-14.1484,-148.981	0/0:40:40,0:40:1411:0:0:0,-12.0412,-127.16	0/1:54:24,30:24:836:30:1069:-19.17,0,-52.4879	0/0:33:33,0:33:1171:0:0:0,-9.93399,-104.42	0/1:5:1,4:1:36:4:144:-4.77836,0,-2.0779	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0325	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.98075	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1972	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.56681	0/1:221:96,124:96:3382:124:4383:-119.446,0,-232.706	0/1:62:8,54:8:288:54:1928:-47.4168,0,-7.49148	0/0:48:48,0:48:1686:0:0:0,-14.4494,-148.408	.:.:.:.:.:.:.:.	0/1:72:39,33:39:1364:33:1184:-14.0355,0,-99.0046	0/0:23:23,0:23:782:0:0:0,-6.92369,-70.4306	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.0917	0/0:82:82,0:82:2843:0:0:0,-24.6845,-253.297	0/1:74:33,41:33:1147:41:1454:-34.6782,0,-81.0143	0/1:87:16,71:16:572:71:2544:-72.3301,0,-23.6612	0/1:31:9,22:9:301:22:774:-13.1017,0,-17.3624	0/0:35:35,0:35:1229:0:0:0,-10.536,-110.577	0/1:72:28,44:28:977:44:1580:-44.5348,0,-63.4694	0/1:98:14,84:14:489:84:2986:-89.1155,0,-14.5481	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.628	0/1:9:2,7:2:72:7:248:-9.94163,0,-4.11026	0/0:39:39,0:39:1384:0:0:0,-11.7402,-123.84	0/1:20:6,14:6:201:14:504:-12.9871,0,-12.3827	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.1084	0/1:42:6,36:6:216:36:1296:-45.4331,0,-7.04863	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.6872	0/1:2:1,1:1:36:1:36:-0.894612,0,-2.99251	0/1:12:3,9:3:99:9:320:-8.65581,0,-5.61686	0/0:24:24,0:24:824:0:0:0,-7.22472,-73.0535	0/1:92:42,50:42:1466:50:1796:-52.4842,0,-103.619	0/1:4:1,3:1:32:3:93:-2.66447,0,-1.99156	0/1:88:37,51:37:1300:51:1821:-44.1412,0,-90.6777	0/1:132:61,71:61:2139:71:2510:-62.2289,0,-148.124	0/1:31:16,14:16:540:14:492:-5.84106,0,-37.395	0/0:14:14,0:14:482:0:0:0,-4.21442,-42.8188	0/1:61:19,42:19:643:42:1495:-40.4818,0,-39.575	0/1:105:19,86:19:646:86:3037:-85.8051,0,-22.17	0/1:13:5,8:5:180:8:284:-7.89842,0,-12.5686	0/0:41:41,0:41:1428:0:0:0,-12.3422,-123.69	0/1:68:28,40:28:993:40:1429:-34.1581,0,-69.0868	0/1:4:1,3:1:36:3:108:-2.98656,0,-2.38511	0/0:38:36,2:36:1266:2:72:0,-9.541,-111.174	0/1:46:9,37:9:320:37:1328:-22.0989,0,-14.2387	0/1:80:27,53:27:952:53:1892:-35.2442,0,-59.6297	0/0:100:99,0:99:3497:0:0:0,-29.802,-312.918	0/0:25:25,0:25:866:0:0:0,-7.52575,-75.5204	0/1:65:24,41:24:856:41:1472:-18.2923,0,-56.8687	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.8276	0/1:73:42,31:42:1494:31:1108:-15.1137,0,-112.239	0/0:32:32,0:32:1107:0:0:0,-9.63296,-98.2749	0/0:64:64,0:64:2236:0:0:0,-19.2659,-199.869	0/1:89:39,50:39:1350:50:1765:-46.6577,0,-94.7356	0/0:40:40,0:40:1392:0:0:0,-12.0412,-125.246	0/0:77:77,0:77:2694:0:0:0,-23.1793,-241.97	0/1:135:73,62:73:2563:62:2221:-43.5196,0,-189.063	0/0:39:39,0:39:1362:0:0:0,-11.7402,-121.774	0/1:71:32,39:32:1135:39:1396:-20.9652,0,-80.1509	0/0:54:54,0:54:1888:0:0:0,-16.2556,-168.62	0/0:19:19,0:19:654:0:0:0,-5.71957,-56.7112	0/1:51:22,29:22:756:29:1036:-17.1801,0,-51.2501	0/1:79:22,57:22:769:57:2042:-56.9643,0,-44.3951	0/0:47:46,0:46:1603:0:0:0,-13.8474,-139.492	0/0:81:81,0:81:2809:0:0:0,-24.3834,-250.413
chr11	4134602	.	C	T	90063.9	PASS	AB=0.434267;ABP=126.336;AC=133;AF=0.715054;AN=186;AO=3679;CIGAR=1X;DP=5672;DPB=5672;DPRA=61.6413;EPP=7991.86;EPPR=4324.24;GTI=36;LEN=1;MEANALT=1.03261;MQM=48.446;MQMR=15.2658;NS=93;NUMALT=1;ODDS=0.353472;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130316;QR=69384;RO=1990;RPL=2977;RPP=3057.84;RPPR=4289.57;RPR=702;RUN=1;SAF=2977;SAP=3057.84;SAR=702;SRF=1986;SRP=4289.57;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:41,2:41:1443:2:72:0,-6.16735,-40.783	0/1:63:40,23:40:1392:23:790:-51.4645,0,-23.9341	0/1:22:18,4:18:632:4:144:-6.60365,0,-11.733	0/1:77:53,24:53:1877:24:856:-53.8724,0,-59.7449	1/1:12:0,12:0:0:12:428:-38.7365,-3.61236,0	1/1:26:0,26:0:0:26:927:-82.8453,-7.82678,0	1/1:59:1,58:1:32:58:2068:-184.171,-16.3673,0	1/1:42:3,39:3:108:39:1383:-115.139,-4.44618,0	0/1:81:64,17:64:2205:17:604:-29.8494,0,-39.7573	1/1:52:0,52:0:0:52:1834:-164.544,-15.6536,0	1/1:33:1,32:1:36:32:1124:-99.7535,-8.53661,0	0/1:65:29,36:29:985:36:1283:-94.853,0,-8.78774	0/1:59:31,28:31:1078:28:994:-71.266,0,-10.1929	1/1:40:2,38:2:63:38:1338:-114.874,-6.93005,0	1/1:49:2,47:2:57:47:1673:-146.083,-10.5836,0	1/1:46:0,46:0:0:46:1602:-143.746,-13.8474,0	0/1:39:22,17:22:780:17:600:-42.0971,0,-9.75222	1/1:52:0,52:0:0:52:1855:-165.756,-15.6536,0	0/1:48:31,17:31:1083:17:608:-39.9591,0,-13.509	0/1:98:55,43:55:1913:43:1496:-105.065,0,-48.6284	1/1:128:1,127:1:36:127:4512:-401.152,-35.5511,0	0/1:47:20,27:20:687:27:960:-66.4988,0,-19.0033	0/1:84:47,37:47:1656:37:1294:-91.1978,0,-38.9645	0/1:119:57,62:57:1988:62:2197:-159.926,0,-25.6612	0/1:11:2,9:2:72:9:320:-25.7222,0,-0.469453	0/1:234:89,145:89:3086:145:5155:-379.182,0,-53.6684	1/1:172:5,167:5:167:167:5953:-523.368,-41.539,0	1/1:48:1,47:1:36:47:1688:-148.507,-11.4687,0	1/1:269:1,268:1:36:268:9580:-827.668,-77.5535,0	0/1:53:31,22:31:1091:22:784:-54.5969,0,-20.6007	1/1:31:0,31:0:0:31:1053:-94.3358,-9.33193,0	0/1:4:3,1:3:104:1:36:-2.37893,0,-1.77783	1/1:4:0,4:0:0:4:131:-12.0642,-1.20412,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.98075	1/1:4:0,4:0:0:4:144:-13.1972,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.56681,-0.30103,0	0/1:300:128,172:128:4463:172:6113:-449.433,0,-103.317	0/1:58:49,9:49:1681:9:324:-11.9065,0,-40.077	1/1:48:0,48:0:0:48:1683:-148.253,-14.4494,0	.:.:.:.:.:.:.:.	0/1:72:34,38:34:1203:38:1364:-100.784,0,-15.2793	1/1:23:0,23:0:0:23:789:-71.0758,-6.92369,0	1/1:21:0,21:0:0:21:748:-67.3862,-6.32163,0	1/1:80:1,79:1:36:79:2745:-244.814,-22.4866,0	0/1:72:41,31:41:1425:31:1077:-75.3274,0,-35.4504	0/1:117:76,41:76:2677:41:1463:-93.3941,0,-69.9508	0/1:32:22,10:22:773:10:356:-22.4789,0,-14.5508	1/1:34:0,34:0:0:34:1216:-109.495,-10.235,0	0/1:71:47,24:47:1635:24:864:-56.4349,0,-49.7289	0/1:91:78,13:78:2727:13:464:-14.4189,0,-83.4644	1/1:110:1,109:1:36:109:3869:-341.292,-30.1325,0	0/1:8:7,1:7:248:1:36:-1.18099,0,-10.4616	1/1:39:0,38:0:0:38:1343:-119.878,-11.4391,0	0/1:37:14,23:14:485:23:820:-60.8287,0,-7.78235	1/1:10:0,10:0:0:10:352:-31.7665,-3.0103,0	0/1:42:35,7:35:1238:7:252:-10.2734,0,-45.9433	1/1:15:0,15:0:0:15:536:-48.4567,-4.51545,0	0/1:4:1,3:1:36:3:108:-8.64811,0,-0.292552	0/1:15:9,6:9:324:6:212:-14.637,0,-7.75726	1/1:26:1,24:1:36:24:845:-72.9505,-4.80011,0	0/1:92:51,41:51:1771:41:1443:-100.876,0,-55.0323	0/1:4:3,1:3:93:1:36:-2.38511,0,-2.66447	1/1:238:51,186:51:1788:186:6620:-509.991,-1.37285,0	0/1:136:72,64:72:2580:64:2275:-161.643,0,-63.1328	0/1:29:14,15:14:466:15:532:-39.1851,0,-6.57942	0/1:14:2,12:2:57:12:420:-32.4804,0,-0.573269	0/1:59:42,17:42:1454:17:600:-36.3149,0,-41.0419	0/1:99:83,16:83:2921:16:572:-21.8371,0,-86.9622	0/1:13:7,6:7:248:6:208:-15.0786,0,-6.82587	1/1:40:3,37:3:104:37:1324:-112.989,-6.80343,0	0/1:85:40,45:40:1365:45:1612:-117.663,0,-30.2035	0/1:6:4,2:4:120:2:66:-4.4375,0,-3.36097	1/1:38:3,35:3:108:35:1225:-104.988,-6.79227,0	0/1:45:39,6:39:1363:6:216:-6.09996,0,-25.1972	0/1:80:53,27:53:1871:27:964:-60.9916,0,-36.7978	1/1:97:2,95:2:63:95:3361:-296.366,-23.9412,0	0/1:27:4,23:4:144:23:816:-65.069,0,-2.90097	0/1:65:40,25:40:1409:25:870:-58.4296,0,-17.1066	1/1:6:0,6:0:0:6:212:-19.2688,-1.80618,0	0/1:82:32,50:32:1111:50:1769:-134.18,0,-13.9243	1/1:29:2,27:2:57:27:949:-79.9175,-3.94218,0	1/1:63:2,61:2:68:61:2150:-187.741,-13.4292,0	0/1:87:50,37:50:1700:37:1317:-92.3539,0,-47.4956	1/1:39:0,39:0:0:39:1380:-124.174,-11.7402,0	1/1:77:0,77:0:0:77:2729:-245.044,-23.1793,0	0/1:138:63,75:63:2211:75:2618:-191.914,0,-44.7025	1/1:41:0,41:0:0:41:1442:-128.905,-12.3422,0	0/1:73:40,33:40:1377:33:1152:-81.1061,0,-21.5462	1/1:54:0,54:0:0:54:1903:-170.101,-16.2556,0	1/1:17:1,16:1:36:16:568:-49.9504,-3.91913,0	0/1:49:30,19:30:1064:19:662:-43.843,0,-19.8817	0/1:80:57,23:57:1975:23:808:-47.5957,0,-57.0319	1/1:48:3,45:3:95:45:1607:-139.154,-9.167,0	1/1:81:2,79:2:63:79:2789:-245.323,-19.1247,0
chr11	4232129	.	A	C	38275.3	PASS	AB=0.533221;ABP=42.8307;AC=48;AF=0.255319;AN=188;AO=2220;CIGAR=1X;DP=7650;DPB=7650;DPRA=1.24274;EPP=4823.68;EPPR=11783.2;GTI=2;LEN=1;MEANALT=1.03774;MQM=59.6365;MQMR=59.7924;NS=94;NUMALT=1;ODDS=0.27228;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79599;QR=194102;RO=5425;RPL=0;RPP=4823.68;RPPR=11783.2;RPR=2220;RUN=1;SAF=2220;SAP=4823.68;SAR=0;SRF=5425;SRP=11783.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:75:17,58:17:608:58:2072:-163.396,0,-32.4748	0/1:35:16,19:16:561:19:676:-50.6319,0,-40.2811	0/1:114:58,56:58:2069:56:1989:-144.965,0,-152.148	0/1:175:91,84:91:3219:84:3024:-219.7,0,-237.211	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.322	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.795	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.692	0/0:219:219,0:219:7861:0:0:0,-65.9256,-707.126	0/1:127:42,85:42:1512:85:3048:-236.286,0,-98.1338	0/0:56:56,0:56:2001:0:0:0,-16.8577,-180.23	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.343	0/1:118:59,59:59:2124:59:2120:-155.532,0,-155.829	0/1:67:33,34:33:1184:34:1224:-90.2947,0,-86.6893	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.662	0/0:73:73,0:73:2613:0:0:0,-21.9752,-235.33	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.056	0/1:27:18,9:18:648:9:324:-21.378,0,-50.5174	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.434	0/1:26:12,13:12:432:13:468:-34.5744,0,-31.336	0/1:188:88,100:88:3134:100:3584:-266.16,0,-225.68	0/0:121:121,0:121:4303:0:0:0,-36.4246,-387.435	0/1:130:27,103:27:953:103:3708:-294.782,0,-46.9494	0/1:89:45,44:45:1616:44:1561:-113.983,0,-118.91	0/1:51:20,31:20:716:31:1100:-83.9171,0,-49.4133	0/0:96:96,0:96:3433:0:0:0,-28.8989,-309.18	0/1:228:120,108:120:4312:108:3876:-280.35,0,-319.589	0/0:173:172,1:172:6180:1:36:0,-48.4799,-552.67	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:237:237,0:237:8520:0:0:0,-71.3441,-766.677	0/1:117:50,67:50:1777:67:2408:-181.751,0,-124.986	0/0:51:50,1:50:1777:1:36:0,-11.7543,-156.613	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:181:97,84:97:3473:84:3012:-216.763,0,-258.201	0/1:142:80,62:80:2865:62:2228:-157.519,0,-215.308	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.77	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:112:41,71:41:1476:71:2540:-195.111,0,-99.4116	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.072	0/0:141:141,0:141:5038:0:0:0,-42.4452,-453.528	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.111	0/1:61:39,22:39:1400:22:792:-53.1104,0,-107.934	0/1:98:44,54:44:1584:54:1944:-145.717,0,-113.349	0/1:125:59,66:59:2105:66:2372:-176.074,0,-151.998	0/0:113:112,1:112:4009:1:36:0,-30.4181,-357.39	0/1:84:46,38:46:1637:38:1368:-98.1343,0,-122.325	0/1:72:35,37:35:1260:37:1324:-97.781,0,-92.029	0/0:123:122,1:122:4368:1:36:0,-33.4284,-389.693	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:111:111,0:111:3969:0:0:0,-33.4143,-357.386	0/1:32:10,22:10:360:22:788:-61.6118,0,-23.1113	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:107:62,45:62:2228:45:1612:-113.155,0,-168.56	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.422	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.986	0/1:87:37,50:37:1328:50:1785:-134.728,0,-93.6326	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:160:78,82:78:2792:82:2952:-217.748,0,-203.34	0/1:115:55,60:55:1976:60:2148:-158.668,0,-143.494	0/1:46:24,22:24:840:22:792:-57.7549,0,-61.9242	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.405	0/1:137:92,45:92:3297:45:1582:-101.425,0,-255.696	0/1:132:35,97:35:1237:97:3480:-273.555,0,-71.8963	0/1:9:2,7:2:72:7:248:-19.9503,0,-4.12745	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:45:28,17:28:1000:17:612:-41.8671,0,-76.769	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:101:100,1:100:3558:1:36:0,-26.8058,-316.813	0/1:73:35,38:35:1260:38:1364:-101.081,0,-91.6997	0/1:97:38,59:38:1364:59:2116:-161.021,0,-93.8608	0/0:134:134,0:134:4789:0:0:0,-40.338,-430.529	0/0:124:124,0:124:4441:0:0:0,-37.3277,-399.835	0/1:96:52,44:52:1868:44:1580:-113.583,0,-139.5	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:92:59,33:59:2094:33:1184:-79.1736,0,-161.022	0/0:116:116,0:116:4104:0:0:0,-34.9195,-369.522	0/0:260:260,0:260:9291:0:0:0,-78.2678,-836.126	0/1:58:27,30:27:949:30:1068:-78.9016,0,-68.205	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:65:62,0:62:2232:0:0:0,-18.6639,-200.782	0/1:159:67,92:67:2408:92:3312:-250.361,0,-169.08	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:77:34,43:34:1216:43:1542:-115.885,0,-86.5606	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:54:19,35:19:676:35:1252:-96.7286,0,-44.9078	0/1:93:32,61:32:1152:61:2196:-169.816,0,-75.9944	0/0:162:162,0:162:5760:0:0:0,-48.7669,-518.506	0/0:130:130,0:130:4676:0:0:0,-39.1339,-420.992
chr11	4232165	.	A	G	110603	PASS	AB=0.461985;ABP=54.8501;AC=140;AF=0.744681;AN=188;AO=5344;CIGAR=1X;DP=7581;DPB=7581;DPRA=0;EPP=11607.4;EPPR=4845.39;GTI=3;LEN=1;MEANALT=1.02128;MQM=59.793;MQMR=59.6556;NS=94;NUMALT=1;ODDS=0.415826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190971;QR=79985;RO=2230;RPL=5339;RPP=11564;RPPR=4836.71;RPR=5;RUN=1;SAF=5339;SAP=11564;SAR=5;SRF=2229;SRP=4836.71;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:58,16:58:2067:16:576:-29.8988,0,-163.241	0/1:35:19,16:19:680:16:572:-41.2774,0,-50.9931	0/1:111:55,56:55:1980:56:2003:-147.115,0,-145.06	0/1:172:84,88:84:3020:88:3145:-231.458,0,-220.246	1/1:73:0,73:0:0:73:2624:-236.392,-21.9752,0	1/1:47:0,47:0:0:47:1684:-151.837,-14.1484,0	1/1:17:0,17:0:0:17:550:-49.8054,-5.11751,0	1/1:209:0,209:0:0:209:7478:-673.001,-62.9153,0	0/1:127:86,41:86:3096:41:1472:-94.5353,0,-240.603	1/1:56:0,56:0:0:56:1989:-179.223,-16.8577,0	1/1:36:1,35:1:36:35:1245:-108.752,-7.23881,0	0/1:118:59,59:59:2116:59:2107:-154.299,0,-155.164	0/1:67:33,34:33:1188:34:1206:-88.6198,0,-87.0596	1/1:60:0,60:0:0:60:2131:-192.056,-18.0618,0	1/1:72:0,72:0:0:72:2576:-232.085,-21.6742,0	1/1:64:0,64:0:0:64:2263:-203.907,-19.2659,0	0/1:27:9,18:9:324:18:648:-50.5174,0,-21.378	1/1:27:0,27:0:0:27:972:-87.7946,-8.12781,0	0/1:25:13,12:13:468:12:432:-31.6921,0,-34.9339	0/1:188:100,88:100:3569:88:3158:-227.843,0,-264.807	1/1:118:0,118:0:0:118:4236:-381.414,-35.5215,0	0/1:132:103,29:103:3700:29:1044:-54.5379,0,-293.463	0/1:91:47,44:47:1668:44:1580:-115.097,0,-123.004	0/1:49:30,19:30:1068:19:675:-46.3219,0,-81.6701	1/1:94:0,94:0:0:94:3372:-303.692,-28.2968,0	0/1:226:107,117:107:3829:117:4188:-309.28,0,-276.967	1/1:170:1,169:1:36:169:6023:-538.554,-47.5768,0	1/1:37:1,36:1:36:36:1292:-112.985,-7.53984,0	1/1:239:0,234:0:0:234:8352:-751.278,-70.441,0	0/1:118:68,50:68:2448:50:1757:-122.888,0,-185.048	1/1:50:1,49:1:36:49:1719:-151.393,-11.4532,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:13:0,13:0:0:13:455:-41.282,-3.91339,0	1/1:11:0,11:0:0:11:369:-33.5326,-3.31133,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:179:83,96:83:2988:96:3406:-252.847,0,-215.205	0/1:139:61,78:61:2192:78:2800:-210.364,0,-155.313	1/1:40:0,40:0:0:40:1432:-129.164,-12.0412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:111:70,41:70:2516:41:1463:-98.5418,0,-193.261	1/1:33:0,33:0:0:33:1171:-105.657,-9.93399,0	1/1:144:0,144:0:0:144:5156:-464.147,-43.3483,0	1/1:55:0,55:0:0:55:1962:-176.853,-16.5567,0	0/1:59:22,37:22:792:37:1332:-102.419,0,-53.7125	0/1:99:56,43:56:2012:43:1528:-108.009,0,-151.534	0/1:129:69,60:69:2484:60:2156:-155.383,0,-184.945	1/1:111:1,110:1:36:110:3944:-351.546,-29.8161,0	0/1:83:37,46:37:1332:46:1643:-123.169,0,-95.1969	0/1:72:38,34:38:1353:34:1220:-88.4303,0,-100.387	1/1:120:1,119:1:36:119:4248:-378.897,-32.5253,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:110:0,110:0:0:110:3952:-355.857,-33.1133,0	0/1:32:22,10:22:788:10:360:-23.1113,0,-61.6118	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:107:45,62:45:1605:62:2228:-168.56,0,-112.523	1/1:40:0,40:0:0:40:1432:-129.175,-12.0412,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	1/1:32:0,32:0:0:32:1152:-103.986,-9.63296,0	0/1:87:50,37:50:1792:37:1332:-93.9928,0,-135.358	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:159:83,76:83:2988:76:2723:-197.446,0,-221.273	0/1:115:60,55:60:2141:55:1961:-142.143,0,-158.031	0/1:45:21,24:21:756:24:854:-63.5364,0,-54.8209	1/1:72:0,72:0:0:72:2588:-233.166,-21.6742,0	0/1:135:45,90:45:1616:90:3197:-247.311,0,-105.091	0/1:133:100,33:100:3587:33:1180:-66.4711,0,-282.884	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6161	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:45:17,28:17:612:28:996:-76.4085,0,-41.8671	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:98:1,97:1:36:97:3446:-306.75,-25.9027,0	0/1:72:38,34:38:1368:34:1219:-88.3399,0,-101.74	0/1:95:59,36:59:2116:36:1287:-87.5349,0,-161.676	1/1:134:0,134:0:0:134:4774:-429.699,-40.338,0	1/1:124:0,124:0:0:124:4441:-399.835,-37.3277,0	0/1:95:43,52:43:1548:52:1860:-139.08,0,-111.004	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:92:33,59:33:1165:59:2116:-163.005,0,-77.4602	1/1:114:1,113:1:36:113:4028:-359.085,-30.7191,0	1/1:256:0,256:0:0:256:9180:-826.139,-77.0637,0	0/1:57:30,27:30:1080:27:968:-70.2725,0,-80.3276	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:62:0,62:0:0:62:2220:-200.056,-18.6639,0	0/1:155:90,65:90:3232:65:2317:-162.114,0,-244.425	1/1:15:1,14:1:36:14:500:-41.7379,-0.917175,0	0/1:78:45,33:45:1597:33:1179:-82.9302,0,-120.529	1/1:73:0,73:0:0:73:2607:-234.878,-21.9752,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:54:35,19:35:1260:19:675:-44.8167,0,-97.4483	0/1:93:61,32:61:2188:32:1135:-74.4623,0,-169.094	1/1:161:0,161:0:0:161:5784:-520.665,-48.4658,0	1/1:129:1,128:1:36:128:4578:-408.579,-35.2346,0
chr11	4237155	.	C	T	23970.2	PASS	AB=0.4771;ABP=16.834;AC=48;AF=0.255319;AN=188;AO=1453;CIGAR=1X;DP=5539;DPB=5539;DPRA=1.24759;EPP=3149.48;EPPR=8812.78;GTI=0;LEN=1;MEANALT=1.01887;MQM=59.9711;MQMR=59.9807;NS=94;NUMALT=1;ODDS=2.20385;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52050;QR=146249;RO=4085;RPL=1;RPP=3149.48;RPPR=8812.78;RPR=1452;RUN=1;SAF=1453;SAP=3158.16;SAR=0;SRF=4085;SRP=8873.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:15,14:15:536:14:496:-36.2444,0,-39.8449	0/1:51:26,25:26:932:25:885:-64.614,0,-68.8463	0/1:58:32,26:32:1148:26:936:-67.0997,0,-86.1701	0/1:95:46,49:46:1644:49:1749:-129.094,0,-119.65	0/0:41:39,1:39:1404:1:27:0,-9.65632,-123.915	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:54:22,32:22:788:32:1148:-87.3742,0,-54.9892	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/1:67:29,38:29:1036:38:1360:-102.532,0,-73.3712	0/1:66:30,36:30:1080:36:1292:-96.7158,0,-77.6453	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/1:45:28,17:28:999:17:604:-41.1443,0,-76.6782	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:35:18,17:18:640:17:612:-44.8774,0,-47.3933	0/1:67:37,30:37:1328:30:1080:-77.3442,0,-99.6532	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/1:68:25,43:25:900:43:1536:-118.062,0,-60.851	0/1:60:37,23:37:1324:23:824:-56.4215,0,-101.4	0/1:57:28,29:28:1004:29:1040:-76.7552,0,-73.5172	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:177:102,75:102:3635:75:2681:-188.24,0,-274.065	0/0:137:137,0:137:4887:0:0:0,-41.2411,-439.984	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:96:96,0:96:3439:0:0:0,-28.8989,-309.294	0/1:57:38,19:38:1360:19:684:-44.7316,0,-105.542	0/0:64:63,1:63:2260:1:36:0,-15.6676,-200.064	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:138:71,67:71:2521:67:2412:-175.794,0,-185.598	0/1:137:81,56:81:2912:56:2009:-139.834,0,-221.073	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:64:44,20:44:1567:20:716:-45.4999,0,-122.055	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:79:78,1:78:2778:1:36:0,-20.1831,-246.662	0/0:48:48,0:48:1719:0:0:0,-14.4494,-154.995	0/1:60:22,38:22:792:38:1351:-103.828,0,-53.5439	0/1:70:39,31:39:1389:31:1116:-79.6796,0,-104.235	0/1:57:27,30:27:964:30:1071:-79.5429,0,-69.9099	0/0:94:93,1:93:3328:1:36:0,-24.6985,-296.14	0/1:86:39,47:39:1400:47:1692:-126.678,0,-100.411	0/1:76:59,17:59:2097:17:612:-32.5352,0,-166.12	0/0:92:92,0:92:3312:0:0:0,-27.6948,-298.297	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/1:30:15,15:15:540:15:536:-39.5439,0,-39.9056	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:70:35,35:35:1256:35:1245:-91.2806,0,-92.2732	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:86:51,35:51:1828:35:1252:-87.0965,0,-138.912	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:72:55,17:55:1980:17:608:-33.3779,0,-156.8	0/1:132:66,66:66:2372:66:2376:-174.361,0,-174.002	0/1:44:20,24:20:716:24:859:-64.3864,0,-51.5224	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.002	0/1:115:54,61:54:1936:61:2184:-162.208,0,-139.898	0/1:71:23,48:23:828:48:1718:-133.532,0,-53.471	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/1:68:31,37:31:1107:37:1332:-99.7123,0,-79.4701	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.738	0/1:56:28,28:28:1008:28:1000:-73.4577,0,-74.1787	0/1:93:35,58:35:1234:58:2072:-158.755,0,-83.3669	0/0:106:105,1:105:3754:1:36:0,-28.3109,-334.461	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/1:45:28,17:28:1004:17:604:-41.1443,0,-77.1295	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:75:44,31:44:1567:31:1112:-77.8095,0,-118.744	0/0:63:63,0:63:2238:0:0:0,-18.9649,-201.683	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.882	0/1:80:45,35:45:1608:35:1255:-89.1718,0,-120.928	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/1:121:60,61:60:2148:61:2188:-160.761,0,-157.163	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:54:30,24:30:1076:24:860:-61.4662,0,-80.8972	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:59:32,27:32:1148:27:972:-70.0371,0,-85.8691	0/1:39:13,26:13:468:26:936:-72.8193,0,-30.7195	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432
chr11	4262222	.	C	T	21326.7	PASS	AB=0.552419;ABP=56.2814;AC=52;AF=0.276596;AN=188;AO=1243;CIGAR=1X;DP=3683;DPB=3683;DPRA=1.42885;EPP=2702.15;EPPR=5277.53;GTI=3;LEN=1;MEANALT=1.02041;MQM=59.716;MQMR=59.9528;NS=94;NUMALT=1;ODDS=0.0337907;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44510;QR=87131;RO=2437;RPL=1243;RPP=2702.15;RPPR=5277.53;RPR=0;RUN=1;SAF=0;SAP=2702.15;SAR=1243;SRF=0;SRP=5294.89;SRR=2437;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:39:14,25:14:504:25:900:-69.5808,0,-33.9579	0/1:38:13,25:13:464:25:881:-68.1612,0,-30.6584	0/1:53:23,30:23:824:30:1080:-81.5587,0,-58.5287	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.2281	0/1:19:4,15:4:140:15:540:-43.217,0,-7.22501	0/0:86:86,0:86:3060:0:0:0,-25.8886,-275.628	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:41:22,19:22:788:19:684:-49.5399,0,-58.9026	0/1:47:23,24:23:820:24:854:-63.006,0,-59.9741	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.001	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/1:57:23,34:23:828:34:1224:-93.3002,0,-57.6854	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	0/1:24:9,15:9:309:15:540:-41.7095,0,-20.916	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.629	0/1:29:8,21:8:288:21:756:-59.635,0,-17.5375	0/1:17:6,11:6:216:11:377:-29.1404,0,-14.673	0/1:42:24,18:24:860:18:648:-46.004,0,-65.0786	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/1:79:28,51:28:1008:51:1832:-141.379,0,-67.255	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:46:19,27:19:684:27:972:-73.9398,0,-48.0429	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:170:95,75:95:3396:75:2681:-190.327,0,-254.622	0/1:50:30,19:30:1061:19:680:-46.419,0,-80.6893	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:28:10,18:10:360:18:644:-49.8102,0,-24.3155	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.33	0/1:50:26,24:26:924:24:858:-62.4821,0,-68.4262	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	0/1:24:13,11:13:468:11:392:-28.392,0,-35.2349	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.581	0/1:25:9,16:9:320:16:576:-44.6492,0,-21.6166	0/1:76:32,44:32:1144:44:1576:-119.25,0,-80.3912	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9356	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:49:27,22:27:953:22:773:-55.1308,0,-71.3328	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:5:2,3:2:72:3:108:-8.56908,0,-5.33157	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:82:48,34:48:1720:34:1220:-85.4223,0,-130.401	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:171:89,82:89:3177:82:2952:-214.435,0,-234.591	0/1:50:20,30:20:720:30:1080:-82.4449,0,-50.0773	0/1:47:22,25:22:777:25:900:-67.1634,0,-56.102	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:47:22,25:22:784:25:900:-67.1703,0,-56.7346	0/1:44:21,23:21:756:23:813:-60.2438,0,-55.1219	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/1:70:26,44:26:936:44:1580:-121.416,0,-63.4874	0/1:25:10,15:10:360:15:540:-41.4108,0,-25.2186	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:84:36,48:36:1292:48:1728:-130.413,0,-91.2972	0/1:46:17,29:17:612:29:1040:-80.0615,0,-41.5661	0/0:59:58,0:58:2084:0:0:0,-17.4597,-187.47	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7361	0/1:87:32,55:32:1144:55:1969:-151.293,0,-77.0799	0/1:20:6,14:6:216:14:489:-38.3183,0,-13.7699	0/1:28:6,22:6:216:22:792:-63.1722,0,-11.3617	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/1:59:21,38:21:756:38:1368:-105.651,0,-50.6065	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/1:103:42,61:42:1512:61:2173:-164.817,0,-105.369	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:62:37,25:37:1317:25:896:-62.2883,0,-100.166	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:70:31,39:31:1116:39:1389:-104.029,0,-79.6796	0/1:46:13,33:13:468:33:1165:-91.304,0,-28.6123	0/0:122:122,0:122:4350:0:0:0,-36.7257,-391.654	0/0:74:73,0:73:2616:0:0:0,-21.9752,-235.328
chr11	4278097	.	GTCC	GTCA,ATCA	140298	PASS	AB=0.32487,0.671384;ABP=1283.07,1228.89;AC=136,50;AF=0.731183,0.268817;AN=186;AO=3882,3235;CIGAR=3M1X,1X2M1X;DP=7147;DPB=7147;DPRA=38.8315,1.89982;EPP=8432.67,7027.72;EPPR=7.35324;GTI=10;LEN=1,4;MEANALT=1.8913,2.34545;MQM=52.6363,37.3929;MQMR=60;NS=93;NUMALT=2;ODDS=11619.1;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=139233,114333;QR=71;RO=2;RPL=3882,3235;RPP=8432.67,7027.72;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=3882,3235;SAP=8432.67,7027.72;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,5,20:0:0:5,20:180,705:-67.9733,-53.3209,-51.8158,-14.7036,0,-8.68298	1/2:143:0,45,98:0:0:45,98:1620,3484:-398.44,-266.781,-253.234,-132.011,0,-102.51	1/2:101:0,41,60:0:0:41,60:1452,2131:-279.998,-162.478,-150.136,-117.865,0,-99.8032	1/2:200:0,57,143:0:0:57,143:2048,5054:-546.984,-380.373,-363.214,-166.962,0,-123.914	1/1:41:0,40,1:0:0:40,1:1432,35:-128.501,-12.0412,0,-125.811,-9.01862,-125.51	1/1:44:0,43,0:0:0:43,0:1547,0:-138.333,-12.9443,0,-138.333,-12.9443,-138.333	1/1:83:0,82,1:0:0:82,1:2923,35:-262.104,-24.6845,0,-259.446,-21.6979,-259.145	1/1:75:0,72,2:0:0:72,2:2580,72:-230.916,-21.6742,0,-225.42,-16.1785,-224.818	1/2:72:0,10,62:0:0:10,62:360,2194:-196.931,-167.634,-164.624,-29.6517,0,-10.9878	1/1:100:0,99,1:0:0:99,1:3560,35:-319.491,-29.802,0,-316.834,-26.8154,-316.533	1/1:27:0,26,0:0:0:26,0:923,0:-82.5676,-7.82678,0,-82.5676,-7.82678,-82.5676	1/2:54:0,27,27:0:0:27,27:972,948:-149.872,-70.7641,-62.6363,-79.4494,0,-71.3216	1/2:65:0,23,41:0:0:23,41:828,1446:-175.249,-107.869,-100.946,-67.4055,0,-55.0632	1/1:37:0,37,0:0:0:37,0:1328,0:-119.508,-11.1381,0,-119.508,-11.1381,-119.508	1/1:40:0,40,0:0:0:40,0:1440,0:-129.396,-12.0412,0,-129.396,-12.0412,-129.396	1/1:27:0,27,0:0:0:27,0:968,0:-86.9428,-8.12781,0,-86.9428,-8.12781,-86.9428	1/2:51:0,21,30:0:0:21,30:752,1071:-142.751,-81.5813,-75.2597,-61.5176,0,-52.4867	1/1:36:0,36,0:0:0:36,0:1296,0:-116.661,-10.8371,0,-116.661,-10.8371,-116.661	1/2:30:0,15,15:0:0:15,15:540,531:-84.3421,-40.3886,-35.8731,-44.2981,0,-39.7826	1/2:196:0,47,149:0:0:47,149:1684,5295:-535.109,-398.141,-383.992,-137.319,0,-92.4658	1/1:68:0,68,0:0:0:68,0:2433,0:-218.648,-20.47,0,-218.648,-20.47,-218.648	1/2:193:0,24,169:0:0:24,169:860,6001:-526.609,-456.651,-449.427,-70.3122,0,-19.4381	1/2:24:0,7,17:0:0:7,17:252,610:-66.9106,-46.3822,-44.275,-20.8804,0,-15.7629	1/2:111:0,33,77:0:0:33,77:1188,2716:-300.71,-204.09,-194.156,-96.7241,0,-73.5447	1/1:20:0,20,0:0:0:20,0:708,0:-63.876,-6.0206,0,-63.876,-6.0206,-63.876	1/2:301:0,81,219:0:0:81,219:2908,7694:-822.416,-585.641,-561.258,-236.849,0,-170.924	1/1:108:0,108,0:0:0:108,0:3872,0:-347.501,-32.5112,0,-347.501,-32.5112,-347.501	1/1:22:0,20,1:0:0:20,1:720,36:-64.6836,-6.0206,0,-61.8762,-3.21933,-61.5752	1/1:142:0,142,0:0:0:142,0:5100,0:-458.066,-42.7463,0,-458.066,-42.7463,-458.066	1/2:179:0,56,123:0:0:56,123:2008,4336:-491.935,-328.435,-311.577,-163.849,0,-126.822	1/1:68:0,68,0:0:0:68,0:2444,0:-219.384,-20.47,0,-219.384,-20.47,-219.384	1/1:2:0,2,0:0:0:2,0:72,0:-6.82703,-0.60206,0,-6.82703,-0.60206,-6.82703	1/1:9:0,9,0:0:0:9,0:320,0:-29.1033,-2.70927,0,-29.1033,-2.70927,-29.1033	1/1:2:0,2,0:0:0:2,0:72,0:-6.81953,-0.60206,0,-6.81953,-0.60206,-6.81953	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:144,0:-13.2801,-1.20412,0,-13.2801,-1.20412,-13.2801	1/2:172:0,73,99:0:0:73,99:2607,3504:-477.527,-265.3,-243.325,-212.573,0,-182.771	1/2:221:0,45,175:0:0:45,175:1620,6155:-599.144,-467.77,-454.223,-131.519,0,-78.8386	1/1:26:0,26,0:0:0:26,0:932,0:-83.9295,-7.82678,0,-83.9295,-7.82678,-83.9295	2/2:2:0,0,2:0:0:0,2:0,72:-6.43644,-6.43644,-6.43644,-0.60206,-0.60206,0	1/2:171:0,57,114:0:0:57,114:2048,4018:-473.064,-306.551,-289.392,-166.862,0,-132.545	1/1:15:0,15,0:0:0:15,0:536,0:-48.4579,-4.51545,0,-48.4579,-4.51545,-48.4579	1/1:64:0,64,0:0:0:64,0:2292,0:-205.824,-19.2659,0,-205.824,-19.2659,-205.824	1/1:46:0,46,0:0:0:46,0:1656,0:-148.774,-13.8474,0,-148.774,-13.8474,-148.774	1/2:43:0,17,26:0:0:17,26:612,916:-116.909,-67.2778,-62.1603,-49.974,0,-42.1472	1/2:64:0,13,51:0:0:13,51:468,1796:-173.993,-135.831,-131.917,-38.5156,0,-23.1631	1/2:121:2,26,92:2:71:26,92:936,3216:-315.448,-240.009,-237.968,-70.283,0,-48.3735	1/1:119:0,119,0:0:0:119,0:4260,0:-381.429,-35.8226,0,-381.429,-35.8226,-381.429	1/2:115:0,33,82:0:0:33,82:1184,2898:-314.228,-218.135,-208.201,-96.4422,0,-71.7577	1/2:143:0,57,85:0:0:57,85:2048,3005:-393.101,-226.456,-209.298,-166.756,0,-141.169	1/1:126:0,126,0:0:0:126,0:4524,0:-406.733,-37.9298,0,-406.733,-37.9298,-406.733	1/2:10:0,1,9:0:0:1,9:36,320:-27.6201,-24.6884,-24.3873,-3.2882,0,-0.578928	1/1:77:0,76,0:0:0:76,0:2732,0:-244.957,-22.8783,0,-244.957,-22.8783,-244.957	1/2:38:0,14,24:0:0:14,24:504,830:-104.893,-63.8016,-59.5872,-41.439,0,-34.2143	1/1:13:0,13,0:0:0:13,0:468,0:-42.3529,-3.91339,0,-42.3529,-3.91339,-42.3529	1/2:101:0,41,60:0:0:41,60:1464,2124:-281.536,-162.359,-150.017,-119.524,0,-101.462	1/1:5:0,5,0:0:0:5,0:180,0:-16.5105,-1.50515,0,-16.5105,-1.50515,-16.5105	1/2:3:0,2,1:0:0:2,1:72,36:-8.97061,-3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chr11	4278186	.	A	G	44683.7	PASS	AB=0.76391;ABP=1568.65;AC=56;AF=0.301075;AN=186;AO=2408;CIGAR=1X;DP=4087;DPB=4087;DPRA=2.58229;EPP=5205.89;EPPR=3562.57;GTI=30;LEN=1;MEANALT=1;MQM=49.9913;MQMR=50.6188;NS=93;NUMALT=1;ODDS=0.128108;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86157;QR=60159;RO=1679;RPL=2405;RPP=5205.89;RPPR=3562.57;RPR=3;RUN=1;SAF=0;SAP=5231.92;SAR=2408;SRF=0;SRP=3648.91;SRR=1679;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:1,36:1:36:36:1288:-111.952,-7.53984,0	0/1:30:12,18:12:432:18:636:-48.3137,0,-29.6629	0/1:117:20,97:20:720:97:3476:-275.633,0,-29.1024	0/1:140:25,115:25:896:115:4089:-324.554,0,-38.1847	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.8615	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.68	0/0:27:27,0:27:972:0:0:0,-8.12781,-86.6314	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.5666	0/1:54:16,38:16:572:38:1368:-106.643,0,-34.4515	0/0:28:28,0:28:1008:0:0:0,-8.42884,-88.837	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.1444	0/1:55:9,46:9:324:46:1648:-131.102,0,-12.4764	0/1:44:17,27:17:608:27:959:-73.0555,0,-41.4521	0/0:27:27,0:27:972:0:0:0,-8.12781,-86.683	0/0:21:21,0:21:756:0:0:0,-6.32163,-66.3642	0/0:22:22,0:22:792:0:0:0,-6.62266,-70.7845	0/1:24:7,17:7:248:17:612:-47.9504,0,-15.1576	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.3038	0/1:26:10,16:10:360:16:572:-43.7875,0,-24.6386	0/1:157:26,131:26:936:131:4696:-373.401,0,-36.4634	0/0:40:40,0:40:1432:0:0:0,-12.0412,-127.953	1/1:154:13,141:13:468:141:5052:-411.096,-4.91956,0	0/1:30:3,27:3:108:27:963:-77.5955,0,-0.863629	0/1:34:16,18:16:572:18:648:-48.1396,0,-40.9434	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.552	0/1:143:29,114:29:1036:114:4096:-324.213,0,-49.2565	0/0:51:51,0:51:1836:0:0:0,-15.3525,-162.897	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.7892	0/0:51:51,0:51:1832:0:0:0,-15.3525,-162.737	0/1:84:17,67:17:612:67:2404:-190.449,0,-29.2227	0/0:18:18,0:18:627:0:0:0,-5.41854,-55.9139	.:.:.:.:.:.:.:.	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.7616	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2676	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.65286	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.236	0/1:102:36,66:36:1288:66:2351:-180.095,0,-84.2973	0/1:105:16,89:16:576:89:3177:-253.302,0,-19.4067	0/0:18:18,0:18:648:0:0:0,-5.41854,-57.9566	0/1:3:1,2:1:36:2:68:-5.53432,0,-2.69518	0/1:89:14,75:14:504:75:2688:-214.368,0,-18.709	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.3073	0/0:52:52,0:52:1853:0:0:0,-15.6536,-164.757	0/0:16:16,0:16:576:0:0:0,-4.81648,-51.3556	0/1:21:4,17:4:144:17:608:-48.5042,0,-6.7119	0/1:108:15,93:15:536:93:3340:-266.785,0,-15.6056	0/1:76:18,58:18:644:58:2071:-163.032,0,-34.6838	0/0:24:24,0:24:860:0:0:0,-7.22472,-76.9545	1/1:66:5,61:5:180:61:2192:-180.23,-3.36851,0	0/1:55:15,40:15:540:40:1432:-112.045,0,-31.7599	0/0:66:66,0:66:2372:0:0:0,-19.868,-211.609	0/1:7:4,3:4:140:3:108:-7.92533,0,-10.7583	0/0:38:38,0:38:1368:0:0:0,-11.4391,-121.097	0/1:48:17,31:17:612:31:1116:-85.876,0,-40.1762	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5063	0/1:69:13,56:13:453:56:2000:-158.767,0,-19.1686	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.0315	1/1:2:0,2:0:0:2:72:-6.80779,-0.60206,0	0/1:12:2,10:2:72:10:360:-29.0026,0,-3.17709	0/0:13:13,0:13:464:0:0:0,-3.91339,-41.6584	0/1:68:19,49:19:680:49:1764:-137.854,0,-38.7125	0/1:8:2,6:2:72:6:216:-17.2985,0,-4.38121	0/1:96:35,61:35:1260:61:2183:-167.019,0,-83.575	0/1:93:14,79:14:504:79:2836:-226.344,0,-17.5672	1/1:51:3,48:3:93:48:1697:-143.347,-6.85799,0	0/0:21:20,1:20:716:1:36:0,-2.73858,-60.0884	0/1:113:20,93:20:716:93:3331:-264.714,0,-29.7128	1/1:116:9,107:9:324:107:3852:-316.037,-5.81164,0	1/1:35:3,32:3:108:32:1131:-91.8365,-0.655731,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.8912	0/1:28:11,17:11:396:17:608:-46.2199,0,-26.8119	0/1:18:9,9:9:320:9:324:-23.9625,0,-23.4932	0/0:21:21,0:21:744:0:0:0,-6.32163,-66.5924	0/1:54:21,33:21:756:33:1171:-89.0661,0,-49.8168	0/1:103:18,85:18:648:85:3023:-240.234,0,-26.9922	0/0:63:63,0:63:2268:0:0:0,-18.9649,-201.734	0/0:31:29,2:29:1040:2:72:0,-2.52413,-86.0719	0/1:53:20,33:20:705:33:1184:-90.4259,0,-47.085	0/1:7:2,5:2:72:5:180:-14.3748,0,-4.68224	0/1:49:7,42:7:252:42:1482:-118.399,0,-8.21907	0/0:20:20,0:20:701:0:0:0,-6.0206,-62.6073	0/0:38:38,0:38:1360:0:0:0,-11.4391,-121.208	0/1:35:17,18:17:612:18:648:-47.8677,0,-43.9664	0/0:24:24,0:24:864:0:0:0,-7.22472,-76.4713	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.1892	0/1:59:14,45:14:496:45:1603:-126.209,0,-26.4309	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.3972	0/1:42:14,28:14:496:28:990:-76.2316,0,-31.7052	0/0:23:23,0:23:824:0:0:0,-6.92369,-73.5308	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.3368	0/1:82:21,61:21:756:61:2188:-171.705,0,-43.139	0/1:47:5,42:5:180:42:1512:-121.685,0,-2.21159	0/0:72:72,0:72:2580:0:0:0,-21.6742,-229.205	0/0:30:29,1:29:1035:1:36:0,-5.43307,-87.9475
chr11	4552228	.	C	T	199220	PASS	AB=0.479176;ABP=28.9662;AC=140;AF=0.744681;AN=188;AO=9528;CIGAR=1X;DP=13134;DPB=13134;DPRA=141.215;EPP=20692.8;EPPR=7826.83;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.277;MQMR=59.9445;NS=94;NUMALT=1;ODDS=0.401848;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=341419;QR=129035;RO=3603;RPL=0;RPP=20692.8;RPPR=7826.83;RPR=9528;RUN=1;SAF=9528;SAP=20692.8;SAR=0;SRF=3603;SRP=7826.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:71:0,71:0:0:71:2537:-228.535,-21.3731,0	0/1:360:200,160:200:7184:160:5752:-409.296,0,-538.24	1/1:202:0,202:0:0:202:7222:-649.64,-60.8081,0	0/1:298:165,133:165:5920:133:4749:-336.812,0,-443.199	1/1:139:0,139:0:0:139:4984:-447.946,-41.8432,0	1/1:82:0,82:0:0:82:2948:-265.419,-24.6845,0	1/1:174:0,174:0:0:174:6244:-561.893,-52.3792,0	1/1:320:4,316:4:144:316:11297:-1002.11,-83.016,0	0/1:102:49,53:49:1748:53:1896:-140.182,0,-126.891	1/1:163:0,163:0:0:163:5817:-523.32,-49.0679,0	1/1:60:0,60:0:0:60:2152:-193.8,-18.0618,0	0/1:110:49,61:49:1760:61:2180:-163.263,0,-125.571	0/1:108:55,53:55:1972:53:1908:-139.441,0,-145.244	1/1:92:0,92:0:0:92:3287:-295.133,-27.6948,0	1/1:101:0,101:0:0:101:3621:-325.968,-30.404,0	1/1:85:0,85:0:0:85:3056:-275.201,-25.5876,0	0/1:119:66,53:66:2359:53:1904:-135.743,0,-176.708	0/1:95:48,47:48:1720:47:1692:-123.731,0,-126.488	1/1:26:0,26:0:0:26:932:-84.1673,-7.82678,0	0/1:389:212,177:212:7600:177:6352:-454.262,0,-566.934	1/1:229:0,229:0:0:229:8228:-740.069,-68.9359,0	0/1:120:81,39:81:2896:39:1396:-89.7155,0,-224.753	0/1:120:63,57:63:2264:57:2032:-146.73,0,-167.899	0/1:143:70,73:70:2508:73:2616:-192.64,0,-182.925	1/1:129:0,129:0:0:129:4628:-415.883,-38.8329,0	0/1:466:246,220:246:8804:220:7866:-566.459,0,-652.066	1/1:294:0,294:0:0:294:10552:-948.934,-88.5028,0	1/1:65:0,65:0:0:65:2328:-209.735,-19.567,0	1/1:322:2,320:2:72:320:11462:-1024.24,-90.0949,0	0/1:236:103,133:103:3647:133:4776:-358.635,0,-257.389	1/1:123:0,123:0:0:123:4420:-397.8,-37.0267,0	0/1:20:9,11:9:324:11:396:-29.9396,0,-23.4853	1/1:13:0,13:0:0:13:468:-42.4145,-3.91339,0	1/1:5:0,5:0:0:5:180:-16.5292,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7677,-1.80618,0	0/1:250:132,117:132:4724:117:4195:-302.221,0,-350.003	0/1:206:97,108:97:3455:108:3872:-286.324,0,-249.092	1/1:75:0,75:0:0:75:2677:-241.165,-22.5773,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:207:0,207:0:0:207:7409:-666.731,-62.3132,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:197:0,197:0:0:197:7064:-634.765,-59.3029,0	1/1:119:0,119:0:0:119:4268:-383.348,-35.8226,0	0/1:92:56,36:56:2008:36:1296:-89.2208,0,-153.299	0/1:105:55,50:55:1976:50:1777:-128.475,0,-145.484	0/1:199:115,84:115:4107:84:3012:-210.901,0,-309.455	1/1:362:3,359:3:108:359:12877:-1148.09,-98.8977,0	0/1:150:79,71:79:2824:71:2552:-184.775,0,-209.174	0/1:243:126,117:126:4508:117:4200:-305.001,0,-332.725	1/1:113:0,113:0:0:113:4048:-364.317,-34.0164,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:189:0,189:0:0:189:6800:-611.551,-56.8947,0	0/1:52:39,13:39:1388:13:468:-26.8061,0,-109.565	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:172:105,67:105:3756:67:2385:-163.072,0,-286.463	0/1:68:28,40:28:1008:40:1436:-109.068,0,-70.5663	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/1:42:27,15:27:972:15:540:-36.2933,0,-75.1546	1/1:97:2,95:2:72:95:3393:-298.25,-22.3632,0	0/1:122:57,65:57:2040:65:2340:-173.801,0,-147.146	0/1:14:10,4:10:360:4:140:-8.73016,0,-28.5299	0/1:288:134,154:134:4812:154:5508:-409.007,0,-346.537	0/1:357:154,203:154:5520:203:7254:-545.244,0,-389.457	0/1:90:44,46:44:1568:46:1648:-121.493,0,-114.319	1/1:91:1,90:1:36:90:3232:-286.817,-23.7955,0	0/1:298:167,131:167:5988:131:4666:-329.642,0,-449.315	1/1:137:2,135:2:68:135:4829:-428.208,-34.7834,0	0/1:27:15,12:15:536:12:432:-31.0483,0,-40.447	1/1:115:0,115:0:0:115:4136:-372.274,-34.6185,0	1/1:129:0,129:0:0:129:4628:-416.034,-38.8329,0	0/1:25:15,10:15:536:10:356:-24.8555,0,-41.0491	1/1:88:0,88:0:0:88:3156:-283.975,-26.4906,0	0/1:104:57,47:57:2039:47:1635:-116.039,0,-152.474	1/1:194:0,194:0:0:194:6922:-621.914,-58.3998,0	0/1:212:114,98:114:4092:98:3516:-252.353,0,-304.646	1/1:222:0,222:0:0:222:7941:-713.863,-66.8287,0	0/1:219:121,98:121:4328:98:3512:-250.23,0,-323.771	0/1:19:13,6:13:460:6:216:-14.0482,0,-36.0158	0/1:248:115,133:115:4120:133:4784:-355.163,0,-296.329	1/1:216:0,216:0:0:216:7739:-695.76,-65.0225,0	1/1:277:1,276:1:36:276:9889:-885.201,-79.787,0	0/1:119:52,67:52:1872:67:2404:-180.714,0,-132.937	1/1:67:0,67:0:0:67:2404:-216.531,-20.169,0	1/1:151:0,151:0:0:151:5424:-487.061,-45.4555,0	0/1:178:89,89:89:3188:89:3196:-234.208,0,-233.551	1/1:50:0,50:0:0:50:1792:-161.098,-15.0515,0	0/1:109:49,59:49:1756:59:2124:-158.704,0,-125.6	1/1:77:0,77:0:0:77:2768:-249.056,-23.1793,0	1/1:44:0,44:0:0:44:1584:-142.829,-13.2453,0	0/1:72:32,40:32:1152:40:1432:-107.495,0,-82.316	0/1:85:52,33:52:1872:33:1184:-81.2524,0,-143.172	1/1:129:0,129:0:0:129:4613:-414.905,-38.8329,0	1/1:154:1,153:1:36:153:5496:-491.081,-42.7603,0
chr11	4552277	.	AAC	GAG,AAG	628777	PASS	AB=0.507606,0.489858;ABP=8.75811,13.2286;AC=140,48;AF=0.744681,0.255319;AN=188;AO=17744,5620;CIGAR=1X1M1X,2M1X;DP=23438;DPB=23444;DPRA=0,1.15057;EPP=38429.5,12180.6;EPPR=5.18177;GTI=0;LEN=3,1;MEANALT=2.28723,2.69643;MQM=56.6185,59.8495;MQMR=60;NS=94;NUMALT=2;ODDS=5.88782;PAIRED=0,0;PAIREDR=0;PAO=18,0;PQA=624,0;PQR=0;PRO=0;QA=619589,199473;QR=25;RO=1;RPL=9563,3425;RPP=236.743,587.569;RPPR=5.18177;RPR=8181,2195;RUN=1,1;SAF=9551,3422;SAP=228.695,581.88;SAR=8193,2198;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:165:0,165,0:0:0:165,0:5754,0:-516.424,-49.67,0,-516.424,-49.67,-516.424	1/2:432:0,193,239:0:0:193,239:6705,8511:-1238.34,-693.996,-635.898,-544.691,0,-472.745	1/1:458:0,455,0:0:0:455,0:15855,0:-1422.1,-136.969,0,-1422.1,-136.969,-1422.1	1/2:540:0,264,275:0:0:264,275:9179,9744:-1538.55,-793.9,-714.428,-744.794,0,-662.01	1/1:233:0,232,0:0:0:232,0:8087,0:-726.536,-69.839,0,-726.536,-69.839,-726.536	1/1:136:0,135,0:0:0:135,0:4785,0:-429.642,-40.6391,0,-429.642,-40.6391,-429.642	1/1:240:0,237,0:0:0:237,0:8237,0:-740.638,-71.3441,0,-740.638,-71.3441,-740.638	1/1:527:0,521,2:0:0:521,2:18069,72:-1619.15,-156.837,0,-1613.28,-150.956,-1612.68	1/2:241:1,128,112:1:25:128,112:4436,4008:-684.506,-324.901,-288.317,-358.023,0,-326.256	1/1:246:0,245,0:0:0:245,0:8593,0:-771.615,-73.7524,0,-771.615,-73.7524,-771.615	1/1:153:0,153,0:0:0:153,0:5320,0:-478.069,-46.0576,0,-478.069,-46.0576,-478.069	1/2:222:0,128,94:0:0:128,94:4468,3341:-634.79,-272.574,-234.042,-362.568,0,-334.271	1/2:239:0,123,116:0:0:123,116:4362,4150:-692.824,-338.748,-301.721,-354.432,0,-319.513	1/1:202:0,199,0:0:0:199,0:6906,0:-618.989,-59.905,0,-618.989,-59.905,-618.989	1/1:210:0,208,0:0:0:208,0:7324,0:-657.878,-62.6142,0,-657.878,-62.6142,-657.878	1/1:178:0,176,0:0:0:176,0:6189,0:-556.283,-52.9813,0,-556.283,-52.9813,-556.283	1/2:169:0,79,90:0:0:79,90:2793,3197:-488.049,-260.844,-237.063,-227.559,0,-200.466	1/2:148:0,78,70:0:0:78,70:2759,2507:-428.558,-204.793,-181.313,-224.12,0,-203.048	1/2:94:0,59,34:0:0:59,34:2066,1213:-266.508,-98.8719,-81.1111,-167.631,0,-157.396	1/2:530:0,265,264:0:0:265,264:9291,9361:-1517.8,-762.616,-682.844,-755.174,0,-675.703	1/1:451:0,449,0:0:0:449,0:15708,0:-1410.37,-135.162,0,-1410.37,-135.162,-1410.37	1/2:171:0,61,109:0:0:61,109:2076,3854:-481.218,-313.883,-295.52,-167.32,0,-134.507	1/2:244:0,138,105:0:0:138,105:4865,3752:-701.491,-305.888,-264.346,-395.599,0,-363.991	1/2:218:0,124,93:0:0:124,93:4343,3311:-622.554,-269.688,-232.361,-352.859,0,-324.863	1/1:230:0,228,0:0:0:228,0:7973,0:-715.853,-68.6348,0,-715.853,-68.6348,-715.853	1/2:675:0,331,343:0:0:331,343:11529,12184:-1929.67,-992.819,-893.178,-936.93,0,-833.677	1/1:583:0,582,0:0:0:582,0:20414,0:-1833.53,-175.199,0,-1833.53,-175.199,-1833.53	1/1:118:0,118,0:0:0:118,0:4155,0:-373.718,-35.5215,0,-373.718,-35.5215,-373.718	1/1:564:0,561,2:0:0:561,2:19667,72:-1767.42,-168.878,0,-1761.55,-162.987,-1760.95	1/2:362:0,189,173:0:0:189,173:6586,6130:-1033.93,-499.334,-442.439,-534.59,0,-482.512	1/1:283:0,282,0:0:0:282,0:9909,0:-890.562,-84.8905,0,-890.562,-84.8905,-890.562	1/2:24:0,13,11:0:0:13,11:423,392:-66.4065,-32.3087,-28.3953,-34.4397,0,-31.1284	1/1:55:0,55,0:0:0:55,0:1919,0:-172.652,-16.5567,0,-172.652,-16.5567,-172.652	1/1:14:0,14,0:0:0:14,0:489,0:-44.2461,-4.21442,0,-44.2461,-4.21442,-44.2461	1/1:13:0,13,0:0:0:13,0:460,0:-40.784,-3.91339,0,-40.784,-3.91339,-40.784	1/1:29:0,29,0:0:0:29,0:995,0:-89.659,-8.72987,0,-89.659,-8.72987,-89.659	1/2:462:0,227,235:0:0:227,235:7978,8296:-1324.58,-675.9,-607.566,-649.03,0,-578.288	1/2:303:0,168,134:0:0:168,134:5895,4750:-866.308,-387.002,-336.429,-479.378,0,-439.04	1/1:149:0,149,0:0:0:149,0:5188,0:-465.977,-44.8535,0,-465.977,-44.8535,-465.977	1/2:6:0,3,3:0:0:3,3:105,104:-17.3327,-8.79971,-7.89662,-8.88096,0,-7.97787	1/1:360:0,359,0:0:0:359,0:12542,0:-1127.01,-108.07,0,-1127.01,-108.07,-1127.01	1/1:92:0,91,0:0:0:91,0:3206,0:-287.014,-27.3937,0,-287.014,-27.3937,-287.014	1/1:419:0,418,0:0:0:418,0:14519,0:-1302.64,-125.831,0,-1302.64,-125.831,-1302.64	1/1:198:0,198,0:0:0:198,0:6904,0:-620.46,-59.6039,0,-620.46,-59.6039,-620.46	1/2:148:0,69,78:0:0:69,78:2389,2744:-416.776,-223.395,-202.624,-193.409,0,-169.929	1/2:157:0,80,75:0:0:80,75:2793,2684:-445.984,-218.947,-194.865,-227.109,0,-204.532	1/2:351:0,174,177:0:0:174,177:6011,6268:-997.317,-510.916,-458.537,-486.75,0,-433.468	1/1:553:0,546,4:0:0:546,4:19011,144:-1708.65,-164.362,0,-1696.9,-152.579,-1695.69	1/2:245:0,122,121:0:0:122,121:4263,4278:-694.605,-348.455,-311.729,-346.259,0,-309.834	1/2:357:0,178,179:0:0:178,179:6181,6322:-1017.3,-515.165,-461.582,-502.482,0,-448.597	1/1:251:0,251,0:0:0:251,0:8737,0:-785.522,-75.5585,0,-785.522,-75.5585,-785.522	1/2:23:0,12,11:0:0:12,11:395,384:-63.4239,-31.5833,-27.971,-32.1797,0,-28.8683	1/1:363:0,361,0:0:0:361,0:12715,0:-1140.6,-108.672,0,-1140.6,-108.672,-1140.6	1/2:105:0,44,61:0:0:44,61:1552,2157:-302.347,-176.002,-162.757,-126.698,0,-108.335	1/2:17:0,9,8:0:0:9,8:324,288:-50.2503,-23.8463,-21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chr11	4652526	.	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chr11	4674470	.	G	A	58483.7	PASS	AB=0.533507;ABP=55.3973;AC=46;AF=0.244681;AN=188;AO=2880;CIGAR=1X;DP=11042;DPB=11042;DPRA=1.14638;EPP=3772.7;EPPR=9758.28;GTI=2;LEN=1;MEANALT=1.01887;MQM=59.9969;MQMR=60;NS=94;NUMALT=1;ODDS=1.06561;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103246;QR=291399;RO=8161;RPL=322;RPP=3772.7;RPPR=9758.28;RPR=2558;RUN=1;SAF=2880;SAP=6256.85;SAR=0;SRF=8161;SRP=17724.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:252:124,128:124:4435:128:4567:-335.336,0,-323.461	0/0:209:209,0:209:7452:0:0:0,-62.9153,-670.729	0/1:286:135,151:135:4812:151:5414:-401.292,0,-347.14	0/0:38:37,1:37:1323:1:36:0,-7.84086,-115.773	0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.821	0/0:199:199,0:199:7094:0:0:0,-59.905,-638.522	0/0:146:146,0:146:5219:0:0:0,-43.9504,-469.849	0/1:101:38,63:38:1347:63:2264:-173.618,0,-91.1254	0/0:106:106,0:106:3757:0:0:0,-31.9092,-338.329	0/0:53:53,0:53:1899:0:0:0,-15.9546,-171.187	0/1:82:38,44:38:1364:44:1584:-118.167,0,-98.3763	0/1:93:46,47:46:1628:47:1679:-123.401,0,-118.81	0/0:59:59,0:59:2088:0:0:0,-17.7608,-188.188	0/0:69:69,0:69:2461:0:0:0,-20.7711,-221.743	0/0:58:58,0:58:2079:0:0:0,-17.4597,-187.38	0/1:70:39,31:39:1400:31:1116:-79.6796,0,-105.227	0/1:84:42,42:42:1508:42:1508:-110.728,0,-110.728	0/1:49:21,28:21:756:28:1004:-75.9254,0,-53.6168	0/1:300:140,160:140:5016:160:5743:-426.674,0,-361.277	0/0:212:212,0:212:7580:0:0:0,-63.8184,-682.24	0/1:186:48,138:48:1720:138:4960:-390.555,0,-99.0939	0/1:80:46,33:46:1635:33:1173:-81.8799,0,-123.444	0/1:137:77,60:77:2772:60:2156:-153.066,0,-208.479	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/1:350:178,172:178:6357:172:6161:-449.226,0,-466.86	0/0:208:207,1:207:7397:1:36:0,-59.016,-662.178	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/0:357:357,0:357:12719:0:0:0,-107.468,-1144.54	0/1:124:49,75:49:1756:75:2676:-203.757,0,-120.996	0/0:197:196,1:196:7016:1:32:0,-56.1036,-628.304	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:197:92,105:92:3282:105:3776:-280.734,0,-236.296	0/1:221:107,114:107:3823:114:4100:-302.656,0,-277.739	0/0:90:90,0:90:3221:0:0:0,-27.0927,-290.11	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:258:257,1:257:9194:1:36:0,-74.0675,-823.832	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:211:211,0:211:7556:0:0:0,-63.5173,-680.08	0/0:105:105,0:105:3743:0:0:0,-31.6081,-337.071	0/1:75:38,37:38:1348:37:1328:-97.245,0,-99.043	0/1:155:64,91:64:2283:91:3264:-247.32,0,-159.072	0/1:159:95,64:95:3391:64:2282:-157.777,0,-257.542	0/0:189:189,0:189:6735:0:0:0,-56.8947,-606.228	0/0:156:156,0:156:5563:0:0:0,-46.9607,-500.793	0/1:116:46,70:46:1648:70:2512:-191.412,0,-113.689	0/0:215:214,1:214:7607:1:36:0,-61.1232,-681.074	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/0:295:295,0:295:10539:0:0:0,-88.8038,-948.425	0/1:52:22,30:22:783:30:1080:-81.8597,0,-55.1394	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:152:69,83:69:2439:83:2963:-221.147,0,-174.007	0/1:69:29,40:29:1040:40:1431:-108.316,0,-73.1433	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/1:131:61,70:61:2175:70:2503:-186.086,0,-156.581	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:273:132,141:132:4709:141:5072:-374.44,0,-341.788	0/1:252:107,145:107:3832:145:5199:-392.188,0,-269.217	0/1:99:48,51:48:1716:51:1824:-134.639,0,-124.924	0/0:141:141,0:141:5022:0:0:0,-42.4452,-452.128	0/1:175:78,97:78:2779:97:3480:-260.731,0,-197.671	0/0:140:138,2:138:4872:2:72:0,-35.3075,-431.796	0/1:32:16,16:16:563:16:565:-41.5466,0,-41.3662	0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.747	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/1:23:15,8:15:531:8:288:-19.3437,0,-41.1982	0/0:109:109,0:109:3892:0:0:0,-32.8123,-350.475	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/0:180:180,0:180:6423:0:0:0,-54.1854,-578.16	0/1:223:94,129:94:3371:129:4624:-349.192,0,-236.475	0/0:85:82,3:82:2904:3:108:0,-15.5124,-251.52	0/1:99:50,49:50:1781:49:1764:-129.242,0,-130.769	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:154:84,70:84:2992:70:2497:-178.623,0,-223.154	0/0:149:149,0:149:5344:0:0:0,-44.8535,-481.092	0/0:274:274,0:274:9812:0:0:0,-82.4822,-883.025	0/1:73:36,37:36:1292:37:1332:-98.2072,0,-94.6086	0/0:79:76,3:76:2715:3:108:0,-13.7062,-234.518	0/0:97:97,0:97:3464:0:0:0,-29.1999,-311.973	0/1:137:61,76:61:2183:76:2728:-204.522,0,-155.494	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:79:49,30:49:1756:30:1080:-73.7319,0,-134.543	0/0:69:69,0:69:2466:0:0:0,-20.7711,-222.193	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/1:80:35,45:35:1248:45:1603:-120.476,0,-88.5425	0/1:96:31,65:31:1112:65:2334:-181.42,0,-71.4925	0/0:113:113,0:113:4031:0:0:0,-34.0164,-362.979	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151
chr11	4823701	.	A	G	70531.4	PASS	AB=0.400957;ABP=216.79;AC=135;AF=0.733696;AN=184;AO=2816;CIGAR=1X;DP=4343;DPB=4343;DPRA=11.2879;EPP=1646.73;EPPR=1175.93;GTI=6;LEN=1;MEANALT=1.03448;MQM=59.9918;MQMR=59.9856;NS=92;NUMALT=1;ODDS=0.902081;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100873;QR=54556;RO=1523;RPL=678;RPP=1646.73;RPPR=1175.93;RPR=2138;RUN=1;SAF=2816;SAP=6117.88;SAR=0;SRF=1523;SRP=3310.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:26:17,9:17:612:9:324:-21.6791,0,-47.5867	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	0/1:88:66,22:66:2357:22:779:-43.9414,0,-185.896	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:27:13,14:13:468:14:504:-37.5703,0,-34.3318	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:66:0,66:0:0:66:2366:-213.197,-19.868,0	0/1:99:46,53:46:1656:53:1908:-142.196,0,-119.526	0/1:50:28,22:28:1008:22:792:-56.5542,0,-75.9849	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:49:0,49:0:0:49:1753:-158.053,-14.7505,0	0/1:37:19,18:19:665:18:640:-46.7912,0,-49.0347	0/1:32:22,10:22:792:10:360:-23.1113,0,-61.9727	0/1:50:28,22:28:1004:22:792:-56.5542,0,-75.6244	0/1:72:52,19:52:1857:19:684:-40.2997,0,-145.821	1/1:64:0,63:0:0:63:2268:-204.022,-18.9649,0	0/1:56:37,19:37:1324:19:684:-45.0326,0,-102.604	0/1:33:24,9:24:860:9:324:-19.5719,0,-67.7878	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	1/1:24:0,24:0:0:24:826:-74.6511,-7.22472,0	0/1:133:101,32:101:3617:32:1135:-62.4203,0,-285.697	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	0/1:69:49,20:49:1748:20:720:-44.3577,0,-136.833	1/1:22:1,21:1:36:21:752:-64.408,-3.02439,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:224:105,119:105:3776:119:4284:-318.304,0,-272.607	0/1:39:25,14:25:900:14:504:-33.9579,0,-69.5808	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	.:.:.:.:.:.:.:.	1/1:36:0,36:0:0:36:1281:-115.591,-10.8371,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:29:0,29:0:0:29:1039:-93.8241,-8.72987,0	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	0/1:53:23,30:23:824:30:1080:-81.5587,0,-58.5287	0/1:94:61,33:61:2166:33:1184:-78.5715,0,-166.906	0/1:40:27,13:27:972:13:468:-30.4184,0,-75.7567	1/1:32:0,32:0:0:32:1133:-102.277,-9.63296,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:55:45,10:45:1616:10:360:-16.1877,0,-129.173	1/1:30:0,30:0:0:30:1056:-95.3488,-9.0309,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:55:42,13:42:1508:13:464:-25.5409,0,-119.458	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	0/1:114:53,61:53:1908:61:2192:-163.228,0,-137.68	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:76:45,31:45:1605:31:1116:-77.8734,0,-121.86	0/1:68:48,20:48:1724:20:720:-44.6587,0,-134.975	0/1:23:13,10:13:464:10:360:-25.8206,0,-35.1738	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:87:54,33:54:1940:33:1173:-79.6859,0,-148.669	1/1:42:0,42:0:0:42:1478:-133.31,-12.6433,0	0/1:32:12,20:12:417:20:716:-55.1348,0,-28.2273	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	0/1:6:4,2:4:144:2:57:-3.60713,0,-11.5074	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:80:59,21:59:2120:21:747:-43.4719,0,-166.986	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:36:31,5:31:1101:5:180:-5.71499,0,-88.5613	0/0:6:6,0:6:201:0:0:0,-1.80618,-18.417	0/1:44:33,11:33:1184:11:396:-22.7374,0,-93.623	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:45:0,45:0:0:45:1604:-144.635,-13.5464,0	0/1:71:38,33:38:1368:33:1188:-85.8555,0,-102.048	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:49:0,49:0:0:49:1734:-156.341,-14.7505,0	0/1:188:90,96:90:3225:96:3444:-253.894,0,-234.192	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:90:42,48:42:1512:48:1720:-127.993,0,-109.282	1/1:94:0,94:0:0:94:3375:-303.965,-28.2968,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:109:47,62:47:1692:62:2217:-166.98,0,-119.755	0/1:113:80,33:80:2861:33:1188:-73.2122,0,-223.709	1/1:37:0,37:0:0:37:1329:-119.912,-11.1381,0	1/1:105:0,105:0:0:105:3757:-338.328,-31.6082,0
chr11	4827417	.	C	T	108556	PASS	AB=0.532007;ABP=31.6457;AC=143;AF=0.760638;AN=188;AO=5036;CIGAR=1X;DP=6552;DPB=6552;DPRA=0;EPP=10457.5;EPPR=3161.62;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9347;MQMR=59.9868;NS=94;NUMALT=1;ODDS=0.85278;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179710;QR=54155;RO=1514;RPL=4980;RPP=10457.5;RPPR=3178.67;RPR=56;RUN=1;SAF=0;SAP=10938.5;SAR=5036;SRF=2;SRP=3273.27;SRR=1512;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:101:42,59:42:1499:59:2097:-158.586,0,-104.8	1/1:143:0,143:0:0:143:5092:-458.419,-43.0473,0	0/1:236:104,132:104:3715:132:4682:-350.499,0,-263.509	1/1:58:0,58:0:0:58:2068:-186.39,-17.4597,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:99:0,99:0:0:99:3529:-317.817,-29.802,0	1/1:123:0,123:0:0:123:4404:-396.515,-37.0267,0	0/1:75:38,37:38:1360:37:1328:-97.245,0,-100.123	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:49:20,29:20:720:29:1040:-79.1639,0,-50.3783	0/1:39:17,22:17:604:22:788:-59.5046,0,-42.9504	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:41:0,41:0:0:41:1467:-132.325,-12.3422,0	0/1:42:24,18:24:864:18:644:-45.6473,0,-65.4393	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:104:52,52:52:1864:52:1856:-136.013,0,-136.732	1/1:108:0,108:0:0:108:3872:-348.674,-32.5112,0	0/1:85:60,25:60:2152:25:888:-54.6515,0,-168.23	0/1:57:23,34:23:824:34:1216:-92.5855,0,-57.3246	0/1:78:30,48:30:1072:48:1705:-130.254,0,-73.3121	1/1:86:0,86:0:0:86:3068:-276.321,-25.8886,0	0/1:251:134,117:134:4812:117:4192:-301.9,0,-357.675	1/1:120:0,120:0:0:120:4281:-385.467,-36.1236,0	1/1:23:0,23:0:0:23:824:-74.4695,-6.92369,0	1/1:161:0,161:0:0:161:5742:-516.825,-48.4658,0	0/1:97:48,49:48:1716:49:1715:-125.431,0,-125.526	1/1:126:0,126:0:0:126:4480:-403.369,-37.9298,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:142:67,75:67:2400:75:2688:-199.418,0,-173.511	0/1:139:57,82:57:2026:82:2929:-222,0,-140.768	1/1:39:0,39:0:0:39:1385:-124.948,-11.7402,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:121:0,121:0:0:121:4329:-389.784,-36.4246,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:115:0,115:0:0:115:4104:-369.547,-34.6185,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:48:17,31:17:604:31:1104:-85.2147,0,-40.2412	0/1:71:26,45:26:904:45:1616:-124.349,0,-60.2988	0/1:60:38,22:38:1364:22:777:-52.1886,0,-104.999	1/1:148:0,148:0:0:148:5308:-477.849,-44.5524,0	1/1:91:0,91:0:0:91:3254:-292.807,-27.3937,0	0/1:69:33,36:33:1188:36:1296:-96.1729,0,-86.4575	1/1:110:0,110:0:0:110:3932:-354.073,-33.1133,0	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:114:0,114:0:0:114:4059:-365.49,-34.3174,0	1/1:29:1,28:1:36:28:1004:-87.0776,-5.1316,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:81:37,44:37:1324:44:1580:-118.108,0,-95.0787	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:12:4,8:4:144:8:284:-22.291,0,-9.70126	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:88:39,49:39:1400:49:1749:-131.201,0,-99.8085	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:214:85,129:85:3040:129:4616:-351.182,0,-209.41	0/1:167:83,84:83:2968:84:2996:-219.601,0,-217.081	0/1:47:29,18:29:1036:18:644:-44.1422,0,-79.4055	1/1:60:0,60:0:0:60:2114:-190.523,-18.0618,0	0/1:112:46,66:46:1656:66:2356:-178.584,0,-115.613	1/1:101:5,96:5:180:96:3433:-292.627,-13.852,0	0/1:9:6,3:6:212:3:108:-7.3659,0,-16.7155	1/1:42:0,42:0:0:42:1504:-135.654,-12.6433,0	1/1:52:0,52:0:0:52:1845:-166.264,-15.6536,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:63:0,63:0:0:63:2253:-203.018,-18.9649,0	1/1:54:0,54:0:0:54:1936:-174.503,-16.2556,0	1/1:107:2,104:2:72:104:3713:-327.529,-25.4323,0	0/1:141:54,87:54:1913:87:3079:-234.89,0,-130	1/1:98:0,98:0:0:98:3520:-317.009,-29.5009,0	0/1:79:45,34:45:1608:34:1208:-85.2447,0,-121.229	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:85:39,46:39:1396:46:1636:-121.941,0,-100.352	1/1:85:1,84:1:36:84:3012:-267.713,-21.9893,0	1/1:149:0,149:0:0:149:5274:-474.799,-44.8535,0	0/1:64:32,32:32:1152:32:1152:-84.7242,0,-84.7242	1/1:37:0,37:0:0:37:1316:-118.739,-11.1381,0	1/1:57:0,57:0:0:57:2032:-183.15,-17.1587,0	0/1:119:55,64:55:1959:64:2279:-169.539,0,-140.762	1/1:18:0,18:0:0:18:632:-57.2062,-5.41854,0	0/1:56:30,26:30:1067:26:928:-66.979,0,-79.4835	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	1/1:23:0,23:0:0:23:822:-74.3027,-6.92369,0	0/1:53:19,33:19:684:33:1153:-88.0461,0,-45.8769	0/1:47:31,16:31:1112:16:572:-37.665,0,-86.2429	1/1:86:0,86:0:0:86:3065:-276.007,-25.8886,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0
chr11	4830956	.	A	G	24899.5	PASS	AB=0.505109;ABP=3.67594;AC=47;AF=0.25;AN=188;AO=1501;CIGAR=1X;DP=6514;DPB=6514;DPRA=0.985274;EPP=3236.38;EPPR=10851.7;GTI=1;LEN=1;MEANALT=1.01887;MQM=59.9654;MQMR=59.9966;NS=94;NUMALT=1;ODDS=1.18605;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53458;QR=175865;RO=5012;RPL=0;RPP=3262.39;RPPR=10886.4;RPR=1501;RUN=1;SAF=1498;SAP=3236.38;SAR=3;SRF=5008;SRP=10851.7;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1957:0:0:0,-16.5566,-176.404	0/1:59:40,19:40:1364:19:684:-44.1296,0,-105.288	0/0:104:104,0:104:3559:0:0:0,-31.3071,-320.512	0/1:127:62,65:62:2171:65:2317:-170.558,0,-157.421	0/0:23:23,0:23:779:0:0:0,-6.92369,-70.4183	0/0:31:31,0:31:1071:0:0:0,-9.33193,-96.6917	0/0:95:95,0:95:3374:0:0:0,-28.5978,-303.874	0/0:104:104,0:104:3630:0:0:0,-31.3071,-326.902	0/1:94:42,52:42:1489:52:1853:-138.752,0,-106.006	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/0:89:89,0:89:3165:0:0:0,-26.7917,-285.074	0/1:123:56,67:56:1978:67:2378:-177.248,0,-141.264	0/1:78:36,42:36:1277:42:1512:-112.894,0,-91.7508	0/0:79:79,0:79:2799:0:0:0,-23.7814,-252.146	0/0:80:80,0:80:2793:0:0:0,-24.0824,-251.605	0/0:64:64,0:64:2266:0:0:0,-19.2659,-204.199	0/1:41:17,24:17:608:24:860:-65.3796,0,-42.7098	0/1:34:17,17:17:612:17:604:-44.4556,0,-45.1784	0/1:56:20,36:20:666:36:1296:-100.086,0,-43.39	0/1:139:84,55:84:2899:55:1976:-136.271,0,-219.297	0/0:92:92,0:92:3232:0:0:0,-27.6948,-291.094	0/1:44:11,33:11:381:33:1176:-92.9024,0,-21.3753	0/1:85:40,45:40:1406:45:1593:-118.071,0,-101.246	0/1:16:10,6:10:330:6:216:-14.974,0,-25.2009	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/1:91:53,38:53:1836:38:1364:-95.667,0,-138.119	0/0:193:193,0:193:6713:0:0:0,-58.0988,-604.247	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:157:156,1:156:5528:1:36:0,-43.6634,-494.046	0/1:66:34,32:34:1164:32:1148:-83.7619,0,-85.1874	0/0:84:84,0:84:2964:0:0:0,-25.2865,-266.988	0/1:16:7,9:7:252:9:301:-22.5972,0,-18.2125	0/0:15:15,0:15:495:0:0:0,-4.51545,-44.8611	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/1:147:67,80:67:2385:80:2857:-213.115,0,-170.655	0/1:46:20,26:20:720:26:932:-70.3515,0,-51.2814	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:88:88,0:88:3103:0:0:0,-26.4906,-279.495	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/0:112:112,0:112:3899:0:0:0,-33.7154,-351.101	0/0:63:63,0:63:2226:0:0:0,-18.9649,-200.601	0/1:56:34,22:34:1179:22:787:-54.2105,0,-89.5507	0/1:97:37,60:37:1328:60:2156:-165.107,0,-90.6223	0/1:99:46,53:46:1607:53:1860:-137.741,0,-115.111	0/0:88:87,1:87:3044:1:32:0,-23.2913,-270.988	0/0:56:56,0:56:1971:0:0:0,-16.8577,-177.659	0/1:60:38,22:38:1345:22:777:-52.1886,0,-103.286	0/0:70:70,0:70:2455:0:0:0,-21.0721,-221.201	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:80:80,0:80:2770:0:0:0,-24.0824,-249.536	0/0:52:52,0:52:1830:0:0:0,-15.6536,-164.977	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:107:60,47:60:2136:47:1640:-115.673,0,-160.298	0/1:57:30,27:30:1016:27:955:-69.1053,0,-74.5802	0/1:9:7,2:7:237:2:72:-4.12745,0,-18.9498	0/1:8:3,5:3:93:5:165:-12.7654,0,-6.26846	0/0:58:58,0:58:2058:0:0:0,-17.4597,-185.488	0/1:98:41,57:41:1461:57:2052:-155.45,0,-102.283	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:82:54,28:54:1929:28:981:-63.916,0,-149.2	0/1:110:46,64:46:1595:64:2277:-172.077,0,-110.72	0/1:50:21,29:21:725:29:1010:-76.1555,0,-50.5162	0/0:51:51,0:51:1783:0:0:0,-15.3525,-160.747	0/1:86:41,45:41:1416:45:1601:-118.49,0,-101.839	0/0:125:121,4:121:4250:4:133:0,-25.3312,-370.378	0/1:87:45,42:45:1605:42:1508:-109.825,0,-118.549	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/0:46:45,1:45:1578:1:36:0,-10.2491,-138.708	0/1:24:7,17:7:248:17:580:-45.2946,0,-15.4395	0/0:95:95,0:95:3231:0:0:0,-28.5978,-291.005	0/0:76:75,1:75:2627:1:34:0,-19.4794,-233.276	0/0:183:183,0:183:6451:0:0:0,-55.0885,-580.676	0/1:66:44,22:44:1527:22:792:-51.7377,0,-117.848	0/0:65:64,1:64:2251:1:36:0,-15.9687,-199.25	0/1:76:40,36:40:1425:36:1281:-92.713,0,-105.667	0/1:17:9,8:9:275:8:288:-21.1499,0,-19.9294	0/1:56:35,20:35:1192:20:716:-47.8513,0,-90.658	0/0:90:90,0:90:3125:0:0:0,-27.0927,-281.471	0/0:180:180,0:180:6362:0:0:0,-54.1854,-572.669	0/1:42:21,21:21:756:21:752:-55.363,0,-55.724	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/0:41:40,1:40:1402:1:36:0,-8.74395,-122.875	0/1:114:66,48:66:2312:48:1705:-119.416,0,-174.017	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:59:25,34:25:892:34:1224:-92.7063,0,-62.8389	0/0:63:63,0:63:2219:0:0:0,-18.9649,-199.97	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/1:139:66,73:66:2330:73:2605:-192.854,0,-168.114	0/1:64:17,47:17:597:47:1688:-132.941,0,-34.7902	0/0:116:116,0:116:4043:0:0:0,-34.9195,-364.055	0/0:108:107,1:107:3776:1:36:0,-28.913,-336.438
chr11	4830962	.	T	G	103954	PASS	AB=0.492938;ABP=4.2677;AC=141;AF=0.75;AN=188;AO=4920;CIGAR=1X;DP=6409;DPB=6409;DPRA=23.1993;EPP=10651.9;EPPR=3208.16;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9978;MQMR=59.9772;NS=94;NUMALT=1;ODDS=0.830438;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175300;QR=53210;RO=1488;RPL=0;RPP=10686.7;RPPR=3234.16;RPR=4920;RUN=1;SAF=4916;SAP=10651.9;SAR=4;SRF=1485;SRP=3208.16;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1955:-176.225,-16.5567,0	0/1:58:19,39:19:684:39:1373:-106.407,0,-44.4306	1/1:102:0,102:0:0:102:3617:-325.736,-30.7051,0	0/1:122:62,60:62:2216:60:2140:-156.142,0,-162.979	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	1/1:103:0,103:0:0:103:3664:-329.963,-31.0061,0	0/1:92:51,41:51:1836:41:1464:-104.361,0,-137.826	1/1:48:0,48:0:0:48:1693:-152.654,-14.4494,0	1/1:89:0,89:0:0:89:3174:-285.884,-26.7917,0	0/1:127:69,58:69:2472:58:2063:-147.71,0,-184.503	0/1:80:42,38:42:1496:38:1362:-98.798,0,-110.852	1/1:77:0,77:0:0:77:2728:-245.763,-23.1793,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	1/1:62:0,62:0:0:62:2198:-198.085,-18.6639,0	0/1:40:23,17:23:819:17:612:-43.3722,0,-61.9904	0/1:33:17,16:17:608:16:572:-41.8794,0,-45.118	0/1:56:36,20:36:1296:20:716:-47.91,0,-100.086	0/1:139:55,84:55:1961:84:3000:-228.389,0,-134.92	1/1:89:0,89:0:0:89:3152:-283.904,-26.7917,0	0/1:44:34,10:34:1190:10:352:-18.7729,0,-94.1557	0/1:85:43,42:43:1540:42:1500:-109.706,0,-113.306	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:86:35,51:35:1252:51:1813:-137.562,0,-87.0965	1/1:189:0,189:0:0:189:6744:-607.036,-56.8947,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:157:1,156:1:36:156:5527:-493.958,-43.6634,0	0/1:69:32,37:32:1148:37:1313:-97.6986,0,-82.8588	1/1:83:0,83:0:0:83:2948:-265.555,-24.9855,0	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:148:79,69:79:2836:69:2469:-177.91,0,-210.926	0/1:44:25,19:25:883:19:680:-48.2838,0,-66.5421	1/1:49:0,49:0:0:49:1726:-155.623,-14.7505,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:86:0,86:0:0:86:3068:-276.348,-25.8886,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:109:0,109:0:0:109:3890:-350.295,-32.8123,0	1/1:63:0,63:0:0:63:2229:-200.875,-18.9649,0	0/1:54:21,33:21:747:33:1188:-90.973,0,-51.2987	0/1:96:60,36:60:2148:36:1280:-86.6044,0,-164.689	0/1:96:52,44:52:1860:44:1576:-113.233,0,-137.843	1/1:86:1,85:1:36:85:2994:-266.093,-22.2903,0	1/1:54:0,54:0:0:54:1915:-172.627,-16.2556,0	0/1:61:23,38:23:824:38:1360:-104.338,0,-56.1205	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:82:0,82:0:0:82:2924:-263.396,-24.6845,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:106:46,59:46:1637:59:2100:-157.4,0,-115.747	0/1:58:27,31:27:964:31:1100:-81.8505,0,-69.6171	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:57:0,57:0:0:57:2032:-183.153,-17.1587,0	0/1:95:58,37:58:2066:37:1324:-90.8642,0,-157.612	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:82:28,54:28:1004:54:1936:-149.832,0,-65.9914	0/1:105:62,43:62:2232:43:1536:-106.925,0,-169.535	0/1:52:30,22:30:1063:22:784:-55.2304,0,-80.3273	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	0/1:86:45,41:45:1608:41:1464:-106.167,0,-119.122	1/1:120:4,116:4:144:116:4156:-360.909,-22.81,0	0/1:87:41,46:41:1476:46:1652:-122.779,0,-106.947	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:24:16,8:16:568:8:284:-18.6786,0,-44.2271	1/1:92:0,92:0:0:92:3248:-292.542,-27.6948,0	1/1:73:1,72:1:36:72:2549:-226.062,-18.3769,0	1/1:183:1,182:1:36:182:6452:-577.168,-51.4902,0	0/1:64:21,43:21:756:43:1521:-117.915,0,-49.1013	1/1:63:1,62:1:36:62:2208:-195.387,-15.3666,0	0/1:75:36,39:36:1296:39:1392:-103.001,0,-94.3667	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:52:21,31:21:748:31:1100:-83.6567,0,-51.9917	1/1:88:0,88:0:0:88:3133:-282.197,-26.4906,0	1/1:173:0,173:0:0:173:6183:-556.568,-52.0782,0	0/1:40:21,19:21:752:19:680:-49.488,0,-55.9651	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:112:49,63:49:1764:63:2244:-168.507,0,-125.328	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:56:34,22:34:1215:22:770:-52.7617,0,-92.7981	1/1:63:0,63:0:0:63:2223:-200.335,-18.9649,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:139:73,66:73:2590:66:2360:-170.816,0,-191.506	0/1:64:47,17:47:1679:17:608:-35.7861,0,-132.13	1/1:112:1,111:1:36:111:3968:-353.713,-30.1171,0	1/1:103:1,102:1:36:102:3657:-325.734,-27.4078,0
chr11	4832702	.	G	A	55390.6	PASS	AB=0.515625;ABP=13.0534;AC=43;AF=0.231183;AN=186;AO=2450;CIGAR=1X;DP=8941;DPB=8941;DPRA=1.28078;EPP=5314.44;EPPR=14072;GTI=4;LEN=1;MEANALT=1.10204;MQM=59.9637;MQMR=59.9877;NS=93;NUMALT=1;ODDS=1.4199;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87200;QR=225075;RO=6479;RPL=1495;RPP=261.46;RPPR=1257.91;RPR=955;RUN=1;SAF=1496;SAP=263.378;SAR=954;SRF=4207;SRP=1257.91;SRR=2272;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:912:0:0:0,-8.12781,-82.3842	0/1:101:55,46:55:1917:46:1648:-118.205,0,-142.399	0/0:112:112,0:112:3906:0:0:0,-33.7154,-351.737	0/1:248:144,104:144:5078:104:3684:-257.102,0,-382.517	0/0:28:27,1:27:948:1:36:0,-4.83056,-82.0364	0/0:25:24,1:24:822:1:36:0,-3.92747,-70.6924	0/0:170:170,0:170:5978:0:0:0,-51.1751,-538.136	0/0:91:91,0:91:3154:0:0:0,-27.3937,-284.087	0/1:72:29,43:29:993:43:1512:-114.696,0,-68.0003	0/0:166:166,0:166:5877:0:0:0,-49.971,-529.044	0/0:108:108,0:108:3705:0:0:0,-32.5112,-333.66	0/1:85:34,51:34:1137:51:1823:-138.763,0,-77.0393	0/1:65:32,33:32:1081:33:1158:-84.9581,0,-78.0254	0/0:64:64,0:64:2160:0:0:0,-19.2659,-194.666	0/0:99:99,0:99:3425:0:0:0,-29.802,-308.469	0/0:38:38,0:38:1251:0:0:0,-11.4391,-112.878	0/1:76:34,42:34:1143:42:1504:-112.776,0,-80.2904	0/1:58:29,29:29:994:29:1036:-76.0942,0,-72.308	0/1:41:22,19:22:703:19:680:-49.1869,0,-51.2304	0/1:234:107,127:107:3753:127:4532:-337.607,0,-267.534	0/0:90:90,0:90:3163:0:0:0,-27.0927,-284.888	0/1:134:39,95:39:1352:95:3408:-266.596,0,-81.6373	0/1:146:77,69:77:2711:69:2440:-175.906,0,-200.285	0/1:67:49,18:49:1737:18:640:-37.7603,0,-136.444	0/0:27:27,0:27:941:0:0:0,-8.12781,-85.0017	0/1:256:111,145:111:3851:145:5168:-387.341,0,-269.726	0/0:67:67,0:67:2340:0:0:0,-20.169,-210.859	0/0:30:30,0:30:974:0:0:0,-9.0309,-87.9558	0/0:224:223,1:223:7821:1:36:0,-63.8324,-700.337	0/1:106:54,52:54:1848:52:1849:-134.779,0,-134.683	0/0:110:110,0:110:3893:0:0:0,-33.1133,-350.567	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:367:191,176:191:6461:176:6279:-454.728,0,-471.129	0/1:106:39,66:39:1333:66:2304:-175.761,0,-88.4023	0/0:77:77,0:77:2522:0:0:0,-23.1793,-227.231	.:.:.:.:.:.:.:.	0/0:53:53,0:53:1808:0:0:0,-15.9546,-162.997	0/0:28:28,0:28:945:0:0:0,-8.42884,-85.3564	0/0:62:59,1:59:2074:1:36:0,-14.7751,-183.42	0/0:150:150,0:150:5187:0:0:0,-45.1545,-466.983	0/1:108:48,60:48:1652:60:2139:-160.266,0,-116.453	0/1:147:65,82:65:2243:82:2912:-218.063,0,-157.879	0/1:66:34,32:34:1199:32:1132:-82.3206,0,-88.3468	0/0:162:162,0:162:5676:0:0:0,-48.7669,-510.969	0/0:168:168,0:168:5931:0:0:0,-50.573,-533.901	0/1:185:80,105:80:2833:105:3764:-283.268,0,-199.518	0/0:195:194,0:194:6753:0:0:0,-58.3998,-607.636	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:70:70,0:70:2449:0:0:0,-21.0721,-220.665	0/0:64:64,0:64:2253:0:0:0,-19.2659,-203.015	0/1:5:2,3:2:72:3:106:-8.38395,0,-5.33157	0/1:60:32,28:32:1127:28:993:-71.6228,0,-83.6756	0/1:99:54,45:54:1907:45:1616:-115.928,0,-142.105	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/1:20:16,4:16:560:4:140:-6.92398,0,-44.7081	0/0:48:48,0:48:1678:0:0:0,-14.4494,-151.302	0/1:152:68,84:68:2313:84:2970:-221.778,0,-162.674	0/1:10:4,6:4:135:6:216:-16.7802,0,-9.47221	0/1:187:95,92:95:3333:92:3268:-237.491,0,-243.899	0/1:186:96,90:96:3363:90:3195:-231.777,0,-246.895	0/1:61:36,25:36:1231:25:896:-62.5975,0,-92.7248	0/0:92:92,0:92:3236:0:0:0,-27.6948,-291.464	0/1:178:99,77:99:3470:77:2756:-195.009,0,-259.242	0/0:126:122,3:122:4315:3:108:0,-27.9134,-378.456	0/1:30:8,22:8:284:22:792:-62.5748,0,-16.8725	0/0:55:54,1:54:1893:1:36:0,-12.9584,-167.048	0/0:108:108,0:108:3668:0:0:0,-32.5112,-330.329	0/1:30:16,14:16:572:14:500:-36.3053,0,-42.7825	0/0:38:37,0:37:1265:0:0:0,-11.1381,-113.922	0/0:51:51,0:51:1765:0:0:0,-15.3525,-159.131	0/0:86:86,0:86:3032:0:0:0,-25.8886,-273.111	0/1:136:80,56:80:2837:56:2000:-139.334,0,-214.628	0/0:122:122,0:122:4269:0:0:0,-36.7257,-384.394	0/1:80:41,39:41:1453:39:1392:-101.497,0,-106.982	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:47:24,23:24:833:23:812:-59.2525,0,-61.1363	0/0:54:52,0:52:1803:0:0:0,-15.6536,-162.237	0/0:231:231,0:231:8187:0:0:0,-69.5379,-736.85	0/1:149:67,82:67:2318:82:2924:-218.542,0,-164.026	0/0:124:124,0:124:4306:0:0:0,-37.3277,-387.727	0/0:116:116,0:116:3947:0:0:0,-34.9195,-355.067	0/1:269:128,141:128:4444:141:5012:-370.254,0,-319.161	0/0:45:44,0:44:1519:0:0:0,-13.2453,-136.753	0/1:110:53,57:53:1788:57:1999:-147.068,0,-128.084	0/0:77:77,0:77:2494:0:0:0,-23.1793,-224.713	0/0:37:37,0:37:1257:0:0:0,-11.1381,-113.425	0/1:68:23,45:23:769:45:1612:-124.9,0,-49.05	0/1:170:65,105:65:2245:105:3741:-285.716,0,-151.139	0/0:103:102,0:102:3576:0:0:0,-30.7051,-321.84	0/0:170:170,0:170:5932:0:0:0,-51.1751,-534.003
chr11	4868528	.	CCC	CCT,TCT	578904	PASS	AB=0.493805,0.503555;ABP=6.29287,4.09096;AC=143,45;AF=0.760638,0.239362;AN=188;AO=16291,4980;CIGAR=2M1X,1X1M1X;DP=21312;DPB=21313.7;DPRA=0,1.15458;EPP=35343.7,10816.9;EPPR=22.5536;GTI=1;LEN=1,3;MEANALT=1.92553,2.44643;MQM=56.7768,51.9197;MQMR=60;NS=94;NUMALT=2;ODDS=0.56793;PAIRED=0,0;PAIREDR=0;PAO=1.5,2.5;PQA=52,88;PQR=0;PRO=1;QA=577212,173794;QR=320;RO=9;RPL=8193,2475;RPP=4.21327,3.40273;RPPR=14.8328;RPR=8098,2505;RUN=1,1;SAF=8195,2475;SAP=4.3167,3.40273;SAR=8096,2505;SRF=1;SRP=14.8328;SRR=8;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:145:0,145,0:0:0:145,0:5117,0:-458.356,-43.6494,0,-458.356,-43.6494,-458.356	1/2:233:0,110,122:0:0:110,122:3922,4266:-662.846,-343.851,-310.738,-318.988,0,-282.262	1/1:426:0,425,0:0:0:425,0:15104,0:-1354.63,-127.938,0,-1354.63,-127.938,-1354.63	1/2:533:0,278,254:0:0:278,254:9816,8840:-1512.24,-713.516,-629.83,-798.738,0,-722.276	1/1:105:0,101,4:0:0:101,4:3559,144:-319.608,-30.404,0,-307.864,-18.3009,-306.66	1/1:64:0,64,0:0:0:64,0:2286,0:-205.197,-19.2659,0,-205.197,-19.2659,-205.197	1/1:366:0,365,1:0:0:365,1:12983,36:-1165.97,-109.876,0,-1163.06,-106.61,-1162.76	1/1:315:0,315,0:0:0:315,0:11178,0:-1003.57,-94.8245,0,-1003.57,-94.8245,-1003.57	1/2:316:0,153,163:0:0:153,163:5349,5650:-890.585,-456.788,-410.731,-434.144,0,-385.076	1/1:240:0,240,0:0:0:240,0:8524,0:-766.332,-72.2472,0,-766.332,-72.2472,-766.332	1/1:113:0,113,0:0:0:113,0:3972,0:-357.285,-34.0164,0,-357.285,-34.0164,-357.285	1/2:226:0,116,108:0:0:116,108:4092,3798:-639.469,-307.889,-272.969,-331.678,0,-299.167	1/2:198:0,111,86:0:0:111,86:3938,2998:-562.424,-242.492,-209.078,-320.05,0,-294.161	1/1:155:0,155,0:0:0:155,0:5509,0:-495.258,-46.6597,0,-495.258,-46.6597,-495.258	1/1:178:0,178,0:0:0:178,0:6352,0:-571.172,-53.5833,0,-571.172,-53.5833,-571.172	1/1:164:0,164,0:0:0:164,0:5795,0:-520.765,-49.3689,0,-520.765,-49.3689,-520.765	1/2:90:0,45,44:0:0:45,44:1608,1543:-255.564,-125.03,-111.484,-130.557,0,-117.312	1/2:96:0,47,49:0:0:47,49:1673,1726:-275.542,-139.593,-125.445,-136.301,0,-121.551	1/2:68:0,35,33:0:0:35,33:1236,1160:-194.762,-94.4139,-83.8779,-100.699,0,-90.7647	1/2:642:0,329,313:0:0:329,313:11701,10951:-1836.94,-885.715,-786.676,-951.572,0,-857.35	1/1:578:0,576,2:0:0:576,2:20351,65:-1828.33,-173.393,0,-1823.1,-167.843,-1822.5	1/2:163:0,44,117:0:0:44,117:1556,4109:-458.868,-333.191,-319.946,-125.728,0,-90.5071	1/2:330:0,162,168:0:0:162,168:5779,5855:-943.08,-472.639,-423.873,-470.791,0,-420.218	1/2:264:0,141,123:0:0:141,123:4968,4267:-749.477,-345.549,-303.104,-404.276,0,-367.25	1/1:239:0,239,0:0:0:239,0:8492,0:-762.699,-71.9462,0,-762.699,-71.9462,-762.699	1/2:548:0,275,271:0:0:275,271:9760,9438:-1556.62,-762.675,-679.891,-793.931,0,-712.352	1/1:334:0,332,1:0:0:332,1:11705,34:-1051.25,-99.942,0,-1048.51,-97.209,-1048.21	1/1:76:0,76,0:0:0:76,0:2689,0:-242.07,-22.8783,0,-242.07,-22.8783,-242.07	1/1:564:1,561,1:1:36:561,1:19921,36:-1787.71,-165.927,0,-1785.11,-165.956,-1787.74	1/2:312:0,154,158:0:0:154,158:5443,5579:-893.364,-452.122,-405.763,-441.594,0,-394.031	1/1:336:0,335,0:0:0:335,0:11865,0:-1066.31,-100.845,0,-1066.31,-100.845,-1066.31	1/2:13:0,4,9:0:0:4,9:144,324:-38.4419,-26.6964,-25.4923,-12.1048,0,-9.39551	1/1:16:0,16,0:0:0:16,0:572,0:-51.7857,-4.81648,0,-51.7857,-4.81648,-51.7857	1/1:9:0,9,0:0:0:9,0:301,0:-27.363,-2.70927,0,-27.363,-2.70927,-27.363	1/1:6:0,6,0:0:0:6,0:203,0:-18.5896,-1.80618,0,-18.5896,-1.80618,-18.5896	1/1:15:0,15,0:0:0:15,0:522,0:-46.1373,-4.51545,0,-46.1373,-4.51545,-46.1373	1/2:372:0,203,168:0:0:203,168:7258,5890:-1066.54,-475.252,-414.143,-591.269,0,-540.696	1/2:258:0,127,130:0:0:127,130:4485,4477:-726.388,-361.721,-323.49,-364.706,0,-325.572	1/1:102:0,101,1:0:0:101,1:3576,36:-320.862,-30.404,0,-317.942,-27.3353,-317.641	1/2:5:0,4,1:0:0:4,1:136,36:-14.2981,-3.29553,-2.09141,-11.3582,0,-11.0572	1/1:419:1,418,0:1:36:418,0:14837,0:-1329.74,-122.533,0,-1330.04,-125.831,-1332.98	1/1:59:0,59,0:0:0:59,0:2087,0:-187.672,-17.7608,0,-187.672,-17.7608,-187.672	1/1:422:0,422,0:0:0:422,0:14991,0:-1346.47,-127.035,0,-1346.47,-127.035,-1346.47	1/1:153:1,152,0:1:34:152,0:5365,0:-479.132,-42.6587,0,-479.433,-45.7566,-482.191	1/2:152:0,74,78:0:0:74,78:2613,2644:-426.205,-213.655,-191.379,-212.894,0,-189.414	1/2:260:1,126,133:1:36:126,133:4466,4640:-734.704,-371.682,-336.69,-360.376,0,-323.276	1/2:310:0,168,140:0:0:168,140:5947,4850:-875.416,-392.372,-341.799,-483.097,0,-440.952	1/1:342:0,339,3:0:0:339,3:12106,106:-1087.79,-102.049,0,-1079.22,-93.1288,-1078.31	1/1:215:0,215,0:0:0:215,0:7614,0:-684.574,-64.7215,0,-684.574,-64.7215,-684.574	1/2:273:0,110,162:0:0:110,162:3876,5707:-776.042,-461.172,-428.058,-315.013,0,-266.246	1/1:266:0,266,0:0:0:266,0:9335,0:-839.621,-80.074,0,-839.621,-80.074,-839.621	1/2:12:0,8,4:0:0:8,4:284,142:-35.0049,-11.8765,-9.46829,-23.4823,0,-22.2782	1/1:351:0,350,1:0:0:350,1:12383,36:-1112.45,-105.361,0,-1109.51,-102.067,-1109.21	1/1:158:0,158,0:0:0:158,0:5600,0:-503.888,-47.5627,0,-503.888,-47.5627,-503.888	1/2:14:0,6,8:0:0:6,8:212,279:-40.1617,-22.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chr11	5031617	.	C	T	111517	PASS	AB=0.474406;ABP=21.6842;AC=145;AF=0.771277;AN=188;AO=5420;CIGAR=1X;DP=7149;DPB=7149;DPRA=0;EPP=11772.4;EPPR=3753.14;GTI=0;LEN=1;MEANALT=1.02128;MQM=55.0395;MQMR=59.9085;NS=94;NUMALT=1;ODDS=1.1733;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190248;QR=61734;RO=1727;RPL=0;RPP=11772.4;RPPR=3753.14;RPR=5420;RUN=1;SAF=0;SAP=11772.4;SAR=5420;SRF=0;SRP=3753.14;SRR=1727;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41:0:0:41:1383:-124.255,-12.3422,0	0/1:43:30,13:30:1072:13:464:-29.0761,0,-83.8482	1/1:122:0,122:0:0:122:4289:-384.991,-36.7257,0	0/1:137:64,73:64:2300:73:2569:-190.105,0,-165.95	1/1:47:0,47:0:0:47:1652:-148.036,-14.1484,0	1/1:52:0,52:0:0:52:1826:-163.776,-15.6536,0	1/1:121:0,121:0:0:121:4213:-378.472,-36.4246,0	1/1:104:0,104:0:0:104:3635:-326.499,-31.3071,0	0/1:102:61,41:61:2188:41:1440:-98.9572,0,-166.479	1/1:59:0,59:0:0:59:2072:-186.584,-17.7608,0	1/1:44:0,44:0:0:44:1568:-141.167,-13.2453,0	0/1:70:38,32:38:1352:32:1131:-80.6359,0,-100.908	0/1:64:30,34:30:1080:34:1208:-89.5261,0,-78.183	1/1:52:0,52:0:0:52:1836:-164.767,-15.6536,0	1/1:43:0,43:0:0:43:1513:-136.356,-12.9443,0	1/1:53:0,53:0:0:53:1880:-169.079,-15.9546,0	1/1:16:0,16:0:0:16:563:-50.7863,-4.81648,0	0/1:33:17,16:17:608:16:560:-40.688,0,-45.118	0/1:28:11,17:11:396:17:604:-46.0981,0,-27.4837	0/1:226:105,121:105:3772:121:4282:-317.289,0,-271.645	1/1:87:0,86:0:0:86:2944:-264.419,-25.8886,0	0/1:80:57,23:57:2044:23:802:-48.1753,0,-160.149	0/1:128:70,58:70:2505:58:2047:-145.835,0,-187.134	0/1:70:33,37:33:1184:37:1301:-96.1574,0,-85.7962	1/1:127:0,127:0:0:127:4443:-399.181,-38.2308,0	0/1:181:93,88:93:3340:88:3120:-226.444,0,-246.33	1/1:211:0,211:0:0:211:7402:-665.207,-63.5173,0	1/1:25:0,25:0:0:25:892:-80.5199,-7.52575,0	1/1:188:0,188:0:0:188:6505:-584.72,-56.5936,0	0/1:117:68,49:68:2421:49:1717:-119.035,0,-182.923	1/1:107:0,107:0:0:107:3696:-332.345,-32.2102,0	0/1:6:2,4:2:72:4:144:-11.4937,0,-5.03054	1/1:18:0,18:0:0:18:632:-57.1544,-5.41854,0	1/1:8:0,8:0:0:8:254:-23.128,-2.40824,0	1/1:10:0,10:0:0:10:356:-32.2284,-3.0103,0	1/1:21:0,21:0:0:21:729:-65.512,-6.32163,0	0/1:148:67,81:67:2403:81:2875:-213.747,0,-171.973	0/1:145:78,67:78:2799:67:2367:-169.151,0,-208.471	1/1:38:0,38:0:0:38:1333:-119.16,-11.4391,0	0/1:12:8,4:8:280:4:144:-9.42116,0,-21.9269	1/1:115:0,115:0:0:115:4074:-365.634,-34.6185,0	1/1:30:0,30:0:0:30:1047:-94.4375,-9.0309,0	1/1:161:1,160:1:36:160:5628:-501.033,-44.8676,0	1/1:43:0,43:0:0:43:1531:-137.909,-12.9443,0	0/1:45:25,20:25:900:20:708:-50.2851,0,-67.7747	0/1:143:75,68:75:2700:68:2390:-172.222,0,-200.196	0/1:100:51,49:51:1828:49:1744:-126.799,0,-134.697	1/1:91:1,90:1:36:90:3177:-282.045,-23.7955,0	1/1:65:0,65:0:0:65:2268:-204.181,-19.567,0	0/1:55:30,25:30:1072:25:892:-63.945,0,-80.2358	1/1:120:0,120:0:0:120:4191:-376.883,-36.1236,0	0/1:3:2,1:2:72:1:32:-2.29554,0,-5.93363	1/1:95:0,95:0:0:95:3369:-302.633,-28.5979,0	1/1:60:0,60:0:0:60:2109:-189.951,-18.0618,0	0/1:2:1,1:1:36:1:36:-2.98936,0,-2.99621	0/1:108:61,47:61:2184:47:1637:-114.807,0,-164.285	0/1:47:24,23:24:860:23:820:-59.8555,0,-63.5734	0/1:8:3,5:3:108:5:176:-13.775,0,-7.66693	0/1:30:12,18:12:428:18:628:-47.7992,0,-29.8279	1/1:132:1,131:1:36:131:4562:-405.934,-36.1377,0	0/1:92:46,46:46:1652:46:1621:-118.406,0,-121.274	1/1:1:0,1:0:0:1:32:-3.19863,-0.30103,0	0/1:100:28,72:28:1000:72:2524:-197.262,0,-60.2124	0/1:97:57,40:57:2024:40:1420:-98.7722,0,-153.202	0/1:51:26,25:26:921:25:892:-65.1646,0,-67.8527	1/1:58:0,58:0:0:58:2040:-183.575,-17.4597,0	0/1:171:101,70:101:3598:70:2408:-165.33,0,-272.547	1/1:98:0,98:0:0:98:3457:-310.748,-29.5009,0	0/1:31:13,18:13:445:18:631:-47.7291,0,-31.0434	1/1:48:0,48:0:0:48:1673:-150.584,-14.4494,0	1/1:46:0,46:0:0:46:1633:-147.182,-13.8474,0	0/1:28:16,12:16:568:12:424:-30.049,0,-43.023	1/1:157:0,157:0:0:157:5486:-492.236,-47.2617,0	1/1:37:0,37:0:0:37:1316:-118.077,-11.1381,0	1/1:137:0,137:0:0:137:4795:-429.834,-41.2411,0	0/1:120:78,41:78:2774:41:1441:-93.658,0,-213.865	1/1:118:0,118:0:0:118:4119:-369.488,-35.5215,0	0/1:42:26,16:26:932:16:560:-37.9947,0,-71.5556	0/1:12:6,6:6:216:6:216:-16.1405,0,-16.1782	0/1:72:34,38:34:1224:38:1317:-96.9093,0,-88.7929	1/1:54:0,54:0:0:54:1904:-170.972,-16.2556,0	1/1:172:0,172:0:0:172:6069:-545.85,-51.7772,0	0/1:45:16,29:16:572:29:1019:-78.4243,0,-38.2671	1/1:57:0,57:0:0:57:2001:-180.235,-17.1587,0	1/1:23:0,23:0:0:23:812:-73.3403,-6.92369,0	0/1:79:47,32:47:1684:32:1140:-79.0039,0,-128.066	1/1:12:0,12:0:0:12:432:-39.1465,-3.61236,0	0/1:50:28,22:28:968:22:761:-53.4917,0,-72.3768	1/1:78:0,78:0:0:78:2740:-246.324,-23.4803,0	1/1:51:0,51:0:0:51:1804:-162.294,-15.3525,0	0/1:96:43,53:43:1519:53:1843:-136.46,0,-108.103	0/1:65:43,22:43:1525:22:788:-51.6447,0,-117.973	1/1:124:0,124:0:0:124:4338:-390.055,-37.3277,0	1/1:90:0,90:0:0:90:3182:-286.211,-27.0927,0
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chr11	5055278	.	G	T	104361	PASS	AB=0.507662;ABP=4.54089;AC=145;AF=0.771277;AN=188;AO=4911;CIGAR=1X;DP=6392;DPB=6392;DPRA=0;EPP=10667.1;EPPR=3216.79;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9084;MQMR=59.8953;NS=94;NUMALT=1;ODDS=1.81314;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175795;QR=52775;RO=1480;RPL=0;RPP=10667.1;RPPR=3216.79;RPR=4911;RUN=1;SAF=4911;SAP=10667.1;SAR=0;SRF=1480;SRP=3216.79;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49:0:0:49:1752:-157.963,-14.7505,0	0/1:51:25,26:25:881:26:920:-67.7645,0,-64.2515	1/1:109:0,109:0:0:109:3900:-351.157,-32.8123,0	0/1:96:43,53:43:1548:53:1904:-142.71,0,-110.7	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:40:0,40:0:0:40:1433:-129.264,-12.0412,0	1/1:100:0,100:0:0:100:3592:-323.258,-30.103,0	1/1:96:0,96:0:0:96:3436:-309.45,-28.8989,0	0/1:75:29,46:29:1044:46:1648:-125.949,0,-71.6966	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:111:65,46:65:2316:46:1634:-113.93,0,-175.285	0/1:76:35,41:35:1256:41:1476:-110.257,0,-90.4661	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	1/1:50:0,50:0:0:50:1783:-160.75,-15.0515,0	1/1:31:0,31:0:0:31:1103:-99.5752,-9.33193,0	0/1:25:13,12:13:468:12:428:-31.3331,0,-34.933	0/1:31:13,18:13:468:18:644:-48.9568,0,-33.1277	0/1:124:66,58:66:2340:58:2069:-149.151,0,-173.533	1/1:125:0,125:0:0:125:4459:-401.444,-37.6288,0	0/1:75:39,36:39:1396:36:1284:-93.2862,0,-103.362	0/1:79:44,35:44:1572:35:1253:-89.2875,0,-117.99	0/1:51:14,37:14:481:37:1332:-104.83,0,-28.2625	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	0/1:160:86,74:86:3076:74:2652:-190.761,0,-228.876	1/1:172:0,172:0:0:172:6163:-554.767,-51.7772,0	1/1:34:0,34:0:0:34:1215:-109.645,-10.235,0	1/1:128:0,128:0:0:128:4591:-413.354,-38.5318,0	0/1:61:30,31:30:1050:31:1116:-82.3889,0,-76.4434	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:356:-32.3803,-3.0103,0	0/1:205:105,100:105:3755:100:3592:-261.774,0,-276.42	0/1:75:47,28:47:1684:28:1008:-68.4591,0,-129.27	1/1:45:0,45:0:0:45:1611:-145.279,-13.5464,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:73:0,73:0:0:73:2601:-234.336,-21.9752,0	1/1:21:0,21:0:0:21:747:-67.5543,-6.32163,0	1/1:106:0,106:0:0:106:3804:-342.557,-31.9092,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:62:28,34:28:989:34:1207:-90.2677,0,-70.6582	0/1:102:33,69:33:1184:69:2476:-192.36,0,-76.1633	0/1:72:38,34:38:1356:34:1220:-88.4305,0,-100.665	1/1:93:0,93:0:0:93:3328:-299.581,-27.9958,0	1/1:95:0,95:0:0:95:3416:-307.648,-28.5979,0	0/1:73:35,38:35:1256:38:1357:-100.446,0,-91.3417	1/1:121:0,121:0:0:121:4327:-389.606,-36.4246,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:80:0,80:0:0:80:2876:-259.056,-24.0824,0	1/1:79:0,79:0:0:79:2835:-255.388,-23.7814,0	0/1:25:6,19:6:216:19:684:-54.3628,0,-12.2648	0/1:107:54,53:54:1887:53:1904:-139.428,0,-137.893	0/1:36:17,19:17:597:19:680:-50.6921,0,-43.219	0/1:9:5,4:5:165:4:144:-10.6043,0,-12.4643	0/1:17:7,10:7:240:10:352:-26.9007,0,-16.8172	1/1:55:0,55:0:0:55:1968:-177.394,-16.5567,0	0/1:102:51,51:51:1812:51:1832:-134.456,0,-132.656	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:120:70,50:70:2474:50:1780:-124.359,0,-186.788	0/1:130:68,62:68:2436:62:2224:-161.29,0,-180.361	0/1:51:26,25:26:936:25:900:-65.9685,0,-69.162	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:101:46,55:46:1652:55:1976:-147.711,0,-118.551	1/1:133:2,131:2:72:131:4696:-415.963,-33.2003,0	0/1:44:28,16:28:995:16:576:-38.9297,0,-76.6164	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:43:0,43:0:0:43:1544:-139.235,-12.9443,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:117:0,117:0:0:117:4161:-374.6,-35.2205,0	1/1:80:0,80:0:0:80:2848:-256.515,-24.0824,0	1/1:56:0,56:0:0:56:1991:-179.419,-16.8577,0	0/1:116:41,75:41:1472:75:2687:-207.154,0,-97.8567	1/1:48:0,48:0:0:48:1704:-153.616,-14.4494,0	0/1:37:23,14:23:828:14:492:-33.4724,0,-63.7051	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.4678	0/1:64:25,39:25:900:39:1399:-106.943,0,-62.0551	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:165:0,164:0:0:164:5883:-529.191,-49.3689,0	0/1:53:24,29:24:860:29:1044:-78.3202,0,-61.7672	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:149:72,77:72:2579:77:2755:-203.338,0,-187.434	1/1:36:0,36:0:0:36:1279:-115.342,-10.8371,0	0/1:58:29,29:29:1036:29:1035:-76.0033,0,-76.0942	1/1:75:0,75:0:0:75:2692:-242.522,-22.5773,0	1/1:25:0,25:0:0:25:879:-79.4269,-7.52575,0	0/1:74:35,39:35:1260:39:1387:-102.852,0,-91.4293	0/1:61:39,22:39:1378:22:780:-52.1602,0,-105.954	1/1:91:0,91:0:0:91:3260:-293.621,-27.3937,0	1/1:110:0,110:0:0:110:3927:-353.432,-33.1133,0
chr11	5055280	.	G	A	25361.3	PASS	AB=0.499669;ABP=3.01318;AC=43;AF=0.228723;AN=188;AO=1510;CIGAR=1X;DP=6411;DPB=6411;DPRA=1.09905;EPP=3281.93;EPPR=10636.7;GTI=0;LEN=1;MEANALT=1.02273;MQM=59.898;MQMR=59.9026;NS=94;NUMALT=1;ODDS=2.59768;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54078;QR=174718;RO=4897;RPL=0;RPP=3281.93;RPPR=10636.7;RPR=1510;RUN=1;SAF=1510;SAP=3281.93;SAR=0;SRF=4897;SRP=10636.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:48,0:48:1679:0:0:0,-14.4494,-151.39	0/1:50:25,25:25:896:25:892:-65.5464,0,-65.9089	0/0:110:110,0:110:3911:0:0:0,-33.1133,-352.143	0/1:97:53,44:53:1900:44:1584:-113.638,0,-142.066	0/0:27:27,0:27:957:0:0:0,-8.12781,-86.4439	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.484	0/0:99:99,0:99:3541:0:0:0,-29.802,-318.888	0/0:98:98,0:98:3425:0:0:0,-29.5009,-308.458	0/1:74:45,29:45:1597:29:1036:-71.2768,0,-121.661	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.282	0/1:109:45,64:45:1616:64:2295:-173.997,0,-112.915	0/1:76:41,35:41:1468:35:1260:-90.8263,0,-109.537	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:86:86,0:86:3062:0:0:0,-25.8886,-275.806	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.678	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4269	0/1:24:11,13:11:396:13:464:-34.8719,0,-28.758	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3807	0/1:123:57,66:57:2037:66:2353:-175.001,0,-146.574	0/0:128:128,0:128:4551:0:0:0,-38.5318,-409.716	0/1:75:36,39:36:1288:39:1404:-104.082,0,-93.6463	0/1:80:35,44:35:1256:44:1576:-118.059,0,-89.2727	0/1:52:37,15:37:1313:15:540:-33.283,0,-102.816	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.128	0/1:164:72,92:72:2565:92:3272:-245.3,0,-181.73	0/0:176:176,0:176:6320:0:0:0,-52.9813,-568.652	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.497	0/0:130:130,0:130:4642:0:0:0,-39.1339,-417.94	0/1:60:31,29:31:1116:29:1044:-76.213,0,-82.6899	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5049	0/1:202:97,105:97:3484:105:3780:-279.578,0,-252.962	0/1:76:28,48:28:985:48:1724:-132.567,0,-66.0832	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.85	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.638	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3566	0/0:106:106,0:106:3747:0:0:0,-31.9092,-337.422	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:64:33,31:33:1180:31:1116:-81.4858,0,-87.2137	0/1:104:70,34:70:2482:34:1220:-78.7997,0,-192.295	0/1:72:34,38:34:1205:38:1353:-100.393,0,-87.077	0/0:91:91,0:91:3219:0:0:0,-27.3937,-289.93	0/0:94:94,0:94:3365:0:0:0,-28.2968,-303.058	0/1:72:37,35:37:1328:35:1246:-90.7677,0,-98.1281	0/0:119:119,0:119:4230:0:0:0,-35.8226,-380.879	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.705	0/0:81:81,0:81:2863:0:0:0,-24.3834,-257.904	0/1:25:19,6:19:669:6:216:-12.2648,0,-53.0073	0/1:107:52,55:52:1849:55:1946:-143.202,0,-134.478	0/1:38:19,19:19:684:19:684:-50.445,0,-50.4512	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.759	0/1:102:50,52:50:1796:52:1872:-138.054,0,-131.217	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:121:49,72:49:1737:72:2565:-194.673,0,-120.188	0/1:130:61,69:61:2188:69:2484:-184.679,0,-158.052	0/1:51:25,26:25:900:26:936:-69.162,0,-65.9685	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:101:57,44:57:2018:44:1569:-111.093,0,-151.485	0/0:134:132,2:132:4706:2:72:0,-33.5013,-416.861	0/1:45:17,28:17:612:28:1008:-77.4724,0,-41.8671	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.005	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:117:116,0:116:4133:0:0:0,-34.9195,-371.72	0/0:80:78,0:78:2774:0:0:0,-23.4803,-249.608	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.831	0/1:117:75,42:75:2692:42:1497:-99.802,0,-207.304	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.375	0/1:38:15,23:15:532:23:824:-63.0433,0,-36.7727	0/1:15:6,9:6:216:9:315:-24.1148,0,-15.2751	0/1:65:38,27:38:1349:27:968:-67.8704,0,-102.141	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:165:165,0:165:5906:0:0:0,-49.6699,-531.617	0/1:53:29,24:29:1036:24:864:-62.128,0,-77.5993	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/1:152:77,75:77:2722:75:2688:-196.038,0,-199.465	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.513	0/1:60:29,31:29:1040:31:1108:-81.9692,0,-75.8526	0/0:71:71,0:71:2543:0:0:0,-21.3731,-229.118	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:76:38,38:38:1364:38:1368:-100.543,0,-100.182	0/1:63:21,42:21:752:42:1495:-115.878,0,-49.0414	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:109:109,0:109:3882:0:0:0,-32.8123,-349.203
chr11	5307626	.	GG	CG	124237	PASS	AB=0.474607;ABP=24.7357;AC=145;AF=0.788043;AN=184;AO=5870;CIGAR=1X1M;DP=7933;DPB=7933;DPRA=0;EPP=12550.6;EPPR=4337.7;GTI=4;LEN=1;MEANALT=1.21739;MQM=59.9927;MQMR=59.9971;NS=92;NUMALT=1;ODDS=0.880968;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209255;QR=72132;RO=2036;RPL=5848;RPP=12559.2;RPPR=4337.7;RPR=22;RUN=1;SAF=1;SAP=12740.9;SAR=5869;SRF=0;SRP=4424.13;SRR=2036;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:68:0,64:0:0:64:2296:-206.541,-19.2659,0	0/1:68:39,29:39:1371:29:1032:-72.7234,0,-103.218	1/1:102:0,102:0:0:102:3623:-326.277,-30.7051,0	0/1:140:73,67:73:2599:67:2388:-173.032,0,-192.015	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:35:0,35:0:0:35:1238:-111.723,-10.5361,0	1/1:96:0,96:0:0:96:3427:-308.644,-28.8989,0	1/1:134:0,134:0:0:134:4766:-429.098,-40.338,0	0/1:111:63,47:63:2235:47:1668:-116.934,0,-167.941	1/1:65:0,64:0:0:64:2300:-206.94,-19.2659,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:158:69,86:69:2464:86:3069:-229.418,0,-174.995	0/1:127:60,67:60:2138:67:2400:-178.026,0,-154.456	1/1:61:0,61:0:0:61:2170:-195.565,-18.3628,0	1/1:102:0,102:0:0:102:3660:-329.603,-30.7051,0	1/1:51:1,50:1:36:50:1788:-157.604,-11.7543,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	0/1:49:32,17:32:1146:17:603:-39.849,0,-88.6966	0/1:56:38,18:38:1357:18:648:-41.7942,0,-105.573	0/1:148:87,61:87:3095:61:2181:-152.003,0,-234.226	1/1:162:0,161:0:0:161:5724:-514.921,-48.4658,0	0/1:60:35,23:35:1219:23:824:-56.6639,0,-92.1914	0/1:98:53,44:53:1883:44:1557:-111.007,0,-140.335	0/1:56:31,25:31:1097:25:888:-63.3813,0,-82.1816	1/1:69:0,68:0:0:68:2417:-217.423,-20.47,0	0/1:181:93,88:93:3322:88:3123:-226.811,0,-244.713	1/1:254:0,252:0:0:252:9006:-810.16,-75.8596,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:181:1,180:1:36:180:6436:-575.728,-50.8882,0	0/1:74:39,35:39:1362:35:1243:-89.8976,0,-100.598	1/1:83:0,83:0:0:83:2957:-266.276,-24.9855,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:249:134,115:134:4742:115:4116:-295.668,0,-351.983	0/1:100:51,49:51:1785:49:1756:-128.221,0,-130.826	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:87:0,87:0:0:87:3102:-279.407,-26.1896,0	1/1:57:1,56:1:34:56:2016:-178.314,-13.7598,0	1/1:104:0,104:0:0:104:3693:-332.574,-31.3071,0	1/1:102:0,100:0:0:100:3580:-322.047,-30.103,0	1/1:81:0,81:0:0:81:2869:-258.447,-24.3834,0	0/1:131:51,80:51:1785:80:2855:-217.753,0,-121.496	0/1:96:56,40:56:1952:40:1419:-99.1078,0,-147.053	1/1:112:1,111:1:36:111:3964:-353.354,-30.1171,0	1/1:92:0,92:0:0:92:3283:-295.69,-27.6948,0	0/1:87:37,50:37:1309:50:1783:-134.562,0,-91.9203	1/1:88:0,88:0:0:88:3125:-281.476,-26.4906,0	.:.:.:.:.:.:.:.	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:64:0,63:0:0:63:2243:-201.773,-18.9649,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:133:63,70:63:2239:70:2467:-182.245,0,-161.737	0/1:124:47,77:47:1664:77:2744:-209.875,0,-112.717	.:.:.:.:.:.:.:.	0/1:11:9,2:9:313:2:68:-3.14638,0,-25.1937	1/1:104:0,103:0:0:103:3669:-330.053,-31.0061,0	0/1:128:65,63:65:2313:63:2252:-164.411,0,-169.899	1/1:2:0,1:0:0:1:36:-3.23845,-0.30103,0	0/1:122:58,64:58:2040:64:2275:-168.286,0,-147.144	0/1:135:65,68:65:2290:68:2392:-175.14,0,-165.966	0/1:53:24,29:24:860:29:1035:-77.5085,0,-61.7675	1/1:35:0,35:0:0:35:1251:-112.894,-10.5361,0	0/1:246:126,120:126:4480:120:4284:-311.686,0,-329.321	1/1:99:0,98:0:0:98:3503:-315.12,-29.5009,0	0/1:52:23,29:23:822:29:1036:-77.9004,0,-58.6495	1/1:56:0,56:0:0:56:1995:-179.823,-16.8577,0	1/1:62:0,62:0:0:62:2209:-199.075,-18.6639,0	0/1:22:12,10:12:432:10:351:-25.304,0,-32.5985	1/1:150:0,150:0:0:150:5351:-481.724,-45.1545,0	1/1:73:0,73:0:0:73:2611:-235.237,-21.9752,0	1/1:91:1,90:1:36:90:3181:-282.916,-23.7955,0	0/1:70:46,24:46:1633:24:847:-55.4766,0,-126.186	1/1:29:0,29:0:0:29:1031:-93.1026,-8.72987,0	0/1:82:39,43:39:1378:43:1540:-114.209,0,-99.6343	0/1:14:12,2:12:406:2:72:-2.6223,0,-32.6499	0/1:45:31,14:31:1097:14:491:-30.9748,0,-85.493	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	1/1:128:1,126:1:36:126:4475:-399.324,-34.9924,0	0/1:77:40,37:40:1414:37:1328:-96.6429,0,-104.378	1/1:93:0,93:0:0:93:3331:-300.007,-27.9958,0	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	0/1:192:102,90:102:3607:90:3215:-231.775,0,-267.041	1/1:36:0,35:0:0:35:1260:-113.394,-10.5361,0	0/1:118:65,53:65:2308:53:1866:-132.695,0,-172.46	1/1:103:0,103:0:0:103:3658:-329.425,-31.0061,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:119:58,61:58:2056:61:2171:-159.834,0,-149.489	0/1:135:94,41:94:3345:41:1472:-92.1371,0,-260.628	1/1:68:0,68:0:0:68:2413:-217.425,-20.47,0	1/1:167:1,165:1:36:165:5872:-524.994,-46.7325,0
chr11	5307632	.	G	A	34759.3	PASS	AB=0.516295;ABP=11.9976;AC=39;AF=0.211957;AN=184;AO=2017;CIGAR=1X;DP=8003;DPB=8003;DPRA=1.41499;EPP=4330.91;EPPR=12875.7;GTI=3;LEN=1;MEANALT=1.11364;MQM=59.997;MQMR=59.9968;NS=92;NUMALT=1;ODDS=0.296439;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=72314;QR=214062;RO=5980;RPL=2011;RPP=4330.91;RPPR=12884.4;RPR=6;RUN=1;SAF=0;SAP=4382.87;SAR=2017;SRF=1;SRP=12979.7;SRR=5979;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:69:69,0:69:2464:0:0:0,-20.7711,-222.014	0/1:68:30,38:30:1072:38:1359:-102.14,0,-76.3224	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/1:142:70,72:70:2486:72:2592:-190.782,0,-181.246	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.438	0/0:130:130,0:130:4649:0:0:0,-39.1339,-418.571	0/1:112:50,62:50:1784:62:2228:-167.068,0,-127.127	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/1:158:88,70:88:3160:70:2504:-178.049,0,-237.061	0/1:127:67,60:67:2396:60:2139:-154.547,0,-177.666	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.689	0/0:104:103,1:103:3700:1:36:0,-27.7088,-329.603	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:50:18,32:18:644:32:1152:-88.934,0,-43.2391	0/1:57:19,38:19:684:38:1368:-106.262,0,-44.7316	0/1:147:64,82:64:2304:82:2937:-220.401,0,-163.458	0/0:165:165,0:165:5890:0:0:0,-49.6699,-530.211	0/1:59:23,36:23:824:36:1292:-98.823,0,-56.7225	0/1:96:43,53:43:1544:53:1904:-142.739,0,-110.354	0/1:54:24,30:24:864:30:1080:-81.2576,0,-61.8269	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.743	0/1:181:90,91:90:3194:91:3242:-237.513,0,-233.198	0/0:258:258,0:258:9255:0:0:0,-77.6657,-832.915	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/0:184:183,1:183:6571:1:36:0,-51.7912,-587.87	0/1:74:35,39:35:1260:39:1395:-103.572,0,-91.4293	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.843	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:251:118,133:118:4214:133:4784:-355.155,0,-303.882	0/1:100:50,50:50:1796:50:1788:-131.1,0,-131.819	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.536	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.286	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:104:104,0:104:3723:0:0:0,-31.3071,-335.271	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.029	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/1:136:84,52:84:2999:52:1868:-127.459,0,-229.201	0/1:98:43,55:43:1531:55:1972:-148.254,0,-108.581	0/0:113:110,1:110:3952:1:36:0,-30.1259,-352.369	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:86:49,37:49:1760:37:1332:-94.2938,0,-132.795	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	.:.:.:.:.:.:.:.	0/0:85:85,0:85:3047:0:0:0,-25.5875,-274.459	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:135:71,63:71:2540:63:2263:-163.353,0,-188.271	0/1:127:80,47:80:2867:47:1692:-114.336,0,-220.035	.:.:.:.:.:.:.:.	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/1:129:64,65:64:2278:65:2336:-171.666,0,-166.448	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:123:66,57:66:2346:57:2048:-147.565,0,-174.372	0/1:137:71,65:71:2518:65:2336:-169.199,0,-185.572	0/1:53:29,24:29:1040:24:849:-60.7732,0,-77.9598	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:246:123,123:123:4398:123:4408:-322.839,0,-321.939	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/1:53:30,23:30:1071:23:828:-58.8895,0,-80.746	0/0:60:60,0:60:2134:0:0:0,-18.0618,-192.327	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/0:155:155,0:155:5548:0:0:0,-46.6596,-499.445	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:91:90,1:90:3216:1:36:0,-23.7955,-286.065	0/1:71:24,47:24:860:47:1673:-129.482,0,-56.3487	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:85:46,39:46:1639:39:1404:-101.072,0,-122.21	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.6223	0/1:45:14,31:14:504:31:1103:-86.0335,0,-32.1517	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:130:129,1:129:4619:1:36:0,-35.5356,-412.274	0/1:75:35,40:35:1260:40:1421:-105.609,0,-91.1282	0/0:95:95,0:95:3399:0:0:0,-28.5978,-306.124	0/0:69:69,0:69:2459:0:0:0,-20.7711,-221.564	0/1:192:92,99:92:3308:99:3564:-263.11,0,-240.081	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:118:53,65:53:1908:65:2321:-173.627,0,-136.476	0/0:103:103,0:103:3687:0:0:0,-31.0061,-332.032	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/1:120:62,58:62:2206:58:2077:-151.077,0,-162.68	0/1:134:40,94:40:1428:94:3367:-262.907,0,-88.4795	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:166:166,0:166:5964:0:0:0,-49.971,-536.864
chr11	5531909	.	GCTCT	GTTCT,GT	94824.7	PASS	AB=0.488394,0.507892;ABP=5.53058,4.17568;AC=148,40;AF=0.787234,0.212766;AN=188;AO=3332,1097;CIGAR=1M1X3M,1M3D1M;DP=4450;DPB=3791.8;DPRA=47.8387,1.41053;EPP=7108.65,2385.12;EPPR=5.18177;GTI=3;LEN=1,3;MEANALT=1.60215,2.14634;MQM=59.4451,59.6135;MQMR=60;NS=94;NUMALT=2;ODDS=0.25581;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=118521,38244;QR=36;RO=1;RPL=3317,1097;RPP=7108.65,2385.12;RPPR=5.18177;RPR=15,0;RUN=1,1;SAF=0,0;SAP=7238.36,2385.12;SAR=3332,1097;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,del	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18,0:0:0:18,0:629,0:-56.9256,-5.41854,0,-56.9256,-5.41854,-56.9256	1/2:57:0,31,26:0:0:31,26:1100,897:-162.401,-73.2148,-63.8829,-89.535,0,-81.7082	1/1:79:0,79,0:0:0:79,0:2817,0:-253.622,-23.7814,0,-253.622,-23.7814,-253.622	1/2:94:0,50,44:0:0:50,44:1785,1548:-271.878,-126.353,-111.302,-145.879,0,-132.634	1/1:23:0,23,0:0:0:23,0:820,0:-74.1068,-6.92369,0,-74.1068,-6.92369,-74.1068	1/1:28:0,28,0:0:0:28,0:963,0:-86.9748,-8.42884,0,-86.9748,-8.42884,-86.9748	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:59:0,59,0:0:0:59,0:2077,0:-186.97,-17.7608,0,-186.97,-17.7608,-186.97	1/2:51:0,23,28:0:0:23,28:824,988:-147.829,-80.6998,-73.7761,-67.4845,0,-59.0557	1/1:43:0,42,0:0:0:42,0:1492,0:-134.332,-12.6433,0,-134.332,-12.6433,-134.332	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7547,-9.0309,0,-96.7547,-9.0309,-96.7547	1/2:47:0,19,28:0:0:19,28:684,981:-135.969,-80.1546,-74.435,-56.1708,0,-47.7419	1/2:43:0,18,25:0:0:18,25:648,866:-123.573,-70.708,-65.2894,-53.2196,0,-45.6938	1/1:60:0,59,0:0:0:59,0:2072,0:-186.362,-17.7608,0,-186.362,-17.7608,-186.362	1/1:41:0,41,0:0:0:41,0:1445,0:-130.342,-12.3422,0,-130.342,-12.3422,-130.342	1/1:29:0,29,0:0:0:29,0:1034,0:-93.3181,-8.72987,0,-93.3181,-8.72987,-93.3181	1/1:24:0,24,0:0:0:24,0:845,0:-76.3507,-7.22472,0,-76.3507,-7.22472,-76.3507	1/2:29:0,14,15:0:0:14,15:496,532:-84.0868,-43.6976,-39.4832,-40.7434,0,-36.228	1/2:30:0,16,14:0:0:16,14:568,462:-83.9568,-37.6793,-32.8628,-46.619,0,-42.4046	1/2:77:0,33,44:0:0:33,44:1180,1515:-219.606,-123.386,-113.452,-96.5717,0,-83.3264	1/1:69:0,69,0:0:0:69,0:2456,0:-220.543,-20.7711,0,-220.543,-20.7711,-220.543	1/2:75:0,12,63:0:0:12,63:432,2203:-214.806,-179.564,-175.951,-35.6006,0,-16.6357	1/2:38:0,11,27:0:0:11,27:377,952:-108.466,-77.8652,-74.5538,-30.946,0,-22.8182	1/2:54:0,22,30:0:0:22,30:776,1049:-148.486,-85.3156,-78.6929,-63.1715,0,-54.1406	1/1:34:0,30,0:0:0:30,0:1065,0:-95.7948,-9.0309,0,-95.7948,-9.0309,-95.7948	1/2:139:0,63,75:0:0:63,75:2215,2680:-398.472,-218.617,-199.652,-179.956,0,-157.379	1/1:108:1,107,0:1:36:107,0:3836,0:-341.792,-28.913,0,-342.093,-32.2102,-345.031	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:138:0,138,0:0:0:138,0:4921,0:-442.676,-41.5421,0,-442.676,-41.5421,-442.676	1/2:54:0,35,19:0:0:35,19:1244,680:-157.082,-55.7195,-45.1835,-101.719,0,-95.9998	1/1:27:0,27,0:0:0:27,0:953,0:-86.08,-8.12781,0,-86.08,-8.12781,-86.08	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:27:0,27,0:0:0:27,0:953,0:-85.8083,-8.12781,0,-85.8083,-8.12781,-85.8083	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:31:0,31,0:0:0:31,0:1101,0:-99.3984,-9.33193,0,-99.3984,-9.33193,-99.3984	1/2:119:0,60,58:0:0:60,58:2144,2011:-337.668,-163.435,-145.374,-174.225,0,-156.765	1/2:95:0,59,36:0:0:59,36:2112,1250:-274.182,-101.953,-84.1919,-172.58,0,-161.743	1/1:27:0,27,0:0:0:27,0:953,0:-86.081,-8.12781,0,-86.081,-8.12781,-86.081	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:52:0,51,0:0:0:51,0:1813,0:-163.115,-15.3525,0,-163.115,-15.3525,-163.115	1/1:25:0,25,0:0:0:25,0:896,0:-80.9511,-7.52575,0,-80.9511,-7.52575,-80.9511	1/1:57:0,57,0:0:0:57,0:1998,0:-180.087,-17.1587,0,-180.087,-17.1587,-180.087	1/1:29:0,29,0:0:0:29,0:1028,0:-92.8307,-8.72987,0,-92.8307,-8.72987,-92.8307	1/1:35:0,35,0:0:0:35,0:1245,0:-112.353,-10.5361,0,-112.353,-10.5361,-112.353	1/2:44:0,18,26:0:0:18,26:633,920:-126.802,-75.2856,-69.867,-51.8683,0,-44.0415	1/2:73:0,51,22:0:0:51,22:1790,694:-201.82,-56.1294,-40.7769,-146.016,0,-139.394	1/1:81:0,80,0:0:0:80,0:2814,0:-253.219,-24.0824,0,-253.219,-24.0824,-253.219	1/1:66:0,65,0:0:0:65,0:2332,0:-209.823,-19.567,0,-209.823,-19.567,-209.823	1/2:44:0,24,19:0:0:24,19:856,684:-125.684,-55.9039,-48.6792,-69.9278,0,-64.2082	1/1:63:0,63,0:0:0:63,0:2256,0:-203.072,-18.9649,0,-203.072,-18.9649,-203.072	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:98:0,97,0:0:0:97,0:3475,0:-312.278,-29.1999,0,-312.278,-29.1999,-312.278	1/1:4:0,4,0:0:0:4,0:144,0:-13.2885,-1.20412,0,-13.2885,-1.20412,-13.2885	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:61:0,33,27:0:0:33,27:1184,933:-172.388,-75.8062,-65.8722,-96.6023,0,-88.4745	1/2:41:0,17,24:0:0:17,24:597,856:-118.501,-70.1346,-65.0171,-48.7193,0,-41.4945	1/2:5:0,4,1:0:0:4,1:140,36:-14.6799,-3.29724,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chr11	5642290	.	C	T	207556	PASS	AB=0.519891;ABP=23.2247;AC=145;AF=0.771277;AN=188;AO=9670;CIGAR=1X;DP=12505;DPB=12505;DPRA=0;EPP=20750;EPPR=6113.61;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.5733;MQMR=59.656;NS=94;NUMALT=1;ODDS=1.4738;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=346398;QR=101286;RO=2834;RPL=9641;RPP=20750;RPPR=6113.61;RPR=29;RUN=1;SAF=0;SAP=21001.1;SAR=9670;SRF=0;SRP=6156.96;SRR=2834;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:132:0,132:0:0:132:4744:-427.054,-39.736,0	0/1:296:154,142:154:5484:142:5104:-370.32,0,-404.354	1/1:131:1,130:1:36:130:4668:-416.091,-35.8367,0	0/1:369:172,197:172:6150:197:7057:-524.032,0,-442.466	1/1:163:0,163:0:0:163:5830:-524.756,-49.0679,0	1/1:61:0,61:0:0:61:2188:-197.17,-18.3628,0	1/1:232:0,232:0:0:232:8290:-745.677,-69.839,0	1/1:343:0,343:0:0:343:12304:-1106.39,-103.253,0	0/1:217:102,115:102:3652:115:4132:-306.425,0,-263.5	1/1:223:0,223:0:0:223:7949:-715.254,-67.1297,0	1/1:44:0,44:0:0:44:1580:-142.378,-13.2453,0	0/1:82:37,45:37:1332:45:1612:-120.679,0,-95.4979	0/1:87:42,45:42:1504:45:1612:-119.125,0,-109.448	1/1:73:0,73:0:0:73:2620:-236.029,-21.9752,0	1/1:101:0,101:0:0:101:3624:-326.35,-30.404,0	1/1:70:0,70:0:0:70:2512:-226.313,-21.0721,0	1/1:81:0,81:0:0:81:2904:-261.556,-24.3834,0	0/1:73:34,39:34:1216:39:1400:-104.299,0,-87.7599	0/1:36:22,14:22:777:14:504:-34.861,0,-59.1852	0/1:191:92,98:92:3280:98:3519:-259.27,0,-237.85	1/1:264:0,264:0:0:264:9471:-851.794,-79.4719,0	0/1:91:61,30:61:2188:30:1068:-69.0383,0,-169.788	0/1:79:41,38:41:1472:38:1368:-99.6301,0,-108.986	0/1:272:81,191:81:2908:191:6860:-535.37,0,-180.066	1/1:38:0,38:0:0:38:1353:-122.067,-11.4391,0	0/1:496:231,265:231:8257:265:9511:-706.524,0,-593.771	1/1:361:1,360:1:36:360:12852:-1152.34,-105.074,0	1/1:63:0,63:0:0:63:2256:-203.286,-18.9649,0	1/1:276:1,275:1:36:275:9828:-880.732,-79.486,0	0/1:165:77,88:77:2741:88:3154:-234.399,0,-196.983	1/1:143:0,143:0:0:143:5086:-457.865,-43.0473,0	0/1:7:2,5:2:68:5:180:-14.4402,0,-4.3505	1/1:10:0,10:0:0:10:360:-32.735,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:10:0,10:0:0:10:345:-31.3774,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:246:118,128:118:4219:128:4582:-338.483,0,-305.781	0/1:201:88,113:88:3117:113:4052:-304.212,0,-220.092	1/1:61:0,61:0:0:61:2184:-196.794,-18.3628,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:279:0,279:0:0:279:10011:-900.884,-83.9874,0	1/1:32:0,32:0:0:32:1144:-103.268,-9.63296,0	1/1:238:0,238:0:0:238:8477:-762.181,-71.6451,0	1/1:119:0,119:0:0:119:4262:-383.663,-35.8226,0	1/1:100:0,100:0:0:100:3579:-322.229,-30.103,0	0/1:188:95,93:95:3383:93:3329:-243.179,0,-248.087	0/1:156:87,69:87:3116:69:2475:-175.161,0,-233.455	1/1:165:2,163:2:72:163:5837:-518.59,-42.8332,0	1/1:115:1,114:1:36:114:4104:-365.928,-31.0202,0	0/1:168:79,89:79:2827:89:3196:-237.264,0,-204.083	1/1:343:0,343:0:0:343:12250:-1101.98,-103.253,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:174:1,173:1:36:173:6156:-550.445,-48.7809,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:152:66,86:66:2352:86:3069:-230.488,0,-165.754	0/1:54:24,30:24:852:30:1068:-80.1671,0,-60.7448	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:25:11,14:11:396:14:504:-38.1705,0,-28.457	1/1:96:0,96:0:0:96:3452:-310.865,-28.8989,0	0/1:115:61,54:61:2192:54:1944:-140.615,0,-162.918	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:211:120,91:120:4291:91:3251:-229.267,0,-322.793	0/1:372:151,221:151:5400:221:7912:-600.042,0,-374.109	0/1:99:45,54:45:1616:54:1944:-144.724,0,-115.923	1/1:131:0,131:0:0:131:4674:-420.79,-39.4349,0	0/1:251:126,125:126:4499:125:4480:-327.793,0,-329.509	1/1:103:1,102:1:36:102:3664:-326.315,-27.4078,0	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.9694	1/1:127:0,127:0:0:127:4552:-409.749,-38.2308,0	1/1:116:2,114:2:72:114:4100:-362.339,-28.0828,0	0/1:30:10,20:10:352:20:716:-55.7345,0,-22.9849	1/1:103:0,103:0:0:103:3677:-331.061,-31.0061,0	1/1:60:0,60:0:0:60:2137:-192.514,-18.0618,0	1/1:247:0,247:0:0:247:8836:-795.18,-74.3544,0	0/1:200:114,86:114:4061:86:3084:-217.576,0,-305.468	1/1:153:0,153:0:0:153:5479:-493.172,-46.0576,0	0/1:157:71,86:71:2535:86:3092:-230.724,0,-181.019	0/1:11:7,4:7:244:4:144:-10.0023,0,-18.9881	0/1:161:89,72:89:3192:72:2576:-183.537,0,-239.033	1/1:142:0,142:0:0:142:5092:-458.375,-42.7463,0	1/1:207:0,207:0:0:207:7428:-668.533,-62.3132,0	0/1:141:67,74:67:2404:74:2664:-197.548,0,-174.083	1/1:60:0,60:0:0:60:2152:-193.943,-18.0618,0	1/1:143:1,142:1:32:142:5112:-457.001,-39.848,0	0/1:188:88,100:88:3149:100:3600:-267.594,0,-227.012	1/1:52:0,52:0:0:52:1872:-168.756,-15.6536,0	0/1:92:46,46:46:1652:46:1652:-121.252,0,-121.249	1/1:91:0,91:0:0:91:3266:-294.018,-27.3937,0	1/1:22:0,22:0:0:22:792:-71.6011,-6.62266,0	0/1:43:21,22:21:748:22:792:-58.6522,0,-54.6918	0/1:104:68,36:68:2440:36:1286:-84.6469,0,-188.538	1/1:148:0,148:0:0:148:5308:-477.842,-44.5524,0	1/1:149:0,149:0:0:149:5352:-481.777,-44.8535,0
chr11	5642301	.	T	C	46572.8	PASS	AB=0.478859;ABP=25.8722;AC=43;AF=0.228723;AN=188;AO=2829;CIGAR=1X;DP=12520;DPB=12520;DPRA=1.05886;EPP=6146.11;EPPR=21040.2;GTI=0;LEN=1;MEANALT=1.05882;MQM=59.6126;MQMR=59.5786;NS=94;NUMALT=1;ODDS=1.27822;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100711;QR=347259;RO=9688;RPL=2829;RPP=6146.11;RPPR=21040.2;RPR=0;RUN=1;SAF=0;SAP=6146.11;SAR=2829;SRF=0;SRP=21040.2;SRR=9688;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:134:134,0:134:4797:0:0:0,-40.338,-431.808	0/1:294:143,151:143:5129:151:5394:-397.011,0,-373.153	0/0:133:132,1:132:4722:1:36:0,-36.4387,-420.645	0/1:369:196,173:196:7001:173:6178:-445.011,0,-518.996	0/0:163:163,0:163:5838:0:0:0,-49.0679,-525.469	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.007	0/0:234:234,0:234:8344:0:0:0,-70.441,-750.813	0/0:342:342,0:342:12289:0:0:0,-102.952,-1104.73	0/1:215:115,99:115:4136:99:3494:-249.845,0,-307.331	0/0:226:226,0:226:8124:0:0:0,-68.0328,-730.918	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.299	0/1:82:45,37:45:1616:37:1328:-95.1378,0,-121.038	0/1:86:44,42:44:1584:42:1493:-108.757,0,-116.907	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.865	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.589	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.435	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.292	0/1:73:39,34:39:1404:34:1220:-88.1201,0,-104.648	0/1:36:14,22:14:500:22:773:-58.8243,0,-34.4991	0/1:196:102,94:102:3653:94:3304:-238.56,0,-269.797	0/0:261:261,0:261:9388:0:0:0,-78.5688,-844.689	0/1:93:30,63:30:1076:63:2236:-172.946,0,-69.1571	0/1:79:38,41:38:1368:41:1457:-107.634,0,-99.6301	0/1:276:196,80:196:6975:80:2868:-175.263,0,-544.449	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.385	0/1:502:267,235:267:9517:235:8369:-602.064,0,-705.261	0/0:359:359,0:359:12861:0:0:0,-108.07,-1156.63	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.005	0/0:274:274,0:274:9829:0:0:0,-82.4822,-884.447	0/1:165:86,79:86:3088:79:2817:-203.819,0,-228.459	0/0:145:145,0:145:5170:0:0:0,-43.6493,-465.352	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1391	0/0:11:11,0:11:381:0:0:0,-3.31133,-34.6114	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7409	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:243:129,114:129:4640:114:4088:-294.904,0,-344.56	0/1:200:110,90:110:3956:90:3175:-225.657,0,-295.887	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.846	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:275:275,0:275:9864:0:0:0,-82.7832,-887.665	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.029	0/0:235:235,0:235:8407:0:0:0,-70.742,-755.402	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.245	0/0:100:100,0:100:3565:0:0:0,-30.103,-320.968	0/1:189:92,97:92:3308:97:3427:-251.711,0,-240.99	0/1:151:68,82:68:2444:82:2899:-215.386,0,-174.672	0/0:164:162,2:162:5805:2:72:0,-42.5322,-515.709	0/0:115:114,1:114:4051:1:36:0,-31.0202,-361.162	0/1:165:89,76:89:3200:76:2736:-196.798,0,-238.543	0/0:344:344,0:344:12303:0:0:0,-103.554,-1106.51	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:178:177,1:177:6318:1:36:0,-49.9851,-565.002	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/1:152:86,66:86:3069:66:2312:-162.385,0,-230.488	0/1:56:31,25:31:1097:25:873:-62.0267,0,-82.171	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:26:14,12:14:504:12:432:-31.3882,0,-37.8695	0/0:96:96,0:96:3456:0:0:0,-28.8989,-310.524	0/1:115:54,61:54:1944:61:2184:-162.2,0,-140.615	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:209:92,117:92:3282:117:4160:-311.614,0,-232.668	0/1:371:221,150:221:7925:150:5363:-371.051,0,-601.376	0/1:101:54,47:54:1925:47:1654:-118.735,0,-142.415	0/0:131:131,0:131:4697:0:0:0,-39.4349,-422.631	0/1:253:125,128:125:4481:128:4572:-335.467,0,-327.277	0/0:105:104,1:104:3736:1:36:0,-28.0099,-332.735	0/1:16:10,6:10:360:6:216:-14.9694,0,-27.9278	0/0:127:126,1:126:4536:1:36:0,-34.6416,-404.727	0/0:115:114,1:114:4100:1:36:0,-31.0212,-365.579	0/1:30:20,10:20:720:10:356:-23.3494,0,-56.0955	0/0:103:103,0:103:3708:0:0:0,-31.0061,-333.849	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.527	0/0:246:246,0:246:8822:0:0:0,-74.0534,-793.92	0/1:205:89,116:89:3204:116:4111:-308.459,0,-226.863	0/0:151:151,0:151:5428:0:0:0,-45.4555,-488.584	0/1:156:86,70:86:3077:70:2497:-177.892,0,-230.171	0/1:12:4,8:4:135:8:288:-22.655,0,-8.87015	0/1:159:71,88:71:2556:88:3159:-236.563,0,-182.336	0/0:143:143,0:143:5136:0:0:0,-43.0473,-462.329	0/0:207:207,0:207:7418:0:0:0,-62.3132,-667.63	0/1:140:75,65:75:2696:65:2324:-167.189,0,-200.714	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.662	0/0:144:143,1:143:5133:1:36:0,-39.75,-458.491	0/1:185:100,85:100:3600:85:3032:-217.392,0,-268.497	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.756	0/1:93:46,47:46:1656:47:1677:-123.195,0,-121.311	0/0:92:92,0:92:3285:0:0:0,-27.6948,-295.584	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6011	0/1:43:21,22:21:756:22:781:-57.6536,0,-55.4137	0/1:105:36,68:36:1292:68:2420:-186.381,0,-84.8259	0/0:149:149,0:149:5341:0:0:0,-44.8535,-480.806	0/0:152:152,0:152:5441:0:0:0,-45.7566,-489.714
chr11	5741409	.	CCTA	CCTG	32651.1	PASS	AB=0.496846;ABP=3.35276;AC=44;AF=0.234043;AN=188;AO=1974;CIGAR=3M1X;DP=7643;DPB=7643;DPRA=1.41032;EPP=4272.14;EPPR=12135.2;GTI=2;LEN=1;MEANALT=1.33333;MQM=59.9909;MQMR=59.9938;NS=94;NUMALT=1;ODDS=0.521338;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69986;QR=197992;RO=5635;RPL=2;RPP=4272.14;RPPR=12126.6;RPR=1972;RUN=1;SAF=0;SAP=4289.5;SAR=1974;SRF=1;SRP=12230.6;SRR=5634;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:57:57,0:57:2003:0:0:0,-17.1587,-180.542	0/1:97:44,50:44:1556:50:1762:-130.206,0,-111.675	0/0:92:91,0:91:3184:0:0:0,-27.3937,-286.465	0/1:128:60,68:60:2115:68:2401:-177.814,0,-152.087	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.169	0/0:43:41,0:41:1442:0:0:0,-12.3422,-129.713	0/0:78:78,0:78:2713:0:0:0,-23.4803,-244.414	0/0:160:158,0:158:5558:0:0:0,-47.5627,-499.991	0/1:96:48,48:48:1684:48:1712:-125.467,0,-122.946	0/0:84:84,0:84:2924:0:0:0,-25.2865,-263.396	0/0:62:62,0:62:2163:0:0:0,-18.6639,-194.933	0/1:55:23,32:23:793:32:1139:-86.2617,0,-55.1294	0/1:52:29,23:29:1015:23:804:-57.0238,0,-76.0064	0/0:71:71,0:71:2462:0:0:0,-21.3731,-221.834	0/0:54:54,0:54:1904:0:0:0,-16.2556,-171.636	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/0:62:61,0:61:2112:0:0:0,-18.3628,-190.096	0/1:57:30,27:30:1051:27:953:-68.9246,0,-77.74	0/1:35:14,21:14:499:21:744:-56.7476,0,-34.7099	0/1:99:62,37:62:2179:37:1311:-88.4889,0,-166.573	0/0:114:114,0:114:3989:0:0:0,-34.3174,-359.205	0/1:106:36,70:36:1279:70:2486:-192.084,0,-83.5042	0/1:68:26,42:26:933:42:1472:-112.302,0,-63.8192	0/1:104:71,32:71:2481:32:1136:-71.1831,0,-192.179	0/0:66:66,0:66:2329:0:0:0,-19.868,-209.87	0/1:401:197,202:197:6876:202:7110:-519.534,0,-498.494	0/0:149:149,0:149:5263:0:0:0,-44.8535,-473.811	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3153	0/0:140:138,0:138:4888:0:0:0,-41.5421,-439.717	0/1:186:67,119:67:2351:119:4243:-326.059,0,-155.832	0/0:112:112,0:112:3938:0:0:0,-33.7154,-354.614	0/0:2:1,0:1:32:0:0:0,-0.30103,-2.85943	0/0:6:6,0:6:213:0:0:0,-1.80618,-19.5164	0/0:7:7,0:7:250:0:0:0,-2.10721,-22.8467	0/0:3:3,0:3:107:0:0:0,-0.90309,-9.98217	0/0:2:2,0:2:70:0:0:0,-0.60206,-6.64733	0/1:177:81,96:81:2834:96:3401:-253.022,0,-202.016	0/1:247:120,126:120:4212:126:4462:-327.381,0,-304.893	0/0:40:40,0:40:1412:0:0:0,-12.0412,-127.378	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/0:129:127,1:127:4498:1:36:0,-35.2734,-401.414	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5799	0/0:113:113,0:113:3954:0:0:0,-34.0164,-356.058	0/0:76:76,0:76:2686:0:0:0,-22.8783,-241.985	0/0:60:59,0:59:2083:0:0:0,-17.7608,-187.419	0/1:92:46,46:46:1607:46:1639:-120.103,0,-117.223	0/1:85:43,42:43:1521:42:1499:-109.616,0,-111.595	0/0:118:118,0:118:4161:0:0:0,-35.5215,-374.677	0/0:86:86,0:86:3017:0:0:0,-25.8886,-271.762	0/1:128:57,71:57:1991:71:2506:-187.261,0,-140.93	0/0:126:125,1:125:4417:1:36:0,-34.3315,-394.108	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:90:90,0:90:3182:0:0:0,-27.0927,-286.606	0/0:31:31,0:31:1098:0:0:0,-9.33193,-99.1298	0/1:21:11,6:11:395:6:212:-13.9771,0,-30.448	0/1:94:52,41:52:1816:41:1460:-103.34,0,-135.364	0/1:53:31,22:31:1070:22:784:-54.9293,0,-80.6519	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:1,6:1:25:6:212:-17.3176,0,-0.392653	0/0:60:59,0:59:2076:0:0:0,-17.7608,-186.75	0/1:95:46,48:46:1604:48:1682:-123.007,0,-115.989	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:209:116,92:116:4075:92:3266:-231.187,0,-303.966	0/1:196:102,91:102:3561:91:3268:-235.937,0,-262.299	0/1:59:38,21:38:1314:21:743:-49.4326,0,-100.795	0/0:67:66,0:66:2318:0:0:0,-19.868,-208.52	0/1:181:102,77:102:3561:77:2735:-192.149,0,-266.458	0/0:93:91,1:91:3215:1:36:0,-24.4563,-285.975	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/0:51:51,0:51:1803:0:0:0,-15.3525,-162.551	0/0:76:76,0:76:2675:0:0:0,-22.8783,-240.997	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5029	0/0:88:88,0:88:3126:0:0:0,-26.4906,-281.567	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.425	0/0:143:143,0:143:5013:0:0:0,-43.0473,-451.324	0/1:76:47,29:47:1648:29:1040:-71.0361,0,-125.727	0/0:43:42,0:42:1462:0:0:0,-12.6433,-131.513	0/1:110:60,50:60:2134:50:1785:-127.818,0,-159.215	0/1:7:3,4:3:95:4:144:-11.2064,0,-6.75712	0/1:86:46,40:46:1603:40:1436:-103.649,0,-118.669	0/0:80:80,0:80:2826:0:0:0,-24.0824,-254.581	0/0:125:125,0:125:4391:0:0:0,-37.6287,-395.365	0/1:102:44,58:44:1545:58:2062:-155.145,0,-108.634	0/0:57:57,0:57:2001:0:0:0,-17.1587,-180.362	0/0:56:56,0:56:1971:0:0:0,-16.8577,-177.664	0/1:154:81,73:81:2817:73:2595:-187.44,0,-207.409	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/1:75:47,28:47:1615:28:981:-66.0238,0,-123.057	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0713	0/1:107:43,64:43:1488:64:2270:-172.351,0,-101.999	0/1:76:31,45:31:1082:45:1567:-118.44,0,-74.8089	0/0:94:94,0:94:3301:0:0:0,-28.2968,-297.311	0/0:102:102,0:102:3598:0:0:0,-30.7051,-324.031
chr11	5835530	.	G	A	57467.9	PASS	AB=0.555481;ABP=161.796;AC=33;AF=0.175532;AN=188;AO=3321;CIGAR=1X;DP=16090;DPB=16090;DPRA=1.21156;EPP=7205.79;EPPR=27702.3;GTI=4;LEN=1;MEANALT=1.06667;MQM=30.7206;MQMR=32.7086;NS=94;NUMALT=1;ODDS=0.72441;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118116;QR=446687;RO=12760;RPL=1825;RPP=73.7849;RPPR=62.2493;RPR=1496;RUN=1;SAF=1826;SAP=74.648;SAR=1495;SRF=6674;SRP=61.8484;SRR=6086;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:84:33,51:33:1135:51:1825:-104.995,0,-61.4651	0/1:230:111,119:111:3923:119:4236:-226.755,0,-222.165	0/1:236:96,139:96:3356:139:4931:-281.153,0,-183.57	0/0:402:401,0:401:14062:0:0:0,-120.713,-1124.84	0/0:111:111,0:111:3883:0:0:0,-33.4143,-299.666	0/0:62:62,0:62:2203:0:0:0,-18.6639,-160.629	0/0:143:142,1:142:5004:1:36:0,-39.7483,-380.936	0/1:270:122,148:122:4250:148:5254:-287.862,0,-235.668	0/0:208:208,0:208:7262:0:0:0,-62.6142,-551.352	0/0:161:161,0:161:5631:0:0:0,-48.4658,-439.191	0/0:122:122,0:122:4201:0:0:0,-36.7257,-332.443	0/1:228:123,105:123:4248:105:3753:-200.776,0,-258.688	0/1:158:83,75:83:2928:75:2665:-142.299,0,-171.695	0/0:110:110,0:110:3854:0:0:0,-33.1133,-292.549	0/0:185:185,0:185:6481:0:0:0,-55.6905,-514.421	0/0:115:115,0:115:4023:0:0:0,-34.6184,-313.277	0/0:111:111,0:111:3879:0:0:0,-33.4143,-284.304	0/0:108:108,0:108:3737:0:0:0,-32.5112,-278.965	0/0:84:84,0:84:2943:0:0:0,-25.2865,-222.328	0/0:384:384,0:384:13421:0:0:0,-115.596,-1039.92	0/0:333:333,0:333:11675:0:0:0,-100.243,-911.234	0/1:138:41,97:41:1446:97:3450:-220.706,0,-69.6145	0/0:146:146,0:146:5185:0:0:0,-43.9504,-419.842	0/0:130:130,0:130:4563:0:0:0,-39.1339,-347.806	0/0:123:123,0:123:4291:0:0:0,-37.0267,-339.23	0/1:585:263,321:263:9249:321:11419:-659.765,0,-524.312	0/0:409:408,0:408:14315:0:0:0,-122.82,-1119.64	0/0:110:110,0:110:3826:0:0:0,-33.1133,-293.803	0/1:472:207,265:207:7255:265:9458:-578.744,0,-432.286	0/0:135:129,6:129:4563:6:212:0,-25.6984,-340.608	0/0:163:162,1:162:5706:1:36:0,-45.7689,-444.221	0/1:2:1,1:1:36:1:36:-2.52158,0,-2.52158	0/0:10:10,0:10:360:0:0:0,-3.0103,-28.9917	0/0:4:4,0:4:140:0:0:0,-1.20412,-11.1135	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.5575	0/1:12:5,7:5:176:7:252:-15.3185,0,-9.79506	0/0:460:457,3:457:15867:3:108:0,-129.237,-1223.41	0/0:241:241,0:241:8478:0:0:0,-72.5482,-634.788	0/1:116:59,57:59:2059:57:2008:-110.387,0,-117.776	0/0:4:4,0:4:135:0:0:0,-1.20412,-10.1298	0/1:193:87,106:87:3077:106:3787:-220.9,0,-178.653	0/1:61:31,30:31:1083:30:1076:-60.4029,0,-69.0473	0/0:240:239,1:239:8426:1:36:0,-69.5986,-654.53	0/0:170:170,0:170:5913:0:0:0,-51.1751,-445.417	0/0:160:160,0:160:5557:0:0:0,-48.1648,-430.856	0/1:138:54,84:54:1875:84:2966:-186.393,0,-108.316	0/0:160:160,0:160:5645:0:0:0,-48.1648,-423.195	0/0:295:295,0:295:10309:0:0:0,-88.8038,-820.066	0/0:172:172,0:172:6071:0:0:0,-51.7772,-477.765	0/1:301:113,188:113:3974:188:6683:-390.962,0,-226.587	0/0:252:252,0:252:8868:0:0:0,-75.8596,-680.799	0/1:7:6,1:6:216:1:32:-0.473667,0,-14.9667	0/1:231:101,130:101:3569:130:4593:-254.309,0,-201.588	0/0:42:42,0:42:1480:0:0:0,-12.6433,-117.647	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.2553	0/1:293:131,162:131:4586:162:5776:-341.014,0,-273.424	0/1:106:44,62:44:1554:62:2213:-141.42,0,-89.337	0/1:6:3,3:3:104:3:108:-5.6099,0,-6.38705	0/0:15:15,0:15:523:0:0:0,-4.51545,-40.1796	0/0:118:117,1:117:4075:1:36:0,-32.8729,-317.21	0/1:208:93,115:93:3266:115:4090:-244.71,0,-194.838	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.89903	0/0:296:294,0:294:10356:0:0:0,-88.5028,-786.574	0/0:272:271,1:271:9498:1:36:0,-80.7814,-748.658	0/0:137:132,4:132:4607:4:135:0,-31.1973,-343.601	0/0:136:136,0:136:4773:0:0:0,-40.9401,-377.982	0/0:234:234,0:234:8251:0:0:0,-70.441,-646.856	0/1:182:52,130:52:1843:130:4624:-296.359,0,-92.368	0/0:61:61,0:61:2120:0:0:0,-18.3628,-165.905	0/0:123:123,0:123:4312:0:0:0,-37.0267,-323.302	0/1:122:65,57:65:2252:57:2005:-108.562,0,-135.738	0/0:26:26,0:26:907:0:0:0,-7.82678,-68.5613	0/0:150:149,1:149:5237:1:36:0,-42.1737,-396.228	0/0:164:164,0:164:5764:0:0:0,-49.3689,-437.587	0/0:227:226,0:226:7909:0:0:0,-68.0328,-611.292	0/0:312:311,1:311:10868:1:36:0,-90.6223,-844.793	0/1:200:114,86:114:4056:86:3037:-156.791,0,-247.156	0/1:291:131,160:131:4557:160:5707:-318.695,0,-256.914	0/1:22:11,11:11:379:11:396:-22.7377,0,-23.1554	0/0:211:210,1:210:7332:1:36:0,-60.8687,-559.251	0/0:194:193,1:193:6786:1:36:0,-55.4191,-500.987	0/0:268:268,0:268:9499:0:0:0,-80.676,-744.405	0/0:175:174,0:174:5928:0:0:0,-52.3792,-457.625	0/1:150:58,92:58:2034:92:3275:-201.189,0,-114.956	0/1:153:76,77:76:2653:77:2705:-151.435,0,-155.221	0/1:369:171,198:171:5921:198:7070:-415.414,0,-352.085	0/0:84:84,0:84:2904:0:0:0,-25.2865,-217.905	0/0:197:197,0:197:6858:0:0:0,-59.3029,-519.876	0/0:178:178,0:178:6140:0:0:0,-53.5833,-460.836	0/1:54:23,31:23:802:31:1116:-64.6461,0,-47.5116	0/1:148:62,86:62:2160:86:3052:-181.131,0,-125.509	0/1:173:68,105:68:2329:105:3739:-228.416,0,-130.572	0/0:227:227,0:227:7956:0:0:0,-68.3338,-630.601	0/0:269:269,0:269:9344:0:0:0,-80.9771,-731.033
chr11	6025673	.	TTGAG	CTGAG,CTGAA	179679	PASS	AB=0.47787,0.510944;ABP=20.5025,7.28776;AC=144,42;AF=0.774194,0.225806;AN=186;AO=6573,2111;CIGAR=1X4M,1X3M1X;DP=8778;DPB=8795;DPRA=0,1.25577;EPP=14276.1,4586.99;EPPR=9.52472;GTI=0;LEN=1,5;MEANALT=2.35484,3.1;MQM=59.9878,59.9683;MQMR=60;NS=93;NUMALT=2;ODDS=2.36653;PAIRED=0,0;PAIREDR=0;PAO=39,39;PQA=1345.5,1345.5;PQR=0;PRO=7;QA=231004,70366;QR=100;RO=3;RPL=6573,2111;RPP=14276.1,4586.99;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=6573,2111;SAP=14276.1,4586.99;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:65:0,65,0:0:0:65,0:2301,0:-207.35,-19.567,0,-207.35,-19.567,-207.35	1/2:59:0,28,31:0:0:28,31:978,1047:-164.761,-85.2022,-76.7733,-79.9023,0,-70.5704	1/1:127:0,125,1:0:0:125,1:4427,35:-398.243,-37.6288,0,-395.396,-34.7913,-395.095	1/2:257:0,129,128:0:0:129,128:4530,4322:-719.218,-350.524,-311.691,-368.919,0,-330.387	1/1:112:0,112,0:0:0:112,0:3929,0:-353.803,-33.7154,0,-353.803,-33.7154,-353.803	1/1:51:0,50,0:0:0:50,0:1770,0:-159.349,-15.0515,0,-159.349,-15.0515,-159.349	1/1:117:0,116,0:0:0:116,0:4054,0:-364.632,-34.9195,0,-364.632,-34.9195,-364.632	1/1:128:0,126,0:0:0:126,0:4478,0:-402.895,-37.9298,0,-402.895,-37.9298,-402.895	1/2:82:0,32,48:0:0:32,48:1103,1601:-219.226,-129.626,-119.993,-89.6419,0,-75.1924	1/1:68:0,67,0:0:0:67,0:2326,0:-209.236,-20.169,0,-209.236,-20.169,-209.236	1/1:76:1,75,0:1:36:75,0:2632,0:-233.675,-19.49,0,-233.976,-22.5773,-236.914	1/2:112:1,47,64:1:31:47,64:1606,2134:-300.299,-170.262,-158.602,-127.877,0,-111.099	1/2:99:0,45,54:0:0:45,54:1594,1817:-277.35,-147.494,-133.947,-130.144,0,-113.888	1/1:75:0,75,0:0:0:75,0:2655,0:-239.078,-22.5773,0,-239.078,-22.5773,-239.078	1/1:66:0,66,0:0:0:66,0:2292,0:-206.539,-19.868,0,-206.539,-19.868,-206.539	1/1:50:0,50,0:0:0:50,0:1754,0:-158.083,-15.0515,0,-158.083,-15.0515,-158.083	1/1:47:0,46,0:0:0:46,0:1590,0:-143.112,-13.8474,0,-143.112,-13.8474,-143.112	1/2:41:0,18,20:0:0:18,20:636,685:-107.452,-55.6476,-50.2291,-51.8477,0,-45.8271	1/2:30:0,14,15:0:0:14,15:496,516:-82.4078,-41.9945,-37.7801,-40.5029,0,-35.9875	1/2:267:0,126,140:0:0:126,140:4430,4687:-740.114,-379.514,-341.584,-360.584,0,-318.44	1/1:155:0,154,0:0:0:154,0:5451,0:-490.241,-46.3586,0,-490.241,-46.3586,-490.241	1/2:224:0,75,143:0:0:75,143:2631,4705:-594.409,-380.293,-357.716,-214.181,0,-171.134	1/2:131:0,66,65:0:0:66,65:2319,2180:-365.657,-176.899,-157.031,-189.101,0,-169.534	1/2:46:0,25,21:0:0:25,21:871,705:-128.103,-57.2699,-49.7442,-71.0059,0,-64.6842	1/1:57:0,57,0:0:0:57,0:2001,0:-180.36,-17.1587,0,-180.36,-17.1587,-180.36	1/2:220:0,113,105:0:0:113,105:3985,3460:-604.214,-279.729,-245.712,-324.539,0,-292.931	1/1:141:0,141,0:0:0:141,0:4944,0:-445.049,-42.4452,0,-445.049,-42.4452,-445.049	1/1:33:0,33,0:0:0:33,0:1157,0:-104.377,-9.93399,0,-104.377,-9.93399,-104.377	1/1:300:0,295,0:0:0:295,0:10424,0:-937.795,-88.8039,0,-937.795,-88.8039,-937.795	1/2:124:0,61,62:0:0:61,62:2109,2037:-335.929,-164.556,-146.193,-171.331,0,-152.667	1/1:77:0,77,0:0:0:77,0:2700,0:-243.064,-23.1793,0,-243.064,-23.1793,-243.064	1/2:4:0,2,2:0:0:2,2:72,71:-12.0173,-6.14,-5.53794,-6.23466,0,-5.6326	1/1:17:0,17,0:0:0:17,0:603,0:-54.5429,-5.11751,0,-54.5429,-5.11751,-54.5429	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:203:0,112,88:0:0:112,88:3919,2961:-558.754,-239.903,-206.188,-318.856,0,-292.366	1/2:80:0,32,47:0:0:32,47:1144,1581:-221.226,-127.94,-118.307,-93.1499,0,-79.0015	1/1:52:1,50,0:1:33:50,0:1732,0:-152.845,-12.3983,0,-153.146,-15.0515,-155.814	.:.:.:.:.:.:.:.	1/1:167:0,166,0:0:0:166,0:5873,0:-528.424,-49.971,0,-528.424,-49.971,-528.424	1/1:45:0,45,0:0:0:45,0:1561,0:-140.776,-13.5464,0,-140.776,-13.5464,-140.776	1/1:161:0,161,0:0:0:161,0:5629,0:-506.678,-48.4658,0,-506.678,-48.4658,-506.678	1/1:39:0,39,0:0:0:39,0:1333,0:-120.263,-11.7402,0,-120.263,-11.7402,-120.263	1/1:56:0,56,0:0:0:56,0:1964,0:-177.033,-16.8577,0,-177.033,-16.8577,-177.033	1/2:126:0,51,70:0:0:51,70:1755,2322:-330.387,-187.852,-172.499,-142.561,0,-121.489	1/2:188:0,90,97:0:0:90,97:3178,3200:-517.445,-258.64,-231.547,-258.777,0,-229.577	1/1:182:0,175,1:0:0:175,1:6166,28:-554.733,-52.6803,0,-552.514,-50.4658,-552.213	1/1:77:0,77,0:0:0:77,0:2737,0:-246.572,-23.1793,0,-246.572,-23.1793,-246.572	1/2:52:0,29,22:0:0:29,22:1036,752:-145.539,-61.0625,-52.3326,-84.5125,0,-77.8899	1/1:151:0,148,0:0:0:148,0:5221,0:-469.788,-44.5524,0,-469.788,-44.5524,-469.788	1/2:5:0,2,3:0:0:2,3:72,104:-14.6802,-8.8,-8.19794,-6.23466,0,-5.33157	1/1:154:0,152,2:0:0:152,2:5320,71:-478.556,-45.7566,0,-472.771,-39.6467,-472.169	1/1:77:0,76,0:0:0:76,0:2700,0:-242.883,-22.8783,0,-242.883,-22.8783,-242.883	1/2:9:0,7,2:0:0:7,2:239,61:-24.6145,-5.19201,-3.0848,-19.7355,0,-19.1334	1/2:144:0,59,84:0:0:59,84:2077,2845:-399.629,-230.54,-212.78,-168.967,0,-143.68	1/2:36:0,21,15:0:0:21,15:747,492:-100.971,-40.0777,-33.7561,-61.2327,0,-56.7172	1/2:24:0,17,6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chr11	6319333	.	CTTCA	TTTCA,TTTCG	171568	PASS	AB=0.461217,0.53591;ABP=53.0347,45.8982;AC=146,42;AF=0.776596,0.223404;AN=188;AO=5912,2055;CIGAR=1X4M,1X3M1X;DP=7988;DPB=7988.2;DPRA=0,1.16216;EPP=12840.8,4465.39;EPPR=9.52472;GTI=2;LEN=1,5;MEANALT=1.67021,2.22222;MQM=59.9915,59.9864;MQMR=60;NS=94;NUMALT=2;ODDS=0.882962;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,32;PQR=0;PRO=0;QA=211447,72714;QR=102;RO=3;RPL=0,0;RPP=12840.8,4465.39;RPPR=9.52472;RPR=5912,2055;RUN=1,1;SAF=5912,2055;SAP=12840.8,4465.39;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45,0:0:0:45,0:1601,0:-144.378,-13.5464,0,-144.378,-13.5464,-144.378	1/2:66:0,24,42:0:0:24,42:864,1486:-191.889,-121.389,-114.164,-70.8578,0,-58.2146	1/1:72:0,71,0:0:0:71,0:2544,0:-228.949,-21.3731,0,-228.949,-21.3731,-228.949	1/2:242:0,119,123:0:0:119,123:4268,4346:-702.413,-354.294,-318.471,-348.475,0,-311.448	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/1:28:0,28,0:0:0:28,0:989,0:-89.322,-8.42884,0,-89.322,-8.42884,-89.322	1/1:106:0,105,0:0:0:105,0:3745,0:-336.89,-31.6082,0,-336.89,-31.6082,-336.89	1/1:58:0,57,0:0:0:57,0:2025,0:-182.2,-17.1587,0,-182.2,-17.1587,-182.2	1/2:57:0,28,29:0:0:28,29:1008,1028:-166.353,-84.103,-75.6741,-82.6075,0,-73.8776	1/1:67:0,66,0:0:0:66,0:2364,0:-212.806,-19.868,0,-212.806,-19.868,-212.806	1/1:76:0,76,0:0:0:76,0:2717,0:-244.772,-22.8783,0,-244.772,-22.8783,-244.772	1/2:109:0,54,54:0:0:54,54:1928,1920:-313.647,-156.462,-140.206,-157.181,0,-140.926	1/2:97:0,51,46:0:0:51,46:1836,1636:-283.491,-133.68,-118.327,-150.168,0,-136.321	1/1:70:0,70,0:0:0:70,0:2497,0:-224.981,-21.0721,0,-224.981,-21.0721,-224.981	1/1:60:0,60,0:0:0:60,0:2152,0:-193.947,-18.0618,0,-193.947,-18.0618,-193.947	1/1:61:0,61,0:0:0:61,0:2146,0:-193.405,-18.3628,0,-193.405,-18.3628,-193.405	1/1:37:0,37,0:0:0:37,0:1332,0:-120.182,-11.1381,0,-120.182,-11.1381,-120.182	1/2:33:0,16,17:0:0:16,17:572,611:-96.8443,-50.2057,-45.3892,-46.9969,0,-41.8794	1/2:47:0,17,30:0:0:17,30:608,1066:-136.799,-87.2212,-82.1037,-49.9345,0,-40.9036	1/2:211:0,121,89:0:0:121,89:4348,3156:-611.828,-257.116,-220.691,-354.709,0,-327.917	1/1:127:0,127,0:0:0:127,0:4545,0:-409.215,-38.2308,0,-409.215,-38.2308,-409.215	1/2:161:0,42,119:0:0:42,119:1512,4202:-465.917,-342.543,-329.9,-123.731,0,-87.9088	1/2:159:0,100,59:0:0:100,59:3524,2106:-458.956,-172.047,-141.944,-287.264,0,-269.503	1/2:46:0,26,20:0:0:26,20:936,709:-134.491,-58.1149,-50.2881,-76.7327,0,-70.7121	1/1:59:0,58,0:0:0:58,0:2072,0:-186.46,-17.4597,0,-186.46,-17.4597,-186.46	1/2:180:0,80,100:0:0:80,100:2853,3524:-519.519,-286.95,-262.867,-232.604,0,-202.501	1/1:193:0,192,1:0:0:192,1:6873,36:-618.277,-57.7978,0,-615.34,-54.5005,-615.039	1/1:37:0,36,1:0:0:36,1:1281,36:-115.232,-10.8371,0,-112.294,-7.53984,-111.993	1/1:284:0,284,0:0:0:284,0:10173,0:-915.497,-85.4925,0,-915.497,-85.4925,-915.497	1/2:114:0,50,64:0:0:50,64:1800,2250:-330.371,-183.496,-168.445,-147.231,0,-127.965	1/1:212:0,212,0:0:0:212,0:7604,0:-684.396,-63.8184,0,-684.396,-63.8184,-684.396	1/2:6:0,1,5:0:0:1,5:36,179:-17.893,-14.9552,-14.6542,-3.29724,0,-1.79209	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:205:0,97,108:0:0:97,108:3458,3822:-593.54,-311.665,-282.465,-282.23,0,-249.719	1/2:137:0,44,92:0:0:44,92:1584,3231:-392.357,-263.107,-249.862,-129.393,0,-101.698	1/1:50:0,50,0:0:0:50,0:1792,0:-161.562,-15.0515,0,-161.562,-15.0515,-161.562	1/2:6:0,1,5:0:0:1,5:36,172:-17.2528,-14.3127,-14.0117,-3.29724,0,-1.79209	1/1:134:0,134,0:0:0:134,0:4797,0:-431.884,-40.338,0,-431.884,-40.338,-431.884	1/1:41:0,41,0:0:0:41,0:1476,0:-133.136,-12.3422,0,-133.136,-12.3422,-133.136	1/1:114:0,114,0:0:0:114,0:4088,0:-368.105,-34.3174,0,-368.105,-34.3174,-368.105	1/1:61:0,61,0:0:0:61,0:2196,0:-197.905,-18.3628,0,-197.905,-18.3628,-197.905	1/1:48:0,48,0:0:0:48,0:1720,0:-155.086,-14.4494,0,-155.086,-14.4494,-155.086	1/2:71:0,28,43:0:0:28,43:989,1525:-205.139,-124.599,-116.171,-80.8932,0,-67.9489	1/2:110:0,41,69:0:0:41,69:1476,2433:-318.892,-198.456,-186.113,-120.794,0,-100.023	1/1:101:0,101,0:0:0:101,0:3605,0:-324.655,-30.404,0,-324.655,-30.404,-324.655	1/1:96:0,96,0:0:0:96,0:3407,0:-306.574,-28.8989,0,-306.574,-28.8989,-306.574	1/2:89:0,46,43:0:0:46,43:1652,1531:-259.903,-125.139,-111.292,-135.121,0,-122.177	1/1:82:1,81,0:1:36:81,0:2900,0:-257.638,-21.0862,0,-257.939,-24.3834,-260.876	1/2:14:0,12,2:0:0:12,2:428,72:-41.1218,-6.23466,-2.6223,-35.2464,0,-34.6444	1/1:120:0,120,0:0:0:120,0:4293,0:-386.546,-36.1236,0,-386.546,-36.1236,-386.546	1/1:65:0,64,1:0:0:64,1:2292,30:-206.218,-19.2659,0,-203.82,-16.5674,-203.519	1/2:14:0,2,12:0:0:2,12:72,431:-41.3933,-35.5183,-34.9163,-6.23466,0,-2.6223	1/2:161:0,73,88:0:0:73,88:2628,3115:-468.523,-254.089,-232.113,-214.791,0,-188.301	1/2:25:0,13,12:0:0:13,12:468,420:-72.713,-34.52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chr11	6319457	.	A	G	103459	PASS	AB=0.465483;ABP=39.1379;AC=145;AF=0.771277;AN=188;AO=5080;CIGAR=1X;DP=6957;DPB=6957;DPRA=74.7957;EPP=11034.1;EPPR=4050.65;GTI=5;LEN=1;MEANALT=1.05376;MQM=59.9978;MQMR=60;NS=94;NUMALT=1;ODDS=1.11794;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=178473;QR=66689;RO=1872;RPL=0;RPP=11034.1;RPPR=4050.65;RPR=5080;RUN=1;SAF=0;SAP=11034.1;SAR=5080;SRF=0;SRP=4068.01;SRR=1872;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:594:-53.7856,-5.11751,0	0/1:58:32,26:32:1148:26:928:-66.3785,0,-86.1701	1/1:79:0,79:0:0:79:2746:-247.381,-23.7814,0	0/1:178:99,79:99:3528:79:2795:-198.206,0,-264.148	1/1:27:0,27:0:0:27:940:-84.9108,-8.12781,0	1/1:26:0,26:0:0:26:918:-82.9353,-7.82678,0	1/1:85:1,84:1:32:84:3012:-268.111,-22.3882,0	1/1:99:0,99:0:0:99:3489:-314.221,-29.802,0	0/1:65:34,31:34:1205:31:1116:-81.1847,0,-89.1869	1/1:101:0,101:0:0:101:3569:-321.419,-30.404,0	1/1:52:0,52:0:0:52:1828:-164.801,-15.6536,0	0/1:77:38,39:38:1364:39:1375:-100.869,0,-99.8814	0/1:68:31,37:31:1103:37:1303:-97.1005,0,-79.1098	1/1:66:0,66:0:0:66:2301:-207.351,-19.868,0	1/1:76:0,76:0:0:76:2699:-243.155,-22.8783,0	1/1:57:0,57:0:0:57:2005:-180.722,-17.1587,0	1/1:68:0,68:0:0:68:2364:-213.019,-20.47,0	0/1:79:41,38:41:1468:38:1339:-97.0279,0,-108.635	0/1:36:14,22:14:504:22:759:-57.7898,0,-34.861	0/1:92:56,36:56:1995:36:1288:-88.5288,0,-152.129	1/1:110:0,110:0:0:110:3908:-351.915,-33.1133,0	0/1:84:68,16:68:2436:16:557:-25.169,0,-194.209	0/1:65:34,31:34:1203:31:1096:-79.383,0,-89.0081	0/1:122:55,66:55:1972:66:2298:-170.294,0,-140.97	1/1:51:0,51:0:0:51:1801:-162.37,-15.3525,0	0/1:209:108,101:108:3858:101:3551:-256.881,0,-284.5	1/1:31:0,31:0:0:31:1086:-98.0476,-9.33193,0	1/1:34:0,34:0:0:34:1207:-108.935,-10.235,0	1/1:110:0,109:0:0:109:3868:-347.996,-32.8123,0	0/1:91:44,47:44:1575:47:1671:-123.283,0,-114.647	1/1:74:0,74:0:0:74:2613:-235.419,-22.2762,0	0/1:5:1,4:1:36:4:127:-10.2393,0,-2.09312	1/1:4:0,4:0:0:4:131:-12.1135,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:249:127,122:127:4492:122:4294:-311.685,0,-329.496	0/1:118:61,57:61:2157:57:1973:-142.319,0,-158.874	1/1:46:0,46:0:0:46:1612:-145.366,-13.8474,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:135:0,135:0:0:135:4779:-430.268,-40.6391,0	1/1:20:1,19:1:27:19:655:-56.5713,-3.32082,0	1/1:149:0,148:0:0:148:5281:-475.067,-44.5524,0	1/1:78:0,78:0:0:78:2710:-244.143,-23.4803,0	1/1:60:0,60:0:0:60:2085:-187.917,-18.0618,0	0/1:75:45,30:45:1611:30:1057:-72.8617,0,-122.702	0/1:85:35,50:35:1241:50:1752:-132.372,0,-86.405	1/1:140:2,138:2:72:138:4859:-430.627,-35.3075,0	1/1:97:0,97:0:0:97:3442:-309.994,-29.1999,0	0/1:67:40,27:40:1410:27:950:-65.6444,0,-107.027	1/1:140:0,140:0:0:140:4955:-446.103,-42.1442,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:86:0,86:0:0:86:3004:-270.589,-25.8886,0	1/1:11:0,11:0:0:11:364:-33.0784,-3.31133,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:60:36,24:36:1292:24:864:-60.0208,0,-98.522	0/1:256:134,122:134:4754:122:4276:-307.958,0,-350.955	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	1/1:47:0,47:0:0:47:1660:-149.686,-14.1484,0	0/1:104:55,49:55:1976:49:1728:-124.498,0,-146.808	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:101:61,40:61:2177:40:1394:-95.3498,0,-165.79	0/1:128:72,55:72:2547:55:1938:-136.105,0,-190.888	0/1:50:19,31:19:680:31:1092:-83.5363,0,-46.4777	1/1:49:0,49:0:0:49:1699:-153.191,-14.7505,0	0/1:122:66,56:66:2363:56:1956:-139.588,0,-176.202	1/1:36:0,36:0:0:36:1281:-115.592,-10.8371,0	0/1:16:5,11:5:167:11:392:-30.8036,0,-10.5419	1/1:67:0,67:0:0:67:2340:-210.859,-20.169,0	1/1:85:0,85:0:0:85:2933:-264.204,-25.5876,0	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	1/1:74:1,73:1:36:73:2584:-229.21,-18.6779,0	1/1:49:2,47:2:72:47:1637:-140.777,-7.91375,0	1/1:103:0,103:0:0:103:3640:-327.805,-31.0061,0	0/1:71:37,34:37:1328:34:1188:-85.849,0,-98.4491	1/1:72:0,72:0:0:72:2535:-228.4,-21.6742,0	0/1:60:31,29:31:1112:29:1036:-75.4921,0,-82.3295	0/1:8:5,3:5:176:3:99:-6.82834,0,-13.7768	0/1:69:35,34:35:1251:34:1207:-88.1642,0,-92.1232	1/1:48:0,48:0:0:48:1674:-150.942,-14.4494,0	1/1:182:0,182:0:0:182:6419:-577.805,-54.7875,0	0/1:131:78,53:78:2783:53:1863:-128.513,0,-211.276	1/1:72:0,72:0:0:72:2513:-226.421,-21.6742,0	1/1:100:0,99:0:0:99:3424:-308.021,-29.802,0	0/1:174:87,87:87:3096:87:3006:-218.392,0,-226.49	1/1:43:0,43:0:0:43:1473:-132.858,-12.9443,0	0/1:84:38,46:38:1343:46:1592:-118.28,0,-95.8828	1/1:60:0,60:0:0:60:2108:-189.987,-18.0618,0	1/1:35:0,35:0:0:35:1222:-110.282,-10.5361,0	0/1:89:46,43:46:1633:43:1468:-105.614,0,-120.465	0/1:86:59,27:59:2098:27:928:-57.9406,0,-163.2	1/1:76:0,76:0:0:76:2649:-238.655,-22.8783,0	1/1:129:0,129:0:0:129:4493:-404.547,-38.8329,0
chr11	6319575	.	T	A	195892	PASS	AB=0.483095;ABP=13.9495;AC=146;AF=0.776596;AN=188;AO=7224;CIGAR=1X;DP=9517;DPB=9517;DPRA=0;EPP=44.1613;EPPR=3.46925;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.959;MQMR=59.9991;NS=94;NUMALT=1;ODDS=1.4775;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=257717;QR=81518;RO=2290;RPL=7224;RPP=15689.7;RPPR=4949.66;RPR=0;RUN=1;SAF=3797;SAP=44.1613;SAR=3427;SRF=1155;SRP=3.3896;SRR=1135;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1707:-153.915,-14.4494,0	0/1:137:77,60:77:2740:60:2156:-153.066,0,-205.6	1/1:165:0,165:0:0:165:5872:-528.485,-49.67,0	0/1:251:129,122:129:4523:122:4340:-315.217,0,-331.681	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:76:1,75:1:36:75:2640:-234.246,-19.28,0	1/1:173:0,172:0:0:172:6097:-548.201,-51.7772,0	0/1:98:50,48:50:1767:48:1705:-124.232,0,-129.812	1/1:121:0,121:0:0:121:4302:-387.357,-36.4246,0	1/1:85:0,85:0:0:85:3021:-272.12,-25.5876,0	0/1:168:82,86:82:2919:86:3057:-224.748,0,-212.372	0/1:159:74,85:74:2652:85:3023:-223.945,0,-191.062	1/1:115:0,115:0:0:115:4111:-370.174,-34.6185,0	1/1:164:1,163:1:36:163:5860:-523.91,-45.7706,0	1/1:132:0,132:0:0:132:4691:-422.354,-39.736,0	1/1:109:0,109:0:0:109:3900:-351.194,-32.8123,0	0/1:104:66,38:66:2368:38:1364:-91.7536,0,-182.071	0/1:68:39,28:39:1391:28:1000:-69.7866,0,-104.959	0/1:153:69,84:69:2464:84:2997:-223.905,0,-175.957	1/1:161:1,160:1:36:160:5724:-511.679,-44.8676,0	0/1:38:26,12:26:917:12:432:-27.7821,0,-71.4055	0/1:109:57,52:57:2018:52:1851:-134.057,0,-149.08	0/1:43:20,23:20:701:23:820:-61.1782,0,-50.4674	1/1:63:1,62:1:36:62:2224:-196.826,-15.3666,0	0/1:187:99,88:99:3535:88:3143:-226.803,0,-262.067	1/1:187:1,186:1:36:186:6629:-593.089,-52.6943,0	1/1:72:0,72:0:0:72:2556:-230.289,-21.6742,0	1/1:146:1,145:1:36:145:5166:-461.482,-40.3521,0	0/1:79:34,45:34:1201:45:1592:-119.789,0,-84.6123	1/1:101:0,101:0:0:101:3609:-325.014,-30.404,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:6:0,6:0:0:6:210:-19.2417,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:336:187,149:187:6682:149:5317:-377.518,0,-500.311	0/1:77:40,37:40:1432:37:1332:-97.0031,0,-105.998	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:115:0,115:0:0:115:4132:-372.062,-34.6185,0	1/1:44:0,44:0:0:44:1571:-141.681,-13.2453,0	1/1:141:0,141:0:0:141:5045:-454.195,-42.4452,0	1/1:132:0,132:0:0:132:4732:-425.548,-39.736,0	1/1:130:0,130:0:0:130:4664:-419.918,-39.1339,0	0/1:83:31,52:31:1094:52:1864:-143.053,0,-73.7828	0/1:85:46,39:46:1639:39:1379:-98.8204,0,-122.21	1/1:117:3,114:3:100:114:4049:-355.267,-25.8901,0	1/1:78:0,78:0:0:78:2795:-251.789,-23.4803,0	0/1:114:61,53:61:2161:53:1896:-136.601,0,-160.438	1/1:70:0,70:0:0:70:2503:-225.522,-21.0721,0	0/1:13:7,6:7:235:6:216:-15.8771,0,-17.5646	1/1:117:1,116:1:36:116:4146:-369.724,-31.6222,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:102:56,46:56:2012:46:1648:-117.903,0,-150.648	0/1:147:64,83:64:2273:83:2963:-222.651,0,-160.579	0/1:4:3,1:3:104:1:27:-1.49566,0,-8.49869	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	1/1:81:0,81:0:0:81:2884:-259.762,-24.3834,0	0/1:142:58,84:58:2084:84:3003:-227.755,0,-145.084	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:141:67,74:67:2387:74:2648:-196.121,0,-172.641	0/1:127:53,73:53:1892:73:2592:-195.238,0,-132.269	0/1:86:48,38:48:1716:38:1351:-96.001,0,-128.837	1/1:64:0,64:0:0:64:2229:-200.863,-19.2659,0	0/1:180:98,82:98:3461:82:2923:-209.12,0,-257.516	1/1:110:2,108:2:72:108:3868:-341.478,-26.2766,0	0/1:57:29,28:29:1040:28:984:-71.7147,0,-76.7557	1/1:53:0,53:0:0:53:1867:-168.306,-15.9546,0	1/1:152:0,152:0:0:152:5432:-489.01,-45.7566,0	0/1:16:10,6:10:352:6:216:-14.974,0,-27.2017	1/1:69:0,69:0:0:69:2456:-221.295,-20.7711,0	1/1:83:1,82:1:36:82:2932:-260.511,-21.3872,0	1/1:188:0,188:0:0:188:6662:-599.662,-56.5936,0	0/1:111:62,49:62:2207:49:1755:-124.819,0,-165.48	1/1:126:0,126:0:0:126:4475:-402.921,-37.9298,0	0/1:118:64,54:64:2269:54:1936:-138.995,0,-168.95	0/1:15:10,5:10:360:5:176:-11.6696,0,-28.2289	0/1:125:63,62:63:2217:62:2224:-162.795,0,-162.165	1/1:90:0,90:0:0:90:3199:-288.134,-27.0927,0	1/1:141:1,140:1:36:140:4992:-445.827,-38.847,0	0/1:135:75,60:75:2684:60:2152:-153.308,0,-201.166	1/1:105:0,105:0:0:105:3746:-337.34,-31.6082,0	1/1:160:0,160:0:0:160:5716:-514.552,-48.1648,0	0/1:229:114,115:114:4078:115:4111:-301.239,0,-298.269	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	0/1:118:67,51:67:2388:51:1806:-127.298,0,-179.656	1/1:122:0,122:0:0:122:4355:-392.125,-36.7257,0	1/1:79:0,79:0:0:79:2832:-255.109,-23.7814,0	0/1:105:44,61:44:1571:61:2169:-163.852,0,-110.073	0/1:126:85,41:85:3056:41:1476:-95.2064,0,-237.339	1/1:92:0,92:0:0:92:3283:-295.69,-27.6948,0	1/1:224:0,224:0:0:224:8013:-721.191,-67.4307,0
chr11	6684362	.	ATCAG	TTCAA,ATCAA	46276.9	PASS	AB=0.532394,0.464789;ABP=12.7177,14.4793;AC=135,47;AF=0.741758,0.258242;AN=182;AO=1722,497;CIGAR=1X3M1X,4M1X;DP=2226;DPB=2226;DPRA=24.7222,0.926131;EPP=3647.35,1039.24;EPPR=5.18177;GTI=3;LEN=5,1;MEANALT=1.57778,2.04255;MQM=54.8386,59.7304;MQMR=60;NS=91;NUMALT=2;ODDS=0.484201;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=59497,17516;QR=36;RO=1;RPL=1711,492;RPP=3647.35,1039.24;RPPR=5.18177;RPR=11,5;RUN=1,1;SAF=1722,497;SAP=3742.29,1082.23;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,11,14:0:0:11,14:383,504:-72.5942,-41.4837,-38.1723,-31.4636,0,-27.2492	1/2:7:0,4,3:0:0:4,3:133,100:-18.5442,-7.77821,-6.57409,-11.0855,0,-10.1824	1/2:28:0,12,16:0:0:12,16:406,560:-78.7939,-45.9123,-42.2999,-33.2247,0,-28.4082	1/1:18:0,18,0:0:0:18,0:629,0:-56.8776,-5.41854,0,-56.8776,-5.41854,-56.8776	1/1:6:0,6,0:0:0:6,0:203,0:-18.5881,-1.80618,0,-18.5881,-1.80618,-18.5881	1/1:17:0,17,0:0:0:17,0:608,0:-54.998,-5.11751,0,-54.998,-5.11751,-54.998	1/1:25:0,25,0:0:0:25,0:833,0:-75.2188,-7.52575,0,-75.2188,-7.52575,-75.2188	1/2:26:0,14,12:0:0:14,12:485,428:-74.6179,-35.2431,-31.0287,-39.7265,0,-36.1141	1/2:24:0,10,14:0:0:10,14:353,504:-70.1968,-41.4837,-38.4734,-29.0687,0,-24.8542	1/2:14:0,10,4:0:0:10,4:319,136:-37.026,-11.3714,-8.36112,-25.9884,0,-24.7843	1/2:19:0,11,8:0:0:11,8:368,288:-53.6153,-23.8592,-20.5478,-30.1052,0,-27.6969	1/1:50:0,50,0:0:0:50,0:1734,0:-156.209,-15.0515,0,-156.209,-15.0515,-156.209	1/2:34:0,24,10:0:0:24,10:825,352:-95.9342,-29.0079,-21.7832,-67.2756,0,-64.2653	1/2:10:0,2,8:0:0:2,8:72,288:-29.7273,-23.8592,-23.2571,-6.22762,0,-3.81938	1/1:23:0,22,0:0:0:22,0:777,0:-69.8271,-6.62266,0,-69.8271,-6.62266,-69.8271	1/1:22:0,22,0:0:0:22,0:783,0:-70.7245,-6.62266,0,-70.7245,-6.62266,-70.7245	1/2:5:0,2,3:0:0:2,3:67,104:-14.2165,-8.79971,-8.19765,-5.75614,0,-4.85305	1/1:11:0,11,0:0:0:11,0:381,0:-34.5928,-3.31133,0,-34.5928,-3.31133,-34.5928	1/2:9:0,5,4:0:0:5,4:178,144:-26.5993,-12.1095,-10.6043,-14.8477,0,-13.6436	1/2:29:1,11,17:1:36:11,17:378,563:-72.9012,-42.5294,-42.1571,-27.7139,0,-25.5352	1/2:41:0,24,17:0:0:24,17:847,581:-116.398,-47.4916,-40.2669,-69.2521,0,-64.1346	1/1:42:0,42,0:0:0:42,0:1436,0:-129.426,-12.6433,0,-129.426,-12.6433,-129.426	1/2:31:0,17,14:0:0:17,14:586,496:-88.3153,-40.7598,-35.6423,-47.9051,0,-43.6907	1/1:17:0,17,0:0:0:17,0:598,0:-54.0975,-5.11751,0,-54.0975,-5.11751,-54.0975	1/2:33:0,15,18:0:0:15,18:510,644:-94.1907,-52.8721,-48.3566,-41.6664,0,-36.2479	1/1:67:0,67,0:0:0:67,0:2301,0:-207.177,-20.169,0,-207.177,-20.169,-207.177	1/2:40:0,28,12:0:0:28,12:953,428:-112.476,-35.2464,-26.8176,-77.5808,0,-73.9684	1/2:8:0,3,5:0:0:3,5:108,176:-23.485,-14.6799,-13.7768,-9.1617,0,-7.65655	1/2:56:0,31,25:0:0:31,25:1063,872:-157.48,-71.2685,-61.9365,-86.557,0,-79.0313	1/2:16:0,12,4:0:0:12,4:406,144:-44.9802,-12.1095,-8.49714,-33.225,0,-32.0209	1/2:34:0,22,12:0:0:22,12:759,413:-95.475,-33.8748,-27.2521,-61.9444,0,-58.332	1/1:4:0,4,0:0:0:4,0:132,0:-12.0859,-1.20412,0,-12.0859,-1.20412,-12.0859	1/1:5:0,5,0:0:0:5,0:179,0:-16.444,-1.50515,0,-16.444,-1.50515,-16.444	1/1:1:0,1,0:0:0:1,0:36,0:-3.59457,-0.30103,0,-3.59457,-0.30103,-3.59457	1/2:4:0,3,1:0:0:3,1:107,36:-12.0077,-3.29724,-2.39415,-9.0694,0,-8.76837	1/1:5:0,5,0:0:0:5,0:174,0:-15.9874,-1.50515,0,-15.9874,-1.50515,-15.9874	1/2:88:0,41,47:0:0:41,47:1416,1668:-251.189,-136.255,-123.912,-115.284,0,-101.135	1/1:37:0,37,0:0:0:37,0:1261,0:-113.69,-11.1381,0,-113.69,-11.1381,-113.69	1/2:13:0,8,4:0:0:8,4:267,144:-33.3254,-11.75,-9.34173,-21.5685,0,-20.3644	.:.:.:.:.:.:.:.	1/2:20:0,11,9:0:0:11,9:380,324:-57.6327,-26.7966,-23.4853,-31.1892,0,-28.48	1/1:12:0,12,0:0:0:12,0:418,0:-37.9183,-3.61236,0,-37.9183,-3.61236,-37.9183	1/2:36:0,20,16:0:0:20,16:670,568:-100.835,-46.6354,-40.6148,-54.546,0,-49.7295	1/2:14:0,7,7:0:0:7,7:247,252:-41.0066,-20.9184,-18.8112,-20.4443,0,-18.3371	1/1:27:0,27,0:0:0:27,0:944,0:-85.1876,-8.12781,0,-85.1876,-8.12781,-85.1876	1/1:27:0,27,0:0:0:27,0:931,0:-84.0318,-8.12781,0,-84.0318,-8.12781,-84.0318	1/2:23:0,9,14:0:0:9,14:308,485:-64.7385,-39.7626,-37.0533,-25.3195,0,-21.1051	1/1:35:0,34,0:0:0:34,0:1187,0:-106.681,-10.235,0,-106.681,-10.235,-106.681	1/1:22:0,21,0:0:0:21,0:733,0:-66.0031,-6.32163,0,-66.0031,-6.32163,-66.0031	1/2:21:0,14,7:0:0:14,7:479,252:-59.7494,-20.9217,-16.7073,-39.1815,0,-37.0743	1/1:42:0,42,0:0:0:42,0:1460,0:-131.576,-12.6433,0,-131.576,-12.6433,-131.576	.:.:.:.:.:.:.:.	1/1:30:0,30,0:0:0:30,0:1005,0:-90.1272,-9.0309,0,-90.1272,-9.0309,-90.1272	1/2:18:0,12,6:0:0:12,6:424,216:-52.4743,-17.9843,-14.372,-34.8475,0,-33.0413	1/2:4:0,2,2:0:0:2,2:67,72:-11.6436,-6.23466,-5.6326,-5.75614,0,-5.15408	1/2:32:0,21,11:0:0:21,11:737,373:-90.5102,-30.5839,-24.2623,-60.2692,0,-56.9579	1/1:17:0,17,0:0:0:17,0:589,0:-53.2877,-5.11751,0,-53.2877,-5.11751,-53.2877	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:10:0,10,0:0:0:10,0:347,0:-31.5367,-3.0103,0,-31.5367,-3.0103,-31.5367	1/2:18:0,10,8:0:0:10,8:330,288:-50.4975,-23.8592,-20.8489,-26.98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chr11	6745011	.	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139.632
chr11	6901327	.	G	A	162884	PASS	AB=0.512222;ABP=7.68138;AC=145;AF=0.771277;AN=188;AO=5978;CIGAR=1X;DP=7745;DPB=7745;DPRA=27.7491;EPP=77.2225;EPPR=110.198;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9764;MQMR=60;NS=94;NUMALT=1;ODDS=7.92234;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213964;QR=62950;RO=1763;RPL=2763;RPP=77.2225;RPPR=110.198;RPR=3215;RUN=1;SAF=5978;SAP=12984.1;SAR=0;SRF=1763;SRP=3831.32;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1139:-102.819,-9.63296,0	0/1:90:38,52:38:1360:52:1841:-138.876,0,-95.6079	1/1:151:0,151:0:0:151:5401:-486.219,-45.4555,0	0/1:244:113,131:113:4036:131:4674:-347.37,0,-289.978	1/1:78:0,78:0:0:78:2769:-249.451,-23.4803,0	1/1:30:0,29:0:0:29:1040:-93.5931,-8.72987,0	1/1:33:0,33:0:0:33:1179:-106.418,-9.93399,0	1/1:121:0,121:0:0:121:4317:-388.707,-36.4246,0	0/1:86:46,40:46:1639:40:1431:-103.199,0,-121.909	1/1:53:0,53:0:0:53:1892:-170.558,-15.9546,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:97:49,48:49:1748:48:1728:-126.605,0,-128.404	0/1:73:40,33:40:1425:33:1188:-85.2534,0,-106.57	1/1:41:1,40:1:36:40:1440:-126.299,-8.74396,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:29:15,14:15:527:14:504:-36.9682,0,-39.0303	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	0/1:188:81,107:81:2891:107:3825:-287.853,0,-203.832	1/1:157:0,157:0:0:157:5620:-505.922,-47.2617,0	0/1:95:48,47:48:1707:47:1692:-123.969,0,-125.317	0/1:76:41,35:41:1467:35:1251:-90.0168,0,-109.447	0/1:91:42,49:42:1491:49:1741:-129.578,0,-107.09	1/1:85:0,85:0:0:85:3040:-273.83,-25.5876,0	0/1:237:117,120:117:4195:120:4297:-315.563,0,-306.386	1/1:198:0,198:0:0:198:7056:-635.103,-59.6039,0	1/1:31:1,30:1:36:30:1080:-93.915,-5.73366,0	1/1:242:0,242:0:0:242:8684:-781.549,-72.8493,0	0/1:128:65,61:65:2328:61:2187:-158.805,0,-171.49	1/1:91:0,91:0:0:91:3241:-291.883,-27.3937,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:186:77,109:77:2747:109:3900:-295.202,0,-191.481	0/1:104:44,60:44:1576:60:2156:-163,0,-110.824	1/1:43:0,43:0:0:43:1540:-138.891,-12.9443,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:216:0,216:0:0:216:7742:-696.035,-65.0225,0	1/1:16:0,16:0:0:16:557:-50.4556,-4.81648,0	1/1:127:0,127:0:0:127:4560:-410.565,-38.2308,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:97:41,56:41:1472:56:1997:-150.802,0,-103.576	0/1:126:53,72:53:1878:72:2572:-193.741,0,-131.309	1/1:132:0,132:0:0:132:4677:-421.094,-39.736,0	1/1:96:0,96:0:0:96:3432:-309.088,-28.8989,0	0/1:105:44,61:44:1580:61:2180:-164.858,0,-110.883	1/1:129:0,129:0:0:129:4624:-416.323,-38.8329,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:140:0,140:0:0:140:5029:-452.754,-42.1442,0	1/1:48:0,48:0:0:48:1720:-155.085,-14.4494,0	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	0/1:116:46,70:46:1644:70:2500:-190.333,0,-113.329	0/1:38:20,18:20:720:18:648:-47.2127,0,-53.6896	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	1/1:78:0,78:0:0:78:2778:-250.213,-23.4803,0	0/1:115:47,68:47:1679:68:2444:-185.589,0,-116.778	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:170:84,86:84:2991:86:3089:-227.062,0,-218.247	1/1:140:3,137:3:108:137:4908:-431.795,-32.069,0	0/1:70:30,40:30:1080:40:1440:-108.826,0,-76.4412	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:168:87,81:87:3097:81:2916:-212.101,0,-228.384	1/1:147:0,147:0:0:147:5276:-474.974,-44.2514,0	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	1/1:56:1,55:1:36:55:1964:-172.81,-13.2594,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	0/1:21:17,4:17:612:4:140:-6.62295,0,-49.0918	1/1:141:0,141:0:0:141:5049:-454.553,-42.4452,0	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	1/1:75:0,75:0:0:75:2679:-241.354,-22.5773,0	0/1:196:118,78:118:4227:78:2796:-192.878,0,-321.607	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	0/1:103:56,47:56:1995:47:1676:-120.121,0,-148.817	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:108:63,45:63:2251:45:1589:-110.786,0,-170.341	1/1:61:0,61:0:0:61:2168:-195.386,-18.3628,0	1/1:170:0,170:0:0:170:6100:-549.099,-51.1751,0	0/1:43:17,26:17:612:26:936:-71.6152,0,-42.4691	1/1:81:1,80:1:36:80:2876:-255.473,-20.7852,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:105:39,66:39:1383:66:2363:-181.32,0,-93.1599	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:62:43,19:43:1527:19:684:-43.2265,0,-119.058	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	0/1:83:44,39:44:1566:39:1400:-101.314,0,-116.245	0/1:50:31,19:31:1095:19:680:-46.4777,0,-83.8076	1/1:102:0,102:0:0:102:3645:-328.253,-30.7051,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0
chr11	6902373	.	T	A	17761.5	PASS	AB=0.534085;ABP=22.6982;AC=39;AF=0.211957;AN=184;AO=1044;CIGAR=1X;DP=4176;DPB=4176;DPRA=1.24509;EPP=2270.03;EPPR=6494.96;GTI=1;LEN=1;MEANALT=1;MQM=59.5642;MQMR=59.8164;NS=92;NUMALT=1;ODDS=0.694046;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37427;QR=111896;RO=3132;RPL=1044;RPP=2270.03;RPPR=6494.96;RPR=0;RUN=1;SAF=1044;SAP=2270.03;SAR=0;SRF=3132;SRP=6804.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.982	0/1:48:25,23:25:900:23:828:-60.3885,0,-66.8491	0/0:93:93,0:93:3315:0:0:0,-27.9958,-298.43	0/1:123:58,65:58:2073:65:2340:-173.805,0,-149.812	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.172	0/1:46:16,30:16:572:30:1072:-82.7642,0,-37.966	0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8116	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:63:39,24:39:1392:24:864:-59.1177,0,-106.614	0/1:52:23,29:23:819:29:1044:-78.6212,0,-58.378	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:20:12,8:12:432:8:288:-20.232,0,-33.2006	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	0/1:77:30,47:30:1072:47:1692:-129.342,0,-73.4833	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:60:21,39:21:739:39:1400:-108.179,0,-48.7706	0/1:60:32,28:32:1127:28:1004:-72.6141,0,-83.6756	0/1:33:23,10:23:824:10:356:-22.4401,0,-64.5493	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.04	0/1:112:50,62:50:1796:62:2227:-165.982,0,-128.207	0/0:114:114,0:114:4071:0:0:0,-34.3174,-366.577	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:128:128,0:128:4551:0:0:0,-38.5318,-409.759	0/1:74:43,31:43:1540:31:1101:-77.1186,0,-116.357	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/1:94:34,60:34:1220:60:2156:-165.894,0,-81.81	0/1:65:22,43:22:775:43:1540:-119.326,0,-50.5042	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:66:66,0:66:2359:0:0:0,-19.868,-212.568	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.128	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:44:17,27:17:604:27:960:-73.449,0,-41.4453	0/1:54:33,21:33:1184:21:748:-51.3841,0,-90.5429	0/0:45:44,1:44:1576:1:36:0,-9.94807,-138.533	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:51:16,35:16:557:35:1256:-97.9928,0,-35.103	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.109	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.63218	0/0:62:62,0:62:2202:0:0:0,-18.6639,-198.444	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:71:32,39:32:1140:39:1387:-103.368,0,-81.5361	0/1:15:7,8:7:252:8:288:-21.752,0,-18.2506	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.9218	0/1:77:37,40:37:1332:40:1424:-105.188,0,-97.0031	.:.:.:.:.:.:.:.	0/1:70:39,31:39:1400:31:1112:-79.3055,0,-105.227	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.802	0/1:73:29,44:29:1032:44:1576:-120.066,0,-70.9585	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.606	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.038	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.859	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:93:92,1:92:3280:1:36:0,-24.3975,-291.823	0/0:53:53,0:53:1875:0:0:0,-15.9546,-169.028	0/0:64:64,0:64:2287:0:0:0,-19.2659,-206.091	0/1:131:64,67:64:2275:67:2404:-177.182,0,-165.577	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.496	0/1:65:28,37:28:1000:37:1332:-100.602,0,-70.7484	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:48:14,34:14:500:34:1212:-94.9369,0,-30.8867	0/0:67:67,0:67:2387:0:0:0,-20.169,-215.087	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.47	0/1:38:19,19:19:680:19:676:-49.7212,0,-50.09	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:57:31,26:31:1107:26:932:-67.0402,0,-82.7814	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:37:23,14:23:828:14:504:-34.4015,0,-63.706	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:61:26,35:26:936:35:1260:-95.3427,0,-66.1962	0/1:35:13,22:13:468:22:788:-60.7087,0,-31.9236	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:68:68,0:68:2422:0:0:0,-20.47,-218.235
chr11	6913151	.	AGCC	AGCT,GGCT	158509	PASS	AB=0.605752,0.388424;ABP=269.848,300.051;AC=149,37;AF=0.801075,0.198925;AN=186;AO=6143,1081;CIGAR=3M1X,1X2M1X;DP=7267;DPB=7265.25;DPRA=0,1.15135;EPP=13316.3,2350.37;EPPR=5.18177;GTI=3;LEN=1,4;MEANALT=1.89247,2.40909;MQM=59.9868,59.9547;MQMR=60;NS=93;NUMALT=2;ODDS=4.72525;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=220331,38255;QR=36;RO=1;RPL=6140,1081;RPP=13316.3,2350.37;RPPR=5.18177;RPR=3,0;RUN=1,1;SAF=0,0;SAP=13342.4,2350.37;SAR=6143,1081;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:151:0,87,61:0:0:87,61:3127,2185:-433.301,-178.194,-152.004,-255.106,0,-236.743	1/1:102:0,101,0:0:0:101,0:3601,0:-323.936,-30.404,0,-323.936,-30.404,-323.936	1/2:131:0,73,58:0:0:73,58:2613,2065:-381.744,-168.66,-146.685,-213.441,0,-195.981	1/1:78:0,78,0:0:0:78,0:2778,0:-250.259,-23.4803,0,-250.259,-23.4803,-250.259	1/1:87:0,87,0:0:0:87,0:3108,0:-279.945,-26.1896,0,-279.945,-26.1896,-279.945	1/1:106:0,106,0:0:0:106,0:3793,0:-341.566,-31.9092,0,-341.566,-31.9092,-341.566	1/1:213:0,212,1:0:0:212,1:7593,36:-683.046,-63.8184,0,-680.108,-60.5211,-679.807	1/2:57:0,36,21:0:0:36,21:1296,737:-166.083,-60.3299,-49.4928,-106.107,0,-99.7852	1/1:128:0,128,0:0:0:128,0:4593,0:-413.483,-38.5318,0,-413.483,-38.5318,-413.483	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/2:32:0,15,17:0:0:15,17:540,599:-93.1852,-49.1204,-44.6049,-44.4211,0,-39.3036	1/2:35:0,19,16:0:0:19,16:684,568:-102.449,-46.6355,-40.916,-56.1708,0,-51.3543	1/1:62:0,62,0:0:0:62,0:2232,0:-201.144,-18.6639,0,-201.144,-18.6639,-201.144	1/1:30:0,28,0:0:0:28,0:1008,0:-90.6765,-8.42884,0,-90.6765,-8.42884,-90.6765	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/1:55:0,54,0:0:0:54,0:1940,0:-174.624,-16.2556,0,-174.624,-16.2556,-174.624	1/2:47:0,24,22:0:0:24,22:864,783:-134.311,-63.8112,-56.5864,-70.498,0,-63.8754	1/2:15:0,10,5:0:0:10,5:360,178:-44.2404,-14.8636,-11.8533,-29.734,0,-28.2289	1/2:146:0,92,54:0:0:92,54:3300,1891:-423.38,-154.21,-126.515,-269.524,0,-253.268	1/1:100:0,100,0:0:0:100,0:3592,0:-323.485,-30.103,0,-323.485,-30.103,-323.485	1/2:19:0,12,7:0:0:12,7:432,248:-55.809,-20.5564,-16.944,-35.6088,0,-33.5016	1/2:50:0,33,17:0:0:33,17:1180,607:-146.061,-49.844,-39.91,-96.5741,0,-91.4565	1/2:92:0,67,25:0:0:67,25:2404,883:-268.355,-72.2619,-52.0929,-196.447,0,-188.922	1/1:53:0,53,0:0:0:53,0:1900,0:-171.272,-15.9546,0,-171.272,-15.9546,-171.272	1/2:202:0,132,69:0:0:132,69:4736,2407:-582.101,-195.794,-156.058,-386.368,0,-365.597	1/1:192:0,191,0:0:0:191,0:6864,0:-617.466,-57.4967,0,-617.466,-57.4967,-617.466	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/1:193:0,192,0:0:0:192,0:6908,0:-621.532,-57.7978,0,-621.532,-57.7978,-621.532	1/2:109:0,74,33:0:0:74,33:2652,1173:-311.936,-95.6405,-73.3643,-216.348,0,-206.414	1/1:124:0,120,4:0:0:120,4:4312,144:-387.895,-36.1236,0,-376.145,-24.0141,-374.941	.:.:.:.:.:.:.:.	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/2:79:0,48,31:0:0:48,31:1728,1086:-229.718,-88.7158,-74.2664,-141.356,0,-132.024	1/2:151:0,91,58:0:0:91,58:3272,2061:-434.993,-168.043,-140.649,-267.048,0,-249.588	1/1:35:0,35,0:0:0:35,0:1256,0:-113.345,-10.5361,0,-113.345,-10.5361,-113.345	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:170:0,169,0:0:0:169,0:6027,0:-542.252,-50.8741,0,-542.252,-50.8741,-542.252	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:127:0,124,1:0:0:124,1:4426,36:-398.192,-37.3277,0,-395.254,-34.3687,-394.953	1/1:53:0,53,0:0:0:53,0:1900,0:-171.278,-15.9546,0,-171.278,-15.9546,-171.278	1/1:50:0,47,0:0:0:47,0:1692,0:-152.21,-14.1484,0,-152.21,-14.1484,-152.21	1/2:35:0,23,12:0:0:23,12:828,417:-101.818,-34.2493,-27.3256,-67.9204,0,-64.3081	1/2:103:0,69,34:0:0:69,34:2455,1203:-298.419,-98.3409,-77.5698,-200.432,0,-190.197	1/1:171:0,171,0:0:0:171,0:6133,0:-552.066,-51.4761,0,-552.066,-51.4761,-552.066	1/1:70:0,70,0:0:0:70,0:2501,0:-225.336,-21.0721,0,-225.336,-21.0721,-225.336	1/2:191:0,110,81:0:0:110,81:3960,2896:-559.611,-236.493,-203.38,-323.476,0,-299.092	1/1:91:0,91,0:0:0:91,0:3272,0:-294.696,-27.3937,0,-294.696,-27.3937,-294.696	1/2:6:0,5,1:0:0:5,1:180,35:-17.893,-3.1976,-1.69245,-15.0469,0,-14.7459	1/1:147:0,145,2:0:0:145,2:5204,72:-468.138,-43.6494,0,-462.263,-37.4147,-461.661	1/1:91:0,91,0:0:0:91,0:3254,0:-293.079,-27.3937,0,-293.079,-27.3937,-293.079	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:108:0,66,42:0:0:66,42:2376,1491:-315.714,-121.841,-101.973,-194.229,0,-181.586	1/2:26:0,20,6:0:0:20,6:716,215:-76.282,-17.893,-11.8724,-58.7471,0,-56.9409	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-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chr11	6925598	.	A	G	45530.1	PASS	AB=0.509608;ABP=5.97279;AC=40;AF=0.212766;AN=188;AO=1893;CIGAR=1X;DP=8360;DPB=8360;DPRA=1.20408;EPP=1353.41;EPPR=4775.8;GTI=0;LEN=1;MEANALT=1.04;MQM=59.9741;MQMR=59.992;NS=94;NUMALT=1;ODDS=2.71838;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67160;QR=231467;RO=6463;RPL=1480;RPP=1308.98;RPPR=3916.76;RPR=413;RUN=1;SAF=1078;SAP=82.3545;SAR=815;SRF=3591;SRP=176.702;SRR=2872;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:104:59,45:59:2112:45:1612:-114.063,0,-159.042	0/0:82:81,1:81:2903:1:36:0,-22.5979,-259.418	0/1:102:48,54:48:1728:54:1877:-138.499,0,-125.1	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:89:89,0:89:3174:0:0:0,-26.7917,-285.884	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/1:81:47,34:47:1680:34:1224:-86.0836,0,-127.104	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:144:143,1:143:5136:1:36:0,-39.75,-458.781	0/1:160:79,81:79:2836:81:2854:-208.932,0,-207.313	0/1:173:92,81:92:3292:81:2856:-205.2,0,-244.421	0/0:174:174,0:174:6188:0:0:0,-52.3792,-557.02	0/0:132:132,0:132:4736:0:0:0,-39.736,-426.396	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/0:128:128,0:128:4600:0:0:0,-38.5318,-414.162	0/1:110:50,60:50:1769:60:2147:-160.384,0,-126.378	0/1:103:50,53:50:1800:53:1887:-139.102,0,-131.276	0/1:97:40,57:40:1428:57:2033:-154.042,0,-99.6176	0/0:123:123,0:123:4400:0:0:0,-37.0267,-396.173	0/1:18:4,14:4:144:14:500:-39.9176,0,-7.89508	0/1:51:21,30:21:756:30:1072:-81.4399,0,-53.0147	0/1:57:32,24:32:1144:24:841:-58.7892,0,-86.0521	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/1:157:79,78:79:2819:78:2763:-201.649,0,-206.687	0/0:135:135,0:135:4810:0:0:0,-40.639,-433.054	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:131:130,1:130:4649:1:36:0,-35.8367,-414.973	0/1:50:30,20:30:1076:20:720:-50.0773,0,-82.1014	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:332:182,150:182:6525:150:5308:-377.914,0,-487.388	0/1:59:26,33:26:936:33:1175:-88.2962,0,-66.7987	0/0:177:176,1:176:6299:1:36:0,-49.684,-563.135	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:91:90,1:90:3210:1:36:0,-23.7955,-285.524	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:181:181,0:181:6460:0:0:0,-54.4864,-581.486	0/0:117:116,1:116:4106:1:36:0,-31.6222,-366.128	0/1:68:36,32:36:1284:32:1133:-81.8076,0,-95.3934	0/1:111:47,63:47:1692:63:2247:-169.172,0,-119.245	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/0:42:41,1:41:1476:1:36:0,-9.04498,-129.538	0/1:104:50,54:50:1796:54:1903:-140.24,0,-130.615	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:86:33,53:33:1176:53:1867:-142.418,0,-80.2592	0/1:38:22,16:22:784:16:572:-40.3743,0,-59.4448	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:9:5,4:5:180:4:144:-10.5996,0,-13.8428	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/1:176:90,86:90:3227:86:3064:-223.009,0,-237.634	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:51:27,24:27:968:24:851:-61.5576,0,-72.0848	0/0:107:107,0:107:3829:0:0:0,-32.2102,-344.805	0/1:41:27,14:27:957:14:496:-32.6315,0,-74.1016	0/0:31:30,1:30:1076:1:36:0,-5.73365,-93.5546	0/1:114:50,64:50:1783:64:2256:-168.985,0,-126.435	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:66:32,34:32:1152:34:1174:-86.091,0,-84.1222	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/0:165:165,0:165:5880:0:0:0,-49.6699,-529.311	0/1:18:7,11:7:252:11:387:-29.7474,0,-17.6104	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:131:131,0:131:4708:0:0:0,-39.4349,-423.878	0/1:103:44,59:44:1584:59:2120:-160.062,0,-111.845	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:80:38,42:38:1368:42:1508:-111.932,0,-99.3384	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:87:41,46:41:1476:46:1628:-120.617,0,-106.947	0/0:62:62,0:62:2219:0:0:0,-18.6639,-199.974	0/0:138:138,0:138:4944:0:0:0,-41.5421,-445.109	0/1:162:79,83:79:2840:83:2940:-216.067,0,-207.071	0/0:139:138,0:138:4938:0:0:0,-41.5421,-444.318	0/0:176:176,0:176:6307:0:0:0,-52.9813,-567.719	0/1:234:110,124:110:3948:124:4410:-326.632,0,-285.07	0/0:80:79,1:79:2840:1:32:0,-20.8831,-252.638	0/1:132:70,62:70:2512:62:2185:-157.179,0,-186.596	0/0:132:132,0:132:4740:0:0:0,-39.736,-426.757	0/0:110:109,0:109:3916:0:0:0,-32.8123,-352.272	0/1:199:100,99:100:3580:99:3502:-255.485,0,-262.502	0/1:124:39,85:39:1400:85:3044:-236.862,0,-88.9669	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:240:239,1:239:8571:1:36:0,-68.6489,-767.786
chr11	7132777	.	C	A	72668.7	PASS	AB=0.486065;ABP=10.1514;AC=52;AF=0.276596;AN=188;AO=3267;CIGAR=1X;DP=11463;DPB=11463;DPRA=1.03416;EPP=7053.85;EPPR=17763.5;GTI=0;LEN=1;MEANALT=1.11111;MQM=47.9718;MQMR=59.9605;NS=94;NUMALT=1;ODDS=1.97246;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116182;QR=288294;RO=8187;RPL=2593;RPP=2450.69;RPPR=116.802;RPR=674;RUN=1;SAF=2598;SAP=2476.27;SAR=669;SRF=4423;SRP=118.196;SRR=3764;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1541:0:0:0,-13.2453,-138.98	0/1:78:58,20:58:2076:20:707:-38.1261,0,-163.604	0/0:142:142,0:142:5022:0:0:0,-42.7463,-452.13	0/1:156:90,66:90:3184:66:2319:-160.652,0,-239.824	0/0:95:95,0:95:3353:0:0:0,-28.5978,-301.982	0/0:72:72,0:72:2513:0:0:0,-21.6742,-226.421	0/0:86:86,0:86:3015:0:0:0,-25.8886,-271.578	0/0:132:132,0:132:4653:0:0:0,-39.736,-418.931	0/1:88:63,25:63:2247:25:891:-53.3196,0,-175.988	0/0:117:117,0:117:4079:0:0:0,-35.2205,-367.302	0/0:173:173,0:173:6094:0:0:0,-52.0782,-548.565	0/1:149:89,60:89:3086:60:2144:-145.322,0,-233.116	0/1:103:53,50:53:1896:50:1762:-126.208,0,-139.912	0/0:305:305,0:305:10618:0:0:0,-91.8141,-955.55	0/0:132:132,0:132:4646:0:0:0,-39.736,-418.307	0/0:138:138,0:138:4841:0:0:0,-41.5421,-435.846	0/0:160:159,1:159:5587:1:36:0,-44.5665,-499.345	0/1:92:57,35:57:1969:35:1256:-85.0254,0,-149.787	0/1:191:71,120:71:2501:120:4251:-314.33,0,-167.846	0/1:109:61,48:61:2157:48:1693:-118.22,0,-161.584	0/0:145:145,0:145:5123:0:0:0,-43.6493,-461.213	0/1:37:9,28:9:324:28:991:-78.0585,0,-18.3677	0/1:62:34,27:34:1220:27:951:-66.3782,0,-91.3842	0/1:52:40,12:40:1399:12:413:-21.6513,0,-110.464	0/0:58:57,1:57:1998:1:36:0,-13.9112,-176.541	0/1:147:102,45:102:3612:45:1604:-100.017,0,-281.035	0/0:206:206,0:206:7282:0:0:0,-62.0122,-655.429	0/0:75:75,0:75:2596:0:0:0,-22.5772,-233.886	0/0:211:211,0:211:7460:0:0:0,-63.5173,-671.452	0/1:75:45,30:45:1582:30:1051:-71.3078,0,-120.092	0/0:97:97,0:97:3431:0:0:0,-29.1999,-309.004	1/1:130:7,123:7:239:123:4406:-366.816,-17.2912,0	0/1:9:8,1:8:284:1:36:-0.839245,0,-23.1941	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:39:38,1:38:1355:1:36:0,-8.21916,-118.648	0/1:240:151,89:151:5285:89:3164:-211.35,0,-403.543	0/1:77:53,24:53:1848:24:855:-53.6836,0,-143.418	0/0:133:133,0:133:4665:0:0:0,-40.037,-420.018	1/1:75:1,73:1:36:73:2580:-224.16,-19.029,0	0/0:115:115,0:115:4088:0:0:0,-34.6184,-368.106	0/0:101:101,0:101:3615:0:0:0,-30.404,-325.555	0/0:123:122,0:122:4311:0:0:0,-36.7257,-387.809	0/0:140:140,0:140:4911:0:0:0,-42.1442,-442.145	0/0:108:108,0:108:3768:0:0:0,-32.5112,-339.321	0/1:77:51,26:51:1815:26:911:-58.6812,0,-140.451	0/1:65:45,20:45:1560:20:720:-44.1185,0,-121.121	0/0:108:108,0:108:3815:0:0:0,-32.5112,-343.547	0/0:88:88,0:88:3112:0:0:0,-26.4906,-280.31	0/1:107:54,53:54:1919:53:1881:-136.045,0,-140.776	0/0:154:154,0:154:5429:0:0:0,-46.3586,-488.734	1/1:239:6,233:6:201:233:8352:-722.359,-53.558,0	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/0:38:37,1:37:1298:1:36:0,-7.86037,-113.538	1/1:109:2,107:2:72:107:3809:-327.61,-25.9755,0	0/1:92:63,28:63:2231:28:1008:-61.7187,0,-173.301	0/1:38:19,19:19:672:19:680:-49.9338,0,-49.3677	1/1:229:11,218:11:392:218:7787:-656.364,-33.3158,0	1/1:121:7,114:7:252:114:4062:-339.091,-13.3957,0	0/0:79:78,1:78:2778:1:36:0,-20.1831,-246.662	0/1:167:106,61:106:3721:61:2179:-144.689,0,-284.822	1/1:83:5,78:5:176:78:2781:-231.12,-8.80047,0	0/1:79:66,13:66:2308:13:455:-17.4829,0,-184.194	0/0:94:92,2:92:3276:2:68:0,-21.8812,-288.646	0/1:60:38,22:38:1338:22:775:-49.5111,0,-102.657	0/0:69:69,0:69:2405:0:0:0,-20.7711,-216.707	0/1:118:80,38:80:2843:38:1352:-84.7286,0,-220.585	0/0:121:120,1:120:4194:1:36:0,-32.8264,-374.047	0/1:381:61,320:61:2144:320:11348:-887.907,0,-78.1054	0/0:93:93,0:93:3288:0:0:0,-27.9958,-296.14	0/0:134:134,0:134:4723:0:0:0,-40.338,-425.229	1/1:129:7,122:7:239:122:4357:-362.964,-16.9902,0	0/0:78:77,1:77:2719:1:36:0,-19.9593,-241.431	0/0:62:62,0:62:2189:0:0:0,-18.6639,-197.275	0/0:287:285,0:285:10084:0:0:0,-85.7935,-907.086	0/1:100:55,45:55:1949:45:1599:-112.987,0,-145.581	0/0:126:126,0:126:4443:0:0:0,-37.9298,-400.042	0/1:75:43,32:43:1523:32:1140:-78.282,0,-114.729	1/1:138:9,129:9:324:129:4605:-373.324,-12.0363,0	0/1:73:43,30:43:1535:30:1044:-71.3095,0,-116.467	0/0:81:81,0:81:2867:0:0:0,-24.3834,-258.26	0/0:173:172,1:172:6059:1:36:0,-48.4799,-541.798	0/1:124:72,51:72:2515:51:1791:-123.522,0,-189.215	0/0:146:145,1:145:5098:1:36:0,-40.3521,-455.368	0/0:135:135,0:135:4712:0:0:0,-40.639,-424.244	0/1:218:141,77:141:4922:77:2720:-176.953,0,-377.509	0/0:56:56,0:56:1976:0:0:0,-16.8577,-178.094	0/1:134:72,61:72:2520:61:2171:-152.508,0,-186.641	0/0:146:146,0:146:5086:0:0:0,-43.9504,-457.886	0/0:166:166,0:166:5874:0:0:0,-49.971,-528.773	0/1:558:141,416:141:4938:416:14800:-1139.75,0,-276.548	0/1:103:37,66:37:1324:66:2353:-179.762,0,-88.456	0/0:71:71,0:71:2524:0:0:0,-21.3731,-227.41	0/0:206:205,1:205:7174:1:36:0,-58.4139,-642.127
chr11	7205175	.	G	A	370764	PASS	AB=0.511906;ABP=11.8525;AC=148;AF=0.787234;AN=188;AO=13574;CIGAR=1X;DP=17100;DPB=17100;DPRA=0;EPP=29374.4;EPPR=7627.07;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9788;MQMR=59.9872;NS=94;NUMALT=1;ODDS=8.58421;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=482524;QR=124796;RO=3523;RPL=7206;RPP=115.35;RPPR=109.165;RPR=6368;RUN=1;SAF=7218;SAP=121.877;SAR=6356;SRF=1972;SRP=112.256;SRR=1551;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:115:0,115:0:0:115:4090:-368.287,-34.6185,0	0/1:255:122,133:122:4350:133:4710:-347.299,0,-314.913	1/1:192:0,192:0:0:192:6813:-613.246,-57.7978,0	0/1:279:116,163:116:4116:163:5785:-436.771,0,-286.638	1/1:62:0,62:0:0:62:2194:-197.725,-18.6639,0	1/1:83:0,83:0:0:83:2956:-266.275,-24.9855,0	1/1:211:0,211:0:0:211:7441:-669.743,-63.5173,0	1/1:251:2,249:2:72:249:8855:-790.104,-68.7218,0	0/1:234:124,110:124:4395:110:3936:-283.991,0,-325.283	1/1:161:1,160:1:36:160:5696:-509.159,-44.8676,0	1/1:120:0,120:0:0:120:4248:-382.5,-36.1236,0	0/1:211:105,106:105:3676:106:3712:-270.765,0,-267.526	0/1:140:71,69:71:2503:69:2461:-179.599,0,-183.377	1/1:155:0,155:0:0:155:5493:-494.499,-46.6597,0	1/1:176:0,176:0:0:176:6281:-565.385,-52.9813,0	1/1:148:0,148:0:0:148:5217:-469.672,-44.5524,0	1/1:119:0,119:0:0:119:4227:-380.611,-35.8226,0	0/1:98:43,55:43:1540:55:1976:-148.614,0,-109.392	0/1:98:49,49:49:1746:49:1742:-127.562,0,-127.922	0/1:462:186,275:186:6599:275:9747:-738.051,0,-454.86	1/1:334:2,332:2:72:332:11824:-1057.19,-93.7073,0	0/1:142:89,53:89:3125:53:1891:-127.721,0,-238.733	0/1:162:75,87:75:2671:87:3086:-229.189,0,-191.869	1/1:177:0,177:0:0:177:6304:-567.439,-53.2823,0	1/1:192:0,192:0:0:192:6871:-618.457,-57.7978,0	0/1:496:224,272:224:7921:272:9715:-724.991,0,-563.61	1/1:503:0,503:0:0:503:17890:-1609.71,-151.418,0	1/1:106:0,106:0:0:106:3737:-336.529,-31.9092,0	1/1:444:0,444:0:0:444:15803:-1421.97,-133.657,0	0/1:259:144,114:144:5095:114:4063:-287.833,0,-380.67	1/1:247:0,247:0:0:247:8798:-791.811,-74.3544,0	0/1:8:3,5:3:99:5:180:-14.1438,0,-6.82834	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:448:224,224:224:7987:224:7961:-581.655,0,-583.501	0/1:217:123,94:123:4369:94:3372:-238.343,0,-328.054	1/1:135:0,135:0:0:135:4783:-430.629,-40.6391,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:322:0,322:0:0:322:11440:-1029.48,-96.9317,0	1/1:88:0,88:0:0:88:3131:-282.017,-26.4906,0	1/1:254:0,254:0:0:254:9039:-813.481,-76.4616,0	1/1:176:0,176:0:0:176:6276:-564.934,-52.9813,0	1/1:158:0,158:0:0:158:5629:-506.732,-47.5627,0	0/1:170:84,86:84:2945:86:3069:-225.262,0,-214.109	0/1:203:98,105:98:3476:105:3763:-277.76,0,-251.943	1/1:281:5,276:5:180:276:9793:-864.77,-68.0374,0	1/1:202:0,202:0:0:202:7169:-645.268,-60.8081,0	0/1:208:113,95:113:4017:95:3364:-240.36,0,-299.105	1/1:225:0,225:0:0:225:8036:-723.261,-67.7318,0	0/1:12:6,6:6:212:6:208:-15.4467,0,-15.8124	1/1:190:0,190:0:0:190:6744:-607.034,-57.1957,0	1/1:98:0,98:0:0:98:3474:-312.873,-29.5009,0	0/1:29:16,12:16:564:12:428:-30.0704,0,-42.3021	0/1:218:96,122:96:3388:122:4312:-322.636,0,-239.512	0/1:104:46,58:46:1644:58:2068:-155.084,0,-116.941	0/1:17:7,10:7:252:10:341:-25.9003,0,-17.9114	0/1:29:10,19:10:356:19:680:-52.7993,0,-23.6514	1/1:161:0,161:0:0:161:5717:-514.652,-48.4658,0	0/1:165:79,86:79:2747:86:3080:-227.758,0,-197.799	0/1:13:4,9:4:135:9:324:-25.5925,0,-8.56912	0/1:249:118,131:118:4199:131:4672:-345.685,0,-303.137	1/1:362:5,357:5:180:357:12703:-1126.54,-92.4208,0	0/1:148:73,75:73:2604:75:2666:-195.634,0,-190.056	1/1:160:0,160:0:0:160:5634:-507.185,-48.1648,0	0/1:268:126,142:126:4483:142:5019:-371.181,0,-322.966	1/1:256:1,255:1:36:255:9031:-809.178,-73.4654,0	0/1:85:42,43:42:1487:43:1544:-113.666,0,-108.536	1/1:111:0,111:0:0:111:3943:-355.065,-33.4143,0	1/1:163:0,163:0:0:163:5797:-521.474,-49.0679,0	0/1:48:25,23:25:888:23:791:-57.0538,0,-65.7896	1/1:179:3,176:3:108:176:6258:-553.24,-43.8092,0	1/1:168:0,168:0:0:168:5977:-538.038,-50.573,0	1/1:390:0,390:0:0:390:13856:-1246.65,-117.402,0	0/1:200:95,105:95:3384:105:3751:-277.584,0,-244.568	1/1:150:1,149:1:36:149:5309:-474.347,-41.5562,0	0/1:217:107,110:107:3788:110:3923:-287.94,0,-275.796	0/1:31:17,14:17:612:14:495:-35.5511,0,-46.0815	0/1:229:123,106:123:4340:106:3801:-273.35,0,-321.841	1/1:245:0,245:0:0:245:8716:-784.404,-73.7524,0	1/1:448:0,448:0:0:448:15924:-1432.85,-134.861,0	0/1:169:87,82:87:3081:82:2921:-212.25,0,-226.645	1/1:152:0,152:0:0:152:5383:-484.6,-45.7566,0	1/1:176:0,176:0:0:176:6222:-560.08,-52.9813,0	0/1:344:161,183:161:5671:183:6499:-481.442,0,-406.958	1/1:70:0,70:0:0:70:2494:-224.71,-21.0721,0	0/1:178:87,91:87:3084:91:3232:-237.518,0,-224.204	1/1:182:0,182:0:0:182:6508:-585.802,-54.7875,0	1/1:89:0,89:0:0:89:3175:-285.974,-26.7917,0	0/1:177:87,90:87:3073:90:3198:-234.76,0,-223.517	0/1:161:97,64:97:3422:64:2268:-155.915,0,-259.726	1/1:179:0,179:0:0:179:6388:-575.006,-53.8844,0	1/1:274:1,273:1:32:273:9655:-865.712,-79.2829,0
chr11	7247894	.	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chr11	7391052	.	T	C	51877.8	PASS	AB=0.497602;ABP=3.23937;AC=41;AF=0.22043;AN=186;AO=2299;CIGAR=1X;DP=10113;DPB=10113;DPRA=1.12323;EPP=287.692;EPPR=38.6264;GTI=1;LEN=1;MEANALT=1;MQM=59.9665;MQMR=59.995;NS=93;NUMALT=1;ODDS=1.85937;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82291;QR=279335;RO=7814;RPL=875;RPP=287.692;RPPR=38.6264;RPR=1424;RUN=1;SAF=0;SAP=4995.23;SAR=2299;SRF=0;SRP=16970.9;SRR=7814;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:161:77,84:77:2730:84:2999:-221.675,0,-197.475	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:226:127,99:127:4572:99:3533:-250.145,0,-343.61	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:50:50,0:50:1773:0:0:0,-15.0515,-159.851	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:166:166,0:166:5918:0:0:0,-49.971,-532.728	0/1:82:36,46:36:1265:46:1656:-124.644,0,-89.4661	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:93:47,46:47:1688:46:1652:-120.973,0,-124.211	0/1:110:57,53:57:2044:53:1887:-136.993,0,-151.118	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:96:96,0:96:3437:0:0:0,-28.8989,-309.541	0/0:71:71,0:71:2503:0:0:0,-21.3731,-225.519	0/0:67:67,0:67:2370:0:0:0,-20.169,-213.555	0/1:90:38,52:38:1368:52:1863:-140.856,0,-96.3281	0/1:42:17,25:17:608:25:891:-67.8655,0,-42.4088	0/1:294:147,147:147:5271:147:5247:-383.86,0,-386.022	0/0:164:164,0:164:5862:0:0:0,-49.3689,-527.688	0/1:163:59,104:59:2120:104:3729:-286.741,0,-142.001	0/1:82:39,43:39:1404:43:1528:-113.127,0,-101.975	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:308:146,162:146:5195:162:5793:-428.71,0,-374.97	0/0:253:253,0:253:9065:0:0:0,-76.1606,-815.823	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/0:345:345,0:345:12369:0:0:0,-103.855,-1113.04	0/1:92:57,35:57:2048:35:1249:-85.019,0,-156.897	0/0:126:126,0:126:4494:0:0:0,-37.9298,-404.627	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:291:153,138:153:5500:138:4943:-357.42,0,-407.524	0/1:178:88,90:88:3144:90:3228:-237.158,0,-229.603	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	.:.:.:.:.:.:.:.	0/0:145:145,0:145:5178:0:0:0,-43.6493,-466.158	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:186:186,0:186:6615:0:0:0,-55.9916,-595.43	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/0:98:97,1:97:3465:1:36:0,-25.9027,-308.462	0/1:90:47,43:47:1684:43:1548:-112.52,0,-124.754	0/1:148:84,64:84:3016:64:2275:-160.458,0,-227.118	0/0:240:240,0:240:8570:0:0:0,-72.2472,-771.297	0/0:165:165,0:165:5905:0:0:0,-49.6699,-531.557	0/1:138:72,66:72:2588:66:2372:-172.196,0,-191.626	0/0:139:139,0:139:4950:0:0:0,-41.8432,-445.649	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:180:180,0:180:6433:0:0:0,-54.1854,-579.057	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:150:82,68:82:2895:68:2421:-172.989,0,-215.628	0/1:48:21,27:21:741:27:968:-72.9879,0,-52.5622	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/1:126:66,60:66:2376:60:2148:-155.658,0,-176.168	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:280:127,153:127:4549:153:5481:-409.126,0,-325.286	0/0:178:171,7:171:6095:7:252:0,-30.5544,-525.62	0/1:35:17,18:17:612:18:644:-47.7545,0,-44.8774	0/0:103:103,0:103:3655:0:0:0,-31.0061,-329.151	0/1:177:93,84:93:3295:84:3001:-217.004,0,-242.295	0/0:103:103,0:103:3654:0:0:0,-31.0061,-329.063	0/1:19:13,6:13:468:6:209:-13.4305,0,-36.7401	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.582	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/0:103:103,0:103:3658:0:0:0,-31.0061,-329.423	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:98:97,1:97:3473:1:36:0,-25.9027,-309.181	0/1:226:136,90:136:4846:90:3232:-223.068,0,-368.26	0/0:119:119,0:119:4238:0:0:0,-35.8226,-381.598	0/1:115:57,58:57:2044:58:2084:-153.212,0,-149.613	0/1:10:6,4:6:216:4:133:-9.28729,0,-16.7802	0/1:147:74,73:74:2664:73:2628:-192.385,0,-195.754	0/0:137:137,0:137:4909:0:0:0,-41.2411,-441.959	0/0:237:237,0:237:8436:0:0:0,-71.3441,-759.242	0/1:136:69,67:69:2468:67:2385:-173.966,0,-181.434	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:112:112,0:112:4017:0:0:0,-33.7154,-361.716	0/1:194:102,92:102:3664:92:3300:-238.79,0,-271.563	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/1:95:43,52:43:1536:52:1864:-139.442,0,-109.935	0/0:94:94,0:94:3384:0:0:0,-28.2968,-304.774	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:83:48,35:48:1713:35:1260:-88.72,0,-129.468	0/1:101:31,70:31:1101:70:2520:-196.647,0,-68.9943	0/0:162:162,0:162:5820:0:0:0,-48.7669,-523.91	0/0:119:119,0:119:4246:0:0:0,-35.8226,-382.317
chr11	7482940	.	CTC	CTT,GTT	168840	PASS	AB=0.483585,0.513753;ABP=10.9236,8.56518;AC=146,40;AF=0.784946,0.215054;AN=186;AO=6011,1742;CIGAR=2M1X,1X1M1X;DP=7772;DPB=7773.67;DPRA=42.2283,1.12751;EPP=12925.8,3777.03;EPPR=5.18177;GTI=1;LEN=1,3;MEANALT=1.6413,2.19048;MQM=59.7578,58.3255;MQMR=60;NS=93;NUMALT=2;ODDS=0.32615;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=54,54;PQR=0;PRO=0;QA=215272,61160;QR=28;RO=1;RPL=15,1;RPP=12925.8,3777.03;RPPR=5.18177;RPR=5996,1741;RUN=1,1;SAF=6011,1742;SAP=13055.7,3785.72;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25,0:0:0:25,0:896,0:-80.9152,-7.52575,0,-80.9152,-7.52575,-80.9152	1/2:151:0,74,76:0:0:74,76:2647,2678:-433.262,-217.648,-195.372,-215.608,0,-192.73	1/1:181:0,180,0:0:0:180,0:6455,0:-580.357,-54.1854,0,-580.357,-54.1854,-580.357	1/2:176:0,101,75:0:0:101,75:3612,2635:-509.196,-214.668,-184.264,-294.882,0,-272.305	1/1:43:0,43,0:0:0:43,0:1548,0:-139.613,-12.9443,0,-139.613,-12.9443,-139.613	1/1:49:0,49,0:0:0:49,0:1746,0:-157.23,-14.7505,0,-157.23,-14.7505,-157.23	1/1:80:0,80,0:0:0:80,0:2872,0:-258.687,-24.0824,0,-258.687,-24.0824,-258.687	1/1:127:0,127,0:0:0:127,0:4532,0:-406.977,-38.2308,0,-406.977,-38.2308,-406.977	1/2:81:0,40,41:0:0:40,41:1432,1437:-233.94,-117.178,-105.137,-117.116,0,-104.773	1/1:79:1,78,0:1:28:78,0:2796,0:-248.994,-20.9816,0,-249.295,-23.4803,-251.513	1/1:91:0,90,1:0:0:90,1:3191,36:-287.002,-27.0927,0,-284.064,-23.7955,-283.763	1/2:88:0,40,48:0:0:40,48:1413,1679:-251.836,-136.773,-124.732,-115.415,0,-100.965	1/2:91:0,50,41:0:0:50,41:1792,1455:-264.914,-118.76,-103.708,-146.51,0,-134.168	1/1:66:0,65,0:0:0:65,0:2336,0:-210.25,-19.567,0,-210.25,-19.567,-210.25	1/1:65:0,65,0:0:0:65,0:2332,0:-210.14,-19.567,0,-210.14,-19.567,-210.14	1/1:64:0,63,0:0:0:63,0:2229,0:-200.513,-18.9649,0,-200.513,-18.9649,-200.513	1/1:87:0,87,0:0:0:87,0:3120,0:-280.96,-26.1896,0,-280.96,-26.1896,-280.96	1/2:63:0,42,21:0:0:42,21:1500,735:-182.287,-59.9889,-47.3457,-122.65,0,-116.328	1/2:67:0,35,32:0:0:35,32:1248,1131:-193.991,-92.257,-81.7209,-102.089,0,-92.4559	1/2:155:0,73,82:0:0:73,82:2624,2915:-451.35,-237.835,-215.86,-213.872,0,-189.187	1/1:109:0,109,0:0:0:109,0:3900,0:-351.056,-32.8123,0,-351.056,-32.8123,-351.056	1/2:52:0,16,36:0:0:16,36:576,1274:-151.124,-104.124,-99.3071,-47.3585,0,-36.5214	1/2:72:0,40,32:0:0:40,32:1432,1134:-209.507,-92.7299,-80.6887,-117.133,0,-107.5	1/1:54:0,54,0:0:0:54,0:1932,0:-174.157,-16.2556,0,-174.157,-16.2556,-174.157	1/1:57:0,57,0:0:0:57,0:2027,0:-182.615,-17.1587,0,-182.615,-17.1587,-182.615	1/2:212:0,118,94:0:0:118,94:4228,3279:-611.479,-266.834,-231.313,-344.997,0,-316.7	1/1:119:0,119,0:0:0:119,0:4256,0:-383.213,-35.8226,0,-383.213,-35.8226,-383.213	1/1:46:0,46,0:0:0:46,0:1648,0:-148.608,-13.8474,0,-148.608,-13.8474,-148.608	1/1:180:0,179,0:0:0:179,0:6444,0:-579.815,-53.8844,0,-579.815,-53.8844,-579.815	1/2:103:0,42,60:0:0:42,60:1501,2094:-292.488,-170.101,-157.458,-122.385,0,-104.323	1/1:85:0,85,0:0:0:85,0:3037,0:-273.559,-25.5876,0,-273.559,-25.5876,-273.559	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:179:0,83,96:0:0:83,96:2946,3360:-513.55,-273.515,-248.529,-240.388,0,-211.489	1/2:95:0,49,46:0:0:49,46:1752,1635:-275.069,-132.21,-117.459,-143.214,0,-129.366	1/1:59:0,58,0:0:0:58,0:2088,0:-187.722,-17.4597,0,-187.722,-17.4597,-187.722	.:.:.:.:.:.:.:.	1/1:125:0,125,0:0:0:125,0:4482,0:-402.806,-37.6288,0,-402.806,-37.6288,-402.806	1/1:53:0,53,0:0:0:53,0:1908,0:-171.951,-15.9546,0,-171.951,-15.9546,-171.951	1/1:135:0,135,0:0:0:135,0:4825,0:-434.132,-40.6391,0,-434.132,-40.6391,-434.132	1/1:82:0,82,0:0:0:82,0:2948,0:-265.504,-24.6845,0,-265.504,-24.6845,-265.504	1/1:72:0,72,0:0:0:72,0:2579,0:-232.358,-21.6742,0,-232.358,-21.6742,-232.358	1/2:72:0,35,36:0:0:35,36:1256,1257:-204.766,-102.309,-91.7734,-102.548,0,-91.7113	1/2:122:0,56,66:0:0:56,66:2008,2312:-352.118,-188.338,-171.481,-164.134,0,-144.266	1/1:139:0,138,1:0:0:138,1:4953,36:-445.535,-41.5421,0,-442.755,-38.4196,-442.454	1/1:63:0,63,0:0:0:63,0:2264,0:-204.019,-18.9649,0,-204.019,-18.9649,-204.019	1/2:118:0,59,59:0:0:59,59:2105,2098:-342.917,-171.321,-153.561,-171.952,0,-154.191	1/1:110:0,110,0:0:0:110,0:3940,0:-354.789,-33.1133,0,-354.789,-33.1133,-354.789	1/2:9:0,2,7:0:0:2,7:72,250:-26.5696,-20.694,-20.0919,-6.23466,0,-4.12745	1/1:123:0,123,0:0:0:123,0:4416,0:-397.174,-37.0267,0,-397.174,-37.0267,-397.174	1/1:52:0,52,0:0:0:52,0:1872,0:-168.759,-15.6536,0,-168.759,-15.6536,-168.759	1/2:8:0,5,3:0:0:5,3:180,100:-23.1277,-8.42583,-6.92068,-15.0451,0,-14.142	1/2:100:0,70,30:0:0:70,30:2508,1045:-289.841,-85.2918,-64.2197,-204.9,0,-195.869	1/2:30:0,10,20:0:0:10,20:360,702:-85.9988,-56.6201,-53.6098,-29.734,0,-23.7134	1/2:9:0,5,4:0:0:5,4:180,144:-26.7788,-12.0915,-10.5863,-15.0469,0,-13.8428	1/2:13:0,2,11:0:0:2,11:72,382:-37.246,-31.3691,-30.7671,-6.23466,0,-2.92333	1/1:60:0,60,0:0:0:60,0:2152,0:-193.947,-18.0618,0,-193.947,-18.0618,-193.947	1/2:111:0,51,60:0:0:51,60:1836,2101:-320.455,-171.132,-155.78,-149.677,0,-131.615	1/2:6:0,1,5:0:0:1,5:36,180:-17.9843,-15.0469,-14.7459,-3.29724,0,-1.79209	1/2:108:0,48,60:0:0:48,60:1703,2118:-311.503,-172.779,-158.329,-139.077,0,-121.016	1/1:129:0,128,1:0:0:128,1:4581,36:-411.866,-38.5318,0,-408.929,-35.2346,-408.628	1/2:52:0,17,35:0:0:17,35:612,1223:-148.65,-98.7088,-93.5913,-50.2959,0,-39.7599	1/1:85:0,84,0:0:0:84,0:3008,0:-270.664,-25.2865,0,-270.664,-25.2865,-270.664	1/2:169:0,79,88:0:0:79,88:2836,3067:-479.546,-249.014,-225.232,-230.579,0,-204.088	1/1:106:0,106,0:0:0:106,0:3800,0:-342.153,-31.9092,0,-342.153,-31.9092,-342.153	1/2:59:0,28,31:0:0:28,31:1004,1078:-169.871,-87.9777,-79.5488,-82.247,0,-72.9151	1/1:62:0,62,0:0:0:62,0:2220,0:-200.06,-18.6639,0,-200.06,-18.6639,-200.06	1/1:81:0,81,0:0:0:81,0:2891,0:-260.424,-24.3834,0,-260.424,-24.3834,-260.424	1/2:20:0,10,10:0:0:10,10:356,349:-57.7514,-28.7327,-25.7224,-29.3709,0,-26.3606	1/1:72:0,72,0:0:0:72,0:2583,0:-232.666,-21.6742,0,-232.666,-21.6742,-232.666	1/1:47:0,47,0:0:0:47,0:1688,0:-152.205,-14.1484,0,-152.205,-14.1484,-152.205	1/1:140:0,140,0:0:0:140,0:5013,0:-451.026,-42.1442,0,-451.026,-42.1442,-451.026	1/2:111:0,57,54:0:0:57,54:2048,1862:-318.53,-151.448,-134.29,-167.433,0,-151.177	1/1:115:0,115,0:0:0:115,0:4136,0:-372.409,-34.6185,0,-372.409,-34.6185,-372.409	1/2:102:0,40,61:0:0:40,61:1424,2182:-293.227,-177.238,-165.197,-115.985,0,-97.6219	2/2:2:0,0,2:0:0:0,2:0,72:-6.76236,-6.76236,-6.76236,-0.60206,-0.60206,0	1/2:132:0,64,67:0:0:64,67:2277,2365:-378.053,-192.483,-173.217,-185.565,0,-165.396	1/1:122:0,122,0:0:0:122,0:4355,0:-391.395,-36.7257,0,-391.395,-36.7257,-391.395	1/1:195:0,195,0:0:0:195,0:6984,0:-628.577,-58.7009,0,-628.577,-58.7009,-628.577	1/2:96:0,44,52:0:0:44,52:1584,1838:-279.232,-149.983,-136.738,-129.606,0,-113.952	1/1:82:0,82,0:0:0:82,0:2939,0:-264.73,-24.6845,0,-264.73,-24.6845,-264.73	1/1:88:0,87,0:0:0:87,0:3115,0:-280.343,-26.1896,0,-280.343,-26.1896,-280.343	1/2:111:0,49,62:0:0:49,62:1764,2146:-318.405,-174.479,-159.729,-144.221,0,-125.557	1/1:42:0,42,0:0:0:42,0:1508,0:-136.01,-12.6433,0,-136.01,-12.6433,-136.01	1/2:71:0,37,33:0:0:37,33:1324,1158:-201.964,-93.9968,-82.8587,-107.962,0,-98.0276	1/1:62:0,61,0:0:0:61,0:2187,0:-196.881,-18.3628,0,-196.881,-18.3628,-196.881	1/1:48:0,48,0:0:0:48,0:1720,0:-155.086,-14.4494,0,-155.086,-14.4494,-155.086	1/2:108:0,45,62:0:0:45,62:1612,2159:-306.986,-175.536,-161.99,-131.551,0,-112.888	1/2:59:0,18,41:0:0:18,41:644,1423:-168.252,-115.736,-110.317,-52.8702,0,-40.528	1/1:111:0,111,0:0:0:111,0:3984,0:-358.704,-33.4143,0,-358.704,-33.4143,-358.704	1/1:100:0,99,0:0:0:99,0:3548,0:-319.14,-29.802,0,-319.14,-29.802,-319.14
chr11	7483017	.	CCTC	TCTA,TCTC	144564	PASS	AB=0.520798,0.474806;ABP=14.1203,19.3136;AC=146,38;AF=0.793478,0.206522;AN=184;AO=5459,1410;CIGAR=1X2M1X,1X3M;DP=6887;DPB=6891.25;DPRA=0,1.1929;EPP=11857.1,3064.79;EPPR=7.35324;GTI=0;LEN=4,1;MEANALT=1.63043,2.28571;MQM=48.9526,52.2433;MQMR=60;NS=92;NUMALT=2;ODDS=3.54378;PAIRED=0,0;PAIREDR=0;PAO=6,6;PQA=216,216;PQR=0;PRO=1;QA=191414,50480;QR=71;RO=2;RPL=5459,1410;RPP=11857.1,3064.79;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=11857.1,3064.79;SAR=5459,1410;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38,0:0:0:38,0:1328,0:-117.342,-11.4391,0,-117.342,-11.4391,-117.342	1/2:100:0,56,44:0:0:56,44:1977,1566:-285.488,-126.382,-109.524,-159.388,0,-146.143	1/1:77:0,77,0:0:0:77,0:2667,0:-235.474,-23.1793,0,-235.474,-23.1793,-235.474	1/2:127:0,63,62:0:0:63,62:2151,2228:-354.92,-181.212,-162.248,-173.736,0,-155.072	1/1:41:0,41,0:0:0:41,0:1426,0:-127.037,-12.3422,0,-127.037,-12.3422,-127.037	1/1:74:0,74,0:0:0:74,0:2580,0:-229.151,-22.2762,0,-229.151,-22.2762,-229.151	1/1:121:0,121,0:0:0:121,0:4203,0:-375.506,-36.4246,0,-375.506,-36.4246,-375.506	1/1:122:0,122,0:0:0:122,0:4252,0:-378.672,-36.7257,0,-378.672,-36.7257,-378.672	1/2:117:0,80,37:0:0:80,37:2792,1328:-332.256,-107.721,-83.6388,-224.829,0,-213.691	1/1:76:0,76,0:0:0:76,0:2657,0:-237.293,-22.8783,0,-237.293,-22.8783,-237.293	1/1:61:0,61,0:0:0:61,0:2138,0:-191.8,-18.3628,0,-191.8,-18.3628,-191.8	1/2:86:0,44,42:0:0:44,42:1557,1508:-247.223,-122.566,-109.321,-124.951,0,-112.308	1/2:82:0,39,41:0:0:39,41:1374,1468:-228.529,-118.82,-107.08,-109.701,0,-97.3585	1/1:74:0,73,0:0:0:73,0:2580,0:-229.641,-21.9752,0,-229.641,-21.9752,-229.641	1/1:65:1,63,0:1:35:63,0:2215,0:-195.498,-16.152,0,-195.799,-18.9649,-198.646	1/1:55:0,55,0:0:0:55,0:1918,0:-170.477,-16.5567,0,-170.477,-16.5567,-170.477	1/1:69:0,69,0:0:0:69,0:2445,0:-216.811,-20.7711,0,-216.811,-20.7711,-216.811	1/2:60:0,36,24:0:0:36,24:1260,864:-170.381,-70.2616,-59.4245,-100.47,0,-93.2458	1/2:65:0,32,33:0:0:32,33:1136,1184:-187.784,-96.1001,-86.4671,-92.038,0,-82.104	1/2:96:0,53,43:0:0:53,43:1863,1536:-276.3,-125.287,-109.332,-151.367,0,-138.422	1/1:100:0,100,0:0:0:100,0:3538,0:-315.919,-30.103,0,-315.919,-30.103,-315.919	1/2:45:0,14,31:0:0:14,31:492,1116:-130.836,-90.9682,-86.7538,-40.2197,0,-30.8878	1/2:60:0,32,26:0:0:32,26:1139,936:-167.652,-76.2408,-66.6078,-91.4082,0,-83.5814	1/1:98:0,97,0:0:0:97,0:3392,0:-303.009,-29.1999,0,-303.009,-29.1999,-303.009	1/1:71:0,71,0:0:0:71,0:2488,0:-222.193,-21.3731,0,-222.193,-21.3731,-222.193	1/2:141:0,72,69:0:0:72,69:2532,2471:-406.454,-201.33,-179.656,-205.478,0,-184.706	1/1:157:0,157,0:0:0:157,0:5561,0:-496.079,-47.2617,0,-496.079,-47.2617,-496.079	1/1:39:0,39,0:0:0:39,0:1386,0:-123.749,-11.7402,0,-123.749,-11.7402,-123.749	1/1:110:0,110,0:0:0:110,0:3859,0:-346.58,-33.1133,0,-346.58,-33.1133,-346.58	1/2:45:0,19,26:0:0:19,26:676,936:-131.272,-76.5106,-70.7911,-55.1177,0,-47.2909	1/1:79:0,79,0:0:0:79,0:2699,0:-242.259,-23.7814,0,-242.259,-23.7814,-242.259	1/2:7:0,2,5:0:0:2,5:72,165:-19.4828,-13.6349,-13.0328,-6.1976,0,-4.69245	1/1:7:0,7,0:0:0:7,0:241,0:-21.8893,-2.10721,0,-21.8893,-2.10721,-21.8893	1/1:4:0,4,0:0:0:4,0:138,0:-12.665,-1.20412,0,-12.665,-1.20412,-12.665	1/1:1:0,1,0:0:0:1,0:36,0:-3.5027,-0.30103,0,-3.5027,-0.30103,-3.5027	1/1:6:0,6,0:0:0:6,0:214,0:-19.4463,-1.80618,0,-19.4463,-1.80618,-19.4463	1/2:238:1,117,118:1:36:117,118:4143,4236:-676.918,-341.048,-308.765,-333.309,0,-300.725	1/2:51:0,31,19:0:0:31,19:1090,665:-142.152,-54.067,-44.7351,-88.1983,0,-82.4787	1/1:75:0,75,0:0:0:75,0:2660,0:-237.195,-22.5773,0,-237.195,-22.5773,-237.195	1/1:1:0,1,0:0:0:1,0:36,0:-3.57877,-0.30103,0,-3.57877,-0.30103,-3.57877	1/1:47:0,47,0:0:0:47,0:1636,0:-146.629,-14.1484,0,-146.629,-14.1484,-146.629	1/1:49:0,49,0:0:0:49,0:1734,0:-154.522,-14.7505,0,-154.522,-14.7505,-154.522	1/1:46:0,46,0:0:0:46,0:1599,0:-141.754,-13.8474,0,-141.754,-13.8474,-141.754	1/1:101:0,99,2:0:0:99,2:3493,72:-311.524,-29.802,0,-305.655,-23.5738,-305.053	1/1:54:0,53,1:0:0:53,1:1871,36:-166.996,-15.9546,0,-164.063,-12.6624,-163.762	1/2:81:0,40,41:0:0:40,41:1411,1472:-234.603,-120.165,-108.124,-114.792,0,-102.45	1/2:86:0,56,30:0:0:56,30:1957,1065:-243.445,-86.423,-69.5653,-157.372,0,-148.341	1/1:87:0,87,0:0:0:87,0:3022,0:-269.521,-26.1896,0,-269.521,-26.1896,-269.521	1/1:86:0,86,0:0:0:86,0:3032,0:-271.435,-25.8886,0,-271.435,-25.8886,-271.435	1/2:68:0,31,37:0:0:31,37:1094,1320:-196.364,-107.793,-98.4612,-88.9243,0,-77.7862	1/1:99:0,99,0:0:0:99,0:3418,0:-307.322,-29.802,0,-307.322,-29.802,-307.322	.:.:.:.:.:.:.:.	1/1:59:0,58,0:0:0:58,0:2050,0:-181.862,-17.4597,0,-181.862,-17.4597,-181.862	1/1:41:0,41,0:0:0:41,0:1437,0:-129.349,-12.3422,0,-129.349,-12.3422,-129.349	1/2:9:0,6,3:0:0:6,3:193,104:-24.2091,-8.75133,-6.94515,-15.7943,0,-14.8913	1/2:106:0,58,48:0:0:58,48:2034,1710:-303.151,-139.19,-121.73,-164.313,0,-149.863	1/2:49:0,21,28:0:0:21,28:723,987:-138.434,-80.1106,-73.789,-58.6692,0,-50.2403	1/2:2:0,1,1:0:0:1,1:32,36:-5.84868,-3.29465,-2.99362,-2.89354,0,-2.59251	1/2:8:0,5,3:0:0:5,3:179,108:-23.7311,-9.16481,-7.65966,-14.925,0,-14.0219	1/1:48:0,48,0:0:0:48,0:1674,0:-148.98,-14.4494,0,-148.98,-14.4494,-148.98	1/2:111:0,58,53:0:0:58,53:2045,1908:-320.6,-155.297,-137.837,-165.658,0,-149.703	.:.:.:.:.:.:.:.	1/2:108:0,52,56:0:0:52,56:1821,1998:-310.292,-162.788,-147.134,-147.857,0,-130.999	1/1:121:0,119,2:0:0:119,2:4152,72:-371.609,-35.8226,0,-365.744,-29.6277,-365.141	1/2:32:0,18,14:0:0:18,14:629,504:-92.1002,-41.2096,-35.7911,-51.2439,0,-47.0294	1/1:54:0,54,0:0:0:54,0:1875,0:-168.126,-16.2556,0,-168.126,-16.2556,-168.126	1/2:113:0,57,56:0:0:57,56:2011,2016:-327.54,-164.358,-147.199,-163.538,0,-146.68	1/1:81:0,81,0:0:0:81,0:2841,0:-254.716,-24.3834,0,-254.716,-24.3834,-254.716	1/2:37:0,20,17:0:0:20,17:709,608:-107.202,-49.7906,-43.77,-57.7657,0,-52.6482	1/1:62:0,62,0:0:0:62,0:2116,0:-188.572,-18.6639,0,-188.572,-18.6639,-188.572	1/1:111:0,111,0:0:0:111,0:3949,0:-353.92,-33.4143,0,-353.92,-33.4143,-353.92	1/2:9:0,6,3:0:0:6,3:202,108:-25.4586,-9.15779,-7.35161,-16.6523,0,-15.7492	1/1:50:0,50,0:0:0:50,0:1766,0:-156.766,-15.0515,0,-156.766,-15.0515,-156.766	1/1:51:0,51,0:0:0:51,0:1784,0:-157.803,-15.3525,0,-157.803,-15.3525,-157.803	1/1:214:0,213,1:0:0:213,1:7460,36:-665.84,-64.1194,0,-662.91,-60.8312,-662.609	1/2:76:0,41,35:0:0:41,35:1445,1260:-220.262,-103.001,-90.6589,-117.617,0,-107.081	1/1:64:0,64,0:0:0:64,0:2273,0:-200.759,-19.2659,0,-200.759,-19.2659,-200.759	1/2:64:0,34,30:0:0:34,30:1208,1057:-183.247,-85.7816,-75.5466,-97.8159,0,-88.785	1/2:5:0,1,4:0:0:1,4:36,144:-14.9462,-12.0373,-11.7363,-3.26578,0,-2.06166	1/2:69:0,26,43:0:0:26,43:911,1543:-198.141,-125.736,-117.909,-72.7533,0,-59.809	1/1:75:0,75,0:0:0:75,0:2618,0:-233.597,-22.5773,0,-233.597,-22.5773,-233.597	1/1:181:0,181,0:0:0:181,0:6322,0:-566.141,-54.4864,0,-566.141,-54.4864,-566.141	1/2:177:0,102,75:0:0:102,75:3602,2682:-510.111,-218.261,-187.556,-292.204,0,-269.627	1/1:60:0,60,0:0:0:60,0:2117,0:-190.113,-18.0618,0,-190.113,-18.0618,-190.113	1/1:80:0,80,0:0:0:80,0:2845,0:-255.026,-24.0824,0,-255.026,-24.0824,-255.026	1/2:170:0,89,81:0:0:89,81:3141,2901:-490.649,-236.228,-209.436,-254.775,0,-230.392	1/1:49:0,49,0:0:0:49,0:1711,0:-152.41,-14.7505,0,-152.41,-14.7505,-152.41	1/2:107:0,61,45:0:0:61,45:2133,1614:-301.882,-130.429,-112.067,-171.448,0,-157.901	1/1:95:0,95,0:0:0:95,0:3292,0:-293.27,-28.5979,0,-293.27,-28.5979,-293.27	1/1:38:0,38,0:0:0:38,0:1345,0:-120.347,-11.4391,0,-120.347,-11.4391,-120.347	1/2:75:0,48,26:0:0:48,26:1711,932:-214.377,-75.7675,-61.3181,-138.682,0,-130.855	1/2:75:0,19,55:0:0:19,55:667,1980:-214.66,-160.67,-154.951,-53.9261,0,-37.3694	1/1:41:0,41,0:0:0:41,0:1433,0:-128.78,-12.3422,0,-128.78,-12.3422,-128.78	1/1:165:0,165,0:0:0:165,0:5744,0:-512.981,-49.67,0,-512.981,-49.67,-512.981
chr11	7664854	.	G	C	195763	PASS	AB=0.546054;ABP=89.6147;AC=147;AF=0.781915;AN=188;AO=9124;CIGAR=1X;DP=11273;DPB=11273;DPRA=40.3943;EPP=19815.5;EPPR=4639.1;GTI=3;LEN=1;MEANALT=1.13978;MQM=59.7096;MQMR=59.9555;NS=94;NUMALT=1;ODDS=3.07122;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=325633;QR=76514;RO=2135;RPL=9124;RPP=19815.5;RPPR=4639.1;RPR=0;RUN=1;SAF=0;SAP=19815.5;SAR=9124;SRF=0;SRP=4639.1;SRR=2135;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1961:-176.755,-16.5567,0	0/1:181:69,112:69:2480:112:3995:-305.212,0,-168.41	1/1:130:0,130:0:0:130:4621:-416.016,-39.1339,0	0/1:226:111,113:111:3992:113:4064:-298.154,0,-291.678	1/1:82:0,82:0:0:82:2944:-265.126,-24.6845,0	1/1:77:0,77:0:0:77:2756:-248.262,-23.1793,0	1/1:144:0,144:0:0:144:5147:-463.366,-43.3483,0	1/1:208:0,208:0:0:208:7403:-666.071,-62.6142,0	0/1:111:38,72:38:1360:72:2565:-197.585,0,-89.2275	1/1:115:0,115:0:0:115:4101:-369.225,-34.6185,0	1/1:77:0,77:0:0:77:2756:-248.273,-23.1793,0	0/1:75:36,39:36:1288:39:1400:-103.721,0,-93.6463	0/1:63:30,33:30:1072:33:1188:-88.2336,0,-77.8276	1/1:102:0,102:0:0:102:3624:-326.147,-30.7051,0	0/1:77:42,35:42:1508:35:1253:-89.8887,0,-112.835	1/1:73:0,73:0:0:73:2612:-235.319,-21.9752,0	1/1:101:0,101:0:0:101:3588:-323.104,-30.404,0	0/1:68:30,38:30:1061:38:1364:-102.579,0,-75.3293	0/1:49:26,23:26:936:23:828:-60.0936,0,-69.809	0/1:224:81,142:81:2904:142:5077:-389.577,0,-194.106	1/1:249:0,249:0:0:249:8909:-801.699,-74.9565,0	0/1:110:78,32:78:2800:32:1144:-70.1562,0,-219.126	0/1:110:30,79:30:1072:79:2828:-221.584,0,-63.6204	1/1:164:0,164:0:0:164:5808:-522.813,-49.3689,0	1/1:96:0,96:0:0:96:3452:-310.873,-28.8989,0	0/1:407:203,203:203:7280:203:7228:-527.965,0,-532.672	1/1:359:0,359:0:0:359:12814:-1152.51,-108.07,0	1/1:32:0,32:0:0:32:1152:-103.953,-9.63296,0	1/1:251:0,251:0:0:251:8988:-808.864,-75.5585,0	0/1:170:59,111:59:2116:111:3953:-304.73,0,-139.534	1/1:157:0,157:0:0:157:5591:-503.3,-47.2617,0	0/1:12:4,8:4:144:8:288:-22.6504,0,-9.70126	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:13:1,12:1:36:12:417:-34.2619,-0.315115,0	1/1:18:0,18:0:0:18:640:-57.9178,-5.41854,0	0/1:227:92,134:92:3288:134:4797:-362.998,0,-227.747	0/1:202:97,105:97:3468:105:3772:-278.848,0,-251.494	1/1:95:0,95:0:0:95:3404:-306.526,-28.5979,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:185:0,185:0:0:185:6594:-593.437,-55.6906,0	1/1:46:0,46:0:0:46:1636:-147.527,-13.8474,0	1/1:184:1,182:1:36:182:6501:-581.564,-51.85,0	1/1:127:0,127:0:0:127:4531:-407.915,-38.2308,0	1/1:82:0,82:0:0:82:2940:-264.808,-24.6845,0	0/1:125:41,84:41:1476:84:2990:-230.248,0,-95.5074	0/1:134:63,71:63:2256:71:2529:-186.568,0,-162.859	1/1:247:0,247:0:0:247:8733:-785.453,-74.3544,0	1/1:169:0,169:0:0:169:6056:-545.131,-50.8741,0	0/1:194:78,116:78:2796:116:4118:-312.276,0,-193.48	1/1:208:0,208:0:0:208:7414:-666.792,-62.6142,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:155:0,155:0:0:155:5552:-499.777,-46.6597,0	1/1:53:0,53:0:0:53:1895:-170.816,-15.9546,0	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:136:60,75:60:2145:75:2661:-198.729,0,-152.314	0/1:42:6,36:6:216:36:1280:-102.812,0,-7.14725	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:20:5,15:5:176:15:536:-42.5533,0,-10.1644	1/1:124:0,124:0:0:124:4428:-398.601,-37.3277,0	0/1:114:53,61:53:1904:61:2180:-162.144,0,-137.32	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:240:132,108:132:4728:108:3861:-275.418,0,-353.431	1/1:230:1,229:1:32:229:8162:-731.212,-66.0376,0	0/1:92:42,50:42:1504:50:1796:-134.199,0,-107.96	1/1:85:0,85:0:0:85:3044:-274.177,-25.5876,0	0/1:200:76,124:76:2728:124:4409:-336.711,0,-185.557	1/1:157:0,157:0:0:157:5557:-500.223,-47.2617,0	0/1:41:16,25:16:568:25:896:-68.6181,0,-39.1096	1/1:82:0,82:0:0:82:2936:-264.421,-24.6845,0	1/1:89:1,88:1:36:88:3145:-279.669,-23.1934,0	0/1:31:13,18:13:468:18:629:-47.6018,0,-33.1277	1/1:122:0,121:0:0:121:4303:-386.896,-36.4246,0	1/1:103:0,103:0:0:103:3669:-330.354,-31.0061,0	1/1:278:0,277:0:0:277:9894:-889.934,-83.3853,0	0/1:167:82,85:82:2932:85:3018:-221.57,0,-213.843	1/1:165:0,165:0:0:165:5870:-528.314,-49.67,0	0/1:153:95,58:95:3400:58:2084:-141.748,0,-260.157	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:111:42,69:42:1504:69:2434:-185.779,0,-102.24	1/1:159:2,157:2:72:157:5600:-497.148,-41.027,0	1/1:232:0,230:0:0:230:8242:-741.502,-69.2369,0	0/1:122:66,56:66:2360:56:2001:-143.634,0,-175.933	1/1:97:1,96:1:36:96:3430:-305.306,-25.6016,0	1/1:142:0,142:0:0:142:5088:-458.019,-42.7463,0	0/1:172:83,88:83:2976:88:3148:-231.644,0,-216.214	1/1:44:0,44:0:0:44:1580:-142.483,-13.2453,0	0/1:88:41,47:41:1476:47:1661:-123.277,0,-106.646	1/1:75:0,75:0:0:75:2672:-240.718,-22.5773,0	1/1:57:0,57:0:0:57:2052:-184.942,-17.1587,0	0/1:104:50,54:50:1800:54:1921:-141.858,0,-130.975	0/1:70:41,29:41:1476:29:1040:-72.8399,0,-112.064	1/1:97:0,97:0:0:97:3488:-314.123,-29.1999,0	1/1:115:0,115:0:0:115:4097:-368.906,-34.6185,0
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chr11	7683790	.	A	G	46776.7	PASS	AB=0.505139;ABP=4.08162;AC=41;AF=0.218085;AN=188;AO=2374;CIGAR=1X;DP=9307;DPB=9307;DPRA=1.33511;EPP=5158.09;EPPR=15057.8;GTI=3;LEN=1;MEANALT=1;MQM=59.9857;MQMR=59.9814;NS=94;NUMALT=1;ODDS=0.874972;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83903;QR=246601;RO=6933;RPL=2076;RPP=2894.6;RPPR=10369.3;RPR=298;RUN=1;SAF=2076;SAP=2894.6;SAR=298;SRF=6343;SRP=10369.3;SRR=590;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:210:124,86:124:4412:86:3014:-208.274,0,-334.036	0/0:117:117,0:117:4139:0:0:0,-35.2205,-372.695	0/1:162:70,92:70:2512:92:3269:-245.664,0,-177.565	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:21:21,0:21:735:0:0:0,-6.32163,-66.4714	0/0:124:124,0:124:4427:0:0:0,-37.3277,-398.602	0/0:109:109,0:109:3887:0:0:0,-32.8123,-350.025	0/1:81:36,45:36:1288:45:1616:-121.347,0,-91.8402	0/0:115:115,0:115:4102:0:0:0,-34.6184,-369.365	0/0:113:113,0:113:4023:0:0:0,-34.0164,-362.26	0/1:89:45,44:45:1581:44:1563:-114.169,0,-115.787	0/1:84:45,39:45:1608:39:1369:-98.2197,0,-119.724	0/0:132:132,0:132:4691:0:0:0,-39.736,-422.354	0/1:54:31,23:31:1100:23:807:-56.6935,0,-83.0547	0/0:59:59,0:59:2090:0:0:0,-17.7608,-188.369	0/0:159:159,0:159:5662:0:0:0,-47.8638,-509.596	0/1:82:40,42:40:1419:42:1468:-107.727,0,-103.322	0/1:54:26,28:26:923:28:974:-71.7151,0,-67.1311	0/1:100:43,57:43:1518:57:2015:-151.519,0,-106.809	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/1:113:42,71:42:1500:71:2536:-194.475,0,-101.278	0/1:43:15,28:15:540:28:976:-75.2054,0,-35.9922	0/0:62:61,1:61:2171:1:36:0,-15.0656,-192.058	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:448:195,253:195:6963:253:8945:-670.182,0,-491.875	0/0:129:129,0:129:4622:0:0:0,-38.8329,-416.141	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:343:343,0:343:12191:0:0:0,-103.253,-1097.05	0/1:206:122,84:122:4355:84:2964:-204.981,0,-330.113	0/0:104:104,0:104:3698:0:0:0,-31.3071,-333.001	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:26:25,1:25:896:1:36:0,-4.2285,-77.3621	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:375:199,176:199:7078:176:6243:-449.086,0,-524.199	0/1:118:60,58:60:2123:58:2036:-147.988,0,-155.817	0/0:111:111,0:111:3910:0:0:0,-33.4143,-352.095	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:87:87,0:87:3099:0:0:0,-26.1896,-279.138	0/0:38:38,0:38:1342:0:0:0,-11.4391,-121.079	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.735	0/0:94:94,0:94:3360:0:0:0,-28.2968,-302.617	0/0:77:77,0:77:2726:0:0:0,-23.1793,-245.555	0/1:147:69,78:69:2448:78:2780:-206.19,0,-176.324	0/1:71:37,34:37:1303:34:1211:-87.9224,0,-96.1975	0/0:138:138,0:138:4881:0:0:0,-41.5421,-439.447	0/0:103:103,0:103:3670:0:0:0,-31.0061,-330.504	0/1:186:101,85:101:3594:85:3001:-214.328,0,-267.676	0/0:173:173,0:173:6175:0:0:0,-52.0782,-555.85	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/0:108:108,0:108:3849:0:0:0,-32.5112,-346.605	0/0:102:102,0:102:3635:0:0:0,-30.7051,-327.356	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:105:49,56:49:1733:56:1941:-143.352,0,-124.645	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:18:13,5:13:460:5:180:-11.1335,0,-36.3168	0/1:41:22,19:22:757:19:668:-48.1034,0,-56.1035	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/1:163:71,92:71:2511:92:3251:-243.743,0,-177.172	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:368:195,173:195:6959:173:6090:-437.432,0,-515.598	0/0:225:219,6:219:7831:6:216:0,-47.9412,-683.84	0/1:107:61,46:61:2179:46:1640:-115.678,0,-164.165	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.988	0/1:112:48,64:48:1720:64:2283:-172.016,0,-121.37	0/0:129:127,2:127:4512:2:72:0,-31.9961,-399.412	0/1:75:35,40:35:1229:40:1412:-104.8,0,-88.306	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:140:140,0:140:4957:0:0:0,-42.1442,-446.26	0/1:34:13,21:13:464:21:736:-56.3251,0,-31.8625	0/0:56:53,3:53:1900:3:108:0,-6.78251,-161.203	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:151:151,0:151:5355:0:0:0,-45.4555,-482.088	0/1:153:72,81:72:2571:81:2872:-212.659,0,-185.582	0/0:64:64,0:64:2271:0:0:0,-19.2659,-204.652	0/1:142:65,77:65:2319:77:2717:-201.8,0,-166.224	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	0/1:82:47,35:47:1674:35:1245:-87.6683,0,-126.261	0/0:63:63,0:63:2223:0:0:0,-18.9649,-200.332	0/0:148:147,1:147:5223:1:36:0,-40.9542,-466.611	0/1:125:64,61:64:2275:61:2133:-154.606,0,-167.383	0/0:92:92,0:92:3253:0:0:0,-27.6948,-292.992	0/0:84:84,0:84:2990:0:0:0,-25.2865,-269.331	0/1:142:79,63:79:2802:63:2201:-155.607,0,-209.637	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:81:44,37:44:1567:37:1311:-93.9074,0,-116.937	0/0:83:83,0:83:2943:0:0:0,-24.9855,-265.103	0/0:81:81,0:81:2870:0:0:0,-24.3834,-258.538	0/1:159:80,79:80:2811:79:2776:-202.218,0,-205.366	0/1:88:35,53:35:1225:53:1896:-144.427,0,-84.0608	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.123	0/0:102:101,1:101:3576:1:36:0,-27.1068,-318.45
chr11	8060938	.	A	G	42925.2	PASS	AB=0.580088;ABP=257.611;AC=45;AF=0.241935;AN=186;AO=2662;CIGAR=1X;DP=10097;DPB=10097;DPRA=1.07656;EPP=5783.47;EPPR=16145.7;GTI=1;LEN=1;MEANALT=1.01852;MQM=29.9628;MQMR=44.0207;NS=93;NUMALT=1;ODDS=2.68317;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94447;QR=265748;RO=7434;RPL=1505;RPP=101.798;RPPR=112.415;RPR=1157;RUN=1;SAF=1505;SAP=101.798;SAR=1157;SRF=3411;SRP=112.415;SRR=4023;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:18,45:18:640:45:1575:-107.472,0,-34.1601	0/0:130:130,0:130:4660:0:0:0,-39.1339,-365.563	0/1:219:73,146:73:2596:146:5169:-331.848,0,-157.66	0/0:149:148,1:148:5300:1:36:0,-41.262,-436.029	0/0:44:44,0:44:1568:0:0:0,-13.2453,-130.332	0/0:28:28,0:28:1000:0:0:0,-8.42884,-81.8987	0/1:91:47,44:47:1671:44:1572:-75.3145,0,-106.853	0/0:182:182,0:182:6488:0:0:0,-54.7875,-529.696	0/1:90:18,72:18:625:72:2559:-158.778,0,-23.2556	0/0:181:181,0:181:6453:0:0:0,-54.4864,-520.324	0/0:98:98,0:98:3520:0:0:0,-29.5009,-274.881	0/1:123:65,58:65:2324:58:2064:-108.168,0,-158.859	0/1:120:65,55:65:2332:55:1955:-88.7782,0,-154.659	0/1:75:39,36:39:1396:36:1267:-47.3645,0,-89.2365	0/0:112:112,0:112:4005:0:0:0,-33.7154,-328.596	0/0:76:76,0:76:2720:0:0:0,-22.8783,-223.438	0/0:87:87,0:87:3111:0:0:0,-26.1896,-249.06	0/0:75:75,0:75:2670:0:0:0,-22.5772,-211.385	0/0:63:63,0:63:2264:0:0:0,-18.9649,-181.096	0/1:166:37,129:37:1320:129:4598:-282.858,0,-59.6546	0/0:246:245,1:245:8729:1:36:0,-72.064,-741.12	0/1:66:16,50:16:576:50:1788:-119.13,0,-28.517	0/1:83:28,55:28:1000:55:1949:-136.295,0,-59.4702	0/0:54:54,0:54:1935:0:0:0,-16.2556,-159.314	0/0:33:33,0:33:1188:0:0:0,-9.93399,-99.0016	0/0:372:372,0:372:13330:0:0:0,-111.983,-1073.37	0/1:231:106,125:106:3783:125:4416:-260.821,0,-252.416	0/1:53:19,34:19:680:34:1207:-66.7646,0,-40.2806	0/1:251:110,141:110:3940:141:5010:-306.439,0,-266.613	0/1:103:26,77:26:928:77:2715:-151.907,0,-44.6929	0/0:97:97,0:97:3476:0:0:0,-29.1999,-279.702	0/1:11:6,5:6:216:5:180:-7.59849,0,-15.4823	0/0:9:9,0:9:324:0:0:0,-2.70927,-27.0195	0/1:3:1,2:1:36:2:68:-4.00586,0,-2.15145	0/0:8:8,0:8:284:0:0:0,-2.40824,-24.911	0/1:5:1,4:1:36:4:144:-8.5454,0,-1.54939	0/0:380:380,0:380:13562:0:0:0,-114.391,-1101.75	0/0:166:166,0:166:5933:0:0:0,-49.971,-471.368	0/0:74:74,0:74:2648:0:0:0,-22.2762,-212.932	0/1:2:1,1:1:36:1:36:-1.38727,0,-2.99111	0/1:115:40,75:40:1436:75:2659:-140.709,0,-84.147	0/1:45:27,18:27:972:18:631:-27.2593,0,-64.0529	0/1:165:66,99:66:2368:99:3500:-216.479,0,-150.358	0/1:113:69,44:69:2452:44:1563:-73.4279,0,-161.253	0/0:96:96,0:96:3448:0:0:0,-28.8989,-284.019	0/0:61:61,0:61:2176:0:0:0,-18.3628,-179.01	0/0:141:140,1:140:5016:1:36:0,-40.2621,-413.333	0/1:189:67,122:67:2412:122:4345:-236.775,0,-141.943	0/0:74:74,0:74:2660:0:0:0,-22.2762,-215.195	0/0:158:157,1:157:5632:1:36:0,-45.5734,-444.155	0/0:74:74,0:74:2618:0:0:0,-22.2762,-212.253	0/1:10:3,7:3:104:7:252:-10.9998,0,-5.5398	0/0:74:74,0:74:2652:0:0:0,-22.2762,-216.944	0/0:32:32,0:32:1136:0:0:0,-9.63296,-89.158	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.05454	0/1:171:77,94:77:2760:94:3350:-179.96,0,-181.768	0/0:13:13,0:13:455:0:0:0,-3.91339,-37.5685	0/1:4:1,3:1:36:3:108:-6.93742,0,-2.39415	0/1:8:4,4:4:140:4:144:-6.81717,0,-9.24964	0/0:62:62,0:62:2228:0:0:0,-18.6639,-183.553	0/1:165:87,78:87:3107:78:2771:-122.615,0,-199.831	.:.:.:.:.:.:.:.	0/1:297:167,130:167:5950:130:4632:-238.581,0,-395.862	0/1:220:95,125:95:3387:125:4432:-219.408,0,-206.675	0/1:95:31,64:31:1112:64:2296:-122.037,0,-63.1733	0/1:75:23,52:23:824:52:1834:-117.094,0,-49.6614	0/0:144:143,1:143:5123:1:27:0,-40.6814,-411.748	0/1:140:37,103:37:1328:103:3660:-235.182,0,-72.0945	0/1:34:20,14:20:716:14:491:-19.2778,0,-48.6108	0/1:60:24,36:24:841:36:1280:-71.0468,0,-50.5701	0/1:142:67,75:67:2396:75:2659:-117.927,0,-141.377	0/1:31:9,22:9:320:22:788:-38.3133,0,-17.2382	0/0:66:66,0:66:2360:0:0:0,-19.868,-195.993	0/0:102:99,3:99:3551:3:108:0,-24.8626,-286.979	0/0:116:116,0:116:4134:0:0:0,-34.9195,-340.375	0/0:213:213,0:213:7611:0:0:0,-64.1194,-612.051	0/1:124:42,82:42:1495:82:2895:-155.776,0,-80.9462	0/0:176:176,0:176:6282:0:0:0,-52.9813,-507.506	0/1:6:3,3:3:108:3:108:-7.56303,0,-7.25401	0/0:105:104,1:104:3724:1:36:0,-29.425,-305.086	0/1:80:36,44:36:1277:44:1580:-76.9167,0,-79.9301	0/0:114:114,0:114:4079:0:0:0,-34.3174,-328.119	0/0:142:142,0:142:5053:0:0:0,-42.7463,-407.28	0/1:94:45,49:45:1616:49:1752:-84.7187,0,-104.093	0/0:133:133,0:133:4763:0:0:0,-40.037,-378.033	0/1:196:101,95:101:3623:95:3353:-174.67,0,-227.243	0/1:44:24,20:24:856:20:703:-31.4096,0,-56.6901	0/0:117:115,1:115:4115:1:36:0,-32.9496,-339.948	0/0:116:116,0:116:4151:0:0:0,-34.9195,-340.321	0/0:27:27,0:27:968:0:0:0,-8.12781,-77.6098	0/1:97:43,54:43:1519:54:1897:-81.5443,0,-92.7148	0/1:95:35,60:35:1248:60:2105:-109.989,0,-73.7419	0/0:311:310,1:310:11088:1:36:0,-91.5337,-933.968	0/0:195:195,0:195:6983:0:0:0,-58.7008,-573.519
chr11	8147637	.	C	T	157550	PASS	AB=0.485211;ABP=11.1029;AC=143;AF=0.777174;AN=184;AO=7400;CIGAR=1X;DP=9606;DPB=9606;DPRA=26.3791;EPP=16071.9;EPPR=4791.11;GTI=1;LEN=1;MEANALT=1.01099;MQM=59.9916;MQMR=59.9841;NS=92;NUMALT=1;ODDS=1.32273;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264268;QR=78293;RO=2205;RPL=7400;RPP=16071.9;RPPR=4791.11;RPR=0;RUN=1;SAF=7400;SAP=16071.9;SAR=0;SRF=2205;SRP=4791.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:738:-66.7422,-6.32163,0	0/1:119:56,63:56:1985:63:2233:-165.41,0,-143.1	1/1:116:0,116:0:0:116:4110:-370.084,-34.9195,0	0/1:261:137,124:137:4903:124:4398:-317.427,0,-362.852	1/1:88:0,88:0:0:88:3136:-282.464,-26.4906,0	1/1:40:0,40:0:0:40:1431:-129.087,-12.0412,0	1/1:170:0,170:0:0:170:6053:-544.873,-51.1751,0	1/1:90:0,90:0:0:90:3215:-289.572,-27.0927,0	0/1:63:33,30:33:1188:30:1067:-77.3763,0,-88.2637	1/1:133:0,133:0:0:133:4756:-428.196,-40.037,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:53:30,23:30:1072:23:824:-58.5287,0,-80.8379	0/1:51:25,26:25:900:26:936:-69.2069,0,-65.9685	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	0/1:72:35,37:35:1243:37:1328:-98.1481,0,-90.4997	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:39:18,21:18:648:21:747:-55.8141,0,-46.9117	0/1:39:20,19:20:707:19:684:-50.1502,0,-52.2144	0/1:422:201,221:201:7135:221:7921:-585.876,0,-515.165	1/1:177:0,177:0:0:177:6332:-569.972,-53.2823,0	0/1:192:139,53:139:4939:53:1891:-112.67,0,-386.863	0/1:106:57,49:57:2044:49:1739:-124.884,0,-152.323	1/1:131:1,130:1:36:130:4634:-413.624,-35.8367,0	1/1:88:0,88:0:0:88:3160:-284.624,-26.4906,0	0/1:310:145,165:145:5114:165:5905:-438.238,0,-367.086	1/1:195:0,195:0:0:195:6973:-627.633,-58.7009,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:390:0,390:0:0:390:13918:-1252.36,-117.402,0	0/1:127:55,72:55:1927:72:2563:-192.689,0,-135.473	1/1:184:0,184:0:0:184:6577:-592.01,-55.3895,0	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:190:87,103:87:3082:103:3691:-275.196,0,-220.414	0/1:215:96,119:96:3403:119:4255:-318.407,0,-241.763	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:216:0,216:0:0:216:7740:-696.631,-65.0225,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:99:0,99:0:0:99:3490:-314.309,-29.802,0	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	1/1:38:1,37:1:36:37:1312:-114.781,-7.84087,0	0/1:101:48,53:48:1690:53:1885:-139.523,0,-121.978	0/1:140:75,65:75:2675:65:2332:-167.995,0,-198.851	1/1:198:2,196:2:72:196:7005:-623.673,-52.7672,0	1/1:137:0,137:0:0:137:4861:-437.643,-41.2411,0	0/1:132:68,64:68:2427:64:2277:-165.454,0,-178.949	1/1:243:0,243:0:0:243:8714:-784.248,-73.1503,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:206:0,206:0:0:206:7366:-662.986,-62.0122,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:147:90,57:90:3208:57:2031:-138.81,0,-244.69	0/1:39:14,25:14:495:25:896:-69.2202,0,-33.1429	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/1:12:4,8:4:136:8:279:-21.8352,0,-8.96318	1/1:47:0,47:0:0:47:1672:-150.766,-14.1484,0	0/1:108:59,49:59:2089:49:1756:-125.813,0,-155.767	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:192:111,81:111:3938:81:2888:-202.358,0,-296.814	1/1:229:1,227:1:36:227:8103:-725.767,-65.3165,0	0/1:50:23,27:23:811:27:964:-72.0253,0,-58.2585	1/1:105:0,105:0:0:105:3756:-338.24,-31.6082,0	0/1:217:114,103:114:3974:103:3667:-264.909,0,-292.507	1/1:128:3,125:3:108:125:4473:-392.663,-28.4567,0	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	1/1:81:0,81:0:0:81:2868:-258.355,-24.3834,0	1/1:54:0,54:0:0:54:1921:-173.165,-16.2556,0	0/1:20:9,11:9:320:11:396:-29.9621,0,-23.1218	1/1:125:0,125:0:0:125:4455:-401.119,-37.6288,0	1/1:53:0,53:0:0:53:1877:-169.208,-15.9546,0	1/1:171:0,171:0:0:171:6093:-548.471,-51.4761,0	0/1:190:95,95:95:3382:95:3416:-250.457,0,-247.4	1/1:123:0,123:0:0:123:4377:-394.102,-37.0267,0	0/1:82:46,36:46:1643:36:1292:-91.8993,0,-123.473	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/1:149:83,66:83:2972:66:2359:-167.715,0,-222.859	1/1:159:0,159:0:0:159:5664:-509.879,-47.8638,0	1/1:299:0,299:0:0:299:10732:-965.782,-90.008,0	0/1:84:41,43:41:1455:43:1536:-113.247,0,-105.959	1/1:45:0,45:0:0:45:1597:-144.012,-13.5464,0	1/1:64:0,64:0:0:64:2265:-204.111,-19.2659,0	0/1:127:60,67:60:2134:67:2389:-177.036,0,-154.096	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:62:36,26:36:1279:26:932:-65.535,0,-96.7486	1/1:56:0,56:0:0:56:1995:-179.823,-16.8577,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:41:21,20:21:748:20:712:-52.0644,0,-55.3031	0/1:69:46,23:46:1631:23:828:-54.073,0,-126.307	1/1:100:0,100:0:0:100:3588:-323.126,-30.103,0	1/1:76:0,76:0:0:76:2723:-245.312,-22.8783,0
chr11	8151469	.	T	A	22348.9	PASS	AB=0.567762;ABP=91.5909;AC=44;AF=0.236559;AN=186;AO=1298;CIGAR=1X;DP=4193;DPB=4193;DPRA=1.50968;EPP=2821.58;EPPR=6289.42;GTI=7;LEN=1;MEANALT=1;MQM=56.51;MQMR=57.542;NS=93;NUMALT=1;ODDS=0.309073;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46380;QR=103431;RO=2895;RPL=0;RPP=2821.58;RPPR=6289.42;RPR=1298;RUN=1;SAF=0;SAP=2821.58;SAR=1298;SRF=0;SRP=6289.42;SRR=2895;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1808	0/1:45:9,36:9:324:36:1280:-101.794,0,-15.916	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.038	0/1:122:50,72:50:1781:72:2571:-194.704,0,-123.79	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7241	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7701	0/0:25:25,0:25:900:0:0:0,-7.52575,-80.9247	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.188	0/1:30:9,21:9:305:21:752:-58.8425,0,-18.6542	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.138	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9099	0/1:35:19,16:19:684:16:576:-41.6021,0,-51.2877	0/1:35:17,18:17:604:18:648:-47.9893,0,-43.9466	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.575	0/1:46:22,24:22:792:24:864:-64.1955,0,-57.6833	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.749	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.2968	0/1:19:10,9:10:360:9:324:-23.765,0,-26.9853	0/1:15:9,6:9:324:6:208:-14.5058,0,-24.9571	0/1:118:43,75:43:1521:75:2673:-205.175,0,-101.658	0/0:68:68,0:68:2398:0:0:0,-20.47,-215.86	0/1:77:14,63:14:500:63:2264:-180.561,0,-22.1283	0/1:38:14,24:14:481:24:864:-66.4536,0,-32.0828	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.4076	0/1:6:5,1:5:180:1:36:-1.67452,0,-14.7362	0/1:146:64,82:64:2285:82:2931:-219.934,0,-161.855	0/0:69:69,0:69:2443:0:0:0,-20.7711,-219.896	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.557	0/0:148:148,0:148:5241:0:0:0,-44.5524,-471.765	0/1:48:20,28:20:708:28:1000:-75.7809,0,-49.5385	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.086	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.40784	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0704	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.297	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59457	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2403	0/1:111:59,52:59:2116:52:1851:-133.384,0,-157.063	0/1:59:27,32:27:964:32:1148:-85.7546,0,-69.1792	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.1808	.:.:.:.:.:.:.:.	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.175	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.2137	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.458	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.616	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9297	0/1:38:17,21:17:608:21:756:-56.4203,0,-43.6129	0/1:48:18,30:18:648:30:1072:-82.2579,0,-44.142	0/0:94:94,0:94:3341:0:0:0,-28.2968,-300.82	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.588	0/1:95:51,44:51:1832:44:1571:-113.019,0,-136.38	0/0:38:36,2:36:1292:2:72:0,-4.69696,-109.813	1/1:14:1,13:1:36:13:464:-38.4782,-0.616145,0	0/0:49:49,0:49:1736:0:0:0,-14.7505,-156.19	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	1/1:6:0,6:0:0:6:216:-19.7762,-1.80618,0	0/1:72:24,48:24:864:48:1692:-130.594,0,-56.3695	0/1:16:2,14:2:72:14:504:-40.7914,0,-2.02024	0/1:10:1,9:1:36:9:324:-26.447,0,-0.587975	0/1:6:1,5:1:32:5:180:-14.7302,0,-1.39313	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.2501	0/1:51:27,24:27:972:24:860:-62.2648,0,-72.4053	1/1:12:1,11:1:36:11:396:-32.3656,-0.0140851,0	0/1:188:77,111:77:2753:111:3984:-302.037,0,-191.274	0/0:67:65,2:65:2325:2:72:0,-13.3355,-202.587	0/1:46:19,27:19:680:27:960:-72.7869,0,-47.6515	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.449	0/1:98:32,66:32:1152:66:2352:-182.224,0,-74.4472	0/0:83:81,2:81:2885:2:72:0,-18.1539,-252.826	0/1:20:11,9:11:396:9:320:-23.0934,0,-29.8397	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.0546	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:45:19,26:19:671:26:917:-69.1922,0,-47.1365	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.48	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.521	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.503	0/1:161:84,77:84:3020:77:2760:-199.961,0,-223.517	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.8264	0/1:79:53,26:53:1896:26:914:-58.1905,0,-146.952	0/1:12:5,7:5:180:7:252:-19.4008,0,-12.9227	0/1:62:30,32:30:1061:32:1136:-83.7857,0,-77.0874	0/0:71:71,0:71:2522:0:0:0,-21.3731,-226.259	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.708	0/1:40:18,22:18:648:22:784:-58.8057,0,-46.6091	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.562	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:58:30,28:30:1080:28:1008:-73.5315,0,-80.007	0/0:16:15,1:15:536:1:36:0,-1.31378,-44.895	0/1:42:20,22:20:720:22:788:-58.5513,0,-52.0958	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.104	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.8349	0/1:55:16,39:16:572:39:1392:-108.592,0,-35.2311	0/1:29:14,15:14:489:15:536:-39.6765,0,-35.609	0/0:128:128,0:128:4596:0:0:0,-38.5318,-413.1	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.901
chr11	8151524	.	A	C	59720.3	PASS	AB=0.423129;ABP=117.52;AC=143;AF=0.768817;AN=186;AO=2907;CIGAR=1X;DP=4229;DPB=4229;DPRA=7.65036;EPP=6315.48;EPPR=2869.35;GTI=6;LEN=1;MEANALT=1.02174;MQM=57.5029;MQMR=56.5689;NS=93;NUMALT=1;ODDS=0.473722;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=103948;QR=47281;RO=1320;RPL=2907;RPP=6315.48;RPPR=2869.35;RPR=0;RUN=1;SAF=0;SAP=6315.48;SAR=2907;SRF=0;SRP=2869.35;SRR=1320;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:464:-42.0558,-3.91339,0	0/1:46:37,9:37:1286:9:309:-14.2559,0,-102.032	1/1:64:0,64:0:0:64:2288:-205.747,-19.2659,0	0/1:123:75,48:75:2688:48:1716:-117.647,0,-204.862	1/1:10:0,10:0:0:10:356:-32.3619,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7701,-1.80618,0	1/1:26:0,26:0:0:26:921:-82.8427,-7.82678,0	1/1:40:0,40:0:0:40:1420:-127.853,-12.0412,0	0/1:30:21,9:21:756:9:324:-20.3775,0,-59.2021	1/1:42:1,41:1:32:41:1451:-127.581,-9.44395,0	1/1:28:0,28:0:0:28:989:-89.3171,-8.42884,0	0/1:35:16,19:16:576:19:684:-51.2877,0,-41.6021	0/1:36:19,17:19:680:17:608:-44.005,0,-50.6153	1/1:41:0,41:0:0:41:1472:-132.642,-12.3422,0	0/1:46:24,22:24:864:22:792:-57.6833,0,-64.1955	1/1:32:0,32:0:0:32:1143:-103.121,-9.63296,0	1/1:21:0,21:0:0:21:756:-68.2968,-6.32163,0	0/1:20:10,10:10:360:10:360:-26.6842,0,-26.7001	0/1:15:6,9:6:216:9:324:-24.9571,0,-15.2343	0/1:119:75,44:75:2700:44:1576:-106.306,0,-207.297	1/1:68:0,68:0:0:68:2425:-218.312,-20.47,0	0/1:80:64,15:64:2296:15:540:-24.8803,0,-182.597	0/1:39:25,14:25:900:14:493:-32.8542,0,-69.3895	1/1:27:0,27:0:0:27:972:-87.6445,-8.12781,0	1/1:6:0,6:0:0:6:216:-19.6731,-1.80618,0	0/1:147:83,64:83:2984:64:2300:-162.921,0,-224.343	1/1:69:0,69:0:0:69:2461:-221.507,-20.7711,0	1/1:15:0,15:0:0:15:536:-48.4332,-4.51545,0	1/1:150:0,150:0:0:150:5383:-484.541,-45.1545,0	0/1:46:26,20:26:936:20:720:-51.1803,0,-70.6279	1/1:37:0,37:0:0:37:1328:-119.726,-11.1381,0	1/1:2:0,2:0:0:2:72:-6.7234,-0.60206,0	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.297,-1.20412,0	1/1:1:0,1:0:0:1:32:-3.19783,-0.30103,0	1/1:8:0,8:0:0:8:288:-26.2403,-2.40824,0	0/1:109:52,57:52:1864:57:2029:-150.005,0,-135.155	0/1:62:34,28:34:1212:28:1004:-71.8222,0,-90.6081	1/1:12:0,12:0:0:12:428:-38.8204,-3.61236,0	.:.:.:.:.:.:.:.	1/1:49:0,49:0:0:49:1760:-158.427,-14.7505,0	1/1:17:0,17:0:0:17:608:-54.8422,-5.11751,0	1/1:58:0,58:0:0:58:2054:-184.637,-17.4597,0	1/1:31:0,31:0:0:31:1089:-98.3101,-9.33193,0	1/1:17:0,17:0:0:17:612:-55.4072,-5.11751,0	0/1:38:21,17:21:756:17:608:-43.6129,0,-56.4203	0/1:49:31,18:31:1112:18:648:-43.841,0,-85.527	1/1:94:0,94:0:0:94:3353:-301.92,-28.2968,0	1/1:21:0,21:0:0:21:748:-67.6003,-6.32163,0	0/1:98:46,52:46:1652:52:1864:-138.354,0,-119.399	1/1:38:0,38:0:0:38:1356:-122.222,-11.4391,0	0/0:14:13,1:13:464:1:36:0,-0.616145,-38.4782	1/1:47:0,47:0:0:47:1677:-150.853,-14.1484,0	1/1:28:0,28:0:0:28:1008:-91.0079,-8.42884,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7762	0/1:72:47,24:47:1673:24:860:-55.9633,0,-128.983	0/1:16:14,2:14:504:2:72:-2.02024,0,-40.7914	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.447	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7302	1/1:15:0,15:0:0:15:540:-48.8463,-4.51545,0	0/1:53:26,27:26:936:27:972:-71.8032,0,-68.4946	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3656	0/1:189:113,76:113:4052:76:2728:-188.752,0,-307.854	1/1:66:2,64:2:72:64:2292:-199.621,-13.0345,0	0/1:46:28,18:28:996:18:648:-44.7766,0,-76.0222	1/1:50:0,50:0:0:50:1796:-161.801,-15.0515,0	0/1:96:65,31:65:2332:31:1108:-71.0901,0,-181.002	1/1:87:2,85:2:72:85:3048:-267.49,-19.358,0	0/1:20:9,11:9:324:11:387:-29.0943,0,-23.4549	1/1:18:0,18:0:0:18:647:-58.2543,-5.41854,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:43:26,17:26:936:17:608:-42.1062,0,-71.5067	1/1:33:0,33:0:0:33:1169:-105.303,-9.93399,0	1/1:34:0,34:0:0:34:1209:-108.888,-10.235,0	1/1:34:0,34:0:0:34:1220:-109.973,-10.235,0	0/1:159:77,82:77:2756:82:2948:-217.641,0,-200.153	1/1:22:0,22:0:0:22:777:-70.0829,-6.62266,0	0/1:78:26,52:26:917:52:1872:-145.09,0,-58.4874	0/1:15:9,6:9:320:6:216:-15.2547,0,-24.6126	0/1:63:34,29:34:1216:29:1040:-74.8355,0,-90.671	1/1:72:0,72:0:0:72:2554:-229.064,-21.6742,0	1/1:70:0,70:0:0:70:2505:-225.697,-21.0721,0	0/1:40:22,18:22:792:18:648:-46.6091,0,-59.5256	1/1:33:0,33:0:0:33:1173:-105.808,-9.93399,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:58:29,29:29:1029:29:1044:-76.7686,0,-75.418	1/1:17:0,17:0:0:17:612:-55.1466,-5.11751,0	0/1:44:25,19:25:900:19:675:-47.7064,0,-68.0217	1/1:45:0,45:0:0:45:1612:-145.105,-13.5464,0	1/1:19:0,19:0:0:19:684:-61.7907,-5.71957,0	0/1:58:43,15:43:1536:15:540:-31.4517,0,-120.523	0/1:27:13,14:13:468:14:496:-36.8278,0,-34.2339	1/1:129:0,129:0:0:129:4606:-414.189,-38.8329,0	1/1:43:0,43:0:0:43:1525:-137.4,-12.9443,0
chr11	8151660	.	T	C	178892	PASS	AB=0.510242;ABP=7.4139;AC=146;AF=0.776596;AN=188;AO=8524;CIGAR=1X;DP=10913;DPB=10913;DPRA=33.8696;EPP=18504;EPPR=5173.29;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.9964;MQMR=59.9929;NS=94;NUMALT=1;ODDS=0.122826;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=301439;QR=84901;RO=2385;RPL=0;RPP=18512.6;RPPR=5173.29;RPR=8524;RUN=1;SAF=1;SAP=18504;SAR=8523;SRF=0;SRP=5181.97;SRR=2385;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1045:-94.3575,-9.0309,0	0/1:187:96,91:96:3415:91:3242:-235.709,0,-251.203	1/1:122:2,120:2:72:120:4234:-374.405,-29.8889,0	0/1:172:82,89:82:2896:89:3130:-230.089,0,-209.04	1/1:58:0,58:0:0:58:2059:-185.579,-17.4597,0	1/1:49:1,48:1:36:48:1688:-148.605,-11.1522,0	1/1:144:0,144:0:0:144:5105:-459.597,-43.3483,0	1/1:210:0,210:0:0:210:7483:-673.516,-63.2163,0	0/1:79:37,42:37:1307:42:1496:-111.153,0,-94.1494	1/1:128:0,128:0:0:128:4559:-410.475,-38.5318,0	1/1:127:1,126:1:36:126:4441:-396.268,-34.6325,0	0/1:78:37,41:37:1310:41:1437:-106.143,0,-94.7198	0/1:97:38,59:38:1347:59:2062:-156.651,0,-92.3296	1/1:135:0,135:0:0:135:4722:-425.148,-40.6391,0	0/1:76:33,42:33:1176:42:1479:-110.506,0,-83.2495	1/1:83:0,83:0:0:83:2903:-261.507,-24.9855,0	1/1:105:1,104:1:36:104:3644:-324.568,-28.0099,0	0/1:73:36,37:36:1280:37:1300:-95.3233,0,-93.528	0/1:69:32,37:32:1124:37:1307:-97.1597,0,-80.6941	0/1:158:89,69:89:3184:69:2459:-174.001,0,-239.221	1/1:143:0,143:0:0:143:5111:-460.133,-43.0473,0	0/1:129:80,49:80:2860:49:1739:-117.961,0,-218.805	0/1:123:56,67:56:1999:67:2384:-177.79,0,-143.156	1/1:173:2,171:2:72:171:6037:-536.6,-45.2415,0	1/1:71:1,70:1:36:70:2511:-222.644,-17.7749,0	0/1:370:175,195:175:6221:195:6867:-506.725,0,-448.609	1/1:235:0,235:0:0:235:8373:-753.58,-70.7421,0	1/1:54:1,53:1:36:53:1865:-164.529,-12.6573,0	1/1:283:0,282:0:0:282:10009:-900.392,-84.8905,0	0/1:175:79,96:79:2817:96:3383:-252.004,0,-201.088	1/1:148:1,147:1:36:147:5201:-464.634,-40.9542,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:18:0,18:0:0:18:629:-56.9338,-5.41854,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:241:110,131:110:3881:131:4613:-342.791,0,-276.94	0/1:253:119,134:119:4243:134:4793:-355.364,0,-305.89	1/1:115:0,115:0:0:115:4066:-366.131,-34.6185,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:124:0,124:0:0:124:4396:-395.814,-37.3277,0	1/1:58:0,58:0:0:58:2043:-184.142,-17.4597,0	1/1:142:0,142:0:0:142:5059:-455.455,-42.7463,0	1/1:91:0,91:0:0:91:3218:-289.844,-27.3937,0	1/1:88:0,88:0:0:88:3124:-281.388,-26.4906,0	0/1:162:80,82:80:2863:82:2911:-213.458,0,-209.14	0/1:113:62,51:62:2224:51:1808:-128.983,0,-166.408	1/1:183:0,183:0:0:183:6507:-585.716,-55.0885,0	1/1:104:0,104:0:0:104:3685:-331.843,-31.3071,0	0/1:137:77,60:77:2735:60:2102:-148.205,0,-205.152	1/1:220:0,220:0:0:220:7819:-703.745,-66.2266,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:173:0,173:0:0:173:6124:-551.264,-52.0782,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:20:10,10:10:356:10:360:-26.7237,0,-26.3606	0/1:155:67,88:67:2380:88:3136:-235.807,0,-167.799	0/1:74:34,40:34:1203:40:1415:-105.357,0,-86.2988	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	1/1:88:0,88:0:0:88:3104:-279.587,-26.4906,0	0/1:205:103,102:103:3672:102:3525:-255.748,0,-268.974	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:189:92,97:92:3300:97:3437:-252.648,0,-240.324	1/1:248:1,247:1:36:247:8710:-780.302,-71.0572,0	0/1:97:47,50:47:1671:50:1780:-131.283,0,-121.477	1/1:101:0,101:0:0:101:3578:-322.228,-30.404,0	0/1:199:95,104:95:3383:104:3635:-267.451,0,-244.781	1/1:172:0,172:0:0:172:6129:-551.712,-51.7772,0	0/1:65:28,37:28:996:37:1278:-95.752,0,-70.3879	1/1:90:1,89:1:36:89:3115:-276.975,-23.4944,0	1/1:124:0,124:0:0:124:4370:-393.477,-37.3277,0	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	1/1:78:1,77:1:36:77:2748:-243.964,-19.8821,0	1/1:63:0,63:0:0:63:2248:-202.584,-18.9649,0	1/1:244:0,244:0:0:244:8638:-777.421,-73.4513,0	0/1:148:87,61:87:3112:61:2166:-150.653,0,-235.755	1/1:160:0,160:0:0:160:5665:-509.97,-48.1648,0	0/1:90:46,44:46:1639:44:1568:-114.319,0,-120.705	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:104:47,57:47:1692:57:1999:-148.874,0,-121.26	1/1:94:0,93:0:0:93:3282:-295.24,-27.9958,0	1/1:222:0,222:0:0:222:7873:-708.603,-66.8287,0	0/1:130:61,69:61:2168:69:2419:-178.832,0,-156.253	1/1:85:0,85:0:0:85:2933:-264.206,-25.5876,0	1/1:95:0,95:0:0:95:3358:-302.439,-28.5979,0	0/1:174:76,98:76:2720:98:3436:-257.075,0,-192.664	1/1:51:0,51:0:0:51:1795:-161.831,-15.3525,0	0/1:130:62,68:62:2180:68:2396:-176.762,0,-157.331	1/1:93:0,93:0:0:93:3273:-294.793,-27.9958,0	1/1:101:0,101:0:0:101:3555:-320.16,-30.404,0	0/1:252:134,118:134:4762:118:4142:-297.108,0,-352.881	0/1:67:38,29:38:1345:29:1019:-71.8523,0,-101.179	1/1:118:0,118:0:0:118:4184:-376.744,-35.5215,0	1/1:141:0,141:0:0:141:4938:-444.577,-42.4452,0
chr11	8179478	.	GCC	GCT,CCT	203748	PASS	AB=0.485992,0.509734;ABP=10.1887,6.47682;AC=144,42;AF=0.774194,0.225806;AN=186;AO=7235,2163;CIGAR=2M1X,1X1M1X;DP=9438;DPB=9438;DPRA=20.5065,1.08607;EPP=15618.2,4673.88;EPPR=22.5536;GTI=2;LEN=1,3;MEANALT=1.75,2.32558;MQM=59.9663,59.9154;MQMR=59.8889;NS=93;NUMALT=2;ODDS=0.0830036;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=258617,76285;QR=308;RO=9;RPL=11,3;RPP=15618.2,4673.88;RPPR=22.5536;RPR=7224,2160;RUN=1,1;SAF=0,0;SAP=15713.6,4699.91;SAR=7235,2163;SRF=0;SRP=22.5536;SRR=9;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38,0:0:0:38,0:1345,0:-121.348,-11.4391,0,-121.348,-11.4391,-121.348	1/2:108:0,51,57:0:0:51,57:1815,2014:-312.298,-164.374,-149.022,-148.278,0,-131.119	1/1:137:1,136,0:1:36:136,0:4892,0:-436.831,-37.6428,0,-437.132,-40.9401,-440.069	1/2:157:0,78,79:0:0:78,79:2785,2768:-452.636,-225.581,-202.1,-227.409,0,-203.627	1/1:63:0,63,0:0:0:63,0:2238,0:-201.68,-18.9649,0,-201.68,-18.9649,-201.68	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/1:85:0,85,0:0:0:85,0:3022,0:-272.208,-25.5876,0,-272.208,-25.5876,-272.208	1/1:179:0,178,0:0:0:178,0:6350,0:-570.404,-53.5833,0,-570.404,-53.5833,-570.404	1/2:142:0,76,66:0:0:76,66:2679,2338:-408.93,-190.811,-167.933,-218.472,0,-198.604	1/1:139:0,137,0:0:0:137,0:4901,0:-439.905,-41.2411,0,-439.905,-41.2411,-439.905	1/1:142:0,142,0:0:0:142,0:5072,0:-456.623,-42.7463,0,-456.623,-42.7463,-456.623	1/2:92:0,51,41:0:0:51,41:1802,1445:-264.754,-118.001,-102.649,-147.105,0,-134.763	1/2:74:0,32,41:0:0:32,41:1140,1457:-211.723,-118.801,-109.168,-92.994,0,-80.6517	1/1:113:0,113,0:0:0:113,0:4034,0:-363.245,-34.0164,0,-363.245,-34.0164,-363.245	1/2:90:0,48,41:0:0:48,41:1724,1456:-259.351,-118.711,-104.262,-140.714,0,-128.372	1/1:75:0,75,0:0:0:75,0:2696,0:-242.884,-22.5773,0,-242.884,-22.5773,-242.884	1/1:89:0,89,0:0:0:89,0:3200,0:-288.222,-26.7917,0,-288.222,-26.7917,-288.222	1/2:90:0,45,45:0:0:45,45:1578,1607:-259.778,-131.372,-117.825,-128.76,0,-115.214	1/2:67:0,27,39:0:0:27,39:968,1397:-193.028,-114.075,-105.947,-79.0943,0,-67.3541	1/2:130:0,62,68:0:0:62,68:2209,2373:-373.405,-193.348,-174.684,-180.409,0,-159.939	1/1:134:0,134,0:0:0:134,0:4781,0:-430.447,-40.338,0,-430.447,-40.338,-430.447	1/2:95:1,25,69:1:36:25,69:888,2466:-270.183,-198.126,-193.538,-69.416,0,-51.5826	1/2:88:1,37,50:1:28:37,50:1317,1756:-247.808,-140.771,-131.85,-105.193,0,-92.3583	1/1:111:0,110,0:0:0:110,0:3930,0:-353.642,-33.1133,0,-353.642,-33.1133,-353.642	1/1:60:1,59,0:1:36:59,0:2101,0:-185.759,-14.4635,0,-186.06,-17.7608,-188.998	1/2:355:0,200,154:0:0:200,154:7127,5410:-1021.1,-440.36,-380.154,-580.82,0,-534.462	1/1:204:0,203,0:0:0:203,0:7273,0:-654.259,-61.1091,0,-654.259,-61.1091,-654.259	1/1:54:0,54,0:0:0:54,0:1936,0:-174.516,-16.2556,0,-174.516,-16.2556,-174.516	1/1:180:0,180,0:0:0:180,0:6378,0:-574.096,-54.1854,0,-574.096,-54.1854,-574.096	1/2:94:0,55,39:0:0:55,39:1945,1369:-270.182,-111.766,-95.2093,-158.768,0,-147.027	1/1:101:0,100,0:0:0:100,0:3546,0:-319.077,-30.103,0,-319.077,-30.103,-319.077	1/2:9:0,3,6:0:0:3,6:108,216:-26.7966,-17.9843,-17.0812,-9.17208,0,-7.3659	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/2:236:0,113,123:0:0:113,123:4060,4318:-682.21,-350.995,-316.979,-331.569,0,-294.542	1/2:234:0,129,105:0:0:129,105:4605,3677:-674.952,-299.524,-260.692,-375.781,0,-344.173	1/1:84:0,84,0:0:0:84,0:3012,0:-271.311,-25.2865,0,-271.311,-25.2865,-271.311	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:107:0,107,0:0:0:107,0:3825,0:-344.445,-32.2102,0,-344.445,-32.2102,-344.445	1/1:49:0,49,0:0:0:49,0:1748,0:-157.604,-14.7505,0,-157.604,-14.7505,-157.604	1/1:132:0,131,0:0:0:131,0:4685,0:-421.45,-39.4349,0,-421.45,-39.4349,-421.45	1/1:67:0,67,0:0:0:67,0:2400,0:-216.254,-20.169,0,-216.254,-20.169,-216.254	1/1:48:0,48,0:0:0:48,0:1728,0:-155.805,-14.4494,0,-155.805,-14.4494,-155.805	1/2:125:0,66,59:0:0:66,59:2364,2060:-360.693,-167.897,-148.029,-193.15,0,-175.389	1/2:83:0,38,45:0:0:38,45:1364,1585:-240.658,-129.393,-117.953,-111.622,0,-98.0752	1/1:171:0,171,0:0:0:171,0:6136,0:-552.333,-51.4761,0,-552.333,-51.4761,-552.333	1/1:116:0,116,0:0:0:116,0:4126,0:-371.523,-34.9195,0,-371.523,-34.9195,-371.523	1/2:120:0,57,62:0:0:57,62:2037,2198:-345.143,-179.057,-161.898,-166.082,0,-147.418	1/1:199:0,199,0:0:0:199,0:7114,0:-640.316,-59.905,0,-640.316,-59.905,-640.316	1/2:6:0,3,3:0:0:3,3:108,100:-17.252,-8.42638,-7.52329,-9.17208,0,-8.26899	1/1:123:0,123,0:0:0:123,0:4408,0:-396.884,-37.0267,0,-396.884,-37.0267,-396.884	1/1:44:0,44,0:0:0:44,0:1576,0:-142.128,-13.2453,0,-142.128,-13.2453,-142.128	1/2:10:0,2,8:0:0:2,8:72,288:-29.734,-23.8592,-23.2571,-6.23466,0,-3.82642	1/2:122:0,55,66:0:0:55,66:1949,2317:-347.332,-188.557,-172.001,-158.768,0,-138.9	1/2:54:0,28,26:0:0:28,26:1008,912:-1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chr11	8185860	.	A	G	72591.6	PASS	AB=0.46881;ABP=20.6196;AC=146;AF=0.776596;AN=188;AO=3448;CIGAR=1X;DP=4568;DPB=4568;DPRA=9.8129;EPP=7490.25;EPPR=2426.37;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9945;MQMR=60;NS=94;NUMALT=1;ODDS=0.0738637;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122841;QR=40026;RO=1116;RPL=3448;RPP=7490.25;RPPR=2426.37;RPR=0;RUN=1;SAF=0;SAP=7490.25;SAR=3448;SRF=0;SRP=2426.37;SRR=1116;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:75:40,35:40:1436:35:1256:-90.768,0,-106.96	1/1:94:0,93:0:0:93:3320:-298.659,-27.9958,0	0/1:63:33,30:33:1188:30:1068:-77.4672,0,-88.2637	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:86:1,85:1:36:85:3022:-268.613,-22.2903,0	0/1:26:13,13:13:464:13:464:-34.2707,0,-34.2707	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:76:0,76:0:0:76:2702:-243.422,-22.8783,0	0/1:71:25,46:25:887:46:1620:-124.714,0,-58.775	0/1:58:34,24:34:1220:24:851:-59.4497,0,-92.6471	1/1:77:0,77:0:0:77:2730:-245.943,-23.1793,0	0/1:39:18,21:18:648:21:752:-56.2661,0,-46.9117	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:62:1,61:1:36:61:2180:-192.868,-15.0656,0	0/1:47:27,20:27:968:20:716:-50.6193,0,-73.289	0/1:33:15,18:15:531:18:648:-48.7179,0,-38.1879	0/1:79:39,40:39:1396:40:1436:-105.756,0,-102.158	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:62:45,17:45:1605:17:596:-35.3039,0,-126.074	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:146:58,88:58:2084:88:3122:-237.256,0,-143.88	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	1/1:23:0,23:0:0:23:815:-73.6708,-6.92369,0	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	0/1:47:21,26:21:752:26:928:-69.6898,0,-53.8578	1/1:45:0,45:0:0:45:1593:-143.658,-13.5464,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:5:0,5:0:0:5:179:-16.4604,-1.50515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/1:156:68,88:68:2439:88:3147:-236.494,0,-172.804	0/1:106:60,46:60:2141:46:1631:-115.169,0,-161.047	1/1:75:0,75:0:0:75:2674:-240.905,-22.5773,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:40:0,40:0:0:40:1401:-126.385,-12.0412,0	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	1/1:40:0,40:0:0:40:1408:-127.014,-12.0412,0	1/1:43:0,43:0:0:43:1518:-136.912,-12.9443,0	1/1:43:0,43:0:0:43:1528:-137.813,-12.9443,0	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	0/1:59:37,22:37:1332:22:788:-53.484,0,-102.422	1/1:70:0,70:0:0:70:2499:-225.162,-21.0721,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:54:32,22:32:1152:22:788:-54.9892,0,-87.7345	1/1:43:0,42:0:0:42:1496:-134.711,-12.6433,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:78:0,78:0:0:78:2792:-251.52,-23.4803,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/1:42:25,17:25:900:17:591:-40.872,0,-68.6778	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:18:12,6:12:432:6:212:-14.0063,0,-33.8027	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:99:57,42:57:2039:42:1488:-104.412,0,-153.979	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:83:54,29:54:1944:29:1036:-68.5684,0,-150.25	1/1:59:1,58:1:36:58:2068:-182.793,-14.1625,0	0/1:37:16,21:16:572:21:748:-56.5072,0,-40.6753	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	0/1:37:19,18:19:676:18:636:-46.4299,0,-50.0299	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:74:1,73:1:36:73:2599:-230.56,-18.6779,0	0/1:18:9,9:9:320:9:304:-22.2685,0,-23.7238	1/1:48:0,48:0:0:48:1711:-154.274,-14.4494,0	1/1:38:0,38:0:0:38:1344:-121.26,-11.4391,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:64:41,22:41:1472:22:784:-51.5594,0,-113.451	1/1:122:0,122:0:0:122:4364:-392.935,-36.7257,0	0/1:55:24,31:24:864:31:1108:-83.4743,0,-61.5259	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	1/1:54:0,53:0:0:53:1871:-168.302,-15.9546,0	1/1:56:0,56:0:0:56:1986:-179.013,-16.8577,0	0/1:73:40,33:40:1440:33:1188:-85.2534,0,-107.923	1/1:52:0,52:0:0:52:1848:-166.6,-15.6536,0	1/1:67:0,67:0:0:67:2383:-214.728,-20.169,0	0/1:82:38,44:38:1368:44:1524:-112.763,0,-98.7364	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:71:42,29:42:1508:29:1026:-71.279,0,-114.641	1/1:71:0,71:0:0:71:2539:-228.76,-21.3731,0	1/1:63:0,63:0:0:63:2219:-199.973,-18.9649,0	0/1:107:56,51:56:2008:51:1818:-131.69,0,-148.783	0/1:44:31,13:31:1116:13:455:-28.0366,0,-87.5064	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:82:1,81:1:36:81:2899:-257.548,-21.0862,0
chr11	8203583	.	G	C	30374.8	PASS	AB=0.489681;ABP=6.46103;AC=41;AF=0.22043;AN=186;AO=1838;CIGAR=1X;DP=8353;DPB=8353;DPRA=1.02731;EPP=3994.18;EPPR=14139.3;GTI=0;LEN=1;MEANALT=1.04444;MQM=59.9472;MQMR=59.9908;NS=93;NUMALT=1;ODDS=2.73138;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65529;QR=231975;RO=6510;RPL=0;RPP=3994.18;RPPR=14139.3;RPR=1838;RUN=1;SAF=0;SAP=3994.18;SAR=1838;SRF=0;SRP=14139.3;SRR=6510;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:110:56,54:56:1972:54:1930:-140.863,0,-144.639	0/0:56:56,0:56:1961:0:0:0,-16.8577,-176.761	0/1:195:100,95:100:3569:95:3379:-245.586,0,-262.716	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.112	0/0:119:119,0:119:4229:0:0:0,-35.8226,-380.789	0/0:128:128,0:128:4561:0:0:0,-38.5318,-410.654	0/1:57:30,27:30:1076:27:968:-70.2787,0,-79.9941	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:105:105,0:105:3747:0:0:0,-31.6081,-337.431	0/1:67:37,30:37:1305:30:1076:-76.9838,0,-97.5804	0/1:101:47,54:47:1659:54:1923:-142.942,0,-119.193	0/0:151:150,0:150:5350:0:0:0,-45.1545,-481.273	0/1:62:36,26:36:1292:26:932:-65.535,0,-97.9199	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/1:76:38,37:38:1364:37:1332:-97.2842,0,-100.163	0/1:62:36,26:36:1292:26:932:-65.535,0,-97.9199	0/1:197:101,96:101:3611:96:3423:-248.971,0,-265.893	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/1:111:39,72:39:1400:72:2561:-197.325,0,-92.8849	0/1:41:18,23:18:648:23:828:-62.5019,0,-46.3097	0/0:55:55,0:55:1943:0:0:0,-16.5566,-175.143	0/0:54:54,0:54:1909:0:0:0,-16.2556,-172.086	0/1:186:83,103:83:2963:103:3687:-276.04,0,-210.911	0/0:106:106,0:106:3774:0:0:0,-31.9092,-339.86	0/0:43:43,0:43:1526:0:0:0,-12.9443,-137.632	0/0:268:268,0:268:9547:0:0:0,-80.676,-859.19	0/1:200:84,116:84:2991:116:4139:-312.488,0,-209.216	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.743	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:205:104,101:104:3697:101:3583:-260.96,0,-271.221	0/1:162:92,70:92:3291:70:2507:-177.115,0,-247.642	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:156:156,0:156:5573:0:0:0,-46.9607,-501.693	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/0:115:115,0:115:4112:0:0:0,-34.6184,-370.265	0/0:80:80,0:80:2845:0:0:0,-24.0824,-256.218	0/0:88:88,0:88:3100:0:0:0,-26.4906,-279.228	0/1:31:15,16:15:523:16:576:-42.8431,0,-38.0665	0/1:112:64,48:64:2268:48:1719:-121.279,0,-170.665	0/0:176:176,0:176:6259:0:0:0,-52.9813,-563.404	0/0:110:109,0:109:3903:0:0:0,-32.8123,-350.997	0/1:111:61,50:61:2184:50:1789:-127.876,0,-163.412	0/0:167:167,0:167:5934:0:0:0,-50.272,-534.167	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:121:121,0:121:4331:0:0:0,-36.4246,-389.965	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:19:15,4:15:536:4:144:-7.59405,0,-42.8552	0/1:65:30,35:30:1072:35:1256:-93.7783,0,-77.2255	0/1:37:17,20:17:581:20:720:-53.9907,0,-41.4721	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:10:3,7:3:84:7:248:-19.6539,0,-4.82784	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.828	0/1:172:91,81:91:3245:81:2895:-209.008,0,-240.493	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:122:52,69:52:1856:69:2452:-184.148,0,-130.535	0/0:119:118,1:118:4205:1:36:0,-32.2243,-375.033	0/1:83:37,46:37:1314:46:1639:-122.812,0,-93.5747	0/0:39:38,1:38:1356:1:27:0,-9.04039,-119.641	0/1:112:48,64:48:1719:64:2292:-172.826,0,-121.279	0/0:113:105,8:105:3743:8:288:0,-7.74898,-310.801	0/1:37:20,17:20:716:17:604:-43.5525,0,-53.6296	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:139:139,0:139:4947:0:0:0,-41.8432,-445.38	0/1:18:10,8:10:352:8:288:-20.8489,0,-26.5997	0/0:134:134,0:134:4758:0:0:0,-40.338,-428.378	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/0:150:149,0:149:5286:0:0:0,-44.8535,-475.515	0/1:151:97,54:97:3454:54:1928:-128.341,0,-265.617	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.029	0/1:65:45,20:45:1603:20:693:-43.1227,0,-124.948	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:82:36,46:36:1292:46:1640:-123.204,0,-91.8993	0/0:104:104,0:104:3714:0:0:0,-31.3071,-334.461	0/0:140:140,0:140:4969:0:0:0,-42.1442,-447.357	0/1:134:75,59:75:2679:59:2104:-149.291,0,-201.017	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.484	0/0:102:102,0:102:3615:0:0:0,-30.7051,-325.556	0/1:155:89,66:89:3172:66:2341:-164.289,0,-239.046	0/0:40:40,0:40:1415:0:0:0,-12.0412,-127.647	0/1:99:53,46:53:1873:46:1631:-117.276,0,-139.045	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:79:79,0:79:2811:0:0:0,-23.7814,-253.23	0/1:187:102,85:102:3621:85:2984:-212.441,0,-269.804	0/1:65:28,37:28:1004:37:1319:-99.4442,0,-71.1089	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/0:96:95,1:95:3389:1:36:0,-25.3006,-301.626
chr11	8203592	.	CTTC	CTTT,TTTT	179333	PASS	AB=0.499466,0.497065;ABP=3.01957,3.29071;AC=145,41;AF=0.77957,0.22043;AN=186;AO=6435,1874;CIGAR=3M1X,1X2M1X;DP=8342;DPB=8342.75;DPRA=0,1.03741;EPP=13976.4,4072.35;EPPR=16.0391;GTI=0;LEN=1,4;MEANALT=1.74194,2.26667;MQM=59.9938,59.945;MQMR=60;NS=93;NUMALT=2;ODDS=1.34483;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=35,35;PQR=0;PRO=0;QA=229644,66474;QR=200;RO=6;RPL=0,0;RPP=13976.4,4072.35;RPPR=16.0391;RPR=6435,1874;RUN=1,1;SAF=0,0;SAP=13976.4,4072.35;SAR=6435,1874;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/2:111:0,54,56:0:0:54,56:1921,1994:-319.09,-162.536,-146.28,-156.569,0,-139.712	1/1:56:0,56,0:0:0:56,0:1991,0:-179.464,-16.8577,0,-179.464,-16.8577,-179.464	1/2:194:0,98,96:0:0:98,96:3512,3428:-566.26,-279.828,-250.327,-286.789,0,-257.89	1/1:60:0,60,0:0:0:60,0:2144,0:-193.228,-18.0618,0,-193.228,-18.0618,-193.228	1/1:53:1,52,0:1:26:52,0:1853,0:-164.447,-13.3548,0,-164.748,-15.6536,-166.785	1/1:119:0,119,0:0:0:119,0:4253,0:-382.919,-35.8226,0,-382.919,-35.8226,-382.919	1/1:131:0,131,0:0:0:131,0:4662,0:-419.741,-39.4349,0,-419.741,-39.4349,-419.741	1/2:57:0,30,27:0:0:30,27:1068,962:-165.814,-78.7688,-69.7379,-87.4012,0,-79.2734	1/1:51:0,51,0:0:0:51,0:1828,0:-164.801,-15.3525,0,-164.801,-15.3525,-164.801	1/1:104:0,104,0:0:0:104,0:3685,0:-331.733,-31.3071,0,-331.733,-31.3071,-331.733	1/2:67:0,38,29:0:0:38,29:1352,1040:-195.369,-85.1848,-73.7456,-110.541,0,-101.811	1/2:102:0,46,55:0:0:46,55:1599,1946:-288.498,-158.5,-144.652,-129.989,0,-113.432	1/1:150:0,148,0:0:0:148,0:5291,0:-475.986,-44.5524,0,-475.986,-44.5524,-475.986	1/2:62:0,36,26:0:0:36,26:1292,928:-181.401,-76.0119,-65.1748,-105.747,0,-97.9199	1/1:65:0,65,0:0:0:65,0:2324,0:-209.42,-19.567,0,-209.42,-19.567,-209.42	1/1:92:0,92,0:0:0:92,0:3284,0:-295.78,-27.6948,0,-295.78,-27.6948,-295.78	1/2:75:0,37,38:0:0:37,38:1308,1350:-216.889,-110.36,-99.222,-106.883,0,-95.4443	1/2:59:0,33,26:0:0:33,26:1176,923:-171.419,-75.5609,-65.6269,-96.2138,0,-88.387	1/2:198:0,101,96:0:0:101,96:3608,3376:-568.959,-274.79,-244.386,-294.163,0,-265.264	1/1:81:0,81,0:0:0:81,0:2912,0:-262.315,-24.3834,0,-262.315,-24.3834,-262.315	1/2:109:0,37,72:0:0:37,72:1313,2565:-316.403,-209.426,-198.288,-107.332,0,-85.6574	1/2:42:0,17,25:0:0:17,25:597,886:-121.117,-72.5309,-67.4134,-48.9386,0,-41.4129	1/1:55:0,55,0:0:0:55,0:1972,0:-177.755,-16.5567,0,-177.755,-16.5567,-177.755	1/1:52:0,52,0:0:0:52,0:1864,0:-168.039,-15.6536,0,-168.039,-15.6536,-168.039	1/2:189:0,82,107:0:0:82,107:2936,3774:-547.088,-307.654,-282.969,-239.79,0,-207.58	1/1:108:0,108,0:0:0:108,0:3863,0:-347.865,-32.5112,0,-347.865,-32.5112,-347.865	1/1:43:0,43,0:0:0:43,0:1540,0:-138.893,-12.9443,0,-138.893,-12.9443,-138.893	1/1:266:0,265,0:0:0:265,0:9470,0:-852.051,-79.773,0,-852.051,-79.773,-852.051	1/2:203:0,86,117:0:0:86,117:3080,4171:-591.536,-340.354,-314.465,-251.54,0,-216.319	1/1:83:0,83,0:0:0:83,0:2972,0:-267.713,-24.9855,0,-267.713,-24.9855,-267.713	1/2:12:0,5,7:0:0:5,7:180,246:-35.065,-20.3744,-18.8692,-15.0469,0,-12.9397	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:209:0,103,104:0:0:103,104:3678,3683:-599.933,-300.072,-269.066,-299.922,0,-268.615	1/2:166:0,94,72:0:0:94,72:3322,2557:-479.253,-208.706,-180.41,-270.901,0,-249.227	1/1:74:0,74,0:0:0:74,0:2639,0:-237.757,-22.2762,0,-237.757,-22.2762,-237.757	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:156:0,156,0:0:0:156,0:5557,0:-500.257,-46.9607,0,-500.257,-46.9607,-500.257	1/1:41:0,41,0:0:0:41,0:1448,0:-130.616,-12.3422,0,-130.616,-12.3422,-130.616	1/1:111:0,111,0:0:0:111,0:3947,0:-355.423,-33.4143,0,-355.423,-33.4143,-355.423	1/1:78:0,78,0:0:0:78,0:2780,0:-250.442,-23.4803,0,-250.442,-23.4803,-250.442	1/1:89:0,89,0:0:0:89,0:3176,0:-286.065,-26.7917,0,-286.065,-26.7917,-286.065	1/2:30:0,14,16:0:0:14,16:504,575:-88.3923,-47.2682,-43.0538,-41.4837,0,-36.6672	1/2:111:0,62,48:0:0:62,48:2212,1717:-320.45,-140.124,-121.46,-180.439,0,-165.99	1/1:178:0,175,0:0:0:175,0:6260,0:-563.172,-52.6803,0,-563.172,-52.6803,-563.172	1/1:102:0,102,0:0:0:102,0:3628,0:-326.725,-30.7051,0,-326.725,-30.7051,-326.725	1/2:110:0,60,50:0:0:60,50:2125,1798:-320.135,-147.037,-128.975,-173.455,0,-158.404	1/1:164:0,163,0:0:0:163,0:5829,0:-524.362,-49.0679,0,-524.362,-49.0679,-524.362	1/2:5:0,2,3:0:0:2,3:72,106:-14.8636,-8.98607,-8.38401,-6.23466,0,-5.33157	1/1:121:0,121,0:0:0:121,0:4313,0:-388.346,-36.4246,0,-388.346,-36.4246,-388.346	1/1:48:0,47,0:0:0:47,0:1688,0:-151.847,-14.1484,0,-151.847,-14.1484,-151.847	1/2:19:0,15,4:0:0:15,4:536,141:-55.539,-11.833,-7.31753,-44.0594,0,-42.8552	1/2:65:0,29,36:0:0:29,36:1036,1290:-190.034,-105.567,-96.8372,-84.824,0,-73.987	1/2:39:0,18,21:0:0:18,21:626,739:-111.406,-60.5113,-55.0927,-51.2445,0,-44.9229	1/2:5:0,3,2:0:0:3,2:108,72:-15.0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chr11	8299077	.	T	C	26465.4	PASS	AB=0.538604;ABP=31.0085;AC=42;AF=0.223404;AN=188;AO=1177;CIGAR=1X;DP=4741;DPB=4741;DPRA=1.19549;EPP=2550.15;EPPR=7649.01;GTI=0;LEN=1;MEANALT=1.04762;MQM=59.9448;MQMR=59.9458;NS=94;NUMALT=1;ODDS=0.600431;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41381;QR=126056;RO=3561;RPL=610;RPP=6.42156;RPPR=22.9877;RPR=567;RUN=1;SAF=611;SAP=6.74627;SAR=566;SRF=1881;SRP=27.6465;SRR=1680;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:25:18,7:18:636:7:252:-15.5032,0,-50.0423	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.652	0/1:51:23,28:23:816:28:1004:-75.3096,0,-58.4092	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/0:22:22,0:22:783:0:0:0,-6.62266,-70.7929	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/0:47:47,0:47:1662:0:0:0,-14.1484,-149.866	0/1:36:18,18:18:640:18:644:-47.4535,0,-47.0922	0/0:42:42,0:42:1487:0:0:0,-12.6433,-134.124	0/0:89:88,1:88:3081:1:36:0,-23.1934,-273.92	0/1:132:49,83:49:1725:83:2854:-217.363,0,-115.797	0/1:109:53,56:53:1857:56:1936:-141.699,0,-134.591	0/0:88:88,0:88:3137:0:0:0,-26.4906,-282.55	0/1:92:45,47:45:1569:47:1683:-124.062,0,-113.8	0/0:82:82,0:82:2878:0:0:0,-24.6845,-259.257	0/0:85:85,0:85:3015:0:0:0,-25.5875,-271.579	0/1:61:30,31:30:1068:31:1108:-81.6682,0,-78.0692	0/1:98:52,46:52:1838:46:1620:-116.585,0,-136.198	0/1:48:25,23:25:892:23:798:-57.6872,0,-66.1498	0/0:45:45,0:45:1595:0:0:0,-13.5463,-143.84	0/1:9:7,1:7:252:1:36:-0.830208,0,-20.2609	0/1:29:16,13:16:563:13:463:-33.2772,0,-42.2693	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:25:25,0:25:872:0:0:0,-7.52575,-78.7936	0/1:74:40,34:40:1436:34:1212:-87.1101,0,-107.261	0/0:77:77,0:77:2743:0:0:0,-23.1793,-247.104	0/0:47:47,0:47:1658:0:0:0,-14.1484,-149.506	0/0:59:59,0:59:2102:0:0:0,-17.7608,-189.448	0/1:18:13,5:13:468:5:176:-10.7665,0,-37.0411	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6688	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:212:108,103:108:3841:103:3650:-264.826,0,-282	0/1:15:9,6:9:315:6:216:-15.2751,0,-24.1718	0/0:89:89,0:89:3145:0:0:0,-26.7917,-283.274	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:60:60,0:60:2096:0:0:0,-18.0618,-188.908	0/0:50:50,0:50:1771:0:0:0,-15.0515,-159.666	0/0:97:97,0:97:3422:0:0:0,-29.1999,-308.196	0/0:77:77,0:77:2668:0:0:0,-23.1793,-240.366	0/1:32:13,19:13:468:19:672:-51.1739,0,-32.8267	0/1:23:9,14:9:311:14:491:-37.5928,0,-21.4	0/0:42:41,1:41:1472:1:36:0,-9.04498,-129.092	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/1:47:22,25:22:770:25:896:-66.8119,0,-55.4709	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:40:15,25:15:536:25:865:-66.1218,0,-36.5336	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/1:5:2,3:2:68:3:104:-8.19766,0,-4.95256	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/1:82:37,45:37:1324:45:1576:-117.443,0,-94.7776	0/0:3:3,0:3:96:0:0:0,-0.90309,-8.95808	0/1:37:11,26:11:388:26:910:-70.9171,0,-24.1193	0/0:44:44,0:44:1555:0:0:0,-13.2453,-140.241	0/1:33:15,18:15:531:18:635:-47.543,0,-38.1879	0/0:25:25,0:25:879:0:0:0,-7.52575,-79.4244	0/1:42:16,26:16:572:26:924:-70.8344,0,-39.1138	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:85:41,44:41:1446:44:1533:-112.67,0,-104.847	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:93:93,0:93:3310:0:0:0,-27.9958,-298.119	0/1:14:4,10:4:144:10:343:-26.9861,0,-9.0992	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0262	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:69:69,0:69:2462:0:0:0,-20.7711,-221.83	0/1:43:25,18:25:877:18:644:-45.3463,0,-66.3009	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:50:24,26:24:860:26:928:-68.7821,0,-62.6703	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:39:20,19:20:716:19:671:-48.9756,0,-53.0275	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.26	0/1:68:28,40:28:989:40:1399:-105.734,0,-68.8382	0/0:78:77,0:77:2726:0:0:0,-23.1793,-245.219	0/0:84:84,0:84:2935:0:0:0,-25.2865,-264.369	0/1:167:76,91:76:2683:91:3196:-237.591,0,-191.419	0/0:46:46,0:46:1617:0:0:0,-13.8474,-145.781	0/1:83:34,49:34:1216:49:1702:-128.476,0,-84.7611	0/0:93:93,0:93:3287:0:0:0,-27.9958,-296.014	0/0:87:87,0:87:3059:0:0:0,-26.1896,-275.529	0/1:144:65,79:65:2271:79:2756:-204.928,0,-161.297	0/1:99:25,74:25:892:74:2588:-203.365,0,-50.7977	0/0:26:25,1:25:888:1:36:0,-4.2285,-76.6408	0/0:158:158,0:158:5545:0:0:0,-47.5627,-499.176
chr11	8299089	.	C	T	95102.8	PASS	AB=0.462714;ABP=29.081;AC=146;AF=0.776596;AN=188;AO=3536;CIGAR=1X;DP=4711;DPB=4711;DPRA=19.3805;EPP=17.5744;EPPR=7.64228;GTI=0;LEN=1;MEANALT=1.02198;MQM=59.9474;MQMR=59.9846;NS=94;NUMALT=1;ODDS=0.61413;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125333;QR=41411;RO=1172;RPL=3531;RPP=7637.97;RPPR=2547.98;RPR=5;RUN=1;SAF=1840;SAP=15.7444;SAR=1696;SRF=611;SRP=7.64228;SRR=561;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:797:-72.0473,-6.92369,0	0/1:26:7,19:7:252:19:664:-52.2577,0,-15.2022	1/1:66:0,66:0:0:66:2338:-210.673,-19.868,0	0/1:52:28,24:28:1004:24:860:-62.0683,0,-75.0085	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:48:0,48:0:0:48:1723:-155.356,-14.4494,0	0/1:39:18,21:18:648:21:748:-55.7471,0,-46.9117	1/1:42:0,42:0:0:42:1488:-134.212,-12.6433,0	1/1:84:0,84:0:0:84:2947:-265.462,-25.2865,0	0/1:135:83,52:83:2921:52:1846:-125.78,0,-222.485	0/1:109:57,52:57:2002:52:1872:-135.942,0,-147.64	1/1:84:0,84:0:0:84:2956:-266.272,-25.2865,0	0/1:91:47,44:47:1684:44:1576:-114.737,0,-124.453	1/1:83:0,83:0:0:83:2942:-265.015,-24.9855,0	1/1:84:0,84:0:0:84:2959:-266.542,-25.2865,0	0/1:58:30,28:30:1063:28:987:-71.6833,0,-78.5211	0/1:100:46,54:46:1648:54:1914:-142.435,0,-118.506	0/1:47:23,24:23:809:24:852:-62.852,0,-58.9799	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:29:13,16:13:464:16:576:-43.4451,0,-33.3676	1/1:31:1,30:1:36:30:1068:-92.8338,-5.73366,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:73:35,38:35:1256:38:1348:-99.6451,0,-91.3701	1/1:75:0,75:0:0:75:2663:-239.908,-22.5773,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:56:0,56:0:0:56:1990:-179.373,-16.8577,0	0/1:18:5,13:5:176:13:460:-36.3168,0,-10.7665	1/1:29:0,29:0:0:29:1032:-93.1889,-8.72987,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:206:101,105:101:3588:105:3738:-274.601,0,-261.117	0/1:14:6,8:6:212:8:280:-21.3249,0,-15.2104	1/1:91:0,89:0:0:89:3183:-286.398,-26.7917,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:42:0,42:0:0:42:1470:-132.59,-12.6433,0	1/1:60:0,60:0:0:60:2125:-191.517,-18.0618,0	1/1:50:0,50:0:0:50:1776:-160.117,-15.0515,0	1/1:101:0,101:0:0:101:3572:-321.69,-30.404,0	1/1:80:0,80:0:0:80:2825:-254.489,-24.0824,0	0/1:31:18,13:18:648:13:464:-32.7656,0,-49.32	0/1:20:13,7:13:464:7:248:-16.6436,0,-36.0769	1/1:43:1,42:1:36:42:1485:-130.322,-9.34602,0	1/1:25:0,25:0:0:25:880:-79.5177,-7.52575,0	0/1:45:25,20:25:892:20:712:-50.8603,0,-67.0533	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:42:26,16:26:912:16:572:-39.1702,0,-69.7498	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:83:45,38:45:1586:38:1359:-97.6252,0,-118.043	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:36:23,13:23:802:13:464:-31.2604,0,-61.6603	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:32:18,14:18:627:14:500:-35.7032,0,-47.1214	1/1:22:0,22:0:0:22:766:-69.2561,-6.62266,0	0/1:42:25,17:25:876:17:612:-42.7139,0,-66.511	1/1:38:0,38:0:0:38:1343:-121.169,-11.4391,0	0/1:87:44,43:44:1546:43:1514:-110.362,0,-113.241	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	1/1:91:0,91:0:0:91:3225:-290.473,-27.3937,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:26:0,26:0:0:26:912:-82.3931,-7.82678,0	1/1:23:1,22:1:36:22:792:-68.0074,-3.32542,0	1/1:66:1,65:1:36:65:2336:-206.901,-16.2697,0	0/1:41:18,23:18:648:23:824:-62.1411,0,-46.3097	1/1:42:0,42:0:0:42:1461:-131.781,-12.6433,0	0/1:48:25,23:25:881:23:824:-60.0339,0,-65.1518	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:38:19,19:19:655:19:684:-50.4512,0,-47.832	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:55:0,55:0:0:55:1938:-174.696,-16.5567,0	0/1:73:42,31:42:1495:31:1100:-77.3296,0,-112.869	1/1:75:0,75:0:0:75:2665:-240.093,-22.5773,0	1/1:83:0,83:0:0:83:2908:-261.94,-24.9855,0	0/1:169:92,77:92:3240:77:2739:-195.874,0,-240.949	1/1:49:0,49:0:0:49:1720:-155.047,-14.7505,0	0/1:80:47,33:47:1620:33:1172:-81.7051,0,-122	1/1:93:0,93:0:0:93:3319:-298.892,-27.9958,0	1/1:86:0,86:0:0:86:3006:-270.771,-25.8886,0	0/1:142:78,63:78:2728:63:2195:-155.007,0,-202.957	0/1:103:75,28:75:2628:28:995:-58.8579,0,-205.758	1/1:25:1,24:1:36:24:864:-74.4843,-3.92748,0	1/1:155:0,155:0:0:155:5434:-489.192,-46.6597,0
chr11	8299129	.	CTGAG	CTGAA,TTGAA	249925	PASS	AB=0.551264,0.440849;ABP=115.887,153.29;AC=148,40;AF=0.787234,0.212766;AN=188;AO=9427,2192;CIGAR=4M1X,1X3M1X;DP=11704;DPB=11704;DPRA=0,1.33633;EPP=20473.5,4762.88;EPPR=7.35324;GTI=1;LEN=1,5;MEANALT=2.28723,2.9375;MQM=59.451,58.8859;MQMR=60;NS=94;NUMALT=2;ODDS=0.918559;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=336937,75369;QR=72;RO=2;RPL=0,0;RPP=20473.5,4762.88;RPPR=7.35324;RPR=9427,2192;RUN=1,1;SAF=9427,2192;SAP=20473.5,4762.88;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45,0:0:0:45,0:1613,0:-144.551,-13.5464,0,-144.551,-13.5464,-144.551	1/2:204:0,126,77:0:0:126,77:4492,2675:-581.59,-217.335,-179.405,-364.294,0,-341.115	1/1:109:0,109,0:0:0:109,0:3882,0:-349.519,-32.8123,0,-349.519,-32.8123,-349.519	1/2:267:0,162,104:0:0:162,104:5801,3667:-769.866,-298.547,-249.78,-471.314,0,-440.007	1/1:89:0,89,0:0:0:89,0:3186,0:-286.842,-26.7917,0,-286.842,-26.7917,-286.842	1/1:126:0,125,0:0:0:125,0:4451,0:-399.679,-37.6288,0,-399.679,-37.6288,-399.679	1/1:195:0,195,0:0:0:195,0:6999,0:-629.722,-58.7009,0,-629.722,-58.7009,-629.722	1/1:313:0,310,1:0:0:310,1:11015,36:-990.791,-93.3193,0,-987.854,-90.3719,-987.553	1/2:108:0,63,44:0:0:63,44:2264,1535:-309.188,-124.635,-105.67,-184.546,0,-171.301	1/1:179:0,177,0:0:0:177,0:6304,0:-565.356,-53.2823,0,-565.356,-53.2823,-565.356	1/1:39:0,39,0:0:0:39,0:1404,0:-126.659,-11.7402,0,-126.659,-11.7402,-126.659	1/2:60:0,33,26:0:0:33,26:1175,874:-166.69,-70.9142,-60.9802,-95.9173,0,-88.0905	1/2:50:0,30,20:0:0:30,20:1065,646:-139.114,-52.3595,-43.3286,-87.0903,0,-81.0697	1/1:48:0,47,0:0:0:47,0:1680,0:-151.12,-14.1484,0,-151.12,-14.1484,-151.12	1/2:48:0,28,19:0:0:28,19:1004,640:-133.8,-51.9016,-43.4728,-81.9479,0,-76.2284	1/1:43:0,43,0:0:0:43,0:1542,0:-138.75,-12.9443,0,-138.75,-12.9443,-138.75	1/1:45:0,45,0:0:0:45,0:1608,0:-145.005,-13.5464,0,-145.005,-13.5464,-145.005	1/2:49:0,21,28:0:0:21,28:722,927:-133.89,-75.2552,-68.9336,-58.9734,0,-50.5445	1/2:32:0,17,15:0:0:17,15:601,497:-89.4844,-40.5304,-35.4129,-49.2955,0,-44.7801	1/2:197:0,120,76:0:0:120,76:4290,2631:-562.757,-213.898,-177.775,-348.972,0,-326.094	1/1:196:0,194,0:0:0:194,0:6930,0:-623.391,-58.3998,0,-623.391,-58.3998,-623.391	1/2:77:0,36,41:0:0:36,41:1277,1417:-219.453,-115.465,-104.628,-104.338,0,-91.9957	1/2:178:0,115,62:0:0:115,62:4057,2155:-505.427,-175.126,-140.508,-330.34,0,-311.676	1/1:190:0,189,0:0:0:189,0:6756,0:-607.401,-56.8947,0,-607.401,-56.8947,-607.401	1/1:122:0,121,0:0:0:121,0:4329,0:-389.465,-36.4246,0,-389.465,-36.4246,-389.465	1/2:448:0,232,213:0:0:232,213:8306,7286:-1266.34,-590.646,-520.807,-675.737,0,-611.617	1/1:242:0,240,0:0:0:240,0:8574,0:-771.308,-72.2472,0,-771.308,-72.2472,-771.308	1/1:21:0,21,0:0:0:21,0:749,0:-67.7166,-6.32163,0,-67.7166,-6.32163,-67.7166	1/1:288:0,285,1:0:0:285,1:10180,35:-915.554,-85.7936,0,-912.751,-82.9859,-912.45	1/2:138:0,91,47:0:0:91,47:3261,1633:-398.861,-132.993,-105.599,-266.219,0,-252.07	1/1:283:0,280,0:0:0:280,0:10040,0:-903.129,-84.2884,0,-903.129,-84.2884,-903.129	1/2:14:0,9,5:0:0:9,5:324,162:-39.8461,-13.3945,-10.6852,-26.7883,0,-25.2832	1/1:26:0,25,0:0:0:25,0:900,0:-80.9612,-7.52575,0,-80.9612,-7.52575,-80.9612	1/1:7:0,7,0:0:0:7,0:237,0:-21.6508,-2.10721,0,-21.6508,-2.10721,-21.6508	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:17:0,17,0:0:0:17,0:612,0:-55.3947,-5.11751,0,-55.3947,-5.11751,-55.3947	1/2:194:0,113,78:0:0:113,78:4037,2651:-543.205,-214.729,-180.712,-328.543,0,-305.063	1/2:206:0,121,83:0:0:121,83:4334,2878:-587.241,-233.806,-197.381,-353.432,0,-328.447	1/1:59:0,59,0:0:0:59,0:2120,0:-190.78,-17.7608,0,-190.78,-17.7608,-190.78	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:202:0,201,0:0:0:201,0:7135,0:-641.744,-60.507,0,-641.744,-60.507,-641.744	1/1:28:0,28,0:0:0:28,0:993,0:-89.6683,-8.42884,0,-89.6683,-8.42884,-89.6683	1/1:251:0,249,0:0:0:249,0:8902,0:-800.034,-74.9565,0,-800.034,-74.9565,-800.034	1/1:102:0,102,0:0:0:102,0:3661,0:-329.429,-30.7051,0,-329.429,-30.7051,-329.429	1/1:50:0,50,0:0:0:50,0:1774,0:-159.93,-15.0515,0,-159.93,-15.0515,-159.93	1/2:168:0,99,67:0:0:99,67:3534,2364:-479.899,-192.457,-162.655,-287.436,0,-267.267	1/2:164:0,92,71:0:0:92,71:3293,2428:-464.968,-196.427,-168.732,-268.539,0,-247.166	1/1:381:0,378,1:0:0:378,1:13459,36:-1207.5,-113.789,0,-1204.56,-110.827,-1204.26	1/1:166:0,165,0:0:0:165,0:5897,0:-530.246,-49.67,0,-530.246,-49.67,-530.246	1/2:300:0,159,140:0:0:159,140:5720,4810:-855.522,-390.108,-342.244,-465.435,0,-423.29	1/1:194:0,193,1:0:0:193,1:6887,36:-619.473,-58.0988,0,-616.536,-54.8015,-616.235	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:128:0,126,2:0:0:126,2:4524,72:-406.877,-37.9298,0,-401.003,-31.6951,-400.401	1/1:70:0,70,0:0:0:70,0:2520,0:-227.05,-21.0721,0,-227.05,-21.0721,-227.05	1/2:31:0,14,17:0:0:14,17:504,602:-89.9168,-48.7886,-44.5741,-41.4837,0,-36.3662	1/2:167:0,61,104:0:0:61,104:2196,3635:-473.139,-295.504,-277.141,-177.672,0,-146.365	1/2:83: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chr11	8299146	.	G	A	187334	PASS	AB=0.549278;ABP=100.813;AC=148;AF=0.787234;AN=188;AO=8884;CIGAR=1X;DP=10991;DPB=10991;DPRA=0;EPP=18905.5;EPPR=4216.43;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.4878;MQMR=59.0271;NS=94;NUMALT=1;ODDS=3.96611;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=311341;QR=74545;RO=2105;RPL=45;RPP=18905.5;RPPR=4216.43;RPR=8839;RUN=1;SAF=8884;SAP=19294.4;SAR=0;SRF=2105;SRP=4573.96;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1481:-133.446,-12.9443,0	0/1:193:75,118:75:2658:118:4133:-312.942,0,-181.056	1/1:103:0,103:0:0:103:3608:-324.906,-31.0061,0	0/1:257:101,156:101:3568:156:5458:-413.324,0,-243.918	1/1:100:0,100:0:0:100:3484:-313.425,-30.103,0	1/1:124:0,124:0:0:124:4385:-393.603,-37.3277,0	1/1:183:0,183:0:0:183:6397:-575.446,-55.0885,0	1/1:289:1,287:1:36:287:10121:-906.799,-83.4033,0	0/1:105:44,61:44:1559:61:2109:-158.416,0,-108.548	1/1:165:0,164:0:0:164:5758:-517.235,-49.3689,0	1/1:32:0,32:0:0:32:1128:-101.828,-9.63296,0	0/1:55:24,31:24:833:31:1096:-82.3929,0,-58.6914	0/1:46:18,28:18:631:28:990:-75.5641,0,-43.2209	1/1:46:1,45:1:32:45:1555:-137.017,-10.6481,0	0/1:46:18,28:18:622:28:980:-74.6608,0,-42.4547	1/1:38:0,38:0:0:38:1308:-118.014,-11.4391,0	1/1:44:0,44:0:0:44:1539:-138.796,-13.2453,0	0/1:43:24,19:24:830:19:659:-46.688,0,-61.8741	0/1:31:14,17:14:480:17:595:-44.5327,0,-34.1919	0/1:192:78,114:78:2771:114:3996:-300.674,0,-191.05	1/1:179:0,179:0:0:179:6307:-567.668,-53.8844,0	0/1:76:42,34:42:1474:34:1156:-81.4058,0,-110.062	0/1:169:62,107:62:2204:107:3781:-289.605,0,-147.621	1/1:182:0,182:0:0:182:6392:-575.318,-54.7875,0	1/1:115:0,115:0:0:115:4002:-360.359,-34.6185,0	0/1:413:204,209:204:7260:209:7302:-532.291,0,-526.965	1/1:228:0,228:0:0:228:8043:-723.881,-68.6348,0	1/1:20:0,20:0:0:20:696:-62.9218,-6.0206,0	1/1:268:0,268:0:0:268:9416:-847.075,-80.676,0	0/1:133:46,87:46:1639:87:3021:-231.853,0,-107.6	1/1:271:0,271:0:0:271:9503:-855.173,-81.5791,0	0/1:13:5,8:5:176:8:280:-21.6226,0,-12.2716	1/1:25:0,25:0:0:25:872:-78.7964,-7.52575,0	1/1:6:0,6:0:0:6:204:-18.69,-1.80618,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:14:0,14:0:0:14:488:-44.2462,-4.21442,0	0/1:180:73,107:73:2582:107:3750:-282.424,0,-178.077	0/1:194:80,114:80:2855:114:3993:-301.135,0,-198.644	1/1:56:0,56:0:0:56:1918:-172.86,-16.8577,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:182:0,182:0:0:182:6378:-574.073,-54.7875,0	1/1:28:0,28:0:0:28:958:-86.5182,-8.42884,0	1/1:241:0,241:0:0:241:8474:-761.929,-72.5482,0	1/1:94:0,94:0:0:94:3267:-294.005,-28.2968,0	1/1:49:1,48:1:36:48:1695:-149.222,-11.1522,0	0/1:160:65,95:65:2302:95:3322:-250.8,0,-159.238	0/1:153:67,86:67:2388:86:3032:-227.053,0,-168.914	1/1:351:1,350:1:36:350:12251:-1095.14,-102.063,0	1/1:149:0,149:0:0:149:5219:-469.652,-44.8535,0	0/1:273:131,142:131:4644:142:4938:-362.027,0,-335.369	1/1:183:1,182:1:36:182:6415:-573.785,-51.4902,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:118:2,116:2:72:116:4110:-363.195,-28.6848,0	1/1:67:0,67:0:0:67:2360:-212.659,-20.169,0	0/1:30:16,14:16:572:14:496:-35.9434,0,-42.2655	0/1:154:101,53:101:3565:53:1853:-120.685,0,-274.305	0/1:80:27,53:27:963:53:1880:-145.394,0,-62.8946	0/1:13:7,6:7:243:6:208:-15.1457,0,-18.2937	0/1:30:16,14:16:557:14:488:-35.2195,0,-41.42	1/1:162:0,162:0:0:162:5721:-514.984,-48.7669,0	0/1:89:46,43:46:1623:43:1520:-110.276,0,-117.275	0/1:19:8,11:8:280:11:370:-27.8917,0,-19.8035	0/1:158:74,84:74:2627:84:2936:-216.905,0,-189.113	1/1:319:2,317:2:72:317:11077:-989.146,-89.1918,0	0/1:60:29,31:29:1044:31:1100:-81.2439,0,-76.2099	1/1:111:0,111:0:0:111:3885:-348.816,-33.4143,0	0/1:361:173,188:173:6141:188:6578:-483.176,0,-443.762	1/1:81:1,80:1:36:80:2792:-247.809,-20.7852,0	0/1:11:4,7:4:136:7:240:-18.6233,0,-9.25992	1/1:81:0,81:0:0:81:2828:-254.381,-24.3834,0	1/1:75:0,75:0:0:75:2620:-236.047,-22.5773,0	0/1:15:6,9:6:216:9:320:-24.6245,0,-15.0151	1/1:142:3,139:3:108:139:4893:-430.203,-32.6711,0	1/1:110:0,110:0:0:110:3851:-346.743,-33.1133,0	1/1:212:0,212:0:0:212:7461:-671.288,-63.8184,0	0/1:187:92,95:92:3274:95:3344:-244.657,0,-237.898	1/1:132:0,132:0:0:132:4618:-415.668,-39.736,0	0/1:153:74,79:74:2608:79:2777:-204.064,0,-188.818	0/1:19:8,11:8:279:11:392:-29.9005,0,-19.7223	0/1:131:61,70:61:2168:70:2450:-179.888,0,-155.804	1/1:81:2,79:2:63:79:2759:-242.446,-18.4003,0	1/1:370:0,370:0:0:370:12951:-1165.15,-111.381,0	0/1:82:36,46:36:1253:46:1622:-120.393,0,-87.7537	1/1:51:0,51:0:0:51:1787:-161.107,-15.3525,0	1/1:59:0,59:0:0:59:2045:-184.248,-17.7608,0	0/1:109:53,56:53:1880:56:1969:-144.666,0,-135.283	1/1:48:0,48:0:0:48:1677:-151.162,-14.4494,0	0/1:57:23,34:23:811:34:1181:-89.418,0,-56.1513	1/1:52:0,52:0:0:52:1829:-164.824,-15.6536,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:74:29,45:29:1027:45:1568:-119.043,0,-70.466	0/1:73:36,37:36:1275:37:1288:-94.2456,0,-92.5478	1/1:148:0,148:0:0:148:5209:-467.518,-44.5524,0	1/1:93:0,93:0:0:93:3231:-290.563,-27.9958,0
chr11	8592101	.	T	C	14302	PASS	AB=0.439903;ABP=67.4771;AC=38;AF=0.204301;AN=186;AO=914;CIGAR=1X;DP=4821;DPB=4821;DPRA=1.20919;EPP=1987.74;EPPR=8482.61;GTI=3;LEN=1;MEANALT=1.04878;MQM=54.3676;MQMR=59.4182;NS=93;NUMALT=1;ODDS=0.831711;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32733;QR=140003;RO=3905;RPL=0;RPP=1987.74;RPPR=8482.61;RPR=914;RUN=1;SAF=914;SAP=1987.74;SAR=0;SRF=3905;SRP=8482.61;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:30:21,9:21:748:9:324:-20.4008,0,-58.6144	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.089	0/1:114:76,38:76:2732:38:1364:-88.5994,0,-211.46	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4678	0/0:38:37,1:37:1332:1:36:0,-7.84991,-116.585	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.76	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.35	0/1:51:35,16:35:1256:16:576:-36.6857,0,-97.9846	0/0:75:75,0:75:2672:0:0:0,-22.5772,-240.4	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.765	0/1:81:44,37:44:1584:37:1323:-94.3233,0,-118.444	0/1:51:26,25:26:936:25:900:-65.4781,0,-69.1906	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.282	0/1:53:26,27:26:936:27:972:-71.6956,0,-68.6025	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.457	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6299	0/1:20:10,10:10:356:10:356:-26.2833,0,-25.2008	0/1:13:7,6:7:252:6:216:-15.8274,0,-19.1156	0/1:95:61,34:61:2192:34:1210:-80.253,0,-168.925	0/0:152:152,0:152:5448:0:0:0,-45.7566,-489.666	0/1:34:11,23:11:396:23:828:-64.5786,0,-25.7468	0/1:43:26,17:26:936:17:608:-41.9007,0,-71.6081	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.276	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8313	0/1:149:92,56:92:3304:56:2012:-136.156,0,-252.438	0/0:129:129,0:129:4624:0:0:0,-38.8329,-416.155	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.701	0/0:131:131,0:131:4704:0:0:0,-39.4349,-422.126	0/1:59:28,31:28:1008:31:1104:-81.7128,0,-73.1085	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.251	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6587	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8951	0/1:148:82,66:82:2948:66:2360:-167.675,0,-220.868	0/1:52:34,18:34:1220:18:648:-42.1391,0,-94.4486	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.116	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:108:108,0:108:3868:0:0:0,-32.5112,-347.518	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5012	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.146	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.509	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.273	0/1:50:29,21:29:1040:21:756:-53.1529,0,-78.8629	0/1:22:10,12:10:360:12:432:-32.4721,0,-26.1134	0/0:90:89,1:89:3180:1:36:0,-23.497,-282.786	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.617	0/1:54:33,21:33:1184:21:751:-51.5577,0,-90.6057	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.3022	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.759	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.182	0/1:7:4,3:4:144:3:108:-7.75444,0,-11.2064	0/1:58:31,27:31:1104:27:972:-69.8421,0,-82.2063	0/1:11:9,2:9:324:2:72:-3.52046,0,-25.7621	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7475	0/1:57:27,30:27:968:30:1076:-79.7572,0,-70.2787	1/1:4:0,4:0:0:4:133:-12.2763,-1.20412,0	0/1:133:71,62:71:2528:62:2208:-158.721,0,-187.358	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.001	0/1:31:15,16:15:536:16:572:-42.4103,0,-39.1414	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.005	0/1:63:35,28:35:1252:28:1000:-71.1541,0,-94.0132	0/0:59:58,1:58:2084:1:32:0,-14.6021,-184.52	0/1:20:10,10:10:360:10:360:-26.6773,0,-26.7191	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.359	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.963	0/1:14:10,4:10:356:4:144:-9.00359,0,-28.1668	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.372	0/0:68:68,0:68:2432:0:0:0,-20.47,-218.725	0/0:82:82,0:82:2928:0:0:0,-24.6845,-262.955	0/1:99:59,40:59:2124:40:1428:-98.648,0,-161.624	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:51:17,34:17:612:34:1216:-92.3818,0,-40.0158	0/1:14:12,2:12:432:2:72:-2.60511,0,-35.0068	0/1:28:14,13:14:504:13:464:-33.4238,0,-37.2027	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.481	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.554	0/1:61:33,28:33:1188:28:1008:-72.3824,0,-88.6037	0/0:51:51,0:51:1827:0:0:0,-15.3525,-164.706	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.45	0/1:127:76,51:76:2732:51:1836:-126.951,0,-207.539	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.096	0/1:60:29,31:29:1044:31:1112:-82.0677,0,-76.2121	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.261	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3128	0/1:45:27,18:27:972:18:640:-44.1769,0,-74.2185	0/1:57:19,38:19:684:38:1360:-105.276,0,-44.7293	0/0:96:96,0:96:3428:0:0:0,-28.8989,-308.576	0/0:107:104,3:104:3720:3:108:0,-22.1423,-324.911
chr11	9238997	.	A	G	14746.8	PASS	AB=0.503876;ABP=3.29646;AC=39;AF=0.209677;AN=186;AO=1142;CIGAR=1X;DP=4837;DPB=4837;DPRA=1.32348;EPP=660.43;EPPR=7729.66;GTI=2;LEN=1;MEANALT=1.02439;MQM=26.979;MQMR=58.4449;NS=93;NUMALT=1;ODDS=0.178031;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40895;QR=132439;RO=3693;RPL=865;RPP=660.43;RPPR=7729.66;RPR=277;RUN=1;SAF=0;SAP=2482.83;SAR=1142;SRF=0;SRP=8022.26;SRR=3693;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8132	0/1:57:21,36:21:756:36:1292:-84.1993,0,-51.2	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6439	0/1:20:14,6:14:504:6:216:-7.37501,0,-39.5656	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0569	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3588	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.04	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.557	0/1:46:20,26:20:720:26:936:-59.3585,0,-51.2382	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.902	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.416	0/1:57:51,6:51:1836:6:216:-0.0212988,0,-147.802	0/1:76:42,34:42:1499:34:1216:-72.1869,0,-112.285	0/0:149:149,0:149:5337:0:0:0,-44.8535,-480.135	0/0:27:24,3:24:864:3:108:0,-1.22047,-71.1656	0/0:62:61,1:61:2188:1:36:0,-15.0851,-193.555	0/0:87:87,0:87:3132:0:0:0,-26.1896,-282.07	0/1:48:30,18:30:1076:18:648:-36.115,0,-82.5449	0/1:31:19,12:19:684:12:432:-24.7157,0,-52.5507	0/1:85:26,59:26:936:59:2116:-106.235,0,-58.6902	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.879	0/1:50:10,40:10:360:40:1428:-74.1277,0,-17.6887	0/1:43:29,14:29:1040:14:504:-18.9812,0,-80.9472	0/0:52:52,0:52:1853:0:0:0,-15.6536,-166.905	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6648	0/1:86:59,27:59:2120:27:968:-33.749,0,-165.035	0/0:70:70,0:70:2512:0:0:0,-21.0721,-225.344	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.587	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.53	0/1:75:39,36:39:1400:36:1277:-57.6517,0,-103.706	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.153	0/1:4:2,2:2:72:2:68:-3.4396,0,-5.63176	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5022	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83588	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1832	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0739	0/1:179:94,85:94:3380:85:3035:-134.967,0,-250.493	0/1:61:49,12:49:1752:12:432:-8.52644,0,-138.939	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.783	.:.:.:.:.:.:.:.	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.019	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.692	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.537	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.288	0/0:58:58,0:58:2080:0:0:0,-17.4597,-186.97	0/1:60:21,39:21:752:39:1400:-68.732,0,-49.8804	0/1:57:18,39:18:644:39:1404:-92.7754,0,-41.1237	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.124	0/0:42:42,0:42:1494:0:0:0,-12.6433,-134.736	0/1:81:20,61:20:720:61:2168:-110.546,0,-40.7204	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.378	1/1:19:1,18:1:36:18:648:-37.372,-2.12174,0	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.872	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9065	0/1:14:4,10:4:144:10:360:-24.2107,0,-9.07875	0/1:48:28,20:28:1000:20:716:-30.7545,0,-75.7493	0/1:30:16,14:16:576:14:492:-22.1745,0,-43.1095	0/1:14:3,11:3:108:11:396:-20.4546,0,-5.8595	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59783	0/0:27:27,0:27:964:0:0:0,-8.12781,-86.7668	0/1:139:69,70:69:2480:70:2516:-115.796,0,-181.475	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59783	0/1:92:20,72:20:705:72:2571:-133.188,0,-36.0704	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.735	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1685	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4066	0/1:56:19,37:19:676:37:1328:-65.1524,0,-44.2746	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.167	0/1:34:21,13:21:756:13:449:-19.0084,0,-58.0887	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.8768	0/0:113:113,0:113:4060:0:0:0,-34.0164,-365.246	0/1:12:3,9:3:108:9:324:-17.2146,0,-6.46038	0/0:43:42,0:42:1508:0:0:0,-12.6433,-135.79	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.4649	0/0:69:68,1:68:2440:1:32:0,-17.5796,-216.624	0/1:82:18,64:18:644:64:2304:-118.248,0,-33.4682	0/0:36:36,0:36:1272:0:0:0,-10.8371,-114.765	0/1:57:24,33:24:864:33:1184:-75.566,0,-60.8228	1/1:13:1,12:1:36:12:428:-30.2887,-0.315561,0	0/1:54:15,39:15:540:39:1395:-71.594,0,-32.6749	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.555	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.176	0/1:113:46,67:46:1652:67:2408:-115.023,0,-114.871	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.157	0/0:95:95,0:95:3420:0:0:0,-28.5978,-306.218	0/1:106:91,15:91:3272:15:540:-2.29419,0,-262.729	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.558	0/1:83:53,30:53:1908:30:1076:-59.5048,0,-146.969	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.28	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.755	0/1:108:69,38:69:2476:38:1364:-54.0877,0,-190.548	0/1:35:24,11:24:860:11:392:-14.0915,0,-67.1764	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0729	0/0:87:85,2:85:3044:2:72:0,-21.5025,-269.309
chr11	9239008	.	CC	CT,TT	96954.7	PASS	AB=0.498206,0.5;ABP=3.07262,3.0103;AC=147,39;AF=0.790323,0.209677;AN=186;AO=3774,1150;CIGAR=1M1X,2X;DP=4935;DPB=4935;DPRA=0,1.28664;EPP=8198.15,2500.2;EPPR=13.8677;GTI=5;LEN=1,2;MEANALT=1.47312,2.07692;MQM=58.3922,26.9148;MQMR=60;NS=93;NUMALT=2;ODDS=0.371194;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=135211,41130;QR=180;RO=5;RPL=3774,1150;RPP=8198.15,2500.2;RPPR=13.8677;RPR=0,0;RUN=1,1;SAF=0,0;SAP=8198.15,2500.2;SAR=3774,1150;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23,0:0:0:23,0:813,0:-73.4799,-6.92369,0,-73.4799,-6.92369,-73.4799	1/2:57:0,21,36:0:0:21,36:756,1296:-152.376,-90.6811,-84.3595,-62.0371,0,-51.2	1/1:18:0,18,0:0:0:18,0:648,0:-58.6439,-5.41854,0,-58.6439,-5.41854,-58.6439	1/2:21:0,15,6:0:0:15,6:540,216:-55.6217,-11.5894,-7.07398,-44.3088,0,-42.5026	1/1:13:0,13,0:0:0:13,0:468,0:-42.4188,-3.91339,0,-42.4188,-3.91339,-42.4188	1/1:21:0,21,0:0:0:21,0:752,0:-67.998,-6.32163,0,-67.998,-6.32163,-67.998	1/1:39:0,39,0:0:0:39,0:1400,0:-126.278,-11.7402,0,-126.278,-11.7402,-126.278	1/1:66:0,66,0:0:0:66,0:2357,0:-212.115,-19.868,0,-212.115,-19.868,-212.115	1/2:47:0,21,26:0:0:21,26:756,924:-126.504,-64.8389,-58.5172,-62.0021,0,-54.1753	1/1:28:0,28,0:0:0:28,0:1000,0:-90.2416,-8.42884,0,-90.2416,-8.42884,-90.2416	1/1:93:0,93,0:0:0:93,0:3339,0:-300.643,-27.9958,0,-300.643,-27.9958,-300.643	1/2:57:0,51,6:0:0:51,6:1832,216:-164.305,-15.3738,-0.0212979,-149.248,0,-147.442	1/2:76:0,42,34:0:0:42,34:1504,1216:-207.39,-84.7507,-72.1075,-122.97,0,-112.735	1/1:155:0,155,0:0:0:155,0:5558,0:-500.012,-46.6597,0,-500.012,-46.6597,-500.012	1/1:27:0,24,3:0:0:24,3:860,97:-77.4613,-7.22472,0,-71.9576,-1.46991,-71.0545	1/1:63:0,63,0:0:0:63,0:2248,0:-202.537,-18.9649,0,-202.537,-18.9649,-202.537	1/1:91:2,89,0:2:72:89,0:3181,0:-279.639,-20.557,0,-280.241,-26.7917,-286.116	1/2:49:0,30,19:0:0:30,19:1060,684:-133.939,-47.6563,-38.6254,-86.6098,0,-80.8902	1/2:32:0,19,13:0:0:19,13:684,468:-88.777,-32.9455,-27.226,-56.1631,0,-52.2497	1/2:87:0,28,59:0:0:28,59:1008,2106:-195.874,-113.871,-105.443,-82.3251,0,-64.5643	1/1:62:0,62,0:0:0:62,0:2213,0:-199.247,-18.6639,0,-199.247,-18.6639,-199.247	1/2:50:0,10,40:0:0:10,40:360,1409:-105.941,-76.5476,-73.5373,-29.7299,0,-17.6887	1/2:44:0,29,15:0:0:29,15:1014,540:-112.144,-29.6299,-20.9,-82.7987,0,-78.2832	1/1:53:0,53,0:0:0:53,0:1908,0:-171.853,-15.9546,0,-171.853,-15.9546,-171.853	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9029,-8.72987,0,-93.9029,-8.72987,-93.9029	1/2:88:0,61,27:0:0:61,27:2192,966:-230.259,-51.5016,-33.1387,-179.037,0,-170.909	1/1:69:0,69,0:0:0:69,0:2480,0:-222.465,-20.7711,0,-222.465,-20.7711,-222.465	1/1:37:0,37,0:0:0:37,0:1332,0:-119.825,-11.1381,0,-119.825,-11.1381,-119.825	1/1:81:0,81,0:0:0:81,0:2889,0:-260.053,-24.3834,0,-260.053,-24.3834,-260.053	1/2:75:0,39,36:0:0:39,36:1404,1288:-184.422,-69.8206,-58.0805,-114.903,0,-104.066	1/1:61:0,61,0:0:0:61,0:2192,0:-197.499,-18.3628,0,-197.499,-18.3628,-197.499	1/2:5:0,2,3:0:0:2,3:72,85:-11.3215,-5.39352,-4.79146,-6.23382,0,-5.33073	1/1:9:0,9,0:0:0:9,0:324,0:-29.5022,-2.70927,0,-29.5022,-2.70927,-29.5022	1/1:2:0,2,0:0:0:2,0:72,0:-6.83588,-0.60206,0,-6.83588,-0.60206,-6.83588	1/1:5:0,5,0:0:0:5,0:180,0:-16.55,-1.50515,0,-16.55,-1.50515,-16.55	1/1:3:0,3,0:0:0:3,0:108,0:-10.0739,-0.90309,0,-10.0739,-0.90309,-10.0739	1/2:184:0,99,85:0:0:99,85:3549,3050:-453.101,-163.625,-133.823,-289.775,0,-264.187	1/2:63:0,51,12:0:0:51,12:1836,432:-172.513,-23.2769,-7.92438,-149.504,0,-145.892	1/1:84:0,84,0:0:0:84,0:3024,0:-272.259,-25.2865,0,-272.259,-25.2865,-272.259	.:.:.:.:.:.:.:.	1/1:31:0,31,0:0:0:31,0:1116,0:-100.74,-9.33193,0,-100.74,-9.33193,-100.74	1/1:34:0,33,0:0:0:33,0:1183,0:-106.367,-9.93399,0,-106.367,-9.93399,-106.367	1/1:47:0,47,0:0:0:47,0:1662,0:-149.732,-14.1484,0,-149.732,-14.1484,-149.732	1/1:75:0,75,0:0:0:75,0:2686,0:-241.862,-22.5773,0,-241.862,-22.5773,-241.862	1/1:61:0,61,0:0:0:61,0:2181,0:-196.074,-18.3628,0,-196.074,-18.3628,-196.074	1/2:62:0,22,40:0:0:22,40:792,1416:-141.12,-76.5206,-69.8979,-64.9183,0,-52.8771	1/2:57:0,18,38:0:0:18,38:644,1364:-147.343,-94.8215,-89.4029,-52.5067,0,-41.0676	1/1:52:0,52,0:0:0:52,0:1853,0:-167.011,-15.6536,0,-167.011,-15.6536,-167.011	1/1:42:1,41,0:1:36:41,0:1476,0:-129.52,-9.04499,0,-129.821,-12.3422,-132.759	1/2:81:0,20,61:0:0:20,61:705,2184:-174.47,-117.068,-111.048,-57.7277,0,-39.3648	1/1:53:0,53,0:0:0:53,0:1874,0:-168.048,-15.9546,0,-168.048,-15.9546,-168.048	2/2:19:0,1,18:0:0:1,18:36,631:-39.9356,-36.9927,-36.6916,-5.41854,-2.12174,0	1/1:41:0,41,0:0:0:41,0:1464,0:-132.037,-12.3422,0,-132.037,-12.3422,-132.037	1/1:18:0,18,0:0:0:18,0:640,0:-57.8099,-5.41854,0,-57.8099,-5.41854,-57.8099	1/2:15:0,5,10:0:0:5,10:180,352:-39.6958,-25.0119,-23.5067,-15.0262,0,-12.0159	1/2:49:0,29,20:0:0:29,20:1025,720:-122.647,-39.2247,-30.4949,-83.714,0,-77.6934	1/2:30:0,16,14:0:0:16,14:572,502:-73.7632,-27.0987,-22.2822,-46.9626,0,-42.7482	1/2:14:0,3,11:0:0:3,11:108,394:-30.1765,-21.3411,-20.438,-9.17083,0,-5.8595	1/1:1:0,1,0:0:0:1,0:36,0:-3.59783,-0.30103,0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chr11	9403671	.	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chr11	9623946	.	G	A	160315	PASS	AB=0.526164;ABP=27.7816;AC=146;AF=0.784946;AN=186;AO=7475;CIGAR=1X;DP=9469;DPB=9469;DPRA=102.913;EPP=16130.7;EPPR=4302.54;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.9928;MQMR=59.9975;NS=93;NUMALT=1;ODDS=3.34816;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=267102;QR=69766;RO=1988;RPL=13;RPP=16122;RPPR=4302.54;RPR=7462;RUN=1;SAF=1;SAP=16226.1;SAR=7474;SRF=0;SRP=4319.9;SRR=1988;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57:0:0:57:2052:-184.951,-17.1587,0	0/1:139:56,83:56:1970:83:2973:-225.959,0,-135.731	1/1:109:0,109:0:0:109:3907:-351.822,-32.8123,0	0/1:179:85,94:85:3002:94:3356:-248.373,0,-216.529	1/1:90:1,89:1:36:89:3183:-283.095,-23.4944,0	1/1:78:1,77:1:32:77:2753:-244.811,-20.281,0	1/1:141:3,138:3:104:138:4909:-432.258,-32.7424,0	1/1:217:1,216:1:36:216:7694:-688.896,-61.7252,0	0/1:77:33,44:33:1158:44:1572:-118.592,0,-81.3457	1/1:99:0,99:0:0:99:3524:-317.369,-29.802,0	1/1:97:0,97:0:0:97:3449:-310.623,-29.1999,0	0/1:68:40,28:40:1432:28:953:-65.6042,0,-108.708	0/1:83:40,43:40:1415:43:1548:-114.628,0,-102.661	1/1:136:0,136:0:0:136:4868:-438.271,-40.9401,0	0/1:126:67,58:67:2278:58:2072:-148.762,0,-167.289	1/1:79:1,78:1:36:78:2791:-247.832,-20.1831,0	1/1:110:0,110:0:0:110:3943:-355.061,-33.1133,0	0/1:75:33,42:33:1172:42:1512:-113.797,0,-83.2102	0/1:39:16,23:16:555:23:820:-62.3823,0,-38.5359	0/1:142:71,71:71:2483:71:2548:-186.824,0,-180.979	1/1:92:0,92:0:0:92:3287:-296.049,-27.6948,0	0/1:81:56,25:56:1961:25:892:-56.2163,0,-152.38	0/1:35:12,23:12:424:23:824:-63.9473,0,-27.9604	1/1:104:1,103:1:32:103:3685:-328.652,-28.1078,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:273:138,134:138:4867:134:4791:-349.106,0,-355.948	1/1:190:0,190:0:0:190:6809:-612.878,-57.1957,0	1/1:48:0,48:0:0:48:1713:-154.455,-14.4494,0	1/1:190:0,190:0:0:190:6796:-611.711,-57.1957,0	0/1:166:78,88:78:2740:88:3137:-232.583,0,-196.872	1/1:118:0,118:0:0:118:4227:-380.609,-35.5215,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:191:95,96:95:3322:96:3444:-252.675,0,-241.701	0/1:182:78,104:78:2763:104:3720:-280.214,0,-194.125	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:160:0,160:0:0:160:5742:-516.893,-48.1648,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:135:0,135:0:0:135:4807:-432.785,-40.6391,0	1/1:72:0,72:0:0:72:2583:-232.719,-21.6742,0	1/1:82:0,82:0:0:82:2904:-261.595,-24.6845,0	0/1:60:25,35:25:883:35:1243:-94.1121,0,-61.7257	0/1:107:42,65:42:1462:65:2323:-177.119,0,-99.6627	1/1:195:3,192:3:104:192:6849:-606.775,-48.998,0	1/1:72:0,72:0:0:72:2568:-231.368,-21.6742,0	0/1:162:78,83:78:2774:83:2958:-217.627,0,-201.075	1/1:125:1,124:1:36:124:4438:-395.992,-34.0305,0	0/1:13:3,10:3:104:10:360:-28.8309,0,-5.78942	1/1:111:1,110:1:36:110:3960:-352.991,-29.8161,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:30:14,16:14:500:16:568:-42.4204,0,-36.3053	0/1:108:51,56:51:1764:56:1964:-144.453,0,-126.468	0/1:27:9,18:9:320:18:644:-50.1628,0,-21.0145	.:.:.:.:.:.:.:.	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	1/1:52:0,52:0:0:52:1843:-166.15,-15.6536,0	0/1:149:72,77:72:2505:77:2754:-203.247,0,-180.845	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:171:89,82:89:3122:82:2904:-210.12,0,-229.734	1/1:252:1,251:1:36:251:8979:-804.49,-72.2613,0	0/1:96:35,61:35:1220:61:2184:-167.927,0,-81.2018	1/1:89:0,89:0:0:89:3161:-284.715,-26.7917,0	0/1:127:41,86:41:1434:86:3054:-236.859,0,-91.1235	1/1:99:0,99:0:0:99:3544:-319.168,-29.802,0	0/1:39:18,21:18:614:21:748:-55.9051,0,-43.8368	1/1:77:0,77:0:0:77:2749:-247.65,-23.1793,0	1/1:120:1,119:1:27:119:4256:-380.517,-33.4238,0	0/1:36:17,19:17:600:19:680:-50.6921,0,-43.4921	1/1:108:0,108:0:0:108:3855:-347.145,-32.5112,0	1/1:117:0,117:0:0:117:4212:-379.258,-35.2205,0	1/1:173:0,173:0:0:173:6174:-555.759,-52.0782,0	0/1:273:140,133:140:4933:133:4751:-345.567,0,-361.944	1/1:172:0,172:0:0:172:6162:-554.677,-51.7772,0	0/1:195:86,109:86:3025:109:3899:-292.403,0,-213.782	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:174:91,83:91:3192:83:2964:-214.614,0,-235.127	1/1:131:0,131:0:0:131:4667:-420.183,-39.4349,0	1/1:199:0,199:0:0:199:7117:-640.587,-59.905,0	0/1:126:60,66:60:2076:66:2372:-175.808,0,-149.174	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	1/1:96:1,95:1:36:95:3377:-300.545,-25.3006,0	0/1:149:67,81:67:2363:81:2886:-215.062,0,-168.014	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:82:34,48:34:1198:48:1726:-130.941,0,-83.4395	1/1:90:0,90:0:0:90:3223:-290.291,-27.0927,0	1/1:65:0,64:0:0:64:2270:-204.289,-19.2659,0	0/1:101:50,51:50:1745:51:1824:-134.037,0,-126.925	0/1:69:42,27:42:1479:27:953:-65.3122,0,-112.633	1/1:62:0,62:0:0:62:2221:-200.154,-18.6639,0	1/1:135:2,133:2:72:133:4763:-421.99,-33.8023,0
chr11	9623967	.	T	A	159097	PASS	AB=0.514789;ABP=11.1029;AC=146;AF=0.784946;AN=186;AO=7446;CIGAR=1X;DP=9529;DPB=9529;DPRA=103.565;EPP=16171.8;EPPR=4502.32;GTI=1;LEN=1;MEANALT=1.03261;MQM=59.995;MQMR=59.9995;NS=93;NUMALT=1;ODDS=2.485;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266531;QR=74546;RO=2080;RPL=7446;RPP=16171.8;RPPR=4502.32;RPR=0;RUN=1;SAF=0;SAP=16171.8;SAR=7446;SRF=0;SRP=4519.67;SRR=2080;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	0/1:140:58,82:58:2076:82:2929:-221.699,0,-144.966	1/1:110:0,110:0:0:110:3944:-355.151,-33.1133,0	0/1:182:87,95:87:3090:95:3395:-250.976,0,-223.538	1/1:92:1,91:1:36:91:3248:-288.944,-24.0965,0	1/1:79:0,79:0:0:79:2840:-255.838,-23.7814,0	1/1:137:3,134:3:108:134:4804:-422.354,-31.1659,0	1/1:219:1,218:1:36:218:7791:-697.619,-62.3273,0	0/1:79:36,43:36:1296:43:1544:-115.472,0,-93.1626	1/1:96:0,96:0:0:96:3421:-308.103,-28.8989,0	1/1:92:0,92:0:0:92:3275:-294.971,-27.6948,0	0/1:66:40,26:40:1440:26:910:-62.3461,0,-110.03	0/1:86:43,43:43:1544:43:1544:-113.364,0,-113.364	1/1:133:0,133:0:0:133:4776:-429.995,-40.037,0	0/1:127:68,59:68:2444:59:2124:-153.197,0,-181.984	1/1:79:1,78:1:36:78:2800:-248.641,-20.1831,0	1/1:109:0,109:0:0:109:3904:-351.553,-32.8123,0	0/1:75:33,42:33:1184:42:1508:-113.437,0,-84.2911	0/1:40:17,23:17:597:23:828:-62.8029,0,-42.0149	0/1:144:74,70:74:2641:70:2500:-181.905,0,-194.587	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	0/1:81:56,25:56:2008:25:892:-56.2163,0,-156.61	0/1:36:13,23:13:468:23:828:-64.007,0,-31.6226	1/1:105:0,105:0:0:105:3768:-339.318,-31.6082,0	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	0/1:282:145,137:145:5197:137:4900:-356.262,0,-382.976	1/1:189:0,189:0:0:189:6764:-608.831,-56.8947,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	1/1:189:0,189:0:0:189:6767:-609.102,-56.8947,0	0/1:167:79,88:79:2844:88:3164:-234.712,0,-205.925	1/1:118:0,118:0:0:118:4216:-379.621,-35.5215,0	0/1:8:2,6:2:72:6:208:-16.6503,0,-4.42848	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:196:101,95:101:3624:95:3416:-248.651,0,-267.363	0/1:184:82,102:82:2948:102:3656:-273.854,0,-210.163	1/1:80:0,80:0:0:80:2863:-257.907,-24.0824,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:157:0,157:0:0:157:5628:-506.64,-47.2617,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:131:0,131:0:0:131:4691:-422.35,-39.4349,0	1/1:73:0,73:0:0:73:2615:-235.597,-21.9752,0	1/1:81:0,81:0:0:81:2880:-259.435,-24.3834,0	0/1:59:26,33:26:936:33:1180:-88.7473,0,-66.7987	0/1:111:45,66:45:1616:66:2357:-178.973,0,-112.316	1/1:193:3,190:3:108:190:6783:-600.468,-48.0236,0	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	0/1:167:84,83:84:3001:83:2988:-218.879,0,-220.048	1/1:123:0,123:0:0:123:4412:-397.251,-37.0267,0	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	1/1:112:0,112:0:0:112:4016:-361.628,-33.7154,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:30:14,16:14:504:16:572:-42.7825,0,-36.6672	0/1:108:54,54:54:1928:54:1927:-141.192,0,-141.286	0/1:27:9,18:9:324:18:636:-49.4402,0,-21.378	.:.:.:.:.:.:.:.	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:54:0,54:0:0:54:1925:-173.525,-16.2556,0	0/1:151:76,75:76:2728:75:2700:-197.788,0,-200.307	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:179:95,84:95:3408:84:3016:-217.786,0,-253.05	1/1:250:1,249:1:36:249:8936:-800.62,-71.6592,0	0/1:97:37,60:37:1328:60:2137:-163.396,0,-90.6223	1/1:90:0,90:0:0:90:3224:-290.382,-27.0927,0	0/1:128:41,87:41:1468:87:3120:-242.494,0,-93.8843	1/1:100:0,100:0:0:100:3562:-320.788,-30.103,0	0/1:41:19,22:19:684:22:788:-58.9026,0,-49.5481	1/1:75:0,75:0:0:75:2679:-241.354,-22.5773,0	1/1:118:0,117:0:0:117:4185:-376.471,-35.2205,0	0/1:37:18,19:18:644:19:680:-50.3911,0,-47.1525	1/1:107:0,107:0:0:107:3832:-345.077,-32.2102,0	1/1:118:0,118:0:0:118:4240:-381.778,-35.5215,0	1/1:172:0,172:0:0:172:6172:-555.576,-51.7772,0	0/1:286:148,138:148:5286:138:4919:-356.765,0,-389.778	1/1:174:0,174:0:0:174:6237:-561.423,-52.3792,0	0/1:197:88,109:88:3164:109:3903:-292.161,0,-225.681	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:182:98,84:98:3509:84:3008:-216.164,0,-261.231	1/1:128:0,128:0:0:128:4554:-410.026,-38.5318,0	1/1:195:1,194:1:21:194:6944:-622.923,-56.6009,0	0/1:128:63,65:63:2260:65:2312:-169.807,0,-165.131	1/1:70:0,69:0:0:69:2476:-222.734,-20.7711,0	1/1:96:0,96:0:0:96:3446:-310.352,-28.8989,0	0/1:151:70,81:70:2520:81:2894:-215.239,0,-181.596	1/1:35:0,35:0:0:35:1244:-112.264,-10.5361,0	0/1:86:37,49:37:1324:49:1760:-132.795,0,-93.5735	1/1:89:0,89:0:0:89:3188:-287.144,-26.7917,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:106:55,51:55:1980:51:1805:-130.821,0,-146.565	0/1:74:47,27:47:1684:27:968:-65.1611,0,-129.571	1/1:60:0,60:0:0:60:2138:-192.686,-18.0618,0	1/1:134:1,132:1:36:132:4740:-423.159,-36.7985,0
chr11	9694778	.	CCT	CCA,TCC	308714	PASS	AB=0.600371,0.395709;ABP=427.148,460.924;AC=145,39;AF=0.788043,0.211957;AN=184;AO=10274,1924;CIGAR=2M1X,1X1M1X;DP=12250;DPB=12446;DPRA=0,0.984487;EPP=22286.7,4163.57;EPPR=29.068;GTI=5;LEN=1,3;MEANALT=1.8913,2.33333;MQM=59.976,59.8176;MQMR=57.0833;NS=92;NUMALT=2;ODDS=3.11205;PAIRED=0,0;PAIREDR=0;PAO=143.5,299;PQA=30,10322;PQR=30;PRO=143.5;QA=349902,66156;QR=299;RO=12;RPL=4069,2;RPP=967.322,4163.57;RPPR=29.068;RPR=6205,1922;RUN=1,1;SAF=4066,0;SAP=972.747,4180.92;SAR=6208,1924;SRF=0;SRP=29.068;SRR=12;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,41,0:0:0:41,0:1364,0:-122.797,-12.3422,0,-122.797,-12.3422,-122.797	1/2:111:1,53,56:1:27:53,56:1816,1919:-300.78,-153.659,-139.832,-145.303,0,-130.573	1/1:111:0,111,0:0:0:111,0:3747,0:-337.442,-33.4143,0,-337.442,-33.4143,-337.442	1/2:255:0,164,91:0:0:164,91:5675,3155:-717.678,-256.511,-207.142,-461.513,0,-434.119	1/1:112:0,110,0:0:0:110,0:3850,0:-346.474,-33.1133,0,-346.474,-33.1133,-346.474	1/1:59:0,59,0:0:0:59,0:1950,0:-175.768,-17.7608,0,-175.768,-17.7608,-175.768	1/1:170:1,167,0:1:20:167,0:5742,0:-514.812,-48.8264,0,-515.113,-50.272,-516.611	1/1:136:0,136,0:0:0:136,0:4443,0:-399.708,-40.9401,0,-399.708,-40.9401,-399.708	1/2:90:0,42,48:0:0:42,48:1411,1659:-249.083,-134.785,-122.142,-114.296,0,-99.8461	1/1:154:0,152,1:0:0:152,1:5220,36:-469.674,-45.7566,0,-466.736,-42.7392,-466.435	1/1:197:0,197,0:0:0:197,0:6815,0:-613.44,-59.3029,0,-613.44,-59.3029,-613.44	1/2:86:0,37,48:0:0:37,48:1121,1629:-221.828,-132.104,-120.966,-89.7202,0,-75.2707	1/2:94:0,47,47:0:0:47,47:1509,1633:-254.364,-132.753,-118.604,-121.598,0,-107.449	1/1:196:0,196,0:0:0:196,0:6661,0:-599.598,-59.0019,0,-599.598,-59.0019,-599.598	1/2:112:0,79,32:0:0:79,32:2670,1098:-305.596,-89.1701,-65.3888,-216.447,0,-206.814	1/1:153:0,153,0:0:0:153,0:5260,0:-473.555,-46.0576,0,-473.555,-46.0576,-473.555	1/1:116:0,115,0:0:0:115,0:3826,0:-344.195,-34.6185,0,-344.195,-34.6185,-344.195	1/2:90:0,39,50:0:0:39,50:1264,1696:-239.489,-137.509,-125.769,-101.972,0,-86.9205	1/2:55:0,30,25:0:0:30,25:975,871:-149.507,-70.8273,-61.7964,-78.6717,0,-71.1459	1/2:172:0,114,58:0:0:114,58:3894,1982:-476.833,-160.829,-126.511,-315.986,0,-298.527	1/1:216:0,214,1:0:0:214,1:7312,27:-657.903,-64.4204,0,-655.775,-62.2816,-655.474	1/2:137:0,59,78:0:0:59,78:2002,2749:-386.508,-224.167,-206.406,-162.686,0,-139.205	1/2:75:0,42,33:0:0:42,33:1469,1132:-211.76,-92.2467,-79.6035,-119.859,0,-109.925	1/1:133:1,130,0:1:25:130,0:4452,0:-398.292,-37.2217,0,-398.593,-39.1339,-400.541	1/1:153:1,152,0:1:36:152,0:5236,0:-467.796,-42.4593,0,-468.098,-45.7566,-471.035	1/2:335:0,182,151:0:0:182,151:6222,5223:-929.396,-424.436,-369.648,-504.984,0,-459.528	1/1:362:0,361,0:0:0:361,0:12433,0:-1118.6,-108.672,0,-1118.6,-108.672,-1118.6	1/1:77:0,77,0:0:0:77,0:2543,0:-229.12,-23.1793,0,-229.12,-23.1793,-229.12	1/1:382:2,378,0:2:47:378,0:13064,0:-1171.52,-110.565,0,-1172.12,-113.789,-1175.38	1/2:148:0,105,42:0:0:105,42:3679,1437:-416.001,-116.633,-85.0251,-299.372,0,-286.729	1/1:205:0,205,0:0:0:205,0:6957,0:-626.229,-61.7112,0,-626.229,-61.7112,-626.229	1/2:8:0,7,1:0:0:7,1:248,36:-23.4951,-3.29724,-1.19003,-20.557,0,-20.256	1/1:18:0,18,0:0:0:18,0:626,0:-56.6633,-5.41854,0,-56.6633,-5.41854,-56.6633	1/1:2:0,2,0:0:0:2,0:57,0:-5.38332,-0.60206,0,-5.38332,-0.60206,-5.38332	.:.:.:.:.:.:.:.	1/1:4:0,4,0:0:0:4,0:135,0:-12.4825,-1.20412,0,-12.4825,-1.20412,-12.4825	1/2:352:0,218,133:0:0:218,133:7380,4597:-971.641,-373.316,-307.691,-598.308,0,-558.271	1/2:176:1,122,53:1:28:122,53:4200,1828:-487.103,-146.283,-111.775,-338.908,0,-325.172	1/1:83:0,83,0:0:0:83,0:2668,0:-240.142,-24.9855,0,-240.142,-24.9855,-240.142	.:.:.:.:.:.:.:.	1/1:253:0,252,1:0:0:252,1:8663,36:-779.336,-75.8596,0,-776.398,-72.5623,-776.097	1/1:76:0,76,0:0:0:76,0:2577,0:-232.181,-22.8783,0,-232.181,-22.8783,-232.181	1/1:224:0,223,0:0:0:223,0:7765,0:-698.542,-67.1297,0,-698.542,-67.1297,-698.542	1/1:210:0,208,0:0:0:208,0:7009,0:-630.56,-62.6142,0,-630.56,-62.6142,-630.56	1/1:139:0,138,0:0:0:138,0:4584,0:-412.505,-41.5421,0,-412.505,-41.5421,-412.505	1/2:126:0,78,47:0:0:78,47:2721,1597:-350.905,-129.592,-106.111,-221.384,0,-207.236	1/2:109:0,67,41:0:0:67,41:2223,1399:-293.344,-113.517,-93.348,-179.828,0,-167.486	1/1:242:0,241,1:0:0:241,1:8350,36:-751.173,-72.5482,0,-748.236,-69.251,-747.935	1/1:137:0,136,0:0:0:136,0:4719,0:-424.671,-40.9401,0,-424.671,-40.9401,-424.671	1/2:113:0,76,37:0:0:76,37:2636,1250:-315.567,-101.297,-78.4186,-214.251,0,-203.113	1/1:191:0,191,0:0:0:191,0:6630,0:-596.798,-57.4967,0,-596.798,-57.4967,-596.798	1/2:9:0,4,5:0:0:4,5:140,167:-25.251,-13.8533,-12.6492,-11.7405,0,-10.2353	1/1:89:0,89,0:0:0:89,0:2997,0:-269.115,-26.7917,0,-269.115,-26.7917,-269.115	1/1:92:0,91,1:0:0:91,1:3210,36:-288.764,-27.3937,0,-285.827,-24.0965,-285.526	1/2:13:0,9,4:0:0:9,4:307,139:-36.5537,-11.6481,-8.93882,-25.251,0,-24.0468	1/2:131:0,84,47:0:0:84,47:2913,1613:-367.723,-130.945,-105.658,-236.764,0,-222.616	1/2:83:0,41,42:0:0:41,42:1399,1460:-232.564,-119.049,-106.706,-113.86,0,-101.2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chr11	9891636	.	C	T	11482.3	PASS	AB=0.396275;ABP=183.649;AC=34;AF=0.182796;AN=186;AO=776;CIGAR=1X;DP=5138;DPB=5138;DPRA=1.13983;EPP=1688.07;EPPR=9466.29;GTI=3;LEN=1;MEANALT=1.025;MQM=59.9433;MQMR=59.992;NS=93;NUMALT=1;ODDS=0.876874;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=27778;QR=155878;RO=4358;RPL=0;RPP=1688.07;RPPR=9466.29;RPR=776;RUN=1;SAF=776;SAP=1688.07;SAR=0;SRF=4358;SRP=9466.29;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:45:34,11:34:1224:11:396:-22.4364,0,-96.9207	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.291	0/1:96:56,40:56:2012:40:1436:-100.639,0,-152.454	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:51:51,0:51:1798:0:0:0,-15.3525,-162.098	0/0:106:106,0:106:3781:0:0:0,-31.9092,-340.488	0/1:32:22,10:22:788:10:356:-22.7483,0,-61.6118	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.867	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/1:58:36,22:36:1296:22:788:-53.7851,0,-99.476	0/1:58:29,29:29:1044:29:1040:-76.4542,0,-76.8151	0/0:95:95,0:95:3384:0:0:0,-28.5978,-304.774	0/1:51:25,26:25:900:26:906:-66.4984,0,-65.9685	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:58:57,0:57:2052:0:0:0,-17.1587,-184.592	0/1:41:35,6:35:1260:6:216:-7.44828,0,-101.363	0/1:25:18,7:18:639:7:252:-15.5032,0,-50.3125	0/1:75:51,24:51:1824:24:849:-54.1506,0,-141.864	0/0:64:63,1:63:2252:1:36:0,-15.6676,-199.345	0/1:36:22,14:22:792:14:496:-34.1372,0,-60.7686	0/1:24:14,10:14:504:10:360:-25.5172,0,-38.4734	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.564	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:108:90,18:90:3224:18:628:-24.2031,0,-257.871	0/0:130:130,0:130:4641:0:0:0,-39.1339,-417.852	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:130:130,0:130:4672:0:0:0,-39.1339,-420.639	0/1:70:53,17:53:1904:17:608:-33.9799,0,-150.566	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.705	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:141:86,55:86:3088:55:1976:-135.669,0,-235.702	0/0:64:58,5:58:2072:5:180:0,-2.73941,-170.205	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/0:117:117,0:117:4165:0:0:0,-35.2205,-375.033	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:40:29,11:29:1036:11:390:-23.3976,0,-81.5127	0/1:31:27,4:27:968:4:144:-3.98169,0,-78.1054	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.486	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:57:32,25:32:1125:25:900:-64.1623,0,-84.3973	0/0:113:113,0:113:3999:0:0:0,-34.0164,-360.098	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	.:.:.:.:.:.:.:.	0/1:49:24,25:24:860:25:896:-66.2095,0,-62.9714	0/0:20:19,1:19:680:1:36:0,-2.42232,-57.9309	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:81:47,34:47:1688:34:1220:-85.7234,0,-127.824	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:110:48,62:48:1716:62:2232:-168.03,0,-121.612	0/0:94:93,1:93:3328:1:36:0,-24.6985,-296.14	0/1:47:28,19:28:1004:19:684:-47.7419,0,-76.5275	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:51:31,20:31:1116:20:720:-49.7762,0,-85.3992	0/0:43:42,1:42:1500:1:36:0,-9.34601,-131.696	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/0:73:73,0:73:2605:0:0:0,-21.9752,-234.696	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:158:157,1:157:5597:1:36:0,-43.9645,-500.255	0/1:89:43,46:43:1506:46:1637:-120.825,0,-109.037	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:80:41,39:41:1472:39:1396:-101.857,0,-108.694	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:37:25,12:25:896:12:432:-28.0831,0,-69.8222	0/0:42:41,0:41:1468:0:0:0,-12.3422,-132.203	0/0:91:90,0:90:3221:0:0:0,-27.0927,-289.751	0/1:67:42,25:42:1504:25:900:-61.1162,0,-115.486	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:84:47,37:47:1688:37:1328:-94.5357,0,-126.92	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:66:41,25:41:1476:25:896:-61.0924,0,-113.268	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.821	0/1:89:42,47:42:1504:47:1688:-125.415,0,-108.863	0/1:43:19,24:19:684:24:856:-64.4168,0,-48.946	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587
chr11	9891804	.	T	C	117844	PASS	AB=0.623433;ABP=340.729;AC=153;AF=0.81383;AN=188;AO=5384;CIGAR=1X;DP=6359;DPB=6359;DPRA=0;EPP=11332.3;EPPR=2053.32;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.9653;MQMR=60;NS=94;NUMALT=1;ODDS=0.828651;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191916;QR=34816;RO=972;RPL=5342;RPP=11332.3;RPPR=2053.32;RPR=42;RUN=1;SAF=0;SAP=11694.2;SAR=5384;SRF=0;SRP=2113.68;SRR=972;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:67:26,41:26:932:41:1456:-111.165,0,-64.0299	1/1:176:0,176:0:0:176:6290:-565.877,-52.9813,0	0/1:204:75,129:75:2676:129:4582:-351.136,0,-179.676	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:71:0,70:0:0:70:2488:-223.958,-21.0721,0	1/1:45:0,45:0:0:45:1589:-143.298,-13.5464,0	0/1:45:12,33:12:432:33:1166:-91.6989,0,-25.6748	1/1:59:0,59:0:0:59:2094:-188.728,-17.7608,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:44:11,33:11:396:33:1180:-93.2627,0,-22.7374	0/1:54:22,32:22:792:32:1148:-87.3742,0,-55.3501	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:56:35,21:35:1260:21:752:-51.1486,0,-96.8478	1/1:45:0,45:0:0:45:1603:-144.559,-13.5464,0	1/1:22:0,22:0:0:22:792:-71.5975,-6.62266,0	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	1/1:23:1,22:1:36:22:781:-67.0138,-3.32542,0	0/1:140:32,108:32:1148:108:3868:-306.171,0,-61.4856	1/1:118:0,118:0:0:118:4221:-380.069,-35.5215,0	0/1:61:13,48:13:468:48:1696:-134.561,0,-24.0968	0/1:88:12,76:12:432:76:2720:-218.551,0,-12.7306	1/1:28:0,28:0:0:28:992:-89.5888,-8.42884,0	1/1:69:0,69:0:0:69:2457:-221.348,-20.7711,0	0/1:154:57,97:57:2048:97:3471:-266.242,0,-138.233	1/1:128:0,128:0:0:128:4560:-410.564,-38.5318,0	1/1:24:0,23:0:0:23:824:-74.1236,-6.92369,0	1/1:267:0,267:0:0:267:9538:-858.377,-80.375,0	0/1:66:19,47:19:680:47:1679:-131.518,0,-41.6612	1/1:116:1,115:1:36:115:4140:-369.175,-31.3212,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:7:0,7:0:0:7:252:-22.9215,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:112:47,65:47:1692:65:2336:-176.784,0,-118.851	0/1:78:24,54:24:830:54:1932:-150.676,0,-51.532	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:165:0,165:0:0:165:5896:-530.72,-49.67,0	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	1/1:136:0,136:0:0:136:4864:-437.911,-40.9401,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:42:0,42:0:0:42:1512:-135.747,-12.6433,0	0/1:67:12,55:12:432:55:1968:-157.226,0,-19.0522	0/1:62:10,52:10:356:52:1845:-147.642,0,-13.7174	1/1:88:2,86:2:72:86:3057:-268.522,-19.6539,0	1/1:55:0,55:0:0:55:1938:-174.695,-16.5567,0	0/1:106:44,62:44:1584:62:2218:-167.976,0,-110.942	1/1:108:0,108:0:0:108:3806:-342.735,-32.5112,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:156:0,156:0:0:156:5554:-499.984,-46.9607,0	1/1:73:1,72:1:36:72:2563:-227.32,-18.3769,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:71:31,40:31:1104:40:1411:-105.912,0,-78.2975	0/1:31:4,27:4:144:27:963:-77.654,0,-3.98169	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:50:19,31:19:680:31:1116:-85.7002,0,-46.4777	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:187:114,73:114:4096:73:2604:-178.315,0,-312.531	1/1:114:3,111:3:108:111:3957:-346.246,-24.2423,0	0/1:35:17,18:17:608:18:644:-47.7545,0,-44.516	1/1:72:0,72:0:0:72:2542:-229.029,-21.6742,0	0/1:138:45,93:45:1597:93:3317:-257.205,0,-102.476	1/1:118:1,117:1:36:117:4158:-370.804,-31.9233,0	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	1/1:61:0,61:0:0:61:2173:-195.835,-18.3628,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	1/1:48:0,48:0:0:48:1717:-154.814,-14.4494,0	1/1:72:0,72:0:0:72:2578:-232.267,-21.6742,0	0/1:173:87,86:87:3120:86:3047:-222.377,0,-228.948	1/1:103:2,101:2:72:101:3585:-316.022,-24.1694,0	0/1:84:38,46:38:1349:46:1631:-121.792,0,-96.4218	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:82:31,51:31:1116:51:1836:-140.836,0,-76.0672	1/1:123:0,123:0:0:123:4384:-394.731,-37.0267,0	1/1:161:0,161:0:0:161:5688:-512.039,-48.4658,0	0/1:35:13,22:13:468:22:788:-60.7087,0,-31.9236	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:33:0,33:0:0:33:1139:-102.809,-9.93399,0	0/1:78:26,52:26:932:52:1864:-144.559,0,-60.7185	1/1:13:0,13:0:0:13:459:-41.6441,-3.91339,0	0/1:38:19,19:19:680:19:684:-50.4512,0,-50.09	1/1:60:0,60:0:0:60:2129:-191.876,-18.0618,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:39:8,31:8:288:31:1093:-86.9375,0,-14.5272	0/1:60:37,23:37:1328:23:818:-55.8801,0,-101.76	1/1:123:0,123:0:0:123:4344:-391.063,-37.0267,0	1/1:82:0,81:0:0:81:2874:-258.653,-24.3834,0
chr11	9891834	.	A	T	114547	PASS	AB=0.629442;ABP=375.721;AC=151;AF=0.803191;AN=188;AO=5350;CIGAR=1X;DP=6343;DPB=6343;DPRA=0;EPP=11620.4;EPPR=2159.28;GTI=4;LEN=1;MEANALT=1;MQM=59.9639;MQMR=59.9698;NS=94;NUMALT=1;ODDS=0.585374;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191191;QR=35565;RO=993;RPL=5350;RPP=11620.4;RPPR=2133.3;RPR=0;RUN=1;SAF=0;SAP=11620.4;SAR=5350;SRF=3;SRP=2133.3;SRR=990;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1708:-154.006,-14.4494,0	0/1:68:25,43:25:900:43:1491:-114.007,0,-60.851	1/1:173:1,172:1:36:172:6130:-547.884,-48.4799,0	0/1:203:74,129:74:2640:129:4605:-353.505,0,-176.738	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:70:1,69:1:36:69:2476:-219.495,-17.4738,0	1/1:44:0,44:0:0:44:1572:-141.771,-13.2453,0	0/1:46:12,34:12:428:34:1216:-95.8992,0,-25.0114	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:45:12,33:12:432:33:1188:-93.6822,0,-25.6748	0/1:54:22,32:22:788:32:1148:-87.3742,0,-54.9892	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:56:35,21:35:1260:21:752:-51.1486,0,-96.8478	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:22:1,21:1:36:21:741:-63.4051,-3.02439,0	0/1:20:6,14:6:212:14:489:-38.3183,0,-13.4042	1/1:23:2,21:2:72:21:756:-61.5305,-0.0869676,0	0/1:134:31,103:31:1112:103:3631:-286.656,0,-60.0533	1/1:115:2,113:2:72:113:4040:-356.952,-27.7817,0	0/1:60:13,47:13:468:47:1657:-131.354,0,-24.3978	0/1:86:11,75:11:392:75:2688:-216.276,0,-9.73148	1/1:28:0,28:0:0:28:999:-90.2217,-8.42884,0	1/1:71:0,71:0:0:71:2525:-227.465,-21.3731,0	0/1:149:53,96:53:1908:96:3433:-264.328,0,-127.144	1/1:127:0,127:0:0:127:4558:-410.385,-38.2308,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:272:0,272:0:0:272:9711:-873.937,-81.8802,0	0/1:64:18,46:18:648:46:1652:-129.692,0,-39.386	1/1:122:1,121:1:36:121:4309:-384.381,-33.1274,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:7:0,7:0:0:7:252:-22.9215,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:112:45,67:45:1616:67:2400:-182.541,0,-112.015	0/1:79:26,53:26:928:53:1904:-147.856,0,-60.0569	1/1:42:1,41:1:36:41:1468:-128.818,-9.04499,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:168:4,164:4:144:164:5888:-516.686,-37.2594,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:139:0,139:0:0:139:4957:-446.28,-41.8432,0	1/1:45:0,45:0:0:45:1604:-144.65,-13.5464,0	1/1:42:1,41:1:36:41:1476:-130.233,-9.7405,0	0/1:66:15,51:15:536:51:1832:-145.293,0,-28.7068	0/1:62:11,51:11:396:51:1823:-145.665,0,-17.3189	1/1:85:2,83:2:68:83:2965:-260.624,-19.1298,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:107:43,64:43:1544:64:2304:-175.183,0,-107.043	1/1:107:3,104:3:104:104:3728:-326.018,-22.5074,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:152:1,151:1:36:151:5393:-481.902,-42.1583,0	1/1:76:0,76:0:0:76:2713:-244.412,-22.8783,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:70:27,43:27:956:43:1525:-116.469,0,-65.2836	0/1:29:3,26:3:108:26:928:-75.1084,0,-1.3453	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:52:19,33:19:680:33:1183:-91.1246,0,-45.8756	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:185:110,75:110:3933:75:2684:-186.114,0,-298.47	1/1:117:4,113:4:144:113:4041:-350.563,-21.9069,0	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	1/1:68:3,65:3:108:65:2332:-200.064,-10.3949,0	0/1:137:43,94:43:1536:94:3320:-257.78,0,-97.292	1/1:120:2,118:2:72:118:4210:-372.242,-29.2869,0	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:80:0,80:0:0:80:2860:-257.638,-24.0824,0	1/1:47:1,46:1:36:46:1636:-143.93,-10.5501,0	1/1:73:0,73:0:0:73:2590:-233.344,-21.9752,0	0/1:169:82,87:82:2928:87:3120:-230.152,0,-212.881	1/1:104:3,101:3:108:101:3608:-314.852,-21.232,0	0/1:84:38,46:38:1368:46:1648:-123.322,0,-98.1343	0/1:6:3,3:3:108:3:108:-8.25478,0,-8.26899	0/1:84:32,52:32:1140:52:1864:-142.753,0,-77.6227	1/1:121:0,121:0:0:121:4324:-389.337,-36.4246,0	1/1:160:3,157:3:108:157:5637:-497.371,-38.0896,0	0/1:38:16,22:16:576:22:792:-60.1665,0,-40.7358	1/1:51:3,48:3:108:48:1724:-145.37,-5.27736,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:77:26,51:26:936:51:1828:-141.622,0,-61.3802	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:39:19,20:19:680:20:720:-53.3886,0,-49.789	1/1:61:1,60:1:36:60:2143:-189.539,-14.7646,0	0/1:23:4,19:4:144:19:684:-54.9666,0,-6.38993	0/1:39:8,31:8:288:31:1116:-89.0115,0,-14.5272	0/1:60:38,22:38:1368:22:765:-51.1059,0,-105.359	1/1:117:3,114:3:108:114:4049:-354.295,-25.1453,0	1/1:82:1,81:1:36:81:2897:-257.352,-21.0862,0
chr11	10272016	.	T	A	255706	PASS	AB=0.493123;ABP=5.69809;AC=148;AF=0.787234;AN=188;AO=11892;CIGAR=1X;DP=15227;DPB=15227;DPRA=0;EPP=25826.2;EPPR=7225.33;GTI=0;LEN=1;MEANALT=1.07447;MQM=59.9755;MQMR=59.9732;NS=94;NUMALT=1;ODDS=5.67524;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=426309;QR=119288;RO=3326;RPL=0;RPP=25826.2;RPPR=7225.33;RPR=11892;RUN=1;SAF=11892;SAP=25826.2;SAR=0;SRF=3326;SRP=7225.33;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:215:98,116:98:3516:116:4145:-308.452,0,-251.869	1/1:305:0,305:0:0:305:10949:-985.301,-91.8142,0	0/1:434:210,224:210:7548:224:7998:-588.872,0,-548.709	1/1:149:0,149:0:0:149:5336:-480.371,-44.8535,0	1/1:147:0,147:0:0:147:5275:-474.884,-44.2514,0	1/1:221:0,221:0:0:221:7911:-710.912,-66.5276,0	1/1:217:0,217:0:0:217:7808:-702.736,-65.3235,0	0/1:147:70,77:70:2493:77:2749:-203.399,0,-180.37	1/1:106:1,105:1:36:105:3764:-335.361,-28.3109,0	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	0/1:74:38,36:38:1368:36:1296:-94.6677,0,-101.145	0/1:69:41,28:41:1454:28:1008:-70.2653,0,-110.383	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	0/1:66:29,37:29:1044:37:1328:-99.9543,0,-74.4068	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:77:0,77:0:0:77:2751:-247.832,-23.1793,0	0/1:68:44,24:44:1584:24:860:-57.2518,0,-122.381	0/1:39:18,21:18:648:21:756:-56.6271,0,-46.9117	0/1:383:198,185:198:7097:185:6618:-480.402,0,-523.064	1/1:209:0,209:0:0:209:7489:-674.05,-62.9153,0	0/1:329:222,106:222:7965:106:3797:-242.828,0,-617.771	0/1:145:82,63:82:2940:63:2253:-159.382,0,-221.185	1/1:191:0,191:0:0:191:6856:-617.107,-57.4967,0	1/1:161:0,161:0:0:161:5772:-519.594,-48.4658,0	0/1:489:253,236:253:9076:236:8459:-614.107,0,-669.61	1/1:367:0,367:0:0:367:13159:-1184.11,-110.478,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:576:0,576:0:0:576:20628:-1856,-173.393,0	0/1:256:145,111:145:5200:111:3992:-282.275,0,-391.074	1/1:216:0,216:0:0:216:7748:-697.35,-65.0225,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:29:0,29:0:0:29:1021:-92.2003,-8.72987,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:228:119,108:119:4276:108:3884:-281.059,0,-316.323	0/1:391:196,195:196:7028:195:7000:-512.358,0,-514.859	1/1:58:0,58:0:0:58:2073:-186.839,-17.4597,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:353:0,353:0:0:353:12649:-1138.23,-106.264,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:275:0,275:0:0:275:9827:-884.326,-82.7833,0	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:66:0,66:0:0:66:2365:-213.108,-19.868,0	0/1:189:92,97:92:3308:97:3483:-256.785,0,-241.043	0/1:262:110,152:110:3952:152:5468:-413.375,0,-277	1/1:388:3,385:3:108:385:13820:-1233.4,-106.724,0	1/1:185:0,185:0:0:185:6625:-596.327,-55.6906,0	0/1:221:99,122:99:3560:122:4350:-325.145,0,-254.079	1/1:383:0,383:0:0:383:13686:-1231.51,-115.294,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:253:0,253:0:0:253:9073:-816.542,-76.1606,0	1/1:100:0,100:0:0:100:3596:-323.845,-30.103,0	0/1:36:9,27:9:324:27:972:-76.9608,0,-18.6688	0/1:216:92,124:92:3300:124:4452:-335.697,0,-232.196	0/1:95:45,50:45:1612:50:1792:-132.965,0,-116.772	0/1:21:7,14:7:248:14:504:-39.3765,0,-16.3426	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:148:0,148:0:0:148:5312:-478.213,-44.5524,0	0/1:133:73,60:73:2620:60:2145:-153.279,0,-196.01	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:419:235,184:235:8444:184:6596:-467.587,0,-633.826	1/1:348:6,341:6:201:341:12225:-1081.53,-86.3966,0	0/1:127:55,72:55:1972:72:2576:-193.857,0,-139.524	1/1:188:0,188:0:0:188:6752:-607.751,-56.5936,0	0/1:295:146,147:146:5228:147:5252:-384.167,0,-381.989	1/1:163:5,158:5:176:158:5670:-494.232,-32.8829,0	0/1:29:17,12:17:612:12:424:-29.766,0,-46.6836	1/1:133:0,133:0:0:133:4738:-426.575,-40.037,0	1/1:121:0,121:0:0:121:4325:-389.424,-36.4246,0	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	1/1:252:1,251:1:36:251:8975:-804.11,-72.2613,0	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	1/1:251:0,251:0:0:251:9012:-810.964,-75.5585,0	0/1:228:102,124:102:3652:124:4453:-332.546,0,-260.264	1/1:235:0,234:0:0:234:8412:-756.719,-70.441,0	0/1:161:79,82:79:2821:82:2952:-217.447,0,-205.662	0/1:20:8,12:8:273:12:428:-32.8382,0,-18.8796	0/1:186:93,93:93:3332:93:3340:-244.825,0,-244.106	1/1:254:0,254:0:0:254:9105:-819.421,-76.4616,0	1/1:336:0,336:0:0:336:12044:-1083.8,-101.146,0	0/1:118:61,57:61:2188:57:2033:-147.719,0,-161.664	1/1:71:0,71:0:0:71:2543:-229.121,-21.3731,0	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	0/1:136:60,76:60:2156:76:2732:-205.182,0,-153.367	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:90:44,46:44:1576:46:1656:-122.236,0,-115.039	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:104:51,53:51:1832:53:1908:-140.69,0,-133.854	0/1:61:40,21:40:1440:21:756:-50.0044,0,-111.535	1/1:213:0,213:0:0:213:7635:-687.182,-64.1194,0	1/1:99:0,99:0:0:99:3549:-319.616,-29.802,0
chr11	10272039	.	T	G	69620.6	PASS	AB=0.514115;ABP=14.0448;AC=40;AF=0.212766;AN=188;AO=3294;CIGAR=1X;DP=14754;DPB=14754;DPRA=1.15395;EPP=2871.54;EPPR=6286.35;GTI=0;LEN=1;MEANALT=1.11111;MQM=59.9794;MQMR=59.9807;NS=94;NUMALT=1;ODDS=3.46878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117707;QR=409088;RO=11450;RPL=604;RPP=2871.54;RPPR=6286.35;RPR=2690;RUN=1;SAF=3294;SAP=7155.84;SAR=0;SRF=11450;SRP=24866.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:62,0:62:2193:0:0:0,-18.6639,-197.634	0/1:206:111,95:111:3942:95:3402:-244.382,0,-292.959	0/0:292:292,0:292:10459:0:0:0,-87.9008,-941.226	0/1:419:214,203:214:7654:203:7257:-527.293,0,-563.002	0/0:145:145,0:145:5176:0:0:0,-43.6493,-465.979	0/0:138:138,0:138:4915:0:0:0,-41.5421,-442.503	0/0:210:210,0:210:7468:0:0:0,-63.2163,-672.165	0/0:206:206,0:206:7365:0:0:0,-62.0122,-662.889	0/1:143:74,69:74:2631:69:2467:-179.237,0,-193.99	0/0:106:105,1:105:3760:1:36:0,-28.3109,-335.001	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/1:73:35,38:35:1252:38:1368:-101.446,0,-91.0099	0/1:68:27,41:27:959:41:1455:-110.775,0,-66.1554	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:65:36,29:36:1296:29:1040:-74.3474,0,-97.377	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/1:68:24,44:24:851:44:1576:-121.662,0,-56.4394	0/1:38:20,18:20:716:18:648:-47.2127,0,-53.3286	0/1:376:178,198:178:6395:198:7096:-525.081,0,-462.447	0/0:202:202,0:202:7224:0:0:0,-60.8081,-650.209	0/1:322:104,218:104:3700:218:7790:-604.198,0,-236.273	0/1:142:61,81:61:2188:81:2892:-217.77,0,-154.439	0/0:183:183,0:183:6529:0:0:0,-55.0885,-587.694	0/0:151:151,0:151:5375:0:0:0,-45.4555,-483.885	0/1:479:226,253:226:8040:253:9047:-670.013,0,-579.431	0/0:352:350,0:350:12475:0:0:0,-105.36,-1122.23	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:563:563,0:563:20142:0:0:0,-169.48,-1812.29	0/1:255:110,145:110:3931:145:5184:-389.935,0,-277.22	0/0:207:206,0:206:7371:0:0:0,-62.0122,-663.078	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:224:104,120:104:3714:120:4295:-319.296,0,-267.03	0/1:385:189,196:189:6756:196:6941:-508.859,0,-492.219	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:339:339,0:339:12119:0:0:0,-102.049,-1090.56	0/0:40:40,0:40:1425:0:0:0,-12.0412,-128.545	0/0:266:266,0:266:9445:0:0:0,-80.074,-850.015	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:66:66,0:66:2347:0:0:0,-19.868,-211.489	0/1:182:90,92:90:3228:92:3284:-240.99,0,-235.954	0/1:256:146,109:146:5236:109:3904:-274.431,0,-394.254	0/0:376:373,3:373:13284:3:108:0,-103.112,-1185.26	0/0:178:177,0:177:6352:0:0:0,-53.2823,-571.409	0/1:213:116,97:116:4152:97:3476:-248.932,0,-309.744	0/0:377:377,0:377:13510:0:0:0,-113.488,-1215.67	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/0:244:244,0:244:8748:0:0:0,-73.4513,-787.308	0/0:96:96,0:96:3423:0:0:0,-28.8989,-308.284	0/1:34:25,9:25:892:9:324:-19.2708,0,-70.3647	0/1:212:119,93:119:4244:93:3311:-234.391,0,-318.193	0/1:88:46,42:46:1644:42:1508:-109.524,0,-121.758	0/1:19:12,7:12:417:7:252:-17.3094,0,-32.1406	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:143:143,0:143:5088:0:0:0,-43.0473,-458.065	0/1:131:60,71:60:2156:71:2530:-188.515,0,-154.872	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:410:174,236:174:6224:236:8419:-634.292,0,-436.834	0/0:332:326,6:326:11663:6:216:0,-80.1514,-1029.6	0/1:126:71,55:71:2517:55:1980:-140.545,0,-188.851	0/0:184:184,0:184:6564:0:0:0,-55.3895,-589.481	0/1:281:138,143:138:4948:143:5104:-374.905,0,-360.843	0/0:157:152,5:152:5440:5:163:0,-32.2712,-474.739	0/1:30:12,18:12:417:18:648:-49.621,0,-28.8293	0/0:127:127,0:127:4547:0:0:0,-38.2308,-409.396	0/0:118:118,0:118:4208:0:0:0,-35.5215,-378.903	0/1:27:12,15:12:432:15:531:-39.9941,0,-31.0934	0/0:244:243,1:243:8669:1:36:0,-69.853,-776.593	0/0:94:94,0:94:3368:0:0:0,-28.2968,-303.336	0/0:240:239,0:239:8548:0:0:0,-71.9462,-768.869	0/1:220:122,98:122:4368:98:3503:-249.254,0,-327.067	0/0:232:232,0:232:8254:0:0:0,-69.839,-742.874	0/1:157:78,79:78:2781:79:2824:-207.138,0,-203.268	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:182:90,91:90:3232:91:3272:-239.853,0,-236.255	0/0:246:246,0:246:8803:0:0:0,-74.0534,-792.255	0/0:318:318,0:318:11370:0:0:0,-95.7275,-1023.18	0/1:116:56,60:56:2016:60:2145:-158.396,0,-146.793	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.099	0/1:133:72,61:72:2584:61:2188:-157.149,0,-192.772	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.271	0/1:87:43,43:43:1544:43:1527:-111.474,0,-113.005	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/0:39:39,0:39:1395:0:0:0,-11.7402,-125.848	0/1:99:49,50:49:1737:50:1772:-129.958,0,-126.811	0/1:57:16,41:16:576:41:1472:-115.617,0,-35.0163	0/0:209:209,0:209:7462:0:0:0,-62.9153,-671.62	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.571
chr11	10272063	.	G	A	249023	PASS	AB=0.496261;ABP=3.78984;AC=148;AF=0.787234;AN=188;AO=11713;CIGAR=1X;DP=14968;DPB=14968;DPRA=0;EPP=25437.5;EPPR=7071.15;GTI=0;LEN=1;MEANALT=1;MQM=59.9777;MQMR=59.9954;NS=94;NUMALT=1;ODDS=3.34549;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=416841;QR=115882;RO=3255;RPL=11713;RPP=25437.5;RPPR=7071.15;RPR=0;RUN=1;SAF=11713;SAP=25437.5;SAR=0;SRF=3255;SRP=7071.15;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:67:0,67:0:0:67:2380:-214.459,-20.169,0	0/1:210:94,116:94:3360:116:4093:-305.341,0,-239.401	1/1:304:0,304:0:0:304:10820:-973.71,-91.5131,0	0/1:426:207,219:207:7397:219:7825:-576.035,0,-537.538	1/1:146:0,146:0:0:146:5211:-469.13,-43.9504,0	1/1:146:1,145:1:36:145:5128:-458.067,-40.3521,0	1/1:214:0,214:0:0:214:7607:-684.047,-64.4204,0	1/1:217:2,215:2:72:215:7580:-675.41,-58.4868,0	0/1:142:68,74:68:2413:74:2625:-193.751,0,-174.679	1/1:106:1,105:1:36:105:3739:-333.113,-28.3109,0	1/1:65:0,65:0:0:65:2318:-208.879,-19.567,0	0/1:71:35,36:35:1218:36:1280:-94.1301,0,-88.5487	0/1:67:39,28:39:1382:28:981:-68.4315,0,-104.508	1/1:84:0,84:0:0:84:3000:-270.232,-25.2865,0	0/1:64:28,36:28:992:36:1283:-96.5067,0,-70.3285	1/1:35:0,35:0:0:35:1233:-111.272,-10.5361,0	1/1:78:0,78:0:0:78:2783:-250.711,-23.4803,0	0/1:65:42,23:42:1488:23:815:-54.1045,0,-114.648	0/1:38:18,20:18:644:20:712:-52.9675,0,-46.8515	0/1:373:191,182:191:6815:182:6481:-471.093,0,-501.137	1/1:202:0,202:0:0:202:7146:-643.205,-60.8081,0	0/1:319:214,105:214:7607:105:3734:-240.233,0,-588.644	0/1:143:80,63:80:2843:63:2256:-160.256,0,-213.062	1/1:190:0,190:0:0:190:6778:-610.093,-57.1957,0	1/1:158:0,158:0:0:158:5624:-506.282,-47.5627,0	0/1:485:251,234:251:8939:234:8334:-604.072,0,-658.493	1/1:357:0,357:0:0:357:12725:-1145.08,-107.468,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:567:0,567:0:0:567:20241:-1821.2,-170.684,0	0/1:251:140,111:140:5004:111:3951:-280.095,0,-374.95	1/1:213:0,213:0:0:213:7543:-678.917,-64.1194,0	0/1:11:7,4:7:243:4:144:-10.0023,0,-18.8962	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:29:0,29:0:0:29:1024:-92.4726,-8.72987,0	0/1:226:119,107:119:4221:107:3820:-275.965,0,-312.039	0/1:386:197,189:197:7031:189:6733:-489.85,0,-516.612	1/1:55:2,53:2:72:53:1888:-163.362,-9.71993,0	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	1/1:343:0,343:0:0:343:12251:-1102.43,-103.253,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:272:0,272:0:0:272:9703:-873.224,-81.8802,0	1/1:64:1,63:1:36:63:2260:-200.064,-15.6676,0	1/1:67:0,67:0:0:67:2393:-215.626,-20.169,0	0/1:184:88,96:88:3134:96:3413:-251.996,0,-226.894	0/1:258:108,150:108:3829:150:5343:-403.34,0,-267.143	1/1:381:3,378:3:108:378:13455:-1200.64,-104.617,0	1/1:179:0,179:0:0:179:6371:-573.484,-53.8844,0	0/1:216:96,120:96:3432:120:4258:-318.377,0,-244.071	1/1:378:0,378:0:0:378:13446:-1209.94,-113.789,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:249:0,249:0:0:249:8867:-798.019,-74.9565,0	1/1:100:0,100:0:0:100:3552:-319.888,-30.103,0	0/1:36:9,27:9:306:27:959:-75.7883,0,-17.0315	0/1:213:90,123:90:3186:123:4332:-325.931,0,-222.843	0/1:90:40,50:40:1420:50:1747:-130.418,0,-101.005	0/1:19:6,13:6:216:13:460:-36.0158,0,-14.0709	1/1:48:0,48:0:0:48:1695:-152.834,-14.4494,0	1/1:145:0,145:0:0:145:5185:-466.789,-43.6494,0	0/1:131:71,60:71:2527:60:2156:-154.872,0,-188.247	0/1:11:2,9:2:68:9:324:-26.1945,0,-3.14638	0/1:419:238,181:238:8508:181:6415:-451.31,0,-639.59	1/1:341:5,336:5:176:336:11974:-1061.32,-86.4662,0	0/1:126:54,72:54:1917:72:2568:-193.441,0,-134.876	1/1:186:0,186:0:0:186:6600:-593.458,-55.9916,0	0/1:285:142,143:142:5077:143:5067:-370.381,0,-371.28	1/1:157:3,154:3:108:154:5501:-485.141,-37.1865,0	0/1:30:18,12:18:625:12:428:-29.8279,0,-47.5416	1/1:131:0,131:0:0:131:4631:-416.956,-39.4349,0	1/1:119:1,118:1:36:118:4170:-371.882,-32.2243,0	0/1:29:16,13:16:548:13:468:-33.7298,0,-40.9114	1/1:244:2,242:2:72:242:8604:-767.524,-66.6146,0	1/1:97:0,97:0:0:97:3472:-312.692,-29.1999,0	1/1:243:0,243:0:0:243:8606:-774.539,-73.1503,0	0/1:221:99,122:99:3552:122:4327:-323.08,0,-253.36	1/1:235:0,235:0:0:235:8406:-756.542,-70.7421,0	0/1:154:74,80:74:2607:80:2839:-209.391,0,-188.518	0/1:19:7,12:7:252:12:428:-33.1392,0,-17.3094	0/1:184:91,93:91:3240:93:3320:-243.629,0,-236.431	1/1:252:0,252:0:0:252:8981:-808.271,-75.8596,0	1/1:332:0,332:0:0:332:11835:-1065.01,-99.942,0	0/1:116:58,58:58:2059:58:2068:-151.472,0,-150.661	1/1:70:0,70:0:0:70:2482:-223.633,-21.0721,0	1/1:88:1,87:1:36:87:3111:-276.618,-22.8924,0	0/1:135:60,75:60:2144:75:2679:-200.716,0,-152.589	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:87:42,45:42:1491:45:1599:-118.01,0,-108.294	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:103:50,53:50:1783:53:1891:-139.461,0,-129.746	0/1:62:41,21:41:1468:21:737:-47.9868,0,-113.752	1/1:212:0,212:0:0:212:7548:-679.363,-63.8184,0	1/1:98:0,98:0:0:98:3478:-313.23,-29.5009,0
chr11	10272071	.	T	A	56040.3	PASS	AB=0.513352;ABP=12.8682;AC=40;AF=0.212766;AN=188;AO=3284;CIGAR=1X;DP=14687;DPB=14687;DPRA=1.15914;EPP=7134.13;EPPR=24738.3;GTI=0;LEN=1;MEANALT=1.06667;MQM=59.9878;MQMR=59.9796;NS=94;NUMALT=1;ODDS=2.59992;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117548;QR=404209;RO=11391;RPL=3284;RPP=7134.13;RPPR=24738.3;RPR=0;RUN=1;SAF=3284;SAP=7134.13;SAR=0;SRF=11391;SRP=24738.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.009	0/1:207:112,95:112:3969:95:3412:-244.98,0,-295.09	0/0:289:289,0:289:10212:0:0:0,-86.9977,-919.021	0/1:421:212,209:212:7524:209:7488:-547.228,0,-550.467	0/0:143:143,0:143:5052:0:0:0,-43.0473,-454.828	0/0:143:143,0:143:5057:0:0:0,-43.0473,-455.28	0/0:208:208,0:208:7372:0:0:0,-62.6142,-662.43	0/0:208:208,0:208:7336:0:0:0,-62.6142,-660.291	0/1:136:66,70:66:2368:70:2496:-183.953,0,-172.438	0/0:102:101,1:101:3593:1:36:0,-27.1068,-319.978	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.743	0/1:74:35,39:35:1251:39:1404:-104.383,0,-90.6181	0/1:68:28,40:28:984:40:1436:-109.068,0,-68.4006	0/0:82:82,0:82:2908:0:0:0,-24.6845,-261.955	0/1:65:37,28:37:1324:28:1000:-70.7484,0,-99.8951	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:76:76,0:76:2695:0:0:0,-22.8783,-242.795	0/1:65:23,42:23:812:42:1503:-115.997,0,-53.834	0/1:36:18,18:18:618:18:648:-47.8148,0,-45.1037	0/1:371:177,194:177:6321:194:6939:-512.894,0,-457.295	0/0:194:194,0:194:6915:0:0:0,-58.3998,-622.42	0/1:325:101,224:101:3572:224:8039:-625.69,0,-223.854	0/1:141:59,82:59:2067:82:2932:-221.67,0,-143.853	0/0:184:184,0:184:6527:0:0:0,-55.3895,-587.518	0/0:154:154,0:154:5431:0:0:0,-46.3586,-488.926	0/1:472:224,247:224:7952:247:8832:-652.723,0,-573.563	0/0:350:350,0:350:12422:0:0:0,-105.36,-1117.83	0/0:36:35,0:35:1228:0:0:0,-10.536,-110.61	0/0:560:560,0:560:19897:0:0:0,-168.577,-1790.27	0/1:250:106,144:106:3753:144:5147:-388.114,0,-262.585	0/0:208:208,0:208:7337:0:0:0,-62.6142,-660.387	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:16:16,0:16:549:0:0:0,-4.81648,-49.7324	0/0:28:27,0:27:956:0:0:0,-8.12781,-85.9961	0/1:225:105,120:105:3686:120:4303:-319.714,0,-264.214	0/1:381:187,194:187:6668:194:6937:-509.658,0,-485.509	0/0:51:50,0:50:1792:0:0:0,-15.0515,-161.203	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:341:341,0:341:12092:0:0:0,-102.651,-1088.14	0/0:40:40,0:40:1410:0:0:0,-12.0412,-127.196	0/0:259:259,0:259:9212:0:0:0,-77.9668,-829.054	0/0:63:63,0:63:2236:0:0:0,-18.9649,-201.504	0/0:65:65,0:65:2293:0:0:0,-19.5669,-206.63	0/1:181:91,90:91:3230:90:3224:-235.896,0,-236.436	0/1:259:150,109:150:5304:109:3920:-275.024,0,-399.533	0/0:371:368,3:368:13068:3:108:0,-101.607,-1165.77	0/0:179:179,0:179:6372:0:0:0,-53.8844,-573.572	0/1:215:117,98:117:4171:98:3487:-249.318,0,-310.852	0/0:370:370,0:370:13097:0:0:0,-111.381,-1178.55	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/0:244:244,0:244:8726:0:0:0,-73.4513,-785.331	0/0:93:93,0:93:3323:0:0:0,-27.9958,-299.288	0/1:34:26,8:26:924:8:288:-16.0324,0,-73.2426	0/1:212:122,90:122:4306:90:3216:-225.845,0,-323.847	0/1:88:46,42:46:1632:42:1508:-109.524,0,-120.678	0/1:19:12,7:12:424:7:252:-17.3094,0,-32.7768	0/0:46:45,0:45:1586:0:0:0,-13.5463,-142.786	0/0:143:143,0:143:5103:0:0:0,-43.0473,-459.414	0/1:129:58,71:58:2062:71:2556:-191.457,0,-147.017	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:412:179,233:179:6389:233:8347:-627.211,0,-451.075	0/0:332:327,5:327:11605:5:180:0,-83.3899,-1027.63	0/1:123:68,55:68:2409:55:1959:-139.558,0,-180.039	0/0:181:181,0:181:6409:0:0:0,-54.4864,-575.542	0/1:288:143,145:143:5111:145:5186:-380.182,0,-373.35	0/0:160:155,5:155:5515:5:180:0,-31.6127,-479.927	0/1:29:12,17:12:432:17:591:-44.7854,0,-30.4913	0/0:128:128,0:128:4536:0:0:0,-38.5318,-408.41	0/0:118:118,0:118:4182:0:0:0,-35.5215,-376.565	0/1:28:12,16:12:432:16:568:-43.023,0,-30.7924	0/0:242:240,2:240:8463:2:72:0,-66.0125,-754.838	0/0:94:94,0:94:3330:0:0:0,-28.2968,-299.919	0/0:235:234,0:234:8250:0:0:0,-70.441,-742.156	0/1:224:124,100:124:4427:100:3562:-253.345,0,-331.172	0/0:225:225,0:225:8007:0:0:0,-67.7317,-720.657	0/1:153:77,76:77:2751:76:2724:-199.345,0,-201.774	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:184:91,93:91:3248:93:3335:-244.977,0,-237.152	0/0:238:238,0:238:8421:0:0:0,-71.6451,-757.903	0/0:325:324,0:324:11501:0:0:0,-97.5337,-1034.61	0/1:115:57,57:57:2018:57:2048:-149.914,0,-147.215	0/0:68:67,0:67:2388:0:0:0,-20.169,-214.857	0/0:86:86,0:86:3065:0:0:0,-25.8886,-276.078	0/1:134:73,61:73:2588:61:2171:-155.318,0,-192.83	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.271	0/1:91:45,45:45:1570:45:1598:-116.657,0,-114.137	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:40:40,0:40:1407:0:0:0,-12.0412,-126.926	0/1:100:50,50:50:1762:50:1796:-131.819,0,-128.759	0/1:60:19,41:19:671:41:1472:-114.714,0,-42.654	0/0:207:206,0:206:7363:0:0:0,-62.0122,-662.357	0/0:94:93,0:93:3307:0:0:0,-27.9958,-297.49
chr11	10272101	.	A	G	39717.6	PASS	AB=0.515953;ABP=13.1255;AC=42;AF=0.223404;AN=188;AO=2370;CIGAR=1X;DP=11288;DPB=11288;DPRA=1.02576;EPP=5149.4;EPPR=19363.9;GTI=0;LEN=1;MEANALT=1.02326;MQM=59.7025;MQMR=59.9888;NS=94;NUMALT=1;ODDS=0.0133249;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84087;QR=317536;RO=8916;RPL=0;RPP=5149.4;RPPR=19363.9;RPR=2370;RUN=1;SAF=0;SAP=5149.4;SAR=2370;SRF=0;SRP=19363.9;SRR=8916;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.435	0/1:193:91,102:91:3256:102:3628:-268.489,0,-235.162	0/0:185:185,0:185:6563:0:0:0,-55.6905,-590.754	0/1:216:113,103:113:3953:103:3624:-261.323,0,-290.938	0/0:96:96,0:96:3416:0:0:0,-28.8989,-307.653	0/0:68:68,0:68:2415:0:0:0,-20.47,-217.606	0/0:148:148,0:148:5238:0:0:0,-44.5524,-471.564	0/0:223:223,0:223:7913:0:0:0,-67.1297,-712.2	0/1:110:56,54:56:1984:54:1909:-138.959,0,-145.708	0/0:89:89,0:89:3191:0:0:0,-26.7917,-287.399	0/0:69:69,0:69:2454:0:0:0,-20.7711,-221.114	0/1:86:44,42:44:1562:42:1504:-109.759,0,-114.982	0/1:83:43,40:43:1527:40:1432:-104.083,0,-112.737	0/0:116:116,0:116:4122:0:0:0,-34.9195,-371.166	0/1:55:30,25:30:1080:25:892:-64.043,0,-80.9566	0/0:59:59,0:59:2088:0:0:0,-17.7608,-188.188	0/0:88:88,0:88:3139:0:0:0,-26.4906,-282.736	0/1:76:37,39:37:1302:39:1370:-100.713,0,-94.599	0/1:34:19,15:19:684:15:525:-37.3253,0,-51.6553	0/1:208:107,101:107:3795:101:3604:-261.941,0,-279.134	0/0:158:158,0:158:5639:0:0:0,-47.5627,-507.629	0/1:140:51,89:51:1824:89:3167:-243.054,0,-122.297	0/1:58:24,34:24:860:34:1188:-89.7598,0,-60.2621	0/0:131:131,0:131:4690:0:0:0,-39.4349,-422.259	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.485	0/1:312:155,156:155:5545:156:5534:-404.195,0,-405.193	0/0:270:270,0:270:9652:0:0:0,-81.2781,-868.631	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/0:478:478,0:478:17064:0:0:0,-143.892,-1535.4	0/1:191:118,73:118:4213:73:2590:-175.829,0,-321.853	0/0:137:137,0:137:4874:0:0:0,-41.2411,-438.815	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:139:67,72:67:2394:72:2544:-187.364,0,-173.873	0/1:333:165,168:165:5843:168:5961:-436.341,0,-425.741	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:196:196,0:196:6991:0:0:0,-59.0019,-629.254	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:197:197,0:197:6979:0:0:0,-59.3029,-628.178	0/0:53:53,0:53:1874:0:0:0,-15.9546,-168.938	0/0:63:63,0:63:2242:0:0:0,-18.9649,-202.04	0/1:101:53,48:53:1892:48:1724:-125.038,0,-140.154	0/1:176:107,69:107:3812:69:2444:-166.735,0,-290.295	0/0:275:275,0:275:9821:0:0:0,-82.7832,-883.75	0/0:125:125,0:125:4449:0:0:0,-37.6287,-400.582	0/1:134:69,65:69:2443:65:2314:-168.179,0,-179.788	0/0:226:226,0:226:8045:0:0:0,-68.0328,-724.071	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:236:236,0:236:8387:0:0:0,-71.0431,-754.837	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/1:15:4,11:4:144:11:392:-31.1046,0,-8.79817	0/1:168:92,76:92:3282:76:2702:-192.812,0,-245.026	0/1:33:15,18:15:510:18:622:-46.3681,0,-36.2856	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:105:105,0:105:3755:0:0:0,-31.6081,-338.15	0/1:152:62,90:62:2207:90:3209:-243.095,0,-153.138	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:140:45,95:45:1596:95:3359:-260.379,0,-101.783	0/0:304:303,1:303:10773:1:36:0,-87.9148,-965.881	0/1:122:57,65:57:2040:65:2308:-171.216,0,-147.146	0/0:108:107,0:107:3831:0:0:0,-32.2102,-344.626	0/1:122:53,69:53:1883:69:2445:-183.576,0,-133.022	0/0:205:202,3:202:7208:3:108:0,-51.636,-638.699	0/1:40:16,24:16:564:24:845:-64.3259,0,-39.0491	0/0:139:139,0:139:4984:0:0:0,-41.8432,-448.707	0/0:121:121,0:121:4292:0:0:0,-36.4246,-386.459	0/1:26:15,11:15:531:11:388:-27.4296,0,-40.2951	0/0:234:234,0:234:8333:0:0:0,-70.441,-749.982	0/0:78:78,0:78:2766:0:0:0,-23.4803,-249.182	0/0:180:180,0:180:6400:0:0:0,-54.1854,-576.089	0/1:243:115,128:115:4096:128:4565:-337.863,0,-295.672	0/0:274:274,0:274:9797:0:0:0,-82.4822,-881.664	0/1:175:81,94:81:2912:94:3313:-245.639,0,-209.634	0/1:10:7,3:7:252:3:104:-6.69251,0,-20.0187	0/1:148:68,80:68:2436:80:2839:-211.183,0,-174.943	0/0:146:145,1:145:5105:1:36:0,-40.3521,-455.997	0/0:269:269,0:269:9606:0:0:0,-80.9771,-864.493	0/1:114:51,63:51:1815:63:2248:-168.256,0,-129.184	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.216	0/0:56:56,0:56:1983:0:0:0,-16.8577,-178.744	0/1:142:66,76:66:2351:76:2720:-202.297,0,-169.102	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/1:66:29,37:29:1036:37:1308:-98.1433,0,-73.6859	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:129:58,71:58:2065:71:2496:-186.047,0,-147.286	0/1:65:21,44:21:748:44:1554:-120.581,0,-48.0783	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.547	0/0:88:88,0:88:3126:0:0:0,-26.4906,-281.564
chr11	10272106	.	GACT	AACT	191482	PASS	AB=0.47909;ABP=20.5369;AC=146;AF=0.776596;AN=188;AO=8926;CIGAR=1X3M;DP=11366;DPB=11366;DPRA=61.75;EPP=19385.6;EPPR=5197.17;GTI=1;LEN=1;MEANALT=1.41304;MQM=59.9883;MQMR=59.7425;NS=94;NUMALT=1;ODDS=0.402919;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=318613;QR=84508;RO=2392;RPL=0;RPP=19385.6;RPPR=5197.17;RPR=8926;RUN=1;SAF=0;SAP=19385.6;SAR=8926;SRF=0;SRP=5197.17;SRR=2392;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,46:0:0:46:1644:-147.881,-13.8474,0	0/1:192:99,93:99:3520:93:3316:-240.855,0,-259.186	1/1:185:0,184:0:0:184:6540:-588.326,-55.3895,0	0/1:217:104,113:104:3679:113:4010:-295.765,0,-265.97	1/1:95:1,94:1:36:94:3336:-296.859,-24.9996,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:150:0,150:0:0:150:5337:-480.466,-45.1545,0	1/1:225:0,225:0:0:225:8039:-723.531,-67.7318,0	0/1:109:54,55:54:1899:55:1964:-144.219,0,-138.372	1/1:90:0,89:0:0:89:3196:-287.509,-26.7917,0	1/1:68:0,68:0:0:68:2414:-217.516,-20.47,0	0/1:86:42,44:42:1493:44:1580:-116.603,0,-108.77	0/1:83:40,42:40:1430:42:1499:-110.267,0,-103.952	1/1:118:0,118:0:0:118:4215:-379.531,-35.5215,0	0/1:55:25,30:25:889:30:1067:-79.7846,0,-63.7725	1/1:61:0,59:0:0:59:2114:-190.169,-17.7608,0	1/1:89:0,89:0:0:89:3164:-284.984,-26.7917,0	0/1:79:42,37:42:1476:37:1306:-94.0586,0,-109.328	0/1:33:15,18:15:530:18:648:-48.7179,0,-38.087	0/1:212:104,107:104:3672:107:3807:-278.962,0,-266.81	1/1:156:0,156:0:0:156:5561:-500.612,-46.9607,0	0/1:141:91,50:91:3248:50:1796:-119.477,0,-250.04	0/1:59:35,24:35:1225:24:836:-57.7939,0,-92.7885	1/1:132:0,132:0:0:132:4704:-423.52,-39.736,0	1/1:101:0,101:0:0:101:3603:-324.476,-30.404,0	0/1:315:161,153:161:5670:153:5469:-397.562,0,-415.645	1/1:275:0,273:0:0:273:9705:-873.15,-82.1812,0	1/1:33:0,33:0:0:33:1160:-104.705,-9.93399,0	1/1:477:0,477:0:0:477:17023:-1531.71,-143.591,0	0/1:189:73,115:73:2575:115:4088:-311.152,0,-174.992	1/1:136:0,136:0:0:136:4892:-440.429,-40.9401,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:139:73,65:73:2578:65:2324:-167.577,0,-190.407	0/1:336:169,166:169:5961:166:5895:-429.604,0,-435.528	1/1:69:0,69:0:0:69:2471:-222.643,-20.7711,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:195:0,194:0:0:194:6952:-625.462,-58.3998,0	1/1:30:0,30:0:0:30:1071:-96.7016,-9.0309,0	1/1:193:0,193:0:0:193:6888:-619.988,-58.0988,0	1/1:53:0,53:0:0:53:1895:-170.827,-15.9546,0	1/1:63:0,63:0:0:63:2258:-203.48,-18.9649,0	0/1:105:49,56:49:1734:56:1990:-147.765,0,-124.732	0/1:180:72,108:72:2539:108:3855:-292.956,0,-174.081	1/1:279:0,278:0:0:278:9928:-893.193,-83.6863,0	1/1:124:0,124:0:0:124:4419:-397.881,-37.3277,0	0/1:135:65,68:65:2284:68:2436:-179.099,0,-165.423	1/1:228:0,226:0:0:226:8110:-729.642,-68.0328,0	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:237:0,236:0:0:236:8422:-757.62,-71.0431,0	1/1:62:0,62:0:0:62:2216:-199.704,-18.6639,0	0/1:15:11,4:11:371:4:144:-8.79817,0,-29.1989	0/1:167:76,89:76:2701:89:3183:-236.664,0,-193.27	0/1:33:18,15:18:627:15:536:-38.6408,0,-46.8204	0/0:3:3,0:3:107:0:0:0,-0.90309,-9.98217	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:106:0,106:0:0:106:3769:-339.408,-31.9092,0	0/1:153:88,65:88:3126:65:2299:-161.111,0,-235.33	0/1:9:5,1:5:180:1:36:-1.4331,0,-14.3881	0/1:146:99,46:99:3458:46:1650:-104.779,0,-267.427	1/1:301:1,296:1:36:296:10588:-949.241,-86.1655,0	0/1:123:65,56:65:2311:56:1995:-143.111,0,-171.503	1/1:110:0,109:0:0:109:3893:-350.203,-32.8123,0	0/1:124:70,54:70:2455:54:1944:-137.908,0,-183.875	1/1:209:4,204:4:144:204:7298:-643.559,-49.6525,0	0/1:41:24,17:24:856:17:612:-43.0712,0,-65.0192	1/1:140:0,140:0:0:140:5005:-450.596,-42.1442,0	1/1:122:1,121:1:23:121:4309:-385.686,-34.4257,0	0/1:26:11,15:11:388:15:532:-40.3863,0,-27.4299	1/1:239:0,239:0:0:239:8522:-766.964,-71.9462,0	1/1:78:0,77:0:0:77:2732:-245.871,-23.1793,0	1/1:183:0,182:0:0:182:6464:-581.488,-54.7875,0	0/1:243:129,114:129:4564:114:4083:-294.504,0,-337.765	1/1:275:0,274:0:0:274:9780:-879.853,-82.4822,0	0/1:175:90,80:90:3175:80:2863:-206.372,0,-234.394	0/1:10:3,7:3:102:7:252:-20.0187,0,-6.50608	0/1:150:80,70:80:2845:70:2520:-181.897,0,-211.121	1/1:150:1,148:1:36:148:5267:-470.553,-41.615,0	1/1:270:0,268:0:0:268:9599:-863.561,-80.676,0	0/1:116:62,51:62:2192:51:1832:-130.82,0,-163.199	1/1:89:0,89:0:0:89:3170:-285.522,-26.7917,0	1/1:58:0,58:0:0:58:2053:-185.04,-17.4597,0	0/1:141:76,65:76:2684:65:2327:-167.244,0,-199.361	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:66:37,29:37:1311:29:1040:-74.0464,0,-98.4164	1/1:59:0,59:0:0:59:2111:-190.258,-17.7608,0	1/1:50:0,50:0:0:50:1778:-160.301,-15.0515,0	0/1:134:73,61:73:2559:61:2188:-156.848,0,-190.211	0/1:66:44,22:44:1567:22:792:-51.7377,0,-121.452	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:86:0,86:0:0:86:3068:-276.347,-25.8886,0
chr11	10272114	.	TTC	TTT,CTT	249808	PASS	AB=0.483781,0.515575;ABP=13.6465,12.8181;AC=146,42;AF=0.776596,0.223404;AN=188;AO=9041,2413;CIGAR=2M1X,1X1M1X;DP=11472;DPB=11472.7;DPRA=62.3261,1.02259;EPP=19617.9,5242.77;EPPR=7.35324;GTI=0;LEN=1,3;MEANALT=1.65217,2.06522;MQM=59.9817,59.6929;MQMR=60;NS=94;NUMALT=2;ODDS=0.0998837;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=18,18;PQR=0;PRO=0;QA=323723,85199;QR=63;RO=2;RPL=0,0;RPP=19635.3,5242.77;RPPR=7.35324;RPR=9041,2413;RUN=1,1;SAF=2,0;SAP=19617.9,5242.77;SAR=9039,2413;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,47,0:0:0:47,0:1673,0:-150.495,-14.1484,0,-150.495,-14.1484,-150.495	1/2:197:0,94,103:0:0:94,103:3366,3627:-570.085,-295.582,-267.285,-274.858,0,-243.852	1/1:193:0,192,0:0:0:192,0:6892,0:-620.065,-57.7978,0,-620.065,-57.7978,-620.065	1/2:217:0,112,105:0:0:112,105:4011,3652:-624.366,-297.255,-263.54,-327.464,0,-295.855	1/1:96:0,96,0:0:0:96,0:3444,0:-310.172,-28.8989,0,-310.172,-28.8989,-310.172	1/1:68:0,68,0:0:0:68,0:2432,0:-219.136,-20.47,0,-219.136,-20.47,-219.136	1/1:150:0,150,0:0:0:150,0:5364,0:-482.891,-45.1545,0,-482.891,-45.1545,-482.891	1/1:225:0,224,1:0:0:224,1:8044,34:-723.636,-67.4307,0,-720.878,-64.3331,-720.577	1/2:114:0,59,55:0:0:59,55:2087,1943:-328.562,-158.579,-140.818,-170.336,0,-153.779	1/1:90:0,90,0:0:0:90,0:3240,0:-291.806,-27.0927,0,-291.806,-27.0927,-291.806	1/1:70:0,70,0:0:0:70,0:2500,0:-225.253,-21.0721,0,-225.253,-21.0721,-225.253	1/2:86:0,44,41:0:0:44,41:1580,1468:-248.599,-119.712,-106.466,-128.887,0,-116.545	1/2:83:0,43,39:0:0:43,39:1544,1392:-239.361,-113.41,-100.465,-125.953,0,-114.213	1/1:117:0,117,0:0:0:117,0:4191,0:-377.371,-35.2205,0,-377.371,-35.2205,-377.371	1/2:56:0,31,25:0:0:31,25:1112,896:-164.136,-73.4348,-64.1029,-91.0594,0,-83.5337	1/1:62:0,62,0:0:0:62,0:2220,0:-200.064,-18.6639,0,-200.064,-18.6639,-200.064	1/1:88:0,87,0:0:0:87,0:3112,0:-280.026,-26.1896,0,-280.026,-26.1896,-280.026	1/2:79:0,37,42:0:0:37,42:1328,1478:-228.973,-120.644,-109.506,-108.684,0,-96.0409	1/2:34:0,19,15:0:0:19,15:680,527:-98.6975,-43.2419,-37.5224,-55.8096,0,-51.2941	1/2:212:0,107,105:0:0:107,105:3844,3705:-615.54,-301.951,-269.741,-313.945,0,-282.336	1/1:158:0,158,0:0:0:158,0:5636,0:-507.36,-47.5627,0,-507.36,-47.5627,-507.36	1/2:142:0,51,91:0:0:51,91:1832,3199:-410.182,-260.73,-245.378,-149.808,0,-122.415	1/2:59:0,24,35:0:0:24,35:864,1233:-171.236,-100.735,-93.51,-70.8578,0,-60.3218	1/1:131:0,131,0:0:0:131,0:4684,0:-421.72,-39.4349,0,-421.72,-39.4349,-421.72	1/1:102:0,102,0:0:0:102,0:3648,0:-328.524,-30.7051,0,-328.524,-30.7051,-328.524	1/2:318:0,157,161:0:0:157,161:5635,5700:-924.297,-464.647,-417.385,-460.007,0,-411.541	1/1:277:0,276,0:0:0:276,0:9904,0:-890.93,-83.0843,0,-890.93,-83.0843,-890.93	1/1:34:0,34,0:0:0:34,0:1208,0:-109.026,-10.235,0,-109.026,-10.235,-109.026	1/1:484:0,484,0:0:0:484,0:17382,0:-1564,-145.699,0,-1564,-145.699,-1564	1/2:192:0,117,75:0:0:117,75:4183,2653:-557.456,-216.38,-181.159,-341.431,0,-318.854	1/1:140:0,140,0:0:0:140,0:5031,0:-452.933,-42.1442,0,-452.933,-42.1442,-452.933	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/2:142:0,68,74:0:0:68,74:2436,2579:-408.746,-210.074,-189.604,-199.025,0,-176.749	1/2:337:0,167,170:0:0:167,170:5988,5990:-976.416,-488.019,-437.747,-488.753,0,-437.578	1/1:69:0,69,0:0:0:69,0:2459,0:-221.564,-20.7711,0,-221.564,-20.7711,-221.564	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:198:0,197,0:0:0:197,0:7058,0:-634.919,-59.3029,0,-634.919,-59.3029,-634.919	1/1:29:0,29,0:0:0:29,0:1042,0:-94.0947,-8.72987,0,-94.0947,-8.72987,-94.0947	1/1:197:0,197,0:0:0:197,0:7057,0:-635.189,-59.3029,0,-635.189,-59.3029,-635.189	1/1:54:0,54,0:0:0:54,0:1936,0:-174.516,-16.2556,0,-174.516,-16.2556,-174.516	1/1:60:0,59,0:0:0:59,0:2108,0:-189.738,-17.7608,0,-189.738,-17.7608,-189.738	1/2:105:0,56,49:0:0:56,49:2012,1747:-306.897,-142.76,-125.902,-164.495,0,-149.745	1/2:181:0,108,72:0:0:108,72:3864,2540:-521.386,-206.3,-173.788,-315.081,0,-293.407	1/1:278:0,278,0:0:0:278,0:9974,0:-897.581,-83.6863,0,-897.581,-83.6863,-897.581	1/1:125:1,124,0:1:36:124,0:4435,0:-395.723,-34.0305,0,-396.024,-37.3277,-398.961	1/2:135:0,70,65:0:0:70,65:2500,2302:-391.693,-187.867,-166.795,-204.181,0,-184.614	1/1:231:0,230,0:0:0:230,0:8226,0:-740.08,-69.2369,0,-740.08,-69.2369,-740.08	1/2:12:0,6,6:0:0:6,6:216,214:-35.4277,-17.8016,-15.9954,-17.9843,0,-16.1782	1/1:241:0,241,0:0:0:241,0:8644,0:-777.948,-72.5482,0,-777.948,-72.5482,-777.948	1/1:63:0,62,1:0:0:62,1:2232,36:-200.784,-18.6639,0,-197.846,-15.3666,-197.545	1/2:15:0,4,11:0:0:4,11:144,379:-42.8824,-31.1287,-29.9245,-12.1095,0,-8.79817	1/2:173:0,97,76:0:0:97,76:3467,2690:-502.116,-219.429,-190.229,-283.042,0,-260.164	1/2:32:0,14,18:0:0:1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chr11	10274361	.	C	G	58462	PASS	AB=0.231778;ABP=2386.34;AC=137;AF=0.744565;AN=184;AO=3181;CIGAR=1X;DP=6587;DPB=6587;DPRA=11.0438;EPP=6875.76;EPPR=7299.41;GTI=22;LEN=1;MEANALT=1.03409;MQM=59.9849;MQMR=59.9988;NS=92;NUMALT=1;ODDS=0.45224;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113489;QR=120773;RO=3400;RPL=3177;RPP=6875.76;RPPR=7299.41;RPR=4;RUN=1;SAF=3181;SAP=6910.46;SAR=0;SRF=3400;SRP=7386.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/0:185:171,14:171:6069:14:504:0,-9.99246,-500.619	1/1:100:0,100:0:0:100:3571:-321.598,-30.103,0	0/1:190:144,46:144:5115:46:1648:-91.4128,0,-403.3	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:45:0,45:0:0:45:1600:-144.29,-13.5464,0	1/1:26:0,26:0:0:26:917:-82.8446,-7.82678,0	0/1:149:130,19:130:4607:19:671:-15.8623,0,-369.945	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	0/1:102:66,36:66:2357:36:1296:-86.2389,0,-181.682	0/1:77:49,28:49:1745:28:1008:-67.857,0,-134.153	1/1:38:0,38:0:0:38:1333:-120.266,-11.4391,0	0/1:81:53,28:53:1851:28:987:-64.7596,0,-142.481	1/1:50:0,50:0:0:50:1774:-159.941,-15.0515,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	0/1:43:34,9:34:1216:9:324:-16.5616,0,-96.8023	0/1:44:24,20:24:847:20:720:-51.8835,0,-63.3034	0/0:264:244,20:244:8677:20:720:0,-14.3431,-715.798	1/1:65:0,65:0:0:65:2320:-209.061,-19.567,0	0/1:161:133,28:133:4744:28:1008:-42.5705,0,-378.652	0/1:78:61,17:61:2158:17:608:-31.5717,0,-171.006	1/1:34:0,34:0:0:34:1205:-108.755,-10.235,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:352:300,52:300:10645:52:1858:-61.5362,0,-852.007	1/1:81:0,81:0:0:81:2891:-260.426,-24.3834,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:88:0,88:0:0:88:3144:-283.186,-26.4906,0	0/1:98:70,28:70:2491:28:995:-60.3631,0,-194.942	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:208:144,64:144:5161:64:2259:-140.956,0,-402.014	0/1:145:123,22:123:4375:22:775:-26.4218,0,-350.277	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	1/1:31:0,31:0:0:31:1078:-97.3243,-9.33193,0	1/1:64:0,64:0:0:64:2285:-205.911,-19.2659,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:37:0,37:0:0:37:1310:-118.2,-11.1381,0	0/1:47:20,27:20:702:27:959:-72.477,0,-49.3541	0/1:138:121,17:121:4261:17:612:-13.8713,0,-342.129	1/1:77:0,77:0:0:77:2719:-244.951,-23.1793,0	1/1:82:0,82:0:0:82:2939:-264.743,-24.6845,0	0/1:105:81,24:81:2879:24:864:-46.4744,0,-227.739	1/1:76:1,75:1:36:75:2674:-237.306,-19.28,0	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:19:14,5:14:500:5:180:-10.8325,0,-39.6166	0/1:202:172,30:172:6150:30:1072:-35.9844,0,-492.79	0/1:52:36,12:36:1283:12:432:-24.4119,0,-100.964	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:27:0,27:0:0:27:949:-85.6657,-8.12781,0	0/1:120:74,45:74:2639:45:1608:-108.828,0,-201.574	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:213:164,49:164:5845:49:1764:-94.9244,0,-462.044	1/1:66:4,62:4:144:62:2206:-185.49,-6.55436,0	0/1:74:55,19:55:1955:19:684:-39.6141,0,-153.949	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:197:174,23:174:6189:23:819:-14.7287,0,-497.808	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:21:6,15:6:212:15:529:-41.619,0,-13.1032	1/1:22:1,21:1:36:21:752:-64.3998,-3.02439,0	1/1:35:0,35:0:0:35:1250:-112.805,-10.5361,0	0/0:25:23,2:23:819:2:72:0,-0.689027,-67.1948	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	1/1:64:0,64:0:0:64:2288:-206.182,-19.2659,0	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:223:188,35:188:6627:35:1241:-44.8628,0,-529.387	1/1:57:0,57:0:0:57:2043:-184.141,-17.1587,0	0/1:89:80,9:80:2855:9:324:-2.71419,0,-230.396	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:139:117,22:117:4156:22:792:-29.7625,0,-332.38	1/1:46:1,45:1:36:45:1605:-141.14,-10.2491,0	1/1:72:1,71:1:36:71:2519:-223.364,-18.0759,0	0/1:75:56,19:56:1993:19:671:-38.1385,0,-157.065	1/1:49:0,48:0:0:48:1695:-152.473,-14.4494,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:127:80,47:80:2808:47:1675:-112.806,0,-214.727	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:80:49,31:49:1724:31:1099:-75.1371,0,-131.36	1/1:50:0,50:0:0:50:1787:-161.112,-15.0515,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:68:33,35:33:1180:35:1247:-92.064,0,-86.038	0/1:89:69,20:69:2434:20:716:-37.976,0,-192.521	1/1:80:1,79:1:36:79:2802:-248.821,-20.4841,0	1/1:78:1,77:1:36:77:2768:-245.762,-19.8821,0
chr11	10274382	.	G	T	49998.1	PASS	AB=0.163114;ABP=4257.64;AC=129;AF=0.701087;AN=184;AO=3198;CIGAR=1X;DP=9912;DPB=9912;DPRA=9.54062;EPP=6947.38;EPPR=14573.6;GTI=48;LEN=1;MEANALT=1.04545;MQM=59.9844;MQMR=56.3337;NS=92;NUMALT=1;ODDS=0.58581;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=113840;QR=238058;RO=6710;RPL=3197;RPP=6938.7;RPPR=5.86978;RPR=1;RUN=1;SAF=3197;SAP=6938.7;SAR=1;SRF=3402;SRP=5.86978;SRR=3308;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/0:377:364,13:364:12910:13:464:0,-71.3908,-1114.12	1/1:100:0,100:0:0:100:3577:-322.136,-30.103,0	0/1:371:324,47:324:11521:47:1684:-40.1649,0,-923.238	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	1/1:23:0,23:0:0:23:822:-74.3027,-6.92369,0	1/1:46:0,46:0:0:46:1617:-145.814,-13.8474,0	1/1:27:0,27:0:0:27:957:-86.4439,-8.12781,0	0/1:178:159,19:159:5634:19:650:-5.23306,0,-453.085	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:30:0,30:0:0:30:1059:-95.6204,-9.0309,0	0/1:150:114,35:114:4039:35:1252:-67.7718,0,-317.701	0/1:131:102,29:102:3595:29:1040:-54.4794,0,-282.909	1/1:37:0,37:0:0:37:1308:-118.019,-11.1381,0	0/1:119:90,29:90:3201:29:1027:-56.9196,0,-252.281	1/1:50:0,50:0:0:50:1781:-160.572,-15.0515,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/0:85:77,8:77:2739:8:279:0,-0.140016,-220.8	0/1:74:54,20:54:1901:20:702:-41.2263,0,-148.313	0/0:528:508,20:508:18077:20:709:0,-94.8091,-1558.85	1/1:67:0,67:0:0:67:2376:-214.096,-20.169,0	0/1:278:250,28:250:8877:28:1008:-7.35002,0,-714.723	0/1:115:98,17:98:3474:17:599:-19.6196,0,-278.109	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/0:574:524,50:524:18600:50:1792:0,-11.2287,-1509.76	1/1:82:0,82:0:0:82:2930:-263.933,-24.6845,0	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	1/1:88:0,88:0:0:88:3164:-284.984,-26.4906,0	0/1:235:206,28:206:7347:28:1002:-19.6946,0,-587.945	1/1:40:0,40:0:0:40:1405:-126.745,-12.0412,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0124	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:355:293,62:293:10417:62:2215:-92.7484,0,-829.925	0/0:259:237,22:237:8412:22:775:0,-7.89558,-684.897	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:57:0,57:0:0:57:2044:-184.231,-17.1587,0	1/1:32:0,32:0:0:32:1124:-101.466,-9.63296,0	1/1:65:0,65:0:0:65:2279:-205.368,-19.567,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:37:0,37:0:0:37:1310:-118.2,-11.1381,0	0/1:137:110,27:110:3897:27:959:-45.3843,0,-308.13	0/0:236:219,17:219:7758:17:612:0,-15.6296,-640.331	1/1:76:0,76:0:0:76:2703:-243.499,-22.8783,0	1/1:84:0,84:0:0:84:3005:-270.68,-25.2865,0	0/1:234:209,25:209:7404:25:884:-9.43668,0,-594.362	1/1:79:1,78:1:36:78:2792:-247.921,-20.1831,0	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.6897	1/1:46:2,44:2:72:44:1576:-135.324,-7.03959,0	1/1:11:0,11:0:0:11:383:-34.8032,-3.31133,0	0/1:24:19,5:19:676:5:180:-9.32734,0,-53.7162	0/1:306:277,29:277:9809:29:1044:-2.15963,0,-789.17	0/1:56:41,15:41:1468:15:540:-32.0789,0,-115.529	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.0469	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:28:0,28:0:0:28:978:-88.3144,-8.42884,0	0/1:225:180,45:180:6399:45:1585:-75.2044,0,-507.271	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9688	0/1:366:317,49:317:11202:49:1746:-47.2458,0,-897.099	1/1:66:5,61:5:180:61:2167:-178.748,-3.32061,0	0/1:141:120,21:120:4269:21:752:-25.561,0,-341.28	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/0:311:288,23:288:10221:23:828:0,-18.7762,-844.215	1/1:51:2,49:2:72:49:1741:-150.146,-8.5255,0	0/1:46:31,15:31:1079:15:525:-33.7307,0,-83.2356	1/1:25:2,23:2:72:23:810:-66.3948,-0.703491,0	1/1:35:0,35:0:0:35:1235:-111.451,-10.5361,0	0/0:40:38,2:38:1324:2:72:0,-5.20448,-112.463	1/1:56:0,56:0:0:56:1981:-178.563,-16.8577,0	1/1:62:0,62:0:0:62:2192:-197.544,-18.6639,0	1/1:56:0,56:0:0:56:1996:-179.913,-16.8577,0	0/0:380:344,35:344:12251:35:1260:0,-0.744705,-987.21	1/1:58:0,58:0:0:58:2057:-185.399,-17.4597,0	0/0:210:199,11:199:7020:11:384:0,-28.3216,-594.614	0/1:14:10,4:10:356:4:129:-7.71324,0,-27.9525	0/0:261:238,23:238:8477:23:828:0,-3.72471,-687.037	1/1:46:1,45:1:36:45:1620:-142.492,-10.2491,0	1/1:74:1,73:1:32:73:2616:-232.488,-19.0769,0	0/1:141:120,21:120:4253:21:739:-24.3871,0,-339.993	1/1:48:1,47:1:36:47:1662:-146.27,-10.8563,0	1/1:31:0,30:0:0:30:1080:-97.1534,-9.0309,0	0/1:194:147,47:147:5186:47:1684:-93.4472,0,-407.67	1/1:10:0,10:0:0:10:344:-31.2908,-3.0103,0	0/1:139:106,33:106:3712:33:1184:-65.0251,0,-291.282	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:137:103,34:103:3629:34:1216:-68.5055,0,-284.904	0/1:150:130,20:130:4632:20:712:-19.2522,0,-371.483	1/1:80:1,79:1:36:79:2775:-246.391,-20.4841,0	1/1:79:1,78:1:36:78:2795:-248.191,-20.1831,0
chr11	10325917	.	G	T	11766.5	PASS	AB=0.475129;ABP=16.5118;AC=41;AF=0.218085;AN=188;AO=1204;CIGAR=1X;DP=5611;DPB=5611;DPRA=1.1347;EPP=2617.46;EPPR=9537.98;GTI=3;LEN=1;MEANALT=1;MQM=29.5656;MQMR=42.7722;NS=94;NUMALT=1;ODDS=1.05878;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=43111;QR=157781;RO=4407;RPL=0;RPP=2617.46;RPPR=9537.98;RPR=1204;RUN=1;SAF=0;SAP=2617.46;SAR=1204;SRF=0;SRP=9572.69;SRR=4407;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:892:0:0:0,-7.52575,-78.5794	0/1:38:17,21:17:608:21:756:-38.977,0,-42.0685	0/0:83:83,0:83:2984:0:0:0,-24.9855,-259.294	0/1:89:45,44:45:1616:44:1561:-85.6258,0,-115.657	0/0:33:33,0:33:1176:0:0:0,-9.93399,-101.689	0/0:30:30,0:30:1048:0:0:0,-9.0309,-91.892	0/0:47:47,0:47:1688:0:0:0,-14.1484,-149.491	0/0:93:93,0:93:3328:0:0:0,-27.9958,-289.907	0/1:83:43,40:43:1539:40:1428:-72.0045,0,-109.524	0/0:53:53,0:53:1900:0:0:0,-15.9546,-167.55	0/0:42:42,0:42:1512:0:0:0,-12.6433,-134.003	0/1:89:51,38:51:1836:38:1364:-65.0189,0,-133.558	0/1:67:32,35:32:1148:35:1260:-67.0458,0,-80.7363	0/0:46:46,0:46:1648:0:0:0,-13.8474,-143.252	0/1:55:29,26:29:1040:26:936:-52.2451,0,-74.5024	0/0:58:58,0:58:2080:0:0:0,-17.4597,-180.871	0/0:26:26,0:26:913:0:0:0,-7.82678,-79.569	0/1:19:10,9:10:356:9:324:-16.7173,0,-25.8419	0/1:16:8,8:8:288:8:288:-15.1578,0,-20.5185	0/1:98:55,43:55:1957:43:1548:-83.5015,0,-143.184	0/0:104:104,0:104:3740:0:0:0,-31.3071,-326.389	0/1:64:15,49:15:527:49:1737:-113.046,0,-28.0092	0/1:45:29,16:29:1036:16:564:-28.3016,0,-78.4447	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.63422	0/0:55:55,0:55:1980:0:0:0,-16.5566,-171.408	0/1:122:78,44:78:2787:44:1572:-81.1753,0,-210.811	0/0:165:165,0:165:5909:0:0:0,-49.6699,-512.824	0/0:32:32,0:32:1148:0:0:0,-9.63296,-100.124	0/0:186:186,0:186:6648:0:0:0,-55.9916,-590.657	0/1:85:48,37:48:1716:37:1328:-64.9028,0,-123.834	0/0:44:44,0:44:1572:0:0:0,-13.2453,-138.731	1/1:1:0,1:0:0:1:36:-2.7362,-0.30103,0	0/0:25:25,0:25:892:0:0:0,-7.52575,-77.623	0/0:7:7,0:7:248:0:0:0,-2.10721,-21.6587	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.96	0/0:22:22,0:22:792:0:0:0,-6.62266,-68.3819	0/1:159:82,77:82:2929:77:2768:-162.754,0,-210.616	0/1:72:36,36:36:1284:36:1281:-66.6073,0,-89.7418	0/0:54:54,0:54:1936:0:0:0,-16.2556,-169.706	0/1:4:3,1:3:108:1:21:-0.844769,0,-8.54183	0/0:72:72,0:72:2566:0:0:0,-21.6742,-223.774	0/0:28:28,0:28:1000:0:0:0,-8.42884,-86.8553	0/0:95:94,1:94:3364:1:36:0,-25.8616,-289.347	0/0:53:53,0:53:1904:0:0:0,-15.9546,-167.59	0/0:49:49,0:49:1764:0:0:0,-14.7505,-154.019	0/1:121:58,63:58:2072:63:2264:-136.796,0,-145.672	0/1:73:39,34:39:1385:34:1224:-61.6987,0,-99.8264	0/0:100:100,0:100:3579:0:0:0,-30.103,-315.707	0/0:48:48,0:48:1719:0:0:0,-14.4494,-152.139	0/1:98:48,50:48:1728:50:1780:-100.773,0,-122.858	0/0:60:60,0:60:2148:0:0:0,-18.0618,-190.07	0/1:22:10,12:10:352:12:417:-24.0906,0,-24.748	0/0:64:64,0:64:2296:0:0:0,-19.2659,-200.891	0/0:36:36,0:36:1288:0:0:0,-10.8371,-113.094	0/1:9:3,6:3:108:6:201:-10.8037,0,-7.09829	0/1:91:57,34:57:2040:34:1224:-55.6672,0,-147.84	0/1:8:5,3:5:180:3:108:-5.7195,0,-13.8923	0/1:7:6,1:6:216:1:36:-0.947328,0,-17.4652	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.423	0/0:31:30,1:30:1076:1:36:0,-6.59573,-90.6829	0/1:87:48,39:48:1707:39:1400:-72.8373,0,-124.977	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.71863	0/1:150:78,72:78:2804:72:2580:-150.54,0,-203.932	0/0:98:97,1:97:3480:1:36:0,-26.5982,-304.42	0/1:36:25,11:25:896:11:396:-16.1952,0,-67.6009	0/0:54:53,1:53:1896:1:36:0,-13.3529,-164.284	0/1:96:48,48:48:1711:48:1728:-94.5765,0,-121.978	0/0:100:100,0:100:3565:0:0:0,-30.103,-314.641	0/1:31:17,14:17:612:14:504:-25.1735,0,-44.3387	0/0:11:11,0:11:396:0:0:0,-3.31133,-34.8408	0/0:41:41,0:41:1461:0:0:0,-12.3422,-130.165	0/1:18:2,16:2:72:16:576:-36.5206,0,-1.24744	0/0:115:115,0:115:4104:0:0:0,-34.6184,-356.55	0/0:59:57,2:57:2052:2:72:0,-12.562,-174.878	0/0:89:89,0:89:3188:0:0:0,-26.7917,-276.767	0/1:88:54,34:54:1940:34:1220:-62.37,0,-144.638	0/0:65:65,0:65:2328:0:0:0,-19.5669,-202.61	0/1:83:40,43:40:1417:43:1544:-81.6521,0,-99.1339	0/1:12:7,5:7:252:5:180:-8.97417,0,-18.8384	0/1:62:26,36:26:936:36:1296:-70.2627,0,-62.5557	0/0:72:69,3:69:2471:3:108:0,-15.0772,-209.654	0/0:100:100,0:100:3573:0:0:0,-30.103,-313.252	0/1:37:20,17:20:712:17:612:-33.7849,0,-52.1117	0/0:67:67,0:67:2395:0:0:0,-20.169,-211.209	0/0:42:42,0:42:1512:0:0:0,-12.6433,-133.26	0/1:99:54,45:54:1935:45:1601:-86.2516,0,-141.595	0/0:15:15,0:15:536:0:0:0,-4.51545,-47.2785	0/1:64:33,31:33:1188:31:1116:-57.3977,0,-85.1628	0/0:46:46,0:46:1656:0:0:0,-13.8474,-144.437	0/0:38:38,0:38:1368:0:0:0,-11.4391,-119.432	0/1:59:36,23:36:1296:23:820:-39.0047,0,-94.9798	0/1:57:24,33:24:864:33:1188:-68.5916,0,-58.6007	0/0:124:124,0:124:4456:0:0:0,-37.3277,-390.896	0/0:80:80,0:80:2872:0:0:0,-24.0824,-253.96
chr11	10394814	.	C	T	72122.8	PASS	AB=0.495394;ABP=3.37036;AC=148;AF=0.787234;AN=188;AO=3384;CIGAR=1X;DP=4380;DPB=4380;DPRA=0;EPP=7307.91;EPPR=2137.65;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9235;MQMR=59.9688;NS=94;NUMALT=1;ODDS=1.91355;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=120924;QR=35293;RO=995;RPL=0;RPP=7351.27;RPPR=2163.63;RPR=3384;RUN=1;SAF=5;SAP=7307.91;SAR=3379;SRF=3;SRP=2137.65;SRR=992;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:39:12,27:12:411:27:944:-73.5309,0,-25.5777	1/1:74:0,74:0:0:74:2642:-237.985,-22.2762,0	0/1:48:34,14:34:1207:14:504:-31.2487,0,-94.4858	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:37:0,37:0:0:37:1297:-117.024,-11.1381,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:58:36,22:36:1260:22:780:-53.0528,0,-96.2399	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:44:0,44:0:0:44:1572:-141.743,-13.2453,0	0/1:74:38,36:38:1348:36:1292:-94.2929,0,-99.344	0/1:44:17,27:17:595:27:964:-73.8315,0,-40.6314	1/1:61:2,59:2:72:59:2099:-182.342,-11.5261,0	0/1:36:15,21:15:527:21:744:-56.4466,0,-36.9231	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:22:0,22:0:0:22:792:-71.6053,-6.62266,0	0/1:22:9,13:9:316:13:468:-35.837,0,-22.1562	0/1:28:14,14:14:491:14:500:-36.9073,0,-36.0923	0/1:75:44,31:44:1562:31:1112:-77.8137,0,-118.293	1/1:73:0,73:0:0:73:2609:-235.057,-21.9752,0	0/1:68:48,20:48:1728:20:712:-43.9284,0,-135.335	0/1:41:22,19:22:788:19:680:-49.1869,0,-58.9026	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:39:0,39:0:0:39:1388:-125.211,-11.7402,0	0/1:148:70,78:70:2494:78:2775:-205.438,0,-180.155	1/1:115:0,115:0:0:115:4116:-370.62,-34.6185,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:133:0,133:0:0:133:4768:-429.19,-40.037,0	0/1:57:27,30:27:964:30:1068:-79.2734,0,-69.9181	1/1:40:0,40:0:0:40:1432:-129.177,-12.0412,0	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:107:47,60:47:1664:60:2144:-161.018,0,-117.837	0/1:65:31,34:31:1116:34:1224:-90.9001,0,-81.1847	1/1:31:0,31:0:0:31:1103:-99.5794,-9.33193,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:42:0,42:0:0:42:1503:-135.564,-12.6433,0	1/1:69:0,69:0:0:69:2461:-221.743,-20.7711,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	0/1:80:41,39:41:1468:39:1400:-102.217,0,-108.334	0/1:44:25,19:25:900:19:676:-47.9155,0,-68.0757	1/1:81:0,81:0:0:81:2904:-261.594,-24.3834,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:72:27,45:27:960:45:1607:-123.238,0,-65.0421	1/1:54:0,53:0:0:53:1904:-171.317,-15.9546,0	0/1:12:10,2:10:352:2:72:-3.22436,0,-28.4058	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:37:0,37:0:0:37:1292:-116.578,-11.1381,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:70:31,39:31:1099:39:1387:-104.056,0,-78.1437	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:6:0,6:0:0:6:215:-19.628,-1.80618,0	1/1:49:1,48:1:36:48:1720:-151.442,-11.1522,0	0/1:78:35,43:35:1230:43:1540:-115.413,0,-87.5221	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:77:35,42:35:1243:42:1512:-113.195,0,-88.9946	1/1:80:0,80:0:0:80:2850:-256.707,-24.0824,0	0/1:39:10,29:10:360:29:1040:-82.1742,0,-21.0041	1/1:41:0,41:0:0:41:1468:-132.391,-12.3422,0	0/1:69:41,28:41:1444:28:1008:-70.2653,0,-109.482	1/1:75:1,74:1:36:74:2654:-235.507,-18.979,0	0/1:30:11,19:11:396:19:675:-52.0461,0,-26.9518	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	1/1:63:0,63:0:0:63:2264:-204.021,-18.9649,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:113:0,113:0:0:113:4024:-362.343,-34.0164,0	0/1:67:41,26:41:1441:26:932:-64.0299,0,-109.815	1/1:59:3,56:3:93:56:2008:-172.316,-9.08404,0	0/1:43:26,17:26:919:17:608:-42.1054,0,-70.0819	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	0/1:35:17,18:17:608:18:648:-48.1158,0,-44.516	1/1:54:1,53:1:36:53:1864:-164.437,-12.6573,0	1/1:78:0,78:0:0:78:2781:-250.53,-23.4803,0	0/1:30:13,17:13:459:17:612:-46.3825,0,-32.6132	1/1:43:1,42:1:36:42:1506:-132.236,-9.34602,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:58:28,30:28:996:30:1064:-78.6119,0,-72.4896	1/1:18:0,18:0:0:18:638:-57.7484,-5.41854,0	0/1:46:28,18:28:971:18:648:-44.8045,0,-73.8537	1/1:44:0,44:0:0:44:1558:-140.51,-13.2453,0	1/1:49:0,49:0:0:49:1745:-157.332,-14.7505,0	0/1:85:46,39:46:1632:39:1400:-100.712,0,-121.581	0/1:31:21,10:21:743:10:351:-22.5947,0,-57.8568	1/1:67:0,67:0:0:67:2408:-216.972,-20.169,0	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0
chr11	10394853	.	CCA	CCC,TCC	93682.6	PASS	AB=0.495385,0.500513;ABP=3.3711,3.01475;AC=148,40;AF=0.787234,0.212766;AN=188;AO=3357,982;CIGAR=2M1X,1X1M1X;DP=4349;DPB=4351;DPRA=0,1.13638;EPP=7292.64,2135.4;EPPR=0;GTI=0;LEN=1,3;MEANALT=1.54255,2.13953;MQM=59.927,59.9603;MQMR=0;NS=94;NUMALT=2;ODDS=1.97743;PAIRED=0,0;PAIREDR=0;PAO=1,4;PQA=0,144;PQR=0;PRO=1;QA=119983,34736;QR=0;RO=0;RPL=3357,982;RPP=7292.64,2135.4;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=7292.64,2135.4;SAR=3357,982;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:39:0,26,13:0:0:26,13:932,459:-113.748,-37.7312,-29.9044,-76.3712,0,-72.4578	1/1:73:0,72,0:0:0:72,0:2565,0:-230.684,-21.6742,0,-230.684,-21.6742,-230.684	1/2:50:0,16,34:0:0:16,34:572,1207:-145.341,-98.7007,-93.8842,-46.9969,0,-36.7619	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:36:0,36,0:0:0:36,0:1273,0:-114.868,-10.8371,0,-114.868,-10.8371,-114.868	1/1:64:0,64,0:0:0:64,0:2281,0:-205.55,-19.2659,0,-205.55,-19.2659,-205.55	1/2:57:0,20,35:0:0:20,35:716,1237:-159.128,-100.738,-94.7174,-58.3871,0,-47.8511	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/1:45:0,45,0:0:0:45,0:1597,0:-143.99,-13.5464,0,-143.99,-13.5464,-143.99	1/2:74:0,36,38:0:0:36,38:1284,1341:-214.206,-109.549,-98.7115,-105.012,0,-93.5725	1/2:41:0,24,17:0:0:24,17:864,597:-119.443,-48.9401,-41.7153,-70.8578,0,-65.7403	1/1:61:0,61,0:0:0:61,0:2180,0:-196.466,-18.3628,0,-196.466,-18.3628,-196.466	1/2:36:0,21,15:0:0:21,15:748,527:-104.214,-43.2439,-36.9223,-61.3237,0,-56.8082	1/1:29:0,29,0:0:0:29,0:1031,0:-93.1026,-8.72987,0,-93.1026,-8.72987,-93.1026	1/1:22:0,22,0:0:0:22,0:788,0:-71.2444,-6.62266,0,-71.2444,-6.62266,-71.2444	1/2:22:0,13,9:0:0:13,9:468,317:-64.3515,-26.1605,-22.2471,-38.5463,0,-35.837	1/2:27:0,14,13:0:0:14,13:495,457:-77.5059,-37.19,-32.9756,-40.3092,0,-36.3958	1/2:73:0,31,42:0:0:31,42:1116,1499:-213.263,-122.202,-112.87,-91.0599,0,-78.4167	1/1:75:0,75,0:0:0:75,0:2696,0:-242.87,-22.5773,0,-242.87,-22.5773,-242.87	1/2:65:0,21,44:0:0:21,44:756,1566:-189.665,-127.986,-121.664,-62.0374,0,-48.7921	1/2:43:0,20,23:0:0:20,23:720,806:-124.688,-65.9355,-59.9149,-59.1082,0,-52.1845	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:41:0,41,0:0:0:41,0:1468,0:-132.396,-12.3422,0,-132.396,-12.3422,-132.396	1/2:147:0,75,71:0:0:75,71:2680,2504:-422.305,-203.793,-181.216,-218.507,0,-197.134	1/1:111:0,111,0:0:0:111,0:3969,0:-357.371,-33.4143,0,-357.371,-33.4143,-357.371	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/1:132:0,132,0:0:0:132,0:4695,0:-422.622,-39.736,0,-422.622,-39.736,-422.622	1/2:58:0,31,27:0:0:31,27:1116,965:-170.1,-79.0391,-69.7072,-91.4198,0,-83.292	1/1:38:0,38,0:0:0:38,0:1326,0:-119.636,-11.4391,0,-119.636,-11.4391,-119.636	1/2:18:0,12,6:0:0:12,6:432,214:-53.0528,-17.8016,-14.1892,-35.6088,0,-33.8027	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:8:0,8,0:0:0:8,0:280,0:-25.5393,-2.40824,0,-25.5393,-2.40824,-25.5393	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/2:106:0,57,49:0:0:57,49:2048,1718:-307.232,-140.153,-122.995,-167.433,0,-152.682	1/2:65:0,33,32:0:0:33,32:1161,1124:-186.342,-91.833,-81.899,-94.8607,0,-85.2278	1/1:30:0,30,0:0:0:30,0:1076,0:-97.1525,-9.0309,0,-97.1525,-9.0309,-97.1525	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:34:0,34,0:0:0:34,0:1205,0:-108.754,-10.235,0,-108.754,-10.235,-108.754	1/1:43:0,43,0:0:0:43,0:1540,0:-138.893,-12.9443,0,-138.893,-12.9443,-138.893	1/1:66:0,66,0:0:0:66,0:2376,0:-214.097,-19.868,0,-214.097,-19.868,-214.097	1/1:14:0,14,0:0:0:14,0:496,0:-44.9743,-4.21442,0,-44.9743,-4.21442,-44.9743	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/2:78:0,38,40:0:0:38,40:1364,1410:-226.421,-115.155,-103.716,-111.622,0,-99.5804	1/2:45:0,20,25:0:0:20,25:716,900:-132.166,-73.7953,-67.7747,-58.7295,0,-51.2037	1/1:80:0,79,0:0:0:79,0:2836,0:-255.117,-23.7814,0,-255.117,-23.7814,-255.117	1/1:45:0,45,0:0:0:45,0:1612,0:-145.37,-13.5464,0,-145.37,-13.5464,-145.37	1/2:74:0,46,28:0:0:46,28:1637,999:-215.202,-81.7968,-67.9494,-133.761,0,-125.332	1/1:52:0,52,0:0:0:52,0:1864,0:-168.039,-15.6536,0,-168.039,-15.6536,-168.039	1/2:11:0,2,9:0:0:2,9:72,324:-32.6714,-26.7966,-26.1945,-6.23466,0,-3.52539	1/1:67:0,67,0:0:0:67,0:2408,0:-216.976,-20.169,0,-216.976,-20.169,-216.976	1/1:37:0,37,0:0:0:37,0:1324,0:-119.462,-11.1381,0,-119.462,-11.1381,-119.462	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/2:66:0,37,25:0:0:37,25:1308,884:-178.519,-71.9898,-60.8516,-106.524,0,-98.9982	1/2:9:0,4,5:0:0:4,5:144,165:-25.4314,-13.6685,-12.4643,-12.1095,0,-10.6043	1/2:8:0,5,3:0:0:5,3:180,108:-23.8592,-9.17208,-7.66693,-15.0469,0,-14.1438	1/1:5: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chr11	10490733	.	A	G	234235	PASS	AB=0.512027;ABP=9.22623;AC=148;AF=0.787234;AN=188;AO=8702;CIGAR=1X;DP=11123;DPB=11123;DPRA=0;EPP=17243.4;EPPR=5047.24;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9594;MQMR=59.9801;NS=94;NUMALT=1;ODDS=2.70688;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=306991;QR=85641;RO=2418;RPL=2983;RPP=1870.97;RPPR=423.166;RPR=5719;RUN=1;SAF=2788;SAP=2441.46;SAR=5914;SRF=845;SRP=478.96;SRR=1573;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1398:-126.114,-12.0412,0	0/1:61:20,41:20:711:41:1438:-111.348,0,-45.9446	1/1:88:0,88:0:0:88:3124:-281.388,-26.4906,0	0/1:236:120,116:120:4254:116:4096:-297.772,0,-311.999	1/1:114:0,114:0:0:114:4053:-364.957,-34.3174,0	1/1:76:0,76:0:0:76:2683:-241.714,-22.8783,0	1/1:147:0,147:0:0:147:5207:-468.774,-44.2514,0	1/1:182:0,182:0:0:182:6426:-578.312,-54.7875,0	0/1:77:46,31:46:1609:31:1077:-74.0567,0,-121.904	1/1:161:0,160:0:0:160:5662:-509.342,-48.1648,0	1/1:115:0,115:0:0:115:4032:-363.071,-34.6185,0	0/1:73:40,33:40:1432:33:1150:-81.8226,0,-107.072	0/1:73:28,45:28:1004:45:1569:-119.523,0,-68.7007	1/1:129:0,129:0:0:129:4494:-404.633,-38.8329,0	0/1:121:57,64:57:2005:64:2275:-168.587,0,-144.297	1/1:92:0,92:0:0:92:3266:-294.16,-27.6948,0	1/1:82:0,82:0:0:82:2867:-258.266,-24.6845,0	0/1:53:19,34:19:671:34:1198:-92.1694,0,-44.7612	0/1:33:19,14:19:659:14:504:-35.7641,0,-49.6983	0/1:184:97,87:97:3445:87:3067:-220.872,0,-254.874	1/1:156:0,156:0:0:156:5515:-496.481,-46.9607,0	0/1:95:68,27:68:2405:27:919:-54.4179,0,-188.108	0/1:146:82,64:82:2890:64:2287:-162.141,0,-216.385	1/1:165:0,165:0:0:165:5778:-520.142,-49.67,0	1/1:89:0,89:0:0:89:3180:-286.425,-26.7917,0	0/1:421:218,203:218:7733:203:7158:-517.551,0,-569.277	1/1:217:0,217:0:0:217:7696:-692.528,-65.3235,0	1/1:61:0,61:0:0:61:2136:-192.507,-18.3628,0	1/1:240:0,240:0:0:240:8444:-759.939,-72.2472,0	0/1:232:114,118:114:4047:118:4189:-307.354,0,-294.581	1/1:140:0,140:0:0:140:4960:-446.553,-42.1442,0	0/1:8:2,6:2:63:6:207:-16.5587,0,-3.57491	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:309:147,162:147:5179:162:5701:-420.196,0,-373.235	0/1:192:99,93:99:3504:93:3303:-239.691,0,-257.774	1/1:61:0,61:0:0:61:2122:-191.247,-18.3628,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:195:0,195:0:0:195:6940:-624.672,-58.7009,0	1/1:55:0,55:0:0:55:1956:-176.088,-16.5567,0	1/1:213:0,212:0:0:212:7481:-672.976,-63.8184,0	1/1:128:0,128:0:0:128:4481:-403.394,-38.5318,0	1/1:113:0,113:0:0:113:3967:-357.225,-34.0164,0	0/1:135:57,78:57:2017:78:2728:-205.122,0,-141.162	0/1:98:57,41:57:1993:41:1437:-100.123,0,-150.142	1/1:240:0,240:0:0:240:8509:-765.81,-72.2472,0	1/1:101:0,101:0:0:101:3597:-323.936,-30.404,0	0/1:165:71,94:71:2511:94:3297:-247.279,0,-176.573	1/1:155:0,155:0:0:155:5508:-495.691,-46.6597,0	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	1/1:77:0,77:0:0:77:2739:-246.753,-23.1793,0	1/1:53:0,53:0:0:53:1869:-168.487,-15.9546,0	0/1:11:7,4:7:248:4:135:-9.17118,0,-19.3529	0/1:193:84,109:84:2979:109:3819:-285.81,0,-210.245	0/1:81:30,51:30:1072:51:1801:-137.987,0,-72.409	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:135:2,133:2:72:133:4688:-415.245,-33.8023,0	0/1:171:90,81:90:3196:81:2850:-205.257,0,-236.389	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:258:94,164:94:3326:164:5789:-443.462,0,-221.894	1/1:285:2,283:2:72:283:9978:-891.126,-78.9568,0	0/1:93:41,52:41:1443:52:1797:-134.011,0,-102.169	1/1:96:0,96:0:0:96:3399:-306.089,-28.8989,0	0/1:184:88,96:88:3102:96:3389:-249.835,0,-224.017	1/1:109:0,109:0:0:109:3861:-347.686,-32.8123,0	0/1:54:26,28:26:923:28:1000:-74.0598,0,-67.1311	1/1:85:0,85:0:0:85:3000:-270.233,-25.5876,0	1/1:149:0,149:0:0:149:5286:-475.88,-44.8535,0	0/1:21:8,13:8:284:13:468:-36.138,0,-19.5817	1/1:81:0,81:0:0:81:2815:-253.591,-24.3834,0	1/1:57:0,57:0:0:57:2003:-180.541,-17.1587,0	1/1:253:0,253:0:0:253:8979:-806.732,-76.1606,0	0/1:177:78,99:78:2759:99:3501:-262.018,0,-195.268	1/1:129:0,128:0:0:128:4526:-407.15,-38.5318,0	0/1:119:61,58:61:2160:58:2044:-148.407,0,-158.842	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/1:100:51,49:51:1816:49:1731:-125.971,0,-133.618	1/1:62:0,62:0:0:62:2143:-193.134,-18.6639,0	1/1:251:0,251:0:0:251:8883:-799.457,-75.5585,0	0/1:133:68,65:68:2403:65:2290:-166.322,0,-176.49	1/1:113:0,113:0:0:113:3952:-355.873,-34.0164,0	1/1:125:0,125:0:0:125:4378:-394.194,-37.6288,0	0/1:262:117,145:117:4175:145:5118:-381.897,0,-297.061	1/1:57:0,57:0:0:57:1984:-178.831,-17.1587,0	0/1:98:45,53:45:1572:53:1870:-139.073,0,-112.27	1/1:76:0,76:0:0:76:2684:-241.804,-22.8783,0	1/1:70:0,70:0:0:70:2485:-223.902,-21.0721,0	0/1:126:61,65:61:2192:65:2274:-166.989,0,-159.616	0/1:134:90,44:90:3219:44:1568:-101.072,0,-249.594	1/1:186:0,186:0:0:186:6555:-590.039,-55.9916,0	1/1:139:0,139:0:0:139:4875:-438.91,-41.8432,0
chr11	10648603	.	A	G	22772.1	PASS	AB=0.48727;ABP=6.99082;AC=37;AF=0.198925;AN=186;AO=1388;CIGAR=1X;DP=6503;DPB=6503;DPRA=1.27515;EPP=3017.01;EPPR=11105.7;GTI=0;LEN=1;MEANALT=1.02381;MQM=59.8775;MQMR=59.9732;NS=93;NUMALT=1;ODDS=1.02575;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49503;QR=182678;RO=5113;RPL=1388;RPP=3017.01;RPPR=11105.7;RPR=0;RUN=1;SAF=0;SAP=3017.01;SAR=1388;SRF=0;SRP=11105.7;SRR=5113;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:137:75,62:75:2664:62:2224:-159.166,0,-198.763	0/0:114:114,0:114:4079:0:0:0,-34.3174,-367.226	0/1:109:51,58:51:1815:58:2072:-153.938,0,-130.818	0/0:67:66,0:66:2355:0:0:0,-19.868,-211.82	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/0:111:111,0:111:3988:0:0:0,-33.4143,-359.106	0/1:64:40,24:40:1432:24:848:-57.3706,0,-109.912	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:35:18,17:18:635:17:612:-44.8774,0,-46.9409	0/1:48:25,23:25:900:23:828:-60.3947,0,-66.8716	0/0:79:79,0:79:2805:0:0:0,-23.7814,-252.689	0/1:24:8,16:8:288:16:568:-44.2271,0,-19.0427	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:41:20,21:20:716:21:743:-54.8496,0,-52.4255	0/1:40:21,19:21:747:19:676:-49.1268,0,-55.5131	0/1:145:75,70:75:2688:70:2505:-181.945,0,-198.515	0/0:102:101,1:101:3603:1:36:0,-27.1068,-320.878	0/1:106:38,68:38:1352:68:2432:-187.226,0,-90.0712	0/1:88:41,47:41:1457:47:1679:-124.906,0,-104.933	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:148:90,58:90:3220:58:2050:-140.218,0,-245.47	0/0:98:98,0:98:3485:0:0:0,-29.5009,-313.843	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:142:142,0:142:5080:0:0:0,-42.7463,-457.345	0/1:149:84,65:84:3012:65:2323:-164.475,0,-226.457	0/0:92:92,0:92:3276:0:0:0,-27.6948,-295.059	.:.:.:.:.:.:.:.	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:113:62,51:62:2208:51:1822:-130.227,0,-164.969	0/1:137:63,74:63:2264:74:2644:-196.943,0,-162.779	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/0:108:108,0:108:3842:0:0:0,-32.5112,-345.977	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:49:49,0:49:1746:0:0:0,-14.7505,-157.423	0/1:84:45,39:45:1590:39:1400:-101.013,0,-118.102	0/1:85:38,47:38:1360:47:1671:-125.043,0,-97.113	0/0:116:115,1:115:4109:1:36:0,-31.3212,-366.396	0/0:109:109,0:109:3893:0:0:0,-32.8123,-350.563	0/1:104:42,62:42:1500:62:2190:-166.055,0,-103.987	0/0:112:112,0:112:3996:0:0:0,-33.7154,-359.831	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:120:120,0:120:4283:0:0:0,-36.1236,-385.509	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	0/1:102:47,55:47:1680:55:1956:-145.61,0,-120.782	0/1:35:21,14:21:756:14:496:-34.4382,0,-57.8312	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/1:101:52,49:52:1872:49:1747:-127.109,0,-138.355	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:143:75,68:75:2696:68:2413:-174.363,0,-199.705	0/0:149:146,3:146:5236:3:108:0,-34.7783,-461.301	0/1:64:37,27:37:1324:27:968:-68.0643,0,-100.196	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/1:106:66,40:66:2346:40:1432:-97.2684,0,-179.487	0/0:110:110,0:110:3913:0:0:0,-33.1133,-352.361	0/1:18:10,7:10:356:7:252:-17.5516,0,-26.9043	0/0:57:57,0:57:2008:0:0:0,-17.1587,-180.99	0/0:61:61,0:61:2167:0:0:0,-18.3628,-195.296	0/1:13:8,5:8:280:5:176:-12.2716,0,-21.6259	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:156:156,0:156:5584:0:0:0,-46.9607,-502.683	0/1:107:49,58:49:1760:58:2072:-154.512,0,-126.474	0/0:85:82,3:82:2936:3:108:0,-15.5124,-254.399	0/1:55:28,27:28:1004:27:964:-70.5186,0,-74.1192	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:79:39,40:39:1392:40:1417:-104.044,0,-101.798	0/0:51:49,2:49:1760:2:72:0,-8.51581,-151.847	0/0:154:154,0:154:5499:0:0:0,-46.3586,-495.038	0/1:78:41,37:41:1459:37:1320:-95.6216,0,-108.125	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.585	0/0:66:66,0:66:2321:0:0:0,-19.868,-209.15	0/1:104:59,45:59:2116:45:1608:-113.7,0,-159.402	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.653	0/1:63:33,30:33:1175:30:1072:-77.8276,0,-87.0921	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:54:29,25:29:1044:25:900:-65.065,0,-78.0192	0/1:34:13,21:13:459:21:743:-56.9583,0,-31.4088	0/0:89:89,0:89:3179:0:0:0,-26.7917,-286.334	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162
chr11	10996759	.	A	G	96896.8	PASS	AB=0.530097;ABP=23.2703;AC=148;AF=0.787234;AN=188;AO=4895;CIGAR=1X;DP=6113;DPB=6113;DPRA=0;EPP=10632.4;EPPR=2632.67;GTI=0;LEN=1;MEANALT=1.03191;MQM=39.8697;MQMR=55.721;NS=94;NUMALT=1;ODDS=0.338363;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173373;QR=43268;RO=1215;RPL=0;RPP=10632.4;RPPR=2641.35;RPR=4895;RUN=1;SAF=0;SAP=10632.4;SAR=4895;SRF=1;SRP=2632.67;SRR=1214;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62:0:0:62:2215:-192.82,-18.6639,0	0/1:62:29,33:29:1040:33:1165:-83.2479,0,-75.1687	1/1:136:0,135:0:0:135:4785:-415.243,-40.6391,0	0/1:95:47,48:47:1660:48:1728:-118.537,0,-120.092	1/1:34:0,34:0:0:34:1190:-103.357,-10.235,0	1/1:34:0,34:0:0:34:1207:-104.794,-10.235,0	1/1:55:0,54:0:0:54:1915:-165.467,-16.2556,0	1/1:74:0,74:0:0:74:2608:-228.008,-22.2762,0	0/1:55:23,32:23:824:32:1111:-79.7113,0,-57.9068	1/1:62:0,62:0:0:62:2163:-187.502,-18.6639,0	1/1:53:0,53:0:0:53:1838:-158.184,-15.9546,0	0/1:106:43,63:43:1531:63:2251:-164.613,0,-106.136	0/1:72:32,40:32:1132:40:1420:-102.051,0,-80.4867	1/1:54:0,54:0:0:54:1924:-165.839,-16.2556,0	0/1:76:40,36:40:1432:36:1280:-88.1675,0,-106.003	1/1:38:0,38:0:0:38:1353:-116.617,-11.4391,0	1/1:34:0,34:0:0:34:1215:-105.401,-10.235,0	0/1:29:16,13:16:543:13:468:-32.3185,0,-40.4352	0/1:34:17,17:17:612:17:600:-42.1912,0,-45.0399	0/1:106:51,55:51:1799:55:1963:-138.072,0,-129.354	1/1:116:0,116:0:0:116:4073:-352.501,-34.9195,0	0/1:55:32,23:32:1135:23:815:-53.7363,0,-85.7794	0/1:61:27,34:27:963:34:1195:-84.915,0,-68.2257	1/1:47:0,47:0:0:47:1675:-144.987,-14.1484,0	1/1:73:0,73:0:0:73:2590:-224.398,-21.9752,0	0/1:112:59,53:59:2120:53:1884:-127.282,0,-156.77	1/1:186:0,186:0:0:186:6621:-567.665,-55.9916,0	1/1:29:0,29:0:0:29:1036:-89.5544,-8.72987,0	1/1:133:0,133:0:0:133:4768:-406.564,-40.037,0	0/1:79:35,44:35:1239:44:1537:-109.352,0,-87.9783	1/1:77:0,77:0:0:77:2690:-232.301,-23.1793,0	0/1:5:3,2:3:104:2:72:-5.05838,0,-8.19383	1/1:14:0,14:0:0:14:492:-42.8689,-4.21442,0	1/1:3:0,3:0:0:3:104:-9.43593,-0.90309,0	1/1:4:0,4:0:0:4:144:-12.8786,-1.20412,0	1/1:12:0,12:0:0:12:428:-37.4336,-3.61236,0	0/1:170:79,91:79:2819:91:3234:-225.098,0,-202.163	0/1:80:36,44:36:1292:44:1562:-111.425,0,-92.3791	1/1:51:0,51:0:0:51:1796:-154.216,-15.3525,0	1/1:5:0,5:0:0:5:180:-15.8907,-1.50515,0	1/1:102:0,102:0:0:102:3618:-312.453,-30.7051,0	1/1:31:0,31:0:0:31:1112:-95.7764,-9.33193,0	1/1:87:0,87:0:0:87:3096:-266.37,-26.1896,0	1/1:56:0,56:0:0:56:1986:-169.442,-16.8577,0	1/1:58:0,58:0:0:58:2067:-178.397,-17.4597,0	0/1:109:41,68:41:1439:68:2420:-171.901,0,-96.657	0/1:92:41,51:41:1476:51:1802:-128.35,0,-105.398	1/1:120:0,120:0:0:120:4205:-363.055,-36.1236,0	1/1:85:0,85:0:0:85:3034:-261.796,-25.5876,0	0/1:52:22,30:22:780:30:1072:-77.388,0,-53.5444	1/1:89:0,89:0:0:89:3168:-269.433,-26.7917,0	0/1:8:5,3:5:180:3:108:-7.26433,0,-14.1319	1/1:135:0,135:0:0:135:4798:-418.547,-40.6391,0	1/1:53:0,53:0:0:53:1889:-161.74,-15.9546,0	0/1:7:5,2:5:180:2:72:-4.50611,0,-14.4402	0/1:91:45,46:45:1582:46:1594:-109.467,0,-115.075	0/1:19:13,6:13:464:6:216:-13.2801,0,-36.3491	0/1:8:7,1:7:252:1:36:-1.01536,0,-20.4903	1/1:7:0,7:0:0:7:252:-21.911,-2.10721,0	1/1:63:0,63:0:0:63:2205:-190.346,-18.9649,0	0/1:96:55,41:55:1959:41:1463:-97.161,0,-147.271	0/1:4:2,2:2:72:2:72:-5.35941,0,-5.62767	0/1:99:41,58:41:1472:58:2051:-145.87,0,-102.635	1/1:120:0,120:0:0:120:4257:-364.982,-36.1236,0	0/1:59:15,44:15:536:44:1554:-116.497,0,-30.7232	1/1:48:0,48:0:0:48:1662:-145.049,-14.4494,0	0/1:73:31,42:31:1093:42:1508:-108.015,0,-76.5697	1/1:95:3,92:3:108:92:3253:-266.715,-18.6159,0	0/1:41:21,20:21:748:20:716:-49.9205,0,-55.2688	1/1:27:0,27:0:0:27:964:-84.3832,-8.12781,0	1/1:42:0,42:0:0:42:1483:-127.895,-12.6433,0	0/1:6:4,2:4:140:2:72:-4.75735,0,-11.1302	1/1:89:0,89:0:0:89:3152:-273.233,-26.7917,0	1/1:66:0,66:0:0:66:2346:-202.893,-19.868,0	1/1:97:0,97:0:0:97:3440:-294.536,-29.1999,0	0/1:88:36,52:36:1292:52:1856:-134.218,0,-90.0102	1/1:76:0,76:0:0:76:2684:-233.754,-22.8783,0	0/1:40:18,22:18:648:22:783:-56.6171,0,-46.5953	0/1:17:3,14:3:108:14:495:-38.292,0,-4.95102	0/1:58:21,37:21:756:37:1293:-95.0524,0,-50.7217	1/1:82:1,80:1:36:80:2845:-244.029,-21.1421,0	1/1:133:0,133:0:0:133:4691:-402.74,-40.037,0	0/1:54:25,29:25:882:29:1032:-71.7862,0,-63.3751	1/1:51:1,50:1:36:50:1790:-151.023,-11.804,0	1/1:42:0,42:0:0:42:1465:-126.699,-12.6433,0	0/1:127:60,67:60:2148:67:2330:-164.076,0,-154.824	1/1:26:0,26:0:0:26:913:-79.2712,-7.82678,0	0/1:77:34,43:34:1207:43:1527:-109.968,0,-85.5288	1/1:78:0,78:0:0:78:2771:-240.913,-23.4803,0	1/1:29:0,29:0:0:29:1035:-89.8069,-8.72987,0	0/1:97:49,48:49:1737:48:1671:-114.198,0,-127.206	0/1:56:47,9:47:1692:9:316:-10.6459,0,-135.517	1/1:71:0,71:0:0:71:2516:-216.135,-21.3731,0	1/1:94:0,94:0:0:94:3322:-287.665,-28.2968,0
chr11	11190637	.	TGA	GGA	151854	PASS	AB=0.520534;ABP=13.9793;AC=138;AF=0.741935;AN=186;AO=5694;CIGAR=1X2M;DP=8068;DPB=8067.67;DPRA=0.818395;EPP=21.8053;EPPR=35.0599;GTI=3;LEN=1;MEANALT=1.26374;MQM=45.8551;MQMR=57.3464;NS=93;NUMALT=1;ODDS=0.0207638;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202409;QR=82882;RO=2344;RPL=2958;RPP=21.8053;RPPR=35.0599;RPR=2736;RUN=1;SAF=0;SAP=12367.4;SAR=5694;SRF=0;SRP=5092.94;SRR=2344;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,80:0:0:80:2830:-249.995,-24.0824,0	0/1:111:57,54:57:2007:54:1915:-135.187,0,-147.231	1/1:77:1,75:1:36:75:2668:-231.316,-19.5958,0	0/1:105:52,53:52:1850:53:1879:-136.033,0,-135.094	1/1:93:1,92:1:36:92:3292:-289.026,-24.3992,0	1/1:45:0,44:0:0:44:1565:-137.82,-13.2453,0	1/1:103:0,102:0:0:102:3624:-322.754,-30.7051,0	1/1:46:0,46:0:0:46:1638:-144.066,-13.8474,0	0/1:93:45,47:45:1579:47:1664:-118.448,0,-114.242	1/1:56:0,56:0:0:56:1991:-177.399,-16.8577,0	1/1:25:0,25:0:0:25:871:-77.7956,-7.52575,0	0/1:43:21,22:21:738:22:779:-56.1153,0,-53.7292	0/1:37:14,23:14:494:23:824:-61.7786,0,-33.545	1/1:47:0,47:0:0:47:1683:-149.498,-14.1484,0	0/1:50:26,24:26:927:24:851:-61.1956,0,-68.5739	1/1:38:0,38:0:0:38:1356:-120.893,-11.4391,0	1/1:43:0,43:0:0:43:1520:-134.186,-12.9443,0	0/1:24:13,11:13:468:11:396:-27.9854,0,-35.1912	0/1:42:33,9:33:1171:9:314:-15.1208,0,-92.5845	0/1:163:69,94:69:2442:94:3315:-246.083,0,-170.917	1/1:155:1,152:1:20:152:5433:-479.193,-44.2955,0	0/1:109:77,32:77:2696:32:1135:-69.0261,0,-210.047	0/1:38:18,20:18:641:20:706:-51.6593,0,-46.5286	1/1:116:0,116:0:0:116:4103:-364.155,-34.9195,0	1/1:58:1,57:1:36:57:2040:-177.52,-13.8632,0	0/1:312:169,140:169:5945:140:4994:-352.796,0,-441.696	1/1:203:0,203:0:0:203:7169:-636.492,-61.1091,0	1/1:34:0,34:0:0:34:1197:-106.421,-10.235,0	1/1:273:3,270:3:77:270:9627:-852.794,-74.9951,0	0/1:61:19,42:19:651:42:1488:-113.856,0,-40.5164	1/1:113:0,113:0:0:113:3991:-356.045,-34.0164,0	0/0:91:90,0:90:3184:0:0:0,-27.0927,-286.238	1/1:9:0,9:0:0:9:320:-28.761,-2.70927,0	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	1/1:3:0,3:0:0:3:108:-9.85882,-0.90309,0	.:.:.:.:.:.:.:.	0/1:150:73,77:73:2598:77:2726:-198.869,0,-188.871	0/1:128:57,70:57:2034:70:2478:-181.894,0,-144.748	1/1:45:2,43:2:72:43:1533:-128.554,-6.71154,0	1/1:3:0,3:0:0:3:108:-9.93584,-0.90309,0	1/1:93:1,92:1:28:92:3262:-286.583,-25.1961,0	1/1:22:0,22:0:0:22:788:-70.028,-6.62266,0	1/1:128:0,127:0:0:127:4528:-401.053,-38.2308,0	1/1:56:0,56:0:0:56:1997:-178.327,-16.8577,0	1/1:44:0,44:0:0:44:1516:-135.389,-13.2453,0	0/1:84:42,42:42:1487:42:1504:-109.674,0,-108.797	0/1:59:27,32:27:966:32:1112:-79.7206,0,-69.4045	1/1:175:0,175:0:0:175:6257:-556.599,-52.6803,0	1/1:138:1,137:1:36:137:4896:-432.786,-37.9439,0	0/1:113:52,61:52:1840:61:2169:-158.362,0,-131.835	1/1:195:1,194:1:28:194:6935:-617.413,-55.9011,0	0/0:100:98,2:98:3453:2:72:0,-23.2962,-303.993	1/1:71:0,70:0:0:70:2468:-217.107,-21.0721,0	1/1:23:0,23:0:0:23:824:-73.764,-6.92369,0	0/0:120:120,0:120:4258:0:0:0,-36.1236,-382.772	0/1:84:44,40:44:1555:40:1417:-99.8992,0,-114.85	0/1:27:16,10:16:563:10:358:-23.851,0,-42.7165	0/0:142:137,5:137:4829:5:180:0,-26.2839,-418.129	1/1:10:1,9:1:28:9:320:-26.1948,-0.210573,0	1/1:53:0,53:0:0:53:1887:-167.823,-15.9546,0	0/1:81:35,46:35:1254:46:1613:-119.503,0,-88.7581	0/0:52:48,4:48:1719:4:144:0,-2.45635,-141.724	0/1:153:36,114:36:1264:114:4053:-317.601,0,-68.5336	1/1:175:2,172:2:60:172:6130:-539.421,-46.9615,0	0/1:82:43,38:43:1523:38:1364:-96.219,0,-112.625	1/1:81:0,81:0:0:81:2866:-255.783,-24.3834,0	0/1:163:59,104:59:2083:104:3689:-279.56,0,-138.461	1/1:74:1,72:1:34:72:2570:-225.346,-18.9248,0	0/0:62:61,1:61:2143:1:32:0,-15.4851,-189.856	1/1:79:0,78:0:0:78:2780:-244.467,-23.4803,0	1/1:57:0,57:0:0:57:2034:-181.849,-17.1587,0	0/0:158:156,2:156:5537:2:68:0,-41.1471,-491.887	1/1:45:0,44:0:0:44:1580:-139.201,-13.2453,0	1/1:33:0,33:0:0:33:1168:-103.37,-9.93399,0	1/1:165:0,165:0:0:165:5874:-521,-49.67,0	0/1:96:42,53:42:1493:53:1879:-138.479,0,-105.691	1/1:82:0,82:0:0:82:2918:-257.269,-24.6845,0	0/1:72:22,50:22:770:50:1796:-136.801,0,-47.8807	0/0:199:192,7:192:6801:7:248:0,-37.7111,-589.036	0/1:85:39,46:39:1378:46:1631:-119.272,0,-97.9732	1/1:85:1,79:1:36:79:2771:-241.313,-21.0633,0	1/1:194:0,194:0:0:194:6912:-616.236,-58.3998,0	0/1:93:38,54:38:1358:54:1927:-143.735,0,-94.4825	1/1:39:0,39:0:0:39:1392:-124.099,-11.7402,0	1/1:66:0,66:0:0:66:2337:-208.474,-19.868,0	0/1:139:62,77:62:2209:77:2731:-202.073,0,-157.065	1/1:49:0,49:0:0:49:1744:-153.657,-14.7505,0	0/1:64:27,37:27:966:37:1304:-95.0566,0,-67.7642	1/1:58:0,58:0:0:58:2069:-182.562,-17.4597,0	1/1:17:0,17:0:0:17:595:-52.9242,-5.11751,0	0/1:87:69,18:69:2459:18:635:-30.5261,0,-195.077	0/1:47:28,19:28:996:19:680:-46.8233,0,-75.7913	1/1:111:1,109:1:26:109:3888:-343.931,-30.7984,0	1/1:65:0,65:0:0:65:2330:-207.783,-19.567,0
chr11	11190643	.	C	T	43514.7	PASS	AB=0.475075;ABP=19.1391;AC=48;AF=0.258065;AN=186;AO=2325;CIGAR=1X;DP=8073;DPB=8073;DPRA=1.23442;EPP=5051.68;EPPR=12478.1;GTI=2;LEN=1;MEANALT=1.02174;MQM=57.2933;MQMR=45.852;NS=93;NUMALT=1;ODDS=0.514043;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83213;QR=205424;RO=5745;RPL=2325;RPP=5051.68;RPPR=12478.1;RPR=0;RUN=1;SAF=0;SAP=5051.68;SAR=2325;SRF=0;SRP=12478.1;SRR=5745;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:82:82,0:82:2936:0:0:0,-24.6845,-259.139	0/1:110:53,57:53:1900:57:2018:-148.505,0,-133.994	0/0:78:78,0:78:2774:0:0:0,-23.4803,-242.926	0/1:105:53,52:53:1908:52:1872:-137.074,0,-137.628	0/0:94:93,1:93:3294:1:36:0,-24.7003,-289.153	0/0:46:45,1:45:1616:1:36:0,-10.9446,-139.799	0/0:101:101,0:101:3628:0:0:0,-30.404,-323.118	0/0:45:45,0:45:1582:0:0:0,-13.5463,-138.426	0/1:92:46,46:46:1656:46:1641:-119.818,0,-117.115	0/0:56:55,1:55:1937:1:36:0,-13.8031,-169.766	0/0:25:25,0:25:896:0:0:0,-7.52575,-79.8903	0/1:43:22,21:22:792:21:741:-53.9953,0,-57.1572	0/1:37:23,14:23:828:14:504:-34.4462,0,-62.0989	0/0:47:47,0:47:1692:0:0:0,-14.1484,-150.27	0/1:51:25,26:25:900:26:928:-68.4081,0,-65.2363	0/0:38:38,0:38:1368:0:0:0,-11.4391,-121.894	0/0:43:43,0:43:1525:0:0:0,-12.9443,-134.617	0/1:25:11,14:11:396:14:496:-37.3607,0,-27.6843	0/1:42:10,32:10:360:32:1144:-90.1521,0,-18.8656	0/1:163:95,68:95:3393:68:2425:-169.363,0,-252.803	0/0:155:155,0:155:5539:0:0:0,-46.6596,-489.331	0/1:111:35,76:35:1230:76:2702:-209.989,0,-76.74	0/1:38:20,18:20:712:18:648:-47.1597,0,-52.0837	0/0:115:115,0:115:4113:0:0:0,-34.6184,-364.344	0/0:58:57,1:57:2048:1:36:0,-13.8632,-177.993	0/1:315:145,170:145:5180:170:6097:-453.411,0,-367.666	0/0:203:203,0:203:7256:0:0:0,-61.1091,-643.777	0/0:35:35,0:35:1252:0:0:0,-10.536,-111.068	0/0:270:270,0:270:9657:0:0:0,-81.2781,-862.545	0/1:59:40,18:40:1421:18:648:-40.854,0,-108.677	0/0:112:112,0:112:4000:0:0:0,-33.7154,-356.325	1/1:89:0,89:0:0:89:3195:-287.487,-26.7917,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.2915	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.52101	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.85882	.:.:.:.:.:.:.:.	0/1:152:79,73:79:2813:73:2620:-190.237,0,-205.815	0/1:126:69,57:69:2480:57:2048:-146.507,0,-182.116	0/0:45:45,0:45:1612:0:0:0,-13.5463,-142.529	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.93584	0/0:95:95,0:95:3420:0:0:0,-28.5978,-302.48	0/0:22:22,0:22:792:0:0:0,-6.62266,-70.1686	0/0:131:131,0:131:4672:0:0:0,-39.4349,-413.747	0/0:56:56,0:56:2012:0:0:0,-16.8577,-179.327	0/0:45:45,0:45:1593:0:0:0,-13.5463,-142.002	0/1:83:42,41:42:1497:41:1468:-107.374,0,-109.35	0/1:59:32,27:32:1148:27:957:-68.5911,0,-82.0151	0/0:175:175,0:175:6249:0:0:0,-52.6802,-555.629	0/0:137:136,0:136:4850:0:0:0,-40.9401,-432.165	0/1:112:60,52:60:2156:52:1872:-135.013,0,-157.261	0/0:194:194,0:194:6964:0:0:0,-58.3998,-622.86	1/1:100:2,98:2:72:98:3501:-308.304,-23.2962,0	0/0:72:72,0:72:2565:0:0:0,-21.6742,-223.878	0/0:22:22,0:22:792:0:0:0,-6.62266,-70.8934	1/1:120:0,120:0:0:120:4312:-387.575,-36.1236,0	0/1:84:40,44:40:1421:44:1576:-116.746,0,-99.8576	0/1:26:10,16:10:360:16:572:-43.8005,0,-24.2862	1/1:142:5,137:5:180:137:4884:-423.073,-26.2839,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.3676	0/0:52:52,0:52:1872:0:0:0,-15.6536,-166.401	0/1:79:45,34:45:1620:34:1220:-86.301,0,-120.557	1/1:52:4,48:4:140:48:1709:-141.171,-2.80815,0	0/1:155:119,36:119:4280:36:1292:-69.8627,0,-335.218	0/0:179:178,1:178:6333:1:36:0,-50.2865,-558.975	0/1:83:40,43:40:1436:43:1544:-114.202,0,-101.85	0/0:80:80,0:80:2864:0:0:0,-24.0824,-254.95	0/1:162:104,58:104:3728:58:2080:-138.484,0,-282.408	0/0:75:74,1:74:2645:1:36:0,-18.9794,-231.298	1/1:62:1,61:1:36:61:2192:-193.891,-15.1153,0	0/0:79:79,0:79:2840:0:0:0,-23.7814,-249.223	0/0:58:58,0:58:2075:0:0:0,-17.4597,-185.529	1/1:157:2,155:2:72:155:5527:-490.657,-40.4848,0	0/0:46:46,0:46:1652:0:0:0,-13.8474,-145.233	0/0:33:33,0:33:1184:0:0:0,-9.93399,-104.687	0/0:166:166,0:166:5886:0:0:0,-49.971,-521.32	0/1:96:54,42:54:1940:42:1508:-107.052,0,-143.205	0/0:84:84,0:84:2967:0:0:0,-25.2865,-261.721	0/1:72:50,22:50:1792:22:792:-49.8529,0,-136.482	1/1:198:7,191:7:248:191:6854:-593.6,-37.4101,0	0/1:84:45,39:45:1616:39:1400:-100.253,0,-117.954	0/0:90:90,0:90:3209:0:0:0,-27.0927,-280.015	0/0:192:192,0:192:6889:0:0:0,-57.7978,-613.581	0/1:92:53,39:53:1908:39:1387:-97.3565,0,-142.426	0/0:40:40,0:40:1432:0:0:0,-12.0412,-127.455	0/0:68:68,0:68:2440:0:0:0,-20.47,-217.148	0/1:137:76,61:76:2728:61:2171:-154.315,0,-202.337	0/0:48:48,0:48:1728:0:0:0,-14.4494,-151.425	0/1:62:35,27:35:1256:27:972:-68.8444,0,-90.7792	0/0:57:57,0:57:2052:0:0:0,-17.1587,-180.977	0/0:16:16,0:16:572:0:0:0,-4.81648,-50.6458	0/1:87:18,69:18:644:69:2472:-196.293,0,-31.3006	0/1:47:19,28:19:684:28:1008:-76.8721,0,-47.1676	0/0:112:111,0:111:3945:0:0:0,-33.4143,-351.222	0/0:66:66,0:66:2338:0:0:0,-19.868,-207.46
chr11	11355290	.	G	A	251689	PASS	AB=0.540711;ABP=96.5407;AC=148;AF=0.787234;AN=188;AO=11737;CIGAR=1X;DP=14738;DPB=14738;DPRA=0;EPP=25480.9;EPPR=6487.04;GTI=0;LEN=1;MEANALT=1.06383;MQM=59.9667;MQMR=59.987;NS=94;NUMALT=1;ODDS=9.3566;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=420089;QR=106975;RO=2994;RPL=1;RPP=25480.9;RPPR=6487.04;RPR=11736;RUN=1;SAF=0;SAP=25489.6;SAR=11737;SRF=0;SRP=6504.4;SRR=2994;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	0/1:319:152,166:152:5460:166:5956:-440.187,0,-395.567	1/1:186:1,185:1:36:185:6604:-590.84,-52.3933,0	0/1:369:147,221:147:5259:221:7899:-599.913,0,-362.456	1/1:163:1,162:1:36:162:5777:-516.445,-45.4696,0	1/1:161:0,161:0:0:161:5745:-517.167,-48.4658,0	1/1:185:0,185:0:0:185:6600:-594.074,-55.6906,0	1/1:399:0,399:0:0:399:14251:-1282.29,-120.111,0	0/1:120:51,69:51:1823:69:2456:-185.168,0,-128.227	1/1:172:0,172:0:0:172:6172:-555.576,-51.7772,0	1/1:73:1,72:1:36:72:2563:-227.322,-18.3769,0	0/1:105:59,46:59:2087:46:1639:-116.19,0,-156.489	0/1:72:38,34:38:1351:34:1208:-87.3519,0,-100.215	1/1:82:0,82:0:0:82:2930:-263.933,-24.6845,0	0/1:67:38,29:38:1364:29:1044:-74.1058,0,-102.892	1/1:73:1,72:1:36:72:2588:-229.57,-18.3769,0	1/1:96:0,96:0:0:96:3435:-309.363,-28.8989,0	0/1:84:43,41:43:1544:41:1464:-106.77,0,-113.967	0/1:31:18,13:18:633:13:468:-33.1277,0,-47.9631	0/1:281:126,155:126:4516:155:5541:-414.214,0,-322.018	1/1:177:0,177:0:0:177:6278:-565.115,-53.2823,0	0/1:190:126,64:126:4504:64:2292:-149.345,0,-348.333	0/1:35:23,11:23:820:11:396:-25.3879,0,-63.5278	1/1:228:0,228:0:0:228:8146:-733.156,-68.6348,0	1/1:120:0,120:0:0:120:4299:-387.08,-36.1236,0	0/1:510:247,263:247:8850:263:9426:-694.772,0,-642.401	1/1:348:0,348:0:0:348:12434:-1118.89,-104.758,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:404:0,404:0:0:404:14502:-1304.92,-121.616,0	0/1:483:201,280:201:7207:280:10041:-758.467,0,-503.527	1/1:158:0,158:0:0:158:5672:-510.595,-47.5627,0	0/1:21:12,9:12:428:9:316:-22.4572,0,-32.5372	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:219:106,113:106:3800:113:4056:-299.301,0,-276.272	0/1:348:121,227:121:4300:227:8122:-626.236,0,-282.419	1/1:65:1,64:1:36:64:2296:-203.303,-15.9687,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:293:0,293:0:0:293:10484:-943.472,-88.2018,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:308:0,308:0:0:308:11028:-992.407,-92.7172,0	1/1:75:0,75:0:0:75:2670:-240.531,-22.5773,0	1/1:86:0,86:0:0:86:3079:-277.338,-25.8886,0	0/1:161:92,69:92:3300:69:2463:-173.43,0,-248.753	0/1:247:99,148:99:3535:148:5289:-401.788,0,-244.005	1/1:337:1,336:1:36:336:12040:-1079.85,-97.8488,0	1/1:201:1,200:1:36:200:7133:-638.418,-56.9088,0	0/1:265:105,160:105:3768:160:5733:-436.312,0,-259.546	1/1:354:0,354:0:0:354:12701:-1142.9,-106.565,0	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	1/1:282:0,282:0:0:282:10073:-906.498,-84.8905,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:81:37,44:37:1328:44:1580:-118.102,0,-95.4375	0/1:205:90,115:90:3192:115:4128:-309.987,0,-225.792	0/1:59:34,25:34:1216:25:900:-63.5602,0,-91.9858	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:103:0,103:0:0:103:3691:-332.387,-31.0061,0	0/1:125:71,54:71:2516:54:1944:-137.607,0,-189.062	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:296:133,163:133:4768:163:5860:-438.403,0,-340.172	1/1:331:4,326:4:144:326:11675:-1037.3,-86.3861,0	0/1:181:72,109:72:2580:109:3916:-298.145,0,-177.963	1/1:111:0,111:0:0:111:3987:-359.008,-33.4143,0	0/1:224:101,123:101:3596:123:4416:-329.906,0,-256.415	1/1:170:1,169:1:36:169:6059:-541.813,-47.5768,0	0/1:28:13,15:13:468:15:527:-39.3313,0,-34.0308	1/1:136:0,136:0:0:136:4839:-435.663,-40.9401,0	1/1:111:0,111:0:0:111:3979:-358.299,-33.4143,0	0/1:60:41,18:41:1457:18:648:-40.5722,0,-113.345	1/1:209:0,209:0:0:209:7456:-671.083,-62.9153,0	1/1:79:0,79:0:0:79:2819:-253.949,-23.7814,0	1/1:209:2,207:2:72:207:7364:-655.331,-56.0785,0	0/1:260:86,174:86:3068:174:6250:-484.324,0,-198.079	1/1:301:1,300:1:36:300:10726:-961.646,-87.0118,0	0/1:213:93,120:93:3309:120:4295:-322.606,0,-233.909	0/1:33:18,15:18:648:15:536:-38.6408,0,-48.7179	0/1:210:76,134:76:2727:134:4820:-370.736,0,-182.456	1/1:172:0,172:0:0:172:6176:-555.936,-51.7772,0	1/1:419:0,419:0:0:419:15003:-1349.91,-126.132,0	0/1:106:54,52:54:1929:52:1868:-136.49,0,-141.976	1/1:88:0,88:0:0:88:3156:-284.251,-26.4906,0	1/1:95:0,95:0:0:95:3395:-305.765,-28.5979,0	0/1:174:93,81:93:3287:81:2900:-208.857,0,-243.668	1/1:39:0,39:0:0:39:1395:-125.848,-11.7402,0	0/1:84:42,42:42:1500:42:1508:-110.728,0,-110.008	1/1:62:0,62:0:0:62:2212:-199.345,-18.6639,0	1/1:36:1,35:1:36:35:1260:-110.107,-7.23881,0	0/1:91:47,44:47:1669:44:1580:-115.098,0,-123.102	0/1:82:50,32:50:1768:32:1148:-78.9454,0,-134.716	1/1:129:0,129:0:0:129:4627:-416.591,-38.8329,0	1/1:96:0,96:0:0:96:3429:-308.82,-28.8989,0
chr11	11357131	.	A	G	34637.6	PASS	AB=0.51228;ABP=8.29003;AC=40;AF=0.212766;AN=188;AO=2069;CIGAR=1X;DP=9143;DPB=9143;DPRA=1.09272;EPP=4495.79;EPPR=15342.3;GTI=0;LEN=1;MEANALT=1.02273;MQM=50.682;MQMR=47.6118;NS=94;NUMALT=1;ODDS=1.66001;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73972;QR=253273;RO=7072;RPL=0;RPP=4495.79;RPPR=15342.3;RPR=2069;RUN=1;SAF=2069;SAP=4495.79;SAR=0;SRF=7072;SRP=15359.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1472:0:0:0,-12.3422,-129.803	0/1:157:67,90:67:2370:90:3220:-241.07,0,-163.724	0/0:113:113,0:113:4049:0:0:0,-34.0164,-359.449	0/1:189:84,105:84:3020:105:3764:-281.114,0,-213.087	0/0:132:132,0:132:4725:0:0:0,-39.736,-413.012	0/0:62:62,0:62:2232:0:0:0,-18.6639,-198.952	0/0:101:101,0:101:3620:0:0:0,-30.404,-324.65	0/0:120:120,0:120:4277:0:0:0,-36.1236,-379.935	0/1:75:39,36:39:1396:36:1296:-92.9271,0,-101.913	0/0:106:106,0:106:3781:0:0:0,-31.9092,-337.993	0/0:56:56,0:56:2012:0:0:0,-16.8577,-180.478	0/1:91:49,42:49:1760:42:1499:-107.044,0,-129.091	0/1:70:34,36:34:1216:36:1296:-95.227,0,-86.9708	0/0:59:59,0:59:2120:0:0:0,-17.7608,-185.661	0/1:64:36,28:36:1292:28:993:-70.2906,0,-96.3826	0/0:45:45,0:45:1620:0:0:0,-13.5463,-141.643	0/0:65:64,0:64:2289:0:0:0,-19.2659,-203.345	0/1:43:21,22:21:752:22:788:-57.9228,0,-54.365	0/1:34:18,16:18:648:16:576:-41.1501,0,-47.904	0/1:177:93,84:93:3321:84:2994:-216.039,0,-244.66	0/0:151:151,0:151:5409:0:0:0,-45.4555,-471.022	0/1:44:10,34:10:360:34:1205:-95.249,0,-19.4465	0/1:41:26,15:26:923:15:529:-35.399,0,-70.4808	0/0:118:118,0:118:4240:0:0:0,-35.5215,-371.459	0/0:63:63,0:63:2252:0:0:0,-18.9649,-197.707	0/1:244:130,114:130:4611:114:4059:-289.634,0,-340.818	0/0:266:265,1:265:9475:1:36:0,-76.5255,-824.362	0/0:42:40,1:40:1440:1:32:0,-9.83903,-123.343	0/0:376:376,0:376:13473:0:0:0,-113.187,-1208.14	0/1:119:70,49:70:2508:49:1760:-119.892,0,-184.914	0/0:60:60,0:60:2152:0:0:0,-18.0618,-192.945	0/1:25:9,16:9:324:16:572:-43.5926,0,-20.7832	0/0:29:29,0:29:1044:0:0:0,-8.72987,-92.3065	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.0302	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.6321	0/0:18:18,0:18:640:0:0:0,-5.41854,-56.8644	0/1:249:122,127:122:4376:127:4546:-333.618,0,-316.007	0/1:141:54,87:54:1940:87:3082:-231.426,0,-127.579	0/0:79:78,1:78:2804:1:36:0,-20.5937,-245.477	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.3286	0/0:122:122,0:122:4372:0:0:0,-36.7257,-383.174	0/0:33:33,0:33:1188:0:0:0,-9.93399,-103.386	0/0:178:178,0:178:6388:0:0:0,-53.5833,-554.469	0/0:75:75,0:75:2696:0:0:0,-22.5772,-241.413	0/0:86:86,0:86:3084:0:0:0,-25.8886,-275.992	0/1:121:60,61:60:2133:61:2188:-160.44,0,-155.374	0/1:170:82,88:82:2944:88:3141:-230.064,0,-210.234	0/0:237:237,0:237:8426:0:0:0,-71.3441,-754.203	0/0:96:96,0:96:3444:0:0:0,-28.8989,-308.371	0/1:107:45,62:45:1620:62:2228:-168.074,0,-113.051	0/0:139:139,0:139:4992:0:0:0,-41.8432,-448.205	0/1:16:11,5:11:396:5:176:-11.3479,0,-30.642	0/0:163:163,0:163:5852:0:0:0,-49.0679,-519.698	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.0169	0/1:15:10,5:10:360:5:180:-11.9359,0,-27.8259	0/1:218:93,125:93:3336:125:4475:-329.278,0,-227.949	0/1:43:28,15:28:1000:15:517:-33.6847,0,-76.7232	0/1:2:1,1:1:36:1:36:-2.99362,0,-2.99111	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.2081	0/0:51:51,0:51:1836:0:0:0,-15.3525,-160.257	0/1:131:60,71:60:2156:71:2548:-189.554,0,-153.476	0/1:7:5,2:5:176:2:72:-4.71982,0,-14.03	0/1:165:90,75:90:3228:75:2696:-192.87,0,-240.199	0/0:103:103,0:103:3689:0:0:0,-31.0061,-330.103	0/1:82:38,44:38:1368:44:1572:-114.764,0,-95.2573	0/0:109:109,0:109:3908:0:0:0,-32.8123,-350.334	0/1:119:57,62:57:2040:62:2216:-163.399,0,-146.522	0/0:76:76,0:76:2713:0:0:0,-22.8783,-240.729	0/1:20:7,13:7:237:13:468:-35.5243,0,-15.2122	0/0:87:87,0:87:3109:0:0:0,-26.1896,-275.503	0/0:83:83,0:83:2980:0:0:0,-24.9855,-267.403	0/1:21:10,11:10:352:11:396:-29.6101,0,-25.5767	0/0:113:113,0:113:4041:0:0:0,-34.0164,-357.928	0/0:59:59,0:59:2124:0:0:0,-17.7608,-188.796	0/0:167:167,0:167:5973:0:0:0,-50.272,-520.686	0/1:191:90,101:90:3240:101:3620:-267.998,0,-232.661	0/0:97:97,0:97:3484:0:0:0,-29.1999,-309.1	0/1:103:46,57:46:1652:57:2028:-149.732,0,-116.392	0/1:17:10,7:10:360:7:252:-17.7866,0,-26.5846	0/1:196:92,104:92:3289:104:3727:-269.648,0,-227.859	0/0:97:97,0:97:3476:0:0:0,-29.1999,-309.128	0/0:255:255,0:255:9125:0:0:0,-76.7626,-816.267	0/1:110:50,60:50:1773:60:2156:-159.979,0,-125.502	0/0:64:63,1:63:2245:1:36:0,-15.6727,-197.692	0/0:123:123,0:123:4404:0:0:0,-37.0267,-393.288	0/1:158:85,73:85:3048:73:2603:-186.519,0,-225.395	0/0:55:55,0:55:1953:0:0:0,-16.5566,-173.699	0/1:81:45,36:45:1612:36:1292:-91.0501,0,-119.216	0/0:76:76,0:76:2728:0:0:0,-22.8783,-243.29	0/0:27:27,0:27:972:0:0:0,-8.12781,-85.6113	0/1:102:58,44:58:2080:44:1580:-109.367,0,-152.497	0/1:73:31,42:31:1116:42:1486:-111.632,0,-78.3869	0/0:58:58,0:58:2080:0:0:0,-17.4597,-186.075	0/0:129:129,0:129:4628:0:0:0,-38.8329,-414.418
chr11	11357340	.	A	G	186610	PASS	AB=0.473593;ABP=34.4339;AC=148;AF=0.787234;AN=188;AO=9320;CIGAR=1X;DP=12080;DPB=12080;DPRA=0;EPP=20241.1;EPPR=5981.07;GTI=0;LEN=1;MEANALT=1.07447;MQM=40.257;MQMR=59.7065;NS=94;NUMALT=1;ODDS=0.455462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=333906;QR=98735;RO=2753;RPL=9320;RPP=20241.1;RPPR=5981.07;RPR=0;RUN=1;SAF=0;SAP=20241.1;SAR=9320;SRF=0;SRP=5981.07;SRR=2753;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:99:0,99:0:0:99:3548:-295.701,-29.802,0	0/1:92:57,35:57:2048:35:1248:-78.5818,0,-156.889	1/1:160:0,160:0:0:160:5718:-479.75,-48.1648,0	0/1:353:160,193:160:5721:193:6924:-496.338,0,-408.736	1/1:111:0,111:0:0:111:3972:-341.425,-33.4143,0	1/1:74:0,74:0:0:74:2652:-222.917,-22.2762,0	1/1:184:2,181:2:72:181:6488:-557.79,-48.6052,0	1/1:183:0,183:0:0:183:6532:-550.525,-55.0885,0	0/1:187:91,96:91:3268:96:3452:-232.985,0,-238.014	1/1:112:0,112:0:0:112:4016:-348.645,-33.7154,0	1/1:59:0,59:0:0:59:2112:-184.6,-17.7608,0	0/1:107:60,47:60:2156:47:1692:-110.496,0,-161.07	0/1:109:66,43:66:2372:43:1548:-97.2219,0,-180.89	1/1:101:0,101:0:0:101:3620:-311.458,-30.404,0	0/1:83:48,35:48:1728:35:1252:-84.0545,0,-130.817	1/1:60:0,60:0:0:60:2144:-183.701,-18.0618,0	1/1:52:0,52:0:0:52:1860:-156.605,-15.6536,0	0/1:37:16,21:16:576:21:752:-52.9685,0,-41.0287	0/1:24:5,19:5:180:19:684:-49.3023,0,-9.32734	0/1:243:154,89:154:5532:89:3192:-202.834,0,-424.816	1/1:210:0,210:0:0:210:7508:-642.319,-63.2163,0	0/1:213:148,65:148:5308:65:2328:-140.613,0,-413.72	0/1:198:125,73:125:4492:73:2628:-168.772,0,-344.831	1/1:137:0,137:0:0:137:4912:-422.1,-41.2411,0	1/1:156:0,156:0:0:156:5596:-480.259,-46.9607,0	0/1:369:204,165:204:7316:165:5916:-408.289,0,-547.032	1/1:254:2,252:2:72:252:9032:-770.311,-69.6249,0	1/1:51:0,51:0:0:51:1817:-155.957,-15.3525,0	1/1:429:0,429:0:0:429:15376:-1354.51,-129.142,0	0/1:267:143,124:143:5136:124:4436:-300.708,0,-381.981	1/1:180:1,179:1:36:179:6377:-550.57,-50.5897,0	0/1:7:4,3:4:144:3:104:-7.26824,0,-11.2064	1/1:11:0,11:0:0:11:396:-34.4841,-3.31133,0	1/1:6:0,6:0:0:6:212:-16.22,-1.80618,0	1/1:14:0,14:0:0:14:500:-42.0122,-4.21442,0	1/1:10:0,10:0:0:10:360:-30.8272,-3.0103,0	0/1:241:124,117:124:4452:117:4200:-298.485,0,-328.264	0/1:232:105,127:105:3749:127:4539:-318.188,0,-266.367	1/1:55:0,55:0:0:55:1976:-165.526,-16.5567,0	1/1:3:0,3:0:0:3:104:-9.37545,-0.90309,0	1/1:247:0,247:0:0:247:8856:-758.596,-74.3544,0	1/1:25:0,25:0:0:25:900:-76.9234,-7.52575,0	1/1:249:0,249:0:0:249:8916:-764.945,-74.9565,0	1/1:78:0,78:0:0:78:2804:-244.157,-23.4803,0	1/1:72:0,72:0:0:72:2588:-225.468,-21.6742,0	0/1:199:98,101:98:3516:101:3617:-258.175,0,-256.742	0/1:203:100,103:100:3577:103:3685:-248.142,0,-260.977	1/1:320:3,316:3:108:316:11321:-976.04,-86.3061,0	1/1:160:0,159:0:0:159:5704:-498.219,-47.8638,0	0/1:204:104,100:104:3702:100:3592:-253.052,0,-271.956	1/1:232:0,231:0:0:231:8267:-727.505,-69.5379,0	0/1:9:5,4:5:180:4:144:-10.2507,0,-13.838	1/1:148:4,144:4:129:144:5155:-419.615,-32.6501,0	1/1:87:0,87:0:0:87:3122:-274.075,-26.1896,0	0/1:16:9,7:9:324:7:252:-16.8642,0,-24.6894	0/1:133:69,64:69:2480:64:2281:-156.074,0,-183.411	0/1:90:38,52:38:1364:52:1856:-135.661,0,-95.9586	0/1:10:8,2:8:288:2:68:-3.34012,0,-23.2004	1/1:5:0,5:0:0:5:180:-14.7396,-1.50515,0	1/1:101:0,101:0:0:101:3600:-306.427,-30.404,0	0/1:111:58,53:58:2088:53:1898:-131.756,0,-154.685	0/1:6:4,2:4:144:2:68:-4.52208,0,-11.5074	0/1:195:94,101:94:3345:101:3632:-259.018,0,-242.565	1/1:242:5,237:5:180:237:8504:-721.448,-56.2972,0	0/1:94:40,54:40:1440:54:1944:-137.994,0,-101.59	1/1:86:1,85:1:36:85:3031:-261.102,-22.2903,0	0/1:231:121,110:121:4336:110:3944:-273.76,0,-320.858	1/1:178:0,178:0:0:178:6365:-556.239,-53.5833,0	0/1:40:21,19:21:756:19:684:-46.5672,0,-56.326	1/1:103:0,103:0:0:103:3696:-310.352,-31.0061,0	1/1:58:0,58:0:0:58:2084:-183.839,-17.4597,0	0/1:9:7,2:7:252:2:72:-3.94586,0,-20.3197	1/1:179:0,179:0:0:179:6401:-537.842,-53.8844,0	1/1:142:0,141:0:0:141:5060:-424.018,-42.4452,0	1/1:215:0,215:0:0:215:7708:-657.926,-64.7215,0	0/1:122:43,79:43:1548:79:2840:-210.663,0,-102.883	1/1:215:0,215:0:0:215:7686:-646.991,-64.7215,0	0/1:116:69,47:69:2480:47:1692:-108.197,0,-188.448	0/1:26:12,14:12:432:14:500:-34.9373,0,-31.3944	0/1:86:63,23:63:2268:23:820:-44.7395,0,-178.475	1/1:153:1,152:1:32:152:5448:-455.469,-42.8583,0	1/1:290:1,288:1:36:288:10333:-893.628,-83.7544,0	0/1:62:34,28:34:1220:28:1008:-69.6697,0,-91.4359	1/1:93:0,93:0:0:93:3332:-291.604,-27.9958,0	1/1:53:0,53:0:0:53:1900:-166.18,-15.9546,0	0/1:183:86,97:86:3080:97:3476:-247.068,0,-222.333	1/1:33:0,32:0:0:32:1152:-97.5629,-9.63296,0	0/1:91:40,51:40:1440:51:1824:-125.447,0,-102.471	1/1:105:0,105:0:0:105:3776:-316.782,-31.6082,0	1/1:35:0,35:0:0:35:1256:-108.734,-10.5361,0	0/1:104:43,61:43:1544:61:2180:-154.732,0,-107.913	0/1:86:55,31:55:1980:31:1116:-70.5178,0,-152.581	1/1:176:0,176:0:0:176:6285:-545.105,-52.9813,0	1/1:101:2,99:2:72:99:3560:-302.354,-23.5673,0
chr11	11357550	.	TTTG	CTTG,CTTA	188941	PASS	AB=0.527552,0.467227;ABP=25.7453,35.1768;AC=147,39;AF=0.790323,0.209677;AN=186;AO=7016,1621;CIGAR=1X3M,1X2M1X;DP=8678;DPB=8678;DPRA=23.5707,1.12639;EPP=15212,3522.97;EPPR=16.0391;GTI=4;LEN=1,4;MEANALT=1.80435,2.39535;MQM=59.9517,59.0839;MQMR=60;NS=93;NUMALT=2;ODDS=0.493839;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=251149,57588;QR=208;RO=6;RPL=7013,1621;RPP=15212,3522.97;RPPR=16.0391;RPR=3,0;RUN=1,1;SAF=0,0;SAP=15238.1,3522.97;SAR=7016,1621;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,36,0:0:0:36,0:1276,0:-114.788,-10.8371,0,-114.788,-10.8371,-114.788	1/2:117:0,58,57:0:0:58,57:2072,2031:-334.471,-165.535,-148.075,-169.013,0,-151.855	1/1:135:0,135,0:0:0:135,0:4841,0:-435.84,-40.6391,0,-435.84,-40.6391,-435.84	1/2:163:0,91,69:0:0:91,69:3256,2454:-464.879,-199.385,-171.992,-265.499,0,-244.728	1/1:89:0,88,0:0:0:88,0:3156,0:-284.056,-26.4906,0,-284.056,-26.4906,-284.056	1/1:76:0,76,0:0:0:76,0:2712,0:-244.322,-22.8783,0,-244.322,-22.8783,-244.322	1/1:163:0,163,0:0:0:163,0:5852,0:-526.78,-49.0679,0,-526.78,-49.0679,-526.78	1/1:119:0,119,0:0:0:119,0:4272,0:-384.656,-35.8226,0,-384.656,-35.8226,-384.656	1/2:112:0,48,64:0:0:48,64:1713,2253:-323.088,-183.438,-168.988,-140.004,0,-120.738	1/1:106:0,106,0:0:0:106,0:3784,0:-340.757,-31.9092,0,-340.757,-31.9092,-340.757	1/1:27:0,27,0:0:0:27,0:964,0:-87.076,-8.12781,0,-87.076,-8.12781,-87.076	1/2:55:0,39,16:0:0:39,16:1404,575:-161.828,-47.2682,-35.528,-114.919,0,-110.103	1/2:39:0,27,12:0:0:27,12:972,432:-114.919,-35.6088,-27.481,-79.6701,0,-76.0577	1/1:50:0,50,0:0:0:50,0:1792,0:-161.562,-15.0515,0,-161.562,-15.0515,-161.562	1/2:31:0,11,19:0:0:11,19:396,681:-87.6986,-55.386,-52.0746,-32.3204,0,-26.6008	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/1:36:0,36,0:0:0:36,0:1281,0:-115.591,-10.8371,0,-115.591,-10.8371,-115.591	1/2:25:0,21,4:0:0:21,4:756,144:-73.7953,-12.1095,-5.78787,-62.0456,0,-60.8415	1/2:17:0,9,8:0:0:9,8:324,271:-48.7585,-22.3105,-19.6013,-26.7966,0,-24.3883	1/2:213:0,123,88:0:0:123,88:4408,3131:-614.53,-255.023,-217.996,-359.514,0,-333.023	1/1:151:0,151,0:0:0:151,0:5407,0:-486.759,-45.4555,0,-486.759,-45.4555,-486.759	1/2:156:0,47,108:0:0:47,108:1674,3832:-448.423,-311.982,-297.834,-136.545,0,-104.033	1/2:157:0,111,46:0:0:111,46:3988,1626:-458.012,-132.761,-99.3466,-325.606,0,-311.758	1/1:124:0,124,0:0:0:124,0:4445,0:-400.172,-37.3277,0,-400.172,-37.3277,-400.172	1/1:90:0,90,0:0:0:90,0:3224,0:-290.382,-27.0927,0,-290.382,-27.0927,-290.382	1/2:314:0,156,158:0:0:156,158:5596,5636:-916.18,-459.745,-412.784,-456.792,0,-409.229	1/1:96:0,95,0:0:0:95,0:3382,0:-304.233,-28.5979,0,-304.233,-28.5979,-304.233	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:273:0,272,0:0:0:272,0:9737,0:-875.919,-81.8802,0,-875.919,-81.8802,-875.919	1/2:159:0,79,80:0:0:79,80:2836,2856:-464.481,-233.142,-209.361,-231.697,0,-207.614	1/1:175:0,174,0:0:0:174,0:6206,0:-558.262,-52.3792,0,-558.262,-52.3792,-558.262	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/2:85:0,48,37:0:0:48,37:1728,1314:-248.421,-107.423,-92.9731,-141.356,0,-130.218	1/2:191:1,102,86:1:36:102,86:3641,3058:-542.672,-246.14,-218.372,-293.891,0,-270.94	1/1:25:0,25,0:0:0:25,0:892,0:-80.5997,-7.52575,0,-80.5997,-7.52575,-80.5997	.:.:.:.:.:.:.:.	1/1:150:0,147,1:0:0:147,1:5263,36:-473.446,-44.2514,0,-470.508,-41.314,-470.207	1/1:17:0,17,0:0:0:17,0:604,0:-54.6906,-5.11751,0,-54.6906,-5.11751,-54.6906	1/1:141:2,139,0:2:65:139,0:4964,0:-440.734,-36.2719,0,-441.337,-41.8432,-446.582	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/1:40:0,40,0:0:0:40,0:1427,0:-128.726,-12.0412,0,-128.726,-12.0412,-128.726	1/2:109:0,60,49:0:0:60,49:2141,1730:-315.756,-141.216,-123.154,-174.894,0,-160.144	1/2:133:0,75,58:0:0:75,58:2696,2067:-387.915,-167.965,-145.388,-220.307,0,-202.847	1/1:177:0,175,2:0:0:175,2:6272,71:-564.215,-52.6803,0,-558.43,-46.541,-557.828	1/1:119:0,118,0:0:0:118,0:4191,0:-377.008,-35.5215,0,-377.008,-35.5215,-377.008	1/2:113:0,57,56:0:0:57,56:2040,1978:-327.596,-161.24,-144.081,-166.712,0,-149.854	1/1:184:0,184,0:0:0:184,0:6611,0:-595.065,-55.3895,0,-595.065,-55.3895,-595.065	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:198:0,198,0:0:0:198,0:7103,0:-639.32,-59.6039,0,-639.32,-59.6039,-639.32	1/1:80:1,77,0:1:35:77,0:2730,0:-242.442,-20.3316,0,-242.743,-23.1793,-245.591	1/2:10:0,4,6:0:0:4,6:144,216:-29.734,-17.9843,-16.7802,-12.1095,0,-10.3033	1/2:153:1,87,65:1:36:87,65:3101,2306:-437.348,-184.877,-161.625,-249.83,0,-233.2	1/2:47:0,26,21:0:0:26,21:928,750:-137.149,-61.4946,-53.6678,-76.0109,0,-69.6892	1/2:3:0,2,1:0:0:2,1: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chr11	11769671	.	T	A	45291.9	PASS	AB=0.630261;ABP=573.817;AC=43;AF=0.228723;AN=188;AO=2471;CIGAR=1X;DP=7549;DPB=7549;DPRA=1.53648;EPP=5153.77;EPPR=10964.6;GTI=8;LEN=1;MEANALT=1.11111;MQM=59.8596;MQMR=59.9485;NS=94;NUMALT=1;ODDS=0.271919;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88206;QR=181280;RO=5068;RPL=2446;RPP=5153.77;RPPR=10956;RPR=25;RUN=1;SAF=0;SAP=5368.72;SAR=2471;SRF=1;SRP=10999.3;SRR=5067;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:71:39,32:39:1387:32:1148:-82.2567,0,-103.753	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.475	0/1:214:92,122:92:3280:122:4355:-327.705,0,-231.001	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.397	0/0:50:48,2:48:1712:2:68:0,-8.59379,-147.908	0/1:117:33,84:33:1175:84:3016:-236.45,0,-70.8364	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:96:40,56:40:1432:56:2003:-151.644,0,-100.279	0/1:72:24,48:24:860:48:1719:-133.251,0,-56.0477	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:69:17,52:17:604:52:1837:-144.837,0,-33.9195	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:39:14,25:14:504:25:878:-67.4196,0,-33.9497	0/1:32:10,22:10:360:22:792:-61.9727,0,-23.1113	0/1:136:52,84:52:1864:84:3006:-229.793,0,-127.099	0/0:130:130,0:130:4634:0:0:0,-39.1339,-417.224	0/1:108:17,91:17:608:91:3240:-259.301,0,-22.5408	0/1:103:38,65:38:1364:65:2340:-179.85,0,-92.0546	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:53:52,1:52:1872:1:36:0,-12.3563,-165.16	0/1:260:96,164:96:3452:164:5814:-444.618,0,-232.623	0/0:182:181,0:181:6471:0:0:0,-54.4864,-582.114	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:282:282,0:282:10080:0:0:0,-84.8905,-907.11	0/1:134:61,73:61:2188:73:2616:-195.349,0,-156.848	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:207:77,130:77:2747:130:4653:-356.617,0,-185.159	0/1:119:33,86:33:1180:86:3071:-240.796,0,-70.6855	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:143:143,0:143:5122:0:0:0,-43.0473,-461.118	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.317	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/1:102:32,70:32:1148:70:2512:-195.624,0,-72.9248	0/1:125:39,86:39:1383:86:3076:-238.5,0,-87.1393	0/0:127:127,0:127:4552:0:0:0,-38.2308,-409.846	0/0:126:126,0:126:4499:0:0:0,-37.9298,-405.079	0/1:93:34,59:34:1216:59:2107:-161.903,0,-81.7508	0/0:74:73,0:73:2612:0:0:0,-21.9752,-235.008	1/1:5:0,5:0:0:5:176:-16.1661,-1.50515,0	0/0:215:213,1:213:7640:1:36:0,-61.182,-684.016	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	1/1:11:1,10:1:32:10:356:-29.1819,-0.112017,0	0/1:168:66,102:66:2347:102:3651:-278.221,0,-160.909	0/1:40:12,28:12:428:28:1004:-78.6347,0,-26.8176	0/1:14:2,12:2:72:12:423:-34.1906,0,-2.6223	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/1:85:26,59:26:932:59:2103:-163.949,0,-58.6113	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	0/1:189:84,105:84:3000:105:3737:-279.623,0,-213.337	0/0:132:128,4:128:4584:4:144:0,-26.4223,-399.393	0/1:46:24,22:24:845:22:792:-57.7583,0,-62.5182	0/0:83:83,0:83:2967:0:0:0,-24.9855,-267.263	0/1:169:77,92:77:2743:92:3271:-243.692,0,-196.236	0/0:75:70,3:70:2503:3:104:0,-12.6149,-215.821	0/1:41:17,24:17:595:24:860:-65.3796,0,-41.469	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7297	0/1:19:3,16:3:104:16:576:-46.4554,0,-3.98324	0/0:134:134,0:134:4791:0:0:0,-40.338,-431.338	0/0:115:115,0:115:4107:0:0:0,-34.6184,-369.814	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.269	0/1:280:108,171:108:3872:171:6136:-467.991,0,-264.327	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:111:47,64:47:1692:64:2288:-172.767,0,-119.144	0/1:12:2,10:2:72:10:360:-29.1319,0,-3.22436	0/1:143:56,86:56:2003:86:3064:-231.938,0,-137.437	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.087	0/0:204:203,0:203:7254:0:0:0,-61.1091,-652.553	0/1:56:18,38:18:648:38:1359:-105.752,0,-41.7942	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/1:151:57,94:57:2027:94:3359:-257.063,0,-137.247	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/1:76:30,46:30:1076:46:1647:-125.638,0,-74.2713	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:96:34,61:34:1216:61:2148:-164.232,0,-80.8277	0/1:77:16,61:16:576:61:2154:-170.945,0,-28.9957	0/0:121:121,0:121:4335:0:0:0,-36.4246,-389.388	0/0:89:88,0:88:3148:0:0:0,-26.4906,-283.225
chr11	11769698	.	GCT	CCT	104882	PASS	AB=0.364519;ABP=626.698;AC=146;AF=0.776596;AN=188;AO=5047;CIGAR=1X2M;DP=7565;DPB=7565;DPRA=18.2512;EPP=10798;EPPR=5396.95;GTI=11;LEN=1;MEANALT=1.22826;MQM=59.9556;MQMR=59.8462;NS=94;NUMALT=1;ODDS=0.891256;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180332;QR=88069;RO=2484;RPL=5028;RPP=10798;RPPR=5396.95;RPR=19;RUN=1;SAF=0;SAP=10962.4;SAR=5047;SRF=0;SRP=5396.95;SRR=2484;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:73:34,38:34:1207:38:1347:-99.4942,0,-86.9019	1/1:99:0,98:0:0:98:3516:-316.274,-29.5009,0	0/1:213:123,90:123:4381:90:3224:-226.263,0,-330.344	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:71:0,66:0:0:66:2359:-212.212,-19.868,0	1/1:48:2,45:2:70:45:1605:-138.088,-7.85759,0	0/1:122:85,37:85:3017:37:1327:-83.0066,0,-235.036	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:98:58,39:58:2068:39:1385:-95.3872,0,-156.832	0/1:72:48,24:48:1724:24:864:-56.4084,0,-133.702	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:72:54,18:54:1931:18:648:-36.9777,0,-152.393	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:39:25,14:25:875:14:504:-33.9497,0,-66.501	0/1:31:19,10:19:676:10:356:-23.2922,0,-52.0781	0/1:139:87,52:87:3091:52:1868:-126.556,0,-236.529	1/1:125:0,125:0:0:125:4436:-399.41,-37.6288,0	0/1:109:94,15:94:3313:15:540:-16.1243,0,-265.576	0/1:104:66,38:66:2335:38:1364:-91.7536,0,-179.099	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:56:1,55:1:36:55:1960:-173.077,-13.2594,0	0/1:260:164,95:164:5761:95:3412:-228.967,0,-440.24	1/1:183:0,182:0:0:182:6501:-584.81,-54.7875,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:277:0,276:0:0:276:9867:-887.61,-83.0843,0	0/1:134:73,61:73:2583:61:2171:-155.318,0,-192.379	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:207:129,75:129:4594:75:2687:-180.305,0,-351.837	0/1:122:89,33:89:3189:33:1188:-70.5029,0,-250.508	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:142:0,142:0:0:142:5077:-457.074,-42.7463,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:101:0,101:0:0:101:3604:-324.565,-30.404,0	1/1:37:0,36:0:0:36:1292:-116.224,-10.8371,0	1/1:40:0,40:0:0:40:1433:-129.268,-12.0412,0	0/1:104:72,32:72:2538:32:1144:-71.9624,0,-197.363	0/1:128:89,39:89:3140:39:1374:-85.4253,0,-243.734	1/1:125:0,124:0:0:124:4456:-400.849,-37.3277,0	1/1:129:0,129:0:0:129:4617:-415.69,-38.8329,0	0/1:97:62,35:62:2188:35:1247:-83.3303,0,-167.984	1/1:70:0,70:0:0:70:2477:-223.182,-21.0721,0	0/0:5:5,0:5:178:0:0:0,-1.50515,-16.3391	1/1:217:1,216:1:36:216:7702:-689.601,-61.7252,0	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0701	0/1:168:103,65:103:3652:65:2331:-159.463,0,-278.313	0/1:40:28,12:28:1008:12:428:-26.8176,0,-78.9952	0/1:13:11,2:11:392:2:68:-2.54432,0,-31.7069	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:49:0,49:0:0:49:1750:-157.784,-14.7505,0	0/1:84:59,25:59:2100:25:900:-56.0345,0,-163.98	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/1:191:104,87:104:3701:87:3120:-223.529,0,-275.711	1/1:133:4,129:4:135:129:4608:-402.376,-27.5545,0	0/1:45:22,23:22:790:23:824:-60.937,0,-57.879	1/1:83:0,83:0:0:83:2949:-265.642,-24.9855,0	0/1:163:90,73:90:3184:73:2601:-185.268,0,-237.689	1/1:75:3,72:3:108:72:2584:-222.734,-12.5021,0	0/1:40:24,16:24:858:16:561:-38.6456,0,-65.5006	1/1:42:0,41:0:0:41:1461:-131.424,-12.3422,0	1/1:25:0,25:0:0:25:896:-80.9321,-7.52575,0	0/1:20:17,3:17:597:3:108:-4.05457,0,-48.0373	1/1:138:0,138:0:0:138:4930:-443.842,-41.5421,0	1/1:111:0,111:0:0:111:3976:-358.03,-33.4143,0	1/1:112:0,112:0:0:112:4011:-361.178,-33.7154,0	0/1:281:166,112:166:5887:112:3971:-273.533,0,-445.894	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:113:66,47:66:2318:47:1684:-117.831,0,-174.86	0/1:12:8,2:8:280:2:68:-3.09755,0,-22.1706	0/1:144:88,55:88:3109:55:1968:-133.988,0,-235.899	1/1:75:0,75:0:0:75:2676:-241.078,-22.5773,0	1/1:203:0,203:0:0:203:7188:-646.979,-61.1091,0	0/1:58:37,19:37:1330:19:684:-44.6909,0,-102.799	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:150:92,57:92:3276:57:2048:-139.374,0,-249.845	1/1:21:0,21:0:0:21:737:-66.6506,-6.32163,0	0/1:80:47,32:47:1644:32:1144:-79.1284,0,-124.104	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:94:60,32:60:2128:32:1133:-74.2233,0,-163.652	0/1:78:60,16:60:2114:16:576:-28.9369,0,-167.289	1/1:124:0,124:0:0:124:4430:-398.74,-37.3277,0	1/1:89:0,89:0:0:89:3185:-286.872,-26.7917,0
chr11	12198178	.	G	T	32342.3	PASS	AB=0.502831;ABP=3.26849;AC=40;AF=0.212766;AN=188;AO=1874;CIGAR=1X;DP=8103;DPB=8103;DPRA=1.34156;EPP=3858.1;EPPR=13119.6;GTI=0;LEN=1;MEANALT=1.02273;MQM=53.6697;MQMR=56.2961;NS=94;NUMALT=1;ODDS=2.94913;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66978;QR=222612;RO=6227;RPL=1849;RPP=3858.1;RPPR=13119.6;RPR=25;RUN=1;SAF=0;SAP=4072.35;SAR=1874;SRF=0;SRP=13524.8;SRR=6227;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1779:0:0:0,-15.0515,-159.33	0/1:71:40,31:40:1436:31:1112:-78.7496,0,-107.027	0/0:261:261,0:261:9312:0:0:0,-78.5688,-834.916	0/1:289:186,103:186:6642:103:3659:-241.864,0,-509.779	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.56	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.4232	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.394	0/0:158:158,0:158:5668:0:0:0,-47.5627,-509	0/1:91:42,49:42:1496:49:1756:-130.12,0,-106.863	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.001	0/0:43:43,0:43:1527:0:0:0,-12.9443,-137.601	0/1:97:50,47:50:1796:47:1662:-119.917,0,-132.068	0/1:67:33,34:33:1184:34:1220:-89.6558,0,-86.5942	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.9944	0/1:66:31,35:31:1112:35:1260:-93.6313,0,-80.3939	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.111	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.4761	0/1:24:12,12:12:432:12:432:-31.6909,0,-31.9594	0/1:43:24,19:24:864:19:680:-48.2461,0,-64.7319	0/1:124:63,61:63:2235:61:2192:-160.07,0,-163.426	0/0:176:176,0:176:6291:0:0:0,-52.9813,-565.605	0/1:158:50,108:50:1779:108:3863:-299.05,0,-112.675	0/1:79:34,45:34:1220:45:1620:-121.372,0,-86.3113	0/0:75:74,1:74:2652:1:36:0,-19.0562,-234.162	0/0:65:65,0:65:2314:0:0:0,-19.5669,-207.592	0/1:238:113,125:113:4035:125:4463:-328.675,0,-291.588	0/0:288:286,2:286:10232:2:72:0,-79.8696,-911.337	0/0:25:25,0:25:854:0:0:0,-7.52575,-76.9996	0/0:182:182,0:182:6482:0:0:0,-54.7875,-582.962	0/1:154:79,75:79:2828:75:2664:-192.249,0,-207.386	0/0:77:77,0:77:2756:0:0:0,-23.1793,-247.979	0/1:12:6,6:6:212:6:216:-16.1501,0,-15.7347	0/0:27:27,0:27:968:0:0:0,-8.12781,-86.6103	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7106	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5264	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.127	0/1:183:105,77:105:3768:77:2753:-192.352,0,-283.857	0/1:170:75,95:75:2672:95:3393:-253.442,0,-188.758	0/0:59:59,0:59:2124:0:0:0,-17.7608,-190.602	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7648	0/0:97:97,0:97:3488:0:0:0,-29.1999,-313.749	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5334	0/0:116:116,0:116:4156:0:0:0,-34.9195,-373.862	0/0:45:45,0:45:1612:0:0:0,-13.5463,-144.936	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.714	0/1:155:68,87:68:2436:87:3116:-233.58,0,-172.711	0/1:143:85,58:85:3018:58:2074:-142.713,0,-227.993	0/0:177:175,2:175:6235:2:72:0,-46.4505,-553.71	0/0:141:141,0:141:5034:0:0:0,-42.4452,-452.823	0/1:57:28,29:28:1008:29:1021:-74.9496,0,-73.8085	0/0:107:107,0:107:3827:0:0:0,-32.2102,-344.221	0/1:12:8,4:8:284:4:144:-9.69166,0,-22.2745	0/0:140:140,0:140:5016:0:0:0,-42.1442,-449.914	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4634	0/1:8:4,4:4:144:4:144:-10.7715,0,-10.8917	0/1:161:67,94:67:2395:94:3342:-250.846,0,-166.454	0/1:53:24,29:24:864:29:1029:-76.4487,0,-62.028	0/1:8:2,6:2:72:6:216:-17.3619,0,-4.42657	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3454	0/0:33:33,0:33:1164:0:0:0,-9.93399,-104.989	0/1:73:27,46:27:972:46:1652:-126.874,0,-65.6893	0/1:8:2,6:2:72:6:216:-17.368,0,-4.42764	0/1:108:52,56:52:1868:56:2004:-147.634,0,-135.797	0/0:74:74,0:74:2648:0:0:0,-22.2762,-237.329	0/1:52:32,20:32:1144:20:720:-49.3554,0,-87.5659	0/0:95:95,0:95:3395:0:0:0,-28.5978,-305.279	0/1:141:86,55:86:3083:55:1968:-134.8,0,-234.546	0/0:138:134,4:134:4780:4:144:0,-28.2381,-415.752	0/1:42:20,22:20:720:22:792:-57.4885,0,-52.4546	0/0:102:102,0:102:3656:0:0:0,-30.7051,-327.171	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.912	0/1:21:12,9:12:432:9:324:-22.4886,0,-32.8947	0/0:176:175,0:175:6233:0:0:0,-52.6802,-559.584	0/0:135:135,0:135:4812:0:0:0,-40.639,-432.532	0/0:99:99,0:99:3520:0:0:0,-29.802,-316.073	0/1:206:104,102:104:3736:102:3643:-265.575,0,-274.295	0/0:106:106,0:106:3796:0:0:0,-31.9092,-338.566	0/1:62:26,36:26:932:36:1292:-97.5929,0,-65.3378	0/1:19:11,8:11:396:8:288:-20.4818,0,-30.2009	0/1:101:28,73:28:996:73:2593:-201.99,0,-59.5052	0/0:106:106,0:106:3775:0:0:0,-31.9092,-338.581	0/0:161:161,0:161:5768:0:0:0,-48.4658,-518.867	0/1:70:36,34:36:1280:34:1220:-88.1629,0,-94.2949	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.306	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.497	0/1:124:63,61:63:2255:61:2188:-159.239,0,-165.758	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.5404	0/1:65:36,29:36:1279:29:1040:-73.9181,0,-95.3583	0/0:63:63,0:63:2256:0:0:0,-18.9649,-202.992	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.9787	0/1:93:55,38:55:1967:38:1355:-93.6863,0,-147.902	0/1:61:24,37:24:864:37:1328:-101.372,0,-59.6151	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2642	0/0:85:85,0:85:3045:0:0:0,-25.5875,-274.108
chr11	12198201	.	GACC	AACT,GACT	172255	PASS	AB=0.495544,0.502025;ABP=3.6489,3.14224;AC=148,40;AF=0.787234,0.212766;AN=188;AO=6198,1871;CIGAR=1X2M1X,3M1X;DP=8087;DPB=8088;DPRA=0,1.29928;EPP=13461.8,4065.84;EPPR=7.35324;GTI=0;LEN=4,1;MEANALT=1.62766,2.17391;MQM=56.2291,53.7253;MQMR=60;NS=94;NUMALT=2;ODDS=2.20753;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=104,0;PQR=0;PRO=0;QA=219363,67042;QR=72;RO=2;RPL=6198,1871;RPP=13461.8,4065.84;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=13461.8,4065.84;SAR=6198,1871;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,49,1:0:0:49,1:1737,36:-155.271,-14.7505,0,-152.333,-11.4532,-152.032	1/2:71:0,39,32:0:0:39,32:1385,1144:-205.113,-93.3728,-81.6327,-112.094,0,-102.461	1/1:259:0,259,0:0:0:259,0:9185,0:-823.558,-77.9668,0,-823.558,-77.9668,-823.558	1/2:293:0,188,104:0:0:188,104:6660,3729:-844.393,-303.281,-246.688,-541.108,0,-509.801	1/1:49:0,49,0:0:0:49,0:1748,0:-157.377,-14.7505,0,-157.377,-14.7505,-157.377	1/1:15:0,15,0:0:0:15,0:534,0:-48.2439,-4.51545,0,-48.2439,-4.51545,-48.2439	1/1:54:0,54,0:0:0:54,0:1907,0:-171.785,-16.2556,0,-171.785,-16.2556,-171.785	1/1:162:0,162,0:0:0:162,0:5696,0:-511.684,-48.7669,0,-511.684,-48.7669,-511.684	1/2:91:0,42,49:0:0:42,49:1472,1760:-262.246,-142.971,-130.328,-119.627,0,-104.877	1/1:99:0,99,0:0:0:99,0:3473,0:-312.481,-29.802,0,-312.481,-29.802,-312.481	1/1:41:0,41,0:0:0:41,0:1452,0:-130.824,-12.3422,0,-130.824,-12.3422,-130.824	1/2:97:0,50,47:0:0:50,47:1768,1688:-279.634,-136.193,-121.142,-143.794,0,-129.646	1/2:67:0,33,34:0:0:33,34:1159,1224:-193.24,-99.0114,-89.0774,-94.5817,0,-84.3467	1/1:28:0,28,0:0:0:28,0:986,0:-88.9669,-8.42884,0,-88.9669,-8.42884,-88.9669	1/2:65:0,30,35:0:0:30,35:1079,1260:-190.867,-102.963,-93.9323,-88.2628,0,-77.7268	1/1:48:0,46,2:0:0:46,2:1579,72:-141.825,-13.8474,0,-135.95,-7.61272,-135.348	1/1:29:0,29,0:0:0:29,0:1022,0:-92.0933,-8.72987,0,-92.0933,-8.72987,-92.0933	1/2:24:0,12,12:0:0:12,12:425,432:-69.8878,-35.3032,-31.6909,-34.9399,0,-31.3276	1/2:42:0,23,19:0:0:23,19:793,683:-119.765,-55.7365,-48.8128,-64.3793,0,-58.6597	1/2:123:0,62,61:0:0:62,61:2179,2186:-355.2,-178.5,-159.836,-177.055,0,-158.692	1/1:175:0,175,0:0:0:175,0:6194,0:-556.865,-52.6803,0,-556.865,-52.6803,-556.865	1/2:158:0,50,108:0:0:50,108:1763,3854:-456.727,-313.32,-298.268,-143.76,0,-111.249	1/2:81:0,36,44:0:0:36,44:1274,1583:-232.027,-128.273,-117.436,-103.755,0,-90.5093	1/1:78:0,77,1:0:0:77,1:2724,36:-244.13,-23.1793,0,-241.262,-19.9593,-240.961	1/1:66:0,66,0:0:0:66,0:2356,0:-211.43,-19.868,0,-211.43,-19.868,-211.43	1/2:237:0,113,123:0:0:113,123:3986,4416:-682.742,-358.278,-324.262,-324.464,0,-287.438	1/1:290:0,287,2:0:0:287,2:10154,72:-911.467,-86.3956,0,-905.602,-80.5202,-905	1/1:23:0,23,0:0:0:23,0:827,0:-74.5386,-6.92369,0,-74.5386,-6.92369,-74.5386	1/1:183:0,183,0:0:0:183,0:6475,0:-582.382,-55.0885,0,-582.382,-55.0885,-582.382	1/2:153:0,81,71:0:0:81,71:2871,2552:-439.372,-206.515,-182.131,-232.858,0,-211.485	1/1:76:0,76,0:0:0:76,0:2693,0:-242.316,-22.8783,0,-242.316,-22.8783,-242.316	1/2:12:0,6,6:0:0:6,6:206,216:-34.6527,-17.9563,-16.1501,-17.0475,0,-15.2413	1/1:28:0,28,0:0:0:28,0:988,0:-88.4082,-8.42884,0,-88.4082,-8.42884,-88.4082	1/1:10:0,10,0:0:0:10,0:360,0:-32.7106,-3.0103,0,-32.7106,-3.0103,-32.7106	1/1:15:0,15,0:0:0:15,0:526,0:-47.6246,-4.51545,0,-47.6246,-4.51545,-47.6246	1/1:36:0,36,0:0:0:36,0:1271,0:-114.48,-10.8371,0,-114.48,-10.8371,-114.48	1/2:182:0,103,79:0:0:103,79:3678,2844:-531.281,-231.732,-200.726,-299.907,0,-276.126	1/2:168:2,74,92:2:72:74,92:2623,3304:-475.537,-262.632,-246.231,-207.628,0,-185.808	1/1:56:0,56,0:0:0:56,0:1990,0:-178.668,-16.8577,0,-178.668,-16.8577,-178.668	1/1:5:0,5,0:0:0:5,0:167,0:-15.3531,-1.50515,0,-15.3531,-1.50515,-15.3531	1/1:98:0,98,0:0:0:98,0:3501,0:-314.926,-29.5009,0,-314.926,-29.5009,-314.926	1/1:31:0,31,0:0:0:31,0:1093,0:-98.6334,-9.33193,0,-98.6334,-9.33193,-98.6334	1/1:118:0,115,0:0:0:115,0:4056,0:-364.605,-34.6185,0,-364.605,-34.6185,-364.605	1/1:43:0,43,0:0:0:43,0:1518,0:-136.802,-12.9443,0,-136.802,-12.9443,-136.802	1/1:59:0,59,0:0:0:59,0:2098,0:-188.907,-17.7608,0,-188.907,-17.7608,-188.907	1/2:151:0,67,84:0:0:67,84:2368,3024:-439.376,-246.64,-226.471,-193.092,0,-167.805	1/2:145:0,85,59:0:0:85,59:2992,2097:-412.909,-170.093,-144.505,-242.93,0,-225.169	1/1:178:0,176,2:0:0:176,2:6225,72:-559.324,-52.9813,0,-553.454,-46.7515,-552.852	1/1:140:0,140,0:0:0:140,0:4934,0:-443.923,-42.1442,0,-443.923,-42.1442,-443.923	1/2:58:0,30,28:0:0:30,28:1070,1008:-169.562,-82.4434,-73.4125,-87.476,0,-79.0472	1/1:107:0,107,0:0:0:107,0:3817,0:-343.395,-32.2102,0,-343.395,-32.2102,-343.395	1/2:12:0,8,4:0:0:8,4:287,144:-35.4923,-12.0999,-9.69165,-23.7516,0,-22.5475	1/1:138:0,138,0:0:0:138,0:4877,0:-437.778,-41.5421,0,-437.778,-41.5421,-437.778	1/1:24:0,24,0:0:0:24,0:855,0:-77.2508,-7.22472,0,-77.2508,-7.22472,-77.2508	1/2:8:0,5,3:0:0:5,3:179,108:-23.6233,-9.14675,-7.6416,-14.8341,0,-13.931	1/2:161:0,67,93:0:0:67,93:2393,3325:-464.382,-269.672,-249.503,-194.714,0,-166.718	1/2:54:0,25,29:0:0:25,29:882,1025:-155.1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chr11	13013072	.	A	G	129252	PASS	AB=0.477543;ABP=19.2;AC=148;AF=0.787234;AN=188;AO=6684;CIGAR=1X;DP=8632;DPB=8632;DPRA=46.3978;EPP=14343.9;EPPR=4140.11;GTI=2;LEN=1;MEANALT=1.03226;MQM=37.4897;MQMR=50.7075;NS=94;NUMALT=1;ODDS=0.602175;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238535;QR=69713;RO=1945;RPL=6664;RPP=14343.9;RPPR=4140.11;RPR=20;RUN=1;SAF=6684;SAP=14517.1;SAR=0;SRF=1945;SRP=4226.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:61:0,61:0:0:61:2192:-183.849,-18.3628,0	0/1:59:32,27:32:1148:27:968:-64.6392,0,-85.4932	1/1:108:0,108:0:0:108:3859:-325.561,-32.5112,0	0/1:185:90,95:90:3205:95:3387:-225.621,0,-231.413	1/1:45:0,45:0:0:45:1595:-133.457,-13.5464,0	1/1:63:0,63:0:0:63:2252:-188.055,-18.9649,0	1/1:128:0,128:0:0:128:4551:-381.483,-38.5318,0	1/1:139:1,138:1:36:138:4946:-415.92,-38.2539,0	0/1:122:60,62:60:2148:62:2224:-151.547,0,-155.74	1/1:93:0,93:0:0:93:3316:-277.319,-27.9958,0	1/1:31:0,31:0:0:31:1112:-92.8859,-9.33193,0	0/1:89:48,41:48:1728:41:1468:-97.7491,0,-128.409	0/1:69:36,33:36:1284:33:1180:-78.9164,0,-94.6254	1/1:31:0,31:0:0:31:1104:-93.2954,-9.33193,0	0/1:61:37,24:37:1328:24:855:-52.037,0,-100.306	1/1:39:0,39:0:0:39:1388:-116.392,-11.7402,0	1/1:31:0,30:0:0:30:1072:-91.0378,-9.0309,0	0/1:27:9,18:9:324:18:644:-46.8321,0,-21.3039	0/1:29:18,11:18:648:11:396:-24.9062,0,-49.4937	0/1:192:89,103:89:3188:103:3683:-251.24,0,-227.975	1/1:127:0,127:0:0:127:4514:-379.28,-38.2308,0	0/1:162:113,49:113:4048:49:1736:-100.646,0,-313.896	0/1:117:75,42:75:2688:42:1508:-88.1853,0,-205.301	1/1:87:0,87:0:0:87:3084:-258.434,-26.1896,0	1/1:135:0,135:0:0:135:4826:-401.97,-40.6391,0	0/1:229:117,112:117:4192:112:3978:-268.55,0,-306.957	1/1:200:1,199:1:36:199:7132:-590.758,-56.6195,0	1/1:25:0,25:0:0:25:887:-74.579,-7.52575,0	1/1:246:0,245:0:0:245:8747:-746.743,-73.7524,0	0/1:152:81,71:81:2904:71:2526:-165.79,0,-214.55	1/1:97:1,96:1:36:96:3431:-280.718,-25.6169,0	0/1:6:2,4:2:72:4:144:-10.6513,0,-4.97207	1/1:10:0,10:0:0:10:360:-30.6794,-3.0103,0	1/1:4:0,4:0:0:4:144:-12.5341,-1.20412,0	1/1:9:0,9:0:0:9:324:-27.0231,-2.70927,0	1/1:19:0,19:0:0:19:680:-58.0088,-5.71957,0	0/1:185:98,87:98:3524:87:3094:-208.668,0,-260.248	0/1:169:85,84:85:3040:84:3003:-200.849,0,-222.121	1/1:31:0,31:0:0:31:1100:-93.5852,-9.33193,0	1/1:7:0,7:0:0:7:239:-20.6401,-2.10721,0	1/1:131:0,131:0:0:131:4694:-392.839,-39.4349,0	1/1:16:0,16:0:0:16:572:-48.3913,-4.81648,0	1/1:127:0,127:0:0:127:4534:-379.209,-38.2308,0	1/1:52:0,52:0:0:52:1856:-155.813,-15.6536,0	1/1:59:0,59:0:0:59:2107:-177.181,-17.7608,0	0/1:146:85,61:85:3052:61:2167:-142.078,0,-229.631	0/1:171:81,90:81:2896:90:3216:-221.471,0,-208.125	1/1:282:1,281:1:36:281:10025:-831.219,-81.3074,0	1/1:147:0,147:0:0:147:5255:-439.243,-44.2514,0	0/1:115:49,66:49:1756:66:2360:-163.243,0,-122.63	1/1:138:0,138:0:0:138:4936:-420.493,-41.5421,0	1/1:1:0,1:0:0:1:36:-3.34615,-0.30103,0	1/1:85:0,85:0:0:85:3031:-256.486,-25.5876,0	1/1:65:0,65:0:0:65:2310:-197.839,-19.567,0	0/1:19:11,8:11:396:8:284:-18.75,0,-29.6228	0/1:180:89,91:89:3196:91:3248:-217.845,0,-232.102	0/1:55:35,20:35:1260:20:720:-44.0086,0,-96.3636	0/1:9:5,4:5:180:4:144:-9.95806,0,-13.8012	1/1:9:0,9:0:0:9:307:-26.1326,-2.70927,0	1/1:98:0,98:0:0:98:3504:-291.78,-29.5009,0	0/1:82:47,35:47:1692:35:1241:-79.2659,0,-126.998	0/1:11:6,5:6:216:5:180:-12.0809,0,-16.3954	0/1:202:100,102:100:3592:102:3648:-251.603,0,-261.458	1/1:176:2,174:2:72:174:6208:-511.168,-46.1735,0	0/1:61:36,25:36:1288:25:896:-57.0844,0,-97.2444	1/1:78:0,78:0:0:78:2804:-234.344,-23.4803,0	0/1:150:81,69:81:2900:69:2441:-159.993,0,-214.63	1/1:118:2,115:2:72:115:4120:-337.33,-28.7552,0	0/1:34:18,16:18:644:16:576:-38.2841,0,-47.9043	1/1:58:1,57:1:36:57:2048:-170.603,-13.9011,0	1/1:40:0,40:0:0:40:1417:-120.9,-12.0412,0	0/1:10:4,6:4:144:6:212:-15.1502,0,-10.2381	1/1:185:0,185:0:0:185:6599:-557.831,-55.6906,0	1/1:96:0,96:0:0:96:3427:-289.764,-28.8989,0	1/1:137:0,137:0:0:137:4891:-408.606,-41.2411,0	0/1:45:19,26:19:680:26:932:-64.8482,0,-47.7292	1/1:183:2,181:2:72:181:6471:-537.795,-48.269,0	0/1:77:26,51:26:932:51:1816:-130.618,0,-60.8119	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.81953	0/1:103:42,61:42:1504:61:2179:-152.318,0,-104.012	1/1:112:0,112:0:0:112:3999:-336.797,-33.7154,0	1/1:307:0,307:0:0:307:10958:-916.256,-92.4162,0	0/1:48:25,23:25:900:23:824:-53.8515,0,-66.5275	1/1:70:0,70:0:0:70:2498:-210.49,-21.0721,0	1/1:40:0,40:0:0:40:1416:-118.255,-12.0412,0	0/1:133:68,65:68:2436:65:2322:-152.789,0,-177.139	1/1:21:0,21:0:0:21:739:-63.119,-6.32163,0	0/1:52:32,20:32:1140:20:701:-43.7534,0,-85.8847	1/1:72:0,72:0:0:72:2558:-215.391,-21.6742,0	1/1:19:0,19:0:0:19:680:-57.521,-5.71957,0	0/1:66:32,34:32:1136:34:1200:-81.2545,0,-82.2632	0/1:74:50,24:50:1800:24:860:-50.0952,0,-138.615	1/1:148:1,147:1:36:147:5203:-430.896,-40.9694,0	1/1:98:0,98:0:0:98:3516:-291.191,-29.5009,0
chr11	13022548	.	C	T	136067	PASS	AB=0.466209;ABP=39.1116;AC=148;AF=0.787234;AN=188;AO=6358;CIGAR=1X;DP=8308;DPB=8308;DPRA=0;EPP=13774.5;EPPR=4235.21;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9915;MQMR=59.9795;NS=94;NUMALT=1;ODDS=0.581406;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227503;QR=69648;RO=1949;RPL=4;RPP=13774.5;RPPR=4226.53;RPR=6354;RUN=1;SAF=0;SAP=13809.2;SAR=6358;SRF=1;SRP=4226.53;SRR=1948;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	0/1:112:67,45:67:2357:45:1614:-111.835,0,-178.67	1/1:97:0,97:0:0:97:3460:-311.611,-29.1999,0	0/1:133:62,71:62:2232:71:2529:-187.823,0,-161.107	1/1:37:0,37:0:0:37:1317:-118.832,-11.1381,0	1/1:60:0,60:0:0:60:2145:-193.271,-18.0618,0	1/1:141:0,141:0:0:141:5039:-453.655,-42.4452,0	1/1:198:0,198:0:0:198:7043:-633.933,-59.6039,0	0/1:85:31,54:31:1097:54:1940:-149.289,0,-73.4505	1/1:119:0,119:0:0:119:4280:-385.376,-35.8226,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:36:20,16:20:712:16:568:-40.6148,0,-53.5696	0/1:39:17,22:17:608:22:792:-59.8655,0,-43.3119	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:43:21,22:21:747:22:792:-58.6614,0,-54.61	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:44:0,44:0:0:44:1565:-141.14,-13.2453,0	0/1:36:15,21:15:532:21:756:-57.5301,0,-37.376	0/1:19:9,10:9:324:10:360:-27.0247,0,-23.7863	0/1:244:143,101:143:5124:101:3608:-251.473,0,-387.85	1/1:163:0,163:0:0:163:5841:-525.799,-49.0679,0	0/1:103:68,35:68:2425:35:1245:-81.3466,0,-187.498	0/1:124:70,54:70:2482:54:1936:-137.189,0,-186.303	1/1:145:0,145:0:0:145:5185:-466.788,-43.6494,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:361:194,167:194:6968:167:5970:-428.734,0,-518.51	1/1:199:0,199:0:0:199:7156:-644.092,-59.905,0	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	1/1:301:0,301:0:0:301:10758:-968.124,-90.61,0	0/1:129:49,80:49:1721:80:2843:-217.275,0,-116.337	1/1:113:0,113:0:0:113:4052:-364.867,-34.0164,0	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/1:133:75,58:75:2692:58:2084:-147.793,0,-202.487	0/1:203:108,95:108:3872:95:3408:-245.824,0,-287.565	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:135:0,135:0:0:135:4838:-435.572,-40.6391,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:144:0,144:0:0:144:5132:-462.014,-43.3483,0	1/1:39:0,39:0:0:39:1386:-125.039,-11.7402,0	1/1:42:0,42:0:0:42:1496:-134.933,-12.6433,0	0/1:82:42,40:42:1512:40:1436:-104.853,0,-111.69	0/1:110:63,47:63:2264:47:1688:-119.094,0,-170.909	1/1:221:0,221:0:0:221:7871:-708.414,-66.5276,0	1/1:110:0,110:0:0:110:3926:-353.53,-33.1133,0	0/1:137:74,63:74:2652:63:2248:-161.342,0,-197.685	1/1:140:0,140:0:0:140:5024:-452.305,-42.1442,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:130:1,129:1:36:129:4644:-414.521,-35.5356,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:114:71,43:71:2548:43:1548:-105.296,0,-195.253	0/1:48:15,33:15:536:33:1173:-91.4261,0,-34.1254	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	0/1:88:52,36:52:1844:36:1281:-89.1006,0,-139.747	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:240:125,115:125:4470:115:4132:-299.815,0,-330.221	1/1:235:1,234:1:36:234:8358:-748.627,-67.1438,0	0/1:104:41,63:41:1468:63:2260:-172.355,0,-101.109	1/1:74:0,74:0:0:74:2637:-237.576,-22.2762,0	0/1:150:72,78:72:2579:78:2792:-206.366,0,-187.204	1/1:98:3,95:3:108:95:3408:-296.856,-19.4258,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:62:0,62:0:0:62:2215:-199.614,-18.6639,0	1/1:80:0,80:0:0:80:2880:-259.436,-24.0824,0	0/1:18:11,7:11:381:7:247:-17.1544,0,-29.2021	1/1:108:0,108:0:0:108:3875:-348.935,-32.5112,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:164:0,164:0:0:164:5859:-527.42,-49.3689,0	0/1:193:100,93:100:3581:93:3340:-242.718,0,-264.396	1/1:91:1,90:1:36:90:3217:-286.135,-23.7955,0	0/1:96:58,38:58:2065:38:1368:-94.522,0,-157.22	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:112:73,39:73:2605:39:1395:-92.1338,0,-200.981	1/1:117:0,117:0:0:117:4166:-375.121,-35.2205,0	1/1:242:0,242:0:0:242:8679:-781.099,-72.8493,0	0/1:81:43,38:43:1539:38:1368:-99.0374,0,-114.419	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:51:0,51:0:0:51:1812:-163.359,-15.3525,0	0/1:100:66,34:66:2352:34:1220:-80.0038,0,-181.836	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:61:34,27:34:1220:27:968:-69.0745,0,-90.8053	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:38:16,22:16:559:22:790:-59.9862,0,-39.1985	0/1:30:22,8:22:792:8:288:-17.2365,0,-62.5748	1/1:134:0,134:0:0:134:4774:-429.816,-40.338,0	1/1:54:0,53:0:0:53:1908:-171.638,-15.9546,0
chr11	13125168	.	ATT	ATC	72404.6	PASS	AB=0.475895;ABP=13.5837;AC=145;AF=0.77957;AN=186;AO=3424;CIGAR=2M1X;DP=4548;DPB=4548;DPRA=12.4725;EPP=7429.45;EPPR=2409;GTI=1;LEN=1;MEANALT=1.15385;MQM=59.9892;MQMR=59.9738;NS=93;NUMALT=1;ODDS=2.28194;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122457;QR=39244;RO=1108;RPL=1;RPP=7429.45;RPPR=2409;RPR=3423;RUN=1;SAF=0;SAP=7438.13;SAR=3424;SRF=0;SRP=2409;SRR=1108;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:65:30,35:30:1061:35:1260:-94.1385,0,-76.2341	1/1:42:1,41:1:34:41:1468:-129.017,-9.24435,0	0/1:74:37,37:37:1323:37:1332:-97.9062,0,-97.0959	1/1:42:0,42:0:0:42:1493:-134.663,-12.6433,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:34:0,33:0:0:33:1188:-106.869,-9.93399,0	1/1:29:0,28:0:0:28:1008:-90.7633,-8.42884,0	0/1:50:23,27:23:824:27:968:-72.3859,0,-59.432	1/1:54:0,54:0:0:54:1921:-173.165,-16.2556,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/1:38:20,18:20:713:18:648:-47.2127,0,-53.0549	1/1:34:0,34:0:0:34:1197:-108.033,-10.235,0	0/1:27:13,14:13:468:14:496:-36.8464,0,-34.3318	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:22:15,7:15:525:7:252:-16.4063,0,-40.9568	0/1:25:15,9:15:536:9:320:-21.5583,0,-40.9906	0/1:77:36,41:36:1291:41:1476:-109.957,0,-93.3146	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	0/1:39:27,12:27:962:12:426:-26.9372,0,-75.1569	0/1:29:12,16:12:423:16:576:-43.5189,0,-29.7482	1/1:58:0,58:0:0:58:2052:-184.949,-17.4597,0	1/1:59:0,59:0:0:59:2102:-189.447,-17.7608,0	0/1:311:152,158:152:5392:158:5645:-414.637,0,-391.883	1/1:89:0,88:0:0:88:3158:-284.163,-26.4906,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:148:0,148:0:0:148:5273:-474.705,-44.5524,0	0/1:68:40,28:40:1420:28:1000:-69.8453,0,-107.626	1/1:56:0,56:0:0:56:1982:-178.654,-16.8577,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:123:69,54:69:2461:54:1925:-136.498,0,-184.717	0/1:164:90,74:90:3160:74:2644:-188.838,0,-235.256	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:78:1,77:1:36:77:2742:-243.424,-19.8821,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:45:0,42:0:0:42:1512:-136.04,-12.6433,0	0/1:105:63,42:63:2241:42:1512:-104.766,0,-170.345	0/1:46:28,18:28:974:18:644:-44.4432,0,-74.1217	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	1/1:70:0,70:0:0:70:2497:-224.981,-21.0721,0	0/1:60:31,29:31:1106:29:1044:-76.213,0,-81.7886	1/1:109:0,108:0:0:108:3849:-346.246,-32.5112,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.078	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:8:7,1:7:250:1:36:-1.19004,0,-20.4384	0/1:41:15,26:15:530:26:928:-71.496,0,-35.6895	0/1:36:20,16:20:699:16:572:-40.9763,0,-52.3953	.:.:.:.:.:.:.:.	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:17:1,16:1:36:16:557:-46.8573,-1.51924,0	0/1:90:41,49:41:1447:49:1756:-131.231,0,-103.421	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:48:25,23:25:857:23:828:-60.3947,0,-62.9908	1/1:138:2,134:2:72:134:4801:-425.46,-34.4083,0	0/1:28:16,12:16:568:12:432:-30.7924,0,-43.0225	1/1:20:0,20:0:0:20:701:-63.4117,-6.0206,0	0/1:105:56,48:56:1983:48:1716:-123.137,0,-147.155	1/1:71:2,69:2:72:69:2472:-215.897,-14.5364,0	0/1:12:5,6:5:180:6:216:-16.1194,0,-12.8809	1/1:59:0,59:0:0:59:2114:-190.529,-17.7608,0	1/1:39:0,38:0:0:38:1338:-120.434,-11.4391,0	0/1:7:2,5:2:70:5:180:-14.4449,0,-4.54012	1/1:81:0,81:0:0:81:2896:-260.874,-24.3834,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:69:0,69:0:0:69:2463:-221.921,-20.7711,0	0/1:40:19,21:19:675:21:752:-55.9651,0,-49.0358	1/1:63:0,63:0:0:63:2266:-204.202,-18.9649,0	0/1:41:16,25:16:568:25:861:-65.4576,0,-39.1091	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:22:15,7:15:525:7:252:-16.4063,0,-40.9554	1/1:31:0,30:0:0:30:1076:-96.8994,-9.0309,0	1/1:106:0,106:0:0:106:3796:-341.838,-31.9092,0	0/1:75:30,45:30:1059:45:1597:-121.442,0,-73.0428	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:60:28,32:28:986:32:1148:-85.568,0,-70.9914	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:48:29,19:29:1034:19:684:-47.4409,0,-78.9215	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:38:18,20:18:644:20:720:-53.6896,0,-46.8517	0/1:33:28,5:28:963:5:180:-6.61808,0,-77.0428	1/1:51:0,51:0:0:51:1829:-164.891,-15.3525,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0
chr11	13333022	.	C	G	65278.9	PASS	AB=0.494572;ABP=3.85898;AC=150;AF=0.797872;AN=188;AO=5610;CIGAR=1X;DP=7297;DPB=7297;DPRA=0;EPP=12185;EPPR=3659.77;GTI=3;LEN=1;MEANALT=1.01064;MQM=25.5271;MQMR=59.421;NS=94;NUMALT=1;ODDS=0.0327651;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200441;QR=60008;RO=1684;RPL=5610;RPP=12185;RPPR=3659.77;RPR=0;RUN=1;SAF=5610;SAP=12185;SAR=0;SRF=1684;SRP=3659.77;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62:0:0:62:2212:-127.501,-18.6639,0	0/1:104:50,54:50:1777:54:1944:-79.926,0,-128.893	1/1:101:0,101:0:0:101:3619:-209.008,-30.404,0	0/1:160:68,92:68:2423:92:3280:-170.841,0,-170.137	1/1:90:0,90:0:0:90:3232:-199.306,-27.0927,0	1/1:64:0,64:0:0:64:2288:-131.035,-19.2659,0	1/1:113:0,113:0:0:113:4060:-268.952,-34.0164,0	1/1:103:2,101:2:72:101:3607:-200.12,-24.1694,0	0/1:94:32,62:32:1133:62:2198:-98.4449,0,-73.9574	1/1:72:0,72:0:0:72:2580:-170.723,-21.6742,0	1/1:27:0,27:0:0:27:964:-64.5034,-8.12781,0	0/1:53:26,27:26:923:27:968:-39.6225,0,-67.0915	0/1:46:24,22:24:860:22:784:-31.7007,0,-63.8413	1/1:40:0,40:0:0:40:1424:-89.9269,-12.0412,0	0/1:48:22,26:22:792:26:936:-47.6284,0,-57.1179	1/1:29:0,29:0:0:29:1044:-64.8762,-8.72987,0	1/1:46:0,46:0:0:46:1637:-94.1939,-13.8474,0	0/1:22:10,12:10:356:12:432:-18.303,0,-25.7586	0/1:36:23,13:23:820:13:451:-15.8865,0,-63.2854	0/1:240:105,135:105:3760:135:4832:-249.396,0,-266.265	1/1:104:1,103:1:36:103:3684:-224.233,-27.7088,0	0/1:162:118,44:118:4227:44:1580:-56.9882,0,-331.62	0/1:41:22,19:22:759:19:684:-33.0492,0,-56.2735	1/1:53:0,53:0:0:53:1884:-117.167,-15.9546,0	1/1:80:0,80:0:0:80:2846:-176.406,-24.0824,0	0/1:273:138,135:138:4959:135:4828:-239.116,0,-364.25	1/1:178:0,178:0:0:178:6370:-393.22,-53.5833,0	1/1:26:0,26:0:0:26:936:-57.9723,-7.82678,0	1/1:258:1,257:1:36:257:9209:-608.739,-74.0675,0	0/1:44:19,25:19:684:25:900:-42.3368,0,-48.6308	1/1:71:1,67:1:32:67:2397:-156.535,-17.5769,0	0/1:3:2,1:2:72:1:36:-1.56382,0,-5.93363	1/1:14:0,14:0:0:14:500:-31.5325,-4.21442,0	1/1:6:0,6:0:0:6:216:-12.3575,-1.80618,0	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	0/1:169:89,80:89:3165:80:2814:-138.968,0,-234.173	0/1:176:71,105:71:2534:105:3760:-178.508,0,-175.274	1/1:30:0,30:0:0:30:1026:-61.3718,-9.0309,0	1/1:6:0,6:0:0:6:216:-13.568,-1.80618,0	1/1:110:0,110:0:0:110:3937:-243.812,-33.1133,0	1/1:26:0,26:0:0:26:936:-57.8023,-7.82678,0	1/1:113:0,113:0:0:113:4002:-247.989,-34.0164,0	1/1:47:0,47:0:0:47:1680:-112.816,-14.1484,0	1/1:37:0,37:0:0:37:1303:-87.6046,-11.1381,0	0/1:50:20,30:20:711:30:1076:-56.8868,0,-49.256	0/1:145:70,75:70:2492:75:2672:-109.954,0,-180.542	1/1:186:0,186:0:0:186:6671:-443.36,-55.9916,0	1/1:120:0,120:0:0:120:4282:-283.346,-36.1236,0	0/1:116:66,50:66:2360:50:1781:-83.8893,0,-176.837	1/1:134:1,133:1:36:133:4768:-313.235,-36.7397,0	1/1:1:0,1:0:0:1:36:-2.6486,-0.30103,0	1/1:155:0,155:0:0:155:5564:-317.848,-46.6597,0	1/1:7:0,7:0:0:7:237:-16.3611,-2.10721,0	0/1:6:1,5:1:36:5:180:-8.6766,0,-1.79209	0/1:126:66,60:66:2333:60:2151:-95.199,0,-172.245	0/1:38:14,24:14:489:24:845:-45.1832,0,-32.8915	0/1:8:3,5:3:108:5:180:-9.77532,0,-7.66693	1/1:16:0,16:0:0:16:568:-38.1173,-4.81648,0	1/1:38:0,38:0:0:38:1360:-84.5324,-11.4391,0	0/1:114:65,49:65:2271:49:1747:-82.0958,0,-170.307	1/1:2:0,2:0:0:2:68:-4.968,-0.60206,0	0/1:176:73,103:73:2593:103:3661:-191.365,0,-180.612	1/1:85:0,85:0:0:85:3024:-201.894,-25.5876,0	0/1:47:23,24:23:815:24:860:-39.3421,0,-59.503	1/1:65:0,65:0:0:65:2313:-154.443,-19.567,0	0/1:170:98,72:98:3513:72:2555:-119.706,0,-265.129	1/1:79:1,78:1:36:78:2777:-182.151,-20.1831,0	0/1:6:2,4:2:72:4:144:-7.32137,0,-5.03054	1/1:55:0,55:0:0:55:1972:-112.977,-16.5567,0	1/1:78:0,78:0:0:78:2779:-184.929,-23.4803,0	0/1:11:8,3:8:288:3:104:-4.04154,0,-22.9561	1/1:106:1,105:1:36:105:3759:-211.73,-28.3357,0	1/1:42:0,42:0:0:42:1512:-86.448,-12.6433,0	1/1:122:0,122:0:0:122:4345:-269.458,-36.7257,0	0/1:143:75,68:75:2683:68:2440:-118.77,0,-198.383	1/1:109:0,109:0:0:109:3884:-222.694,-32.8123,0	0/1:68:36,32:36:1287:32:1144:-44.997,0,-95.615	0/1:8:4,4:4:144:4:144:-6.02356,0,-10.9054	0/1:43:28,15:28:1008:15:528:-20.1545,0,-78.0783	1/1:104:0,104:0:0:104:3732:-213.285,-31.3071,0	1/1:231:0,231:0:0:231:8292:-549.997,-69.5379,0	0/1:96:54,42:54:1899:42:1508:-71.4219,0,-142.258	1/1:23:0,23:0:0:23:824:-54.8653,-6.92369,0	1/1:47:0,47:0:0:47:1668:-111.934,-14.1484,0	0/1:111:54,57:54:1927:57:2048:-102.499,0,-140.235	1/1:36:0,36:0:0:36:1287:-73.7778,-10.8371,0	0/1:66:37,29:37:1332:29:1036:-40.0367,0,-100.246	1/1:49:0,49:0:0:49:1752:-100.723,-14.7505,0	1/1:18:0,18:0:0:18:639:-40.0486,-5.41854,0	0/1:42:18,24:18:644:24:864:-40.8886,0,-45.6473	0/1:55:42,13:42:1475:13:468:-14.6968,0,-116.468	1/1:95:0,95:0:0:95:3393:-226.654,-28.5979,0	1/1:70:0,70:0:0:70:2491:-167.196,-21.0721,0
chr11	13333035	.	A	C	65203.6	PASS	AB=0.499696;ABP=3.01294;AC=150;AF=0.797872;AN=188;AO=5620;CIGAR=1X;DP=7281;DPB=7281;DPRA=0;EPP=12206.7;EPPR=3596.8;GTI=2;LEN=1;MEANALT=1.02128;MQM=25.5217;MQMR=59.3647;NS=94;NUMALT=1;ODDS=0.526292;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=200008;QR=58603;RO=1659;RPL=5620;RPP=12206.7;RPPR=3596.8;RPR=0;RUN=1;SAF=5620;SAP=12206.7;SAR=0;SRF=1659;SRP=3605.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:0,64:0:0:64:2264:-131,-19.2659,0	0/1:107:51,56:51:1807:56:1985:-82.6414,0,-130.69	1/1:100:0,100:0:0:100:3583:-206.943,-30.103,0	0/1:162:69,93:69:2445:93:3340:-173.429,0,-171.501	1/1:88:0,88:0:0:88:3135:-194.54,-26.4906,0	1/1:65:0,65:0:0:65:2323:-133.029,-19.567,0	1/1:116:0,116:0:0:116:4122:-275.033,-34.9195,0	1/1:103:2,101:2:72:101:3582:-199.501,-24.1694,0	0/1:95:34,61:34:1197:61:2176:-96.8563,0,-79.3907	1/1:75:0,75:0:0:75:2629:-176.385,-22.5773,0	1/1:28:0,28:0:0:28:987:-66.6008,-8.42884,0	0/1:52:25,27:25:867:27:964:-39.8963,0,-62.6688	0/1:46:24,22:24:852:22:784:-31.7007,0,-63.1199	1/1:40:0,40:0:0:40:1419:-89.8068,-12.0412,0	0/1:49:22,27:22:792:27:968:-49.65,0,-56.8169	1/1:29:0,29:0:0:29:1017:-64.2579,-8.72987,0	1/1:46:0,46:0:0:46:1644:-94.4914,-13.8474,0	0/1:19:7,12:7:248:12:420:-19.1176,0,-16.9446	0/1:36:23,13:23:820:13:468:-16.0535,0,-63.2854	0/1:243:104,139:104:3671:139:4943:-257.065,0,-257.342	1/1:104:1,103:1:36:103:3673:-223.813,-27.7088,0	0/1:156:112,44:112:3947:44:1568:-57.9443,0,-308.053	0/1:44:25,19:25:865:19:684:-32.1461,0,-64.9015	1/1:53:0,53:0:0:53:1900:-117.496,-15.9546,0	1/1:79:0,79:0:0:79:2832:-175.195,-23.7814,0	0/1:270:136,134:136:4828:134:4740:-236.232,0,-353.363	1/1:177:0,177:0:0:177:6328:-391.155,-53.2823,0	1/1:26:0,26:0:0:26:928:-57.8897,-7.82678,0	1/1:256:2,254:2:68:254:9086:-598.681,-70.6977,0	0/1:44:19,25:19:672:25:888:-42.2269,0,-47.5476	1/1:70:0,70:0:0:70:2497:-166.722,-21.0721,0	0/1:3:2,1:2:72:1:36:-1.56382,0,-5.93363	1/1:14:0,14:0:0:14:504:-31.574,-4.21442,0	1/1:6:0,6:0:0:6:212:-12.3396,-1.80618,0	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	1/1:1:0,1:0:0:1:36:-2.27887,-0.30103,0	0/1:167:85,82:85:3003:82:2905:-145.004,0,-220.213	0/1:178:70,108:70:2476:108:3838:-183.621,0,-169.465	1/1:28:0,28:0:0:28:996:-58.0794,-8.42884,0	1/1:6:0,6:0:0:6:212:-13.5261,-1.80618,0	1/1:110:1,109:1:21:109:3846:-238.193,-31.0187,0	1/1:26:0,26:0:0:26:924:-57.6784,-7.82678,0	1/1:114:0,114:0:0:114:4024:-250.408,-34.3174,0	1/1:48:0,48:0:0:48:1703:-113.743,-14.4494,0	1/1:36:0,36:0:0:36:1255:-84.7175,-10.8371,0	0/1:52:19,33:19:672:33:1184:-63.4484,0,-45.1451	0/1:141:67,74:67:2375:74:2622:-109.193,0,-171.483	1/1:185:2,183:2:72:183:6533:-427.593,-49.1857,0	1/1:121:0,121:0:0:121:4312:-285.95,-36.4246,0	0/1:110:63,47:63:2240:47:1664:-78.3194,0,-168.552	1/1:134:1,133:1:36:133:4745:-312.623,-36.7397,0	1/1:1:0,1:0:0:1:36:-2.6486,-0.30103,0	1/1:153:0,153:0:0:153:5452:-313.166,-46.0576,0	1/1:7:0,7:0:0:7:252:-16.951,-2.10721,0	0/1:6:1,5:1:36:5:180:-8.6766,0,-1.79209	0/1:126:66,60:66:2329:60:2138:-94.9966,0,-171.655	0/1:38:14,24:14:491:24:856:-45.5844,0,-33.0738	0/1:7:2,5:2:72:5:180:-10.0763,0,-4.72951	1/1:16:0,16:0:0:16:572:-38.1787,-4.81648,0	1/1:39:0,39:0:0:39:1385:-86.3322,-11.7402,0	0/1:110:62,47:62:2190:47:1667:-78.5904,0,-164.216	1/1:2:0,2:0:0:2:72:-5.03234,-0.60206,0	0/1:174:73,101:73:2600:101:3601:-187.986,0,-181.846	1/1:84:0,84:0:0:84:2977:-199.266,-25.2865,0	0/1:47:23,24:23:816:24:860:-39.3421,0,-59.5858	1/1:66:0,66:0:0:66:2338:-156.306,-19.868,0	0/1:169:96,73:96:3407:73:2607:-123.075,0,-255.928	1/1:79:1,78:1:36:78:2772:-182.415,-20.1831,0	0/1:6:2,4:2:72:4:144:-7.32137,0,-5.03054	1/1:55:0,55:0:0:55:1948:-112.514,-16.5567,0	1/1:77:0,77:0:0:77:2735:-182.403,-23.1793,0	0/1:11:8,3:8:284:3:108:-4.10475,0,-22.592	1/1:112:1,110:1:36:110:3909:-221.745,-30.1335,0	1/1:44:0,44:0:0:44:1555:-90.1385,-13.2453,0	1/1:124:0,124:0:0:124:4376:-273.707,-37.3277,0	0/1:142:74,68:74:2591:68:2410:-117.908,0,-190.533	1/1:107:0,107:0:0:107:3812:-218.601,-32.2102,0	0/1:67:36,31:36:1280:31:1108:-43.247,0,-95.267	0/1:8:4,4:4:144:4:144:-6.02356,0,-10.9054	0/1:42:28,14:28:972:14:504:-18.5159,0,-75.1266	1/1:103:1,102:1:36:102:3629:-205.218,-27.4129,0	1/1:232:0,232:0:0:232:8277:-551.251,-69.839,0	0/1:95:53,42:53:1892:42:1495:-71.437,0,-141.941	1/1:24:0,24:0:0:24:851:-56.8595,-7.22472,0	1/1:47:0,47:0:0:47:1684:-112.178,-14.1484,0	0/1:111:54,57:54:1894:57:2035:-102.233,0,-137.137	1/1:37:0,37:0:0:37:1324:-75.8862,-11.1381,0	0/1:65:36,29:36:1275:29:1044:-40.3921,0,-95.4389	1/1:46:0,46:0:0:46:1640:-94.5432,-13.8474,0	1/1:18:0,18:0:0:18:640:-40.1278,-5.41854,0	0/1:43:18,25:18:608:25:896:-42.9775,0,-42.092	0/1:53:40,13:40:1388:13:464:-15.2374,0,-109.243	1/1:96:0,96:0:0:96:3420:-228.65,-28.8989,0	1/1:69:0,69:0:0:69:2447:-164.69,-20.7711,0
chr11	13936966	.	A	G	33146.2	PASS	AB=0.570423;ABP=100.879;AC=45;AF=0.241935;AN=186;AO=1786;CIGAR=1X;DP=5195;DPB=5195;DPRA=1.64834;EPP=3881.26;EPPR=7405.56;GTI=8;LEN=1;MEANALT=1;MQM=59.4686;MQMR=59.9314;NS=93;NUMALT=1;ODDS=1.55547;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63701;QR=122250;RO=3409;RPL=0;RPP=3881.26;RPPR=7405.56;RPR=1786;RUN=1;SAF=1786;SAP=3881.26;SAR=0;SRF=3409;SRP=7405.56;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:50:21,29:21:756:29:1031:-78.0348,0,-53.3157	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.635	0/1:59:31,28:31:1112:28:986:-71.2899,0,-82.6306	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.034	0/1:45:19,26:19:684:26:932:-70.6492,0,-48.344	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.207	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.579	0/1:54:22,32:22:788:32:1129:-85.6609,0,-54.9892	0/1:51:26,25:26:936:25:892:-65.2334,0,-69.2069	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:34:16,18:16:576:18:640:-47.5878,0,-41.94	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:34:24,10:24:864:10:360:-22.5093,0,-67.8475	0/1:73:11,62:11:392:62:2228:-178.791,0,-13.6449	0/1:71:43,28:43:1544:28:1008:-69.6632,0,-117.88	0/0:61:60,1:60:2156:1:36:0,-14.7646,-190.698	0/1:69:19,50:19:680:50:1788:-140.272,0,-40.7581	0/1:41:25,16:25:896:16:576:-39.819,0,-68.6181	0/0:69:68,1:68:2421:1:36:0,-17.1728,-214.546	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:146:71,75:71:2548:75:2685:-197.889,0,-185.62	0/0:105:104,1:104:3732:1:36:0,-28.0099,-332.482	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9877	0/0:112:112,0:112:4028:0:0:0,-33.7154,-362.429	0/1:78:32,46:32:1148:46:1648:-125.128,0,-80.1495	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.036	1/1:93:1,92:1:36:92:3296:-293.23,-24.3975,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:143:75,68:75:2700:68:2421:-175.045,0,-200.196	0/1:75:33,42:33:1188:42:1493:-112.043,0,-84.6452	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	.:.:.:.:.:.:.:.	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:54:30,24:30:1076:24:860:-61.4662,0,-80.8972	0/1:35:22,13:22:792:13:468:-31.9098,0,-61.0696	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.472	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:73:36,37:36:1296:37:1305:-95.7742,0,-94.9687	0/0:114:114,0:114:4070:0:0:0,-34.3174,-366.455	0/1:73:8,65:8:288:65:2316:-186.578,0,-4.29222	0/0:65:65,0:65:2305:0:0:0,-19.5669,-207.71	0/0:26:25,1:25:900:1:36:0,-4.2285,-77.7227	1/1:132:5,127:5:180:127:4477:-386.509,-23.1839,0	0/1:26:9,17:9:324:17:612:-47.576,0,-21.6791	0/1:33:12,21:12:432:21:752:-58.0552,0,-29.2872	1/1:43:2,41:2:72:41:1467:-125.489,-6.10757,0	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:55:25,30:25:900:30:1076:-80.5962,0,-64.7506	1/1:54:0,54:0:0:54:1940:-174.862,-16.2556,0	0/1:69:53,16:53:1908:16:561:-30.0281,0,-151.226	0/0:125:123,2:123:4400:2:72:0,-30.792,-389.336	0/1:41:21,20:21:752:20:716:-52.4139,0,-55.6617	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:70:36,34:36:1292:34:1224:-89.3812,0,-95.5117	0/0:52:52,0:52:1848:0:0:0,-15.6536,-166.6	0/1:63:8,55:8:288:55:1947:-156.461,0,-7.30252	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:74:7,67:7:252:67:2387:-192.719,0,-0.752739	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.169	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.735	0/1:54:32,22:32:1144:22:767:-53.0745,0,-87.0139	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.006	0/1:32:23,9:23:824:9:320:-19.5094,0,-64.7942	1/1:174:4,170:4:144:170:6092:-534.952,-39.0656,0	0/1:41:22,19:22:788:19:684:-49.5374,0,-58.9026	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:67:34,33:34:1224:33:1167:-85.1536,0,-90.298	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.103	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/1:99:56,43:56:2008:43:1536:-108.671,0,-151.191	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:77:40,37:40:1432:37:1315:-95.4498,0,-105.998	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:182:23,159:23:824:159:5684:-456.554,0,-19.6959	0/1:31:11,20:11:392:20:699:-53.8926,0,-26.2881	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:46:46,0:46:1641:0:0:0,-13.8474,-147.96
chr11	14306799	.	C	T	133264	PASS	AB=0.510589;ABP=6.36736;AC=146;AF=0.776596;AN=188;AO=6208;CIGAR=1X;DP=7909;DPB=7909;DPRA=34.3652;EPP=13189.8;EPPR=3573.91;GTI=0;LEN=1;MEANALT=1.01087;MQM=59.9852;MQMR=59.9994;NS=94;NUMALT=1;ODDS=0.00220501;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220701;QR=60662;RO=1700;RPL=6174;RPP=13189.8;RPPR=3573.91;RPR=34;RUN=1;SAF=0;SAP=13483.5;SAR=6208;SRF=0;SRP=3694.51;SRR=1700;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1417:-127.827,-12.0412,0	0/1:44:15,29:15:540:29:1017:-78.5945,0,-35.6912	1/1:120:0,120:0:0:120:4272:-384.658,-36.1236,0	0/1:93:36,57:36:1284:57:2044:-156.236,0,-87.8676	1/1:33:1,32:1:36:32:1140:-99.3109,-6.33572,0	1/1:32:0,32:0:0:32:1121:-101.196,-9.63296,0	1/1:85:0,85:0:0:85:3029:-272.84,-25.5876,0	1/1:98:0,98:0:0:98:3484:-313.773,-29.5009,0	0/1:80:39,41:39:1388:41:1434:-105.269,0,-101.137	1/1:63:0,63:0:0:63:2233:-201.233,-18.9649,0	1/1:129:0,129:0:0:129:4608:-414.885,-38.8329,0	0/1:79:40,39:40:1407:39:1400:-102.518,0,-103.145	0/1:89:36,53:36:1274:53:1892:-143.767,0,-88.1698	1/1:106:0,106:0:0:106:3775:-339.95,-31.9092,0	0/1:71:31,40:31:1112:40:1411:-105.913,0,-79.0182	1/1:61:2,59:2:72:59:2112:-183.512,-11.5261,0	1/1:74:1,73:1:36:73:2582:-229.031,-18.6779,0	0/1:51:24,27:24:860:27:966:-71.9047,0,-62.3693	0/1:72:37,35:37:1320:35:1226:-88.9681,0,-97.4278	0/1:117:45,72:45:1612:72:2576:-196.869,0,-110.15	1/1:96:0,96:0:0:96:3432:-309.094,-28.8989,0	0/1:63:36,27:36:1292:27:953:-67.1184,0,-97.6189	0/1:66:36,30:36:1267:30:1068:-76.5641,0,-94.4639	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	1/1:62:1,61:1:36:61:2157:-190.798,-15.0656,0	0/1:193:85,108:85:3013:108:3828:-286.622,0,-213.302	1/1:189:0,189:0:0:189:6726:-605.41,-56.8947,0	1/1:36:0,36:0:0:36:1271:-114.693,-10.8371,0	1/1:208:0,208:0:0:208:7384:-664.613,-62.6142,0	0/1:114:48,66:48:1720:66:2295:-172.491,0,-120.768	1/1:139:0,139:0:0:139:4923:-443.224,-41.8432,0	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	1/1:27:0,27:0:0:27:940:-84.9108,-8.12781,0	1/1:12:0,12:0:0:12:420:-38.134,-3.61236,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	0/1:231:118,113:118:4232:113:4036:-293.891,0,-311.521	0/1:157:81,76:81:2896:76:2728:-198.501,0,-213.615	1/1:92:0,92:0:0:92:3253:-292.99,-27.6948,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:91:0,91:0:0:91:3237:-291.551,-27.3937,0	1/1:104:1,103:1:36:103:3624:-322.771,-27.7088,0	1/1:131:0,131:0:0:131:4671:-420.553,-39.4349,0	1/1:89:0,89:0:0:89:3184:-286.784,-26.7917,0	1/1:72:0,72:0:0:72:2559:-230.56,-21.6742,0	0/1:103:40,63:40:1420:63:2222:-169.235,0,-97.0913	0/1:69:33,36:33:1184:36:1276:-94.3714,0,-86.0972	1/1:81:0,81:0:0:81:2856:-257.278,-24.3834,0	1/1:113:0,113:0:0:113:4002:-360.372,-34.0164,0	0/1:117:60,57:60:2151:57:2032:-147.932,0,-158.636	1/1:91:0,91:0:0:91:3248:-292.542,-27.3937,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:135:0,135:0:0:135:4802:-432.338,-40.6391,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:15:11,4:11:392:4:144:-8.79817,0,-31.1046	0/1:108:49,59:49:1743:59:2105:-157.208,0,-124.642	0/1:40:21,19:21:752:19:657:-47.4077,0,-55.9651	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:96:0,96:0:0:96:3420:-308.015,-28.8989,0	0/1:166:81,85:81:2879:85:3040:-223.859,0,-209.376	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:116:49,66:49:1741:66:2372:-178.759,0,-121.994	1/1:123:0,123:0:0:123:4408:-396.892,-37.0267,0	0/1:67:32,35:32:1148:35:1233:-91.1031,0,-83.4608	1/1:55:0,55:0:0:55:1942:-175.056,-16.5567,0	0/1:143:67,76:67:2387:76:2688:-199.118,0,-172.04	1/1:86:0,86:0:0:86:3070:-276.529,-25.8886,0	0/1:86:45,41:45:1604:41:1460:-105.807,0,-118.762	1/1:68:0,68:0:0:68:2423:-218.326,-20.47,0	1/1:66:0,66:0:0:66:2341:-210.949,-19.868,0	0/1:27:19,8:19:667:8:284:-17.7755,0,-52.2268	1/1:142:0,142:0:0:142:5060:-455.524,-42.7463,0	1/1:69:0,69:0:0:69:2426:-218.594,-20.7711,0	1/1:160:0,160:0:0:160:5680:-511.323,-48.1648,0	0/1:85:47,38:47:1688:38:1364:-97.4732,0,-126.619	1/1:96:3,93:3:104:93:3299:-287.428,-19.1961,0	0/1:73:43,30:43:1548:30:1068:-74.4569,0,-117.638	0/1:12:7,5:7:252:5:165:-11.5612,0,-19.4166	0/1:89:44,45:44:1575:45:1582:-115.876,0,-115.249	1/1:55:0,55:0:0:55:1959:-176.585,-16.5567,0	1/1:168:0,168:0:0:168:5976:-537.903,-50.573,0	0/1:80:45,35:45:1600:35:1260:-89.6231,0,-120.208	1/1:86:0,86:0:0:86:3065:-276.079,-25.8886,0	1/1:72:0,72:0:0:72:2572:-231.73,-21.6742,0	0/1:160:78,82:78:2783:82:2924:-215.231,0,-202.546	1/1:40:0,40:0:0:40:1420:-128.095,-12.0412,0	0/1:86:40,46:40:1432:46:1644:-122.36,0,-103.289	1/1:89:0,89:0:0:89:3188:-287.144,-26.7917,0	1/1:99:0,99:0:0:99:3534:-318.27,-29.802,0	0/1:196:103,93:103:3688:93:3324:-240.377,0,-273.121	0/1:81:59,22:59:2099:22:788:-46.8614,0,-164.796	1/1:83:0,83:0:0:83:2949:-265.644,-24.9855,0	1/1:101:0,101:0:0:101:3577:-322.139,-30.404,0
chr11	14327633	.	G	A	34033.3	PASS	AB=0.530547;ABP=33.2573;AC=40;AF=0.217391;AN=184;AO=1990;CIGAR=1X;DP=7238;DPB=7238;DPRA=1.57637;EPP=4324.24;EPPR=11396.7;GTI=3;LEN=1;MEANALT=1;MQM=59.9839;MQMR=59.9874;NS=92;NUMALT=1;ODDS=1.35823;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71335;QR=187786;RO=5247;RPL=1990;RPP=4324.24;RPPR=11396.7;RPR=0;RUN=1;SAF=0;SAP=4324.24;SAR=1990;SRF=0;SRP=11396.7;SRR=5247;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:121:68,53:68:2432:53:1900:-134.853,0,-182.711	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/1:169:88,81:88:3148:81:2908:-211.081,0,-232.672	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/0:123:123,0:123:4396:0:0:0,-37.0267,-395.814	0/1:55:30,25:30:1072:25:896:-64.4037,0,-80.2358	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9599	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:84:49,35:49:1756:35:1260:-88.419,0,-133.037	0/1:62:36,26:36:1292:26:936:-65.8956,0,-97.9199	0/0:88:88,0:88:3151:0:0:0,-26.4906,-283.758	0/1:65:39,26:39:1400:26:936:-64.9925,0,-106.732	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/1:63:27,36:27:968:36:1291:-97.5287,0,-68.4725	0/1:40:27,13:27:964:13:464:-30.0563,0,-75.0356	0/1:123:47,76:47:1688:76:2720:-208.016,0,-115.18	0/0:117:116,1:116:4156:1:36:0,-31.6222,-370.624	0/1:210:64,146:64:2296:146:5239:-408.43,0,-143.684	0/1:58:24,34:24:856:34:1224:-93.0058,0,-59.9014	0/0:39:38,0:38:1352:0:0:0,-11.4391,-121.621	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:264:109,155:109:3896:155:5551:-420.241,0,-271.363	0/0:110:109,1:109:3900:1:36:0,-29.515,-347.596	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/0:169:169,0:169:6060:0:0:0,-50.8741,-545.502	0/1:112:52,60:52:1864:60:2141:-159.241,0,-134.324	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:239:114,125:114:4065:125:4496:-332.86,0,-294.09	0/1:222:109,113:109:3874:113:4056:-297.841,0,-282.025	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	.:.:.:.:.:.:.:.	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.04	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:118:118,0:118:4213:0:0:0,-35.5215,-379.35	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.476	0/1:27:9,18:9:324:18:644:-50.1628,0,-21.378	0/1:103:46,57:46:1648:57:2051:-153.855,0,-117.602	0/0:114:111,3:111:3955:3:108:0,-24.2422,-346.067	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:149:80,69:80:2857:69:2472:-177.88,0,-212.513	0/0:92:92,0:92:3280:0:0:0,-27.6948,-295.421	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.788	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:14:3,11:3:108:11:388:-31.0429,0,-5.86075	0/1:97:43,54:43:1544:54:1932:-144.957,0,-110.053	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:9:6,3:6:212:3:104:-6.99354,0,-16.7155	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:118:57,61:57:2044:61:2188:-161.664,0,-148.71	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:140:68,72:68:2424:72:2574:-189.766,0,-176.272	0/0:106:104,2:104:3732:2:72:0,-25.0725,-329.243	0/1:49:28,21:28:999:21:756:-53.6168,0,-75.474	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:180:79,101:79:2840:101:3609:-270.829,0,-201.652	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:18:8,10:8:288:10:347:-26.1451,0,-20.8489	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:12:2,10:2:72:10:352:-28.4058,0,-3.22436	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:111:52,59:52:1864:59:2116:-157.294,0,-134.625	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:112:47,65:47:1680:65:2336:-176.784,0,-117.772	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:107:40,67:40:1424:67:2408:-184.766,0,-96.2473	0/0:88:88,0:88:3125:0:0:0,-26.4906,-280.113	0/0:158:157,1:157:5616:1:36:0,-43.9645,-501.964	0/1:117:59,58:59:2120:58:2088:-152.969,0,-155.848	0/0:55:54,1:54:1928:1:36:0,-12.9584,-170.198	0/0:92:92,0:92:3296:0:0:0,-27.6948,-296.859	0/1:181:104,77:104:3731:77:2747:-192.985,0,-281.503	0/0:38:38,0:38:1355:0:0:0,-11.4391,-122.25	0/1:82:45,37:45:1599:37:1332:-95.4979,0,-119.515	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:84:44,40:44:1575:40:1440:-104.611,0,-116.754	0/1:86:27,59:27:972:59:2109:-164.189,0,-61.9093	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:111:110,1:110:3947:1:36:0,-29.8161,-351.822
chr11	14334494	.	G	A	24820.5	PASS	AB=0.423738;ABP=197.095;AC=34;AF=0.180851;AN=188;AO=1672;CIGAR=1X;DP=15214;DPB=15214;DPRA=1.28989;EPP=3633.71;EPPR=28090.4;GTI=3;LEN=1;MEANALT=1.10638;MQM=59.9264;MQMR=59.9832;NS=94;NUMALT=1;ODDS=1.93081;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59925;QR=483088;RO=13532;RPL=0;RPP=3633.71;RPPR=28098.9;RPR=1672;RUN=1;SAF=1672;SAP=3633.71;SAR=0;SRF=13531;SRP=29378.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:63:41,22:41:1453:22:792:-52.6408,0,-112.099	0/0:114:114,0:114:4088:0:0:0,-34.3174,-368.083	0/1:77:27,50:27:953:50:1792:-138.383,0,-62.8994	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:118:117,1:117:4173:1:36:0,-31.9233,-372.154	0/1:47:28,19:28:1008:19:684:-47.7419,0,-76.8879	0/0:43:42,1:42:1481:1:36:0,-9.34601,-129.984	0/0:443:443,0:443:15819:0:0:0,-133.356,-1423.41	0/1:99:51,48:51:1832:48:1724:-125.643,0,-135.359	0/1:59:31,28:31:1112:28:1004:-72.9151,0,-82.6306	0/0:79:79,0:79:2818:0:0:0,-23.7814,-253.858	0/1:52:18,34:18:644:34:1224:-94.8135,0,-42.637	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.764	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:33:12,21:12:428:21:743:-57.2498,0,-28.9248	0/1:126:102,24:102:3633:24:860:-39.7921,0,-289.245	0/1:51:22,29:22:792:29:1040:-78.5618,0,-56.2531	0/0:76:76,0:76:2708:0:0:0,-22.8783,-243.965	0/1:37:13,24:13:464:24:860:-66.5837,0,-30.9594	0/1:42:25,17:25:892:17:604:-42.0431,0,-67.9564	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.29	0/1:98:54,44:54:1936:44:1572:-112.271,0,-145.015	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/1:108:57,51:57:2006:51:1832:-132.65,0,-148.299	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:408:407,1:407:14589:1:36:0,-119.222,-1309.15	0/0:388:387,0:387:13880:0:0:0,-116.499,-1248.61	0/0:1070:1069,1:1069:38178:1:36:0,-318.504,-3431.14	0/0:1688:1683,2:1683:59977:2:72:0,-500.759,-5388.88	0/0:1157:1156,0:1156:41286:0:0:0,-347.991,-3713.99	0/1:151:83,68:83:2964:68:2448:-175.033,0,-221.538	0/1:79:29,50:29:1040:50:1774:-136.088,0,-70.133	0/0:381:381,0:381:13641:0:0:0,-114.692,-1227.45	0/0:639:639,0:639:22794:0:0:0,-192.358,-2050.87	0/0:36:36,0:36:1288:0:0:0,-10.8371,-115.906	0/0:196:196,0:196:7001:0:0:0,-59.0019,-630.154	0/0:82:82,0:82:2914:0:0:0,-24.6845,-262.493	0/0:34:34,0:34:1203:0:0:0,-10.235,-108.575	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:49:37,12:37:1316:12:432:-24.4707,0,-103.991	0/1:71:26,45:26:932:45:1605:-123.365,0,-62.8257	0/0:106:106,0:106:3758:0:0:0,-31.9092,-338.419	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:57:32,25:32:1144:25:896:-63.8016,0,-86.1108	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:341:335,5:335:11897:5:169:0,-87.1648,-1055.05	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:203:193,9:193:6881:9:324:0,-31.662,-589.855	0/1:81:52,29:52:1856:29:1025:-68.1773,0,-142.936	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:188:188,0:188:6733:0:0:0,-56.5936,-606.042	0/0:707:706,0:706:25148:0:0:0,-212.527,-2262.25	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:88:38,50:38:1360:50:1786:-134.532,0,-96.21	0/1:303:215,88:215:7693:88:3153:-192.781,0,-601.191	0/1:58:24,34:24:864:34:1224:-92.9789,0,-60.6228	0/0:100:99,1:99:3540:1:36:0,-26.5047,-315.211	0/1:41:20,21:20:716:21:752:-55.664,0,-52.4255	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:56:23,33:23:820:33:1188:-89.5924,0,-57.2648	0/0:112:110,2:110:3929:2:72:0,-26.8786,-346.965	0/1:337:302,35:302:10798:35:1260:-12.2584,0,-870.276	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:43:43,0:43:1539:0:0:0,-12.9443,-138.802	0/0:212:206,5:206:7337:5:180:0,-47.3251,-643.828	0/0:126:126,0:126:4462:0:0:0,-37.9298,-401.752	0/0:58:57,1:57:2029:1:36:0,-13.8615,-179.282	0/0:112:112,0:112:4008:0:0:0,-33.7154,-360.908	0/1:68:22,46:22:792:46:1648:-128.139,0,-51.1356	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/1:52:25,27:25:900:27:964:-71.4233,0,-65.6675	0/0:303:289,14:289:10325:14:496:0,-46.2378,-884.193	0/1:60:20,40:20:720:40:1436:-111.476,0,-47.067	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:46:22,24:22:788:24:860:-63.8745,0,-57.3928	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/1:86:47,39:47:1676:39:1391:-99.5997,0,-125.239	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:67:33,34:33:1173:34:1224:-90.298,0,-85.7065	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:484:484,0:484:17280:0:0:0,-145.699,-1554.83	0/1:1123:659,463:659:23467:463:16619:-1157.24,0,-1773.3	0/1:70:20,50:20:720:50:1800:-141.21,0,-44.0567	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.1769	0/0:72:71,1:71:2540:1:36:0,-18.0759,-225.253
chr11	14334719	.	G	A	45279	PASS	AB=0.515226;ABP=13.7224;AC=40;AF=0.212766;AN=188;AO=2753;CIGAR=1X;DP=11305;DPB=11305;DPRA=1.3158;EPP=5963.71;EPPR=18525.7;GTI=0;LEN=1;MEANALT=1.04167;MQM=59.9491;MQMR=59.9338;NS=94;NUMALT=1;ODDS=2.6128;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96616;QR=302577;RO=8550;RPL=2;RPP=5963.71;RPPR=18517;RPR=2751;RUN=1;SAF=0;SAP=5981.07;SAR=2753;SRF=1;SRP=18560.4;SRR=8549;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:242:90,152:90:3190:152:5379:-411.397,0,-214.286	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	0/1:251:135,116:135:4789:116:4068:-290.75,0,-355.608	0/0:130:130,0:130:4597:0:0:0,-39.1339,-413.894	0/0:123:123,0:123:4400:0:0:0,-37.0267,-396.173	0/0:215:215,0:215:7648:0:0:0,-64.7214,-687.155	0/0:190:188,2:188:6660:2:72:0,-50.359,-592.642	0/1:140:66,74:66:2335:74:2587:-190.935,0,-168.217	0/0:164:164,0:164:5814:0:0:0,-49.3689,-523.374	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/1:76:36,40:36:1217:40:1355:-99.3611,0,-86.9475	0/1:69:34,35:34:1190:35:1210:-88.4304,0,-86.6324	0/0:75:75,0:75:2623:0:0:0,-22.5772,-236.315	0/1:52:32,20:32:1120:20:702:-47.8489,0,-85.4513	0/0:46:46,0:46:1610:0:0:0,-13.8474,-145.185	0/0:90:89,1:89:3135:1:36:0,-23.4944,-278.781	0/1:69:34,35:34:1199:35:1195:-87.0762,0,-87.4437	0/1:55:36,19:36:1271:19:654:-42.6234,0,-98.113	0/1:206:92,114:92:3246:114:3968:-295.28,0,-230.349	0/0:226:226,0:226:8030:0:0:0,-68.0328,-722.522	0/1:96:31,65:31:1093:65:2318:-179.981,0,-69.7788	0/1:87:36,51:36:1251:51:1801:-136.182,0,-86.6989	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/0:95:95,0:95:3313:0:0:0,-28.5978,-298.388	0/1:389:183,206:183:6535:206:7241:-534.651,0,-471.13	0/0:255:255,0:255:9038:0:0:0,-76.7626,-813.4	0/0:51:51,0:51:1796:0:0:0,-15.3525,-161.906	0/0:243:243,0:243:8594:0:0:0,-73.1503,-773.465	0/1:155:92,63:92:3244:63:2183:-150.072,0,-245.52	0/0:147:147,0:147:5240:0:0:0,-44.2514,-471.735	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7743	0/0:14:14,0:14:487:0:0:0,-4.21442,-44.1592	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5509	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.4921	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.2608	0/1:242:119,123:119:4214:123:4246:-309.474,0,-306.595	0/1:261:126,135:126:4460:135:4763:-350.208,0,-322.983	0/0:80:80,0:80:2813:0:0:0,-24.0824,-253.408	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:208:208,0:208:7380:0:0:0,-62.6142,-664.247	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:126:126,0:126:4463:0:0:0,-37.9298,-401.794	0/0:199:198,1:198:7001:1:32:0,-56.7057,-626.958	0/0:83:83,0:83:2917:0:0:0,-24.9855,-262.277	0/1:119:57,62:57:2016:62:2206:-162.981,0,-145.888	0/1:165:80,85:80:2842:85:3011:-221.552,0,-206.348	0/0:254:251,2:251:8892:2:72:0,-69.6837,-793.431	0/0:119:119,0:119:4220:0:0:0,-35.8226,-379.979	0/1:169:75,94:75:2671:94:3313:-247.515,0,-189.761	0/0:88:86,2:86:3060:2:68:0,-20.0329,-269.17	0/1:27:13,14:13:464:14:496:-36.8464,0,-33.9697	0/0:175:175,0:175:6129:0:0:0,-52.6802,-551.715	0/0:59:59,0:59:2082:0:0:0,-17.7608,-187.642	0/1:37:22,15:22:779:15:528:-36.7133,0,-59.294	0/1:176:84,92:84:2941:92:3262:-240.82,0,-211.94	0/1:56:37,19:37:1293:19:664:-43.2246,0,-99.8085	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/0:44:44,0:44:1541:0:0:0,-13.2453,-138.98	0/0:74:74,0:74:2609:0:0:0,-22.2762,-235.056	0/1:104:63,41:63:2199:41:1413:-96.1556,0,-166.864	0/1:29:17,12:17:600:12:403:-27.861,0,-45.5993	0/1:266:127,139:127:4498:139:4901:-361.172,0,-324.916	0/0:173:172,1:172:6114:1:36:0,-48.4799,-546.764	0/1:87:50,37:50:1782:37:1305:-91.5598,0,-134.472	0/0:103:103,0:103:3671:0:0:0,-31.0061,-330.592	0/1:392:173,219:173:6092:219:7751:-579.617,0,-430.026	0/0:112:112,0:112:3977:0:0:0,-33.7154,-358.122	0/1:22:10,12:10:356:12:415:-31.0576,0,-25.7586	0/0:63:63,0:63:2240:0:0:0,-18.9649,-201.864	0/0:104:103,1:103:3645:1:36:0,-27.7088,-324.655	0/1:31:15,16:15:536:16:572:-42.4815,0,-39.2429	0/0:147:147,0:147:5183:0:0:0,-44.2514,-466.599	0/0:71:71,0:71:2504:0:0:0,-21.3731,-225.612	0/0:214:214,0:214:7559:0:0:0,-64.4204,-680.169	0/1:232:109,122:109:3879:122:4324:-319.46,0,-279.554	0/0:43:43,0:43:1516:0:0:0,-12.9443,-136.73	0/1:191:85,106:85:2999:106:3692:-274.987,0,-212.645	0/1:24:16,8:16:563:8:288:-19.0423,0,-43.7744	0/1:156:74,82:74:2596:82:2919:-215.974,0,-186.923	0/0:151:151,0:151:5403:0:0:0,-45.4555,-486.397	0/0:239:239,0:239:8482:0:0:0,-71.9462,-763.26	0/1:130:70,60:70:2481:60:2066:-147.075,0,-184.409	0/0:63:63,0:63:2204:0:0:0,-18.9649,-198.624	0/0:119:119,0:119:4192:0:0:0,-35.8226,-377.463	0/1:212:111,101:111:3922:101:3569:-257.601,0,-289.356	0/0:64:64,0:64:2235:0:0:0,-19.2659,-201.412	0/1:91:48,43:48:1681:43:1470:-105.196,0,-124.181	0/0:88:88,0:88:3122:0:0:0,-26.4906,-281.207	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.741	0/1:80:41,39:41:1446:39:1339:-96.7222,0,-106.08	0/1:97:38,59:38:1337:59:2039:-154.58,0,-91.428	0/0:123:121,2:121:4302:2:72:0,-30.19,-380.519	0/0:114:114,0:114:4030:0:0:0,-34.3174,-362.892
chr11	14511511	.	T	A	60259.5	PASS	AB=0.510897;ABP=4.61942;AC=144;AF=0.782609;AN=184;AO=2811;CIGAR=1X;DP=3574;DPB=3574;DPRA=0;EPP=6107.02;EPPR=1655.5;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9726;MQMR=59.979;NS=92;NUMALT=1;ODDS=0.49655;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100730;QR=27057;RO=761;RPL=2811;RPP=6107.02;RPPR=1655.5;RPR=0;RUN=1;SAF=2811;SAP=6107.02;SAR=0;SRF=761;SRP=1655.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	1/1:48:0,48:0:0:48:1728:-155.699,-14.4494,0	0/1:122:53,69:53:1895:69:2476:-186.368,0,-134.102	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:73:0,73:0:0:73:2622:-236.227,-21.9752,0	0/1:32:11,21:11:392:21:752:-58.3733,0,-25.9871	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:41:24,17:24:818:17:599:-41.8712,0,-61.5879	0/1:41:25,16:25:892:16:566:-38.9286,0,-68.2575	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:44:22,22:22:784:22:783:-57.5476,0,-57.6386	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:10:7,3:7:244:3:108:-7.06487,0,-19.2891	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	0/1:35:12,23:12:432:23:824:-63.9473,0,-28.6851	1/1:92:0,92:0:0:92:3285:-295.868,-27.6948,0	0/1:25:12,13:12:428:13:451:-33.3941,0,-31.3331	0/1:30:17,13:17:612:13:468:-33.4287,0,-46.3825	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:98:47,51:47:1688:51:1836:-136.02,0,-122.65	1/1:108:0,108:0:0:108:3873:-348.762,-32.5112,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:37:21,16:21:743:16:576:-41.0369,0,-56.0552	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:5:4,1:4:131:1:36:-2.09312,0,-10.6083	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:104:50,54:50:1774:54:1922:-141.948,0,-128.634	0/1:44:19,25:19:675:25:885:-66.7212,0,-47.8316	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	.:.:.:.:.:.:.:.	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:66:0,66:0:0:66:2337:-210.218,-19.868,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:35:0,35:0:0:35:1257:-113.435,-10.5361,0	0/1:42:14,28:14:504:28:988:-76.5893,0,-33.0548	0/1:26:9,15:9:315:15:540:-41.352,0,-21.1045	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:40:24,16:24:841:16:576:-40.1338,0,-63.9652	1/1:97:0,97:0:0:97:3488:-314.13,-29.1999,0	0/1:11:8,3:8:288:3:104:-6.39148,0,-22.9561	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:19:7,12:7:248:12:432:-33.5016,0,-16.9446	0/1:57:23,34:23:819:34:1216:-92.5879,0,-56.8729	0/1:32:11,21:11:387:21:756:-58.7343,0,-25.533	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:64:34,30:34:1192:30:1076:-77.8869,0,-88.3165	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:107:72,35:72:2572:35:1260:-81.4953,0,-199.52	1/1:78:0,78:0:0:78:2788:-251.159,-23.4803,0	0/1:38:15,23:15:540:23:828:-63.405,0,-37.4974	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:65:28,37:28:1008:37:1326:-100.075,0,-71.4694	1/1:64:0,64:0:0:64:2299:-207.171,-19.2659,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	1/1:64:0,64:0:0:64:2304:-207.62,-19.2659,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	0/1:73:41,32:41:1467:32:1152:-82.0134,0,-110.35	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:45:23,22:23:804:22:792:-58.0593,0,-59.1302	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	1/1:93:0,93:0:0:93:3339:-300.726,-27.9958,0	0/1:33:12,21:12:432:21:752:-58.0723,0,-29.2872	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:55:23,32:23:804:32:1148:-87.0732,0,-56.1199	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:34:21,13:21:748:13:468:-32.2246,0,-57.4103	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:32:14,18:14:504:18:639:-48.2053,0,-36.0651	0/1:34:19,15:19:676:15:540:-38.7015,0,-50.933	1/1:63:0,63:0:0:63:2248:-202.581,-18.9649,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0
chr11	14516365	.	G	A	350661	PASS	AB=0.491975;ABP=6.91385;AC=148;AF=0.787234;AN=188;AO=12878;CIGAR=1X;DP=16435;DPB=16435;DPRA=0;EPP=27880.4;EPPR=7681.38;GTI=0;LEN=1;MEANALT=1.04255;MQM=58.6237;MQMR=59.9994;NS=94;NUMALT=1;ODDS=3.88342;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=457368;QR=126101;RO=3552;RPL=5922;RPP=183.29;RPPR=25.5467;RPR=6956;RUN=1;SAF=5932;SAP=176.383;SAR=6946;SRF=1684;SRP=23.7078;SRR=1868;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:133:0,133:0:0:133:4732:-425.9,-40.037,0	0/1:207:101,106:101:3588:106:3763:-276.279,0,-260.814	1/1:261:0,261:0:0:261:9306:-836.702,-78.5688,0	0/1:289:132,156:132:4682:156:5556:-412.82,0,-334.486	1/1:114:0,114:0:0:114:4071:-366.201,-34.3174,0	1/1:97:0,97:0:0:97:3415:-306.835,-29.1999,0	1/1:173:0,173:0:0:173:6125:-551.164,-52.0782,0	1/1:296:0,296:0:0:296:10468:-941.12,-89.1049,0	0/1:289:139,150:139:4904:150:5332:-392.658,0,-354.517	1/1:174:0,174:0:0:174:6179:-556.006,-52.3792,0	1/1:127:0,127:0:0:127:4519:-406.759,-38.2308,0	0/1:187:99,87:99:3512:87:3093:-222.078,0,-259.978	0/1:194:97,95:97:3450:95:3340:-242.479,0,-252.556	1/1:140:0,140:0:0:140:4984:-448.136,-42.1442,0	0/1:198:106,92:106:3796:92:3300:-237.444,0,-282.234	1/1:139:2,137:2:72:137:4879:-432.05,-35.0064,0	1/1:137:1,136:1:36:136:4812:-429.297,-37.6428,0	0/1:110:55,55:55:1938:55:1947:-142.203,0,-141.582	0/1:93:49,44:49:1731:44:1572:-113.626,0,-128.078	0/1:270:150,120:150:5306:120:4283:-303.61,0,-396.4	1/1:324:0,324:0:0:324:11376:-1021.97,-97.5337,0	0/1:117:74,43:74:2643:43:1535:-103.222,0,-202.896	0/1:189:72,117:72:2560:117:4199:-321.15,0,-173.756	1/1:200:0,200:0:0:200:7115:-639.829,-60.206,0	1/1:163:0,163:0:0:163:5768:-518.66,-49.0679,0	0/1:420:246,174:246:8679:174:6170:-428.503,0,-654.679	1/1:433:0,433:0:0:433:15419:-1386.69,-130.346,0	1/1:88:0,88:0:0:88:3125:-281.316,-26.4906,0	1/1:447:1,446:1:36:446:15894:-1426.45,-130.962,0	0/1:114:64,50:64:2271:50:1779:-126.016,0,-170.335	1/1:212:0,212:0:0:212:7567:-680.421,-63.8184,0	0/1:15:9,6:9:324:6:216:-15.2172,0,-24.9904	1/1:40:0,40:0:0:40:1428:-128.809,-12.0412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:19:0,19:0:0:19:676:-60.965,-5.71957,0	1/1:13:0,13:0:0:13:468:-42.4549,-3.91339,0	0/1:436:216,220:216:7650:220:7801:-570.384,0,-557.289	0/1:157:79,78:79:2820:78:2769:-202.02,0,-206.778	1/1:98:0,98:0:0:98:3483:-312.945,-29.5009,0	1/1:14:0,14:0:0:14:500:-45.2212,-4.21442,0	1/1:188:0,188:0:0:188:6703:-603.085,-56.5936,0	1/1:89:0,89:0:0:89:3156:-284.198,-26.7917,0	1/1:266:0,266:0:0:266:9443:-849.271,-80.074,0	1/1:171:0,171:0:0:171:6006:-540.429,-51.4761,0	1/1:148:0,148:0:0:148:5237:-471.309,-44.5524,0	0/1:158:83,75:83:2947:75:2660:-191.649,0,-217.902	0/1:276:139,137:139:4936:137:4811:-349.803,0,-361.308	1/1:272:1,271:1:36:271:9674:-866.495,-78.2819,0	1/1:176:0,176:0:0:176:6261:-563.492,-52.9813,0	0/1:205:101,104:101:3598:104:3697:-271.15,0,-262.315	1/1:208:0,208:0:0:208:7371:-663.286,-62.6142,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	1/1:253:0,253:0:0:253:8998:-808.706,-76.1606,0	1/1:71:0,71:0:0:71:2524:-227.387,-21.3731,0	0/1:26:11,15:11:383:15:521:-39.3791,0,-26.9765	0/1:219:113,106:113:4043:106:3756:-272.028,0,-298.132	0/1:83:43,40:43:1514:40:1425:-103.555,0,-111.566	0/1:26:15,11:15:527:11:396:-28.156,0,-39.9334	1/1:44:0,44:0:0:44:1567:-140.035,-13.2453,0	1/1:150:1,149:1:32:149:5289:-471.63,-41.9552,0	0/1:204:103,101:103:3708:101:3593:-261.131,0,-272.51	0/1:25:13,12:13:449:12:428:-31.3331,0,-33.2117	0/1:232:109,123:109:3885:123:4359:-322.599,0,-280.005	1/1:313:0,313:0:0:313:11094:-998.121,-94.2224,0	0/1:111:62,49:62:2184:49:1752:-124.359,0,-163.41	1/1:162:1,161:1:36:161:5721:-511.366,-45.1686,0	0/1:258:104,154:104:3701:154:5462:-413.752,0,-255.626	1/1:217:1,216:1:36:216:7702:-688.946,-61.7252,0	0/1:57:29,28:29:1032:28:1004:-73.3963,0,-76.0348	1/1:142:0,142:0:0:142:5009:-450.512,-42.7463,0	1/1:135:0,135:0:0:135:4714:-424.242,-40.6391,0	0/1:44:20,24:20:712:24:856:-64.1149,0,-51.1613	1/1:153:0,153:0:0:153:5398:-485.7,-46.0576,0	1/1:151:0,151:0:0:151:5374:-483.612,-45.4555,0	1/1:335:0,335:0:0:335:11875:-1067.99,-100.845,0	0/1:258:127,131:127:4503:131:4688:-344.398,0,-327.774	1/1:201:2,199:2:72:199:7093:-630.794,-53.6703,0	0/1:244:112,132:112:3986:132:4717:-350.911,0,-285.48	0/1:35:19,16:19:684:16:576:-41.5359,0,-51.3543	0/1:235:114,121:114:4032:121:4292:-315.429,0,-292.329	1/1:215:0,215:0:0:215:7633:-686.49,-64.7215,0	1/1:438:0,438:0:0:438:15543:-1398.23,-131.851,0	0/1:165:88,77:88:3108:77:2735:-196.458,0,-230.277	1/1:174:0,174:0:0:174:6174:-555.488,-52.3792,0	1/1:195:0,195:0:0:195:6900:-620.688,-58.7009,0	0/1:312:161,151:161:5698:151:5395:-391.107,0,-419.021	1/1:66:1,64:1:36:64:2268:-200.594,-16.2565,0	0/1:160:65,95:65:2315:95:3378:-255.846,0,-160.445	1/1:156:0,156:0:0:156:5542:-498.584,-46.9607,0	1/1:91:0,91:0:0:91:3238:-291.554,-27.3937,0	0/1:162:80,82:80:2840:82:2894:-211.849,0,-207.07	0/1:188:138,50:138:4926:50:1788:-104.608,0,-386.897	1/1:168:0,168:0:0:168:5977:-537.89,-50.573,0	1/1:265:0,265:0:0:265:9453:-850.444,-79.773,0
chr11	14517918	.	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chr11	14723608	.	C	T	109878	PASS	AB=0.348267;ABP=891.302;AC=148;AF=0.787234;AN=188;AO=5407;CIGAR=1X;DP=8318;DPB=8318;DPRA=0;EPP=11744.2;EPPR=6298.14;GTI=9;LEN=1;MEANALT=1;MQM=59.5643;MQMR=59.8334;NS=94;NUMALT=1;ODDS=2.41492;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193215;QR=103368;RO=2911;RPL=5;RPP=11700.8;RPPR=131.482;RPR=5402;RUN=1;SAF=5;SAP=11700.8;SAR=5402;SRF=1251;SRP=127.794;SRR=1660;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1152:-103.964,-9.63296,0	0/1:127:87,40:87:3091:40:1417:-89.3799,0,-240.178	1/1:69:0,69:0:0:69:2474:-222.889,-20.7711,0	0/1:184:121,63:121:4278:63:2245:-146.887,0,-329.804	1/1:66:0,66:0:0:66:2364:-213.009,-19.868,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:63:1,62:1:36:62:2212:-195.744,-15.3666,0	1/1:143:0,143:0:0:143:5104:-459.4,-43.0473,0	0/1:100:72,28:72:2567:28:1000:-60.2124,0,-201.16	1/1:103:0,103:0:0:103:3672:-330.672,-31.0061,0	1/1:99:0,99:0:0:99:3528:-317.709,-29.802,0	0/1:116:76,40:76:2694:40:1419:-93.079,0,-207.66	0/1:108:80,28:80:2800:28:1004:-58.1565,0,-219.705	1/1:88:0,88:0:0:88:3160:-284.6,-26.4906,0	0/1:110:76,34:76:2704:34:1207:-75.8183,0,-210.489	1/1:84:0,84:0:0:84:2973:-267.785,-25.2865,0	1/1:75:0,75:0:0:75:2662:-239.804,-22.5773,0	0/1:123:76,47:76:2702:47:1672:-113.698,0,-206.396	0/1:105:61,44:61:2165:44:1576:-110.309,0,-163.496	0/1:178:108,70:108:3863:70:2503:-171.898,0,-294.275	1/1:100:0,100:0:0:100:3584:-322.759,-30.103,0	0/1:66:45,21:45:1608:21:748:-47.7755,0,-125.141	0/1:63:48,15:48:1706:15:536:-29.6052,0,-134.852	1/1:79:1,78:1:36:78:2775:-246.003,-20.1831,0	1/1:66:0,66:0:0:66:2340:-210.775,-19.868,0	0/1:298:200,98:200:7115:98:3510:-226.338,0,-550.694	1/1:172:0,172:0:0:172:6152:-553.539,-51.7772,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:172:1,171:1:36:171:6093:-544.846,-48.1789,0	0/1:82:58,24:58:2067:24:864:-53.3935,0,-161.611	1/1:70:2,68:2:72:68:2419:-211.124,-14.2354,0	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	1/1:23:0,23:0:0:23:828:-74.8395,-6.92369,0	1/1:3:0,3:0:0:3:104:-9.70243,-0.90309,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:321:206,115:206:7278:115:4084:-270.622,0,-558.304	0/1:117:70,47:70:2487:47:1688:-116.986,0,-188.863	1/1:90:0,90:0:0:90:3216:-289.578,-27.0927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:87:0,87:0:0:87:3112:-280.29,-26.1896,0	1/1:62:1,61:1:32:61:2192:-194.193,-15.4645,0	1/1:88:0,88:0:0:88:3141:-282.885,-26.4906,0	1/1:91:0,91:0:0:91:3272:-294.687,-27.3937,0	1/1:68:0,68:0:0:68:2436:-219.397,-20.47,0	0/1:70:40,30:40:1396:30:1080:-76.4402,0,-104.861	0/1:87:53,34:53:1900:34:1216:-83.5406,0,-145.085	1/1:90:2,88:2:72:88:3160:-277.78,-20.256,0	1/1:66:0,66:0:0:66:2358:-212.426,-19.868,0	0/1:164:97,67:97:3472:67:2385:-165.512,0,-263.321	1/1:93:0,93:0:0:93:3336:-300.292,-27.9958,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5275	1/1:101:0,101:0:0:101:3613:-325.301,-30.404,0	1/1:18:1,17:1:36:17:612:-51.8152,-1.82027,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:135:93,42:93:3281:42:1489:-93.6341,0,-254.821	0/1:51:37,14:37:1315:14:504:-30.3456,0,-103.296	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:18:0,18:0:0:18:648:-58.651,-5.41854,0	1/1:41:0,41:0:0:41:1461:-131.641,-12.3422,0	0/1:154:102,52:102:3595:52:1859:-121.213,0,-277.363	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:130:72,58:72:2550:58:2080:-148.326,0,-190.586	1/1:95:2,93:2:72:93:3320:-292.082,-21.7611,0	0/1:54:31,23:31:1104:23:828:-58.5803,0,-83.415	1/1:71:0,71:0:0:71:2543:-229.102,-21.3731,0	0/1:198:138,60:138:4905:60:2144:-133.617,0,-381.995	1/1:98:2,96:2:72:96:3440:-302.865,-22.6642,0	0/1:61:29,32:29:1008:32:1144:-84.9063,0,-72.6652	1/1:69:0,69:0:0:69:2459:-221.539,-20.7711,0	1/1:107:0,107:0:0:107:3813:-343.359,-32.2102,0	0/1:45:25,20:25:887:20:702:-49.9338,0,-66.5994	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:35:0,35:0:0:35:1245:-112.345,-10.5361,0	1/1:92:0,92:0:0:92:3295:-296.744,-27.6948,0	0/1:145:95,50:95:3381:50:1800:-118.628,0,-260.853	1/1:58:0,58:0:0:58:2072:-186.683,-17.4597,0	0/1:136:101,35:101:3589:35:1256:-72.3512,0,-282.277	0/1:23:17,6:17:599:6:216:-12.8668,0,-47.3126	0/1:114:82,32:82:2931:32:1144:-68.7481,0,-229.693	1/1:78:0,78:0:0:78:2788:-251.12,-23.4803,0	1/1:132:0,132:0:0:132:4740:-426.412,-39.736,0	0/1:157:95,62:95:3366:62:2215:-152.341,0,-255.895	1/1:66:0,66:0:0:66:2338:-210.664,-19.868,0	1/1:103:1,102:1:36:102:3664:-326.345,-27.4078,0	0/1:195:122,73:122:4324:73:2590:-174.541,0,-330.559	1/1:38:0,38:0:0:38:1364:-123.053,-11.4391,0	0/1:113:74,39:74:2642:39:1396:-91.89,0,-203.997	1/1:76:0,76:0:0:76:2736:-246.474,-22.8783,0	1/1:78:0,78:0:0:78:2753:-247.991,-23.4803,0	0/1:143:82,61:82:2927:61:2189:-154.223,0,-220.616	0/1:116:94,22:94:3347:22:792:-36.6862,0,-266.521	1/1:22:0,22:0:0:22:792:-70.5261,-6.62266,0	1/1:115:2,113:2:72:113:4030:-356.038,-27.7817,0
chr11	14889214	.	GCATC	ACATT,ACATC	171368	PASS	AB=0.467851,0.527896;ABP=38.8931,30.0269;AC=147,41;AF=0.781915,0.218085;AN=188;AO=6332,2129;CIGAR=1X3M1X,1X4M;DP=8514;DPB=8541;DPRA=18.2989,1.391;EPP=13744.1,4626.08;EPPR=7.35324;GTI=3;LEN=5,1;MEANALT=2,2.35417;MQM=53.9613,59.5862;MQMR=60;NS=94;NUMALT=2;ODDS=2.35455;PAIRED=0,0;PAIREDR=0;PAO=67.5,67.5;PQA=2403.5,2403.5;PQR=0;PRO=0;QA=214336,75971;QR=70;RO=2;RPL=6331,2129;RPP=13744.1,4626.08;RPPR=7.35324;RPR=1,0;RUN=1,1;SAF=6332,2129;SAP=13752.8,4626.08;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27,0:0:0:27,0:902,0:-81.1582,-8.12781,0,-81.1582,-8.12781,-81.1582	1/2:63:0,26,37:0:0:26,37:919,1320:-182.555,-107.886,-100.059,-74.9662,0,-63.8281	1/1:131:0,131,0:0:0:131,0:4440,0:-398.272,-39.4349,0,-398.272,-39.4349,-398.272	1/2:313:0,147,166:0:0:147,166:4909,5923:-879.292,-482.858,-438.606,-396.54,0,-346.569	1/1:46:0,45,0:0:0:45,0:1508,0:-135.011,-13.5464,0,-135.011,-13.5464,-135.011	1/1:31:0,31,0:0:0:31,0:1061,0:-95.0083,-9.33193,0,-95.0083,-9.33193,-95.0083	1/1:53:0,52,0:0:0:52,0:1756,0:-157.835,-15.6536,0,-157.835,-15.6536,-157.835	1/1:162:0,159,3:0:0:159,3:5450,108:-488.081,-47.8638,0,-479.269,-38.8121,-478.366	1/2:124:0,55,69:0:0:55,69:1875,2469:-353.3,-201.676,-185.119,-151.972,0,-131.201	1/1:62:0,62,0:0:0:62,0:2125,0:-191.302,-18.6639,0,-191.302,-18.6639,-191.302	1/1:40:0,40,0:0:0:40,0:1342,0:-120.097,-12.0412,0,-120.097,-12.0412,-120.097	1/2:85:0,51,34:0:0:51,34:1703,1212:-236.432,-99.0278,-83.6753,-137.635,0,-127.4	1/2:63:0,30,33:0:0:30,33:1045,1188:-181.965,-97.2062,-88.1753,-85.0545,0,-75.1205	1/1:34:0,33,0:0:0:33,0:1124,0:-101.029,-9.93399,0,-101.029,-9.93399,-101.029	1/2:59:0,36,23:0:0:36,23:1204,824:-164.964,-67.5573,-56.7202,-97.7551,0,-90.8314	1/1:44:0,44,0:0:0:44,0:1515,0:-136.39,-13.2453,0,-136.39,-13.2453,-136.39	1/1:37:0,36,1:0:0:36,1:1250,36:-112.13,-10.8371,0,-109.192,-7.53984,-108.891	1/2:17:0,7,10:0:0:7,10:242,356:-48.1334,-29.3709,-27.2637,-19.1039,0,-16.0936	1/2:19:0,4,15:0:0:4,15:131,528:-53.8916,-43.3359,-42.1318,-10.8878,0,-6.3723	1/2:161:0,76,85:0:0:76,85:2599,3044:-459.078,-248.489,-225.611,-210.879,0,-185.292	1/1:136:0,135,0:0:0:135,0:4526,0:-406.604,-40.6391,0,-406.604,-40.6391,-406.604	1/2:154:0,54,99:0:0:54,99:1848,3525:-437.202,-287.311,-271.055,-149.897,0,-120.095	1/2:121:0,48,73:0:0:48,73:1626,2599:-343.776,-212.092,-197.642,-131.971,0,-109.996	1/1:55:0,54,0:0:0:54,0:1809,0:-161.665,-16.2556,0,-161.665,-16.2556,-161.665	1/1:51:0,51,0:0:0:51,0:1694,0:-152.475,-15.3525,0,-152.475,-15.3525,-152.475	1/2:285:0,130,154:0:0:130,154:4397,5512:-805.128,-448.931,-409.798,-356.173,0,-309.815	1/1:161:0,159,0:0:0:159,0:5414,0:-485.559,-47.8638,0,-485.559,-47.8638,-485.559	1/1:25:0,25,0:0:0:25,0:849,0:-76.6325,-7.52575,0,-76.6325,-7.52575,-76.6325	1/1:377:0,374,0:0:0:374,0:12610,0:-1133.2,-112.585,0,-1133.2,-112.585,-1133.2	1/2:169:0,59,108:0:0:59,108:2015,3795:-472.048,-308.733,-290.972,-163.334,0,-130.823	1/1:109:0,108,0:0:0:108,0:3574,0:-321.066,-32.5112,0,-321.066,-32.5112,-321.066	1/2:12:0,7,5:0:0:7,5:231,180:-33.685,-15.0469,-12.9397,-18.9853,0,-17.4802	1/1:26:0,26,0:0:0:26,0:851,0:-76.5629,-7.82678,0,-76.5629,-7.82678,-76.5629	1/1:4:0,4,0:0:0:4,0:137,0:-12.6508,-1.20412,0,-12.6508,-1.20412,-12.6508	1/1:9:0,9,0:0:0:9,0:308,0:-28.0025,-2.70927,0,-28.0025,-2.70927,-28.0025	1/1:25:0,25,0:0:0:25,0:847,0:-75.4064,-7.52575,0,-75.4064,-7.52575,-75.4064	1/2:130:0,69,61:0:0:69,61:2360,2188:-370.048,-178.673,-157.902,-191.607,0,-173.245	1/2:111:0,38,73:0:0:38,73:1268,2591:-313.664,-211.309,-199.869,-102.579,0,-80.6036	1/1:42:0,42,0:0:0:42,0:1439,0:-128.94,-12.6433,0,-128.94,-12.6433,-128.94	1/1:1:0,1,0:0:0:1,0:24,0:-2.39931,-0.30103,0,-2.39931,-0.30103,-2.39931	1/1:307:0,304,0:0:0:304,0:10336,0:-928.111,-91.5131,0,-928.111,-91.5131,-928.111	1/1:25:0,25,0:0:0:25,0:869,0:-78.325,-7.52575,0,-78.325,-7.52575,-78.325	1/1:112:0,110,0:0:0:110,0:3758,0:-337.173,-33.1133,0,-337.173,-33.1133,-337.173	1/1:44:0,44,0:0:0:44,0:1494,0:-134.487,-13.2453,0,-134.487,-13.2453,-134.487	1/1:35:0,35,0:0:0:35,0:1182,0:-106.498,-10.5361,0,-106.498,-10.5361,-106.498	1/2:120:0,58,61:0:0:58,61:1932,2180:-333.997,-177.757,-160.297,-156.244,0,-137.882	1/2:122:0,59,63:0:0:59,63:2000,2233:-343.166,-181.773,-164.012,-161.738,0,-142.773	1/1:242:0,240,0:0:0:240,0:8152,0:-732.297,-72.2472,0,-732.297,-72.2472,-732.297	1/1:107:0,106,1:0:0:106,1:3596,36:-323.157,-31.9092,0,-320.219,-28.6119,-319.918	1/2:215:0,118,97:0:0:118,97:4021,3454:-607.574,-281.855,-246.334,-326.068,0,-296.868	1/1:64:0,64,0:0:0:64,0:2119,0:-190.57,-19.2659,0,-190.57,-19.2659,-190.57	1/2:11:0,3,8:0:0:3,8:108,288:-32.6643,-23.8592,-22.9561,-9.16481,0,-6.75657	1/1:132:0,132,0:0:0:132,0:4544,0:-406.142,-39.736,0,-406.142,-39.736,-406.142	1/1:73:0,72,0:0:0:72,0:2445,0:-219.693,-21.6742,0,-219.693,-21.6742,-219.693	1/2:18:0,12,6:0:0:12,6:400,212:-49.8363,-17.5685,-13.9561,-32.5656,0,-30.7594	1/2:118:1,56,60:1:34:56,60:1864,2140:-321.71,-171.696,-157.597,-147.556,0,-132.252	1/2:29:0,14,15:0:0:14,15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chr11	15048837	.	T	C	106639	PASS	AB=0.579783;ABP=135.37;AC=147;AF=0.798913;AN=184;AO=5364;CIGAR=1X;DP=6376;DPB=6376;DPRA=0;EPP=11650.8;EPPR=2194.03;GTI=4;LEN=1;MEANALT=1.03261;MQM=59.9931;MQMR=60;NS=92;NUMALT=1;ODDS=0.950557;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180887;QR=35971;RO=1009;RPL=5364;RPP=11650.8;RPPR=2194.03;RPR=0;RUN=1;SAF=5364;SAP=11650.8;SAR=0;SRF=1009;SRP=2194.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1232:-111.178,-10.8371,0	0/1:61:28,33:28:999:33:1105:-81.3851,0,-71.8617	1/1:63:0,63:0:0:63:2145:-193.313,-18.9649,0	0/1:96:30,66:30:1076:66:2261:-174.85,0,-68.254	1/1:20:0,20:0:0:20:676:-61.1543,-6.0206,0	1/1:31:0,31:0:0:31:1054:-95.1636,-9.33193,0	1/1:136:0,136:0:0:136:4594:-413.638,-40.9401,0	1/1:109:0,108:0:0:108:3633:-326.821,-32.5112,0	0/1:67:26,40:26:932:40:1302:-97.3458,0,-64.0769	1/1:87:0,87:0:0:87:2969:-267.446,-26.1896,0	1/1:28:0,28:0:0:28:918:-82.9218,-8.42884,0	0/1:45:19,26:19:665:26:840:-62.3504,0,-46.6264	0/1:31:14,17:14:496:17:554:-40.8368,0,-35.6423	1/1:50:0,50:0:0:50:1650:-148.778,-15.0515,0	0/1:17:11,6:11:392:6:195:-12.7522,0,-30.5025	1/1:22:0,22:0:0:22:723:-65.377,-6.62266,0	1/1:38:0,38:0:0:38:1191:-107.471,-11.4391,0	0/1:23:12,11:12:428:11:370:-26.7001,0,-31.9351	0/1:8:2,6:2:68:6:195:-15.4615,0,-4.04947	0/1:94:34,60:34:1220:60:2032:-154.85,0,-81.81	1/1:112:0,112:0:0:112:3803:-342.48,-33.7154,0	0/1:47:30,17:30:1068:17:577:-38.1006,0,-82.2837	0/1:94:49,45:49:1756:45:1513:-108.157,0,-130.027	1/1:152:0,152:0:0:152:5136:-462.4,-45.7566,0	1/1:64:0,64:0:0:64:2158:-194.482,-19.2659,0	0/1:253:103,150:103:3666:150:5151:-387.583,0,-253.984	1/1:225:0,225:0:0:225:7637:-687.401,-67.7318,0	1/1:10:0,10:0:0:10:335:-30.4745,-3.0103,0	1/1:209:0,209:0:0:209:7150:-643.577,-62.9153,0	0/1:120:46,74:46:1621:74:2498:-188.948,0,-110.053	1/1:195:0,195:0:0:195:6645:-598.157,-58.7009,0	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:4:0,4:0:0:4:131:-12.1135,-1.20412,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:145:69,76:69:2480:76:2546:-185.738,0,-179.804	0/1:145:50,95:50:1725:95:3195:-244.127,0,-111.878	1/1:19:0,19:0:0:19:632:-57.1922,-5.71957,0	.:.:.:.:.:.:.:.	1/1:91:0,91:0:0:91:3158:-284.449,-27.3937,0	1/1:18:0,18:0:0:18:587:-53.1386,-5.41854,0	1/1:72:0,72:0:0:72:2374:-213.916,-21.6742,0	1/1:37:0,37:0:0:37:1210:-109.194,-11.1381,0	1/1:25:0,25:0:0:25:830:-75.0079,-7.52575,0	0/1:62:23,39:23:824:39:1308:-99.3478,0,-55.8195	0/1:50:25,25:25:896:25:848:-61.5775,0,-65.9089	1/1:143:0,143:0:0:143:4890:-440.262,-43.0473,0	1/1:98:0,98:0:0:98:3335:-300.374,-29.5009,0	0/1:77:23,54:23:816:54:1826:-141.435,0,-50.5824	1/1:169:2,167:2:72:167:5622:-499.285,-44.0373,0	0/1:4:1,3:1:32:3:104:-8.49868,0,-1.99519	1/1:70:0,70:0:0:70:2427:-218.686,-21.0721,0	1/1:51:0,51:0:0:51:1737:-156.607,-15.3525,0	0/1:5:2,3:2:68:3:104:-8.19766,0,-4.95256	0/1:52:17,35:17:608:35:1157:-88.7708,0,-39.3985	0/1:59:23,36:23:828:36:1167:-87.5585,0,-57.0833	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:26:0,26:0:0:26:887:-80.1386,-7.82678,0	1/1:99:0,99:0:0:99:3383:-304.691,-29.802,0	0/1:81:50,31:50:1784:31:1019:-67.6232,0,-136.459	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:102:37,65:37:1328:65:2212:-168.636,0,-89.1172	1/1:244:2,242:2:72:242:8143:-726.082,-66.6146,0	0/1:45:19,26:19:676:26:862:-64.3378,0,-47.6216	1/1:40:0,40:0:0:40:1378:-124.312,-12.0412,0	0/1:156:61,95:61:2176:95:3212:-242.345,0,-149.146	1/1:94:0,93:0:0:93:3179:-285.981,-27.9958,0	0/1:15:5,10:5:180:10:330:-25.5044,0,-12.0366	1/1:80:0,80:0:0:80:2743:-247.114,-24.0824,0	1/1:54:0,54:0:0:54:1743:-157.141,-16.2556,0	0/1:26:12,14:12:428:14:488:-36.4236,0,-31.032	1/1:177:0,177:0:0:177:5992:-539.401,-53.2823,0	1/1:34:0,34:0:0:34:1142:-103.078,-10.235,0	1/1:277:0,277:0:0:277:9315:-838.354,-83.3853,0	0/1:71:33,38:33:1184:38:1322:-97.9049,0,-85.4952	1/1:51:0,51:0:0:51:1629:-146.88,-15.3525,0	0/1:36:13,23:13:468:23:763:-58.1405,0,-31.6226	0/1:11:1,10:1:36:10:356:-29.0699,0,-0.286945	0/1:44:14,30:14:504:30:1019:-78.7684,0,-32.4528	1/1:44:0,44:0:0:44:1495:-134.836,-13.2453,0	1/1:154:0,154:0:0:154:5229:-470.765,-46.3586,0	0/1:42:24,18:24:864:18:611:-42.666,0,-65.4393	1/1:14:0,14:0:0:14:465:-42.1672,-4.21442,0	1/1:23:0,23:0:0:23:760:-68.7075,-6.92369,0	0/1:56:19,37:19:680:37:1194:-90.8925,0,-44.6715	1/1:24:0,24:0:0:24:818:-73.9327,-7.22472,0	0/1:49:18,31:18:648:31:999:-75.4537,0,-43.9014	1/1:24:0,24:0:0:24:753:-68.0618,-7.22472,0	1/1:16:0,16:0:0:16:534:-48.3771,-4.81648,0	0/1:66:34,32:34:1216:32:1072:-76.9129,0,-89.8786	0/1:39:28,11:28:991:11:364:-21.3383,0,-77.7634	1/1:65:0,65:0:0:65:2126:-191.601,-19.567,0	1/1:37:0,37:0:0:37:1181:-106.577,-11.1381,0
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chr11	15446545	.	C	T	30669.4	PASS	AB=0.509359;ABP=5.69292;AC=39;AF=0.211957;AN=184;AO=1801;CIGAR=1X;DP=7175;DPB=7175;DPRA=1.36926;EPP=3887.82;EPPR=11527.4;GTI=3;LEN=1;MEANALT=1;MQM=59.7246;MQMR=54.7959;NS=92;NUMALT=1;ODDS=0.204085;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64539;QR=192536;RO=5371;RPL=3;RPP=3887.82;RPPR=11527.4;RPR=1798;RUN=1;SAF=0;SAP=3913.83;SAR=1801;SRF=0;SRP=11666;SRR=5371;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.646	0/1:72:39,33:39:1404:33:1184:-85.1926,0,-104.921	0/0:70:69,1:69:2468:1:36:0,-17.4755,-218.568	0/1:170:79,91:79:2831:91:3260:-242.415,0,-203.025	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.014	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.537	0/0:87:87,0:87:3124:0:0:0,-26.1896,-280.852	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.845	0/1:74:28,46:28:1008:46:1635:-125.157,0,-68.7175	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.305	0/0:51:51,0:51:1832:0:0:0,-15.3525,-164.515	0/1:64:36,28:36:1288:28:1000:-71.0495,0,-96.6457	0/1:72:27,45:27:957:45:1605:-123.057,0,-64.7271	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.026	0/1:47:20,27:20:720:27:968:-73.2856,0,-50.9133	0/0:65:65,0:65:2327:0:0:0,-19.5669,-209.392	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.359	0/1:54:25,29:25:881:29:1044:-78.0192,0,-63.2366	0/1:31:16,15:16:572:15:540:-39.6046,0,-42.4592	0/1:112:54,58:54:1925:58:2088:-154.467,0,-139.429	0/0:142:141,1:141:5064:1:36:0,-39.148,-451.43	0/1:139:46,93:46:1644:93:3344:-259.324,0,-106.189	0/1:83:43,40:43:1540:40:1440:-104.906,0,-112.834	0/0:95:94,0:94:3372:0:0:0,-28.2968,-302.999	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.595	0/1:231:94,137:94:3372:137:4913:-372.697,0,-233.485	0/0:89:89,0:89:3177:0:0:0,-26.7917,-283.028	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.101	0/0:132:132,0:132:4748:0:0:0,-39.736,-426.665	0/1:143:74,69:74:2645:69:2472:-179.682,0,-194.567	0/0:127:127,0:127:4564:0:0:0,-38.2308,-409.508	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.32664	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.89434	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83347	.:.:.:.:.:.:.:.	0/1:245:123,122:123:4409:122:4365:-319.244,0,-321.498	0/1:124:56,68:56:2000:68:2444:-182.882,0,-142.445	0/0:62:62,0:62:2232:0:0:0,-18.6639,-200.893	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2604	0/0:124:123,0:123:4407:0:0:0,-37.0267,-395.341	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.257	0/0:99:99,0:99:3556:0:0:0,-29.802,-319.714	0/0:78:78,0:78:2800:0:0:0,-23.4803,-251.544	0/0:60:60,0:60:2156:0:0:0,-18.0618,-193.706	0/1:89:51,38:51:1832:38:1368:-96.6153,0,-138.138	0/1:92:36,56:36:1296:56:1984:-151.138,0,-89.1236	0/0:125:125,0:125:4479:0:0:0,-37.6287,-402.43	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.589	0/1:98:53,45:53:1896:45:1612:-115.862,0,-141.21	0/0:149:148,0:148:5304:0:0:0,-44.5524,-475.861	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.92659	0/0:89:89,0:89:3204:0:0:0,-26.7917,-288.071	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.314	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79038	0/1:115:36,79:36:1281:79:2811:-218.605,0,-80.5589	0/1:31:16,15:16:576:15:540:-39.5727,0,-42.6871	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.7896	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.5718	0/0:33:33,0:33:1188:0:0:0,-9.93399,-106.783	0/1:128:62,66:62:2216:66:2376:-175.555,0,-160.915	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.535	0/1:193:83,110:83:2984:110:3956:-298.08,0,-210.013	0/0:120:120,0:120:4289:0:0:0,-36.1236,-384.633	0/1:59:30,29:30:1080:29:1044:-76.4078,0,-79.6807	0/0:75:75,0:75:2692:0:0:0,-22.5772,-241.217	0/1:181:121,60:121:4340:60:2156:-139.694,0,-335.437	0/0:68:66,2:66:2376:2:68:0,-14.0123,-207.108	0/1:20:14,6:14:504:6:216:-13.7675,0,-39.6474	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.18	0/0:92:92,0:92:3268:0:0:0,-27.6948,-293.365	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.6175	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.673	0/0:37:37,0:37:1332:0:0:0,-11.1381,-119.989	0/0:123:123,0:123:4394:0:0:0,-37.0267,-394.699	0/1:120:74,46:74:2656:46:1652:-112.842,0,-202.761	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.54	0/1:78:37,41:37:1323:41:1449:-107.22,0,-95.8358	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.4644	0/1:94:41,53:41:1472:53:1900:-142.977,0,-104.205	0/0:41:41,0:41:1449:0:0:0,-12.3422,-130.42	0/0:126:126,0:126:4528:0:0:0,-37.9298,-406.964	0/1:85:44,41:44:1576:41:1476:-107.545,0,-115.759	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.1526	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.371	0/1:169:95,74:95:3399:74:2660:-188.765,0,-252.619	0/0:41:41,0:41:1476:0:0:0,-12.3422,-132.987	0/1:64:34,30:34:1224:30:1080:-78.2473,0,-91.0735	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.269	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.7985	0/1:123:92,31:92:3308:31:1104:-62.6416,0,-260.442	0/1:85:29,56:29:1044:56:1993:-154.043,0,-68.3603	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.31	0/0:110:109,1:109:3909:1:36:0,-29.515,-347.785
chr11	15446570	.	T	C	112757	PASS	AB=0.490709;ABP=5.67329;AC=145;AF=0.788043;AN=184;AO=5399;CIGAR=1X;DP=7219;DPB=7219;DPRA=0;EPP=11726.8;EPPR=3942.06;GTI=3;LEN=1;MEANALT=1.06522;MQM=54.7325;MQMR=59.7238;NS=92;NUMALT=1;ODDS=0.296764;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192510;QR=64760;RO=1814;RPL=5399;RPP=11726.8;RPPR=3942.06;RPR=0;RUN=1;SAF=0;SAP=11726.8;SAR=5399;SRF=0;SRP=3942.06;SRR=1814;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1616:-145.456,-13.5464,0	0/1:78:36,42:36:1296:42:1508:-112.466,0,-93.4621	1/1:73:0,73:0:0:73:2616:-235.387,-21.9752,0	0/1:172:90,82:90:3198:82:2914:-209.883,0,-236.234	1/1:99:0,99:0:0:99:3514:-316.003,-29.802,0	1/1:57:1,56:1:36:56:1985:-175.105,-13.5604,0	1/1:86:0,86:0:0:86:3092:-277.916,-25.8886,0	1/1:49:0,49:0:0:49:1752:-157.89,-14.7505,0	0/1:75:45,30:45:1597:30:1050:-72.1852,0,-121.436	1/1:69:0,69:0:0:69:2453:-220.599,-20.7711,0	1/1:51:0,51:0:0:51:1821:-163.525,-15.3525,0	0/1:64:28,36:28:1008:36:1270:-95.0675,0,-71.7704	0/1:70:44,26:44:1576:26:936:-63.4472,0,-121.053	1/1:60:0,60:0:0:60:2156:-193.79,-18.0618,0	0/1:47:27,20:27:968:20:720:-50.9133,0,-73.2856	1/1:66:0,66:0:0:66:2360:-212.367,-19.868,0	1/1:58:0,58:0:0:58:2088:-187.8,-17.4597,0	0/1:54:29,25:29:1040:25:900:-64.95,0,-77.6587	0/1:31:16,15:16:572:15:540:-39.5814,0,-42.4815	0/1:113:58,54:58:2080:54:1914:-138.177,0,-153.388	1/1:145:1,144:1:36:144:5103:-454.833,-40.0511,0	0/1:140:94,46:94:3345:46:1644:-105.888,0,-259.113	0/1:81:39,42:39:1385:42:1495:-109.594,0,-100.557	1/1:93:0,93:0:0:93:3331:-299.633,-27.9958,0	1/1:54:0,54:0:0:54:1940:-174.521,-16.2556,0	0/1:235:140,95:140:5012:95:3397:-234.528,0,-380.4	1/1:89:0,88:0:0:88:3128:-279.922,-26.4906,0	1/1:42:0,42:0:0:42:1508:-135.865,-12.6433,0	1/1:134:0,134:0:0:134:4790:-430.253,-40.338,0	0/1:144:71,73:71:2544:73:2564:-187.261,0,-185.855	1/1:129:0,129:0:0:129:4579:-411.005,-38.8329,0	0/1:5:3,2:3:108:2:72:-5.32664,0,-8.57002	1/1:3:0,3:0:0:3:108:-9.89434,-0.90309,0	.:.:.:.:.:.:.:.	1/1:2:0,2:0:0:2:72:-6.83347,-0.60206,0	.:.:.:.:.:.:.:.	0/1:249:125,124:125:4465:124:4441:-323.02,0,-327.036	0/1:127:69,58:69:2476:58:2076:-148.415,0,-184.858	1/1:61:0,61:0:0:61:2184:-196.628,-18.3628,0	1/1:4:0,4:0:0:4:144:-13.2604,-1.20412,0	1/1:123:0,123:0:0:123:4393:-394.353,-37.0267,0	1/1:44:0,44:0:0:44:1572:-141.418,-13.2453,0	1/1:97:0,97:0:0:97:3469:-311.894,-29.1999,0	1/1:78:0,78:0:0:78:2799:-251.425,-23.4803,0	1/1:61:0,61:0:0:61:2180:-195.81,-18.3628,0	0/1:89:38,51:38:1364:51:1813:-136.434,0,-96.2552	0/1:92:55,37:55:1968:37:1332:-92.3587,0,-149.699	1/1:125:0,125:0:0:125:4458:-400.593,-37.6288,0	1/1:79:0,79:0:0:79:2813:-253.001,-23.7814,0	0/1:99:46,53:46:1656:53:1904:-141.624,0,-119.52	1/1:149:0,149:0:0:149:5305:-476.377,-44.8535,0	0/1:3:1,2:1:36:2:72:-5.92659,0,-2.69518	1/1:89:0,89:0:0:89:3181:-286.007,-26.7917,0	1/1:37:0,37:0:0:37:1282:-115.377,-11.1381,0	0/1:6:5,1:5:176:1:36:-1.79038,0,-14.3788	0/1:116:79,37:79:2808:37:1308:-82.6828,0,-218.036	0/1:32:15,17:15:532:17:608:-45.2618,0,-38.5651	0/1:5:1,4:1:36:4:144:-11.7896,0,-2.09312	1/1:10:0,10:0:0:10:360:-32.6979,-3.0103,0	1/1:33:0,33:0:0:33:1184:-106.424,-9.93399,0	0/1:127:66,61:66:2360:61:2172:-157.227,0,-174.418	1/1:5:0,5:0:0:5:180:-16.535,-1.50515,0	0/1:194:111,83:111:3930:83:2969:-208.208,0,-295.445	1/1:119:0,118:0:0:118:4225:-378.96,-35.5215,0	0/1:59:29,30:29:1032:30:1076:-79.3217,0,-75.3265	1/1:74:0,74:0:0:74:2658:-238.18,-22.2762,0	0/1:181:58,123:58:2053:123:4346:-335.6,0,-130.428	1/1:71:2,69:2:72:69:2465:-214.627,-14.5364,0	0/1:20:6,14:6:216:14:504:-39.6474,0,-13.7675	1/1:46:0,46:0:0:46:1644:-148.18,-13.8474,0	1/1:91:0,90:0:0:90:3209:-287.661,-27.0927,0	0/1:12:4,8:4:144:8:288:-22.6175,0,-9.70126	1/1:58:0,58:0:0:58:2076:-186.907,-17.4597,0	1/1:40:0,40:0:0:40:1406:-126.64,-12.0412,0	1/1:127:0,127:0:0:127:4560:-409.466,-38.2308,0	0/1:121:47,74:47:1684:74:2641:-201.127,0,-115.419	1/1:39:0,38:0:0:38:1352:-121.384,-11.4391,0	0/1:78:42,36:42:1473:36:1284:-92.3303,0,-109.379	0/1:10:5,5:5:176:5:180:-13.4644,0,-13.1747	0/1:97:54,43:54:1906:43:1528:-108.28,0,-142.612	1/1:42:0,42:0:0:42:1465:-131.914,-12.6433,0	1/1:131:0,131:0:0:131:4669:-418.879,-39.4349,0	0/1:84:41,43:41:1476:43:1544:-113.182,0,-107.846	1/1:30:0,30:0:0:30:1072:-96.672,-9.0309,0	1/1:81:1,80:1:36:80:2842:-251.85,-20.7852,0	0/1:170:75,95:75:2692:95:3343:-248.327,0,-191.342	1/1:42:0,42:0:0:42:1499:-135.086,-12.6433,0	0/1:65:31,34:31:1116:34:1187:-87.4418,0,-81.1847	1/1:69:0,68:0:0:68:2423:-217.535,-20.47,0	1/1:19:0,19:0:0:19:676:-61.0789,-5.71957,0	0/1:124:31,93:31:1116:93:3340:-263.019,0,-63.4216	0/1:83:54,29:54:1924:29:1044:-68.9624,0,-148.44	1/1:82:0,82:0:0:82:2879:-258.907,-24.6845,0	1/1:107:1,106:1:36:106:3770:-335.505,-28.6119,0
chr11	15483017	.	A	G	119270	PASS	AB=0.509886;ABP=5.45744;AC=140;AF=0.777778;AN=180;AO=5602;CIGAR=1X;DP=7021;DPB=7021;DPRA=15.7663;EPP=12167.6;EPPR=3082.16;GTI=2;LEN=1;MEANALT=1.01124;MQM=51.9932;MQMR=52.6171;NS=90;NUMALT=1;ODDS=6.80505;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=199794;QR=50833;RO=1418;RPL=5602;RPP=12167.6;RPPR=3082.16;RPR=0;RUN=1;SAF=5602;SAP=12167.6;SAR=0;SRF=1418;SRP=3082.16;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:216:-19.6832,-1.80618,0	0/1:120:58,62:58:2060:62:2181:-159.13,0,-147.969	1/1:30:0,30:0:0:30:1057:-94.9451,-9.0309,0	0/1:251:144,107:144:5148:107:3811:-267.013,0,-386.007	1/1:58:0,58:0:0:58:2036:-181.323,-17.4597,0	1/1:44:0,44:0:0:44:1584:-141.374,-13.2453,0	1/1:164:0,164:0:0:164:5858:-525.588,-49.3689,0	1/1:201:0,201:0:0:201:7154:-639.202,-60.507,0	0/1:107:49,58:49:1764:58:2054:-151.334,0,-125.214	1/1:233:0,233:0:0:233:8305:-744.689,-70.14,0	1/1:29:0,29:0:0:29:1044:-93.9909,-8.72987,0	0/1:45:12,33:12:432:33:1176:-91.8745,0,-25.4799	0/1:41:23,18:23:828:18:644:-45.3438,0,-62.0853	1/1:44:0,44:0:0:44:1556:-139.733,-13.2453,0	0/1:44:20,24:20:720:24:855:-63.882,0,-50.9301	1/1:30:0,30:0:0:30:1076:-96.721,-9.0309,0	1/1:51:0,51:0:0:51:1815:-162.489,-15.3525,0	0/1:45:26,19:26:936:19:656:-45.2673,0,-70.3018	0/1:27:16,11:16:568:11:384:-26.5945,0,-43.0623	0/1:139:65,74:65:2332:74:2647:-196.302,0,-167.705	1/1:117:0,117:0:0:117:4160:-372.889,-35.2205,0	0/1:37:24,13:24:864:13:468:-31.2909,0,-66.8859	0/1:45:22,23:22:788:23:824:-60.7895,0,-57.5252	1/1:86:0,86:0:0:86:3092:-276.823,-25.8886,0	1/1:51:0,51:0:0:51:1818:-163.252,-15.3525,0	0/1:269:109,160:109:3916:160:5696:-428.764,0,-271.116	1/1:94:0,94:0:0:94:3353:-300.455,-28.2968,0	1/1:26:0,26:0:0:26:936:-84.1278,-7.82678,0	1/1:56:0,56:0:0:56:2012:-181.055,-16.8577,0	0/1:114:46,68:46:1656:68:2441:-184.313,0,-114.617	1/1:137:0,137:0:0:137:4848:-434.621,-41.2411,0	0/1:6:3,3:3:108:3:108:-8.24366,0,-8.24366	0/1:11:1,10:1:36:10:345:-27.9951,0,-0.277898	1/1:7:0,7:0:0:7:248:-22.4603,-2.10721,0	1/1:7:0,7:0:0:7:248:-22.55,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.2414,-1.20412,0	0/1:149:78,71:78:2800:71:2544:-184.079,0,-206.883	0/1:167:78,89:78:2800:89:3192:-235.6,0,-201.099	1/1:38:0,38:0:0:38:1349:-120.231,-11.4391,0	.:.:.:.:.:.:.:.	1/1:186:0,186:0:0:186:6638:-595.265,-55.9916,0	1/1:11:0,11:0:0:11:392:-35.45,-3.31133,0	1/1:54:0,54:0:0:54:1914:-171.894,-16.2556,0	1/1:60:0,60:0:0:60:2136:-191.79,-18.0618,0	1/1:53:0,53:0:0:53:1896:-170.514,-15.9546,0	0/1:96:35,61:35:1256:61:2188:-167.801,0,-84.1061	0/1:67:27,40:27:972:40:1436:-108.675,0,-66.9801	1/1:202:0,202:0:0:202:7192:-645.883,-60.8081,0	1/1:129:0,129:0:0:129:4597:-412.233,-38.8329,0	0/1:137:61,76:61:2192:76:2721:-203.42,0,-155.651	1/1:194:0,194:0:0:194:6938:-622.956,-58.3998,0	0/1:13:4,9:4:140:9:324:-25.4243,0,-9.01514	1/1:50:0,50:0:0:50:1796:-160.687,-15.0515,0	1/1:17:0,17:0:0:17:597:-52.9959,-5.11751,0	0/1:12:6,6:6:201:6:201:-14.7147,0,-14.7147	0/1:108:54,54:54:1940:54:1927:-139.255,0,-141.66	0/1:17:10,7:10:360:7:252:-17.8788,0,-27.5804	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5401	1/1:28:0,28:0:0:28:1008:-90.5888,-8.42884,0	1/1:47:0,47:0:0:47:1688:-151.332,-14.1484,0	0/1:50:24,26:24:864:26:932:-69.0302,0,-62.9073	0/1:7:5,2:5:180:2:72:-4.71982,0,-14.4214	0/1:67:42,25:42:1512:25:896:-60.6455,0,-116.091	1/1:229:0,229:0:0:229:8200:-734.879,-68.9359,0	0/1:68:27,41:27:968:41:1476:-112.051,0,-66.7326	.:.:.:.:.:.:.:.	0/1:139:71,68:71:2533:68:2409:-174.036,0,-186.017	1/1:62:1,61:1:36:61:2186:-192.826,-15.0707,0	0/1:11:6,5:6:216:5:176:-12.8371,0,-16.4294	1/1:46:0,46:0:0:46:1627:-144.753,-13.8474,0	1/1:65:0,65:0:0:65:2332:-209.882,-19.567,0	.:.:.:.:.:.:.:.	1/1:127:0,127:0:0:127:4506:-402.457,-38.2308,0	1/1:98:0,98:0:0:98:3496:-312.756,-29.5009,0	1/1:169:0,169:0:0:169:6020:-537.583,-50.8741,0	0/1:59:35,24:35:1260:24:864:-60.2111,0,-95.7601	1/1:68:0,68:0:0:68:2395:-214.084,-20.47,0	0/1:12:7,5:7:252:5:180:-12.85,0,-19.2917	.:.:.:.:.:.:.:.	0/1:104:63,41:63:2260:41:1459:-99.7901,0,-171.768	1/1:75:0,75:0:0:75:2671:-239.279,-22.5773,0	1/1:256:0,256:0:0:256:9141:-820.398,-77.0637,0	0/1:79:38,41:38:1364:41:1469:-108.311,0,-99.1	1/1:42:0,42:0:0:42:1489:-133.893,-12.6433,0	1/1:59:0,59:0:0:59:2111:-189.499,-17.7608,0	0/1:97:47,50:47:1676:50:1800:-132.395,0,-121.249	1/1:34:0,34:0:0:34:1220:-108.913,-10.235,0	0/1:45:21,24:21:752:24:864:-63.86,0,-53.6146	1/1:51:0,51:0:0:51:1832:-163.677,-15.3525,0	1/1:9:0,9:0:0:9:324:-29.4221,-2.70927,0	0/1:34:21,13:21:743:13:460:-31.3996,0,-56.6161	0/1:44:34,9:34:1220:9:324:-16.1729,0,-96.6076	1/1:131:0,131:0:0:131:4672:-419.299,-39.4349,0	1/1:68:0,68:0:0:68:2415:-217.041,-20.47,0
chr11	15483019	.	T	C	20811.6	PASS	AB=0.475921;ABP=17.2325;AC=40;AF=0.222222;AN=180;AO=1350;CIGAR=1X;DP=6982;DPB=6982;DPRA=0.883341;EPP=2934.5;EPPR=12226.2;GTI=2;LEN=1;MEANALT=1.075;MQM=52.6104;MQMR=51.9821;NS=90;NUMALT=1;ODDS=1.91449;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46868;QR=201175;RO=5629;RPL=1350;RPP=2934.5;RPPR=12226.2;RPR=0;RUN=1;SAF=1350;SAP=2934.5;SAR=0;SRF=5629;SRP=12226.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6832	0/1:118:63,55:63:2247:55:1908:-135.452,0,-165.613	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.4137	0/1:241:108,133:108:3859:133:4603:-340.681,0,-274.315	0/0:57:57,0:57:2043:0:0:0,-17.1587,-181.081	0/0:45:45,0:45:1620:0:0:0,-13.5463,-144.595	0/0:163:163,0:163:5839:0:0:0,-49.0679,-523.739	0/0:194:194,0:194:6928:0:0:0,-58.3998,-618.857	0/1:109:60,49:60:2131:49:1697:-118.911,0,-157.823	0/0:232:232,0:232:8252:0:0:0,-69.839,-739.006	0/0:30:30,0:30:1076:0:0:0,-9.0309,-96.8611	0/1:45:34,11:34:1204:11:370:-19.9343,0,-94.4073	0/1:43:19,24:19:684:24:828:-61.5251,0,-47.931	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.127	0/1:42:24,18:24:856:18:621:-43.3071,0,-64.5755	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.3711	0/0:53:53,0:53:1895:0:0:0,-15.9546,-169.277	0/1:42:19,23:19:676:23:795:-58.7724,0,-47.957	0/1:26:10,16:10:360:16:568:-43.3633,0,-24.7291	0/1:136:74,62:74:2652:62:2171:-154.168,0,-197.654	0/0:118:118,0:118:4204:0:0:0,-35.5215,-376.403	0/1:34:12,21:12:432:21:726:-55.3223,0,-28.8994	0/1:44:23,21:23:815:21:710:-50.88,0,-60.2577	0/0:85:85,0:85:3052:0:0:0,-25.5875,-273.662	0/0:51:51,0:51:1832:0:0:0,-15.3525,-164.484	0/1:265:160,105:160:5718:105:3661:-249.45,0,-431.221	0/0:93:93,0:93:3331:0:0:0,-27.9958,-298.474	0/0:26:26,0:26:932:0:0:0,-7.82678,-83.7721	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.026	0/1:113:69,44:69:2468:44:1486:-99.6982,0,-186.907	0/0:136:136,0:136:4827:0:0:0,-40.9401,-432.601	0/1:6:3,3:3:108:3:108:-8.24366,0,-8.24366	0/1:11:10,1:10:360:1:36:-0.277899,0,-29.3506	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.0355	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6832	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0205	0/1:144:71,73:71:2556:73:2539:-184.959,0,-186.659	0/1:163:89,74:89:3177:74:2588:-183.513,0,-235.184	0/0:39:39,0:39:1383:0:0:0,-11.7402,-123.266	.:.:.:.:.:.:.:.	0/0:187:187,0:187:6692:0:0:0,-56.2926,-599.773	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.45	0/0:57:57,0:57:2043:0:0:0,-17.1587,-183.097	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.013	0/0:55:55,0:55:1955:0:0:0,-16.5566,-175.025	0/1:95:61,33:61:2188:33:1110:-71.1722,0,-168.044	0/1:67:40,26:40:1421:26:924:-62.6523,0,-107.219	0/0:202:202,0:202:7211:0:0:0,-60.8081,-646.977	0/0:129:129,0:129:4644:0:0:0,-38.8329,-417.322	0/1:137:75,62:75:2677:62:2156:-152.563,0,-199.473	0/0:194:194,0:194:6930:0:0:0,-58.3998,-622.495	0/1:13:10,3:10:341:3:108:-6.14749,0,-26.9387	0/0:50:50,0:50:1791:0:0:0,-15.0515,-160.242	0/0:17:17,0:17:603:0:0:0,-5.11751,-53.5391	0/1:12:6,6:6:216:6:208:-15.3607,0,-16.0709	0/1:108:56,52:56:2001:52:1833:-132.089,0,-145.358	0/1:17:7,10:7:252:10:343:-26.0462,0,-17.8788	1/1:5:0,5:0:0:5:180:-16.5401,-1.50515,0	0/0:28:28,0:28:999:0:0:0,-8.42884,-89.779	0/0:47:47,0:47:1688:0:0:0,-14.1484,-151.814	0/1:49:26,23:26:928:23:824:-59.6165,0,-68.9734	0/1:7:2,5:2:72:5:171:-13.5989,0,-4.71982	0/1:65:26,39:26:936:39:1318:-99.2714,0,-64.8371	0/0:234:234,0:234:8366:0:0:0,-70.441,-749.752	0/1:70:42,28:42:1512:28:980:-67.2291,0,-114.679	.:.:.:.:.:.:.:.	0/1:136:66,70:66:2351:70:2418:-176.616,0,-169.749	0/0:62:61,1:61:2184:1:36:0,-15.0707,-192.56	0/1:11:5,6:5:180:6:216:-16.4294,0,-13.1991	0/0:48:48,0:48:1715:0:0:0,-14.4494,-152.656	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.169	.:.:.:.:.:.:.:.	0/0:129:129,0:129:4628:0:0:0,-38.8329,-412.682	0/0:99:99,0:99:3524:0:0:0,-29.802,-315.054	0/0:168:168,0:168:5997:0:0:0,-50.573,-535.535	0/1:56:24,32:24:860:32:1108:-83.0278,0,-60.7562	0/0:68:68,0:68:2423:0:0:0,-20.47,-216.309	0/1:11:5,6:5:180:6:198:-14.7558,0,-13.151	.:.:.:.:.:.:.:.	0/1:101:41,60:41:1467:60:2082:-156.759,0,-101.392	0/0:76:76,0:76:2704:0:0:0,-22.8783,-241.945	0/0:261:261,0:261:9331:0:0:0,-78.5688,-836.543	0/1:75:40,35:40:1420:35:1228:-88.106,0,-105.164	0/0:42:42,0:42:1500:0:0:0,-12.6433,-134.883	0/0:61:61,0:61:2161:0:0:0,-18.3628,-193.975	0/1:96:51,45:51:1832:45:1568:-112.17,0,-135.573	0/0:35:35,0:35:1256:0:0:0,-10.536,-112.134	0/1:42:24,18:24:860:18:622:-42.9071,0,-64.4128	0/0:51:51,0:51:1819:0:0:0,-15.3525,-162.532	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.0636	0/1:33:13,20:13:460:20:682:-51.5541,0,-31.7006	0/1:41:9,32:9:324:32:1140:-90.1773,0,-17.1218	0/0:133:133,0:133:4780:0:0:0,-40.037,-428.982	0/0:71:71,0:71:2544:0:0:0,-21.3731,-228.599
chr11	15483062	.	A	C	26802.7	PASS	AB=0.502067;ABP=3.12699;AC=39;AF=0.211957;AN=184;AO=1584;CIGAR=1X;DP=7710;DPB=7710;DPRA=1.07737;EPP=3254.19;EPPR=12900.2;GTI=1;LEN=1;MEANALT=1.075;MQM=44.3441;MQMR=58.286;NS=92;NUMALT=1;ODDS=0.188864;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56757;QR=219461;RO=6122;RPL=1562;RPP=3254.19;RPPR=12900.2;RPR=22;RUN=1;SAF=0;SAP=3442.62;SAR=1584;SRF=0;SRP=13296.8;SRR=6122;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.512	0/1:84:41,43:41:1463:43:1544:-110.471,0,-106.344	0/0:194:194,0:194:6963:0:0:0,-58.3998,-626.212	0/1:297:153,144:153:5473:144:5168:-368.445,0,-402.826	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.409	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.397	0/0:157:157,0:157:5587:0:0:0,-47.2617,-502.716	0/0:121:121,0:121:4329:0:0:0,-36.4246,-389.392	0/1:84:52,32:52:1872:32:1133:-74.621,0,-143.296	0/0:101:101,0:101:3632:0:0:0,-30.404,-326.946	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8349	0/1:64:29,34:29:1029:34:1224:-88.778,0,-73.5795	0/1:51:21,30:21:756:30:1076:-79.7469,0,-52.8385	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.9926	0/1:57:31,26:31:1116:26:936:-66.2202,0,-83.5668	0/0:41:41,0:41:1448:0:0:0,-12.3422,-130.515	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.0343	0/1:10:4,6:4:144:6:216:-16.1656,0,-10.2996	0/1:12:6,6:6:216:6:216:-15.7532,0,-16.1628	0/1:180:92,88:92:3308:88:3125:-223.59,0,-243.624	0/0:159:159,0:159:5708:0:0:0,-47.8638,-513.221	0/1:81:24,57:24:864:57:2029:-155.37,0,-53.6225	0/1:130:70,59:70:2516:59:2120:-149.217,0,-187.299	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.855	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.637	0/1:282:159,123:159:5701:123:4412:-302.222,0,-428.12	0/0:161:161,0:161:5769:0:0:0,-48.4658,-519.209	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1279	0/0:78:78,0:78:2784:0:0:0,-23.4803,-249.632	0/1:104:58,46:58:2084:46:1652:-115.522,0,-156.502	0/0:113:113,0:113:4049:0:0:0,-34.0164,-364.441	0/1:7:6,1:6:216:1:36:-1.44131,0,-17.6377	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4158	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7351	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0225	0/1:148:60,88:60:2160:88:3156:-233.822,0,-149.946	0/1:89:46,43:46:1656:43:1540:-109.699,0,-122.485	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3384	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:147:147,0:147:5260:0:0:0,-44.2514,-473.311	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.652	0/0:85:85,0:85:3033:0:0:0,-25.5875,-272.993	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8747	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.778	0/1:124:65,58:65:2332:58:2084:-146.477,0,-172.47	0/1:146:54,92:54:1940:92:3300:-247.085,0,-130.873	0/0:180:179,1:179:6387:1:36:0,-50.6369,-570.925	0/0:134:134,0:134:4816:0:0:0,-40.338,-433.404	0/1:137:77,60:77:2757:60:2148:-149.211,0,-207.053	0/0:150:150,0:150:5375:0:0:0,-45.1545,-483.123	0/1:2:1,1:1:36:1:36:-2.94646,0,-2.99577	0/0:124:124,0:124:4444:0:0:0,-37.3277,-399.993	0/0:69:69,0:69:2480:0:0:0,-20.7711,-222.683	0/1:10:7,3:7:248:3:108:-6.84852,0,-19.5489	0/1:159:84,75:84:3016:75:2692:-190.79,0,-223.61	0/1:40:25,15:25:900:15:521:-34.3149,0,-69.2252	0/1:5:2,3:2:72:3:108:-8.39599,0,-5.32966	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6091	0/0:82:82,0:82:2944:0:0:0,-24.6845,-264.649	0/1:47:21,26:21:756:26:921:-67.5294,0,-54.1215	1/1:2:0,2:0:0:2:72:-6.74218,-0.60206,0	0/1:79:37,42:37:1328:42:1512:-110.35,0,-96.0058	0/0:232:232,0:232:8307:0:0:0,-69.839,-746.916	0/1:56:18,38:18:629:38:1368:-104.721,0,-40.0723	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.312	0/1:188:98,90:98:3528:90:3220:-228.578,0,-261.082	0/0:167:165,2:165:5917:2:72:0,-43.5298,-525.534	0/1:14:8,6:8:288:6:216:-15.3024,0,-22.0502	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.705	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.513	.:.:.:.:.:.:.:.	0/0:147:147,0:147:5276:0:0:0,-44.2514,-474.686	0/0:85:85,0:85:3043:0:0:0,-25.5875,-273.848	0/0:177:177,0:177:6335:0:0:0,-53.2823,-569.543	0/1:103:44,59:44:1584:59:2116:-156.955,0,-111.783	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.006	0/1:8:3,5:3:108:5:180:-13.8023,0,-7.66411	.:.:.:.:.:.:.:.	0/1:94:44,50:44:1557:50:1792:-130.481,0,-112.025	0/0:122:122,0:122:4356:0:0:0,-36.7257,-391.655	0/0:285:285,0:285:10232:0:0:0,-85.7935,-918.627	0/1:51:26,25:26:932:25:900:-64.731,0,-68.7921	0/0:29:29,0:29:1044:0:0:0,-8.72987,-93.9663	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.406	0/1:71:35,36:35:1260:36:1292:-93.6647,0,-92.2725	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.8779	0/1:39:25,14:25:900:14:504:-32.9903,0,-69.5557	0/0:66:66,0:66:2376:0:0:0,-19.868,-213.46	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:35:19,16:19:684:16:576:-39.8845,0,-51.2834	0/1:57:18,39:18:648:39:1400:-106.814,0,-41.4859	0/0:302:301,0:301:10796:0:0:0,-90.61,-969.702	0/0:76:76,0:76:2732:0:0:0,-22.8783,-245.992
chr11	15483068	.	A	T	133054	PASS	AB=0.500159;ABP=3.01099;AC=145;AF=0.788043;AN=184;AO=6163;CIGAR=1X;DP=7735;DPB=7735;DPRA=42.489;EPP=13325.1;EPPR=3407.88;GTI=2;LEN=1;MEANALT=1;MQM=58.2666;MQMR=44.3302;NS=92;NUMALT=1;ODDS=0.426394;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220338;QR=56337;RO=1572;RPL=6156;RPP=13325.1;RPPR=3407.88;RPR=7;RUN=1;SAF=0;SAP=13385.8;SAR=6163;SRF=0;SRP=3416.56;SRR=1572;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:63:0,63:0:0:63:2238:-201.507,-18.9649,0	0/1:82:42,40:42:1512:40:1432:-104.287,0,-108.231	1/1:195:0,195:0:0:195:6979:-627.793,-58.7009,0	0/1:298:144,154:144:5164:154:5478:-403.013,0,-368.283	1/1:41:0,41:0:0:41:1468:-132.408,-12.3422,0	1/1:36:0,36:0:0:36:1296:-116.747,-10.8371,0	1/1:157:0,157:0:0:157:5583:-502.47,-47.2617,0	1/1:124:0,124:0:0:124:4414:-397.171,-37.3277,0	0/1:85:32,53:32:1152:53:1896:-145.182,0,-75.5748	1/1:101:0,101:0:0:101:3606:-324.635,-30.404,0	1/1:24:0,24:0:0:24:860:-77.7124,-7.22472,0	0/1:65:35,30:35:1256:30:1080:-77.9032,0,-91.3771	0/1:53:30,23:30:1072:23:828:-58.6426,0,-78.8248	1/1:24:0,24:0:0:24:864:-77.9926,-7.22472,0	0/1:58:26,32:26:936:32:1144:-85.7777,0,-65.9192	1/1:40:0,40:0:0:40:1436:-129.398,-12.0412,0	1/1:20:0,20:0:0:20:720:-65.0343,-6.0206,0	0/1:10:6,4:6:216:4:144:-10.2996,0,-16.1656	0/1:11:5,6:5:180:6:216:-16.4638,0,-12.8853	0/1:181:87,94:87:3119:94:3368:-248.535,0,-222.748	1/1:164:0,164:0:0:164:5838:-525.18,-49.3689,0	0/1:80:56,24:56:1999:24:860:-53.5634,0,-152.953	0/1:132:61,71:61:2188:71:2525:-187.516,0,-154.69	1/1:79:0,79:0:0:79:2810:-253.074,-23.7814,0	1/1:96:0,96:0:0:96:3441:-309.838,-28.8989,0	0/1:281:122,159:122:4384:159:5708:-429.053,0,-299.856	1/1:160:0,160:0:0:160:5714:-514.31,-48.1648,0	1/1:19:0,19:0:0:19:684:-61.8894,-5.71957,0	1/1:78:0,78:0:0:78:2770:-249.048,-23.4803,0	0/1:105:46,59:46:1635:59:2124:-159.792,0,-113.743	1/1:115:0,115:0:0:115:4128:-371.522,-34.6185,0	0/1:7:1,6:1:36:6:205:-16.6726,0,-1.44131	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:212:-19.4158,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.7351,-3.0103,0	1/1:7:0,7:0:0:7:252:-23.0225,-2.10721,0	0/1:150:90,60:90:3219:60:2156:-148.985,0,-238.938	0/1:91:43,48:43:1529:48:1720:-127.64,0,-108.122	1/1:21:0,21:0:0:21:756:-68.3384,-6.32163,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:147:0,147:0:0:147:5273:-474.391,-44.2514,0	1/1:14:0,14:0:0:14:504:-45.652,-4.21442,0	1/1:85:0,85:0:0:85:3030:-272.681,-25.5876,0	1/1:23:0,23:0:0:23:828:-74.8265,-6.92369,0	1/1:47:0,47:0:0:47:1677:-151.086,-14.1484,0	0/1:123:57,66:57:2044:66:2364:-175.652,0,-143.27	0/1:143:91,52:91:3268:52:1845:-123.232,0,-245.144	1/1:183:1,182:1:36:182:6467:-578.31,-51.54,0	1/1:139:0,139:0:0:139:4969:-447.168,-41.8432,0	0/1:137:60,77:60:2151:77:2768:-208.044,0,-149.095	1/1:150:0,150:0:0:150:5335:-479.945,-45.1545,0	0/1:2:1,1:1:36:1:36:-2.99577,0,-2.94646	1/1:126:0,126:0:0:126:4528:-407.543,-37.9298,0	1/1:70:0,70:0:0:70:2498:-224.432,-21.0721,0	0/1:10:3,7:3:108:7:252:-19.8728,0,-6.84852	0/1:159:75,84:75:2687:84:3001:-222.26,0,-190.352	0/1:39:13,26:13:468:26:932:-72.4039,0,-30.1323	0/1:5:3,2:3:108:2:72:-5.32966,0,-8.39599	1/1:11:0,11:0:0:11:392:-35.6091,-3.31133,0	1/1:80:0,80:0:0:80:2872:-258.172,-24.0824,0	0/1:47:26,21:26:924:21:756:-54.1215,0,-67.8376	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.74218	0/1:77:42,35:42:1504:35:1241:-88.7823,0,-110.241	1/1:234:0,234:0:0:234:8353:-751.279,-70.441,0	0/1:55:37,18:37:1332:18:648:-42.0882,0,-101.828	1/1:4:0,4:0:0:4:144:-13.312,-1.20412,0	0/1:182:87,95:87:3128:95:3416:-252.771,0,-222.587	1/1:166:2,164:2:68:164:5813:-516.578,-43.5801,0	0/1:14:6,8:6:216:8:284:-21.6867,0,-15.3024	1/1:66:0,66:0:0:66:2364:-212.865,-19.868,0	1/1:39:0,39:0:0:39:1389:-125.162,-11.7402,0	.:.:.:.:.:.:.:.	1/1:148:0,148:0:0:148:5303:-477.108,-44.5524,0	1/1:86:0,86:0:0:86:3088:-277.896,-25.8886,0	1/1:181:0,181:0:0:181:6476:-582.184,-54.4864,0	0/1:103:59,44:59:2112:44:1580:-111.423,0,-156.636	1/1:63:0,63:0:0:63:2260:-203.528,-18.9649,0	0/1:8:5,3:5:180:3:108:-7.66411,0,-13.8023	.:.:.:.:.:.:.:.	0/1:91:47,44:47:1666:44:1569:-114.009,0,-120.246	1/1:119:0,119:0:0:119:4265:-383.658,-35.8226,0	1/1:284:0,284:0:0:284:10170:-913.475,-85.4925,0	0/1:51:25,26:25:896:26:936:-69.1527,0,-64.3967	1/1:31:0,31:0:0:31:1113:-100.194,-9.33193,0	1/1:39:0,39:0:0:39:1389:-125.292,-11.7402,0	0/1:70:35,35:35:1260:35:1256:-92.2136,0,-91.061	1/1:21:0,21:0:0:21:756:-68.2384,-6.32163,0	0/1:40:14,26:14:504:26:928:-71.7721,0,-32.6893	1/1:66:0,66:0:0:66:2357:-212.075,-19.868,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:33:16,17:16:576:17:612:-45.4085,0,-40.4866	0/1:57:39,18:39:1396:18:648:-41.4859,0,-106.507	1/1:304:0,304:0:0:304:10860:-975.124,-91.5131,0	1/1:76:0,76:0:0:76:2724:-245.306,-22.8783,0
chr11	15934778	.	T	C	153231	PASS	AB=0.509193;ABP=5.765;AC=151;AF=0.811828;AN=186;AO=7189;CIGAR=1X;DP=9042;DPB=9042;DPRA=0;EPP=15613.7;EPPR=4011.55;GTI=0;LEN=1;MEANALT=1.07527;MQM=59.5209;MQMR=59.4946;NS=93;NUMALT=1;ODDS=0.952387;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255632;QR=65642;RO=1846;RPL=0;RPP=15613.7;RPPR=4011.55;RPR=7189;RUN=1;SAF=0;SAP=15613.7;SAR=7189;SRF=0;SRP=4011.55;SRR=1846;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:85:0,84:0:0:84:2989:-268.814,-25.2865,0	0/1:86:45,41:45:1608:41:1472:-106.888,0,-119.089	1/1:194:0,194:0:0:194:6906:-621.224,-58.3998,0	1/1:345:0,345:0:0:345:12299:-1105.9,-103.855,0	1/1:84:0,84:0:0:84:2978:-268.248,-25.2865,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:96:42,54:42:1465:54:1927:-144.643,0,-103.212	1/1:140:0,140:0:0:140:4962:-446.454,-42.1442,0	1/1:114:0,114:0:0:114:4004:-360.52,-34.3174,0	1/1:77:0,77:0:0:77:2734:-246.246,-23.1793,0	1/1:26:0,26:0:0:26:915:-82.6407,-7.82678,0	1/1:81:0,81:0:0:81:2865:-257.872,-24.3834,0	0/1:66:27,39:27:968:39:1404:-106.786,0,-67.5694	1/1:31:0,31:0:0:31:1089:-98.3127,-9.33193,0	0/1:71:39,32:39:1387:32:1148:-82.2443,0,-103.75	1/1:32:0,32:0:0:32:1140:-102.775,-9.63296,0	1/1:28:0,28:0:0:28:992:-89.5926,-8.42884,0	0/1:36:16,20:16:563:20:707:-53.1037,0,-40.1539	0/1:12:5,7:5:180:7:252:-19.4083,0,-12.9314	0/1:212:93,119:93:3312:119:4223:-316.356,0,-234.437	0/1:171:68,103:68:2432:103:3651:-277.302,0,-167.654	0/1:112:71,41:71:2493:41:1472:-99.0426,0,-190.397	1/1:132:1,130:1:36:130:4620:-411.076,-36.1965,0	1/1:78:0,78:0:0:78:2788:-251.057,-23.4803,0	1/1:77:0,77:0:0:77:2706:-243.764,-23.1793,0	0/1:224:104,120:104:3707:120:4278:-317.731,0,-266.375	1/1:273:0,273:0:0:273:9744:-876.747,-82.1812,0	1/1:30:0,30:0:0:30:1072:-96.7917,-9.0309,0	0/1:355:193,162:193:6867:162:5802:-415.385,0,-510.931	1/1:81:0,81:0:0:81:2904:-261.57,-24.3834,0	1/1:119:0,119:0:0:119:4205:-378.436,-35.8226,0	1/1:7:0,7:0:0:7:242:-22.1114,-2.10721,0	1/1:5:0,5:0:0:5:176:-16.1831,-1.50515,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:12:0,12:0:0:12:432:-39.1953,-3.61236,0	0/1:180:90,90:90:3190:90:3135:-228.008,0,-233.112	1/1:119:0,119:0:0:119:4252:-382.607,-35.8226,0	0/1:23:13,10:13:464:10:360:-25.8206,0,-34.4675	.:.:.:.:.:.:.:.	0/1:157:62,95:62:2216:95:3378:-256.872,0,-152.248	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:207:0,207:0:0:207:7365:-662.658,-62.3132,0	1/1:44:0,44:0:0:44:1552:-139.95,-13.2453,0	1/1:46:0,45:0:0:45:1584:-142.474,-13.5464,0	1/1:142:0,142:0:0:142:5057:-455.239,-42.7463,0	1/1:133:0,133:0:0:133:4682:-421.361,-40.037,0	0/1:179:79,100:79:2807:100:3565:-267.124,0,-198.481	0/1:135:75,60:75:2625:60:2136:-151.828,0,-195.226	0/1:121:60,61:60:2144:61:2183:-160.296,0,-156.769	0/1:166:91,75:91:3207:75:2675:-190.967,0,-238.628	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:147:0,147:0:0:147:5217:-469.63,-44.2514,0	1/1:86:0,86:0:0:86:3070:-276.518,-25.8886,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:195:0,195:0:0:195:6868:-617.16,-58.7009,0	1/1:87:0,87:0:0:87:3091:-278.379,-26.1896,0	0/1:5:1,4:1:36:4:144:-11.8019,0,-2.09312	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:66:0,66:0:0:66:2322:-209.148,-19.868,0	1/1:79:1,78:1:36:78:2779:-246.723,-20.1841,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:232:0,231:0:0:231:8216:-739.129,-69.5379,0	1/1:157:1,156:1:36:156:5540:-495.088,-43.6634,0	1/1:49:0,49:0:0:49:1752:-157.947,-14.7505,0	1/1:155:0,155:0:0:155:5516:-496.216,-46.6597,0	1/1:178:1,177:1:36:177:6319:-564.95,-49.9851,0	1/1:155:0,155:0:0:155:5523:-497.077,-46.6597,0	0/1:9:1,8:1:32:8:288:-23.5488,0,-0.426875	1/1:70:0,69:0:0:69:2430:-218.552,-20.7711,0	1/1:42:0,42:0:0:42:1479:-133.387,-12.6433,0	1/1:8:0,8:0:0:8:288:-26.267,-2.40824,0	0/1:186:110,75:110:3910:75:2665:-184.034,0,-295.813	0/1:103:56,47:56:2008:47:1672:-119.691,0,-149.962	0/1:141:40,101:40:1419:101:3604:-282.111,0,-85.5518	1/1:192:0,192:0:0:192:6840:-615.575,-57.7978,0	0/1:90:36,54:36:1292:54:1935:-147.309,0,-89.4454	1/1:88:1,87:1:36:87:3092:-274.882,-22.8924,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:115:66,49:66:2351:49:1747:-122.873,0,-177.229	0/1:143:61,82:61:2168:82:2928:-220.7,0,-151.374	0/1:203:101,102:101:3611:102:3660:-266.93,0,-264.08	0/1:44:25,19:25:896:19:676:-47.9165,0,-67.715	0/1:57:29,28:29:1036:28:1000:-73.1505,0,-76.3909	1/1:45:0,45:0:0:45:1596:-143.919,-13.5464,0	0/1:120:69,51:69:2464:51:1816:-127.573,0,-185.877	0/1:27:14,13:14:492:13:464:-33.9533,0,-36.4845	1/1:57:0,57:0:0:57:2031:-183.045,-17.1587,0	1/1:65:0,65:0:0:65:2308:-207.948,-19.567,0	1/1:9:0,9:0:0:9:316:-28.7742,-2.70927,0	0/1:32:14,18:14:504:18:635:-47.844,0,-36.0651	0/1:59:40,19:40:1428:19:684:-44.1292,0,-111.056	1/1:203:0,202:0:0:202:7155:-643.427,-60.8081,0	1/1:121:0,121:0:0:121:4324:-389.306,-36.4246,0
chr11	15934802	.	A	T	30569.2	PASS	AB=0.487779;ABP=7.84027;AC=33;AF=0.177419;AN=186;AO=1820;CIGAR=1X;DP=9007;DPB=9007;DPRA=1.32594;EPP=3911.78;EPPR=15390.7;GTI=2;LEN=1;MEANALT=1.13514;MQM=59.4984;MQMR=59.5006;NS=93;NUMALT=1;ODDS=0.491757;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65066;QR=256880;RO=7178;RPL=5;RPP=3911.78;RPPR=15399.3;RPR=1815;RUN=1;SAF=0;SAP=3955.09;SAR=1820;SRF=1;SRP=15581.2;SRR=7177;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:83:83,0:83:2958:0:0:0,-24.9855,-266.38	0/1:86:42,44:42:1504:44:1554:-114.237,0,-109.766	0/0:194:194,0:194:6964:0:0:0,-58.3998,-626.421	0/0:354:354,0:354:12660:0:0:0,-106.565,-1138.21	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.188	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:96:53,43:53:1892:43:1540:-109.959,0,-141.652	0/0:133:133,0:133:4734:0:0:0,-40.037,-426.216	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.112	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.141	0/0:29:27,0:27:972:0:0:0,-8.12781,-87.0322	0/0:80:80,0:80:2876:0:0:0,-24.0824,-258.862	0/1:64:37,27:37:1328:27:972:-68.532,0,-100.556	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.387	0/1:70:32,38:32:1152:38:1360:-101.624,0,-82.9057	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.244	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4355	0/1:37:21,16:21:741:16:572:-40.6671,0,-55.8597	0/1:13:8,5:8:284:5:179:-12.5404,0,-21.9817	0/1:210:119,90:119:4260:90:3228:-227.423,0,-320.225	0/1:172:105,67:105:3764:67:2408:-165.194,0,-287.132	0/1:107:39,67:39:1392:67:2392:-183.222,0,-93.2919	0/0:135:134,1:134:4816:1:36:0,-37.0408,-428.055	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.397	0/0:75:75,0:75:2691:0:0:0,-22.5772,-242.371	0/1:225:122,102:122:4376:102:3637:-259.718,0,-326.176	0/0:272:272,0:272:9760:0:0:0,-81.8802,-878.187	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.274	0/1:353:161,192:161:5756:192:6876:-512.424,0,-411.852	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.086	0/0:117:117,0:117:4191:0:0:0,-35.2205,-377.175	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0243	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:4,3:4:144:3:100:-7.22323,0,-11.2064	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9568	0/1:177:89,88:89:3159:88:3160:-231.314,0,-231.072	0/0:119:119,0:119:4255:0:0:0,-35.8226,-382.107	0/1:21:9,12:9:324:12:432:-32.1927,0,-23.1842	.:.:.:.:.:.:.:.	0/1:157:94,63:94:3364:63:2249:-155.215,0,-255.549	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:202:202,0:202:7255:0:0:0,-60.8081,-652.779	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.752	0/0:40:40,0:40:1402:0:0:0,-12.0412,-126.451	0/0:147:147,0:147:5252:0:0:0,-44.2514,-472.77	0/0:130:130,0:130:4626:0:0:0,-39.1339,-416.424	0/1:174:95,79:95:3408:79:2832:-201.949,0,-254.511	0/1:137:61,76:61:2192:76:2672:-199.311,0,-156.263	0/1:118:61,57:61:2184:57:2052:-149.392,0,-161.289	0/1:163:73,89:73:2595:89:3175:-236.731,0,-184.575	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:147:147,0:147:5271:0:0:0,-44.2514,-474.307	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.02	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:191:191,0:191:6768:0:0:0,-57.4967,-606.172	0/0:85:84,0:84:3012:0:0:0,-25.2865,-270.962	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4183	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:65:65,0:65:2310:0:0:0,-19.5669,-208.158	0/0:82:81,1:81:2895:1:36:0,-21.0872,-257.151	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:230:230,0:230:8231:0:0:0,-69.2369,-739.363	0/0:149:149,0:149:5348:0:0:0,-44.8535,-481.419	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.896	0/0:156:156,0:156:5581:0:0:0,-46.9607,-501.779	0/0:178:177,1:177:6347:1:36:0,-49.9851,-567.591	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.729	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6042	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.028	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.066	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.267	0/1:188:76,112:76:2707:112:4024:-305.494,0,-187.263	0/1:103:49,53:49:1756:53:1869:-137.387,0,-127.181	0/1:147:106,41:106:3769:41:1468:-88.1614,0,-295.141	0/0:193:193,0:193:6912:0:0:0,-58.0988,-622.043	0/1:92:56,36:56:2012:36:1287:-88.4171,0,-153.634	0/0:88:87,1:87:3101:1:36:0,-22.8924,-275.693	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:112:48,64:48:1724:64:2291:-172.734,0,-121.708	0/1:142:81,61:81:2903:61:2177:-153.419,0,-218.663	0/1:205:103,102:103:3685:102:3664:-268.245,0,-268.575	0/1:42:18,24:18:644:24:864:-65.4393,0,-45.6411	0/1:57:29,28:29:1044:28:989:-72.1608,0,-77.1099	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.712	0/1:121:54,67:54:1929:67:2404:-180.178,0,-137.435	0/1:26:12,14:12:432:14:496:-37.1393,0,-31.3862	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.332	0/0:66:65,0:65:2327:0:0:0,-19.5669,-209.301	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3766	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/1:59:19,40:19:680:40:1423:-110.605,0,-43.768	0/0:201:201,0:201:7170:0:0:0,-60.507,-645.196	0/0:120:120,0:120:4308:0:0:0,-36.1236,-387.86
chr11	16291220	.	G	C,T	73678.3	PASS	AB=0.477117,0.521831;ABP=11.6562,10.8795;AC=146,38;AF=0.793478,0.206522;AN=184;AO=2850,994;CIGAR=1X,1X;DP=3851;DPB=3851;DPRA=0,1.45526;EPP=6191.71,2161.45;EPPR=7.35324;GTI=2;LEN=1,1;MEANALT=1.47826,2.025;MQM=35.5688,45.166;MQMR=48;NS=92;NUMALT=2;ODDS=0.756182;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=101753,35619;QR=59;RO=2;RPL=0,0;RPP=6191.71,2161.45;RPPR=7.35324;RPR=2850,994;RUN=1,1;SAF=2850,994;SAP=6191.71,2161.45;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6,0:0:0:6,0:216,0:-17.18,-1.80618,0,-17.18,-1.80618,-17.18	1/2:20:0,14,6:0:0:14,6:496,212:-51.943,-17.1433,-12.9289,-35.1339,0,-33.3277	1/1:37:0,37,0:0:0:37,0:1328,0:-104.169,-11.1381,0,-104.169,-11.1381,-104.169	1/2:74:0,37,37:0:0:37,37:1328,1324:-204.814,-106.448,-95.31,-98.7059,0,-87.5678	1/1:10:0,10,0:0:0:10,0:356,0:-29.3376,-3.0103,0,-29.3376,-3.0103,-29.3376	1/1:9:0,9,0:0:0:9,0:324,0:-25.6138,-2.70927,0,-25.6138,-2.70927,-25.6138	1/1:33:0,33,0:0:0:33,0:1171,0:-97.821,-9.93399,0,-97.821,-9.93399,-97.821	1/1:36:0,36,0:0:0:36,0:1276,0:-98.1639,-10.8371,0,-98.1639,-10.8371,-98.1639	1/2:57:0,29,28:0:0:29,28:1040,991:-151.417,-78.7962,-70.0663,-72.9492,0,-64.5203	1/1:59:0,58,1:0:0:58,1:2072,36:-172.756,-17.4597,0,-169.854,-14.2022,-169.553	1/1:20:0,20,0:0:0:20,0:720,0:-59.7695,-6.0206,0,-59.7695,-6.0206,-59.7695	1/2:66:0,34,32:0:0:34,32:1203,1152:-175.912,-91.595,-81.36,-84.6474,0,-75.0145	1/2:57:0,31,26:0:0:31,26:1112,936:-150.126,-74.144,-64.8121,-76.3108,0,-68.484	1/1:31:0,31,0:0:0:31,0:1099,0:-89.2358,-9.33193,0,-89.2358,-9.33193,-89.2358	1/2:45:0,23,22:0:0:23,22:824,792:-123.196,-62.5233,-55.5996,-61.0102,0,-54.3875	1/1:37:0,37,0:0:0:37,0:1316,0:-105.338,-11.1381,0,-105.338,-11.1381,-105.338	1/1:19:0,19,0:0:0:19,0:675,0:-53.1258,-5.71957,0,-53.1258,-5.71957,-53.1258	1/2:26:0,14,12:0:0:14,12:496,432:-68.4898,-34.5671,-30.3526,-34.2512,0,-30.6388	1/2:18:0,10,7:0:0:10,7:360,252:-45.0457,-19.964,-16.9537,-25.0724,0,-22.9652	1/2:41:0,18,23:0:0:18,23:640,813:-114.079,-65.7752,-60.3567,-48.643,0,-41.7193	1/1:62:0,62,0:0:0:62,0:2214,0:-178.382,-18.6639,0,-178.382,-18.6639,-178.382	1/2:39:0,9,30:0:0:9,30:320,1080:-111.554,-86.9137,-84.2044,-24.9813,0,-15.9504	1/2:24:0,6,18:0:0:6,18:216,648:-68.7542,-52.5869,-50.7807,-16.506,0,-11.0874	1/1:7:0,7,0:0:0:7,0:252,0:-20.7754,-2.10721,0,-20.7754,-2.10721,-20.7754	1/1:24:0,24,0:0:0:24,0:852,0:-68.2589,-7.22472,0,-68.2589,-7.22472,-68.2589	1/2:166:0,73,93:0:0:73,93:2600,3324:-468.505,-268.821,-246.846,-200.029,0,-172.033	1/1:95:0,95,0:0:0:95,0:3404,0:-275.849,-28.5979,0,-275.849,-28.5979,-275.849	1/1:21:0,21,0:0:0:21,0:747,0:-61.0722,-6.32163,0,-61.0722,-6.32163,-61.0722	1/1:90:0,89,0:0:0:89,0:3192,0:-270.547,-26.7917,0,-270.547,-26.7917,-270.547	1/2:58:0,26,32:0:0:26,32:928,1152:-159.408,-92.561,-84.7342,-67.1815,0,-57.5485	1/1:57:0,57,0:0:0:57,0:2036,0:-167.867,-17.1587,0,-167.867,-17.1587,-167.867	.:.:.:.:.:.:.:.	1/1:5:0,5,0:0:0:5,0:180,0:-14.9323,-1.50515,0,-14.9323,-1.50515,-14.9323	1/1:4:0,4,0:0:0:4,0:140,0:-11.3933,-1.20412,0,-11.3933,-1.20412,-11.3933	1/1:1:0,1,0:0:0:1,0:36,0:-3.12364,-0.30103,0,-3.12364,-0.30103,-3.12364	1/1:4:0,4,0:0:0:4,0:144,0:-11.5575,-1.20412,0,-11.5575,-1.20412,-11.5575	1/2:170:0,90,80:0:0:90,80:3215,2872:-478.626,-232.233,-205.14,-246.74,0,-222.658	1/2:50:0,18,32:0:0:18,32:648,1135:-138.304,-91.143,-85.7245,-47.4939,0,-37.8609	1/1:15:0,15,0:0:0:15,0:528,0:-41.9989,-4.51545,0,-41.9989,-4.51545,-41.9989	1/1:2:0,2,0:0:0:2,0:72,0:-6.1677,-0.60206,0,-6.1677,-0.60206,-6.1677	1/1:23:0,23,0:0:0:23,0:820,0:-67.1177,-6.92369,0,-67.1177,-6.92369,-67.1177	1/1:17:0,17,0:0:0:17,0:608,0:-49.7893,-5.11751,0,-49.7893,-5.11751,-49.7893	1/1:51:0,51,0:0:0:51,0:1824,0:-147.838,-15.3525,0,-147.838,-15.3525,-147.838	1/1:37:0,37,0:0:0:37,0:1328,0:-111.341,-11.1381,0,-111.341,-11.1381,-111.341	1/1:41:0,41,0:0:0:41,0:1468,0:-122.618,-12.3422,0,-122.618,-12.3422,-122.618	1/2:35:0,21,14:0:0:21,14:748,504:-98.0922,-40.9984,-34.6768,-57.4416,0,-53.2272	1/2:31:0,13,18:0:0:13,18:468,648:-83.6984,-51.6755,-47.7621,-32.3483,0,-26.9297	1/1:74:0,73,1:0:0:73,1:2612,36:-217.019,-21.9752,0,-214.117,-18.7176,-213.816	1/1:60:0,60,0:0:0:60,0:2132,0:-178.164,-18.0618,0,-178.164,-18.0618,-178.164	1/2:61:0,39,22:0:0:39,22:1384,792:-168.642,-64.1938,-52.4537,-104.795,0,-98.1723	1/1:16:0,16,0:0:0:16,0:576,0:-48.2375,-4.81648,0,-48.2375,-4.81648,-48.2375	1/2:13:0,9,4:0:0:9,4:320,144:-35.4685,-11.9628,-9.25349,-23.8518,0,-22.6476	1/1:20:0,20,0:0:0:20,0:720,0:-56.5958,-6.0206,0,-56.5958,-6.0206,-56.5958	1/1:20:0,20,0:0:0:20,0:716,0:-61.6934,-6.0206,0,-61.6934,-6.0206,-61.6934	1/2:5:0,4,1:0:0:4,1:144,21:-11.3145,-1.79556,-0.591441,-9.74586,0,-9.44483	1/2:44:0,16,28:0:0:16,28:576,1000:-122.195,-80.2767,-75.4602,-42.2528,0,-33.824	1/2:10:0,2,8:0:0:2,8:72,288:-28.9864,-23.5697,-22.9676,-5.75562,0,-3.34738	1/2:4:0,3,1:0:0:3,1:108,36:-11.5881,-3.25759,-2.3545,-8.68299,0,-8.38196	1/1:7:0,7,0:0:0:7,0:252,0:-21.2025,-2.10721,0,-21.2025,-2.10721,-21.2025	1/1:43:0,43,0:0:0:43,0:15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chr11	16291229	.	AGAT	GGAC,AGAC	74618.5	PASS	AB=0.47468,0.521228;ABP=13.8965,10.6621;AC=145,39;AF=0.788043,0.211957;AN=184;AO=2894,1021;CIGAR=1X2M1X,3M1X;DP=3934;DPB=3934;DPRA=0,1.41129;EPP=6287.25,2220.08;EPPR=0;GTI=2;LEN=4,1;MEANALT=1.63043,2.21951;MQM=35.6057,45.1998;MQMR=0;NS=92;NUMALT=2;ODDS=0.990192;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=102390,36606;QR=0;RO=0;RPL=0,0;RPP=6287.25,2220.08;RPPR=0;RPR=2894,1021;RUN=1,1;SAF=2894,1021;SAP=6287.25,2220.08;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7,0:0:0:7,0:241,0:-19.3629,-2.10721,0,-19.3629,-2.10721,-19.3629	1/2:21:0,14,7:0:0:14,7:498,252:-55.1568,-20.3101,-16.0956,-35.1837,0,-33.0765	1/1:38:0,38,0:0:0:38,0:1339,0:-105.785,-11.4391,0,-105.785,-11.4391,-105.785	1/2:74:0,37,37:0:0:37,37:1326,1332:-205.414,-107.126,-95.988,-98.629,0,-87.4908	1/1:10:0,10,0:0:0:10,0:353,0:-29.1647,-3.0103,0,-29.1647,-3.0103,-29.1647	1/1:9:0,9,0:0:0:9,0:323,0:-25.581,-2.70927,0,-25.581,-2.70927,-25.581	1/1:33:0,33,0:0:0:33,0:1173,0:-98.0825,-9.93399,0,-98.0825,-9.93399,-98.0825	1/1:38:0,37,0:0:0:37,0:1287,0:-100.805,-11.1381,0,-100.805,-11.1381,-100.805	1/2:58:0,28,29:0:0:28,29:995,1044:-152.261,-82.7222,-74.2934,-69.6206,0,-60.8907	1/1:60:0,58,1:0:0:58,1:2054,36:-172.042,-17.4597,0,-169.139,-14.5474,-168.838	1/1:21:0,21,0:0:0:21,0:735,0:-61.7516,-6.32163,0,-61.7516,-6.32163,-61.7516	1/2:72:0,38,34:0:0:38,34:1326,1207:-189.48,-95.9395,-84.5004,-93.8682,0,-83.6332	1/2:58:0,30,27:0:0:30,27:1074,972:-150.701,-76.7451,-67.7142,-74.0342,0,-65.9064	1/1:31:0,30,0:0:0:30,0:1070,0:-87.2297,-9.0309,0,-87.2297,-9.0309,-87.2297	1/2:45:0,24,21:0:0:24,21:855,756:-122.942,-61.328,-54.1033,-61.9525,0,-55.6309	1/1:37:0,37,0:0:0:37,0:1316,0:-105.653,-11.1381,0,-105.653,-11.1381,-105.653	1/1:21:0,21,0:0:0:21,0:749,0:-58.6825,-6.32163,0,-58.6825,-6.32163,-58.6825	1/2:27:0,14,13:0:0:14,13:503,464:-71.3773,-37.1643,-32.9499,-34.5404,0,-30.627	1/2:18:0,10,8:0:0:10,8:360,288:-48.1992,-23.1175,-20.1072,-25.4148,0,-23.0066	1/2:42:0,18,24:0:0:18,24:636,864:-118.048,-69.9973,-64.5787,-48.3923,0,-41.1676	1/1:63:0,63,0:0:0:63,0:2210,0:-179.126,-18.9649,0,-179.126,-18.9649,-179.126	1/2:38:0,9,29:0:0:9,29:324,1044:-109.173,-84.2942,-81.5849,-25.2231,0,-16.4933	1/2:24:0,7,17:0:0:7,17:239,608:-67.0322,-49.345,-47.2378,-18.0131,0,-12.8955	1/1:7:0,7,0:0:0:7,0:252,0:-20.7754,-2.10721,0,-20.7754,-2.10721,-20.7754	1/1:26:0,26,0:0:0:26,0:929,0:-73.6382,-7.82678,0,-73.6382,-7.82678,-73.6382	1/2:169:0,74,95:0:0:74,95:2629,3407:-477.611,-275.64,-253.364,-202.316,0,-173.719	1/1:96:0,96,0:0:0:96,0:3431,0:-278.249,-28.8989,0,-278.249,-28.8989,-278.249	1/1:21:0,21,0:0:0:21,0:731,0:-60.3272,-6.32163,0,-60.3272,-6.32163,-60.3272	1/1:92:0,91,0:0:0:91,0:3225,0:-273.987,-27.3937,0,-273.987,-27.3937,-273.987	1/2:59:0,26,33:0:0:26,33:910,1180:-160.954,-94.7875,-86.9607,-66.4986,0,-56.5646	1/1:58:0,56,0:0:0:56,0:1973,0:-163.821,-16.8577,0,-163.821,-16.8577,-163.821	.:.:.:.:.:.:.:.	1/1:5:0,5,0:0:0:5,0:180,0:-14.9323,-1.50515,0,-14.9323,-1.50515,-14.9323	1/1:4:0,4,0:0:0:4,0:141,0:-11.4422,-1.20412,0,-11.4422,-1.20412,-11.4422	1/1:2:0,2,0:0:0:2,0:66,0:-5.64998,-0.60206,0,-5.64998,-0.60206,-5.64998	1/1:4:0,4,0:0:0:4,0:138,0:-11.28,-1.20412,0,-11.28,-1.20412,-11.28	1/2:172:0,90,81:0:0:90,81:3189,2908:-480.173,-234.906,-207.813,-245.331,0,-220.947	1/2:51:0,18,33:0:0:18,33:640,1180:-141.578,-94.8329,-89.4144,-47.0776,0,-37.1436	1/1:16:0,16,0:0:0:16,0:567,0:-45.0292,-4.81648,0,-45.0292,-4.81648,-45.0292	1/1:2:0,2,0:0:0:2,0:72,0:-6.1677,-0.60206,0,-6.1677,-0.60206,-6.1677	1/1:25:0,25,0:0:0:25,0:880,0:-72.1578,-7.52575,0,-72.1578,-7.52575,-72.1578	1/1:17:0,17,0:0:0:17,0:605,0:-49.6172,-5.11751,0,-49.6172,-5.11751,-49.6172	1/1:51:0,51,0:0:0:51,0:1808,0:-146.923,-15.3525,0,-146.923,-15.3525,-146.923	1/1:37:0,37,0:0:0:37,0:1316,0:-110.612,-11.1381,0,-110.612,-11.1381,-110.612	1/1:42:0,42,0:0:0:42,0:1502,0:-125.823,-12.6433,0,-125.823,-12.6433,-125.823	1/2:39:0,23,16:0:0:23,16:796,576:-108.015,-46.8378,-39.9141,-61.5226,0,-56.7061	1/2:33:0,13,20:0:0:13,20:468,716:-88.7493,-57.0669,-53.1535,-32.0042,0,-25.9836	1/1:76:0,75,1:0:0:75,1:2638,36:-220.249,-22.5773,0,-217.346,-19.3197,-217.045	1/1:60:0,60,0:0:0:60,0:2134,0:-178.509,-18.0618,0,-178.509,-18.0618,-178.509	1/2:61:0,40,21:0:0:40,21:1409,756:-167.571,-61.2921,-49.2509,-106.625,0,-100.304	1/1:17:0,17,0:0:0:17,0:606,0:-50.9201,-5.11751,0,-50.9201,-5.11751,-50.9201	1/2:13:0,9,4:0:0:9,4:314,144:-35.0965,-11.9628,-9.25349,-23.4784,0,-22.2742	1/1:21:0,21,0:0:0:21,0:745,0:-58.9279,-6.32163,0,-58.9279,-6.32163,-58.9279	1/1:20:0,20,0:0:0:20,0:689,0:-59.7208,-6.0206,0,-59.7208,-6.0206,-59.7208	1/2:6:0,5,1:0:0:5,1:164,36:-14.603,-3.20167,-1.69652,-11.7412,0,-11.4402	1/2:46:0,16,29:0:0:16,29:549,1035:-123.181,-82.7076,-77.8912,-40.4459,0,-31.7161	1/2:10:0,2,8:0:0:2,8:72,288:-28.9864,-23.5697,-22.9676,-5.75562,0,-3.34738	1/2:4:0,3,1:0:0:3,1:108,32:-11.2407,-2.88203,-1.97894,-8.68299,0,-8.38196	1/1:8:0,8,0:0:0:8,0:286,0:-24.2108,-2.40824,0,-24.2108,-2.40824,-24.2108	1/1:43:0,43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chr11	16989641	.	A	C	87049.1	PASS	AB=0.428939;ABP=122.444;AC=147;AF=0.781915;AN=188;AO=4186;CIGAR=1X;DP=5758;DPB=5758;DPRA=6.86858;EPP=9092.79;EPPR=3407.88;GTI=4;LEN=1;MEANALT=1.04301;MQM=59.9845;MQMR=60;NS=94;NUMALT=1;ODDS=0.522091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=148679;QR=55779;RO=1568;RPL=0;RPP=9092.79;RPPR=3407.88;RPR=4186;RUN=1;SAF=0;SAP=9092.79;SAR=4186;SRF=0;SRP=3407.88;SRR=1568;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,24:0:0:24:855:-76.9488,-7.22472,0	0/1:85:51,34:51:1823:34:1188:-81.6346,0,-138.763	1/1:100:0,100:0:0:100:3553:-319.98,-30.103,0	0/1:96:54,42:54:1912:42:1504:-106.756,0,-143.456	1/1:44:1,43:1:36:43:1531:-134.484,-9.64705,0	1/1:29:0,29:0:0:29:1013:-91.4794,-8.72987,0	1/1:61:0,61:0:0:61:2166:-195.206,-18.3628,0	1/1:90:0,90:0:0:90:3232:-291.101,-27.0927,0	0/1:70:43,27:43:1522:27:964:-66.0047,0,-116.2	1/1:45:0,45:0:0:45:1588:-143.208,-13.5464,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:52:15,37:15:528:37:1307:-102.277,0,-32.1978	0/1:36:23,13:23:816:13:449:-29.9004,0,-62.9246	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:28:18,10:18:636:10:358:-24.134,0,-49.1392	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:16:0,16:0:0:16:563:-50.9992,-4.81648,0	0/1:22:16,6:16:576:6:212:-12.8021,0,-45.5523	0/1:18:11,7:11:392:7:248:-17.2457,0,-30.2015	0/1:253:149,104:149:5299:104:3706:-257.581,0,-400.885	1/1:98:0,98:0:0:98:3508:-315.93,-29.5009,0	0/1:100:78,22:78:2759:22:792:-41.5027,0,-218.447	0/1:54:25,29:25:891:29:1032:-76.9379,0,-64.2532	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:87:0,87:0:0:87:3066:-276.166,-26.1896,0	0/1:263:142,120:142:5083:120:4262:-304.529,0,-378.384	1/1:156:0,156:0:0:156:5536:-498.367,-46.9607,0	1/1:15:0,15:0:0:15:528:-47.8514,-4.51545,0	1/1:118:0,118:0:0:118:4183:-376.652,-35.5215,0	0/1:95:47,48:47:1676:48:1711:-125.677,0,-122.529	1/1:85:0,85:0:0:85:3016:-271.669,-25.5876,0	0/1:11:9,2:9:302:2:72:-3.52539,0,-24.1938	1/1:16:0,16:0:0:16:563:-50.9992,-4.81648,0	1/1:6:0,6:0:0:6:212:-19.4229,-1.80618,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:130:71,58:71:2517:58:2055:-146.028,0,-187.589	0/1:103:69,34:69:2459:34:1216:-78.7405,0,-190.558	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:79:0,79:0:0:79:2800:-252.242,-23.7814,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:120:0,120:0:0:120:4289:-386.187,-36.1236,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:109:53,56:53:1900:56:1978:-145.479,0,-138.466	0/1:104:65,39:65:2323:39:1371:-92.378,0,-178.022	1/1:149:0,149:0:0:149:5304:-477.496,-44.8535,0	1/1:77:0,77:0:0:77:2734:-246.213,-23.1793,0	0/1:97:72,25:72:2564:25:896:-51.7604,0,-201.808	1/1:102:0,102:0:0:102:3629:-326.815,-30.7051,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:89:0,89:0:0:89:3147:-283.455,-26.7917,0	1/1:37:0,37:0:0:37:1303:-117.568,-11.1381,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:101:56,45:56:1965:45:1597:-113.615,0,-146.717	0/1:31:18,13:18:635:13:449:-31.4056,0,-48.145	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:13:0,13:0:0:13:462:-41.9165,-3.91339,0	1/1:36:0,36:0:0:36:1274:-114.962,-10.8371,0	0/1:58:25,33:25:900:33:1180:-89.0483,0,-63.8613	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:139:72,67:72:2584:67:2386:-173.153,0,-190.966	1/1:123:0,122:0:0:122:4369:-393.024,-36.7257,0	0/1:32:18,14:18:639:14:496:-35.3413,0,-48.2053	1/1:42:0,42:0:0:42:1499:-135.204,-12.6433,0	0/1:91:43,48:43:1540:48:1720:-127.692,0,-111.499	1/1:95:2,93:2:72:93:3309:-291.191,-21.7611,0	0/1:11:4,7:4:144:7:243:-18.8962,0,-10.0023	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:22:0,22:0:0:22:772:-69.7994,-6.62266,0	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	1/1:195:0,195:0:0:195:6915:-622.411,-58.7009,0	1/1:67:0,67:0:0:67:2373:-213.771,-20.169,0	1/1:66:1,65:1:36:65:2306:-204.202,-16.2697,0	0/1:85:47,38:47:1679:38:1356:-96.7529,0,-125.809	1/1:83:2,81:2:72:81:2880:-252.599,-18.1488,0	0/1:66:41,25:41:1438:25:892:-60.7317,0,-109.846	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/1:66:49,17:49:1728:17:607:-35.0936,0,-135.934	1/1:71:0,71:0:0:71:2527:-227.682,-21.3731,0	1/1:150:0,150:0:0:150:5317:-478.666,-45.1545,0	0/1:63:30,33:30:1054:33:1163:-86.0112,0,-76.2043	1/1:21:0,21:0:0:21:730:-66.0194,-6.32163,0	1/1:18:0,18:0:0:18:627:-56.7544,-5.41854,0	0/1:66:44,22:44:1568:22:766:-49.3905,0,-121.544	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:40:23,17:23:819:17:583:-40.7512,0,-61.9904	1/1:29:0,29:0:0:29:1028:-92.833,-8.72987,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:56:31,25:31:1100:25:881:-62.7495,0,-82.4526	0/1:33:19,14:19:680:14:504:-35.7641,0,-51.5952	1/1:85:0,85:0:0:85:2992:-269.511,-25.5876,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0
chr11	17350070	.	T	C	178424	PASS	AB=0.479034;ABP=22.1321;AC=150;AF=0.797872;AN=188;AO=7758;CIGAR=1X;DP=10378;DPB=10378;DPRA=0;EPP=16849.3;EPPR=5655.38;GTI=4;LEN=1;MEANALT=1.05319;MQM=59.9725;MQMR=59.9855;NS=94;NUMALT=1;ODDS=0.824758;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=271119;QR=92665;RO=2615;RPL=7051;RPP=11268;RPPR=2479.68;RPR=707;RUN=1;SAF=7051;SAP=11268;SAR=707;SRF=2172;SRP=2485.42;SRR=443;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:97:0,97:0:0:97:3363:-302.8,-29.1999,0	0/1:86:52,34:52:1868:34:1180:-80.6131,0,-142.511	1/1:87:0,87:0:0:87:3007:-270.861,-26.1896,0	0/1:184:90,94:90:3182:94:3283:-240.304,0,-231.216	1/1:96:0,96:0:0:96:3394:-305.677,-28.8989,0	1/1:43:0,43:0:0:43:1514:-136.552,-12.9443,0	1/1:109:0,108:0:0:108:3789:-340.851,-32.5112,0	1/1:185:0,185:0:0:185:6486:-583.838,-55.6906,0	0/1:203:116,87:116:4098:87:3050:-213.621,0,-307.898	1/1:84:0,84:0:0:84:2879:-259.347,-25.2865,0	1/1:77:0,77:0:0:77:2675:-240.997,-23.1793,0	0/1:124:66,58:66:2333:58:2031:-145.735,0,-172.901	0/1:98:51,47:51:1808:47:1650:-119.285,0,-133.501	1/1:64:0,64:0:0:64:2199:-198.156,-19.2659,0	0/1:86:39,47:39:1388:47:1621:-120.288,0,-99.3303	1/1:63:0,63:0:0:63:2146:-193.407,-18.9649,0	1/1:31:0,31:0:0:31:1052:-94.9831,-9.33193,0	0/1:36:20,16:20:707:16:555:-39.439,0,-53.1175	0/1:34:12,22:12:432:22:767:-59.1144,0,-28.9862	0/1:293:126,167:126:4447:167:5857:-439.048,0,-312.2	1/1:169:0,169:0:0:169:5923:-533.185,-50.8741,0	0/1:193:128,64:128:4537:64:2276:-146.945,0,-350.34	0/1:147:87,60:87:3076:60:2123:-147.087,0,-232.817	1/1:73:0,73:0:0:73:2548:-229.572,-21.9752,0	1/1:106:0,106:0:0:106:3690:-332.301,-31.9092,0	0/1:443:227,216:227:8050:216:7631:-553.478,0,-591.144	1/1:237:0,237:0:0:237:8272:-744.511,-71.3441,0	1/1:37:0,37:0:0:37:1283:-115.767,-11.1381,0	1/1:346:0,345:0:0:345:12140:-1092.15,-103.855,0	0/1:99:50,49:50:1744:49:1721:-125.368,0,-127.437	1/1:87:0,87:0:0:87:3040:-273.833,-26.1896,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:33:0,33:0:0:33:1142:-103.082,-9.93399,0	1/1:7:0,7:0:0:7:233:-21.2943,-2.10721,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:19:0,19:0:0:19:675:-61.077,-5.71957,0	0/1:519:256,263:256:9069:263:9251:-676.346,0,-659.962	0/1:148:81,67:81:2860:67:2383:-170.175,0,-213.085	1/1:57:1,56:1:36:56:1926:-170.015,-13.5604,0	1/1:8:0,8:0:0:8:269:-24.5361,-2.40824,0	1/1:141:0,141:0:0:141:4903:-441.431,-42.4452,0	1/1:50:0,50:0:0:50:1740:-156.88,-15.0515,0	1/1:185:0,185:0:0:185:6458:-581.314,-55.6906,0	1/1:106:0,106:0:0:106:3741:-336.893,-31.9092,0	1/1:82:1,81:1:36:81:2801:-248.543,-21.0862,0	0/1:210:107,102:107:3817:102:3608:-261.521,0,-280.452	0/1:84:31,53:31:1108:53:1827:-139.418,0,-74.7445	1/1:131:0,131:0:0:131:4596:-413.809,-39.4349,0	1/1:89:0,89:0:0:89:3128:-281.748,-26.7917,0	0/1:78:40,38:40:1404:38:1356:-98.8601,0,-103.172	1/1:241:1,240:1:36:240:8398:-752.239,-68.95,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:100:0,100:0:0:100:3519:-316.865,-30.103,0	1/1:116:0,116:0:0:116:4089:-368.198,-34.9195,0	0/1:13:8,5:8:288:5:171:-11.8121,0,-22.354	0/1:128:80,48:80:2834:48:1697:-113.461,0,-216.767	0/1:57:34,23:34:1216:23:811:-56.1513,0,-92.5879	0/1:20:5,15:5:180:15:532:-42.1925,0,-10.5315	1/1:29:1,28:1:36:28:984:-85.2751,-5.1316,0	1/1:100:0,100:0:0:100:3494:-314.675,-30.103,0	0/1:111:47,64:47:1672:64:2233:-167.821,0,-117.353	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:300:177,123:177:6287:123:4354:-301.727,0,-475.618	1/1:167:0,167:0:0:167:5770:-519.426,-50.272,0	0/1:65:26,39:26:913:39:1361:-103.219,0,-62.9171	1/1:85:0,85:0:0:85:2926:-263.576,-25.5876,0	0/1:245:143,102:143:5071:102:3569:-247.667,0,-382.785	1/1:113:0,113:0:0:113:3907:-351.826,-34.0164,0	0/1:32:26,6:26:923:6:212:-9.79184,0,-73.7538	1/1:37:0,36:0:0:36:1255:-112.892,-10.8371,0	1/1:120:0,120:0:0:120:4219:-379.898,-36.1236,0	0/1:23:18,5:18:644:5:167:-8.43472,0,-51.3669	1/1:149:1,148:1:36:148:5152:-460.233,-41.2552,0	1/1:86:2,84:2:72:84:2924:-256.559,-19.0519,0	1/1:139:0,139:0:0:139:4876:-439.002,-41.8432,0	0/1:111:55,56:55:1951:56:1958:-143.08,0,-142.451	1/1:136:0,136:0:0:136:4754:-428.024,-40.9401,0	0/1:113:34,79:34:1203:79:2769:-215.437,0,-74.5586	0/1:18:8,10:8:284:10:347:-26.1451,0,-20.4848	0/1:98:46,52:46:1624:52:1831:-135.569,0,-116.945	1/1:110:1,109:1:36:109:3846:-342.739,-29.515,0	1/1:209:0,209:0:0:209:7351:-661.644,-62.9153,0	0/1:74:38,36:38:1347:36:1267:-92.0557,0,-99.2533	1/1:76:0,76:0:0:76:2636:-237.489,-22.8783,0	1/1:61:0,61:0:0:61:2125:-191.517,-18.3628,0	0/1:179:91,88:91:3202:88:3064:-222.109,0,-234.507	1/1:40:0,40:0:0:40:1378:-124.313,-12.0412,0	0/1:104:47,57:47:1663:57:1976:-146.803,0,-118.65	1/1:77:0,77:0:0:77:2616:-235.688,-23.1793,0	1/1:36:0,36:0:0:36:1251:-112.891,-10.8371,0	0/1:89:47,42:47:1644:42:1375:-97.2409,0,-121.453	0/1:157:94,63:94:3359:63:2213:-152.172,0,-255.265	1/1:87:0,87:0:0:87:3065:-276.078,-26.1896,0	1/1:142:0,142:0:0:142:4891:-440.356,-42.7463,0
chr11	17350074	.	G	A	99839	PASS	AB=0.513369;ABP=15.2031;AC=41;AF=0.218085;AN=188;AO=4325;CIGAR=1X;DP=17208;DPB=17208;DPRA=1.23496;EPP=9368.59;EPPR=27958.5;GTI=2;LEN=1;MEANALT=1.08163;MQM=59.9824;MQMR=59.9894;NS=94;NUMALT=1;ODDS=0.960031;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=153781;QR=457706;RO=12874;RPL=2188;RPP=4.3162;RPPR=171.681;RPR=2137;RUN=1;SAF=2189;SAP=4.42063;SAR=2136;SRF=6937;SRP=171.681;SRR=5937;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:104:104,0:104:3695:0:0:0,-31.3071,-332.667	0/1:290:149,141:149:5292:141:4985:-361.502,0,-389.122	0/0:157:157,0:157:5591:0:0:0,-47.2617,-503.316	0/1:346:155,191:155:5491:191:6812:-508.996,0,-390.164	0/0:133:133,0:133:4738:0:0:0,-40.037,-426.58	0/0:56:56,0:56:1978:0:0:0,-16.8577,-178.293	0/0:183:183,0:183:6517:0:0:0,-55.0885,-586.616	0/0:313:312,0:312:11108:0:0:0,-93.9214,-999.407	0/1:248:114,134:114:4068:134:4808:-358.219,0,-291.653	0/0:153:153,0:153:5441:0:0:0,-46.0576,-489.821	0/0:149:149,0:149:5275:0:0:0,-44.8535,-474.89	0/1:203:93,110:93:3327:110:3906:-290.611,0,-238.538	0/1:176:81,95:81:2884:95:3412:-254.312,0,-206.816	0/0:136:136,0:136:4836:0:0:0,-40.9401,-435.266	0/1:199:109,90:109:3880:90:3228:-230.837,0,-289.492	0/0:143:143,0:143:5099:0:0:0,-43.0473,-459.055	0/0:108:108,0:108:3840:0:0:0,-32.5112,-345.796	0/1:112:52,60:52:1856:60:2152:-160.232,0,-133.604	0/1:94:50,44:50:1792:44:1563:-112.664,0,-133.266	0/1:401:225,176:225:7997:176:6256:-442.292,0,-599.042	0/0:259:259,0:259:9172:0:0:0,-77.9668,-825.461	0/1:199:66,133:66:2338:133:4726:-365.594,0,-150.774	0/1:171:72,99:72:2571:99:3527:-266.164,0,-180.163	0/0:126:126,0:126:4485:0:0:0,-37.9298,-403.795	0/0:166:166,0:166:5928:0:0:0,-49.971,-533.629	0/1:450:218,232:218:7771:232:8211:-603.544,0,-563.959	0/0:366:366,0:366:13068:0:0:0,-110.177,-1175.93	0/0:84:84,0:84:2961:0:0:0,-25.2865,-266.724	0/0:349:348,0:348:12388:0:0:0,-104.758,-1114.5	0/1:230:124,106:124:4367:106:3745:-268.014,0,-323.968	0/0:241:241,0:241:8539:0:0:0,-72.5482,-768.513	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	0/0:57:57,0:57:2027:0:0:0,-17.1587,-182.702	0/0:28:28,0:28:985:0:0:0,-8.42884,-88.9615	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:526:266,260:266:9483:260:9258:-674.794,0,-695.093	0/1:258:113,145:113:3999:145:5154:-386.338,0,-282.435	0/0:149:148,0:148:5262:0:0:0,-44.5524,-473.357	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:277:275,1:275:9758:1:32:0,-80.1999,-874.979	0/0:101:101,0:101:3587:0:0:0,-30.404,-323.039	0/0:320:320,0:320:11354:0:0:0,-96.3296,-1021.75	0/0:214:214,0:214:7648:0:0:0,-64.4204,-688.355	0/0:168:167,1:167:5938:1:36:0,-46.9748,-530.93	0/1:211:103,108:103:3684:108:3839:-282.191,0,-267.542	0/1:191:127,64:127:4497:64:2263:-146.435,0,-347.405	0/0:262:260,2:260:9258:2:72:0,-72.0331,-826.353	0/0:160:159,0:159:5641:0:0:0,-47.8638,-507.453	0/1:190:100,90:100:3553:90:3190:-230.124,0,-262.781	0/0:238:237,1:237:8430:1:36:0,-68.0469,-755.108	1/1:305:23,282:23:805:282:9995:-826.728,-19.0466,0	0/0:205:203,1:203:7184:1:36:0,-58.1186,-643.076	0/0:114:114,0:114:4076:0:0:0,-34.3174,-367.027	0/1:30:15,15:15:536:15:532:-39.1822,0,-39.5439	0/1:238:102,136:102:3604:136:4837:-363.841,0,-252.923	0/1:79:32,47:32:1140:47:1684:-128.066,0,-79.1278	0/1:21:16,5:16:576:5:180:-10.2304,0,-45.8534	0/0:28:27,1:27:968:1:36:0,-4.83056,-83.8391	0/0:148:148,0:148:5270:0:0:0,-44.5524,-474.438	0/1:213:115,98:115:4103:98:3491:-250.282,0,-305.337	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:298:123,175:123:4387:175:6224:-470.552,0,-305.297	0/0:379:379,0:379:13471:0:0:0,-114.09,-1212.19	0/1:137:67,70:67:2371:70:2508:-184.731,0,-172.407	0/0:136:136,0:136:4808:0:0:0,-40.9401,-432.877	0/1:382:177,204:177:6301:204:7267:-539.049,0,-452.153	0/0:156:156,0:156:5584:0:0:0,-46.9607,-502.683	0/1:69:24,45:24:848:45:1584:-122.077,0,-55.8686	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.224	0/0:125:125,0:125:4434:0:0:0,-37.6287,-399.227	0/1:45:13,32:13:451:32:1148:-90.0835,0,-27.3735	0/0:214:213,1:213:7570:1:36:0,-60.8221,-677.745	0/0:119:117,2:117:4175:2:72:0,-28.9858,-369.096	0/0:235:235,0:235:8336:0:0:0,-70.742,-750.253	0/1:221:118,103:118:4206:103:3663:-263.347,0,-312.194	0/0:220:220,0:220:7749:0:0:0,-66.2266,-697.447	0/1:196:117,79:117:4135:79:2828:-195.757,0,-313.334	0/1:29:17,12:17:612:12:423:-29.6752,0,-46.6836	0/1:218:102,116:102:3644:116:4080:-301.764,0,-262.541	0/0:199:197,1:197:7023:1:36:0,-56.3356,-628.567	0/0:359:358,0:358:12758:0:0:0,-107.769,-1147.83	0/1:169:85,84:85:3030:84:2966:-216.298,0,-222.056	0/0:153:153,0:153:5430:0:0:0,-46.0576,-488.834	0/0:187:187,0:187:6651:0:0:0,-56.2926,-598.673	0/1:349:180,169:180:6376:169:6013:-436.131,0,-468.874	0/0:99:99,0:99:3505:0:0:0,-29.802,-315.662	0/1:219:107,112:107:3798:112:3972:-291.746,0,-276.094	0/0:153:153,0:153:5417:0:0:0,-46.0576,-487.665	0/0:86:86,0:86:3036:0:0:0,-25.8886,-273.471	0/1:166:86,80:86:3042:80:2860:-207.667,0,-224.04	0/1:261:100,161:100:3579:161:5707:-435.18,0,-243.748	0/0:144:144,0:144:5134:0:0:0,-43.3483,-462.203	0/0:262:262,0:262:9341:0:0:0,-78.8699,-840.656
chr11	17350085	.	A	G	163551	PASS	AB=0.494756;ABP=4.08077;AC=146;AF=0.776596;AN=188;AO=6819;CIGAR=1X;DP=9381;DPB=9381;DPRA=0;EPP=14801.6;EPPR=5544.61;GTI=3;LEN=1;MEANALT=1.06383;MQM=59.9903;MQMR=59.9757;NS=94;NUMALT=1;ODDS=2.63113;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240908;QR=90766;RO=2556;RPL=902;RPP=8011.96;RPPR=2676.64;RPR=5917;RUN=1;SAF=901;SAP=8018.35;SAR=5918;SRF=390;SRP=2682.67;SRR=2166;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:207:91,116:91:3237:116:4073:-304.441,0,-229.238	1/1:70:0,70:0:0:70:2485:-223.902,-21.0721,0	0/1:165:103,62:103:3642:62:2197:-148.324,0,-278.315	1/1:37:0,37:0:0:37:1283:-115.767,-11.1381,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:74:0,74:0:0:74:2622:-236.228,-22.2762,0	1/1:135:0,135:0:0:135:4736:-426.402,-40.6391,0	0/1:46:15,31:15:540:31:1090:-84.5605,0,-35.0892	1/1:67:0,67:0:0:67:2356:-212.295,-20.169,0	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	0/1:79:43,36:43:1523:36:1279:-91.6311,0,-113.545	0/1:77:45,32:45:1594:32:1113:-77.2955,0,-120.569	1/1:72:0,72:0:0:72:2484:-223.813,-21.6742,0	0/1:115:53,62:53:1863:62:2195:-163.197,0,-133.327	1/1:81:0,81:0:0:81:2873:-258.807,-24.3834,0	1/1:80:0,80:0:0:80:2824:-254.399,-24.0824,0	0/1:74:38,36:38:1359:36:1270:-92.3251,0,-100.334	0/1:58:30,28:30:1063:28:972:-70.3294,0,-78.5211	0/1:110:49,60:49:1756:60:2135:-159.246,0,-125.152	1/1:100:0,100:0:0:100:3523:-317.28,-30.103,0	0/1:188:120,68:120:4239:68:2424:-161.823,0,-325.101	0/1:23:12,11:12:424:11:391:-28.6058,0,-31.5727	1/1:52:0,52:0:0:52:1833:-165.247,-15.6536,0	1/1:60:0,60:0:0:60:2135:-192.418,-18.0618,0	0/1:424:212,212:212:7532:212:7548:-551.727,0,-550.237	1/1:136:0,136:0:0:136:4842:-435.933,-40.9401,0	1/1:48:0,48:0:0:48:1690:-152.384,-14.4494,0	1/1:336:0,336:0:0:336:11898:-1070.69,-101.146,0	0/1:133:60,73:60:2139:73:2572:-191.69,0,-152.74	1/1:158:0,158:0:0:158:5501:-495.221,-47.5627,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:10:1,9:1:36:9:316:-25.7686,0,-0.587975	1/1:19:0,19:0:0:19:667:-60.3546,-5.71957,0	0/1:500:236,264:236:8368:264:9373:-693.028,0,-602.564	0/1:105:60,45:60:2156:45:1593:-112.05,0,-162.699	1/1:92:0,92:0:0:92:3236:-291.464,-27.6948,0	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	1/1:135:1,134:1:36:134:4748:-423.881,-37.0408,0	1/1:51:0,51:0:0:51:1786:-161.021,-15.3525,0	1/1:139:0,138:0:0:138:4871:-438.186,-41.5421,0	1/1:107:0,106:0:0:106:3763:-338.512,-31.9092,0	1/1:89:0,89:0:0:89:3112:-280.308,-26.7917,0	0/1:189:91,98:91:3211:98:3491:-257.075,0,-232.321	0/1:110:35,75:35:1239:75:2651:-205.722,0,-78.7004	1/1:131:2,128:2:72:128:4548:-402.651,-32.657,0	1/1:73:0,73:0:0:73:2561:-230.738,-21.9752,0	0/1:114:53,61:53:1891:61:2135:-158.098,0,-136.15	1/1:240:1,239:1:21:239:8501:-762.993,-70.1473,0	0/0:299:285,13:285:10172:13:453:0,-48.9663,-874.311	1/1:102:1,101:1:36:101:3586:-319.347,-27.1068,0	1/1:116:0,116:0:0:116:4127:-371.616,-34.9195,0	0/1:19:8,11:8:284:11:387:-29.4464,0,-20.1838	0/1:115:58,57:58:2073:57:2017:-147.183,0,-152.22	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/1:21:5,16:5:176:16:564:-44.7687,0,-9.86339	1/1:32:1,31:1:36:31:1084:-94.2632,-6.03469,0	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	0/1:104:51,53:51:1816:53:1855:-135.922,0,-132.414	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:291:169,122:169:5987:122:4353:-304.345,0,-451.341	1/1:214:0,214:0:0:214:7572:-681.524,-64.4204,0	0/1:75:47,28:47:1655:28:976:-65.5724,0,-126.612	1/1:55:0,55:0:0:55:1947:-175.505,-16.5567,0	0/1:141:62,79:62:2195:79:2767:-206.824,0,-155.368	1/1:46:0,46:0:0:46:1598:-144.105,-13.8474,0	0/1:37:19,18:19:662:18:640:-46.7912,0,-48.7643	1/1:26:0,26:0:0:26:916:-82.7546,-7.82678,0	1/1:122:0,122:0:0:122:4315:-388.529,-36.7257,0	0/1:23:15,8:15:527:8:288:-19.3437,0,-40.8365	1/1:68:0,68:0:0:68:2391:-215.446,-20.47,0	1/1:40:2,38:2:68:38:1334:-113.898,-5.58349,0	1/1:94:0,94:0:0:94:3352:-301.898,-28.2968,0	0/1:113:50,62:50:1784:62:2185:-162.84,0,-126.768	1/1:91:0,91:0:0:91:3189:-287.233,-27.3937,0	0/1:84:46,38:46:1648:38:1334:-95.0693,0,-123.322	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:125:75,50:75:2656:50:1777:-122.582,0,-201.656	1/1:93:0,93:0:0:93:3305:-297.669,-27.9958,0	1/1:156:0,156:0:0:156:5494:-494.589,-46.9607,0	0/1:92:45,47:45:1584:47:1645:-120.639,0,-115.153	1/1:78:0,78:0:0:78:2733:-246.214,-23.4803,0	1/1:122:0,122:0:0:122:4340:-390.778,-36.7257,0	0/1:169:77,92:77:2742:92:3205:-237.8,0,-196.148	1/1:60:0,60:0:0:60:2113:-190.438,-18.0618,0	0/1:118:67,51:67:2387:51:1803:-127.03,0,-179.566	1/1:77:0,77:0:0:77:2715:-244.595,-23.1793,0	1/1:50:1,49:1:36:49:1731:-152.476,-11.4532,0	0/1:82:32,50:32:1144:50:1776:-135.439,0,-78.5851	0/1:101:65,36:65:2297:36:1262:-83.4769,0,-176.586	1/1:58:0,58:0:0:58:2063:-185.941,-17.4597,0	1/1:121:0,121:0:0:121:4239:-381.696,-36.4246,0
chr11	17443791	.	T	C	100374	PASS	AB=0.450408;ABP=65.9004;AC=147;AF=0.790323;AN=186;AO=4821;CIGAR=1X;DP=6452;DPB=6452;DPRA=11.6775;EPP=10454.3;EPPR=3540.34;GTI=5;LEN=1;MEANALT=1.02174;MQM=59.4848;MQMR=59.9724;NS=93;NUMALT=1;ODDS=0.575612;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170229;QR=57237;RO=1629;RPL=4;RPP=10437;RPPR=3540.34;RPR=4817;RUN=1;SAF=2;SAP=10454.3;SAR=4819;SRF=0;SRP=3540.34;SRR=1629;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1527:-137.708,-12.9443,0	0/1:44:28,16:28:974:16:567:-38.1154,0,-74.7254	1/1:97:0,97:0:0:97:3415:-307.514,-29.1999,0	0/1:134:72,62:72:2557:62:2196:-157.507,0,-190.041	1/1:43:0,43:0:0:43:1522:-137.118,-12.9443,0	1/1:38:0,38:0:0:38:1330:-119.992,-11.4391,0	1/1:75:0,75:0:0:75:2620:-235.992,-22.5773,0	1/1:94:0,94:0:0:94:3343:-301.048,-28.2968,0	0/1:72:45,27:45:1568:27:936:-62.8649,0,-119.734	1/1:54:0,54:0:0:54:1922:-173.216,-16.2556,0	1/1:44:0,44:0:0:44:1526:-137.625,-13.2453,0	0/1:94:41,53:41:1440:53:1879:-141.08,0,-101.599	0/1:70:39,31:39:1348:31:1097:-77.9652,0,-100.543	1/1:79:0,79:0:0:79:2785:-250.87,-23.7814,0	0/1:60:30,30:30:1054:30:1044:-76.2029,0,-77.1074	1/1:54:0,54:0:0:54:1914:-172.499,-16.2556,0	1/1:51:0,51:0:0:51:1786:-161.008,-15.3525,0	0/1:23:7,16:7:248:16:559:-43.7139,0,-15.7405	0/1:26:16,10:16:558:10:352:-24.1914,0,-42.7197	0/1:103:69,34:69:2426:34:1202:-77.4526,0,-187.588	1/1:76:0,76:0:0:76:2667:-240.262,-22.8783,0	0/1:113:84,29:84:2952:29:988:-55.1436,0,-231.899	0/1:113:62,51:62:2153:51:1819:-129.941,0,-160.018	1/1:63:0,63:0:0:63:2242:-201.992,-18.9649,0	1/1:51:0,51:0:0:51:1805:-162.666,-15.3525,0	0/1:147:77,70:77:2714:70:2443:-175.862,0,-199.883	1/1:134:0,134:0:0:134:4753:-427.686,-40.338,0	1/1:27:0,27:0:0:27:930:-84.0082,-8.12781,0	1/1:162:0,162:0:0:162:5691:-511.956,-48.7669,0	0/1:102:38,64:38:1340:64:2258:-172.744,0,-90.195	1/1:100:0,100:0:0:100:3558:-320.311,-30.103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:12:0,12:0:0:12:419:-38.0427,-3.61236,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:163:96,67:96:3352:67:2356:-163.228,0,-252.831	0/1:120:62,58:62:2177:58:2051:-148.68,0,-160.06	1/1:31:0,31:0:0:31:1103:-99.5716,-9.33193,0	.:.:.:.:.:.:.:.	1/1:79:0,79:0:0:79:2824:-254.364,-23.7814,0	1/1:21:0,21:0:0:21:735:-66.4668,-6.32163,0	1/1:103:0,103:0:0:103:3672:-330.669,-31.0061,0	1/1:51:0,51:0:0:51:1779:-160.002,-15.3525,0	1/1:54:0,54:0:0:54:1911:-171.607,-16.2556,0	0/1:84:46,38:46:1623:38:1327:-94.4351,0,-121.072	0/1:68:45,23:45:1603:23:815:-53.1826,0,-124.089	1/1:104:2,102:2:72:102:3627:-319.785,-24.4704,0	1/1:55:0,55:0:0:55:1950:-175.76,-16.5567,0	0/1:69:41,28:41:1459:28:976:-67.3786,0,-110.834	1/1:100:1,99:1:32:99:3540:-315.587,-26.9037,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	1/1:78:0,78:0:0:78:2759:-248.515,-23.4803,0	1/1:62:0,61:0:0:61:2160:-194.273,-18.3628,0	0/1:13:8,5:8:279:5:176:-12.2633,0,-21.5341	0/1:118:67,51:67:2375:51:1811:-127.728,0,-178.487	0/1:45:27,18:27:964:18:648:-45.1055,0,-73.5305	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:140:-12.9433,-1.20412,0	1/1:73:0,73:0:0:73:2611:-235.191,-21.9752,0	0/1:115:52,63:52:1844:63:2239:-167.148,0,-131.622	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:121:79,42:79:2757:42:1476:-96.7071,0,-211.95	1/1:112:2,110:2:63:110:3865:-342.051,-27.7322,0	0/1:66:31,35:31:1100:35:1243:-92.2935,0,-79.4423	1/1:44:0,44:0:0:44:1551:-139.843,-13.2453,0	0/1:132:85,47:85:3010:47:1667:-110.581,0,-231.396	1/1:77:1,76:1:36:76:2686:-238.368,-19.581,0	0/1:37:22,15:22:744:15:531:-36.9792,0,-56.1343	1/1:51:0,51:0:0:51:1793:-161.562,-15.3525,0	1/1:32:0,32:0:0:32:1135:-102.457,-9.63296,0	0/1:17:6,11:6:203:11:381:-29.5008,0,-13.4837	1/1:83:0,83:0:0:83:2861:-257.64,-24.9855,0	1/1:62:0,62:0:0:62:2185:-196.141,-18.6639,0	1/1:144:0,144:0:0:144:5090:-458.103,-43.3483,0	0/1:114:60,54:60:2123:54:1931:-139.734,0,-157.021	1/1:127:0,127:0:0:127:4496:-404.69,-38.2308,0	0/1:82:40,42:40:1414:42:1460:-106.998,0,-102.871	0/1:21:7,14:7:248:14:476:-36.8391,0,-16.3426	0/1:68:40,28:40:1424:28:1004:-69.4591,0,-107.987	1/1:113:0,113:0:0:113:3998:-359.903,-34.0164,0	1/1:103:0,103:0:0:103:3664:-329.949,-31.0061,0	0/1:48:21,26:21:723:26:919:-68.6425,0,-51.024	1/1:73:0,73:0:0:73:2595:-233.79,-21.9752,0	1/1:45:0,45:0:0:45:1588:-143.167,-13.5464,0	0/1:108:55,53:55:1916:53:1870:-136.028,0,-140.207	1/1:19:0,19:0:0:19:660:-59.7124,-5.71957,0	0/1:59:23,36:23:797:36:1253:-95.2894,0,-54.2851	1/1:67:0,67:0:0:67:2371:-213.598,-20.169,0	1/1:29:0,29:0:0:29:1008:-91.0216,-8.72987,0	0/1:107:57,50:57:2003:50:1752:-125.741,0,-148.329	0/1:58:35,23:35:1208:23:803:-55.1217,0,-91.5603	1/1:89:0,89:0:0:89:3170:-285.328,-26.7917,0	1/1:85:0,85:0:0:85:2978:-268.019,-25.5876,0
chr11	17642506	.	GCACT	ACACT,ACACA	398550	PASS	AB=0.502657,0.494217;ABP=3.40264,4.86885;AC=147,39;AF=0.790323,0.209677;AN=186;AO=11324,3179;CIGAR=1X4M,1X3M1X;DP=14567;DPB=14568;DPRA=0,1.20597;EPP=24584.1,6906.12;EPPR=22.5536;GTI=0;LEN=1,5;MEANALT=2.09677,2.47059;MQM=59.9845,59.9591;MQMR=60;NS=93;NUMALT=2;ODDS=1.95156;PAIRED=0,0;PAIREDR=0;PAO=2,3;PQA=72,108;PQR=0;PRO=0;QA=403254,111613;QR=320;RO=9;RPL=5131,1414;RPP=219.284,87.1649;RPPR=14.8328;RPR=6193,1765;RUN=1,1;SAF=5132,1414;SAP=218.47,87.1649;SAR=6192,1765;SRF=8;SRP=14.8328;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:107:0,106,0:0:0:106,0:3804,0:-342.276,-31.9092,0,-342.276,-31.9092,-342.276	1/2:223:0,120,103:0:0:120,103:4270,3628:-643.669,-295.667,-259.543,-348.356,0,-317.35	1/1:280:0,278,1:0:0:278,1:9943,24:-894.48,-83.6863,0,-892.622,-81.9175,-892.321	1/2:328:0,153,173:0:0:153,173:5459,6117:-943.222,-498.195,-452.137,-445.022,0,-392.944	1/1:98:0,97,0:0:0:97,0:3441,0:-309.692,-29.1999,0,-309.692,-29.1999,-309.692	1/1:90:0,89,0:0:0:89,0:3172,0:-285.454,-26.7917,0,-285.454,-26.7917,-285.454	1/1:218:0,216,0:0:0:216,0:7680,0:-690.887,-65.0225,0,-690.887,-65.0225,-690.887	1/1:217:0,217,0:0:0:217,0:7738,0:-696.455,-65.3235,0,-696.455,-65.3235,-696.455	1/2:144:0,76,67:0:0:76,67:2712,2348:-412.185,-191.1,-168.221,-221.127,0,-200.958	1/1:231:0,230,0:0:0:230,0:8211,0:-738.722,-69.2369,0,-738.722,-69.2369,-738.722	1/1:87:0,86,0:0:0:86,0:3068,0:-275.99,-25.8886,0,-275.99,-25.8886,-275.99	1/2:167:0,81,86:0:0:81,86:2888,3012:-480.844,-245.424,-221.041,-235.774,0,-209.885	1/2:134:0,63,70:0:0:63,70:2240,2481:-384.657,-202.113,-183.148,-182.539,0,-161.467	1/1:139:0,139,0:0:0:139,0:4949,0:-445.561,-41.8432,0,-445.561,-41.8432,-445.561	1/2:127:1,59,66:1:36:59,66:2104,2312:-356.389,-185.175,-170.352,-168.572,0,-151.641	1/1:91:0,91,0:0:0:91,0:3223,0:-290.294,-27.3937,0,-290.294,-27.3937,-290.294	1/1:120:0,116,0:0:0:116,0:4116,0:-370.341,-34.9195,0,-370.341,-34.9195,-370.341	1/2:91:0,40,51:0:0:40,51:1413,1755:-257.954,-142.879,-130.838,-115.424,0,-100.072	1/2:92:0,47,45:0:0:47,45:1625,1582:-261.16,-129.124,-114.975,-132.385,0,-118.839	1/2:289:0,145,144:0:0:145,144:5160,5065:-833.108,-412.655,-369.005,-420.807,0,-377.459	1/1:278:2,275,1:2:72:275,1:9745,36:-869.98,-76.9084,0,-867.645,-79.8458,-873.219	1/2:133:0,45,87:0:0:45,87:1581,3057:-377.494,-248.813,-235.267,-128.672,0,-102.483	1/2:163:0,102,60:0:0:102,60:3622,2078:-464.001,-168.869,-138.164,-295.122,0,-277.06	1/1:150:0,147,0:0:0:147,0:5267,0:-473.857,-44.2514,0,-473.857,-44.2514,-473.857	1/1:135:0,134,1:0:0:134,1:4792,31:-431.127,-40.338,0,-428.638,-37.5396,-428.337	1/2:409:0,218,189:0:0:218,189:7749,6625:-1170.64,-539.174,-473.549,-631.547,0,-574.652	1/1:403:3,400,0:3:104:400,0:14295,0:-1276.59,-111.652,0,-1277.49,-120.412,-1285.94	1/1:68:0,67,1:0:0:67,1:2370,29:-213.268,-20.169,0,-210.96,-17.5704,-210.659	1/1:348:0,347,0:0:0:347,0:12370,0:-1112.73,-104.457,0,-1112.73,-104.457,-1112.73	1/2:198:0,96,102:0:0:96,102:3422,3592:-571.726,-292.785,-263.886,-279.295,0,-248.59	1/1:177:0,177,0:0:0:177,0:6284,0:-565.658,-53.2823,0,-565.658,-53.2823,-565.658	1/2:10:0,5,5:0:0:5,5:180,178:-29.5526,-14.8636,-13.3584,-15.0469,0,-13.5418	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:22:0,20,0:0:0:20,0:720,0:-64.778,-6.0206,0,-64.778,-6.0206,-64.778	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:344:0,175,168:0:0:175,168:6226,5917:-989.119,-481.716,-429.036,-507.397,0,-456.824	1/2:179:0,91,86:0:0:91,86:3252,3044:-513.131,-247.978,-220.584,-265.182,0,-239.294	1/1:121:0,120,0:0:0:120,0:4259,0:-383.211,-36.1236,0,-383.211,-36.1236,-383.211	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:226:0,225,0:0:0:225,0:8018,0:-721.282,-67.7318,0,-721.282,-67.7318,-721.282	1/1:61:0,61,0:0:0:61,0:2175,0:-195.826,-18.3628,0,-195.826,-18.3628,-195.826	1/1:229:0,229,0:0:0:229,0:8145,0:-733.068,-68.9359,0,-733.068,-68.9359,-733.068	1/1:143:1,142,0:1:36:142,0:5020,0:-448.35,-39.449,0,-448.651,-42.7463,-451.589	1/1:108:0,107,0:0:0:107,0:3798,0:-341.679,-32.2102,0,-341.679,-32.2102,-341.679	1/2:133:0,58,75:0:0:58,75:2072,2649:-385.016,-216.081,-198.621,-169.29,0,-146.713	1/2:199:0,124,75:0:0:124,75:4447,2636:-577.628,-214.91,-177.582,-363.072,0,-340.495	1/1:251:0,251,0:0:0:251,0:8976,0:-807.822,-75.5585,0,-807.822,-75.5585,-807.822	1/1:176:0,176,0:0:0:176,0:6232,0:-560.979,-52.9813,0,-560.979,-52.9813,-560.979	1/2:204:0,114,90:0:0:114,90:4051,3176:-589.061,-258.955,-224.638,-330.46,0,-303.367	1/1:130:0,130,0:0:0:130,0:4636,0:-417.404,-39.1339,0,-417.404,-39.1339,-417.404	1/2:9:0,5,4:0:0:5,4:176,138:-25.8876,-11.5557,-10.0505,-14.6799,0,-13.4757	1/1:210:0,206,3:0:0:206,3:7353,102:-661.502,-62.0122,0,-653.228,-53.6714,-652.325	1/1:89:0,87,1:0:0:87,1:3093,36:-278.301,-26.1896,0,-275.364,-23.1873,-275.063	1/2:16:0,6,10:0:0:6,10:212,353:-46.3643,-29.0987,-27.2925,-17.6186,0,-14.6083	1/2:256:0,141,115:0:0:141,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chr11	17739172	.	G	T	85780	PASS	AB=0.55498;ABP=195.703;AC=39;AF=0.207447;AN=188;AO=4104;CIGAR=1X;DP=15458;DPB=15458;DPRA=1.46252;EPP=8914.73;EPPR=24653.6;GTI=6;LEN=1;MEANALT=1.03704;MQM=37.7922;MQMR=50.8099;NS=94;NUMALT=1;ODDS=0.940757;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146242;QR=402169;RO=11352;RPL=2263;RPP=97.2365;RPPR=93.5541;RPR=1841;RUN=1;SAF=2263;SAP=97.2365;SAR=1841;SRF=6020;SRP=93.5541;SRR=5332;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:66:66,0:66:2313:0:0:0,-19.868,-204.224	0/1:178:72,106:72:2584:106:3755:-261.835,0,-178.071	0/0:127:127,0:127:4467:0:0:0,-38.2308,-398.076	0/1:337:155,182:155:5512:182:6531:-436.742,0,-390.79	0/0:118:118,0:118:4167:0:0:0,-35.5215,-372.897	0/0:92:92,0:92:3271:0:0:0,-27.6948,-292.97	0/0:120:119,1:119:4223:1:36:0,-32.6209,-373.043	0/0:275:274,1:274:9688:1:36:0,-79.3956,-860.908	0/1:175:69,106:69:2442:106:3804:-261.167,0,-166.035	0/0:174:173,1:173:6178:1:36:0,-48.8765,-549.547	0/0:119:119,0:119:4232:0:0:0,-35.8226,-378.459	0/1:215:108,107:108:3817:107:3820:-250.95,0,-276.362	0/1:192:95,97:95:3358:97:3484:-229.942,0,-243.22	0/0:138:137,1:137:4844:1:36:0,-38.0876,-429.517	0/1:173:79,94:79:2801:94:3332:-222.654,0,-198.593	0/0:123:123,0:123:4396:0:0:0,-37.0267,-392.542	0/0:120:120,0:120:4252:0:0:0,-36.1236,-381.219	0/1:100:53,47:53:1861:47:1661:-106.141,0,-136.722	0/1:78:38,40:38:1348:40:1436:-96.5967,0,-97.6248	0/1:353:152,201:152:5405:201:7160:-497.519,0,-377.777	0/0:269:269,0:269:9523:0:0:0,-80.9771,-851.43	0/1:230:73,157:73:2570:157:5617:-400.592,0,-158.913	0/1:169:82,87:82:2924:87:3107:-206.83,0,-211.341	0/0:153:153,0:153:5416:0:0:0,-46.0576,-484.39	0/0:95:94,1:94:3323:1:36:0,-25.1434,-293.9	0/1:510:208,302:208:7383:302:10771:-754.7,0,-506.233	0/0:288:288,0:288:10239:0:0:0,-86.6966,-914.579	0/0:90:90,0:90:3194:0:0:0,-27.0927,-285.959	0/0:459:459,0:459:16287:0:0:0,-138.173,-1452.58	0/1:134:54,80:54:1910:80:2854:-200.279,0,-130.584	0/0:229:229,0:229:8109:0:0:0,-68.9359,-725.366	1/1:4:0,4:0:0:4:129:-11.1383,-1.20412,0	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.6543	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0401	0/0:12:12,0:12:424:0:0:0,-3.61236,-37.0828	0/0:22:22,0:22:769:0:0:0,-6.62266,-67.7783	0/1:456:218,237:218:7648:237:8409:-575.974,0,-547.148	0/1:214:70,144:70:2460:144:5130:-367.84,0,-155.655	0/0:147:147,0:147:5195:0:0:0,-44.2514,-465.17	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.7702	0/0:271:271,0:271:9645:0:0:0,-81.5791,-862.892	0/0:64:64,0:64:2250:0:0:0,-19.2659,-201.618	0/0:305:304,1:304:10755:1:36:0,-88.3597,-956.308	0/0:170:170,0:170:6010:0:0:0,-51.1751,-536.168	0/0:175:175,0:175:6183:0:0:0,-52.6802,-552.155	0/1:112:37,75:37:1317:75:2656:-184.201,0,-82.73	0/1:272:121,151:121:4300:151:5383:-360.296,0,-302.606	0/0:156:156,0:156:5517:0:0:0,-46.9607,-493.446	0/0:135:135,0:135:4798:0:0:0,-40.639,-429.65	0/1:274:127,147:127:4501:147:5246:-358.753,0,-320.053	0/0:210:210,0:210:7486:0:0:0,-63.2163,-668.212	0/1:17:14,3:14:500:3:108:-3.80784,0,-39.9407	0/0:163:161,2:161:5692:2:72:0,-42.7658,-503.198	0/0:51:51,0:51:1800:0:0:0,-15.3525,-160.773	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/1:278:131,147:131:4626:147:5259:-354.31,0,-329.32	0/1:88:34,54:34:1220:54:1920:-129.386,0,-82.6305	0/1:18:12,6:12:432:6:216:-12.1134,0,-33.515	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.0312	0/0:107:107,0:107:3771:0:0:0,-32.2102,-338.281	0/1:200:101,99:101:3587:99:3517:-234.716,0,-260.376	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.5073	0/1:370:156,214:156:5561:214:7595:-537.347,0,-387.482	0/0:303:301,2:301:10711:2:72:0,-85.1556,-953.373	0/1:96:51,45:51:1819:45:1598:-105.893,0,-134.267	0/0:154:154,0:154:5453:0:0:0,-46.3586,-486.618	0/1:260:116,144:116:4091:144:5156:-354.676,0,-287.489	0/0:185:179,6:179:6316:6:216:0,-38.9916,-547.678	0/1:98:51,47:51:1804:47:1680:-108.34,0,-132.15	0/0:114:113,1:113:3994:1:36:0,-31.1938,-354.661	0/0:124:123,1:123:4370:1:36:0,-33.7916,-387.952	0/1:18:11,7:11:392:7:248:-15.0875,0,-30.0613	0/0:124:123,1:123:4344:1:36:0,-34.0287,-384.237	0/0:94:94,0:94:3351:0:0:0,-28.2968,-299.931	0/0:208:208,0:208:7349:0:0:0,-62.6142,-655.359	0/1:228:94,134:94:3351:134:4775:-328.389,0,-230.979	0/0:158:156,2:156:5505:2:72:0,-41.395,-484.769	0/1:220:93,127:93:3292:127:4504:-307.879,0,-228.905	0/1:11:9,2:9:320:2:68:-2.09464,0,-25.6912	0/1:177:85,91:85:3032:91:3244:-221.235,0,-218.227	0/0:160:160,0:160:5576:0:0:0,-48.1648,-498.55	0/0:276:275,1:275:9790:1:36:0,-79.6967,-871.281	0/1:210:105,105:105:3717:105:3719:-249.385,0,-269.979	0/0:169:169,0:169:5972:0:0:0,-50.8741,-533.433	0/0:180:179,1:179:6365:1:36:0,-50.9978,-567.63	0/1:328:167,161:167:5892:161:5740:-381.886,0,-427.222	0/0:78:78,0:78:2763:0:0:0,-23.4803,-247.229	0/1:158:66,92:66:2345:92:3270:-224.089,0,-160.915	0/0:161:161,0:161:5712:0:0:0,-48.4658,-510.444	0/0:80:80,0:80:2822:0:0:0,-24.0824,-252.503	0/1:179:84,95:84:2975:95:3361:-223.431,0,-212.145	0/1:213:73,140:73:2583:140:5007:-352.82,0,-167.172	0/0:184:180,4:180:6402:4:144:0,-43.5953,-558.212	0/0:266:266,0:266:9345:0:0:0,-80.074,-835.584
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chr11	18235093	.	G	T	80584.9	PASS	AB=0.509827;ABP=8.81428;AC=41;AF=0.218085;AN=188;AO=3543;CIGAR=1X;DP=15958;DPB=15958;DPRA=1.10713;EPP=7696.54;EPPR=26938;GTI=1;LEN=1;MEANALT=1.08;MQM=60;MQMR=59.9997;NS=94;NUMALT=1;ODDS=0.96859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126381;QR=442353;RO=12408;RPL=1395;RPP=350.525;RPPR=727.037;RPR=2148;RUN=1;SAF=1395;SAP=350.525;SAR=2148;SRF=5186;SRP=728.461;SRR=7222;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:106:106,0:106:3757:0:0:0,-31.9092,-338.331	0/1:181:100,81:100:3559:81:2904:-207.109,0,-266.033	0/0:218:216,1:216:7732:1:36:0,-62.0851,-692.314	0/1:280:122,158:122:4371:158:5667:-425.86,0,-309.274	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/0:147:147,0:147:5250:0:0:0,-44.2514,-472.637	0/0:335:335,0:335:11979:0:0:0,-100.845,-1077.96	0/1:181:98,83:98:3462:83:2946:-210.886,0,-257.306	0/0:157:157,0:157:5622:0:0:0,-47.2617,-506.1	0/0:175:175,0:175:6247:0:0:0,-52.6802,-562.324	0/1:205:101,104:101:3574:104:3703:-271.76,0,-260.156	0/1:167:98,69:98:3495:69:2484:-173.541,0,-264.489	0/0:275:275,0:275:9809:0:0:0,-82.7832,-882.756	0/1:190:92,98:92:3288:98:3508:-258.735,0,-238.944	0/0:159:159,0:159:5663:0:0:0,-47.8638,-509.79	0/0:181:181,0:181:6476:0:0:0,-54.4864,-582.923	0/1:124:63,61:63:2251:61:2173:-158.507,0,-165.525	0/1:110:44,66:44:1572:66:2360:-179.545,0,-108.658	0/1:217:101,116:101:3575:116:4156:-308.899,0,-256.632	0/0:360:359,0:359:12782:0:0:0,-108.07,-1149.84	0/1:106:31,75:31:1103:75:2688:-210.255,0,-67.6706	0/1:163:84,79:84:3007:79:2814:-204.432,0,-221.793	0/0:111:111,0:111:3967:0:0:0,-33.4143,-357.221	0/0:80:80,0:80:2842:0:0:0,-24.0824,-256.018	0/1:411:167,244:167:5937:244:8722:-661.246,0,-410.716	0/0:426:426,0:426:15208:0:0:0,-128.239,-1368.44	0/0:93:93,0:93:3315:0:0:0,-27.9958,-298.569	0/0:230:230,0:230:8249:0:0:0,-69.2369,-742.417	0/1:139:64,74:64:2287:74:2601:-192.473,0,-164.228	0/0:316:314,2:314:11213:2:57:0,-89.7122,-1003.64	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/1:489:253,236:253:9022:236:8414:-610.061,0,-664.755	0/1:133:62,71:62:2211:71:2518:-186.832,0,-159.217	0/0:147:147,0:147:5204:0:0:0,-44.2514,-468.501	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:166:166,0:166:5922:0:0:0,-49.971,-533.09	0/0:85:85,0:85:2987:0:0:0,-25.5875,-269.06	0/0:141:141,0:141:5019:0:0:0,-42.4452,-451.857	0/0:170:170,0:170:6047:0:0:0,-51.1751,-544.335	0/0:155:154,1:154:5445:1:36:0,-43.0614,-486.582	0/1:98:59,39:59:2111:39:1385:-95.4459,0,-160.757	0/1:204:106,98:106:3750:98:3472:-251.28,0,-276.29	0/0:160:159,1:159:5672:1:36:0,-44.5665,-507.001	0/0:128:128,0:128:4559:0:0:0,-38.5318,-410.475	0/1:215:107,108:107:3829:108:3865:-283.322,0,-280.083	0/0:188:188,0:188:6732:0:0:0,-56.5936,-605.952	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:210:210,0:210:7477:0:0:0,-63.2163,-672.972	0/0:120:119,1:119:4239:1:36:0,-32.5253,-378.09	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:222:125,97:125:4450:97:3453:-244.153,0,-333.843	0/1:35:14,21:14:495:21:756:-57.8312,0,-34.347	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:186:186,0:186:6602:0:0:0,-55.9916,-594.261	0/1:296:146,150:146:5207:150:5332:-390.906,0,-379.666	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:306:155,150:155:5531:150:5362:-390.536,0,-405.74	0/0:254:252,2:252:9024:2:72:0,-69.6249,-805.298	0/1:177:98,79:98:3493:79:2813:-200.126,0,-261.298	0/0:115:114,1:114:4092:1:36:0,-31.0202,-364.866	0/1:215:118,97:118:4206:97:3480:-248.689,0,-314	0/0:264:264,0:264:9402:0:0:0,-79.4719,-846.14	0/1:117:61,56:61:2176:56:1988:-143.974,0,-160.886	0/0:121:121,0:121:4335:0:0:0,-36.4246,-390.324	0/0:217:217,0:217:7702:0:0:0,-65.3235,-693.219	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:131:129,1:129:4598:1:36:0,-35.8955,-410.387	0/0:149:149,0:149:5308:0:0:0,-44.8535,-477.855	0/0:401:401,0:401:14330:0:0:0,-120.713,-1289.46	0/1:259:121,138:121:4348:138:4912:-364.262,0,-313.526	0/0:159:158,1:158:5605:1:36:0,-44.2655,-500.975	0/1:327:158,169:158:5641:169:6053:-446.433,0,-409.374	0/1:18:4,14:4:144:14:504:-40.2796,0,-7.89508	0/1:220:99,121:99:3543:121:4309:-321.758,0,-252.852	0/0:175:175,0:175:6258:0:0:0,-52.6802,-563.314	0/0:341:339,2:339:12104:2:72:0,-95.8145,-1082.37	0/1:168:89,79:89:3159:79:2825:-203.914,0,-233.961	0/0:197:197,0:197:6959:0:0:0,-59.3029,-626.382	0/0:155:155,0:155:5535:0:0:0,-46.6596,-498.276	0/1:352:174,178:174:6210:178:6332:-464.009,0,-453.035	0/0:73:72,0:72:2543:0:0:0,-21.6742,-228.762	0/1:152:86,66:86:3063:66:2355:-166.452,0,-230.143	0/0:205:204,0:204:7238:0:0:0,-61.4101,-651.119	0/0:139:139,0:139:4970:0:0:0,-41.8432,-447.448	0/1:212:112,100:112:3980:100:3572:-257.869,0,-294.575	0/1:187:56,131:56:1980:131:4638:-361.291,0,-122.18	0/0:223:223,0:223:7937:0:0:0,-67.1297,-714.356	0/0:258:258,0:258:9209:0:0:0,-77.6657,-828.782
chr11	18235315	.	C	T	41467.1	PASS	AB=0.4958;ABP=3.7764;AC=39;AF=0.209677;AN=186;AO=2504;CIGAR=1X;DP=10937;DPB=10937;DPRA=1.36561;EPP=5440.38;EPPR=18282.5;GTI=3;LEN=1;MEANALT=1.14583;MQM=59.9868;MQMR=59.9955;NS=93;NUMALT=1;ODDS=0.579263;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89111;QR=300500;RO=8422;RPL=2504;RPP=5440.38;RPPR=18282.5;RPR=0;RUN=1;SAF=0;SAP=5440.38;SAR=2504;SRF=0;SRP=18291.2;SRR=8422;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/1:147:68,79:68:2406:79:2787:-206.816,0,-172.542	0/0:160:160,0:160:5728:0:0:0,-48.1648,-515.637	0/1:330:167,162:167:5966:162:5771:-420.104,0,-437.646	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:159:157,1:157:5624:1:36:0,-44.2494,-502.754	0/0:202:202,0:202:7180:0:0:0,-60.8081,-646.255	0/1:125:71,54:71:2518:54:1921:-135.536,0,-189.24	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.882	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:98:44,54:44:1580:54:1932:-144.655,0,-112.991	0/1:89:51,38:51:1824:38:1323:-92.5718,0,-137.649	0/0:86:85,0:85:3026:0:0:0,-25.5875,-272.208	0/1:67:32,35:32:1152:35:1260:-93.5365,0,-83.8211	0/0:80:80,0:80:2860:0:0:0,-24.0824,-257.638	0/0:93:93,0:93:3323:0:0:0,-27.9958,-299.288	0/1:49:22,27:22:773:27:972:-73.0474,0,-55.139	0/1:33:14,19:14:504:19:669:-50.6,0,-35.7641	0/1:262:132,129:132:4725:129:4587:-334.064,0,-346.479	0/0:177:177,0:177:6322:0:0:0,-53.2823,-569.07	0/1:95:24,71:24:860:71:2502:-196.832,0,-49.124	0/1:94:55,39:55:1965:39:1396:-97.6423,0,-148.826	0/0:139:139,0:139:4977:0:0:0,-41.8432,-448.076	0/0:87:87,0:87:3074:0:0:0,-26.1896,-276.888	0/1:458:237,221:237:8470:221:7830:-566.856,0,-624.428	0/0:211:211,0:211:7514:0:0:0,-63.5173,-676.301	0/0:44:43,1:43:1544:1:36:0,-9.64704,-135.655	0/0:357:356,0:356:12733:0:0:0,-107.167,-1145.43	0/1:138:51,87:51:1790:87:3090:-236.784,0,-119.836	0/0:174:174,0:174:6214:0:0:0,-52.3792,-559.354	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:268:153,115:153:5453:115:4128:-291.027,0,-410.224	0/1:195:87,108:87:3112:108:3857:-288.624,0,-221.606	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.717	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:144:144,0:144:5119:0:0:0,-43.3483,-460.851	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:143:142,0:142:5077:0:0:0,-42.7463,-456.713	0/0:134:134,0:134:4782:0:0:0,-40.338,-430.534	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/1:111:67,44:67:2385:44:1580:-109.077,0,-181.492	0/1:134:85,48:85:3020:48:1705:-113.337,0,-231.633	0/0:238:233,3:233:8266:3:108:0,-61.2828,-733.904	0/0:165:165,0:165:5901:0:0:0,-49.6699,-531.198	0/1:215:120,95:120:4312:95:3366:-238.434,0,-323.533	0/0:141:141,0:141:5049:0:0:0,-42.4452,-454.553	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:153:153,0:153:5435:0:0:0,-46.0576,-489.279	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:140:59,81:59:2107:81:2888:-218.011,0,-147.754	0/1:68:21,47:21:748:47:1673:-130.158,0,-47.1753	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:91:90,1:90:3183:1:36:0,-23.7955,-283.093	0/1:127:61,66:61:2162:66:2357:-174.156,0,-156.613	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:264:139,125:139:4961:125:4385:-315.349,0,-367.167	0/0:264:258,5:258:9217:5:180:0,-62.9786,-812.946	0/1:57:26,31:26:932:31:1097:-81.8793,0,-67.0402	0/0:115:114,1:114:4035:1:36:0,-31.0202,-359.739	0/1:182:109,73:109:3884:73:2628:-181.979,0,-294.966	0/0:138:133,5:133:4753:5:180:0,-24.9901,-411.375	0/1:26:12,14:12:428:14:496:-37.1475,0,-31.032	0/0:98:98,0:98:3515:0:0:0,-29.5009,-316.559	0/0:100:100,0:100:3577:0:0:0,-30.103,-322.136	0/1:28:19,9:19:684:9:324:-21.077,0,-53.4615	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.814	0/0:103:103,0:103:3636:0:0:0,-31.0061,-327.442	0/0:140:139,1:139:4966:1:36:0,-38.5459,-443.488	0/1:291:163,128:163:5813:128:4573:-324.135,0,-435.685	0/0:56:56,0:56:1976:0:0:0,-16.8577,-178.112	0/1:130:69,61:69:2457:61:2196:-158.763,0,-182.249	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:188:76,112:76:2705:112:3936:-297.835,0,-187.099	0/0:136:135,1:135:4820:1:36:0,-37.3418,-430.358	0/0:243:243,0:243:8689:0:0:0,-73.1503,-781.956	0/1:100:54,46:54:1944:46:1652:-118.865,0,-145.133	0/0:87:87,0:87:3094:0:0:0,-26.1896,-278.685	0/0:150:150,0:150:5323:0:0:0,-45.1545,-479.204	0/1:199:97,102:97:3435:102:3626:-266.639,0,-249.456	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:99:51,48:51:1821:48:1716:-124.924,0,-134.367	0/0:111:111,0:111:3973:0:0:0,-33.4143,-357.759	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:85:40,45:40:1428:45:1620:-120.502,0,-103.23	0/1:96:36,60:36:1288:60:2156:-165.408,0,-87.3247	0/0:167:167,0:167:5938:0:0:0,-50.272,-534.526	0/0:156:153,2:153:5496:2:72:0,-40.1828,-487.928
chr11	18243695	.	C	T	36925	PASS	AB=0.497966;ABP=3.16933;AC=40;AF=0.212766;AN=188;AO=2227;CIGAR=1X;DP=9731;DPB=9731;DPRA=1.39331;EPP=4812.86;EPPR=16202.3;GTI=0;LEN=1;MEANALT=1;MQM=59.9969;MQMR=59.9996;NS=94;NUMALT=1;ODDS=0.0404214;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78990;QR=267223;RO=7504;RPL=2;RPP=4821.52;RPPR=16185;RPR=2225;RUN=1;SAF=1;SAP=4830.2;SAR=2226;SRF=2;SRP=16280.4;SRR=7502;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/1:153:92,61:92:3275:61:2153:-147.979,0,-248.913	0/0:121:121,0:121:4315:0:0:0,-36.4246,-388.527	0/1:218:106,112:106:3778:112:3986:-293.307,0,-274.595	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:88:88,0:88:3151:0:0:0,-26.4906,-283.814	0/0:63:63,0:63:2247:0:0:0,-18.9649,-202.493	0/0:169:169,0:169:6006:0:0:0,-50.8741,-540.647	0/1:139:78,61:78:2773:61:2180:-154.623,0,-207.967	0/0:125:125,0:125:4456:0:0:0,-37.6287,-401.213	0/0:51:51,0:51:1799:0:0:0,-15.3525,-162.189	0/1:61:24,37:24:821:37:1302:-99.117,0,-55.8371	0/1:56:35,21:35:1243:21:748:-50.7876,0,-95.3162	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:40:12,28:12:428:28:963:-74.937,0,-26.8161	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.715	0/0:71:71,0:71:2513:0:0:0,-21.3731,-226.421	0/1:53:25,28:25:875:28:976:-72.1951,0,-63.1115	0/1:64:41,23:41:1444:23:807:-53.6832,0,-110.987	0/1:114:56,58:56:2004:58:2084:-153.513,0,-146.316	0/0:193:192,1:192:6845:1:36:0,-54.5005,-612.523	0/1:32:6,26:6:216:26:928:-74.2053,0,-10.1576	0/1:116:50,66:50:1788:66:2329:-174.95,0,-126.283	0/0:152:152,0:152:5418:0:0:0,-45.7566,-487.751	0/0:76:75,1:75:2671:1:36:0,-19.28,-237.037	0/1:220:92,128:92:3281:128:4560:-344.341,0,-229.282	0/0:339:338,1:338:12054:1:36:0,-98.4509,-1081.12	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.484	0/0:167:167,0:167:5950:0:0:0,-50.272,-535.61	0/1:162:61,101:61:2192:101:3588:-274.363,0,-148.779	0/0:177:177,0:177:6319:0:0:0,-53.2823,-568.804	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.477	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:187:101,86:101:3563:86:3059:-219.247,0,-264.584	0/1:270:131,139:131:4667:139:4889:-358.89,0,-338.915	0/0:102:102,0:102:3631:0:0:0,-30.7051,-326.994	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:186:186,0:186:6660:0:0:0,-55.9916,-599.478	0/0:41:41,0:41:1450:0:0:0,-12.3422,-130.794	0/0:175:175,0:175:6224:0:0:0,-52.6802,-560.259	0/0:161:161,0:161:5691:0:0:0,-48.4658,-512.312	0/0:67:67,0:67:2381:0:0:0,-20.169,-214.546	0/1:133:89,44:89:3191:44:1564:-101.015,0,-247.375	0/1:136:77,59:77:2755:59:2079:-146.44,0,-207.251	0/0:224:224,0:224:8004:0:0:0,-67.4307,-720.381	0/0:96:96,0:96:3423:0:0:0,-28.8989,-308.284	0/1:205:106,99:106:3783:99:3528:-256.02,0,-278.958	0/0:152:152,0:152:5437:0:0:0,-45.7566,-489.458	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:111:111,0:111:3971:0:0:0,-33.4143,-357.58	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:17:13,4:13:455:4:144:-8.19611,0,-36.1644	0/1:106:48,58:48:1724:58:2084:-155.921,0,-123.536	0/1:87:46,41:46:1631:41:1468:-106.226,0,-120.888	1/1:8:0,8:0:0:8:265:-24.1721,-2.40824,0	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:85:84,1:84:2995:1:36:0,-21.9893,-266.184	0/1:98:46,52:46:1628:52:1839:-136.289,0,-117.305	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:259:121,138:121:4331:138:4892:-362.47,0,-311.998	0/0:221:219,2:219:7826:2:72:0,-59.6909,-697.533	0/1:69:34,35:34:1216:35:1243:-91.4034,0,-88.9755	0/0:108:108,0:108:3842:0:0:0,-32.5112,-345.977	0/1:356:195,161:195:6979:161:5703:-406.228,0,-521.004	0/0:82:81,1:81:2884:1:36:0,-21.0862,-256.199	0/1:23:11,12:11:387:12:424:-31.5727,0,-28.2422	0/0:76:74,2:74:2629:2:72:0,-16.0416,-230.02	0/0:72:72,0:72:2554:0:0:0,-21.6742,-230.11	0/1:30:22,8:22:784:8:288:-17.2365,0,-61.853	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.509	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/0:172:172,0:172:6114:0:0:0,-51.7772,-550.365	0/1:171:87,84:87:3111:84:2988:-217.677,0,-228.74	0/0:140:140,0:140:5007:0:0:0,-42.1442,-450.777	0/1:201:116,85:116:4135:85:3012:-210.806,0,-311.828	0/1:17:14,3:14:496:3:108:-4.95766,0,-39.8568	0/1:110:37,73:37:1316:73:2604:-201.494,0,-85.6285	0/0:89:89,0:89:3178:0:0:0,-26.7917,-286.243	0/0:191:191,0:191:6799:0:0:0,-57.4967,-611.984	0/1:98:43,55:43:1527:55:1944:-145.735,0,-108.221	0/0:35:35,0:35:1241:0:0:0,-10.536,-111.993	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/1:129:64,65:64:2229:65:2290:-167.527,0,-162.036	0/0:54:53,1:53:1877:1:36:0,-12.6573,-165.608	0/1:74:40,34:40:1428:34:1216:-87.4703,0,-106.541	0/0:55:55,0:55:1921:0:0:0,-16.5566,-173.163	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5607	0/1:85:46,39:46:1611:39:1374:-98.369,0,-119.688	0/1:135:56,79:56:2008:79:2805:-212.044,0,-140.354	0/0:128:128,0:128:4580:0:0:0,-38.5318,-412.365	0/0:83:83,0:83:2896:0:0:0,-24.9855,-260.873
chr11	18334962	.	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chr11	18450479	.	T	C	24541.5	PASS	AB=0.484375;ABP=9.52472;AC=40;AF=0.212766;AN=188;AO=1501;CIGAR=1X;DP=6935;DPB=6935;DPRA=1.27168;EPP=2998.69;EPPR=11280.9;GTI=1;LEN=1;MEANALT=1.06667;MQM=44.0826;MQMR=59.6183;NS=94;NUMALT=1;ODDS=1.63717;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53269;QR=193959;RO=5431;RPL=31;RPP=2998.69;RPPR=11289.4;RPR=1470;RUN=1;SAF=0;SAP=3262.39;SAR=1501;SRF=1;SRP=11787.6;SRR=5430;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.133	0/1:65:39,26:39:1381:26:928:-58.7953,0,-104.974	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.054	0/1:140:61,79:61:2169:79:2828:-208.797,0,-152.845	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.222	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.002	0/0:82:82,0:82:2920:0:0:0,-24.6845,-262.984	0/1:72:44,28:44:1576:28:1004:-66.0873,0,-120.457	0/0:76:76,0:76:2704:0:0:0,-22.8783,-243.601	0/0:59:59,0:59:2084:0:0:0,-17.7608,-187.802	0/1:108:50,58:50:1792:58:2043:-145.162,0,-129.029	0/1:78:48,30:48:1716:30:1059:-68.4278,0,-131.244	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.042	0/1:70:38,32:38:1368:32:1137:-80.1703,0,-102.349	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.698	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.355	0/1:29:12,17:12:432:17:591:-43.1922,0,-30.4913	0/1:42:20,22:20:716:22:792:-56.7207,0,-52.1245	0/1:125:55,69:55:1950:69:2462:-180.477,0,-138.157	0/0:151:151,0:151:5389:0:0:0,-45.4555,-485.096	0/1:25:11,14:11:396:14:504:-37.8491,0,-28.457	0/1:88:53,35:53:1896:35:1243:-83.0806,0,-144.392	0/0:70:70,0:70:2503:0:0:0,-21.0721,-225.435	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1254	0/1:181:90,91:90:3213:91:3218:-231.988,0,-234.895	0/0:160:160,0:160:5705:0:0:0,-48.1648,-513.007	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:125:125,0:125:4451:0:0:0,-37.6287,-400.727	0/1:114:55,58:55:1964:58:2084:-146.739,0,-142.509	0/0:148:148,0:148:5305:0:0:0,-44.5524,-477.557	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5437	0/1:22:19,3:19:684:3:108:-2.65914,0,-55.2677	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0523	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:190:109,81:109:3879:81:2888:-199.965,0,-292.1	0/1:116:54,62:54:1902:62:2212:-159.125,0,-136.516	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.117	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:106:106,0:106:3739:0:0:0,-31.9092,-336.703	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.838	0/0:81:81,0:81:2887:0:0:0,-24.3834,-259.796	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.808	0/0:70:70,0:70:2490:0:0:0,-21.0721,-224.299	0/1:81:40,41:40:1432:41:1468:-106.995,0,-104.73	0/1:61:31,30:31:1089:30:1057:-74.177,0,-79.9459	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.854	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.794	0/1:64:31,33:31:1103:33:1180:-84.8926,0,-80.2786	0/0:107:107,0:107:3819:0:0:0,-32.2102,-343.876	0/1:8:4,4:4:144:4:136:-9.77855,0,-10.905	0/0:116:116,0:116:4168:0:0:0,-34.9195,-375.21	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.537	0/1:9:5,4:5:180:4:136:-9.66957,0,-13.8424	0/1:108:53,55:53:1877:55:1952:-139.175,0,-136.477	0/1:31:16,15:16:576:15:540:-38.7646,0,-42.8431	0/1:2:1,1:1:36:1:36:-2.96475,0,-2.99621	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6899	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.416	0/1:103:57,45:57:2044:45:1586:-109.241,0,-153.022	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:145:81,64:81:2904:64:2267:-158.038,0,-217.9	0/0:145:141,4:141:5019:4:140:0,-30.7808,-438.964	0/1:39:13,26:13:446:26:919:-69.6718,0,-28.7262	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.971	0/1:145:90,55:90:3228:55:1934:-128.488,0,-247.005	0/0:135:133,2:133:4737:2:72:0,-33.8496,-419.525	0/1:32:13,19:13:468:19:650:-47.9651,0,-32.8267	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.771	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.707	0/1:10:5,5:5:176:5:176:-12.9474,0,-13.1458	0/0:159:156,3:156:5576:3:99:0,-38.906,-492.789	0/0:90:90,0:90:3220:0:0:0,-27.0927,-289.97	0/0:175:175,0:175:6268:0:0:0,-52.6802,-563.881	0/1:123:62,61:62:2203:61:2172:-156.014,0,-161.434	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6305	0/1:88:37,51:37:1332:51:1802:-129.982,0,-93.6917	0/1:3:1,2:1:36:2:72:-5.71023,0,-2.69518	0/1:76:44,32:44:1584:32:1143:-78.0913,0,-119.945	0/0:100:100,0:100:3579:0:0:0,-30.103,-322.174	0/0:140:138,2:138:4944:2:68:0,-35.7533,-438.701	0/1:56:23,33:23:824:33:1155:-86.1383,0,-57.569	0/0:66:66,0:66:2351:0:0:0,-19.868,-211.796	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.467	0/1:146:84,62:84:3003:62:2207:-152.272,0,-226.46	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6049	0/1:68:37,31:37:1300:31:1100:-75.5811,0,-96.7831	0/0:65:65,0:65:2319:0:0:0,-19.5669,-208.965	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.434	0/1:127:69,58:69:2476:58:2043:-141.531,0,-184.839	0/1:79:24,55:24:860:55:1950:-148.163,0,-53.9405	0/0:110:110,0:110:3923:0:0:0,-33.1133,-353.208	0/0:85:83,2:83:2980:2:72:0,-18.8454,-261.614
chr11	18450490	.	T	C	117303	PASS	AB=0.509958;ABP=5.64825;AC=148;AF=0.787234;AN=188;AO=5420;CIGAR=1X;DP=6939;DPB=6939;DPRA=0;EPP=11282.5;EPPR=3018.55;GTI=1;LEN=1;MEANALT=1.05319;MQM=59.6268;MQMR=44.1182;NS=94;NUMALT=1;ODDS=2.00053;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192895;QR=53889;RO=1514;RPL=58;RPP=11274;RPPR=3018.55;RPR=5362;RUN=1;SAF=1;SAP=11763.7;SAR=5419;SRF=0;SRP=3290.62;SRR=1514;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1271:-114.639,-10.8371,0	0/1:66:27,39:27:953:39:1404:-106.746,0,-60.4262	1/1:102:1,101:1:36:101:3566:-317.045,-27.1068,0	0/1:139:79,60:79:2836:60:2141:-150.645,0,-209.764	1/1:37:0,37:0:0:37:1315:-118.651,-11.1381,0	1/1:8:0,8:0:0:8:288:-26.222,-2.40824,0	1/1:75:0,75:0:0:75:2688:-242.071,-22.5773,0	1/1:81:0,81:0:0:81:2896:-260.737,-24.3834,0	0/1:72:29,43:29:1035:43:1539:-117.128,0,-68.8108	1/1:73:0,72:0:0:72:2588:-232.807,-21.6742,0	1/1:60:0,60:0:0:60:2100:-189.258,-18.0618,0	0/1:111:62,49:62:2216:49:1743:-123.717,0,-158.319	0/1:79:31,48:31:1091:48:1687:-128.331,0,-70.8602	1/1:61:0,61:0:0:61:2158:-194.421,-18.3628,0	0/1:70:33,37:33:1176:37:1319:-97.9391,0,-83.6921	1/1:55:1,54:1:36:54:1919:-169.36,-12.9584,0	1/1:47:0,47:0:0:47:1677:-151.167,-14.1484,0	0/1:28:16,12:16:568:12:432:-30.7924,0,-41.3276	0/1:43:22,21:22:792:21:748:-54.6992,0,-56.4197	0/1:123:69,54:69:2468:54:1908:-134.873,0,-181.141	1/1:154:0,154:0:0:154:5490:-494.172,-46.3586,0	0/1:25:14,11:14:504:11:392:-28.0943,0,-37.8491	0/1:87:34,53:34:1208:53:1889:-144.079,0,-80.4054	1/1:68:0,68:0:0:68:2422:-218.155,-20.47,0	1/1:25:0,25:0:0:25:888:-80.1656,-7.52575,0	0/1:182:91,91:91:3235:91:3263:-239.084,0,-232.667	1/1:160:0,160:0:0:160:5716:-513.991,-48.1648,0	1/1:29:0,29:0:0:29:1035:-93.4631,-8.72987,0	1/1:124:0,124:0:0:124:4408:-396.871,-37.3277,0	0/1:112:58,54:58:2066:54:1926:-139.742,0,-146.449	1/1:149:0,149:0:0:149:5315:-478.448,-44.8535,0	1/1:5:0,5:0:0:5:180:-16.5437,-1.50515,0	0/1:23:3,20:3:100:20:716:-57.844,0,-1.92016	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:13:0,13:0:0:13:468:-42.4145,-3.91339,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:193:84,109:84:3007:109:3846:-288.229,0,-209.031	0/1:114:61,51:61:2188:51:1800:-128.195,0,-157.787	1/1:47:0,47:0:0:47:1668:-149.973,-14.1484,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:110:0,110:0:0:110:3925:-353.41,-33.1133,0	1/1:36:1,35:1:36:35:1247:-108.83,-7.23881,0	1/1:80:0,80:0:0:80:2840:-255.779,-24.0824,0	1/1:58:0,58:0:0:58:2068:-186.373,-17.4597,0	1/1:70:1,69:1:36:69:2442:-216.383,-17.4738,0	0/1:79:41,37:41:1452:37:1305:-93.8548,0,-106.087	0/1:59:30,29:30:1071:29:1029:-75.1518,0,-75.8898	1/1:78:0,78:0:0:78:2777:-250.135,-23.4803,0	1/1:76:0,76:0:0:76:2695:-242.698,-22.8783,0	0/1:62:33,29:33:1184:29:1016:-73.0498,0,-85.4109	1/1:108:0,108:0:0:108:3845:-346.215,-32.5112,0	0/1:8:4,4:4:144:4:140:-10.5359,0,-10.2643	1/1:118:0,118:0:0:118:4210:-379.029,-35.5215,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	0/1:9:3,6:3:108:6:216:-17.0808,0,-7.11705	0/1:106:54,52:54:1922:52:1812:-131.229,0,-136.929	0/1:31:15,15:15:536:15:540:-39.5458,0,-38.3711	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.96475	1/1:14:0,14:0:0:14:485:-43.9688,-4.21442,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	0/1:104:48,56:48:1703:56:1992:-148.115,0,-119.347	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:143:64,79:64:2285:79:2835:-211.97,0,-160.559	1/1:148:4,144:4:144:144:5146:-450.078,-31.3563,0	0/1:40:27,13:27:941:13:451:-28.8786,0,-71.2846	1/1:74:0,74:0:0:74:2639:-237.724,-22.2762,0	0/1:141:54,87:54:1909:87:3115:-238.113,0,-127.098	1/1:133:2,131:2:72:131:4669:-413.45,-33.2475,0	0/1:31:19,12:19:664:12:432:-29.8893,0,-49.4315	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:61:0,61:0:0:61:2149:-193.668,-18.3628,0	0/1:9:4,5:4:144:5:172:-13.0969,0,-10.3948	1/1:157:3,154:3:108:154:5498:-485.241,-37.7347,0	1/1:93:0,93:0:0:93:3340:-300.764,-27.9958,0	1/1:175:0,175:0:0:175:6248:-562.136,-52.6803,0	0/1:122:58,64:58:2061:64:2285:-169.162,0,-146.488	1/1:28:0,28:0:0:28:1004:-90.6305,-8.42884,0	0/1:88:52,36:52:1859:36:1277:-88.7405,0,-134.475	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.39468	0/1:78:33,45:33:1188:45:1601:-120.869,0,-81.4093	1/1:99:0,99:0:0:99:3545:-319.114,-29.802,0	1/1:143:2,141:2:72:141:5002:-443.558,-36.3051,0	0/1:55:32,23:32:1148:23:820:-57.5093,0,-85.69	1/1:66:0,66:0:0:66:2350:-211.718,-19.868,0	1/1:52:0,52:0:0:52:1842:-165.968,-15.6536,0	0/1:149:65,84:65:2294:84:3004:-225.68,0,-159.179	1/1:23:0,23:0:0:23:807:-72.9486,-6.92369,0	0/1:69:32,37:32:1136:37:1315:-97.861,0,-78.3701	1/1:69:0,69:0:0:69:2427:-218.68,-20.7711,0	1/1:38:0,38:0:0:38:1339:-120.781,-11.4391,0	0/1:126:57,69:57:2011:69:2443:-182.187,0,-139.327	0/1:80:55,25:55:1934:25:891:-56.4264,0,-146.456	1/1:109:0,109:0:0:109:3867:-348.153,-32.8123,0	1/1:86:2,84:2:72:84:2981:-261.705,-19.1464,0
chr11	18450516	.	T	A	23347	PASS	AB=0.480549;ABP=13.0627;AC=39;AF=0.207447;AN=188;AO=1480;CIGAR=1X;DP=6968;DPB=6968;DPRA=1.26671;EPP=3216.79;EPPR=11915.7;GTI=0;LEN=1;MEANALT=1.02222;MQM=43.7324;MQMR=59.6034;NS=94;NUMALT=1;ODDS=2.39693;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53044;QR=196164;RO=5486;RPL=1480;RPP=3216.79;RPPR=11915.7;RPR=0;RUN=1;SAF=0;SAP=3216.79;SAR=1480;SRF=0;SRP=11915.7;SRR=5486;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:30,0:30:1080:0:0:0,-9.0309,-97.1129	0/1:66:40,26:40:1436:26:936:-58.7386,0,-109.624	0/0:106:106,0:106:3782:0:0:0,-31.9092,-340.348	0/1:137:61,76:61:2177:76:2732:-201.029,0,-154.468	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7449	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.099	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.583	0/1:74:44,30:44:1584:30:1076:-71.7849,0,-120.575	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.569	0/1:110:50,60:50:1800:60:2150:-153.021,0,-129.146	0/1:81:49,32:49:1760:32:1148:-74.7423,0,-134.299	0/0:61:61,0:61:2181:0:0:0,-18.3628,-196.469	0/1:71:38,33:38:1368:33:1184:-84.0139,0,-102.048	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.058	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.355	0/1:29:12,17:12:428:17:604:-44.0193,0,-30.1289	0/1:43:21,22:21:756:22:792:-56.4197,0,-55.4183	0/1:123:53,70:53:1900:70:2508:-184.934,0,-133.717	0/0:159:159,0:159:5652:0:0:0,-47.8638,-508.735	0/1:20:11,9:11:396:9:324:-23.1606,0,-29.9621	0/1:84:51,33:51:1802:33:1169:-77.8739,0,-137.154	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.605	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.486	0/1:178:90,88:90:3180:88:3122:-224.373,0,-232.82	0/0:162:162,0:162:5797:0:0:0,-48.7669,-521.254	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:129:129,0:129:4602:0:0:0,-38.8329,-414.316	0/1:115:56,59:56:1997:59:2120:-149.873,0,-145.225	0/0:151:151,0:151:5417:0:0:0,-45.4555,-487.621	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5437	0/1:24:20,4:20:693:4:144:-5.23114,0,-55.4649	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:13:12,1:12:432:1:36:0,-0.364875,-35.6727	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:194:110,84:110:3956:84:3020:-209.929,0,-297.82	0/1:106:50,56:50:1792:56:2012:-143.951,0,-129.633	0/0:48:48,0:48:1701:0:0:0,-14.4494,-152.936	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:107:107,0:107:3810:0:0:0,-32.2102,-343.047	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.838	0/0:76:76,0:76:2732:0:0:0,-22.8783,-245.63	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.177	0/0:73:73,0:73:2613:0:0:0,-21.9752,-235.362	0/1:77:42,34:42:1497:34:1224:-86.2166,0,-111.724	0/1:56:28,28:28:1008:28:1004:-70.7355,0,-74.1701	0/0:78:78,0:78:2793:0:0:0,-23.4803,-251.556	0/0:79:79,0:79:2821:0:0:0,-23.7814,-253.982	0/1:66:32,34:32:1133:34:1224:-87.7345,0,-82.3734	0/0:108:108,0:108:3872:0:0:0,-32.5112,-348.61	0/1:7:4,3:4:129:3:108:-7.82863,0,-9.82004	0/0:118:118,0:118:4228:0:0:0,-35.5215,-380.609	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:10:6,4:6:216:4:140:-9.72034,0,-16.7798	0/1:108:54,54:54:1925:54:1944:-138.146,0,-140.795	0/1:30:16,14:16:576:14:504:-35.8267,0,-43.1441	0/1:2:1,1:1:36:1:36:-2.96475,0,-2.99621	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6899	0/0:67:67,0:67:2412:0:0:0,-20.169,-217.336	0/1:104:58,46:58:2084:46:1656:-115.065,0,-156.373	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:147:83,64:83:2973:64:2304:-160.664,0,-223.501	0/0:148:146,2:146:5218:2:57:0,-39.1889,-464.37	0/1:38:12,26:12:432:26:917:-69.7587,0,-27.7821	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.168	0/1:146:91,55:91:3227:55:1976:-131.348,0,-246.678	0/0:135:134,1:134:4775:1:36:0,-37.0905,-426.221	0/1:31:14,17:14:500:17:612:-44.6967,0,-35.9342	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:65:65,0:65:2321:0:0:0,-19.5669,-208.954	0/1:10:5,5:5:180:5:180:-13.2876,0,-13.5128	0/0:161:159,2:159:5716:2:72:0,-41.8525,-507.697	0/0:94:94,0:94:3369:0:0:0,-28.2968,-303.371	0/0:178:178,0:178:6344:0:0:0,-53.5833,-570.654	0/1:125:64,61:64:2276:61:2192:-157.079,0,-167.435	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.2756	0/1:89:37,52:37:1328:52:1864:-134.593,0,-93.0306	0/1:3:1,2:1:36:2:57:-4.3945,0,-2.69518	0/1:76:44,32:44:1569:32:1152:-78.8425,0,-118.593	0/0:103:103,0:103:3662:0:0:0,-31.0061,-329.639	0/0:144:142,2:142:5076:2:68:0,-36.9574,-450.545	0/1:58:24,34:24:864:34:1224:-91.5081,0,-60.5662	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.685	0/0:52:52,0:52:1857:0:0:0,-15.6536,-167.317	0/1:146:84,62:84:3005:62:2213:-152.785,0,-226.638	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8433	0/1:68:37,31:37:1324:31:1112:-76.4384,0,-98.9467	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.378	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.154	0/1:126:70,56:70:2512:56:2003:-138.027,0,-188.378	0/1:81:25,56:25:900:56:2016:-153.298,0,-56.9376	0/0:113:113,0:113:4049:0:0:0,-34.0164,-364.461	0/0:87:85,2:85:3037:2:72:0,-19.4474,-266.74
chr11	18520138	.	CG	TG,TA	118898	PASS	AB=0.480016,0.518773;ABP=11.6024,10.5925;AC=146,42;AF=0.776596,0.223404;AN=188;AO=4216,1291;CIGAR=1X1M,2X;DP=5514;DPB=5514;DPRA=29.6344,1.13719;EPP=9157.94,2806.38;EPPR=7.35324;GTI=1;LEN=1,2;MEANALT=1.51613,2.06818;MQM=59.8546,57.9373;MQMR=60;NS=94;NUMALT=2;ODDS=1.07504;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=150588,45479;QR=70;RO=2;RPL=4212,1291;RPP=9123.23,2806.38;RPPR=7.35324;RPR=4,0;RUN=1,1;SAF=4212,1291;SAP=9123.23,2806.38;SAR=4,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:32:0,7,25:0:0:7,25:243,877:-91.3024,-71.55,-69.4428,-20.1,0,-12.5742	1/1:66:0,66,0:0:0:66,0:2364,0:-213.016,-19.868,0,-213.016,-19.868,-213.016	1/2:109:0,52,55:0:0:52,55:1860,1948:-310.257,-158.591,-142.937,-151.662,0,-135.105	2/2:2:0,0,2:0:0:0,2:0,72:-6.83481,-6.83481,-6.83481,-0.60206,-0.60206,0	1/1:15:0,15,0:0:0:15,0:540,0:-48.9356,-4.51545,0,-48.9356,-4.51545,-48.9356	1/1:51:0,51,0:0:0:51,0:1824,0:-164.441,-15.3525,0,-164.441,-15.3525,-164.441	1/1:98:0,96,1:0:0:96,1:3436,36:-309.118,-28.8989,0,-306.183,-25.9232,-305.882	1/2:72:0,41,31:0:0:41,31:1468,1084:-207.246,-87.6001,-75.2579,-119.997,0,-110.665	1/1:60:0,60,0:0:0:60,0:2135,0:-192.418,-18.0618,0,-192.418,-18.0618,-192.418	1/1:73:0,73,0:0:0:73,0:2594,0:-233.708,-21.9752,0,-233.708,-21.9752,-233.708	1/2:82:0,38,44:0:0:38,44:1352,1556:-237.092,-126.91,-115.471,-110.536,0,-97.2908	1/2:66:0,37,29:0:0:37,29:1324,1028:-191.766,-83.8172,-72.679,-108.304,0,-99.5742	1/1:84:0,84,0:0:0:84,0:2990,0:-269.326,-25.2865,0,-269.326,-25.2865,-269.326	1/2:60:0,30,30:0:0:30,30:1080,1067:-175.116,-86.991,-77.9601,-88.4823,0,-79.4514	1/1:62:1,61,0:1:34:61,0:2192,0:-194.145,-15.2649,0,-194.446,-18.3628,-197.203	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/2:20:0,10,10:0:0:10,10:360,354:-58.5471,-29.1698,-26.1595,-29.734,0,-26.7237	1/2:24:0,12,12:0:0:12,12:432,428:-70.4156,-35.1646,-31.5522,-35.6088,0,-31.9965	1/2:49:0,20,29:0:0:20,29:720,1013:-141.382,-82.6296,-76.609,-59.1082,0,-50.3783	1/1:106:0,105,0:0:0:105,0:3747,0:-337.151,-31.6082,0,-337.151,-31.6082,-337.151	1/2:34:0,15,19:0:0:15,19:517,649:-94.9841,-52.9881,-48.4726,-42.3392,0,-36.6196	1/2:55:0,19,36:0:0:19,36:669,1270:-158.225,-103.763,-98.0432,-54.8144,0,-43.9773	1/1:46:0,46,0:0:0:46,0:1652,0:-148.964,-13.8474,0,-148.964,-13.8474,-148.964	1/1:28:1,27,0:1:36:27,0:968,0:-83.8382,-4.83057,0,-84.1392,-8.12781,-87.0767	1/2:159:0,83,76:0:0:83,76:2976,2664:-459.576,-216.899,-191.913,-243.031,0,-220.153	1/1:139:0,139,0:0:0:139,0:4939,0:-444.653,-41.8432,0,-444.653,-41.8432,-444.653	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:153:0,153,0:0:0:153,0:5410,0:-487.013,-46.0576,0,-487.013,-46.0576,-487.013	1/2:75:0,36,39:0:0:36,39:1281,1390:-217.576,-113.178,-102.34,-104.754,0,-93.014	1/1:64:0,64,0:0:0:64,0:2283,0:-205.731,-19.2659,0,-205.731,-19.2659,-205.731	1/2:12:0,9,3:0:0:9,3:316,106:-34.672,-8.98354,-6.27427,-26.0409,0,-25.1378	1/1:16:0,16,0:0:0:16,0:574,0:-51.9914,-4.81648,0,-51.9914,-4.81648,-51.9914	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:9:0,9,0:0:0:9,0:320,0:-29.1422,-2.70927,0,-29.1422,-2.70927,-29.1422	1/2:175:0,88,87:0:0:88,87:3147,3091:-508.447,-251.859,-225.368,-256.944,0,-230.755	1/2:56:0,31,25:0:0:31,25:1092,896:-162.222,-73.3225,-63.9906,-89.2549,0,-81.7291	1/1:26:0,26,0:0:0:26,0:924,0:-83.4733,-7.82678,0,-83.4733,-7.82678,-83.4733	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:53:0,53,0:0:0:53,0:1900,0:-171.272,-15.9546,0,-171.272,-15.9546,-171.272	1/1:20:0,20,0:0:0:20,0:720,0:-65.1003,-6.0206,0,-65.1003,-6.0206,-65.1003	1/1:47:0,47,0:0:0:47,0:1684,0:-151.816,-14.1484,0,-151.816,-14.1484,-151.816	1/1:40:0,40,0:0:0:40,0:1410,0:-127.196,-12.0412,0,-127.196,-12.0412,-127.196	1/1:51:0,51,0:0:0:51,0:1824,0:-164.44,-15.3525,0,-164.44,-15.3525,-164.44	1/2:54:0,24,30:0:0:24,30:852,1061:-155.919,-86.4971,-79.2724,-69.7757,0,-60.7448	1/2:36:0,14,22:0:0:14,22:504,762:-103.361,-62.2315,-58.0171,-41.4837,0,-34.861	1/1:96:0,96,0:0:0:96,0:3407,0:-306.826,-28.8989,0,-306.826,-28.8989,-306.826	1/1:43:0,43,0:0:0:43,0:1544,0:-139.239,-12.9443,0,-139.239,-12.9443,-139.239	1/2:62:0,30,31:0:0:30,31:1080,1112:-178.892,-90.7669,-81.736,-88.2291,0,-78.8972	1/1:70:0,70,0:0:0:70,0:2499,0:-225.16,-21.0721,0,-225.16,-21.0721,-225.16	1/2:7:0,2,5:0:0:2,5:68,180:-20.5207,-15.0104,-14.4084,-5.85565,0,-4.3505	1/1:56:0,56,0:0:0:56,0:2016,0:-181.711,-16.8577,0,-181.711,-16.8577,-181.711	1/1:53:0,53,0:0:0:53,0:1908,0:-171.993,-15.9546,0,-171.993,-15.9546,-171.993	1/2:11:0,4,7:0:0:4,7:144,232:-30.8446,-19.0845,-17.8804,-12.1095,0,-10.0023	1/2:107:0,41,66:0:0:41,66:1459,2267:-303.141,-184.229,-171.887,-119.262,0,-99.3941	1/2:16:0,11,5:0:0:11,5:396,180:-47.3585,-15.0469,-11.7356,-32.6714,0,-31.1663	1/2:8:0,2,6:0:0:2,6:72,214:-23.669,-17.79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chr11	19237145	.	C	T	47822.4	PASS	AB=0.516272;ABP=15.4481;AC=40;AF=0.212766;AN=188;AO=2798;CIGAR=1X;DP=12318;DPB=12318;DPRA=1.02638;EPP=6061.43;EPPR=20279.8;GTI=0;LEN=1;MEANALT=1.08889;MQM=59.8417;MQMR=59.9706;NS=94;NUMALT=1;ODDS=1.02174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=99961;QR=337979;RO=9513;RPL=2;RPP=6061.43;RPPR=20279.8;RPR=2796;RUN=1;SAF=2798;SAP=6078.79;SAR=0;SRF=9513;SRP=20660.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:74:74,0:74:2551:0:0:0,-22.2762,-229.84	0/1:240:128,112:128:4552:112:3991:-287.132,0,-337.6	0/0:138:138,0:138:4938:0:0:0,-41.5421,-444.569	0/1:390:193,197:193:6832:197:7016:-512.805,0,-497.554	0/0:169:168,1:168:5969:1:36:0,-47.2758,-533.722	0/0:92:92,0:92:3282:0:0:0,-27.6948,-295.596	0/0:218:218,0:218:7767:0:0:0,-65.6245,-698.635	0/0:259:259,0:259:9195:0:0:0,-77.9668,-827.527	0/1:166:83,82:83:2911:82:2915:-212.551,0,-212.196	0/0:107:106,0:106:3776:0:0:0,-31.9092,-339.82	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.639	0/1:85:49,36:49:1729:36:1270:-89.0044,0,-130.305	0/1:60:30,30:30:1072:30:1060:-77.3775,0,-78.7307	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.004	0/1:62:32,30:32:1135:30:1076:-78.489,0,-83.7942	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/1:51:22,29:22:792:29:1031:-77.7363,0,-56.2531	0/1:55:23,32:23:824:32:1148:-87.0723,0,-57.9267	0/1:418:194,224:194:6880:224:8005:-594.505,0,-493.439	0/0:274:274,0:274:9631:0:0:0,-82.4822,-866.689	0/1:157:58,99:58:2035:99:3521:-269.838,0,-136.161	0/1:89:41,48:41:1456:48:1715:-127.842,0,-104.544	0/0:227:227,0:227:8091:0:0:0,-68.3338,-728.212	0/0:87:87,0:87:3101:0:0:0,-26.1896,-279.316	0/1:476:236,240:236:8383:240:8581:-628.995,0,-611.178	0/0:336:336,0:336:11959:0:0:0,-101.146,-1076.17	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:459:459,0:459:16337:0:0:0,-138.173,-1470.01	0/1:140:69,71:69:2445:71:2540:-186.389,0,-178.16	0/0:128:128,0:128:4554:0:0:0,-38.5318,-410.028	0/1:21:5,15:5:176:15:540:-42.5561,0,-9.80592	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:226:103,123:103:3671:123:4406:-328.242,0,-262.561	0/1:252:117,135:117:4151:135:4827:-358.723,0,-297.647	0/0:84:84,0:84:2970:0:0:0,-25.2865,-267.534	0/0:13:12,1:12:428:1:36:0,-0.315115,-35.2605	0/0:168:168,0:168:5935:0:0:0,-50.573,-534.262	0/0:41:41,0:41:1463:0:0:0,-12.3422,-131.965	0/0:264:264,0:264:9377:0:0:0,-79.4719,-843.894	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/0:89:89,0:89:3170:0:0:0,-26.7917,-285.524	0/1:148:51,97:51:1807:97:3456:-266.471,0,-118.359	0/1:61:37,24:37:1324:24:860:-59.359,0,-101.099	0/0:143:141,2:141:4996:2:72:0,-36.2106,-442.952	0/0:115:115,0:115:4110:0:0:0,-34.6184,-370.083	0/1:227:124,103:124:4405:103:3704:-265.223,0,-328.282	0/0:237:237,0:237:8426:0:0:0,-71.3441,-758.348	0/1:22:11,11:11:392:11:392:-28.9974,0,-28.9974	0/0:168:168,0:168:5961:0:0:0,-50.573,-536.602	0/0:29:29,0:29:1009:0:0:0,-8.72987,-91.1189	0/1:22:10,12:10:356:12:432:-32.5808,0,-25.7586	0/1:112:52,60:52:1856:60:2128:-158.071,0,-133.604	0/1:83:32,51:32:1136:51:1822:-139.275,0,-77.563	0/1:26:14,12:14:487:12:419:-30.2159,0,-36.3324	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.521	0/0:79:79,0:79:2796:0:0:0,-23.7814,-251.88	0/1:126:57,69:57:2027:69:2484:-185.883,0,-144.772	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:181:87,93:87:3108:93:3322:-244.758,0,-225.521	0/0:374:373,0:373:13281:0:0:0,-112.284,-1194.89	0/1:94:44,50:44:1572:50:1775:-131.722,0,-113.475	0/0:96:96,0:96:3416:0:0:0,-28.8989,-307.656	0/1:230:129,101:129:4555:101:3612:-256.03,0,-340.513	0/0:151:150,1:150:5323:1:36:0,-41.8573,-475.606	0/1:26:19,7:19:684:7:252:-15.2022,0,-54.0635	0/0:131:131,0:131:4630:0:0:0,-39.4349,-416.866	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.065	0/1:26:16,10:16:572:10:356:-24.5545,0,-43.9866	0/0:100:100,0:100:3537:0:0:0,-30.103,-318.523	0/0:77:77,0:77:2735:0:0:0,-23.1793,-246.393	0/0:254:254,0:254:8999:0:0:0,-76.4616,-809.892	0/1:224:119,105:119:4231:105:3762:-271.318,0,-313.542	0/0:93:92,1:92:3276:1:36:0,-24.3975,-291.46	0/1:156:89,67:89:3148:67:2396:-168.922,0,-236.585	0/1:20:8,12:8:288:12:428:-32.8382,0,-20.2468	0/1:178:77,99:77:2764:99:3532:-264.749,0,-195.66	0/0:118:118,0:118:4174:0:0:0,-35.5215,-375.843	0/0:362:362,0:362:12866:0:0:0,-108.973,-1157.77	0/1:92:45,47:45:1603:47:1684:-124.152,0,-116.865	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.345	0/0:104:104,0:104:3716:0:0:0,-31.3071,-334.642	0/1:171:77,94:77:2742:94:3372:-252.219,0,-195.546	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.545	0/1:103:47,56:47:1663:56:1999:-149.17,0,-118.932	0/0:73:73,0:73:2602:0:0:0,-21.9752,-234.428	0/0:39:39,0:39:1378:0:0:0,-11.7402,-124.317	0/1:84:44,40:44:1567:40:1436:-104.251,0,-115.988	0/1:90:33,57:33:1184:57:2048:-157.498,0,-79.7756	0/0:131:131,0:131:4634:0:0:0,-39.4349,-417.228	0/0:116:116,0:116:4135:0:0:0,-34.9195,-372.335
chr11	19353657	.	C	T	1.0893e-11	PASS	AB=0.497625;ABP=3.17535;AC=40;AF=0.215054;AN=186;AO=1689;CIGAR=1X;DP=7702;DPB=7702;DPRA=1.11263;EPP=3524.45;EPPR=12403.9;GTI=38;LEN=1;MEANALT=1;MQM=11.1468;MQMR=45.5435;NS=93;NUMALT=1;ODDS=29.8025;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60450;QR=214038;RO=6011;RPL=1672;RPP=3524.45;RPPR=12565.3;RPR=17;RUN=1;SAF=0;SAP=3670.63;SAR=1689;SRF=19;SRP=12891.2;SRR=5992;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:885:0:0:0,-7.52575,-78.296	0/1:83:29,54:29:1040:54:1913:-33.0998,0,-67.936	0/0:135:135,0:135:4810:0:0:0,-40.639,-428.291	0/1:101:57,44:57:2044:44:1584:-13.3056,0,-151.283	0/0:37:37,0:37:1319:0:0:0,-11.1381,-116.884	0/0:22:22,0:22:788:0:0:0,-6.62266,-69.9887	0/0:90:90,0:90:3195:0:0:0,-27.0927,-283.888	0/0:115:115,0:115:4115:0:0:0,-34.6184,-366.499	0/1:64:27,37:27:968:37:1321:-17.7787,0,-67.1662	0/0:73:73,0:73:2592:0:0:0,-21.9752,-230.418	0/0:89:89,0:89:3148:0:0:0,-26.7917,-279.867	0/1:82:46,36:46:1611:36:1296:-11.2044,0,-116.836	0/1:70:33,37:33:1156:37:1328:-15.8038,0,-82.1422	0/0:105:105,0:105:3740:0:0:0,-31.6081,-331.656	0/1:58:28,30:28:1004:30:1080:-12.1359,0,-71.9658	0/0:63:63,0:63:2231:0:0:0,-18.9649,-198.932	0/0:88:88,0:88:3110:0:0:0,-26.4906,-277.01	0/1:73:44,29:44:1580:29:1040:-6.98959,0,-118.945	0/1:55:24,31:24:864:31:1112:-14.3857,0,-60.5948	0/1:166:75,91:75:2679:91:3272:-39.9439,0,-188.145	0/0:102:102,0:102:3593:0:0:0,-30.7051,-319.435	0/1:57:24,33:24:846:33:1173:-15.4818,0,-58.2884	0/1:75:34,41:34:1211:41:1472:-18.873,0,-85.1289	0/0:106:106,0:106:3783:0:0:0,-31.9092,-337.009	0/0:61:61,0:61:2153:0:0:0,-18.3628,-189.368	0/1:217:113,104:113:4022:104:3691:-37.2352,0,-291.718	0/0:209:208,0:208:7441:0:0:0,-62.6142,-662.046	0/0:45:45,0:45:1597:0:0:0,-13.5463,-142.521	0/0:222:222,0:222:7942:0:0:0,-66.8287,-704.853	0/1:43:27,16:27:963:16:576:-2.98741,0,-73.0372	0/0:67:67,0:67:2392:0:0:0,-20.169,-212.728	.:.:.:.:.:.:.:.	0/0:10:10,0:10:356:0:0:0,-3.0103,-31.8681	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.76137	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.8385	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1669	0/1:167:82,85:82:2923:85:3040:-35.5057,0,-208.621	0/1:108:55,53:55:1954:53:1904:-19.9168,0,-141.736	0/0:59:59,0:59:2104:0:0:0,-17.7608,-187.599	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.7459	0/1:106:63,43:63:2248:43:1548:-10.9017,0,-168.509	0/0:39:39,0:39:1400:0:0:0,-11.7402,-124.926	0/0:100:100,0:100:3542:0:0:0,-30.103,-315.646	0/0:86:86,0:86:3051:0:0:0,-25.8886,-271.226	0/0:69:69,0:69:2447:0:0:0,-20.7711,-217.429	0/1:87:37,50:37:1316:50:1780:-23.2624,0,-89.9774	0/1:114:60,54:60:2136:54:1910:-19.2315,0,-155.787	0/0:120:119,1:119:4217:1:36:0,-35.0249,-373.665	0/0:113:112,0:112:3985:0:0:0,-33.7154,-353.827	0/1:124:67,57:67:2392:57:2035:-19.3158,0,-175.394	0/0:73:73,0:73:2591:0:0:0,-21.9752,-230.154	0/1:6:4,2:4:144:2:72:-0.281421,0,-11.3233	0/0:126:126,0:126:4523:0:0:0,-37.9298,-402.714	0/0:48:47,1:47:1684:1:36:0,-13.3507,-148.63	0/1:5:2,3:2:72:3:108:-1.57132,0,-5.25622	0/0:150:150,0:150:5363:0:0:0,-45.1545,-477.395	0/1:29:15,14:15:540:14:496:-5.22065,0,-39.4801	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.93584	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1295	0/0:48:45,3:45:1604:3:108:0,-9.04007,-137.683	0/1:163:83,80:83:2939:80:2868:-29.6067,0,-212.191	1/1:2:0,2:0:0:2:72:-2.0876,-0.60206,0	0/1:93:55,38:55:1959:38:1368:-9.33087,0,-146.284	0/0:137:135,2:135:4815:2:72:0,-39.2482,-425.749	0/1:49:21,28:21:744:28:1004:-13.1359,0,-51.7952	0/0:85:85,0:85:3043:0:0:0,-25.5875,-270.111	0/1:134:59,75:59:2092:75:2692:-33.4837,0,-145.071	0/0:76:74,2:74:2656:2:72:0,-20.7907,-233.729	0/1:51:29,22:29:1036:22:792:-6.60248,0,-77.1615	0/0:80:79,1:79:2807:1:36:0,-22.9837,-249.15	0/0:112:112,0:112:4023:0:0:0,-33.7154,-357.287	0/1:20:6,14:6:216:14:500:-7.84118,0,-13.5511	0/0:82:82,0:82:2917:0:0:0,-24.6845,-259.958	0/0:72:72,0:72:2554:0:0:0,-21.6742,-227.733	0/0:136:135,1:135:4785:1:36:0,-39.8413,-425.278	0/1:161:80,81:80:2835:81:2899:-31.7307,0,-203.525	0/0:43:43,0:43:1536:0:0:0,-12.9443,-136.062	0/1:112:56,56:56:1996:56:2012:-22.0387,0,-144.282	0/1:3:1,2:1:36:2:72:-1.18451,0,-2.64543	0/1:106:62,44:62:2211:44:1572:-11.8856,0,-165.104	0/0:100:100,0:100:3558:0:0:0,-30.103,-316.683	0/0:170:170,0:170:6059:0:0:0,-51.1751,-537.979	0/1:86:51,35:51:1836:35:1260:-8.83146,0,-137.325	0/0:94:94,0:94:3346:0:0:0,-28.2968,-297.343	0/0:91:91,0:91:3223:0:0:0,-27.3937,-285.432	0/1:154:83,71:83:2930:71:2540:-23.3244,0,-213.243	0/0:53:53,0:53:1879:0:0:0,-15.9546,-165.21	0/1:85:47,38:47:1676:38:1364:-14.6234,0,-123.948	0/1:88:42,46:42:1485:46:1644:-19.4609,0,-105.989	0/0:56:56,0:56:2007:0:0:0,-16.8577,-176.67	0/1:109:48,61:48:1698:61:2176:-27.8788,0,-118.622	0/1:64:23,41:23:811:41:1468:-21.4737,0,-53.1925	0/0:97:97,0:97:3468:0:0:0,-29.1999,-308.074	0/0:125:125,0:125:4453:0:0:0,-37.6287,-395.668
chr11	19354480	.	G	A	6484.72	PASS	AB=0.513974;ABP=8.29005;AC=39;AF=0.207447;AN=188;AO=1606;CIGAR=1X;DP=7035;DPB=7035;DPRA=1.22653;EPP=3490.39;EPPR=11778.9;GTI=0;LEN=1;MEANALT=1.04762;MQM=21.655;MQMR=35.6365;NS=94;NUMALT=1;ODDS=0.0301877;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57607;QR=193440;RO=5423;RPL=0;RPP=3490.39;RPPR=11778.9;RPR=1606;RUN=1;SAF=1606;SAP=3490.39;SAR=0;SRF=5423;SRP=11778.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1089:0:0:0,-9.33193,-90.7802	0/1:111:53,58:53:1885:58:2088:-79.9767,0,-123.194	0/0:84:84,0:84:2994:0:0:0,-25.2865,-249.287	0/1:204:97,106:97:3465:106:3804:-146.225,0,-221.672	0/0:86:86,0:86:3092:0:0:0,-25.8886,-252.274	0/0:59:59,0:59:2120:0:0:0,-17.7608,-173.661	0/0:129:129,0:129:4568:0:0:0,-38.8329,-375.076	0/0:145:144,1:144:5127:1:36:0,-41.4662,-424.16	0/1:83:43,40:43:1506:40:1440:-52.6796,0,-101.091	0/0:104:103,0:103:3654:0:0:0,-31.0061,-298.152	0/0:11:11,0:11:396:0:0:0,-3.31133,-32.889	0/1:25:15,10:15:540:10:360:-12.253,0,-37.9818	0/1:33:20,13:20:716:13:468:-15.8272,0,-49.4947	0/0:21:21,0:21:752:0:0:0,-6.32163,-60.6739	0/1:28:10,18:10:360:18:648:-26.1794,0,-21.2317	0/0:21:21,0:21:752:0:0:0,-6.32163,-62.001	0/0:18:18,0:18:633:0:0:0,-5.41854,-51.4536	0/1:22:8,14:8:288:14:504:-21.2904,0,-17.4708	0/1:6:2,4:2:72:4:144:-6.27148,0,-4.20437	0/1:235:121,114:121:4287:114:4096:-155.566,0,-281.032	0/0:113:113,0:113:4038:0:0:0,-34.0164,-331.427	0/1:156:50,106:50:1800:106:3793:-150.399,0,-98.7279	0/1:83:46,37:46:1641:37:1332:-45.7204,0,-107.022	0/0:92:92,0:92:3300:0:0:0,-27.6948,-269.629	0/0:67:67,0:67:2400:0:0:0,-20.169,-196.704	0/1:259:135,124:135:4844:124:4456:-153.548,0,-312.956	0/0:156:156,0:156:5570:0:0:0,-46.9607,-456.8	0/0:16:16,0:16:576:0:0:0,-4.81648,-47.5194	0/0:273:272,0:272:9757:0:0:0,-81.8802,-788.555	0/1:55:31,24:31:1097:24:864:-30.197,0,-73.0489	0/0:95:95,0:95:3401:0:0:0,-28.5978,-280.825	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.26815	0/0:21:21,0:21:752:0:0:0,-6.32163,-62.2391	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.4038	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.4079	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.4038	0/1:72:36,36:36:1292:36:1296:-46.1392,0,-83.6727	0/1:159:86,73:86:3058:73:2620:-94.5144,0,-202.91	0/0:20:20,0:20:720:0:0:0,-6.0206,-60.4748	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.26815	0/1:95:39,56:39:1366:56:2012:-80.3867,0,-84.4665	0/0:12:12,0:12:432:0:0:0,-3.61236,-35.5994	0/0:192:191,0:191:6807:0:0:0,-57.4967,-557.601	0/0:22:22,0:22:788:0:0:0,-6.62266,-63.9957	0/0:30:30,0:30:1057:0:0:0,-9.0309,-83.4222	0/1:99:53,46:53:1889:46:1637:-55.6194,0,-122.849	0/1:147:69,78:69:2472:78:2804:-108.667,0,-160.503	0/0:167:167,0:167:5954:0:0:0,-50.272,-488.097	0/0:116:116,0:116:4137:0:0:0,-34.9195,-338.209	0/1:115:57,58:57:2012:58:2084:-77.7672,0,-130.269	0/0:155:155,0:155:5511:0:0:0,-46.6596,-444.796	0/1:12:8,4:8:288:4:144:-4.4653,0,-20.4705	0/0:94:94,0:94:3330:0:0:0,-28.2968,-278.58	0/0:45:45,0:45:1604:0:0:0,-13.5463,-129.551	0/1:7:2,5:2:72:5:180:-7.93528,0,-4.25047	0/0:88:88,0:88:3118:0:0:0,-26.4906,-255.625	0/1:42:22,20:22:792:20:720:-26.8718,0,-51.7964	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.7111	0/0:11:11,0:11:392:0:0:0,-3.31133,-32.0415	0/0:71:71,0:71:2510:0:0:0,-21.3731,-206.901	0/1:61:27,34:27:964:34:1205:-48.3723,0,-60.5604	0/1:10:7,3:7:252:3:108:-3.10252,0,-18.1035	0/1:180:77,103:77:2734:103:3666:-140.311,0,-162.506	0/0:149:147,1:147:5211:1:36:0,-42.5876,-427.315	0/1:46:27,19:27:964:19:684:-23.7028,0,-64.6533	0/0:83:83,0:83:2972:0:0:0,-24.9855,-242.22	0/1:163:86,77:86:3065:77:2753:-101.699,0,-201.034	0/0:94:90,4:90:3224:4:144:0,-20.2192,-257.908	0/1:2:1,1:1:36:1:36:-1.48452,0,-2.69696	0/0:67:67,0:67:2404:0:0:0,-20.169,-197.728	0/0:43:43,0:43:1548:0:0:0,-12.9443,-124.806	0/1:19:11,8:11:396:8:288:-10.2174,0,-25.5419	0/0:95:95,0:95:3332:0:0:0,-28.5978,-279.422	0/0:32:32,0:32:1144:0:0:0,-9.63296,-94.9989	0/0:108:108,0:108:3873:0:0:0,-32.5112,-315.731	0/1:171:104,67:104:3702:67:2408:-77.9924,0,-249.638	0/0:162:162,0:162:5796:0:0:0,-48.7669,-481.854	0/1:72:38,34:38:1364:34:1201:-44.0653,0,-92.8591	0/1:12:6,6:6:216:6:216:-8.39497,0,-14.7914	0/1:95:41,54:41:1472:54:1936:-76.0932,0,-90.1371	0/0:116:115,0:115:4124:0:0:0,-34.6184,-343.515	0/0:229:229,0:229:8192:0:0:0,-68.9359,-667.236	0/1:64:24,40:24:864:40:1440:-60.7872,0,-51.7348	0/0:27:27,0:27:953:0:0:0,-8.12781,-78.8205	0/0:30:30,0:30:1076:0:0:0,-9.0309,-88.9814	0/1:49:24,25:24:856:25:900:-34.4135,0,-56.038	0/0:31:31,0:31:1112:0:0:0,-9.33193,-93.4898	0/1:40:12,28:12:417:28:1008:-42.4825,0,-23.1085	0/1:28:7,21:7:248:21:752:-32.7663,0,-11.6805	0/0:13:13,0:13:464:0:0:0,-3.91339,-38.0346	0/1:15:6,9:6:216:9:324:-13.3864,0,-13.7156	0/1:38:11,27:11:396:27:972:-40.5895,0,-21.5304	0/0:23:23,0:23:816:0:0:0,-6.92369,-67.7799	0/0:32:32,0:32:1136:0:0:0,-9.63296,-93.3261
chr11	19354679	.	C	A	699920	PASS	AB=0.527282;ABP=54.0769;AC=154;AF=0.819149;AN=188;AO=26279;CIGAR=1X;DP=30106;DPB=30106;DPRA=0;EPP=15759.9;EPPR=164.967;GTI=1;LEN=1;MEANALT=1.18085;MQM=52.8671;MQMR=59.691;NS=94;NUMALT=1;ODDS=16.2676;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=938123;QR=135642;RO=3809;RPL=17;RPP=56919.6;RPPR=8178.88;RPR=26262;RUN=1;SAF=20061;SAP=15837.6;SAR=6218;SRF=2182;SRP=178.612;SRR=1627;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:165:0,165:0:0:165:5904:-530.222,-49.67,0	0/1:320:153,167:153:5471:167:5968:-437.739,0,-395.317	1/1:293:0,293:0:0:293:10472:-936.851,-88.2018,0	0/1:464:222,242:222:7906:242:8623:-634.797,0,-571.248	1/1:147:0,147:0:0:147:5267:-473.185,-44.2514,0	1/1:47:0,47:0:0:47:1680:-151.224,-14.1484,0	1/1:290:0,290:0:0:290:10343:-928.764,-87.2987,0	1/1:287:0,287:0:0:287:10191:-910.147,-86.3956,0	0/1:224:113,111:113:4026:111:3963:-288.092,0,-295.072	1/1:163:0,163:0:0:163:5805:-521.371,-49.0679,0	1/1:511:0,511:0:0:511:18242:-1634.37,-153.826,0	0/1:148:79,69:79:2828:69:2472:-176.951,0,-209.949	0/1:151:79,72:79:2824:72:2576:-186.029,0,-208.885	1/1:115:0,115:0:0:115:4124:-370.178,-34.6185,0	0/1:124:56,68:56:2000:68:2431:-181.194,0,-142.941	1/1:128:0,128:0:0:128:4596:-412.44,-38.5318,0	1/1:136:0,136:0:0:136:4851:-434.093,-40.9401,0	0/1:117:62,55:62:2224:55:1964:-139.482,0,-165.168	0/1:153:40,113:40:1436:113:4048:-315.51,0,-83.4625	0/1:410:197,213:197:6979:213:7571:-556.592,0,-504.693	1/1:259:0,259:0:0:259:9226:-827.601,-77.9668,0	0/1:121:77,44:77:2740:44:1576:-105.625,0,-210.419	0/1:145:69,76:69:2456:76:2702:-199.495,0,-177.646	1/1:226:0,226:0:0:226:8069:-724.731,-68.0328,0	1/1:231:1,230:1:36:230:8199:-732.375,-65.9397,0	0/1:493:240,253:240:8515:253:9042:-663.764,0,-617.904	1/1:497:0,497:0:0:497:17764:-1593.13,-149.612,0	1/1:59:0,59:0:0:59:2120:-190.615,-17.7608,0	1/1:567:1,565:1:36:565:20172:-1808.17,-167.125,0	0/1:193:106,87:106:3750:87:3112:-220.954,0,-279.405	1/1:208:0,208:0:0:208:7433:-667.807,-62.6142,0	1/1:640:5,633:5:180:633:22590:-2004.45,-175.864,0	1/1:823:0,823:0:0:823:29372:-2628.76,-247.748,0	1/1:1576:0,1575:0:0:1575:56230:-5006.83,-474.122,0	1/1:2385:2,2381:2:72:2381:84984:-7563.55,-710.877,0	1/1:962:1,961:1:36:961:34271:-3052.27,-285.993,0	0/1:358:190,168:190:6780:168:5977:-429.191,0,-502.487	0/1:166:71,95:71:2540:95:3396:-254.566,0,-178.839	1/1:460:0,459:0:0:459:16441:-1464.75,-138.173,0	1/1:957:0,955:0:0:955:34071:-3044.77,-287.484,0	0/1:295:138,156:138:4952:156:5587:-412.234,0,-356.94	1/1:255:1,254:1:36:254:9087:-809.897,-73.1644,0	1/1:333:0,332:0:0:332:11832:-1060.8,-99.942,0	1/1:117:0,116:0:0:116:4151:-372.364,-34.9195,0	1/1:107:0,107:0:0:107:3782:-339.597,-32.2102,0	0/1:166:85,81:85:3048:81:2882:-209.517,0,-224.533	0/1:178:84,94:84:2971:94:3357:-246.461,0,-213.799	1/1:344:0,344:0:0:344:12307:-1104.91,-103.554,0	1/1:158:0,158:0:0:158:5631:-505.5,-47.5627,0	0/1:303:154,149:154:5451:149:5336:-388.253,0,-399.486	1/1:296:0,296:0:0:296:10539:-946.194,-89.1049,0	1/1:714:4,710:4:144:710:25359:-2261.74,-201.622,0	1/1:289:0,289:0:0:289:10332:-923.172,-86.9977,0	1/1:79:0,79:0:0:79:2824:-254.209,-23.7814,0	1/1:281:8,273:8:288:273:9718:-839.668,-58.3398,0	1/1:310:0,310:0:0:310:11031:-989.269,-93.3193,0	0/1:94:34,60:34:1220:60:2143:-164.563,0,-81.8084	1/1:851:1,850:1:36:850:30315:-2716.14,-252.578,0	1/1:872:0,872:0:0:872:31127:-2790.13,-262.498,0	1/1:121:0,121:0:0:121:4336:-389.426,-36.4246,0	0/1:162:84,77:84:3007:77:2747:-197.342,0,-222.007	1/1:362:15,347:15:540:347:12371:-1060.15,-60.0363,0	0/1:230:135,95:135:4789:95:3395:-236.104,0,-361.174	1/1:316:2,313:2:72:313:11198:-997.554,-88.3472,0	0/1:119:71,48:71:2527:48:1720:-117.688,0,-190.661	1/1:193:0,193:0:0:193:6908:-620.428,-58.0988,0	0/1:363:172,191:172:6112:191:6780:-499.707,0,-440.766	1/1:128:4,124:4:144:124:4436:-385.276,-25.2182,0	0/1:254:31,223:31:1108:223:7975:-636.535,0,-23.5612	1/1:94:0,94:0:0:94:3364:-301.666,-28.2968,0	1/1:134:0,134:0:0:134:4799:-430.541,-40.338,0	1/1:429:18,411:18:622:411:14639:-1255.49,-72.8417,0	1/1:203:0,203:0:0:203:7252:-651.094,-61.1091,0	1/1:150:0,150:0:0:150:5359:-481.114,-45.1545,0	1/1:280:0,280:0:0:280:9985:-897,-84.2884,0	0/1:359:196,163:196:6931:163:5834:-416.077,0,-514.754	1/1:163:0,163:0:0:163:5812:-521.375,-49.0679,0	0/1:249:136,112:136:4834:112:3985:-281.236,0,-360.107	1/1:742:15,726:15:532:726:25973:-2270.44,-175.208,0	0/1:299:150,149:150:5328:149:5308:-386.033,0,-389.623	1/1:264:0,264:0:0:264:9434:-843.048,-79.4719,0	1/1:406:0,405:0:0:405:14486:-1298.4,-121.917,0	0/1:136:64,72:64:2292:72:2560:-187.613,0,-165.597	1/1:129:0,129:0:0:129:4607:-414.092,-38.8329,0	1/1:176:0,176:0:0:176:6288:-563.957,-52.9813,0	0/1:243:139,104:139:4959:104:3701:-259.654,0,-373.29	1/1:53:0,52:0:0:52:1862:-166.167,-15.6536,0	0/1:126:67,59:67:2396:59:2116:-152.149,0,-177.931	0/1:128:59,69:59:2108:69:2456:-182.041,0,-151.246	1/1:520:0,520:0:0:520:18550:-1659.38,-156.536,0	0/1:455:68,387:68:2428:387:13835:-1102.41,0,-81.8073	0/1:153:110,43:110:3932:43:1532:-91.542,0,-307.992	1/1:21:0,21:0:0:21:748:-67.6314,-6.32163,0	1/1:185:0,1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chr11	19354736	.	A	G	140634	PASS	AB=0.501052;ABP=3.04228;AC=149;AF=0.792553;AN=188;AO=6522;CIGAR=1X;DP=8187;DPB=8187;DPRA=0;EPP=14165.4;EPPR=3614.17;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.3203;MQMR=59.9272;NS=94;NUMALT=1;ODDS=0.228524;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233541;QR=59496;RO=1663;RPL=6522;RPP=14165.4;RPPR=3614.17;RPR=0;RUN=1;SAF=0;SAP=14165.4;SAR=6522;SRF=0;SRP=3614.17;SRR=1663;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:140:0,140:0:0:140:5000:-449.791,-42.1442,0	0/1:68:29,39:29:1044:39:1377:-103.738,0,-73.8048	1/1:114:0,114:0:0:114:4083:-367.61,-34.3174,0	0/1:247:115,132:115:4101:132:4727:-351.08,0,-294.849	1/1:83:0,83:0:0:83:2973:-267.773,-24.9855,0	1/1:32:0,32:0:0:32:1148:-103.616,-9.63296,0	1/1:161:0,161:0:0:161:5764:-518.517,-48.4658,0	1/1:132:0,132:0:0:132:4724:-425.083,-39.736,0	0/1:145:78,67:78:2781:67:2399:-172.447,0,-206.88	1/1:57:0,57:0:0:57:2048:-184.51,-17.1587,0	1/1:31:0,31:0:0:31:1097:-98.9812,-9.33193,0	0/1:84:40,43:40:1420:43:1548:-114.281,0,-102.898	0/1:82:42,40:42:1504:40:1431:-104.367,0,-110.97	1/1:37:0,37:0:0:37:1328:-119.821,-11.1381,0	0/1:63:28,35:28:1008:35:1256:-94.3804,0,-72.0715	1/1:49:0,49:0:0:49:1748:-157.542,-14.7505,0	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	0/1:44:30,14:30:1076:14:495:-31.6191,0,-83.9075	0/1:32:18,14:18:640:14:500:-35.6678,0,-48.2964	0/1:210:92,118:92:3300:118:4232:-317.757,0,-234.002	1/1:152:0,152:0:0:152:5452:-490.716,-45.7566,0	0/1:66:39,27:39:1388:27:968:-67.5303,0,-105.351	0/1:102:45,56:45:1596:56:2012:-150.473,0,-113.163	1/1:118:0,118:0:0:118:4248:-382.429,-35.5215,0	1/1:161:0,161:0:0:161:5768:-519.057,-48.4658,0	0/1:199:104,95:104:3720:95:3393:-245.065,0,-275.097	1/1:286:0,286:0:0:286:10236:-921.036,-86.0946,0	1/1:37:0,37:0:0:37:1332:-120.13,-11.1381,0	1/1:291:1,290:1:36:290:10377:-929.827,-84.0015,0	0/1:54:28,26:28:996:26:917:-66.5662,0,-73.6993	1/1:115:0,115:0:0:115:4108:-369.609,-34.6185,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:17:0,17:0:0:17:608:-55.0474,-5.11751,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:183:96,87:96:3448:87:3119:-225.299,0,-254.422	0/1:44:19,25:19:684:25:900:-68.0757,0,-48.645	1/1:37:0,37:0:0:37:1319:-118.723,-11.1381,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:135:56,79:56:1996:79:2828:-214.094,0,-139.275	1/1:33:0,33:0:0:33:1184:-106.833,-9.93399,0	1/1:223:0,223:0:0:223:7971:-716.444,-67.1297,0	1/1:36:0,36:0:0:36:1288:-116.193,-10.8371,0	1/1:59:0,59:0:0:59:2120:-190.78,-17.7608,0	0/1:126:67,59:67:2389:59:2112:-152.352,0,-177.335	0/1:83:42,41:42:1500:41:1476:-108.151,0,-110.298	1/1:168:0,168:0:0:168:6023:-541.887,-50.573,0	1/1:81:0,81:0:0:81:2904:-261.482,-24.3834,0	0/1:88:43,45:43:1536:45:1616:-119.239,0,-112.042	1/1:131:0,131:0:0:131:4716:-424.195,-39.4349,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:123:0,123:0:0:123:4400:-395.892,-37.0267,0	1/1:49:0,49:0:0:49:1760:-158.655,-14.7505,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:169:0,169:0:0:169:6044:-543.732,-50.8741,0	0/1:59:21,38:21:752:38:1368:-105.61,0,-50.2455	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:92:0,92:0:0:92:3289:-296.105,-27.6948,0	0/1:73:35,38:35:1256:38:1356:-100.325,0,-91.3701	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:106:55,51:55:1964:51:1818:-131.868,0,-145.126	1/1:123:1,122:1:36:122:4349:-387.776,-33.4284,0	0/1:43:21,22:21:756:22:792:-58.6365,0,-55.4229	1/1:91:0,91:0:0:91:3262:-293.457,-27.3937,0	0/1:95:48,47:48:1720:47:1684:-123.166,0,-126.488	1/1:86:3,83:3:108:83:2969:-256.958,-15.8134,0	0/1:27:17,10:17:612:10:360:-24.6118,0,-47.2856	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:36:0,36:0:0:36:1288:-115.457,-10.8371,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	1/1:170:0,170:0:0:170:6074:-546.534,-51.1751,0	1/1:91:0,91:0:0:91:3268:-294.332,-27.3937,0	1/1:221:0,221:0:0:221:7909:-711.776,-66.5276,0	0/1:175:106,69:106:3808:69:2480:-170.713,0,-289.535	1/1:111:0,111:0:0:111:3987:-358.739,-33.4143,0	0/1:85:37,48:37:1332:48:1724:-129.857,0,-94.5948	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/1:133:59,74:59:2120:74:2664:-199.887,0,-151.031	1/1:111:0,111:0:0:111:3984:-358.626,-33.4143,0	1/1:206:0,206:0:0:206:7376:-662.412,-62.0122,0	0/1:61:23,38:23:828:38:1364:-104.527,0,-56.4813	1/1:68:0,68:0:0:68:2435:-219.28,-20.47,0	1/1:48:0,48:0:0:48:1728:-155.373,-14.4494,0	0/1:117:68,49:68:2427:49:1745:-122.021,0,-183.465	1/1:18:0,18:0:0:18:639:-57.8188,-5.41854,0	0/1:56:28,28:28:991:28:1006:-73.9688,0,-72.6458	0/1:57:24,33:24:851:33:1176:-88.9467,0,-59.7507	1/1:29:0,29:0:0:29:1030:-92.9881,-8.72987,0	0/1:62:24,38:24:860:38:1352:-103.313,0,-59.058	0/1:70:55,15:55:1976:15:532:-27.1125,0,-157.043	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:118:0,118:0:0:118:4240:-381.681,-35.5215,0
chr11	19358793	.	C	T	72198.4	PASS	AB=0.479522;ABP=27.3788;AC=34;AF=0.180851;AN=188;AO=3278;CIGAR=1X;DP=21562;DPB=21562;DPRA=1.43965;EPP=7121.1;EPPR=39667.1;GTI=0;LEN=1;MEANALT=1.08333;MQM=59.9924;MQMR=59.9931;NS=94;NUMALT=1;ODDS=61.3574;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116765;QR=646813;RO=18278;RPL=1690;RPP=9.90231;RPPR=7105.48;RPR=1588;RUN=1;SAF=1690;SAP=9.90231;SAR=1588;SRF=13006;SRP=7109.15;SRR=5272;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:89:89,0:89:3143:0:0:0,-26.7917,-283.093	0/1:265:107,158:107:3822:158:5637:-427.676,0,-264.403	0/0:163:161,2:161:5703:2:72:0,-42.2312,-506.553	0/1:283:142,141:142:5041:141:5039:-368.463,0,-368.647	0/0:79:79,0:79:2808:0:0:0,-23.7814,-252.958	0/0:82:82,0:82:2911:0:0:0,-24.6845,-262.226	0/0:232:231,1:231:8127:1:36:0,-66.2407,-727.857	0/0:235:235,0:235:8299:0:0:0,-70.742,-746.927	0/1:159:67,92:67:2378:92:3296:-248.995,0,-166.413	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/0:506:505,1:505:17710:1:36:0,-148.723,-1589.93	0/1:167:80,87:80:2789:87:3071:-226.346,0,-200.981	0/1:141:61,80:61:2143:80:2843:-213.665,0,-150.69	0/0:153:153,0:153:5355:0:0:0,-46.0576,-482.087	0/1:143:60,83:60:2092:83:2961:-223.675,0,-145.501	0/0:131:131,0:131:4614:0:0:0,-39.4349,-415.428	0/0:157:156,1:156:5455:1:36:0,-43.6634,-487.415	0/1:192:94,98:94:3321:98:3487:-256.242,0,-241.312	0/1:226:177,49:177:6241:49:1743:-89.1209,0,-493.755	0/1:219:109,110:109:3865:110:3936:-288.507,0,-282.119	0/0:244:244,0:244:8666:0:0:0,-73.4513,-779.939	0/1:73:16,57:16:568:57:2039:-161.806,0,-29.4767	0/1:110:59,51:59:2096:51:1824:-131.328,0,-155.797	0/0:171:171,0:171:6078:0:0:0,-51.4761,-547.124	0/0:104:103,1:103:3611:1:36:0,-27.7088,-321.601	0/1:353:144,209:144:5075:209:7491:-567.967,0,-350.634	0/0:247:246,1:246:8666:1:36:0,-70.7561,-776.321	0/0:66:66,0:66:2334:0:0:0,-19.868,-210.319	0/0:273:273,0:273:9648:0:0:0,-82.1812,-868.283	0/1:152:70,82:70:2491:82:2917:-217.009,0,-178.686	0/0:171:171,0:171:6048:0:0:0,-51.4761,-544.428	0/0:247:245,2:245:8665:2:72:0,-67.5177,-773.017	0/0:756:754,1:754:26908:1:36:0,-224.039,-2417.35	0/0:378:377,1:377:13430:1:36:0,-110.191,-1204.9	0/0:786:784,2:784:27819:2:72:0,-229.773,-2496.08	0/0:978:977,1:977:34702:1:36:0,-290.809,-3118.5	0/1:344:136,208:136:4769:208:7435:-565.642,0,-325.814	0/1:131:69,62:69:2423:62:2205:-159.279,0,-178.89	0/0:515:515,0:515:18114:0:0:0,-155.03,-1629.88	0/0:448:448,0:448:15985:0:0:0,-134.861,-1438.34	0/1:228:124,104:124:4400:104:3689:-263.578,0,-327.54	0/0:267:267,0:267:9428:0:0:0,-80.375,-848.487	0/0:126:126,0:126:4478:0:0:0,-37.9298,-403.189	0/0:178:178,0:178:6248:0:0:0,-53.5833,-562.426	0/0:140:140,0:140:4890:0:0:0,-42.1442,-440.26	0/1:117:54,63:54:1888:63:2255:-167.993,0,-134.975	0/1:149:74,75:74:2648:75:2671:-195.782,0,-193.713	0/0:189:185,3:185:6570:3:108:0,-46.8783,-581.309	0/0:136:136,0:136:4865:0:0:0,-40.9401,-438.002	0/1:223:111,112:111:3928:112:3994:-292.52,0,-286.585	0/0:211:211,0:211:7491:0:0:0,-63.5173,-674.238	0/0:349:346,3:346:12281:3:108:0,-94.9843,-1095.06	0/0:134:133,1:133:4743:1:36:0,-36.7397,-423.431	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433	0/0:216:206,10:206:7299:10:351:0,-33.0958,-625.036	0/0:166:166,0:166:5927:0:0:0,-49.971,-533.538	0/1:66:39,27:39:1369:27:953:-66.2167,0,-103.638	0/0:505:505,0:505:17911:0:0:0,-152.02,-1611.61	0/0:550:549,1:549:19514:1:36:0,-161.968,-1752.21	0/0:146:146,0:146:5181:0:0:0,-43.9504,-466.408	0/1:194:69,125:69:2407:125:4467:-343.8,0,-158.467	0/0:153:151,2:151:5392:2:72:0,-39.2209,-478.576	0/1:143:66,77:66:2338:77:2743:-204.065,0,-167.632	0/0:254:246,8:246:8787:8:280:0,-50.9223,-765.278	0/1:115:58,56:58:2054:56:1986:-144.337,0,-150.453	0/0:94:93,1:93:3253:1:32:0,-25.0975,-289.79	0/1:196:98,98:98:3459:98:3516:-257.647,0,-252.521	0/0:146:144,2:144:5134:2:57:0,-38.5371,-456.79	0/1:323:276,47:276:9841:47:1637:-50.3831,0,-788.405	0/0:120:120,0:120:4167:0:0:0,-36.1236,-375.215	0/0:195:195,0:195:6898:0:0:0,-58.7008,-620.895	0/0:337:324,13:324:11517:13:464:0,-59.3496,-994.314	0/0:82:82,0:82:2892:0:0:0,-24.6845,-260.516	0/0:68:68,0:68:2343:0:0:0,-20.47,-211.125	0/0:260:260,0:260:9158:0:0:0,-78.2678,-824.206	0/1:202:101,101:101:3599:101:3603:-263.669,0,-263.309	0/0:153:152,1:152:5371:1:36:0,-42.4593,-479.926	0/1:230:108,122:108:3794:122:4338:-321.36,0,-272.422	0/0:363:354,8:354:12560:8:284:0,-83.4288,-1104.33	0/1:175:78,97:78:2755:97:3437:-256.862,0,-195.51	0/0:176:175,0:175:6177:0:0:0,-52.6802,-555.821	0/0:307:306,1:306:10870:1:36:0,-88.8179,-974.609	0/1:191:88,103:88:3090:103:3677:-273.635,0,-220.834	0/0:138:137,1:137:4808:1:36:0,-37.9439,-429.286	0/0:182:182,0:182:6389:0:0:0,-54.7875,-575.106	0/1:262:136,126:136:4719:126:4458:-322.52,0,-346.005	0/0:95:95,0:95:3350:0:0:0,-28.5978,-301.72	0/1:148:67,81:67:2348:81:2895:-216.233,0,-167.026	0/1:139:71,68:71:2514:68:2414:-175.673,0,-184.669	0/0:845:843,1:843:29875:1:36:0,-250.831,-2684.19	0/1:497:428,69:428:15046:69:2439:-70.1401,0,-1204.27	0/1:134:44,90:44:1554:90:3193:-247.256,0,-99.8122	0/0:94:94,0:94:3333:0:0:0,-28.2968,-300.188	0/0:177:177,0:177:6160:0:0:0,-53.2823,-554.514
chr11	19358811	.	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chr11	19374765	.	C	T	27449.3	PASS	AB=0.50736;ABP=4.51258;AC=40;AF=0.212766;AN=188;AO=1626;CIGAR=1X;DP=6993;DPB=6993;DPRA=1.32538;EPP=3533.82;EPPR=11655.1;GTI=1;LEN=1;MEANALT=1;MQM=59.9754;MQMR=59.9767;NS=94;NUMALT=1;ODDS=0.304222;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58250;QR=192128;RO=5366;RPL=0;RPP=3533.82;RPPR=11655.1;RPR=1626;RUN=1;SAF=1626;SAP=3533.82;SAR=0;SRF=5366;SRP=11655.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/1:113:49,64:49:1748:64:2296:-172.885,0,-123.588	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.189	0/1:116:62,54:62:2212:54:1944:-140.317,0,-164.426	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:87:87,0:87:3101:0:0:0,-26.1896,-279.308	0/1:34:20,14:20:716:14:504:-35.4454,0,-54.5327	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:46:16,30:16:568:30:1066:-82.4022,0,-37.6045	0/1:61:30,31:30:1071:31:1097:-80.6752,0,-78.3388	0/0:114:114,0:114:4071:0:0:0,-34.3174,-366.577	0/1:49:25,24:25:900:24:864:-63.3321,0,-66.5705	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:104:103,1:103:3704:1:36:0,-27.7088,-329.962	0/1:63:25,38:25:896:38:1364:-104.096,0,-61.9955	0/1:35:21,14:21:756:14:504:-35.162,0,-57.8312	0/1:90:53,37:53:1892:37:1332:-93.0897,0,-143.466	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.925	0/1:278:86,192:86:3068:192:6878:-535.402,0,-192.534	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:226:123,103:123:4416:103:3681:-263.459,0,-329.578	0/0:89:89,0:89:3173:0:0:0,-26.7917,-285.793	0/0:24:23,1:23:828:1:36:0,-3.62644,-71.2458	0/0:242:241,1:241:8636:1:36:0,-69.251,-773.635	0/1:131:72,59:72:2584:59:2115:-151.178,0,-193.374	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:141:69,72:69:2475:72:2574:-189.465,0,-180.558	0/1:183:85,98:85:3056:98:3524:-262.28,0,-220.135	0/0:62:62,0:62:2214:0:0:0,-18.6639,-199.523	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:92:54,38:54:1940:38:1360:-95.0058,0,-147.181	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:79:79,0:79:2813:0:0:0,-23.7814,-253.408	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/1:34:20,14:20:712:14:504:-35.4631,0,-54.1716	0/1:56:28,28:28:1008:28:1000:-73.4577,0,-74.1705	0/0:108:108,0:108:3852:0:0:0,-32.5112,-346.877	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/1:121:59,62:59:2108:62:2224:-164,0,-153.565	0/0:140:140,0:140:4997:0:0:0,-42.1442,-449.877	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/1:17:9,8:9:324:8:284:-20.7858,0,-24.3883	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:166:68,98:68:2440:98:3528:-267.756,0,-169.883	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:120:78,42:78:2796:42:1512:-100.251,0,-215.756	0/0:199:197,2:197:7064:2:72:0,-53.0682,-628.976	0/1:74:38,36:38:1360:36:1278:-93.0448,0,-100.424	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:81:33,48:33:1184:48:1724:-131.062,0,-82.4849	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:37:22,15:22:792:15:540:-37.7984,0,-60.4676	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/1:15:5,10:5:180:10:360:-28.2289,0,-12.0366	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.517	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/1:96:43,53:43:1548:53:1892:-141.659,0,-110.714	0/0:119:118,0:118:4228:0:0:0,-35.5215,-380.34	0/1:44:26,18:26:928:18:648:-45.4066,0,-70.5929	0/1:18:10,8:10:356:8:284:-20.4848,0,-26.9627	0/1:91:42,49:42:1500:49:1756:-130.93,0,-107.123	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:154:154,0:154:5532:0:0:0,-46.3586,-498.003	0/1:94:52,42:52:1860:42:1497:-106.726,0,-139.383	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:57:57,0:57:2017:0:0:0,-17.1587,-181.801	0/1:116:60,56:60:2135:56:1997:-145.082,0,-157.481	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:51:26,25:26:932:25:900:-65.9685,0,-68.8463	0/1:54:29,25:29:1040:25:889:-64.0724,0,-77.6587	0/0:94:94,0:94:3358:0:0:0,-28.2968,-302.431	0/1:139:83,56:83:2967:56:2003:-138.7,0,-225.419	0/1:50:17,33:17:591:33:1179:-91.3657,0,-38.4638	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:77:76,1:76:2728:1:36:0,-19.581,-242.164
chr11	19374786	.	CTC	CTT	111996	PASS	AB=0.478828;ABP=15.2393;AC=148;AF=0.787234;AN=188;AO=5180;CIGAR=2M1X;DP=6830;DPB=6831.67;DPRA=0;EPP=10787.1;EPPR=3383.95;GTI=1;LEN=1;MEANALT=1.1383;MQM=59.9801;MQMR=59.9756;NS=94;NUMALT=1;ODDS=1.11902;PAIRED=0;PAIREDR=0;PAO=1;PQA=35;PQR=35;PRO=1;QA=184722;QR=58027;RO=1636;RPL=54;RPP=10787.1;RPPR=3383.95;RPR=5126;RUN=1;SAF=5180;SAP=11251.2;SAR=0;SRF=1636;SRP=3555.54;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:112:64,48:64:2283:48:1728:-122.09,0,-172.016	1/1:102:0,102:0:0:102:3652:-328.884,-30.7051,0	0/1:110:54,56:54:1899:56:2001:-147.249,0,-138.072	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:34:0,34:0:0:34:1182:-106.681,-10.235,0	1/1:76:0,76:0:0:76:2706:-243.785,-22.8783,0	1/1:85:0,85:0:0:85:3018:-271.843,-25.5876,0	0/1:33:14,19:14:488:19:684:-51.9563,0,-34.3124	1/1:84:0,84:0:0:84:2994:-269.69,-25.2865,0	1/1:73:0,72:0:0:72:2570:-231.189,-21.6742,0	0/1:45:30,15:30:1061:15:540:-35.3902,0,-82.2525	0/1:61:32,29:32:1141:29:1040:-75.4934,0,-84.5777	1/1:112:0,112:0:0:112:3979:-358.301,-33.7154,0	0/1:49:24,25:24:852:25:892:-65.8492,0,-62.2496	1/1:58:0,58:0:0:58:2049:-184.68,-17.4597,0	1/1:101:0,101:0:0:101:3608:-324.927,-30.404,0	0/1:62:39,23:39:1395:23:828:-56.1803,0,-107.186	0/1:34:14,20:14:501:20:720:-54.8938,0,-35.1917	0/1:88:37,51:37:1328:51:1828:-138.31,0,-93.3318	1/1:69:0,69:0:0:69:2473:-222.822,-20.7711,0	0/1:273:189,84:189:6731:84:2973:-185.608,0,-523.685	0/1:21:14,7:14:501:7:252:-16.7073,0,-39.1051	1/1:92:0,91:0:0:91:3272:-294.359,-27.3937,0	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	0/1:220:104,115:104:3673:115:4112:-304.089,0,-264.599	1/1:85:0,85:0:0:85:3014:-271.489,-25.5876,0	1/1:23:1,22:1:36:22:792:-68.0074,-3.32542,0	1/1:236:0,235:0:0:235:8414:-756.962,-70.7421,0	0/1:126:59,66:59:2070:66:2356:-174.31,0,-148.579	1/1:70:0,70:0:0:70:2493:-224.622,-21.0721,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:140:72,68:72:2555:68:2420:-175.912,0,-188.056	0/1:181:97,81:97:3423:81:2887:-206.164,0,-254.385	1/1:60:0,60:0:0:60:2134:-192.327,-18.0618,0	1/1:2:0,2:0:0:2:63:-5.98315,-0.60206,0	0/1:90:39,51:39:1389:51:1791:-134.378,0,-98.216	1/1:48:0,48:0:0:48:1711:-154.275,-14.4494,0	1/1:76:1,75:1:36:75:2669:-236.856,-19.28,0	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:47:0,47:0:0:47:1677:-151.215,-14.1484,0	0/1:34:14,20:14:492:20:716:-54.5327,0,-34.3772	0/1:58:28,30:28:1002:30:1068:-78.9704,0,-73.0362	1/1:103:0,103:0:0:103:3637:-327.535,-31.0061,0	1/1:87:0,87:0:0:87:3115:-280.576,-26.1896,0	0/1:123:63,60:63:2248:60:2129:-154.85,0,-165.557	1/1:138:0,138:0:0:138:4943:-445.019,-41.5421,0	0/1:8:2,6:2:70:6:216:-17.3823,0,-4.23909	1/1:120:0,119:0:0:119:4253:-382.697,-35.8226,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:13:5,8:5:175:8:288:-22.354,0,-12.1801	1/1:73:0,72:0:0:72:2567:-231.028,-21.6742,0	0/1:18:8,10:8:286:10:352:-26.5997,0,-20.6669	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	1/1:58:0,58:0:0:58:2051:-184.859,-17.4597,0	0/1:164:97,66:97:3459:66:2349:-162.24,0,-262.094	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:116:41,75:41:1467:75:2665:-205.175,0,-97.407	1/1:188:1,187:1:36:187:6645:-594.534,-52.9954,0	0/1:71:35,36:35:1238:36:1280:-94.1301,0,-90.3422	1/1:44:0,44:0:0:44:1553:-140.06,-13.2453,0	0/1:81:49,32:49:1755:32:1129:-77.5329,0,-133.851	1/1:53:0,53:0:0:53:1886:-170.017,-15.9546,0	0/1:38:17,21:17:601:21:755:-56.8379,0,-42.9798	1/1:67:0,67:0:0:67:2382:-214.638,-20.169,0	1/1:103:0,103:0:0:103:3655:-329.153,-31.0061,0	0/1:15:10,5:10:352:5:180:-12.0366,0,-27.5022	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:45:0,44:0:0:44:1576:-141.772,-13.2453,0	1/1:79:0,79:0:0:79:2819:-253.89,-23.7814,0	0/1:97:54,43:54:1890:43:1532:-108.973,0,-141.175	1/1:115:0,115:0:0:115:4120:-370.984,-34.6185,0	0/1:43:19,24:19:677:24:852:-64.0561,0,-48.3143	0/1:18:8,10:8:284:10:356:-26.9627,0,-20.485	0/1:90:50,40:50:1738:40:1420:-100.733,0,-129.608	1/1:66:0,66:0:0:66:2352:-211.938,-19.868,0	1/1:147:0,147:0:0:147:5280:-475.334,-44.2514,0	0/1:93:43,50:43:1508:50:1772:-131.767,0,-108.015	1/1:33:0,33:0:0:33:1182:-106.688,-9.93399,0	1/1:53:0,53:0:0:53:1893:-170.648,-15.9546,0	0/1:113:56,57:56:2000:57:2031:-149.028,0,-146.257	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:48:25,23:25:884:23:828:-60.3947,0,-65.4286	0/1:56:26,30:26:917:30:1067:-79.4835,0,-65.9879	1/1:91:0,90:0:0:90:3201:-287.95,-27.0927,0	0/1:135:59,75:59:2083:75:2688:-201.546,0,-147.12	0/1:49:33,16:33:1181:16:576:-37.4245,0,-91.8479	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:76:3,73:3:106:73:2608:-225.079,-12.9892,0
chr11	19374798	.	G	A	27220.3	PASS	AB=0.508021;ABP=4.78696;AC=40;AF=0.212766;AN=188;AO=1620;CIGAR=1X;DP=6945;DPB=6945;DPRA=1.16718;EPP=3520.8;EPPR=11537.9;GTI=0;LEN=1;MEANALT=1.02222;MQM=59.979;MQMR=59.9814;NS=94;NUMALT=1;ODDS=0.227641;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57858;QR=190271;RO=5324;RPL=1620;RPP=3520.8;RPPR=11537.9;RPR=0;RUN=1;SAF=1620;SAP=3520.8;SAR=0;SRF=5324;SRP=11563.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:111:49,62:49:1760:62:2200:-164.848,0,-125.27	0/0:108:108,0:108:3838:0:0:0,-32.5112,-345.607	0/1:113:59,54:59:2120:54:1944:-141.22,0,-157.052	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.889	0/0:86:86,0:86:3073:0:0:0,-25.8886,-276.789	0/1:34:20,14:20:716:14:493:-34.4638,0,-54.5327	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.304	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:47:16,31:16:572:31:1103:-85.4224,0,-37.665	0/1:62:30,32:30:1067:32:1143:-84.5155,0,-77.6774	0/0:114:114,0:114:4068:0:0:0,-34.3174,-366.308	0/1:49:25,24:25:900:24:860:-62.9714,0,-66.5705	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/0:102:102,0:102:3644:0:0:0,-30.7051,-328.165	0/1:61:23,38:23:824:38:1368:-105.058,0,-56.1205	0/1:34:20,14:20:716:14:504:-35.4631,0,-54.5327	0/1:91:57,34:57:2044:34:1220:-82.7131,0,-156.838	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.206	0/1:277:88,189:88:3136:189:6744:-523.649,0,-199.022	0/1:20:6,14:6:216:14:496:-38.9531,0,-13.7699	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/1:223:120,103:120:4300:103:3700:-266.071,0,-320.047	0/0:87:87,0:87:3086:0:0:0,-26.1896,-277.966	0/0:24:23,1:23:800:1:36:0,-3.62644,-68.7175	0/0:243:243,0:243:8708:0:0:0,-73.1503,-783.709	0/1:130:72,58:72:2588:58:2074:-147.795,0,-194.035	0/0:73:73,0:73:2582:0:0:0,-21.9752,-232.627	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:12:11,1:11:396:1:28:0,-0.812633,-33.183	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:140:70,70:70:2508:70:2503:-183.378,0,-183.828	0/1:180:84,96:84:3008:96:3428:-254.547,0,-216.721	0/0:61:61,0:61:2160:0:0:0,-18.3628,-194.665	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:92:53,39:53:1895:39:1385:-97.2521,0,-143.133	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:34:20,14:20:720:14:504:-35.4631,0,-54.8938	0/1:58:30,28:30:1080:28:1004:-73.2161,0,-80.0453	0/0:104:103,1:103:3662:1:36:0,-27.7088,-326.184	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/1:122:59,63:59:2096:63:2245:-165.586,0,-152.182	0/0:139:139,0:139:4973:0:0:0,-41.8432,-447.717	0/1:11:9,2:9:315:2:72:-3.52539,0,-25.3759	0/0:120:120,0:120:4289:0:0:0,-36.1236,-386.186	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:74:74,0:74:2616:0:0:0,-22.2762,-235.687	0/1:18:10,8:10:352:8:284:-20.4848,0,-26.5997	0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2943	0/0:34:34,0:34:1194:0:0:0,-10.235,-107.761	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123	0/1:165:67,98:67:2392:98:3501:-265.63,0,-165.867	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:118:77,41:77:2749:41:1472:-97.2546,0,-212.129	0/0:200:199,1:199:7128:1:36:0,-56.6077,-637.973	0/1:71:38,33:38:1368:33:1173:-84.4943,0,-102.048	0/0:46:46,0:46:1618:0:0:0,-13.8474,-145.905	0/1:80:31,49:31:1108:49:1760:-134.601,0,-75.9486	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.128	0/1:39:22,17:22:779:17:612:-43.6733,0,-58.6919	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/0:79:79,0:79:2784:0:0:0,-23.7814,-250.798	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:82:82,0:82:2914:0:0:0,-24.6845,-262.493	0/1:97:43,54:43:1548:54:1929:-144.685,0,-110.413	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.778	0/1:44:26,18:26:932:18:640:-44.6834,0,-70.9535	0/1:18:10,8:10:352:8:283:-20.3937,0,-26.5997	0/1:92:41,50:41:1442:50:1785:-133.285,0,-102.426	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:155:155,0:155:5564:0:0:0,-46.6596,-500.882	0/1:93:51,42:51:1816:42:1485:-105.947,0,-135.726	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:116:60,56:60:2148:56:2012:-146.434,0,-158.661	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:46:24,22:24:860:22:777:-56.403,0,-63.8745	0/1:55:29,26:29:1040:26:932:-67.6422,0,-77.3577	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.82	0/1:142:82,60:82:2935:60:2152:-151.201,0,-221.637	0/1:51:18,33:18:648:33:1143:-87.817,0,-43.2994	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:74:73,1:73:2620:1:36:0,-18.6779,-232.449
chr11	19374799	.	G	T	111675	PASS	AB=0.492043;ABP=4.73808;AC=148;AF=0.787234;AN=188;AO=5254;CIGAR=1X;DP=6854;DPB=6854;DPRA=0;EPP=11394.6;EPPR=3473.02;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9785;MQMR=59.9825;NS=94;NUMALT=1;ODDS=0.246915;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187700;QR=57024;RO=1598;RPL=5252;RPP=11394.6;RPPR=3473.02;RPR=2;RUN=1;SAF=5254;SAP=11411.9;SAR=0;SRF=1598;SRP=3473.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:111:62,49:62:2220:49:1750:-124.37,0,-166.65	1/1:104:0,104:0:0:104:3720:-334.994,-31.3071,0	0/1:115:53,62:53:1881:62:2228:-166.165,0,-134.948	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:33:0,33:0:0:33:1164:-105.064,-9.93399,0	1/1:75:0,75:0:0:75:2700:-243.243,-22.5773,0	1/1:86:0,86:0:0:86:3028:-272.732,-25.8886,0	0/1:33:13,20:13:449:20:702:-53.5685,0,-30.7963	1/1:84:0,83:0:0:83:2976:-267.811,-24.9855,0	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	0/1:44:30,13:30:1071:13:468:-29.2761,0,-83.5151	0/1:62:32,30:32:1120:30:1080:-78.8494,0,-82.441	1/1:113:0,113:0:0:113:4035:-363.338,-34.0164,0	0/1:49:24,25:24:849:25:900:-66.5705,0,-61.9774	1/1:60:0,60:0:0:60:2139:-192.777,-18.0618,0	1/1:101:0,101:0:0:101:3576:-322.048,-30.404,0	0/1:62:38,24:38:1368:24:856:-58.6972,0,-104.757	0/1:34:13,21:13:468:21:747:-57.3193,0,-32.2246	0/1:89:37,52:37:1332:52:1872:-141.967,0,-93.3907	1/1:71:0,71:0:0:71:2528:-227.765,-21.3731,0	0/1:269:184,85:184:6574:85:3028:-191.774,0,-510.762	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	1/1:92:0,92:0:0:92:3294:-296.678,-27.6948,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:222:100,122:100:3558:122:4364:-326.104,0,-253.598	1/1:87:0,87:0:0:87:3115:-280.576,-26.1896,0	1/1:22:1,21:1:36:21:756:-64.7689,-3.02439,0	1/1:237:0,237:0:0:237:8477:-762.928,-71.3441,0	0/1:126:57,69:57:2052:69:2450:-182.822,0,-147.022	1/1:71:0,71:0:0:71:2537:-228.579,-21.3731,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:11:0,11:0:0:11:384:-34.8941,-3.31133,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:139:70,69:70:2501:69:2467:-180.44,0,-183.498	0/1:180:95,85:95:3386:85:3052:-220.679,0,-250.767	1/1:60:0,60:0:0:60:2136:-192.508,-18.0618,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:91:37,54:37:1328:54:1916:-145.321,0,-92.4285	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:78:0,78:0:0:78:2785:-250.889,-23.4803,0	1/1:58:0,58:0:0:58:2067:-186.3,-17.4597,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:31:14,17:14:504:17:612:-46.0815,0,-36.3662	0/1:57:27,30:27:968:30:1080:-80.3464,0,-70.2787	1/1:105:0,105:0:0:105:3744:-337.162,-31.6082,0	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0	0/1:121:63,58:63:2268:58:2057:-148.975,0,-167.957	1/1:137:0,137:0:0:137:4915:-442.499,-41.2411,0	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	1/1:120:0,120:0:0:120:4296:-386.817,-36.1236,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:14:5,9:5:180:9:324:-25.2914,0,-12.3376	1/1:74:0,74:0:0:74:2609:-235.056,-22.2762,0	0/1:16:8,8:8:284:8:284:-21.0869,0,-21.0869	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	0/1:164:96,68:96:3440:68:2406:-167.427,0,-260.444	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:116:40,76:40:1436:76:2718:-209.943,0,-94.6182	1/1:196:1,195:1:36:195:6963:-623.127,-55.4036,0	0/1:73:34,39:34:1188:39:1400:-104.324,0,-85.2388	1/1:46:0,46:0:0:46:1633:-147.257,-13.8474,0	0/1:80:48,32:48:1720:32:1137:-78.5546,0,-131.003	1/1:57:0,57:0:0:57:2023:-182.34,-17.1587,0	0/1:38:16,22:16:572:22:779:-58.9929,0,-40.3743	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:101:0,101:0:0:101:3627:-326.633,-30.404,0	0/1:16:10,6:10:352:6:216:-14.974,0,-27.2017	1/1:76:0,76:0:0:76:2717:-244.773,-22.8783,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	0/1:96:52,44:52:1823:44:1576:-113.233,0,-135.446	1/1:118:0,118:0:0:118:4207:-378.809,-35.5215,0	0/1:45:19,26:19:684:26:927:-70.201,0,-48.344	0/1:18:8,10:8:280:10:339:-25.419,0,-20.1208	0/1:91:50,41:50:1785:41:1460:-104.031,0,-133.537	1/1:65:0,65:0:0:65:2328:-209.78,-19.567,0	1/1:149:0,149:0:0:149:5336:-480.37,-44.8535,0	0/1:90:41,49:41:1446:49:1756:-131.231,0,-103.339	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:55:0,55:0:0:55:1959:-176.585,-16.5567,0	0/1:114:56,58:56:2008:58:2076:-152.776,0,-146.676	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:49:24,25:24:860:25:896:-66.2099,0,-62.9714	0/1:54:25,29:25:896:29:1031:-76.847,0,-64.7047	1/1:93:0,93:0:0:93:3317:-298.747,-27.9958,0	0/1:138:60,78:60:2129:78:2744:-205.661,0,-150.335	0/1:50:33,17:33:1180:17:608:-40.0005,0,-91.4565	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:76:1,75:1:36:75:2687:-238.476,-19.28,0
chr11	19562411	.	G	T	14406.9	PASS	AB=0.49547;ABP=3.32508;AC=39;AF=0.207447;AN=188;AO=881;CIGAR=1X;DP=4185;DPB=4185;DPRA=1.1421;EPP=1916.08;EPPR=7173.21;GTI=0;LEN=1;MEANALT=1;MQM=59.8127;MQMR=59.9337;NS=94;NUMALT=1;ODDS=4.10272;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31466;QR=116995;RO=3302;RPL=0;RPP=1916.08;RPPR=7173.21;RPR=881;RUN=1;SAF=0;SAP=1916.08;SAR=881;SRF=0;SRP=7173.21;SRR=3302;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/1:51:30,21:30:1051:21:756:-51.9911,0,-79.228	0/0:91:90,1:90:3191:1:36:0,-23.7955,-283.817	0/1:79:46,33:46:1620:33:1158:-79.6343,0,-122.305	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:79:79,0:79:2807:0:0:0,-23.7814,-252.87	0/1:83:36,47:36:1272:47:1676:-126.012,0,-89.7974	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3732	0/1:36:24,12:24:841:12:432:-28.3841,0,-65.1693	0/1:38:20,18:20:716:18:633:-45.8559,0,-53.3286	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:25:14,11:14:504:11:392:-28.0943,0,-38.1723	0/0:24:24,0:24:833:0:0:0,-7.22472,-75.2836	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/1:24:14,10:14:500:10:351:-24.702,0,-38.1115	0/1:11:7,4:7:252:4:133:-8.98626,0,-19.7176	0/1:78:38,40:38:1353:40:1440:-106.417,0,-98.5881	0/0:78:78,0:78:2771:0:0:0,-23.4803,-249.632	0/1:101:40,61:40:1432:61:2180:-166.062,0,-98.7732	0/1:43:23,20:23:824:20:720:-52.1845,0,-61.539	0/0:27:27,0:27:936:0:0:0,-8.12781,-84.5501	0/0:68:68,0:68:2417:0:0:0,-20.47,-217.785	0/1:139:54,85:54:1932:85:3052:-233.066,0,-132.313	0/0:83:82,1:82:2894:1:21:0,-23.0608,-258.77	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:152:150,0:150:5265:0:0:0,-45.1545,-473.627	0/1:70:37,33:37:1323:33:1179:-85.3451,0,-98.2959	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	0/0:10:10,0:10:351:0:0:0,-3.0103,-31.9267	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:56:28,28:28:999:28:1000:-73.4577,0,-73.3562	0/1:99:61,38:61:2171:38:1340:-91.0945,0,-165.853	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:70:36,34:36:1273:34:1220:-89.0347,0,-93.7812	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:98:98,0:98:3461:0:0:0,-29.5009,-311.702	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:65:28,37:28:1000:37:1332:-100.582,0,-70.7459	0/0:73:73,0:73:2547:0:0:0,-21.9752,-229.474	0/0:65:65,0:65:2278:0:0:0,-19.5669,-205.28	0/1:32:17,15:17:599:15:540:-39.3036,0,-44.6051	0/0:87:87,0:87:3073:0:0:0,-26.1896,-276.8	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:68:68,0:68:2406:0:0:0,-20.47,-216.742	0/0:41:41,0:41:1448:0:0:0,-12.3422,-130.613	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:62:62,0:62:2193:0:0:0,-18.6639,-197.632	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:11:11,0:11:371:0:0:0,-3.31133,-33.7152	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.685	0/1:45:25,20:25:896:20:716:-51.2214,0,-67.414	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:86:41,45:41:1444:45:1616:-119.841,0,-104.365	0/0:87:84,3:84:2979:3:108:0,-16.1144,-258.266	0/1:53:33,20:33:1170:20:720:-49.1742,0,-89.6513	0/0:37:37,0:37:1315:0:0:0,-11.1381,-118.651	0/1:66:26,40:26:936:40:1428:-108.95,0,-64.6915	0/0:110:110,0:110:3868:0:0:0,-33.1133,-348.23	0/1:11:8,3:8:276:3:108:-6.76384,0,-21.8639	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:97:97,0:97:3402:0:0:0,-29.1999,-306.323	0/0:51:51,0:51:1800:0:0:0,-15.3525,-162.279	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.92	0/1:70:42,28:42:1508:28:999:-69.1524,0,-114.943	0/0:79:79,0:79:2795:0:0:0,-23.7814,-250.933	0/1:31:17,14:17:608:14:504:-36.3662,0,-45.7197	0/1:11:6,5:6:201:5:180:-13.2407,0,-15.1057	0/1:52:23,29:23:824:29:1036:-77.8998,0,-58.8298	0/0:66:66,0:66:2329:0:0:0,-19.868,-209.868	0/0:106:106,0:106:3755:0:0:0,-31.9092,-338.146	0/1:22:15,7:15:540:7:252:-16.4063,0,-42.3139	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:26:25,1:25:888:1:36:0,-4.2285,-76.6408	0/1:39:22,17:22:792:17:599:-42.4979,0,-59.8655	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:33:16,17:16:553:17:608:-45.118,0,-40.16	0/1:40:19,21:19:663:21:756:-56.326,0,-47.9523	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:35:12,23:12:428:23:805:-62.2323,0,-28.3228	0/1:24:5,19:5:180:19:684:-54.6656,0,-9.32734	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321
chr11	19562421	.	C	T	69122.7	PASS	AB=0.508281;ABP=4.05325;AC=149;AF=0.792553;AN=188;AO=3298;CIGAR=1X;DP=4163;DPB=4163;DPRA=0;EPP=7164.53;EPPR=1881.33;GTI=0;LEN=1;MEANALT=1;MQM=59.9066;MQMR=59.8983;NS=94;NUMALT=1;ODDS=4.43023;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=116256;QR=30868;RO=865;RPL=0;RPP=7164.53;RPPR=1881.33;RPR=3298;RUN=1;SAF=0;SAP=7164.53;SAR=3298;SRF=0;SRP=1881.33;SRR=865;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:909:-82.1234,-7.82678,0	0/1:49:19,30:19:684:30:1056:-79.6613,0,-46.1157	1/1:95:0,95:0:0:95:3340:-300.822,-28.5979,0	0/1:77:31,46:31:1108:46:1605:-121.558,0,-76.8435	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	1/1:33:0,33:0:0:33:1154:-104.162,-9.93399,0	1/1:36:0,36:0:0:36:1272:-114.783,-10.8371,0	1/1:79:0,79:0:0:79:2816:-253.629,-23.7814,0	0/1:80:45,35:45:1604:35:1240:-87.8221,0,-120.511	1/1:31:0,31:0:0:31:1073:-96.8759,-9.33193,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:37:13,24:13:464:24:840:-64.7801,0,-30.9594	0/1:38:18,20:18:644:20:708:-52.6065,0,-46.8515	1/1:20:0,20:0:0:20:700:-63.3235,-6.0206,0	0/1:25:11,14:11:396:14:496:-37.4485,0,-28.457	1/1:23:0,23:0:0:23:813:-73.49,-6.92369,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:24:10,14:10:352:14:504:-38.4734,0,-24.7935	0/1:12:5,7:5:176:7:233:-17.6819,0,-12.5727	0/1:76:39,37:39:1389:37:1308:-95.1432,0,-102.429	1/1:77:0,77:0:0:77:2694:-242.704,-23.1793,0	0/1:100:61,39:61:2181:39:1380:-94.3953,0,-166.451	0/1:43:20,23:20:720:23:820:-61.1782,0,-52.1845	1/1:27:0,27:0:0:27:925:-83.5589,-8.12781,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	0/1:140:83,57:83:2961:57:1993:-137.499,0,-224.578	1/1:84:0,84:0:0:84:2959:-266.315,-25.2865,0	1/1:8:0,8:0:0:8:279:-25.4475,-2.40824,0	1/1:148:0,148:0:0:148:5210:-469.042,-44.5524,0	0/1:69:31,38:31:1116:38:1338:-99.9415,0,-79.9806	1/1:43:0,43:0:0:43:1520:-137.093,-12.9443,0	0/1:7:4,3:4:144:3:99:-7.12937,0,-11.2064	1/1:10:0,10:0:0:10:344:-31.2921,-3.0103,0	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:55:27,28:27:964:28:988:-72.6666,0,-70.5202	0/1:96:36,60:36:1281:60:2140:-163.968,0,-86.6924	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:68:34,34:34:1216:34:1188:-86.7372,0,-89.2765	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:100:0,100:0:0:100:3545:-319.26,-30.103,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	0/1:13:3,10:3:108:10:348:-27.7417,0,-6.16178	0/1:63:36,27:36:1296:27:968:-68.4663,0,-97.9506	1/1:73:0,73:0:0:73:2566:-231.187,-21.9752,0	1/1:61:0,61:0:0:61:2149:-193.676,-18.3628,0	0/1:33:16,17:16:561:17:596:-44.0338,0,-40.8831	1/1:84:0,84:0:0:84:2934:-264.296,-25.2865,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:66:1,65:1:36:65:2331:-206.4,-16.2697,0	1/1:43:0,43:0:0:43:1535:-138.428,-12.9443,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:62:0,62:0:0:62:2181:-196.555,-18.6639,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:56:0,56:0:0:56:1988:-179.183,-16.8577,0	0/1:45:20,25:20:707:25:888:-66.6927,0,-50.4082	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:87:45,42:45:1612:42:1489:-108.113,0,-119.18	1/1:88:3,85:3:104:85:2981:-258.822,-16.7878,0	0/1:52:19,33:19:665:33:1165:-89.5014,0,-44.5192	1/1:36:0,36:0:0:36:1273:-114.871,-10.8371,0	0/1:66:40,26:40:1417:26:924:-63.6097,0,-107.957	1/1:112:0,112:0:0:112:3965:-356.839,-33.7154,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:41:0,41:0:0:41:1436:-129.536,-12.3422,0	1/1:29:0,29:0:0:29:1023:-92.3808,-8.72987,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:96:0,96:0:0:96:3397:-305.917,-28.8989,0	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0	1/1:69:0,69:0:0:69:2397:-215.987,-20.7711,0	0/1:69:27,42:27:957:42:1488:-113.443,0,-65.6728	1/1:82:0,82:0:0:82:2909:-261.187,-24.6845,0	0/1:31:14,17:14:500:17:589:-44.0005,0,-36.0042	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/1:53:29,24:29:1044:24:848:-60.6851,0,-78.3202	1/1:66:0,66:0:0:66:2299:-207.16,-19.868,0	1/1:105:0,105:0:0:105:3676:-331.041,-31.6082,0	0/1:22:7,15:7:248:15:513:-39.8702,0,-16.0415	1/1:30:0,30:0:0:30:1041:-93.9974,-9.0309,0	1/1:26:0,26:0:0:26:908:-82.0353,-7.82678,0	0/1:39:17,22:17:604:22:776:-58.422,0,-42.9504	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:33:17,16:17:597:16:556:-40.4332,0,-44.1221	0/1:39:21,18:21:752:18:625:-44.8337,0,-56.2436	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:36:24,12:24:860:12:428:-28.0217,0,-66.8848	0/1:23:18,5:18:644:5:180:-9.62837,0,-51.3669	1/1:35:0,35:0:0:35:1230:-111.004,-10.5361,0	1/1:30:0,30:0:0:30:1056:-95.3509,-9.0309,0
chr11	19591157	.	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chr11	19858023	.	G	A	297.769	PASS	AB=0.394052;ABP=29.2375;AC=15;AF=0.0806452;AN=186;AO=181;CIGAR=1X;DP=9098;DPB=9098;DPRA=0.730245;EPP=387.409;EPPR=19216.5;GTI=9;LEN=1;MEANALT=1;MQM=42.5967;MQMR=43.6411;NS=93;NUMALT=1;ODDS=0.376505;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=6447;QR=319212;RO=8916;RPL=1;RPP=387.409;RPPR=19207.8;RPR=180;RUN=1;SAF=181;SAP=396.047;SAR=0;SRF=8915;SRP=19355.2;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:73:73,0:73:2624:0:0:0,-21.9752,-223.415	0/0:83:82,1:82:2932:1:36:0,-21.5979,-249.588	0/0:158:158,0:158:5672:0:0:0,-47.5627,-487.919	0/0:116:109,7:109:3908:7:252:0,-12.4458,-324.852	0/0:30:30,0:30:1080:0:0:0,-9.0309,-95.4527	0/0:85:85,0:85:3048:0:0:0,-25.5875,-262.187	0/0:332:332,0:332:11901:0:0:0,-99.942,-1051.95	0/0:339:339,0:339:12152:0:0:0,-102.049,-1044.12	0/0:79:75,4:75:2700:4:140:0,-11.5108,-219.619	0/0:185:185,0:185:6627:0:0:0,-55.6905,-585.307	0/0:13:13,0:13:464:0:0:0,-3.91339,-41.6167	0/1:17:11,6:11:381:6:212:-13.2532,0,-28.1911	0/1:13:8,5:8:288:5:180:-11.6696,0,-21.2434	0/0:15:15,0:15:540:0:0:0,-4.51545,-47.8857	0/1:15:9,6:9:324:6:216:-14.884,0,-22.6055	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.2101	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.7816	0/1:14:7,7:7:252:7:252:-17.6588,0,-17.8943	0/1:8:4,4:4:144:4:144:-10.0439,0,-10.3448	0/0:151:148,3:148:5319:3:93:0,-36.927,-461.41	0/0:220:220,0:220:7885:0:0:0,-66.2266,-691.389	0/0:44:42,2:42:1485:2:72:0,-6.50314,-125.104	0/0:165:164,1:164:5884:1:36:0,-46.1489,-517.612	0/0:306:306,0:306:10961:0:0:0,-92.1152,-962.604	0/0:67:67,0:67:2397:0:0:0,-20.169,-210.544	0/0:211:209,2:209:7461:2:57:0,-58.1672,-660.871	0/0:92:92,0:92:3285:0:0:0,-27.6948,-287.588	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.6666	0/0:183:183,0:183:6564:0:0:0,-55.0885,-584.509	0/0:86:86,0:86:3073:0:0:0,-25.8886,-270.206	0/0:225:225,0:225:8053:0:0:0,-67.7317,-711.017	0/1:4:3,1:3:108:1:36:-2.27658,0,-8.6547	0/0:23:23,0:23:828:0:0:0,-6.92369,-73.2005	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.7816	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.7817	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.45449	0/1:50:30,20:30:1076:20:716:-48.4828,0,-81.3044	0/0:93:90,3:90:3205:3:93:0,-19.5425,-273.957	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.67257	.:.:.:.:.:.:.:.	0/0:87:84,3:84:2982:3:104:0,-16.7537,-252.515	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.1966	0/0:83:83,0:83:2980:0:0:0,-24.9855,-261.742	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.5862	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.7548	0/0:83:81,2:81:2893:2:72:0,-18.2433,-251.275	0/0:81:78,3:78:2787:3:108:0,-14.8981,-231.076	0/0:249:248,0:248:8870:0:0:0,-74.6554,-782.391	0/0:196:196,0:196:6991:0:0:0,-59.0019,-619.87	0/0:181:175,6:175:6296:6:216:0,-35.2432,-537.11	0/0:200:200,0:200:7149:0:0:0,-60.206,-636.441	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.3696	0/0:130:129,1:129:4617:1:36:0,-35.5356,-391.997	0/0:279:279,0:279:9967:0:0:0,-83.9874,-888.518	0/0:31:31,0:31:1112:0:0:0,-9.33193,-95.4479	0/0:200:200,0:200:7135:0:0:0,-60.206,-625.561	0/0:47:47,0:47:1669:0:0:0,-14.1484,-148.788	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4242	0/0:33:33,0:33:1188:0:0:0,-9.93399,-106.347	0/0:202:202,0:202:7243:0:0:0,-60.8081,-628.811	0/1:28:18,10:18:648:10:356:-23.2621,0,-49.5426	0/0:3:3,0:3:108:0:0:0,-0.90309,-8.85805	0/0:130:121,9:121:4340:9:324:0,-10.0611,-357.239	0/0:429:429,0:429:15362:0:0:0,-129.142,-1355.96	0/0:127:124,3:124:4452:3:108:0,-28.4849,-382.212	0/0:230:230,0:230:8248:0:0:0,-69.2369,-731.734	0/0:107:100,7:100:3577:7:252:0,-9.67575,-294.882	0/0:245:244,1:244:8713:1:36:0,-70.2313,-770.213	0/1:4:3,1:3:108:1:36:-2.27658,0,-8.6547	0/0:195:195,0:195:6966:0:0:0,-58.7008,-595.406	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.2245	0/0:23:22,1:22:773:1:36:0,-3.40268,-65.592	0/0:160:160,0:160:5705:0:0:0,-48.1648,-490.65	0/0:143:143,0:143:5121:0:0:0,-43.0473,-436.598	0/0:116:116,0:116:4168:0:0:0,-34.9195,-365.219	0/0:145:136,9:136:4896:9:324:0,-14.804,-404.66	0/0:51:51,0:51:1832:0:0:0,-15.3525,-154.462	0/0:208:204,4:204:7294:4:140:0,-50.3436,-615.236	0/0:42:41,1:41:1463:1:36:0,-9.25566,-123.364	0/0:161:159,2:159:5693:2:72:0,-41.8525,-491.046	0/0:376:376,0:376:13439:0:0:0,-113.187,-1154.2	0/0:170:170,0:170:6108:0:0:0,-51.1751,-542.314	0/1:24:16,8:16:576:8:288:-18.5491,0,-43.1865	0/0:16:16,0:16:557:0:0:0,-4.81648,-48.6025	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.2465	0/1:28:19,9:19:684:9:324:-20.4434,0,-52.255	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.8907	0/1:18:9,9:9:324:9:324:-22.322,0,-22.8473	0/1:10:6,4:6:216:4:144:-9.71869,0,-15.9894	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.4526	0/1:20:13,7:13:464:7:252:-16.2558,0,-35.2058	0/1:16:7,9:7:252:9:324:-24.0558,0,-17.915	0/0:158:158,0:158:5657:0:0:0,-47.5627,-502.908	0/0:29:29,0:29:1044:0:0:0,-8.72987,-92.9581
chr11	19866838	.	T	C	74950.6	PASS	AB=0.493969;ABP=5.13197;AC=40;AF=0.212766;AN=188;AO=3333;CIGAR=1X;DP=15679;DPB=15679;DPRA=1.12725;EPP=86.0442;EPPR=96.5205;GTI=0;LEN=1;MEANALT=1.08163;MQM=59.9667;MQMR=59.9967;NS=94;NUMALT=1;ODDS=8.54647;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117930;QR=439490;RO=12341;RPL=10;RPP=7153.93;RPPR=26549.9;RPR=3323;RUN=1;SAF=1855;SAP=95.6083;SAR=1478;SRF=6564;SRP=111.992;SRR=5777;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:293:137,156:137:4877:156:5482:-405.224,0,-350.882	0/0:316:316,0:316:11274:0:0:0,-95.1255,-1014.55	0/1:295:152,143:152:5365:143:5072:-367.818,0,-394.183	0/0:172:172,0:172:6132:0:0:0,-51.7772,-551.979	0/0:77:77,0:77:2749:0:0:0,-23.1793,-247.651	0/0:209:209,0:209:7401:0:0:0,-62.9153,-666.143	0/0:244:244,0:244:8726:0:0:0,-73.4513,-785.317	0/1:141:67,74:67:2396:74:2616:-193.045,0,-173.452	0/0:160:160,0:160:5681:0:0:0,-48.1648,-511.413	0/0:158:158,0:158:5634:0:0:0,-47.5627,-507.182	0/1:133:67,66:67:2404:66:2328:-169.742,0,-176.579	0/1:148:78,70:78:2760:70:2482:-179.081,0,-204.088	0/0:245:245,0:245:8745:0:0:0,-73.7523,-787.042	0/1:146:74,72:74:2640:72:2524:-183.46,0,-193.897	0/0:176:176,0:176:6232:0:0:0,-52.9813,-560.979	0/0:168:168,0:168:5967:0:0:0,-50.573,-537.139	0/1:99:47,52:47:1692:52:1860:-137.878,0,-122.765	0/1:98:40,58:40:1423:58:2063:-156.44,0,-98.8658	0/1:348:180,167:180:6411:167:5917:-427.826,0,-472.262	0/0:259:258,0:258:9200:0:0:0,-77.6657,-827.761	0/1:114:52,62:52:1868:62:2186:-162.688,0,-134.082	0/1:128:74,54:74:2640:54:1927:-135.174,0,-199.315	0/0:205:205,0:205:7256:0:0:0,-61.7111,-653.096	0/0:137:137,0:137:4879:0:0:0,-41.2411,-439.265	0/1:372:184,187:184:6562:187:6596:-481.689,0,-478.619	0/0:324:324,0:324:11475:0:0:0,-97.5337,-1032.64	0/0:75:75,0:75:2659:0:0:0,-22.5772,-239.557	0/0:381:381,0:381:13574:0:0:0,-114.692,-1221.46	0/1:157:89,68:89:3166:68:2436:-172.234,0,-237.903	0/0:168:168,0:168:5992:0:0:0,-50.573,-539.389	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:17:17,0:17:593:0:0:0,-5.11751,-53.6947	0/1:341:171,169:171:6098:169:5949:-432.965,0,-446.362	0/1:151:88,63:88:3144:63:2218:-154.426,0,-237.731	0/0:161:160,1:160:5679:1:32:0,-45.2665,-508.032	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:323:154,169:154:5499:169:6006:-443.417,0,-397.805	0/0:80:80,0:80:2839:0:0:0,-24.0824,-255.749	0/0:284:284,0:284:10123:0:0:0,-85.4925,-911.005	0/0:135:135,0:135:4796:0:0:0,-40.639,-431.798	0/0:122:122,0:122:4324:0:0:0,-36.7257,-389.338	0/1:102:46,56:46:1630:56:1992:-148.849,0,-116.282	0/1:174:77,97:77:2751:97:3435:-256.973,0,-195.452	0/0:269:263,6:263:9382:6:216:0,-61.1866,-824.556	0/0:151:150,1:150:5368:1:36:0,-41.8573,-479.654	0/1:235:118,117:118:4205:117:4179:-305.55,0,-307.889	0/0:230:230,0:230:8201:0:0:0,-69.2369,-738.106	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/0:258:258,0:258:9186:0:0:0,-77.6657,-826.715	0/0:68:68,0:68:2415:0:0:0,-20.47,-217.606	0/1:32:17,15:17:584:15:519:-37.4038,0,-43.2478	0/0:231:230,1:230:8192:1:36:0,-65.9397,-733.698	0/1:56:29,27:29:1040:27:954:-69.3163,0,-77.0567	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:125:125,0:125:4465:0:0:0,-37.6287,-402.019	0/1:252:127,125:127:4526:125:4402:-320.497,0,-331.649	0/1:24:17,6:17:608:6:216:-12.6354,0,-47.9101	0/1:158:82,76:82:2931:76:2676:-193.436,0,-216.461	0/0:253:250,3:250:8868:3:108:0,-66.0854,-787.951	0/1:172:101,71:101:3582:71:2493:-172.846,0,-270.809	0/0:176:176,0:176:6272:0:0:0,-52.9813,-564.575	0/1:228:108,120:108:3860:120:4231:-312.327,0,-278.961	0/0:207:206,1:206:7334:1:36:0,-58.7149,-656.513	0/1:105:46,59:46:1640:59:2099:-157.571,0,-116.281	0/0:131:131,0:131:4683:0:0:0,-39.4349,-421.631	0/0:230:229,1:229:8134:1:36:0,-65.6386,-728.482	0/1:31:21,10:21:752:10:338:-21.4141,0,-58.6743	0/0:119:119,0:119:4255:0:0:0,-35.8226,-383.129	0/0:134:134,0:134:4742:0:0:0,-40.338,-426.941	0/0:253:253,0:253:9007:0:0:0,-76.1606,-810.616	0/1:231:113,118:113:4052:118:4200:-308.645,0,-295.329	0/0:234:233,1:233:8321:1:32:0,-67.2417,-745.699	0/1:219:123,96:123:4377:96:3386:-239.03,0,-328.179	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:236:127,109:127:4544:109:3868:-277.272,0,-338.084	0/0:189:188,1:188:6722:1:36:0,-53.2964,-601.456	0/0:292:292,0:292:10368:0:0:0,-87.9008,-933.047	0/1:210:108,102:108:3847:102:3627:-263.42,0,-283.211	0/0:183:183,0:183:6543:0:0:0,-55.0885,-588.953	0/0:195:195,0:195:6944:0:0:0,-58.7008,-625.028	0/1:292:146,146:146:5227:146:5167:-377.273,0,-382.666	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.853	0/1:106:57,49:57:2044:49:1740:-124.975,0,-152.323	0/1:128:62,66:62:2210:66:2335:-171.875,0,-160.632	0/0:176:176,0:176:6232:0:0:0,-52.9813,-560.982	0/1:267:142,125:142:5050:125:4375:-313.553,0,-374.273	0/1:136:53,83:53:1892:83:2964:-226.054,0,-129.618	0/0:177:177,0:177:6290:0:0:0,-53.2823,-566.198	0/0:215:215,0:215:7648:0:0:0,-64.7214,-688.36
chr11	19867309	.	C	T	43263.6	PASS	AB=0.526195;ABP=31.5649;AC=40;AF=0.212766;AN=188;AO=2524;CIGAR=1X;DP=10902;DPB=10902;DPRA=1.11226;EPP=5483.81;EPPR=18178.2;GTI=0;LEN=1;MEANALT=1.04651;MQM=54.5733;MQMR=59.9817;NS=94;NUMALT=1;ODDS=1.9728;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90379;QR=298131;RO=8370;RPL=0;RPP=5483.81;RPPR=18178.2;RPR=2524;RUN=1;SAF=2524;SAP=5483.81;SAR=0;SRF=8370;SRP=18178.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:164:78,86:78:2768:86:3084:-226.233,0,-199.994	0/0:231:231,0:231:8212:0:0:0,-69.5379,-739.101	0/1:257:121,136:121:4328:136:4868:-359.813,0,-312.331	0/0:45:45,0:45:1581:0:0:0,-13.5463,-142.578	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:139:139,0:139:4944:0:0:0,-41.8432,-445.114	0/0:158:158,0:158:5608:0:0:0,-47.5627,-504.848	0/1:49:19,30:19:680:30:1076:-81.9777,0,-46.7787	0/0:159:159,0:159:5677:0:0:0,-47.8638,-511.047	0/0:103:103,0:103:3676:0:0:0,-31.0061,-331.044	0/1:88:44,44:44:1545:44:1580:-115.649,0,-112.841	0/1:75:43,32:43:1536:32:1148:-80.6032,0,-115.956	0/0:110:110,0:110:3919:0:0:0,-33.1133,-352.904	0/1:88:45,43:45:1604:43:1540:-112.122,0,-118.16	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919	0/0:105:105,0:105:3740:0:0:0,-31.6081,-336.802	0/1:74:30,44:30:1055:44:1576:-119.194,0,-72.9838	0/1:61:30,31:30:1068:31:1116:-81.8918,0,-78.0692	0/1:301:162,139:162:5792:139:4988:-357.769,0,-430.785	0/0:109:108,0:108:3852:0:0:0,-32.5112,-346.517	0/1:150:48,102:48:1720:102:3645:-282.782,0,-109.931	0/1:97:28,69:28:1000:69:2464:-192.651,0,-61.1155	0/0:110:110,0:110:3924:0:0:0,-33.1133,-353.354	0/0:82:82,0:82:2916:0:0:0,-24.6845,-262.677	0/1:384:207,177:207:7349:177:6340:-453.721,0,-545.87	0/0:231:231,0:231:8174:0:0:0,-69.5379,-735.058	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:439:439,0:439:15633:0:0:0,-132.152,-1406.68	0/1:183:79,104:79:2796:104:3698:-277.037,0,-196.794	0/0:145:145,0:145:5156:0:0:0,-43.6493,-464.185	0/1:7:5,2:5:180:2:72:-4.71982,0,-14.4449	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:179:82,97:82:2924:97:3476:-257.394,0,-209.511	0/1:189:74,115:74:2636:115:4109:-311.7,0,-180.463	0/0:67:67,0:67:2379:0:0:0,-20.169,-214.368	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:143:75,68:75:2684:68:2421:-174.633,0,-198.758	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:181:181,0:181:6417:0:0:0,-54.4864,-577.624	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/1:76:41,35:41:1476:35:1256:-90.4046,0,-110.258	0/1:124:61,63:61:2180:63:2264:-165.814,0,-159.139	0/0:198:197,0:197:7000:0:0:0,-59.3029,-629.86	0/0:189:189,0:189:6753:0:0:0,-56.8947,-607.844	0/1:172:83,89:83:2972:89:3183:-234.539,0,-215.08	0/0:262:262,0:262:9357:0:0:0,-78.8699,-842.096	0/1:5:4,1:4:144:1:36:-2.09053,0,-11.8085	0/0:196:196,0:196:6996:0:0:0,-59.0019,-629.706	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:8:2,6:2:72:6:212:-16.9718,0,-4.42848	0/0:171:169,1:169:6008:1:36:0,-47.9415,-536.381	0/1:44:17,27:17:604:27:968:-74.1279,0,-41.4453	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:97:97,0:97:3444:0:0:0,-29.1999,-310.175	0/1:129:68,61:68:2432:61:2191:-158.235,0,-180.303	0/1:13:9,4:9:320:4:140:-9.02303,0,-25.229	0/1:261:112,149:112:3966:149:5344:-402.177,0,-278.563	0/0:188:188,0:188:6689:0:0:0,-56.5936,-602.09	0/1:118:50,68:50:1796:68:2421:-181.814,0,-126.401	0/0:128:127,0:127:4539:0:0:0,-38.2308,-408.466	0/1:210:109,101:109:3900:101:3620:-262.116,0,-287.978	0/0:145:144,1:144:5140:1:36:0,-40.0537,-459.148	0/1:36:14,22:14:496:22:792:-60.538,0,-34.1372	0/0:96:96,0:96:3420:0:0:0,-28.8989,-308.015	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/1:53:27,26:27:926:26:932:-68.1802,0,-67.6931	0/0:122:122,0:122:4336:0:0:0,-36.7257,-390.349	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:95:95,0:95:3368:0:0:0,-28.5978,-303.339	0/1:188:105,83:105:3756:83:2976:-211.283,0,-281.646	0/0:246:246,0:246:8736:0:0:0,-74.0534,-786.241	0/1:168:79,89:79:2812:89:3186:-235.454,0,-202.748	0/1:6:4,2:4:144:2:72:-5.01335,0,-11.5074	0/1:118:51,67:51:1828:67:2397:-180.082,0,-129.279	0/0:169:165,1:165:5892:1:36:0,-46.9274,-526.989	0/0:266:265,0:265:9468:0:0:0,-79.7729,-851.723	0/1:106:50,56:50:1780:56:2016:-149.631,0,-128.574	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/0:79:79,0:79:2816:0:0:0,-23.7814,-253.68	0/1:130:67,63:67:2376:63:2256:-163.06,0,-174.965	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:83:49,34:49:1740:34:1220:-84.1965,0,-131.899	0/1:81:37,44:37:1320:44:1572:-116.769,0,-94.7185	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:123:50,73:50:1756:73:2620:-198.635,0,-121.294	0/1:50:11,39:11:396:39:1396:-110.787,0,-20.9312	0/0:115:115,0:115:4104:0:0:0,-34.6184,-369.547	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315
chr11	19867324	.	A	T	43726.9	PASS	AB=0.519293;ABP=18.9303;AC=40;AF=0.212766;AN=188;AO=2563;CIGAR=1X;DP=11324;DPB=11324;DPRA=1.12089;EPP=5568.49;EPPR=18821.5;GTI=0;LEN=1;MEANALT=1.08889;MQM=54.618;MQMR=59.9797;NS=94;NUMALT=1;ODDS=4.38041;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91754;QR=313373;RO=8754;RPL=0;RPP=5568.49;RPPR=18821.5;RPR=2563;RUN=1;SAF=2563;SAP=5568.49;SAR=0;SRF=8754;SRP=19012.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:167:81,86:81:2896:86:3068:-224.265,0,-210.604	0/0:249:249,0:249:8940:0:0:0,-74.9565,-804.578	0/1:270:128,142:128:4573:142:5077:-374.509,0,-330.456	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:144:144,0:144:5141:0:0:0,-43.3483,-462.831	0/0:169:169,0:169:6056:0:0:0,-50.8741,-545.142	0/1:49:19,30:19:684:30:1080:-82.3299,0,-47.1399	0/0:173:173,0:173:6190:0:0:0,-52.0782,-557.189	0/0:108:107,1:107:3829:1:36:0,-28.913,-341.207	0/1:88:43,44:43:1540:44:1584:-115.946,0,-112.336	0/1:76:44,32:44:1580:32:1152:-80.6576,0,-119.613	0/0:114:114,0:114:4089:0:0:0,-34.3174,-368.193	0/1:90:45,45:45:1620:45:1611:-117.859,0,-118.997	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:120:120,0:120:4316:0:0:0,-36.1236,-388.614	0/1:79:33,46:33:1176:46:1652:-124.501,0,-82.3664	0/1:66:33,33:33:1188:33:1180:-86.1529,0,-87.3606	0/1:306:166,140:166:5948:140:5024:-359.495,0,-443.312	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.941	0/1:151:49,102:49:1756:102:3660:-283.83,0,-112.868	0/1:102:29,72:29:1044:72:2576:-201.156,0,-63.5109	0/0:115:115,0:115:4083:0:0:0,-34.6184,-367.654	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/1:400:227,173:227:8121:173:6197:-436.312,0,-610.303	0/0:240:240,0:240:8605:0:0:0,-72.2472,-773.816	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:456:455,0:455:16256:0:0:0,-136.969,-1462.35	0/1:187:83,104:83:2972:104:3698:-275.781,0,-211.42	0/0:153:153,0:153:5447:0:0:0,-46.0576,-490.356	0/1:7:5,2:5:180:2:72:-4.71982,0,-14.4449	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:181:84,97:84:3016:97:3480:-257.837,0,-217.184	0/1:192:73,119:73:2605:119:4257:-324.382,0,-176.842	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:147:75,72:75:2669:72:2576:-187.222,0,-196.203	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:198:198,0:198:7100:0:0:0,-59.6039,-639.058	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.816	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:79:43,36:43:1529:36:1296:-93.0972,0,-114.12	0/1:126:61,65:61:2184:65:2333:-171.486,0,-158.896	0/0:204:204,0:204:7263:0:0:0,-61.4101,-653.722	0/0:200:200,0:200:7172:0:0:0,-60.206,-645.534	0/1:177:88,89:88:3141:89:3188:-233.377,0,-229.075	0/0:269:269,0:269:9633:0:0:0,-80.9771,-866.92	0/1:7:6,1:6:216:1:36:-1.48847,0,-17.6833	0/0:203:203,0:203:7235:0:0:0,-61.1091,-651.202	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:8:2,6:2:72:6:216:-17.3325,0,-4.42848	0/0:180:179,1:179:6428:1:36:0,-50.5922,-573.823	0/1:44:17,27:17:608:27:968:-74.1279,0,-41.8067	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/1:131:72,59:72:2572:59:2120:-151.247,0,-192.295	0/1:14:10,4:10:360:4:129:-7.70597,0,-28.5299	0/1:271:119,152:119:4246:152:5445:-408.249,0,-300.738	0/0:202:201,1:201:7156:1:36:0,-57.2149,-640.501	0/1:122:52,70:52:1868:70:2478:-185.856,0,-131.674	0/0:127:127,0:127:4553:0:0:0,-38.2308,-409.934	0/1:217:111,104:111:3984:104:3698:-267.305,0,-293.668	0/0:150:148,2:148:5328:2:72:0,-38.3202,-472.816	0/1:39:16,23:16:572:23:828:-62.8688,0,-40.0733	0/0:98:98,0:98:3504:0:0:0,-29.5009,-315.571	0/0:88:88,0:88:3126:0:0:0,-26.4906,-281.564	0/1:55:28,27:28:996:27:968:-70.812,0,-73.3982	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.538	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.671	0/0:98:98,0:98:3501:0:0:0,-29.5009,-315.299	0/1:192:108,83:108:3880:83:2984:-210.884,0,-291.685	0/0:261:261,0:261:9314:0:0:0,-78.5688,-838.224	0/1:173:80,93:80:2872:93:3328:-246.814,0,-206.638	0/1:7:5,2:5:180:2:72:-4.71232,0,-14.4449	0/1:119:52,67:52:1868:67:2412:-181.108,0,-132.577	0/0:180:179,1:179:6390:1:31:0,-51.1643,-572.166	0/0:277:277,0:277:9899:0:0:0,-83.3853,-890.848	0/1:110:55,55:55:1957:55:1976:-144.831,0,-143.29	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.814	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/1:132:68,64:68:2448:64:2283:-165.41,0,-180.838	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:84:52,32:52:1864:32:1140:-76.9448,0,-142.753	0/1:81:36,45:36:1296:45:1620:-121.064,0,-92.5605	0/0:81:81,0:81:2916:0:0:0,-24.3834,-262.674	0/1:129:53,76:53:1908:76:2728:-206.546,0,-133.165	0/1:49:11,38:11:396:38:1353:-107.225,0,-21.2323	0/0:122:122,0:122:4376:0:0:0,-36.7257,-394.013	0/0:110:109,0:109:3920:0:0:0,-32.8123,-352.631
chr11	19867355	.	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chr11	20007859	.	A	T	170413	PASS	AB=0.445636;ABP=141.837;AC=146;AF=0.784946;AN=186;AO=8138;CIGAR=1X;DP=11155;DPB=11155;DPRA=0;EPP=17674.5;EPPR=6539.14;GTI=3;LEN=1;MEANALT=1.07527;MQM=53.9653;MQMR=59.6841;NS=93;NUMALT=1;ODDS=1.30171;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=291233;QR=107619;RO=3010;RPL=0;RPP=17674.5;RPPR=6539.14;RPR=8138;RUN=1;SAF=8138;SAP=17674.5;SAR=0;SRF=3010;SRP=6539.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:856:-77.1726,-7.22472,0	0/1:145:74,70:74:2652:70:2512:-181.135,0,-195.194	1/1:91:0,91:0:0:91:3266:-293.327,-27.3937,0	0/1:189:93,96:93:3317:96:3429:-251.521,0,-241.754	1/1:102:3,99:3:108:99:3536:-307.409,-20.6299,0	1/1:69:0,69:0:0:69:2465:-220.982,-20.7711,0	1/1:132:0,132:0:0:132:4740:-425.978,-39.736,0	1/1:245:0,244:0:0:244:8736:-782.385,-73.4513,0	0/1:112:65,47:65:2313:47:1683:-117.277,0,-174.697	1/1:117:2,115:2:72:115:4116:-362.987,-28.3838,0	1/1:135:0,135:0:0:135:4845:-434.884,-40.6391,0	0/1:107:62,45:62:2228:45:1612:-112.775,0,-167.39	0/1:96:59,37:59:2116:37:1324:-90.0079,0,-161.804	1/1:120:0,120:0:0:120:4308:-386.957,-36.1236,0	0/1:80:46,34:46:1652:34:1224:-86.195,0,-124.883	1/1:75:0,75:0:0:75:2671:-239.581,-22.5773,0	1/1:116:0,116:0:0:116:4159:-373.334,-34.9195,0	0/1:85:46,39:46:1652:39:1385:-98.8101,0,-123.355	0/1:84:47,37:47:1692:37:1332:-94.2021,0,-127.248	0/1:233:117,116:117:4169:116:4152:-303.442,0,-305.212	1/1:129:0,129:0:0:129:4599:-412.598,-38.8329,0	0/1:92:63,29:63:2255:29:1036:-65.8339,0,-175.515	0/1:67:49,18:49:1733:18:625:-36.3663,0,-136.084	1/1:94:0,94:0:0:94:3376:-302.539,-28.2968,0	1/1:62:1,61:1:36:61:2184:-192.888,-15.0656,0	0/1:488:298,190:298:10677:190:6787:-462.604,0,-813.919	1/1:209:1,208:1:36:208:7452:-664.232,-59.317,0	1/1:36:1,35:1:36:35:1260:-109.908,-7.23881,0	1/1:331:0,331:0:0:331:11833:-1063.3,-99.6409,0	0/1:155:69,86:69:2453:86:3076:-229.008,0,-174.359	1/1:118:0,118:0:0:118:4240:-381.378,-35.5215,0	0/1:5:3,2:3:108:2:72:-5.32188,0,-8.57002	1/1:24:0,24:0:0:24:856:-77.1107,-7.22472,0	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	1/1:6:0,6:0:0:6:216:-19.5595,-1.80618,0	1/1:15:0,15:0:0:15:536:-48.4567,-4.51545,0	0/1:284:151,133:151:5412:133:4751:-341.014,0,-401.707	0/1:271:157,113:157:5632:113:4033:-279.523,0,-425.317	1/1:166:0,166:0:0:166:5964:-534.699,-49.971,0	.:.:.:.:.:.:.:.	0/1:166:73,93:73:2597:93:3324:-248.381,0,-183.984	1/1:78:0,78:0:0:78:2804:-251.846,-23.4803,0	1/1:103:0,103:0:0:103:3692:-330.677,-31.0061,0	1/1:104:0,104:0:0:104:3719:-334.202,-31.3071,0	1/1:76:0,76:0:0:76:2732:-244.351,-22.8783,0	0/1:121:92,29:92:3265:29:1032:-56.5689,0,-257.642	0/1:181:95,86:95:3381:86:3068:-220.5,0,-249.78	1/1:188:1,187:1:36:187:6671:-595.954,-53.0268,0	1/1:74:0,74:0:0:74:2644:-237.927,-22.2762,0	0/1:178:78,100:78:2804:100:3557:-266.197,0,-198.999	1/1:129:0,129:0:0:129:4612:-414.901,-38.8329,0	0/1:14:11,3:11:392:3:104:-5.46437,0,-31.3974	1/1:177:2,175:2:72:175:6280:-555.486,-46.4456,0	1/1:52:0,52:0:0:52:1864:-167.98,-15.6536,0	0/1:20:4,16:4:144:16:572:-45.4846,0,-7.29302	1/1:116:0,116:0:0:116:4132:-370.357,-34.9195,0	0/1:73:54,19:54:1944:19:684:-39.7818,0,-153.258	1/1:8:0,8:0:0:8:288:-26.2572,-2.40824,0	1/1:36:0,36:0:0:36:1288:-116.076,-10.8371,0	1/1:104:0,104:0:0:104:3716:-333.546,-31.3071,0	0/1:170:88,81:88:3160:81:2900:-209.571,0,-233.293	0/1:3:2,1:2:72:1:36:-2.69259,0,-5.93363	0/1:215:109,106:109:3916:106:3797:-276.767,0,-287.9	1/1:188:2,186:2:72:186:6634:-589.428,-49.7569,0	0/1:81:25,56:25:881:56:1996:-154.086,0,-55.2224	1/1:82:0,82:0:0:82:2944:-264.475,-24.6845,0	0/1:176:113,63:113:4021:63:2256:-149.979,0,-309.097	1/1:150:0,150:0:0:150:5368:-481.044,-45.1545,0	0/1:121:79,42:79:2813:42:1504:-98.676,0,-216.953	1/1:73:0,73:0:0:73:2605:-232.942,-21.9752,0	1/1:118:0,118:0:0:118:4212:-378.794,-35.5215,0	0/1:45:32,13:32:1148:13:460:-28.0619,0,-90.0793	1/1:126:0,126:0:0:126:4516:-404.79,-37.9298,0	1/1:47:0,47:0:0:47:1668:-149.485,-14.1484,0	1/1:211:0,211:0:0:211:7576:-679.917,-63.5173,0	0/1:196:111,85:111:3961:85:3052:-215.49,0,-297.654	1/1:149:2,147:2:72:147:5276:-466.053,-38.0167,0	0/1:152:66,85:66:2341:85:3022:-225.676,0,-164.973	0/1:8:4,4:4:144:4:144:-10.8719,0,-10.897	0/1:150:70,80:70:2489:80:2868:-212.54,0,-179.096	1/1:139:0,139:0:0:139:4988:-447.603,-41.8432,0	1/1:208:0,208:0:0:208:7452:-669.403,-62.6142,0	0/1:155:84,70:84:3008:70:2512:-179.04,0,-224.126	1/1:87:0,87:0:0:87:3114:-280.007,-26.1896,0	1/1:115:0,115:0:0:115:4124:-370.718,-34.6185,0	0/1:169:96,73:96:3440:73:2599:-182.871,0,-258.909	1/1:57:0,57:0:0:57:2048:-183.947,-17.1587,0	0/1:116:68,48:68:2444:48:1724:-119.909,0,-185.278	0/1:112:60,52:60:2152:52:1864:-133.914,0,-160.199	1/1:110:0,109:0:0:109:3894:-349.055,-32.8123,0	0/1:207:114,93:114:4077:93:3336:-237.058,0,-304.792	0/1:86:66,20:66:2356:20:701:-37.3876,0,-186.39	1/1:109:0,109:0:0:109:3886:-348.955,-32.8123,0	1/1:115:2,113:2:68:113:4055:-357.903,-28.1607,0
chr11	20161096	.	T	C	58.4366	PASS	AB=0.510484;ABP=7.47218;AC=39;AF=0.207447;AN=188;AO=2398;CIGAR=1X;DP=10201;DPB=10201;DPRA=1.25442;EPP=5210.2;EPPR=16942.7;GTI=29;LEN=1;MEANALT=1.04167;MQM=16.1651;MQMR=25.9835;NS=94;NUMALT=1;ODDS=0.219245;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84848;QR=278626;RO=7801;RPL=0;RPP=5210.2;RPPR=16942.7;RPR=2398;RUN=1;SAF=0;SAP=5210.2;SAR=2398;SRF=0;SRP=16942.7;SRR=7801;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:49:49,0:49:1764:0:0:0,-14.7505,-115.517	0/1:149:67,82:67:2395:82:2871:-79.3821,0,-113.432	0/0:148:148,0:148:5286:0:0:0,-44.5524,-345.937	0/1:276:112,164:112:4016:164:5833:-151.839,0,-174.306	0/0:71:71,0:71:2527:0:0:0,-21.3731,-163.381	0/0:55:55,0:55:1972:0:0:0,-16.5566,-128.855	0/0:143:143,0:143:5112:0:0:0,-43.0473,-325.926	0/0:145:145,0:145:5162:0:0:0,-43.6493,-337.252	0/1:120:67,53:67:2382:53:1877:-42.749,0,-120.827	0/0:84:84,0:84:3007:0:0:0,-25.2865,-189.871	0/0:77:77,0:77:2764:0:0:0,-23.1793,-176.119	0/1:64:35,29:35:1256:29:1028:-24.9237,0,-62.3419	0/1:71:39,32:39:1379:32:1139:-28.2794,0,-71.9763	0/0:78:78,0:78:2786:0:0:0,-23.4803,-181.539	0/1:66:32,34:32:1152:34:1207:-29.3529,0,-54.4598	0/0:59:59,0:59:2108:0:0:0,-17.7608,-136.384	0/0:87:87,0:87:3091:0:0:0,-26.1896,-205.906	0/1:62:38,24:38:1351:24:860:-18.3698,0,-68.901	0/1:58:32,26:32:1134:26:920:-22.2471,0,-56.1339	0/1:205:89,116:89:3147:116:4139:-103.544,0,-142.617	0/0:169:169,0:169:6023:0:0:0,-50.8741,-384.732	0/1:146:47,99:47:1684:99:3498:-98.9754,0,-59.8706	0/1:86:45,41:45:1620:41:1472:-32.6123,0,-78.043	0/0:142:142,0:142:5073:0:0:0,-42.7463,-324.422	0/0:111:109,2:109:3891:2:72:0,-30.3823,-246.726	0/1:261:143,118:143:5107:118:4219:-90.831,0,-238.571	0/0:181:180,1:180:6429:1:36:0,-52.8906,-411.599	0/0:33:33,0:33:1184:0:0:0,-9.93399,-76.1973	0/0:294:294,0:294:10525:0:0:0,-88.5028,-652.69	0/1:166:89,77:89:3184:77:2709:-61.5891,0,-154.059	0/0:85:85,0:85:3056:0:0:0,-25.5875,-195.47	0/1:8:4,4:4:144:4:140:-3.58031,0,-7.05897	0/0:36:36,0:36:1292:0:0:0,-10.8371,-83.3895	0/0:2:2,0:2:72:0:0:0,-0.60206,-4.77102	0/0:5:5,0:5:171:0:0:0,-1.50515,-11.9543	0/0:18:18,0:18:648:0:0:0,-5.41854,-43.1722	0/1:228:111,117:111:3963:117:4117:-99.296,0,-177.475	0/1:147:77,70:77:2742:70:2460:-55.4564,0,-132.593	0/0:79:79,0:79:2820:0:0:0,-23.7814,-185.794	0/0:8:8,0:8:284:0:0:0,-2.40824,-18.1081	0/1:401:233,167:233:8332:167:5938:-118.942,0,-413.787	0/0:51:51,0:51:1804:0:0:0,-15.3525,-117.452	0/0:124:123,1:123:4387:1:36:0,-35.7319,-281.727	0/0:90:90,0:90:3224:0:0:0,-27.0927,-206.27	0/0:69:69,0:69:2434:0:0:0,-20.7711,-156.531	0/1:101:55,46:55:1959:46:1640:-36.1544,0,-91.7219	0/1:136:68,68:68:2412:68:2413:-62.1373,0,-118.863	0/0:185:185,0:185:6612:0:0:0,-55.6905,-420.43	0/0:132:132,0:132:4727:0:0:0,-39.736,-303.331	0/1:140:56,84:56:2003:84:2990:-77.8825,0,-86.5054	0/0:171:171,0:171:6125:0:0:0,-51.4761,-377.158	0/0:4:4,0:4:140:0:0:0,-1.20412,-9.09735	0/0:285:285,0:285:10189:0:0:0,-85.7935,-675.385	0/0:69:69,0:69:2464:0:0:0,-20.7711,-153.774	0/1:23:12,11:12:428:11:392:-9.65431,0,-21.6347	0/0:137:137,0:137:4912:0:0:0,-41.2411,-313.242	0/1:49:26,23:26:936:23:809:-18.3345,0,-43.8353	0/0:10:10,0:10:356:0:0:0,-3.0103,-22.3223	0/0:13:13,0:13:468:0:0:0,-3.91339,-29.9715	0/0:85:84,1:84:2999:1:36:0,-23.9918,-191.074	0/1:130:59,71:59:2108:71:2503:-62.7263,0,-95.0007	0/1:14:6,8:6:216:8:284:-7.42908,0,-9.85847	0/1:175:67,108:67:2391:108:3867:-102.635,0,-96.6667	0/0:197:196,1:196:6990:1:36:0,-57.7071,-447.374	0/1:99:54,45:54:1917:45:1586:-35.1811,0,-93.0982	0/0:70:70,0:70:2494:0:0:0,-21.0721,-159.601	0/1:150:66,84:66:2363:84:2992:-76.4007,0,-106.248	0/0:132:129,3:129:4611:3:108:0,-35.2678,-291.875	0/1:39:18,21:18:640:21:731:-18.0796,0,-30.3059	0/0:67:67,0:67:2390:0:0:0,-20.169,-158.594	0/0:76:76,0:76:2719:0:0:0,-22.8783,-168.122	0/1:32:16,16:16:572:16:555:-13.7313,0,-27.4177	0/0:141:140,1:140:5002:1:36:0,-40.7506,-327.08	0/0:81:81,0:81:2878:0:0:0,-24.3834,-190.541	0/0:228:228,0:228:8120:0:0:0,-68.6348,-520.393	0/1:214:76,137:76:2728:137:4773:-132.371,0,-109.744	0/0:145:145,0:145:5152:0:0:0,-43.6493,-342.005	0/1:108:50,58:50:1800:58:2054:-54.078,0,-84.8624	0/1:18:6,12:6:212:12:432:-12.6026,0,-9.45879	0/1:157:77,80:77:2760:80:2840:-67.7327,0,-129.374	0/0:102:102,0:102:3647:0:0:0,-30.7051,-241.969	0/0:232:232,0:232:8265:0:0:0,-69.839,-532.115	0/1:85:52,33:52:1872:33:1150:-21.8876,0,-95.3907	0/0:59:59,0:59:2103:0:0:0,-17.7608,-135.264	0/0:105:105,0:105:3756:0:0:0,-31.6081,-240.48	0/1:146:78,68:78:2769:68:2372:-54.5551,0,-136.176	0/0:55:54,1:54:1926:1:32:0,-14.8699,-123.711	0/1:73:39,34:39:1392:34:1184:-29.4183,0,-70.7702	0/1:73:50,23:50:1796:23:812:-13.2454,0,-97.3082	0/0:53:53,0:53:1892:0:0:0,-15.9546,-122.633	0/1:141:73,68:73:2620:68:2387:-55.5397,0,-124.354	0/1:57:22,35:22:783:35:1227:-33.4756,0,-33.8487	0/0:83:82,1:82:2928:1:36:0,-23.3897,-185.34	0/0:117:117,0:117:4200:0:0:0,-35.2205,-270.766
chr11	20161724	.	C	T	86583.7	PASS	AB=0.517034;ABP=21.4305;AC=40;AF=0.212766;AN=188;AO=3791;CIGAR=1X;DP=16941;DPB=16941;DPRA=1.17984;EPP=8226.38;EPPR=28525.3;GTI=0;LEN=1;MEANALT=1.04167;MQM=59.9937;MQMR=59.9946;NS=94;NUMALT=1;ODDS=0.469228;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135260;QR=464392;RO=13139;RPL=1474;RPP=410.068;RPPR=1557.61;RPR=2317;RUN=1;SAF=1473;SAP=412.001;SAR=2318;SRF=5035;SRP=1559.64;SRR=8104;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:77:77,0:77:2723:0:0:0,-23.1793,-245.312	0/1:276:135,141:135:4745:141:5014:-368.323,0,-344.127	0/0:249:249,0:249:8758:0:0:0,-74.9565,-788.218	0/1:443:211,232:211:7458:232:8288:-612.573,0,-537.912	0/0:137:136,1:136:4861:1:32:0,-38.0418,-434.443	0/0:104:103,0:103:3679:0:0:0,-31.0061,-330.764	0/0:238:238,0:238:8473:0:0:0,-71.6451,-762.574	0/0:317:317,0:317:11176:0:0:0,-95.4265,-1005.74	0/1:201:90,111:90:3162:111:3960:-296.084,0,-224.298	0/0:193:193,0:193:6843:0:0:0,-58.0988,-615.943	0/0:149:148,0:148:5241:0:0:0,-44.5524,-471.509	0/1:163:99,64:99:3479:64:2266:-155.134,0,-264.256	0/1:141:60,81:60:2132:81:2893:-218.16,0,-149.703	0/0:96:95,0:95:3302:0:0:0,-28.5978,-297.041	0/1:138:63,75:63:2223:75:2665:-198.551,0,-158.793	0/0:104:104,0:104:3661:0:0:0,-31.3071,-329.695	0/0:162:162,0:162:5695:0:0:0,-48.7669,-512.675	0/1:142:62,80:62:2153:80:2863:-215.16,0,-151.288	0/1:116:58,58:58:2055:58:2072:-151.831,0,-150.302	0/1:369:167,202:167:5925:202:7205:-537.425,0,-422.283	0/0:318:317,0:317:11176:0:0:0,-95.4265,-1005.38	0/1:112:25,87:25:892:87:3101:-245.601,0,-46.8843	0/1:136:50,86:50:1788:86:3088:-237.207,0,-120.263	0/0:204:204,0:204:7230:0:0:0,-61.4101,-650.757	0/0:133:133,0:133:4703:0:0:0,-40.037,-423.433	0/1:468:236,232:236:8364:232:8282:-604.505,0,-611.888	0/0:510:510,0:510:18015:0:0:0,-153.525,-1620.97	0/0:87:87,0:87:3055:0:0:0,-26.1896,-275.18	0/0:569:568,1:568:20151:1:36:0,-167.688,-1809.52	0/1:140:64,76:64:2255:76:2718:-202.718,0,-161.067	0/0:209:209,0:209:7407:0:0:0,-62.9153,-666.681	0/1:7:6,1:6:203:1:36:-1.49107,0,-16.494	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.6656	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:352:176,175:176:6164:175:6232:-454.955,0,-448.847	0/1:169:91,78:91:3208:78:2787:-200.196,0,-238.067	0/0:171:171,0:171:5972:0:0:0,-51.4761,-537.595	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:244:118,126:118:4198:126:4464:-328.48,0,-304.549	0/0:112:111,1:111:3954:1:36:0,-30.1171,-352.454	0/0:222:222,0:222:7840:0:0:0,-66.8287,-705.635	0/0:176:176,0:176:6148:0:0:0,-52.9813,-553.428	0/0:170:170,0:170:5951:0:0:0,-51.1751,-535.701	0/1:174:79,95:79:2827:95:3389:-252.846,0,-202.289	0/1:273:139,134:139:4927:134:4772:-347.456,0,-361.399	0/0:305:305,0:305:10834:0:0:0,-91.8141,-974.966	0/0:159:158,0:158:5605:0:0:0,-47.5627,-504.214	0/1:212:111,101:111:3930:101:3575:-258.132,0,-290.074	0/0:268:268,0:268:9479:0:0:0,-80.676,-853.075	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/0:307:306,0:306:10898:0:0:0,-92.1152,-980.362	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/0:156:156,0:156:5512:0:0:0,-46.9607,-496.207	0/1:108:43,65:43:1529:65:2321:-176.638,0,-105.39	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:40:40,0:40:1406:0:0:0,-12.0412,-126.836	0/0:179:178,0:178:6299:0:0:0,-53.5833,-566.796	0/1:182:88,94:88:3082:94:3352:-247.108,0,-222.819	0/1:24:15,9:15:540:9:320:-21.9176,0,-41.7118	0/1:247:123,124:123:4394:124:4415:-323.168,0,-321.278	0/0:296:292,4:292:10319:4:144:0,-75.7913,-915.329	0/1:111:54,57:54:1900:57:2024:-149.017,0,-137.861	0/0:162:162,0:162:5736:0:0:0,-48.7669,-516.359	0/1:288:141,147:141:5043:147:5255:-386.39,0,-367.319	0/0:206:204,2:204:7237:2:72:0,-55.1755,-644.551	0/1:67:35,32:35:1226:32:1152:-83.8211,0,-90.4732	0/0:160:159,0:159:5603:0:0:0,-47.8638,-504.032	0/0:150:150,0:150:5304:0:0:0,-45.1545,-477.497	0/1:40:11,29:11:392:29:1040:-81.8732,0,-23.5789	0/0:197:197,0:197:6907:0:0:0,-59.3029,-621.703	0/0:129:128,1:128:4525:1:36:0,-35.2346,-403.823	0/0:298:298,0:298:10575:0:0:0,-89.7069,-951.669	0/1:340:170,170:170:6026:170:6074:-444.412,0,-440.095	0/0:231:231,0:231:8238:0:0:0,-69.5379,-741.432	0/1:207:89,118:89:3161:118:4224:-318.027,0,-222.401	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:272:141,131:141:4992:131:4672:-338.76,0,-365.298	0/0:223:223,0:223:7857:0:0:0,-67.1297,-707.165	0/0:496:494,1:494:17460:1:36:0,-145.751,-1567.46	0/1:184:104,80:104:3633:80:2868:-202.967,0,-271.786	0/0:135:134,0:134:4680:0:0:0,-40.338,-421.004	0/0:185:185,0:185:6565:0:0:0,-55.6905,-590.935	0/1:295:159,136:159:5601:136:4867:-349.379,0,-415.415	0/0:96:96,0:96:3391:0:0:0,-28.8989,-305.406	0/1:179:96,83:96:3361:83:2955:-212.3,0,-248.826	0/1:110:56,54:56:1911:54:1939:-141.673,0,-139.147	0/0:99:99,0:99:3486:0:0:0,-29.802,-313.955	0/1:179:90,89:90:3182:89:3175:-232.09,0,-232.721	0/1:160:51,109:51:1790:109:3897:-302.758,0,-113.216	0/0:94:93,1:93:3303:1:36:0,-24.6985,-293.892	0/0:220:220,0:220:7727:0:0:0,-66.2266,-695.47
chr11	20177033	.	TA	AC,TC	97386.3	PASS	AB=0.524748,0.473938;ABP=15.1555,16.4795;AC=145,39;AF=0.788043,0.211957;AN=184;AO=3640,1085;CIGAR=2X,1M1X;DP=4736;DPB=4736;DPRA=0,1.27265;EPP=7907.17,2359.06;EPPR=7.35324;GTI=1;LEN=2,1;MEANALT=1.54348,2.02381;MQM=50.7291,59.5014;MQMR=54;NS=92;NUMALT=2;ODDS=0.39605;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=125921,38672;QR=72;RO=2;RPL=3639,1085;RPP=7898.49,2359.06;RPPR=7.35324;RPR=1,0;RUN=1,1;SAF=3639,1085;SAP=7898.49,2359.06;SAR=1,0;SRF=2;SRP=7.35324;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14,0:0:0:14,0:470,0:-42.4319,-4.21442,0,-42.4319,-4.21442,-42.4319	1/2:48:0,33,15:0:0:33,15:1132,540:-134.888,-44.4211,-34.4871,-90.8195,0,-86.304	1/1:34:0,33,0:0:0:33,0:1119,0:-100.039,-9.93399,0,-100.039,-9.93399,-100.039	1/2:106:0,53,53:0:0:53,53:1893,1881:-307.204,-153.602,-137.647,-153.957,0,-138.003	1/1:22:0,22,0:0:0:22,0:779,0:-69.3909,-6.62266,0,-69.3909,-6.62266,-69.3909	1/1:20:0,20,0:0:0:20,0:701,0:-61.8859,-6.0206,0,-61.8859,-6.0206,-61.8859	1/1:34:0,33,0:0:0:33,0:1180,0:-105.661,-9.93399,0,-105.661,-9.93399,-105.661	1/1:71:0,71,0:0:0:71,0:2434,0:-215.971,-21.3731,0,-215.971,-21.3731,-215.971	1/2:66:0,40,26:0:0:40,26:1378,932:-186.365,-76.2719,-64.2307,-110.443,0,-102.616	1/1:42:0,42,0:0:0:42,0:1459,0:-130.969,-12.6433,0,-130.969,-12.6433,-130.969	1/1:32:0,32,0:0:0:32,0:1100,0:-99.1115,-9.63296,0,-99.1115,-9.63296,-99.1115	1/2:50:0,22,28:0:0:22,28:773,996:-144.084,-81.526,-74.9034,-62.9099,0,-54.4811	1/2:57:0,33,24:0:0:33,24:1126,855:-160.921,-70.0455,-60.1115,-91.2251,0,-84.0004	1/1:51:0,51,0:0:0:51,0:1802,0:-161.881,-15.3525,0,-161.881,-15.3525,-161.881	1/2:47:0,17,30:0:0:17,30:587,1076:-135.674,-88.1096,-82.9921,-47.9137,0,-38.8828	1/1:33:0,33,0:0:0:33,0:1144,0:-102.286,-9.93399,0,-102.286,-9.93399,-102.286	1/1:42:0,42,0:0:0:42,0:1429,0:-128.008,-12.6433,0,-128.008,-12.6433,-128.008	1/2:33:0,19,14:0:0:19,14:670,504:-95.382,-41.4837,-35.7641,-54.2534,0,-50.039	1/2:28:0,13,15:0:0:13,15:427,536:-78.3822,-44.0594,-40.146,-34.6638,0,-30.1484	1/2:85:0,48,37:0:0:48,37:1633,1298:-238.123,-105.903,-91.4537,-132.566,0,-121.428	1/1:88:0,88,0:0:0:88,0:3045,0:-272.928,-26.4906,0,-272.928,-26.4906,-272.928	1/2:84:0,36,48:0:0:36,48:1247,1692:-238.817,-138.107,-127.27,-101.058,0,-86.6084	1/2:31:0,10,21:0:0:10,21:349,756:-90.3781,-62.0456,-59.0353,-28.6846,0,-22.3629	1/1:57:0,57,0:0:0:57,0:2032,0:-181.897,-17.1587,0,-181.897,-17.1587,-181.897	1/1:25:0,25,0:0:0:25,0:826,0:-74.3327,-7.52575,0,-74.3327,-7.52575,-74.3327	1/2:148:0,79,69:0:0:79,69:2707,2430:-417.185,-198.15,-174.368,-219.382,0,-198.611	1/1:105:0,105,0:0:0:105,0:3641,0:-325.737,-31.6082,0,-325.737,-31.6082,-325.737	1/1:26:0,26,0:0:0:26,0:899,0:-80.0155,-7.82678,0,-80.0155,-7.82678,-80.0155	1/1:138:0,138,0:0:0:138,0:4795,0:-428.969,-41.5421,0,-428.969,-41.5421,-428.969	1/2:52:0,28,24:0:0:28,24:993,855:-148.2,-70.0014,-61.5726,-78.5487,0,-71.324	1/1:55:0,55,0:0:0:55,0:1915,0:-170.463,-16.5567,0,-170.463,-16.5567,-170.463	1/2:6:0,2,4:0:0:2,4:72,144:-17.7316,-12.0986,-11.4965,-5.98394,0,-4.77982	1/1:1:0,1,0:0:0:1,0:34,0:-3.39142,-0.30103,0,-3.39142,-0.30103,-3.39142	1/1:2:0,2,0:0:0:2,0:72,0:-6.48368,-0.60206,0,-6.48368,-0.60206,-6.48368	1/1:5:0,5,0:0:0:5,0:156,0:-14.0474,-1.50515,0,-14.0474,-1.50515,-14.0474	1/1:11:0,11,0:0:0:11,0:359,0:-32.4913,-3.31133,0,-32.4913,-3.31133,-32.4913	1/2:131:1,64,66:1:36:64,66:2245,2360:-371.217,-189.479,-173.147,-179.099,0,-162.165	1/2:94:0,57,37:0:0:57,37:1918,1309:-261.043,-106.925,-89.7659,-154.464,0,-143.326	1/1:38:0,37,1:0:0:37,1:1278,36:-114.277,-11.1381,0,-111.357,-7.86037,-111.056	.:.:.:.:.:.:.:.	1/2:53:0,17,36:0:0:17,36:579,1288:-152.142,-105.355,-100.237,-47.1323,0,-36.2952	1/1:42:0,42,0:0:0:42,0:1487,0:-132.861,-12.6433,0,-132.861,-12.6433,-132.861	1/1:55:0,55,0:0:0:55,0:1860,0:-166.854,-16.5567,0,-166.854,-16.5567,-166.854	1/1:41:0,41,0:0:0:41,0:1412,0:-127.151,-12.3422,0,-127.151,-12.3422,-127.151	1/1:47:0,47,0:0:0:47,0:1644,0:-147.665,-14.1484,0,-147.665,-14.1484,-147.665	1/2:35:0,14,21:0:0:14,21:482,752:-100.78,-61.6813,-57.4669,-39.4479,0,-33.1262	1/2:53:0,33,20:0:0:33,20:1145,711:-150.426,-58.2774,-48.3434,-92.4999,0,-86.4793	1/1:82:0,82,0:0:0:82,0:2840,0:-254.988,-24.6845,0,-254.988,-24.6845,-254.988	1/1:78:0,75,0:0:0:75,0:2609,0:-233.243,-22.5773,0,-233.243,-22.5773,-233.243	1/2:81:0,44,37:0:0:44,37:1503,1328:-229.804,-108.684,-95.4388,-121.47,0,-110.332	1/1:59:0,59,0:0:0:59,0:2106,0:-188.921,-17.7608,0,-188.921,-17.7608,-188.921	1/2:14:0,10,4:0:0:10,4:331,140:-38.4465,-11.7405,-8.73016,-27.0503,0,-25.8462	1/1:54:0,54,0:0:0:54,0:1833,0:-163.301,-16.2556,0,-163.301,-16.2556,-163.301	1/1:30:0,30,0:0:0:30,0:1041,0:-93.8059,-9.0309,0,-93.8059,-9.0309,-93.8059	1/2:5:0,4,1:0:0:4,1:142,36:-13.9651,-3.29724,-2.09312,-11.0218,0,-10.7208	1/1:82:0,81,0:0:0:81,0:2757,0:-245.543,-24.3834,0,-245.543,-24.3834,-245.543	1/2:17:0,8,9:0:0:8,9:266,320:-47.7925,-26.4331,-24.0248,-21.7015,0,-18.9922	1/1:8:0,8,0:0:0:8,0:286,0:-26.0597,-2.40824,0,-26.0597,-2.40824,-26.0597	1/1:15:0,15,0:0:0:15,0:5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chr11	20250005	.	A	G	30137.2	PASS	AB=0.505816;ABP=3.79333;AC=38;AF=0.202128;AN=188;AO=1359;CIGAR=1X;DP=5682;DPB=5682;DPRA=1.50636;EPP=123.847;EPPR=3.66174;GTI=2;LEN=1;MEANALT=1.04444;MQM=60;MQMR=59.9838;NS=94;NUMALT=1;ODDS=0.324215;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48237;QR=154734;RO=4320;RPL=817;RPP=123.847;RPPR=3.66174;RPR=542;RUN=1;SAF=0;SAP=2954.04;SAR=1359;SRF=0;SRP=9383.77;SRR=4320;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:63:62,1:62:2224:1:36:0,-15.3666,-196.826	0/1:44:14,30:14:504:30:1064:-82.8263,0,-32.4528	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:124:66,58:66:2367:58:2054:-147.803,0,-175.96	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:69:37,32:37:1332:32:1135:-81.687,0,-99.4113	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/1:100:44,56:44:1572:56:1999:-150.08,0,-111.669	0/1:61:28,33:28:1008:33:1184:-88.5055,0,-72.6735	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:65:38,27:38:1364:27:951:-66.3374,0,-103.494	0/0:56:55,0:55:1980:0:0:0,-16.5566,-178.115	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:43:24,19:24:864:19:669:-47.5897,0,-65.1383	0/1:28:12,16:12:417:16:565:-42.7507,0,-29.4314	0/1:89:47,42:47:1688:42:1495:-108.052,0,-125.415	0/0:141:140,1:140:5021:1:36:0,-38.847,-448.418	0/1:57:14,43:14:500:43:1527:-120.564,0,-28.1775	0/1:67:42,25:42:1504:25:892:-60.4307,0,-115.486	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:135:56,79:56:2008:79:2819:-213.31,0,-140.354	0/0:100:99,1:99:3544:1:36:0,-26.5047,-315.571	0/0:45:45,0:45:1596:0:0:0,-13.5463,-143.927	0/0:141:141,0:141:5033:0:0:0,-42.4452,-453.116	0/1:85:41,44:41:1472:44:1552:-114.382,0,-107.189	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/1:213:116,97:116:4168:97:3457:-247.222,0,-311.182	0/1:92:45,47:45:1620:47:1676:-123.432,0,-118.395	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:53:33,20:33:1167:20:693:-46.736,0,-89.3818	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:59:58,1:58:2088:1:36:0,-14.1625,-184.592	0/0:62:62,0:62:2217:0:0:0,-18.6639,-199.793	0/1:13:5,8:5:176:8:280:-21.6259,0,-12.2716	0/1:54:29,25:29:1040:25:896:-64.7047,0,-77.6587	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.156	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:87:38,49:38:1356:49:1760:-132.494,0,-96.1509	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/1:14:12,2:12:424:2:72:-2.6223,0,-34.282	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/1:39:24,15:24:860:15:536:-36.8346,0,-65.9817	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.449	0/1:99:55,44:55:1953:44:1544:-109.446,0,-146.242	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:155:71,84:71:2552:84:3016:-225.011,0,-183.27	0/0:122:117,5:117:4183:5:180:0,-20.1736,-360.1	0/1:42:22,20:22:792:20:720:-52.4855,0,-58.9578	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/1:122:56,66:56:2012:66:2348:-174.853,0,-144.627	0/0:126:126,0:126:4520:0:0:0,-37.9298,-406.967	0/1:40:18,22:18:648:22:753:-56.0422,0,-46.6107	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.567	0/0:36:35,1:35:1236:1:36:0,-7.2388,-107.943	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/0:112:111,1:111:3988:1:36:0,-30.1171,-355.51	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:100:52,47:52:1868:47:1667:-120.155,0,-138.237	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:62:21,41:21:756:41:1448:-111.952,0,-49.7034	0/1:12:10,2:10:356:2:63:-2.3708,0,-28.7689	0/1:67:37,30:37:1332:30:1072:-76.6234,0,-100.013	0/0:64:64,0:64:2282:0:0:0,-19.2659,-205.641	0/0:95:95,0:95:3394:0:0:0,-28.5978,-305.674	0/1:50:28,22:28:1000:22:792:-56.5542,0,-75.2639	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:130:65,65:65:2336:65:2282:-166.505,0,-171.365	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/1:65:29,36:29:1020:36:1277:-95.6642,0,-72.5452	0/0:58:58,0:58:2079:0:0:0,-17.4597,-187.38	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:88:49,38:49:1742:38:1295:-90.4467,0,-130.67	0/1:74:25,49:25:900:49:1756:-136.048,0,-59.0448	0/0:75:75,0:75:2668:0:0:0,-22.5772,-240.364	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.727
chr11	20276387	.	GCCCC	ACCCT,ACCCC	128612	PASS	AB=0.45916,0.535308;ABP=47.5287,36.2848;AC=147,41;AF=0.781915,0.218085;AN=188;AO=4408,1737;CIGAR=1X3M1X,1X4M;DP=6175;DPB=6175.2;DPRA=6.02542,1.54793;EPP=9566.18,3774.86;EPPR=11.6962;GTI=6;LEN=5,1;MEANALT=1.72043,2.35556;MQM=59.9619,59.9321;MQMR=60;NS=94;NUMALT=2;ODDS=0.245014;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=155693,60405;QR=144;RO=4;RPL=4408,1737;RPP=9574.86,3774.86;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=1,0;SAP=9566.18,3774.86;SAR=4407,1737;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7,0:0:0:7,0:235,0:-21.477,-2.10721,0,-21.477,-2.10721,-21.477	1/2:98:0,36,62:0:0:36,62:1272,2133:-277.162,-173.567,-162.73,-103.944,0,-85.2806	1/1:44:0,44,0:0:0:44,0:1549,0:-139.701,-13.2453,0,-139.701,-13.2453,-139.701	1/2:134:0,62,68:0:0:62,68:2176,2309:-364.343,-187.247,-168.584,-177.096,0,-156.626	1/1:10:0,10,0:0:0:10,0:353,0:-32.1088,-3.0103,0,-32.1088,-3.0103,-32.1088	1/1:16:0,16,0:0:0:16,0:560,0:-50.7141,-4.81648,0,-50.7141,-4.81648,-50.7141	1/1:44:0,44,0:0:0:44,0:1564,0:-141.052,-13.2453,0,-141.052,-13.2453,-141.052	1/1:76:0,74,0:0:0:74,0:2607,0:-234.597,-22.2762,0,-234.597,-22.2762,-234.597	1/2:17:0,7,10:0:0:7,10:246,356:-49.3927,-29.3709,-27.2637,-20.3749,0,-17.3646	1/1:113:0,113,0:0:0:113,0:3955,0:-356.145,-34.0164,0,-356.145,-34.0164,-356.145	1/1:92:0,92,0:0:0:92,0:3266,0:-294.161,-27.6948,0,-294.161,-27.6948,-294.161	1/2:60:0,32,27:0:0:32,27:1136,951:-169.979,-77.4169,-67.784,-92.5564,0,-84.4286	1/2:57:0,27,30:0:0:27,30:960,1034:-162.572,-84.3338,-76.206,-78.5886,0,-69.5577	1/1:101:0,101,0:0:0:101,0:3576,0:-322.049,-30.404,0,-322.049,-30.404,-322.049	1/2:57:0,24,33:0:0:24,33:861,1146:-163.742,-93.5077,-86.283,-70.5876,0,-60.6536	1/1:65:0,65,0:0:0:65,0:2290,0:-206.361,-19.567,0,-206.361,-19.567,-206.361	1/1:98:1,97,0:1:36:97,0:3418,0:-304.239,-25.9027,0,-304.54,-29.1999,-307.478	1/2:66:0,37,29:0:0:37,29:1319,1028:-191.622,-84.1032,-72.9651,-107.874,0,-99.1437	1/2:27:0,11,16:0:0:11,16:389,564:-77.9576,-46.2738,-42.9625,-32.0368,0,-27.2203	1/2:84:0,31,52:0:0:31,52:1097,1806:-236.149,-146.805,-137.473,-89.3359,0,-73.6824	1/1:110:0,110,0:0:0:110,0:3903,0:-351.467,-33.1133,0,-351.467,-33.1133,-351.467	2/2:78:1,7,70:1:36:7,70:250,2405:-213.107,-193.024,-193.855,-18.1343,-0.692031,0	1/2:11:0,3,8:0:0:3,8:108,280:-31.9459,-23.1309,-22.2278,-9.17208,0,-6.76384	1/1:48:0,48,0:0:0:48,0:1701,0:-153.376,-14.4494,0,-153.376,-14.4494,-153.376	1/1:18:0,18,0:0:0:18,0:637,0:-57.6584,-5.41854,0,-57.6584,-5.41854,-57.6584	1/2:224:0,107,117:0:0:107,117:3774,4075:-639.018,-331.718,-299.508,-307.651,0,-272.431	1/1:107:0,107,0:0:0:107,0:3806,0:-342.739,-32.2102,0,-342.739,-32.2102,-342.739	1/1:32:0,32,0:0:0:32,0:1135,0:-102.458,-9.63296,0,-102.458,-9.63296,-102.458	1/1:72:0,72,0:0:0:72,0:2557,0:-230.38,-21.6742,0,-230.38,-21.6742,-230.38	1/2:190:0,78,112:0:0:78,112:2742,3863:-537.188,-313.992,-290.512,-223.545,0,-189.829	1/1:49:0,49,0:0:0:49,0:1717,0:-154.814,-14.7505,0,-154.814,-14.7505,-154.814	1/2:8:0,3,5:0:0:3,5:107,176:-23.4042,-14.6799,-13.7768,-9.07908,0,-7.57393	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:7:0,6,0:0:0:6,0:206,0:-18.5694,-1.80618,0,-18.5694,-1.80618,-18.5694	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:169:1,97,70:1:36:97,70:3403,2439:-472.029,-195.393,-169.131,-273.989,0,-255.855	1/2:163:0,61,101:0:0:61,101:2141,3496:-458.336,-284.09,-265.727,-174.235,0,-143.831	1/1:80:0,78,1:0:0:78,1:2754,36:-247.786,-23.4803,0,-244.849,-20.498,-244.548	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:106:0,54,52:0:0:54,52:1903,1819:-303.27,-148.332,-132.076,-155.29,0,-139.636	1/1:54:0,54,0:0:0:54,0:1930,0:-173.976,-16.2556,0,-173.976,-16.2556,-173.976	1/1:41:0,41,0:0:0:41,0:1462,0:-131.876,-12.3422,0,-131.876,-12.3422,-131.876	1/1:63:0,63,0:0:0:63,0:2220,0:-200.005,-18.9649,0,-200.005,-18.9649,-200.005	1/1:55:0,55,0:0:0:55,0:1940,0:-174.875,-16.5567,0,-174.875,-16.5567,-174.875	1/2:34:0,19,15:0:0:19,15:675,521:-97.7084,-42.7009,-36.9813,-55.3582,0,-50.8427	1/2:95:0,33,62:0:0:33,62:1169,2147:-270.032,-174.829,-164.895,-95.5542,0,-76.8903	1/1:82:0,78,3:0:0:78,3:2744,108:-246.868,-23.4803,0,-238.055,-14.5782,-237.152	1/1:47:0,47,0:0:0:47,0:1679,0:-151.396,-14.1484,0,-151.396,-14.1484,-151.396	1/2:106:0,40,66:0:0:40,66:1413,2294:-301.921,-186.848,-174.807,-115.424,0,-95.5563	1/1:78:0,77,1:0:0:77,1:2719,36:-244.595,-23.1793,0,-241.657,-19.8821,-241.356	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:67:0,67,0:0:0:67,0:2374,0:-213.918,-20.169,0,-213.918,-20.169,-213.918	1/1:39:0,39,0:0:0:39,0:1375,0:-124.049,-11.7402,0,-124.049,-11.7402,-124.049	1/2:26:0,10,16:0:0:10,16:354,538:-72.762,-43.9197,-40.9094,-29.1894,0,-24.3729	1/1:61:0,61,0:0:0:61,0:2160,0:-194.667,-18.3628,0,-194.667,-18.3628,-194.667	1/2:12:0,7,5:0:0:7,5:238,172:-33.6148,-14.3128,-12.2056,-19.6442,0,-18.139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chr11	20405250	.	T	G	22141.6	PASS	AB=0.496433;ABP=3.30467;AC=41;AF=0.22043;AN=186;AO=1328;CIGAR=1X;DP=6228;DPB=6228;DPRA=1.01981;EPP=2878.05;EPPR=10496;GTI=1;LEN=1;MEANALT=1.02326;MQM=59.6393;MQMR=59.9469;NS=93;NUMALT=1;ODDS=5.58315;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47493;QR=175277;RO=4896;RPL=0;RPP=2886.73;RPPR=10496;RPR=1328;RUN=1;SAF=1327;SAP=2878.05;SAR=1;SRF=4896;SRP=10634.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:69:27,42:27:972:42:1481:-112.795,0,-67.0268	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.03	0/1:73:37,36:37:1332:36:1280:-93.5265,0,-98.2072	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:25:24,0:24:856:0:0:0,-7.22472,-77.0014	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/0:80:80,0:80:2848:0:0:0,-24.0824,-256.559	0/1:69:32,37:32:1139:37:1332:-99.4031,0,-81.9912	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:114:114,0:114:4091:0:0:0,-34.3174,-368.374	0/1:75:41,34:41:1476:34:1212:-86.7846,0,-110.559	0/1:77:46,31:46:1629:31:1116:-77.111,0,-123.716	0/0:145:145,0:145:5195:0:0:0,-43.6493,-467.683	0/1:69:38,31:38:1364:31:1116:-79.9607,0,-102.29	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.151	0/1:64:31,33:31:1108:33:1188:-87.9292,0,-80.7651	0/1:67:38,29:38:1368:29:1032:-73.0245,0,-103.252	0/1:93:60,33:60:2133:33:1180:-78.5123,0,-164.241	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/1:58:27,31:27:964:31:1103:-82.0393,0,-69.6171	0/1:21:8,13:8:288:13:468:-36.1298,0,-19.9458	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.3	0/1:139:61,76:61:2180:76:2711:-202.632,0,-153.816	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.751	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:138:138,0:138:4921:0:0:0,-41.5421,-443.041	0/1:82:34,48:34:1216:48:1702:-128.774,0,-85.0621	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:189:91,98:91:3260:98:3512:-259.319,0,-236.725	0/1:79:38,41:38:1356:41:1468:-108.629,0,-98.5591	0/0:110:110,0:110:3940:0:0:0,-33.1133,-354.792	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:68:35,33:35:1252:33:1184:-86.3937,0,-92.5095	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:112:112,0:112:3995:0:0:0,-33.7154,-359.684	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.498	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.511	0/1:63:21,42:21:752:42:1504:-116.688,0,-49.0414	0/1:54:16,38:16:568:38:1360:-106.429,0,-35.1962	0/0:100:100,0:100:3583:0:0:0,-30.103,-322.676	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.222	0/1:59:26,33:26:932:33:1184:-89.1029,0,-66.4381	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:52:52,0:52:1863:0:0:0,-15.6536,-167.949	0/1:24:11,13:11:387:13:464:-34.8728,0,-27.9412	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:95:94,0:94:3366:0:0:0,-28.2968,-302.834	0/1:147:83,64:83:2980:64:2277:-160.661,0,-224.18	0/1:4:1,3:1:36:3:108:-8.86863,0,-2.39415	0/1:77:51,26:51:1828:26:932:-61.0177,0,-141.622	0/0:82:81,1:81:2876:1:36:0,-21.0862,-255.475	0/1:58:33,25:33:1188:25:886:-62.5735,0,-89.7689	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:69:43,26:43:1548:26:932:-63.4227,0,-118.842	0/0:72:71,1:71:2548:1:36:0,-18.0759,-225.972	0/1:60:33,27:33:1175:27:963:-68.9195,0,-87.9952	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/1:21:9,12:9:320:12:424:-32.1724,0,-22.8207	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/0:75:75,0:75:2670:0:0:0,-22.5772,-240.542	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.269	0/1:66:34,32:34:1224:32:1152:-84.1176,0,-90.5991	0/0:90:89,1:89:3170:1:36:0,-23.4944,-281.925	0/1:46:24,22:24:860:22:790:-57.5646,0,-63.8745	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:35:23,12:23:824:12:432:-28.6805,0,-63.9473	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/1:90:37,53:37:1324:53:1892:-143.462,0,-92.3685	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.999	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/1:147:87,60:87:3128:60:2152:-149.693,0,-237.491	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1851	0/1:75:39,36:39:1396:36:1288:-93.6267,0,-103.361	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/1:178:93,85:93:3336:85:3048:-220.958,0,-246.874	0/1:72:22,50:22:784:50:1792:-139.886,0,-49.2098	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.524
chr11	20405324	.	A	T	35161.2	PASS	AB=0.479947;ABP=18.6867;AC=40;AF=0.212766;AN=188;AO=2169;CIGAR=1X;DP=10547;DPB=10547;DPRA=1.25095;EPP=4712.93;EPPR=18115.3;GTI=2;LEN=1;MEANALT=1.06122;MQM=59.9493;MQMR=59.9909;NS=94;NUMALT=1;ODDS=0.689546;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76777;QR=299193;RO=8369;RPL=0;RPP=4712.93;RPPR=18106.6;RPR=2169;RUN=1;SAF=0;SAP=4712.93;SAR=2169;SRF=1;SRP=18167.4;SRR=8368;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.834	0/1:135:70,64:70:2477:64:2211:-158.554,0,-182.485	0/0:262:262,0:262:9378:0:0:0,-78.8699,-843.973	0/1:295:158,137:158:5651:137:4851:-347.881,0,-419.906	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/0:126:126,0:126:4487:0:0:0,-37.9298,-403.998	0/0:154:154,0:154:5509:0:0:0,-46.3586,-495.933	0/1:112:58,54:58:2072:54:1898:-137.381,0,-153.035	0/0:99:99,0:99:3515:0:0:0,-29.802,-316.559	0/0:45:45,0:45:1611:0:0:0,-13.5463,-145.279	0/1:51:23,28:23:828:28:992:-74.2419,0,-59.4916	0/1:87:45,42:45:1616:42:1487:-107.934,0,-119.54	0/0:44:44,0:44:1559:0:0:0,-13.2453,-140.601	0/1:71:39,32:39:1389:32:1139:-81.4453,0,-103.934	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/1:54:28,26:28:1000:26:928:-67.5826,0,-74.0598	0/1:45:20,25:20:716:25:888:-66.6927,0,-51.2214	0/1:249:137,112:137:4924:112:3959:-281.549,0,-368.352	0/0:158:156,2:156:5567:2:72:0,-40.726,-494.318	0/1:151:70,81:70:2495:81:2874:-213.44,0,-179.347	0/1:69:30,39:30:1056:39:1377:-103.456,0,-74.5798	0/0:139:139,0:139:4979:0:0:0,-41.8432,-448.257	0/0:123:122,0:122:4380:0:0:0,-36.7257,-394.012	0/1:367:174,192:174:6220:192:6833:-504.42,0,-449.361	0/0:272:272,0:272:9760:0:0:0,-81.8802,-878.344	0/0:35:35,0:35:1238:0:0:0,-10.536,-111.723	0/0:534:532,2:532:19078:2:72:0,-153.913,-1709.73	0/1:112:63,49:63:2231:49:1741:-123.257,0,-167.339	0/0:147:146,0:146:5236:0:0:0,-43.9504,-471.056	0/1:8:5,3:5:180:3:93:-6.26849,0,-14.1438	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:194:96,98:96:3443:98:3439:-251.309,0,-251.682	0/1:166:85,81:85:3039:81:2884:-209.827,0,-223.769	0/0:81:81,0:81:2872:0:0:0,-24.3834,-258.715	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:234:137,97:137:4899:97:3438:-239.191,0,-370.621	0/0:39:38,0:38:1360:0:0:0,-11.4391,-122.341	0/0:165:165,0:165:5895:0:0:0,-49.6699,-530.661	0/0:76:76,0:76:2714:0:0:0,-22.8783,-244.503	0/0:68:67,1:67:2384:1:32:0,-17.2707,-211.616	0/1:104:47,57:47:1667:57:2013:-150.134,0,-119.01	0/1:156:87,69:87:3101:69:2449:-173.703,0,-232.356	0/0:214:214,0:214:7655:0:0:0,-64.4204,-688.986	0/0:87:85,2:85:3033:2:72:0,-19.3529,-266.362	0/1:169:79,90:79:2836:90:3212:-238.429,0,-204.604	0/0:272:272,0:272:9715:0:0:0,-81.8802,-874.291	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:233:233,0:233:8348:0:0:0,-70.14,-751.323	0/0:62:62,0:62:2210:0:0:0,-18.6639,-199.164	0/1:16:5,11:5:176:11:396:-31.1663,0,-11.3685	0/0:138:138,0:138:4915:0:0:0,-41.5421,-442.503	0/1:62:27,35:27:964:35:1239:-93.1498,0,-68.413	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:74:36,37:36:1277:37:1289:-93.9175,0,-92.8962	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:269:132,137:132:4739:137:4865:-357.029,0,-345.686	0/0:214:212,2:212:7574:2:68:0,-57.9627,-675.225	0/1:87:47,40:47:1688:40:1423:-102.178,0,-126.017	0/0:152:152,0:152:5436:0:0:0,-45.7566,-489.37	0/1:184:106,78:106:3804:78:2792:-196.131,0,-287.167	0/0:145:144,1:144:5176:1:36:0,-40.0511,-462.379	0/1:16:7,9:7:248:9:324:-24.6894,0,-17.8477	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:17:15,2:15:536:2:68:-1.3402,0,-43.4573	0/0:132:132,0:132:4724:0:0:0,-39.736,-425.319	0/0:96:94,0:94:3367:0:0:0,-28.2968,-302.904	0/0:119:119,0:119:4251:0:0:0,-35.8226,-382.769	0/1:250:145,105:145:5164:105:3747:-262.173,0,-389.644	0/0:147:146,0:146:5208:0:0:0,-43.9504,-468.501	0/1:127:78,49:78:2800:49:1721:-116.942,0,-214.009	0/1:19:10,9:10:351:9:320:-23.4228,0,-26.2071	0/1:157:80,77:80:2867:77:2733:-198.951,0,-211.005	0/0:159:159,0:159:5676:0:0:0,-47.8638,-510.958	0/0:299:296,3:296:10609:3:108:0,-79.9328,-944.641	0/1:83:46,37:46:1630:37:1281:-90.6027,0,-122.002	0/0:54:53,1:53:1899:1:36:0,-12.6573,-167.589	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/1:114:54,60:54:1944:60:2088:-153.869,0,-140.919	0/0:35:34,1:34:1159:1:28:0,-7.73632,-101.807	0/1:60:29,31:29:1040:31:1101:-81.3366,0,-75.8526	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.476	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:46:28,18:28:987:18:644:-44.4432,0,-75.2957	0/1:52:18,34:18:633:34:1192:-91.9288,0,-41.6415	0/0:116:116,0:116:4134:0:0:0,-34.9195,-372.244	0/0:97:97,0:97:3475:0:0:0,-29.1999,-312.916
chr11	20429334	.	TCAC	ACAT,ACAC	98251.4	PASS	AB=0.462635,0.533045;ABP=31.0837,24.968;AC=143,41;AF=0.777174,0.222826;AN=184;AO=3415,1240;CIGAR=1X2M1X,1X3M;DP=4675;DPB=4675.25;DPRA=51.3626,1.41554;EPP=7401.23,2695.64;EPPR=0;GTI=3;LEN=4,1;MEANALT=1.67033,2.23256;MQM=59.5646,59.9597;MQMR=0;NS=92;NUMALT=2;ODDS=1.10488;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=120155,44026;QR=0;RO=0;RPL=3413,1240;RPP=7401.23,2695.64;RPPR=0;RPR=2,0;RUN=1,1;SAF=3415,1240;SAP=7418.59,2695.64;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/2:44:0,28,16:0:0:28,16:988,576:-127.797,-47.3585,-38.9297,-80.7961,0,-75.9796	1/1:56:0,56,0:0:0:56,0:1963,0:-176.937,-16.8577,0,-176.937,-16.8577,-176.937	1/2:84:0,36,47:0:0:36,47:1284,1676:-241.341,-136.678,-125.841,-104.718,0,-90.5699	1/1:17:0,17,0:0:0:17,0:610,0:-55.227,-5.11751,0,-55.227,-5.11751,-55.227	1/1:15:0,15,0:0:0:15,0:510,0:-46.2184,-4.51545,0,-46.2184,-4.51545,-46.2184	1/1:66:0,66,0:0:0:66,0:2336,0:-210.46,-19.868,0,-210.46,-19.868,-210.46	1/1:52:0,52,0:0:0:52,0:1856,0:-167.295,-15.6536,0,-167.295,-15.6536,-167.295	1/2:32:0,12,20:0:0:12,20:420,720:-93.2752,-59.1082,-55.4958,-34.5206,0,-28.5	1/1:64:0,64,0:0:0:64,0:2248,0:-202.573,-19.2659,0,-202.573,-19.2659,-202.573	1/1:71:0,71,0:0:0:71,0:2508,0:-225.962,-21.3731,0,-225.962,-21.3731,-225.962	1/2:63:0,33,30:0:0:33,30:1168,1065:-182.251,-87.1291,-77.1951,-95.4761,0,-86.4452	1/2:75:0,31,44:0:0:31,44:1085,1557:-215.431,-127.174,-117.842,-88.6082,0,-75.3628	1/1:70:0,70,0:0:0:70,0:2470,0:-222.525,-21.0721,0,-222.525,-21.0721,-222.525	1/2:76:0,42,32:0:0:42,32:1477,1144:-213.501,-93.2769,-80.6336,-120.22,0,-110.587	1/1:64:0,63,0:0:0:63,0:2215,0:-199.12,-18.9649,0,-199.12,-18.9649,-199.12	1/1:63:0,63,0:0:0:63,0:2200,0:-198.264,-18.9649,0,-198.264,-18.9649,-198.264	1/2:77:0,41,36:0:0:41,36:1424,1288:-221.136,-105.387,-93.0443,-116.102,0,-105.265	1/2:67:0,25,40:0:0:25,40:885,1436:-189.246,-117.16,-109.635,-72.1042,0,-60.063	1/2:89:0,37,51:0:0:37,51:1280,1816:-252.156,-148.156,-137.018,-104.135,0,-88.7827	1/1:49:0,49,0:0:0:49,0:1719,0:-154.971,-14.7505,0,-154.971,-14.7505,-154.971	1/2:66:0,9,57:0:0:9,57:315,2017:-190.271,-164.643,-161.933,-25.9787,0,-8.81995	1/2:56:0,22,33:0:0:22,33:784,1169:-159.275,-95.3671,-88.7444,-64.0448,0,-54.1108	1/1:21:0,21,0:0:0:21,0:752,0:-68.006,-6.32163,0,-68.006,-6.32163,-68.006	1/1:14:0,14,0:0:0:14,0:489,0:-44.3408,-4.21442,0,-44.3408,-4.21442,-44.3408	1/2:95:0,45,50:0:0:45,50:1591,1796:-276.399,-146.871,-133.324,-129.884,0,-114.833	1/1:13:0,13,0:0:0:13,0:461,0:-41.8248,-3.91339,0,-41.8248,-3.91339,-41.8248	1/1:31:0,31,0:0:0:31,0:1058,0:-95.5096,-9.33193,0,-95.5096,-9.33193,-95.5096	1/1:46:0,46,0:0:0:46,0:1618,0:-145.905,-13.8474,0,-145.905,-13.8474,-145.905	1/2:64:0,35,29:0:0:35,29:1225,1016:-182.303,-82.9615,-72.4255,-99.6337,0,-90.9038	1/1:59:0,59,0:0:0:59,0:2056,0:-185.302,-17.7608,0,-185.302,-17.7608,-185.302	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	.:.:.:.:.:.:.:.	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:3:0,3,0:0:0:3,0:107,0:-9.98123,-0.90309,0,-9.98123,-0.90309,-9.98123	1/2:170:0,76,92:0:0:76,92:2664,3273:-483.556,-266.792,-243.913,-216.816,0,-189.121	1/2:76:0,49,27:0:0:49,27:1731,972:-220.581,-79.6701,-64.9196,-141.268,0,-133.141	1/1:82:0,82,0:0:0:82,0:2882,0:-259.574,-24.6845,0,-259.574,-24.6845,-259.574	.:.:.:.:.:.:.:.	1/2:71:0,35,36:0:0:35,36:1239,1269:-204.514,-103.674,-93.1376,-101.193,0,-90.3564	1/1:21:0,21,0:0:0:21,0:743,0:-67.1837,-6.32163,0,-67.1837,-6.32163,-67.1837	1/1:37:0,37,0:0:0:37,0:1284,0:-115.745,-11.1381,0,-115.745,-11.1381,-115.745	1/1:63:0,60,0:0:0:60,0:2135,0:-192.005,-18.0618,0,-192.005,-18.0618,-192.005	1/1:66:0,66,0:0:0:66,0:2307,0:-207.884,-19.868,0,-207.884,-19.868,-207.884	1/2:32:0,14,18:0:0:14,18:483,648:-92.4627,-53.2333,-49.0189,-39.5807,0,-34.1622	1/2:58:0,38,20:0:0:38,20:1339,705:-166.756,-57.7484,-46.3092,-109.36,0,-103.339	1/1:61:0,59,0:0:0:59,0:2075,0:-186.653,-17.7608,0,-186.653,-17.7608,-186.653	1/1:48:0,48,0:0:0:48,0:1685,0:-151.932,-14.4494,0,-151.932,-14.4494,-151.932	1/2:40:0,20,20:0:0:20,20:697,716:-115.425,-58.7471,-52.7265,-57.0307,0,-51.0101	1/1:57:0,56,0:0:0:56,0:1946,0:-174.857,-16.8577,0,-174.857,-16.8577,-174.857	1/2:4:0,3,1:0:0:3,1:105,36:-11.8328,-3.29724,-2.39415,-8.89288,0,-8.59185	1/1:66:0,63,2:0:0:63,2:2227,72:-200.316,-18.9649,0,-194.441,-13.089,-193.839	1/1:26:0,26,0:0:0:26,0:912,0:-82.3943,-7.82678,0,-82.3943,-7.82678,-82.3943	1/2:10:0,2,8:0:0:2,8:72,273:-28.3705,-22.4919,-21.8899,-6.23466,0,-3.82642	1/1:41:0,41,0:0:0:41,0:1459,0:-131.503,-12.3422,0,-131.503,-12.3422,-131.503	1/2:41:0,15,26:0:0:15,26:530,898:-116.467,-73.303,-68.7875,-43.5145,0,-35.6877	1/2:6:0,5,1:0:0:5,1:171,24:-16.0549,-2.09042,-0.585274,-14.2208,0,-13.9198	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:34:0,34,0:0:0:34,0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chr11	20429448	.	A	G	77863.7	PASS	AB=0.494718;ABP=3.56081;AC=146;AF=0.784946;AN=186;AO=3668;CIGAR=1X;DP=4826;DPB=4826;DPRA=13.1033;EPP=7941.93;EPPR=2515.4;GTI=2;LEN=1;MEANALT=1.01087;MQM=59.488;MQMR=59.7571;NS=93;NUMALT=1;ODDS=0.103008;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131409;QR=41411;RO=1157;RPL=3665;RPP=7941.93;RPPR=2515.4;RPR=3;RUN=1;SAF=0;SAP=7967.97;SAR=3668;SRF=0;SRP=2515.4;SRR=1157;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:360:-32.743,-3.0103,0	0/1:63:38,25:38:1368:25:896:-61.9657,0,-104.456	1/1:29:0,29:0:0:29:1036:-93.496,-8.72987,0	0/1:79:45,34:45:1616:34:1224:-86.6549,0,-121.945	1/1:24:0,24:0:0:24:860:-77.7187,-7.22472,0	1/1:24:0,24:0:0:24:860:-77.7129,-7.22472,0	1/1:66:0,66:0:0:66:2368:-213.364,-19.868,0	1/1:108:0,108:0:0:108:3868:-346.965,-32.5112,0	0/1:57:45,12:45:1607:12:424:-21.2669,0,-127.758	1/1:76:1,75:1:36:75:2692:-238.828,-19.28,0	1/1:46:0,46:0:0:46:1644:-148.246,-13.8474,0	0/1:47:27,20:27:964:20:711:-50.1672,0,-72.9284	0/1:58:27,31:27:972:31:1116:-83.291,0,-70.3331	1/1:66:0,66:0:0:66:2368:-212.932,-19.868,0	0/1:57:31,26:31:1116:26:936:-67.4008,0,-83.5883	1/1:51:0,51:0:0:51:1819:-163.985,-15.3525,0	1/1:54:0,54:0:0:54:1926:-173.617,-16.2556,0	0/1:65:38,27:38:1343:27:968:-67.8704,0,-101.601	0/1:36:16,20:16:576:20:720:-54.2214,0,-41.3379	0/1:63:27,36:27:964:36:1284:-96.8199,0,-68.1119	1/1:22:0,22:0:0:22:784:-70.8109,-6.62266,0	0/1:35:18,17:18:644:17:608:-44.5136,0,-47.7536	0/1:55:39,16:39:1381:16:576:-35.5732,0,-108.025	1/1:45:0,45:0:0:45:1612:-145.299,-13.5464,0	1/1:26:0,26:0:0:26:932:-84.178,-7.82678,0	0/1:132:56,76:56:2012:76:2728:-206.003,0,-141.588	1/1:37:0,37:0:0:37:1332:-119.788,-11.1381,0	1/1:36:0,36:0:0:36:1290:-116.201,-10.8371,0	1/1:82:0,82:0:0:82:2940:-264.715,-24.6845,0	0/1:65:32,33:32:1148:33:1163:-85.3064,0,-84.0536	1/1:48:0,48:0:0:48:1724:-155.422,-14.4494,0	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	1/1:8:0,8:0:0:8:288:-26.1969,-2.40824,0	1/1:7:0,7:0:0:7:252:-23.028,-2.10721,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83577,-0.60206,0	0/1:133:64,69:64:2291:69:2466:-182.13,0,-166.409	0/1:91:39,52:39:1396:52:1872:-141.08,0,-98.516	1/1:69:0,69:0:0:69:2479:-223.363,-20.7711,0	1/1:1:0,1:0:0:1:36:-3.57343,-0.30103,0	0/1:73:37,36:37:1313:36:1292:-94.5784,0,-96.493	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:69:0,69:0:0:69:2467:-222.249,-20.7711,0	1/1:57:0,57:0:0:57:2032:-183.152,-17.1587,0	1/1:57:0,57:0:0:57:2033:-183.24,-17.1587,0	0/1:60:34,26:34:1208:26:924:-65.4136,0,-90.9619	0/1:62:17,45:17:593:45:1612:-126.704,0,-35.0309	1/1:46:1,45:1:36:45:1608:-141.407,-10.2491,0	1/1:38:0,38:0:0:38:1364:-123,-11.4391,0	0/1:50:18,32:18:644:32:1152:-88.934,0,-43.2358	1/1:78:0,78:0:0:78:2785:-250.455,-23.4803,0	.:.:.:.:.:.:.:.	1/1:60:0,60:0:0:60:2150:-193.747,-18.0618,0	1/1:42:0,42:0:0:42:1491:-134.482,-12.6433,0	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	1/1:54:1,53:1:36:53:1904:-167.964,-12.6573,0	0/1:64:29,35:29:1040:35:1252:-93.7,0,-74.6484	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:33:0,33:0:0:33:1182:-106.643,-9.93399,0	0/1:89:48,40:48:1724:40:1436:-102.667,0,-128.506	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:76:36,40:36:1292:40:1424:-105.575,0,-93.7046	1/1:115:0,115:0:0:115:4132:-371.965,-34.6185,0	0/1:50:22,28:22:792:28:1008:-75.9042,0,-56.5526	1/1:17:0,17:0:0:17:608:-54.6773,-5.11751,0	0/1:97:42,55:42:1508:55:1976:-148.753,0,-106.726	1/1:55:0,55:0:0:55:1957:-175.744,-16.5567,0	0/1:22:8,14:8:288:14:504:-39.0505,0,-19.6432	1/1:44:0,44:0:0:44:1580:-142.491,-13.2453,0	1/1:69:0,69:0:0:69:2467:-222.278,-20.7711,0	0/1:14:12,2:12:432:2:72:-2.62188,0,-35.0068	1/1:75:0,75:0:0:75:2688:-242.16,-22.5773,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:82:0,82:0:0:82:2944:-264.955,-24.6845,0	0/1:62:26,36:26:928:36:1284:-97.1759,0,-65.1678	1/1:49:0,49:0:0:49:1747:-157.512,-14.7505,0	0/1:47:19,28:19:680:28:999:-76.0761,0,-47.3779	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:45:22,23:22:784:23:824:-60.9335,0,-57.336	1/1:36:0,36:0:0:36:1296:-116.673,-10.8371,0	1/1:98:0,98:0:0:98:3510:-315.723,-29.5009,0	0/1:97:49,48:49:1764:48:1720:-125.883,0,-129.84	1/1:49:0,49:0:0:49:1760:-158.68,-14.7505,0	1/1:61:1,60:1:36:60:2156:-190.463,-14.7646,0	0/1:97:58,39:58:2080:39:1400:-97.0916,0,-158.194	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:75:49,26:49:1756:26:932:-61.6203,0,-135.745	1/1:60:1,59:1:36:59:2103:-185.939,-14.4635,0	1/1:36:1,35:1:36:35:1256:-109.676,-7.23881,0	0/1:57:23,34:23:828:34:1224:-93.2813,0,-57.6358	0/1:60:39,21:39:1387:21:756:-50.3054,0,-107.064	1/1:39:0,39:0:0:39:1396:-125.735,-11.7402,0	1/1:89:0,89:0:0:89:3204:-288.205,-26.7917,0
chr11	20530641	.	T	C	30342.4	PASS	AB=0.563015;ABP=86.7533;AC=42;AF=0.223404;AN=188;AO=1396;CIGAR=1X;DP=5075;DPB=5075;DPRA=1.3665;EPP=859.41;EPPR=8.22703;GTI=5;LEN=1;MEANALT=1.02083;MQM=58.9792;MQMR=59.6835;NS=94;NUMALT=1;ODDS=0.216283;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49350;QR=131556;RO=3678;RPL=307;RPP=954.233;RPPR=5757.52;RPR=1089;RUN=1;SAF=1376;SAP=2863.16;SAR=20;SRF=2068;SRP=126.854;SRR=1610;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.716	0/1:35:15,20:15:521:20:711:-53.7078,0,-36.5126	0/0:63:63,0:63:2249:0:0:0,-18.9649,-202.58	0/1:70:30,40:30:1072:40:1401:-105.067,0,-75.7138	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.5971	0/0:18:17,1:17:608:1:32:0,-2.23205,-51.8655	0/0:44:44,0:44:1550:0:0:0,-13.2453,-139.788	0/1:79:18,61:18:648:61:2165:-171.289,0,-34.8705	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.9778	0/0:69:69,0:69:2460:0:0:0,-20.7711,-221.652	0/1:111:63,48:63:2260:48:1687:-118.663,0,-170.195	0/1:96:59,37:59:2103:37:1312:-89.4466,0,-160.64	0/0:153:153,0:153:5488:0:0:0,-46.0576,-494.045	0/1:98:43,55:43:1548:55:1931:-144.133,0,-110.112	0/0:90:90,0:90:3223:0:0:0,-27.0927,-290.089	0/0:138:138,0:138:4915:0:0:0,-41.5421,-442.196	0/1:66:49,17:49:1760:17:593:-33.8255,0,-138.815	0/1:47:34,13:34:1203:13:456:-27.2248,0,-94.1909	0/1:51:17,34:17:597:34:1209:-93.7289,0,-38.7036	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.399	1/1:12:0,12:0:0:12:413:-37.4976,-3.61236,0	0/1:176:46,130:46:1618:130:4587:-359.617,0,-92.9262	0/0:35:34,1:34:1212:1:36:0,-6.93777,-105.788	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/1:123:33,90:33:1176:90:3213:-252.33,0,-69.1211	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.422	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.595	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.487	0/1:47:8,39:8:288:39:1388:-110.981,0,-12.119	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:6:2,4:2:72:4:144:-11.4614,0,-5.03054	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:179:97,82:97:3468:82:2903:-207.564,0,-258.413	0/1:20:7,13:7:248:13:454:-35.1542,0,-16.6436	0/0:61:61,0:61:2183:0:0:0,-18.3628,-196.734	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:28:18,10:18:639:10:360:-24.3155,0,-49.4094	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:110:110,0:110:3933:0:0:0,-33.1133,-353.529	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.665	0/1:68:15,53:15:540:53:1887:-149.633,0,-28.4665	0/1:31:16,15:16:572:15:532:-38.8812,0,-42.4815	0/0:35:34,1:34:1224:1:32:0,-7.33691,-107.153	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:47:14,33:14:504:33:1172:-91.5389,0,-31.5497	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4454	1/1:3:0,3:0:0:3:108:-10.0369,-0.90309,0	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:37:36,1:36:1292:1:36:0,-7.53983,-112.985	0/1:19:7,12:7:252:12:419:-32.3137,0,-17.309	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:109:59,50:59:2093:50:1728:-122.929,0,-155.825	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:65:13,52:13:460:52:1847:-146.897,0,-22.1684	0/0:37:35,2:35:1248:2:72:0,-4.30181,-105.758	0/1:36:12,24:12:428:24:851:-65.9824,0,-28.0217	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:59:23,36:23:819:36:1271:-96.9117,0,-56.2243	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.072	0/1:56:31,25:31:1097:25:874:-61.9825,0,-82.1242	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:107:107,0:107:3831:0:0:0,-32.2102,-344.698	0/1:10:2,8:2:72:8:280:-22.4702,0,-3.82642	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7595	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.877	0/0:98:97,1:97:3468:1:36:0,-25.9027,-308.153	0/1:55:23,32:23:813:32:1132:-85.5648,0,-56.9301	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.646	0/1:59:18,41:18:648:41:1468:-114.584,0,-40.8911	0/1:7:4,3:4:144:3:108:-7.93095,0,-11.2064	0/1:67:23,43:23:828:43:1529:-117.426,0,-54.5713	0/0:30:30,0:30:1065:0:0:0,-9.0309,-95.7888	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.851	0/1:96:60,36:60:2156:36:1279:-86.3878,0,-165.379	0/0:85:84,1:84:3015:1:27:0,-22.8878,-268.876	0/0:117:116,1:116:4164:1:36:0,-31.6227,-371.314	0/1:151:84,67:84:3008:67:2354:-166.632,0,-225.344	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:80:32,48:32:1148:48:1704:-129.514,0,-79.5116	0/0:74:73,1:73:2607:1:36:0,-18.6779,-231.157	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.856	0/1:100:55,45:55:1964:45:1590:-113.281,0,-146.886	0/1:78:28,50:28:1004:50:1767:-135.771,0,-67.1955	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.6621	0/0:148:148,0:148:5312:0:0:0,-44.5524,-477.391
chr11	20542784	.	GT	TT,TC	23838.7	PASS	AB=0.49851,0.5;ABP=3.03619,3.0103;AC=142,42;AF=0.771739,0.228261;AN=184;AO=2247,699;CIGAR=1X1M,2X;DP=2951;DPB=2951;DPRA=13.0933,1.23969;EPP=4873.63,1520.87;EPPR=5.18177;GTI=5;LEN=1,2;MEANALT=1.47778,2;MQM=24.3049,22.7382;MQMR=10;NS=92;NUMALT=2;ODDS=0.39984;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=52586,24356;QR=25;RO=1;RPL=2246,699;RPP=4873.63,1520.87;RPPR=5.18177;RPR=1,0;RUN=1,1;SAF=2247,699;SAP=4882.31,1520.87;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14,0:0:0:14,0:335,0:-26.8506,-4.21442,0,-26.8506,-4.21442,-26.8506	1/2:12:0,6,6:0:0:6,6:147,212:-21.4129,-11.349,-9.54284,-10.2935,0,-8.48728	1/1:37:0,37,0:0:0:37,0:887,0:-70.8601,-11.1381,0,-70.8601,-11.1381,-70.8601	1/2:83:0,41,42:0:0:41,42:946,1487:-129.358,-67.2827,-54.9405,-62.2819,0,-49.6386	1/1:15:0,15,0:0:0:15,0:356,0:-28.4691,-4.51545,0,-28.4691,-4.51545,-28.4691	1/1:13:0,13,0:0:0:13,0:311,0:-24.9609,-3.91339,0,-24.9609,-3.91339,-24.9609	1/1:19:0,19,0:0:0:19,0:435,0:-34.2206,-5.71957,0,-34.2206,-5.71957,-34.2206	1/1:56:0,56,0:0:0:56,0:1313,0:-103.875,-16.8577,0,-103.875,-16.8577,-103.875	1/2:19:0,9,10:0:0:9,10:220,356:-33.0479,-18.1252,-15.4159,-15.1474,0,-12.1371	1/1:19:0,19,0:0:0:19,0:436,0:-34.3109,-5.71957,0,-34.3109,-5.71957,-34.3109	1/1:9:0,9,0:0:0:9,0:205,0:-16.2188,-2.70927,0,-16.2188,-2.70927,-16.2188	1/2:24:0,12,12:0:0:12,12:290,422:-39.6317,-20.1216,-16.5092,-19.726,0,-16.1136	1/2:28:0,20,8:0:0:20,8:457,273:-42.9124,-13.1317,-7.11111,-29.9896,0,-27.5814	1/1:22:0,22,0:0:0:22,0:506,0:-39.8012,-6.62266,0,-39.8012,-6.62266,-39.8012	1/2:11:0,6,5:0:0:6,5:139,175:-17.1481,-8.06769,-6.26151,-9.28561,0,-7.78046	1/1:12:0,12,0:0:0:12,0:287,0:-23.3308,-3.61236,0,-23.3308,-3.61236,-23.3308	1/1:16:0,15,0:0:0:15,0:358,0:-28.4492,-4.51545,0,-28.4492,-4.51545,-28.4492	1/2:11:0,7,4:0:0:7,4:161,129:-17.1887,-6.7043,-4.59709,-10.6932,0,-9.48905	1/2:5:0,4,1:0:0:4,1:92,36:-7.86357,-1.88212,-0.678001,-6.1961,0,-5.89507	1/2:58:0,20,38:0:0:20,38:454,1326:-89.6625,-60.2244,-54.2038,-29.6392,0,-18.2001	1/1:82:0,82,0:0:0:82,0:1961,0:-156.175,-24.6845,0,-156.175,-24.6845,-156.175	2/2:22:0,1,21:0:0:1,21:23,726:-39.09,-37.5913,-37.2902,-6.32163,-4.6226,0	1/2:13:0,6,7:0:0:6,7:138,252:-20.2371,-11.2469,-9.44075,-9.19415,0,-7.08694	1/1:44:0,44,0:0:0:44,0:1022,0:-80.5745,-13.2453,0,-80.5745,-13.2453,-80.5745	1/1:34:0,34,0:0:0:34,0:783,0:-61.4919,-10.235,0,-61.4919,-10.235,-61.4919	1/2:95:0,44,50:0:0:44,50:1077,1693:-153.311,-80.1591,-66.9137,-73.1776,0,-58.1261	1/1:47:0,47,0:0:0:47,0:1112,0:-87.9768,-14.1484,0,-87.9768,-14.1484,-87.9768	1/1:5:0,5,0:0:0:5,0:113,0:-9.01686,-1.50515,0,-9.01686,-1.50515,-9.01686	1/1:119:0,119,0:0:0:119,0:2797,0:-221.235,-35.8226,0,-221.235,-35.8226,-221.235	1/2:67:0,32,35:0:0:32,35:744,1214:-106.823,-57.8706,-48.2376,-49.1619,0,-38.6259	1/1:23:0,23,0:0:0:23,0:527,0:-41.4209,-6.92369,0,-41.4209,-6.92369,-41.4209	1/2:7:0,2,5:0:0:2,5:46,160:-10.9291,-7.93251,-7.33045,-3.19805,0,-1.6929	1/1:5:0,5,0:0:0:5,0:115,0:-9.20027,-1.50515,0,-9.20027,-1.50515,-9.20027	1/1:4:0,4,0:0:0:4,0:105,0:-8.87857,-1.20412,0,-8.87857,-1.20412,-8.87857	1/1:8:0,8,0:0:0:8,0:184,0:-14.6004,-2.40824,0,-14.6004,-2.40824,-14.6004	1/1:3:0,3,0:0:0:3,0:69,0:-5.60017,-0.90309,0,-5.60017,-0.90309,-5.60017	1/2:52:0,29,23:0:0:29,23:663,811:-83.5188,-40.4221,-31.6923,-43.3115,0,-36.3878	1/2:52:0,31,21:0:0:31,21:739,730:-83.7402,-34.3984,-25.0665,-49.5545,0,-43.2329	1/1:9:0,9,0:0:0:9,0:206,0:-16.3096,-2.70927,0,-16.3096,-2.70927,-16.3096	.:.:.:.:.:.:.:.	1/2:61:0,25,36:0:0:25,36:588,1266:-98.7511,-59.8416,-52.3159,-39.1204,0,-28.2833	1/1:8:0,8,0:0:0:8,0:184,0:-14.6004,-2.40824,0,-14.6004,-2.40824,-14.6004	1/1:58:0,58,0:0:0:58,0:1359,0:-107.396,-17.4597,0,-107.396,-17.4597,-107.396	1/1:10:0,10,0:0:0:10,0:230,0:-18.2005,-3.0103,0,-18.2005,-3.0103,-18.2005	1/1:17:0,17,0:0:0:17,0:389,0:-30.7002,-5.11751,0,-30.7002,-5.11751,-30.7002	1/2:60:0,32,28:0:0:32,28:756,978:-95.9008,-45.5167,-35.8837,-50.595,0,-42.1662	1/2:36:0,21,15:0:0:21,15:483,529:-56.5873,-25.1183,-18.7966,-31.6795,0,-27.1641	1/1:71:0,71,0:0:0:71,0:1641,0:-129.266,-21.3731,0,-129.266,-21.3731,-129.266	1/1:28:0,28,0:0:0:28,0:644,0:-50.6015,-8.42884,0,-50.6015,-8.42884,-50.6015	1/2:55:0,31,24:0:0:31,24:711,828:-84.116,-37.8304,-28.4984,-46.4897,0,-39.265	1/1:34:0,34,0:0:0:34,0:791,0:-62.4849,-10.235,0,-62.4849,-10.235,-62.4849	1/2:4:0,1,3:0:0:1,3:36,108:-7.91415,-4.93935,-4.63832,-3.2968,0,-2.39371	1/1:31:0,31,0:0:0:31,0:752,0:-60.3323,-9.33193,0,-60.3323,-9.33193,-60.3323	1/1:10:0,10,0:0:0:10,0:243,0:-19.6549,-3.0103,0,-19.6549,-3.0103,-19.6549	1/2:8:0,4,4:0:0:4,4:92,133:-12.7157,-6.72677,-5.52265,-6.1961,0,-4.99198	1/1:50:0,50,0:0:0:50,0:1152,0:-90.6439,-15.0515,0,-90.6439,-15.0515,-90.6439	2/2:1:0,0,1:0:0:0,1:0,36:-2.08658,-2.08658,-2.08658,-0.30103,-0.30103,0	1/2:6:0,2,4:0:0:2,4:46,133:-9.39119,-6.39494,-5.79288,-3.19805,0,-1.99393	1/1:7:0,7,0:0:0:7,0:157,0:-12.4358,-2.10721,0,-12.4358,-2.10721,-12.4358	1/1:20:0,20,0:0:0:20,0:474,0:-37.7378,-6.0206,0,-37.737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chr11	20562089	.	T	G	109758	PASS	AB=0.511607;ABP=6.84122;AC=147;AF=0.790323;AN=186;AO=6140;CIGAR=1X;DP=7748;DPB=7748;DPRA=84.2065;EPP=13335.9;EPPR=3490.39;GTI=1;LEN=1;MEANALT=1.02174;MQM=34.6059;MQMR=36.8742;NS=93;NUMALT=1;ODDS=2.82018;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=216858;QR=57290;RO=1606;RPL=6140;RPP=13335.9;RPPR=3490.39;RPR=0;RUN=1;SAF=6140;SAP=13335.9;SAR=0;SRF=1606;SRP=3490.39;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1527:-123.62,-12.9443,0	0/1:101:41,60:41:1464:60:2097:-140.194,0,-93.3278	1/1:143:0,143:0:0:143:5025:-409.951,-43.0473,0	0/1:222:104,118:104:3716:118:4195:-274.553,0,-243.702	1/1:63:0,63:0:0:63:2214:-179.942,-18.9649,0	1/1:47:0,47:0:0:47:1680:-136.751,-14.1484,0	1/1:154:0,154:0:0:154:5445:-436.98,-46.3586,0	1/1:134:0,134:0:0:134:4756:-383.754,-40.338,0	0/1:75:39,36:39:1396:36:1276:-81.6094,0,-94.985	1/1:79:0,79:0:0:79:2818:-228.051,-23.7814,0	1/1:20:0,20:0:0:20:712:-58.2419,-6.0206,0	0/1:41:26,14:26:932:14:491:-28.1536,0,-66.9848	0/1:33:17,16:17:584:16:563:-35.219,0,-39.7519	1/1:34:0,34:0:0:34:1203:-98.1407,-10.235,0	0/1:19:9,10:9:311:10:348:-22.7367,0,-20.7062	1/1:29:0,29:0:0:29:1008:-82.6232,-8.72987,0	1/1:20:0,20:0:0:20:708:-56.7308,-6.0206,0	0/1:17:11,6:11:387:6:207:-12.1236,0,-28.1033	0/1:6:2,4:2:72:4:144:-10.2046,0,-4.63026	0/1:185:93,92:93:3318:92:3296:-211.774,0,-221.763	1/1:87:0,87:0:0:87:3033:-248.57,-26.1896,0	0/1:130:90,40:90:3228:40:1420:-74.762,0,-230.459	0/1:78:42,36:42:1495:36:1271:-79.2235,0,-99.7223	1/1:97:0,97:0:0:97:3447:-279.624,-29.1999,0	1/1:135:0,135:0:0:135:4751:-386.152,-40.6391,0	0/1:257:129,128:129:4600:128:4527:-284.685,0,-304.461	1/1:144:0,144:0:0:144:5056:-411.076,-43.3483,0	1/1:12:0,12:0:0:12:432:-35.3831,-3.61236,0	1/1:300:0,300:0:0:300:10628:-849.431,-90.309,0	0/1:172:86,86:86:3062:86:3039:-193.231,0,-204.681	1/1:145:0,145:0:0:145:5148:-417.927,-43.6494,0	0/1:2:1,1:1:36:1:36:-2.6441,0,-2.74409	1/1:28:0,28:0:0:28:1000:-81.7461,-8.42884,0	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	1/1:7:0,7:0:0:7:248:-20.572,-2.10721,0	0/1:78:34,44:34:1216:44:1554:-100.994,0,-77.515	0/1:195:88,107:88:3148:107:3799:-249.62,0,-200.864	1/1:14:0,14:0:0:14:496:-40.7114,-4.21442,0	1/1:5:0,5:0:0:5:163:-13.4941,-1.50515,0	0/1:236:97,139:97:3468:139:4921:-327.842,0,-219.764	1/1:18:0,18:0:0:18:631:-51.9571,-5.41854,0	1/1:155:1,154:1:36:154:5389:-437.264,-43.3135,0	1/1:20:0,20:0:0:20:690:-55.6243,-6.0206,0	1/1:30:0,30:0:0:30:1037:-85.514,-9.0309,0	0/1:102:61,41:61:2172:41:1444:-83.5026,0,-151.917	0/1:112:38,74:38:1359:74:2613:-179.985,0,-81.8288	1/1:215:0,215:0:0:215:7599:-613.176,-64.7215,0	1/1:126:0,126:0:0:126:4456:-362.075,-37.9298,0	0/1:93:38,55:38:1364:55:1964:-131.99,0,-86.522	1/1:215:0,215:0:0:215:7609:-607.216,-64.7215,0	1/1:4:0,4:0:0:4:140:-11.805,-1.20412,0	1/1:229:1,228:1:36:228:8123:-652.235,-65.5483,0	1/1:26:0,26:0:0:26:916:-73.9707,-7.82678,0	0/1:17:9,8:9:315:8:288:-17.5213,0,-22.0041	1/1:111:0,111:0:0:111:3929:-318.664,-33.4143,0	0/1:38:23,14:23:828:14:500:-29.5618,0,-56.5241	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.34615	1/1:25:0,25:0:0:25:892:-70.1535,-7.52575,0	1/1:36:0,36:0:0:36:1283:-103.632,-10.8371,0	0/1:69:31,38:31:1103:38:1320:-87.162,0,-71.7627	0/1:7:4,3:4:144:3:108:-6.98204,0,-10.2735	0/1:182:97,85:97:3463:85:3019:-186.334,0,-233.324	1/1:161:2,159:2:72:159:5640:-450.046,-42.1082,0	0/1:49:18,31:18:640:31:1095:-74.6562,0,-39.258	1/1:94:1,93:1:36:93:3298:-265.875,-25.0507,0	0/1:189:73,116:73:2608:116:4046:-274.678,0,-161.543	1/1:135:3,132:3:108:132:4643:-366.93,-31.2698,0	1/1:2:0,2:0:0:2:72:-6.1677,-0.60206,0	1/1:123:0,123:0:0:123:4333:-353.977,-37.0267,0	1/1:34:0,34:0:0:34:1199:-96.0331,-10.235,0	0/1:18:12,6:12:413:6:207:-11.8762,0,-29.6917	1/1:130:0,130:0:0:130:4588:-373.441,-39.1339,0	1/1:53:0,53:0:0:53:1853:-151.276,-15.9546,0	1/1:123:0,123:0:0:123:4324:-352.755,-37.0267,0	0/1:177:104,73:104:3697:73:2603:-157.834,0,-255.908	1/1:92:0,92:0:0:92:3223:-263.814,-27.6948,0	0/1:62:32,30:32:1136:30:1076:-68.9954,0,-78.2087	0/1:6:2,4:2:72:4:140:-9.99879,0,-4.63026	0/1:118:57,61:57:2035:61:2167:-141.051,0,-135.233	1/1:76:0,76:0:0:76:2674:-218.828,-22.8783,0	1/1:238:0,238:0:0:238:8359:-680.097,-71.6451,0	0/1:58:24,34:24:864:34:1193:-79.4702,0,-55.1752	1/1:19:0,19:0:0:19:663:-54.6775,-5.71957,0	1/1:35:0,35:0:0:35:1243:-101.335,-10.5361,0	0/1:49:23,26:23:816:26:894:-59.0841,0,-54.1293	1/1:21:0,21:0:0:21:739:-60.7779,-6.32163,0	0/1:38:19,19:19:680:19:668:-43.4782,0,-45.0965	1/1:30:0,30:0:0:30:1072:-88.0978,-9.0309,0	1/1:10:0,10:0:0:10:356:-29.4286,-3.0103,0	0/1:21:11,10:11:392:10:360:-23.1069,0,-26.8129	0/1:22:12,10:12:432:10:360:-22.2083,0,-29.888	1/1:103:0,103:0:0:103:3619:-293.823,-31.0061,0	1/1:43:0,43:0:0:43:1483:-121.901,-12.9443,0
chr11	20628560	.	CCCG	TCCA,TCCG	120839	PASS	AB=0.543286,0.45053;ABP=39.8563,51.1357;AC=147,41;AF=0.781915,0.218085;AN=188;AO=4658,1035;CIGAR=1X2M1X,1X3M;DP=5720;DPB=5720;DPRA=13.7947,0.912171;EPP=10048.4,2241.81;EPPR=9.52472;GTI=4;LEN=4,1;MEANALT=1.70652,2.25;MQM=59.6134,60;MQMR=60;NS=94;NUMALT=2;ODDS=1.0851;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=162095,37113;QR=108;RO=3;RPL=7,1;RPP=10057,2241.81;RPPR=9.52472;RPR=4651,1034;RUN=1,1;SAF=4657,1035;SAP=10109,2250.48;SAR=1,0;SRF=3;SRP=9.52472;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:0,64,0:0:0:64,0:2203,0:-198.512,-19.2659,0,-198.512,-19.2659,-198.512	1/2:45:0,28,17:0:0:28,17:973,604:-128.663,-49.5731,-41.1443,-79.4421,0,-74.3245	1/1:74:0,72,1:0:0:72,1:2477,36:-222.853,-21.6742,0,-219.916,-18.6768,-219.615	1/2:49:0,17,32:0:0:17,32:542,1148:-137.628,-93.9969,-88.8794,-43.964,0,-34.3311	1/1:36:0,36,0:0:0:36,0:1285,0:-115.954,-10.8371,0,-115.954,-10.8371,-115.954	1/1:23:0,23,0:0:0:23,0:816,0:-73.7573,-6.92369,0,-73.7573,-6.92369,-73.7573	1/1:84:0,82,0:0:0:82,0:2852,0:-256.651,-24.6845,0,-256.651,-24.6845,-256.651	1/1:62:0,62,0:0:0:62,0:2141,0:-192.878,-18.6639,0,-192.878,-18.6639,-192.878	1/2:67:0,37,30:0:0:37,30:1281,1075:-192.126,-88.0317,-76.8936,-104.447,0,-95.4162	1/1:55:0,55,0:0:0:55,0:1917,0:-172.803,-16.5567,0,-172.803,-16.5567,-172.803	1/1:68:0,68,0:0:0:68,0:2381,0:-214.543,-20.47,0,-214.543,-20.47,-214.543	1/2:109:0,56,52:0:0:56,52:1950,1868:-310.819,-152.464,-135.607,-158.426,0,-142.772	1/2:114:0,57,55:0:0:57,55:2001,1976:-324.039,-161.201,-144.042,-162.836,0,-146.28	1/1:42:0,42,0:0:0:42,0:1459,0:-131.591,-12.6433,0,-131.591,-12.6433,-131.591	1/2:87:0,60,27:0:0:60,27:2068,968:-247.279,-79.3096,-61.2478,-168.324,0,-160.196	1/1:96:0,96,0:0:0:96,0:3336,0:-300.439,-28.8989,0,-300.439,-28.8989,-300.439	1/1:45:0,45,0:0:0:45,0:1563,0:-140.759,-13.5464,0,-140.759,-13.5464,-140.759	1/2:26:0,18,8:0:0:18,8:624,284:-74.1999,-23.4951,-18.0766,-51.057,0,-48.6488	1/2:38:0,22,16:0:0:22,16:777,576:-110.631,-47.3585,-40.7358,-63.6294,0,-58.8129	1/2:69:0,42,27:0:0:42,27:1433,972:-195.934,-79.6701,-67.0268,-116.616,0,-108.488	1/1:125:0,125,0:0:0:125,0:4332,0:-390.015,-37.6288,0,-390.015,-37.6288,-390.015	1/2:22:0,17,5:0:0:17,5:587,176:-62.3645,-14.6799,-9.56236,-48.035,0,-46.5298	1/2:72:0,42,29:0:0:42,29:1448,1040:-202.547,-84.9317,-72.2884,-117.715,0,-108.985	1/1:52:0,52,0:0:0:52,0:1805,0:-162.714,-15.6536,0,-162.714,-15.6536,-162.714	1/1:70:0,70,0:0:0:70,0:2422,0:-218.222,-21.0721,0,-218.222,-21.0721,-218.222	1/2:112:0,67,45:0:0:67,45:2310,1619:-320.091,-132.454,-112.285,-187.991,0,-174.445	1/1:182:0,182,0:0:0:182,0:6309,0:-567.857,-54.7875,0,-567.857,-54.7875,-567.857	1/1:68:0,68,0:0:0:68,0:2382,0:-214.632,-20.47,0,-214.632,-20.47,-214.632	1/1:109:0,109,0:0:0:109,0:3781,0:-340.483,-32.8123,0,-340.483,-32.8123,-340.483	1/2:34:0,17,17:0:0:17,17:595,608:-98.3354,-49.9345,-44.817,-48.7545,0,-43.637	1/1:30:0,29,0:0:0:29,0:1000,0:-89.4261,-8.72987,0,-89.4261,-8.72987,-89.4261	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:9:0,9,0:0:0:9,0:313,0:-28.506,-2.70927,0,-28.506,-2.70927,-28.506	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:8:0,8,0:0:0:8,0:278,0:-25.3571,-2.40824,0,-25.3571,-2.40824,-25.3571	1/2:226:1,110,114:1:36:110,114:3836,4104:-643.634,-331.967,-301.792,-309.064,0,-277.684	1/2:27:0,13,14:0:0:13,14:459,500:-78.4989,-41.1218,-37.2084,-37.732,0,-33.5176	1/1:81:0,81,0:0:0:81,0:2803,0:-251.625,-24.3834,0,-251.625,-24.3834,-251.625	1/1:2:0,2,0:0:0:2,0:65,0:-6.17303,-0.60206,0,-6.17303,-0.60206,-6.17303	1/2:38:0,8,30:0:0:8,30:263,1080:-109.729,-88.4823,-86.0741,-21.5819,0,-12.551	1/1:38:0,38,0:0:0:38,0:1338,0:-120.71,-11.4391,0,-120.71,-11.4391,-120.71	1/1:79:0,78,0:0:0:78,0:2678,0:-240.97,-23.4803,0,-240.97,-23.4803,-240.97	1/1:127:0,126,0:0:0:126,0:4449,0:-400.26,-37.9298,0,-400.26,-37.9298,-400.26	1/1:91:0,91,0:0:0:91,0:3054,0:-274.955,-27.3937,0,-274.955,-27.3937,-274.955	1/2:20:0,9,11:0:0:9,11:315,387:-57.4826,-31.8546,-29.1453,-25.9787,0,-22.6673	1/2:43:0,14,29:0:0:14,29:464,1023:-121.176,-83.6519,-79.4374,-37.8619,0,-29.1321	1/1:68:0,68,0:0:0:68,0:2366,0:-213.17,-20.47,0,-213.17,-20.47,-213.17	1/1:65:0,65,0:0:0:65,0:2274,0:-204.922,-19.567,0,-204.922,-19.567,-204.922	1/2:58:0,36,22:0:0:36,22:1272,792:-168.548,-64.983,-54.1459,-103.923,0,-97.3	1/1:29:0,28,1:0:0:28,1:978,36:-87.9714,-8.42884,0,-85.0337,-5.1316,-84.7326	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:72:0,71,0:0:0:71,0:2468,0:-222.111,-21.3731,0,-222.111,-21.3731,-222.111	1/1:24:0,24,0:0:0:24,0:845,0:-76.3681,-7.22472,0,-76.3681,-7.22472,-76.3681	1/2:6:0,5,1:0:0:5,1:174,36:-17.4355,-3.29724,-1.79209,-14.4961,0,-14.1951	1/1:62:0,61,1:0:0:61,1:2104,36:-189.265,-18.3628,0,-186.327,-15.0656,-186.026	1/2:31:0,11,20:0:0:11,20:384,707:-89.1667,-57.934,-54.6226,-31.5832,0,-25.5626	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.046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chr11	20628596	.	C	T	214758	PASS	AB=0.519599;ABP=17.3098;AC=148;AF=0.787234;AN=188;AO=7897;CIGAR=1X;DP=9970;DPB=9970;DPRA=0;EPP=17116.4;EPPR=4500.13;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.5698;MQMR=59.9783;NS=94;NUMALT=1;ODDS=0.445039;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281025;QR=73220;RO=2071;RPL=4506;RPP=344.865;RPPR=3.47269;RPR=3391;RUN=1;SAF=4502;SAP=339.977;SAR=3395;SRF=1025;SRP=3.47269;SRR=1046;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:76:1,75:1:36:75:2676:-237.418,-19.28,0	0/1:78:29,48:29:1009:48:1712:-130.792,0,-67.58	1/1:104:0,104:0:0:104:3703:-333.388,-31.3071,0	0/1:75:49,26:49:1764:26:928:-61.2563,0,-136.467	1/1:51:0,51:0:0:51:1810:-163.166,-15.3525,0	1/1:35:0,35:0:0:35:1252:-112.977,-10.5361,0	1/1:120:1,119:1:36:119:4250:-378.988,-32.5253,0	1/1:94:0,94:0:0:94:3355:-302.11,-28.2968,0	0/1:103:51,52:51:1785:52:1833:-134.226,0,-129.923	1/1:90:0,90:0:0:90:3199:-288.083,-27.0927,0	1/1:152:0,152:0:0:152:5371:-483.408,-45.7566,0	0/1:191:93,98:93:3276:98:3464:-254.32,0,-237.564	0/1:209:111,98:111:3903:98:3465:-249.083,0,-288.549	1/1:148:0,148:0:0:148:5281:-475.2,-44.5524,0	0/1:170:66,104:66:2376:104:3705:-282.369,0,-162.922	1/1:162:0,162:0:0:162:5746:-517.178,-48.7669,0	1/1:142:1,141:1:36:141:5009:-447.081,-39.148,0	0/1:108:53,55:53:1888:55:1936:-141.983,0,-137.497	0/1:136:60,76:60:2122:76:2640:-196.863,0,-150.3	0/1:108:49,59:49:1748:59:2093:-156.117,0,-125.093	1/1:174:0,174:0:0:174:6186:-556.752,-52.3792,0	0/1:33:12,21:12:432:21:744:-57.3485,0,-29.2872	0/1:98:43,55:43:1516:55:1958:-146.9,0,-107.229	1/1:94:1,93:1:32:93:3295:-293.527,-25.0975,0	1/1:80:0,80:0:0:80:2863:-257.878,-24.0824,0	0/1:191:90,101:90:3188:101:3604:-267.068,0,-229.647	1/1:251:1,250:1:36:250:8912:-798.368,-71.9603,0	1/1:109:0,109:0:0:109:3868:-348.271,-32.8123,0	1/1:149:0,149:0:0:149:5319:-478.778,-44.8535,0	0/1:58:32,26:32:1135:26:916:-65.2921,0,-84.9983	1/1:65:1,64:1:36:64:2255:-198.934,-15.9687,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:11:0,11:0:0:11:393:-35.7108,-3.31133,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:443:224,219:224:7917:219:7796:-568.299,0,-579.206	0/1:54:23,31:23:828:31:1086:-81.7919,0,-58.5885	1/1:180:0,180:0:0:180:6385:-573.768,-54.1854,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:63:35,28:35:1206:28:1008:-72.0715,0,-89.8736	1/1:66:0,66:0:0:66:2348:-211.56,-19.868,0	1/1:122:0,122:0:0:122:4330:-389.829,-36.7257,0	1/1:222:0,222:0:0:222:7901:-711.079,-66.8287,0	1/1:168:0,168:0:0:168:5890:-530.172,-50.573,0	0/1:35:17,18:17:596:18:640:-47.3933,0,-43.4317	0/1:65:46,19:46:1620:19:680:-41.9425,0,-126.519	1/1:97:0,97:0:0:97:3465:-312.023,-29.1999,0	1/1:95:0,95:0:0:95:3387:-305.034,-28.5979,0	0/1:117:61,56:61:2179:56:2012:-146.106,0,-161.155	1/1:45:1,44:1:36:44:1576:-138.531,-9.94808,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:107:0,107:0:0:107:3832:-344.112,-32.2102,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:12:3,9:3:108:9:320:-25.5244,0,-6.46281	1/1:94:1,93:1:36:93:3298:-293.433,-24.6985,0	0/1:51:30,21:30:1076:21:752:-52.6504,0,-81.8003	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:18:0,18:0:0:18:644:-58.2897,-5.41854,0	1/1:81:0,81:0:0:81:2896:-260.852,-24.3834,0	0/1:223:107,116:107:3758:116:4135:-305.182,0,-271.29	0/1:5:1,4:1:36:4:136:-11.0694,0,-2.09312	0/1:91:43,48:43:1522:48:1701:-125.979,0,-109.877	1/1:139:2,137:2:72:137:4903:-434.555,-35.0064,0	0/1:51:17,34:17:612:34:1220:-94.7369,0,-40.0609	1/1:43:1,42:1:36:42:1488:-130.573,-9.34602,0	0/1:115:43,72:43:1531:72:2562:-196.115,0,-103.464	1/1:92:0,92:0:0:92:3308:-297.845,-27.6948,0	0/1:113:50,63:50:1783:63:2226:-166.585,0,-126.736	1/1:57:0,57:0:0:57:2039:-183.773,-17.1587,0	1/1:172:0,172:0:0:172:6142:-552.866,-51.7772,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	1/1:54:0,54:0:0:54:1928:-173.777,-16.2556,0	1/1:88:0,88:0:0:88:3128:-281.678,-26.4906,0	1/1:160:0,160:0:0:160:5683:-511.53,-48.1648,0	0/1:142:61,81:61:2159:81:2903:-218.737,0,-151.828	1/1:48:0,48:0:0:48:1716:-154.519,-14.4494,0	0/1:81:40,41:40:1424:41:1476:-108.744,0,-104.074	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:72:33,39:33:1141:39:1381:-102.83,0,-81.3164	1/1:71:0,71:0:0:71:2505:-225.597,-21.3731,0	1/1:150:0,150:0:0:150:5348:-481.436,-45.1545,0	0/1:165:86,79:86:3051:79:2763:-199.229,0,-225.149	1/1:197:0,197:0:0:197:7036:-632.967,-59.3029,0	1/1:177:0,177:0:0:177:6306:-567.569,-53.2823,0	0/1:286:129,157:129:4558:157:5611:-418.975,0,-324.292	1/1:76:0,76:0:0:76:2724:-245.374,-22.8783,0	0/1:163:71,92:71:2485:92:3307:-248.719,0,-174.833	1/1:203:1,201:1:36:201:7165:-641.228,-57.5692,0	1/1:98:0,98:0:0:98:3475:-312.933,-29.5009,0	0/1:174:81,93:81:2844:93:3306:-245.322,0,-203.82	0/1:168:95,73:95:3316:73:2616:-184.972,0,-248.087	1/1:110:0,110:0:0:110:3928:-353.704,-33.1133,0	1/1:293:1,292:1:36:292:10393:-931.034,-84.6035,0
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chr11	20996651	.	C	T	27616.8	PASS	AB=0.526468;ABP=21.9767;AC=40;AF=0.215054;AN=186;AO=1654;CIGAR=1X;DP=6970;DPB=6970;DPRA=1.33015;EPP=3594.63;EPPR=11542.2;GTI=3;LEN=1;MEANALT=1.02174;MQM=52.295;MQMR=58.4825;NS=93;NUMALT=1;ODDS=0.0892364;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58912;QR=188527;RO=5314;RPL=1654;RPP=3594.63;RPPR=11542.2;RPR=0;RUN=1;SAF=1654;SAP=3594.63;SAR=0;SRF=5314;SRP=11542.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5124	0/1:126:51,75:51:1820:75:2680:-202.741,0,-125.781	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.548	0/1:135:53,82:53:1895:82:2926:-221.133,0,-130.026	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.139	0/0:62:62,0:62:2220:0:0:0,-18.6639,-199.941	0/0:91:90,1:90:3191:1:36:0,-23.8023,-283.013	0/0:56:56,0:56:1980:0:0:0,-16.8577,-178.039	0/1:47:21,26:21:756:26:932:-68.9788,0,-54.1973	0/0:65:65,0:65:2295:0:0:0,-19.5669,-206.739	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.824	0/1:56:41,15:41:1456:15:536:-31.4622,0,-114.346	0/1:69:30,39:30:1072:39:1392:-104.566,0,-75.9952	0/0:72:72,0:72:2549:0:0:0,-21.6742,-229.532	0/1:45:23,22:23:816:22:780:-56.2958,0,-60.212	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.08	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.767	0/1:53:25,28:25:888:28:992:-73.4369,0,-64.0398	0/1:31:15,16:15:540:16:572:-42.3266,0,-39.5218	0/1:108:51,57:51:1815:57:2035:-148.509,0,-131.116	0/0:73:73,0:73:2593:0:0:0,-21.9752,-232.906	0/1:156:55,101:55:1951:101:3611:-275.802,0,-128.831	0/1:18:8,10:8:280:10:356:-26.7514,0,-20.102	0/0:85:85,0:85:2995:0:0:0,-25.5875,-268.575	0/0:66:66,0:66:2345:0:0:0,-19.868,-210.641	0/1:258:115,143:115:4024:143:5090:-378.825,0,-284.519	0/0:158:158,0:158:5588:0:0:0,-47.5627,-502.584	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7198	0/0:278:278,0:278:9841:0:0:0,-83.6863,-885.235	0/1:163:65,97:65:2291:97:3452:-259.683,0,-157.202	0/0:71:71,0:71:2514:0:0:0,-21.3731,-226.385	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45637	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3099	.:.:.:.:.:.:.:.	0/1:158:83,75:83:2967:75:2663:-191.248,0,-219.682	0/1:194:100,94:100:3547:94:3314:-239.004,0,-260.5	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.838	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07869	0/1:98:42,56:42:1493:56:1987:-148.807,0,-104.982	0/0:25:25,0:25:868:0:0:0,-7.52575,-78.3912	0/0:89:89,0:89:3143:0:0:0,-26.7917,-282.08	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.793	0/0:42:41,1:41:1455:1:36:0,-9.05184,-127.182	0/1:37:26,11:26:923:11:396:-24.6036,0,-72.231	0/1:112:50,62:50:1784:62:2212:-165.227,0,-126.843	0/0:176:174,2:174:6158:2:72:0,-46.1576,-546.966	0/0:100:100,0:100:3543:0:0:0,-30.103,-317.802	0/1:98:43,55:43:1527:55:1968:-146.807,0,-108.148	0/0:162:162,0:162:5733:0:0:0,-48.7669,-515.817	0/1:6:3,3:3:108:3:108:-8.2498,0,-8.26899	0/0:94:92,2:92:3284:2:68:0,-21.844,-288.921	0/0:45:45,0:45:1583:0:0:0,-13.5463,-142.724	0/1:9:8,1:8:288:1:36:-0.885298,0,-23.5508	0/0:87:87,0:87:3075:0:0:0,-26.1896,-276.372	0/1:25:17,8:17:597:8:283:-17.7456,0,-46.4985	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.3097	0/0:68:68,0:68:2402:0:0:0,-20.47,-216.057	0/1:114:63,51:63:2232:51:1807:-127.845,0,-166.779	0/1:8:3,5:3:108:5:180:-13.9579,0,-7.66693	0/1:182:71,111:71:2504:111:3959:-298.315,0,-170.354	0/0:189:188,1:188:6688:1:36:0,-53.3032,-595.976	0/1:67:37,30:37:1315:30:1071:-76.2127,0,-98.2848	0/0:45:44,0:44:1542:0:0:0,-13.2453,-138.333	0/1:93:43,50:43:1509:50:1790:-131.443,0,-107.992	0/0:101:101,0:101:3581:0:0:0,-30.404,-322.312	0/1:18:6,12:6:216:12:424:-32.8983,0,-14.372	0/0:85:85,0:85:3036:0:0:0,-25.5875,-268.651	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.632	0/1:25:15,10:15:540:10:360:-24.9644,0,-41.4108	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.348	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.3909	0/0:122:122,0:122:4313:0:0:0,-36.7257,-387.508	0/1:65:36,29:36:1263:29:1040:-73.9206,0,-94.3196	0/0:155:154,1:154:5488:1:36:0,-43.0651,-487.971	0/1:91:44,47:44:1548:47:1688:-124.541,0,-111.812	0/1:9:6,3:6:216:3:108:-7.35552,0,-17.0757	0/1:55:21,34:21:748:34:1211:-92.4638,0,-51.084	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.6974	0/0:174:174,0:174:6196:0:0:0,-52.3792,-557.428	0/1:83:45,38:45:1589:38:1364:-97.6924,0,-118.168	0/0:35:35,0:35:1215:0:0:0,-10.536,-109.601	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.623	0/1:105:65,40:65:2310:40:1428:-95.3929,0,-176.453	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.35	0/1:58:32,26:32:1144:26:920:-65.3278,0,-85.7537	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.089	0/0:39:39,0:39:1375:0:0:0,-11.7402,-123.801	0/1:90:42,48:42:1483:48:1703:-125.841,0,-106.622	0/1:52:21,31:21:747:31:1074:-80.6168,0,-51.8723	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.629	0/0:74:73,1:73:2580:1:36:0,-18.6848,-228.791
chr11	21000377	.	C	T	48955.8	PASS	AB=0.498844;ABP=3.0605;AC=39;AF=0.209677;AN=186;AO=2167;CIGAR=1X;DP=10137;DPB=10137;DPRA=1.06941;EPP=4708.59;EPPR=17296.6;GTI=0;LEN=1;MEANALT=1;MQM=59.9954;MQMR=59.989;NS=93;NUMALT=1;ODDS=4.43539;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77277;QR=282209;RO=7964;RPL=909;RPP=125.063;RPPR=181.903;RPR=1258;RUN=1;SAF=909;SAP=125.063;SAR=1258;SRF=3577;SRP=181.903;SRR=4387;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:79:79,0:79:2775:0:0:0,-23.7814,-249.991	0/1:79:29,50:29:1021:50:1796:-138.141,0,-68.4189	0/0:189:188,0:188:6664:0:0:0,-56.5936,-599.479	0/1:130:65,65:65:2297:65:2336:-171.365,0,-167.856	0/0:110:110,0:110:3897:0:0:0,-33.1133,-350.926	0/0:75:75,0:75:2656:0:0:0,-22.5772,-239.285	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726	0/0:141:141,0:141:4984:0:0:0,-42.4452,-448.71	0/1:154:78,76:78:2760:76:2705:-197.334,0,-202.282	0/0:94:94,0:94:3337:0:0:0,-28.2968,-300.548	0/0:146:146,0:146:5191:0:0:0,-43.9504,-467.333	0/1:203:115,88:115:4077:88:3109:-218.929,0,-306.007	0/1:156:84,72:84:2990:72:2536:-181.53,0,-222.371	0/0:139:139,0:139:4882:0:0:0,-41.8432,-439.534	0/1:123:64,59:64:2221:59:2100:-152.243,0,-163.123	0/0:131:131,0:131:4660:0:0:0,-39.4349,-419.562	0/0:89:89,0:89:3168:0:0:0,-26.7917,-285.346	0/1:78:43,35:43:1495:35:1248:-89.1445,0,-111.359	0/1:76:30,46:30:1051:46:1656:-126.45,0,-72.0214	0/1:116:51,65:51:1803:65:2320:-174.139,0,-127.629	0/0:144:144,0:144:5137:0:0:0,-43.3483,-462.472	0/1:61:20,41:20:711:41:1467:-113.963,0,-45.9528	0/1:94:60,34:60:2111:34:1216:-81.4497,0,-161.96	0/0:55:55,0:55:1950:0:0:0,-16.5566,-175.775	0/0:93:93,0:93:3319:0:0:0,-27.9958,-298.926	0/1:185:97,88:97:3459:88:3115:-224.886,0,-255.832	0/0:226:226,0:226:8053:0:0:0,-68.0328,-724.792	0/0:64:64,0:64:2270:0:0:0,-19.2659,-204.562	0/0:205:205,0:205:7311:0:0:0,-61.7111,-658.041	0/1:106:49,57:49:1732:57:2035:-151.512,0,-124.253	0/0:88:88,0:88:3136:0:0:0,-26.4906,-282.467	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:351:173,178:173:6145:178:6320:-463.23,0,-447.492	0/1:55:33,22:33:1179:22:784:-54.3273,0,-89.8606	0/0:132:132,0:132:4652:0:0:0,-39.736,-418.845	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:127:56,71:56:1994:71:2544:-190.98,0,-141.502	0/0:57:57,0:57:2013:0:0:0,-17.1587,-181.441	0/0:151:150,1:150:5338:1:36:0,-41.8573,-476.955	0/0:135:135,0:135:4814:0:0:0,-40.639,-433.416	0/0:117:117,0:117:4140:0:0:0,-35.2205,-372.783	0/1:106:56,50:56:1973:50:1796:-130.013,0,-145.934	0/1:126:68,58:68:2423:58:2070:-148.639,0,-180.396	0/0:178:176,2:176:6241:2:72:0,-46.7466,-554.952	0/0:71:70,1:70:2496:1:36:0,-17.7749,-221.267	0/1:112:52,60:52:1859:60:2143:-159.422,0,-133.874	0/0:62:62,0:62:2177:0:0:0,-18.6639,-196.193	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:94:93,0:93:3250:0:0:0,-27.9958,-292.512	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/1:11:5,6:5:176:6:212:-16.1135,0,-12.8737	0/0:129:129,0:129:4574:0:0:0,-38.8329,-411.826	0/1:26:13,13:13:451:13:464:-34.2707,0,-33.093	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:90:90,0:90:3194:0:0:0,-27.0927,-287.68	0/1:177:98,79:98:3498:79:2814:-200.214,0,-261.745	.:.:.:.:.:.:.:.	0/1:149:71,78:71:2536:78:2804:-207.746,0,-183.638	0/0:156:153,3:153:5421:3:108:0,-36.8855,-477.947	0/1:92:52,40:52:1809:40:1421:-100.491,0,-135.392	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.831	0/1:129:55,74:55:1955:74:2641:-199.102,0,-137.392	0/0:99:98,1:98:3480:1:36:0,-26.2037,-309.813	0/1:86:53,33:53:1864:33:1179:-80.5286,0,-142.148	0/0:42:41,0:41:1442:0:0:0,-12.3422,-129.696	0/0:94:94,0:94:3301:0:0:0,-28.2968,-297.309	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/0:94:93,1:93:3300:1:36:0,-24.6985,-293.62	0/0:136:136,0:136:4809:0:0:0,-40.9401,-432.932	0/0:253:252,0:252:8955:0:0:0,-75.8596,-805.578	0/1:116:63,53:63:2260:53:1896:-135.999,0,-168.743	0/0:222:222,0:222:7843:0:0:0,-66.8287,-705.902	0/1:95:47,48:47:1670:48:1728:-127.207,0,-121.988	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:104:51,53:51:1817:53:1886:-138.71,0,-132.502	0/0:139:139,0:139:4951:0:0:0,-41.8432,-445.696	0/0:162:162,0:162:5729:0:0:0,-48.7669,-515.731	0/1:106:58,48:58:2054:48:1703:-121.647,0,-153.221	0/0:149:149,0:149:5296:0:0:0,-44.8535,-476.777	0/0:103:103,0:103:3648:0:0:0,-31.0061,-328.525	0/1:257:128,129:128:4507:129:4612:-337.866,0,-328.436	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:132:70,62:70:2444:62:2215:-159.878,0,-180.469	0/0:137:137,0:137:4826:0:0:0,-41.2411,-434.497	0/0:90:90,0:90:3163:0:0:0,-27.0927,-284.896	0/1:214:99,115:99:3480:115:4078:-302.786,0,-248.991	0/1:137:58,79:58:2028:79:2816:-212.439,0,-141.547	0/0:110:109,0:109:3887:0:0:0,-32.8123,-349.665	0/0:266:265,0:265:9356:0:0:0,-79.7729,-841.773
chr11	21000412	.	G	A	94836.9	PASS	AB=0.48476;ABP=7.84194;AC=147;AF=0.790323;AN=186;AO=4446;CIGAR=1X;DP=5688;DPB=5688;DPRA=0;EPP=9657.38;EPPR=2693.46;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.9881;MQMR=59.9919;NS=93;NUMALT=1;ODDS=1.232;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158567;QR=44363;RO=1239;RPL=4446;RPP=9657.38;RPPR=2693.46;RPR=0;RUN=1;SAF=0;SAP=9657.38;SAR=4446;SRF=0;SRP=2693.46;SRR=1239;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1641:-147.977,-13.8474,0	0/1:60:40,20:40:1432:20:720:-47.067,0,-111.116	1/1:131:0,131:0:0:131:4669:-420.372,-39.4349,0	0/1:76:45,31:45:1607:31:1097:-76.1597,0,-122.041	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:54:0,54:0:0:54:1925:-173.525,-16.2556,0	1/1:56:0,56:0:0:56:2006:-180.813,-16.8577,0	1/1:80:0,80:0:0:80:2873:-258.806,-24.0824,0	0/1:119:58,61:58:2080:61:2177:-160.372,0,-151.648	1/1:58:0,58:0:0:58:2059:-185.579,-17.4597,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:94:39,55:39:1378:55:1976:-149.818,0,-96.0204	0/1:77:38,39:38:1364:39:1391:-102.309,0,-99.8814	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:59:24,34:24:855:34:1216:-91.9271,0,-59.4508	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	0/1:38:16,22:16:572:22:784:-59.4448,0,-40.3743	0/1:46:29,17:29:1040:17:612:-41.5661,0,-80.067	0/1:75:42,33:42:1508:33:1172:-83.2097,0,-113.437	1/1:109:0,109:0:0:109:3873:-348.764,-32.8123,0	0/1:23:14,9:14:500:9:324:-22.5822,0,-38.4125	0/1:38:17,21:17:612:21:748:-56.2062,0,-43.9743	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:47:0,47:0:0:47:1669:-150.493,-14.1484,0	0/1:113:56,57:56:2008:57:2003:-146.522,0,-146.977	1/1:98:0,98:0:0:98:3466:-312.152,-29.5009,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:121:0,121:0:0:121:4340:-390.774,-36.4246,0	0/1:67:36,31:36:1292:31:1074:-76.795,0,-96.4148	1/1:50:0,50:0:0:50:1777:-160.211,-15.0515,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:194:105,89:105:3768:89:3165:-226.676,0,-280.919	0/1:40:13,27:13:468:27:968:-75.3962,0,-30.4184	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:74:37,37:37:1328:37:1302:-95.2027,0,-97.546	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:96:0,96:0:0:96:3403:-306.482,-28.8989,0	1/1:80:0,80:0:0:80:2853:-257.007,-24.0824,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:81:33,48:33:1184:48:1698:-128.719,0,-82.4849	0/1:83:45,38:45:1616:38:1364:-98.0752,0,-120.745	1/1:115:1,114:1:36:114:4076:-363.428,-31.0202,0	1/1:44:0,44:0:0:44:1542:-139.068,-13.2453,0	0/1:61:35,26:35:1247:26:936:-66.1966,0,-94.1712	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:72:0,72:0:0:72:2573:-231.818,-21.6742,0	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/1:9:4,5:4:144:5:170:-12.9247,0,-10.6043	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:48:0,48:0:0:48:1698:-153.104,-14.4494,0	0/1:98:46,52:46:1637:52:1872:-139.258,0,-118.116	.:.:.:.:.:.:.:.	0/1:75:44,31:44:1584:31:1112:-77.8141,0,-120.274	1/1:111:2,109:2:72:109:3878:-342.376,-26.5776,0	0/1:55:23,32:23:828:32:1139:-86.2617,0,-58.2875	1/1:44:0,44:0:0:44:1556:-140.332,-13.2453,0	0/1:95:55,40:55:1960:40:1413:-98.8674,0,-148.064	1/1:80:1,79:1:36:79:2825:-250.889,-20.4841,0	0/1:39:20,19:20:712:19:680:-49.789,0,-52.6665	1/1:36:0,36:0:0:36:1277:-115.101,-10.8371,0	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:57:1,55:1:32:55:1972:-174.608,-13.9233,0	1/1:87:0,86:0:0:86:3069:-276.078,-25.8886,0	1/1:175:0,175:0:0:175:6254:-562.956,-52.6803,0	0/1:58:22,36:22:792:36:1296:-99.4842,0,-54.1459	1/1:120:0,120:0:0:120:4246:-382.321,-36.1236,0	0/1:41:21,20:21:752:20:720:-52.7865,0,-55.664	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:57:29,28:29:1040:28:1008:-73.8776,0,-76.7557	1/1:67:0,67:0:0:67:2380:-214.456,-20.169,0	1/1:105:0,105:0:0:105:3726:-335.54,-31.6082,0	0/1:53:28,25:28:995:25:900:-65.3664,0,-73.9094	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:47:0,47:0:0:47:1680:-151.487,-14.1484,0	0/1:115:63,52:63:2264:52:1872:-134.141,0,-169.404	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:53:26,27:26:924:27:938:-68.7762,0,-67.5231	1/1:51:1,50:1:36:50:1781:-156.973,-11.7543,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:110:61,49:61:2180:49:1752:-124.851,0,-163.353	0/1:68:43,25:43:1548:25:888:-59.769,0,-119.143	1/1:62:0,62:0:0:62:2187:-197.081,-18.6639,0	1/1:122:0,122:0:0:122:4357:-392.304,-36.7257,0
chr11	21075725	.	TCGCT	GCGCT,GCACT	157664	PASS	AB=0.503799,0.48948;ABP=3.43926,6.29987;AC=141,43;AF=0.766304,0.233696;AN=184;AO=5633,1688;CIGAR=1X4M,1X1M1X2M;DP=7371;DPB=7371.6;DPRA=62.0815,1.32279;EPP=12234.9,3668.46;EPPR=16.0391;GTI=1;LEN=1,5;MEANALT=1.94382,2.48936;MQM=59.9258,59.3774;MQMR=60;NS=92;NUMALT=2;ODDS=0.517186;PAIRED=0,0;PAIREDR=0;PAO=1.33333,1.33333;PQA=46.6667,46.6667;PQR=0;PRO=0;QA=201448,59702;QR=208;RO=6;RPL=5633,1688;RPP=12234.9,3668.46;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12234.9,3668.46;SAR=5633,1688;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41,0:0:0:41,0:1468,0:-132.416,-12.3422,0,-132.416,-12.3422,-132.416	1/2:83:0,55,28:0:0:55,28:1972,1003:-242.94,-82.1075,-65.5509,-161.19,0,-152.761	1/1:140:0,140,0:0:0:140,0:4999,0:-450.008,-42.1442,0,-450.008,-42.1442,-450.008	1/2:209:0,109,99:0:0:109,99:3892,3439:-596.823,-279.512,-246.699,-317.303,0,-287.501	1/1:22:0,22,0:0:0:22,0:779,0:-70.4321,-6.62266,0,-70.4321,-6.62266,-70.4321	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:58:2,56,0:2:72:56,0:2008,0:-173.887,-10.623,0,-174.489,-16.8577,-180.364	1/1:80:0,79,0:0:0:79,0:2807,0:-252.464,-23.7814,0,-252.464,-23.7814,-252.464	1/2:110:0,63,46:0:0:63,46:2244,1605:-313.391,-130.483,-111.518,-183.009,0,-169.161	1/1:75:0,74,0:0:0:74,0:2644,0:-237.811,-22.2762,0,-237.811,-22.2762,-237.811	1/1:47:0,46,0:0:0:46,0:1644,0:-147.891,-13.8474,0,-147.891,-13.8474,-147.891	1/2:106:0,49,57:0:0:49,57:1725,1989:-302.244,-161.813,-147.062,-140.781,0,-123.623	1/2:80:0,35,45:0:0:35,45:1251,1574:-230.071,-128.066,-117.53,-102.358,0,-88.8119	1/1:78:0,78,0:0:0:78,0:2779,0:-250.351,-23.4803,0,-250.351,-23.4803,-250.351	1/2:85:0,42,43:0:0:42,43:1491,1523:-245.897,-124.411,-111.768,-121.841,0,-108.896	1/1:55:0,55,0:0:0:55,0:1946,0:-175.415,-16.5567,0,-175.415,-16.5567,-175.415	1/1:22:0,22,0:0:0:22,0:788,0:-71.2448,-6.62266,0,-71.2448,-6.62266,-71.2448	1/2:31:0,16,15:0:0:16,15:564,528:-89.2103,-43.2884,-38.4719,-46.2738,0,-41.7584	1/2:53:0,28,25:0:0:28,25:995,880:-153.022,-71.9404,-63.5116,-81.4352,0,-73.9094	1/2:184:0,101,81:0:0:101,81:3612,2906:-531.525,-237.001,-206.597,-294.527,0,-270.144	1/1:160:0,159,0:0:0:159,0:5696,0:-512.449,-47.8638,0,-512.449,-47.8638,-512.449	1/2:97:0,30,67:0:0:30,67:1071,2402:-283.523,-196.209,-187.178,-87.6205,0,-67.4515	1/2:110:0,60,49:0:0:60,49:2148,1755:-318.059,-143.12,-125.058,-174.937,0,-160.187	1/1:97:0,96,0:0:0:96,0:3440,0:-309.323,-28.8989,0,-309.323,-28.8989,-309.323	1/1:74:1,73,0:1:30:73,0:2597,0:-230.978,-19.2767,0,-231.279,-21.9752,-233.677	1/2:233:0,133,97:0:0:133,97:4740,3430:-665.74,-279.372,-239.335,-386.382,0,-357.182	1/1:144:0,143,1:0:0:143,1:5128,36:-461.297,-43.0473,0,-458.359,-39.75,-458.058	1/1:45:0,45,0:0:0:45,0:1604,0:-144.605,-13.5464,0,-144.605,-13.5464,-144.605	1/1:150:0,150,0:0:0:150,0:5357,0:-482.262,-45.1545,0,-482.262,-45.1545,-482.262	1/2:103:0,67,36:0:0:67,36:2408,1265:-299.591,-103.142,-82.973,-196.803,0,-185.965	1/1:82:0,80,1:0:0:80,1:2860,31:-257.206,-24.0824,0,-254.718,-21.5838,-254.417	2/2:2:0,0,2:0:0:0,2:0,68:-6.45793,-6.45793,-6.45793,-0.60206,-0.60206,0	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	.:.:.:.:.:.:.:.	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/2:222:0,100,122:0:0:100,122:3579,4330:-644.927,-353.07,-322.967,-292.214,0,-255.488	1/2:85:0,36,49:0:0:36,49:1288,1755:-248.501,-143.472,-132.635,-105.387,0,-90.636	1/1:51:0,51,0:0:0:51,0:1816,0:-163.651,-15.3525,0,-163.651,-15.3525,-163.651	2/2:1:0,0,0:0:0:0,0:0,0:0,0,0,0,0,0	1/2:92:0,36,50:0:0:36,50:1292,1785:-250.913,-145.524,-134.687,-105.403,0,-90.3512	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/1:113:0,112,0:0:0:112,0:4011,0:-360.815,-33.7154,0,-360.815,-33.7154,-360.815	1/1:57:0,57,0:0:0:57,0:2043,0:-184.141,-17.1587,0,-184.141,-17.1587,-184.141	1/1:49:0,49,0:0:0:49,0:1756,0:-158.324,-14.7505,0,-158.324,-14.7505,-158.324	1/2:48:0,13,34:0:0:13,34:468,1193:-135.153,-96.9638,-93.0504,-38.2606,0,-28.0256	1/2:84:0,45,39:0:0:45,39:1616,1396:-245.979,-114.154,-100.607,-132.184,0,-120.443	1/1:79:0,79,0:0:0:79,0:2824,0:-254.128,-23.7814,0,-254.128,-23.7814,-254.128	1/1:90:0,90,0:0:0:90,0:3232,0:-291.093,-27.0927,0,-291.093,-27.0927,-291.093	1/2:94:0,45,48:0:0:45,48:1608,1704:-269.978,-138.87,-125.323,-131.153,0,-116.703	1/1:118:0,117,0:0:0:117,0:4188,0:-376.742,-35.2205,0,-376.742,-35.2205,-376.742	.:.:.:.:.:.:.:.	1/1:113:2,109,1:2:71:109,1:3908,36:-345.168,-27.0296,0,-342.833,-29.874,-348.317	1/1:53:0,53,0:0:0:53,0:1892,0:-170.558,-15.9546,0,-170.558,-15.9546,-170.558	1/2:4:0,2,2:0:0:2,2:72,70:-11.9251,-6.04527,-5.44321,-6.23466,0,-5.6326	1/1:104:0,103,0:0:0:103,0:3676,0:-330.782,-31.0061,0,-330.782,-31.0061,-330.782	1/2:37:0,19,18:0:0:19,18:684,648:-108.958,-53.1644,-47.4448,-56.1531,0,-50.7346	2/2:1:0,0,1:0:0:0,1:0,34:-3.39891,-3.39891,-3.39891,-0.30103,-0.30103,0	1/1:4:0,4,0:0:0:4,0: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chr11	21353512	.	C	T	16826.2	PASS	AB=0.417979;ABP=155.113;AC=40;AF=0.215054;AN=186;AO=1093;CIGAR=1X;DP=5981;DPB=5981;DPRA=1.08282;EPP=2376.43;EPPR=10615;GTI=2;LEN=1;MEANALT=1;MQM=59.978;MQMR=59.9996;NS=93;NUMALT=1;ODDS=0.597259;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=39135;QR=175055;RO=4887;RPL=0;RPP=2376.43;RPPR=10615;RPR=1093;RUN=1;SAF=1093;SAP=2376.43;SAR=0;SRF=4887;SRP=10615;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:41:29,12:29:1025:12:428:-26.5166,0,-80.2185	0/0:113:113,0:113:4064:0:0:0,-34.0164,-365.945	0/1:93:43,50:43:1529:50:1800:-134.286,0,-109.905	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:32:15,17:15:536:17:608:-45.4191,0,-38.9419	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:81:38,43:38:1364:43:1544:-114.87,0,-98.6773	0/1:85:35,50:35:1260:50:1800:-136.695,0,-88.1179	0/0:126:126,0:126:4512:0:0:0,-37.9298,-406.248	0/1:55:27,28:27:960:28:1008:-74.4797,0,-70.1596	0/0:81:81,0:81:2904:0:0:0,-24.3834,-261.595	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:43:24,19:24:860:19:684:-48.946,0,-64.7775	0/1:31:7,24:7:252:24:864:-68.7506,0,-13.697	0/1:69:49,20:49:1752:20:716:-43.9966,0,-137.193	0/0:125:125,0:125:4477:0:0:0,-37.6287,-403.097	0/1:47:27,20:27:968:20:720:-50.9804,0,-73.289	0/1:33:17,16:17:612:16:572:-41.879,0,-45.4794	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:132:91,41:91:3260:41:1472:-93.0402,0,-253.885	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.604	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:141:141,0:141:5048:0:0:0,-42.4452,-454.465	0/1:110:82,28:82:2948:28:1008:-57.7327,0,-232.44	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:172:86,86:86:3084:86:3061:-223.941,0,-226.011	0/1:74:56,18:56:2012:18:648:-36.3757,0,-159.077	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	.:.:.:.:.:.:.:.	0/1:84:55,29:55:1964:29:1040:-68.6278,0,-151.749	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:58:45,13:45:1616:13:464:-24.6378,0,-128.27	0/1:54:31,23:31:1108:23:828:-58.5881,0,-83.7754	0/0:105:103,2:103:3692:2:72:0,-24.7714,-325.645	0/0:57:56,0:56:2016:0:0:0,-16.8577,-181.353	0/1:65:41,24:41:1468:24:860:-58.1549,0,-112.849	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:17:6,11:6:216:11:388:-30.1399,0,-14.673	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.365	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:71:71,0:71:2536:0:0:0,-21.3731,-228.491	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:33:33,0:33:1168:0:0:0,-9.93399,-105.427	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:130:66,64:66:2364:64:2285:-166.776,0,-173.884	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:104:64,40:64:2296:40:1435:-98.1406,0,-175.594	0/0:103:101,2:101:3636:2:72:0,-24.1694,-320.606	0/1:38:23,15:23:824:15:536:-37.1357,0,-63.0442	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:94:73,21:73:2596:21:756:-40.0704,0,-205.593	0/0:144:144,0:144:5168:0:0:0,-43.3483,-465.259	0/1:54:30,24:30:1072:24:860:-61.4662,0,-80.5368	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/1:107:85,22:85:3044:22:758:-36.324,0,-241.98	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/1:60:41,19:41:1468:19:680:-43.4674,0,-114.354	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:42:25,17:25:892:17:612:-42.7702,0,-67.9564	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/0:109:109,0:109:3892:0:0:0,-32.8123,-350.475	0/1:76:39,37:39:1388:37:1328:-96.944,0,-102.341	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:129:80,49:80:2868:49:1756:-119.491,0,-219.524	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:76:49,27:49:1756:27:968:-64.5591,0,-135.446	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.401	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.323	0/1:195:94,101:94:3368:101:3600:-265.504,0,-244.635	0/1:68:20,48:20:716:48:1716:-134.256,0,-44.2977	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.78	0/0:73:72,1:72:2571:1:36:0,-18.3769,-228.041
chr11	21380100	.	G	A	143184	PASS	AB=0.585588;ABP=205.218;AC=147;AF=0.781915;AN=188;AO=6631;CIGAR=1X;DP=7955;DPB=7955;DPRA=0;EPP=14402;EPPR=2871.53;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.4315;MQMR=59.9235;NS=94;NUMALT=1;ODDS=3.95738;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=237194;QR=47369;RO=1321;RPL=6631;RPP=14402;RPPR=2871.53;RPR=0;RUN=1;SAF=0;SAP=14402;SAR=6631;SRF=0;SRP=2871.53;SRR=1321;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:792:-71.6,-6.62266,0	0/1:35:15,20:15:540:20:716:-54.2317,0,-38.4005	1/1:38:0,38:0:0:38:1362:-122.878,-11.4391,0	0/1:40:17,23:17:612:23:828:-62.7556,0,-43.3722	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:12:0,12:0:0:12:432:-39.213,-3.61236,0	1/1:49:0,49:0:0:49:1760:-158.679,-14.7505,0	1/1:85:0,85:0:0:85:3048:-274.244,-25.5876,0	0/1:37:18,19:18:648:19:684:-50.7334,0,-47.5138	1/1:40:0,40:0:0:40:1436:-129.534,-12.0412,0	1/1:186:0,186:0:0:186:6680:-601.227,-55.9916,0	0/1:39:20,19:20:720:19:666:-48.5044,0,-53.3886	0/1:31:10,21:10:360:21:756:-58.753,0,-23.4124	1/1:33:0,33:0:0:33:1184:-106.839,-9.93399,0	0/1:28:8,20:8:288:20:720:-56.6999,0,-17.8386	1/1:38:0,38:0:0:38:1368:-123.408,-11.4391,0	1/1:26:0,26:0:0:26:936:-84.4873,-7.82678,0	0/1:21:10,11:10:360:11:396:-29.5378,0,-26.4227	0/1:109:47,62:47:1688:62:2224:-167.505,0,-119.395	0/1:55:25,30:25:896:30:1075:-80.4718,0,-64.4037	1/1:29:0,29:0:0:29:1021:-92.1938,-8.72987,0	0/1:31:10,21:10:360:21:741:-57.6769,0,-23.4124	0/1:11:2,9:2:72:9:323:-26.1014,0,-3.52539	1/1:53:0,53:0:0:53:1885:-169.602,-15.9546,0	1/1:34:0,34:0:0:34:1220:-110.098,-10.235,0	0/1:124:36,88:36:1296:88:3153:-246.034,0,-79.6162	1/1:84:0,84:0:0:84:3016:-271.508,-25.2865,0	1/1:16:0,16:0:0:16:576:-52.1704,-4.81648,0	1/1:236:0,236:0:0:236:8465:-761.269,-71.0431,0	0/1:34:11,23:11:396:23:809:-62.8851,0,-25.7477	1/1:36:0,36:0:0:36:1281:-115.583,-10.8371,0	0/1:427:160,266:160:5732:266:9498:-726.1,0,-387.495	1/1:346:0,346:0:0:346:12396:-1114.94,-104.156,0	1/1:391:0,390:0:0:390:13942:-1252.9,-117.402,0	1/1:438:0,437:0:0:437:15591:-1402.29,-131.55,0	1/1:320:1,319:1:36:319:11382:-1020.27,-92.7313,0	0/1:81:40,41:40:1436:41:1468:-107.975,0,-105.154	0/1:67:24,43:24:852:43:1544:-119.077,0,-56.8314	1/1:177:0,177:0:0:177:6340:-570.603,-53.2823,0	1/1:183:0,183:0:0:183:6537:-588.165,-55.0885,0	0/1:39:16,23:16:576:23:824:-62.7408,0,-40.4325	1/1:142:0,142:0:0:142:5093:-458.457,-42.7463,0	1/1:77:0,77:0:0:77:2765:-249.028,-23.1793,0	1/1:21:0,21:0:0:21:756:-68.2325,-6.32163,0	1/1:32:0,32:0:0:32:1152:-103.888,-9.63296,0	0/1:42:9,33:9:324:33:1184:-94.2209,0,-16.8626	0/1:29:10,19:10:360:19:672:-52.0559,0,-24.0144	1/1:69:0,69:0:0:69:2475:-222.985,-20.7711,0	1/1:37:0,37:0:0:37:1317:-118.83,-11.1381,0	0/1:32:7,25:7:248:25:877:-69.6122,0,-13.0312	1/1:103:0,103:0:0:103:3688:-332.022,-31.0061,0	0/1:190:47,143:47:1677:143:5117:-403.437,0,-94.0195	1/1:57:0,57:0:0:57:2024:-182.398,-17.1587,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:150:60,90:60:2139:90:3232:-245.886,0,-147.608	0/1:36:11,25:11:392:25:880:-68.6621,0,-24.783	0/1:19:7,12:7:252:12:428:-33.0301,0,-17.2955	0/1:128:57,71:57:2048:71:2556:-191.639,0,-146.06	1/1:375:0,375:0:0:375:13382:-1203.71,-112.886,0	1/1:16:1,15:1:32:15:536:-45.3755,-1.61717,0	0/1:43:20,23:20:716:23:804:-59.5708,0,-51.8234	0/1:135:57,78:57:2052:78:2782:-209.966,0,-144.312	0/1:42:10,32:10:356:32:1152:-91.3442,0,-19.738	1/1:116:0,116:0:0:116:4157:-374.114,-34.9195,0	0/1:15:2,13:2:72:13:460:-37.2151,0,-2.32127	1/1:42:0,42:0:0:42:1489:-134.298,-12.6433,0	0/1:58:15,43:15:540:43:1544:-121.792,0,-31.4768	1/1:56:0,56:0:0:56:1997:-179.907,-16.8577,0	0/1:111:56,55:56:2008:55:1976:-144.686,0,-147.579	1/1:37:0,37:0:0:37:1332:-120.172,-11.1381,0	1/1:54:1,53:1:36:53:1908:-168.397,-12.6573,0	0/1:108:37,71:37:1317:71:2527:-194.953,0,-86.3186	1/1:36:0,36:0:0:36:1267:-114.311,-10.8371,0	1/1:27:0,27:0:0:27:964:-86.2968,-8.12781,0	1/1:38:1,37:1:36:37:1328:-116.224,-7.84087,0	0/1:39:14,25:14:500:25:900:-69.5762,0,-33.596	1/1:34:0,34:0:0:34:1194:-107.644,-10.235,0	0/1:15:10,5:10:360:5:180:-12.0283,0,-27.7341	0/1:273:178,95:178:6388:95:3408:-224.709,0,-492.826	0/1:29:10,19:10:360:19:680:-52.7993,0,-24.0144	1/1:36:0,36:0:0:36:1292:-116.389,-10.8371,0	1/1:114:0,114:0:0:114:4100:-369.118,-34.3174,0	0/1:58:23,35:23:820:35:1260:-96.2352,0,-56.6628	1/1:36:1,35:1:36:35:1256:-109.74,-7.23881,0	1/1:29:0,29:0:0:29:1040:-93.9015,-8.72987,0	0/1:50:18,32:18:648:32:1140:-87.8507,0,-43.6004	1/1:28:0,28:0:0:28:1000:-90.2939,-8.42884,0	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	1/1:25:0,25:0:0:25:900:-81.3037,-7.52575,0	1/1:198:0,198:0:0:198:7094:-638.251,-59.6039,0	0/1:301:143,158:143:5136:158:5650:-417.546,0,-371.64	0/1:37:28,9:28:1004:9:315:-17.5473,0,-79.5368	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:36:0,36:0:0:36:1284:-115.856,-10.8371,0
chr11	21380106	.	C	A,G	171842	PASS	AB=0.5813,0.417433;ABP=184.14,189.833;AC=147,41;AF=0.781915,0.218085;AN=188;AO=6560,1321;CIGAR=1X,1X;DP=7887;DPB=7887;DPRA=0,0.905553;EPP=14247.9,2871.53;EPPR=0;GTI=2;LEN=1,1;MEANALT=1.54255,2.08889;MQM=59.4428,59.9387;MQMR=0;NS=94;NUMALT=2;ODDS=4.51618;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=234158,47348;QR=0;RO=0;RPL=6560,1321;RPP=14247.9,2871.53;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=14247.9,2871.53;SAR=6560,1321;SRF=0;SRP=0;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22,0:0:0:22,0:788,0:-71.2391,-6.62266,0,-71.2391,-6.62266,-71.2391	1/2:34:0,20,14:0:0:20,14:716,504:-99.8718,-41.4837,-35.4631,-58.7471,0,-54.5327	1/1:38:0,38,0:0:0:38,0:1355,0:-122.242,-11.4391,0,-122.242,-11.4391,-122.242	1/2:40:0,23,17:0:0:23,17:809,612:-116.097,-50.2959,-43.3722,-66.1573,0,-61.0398	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:12:0,12,0:0:0:12,0:432,0:-39.213,-3.61236,0,-39.213,-3.61236,-39.213	1/1:49:0,49,0:0:0:49,0:1764,0:-159.039,-14.7505,0,-159.039,-14.7505,-159.039	1/1:84:0,84,0:0:0:84,0:2936,0:-264.399,-25.2865,0,-264.399,-25.2865,-264.399	1/2:37:0,19,18:0:0:19,18:684,648:-109.025,-53.2333,-47.5138,-56.1519,0,-50.7334	1/1:41:0,41,0:0:0:41,0:1472,0:-132.767,-12.3422,0,-132.767,-12.3422,-132.767	1/1:189:0,189,0:0:0:189,0:6744,0:-606.99,-56.8947,0,-606.99,-56.8947,-606.99	1/2:38:0,18,20:0:0:18,20:644,720:-111.612,-59.1082,-53.6896,-52.8629,0,-46.8423	1/2:31:0,21,10:0:0:21,10:737,360:-89.6825,-29.734,-23.4124,-60.3054,0,-57.2951	1/1:34:0,34,0:0:0:34,0:1224,0:-110.438,-10.235,0,-110.438,-10.235,-110.438	1/2:28:0,20,8:0:0:20,8:716,288:-82.247,-23.8592,-17.8386,-58.7471,0,-56.3389	1/1:37:0,37,0:0:0:37,0:1317,0:-118.819,-11.1381,0,-118.819,-11.1381,-118.819	1/1:24:0,24,0:0:0:24,0:856,0:-77.3294,-7.22472,0,-77.3294,-7.22472,-77.3294	1/2:21:0,11,10:0:0:11,10:396,360:-61.9228,-29.734,-26.4227,-32.5481,0,-29.5378	1/2:108:0,61,47:0:0:61,47:2192,1688:-316.778,-138.059,-119.696,-179.079,0,-164.93	1/2:55:0,30,25:0:0:30,25:1080,892:-161.107,-73.0739,-64.043,-88.3913,0,-80.8656	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3089,-8.42884,0,-90.3089,-8.42884,-90.3089	1/2:30:0,20,10:0:0:20,10:693,360:-86.0243,-29.734,-23.7134,-56.6456,0,-53.6353	1/2:10:0,8,2:0:0:8,2:279,72:-28.9172,-6.23466,-3.82642,-23.0401,0,-22.4381	1/1:52:0,52,0:0:0:52,0:1838,0:-165.372,-15.6536,0,-165.372,-15.6536,-165.372	1/1:34:0,34,0:0:0:34,0:1205,0:-108.747,-10.235,0,-108.747,-10.235,-108.747	1/2:125:0,88,37:0:0:88,37:3152,1332:-365.725,-109.044,-82.5536,-257.039,0,-245.901	1/1:82:0,82,0:0:0:82,0:2929,0:-263.681,-24.6845,0,-263.681,-24.6845,-263.681	1/1:16:0,16,0:0:0:16,0:576,0:-52.1704,-4.81648,0,-52.1704,-4.81648,-52.1704	1/1:237:0,237,0:0:0:237,0:8485,0:-763.079,-71.3441,0,-763.079,-71.3441,-763.079	1/2:30:0,20,10:0:0:20,10:716,360:-88.122,-29.734,-23.7134,-58.7471,0,-55.7368	1/1:37:0,37,0:0:0:37,0:1317,0:-118.715,-11.1381,0,-118.715,-11.1381,-118.715	1/2:428:0,267,160:0:0:267,160:9551,5710:-1243.58,-465.626,-385.251,-778.101,0,-729.936	1/1:345:0,345,0:0:0:345,0:12325,0:-1108.26,-103.855,0,-1108.26,-103.855,-1108.26	1/1:380:0,380,0:0:0:380,0:13538,0:-1216.91,-114.391,0,-1216.91,-114.391,-1216.91	1/1:434:0,434,0:0:0:434,0:15454,0:-1390.23,-130.647,0,-1390.23,-130.647,-1390.23	1/1:316:0,315,1:0:0:315,1:11190,36:-1006.15,-94.8245,0,-1003.21,-91.5272,-1002.91	1/2:81:0,42,39:0:0:42,39:1508,1404:-237.873,-114.919,-102.276,-123.313,0,-111.573	1/2:67:0,43,24:0:0:43,24:1540,864:-196.441,-70.8578,-57.9136,-125.942,0,-118.717	1/1:176:0,176,0:0:0:176,0:6313,0:-568.161,-52.9813,0,-568.161,-52.9813,-568.161	1/1:184:0,184,0:0:0:184,0:6544,0:-588.797,-55.3895,0,-588.797,-55.3895,-588.797	1/2:39:0,23,16:0:0:23,16:828,572:-114.554,-46.9946,-40.0709,-67.9181,0,-63.1016	1/1:141:0,141,0:0:0:141,0:5060,0:-455.477,-42.4452,0,-455.477,-42.4452,-455.477	1/1:74:0,74,0:0:0:74,0:2618,0:-235.817,-22.2762,0,-235.817,-22.2762,-235.817	1/1:21:0,21,0:0:0:21,0:756,0:-68.2325,-6.32163,0,-68.2325,-6.32163,-68.2325	1/1:33:0,33,0:0:0:33,0:1173,0:-105.771,-9.93399,0,-105.771,-9.93399,-105.771	1/2:43:0,33,10:0:0:33,10:1180,352:-125.225,-29.0079,-19.0739,-96.5699,0,-93.5596	1/2:26:0,16,10:0:0:16,10:568,360:-75.9951,-29.734,-24.9175,-46.619,0,-43.6087	1/1:68:0,68,0:0:0:68,0:2448,0:-220.551,-20.47,0,-220.551,-20.47,-220.551	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/2:33:0,26,7:0:0:26,7:932,252:-96.9343,-20.9217,-13.095,-76.3721,0,-74.2649	1/1:101:0,101,0:0:0:101,0:3609,0:-324.916,-30.404,0,-324.916,-30.404,-324.916	1/2:189:0,141,48:0:0:141,48:5053,1720:-552.709,-140.636,-98.1908,-412.431,0,-397.981	1/1:58:0,57,1:0:0:57,1:2044,36:-183.753,-17.1587,0,-180.816,-13.8615,-180.515	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:146:0,86,60:0:0:86,60:3072,2152:-426.266,-175.86,-149.971,-250.764,0,-232.702	1/2:34:0,22,12:0:0:22,12:773,432:-98.5015,-35.6088,-28.9862,-63.2494,0,-59.6371	1/2:19:0,10,9:0:0:10,9:360,324:-56.0482,-26.7827,-23.7724,-29.6246,0,-26.9154	1/2:126:0,70,56:0:0:70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chr11	21443519	.	G	A	24069.7	PASS	AB=0.541316;ABP=41.7678;AC=38;AF=0.206522;AN=184;AO=1417;CIGAR=1X;DP=5086;DPB=5086;DPRA=1.50399;EPP=3079.99;EPPR=7948.43;GTI=6;LEN=1;MEANALT=1.075;MQM=59.7904;MQMR=59.9735;NS=92;NUMALT=1;ODDS=0.391974;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50551;QR=129515;RO=3663;RPL=1417;RPP=3079.99;RPPR=7948.43;RPR=0;RUN=1;SAF=1417;SAP=3079.99;SAR=0;SRF=3663;SRP=7957.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:69:24,45:24:856:45:1616:-124.934,0,-56.59	0/0:57:57,0:57:2023:0:0:0,-17.1587,-182.341	0/1:135:54,81:54:1923:81:2892:-219.877,0,-132.706	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/0:136:136,0:136:4799:0:0:0,-40.9401,-432.068	0/1:29:17,12:17:591:12:432:-30.4904,0,-44.7854	0/0:98:98,0:98:3448:0:0:0,-29.5009,-310.533	0/0:31:31,0:31:1084:0:0:0,-9.33193,-97.8661	0/1:48:30,18:30:1064:18:640:-43.4781,0,-81.6222	0/1:32:15,17:15:532:17:612:-45.7805,0,-38.5801	0/0:36:35,0:35:1219:0:0:0,-10.536,-109.162	0/1:40:21,19:21:737:19:672:-48.7656,0,-54.6025	0/0:35:35,0:35:1230:0:0:0,-10.536,-111.002	0/0:48:48,0:48:1699:0:0:0,-14.4494,-153.195	0/1:42:22,20:22:764:20:716:-52.1245,0,-56.4363	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/1:94:51,43:51:1789:43:1540:-110.595,0,-132.993	0/0:82:82,0:82:2924:0:0:0,-24.6845,-263.393	0/1:58:21,37:21:713:37:1324:-102.001,0,-47.0249	0/1:70:20,50:20:694:50:1791:-140.388,0,-41.7083	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:208:88,120:88:3129:120:4282:-322.938,0,-219.222	0/0:91:91,0:91:3237:0:0:0,-27.3937,-291.551	0/0:21:21,0:21:739:0:0:0,-6.32163,-66.8324	0/0:81:81,0:81:2859:0:0:0,-24.3834,-257.547	0/1:118:51,65:51:1820:65:2301:-172.055,0,-128.802	0/0:93:93,0:93:3294:0:0:0,-27.9958,-296.678	0/1:7:1,6:1:36:6:207:-16.8597,0,-1.49106	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:5:5,0:5:161:0:0:0,-1.50515,-14.8066	0/1:144:66,78:66:2363:78:2772:-206.355,0,-169.579	0/1:115:62,53:62:2206:53:1883:-135.129,0,-164.186	0/0:34:34,0:34:1192:0:0:0,-10.235,-107.537	.:.:.:.:.:.:.:.	0/0:78:78,0:78:2764:0:0:0,-23.4803,-249.001	0/0:21:21,0:21:723:0:0:0,-6.32163,-65.3885	0/0:60:60,0:60:2120:0:0:0,-18.0618,-190.749	0/0:52:51,0:51:1793:0:0:0,-15.3525,-161.29	0/0:48:48,0:48:1680:0:0:0,-14.4494,-151.484	0/1:115:44,71:44:1563:71:2548:-194.95,0,-106.342	0/1:75:33,41:33:1179:41:1469:-109.775,0,-83.7813	0/0:85:85,0:85:3019:0:0:0,-25.5875,-271.942	0/0:66:66,0:66:2327:0:0:0,-19.868,-209.688	0/1:105:53,52:53:1883:52:1864:-136.43,0,-138.14	0/0:22:22,0:22:771:0:0:0,-6.62266,-69.7103	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:4:2,2:2:72:2:72:-5.63122,0,-5.6326	0/1:63:24,39:24:851:39:1389:-106.287,0,-57.9446	0/1:25:12,13:12:417:13:464:-34.5718,0,-30.3345	.:.:.:.:.:.:.:.	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/1:89:46,43:46:1614:43:1524:-110.661,0,-118.756	0/1:11:4,7:4:132:7:252:-19.7176,0,-8.89517	0/1:167:95,71:95:3387:71:2555:-179.863,0,-254.71	0/0:74:73,1:73:2603:1:36:0,-18.6779,-230.92	0/1:43:23,20:23:824:20:709:-50.6752,0,-61.539	0/0:46:46,0:46:1618:0:0:0,-13.8474,-145.905	0/1:133:61,72:61:2168:72:2571:-191.6,0,-155.35	0/0:40:39,1:39:1384:1:36:0,-8.44292,-121.261	0/1:17:6,11:6:207:11:392:-30.5025,0,-13.8494	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:77:77,0:77:2731:0:0:0,-23.1793,-246.034	0/1:14:7,7:7:252:7:252:-18.8141,0,-18.8145	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:35:35,0:35:1237:0:0:0,-10.536,-111.632	0/0:68:68,0:68:2401:0:0:0,-20.47,-216.346	0/1:56:21,35:21:730:35:1248:-95.7668,0,-49.1618	0/0:66:66,0:66:2343:0:0:0,-19.868,-211.129	0/1:93:42,51:42:1484:51:1824:-136.444,0,-105.856	0/1:9:2,7:2:72:7:244:-19.5902,0,-4.12745	0/1:54:26,28:26:932:28:985:-72.7059,0,-67.9432	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.13	0/0:69:69,0:69:2433:0:0:0,-20.7711,-219.225	0/1:95:43,52:43:1485:52:1864:-139.44,0,-105.341	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/0:50:50,0:50:1717:0:0:0,-15.0515,-154.813	0/1:81:43,38:43:1491:38:1352:-97.5965,0,-110.096	0/0:24:24,0:24:847:0:0:0,-7.22472,-76.5487	0/1:46:18,28:18:629:28:991:-75.6552,0,-43.0864	0/0:41:41,0:41:1451:0:0:0,-12.3422,-130.885	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:54:26,28:26:902:28:996:-73.6357,0,-65.2372	0/1:42:14,28:14:500:28:986:-76.4089,0,-32.6929	0/0:83:83,0:83:2946:0:0:0,-24.9855,-265.374	0/0:51:51,0:51:1795:0:0:0,-15.3525,-161.831
chr11	21762441	.	A	T	34452.8	PASS	AB=0.469333;ABP=39.3701;AC=40;AF=0.212766;AN=188;AO=2097;CIGAR=1X;DP=9956;DPB=9956;DPRA=1.21048;EPP=4556.59;EPPR=17066.4;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.8903;MQMR=59.9146;NS=94;NUMALT=1;ODDS=9.16881;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74998;QR=280929;RO=7858;RPL=0;RPP=4556.59;RPPR=17066.4;RPR=2097;RUN=1;SAF=0;SAP=4556.59;SAR=2097;SRF=0;SRP=17066.4;SRR=7858;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:51:51,0:51:1810:0:0:0,-15.3525,-163.18	0/1:85:43,42:43:1533:42:1495:-109.186,0,-112.674	0/0:193:193,0:193:6895:0:0:0,-58.0988,-620.606	0/1:258:138,120:138:4956:120:4279:-307.614,0,-367.244	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.581	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:89:89,0:89:3159:0:0:0,-26.7917,-284.523	0/0:145:145,0:145:5208:0:0:0,-43.6493,-468.847	0/1:97:56,41:56:2008:41:1464:-102.855,0,-151.793	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/0:70:70,0:70:2512:0:0:0,-21.0721,-225.702	0/1:156:70,86:70:2507:86:3072:-229.742,0,-178.914	0/1:104:56,48:56:1987:48:1720:-123.777,0,-147.797	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	0/1:84:44,40:44:1580:40:1440:-104.609,0,-117.205	0/0:83:83,0:83:2930:0:0:0,-24.9855,-263.91	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:38:18,20:18:648:20:716:-53.3286,0,-47.2127	0/1:44:25,19:25:900:19:680:-48.2838,0,-68.0757	0/1:163:79,84:79:2836:84:3004:-221.521,0,-205.783	0/0:160:159,1:159:5688:1:36:0,-44.5665,-508.418	0/1:119:41,78:41:1468:78:2799:-216.324,0,-96.5935	0/1:113:64,49:64:2281:49:1752:-123.939,0,-171.531	0/0:86:86,0:86:3083:0:0:0,-25.8886,-277.697	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.681	0/1:249:165,84:165:5924:84:2984:-193.824,0,-458.293	0/0:256:256,0:256:9170:0:0:0,-77.0637,-825.27	0/0:45:45,0:45:1598:0:0:0,-13.5463,-144.095	0/0:269:269,0:269:9631:0:0:0,-80.9771,-866.722	0/1:129:61,68:61:2178:68:2416:-178.856,0,-157.452	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.166	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8112	0/0:59:59,0:59:2111:0:0:0,-17.7608,-190.258	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.059	0/1:219:126,93:126:4497:93:3327:-233.72,0,-338.966	0/1:139:70,69:70:2500:69:2480:-181.608,0,-183.388	0/0:88:88,0:88:3128:0:0:0,-26.4906,-281.738	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:114:114,0:114:4058:0:0:0,-34.3174,-365.399	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.869	0/0:202:202,0:202:7220:0:0:0,-60.8081,-649.853	0/0:82:82,0:82:2916:0:0:0,-24.6845,-262.674	0/0:62:62,0:62:2223:0:0:0,-18.6639,-200.333	0/1:129:55,74:55:1961:74:2656:-200.45,0,-137.931	0/1:141:72,69:72:2555:69:2466:-179.744,0,-187.749	0/0:142:141,1:141:5072:1:36:0,-39.148,-453.02	0/0:117:117,0:117:4208:0:0:0,-35.2205,-378.892	0/1:127:78,49:78:2776:49:1756:-120.09,0,-211.845	0/0:115:115,0:115:4136:0:0:0,-34.6184,-372.419	0/1:16:11,5:11:396:5:172:-11.0015,0,-31.1629	0/0:191:189,2:189:6746:2:72:0,-50.66,-600.362	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6023	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/1:209:113,95:113:3982:95:3412:-244.318,0,-295.593	0/1:70:32,38:32:1148:38:1360:-101.628,0,-82.5544	0/1:20:11,9:11:396:9:320:-23.1208,0,-29.9621	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:102:102,0:102:3659:0:0:0,-30.7051,-329.509	0/1:120:67,53:67:2408:53:1892:-134.428,0,-180.853	0/1:25:17,8:17:603:8:288:-18.7393,0,-47.0738	0/1:242:115,127:115:4115:127:4551:-336.899,0,-297.677	0/0:151:150,1:150:5396:1:36:0,-41.8573,-482.166	0/1:55:30,25:30:1076:25:892:-64.0406,0,-80.5962	0/0:89:89,0:89:3164:0:0:0,-26.7917,-284.98	0/1:152:86,66:86:3092:66:2367:-167.526,0,-232.744	0/0:218:218,0:218:7804:0:0:0,-65.6245,-702.379	0/1:59:35,24:35:1244:24:848:-58.8789,0,-94.5005	0/0:91:91,0:91:3231:0:0:0,-27.3937,-291.007	0/0:60:59,1:59:2100:1:36:0,-14.4635,-185.671	0/1:49:23,26:23:819:26:932:-69.4484,0,-59.2811	0/0:244:244,0:244:8723:0:0:0,-73.4513,-785.053	0/0:115:115,0:115:4062:0:0:0,-34.6184,-365.763	0/0:143:143,0:143:5119:0:0:0,-43.0473,-460.844	0/1:215:126,89:126:4524:89:3188:-222.422,0,-342.601	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.279	0/1:129:84,45:84:3020:45:1612:-106.536,0,-233.19	0/1:31:19,12:19:680:12:424:-29.1645,0,-52.1972	0/1:136:64,72:64:2277:72:2580:-191.504,0,-164.247	0/0:120:120,0:120:4286:0:0:0,-36.1236,-385.917	0/0:186:185,1:185:6597:1:36:0,-52.3933,-590.199	0/1:66:38,28:38:1355:28:1004:-70.8079,0,-102.382	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.902	0/0:66:66,0:66:2347:0:0:0,-19.868,-211.489	0/1:102:56,46:56:2007:46:1639:-117.093,0,-150.198	0/0:29:29,0:29:1020:0:0:0,-8.72987,-92.109	0/1:91:49,42:49:1760:42:1504:-108.261,0,-131.287	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.774	0/0:88:88,0:88:3155:0:0:0,-26.4906,-284.146	0/1:166:90,76:90:3213:76:2711:-194.26,0,-239.42	0/1:75:21,54:21:752:54:1940:-152.287,0,-45.429	0/0:178:178,0:178:6355:0:0:0,-53.5833,-572.036	0/0:111:110,1:110:3948:1:36:0,-29.8161,-351.912
chr11	21899232	.	TACCA	CACCG,TACCG	114927	PASS	AB=0.461955,0.527948;ABP=37.8737,21.8237;AC=147,41;AF=0.781915,0.218085;AN=188;AO=4085,1473;CIGAR=1X3M1X,4M1X;DP=5611;DPB=5611.2;DPRA=15.0726,1.41205;EPP=8657.66,3149.69;EPPR=5.18177;GTI=5;LEN=5,1;MEANALT=1.94624,2.61364;MQM=59.9241,59.9572;MQMR=60;NS=94;NUMALT=2;ODDS=0.79388;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=139066,52552;QR=36;RO=1;RPL=12,6;RPP=8769.55,3149.69;RPPR=5.18177;RPR=4073,1467;RUN=1,1;SAF=4072,1473;SAP=8760.92,3201.59;SAR=13,0;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15,0:0:0:15,0:522,0:-47.3092,-4.51545,0,-47.3092,-4.51545,-47.3092	1/2:31:0,9,21:0:0:9,21:305,727:-83.795,-59.0667,-56.3574,-24.7116,0,-18.39	1/1:67:0,67,0:0:0:67,0:2261,0:-203.75,-20.169,0,-203.75,-20.169,-203.75	1/2:106:0,56,50:0:0:56,50:1929,1788:-302.828,-146.151,-129.293,-157.028,0,-141.977	1/1:1:0,1,0:0:0:1,0:22,0:-2.19993,-0.30103,0,-2.19993,-0.30103,-2.19993	1/1:7:0,7,0:0:0:7,0:247,0:-22.5731,-2.10721,0,-22.5731,-2.10721,-22.5731	1/1:45:0,44,0:0:0:44,0:1521,0:-136.821,-13.2453,0,-136.821,-13.2453,-136.821	1/1:45:0,45,0:0:0:45,0:1531,0:-138.076,-13.5464,0,-138.076,-13.5464,-138.076	1/2:74:0,42,32:0:0:42,32:1444,1140:-210.53,-93.2762,-80.633,-117.605,0,-107.972	1/1:45:0,45,0:0:0:45,0:1520,0:-137.073,-13.5464,0,-137.073,-13.5464,-137.073	1/1:80:0,79,0:0:0:79,0:2604,0:-234.258,-23.7814,0,-234.258,-23.7814,-234.258	1/2:93:0,41,50:0:0:41,50:1393,1767:-256.87,-143.894,-131.552,-113.043,0,-97.9911	1/2:120:0,64,54:0:0:64,54:2209,1931:-336.907,-157.451,-138.185,-179.449,0,-163.193	1/1:75:0,75,0:0:0:75,0:2604,0:-234.611,-22.5773,0,-234.611,-22.5773,-234.611	1/2:72:0,30,41:0:0:30,41:1027,1444:-200.91,-117.551,-108.52,-83.3461,0,-71.0039	1/1:67:0,66,0:0:0:66,0:2262,0:-203.533,-19.868,0,-203.533,-19.868,-203.533	1/1:54:0,54,0:0:0:54,0:1834,0:-165.338,-16.2556,0,-165.338,-16.2556,-165.338	1/2:40:0,20,20:0:0:20,20:686,720:-114.793,-59.1082,-53.0876,-56.0365,0,-50.0159	1/2:33:0,15,18:0:0:15,18:513,648:-94.8619,-53.2333,-48.7179,-41.9786,0,-36.5601	1/2:46:0,29,17:0:0:29,17:972,608:-128.641,-49.9345,-41.2046,-79.0556,0,-73.9381	1/1:86:0,85,0:0:0:85,0:2928,0:-263.538,-25.5876,0,-263.538,-25.5876,-263.538	1/2:64:0,20,44:0:0:20,44:660,1584:-182.956,-129.606,-123.586,-53.6891,0,-40.4438	1/2:28:0,12,16:0:0:12,16:419,576:-81.436,-47.3585,-43.7461,-34.4311,0,-29.6146	1/1:10:0,10,0:0:0:10,0:348,0:-31.6554,-3.0103,0,-31.6554,-3.0103,-31.6554	1/1:28:0,28,0:0:0:28,0:948,0:-85.6281,-8.42884,0,-85.6281,-8.42884,-85.6281	1/2:142:0,72,67:0:0:72,67:2442,2366:-390.753,-192.734,-171.06,-198.069,0,-177.9	1/1:125:0,121,0:0:0:121,0:3995,0:-359.414,-36.4246,0,-359.414,-36.4246,-359.414	1/1:47:0,47,0:0:0:47,0:1593,0:-143.654,-14.1484,0,-143.654,-14.1484,-143.654	1/1:107:0,105,0:0:0:105,0:3610,0:-324.795,-31.6082,0,-324.795,-31.6082,-324.795	1/2:27:0,14,13:0:0:14,13:452,460:-74.2582,-37.822,-33.6076,-36.775,0,-32.8616	1/1:39:0,39,0:0:0:39,0:1347,0:-121.527,-11.7402,0,-121.527,-11.7402,-121.527	1/2:9:0,4,5:0:0:4,5:123,176:-24.5237,-14.6799,-13.4757,-10.171,0,-8.66586	1/1:3:0,3,0:0:0:3,0:106,0:-9.88916,-0.90309,0,-9.88916,-0.90309,-9.88916	1/1:4:0,3,0:0:0:3,0:98,0:-8.79252,-0.90309,0,-8.79252,-0.90309,-8.79252	1/1:7:0,6,0:0:0:6,0:205,0:-18.5473,-1.80618,0,-18.5473,-1.80618,-18.5473	1/1:8:0,8,0:0:0:8,0:267,0:-24.3558,-2.40824,0,-24.3558,-2.40824,-24.3558	1/2:264:0,135,128:0:0:135,128:4669,4571:-752.071,-372.675,-332.036,-379.399,0,-340.867	1/2:47:0,18,29:0:0:18,29:610,1035:-134.187,-84.7332,-79.3147,-49.7992,0,-41.0693	1/1:66:0,66,0:0:0:66,0:2259,0:-203.574,-19.868,0,-203.574,-19.868,-203.574	1/1:1:0,1,0:0:0:1,0:25,0:-2.49986,-0.30103,0,-2.49986,-0.30103,-2.49986	1/1:59:0,57,1:0:0:57,1:1910,36:-171.814,-17.1587,0,-168.876,-14.2213,-168.575	1/1:37:0,37,0:0:0:37,0:1249,0:-112.706,-11.1381,0,-112.706,-11.1381,-112.706	1/1:58:0,58,0:0:0:58,0:1943,0:-175.107,-17.4597,0,-175.107,-17.4597,-175.107	1/1:81:0,81,0:0:0:81,0:2783,0:-250.488,-24.3834,0,-250.488,-24.3834,-250.488	1/1:56:0,56,0:0:0:56,0:1927,0:-173.706,-16.8577,0,-173.706,-16.8577,-173.706	1/2:72:1,24,47:1:36:24,47:817,1680:-200.01,-134.041,-129.754,-63.3187,0,-52.1085	1/2:77:0,36,40:0:0:36,40:1250,1432:-218.497,-116.884,-106.047,-101.711,0,-89.6702	1/1:93:0,93,0:0:0:93,0:3095,0:-278.784,-27.9958,0,-278.784,-27.9958,-278.784	1/1:51:0,51,0:0:0:51,0:1763,0:-158.953,-15.3525,0,-158.953,-15.3525,-158.953	1/2:45:0,16,29:0:0:16,29:546,1035:-129.033,-84.7332,-79.9167,-44.6463,0,-35.9164	1/1:21:0,21,0:0:0:21,0:725,0:-65.5697,-6.32163,0,-65.5697,-6.32163,-65.5697	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/1:64:0,64,0:0:0:64,0:2115,0:-190.618,-19.2659,0,-190.618,-19.2659,-190.618	1/1:26:0,26,0:0:0:26,0:874,0:-78.9686,-7.82678,0,-78.9686,-7.82678,-78.9686	1/2:6:0,1,5:0:0:1,5:30,176:-17.0698,-14.6799,-14.3788,-2.69854,0,-1.19339	1/2:90:0,49,38:0:0:49,38:1694,1340:-246.672,-109.155,-94.4043,-137.562,0,-126.123	1/2:23:0,4,19:0:0:4,19:139,680:-67.1085,-55.8096,-54.6055,-11.6481,0,-5.92852	1/2:4:0,1,2:0:0:1,2:31,72:-8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chr11	21899284	.	C	G	26991.4	PASS	AB=0.511173;ABP=6.50407;AC=41;AF=0.22043;AN=186;AO=1660;CIGAR=1X;DP=7106;DPB=7106;DPRA=1.28244;EPP=3607.65;EPPR=11809.3;GTI=1;LEN=1;MEANALT=1.08696;MQM=59.962;MQMR=59.9844;NS=93;NUMALT=1;ODDS=1.32861;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58271;QR=192812;RO=5441;RPL=0;RPP=3607.65;RPPR=11818;RPR=1660;RUN=1;SAF=0;SAP=3607.65;SAR=1660;SRF=1;SRP=11809.3;SRR=5440;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:62:31,31:31:1097:31:1103:-80.9159,0,-80.3742	0/0:112:112,0:112:3979:0:0:0,-33.7154,-358.303	0/1:243:85,158:85:2988:158:5531:-424.775,0,-196.003	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:82:82,0:82:2866:0:0:0,-24.6845,-258.178	0/0:102:102,0:102:3628:0:0:0,-30.7051,-326.727	0/1:33:14,19:14:459:19:662:-49.9684,0,-31.689	0/0:75:75,0:75:2647:0:0:0,-22.5772,-238.478	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/1:73:31,42:31:1096:42:1467:-110.336,0,-76.9747	0/1:60:26,34:26:913:34:1204:-90.604,0,-64.4222	0/0:97:97,0:97:3424:0:0:0,-29.1999,-308.375	0/1:71:37,34:37:1315:34:1185:-85.5796,0,-97.2779	0/0:62:62,0:62:2207:0:0:0,-18.6639,-198.736	0/0:51:51,0:51:1794:0:0:0,-15.3525,-161.741	0/1:31:16,15:16:568:15:536:-39.2429,0,-42.1199	0/1:25:9,16:9:324:16:557:-42.9298,0,-21.9801	0/1:106:52,54:52:1840:54:1903:-139.637,0,-133.968	0/0:107:107,0:107:3789:0:0:0,-32.2102,-341.21	0/1:40:11,29:11:396:29:1036:-81.5127,0,-23.9415	0/1:55:31,24:31:1095:24:852:-60.4437,0,-82.3024	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:250:122,127:122:4307:127:4480:-328.058,0,-312.491	0/0:151:151,0:151:5354:0:0:0,-45.4555,-481.995	0/0:22:22,0:22:770:0:0:0,-6.62266,-69.6193	0/0:277:277,0:277:9842:0:0:0,-83.3853,-885.729	0/1:94:54,40:54:1935:40:1420:-99.8006,0,-146.129	0/0:80:80,0:80:2817:0:0:0,-24.0824,-253.77	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/0:13:13,0:13:445:0:0:0,-3.91339,-40.3754	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:150:76,74:76:2658:74:2595:-188.647,0,-194.308	0/1:82:30,52:30:1076:52:1831:-140.386,0,-72.4684	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.94	.:.:.:.:.:.:.:.	0/0:125:125,0:125:4419:0:0:0,-37.6287,-397.885	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:49:49,0:49:1711:0:0:0,-14.7505,-154.272	0/0:48:48,0:48:1695:0:0:0,-14.4494,-152.835	0/1:47:26,21:26:928:21:732:-52.0236,0,-69.6898	0/1:66:35,30:35:1213:30:1064:-76.1837,0,-89.5807	0/0:173:172,1:172:6077:1:36:0,-48.4799,-543.439	0/0:64:64,0:64:2254:0:0:0,-19.2659,-203.123	0/1:129:67,62:67:2384:62:2195:-158.983,0,-175.983	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.747	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	0/0:98:98,0:98:3465:0:0:0,-29.5009,-312.064	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:153:78,75:78:2771:75:2590:-187.29,0,-203.539	0/1:19:9,10:9:324:10:335:-24.7549,0,-23.7863	0/1:17:8,9:8:288:9:320:-24.0248,0,-21.1499	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/0:66:66,0:66:2337:0:0:0,-19.868,-210.589	0/1:120:69,50:69:2455:50:1732:-119.98,0,-185.022	0/1:5:4,1:4:135:1:36:-2.09312,0,-10.9774	0/1:173:104,69:104:3702:69:2443:-168.047,0,-280.815	0/0:157:153,4:153:5468:4:144:0,-33.9481,-478.935	0/1:104:62,41:62:2183:41:1464:-100.69,0,-165.368	0/0:99:99,0:99:3500:0:0:0,-29.802,-315.203	0/1:94:49,45:49:1725:45:1545:-111.041,0,-127.236	0/0:148:147,1:147:5209:1:36:0,-40.9542,-465.352	0/1:59:32,27:32:1127:27:955:-68.5025,0,-83.9767	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:54:53,1:53:1887:1:36:0,-12.6573,-166.509	0/1:20:6,14:6:216:14:484:-37.8679,0,-13.7699	0/0:106:105,1:105:3706:1:36:0,-28.3109,-330.147	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.682	0/0:129:128,0:128:4520:0:0:0,-38.5318,-406.612	0/1:177:66,111:66:2331:111:3883:-296.258,0,-156.765	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:109:64,45:64:2275:45:1577:-109.406,0,-172.2	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/1:92:42,50:42:1487:50:1753:-130.357,0,-106.429	0/0:104:104,0:104:3712:0:0:0,-31.3071,-334.283	0/0:127:127,0:127:4521:0:0:0,-38.2308,-407.058	0/1:45:20,25:20:716:25:887:-66.6018,0,-51.2214	0/0:74:74,0:74:2605:0:0:0,-22.2762,-234.699	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:124:68,56:68:2394:56:1941:-137.636,0,-178.387	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/1:78:43,35:43:1540:35:1231:-87.6129,0,-115.413	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.133	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/1:138:66,72:66:2359:72:2528:-186.229,0,-171.026	0/1:43:12,31:12:428:31:1074:-84.0222,0,-25.9145	0/0:171:171,0:171:6097:0:0:0,-51.4761,-548.833	0/0:91:90,1:90:3178:1:36:0,-23.7955,-282.645
chr11	21899305	.	A	T	117159	PASS	AB=0.487641;ABP=7.35788;AC=145;AF=0.77957;AN=186;AO=5549;CIGAR=1X;DP=7246;DPB=7246;DPRA=19.6793;EPP=12035.1;EPPR=3679.31;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.974;MQMR=59.9374;NS=93;NUMALT=1;ODDS=1.28072;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=197435;QR=60250;RO=1693;RPL=1;RPP=12043.8;RPPR=3679.31;RPR=5548;RUN=1;SAF=1;SAP=12043.8;SAR=5548;SRF=0;SRP=3679.31;SRR=1693;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:63:33,30:33:1180:30:1076:-78.188,0,-86.8917	1/1:114:0,114:0:0:114:4038:-363.608,-34.3174,0	0/1:250:160,90:160:5663:90:3197:-212.695,0,-434.497	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:83:0,82:0:0:82:2909:-261.685,-24.6845,0	1/1:103:0,103:0:0:103:3642:-327.984,-31.0061,0	0/1:30:17,13:17:608:13:468:-33.4287,0,-46.0211	1/1:75:0,75:0:0:75:2684:-241.804,-22.5773,0	1/1:54:0,54:0:0:54:1927:-173.706,-16.2556,0	0/1:78:45,33:45:1583:33:1172:-82.3072,0,-119.21	0/1:63:35,28:35:1247:28:975:-69.0802,0,-93.5692	1/1:104:0,104:0:0:104:3683:-331.672,-31.3071,0	0/1:72:34,38:34:1207:38:1348:-99.9455,0,-87.2611	1/1:61:0,61:0:0:61:2158:-194.486,-18.3628,0	1/1:52:0,52:0:0:52:1820:-164.078,-15.6536,0	0/1:31:16,15:16:568:15:536:-39.2429,0,-42.1199	0/1:24:16,8:16:576:8:273:-17.6755,0,-44.9503	0/1:110:56,54:56:2004:54:1922:-140.142,0,-147.52	1/1:111:0,110:0:0:110:3904:-351.195,-33.1133,0	0/1:42:29,13:29:1035:13:459:-29.0008,0,-80.8198	0/1:55:24,31:24:864:31:1087:-81.5743,0,-61.5259	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:252:129,123:129:4615:123:4408:-321.032,0,-339.654	1/1:155:1,154:1:36:154:5496:-491.171,-43.0614,0	1/1:22:0,22:0:0:22:769:-69.5295,-6.62266,0	1/1:277:0,277:0:0:277:9833:-884.922,-83.3853,0	0/1:97:40,57:40:1427:57:2029:-153.681,0,-99.5269	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:4:0,4:0:0:4:139:-12.8522,-1.20412,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:153:76,77:76:2711:77:2725:-199.435,0,-198.176	0/1:88:55,33:55:1959:33:1171:-79.206,0,-150.094	1/1:63:0,63:0:0:63:2238:-201.683,-18.9649,0	.:.:.:.:.:.:.:.	1/1:124:0,124:0:0:124:4414:-397.434,-37.3277,0	1/1:32:0,32:0:0:32:1134:-102.367,-9.63296,0	1/1:61:0,61:0:0:61:2192:-196.768,-18.3628,0	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	1/1:49:0,49:0:0:49:1723:-155.354,-14.7505,0	0/1:47:20,27:20:712:27:968:-73.289,0,-50.2582	0/1:67:30,37:30:1071:37:1324:-99.2931,0,-76.5326	1/1:173:1,172:1:36:172:6151:-550.089,-48.4799,0	1/1:66:0,66:0:0:66:2333:-210.229,-19.868,0	0/1:130:63,67:63:2239:67:2387:-175.953,0,-162.64	1/1:77:0,77:0:0:77:2702:-243.425,-23.1793,0	0/1:19:9,10:9:315:10:356:-26.6617,0,-22.9677	1/1:100:0,100:0:0:100:3543:-319.08,-30.103,0	1/1:82:0,82:0:0:82:2909:-262.045,-24.6845,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:159:80,79:80:2795:79:2824:-206.521,0,-203.921	0/1:21:10,11:10:356:11:392:-29.2984,0,-26.0596	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:68:0,67:0:0:67:2374:-213.558,-20.169,0	0/1:121:53,68:53:1881:68:2415:-181.182,0,-133.142	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:175:69,106:69:2467:106:3771:-286.911,0,-169.603	1/1:156:4,152:4:144:152:5435:-475.966,-33.6471,0	0/1:104:40,64:40:1440:64:2273:-173.525,0,-98.5906	1/1:97:0,97:0:0:97:3434:-309.269,-29.1999,0	0/1:91:44,47:44:1576:47:1661:-122.383,0,-114.738	1/1:155:1,154:1:36:154:5470:-488.832,-43.0614,0	0/1:60:28,32:28:984:32:1129:-83.8554,0,-70.8073	1/1:31:0,31:0:0:31:1103:-99.5798,-9.33193,0	1/1:55:1,54:1:36:54:1895:-167.227,-12.9584,0	0/1:21:15,6:15:540:6:216:-13.4689,0,-42.6149	1/1:110:1,109:1:36:109:3875:-345.348,-29.515,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:136:0,136:0:0:136:4861:-437.643,-40.9401,0	0/1:178:112,66:112:4002:66:2367:-159.705,0,-306.656	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:110:47,63:47:1692:63:2240:-168.749,0,-119.454	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:94:51,43:51:1801:43:1540:-110.596,0,-134.073	1/1:107:0,107:0:0:107:3840:-345.795,-32.2102,0	1/1:129:0,129:0:0:129:4616:-415.604,-38.8329,0	0/1:46:25,21:25:892:21:747:-53.7069,0,-66.7523	1/1:80:0,80:0:0:80:2849:-256.647,-24.0824,0	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:125:54,71:54:1919:71:2515:-188.974,0,-135.358	1/1:27:0,26:0:0:26:932:-83.8775,-7.82678,0	0/1:79:35,44:35:1251:44:1576:-118.35,0,-89.1129	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	0/1:138:75,63:75:2643:63:2224:-158.881,0,-196.571	0/1:45:33,12:33:1167:12:424:-24.9501,0,-91.7901	1/1:172:0,172:0:0:172:6136:-552.316,-51.7772,0	1/1:95:1,94:1:36:94:3359:-298.928,-24.9996,0
chr11	21899319	.	C	G	28946.2	PASS	AB=0.507893;ABP=4.79283;AC=41;AF=0.218085;AN=188;AO=1686;CIGAR=1X;DP=7281;DPB=7281;DPRA=1.31163;EPP=3517.94;EPPR=11749.6;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.9247;MQMR=59.9757;NS=94;NUMALT=1;ODDS=0.179492;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60043;QR=199841;RO=5592;RPL=1669;RPP=3517.94;RPPR=11758.2;RPR=17;RUN=1;SAF=0;SAP=3664.11;SAR=1686;SRF=1;SRP=12137.2;SRR=5591;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:63:30,33:30:1080:33:1154:-85.1473,0,-78.5484	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536	0/1:252:93,159:93:3340:159:5651:-432.848,0,-224.956	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:106:106,0:106:3770:0:0:0,-31.9092,-339.498	0/1:32:13,19:13:460:19:680:-51.8962,0,-32.1024	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:76:33,43:33:1184:43:1514:-113.666,0,-83.99	0/1:64:27,37:27:972:37:1303:-98.3033,0,-68.532	0/0:99:99,0:99:3515:0:0:0,-29.802,-316.557	0/1:72:38,34:38:1353:34:1208:-87.3519,0,-100.394	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:52:52,0:52:1851:0:0:0,-15.6536,-166.869	0/1:31:15,16:15:536:16:556:-41.0334,0,-39.2429	0/1:25:10,15:10:356:15:531:-40.5962,0,-24.8555	0/1:109:54,55:54:1929:55:1961:-143.952,0,-141.072	0/0:112:112,0:112:4002:0:0:0,-33.7154,-360.369	0/1:40:12,28:12:428:28:1000:-78.2742,0,-26.8176	0/1:57:32,25:32:1148:25:881:-62.448,0,-86.3848	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:252:124,127:124:4440:127:4539:-332.759,0,-323.853	0/0:152:152,0:152:5436:0:0:0,-45.7566,-489.367	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/0:282:282,0:282:10089:0:0:0,-84.8905,-907.942	0/1:99:58,41:58:2072:41:1457:-101.623,0,-156.949	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:153:77,76:77:2740:76:2730:-199.885,0,-200.783	0/1:89:34,55:34:1216:55:1959:-149.793,0,-82.9549	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.782	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:126:126,0:126:4501:0:0:0,-37.9298,-405.258	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:63:63,0:63:2237:0:0:0,-18.9649,-201.101	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:48:27,21:27:968:21:732:-51.7042,0,-72.9879	0/1:68:37,31:37:1328:31:1100:-78.8402,0,-99.3522	0/0:179:178,1:178:6376:1:36:0,-50.2861,-570.33	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/1:131:69,62:69:2472:62:2220:-160.63,0,-183.299	0/0:78:78,0:78:2768:0:0:0,-23.4803,-249.36	0/1:19:10,9:10:360:9:304:-21.9669,0,-27.0247	0/0:101:101,0:101:3597:0:0:0,-30.404,-323.936	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:159:76,83:76:2721:83:2952:-218.049,0,-197.266	0/1:21:11,10:11:396:10:360:-26.4227,0,-29.6611	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/1:120:68,52:68:2448:52:1864:-131.916,0,-184.451	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:180:111,69:111:3953:69:2480:-169.268,0,-301.286	0/0:160:156,4:156:5583:4:136:0,-35.5893,-490.017	0/1:107:66,41:66:2360:41:1452:-98.7657,0,-180.448	0/0:97:97,0:97:3469:0:0:0,-29.1999,-312.398	0/1:92:48,44:48:1719:44:1576:-114.437,0,-127.3	0/0:157:156,1:156:5546:1:36:0,-43.6634,-495.667	0/1:60:31,28:31:1116:28:998:-72.014,0,-82.6311	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:56:55,1:55:1953:1:36:0,-13.2594,-172.446	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/0:111:110,1:110:3956:1:36:0,-29.8161,-352.631	0/0:76:76,0:76:2706:0:0:0,-22.8783,-243.781	0/0:133:133,0:133:4741:0:0:0,-40.037,-426.849	0/1:180:69,111:69:2427:111:3941:-300.691,0,-164.496	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:113:65,48:65:2336:48:1724:-121.429,0,-176.483	0/1:12:6,6:6:207:6:216:-16.1782,0,-15.3545	0/1:93:43,50:43:1525:50:1792:-133.567,0,-109.545	0/0:104:104,0:104:3725:0:0:0,-31.3071,-335.449	0/0:127:127,0:127:4520:0:0:0,-38.2308,-406.968	0/1:46:21,25:21:756:25:900:-67.4736,0,-54.5198	0/0:80:79,0:79:2807:0:0:0,-23.7814,-252.511	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/1:128:72,56:72:2584:56:1989:-140.751,0,-194.277	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:77:44,33:44:1580:33:1171:-82.5174,0,-119.312	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:136:65,71:65:2328:71:2548:-188.63,0,-168.84	0/1:43:12,31:12:432:31:1100:-86.366,0,-26.2769	0/0:174:174,0:174:6191:0:0:0,-52.3792,-557.16	0/0:94:93,1:93:3305:1:36:0,-24.6985,-294.071
chr11	21899474	.	ATG	GTG,GTC	210714	PASS	AB=0.509712,0.478232;ABP=6.67984,21.4453;AC=148,40;AF=0.787234,0.212766;AN=188;AO=8020,2154;CIGAR=1X2M,1X1M1X;DP=10273;DPB=10273;DPRA=0,1.13456;EPP=17383.5,4645.68;EPPR=13.8677;GTI=1;LEN=1,3;MEANALT=2.25532,2.97778;MQM=59.9162,59.8213;MQMR=60;NS=94;NUMALT=2;ODDS=1.76144;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=282879,68604;QR=178;RO=5;RPL=3,3;RPP=17392.2,4654.34;RPPR=13.8677;RPR=8017,2151;RUN=1,1;SAF=1,1;SAP=17409.5,4671.68;SAR=8019,2153;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/2:201:0,111,87:0:0:111,87:3913,2789:-543.423,-224.806,-191.392,-318.691,0,-292.501	1/1:173:1,171,0:1:36:171,0:6079,0:-543.669,-48.4838,0,-543.97,-51.4761,-546.908	1/2:317:0,184,131:0:0:184,131:6462,4267:-870.46,-344.513,-289.123,-526.018,0,-486.583	1/1:71:0,68,3:0:0:68,3:2427,91:-218.362,-20.47,0,-211.079,-12.8815,-210.176	1/1:70:0,68,0:0:0:68,0:2410,0:-216.872,-20.47,0,-216.872,-20.47,-216.872	1/1:116:0,115,1:0:0:115,1:4086,36:-367.339,-34.6185,0,-364.401,-31.3212,-364.1	1/1:167:0,164,2:0:0:164,2:5780,64:-519.765,-49.3689,0,-514.609,-44.1328,-514.007	1/2:99:0,47,49:0:0:47,49:1671,1532:-259.107,-123.073,-108.924,-136.044,0,-121.293	1/1:134:0,132,0:0:0:132,0:4689,0:-421.943,-39.736,0,-421.943,-39.736,-421.943	1/1:72:0,72,0:0:0:72,0:2496,0:-224.889,-21.6742,0,-224.889,-21.6742,-224.889	1/2:97:0,48,48:0:0:48,48:1702,1466:-256.22,-117.534,-103.085,-138.783,0,-124.333	1/2:62:0,32,30:0:0:32,30:1135,963:-170.422,-77.934,-68.301,-92.8251,0,-83.7942	1/1:75:0,75,0:0:0:75,0:2649,0:-238.654,-22.5773,0,-238.654,-22.5773,-238.654	1/2:59:0,28,31:0:0:28,31:986,992:-160.529,-80.2425,-71.8136,-80.6233,0,-71.2914	1/1:75:0,75,0:0:0:75,0:2648,0:-238.564,-22.5773,0,-238.564,-22.5773,-238.564	1/1:74:0,74,0:0:0:74,0:2617,0:-235.775,-22.2762,0,-235.775,-22.2762,-235.775	1/2:49:0,26,22:0:0:26,22:923,716:-133.067,-57.8449,-50.0181,-75.2812,0,-68.6585	1/2:50:0,25,25:0:0:25,25:887,770:-134.355,-62.0642,-54.5385,-72.6224,0,-65.0966	1/2:228:0,114,114:0:0:114,114:4003,3540:-610.175,-284.378,-250.061,-326.128,0,-291.811	1/1:152:0,152,0:0:0:152,0:5384,0:-484.692,-45.7566,0,-484.692,-45.7566,-484.692	1/2:117:0,32,83:0:0:32,83:1136,2670:-307.799,-215.23,-205.597,-92.6256,0,-67.6401	1/2:71:0,31,39:0:0:31,39:1090,1146:-180.211,-91.46,-82.128,-88.8616,0,-77.1214	1/1:115:0,113,0:0:0:113,0:3975,0:-357.475,-34.0164,0,-357.475,-34.0164,-357.475	1/1:56:0,55,0:0:0:55,0:1935,0:-174.171,-16.5567,0,-174.171,-16.5567,-174.171	1/2:289:0,149,135:0:0:149,135:5202,4342:-772.933,-350.071,-305.217,-422.933,0,-382.294	1/1:215:0,215,0:0:0:215,0:7591,0:-683.227,-64.7215,0,-683.227,-64.7215,-683.227	1/1:38:0,38,0:0:0:38,0:1347,0:-121.528,-11.4391,0,-121.528,-11.4391,-121.528	1/1:304:0,299,0:0:0:299,0:10523,0:-946.737,-90.008,0,-946.737,-90.008,-946.737	1/2:157:0,90,66:0:0:90,66:3159,2108:-426.933,-169.825,-142.732,-257.16,0,-237.292	1/1:125:0,123,0:0:0:123,0:4352,0:-391.609,-37.0267,0,-391.609,-37.0267,-391.609	1/2:2:0,1,1:0:0:1,1:36,33:-5.95048,-2.9981,-2.69707,-3.29724,0,-2.99621	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:10:0,10,0:0:0:10,0:347,0:-31.5636,-3.0103,0,-31.5636,-3.0103,-31.5636	1/1:14:0,14,0:0:0:14,0:482,0:-43.7061,-4.21442,0,-43.7061,-4.21442,-43.7061	1/1:10:0,10,0:0:0:10,0:351,0:-31.9267,-3.0103,0,-31.9267,-3.0103,-31.9267	1/2:179:0,82,97:0:0:82,97:2863,3070:-480.223,-247.337,-222.652,-233.22,0,-204.02	1/2:148:0,67,80:0:0:67,80:2400,2640:-409.222,-213.479,-193.31,-195.807,0,-171.724	1/1:75:0,75,0:0:0:75,0:2613,0:-235.415,-22.5773,0,-235.415,-22.5773,-235.415	1/1:8:0,8,0:0:0:8,0:280,0:-25.5393,-2.40824,0,-25.5393,-2.40824,-25.5393	1/1:178:0,178,0:0:0:178,0:6273,0:-564.668,-53.5833,0,-564.668,-53.5833,-564.668	1/1:48:0,47,0:0:0:47,0:1649,0:-148.441,-14.1484,0,-148.441,-14.1484,-148.441	1/1:168:0,167,0:0:0:167,0:5916,0:-532.193,-50.272,0,-532.193,-50.272,-532.193	1/1:87:0,86,0:0:0:86,0:3035,0:-273.127,-25.8886,0,-273.127,-25.8886,-273.127	1/1:85:0,83,0:0:0:83,0:2891,0:-260.121,-24.9855,0,-260.121,-24.9855,-260.121	1/2:97:0,45,51:0:0:45,51:1577,1708:-266.724,-138.395,-124.848,-128.419,0,-113.066	1/2:148:0,76,70:0:0:76,70:2697,2169:-393.883,-174.117,-151.239,-219.825,0,-198.753	1/1:255:0,251,0:0:0:251,0:8835,0:-794.873,-75.5585,0,-794.873,-75.5585,-794.873	1/1:125:0,124,0:0:0:124,0:4377,0:-393.867,-37.3277,0,-393.867,-37.3277,-393.867	1/2:218:2,113,99:2:72:113,99:4002,3203:-577.946,-252.531,-224.39,-320.185,0,-296.258	1/1:129:0,129,0:0:0:129,0:4557,0:-410.279,-38.8329,0,-410.279,-38.8329,-410.279	1/2:9:0,5,4:0:0:5,4:176,117:-23.9777,-9.61667,-8.11152,-14.6799,0,-13.4757	1/1:168:0,166,0:0:0:166,0:5877,0:-528.779,-49.971,0,-528.779,-49.971,-528.779	1/1:38:0,38,0:0:0:38,0:1360,0:-122.701,-11.4391,0,-122.701,-11.4391,-122.701	1/2:12:0,6,6:0:0:6,6:216,181:-32.4356,-14.782,-12.9758,-17.9843,0,-16.1782	1/2:165:0,89,75:0:0:89,75:3143,2362:-445.939,-189.977,-163.185,-256.014,0,-233.437	1/2:52:0,33,18:0:0:33,18:1159,5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chr11	22075366	.	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chr11	22814600	.	G	A	24361.7	PASS	AB=0.590946;ABP=182.327;AC=40;AF=0.215054;AN=186;AO=1478;CIGAR=1X;DP=5248;DPB=5248;DPRA=1.24815;EPP=3212.45;EPPR=8137.43;GTI=8;LEN=1;MEANALT=1;MQM=41.6448;MQMR=27.0798;NS=93;NUMALT=1;ODDS=0.224865;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52859;QR=134770;RO=3770;RPL=0;RPP=3212.45;RPPR=8146.09;RPR=1478;RUN=1;SAF=1478;SAP=3212.45;SAR=0;SRF=3769;SRP=8180.78;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1180:0:0:0,-9.93399,-78.5607	0/1:57:25,32:25:887:32:1148:-81.5101,0,-43.2717	0/0:50:50,0:50:1792:0:0:0,-15.0515,-119.134	0/1:105:40,65:40:1405:65:2332:-171.47,0,-60.8828	0/0:37:37,0:37:1328:0:0:0,-11.1381,-86.43	0/0:18:18,0:18:648:0:0:0,-5.41854,-44.8921	0/0:64:64,0:64:2283:0:0:0,-19.2659,-148.767	0/0:63:63,0:63:2252:0:0:0,-18.9649,-151.052	0/1:78:34,44:34:1224:44:1572:-110.705,0,-57.5036	0/0:45:45,0:45:1593:0:0:0,-13.5463,-103.212	0/0:38:38,0:38:1364:0:0:0,-11.4391,-87.7133	0/1:65:26,39:26:932:39:1381:-97.4524,0,-43.4723	0/1:57:23,34:23:815:34:1216:-85.7868,0,-36.3717	0/0:42:42,0:42:1500:0:0:0,-12.6433,-97.4523	0/1:58:31,27:31:1112:27:964:-66.191,0,-53.8229	0/0:41:41,0:41:1468:0:0:0,-12.3422,-94.7672	0/0:47:47,0:47:1676:0:0:0,-14.1484,-114.164	0/1:33:9,24:9:316:24:860:-63.8712,0,-12.5264	0/1:27:12,15:12:432:15:536:-38.0379,0,-20.7419	0/1:78:32,46:32:1128:46:1652:-121.64,0,-50.9355	0/0:84:84,0:84:2994:0:0:0,-25.2865,-193.485	0/1:73:13,60:13:460:60:2152:-168.875,0,-10.164	0/1:47:18,29:18:648:29:1044:-77.5775,0,-29.4413	0/0:69:69,0:69:2476:0:0:0,-20.7711,-162.186	0/0:45:45,0:45:1604:0:0:0,-13.5463,-105.57	0/1:140:53,87:53:1896:87:3119:-233.923,0,-86.8742	0/0:124:124,0:124:4439:0:0:0,-37.3277,-288.452	0/0:29:29,0:29:1036:0:0:0,-8.72987,-67.8864	0/0:110:110,0:110:3935:0:0:0,-33.1133,-270.469	0/1:66:23,43:23:824:43:1540:-113.754,0,-32.88	0/0:73:73,0:73:2620:0:0:0,-21.9752,-168.343	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:12:12,0:12:428:0:0:0,-3.61236,-29.7278	0/0:2:2,0:2:72:0:0:0,-0.60206,-5.03234	0/0:9:9,0:9:324:0:0:0,-2.70927,-21.7185	0/0:4:4,0:4:144:0:0:0,-1.20412,-9.79982	0/1:184:85,99:85:3047:99:3552:-257.991,0,-153.107	0/1:96:31,65:31:1112:65:2317:-170.739,0,-43.7147	0/0:44:44,0:44:1563:0:0:0,-13.2453,-105.27	.:.:.:.:.:.:.:.	0/0:59:59,0:59:2112:0:0:0,-17.7608,-137.355	0/0:27:27,0:27:968:0:0:0,-8.12781,-63.0926	0/0:87:87,0:87:3098:0:0:0,-26.1896,-199.598	0/0:47:47,0:47:1664:0:0:0,-14.1484,-107.97	0/0:56:56,0:56:2008:0:0:0,-16.8577,-129.548	0/1:60:26,34:26:932:34:1220:-90.0989,0,-46.0048	0/1:68:31,37:31:1108:37:1320:-90.9334,0,-53.5684	0/0:68:68,0:68:2444:0:0:0,-20.47,-156.293	0/0:57:57,0:57:2029:0:0:0,-17.1587,-132.77	0/1:39:23,16:23:815:16:568:-37.7531,0,-41.2386	0/0:81:81,0:81:2875:0:0:0,-24.3834,-196.612	0/1:3:2,1:2:72:1:36:-2.61792,0,-3.95845	0/0:57:56,1:56:2012:1:36:0,-13.7351,-130.962	0/0:26:26,0:26:932:0:0:0,-7.82678,-64.227	0/1:10:5,5:5:180:5:180:-12.667,0,-9.17326	0/1:81:38,43:38:1352:43:1517:-108.003,0,-64.3497	0/1:48:25,23:25:888:23:828:-58.2274,0,-43.226	0/1:5:2,3:2:72:3:108:-8.03414,0,-3.52501	0/0:8:8,0:8:288:0:0:0,-2.40824,-19.9743	0/0:42:42,0:42:1500:0:0:0,-12.6433,-96.7176	0/1:90:42,48:42:1508:48:1724:-124.34,0,-70.5122	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	0/1:110:38,72:38:1356:72:2569:-194.446,0,-60.1972	0/0:103:103,0:103:3665:0:0:0,-31.0061,-239.944	0/1:42:6,36:6:216:36:1292:-99.7484,0,-1.59443	0/0:30:30,0:30:1072:0:0:0,-9.0309,-70.469	0/1:101:30,71:30:1076:71:2548:-192.649,0,-40.5958	0/0:49:48,1:48:1709:1:36:0,-11.2295,-106.361	0/1:23:11,12:11:396:12:432:-31.0159,0,-18.6634	0/0:35:35,0:35:1243:0:0:0,-10.536,-83.9068	0/0:35:35,0:35:1248:0:0:0,-10.536,-86.2431	0/1:12:6,6:6:216:6:216:-15.7162,0,-10.4605	0/0:95:95,0:95:3394:0:0:0,-28.5978,-231.841	0/0:37:37,0:37:1324:0:0:0,-11.1381,-88.341	0/0:102:102,0:102:3660:0:0:0,-30.7051,-235.235	0/1:83:47,36:47:1688:36:1284:-86.9294,0,-84.3911	0/0:51:51,0:51:1823:0:0:0,-15.3525,-121.606	0/1:56:18,38:18:640:38:1345:-97.8753,0,-26.0473	0/1:16:6,10:6:216:10:352:-25.7876,0,-9.75082	0/1:48:26,22:26:936:22:788:-54.5159,0,-47.4764	0/0:36:36,0:36:1288:0:0:0,-10.8371,-85.9572	0/0:136:136,0:136:4868:0:0:0,-40.9401,-312.435	0/1:84:34,50:34:1220:50:1768:-128.244,0,-54.154	0/0:43:43,0:43:1540:0:0:0,-12.9443,-99.2582	0/0:49:49,0:49:1764:0:0:0,-14.7505,-112.422	0/1:160:77,83:77:2747:83:2967:-209.791,0,-130.663	0/0:28:28,0:28:1004:0:0:0,-8.42884,-66.9484	0/1:54:31,23:31:1116:23:824:-53.2827,0,-58.3425	0/0:65:65,0:65:2328:0:0:0,-19.5669,-156.737	0/0:15:15,0:15:536:0:0:0,-4.51545,-34.9108	0/1:74:28,46:28:999:46:1656:-121.207,0,-42.0093	0/1:65:14,51:14:500:51:1824:-139.859,0,-13.8918	0/0:63:63,0:63:2264:0:0:0,-18.9649,-144.95	0/0:80:80,0:80:2868:0:0:0,-24.0824,-184.587
chr11	22814603	.	TAAG	TAC,TAAC	83930	PASS	AB=0.410813,0.586819;ABP=178.085,168.913;AC=146,40;AF=0.784946,0.215054;AN=186;AO=3852,1490;CIGAR=1M1D1M1X,3M1X;DP=5352;DPB=4388.25;DPRA=58.163,1.23739;EPP=7620.63,3221.16;EPPR=0;GTI=5;LEN=3,1;MEANALT=1.54348,2.12195;MQM=27.1729,41.7148;MQMR=0;NS=93;NUMALT=2;ODDS=0.648646;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=136717,53395;QR=0;RO=0;RPL=87,2;RPP=7628.92,3221.16;RPPR=0;RPR=3765,1488;RUN=1,1;SAF=3851,1490;SAP=8358.84,3238.5;SAR=1,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33,0:0:0:33,0:1167,0:-78.1465,-9.93399,0,-78.1465,-9.93399,-78.1465	1/2:57:0,25,32:0:0:25,32:882,1148:-141.537,-89.0359,-81.5101,-52.8009,0,-43.1679	1/1:50:0,50,0:0:0:50,0:1787,0:-119.205,-15.0515,0,-119.205,-15.0515,-119.205	1/2:105:0,39,65:0:0:39,65:1402,2340:-262.648,-184.375,-172.635,-78.2662,0,-58.6993	1/1:37:0,37,0:0:0:37,0:1314,0:-86.1519,-11.1381,0,-86.1519,-11.1381,-86.1519	1/1:18:0,18,0:0:0:18,0:635,0:-43.8726,-5.41854,0,-43.8726,-5.41854,-43.8726	1/1:67:0,67,0:0:0:67,0:2369,0:-154.444,-20.169,0,-154.444,-20.169,-154.444	1/1:67:0,67,0:0:0:67,0:2330,0:-158.707,-20.169,0,-158.707,-20.169,-158.707	1/2:78:0,34,44:0:0:34,44:1220,1571:-191.213,-120.81,-110.575,-70.6993,0,-57.454	1/1:45:0,45,0:0:0:45,0:1601,0:-103.599,-13.5464,0,-103.599,-13.5464,-103.599	1/1:40:0,40,0:0:0:40,0:1413,0:-91.7796,-12.0412,0,-91.7796,-12.0412,-91.7796	1/2:67:0,28,39:0:0:28,39:1008,1396:-164.798,-105.655,-97.2261,-59.4388,0,-47.6987	1/2:57:0,23,34:0:0:23,34:812,1224:-139.052,-93.2569,-86.3332,-46.0827,0,-35.8477	1/1:43:0,43,0:0:0:43,0:1535,0:-100.852,-12.9443,0,-100.852,-12.9443,-100.852	1/2:58:0,31,27:0:0:31,27:1116,972:-137.833,-76.1631,-66.8312,-61.9726,0,-53.8448	1/1:42:0,41,0:0:0:41,0:1476,0:-95.8598,-12.3422,0,-95.8598,-12.3422,-95.8598	1/1:47:0,47,0:0:0:47,0:1664,0:-113.732,-14.1484,0,-113.732,-14.1484,-113.732	1/2:36:0,10,26:0:0:10,26:354,936:-93.8482,-72.4146,-69.4043,-21.7248,0,-13.898	1/2:27:0,12,15:0:0:12,15:432,540:-66.7904,-41.8316,-38.2192,-25.2574,0,-20.7419	1/2:79:0,32,47:0:0:32,47:1097,1688:-198.095,-134.629,-124.996,-63.7599,0,-49.6115	1/1:86:0,86,0:0:0:86,0:3058,0:-197.732,-25.8886,0,-197.732,-25.8886,-197.732	1/2:75:0,13,62:0:0:13,62:468,2224:-206.636,-178.549,-174.636,-28.3738,0,-9.70994	1/2:50:0,17,33:0:0:17,33:607,1184:-128.563,-93.6965,-88.579,-35.1578,0,-25.2239	1/1:72:0,72,0:0:0:72,0:2553,0:-167.727,-21.6742,0,-167.727,-21.6742,-167.727	1/1:46:0,46,0:0:0:46,0:1604,0:-106.691,-13.8474,0,-106.691,-13.8474,-106.691	1/2:143:0,55,88:0:0:55,88:1939,3147:-369.209,-252.187,-235.631,-117.323,0,-90.8324	1/1:126:0,126,0:0:0:126,0:4499,0:-293.569,-37.9298,0,-293.569,-37.9298,-293.569	1/1:29:0,29,0:0:0:29,0:1031,0:-67.5777,-8.72987,0,-67.5777,-8.72987,-67.5777	1/1:111:0,111,0:0:0:111,0:3916,0:-270.901,-33.4143,0,-270.901,-33.4143,-270.901	1/2:65:0,23,41:0:0:23,41:815,1476:-160.913,-115.484,-108.56,-45.4049,0,-33.0626	1/1:72:0,72,0:0:0:72,0:2536,0:-164.882,-21.6742,0,-164.882,-21.6742,-164.882	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:12:0,12,0:0:0:12,0:432,0:-29.7785,-3.61236,0,-29.7785,-3.61236,-29.7785	1/1:2:0,2,0:0:0:2,0:72,0:-5.03234,-0.60206,0,-5.03234,-0.60206,-5.03234	1/1:10:0,10,0:0:0:10,0:339,0:-23.5653,-3.0103,0,-23.5653,-3.0103,-23.5653	1/1:4:0,4,0:0:0:4,0:142,0:-9.77441,-1.20412,0,-9.77441,-1.20412,-9.77441	1/2:186:0,85,101:0:0:85,101:3016,3628:-471.216,-289.526,-263.938,-181.998,0,-151.594	1/2:98:0,34,64:0:0:34,64:1178,2292:-245.565,-178.336,-168.101,-67.5127,0,-48.2468	1/1:44:0,44,0:0:0:44,0:1559,0:-105.096,-13.2453,0,-105.096,-13.2453,-105.096	.:.:.:.:.:.:.:.	1/1:61:0,60,0:0:0:60,0:2133,0:-138.483,-18.0618,0,-138.483,-18.0618,-138.483	1/1:28:0,28,0:0:0:28,0:993,0:-65.4333,-8.42884,0,-65.4333,-8.42884,-65.4333	1/1:88:0,88,0:0:0:88,0:3144,0:-202.132,-26.4906,0,-202.132,-26.4906,-202.132	1/1:50:0,50,0:0:0:50,0:1776,0:-115.653,-15.0515,0,-115.653,-15.0515,-115.653	1/1:63:0,63,0:0:0:63,0:2212,0:-145.601,-18.9649,0,-145.601,-18.9649,-145.601	1/2:62:0,27,35:0:0:27,35:972,1251:-158.548,-100.38,-92.2521,-58.4751,0,-47.9391	1/2:70:0,33,37:0:0:33,37:1165,1332:-169.224,-101.085,-91.1507,-68.4366,0,-57.2985	1/1:69:0,69,0:0:0:69,0:2454,0:-158.108,-20.7711,0,-158.108,-20.7711,-158.108	1/1:57:0,57,0:0:0:57,0:2027,0:-132.895,-17.1587,0,-132.895,-17.1587,-132.895	1/2:39:0,23,16:0:0:23,16:826,572:-90.9474,-44.9778,-38.0541,-46.2771,0,-41.4606	1/1:83:0,83,0:0:0:83,0:2960,0:-201.044,-24.9855,0,-201.044,-24.9855,-201.044	1/2:3:0,2,1:0:0:2,1:72,36:-7.15944,-3.21998,-2.61792,-4.25948,0,-3.95845	1/1:57:0,56,1:0:0:56,1:1984,36:-133.022,-16.8577,0,-130.241,-13.7351,-129.94	1/1:29:0,29,0:0:0:29,0:1027,0:-71.3126,-8.72987,0,-71.3126,-8.72987,-71.3126	1/2:10:0,5,5:0:0:5,5:178,180:-24.5227,-14.1722,-12.667,-10.6531,0,-9.14799	1/2:84:0,40,44:0:0:40,44:1428,1584:-205.79,-124.722,-112.681,-81.3692,0,-68.1239	1/2:48:0,25,23:0:0:25,23:882,828:-115.421,-65.7532,-58.2274,-49.972,0,-43.0484	1/2:6:0,3,3:0:0:3,3:108,108:-14.9246,-8.6362,-7.73311,-6.59261,0,-5.68952	1/1:8:0,8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chr11	22814636	.	CC	AT,CT	78882	PASS	AB=0.406375,0.592829;ABP=194.117,190.878;AC=144,40;AF=0.782609,0.217391;AN=184;AO=3775,1491;CIGAR=2X,1M1X;DP=5269;DPB=5269;DPRA=57.8901,1.22749;EPP=8191.64,3240.68;EPPR=5.18177;GTI=7;LEN=2,1;MEANALT=1.46154,2;MQM=26.435,41.6419;MQMR=58;NS=92;NUMALT=2;ODDS=0.308509;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=134019,53299;QR=36;RO=1;RPL=3769,1491;RPP=8148.29,3240.68;RPPR=5.18177;RPR=6,0;RUN=1,1;SAF=3768,1491;SAP=8139.63,3240.68;SAR=7,0;SRF=1;SRP=5.18177;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33,0:0:0:33,0:1153,0:-77.6345,-9.93399,0,-77.6345,-9.93399,-77.6345	1/2:56:0,24,32:0:0:24,32:840,1148:-138.313,-89.0359,-81.8112,-49.5731,0,-39.9402	1/1:49:0,49,0:0:0:49,0:1747,0:-115.915,-14.7505,0,-115.915,-14.7505,-115.915	1/2:102:0,39,63:0:0:39,63:1393,2251:-255.097,-177.402,-165.662,-77.9841,0,-59.0192	1/1:36:0,36,0:0:0:36,0:1264,0:-82.5014,-10.8371,0,-82.5014,-10.8371,-82.5014	1/1:16:0,16,0:0:0:16,0:574,0:-38.3798,-4.81648,0,-38.3798,-4.81648,-38.3798	1/1:67:0,67,0:0:0:67,0:2404,0:-155.016,-20.169,0,-155.016,-20.169,-155.016	1/1:65:0,65,0:0:0:65,0:2291,0:-153.928,-19.567,0,-153.928,-19.567,-153.928	1/2:77:0,34,43:0:0:34,43:1220,1531:-188.16,-117.756,-107.521,-70.6993,0,-57.755	1/1:46:0,46,0:0:0:46,0:1619,0:-105.423,-13.8474,0,-105.423,-13.8474,-105.423	1/1:40:0,40,0:0:0:40,0:1426,0:-92.2176,-12.0412,0,-92.2176,-12.0412,-92.2176	1/2:66:0,27,39:0:0:27,39:968,1379:-162.333,-106.178,-98.0506,-56.4484,0,-44.7082	1/2:58:0,23,35:0:0:23,35:821,1260:-142.387,-96.0373,-89.1136,-46.6387,0,-36.1026	1/1:41:0,41,0:0:0:41,0:1474,0:-94.6519,-12.3422,0,-94.6519,-12.3422,-94.6519	1/2:58:0,31,27:0:0:31,27:1114,968:-137.493,-75.843,-66.5111,-61.9524,0,-53.8246	1/1:40:0,40,0:0:0:40,0:1436,0:-91.8915,-12.0412,0,-91.8915,-12.0412,-91.8915	1/1:44:0,44,0:0:0:44,0:1554,0:-104.236,-13.2453,0,-104.236,-13.2453,-104.236	1/2:35:0,9,26:0:0:9,26:314,928:-90.3856,-71.8676,-69.1584,-18.8001,0,-10.9733	1/2:27:0,12,15:0:0:12,15:432,538:-66.7103,-41.7513,-38.1389,-25.2574,0,-20.7419	1/2:79:0,31,48:0:0:31,48:1082,1724:-198.592,-137.497,-128.165,-61.3862,0,-46.9368	1/1:86:0,86,0:0:0:86,0:3048,0:-197.628,-25.8886,0,-197.628,-25.8886,-197.628	1/2:74:0,13,61:0:0:13,61:468,2188:-203.743,-175.656,-171.743,-28.3738,0,-10.011	1/2:50:0,16,34:0:0:16,34:574,1212:-128.067,-96.0868,-91.2704,-32.2644,0,-22.0294	1/1:68:0,68,0:0:0:68,0:2428,0:-156.97,-20.47,0,-156.97,-20.47,-156.97	1/1:46:0,46,0:0:0:46,0:1611,0:-105.654,-13.8474,0,-105.654,-13.8474,-105.654	1/2:139:1,54,84:1:36:54,84:1897,3001:-350.265,-236.932,-223.613,-110.637,0,-88.2887	1/1:123:0,123,0:0:0:123,0:4383,0:-283.014,-37.0267,0,-283.014,-37.0267,-283.014	1/1:28:0,28,0:0:0:28,0:996,0:-64.4328,-8.42884,0,-64.4328,-8.42884,-64.4328	1/1:110:0,110,0:0:0:110,0:3905,0:-268.781,-33.1133,0,-268.781,-33.1133,-268.781	1/2:66:0,22,43:0:0:22,43:792,1539:-164.102,-120.429,-113.806,-43.7344,0,-30.7901	1/1:73:0,73,0:0:0:73,0:2578,0:-167.227,-21.9752,0,-167.227,-21.9752,-167.227	.:.:.:.:.:.:.:.	1/1:10:0,10,0:0:0:10,0:358,0:-23.2638,-3.0103,0,-23.2638,-3.0103,-23.2638	1/1:2:0,2,0:0:0:2,0:72,0:-5.03234,-0.60206,0,-5.03234,-0.60206,-5.03234	1/1:10:0,10,0:0:0:10,0:339,0:-23.5653,-3.0103,0,-23.5653,-3.0103,-23.5653	1/1:4:0,4,0:0:0:4,0:144,0:-9.79982,-1.20412,0,-9.79982,-1.20412,-9.79982	1/2:186:0,84,102:0:0:84,102:2995,3639:-469.74,-290.387,-265.101,-179.659,0,-148.954	1/2:97:0,33,64:0:0:33,64:1153,2288:-244.167,-178.839,-168.905,-65.6123,0,-46.3464	1/1:43:0,43,0:0:0:43,0:1533,0:-102.11,-12.9443,0,-102.11,-12.9443,-102.11	.:.:.:.:.:.:.:.	1/1:59:0,59,0:0:0:59,0:2089,0:-135.233,-17.7608,0,-135.233,-17.7608,-135.233	1/1:26:0,26,0:0:0:26,0:936,0:-60.2109,-7.82678,0,-60.2109,-7.82678,-60.2109	1/1:87:0,87,0:0:0:87,0:3082,0:-198.334,-26.1896,0,-198.334,-26.1896,-198.334	1/1:49:0,49,0:0:0:49,0:1725,0:-111.933,-14.7505,0,-111.933,-14.7505,-111.933	1/1:60:0,60,0:0:0:60,0:2113,0:-135.884,-18.0618,0,-135.884,-18.0618,-135.884	1/2:62:0,27,35:0:0:27,35:956,1252:-158.18,-100.485,-92.3567,-58.001,0,-47.465	1/2:69:0,33,36:0:0:33,36:1154,1288:-165.708,-97.8105,-87.8765,-68.1944,0,-57.3573	1/1:69:0,69,0:0:0:69,0:2452,0:-157.893,-20.7711,0,-157.893,-20.7711,-157.893	1/1:55:0,55,0:0:0:55,0:1970,0:-126.811,-16.5567,0,-126.811,-16.5567,-126.811	1/2:39:0,23,16:0:0:23,16:817,576:-90.9859,-45.2788,-38.3551,-46.0152,0,-41.1988	1/1:83:0,83,0:0:0:83,0:2944,0:-200.848,-24.9855,0,-200.848,-24.9855,-200.848	1/2:3:0,2,1:0:0:2,1:72,36:-7.15944,-3.21998,-2.61792,-4.25948,0,-3.95845	1/1:56:0,55,1:0:0:55,1:1953,36:-130.176,-16.5567,0,-127.394,-13.4341,-127.093	1/1:29:0,29,0:0:0:29,0:1031,0:-71.4663,-8.72987,0,-71.4663,-8.72987,-71.4663	1/2:10:0,5,5:0:0:5,5:178,176:-24.2474,-13.8938,-12.3886,-10.6531,0,-9.14799	1/2:82:0,38,44:0:0:38,44:1349,1580:-200.345,-124.316,-112.877,-76.3269,0,-63.0816	1/2:48:0,25,23:0:0:25,23:900,828:-115.75,-65.7532,-58.2274,-50.301,0,-43.3773	1/2:6:0,3,3:0:0:3,3:103,108:-14.8406,-8.6362,-7.73311,-6.50709,0,-5.604	1/1:8:0,8,0:0:0:8,0:277,0:-19.5982,-2.40824,0,-19.5982,-2.40824,-19.5982	1/1:42:0,42,0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chr11	22862277	.	ATCGA	CTCA,CTCGA	152504	PASS	AB=0.495253,0.500633;ABP=3.62876,3.02129;AC=144,40;AF=0.774194,0.215054;AN=186;AO=5495,1591;CIGAR=1X2M1D1M,1X4M;DP=7101;DPB=6001.6;DPRA=78.011,1.16717;EPP=11935.3,3457.82;EPPR=5.18177;GTI=1;LEN=4,1;MEANALT=1.52747,2.23684;MQM=58.5285,59.9874;MQMR=60;NS=93;NUMALT=2;ODDS=2.10111;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=194848,56970;QR=28;RO=1;RPL=0,0;RPP=11935.3,3457.82;RPPR=5.18177;RPR=5495,1591;RUN=1,1;SAF=5495,1591;SAP=11935.3,3457.82;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:86:0,48,38:0:0:48,38:1691,1349:-247.888,-110.266,-95.8163,-137.975,0,-126.536	1/1:110:0,110,0:0:0:110,0:3886,0:-349.888,-33.1133,0,-349.888,-33.1133,-349.888	1/2:128:0,63,63:0:0:63,63:2235,2252:-365.47,-183.638,-164.673,-181.848,0,-162.883	1/1:70:0,70,0:0:0:70,0:2465,0:-221.903,-21.0721,0,-221.903,-21.0721,-221.903	1/1:64:0,64,0:0:0:64,0:2287,0:-206.089,-19.2659,0,-206.089,-19.2659,-206.089	1/1:159:0,159,0:0:0:159,0:5624,0:-505.956,-47.8638,0,-505.956,-47.8638,-505.956	1/1:160:0,160,0:0:0:160,0:5636,0:-506.891,-48.1648,0,-506.891,-48.1648,-506.891	1/2:73:0,38,35:0:0:38,35:1349,1252:-212.363,-102.449,-91.0099,-110.27,0,-99.7339	1/1:125:0,125,0:0:0:125,0:4418,0:-397.565,-37.6288,0,-397.565,-37.6288,-397.565	1/1:15:0,15,0:0:0:15,0:531,0:-48.1108,-4.51545,0,-48.1108,-4.51545,-48.1108	1/2:55:0,24,31:0:0:24,31:861,1112:-161.243,-91.0594,-83.8347,-70.5424,0,-61.2105	1/2:46:0,24,22:0:0:24,22:856,792:-134.761,-64.983,-57.7583,-70.1358,0,-63.5132	1/1:23:0,23,0:0:0:23,0:828,0:-74.7794,-6.92369,0,-74.7794,-6.92369,-74.7794	1/2:50:0,25,25:0:0:25,25:891,896:-146.04,-73.4346,-65.9089,-72.9624,0,-65.4367	1/1:42:0,42,0:0:0:42,0:1483,0:-133.553,-12.6433,0,-133.553,-12.6433,-133.553	1/1:55:0,55,0:0:0:55,0:1940,0:-174.778,-16.5567,0,-174.778,-16.5567,-174.778	1/2:37:0,23,14:0:0:23,14:798,504:-106.341,-41.4837,-34.56,-65.2121,0,-60.9977	1/2:23:0,5,18:0:0:5,18:180,648:-67.9204,-53.2333,-51.7282,-15.0469,0,-9.62837	1/2:139:0,68,71:0:0:68,71:2423,2525:-403.57,-206.127,-185.657,-197.799,0,-176.426	1/1:134:0,134,0:0:0:134,0:4742,0:-426.621,-40.338,0,-426.621,-40.338,-426.621	1/2:125:0,36,89:0:0:36,89:1258,3196:-363.283,-261.066,-250.229,-102.568,0,-75.7763	1/2:68:0,39,29:0:0:39,29:1381,1040:-197.469,-85.1845,-73.4443,-112.641,0,-103.911	1/1:41:0,41,0:0:0:41,0:1470,0:-132.524,-12.3422,0,-132.524,-12.3422,-132.524	1/1:107:0,106,0:0:0:106,0:3748,0:-336.832,-31.9092,0,-336.832,-31.9092,-336.832	1/2:423:0,226,197:0:0:226,197:7970,7052:-1224.19,-575.438,-507.406,-649.111,0,-589.808	1/1:192:0,192,0:0:0:192,0:6855,0:-616.635,-57.7978,0,-616.635,-57.7978,-616.635	1/1:30:0,30,0:0:0:30,0:1059,0:-95.5526,-9.0309,0,-95.5526,-9.0309,-95.5526	1/1:174:0,174,0:0:0:174,0:6197,0:-557.48,-52.3792,0,-557.48,-52.3792,-557.48	1/2:113:0,55,57:0:0:55,57:1944,2043:-324.726,-166.623,-150.066,-158.1,0,-140.941	1/1:80:0,80,0:0:0:80,0:2832,0:-255.045,-24.0824,0,-255.045,-24.0824,-255.045	1/2:9:0,4,5:0:0:4,5:144,180:-26.795,-15.0469,-13.8428,-12.1078,0,-10.6027	1/1:8:0,8,0:0:0:8,0:288,0:-26.2642,-2.40824,0,-26.2642,-2.40824,-26.2642	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	.:.:.:.:.:.:.:.	1/1:5:0,5,0:0:0:5,0:162,0:-14.8987,-1.50515,0,-14.8987,-1.50515,-14.8987	1/2:197:0,100,96:0:0:100,96:3589,3444:-573.434,-280.914,-250.811,-292.519,0,-263.62	1/2:130:0,60,69:0:0:60,69:2127,2468:-374.281,-201.243,-183.181,-173.034,0,-152.263	1/1:42:0,42,0:0:0:42,0:1493,0:-134.663,-12.6433,0,-134.663,-12.6433,-134.663	1/1:2:0,2,0:0:0:2,0:67,0:-6.36266,-0.60206,0,-6.36266,-0.60206,-6.36266	1/1:112:0,112,0:0:0:112,0:3982,0:-358.417,-33.7154,0,-358.417,-33.7154,-358.417	1/1:23:0,23,0:0:0:23,0:822,0:-74.2944,-6.92369,0,-74.2944,-6.92369,-74.2944	1/1:136:0,136,0:0:0:136,0:4857,0:-436.757,-40.9401,0,-436.757,-40.9401,-436.757	1/1:64:0,64,0:0:0:64,0:2284,0:-205.768,-19.2659,0,-205.768,-19.2659,-205.768	1/1:43:0,43,0:0:0:43,0:1505,0:-135.619,-12.9443,0,-135.619,-12.9443,-135.619	1/2:116:0,74,42:0:0:74,42:2644,1489:-337.182,-121.659,-99.383,-215.878,0,-203.235	1/2:80:0,38,42:0:0:38,42:1335,1508:-232.027,-123.371,-111.932,-109.01,0,-96.3668	1/1:145:0,145,0:0:0:145,0:5114,0:-460.105,-43.6494,0,-460.105,-43.6494,-460.105	1/1:134:0,134,0:0:0:134,0:4752,0:-427.59,-40.338,0,-427.59,-40.338,-427.59	1/2:79:1,50,28:1:28:50,28:1780,1008:-224.794,-80.1088,-67.2733,-142.846,0,-136.634	1/1:99:0,99,0:0:0:99,0:3520,0:-316.798,-29.802,0,-316.798,-29.802,-316.798	0/0:1:0,0,0:0:0:0,0:0,0:0,0,0,0,0,0	1/1:100:0,100,0:0:0:100,0:3550,0:-319.707,-30.103,0,-319.707,-30.103,-319.707	1/1:25:0,25,0:0:0:25,0:882,0:-79.6929,-7.52575,0,-79.6929,-7.52575,-79.6929	1/2:11:0,6,5:0:0:6,5:214,180:-32.4902,-15.0469,-13.2407,-17.8016,0,-16.2964	1/2:87:0,42,45:0:0:42,45:1477,1612:-252.014,-131.824,-119.18,-120.545,0,-106.999	1/2:29:0,12,17:0:0:12,17:424,608:-84.4556,-49.9345,-46.3222,-34.876,0,-29.7585	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1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chr11	22862366	.	G	T	164281	PASS	AB=0.484614;ABP=12.0313;AC=149;AF=0.792553;AN=188;AO=7700;CIGAR=1X;DP=9966;DPB=9966;DPRA=0;EPP=16723.3;EPPR=4753.41;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9732;MQMR=59.9753;NS=94;NUMALT=1;ODDS=0.678345;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275038;QR=81072;RO=2263;RPL=7700;RPP=16723.3;RPPR=4753.41;RPR=0;RUN=1;SAF=0;SAP=16723.3;SAR=7700;SRF=0;SRP=4917.05;SRR=2263;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:192:103,89:103:3683:89:3200:-230.424,0,-273.875	1/1:134:0,134:0:0:134:4778:-430.175,-40.338,0	0/1:247:121,126:121:4335:126:4485:-329.462,0,-315.965	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	1/1:68:0,68:0:0:68:2420:-218.056,-20.47,0	1/1:129:0,129:0:0:129:4584:-412.723,-38.8329,0	1/1:177:0,177:0:0:177:6291:-566.283,-53.2823,0	0/1:54:25,29:25:896:29:1040:-77.6587,0,-64.7047	1/1:105:0,105:0:0:105:3766:-339.127,-31.6082,0	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	0/1:46:26,20:26:932:20:716:-50.9203,0,-70.3515	0/1:44:31,13:31:1112:13:464:-28.8522,0,-87.146	1/1:88:0,88:0:0:88:3130:-281.923,-26.4906,0	0/1:32:21,11:21:752:11:389:-25.7147,0,-58.3733	1/1:44:0,44:0:0:44:1572:-141.769,-13.2453,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0	0/1:35:22,13:22:783:13:468:-31.9236,0,-60.2569	0/1:39:19,20:19:684:20:720:-53.3886,0,-50.1502	0/1:334:164,170:164:5871:170:6069:-445.769,0,-427.956	1/1:85:0,85:0:0:85:3029:-272.839,-25.5876,0	0/1:168:114,54:114:4075:54:1925:-122.952,0,-316.206	0/1:44:22,22:22:780:22:792:-58.3604,0,-57.2777	1/1:154:0,154:0:0:154:5502:-495.304,-46.3586,0	1/1:66:0,66:0:0:66:2326:-209.597,-19.868,0	0/1:298:143,155:143:5116:155:5526:-407.75,0,-370.876	1/1:237:1,236:1:36:236:8435:-755.557,-67.7458,0	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	1/1:387:0,387:0:0:387:13818:-1243.39,-116.499,0	0/1:284:148,136:148:5299:136:4888:-354.573,0,-391.552	1/1:111:0,111:0:0:111:3954:-356.051,-33.4143,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:149:59,90:59:2112:90:3228:-245.888,0,-145.491	0/1:178:91,87:91:3264:87:3128:-228.162,0,-240.378	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:170:0,170:0:0:170:6066:-546.039,-51.1751,0	1/1:32:0,32:0:0:32:1123:-101.376,-9.63296,0	1/1:162:0,161:0:0:161:5765:-518.603,-48.4658,0	1/1:44:0,44:0:0:44:1584:-142.851,-13.2453,0	1/1:40:0,40:0:0:40:1427:-128.725,-12.0412,0	0/1:92:34,58:34:1224:58:2080:-159.776,0,-82.7723	0/1:135:78,57:78:2795:57:2040:-143.233,0,-211.15	1/1:204:0,204:0:0:204:7291:-656.241,-61.4101,0	1/1:99:0,99:0:0:99:3521:-317.097,-29.802,0	0/1:193:93,100:93:3327:100:3573:-263.677,0,-241.549	1/1:149:0,149:0:0:149:5340:-480.724,-44.8535,0	0/1:16:3,13:3:108:13:468:-37.6432,0,-5.25869	1/1:225:0,225:0:0:225:8003:-720.293,-67.7318,0	1/1:95:0,95:0:0:95:3405:-306.663,-28.5979,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:163:93,70:93:3336:70:2490:-175.286,0,-251.389	0/1:30:18,12:18:644:12:432:-30.1903,0,-49.2597	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:10:0,10:0:0:10:360:-32.7265,-3.0103,0	1/1:110:0,110:0:0:110:3952:-355.87,-33.1133,0	0/1:103:62,41:62:2228:41:1465:-101.14,0,-169.778	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:206:110,96:110:3944:96:3441:-247.889,0,-293.136	1/1:196:0,196:0:0:196:6986:-628.804,-59.0019,0	0/1:85:37,48:37:1324:48:1724:-129.858,0,-93.8745	1/1:103:0,103:0:0:103:3680:-331.387,-31.0061,0	0/1:218:105,113:105:3763:113:4040:-298.163,0,-273.244	1/1:187:0,187:0:0:187:6677:-601.005,-56.2926,0	0/1:48:20,28:20:720:28:1008:-76.5869,0,-50.6793	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:75:0,74:0:0:74:2641:-237.615,-22.2762,0	0/1:44:20,24:20:716:24:860:-64.4765,0,-51.5224	1/1:100:0,100:0:0:100:3584:-322.767,-30.103,0	1/1:64:0,64:0:0:64:2273:-204.825,-19.2659,0	1/1:219:0,219:0:0:219:7773:-699.606,-65.9256,0	0/1:203:95,108:95:3416:108:3829:-283.697,0,-246.544	1/1:154:1,153:1:36:153:5492:-490.807,-42.7603,0	0/1:105:55,50:55:1980:50:1764:-127.435,0,-146.866	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:119:60,59:60:2148:59:2116:-154.886,0,-157.765	1/1:160:0,160:0:0:160:5707:-513.698,-48.1648,0	1/1:277:0,277:0:0:277:9874:-888.587,-83.3853,0	0/1:91:50,41:50:1800:41:1476:-105.742,0,-134.888	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:131:65,66:65:2328:66:2364:-173.569,0,-170.345	1/1:31:0,31:0:0:31:1098:-99.1282,-9.33193,0	0/1:59:34,25:34:1220:25:900:-63.5602,0,-92.346	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:138:80,58:80:2845:58:2084:-146.288,0,-214.745	0/1:43:27,16:27:972:16:576:-39.2307,0,-74.8536	1/1:120:0,120:0:0:120:4274:-384.836,-36.1236,0	1/1:56:0,55:0:0:55:1972:-177.395,-16.5567,0
chr11	22995337	.	A	T	1252.19	PASS	AB=0.244485;ABP=1236.98;AC=32;AF=0.170213;AN=188;AO=555;CIGAR=1X;DP=5153;DPB=5153;DPRA=1.37544;EPP=1190.87;EPPR=9747.69;GTI=14;LEN=1;MEANALT=1.04651;MQM=28.0649;MQMR=28.4733;NS=94;NUMALT=1;ODDS=0.167327;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=19866;QR=164221;RO=4591;RPL=555;RPP=1208.18;RPPR=9946.2;RPR=0;RUN=1;SAF=553;SAP=1190.87;SAR=2;SRF=4568;SRP=9773.47;SRR=23;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:716:0:0:0,-6.0206,-49.2587	0/0:48:44,4:44:1580:4:144:0,-5.08016,-102.124	0/0:42:42,0:42:1489:0:0:0,-12.6433,-104.689	0/1:45:28,17:28:1000:17:608:-27.1807,0,-55.1793	0/0:15:15,0:15:536:0:0:0,-4.51545,-37.6024	0/0:13:13,0:13:468:0:0:0,-3.91339,-31.1882	0/0:74:74,0:74:2656:0:0:0,-22.2762,-184.288	0/0:60:60,0:60:2137:0:0:0,-18.0618,-149.679	0/1:83:70,13:70:2474:13:468:-5.76391,0,-148.74	0/0:61:61,0:61:2169:0:0:0,-18.3628,-152.317	0/0:47:47,0:47:1679:0:0:0,-14.1484,-118.024	0/1:76:56,20:56:2012:20:720:-25.8395,0,-119.632	0/1:85:69,15:69:2448:15:540:-11.3302,0,-146.868	0/0:89:89,0:89:3204:0:0:0,-26.7917,-222.538	0/0:52:47,5:47:1673:5:180:0,-3.47,-106.015	0/0:44:44,0:44:1576:0:0:0,-13.2453,-110.222	0/0:77:77,0:77:2743:0:0:0,-23.1793,-193.817	0/1:53:35,18:35:1252:18:648:-28.0776,0,-72.1979	0/1:33:24,8:24:860:8:288:-9.35506,0,-50.8379	0/1:69:48,21:48:1728:21:752:-28.6776,0,-100.061	0/0:88:88,0:88:3117:0:0:0,-26.4906,-218.935	0/1:49:35,14:35:1256:14:504:-18.7219,0,-72.0183	0/1:44:35,9:35:1252:9:324:-6.80471,0,-75.7251	0/0:85:85,0:85:3048:0:0:0,-25.5875,-214.917	0/0:25:25,0:25:900:0:0:0,-7.52575,-63.4446	0/1:142:117,25:117:4204:25:900:-18.6649,0,-247.402	0/0:92:89,0:89:3192:0:0:0,-26.7917,-222.725	0/0:24:23,1:23:828:1:36:0,-4.57612,-55.5619	0/0:71:71,0:71:2529:0:0:0,-21.3731,-173.739	0/1:81:58,23:58:2072:23:813:-30.1239,0,-120.953	0/0:51:51,0:51:1828:0:0:0,-15.3525,-127.255	0/1:4:3,1:3:108:1:36:-1.44448,0,-6.69491	0/0:14:14,0:14:500:0:0:0,-4.21442,-35.7394	0/0:6:6,0:6:216:0:0:0,-1.80618,-15.5159	0/0:6:6,0:6:216:0:0:0,-1.80618,-15.5159	0/0:5:5,0:5:180:0:0:0,-1.50515,-12.977	0/1:207:160,47:160:5737:47:1684:-53.1282,0,-333.854	0/1:80:61,19:61:2173:19:684:-21.834,0,-128.022	0/0:48:48,0:48:1720:0:0:0,-14.4494,-116.07	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.89903	0/0:46:46,0:46:1637:0:0:0,-13.8474,-114.961	0/0:14:14,0:14:496:0:0:0,-4.21442,-33.5642	0/0:47:47,0:47:1692:0:0:0,-14.1484,-118.829	0/0:60:60,0:60:2156:0:0:0,-18.0618,-150.455	0/0:47:47,0:47:1692:0:0:0,-14.1484,-119.458	0/1:55:44,11:44:1580:11:396:-9.68245,0,-92.32	0/1:46:38,8:38:1356:8:288:-7.22056,0,-82.2482	0/0:53:52,0:52:1864:0:0:0,-15.6536,-129.776	0/0:61:61,0:61:2169:0:0:0,-18.3628,-152.034	0/1:44:31,13:31:1108:13:459:-17.458,0,-65.1018	0/0:123:123,0:123:4397:0:0:0,-37.0267,-300.976	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.82108	0/0:63:62,1:62:2224:1:36:0,-16.3163,-152.633	0/0:31:30,1:30:1065:1:36:0,-6.68333,-69.6657	0/1:7:6,1:6:216:1:36:-0.54139,0,-12.824	0/1:40:30,10:30:1080:10:356:-11.8341,0,-62.6822	0/1:23:18,5:18:648:5:180:-5.09271,0,-36.8516	0/0:3:3,0:3:108:0:0:0,-0.90309,-7.66137	0/0:9:9,0:9:324:0:0:0,-2.70927,-22.4158	0/0:55:55,0:55:1980:0:0:0,-16.5566,-138.9	0/1:142:98,44:98:3524:44:1569:-63.1243,0,-203.972	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.82108	0/1:71:58,13:58:2046:13:468:-9.88035,0,-118.996	0/0:74:73,1:73:2605:1:36:0,-19.6276,-178.654	0/1:33:17,16:17:612:16:576:-28.306,0,-33.2722	0/0:20:20,0:20:720:0:0:0,-6.0206,-49.9346	0/1:78:58,20:58:2065:20:720:-23.8737,0,-118.846	0/0:76:75,1:75:2684:1:36:0,-20.2297,-186.241	0/1:20:13,7:13:468:7:252:-10.9304,0,-24.972	0/0:78:77,0:77:2760:0:0:0,-23.1793,-191.458	0/0:112:112,0:112:4024:0:0:0,-33.7154,-274.1	0/1:13:9,4:9:320:4:144:-5.88643,0,-17.5533	0/0:59:59,0:59:2116:0:0:0,-17.7608,-146.59	0/0:46:46,0:46:1629:0:0:0,-13.8474,-115.67	0/0:113:113,0:113:4052:0:0:0,-34.0164,-281.169	0/1:53:43,10:43:1540:10:360:-8.84653,0,-92.2447	0/0:48:47,1:47:1643:1:36:0,-11.8008,-110.432	0/0:31:29,2:29:1029:2:72:0,-4.29959,-66.8225	0/0:8:8,0:8:288:0:0:0,-2.40824,-20.5939	0/0:46:41,5:41:1472:5:180:0,-2.03273,-91.6609	0/0:22:22,0:22:773:0:0:0,-6.62266,-54.1186	0/0:97:97,0:97:3476:0:0:0,-29.1999,-243.057	0/1:103:81,22:81:2900:22:788:-21.2188,0,-172.453	0/0:43:43,0:43:1540:0:0:0,-12.9443,-108.845	0/0:55:55,0:55:1976:0:0:0,-16.5566,-139.29	0/1:125:97,28:97:3475:28:978:-28.1865,0,-201.659	0/0:31:31,0:31:1112:0:0:0,-9.33193,-78.7466	0/1:82:63,19:63:2264:19:684:-22.5909,0,-134.688	0/0:66:66,0:66:2363:0:0:0,-19.868,-164.726	0/0:25:25,0:25:877:0:0:0,-7.52575,-61.0042	0/1:119:94,25:94:3380:25:883:-25.32,0,-199.934	0/1:71:45,26:45:1588:26:932:-39.204,0,-90.8679	0/0:55:55,0:55:1972:0:0:0,-16.5566,-137.049	0/0:98:97,1:97:3480:1:36:0,-26.8523,-240.604
chr11	23080471	.	G	C	77614.6	PASS	AB=0.501976;ABP=3.08755;AC=147;AF=0.790323;AN=186;AO=3703;CIGAR=1X;DP=4845;DPB=4845;DPRA=0;EPP=8009.27;EPPR=2456.78;GTI=0;LEN=1;MEANALT=1.07527;MQM=59.986;MQMR=59.9912;NS=93;NUMALT=1;ODDS=0.0156855;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131151;QR=40341;RO=1134;RPL=3701;RPP=8026.61;RPPR=2465.46;RPR=2;RUN=1;SAF=3697;SAP=7991.94;SAR=6;SRF=1133;SRP=2456.78;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:55:31,24:31:1093:24:845:-59.8104,0,-82.121	1/1:62:0,62:0:0:62:2207:-198.895,-18.6639,0	0/1:71:19,51:19:676:51:1828:-143.369,0,-39.7363	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	1/1:59:0,59:0:0:59:2051:-184.857,-17.7608,0	0/1:40:22,17:22:784:17:597:-41.9564,0,-58.7841	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:84:0,84:0:0:84:2973:-267.803,-25.2865,0	0/1:61:31,30:31:1093:30:1064:-77.7088,0,-80.3148	0/1:66:36,28:36:1269:28:1008:-71.4106,0,-94.8851	1/1:122:2,120:2:72:120:4233:-374.315,-29.8889,0	0/1:55:24,31:24:864:31:1088:-81.6696,0,-61.5259	1/1:54:0,54:0:0:54:1923:-173.346,-16.2556,0	1/1:71:0,71:0:0:71:2504:-225.611,-21.3731,0	0/1:52:21,31:21:748:31:1082:-82.0336,0,-51.9917	0/1:41:16,25:16:576:25:883:-67.437,0,-39.8328	0/1:60:24,36:24:860:36:1275:-96.9905,0,-59.66	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:47:30,17:30:1076:17:603:-40.4511,0,-83.0044	0/1:41:29,12:29:1021:12:432:-26.879,0,-79.858	1/1:29:0,29:0:0:29:1021:-92.2003,-8.72987,0	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	0/1:145:91,54:91:3240:54:1928:-130.147,0,-248.171	1/1:85:0,85:0:0:85:2997:-269.96,-25.5876,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:107:1,105:1:36:105:3751:-334.191,-28.6707,0	0/1:52:20,32:20:720:32:1125:-85.9001,0,-49.4752	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:174:85,89:85:3008:89:3174:-233.505,0,-218.572	0/1:91:42,48:42:1512:48:1715:-127.27,0,-109.01	1/1:66:0,66:0:0:66:2294:-206.717,-19.868,0	.:.:.:.:.:.:.:.	1/1:66:0,66:0:0:66:2346:-211.396,-19.868,0	1/1:36:0,36:0:0:36:1258:-113.518,-10.8371,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:56:0,56:0:0:56:1994:-179.733,-16.8577,0	1/1:54:1,53:1:36:53:1870:-164.977,-12.6573,0	0/1:69:42,27:42:1463:27:955:-65.4939,0,-111.187	0/1:56:33,23:33:1180:23:813:-56.633,0,-89.6504	1/1:76:0,75:0:0:75:2655:-238.835,-22.5773,0	1/1:50:0,50:0:0:50:1760:-158.681,-15.0515,0	0/1:60:32,28:32:1148:28:1008:-72.9746,0,-85.568	1/1:54:0,54:0:0:54:1924:-173.437,-16.2556,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:71:0,71:0:0:71:2515:-226.6,-21.3731,0	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	0/1:11:3,8:3:108:8:273:-21.5889,0,-6.76384	0/1:51:34,17:34:1224:17:608:-39.6995,0,-95.1145	0/1:25:16,9:16:568:9:324:-21.9801,0,-43.9261	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:143:47,96:47:1684:96:3391:-262.361,0,-108.8	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:90:47,43:47:1688:43:1540:-111.8,0,-125.114	1/1:84:0,84:0:0:84:3024:-272.389,-25.2865,0	0/1:34:15,19:15:540:19:680:-51.2941,0,-38.7015	1/1:43:0,43:0:0:43:1535:-138.442,-12.9443,0	0/1:61:33,28:33:1188:28:997:-71.6817,0,-88.8658	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:22:8,14:8:288:14:487:-37.5365,0,-19.6447	1/1:18:0,18:0:0:18:625:-56.5725,-5.41854,0	1/1:125:0,125:0:0:125:4379:-394.285,-37.6288,0	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0812	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:54:19,35:19:680:35:1240:-95.6488,0,-45.2735	1/1:48:0,48:0:0:48:1692:-152.555,-14.4494,0	0/1:29:17,12:17:612:12:428:-30.1289,0,-46.6827	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:38:20,18:20:705:18:644:-46.8508,0,-52.3336	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:89:1,88:1:36:88:3129:-278.237,-23.1934,0	0/1:87:36,51:36:1268:51:1807:-136.721,0,-88.2331	1/1:72:0,72:0:0:72:2509:-226.06,-21.6742,0	1/1:61:0,61:0:0:61:2142:-193.045,-18.3628,0	0/1:120:61,59:61:2168:59:2030:-146.843,0,-159.263	1/1:31:0,31:0:0:31:1065:-96.1513,-9.33193,0	0/1:88:41,47:41:1435:47:1662:-123.375,0,-102.954	1/1:52:0,52:0:0:52:1846:-166.419,-15.6536,0	1/1:84:0,84:0:0:84:2974:-267.892,-25.2865,0	0/1:108:48,60:48:1708:60:2105:-157.207,0,-121.495	0/1:49:38,11:38:1322:11:396:-21.2323,0,-104.525	1/1:42:0,41:0:0:41:1451:-130.525,-12.3422,0	1/1:86:0,86:0:0:86:3032:-273.108,-25.8886,0
chr11	23148702	.	TTCC	CTCC,CTCA	129432	PASS	AB=0.466096,0.529265;ABP=30.9868,23.854;AC=147,41;AF=0.781915,0.218085;AN=188;AO=4565,1503;CIGAR=1X3M,1X2M1X;DP=6102;DPB=6101.5;DPRA=21.8602,1.77737;EPP=8958.57,2953.27;EPPR=5.18177;GTI=3;LEN=1,4;MEANALT=1.91398,2.46296;MQM=42.1768,49.6607;MQMR=58;NS=94;NUMALT=2;ODDS=0.644968;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=161376,52619;QR=34;RO=1;RPL=4452,1466;RPP=8958.57,2953.27;RPPR=5.18177;RPR=113,37;RUN=1,1;SAF=4565,1503;SAP=9915.78,3266.73;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,56,0:0:0:56,0:1958,0:-171.125,-16.8577,0,-171.125,-16.8577,-171.125	1/2:37:0,15,22:0:0:15,22:527,766:-103.12,-61.7078,-57.1924,-41.7538,0,-35.1311	1/1:144:1,143,0:1:34:143,0:5063,0:-437.015,-39.95,0,-437.316,-43.0473,-440.073	1/2:190:0,84,104:0:0:84,104:2983,3669:-533.621,-295.03,-269.743,-238.712,0,-207.405	1/1:44:0,43,1:0:0:43,1:1517,22:-127.387,-12.9443,0,-125.71,-11.0457,-125.409	1/1:35:0,35,0:0:0:35,0:1256,0:-109.898,-10.5361,0,-109.898,-10.5361,-109.898	1/1:123:0,120,1:0:0:120,1:4246,24:-375.642,-36.1236,0,-373.821,-34.3163,-373.52	1/1:68:0,67,0:0:0:67,0:2349,0:-204.498,-20.169,0,-204.498,-20.169,-204.498	1/2:124:0,63,61:0:0:63,61:2228,2156:-349.341,-174.643,-155.678,-175.045,0,-156.682	1/1:32:0,32,0:0:0:32,0:1125,0:-99.8745,-9.63296,0,-99.8745,-9.63296,-99.8745	1/1:20:0,19,0:0:0:19,0:662,0:-58.6482,-5.71957,0,-58.6482,-5.71957,-58.6482	1/2:71:0,34,37:0:0:34,37:1188,1310:-199.81,-106.424,-96.1886,-93.7319,0,-82.5937	1/2:52:0,31,20:0:0:31,20:1104,718:-144.66,-57.9202,-48.5882,-86.9004,0,-80.8798	1/1:18:0,18,0:0:0:18,0:640,0:-54.1503,-5.41854,0,-54.1503,-5.41854,-54.1503	1/2:47:0,27,20:0:0:27,20:955,703:-133.643,-56.9519,-48.8241,-77.039,0,-71.0184	1/1:46:0,46,0:0:0:46,0:1635,0:-137.129,-13.8474,0,-137.129,-13.8474,-137.129	1/1:23:0,23,0:0:0:23,0:824,0:-72.0981,-6.92369,0,-72.0981,-6.92369,-72.0981	1/2:16:0,13,3:0:0:13,3:463,102:-44.8438,-8.57221,-4.65882,-36.6109,0,-35.7078	1/2:12:0,7,5:0:0:7,5:252,174:-34.2465,-14.4243,-12.3171,-20.1692,0,-18.6641	1/2:119:0,60,59:0:0:60,59:2137,2078:-337.428,-166.601,-148.539,-171.175,0,-153.414	1/1:101:0,100,1:0:0:100,1:3526,36:-295.44,-30.103,0,-293.439,-27.8453,-293.138	1/2:164:0,53,110:0:0:53,110:1875,3879:-466.521,-315.175,-299.22,-151.441,0,-118.328	1/2:121:0,53,68:0:0:53,68:1879,2384:-341.625,-191.706,-175.751,-150.266,0,-129.796	1/1:18:0,18,0:0:0:18,0:646,0:-54.3184,-5.41854,0,-54.3184,-5.41854,-54.3184	1/1:61:0,61,0:0:0:61,0:2147,0:-180.741,-18.3628,0,-180.741,-18.3628,-180.741	1/2:198:0,96,102:0:0:96,102:3407,3548:-562.261,-287.577,-258.678,-275.032,0,-244.327	1/1:172:0,169,1:0:0:169,1:5951,36:-498.906,-50.8741,0,-495.979,-47.912,-495.678	1/1:20:0,20,0:0:0:20,0:689,0:-58.3453,-6.0206,0,-58.3453,-6.0206,-58.3453	1/1:221:0,218,1:0:0:218,1:7748,24:-690.301,-65.6245,0,-688.443,-63.7865,-688.142	1/2:115:0,58,56:0:0:58,56:2028,1969:-311.792,-159.268,-141.808,-152.542,0,-135.684	1/1:96:0,95,0:0:0:95,0:3343,0:-296.547,-28.5979,0,-296.547,-28.5979,-296.547	1/2:2:0,1,1:0:0:1,1:33,36:-5.65422,-3.28545,-2.98442,-2.69805,0,-2.39702	1/1:9:0,9,0:0:0:9,0:323,0:-27.3044,-2.70927,0,-27.3044,-2.70927,-27.3044	1/1:4:0,4,0:0:0:4,0:144,0:-12.7105,-1.20412,0,-12.7105,-1.20412,-12.7105	1/1:1:0,1,0:0:0:1,0:36,0:-3.4807,-0.30103,0,-3.4807,-0.30103,-3.4807	1/1:5:0,5,0:0:0:5,0:171,0:-15.2774,-1.50515,0,-15.2774,-1.50515,-15.2774	1/2:130:0,47,83:0:0:47,83:1656,2927:-371.338,-237.955,-223.807,-133.732,0,-108.746	1/2:109:0,46,60:0:0:46,60:1635,2123:-295.022,-172.242,-158.395,-122.836,0,-104.774	1/1:21:0,21,0:0:0:21,0:747,0:-65.3599,-6.32163,0,-65.3599,-6.32163,-65.3599	1/1:2:0,2,0:0:0:2,0:68,0:-6.10554,-0.60206,0,-6.10554,-0.60206,-6.10554	1/1:129:0,128,0:0:0:128,0:4514,0:-379.356,-38.5318,0,-379.356,-38.5318,-379.356	1/1:19:0,19,0:0:0:19,0:678,0:-56.9253,-5.71957,0,-56.9253,-5.71957,-56.9253	1/1:88:0,86,1:0:0:86,1:3005,29:-251.837,-25.8886,0,-249.958,-23.9919,-249.657	1/1:20:0,20,0:0:0:20,0:701,0:-61.8561,-6.0206,0,-61.8561,-6.0206,-61.8561	1/1:31:0,31,0:0:0:31,0:1079,0:-95.5105,-9.33193,0,-95.5105,-9.33193,-95.5105	1/2:129:0,67,62:0:0:67,62:2373,2143:-364.921,-173.421,-153.252,-191.847,0,-173.183	1/2:84:0,47,37:0:0:47,37:1652,1268:-231.371,-101.625,-87.4765,-130.085,0,-118.946	1/1:117:0,116,0:0:0:116,0:4118,0:-365.612,-34.9195,0,-365.612,-34.9195,-365.612	1/1:84:0,84,0:0:0:84,0:2963,0:-261.878,-25.2865,0,-261.878,-25.2865,-261.878	1/2:63:0,29,34:0:0:29,34:1044,1171:-177.614,-94.2684,-85.5385,-83.6927,0,-73.4577	1/1:89:0,89,0:0:0:89,0:3173,0:-283.137,-26.7917,0,-283.137,-26.7917,-283.137	1/2:4:0,2,2:0:0:2,2:72,72:-11.772,-6.17488,-5.57282,-5.94787,0,-5.34581	1/1:65:0,65,0:0:0:65,0:2305,0:-201.531,-19.567,0,-201.531,-19.567,-201.531	1/1:68:0,65,3:0:0:65,3:2302,86:-205.061,-19.567,0,-199.059,-13.3045,-198.156	1/2:6:0,3,3:0:0:3,3:102,108:-16.891,-9.11746,-8.21437,-8.11345,0,-7.21036	1/2:110:0,52,58:0:0:52,58:1770,2017:-295.939,-163.276,-147.622,-132.994,0,-115.534	1/2:51:0,26,25:0:0:26,25:928,866:-144.29,-69.9245,-62.0978,-74.712,0,-67.186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chr11	23160939	.	G	A	132773	PASS	AB=0.674172;ABP=623.273;AC=152;AF=0.817204;AN=186;AO=6081;CIGAR=1X;DP=6870;DPB=6870;DPRA=0;EPP=13207.7;EPPR=1657.68;GTI=7;LEN=1;MEANALT=1.17204;MQM=59.8696;MQMR=59.9922;NS=93;NUMALT=1;ODDS=0.650746;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=217248;QR=27412;RO=766;RPL=0;RPP=13207.7;RPPR=1657.68;RPR=6081;RUN=1;SAF=6081;SAP=13207.7;SAR=0;SRF=766;SRP=1666.36;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:809:-73.1283,-6.92369,0	0/1:84:30,53:30:1080:53:1881:-144.221,0,-72.1679	1/1:132:0,130:0:0:130:4631:-416.594,-39.1339,0	0/1:94:29,65:29:1031:65:2321:-180.606,0,-64.8058	1/1:72:0,72:0:0:72:2584:-232.786,-21.6742,0	1/1:57:0,57:0:0:57:2014:-181.529,-17.1587,0	1/1:133:0,133:0:0:133:4761:-428.648,-40.037,0	1/1:99:0,98:0:0:98:3505:-313.873,-29.5009,0	0/1:33:5,28:5:180:28:1000:-80.3781,0,-6.61807	1/1:113:0,113:0:0:113:4041:-363.854,-34.0164,0	1/1:43:0,43:0:0:43:1529:-137.901,-12.9443,0	0/1:55:13,42:13:468:42:1508:-119.457,0,-25.903	0/1:55:28,27:28:991:27:972:-71.2413,0,-72.9469	1/1:56:0,54:0:0:54:1944:-174.894,-16.2556,0	0/1:49:15,34:15:532:34:1220:-95.3563,0,-33.4626	1/1:46:0,46:0:0:46:1637:-147.617,-13.8474,0	1/1:40:0,40:0:0:40:1402:-126.469,-12.0412,0	0/1:35:13,21:13:468:21:752:-57.4087,0,-31.8648	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:97:21,76:21:756:76:2724:-216.202,0,-39.1673	1/1:107:0,107:0:0:107:3820:-343.983,-32.2102,0	0/1:50:12,38:12:432:38:1360:-107.543,0,-24.1697	0/1:40:4,36:4:144:36:1292:-104.543,0,-1.27242	1/1:111:0,111:0:0:111:3984:-358.722,-33.4143,0	1/1:62:0,62:0:0:62:2201:-198.352,-18.6639,0	0/1:147:32,115:32:1131:115:4120:-326.556,0,-57.8463	1/1:168:0,167:0:0:167:5988:-538.597,-50.272,0	1/1:32:0,32:0:0:32:1148:-103.615,-9.63296,0	1/1:262:0,262:0:0:262:9343:-840.796,-78.8699,0	0/1:75:20,55:20:720:55:1980:-155.897,0,-42.5515	1/1:90:0,90:0:0:90:3205:-288.584,-27.0927,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:7:0,7:0:0:7:222:-20.2882,-2.10721,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:119:44,75:44:1576:75:2669:-204.632,0,-106.309	0/1:108:20,88:20:720:88:3123:-248.687,0,-32.6175	1/1:42:0,42:0:0:42:1478:-133.307,-12.6433,0	.:.:.:.:.:.:.:.	1/1:142:0,142:0:0:142:5047:-454.371,-42.7463,0	1/1:33:0,33:0:0:33:1188:-107.224,-9.93399,0	1/1:158:0,158:0:0:158:5663:-509.748,-47.5627,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:44:0,43:0:0:43:1544:-138.88,-12.9443,0	1/1:39:2,37:2:72:37:1316:-111.897,-4.90345,0	0/1:95:14,81:14:500:81:2896:-232.276,0,-16.7383	1/1:158:0,154:0:0:154:5501:-494.847,-46.3586,0	1/1:130:0,129:0:0:129:4621:-415.691,-38.8329,0	0/1:103:34,69:34:1220:69:2480:-192.447,0,-79.1007	1/1:130:0,130:0:0:130:4664:-419.918,-39.1339,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:121:0,121:0:0:121:4325:-389.416,-36.4246,0	1/1:68:0,68:0:0:68:2410:-217.154,-20.47,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:91:33,58:33:1176:58:2073:-159.314,0,-78.754	1/1:30:2,28:2:72:28:996:-83.1182,-2.19418,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:24:0,24:0:0:24:848:-76.6397,-7.22472,0	1/1:41:0,41:0:0:41:1458:-131.514,-12.3422,0	0/1:71:19,52:19:680:52:1868:-147.015,0,-40.156	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:169:77,92:77:2764:92:3285:-244.986,0,-198.127	1/1:192:0,192:0:0:192:6876:-618.769,-57.7978,0	0/1:53:8,45:8:284:45:1605:-128.781,0,-9.94411	1/1:86:0,86:0:0:86:3076:-276.981,-25.8886,0	0/1:80:22,58:22:792:58:2084:-163.748,0,-47.5233	1/1:114:0,114:0:0:114:4080:-367.386,-34.3174,0	0/1:18:7,11:7:252:11:373:-28.4767,0,-17.6104	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	1/1:47:0,47:0:0:47:1688:-152.049,-14.1484,0	0/1:14:2,12:2:72:12:413:-33.2834,0,-2.6223	1/1:136:0,136:0:0:136:4868:-438.208,-40.9401,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:120:0,119:0:0:119:4245:-381.866,-35.8226,0	0/1:109:47,62:47:1688:62:2224:-167.61,0,-119.395	1/1:86:0,86:0:0:86:2997:-269.918,-25.8886,0	0/1:112:56,56:56:2000:56:2016:-147.998,0,-146.558	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:85:26,59:26:936:59:2116:-165.12,0,-58.9719	1/1:84:0,84:0:0:84:2985:-268.881,-25.2865,0	1/1:159:0,157:0:0:157:5640:-507.357,-47.2617,0	0/1:77:32,43:32:1144:43:1544:-116.314,0,-80.3326	1/1:46:0,46:0:0:46:1656:-149.315,-13.8474,0	1/1:68:0,68:0:0:68:2444:-220.214,-20.47,0	0/1:84:36,48:36:1267:48:1720:-129.799,0,-89.0454	1/1:49:0,48:0:0:48:1708:-153.645,-14.4494,0	0/1:59:23,35:23:828:35:1260:-95.8244,0,-57.0246	1/1:58:0,57:0:0:57:2048:-184.197,-17.1587,0	1/1:29:0,29:0:0:29:1025:-92.5594,-8.72987,0	0/1:46:15,31:15:540:31:1116:-86.9034,0,-35.0892	0/1:29:17,12:17:608:12:428:-30.1289,0,-46.3222	1/1:120:0,120:0:0:120:4266:-384.11,-36.1236,0	1/1:78:0,77:0:0:77:2764:-248.638,-23.1793,0
chr11	23440828	.	T	C	21182.9	PASS	AB=0.498429;ABP=3.06489;AC=40;AF=0.212766;AN=188;AO=1275;CIGAR=1X;DP=6174;DPB=6174;DPRA=1.03488;EPP=2771.64;EPPR=10638.9;GTI=1;LEN=1;MEANALT=1.02381;MQM=59.982;MQMR=59.9837;NS=94;NUMALT=1;ODDS=0.7576;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45526;QR=175641;RO=4898;RPL=1275;RPP=2771.64;RPPR=10638.9;RPR=0;RUN=1;SAF=0;SAP=2771.64;SAR=1275;SRF=0;SRP=10638.9;SRR=4898;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:81:42,39:42:1504:39:1400:-101.916,0,-111.271	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:99:53,46:53:1904:46:1652:-119.167,0,-141.836	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.186	0/0:104:104,0:104:3713:0:0:0,-31.3071,-334.371	0/1:33:17,16:17:612:16:572:-41.8794,0,-45.4794	0/0:57:57,0:57:2022:0:0:0,-17.1587,-182.249	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:56:23,33:23:828:33:1184:-90.0106,0,-57.9864	0/1:57:30,27:30:1080:27:968:-70.2787,0,-80.3545	0/0:47:47,0:47:1673:0:0:0,-14.1484,-150.855	0/1:50:25,25:25:896:25:896:-65.9089,0,-65.9089	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/1:62:35,27:35:1256:27:949:-67.0589,0,-94.6814	0/1:46:25,21:25:900:21:752:-54.1589,0,-67.4736	0/1:98:46,52:46:1648:52:1864:-138.538,0,-119.108	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:73:24,49:24:845:49:1764:-137.069,0,-54.3919	0/1:23:9,14:9:324:14:481:-36.6914,0,-22.5822	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/1:211:116,94:116:4157:94:3360:-239.04,0,-310.733	0/0:169:169,0:169:6050:0:0:0,-50.8741,-544.599	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.607	0/1:98:46,52:46:1656:52:1872:-139.257,0,-119.827	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:126:66,60:66:2368:60:2111:-152.324,0,-175.448	0/1:111:55,56:55:1965:56:2012:-147.939,0,-143.709	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:100:100,0:100:3600:0:0:0,-30.103,-324.205	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.226	0/1:81:49,32:49:1756:32:1131:-77.7132,0,-133.941	0/1:69:40,29:40:1440:29:1017:-71.0682,0,-109.127	0/0:112:112,0:112:4024:0:0:0,-33.7154,-362.347	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:82:47,35:47:1688:35:1252:-88.3006,0,-127.522	0/0:170:170,0:170:6093:0:0:0,-51.1751,-548.413	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:522:522,0:522:18748:0:0:0,-157.138,-1686.88	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:67:28,39:28:1004:39:1404:-106.49,0,-70.5069	0/1:26:15,11:15:525:11:396:-28.156,0,-39.7513	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:93:44,49:44:1576:49:1756:-130.328,0,-114.133	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:87:46,41:46:1648:41:1461:-105.594,0,-122.419	0/0:93:90,3:90:3232:3:108:0,-17.9206,-281.026	0/1:68:31,37:31:1112:37:1320:-98.6273,0,-79.9213	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:82:51,31:51:1836:31:1101:-74.7139,0,-140.836	0/0:80:79,1:79:2825:1:36:0,-20.4841,-250.803	0/1:24:10,14:10:360:14:489:-37.1142,0,-25.5196	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/1:22:13,9:13:468:9:320:-22.5197,0,-35.837	0/0:91:90,1:90:3232:1:32:0,-24.1944,-287.894	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/1:105:50,55:50:1777:55:1957:-144.795,0,-128.603	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.989	0/1:68:32,36:32:1152:36:1296:-96.4739,0,-83.5201	0/1:3:2,1:2:72:1:32:-2.29009,0,-5.93363	0/1:70:32,38:32:1152:38:1345:-100.276,0,-82.918	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:161:161,0:161:5757:0:0:0,-48.4658,-518.245	0/1:82:49,33:49:1760:33:1188:-82.5441,0,-133.999	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:83:37,46:37:1332:46:1648:-123.623,0,-95.1969	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:69:28,41:28:1004:41:1468:-111.645,0,-69.9048	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:80:37,43:37:1328:43:1532:-114.091,0,-95.7398	0/1:45:15,30:15:540:30:1076:-83.6065,0,-35.3902	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818
chr11	23497154	.	AACA	AACG	70717.5	PASS	AB=0.478022;ABP=11.4098;AC=147;AF=0.781915;AN=188;AO=3333;CIGAR=3M1X;DP=4396;DPB=4396;DPRA=47.2581;EPP=7119.44;EPPR=2215.95;GTI=1;LEN=1;MEANALT=1.23656;MQM=53.6028;MQMR=56.4793;NS=94;NUMALT=1;ODDS=1.10038;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=118849;QR=36582;RO=1039;RPL=11;RPP=7145.3;RPPR=2215.95;RPR=3322;RUN=1;SAF=3;SAP=7214.49;SAR=3330;SRF=0;SRP=2259.17;SRR=1039;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:752:-67.8926,-6.32163,0	0/1:65:29,36:29:993:36:1283:-95.9701,0,-70.0465	1/1:39:0,39:0:0:39:1384:-124.627,-11.7402,0	0/1:56:29,26:29:1037:26:936:-67.3599,0,-75.6317	1/1:14:0,14:0:0:14:504:-45.6125,-4.21442,0	1/1:23:0,23:0:0:23:813:-73.315,-6.92369,0	1/1:64:0,64:0:0:64:2275:-204.282,-19.2659,0	1/1:40:0,39:0:0:39:1404:-126.043,-11.7402,0	0/1:56:28,28:28:965:28:1008:-74.0284,0,-70.2606	1/1:75:0,75:0:0:75:2676:-239.578,-22.5773,0	1/1:29:0,29:0:0:29:1044:-93.9765,-8.72987,0	0/1:45:24,20:24:846:20:712:-50.7817,0,-61.9251	0/1:31:14,17:14:492:17:590:-43.9747,0,-34.3064	1/1:46:0,46:0:0:46:1624:-146.115,-13.8474,0	0/1:25:16,9:16:564:9:320:-21.5071,0,-43.5305	1/1:19:0,19:0:0:19:666:-60.1755,-5.71957,0	1/1:48:0,46:0:0:46:1620:-145.529,-13.8474,0	0/1:29:20,8:20:709:8:288:-17.4368,0,-54.7721	0/1:38:19,19:19:667:19:675:-49.4859,0,-48.8488	0/1:81:36,44:36:1279:44:1576:-117.311,0,-90.9724	1/1:81:0,80:0:0:80:2859:-256.571,-24.0824,0	0/1:58:27,28:27:943:28:999:-73.0757,0,-68.0189	0/1:62:38,24:38:1324:24:864:-59.1361,0,-100.706	1/1:78:1,77:1:36:77:2735:-242.3,-19.8872,0	1/1:25:0,25:0:0:25:900:-81.1504,-7.52575,0	0/1:178:86,90:86:3032:90:3219:-233.621,0,-219.625	1/1:105:0,105:0:0:105:3753:-336.268,-31.6082,0	1/1:20:0,20:0:0:20:698:-63.0458,-6.0206,0	1/1:98:0,98:0:0:98:3491:-312.682,-29.5009,0	0/1:62:33,28:33:1166:28:986:-70.1747,0,-86.4325	1/1:58:1,57:1:36:57:2032:-178.803,-13.8615,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.92879	1/1:10:0,10:0:0:10:360:-32.7002,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.1669,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5412,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.82552,-0.60206,0	0/1:95:52,42:52:1849:42:1485:-104.915,0,-137.871	0/1:77:27,50:27:961:50:1788:-137.789,0,-63.4545	1/1:24:0,24:0:0:24:856:-77.2352,-7.22472,0	1/1:4:0,4:0:0:4:144:-13.27,-1.20412,0	1/1:63:0,63:0:0:63:2255:-202.848,-18.9649,0	1/1:20:0,20:0:0:20:707:-63.792,-6.0206,0	1/1:42:0,42:0:0:42:1481:-132.6,-12.6433,0	1/1:28:0,28:0:0:28:1004:-90.3839,-8.42884,0	1/1:35:0,34:0:0:34:1194:-107.09,-10.235,0	0/1:81:47,34:47:1646:34:1220:-85.6134,0,-123.74	0/1:29:16,13:16:538:13:460:-32.9049,0,-39.9847	1/1:55:0,55:0:0:55:1951:-175.289,-16.5567,0	1/1:78:0,77:0:0:77:2754:-246.008,-23.1793,0	0/1:76:39,37:39:1365:37:1324:-96.2228,0,-100.187	1/1:109:0,109:0:0:109:3894:-349.764,-32.8123,0	0/1:5:3,2:3:108:2:72:-5.30917,0,-8.57002	1/1:31:0,31:0:0:31:1103:-99.4608,-9.33193,0	1/1:41:0,41:0:0:41:1476:-131.774,-12.3422,0	0/1:10:6,4:6:210:4:144:-10.2706,0,-16.1546	0/1:40:31,9:31:1112:9:320:-17.0678,0,-88.2784	0/1:35:19,16:19:669:16:576:-41.4383,0,-49.9453	0/1:4:2,2:2:72:2:72:-5.60367,0,-5.62609	1/1:10:0,10:0:0:10:347:-31.4873,-3.0103,0	1/1:28:1,26:1:36:26:932:-80.4968,-4.82891,0	0/1:79:42,36:42:1473:36:1262:-89.7083,0,-108.962	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/1:74:37,37:37:1311:37:1328:-97.3008,0,-95.8842	1/1:130:2,128:2:71:128:4600:-406.102,-32.3918,0	0/1:26:13,13:13:444:13:468:-34.5365,0,-32.4487	1/1:26:0,26:0:0:26:916:-82.5051,-7.82678,0	0/1:109:51,58:51:1823:58:2052:-151.603,0,-131.402	1/1:40:0,39:0:0:39:1381:-123.991,-11.7402,0	0/1:28:13,15:13:461:15:540:-40.497,0,-33.3547	1/1:22:0,22:0:0:22:773:-69.8148,-6.62266,0	1/1:52:0,51:0:0:51:1828:-164.33,-15.3525,0	0/1:9:6,3:6:205:3:104:-6.97152,0,-16.0673	1/1:59:0,59:0:0:59:2099:-188.817,-17.7608,0	1/1:43:1,42:1:36:42:1483:-129.955,-9.35112,0	1/1:81:0,81:0:0:81:2912:-261.174,-24.3834,0	0/1:69:36,33:36:1294:33:1188:-86.135,0,-93.8668	1/1:58:0,58:0:0:58:2067:-186.053,-17.4597,0	0/1:36:17,19:17:610:19:684:-50.9454,0,-44.3737	0/1:21:9,12:9:319:12:428:-32.505,0,-22.7076	0/1:45:19,26:19:683:26:928:-70.1309,0,-48.2122	1/1:57:0,56:0:0:56:2012:-180.671,-16.8577,0	1/1:104:0,103:0:0:103:3675:-329.694,-31.0061,0	0/1:53:31,22:31:1094:22:788:-55.0608,0,-82.7622	1/1:36:0,36:0:0:36:1287:-115.747,-10.8371,0	1/1:36:0,36:0:0:36:1282:-114.595,-10.8371,0	0/1:83:42,41:42:1479:41:1446:-105.04,0,-108.34	1/1:34:0,34:0:0:34:1216:-109.593,-10.235,0	0/1:44:26,17:26:875:17:612:-41.7494,0,-64.8274	1/1:34:0,34:0:0:34:1220:-109.919,-10.235,0	1/1:10:0,10:0:0:10:360:-32.6906,-3.0103,0	0/1:65:38,27:38:1322:27:963:-67.2684,0,-99.6227	0/1:20:9,11:9:319:11:396:-29.8324,0,-22.9991	1/1:54:0,54:0:0:54:1922:-172.726,-16.2556,0	1/1:45:0,45:0:0:45:1592:-143.06,-13.5464,0
chr11	24169449	.	A	G	175186	PASS	AB=0.508002;ABP=5.44291;AC=146;AF=0.784946;AN=186;AO=8167;CIGAR=1X;DP=10336;DPB=10336;DPRA=0;EPP=17495.1;EPPR=4686.89;GTI=1;LEN=1;MEANALT=1.04301;MQM=50.8708;MQMR=59.9543;NS=93;NUMALT=1;ODDS=0.502859;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=292055;QR=76714;RO=2165;RPL=8139;RPP=17495.1;RPPR=4686.89;RPR=28;RUN=1;SAF=8167;SAP=17737.4;SAR=0;SRF=2165;SRP=4704.25;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51:0:0:51:1836:-164.77,-15.3525,0	0/1:112:47,65:47:1654:65:2336:-176.21,0,-115.428	1/1:161:0,161:0:0:161:5760:-516.457,-48.4658,0	0/1:196:102,94:102:3649:94:3358:-239.107,0,-269.566	1/1:69:0,69:0:0:69:2484:-223.081,-20.7711,0	1/1:72:0,72:0:0:72:2584:-230.543,-21.6742,0	1/1:253:0,252:0:0:252:9016:-805.864,-75.8596,0	1/1:114:1,113:1:36:113:4041:-359.092,-30.7191,0	0/1:114:50,64:50:1773:64:2300:-171.982,0,-125.534	1/1:162:0,162:0:0:162:5800:-518.555,-48.7669,0	1/1:68:0,68:0:0:68:2436:-218.328,-20.47,0	0/1:81:41,40:41:1457:40:1427:-104.027,0,-107.041	0/1:65:34,31:34:1224:31:1101:-79.6074,0,-90.9001	1/1:81:0,81:0:0:81:2889:-258.609,-24.3834,0	0/1:65:26,39:26:921:39:1400:-106.344,0,-63.6383	1/1:58:0,58:0:0:58:2077:-186.074,-17.4597,0	1/1:81:0,81:0:0:81:2908:-261.07,-24.3834,0	0/1:63:40,23:40:1410:23:828:-55.5291,0,-108.227	0/1:50:24,26:24:864:26:936:-69.1131,0,-63.0311	0/1:302:142,160:142:5009:160:5729:-421.516,0,-360.045	1/1:187:0,187:0:0:187:6619:-592.86,-56.2926,0	0/1:118:77,41:77:2715:41:1458:-94.7533,0,-209.069	0/1:150:58,92:58:2054:92:3300:-249.689,0,-139.973	1/1:193:1,192:1:36:192:6887:-614.552,-54.5005,0	1/1:147:0,146:0:0:146:5216:-467.499,-43.9504,0	0/1:322:152,170:152:5407:170:6057:-443.894,0,-389.826	1/1:130:1,129:1:36:129:4625:-410.232,-35.5356,0	1/1:35:0,35:0:0:35:1241:-111.178,-10.5361,0	1/1:257:0,257:0:0:257:9173:-817.94,-77.3647,0	0/1:139:80,59:80:2834:59:2120:-148.49,0,-213.453	1/1:117:1,116:1:36:116:4142:-367.629,-31.6222,0	0/1:9:3,6:3:108:6:201:-15.6614,0,-7.3659	1/1:23:2,21:2:72:21:752:-61.0026,-0.0869676,0	.:.:.:.:.:.:.:.	1/1:8:0,8:0:0:8:288:-26.2166,-2.40824,0	1/1:11:0,11:0:0:11:396:-35.8515,-3.31133,0	0/1:208:98,110:98:3486:110:3934:-288.992,0,-251.335	0/1:230:114,116:114:4056:116:4155:-302.081,0,-295.99	1/1:91:0,91:0:0:91:3249:-291.124,-27.3937,0	1/1:2:0,2:0:0:2:72:-6.62799,-0.60206,0	1/1:154:0,154:0:0:154:5540:-496.716,-46.3586,0	1/1:47:2,45:2:72:45:1597:-136.434,-7.31169,0	1/1:176:0,176:0:0:176:6293:-564.741,-52.9813,0	1/1:80:1,79:1:36:79:2816:-249.029,-20.4841,0	1/1:71:0,71:0:0:71:2509:-224.453,-21.3731,0	0/1:105:52,53:52:1838:53:1896:-138.603,0,-133.77	0/1:145:81,64:81:2803:64:2281:-160.956,0,-208.852	1/1:168:0,168:0:0:168:5970:-533.501,-50.573,0	1/1:160:0,160:0:0:160:5737:-512.268,-48.1648,0	0/1:110:48,62:48:1705:62:2228:-166.726,0,-120.621	1/1:249:0,249:0:0:249:8862:-791.509,-74.9565,0	0/1:4:1,3:1:36:3:108:-8.83803,0,-2.39415	1/1:158:0,158:0:0:158:5641:-505.436,-47.5627,0	1/1:83:1,82:1:36:82:2944:-260.127,-21.3872,0	0/1:29:10,19:10:360:19:684:-52.9265,0,-24.0144	0/1:142:72,69:72:2565:69:2449:-177.073,0,-188.292	0/1:85:38,46:38:1334:46:1652:-121.976,0,-94.7109	0/1:19:11,8:11:381:8:288:-20.4367,0,-28.9011	1/1:23:0,23:0:0:23:828:-74.4962,-6.92369,0	1/1:91:0,91:0:0:91:3234:-289.453,-27.3937,0	0/1:129:67,62:67:2392:62:2220:-159.212,0,-176.705	0/1:6:2,4:2:72:4:140:-11.1113,0,-5.03054	0/1:176:98,78:98:3490:78:2789:-195.994,0,-261.326	1/1:242:1,241:1:36:241:8612:-766.62,-69.251,0	0/1:90:45,45:45:1620:45:1620:-118.63,0,-118.84	1/1:71:0,71:0:0:71:2537:-227.448,-21.3731,0	0/1:220:107,113:107:3746:113:4056:-296.494,0,-271.109	1/1:139:2,137:2:72:137:4904:-431.525,-35.0064,0	0/1:31:16,15:16:568:15:536:-39.1248,0,-42.1153	1/1:107:0,107:0:0:107:3841:-344.243,-32.2102,0	1/1:86:0,86:0:0:86:3082:-275.263,-25.8886,0	0/1:25:10,15:10:356:15:534:-40.3492,0,-24.8555	1/1:204:1,203:1:36:203:7270:-648.15,-57.8118,0	1/1:67:0,67:0:0:67:2383:-214.176,-20.169,0	1/1:203:0,203:0:0:203:7263:-651.256,-61.1091,0	0/1:150:72,78:72:2538:78:2804:-206.167,0,-183.515	1/1:63:0,63:0:0:63:2241:-200.867,-18.9649,0	0/1:58:21,37:21:737:37:1332:-102.239,0,-49.1909	0/1:15:10,5:10:330:5:180:-12.0024,0,-25.5019	0/1:111:55,56:55:1908:56:2012:-146.949,0,-138.576	1/1:130:0,130:0:0:130:4658:-417.626,-39.1339,0	1/1:277:0,277:0:0:277:9895:-885.572,-83.3853,0	0/1:124:55,69:55:1976:69:2450:-182.537,0,-140.787	1/1:46:1,45:1:36:45:1620:-141.808,-10.2491,0	1/1:94:0,94:0:0:94:3368:-302.293,-28.2968,0	0/1:135:71,64:71:2520:64:2296:-163.264,0,-186.411	1/1:54:0,54:0:0:54:1918:-172.353,-16.2556,0	0/1:81:40,41:40:1436:41:1464:-107.047,0,-105.154	1/1:98:0,98:0:0:98:3528:-316.219,-29.5009,0	1/1:36:0,36:0:0:36:1281:-115.312,-10.8371,0	0/1:98:38,60:38:1349:60:2143:-162.632,0,-92.1992	0/1:62:42,20:42:1493:20:720:-45.5291,0,-115.999	1/1:106:0,106:0:0:106:3804:-339.916,-31.9092,0	1/1:108:0,108:0:0:108:3866:-345.735,-32.5112,0
chr11	24169537	.	AGAGG	AGAGC,CGAGC	209266	PASS	AB=0.495716,0.497984;ABP=3.64292,3.15039;AC=149,39;AF=0.792553,0.207447;AN=188;AO=7652,1982;CIGAR=4M1X,1X3M1X;DP=9699;DPB=9698.6;DPRA=0,0.980292;EPP=16593.1,4289.51;EPPR=0;GTI=0;LEN=1,5;MEANALT=2.03191,2.60976;MQM=59.9262,59.5348;MQMR=0;NS=94;NUMALT=2;ODDS=1.50887;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=272708,70117;QR=0;RO=0;RPL=7652,1982;RPP=16619.1,4306.87;RPPR=0;RPR=0,0;RUN=1,1;SAF=3,2;SAP=16593.1,4289.51;SAR=7649,1980;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43,0:0:0:43,0:1544,0:-139.252,-12.9443,0,-139.252,-12.9443,-139.252	1/2:116:0,50,65:0:0:50,65:1792,2289:-332.495,-186.338,-171.287,-146.24,0,-126.673	1/1:103:0,102,0:0:0:102,0:3638,0:-327.262,-30.7051,0,-327.262,-30.7051,-327.262	1/2:177:0,94,83:0:0:94,83:3368,2938:-514.348,-239.665,-211.368,-275.039,0,-250.054	1/1:97:0,94,0:0:0:94,0:3350,0:-301.354,-28.2968,0,-301.354,-28.2968,-301.354	1/1:64:0,64,0:0:0:64,0:2281,0:-205.526,-19.2659,0,-205.526,-19.2659,-205.526	1/1:220:0,218,0:0:0:218,0:7730,0:-695.429,-65.6245,0,-695.429,-65.6245,-695.429	1/1:124:0,123,0:0:0:123,0:4379,0:-393.921,-37.0267,0,-393.921,-37.0267,-393.921	1/2:100:0,53,47:0:0:53,47:1893,1621:-286.014,-131.672,-115.718,-154.692,0,-140.543	1/1:158:0,158,0:0:0:158,0:5631,0:-506.822,-47.5627,0,-506.822,-47.5627,-506.822	1/1:76:0,76,0:0:0:76,0:2713,0:-244.412,-22.8783,0,-244.412,-22.8783,-244.412	1/2:71:0,34,37:0:0:34,37:1212,1320:-206.261,-107.466,-97.2314,-98.7916,0,-87.6535	1/2:83:0,31,52:0:0:31,52:1116,1800:-237.583,-146.518,-137.186,-91.4198,0,-75.7662	1/1:69:0,68,0:0:0:68,0:2420,0:-217.694,-20.47,0,-217.694,-20.47,-217.694	1/2:63:0,32,31:0:0:32,31:1152,1113:-185.145,-91.1498,-81.5168,-94.3548,0,-85.0229	1/1:52:0,50,0:0:0:50,0:1796,0:-161.601,-15.0515,0,-161.601,-15.0515,-161.601	1/1:65:0,65,0:0:0:65,0:2324,0:-209.42,-19.567,0,-209.42,-19.567,-209.42	1/2:73:0,28,45:0:0:28,45:1004,1593:-211.957,-130.067,-121.638,-82.247,0,-68.7007	1/2:66:0,32,33:0:0:32,33:1152,1182:-189.723,-95.7221,-86.0892,-94.1088,0,-84.1748	1/2:165:0,78,87:0:0:78,87:2785,3096:-479.72,-252.667,-229.187,-227.409,0,-201.219	1/1:177:0,177,0:0:0:177,0:6305,0:-567.541,-53.2823,0,-567.541,-53.2823,-567.541	1/2:98:0,38,60:0:0:38,60:1353,2113:-282.489,-172.214,-160.774,-110.629,0,-92.5674	1/2:71:0,39,29:0:0:39,29:1374,1033:-196.119,-84.2556,-72.5155,-111.921,0,-103.191	1/1:131:0,131,0:0:0:131,0:4663,0:-419.824,-39.4349,0,-419.824,-39.4349,-419.824	1/1:94:0,90,4:0:0:90,4:3180,138:-286.069,-27.0927,0,-274.859,-15.537,-273.654	1/2:286:0,136,148:0:0:136,148:4842,5258:-823.148,-428.51,-387.57,-394.707,0,-350.154	1/1:141:0,140,0:0:0:140,0:4990,0:-448.865,-42.1442,0,-448.865,-42.1442,-448.865	1/1:38:0,38,0:0:0:38,0:1364,0:-123.016,-11.4391,0,-123.016,-11.4391,-123.016	1/1:313:0,312,0:0:0:312,0:11103,0:-998.798,-93.9214,0,-998.798,-93.9214,-998.798	1/2:127:0,87,38:0:0:87,38:3085,1356:-361.803,-110.528,-84.3386,-251.271,0,-239.832	1/1:102:0,101,0:0:0:101,0:3624,0:-326.141,-30.404,0,-326.141,-30.404,-326.141	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:228:0,122,101:0:0:122,101:4354,3568:-645.517,-290.564,-253.839,-354.993,0,-324.589	1/2:235:0,117,117:0:0:117,117:4140,4134:-673.842,-336.635,-301.414,-337.201,0,-301.98	1/1:89:0,88,0:0:0:88,0:3160,0:-284.324,-26.4906,0,-284.324,-26.4906,-284.324	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:136:0,132,0:0:0:132,0:4717,0:-424.342,-39.736,0,-424.342,-39.736,-424.342	1/1:65:0,64,0:0:0:64,0:2281,0:-205.23,-19.2659,0,-205.23,-19.2659,-205.23	1/1:125:0,124,0:0:0:124,0:4434,0:-398.878,-37.3277,0,-398.878,-37.3277,-398.878	1/1:104:0,103,0:0:0:103,0:3666,0:-329.782,-31.0061,0,-329.782,-31.0061,-329.782	1/1:68:0,68,0:0:0:68,0:2387,0:-214.997,-20.47,0,-214.997,-20.47,-214.997	1/2:97:0,43,53:0:0:43,53:1540,1894:-280.023,-154.432,-141.488,-125.599,0,-109.644	1/2:124:0,59,65:0:0:59,65:2059,2284:-353.622,-186.158,-168.397,-167.814,0,-148.247	1/1:196:0,194,0:0:0:194,0:6930,0:-623.462,-58.3998,0,-623.462,-58.3998,-623.462	1/1:150:0,149,0:0:0:149,0:5303,0:-477.043,-44.8535,0,-477.043,-44.8535,-477.043	1/2:105:0,54,50:0:0:54,50:1914,1776:-300.628,-144.707,-128.452,-155.916,0,-140.864	1/1:174:0,172,0:0:0:172,0:6157,0:-553.865,-51.7772,0,-553.865,-51.7772,-553.865	1/2:7:0,3,4:0:0:3,4:108,139:-20.4642,-11.6466,-10.7435,-9.17208,0,-7.96796	1/1:111:0,110,0:0:0:110,0:3929,0:-353.456,-33.1133,0,-353.456,-33.1133,-353.456	1/1:76:0,75,0:0:0:75,0:2673,0:-240.454,-22.5773,0,-240.454,-22.5773,-240.454	1/2:20:0,7,13:0:0:7,13:252,464:-58.7464,-38.1834,-36.0762,-20.9217,0,-17.0084	1/2:106:0,58,47:0:0:58,47:2084,1646:-303.916,-133.904,-116.445,-170.006,0,-155.858	1/2:81:0,36,45:0:0:36,45:1296,1576:-234.334,-12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chr11	24238696	.	TAA	TGA,TG	138504	PASS	AB=0.482782,0.51418;ABP=10.6376,8.18313;AC=145,41;AF=0.77957,0.22043;AN=186;AO=4860,1531;CIGAR=1M1X1M,1M1D1X;DP=6408;DPB=5897.33;DPRA=69.6413,1.15689;EPP=10435.1,3310.19;EPPR=5.18177;GTI=1;LEN=1,2;MEANALT=1.63043,2.15556;MQM=59.9245,56.8014;MQMR=60;NS=93;NUMALT=2;ODDS=1.85772;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=173129,54618;QR=28;RO=1;RPL=4846,1529;RPP=10435.1,3310.19;RPPR=5.18177;RPR=14,2;RUN=1,1;SAF=0,0;SAP=10556.4,3327.53;SAR=4860,1531;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15,0:0:0:15,0:528,0:-47.8514,-4.51545,0,-47.8514,-4.51545,-47.8514	1/2:48:0,25,23:0:0:25,23:896,819:-139.84,-66.762,-59.2363,-73.4346,0,-66.5109	1/1:119:0,119,0:0:0:119,0:4255,0:-383.129,-35.8226,0,-383.129,-35.8226,-383.129	1/2:173:0,78,93:0:0:78,93:2788,3340:-497.967,-270.699,-247.219,-227.343,0,-199.347	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:7:0,7,0:0:0:7,0:243,0:-22.2075,-2.10721,0,-22.2075,-2.10721,-22.2075	1/1:65:0,65,0:0:0:65,0:2293,0:-206.626,-19.567,0,-206.626,-19.567,-206.626	1/1:56:0,56,0:0:0:56,0:2004,0:-180.634,-16.8577,0,-180.634,-16.8577,-180.634	1/2:82:0,34,48:0:0:34,48:1198,1721:-237.949,-140.414,-130.179,-97.889,0,-83.4395	1/1:79:0,79,0:0:0:79,0:2831,0:-255.028,-23.7814,0,-255.028,-23.7814,-255.028	1/1:63:0,63,0:0:0:63,0:2243,0:-202.133,-18.9649,0,-202.133,-18.9649,-202.133	1/2:66:0,28,37:0:0:28,37:1000,1302:-186.869,-105.337,-96.908,-81.5269,0,-70.3888	1/2:66:0,30,36:0:0:30,36:1053,1268:-189.142,-103.446,-94.4148,-86.0477,0,-75.2106	1/1:75:0,75,0:0:0:75,0:2688,0:-242.12,-22.5773,0,-242.12,-22.5773,-242.12	1/2:45:0,23,22:0:0:23,22:819,792:-131.713,-64.963,-58.0393,-67.1079,0,-60.4852	1/1:41:0,41,0:0:0:41,0:1414,0:-127.552,-12.3422,0,-127.552,-12.3422,-127.552	1/1:56:0,56,0:0:0:56,0:2008,0:-180.993,-16.8577,0,-180.993,-16.8577,-180.993	1/2:34:0,15,19:0:0:15,19:531,672:-98.3117,-55.0589,-50.5434,-43.6065,0,-37.8869	1/2:20:0,9,11:0:0:9,11:320,387:-57.9248,-31.8453,-29.1361,-26.4331,0,-23.1218	1/2:75:0,39,36:0:0:39,36:1392,1292:-219.126,-105.645,-93.905,-113.839,0,-103.002	1/1:126:0,126,0:0:0:126,0:4427,0:-398.345,-37.9298,0,-398.345,-37.9298,-398.345	1/2:50:0,14,36:0:0:14,36:500,1288:-146.014,-105.25,-101.035,-41.1218,0,-30.2847	1/2:76:0,37,39:0:0:37,39:1324,1388:-221.246,-113.279,-102.141,-108.324,0,-96.5838	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9144,-8.72987,0,-93.9144,-8.72987,-93.9144	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:236:0,119,116:0:0:119,116:4216,4121:-678.617,-335.45,-299.628,-343.31,0,-308.39	1/1:174:0,174,0:0:0:174,0:6218,0:-559.715,-52.3792,0,-559.715,-52.3792,-559.715	1/1:17:0,17,0:0:0:17,0:606,0:-54.8711,-5.11751,0,-54.8711,-5.11751,-54.8711	1/1:175:0,175,0:0:0:175,0:6249,0:-562.495,-52.6803,0,-562.495,-52.6803,-562.495	1/2:52:0,15,37:0:0:15,37:531,1324:-151.467,-108.215,-103.7,-43.6065,0,-32.4683	1/1:63:0,63,0:0:0:63,0:2251,0:-202.853,-18.9649,0,-202.853,-18.9649,-202.853	2/2:1:0,0,1:0:0:0,1:0,36:-3.59727,-3.59727,-3.59727,-0.30103,-0.30103,0	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:158:0,77,80:0:0:77,80:2733,2849:-454.657,-231.978,-208.799,-222.723,0,-198.641	1/2:107:0,44,63:0:0:44,63:1576,2251:-312.148,-183.619,-170.374,-128.886,0,-109.921	1/1:46:1,44,1:1:28:44,1:1558,36:-137.671,-11.0665,0,-135.035,-10.2689,-136.951	.:.:.:.:.:.:.:.	1/1:97:0,96,1:0:0:96,1:3420,36:-307.656,-28.8989,0,-304.719,-25.6026,-304.418	1/1:37:0,35,0:0:0:35,0:1241,0:-111.633,-10.5361,0,-111.633,-10.5361,-111.633	1/1:95:0,95,0:0:0:95,0:3358,0:-302.437,-28.5979,0,-302.437,-28.5979,-302.437	1/1:36:0,36,0:0:0:36,0:1296,0:-116.944,-10.8371,0,-116.944,-10.8371,-116.944	1/1:34:0,33,0:0:0:33,0:1168,0:-105.172,-9.93399,0,-105.172,-9.93399,-105.172	1/2:69:0,21,48:0:0:21,48:744,1715:-200.294,-139.686,-133.365,-60.9627,0,-46.5133	1/2:36:0,21,15:0:0:21,15:752,536:-105.373,-44.0462,-37.7246,-61.6846,0,-57.1692	1/1:107:0,107,0:0:0:107,0:3819,0:-343.908,-32.2102,0,-343.908,-32.2102,-343.908	1/1:73:0,73,0:0:0:73,0:2612,0:-235.328,-21.9752,0,-235.328,-21.9752,-235.328	1/2:137:0,66,70:0:0:66,70:2360,2476:-393.738,-201.303,-181.435,-192.431,0,-171.359	1/1:66:0,66,0:0:0:66,0:2335,0:-210.408,-19.868,0,-210.408,-19.868,-210.408	1/2:8:0,3,5:0:0:3,5:108,164:-22.3731,-13.5486,-12.6455,-9.17208,0,-7.66693	1/1:84:0,84,0:0:0:84,0:2996,0:-269.865,-25.2865,0,-269.865,-25.2865,-269.865	1/1:47:0,47,0:0:0:47,0:1688,0:-152.207,-14.1484,0,-152.207,-14.1484,-152.207	1/2:13:0,5,8:0:0:5,8:176,288:-38.1768,-23.8518,-22.3467,-14.6799,0,-12.2716	1/2:85:0,50,35:0:0:50,35:1761,1256:-245.984,-102.622,-87.5706,-143.717,0,-133.181	1/2:20:0,9,11:0:0:9,11:320,396:-58.7334,-32.6576,-29.9484,-26.4331,0,-23.1218	1/2:18:0,8,10:0:0:8,10:288,360:-53.0861,-29.5861,-27.1778,-23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chr11	24297399	.	G	A	62877.2	PASS	AB=0.351573;ABP=447.148;AC=148;AF=0.787234;AN=188;AO=3077;CIGAR=1X;DP=4593;DPB=4593;DPRA=0;EPP=6675.95;EPPR=3281.93;GTI=8;LEN=1;MEANALT=1.05319;MQM=59.9828;MQMR=59.9967;NS=94;NUMALT=1;ODDS=0.929982;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109530;QR=54005;RO=1510;RPL=3077;RPP=6684.63;RPPR=3281.93;RPR=0;RUN=1;SAF=1;SAP=6675.95;SAR=3076;SRF=0;SRP=3281.93;SRR=1510;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:38:20,18:20:716:18:648:-47.2127,0,-53.3286	1/1:82:0,82:0:0:82:2905:-261.686,-24.6845,0	0/1:125:106,19:106:3808:19:680:-23.9004,0,-305.288	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:36:0,36:0:0:36:1281:-115.591,-10.8371,0	1/1:56:1,55:1:36:55:1959:-172.987,-13.2594,0	0/1:78:49,29:49:1745:29:1032:-69.7131,0,-133.852	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	0/1:82:40,42:40:1424:42:1508:-111.33,0,-103.773	0/1:62:33,29:33:1188:29:1044:-75.5933,0,-88.5647	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:57:30,27:30:1064:27:972:-70.6392,0,-78.913	1/1:44:1,43:1:36:43:1536:-134.935,-9.64705,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:27:13,14:13:468:14:500:-37.2084,0,-34.3318	0/1:29:11,18:11:396:18:639:-49.109,0,-27.2529	0/1:83:61,22:61:2180:22:773:-44.904,0,-171.481	1/1:59:0,58:0:0:58:2072:-186.538,-17.4597,0	0/1:34:26,8:26:936:8:288:-16.0324,0,-74.3244	0/1:58:37,21:37:1319:21:747:-50.0946,0,-101.551	1/1:45:0,45:0:0:45:1592:-143.569,-13.5464,0	1/1:47:0,47:0:0:47:1656:-149.325,-14.1484,0	0/1:132:103,29:103:3688:29:1044:-54.5388,0,-292.387	1/1:121:1,119:1:36:119:4256:-379.695,-32.8102,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:77:0,77:0:0:77:2741:-246.931,-23.1793,0	0/1:46:26,20:26:932:20:716:-50.9203,0,-70.3515	1/1:24:0,24:0:0:24:841:-76.0064,-7.22472,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:155:76,79:76:2728:79:2828:-208.099,0,-199.1	0/1:53:37,16:37:1320:16:572:-35.8588,0,-103.147	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:82:0,82:0:0:82:2857:-257.363,-24.6845,0	1/1:54:0,54:0:0:54:1917:-172.805,-16.2556,0	1/1:103:0,103:0:0:103:3601:-324.295,-31.0061,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:43:0,42:0:0:42:1504:-135.441,-12.6433,0	0/1:81:48,33:48:1716:33:1169:-81.1319,0,-130.342	0/1:88:68,20:68:2436:20:720:-38.6381,0,-193.005	1/1:50:0,50:0:0:50:1712:-154.357,-15.0515,0	1/1:33:0,33:0:0:33:1173:-105.876,-9.93399,0	0/1:73:51,22:51:1819:22:792:-49.6305,0,-142.015	1/1:57:0,57:0:0:57:2016:-181.711,-17.1587,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:11:6,5:6:208:5:180:-13.2407,0,-15.7478	0/1:126:94,31:94:3351:31:1093:-60.8345,0,-263.967	0/1:31:24,7:24:856:7:252:-13.697,0,-68.0292	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:52:24,28:24:864:28:996:-74.3013,0,-62.429	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:42:30,12:30:1076:12:428:-26.2155,0,-84.5096	1/1:56:0,56:0:0:56:1985:-178.923,-16.8577,0	0/1:44:25,19:25:896:19:676:-47.9227,0,-67.715	1/1:21:0,21:0:0:21:733:-66.2897,-6.32163,0	0/1:102:77,25:77:2760:25:881:-48.8983,0,-217.936	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:39:22,17:22:788:17:612:-43.6733,0,-59.5046	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:44:0,42:0:0:42:1500:-134.935,-12.6433,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:32:0,32:0:0:32:1133:-102.277,-9.63296,0	1/1:47:0,47:0:0:47:1676:-151.127,-14.1484,0	1/1:70:0,70:0:0:70:2508:-225.972,-21.0721,0	0/1:94:70,24:70:2489:24:849:-48.4315,0,-195.965	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:64:45,19:45:1608:19:665:-40.9069,0,-125.744	0/1:19:13,6:13:464:6:216:-14.0709,0,-36.3779	0/1:68:48,20:48:1720:20:693:-42.2196,0,-134.615	1/1:33:0,33:0:0:33:1155:-104.253,-9.93399,0	1/1:101:3,98:3:108:98:3508:-305.855,-20.3289,0	0/1:38:26,12:26:928:12:432:-27.7821,0,-72.3991	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:30:0,30:0:0:30:1056:-95.3488,-9.0309,0	0/1:81:37,44:37:1315:44:1574:-117.408,0,-94.2676	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:31:14,17:14:504:17:604:-45.3587,0,-36.3662	1/1:50:0,50:0:0:50:1784:-160.843,-15.0515,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:76:42,34:42:1496:34:1216:-86.8683,0,-112.056	0/1:59:46,13:46:1647:13:460:-23.9746,0,-130.757	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	1/1:114:0,114:0:0:114:4096:-368.824,-34.3174,0
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chr11	24453555	.	G	C	22260.7	PASS	AB=0.523406;ABP=14.8018;AC=45;AF=0.239362;AN=188;AO=1347;CIGAR=1X;DP=5321;DPB=5321;DPRA=1.17835;EPP=2927.98;EPPR=8599.88;GTI=1;LEN=1;MEANALT=1.08696;MQM=59.9443;MQMR=59.9882;NS=94;NUMALT=1;ODDS=0.356774;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47448;QR=140733;RO=3967;RPL=1347;RPP=2927.98;RPPR=8617.24;RPR=0;RUN=1;SAF=1347;SAP=2927.98;SAR=0;SRF=3965;SRP=8599.88;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:416:0:0:0,-3.61236,-37.7716	0/1:17:10,7:10:360:7:235:-16.3604,0,-27.6268	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/1:106:65,41:65:2300:41:1432:-97.2611,0,-175.35	0/0:8:7,1:7:252:1:21:0,-0.308294,-20.929	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:105:105,0:105:3735:0:0:0,-31.6081,-336.352	0/0:72:72,0:72:2532:0:0:0,-21.6742,-228.131	0/1:30:8,22:8:288:22:779:-61.4012,0,-17.2365	0/0:92:92,0:92:3238:0:0:0,-27.6948,-290.623	0/0:62:60,2:60:2098:2:72:0,-11.8271,-182.25	0/1:73:37,35:37:1311:35:1248:-90.5757,0,-96.257	0/1:92:52,40:52:1838:40:1400:-98.5996,0,-138.004	0/0:133:133,0:133:4713:0:0:0,-40.037,-424.33	0/1:63:32,31:32:1148:31:1101:-80.4348,0,-84.6649	0/0:49:49,0:49:1736:0:0:0,-14.7505,-156.522	0/0:59:59,0:59:2086:0:0:0,-17.7608,-188.009	0/1:80:35,45:35:1243:45:1596:-119.848,0,-88.0915	0/1:50:27,23:27:972:23:797:-56.9936,0,-72.7464	0/1:47:21,26:21:756:26:909:-67.9748,0,-54.2188	0/0:39:39,0:39:1382:0:0:0,-11.7402,-124.677	1/1:39:3,36:3:108:36:1292:-106.509,-1.665,0	0/1:57:27,30:27:968:30:1049:-77.5592,0,-70.2787	0/0:82:82,0:82:2906:0:0:0,-24.6845,-261.773	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:158:63,94:63:2235:94:3295:-249.15,0,-153.792	0/0:40:39,0:39:1387:0:0:0,-11.7402,-124.768	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:53:25,28:25:892:28:992:-73.6383,0,-64.6451	0/0:81:81,0:81:2878:0:0:0,-24.3834,-259.254	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:180:87,92:87:3094:92:3224:-236.13,0,-224.444	0/1:92:32,60:32:1131:60:2116:-163.012,0,-74.403	0/0:92:92,0:92:3240:0:0:0,-27.6948,-291.823	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:59:58,0:58:2067:0:0:0,-17.4597,-185.941	0/0:66:66,0:66:2320:0:0:0,-19.868,-209.059	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:51:26,25:26:911:25:888:-64.8865,0,-66.9524	0/1:28:13,15:13:464:15:517:-38.4262,0,-33.6687	0/0:91:91,0:91:3239:0:0:0,-27.3937,-291.732	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/1:105:45,60:45:1600:60:2133:-160.628,0,-112.682	0/0:89:89,0:89:3191:0:0:0,-26.7917,-287.412	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.689	0/0:16:16,0:16:559:0:0:0,-4.81648,-50.6376	0/1:9:7,2:7:239:2:72:-4.12745,0,-19.1334	0/1:65:43,22:43:1531:22:771:-50.1434,0,-118.515	0/1:24:12,12:12:428:12:424:-31.2717,0,-31.6317	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:6:5,1:5:171:1:36:-1.79209,0,-13.9193	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:132:59,73:59:2102:73:2543:-189.385,0,-149.712	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:94:41,53:41:1464:53:1875:-140.731,0,-103.759	0/0:82:81,1:81:2885:1:36:0,-21.0862,-256.287	0/1:72:33,39:33:1176:39:1383:-103.092,0,-84.4736	0/0:18:18,0:18:620:0:0:0,-5.41854,-56.1201	0/1:57:40,17:40:1390:17:590:-36.2655,0,-108.234	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:20:11,9:11:392:9:312:-22.3948,0,-29.5995	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:131:131,0:131:4662:0:0:0,-39.4349,-419.743	0/1:21:12,8:12:428:8:271:-18.3414,0,-32.4786	0/0:73:72,1:72:2549:1:36:0,-18.3769,-226.058	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:91:91,0:91:3198:0:0:0,-27.3937,-288.044	0/1:68:26,42:26:932:42:1483:-113.294,0,-63.7288	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/1:81:30,51:30:1068:51:1793:-137.267,0,-72.0486	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	0/1:62:33,29:33:1180:29:1035:-74.7992,0,-87.8442	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:72:71,1:71:2515:1:36:0,-18.0759,-223.004	0/1:101:57,44:57:1969:44:1545:-108.922,0,-147.077	0/0:78:77,0:77:2724:0:0:0,-23.1793,-245.046	0/0:99:99,0:99:3491:0:0:0,-29.802,-314.402	0/1:114:53,61:53:1846:61:2172:-161.425,0,-132.099	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/1:83:48,35:48:1700:35:1228:-85.8384,0,-128.301	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:104:38,66:38:1348:66:2336:-179.191,0,-90.3131	0/1:67:21,46:21:743:46:1635:-127.269,0,-47.0243	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:80:80,0:80:2817:0:0:0,-24.0824,-253.77
chr11	24607410	.	T	C	24437.4	PASS	AB=0.527339;ABP=20.7016;AC=39;AF=0.207447;AN=188;AO=1444;CIGAR=1X;DP=7072;DPB=7072;DPRA=1.00438;EPP=3138.62;EPPR=11442.1;GTI=0;LEN=1;MEANALT=1.02273;MQM=59.6939;MQMR=58.5133;NS=94;NUMALT=1;ODDS=4.83085;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51519;QR=201647;RO=5626;RPL=0;RPP=3138.62;RPPR=11442.1;RPR=1444;RUN=1;SAF=0;SAP=3138.62;SAR=1444;SRF=0;SRP=12219.7;SRR=5626;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:83:83,0:83:2969:0:0:0,-24.9855,-266.482	0/1:76:43,33:43:1544:33:1172:-82.9082,0,-116.271	0/0:374:374,0:374:13360:0:0:0,-112.585,-1198.8	0/1:146:58,88:58:2084:88:3133:-238.224,0,-143.857	0/0:89:89,0:89:3185:0:0:0,-26.7917,-286.721	0/0:54:53,1:53:1900:1:36:0,-12.6573,-167.571	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.705	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.565	0/1:87:46,41:46:1637:41:1464:-105.866,0,-121.254	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.22	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3588	0/1:89:48,41:48:1728:41:1460:-104.798,0,-128.995	0/1:40:27,13:27:972:13:464:-30.0563,0,-75.7021	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.544	0/1:44:23,21:23:828:21:756:-55.1219,0,-61.5461	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.515	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1693	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.6282	0/1:21:10,11:10:360:11:392:-29.2969,0,-26.4194	0/1:153:81,72:81:2893:72:2561:-184.596,0,-214.386	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.436	0/1:56:17,39:17:608:39:1385:-108.087,0,-38.1877	0/1:86:39,46:39:1389:46:1636:-121.579,0,-99.1281	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.351	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.237	0/1:177:74,103:74:2641:103:3664:-276.681,0,-184.41	0/0:245:245,0:245:8746:0:0:0,-73.7523,-786.308	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6924	0/0:171:171,0:171:6136:0:0:0,-51.4761,-552.097	0/1:104:39,65:39:1404:65:2322:-177.411,0,-95.3373	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.421	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.63176	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0277	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3124	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3124	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6446	0/1:120:61,59:61:2192:59:2101:-153.234,0,-161.248	0/1:84:37,47:37:1317:47:1680:-126.2,0,-93.5262	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.216	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59783	0/0:114:114,0:114:4081:0:0:0,-34.3174,-367.299	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5112	0/0:135:135,0:135:4829:0:0:0,-40.639,-434.176	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2639	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2635	0/1:108:43,65:43:1544:65:2321:-175.988,0,-106.362	0/1:109:43,66:43:1548:66:2364:-180.202,0,-106.698	0/0:151:150,1:150:5384:1:36:0,-41.8573,-480.363	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.484	0/1:110:42,68:42:1504:68:2428:-185.663,0,-102.469	0/0:108:106,2:106:3800:2:72:0,-25.6745,-335.226	0/1:7:3,4:3:108:4:144:-11.0976,0,-7.96671	0/0:133:133,0:133:4773:0:0:0,-40.037,-429.538	0/0:49:49,0:49:1764:0:0:0,-14.7505,-158.894	0/1:7:3,4:3:108:4:144:-11.2048,0,-7.96671	0/1:104:45,59:45:1620:59:2108:-158.652,0,-114.419	0/1:32:14,18:14:500:18:644:-48.6576,0,-35.6531	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6027	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.998	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.219	0/1:67:27,40:27:972:40:1440:-109.729,0,-67.618	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.56877	0/1:117:46,71:46:1644:71:2537:-193.329,0,-112.962	0/0:130:129,1:129:4625:1:36:0,-35.5356,-412.289	0/1:90:69,21:69:2461:21:748:-40.5349,0,-194.447	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.598	0/1:78:37,41:37:1328:41:1450:-106.992,0,-96.3277	0/0:150:148,2:148:5313:2:72:0,-38.3178,-471.149	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0837	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.408	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.2446	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9381	0/0:127:127,0:127:4526:0:0:0,-38.2308,-407.229	0/0:81:81,0:81:2897:0:0:0,-24.3834,-260.674	0/0:106:106,0:106:3781:0:0:0,-31.9092,-339.416	0/1:142:78,64:78:2793:64:2292:-163.789,0,-208.594	0/0:200:200,0:200:7169:0:0:0,-60.206,-644.87	0/1:67:21,46:21:752:46:1643:-127.959,0,-47.7442	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.55	0/1:102:53,49:53:1900:49:1737:-125.906,0,-140.547	0/0:93:93,0:93:3340:0:0:0,-27.9958,-300.467	0/0:208:208,0:208:7460:0:0:0,-62.6142,-671.042	0/1:30:14,16:14:504:16:566:-42.2112,0,-36.6623	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.228	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6454	0/1:69:40,29:40:1440:29:1040:-73.1326,0,-109.057	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4544	0/1:32:16,16:16:576:16:571:-42.0007,0,-42.5261	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.059	0/0:27:26,0:26:936:0:0:0,-7.82678,-84.0224	0/1:72:44,28:44:1580:28:1000:-68.6412,0,-120.676	0/1:40:16,24:16:576:24:856:-65.3147,0,-40.1277	0/0:79:79,0:79:2832:0:0:0,-23.7814,-254.671	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.558
chr11	24636013	.	C	T	21802.8	PASS	AB=0.503072;ABP=3.22378;AC=41;AF=0.218085;AN=188;AO=1317;CIGAR=1X;DP=6301;DPB=6301;DPRA=1.06475;EPP=2862.84;EPPR=10808.3;GTI=2;LEN=1;MEANALT=1.04545;MQM=60;MQMR=59.995;NS=94;NUMALT=1;ODDS=0.241957;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46870;QR=176650;RO=4980;RPL=1317;RPP=2862.84;RPPR=10816.9;RPR=0;RUN=1;SAF=1317;SAP=2862.84;SAR=0;SRF=4979;SRP=10808.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:72:46,26:46:1639:26:924:-61.8035,0,-126.124	0/0:92:92,0:92:3275:0:0:0,-27.6948,-294.967	0/1:126:57,69:57:2027:69:2463:-183.994,0,-144.772	0/0:37:37,0:37:1298:0:0:0,-11.1381,-117.117	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:102:102,0:102:3621:0:0:0,-30.7051,-326.096	0/0:150:149,1:149:5264:1:36:0,-41.5562,-470.301	0/1:61:24,36:24:864:36:1261:-95.369,0,-59.6609	0/0:80:80,0:80:2857:0:0:0,-24.0824,-257.366	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/1:42:20,22:20:707:22:779:-57.7888,0,-51.3113	0/1:33:17,16:17:585:16:563:-41.0652,0,-43.0379	0/0:59:59,0:59:2065:0:0:0,-17.7608,-186.117	0/1:32:20,12:20:701:12:432:-29.5882,0,-53.7788	0/0:24:24,0:24:836:0:0:0,-7.22472,-75.5409	0/0:45:45,0:45:1596:0:0:0,-13.5463,-143.93	0/1:22:12,10:12:428:10:343:-24.5779,0,-32.2361	0/1:20:7,13:7:252:13:460:-35.7148,0,-17.0084	0/1:103:50,53:50:1785:53:1904:-140.632,0,-129.925	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/1:69:19,50:19:684:50:1772:-138.99,0,-41.1193	0/1:38:22,16:22:779:16:572:-40.3743,0,-58.9929	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919	0/0:83:82,0:82:2907:0:0:0,-24.6845,-261.502	0/1:220:121,99:121:4340:99:3548:-253.302,0,-324.548	0/0:159:159,0:159:5649:0:0:0,-47.8638,-508.531	0/0:27:27,0:27:941:0:0:0,-8.12781,-85.0017	0/0:241:241,0:241:8552:0:0:0,-72.5482,-769.684	0/1:100:51,49:51:1800:49:1760:-128.581,0,-132.176	0/0:84:84,0:84:2986:0:0:0,-25.2865,-268.972	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:119:59,60:59:2082:60:2144:-157.405,0,-151.827	0/1:143:60,83:60:2136:83:2936:-221.427,0,-149.461	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:121:121,0:121:4290:0:0:0,-36.4246,-386.278	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:75:75,0:75:2655:0:0:0,-22.5772,-239.194	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/0:40:40,0:40:1402:0:0:0,-12.0412,-126.476	0/1:57:27,30:27:957:30:1080:-80.3545,0,-69.2852	0/1:58:34,24:34:1216:24:847:-59.089,0,-92.2868	0/0:195:195,0:195:6949:0:0:0,-58.7008,-625.475	0/0:98:98,0:98:3459:0:0:0,-29.5009,-311.521	0/1:109:61,48:61:2161:48:1713:-121.641,0,-161.943	0/0:101:101,0:101:3592:0:0:0,-30.404,-323.486	0/1:5:4,1:4:129:1:36:-2.09312,0,-10.4225	0/0:93:93,0:93:3321:0:0:0,-27.9958,-299.107	0/0:29:29,0:29:1021:0:0:0,-8.72987,-92.2003	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	0/1:85:40,45:40:1417:45:1592:-117.981,0,-102.238	0/1:29:19,10:19:676:10:360:-24.0144,0,-52.4381	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:25:25,0:25:880:0:0:0,-7.52575,-79.5177	0/0:80:80,0:80:2838:0:0:0,-24.0824,-255.648	0/1:88:44,44:44:1571:44:1559:-114.11,0,-115.19	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/1:133:76,57:76:2691:57:2033:-143.205,0,-202.396	0/0:157:155,2:155:5486:2:72:0,-40.425,-487.029	0/1:68:36,32:36:1284:32:1144:-82.7995,0,-95.3934	0/0:62:61,0:61:2135:0:0:0,-18.3628,-192.056	0/1:84:48,36:48:1707:36:1273:-89.5844,0,-128.629	0/0:73:71,2:71:2510:2:72:0,-15.1385,-219.316	0/1:14:5,9:5:171:9:320:-24.9279,0,-11.511	0/0:71:71,0:71:2510:0:0:0,-21.3731,-226.15	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:102:102,0:102:3587:0:0:0,-30.7051,-323.037	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:131:131,0:131:4644:0:0:0,-39.4349,-418.122	0/1:72:34,38:34:1207:38:1368:-101.747,0,-87.2611	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/1:102:51,51:51:1793:51:1812:-132.656,0,-130.942	0/1:10:6,4:6:207:4:144:-10.3033,0,-15.9566	0/1:112:54,57:54:1928:57:2038:-149.918,0,-140.023	0/0:73:73,0:73:2553:0:0:0,-21.9752,-230.016	0/0:158:158,0:158:5620:0:0:0,-47.5627,-505.921	0/1:76:30,46:30:1063:46:1614:-122.669,0,-73.1025	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0316	0/0:46:46,0:46:1635:0:0:0,-13.8474,-147.438	0/1:92:48,44:48:1691:44:1562:-113.175,0,-124.781	0/0:15:15,0:15:518:0:0:0,-4.51545,-46.9455	0/1:44:23,21:23:828:21:756:-55.1219,0,-61.5988	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/0:25:25,0:25:872:0:0:0,-7.52575,-78.7936	0/1:70:33,37:33:1172:37:1294:-95.6874,0,-84.7154	0/1:54:16,38:16:557:38:1348:-105.365,0,-34.1999	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/0:63:62,1:62:2197:1:36:0,-15.3666,-194.396
chr11	24647927	.	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chr11	24647958	.	C	T	61803.3	PASS	AB=0.514126;ABP=12.0288;AC=40;AF=0.215054;AN=186;AO=2692;CIGAR=1X;DP=11834;DPB=11834;DPRA=1.11359;EPP=5831.26;EPPR=19291.8;GTI=0;LEN=1;MEANALT=1.03922;MQM=59.9796;MQMR=59.9641;NS=93;NUMALT=1;ODDS=0.0544369;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=96210;QR=325174;RO=9137;RPL=1390;RPP=9.25691;RPPR=937.546;RPR=1302;RUN=1;SAF=1392;SAP=9.83769;SAR=1300;SRF=5624;SRP=1062.09;SRR=3513;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:74:73,0:73:2608:0:0:0,-21.9752,-234.609	0/1:147:80,67:80:2855:67:2412:-173.084,0,-212.934	0/0:186:186,0:186:6628:0:0:0,-55.9916,-596.6	0/1:184:87,97:87:3077:97:3484:-258.375,0,-221.77	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/0:74:74,0:74:2631:0:0:0,-22.2762,-237.037	0/0:133:133,0:133:4732:0:0:0,-40.037,-426.041	0/0:157:157,0:157:5596:0:0:0,-47.2617,-503.763	0/1:135:71,64:71:2507:64:2287:-165.452,0,-185.242	0/0:112:112,0:112:3996:0:0:0,-33.7154,-359.828	0/0:144:144,0:144:5113:0:0:0,-43.3483,-460.313	0/1:243:97,146:97:3422:146:5207:-395.461,0,-235.043	0/1:177:74,103:74:2647:103:3677:-277.85,0,-185.194	0/0:169:169,0:169:5972:0:0:0,-50.8741,-537.58	0/1:158:92,66:92:3299:66:2360:-165.096,0,-249.557	0/0:158:158,0:158:5610:0:0:0,-47.5627,-505.021	0/0:142:142,0:142:5059:0:0:0,-42.7463,-455.399	0/1:98:71,27:71:2520:27:968:-57.9364,0,-197.548	0/1:71:32,39:32:1144:39:1404:-105.286,0,-81.8964	0/1:176:83,93:83:2963:93:3312:-245.314,0,-213.922	0/0:249:246,2:246:8720:2:72:0,-68.1785,-777.883	0/1:61:9,52:9:315:52:1864:-149.677,0,-10.3244	0/1:103:51,52:51:1832:52:1863:-136.943,0,-134.154	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.913	0/0:90:90,0:90:3184:0:0:0,-27.0927,-286.781	0/1:279:144,135:144:5126:135:4835:-351.316,0,-377.495	0/0:228:227,1:227:8093:1:32:0,-65.4355,-725.189	0/0:87:87,0:87:3098:0:0:0,-26.1896,-279.047	0/0:209:209,0:209:7405:0:0:0,-62.9153,-666.486	0/1:111:63,48:63:2252:48:1708:-120.591,0,-169.529	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.059	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3836	0/1:455:230,225:230:8175:225:8031:-585.841,0,-598.798	0/1:67:31,36:31:1094:36:1277:-95.0514,0,-78.5987	0/0:112:112,0:112:3987:0:0:0,-33.7154,-358.207	.:.:.:.:.:.:.:.	0/0:143:143,0:143:5088:0:0:0,-43.0473,-458.057	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/0:206:206,0:206:7362:0:0:0,-62.0122,-662.628	0/0:159:159,0:159:5659:0:0:0,-47.8638,-509.431	0/0:178:178,0:178:6348:0:0:0,-53.5833,-571.412	0/1:86:35,51:35:1240:51:1809:-137.201,0,-86.0159	0/1:143:55,88:55:1963:88:3132:-239.057,0,-133.897	0/0:165:162,3:162:5763:3:104:0,-39.9671,-509.055	0/0:115:115,0:115:4079:0:0:0,-34.6184,-367.299	0/1:143:83,60:83:2971:60:2156:-151.26,0,-224.575	0/0:135:135,0:135:4815:0:0:0,-40.639,-433.507	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:146:146,0:146:5210:0:0:0,-43.9504,-468.982	0/0:46:46,0:46:1627:0:0:0,-13.8474,-146.718	0/1:9:4,5:4:144:5:170:-12.9242,0,-10.6043	0/1:139:86,53:86:3058:53:1882:-127.813,0,-233.605	0/1:59:30,29:30:1076:29:1036:-75.7931,0,-79.3921	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.898	0/1:239:104,135:104:3716:135:4832:-363.089,0,-262.696	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:113:54,59:54:1917:59:2112:-156.333,0,-138.789	0/0:173:170,3:170:6054:3:108:0,-42.003,-534.879	0/1:93:48,45:48:1716:45:1601:-116.383,0,-126.73	0/0:61:60,1:60:2111:1:36:0,-14.7646,-186.658	0/1:170:80,90:80:2812:90:3232:-239.926,0,-202.012	0/0:113:111,1:111:3949:1:36:0,-30.4069,-352.073	0/1:86:47,39:47:1679:39:1396:-100.051,0,-125.508	0/0:97:97,0:97:3457:0:0:0,-29.1999,-311.342	0/0:192:192,0:192:6868:0:0:0,-57.7978,-618.19	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	0/0:77:76,1:76:2683:1:36:0,-19.581,-238.115	0/0:99:99,0:99:3502:0:0:0,-29.802,-315.39	0/0:234:233,0:233:8317:0:0:0,-70.14,-748.157	0/1:158:92,66:92:3273:66:2376:-166.535,0,-247.227	0/0:106:106,0:106:3756:0:0:0,-31.9092,-338.238	0/1:95:55,40:55:1938:40:1418:-99.318,0,-146.097	0/1:22:5,17:5:176:17:608:-48.4294,0,-9.56236	0/1:161:66,95:66:2372:95:3412:-258.828,0,-165.272	0/0:104:103,1:103:3651:1:36:0,-27.7088,-325.196	0/0:145:144,1:144:5138:1:36:0,-40.0511,-458.964	0/1:200:87,113:87:3098:113:4017:-301.511,0,-218.841	0/0:170:170,0:170:6057:0:0:0,-51.1751,-545.229	0/0:173:173,0:173:6159:0:0:0,-52.0782,-554.382	0/1:324:173,151:173:6111:151:5396:-388.237,0,-452.559	0/0:83:83,0:83:2939:0:0:0,-24.9855,-264.743	0/1:134:71,63:71:2510:63:2243:-161.795,0,-185.814	0/0:153:153,0:153:5447:0:0:0,-46.0576,-490.359	0/0:114:114,0:114:4070:0:0:0,-34.3174,-366.45	0/1:164:65,99:65:2323:99:3534:-268.9,0,-159.961	0/1:136:47,89:47:1670:89:3191:-246.472,0,-109.646	0/0:138:137,0:137:4870:0:0:0,-41.2411,-438.093	0/0:273:271,2:271:9660:2:72:0,-75.3445,-862.516
chr11	24719027	.	GAT	GTT,TAG	108968	PASS	AB=0.449979,0.546587;ABP=53.6273,46.9143;AC=146,40;AF=0.784946,0.215054;AN=186;AO=3797,1283;CIGAR=1M1X1M,1X1M1X;DP=5106;DPB=5106.33;DPRA=14.0055,1.22607;EPP=8248.09,2789.01;EPPR=16.0391;GTI=1;LEN=1,3;MEANALT=1.61538,2.125;MQM=59.9876,59.9057;MQMR=60;NS=93;NUMALT=2;ODDS=2.03206;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,72;PQR=0;PRO=0;QA=135481,45136;QR=160;RO=6;RPL=3797,1283;RPP=8248.09,2789.01;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=3797,1283;SAP=8248.09,2789.01;SAR=0,0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/2:54:0,23,31:0:0:23,31:824,1062:-153.76,-86.5521,-79.6284,-67.5596,0,-58.2277	1/1:38:0,38,0:0:0:38,0:1347,0:-121.529,-11.4391,0,-121.529,-11.4391,-121.529	1/2:107:0,45,62:0:0:45,62:1604,2181:-308.639,-177.89,-164.344,-131.104,0,-112.44	1/1:49:0,49,0:0:0:49,0:1728,0:-155.802,-14.7505,0,-155.802,-14.7505,-155.802	1/1:45:1,44,0:1:21:44,0:1571,0:-139.581,-11.4464,0,-139.882,-13.2453,-141.468	1/1:61:0,61,0:0:0:61,0:2192,0:-197.545,-18.3628,0,-197.545,-18.3628,-197.545	1/1:81:0,81,0:0:0:81,0:2896,0:-260.876,-24.3834,0,-260.876,-24.3834,-260.876	1/2:50:0,32,18:0:0:32,18:1137,637:-144.888,-52.2387,-42.6057,-93.004,0,-87.5855	1/1:47:0,47,0:0:0:47,0:1677,0:-151.216,-14.1484,0,-151.216,-14.1484,-151.216	1/1:28:0,28,0:0:0:28,0:996,0:-89.9549,-8.42884,0,-89.9549,-8.42884,-89.9549	1/2:48:0,24,24:0:0:24,24:864,843:-139.465,-68.9629,-61.7382,-70.8578,0,-63.6331	1/2:35:0,18,17:0:0:18,17:648,596:-101.728,-48.8496,-43.4311,-53.2333,0,-48.1158	1/1:50:0,50,0:0:0:50,0:1784,0:-160.843,-15.0515,0,-160.843,-15.0515,-160.843	1/2:49:0,21,28:0:0:21,28:756,1006:-144.113,-82.4274,-76.1057,-62.0456,0,-53.6168	1/1:26:0,24,0:0:0:24,0:856,0:-77.0983,-7.22472,0,-77.0983,-7.22472,-77.0983	1/1:36:0,36,0:0:0:36,0:1278,0:-115.322,-10.8371,0,-115.322,-10.8371,-115.322	1/2:59:0,31,28:0:0:31,28:1108,1001:-172.318,-81.9767,-72.6447,-90.6991,0,-82.2702	1/2:28:0,15,13:0:0:15,13:540,454:-81.3452,-37.2782,-32.7628,-44.4211,0,-40.5077	1/2:133:0,61,72:0:0:61,72:2191,2504:-382.671,-203.932,-185.57,-179.093,0,-157.419	1/1:65:0,65,0:0:0:65,0:2306,0:-207.798,-19.567,0,-207.798,-19.567,-207.798	1/2:63:0,21,42:0:0:21,42:752,1482:-182.358,-121.03,-114.708,-61.6846,0,-49.0414	1/2:20:0,13,7:0:0:13,7:468,252:-59.1082,-20.9217,-17.0084,-38.5463,0,-36.439	1/1:80:0,79,1:0:0:79,1:2831,36:-254.668,-23.7814,0,-251.731,-20.4841,-251.43	1/1:39:0,39,0:0:0:39,0:1396,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/2:202:0,95,106:0:0:95,106:3384,3722:-578.714,-302.892,-274.294,-275.817,0,-243.907	1/1:107:0,107,0:0:0:107,0:3848,0:-346.514,-32.2102,0,-346.514,-32.2102,-346.514	1/1:20:0,19,0:0:0:19,0:676,0:-60.9127,-5.71957,0,-60.9127,-5.71957,-60.9127	1/1:116:0,114,0:0:0:114,0:4048,0:-364.149,-34.3174,0,-364.149,-34.3174,-364.149	1/2:75:0,37,36:0:0:37,36:1313,1269:-210.293,-103.316,-92.1775,-106.972,0,-96.1349	1/1:63:0,63,0:0:0:63,0:2240,0:-201.864,-18.9649,0,-201.864,-18.9649,-201.864	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	.:.:.:.:.:.:.:.	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:157:0,75,82:0:0:75,82:2679,2859:-451.284,-232.859,-210.282,-218.778,0,-194.094	1/2:71:0,21,50:0:0:21,50:752,1761:-205.047,-143.719,-137.397,-61.6846,0,-46.6331	1/1:49:0,49,0:0:0:49,0:1756,0:-158.324,-14.7505,0,-158.324,-14.7505,-158.324	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:63:0,63,0:0:0:63,0:2264,0:-204.022,-18.9649,0,-204.022,-18.9649,-204.022	1/1:36:0,36,0:0:0:36,0:1269,0:-114.511,-10.8371,0,-114.511,-10.8371,-114.511	1/1:148:1,147,0:1:36:147,0:5261,0:-470.026,-40.9542,0,-470.327,-44.2514,-473.265	1/1:35:0,34,0:0:0:34,0:1220,0:-109.747,-10.235,0,-109.747,-10.235,-109.747	1/1:41:0,41,0:0:0:41,0:1460,0:-131.696,-12.3422,0,-131.696,-12.3422,-131.696	1/2:40:0,14,26:0:0:14,26:504,923:-116.686,-75.5603,-71.3459,-41.4837,0,-33.6569	1/2:48:0,20,28:0:0:20,28:707,973:-137.031,-79.4476,-73.427,-57.934,0,-49.5051	1/1:114:0,114,0:0:0:114,0:4058,0:-365.408,-34.3174,0,-365.408,-34.3174,-365.408	1/1:56:0,56,0:0:0:56,0:1989,0:-179.282,-16.8577,0,-179.282,-16.8577,-179.282	1/2:82:0,43,39:0:0:43,39:1540,1396:-239.789,-114.198,-101.254,-125.949,0,-114.209	1/1:114:1,112,0:1:25:112,0:3997,0:-357.365,-31.8214,0,-357.666,-33.7154,-359.614	1/2:5:0,2,2:0:0:2,2:72,72:-11.7497,-5.87483,-5.27277,-5.87483,0,-5.27277	1/1:91:0,91,0:0:0:91,0:3253,0:-292.989,-27.3937,0,-292.989,-27.3937,-292.989	1/1:14:0,14,0:0:0:14,0:500,0:-45.3362,-4.21442,0,-45.3362,-4.21442,-45.3362	1/2:14:0,3,11:0:0:3,11:108,393:-41.2123,-32.3995,-31.4964,-9.17208,0,-5.86075	1/2:31:0,10,21:0:0:10,21:352,711:-86.6393,-57.9789,-54.9686,-29.0079,0,-22.6863	1/2:18:0,6,12:0:0:6,12:216,424:-52.4913,-34.8645,-33.0583,-17.9843,0,-14.372	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/2:106:0,42,61:0:0:42,61:1485,2133:-294.505,-173.557,-160.913,-120.983,0,-102.62	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:97:0,42,55:0:0:42,55:1508,1920:-279.533,-156.516,-143.873,-123.371,0,-106.815	1/1:120:0,120,0:0:0:120,0:4246,0:-382.05,-36.1236,0,-382.05,-36.1236,-382.05	1/2:35:0,21,14:0:0:21,14:752,492:-101.728,-40.3976,-34.0759,-61.6846,0,-57.4702	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.22472,-77.7218	1/2:86:0,43,43:0:0:43,43:1540,1487:-246.773,-121.176,-108.232,-125.949,0,-113.004	1/1:37:0,36,1:0:0:36,1:1296,36:-116.584,-10.8371,0,-113.647,-7.53984,-113.346	1/2:11:0,6,5:0:0:6,5:216,180:-32.6714,-15.0469,-13.2407,-17.9843,0,-16.4792	1/1:27:0,27,0:0:0:27,0:949,0:-85.7228,-8.12781,0,-85.7228,-8.12781,-85.7228	1/1:64:0,64,0:0:0:64,0:2281,0:-205.552,-19.2659,0,-205.552,-19.2659,-205.552	1/2:17:0,5,12:0:0:5,12:180,417:-48.9402,-34.2494,-32.7443,-15.0469,0,-11.4346	1/1:80:1,79,0:1:21:79,0:2812,0:-251.207,-21.9825,0,-251.508,-23.7814,-253.095	1/1:38:0,38,0:0:0:38,0:1364,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/1:76:0,74,0:0:0:74,0:2638,0:-237.369,-22.2762,0,-237.369,-22.2762,-237.369	1/2:116:0,51,65:0:0:51,65:1828,2284:-335.317,-186.224,-170.871,-149.448,0,-129.881	1/1:36:1,35,0:1:36:35,0:1248,0:-109.027,-7.23881,0,-109.328,-10.5361,-112.265	1/2:77:0,30,47:0:0:30,47:1072,1654:-222.404,-134.997,-125.966,-87.7616,0,-73.6131	1/1:4:0,3,0:0:0:3,0:108,0:-9.71534,-0.90309,0,-9.71534,-0.90309,-9.71534	1/2:82:0,34,48:0:0:34,48:1210,1708:-238.17,-139.555,-129.32,-98.9709,0,-84.5215	1/1:52:0,52,0:0:0:52,0:1856,0:-167.32,-15.6536,0,-167.32,-15.6536,-167.32	1/1:151:0,151,0:0:0:151,0:5381,0:-484.422,-45.4555,0,-484.422,-45.4555,-484.422	1/2:68:0,33,35:0:0:33,35:1169,1254:-197.841,-102.616,-92.6817,-95.5813,0,-85.0452	1/1:29:0,29,0:0:0:29,0:1018,0:-91.9304,-8.72987,0,-91.9304,-8.72987,-91.9304	1/1:48:0,47,0:0:0:47,0:1688,0:-151.847,-14.1484,0,-151.847,-14.1484,-151.847	1/2:83:0,41,42:0:0:41,42:1467,1490:-241.378,-121.751,-109.409,-119.983,0,-107.34	1/1:25:1,24,0:1:21:24,0:856,0:-75.2612,-5.4258,0,-75.5622,-7.22472,-77.1453	1/2:49:0,24,25:0:0:24,25:856,885:-142.224,-72.4425,-65.2178,-70.1364,0,-62.6106	1/1:39:0,39,0:0:0:39,0:1396,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/1:30:0,30,0:0:0:30,0:1051,0:-94.8996,-9.0309,0,-94.8996,-9.0309,-94.8996	1/2:67:0,32,35:0:0:32,35:1139,1255:-195.548,-102.719,-93.0864,-93.1854,0,-82.6494	1/2:46:0,14,31:0:0:14,31:500,1096:-130.093,-89.3261,-85.1117,-40.8366,0,-31.5047	1/1:33:0,32,0:0:0:32,0:1140,0:-102.549,-9.63296,0,-102.549,-9.63296,-102.549	1/1:54:0,54,0:0:0:54,0:1919,0:-172.986,-16.2556,0,-172.986,-16.2556,-172.986
chr11	24730517	.	T	C	177421	PASS	AB=0.504028;ABP=3.57012;AC=140;AF=0.744681;AN=188;AO=7460;CIGAR=1X;DP=13430;DPB=13430;DPRA=0;EPP=16158.8;EPPR=12918.9;GTI=15;LEN=1;MEANALT=1.07447;MQM=59.8397;MQMR=59.9388;NS=94;NUMALT=1;ODDS=1.20408;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=265621;QR=213109;RO=5960;RPL=6587;RPP=9506.78;RPPR=10014.6;RPR=873;RUN=1;SAF=6592;SAP=9540.08;SAR=868;SRF=5604;SRP=10037.5;SRR=356;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:84:0,81:0:0:81:2858:-257.084,-24.3834,0	0/1:53:26,27:26:932:27:962:-70.9415,0,-68.2443	1/1:223:0,223:0:0:223:7935:-714.156,-67.1297,0	0/1:131:69,62:69:2472:62:2215:-160.179,0,-183.287	1/1:89:1,88:1:36:88:3145:-279.677,-23.1934,0	1/1:19:0,19:0:0:19:676:-61.1662,-5.71957,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:205:2,203:2:72:203:7246:-645.351,-54.8744,0	0/1:86:38,48:38:1340:48:1715:-128.734,0,-94.0703	1/1:85:0,85:0:0:85:3030:-272.93,-25.5876,0	1/1:52:0,52:0:0:52:1840:-165.878,-15.6536,0	0/1:74:27,47:27:947:47:1669:-128.218,0,-63.2675	0/1:55:21,34:21:748:34:1204:-92.1045,0,-51.0886	1/1:86:0,86:0:0:86:3058:-275.402,-25.8886,0	0/1:41:24,17:24:860:17:612:-43.0689,0,-65.3796	1/1:85:0,85:0:0:85:2998:-270.049,-25.5876,0	1/1:40:0,40:0:0:40:1436:-128.893,-12.0412,0	0/1:23:11,12:11:383:12:428:-31.9317,0,-27.8796	0/1:103:83,20:83:2976:20:711:-33.3086,0,-237.063	0/1:153:72,81:72:2567:81:2901:-215.22,0,-184.443	1/1:121:0,121:0:0:121:4282:-385.469,-36.4246,0	0/1:146:101,45:101:3636:45:1616:-101.78,0,-283.493	0/1:146:71,75:71:2552:75:2660:-195.16,0,-185.893	1/1:76:3,73:3:108:73:2571:-221.561,-12.8031,0	1/1:137:0,137:0:0:137:4904:-441.487,-41.2411,0	0/1:434:212,222:212:7591:222:7917:-581.91,0,-552.499	1/1:260:0,260:0:0:260:9236:-831.151,-78.2678,0	1/1:29:0,29:0:0:29:1031:-93.1026,-8.72987,0	1/1:458:0,458:0:0:458:16372:-1473.15,-137.872,0	0/1:115:47,68:47:1680:68:2436:-184.877,0,-116.869	1/1:139:0,139:0:0:139:4941:-444.811,-41.8432,0	0/0:521:516,5:516:18468:5:180:0,-140.285,-1645.14	1/1:26:2,24:2:72:24:847:-69.707,-0.990058,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:13:1,12:1:36:12:428:-35.2605,-0.315115,0	1/1:18:1,17:1:36:17:599:-50.6398,-1.82027,0	0/1:338:159,179:159:5716:179:6404:-474.697,0,-412.806	0/1:82:36,46:36:1296:46:1605:-120.051,0,-92.2595	1/1:44:0,44:0:0:44:1576:-142.121,-13.2453,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:102:0,102:0:0:102:3623:-326.148,-30.7051,0	1/1:35:0,35:0:0:35:1254:-112.793,-10.5361,0	1/1:154:0,154:0:0:154:5481:-493.413,-46.3586,0	1/1:49:1,48:1:36:48:1719:-151.394,-11.1522,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:233:115,118:115:4116:118:4214:-309.3,0,-300.481	0/1:109:45,64:45:1612:64:2240:-169.042,0,-112.558	1/1:153:0,153:0:0:153:5421:-487.243,-46.0576,0	1/1:107:0,107:0:0:107:3803:-342.456,-32.2102,0	0/1:91:49,42:49:1736:42:1500:-107.901,0,-129.128	1/1:249:0,249:0:0:249:8842:-795.674,-74.9565,0	0/0:570:567,3:567:20248:3:108:0,-161.512,-1811.75	1/1:167:1,166:1:36:166:5915:-528.749,-46.6737,0	1/1:108:0,108:0:0:108:3868:-348.315,-32.5112,0	0/0:277:269,7:269:9633:7:239:0,-61.5991,-845.065	0/1:110:57,53:57:2044:53:1877:-135.467,0,-151.115	0/1:71:24,47:24:860:47:1689:-130.924,0,-56.3487	0/0:584:572,12:572:20436:12:432:0,-136.58,-1799.36	1/1:37:0,37:0:0:37:1311:-118.291,-11.1381,0	1/1:65:0,65:0:0:65:2324:-209.416,-19.567,0	0/1:80:29,51:29:1032:51:1828:-140.718,0,-69.1111	0/0:430:425,4:425:15216:4:140:0,-116.435,-1356.23	0/1:235:62,173:62:2224:173:6168:-484.429,0,-129.682	1/1:179:2,174:2:72:174:6205:-551.711,-46.5044,0	0/1:70:21,49:21:756:49:1751:-136.784,0,-47.2951	1/1:76:1,75:1:36:75:2662:-236.227,-19.28,0	0/1:115:65,50:65:2328:50:1788:-126.584,0,-175.161	1/1:196:2,194:2:72:194:6866:-611.144,-52.1652,0	0/0:312:290,22:290:10325:22:792:0,-22.3264,-857.58	1/1:42:0,42:0:0:42:1493:-134.662,-12.6433,0	1/1:144:0,144:0:0:144:5158:-464.359,-43.3483,0	0/0:621:595,25:595:21303:25:885:0,-107.088,-1836.11	1/1:82:0,82:0:0:82:2927:-263.661,-24.6845,0	1/1:132:0,132:0:0:132:4691:-422.294,-39.736,0	1/1:91:0,91:0:0:91:3250:-292.72,-27.3937,0	0/1:137:81,56:81:2892:56:1989:-137.884,0,-219.273	1/1:136:0,136:0:0:136:4828:-434.597,-40.9401,0	0/1:120:61,59:61:2192:59:2108:-153.862,0,-161.422	0/0:746:737,9:737:26365:9:324:0,-195.063,-2341.8	0/1:101:49,52:49:1752:52:1854:-136.732,0,-127.56	1/1:97:0,97:0:0:97:3435:-309.35,-29.1999,0	1/1:185:0,185:0:0:185:6614:-595.321,-55.6906,0	0/1:43:12,31:12:432:31:1104:-86.7263,0,-26.2769	1/1:53:0,53:0:0:53:1904:-171.637,-15.9546,0	1/1:36:0,36:0:0:36:1277:-115.231,-10.8371,0	0/1:109:40,69:40:1432:69:2461:-188.93,0,-96.3653	1/1:13:1,12:1:32:12:432:-36.0219,-0.714077,0	0/1:50:23,27:23:824:27:950:-70.7616,0,-59.4318	1/1:63:0,63:0:0:63:2202:-198.432,-18.9649,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	0/1:254:200,54:200:7084:54:1918:-96.421,0,-561.161	0/1:64:40,24:40:1423:24:857:-58.1686,0,-109.101	1/1:137:1,135:1:36:135:4772:-425.85,-37.7016,0	1/1:94:0,94:0:0:94:3364:-302.97,-28.2968,0
chr11	24730546	.	A	T	145175	PASS	AB=0.499312;ABP=3.03717;AC=46;AF=0.25;AN=184;AO=5948;CIGAR=1X;DP=17910;DPB=17910;DPRA=1.34828;EPP=12918.9;EPPR=25861;GTI=6;LEN=1;MEANALT=1.18;MQM=59.9193;MQMR=59.9267;NS=92;NUMALT=1;ODDS=1.76965;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=212278;QR=426743;RO=11944;RPL=4213;RPP=2244.75;RPPR=948.103;RPR=1735;RUN=1;SAF=4213;SAP=2244.75;SAR=1735;SRF=4827;SRP=956.411;SRR=7117;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.416	0/1:119:64,55:64:2304:55:1965:-141.133,0,-171.798	0/0:86:85,1:85:3029:1:36:0,-22.2903,-269.241	0/1:284:145,139:145:5166:139:4972:-361.932,0,-379.587	0/0:186:183,3:183:6552:3:108:0,-45.9164,-579.687	0/0:66:66,0:66:2345:0:0:0,-19.868,-211.308	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.989	0/0:171:171,0:171:6120:0:0:0,-51.4761,-550.901	0/1:86:58,28:58:2080:28:998:-64.2456,0,-160.954	0/0:144:144,0:144:5118:0:0:0,-43.3483,-460.766	0/0:108:108,0:108:3852:0:0:0,-32.5112,-346.874	0/1:89:40,49:40:1413:49:1737:-129.818,0,-100.673	0/1:68:35,33:35:1252:33:1188:-86.7586,0,-92.515	0/0:172:172,0:172:6128:0:0:0,-51.7772,-551.513	0/1:107:63,44:63:2268:44:1584:-110.641,0,-172.169	0/0:150:150,0:150:5379:0:0:0,-45.1545,-484.24	0/0:75:74,0:74:2660:0:0:0,-22.2762,-239.286	0/1:61:36,25:36:1296:25:900:-62.9582,0,-98.5811	0/1:31:21,10:21:752:10:352:-22.6863,0,-58.6743	0/1:414:223,189:223:7975:189:6767:-484.012,0,-593.39	0/0:255:254,0:254:9100:0:0:0,-76.4616,-818.524	0/1:145:43,102:43:1544:102:3636:-283.795,0,-95.6037	0/1:230:122,108:122:4340:108:3855:-277.823,0,-321.202	0/0:153:151,2:151:5412:2:72:0,-39.2209,-480.373	0/0:231:231,0:231:8280:0:0:0,-69.5379,-745.165	0/1:441:226,215:226:8048:215:7627:-553.652,0,-591.586	0/0:492:492,0:492:17608:0:0:0,-148.107,-1584.27	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:470:470,0:470:16742:0:0:0,-141.484,-1506.42	0/1:220:132,88:132:4720:88:3094:-212.434,0,-358.733	0/0:220:220,0:220:7869:0:0:0,-66.2266,-708.208	1/1:520:7,512:7:252:512:18332:-1626.43,-133.565,0	0/0:30:28,2:28:996:2:72:0,-2.19418,-83.1163	.:.:.:.:.:.:.:.	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/1:340:180,158:180:6401:158:5672:-408.489,0,-474.069	0/1:245:114,131:114:4088:131:4708:-350.103,0,-293.86	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.254	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:615:615,0:615:21952:0:0:0,-185.133,-1973.94	0/0:55:55,0:55:1980:0:0:0,-16.5566,-177.984	0/0:402:402,0:402:14347:0:0:0,-121.014,-1290.94	0/0:138:138,0:138:4926:0:0:0,-41.5421,-443.489	0/0:126:126,0:126:4504:0:0:0,-37.9298,-405.526	0/1:233:120,113:120:4287:113:3999:-289.957,0,-315.867	0/1:114:59,55:59:2107:55:1964:-142.718,0,-155.581	0/0:356:356,0:356:12735:0:0:0,-107.167,-1145.08	0/0:191:191,0:191:6814:0:0:0,-57.4967,-613.333	0/1:241:118,123:118:4223:123:4395:-323.175,0,-307.701	0/0:252:252,0:252:9004:0:0:0,-75.8596,-809.968	1/1:568:2,565:2:72:565:20124:-1803.83,-164.207,0	0/0:160:160,0:160:5735:0:0:0,-48.1648,-516.265	0/0:109:109,0:109:3887:0:0:0,-32.8123,-350.025	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:205:98,107:98:3504:107:3840:-284.081,0,-253.86	0/1:116:74,42:74:2626:42:1499:-100.284,0,-201.668	1/1:587:11,574:11:387:574:20430:-1803,-141.295,0	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:110:108,2:108:3856:2:72:0,-26.2766,-340.395	0/1:176:113,63:113:4027:63:2260:-150.681,0,-309.638	1/1:418:4,413:4:144:413:14695:-1307.7,-112.576,0	0/1:241:177,64:177:6338:64:2296:-134.353,0,-497.671	0/0:353:351,2:351:12521:2:57:0,-100.85,-1121.31	0/1:146:92,54:92:3284:54:1936:-130.544,0,-251.823	0/0:155:154,1:154:5487:1:36:0,-43.0614,-490.359	0/1:230:112,118:112:4020:118:4216:-310.381,0,-292.706	0/0:255:252,3:252:9013:3:108:0,-66.6875,-801.02	0/1:334:39,295:39:1396:295:10552:-849.051,0,-25.3844	0/0:56:56,0:56:2001:0:0:0,-16.8577,-180.362	0/0:145:145,0:145:5187:0:0:0,-43.6493,-466.969	1/1:622:26,596:26:913:596:21224:-1827.03,-104.813,0	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.595	0/0:212:212,0:212:7561:0:0:0,-63.8184,-680.532	0/1:304:134,170:134:4785:170:6077:-455.49,0,-338.977	0/0:161:161,0:161:5780:0:0:0,-48.4658,-520.312	0/1:123:69,54:69:2480:54:1930:-136.946,0,-186.426	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	0/1:251:129,121:129:4620:121:4316:-312.999,0,-340.344	0/0:107:105,0:105:3759:0:0:0,-31.6081,-338.149	0/0:319:319,0:319:11363:0:0:0,-96.0286,-1022.55	0/1:136:77,59:77:2755:59:2124:-150.488,0,-207.251	0/0:147:147,0:147:5268:0:0:0,-44.2514,-474.255	0/0:154:154,0:154:5519:0:0:0,-46.3586,-496.834	0/1:276:168,108:168:5970:108:3865:-264.959,0,-454.324	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:77:38,39:38:1349:39:1385:-101.768,0,-98.529	0/0:82:81,0:81:2912:0:0:0,-24.3834,-261.955	0/0:81:79,0:79:2818:0:0:0,-23.7814,-253.499	0/1:325:98,226:98:3494:226:8088:-630.041,0,-216.759	0/1:130:52,78:52:1848:78:2791:-212.296,0,-127.452	0/0:227:226,1:226:8076:1:36:0,-64.7355,-723.082	0/0:219:217,2:217:7751:2:72:0,-59.0888,-690.778
chr11	24780752	.	GACCC	AACCT,GACCT	197719	PASS	AB=0.49829,0.496239;ABP=3.12167,3.54933;AC=149,39;AF=0.792553,0.207447;AN=188;AO=7466,2187;CIGAR=1X3M1X,4M1X;DP=9715;DPB=9716.4;DPRA=0,1.24736;EPP=16215.2,4743.34;EPPR=0;GTI=1;LEN=5,1;MEANALT=2.05319,2.6;MQM=58.9159,59.8025;MQMR=0;NS=94;NUMALT=2;ODDS=0.179335;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=54,54;PQR=70;PRO=2;QA=254270,78131;QR=0;RO=0;RPL=0,0;RPP=16215.2,4752.02;RPPR=0;RPR=7466,2187;RUN=1,1;SAF=7466,2186;SAP=16215.2,4743.34;SAR=0,1;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28,0:0:0:28,0:941,0:-84.9881,-8.42884,0,-84.9881,-8.42884,-84.9881	1/2:105:0,75,30:0:0:75,30:2509,1076:-290.777,-87.9921,-65.4148,-203.136,0,-194.105	1/1:125:0,124,0:0:0:124,0:4219,0:-378.277,-37.3277,0,-378.277,-37.3277,-378.277	1/2:191:0,102,89:0:0:102,89:3455,3181:-539.315,-259.723,-229.018,-279.94,0,-253.149	1/1:50:0,50,0:0:0:50,0:1717,0:-153.74,-15.0515,0,-153.74,-15.0515,-153.74	1/1:52:0,52,0:0:0:52,0:1779,0:-160.282,-15.6536,0,-160.282,-15.6536,-160.282	1/1:84:0,82,2:0:0:82,2:2821,72:-253.623,-24.6845,0,-247.748,-18.4498,-247.146	1/1:156:0,156,0:0:0:156,0:5303,0:-477.301,-46.9607,0,-477.301,-46.9607,-477.301	1/2:114:0,68,44:0:0:68,44:2295,1546:-311.585,-125.906,-105.436,-185.765,0,-172.52	1/1:113:0,110,0:0:0:110,0:3728,0:-334.832,-33.1133,0,-334.832,-33.1133,-334.832	1/1:107:0,104,2:0:0:104,2:3550,68:-319.066,-31.3071,0,-313.551,-25.8046,-312.948	1/2:97:0,44,52:0:0:44,52:1493,1864:-273.114,-152.061,-138.815,-121.081,0,-105.427	1/2:106:0,55,51:0:0:55,51:1865,1828:-300.644,-149.448,-132.892,-151.545,0,-136.192	1/1:174:0,173,0:0:0:173,0:5956,0:-535.008,-52.0782,0,-535.008,-52.0782,-535.008	1/2:78:0,36,42:0:0:36,42:1232,1508:-223.352,-123.367,-112.53,-100.335,0,-87.6914	1/1:82:0,81,0:0:0:81,0:2766,0:-248.706,-24.3834,0,-248.706,-24.3834,-248.706	1/1:187:0,186,0:0:0:186,0:6108,0:-548.186,-55.9916,0,-548.186,-55.9916,-548.186	1/2:90:0,38,51:0:0:38,51:1306,1823:-254.565,-148.532,-137.093,-106.023,0,-90.6705	1/2:57:0,32,25:0:0:32,25:1056,900:-159.109,-73.7668,-64.1339,-85.689,0,-78.1633	1/2:155:0,95,59:0:0:95,59:3230,2124:-435.274,-173.367,-144.769,-261.959,0,-244.198	1/1:92:0,92,0:0:0:92,0:3096,0:-278.614,-27.6948,0,-278.614,-27.6948,-278.614	1/2:109:0,34,74:0:0:34,74:1158,2599:-305.512,-211.615,-201.38,-93.9877,0,-71.7115	1/2:84:0,41,43:0:0:41,43:1386,1540:-238.217,-125.931,-113.589,-112.634,0,-99.6895	1/1:93:0,92,0:0:0:92,0:3148,0:-281.952,-27.6948,0,-281.952,-27.6948,-281.952	1/1:81:0,80,1:0:0:80,1:2746,36:-246.963,-24.0824,0,-244.025,-21.1751,-243.724	1/2:283:0,132,149:0:0:132,149:4490,5332:-798.955,-434.836,-395.1,-364.157,0,-319.304	1/1:174:0,174,0:0:0:174,0:5968,0:-536.099,-52.3792,0,-536.099,-52.3792,-536.099	1/1:44:0,44,0:0:0:44,0:1519,0:-136.993,-13.2453,0,-136.993,-13.2453,-136.993	1/1:208:0,206,1:0:0:206,1:7163,36:-644.139,-62.0122,0,-641.201,-58.9998,-640.9	1/2:196:0,119,75:0:0:119,75:4003,2659:-540.187,-216.61,-180.787,-323.584,0,-301.007	1/1:128:0,128,0:0:0:128,0:4378,0:-393.92,-38.5318,0,-393.92,-38.5318,-393.92	1/1:8:0,8,0:0:0:8,0:266,0:-24.1932,-2.40824,0,-24.1932,-2.40824,-24.1932	1/1:14:0,14,0:0:0:14,0:470,0:-42.614,-4.21442,0,-42.614,-4.21442,-42.614	1/1:1:0,1,0:0:0:1,0:33,0:-3.29913,-0.30103,0,-3.29913,-0.30103,-3.29913	1/1:14:0,14,0:0:0:14,0:463,0:-41.9821,-4.21442,0,-41.9821,-4.21442,-41.9821	1/1:8:0,8,0:0:0:8,0:263,0:-23.921,-2.40824,0,-23.921,-2.40824,-23.921	1/2:216:0,109,107:0:0:109,107:3721,3832:-614.469,-312.749,-279.937,-302.01,0,-269.8	1/2:187:0,77,108:0:0:77,108:2624,3843:-526.149,-313.285,-290.106,-212.964,0,-180.452	1/1:90:0,90,0:0:0:90,0:3010,0:-270.568,-27.0927,0,-270.568,-27.0927,-270.568	1/1:1:0,1,0:0:0:1,0:35,0:-3.49863,-0.30103,0,-3.49863,-0.30103,-3.49863	1/1:192:0,192,0:0:0:192,0:6539,0:-586.42,-57.7978,0,-586.42,-57.7978,-586.42	1/1:37:0,37,0:0:0:37,0:1234,0:-111.346,-11.1381,0,-111.346,-11.1381,-111.346	1/1:137:0,134,0:0:0:134,0:4504,0:-404.898,-40.338,0,-404.898,-40.338,-404.898	1/1:111:0,110,0:0:0:110,0:3736,0:-335.583,-33.1133,0,-335.583,-33.1133,-335.583	1/1:96:0,96,0:0:0:96,0:3275,0:-294.501,-28.8989,0,-294.501,-28.8989,-294.501	1/2:48:0,23,24:0:0:23,24:794,860:-134.639,-70.1377,-63.214,-64.4941,0,-57.2694	1/2:119:0,69,50:0:0:69,50:2262,1800:-329.503,-147.129,-126.358,-182.72,0,-167.668	1/1:154:0,151,3:0:0:151,3:5166,104:-464.199,-45.4555,0,-455.746,-36.6558,-454.843	1/1:90:0,90,0:0:0:90,0:3120,0:-280.754,-27.0927,0,-280.754,-27.0927,-280.754	1/2:189:0,72,116:0:0:72,116:2481,4156:-539.407,-338.867,-317.193,-200.529,0,-165.609	1/1:77:0,77,0:0:0:77,0:2670,0:-240.271,-23.1793,0,-240.271,-23.1793,-240.271	1/2:9:0,3,5:0:0:3,5:104,180:-23.1891,-14.737,-13.8339,-8.48812,0,-6.98297	1/1:144:0,143,0:0:0:143,0:4861,0:-436.63,-43.0473,0,-436.63,-43.0473,-436.63	1/1:57:0,56,0:0:0:56,0:1906,0:-171.579,-16.8577,0,-171.579,-16.8577,-171.579	1/2:9:0,5,4:0:0:5,4:173,140:-25.797,-11.7405,-10.2353,-14.4047,0,-13.2005	1/2:92:0,38,54:0:0:38,54:1317,1918:-263.672,-156.641,-145.202,-107.381,0,-91.1256	1/2:44:0,27,17:0:0:27,17:912,608:-123.845,-49.9345,-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chr11	25272662	.	C	A	20063.8	PASS	AB=0.520399;ABP=10.9835;AC=40;AF=0.212766;AN=188;AO=1164;CIGAR=1X;DP=4906;DPB=4906;DPRA=1.36092;EPP=2418.95;EPPR=7334.45;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9278;MQMR=59.9901;NS=94;NUMALT=1;ODDS=0.32014;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41655;QR=133781;RO=3739;RPL=1158;RPP=2478.76;RPPR=7617.76;RPR=6;RUN=1;SAF=7;SAP=2470.17;SAR=1157;SRF=34;SRP=7829.51;SRR=3705;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:57:35,22:35:1251:22:792:-54.447,0,-95.7356	0/0:106:106,0:106:3788:0:0:0,-31.9092,-341.119	0/1:116:50,66:50:1796:66:2351:-176.928,0,-127.003	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:72:72,0:72:2567:0:0:0,-21.6742,-231.28	0/1:37:17,20:17:604:20:712:-53.2685,0,-43.5525	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:29:28,0:28:1008:0:0:0,-8.42884,-90.6761	0/1:53:27,25:27:968:25:892:-64.7402,0,-71.5782	0/1:43:16,27:16:572:27:972:-74.8536,0,-38.8691	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:35:13,22:13:468:22:774:-59.4439,0,-31.9236	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	0/1:102:57,45:57:2040:45:1590:-112.682,0,-153.167	0/0:95:95,0:95:3372:0:0:0,-28.5978,-303.695	0/1:67:28,39:28:1008:39:1404:-106.49,0,-70.8673	0/1:44:20,24:20:716:24:864:-64.8372,0,-51.5224	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:148:93,55:93:3321:55:1976:-133.562,0,-254.554	0/0:118:118,0:118:4231:0:0:0,-35.5215,-380.779	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.82	0/1:125:50,75:50:1780:75:2688:-204.531,0,-122.854	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:97:44,52:44:1561:52:1868:-139.141,0,-111.521	0/1:56:26,30:26:936:30:1080:-80.6556,0,-67.7018	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:52:24,28:24:864:28:1008:-75.3828,0,-62.429	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:51:50,1:50:1781:1:32:0,-12.1532,-157.372	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:46:22,24:22:792:24:864:-64.2352,0,-57.7583	0/1:89:41,48:41:1476:48:1699:-126.404,0,-106.345	0/0:117:114,3:114:4057:3:108:0,-25.1453,-355.24	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:69:21,48:21:741:48:1711:-133.503,0,-46.2405	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:49:48,1:48:1724:1:36:0,-11.1522,-151.847	0/1:8:1,7:1:36:7:243:-19.7992,0,-1.19003	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:21:7,14:7:252:14:504:-39.3702,0,-16.7073	0/1:21:7,14:7:252:14:504:-39.3718,0,-16.7073	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:52:27,25:27:972:25:900:-65.6675,0,-72.1443	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:172:90,82:90:3216:82:2936:-212.38,0,-237.886	0/0:120:116,4:116:4164:4:144:0,-22.81,-361.622	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	0/0:62:61,1:61:2181:1:36:0,-15.0656,-192.956	0/1:79:36,43:36:1288:43:1536:-114.645,0,-92.4422	0/0:116:111,5:111:3976:5:180:0,-18.3674,-341.478	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/1:25:13,12:13:464:12:432:-31.6954,0,-34.5718	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.065	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:99:44,55:44:1580:55:1960:-146.871,0,-112.69	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:85:47,38:47:1679:38:1368:-97.8333,0,-125.807	0/1:15:2,13:2:72:13:468:-37.9442,0,-2.32127	0/1:60:36,24:36:1292:24:860:-59.66,0,-98.522	0/0:57:57,0:57:2043:0:0:0,-17.1587,-184.141	0/0:107:106,1:106:3799:1:36:0,-28.6119,-338.509	0/1:33:21,12:21:756:12:428:-28.9248,0,-58.4332	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:66:27,39:27:964:39:1391:-105.62,0,-67.2088	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:36:17,19:17:608:19:680:-50.6921,0,-44.2149	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:65:25,40:25:892:40:1440:-110.329,0,-61.0327	0/1:37:18,19:18:644:19:680:-50.3911,0,-47.1525	0/0:102:102,0:102:3621:0:0:0,-30.7051,-326.096	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.433
chr11	25323637	.	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chr11	25323680	.	CTAG	TTAG	76830.5	PASS	AB=0.539461;ABP=32.1447;AC=148;AF=0.795699;AN=186;AO=3617;CIGAR=1X3M;DP=4623;DPB=4623;DPRA=0;EPP=7857.23;EPPR=2152.77;GTI=0;LEN=1;MEANALT=1.15054;MQM=59.6154;MQMR=59.6394;NS=93;NUMALT=1;ODDS=1.23468;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129442;QR=35146;RO=990;RPL=3617;RPP=7857.23;RPPR=2152.77;RPR=0;RUN=1;SAF=0;SAP=7857.23;SAR=3617;SRF=0;SRP=2152.77;SRR=990;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:324:-29.5043,-2.70927,0	0/1:67:25,42:25:897:42:1500:-115.122,0,-60.8817	1/1:60:0,60:0:0:60:2148:-193.381,-18.0618,0	0/1:110:54,56:54:1928:56:1999:-146.507,0,-140.679	1/1:6:0,6:0:0:6:216:-19.7858,-1.80618,0	1/1:25:0,25:0:0:25:885:-79.9583,-7.52575,0	1/1:52:0,52:0:0:52:1868:-168.386,-15.6536,0	1/1:69:0,69:0:0:69:2465:-222.093,-20.7711,0	0/1:35:16,18:16:569:18:636:-46.9925,0,-40.9666	1/1:78:0,78:0:0:78:2795:-251.779,-23.4803,0	1/1:37:0,37:0:0:37:1322:-119.258,-11.1381,0	0/1:48:20,28:20:716:28:1000:-75.8578,0,-50.312	0/1:38:18,20:18:646:20:720:-53.6781,0,-47.0241	1/1:76:0,76:0:0:76:2736:-246.444,-22.8783,0	0/1:41:16,25:16:563:25:900:-68.9788,0,-38.6552	1/1:41:0,41:0:0:41:1468:-132.411,-12.3422,0	1/1:58:0,58:0:0:58:2076:-187.094,-17.4597,0	0/1:35:16,19:16:570:19:654:-48.6333,0,-41.0969	0/1:26:11,15:11:385:15:540:-41.1098,0,-27.1586	0/1:50:24,26:24:850:26:932:-69.1474,0,-61.7116	1/1:43:0,42:0:0:42:1489:-134.119,-12.6433,0	0/1:66:41,24:41:1456:24:864:-58.1549,0,-111.353	0/1:54:25,28:25:891:28:996:-73.6488,0,-64.199	1/1:71:0,71:0:0:71:2556:-230.144,-21.3731,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:187:84,102:84:2953:102:3664:-273.563,0,-209.77	1/1:89:0,88:0:0:88:3156:-283.93,-26.4906,0	1/1:20:0,20:0:0:20:711:-64.3102,-6.0206,0	1/1:129:0,129:0:0:129:4595:-413.704,-38.8329,0	0/1:101:45,56:45:1584:56:2008:-150.575,0,-112.445	1/1:52:0,51:0:0:51:1832:-164.81,-15.3525,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:116:53,63:53:1899:63:2264:-169.1,0,-136.269	0/1:91:42,49:42:1494:49:1760:-131.276,0,-107.342	1/1:30:0,30:0:0:30:1076:-97.1283,-9.0309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:61:19,42:19:684:42:1504:-117.278,0,-43.5271	1/1:15:0,15:0:0:15:540:-48.7409,-4.51545,0	1/1:62:0,62:0:0:62:2217:-199.788,-18.6639,0	1/1:43:0,43:0:0:43:1548:-139.606,-12.9443,0	1/1:41:0,41:0:0:41:1476:-133.004,-12.3422,0	0/1:35:18,17:18:627:17:612:-44.8774,0,-46.162	0/1:49:24,25:24:854:25:900:-66.5624,0,-62.2524	1/1:95:2,93:2:72:93:3317:-291.899,-21.7611,0	1/1:64:0,64:0:0:64:2259:-203.55,-19.2659,0	0/1:70:35,34:35:1221:34:1209:-87.9767,0,-89.0535	1/1:66:0,66:0:0:66:2353:-212.024,-19.868,0	0/1:7:6,1:6:209:1:36:-1.49107,0,-17.0431	1/1:54:0,54:0:0:54:1925:-173.496,-16.2556,0	1/1:33:0,32:0:0:32:1119:-100.777,-9.63296,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:67:0,67:0:0:67:2408:-216.967,-20.169,0	0/1:20:10,10:10:336:10:360:-26.7213,0,-24.5431	0/1:4:3,1:3:106:1:36:-2.39415,0,-8.68498	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:38:0,38:0:0:38:1368:-123.416,-11.4391,0	0/1:95:36,59:36:1275:59:2107:-161.13,0,-86.4471	.:.:.:.:.:.:.:.	0/1:136:57,79:57:2019:79:2824:-213.423,0,-140.549	1/1:97:0,96:0:0:96:3434:-308.904,-28.8989,0	0/1:26:10,16:10:357:16:561:-42.9903,0,-24.6455	1/1:33:1,32:1:36:32:1148:-100.025,-6.33572,0	0/1:68:29,39:29:1023:39:1404:-106.187,0,-71.9124	1/1:56:0,56:0:0:56:2002:-180.183,-16.8577,0	0/1:22:11,10:11:383:10:360:-26.0633,0,-28.1227	1/1:36:0,36:0:0:36:1291:-116.492,-10.8371,0	1/1:53:0,52:0:0:52:1872:-168.481,-15.6536,0	0/1:14:11,3:11:395:3:108:-5.86075,0,-31.6777	1/1:35:1,34:1:36:34:1220:-106.506,-6.94682,0	1/1:35:0,32:0:0:32:1137:-102.074,-9.63296,0	1/1:92:0,92:0:0:92:3301:-297.262,-27.6948,0	0/1:62:28,34:28:1007:34:1215:-90.7154,0,-72.2825	1/1:23:0,23:0:0:23:828:-74.835,-6.92369,0	0/1:53:22,31:22:784:31:1112:-84.4344,0,-54.8725	0/1:15:4,11:4:143:11:396:-31.4673,0,-8.69763	0/1:27:10,17:10:354:17:612:-47.2856,0,-24.0705	1/1:50:0,50:0:0:50:1782:-160.622,-15.0515,0	1/1:63:0,63:0:0:63:2249:-202.662,-18.9649,0	0/1:84:46,38:46:1647:38:1368:-98.0045,0,-123.174	1/1:54:0,54:0:0:54:1936:-174.507,-16.2556,0	1/1:50:0,50:0:0:50:1792:-161.557,-15.0515,0	0/1:83:37,45:37:1326:45:1601:-119.33,0,-94.5781	1/1:30:0,30:0:0:30:1080:-97.4865,-9.0309,0	0/1:48:21,27:21:747:27:972:-73.3403,0,-53.1056	1/1:43:0,43:0:0:43:1529:-137.898,-12.9443,0	1/1:36:0,36:0:0:36:1281:-115.53,-10.8371,0	0/1:69:36,33:36:1293:33:1188:-86.4483,0,-95.8984	0/1:35:21,14:21:739:14:498:-34.6183,0,-56.2973	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:62:1,61:1:36:61:2192:-193.668,-15.0656,0
chr11	25326971	.	T	A	39266.5	PASS	AB=0.477739;ABP=24.1825;AC=40;AF=0.215054;AN=186;AO=2369;CIGAR=1X;DP=11999;DPB=11999;DPRA=1.13289;EPP=5147.23;EPPR=20909.9;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9422;MQMR=59.9804;NS=93;NUMALT=1;ODDS=2.17186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84806;QR=344392;RO=9628;RPL=2369;RPP=5147.23;RPPR=20909.9;RPR=0;RUN=1;SAF=0;SAP=5147.23;SAR=2369;SRF=0;SRP=20909.9;SRR=9628;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:207:109,98:109:3904:98:3505:-253.345,0,-289.24	0/0:146:146,0:146:5232:0:0:0,-43.9504,-470.824	0/1:223:117,106:117:4196:106:3804:-275.399,0,-310.689	0/0:91:90,1:90:3209:1:36:0,-23.7955,-285.434	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/0:225:223,2:223:8000:2:72:0,-60.895,-713.182	0/0:257:257,0:257:9177:0:0:0,-77.3647,-825.903	0/1:129:75,54:75:2688:54:1920:-134.244,0,-203.332	0/0:209:209,0:209:7473:0:0:0,-62.9153,-672.613	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/1:123:70,53:70:2493:53:1896:-133.888,0,-187.595	0/1:108:51,57:51:1832:57:2052:-152.44,0,-132.65	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.485	0/1:107:54,53:54:1913:53:1908:-139.787,0,-140.235	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.214	0/0:136:136,0:136:4872:0:0:0,-40.9401,-438.633	0/1:90:37,53:37:1328:53:1900:-144.185,0,-92.7295	0/1:56:24,32:24:860:32:1136:-85.6912,0,-60.8642	0/1:256:126,130:126:4489:130:4654:-341.944,0,-327.116	0/0:208:208,0:208:7434:0:0:0,-62.6142,-669.103	0/1:79:30,49:30:1076:49:1760:-134.903,0,-73.3715	0/1:186:103,83:103:3700:83:2976:-212.078,0,-277.209	0/0:219:218,1:218:7780:1:36:0,-62.3273,-696.631	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/1:293:155,138:155:5560:138:4940:-356.547,0,-412.321	0/0:367:367,0:367:13137:0:0:0,-110.478,-1182.13	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:320:320,0:320:11453:0:0:0,-96.3296,-1030.64	0/1:179:96,83:96:3432:83:2965:-213.197,0,-255.208	0/0:201:200,1:200:7157:1:36:0,-56.9088,-640.585	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:321:174,147:174:6221:147:5260:-376.906,0,-463.355	0/1:188:90,98:90:3232:98:3512:-259.682,0,-234.507	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:143:81,62:81:2885:62:2228:-157.737,0,-216.838	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:143:143,0:143:5124:0:0:0,-43.0473,-461.302	0/0:140:140,0:140:5020:0:0:0,-42.1442,-451.946	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/1:150:73,77:73:2592:77:2745:-202.137,0,-188.319	0/1:96:50,45:50:1792:45:1604:-115.693,0,-132.605	0/0:205:204,1:204:7301:1:36:0,-58.1129,-653.541	0/0:128:128,0:128:4580:0:0:0,-38.5318,-412.309	0/1:139:70,69:70:2496:69:2476:-181.247,0,-183.05	0/0:213:213,0:213:7597:0:0:0,-64.1194,-683.77	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:151:151,0:151:5412:0:0:0,-45.4555,-487.209	0/0:106:106,0:106:3783:0:0:0,-31.9092,-340.669	0/1:18:13,5:13:460:5:180:-11.1326,0,-36.3168	0/0:112:112,0:112:3992:0:0:0,-33.7154,-359.472	0/1:73:35,38:35:1256:38:1360:-100.725,0,-91.3701	.:.:.:.:.:.:.:.	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:95:94,0:94:3345:0:0:0,-28.2968,-300.907	0/1:134:76,58:76:2732:58:2072:-146.413,0,-205.784	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:147:86,61:86:3069:61:2196:-153.646,0,-232.186	0/0:278:272,6:272:9737:6:208:0,-64.6273,-857.217	0/1:44:25,19:25:892:19:680:-48.2838,0,-67.3544	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/1:177:82,95:82:2932:95:3389:-251.942,0,-210.832	0/0:136:136,0:136:4884:0:0:0,-40.9401,-439.711	0/1:46:28,18:28:1008:18:640:-44.0819,0,-77.189	0/0:123:123,0:123:4389:0:0:0,-37.0267,-395.183	0/0:147:147,0:147:5248:0:0:0,-44.2514,-472.459	0/1:20:15,5:15:536:5:180:-10.5315,0,-42.5542	0/0:140:140,0:140:5012:0:0:0,-42.1442,-451.208	0/0:76:76,0:76:2694:0:0:0,-22.8783,-242.702	0/0:306:306,0:306:10917:0:0:0,-92.1152,-982.433	0/1:167:94,73:94:3352:73:2620:-185.771,0,-251.626	0/0:181:181,0:181:6481:0:0:0,-54.4864,-583.373	0/1:154:91,63:91:3248:63:2260:-157.304,0,-246.183	0/1:9:1,8:1:36:8:288:-23.5294,0,-0.889005	0/1:137:71,66:71:2506:66:2376:-172.826,0,-184.549	0/0:110:110,0:110:3918:0:0:0,-33.1133,-352.811	0/0:232:232,0:232:8258:0:0:0,-69.839,-743.007	0/1:155:77,78:77:2760:78:2773:-203.151,0,-201.982	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:145:145,0:145:5204:0:0:0,-43.6493,-468.497	0/1:210:109,101:109:3900:101:3620:-262.782,0,-287.941	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.025	0/1:143:70,73:70:2520:73:2615:-192.533,0,-184.004	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/1:108:60,48:60:2126:48:1712:-121.854,0,-159.092	0/1:94:45,49:45:1608:49:1756:-130.027,0,-116.713	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/0:165:164,1:164:5857:1:36:0,-46.0717,-523.643
chr11	25460745	.	G	A	128902	PASS	AB=0.459241;ABP=60.0095;AC=142;AF=0.755319;AN=188;AO=6174;CIGAR=1X;DP=8372;DPB=8372;DPRA=0;EPP=13401;EPPR=4756.38;GTI=0;LEN=1;MEANALT=1.01064;MQM=59.9629;MQMR=59.3364;NS=94;NUMALT=1;ODDS=2.30687;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=220386;QR=78466;RO=2197;RPL=6173;RPP=13401;RPPR=4756.38;RPR=1;RUN=1;SAF=6174;SAP=13409.7;SAR=0;SRF=2197;SRP=4773.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:183:84,99:84:3011:99:3551:-264.709,0,-216.132	1/1:160:0,160:0:0:160:5718:-514.735,-48.1648,0	0/1:159:72,87:72:2573:87:3101:-231.452,0,-178.855	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:39:2,37:2:72:37:1320:-112.265,-4.90345,0	1/1:109:3,106:3:108:106:3766:-331.179,-24.849,0	1/1:109:4,105:4:144:105:3719:-321.596,-19.4987,0	0/1:74:48,26:48:1720:26:926:-61.3815,0,-132.809	1/1:101:0,101:0:0:101:3613:-325.374,-30.404,0	1/1:27:2,25:2:72:25:888:-73.3564,-1.29109,0	0/1:37:21,16:21:756:16:572:-40.6753,0,-57.2291	0/1:40:23,17:23:811:17:612:-43.3722,0,-61.2688	1/1:54:0,54:0:0:54:1924:-173.436,-16.2556,0	0/1:39:20,19:20:712:19:684:-50.1502,0,-52.6665	1/1:46:1,45:1:32:45:1608:-141.811,-10.6481,0	1/1:46:1,45:1:36:45:1608:-141.412,-10.2491,0	0/1:47:26,21:26:919:21:742:-52.9536,0,-68.8778	0/1:34:21,13:21:743:13:468:-32.2246,0,-56.9583	0/1:224:122,102:122:4380:102:3626:-259.114,0,-324.903	1/1:104:0,104:0:0:104:3694:-332.661,-31.3071,0	0/1:131:89,42:89:3168:42:1496:-95.4996,0,-245.908	0/1:110:62,48:62:2232:48:1724:-122.332,0,-163.95	1/1:105:1,104:1:32:104:3691:-329.191,-28.4088,0	1/1:73:0,73:0:0:73:2609:-235.056,-21.9752,0	0/1:276:162,114:162:5767:114:4088:-285.021,0,-436.062	1/1:134:3,131:3:104:131:4679:-411.511,-30.6352,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:244:0,244:0:0:244:8729:-785.6,-73.4513,0	0/1:166:80,86:80:2849:86:3084:-227.817,0,-206.676	1/1:155:0,155:0:0:155:5538:-498.542,-46.6597,0	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/1:19:14,5:14:500:5:180:-10.8325,0,-39.6166	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:133:67,66:67:2404:66:2372:-173.683,0,-176.579	0/1:169:83,86:83:2976:86:3065:-225.204,0,-217.198	1/1:30:0,29:0:0:29:1040:-93.5546,-8.72987,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:160:64,96:64:2277:96:3393:-257.419,0,-157.026	1/1:30:1,29:1:36:29:1040:-90.3161,-5.43263,0	1/1:157:2,155:2:72:155:5533:-491.252,-40.425,0	1/1:67:4,63:4:129:63:2254:-194.467,-11.5146,0	1/1:32:0,32:0:0:32:1133:-102.277,-9.63296,0	0/1:103:54,49:54:1927:49:1730:-124.975,0,-142.7	0/1:107:63,44:63:2249:44:1574:-109.733,0,-170.461	1/1:250:1,249:1:36:249:8835:-792.665,-72.7906,0	1/1:89:0,89:0:0:89:3190:-287.323,-26.7917,0	0/1:118:63,55:63:2248:55:1972:-142.233,0,-165.34	1/1:142:1,141:1:36:141:5036:-449.731,-39.148,0	0/1:21:13,8:13:468:8:284:-19.5817,0,-33.0572	1/1:127:1,126:1:36:126:4493:-400.942,-34.6325,0	1/1:63:4,59:4:144:59:2107:-178.342,-7.40817,0	0/1:24:21,3:21:748:3:108:-2.85045,0,-60.4206	1/1:128:6,122:6:216:122:4331:-370.167,-18.7413,0	0/1:67:33,34:33:1184:34:1190:-87.232,0,-86.6993	0/1:6:4,2:4:144:2:72:-5.03054,0,-9.75054	0/1:20:6,14:6:212:14:504:-39.6775,0,-10.2257	1/1:73:0,73:0:0:73:2609:-235.056,-21.9752,0	0/1:88:51,37:51:1824:37:1328:-93.3316,0,-137.95	0/1:21:18,3:18:639:3:108:-3.75354,0,-46.0212	0/1:223:119,104:119:4223:104:3721:-267.96,0,-312.263	1/1:152:3,149:3:108:149:5298:-466.872,-35.6814,0	0/1:59:32,27:32:1152:27:968:-69.6766,0,-86.2294	1/1:98:1,97:1:36:97:3448:-306.934,-25.9027,0	0/1:193:101,92:101:3617:92:3286:-237.857,0,-267.635	1/1:158:1,157:1:36:157:5609:-501.331,-43.9645,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:81:2,79:2:72:79:2828:-247.922,-17.5467,0	1/1:65:2,63:2:72:63:2249:-195.835,-12.7302,0	0/1:41:35,6:35:1256:6:216:-7.44828,0,-98.9601	1/1:125:0,125:0:0:125:4459:-401.467,-37.6288,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:109:0,109:0:0:109:3902:-351.374,-32.8123,0	0/1:232:124,108:124:4429:108:3832:-275.234,0,-328.942	1/1:119:3,116:3:104:116:4125:-361.72,-26.1198,0	0/1:76:36,40:36:1292:40:1428:-105.939,0,-93.7055	0/1:9:7,2:7:244:2:72:-4.12745,0,-19.5902	0/1:122:74,48:74:2656:48:1724:-118.72,0,-201.022	1/1:110:8,102:8:284:102:3649:-302.709,-7.20995,0	1/1:203:3,200:3:108:200:7155:-633.929,-51.0339,0	0/1:82:45,37:45:1608:37:1328:-95.1354,0,-120.326	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:88:43,45:43:1539:45:1612:-118.879,0,-111.291	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:64:34,30:34:1197:30:1076:-77.8869,0,-88.7675	0/1:44:22,22:22:788:22:788:-57.9995,0,-57.9995	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:40:23,17:23:820:17:612:-43.3722,0,-62.0813	0/1:49:38,11:38:1359:11:396:-21.2323,0,-107.859	1/1:148:0,148:0:0:148:5289:-476.142,-44.5524,0	1/1:60:1,59:1:36:59:2105:-186.119,-14.4635,0
chr11	25460764	.	C	T	127295	PASS	AB=0.461499;ABP=53.1727;AC=142;AF=0.755319;AN=188;AO=6129;CIGAR=1X;DP=8289;DPB=8289;DPRA=0;EPP=13312;EPPR=4684.7;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.9656;MQMR=59.34;NS=94;NUMALT=1;ODDS=0.342332;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218001;QR=75731;RO=2156;RPL=6129;RPP=13312;RPPR=4684.7;RPR=0;RUN=1;SAF=6129;SAP=13312;SAR=0;SRF=2156;SRP=4684.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:177:83,94:83:2955:94:3354:-248.794,0,-212.902	1/1:161:0,161:0:0:161:5745:-517.166,-48.4658,0	0/1:152:72,80:72:2528:80:2833:-209.45,0,-176.913	1/1:52:0,52:0:0:52:1855:-167.229,-15.6536,0	1/1:41:2,39:2:72:39:1400:-119.462,-5.50551,0	1/1:110:3,107:3:104:107:3804:-334.967,-25.5224,0	1/1:109:4,105:4:144:105:3714:-321.147,-19.4987,0	0/1:72:46,26:46:1609:26:932:-62.5247,0,-123.423	1/1:100:0,100:0:0:100:3562:-320.788,-30.103,0	1/1:26:2,24:2:72:24:823:-67.5449,-0.990058,0	0/1:36:21,15:21:739:15:531:-37.2848,0,-55.9953	0/1:42:24,18:24:842:18:635:-44.8337,0,-63.4538	1/1:55:0,55:0:0:55:1941:-174.965,-16.5567,0	0/1:37:18,19:18:639:19:665:-49.0347,0,-46.7001	1/1:43:0,43:0:0:43:1526:-137.632,-12.9443,0	1/1:44:1,43:1:36:43:1539:-135.204,-9.64705,0	0/1:46:26,20:26:923:20:699:-49.3851,0,-69.5394	0/1:32:18,14:18:612:14:504:-36.0651,0,-45.7646	0/1:220:117,102:117:4125:102:3651:-262.506,0,-303.431	1/1:109:0,109:0:0:109:3855:-346.877,-32.8123,0	0/1:129:87,42:87:3071:42:1503:-96.731,0,-237.788	0/1:109:60,49:60:2112:49:1734:-123.53,0,-154.475	1/1:104:1,103:1:36:103:3644:-324.566,-27.7088,0	1/1:73:0,73:0:0:73:2603:-234.514,-21.9752,0	0/1:265:157,108:157:5474:108:3846:-266.564,0,-413.023	1/1:138:2,136:2:72:136:4881:-432.589,-34.7054,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:238:0,238:0:0:238:8477:-762.934,-71.6451,0	0/1:164:79,85:79:2786:85:3017:-222.392,0,-201.61	1/1:150:0,150:0:0:150:5364:-482.89,-45.1545,0	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/1:18:13,5:13:464:5:180:-11.1335,0,-36.679	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:9:1,8:1:36:8:280:-22.83,0,-0.889005	0/1:134:68,66:68:2390:66:2344:-170.862,0,-175.02	0/1:173:83,90:83:2927:90:3196:-235.785,0,-211.586	1/1:32:0,32:0:0:32:1131:-102.098,-9.63296,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:165:66,99:66:2332:99:3511:-266.53,0,-160.468	1/1:30:1,29:1:36:29:1030:-89.414,-5.43263,0	1/1:155:2,153:2:72:153:5451:-483.883,-39.8229,0	1/1:67:5,62:5:172:62:2190:-185.061,-7.86445,0	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	0/1:101:53,48:53:1887:48:1689:-121.889,0,-139.704	0/1:107:63,44:63:2189:44:1557:-108.201,0,-165.063	1/1:248:1,247:1:36:247:8761:-786.004,-72.1885,0	1/1:88:0,88:0:0:88:3126:-281.567,-26.4906,0	0/1:118:63,55:63:2231:55:1968:-141.874,0,-163.811	1/1:139:1,137:1:36:137:4912:-438.706,-38.2287,0	0/1:21:13,8:13:442:8:273:-18.5786,0,-31.3551	1/1:127:1,126:1:36:126:4507:-402.2,-34.6325,0	1/1:61:4,57:4:144:57:2024:-170.874,-6.80611,0	0/1:25:22,3:22:767:3:108:-2.54942,0,-61.8237	1/1:125:5,120:5:154:120:4277:-370.813,-23.464,0	0/1:65:33,32:33:1135:32:1148:-84.0629,0,-82.8845	0/1:6:4,2:4:144:2:72:-5.03054,0,-9.75054	0/1:19:5,14:5:180:14:491:-38.8015,0,-7.33769	1/1:68:0,68:0:0:68:2431:-219.045,-20.47,0	0/1:88:49,38:49:1736:38:1337:-94.0785,0,-129.975	0/1:21:18,3:18:624:3:108:-3.75354,0,-45.5581	0/1:216:113,103:113:3941:103:3690:-267.278,0,-289.005	1/1:155:3,152:3:108:152:5388:-474.97,-36.5845,0	0/1:59:31,28:31:1072:28:1004:-72.9151,0,-79.0243	1/1:99:1,98:1:36:98:3497:-311.341,-26.2037,0	0/1:191:100,91:100:3506:91:3241:-234.406,0,-258.256	1/1:157:1,156:1:36:156:5560:-496.928,-43.6634,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:79:3,76:3:99:76:2704:-234.366,-14.5448,0	1/1:64:2,62:2:72:62:2215:-192.777,-12.4292,0	0/1:38:32,6:32:1132:6:216:-8.35137,0,-89.025	1/1:123:0,123:0:0:123:4380:-394.376,-37.0267,0	1/1:29:0,29:0:0:29:1013:-91.4794,-8.72987,0	1/1:112:0,112:0:0:112:3962:-356.767,-33.7154,0	0/1:233:123,109:123:4318:109:3863:-277.636,0,-318.597	1/1:120:3,117:3:108:117:4174:-365.498,-26.0484,0	0/1:71:35,36:35:1235:36:1268:-93.0468,0,-90.0803	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:120:72,48:72:2526:48:1724:-119.322,0,-189.931	1/1:111:8,103:8:256:103:3665:-306.701,-10.0621,0	1/1:201:3,198:3:108:198:7056:-625.025,-50.4319,0	0/1:81:44,37:44:1531:37:1316:-94.3561,0,-113.695	1/1:41:0,41:0:0:41:1431:-129.082,-12.3422,0	1/1:48:1,47:1:36:47:1675:-147.438,-10.8512,0	0/1:89:44,45:44:1552:45:1591:-116.686,0,-112.157	1/1:26:0,26:0:0:26:934:-84.3793,-7.82678,0	0/1:60:31,29:31:1074:29:1032:-75.1317,0,-78.9019	0/1:42:21,21:21:748:21:748:-55.002,0,-55.002	1/1:30:0,30:0:0:30:1054:-95.1692,-9.0309,0	0/1:41:24,17:24:841:17:608:-42.7098,0,-63.6641	0/1:52:39,13:39:1379:13:451:-25.2663,0,-108.754	1/1:143:0,143:0:0:143:5070:-456.446,-43.0473,0	1/1:56:1,55:1:36:55:1932:-170.557,-13.2594,0
chr11	25522971	.	T	C	41159.7	PASS	AB=0.508522;ABP=5.26793;AC=41;AF=0.22043;AN=186;AO=1837;CIGAR=1X;DP=7847;DPB=7847;DPRA=1.27213;EPP=33.6509;EPPR=235.484;GTI=1;LEN=1;MEANALT=1.02041;MQM=60;MQMR=59.9825;NS=93;NUMALT=1;ODDS=0.260564;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=64949;QR=212812;RO=6008;RPL=1836;RPP=3983.32;RPPR=12962.5;RPR=1;RUN=1;SAF=837;SAP=34.4169;SAR=1000;SRF=2593;SRP=247.223;SRR=3415;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1157	0/1:76:51,25:51:1792:25:887:-57.2698,0,-138.681	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.725	0/1:132:61,71:61:2136:71:2527:-187.946,0,-152.771	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:55:55,0:55:1959:0:0:0,-16.5566,-176.585	0/0:74:73,1:73:2604:1:21:0,-20.1763,-232.509	0/0:109:109,0:109:3885:0:0:0,-32.8123,-349.844	0/1:82:37,45:37:1316:45:1592:-118.883,0,-94.0573	0/0:55:55,0:55:1940:0:0:0,-16.5566,-174.874	0/0:89:89,0:89:3137:0:0:0,-26.7917,-282.558	0/1:132:67,65:67:2392:65:2316:-168.965,0,-175.802	0/1:126:64,62:64:2268:62:2184:-158.895,0,-166.453	0/0:135:133,2:133:4737:2:72:0,-33.8023,-419.653	0/1:111:53,58:53:1883:58:2045:-150.905,0,-136.334	0/0:107:107,0:107:3766:0:0:0,-32.2102,-339.142	0/0:100:99,1:99:3527:1:36:0,-26.5047,-314.042	0/1:109:56,53:56:1987:53:1870:-135.766,0,-146.291	0/1:70:31,39:31:1084:39:1379:-103.336,0,-76.794	0/1:122:66,56:66:2300:56:2000:-143.548,0,-170.532	0/0:109:109,0:109:3879:0:0:0,-32.8123,-349.306	0/1:30:11,19:11:396:19:684:-52.8594,0,-26.9518	0/1:50:26,24:26:909:24:831:-60.053,0,-67.0717	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.988	0/0:82:82,0:82:2901:0:0:0,-24.6845,-261.326	0/1:167:79,88:79:2797:88:3113:-230.126,0,-201.698	0/0:159:158,0:158:5572:0:0:0,-47.5627,-501.408	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:126:124,2:124:4356:2:72:0,-31.0931,-385.379	0/1:68:37,31:37:1305:31:1100:-78.8397,0,-97.2794	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.638	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	.:.:.:.:.:.:.:.	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/1:282:137,145:137:4857:145:5089:-373.267,0,-352.127	0/1:49:28,21:28:992:21:744:-52.5339,0,-74.8439	0/0:96:96,0:96:3419:0:0:0,-28.8989,-307.925	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:92:44,48:44:1520:48:1692:-124.869,0,-109.392	0/0:66:66,0:66:2343:0:0:0,-19.868,-211.129	0/0:98:98,0:98:3435:0:0:0,-29.5009,-309.364	0/0:125:125,0:125:4464:0:0:0,-37.6287,-401.931	0/0:109:109,0:109:3854:0:0:0,-32.8123,-347.056	0/1:74:43,31:43:1512:31:1110:-77.9351,0,-114.094	0/1:95:53,42:53:1857:42:1486:-105.435,0,-138.807	0/0:85:84,1:84:2968:1:36:0,-21.9893,-263.755	0/0:53:53,0:53:1872:0:0:0,-15.9546,-168.756	0/1:101:44,57:44:1568:57:2016:-151.307,0,-111.008	0/0:68:68,0:68:2416:0:0:0,-20.47,-217.697	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:91:91,0:91:3175:0:0:0,-27.3937,-285.972	0/0:28:28,0:28:975:0:0:0,-8.42884,-88.0616	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:84:84,0:84:2968:0:0:0,-25.2865,-267.353	0/1:34:17,17:17:612:17:612:-45.1784,0,-45.1784	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:6:6,0:6:193:0:0:0,-1.80618,-17.6856	0/0:62:62,0:62:2197:0:0:0,-18.6639,-197.994	0/1:137:71,66:71:2548:66:2319:-167.73,0,-188.329	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:74:35,39:35:1252:39:1392:-103.303,0,-90.7089	0/0:109:106,3:106:3757:3:108:0,-22.7371,-328.256	0/1:57:29,28:29:1009:28:977:-71.0813,0,-73.9602	0/0:58:58,0:58:2017:0:0:0,-17.4597,-181.799	0/1:93:40,53:40:1428:53:1867:-140.31,0,-100.822	0/0:121:120,1:120:4237:1:36:0,-32.8264,-377.916	0/1:61:38,23:38:1351:23:801:-54.0439,0,-103.527	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.789	0/0:129:129,0:129:4566:0:0:0,-38.8329,-410.618	0/1:19:12,7:12:420:7:235:-15.7576,0,-32.4145	0/0:67:67,0:67:2380:0:0:0,-20.169,-214.459	0/0:73:73,0:73:2575:0:0:0,-21.9752,-232.001	0/0:137:136,1:136:4810:1:36:0,-37.6428,-429.032	0/1:121:52,69:52:1845:69:2460:-185.23,0,-129.904	0/0:98:98,0:98:3438:0:0:0,-29.5009,-309.633	0/1:100:43,57:43:1536:57:2035:-153.319,0,-108.43	0/1:9:2,7:2:68:7:252:-20.3197,0,-3.74844	0/1:99:52,47:52:1844:47:1680:-121.685,0,-136.438	0/0:93:93,0:93:3320:0:0:0,-27.9958,-299.019	0/0:116:116,0:116:4110:0:0:0,-34.9195,-370.085	0/1:107:46,60:46:1640:60:2130:-159.698,0,-115.62	0/0:130:129,1:129:4579:1:36:0,-35.5356,-408.652	0/0:119:119,0:119:4233:0:0:0,-35.8226,-381.15	0/1:174:83,91:83:2944:91:3224:-238.003,0,-212.817	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/1:105:55,50:55:1955:50:1746:-125.812,0,-144.617	0/1:138:67,71:67:2375:71:2495:-183.26,0,-172.463	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.048	0/1:139:72,67:72:2517:67:2366:-171.355,0,-184.937	0/1:129:49,80:49:1764:80:2812:-214.487,0,-120.211	0/0:58:58,0:58:2057:0:0:0,-17.4597,-185.4	0/0:175:175,0:175:6215:0:0:0,-52.6802,-559.449
chr11	25536944	.	G	A	152029	PASS	AB=0.472289;ABP=33.6993;AC=149;AF=0.792553;AN=188;AO=7314;CIGAR=1X;DP=9761;DPB=9761;DPRA=0;EPP=15885.2;EPPR=5312.26;GTI=4;LEN=1;MEANALT=1.02128;MQM=59.9799;MQMR=59.9767;NS=94;NUMALT=1;ODDS=0.763899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=258824;QR=87190;RO=2445;RPL=7314;RPP=15885.2;RPPR=5312.26;RPR=0;RUN=1;SAF=7314;SAP=15885.2;SAR=0;SRF=2445;SRP=5312.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1093:-98.6777,-9.33193,0	0/1:164:87,77:87:3103:77:2732:-196.745,0,-230.129	1/1:102:0,102:0:0:102:3630:-326.903,-30.7051,0	0/1:234:120,114:120:4296:114:4026:-292.089,0,-316.376	1/1:58:1,57:1:36:57:2040:-180.274,-13.8615,0	1/1:62:0,62:0:0:62:2212:-199.345,-18.6639,0	1/1:153:0,153:0:0:153:5424:-488.288,-46.0576,0	1/1:141:0,141:0:0:141:4928:-443.674,-42.4452,0	0/1:127:61,66:61:2175:66:2337:-172.35,0,-157.785	1/1:122:0,122:0:0:122:4334:-390.233,-36.7257,0	1/1:69:1,68:1:36:68:2389:-211.666,-17.1728,0	0/1:96:44,52:44:1572:52:1856:-138.315,0,-112.873	0/1:85:41,44:41:1431:44:1580:-116.904,0,-103.495	1/1:67:0,67:0:0:67:2369:-213.467,-20.169,0	0/1:82:43,39:43:1510:39:1396:-101.255,0,-111.505	1/1:64:0,64:0:0:64:2273:-204.831,-19.2659,0	1/1:74:0,74:0:0:74:2636:-237.488,-22.2762,0	0/1:67:36,31:36:1273:31:1095:-78.6901,0,-94.2734	0/1:67:33,34:33:1173:34:1212:-89.2173,0,-85.7065	0/1:171:98,73:98:3494:73:2608:-183.492,0,-263.195	1/1:169:0,169:0:0:169:6003:-540.376,-50.8741,0	0/1:122:77,45:77:2764:45:1597:-107.293,0,-212.267	0/1:87:52,35:52:1863:35:1222:-84.0899,0,-141.759	1/1:88:0,88:0:0:88:3117:-280.757,-26.4906,0	1/1:67:0,67:0:0:67:2328:-209.775,-20.169,0	0/1:316:171,145:171:6104:145:5083:-362.492,0,-454.335	1/1:187:0,187:0:0:187:6573:-591.655,-56.2926,0	1/1:54:1,53:1:36:53:1884:-166.24,-12.6573,0	1/1:293:0,293:0:0:293:10385:-934.578,-88.2018,0	0/1:147:80,67:80:2831:67:2388:-170.926,0,-210.776	1/1:142:0,142:0:0:142:5030:-452.849,-42.7463,0	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:240:124,116:124:4435:116:4135:-300.088,0,-327.074	0/1:178:112,66:112:4008:66:2311:-154.663,0,-307.326	1/1:64:0,64:0:0:64:2261:-203.752,-19.2659,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:189:97,92:97:3480:92:3216:-232.766,0,-256.516	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:145:0,145:0:0:145:5176:-465.982,-43.6494,0	1/1:99:1,98:1:36:98:3507:-312.242,-26.2037,0	1/1:86:1,85:1:36:85:3021:-268.522,-22.2903,0	0/1:104:53,51:53:1896:51:1804:-131.334,0,-139.611	0/1:98:48,50:48:1724:50:1732:-126.656,0,-125.944	1/1:239:4,235:4:144:235:8272:-731.181,-58.6326,0	1/1:142:0,142:0:0:142:4947:-445.383,-42.7463,0	0/1:133:71,62:71:2543:62:2212:-159.308,0,-189.083	1/1:120:0,120:0:0:120:4215:-379.34,-36.1236,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:127:1,126:1:36:126:4494:-400.405,-34.6325,0	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	0/1:11:9,2:9:305:2:72:-3.52539,0,-24.4659	1/1:169:0,168:0:0:168:5918:-532.389,-50.573,0	0/1:59:36,23:36:1296:23:816:-56.0009,0,-99.1832	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:73:1,72:1:36:72:2497:-221.38,-18.3769,0	0/1:144:70,73:70:2500:73:2616:-192.281,0,-181.846	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	0/1:254:124,130:124:4421:130:4525:-330.953,0,-321.6	1/1:189:1,188:1:36:188:6671:-596.868,-53.2964,0	0/1:54:25,29:25:896:29:1036:-77.2983,0,-64.7047	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	0/1:191:114,77:114:4061:77:2722:-187.725,0,-308.18	1/1:88:1,87:1:36:87:3075:-273.381,-22.8924,0	0/1:31:13,18:13:459:18:636:-48.2361,0,-32.3122	1/1:68:0,68:0:0:68:2379:-214.366,-20.47,0	1/1:65:0,65:0:0:65:2325:-209.509,-19.567,0	0/1:16:14,2:14:504:2:72:-2.02024,0,-40.8816	1/1:140:1,139:1:36:139:4886:-436.298,-38.5459,0	1/1:59:0,59:0:0:59:2090:-188.366,-17.7608,0	1/1:213:0,213:0:0:213:7541:-678.717,-64.1194,0	0/1:214:107,107:107:3828:107:3787:-276.606,0,-280.297	1/1:89:3,86:3:108:86:3026:-262.493,-16.7165,0	0/1:116:54,62:54:1940:62:2174:-161.004,0,-139.957	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:144:72,72:72:2576:72:2557:-187.031,0,-188.741	1/1:126:0,126:0:0:126:4465:-402.02,-37.9298,0	1/1:200:0,200:0:0:200:7053:-634.836,-60.206,0	0/1:136:65,71:65:2304:71:2520:-186.11,0,-166.678	1/1:73:0,73:0:0:73:2593:-233.618,-21.9752,0	1/1:78:0,78:0:0:78:2784:-250.801,-23.4803,0	0/1:146:77,69:77:2711:69:2480:-179.503,0,-200.197	1/1:43:0,43:0:0:43:1528:-137.813,-12.9443,0	0/1:79:42,37:42:1491:37:1319:-95.2298,0,-110.702	0/1:72:30,42:30:1071:42:1504:-113.98,0,-75.0275	1/1:51:0,51:0:0:51:1802:-162.461,-15.3525,0	0/1:114:46,68:46:1622:68:2392:-181.222,0,-111.95	0/1:82:62,20:62:2198:20:716:-40.0833,0,-173.4	1/1:104:0,104:0:0:104:3644:-328.164,-31.3071,0	1/1:108:1,107:1:36:107:3816:-340.038,-28.913,0
chr11	25536980	.	G	A	40514.5	PASS	AB=0.521087;ABP=20.7767;AC=40;AF=0.212766;AN=188;AO=2407;CIGAR=1X;DP=9901;DPB=9901;DPRA=1.26815;EPP=5229.74;EPPR=16276;GTI=2;LEN=1;MEANALT=1;MQM=59.9734;MQMR=59.9421;NS=94;NUMALT=1;ODDS=0.525144;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85493;QR=263117;RO=7494;RPL=0;RPP=5229.74;RPPR=16276;RPR=2407;RUN=1;SAF=0;SAP=5229.74;SAR=2407;SRF=0;SRP=16276;SRR=7494;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:70:70,0:70:2425:0:0:0,-21.0721,-218.434	0/1:178:78,100:78:2726:100:3571:-268.014,0,-192	0/0:150:150,0:150:5243:0:0:0,-45.1545,-471.919	0/1:248:124,124:124:4375:124:4428:-324.024,0,-319.269	0/0:119:119,0:119:4174:0:0:0,-35.8226,-375.845	0/0:53:53,0:53:1849:0:0:0,-15.9546,-166.677	0/0:117:116,1:116:4087:1:36:0,-31.6222,-364.421	0/0:185:184,1:184:6455:1:36:0,-52.0923,-577.447	0/1:179:64,115:64:2177:115:4059:-311.604,0,-142.305	0/0:82:82,0:82:2871:0:0:0,-24.6845,-258.628	0/0:42:42,0:42:1482:0:0:0,-12.6433,-133.673	0/1:70:38,32:38:1325:32:1132:-81.1165,0,-98.4752	0/1:63:32,31:32:1130:31:1107:-80.9753,0,-83.042	0/0:74:73,1:73:2540:1:36:0,-18.6779,-225.092	0/1:71:26,45:26:924:45:1603:-123.186,0,-62.1045	0/0:50:50,0:50:1743:0:0:0,-15.0515,-157.15	0/0:57:57,0:57:2001:0:0:0,-17.1587,-180.362	0/1:45:22,23:22:747:23:824:-60.937,0,-53.9959	0/1:40:18,22:18:632:22:784:-58.8427,0,-45.1574	0/1:288:128,160:128:4480:160:5648:-421.743,0,-316.676	0/0:159:159,0:159:5586:0:0:0,-47.8638,-502.855	0/1:141:43,98:43:1493:98:3449:-268.176,0,-92.2123	0/1:184:64,120:64:2288:120:4256:-327.828,0,-150.792	0/0:134:134,0:134:4718:0:0:0,-40.338,-424.782	0/0:38:38,0:38:1342:0:0:0,-11.4391,-121.07	0/1:272:124,148:124:4356:148:5247:-390.486,0,-310.335	0/0:223:223,0:223:7856:0:0:0,-67.1297,-707.078	0/0:34:34,0:34:1194:0:0:0,-10.235,-107.764	0/0:271:271,0:271:9577:0:0:0,-81.5791,-861.888	0/1:167:92,75:92:3193:75:2671:-190.363,0,-237.318	0/0:150:150,0:150:5240:0:0:0,-45.1545,-471.74	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.358	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:9:9,0:9:301:0:0:0,-2.70927,-27.4137	0/1:183:95,88:95:3313:88:3124:-226.296,0,-243.3	0/1:178:88,90:88:3116:90:3211:-235.63,0,-227.083	0/0:64:64,0:64:2254:0:0:0,-19.2659,-203.123	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:114:63,51:63:2200:51:1811:-128.953,0,-163.947	0/0:41:41,0:41:1433:0:0:0,-12.3422,-129.264	0/0:175:174,1:174:6123:1:36:0,-49.082,-547.578	0/0:95:95,0:95:3335:0:0:0,-28.5978,-300.369	0/0:58:58,0:58:2019:0:0:0,-17.4597,-181.981	0/1:81:46,35:46:1627:35:1252:-88.6016,0,-122.311	0/1:168:99,69:99:3490:69:2468:-171.801,0,-263.739	0/0:193:192,1:192:6799:1:36:0,-54.5005,-608.388	0/0:132:132,0:132:4606:0:0:0,-39.736,-414.705	0/1:167:92,75:92:3239:75:2673:-190.542,0,-241.27	0/0:143:143,0:143:5039:0:0:0,-43.0473,-453.651	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/0:174:174,0:174:6128:0:0:0,-52.3792,-551.62	0/0:82:81,1:81:2853:1:36:0,-21.0862,-253.408	0/1:24:12,12:12:424:12:428:-31.6341,0,-31.2717	0/0:182:182,0:182:6411:0:0:0,-54.7875,-577.08	0/1:80:39,41:39:1335:41:1447:-106.442,0,-96.3591	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:13:13,0:13:459:0:0:0,-3.91339,-41.6441	0/0:79:79,0:79:2788:0:0:0,-23.7814,-251.158	0/1:102:63,39:63:2167:39:1404:-95.9542,0,-164.588	0/1:6:3,3:3:99:3:108:-8.26899,0,-7.4304	0/1:159:79,80:79:2777:80:2864:-210.134,0,-202.306	0/0:200:200,0:200:6977:0:0:0,-60.206,-628.001	0/1:104:42,62:42:1491:62:2203:-167.227,0,-103.177	0/0:81:81,0:81:2838:0:0:0,-24.3834,-255.656	0/1:208:97,111:97:3381:111:3949:-292.987,0,-241.889	0/0:153:152,1:152:5346:1:36:0,-42.4593,-477.681	0/1:22:13,9:13:451:9:324:-22.8832,0,-34.2972	0/0:95:95,0:95:3357:0:0:0,-28.5978,-302.303	0/0:66:66,0:66:2275:0:0:0,-19.868,-205.009	0/1:23:12,11:12:416:11:396:-29.0591,0,-30.811	0/0:37:36,1:36:1263:1:36:0,-7.53983,-110.373	0/0:80:80,0:80:2796:0:0:0,-24.0824,-251.879	0/0:191:190,1:190:6740:1:36:0,-53.8985,-603.082	0/1:193:90,103:90:3155:103:3652:-270.785,0,-226.076	0/0:112:112,0:112:3950:0:0:0,-33.7154,-355.694	0/1:133:66,67:66:2342:67:2381:-174.509,0,-171.002	0/1:11:10,1:10:356:1:36:-0.286945,0,-29.0699	0/1:129:62,67:62:2186:67:2354:-173.284,0,-158.173	0/0:105:105,0:105:3641:0:0:0,-31.6081,-327.705	0/0:253:253,0:253:8952:0:0:0,-76.1606,-805.669	0/1:110:58,52:58:2005:52:1821:-131.053,0,-147.607	0/0:70:70,0:70:2478:0:0:0,-21.0721,-223.273	0/0:86:86,0:86:3016:0:0:0,-25.8886,-271.673	0/1:157:84,73:84:2964:73:2565:-183.834,0,-219.732	0/0:48:48,0:48:1678:0:0:0,-14.4494,-151.302	0/1:79:44,35:44:1540:35:1256:-89.5639,0,-115.11	0/1:64:31,33:31:1091:33:1176:-86.8818,0,-79.2328	0/0:38:37,1:37:1300:1:36:0,-7.84086,-113.703	0/1:81:35,46:35:1221:46:1629:-122.513,0,-85.8068	0/1:64:19,45:19:668:45:1610:-125.924,0,-41.1797	0/0:98:98,0:98:3442:0:0:0,-29.5009,-309.976	0/0:83:83,0:83:2917:0:0:0,-24.9855,-262.767
chr11	25536995	.	ACCA	GCCG,GCCA	208329	PASS	AB=0.478373,0.517323;ABP=21.8891,15.1228;AC=148,40;AF=0.787234,0.212766;AN=188;AO=7561,2433;CIGAR=1X2M1X,1X3M;DP=10046;DPB=10046;DPRA=0,1.56067;EPP=16412.8,5286.2;EPPR=9.52472;GTI=2;LEN=4,1;MEANALT=2.08511,2.5614;MQM=59.9409,59.97;MQMR=60;NS=94;NUMALT=2;ODDS=0.236487;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=263138,85578;QR=108;RO=3;RPL=1,0;RPP=16412.8,5286.2;RPPR=9.52472;RPR=7560,2433;RUN=1,1;SAF=0,0;SAP=16421.5,5286.2;SAR=7561,2433;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:72:0,71,0:0:0:71,0:2479,0:-223.065,-21.3731,0,-223.065,-21.3731,-223.065	1/2:182:0,81,101:0:0:81,101:2841,3551:-520.594,-289.397,-265.014,-231.548,0,-201.144	1/1:153:0,152,0:0:0:152,0:5265,0:-473.726,-45.7566,0,-473.726,-45.7566,-473.726	1/2:251:0,128,123:0:0:128,123:4488,4366:-721.284,-356.074,-317.542,-365.563,0,-328.537	1/1:122:0,119,0:0:0:119,0:4150,0:-373.342,-35.8226,0,-373.342,-35.8226,-373.342	1/1:53:0,52,0:0:0:52,0:1816,0:-163.362,-15.6536,0,-163.362,-15.6536,-163.362	1/1:119:0,117,2:0:0:117,2:4059,72:-365.148,-35.2205,0,-359.273,-28.9858,-358.671	1/1:187:0,182,3:0:0:182,3:6307,108:-567.399,-54.7875,0,-558.586,-45.9483,-557.683	1/2:181:0,63,116:0:0:63,116:2196,4090:-511.639,-333.05,-314.085,-178.628,0,-143.708	1/1:86:0,86,0:0:0:86,0:2974,0:-267.896,-25.8886,0,-267.896,-25.8886,-267.896	1/1:43:0,43,0:0:0:43,0:1463,0:-131.961,-12.9443,0,-131.961,-12.9443,-131.961	1/2:71:0,37,34:0:0:37,34:1273,1168:-198.574,-95.1854,-84.0473,-103.732,0,-93.4971	1/2:63:0,33,30:0:0:33,30:1139,1042:-177.592,-85.0571,-75.1231,-92.8807,0,-83.8498	1/1:75:0,74,1:0:0:74,1:2521,36:-226.784,-22.2762,0,-223.846,-18.979,-223.545	1/2:71:0,26,45:0:0:26,45:901,1532:-197.852,-124.619,-116.792,-73.5771,0,-60.0308	1/1:52:0,51,0:0:0:51,0:1766,0:-158.862,-15.3525,0,-158.862,-15.3525,-158.862	1/1:57:0,56,0:0:0:56,0:1950,0:-175.418,-16.8577,0,-175.418,-16.8577,-175.418	1/2:45:0,22,23:0:0:22,23:742,798:-125.342,-65.2129,-58.5903,-60.4706,0,-53.5469	1/2:42:0,20,22:0:0:20,22:702,752:-118.504,-61.3715,-55.3509,-57.4791,0,-50.8565	1/2:292:0,128,164:0:0:128,164:4417,5783:-830.047,-471.219,-432.687,-359.177,0,-309.808	1/1:163:0,163,0:0:0:163,0:5697,0:-512.774,-49.0679,0,-512.774,-49.0679,-512.774	1/2:142:1,44,96:1:36:44,96:1543,3393:-398.653,-273.39,-263.082,-122.618,0,-96.6568	1/2:187:0,65,122:0:0:65,122:2279,4322:-537.882,-352.428,-332.861,-185.807,0,-149.081	1/1:136:0,134,1:0:0:134,1:4680,36:-421.016,-40.338,0,-418.078,-37.3956,-417.777	1/1:38:0,38,0:0:0:38,0:1304,0:-117.655,-11.4391,0,-117.655,-11.4391,-117.655	1/2:274:0,127,145:0:0:127,145:4451,5128:-779.88,-417.694,-379.464,-362.217,0,-318.568	1/1:228:0,227,1:0:0:227,1:7890,36:-709.792,-68.3338,0,-706.855,-65.0366,-706.554	1/1:34:0,34,0:0:0:34,0:1185,0:-106.954,-10.235,0,-106.954,-10.235,-106.954	1/1:277:0,275,1:0:0:275,1:9669,36:-869.879,-82.7833,0,-866.941,-79.7908,-866.64	1/2:170:0,93,75:0:0:93,75:3240,2687:-482.611,-219.137,-191.141,-263.473,0,-240.896	1/1:150:0,147,1:0:0:147,1:5073,36:-456.389,-44.2514,0,-453.452,-41.3024,-453.151	1/2:7:0,4,3:0:0:4,3:140,108:-20.5573,-9.17208,-7.96796,-11.7407,0,-10.8377	1/1:32:0,31,0:0:0:31,0:1081,0:-97.117,-9.33193,0,-97.117,-9.33193,-97.117	1/1:3:0,3,0:0:0:3,0:107,0:-9.98217,-0.90309,0,-9.98217,-0.90309,-9.98217	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:10:0,10,0:0:0:10,0:341,0:-31.0198,-3.0103,0,-31.0198,-3.0103,-31.0198	1/2:186:0,96,88:0:0:96,88:3304,3080:-518.918,-250.577,-221.678,-268.329,0,-241.838	1/2:177:0,86,91:0:0:86,91:3026,3195:-506.714,-260.381,-234.492,-246.684,0,-219.291	1/1:64:0,64,0:0:0:64,0:2223,0:-200.335,-19.2659,0,-200.335,-19.2659,-200.335	1/1:9:0,9,0:0:0:9,0:314,0:-28.5964,-2.70927,0,-28.5964,-2.70927,-28.5964	1/2:114:0,60,53:0:0:60,53:2109,1896:-326.287,-154.623,-136.561,-171.678,0,-155.723	1/1:41:0,41,0:0:0:41,0:1431,0:-129.086,-12.3422,0,-129.086,-12.3422,-129.086	1/1:176:0,170,1:0:0:170,1:5981,36:-538.07,-51.1751,0,-535.132,-48.233,-534.831	1/1:95:0,92,3:0:0:92,3:3138,108:-282.291,-27.6948,0,-273.479,-18.5227,-272.576	1/1:59:0,59,0:0:0:59,0:2054,0:-185.128,-17.7608,0,-185.128,-17.7608,-185.128	1/2:82:0,48,34:0:0:48,34:1670,1188:-232.768,-96.9871,-82.5377,-136.13,0,-125.895	1/2:169:0,100,68:0:0:100,68:3533,2422:-485.189,-197.464,-167.361,-287.778,0,-267.308	1/1:201:0,200,0:0:0:200,0:6985,0:-628.41,-60.206,0,-628.41,-60.206,-628.41	1/1:132:0,131,0:0:0:131,0:4569,0:-411.081,-39.4349,0,-411.081,-39.4349,-411.081	1/2:164:0,91,72:0:0:91,72:3192,2541:-466.707,-206.946,-179.552,-259.792,0,-238.118	1/1:145:0,144,0:0:0:144,0:5057,0:-455,-43.3483,0,-455,-43.3483,-455	1/2:7:0,4,3:0:0:4,3:143,104:-20.4659,-8.79971,-7.59559,-12.0173,0,-11.1142	1/1:174:0,172,1:0:0:172,1:6005,36:-540.259,-51.7772,0,-537.321,-48.7848,-537.02	1/1:83:0,83,0:0:0:83,0:2843,0:-256.11,-24.9855,0,-256.11,-24.9855,-256.11	1/2:24:0,12,12:0:0:12,12:424,428:-69.7754,-35.2464,-31.6341,-34.8837,0,-31.2714	1/1:191:0,191,0:0:0:191,0:6630,0:-596.526,-57.4967,0,-596.526,-57.4967,-596.526	1/2:82:0,38,44:0:0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chr11	25690379	.	G	A	14599.7	PASS	AB=0.473438;ABP=14.777;AC=40;AF=0.215054;AN=186;AO=912;CIGAR=1X;DP=4088;DPB=4088;DPRA=1.21039;EPP=1983.39;EPPR=6897.44;GTI=0;LEN=1;MEANALT=1;MQM=59.2346;MQMR=53.7367;NS=93;NUMALT=1;ODDS=0.00581806;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32447;QR=111445;RO=3175;RPL=0;RPP=1983.39;RPPR=6897.44;RPR=912;RUN=1;SAF=0;SAP=1983.39;SAR=912;SRF=0;SRP=6897.44;SRR=3175;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:776:0:0:0,-6.62266,-69.0528	0/1:31:13,18:13:464:18:648:-49.2846,0,-32.4807	0/0:162:162,0:162:5751:0:0:0,-48.7669,-515.357	0/1:67:41,26:41:1421:26:936:-64.3905,0,-107.815	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58923	0/0:21:21,0:21:756:0:0:0,-6.32163,-67.6204	0/0:49:49,0:49:1707:0:0:0,-14.7505,-153.68	0/0:27:27,0:27:968:0:0:0,-8.12781,-86.8368	0/1:44:18,26:18:640:26:924:-70.2323,0,-44.3638	0/0:43:43,0:43:1482:0:0:0,-12.9443,-133.246	0/0:43:42,1:42:1477:1:36:0,-9.34601,-129.445	0/1:83:44,39:44:1556:39:1388:-100.163,0,-114.75	0/1:55:37,18:37:1312:18:648:-42.0952,0,-101.547	0/0:35:35,0:35:1219:0:0:0,-10.536,-108.824	0/1:49:27,22:27:959:22:780:-55.7726,0,-71.7273	0/0:40:40,0:40:1407:0:0:0,-12.0412,-126.379	0/1:34:17,17:17:604:17:612:-44.8399,0,-43.7781	0/1:24:15,9:15:536:9:320:-21.8643,0,-41.232	0/1:24:15,9:15:536:9:316:-21.5364,0,-41.0397	0/1:41:26,15:26:924:15:540:-36.5943,0,-70.9946	0/0:62:62,0:62:2156:0:0:0,-18.6639,-193.603	0/1:42:4,38:4:144:38:1340:-108.165,0,-0.666636	0/1:40:26,14:26:909:14:500:-33.295,0,-69.7733	0/0:29:29,0:29:1020:0:0:0,-8.72987,-90.8603	0/0:22:22,0:22:771:0:0:0,-6.62266,-69.4891	0/1:91:53,38:53:1865:38:1328:-92.4112,0,-140.599	0/0:57:57,0:57:1976:0:0:0,-17.1587,-176.354	0/0:23:23,0:23:802:0:0:0,-6.92369,-72.3633	0/0:74:74,0:74:2574:0:0:0,-22.2762,-231.594	0/1:56:38,18:38:1347:18:648:-41.7942,0,-103.366	0/0:47:47,0:47:1651:0:0:0,-14.1484,-148.601	.:.:.:.:.:.:.:.	0/0:18:18,0:18:618:0:0:0,-5.41854,-55.6096	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.1791	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1484	0/0:20:20,0:20:708:0:0:0,-6.0206,-63.2665	0/1:157:79,78:79:2759:78:2765:-201.709,0,-201.156	0/1:34:16,18:16:568:18:644:-48.0556,0,-40.8935	0/0:41:41,0:41:1444:0:0:0,-12.3422,-129.555	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5286	0/1:54:29,25:29:1009:25:878:-63.0578,0,-74.6048	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.043	0/0:49:49,0:49:1727:0:0:0,-14.7505,-155.133	0/0:50:50,0:50:1748:0:0:0,-15.0515,-157.322	0/0:35:35,0:35:1198:0:0:0,-10.536,-107.507	0/1:28:20,8:20:679:8:288:-17.8386,0,-52.9804	0/1:29:9,20:9:320:20:708:-55.2909,0,-20.3432	0/0:62:62,0:62:2195:0:0:0,-18.6639,-197.472	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.464	0/1:58:33,25:33:1146:25:892:-62.9202,0,-85.8285	0/0:46:46,0:46:1616:0:0:0,-13.8474,-145.507	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.86378	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.374	0/0:11:11,0:11:377:0:0:0,-3.31133,-34.2479	0/1:8:1,7:1:36:7:248:-20.2381,0,-1.18099	0/0:64:64,0:64:2250:0:0:0,-19.2659,-202.43	0/1:24:10,14:10:345:14:500:-38.0829,0,-24.0381	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2893	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.2581	0/1:72:40,32:40:1423:32:1152:-82.316,0,-106.429	0/1:5:2,3:2:72:3:108:-8.40699,0,-5.32664	0/1:102:49,53:49:1692:53:1875:-137.961,0,-121.664	0/0:68:67,1:67:2316:1:36:0,-16.8718,-204.853	0/1:28:22,6:22:784:6:216:-11.3389,0,-62.3555	0/0:27:27,0:27:939:0:0:0,-8.12781,-84.6143	0/1:73:43,30:43:1515:30:1072:-74.8173,0,-113.862	0/0:67:66,0:66:2301:0:0:0,-19.868,-206.411	0/1:25:16,9:16:544:9:311:-20.798,0,-41.6849	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.3838	0/0:41:41,0:41:1438:0:0:0,-12.3422,-129.562	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.1968	0/0:62:62,0:62:2200:0:0:0,-18.6639,-197.534	0/0:30:30,0:30:1064:0:0:0,-9.0309,-95.8184	0/0:78:78,0:78:2748:0:0:0,-23.4803,-246.393	0/1:36:17,19:17:595:19:684:-51.0248,0,-42.9203	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.0677	0/1:33:15,18:15:536:18:640:-47.9953,0,-37.1585	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.2068	0/1:36:19,17:19:672:17:603:-43.7399,0,-49.7094	0/0:37:37,0:37:1300:0:0:0,-11.1381,-116.972	0/0:71:71,0:71:2478:0:0:0,-21.3731,-222.613	0/1:53:29,24:29:999:24:846:-60.4748,0,-74.1568	0/0:54:53,1:53:1855:1:36:0,-12.6573,-163.146	0/0:43:43,0:43:1475:0:0:0,-12.9443,-132.11	0/1:92:44,48:44:1507:48:1720:-127.249,0,-107.968	0/0:20:20,0:20:720:0:0:0,-6.0206,-64.6001	0/1:68:41,27:41:1456:27:968:-66.9144,0,-110.192	0/1:58:24,34:24:852:34:1200:-90.8378,0,-58.8566	0/0:34:34,0:34:1185:0:0:0,-10.235,-106.205	0/1:88:45,43:45:1576:43:1535:-111.905,0,-115.249	0/1:60:21,39:21:752:39:1378:-106.199,0,-49.801	0/0:66:66,0:66:2307:0:0:0,-19.868,-207.331	0/0:80:80,0:80:2776:0:0:0,-24.0824,-249.729
chr11	25690439	.	T	A	67904.6	PASS	AB=0.522358;ABP=11.555;AC=146;AF=0.784946;AN=186;AO=3232;CIGAR=1X;DP=4176;DPB=4176;DPRA=0;EPP=7021.21;EPPR=2050.71;GTI=0;LEN=1;MEANALT=1.01075;MQM=53.4264;MQMR=59.2047;NS=93;NUMALT=1;ODDS=0.389374;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=115569;QR=33784;RO=943;RPL=3232;RPP=7021.21;RPPR=2050.71;RPR=0;RUN=1;SAF=0;SAP=7021.21;SAR=3232;SRF=0;SRP=2050.71;SRR=943;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:856:-76.2002,-7.22472,0	0/1:33:20,13:20:716:13:468:-32.2359,0,-54.7975	1/1:163:0,163:0:0:163:5818:-521.212,-49.0679,0	0/1:69:29,40:29:1029:40:1432:-108.148,0,-72.1501	1/1:1:0,1:0:0:1:32:-3.19568,-0.30103,0	1/1:20:0,20:0:0:20:716:-64.0337,-6.0206,0	1/1:49:0,49:0:0:49:1756:-157.959,-14.7505,0	1/1:27:0,27:0:0:27:964:-86.1673,-8.12781,0	0/1:46:28,18:28:1004:18:633:-43.12,0,-76.8229	1/1:42:0,42:0:0:42:1508:-135.63,-12.6433,0	1/1:42:1,41:1:36:41:1476:-129.266,-9.04499,0	0/1:83:39,44:39:1404:44:1584:-117.224,0,-101.603	0/1:57:18,39:18:648:39:1400:-108.801,0,-41.4932	1/1:38:0,38:0:0:38:1360:-121.271,-11.4391,0	0/1:49:22,27:22:788:27:972:-72.8864,0,-56.4943	1/1:40:0,40:0:0:40:1424:-127.679,-12.0412,0	0/1:37:19,18:19:684:18:644:-46.4566,0,-50.414	0/1:24:9,15:9:324:15:540:-41.5888,0,-22.2278	0/1:23:8,15:8:288:15:536:-41.3407,0,-19.3259	0/1:41:15,26:15:540:26:936:-72.0722,0,-36.5943	1/1:65:0,65:0:0:65:2317:-207.571,-19.567,0	0/1:42:38,4:38:1368:4:144:-0.666636,0,-110.72	0/1:41:15,26:15:540:26:936:-71.9019,0,-36.5658	1/1:29:0,29:0:0:29:1040:-92.9668,-8.72987,0	1/1:21:0,21:0:0:21:733:-66.0663,-6.32163,0	0/1:92:39,53:39:1389:53:1908:-144.143,0,-97.57	1/1:59:0,59:0:0:59:2082:-185.908,-17.7608,0	1/1:22:0,22:0:0:22:792:-71.4649,-6.62266,0	1/1:72:0,72:0:0:72:2588:-232.64,-21.6742,0	0/1:60:21,39:21:756:39:1387:-106.132,0,-50.2605	1/1:48:0,48:0:0:48:1716:-154.316,-14.4494,0	.:.:.:.:.:.:.:.	1/1:17:0,17:0:0:17:612:-55.0703,-5.11751,0	1/1:4:0,4:0:0:4:144:-12.9071,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5105,-1.50515,0	1/1:22:0,22:0:0:22:792:-70.6662,-6.62266,0	0/1:161:82,79:82:2952:79:2840:-207.231,0,-217.251	0/1:35:18,17:18:648:17:604:-42.65,0,-48.1158	1/1:42:0,42:0:0:42:1512:-135.624,-12.6433,0	1/1:5:0,5:0:0:5:180:-16.5286,-1.50515,0	0/1:54:25,29:25:896:29:1025:-76.0355,0,-64.6823	1/1:36:0,36:0:0:36:1296:-116.193,-10.8371,0	1/1:51:0,51:0:0:51:1804:-161.225,-15.3525,0	1/1:51:0,51:0:0:51:1824:-164.186,-15.3525,0	1/1:36:0,36:0:0:36:1284:-113.897,-10.8371,0	0/1:27:8,19:8:288:19:680:-53.3809,0,-18.1396	0/1:29:19,10:19:684:10:360:-23.9209,0,-53.1251	1/1:63:0,63:0:0:63:2241:-201.571,-18.9649,0	1/1:51:0,51:0:0:51:1813:-163.081,-15.3525,0	0/1:58:24,34:24:860:34:1220:-92.0881,0,-60.2621	1/1:46:0,46:0:0:46:1656:-149.104,-13.8474,0	0/1:4:1,3:1:36:3:108:-8.86378,0,-2.39415	1/1:51:0,50:0:0:50:1780:-159.422,-15.0515,0	1/1:13:0,13:0:0:13:468:-40.97,-3.91339,0	0/1:9:7,2:7:252:2:72:-4.08897,0,-20.3019	1/1:64:0,64:0:0:64:2281:-204.985,-19.2659,0	0/1:24:15,9:15:540:9:320:-21.7654,0,-41.6833	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	1/1:7:0,7:0:0:7:252:-23.0225,-2.10721,0	1/1:27:0,27:0:0:27:972:-87.4238,-8.12781,0	0/1:73:32,41:32:1148:41:1476:-110.89,0,-81.6546	0/1:5:3,2:3:108:2:72:-5.32664,0,-8.40699	0/1:103:53,50:53:1889:50:1792:-130.251,0,-138.825	1/1:65:1,64:1:36:64:2277:-201.325,-15.9687,0	0/1:28:6,22:6:216:22:777:-61.7209,0,-11.3389	1/1:27:0,27:0:0:27:968:-87.2044,-8.12781,0	0/1:76:31,45:31:1116:45:1597:-120.289,0,-77.8734	1/1:69:0,69:0:0:69:2452:-220.237,-20.7711,0	0/1:26:9,17:9:309:17:608:-46.6523,0,-20.3139	1/1:33:0,33:0:0:33:1180:-106.119,-9.93399,0	1/1:42:0,42:0:0:42:1512:-136.201,-12.6433,0	0/1:7:3,4:3:108:4:144:-11.1968,0,-7.96796	1/1:63:0,63:0:0:63:2256:-202.384,-18.9649,0	1/1:33:0,33:0:0:33:1172:-105.49,-9.93399,0	1/1:79:0,79:0:0:79:2809:-251.423,-23.7814,0	0/1:36:19,17:19:684:17:604:-43.7322,0,-51.0248	1/1:27:0,27:0:0:27:972:-86.7259,-8.12781,0	0/1:34:21,13:21:726:13:463:-30.7069,0,-55.4056	0/1:7:1,6:1:36:6:216:-17.2068,0,-1.49106	0/1:38:19,19:19:684:19:684:-50.1123,0,-50.3588	1/1:39:0,39:0:0:39:1389:-124.568,-11.7402,0	1/1:71:0,71:0:0:71:2544:-228.414,-21.3731,0	0/1:56:26,30:26:932:30:1072:-78.1004,0,-67.3127	1/1:58:1,57:1:36:57:2044:-179.972,-13.8615,0	1/1:45:0,45:0:0:45:1612:-142.032,-13.5464,0	0/1:95:49,46:49:1749:46:1652:-120.016,0,-128.979	1/1:20:0,20:0:0:20:711:-63.7941,-6.0206,0	0/1:69:29,40:29:1040:40:1440:-108.287,0,-73.0455	0/1:66:36,30:36:1292:30:1080:-76.0247,0,-96.6973	1/1:37:0,37:0:0:37:1320:-118.288,-11.1381,0	0/1:90:43,47:43:1548:47:1676:-123.428,0,-112.474	0/1:61:41,20:41:1457:20:720:-46.6234,0,-113.004	1/1:65:0,65:0:0:65:2324:-208.145,-19.567,0	1/1:81:0,81:0:0:81:2900:-260.294,-24.3834,0
chr11	25708352	.	G	A	182393	PASS	AB=0.50486;ABP=4.04456;AC=147;AF=0.781915;AN=188;AO=8551;CIGAR=1X;DP=11070;DPB=11070;DPRA=29.7473;EPP=18501.8;EPPR=5444.75;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.6254;MQMR=59.6334;NS=94;NUMALT=1;ODDS=0.415726;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=305852;QR=89320;RO=2518;RPL=8;RPP=18501.8;RPPR=5444.75;RPR=8543;RUN=1;SAF=0;SAP=18571.3;SAR=8551;SRF=0;SRP=5470.78;SRR=2518;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:78:0,78:0:0:78:2780:-250.344,-23.4803,0	0/1:152:76,76:76:2707:76:2710:-198.308,0,-198.073	1/1:88:0,88:0:0:88:3132:-281.741,-26.4906,0	0/1:252:146,106:146:5201:106:3812:-267.137,0,-392.349	1/1:78:0,78:0:0:78:2799:-252.144,-23.4803,0	1/1:73:0,73:0:0:73:2615:-235.303,-21.9752,0	1/1:166:0,166:0:0:166:5930:-533.79,-49.971,0	1/1:159:0,159:0:0:159:5686:-511.801,-47.8638,0	0/1:112:50,62:50:1754:62:2223:-166.603,0,-124.427	1/1:101:0,101:0:0:101:3593:-323.567,-30.404,0	1/1:87:0,87:0:0:87:3114:-280.307,-26.1896,0	0/1:102:54,48:54:1932:48:1712:-123.318,0,-143.44	0/1:121:63,58:63:2239:58:2073:-150.398,0,-165.315	1/1:119:0,119:0:0:119:4221:-380.049,-35.8226,0	0/1:95:39,56:39:1384:56:2007:-151.925,0,-96.1536	1/1:85:0,85:0:0:85:3052:-274.715,-25.5876,0	0/1:122:62,60:62:2183:60:2143:-156.379,0,-159.958	0/1:134:62,72:62:2211:72:2583:-192.169,0,-158.913	0/1:64:30,34:30:1052:34:1207:-89.6694,0,-75.6683	0/1:154:61,93:61:2132:93:3332:-253.728,0,-145.749	1/1:201:0,201:0:0:201:7215:-649.373,-60.507,0	0/1:68:48,20:48:1716:20:720:-44.5007,0,-134.227	0/1:111:39,72:39:1366:72:2567:-197.863,0,-89.8223	1/1:159:0,159:0:0:159:5686:-511.196,-47.8638,0	1/1:58:0,58:0:0:58:2080:-187.466,-17.4597,0	0/1:382:201,180:201:7123:180:6421:-463.062,0,-526.096	1/1:262:2,260:2:72:260:9302:-830.159,-72.0331,0	1/1:35:1,34:1:36:34:1224:-106.803,-6.93778,0	1/1:209:0,209:0:0:209:7473:-672.601,-62.9153,0	0/1:175:69,106:69:2433:106:3808:-290.218,0,-166.504	1/1:205:0,205:0:0:205:7351:-661.629,-61.7112,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:20:0,20:0:0:20:716:-64.7318,-6.0206,0	1/1:12:0,12:0:0:12:432:-39.176,-3.61236,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:265:110,155:110:3908:155:5533:-418.304,0,-272.131	0/1:108:51,57:51:1807:57:2043:-151.63,0,-130.256	1/1:111:0,111:0:0:111:3967:-356.992,-33.4143,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:151:70,81:70:2504:81:2882:-214.139,0,-180.153	1/1:65:0,65:0:0:65:2340:-210.841,-19.567,0	1/1:137:0,137:0:0:137:4907:-441.715,-41.2411,0	1/1:105:0,105:0:0:105:3763:-338.84,-31.6082,0	1/1:89:0,89:0:0:89:3192:-287.296,-26.7917,0	0/1:128:70,58:70:2486:58:2084:-148.518,0,-185.458	0/1:137:72,65:72:2572:65:2308:-166.69,0,-190.488	1/1:151:3,148:3:108:148:5287:-465.773,-35.3804,0	1/1:147:0,147:0:0:147:5266:-474.054,-44.2514,0	0/1:114:67,47:67:2361:47:1680:-117.167,0,-177.842	1/1:210:2,208:2:72:208:7429:-661.809,-56.3796,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:168:0,168:0:0:168:5995:-539.604,-50.573,0	1/1:31:0,31:0:0:31:1116:-100.729,-9.33193,0	0/1:14:10,4:10:356:4:135:-8.26809,0,-28.1586	1/1:149:0,149:0:0:149:5326:-479.42,-44.8535,0	0/1:64:27,37:27:959:37:1319:-99.7429,0,-67.3312	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:22:0,22:0:0:22:788:-71.2366,-6.62266,0	1/1:95:0,95:0:0:95:3371:-303.599,-28.5979,0	0/1:137:62,75:62:2216:75:2677:-199.836,0,-158.461	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26657	0/1:251:125,126:125:4410:126:4511:-330.503,0,-321.443	1/1:248:4,244:4:140:244:8737:-773.362,-61.7109,0	0/1:78:45,33:45:1599:33:1184:-83.3788,0,-120.714	1/1:98:0,98:0:0:98:3515:-316.556,-29.5009,0	0/1:202:95,107:95:3388:107:3832:-284.227,0,-244.057	1/1:98:1,97:1:36:97:3473:-309.164,-25.9027,0	0/1:42:16,26:16:576:26:936:-71.9116,0,-39.5179	1/1:79:0,79:0:0:79:2805:-252.449,-23.7814,0	1/1:136:0,136:0:0:136:4860:-437.548,-40.9401,0	0/1:29:14,15:14:496:15:536:-39.8449,0,-36.242	1/1:90:0,90:0:0:90:3223:-290.048,-27.0927,0	1/1:98:0,98:0:0:98:3508:-315.641,-29.5009,0	1/1:316:0,316:0:0:316:11307:-1016.93,-95.1255,0	0/1:213:106,107:106:3782:107:3810:-278.952,0,-276.457	1/1:114:0,114:0:0:114:4076:-366.731,-34.3174,0	0/1:107:54,53:54:1914:53:1904:-139.419,0,-140.292	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:173:100,73:100:3567:73:2620:-183.95,0,-269.137	1/1:107:0,107:0:0:107:3826:-344.342,-32.2102,0	1/1:304:0,304:0:0:304:10877:-978.737,-91.5131,0	0/1:150:80,70:80:2836:70:2516:-181.534,0,-210.311	1/1:102:1,101:1:36:101:3618:-322.219,-27.1068,0	1/1:122:0,122:0:0:122:4369:-393.372,-36.7257,0	0/1:203:93,110:93:3264:110:3910:-290.823,0,-232.829	1/1:56:1,55:1:36:55:1971:-174.021,-13.2594,0	0/1:97:52,45:52:1835:45:1612:-116.134,0,-136.117	0/1:96:42,54:42:1504:54:1930:-145.032,0,-106.734	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	0/1:120:67,53:67:2343:53:1873:-132.706,0,-174.993	0/1:101:59,42:59:2092:42:1500:-104.878,0,-158.141	1/1:137:4,133:4:144:133:4773:-416.401,-27.9275,0	1/1:159:0,159:0:0:159:5706:-513.605,-47.8638,0
chr11	25914227	.	TGA	GGG,TGG	98565	PASS	AB=0.431034,0.568081;ABP=96.4585,94.0777;AC=148,38;AF=0.795699,0.204301;AN=186;AO=3550,1304;CIGAR=1X1M1X,2M1X;DP=4857;DPB=4858.33;DPRA=0,1.69988;EPP=7711.74,2825.93;EPPR=0;GTI=4;LEN=3,1;MEANALT=1.5914,2.05769;MQM=47.0349,59.6127;MQMR=0;NS=93;NUMALT=2;ODDS=0.204346;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=31.5,31.5;PQR=0;PRO=0;QA=122488,45659;QR=0;RO=0;RPL=0,0;RPP=7711.74,2834.61;RPPR=0;RPR=3550,1304;RUN=1,1;SAF=0,1;SAP=7711.74,2825.93;SAR=3550,1303;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27,0:0:0:27,0:923,0:-82.6898,-8.12781,0,-82.6898,-8.12781,-82.6898	1/2:22:0,15,7:0:0:15,7:517,252:-62.0847,-20.9217,-16.4063,-41.516,0,-39.4088	1/1:132:0,131,1:0:0:131,1:4536,36:-404.469,-39.4349,0,-401.539,-36.1467,-401.238	1/2:145:0,60,85:0:0:60,85:2094,2981:-411,-242.921,-224.859,-168.427,0,-142.839	1/1:19:0,19,0:0:0:19,0:675,0:-60.6863,-5.71957,0,-60.6863,-5.71957,-60.6863	1/1:15:0,15,0:0:0:15,0:517,0:-46.6345,-4.51545,0,-46.6345,-4.51545,-46.6345	1/1:80:0,80,0:0:0:80,0:2745,0:-244.071,-24.0824,0,-244.071,-24.0824,-244.071	1/1:44:0,43,1:0:0:43,1:1487,32:-133.072,-12.9443,0,-130.497,-10.0496,-130.196	1/2:71:0,32,39:0:0:32,39:1083,1364:-198.669,-111.287,-101.654,-87.7245,0,-75.9843	1/1:48:0,48,0:0:0:48,0:1675,0:-149.879,-14.4494,0,-149.879,-14.4494,-149.879	1/1:39:0,39,0:0:0:39,0:1353,0:-119.79,-11.7402,0,-119.79,-11.7402,-119.79	1/2:79:0,35,44:0:0:35,44:1223,1539:-223.88,-125.543,-115.007,-98.6844,0,-85.4391	1/2:59:0,29,30:0:0:29,30:969,1034:-162.191,-84.3025,-75.5726,-78.2264,0,-69.1955	1/1:48:0,47,1:0:0:47,1:1596,36:-142.299,-14.1484,0,-139.366,-10.8563,-139.065	1/2:44:0,21,23:0:0:21,23:721,792:-122.747,-64.6681,-58.3465,-58.4213,0,-51.4976	1/1:61:0,61,0:0:0:61,0:2062,0:-184.844,-18.3628,0,-184.844,-18.3628,-184.844	1/2:32:0,18,14:0:0:18,14:621,487:-90.1381,-39.944,-34.5254,-50.5399,0,-46.3255	1/2:26:0,10,16:0:0:10,16:327,568:-72.5845,-46.6354,-43.6251,-26.2836,0,-21.4672	1/2:12:0,4,8:0:0:4,8:141,288:-35.275,-23.8592,-22.655,-11.7695,0,-9.36126	1/2:85:0,33,52:0:0:33,52:1148,1828:-241.488,-149.084,-139.15,-92.6932,0,-77.0397	1/1:97:0,97,0:0:0:97,0:3342,0:-298.644,-29.1999,0,-298.644,-29.1999,-298.644	1/2:106:0,37,69:0:0:37,69:1292,2409:-300.028,-196.29,-185.152,-104.084,0,-83.313	1/2:87:0,27,60:0:0:27,60:928,2104:-245.736,-171.564,-163.436,-74.5151,0,-56.4533	1/1:35:0,35,0:0:0:35,0:1227,0:-109.609,-10.5361,0,-109.609,-10.5361,-109.609	1/1:33:0,33,0:0:0:33,0:1160,0:-103.864,-9.93399,0,-103.864,-9.93399,-103.864	1/2:116:0,38,77:0:0:38,77:1317,2716:-326.904,-221.193,-209.754,-105.804,0,-82.6248	1/1:172:0,169,2:0:0:169,2:5778,72:-514.532,-50.8741,0,-508.662,-44.9506,-508.06	1/1:23:0,23,0:0:0:23,0:813,0:-73.0428,-6.92369,0,-73.0428,-6.92369,-73.0428	1/1:164:0,162,2:0:0:162,2:5604,68:-498.647,-48.7669,0,-493.169,-42.9508,-492.567	1/2:77:0,29,48:0:0:29,48:985,1698:-217.847,-138.651,-129.921,-79.5398,0,-65.0904	1/1:59:0,58,1:0:0:58,1:2000,32:-177.061,-17.4597,0,-174.483,-14.5615,-174.182	1/2:7:0,3,4:0:0:3,4:103,135:-19.5951,-11.2778,-10.3747,-8.65702,0,-7.4529	1/1:12:0,12,0:0:0:12,0:393,0:-35.4881,-3.61236,0,-35.4881,-3.61236,-35.4881	1/1:1:0,1,0:0:0:1,0:36,0:-3.57877,-0.30103,0,-3.57877,-0.30103,-3.57877	1/1:3:0,3,0:0:0:3,0:106,0:-9.84108,-0.90309,0,-9.84108,-0.90309,-9.84108	1/1:11:0,10,1:0:0:10,1:358,32:-32.0799,-3.0103,0,-29.5048,-0.112017,-29.2038	1/2:136:0,61,75:0:0:61,75:2106,2627:-383.094,-214.09,-195.727,-169.349,0,-146.772	1/2:60:0,26,34:0:0:26,34:893,1207:-170.458,-98.6864,-90.8597,-72.1182,0,-61.8832	1/1:37:0,37,0:0:0:37,0:1280,0:-114.349,-11.1381,0,-114.349,-11.1381,-114.349	.:.:.:.:.:.:.:.	1/2:83:0,40,43:0:0:40,43:1408,1497:-235.303,-122.069,-110.028,-113.583,0,-100.638	1/1:21:0,21,0:0:0:21,0:696,0:-62.1213,-6.32163,0,-62.1213,-6.32163,-62.1213	1/1:67:0,67,0:0:0:67,0:2302,0:-205.009,-20.169,0,-205.009,-20.169,-205.009	1/1:40:0,40,0:0:0:40,0:1396,0:-122.706,-12.0412,0,-122.706,-12.0412,-122.706	1/1:33:0,33,0:0:0:33,0:1139,0:-101.744,-9.93399,0,-101.744,-9.93399,-101.744	1/2:80:0,25,55:0:0:25,55:866,1941:-227.043,-158.407,-150.881,-68.9791,0,-52.4224	1/2:59:0,28,31:0:0:28,31:975,1059:-164.601,-86.251,-77.8221,-78.6927,0,-69.3608	1/1:88:0,88,0:0:0:88,0:3062,0:-273.218,-26.4906,0,-273.218,-26.4906,-273.218	1/1:41:0,41,0:0:0:41,0:1445,0:-128.748,-12.3422,0,-128.748,-12.3422,-128.748	1/2:47:0,21,26:0:0:21,26:718,924:-132.721,-75.6427,-69.3211,-57.4223,0,-49.5955	1/1:61:0,60,1:0:0:60,1:2071,36:-184.048,-18.0618,0,-181.166,-14.8267,-180.865	1/1:4:0,4,0:0:0:4,0:139,0:-12.7648,-1.20412,0,-12.7648,-1.20412,-12.7648	1/1:28:0,28,0:0:0:28,0:976,0:-87.4863,-8.42884,0,-87.4863,-8.42884,-87.4863	1/1:20:0,20,0:0:0:20,0:690,0:-61.7233,-6.0206,0,-61.7233,-6.0206,-61.7233	1/2:10:0,2,8:0:0:2,8:72,288:-29.6985,-23.8592,-23.2571,-6.1976,0,-3.78936	1/1:52:0,52,0:0:0:52,0:1763,0:-156.949,-15.6536,0,-156.949,-15.6536,-156.949	1/2:39:0,10,29:0:0:10,29:342,1008:-109.492,-82.2889,-79.2786,-27.5417,0,-18.8118	1/1:4:0,4,0:0:0:4,0:144,0:-13.1972,-1.20412,0,-13.1972,-1.20412,-13.1972	1/1:2:0,2,0:0:0:2,0:6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chr11	25917190	.	C	G	42615.6	PASS	AB=0.50696;ABP=5.09591;AC=43;AF=0.228723;AN=188;AO=2550;CIGAR=1X;DP=10973;DPB=10973;DPRA=1.0807;EPP=5540.26;EPPR=18276;GTI=1;LEN=1;MEANALT=1.01961;MQM=52.3557;MQMR=59.9937;NS=94;NUMALT=1;ODDS=0.28533;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91027;QR=301393;RO=8419;RPL=0;RPP=5540.26;RPPR=18284.6;RPR=2550;RUN=1;SAF=2550;SAP=5540.26;SAR=0;SRF=8418;SRP=18276;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:146:60,86:60:2152:86:3077:-233.065,0,-149.997	0/0:231:231,0:231:8225:0:0:0,-69.5379,-740.266	0/1:255:132,123:132:4740:123:4356:-313.646,0,-349.994	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:49:48,1:48:1720:1:36:0,-11.1522,-151.487	0/0:179:179,0:179:6396:0:0:0,-53.8844,-575.73	0/0:201:201,0:201:7173:0:0:0,-60.507,-645.627	0/1:119:45,74:45:1616:74:2637:-201.405,0,-109.907	0/0:181:181,0:181:6477:0:0:0,-54.4864,-583.014	0/0:108:108,0:108:3879:0:0:0,-32.5112,-349.303	0/1:122:49,73:49:1764:73:2616:-198.473,0,-122.318	0/1:107:48,59:48:1720:59:2088:-155.932,0,-122.875	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:127:70,57:70:2512:57:2052:-145.444,0,-188.101	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/1:121:62,59:62:2216:59:2120:-154.117,0,-163.28	0/1:92:43,49:43:1535:49:1760:-130.799,0,-110.748	0/1:86:47,39:47:1684:39:1396:-100.051,0,-125.958	0/1:270:137,131:137:4896:131:4700:-339.002,0,-359.76	0/0:168:168,0:168:6016:0:0:0,-50.573,-541.545	0/1:95:22,73:22:784:73:2586:-200.885,0,-42.2861	0/1:92:31,61:31:1093:61:2188:-168.485,0,-70.9829	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/1:450:247,203:247:8834:203:7199:-506.353,0,-659.58	0/0:227:227,0:227:8140:0:0:0,-68.3338,-732.484	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/0:346:346,0:346:12384:0:0:0,-104.156,-1114.39	0/1:92:23,69:23:816:69:2450:-192.348,0,-46.067	0/0:162:162,0:162:5808:0:0:0,-48.7669,-522.832	1/1:12:0,12:0:0:12:432:-39.0927,-3.61236,0	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1803	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:295:165,130:165:5928:130:4657:-327.497,0,-444.822	0/1:175:96,79:96:3429:79:2787:-196.844,0,-256.142	0/0:96:96,0:96:3423:0:0:0,-28.8989,-308.284	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:163:83,80:83:2988:80:2860:-207.327,0,-220.083	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:120:119,0:119:4236:0:0:0,-35.8226,-381.06	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/1:60:31,29:31:1101:29:1044:-75.4492,0,-81.3366	0/1:160:99,61:99:3552:61:2165:-146.827,0,-271.723	0/0:174:174,0:174:6219:0:0:0,-52.3792,-559.799	0/0:160:159,0:159:5700:0:0:0,-47.8638,-512.757	0/1:170:82,88:82:2940:88:3127:-227.321,0,-213.659	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.893	0/1:6:1,5:1:36:5:161:-12.9417,0,-1.79209	0/0:115:114,1:114:4096:1:32:0,-31.4191,-365.625	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.827	0/1:26:17,9:17:604:9:324:-21.6504,0,-46.8638	0/0:123:123,0:123:4396:0:0:0,-37.0267,-395.814	0/1:78:44,34:44:1576:34:1224:-86.5255,0,-118.651	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919	0/1:157:80,77:80:2880:77:2745:-198.369,0,-212.174	0/1:7:5,2:5:180:2:72:-4.70058,0,-14.4449	0/1:171:95,76:95:3391:76:2736:-193.186,0,-253.929	0/0:132:131,1:131:4688:1:36:0,-36.1529,-418.498	0/1:95:47,48:47:1692:48:1719:-124.868,0,-123.969	0/0:80:79,1:79:2832:1:36:0,-20.4993,-251.531	0/1:187:95,92:95:3408:92:3289:-237.941,0,-250.635	0/0:84:83,1:83:2980:1:36:0,-21.7035,-264.849	0/1:46:25,21:25:884:21:756:-54.3065,0,-66.031	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/0:173:173,0:173:6185:0:0:0,-52.0782,-556.745	0/1:27:10,17:10:352:17:612:-47.0543,0,-23.8904	0/0:91:90,1:90:3228:1:36:0,-23.7955,-287.143	0/0:116:116,0:116:4156:0:0:0,-34.9195,-374.223	0/0:242:242,0:242:8642:0:0:0,-72.8493,-777.774	0/1:162:90,72:90:3236:72:2565:-181.188,0,-242.694	0/0:184:182,2:182:6520:2:72:0,-48.5528,-580.046	0/1:119:53,66:53:1900:66:2342:-175.179,0,-135.455	1/1:15:1,14:1:36:14:504:-42.0297,-0.917175,0	0/1:124:68,56:68:2444:56:2008:-142.851,0,-182.887	0/0:151:150,1:150:5359:1:36:0,-41.8573,-478.845	0/0:280:280,0:280:10024:0:0:0,-84.2884,-902.096	0/1:134:66,68:66:2372:68:2436:-177.615,0,-173.4	0/0:101:101,0:101:3623:0:0:0,-30.404,-326.274	0/0:135:135,0:135:4852:0:0:0,-40.639,-436.832	0/0:209:208,1:208:7443:1:36:0,-59.3288,-666.328	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/1:86:34,52:34:1215:52:1868:-142.415,0,-83.7672	0/1:103:45,58:45:1620:58:2069:-155.265,0,-115.084	0/0:85:84,1:84:3024:1:36:0,-21.9893,-268.791	0/1:134:59,75:59:2099:75:2676:-198.943,0,-148.841	0/1:94:33,61:33:1176:61:2196:-168.545,0,-77.8509	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.186	0/0:161:161,0:161:5760:0:0:0,-48.4658,-518.513
chr11	26013451	.	ATGTG	ATGTT,ATGTA	85470.4	PASS	AB=0.507361,0.483012;ABP=3.84151,7.43686;AC=147,41;AF=0.781915,0.218085;AN=188;AO=3015,853;CIGAR=4M1X,4M1X;DP=3898;DPB=3898;DPRA=0,1.07077;EPP=6190.27,1710.56;EPPR=6.91895;GTI=1;LEN=1,1;MEANALT=1.67021,2.29268;MQM=59.9685,59.9355;MQMR=60;NS=94;NUMALT=2;ODDS=2.72066;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=106810,30506;QR=142;RO=5;RPL=2973,836;RPP=6190.27,1710.56;RPPR=6.91895;RPR=42,17;RUN=1,1;SAF=0,0;SAP=6550,1855.28;SAR=3015,853;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26,0:0:0:26,0:924,0:-83.4777,-7.82678,0,-83.4777,-7.82678,-83.4777	1/2:27:0,13,13:0:0:13,13:468,468:-76.4497,-38.2606,-34.3472,-38.2606,0,-34.3472	1/1:62:0,62,0:0:0:62,0:2171,0:-195.652,-18.6639,0,-195.652,-18.6639,-195.652	1/2:99:0,54,44:0:0:54,44:1914,1572:-284.159,-128.233,-111.978,-155.998,0,-142.753	1/1:23:0,23,0:0:0:23,0:812,0:-73.4009,-6.92369,0,-73.4009,-6.92369,-73.4009	1/1:31:0,31,0:0:0:31,0:1100,0:-98.9394,-9.33193,0,-98.9394,-9.33193,-98.9394	1/1:37:0,37,0:0:0:37,0:1324,0:-119.462,-11.1381,0,-119.462,-11.1381,-119.462	1/1:91:0,90,0:0:0:90,0:3185,0:-286.532,-27.0927,0,-286.532,-27.0927,-286.532	1/2:63:0,30,32:0:0:30,32:1058,1144:-179.478,-93.3328,-84.3019,-86.1955,0,-76.5625	1/1:25:0,25,0:0:0:25,0:884,0:-79.8784,-7.52575,0,-79.8784,-7.52575,-79.8784	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:70:0,35,35:0:0:35,35:1260,1252:-205.254,-102.443,-91.9068,-103.169,0,-92.6334	1/2:45:0,31,13:0:0:31,13:1104,464:-127.944,-37.9553,-28.6234,-90.1155,0,-86.2021	1/1:18:0,18,0:0:0:18,0:640,0:-57.9293,-5.41854,0,-57.9293,-5.41854,-57.9293	1/2:40:0,21,19:0:0:21,19:748,684:-117.136,-56.1708,-49.8491,-61.3237,0,-55.6041	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/2:14:0,6,8:0:0:6,8:208,288:-40.7598,-23.8592,-22.053,-17.2529,0,-14.8447	1/2:22:0,15,7:0:0:15,7:540,252:-64.983,-20.9217,-16.4063,-44.4211,0,-42.3139	1/2:6:0,4,2:0:0:4,2:140,72:-17.6186,-6.23466,-5.03054,-11.7405,0,-11.1384	1/2:62:0,33,29:0:0:33,29:1180,1040:-181.401,-85.1845,-75.2505,-96.5741,0,-87.8442	1/1:59:0,59,0:0:0:59,0:2089,0:-188.278,-17.7608,0,-188.278,-17.7608,-188.278	1/2:57:0,9,48:0:0:9,48:320,1716:-166.354,-140.276,-137.567,-26.4331,0,-11.9836	1/2:65:1,26,37:1:31:26,37:924,1324:-180.533,-105.539,-100.199,-72.8647,0,-64.2135	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:58:0,57,0:0:0:57,0:2021,0:-181.87,-17.1587,0,-181.87,-17.1587,-181.87	1/2:101:0,51,47:0:0:51,47:1755,1684:-279.921,-137.395,-122.043,-142.573,0,-128.424	1/1:91:0,91,0:0:0:91,0:3248,0:-292.542,-27.3937,0,-292.542,-27.3937,-292.542	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	1/1:91:0,91,0:0:0:91,0:3240,0:-291.823,-27.3937,0,-291.823,-27.3937,-291.823	1/2:63:1,41,21:1:25:41,21:1445,752:-176.83,-59.4858,-49.0875,-115.803,0,-111.428	1/1:53:0,53,0:0:0:53,0:1853,0:-166.731,-15.9546,0,-166.731,-15.9546,-166.731	1/2:11:0,7,4:0:0:7,4:248,144:-32.3087,-12.1095,-10.0023,-20.557,0,-19.3529	1/1:13:0,13,0:0:0:13,0:445,0:-40.3748,-3.91339,0,-40.3748,-3.91339,-40.3748	1/1:7:0,7,0:0:0:7,0:244,0:-22.2994,-2.10721,0,-22.2994,-2.10721,-22.2994	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:106:0,46,59:0:0:46,59:1652,2116:-307.431,-172.668,-158.821,-134.841,0,-117.08	1/2:65:0,28,37:0:0:28,37:996,1319:-189.043,-107.872,-99.4436,-81.526,0,-70.3879	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:75:0,45,30:0:0:45,30:1608,1072:-218.868,-87.7616,-74.2152,-131.464,0,-122.433	1/1:13:0,13,0:0:0:13,0:455,0:-41.282,-3.91339,0,-41.282,-3.91339,-41.282	1/1:47:0,46,0:0:0:46,0:1621,0:-145.871,-13.8474,0,-145.871,-13.8474,-145.871	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/1:25:0,23,0:0:0:23,0:820,0:-73.8527,-6.92369,0,-73.8527,-6.92369,-73.8527	1/2:78:0,27,51:0:0:27,51:968,1816:-227.313,-148.361,-140.233,-79.3096,0,-63.957	1/2:71:0,39,32:0:0:39,32:1384,1126:-204.779,-92.0137,-80.2735,-113.119,0,-103.486	1/1:65:0,65,0:0:0:65,0:2320,0:-209.061,-19.567,0,-209.061,-19.567,-209.061	1/1:60:0,60,0:0:0:60,0:2072,0:-186.745,-18.0618,0,-186.745,-18.0618,-186.745	1/2:45:0,29,16:0:0:29,16:998,576:-128.4,-47.3585,-38.6286,-81.3958,0,-76.5794	1/1:21:0,21,0:0:0:21,0:737,0:-66.6506,-6.32163,0,-66.6506,-6.32163,-66.6506	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:82:0,82,0:0:0:82,0:2905,0:-261.655,-24.6845,0,-261.655,-24.6845,-261.655	1/1:30:0,30,0:0:0:30,0:1064,0:-96.0717,-9.0309,0,-96.0717,-9.0309,-96.0717	1/2:9:0,6,2:0:0:6,2:208,72:-22.8878,-5.96142,-4.15524,-17.0063,0,-16.4042	1/1:42:0,42,0:0:0:42,0:1485,0:-133.943,-12.6433,0,-133.943,-12.6433,-133.943	1/2:13:0,4,9:0:0:4,9:144,320:-38.1481,-26.397,-25.1928,-12.1095,0,-9.40023	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424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chr11	26015110	.	A	G	145609	PASS	AB=0.537854;ABP=48.7129;AC=148;AF=0.787234;AN=188;AO=6786;CIGAR=1X;DP=8502;DPB=8502;DPRA=15.2258;EPP=14729.9;EPPR=3722.74;GTI=1;LEN=1;MEANALT=1.03226;MQM=59.9705;MQMR=59.9352;NS=94;NUMALT=1;ODDS=6.62626;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242859;QR=61259;RO=1713;RPL=6785;RPP=14729.9;RPPR=3696.73;RPR=1;RUN=1;SAF=6786;SAP=14738.6;SAR=0;SRF=1710;SRP=3696.73;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:97:38,59:38:1359:59:2113:-161.238,0,-93.4099	1/1:100:0,100:0:0:100:3554:-320.068,-30.103,0	0/1:281:154,127:154:5501:127:4553:-325.345,0,-410.627	1/1:43:0,43:0:0:43:1524:-137.45,-12.9443,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:79:0,79:0:0:79:2803:-252.508,-23.7814,0	1/1:122:0,122:0:0:122:4368:-393.293,-36.7257,0	0/1:95:53,42:53:1900:42:1504:-107.057,0,-142.68	1/1:94:0,94:0:0:94:3371:-303.605,-28.2968,0	1/1:63:0,62:0:0:62:2232:-200.823,-18.6639,0	0/1:80:46,34:46:1648:34:1201:-84.3113,0,-124.526	0/1:85:43,42:43:1532:42:1499:-109.616,0,-112.586	1/1:78:0,78:0:0:78:2787:-251.07,-23.4803,0	0/1:78:42,36:42:1512:36:1296:-93.4636,0,-112.894	1/1:62:0,62:0:0:62:2219:-199.974,-18.6639,0	0/1:47:13,34:13:449:34:1212:-95.2379,0,-26.5891	0/1:58:19,39:19:684:39:1400:-108.839,0,-44.4306	0/1:47:15,32:15:540:32:1144:-89.1211,0,-34.7881	0/1:157:74,83:74:2660:83:2988:-221.889,0,-192.296	1/1:132:1,131:1:36:131:4700:-419.561,-36.1377,0	0/1:46:28,18:28:1000:18:648:-44.8045,0,-76.4446	0/1:89:52,37:52:1845:37:1324:-92.6704,0,-139.518	1/1:144:0,144:0:0:144:5156:-464.179,-43.3483,0	1/1:34:0,34:0:0:34:1207:-108.935,-10.235,0	0/1:334:134,200:134:4797:200:7184:-545.962,0,-331.312	1/1:268:0,268:0:0:268:9611:-864.937,-80.676,0	1/1:46:2,44:2:72:44:1572:-134.935,-7.01066,0	1/1:221:0,221:0:0:221:7922:-713.002,-66.5276,0	0/1:116:64,52:64:2277:52:1864:-133.12,0,-170.271	1/1:148:0,148:0:0:148:5300:-477.135,-44.5524,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:226:94,131:94:3368:131:4679:-353.179,0,-235.244	0/1:128:47,81:47:1688:81:2907:-223.333,0,-113.675	1/1:64:0,64:0:0:64:2291:-206.451,-19.2659,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:150:64,86:64:2287:86:3080:-232.274,0,-160.937	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:66:3,63:3:104:63:2260:-193.77,-10.1652,0	1/1:125:0,125:0:0:125:4457:-401.298,-37.6288,0	1/1:85:0,85:0:0:85:3054:-275.089,-25.5876,0	0/1:82:33,49:33:1184:49:1737:-131.928,0,-82.1839	0/1:76:17,59:17:612:59:2091:-165.579,0,-32.5352	1/1:168:0,168:0:0:168:6015:-541.454,-50.573,0	1/1:202:0,202:0:0:202:7244:-652.011,-60.8081,0	0/1:100:42,58:42:1512:58:2084:-157.727,0,-106.272	1/1:148:0,148:0:0:148:5303:-477.403,-44.5524,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:105:0,105:0:0:105:3768:-339.318,-31.6082,0	1/1:63:0,63:0:0:63:2248:-202.584,-18.9649,0	0/1:23:10,13:10:345:13:464:-35.1705,0,-24.4571	1/1:83:0,83:0:0:83:2984:-268.791,-24.9855,0	0/1:32:14,18:14:500:18:648:-49.0189,0,-35.7032	1/1:4:0,4:0:0:4:129:-11.9214,-1.20412,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:89:0,89:0:0:89:3192:-287.458,-26.7917,0	0/1:111:47,64:47:1688:64:2295:-173.396,0,-118.793	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:195:101,94:101:3632:94:3353:-243.285,0,-268.383	1/1:113:2,111:2:72:111:3976:-351.163,-27.1797,0	0/1:43:16,27:16:576:27:968:-74.4931,0,-39.2307	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	0/1:124:57,67:57:2044:67:2382:-177.31,0,-146.788	1/1:95:1,94:1:36:94:3353:-298.388,-24.9996,0	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	1/1:86:0,86:0:0:86:3088:-278.147,-25.8886,0	1/1:101:0,101:0:0:101:3588:-323.018,-30.404,0	0/1:18:11,7:11:377:7:241:-16.6062,0,-28.8394	1/1:128:1,127:1:36:127:4532:-404.447,-34.9336,0	1/1:82:0,82:0:0:82:2930:-263.932,-24.6845,0	1/1:119:0,118:0:0:118:4236:-380.987,-35.5215,0	0/1:191:89,102:89:3177:102:3639:-270.215,0,-228.647	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:85:47,38:47:1661:38:1368:-97.8309,0,-124.188	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:83:42,41:42:1508:41:1457:-106.438,0,-111.029	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:228:0,228:0:0:228:8178:-736.03,-68.6348,0	0/1:80:35,45:35:1244:45:1603:-120.471,0,-88.1823	1/1:89:1,88:1:36:88:3147:-279.857,-23.1934,0	1/1:121:0,121:0:0:121:4309:-387.987,-36.4246,0	1/1:169:0,169:0:0:169:6023:-542.176,-50.8741,0	1/1:57:0,57:0:0:57:2031:-183.062,-17.1587,0	0/1:80:29,51:29:1032:51:1824:-140.359,0,-69.1111	0/1:66:29,37:29:1044:37:1317:-98.9627,0,-74.4068	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:66:31,35:31:1112:35:1260:-93.8375,0,-80.5234	0/1:68:43,25:43:1532:25:891:-60.0387,0,-117.703	1/1:116:0,116:0:0:116:4164:-374.941,-34.9195,0	1/1:124:0,124:0:0:124:4443:-400.04,-37.3277,0
chr11	26046343	.	G	T	20016	PASS	AB=0.516831;ABP=12.5126;AC=40;AF=0.212766;AN=188;AO=2007;CIGAR=1X;DP=8588;DPB=8588;DPRA=1.24897;EPP=4335.14;EPPR=13937.3;GTI=0;LEN=1;MEANALT=1.06122;MQM=28.6726;MQMR=33.5322;NS=94;NUMALT=1;ODDS=3.46681;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71929;QR=235234;RO=6576;RPL=3;RPP=4335.14;RPPR=13937.3;RPR=2004;RUN=1;SAF=2007;SAP=4361.16;SAR=0;SRF=6576;SRP=14282.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:773:0:0:0,-6.62266,-58.5134	0/1:91:46,45:46:1652:45:1611:-86.6864,0,-99.2294	0/0:112:111,0:111:3965:0:0:0,-33.4143,-299.676	0/1:134:65,69:65:2332:69:2461:-129.507,0,-149.154	0/0:22:22,0:22:792:0:0:0,-6.62266,-62.2367	0/0:20:20,0:20:705:0:0:0,-6.0206,-54.5669	0/0:66:66,0:66:2357:0:0:0,-19.868,-191.154	0/0:144:142,2:142:5092:2:72:0,-37.9883,-377.643	0/1:25:9,16:9:320:16:572:-33.3657,0,-16.4093	0/0:112:110,2:110:3914:2:72:0,-29.2261,-307.428	0/0:181:181,0:181:6485:0:0:0,-54.4864,-520.563	0/1:98:40,58:40:1427:58:2084:-118.851,0,-78.3011	0/1:86:54,32:54:1932:32:1148:-55.6105,0,-119.379	0/0:180:179,1:179:6413:1:36:0,-51.3643,-492.011	0/1:70:36,34:36:1284:34:1220:-62.8348,0,-80.9067	0/0:99:99,0:99:3531:0:0:0,-29.802,-272.166	0/1:98:51,47:51:1819:47:1688:-90.0988,0,-106.225	0/1:91:52,39:52:1855:39:1395:-71.9869,0,-111.076	0/1:107:47,60:47:1679:60:2160:-120.904,0,-95.613	0/1:115:47,68:47:1680:68:2425:-134.105,0,-101.158	0/0:92:92,0:92:3287:0:0:0,-27.6948,-255.524	0/1:62:17,45:17:608:45:1616:-92.3524,0,-30.3958	0/1:16:5,11:5:176:11:396:-22.6999,0,-9.91115	0/0:65:65,0:65:2336:0:0:0,-19.5669,-178.572	0/0:47:47,0:47:1684:0:0:0,-14.1484,-131.149	0/1:193:104,89:104:3736:89:3191:-161.7,0,-248.23	0/0:171:170,1:170:6076:1:36:0,-49.293,-466.656	0/0:38:37,1:37:1315:1:36:0,-8.3155,-99.1192	0/0:192:192,0:192:6888:0:0:0,-57.7978,-571.697	0/1:145:82,62:82:2944:62:2219:-113.754,0,-183.955	0/0:76:75,1:75:2673:1:36:0,-20.5047,-210.513	0/1:18:5,13:5:176:13:468:-27.8702,0,-8.78697	0/0:22:22,0:22:780:0:0:0,-6.62266,-61.5071	0/0:17:17,0:17:603:0:0:0,-5.11751,-45.5084	0/0:26:26,0:26:932:0:0:0,-7.82678,-71.6411	0/0:17:17,0:17:612:0:0:0,-5.11751,-47.0399	0/1:162:82,79:82:2935:79:2840:-146.452,0,-195.445	0/1:185:95,90:95:3390:90:3228:-172.261,0,-203.685	0/0:181:181,0:181:6495:0:0:0,-54.4864,-490.017	0/0:8:8,0:8:280:0:0:0,-2.40824,-20.9021	0/1:101:47,54:47:1680:54:1908:-106.003,0,-100.643	0/0:111:111,0:111:3963:0:0:0,-33.4143,-304.27	0/0:73:73,0:73:2602:0:0:0,-21.9752,-201.504	0/0:87:87,0:87:3124:0:0:0,-26.1896,-250.987	0/0:68:68,0:68:2424:0:0:0,-20.47,-195.17	0/1:49:28,21:28:973:21:756:-37.2374,0,-65.9681	0/1:100:47,53:47:1684:53:1904:-105.14,0,-97.2071	0/0:136:136,0:136:4860:0:0:0,-40.9401,-390.78	0/0:59:59,0:59:2101:0:0:0,-17.7608,-169.32	0/1:136:75,61:75:2696:61:2192:-109.763,0,-172.98	0/0:124:124,0:124:4417:0:0:0,-37.3277,-365.459	0/1:19:8,11:8:284:11:396:-21.5628,0,-17.7744	0/0:96:96,0:96:3431:0:0:0,-28.8989,-259.195	0/0:37:37,0:37:1328:0:0:0,-11.1381,-109.899	0/1:30:13,17:13:464:17:612:-34.9619,0,-26.411	0/0:86:86,0:86:3084:0:0:0,-25.8886,-235.234	0/1:23:14,9:14:500:9:320:-15.6709,0,-34.1486	0/0:21:21,0:21:756:0:0:0,-6.32163,-63.6143	0/0:12:12,0:12:428:0:0:0,-3.61236,-34.7106	0/0:56:56,0:56:1989:0:0:0,-16.8577,-156.037	0/1:193:101,92:101:3615:92:3308:-169.841,0,-238.057	0/1:7:2,5:2:72:5:180:-10.5574,0,-3.9441	0/1:83:36,47:36:1292:47:1675:-90.9679,0,-80.8895	0/0:183:182,1:182:6517:1:36:0,-52.715,-520.881	0/1:95:46,49:46:1652:49:1751:-95.7056,0,-99.1138	0/0:71:71,0:71:2532:0:0:0,-21.3731,-204.502	0/1:121:67,54:67:2399:54:1925:-96.8348,0,-157	0/0:86:85,1:85:3052:1:36:0,-23.515,-243.588	0/1:86:41,45:41:1468:45:1612:-88.8297,0,-87.606	0/0:65:65,0:65:2317:0:0:0,-19.5669,-172.904	0/0:114:114,0:114:4066:0:0:0,-34.3174,-337.099	0/1:31:17,14:17:597:14:496:-25.5686,0,-39.7571	0/0:111:111,0:111:3949:0:0:0,-33.4143,-297.701	0/0:57:57,0:57:2052:0:0:0,-17.1587,-153.985	0/0:59:59,0:59:2124:0:0:0,-17.7608,-164.295	0/1:125:47,78:47:1692:78:2800:-155.344,0,-99.0215	0/0:102:102,0:102:3668:0:0:0,-30.7051,-273.506	0/1:124:62,62:62:2228:62:2224:-120.269,0,-129.439	0/1:20:9,11:9:324:11:392:-21.8267,0,-18.0561	0/1:92:47,45:47:1688:45:1612:-86.6655,0,-104.645	0/0:86:86,0:86:3065:0:0:0,-25.8886,-232.946	0/0:156:156,0:156:5585:0:0:0,-46.9607,-444.29	0/1:125:60,64:60:2144:64:2292:-122.19,0,-135.609	0/0:132:132,0:132:4717:0:0:0,-39.736,-377.372	0/0:74:74,0:74:2660:0:0:0,-22.2762,-211.238	0/0:142:141,0:141:5055:0:0:0,-42.4452,-405.283	0/0:41:41,0:41:1472:0:0:0,-12.3422,-111.381	0/1:91:42,49:42:1473:49:1760:-97.3576,0,-86.2134	0/1:95:48,47:48:1724:47:1680:-91.6291,0,-102.426	0/0:211:211,0:211:7564:0:0:0,-63.5173,-586.794	0/1:325:141,184:141:5051:184:6612:-371.102,0,-296.604	0/1:95:28,67:28:1000:67:2404:-137.191,0,-53.1756	0/0:63:63,0:63:2260:0:0:0,-18.9649,-187.144	0/0:97:96,1:96:3439:1:36:0,-26.4637,-274.149
chr11	26046348	.	GACAT	CACAC,CACAT	143496	PASS	AB=0.486842,0.510062;ABP=8.83899,6.41877;AC=148,40;AF=0.787234,0.212766;AN=188;AO=6669,1985;CIGAR=1X3M1X,1X4M;DP=8691;DPB=8691;DPRA=0,1.21527;EPP=14027.9,4287.36;EPPR=5.18177;GTI=0;LEN=5,1;MEANALT=1.85106,2.32609;MQM=33.5179,28.7234;MQMR=60;NS=94;NUMALT=2;ODDS=3.87333;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=233732,56820;QR=36;RO=1;RPL=53,3;RPP=14027.9,4287.36;RPPR=5.18177;RPR=6616,1982;RUN=1,1;SAF=6669,1985;SAP=14484.6,4313.38;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22,0:0:0:22,0:770,0:-58.8401,-6.62266,0,-58.8401,-6.62266,-58.8401	1/2:93:0,48,44:0:0:48,44:1646,1273:-203.889,-89.5042,-75.0548,-114.412,0,-101.167	1/1:115:0,114,0:0:0:114,0:3977,0:-302.312,-34.3174,0,-302.312,-34.3174,-302.312	1/2:132:0,65,67:0:0:65,67:2319,1881:-300.267,-131.24,-111.673,-169.314,0,-149.145	1/1:22:0,22,0:0:0:22,0:791,0:-62.2041,-6.62266,0,-62.2041,-6.62266,-62.2041	1/1:20:0,20,0:0:0:20,0:698,0:-54.492,-6.0206,0,-54.492,-6.0206,-54.492	1/1:68:0,68,0:0:0:68,0:2394,0:-195.231,-20.47,0,-195.231,-20.47,-195.231	1/1:147:0,142,2:0:0:142,2:4986,58:-380.812,-42.7463,0,-376.736,-38.6484,-376.134	1/2:24:0,9,15:0:0:9,15:305,435:-51.3228,-30.8343,-28.125,-20.7649,0,-16.2495	1/1:113:0,111,2:0:0:111,2:3904,48:-312.686,-33.4143,0,-309.51,-30.026,-308.908	1/1:185:0,185,0:0:0:185,0:6493,0:-525.026,-55.6906,0,-525.026,-55.6906,-525.026	1/2:99:0,42,57:0:0:42,57:1489,1670:-218.091,-118.459,-105.815,-99.915,0,-82.7563	1/2:89:0,54,34:0:0:54,34:1889,984:-197.134,-69.2872,-53.0316,-127.913,0,-117.678	1/1:185:0,184,1:0:0:184,1:6451,29:-502.394,-55.3895,0,-500.356,-53.0913,-500.055	1/2:71:0,38,33:0:0:38,33:1327,928:-158.788,-64.9065,-53.4674,-94.1591,0,-84.2252	1/1:100:0,98,0:0:0:98,0:3443,0:-268.322,-29.5009,0,-268.322,-29.5009,-268.322	1/2:98:0,49,48:0:0:49,48:1712,1398:-213.511,-98.7335,-83.983,-114.854,0,-100.405	1/2:91:0,52,37:0:0:52,37:1829,1074:-198.347,-75.5658,-59.9123,-122.853,0,-111.715	1/2:105:0,46,58:0:0:46,58:1594,1689:-228.979,-118.914,-105.066,-110.148,0,-92.6885	1/2:118:0,50,67:0:0:50,67:1725,1895:-257.705,-132.273,-117.222,-125.489,0,-105.32	1/1:98:0,98,0:0:0:98,0:3404,0:-266.182,-29.5009,0,-266.182,-29.5009,-266.182	1/2:63:0,17,46:0:0:17,46:593,1288:-132.531,-89.8742,-84.7567,-42.9524,0,-29.105	1/2:14:0,5,9:0:0:5,9:179,254:-31.0529,-17.9672,-16.4621,-13.3838,0,-10.6746	1/1:66:0,66,0:0:0:66,0:2323,0:-179.61,-19.868,0,-179.61,-19.868,-179.61	1/1:48:0,47,0:0:0:47,0:1681,0:-130.867,-14.1484,0,-130.867,-14.1484,-130.867	1/2:194:0,106,88:0:0:106,88:3709,2466:-445.438,-172.068,-140.158,-273.652,0,-247.162	1/1:172:0,171,0:0:0:171,0:6040,0:-467.778,-51.4761,0,-467.778,-51.4761,-467.778	1/1:40:0,38,1:0:0:38,1:1323,33:-104.459,-11.4391,0,-102.061,-9.0002,-101.76	1/1:196:0,194,0:0:0:194,0:6880,0:-573.439,-58.3998,0,-573.439,-58.3998,-573.439	1/2:144:0,84,60:0:0:84,60:2898,1741:-325.435,-122.647,-97.3609,-203.065,0,-185.003	1/1:76:0,75,0:0:0:75,0:2630,0:-210.386,-22.5773,0,-210.386,-22.5773,-210.386	1/2:17:0,5,12:0:0:5,12:162,348:-36.3805,-24.7194,-23.2142,-11.944,0,-8.3316	1/1:22:0,22,0:0:0:22,0:765,0:-60.5638,-6.62266,0,-60.5638,-6.62266,-60.5638	1/1:17:0,17,0:0:0:17,0:579,0:-44.6467,-5.11751,0,-44.6467,-5.11751,-44.6467	1/1:28:0,28,0:0:0:28,0:939,0:-74.2699,-8.42884,0,-74.2699,-8.42884,-74.2699	1/1:19:0,18,0:0:0:18,0:607,0:-47.1976,-5.41854,0,-47.1976,-5.41854,-47.1976	1/2:164:0,83,81:0:0:83,81:2908,2278:-376.869,-159.01,-134.024,-218.147,0,-193.763	1/2:189:0,98,91:0:0:98,91:3378,2632:-417.919,-185.114,-155.614,-233.082,0,-205.688	1/1:184:0,184,0:0:0:184,0:6421,0:-491.362,-55.3895,0,-491.362,-55.3895,-491.362	1/1:8:0,7,0:0:0:7,0:229,0:-18.0323,-2.10721,0,-18.0323,-2.10721,-18.0323	1/2:101:0,47,54:0:0:47,54:1634,1569:-224.799,-110.598,-96.4495,-114.484,0,-98.2284	1/1:112:0,111,0:0:0:111,0:3882,0:-301.48,-33.4143,0,-301.48,-33.4143,-301.48	1/1:78:0,78,0:0:0:78,0:2720,0:-213.636,-23.4803,0,-213.636,-23.4803,-213.636	1/1:87:0,87,0:0:0:87,0:3072,0:-248.515,-26.1896,0,-248.515,-26.1896,-248.515	1/1:71:0,71,0:0:0:71,0:2483,0:-201.252,-21.3731,0,-201.252,-21.3731,-201.252	1/2:47:0,28,19:0:0:28,19:989,532:-110.535,-37.2686,-28.8398,-73.5464,0,-67.8269	1/2:103:0,47,54:0:0:47,54:1647,1571:-222.974,-110.69,-96.5411,-112.362,0,-96.1067	1/1:137:0,137,0:0:0:137,0:4772,0:-387.722,-41.2411,0,-387.722,-41.2411,-387.722	1/1:62:0,62,0:0:0:62,0:2183,0:-177.183,-18.6639,0,-177.183,-18.6639,-177.183	1/2:137:0,77,60:0:0:77,60:2746,1682:-311.482,-117.531,-94.3519,-194.229,0,-176.167	1/1:125:0,124,0:0:0:124,0:4348,0:-362.253,-37.3277,0,-362.253,-37.3277,-362.253	1/2:19:0,8,11:0:0:8,11:278,307:-41.9921,-21.591,-19.1827,-20.6892,0,-17.3778	1/1:96:0,95,0:0:0:95,0:3354,0:-255.868,-28.5979,0,-255.868,-28.5979,-255.868	1/1:38:0,38,0:0:0:38,0:1338,0:-111.362,-11.4391,0,-111.362,-11.4391,-111.362	1/2:29:0,13,16:0:0:13,16:436,472:-63.8874,-33.5973,-29.6839,-30.5702,0,-25.7537	1/1:87:0,87,0:0:0:87,0:3058,0:-236.44,-26.1896,0,-236.44,-26.1896,-236.44	1/2:23:0,15,8:0:0:15,8:523,226:-54.2008,-16.0191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chr11	26110555	.	G	A	78156	PASS	AB=0.511375;ABP=5.28272;AC=144;AF=0.774194;AN=186;AO=3686;CIGAR=1X;DP=4688;DPB=4688;DPRA=12.8571;EPP=8007.06;EPPR=2170.15;GTI=0;LEN=1;MEANALT=1;MQM=50.8703;MQMR=59.983;NS=93;NUMALT=1;ODDS=0.758092;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132003;QR=35711;RO=1002;RPL=0;RPP=8007.06;RPPR=2161.49;RPR=3686;RUN=1;SAF=0;SAP=8007.06;SAR=3686;SRF=1;SRP=2170.15;SRR=1001;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:791:-71.003,-6.62266,0	0/1:84:48,36:48:1724:36:1296:-91.373,0,-130.159	1/1:80:0,80:0:0:80:2880:-258.62,-24.0824,0	0/1:94:50,44:50:1800:44:1575:-112.771,0,-133.985	1/1:23:0,23:0:0:23:828:-74.4573,-6.92369,0	1/1:24:0,24:0:0:24:864:-77.8863,-7.22472,0	1/1:56:0,56:0:0:56:2012:-180.51,-16.8577,0	1/1:93:0,93:0:0:93:3325:-298.74,-27.9958,0	0/1:38:19,19:19:680:19:684:-50.2032,0,-50.09	1/1:49:0,49:0:0:49:1737:-156.054,-14.7505,0	1/1:27:0,27:0:0:27:968:-86.8681,-8.12781,0	0/1:34:22,12:22:792:12:432:-28.8912,0,-61.3707	0/1:33:19,14:19:671:14:504:-35.6492,0,-50.7818	1/1:40:0,40:0:0:40:1440:-129.2,-12.0412,0	0/1:22:12,10:12:424:10:356:-25.6577,0,-31.8738	1/1:29:0,29:0:0:29:1044:-93.7804,-8.72987,0	0/1:30:16,14:16:572:14:504:-36.5596,0,-42.7743	0/1:32:16,16:16:576:16:576:-42.303,0,-42.542	0/1:22:15,7:15:527:7:252:-16.3484,0,-41.1375	0/1:125:57,68:57:2037:68:2448:-182.224,0,-145.971	1/1:79:1,78:1:36:78:2800:-247.113,-20.1831,0	0/1:58:40,18:40:1423:18:639:-40.2994,0,-110.907	0/1:41:15,26:15:536:26:932:-71.5859,0,-36.2326	1/1:79:0,79:0:0:79:2829:-253.284,-23.7814,0	1/1:28:0,28:0:0:28:1008:-90.5653,-8.42884,0	0/1:156:77,79:77:2734:79:2825:-206.989,0,-199.34	1/1:95:1,94:1:36:94:3337:-293.957,-24.9996,0	1/1:19:0,19:0:0:19:684:-60.9898,-5.71957,0	1/1:152:0,152:0:0:152:5447:-488.356,-45.7566,0	0/1:60:32,28:32:1137:28:1008:-72.4703,0,-84.5736	1/1:64:0,64:0:0:64:2289:-205.209,-19.2659,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:8:0,8:0:0:8:288:-26.125,-2.40824,0	1/1:8:0,8:0:0:8:288:-26.2014,-2.40824,0	1/1:6:0,6:0:0:6:214:-19.4339,-1.80618,0	1/1:6:0,6:0:0:6:216:-19.7516,-1.80618,0	0/1:92:48,44:48:1720:44:1584:-114.579,0,-127.391	0/1:115:53,62:53:1865:62:2213:-163.051,0,-133.509	1/1:20:0,20:0:0:20:707:-63.7054,-6.0206,0	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	0/1:61:23,38:23:824:38:1368:-104.044,0,-56.1205	1/1:14:0,14:0:0:14:496:-44.3811,-4.21442,0	1/1:84:0,84:0:0:84:3009:-268.804,-25.2865,0	1/1:26:0,26:0:0:26:936:-84.163,-7.82678,0	1/1:23:0,23:0:0:23:828:-74.5988,-6.92369,0	0/1:61:33,28:33:1169:28:1004:-72.1352,0,-87.1525	0/1:43:15,28:15:531:28:1008:-77.868,0,-35.1776	1/1:112:0,112:0:0:112:4004:-358.16,-33.7154,0	1/1:81:2,79:2:72:79:2821:-245.888,-17.5467,0	0/1:68:24,44:24:856:44:1580:-121.546,0,-56.8911	1/1:116:0,116:0:0:116:4168:-374.53,-34.9195,0	0/1:6:5,1:5:176:1:36:-1.7803,0,-14.3779	1/1:70:0,70:0:0:70:2516:-225.572,-21.0721,0	1/1:8:0,8:0:0:8:288:-26.2302,-2.40824,0	0/1:12:5,7:5:180:7:252:-19.3587,0,-12.9397	1/1:39:0,39:0:0:39:1396:-125.035,-11.7402,0	0/1:9:2,7:2:72:7:252:-20.2442,0,-4.12745	1/1:6:0,6:0:0:6:201:-18.3935,-1.80618,0	1/1:7:0,7:0:0:7:252:-22.9963,-2.10721,0	1/1:51:0,51:0:0:51:1824:-163.245,-15.3525,0	0/1:75:29,46:29:1023:46:1656:-126.219,0,-69.8045	.:.:.:.:.:.:.:.	0/1:91:38,53:38:1368:53:1893:-143.004,0,-96.0271	1/1:117:0,117:0:0:117:4169:-373.808,-35.2205,0	0/1:39:20,19:20:716:19:669:-48.3904,0,-53.0275	1/1:40:0,40:0:0:40:1436:-129.115,-12.0412,0	0/1:69:27,42:27:955:42:1512:-114.67,0,-65.4938	1/1:47:0,47:0:0:47:1660:-149.03,-14.1484,0	0/1:10:7,3:7:252:3:108:-7.02001,0,-20.0187	1/1:35:1,34:1:36:34:1216:-105.118,-6.94037,0	1/1:52:0,52:0:0:52:1859:-167.208,-15.6536,0	0/1:22:15,7:15:536:7:252:-16.3308,0,-41.9522	1/1:73:0,73:0:0:73:2624:-235.509,-21.9752,0	1/1:21:1,20:1:36:20:716:-60.6529,-2.72336,0	1/1:106:0,106:0:0:106:3804:-339.869,-31.9092,0	0/1:78:42,36:42:1508:36:1296:-92.8938,0,-112.534	1/1:78:0,78:0:0:78:2762:-247.629,-23.4803,0	0/1:54:18,36:18:644:36:1291:-99.7946,0,-42.035	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:81:25,56:25:892:56:1997:-154.633,0,-56.2163	1/1:53:0,53:0:0:53:1900:-170.622,-15.9546,0	1/1:134:0,134:0:0:134:4797:-428.772,-40.338,0	0/1:44:20,24:20:720:24:856:-63.881,0,-51.8835	1/1:23:0,23:0:0:23:816:-72.9252,-6.92369,0	1/1:45:0,45:0:0:45:1603:-143.668,-13.5464,0	1/1:71:0,71:0:0:71:2544:-228.475,-21.3731,0	1/1:19:0,19:0:0:19:684:-61.7347,-5.71957,0	0/1:46:29,17:29:1025:17:612:-41.4316,0,-78.7133	0/1:33:16,17:16:572:17:612:-45.3498,0,-41.8794	0/1:27:17,10:17:604:10:356:-24.0933,0,-46.5628	0/1:25:11,14:11:396:14:500:-37.5886,0,-28.457	0/1:32:28,4:28:970:4:144:-3.63703,0,-77.9747	1/1:54:0,54:0:0:54:1944:-174.664,-16.2556,0	1/1:45:0,45:0:0:45:1616:-145.064,-13.5464,0
chr11	26110562	.	G	A	99490.2	PASS	AB=0.507677;ABP=4.04387;AC=144;AF=0.774194;AN=186;AO=3666;CIGAR=1X;DP=4674;DPB=4674;DPRA=12.8187;EPP=9.41691;EPPR=26.3569;GTI=0;LEN=1;MEANALT=1.02198;MQM=50.8677;MQMR=59.9761;NS=93;NUMALT=1;ODDS=4.08753;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131014;QR=35891;RO=1006;RPL=1885;RPP=9.41691;RPPR=27.2634;RPR=1781;RUN=1;SAF=0;SAP=7963.63;SAR=3666;SRF=1;SRP=2178.83;SRR=1005;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:746:-67.1205,-6.32163,0	0/1:85:48,37:48:1703:37:1313:-92.4998,0,-127.968	1/1:78:0,78:0:0:78:2804:-251.805,-23.4803,0	0/1:89:47,42:47:1680:42:1504:-108.011,0,-124.695	1/1:23:0,23:0:0:23:824:-74.107,-6.92369,0	1/1:24:0,24:0:0:24:860:-77.5304,-7.22472,0	1/1:57:0,57:0:0:57:2040:-182.108,-17.1587,0	1/1:91:0,91:0:0:91:3244:-291.486,-27.3937,0	0/1:38:19,19:19:676:19:669:-48.8547,0,-49.7289	1/1:51:0,51:0:0:51:1809:-162.31,-15.3525,0	1/1:28:0,28:0:0:28:1008:-90.4069,-8.42884,0	0/1:35:22,13:22:784:13:468:-31.8204,0,-60.3479	0/1:34:19,15:19:669:15:536:-38.2217,0,-50.2989	1/1:39:0,39:0:0:39:1404:-125.98,-11.7402,0	0/1:22:12,10:12:432:10:347:-24.8494,0,-32.5985	1/1:28:0,28:0:0:28:1000:-89.8595,-8.42884,0	0/1:32:17,15:17:589:15:531:-38.374,0,-43.6921	0/1:32:16,16:16:576:16:568:-41.5897,0,-42.542	0/1:22:15,7:15:532:7:248:-15.9886,0,-41.5904	0/1:125:58,67:58:2061:67:2380:-176.148,0,-148.131	1/1:81:1,80:1:36:80:2855:-251.848,-20.7852,0	0/1:61:42,19:42:1500:19:684:-43.4362,0,-116.932	0/1:42:15,27:15:523:27:957:-73.5257,0,-34.7552	1/1:76:0,76:0:0:76:2707:-242.409,-22.8783,0	1/1:27:0,27:0:0:27:972:-87.3444,-8.12781,0	0/1:155:79,76:79:2829:76:2732:-198.864,0,-208.187	1/1:93:0,93:0:0:93:3308:-294.827,-27.9958,0	1/1:19:0,19:0:0:19:680:-60.6392,-5.71957,0	1/1:152:0,152:0:0:152:5426:-486.364,-45.7566,0	0/1:62:34,28:34:1197:28:1000:-71.1682,0,-89.368	1/1:65:0,65:0:0:65:2313:-207.426,-19.567,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:8:0,8:0:0:8:284:-25.7715,-2.40824,0	1/1:8:0,8:0:0:8:288:-26.2014,-2.40824,0	1/1:6:0,6:0:0:6:216:-19.5559,-1.80618,0	1/1:5:0,5:0:0:5:180:-16.5164,-1.50515,0	0/1:92:48,44:48:1728:44:1563:-112.8,0,-128.111	0/1:114:55,59:55:1968:59:2103:-153.417,0,-143.078	1/1:20:0,20:0:0:20:720:-64.8727,-6.0206,0	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	0/1:60:23,37:23:828:37:1316:-99.7254,0,-56.7823	1/1:14:0,14:0:0:14:500:-44.7325,-4.21442,0	1/1:88:0,88:0:0:88:3149:-281.224,-26.4906,0	1/1:26:0,26:0:0:26:936:-84.163,-7.82678,0	1/1:25:0,25:0:0:25:896:-80.7002,-7.52575,0	0/1:60:31,29:31:1112:29:1040:-75.6701,0,-82.3295	0/1:42:14,28:14:500:28:1008:-78.169,0,-32.6929	1/1:110:0,109:0:0:109:3880:-347.456,-32.8123,0	1/1:81:2,79:2:72:79:2828:-246.526,-17.5467,0	0/1:68:25,43:25:879:43:1548:-118.62,0,-58.9568	1/1:115:0,115:0:0:115:4108:-369.192,-34.6185,0	0/1:4:3,1:3:108:1:36:-2.38236,0,-8.87105	1/1:69:0,69:0:0:69:2480:-222.342,-20.7711,0	1/1:8:0,8:0:0:8:284:-25.8689,-2.40824,0	0/1:12:5,7:5:180:7:252:-19.3587,0,-12.9397	1/1:40:0,40:0:0:40:1415:-126.755,-12.0412,0	0/1:10:2,7:2:72:7:252:-19.8845,0,-3.76721	1/1:6:0,6:0:0:6:212:-19.3995,-1.80618,0	1/1:7:0,7:0:0:7:252:-22.9963,-2.10721,0	1/1:50:0,50:0:0:50:1788:-159.902,-15.0515,0	0/1:78:32,46:32:1148:46:1656:-125.316,0,-80.1495	.:.:.:.:.:.:.:.	0/1:89:37,52:37:1320:52:1864:-141.005,0,-92.3103	1/1:114:0,114:0:0:114:4056:-363.603,-34.3174,0	0/1:39:20,19:20:712:19:684:-49.4975,0,-52.6665	1/1:40:0,40:0:0:40:1436:-129.115,-12.0412,0	0/1:69:28,41:28:1000:41:1476:-111.442,0,-69.5443	1/1:47:1,46:1:36:46:1622:-142.018,-10.5501,0	0/1:10:7,3:7:248:3:108:-7.02001,0,-19.6539	1/1:35:1,34:1:36:34:1216:-105.118,-6.94037,0	1/1:52:0,52:0:0:52:1872:-168.371,-15.6536,0	0/1:22:15,7:15:536:7:243:-15.5188,0,-41.9522	1/1:74:0,74:0:0:74:2656:-238.25,-22.2762,0	1/1:21:0,21:0:0:21:756:-67.8459,-6.32163,0	1/1:103:0,103:0:0:103:3681:-328.882,-31.0061,0	0/1:78:42,36:42:1512:36:1292:-92.54,0,-112.894	1/1:76:0,76:0:0:76:2689:-241.13,-22.8783,0	0/1:52:18,34:18:644:34:1216:-93.643,0,-42.637	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:80:25,55:25:900:55:1976:-153.042,0,-57.2386	1/1:53:0,53:0:0:53:1900:-170.543,-15.9546,0	1/1:136:0,136:0:0:136:4880:-436.293,-40.9401,0	0/1:44:20,24:20:716:24:855:-63.7866,0,-51.5224	1/1:25:0,25:0:0:25:891:-79.3376,-7.52575,0	1/1:42:0,42:0:0:42:1508:-135.221,-12.6433,0	1/1:71:0,71:0:0:71:2552:-229.182,-21.3731,0	1/1:18:0,18:0:0:18:640:-57.7917,-5.41854,0	0/1:45:28,17:28:996:17:612:-41.7326,0,-76.4085	0/1:33:16,17:16:572:17:608:-44.9904,0,-41.8794	0/1:29:18,11:18:640:11:396:-27.0746,0,-49.1962	0/1:24:11,13:11:396:13:464:-34.6685,0,-28.758	0/1:31:27,4:27:957:4:144:-3.93806,0,-77.1119	1/1:56:0,56:0:0:56:1993:-179.072,-16.8577,0	1/1:44:0,44:0:0:44:1565:-140.495,-13.2453,0
chr11	26112025	.	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chr11	26169391	.	T	C	24438.2	PASS	AB=0.429082;ABP=161.935;AC=43;AF=0.228723;AN=188;AO=1572;CIGAR=1X;DP=8340;DPB=8340;DPRA=1.02283;EPP=3390.56;EPPR=14435.8;GTI=2;LEN=1;MEANALT=1.04;MQM=59.7506;MQMR=59.9805;NS=94;NUMALT=1;ODDS=4.44296;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55904;QR=242129;RO=6766;RPL=3;RPP=3390.56;RPPR=14435.8;RPR=1569;RUN=1;SAF=1572;SAP=3416.56;SAR=0;SRF=6766;SRP=14695.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:46:24,22:24:855:22:771:-55.8567,0,-63.4228	0/0:166:166,0:166:5942:0:0:0,-49.971,-534.697	0/1:211:113,98:113:4035:98:3477:-249.613,0,-299.735	0/0:68:68,0:68:2439:0:0:0,-20.47,-219.764	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:88:87,1:87:3128:1:36:0,-22.8924,-278.147	0/0:117:117,0:117:4175:0:0:0,-35.2205,-375.933	0/1:94:60,34:60:2135:34:1220:-81.8091,0,-164.121	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:114:58,56:58:2084:56:1986:-144.689,0,-153.513	0/1:74:42,32:42:1496:32:1140:-80.5002,0,-112.658	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:77:44,33:44:1580:33:1179:-83.237,0,-119.312	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3053	0/1:39:26,13:26:932:13:446:-28.5677,0,-72.4587	0/1:36:23,13:23:824:13:460:-30.8983,0,-63.6462	0/1:150:86,64:86:3071:64:2264:-158.848,0,-231.464	0/0:185:185,0:185:6615:0:0:0,-55.6905,-595.43	0/1:106:47,59:47:1692:59:2074:-154.988,0,-120.658	0/1:88:48,40:48:1697:40:1405:-100.254,0,-126.523	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:95:95,0:95:3390:0:0:0,-28.5978,-305.315	0/1:218:148,70:148:5282:70:2488:-158.543,0,-409.892	0/0:197:197,0:197:7024:0:0:0,-59.3029,-632.224	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:243:243,0:243:8672:0:0:0,-73.1503,-779.984	0/1:92:56,36:56:2008:36:1292:-88.8727,0,-153.299	0/0:86:86,0:86:3057:0:0:0,-25.8886,-275.359	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:28:27,1:27:972:1:36:0,-4.83056,-84.1996	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/1:195:92,103:92:3304:103:3668:-271.613,0,-238.877	0/1:119:80,39:80:2854:39:1396:-90.115,0,-221.274	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:56:31,25:31:1104:25:896:-64.1011,0,-82.813	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.591	0/0:138:138,0:138:4955:0:0:0,-41.5421,-446.097	0/0:78:77,1:77:2759:1:36:0,-19.8821,-244.953	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.374	0/1:98:60,38:60:2148:38:1364:-93.5543,0,-164.087	0/1:97:65,32:65:2303:32:1139:-73.6185,0,-178.328	0/0:209:206,3:206:7384:3:108:0,-52.8417,-654.532	0/0:124:124,0:124:4456:0:0:0,-37.3277,-401.205	0/1:147:97,50:97:3474:50:1771:-115.408,0,-268.619	0/0:93:93,0:93:3331:0:0:0,-27.9958,-300.007	0/1:12:8,4:8:288:4:144:-9.65523,0,-22.655	0/0:141:141,0:141:5068:0:0:0,-42.4452,-456.262	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:5:4,1:4:135:1:36:-2.09312,0,-10.9774	0/0:137:137,0:137:4890:0:0:0,-41.2411,-440.248	0/1:34:20,14:20:716:14:500:-35.1012,0,-54.5327	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.5917	0/0:75:75,0:75:2687:0:0:0,-22.5772,-242.074	0/1:101:63,38:63:2251:38:1368:-93.0168,0,-172.449	0/1:2:1,1:1:36:1:27:-2.09772,0,-2.99621	0/1:156:77,79:77:2764:79:2808:-205.981,0,-202.04	0/0:240:240,0:240:8570:0:0:0,-72.2472,-771.296	0/1:57:32,25:32:1144:25:900:-64.1623,0,-86.1108	0/0:63:63,0:63:2255:0:0:0,-18.9649,-203.212	0/1:113:65,48:65:2336:48:1708:-119.985,0,-176.483	0/0:224:222,2:222:7976:2:72:0,-60.594,-711.021	0/1:34:19,15:19:684:15:523:-37.1616,0,-51.6553	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/1:17:8,9:8:288:9:316:-23.6613,0,-21.1499	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.514	0/1:118:69,48:69:2476:48:1712:-118.781,0,-187.513	0/0:85:84,1:84:2990:1:36:0,-21.9893,-265.734	0/1:164:101,63:101:3602:63:2230:-151.485,0,-275.017	0/1:83:51,31:51:1821:31:1104:-74.7716,0,-139.272	0/1:117:73,44:73:2620:44:1563:-105.734,0,-200.827	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:79:49,30:49:1756:30:1064:-72.2903,0,-134.543	0/0:175:175,0:175:6240:0:0:0,-52.6802,-561.696	0/0:230:230,0:230:8239:0:0:0,-69.2369,-741.52	0/1:72:41,31:41:1476:31:1112:-78.7042,0,-111.462	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:133:131,2:131:4712:2:72:0,-33.2003,-417.4	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:72:34,38:34:1216:38:1343:-99.4952,0,-88.0724	0/1:75:34,41:34:1212:41:1455:-108.661,0,-86.8091	0/1:36:18,18:18:648:18:639:-46.9996,0,-47.8148	0/1:107:60,47:60:2148:47:1680:-119.277,0,-161.377	0/1:80:27,53:27:964:53:1904:-147.493,0,-62.9944	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.621	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247
chr11	26169406	.	G	A	23285.8	PASS	AB=0.425394;ABP=174.735;AC=43;AF=0.228723;AN=188;AO=1522;CIGAR=1X;DP=8190;DPB=8190;DPRA=1.07;EPP=3307.99;EPPR=14190.6;GTI=2;LEN=1;MEANALT=1.08;MQM=59.7516;MQMR=59.9883;NS=94;NUMALT=1;ODDS=3.9601;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54054;QR=237698;RO=6661;RPL=1522;RPP=3307.99;RPPR=14190.6;RPR=0;RUN=1;SAF=1522;SAP=3307.99;SAR=0;SRF=6661;SRP=14467.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:58:58,0:58:2060:0:0:0,-17.4597,-185.669	0/1:42:22,20:22:788:20:693:-50.0401,0,-58.6015	0/0:161:161,0:161:5703:0:0:0,-48.4658,-513.39	0/1:199:108,91:108:3840:91:3240:-231.903,0,-285.891	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.383	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:85:85,0:85:3039:0:0:0,-25.5875,-273.74	0/0:115:115,0:115:4119:0:0:0,-34.6184,-370.894	0/1:88:56,32:56:2012:32:1133:-75.7851,0,-154.862	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:109:56,53:56:1987:53:1892:-137.74,0,-146.291	0/1:73:41,32:41:1472:32:1126:-79.5321,0,-110.801	0/0:51:51,0:51:1769:0:0:0,-15.3525,-159.486	0/1:77:44,33:44:1568:33:1184:-83.6881,0,-118.232	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:29:14,15:14:500:15:525:-38.8482,0,-36.6063	0/1:39:26,13:26:910:13:460:-29.8367,0,-70.4739	0/1:35:23,12:23:824:12:412:-26.8732,0,-63.9473	0/1:145:85,60:85:3035:60:2137:-148.926,0,-229.731	0/0:180:180,0:180:6387:0:0:0,-54.1854,-574.921	0/1:102:46,56:46:1644:56:2000:-149.536,0,-117.544	0/1:86:47,39:47:1688:39:1357:-96.5306,0,-126.318	0/0:63:63,0:63:2253:0:0:0,-18.9649,-203.031	0/0:93:93,0:93:3348:0:0:0,-27.9958,-301.535	0/1:212:144,67:144:5127:67:2347:-147.605,0,-397.695	0/0:190:188,1:188:6732:1:36:0,-53.6562,-602.356	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/0:242:242,0:242:8647:0:0:0,-72.8493,-777.952	0/1:89:57,32:57:2027:32:1148:-76.8218,0,-155.91	0/0:82:82,0:82:2909:0:0:0,-24.6845,-262.045	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/0:28:27,1:27:972:1:36:0,-4.83056,-84.1996	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.689	0/1:195:92,103:92:3249:103:3664:-271.251,0,-233.929	0/1:113:77,36:77:2756:36:1270:-80.5858,0,-214.266	0/0:47:47,0:47:1664:0:0:0,-14.1484,-150.045	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:55:30,25:30:1076:25:892:-64.0415,0,-80.5962	0/0:57:57,0:57:2020:0:0:0,-17.1587,-182.07	0/0:139:139,0:139:5000:0:0:0,-41.8432,-450.145	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.949	0/0:73:73,0:73:2590:0:0:0,-21.9752,-233.349	0/1:96:59,37:59:2108:37:1320:-90.1976,0,-161.09	0/1:94:64,30:64:2272:30:1057:-67.1421,0,-176.435	0/0:208:205,3:205:7321:3:108:0,-52.5407,-648.864	0/0:123:123,0:123:4390:0:0:0,-37.0267,-395.273	0/1:148:99,49:99:3534:49:1756:-113.759,0,-273.716	0/0:93:93,0:93:3319:0:0:0,-27.9958,-298.928	0/1:12:8,4:8:288:4:144:-9.65523,0,-22.655	0/0:139:139,0:139:4983:0:0:0,-41.8432,-448.617	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:134:133,0:133:4743:0:0:0,-40.037,-426.819	0/1:32:20,12:20:716:12:428:-29.2258,0,-55.1348	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.4743	0/0:77:76,1:76:2706:1:36:0,-19.581,-240.185	0/1:101:63,38:63:2243:38:1364:-92.6567,0,-171.729	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:152:77,75:77:2751:75:2662:-194.069,0,-202.075	0/0:235:235,0:235:8401:0:0:0,-70.742,-756.094	0/1:55:30,25:30:1080:25:900:-64.7644,0,-80.9566	0/0:60:60,0:60:2142:0:0:0,-18.0618,-193.046	0/1:114:65,49:65:2336:49:1739:-122.472,0,-176.182	0/0:225:222,2:222:7938:2:72:0,-60.9538,-707.607	0/1:32:18,14:18:644:14:496:-35.3331,0,-48.6576	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:59:59,0:59:2109:0:0:0,-17.7608,-190.077	0/1:16:8,8:8:288:8:265:-19.3556,0,-21.4509	0/0:104:104,0:104:3710:0:0:0,-31.3071,-334.102	0/1:111:66,45:66:2372:45:1596:-110.512,0,-180.323	0/0:82:81,1:81:2887:1:36:0,-21.0862,-256.468	0/1:162:98,62:98:3503:62:2204:-150.072,0,-266.956	0/1:81:50,31:50:1784:31:1104:-75.2872,0,-136.459	0/1:116:70,46:70:2494:46:1636:-112.603,0,-189.793	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:78:48,30:48:1715:30:1053:-71.595,0,-131.155	0/0:170:170,0:170:6054:0:0:0,-51.1751,-544.963	0/0:227:226,0:226:8101:0:0:0,-68.0328,-728.744	0/1:73:42,31:42:1503:31:1104:-77.6825,0,-113.589	0/0:89:89,0:89:3180:0:0:0,-26.7917,-286.425	0/0:51:51,0:51:1802:0:0:0,-15.3525,-162.46	0/0:132:130,2:130:4624:2:72:0,-32.8992,-409.487	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/1:72:35,37:35:1233:37:1311:-96.6167,0,-89.5979	0/1:76:35,41:35:1235:41:1443:-107.279,0,-88.5752	0/1:36:18,18:18:640:18:644:-47.452,0,-47.0922	0/1:106:58,48:58:2057:48:1728:-123.896,0,-153.49	0/1:80:28,52:28:1004:52:1868:-144.234,0,-66.5935	0/0:103:103,0:103:3680:0:0:0,-31.0061,-331.401	0/0:100:100,0:100:3571:0:0:0,-30.103,-321.598
chr11	26169424	.	AACTC	GACTC,GACTT	174097	PASS	AB=0.560221,0.433702;ABP=117.04,141.217;AC=145,43;AF=0.771277,0.228723;AN=188;AO=6615,1580;CIGAR=1X4M,1X3M1X;DP=8261;DPB=8269;DPRA=0,1.02892;EPP=14367.3,3433.94;EPPR=16.0391;GTI=2;LEN=1,5;MEANALT=2.07447,2.5102;MQM=59.9979,59.7646;MQMR=60;NS=94;NUMALT=2;ODDS=5.36939;PAIRED=0,0;PAIREDR=0;PAO=17,17;PQA=586.5,586.5;PQR=0;PRO=6;QA=234558,54287;QR=204;RO=6;RPL=6615,1580;RPP=14367.3,3433.94;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=6615,1580;SAP=14367.3,3433.94;SAR=0,0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57,0:0:0:57,0:2048,0:-184.592,-17.1587,0,-184.592,-17.1587,-184.592	1/2:45:0,23,22:0:0:23,22:796,751:-125.964,-61.2765,-54.3528,-65.0307,0,-58.408	1/1:161:0,161,0:0:0:161,0:5696,0:-512.582,-48.4658,0,-512.582,-48.4658,-512.582	1/2:206:0,108,95:0:0:108,95:3820,3275:-577.303,-266.161,-233.65,-311.29,0,-282.692	1/1:68:0,68,0:0:0:68,0:2399,0:-216.165,-20.47,0,-216.165,-20.47,-216.165	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/1:85:0,85,0:0:0:85,0:3027,0:-272.661,-25.5876,0,-272.661,-25.5876,-272.661	1/1:114:0,114,0:0:0:114,0:4013,0:-361.361,-34.3174,0,-361.361,-34.3174,-361.361	1/2:87:0,53,33:0:0:53,33:1877,1132:-244.841,-91.9357,-75.9812,-152.941,0,-143.007	1/1:41:0,40,0:0:0:40,0:1403,0:-126.333,-12.0412,0,-126.333,-12.0412,-126.333	1/1:58:1,57,0:1:36:57,0:1994,0:-176.131,-13.8615,0,-176.432,-17.1587,-179.37	1/2:106:0,55,51:0:0:55,51:1951,1759:-302.018,-143.061,-126.504,-159.131,0,-143.779	1/2:73:0,41,30:0:0:41,30:1468,1025:-202.909,-83.1832,-70.841,-119.748,0,-110.717	1/1:52:0,52,0:0:0:52,0:1835,0:-165.427,-15.6536,0,-165.427,-15.6536,-165.427	1/2:76:0,43,33:0:0:43,33:1540,1155:-219.917,-94.3212,-81.3769,-125.949,0,-116.015	1/1:63:0,63,0:0:0:63,0:2218,0:-199.884,-18.9649,0,-199.884,-18.9649,-199.884	1/2:29:0,14,15:0:0:14,15:491,514:-82.0292,-42.0692,-37.8548,-40.3067,0,-35.7912	1/2:37:0,24,13:0:0:24,13:841,449:-105.044,-36.6116,-29.3869,-68.724,0,-64.8106	1/2:35:0,22,13:0:0:22,13:784,431:-99.1156,-35.195,-28.5723,-64.2613,0,-60.3479	1/2:149:0,84,64:0:0:84,64:2999,2217:-424.724,-180.219,-154.933,-244.554,0,-225.288	1/1:181:0,179,0:0:0:179,0:6357,0:-571.92,-53.8844,0,-571.92,-53.8844,-571.92	1/2:108:0,47,61:0:0:47,61:1636,2061:-300.345,-167.315,-153.166,-133.315,0,-114.952	1/2:89:0,46,42:0:0:46,42:1643,1406:-247.828,-113.863,-100.015,-133.99,0,-121.347	1/1:64:0,64,0:0:0:64,0:2280,0:-205.403,-19.2659,0,-205.403,-19.2659,-205.403	1/1:96:0,94,0:0:0:94,0:3352,0:-301.612,-28.2968,0,-301.612,-28.2968,-301.612	1/2:217:0,146,69:0:0:146,69:5139,2393:-612.838,-194.484,-150.533,-418.329,0,-397.558	1/1:193:0,189,0:0:0:189,0:6706,0:-603.294,-56.8947,0,-603.294,-56.8947,-603.294	1/1:43:0,43,0:0:0:43,0:1527,0:-137.722,-12.9443,0,-137.722,-12.9443,-137.722	1/1:246:0,246,0:0:0:246,0:8722,0:-784.98,-74.0534,0,-784.98,-74.0534,-784.98	1/2:94:1,55,38:1:29:55,38:1949,1295:-261.278,-102.798,-88.5488,-156.528,0,-147.397	1/1:84:0,83,0:0:0:83,0:2912,0:-262.014,-24.9855,0,-262.014,-24.9855,-262.014	1/2:5:0,1,4:0:0:1,4:36,133:-14.0364,-11.0935,-10.7924,-3.29724,0,-2.09312	1/1:29:0,28,1:0:0:28,1:999,32:-89.9033,-8.42884,0,-87.3262,-5.53056,-87.0252	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:12:0,12,0:0:0:12,0:417,0:-37.8602,-3.61236,0,-37.8602,-3.61236,-37.8602	1/1:46:0,46,0:0:0:46,0:1633,0:-147.257,-13.8474,0,-147.257,-13.8474,-147.257	1/2:200:0,94,105:0:0:94,105:3330,3601:-563.558,-292.288,-263.991,-271.22,0,-239.612	1/2:119:0,79,40:0:0:79,40:2804,1363:-339.394,-110.922,-87.1409,-228.817,0,-216.776	1/1:49:0,49,0:0:0:49,0:1717,0:-154.812,-14.7505,0,-154.812,-14.7505,-154.812	1/1:5:0,5,0:0:0:5,0:171,0:-15.7255,-1.50515,0,-15.7255,-1.50515,-15.7255	1/2:56:0,30,26:0:0:30,26:1058,892:-158.914,-72.7626,-63.7317,-86.4987,0,-78.6719	1/1:56:0,55,0:0:0:55,0:1952,0:-175.741,-16.5567,0,-175.741,-16.5567,-175.741	1/1:139:0,137,0:0:0:137,0:4851,0:-436.466,-41.2411,0,-436.466,-41.2411,-436.466	1/1:79:0,79,0:0:0:79,0:2799,0:-252.149,-23.7814,0,-252.149,-23.7814,-252.149	1/1:70:0,70,0:0:0:70,0:2435,0:-219.403,-21.0721,0,-219.403,-21.0721,-219.403	1/2:98:0,60,38:0:0:60,38:2143,1303:-280.849,-106.122,-88.0602,-175.075,0,-163.636	1/2:95:0,60,33:0:0:60,33:2141,1138:-267.143,-92.5972,-74.5354,-174.698,0,-164.764	1/1:204:1,198,3:1:31:198,3:7031,107:-629.758,-57.1147,0,-621.338,-50.8448,-622.923	1/1:125:0,122,0:0:0:122,0:4339,0:-390.432,-36.7257,0,-390.432,-36.7257,-390.432	1/2:154:0,99,54:0:0:99,54:3524,1861:-438.519,-151.298,-121.496,-287.366,0,-271.111	1/1:93:0,93,0:0:0:93,0:3300,0:-297.219,-27.9958,0,-297.219,-27.9958,-297.219	1/2:12:0,8,4:0:0:8,4:288,143:-35.4731,-11.9713,-9.56306,-23.8592,0,-22.655	1/1:137:3,131,0:3:108:131,0:4646,0:-408.245,-30.6061,0,-409.148,-39.4349,-417.96	1/1:40:0,40,0:0:0:40,0:1413,0:-127.465,-12.0412,0,-127.465,-12.0412,-127.465	1/2:5:0,4,1:0:0:4,1:135,36:-14.2203,-3.29724,-2.09312,-11.2784,0,-10.9774	1/1:137:0,136,0:0:0:136,0:4845,0:-435.949,-40.9401,0,-435.949,-40.9401,-435.949	1/2:34:0,20,14:0:0:20,14:716,4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chr11	26228018	.	TTG	TTT,ATT	141616	PASS	AB=0.468966,0.529443;ABP=34.5491,31.3973;AC=141,47;AF=0.75,0.25;AN=188;AO=4669,2008;CIGAR=2M1X,1X1M1X;DP=6686;DPB=6686;DPRA=10.2596,1.49821;EPP=10124.3,4363.33;EPPR=0;GTI=5;LEN=1,3;MEANALT=1.6129,2.1;MQM=59.9743,59.9258;MQMR=0;NS=94;NUMALT=2;ODDS=0.358526;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=167051,70611;QR=0;RO=0;RPL=2,0;RPP=10124.3,4363.33;RPPR=0;RPR=4667,2008;RUN=1,1;SAF=0,0;SAP=10141.6,4363.33;SAR=4669,2008;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,10,0:0:0:10,0:360,0:-32.3845,-3.0103,0,-32.3845,-3.0103,-32.3845	1/2:84:0,48,36:0:0:48,36:1724,1293:-246.474,-105.837,-91.3874,-140.996,0,-130.159	1/1:123:0,122,1:0:0:122,1:4366,36:-392.753,-36.7257,0,-389.816,-33.4284,-389.515	1/2:185:0,83,102:0:0:83,102:2944,3567:-530.377,-290.521,-265.536,-240.208,0,-209.503	1/2:34:0,15,19:0:0:15,19:540,674:-99.331,-55.2674,-50.7519,-44.4211,0,-38.7015	1/2:23:0,19,4:0:0:19,4:676,144:-67.1988,-12.1095,-6.38993,-55.4484,0,-54.2443	1/1:45:0,45,0:0:0:45,0:1586,0:-143.026,-13.5464,0,-143.026,-13.5464,-143.026	1/1:147:0,147,0:0:0:147,0:5245,0:-472.182,-44.2514,0,-472.182,-44.2514,-472.182	1/2:57:0,20,37:0:0:20,37:716,1292:-163.832,-105.44,-99.4195,-58.7471,0,-47.609	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/1:62:0,62,0:0:0:62,0:2228,0:-200.784,-18.6639,0,-200.784,-18.6639,-200.784	1/2:69:0,38,31:0:0:38,31:1364,1086:-199.983,-88.7157,-77.2766,-111.622,0,-102.29	1/2:96:0,53,43:0:0:53,43:1908,1526:-280.375,-124.689,-108.735,-156.043,0,-143.099	1/1:133:0,132,0:0:0:132,0:4722,0:-424.857,-39.736,0,-424.857,-39.736,-424.857	1/2:63:0,30,33:0:0:30,33:1080,1182:-184.878,-96.7545,-87.7236,-88.4823,0,-78.5484	1/1:66:0,66,0:0:0:66,0:2353,0:-212.029,-19.868,0,-212.029,-19.868,-212.029	1/2:113:0,56,57:0:0:56,57:2011,1979:-325.252,-161.2,-144.342,-164.405,0,-147.247	1/2:88:0,38,50:0:0:38,50:1353,1745:-252.558,-142.28,-130.84,-110.631,0,-95.5794	1/2:42:0,22,20:0:0:22,20:777,704:-120.939,-57.6628,-51.0401,-63.6286,0,-57.608	1/2:117:0,67,50:0:0:67,50:2397,1755:-338.606,-143.179,-123.01,-195.78,0,-180.728	1/1:60:0,60,0:0:0:60,0:2143,0:-192.646,-18.0618,0,-192.646,-18.0618,-192.646	1/2:79:0,21,58:0:0:21,58:741,2037:-226.464,-166.126,-159.805,-60.69,0,-43.2302	1/2:41:0,18,23:0:0:18,23:640,793:-116.921,-64.7611,-59.3425,-52.5108,0,-45.5871	1/1:63:0,63,0:0:0:63,0:2244,0:-202.224,-18.9649,0,-202.224,-18.9649,-202.224	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/2:231:0,104,127:0:0:104,127:3733,4491:-670.637,-366.131,-334.824,-304.862,0,-266.632	1/1:76:0,76,0:0:0:76,0:2705,0:-243.693,-22.8783,0,-243.693,-22.8783,-243.693	1/1:34:0,34,0:0:0:34,0:1215,0:-109.656,-10.235,0,-109.656,-10.235,-109.656	1/1:108:0,108,0:0:0:108,0:3860,0:-347.594,-32.5112,0,-347.594,-32.5112,-347.594	1/2:154:0,68,84:0:0:68,84:2435,2943:-438.075,-239.495,-219.025,-198.614,0,-173.327	1/1:46:0,46,0:0:0:46,0:1648,0:-148.609,-13.8474,0,-148.609,-13.8474,-148.609	2/2:7:0,0,7:0:0:0,7:0,244:-22.2989,-22.2989,-22.2989,-2.10721,-2.10721,0	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:195:0,98,96:0:0:98,96:3524,3390:-563.569,-276.058,-246.557,-287.507,0,-258.609	1/2:184:0,56,128:0:0:56,128:2005,4527:-532.575,-369.067,-352.209,-163.865,0,-125.333	1/1:66:0,66,0:0:0:66,0:2364,0:-213.018,-19.868,0,-213.018,-19.868,-213.018	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:132:0,58,74:0:0:58,74:2084,2596:-381.626,-211.611,-194.152,-170.37,0,-148.094	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/1:85:0,84,1:0:0:84,1:3016,36:-271.311,-25.2865,0,-268.373,-21.9893,-268.072	1/1:91:0,91,0:0:0:91,0:3260,0:-293.621,-27.3937,0,-293.621,-27.3937,-293.621	1/1:48:0,48,0:0:0:48,0:1707,0:-153.915,-14.4494,0,-153.915,-14.4494,-153.915	1/2:49:0,13,36:0:0:13,36:463,1278:-142.223,-104.485,-100.572,-38.0937,0,-27.2566	1/2:109:0,49,60:0:0:49,60:1725,2127:-314.065,-173.636,-158.886,-140.782,0,-122.72	1/1:80:0,79,1:0:0:79,1:2840,36:-255.478,-23.7814,0,-252.54,-20.4841,-252.239	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/2:129:0,63,66:0:0:63,66:2268,2298:-372.275,-187.212,-168.247,-185.417,0,-165.549	1/1:74:0,74,0:0:0:74,0:2648,0:-238.567,-22.2762,0,-238.567,-22.2762,-238.567	1/2:3:0,1,2:0:0:1,2:36,64:-8.42677,-5.47604,-5.17501,-3.29724,0,-2.69518	1/1:87:0,87,0:0:0:87,0:3120,0:-281.026,-26.1896,0,-281.026,-26.1896,-281.026	1/1:34:0,34,0:0:0:34,0:1216,0:-109.747,-10.235,0,-109.747,-10.235,-109.747	1/2:12:0,4,8:0:0:4,8:144,279:-34.7927,-23.0393,-21.8352,-12.1095,0,-9.70126	1/1:89:0,89,0:0:0:89,0:3177,0:-286.145,-26.7917,0,-286.145,-26.7917,-286.145	1/2:17:0,3,14:0:0:3,14:108,470:-47.2217,-38.4052,-37.5021,-9.17208,0,-4.95766	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,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chr11	26252658	.	A	G	145244	PASS	AB=0.464771;ABP=53.8058;AC=142;AF=0.755319;AN=188;AO=6913;CIGAR=1X;DP=9453;DPB=9453;DPRA=0;EPP=14901.7;EPPR=5462.18;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9644;MQMR=59.9905;NS=94;NUMALT=1;ODDS=1.5699;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246575;QR=90896;RO=2534;RPL=13;RPP=14901.7;RPPR=5462.18;RPR=6900;RUN=1;SAF=6913;SAP=15014.4;SAR=0;SRF=2534;SRP=5505.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,59:0:0:59:2107:-189.893,-17.7608,0	0/1:61:31,30:31:1108:30:1072:-78.4296,0,-81.6682	1/1:139:0,139:0:0:139:4957:-446.28,-41.8432,0	0/1:237:128,109:128:4592:109:3890:-278.932,0,-342.099	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	1/1:150:0,149:0:0:149:5330:-479.473,-44.8535,0	0/1:147:79,68:79:2828:68:2423:-174.074,0,-210.507	1/1:100:0,100:0:0:100:3564:-320.965,-30.103,0	1/1:41:0,41:0:0:41:1450:-130.794,-12.3422,0	0/1:123:56,67:56:2008:67:2391:-178.42,0,-143.967	0/1:109:55,54:55:1976:54:1913:-139.634,0,-145.302	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	0/1:96:49,47:49:1764:47:1669:-121.597,0,-130.145	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	0/1:54:26,28:26:936:28:987:-72.8874,0,-68.3038	0/1:58:29,29:29:1040:29:1044:-76.8151,0,-76.4546	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	0/1:283:161,122:161:5784:122:4352:-306.664,0,-435.48	1/1:211:0,210:0:0:210:7463:-671.356,-63.2163,0	0/1:90:52,38:52:1868:38:1352:-94.8625,0,-141.307	0/1:147:81,66:81:2916:66:2364:-168.767,0,-218.4	1/1:83:0,83:0:0:83:2939:-264.739,-24.9855,0	1/1:79:0,79:0:0:79:2816:-253.677,-23.7814,0	0/1:319:158,161:158:5668:161:5751:-421.678,0,-414.209	1/1:142:0,142:0:0:142:5072:-456.309,-42.7463,0	1/1:39:0,39:0:0:39:1382:-124.677,-11.7402,0	1/1:301:1,300:1:36:300:10684:-957.876,-87.0118,0	0/1:133:72,61:72:2580:61:2172:-155.71,0,-192.412	1/1:134:0,134:0:0:134:4784:-430.718,-40.338,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	0/1:205:102,103:102:3672:103:3670:-268.687,0,-268.97	0/1:156:87,69:87:3102:69:2471:-175.682,0,-232.444	1/1:53:0,53:0:0:53:1882:-169.616,-15.9546,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:131:75,56:75:2696:56:1981:-139.127,0,-203.449	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	1/1:173:0,173:0:0:173:6194:-557.556,-52.0782,0	1/1:71:0,71:0:0:71:2535:-228.401,-21.3731,0	1/1:75:0,75:0:0:75:2683:-241.714,-22.5773,0	0/1:112:59,53:59:2120:53:1887:-136.392,0,-157.344	0/1:159:78,80:78:2788:80:2852:-208.996,0,-203.238	1/1:159:1,158:1:36:158:5639:-504.034,-44.2655,0	1/1:150:0,150:0:0:150:5318:-478.742,-45.1545,0	0/1:112:64,48:64:2300:48:1720:-121.37,0,-173.545	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	0/1:9:5,4:5:180:4:135:-9.77324,0,-13.8428	1/1:119:0,119:0:0:119:4246:-382.319,-35.8226,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:167:0,166:0:0:166:5901:-530.843,-49.971,0	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:13:1,12:1:36:12:432:-35.6229,-0.315115,0	1/1:85:1,84:1:36:84:3008:-267.353,-21.9893,0	0/1:106:52,54:52:1868:54:1931:-142.157,0,-136.49	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:244:150,94:150:5376:94:3355:-228.716,0,-410.52	1/1:229:4,225:4:144:225:7984:-705.247,-55.6223,0	0/1:74:53,21:53:1896:21:756:-46.091,0,-148.642	0/1:90:42,48:42:1508:48:1699:-126.099,0,-108.922	0/1:208:111,97:111:3969:97:3439:-247.11,0,-294.785	1/1:122:3,118:3:108:118:4196:-367.749,-26.7093,0	0/1:33:12,21:12:432:21:752:-58.0723,0,-29.2872	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:36:24,12:24:848:12:428:-28.0217,0,-65.8026	1/1:67:0,67:0:0:67:2383:-214.728,-20.169,0	0/1:107:58,49:58:2076:49:1752:-125.752,0,-154.9	1/1:211:0,211:0:0:211:7506:-675.52,-63.5173,0	0/1:152:85,67:85:3056:67:2404:-170.86,0,-229.512	0/1:79:44,35:44:1580:35:1243:-88.3925,0,-118.71	0/1:167:92,75:92:3281:75:2683:-191.442,0,-245.237	0/1:24:9,15:9:324:15:531:-40.8972,0,-22.2811	0/1:124:66,58:66:2364:58:2071:-149.332,0,-175.691	1/1:170:0,170:0:0:170:6049:-544.516,-51.1751,0	1/1:331:1,329:1:36:329:11770:-1055.56,-96.1015,0	0/1:81:35,46:35:1256:46:1648:-124.225,0,-88.9619	1/1:107:0,107:0:0:107:3824:-344.358,-32.2102,0	1/1:52:0,52:0:0:52:1856:-167.319,-15.6536,0	1/1:141:0,141:0:0:141:5017:-451.672,-42.4452,0	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	0/1:98:48,50:48:1724:50:1800:-132.78,0,-125.944	0/1:78:36,42:36:1296:42:1496:-111.454,0,-93.4636	0/1:41:22,19:22:792:19:684:-49.5481,0,-59.2634	0/1:71:44,27:44:1580:27:972:-66.4248,0,-121.118	0/1:66:52,14:52:1872:14:496:-25.1063,0,-148.891	1/1:109:1,108:1:36:108:3849:-343.008,-29.214,0	1/1:140:0,140:0:0:140:5011:-451.136,-42.1442,0
chr11	26252710	.	G	A	150144	PASS	AB=0.514684;ABP=11.7469;AC=141;AF=0.758065;AN=186;AO=7194;CIGAR=1X;DP=9473;DPB=9473;DPRA=0;EPP=15624.6;EPPR=4940.94;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.9805;MQMR=59.9877;NS=93;NUMALT=1;ODDS=0.859383;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255598;QR=80692;RO=2278;RPL=0;RPP=15624.6;RPPR=4949.62;RPR=7194;RUN=1;SAF=0;SAP=15624.6;SAR=7194;SRF=1;SRP=4940.94;SRR=2277;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:72:40,32:40:1411:32:1152:-82.316,0,-105.612	1/1:194:0,194:0:0:194:6865:-617.921,-58.3998,0	0/1:352:161,191:161:5708:191:6815:-507.459,0,-407.877	0/1:28:12,16:12:424:16:551:-41.4851,0,-30.0676	0/1:14:3,11:3:108:11:385:-30.7698,0,-5.86075	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:178:1,177:1:36:177:6245:-558.441,-49.9851,0	0/1:83:49,34:49:1701:34:1205:-83.7694,0,-128.385	1/1:108:0,108:0:0:108:3820:-343.996,-32.5112,0	1/1:50:0,50:0:0:50:1769:-159.491,-15.0515,0	0/1:108:68,40:68:2381:40:1415:-95.1353,0,-182.031	0/1:90:43,47:43:1531:47:1636:-120.431,0,-110.99	1/1:65:1,64:1:36:64:2284:-202.224,-15.9687,0	0/1:76:31,45:31:1108:45:1604:-121.772,0,-77.1527	1/1:73:0,73:0:0:73:2595:-233.797,-21.9752,0	0/1:53:26,27:26:932:27:956:-70.4011,0,-68.2443	0/1:35:19,16:19:652:16:554:-39.6489,0,-48.4622	0/1:19:11,8:11:374:8:288:-20.5478,0,-28.2669	0/1:257:106,151:106:3781:151:5376:-406.606,0,-263.123	1/1:238:0,238:0:0:238:8419:-757.719,-71.6451,0	0/1:95:53,42:53:1875:42:1491:-105.885,0,-140.428	0/1:101:48,53:48:1707:53:1881:-139.159,0,-123.511	1/1:44:0,44:0:0:44:1543:-139.157,-13.2453,0	1/1:41:0,41:0:0:41:1425:-128.541,-12.3422,0	0/1:331:160,171:160:5688:171:6073:-447.031,0,-412.4	1/1:135:1,134:1:36:134:4779:-426.667,-37.0408,0	1/1:41:1,40:1:36:40:1423:-124.768,-8.74396,0	1/1:374:0,374:0:0:374:13322:-1198.78,-112.585,0	0/1:141:75,66:75:2648:66:2376:-171.652,0,-196.121	1/1:119:0,119:0:0:119:4242:-381.96,-35.8226,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:186:89,97:89:3162:97:3468:-256.341,0,-228.814	0/1:87:46,41:46:1612:41:1454:-104.965,0,-119.175	1/1:32:0,32:0:0:32:1136:-102.549,-9.63296,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:94:46,48:46:1656:48:1705:-125.437,0,-121.027	1/1:25:0,25:0:0:25:883:-79.7875,-7.52575,0	1/1:152:0,151:0:0:151:5345:-480.824,-45.4555,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	0/1:134:61,73:61:2158:73:2597:-193.639,0,-154.148	0/1:125:62,63:62:2194:63:2199:-160.541,0,-160.096	1/1:220:0,220:0:0:220:7818:-703.648,-66.2266,0	1/1:88:0,88:0:0:88:3162:-284.804,-26.4906,0	0/1:175:84,91:84:2950:91:3255:-240.49,0,-213.053	1/1:94:0,94:0:0:94:3351:-301.807,-28.2968,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:139:1,138:1:36:138:4943:-441.421,-38.2449,0	1/1:54:0,54:0:0:54:1906:-171.814,-16.2556,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:192:0,192:0:0:192:6826:-614.414,-57.7978,0	0/1:26:17,9:17:597:9:324:-21.6791,0,-46.2293	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:48:0,48:0:0:48:1695:-152.835,-14.4494,0	0/1:84:35,49:35:1247:49:1707:-128.624,0,-87.2476	.:.:.:.:.:.:.:.	0/1:282:140,142:140:4959:142:5041:-368.946,0,-361.569	1/1:229:2,227:2:68:227:8047:-717.787,-62.4782,0	0/1:49:20,29:20:711:29:1044:-79.5243,0,-49.5652	0/1:106:51,55:51:1795:55:1959:-144.675,0,-129.92	0/1:227:100,127:100:3528:127:4504:-337.194,0,-249.395	1/1:129:0,129:0:0:129:4589:-413.177,-38.8329,0	0/1:25:14,11:14:500:11:377:-26.7322,0,-37.8104	1/1:70:0,70:0:0:70:2490:-224.352,-21.0721,0	1/1:48:0,48:0:0:48:1700:-153.284,-14.4494,0	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	1/1:98:0,98:0:0:98:3459:-311.523,-29.5009,0	0/1:120:68,52:68:2419:52:1855:-131.105,0,-181.842	1/1:128:0,128:0:0:128:4549:-409.578,-38.5318,0	0/1:312:143,169:143:5074:169:6060:-451.58,0,-362.882	0/1:51:29,22:29:1035:22:772:-54.4482,0,-78.1105	0/1:106:48,58:48:1720:58:2068:-154.474,0,-123.176	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:178:78,100:78:2756:100:3574:-268.284,0,-194.698	1/1:240:3,237:3:108:237:8416:-747.331,-62.172,0	1/1:281:0,281:0:0:281:10028:-902.458,-84.5894,0	0/1:51:24,27:24:852:27:948:-70.28,0,-61.6479	1/1:105:0,105:0:0:105:3696:-332.843,-31.6082,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:130:2,128:2:72:128:4587:-406.157,-32.2972,0	1/1:27:0,27:0:0:27:955:-86.2648,-8.12781,0	0/1:88:50,38:50:1768:38:1319:-92.5153,0,-132.91	0/1:85:40,45:40:1414:45:1608:-119.423,0,-101.968	0/1:33:18,15:18:635:15:536:-38.6408,0,-47.543	0/1:50:24,26:24:845:26:915:-67.6129,0,-61.3156	0/1:92:50,42:50:1792:42:1497:-107.328,0,-133.868	1/1:195:0,195:0:0:195:6869:-618.284,-58.7009,0	1/1:121:2,119:2:72:119:4229:-373.954,-29.5879,0
chr11	26252736	.	C	A	38504.6	PASS	AB=0.488617;ABP=8.25056;AC=45;AF=0.241935;AN=186;AO=2286;CIGAR=1X;DP=9457;DPB=9457;DPRA=1.26397;EPP=4897.75;EPPR=15237.6;GTI=0;LEN=1;MEANALT=1.07692;MQM=59.9926;MQMR=59.9876;NS=93;NUMALT=1;ODDS=0.604756;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=81684;QR=255937;RO=7167;RPL=2278;RPP=4897.75;RPPR=15246.2;RPR=8;RUN=1;SAF=0;SAP=4967;SAR=2286;SRF=1;SRP=15557.3;SRR=7166;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:46,0:46:1610:0:0:0,-13.8474,-145.185	0/1:74:34,40:34:1220:40:1420:-105.821,0,-87.8306	0/0:192:192,0:192:6841:0:0:0,-57.7978,-615.76	0/1:357:193,164:193:6913:164:5876:-421.482,0,-514.767	0/1:27:16,11:16:568:11:393:-27.583,0,-43.3241	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/0:173:172,1:172:6099:1:36:0,-48.4799,-545.412	0/1:77:30,47:30:1072:47:1669:-127.317,0,-73.6131	0/0:108:108,0:108:3822:0:0:0,-32.5112,-344.177	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:105:38,66:38:1336:66:2352:-180.272,0,-88.8704	0/1:87:42,45:42:1500:45:1611:-119.09,0,-109.105	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:76:46,30:46:1648:30:1076:-74.2746,0,-125.73	0/0:76:76,0:76:2674:0:0:0,-22.8783,-240.904	0/1:52:25,27:25:896:27:968:-71.7838,0,-65.3068	0/1:30:11,19:11:396:19:680:-52.4983,0,-26.9518	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:256:151,105:151:5395:105:3768:-262.255,0,-408.615	0/0:232:232,0:232:8305:0:0:0,-69.839,-747.457	0/1:98:42,56:42:1504:56:1999:-150.682,0,-106.154	0/1:101:55,46:55:1972:46:1634:-116.943,0,-147.306	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.931	0/1:337:176,161:176:6253:161:5762:-417.245,0,-461.419	0/0:139:139,0:139:4983:0:0:0,-41.8432,-448.617	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:374:374,0:374:13372:0:0:0,-112.585,-1203.28	0/1:143:67,76:67:2392:76:2723:-202.265,0,-172.49	0/0:122:122,0:122:4312:0:0:0,-36.7257,-388.255	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:185:96,89:96:3440:89:3180:-230.734,0,-254.122	0/1:82:39,43:39:1385:43:1539:-114.118,0,-100.262	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:93:47,46:47:1680:46:1643:-120.157,0,-123.491	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:153:153,0:153:5454:0:0:0,-46.0576,-490.983	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.956	0/1:136:71,65:71:2514:65:2320:-168.12,0,-185.569	0/1:127:64,63:64:2296:63:2260:-165.431,0,-168.67	0/0:221:219,1:219:7790:1:36:0,-62.9881,-697.532	0/0:93:93,0:93:3315:0:0:0,-27.9958,-298.569	0/1:174:87,87:87:3124:87:3107:-227.478,0,-229.006	0/0:93:93,0:93:3321:0:0:0,-27.9958,-299.107	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:142:142,0:142:5100:0:0:0,-42.7463,-459.141	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:187:187,0:187:6696:0:0:0,-56.2926,-602.716	0/1:25:10,15:10:360:15:523:-39.8727,0,-25.2186	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:85:49,36:49:1756:36:1288:-90.636,0,-132.736	.:.:.:.:.:.:.:.	0/1:285:142,143:142:5090:143:5092:-372.633,0,-372.448	0/0:217:215,2:215:7703:2:72:0,-58.4868,-686.465	0/1:49:30,19:30:1072:19:680:-46.7787,0,-82.042	0/1:107:54,52:54:1914:52:1854:-134.869,0,-140.267	0/1:228:126,101:126:4485:101:3580:-253.842,0,-335.255	0/0:128:128,0:128:4554:0:0:0,-38.5318,-410.025	0/1:25:11,14:11:396:14:492:-37.086,0,-28.457	0/0:69:68,1:68:2428:1:36:0,-17.1728,-215.178	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	0/0:102:102,0:102:3615:0:0:0,-30.7051,-325.545	0/1:119:51,68:51:1827:68:2427:-182.863,0,-128.888	0/0:130:130,0:130:4637:0:0:0,-39.1339,-417.493	0/1:313:170,143:170:6084:143:5128:-367.439,0,-453.437	0/1:50:22,28:22:788:28:1008:-75.9849,0,-56.1933	0/1:107:57,50:57:2040:50:1784:-128.633,0,-151.662	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:178:98,80:98:3497:80:2864:-204.414,0,-261.356	0/0:239:235,4:235:8381:4:133:0,-59.6493,-741.729	0/0:279:279,0:279:9982:0:0:0,-83.9874,-898.317	0/1:51:27,24:27:972:24:864:-62.73,0,-72.4454	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.123	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.531	0/0:129:128,1:128:4588:1:32:0,-35.6336,-409.885	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7906	0/1:84:35,49:35:1260:49:1756:-133.037,0,-88.419	0/1:82:42,40:42:1512:40:1436:-104.853,0,-111.69	0/1:34:16,18:16:568:18:648:-48.4169,0,-41.2168	0/1:48:24,24:24:856:24:847:-62.0993,0,-62.9117	0/1:94:43,51:43:1525:51:1828:-136.504,0,-109.244	0/0:195:195,0:195:6975:0:0:0,-58.7008,-627.784	0/0:120:119,1:119:4276:1:36:0,-32.5253,-381.418
chr11	26263211	.	C	T	63513.5	PASS	AB=0.496847;ABP=3.28413;AC=137;AF=0.744565;AN=184;AO=4717;CIGAR=1X;DP=6328;DPB=6328;DPRA=69.5275;EPP=10245.8;EPPR=3499.08;GTI=3;LEN=1;MEANALT=1.01099;MQM=28.2468;MQMR=29.0596;NS=92;NUMALT=1;ODDS=0.605749;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167923;QR=57401;RO=1610;RPL=0;RPP=10245.8;RPPR=3499.08;RPR=4717;RUN=1;SAF=0;SAP=10245.8;SAR=4717;SRF=0;SRP=3499.08;SRR=1610;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1635:-115.676,-13.8474,0	0/1:88:44,43:44:1572:43:1540:-82.8843,0,-88.3062	1/1:68:0,68:0:0:68:2408:-171.883,-20.47,0	0/1:151:59,92:59:2112:92:3277:-179.059,0,-104.207	0/1:41:20,21:20:720:21:744:-39.2446,0,-38.7193	0/1:51:27,24:27:951:24:847:-45.2345,0,-54.8206	1/1:131:0,131:0:0:131:4624:-317.634,-39.4349,0	1/1:102:1,101:1:36:101:3591:-249.897,-27.3175,0	0/1:64:43,21:43:1540:21:756:-34.4085,0,-93.2065	1/1:47:0,47:0:0:47:1680:-114.548,-14.1484,0	1/1:17:0,17:0:0:17:604:-40.8071,-5.11751,0	0/1:23:11,12:11:387:12:432:-23.8261,0,-21.7595	0/1:38:17,21:17:608:21:744:-42.029,0,-33.1592	1/1:48:0,48:0:0:48:1724:-121.576,-14.4494,0	0/1:32:8,24:8:284:24:845:-46.8328,0,-10.8721	1/1:24:0,24:0:0:24:860:-61.2033,-7.22472,0	0/1:20:3,17:3:104:17:608:-37.1796,0,-2.5768	0/1:32:10,22:10:360:22:772:-44.0286,0,-16.7822	0/1:16:7,9:7:228:9:324:-19.0183,0,-12.6341	0/1:101:66,35:66:2359:35:1251:-53.9221,0,-137.192	1/1:62:0,62:0:0:62:2220:-156.804,-18.6639,0	0/1:89:60,29:60:2144:29:1028:-44.7119,0,-121.186	0/1:80:35,45:35:1252:45:1608:-86.4595,0,-64.8114	1/1:116:0,116:0:0:116:4129:-292.212,-34.9195,0	1/1:28:0,28:0:0:28:1004:-71.2854,-8.42884,0	0/1:344:155,189:155:5546:189:6752:-358.493,0,-277.591	1/1:113:1,112:1:36:112:3996:-276.136,-30.4954,0	1/1:13:1,12:1:36:12:432:-26.5854,-0.392382,0	1/1:116:0,116:0:0:116:4111:-280.862,-34.9195,0	0/1:112:66,46:66:2360:46:1644:-82.7765,0,-133.898	1/1:112:2,110:2:72:110:3901:-260.212,-27.0602,0	0/1:11:4,7:4:144:7:237:-14.0263,0,-7.12667	1/1:16:0,16:0:0:16:576:-40.9057,-4.81648,0	1/1:5:0,5:0:0:5:180:-12.977,-1.50515,0	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:356:-25.5833,-3.0103,0	0/1:81:36,45:36:1288:45:1616:-84.4565,0,-64.3959	0/1:183:97,86:97:3462:86:3057:-161.681,0,-190.573	1/1:32:0,32:0:0:32:1140:-80.2239,-9.63296,0	.:.:.:.:.:.:.:.	0/1:115:75,40:75:2669:40:1420:-65.7421,0,-155.176	1/1:20:0,20:0:0:20:716:-49.947,-6.0206,0	1/1:122:0,122:0:0:122:4355:-306.501,-36.7257,0	1/1:31:0,31:0:0:31:1104:-75.6063,-9.33193,0	1/1:23:0,23:0:0:23:811:-57.2734,-6.92369,0	0/1:151:81,70:81:2900:70:2499:-126.754,0,-155.498	0/1:99:60,39:60:2140:39:1369:-67.0518,0,-126.772	1/1:140:0,140:0:0:140:4966:-340.538,-42.1442,0	1/1:66:0,66:0:0:66:2348:-160.7,-19.868,0	0/1:88:49,39:49:1741:39:1392:-69.6795,0,-97.3044	1/1:129:2,127:2:72:127:4524:-302.743,-33.6341,0	0/1:7:1,6:1:36:6:216:-12.0776,0,-0.713871	1/1:79:1,78:1:36:78:2796:-191.448,-20.1882,0	1/1:38:0,38:0:0:38:1348:-92.2946,-11.4391,0	0/1:15:10,5:10:356:5:180:-8.46152,0,-21.795	1/1:101:0,101:0:0:101:3612:-255.554,-30.404,0	0/1:64:36,28:36:1275:28:1004:-49.4638,0,-71.8548	1/1:6:0,6:0:0:6:203:-14.3763,-1.80618,0	1/1:27:0,27:0:0:27:964:-63.5242,-8.12781,0	1/1:46:0,46:0:0:46:1637:-116.427,-13.8474,0	0/1:80:29,51:29:1044:51:1824:-101.743,0,-49.8299	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.82108	0/1:152:93,59:93:3328:59:2116:-97.107,0,-182.927	1/1:172:3,169:3:108:169:6037:-404.344,-43.8781,0	0/1:40:18,22:18:632:22:777:-43.3887,0,-33.5899	0/1:43:27,16:27:951:16:572:-26.3281,0,-55.3251	0/1:176:78,98:78:2764:98:3512:-185.443,0,-143.769	1/1:88:0,88:0:0:88:3121:-212.79,-26.4906,0	0/1:6:1,5:1:36:5:180:-11.1708,0,-1.0149	1/1:91:0,91:0:0:91:3245:-225.138,-27.3937,0	1/1:57:0,57:0:0:57:2015:-138.764,-17.1587,0	0/1:26:11,15:11:377:15:536:-29.3886,0,-19.4481	1/1:133:1,132:1:36:132:4682:-327.644,-36.516,0	0/1:25:13,12:13:460:12:424:-23.1795,0,-26.518	1/1:151:0,151:0:0:151:5351:-378.691,-45.4555,0	0/1:71:42,29:42:1487:29:1010:-48.6228,0,-84.5947	0/1:106:47,59:47:1679:59:2100:-117.042,0,-90.4931	0/1:71:48,23:48:1694:23:818:-36.1847,0,-103.218	0/1:11:6,5:6:212:5:180:-9.66564,0,-12.5484	0/1:65:34,31:34:1220:31:1112:-59.3354,0,-66.6388	1/1:60:0,60:0:0:60:2129:-150.841,-18.0618,0	1/1:172:0,172:0:0:172:6129:-420.767,-51.7772,0	0/1:75:25,50:25:900:50:1775:-99.8854,0,-41.2155	1/1:26:0,26:0:0:26:919:-64.0449,-7.82678,0	1/1:45:0,45:0:0:45:1590:-108.356,-13.5464,0	1/1:63:2,61:2:72:61:2176:-143.621,-12.3098,0	1/1:30:0,30:0:0:30:1068:-76.1875,-9.0309,0	0/1:34:11,23:11:396:23:819:-47.1891,0,-18.7926	0/1:31:11,20:11:387:20:712:-41.6274,0,-19.3513	0/1:8:2,6:2:72:6:216:-13.1077,0,-2.70256	0/1:33:11,22:11:396:22:787:-44.9543,0,-18.2768	0/1:23:8,15:8:288:15:540:-30.2887,0,-13.9463	1/1:89:0,89:0:0:89:3180:-218.899,-26.7917,0	1/1:44:0,44:0:0:44:1554:-106.915,-13.2453,0
chr11	26263223	.	CCG	CCA,GCA	91720.4	PASS	AB=0.492408,0.502944;ABP=4.62595,3.25322;AC=138,46;AF=0.75,0.25;AN=184;AO=4825,1633;CIGAR=2M1X,1X1M1X;DP=6480;DPB=6480;DPRA=71.1978,1.18425;EPP=10480.4,3549.02;EPPR=11.6962;GTI=2;LEN=1,3;MEANALT=1.72527,2.18;MQM=28.2562,28.9712;MQMR=51;NS=92;NUMALT=2;ODDS=0.484322;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=172742,57822;QR=141;RO=4;RPL=0,0;RPP=10480.4,3549.02;RPPR=11.6962;RPR=4825,1633;RUN=1,1;SAF=0,0;SAP=10480.4,3549.02;SAR=4825,1633;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45,0:0:0:45,0:1616,0:-114.276,-13.5464,0,-114.276,-13.5464,-114.276	1/2:92:0,47,45:0:0:47,45:1680,1608:-208.775,-103.785,-89.6361,-105.276,0,-91.7293	1/1:71:0,71,0:0:0:71,0:2544,0:-179.136,-21.3731,0,-179.136,-21.3731,-179.136	1/2:153:0,93,60:0:0:93,60:3316,2151:-331.994,-134.234,-106.238,-198.037,0,-179.975	1/2:43:0,21,22:0:0:21,22:748,784:-94.3454,-49.2684,-42.9468,-45.3533,0,-38.7306	1/2:52:0,25,27:0:0:25,27:900,962:-117.975,-62.3715,-54.8457,-55.8882,0,-47.7604	1/1:133:0,133,0:0:0:133,0:4752,0:-325.131,-40.037,0,-325.131,-40.037,-325.131	1/1:109:0,108,0:0:0:108,0:3834,0:-270.369,-32.5112,0,-270.369,-32.5112,-270.369	1/2:67:0,22,45:0:0:22,45:792,1584:-152.435,-103.128,-96.5055,-49.5907,0,-36.0444	1/1:50:0,50,0:0:0:50,0:1784,0:-121.8,-15.0515,0,-121.8,-15.0515,-121.8	1/1:18:0,18,0:0:0:18,0:644,0:-43.344,-5.41854,0,-43.344,-5.41854,-43.344	1/2:23:0,12,11:0:0:12,11:428,386:-52.151,-25.3862,-21.7738,-27.049,0,-23.7377	1/2:39:0,22,17:0:0:22,17:792,595:-88.3364,-38.9565,-32.3339,-49.6646,0,-44.5471	1/1:48:0,48,0:0:0:48,0:1724,0:-121.256,-14.4494,0,-121.256,-14.4494,-121.256	1/2:32:0,24,8:0:0:24,8:844,286:-67.0514,-18.1489,-10.9242,-49.1787,0,-46.7704	1/1:25:0,25,0:0:0:25,0:896,0:-63.7423,-7.52575,0,-63.7423,-7.52575,-63.7423	1/1:20:0,18,2:0:0:18,2:644,72:-46.0834,-5.41854,0,-41.4599,-0.505348,-40.8579	1/2:32:0,22,10:0:0:22,10:788,358:-70.5487,-23.361,-16.7384,-47.4719,0,-44.4616	1/2:16:1,8,7:1:36:8,7:284,249:-30.6183,-13.1078,-13.6396,-14.8064,0,-15.6392	1/2:102:0,34,67:0:0:34,67:1207,2389:-221.846,-149.711,-139.476,-72.17,0,-52.001	1/1:62:0,62,0:0:0:62,0:2215,0:-156.591,-18.6639,0,-156.591,-18.6639,-156.591	1/2:90:2,28,60:2:69:28,60:999,2128:-182.347,-123.339,-120.498,-53.9512,0,-41.4793	1/2:81:0,45,36:0:0:45,36:1620,1269:-176.682,-79.7417,-66.1953,-97.2162,0,-86.3792	1/1:120:0,120,0:0:0:120,0:4295,0:-302.833,-36.1236,0,-302.833,-36.1236,-302.833	1/1:27:0,27,0:0:0:27,0:968,0:-68.7464,-8.12781,0,-68.7464,-8.12781,-68.7464	1/2:350:0,191,156:0:0:191,156:6816,5569:-744.862,-336.247,-278.75,-408.637,0,-361.676	1/1:115:0,115,0:0:0:115,0:4140,0:-289.333,-34.6185,0,-289.333,-34.6185,-289.333	1/1:13:0,13,0:0:0:13,0:468,0:-33.2811,-3.91339,0,-33.2811,-3.91339,-33.2811	1/1:118:0,117,0:0:0:117,0:4208,0:-284.755,-35.2205,0,-284.755,-35.2205,-284.755	1/2:114:0,47,67:0:0:47,67:1662,2378:-252.88,-149.429,-135.28,-103.73,0,-83.5615	1/1:119:0,119,0:0:0:119,0:4272,0:-291.041,-35.8226,0,-291.041,-35.8226,-291.041	1/2:11:0,7,4:0:0:7,4:248,144:-24.811,-9.23388,-7.12667,-15.8587,0,-14.6546	1/1:16:0,16,0:0:0:16,0:576,0:-40.9057,-4.81648,0,-40.9057,-4.81648,-40.9057	1/1:5:0,5,0:0:0:5,0:180,0:-12.977,-1.50515,0,-12.977,-1.50515,-12.977	.:.:.:.:.:.:.:.	1/1:10:0,10,0:0:0:10,0:360,0:-25.6718,-3.0103,0,-25.6718,-3.0103,-25.6718	1/2:84:0,48,36:0:0:48,36:1710,1289:-179.017,-77.9579,-63.5084,-101.329,0,-90.4923	1/2:190:0,88,101:0:0:88,101:3160,3585:-420.947,-224.814,-198.323,-196.177,0,-165.773	1/1:33:0,33,0:0:0:33,0:1186,0:-83.0103,-9.93399,0,-83.0103,-9.93399,-83.0103	.:.:.:.:.:.:.:.	1/2:117:0,41,76:0:0:41,76:1464,2673:-258.891,-168.39,-156.048,-90.7797,0,-67.9014	1/1:20:0,20,0:0:0:20,0:720,0:-49.9527,-6.0206,0,-49.9527,-6.0206,-49.9527	1/1:121:0,121,0:0:0:121,0:4326,0:-304.051,-36.4246,0,-304.051,-36.4246,-304.051	1/1:30:0,30,0:0:0:30,0:1061,0:-72.5198,-9.0309,0,-72.5198,-9.0309,-72.5198	1/1:22:0,22,0:0:0:22,0:784,0:-55.073,-6.62266,0,-55.073,-6.62266,-55.073	1/2:155:0,72,81:0:0:72,81:2584,2868:-329.297,-173.735,-152.061,-155.489,0,-131.105	1/2:106:0,44,62:0:0:44,62:1580,2164:-237.683,-141.09,-127.845,-96.874,0,-78.2102	1/1:144:0,142,0:0:0:142,0:5088,0:-346.992,-42.7463,0,-346.992,-42.7463,-346.992	1/1:66:0,66,0:0:0:66,0:2376,0:-161.542,-19.868,0,-161.542,-19.868,-161.542	1/2:90:0,40,50:0:0:40,50:1421,1737:-195.281,-109.537,-97.4959,-86.0171,0,-70.9656	1/1:130:0,128,2:0:0:128,2:4585,70:-310.012,-38.5318,0,-305.718,-33.9668,-305.116	1/2:8:0,6,2:0:0:6,2:216,72:-16.8605,-4.75799,-2.95181,-12.3786,0,-11.7765	1/1:78:0,77,1:0:0:77,1:2760,36:-191.983,-23.1793,0,-189.049,-19.8872,-188.748	1/1:39:0,39,0:0:0:39,0:1404,0:-94.9577,-11.7402,0,-94.9577,-11.7402,-94.9577	1/2:15:0,5,10:0:0:5,10:180,360:-34.5918,-23.4049,-21.8997,-11.4718,0,-8.46152	1/1:107:0,106,0:0:0:106,0:3795,0:-268.335,-31.9092,0,-268.335,-31.9092,-268.335	1/2:66:0,27,39:0:0:27,39:972,1355:-144.13,-86.1917,-78.0639,-58.2129,0,-46.4728	1/1:7:0,6,0:0:0:6,0:216,0:-14.8066,-1.80618,0,-14.8066,-1.80618,-14.8066	1/1:27:0,27,0:0:0:27,0:972,0:-63.6715,-8.1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chr11	26263230	.	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chr11	26263236	.	T	C	65904.2	PASS	AB=0.51525;ABP=9.23585;AC=138;AF=0.75;AN=184;AO=4794;CIGAR=1X;DP=6302;DPB=6302;DPRA=69.2418;EPP=10300.4;EPPR=3262.4;GTI=3;LEN=1;MEANALT=1.03297;MQM=28.2438;MQMR=29.0485;NS=92;NUMALT=1;ODDS=0.946846;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171254;QR=52470;RO=1505;RPL=4781;RPP=10300.4;RPPR=3262.4;RPR=13;RUN=1;SAF=0;SAP=10413;SAR=4794;SRF=0;SRP=3271.08;SRR=1505;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45:0:0:45:1597:-113.48,-13.5464,0	0/1:89:43,46:43:1491:46:1648:-90.1813,0,-83.0625	1/1:70:0,70:0:0:70:2491:-176.441,-21.0721,0	0/1:145:52,93:52:1826:93:3329:-182.083,0,-86.8931	0/1:43:22,21:22:776:21:745:-38.665,0,-42.8431	0/1:49:24,25:24:841:25:892:-48.4875,0,-47.2594	1/1:133:0,133:0:0:133:4759:-324.015,-40.037,0	1/1:108:1,107:1:32:107:3824:-266.348,-29.3248,0	0/1:62:40,22:40:1428:22:792:-37.5495,0,-85.8849	1/1:48:0,47:0:0:47:1684:-113.647,-14.1484,0	1/1:18:0,18:0:0:18:646:-43.4044,-5.41854,0	0/1:23:11,12:11:396:12:432:-23.8261,0,-22.104	0/1:39:17,22:17:604:22:792:-44.5471,0,-32.754	1/1:49:0,49:0:0:49:1743:-123.366,-14.7505,0	0/1:30:7,23:7:252:23:819:-45.5173,0,-9.02402	1/1:25:0,25:0:0:25:891:-63.5291,-7.52575,0	1/1:20:2,18:2:68:18:648:-41.0553,-0.614635,0	0/1:32:10,22:10:345:22:783:-44.1674,0,-16.0052	0/1:15:6,9:6:212:9:324:-19.3193,0,-11.3443	0/1:98:62,36:62:2182:36:1288:-57.454,0,-126.562	1/1:62:0,62:0:0:62:2211:-156.352,-18.6639,0	0/1:83:53,30:53:1804:30:1080:-50.0403,0,-102.609	0/1:79:34,45:34:1197:45:1604:-86.727,0,-61.7772	1/1:118:0,118:0:0:118:4176:-295.807,-35.5215,0	1/1:27:0,27:0:0:27:968:-68.7464,-8.12781,0	0/1:332:142,190:142:4886:190:6799:-365.893,0,-241.632	1/1:113:1,111:1:36:111:3962:-273.378,-30.4679,0	1/1:13:0,13:0:0:13:464:-33.1928,-3.91339,0	1/1:114:0,114:0:0:114:4064:-276.444,-34.3174,0	0/1:107:61,46:61:2138:46:1639:-84.0689,0,-121.064	1/1:115:0,115:0:0:115:4120:-280.745,-34.6185,0	0/1:11:4,7:4:136:7:252:-14.7436,0,-6.9466	1/1:16:0,16:0:0:16:561:-40.1947,-4.81648,0	1/1:5:0,5:0:0:5:180:-12.977,-1.50515,0	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:360:-25.6718,-3.0103,0	0/1:82:34,48:34:1190:48:1724:-91.5435,0,-57.9528	0/1:179:91,87:91:3187:87:3120:-165.485,0,-174.397	1/1:33:0,33:0:0:33:1180:-82.9243,-9.93399,0	.:.:.:.:.:.:.:.	0/1:113:73,40:73:2585:40:1428:-66.6271,0,-150.437	1/1:20:0,20:0:0:20:716:-49.8646,-6.0206,0	1/1:119:1,118:1:36:118:4224:-292.512,-32.2333,0	1/1:31:0,31:0:0:31:1116:-75.7648,-9.33193,0	1/1:22:0,22:0:0:22:779:-54.8704,-6.62266,0	0/1:149:77,72:77:2668:72:2580:-132.582,0,-143.064	0/1:97:52,45:52:1818:45:1601:-83.1424,0,-104.777	1/1:143:0,143:0:0:143:5116:-348.845,-43.0473,0	1/1:65:0,65:0:0:65:2318:-158.364,-19.567,0	0/1:87:47,40:47:1642:40:1424:-72.3695,0,-91.4932	1/1:131:2,129:2:57:129:4567:-306.453,-34.9151,0	0/1:8:2,6:2:68:6:212:-11.7018,0,-2.85935	1/1:80:1,79:1:36:79:2827:-193.613,-20.4892,0	1/1:39:0,39:0:0:39:1400:-94.8841,-11.7402,0	0/1:15:10,5:10:345:5:180:-8.46152,0,-21.1227	1/1:103:0,103:0:0:103:3700:-261.302,-31.0061,0	0/1:64:38,26:38:1304:26:925:-43.4714,0,-75.2677	1/1:7:0,7:0:0:7:252:-17.1801,-2.10721,0	1/1:26:0,26:0:0:26:936:-61.2085,-7.82678,0	1/1:48:0,48:0:0:48:1715:-121.076,-14.4494,0	0/1:79:28,51:28:985:51:1828:-102.118,0,-46.7072	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.82108	0/1:149:87,62:87:2995:62:2224:-105.685,0,-164.359	1/1:172:3,169:3:100:169:6044:-404.652,-44.0598,0	0/1:38:16,22:16:560:22:792:-44.7004,0,-29.1137	0/1:40:24,16:24:845:16:565:-27.0996,0,-48.3789	0/1:171:71,100:71:2494:100:3584:-191.726,0,-126.72	1/1:90:0,90:0:0:90:3190:-216.742,-27.0927,0	0/1:6:1,5:1:36:5:180:-11.1708,0,-1.0149	1/1:95:0,95:0:0:95:3399:-235.373,-28.5979,0	1/1:57:0,57:0:0:57:2017:-138.855,-17.1587,0	0/1:25:10,15:10:356:15:536:-29.6896,0,-17.5641	1/1:131:0,131:0:0:131:4672:-330.569,-39.4349,0	0/1:24:13,11:13:408:11:396:-21.0603,0,-23.9165	1/1:160:0,160:0:0:160:5642:-399.124,-48.1648,0	0/1:70:40,30:40:1436:30:1080:-52.7514,0,-80.3677	0/1:106:46,60:46:1560:60:2148:-119.432,0,-84.3108	0/1:67:43,24:43:1505:24:860:-39.942,0,-90.9612	0/1:11:6,5:6:201:5:180:-9.66564,0,-11.8712	0/1:65:32,33:32:1118:33:1169:-62.6807,0,-60.1438	1/1:66:0,66:0:0:66:2368:-166.958,-19.868,0	1/1:172:0,172:0:0:172:6152:-422.209,-51.7772,0	0/1:76:25,51:25:865:51:1836:-102.617,0,-39.7653	1/1:27:0,27:0:0:27:972:-66.9167,-8.12781,0	1/1:45:0,45:0:0:45:1597:-108.302,-13.5464,0	1/1:64:0,64:0:0:64:2280:-158.509,-19.2659,0	1/1:30:0,30:0:0:30:1076:-75.3459,-9.0309,0	0/1:31:9,22:9:320:22:792:-45.7805,0,-14.3659	0/1:31:11,20:11:392:20:720:-41.8036,0,-19.5911	0/1:9:2,7:2:72:7:248:-15.2567,0,-2.40153	0/1:31:9,22:9:320:22:788:-45.5584,0,-13.7123	0/1:22:8,14:8:280:14:500:-28.0531,0,-14.0697	1/1:90:0,90:0:0:90:3228:-221.582,-27.0927,0	1/1:44:0,44:0:0:44:1584:-108.205,-13.2453,0
chr11	26425968	.	T	C	110599	PASS	AB=0.509967;ABP=5.91055;AC=140;AF=0.744681;AN=188;AO=5291;CIGAR=1X;DP=6953;DPB=6953;DPRA=21.5714;EPP=11388.3;EPPR=3581.62;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.9813;MQMR=59.9934;NS=94;NUMALT=1;ODDS=3.43436;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187262;QR=59422;RO=1656;RPL=12;RPP=11388.3;RPPR=3572.96;RPR=5279;RUN=1;SAF=0;SAP=11492.3;SAR=5291;SRF=1;SRP=3590.29;SRR=1655;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:592:-53.6051,-5.11751,0	0/1:46:15,31:15:536:31:1104:-85.8233,0,-34.7274	1/1:121:0,121:0:0:121:4277:-385.112,-36.4246,0	0/1:166:98,67:98:3520:67:2392:-165.508,0,-266.979	0/1:46:29,17:29:1028:17:612:-41.5661,0,-78.9857	0/1:27:10,17:10:360:17:604:-46.5628,0,-24.6165	1/1:103:0,103:0:0:103:3643:-328.075,-31.0061,0	1/1:122:0,122:0:0:122:4359:-392.485,-36.7257,0	0/1:72:42,30:42:1508:30:1054:-73.495,0,-114.34	1/1:96:0,96:0:0:96:3436:-309.453,-28.8989,0	1/1:87:0,87:0:0:87:3017:-271.763,-26.1896,0	0/1:67:40,27:40:1432:27:937:-64.4721,0,-109.009	0/1:70:34,36:34:1224:36:1276:-94.071,0,-89.3949	1/1:96:0,96:0:0:96:3340:-300.818,-28.8989,0	0/1:63:35,28:35:1260:28:978:-69.3663,0,-94.7406	1/1:56:0,56:0:0:56:1959:-176.585,-16.8577,0	0/1:47:11,36:11:396:36:1220:-95.944,0,-21.8343	0/1:36:10,26:10:360:26:917:-72.0075,0,-21.9072	0/1:22:7,15:7:252:15:490:-37.788,0,-16.4063	0/1:97:44,53:44:1580:53:1896:-141.718,0,-113.292	1/1:130:0,130:0:0:130:4577:-412.095,-39.1339,0	0/1:76:55,21:55:1976:21:756:-45.4889,0,-155.236	0/1:98:57,41:57:2052:41:1460:-102.195,0,-155.45	1/1:98:0,98:0:0:98:3499:-315.121,-29.5009,0	1/1:46:0,46:0:0:46:1629:-146.879,-13.8474,0	0/1:214:82,131:82:2944:131:4642:-353.464,0,-200.714	1/1:119:0,119:0:0:119:4247:-382.41,-35.8226,0	1/1:34:0,34:0:0:34:1202:-108.484,-10.235,0	1/1:104:0,104:0:0:104:3701:-333.292,-31.3071,0	0/1:82:32,50:32:1143:50:1788:-136.518,0,-78.4942	1/1:84:0,84:0:0:84:2953:-266.003,-25.2865,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:175:99,76:99:3551:76:2698:-190.384,0,-267.117	0/1:142:41,101:41:1468:101:3558:-277.681,0,-89.6698	1/1:62:0,62:0:0:62:2196:-197.906,-18.6639,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:86:51,35:51:1828:35:1237:-85.7437,0,-138.912	1/1:25:1,24:1:36:24:852:-73.4021,-3.92748,0	1/1:100:0,100:0:0:100:3557:-320.338,-30.103,0	1/1:53:0,53:0:0:53:1875:-169.028,-15.9546,0	1/1:51:0,51:0:0:51:1811:-163.271,-15.3525,0	0/1:57:30,27:30:1076:27:964:-69.9181,0,-79.9941	0/1:69:48,21:48:1716:21:745:-46.6024,0,-133.955	1/1:138:1,137:1:36:137:4851:-433.148,-37.9439,0	1/1:90:0,90:0:0:90:3196:-287.863,-27.0927,0	0/1:75:28,47:28:1008:47:1664:-127.467,0,-68.4591	1/1:126:0,126:0:0:126:4503:-405.439,-37.9298,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:90:0,90:0:0:90:3187:-287.053,-27.0927,0	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	0/1:21:7,14:7:252:14:480:-37.2022,0,-16.7073	1/1:85:0,85:0:0:85:2995:-269.782,-25.5876,0	0/1:56:46,10:46:1656:10:360:-15.8866,0,-132.471	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:58:1,57:1:36:57:2021:-178.457,-13.8615,0	0/1:94:48,45:48:1724:45:1572:-113.412,0,-127.09	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:154:76,78:76:2724:78:2778:-203.902,0,-199.044	1/1:185:1,183:1:36:183:6497:-581.219,-52.1511,0	0/1:69:16,52:16:576:52:1848:-145.768,0,-31.3451	0/1:51:23,28:23:824:28:1000:-74.9344,0,-59.1308	0/1:135:68,67:68:2444:67:2392:-174.898,0,-179.576	1/1:81:0,81:0:0:81:2882:-259.618,-24.3834,0	0/1:29:7,22:7:252:22:776:-61.4323,0,-14.2991	1/1:58:0,58:0:0:58:2059:-185.581,-17.4597,0	1/1:74:0,74:0:0:74:2634:-237.307,-22.2762,0	0/1:29:13,16:13:464:16:572:-43.0836,0,-33.3676	1/1:72:0,72:0:0:72:2545:-228.363,-21.6742,0	0/1:73:35,38:35:1256:38:1343:-99.1942,0,-91.3701	1/1:220:0,220:0:0:220:7783:-700.509,-66.2266,0	0/1:110:48,62:48:1716:62:2214:-166.412,0,-121.612	0/1:88:61,27:61:2192:27:952:-59.5035,0,-171.055	0/1:85:35,50:35:1260:50:1760:-133.094,0,-88.1179	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	0/1:62:22,40:22:792:40:1428:-110.154,0,-52.9418	1/1:31:0,31:0:0:31:1073:-96.8759,-9.33193,0	1/1:133:0,132:0:0:132:4668:-419.923,-39.736,0	0/1:72:31,41:31:1104:41:1464:-110.382,0,-77.9965	1/1:68:0,68:0:0:68:2410:-217.156,-20.47,0	1/1:61:0,61:0:0:61:2167:-195.296,-18.3628,0	1/1:125:1,124:1:32:124:4362:-389.559,-34.4294,0	1/1:26:0,26:0:0:26:902:-81.4915,-7.82678,0	0/1:86:51,35:51:1824:35:1235:-85.5649,0,-138.545	0/1:74:39,35:39:1400:35:1240:-89.6282,0,-104.023	0/1:47:20,27:20:720:27:923:-69.2288,0,-50.9804	0/1:98:41,57:41:1476:57:1988:-149.691,0,-103.635	0/1:72:50,22:50:1800:22:783:-49.1188,0,-140.608	1/1:76:0,76:0:0:76:2703:-243.514,-22.8783,0	1/1:78:1,77:1:36:77:2683:-238.115,-19.8821,0
chr11	26425986	.	A	C	113819	PASS	AB=0.515897;ABP=10.3284;AC=140;AF=0.744681;AN=188;AO=5365;CIGAR=1X;DP=6990;DPB=6990;DPRA=21.6863;EPP=11488.5;EPPR=3488.36;GTI=1;LEN=1;MEANALT=1;MQM=59.986;MQMR=60;NS=94;NUMALT=1;ODDS=3.14697;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191039;QR=58129;RO=1625;RPL=5346;RPP=11488.5;RPPR=3488.36;RPR=19;RUN=1;SAF=0;SAP=11653;SAR=5365;SRF=0;SRP=3531.65;SRR=1625;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:596:-53.9664,-5.11751,0	0/1:46:14,32:14:500:32:1148:-89.7825,0,-31.4888	1/1:119:0,119:0:0:119:4231:-380.972,-35.8226,0	0/1:163:97,66:97:3466:66:2360:-163.591,0,-263.083	0/1:44:28,16:28:1008:16:572:-38.5681,0,-77.791	0/1:27:10,17:10:360:17:612:-47.2856,0,-24.6165	1/1:105:1,104:1:36:104:3699:-329.516,-28.0099,0	1/1:125:0,125:0:0:125:4457:-401.3,-37.6288,0	0/1:72:42,30:42:1504:30:1068:-74.7579,0,-113.98	1/1:89:0,89:0:0:89:3162:-284.805,-26.7917,0	1/1:88:0,88:0:0:88:3135:-282.376,-26.4906,0	0/1:67:39,28:39:1382:28:987:-68.974,0,-104.508	0/1:69:32,37:32:1144:37:1320:-98.3309,0,-82.4984	1/1:97:0,97:0:0:97:3440:-309.814,-29.1999,0	0/1:64:35,29:35:1260:29:1026:-73.386,0,-94.4396	1/1:56:0,56:0:0:56:1983:-178.743,-16.8577,0	0/1:46:12,34:12:432:34:1199:-94.3674,0,-25.3738	0/1:35:11,24:11:388:24:864:-67.5465,0,-24.7213	0/1:21:7,14:7:252:14:500:-39.0145,0,-16.7073	0/1:99:43,56:43:1539:56:2004:-150.832,0,-109	1/1:133:0,133:0:0:133:4719:-424.874,-40.037,0	0/1:78:56,22:56:1999:22:788:-47.7645,0,-156.703	0/1:97:56,41:56:1980:41:1464:-102.856,0,-149.272	1/1:100:0,100:0:0:100:3575:-321.957,-30.103,0	1/1:48:0,48:0:0:48:1707:-153.915,-14.4494,0	0/1:209:77,132:77:2756:132:4702:-360.425,0,-185.367	1/1:123:0,123:0:0:123:4382:-394.554,-37.0267,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:101:0,101:0:0:101:3599:-324.117,-30.404,0	0/1:83:31,52:31:1112:52:1860:-142.694,0,-75.4059	1/1:84:0,84:0:0:84:2987:-269.063,-25.2865,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:172:96,76:96:3448:76:2732:-194.345,0,-258.755	0/1:141:40,101:40:1436:101:3606:-282.302,0,-87.0924	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:88:51,37:51:1819:37:1320:-92.6113,0,-137.5	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:99:0,99:0:0:99:3523:-317.276,-29.802,0	1/1:53:0,53:0:0:53:1888:-170.198,-15.9546,0	1/1:54:0,54:0:0:54:1930:-173.976,-16.2556,0	0/1:57:31,26:31:1112:26:928:-66.6795,0,-83.2326	0/1:66:43,23:43:1544:23:818:-54.0739,0,-119.385	1/1:144:0,144:0:0:144:5110:-460.047,-43.3483,0	1/1:90:0,90:0:0:90:3234:-291.278,-27.0927,0	0/1:74:27,47:27:972:47:1671:-128.4,0,-65.5217	1/1:128:0,128:0:0:128:4564:-410.924,-38.5318,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:91:0,91:0:0:91:3247:-292.451,-27.3937,0	1/1:47:0,47:0:0:47:1667:-150.317,-14.1484,0	0/1:20:7,13:7:248:13:464:-36.0769,0,-16.6436	1/1:89:0,89:0:0:89:3157:-284.357,-26.7917,0	0/1:53:44,9:44:1584:9:320:-13.1878,0,-126.897	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:20:0,20:0:0:20:704:-63.6845,-6.0206,0	1/1:63:0,63:0:0:63:2244:-202.092,-18.9649,0	0/1:94:48,46:48:1720:46:1631:-118.781,0,-126.789	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:155:73,82:73:2611:82:2890:-213.675,0,-188.578	1/1:189:1,188:1:36:188:6698:-599.301,-53.2964,0	0/1:67:17,50:17:597:50:1784:-140.674,0,-33.8871	0/1:47:22,25:22:788:25:883:-65.639,0,-57.0964	0/1:137:67,70:67:2391:70:2496:-183.652,0,-174.206	1/1:82:0,82:0:0:82:2932:-264.115,-24.6845,0	0/1:30:7,23:7:248:23:820:-65.0916,0,-13.6333	1/1:58:0,58:0:0:58:2056:-185.309,-17.4597,0	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	0/1:27:12,15:12:432:15:536:-40.447,0,-31.0934	1/1:75:0,75:0:0:75:2645:-238.138,-22.5773,0	0/1:74:37,37:37:1332:37:1307:-95.6545,0,-97.9062	1/1:230:0,230:0:0:230:8181:-736.307,-69.2369,0	0/1:108:49,59:49:1760:59:2112:-157.838,0,-126.173	0/1:85:58,27:58:2075:27:968:-61.8498,0,-161.432	0/1:87:33,54:33:1184:54:1911:-146.077,0,-80.6787	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:65:23,42:23:824:42:1495:-115.277,0,-54.9164	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:134:1,133:1:32:133:4741:-423.649,-37.1387,0	0/1:71:32,39:32:1130:39:1380:-103.126,0,-80.6338	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:127:1,126:1:36:126:4476:-399.412,-34.6325,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:83:49,34:49:1748:34:1220:-85.1213,0,-132.619	0/1:72:37,35:37:1324:35:1256:-91.6711,0,-97.7879	0/1:46:20,26:20:716:26:916:-68.9091,0,-50.9203	0/1:98:40,58:40:1436:58:2047:-155.001,0,-100.037	0/1:76:53,23:53:1888:23:824:-51.605,0,-147.32	1/1:84:0,84:0:0:84:2959:-266.544,-25.2865,0	1/1:76:0,76:0:0:76:2689:-242.253,-22.8783,0
chr11	26500929	.	T	C	132139	PASS	AB=0.455072;ABP=84.7658;AC=142;AF=0.755319;AN=188;AO=6305;CIGAR=1X;DP=8854;DPB=8854;DPRA=0;EPP=13546.9;EPPR=5468.77;GTI=3;LEN=1;MEANALT=1.04255;MQM=59.5645;MQMR=59.9792;NS=94;NUMALT=1;ODDS=1.78633;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=225465;QR=90781;RO=2545;RPL=6288;RPP=13546.9;RPPR=5468.77;RPR=17;RUN=1;SAF=0;SAP=13694.1;SAR=6305;SRF=0;SRP=5529.41;SRR=2545;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:85:0,85:0:0:85:3024:-271.562,-25.5876,0	0/1:85:44,41:44:1576:41:1464:-106.447,0,-116.544	1/1:160:0,160:0:0:160:5698:-512.658,-48.1648,0	0/1:208:130,78:130:4641:78:2800:-189.618,0,-355.238	0/1:66:39,27:39:1350:27:972:-67.9192,0,-101.923	0/1:42:26,16:26:928:16:563:-38.3559,0,-71.195	1/1:74:0,74:0:0:74:2655:-239.182,-22.2762,0	1/1:132:0,132:0:0:132:4703:-423.062,-39.736,0	0/1:119:48,71:48:1701:71:2548:-193.697,0,-117.551	1/1:74:0,74:0:0:74:2660:-239.641,-22.2762,0	1/1:46:0,46:0:0:46:1648:-148.502,-13.8474,0	0/1:103:44,59:44:1584:59:2112:-159.31,0,-111.845	0/1:80:42,37:42:1512:37:1328:-95.6566,0,-112.233	1/1:56:1,55:1:36:55:1963:-173.335,-13.2594,0	0/1:70:41,29:41:1449:29:1040:-72.8343,0,-109.629	1/1:54:0,54:0:0:54:1936:-174.507,-16.2556,0	0/1:38:24,14:24:860:14:504:-34.259,0,-66.2827	0/1:35:21,14:21:752:14:500:-34.8001,0,-57.4702	1/1:27:0,27:0:0:27:972:-87.797,-8.12781,0	0/1:213:115,98:115:4090:98:3516:-252.441,0,-304.165	1/1:144:0,144:0:0:144:5153:-463.754,-43.3483,0	0/1:178:113,65:113:4044:65:2336:-156.9,0,-310.565	0/1:147:72,75:72:2580:75:2684:-197.46,0,-188.198	1/1:106:0,106:0:0:106:3798:-341.585,-31.9092,0	1/1:83:2,81:2:72:81:2882:-252.71,-18.1488,0	0/1:283:168,115:168:5930:115:4097:-283.667,0,-448.616	1/1:143:0,143:0:0:143:5117:-460.323,-43.0473,0	1/1:23:0,23:0:0:23:822:-74.3015,-6.92369,0	1/1:300:0,300:0:0:300:10764:-968.375,-90.309,0	0/1:156:85,71:85:3044:71:2539:-181.786,0,-227.224	1/1:124:0,124:0:0:124:4407:-396.742,-37.3277,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:8:0,8:0:0:8:288:-26.2592,-2.40824,0	0/1:186:85,100:85:3052:100:3581:-266.429,0,-218.858	0/1:198:95,103:95:3373:103:3692:-272.858,0,-244.182	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:174:111,63:111:3942:63:2245:-149.908,0,-302.592	1/1:27:0,27:0:0:27:972:-87.7933,-8.12781,0	1/1:198:0,198:0:0:198:7051:-634.446,-59.6039,0	1/1:48:0,48:0:0:48:1706:-153.824,-14.4494,0	1/1:46:0,46:0:0:46:1652:-148.961,-13.8474,0	0/1:106:59,47:59:2120:47:1692:-120.654,0,-159.159	0/1:78:44,34:44:1572:34:1220:-86.6101,0,-118.291	1/1:173:2,171:2:72:171:6112:-543.236,-45.2415,0	1/1:73:0,73:0:0:73:2589:-233.245,-21.9752,0	0/1:110:62,48:62:2213:48:1709:-120.95,0,-166.317	1/1:85:0,85:0:0:85:3041:-273.869,-25.5876,0	0/1:7:2,5:2:72:5:180:-14.4425,0,-4.72951	1/1:103:0,103:0:0:103:3698:-332.958,-31.0061,0	1/1:77:0,77:0:0:77:2752:-247.899,-23.1793,0	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	1/1:137:0,136:0:0:136:4851:-436.323,-40.9401,0	0/1:48:27,21:27:960:21:748:-53.1888,0,-72.2645	1/1:12:0,12:0:0:12:428:-38.8521,-3.61236,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:83:36,47:36:1284:47:1692:-127.581,0,-90.8733	0/1:86:47,39:47:1688:39:1400:-100.411,0,-126.318	0/1:7:4,3:4:125:3:108:-7.96796,0,-9.45141	0/1:172:102,70:102:3641:70:2490:-172.538,0,-276.117	1/1:144:1,142:1:36:142:5085:-454.186,-39.8088,0	0/1:74:41,33:41:1476:33:1180:-84.23,0,-110.86	0/1:102:62,40:62:2194:40:1432:-98.4655,0,-167.017	0/1:242:127,115:127:4556:115:4107:-296.961,0,-337.356	1/1:147:0,147:0:0:147:5243:-471.998,-44.2514,0	0/1:25:13,12:13:468:12:432:-31.6954,0,-34.9339	1/1:58:0,58:0:0:58:2076:-187.091,-17.4597,0	1/1:35:0,35:0:0:35:1260:-113.702,-10.5361,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:133:0,133:0:0:133:4751:-427.494,-40.037,0	0/1:90:45,45:45:1604:45:1616:-117.988,0,-117.557	1/1:171:0,171:0:0:171:6091:-548.139,-51.4761,0	0/1:233:134,99:134:4788:99:3550:-249.508,0,-360.932	0/1:167:83,84:83:2976:84:2988:-218.804,0,-217.755	0/1:74:44,30:44:1557:30:1067:-74.065,0,-118.143	0/1:9:6,3:6:216:3:104:-6.98509,0,-17.0812	0/1:119:67,52:67:2389:52:1864:-132.217,0,-179.443	1/1:151:0,151:0:0:151:5387:-484.809,-45.4555,0	1/1:233:0,233:0:0:233:8313:-748.125,-70.14,0	0/1:65:34,31:34:1209:31:1116:-81.1847,0,-89.5472	1/1:63:0,63:0:0:63:2251:-202.839,-18.9649,0	1/1:60:0,60:0:0:60:2159:-194.202,-18.0618,0	1/1:134:0,134:0:0:134:4787:-430.924,-40.338,0	1/1:15:0,15:0:0:15:534:-48.3752,-4.51545,0	0/1:71:33,38:33:1184:38:1368:-102.04,0,-85.4952	0/1:66:38,28:38:1353:28:1004:-70.7748,0,-102.2	0/1:45:21,24:21:756:24:864:-64.5362,0,-54.8209	0/1:111:52,59:52:1856:59:2124:-157.987,0,-133.905	0/1:74:40,34:40:1432:34:1215:-87.3772,0,-106.901	1/1:84:0,84:0:0:84:3024:-272.278,-25.2865,0	1/1:91:0,91:0:0:91:3251:-292.785,-27.3937,0
chr11	26619181	.	C	G	181812	PASS	AB=0.581122;ABP=246.456;AC=142;AF=0.755319;AN=188;AO=8498;CIGAR=1X;DP=10289;DPB=10289;DPRA=0;EPP=18456.2;EPPR=3870.4;GTI=2;LEN=1;MEANALT=1.10638;MQM=58.3586;MQMR=59.927;NS=94;NUMALT=1;ODDS=0.974743;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=303166;QR=63632;RO=1781;RPL=8498;RPP=18456.2;RPPR=3870.4;RPR=0;RUN=1;SAF=0;SAP=18456.2;SAR=8498;SRF=0;SRP=3870.4;SRR=1781;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:720:-64.9725,-6.0206,0	0/1:22:14,8:14:504:8:288:-19.6374,0,-39.0754	0/1:64:32,31:32:1144:31:1112:-80.9716,0,-83.9441	0/1:90:39,50:39:1384:50:1788:-134.022,0,-97.7008	0/1:26:12,14:12:432:14:500:-37.5048,0,-31.3944	0/1:27:6,21:6:216:21:756:-60.0736,0,-11.6627	1/1:46:0,46:0:0:46:1625:-146.461,-13.8474,0	1/1:76:0,76:0:0:76:2690:-241.654,-22.8783,0	0/1:61:37,24:37:1320:24:851:-58.4523,0,-100.738	1/1:39:0,39:0:0:39:1392:-125.576,-11.7402,0	1/1:159:0,159:0:0:159:5641:-507.723,-47.8638,0	0/1:40:15,25:15:540:25:874:-66.9045,0,-36.8944	0/1:28:17,11:17:608:11:396:-27.5387,0,-46.6232	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:25:12,13:12:423:13:460:-34.2092,0,-30.8793	1/1:29:0,29:0:0:29:1014:-91.5349,-8.72987,0	0/1:21:12,9:12:424:9:311:-21.9925,0,-32.1748	0/1:15:4,11:4:135:11:396:-31.3879,0,-7.96706	1/1:51:0,50:0:0:50:1776:-159.605,-15.0515,0	0/1:54:17,37:17:608:37:1324:-103.178,0,-38.7964	1/1:56:0,56:0:0:56:1977:-178.099,-16.8577,0	0/1:76:30,46:30:1053:46:1644:-125.356,0,-72.2003	0/1:81:25,56:25:866:56:1996:-155.445,0,-53.8679	1/1:19:0,19:0:0:19:680:-61.5058,-5.71957,0	1/1:41:0,41:0:0:41:1472:-132.721,-12.3422,0	0/1:138:70,68:70:2516:68:2424:-176.559,0,-185.149	1/1:97:0,97:0:0:97:3449:-309.796,-29.1999,0	1/1:8:0,8:0:0:8:288:-26.2658,-2.40824,0	1/1:167:0,167:0:0:167:5967:-536.478,-50.272,0	0/1:100:38,62:38:1352:62:2204:-168.294,0,-91.8774	1/1:63:0,63:0:0:63:2244:-202.155,-18.9649,0	0/1:382:146,235:146:5213:235:8404:-639.725,0,-354.211	1/1:382:1,381:1:36:381:13606:-1219.97,-111.395,0	1/1:569:1,568:1:36:568:20272:-1817.13,-167.688,0	1/1:1176:0,1175:0:0:1175:41959:-3769.09,-353.71,0	1/1:490:0,489:0:0:489:17445:-1566.61,-147.204,0	0/1:89:42,47:42:1504:47:1658:-122.695,0,-108.863	0/1:67:38,29:38:1345:29:1032:-72.9145,0,-101.179	1/1:81:0,81:0:0:81:2878:-258.416,-24.3834,0	1/1:303:0,302:0:0:302:10781:-968.467,-90.9111,0	0/1:55:24,31:24:856:31:1116:-84.1477,0,-60.8045	1/1:61:0,61:0:0:61:2180:-196.056,-18.3628,0	1/1:85:0,85:0:0:85:3024:-271.825,-25.5876,0	1/1:11:0,11:0:0:11:384:-34.8947,-3.31133,0	1/1:13:0,13:0:0:13:468:-42.4311,-3.91339,0	0/1:43:11,32:11:392:32:1136:-89.6046,0,-22.6758	0/1:52:13,38:13:460:38:1360:-106.817,0,-26.0226	1/1:85:0,85:0:0:85:3044:-273.661,-25.5876,0	1/1:49:0,49:0:0:49:1744:-157.215,-14.7505,0	0/1:44:25,19:25:900:19:684:-48.6027,0,-68.0757	1/1:44:0,44:0:0:44:1576:-142.104,-13.2453,0	0/1:331:163,168:163:5832:168:6004:-440.623,0,-425.324	1/1:69:0,69:0:0:69:2468:-222.078,-20.7711,0	1/1:51:0,51:0:0:51:1801:-162.356,-15.3525,0	0/1:238:82,155:82:2933:155:5523:-425.078,0,-192.494	1/1:65:0,65:0:0:65:2320:-208.832,-19.567,0	0/1:30:12,18:12:428:18:640:-48.8445,0,-29.8279	1/1:464:0,464:0:0:464:16573:-1490.95,-139.678,0	1/1:280:0,280:0:0:280:10012:-900.443,-84.2884,0	0/1:34:8,26:8:284:26:916:-72.4219,0,-15.6683	0/1:31:10,21:10:356:21:756:-58.5684,0,-23.0493	0/1:203:90,113:90:3232:113:4032:-301.441,0,-229.992	0/1:32:10,22:10:356:22:788:-61.6118,0,-22.7483	1/1:102:0,102:0:0:102:3648:-328.373,-30.7051,0	0/1:30:10,20:10:356:20:716:-55.7359,0,-23.3503	0/1:50:18,32:18:648:32:1140:-87.8577,0,-43.6004	1/1:112:0,111:0:0:111:3980:-357.841,-33.4143,0	1/1:89:0,89:0:0:89:3188:-287.002,-26.7917,0	0/1:127:80,47:80:2849:47:1673:-112.419,0,-218.416	1/1:27:0,27:0:0:27:964:-86.6818,-8.12781,0	1/1:16:0,16:0:0:16:563:-50.9992,-4.81648,0	0/1:342:120,222:120:4296:222:7912:-608.769,0,-283.865	1/1:92:0,92:0:0:92:3259:-292.779,-27.6948,0	0/1:28:11,17:11:392:17:596:-45.5256,0,-27.1903	1/1:126:0,126:0:0:126:4519:-406.299,-37.9298,0	0/1:72:31,41:31:1108:41:1464:-110.325,0,-78.3487	0/1:48:21,27:21:752:27:956:-71.7091,0,-53.5475	0/1:34:15,19:15:536:19:684:-51.4397,0,-38.3389	0/1:502:149,353:149:5348:353:12575:-978.523,0,-330.225	0/1:35:16,19:16:572:19:680:-50.9869,0,-41.2774	1/1:67:0,67:0:0:67:2404:-216.389,-20.169,0	1/1:105:0,105:0:0:105:3760:-338.243,-31.6082,0	0/1:18:12,6:12:432:6:208:-13.6405,0,-33.8027	1/1:26:0,26:0:0:26:928:-83.7676,-7.82678,0	1/1:18:0,18:0:0:18:640:-57.9008,-5.41854,0	1/1:32:0,32:0:0:32:1139:-102.79,-9.63296,0	1/1:6:0,6:0:0:6:212:-19.4124,-1.80618,0	0/1:20:12,8:12:424:8:288:-20.2343,0,-32.4735	0/1:22:11,11:11:396:11:396:-29.2114,0,-29.3601	0/1:94:59,35:59:2116:35:1252:-84.6651,0,-162.412	0/1:310:143,167:143:5124:167:5957:-442.664,0,-367.937	0/1:28:17,11:17:595:11:388:-26.8285,0,-45.4478	1/1:10:0,10:0:0:10:356:-32.3696,-3.0103,0	1/1:32:0,32:0:0:32:1122:-101.206,-9.63296,0
chr11	26620107	.	T	G	17123.3	PASS	AB=0.590565;ABP=125.332;AC=45;AF=0.241935;AN=186;AO=1020;CIGAR=1X;DP=3262;DPB=3262;DPRA=1.29451;EPP=2217.91;EPPR=4867.11;GTI=1;LEN=1;MEANALT=1.04082;MQM=60;MQMR=59.9518;NS=93;NUMALT=1;ODDS=1.59239;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35938;QR=79558;RO=2240;RPL=0;RPP=2217.91;RPPR=4867.11;RPR=1020;RUN=1;SAF=0;SAP=2217.91;SAR=1020;SRF=0;SRP=4867.11;SRR=2240;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:35:15,20:15:540:20:705:-53.2367,0,-38.4005	0/1:71:28,43:28:1000:43:1516:-115.357,0,-68.9422	0/1:51:10,41:10:356:41:1446:-115.082,0,-17.0287	0/1:26:16,9:16:576:9:316:-20.8942,0,-44.2871	0/1:14:5,9:5:180:9:292:-22.3807,0,-12.3376	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6899	0/1:37:14,23:14:504:23:800:-61.1776,0,-34.56	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:65:33,32:33:1164:32:1114:-80.9987,0,-85.5	0/1:41:16,25:16:576:25:868:-66.0907,0,-39.8246	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7641	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:17:10,7:10:356:7:244:-17.1819,0,-27.2637	0/1:20:9,11:9:316:11:387:-29.1453,0,-22.7527	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:65:23,41:23:816:41:1456:-111.71,0,-54.1362	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/1:58:11,47:11:381:47:1657:-131.956,0,-17.1609	0/1:40:20,20:20:703:20:716:-52.7265,0,-51.5523	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6397	0/1:72:36,36:36:1284:36:1280:-93.8291,0,-94.1883	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.214	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/0:49:49,0:49:1737:0:0:0,-14.7505,-156.613	0/1:36:17,19:17:604:19:684:-51.0532,0,-43.8535	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:10:6,4:6:212:4:140:-9.93428,0,-16.4145	0/0:27:27,0:27:952:0:0:0,-8.12781,-85.9952	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:106:41,65:41:1454:65:2286:-174.093,0,-99.2004	0/1:59:16,43:16:564:43:1539:-121.042,0,-33.3295	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	.:.:.:.:.:.:.:.	0/1:50:19,31:19:680:31:1085:-82.9055,0,-46.4777	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:67:66,1:66:2356:1:36:0,-16.5707,-208.701	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/1:36:14,22:14:500:22:783:-59.9559,0,-34.4991	0/1:46:15,31:15:540:31:1101:-85.551,0,-35.0892	0/0:44:42,2:42:1488:2:68:0,-6.78761,-127.754	0/0:45:45,0:45:1570:0:0:0,-13.5463,-141.584	0/1:30:18,12:18:648:12:428:-29.8279,0,-49.621	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:24:24,0:24:843:0:0:0,-7.22472,-76.188	0/1:30:13,17:13:449:17:599:-45.2072,0,-31.7066	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:31:17,14:17:596:14:483:-34.4654,0,-44.6359	0/1:58:20,38:20:712:38:1321:-101.727,0,-46.9469	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:63:26,37:26:920:37:1301:-98.4247,0,-64.1522	0/0:56:55,1:55:1944:1:36:0,-13.2594,-171.638	0/1:19:13,6:13:451:6:212:-13.7052,0,-35.2002	0/1:41:7,34:7:248:34:1224:-98.1248,0,-10.322	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:42:40,2:40:1416:2:72:0,-5.80654,-120.898	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:79:79,0:79:2821:0:0:0,-23.7814,-254.128	0/1:41:16,25:16:572:25:887:-67.8059,0,-39.463	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:55:22,33:22:788:33:1156:-87.787,0,-54.5301	0/1:42:19,23:19:684:23:820:-61.4793,0,-49.2471	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:11:3,8:3:108:8:266:-20.9518,0,-6.76384	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:60:60,0:60:2109:0:0:0,-18.0618,-190.078	0/1:38:16,22:16:564:22:780:-59.0839,0,-39.6512	0/0:41:41,0:41:1435:0:0:0,-12.3422,-129.445	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:71:71,0:71:2535:0:0:0,-21.3731,-228.398	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:42:13,29:13:451:29:986:-76.4009,0,-28.2755	0/1:40:13,27:13:448:27:942:-73.0511,0,-28.6078	0/1:27:17,10:17:585:10:352:-23.8904,0,-44.8438	0/1:66:34,32:34:1220:32:1144:-83.4015,0,-90.2388	0/1:40:15,25:15:532:25:870:-66.5743,0,-36.1719	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:75:75,0:75:2608:0:0:0,-22.5772,-234.967
chr11	26620140	.	GT	AG,GG	69938	PASS	AB=0.417291,0.578674;ABP=106.101,96.2885;AC=141,45;AF=0.758065,0.241935;AN=186;AO=2310,1009;CIGAR=2X,1M1X;DP=3332;DPB=3332;DPRA=0,1.21384;EPP=5001.75,2176.69;EPPR=11.6962;GTI=1;LEN=2,1;MEANALT=1.6129,2.08333;MQM=59.9286,60;MQMR=60;NS=93;NUMALT=2;ODDS=0.874378;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=81455,35886;QR=100;RO=4;RPL=2308,1007;RPP=5001.75,2176.69;RPPR=11.6962;RPR=2,2;RUN=1,1;SAF=0,0;SAP=5019.11,2194.03;SAR=2310,1009;SRF=0;SRP=11.6962;SRR=4;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22,0:0:0:22,0:790,0:-71.4253,-6.62266,0,-71.4253,-6.62266,-71.4253	1/2:34:0,15,19:0:0:15,19:519,676:-97.6187,-55.4484,-50.933,-42.5204,0,-36.8009	1/2:71:0,29,42:0:0:29,42:1040,1500:-207.478,-122.651,-113.921,-85.1847,0,-72.5414	1/2:52:0,11,41:0:0:11,41:383,1459:-150.404,-119.263,-115.952,-31.4911,0,-19.1489	1/2:28:0,18,10:0:0:18,10:591,360:-77.4646,-29.734,-24.3155,-48.0791,0,-45.0688	1/2:14:0,5,9:0:0:5,9:180,307:-39.9448,-25.251,-23.7458,-15.0469,0,-12.3376	1/1:24:0,24,0:0:0:24,0:846,0:-76.4581,-7.22472,0,-76.4581,-7.22472,-76.4581	1/1:16:0,16,0:0:0:16,0:576,0:-52.1668,-4.81648,0,-52.1668,-4.81648,-52.1668	1/2:38:0,17,21:0:0:17,21:599,752:-110.451,-61.6846,-56.5671,-49.1208,0,-42.7992	1/1:23:0,23,0:0:0:23,0:812,0:-73.3997,-6.92369,0,-73.3997,-6.92369,-73.3997	1/1:23:0,23,0:0:0:23,0:826,0:-74.6638,-6.92369,0,-74.6638,-6.92369,-74.6638	1/2:66:0,34,32:0:0:34,32:1204,1113:-188.92,-90.8416,-80.6066,-98.4294,0,-88.7964	1/2:42:0,17,25:0:0:17,25:597,883:-120.836,-72.2617,-67.1442,-48.9257,0,-41.4	1/1:25:0,25,0:0:0:25,0:894,0:-80.7803,-7.52575,0,-80.7803,-7.52575,-80.7803	1/2:34:0,16,18:0:0:16,18:547,648:-97.6166,-53.2333,-48.4169,-44.7335,0,-39.3149	1/1:37:0,37,0:0:0:37,0:1313,0:-118.471,-11.1381,0,-118.471,-11.1381,-118.471	1/2:17:0,10,7:0:0:10,7:358,248:-49.7539,-20.557,-17.5467,-29.5526,0,-27.4454	1/2:20:0,8,11:0:0:8,11:286,396:-55.7634,-32.4398,-30.0316,-23.442,0,-20.1307	1/1:13:0,13,0:0:0:13,0:455,0:-41.2817,-3.91339,0,-41.2817,-3.91339,-41.2817	1/2:65:0,24,41:0:0:24,41:851,1468:-189.403,-120.074,-112.849,-69.6844,0,-57.3422	1/1:57:0,56,0:0:0:56,0:1940,0:-174.483,-16.8577,0,-174.483,-16.8577,-174.483	1/2:57:0,11,46:0:0:11,46:385,1636:-165.003,-133.681,-130.37,-31.6729,0,-17.8255	1/2:39:0,20,19:0:0:20,19:718,672:-113.659,-55.0873,-49.0667,-58.9278,0,-53.2082	1/1:19:0,19,0:0:0:19,0:654,0:-59.1797,-5.71957,0,-59.1797,-5.71957,-59.1797	1/1:27:0,27,0:0:0:27,0:951,0:-85.9037,-8.12781,0,-85.9037,-8.12781,-85.9037	1/2:75:0,38,37:0:0:38,37:1347,1320:-217.699,-107.964,-96.5247,-110.09,0,-98.9521	1/1:95:0,95,0:0:0:95,0:3346,0:-301.352,-28.5979,0,-301.352,-28.5979,-301.352	1/1:21:0,21,0:0:0:21,0:743,0:-67.193,-6.32163,0,-67.193,-6.32163,-67.193	1/1:51:0,51,0:0:0:51,0:1800,0:-162.28,-15.3525,0,-162.28,-15.3525,-162.28	1/2:38:0,18,20:0:0:18,20:633,716:-110.27,-58.7471,-53.3286,-51.8776,0,-45.857	1/1:31:0,31,0:0:0:31,0:1070,0:-96.6026,-9.33193,0,-96.6026,-9.33193,-96.6026	1/2:10:0,6,4:0:0:6,4:214,144:-29.5526,-12.1095,-10.3033,-17.8016,0,-16.5975	1/1:27:0,27,0:0:0:27,0:968,0:-87.4376,-8.12781,0,-87.4376,-8.12781,-87.4376	1/1:14:0,14,0:0:0:14,0:502,0:-45.5172,-4.21442,0,-45.5172,-4.21442,-45.5172	1/1:11:0,11,0:0:0:11,0:394,0:-35.8015,-3.31133,0,-35.8015,-3.31133,-35.8015	1/1:9:0,9,0:0:0:9,0:311,0:-28.3229,-2.70927,0,-28.3229,-2.70927,-28.3229	1/2:108:0,43,65:0:0:43,65:1530,2324:-314.538,-189.853,-176.909,-125.041,0,-105.474	1/2:59:0,16,43:0:0:16,43:574,1544:-173.128,-126.309,-121.492,-47.1778,0,-34.2335	1/1:36:0,36,0:0:0:36,0:1281,0:-115.592,-10.8371,0,-115.592,-10.8371,-115.592	.:.:.:.:.:.:.:.	1/2:49:0,19,30:0:0:19,30:660,1051:-139.522,-85.8687,-80.1492,-54.0016,0,-44.9707	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:70:0,70,0:0:0:70,0:2485,0:-223.901,-21.0721,0,-223.901,-21.0721,-223.901	1/1:32:0,32,0:0:0:32,0:1131,0:-102.098,-9.63296,0,-102.098,-9.63296,-102.098	1/1:35:0,35,0:0:0:35,0:1229,0:-110.914,-10.5361,0,-110.914,-10.5361,-110.914	1/2:39:0,15,24:0:0:15,24:534,820:-110.415,-66.8868,-62.3714,-43.8788,0,-36.6541	1/2:46:0,15,31:0:0:15,31:528,1104:-133.321,-90.3387,-85.8233,-43.3356,0,-34.0036	1/1:46:0,43,2:0:0:43,2:1515,68:-136.292,-12.9443,0,-130.777,-7.44182,-130.175	1/1:47:0,47,0:0:0:47,0:1653,0:-149.05,-14.1484,0,-149.05,-14.1484,-149.05	1/2:33:1,18,13:1:25:18,13:635,464:-87.3368,-35.9349,-32.4581,-49.8087,0,-47.839	1/1:26:0,26,0:0:0:26,0:903,0:-81.5814,-7.82678,0,-81.5814,-7.82678,-81.5814	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/1:30:0,30,0:0:0:30,0:1065,0:-96.1608,-9.0309,0,-96.1608,-9.0309,-96.1608	1/1:21:0,21,0:0:0:21,0:747,0:-67.5552,-6.32163,0,-67.5552,-6.32163,-67.5552	1/2:4:0,3,1:0:0:3,1:106,36:-11.9251,-3.29724,-2.39415,-8.98601,0,-8.68498	1/1:24:0,24,0:0:0:24,0:826,0:-74.6521,-7.22472,0,-74.6521,-7.22472,-74.6521	1/2:29:0,13,16:0:0:13,16:446,568:-82.8393,-46.6354,-42.722,-36.5522,0,-31.7357	1/1:11:0,11,0:0:0:11,0:384,0:-34.8943,-3.31133,0,-34.8943,-3.31133,-34.8943	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-3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chr11	26620162	.	ACA	GCA	46336.3	PASS	AB=0.411188;ABP=121.808;AC=141;AF=0.758065;AN=186;AO=2257;CIGAR=1X2M;DP=3293;DPB=3294.33;DPRA=0;EPP=4904.02;EPPR=2228.77;GTI=1;LEN=1;MEANALT=1.09677;MQM=59.9362;MQMR=60;NS=93;NUMALT=1;ODDS=1.58129;PAIRED=0;PAIREDR=0;PAO=2;PQA=70;PQR=0;PRO=0;QA=80729;QR=36218;RO=1025;RPL=2257;RPP=4904.02;RPPR=2228.77;RPR=0;RUN=1;SAF=0;SAP=4904.02;SAR=2257;SRF=0;SRP=2228.77;SRR=1025;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:35:20,15:20:710:15:540:-38.4005,0,-53.6898	0/1:72:43,29:43:1531:29:1040:-72.2402,0,-116.409	0/1:52:41,11:41:1428:11:388:-19.6038,0,-113.16	0/1:27:9,18:9:316:18:640:-49.8006,0,-20.6513	0/1:14:9,5:9:311:5:180:-12.3376,0,-24.1095	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:40:23,17:23:804:17:608:-43.0108,0,-60.6369	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:67:33,34:33:1152:34:1224:-90.298,0,-83.8147	0/1:42:25,17:25:894:17:609:-42.4772,0,-68.1371	1/1:25:0,25:0:0:25:883:-79.7875,-7.52575,0	0/1:33:18,15:18:644:15:521:-37.2247,0,-48.3	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:17:7,10:7:250:10:356:-27.2637,0,-17.7292	0/1:21:12,9:12:421:9:316:-22.4516,0,-31.9023	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:65:41,24:41:1465:24:860:-58.1549,0,-112.579	1/1:54:1,53:1:36:53:1885:-166.3,-12.6573,0	0/1:56:45,10:45:1602:10:360:-15.964,0,-127.701	0/1:39:19,20:19:669:20:712:-52.6665,0,-48.7958	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:75:37,38:37:1316:38:1360:-100.122,0,-96.1641	1/1:92:0,92:0:0:92:3304:-297.509,-27.6948,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:49:0,49:0:0:49:1756:-158.265,-14.7505,0	0/1:38:20,18:20:689:18:648:-47.2127,0,-50.8872	1/1:30:0,29:0:0:29:1036:-93.1942,-8.72987,0	0/1:10:4,6:4:133:6:216:-16.7802,0,-9.2878	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:107:65,42:65:2306:42:1508:-103.759,0,-175.59	0/1:58:42,15:42:1498:15:524:-29.9718,0,-117.596	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	.:.:.:.:.:.:.:.	0/1:51:32,19:32:1128:19:680:-46.1766,0,-86.4729	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:68:0,68:0:0:68:2448:-220.574,-20.47,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:39:24,15:24:841:15:540:-37.1964,0,-64.2678	0/1:46:31,15:31:1076:15:536:-34.7274,0,-83.2969	1/1:44:2,41:2:72:41:1472:-125.943,-6.4541,0	1/1:46:0,46:0:0:46:1652:-148.903,-13.8474,0	0/1:32:14,18:14:483:18:629:-47.3008,0,-34.1638	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:23:0,23:0:0:23:812:-73.4009,-6.92369,0	0/1:30:17,13:17:603:13:464:-33.0666,0,-45.5686	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:32:15,17:15:522:17:608:-45.4191,0,-37.6748	0/1:57:38,19:38:1356:19:684:-44.7316,0,-105.181	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:62:37,25:37:1306:25:887:-61.4843,0,-99.1767	1/1:57:1,53:1:36:53:1904:-168.039,-13.0172,0	0/1:20:6,14:6:216:14:504:-39.6775,0,-13.7699	0/1:41:34,7:34:1201:7:252:-10.6867,0,-96.0528	1/1:51:0,51:0:0:51:1813:-163.45,-15.3525,0	1/1:41:2,38:2:72:38:1352:-115.19,-5.46442,0	0/1:15:4,11:4:142:11:396:-31.4673,0,-8.61376	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:80:0,79:0:0:79:2813:-253.049,-23.7814,0	0/1:40:25,15:25:879:15:536:-36.5336,0,-67.3852	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:54:33,21:33:1178:21:756:-52.1116,0,-90.0718	0/1:42:23,19:23:803:19:676:-48.5247,0,-59.9434	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/1:11:8,3:8:286:3:108:-6.76384,0,-22.7742	0/1:13:8,5:8:277:5:176:-12.2716,0,-21.3525	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:63:0,61:0:0:61:2180:-195.952,-18.3628,0	0/1:39:22,17:22:785:17:608:-43.3119,0,-59.234	1/1:43:0,43:0:0:43:1531:-138.082,-12.9443,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:70:0,70:0:0:70:2501:-225.339,-21.0721,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:44:31,13:31:1086:13:468:-29.2061,0,-84.8018	0/1:40:27,13:27:948:13:468:-30.4184,0,-73.5912	0/1:25:9,16:9:322:16:572:-44.2877,0,-21.7985	0/1:65:31,34:31:1108:34:1224:-90.9001,0,-80.4635	0/1:40:25,15:25:885:15:536:-36.5336,0,-67.9269	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0
chr11	26623312	.	C	T	10036.8	PASS	AB=0.332123;ABP=542.529;AC=21;AF=0.112903;AN=186;AO=743;CIGAR=1X;DP=8170;DPB=8170;DPRA=1.43194;EPP=1573.28;EPPR=15763.4;GTI=1;LEN=1;MEANALT=1.03704;MQM=59.9933;MQMR=59.9974;NS=93;NUMALT=1;ODDS=4.30749;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26648;QR=265017;RO=7421;RPL=738;RPP=1573.28;RPPR=15763.4;RPR=5;RUN=1;SAF=743;SAP=1616.41;SAR=0;SRF=7421;SRP=16117.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:111:111,0:111:3962:0:0:0,-33.4143,-356.771	0/0:165:165,0:165:5894:0:0:0,-49.6699,-530.57	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/0:92:91,1:91:3263:1:36:0,-24.0965,-290.291	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.295	0/0:51:51,0:51:1815:0:0:0,-15.3525,-163.631	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.044	0/0:55:55,0:55:1958:0:0:0,-16.5566,-176.494	0/0:56:56,0:56:1986:0:0:0,-16.8577,-179.013	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:154:154,0:154:5489:0:0:0,-46.3586,-494.138	0/0:162:162,0:162:5804:0:0:0,-48.7669,-522.473	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.978	0/0:125:125,0:125:4492:0:0:0,-37.6287,-404.447	0/1:117:81,36:81:2886:36:1296:-81.7201,0,-224.755	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/1:304:174,130:174:6195:130:4659:-327.957,0,-466.093	0/0:274:274,0:274:9781:0:0:0,-82.4822,-880.239	0/1:53:37,16:37:1328:16:576:-36.2204,0,-103.868	0/0:262:262,0:262:9351:0:0:0,-78.8699,-841.555	0/0:140:138,2:138:4936:2:72:0,-35.3075,-437.554	0/1:123:96,27:96:3409:27:972:-50.7712,0,-269.998	0/1:10:8,2:8:279:2:72:-3.82642,0,-22.4372	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	.:.:.:.:.:.:.:.	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:20:15,5:15:532:5:180:-10.5315,0,-42.1925	0/0:176:174,0:174:6226:0:0:0,-52.3792,-560.075	0/0:129:128,1:128:4558:1:36:0,-35.2346,-406.789	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:148:105,43:105:3739:43:1544:-94.7006,0,-292.159	0/1:37:26,11:26:936:11:396:-24.8446,0,-73.4214	0/0:134:134,0:134:4753:0:0:0,-40.338,-427.931	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:53:53,0:53:1865:0:0:0,-15.9546,-168.127	0/0:118:118,0:118:4206:0:0:0,-35.5215,-378.721	0/0:113:113,0:113:4024:0:0:0,-34.0164,-362.351	0/1:193:115,78:115:4093:78:2787:-192.971,0,-310.457	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:105:105,0:105:3743:0:0:0,-31.6081,-337.071	0/0:114:114,0:114:4053:0:0:0,-34.3174,-364.958	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:147:99,48:99:3542:48:1724:-111.194,0,-274.736	0/0:63:61,0:61:2180:0:0:0,-18.3628,-196.106	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/1:197:123,74:123:4363:74:2656:-179.983,0,-333.545	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:83:83,0:83:2988:0:0:0,-24.9855,-269.151	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:152:152,0:152:5418:0:0:0,-45.7566,-487.751	0/0:122:122,0:122:4360:0:0:0,-36.7257,-392.575	0/1:77:55,22:55:1976:22:784:-47.7046,0,-154.935	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/0:148:148,0:148:5291:0:0:0,-44.5524,-476.325	0/0:150:147,2:147:5231:2:72:0,-38.3766,-464.094	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/0:51:51,0:51:1810:0:0:0,-15.3525,-163.18	0/1:23:12,11:12:432:11:396:-29.0591,0,-32.2975	0/0:217:216,0:216:7713:0:0:0,-65.0225,-693.844	0/1:76:35,41:35:1256:41:1461:-108.907,0,-90.467	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.326	0/0:143:143,0:143:5112:0:0:0,-43.0473,-460.221	0/1:101:77,24:77:2760:24:849:-46.3238,0,-218.237	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:145:106,39:106:3741:39:1404:-83.0099,0,-293.241	0/0:193:192,1:192:6845:1:36:0,-54.5005,-612.523	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:30:30,0:30:1059:0:0:0,-9.0309,-95.6204	0/0:130:130,0:130:4635:0:0:0,-39.1339,-417.314	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:92:65,27:65:2332:27:972:-60.1031,0,-182.445	0/1:109:84,25:84:3015:25:900:-48.5087,0,-238.767	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:108:79,29:79:2840:29:1040:-61.4031,0,-223.326	0/1:101:68,33:68:2440:33:1188:-76.8246,0,-189.451	0/0:110:106,4:106:3783:4:144:0,-19.7997,-327.355	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122
chr11	26623319	.	G	C	9433.23	PASS	AB=0.332105;ABP=534.567;AC=21;AF=0.112903;AN=186;AO=730;CIGAR=1X;DP=8029;DPB=8029;DPRA=1.48162;EPP=1579.51;EPPR=3864.47;GTI=1;LEN=1;MEANALT=1.14286;MQM=59.9877;MQMR=59.9971;NS=93;NUMALT=1;ODDS=2.977;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25725;QR=259356;RO=7288;RPL=729;RPP=1579.51;RPPR=3864.47;RPR=1;RUN=1;SAF=730;SAP=1588.19;SAR=0;SRF=7288;SRP=15828.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:112:112,0:112:3960:0:0:0,-33.7154,-356.594	0/0:161:161,0:161:5720:0:0:0,-48.4658,-514.92	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/0:100:100,0:100:3566:0:0:0,-30.103,-321.148	0/0:88:88,0:88:3138:0:0:0,-26.4906,-282.645	0/0:90:89,1:89:3168:1:36:0,-23.4944,-281.748	0/0:67:67,0:67:2371:0:0:0,-20.169,-213.649	0/0:51:51,0:51:1820:0:0:0,-15.3525,-164.081	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/0:52:51,0:51:1802:0:0:0,-15.3525,-162.14	0/0:57:57,0:57:2022:0:0:0,-17.1587,-182.252	0/0:55:54,1:54:1927:1:21:0,-14.4568,-171.606	0/0:56:56,0:56:1975:0:0:0,-16.8577,-178.022	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:30:29,0:29:1031:0:0:0,-8.72987,-92.7429	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:147:147,0:147:5234:0:0:0,-44.2514,-471.2	0/0:155:155,0:155:5516:0:0:0,-46.6596,-496.563	0/0:85:85,0:85:3023:0:0:0,-25.5875,-272.301	0/0:125:125,0:125:4471:0:0:0,-37.6287,-402.559	0/1:114:78,36:78:2779:36:1279:-81.0917,0,-216.034	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:304:174,130:174:6198:130:4617:-324.183,0,-466.362	0/0:271:271,0:271:9612:0:0:0,-81.5791,-865.041	0/1:54:38,16:38:1364:16:567:-35.1058,0,-106.805	0/0:254:254,0:254:9029:0:0:0,-76.4616,-812.596	0/0:135:133,2:133:4736:2:68:0,-34.1813,-419.941	0/1:119:92,26:92:3287:26:915:-46.7845,0,-260.168	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	.:.:.:.:.:.:.:.	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:21:16,5:16:572:5:176:-9.86339,0,-45.4918	0/0:175:175,0:175:6244:0:0:0,-52.6802,-562.055	0/0:126:124,1:124:4406:1:36:0,-34.3903,-393.116	0/0:37:37,0:37:1294:0:0:0,-11.1381,-116.757	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:145:104,41:104:3724:41:1449:-87.0554,0,-291.712	0/1:35:24,11:24:864:11:387:-24.6299,0,-67.5465	0/0:128:128,0:128:4555:0:0:0,-38.5318,-410.119	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:53:52,0:52:1842:0:0:0,-15.6536,-165.699	0/0:118:118,0:118:4228:0:0:0,-35.5215,-380.7	0/0:108:108,0:108:3844:0:0:0,-32.5112,-346.158	0/1:191:115,76:115:4090:76:2688:-184.668,0,-310.79	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321	0/0:103:103,0:103:3696:0:0:0,-31.0061,-332.842	0/0:120:119,0:119:4190:0:0:0,-35.8226,-376.925	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:142:94,48:94:3368:48:1682:-108.919,0,-260.59	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/1:22:12,10:12:432:10:349:-25.1221,0,-32.5985	0/1:194:120,74:120:4278:74:2616:-177.287,0,-326.799	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:85:85,0:85:2999:0:0:0,-25.5875,-270.141	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:151:151,0:151:5373:0:0:0,-45.4555,-483.704	0/0:118:118,0:118:4198:0:0:0,-35.5215,-378.003	0/1:75:54,21:54:1932:21:756:-45.79,0,-151.579	0/0:50:50,0:50:1771:0:0:0,-15.0515,-159.672	0/0:144:144,0:144:5102:0:0:0,-43.3483,-459.325	0/0:151:149,2:149:5316:2:72:0,-38.6188,-471.74	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/1:23:12,11:12:416:11:388:-28.3337,0,-30.8479	0/0:209:208,1:208:7350:1:36:0,-59.317,-657.96	0/1:73:34,39:34:1200:39:1361:-100.811,0,-86.3304	0/0:127:126,0:126:4512:0:0:0,-37.9298,-405.888	0/0:143:143,0:143:5079:0:0:0,-43.0473,-457.256	0/1:100:73,24:73:2587:24:860:-48.1623,0,-203.517	0/0:58:58,0:58:2055:0:0:0,-17.4597,-185.221	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:67:67,0:67:2369:0:0:0,-20.169,-213.467	0/1:147:107,40:107:3801:40:1399:-81.9549,0,-298.037	0/0:191:190,1:190:6754:1:36:0,-53.8985,-604.338	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/0:126:126,0:126:4477:0:0:0,-37.9298,-403.101	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:91:64,27:64:2247:27:925:-56.163,0,-175.097	0/1:108:83,24:83:2957:24:836:-42.9851,0,-233.792	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.844	0/1:105:77,28:77:2750:28:972:-56.181,0,-216.133	0/1:99:67,32:67:2382:32:1126:-71.8446,0,-184.835	0/0:106:106,0:106:3779:0:0:0,-31.9092,-340.31	0/0:77:77,0:77:2754:0:0:0,-23.1793,-248.101
chr11	26653378	.	AGA	GGG,AGG	273664	PASS	AB=0.589777,0.406572;ABP=328.962,356.014;AC=148,40;AF=0.787234,0.212766;AN=188;AO=15215,1965;CIGAR=1X1M1X,2M1X;DP=17233;DPB=18754.3;DPRA=0,0.946925;EPP=31099.7,3715.94;EPPR=0;GTI=2;LEN=3,1;MEANALT=2.01064,2.42857;MQM=28.1291,47.8738;MQMR=0;NS=94;NUMALT=2;ODDS=21.7932;PAIRED=0,0;PAIREDR=0;PAO=4564,0;PQA=104516,0;PQR=0;PRO=0;QA=533234,70297;QR=0;RO=0;RPL=227,1900;RPP=31099.7,3724.05;RPPR=0;RPR=14988,65;RUN=1,1;SAF=0,1;SAP=33042,4261.27;SAR=15215,1964;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16,0:0:0:16,0:572,0:-39.6144,-4.81648,0,-39.6144,-4.81648,-39.6144	1/2:180:0,99,81:0:0:99,81:3401,2904:-444.299,-235.023,-205.221,-209.592,0,-185.209	1/2:120:0,76,44:0:0:76,44:2668,1584:-291.405,-128.539,-105.661,-163.192,0,-149.947	1/2:153:0,78,75:0:0:78,75:2743,2680:-383.761,-216.417,-192.936,-167.376,0,-144.798	1/2:87:0,42,44:0:0:42,44:1480,1571:-217.086,-127.223,-114.58,-89.8841,0,-76.6388	1/2:50:0,21,29:0:0:21,29:749,1040:-129.632,-84.4049,-78.0832,-45.5343,0,-36.8044	1/1:79:0,79,0:0:0:79,0:2776,0:-192.56,-23.7814,0,-192.56,-23.7814,-192.56	1/1:175:0,174,1:0:0:174,1:6099,36:-426.083,-52.3792,0,-423.163,-49.1015,-422.862	1/2:86:0,56,29:0:0:56,29:1969,1036:-203.665,-83.6566,-66.7989,-120.085,0,-111.355	1/1:105:0,105,0:0:0:105,0:3681,0:-257.283,-31.6082,0,-257.283,-31.6082,-257.283	1/1:436:0,435,0:0:0:435,0:15261,0:-1064.13,-130.948,0,-1064.13,-130.948,-1064.13	1/2:69:0,25,43:0:0:25,43:859,1536:-176.83,-123.829,-116.303,-53.028,0,-40.0837	1/2:68:0,31,37:0:0:31,37:1093,1328:-174.326,-107.821,-98.4886,-66.8155,0,-55.6773	1/1:66:0,66,0:0:0:66,0:2296,0:-160.299,-19.868,0,-160.299,-19.868,-160.299	1/2:75:0,31,43:0:0:31,43:1086,1540:-190.622,-124.171,-114.84,-66.493,0,-53.5487	1/1:48:0,47,1:0:0:47,1:1654,36:-115.674,-14.1484,0,-112.758,-11.2301,-112.457	1/2:78:0,34,44:0:0:34,44:1204,1572:-201.025,-127.834,-117.599,-73.4991,0,-60.2538	1/2:57:0,31,26:0:0:31,26:1108,936:-143.134,-76.2919,-66.9599,-67.1611,0,-59.3343	1/1:288:0,286,0:0:0:286,0:10121,0:-703.101,-86.0946,0,-703.101,-86.0946,-703.101	1/2:62:0,35,27:0:0:35,27:1245,968:-153.34,-77.939,-67.403,-75.414,0,-67.2861	1/1:139:0,139,0:0:0:139,0:4845,0:-338.106,-41.8432,0,-338.106,-41.8432,-338.106	1/2:27:0,5,22:0:0:5,22:164,792:-74.5119,-64.3854,-62.8802,-10.4036,0,-3.78092	1/2:37:0,13,24:0:0:13,24:450,848:-95.6832,-68.323,-64.4096,-27.3683,0,-20.1436	1/1:92:0,92,0:0:0:92,0:3244,0:-225.337,-27.6948,0,-225.337,-27.6948,-225.337	1/1:39:0,39,0:0:0:39,0:1365,0:-95.2341,-11.7402,0,-95.2341,-11.7402,-95.2341	1/2:233:0,111,122:0:0:111,122:3850,4364:-587.681,-351.559,-318.145,-236.303,0,-199.577	1/1:198:0,198,0:0:0:198,0:6925,0:-483.351,-59.6039,0,-483.351,-59.6039,-483.351	1/1:28:0,28,0:0:0:28,0:990,0:-68.2206,-8.42884,0,-68.2206,-8.42884,-68.2206	1/1:144:0,143,0:0:0:143,0:5030,0:-349.483,-43.0473,0,-349.483,-43.0473,-349.483	1/2:136:0,73,62:0:0:73,62:2567,2203:-334.6,-177.948,-155.973,-156.694,0,-138.03	1/1:81:0,80,1:0:0:80,1:2843,36:-196.562,-24.0824,0,-193.624,-21.1435,-193.322	1/1:367:0,366,1:0:0:366,1:12877,36:-896.759,-110.177,0,-893.831,-107.228,-893.53	1/1:652:0,648,1:0:0:648,1:22759,36:-1585.01,-195.067,0,-1582.1,-192.14,-1581.8	1/1:1250:0,1245,0:0:0:1245,0:43491,0:-3039.48,-374.782,0,-3039.48,-374.782,-3039.48	1/1:1320:0,1309,3:0:0:1309,3:45853,108:-3201.19,-394.048,0,-3192.48,-385.316,-3191.58	1/1:713:0,711,0:0:0:711,0:24895,0:-1735.51,-214.032,0,-1735.51,-214.032,-1735.51	1/2:209:0,92,117:0:0:92,117:3249,4180:-535.112,-336.744,-309.05,-198.543,0,-163.323	1/2:99:0,51,48:0:0:51,48:1791,1703:-247.519,-137.832,-122.479,-109.715,0,-95.266	1/1:481:0,479,0:0:0:479,0:16771,0:-1167.38,-144.193,0,-1167.38,-144.193,-1167.38	1/1:519:0,519,0:0:0:519,0:18060,0:-1264.94,-156.235,0,-1264.94,-156.235,-1264.94	1/2:145:0,78,65:0:0:78,65:2741,2328:-355.169,-187.509,-164.029,-167.689,0,-148.122	1/1:189:0,188,1:0:0:188,1:6619,36:-459.377,-56.5936,0,-456.509,-53.7211,-456.208	1/1:102:0,102,0:0:0:102,0:3555,0:-248.346,-30.7051,0,-248.346,-30.7051,-248.346	1/1:71:0,71,0:0:0:71,0:2456,0:-172.179,-21.3731,0,-172.179,-21.3731,-172.179	1/1:67:0,67,0:0:0:67,0:2357,0:-163.781,-20.169,0,-163.781,-20.169,-163.781	1/2:101:0,58,43:0:0:58,43:2019,1532:-246.921,-123.604,-106.145,-123.634,0,-110.689	1/2:66:0,39,27:0:0:39,27:1353,963:-161.186,-78.4366,-66.6965,-83.0695,0,-74.9417	1/1:147:0,146,0:0:0:146,0:5133,0:-356.957,-43.9504,0,-356.957,-43.9504,-356.957	1/1:44:0,44,0:0:0:44,0:1542,0:-108.787,-13.2453,0,-108.787,-13.2453,-108.787	1/2:127:0,77,50:0:0:77,50:2692,1800:-309.867,-145.291,-122.112,-164.652,0,-149.6	1/1:91:0,91,0:0:0:91,0:3202,0:-222.562,-27.3937,0,-222.562,-27.3937,-222.562	1/2:532:0,418,110:0:0:418,110:14727,3926:-1212.92,-316.539,-190.709,-896.525,0,-863.412	1/1:126:0,125,1:0:0:125,1:4415,36:-307.302,-37.6288,0,-304.381,-34.351,-304.08	1/1:28:0,28,0:0:0:28,0:992,0:-68.8204,-8.42884,0,-68.8204,-8.42884,-68.8204	1/1:331:0,318,12:0:0:318,12:11104,428:-775.501,-95.7275,0,-741.108,-61.2649,-737.496	1/1:93:0,93,0:0:0:93,0:3294,0:-228.986,-27.9958,0,-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chr11	26653387	.	C	T	216589	PASS	AB=0.601313;ABP=437.725;AC=147;AF=0.781915;AN=188;AO=15162;CIGAR=1X;DP=17170;DPB=17170;DPRA=0;EPP=32926.9;EPPR=4341.63;GTI=3;LEN=1;MEANALT=1.02128;MQM=28.1257;MQMR=47.819;NS=94;NUMALT=1;ODDS=13.4899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=539666;QR=71731;RO=2006;RPL=15162;RPP=32926.9;RPPR=4341.63;RPR=0;RUN=1;SAF=0;SAP=32926.9;SAR=15162;SRF=0;SRP=4358.98;SRR=2006;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:557:-38.9534,-4.81648,0	0/1:180:83,97:83:2969:97:3465:-184.31,0,-211.046	0/1:121:45,76:45:1612:76:2713:-150.367,0,-107.88	0/1:155:77,78:77:2753:78:2759:-143.78,0,-199.118	0/1:86:45,41:45:1616:41:1472:-75.2773,0,-118.593	0/1:50:29,21:29:1021:21:726:-35.6432,0,-76.3796	1/1:79:0,79:0:0:79:2821:-193.784,-23.7814,0	1/1:175:2,173:2:68:173:6205:-420.912,-46.2719,0	0/1:86:31,55:31:1112:55:1942:-108.391,0,-73.4159	1/1:104:0,104:0:0:104:3661:-253.909,-31.3071,0	1/1:433:2,431:2:72:431:15327:-1050.14,-124.402,0	0/1:71:46,25:46:1656:25:900:-40.465,0,-126.085	0/1:66:35,31:35:1256:31:1101:-56.1002,0,-92.6344	1/1:66:0,66:0:0:66:2372:-162.881,-19.868,0	0/1:73:44,29:44:1569:29:1029:-49.0677,0,-117.975	1/1:47:2,45:2:72:45:1616:-104.277,-7.40869,0	0/1:78:44,34:44:1580:34:1209:-60.0262,0,-118.311	0/1:58:27,31:27:972:31:1108:-59.0066,0,-69.8893	1/1:282:1,281:1:36:281:9963:-685.454,-81.3695,0	0/1:61:26,35:26:936:35:1260:-68.1778,0,-65.143	1/1:139:0,139:0:0:139:4947:-340.648,-41.8432,0	0/1:27:22,5:22:792:5:172:-4.8025,0,-62.8802	0/1:38:25,13:25:877:13:468:-20.848,0,-66.9825	1/1:91:0,91:0:0:91:3253:-223.728,-27.3937,0	1/1:39:0,39:0:0:39:1400:-96.2407,-11.7402,0	0/1:235:124,111:124:4433:111:3934:-200.768,0,-323.821	1/1:196:0,196:0:0:196:7002:-482.502,-59.0019,0	1/1:28:0,28:0:0:28:989:-68.17,-8.42884,0	1/1:143:0,143:0:0:143:5042:-348.946,-43.0473,0	0/1:139:65,74:65:2313:74:2611:-138.721,0,-165.027	1/1:81:1,80:1:36:80:2850:-192.47,-20.7852,0	1/1:367:3,364:3:108:364:12937:-881.174,-100.558,0	1/1:648:1,647:1:36:647:22899:-1576.17,-191.494,0	1/1:1246:0,1245:0:0:1245:44413:-3056.74,-374.782,0	1/1:1317:3,1314:3:108:1314:46664:-3212.56,-386.49,0	1/1:711:0,711:0:0:711:25288:-1741.43,-214.032,0	0/1:209:117,92:117:4193:92:3289:-164.106,0,-309.783	0/1:100:49,51:49:1748:51:1828:-96.3703,0,-126.461	1/1:467:0,467:0:0:467:16703:-1145.83,-140.581,0	1/1:514:0,514:0:0:514:18270:-1260.54,-154.729,0	0/1:146:67,79:67:2355:79:2813:-150.684,0,-165.884	1/1:187:0,187:0:0:187:6690:-460.202,-56.2926,0	1/1:102:0,102:0:0:102:3533:-245.922,-30.7051,0	1/1:69:0,68:0:0:68:2429:-166.965,-20.47,0	1/1:67:0,67:0:0:67:2408:-165.193,-20.169,0	0/1:102:44,58:44:1576:58:2035:-110.61,0,-109.74	0/1:66:28,38:28:1004:38:1368:-73.9838,0,-70.364	1/1:145:0,145:0:0:145:5174:-355.767,-43.6494,0	1/1:44:0,44:0:0:44:1580:-109.981,-13.2453,0	0/1:129:52,77:52:1872:77:2742:-149.848,0,-128.198	1/1:91:0,91:0:0:91:3219:-222.443,-27.3937,0	0/1:532:110,422:110:3933:422:15055:-875.281,0,-189.988	1/1:126:1,125:1:36:125:4465:-305.091,-34.351,0	1/1:28:0,28:0:0:28:1008:-69.2259,-8.42884,0	1/1:330:13,317:13:464:317:11317:-737.044,-57.9162,0	1/1:92:0,92:0:0:92:3289:-227.466,-27.6948,0	0/1:36:16,20:16:568:20:720:-40.1561,0,-40.1924	1/1:761:0,761:0:0:761:27106:-1869.87,-229.084,0	1/1:627:1,626:1:36:626:22234:-1531.22,-185.179,0	0/1:45:21,24:21:748:24:864:-45.8292,0,-53.5801	0/1:85:43,42:43:1539:42:1512:-78.1145,0,-111.899	1/1:272:1,271:1:36:271:9601:-660.731,-78.3133,0	0/1:86:64,22:64:2292:22:773:-27.8417,0,-178.32	1/1:168:2,166:2:72:166:5908:-399.634,-43.7898,0	0/1:62:30,32:30:1065:32:1152:-60.489,0,-76.7371	0/1:59:21,38:21:748:38:1356:-77.1877,0,-48.9834	1/1:181:0,181:0:0:181:6448:-445.782,-54.4864,0	1/1:60:1,59:1:36:59:2090:-141.014,-14.495,0	0/1:211:21,190:21:752:190:6741:-403.528,0,-3.93578	1/1:68:0,68:0:0:68:2429:-169.006,-20.47,0	1/1:92:0,92:0:0:92:3251:-224.682,-27.6948,0	1/1:328:14,314:14:500:314:11137:-722.952,-53.7913,0	1/1:39:0,39:0:0:39:1392:-96.9995,-11.7402,0	0/1:44:24,20:24:864:20:720:-36.3568,0,-64.4354	1/1:129:0,129:0:0:129:4610:-316.892,-38.8329,0	0/1:106:50,56:50:1777:56:1982:-105.36,0,-125.64	0/1:104:59,45:59:2116:45:1592:-78.8795,0,-158.464	0/1:126:59,67:59:2120:67:2374:-126.223,0,-151.273	1/1:420:13,407:13:468:407:14484:-955.627,-84.6786,0	0/1:105:43,62:43:1521:62:2220:-121.329,0,-104.621	1/1:81:0,81:0:0:81:2893:-200.611,-24.3834,0	1/1:183:0,183:0:0:183:6493:-448.919,-55.0885,0	0/1:101:64,37:64:2289:37:1328:-60.6684,0,-173.813	1/1:49:0,49:0:0:49:1749:-122.048,-14.7505,0	1/1:101:0,101:0:0:101:3624:-249.681,-30.404,0	1/1:142:0,142:0:0:142:5070:-348.605,-42.7463,0	1/1:48:1,47:1:36:47:1673:-112.531,-10.9284,0	0/1:58:29,29:29:1040:29:1044:-54.9852,0,-75.9595	0/1:66:35,31:35:1252:31:1112:-56.672,0,-91.5264	0/1:263:32,231:32:1152:231:8270:-488.956,0,-23.2757	0/1:435:45,390:45:1616:390:13934:-828.239,0,-13.4656	0/1:76:53,23:53:1904:23:809:-34.1486,0,-147.301	1/1:4:0,4:0:0:4:144:-10.0429,-1.20412,0	1/1:71:0,71:0:0:71:2537:-175.154,-21.3731,0
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chr11	26829083	.	A	C	17636.1	PASS	AB=0.376568;ABP=435.61;AC=43;AF=0.228723;AN=188;AO=1238;CIGAR=1X;DP=7725;DPB=7725;DPRA=1.05999;EPP=2691.29;EPPR=14069.8;GTI=3;LEN=1;MEANALT=1.02041;MQM=54.3998;MQMR=59.6175;NS=94;NUMALT=1;ODDS=0.363818;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44292;QR=232738;RO=6486;RPL=1238;RPP=2691.29;RPPR=14069.8;RPR=0;RUN=1;SAF=1238;SAP=2691.29;SAR=0;SRF=6486;SRP=14087.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:716:0:0:0,-6.0206,-63.5622	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.467	0/1:120:80,40:80:2872:40:1440:-93.262,0,-222.585	0/1:160:107,53:107:3844:53:1891:-122.068,0,-297.975	0/1:62:48,14:48:1716:14:495:-25.9032,0,-135.922	0/1:20:7,13:7:252:13:460:-35.6179,0,-17.0084	0/0:148:148,0:148:5313:0:0:0,-44.5524,-477.08	0/0:140:140,0:140:5005:0:0:0,-42.1442,-449.105	0/1:32:13,19:13:468:19:680:-51.7455,0,-32.8267	0/0:78:78,0:78:2777:0:0:0,-23.4803,-250.164	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.752	0/1:35:20,15:20:720:15:540:-38.0534,0,-54.5927	0/1:39:24,15:24:864:15:540:-36.888,0,-66.3342	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:27:18,9:18:648:9:320:-20.9629,0,-50.5217	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.021	0/1:39:26,13:26:936:13:459:-29.7807,0,-72.3821	0/0:25:24,1:24:860:1:36:0,-3.93652,-74.1326	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8739	0/1:209:139,70:139:4988:70:2494:-161.515,0,-386.099	0/0:100:100,0:100:3565:0:0:0,-30.103,-320.96	0/1:115:54,61:54:1944:61:2178:-161.265,0,-139.592	0/1:26:14,12:14:504:12:428:-31.0052,0,-37.8666	0/0:68:67,1:67:2408:1:36:0,-16.8769,-213.24	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.994	0/1:328:206,122:206:7400:122:4362:-293.03,0,-567.261	0/0:218:218,0:218:7809:0:0:0,-65.6245,-702.796	0/1:15:10,5:10:360:5:180:-12.0131,0,-28.2289	0/0:372:371,1:371:13309:1:36:0,-108.386,-1193.05	0/1:110:64,46:64:2304:46:1652:-115.498,0,-174.493	0/0:54:54,0:54:1940:0:0:0,-16.2556,-173.934	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9273	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5156	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8821	0/1:70:38,32:38:1368:32:1152:-82.7771,0,-102.347	0/1:161:96,65:96:3452:65:2336:-160.622,0,-262.389	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.886	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:96:51,45:51:1832:45:1607:-115.495,0,-136.238	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.938	0/0:154:154,0:154:5486:0:0:0,-46.3586,-493.33	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5278	0/0:33:33,0:33:1180:0:0:0,-9.93399,-105.646	0/1:53:19,34:19:684:34:1216:-93.6992,0,-45.9357	0/1:117:92,25:92:3293:25:900:-45.7025,0,-261.342	0/0:205:205,0:205:7364:0:0:0,-61.7111,-662.751	0/0:133:133,0:133:4769:0:0:0,-40.037,-429.296	0/1:139:88,51:88:3160:51:1832:-122.946,0,-242.684	0/0:201:201,0:201:7220:0:0:0,-60.507,-648.812	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7204	0/0:148:148,0:148:5300:0:0:0,-44.5524,-476.765	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:27:15,12:15:540:12:428:-30.6373,0,-40.8087	0/0:225:225,0:225:8092:0:0:0,-67.7317,-726.234	0/1:17:9,8:9:324:8:284:-20.7116,0,-24.3883	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1216	0/1:47:32,15:32:1152:15:540:-34.593,0,-89.8371	0/1:66:51,15:51:1832:15:540:-29.0333,0,-145.288	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	0/1:192:129,63:129:4644:63:2260:-145.678,0,-360.316	0/0:207:205,1:205:7372:1:36:0,-58.7761,-659.851	0/1:41:21,20:21:752:20:703:-51.1042,0,-55.6622	0/1:82:58,24:58:2076:24:864:-53.3418,0,-161.704	0/0:105:103,2:103:3700:2:72:0,-24.7764,-326.349	0/0:93:92,1:92:3304:1:36:0,-24.4001,-292.932	0/1:15:6,9:6:216:9:324:-24.9486,0,-15.2751	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.069	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.233	0/1:19:14,5:14:500:5:180:-10.8206,0,-39.6166	0/0:116:116,0:116:4164:0:0:0,-34.9195,-374.776	0/1:39:22,17:22:792:17:612:-43.5284,0,-59.8655	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.322	0/1:160:112,48:112:4024:48:1704:-105.228,0,-314.171	0/1:94:41,53:41:1464:53:1900:-142.363,0,-103.686	0/1:77:55,22:55:1976:22:792:-48.2333,0,-154.898	0/1:8:4,4:4:144:4:144:-10.8719,0,-10.9054	0/1:135:84,51:84:3020:51:1813:-122.443,0,-231.345	0/0:166:166,0:166:5957:0:0:0,-49.971,-535.694	0/0:263:263,0:263:9433:0:0:0,-79.1709,-848.91	0/1:83:51,32:51:1828:32:1143:-78.1135,0,-139.815	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.313	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.442	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.333	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6899	0/1:34:18,16:18:648:16:576:-41.7755,0,-48.416	0/1:44:28,16:28:1008:16:576:-38.7985,0,-77.791	0/1:21:16,5:16:576:5:176:-9.84273,0,-45.8487	0/1:56:39,17:39:1400:17:599:-37.1794,0,-109.437	0/1:35:16,19:16:576:19:684:-51.3096,0,-41.6389	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.072	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.224
chr11	26829174	.	T	C	143656	PASS	AB=0.609477;ABP=339.154;AC=143;AF=0.760638;AN=188;AO=6658;CIGAR=1X;DP=7925;DPB=7925;DPRA=0;EPP=14443.3;EPPR=2754.27;GTI=5;LEN=1;MEANALT=1;MQM=59.9561;MQMR=59.9992;NS=94;NUMALT=1;ODDS=2.4054;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=238189;QR=45490;RO=1267;RPL=2;RPP=14443.3;RPPR=2754.27;RPR=6656;RUN=1;SAF=0;SAP=14460.7;SAR=6658;SRF=0;SRP=2754.27;SRR=1267;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:68:0,68:0:0:68:2433:-219.224,-20.47,0	1/1:99:0,99:0:0:99:3564:-320.966,-29.802,0	0/1:58:20,38:20:720:38:1364:-105.601,0,-47.669	0/1:194:70,124:70:2497:124:4426:-340.109,0,-166.581	0/1:49:18,31:18:644:31:1101:-84.6455,0,-43.54	0/1:46:18,28:18:640:28:996:-76.1075,0,-44.0819	1/1:160:1,159:1:36:159:5691:-508.71,-44.5665,0	1/1:123:0,123:0:0:123:4401:-396.261,-37.0267,0	0/1:100:30,70:30:1076:70:2504:-195.51,0,-67.0499	1/1:105:1,104:1:36:104:3724:-331.763,-28.0099,0	1/1:30:1,29:1:32:29:1040:-90.715,-5.83159,0	0/1:34:12,22:12:432:22:788:-61.0098,0,-28.9862	0/1:36:14,22:14:504:22:792:-60.7686,0,-34.861	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	0/1:44:14,30:14:500:30:1080:-84.2679,0,-32.0909	1/1:30:0,30:0:0:30:1063:-95.9688,-9.0309,0	0/1:58:22,36:22:792:36:1271:-97.2324,0,-54.1459	0/1:19:6,13:6:212:13:451:-35.2002,0,-13.7052	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:201:82,119:82:2952:119:4280:-324.869,0,-205.405	1/1:133:0,133:0:0:133:4733:-426.125,-40.037,0	0/1:159:97,62:97:3484:62:2209:-151.209,0,-265.907	0/1:45:10,35:10:360:35:1260:-100.159,0,-19.198	1/1:146:0,146:0:0:146:5244:-472.095,-43.9504,0	1/1:76:0,76:0:0:76:2717:-244.769,-22.8783,0	0/1:295:114,181:114:4104:181:6484:-494.838,0,-280.739	1/1:197:0,197:0:0:197:7064:-635.814,-59.3029,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:312:1,311:1:36:311:11125:-997.537,-90.3231,0	0/1:129:58,71:58:2080:71:2529:-189.027,0,-148.637	1/1:131:0,131:0:0:131:4670:-420.46,-39.4349,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:11:0,11:0:0:11:396:-35.965,-3.31133,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:100:31,69:31:1108:69:2448:-190.471,0,-69.928	0/1:195:80,115:80:2880:115:4140:-314.08,0,-200.735	1/1:39:0,39:0:0:39:1385:-124.948,-11.7402,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:104:51,53:51:1832:53:1889:-138.979,0,-133.854	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:104:0,104:0:0:104:3725:-335.449,-31.3071,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:41:0,41:0:0:41:1454:-131.154,-12.3422,0	0/1:127:24,103:24:860:103:3680:-293.171,0,-39.491	0/1:93:43,50:43:1548:50:1782:-132.667,0,-111.617	1/1:203:0,203:0:0:203:7260:-653.439,-61.1091,0	1/1:162:0,162:0:0:162:5807:-522.742,-48.7669,0	0/1:86:36,50:36:1296:50:1777:-134.322,0,-91.0554	1/1:236:1,235:1:36:235:8364:-749.136,-67.4448,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:109:0,109:0:0:109:3912:-352.272,-32.8123,0	1/1:68:0,68:0:0:68:2429:-218.864,-20.47,0	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	1/1:144:0,144:0:0:144:5160:-464.54,-43.3483,0	0/1:34:10,24:10:360:24:860:-67.4868,0,-22.5093	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:22:0,22:0:0:22:783:-70.7929,-6.62266,0	0/1:58:24,34:24:856:34:1224:-92.9967,0,-59.9014	0/1:71:25,46:25:896:46:1652:-127.595,0,-59.5872	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:151:71,80:71:2556:80:2876:-213.621,0,-184.834	1/1:228:1,227:1:36:227:8140:-729.012,-65.0366,0	0/1:43:13,30:13:468:30:1061:-82.4845,0,-29.5154	0/1:70:39,31:39:1404:31:1112:-79.3192,0,-105.587	1/1:192:0,192:0:0:192:6834:-615.086,-57.7978,0	1/1:126:0,126:0:0:126:4520:-406.897,-37.9298,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:91:0,91:0:0:91:3264:-293.934,-27.3937,0	1/1:50:0,50:0:0:50:1773:-159.851,-15.0515,0	0/1:22:3,19:3:108:19:684:-55.2677,0,-3.45251	1/1:143:0,143:0:0:143:5136:-462.38,-43.0473,0	0/1:42:20,22:20:705:22:788:-58.6015,0,-51.1295	1/1:166:0,166:0:0:166:5888:-530.025,-49.971,0	0/1:52:13,39:13:468:39:1404:-111.006,0,-26.8061	0/1:92:37,55:37:1328:55:1955:-148.53,0,-92.1275	0/1:65:25,40:25:900:40:1440:-110.331,0,-61.7541	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:100:28,72:28:1004:72:2580:-202.346,0,-60.5729	1/1:97:0,97:0:0:97:3480:-313.405,-29.1999,0	1/1:248:0,248:0:0:248:8908:-801.699,-74.6554,0	0/1:57:19,38:19:684:38:1364:-105.902,0,-44.7316	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	1/1:55:0,55:0:0:55:1969:-177.484,-16.5567,0	1/1:100:0,100:0:0:100:3567:-321.238,-30.103,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6107	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2127	0/1:24:7,17:7:252:17:612:-48.1887,0,-15.8042	0/1:32:7,25:7:252:25:900:-71.6881,0,-13.396	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	1/1:144:0,144:0:0:144:5145:-463.18,-43.3483,0	1/1:77:0,77:0:0:77:2743:-247.091,-23.1793,0
chr11	26829749	.	TGGC	TGGA,CGGA	122823	PASS	AB=0.506227,0.489011;ABP=3.9298,5.87378;AC=141,47;AF=0.75,0.25;AN=188;AO=4322,1358;CIGAR=3M1X,1X2M1X;DP=5708;DPB=5708;DPRA=61.3656,1.01148;EPP=9258.28,2908.6;EPPR=7.35324;GTI=1;LEN=1,4;MEANALT=1.75269,2.22917;MQM=59.9947,59.9404;MQMR=60;NS=94;NUMALT=2;ODDS=0.179881;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=154489,47654;QR=66;RO=2;RPL=4307,1353;RPP=9258.28,2908.6;RPPR=7.35324;RPR=15,5;RUN=1,1;SAF=0,0;SAP=9388.11,2951.87;SAR=4322,1358;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22,0:0:0:22,0:783,0:-70.7929,-6.62266,0,-70.7929,-6.62266,-70.7929	1/1:89:0,89,0:0:0:89,0:3178,0:-286.243,-26.7917,0,-286.243,-26.7917,-286.243	1/2:77:0,47,29:0:0:47,29:1684,1017:-220.095,-82.7504,-68.602,-137.339,0,-128.609	1/2:191:0,76,112:0:0:76,112:2724,3929:-541.926,-319.756,-296.878,-222.187,0,-188.472	1/2:54:0,25,29:0:0:25,29:900,1004:-155.377,-81.935,-74.4093,-73.7953,0,-65.0654	1/2:41:0,21,20:0:0:21,20:748,700:-118.273,-57.3019,-50.9803,-61.3237,0,-55.3031	1/1:104:0,104,0:0:0:104,0:3728,0:-335.721,-31.3071,0,-335.721,-31.3071,-335.721	1/1:97:0,97,0:0:0:97,0:3446,0:-310.352,-29.1999,0,-310.352,-29.1999,-310.352	1/2:33:0,16,17:0:0:16,17:576,587:-95.0427,-48.0369,-43.2204,-47.3585,0,-42.241	1/1:46:0,45,1:0:0:45,1:1608,36:-144.65,-13.5464,0,-141.713,-10.2491,-141.412	1/1:71:0,69,0:0:0:69,0:2484,0:-223.453,-20.7711,0,-223.453,-20.7711,-223.453	1/2:60:0,30,30:0:0:30,30:1053,1025:-169.226,-83.5239,-74.493,-86.0485,0,-77.0176	1/2:67:0,37,30:0:0:37,30:1320,1065:-194.739,-87.1311,-75.993,-107.964,0,-98.9329	1/1:71:0,71,0:0:0:71,0:2548,0:-229.57,-21.3731,0,-229.57,-21.3731,-229.57	1/2:55:0,24,31:0:0:24,31:860,1098:-159.938,-89.7973,-82.5726,-70.4971,0,-61.1652	1/1:55:0,55,0:0:0:55,0:1957,0:-176.404,-16.5567,0,-176.404,-16.5567,-176.404	1/2:51:0,29,22:0:0:29,22:1031,765:-146.568,-62.5461,-53.8163,-84.3727,0,-77.7501	1/2:46:0,26,20:0:0:26,20:927,706:-133.411,-57.8445,-50.0177,-75.9206,0,-69.9	1/1:45:0,45,0:0:0:45,0:1612,0:-145.37,-13.5464,0,-145.37,-13.5464,-145.37	1/2:109:0,41,68:0:0:41,68:1471,2366:-312.716,-192.727,-180.385,-120.344,0,-99.8737	1/1:66:0,66,0:0:0:66,0:2364,0:-213.018,-19.868,0,-213.018,-19.868,-213.018	2/2:20:0,1,19:0:0:1,19:36,666:-59.9054,-56.9675,-56.6664,-5.71957,-2.42233,0	1/2:43:0,21,22:0:0:21,22:745,773:-123.968,-63.269,-56.9473,-61.0518,0,-54.4291	1/1:36:0,36,0:0:0:36,0:1296,0:-116.944,-10.8371,0,-116.944,-10.8371,-116.944	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9144,-8.72987,0,-93.9144,-8.72987,-93.9144	1/2:151:0,80,71:0:0:80,71:2841,2497:-435.079,-203.588,-179.505,-231.845,0,-210.472	1/1:125:0,125,0:0:0:125,0:4470,0:-402.469,-37.6288,0,-402.469,-37.6288,-402.469	1/2:35:0,22,13:0:0:22,13:782,460:-101.548,-37.822,-31.1993,-64.0806,0,-60.1672	1/1:217:1,216,0:1:30:216,0:7743,0:-693.901,-62.3239,0,-694.202,-65.0225,-696.6	1/2:39:0,16,23:0:0:16,23:572,801:-112.127,-65.4837,-60.6672,-46.9969,0,-40.0733	1/1:50:0,50,0:0:0:50,0:1789,0:-161.291,-15.0515,0,-161.291,-15.0515,-161.291	1/2:4:0,3,1:0:0:3,1:108,30:-11.5557,-2.69854,-1.79545,-9.17208,0,-8.87105	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:16:0,16,0:0:0:16,0:563,0:-50.9992,-4.81648,0,-50.9992,-4.81648,-50.9992	1/2:166:1,70,94:1:36:70,94:2502,3318:-470.978,-267.275,-249.141,-201.091,0,-175.732	1/2:89:0,47,42:0:0:47,42:1688,1472:-257.832,-120.128,-105.98,-138.059,0,-125.415	1/1:69:0,69,0:0:0:69,0:2467,0:-222.283,-20.7711,0,-222.283,-20.7711,-222.283	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:92:0,51,41:0:0:51,41:1819,1421:-264.129,-115.842,-100.489,-148.638,0,-136.296	1/1:47:0,46,0:0:0:46,0:1642,0:-147.787,-13.8474,0,-147.787,-13.8474,-147.787	1/1:49:0,49,0:0:0:49,0:1747,0:-157.509,-14.7505,0,-157.509,-14.7505,-157.509	1/1:66:0,65,0:0:0:65,0:2327,0:-209.418,-19.567,0,-209.418,-19.567,-209.418	1/1:45:0,44,1:0:0:44,1:1580,29:-142.2,-13.2453,0,-139.893,-10.6467,-139.592	1/2:36:0,17,19:0:0:17,19:595,671:-103.405,-54.997,-49.8795,-48.7592,0,-43.0396	1/2:87:0,40,47:0:0:40,47:1427,1653:-251.236,-134.905,-122.864,-116.686,0,-102.537	1/1:113:0,113,0:0:0:113,0:4039,0:-363.698,-34.0164,0,-363.698,-34.0164,-363.698	1/1:55:0,54,0:0:0:54,0:1940,0:-174.624,-16.2556,0,-174.624,-16.2556,-174.624	1/2:135:0,73,61:0:0:73,61:2622,2150:-388.941,-175.045,-153.07,-213.892,0,-195.529	1/1:62:0,59,0:0:0:59,0:2116,0:-190.384,-17.7608,0,-190.384,-17.7608,-190.384	1/1:7:0,6,0:0:0:6,0:212,0:-19.1943,-1.80618,0,-19.1943,-1.80618,-19.1943	1/1:90:0,88,0:0:0:88,0:3142,0:-282.7,-26.4906,0,-282.7,-26.4906,-282.7	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:7:0,3,4:0:0:3,4:108,143:-20.8306,-12.0173,-11.1142,-9.17208,0,-7.96796	1/1:98:0,98,0:0:0:98,0:3511,0:-316.199,-29.5009,0,-316.199,-29.5009,-316.199	1/2:10:0,8,2:0:0:8,2:271,69:-27.9182,-5.9506,-3.54236,-22.3112,0,-21.7091	1/1:4:0,4,0:0:0:4,0:144,0:-1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chr11	26837349	.	C	T	16458.4	PASS	AB=0.443449;ABP=68.0942;AC=42;AF=0.225806;AN=186;AO=1043;CIGAR=1X;DP=5107;DPB=5107;DPRA=1.09333;EPP=2267.86;EPPR=8784.48;GTI=1;LEN=1;MEANALT=1.04545;MQM=59.9885;MQMR=59.9852;NS=93;NUMALT=1;ODDS=4.71899;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37267;QR=145129;RO=4060;RPL=0;RPP=2267.86;RPPR=8784.48;RPR=1043;RUN=1;SAF=1043;SAP=2267.86;SAR=0;SRF=4060;SRP=8819.19;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/1:84:52,32:52:1872:32:1152:-78.7036,0,-143.473	0/1:162:97,65:97:3467:65:2328:-161.013,0,-263.475	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:55:24,31:24:856:31:1086:-81.4884,0,-60.8045	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:57:26,31:26:928:31:1112:-83.2326,0,-66.6795	0/1:60:25,35:25:896:35:1251:-94.8324,0,-62.8986	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:27:13,14:13:464:14:500:-37.2084,0,-33.9697	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:11:2,9:2:72:9:320:-25.831,0,-3.52539	0/1:9:1,8:1:36:8:277:-22.5552,0,-0.889005	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:84:52,32:52:1860:32:1137:-77.3504,0,-142.393	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/1:50:19,31:19:684:31:1116:-85.7002,0,-46.4671	0/1:62:37,25:37:1309:25:896:-62.2965,0,-99.4457	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:138:91,47:91:3264:47:1665:-108.593,0,-252.438	0/0:154:154,0:154:5492:0:0:0,-46.3586,-494.41	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:152:152,0:152:5411:0:0:0,-45.7566,-487.121	0/1:52:29,23:29:1044:23:814:-57.9275,0,-78.6212	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:99:46,53:46:1648:53:1900:-141.476,0,-118.807	0/1:79:44,35:44:1584:35:1236:-87.761,0,-119.07	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:100:69,31:69:2464:31:1116:-70.6487,0,-191.911	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:92:40,52:40:1421:52:1860:-139.985,0,-100.491	0/1:80:57,23:57:2028:23:813:-49.4067,0,-158.71	0/0:180:180,0:180:6437:0:0:0,-54.1854,-579.414	0/0:77:77,0:77:2733:0:0:0,-23.1793,-246.212	0/1:57:30,27:30:1067:27:972:-70.6392,0,-79.1825	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:127:126,0:126:4495:0:0:0,-37.9298,-404.36	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:143:143,0:143:5128:0:0:0,-43.0473,-461.661	0/1:20:8,12:8:284:12:428:-32.8382,0,-19.8828	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:32:23,9:23:816:9:320:-19.5094,0,-64.1288	0/1:62:31,31:31:1108:31:1116:-82.0878,0,-81.26	.:.:.:.:.:.:.:.	0/1:149:89,60:89:3181:60:2141:-148.102,0,-241.659	0/0:119:116,2:116:4143:2:68:0,-29.417,-366.587	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/1:73:43,30:43:1525:30:1080:-75.5381,0,-115.566	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.048	0/0:111:111,0:111:3968:0:0:0,-33.4143,-357.312	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:33:32,0:32:1148:0:0:0,-9.63296,-103.27	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/1:74:43,31:43:1536:31:1116:-78.4755,0,-116.257	0/0:86:86,0:86:3045:0:0:0,-25.8886,-274.278	0/1:83:48,35:48:1716:35:1256:-88.3598,0,-129.74	0/1:30:19,11:19:684:11:396:-26.9518,0,-52.8594	0/1:49:30,19:30:1076:19:680:-46.7783,0,-82.4024	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:89:52,37:52:1832:37:1311:-91.4984,0,-138.366	0/0:68:66,2:66:2361:2:72:0,-13.6333,-205.91	0/0:109:109,0:109:3896:0:0:0,-32.8123,-350.835	0/1:45:26,19:26:927:19:676:-47.6216,0,-70.201	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:44:21,22:21:748:22:792:-58.3016,0,-54.3413	0/1:40:22,18:22:788:18:648:-46.6107,0,-59.2036	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	0/1:40:23,17:23:824:17:612:-43.3722,0,-62.4421	0/1:40:16,24:16:568:24:848:-64.5985,0,-39.4107	0/0:139:139,0:139:4975:0:0:0,-41.8432,-447.898	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508
chr11	26841361	.	CTG	ATA,CTA	165963	PASS	AB=0.484174,0.514753;ABP=11.1207,10.0583;AC=143,45;AF=0.760638,0.239362;AN=188;AO=6085,1925;CIGAR=1X1M1X,2M1X;DP=8024;DPB=8024;DPRA=0,1.08142;EPP=13216.4,4183.09;EPPR=0;GTI=0;LEN=3,1;MEANALT=1.67021,2.12;MQM=59.5162,59.9849;MQMR=0;NS=94;NUMALT=2;ODDS=3.22592;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=209678,68392;QR=0;RO=0;RPL=0,0;RPP=13216.4,4183.09;RPPR=0;RPR=6085,1925;RUN=1,1;SAF=6085,1925;SAP=13216.4,4183.09;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:60:0,58,0:0:0:58,0:2006,0:-180.415,-17.4597,0,-180.415,-17.4597,-180.415	1/1:61:0,61,0:0:0:61,0:2092,0:-188.531,-18.3628,0,-188.531,-18.3628,-188.531	1/2:128:0,71,57:0:0:71,57:2448,2028:-364.464,-165.634,-144.261,-199.18,0,-182.022	1/2:156:0,75,81:0:0:75,81:2590,2877:-445.108,-234.783,-212.206,-210.675,0,-186.291	1/2:59:0,28,31:0:0:28,31:947,1104:-167.057,-90.3387,-81.9099,-77.0645,0,-67.7326	1/2:61:0,25,36:0:0:25,36:863,1253:-172.308,-102.195,-94.6696,-70.4593,0,-59.6222	1/1:135:0,135,0:0:0:135,0:4541,0:-407.407,-40.6391,0,-407.407,-40.6391,-407.407	1/1:118:0,117,0:0:0:117,0:3944,0:-354.781,-35.2205,0,-354.781,-35.2205,-354.781	1/2:109:0,45,64:0:0:45,64:1545,2260:-309.737,-184.398,-170.852,-125.686,0,-106.42	1/1:75:0,74,1:0:0:74,1:2523,36:-226.912,-22.2762,0,-223.974,-18.979,-223.673	1/1:22:0,22,0:0:0:22,0:772,0:-69.6344,-6.62266,0,-69.6344,-6.62266,-69.6344	1/2:67:0,36,31:0:0:36,31:1268,1096:-192.851,-89.618,-78.7809,-103.586,0,-94.2542	1/2:53:0,35,18:0:0:35,18:1222,648:-152.605,-53.2333,-42.6973,-99.7279,0,-94.3093	1/1:65:0,65,0:0:0:65,0:2233,0:-201.218,-19.567,0,-201.218,-19.567,-201.218	1/2:58:0,26,31:0:0:26,31:909,1112:-164.633,-90.7165,-82.8898,-73.9274,0,-64.5954	1/1:43:0,43,0:0:0:43,0:1507,0:-135.878,-12.9443,0,-135.878,-12.9443,-135.878	1/2:18:0,10,8:0:0:10,8:355,288:-52.7819,-23.8592,-20.8489,-29.2804,0,-26.8721	1/2:20:0,11,9:0:0:11,9:380,324:-57.635,-26.7966,-23.4853,-31.1916,0,-28.4823	1/1:13:0,13,0:0:0:13,0:456,0:-41.3669,-3.91339,0,-41.3669,-3.91339,-41.3669	1/2:188:0,85,103:0:0:85,103:2967,3650:-538.939,-297.696,-272.109,-241.594,0,-210.588	1/1:155:0,154,0:0:0:154,0:5204,0:-468.038,-46.3586,0,-468.038,-46.3586,-468.038	1/2:143:0,48,95:0:0:48,95:1669,3376:-411.156,-275.46,-261.011,-136.046,0,-107.448	1/2:105:0,49,56:0:0:49,56:1664,1980:-296.557,-161.617,-146.867,-135.285,0,-118.428	1/1:87:0,87,0:0:0:87,0:3015,0:-271.515,-26.1896,0,-271.515,-26.1896,-271.515	1/1:70:0,70,0:0:0:70,0:2399,0:-215.943,-21.0721,0,-215.943,-21.0721,-215.943	1/2:226:0,101,125:0:0:101,125:3471,4441:-644.081,-362.234,-331.83,-282.196,0,-244.567	1/1:210:0,210,0:0:0:210,0:7278,0:-655.014,-63.2163,0,-655.014,-63.2163,-655.014	1/2:16:0,10,6:0:0:10,6:354,208:-46.0899,-17.2529,-14.2426,-29.1862,0,-27.38	1/1:201:0,200,0:0:0:200,0:6882,0:-618.969,-60.206,0,-618.969,-60.206,-618.969	1/2:110:0,53,57:0:0:53,57:1817,2032:-313.469,-165.994,-150.039,-147.824,0,-130.666	1/1:101:0,101,0:0:0:101,0:3442,0:-309.893,-30.404,0,-309.893,-30.404,-309.893	1/2:9:0,4,5:0:0:4,5:144,180:-26.7966,-15.0469,-13.8428,-12.1095,0,-10.6043	1/1:16:0,16,0:0:0:16,0:555,0:-50.2765,-4.81648,0,-50.2765,-4.81648,-50.2765	1/1:7:0,7,0:0:0:7,0:248,0:-22.6644,-2.10721,0,-22.6644,-2.10721,-22.6644	1/1:3:0,3,0:0:0:3,0:108,0:-9.74653,-0.90309,0,-9.74653,-0.90309,-9.74653	1/1:18:0,18,0:0:0:18,0:615,0:-55.652,-5.41854,0,-55.652,-5.41854,-55.652	1/2:120:0,65,55:0:0:65,55:2248,1964:-343.132,-160.479,-140.912,-183.006,0,-166.449	1/2:101:0,51,50:0:0:51,50:1732,1776:-285.159,-145.072,-129.719,-140.435,0,-125.383	1/1:36:0,36,0:0:0:36,0:1262,0:-113.882,-10.8371,0,-113.882,-10.8371,-113.882	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:135:0,67,67:0:0:67,67:2307,2388:-381.903,-194.649,-174.48,-187.244,0,-167.075	1/1:23:0,23,0:0:0:23,0:808,0:-73.0043,-6.92369,0,-73.0043,-6.92369,-73.0043	1/1:221:0,219,1:0:0:219,1:7568,36:-680.596,-65.9256,0,-677.659,-62.9834,-677.358	1/1:44:0,44,0:0:0:44,0:1559,0:-140.524,-13.2453,0,-140.524,-13.2453,-140.524	1/1:45:0,45,0:0:0:45,0:1545,0:-138.926,-13.5464,0,-138.926,-13.5464,-138.926	1/2:154:0,79,75:0:0:79,75:2716,2664:-437.984,-217.43,-193.648,-220.904,0,-198.327	1/2:137:0,78,59:0:0:78,59:2712,2104:-392.294,-171.869,-148.388,-220.777,0,-203.017	1/1:148:0,147,0:0:0:147,0:5070,0:-456.075,-44.2514,0,-456.075,-44.2514,-456.075	1/1:111:0,111,0:0:0:111,0:3837,0:-345.532,-33.4143,0,-345.532,-33.4143,-345.532	1/2:94:0,34,60:0:0:34,60:1182,2124:-269.464,-173.367,-163.132,-96.4461,0,-78.3843	1/1:186:0,185,0:0:0:185,0:6384,0:-574.334,-55.6906,0,-574.334,-55.6906,-574.334	1/1:8:0,8,0:0:0:8,0:281,0:-25.6306,-2.40824,0,-25.6306,-2.40824,-25.6306	1/1:119:0,118,0:0:0:118,0:4091,0:-368.083,-35.5215,0,-368.083,-35.5215,-368.083	1/1:99:0,99,0:0:0:99,0:3450,0:-310.693,-29.802,0,-310.693,-29.802,-310.693	1/2:35:0,17,18:0:0:17,18:596,648:-101.728,-53.2333,-48.1158,-48.85,0,-43.4314	1/1:121:0,121,0:0:0:121,0:4128,0:-371.697,-36.4246,0,-371.697,-36.4246,-371.697	1/2:41:0,19,22:0:0:19,22:648,792:-117.55,-64.983,-59.2634,-52.9163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chr11	26875783	.	G	A	46190.5	PASS	AB=0.499908;ABP=3.0107;AC=46;AF=0.244681;AN=188;AO=2738;CIGAR=1X;DP=10912;DPB=10912;DPRA=1.31403;EPP=5948.5;EPPR=17730.9;GTI=1;LEN=1;MEANALT=1.03922;MQM=59.9624;MQMR=59.9863;NS=94;NUMALT=1;ODDS=0.784163;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98054;QR=290881;RO=8168;RPL=2738;RPP=5948.5;RPPR=17739.6;RPR=0;RUN=1;SAF=0;SAP=5948.5;SAR=2738;SRF=1;SRP=17730.9;SRR=8167;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:72:70,2:70:2488:2:72:0,-14.8374,-217.337	0/0:72:72,0:72:2540:0:0:0,-21.6742,-228.853	0/1:231:128,103:128:4523:103:3668:-260.785,0,-337.7	0/1:396:187,209:187:6660:209:7447:-550.785,0,-480.256	0/1:73:30,43:30:1080:43:1544:-117.278,0,-75.5381	0/1:52:23,29:23:815:29:1044:-78.6212,0,-58.009	0/0:127:124,3:124:4403:3:108:0,-28.1556,-386.333	0/0:181:180,1:180:6416:1:36:0,-50.8882,-573.933	0/1:146:71,75:71:2518:75:2688:-198.214,0,-182.921	0/0:91:91,0:91:3227:0:0:0,-27.3937,-290.654	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:96:45,51:45:1572:51:1836:-136.621,0,-112.869	0/1:79:41,38:41:1463:38:1368:-99.6361,0,-108.184	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:57:26,31:26:936:31:1112:-83.2326,0,-67.4008	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.366	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/1:30:17,13:17:600:13:468:-33.4287,0,-45.2983	0/0:23:23,0:23:807:0:0:0,-6.92369,-72.9492	0/1:224:114,110:114:4072:110:3952:-288.437,0,-299.237	0/0:194:194,0:194:6862:0:0:0,-58.3998,-617.659	0/1:184:55,129:55:1948:129:4609:-359.583,0,-120.207	0/1:210:106,104:106:3788:104:3725:-272.231,0,-277.903	0/0:83:82,0:82:2907:0:0:0,-24.6845,-261.507	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/1:330:171,159:171:6066:159:5685:-412.41,0,-446.706	0/0:215:215,0:215:7688:0:0:0,-64.7214,-691.956	0/1:23:12,11:12:432:11:388:-28.3337,0,-32.2975	0/0:411:407,2:407:14516:2:72:0,-116.644,-1299.36	0/1:231:100,131:100:3568:131:4696:-353.262,0,-251.791	0/0:148:148,0:148:5256:0:0:0,-44.5524,-473.182	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:161:84,77:84:2995:77:2768:-200.895,0,-221.316	0/1:187:95,92:95:3375:92:3308:-241.645,0,-247.675	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/1:290:173,117:173:6168:117:4189:-289.891,0,-467.921	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:316:315,0:315:11222:0:0:0,-94.8244,-1009.66	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.885	0/0:53:53,0:53:1887:0:0:0,-15.9546,-170.108	0/1:108:66,41:66:2364:41:1468:-99.9924,0,-180.596	0/1:211:106,105:106:3788:105:3770:-275.981,0,-277.594	0/0:256:256,0:256:9120:0:0:0,-77.0637,-820.779	0/0:91:91,0:91:3232:0:0:0,-27.3937,-291.104	0/1:144:74,70:74:2648:70:2508:-182.623,0,-195.218	0/0:167:167,0:167:5944:0:0:0,-50.272,-535.072	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:199:199,0:199:7104:0:0:0,-59.905,-639.416	0/0:140:140,0:140:4943:0:0:0,-42.1442,-445.025	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:177:177,0:177:6311:0:0:0,-53.2823,-568.085	0/1:86:41,45:41:1464:45:1604:-118.762,0,-106.167	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:110:54,56:54:1923:56:2003:-147.43,0,-140.233	0/1:89:41,48:41:1450:48:1715:-127.843,0,-104.003	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:278:154,124:154:5492:124:4425:-314.735,0,-410.723	0/0:231:225,6:225:8032:6:216:0,-49.7474,-703.085	0/1:42:33,9:33:1176:9:324:-16.8626,0,-93.5045	0/1:120:64,56:64:2292:56:2000:-144.15,0,-170.418	0/0:262:262,0:262:9334:0:0:0,-78.8699,-840.031	0/0:185:183,2:183:6536:2:72:0,-48.8538,-581.488	0/1:25:13,12:13:460:12:424:-30.9707,0,-34.2096	0/0:88:88,0:88:3103:0:0:0,-26.4906,-279.5	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:12:10,2:10:348:2:72:-3.22436,0,-28.0428	0/0:177:177,0:177:6315:0:0:0,-53.2823,-568.444	0/1:129:66,63:66:2336:63:2264:-165.189,0,-171.668	0/0:208:208,0:208:7400:0:0:0,-62.6142,-666.053	0/1:220:99,121:99:3540:121:4348:-325.231,0,-252.578	0/1:203:107,96:107:3832:96:3442:-248.884,0,-283.967	0/1:129:67,62:67:2383:62:2209:-160.24,0,-175.895	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/1:142:67,75:67:2373:75:2692:-199.778,0,-171.081	0/0:179:179,0:179:6404:0:0:0,-53.8844,-576.447	0/0:202:202,0:202:7171:0:0:0,-60.8081,-645.447	0/1:50:24,26:24:864:26:936:-69.508,0,-63.0311	0/0:80:80,0:80:2847:0:0:0,-24.0824,-256.468	0/0:43:43,0:43:1526:0:0:0,-12.9443,-137.632	0/0:114:114,0:114:4049:0:0:0,-34.3174,-364.599	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:76:34,42:34:1203:42:1503:-112.683,0,-85.6968	0/1:63:37,26:37:1319:26:932:-65.234,0,-100.046	0/1:29:15,14:15:532:14:504:-36.9682,0,-39.4832	0/1:55:25,30:25:892:30:1080:-80.9566,0,-64.043	0/1:56:18,38:18:648:38:1356:-105.483,0,-41.7942	0/0:175:174,0:174:6228:0:0:0,-52.3792,-560.405	0/0:76:76,0:76:2711:0:0:0,-22.8783,-244.234
chr11	26899166	.	TTCAT	TTCAC	51473.6	PASS	AB=0.444607;ABP=57.6193;AC=135;AF=0.741758;AN=182;AO=2541;CIGAR=4M1X;DP=3783;DPB=3783;DPRA=42.0222;EPP=5460.09;EPPR=2486.05;GTI=3;LEN=1;MEANALT=1.51111;MQM=59.9473;MQMR=59.9899;NS=91;NUMALT=1;ODDS=1.18264;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90141;QR=40322;RO=1191;RPL=2534;RPP=5460.09;RPPR=2494.57;RPR=7;RUN=1;SAF=2541;SAP=5520.72;SAR=0;SRF=1190;SRP=2580.56;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,11:0:0:11:392:-35.3612,-3.31133,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:34:22,12:22:761:12:432:-28.9815,0,-58.5727	0/1:112:51,58:51:1736:58:2063:-152.851,0,-123.429	0/1:34:27,7:27:901:7:252:-12.7939,0,-71.1597	0/1:21:13,8:13:455:8:284:-19.5817,0,-34.9607	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	1/1:46:0,45:0:0:45:1582:-142.387,-13.5464,0	0/1:46:21,24:21:720:24:843:-62.3876,0,-51.3149	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	0/1:57:33,22:33:1144:22:779:-53.6213,0,-86.4564	0/1:43:16,27:16:550:27:963:-74.0416,0,-36.8782	1/1:26:0,24:0:0:24:847:-76.2586,-7.22472,0	0/1:36:20,16:20:677:16:563:-40.1621,0,-50.409	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:25:11,14:11:371:14:481:-36.0893,0,-26.1897	0/1:18:10,8:10:306:8:288:-20.8489,0,-22.4199	1/1:19:0,18:0:0:18:616:-55.5031,-5.41854,0	0/1:55:38,17:38:1284:17:581:-36.0532,0,-99.2979	1/1:65:0,63:0:0:63:2256:-203.016,-18.9649,0	0/0:73:67,6:67:2288:6:216:0,-2.18468,-186.387	0/1:28:13,15:13:444:15:540:-40.5077,0,-31.8569	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:14:0,13:0:0:13:468:-42.1647,-3.91339,0	0/1:109:58,51:58:1981:51:1815:-130.818,0,-145.751	1/1:76:0,74:0:0:74:2651:-238.539,-22.2762,0	0/1:17:10,7:10:341:7:252:-17.9114,0,-25.9007	1/1:70:0,69:0:0:69:2444:-219.973,-20.7711,0	0/1:41:26,15:26:893:15:536:-36.2326,0,-68.3388	1/1:32:0,29:0:0:29:1036:-93.2456,-8.72987,0	0/1:7:6,1:6:191:1:36:-1.49107,0,-15.3956	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:97:37,60:37:1274:60:2113:-161.236,0,-85.7596	0/1:67:52,14:52:1749:14:504:-25.5822,0,-137.575	1/1:18:0,18:0:0:18:635:-57.477,-5.41854,0	.:.:.:.:.:.:.:.	0/1:40:25,15:25:855:15:518:-34.9043,0,-65.2186	1/1:8:0,7:0:0:7:226:-20.31,-2.10721,0	1/1:29:0,29:0:0:29:1017:-91.8396,-8.72987,0	1/1:38:0,37:0:0:37:1300:-117.026,-11.1381,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	0/1:59:32,26:32:1061:26:917:-65.1103,0,-78.0529	0/1:57:46,11:46:1561:11:392:-18.4613,0,-123.617	1/1:77:0,77:0:0:77:2744:-247.203,-23.1793,0	1/1:41:0,40:0:0:40:1436:-129.324,-12.0412,0	0/1:56:31,25:31:1023:25:892:-63.6556,0,-75.5074	1/1:40:0,39:0:0:39:1392:-125.258,-11.7402,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:17:0,17:0:0:17:596:-53.9641,-5.11751,0	0/1:9:5,4:5:178:4:129:-9.21839,0,-13.6594	1/1:65:0,63:0:0:63:2214:-199.102,-18.9649,0	0/1:5:1,4:1:26:4:144:-11.8085,0,-1.09468	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:41:18,23:18:626:23:811:-60.9677,0,-44.3215	0/1:62:30,32:30:993:32:1148:-84.966,0,-71.0046	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:128:69,56:69:2345:56:1999:-142.312,0,-173.439	1/1:74:2,71:2:64:71:2531:-221.985,-16.1701,0	0/1:34:15,18:15:522:18:640:-47.7303,0,-37.109	0/1:28:13,14:13:421:14:504:-37.285,0,-29.7903	1/1:59:0,58:0:0:58:2048:-184.338,-17.4597,0	1/1:57:0,56:0:0:56:1984:-178.619,-16.8577,0	0/1:12:3,9:3:98:9:320:-25.53,0,-5.53121	1/1:11:0,9:0:0:9:320:-28.8568,-2.70927,0	1/1:43:0,43:0:0:43:1513:-136.462,-12.9443,0	0/1:13:3,10:3:98:10:360:-28.8309,0,-5.23065	1/1:69:0,68:0:0:68:2415:-217.384,-20.47,0	0/1:45:15,30:15:516:30:1059:-82.0741,0,-33.2191	1/1:78:2,75:2:67:75:2670:-233.984,-17.168,0	0/1:83:37,45:37:1234:45:1599:-119.263,0,-86.4172	0/1:38:31,6:31:1047:6:216:-8.42957,0,-83.1897	0/1:56:33,22:33:1169:22:758:-51.7254,0,-88.7077	0/1:19:11,8:11:370:8:281:-19.9103,0,-27.9025	0/1:46:29,17:29:994:17:612:-41.5661,0,-75.9198	1/1:29:0,26:0:0:26:918:-82.594,-7.82678,0	1/1:44:0,44:0:0:44:1553:-139.9,-13.2453,0	0/1:45:28,17:28:977:17:612:-41.8671,0,-74.6955	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:28:0,28:0:0:28:985:-88.9615,-8.42884,0	1/1:70:0,69:0:0:69:2435:-219.152,-20.7711,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:38:22,16:22:739:16:568:-40.0122,0,-55.3835	0/1:27:8,18:8:268:18:644:-50.2461,0,-16.3951	0/1:25:9,15:9:320:15:532:-40.7506,0,-21.6754	0/1:61:23,38:23:773:38:1319:-100.643,0,-51.5178	0/1:175:118,56:118:3875:56:1984:-126.221,0,-296.356	1/1:79:0,78:0:0:78:2784:-250.55,-23.4803,0	1/1:50:0,50:0:0:50:1773:-159.851,-15.0515,0
chr11	26900654	.	ATTCA	TTTCG,TTTCA	1.15587e+06	PASS	AB=0.505064,0.490609;ABP=7.38718,18.0594;AC=143,45;AF=0.760638,0.239362;AN=188;AO=43562,9681;CIGAR=1X3M1X,1X4M;DP=53485;DPB=53492.6;DPRA=0,2.03716;EPP=93929.1,20860.3;EPPR=18.2106;GTI=1;LEN=5,1;MEANALT=3.53191,4.31148;MQM=59.7981,59.9916;MQMR=58.7143;NS=94;NUMALT=2;ODDS=11.0861;PAIRED=0,0;PAIREDR=0;PAO=16,16;PQA=472.5,472.5;PQR=0;PRO=0;QA=1535882,346611;QR=207;RO=7;RPL=43485,9662;RPP=93929.1,20860.3;RPPR=18.2106;RPR=77,19;RUN=1,1;SAF=43562,9681;SAP=94596.7,21025;SAR=0,0;SRF=7;SRP=18.2106;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:78:0,77,0:0:0:77,0:2735,0:-246.104,-23.1793,0,-246.104,-23.1793,-246.104	1/1:368:0,368,0:0:0:368,0:12990,0:-1168.75,-110.779,0,-1168.75,-110.779,-1168.75	1/2:302:0,156,146:0:0:156,146:5454,5208:-867.934,-424.911,-377.95,-443.377,0,-399.426	1/2:385:0,219,162:0:0:219,162:7716,5805:-1101.68,-473.492,-407.567,-628.237,0,-579.471	1/2:160:0,75,83:0:0:75,83:2651,2988:-459.71,-243.806,-221.229,-215.901,0,-190.915	1/2:74:0,36,38:0:0:36,38:1249,1360:-212.781,-111.261,-100.424,-101.872,0,-90.4326	1/1:305:0,303,1:0:0:303,1:10671,36:-959.952,-91.2121,0,-957.014,-88.2447,-956.713	1/1:254:0,249,2:0:0:249,2:8733,72:-785.628,-74.9565,0,-779.753,-69.0614,-779.151	1/2:189:0,104,83:0:0:104,83:3651,2969:-539.263,-242.13,-210.823,-297.162,0,-272.177	1/1:110:0,109,0:0:0:109,0:3840,0:-345.439,-32.8123,0,-345.439,-32.8123,-345.439	1/1:455:0,454,0:0:0:454,0:15927,0:-1432.69,-136.668,0,-1432.69,-136.668,-1432.69	1/2:61:0,31,30:0:0:31,30:1096,1080:-177.743,-88.4823,-79.1504,-89.6168,0,-80.5859	1/2:56:0,27,28:0:0:27,28:953,1004:-159.489,-81.8872,-73.7594,-77.5976,0,-69.1687	1/1:92:0,92,0:0:0:92,0:3222,0:-290.202,-27.6948,0,-290.202,-27.6948,-290.202	1/2:67:0,38,29:0:0:38,29:1353,1040:-195.459,-85.1845,-73.7454,-110.632,0,-101.902	1/1:56:0,56,0:0:0:56,0:1988,0:-179.195,-16.8577,0,-179.195,-16.8577,-179.195	1/2:72:0,42,30:0:0:42,30:1488,1055:-207.445,-86.2286,-73.5854,-121.569,0,-112.538	1/2:44:0,22,22:0:0:22,22:782,792:-128.647,-64.9256,-58.3029,-64.023,0,-57.4003	1/1:187:0,186,0:0:0:186,0:6588,0:-592.656,-55.9916,0,-592.656,-55.9916,-592.656	1/2:474:0,259,213:0:0:259,213:9159,7622:-1367.5,-621.616,-543.65,-745.955,0,-681.836	1/1:226:0,225,0:0:0:225,0:7891,0:-709.907,-67.7318,0,-709.907,-67.7318,-709.907	1/2:281:0,97,182:0:0:97,182:3408,6512:-808.437,-531.093,-501.893,-277.416,0,-222.628	1/2:206:0,101,105:0:0:101,105:3567,3768:-598.145,-307.71,-277.306,-290.79,0,-259.182	1/1:265:0,264,0:0:0:264,0:9256,0:-832.597,-79.4719,0,-832.597,-79.4719,-832.597	1/1:172:0,171,0:0:0:171,0:6032,0:-542.515,-51.4761,0,-542.515,-51.4761,-542.515	1/2:686:0,346,339:0:0:346,339:12249,12184:-1991.8,-994.04,-889.884,-997.834,0,-895.785	1/1:452:0,445,1:0:0:445,1:15722,36:-1414.34,-133.958,0,-1411.4,-131.012,-1411.1	1/2:18:0,10,8:0:0:10,8:352,288:-52.5109,-23.8592,-20.8489,-29.008,0,-26.5997	1/1:550:0,548,0:0:0:548,0:19357,0:-1741.36,-164.964,0,-1741.36,-164.964,-1741.36	1/2:352:0,156,196:0:0:156,196:5449,7035:-1017.44,-574.207,-527.246,-443.587,0,-384.585	1/1:250:0,248,0:0:0:248,0:8755,0:-787.434,-74.6554,0,-787.434,-74.6554,-787.434	1/2:1973:1,982,978:1:36:982,978:34626,35071:-5676.44,-2857.58,-2564.91,-2816.25,0,-2524.78	1/1:2503:0,2481,8:0:0:2481,8:87851,284:-7901.41,-746.855,0,-7878.27,-723.693,-7875.87	1/1:2869:0,2855,3:0:0:2855,3:100567,108:-9044.51,-859.441,0,-9035.7,-850.618,-9034.79	1/1:4489:0,4472,0:0:0:4472,0:157188,0:-14136.5,-1346.21,0,-14136.5,-1346.21,-14136.5	1/1:2823:0,2812,3:0:0:2812,3:99103,108:-8913.83,-846.496,0,-8905.02,-837.663,-8904.12	1/2:167:0,93,74:0:0:93,74:3288,2660:-485.154,-217.369,-189.373,-268.141,0,-245.865	1/2:323:1,161,161:1:36:161,161:5693,5733:-927.602,-464.263,-418.735,-460.638,0,-415.109	1/1:417:0,412,0:0:0:412,0:14534,0:-1307.48,-124.024,0,-1307.48,-124.024,-1307.48	1/1:2878:0,2860,2:0:0:2860,2:100827,72:-9068.38,-860.946,0,-9062.5,-855.067,-9061.9	1/2:318:0,170,145:0:0:170,145:6009,5198:-913.376,-423.985,-372.81,-489.424,0,-445.775	1/1:237:0,237,0:0:0:237,0:8393,0:-755.379,-71.3441,0,-755.379,-71.3441,-755.379	1/1:344:0,343,0:0:0:343,0:12030,0:-1082.22,-103.253,0,-1082.22,-103.253,-1082.22	1/1:60:0,59,0:0:0:59,0:2096,0:-188.592,-17.7608,0,-188.592,-17.7608,-188.592	1/1:55:0,54,0:0:0:54,0:1918,0:-172.597,-16.2556,0,-172.597,-16.2556,-172.597	1/2:204:0,113,90:0:0:113,90:3978,3228:-587.269,-263.427,-229.411,-323.975,0,-296.883	1/2:347:0,162,184:0:0:162,184:5731,6577:-1003.06,-536.271,-487.504,-466.789,0,-411.4	1/1:463:0,458,0:0:0:458,0:16082,0:-1446.73,-137.872,0,-1446.73,-137.872,-1446.73	1/1:276:0,276,0:0:0:276,0:9739,0:-876.473,-83.0843,0,-876.473,-83.0843,-876.473	1/2:290:0,125,164:0:0:125,164:4427,5874:-839.663,-479.041,-441.413,-360.618,0,-311.249	1/1:423:0,422,0:0:0:422,0:15000,0:-1349.32,-127.035,0,-1349.32,-127.035,-1349.32	1/1:3139:0,3121,2:0:0:3121,2:110272,72:-9918.89,-939.515,0,-9913.02,-933.637,-9912.41	1/1:361:0,359,0:0:0:359,0:12755,0:-1147.11,-108.07,0,-1147.11,-108.07,-1147.11	1/1:123:0,123,0:0:0:123,0:4326,0:-389.521,-37.0267,0,-389.52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chr11	26900668	.	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chr11	26921055	.	G	A	17261.9	PASS	AB=0.472997;ABP=17.0828;AC=46;AF=0.244681;AN=188;AO=1058;CIGAR=1X;DP=4589;DPB=4589;DPRA=1.04795;EPP=2257.2;EPPR=7666.14;GTI=2;LEN=1;MEANALT=1;MQM=59.0898;MQMR=46.9017;NS=94;NUMALT=1;ODDS=0.155464;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37763;QR=126094;RO=3529;RPL=5;RPP=2257.2;RPPR=7666.14;RPR=1053;RUN=1;SAF=1058;SAP=2300.43;SAR=0;SRF=3529;SRP=7666.14;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1144:0:0:0,-9.63296,-101.501	0/0:41:40,1:40:1409:1:36:0,-8.74395,-120.853	0/1:126:67,59:67:2388:59:2092:-150.268,0,-173.446	0/1:88:31,57:31:1104:57:2036:-157.009,0,-71.7053	0/1:26:18,8:18:635:8:284:-18.0762,0,-49.1887	0/1:27:10,17:10:352:17:608:-46.8791,0,-23.4946	0/0:48:48,0:48:1724:0:0:0,-14.4494,-153.429	0/0:76:76,0:76:2720:0:0:0,-22.8783,-241.485	0/1:51:39,12:39:1383:12:420:-22.2832,0,-106.889	0/0:61:61,0:61:2192:0:0:0,-18.3628,-195.762	0/0:46:46,0:46:1652:0:0:0,-13.8474,-147.693	0/1:66:35,31:35:1248:31:1112:-80.5188,0,-91.0533	0/1:32:20,12:20:716:12:424:-28.8635,0,-53.9211	0/0:32:31,1:31:1112:1:36:0,-6.50932,-96.3759	0/1:30:9,21:9:324:21:756:-59.3187,0,-20.2457	0/0:34:34,0:34:1211:0:0:0,-10.235,-107.501	0/1:27:15,12:15:536:12:423:-30.2763,0,-39.7968	0/1:19:14,5:14:504:5:180:-10.8325,0,-38.3165	0/0:30:30,0:30:1076:0:0:0,-9.0309,-95.193	0/1:117:54,63:54:1936:63:2257:-167.979,0,-137.344	0/0:44:44,0:44:1546:0:0:0,-13.2453,-138.315	0/1:41:24,17:24:856:17:597:-41.7054,0,-64.504	0/1:55:19,36:19:680:36:1276:-98.2953,0,-44.6367	0/0:33:33,0:33:1184:0:0:0,-9.93399,-105.087	0/0:93:93,0:93:3339:0:0:0,-27.9958,-294.787	0/1:123:67,56:67:2400:56:2000:-143.235,0,-177.086	0/0:152:152,0:152:5443:0:0:0,-45.7566,-484.058	0/1:18:9,9:9:324:9:320:-23.7238,0,-23.8293	0/0:99:98,1:98:3492:1:36:0,-26.2037,-307.938	0/1:46:25,21:25:900:21:747:-53.6703,0,-65.9786	0/0:29:29,0:29:1032:0:0:0,-8.72987,-92.7207	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.58443	0/1:14:12,2:12:428:2:72:-2.6223,0,-33.8992	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.74218	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.768	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.2512	0/1:140:79,61:79:2844:61:2171:-153.505,0,-211.517	0/1:43:33,10:33:1188:10:360:-19.7714,0,-93.0884	0/0:24:24,0:24:860:0:0:0,-7.22472,-76.6685	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.98707	0/1:45:22,23:22:788:23:824:-60.9246,0,-56.6883	0/0:23:23,0:23:816:0:0:0,-6.92369,-72.7571	0/0:90:90,0:90:3205:0:0:0,-27.0927,-284.927	0/0:47:47,0:47:1680:0:0:0,-14.1484,-150.63	0/0:45:45,0:45:1612:0:0:0,-13.5463,-144.561	0/1:52:31,21:31:1108:21:752:-51.9372,0,-83.723	0/1:52:32,20:32:1148:20:720:-49.4752,0,-86.6131	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.455	0/0:60:60,0:60:2152:0:0:0,-18.0618,-192.479	0/1:75:30,45:30:1068:45:1603:-121.948,0,-73.3468	0/0:67:67,0:67:2366:0:0:0,-20.169,-210.587	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.1171	0/0:101:101,0:101:3624:0:0:0,-30.404,-321.225	0/0:32:32,0:32:1148:0:0:0,-9.63296,-102.486	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.64543	0/0:88:88,0:88:3143:0:0:0,-26.4906,-279.317	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.4931	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.8927	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.1233	0/1:54:22,32:22:775:32:1152:-87.7029,0,-52.814	0/1:58:28,30:28:999:30:1071:-79.1708,0,-71.7117	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.5154	0/1:67:28,39:28:1000:39:1392:-105.409,0,-69.6343	0/0:47:47,0:47:1675:0:0:0,-14.1484,-150.011	0/1:31:15,16:15:540:16:572:-42.479,0,-39.1767	0/1:35:16,19:16:568:19:684:-51.3543,0,-39.9685	0/0:73:72,1:72:2576:1:36:0,-18.729,-226.032	0/0:76:73,3:73:2608:3:108:0,-12.8031,-222.628	0/1:33:20,13:20:716:13:468:-32.521,0,-54.1452	0/0:84:84,0:84:2999:0:0:0,-25.2865,-264.173	0/0:21:21,0:21:752:0:0:0,-6.32163,-67.1986	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.50599	0/0:88:88,0:88:3132:0:0:0,-26.4906,-277.063	0/1:45:17,28:17:612:28:1008:-77.4441,0,-40.8748	0/0:68:68,0:68:2419:0:0:0,-20.47,-215.152	0/1:133:77,56:77:2747:56:2001:-140.214,0,-205.451	0/1:52:40,12:40:1428:12:416:-21.957,0,-110.562	0/1:56:21,35:21:740:35:1252:-96.0488,0,-48.7573	0/1:13:8,5:8:284:5:176:-12.2716,0,-21.6534	0/1:60:27,33:27:960:33:1188:-88.9766,0,-67.5484	0/0:67:67,0:67:2404:0:0:0,-20.169,-213.882	0/0:75:74,0:74:2640:0:0:0,-22.2762,-235.807	0/1:20:12,8:12:423:8:288:-20.2455,0,-32.1873	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.005	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.1799	0/0:69:68,0:68:2444:0:0:0,-20.47,-218.246	0/0:22:22,0:22:788:0:0:0,-6.62266,-69.2541	0/1:38:19,19:19:676:19:680:-50.045,0,-48.8594	0/1:40:25,15:25:900:15:540:-36.8953,0,-66.8903	0/1:25:21,4:21:756:4:144:-5.3479,0,-60.1857	0/1:66:34,32:34:1224:32:1152:-84.1147,0,-89.2165	0/1:54:26,28:26:927:28:977:-71.9218,0,-66.7264	0/0:46:46,0:46:1640:0:0:0,-13.8474,-146.807	0/0:59:59,0:59:2107:0:0:0,-17.7608,-188.276
chr11	26921501	.	ACCG	GCCA,ACCA	140628	PASS	AB=0.506971,0.490359;ABP=4.43326,5.73189;AC=142,46;AF=0.755319,0.244681;AN=188;AO=5007,1668;CIGAR=1X2M1X,3M1X;DP=6691;DPB=6691.5;DPRA=17.9758,1.36009;EPP=10875.6,3625.03;EPPR=0;GTI=1;LEN=4,1;MEANALT=1.72043,2.15385;MQM=49.0857,59.2914;MQMR=0;NS=94;NUMALT=2;ODDS=2.00915;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=176980,59730;QR=0;RO=0;RPL=0,0;RPP=10875.6,3625.03;RPPR=0;RPR=5007,1668;RUN=1,1;SAF=5007,1668;SAP=10875.6,3625.03;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1060,0:-95.2726,-9.0309,0,-95.2726,-9.0309,-95.2726	1/1:84:0,84,0:0:0:84,0:2990,0:-267.735,-25.2865,0,-267.735,-25.2865,-267.735	1/2:93:0,55,38:0:0:55,38:1933,1360:-267.217,-111.19,-94.6332,-156.381,0,-144.942	1/2:172:0,78,94:0:0:78,94:2750,3364:-497.28,-274.554,-251.074,-223.079,0,-194.782	1/2:33:0,22,11:0:0:22,11:779,396:-95.3685,-32.6714,-26.0488,-63.0537,0,-59.7424	1/2:23:0,7,16:0:0:7,16:245,572:-66.8184,-46.9969,-44.8897,-20.1724,0,-15.3559	1/1:40:0,40,0:0:0:40,0:1376,0:-123.408,-12.0412,0,-123.408,-12.0412,-123.408	1/1:68:0,68,0:0:0:68,0:2403,0:-215.02,-20.47,0,-215.02,-20.47,-215.02	1/2:19:0,11,8:0:0:11,8:382,275:-53.3994,-22.6027,-19.2914,-31.1401,0,-28.7318	1/1:79:0,79,0:0:0:79,0:2808,0:-251.438,-23.7814,0,-251.438,-23.7814,-251.438	1/1:54:0,54,0:0:0:54,0:1928,0:-172.598,-16.2556,0,-172.598,-16.2556,-172.598	1/2:76:0,35,41:0:0:35,41:1232,1476:-220.061,-120.714,-110.178,-99.7009,0,-87.3587	1/2:56:0,26,30:0:0:26,30:919,1076:-161.763,-88.0503,-80.2235,-74.0654,0,-65.0345	1/1:81:0,81,0:0:0:81,0:2827,0:-252.071,-24.3834,0,-252.071,-24.3834,-252.071	1/2:43:0,18,25:0:0:18,25:647,896:-125.705,-73.3961,-67.9776,-52.6658,0,-45.14	1/1:52:0,51,1:0:0:51,1:1808,36:-160.189,-15.3525,0,-157.252,-12.0553,-156.951	1/2:62:0,32,30:0:0:32,30:1141,1080:-180.895,-88.4107,-78.7777,-92.8416,0,-83.8107	1/2:39:0,16,23:0:0:16,23:564,828:-113.31,-67.8487,-63.0322,-45.8144,0,-38.8907	1/1:29:0,28,0:0:0:28,0:975,0:-87.2641,-8.42884,0,-87.2641,-8.42884,-87.2641	1/2:122:0,76,46:0:0:76,46:2667,1652:-350.22,-135.034,-112.156,-215.482,0,-201.635	1/1:120:0,117,3:0:0:117,3:4146,108:-369.602,-35.2205,0,-360.79,-26.0484,-359.887	1/2:125:0,54,70:0:0:54,70:1919,2493:-358.914,-203.264,-187.009,-155.754,0,-134.682	1/2:51:0,26,25:0:0:26,25:932,900:-148.787,-73.2975,-65.4707,-75.846,0,-68.3203	1/1:104:0,103,1:0:0:103,1:3603,32:-321.358,-31.0061,0,-318.784,-28.1125,-318.483	1/1:60:0,60,0:0:0:60,0:2107,0:-187.312,-18.0618,0,-187.312,-18.0618,-187.312	1/2:164:0,100,63:0:0:100,63:3536,2248:-469.387,-183.15,-153.047,-286.233,0,-267.268	1/1:147:0,147,0:0:0:147,0:5216,0:-465.154,-44.2514,0,-465.154,-44.2514,-465.154	1/2:28:0,13,15:0:0:13,15:467,540:-81.707,-44.1498,-40.2364,-37.9133,0,-33.3978	1/1:185:0,184,1:0:0:184,1:6509,36:-582.689,-55.3895,0,-579.752,-52.0923,-579.451	1/2:121:0,68,53:0:0:68,53:2401,1900:-349.055,-155.274,-134.804,-194.136,0,-178.181	1/1:125:0,125,0:0:0:125,0:4442,0:-396.995,-37.6288,0,-396.995,-37.6288,-396.995	1/2:5:0,4,1:0:0:4,1:136,36:-14.2478,-3.29724,-2.09312,-11.306,0,-11.005	1/1:9:0,9,0:0:0:9,0:324,0:-29.307,-2.70927,0,-29.307,-2.70927,-29.307	1/1:2:0,2,0:0:0:2,0:72,0:-6.79966,-0.60206,0,-6.79966,-0.60206,-6.79966	1/1:2:0,2,0:0:0:2,0:71,0:-6.70873,-0.60206,0,-6.70873,-0.60206,-6.70873	1/1:5:0,5,0:0:0:5,0:177,0:-15.6471,-1.50515,0,-15.6471,-1.50515,-15.6471	1/2:156:0,75,81:0:0:75,81:2654,2908:-452.419,-237.119,-214.542,-215.655,0,-191.272	1/2:112:0,56,56:0:0:56,56:1991,1993:-323.183,-162.377,-145.52,-161.159,0,-144.301	1/1:64:0,64,0:0:0:64,0:2275,0:-203.242,-19.2659,0,-203.242,-19.2659,-203.242	1/1:1:0,1,0:0:0:1,0:36,0:-3.57343,-0.30103,0,-3.57343,-0.30103,-3.57343	1/2:112:0,65,46:0:0:65,46:2290,1652:-318.764,-134.726,-115.159,-184.091,0,-170.244	1/1:21:0,21,0:0:0:21,0:743,0:-66.4408,-6.32163,0,-66.4408,-6.32163,-66.4408	1/1:107:0,107,0:0:0:107,0:3754,0:-335.02,-32.2102,0,-335.02,-32.2102,-335.02	1/1:59:0,59,0:0:0:59,0:2078,0:-186.43,-17.7608,0,-186.43,-17.7608,-186.43	1/1:48:0,48,0:0:0:48,0:1681,0:-150.667,-14.4494,0,-150.667,-14.4494,-150.667	1/2:58:0,28,29:0:0:28,29:986,1036:-164.178,-84.524,-76.0952,-79.7234,0,-70.9935	1/2:79:0,41,37:0:0:41,37:1464,1313:-224.878,-107.064,-94.7219,-117.914,0,-106.776	1/1:127:0,126,1:0:0:126,1:4456,36:-398.302,-37.9298,0,-395.365,-34.6325,-395.064	1/1:96:0,96,0:0:0:96,0:3391,0:-303.567,-28.8989,0,-303.567,-28.8989,-303.567	1/2:85:0,45,40:0:0:45,40:1590,1440:-246.542,-117.857,-104.31,-129.041,0,-117	1/1:158:0,157,0:0:0:157,0:5541,0:-496.253,-47.2617,0,-496.253,-47.2617,-496.253	1/1:1:0,1,0:0:0:1,0:36,0:-3.58305,-0.30103,0,-3.58305,-0.30103,-3.58305	1/1:81:0,81,0:0:0:81,0:2895,0:-259.152,-24.3834,0,-259.152,-24.3834,-259.152	1/1:8:0,8,0:0:0:8,0:288,0:-26.1809,-2.40824,0,-26.1809,-2.40824,-26.1809	1/2:16:0,10,6:0:0:10,6:354,212:-46.2907,-17.6186,-14.6083,-29.0249,0,-27.2187	1/1:67:0,67,0:0:0:67,0:2372,0:-210.987,-20.169,0,-210.987,-20.169,-210.987	1/2:49:0,26,23:0:0:26,23:919,824:-142.017,-67.5027,-59.6759,-74.8698,0,-67.9461	1/1:6:0,6,0:0:0:6,0:2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chr11	27024322	.	T	A	14655.3	PASS	AB=0.486985;ABP=5.72346;AC=44;AF=0.23913;AN=184;AO=900;CIGAR=1X;DP=3760;DPB=3760;DPRA=1.05802;EPP=1957.34;EPPR=6206.91;GTI=1;LEN=1;MEANALT=1.06522;MQM=59.9611;MQMR=59.9814;NS=92;NUMALT=1;ODDS=0.457277;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32113;QR=101813;RO=2857;RPL=900;RPP=1957.34;RPPR=6206.91;RPR=0;RUN=1;SAF=0;SAP=1957.34;SAR=900;SRF=0;SRP=6206.91;SRR=2857;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8555	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.374	0/1:101:37,64:37:1317:64:2296:-176.497,0,-88.4258	0/1:110:72,38:72:2569:38:1364:-89.9474,0,-198.345	0/1:12:6,6:6:216:6:201:-14.8047,0,-16.1782	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/0:41:41,0:41:1453:0:0:0,-12.3422,-131.064	0/0:45:45,0:45:1575:0:0:0,-13.5463,-142.034	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:38:17,21:17:608:21:752:-56.5671,0,-43.6129	0/1:38:17,21:17:600:21:756:-56.9281,0,-42.8901	0/0:20:20,0:20:693:0:0:0,-6.0206,-62.6896	0/1:26:14,12:14:504:12:432:-31.3944,0,-37.8713	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:21:8,12:8:288:12:424:-32.1165,0,-19.887	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:53:25,28:25:896:28:976:-72.1919,0,-65.0058	0/0:74:74,0:74:2611:0:0:0,-22.2762,-235.234	0/1:49:18,31:18:644:31:1104:-84.9202,0,-43.5401	0/1:28:15,13:15:540:13:445:-31.7536,0,-40.5077	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:85:54,31:54:1872:31:1112:-74.8038,0,-143.164	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/1:14:3,11:3:108:11:381:-30.4062,0,-5.86075	0/0:85:85,0:85:3022:0:0:0,-25.5875,-272.208	0/1:36:22,14:22:777:14:504:-34.861,0,-59.4133	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:92:36,56:36:1296:56:2012:-153.658,0,-89.2492	0/1:37:18,19:18:648:19:684:-50.7522,0,-47.5138	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	.:.:.:.:.:.:.:.	0/1:53:29,24:29:1044:24:860:-61.7672,0,-78.3202	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.0734	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/1:43:22,21:22:758:21:748:-54.701,0,-55.5899	0/1:24:10,14:10:345:14:504:-38.4734,0,-24.1561	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.133	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:62:43,19:43:1514:19:684:-43.2265,0,-117.885	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:116:116,0:116:4160:0:0:0,-34.9195,-374.582	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:22:13,9:13:460:9:320:-22.5197,0,-35.1127	0/1:82:35,46:35:1245:46:1640:-123.145,0,-87.6096	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:131:87,44:87:3124:44:1576:-102.697,0,-241.951	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/1:28:21,7:21:756:7:252:-14.6001,0,-59.9384	0/1:34:11,23:11:396:23:824:-64.2483,0,-25.7477	0/0:49:48,1:48:1728:1:36:0,-11.1522,-152.207	0/0:40:39,1:39:1377:1:36:0,-8.44292,-120.628	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.638	0/1:49:35,14:35:1252:14:489:-29.5884,0,-98.2346	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/1:119:74,45:74:2644:45:1612:-109.547,0,-202.384	0/1:26:10,16:10:345:16:561:-42.9903,0,-23.554	0/1:99:45,54:45:1590:54:1924:-143.635,0,-113.584	0/1:5:3,2:3:93:2:72:-5.33157,0,-7.17158	0/1:64:28,36:28:1000:36:1288:-96.9577,0,-71.0495	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.048	0/0:99:99,0:99:3541:0:0:0,-29.802,-318.811	0/1:55:16,39:16:561:39:1404:-110.103,0,-34.2605	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:38:16,21:16:572:21:739:-55.3348,0,-40.3156	0/1:40:19,21:19:680:21:752:-55.9651,0,-49.488	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:15:6,9:6:216:9:316:-24.2634,0,-15.2751	0/1:28:9,19:9:312:19:669:-52.106,0,-19.9865	0/0:238:238,0:238:8481:0:0:0,-71.6451,-763.287	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579
chr11	27105282	.	T	C	41119.4	PASS	AB=0.525311;ABP=28.0729;AC=45;AF=0.241935;AN=186;AO=2374;CIGAR=1X;DP=9402;DPB=9402;DPRA=1.15877;EPP=5097.46;EPPR=15028.3;GTI=0;LEN=1;MEANALT=1.07692;MQM=59.9958;MQMR=59.971;NS=93;NUMALT=1;ODDS=0.655535;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=84953;QR=251656;RO=7023;RPL=7;RPP=5097.46;RPPR=15028.3;RPR=2367;RUN=1;SAF=2374;SAP=5158.09;SAR=0;SRF=7023;SRP=15253.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.052	0/1:154:66,88:66:2368:88:3152:-237.547,0,-167.019	0/1:243:79,164:79:2829:164:5852:-453.641,0,-181.696	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:37:27,10:27:972:10:352:-20.8801,0,-76.6598	0/0:111:111,0:111:3976:0:0:0,-33.4143,-358.03	0/0:158:158,0:158:5645:0:0:0,-47.5627,-508.169	0/1:129:58,71:58:2080:71:2548:-190.737,0,-148.632	0/0:119:119,0:119:4272:0:0:0,-35.8226,-384.657	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:77:39,38:39:1400:38:1360:-99.5213,0,-103.12	0/1:54:23,31:23:819:31:1108:-83.7754,0,-57.7759	0/0:72:71,1:71:2548:1:21:0,-19.5742,-227.47	0/1:76:28,48:28:1004:48:1720:-132.207,0,-67.7976	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/1:36:22,14:22:792:14:504:-34.861,0,-60.7686	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:125:73,52:73:2605:52:1860:-130.051,0,-197.068	0/0:113:112,1:112:4032:1:36:0,-30.4181,-359.439	0/1:89:23,66:23:824:66:2372:-186.946,0,-47.6916	0/1:131:63,68:63:2264:68:2425:-179.064,0,-164.587	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:65:65,0:65:2325:0:0:0,-19.5669,-209.508	0/1:293:166,127:166:5964:127:4540:-320.563,0,-448.661	0/0:244:244,0:244:8755:0:0:0,-73.4513,-787.508	0/1:20:12,7:12:432:7:248:-16.5855,0,-33.1418	0/0:302:302,0:302:10822:0:0:0,-90.9111,-973.877	0/1:163:88,75:88:3164:75:2673:-191.747,0,-235.916	0/0:151:151,0:151:5417:0:0:0,-45.4555,-487.657	0/1:8:7,1:7:237:1:36:-1.19004,0,-19.2508	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:187:102,85:102:3640:85:3048:-218.257,0,-271.51	0/1:164:63,101:63:2252:101:3624:-276.996,0,-153.574	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	.:.:.:.:.:.:.:.	0/1:234:124,110:124:4429:110:3952:-285.429,0,-328.34	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:126:126,0:126:4504:0:0:0,-37.9298,-405.526	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/1:101:52,49:52:1849:49:1744:-126.84,0,-136.284	0/1:85:46,39:46:1656:39:1400:-100.712,0,-123.741	0/0:160:160,0:160:5729:0:0:0,-48.1648,-515.724	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.843	0/1:209:91,118:91:3276:118:4227:-317.694,0,-232.143	0/0:117:117,0:117:4189:0:0:0,-35.2205,-377.186	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/0:120:120,0:120:4312:0:0:0,-36.1236,-388.255	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:213:212,1:212:7612:1:36:0,-60.5211,-681.516	0/1:37:14,23:14:500:23:828:-63.706,0,-34.1981	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:117:59,58:59:2116:58:2088:-152.969,0,-155.488	0/1:111:52,59:52:1868:59:2112:-156.935,0,-134.985	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:215:102,113:102:3653:113:4037:-298.795,0,-264.251	0/0:204:201,1:201:7208:1:36:0,-57.5197,-645.237	0/1:82:59,23:59:2120:23:828:-50.1597,0,-166.384	0/1:78:35,43:35:1256:43:1515:-113.162,0,-89.8649	0/0:162:161,1:161:5757:1:36:0,-45.1686,-514.586	0/0:276:273,2:273:9794:2:72:0,-76.2798,-874.571	0/1:41:19,22:19:665:22:792:-59.2634,0,-47.8306	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:51:50,1:50:1800:1:36:0,-11.7543,-158.684	0/1:36:19,17:19:680:17:604:-43.8535,0,-50.6921	0/0:236:236,0:236:8472:0:0:0,-71.0431,-762.474	0/1:79:41,38:41:1476:38:1362:-99.099,0,-109.355	0/0:194:194,0:194:6930:0:0:0,-58.3998,-623.764	0/1:231:100,130:100:3577:130:4672:-351.043,0,-252.539	0/1:67:28,39:28:996:39:1373:-103.698,0,-69.7859	0/1:134:74,60:74:2652:60:2156:-153.969,0,-198.588	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:135:48,87:48:1728:87:3105:-239.037,0,-115.166	0/0:122:122,0:122:4361:0:0:0,-36.7257,-392.173	0/0:215:215,0:215:7675:0:0:0,-64.7214,-689.846	0/1:59:28,31:28:1008:31:1112:-82.6306,0,-73.2756	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:61:35,26:35:1260:26:915:-64.3019,0,-95.3427	0/1:71:34,37:34:1220:37:1320:-97.7288,0,-88.7337	0/1:55:24,31:24:860:31:1116:-84.195,0,-61.1652	0/1:151:60,91:60:2160:91:3268:-248.884,0,-149.211	0/1:63:18,45:18:648:45:1620:-127.125,0,-39.687	0/0:220:220,0:220:7866:0:0:0,-66.2266,-707.775	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981
chr11	27105400	.	AATGT	TATGGT,TATGT	157210	PASS	AB=0.48686,0.506501;ABP=8.43147,4.33721;AC=137,47;AF=0.744565,0.255435;AN=184;AO=5584,1843;CIGAR=1X2M1I2M,1X4M;DP=7469;DPB=8590.2;DPRA=10.2486,1.0542;EPP=12128.5,4005.03;EPPR=5.18177;GTI=1;LEN=6,1;MEANALT=1.95604,2.46939;MQM=59.7582,59.9967;MQMR=60;NS=92;NUMALT=2;ODDS=0.92564;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=34,34;PQR=0;PRO=0;QA=196943,65082;QR=36;RO=1;RPL=5584,1843;RPP=12128.5,4005.03;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12128.5,4005.03;SAR=5584,1843;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47,0:0:0:47,0:1657,0:-149.399,-14.1484,0,-149.399,-14.1484,-149.399	1/1:157:0,156,0:0:0:156,0:5525,0:-496.959,-46.9607,0,-496.959,-46.9607,-496.959	1/2:88:0,38,50:0:0:38,50:1323,1773:-252.374,-144.8,-133.36,-107.925,0,-92.8733	1/2:172:0,65,106:0:0:65,106:2302,3723:-490.634,-303.112,-283.545,-187.623,0,-155.714	1/2:29:0,12,17:0:0:12,17:409,604:-82.75,-49.5731,-45.9607,-33.5236,0,-28.4061	1/2:25:0,6,19:0:0:6,19:213,668:-72.0823,-54.7261,-52.9199,-17.7102,0,-11.9907	1/1:119:0,119,0:0:0:119,0:4200,0:-378.183,-35.8226,0,-378.183,-35.8226,-378.183	1/1:138:0,138,0:0:0:138,0:4848,0:-436.371,-41.5421,0,-436.371,-41.5421,-436.371	1/2:136:0,68,68:0:0:68,68:2411,2400:-392.203,-195.788,-175.318,-196.768,0,-176.298	1/1:127:0,127,0:0:0:127,0:4472,0:-402.653,-38.2308,0,-402.653,-38.2308,-402.653	1/1:20:0,20,0:0:0:20,0:705,0:-63.7731,-6.0206,0,-63.7731,-6.0206,-63.7731	1/2:61:0,34,27:0:0:34,27:1199,956:-175.746,-78.2279,-67.9929,-97.8707,0,-89.7429	1/2:55:0,22,33:0:0:22,33:785,1188:-161.282,-97.2946,-90.6719,-64.3453,0,-54.4113	1/1:45:0,45,0:0:0:45,0:1582,0:-142.669,-13.5464,0,-142.669,-13.5464,-142.669	1/2:63:0,35,27:0:0:35,27:1236,964:-179.241,-78.5893,-68.0532,-100.647,0,-92.5191	1/1:42:0,42,0:0:0:42,0:1500,0:-135.289,-12.6433,0,-135.289,-12.6433,-135.289	1/2:49:0,22,27:0:0:22,27:781,964:-142.545,-78.949,-72.3264,-63.9513,0,-55.8235	1/2:45:0,26,19:0:0:26,19:916,680:-130.382,-55.8096,-47.9828,-74.928,0,-69.2084	1/1:15:0,15,0:0:0:15,0:534,0:-48.3907,-4.51545,0,-48.3907,-4.51545,-48.3907	1/2:118:0,65,53:0:0:65,53:2298,1872:-339.963,-152.805,-133.238,-187.512,0,-171.557	1/1:111:0,109,1:0:0:109,1:3806,32:-342.385,-32.8123,0,-339.807,-30.2488,-339.506	1/2:46:0,20,26:0:0:20,26:699,920:-132.151,-75.2903,-69.2697,-57.2121,0,-49.3853	1/2:53:0,29,24:0:0:29,24:1028,860:-154.243,-70.4971,-61.7672,-84.1028,0,-76.8781	1/1:109:0,109,0:0:0:109,0:3804,0:-342.56,-32.8123,0,-342.56,-32.8123,-342.56	1/1:57:0,57,0:0:0:57,0:2009,0:-181.023,-17.1587,0,-181.023,-17.1587,-181.023	1/2:294:1,146,146:1:36:146,146:5148,5154:-835.615,-416.763,-375.75,-416.213,0,-375.2	1/1:136:0,136,0:0:0:136,0:4757,0:-428.285,-40.9401,0,-428.285,-40.9401,-428.285	1/2:38:0,14,24:0:0:14,24:501,852:-110.631,-69.7757,-65.5612,-41.2124,0,-33.9877	1/1:192:0,192,0:0:0:192,0:6812,0:-613.16,-57.7978,0,-613.16,-57.7978,-613.16	1/2:152:0,71,79:0:0:71,79:2515,2797:-432.729,-227.859,-206.486,-204.893,0,-181.111	1/1:76:0,75,0:0:0:75,0:2631,0:-236.756,-22.5773,0,-236.756,-22.5773,-236.756	1/2:4:0,3,1:0:0:3,1:107,36:-12.0173,-3.29724,-2.39415,-9.07908,0,-8.77805	1/1:8:0,8,0:0:0:8,0:282,0:-25.7195,-2.40824,0,-25.7195,-2.40824,-25.7195	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:6:0,3,3:0:0:3,3:103,108:-17.4387,-9.17208,-8.26899,-8.61657,0,-7.71348	.:.:.:.:.:.:.:.	1/2:217:0,102,111:0:0:102,111:3622,3952:-617.271,-322.146,-291.441,-295.166,0,-261.752	1/2:183:0,83,98:0:0:83,98:2918,3445:-517.945,-280.43,-255.445,-237.53,0,-208.029	1/1:36:0,35,0:0:0:35,0:1237,0:-111.354,-10.5361,0,-111.354,-10.5361,-111.354	.:.:.:.:.:.:.:.	1/2:135:0,73,62:0:0:73,62:2574,2178:-387.198,-177.62,-155.644,-209.93,0,-191.266	1/1:14:0,14,0:0:0:14,0:500,0:-45.3346,-4.21442,0,-45.3346,-4.21442,-45.3346	1/1:94:0,93,0:0:0:93,0:3241,0:-291.573,-27.9958,0,-291.573,-27.9958,-291.573	1/1:63:0,63,0:0:0:63,0:2235,0:-201.386,-18.9649,0,-201.386,-18.9649,-201.386	1/1:70:0,70,0:0:0:70,0:2497,0:-224.94,-21.0721,0,-224.94,-21.0721,-224.94	1/2:91:0,44,45:0:0:44,45:1565,1596:-257.654,-130.11,-116.865,-127.623,0,-114.077	1/2:102:0,48,54:0:0:48,54:1717,1936:-298.27,-158.261,-143.811,-140.367,0,-124.111	1/1:142:0,140,1:0:0:140,1:4933,36:-443.602,-42.1442,0,-440.664,-39.2068,-440.363	1/1:119:0,119,0:0:0:119,0:4219,0:-379.892,-35.8226,0,-379.892,-35.8226,-379.892	1/2:72:0,35,36:0:0:35,36:1241,1280:-205.403,-104.306,-93.7704,-101.092,0,-90.2547	1/1:136:0,136,0:0:0:136,0:4804,0:-432.39,-40.9401,0,-432.39,-40.9401,-432.39	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	1/1:85:0,84,0:0:0:84,0:2907,0:-261.443,-25.2865,0,-261.443,-25.2865,-261.443	1/1:34:0,34,0:0:0:34,0:1204,0:-108.665,-10.235,0,-108.665,-10.235,-108.665	1/2:7:0,5,2:0:0:5,2:180,68:-20.557,-5.85565,-4.3505,-15.0469,0,-14.4449	1/1:80:0,80,0:0:0:80,0:2807,0:-252.871,-24.0824,0,-252.871,-24.0824,-252.871	1/2:46:0,27,18:0:0:27,18:948,636:-128.972,-51.8184,-43.6905,-77.1741,0,-71.7555	1/1:1:0,1,0:0:0:1,0:35,0:-3.49863,-0.30103,0,-3.49863,-0.30103,-3.49863	1/1:15:0,15,0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chr11	27124927	.	T	C	17037.3	PASS	AB=0.439511;ABP=81.0321;AC=46;AF=0.247312;AN=186;AO=1083;CIGAR=1X;DP=5505;DPB=5505;DPRA=0.907161;EPP=2354.71;EPPR=9605.26;GTI=2;LEN=1;MEANALT=1;MQM=59.3878;MQMR=59.9674;NS=93;NUMALT=1;ODDS=0.286023;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=38838;QR=158400;RO=4422;RPL=0;RPP=2354.71;RPPR=9605.26;RPR=1083;RUN=1;SAF=1083;SAP=2354.71;SAR=0;SRF=4422;SRP=9605.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:104:104,0:104:3721:0:0:0,-31.3071,-335.09	0/1:37:19,18:19:676:18:648:-47.5056,0,-50.0299	0/1:70:51,19:51:1836:19:676:-40.0889,0,-144.449	0/1:20:16,4:16:576:4:144:-7.28358,0,-46.1544	0/1:16:8,8:8:288:8:284:-21.072,0,-21.4509	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.249	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.093	0/1:41:20,21:20:712:21:756:-56.025,0,-52.0644	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.311	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:65:31,34:31:1093:34:1212:-89.8079,0,-79.1107	0/1:115:64,51:64:2292:51:1827:-129.652,0,-171.923	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:45:29,16:29:1040:16:572:-38.2624,0,-80.368	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:46:20,26:20:720:26:932:-70.3387,0,-51.2814	0/1:51:31,20:31:1108:20:720:-49.7681,0,-84.6785	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:64:37,27:37:1324:27:968:-68.1621,0,-100.196	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:108:22,86:22:765:86:3092:-245.99,0,-36.6565	0/1:63:47,16:47:1688:16:572:-32.8485,0,-133.242	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:167:118,49:118:4200:49:1756:-108.05,0,-327.641	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.607	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/0:143:143,0:143:5112:0:0:0,-43.0473,-459.12	0/1:52:30,22:30:1080:22:792:-55.9144,0,-81.8597	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:4,3:4:144:3:108:-7.95695,0,-11.2064	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:199:105,94:105:3772:94:3376:-243.978,0,-279.773	0/1:97:56,41:56:2008:41:1476:-103.754,0,-151.793	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	.:.:.:.:.:.:.:.	0/1:58:32,26:32:1152:26:936:-67.0823,0,-86.5304	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:69:69,0:69:2441:0:0:0,-20.7711,-219.945	0/1:90:51,39:51:1832:39:1404:-99.5629,0,-138.068	0/1:57:34,23:34:1220:23:828:-57.6604,0,-92.9481	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/1:41:28,13:28:1008:13:464:-29.7529,0,-78.6941	0/0:72:72,0:72:2561:0:0:0,-21.6742,-230.739	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.784	0/0:27:27,0:27:963:0:0:0,-8.12781,-86.9859	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.189	0/1:25:17,8:17:604:8:288:-18.7417,0,-47.1649	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/1:86:42,44:42:1508:44:1580:-116.319,0,-110.126	1/1:2:0,2:0:0:2:72:-6.83426,-0.60206,0	0/1:102:64,38:64:2292:38:1364:-92.3547,0,-175.836	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.273	0/1:40:29,11:29:1036:11:392:-23.4422,0,-81.5127	0/1:36:22,14:22:784:14:485:-31.763,0,-60.0468	0/0:132:130,2:130:4648:2:69:0,-33.1861,-411.933	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.605	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:10:2,8:2:72:8:288:-23.2477,0,-3.82642	0/0:76:76,0:76:2724:0:0:0,-22.8783,-245.403	0/1:43:21,22:21:752:22:792:-58.458,0,-55.062	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:41:22,19:22:784:19:684:-49.5457,0,-58.5417	0/1:54:27,27:27:972:27:964:-70.805,0,-71.5423	0/1:44:29,15:29:1044:15:540:-35.6912,0,-81.0295	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:45:27,18:27:968:18:640:-44.3737,0,-73.891	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/1:86:49,37:49:1760:37:1325:-93.6634,0,-132.795	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:121:121,0:121:4333:0:0:0,-36.4246,-390.055	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:58:30,28:30:1065:28:1008:-73.5684,0,-78.7	0/1:58:37,21:37:1332:21:756:-50.8959,0,-102.344	0/1:16:12,4:12:428:4:144:-8.36414,0,-34.0423	0/1:75:39,36:39:1396:36:1288:-93.6417,0,-103.362	0/1:63:20,43:20:716:43:1544:-120.281,0,-45.8028	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909
chr11	27124978	.	A	T	15967.1	PASS	AB=0.439542;ABP=77.8418;AC=46;AF=0.247312;AN=186;AO=1040;CIGAR=1X;DP=5297;DPB=5297;DPRA=0.918897;EPP=2261.34;EPPR=9238.28;GTI=3;LEN=1;MEANALT=1.02128;MQM=59.4712;MQMR=59.9605;NS=93;NUMALT=1;ODDS=0.341746;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36848;QR=151151;RO=4253;RPL=1040;RPP=2261.34;RPPR=9238.28;RPR=0;RUN=1;SAF=1040;SAP=2261.34;SAR=0;SRF=4253;SRP=9238.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:100:100,0:100:3545:0:0:0,-30.103,-319.26	0/1:38:20,18:20:707:18:648:-47.2045,0,-52.5154	0/1:70:51,19:51:1824:19:675:-39.9979,0,-143.369	0/1:19:15,4:15:540:4:122:-5.55619,0,-43.217	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.768	0/0:91:91,0:91:3199:0:0:0,-27.3937,-288.134	0/1:37:18,19:18:640:19:676:-50.0299,0,-46.7912	0/0:82:81,1:81:2881:1:36:0,-21.0862,-255.928	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:63:29,34:29:1027:34:1204:-89.6894,0,-73.7773	0/1:112:61,51:61:2147:51:1752:-124.164,0,-159.782	0/0:55:55,0:55:1940:0:0:0,-16.5566,-174.874	0/1:45:29,16:29:1031:16:576:-38.6239,0,-79.5563	0/0:44:44,0:44:1560:0:0:0,-13.2453,-140.692	0/1:42:19,23:19:680:23:794:-59.126,0,-48.8859	0/1:51:31,20:31:1104:20:712:-49.0508,0,-84.3181	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:60:35,25:35:1252:25:892:-62.5309,0,-94.9233	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:106:22,84:22:780:84:2981:-236.607,0,-38.6139	0/1:62:48,13:48:1712:13:464:-23.3751,0,-135.643	0/0:24:24,0:24:834:0:0:0,-7.22472,-75.3731	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:159:109,50:109:3851:50:1774:-112.077,0,-298.892	0/0:115:115,0:115:4076:0:0:0,-34.6184,-367.028	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	0/0:141:141,0:141:5005:0:0:0,-42.4452,-449.497	0/1:47:27,20:27:968:20:708:-49.8624,0,-73.289	0/0:78:78,0:78:2804:0:0:0,-23.4803,-252.599	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:4,3:4:144:3:108:-7.95695,0,-11.2064	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:195:100,95:100:3548:95:3370:-244.71,0,-260.828	0/1:89:52,37:52:1841:37:1292:-89.7235,0,-139.177	0/0:59:59,0:59:2090:0:0:0,-17.7608,-188.369	.:.:.:.:.:.:.:.	0/1:55:30,25:30:1080:25:887:-63.5822,0,-80.9566	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.911	0/0:67:67,0:67:2353:0:0:0,-20.169,-212.029	0/1:90:53,37:53:1860:37:1328:-92.7274,0,-140.584	0/1:52:31,21:31:1112:21:744:-51.6088,0,-84.7378	0/0:84:84,0:84:2989:0:0:0,-25.2865,-269.241	0/0:97:96,0:96:3412:0:0:0,-28.8989,-306.934	0/1:40:27,13:27:968:13:464:-30.054,0,-75.3962	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.227	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:75:75,0:75:2650:0:0:0,-22.5772,-238.74	0/1:24:16,8:16:572:8:284:-18.6786,0,-44.5887	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:83:39,44:39:1392:44:1558:-115.408,0,-100.594	1/1:2:0,2:0:0:2:72:-6.83426,-0.60206,0	0/1:102:64,38:64:2272:38:1364:-92.3553,0,-174.038	0/0:137:137,0:137:4870:0:0:0,-41.2411,-438.453	0/1:39:28,11:28:1000:11:396:-24.1039,0,-78.5752	0/1:32:21,11:21:748:11:384:-25.2584,0,-58.0123	0/0:124:123,1:123:4368:1:36:0,-33.7299,-389.697	0/0:124:124,0:124:4386:0:0:0,-37.3277,-394.915	0/1:17:10,7:10:360:7:244:-17.1819,0,-27.6268	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/1:10:2,8:2:72:8:288:-23.2477,0,-3.82642	0/0:73:73,0:73:2597:0:0:0,-21.9752,-233.977	0/1:37:18,19:18:636:19:672:-49.6641,0,-46.4299	0/0:100:100,0:100:3556:0:0:0,-30.103,-320.25	0/1:40:21,19:21:748:19:680:-49.4856,0,-55.6041	0/1:52:26,26:26:924:26:902:-65.8228,0,-67.8241	0/1:44:29,15:29:1040:15:540:-35.6912,0,-80.669	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:42:25,17:25:884:17:612:-42.7609,0,-67.2351	0/0:50:50,0:50:1771:0:0:0,-15.0515,-159.672	0/0:95:95,0:95:3369:0:0:0,-28.5978,-303.424	0/1:84:48,36:48:1712:36:1283:-90.4857,0,-129.079	0/0:46:46,0:46:1639:0:0:0,-13.8474,-147.798	0/0:73:72,0:72:2573:0:0:0,-21.6742,-231.458	0/0:116:116,0:116:4124:0:0:0,-34.9195,-371.256	0/0:60:59,0:59:2116:0:0:0,-17.7608,-190.349	0/1:55:28,27:28:1000:27:964:-70.512,0,-73.7587	0/1:54:34,20:34:1212:20:712:-48.1415,0,-92.7566	0/1:16:12,4:12:409:4:144:-8.36414,0,-32.319	0/1:72:38,34:38:1349:34:1194:-86.085,0,-100.034	0/1:61:21,40:21:743:40:1416:-109.369,0,-48.8305	0/0:51:51,0:51:1785:0:0:0,-15.3525,-160.928	0/0:80:80,0:80:2831:0:0:0,-24.0824,-255.027
chr11	27145672	.	GGTT	AGTC,AGTT	133792	PASS	AB=0.497466,0.497466;ABP=3.14235,3.14235;AC=142,44;AF=0.763441,0.236559;AN=186;AO=3839,1183;CIGAR=1X2M1X,1X3M;DP=5045;DPB=5045.75;DPRA=0,1.04726;EPP=975.179,269.463;EPPR=7.35324;GTI=1;LEN=4,1;MEANALT=1.74194,2.20833;MQM=59.975,60;MQMR=60;NS=93;NUMALT=2;ODDS=2.37592;PAIRED=0,0;PAIREDR=0;PAO=4,0;PQA=129,0;PQR=0;PRO=0;QA=134693,42276;QR=71;RO=2;RPL=2575,782;RPP=975.179,269.463;RPPR=7.35324;RPR=1264,401;RUN=1,1;SAF=0,0;SAP=8339.29,2571.86;SAR=3839,1183;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16,0:0:0:16,0:552,0:-50.0041,-4.81648,0,-50.0041,-4.81648,-50.0041	1/1:49:0,49,0:0:0:49,0:1722,0:-155.264,-14.7505,0,-155.264,-14.7505,-155.264	1/2:70:0,32,38:0:0:32,38:1144,1368:-205.26,-111.982,-102.349,-93.6365,0,-82.1974	1/2:100:2,56,42:2:71:56,42:1961,1501:-275.551,-116.6,-105.528,-153.767,0,-146.909	1/2:19:0,10,9:0:0:10,9:357,324:-55.9001,-26.7966,-23.7863,-29.462,0,-26.7527	1/2:33:0,15,18:0:0:15,18:525,648:-95.9431,-53.2333,-48.7179,-43.0642,0,-37.6456	1/1:78:0,77,0:0:0:77,0:2668,0:-240.008,-23.1793,0,-240.008,-23.1793,-240.008	1/1:51:0,50,1:0:0:50,1:1767,36:-158.954,-15.0515,0,-156.016,-11.7543,-155.715	1/2:21:0,11,9:0:0:11,9:375,324:-56.8525,-26.4368,-23.1254,-30.4083,0,-27.699	1/1:64:0,64,0:0:0:64,0:2253,0:-203.033,-19.2659,0,-203.033,-19.2659,-203.033	1/1:42:0,42,0:0:0:42,0:1495,0:-134.844,-12.6433,0,-134.844,-12.6433,-134.844	1/2:43:0,22,20:0:0:22,20:776,679:-118.336,-55.1395,-48.5168,-63.276,0,-57.2554	1/2:33:0,19,14:0:0:19,14:670,504:-96.0333,-41.4837,-35.7641,-54.9064,0,-50.6919	1/1:68:0,67,0:0:0:67,0:2362,0:-212.557,-20.169,0,-212.557,-20.169,-212.557	1/2:27:0,15,12:0:0:15,12:533,432:-79.0388,-35.6088,-31.0934,-43.7877,0,-40.1753	1/1:32:0,32,0:0:0:32,0:1134,0:-102.369,-9.63296,0,-102.369,-9.63296,-102.369	1/2:44:0,29,15:0:0:29,15:1021,540:-127.536,-44.4211,-35.6912,-83.4721,0,-78.9567	1/2:17:0,4,13:0:0:4,13:143,468:-50.2057,-38.5463,-37.3421,-12.0173,0,-8.10393	1/1:20:0,20,0:0:0:20,0:700,0:-63.3227,-6.0206,0,-63.3227,-6.0206,-63.3227	1/2:144:0,69,75:0:0:69,75:2420,2679:-415.707,-218.777,-198.006,-197.283,0,-174.706	1/1:60:0,59,0:0:0:59,0:2064,0:-185.739,-17.7608,0,-185.739,-17.7608,-185.739	1/2:68:0,21,47:0:0:21,47:741,1692:-198.756,-138.418,-132.097,-60.6926,0,-46.5442	1/2:24:0,9,14:0:0:9,14:323,504:-67.6141,-41.2637,-38.5544,-26.4809,0,-22.2665	1/1:57:0,57,0:0:0:57,0:1994,0:-179.732,-17.1587,0,-179.732,-17.1587,-179.732	1/1:23:0,23,0:0:0:23,0:816,0:-73.759,-6.92369,0,-73.759,-6.92369,-73.759	1/2:145:0,75,69:0:0:75,69:2626,2484:-416.337,-202.682,-180.105,-213.65,0,-192.879	1/1:136:0,134,0:0:0:134,0:4710,0:-423.74,-40.338,0,-423.74,-40.338,-423.74	1/2:10:0,7,3:0:0:7,3:252,108:-29.734,-9.17208,-7.06487,-20.9217,0,-20.0187	1/1:199:0,197,0:0:0:197,0:6958,0:-625.989,-59.3029,0,-625.989,-59.3029,-625.989	1/2:78:0,41,37:0:0:41,37:1436,1317:-224.531,-107.693,-95.3504,-117.191,0,-106.053	1/1:73:0,72,0:0:0:72,0:2519,0:-226.663,-21.6742,0,-226.663,-21.6742,-226.663	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:11:0,11,0:0:0:11,0:390,0:-35.4385,-3.31133,0,-35.4385,-3.31133,-35.4385	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:5:0,1,4:0:0:1,4:29,144:-14.4042,-12.1095,-11.8085,-2.59863,0,-1.39451	1/1:7:0,7,0:0:0:7,0:251,0:-22.9379,-2.10721,0,-22.9379,-2.10721,-22.9379	1/2:110:0,71,39:0:0:71,39:2517,1370:-316.912,-111.855,-90.4822,-205.409,0,-193.669	1/2:142:0,52,89:0:0:52,89:1838,3196:-410.401,-260.711,-245.058,-149.686,0,-122.894	1/1:44:0,44,0:0:0:44,0:1558,0:-140.511,-13.2453,0,-140.511,-13.2453,-140.511	.:.:.:.:.:.:.:.	1/2:73:0,34,39:0:0:34,39:1184,1400:-210.835,-114.559,-104.324,-96.6287,0,-84.8886	1/1:18:0,18,0:0:0:18,0:647,0:-58.5616,-5.41854,0,-58.5616,-5.41854,-58.5616	1/1:61:0,60,1:0:0:60,1:2114,36:-190.169,-18.0618,0,-187.231,-14.7646,-186.93	1/1:33:0,33,0:0:0:33,0:1157,0:-104.435,-9.93399,0,-104.435,-9.93399,-104.435	1/1:37:0,37,0:0:0:37,0:1297,0:-116.671,-11.1381,0,-116.671,-11.1381,-116.671	1/2:26:0,14,12:0:0:14,12:488,432:-75.2904,-35.6088,-31.3944,-40.0362,0,-36.4238	1/2:54:0,32,22:0:0:32,22:1136,792:-157.541,-64.983,-55.3501,-92.9158,0,-86.2931	1/1:100:0,100,0:0:0:100,0:3511,0:-316.145,-30.103,0,-316.145,-30.103,-316.145	1/1:58:0,58,0:0:0:58,0:2022,0:-182.248,-17.4597,0,-182.248,-17.4597,-182.248	1/2:73:0,35,38:0:0:35,38:1233,1352:-210.925,-110.541,-100.005,-100.737,0,-89.298	1/1:131:0,131,0:0:0:131,0:4574,0:-411.834,-39.4349,0,-411.834,-39.4349,-411.834	1/1:4:0,4,0:0:0:4,0:143,0:-12.8621,-1.20412,0,-12.8621,-1.20412,-12.8621	1/1:75:0,74,0:0:0:74,0:2566,0:-230.832,-22.2762,0,-230.832,-22.2762,-230.832	1/1:16:0,16,0:0:0:16,0:553,0:-50.0956,-4.81648,0,-50.0956,-4.81648,-50.0956	1/2:22:0,12,10:0:0:12,10:406,360:-62.6363,-29.734,-26.1216,-33.2523,0,-30.242	1/1:58:0,58,0:0:0:58,0:2014,0:-181.529,-17.4597,0,-181.529,-17.4597,-181.529	1/2:10:0,9,1:0:0:9,1:317,36:-29.0983,-3.29724,-0.587975,-26.1601,0,-25.859	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:21:0,21,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chr11	27292993	.	T	C	222555	PASS	AB=0.721429;ABP=1612.82;AC=152;AF=0.808511;AN=188;AO=10356;CIGAR=1X;DP=11775;DPB=11775;DPRA=0;EPP=22490.8;EPPR=3075.64;GTI=21;LEN=1;MEANALT=1.04255;MQM=48.7152;MQMR=23.2954;NS=94;NUMALT=1;ODDS=0.687692;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=371052;QR=50647;RO=1415;RPL=0;RPP=22490.8;RPPR=3075.64;RPR=10356;RUN=1;SAF=10356;SAP=22490.8;SAR=0;SRF=1415;SRP=3075.64;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:1004:-89.2286,-8.42884,0	1/1:104:8,96:8:284:96:3436:-294.692,-19.0475,0	1/1:195:16,178:16:576:178:6380:-536.184,-24.3702,0	0/1:243:35,208:35:1256:208:7433:-589.264,0,-0.724218	1/1:62:0,62:0:0:62:2220:-196.485,-18.6639,0	1/1:79:1,78:1:36:78:2800:-246.819,-21.4078,0	1/1:154:5,149:5:180:149:5325:-464.292,-37.4976,0	1/1:236:3,233:3:108:233:8364:-742.293,-66.6792,0	0/1:109:17,91:17:603:91:3248:-256.929,0,-0.767548	1/1:127:7,120:7:237:120:4304:-371.699,-24.4446,0	0/1:60:17,43:17:612:43:1548:-120.794,0,-18.9571	0/1:95:37,58:37:1315:58:2080:-157.501,0,-49.4094	0/1:95:28,67:28:1008:67:2404:-184.01,0,-32.3737	0/1:106:18,88:18:648:88:3156:-249.393,0,-0.537229	0/1:118:40,78:40:1436:78:2782:-213.451,0,-46.9293	0/1:63:25,38:25:900:38:1368:-103.43,0,-31.9656	1/1:106:13,93:13:468:93:3323:-263.561,-1.72407,0	0/1:73:13,60:13:468:60:2146:-169.599,0,-4.53521	0/1:21:7,14:7:252:14:493:-37.6801,0,-8.0349	1/1:203:7,196:7:229:196:7032:-614.648,-48.0705,0	1/1:151:6,145:6:216:145:5157:-448.547,-34.7122,0	1/1:185:4,181:4:136:181:6508:-575.498,-49.4871,0	1/1:88:5,82:5:180:82:2944:-252.551,-15.8702,0	1/1:136:2,134:2:68:134:4812:-425.425,-38.4764,0	1/1:110:2,108:2:72:108:3868:-341.655,-28.2796,0	1/1:381:23,358:23:820:358:12840:-1100.86,-66.9047,0	1/1:181:2,179:2:72:179:6401:-567.518,-50.8154,0	0/1:52:19,33:19:675:33:1175:-89.5123,0,-23.8567	1/1:416:10,406:10:356:406:14563:-1278.9,-106.062,0	1/1:239:20,219:20:716:219:7851:-658.373,-30.2288,0	1/1:128:6,122:6:216:122:4361:-375.986,-27.8782,0	1/1:4:0,4:0:0:4:140:-12.8831,-1.20412,0	1/1:11:0,11:0:0:11:396:-35.7877,-3.31133,0	1/1:4:0,4:0:0:4:144:-13.2414,-1.20412,0	0/1:2:1,1:1:36:1:36:-2.97671,0,-1.77147	1/1:16:1,15:1:36:15:536:-42.4216,-2.53761,0	0/1:283:97,186:97:3473:186:6654:-509.18,0,-110.912	1/1:297:8,289:8:288:289:10355:-903.384,-70.2077,0	0/1:45:15,30:15:540:30:1080:-81.8242,0,-15.5772	1/1:5:1,4:1:36:4:144:-11.8441,-0.107773,0	1/1:196:18,178:18:640:178:6354:-528.328,-21.5889,0	0/1:35:8,27:8:288:27:972:-73.9099,0,-5.92421	1/1:265:3,262:3:108:262:9404:-832.764,-74.1222,0	1/1:69:11,58:11:396:58:2088:-166.174,-0.128168,0	0/1:75:23,52:23:816:52:1855:-143.777,0,-23.9457	1/1:174:7,167:7:252:167:5971:-516.754,-36.566,0	1/1:195:6,189:6:212:189:6792:-593.953,-46.1437,0	1/1:256:11,245:11:392:245:8752:-763.276,-59.8093,0	1/1:168:2,166:2:72:166:5932:-526.64,-46.7222,0	1/1:196:18,177:18:644:177:6326:-526.205,-19.5199,0	1/1:217:7,210:7:252:210:7529:-656.217,-52.2631,0	1/1:11:0,11:0:0:11:396:-35.7916,-3.31133,0	1/1:233:6,227:6:212:227:8146:-715.147,-60.3067,0	1/1:57:1,56:1:36:56:2012:-179.18,-15.9603,0	1/1:32:2,30:2:72:30:1076:-91.3361,-5.21318,0	1/1:143:6,137:6:212:137:4897:-425.386,-30.1446,0	1/1:68:1,67:1:36:67:2394:-210.024,-18.0965,0	1/1:9:0,9:0:0:9:324:-29.3637,-2.70927,0	1/1:28:0,28:0:0:28:1008:-90.5428,-8.42884,0	1/1:104:11,93:11:388:93:3328:-275.816,-10.272,0	0/1:158:53,105:53:1908:105:3764:-286.079,0,-63.7819	1/1:7:0,7:0:0:7:252:-22.9041,-2.10721,0	0/1:310:76,234:76:2732:234:8391:-655.321,0,-59.7807	1/1:246:10,236:10:360:236:8455:-736.251,-56.976,0	1/1:138:12,126:12:428:126:4524:-381.087,-17.4778,0	1/1:103:7,96:7:248:96:3429:-290.799,-16.6512,0	1/1:208:4,204:4:144:204:7300:-644.983,-56.078,0	1/1:82:9,73:9:309:73:2616:-214.434,-7.6396,0	0/1:20:8,12:8:288:12:432:-32.988,0,-11.1334	1/1:74:2,72:2:72:72:2580:-227.275,-18.6895,0	1/1:135:18,117:18:633:117:4196:-339.067,-4.9391,0	0/1:30:12,18:12:428:18:648:-48.173,0,-17.5882	1/1:34:2,32:2:72:32:1152:-100.209,-7.01765,0	0/1:111:27,84:27:968:84:2996:-232.287,0,-22.8714	1/1:176:5,171:5:180:171:6117:-536.676,-42.9157,0	0/1:234:68,166:68:2448:166:5945:-461.749,0,-72.4146	1/1:162:3,159:3:104:159:5716:-502.249,-41.8961,0	0/1:187:39,148:39:1404:148:5297:-417.733,0,-24.8763	0/1:10:3,7:3:108:7:252:-19.8938,0,-3.89232	1/1:112:12,100:12:428:100:3583:-295.026,-9.08102,0	1/1:144:6,138:6:201:138:4929:-430.791,-33.1449,0	1/1:307:13,294:13:468:294:10541:-911.302,-65.8529,0	0/1:124:24,100:24:864:100:3588:-281.16,0,-10.8096	0/1:104:21,83:21:756:83:2984:-234.94,0,-12.2698	0/1:87:19,68:19:680:68:2444:-188.644,0,-10.8512	0/1:151:47,104:47:1692:104:3728:-287.059,0,-49.6617	0/1:50:8,42:8:288:42:1512:-118.565,0,-1.58422	0/1:114:38,76:38:1364:76:2732:-209.225,0,-43.2296	0/1:98:31,67:31:1108:67:2404:-185.623,0,-33.6571	0/1:48:19,29:19:684:29:1035:-77.2575,0,-25.7742	0/1:118:47,71:47:1680:71:2556:-191.335,0,-64.664	0/1:94:33,61:33:1184:61:2183:-167.013,0,-38.2016	0/1:153:40,113:40:1440:113:4064:-316.697,0,-35.8004	0/1:104:39,65:39:1396:65:2340:-177.13,0,-46.331
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chr11	27315114	.	G	A	18253.7	PASS	AB=0.369447;ABP=572.831;AC=44;AF=0.236559;AN=186;AO=1438;CIGAR=1X;DP=9592;DPB=9592;DPRA=0.971971;EPP=3099.58;EPPR=17605.1;GTI=3;LEN=1;MEANALT=1.03704;MQM=40.2163;MQMR=31.1958;NS=93;NUMALT=1;ODDS=2.00664;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51522;QR=286729;RO=8150;RPL=4;RPP=3090.94;RPPR=186.56;RPR=1434;RUN=1;SAF=1;SAP=3116.91;SAR=1437;SRF=3649;SRP=196.419;SRR=4501;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:69:68,1:68:2394:1:36:0,-17.2226,-166.801	0/0:160:158,2:158:5607:2:72:0,-41.7284,-374.624	0/1:261:141,119:141:4979:119:4272:-278.996,0,-276.774	0/1:168:112,56:112:3931:56:2012:-125.088,0,-250.917	0/1:44:29,15:29:1032:15:540:-33.7448,0,-63.9436	0/1:47:27,20:27:950:20:720:-47.33,0,-53.4275	0/0:125:125,0:125:4381:0:0:0,-37.6287,-336.917	0/0:219:219,0:219:7770:0:0:0,-65.9256,-530.889	0/1:94:59,35:59:2058:35:1250:-75.9444,0,-112.216	0/0:113:113,0:113:4006:0:0:0,-34.0164,-303.422	0/0:98:98,0:98:3420:0:0:0,-29.5009,-258.556	0/1:100:64,36:64:2211:36:1285:-77.7298,0,-125.102	0/1:93:56,37:56:1987:37:1328:-84.0884,0,-107.392	0/0:117:117,0:117:4113:0:0:0,-35.2205,-302.922	0/1:99:66,32:66:2317:32:1152:-69.892,0,-148.578	0/0:114:114,0:114:3960:0:0:0,-34.3174,-292.079	0/1:64:45,19:45:1582:19:676:-37.4231,0,-88.4888	0/1:63:47,16:47:1663:16:568:-29.6828,0,-95.2532	0/0:82:82,0:82:2878:0:0:0,-24.6845,-198.187	0/1:104:75,29:75:2643:29:1044:-60.42,0,-173.495	0/0:141:137,4:137:4795:4:144:0,-29.6636,-335.106	0/1:51:25,26:25:875:26:936:-66.6313,0,-55.1151	0/1:69:43,26:43:1503:26:932:-60.0628,0,-95.9589	0/0:80:80,0:80:2826:0:0:0,-24.0824,-205.306	0/0:122:122,0:122:4296:0:0:0,-36.7257,-321.346	0/1:187:117,70:117:4170:70:2495:-163.703,0,-277.339	0/0:262:261,1:261:9139:1:36:0,-75.2767,-666.987	0/1:50:39,11:39:1386:11:392:-19.2596,0,-84.311	0/0:234:233,1:233:8186:1:36:0,-66.9049,-662.618	0/1:143:79,64:79:2802:64:2292:-152.916,0,-160.502	0/0:96:95,1:95:3331:1:36:0,-25.3962,-253.947	0/0:5:5,0:5:180:0:0:0,-1.50515,-11.8205	0/0:8:8,0:8:280:0:0:0,-2.40824,-19.318	0/0:3:3,0:3:108:0:0:0,-0.90309,-6.38082	0/1:6:5,1:5:162:1:36:-1.58142,0,-10.5577	0/0:11:11,0:11:384:0:0:0,-3.31133,-26.721	0/0:286:286,0:286:10065:0:0:0,-86.0946,-803.57	0/1:59:41,18:41:1455:18:648:-37.7704,0,-87.4446	0/0:96:96,0:96:3331:0:0:0,-28.8989,-232.267	.:.:.:.:.:.:.:.	0/1:124:91,33:91:3211:33:1180:-64.2282,0,-197.35	0/0:61:61,0:61:2123:0:0:0,-18.3628,-157.818	0/0:150:150,0:150:5318:0:0:0,-45.1545,-394.903	0/0:86:86,0:86:2988:0:0:0,-25.8886,-232.982	0/0:88:88,0:88:3122:0:0:0,-26.4906,-237.405	0/1:79:54,25:54:1899:25:896:-55.3114,0,-130.621	0/1:99:57,42:57:1992:42:1504:-97.0078,0,-113.509	0/0:138:138,0:138:4891:0:0:0,-41.5421,-370.813	0/0:94:94,0:94:3292:0:0:0,-28.2968,-252.518	0/1:153:110,43:110:3905:43:1540:-86.2348,0,-253.86	0/0:166:166,0:166:5862:0:0:0,-49.971,-464.388	0/0:6:6,0:6:212:0:0:0,-1.80618,-16.7209	0/0:105:103,2:103:3633:2:72:0,-25.1717,-241.36	0/0:61:61,0:61:2143:0:0:0,-18.3628,-175.713	0/1:9:6,3:6:216:3:108:-6.77601,0,-10.7308	0/0:171:171,0:171:6025:0:0:0,-51.4761,-445.452	0/1:45:30,15:30:1048:15:532:-33.1695,0,-66.7982	0/0:1:1,0:1:32:0:0:0,-0.30103,-2.78773	0/0:14:14,0:14:500:0:0:0,-4.21442,-41.2153	0/1:100:52,48:52:1817:48:1724:-118.044,0,-102.215	0/1:109:75,34:75:2638:34:1209:-72.891,0,-172.073	0/0:1:1,0:1:32:0:0:0,-0.30103,-2.94622	0/1:120:69,51:69:2407:51:1813:-122.409,0,-159.391	0/0:229:229,0:229:8058:0:0:0,-68.9359,-621.633	0/1:70:48,22:48:1691:22:792:-47.6723,0,-101.281	0/1:80:55,25:55:1925:25:892:-54.0776,0,-126.071	0/0:130:129,1:129:4586:1:36:0,-35.6312,-349.525	0/0:143:142,0:142:5019:0:0:0,-42.7463,-388.964	0/1:62:37,25:37:1249:25:900:-59.4076,0,-74.7967	0/0:124:124,0:124:4381:0:0:0,-37.3277,-293.924	0/1:81:56,25:56:1978:25:891:-54.1331,0,-134.975	0/1:19:11,8:11:383:8:288:-19.5644,0,-22.8504	0/0:110:110,0:110:3859:0:0:0,-33.1133,-274.884	0/1:83:49,34:49:1744:34:1220:-77.7217,0,-97.4176	0/0:163:162,0:162:5696:0:0:0,-48.7669,-420.411	0/1:113:60,53:60:2099:53:1904:-132.928,0,-128.891	0/1:75:46,29:46:1631:29:1032:-66.6873,0,-91.9893	0/1:142:89,53:89:3142:53:1904:-119.383,0,-176.289	0/1:7:5,2:5:171:2:72:-4.32923,0,-10.5632	0/1:95:61,34:61:2150:34:1216:-76.8197,0,-131.422	0/0:161:161,0:161:5706:0:0:0,-48.4658,-403.506	0/0:235:233,2:233:8161:2:72:0,-64.0869,-621.843	0/1:85:57,28:57:1989:28:999:-61.6367,0,-127.273	0/0:111:111,0:111:3872:0:0:0,-33.4143,-299.175	0/0:135:135,0:135:4738:0:0:0,-40.639,-361.138	0/0:222:221,1:221:7804:1:36:0,-63.326,-588.67	0/0:66:66,0:66:2338:0:0:0,-19.868,-163.587	0/1:76:51,25:51:1745:25:900:-54.0624,0,-101.063	0/1:79:49,30:49:1716:30:1076:-66.9376,0,-95.4892	0/1:61:40,21:40:1409:21:756:-47.018,0,-85.4776	0/1:112:65,47:65:2297:47:1688:-111.504,0,-136.073	0/1:69:32,37:32:1121:37:1332:-94.8972,0,-64.1702	0/0:156:156,0:156:5453:0:0:0,-46.9607,-424.972	0/0:175:175,0:175:6156:0:0:0,-52.6802,-468.533
chr11	27325387	.	C	A	30615.9	PASS	AB=0.538577;ABP=46.0675;AC=49;AF=0.260638;AN=188;AO=1801;CIGAR=1X;DP=6928;DPB=6928;DPRA=0.909445;EPP=3913.83;EPPR=11120.9;GTI=2;LEN=1;MEANALT=1.02;MQM=59.5908;MQMR=59.7342;NS=94;NUMALT=1;ODDS=0.479869;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63928;QR=182904;RO=5120;RPL=0;RPP=3913.83;RPPR=11120.9;RPR=1801;RUN=1;SAF=1801;SAP=3913.83;SAR=0;SRF=5120;SRP=11120.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.872	0/0:57:56,1:56:1989:1:36:0,-13.5641,-175.687	0/1:106:48,58:48:1720:58:2050:-152.806,0,-123.128	0/1:132:67,65:67:2380:65:2303:-167.783,0,-174.719	0/1:56:16,40:16:564:40:1417:-110.958,0,-34.2326	0/1:34:16,18:16:564:18:644:-47.9941,0,-40.8553	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.865	0/0:100:99,0:99:3520:0:0:0,-29.802,-316.644	0/1:100:39,61:39:1396:61:2188:-167.034,0,-95.765	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.229	0/0:41:41,0:41:1456:0:0:0,-12.3422,-131.316	0/1:65:30,35:30:1063:35:1241:-92.4042,0,-76.4134	0/1:64:31,33:31:1095:33:1184:-87.5779,0,-79.5861	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.808	0/1:63:32,31:32:1152:31:1070:-77.6364,0,-85.0183	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.193	0/1:39:18,21:18:644:21:733:-54.5413,0,-46.5504	0/1:46:16,30:16:576:30:1068:-82.5833,0,-38.3209	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.4946	0/1:85:48,37:48:1712:37:1320:-93.5144,0,-128.776	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.222	0/1:274:63,211:63:2256:211:7461:-589.041,0,-120.811	0/1:129:55,74:55:1976:74:2600:-195.402,0,-139.207	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.675	0/0:96:96,0:96:3416:0:0:0,-28.8989,-307.648	0/1:198:106,92:106:3784:92:3243:-232.412,0,-281.145	0/0:181:181,0:181:6464:0:0:0,-54.4864,-581.722	0/1:33:19,14:19:684:14:489:-34.4003,0,-51.9563	0/0:188:188,0:188:6748:0:0:0,-56.5936,-607.383	0/1:98:52,46:52:1868:46:1656:-119.656,0,-138.889	0/0:78:78,0:78:2780:0:0:0,-23.4803,-250.425	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:13:13,0:13:456:0:0:0,-3.91339,-41.3686	0/1:10:6,4:6:204:4:144:-10.3033,0,-15.6831	1/1:5:0,5:0:0:5:176:-16.1767,-1.50515,0	0/1:8:7,1:7:252:1:36:-1.18633,0,-20.6139	0/0:146:146,0:146:5216:0:0:0,-43.9504,-469.574	0/1:168:70,93:70:2492:93:3311:-248.789,0,-175.113	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:68:38,30:38:1360:30:1076:-76.6782,0,-102.212	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:150:150,0:150:5337:0:0:0,-45.1545,-480.335	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.598	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.582	0/1:104:59,45:59:2104:45:1614:-114.233,0,-158.319	0/1:72:46,26:46:1636:26:920:-61.4265,0,-125.843	0/0:160:160,0:160:5724:0:0:0,-48.1648,-514.898	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.752	0/1:59:29,30:29:1036:30:1080:-79.7454,0,-75.5654	0/0:152:152,0:152:5432:0:0:0,-45.7566,-488.981	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.349	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.296	0/1:8:7,1:7:252:1:32:-0.791073,0,-20.6169	0/0:85:85,0:85:3028:0:0:0,-25.5875,-272.725	0/1:47:19,28:19:684:28:974:-73.7475,0,-47.7396	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:88:38,50:38:1352:50:1800:-135.774,0,-95.4627	0/1:96:38,58:38:1356:58:2061:-156.855,0,-93.4369	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:97:53,44:53:1900:44:1576:-112.931,0,-142.076	0/0:128:127,1:127:4564:1:36:0,-34.9336,-407.314	0/1:29:8,21:8:288:21:752:-59.2636,0,-17.5375	0/1:45:29,16:29:1036:16:543:-35.6373,0,-80.0006	0/0:120:120,0:120:4292:0:0:0,-36.1236,-386.436	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.057	0/1:30:16,14:16:572:14:500:-36.194,0,-42.7825	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:28:17,11:17:608:11:396:-27.5516,0,-46.6232	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	0/0:132:131,0:131:4668:0:0:0,-39.4349,-419.786	0/1:65:34,31:34:1220:31:1116:-81.1847,0,-90.5365	0/0:147:147,0:147:5224:0:0:0,-44.2514,-470.275	0/1:90:44,46:44:1572:46:1644:-121.149,0,-114.677	0/1:151:63,88:63:2256:88:3113:-234.906,0,-157.827	0/1:57:29,28:29:1040:28:966:-70.077,0,-76.7557	0/1:12:7,5:7:252:5:180:-12.9314,0,-19.4166	0/1:65:32,33:32:1144:33:1173:-86.2864,0,-83.698	0/0:98:98,0:98:3500:0:0:0,-29.5009,-315.198	0/0:167:167,0:167:5980:0:0:0,-50.272,-538.252	0/1:57:25,32:25:888:32:1133:-85.1109,0,-63.078	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.404	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.65	0/0:93:93,0:93:3316:0:0:0,-27.9958,-298.648	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:78:36,42:36:1284:42:1496:-111.43,0,-92.3764	0/1:65:29,36:29:1032:36:1280:-95.9181,0,-73.6222	0/1:37:17,20:17:608:20:712:-53.2621,0,-43.9139	0/1:77:39,38:39:1396:38:1353:-98.8809,0,-102.755	0/1:72:22,50:22:788:50:1780:-138.809,0,-49.5706	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.899	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.441
chr11	27325511	.	GCG	ACA,GCA	154411	PASS	AB=0.469944,0.528186;ABP=32.38,28.8388;AC=141,47;AF=0.75,0.25;AN=188;AO=5317,1988;CIGAR=1X1M1X,2M1X;DP=7317;DPB=7317.33;DPRA=0,1.34899;EPP=11548.7,4319.9;EPPR=0;GTI=0;LEN=3,1;MEANALT=1.70213,2.10909;MQM=59.8132,59.9648;MQMR=0;NS=94;NUMALT=2;ODDS=2.28229;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=187139,71095;QR=0;RO=0;RPL=1,0;RPP=11540,4319.9;RPPR=0;RPR=5316,1988;RUN=1,1;SAF=1,0;SAP=11540,4319.9;SAR=5316,1988;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17,0:0:0:17,0:591,0:-53.5125,-5.11751,0,-53.5125,-5.11751,-53.5125	1/1:38:0,38,0:0:0:38,0:1330,0:-119.998,-11.4391,0,-119.998,-11.4391,-119.998	1/2:133:0,56,75:0:0:56,75:1996,2692:-382.384,-219.683,-202.826,-162.794,0,-140.216	1/2:223:0,120,103:0:0:120,103:4249,3694:-647.755,-301.655,-265.531,-346.456,0,-315.45	1/2:43:0,18,25:0:0:18,25:648,900:-126.666,-73.7953,-68.3767,-53.2302,0,-45.7045	1/2:13:0,4,9:0:0:4,9:129,324:-37.1862,-26.7966,-25.5925,-10.7235,0,-8.01427	1/1:44:0,44,0:0:0:44,0:1558,0:-140.506,-13.2453,0,-140.506,-13.2453,-140.506	1/1:174:0,174,0:0:0:174,0:6088,0:-548.024,-52.3792,0,-548.024,-52.3792,-548.024	1/2:37:0,19,18:0:0:19,18:673,635:-106.882,-52.0584,-46.3389,-55.1771,0,-49.7585	1/1:58:0,56,2:0:0:56,2:1982,72:-178.289,-16.8577,0,-172.414,-10.623,-171.812	1/1:27:0,27,0:0:0:27,0:958,0:-86.5324,-8.12781,0,-86.5324,-8.12781,-86.5324	1/2:79:0,41,38:0:0:41,38:1422,1349:-225.786,-110.266,-97.9236,-115.871,0,-104.432	1/2:57:0,18,39:0:0:18,39:646,1400:-167.252,-114.559,-109.14,-53.0519,0,-41.3117	1/1:41:0,40,0:0:0:40,0:1383,0:-124.545,-12.0412,0,-124.545,-12.0412,-124.545	1/2:53:0,26,27:0:0:26,27:903,972:-153.071,-79.6701,-71.8433,-73.7538,0,-65.626	1/1:42:0,42,0:0:0:42,0:1488,0:-134.141,-12.6433,0,-134.141,-12.6433,-134.141	1/2:27:0,10,17:0:0:10,17:357,612:-78.9692,-50.2959,-47.2856,-29.0282,0,-23.9107	1/2:35:0,17,18:0:0:17,18:593,639:-100.646,-52.4197,-47.3022,-48.5776,0,-43.1591	1/1:20:0,20,0:0:0:20,0:701,0:-63.4133,-6.0206,0,-63.4133,-6.0206,-63.4133	1/2:140:0,62,78:0:0:62,78:2190,2804:-407.375,-229.033,-210.369,-178.699,0,-155.218	1/1:80:0,80,0:0:0:80,0:2824,0:-254.398,-24.0824,0,-254.398,-24.0824,-254.398	1/2:132:0,40,92:0:0:40,92:1419,3299:-385.043,-269.433,-257.392,-115.966,0,-88.2709	1/2:38:0,15,23:0:0:15,23:530,828:-111.081,-67.9204,-63.405,-43.5166,0,-36.5929	1/1:34:0,34,0:0:0:34,0:1187,0:-107.132,-10.235,0,-107.132,-10.235,-107.132	1/1:41:0,41,0:0:0:41,0:1435,0:-129.439,-12.3422,0,-129.439,-12.3422,-129.439	1/2:230:0,121,109:0:0:121,109:4229,3916:-663.82,-319.819,-283.395,-344.355,0,-311.543	1/1:153:0,152,0:0:0:152,0:5378,0:-483.932,-45.7566,0,-483.932,-45.7566,-483.932	1/2:14:0,4,10:0:0:4,10:144,360:-41.4837,-29.734,-28.5299,-12.1095,0,-9.0992	1/1:313:0,312,1:0:0:312,1:11057,36:-994.551,-93.9214,0,-991.613,-90.6241,-991.312	1/2:140:0,58,82:0:0:58,82:2055,2940:-407.553,-240.149,-222.69,-167.76,0,-143.075	1/1:35:0,34,1:0:0:34,1:1185,36:-106.594,-10.235,0,-103.656,-6.93778,-103.355	1/2:8:0,2,6:0:0:2,6:64,216:-23.1305,-17.9843,-17.3823,-5.47604,0,-3.66986	1/1:7:0,7,0:0:0:7,0:247,0:-22.5729,-2.10721,0,-22.5729,-2.10721,-22.5729	1/2:11:0,6,5:0:0:6,5:206,180:-31.7642,-15.0469,-13.2407,-17.0696,0,-15.5644	1/2:7:0,1,6:0:0:1,6:36,216:-20.9217,-17.9843,-17.6833,-3.29724,0,-1.49106	1/1:14:0,14,0:0:0:14,0:495,0:-44.8842,-4.21442,0,-44.8842,-4.21442,-44.8842	1/1:148:0,147,0:0:0:147,0:5196,0:-467.419,-44.2514,0,-467.419,-44.2514,-467.419	1/2:116:0,72,44:0:0:72,44:2532,1584:-335.701,-129.606,-107.932,-206.452,0,-193.206	1/1:21:0,21,0:0:0:21,0:737,0:-66.6496,-6.32163,0,-66.6496,-6.32163,-66.6496	1/1:5:0,5,0:0:0:5,0:173,0:-15.9097,-1.50515,0,-15.9097,-1.50515,-15.9097	1/2:226:0,122,104:0:0:122,104:4320,3714:-655.029,-303.154,-266.428,-352.231,0,-320.924	1/1:19:0,19,0:0:0:19,0:661,0:-59.8108,-5.71957,0,-59.8108,-5.71957,-59.8108	1/1:167:0,166,1:0:0:166,1:5859,36:-527.061,-49.971,0,-524.123,-46.6737,-523.822	1/1:30:0,30,0:0:0:30,0:1037,0:-93.6336,-9.0309,0,-93.6336,-9.0309,-93.6336	1/1:34:0,34,0:0:0:34,0:1189,0:-107.313,-10.235,0,-107.313,-10.235,-107.313	1/2:74:0,43,30:0:0:43,30:1518,1067:-210.64,-87.028,-74.0837,-123.683,0,-114.652	1/2:141:0,57,84:0:0:57,84:1984,3016:-407.703,-246.384,-229.225,-161.671,0,-136.385	1/1:274:0,274,0:0:0:274,0:9609,0:-864.73,-82.4822,0,-864.73,-82.4822,-864.73	1/1:76:0,76,0:0:0:76,0:2698,0:-243.042,-22.8783,0,-243.042,-22.8783,-243.042	1/2:131:0,60,71:0:0:60,71:2091,2542:-377.698,-207.657,-189.595,-170.394,0,-149.021	1/1:83:0,82,0:0:0:82,0:2877,0:-258.805,-24.6845,0,-258.805,-24.6845,-258.805	1/1:6:0,6,0:0:0:6,0:214,0:-19.6078,-1.80618,0,-19.6078,-1.80618,-19.6078	1/1:116:0,115,0:0:0:115,0:4056,0:-364.952,-34.6185,0,-364.952,-34.6185,-364.952	1/1:68:0,68,0:0:0:68,0:2363,0:-212.926,-20.47,0,-212.926,-20.47,-212.926	1/2:16:0,13,3:0:0:13,3:453,108:-46.0012,-9.17208,-5.25869,-37.1868,0,-36.2837	1/1:149:0,146,3:0:0:146,3:5156,108:-463.817,-43.9504,0,-455.005,-34.7783,-454.102	1/2:15:0,9,6:0:0:9,6:321,216:-44.1499,-17.9843,-15.2751,-26.524,0,-24.7179	1/1:8:0,8,0:0:0:8,0: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chr11	27331121	.	TTTAT	TTTAA,ATTAA	158524	PASS	AB=0.487129,0.510912;ABP=8.15281,6.70679;AC=140,48;AF=0.744681,0.255319;AN=188;AO=5588,1830;CIGAR=4M1X,1X3M1X;DP=7441;DPB=7441.6;DPRA=80,1.07933;EPP=12137.2,3976.8;EPPR=18.2106;GTI=1;LEN=1,5;MEANALT=1.69892,2.08;MQM=58.8708,44.6765;MQMR=56.2857;NS=94;NUMALT=2;ODDS=1.30769;PAIRED=0,0;PAIREDR=0;PAO=0.5,1;PQA=18,36;PQR=18;PRO=0.5;QA=199927,64571;QR=203;RO=7;RPL=5588,1830;RPP=12137.2,3976.8;RPPR=18.2106;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12137.2,3976.8;SAR=5588,1830;SRF=0;SRP=18.2106;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/1:41:0,41,0:0:0:41,0:1468,0:-132.378,-12.3422,0,-132.378,-12.3422,-132.378	1/2:128:0,57,71:0:0:57,71:2028,2510:-367.65,-202.476,-185.318,-165.527,0,-144.154	1/2:222:0,115,107:0:0:115,107:4123,3745:-634.361,-298.506,-263.887,-336.206,0,-303.996	1/2:37:0,22,15:0:0:22,15:792,539:-108.2,-43.6629,-37.0402,-64.893,0,-60.3775	1/2:32:0,18,14:0:0:18,14:644,488:-91.7427,-39.2204,-33.8018,-52.8711,0,-48.6567	1/1:27:0,26,0:0:0:26,0:936,0:-84.062,-7.82678,0,-84.062,-7.82678,-84.062	1/1:86:0,85,0:0:0:85,0:3041,0:-273.194,-25.5876,0,-273.194,-25.5876,-273.194	1/2:146:1,64,81:1:30:64,81:2288,2851:-412.314,-226.067,-209.199,-184.202,0,-162.216	1/1:103:0,103,0:0:0:103,0:3688,0:-331.903,-31.0061,0,-331.903,-31.0061,-331.903	1/1:31:0,31,0:0:0:31,0:1112,0:-100.271,-9.33193,0,-100.271,-9.33193,-100.271	1/2:100:0,53,47:0:0:53,47:1885,1657:-287.136,-133.587,-117.633,-153.9,0,-139.752	1/2:85:0,43,42:0:0:43,42:1531,1482:-242.94,-118.175,-105.231,-125.115,0,-112.471	1/1:48:0,48,0:0:0:48,0:1728,0:-155.805,-14.4494,0,-155.805,-14.4494,-155.805	1/2:74:0,48,26:0:0:48,26:1724,926:-215.277,-74.716,-60.2666,-140.915,0,-133.088	1/1:52:0,52,0:0:0:52,0:1872,0:-168.714,-15.6536,0,-168.714,-15.6536,-168.714	1/2:29:0,14,15:0:0:14,15:504,533:-84.4324,-43.3046,-39.0901,-41.4837,0,-36.9682	1/2:45:0,18,27:0:0:18,27:648,956:-130.209,-77.3316,-71.9131,-53.2333,0,-45.1055	1/1:26:0,26,0:0:0:26,0:936,0:-84.5236,-7.82678,0,-84.5236,-7.82678,-84.5236	1/2:286:0,152,134:0:0:152,134:5437,4737:-822.171,-379.118,-333.361,-443.406,0,-403.068	1/1:197:0,197,0:0:0:197,0:7041,0:-633.632,-59.3029,0,-633.632,-59.3029,-633.632	1/2:58:0,20,38:0:0:20,38:716,1349:-165.965,-107.657,-101.636,-58.6623,0,-47.2231	1/2:130:0,52,78:0:0:52,78:1843,2751:-369.596,-219.558,-203.905,-150.389,0,-126.908	1/1:43:2,41,0:2:57:41,0:1472,0:-127.336,-7.53014,0,-127.939,-12.3422,-132.462	1/1:53:0,53,0:0:0:53,0:1904,0:-171.571,-15.9546,0,-171.571,-15.9546,-171.571	1/2:266:0,104,162:0:0:104,162:3713,5737:-758.971,-456.523,-425.216,-302.381,0,-253.614	1/1:286:0,284,0:0:0:284,0:10161,0:-913.741,-85.4925,0,-913.741,-85.4925,-913.741	1/2:43:0,27,16:0:0:27,16:972,573:-125.581,-46.3585,-38.2307,-79.5782,0,-74.7617	1/1:204:0,204,0:0:0:204,0:7290,0:-655.764,-61.4101,0,-655.764,-61.4101,-655.764	1/2:69:0,39,30:0:0:39,30:1385,1049:-197.289,-84.5062,-72.766,-113.132,0,-104.101	1/1:68:0,68,0:0:0:68,0:2428,0:-218.643,-20.47,0,-218.643,-20.47,-218.643	1/2:6:0,3,3:0:0:3,3:108,108:-17.7613,-8.945,-8.04191,-9.17208,0,-8.26899	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	2/2:1:0,0,1:0:0:0,1:0,30:-2.98924,-2.98924,-2.98924,-0.30103,-0.30103,0	1/2:7:0,3,4:0:0:3,4:108,138:-20.0431,-11.2572,-10.3541,-9.13507,0,-7.93095	1/1:5:0,5,0:0:0:5,0:176,0:-16.185,-1.50515,0,-16.185,-1.50515,-16.185	1/1:199:1,197,1:1:31:197,1:7058,36:-631.787,-56.8363,0,-629.206,-56.3996,-631.393	1/2:47:0,13,34:0:0:13,34:468,1196:-134.151,-96.0061,-92.0927,-38.5011,0,-28.2661	1/1:30:0,30,0:0:0:30,0:1076,0:-97.117,-9.0309,0,-97.117,-9.0309,-97.117	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:156:0,88,68:0:0:88,68:3152,2392:-448.539,-191.477,-164.986,-257.413,0,-236.943	1/1:28:0,28,0:0:0:28,0:1008,0:-90.9914,-8.42884,0,-90.9914,-8.42884,-90.9914	1/1:141:0,140,1:0:0:140,1:5015,28:-451.126,-42.1442,0,-448.915,-39.6538,-448.614	1/1:59:0,59,0:0:0:59,0:2108,0:-189.931,-17.7608,0,-189.931,-17.7608,-189.931	1/1:53:0,53,0:0:0:53,0:1889,0:-170.149,-15.9546,0,-170.149,-15.9546,-170.149	1/2:92:0,42,49:0:0:42,49:1493,1726:-258.935,-137.671,-125.028,-121.261,0,-106.51	1/2:86:0,51,35:0:0:51,35:1828,1225:-246.104,-97.0284,-81.6759,-149.423,0,-138.887	1/1:96:0,95,0:0:0:95,0:3367,0:-302.825,-28.5979,0,-302.825,-28.5979,-302.825	1/1:77:0,77,0:0:0:77,0:2764,0:-248.84,-23.1793,0,-248.84,-23.1793,-248.84	1/2:58:0,34,24:0:0:34,24:1220,827:-166.054,-66.5874,-56.3524,-99.8142,0,-92.5895	1/1:57:0,57,0:0:0:57,0:2035,0:-183.318,-17.1587,0,-183.318,-17.1587,-183.318	1/1:4:0,4,0:0:0:4,0:144,0:-13.3124,-1.20412,0,-13.3124,-1.20412,-13.3124	1/1:70:0,70,0:0:0:70,0:2484,0:-223.805,-21.0721,0,-223.805,-21.0721,-223.805	1/1:25:0,25,0:0:0:25,0:900,0:-81.243,-7.52575,0,-81.243,-7.52575,-81.243	1/2:6:0,1,5:0:0:1,5:36,177:-17.546,-14.607,-14.306,-3.29724,0,-1.79209	1/1:103:0,103,0:0:0:103,0:3676,0:-330.923,-31.0061,0,-330.923,-31.0061,-330.923	1/2:31:1,25,5:1:33:25,5:877,179:-82.5221,-11.7372,-6.8758,-68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chr11	27431741	.	ACC	CCC,CCA	141539	PASS	AB=0.428986,0.568406;ABP=154.132,143.233;AC=140,48;AF=0.744681,0.255319;AN=188;AO=4763,1976;CIGAR=1X2M,1X1M1X;DP=6767;DPB=6768;DPRA=0,1.25822;EPP=10345.7,4293.84;EPPR=22.5536;GTI=1;LEN=1,3;MEANALT=1.79787,2.22807;MQM=59.7846,59.8295;MQMR=60;NS=94;NUMALT=2;ODDS=0.92219;PAIRED=0,0;PAIREDR=0;PAO=0.5,2;PQA=0,72;PQR=0;PRO=0.5;QA=170477,67264;QR=284;RO=9;RPL=0,0;RPP=10345.7,4293.84;RPPR=22.5536;RPR=4763,1976;RUN=1,1;SAF=4763,1976;SAP=10345.7,4293.84;SAR=0,0;SRF=9;SRP=22.5536;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20,0:0:0:20,0:712,0:-64.4048,-6.0206,0,-64.4048,-6.0206,-64.4048	1/1:109:0,108,0:0:0:108,0:3856,0:-346.858,-32.5112,0,-346.858,-32.5112,-346.858	1/2:72:0,34,38:0:0:34,38:1220,1298:-205.196,-105.675,-95.4398,-99.8718,0,-88.4326	1/2:91:1,51,39:1:28:51,39:1828,1327:-254.269,-105.487,-92.3522,-146.932,0,-137.409	1/2:70:1,31,38:1:36:31,38:1096,1277:-189.457,-100.486,-94.0919,-86.3208,0,-77.8192	1/2:39:0,16,23:0:0:16,23:576,785:-111.045,-64.0382,-59.2217,-47.3585,0,-40.4348	1/1:97:0,97,0:0:0:97,0:3460,0:-311.228,-29.1999,0,-311.228,-29.1999,-311.228	1/1:96:0,96,0:0:0:96,0:3448,0:-310.261,-28.8989,0,-310.261,-28.8989,-310.261	1/2:28:0,13,15:0:0:13,15:464,500:-78.6396,-40.8013,-36.8879,-38.1841,0,-33.6687	1/1:116:0,114,0:0:0:114,0:4068,0:-365.853,-34.3174,0,-365.853,-34.3174,-365.853	1/1:54:0,54,0:0:0:54,0:1932,0:-174.147,-16.2556,0,-174.147,-16.2556,-174.147	1/2:51:0,20,31:0:0:20,31:720,1090:-147.806,-89.0717,-83.0511,-59.0905,0,-49.7586	1/2:49:0,11,38:0:0:11,38:396,1283:-136.641,-104.324,-101.013,-32.6714,0,-21.2323	1/1:53:0,53,0:0:0:53,0:1892,0:-170.556,-15.9546,0,-170.556,-15.9546,-170.556	1/2:58:0,29,29:0:0:29,29:1036,986:-164.789,-80.3146,-71.5847,-84.8225,0,-76.0926	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7227,-9.0309,0,-96.7227,-9.0309,-96.7227	1/2:93:0,47,45:0:0:47,45:1688,1474:-256.829,-119.113,-104.965,-137.777,0,-124.231	1/2:67:0,24,43:0:0:24,43:860,1447:-187.719,-117.572,-110.348,-70.4971,0,-57.5528	1/1:37:0,37,0:0:0:37,0:1328,0:-119.768,-11.1381,0,-119.768,-11.1381,-119.768	1/2:119:0,63,56:0:0:63,56:2256,1918:-340.02,-156.031,-137.067,-184.338,0,-167.48	1/1:89:1,87,1:1:31:87,1:3108,36:-276.271,-23.7261,0,-273.635,-23.2273,-275.822	1/2:74:0,18,56:0:0:18,56:648,1951:-211.854,-158.978,-153.559,-53.2333,0,-36.3757	1/2:36:0,15,21:0:0:15,21:532,710:-101.243,-57.8929,-53.3774,-43.6976,0,-37.376	1/1:80:0,77,1:0:0:77,1:2756,36:-247.898,-23.1793,0,-244.961,-20.2419,-244.66	1/1:50:0,49,1:0:0:49,1:1754,36:-157.628,-14.7505,0,-154.691,-11.4532,-154.39	1/2:265:0,96,167:0:0:96,167:3440,5669:-740.113,-459.666,-430.767,-280.478,0,-230.206	1/1:189:0,185,2:0:0:185,2:6609,72:-594.359,-55.6906,0,-588.484,-49.7883,-587.882	1/2:24:0,7,17:0:0:7,17:252,584:-68.3311,-47.7644,-45.6572,-20.9217,0,-15.8042	1/1:213:0,213,0:0:0:213,0:7636,0:-686.996,-64.1194,0,-686.996,-64.1194,-686.996	1/2:98:0,43,55:0:0:43,55:1548,1823:-274.108,-147.786,-134.842,-126.669,0,-110.112	1/1:63:0,63,0:0:0:63,0:2256,0:-203.303,-18.9649,0,-203.303,-18.9649,-203.303	1/2:12:0,7,5:0:0:7,5:248,178:-35.0654,-14.8635,-12.7563,-20.557,0,-19.0518	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/2:25:0,6,19:0:0:6,19:216,648:-70.5438,-52.9148,-51.1086,-17.9843,0,-12.2648	1/2:10:0,6,4:0:0:6,4:216,139:-29.2804,-11.6484,-9.8422,-17.9843,0,-16.7802	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:125:1,122,1:1:21:122,1:4372,25:-391.473,-35.1682,0,-389.838,-34.8009,-391.125	1/2:175:0,77,98:0:0:77,98:2754,3355:-496.594,-272.601,-249.421,-224.344,0,-194.843	1/2:65:0,20,45:0:0:20,45:720,1455:-176.44,-117.68,-111.66,-59.1082,0,-45.5618	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:127:0,72,54:0:0:72,54:2576,1817:-357.337,-147.272,-125.597,-210.13,0,-193.874	1/1:34:0,34,0:0:0:34,0:1220,0:-110.089,-10.235,0,-110.089,-10.235,-110.089	1/1:109:0,108,0:0:0:108,0:3852,0:-346.555,-32.5112,0,-346.555,-32.5112,-346.555	1/1:39:0,39,0:0:0:39,0:1400,0:-126.299,-11.7402,0,-126.299,-11.7402,-126.299	1/1:42:0,42,0:0:0:42,0:1508,0:-135.787,-12.6433,0,-135.787,-12.6433,-135.787	1/1:44:0,44,0:0:0:44,0:1564,0:-141.051,-13.2453,0,-141.051,-13.2453,-141.051	1/2:80:0,39,41:0:0:39,41:1400,1333:-222.111,-107.895,-96.1545,-114.559,0,-102.217	1/1:185:1,184,0:1:36:184,0:6582,0:-588.67,-52.0923,0,-588.971,-55.3895,-591.909	1/1:85:1,83,1:1:34:83,1:2976,34:-264.709,-22.1886,0,-262.953,-22.9664,-265.41	1/2:126:0,58,68:0:0:58,68:2084,2358:-361.936,-192.005,-174.545,-170.284,0,-149.814	1/1:141:0,141,0:0:0:141,0:5056,0:-455.175,-42.4452,0,-455.175,-42.4452,-455.175	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:85:0,85,0:0:0:85,0:3044,0:-274.189,-25.5876,0,-274.189,-25.5876,-274.189	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/2:9:0,8,1:0:0:8,1:284,36:-26.0737,-2.93742,-0.529177,-23.1358,0,-22.8348	1/1:63:0,63,0:0:0:63,0:2260,0:-203.663,-18.9649,0,-203.663,-18.9649,-203.663	1/2:19:0,10,9:0:0:10,9:356,311:-54.6313,-25.6107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chr11	27431751	.	C	T	33573.6	PASS	AB=0.560721;ABP=113.239;AC=48;AF=0.255319;AN=188;AO=1943;CIGAR=1X;DP=6786;DPB=6786;DPRA=1.13032;EPP=4222.18;EPPR=10497.7;GTI=0;LEN=1;MEANALT=1.10909;MQM=59.8466;MQMR=59.7656;NS=94;NUMALT=1;ODDS=0.218802;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69371;QR=172675;RO=4833;RPL=0;RPP=4222.18;RPPR=10497.7;RPR=1943;RUN=1;SAF=1943;SAP=4222.18;SAR=0;SRF=4833;SRP=10497.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/0:109:109,0:109:3867:0:0:0,-32.8123,-348.209	0/1:73:36,37:36:1292:37:1320:-97.1268,0,-94.6086	0/1:88:50,38:50:1784:38:1364:-96.5701,0,-134.345	0/1:70:32,37:32:1148:37:1332:-99.1292,0,-82.5764	0/1:37:15,22:15:536:22:779:-59.294,0,-37.4367	0/0:99:99,0:99:3540:0:0:0,-29.802,-317.918	0/0:97:97,0:97:3468:0:0:0,-29.1999,-312.016	0/1:27:13,14:13:464:14:504:-37.5703,0,-33.9697	0/0:114:114,0:114:4075:0:0:0,-34.3174,-366.807	0/0:53:53,0:53:1899:0:0:0,-15.9546,-171.178	0/1:51:20,31:20:711:31:1107:-84.5821,0,-48.9608	0/1:51:13,38:13:468:38:1364:-107.708,0,-27.1071	0/0:53:53,0:53:1886:0:0:0,-15.9546,-170.006	0/1:59:29,29:29:1040:29:1040:-76.0948,0,-76.0933	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6008	0/1:92:47,44:47:1671:44:1580:-114.737,0,-122.915	0/1:66:23,43:23:820:43:1548:-119.745,0,-54.2545	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.886	0/1:119:65,54:65:2320:54:1936:-138.671,0,-173.238	0/0:88:87,1:87:3099:1:36:0,-22.8924,-274.783	0/1:72:18,54:18:640:54:1932:-152.482,0,-36.2552	0/1:35:15,20:15:536:20:720:-54.5927,0,-38.0388	0/0:81:81,0:81:2884:0:0:0,-24.3834,-259.778	0/0:50:49,1:49:1760:1:36:0,-11.4532,-154.719	0/1:259:99,159:99:3528:159:5704:-435.223,0,-239.639	0/0:193:190,2:190:6820:2:72:0,-51.3209,-606.829	0/1:24:7,17:7:252:17:595:-46.652,0,-15.8042	0/0:221:221,0:221:7896:0:0:0,-66.5276,-710.388	0/1:98:43,55:43:1536:55:1947:-146.005,0,-109.032	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/1:13:8,5:8:280:5:176:-12.2716,0,-21.6259	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:24:6,18:6:216:18:648:-51.419,0,-12.5658	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:127:127,0:127:4521:0:0:0,-38.2308,-406.92	0/1:177:80,97:80:2851:97:3451:-257.364,0,-202.361	0/1:68:23,45:23:824:45:1608:-124.537,0,-54.0133	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:125:71,54:71:2536:54:1925:-135.896,0,-190.858	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.851	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.208	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.934	0/0:42:42,0:42:1486:0:0:0,-12.6433,-133.805	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/1:80:39,41:39:1404:41:1460:-107.585,0,-102.577	0/0:186:185,0:185:6601:0:0:0,-55.6905,-593.619	0/0:86:84,1:84:3004:1:36:0,-23.2513,-267.891	0/1:125:57,68:57:2036:68:2413:-179.787,0,-145.884	0/0:142:142,0:142:5088:0:0:0,-42.7463,-458.054	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:87:87,0:87:3112:0:0:0,-26.1896,-280.306	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:10:8,2:8:284:2:60:-2.68796,0,-22.8931	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:18:9,9:9:324:9:320:-23.7156,0,-24.0873	0/0:18:16,0:16:572:0:0:0,-4.81648,-51.4539	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:56:30,26:30:1064:26:920:-66.1895,0,-79.214	0/1:109:44,65:44:1550:65:2319:-176.156,0,-106.593	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:140:63,77:63:2244:77:2741:-204.765,0,-160.08	0/0:164:158,6:158:5639:6:216:0,-29.5784,-487.738	0/1:85:44,41:44:1584:41:1452:-105.388,0,-117.264	0/1:49:20,29:20:720:29:1028:-78.0826,0,-49.4375	0/0:103:102,1:102:3660:1:32:0,-27.8068,-326.386	0/0:100:100,0:100:3574:0:0:0,-30.103,-321.862	0/1:33:6,27:6:212:27:959:-76.691,0,-9.49081	0/0:54:53,0:53:1904:0:0:0,-15.9546,-171.312	0/1:79:34,45:34:1224:45:1604:-120.866,0,-86.6857	0/1:22:15,7:15:532:7:252:-16.4063,0,-41.5904	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.602	0/1:82:26,56:26:932:56:2008:-156.309,0,-59.5098	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.113	0/1:114:51,63:51:1832:63:2260:-169.345,0,-130.843	0/1:110:51,59:51:1820:59:2103:-156.418,0,-130.963	0/1:64:32,32:32:1144:32:1139:-83.5525,0,-83.7704	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:81:36,45:36:1271:45:1608:-120.598,0,-90.2793	0/0:128:128,0:128:4599:0:0:0,-38.5318,-414.067	0/1:114:64,50:64:2296:50:1776:-125.764,0,-172.497	0/1:86:32,54:32:1148:54:1923:-147.458,0,-77.6068	0/0:44:43,1:43:1531:1:36:0,-9.64704,-134.484	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.384	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.118	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4007	0/1:67:23,44:23:812:44:1575:-121.872,0,-53.2143	0/1:52:28,24:28:995:24:856:-61.7075,0,-74.2105	0/1:61:21,40:21:752:40:1432:-110.812,0,-49.6388	0/1:93:34,59:34:1202:59:2107:-161.796,0,-80.4838	0/1:55:14,41:14:500:41:1472:-116.219,0,-28.7795	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.739	0/0:75:75,0:75:2658:0:0:0,-22.5772,-239.303
chr11	27445511	.	C	T	48090.2	PASS	AB=0.518297;ABP=6.90403;AC=138;AF=0.741935;AN=186;AO=2254;CIGAR=1X;DP=2905;DPB=2905;DPRA=15.9396;EPP=4793.83;EPPR=1397.15;GTI=6;LEN=1;MEANALT=1.01099;MQM=54.2937;MQMR=59.7538;NS=93;NUMALT=1;ODDS=1.06101;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80596;QR=23269;RO=650;RPL=2242;RPP=4793.83;RPPR=1397.15;RPR=12;RUN=1;SAF=2254;SAP=4897.51;SAR=0;SRF=650;SRP=1414.47;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1512:-136.008,-12.6433,0	1/1:21:0,21:0:0:21:752:-67.8291,-6.32163,0	0/1:47:27,20:27:972:20:697:-48.8396,0,-73.6461	0/1:78:45,33:45:1616:33:1184:-83.0126,0,-122.243	0/1:16:2,14:2:72:14:504:-40.8345,0,-2.02024	1/1:6:0,6:0:0:6:216:-19.7701,-1.80618,0	1/1:29:0,29:0:0:29:1040:-93.6917,-8.72987,0	1/1:68:0,68:0:0:68:2429:-217.953,-20.47,0	0/1:42:19,23:19:676:23:828:-62.1209,0,-48.5234	1/1:23:0,23:0:0:23:824:-74.3052,-6.92369,0	0/1:4:1,3:1:36:3:108:-8.86067,0,-2.39415	0/1:17:6,11:6:216:11:396:-30.3442,0,-14.6696	0/1:18:10,8:10:360:8:279:-19.9679,0,-27.3224	1/1:7:0,7:0:0:7:252:-22.797,-2.10721,0	0/1:17:9,8:9:324:8:284:-20.7608,0,-24.3883	1/1:11:0,11:0:0:11:392:-35.5402,-3.31133,0	0/1:4:3,1:3:108:1:36:-2.39045,0,-8.87105	0/1:7:3,4:3:108:4:144:-11.1927,0,-7.96796	1/1:6:0,6:0:0:6:207:-18.9495,-1.80618,0	0/1:75:33,42:33:1184:42:1493:-111.701,0,-84.2461	1/1:50:0,49:0:0:49:1756:-157.628,-14.7505,0	0/1:41:21,20:21:752:20:720:-52.3072,0,-55.664	0/1:47:14,33:14:504:33:1169:-90.7528,0,-31.5497	1/1:8:0,8:0:0:8:284:-25.8783,-2.40824,0	1/1:31:0,31:0:0:31:1112:-99.0147,-9.33193,0	0/1:162:56,106:56:2008:106:3777:-290.098,0,-132.222	1/1:82:0,82:0:0:82:2940:-264.436,-24.6845,0	0/1:17:14,3:14:504:3:108:-4.94728,0,-40.5806	1/1:87:0,87:0:0:87:3128:-280.844,-26.1896,0	0/1:28:13,15:13:455:15:540:-40.4573,0,-32.8527	1/1:31:0,31:0:0:31:1108:-99.9312,-9.33193,0	0/1:6:1,5:1:36:5:180:-14.7288,0,-1.78839	1/1:7:0,7:0:0:7:252:-23.0052,-2.10721,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:19:17,2:17:612:2:72:-1.11011,0,-49.6905	1/1:17:0,17:0:0:17:612:-55.3563,-5.11751,0	1/1:52:0,52:0:0:52:1872:-168.11,-15.6536,0	0/1:33:18,15:18:648:15:536:-38.5924,0,-48.7145	0/1:7:2,5:2:68:5:180:-14.4278,0,-4.3505	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	0/1:41:30,11:30:1057:11:392:-23.2428,0,-82.9356	1/1:4:0,4:0:0:4:144:-13.2999,-1.20412,0	1/1:116:0,116:0:0:116:4148:-372.871,-34.9195,0	1/1:10:0,10:0:0:10:360:-32.7106,-3.0103,0	1/1:9:0,9:0:0:9:324:-29.4755,-2.70927,0	1/1:54:0,54:0:0:54:1936:-174.227,-16.2556,0	0/1:36:11,25:11:392:25:900:-70.2972,0,-24.783	1/1:103:0,103:0:0:103:3666:-329.204,-31.0061,0	1/1:14:0,14:0:0:14:496:-44.9312,-4.21442,0	0/1:28:17,11:17:612:11:396:-27.514,0,-46.9846	1/1:20:0,20:0:0:20:712:-64.2978,-6.0206,0	1/1:6:0,6:0:0:6:216:-19.6657,-1.80618,0	1/1:33:0,33:0:0:33:1163:-104.765,-9.93399,0	1/1:8:0,8:0:0:8:284:-25.8678,-2.40824,0	.:.:.:.:.:.:.:.	1/1:44:0,44:0:0:44:1565:-140.689,-13.2453,0	0/1:11:4,7:4:144:7:252:-19.6939,0,-10.0023	1/1:11:0,11:0:0:11:387:-35.0949,-3.31133,0	1/1:15:0,15:0:0:15:540:-48.8861,-4.51545,0	0/1:16:10,6:10:360:6:216:-14.9536,0,-27.9244	0/1:32:14,18:14:504:18:644:-48.4544,0,-36.0651	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0717	0/1:67:40,27:40:1436:27:972:-67.5176,0,-109.369	1/1:143:0,143:0:0:143:5125:-460.359,-43.0473,0	0/1:14:7,7:7:252:7:252:-18.7908,0,-18.8145	0/1:20:10,10:10:360:10:360:-24.7977,0,-26.7237	1/1:98:1,97:1:32:97:3488:-310.587,-26.3016,0	1/1:38:0,38:0:0:38:1360:-122.327,-11.4391,0	0/1:5:1,4:1:36:4:144:-11.7948,0,-2.09312	1/1:13:0,13:0:0:13:453:-41.0448,-3.91339,0	0/1:19:10,9:10:360:9:320:-23.3944,0,-27.0247	1/1:6:0,6:0:0:6:216:-19.7701,-1.80618,0	1/1:43:0,43:0:0:43:1518:-136.669,-12.9443,0	0/1:34:19,15:19:680:15:525:-37.2959,0,-51.2941	1/1:48:0,48:0:0:48:1720:-154.826,-14.4494,0	0/1:47:23,24:23:820:24:845:-62.0368,0,-59.9225	0/1:38:4,34:4:144:34:1194:-96.112,0,-1.87448	0/1:24:12,12:12:432:12:432:-31.9038,0,-31.9965	0/1:9:4,5:4:144:5:180:-13.721,0,-10.6043	0/1:39:23,16:23:828:16:576:-40.3811,0,-63.1039	1/1:33:0,33:0:0:33:1168:-105.224,-9.93399,0	0/1:70:30,40:30:1067:40:1432:-107.723,0,-75.2658	0/1:25:14,11:14:500:11:396:-28.4095,0,-37.8071	1/1:7:0,7:0:0:7:252:-23.0052,-2.10721,0	1/1:7:0,7:0:0:7:252:-23.0052,-2.10721,0	1/1:23:0,23:0:0:23:828:-74.664,-6.92369,0	1/1:19:0,19:0:0:19:684:-61.8266,-5.71957,0	0/1:22:17,5:17:599:5:180:-9.91235,0,-47.6154	0/1:21:8,13:8:288:13:468:-36.0943,0,-19.9424	0/1:5:4,1:4:144:1:36:-2.08942,0,-11.8085	0/1:14:5,9:5:171:9:324:-25.1573,0,-11.5104	0/1:17:14,3:14:504:3:108:-4.93653,0,-40.5806	1/1:32:0,32:0:0:32:1152:-103.773,-9.63296,0	1/1:26:0,26:0:0:26:936:-84.3178,-7.82678,0
chr11	27495668	.	C	T	112746	PASS	AB=0.471552;ABP=27.4731;AC=141;AF=0.75;AN=188;AO=5382;CIGAR=1X;DP=7238;DPB=7238;DPRA=0;EPP=11689.9;EPPR=4020.24;GTI=0;LEN=1;MEANALT=1.02128;MQM=53.9866;MQMR=59.6268;NS=94;NUMALT=1;ODDS=3.61297;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=192640;QR=66203;RO=1854;RPL=0;RPP=11689.9;RPPR=4020.24;RPR=5382;RUN=1;SAF=5382;SAP=11689.9;SAR=0;SRF=1854;SRP=4028.92;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1861:-166.939,-15.6536,0	1/1:108:0,108:0:0:108:3867:-346.486,-32.5112,0	0/1:126:61,65:61:2188:65:2340:-171.829,0,-159.231	0/1:203:119,83:119:4245:83:2972:-206.231,0,-321.194	0/1:27:14,13:14:504:13:464:-33.7864,0,-37.5123	0/1:19:9,10:9:324:10:351:-26.1031,0,-23.778	1/1:65:0,65:0:0:65:2328:-209.46,-19.567,0	1/1:152:0,152:0:0:152:5441:-486.761,-45.7566,0	0/1:132:76,56:76:2716:56:2008:-140.072,0,-204.902	1/1:59:0,59:0:0:59:2116:-190.152,-17.7608,0	1/1:30:0,30:0:0:30:1071:-96.564,-9.0309,0	1/1:106:0,106:0:0:106:3808:-339.814,-31.9092,0	0/1:83:41,42:41:1443:42:1508:-110.564,0,-105.18	1/1:40:0,40:0:0:40:1413:-127.188,-12.0412,0	0/1:68:35,33:35:1244:33:1188:-86.3197,0,-91.6852	1/1:52:0,52:0:0:52:1856:-166.293,-15.6536,0	0/1:26:10,16:10:356:16:576:-44.217,0,-24.5545	0/1:34:15,19:15:536:19:684:-51.1252,0,-38.3374	1/1:30:0,30:0:0:30:1076:-95.8832,-9.0309,0	0/1:192:105,87:105:3740:87:3124:-222.635,0,-278.997	1/1:141:0,141:0:0:141:5054:-452.159,-42.4452,0	0/1:50:34,16:34:1216:16:576:-37.1089,0,-94.6932	0/1:98:53,45:53:1900:45:1616:-115.681,0,-141.686	1/1:48:0,48:0:0:48:1709:-153.626,-14.4494,0	1/1:40:0,40:0:0:40:1432:-128.801,-12.0412,0	0/1:286:145,141:145:5175:141:5048:-367.622,0,-379.586	1/1:204:0,204:0:0:204:7315:-655.301,-61.4101,0	0/1:30:22,8:22:767:8:288:-17.1993,0,-60.3121	1/1:207:2,205:2:72:205:7343:-653.26,-55.4765,0	0/1:88:31,57:31:1112:57:2048:-157.838,0,-72.8734	1/1:119:3,116:3:108:116:4151:-363.229,-25.7474,0	0/1:7:2,5:2:72:5:176:-14.0572,0,-4.72951	1/1:22:0,22:0:0:22:788:-71.146,-6.62266,0	0/1:16:7,9:7:252:9:324:-24.6096,0,-18.1959	0/1:8:4,4:4:144:4:144:-10.8719,0,-10.9054	1/1:11:0,11:0:0:11:396:-35.8303,-3.31133,0	1/1:151:0,151:0:0:151:5419:-487.333,-45.4555,0	0/1:54:26,28:26:932:28:999:-73.8355,0,-67.9386	0/1:50:25,25:25:896:25:896:-65.6669,0,-65.839	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:83:35,48:35:1252:48:1720:-129.42,0,-87.9885	1/1:21:1,20:1:36:20:716:-60.9543,-2.72336,0	1/1:67:0,67:0:0:67:2382:-214.095,-20.169,0	1/1:51:0,51:0:0:51:1823:-163.35,-15.3525,0	1/1:51:0,51:0:0:51:1816:-162.878,-15.3525,0	1/1:78:0,78:0:0:78:2792:-251.248,-23.4803,0	0/1:85:37,48:37:1316:48:1728:-128.972,0,-93.1356	1/1:150:1,149:1:36:149:5302:-471.261,-41.5562,0	1/1:53:0,53:0:0:53:1892:-170.367,-15.9546,0	0/1:126:63,63:63:2268:63:2241:-163.707,0,-166.452	1/1:112:1,111:1:36:111:3980:-354.204,-30.1171,0	1/1:8:0,8:0:0:8:284:-25.8382,-2.40824,0	1/1:103:0,103:0:0:103:3704:-331.535,-31.0061,0	1/1:38:0,38:0:0:38:1364:-122.562,-11.4391,0	0/1:9:7,2:7:248:2:72:-4.11026,0,-19.9549	1/1:118:0,118:0:0:118:4224:-379.251,-35.5215,0	0/1:57:32,25:32:1132:25:896:-62.6817,0,-85.0223	1/1:9:0,9:0:0:9:324:-29.4962,-2.70927,0	1/1:10:0,10:0:0:10:351:-31.9073,-3.0103,0	0/1:74:53,21:53:1904:21:756:-45.9941,0,-149.329	0/1:61:29,32:29:1040:32:1148:-85.1072,0,-75.5515	0/1:6:5,1:5:180:1:36:-1.69652,0,-14.7412	0/1:164:92,72:92:3291:72:2584:-183.202,0,-247.027	1/1:128:2,126:2:68:126:4467:-394.082,-32.0741,0	0/1:73:41,32:41:1468:32:1139:-80.5487,0,-110.427	0/1:75:40,35:40:1419:35:1256:-89.5795,0,-105.424	1/1:168:1,167:1:36:167:5988:-534.415,-46.9748,0	1/1:103:1,102:1:36:102:3656:-323.891,-27.4078,0	0/1:37:21,16:21:752:16:572:-40.3527,0,-56.8543	1/1:76:0,76:0:0:76:2736:-245.364,-22.8783,0	0/1:25:15,10:15:536:10:360:-25.208,0,-41.0487	0/1:28:10,18:10:356:18:633:-48.8118,0,-23.9524	1/1:57:2,55:2:72:55:1964:-169.333,-10.322,0	0/1:67:30,37:30:1064:37:1331:-99.382,0,-75.8945	1/1:176:0,176:0:0:176:6264:-561.925,-52.9813,0	0/1:162:71,91:71:2533:91:3251:-243.326,0,-179.446	0/1:55:38,17:38:1368:17:608:-38.361,0,-106.864	0/1:83:42,41:42:1500:41:1455:-105.152,0,-110.28	0/1:21:13,8:13:468:8:280:-19.1536,0,-35.9795	0/1:130:63,67:63:2256:67:2399:-176.252,0,-164.164	1/1:109:0,109:0:0:109:3897:-348.888,-32.8123,0	0/1:168:84,83:84:3012:83:2963:-215.816,0,-220.587	0/1:35:21,14:21:743:14:504:-35.1268,0,-56.6549	1/1:54:0,54:0:0:54:1944:-174.858,-16.2556,0	1/1:59:0,59:0:0:59:2112:-189.934,-17.7608,0	1/1:109:2,107:2:72:107:3848:-337.874,-25.9755,0	1/1:20:0,20:0:0:20:718:-63.4647,-6.0206,0	0/1:52:33,19:33:1175:19:680:-45.7249,0,-90.3988	0/1:63:40,23:40:1436:23:824:-55.3433,0,-110.571	0/1:19:7,12:7:248:12:428:-32.9604,0,-16.94	0/1:48:24,24:24:848:24:855:-62.5648,0,-62.1594	0/1:77:57,20:57:2020:20:703:-39.7982,0,-158.892	1/1:83:0,83:0:0:83:2980:-267.343,-24.9855,0	1/1:108:1,107:1:36:107:3844:-341.641,-28.913,0
chr11	27500560	.	C	T	50443.9	PASS	AB=0.530224;ABP=36.3503;AC=48;AF=0.255319;AN=188;AO=2259;CIGAR=1X;DP=8980;DPB=8980;DPRA=1.23847;EPP=4908.37;EPPR=14536.7;GTI=0;LEN=1;MEANALT=1.08333;MQM=59.9548;MQMR=59.9926;NS=94;NUMALT=1;ODDS=5.8038;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79376;QR=236125;RO=6713;RPL=1330;RPP=157.581;RPPR=221.044;RPR=929;RUN=1;SAF=1330;SAP=157.581;SAR=929;SRF=3772;SRP=226.388;SRR=2941;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.323	0/0:77:77,0:77:2719:0:0:0,-23.1793,-244.952	0/1:169:85,84:85:2986:84:3004:-219.718,0,-218.098	0/1:206:78,127:78:2770:127:4454:-338.966,0,-187.47	0/1:62:18,44:18:635:44:1557:-121.756,0,-38.8131	0/1:67:20,47:20:720:47:1645:-127.909,0,-44.9598	0/0:121:121,0:121:4260:0:0:0,-36.4246,-383.583	0/0:120:118,2:118:4164:2:72:0,-29.2869,-368.109	0/1:149:69,79:69:2428:79:2778:-205.351,0,-173.863	0/0:100:100,0:100:3522:0:0:0,-30.103,-317.188	0/0:96:96,0:96:3276:0:0:0,-28.8989,-294.9	0/0:164:163,1:163:5686:1:36:0,-45.7706,-508.267	0/1:124:62,62:62:2168:62:2149:-156.348,0,-158.055	0/0:130:130,0:130:4538:0:0:0,-39.1339,-408.596	0/1:111:41,70:41:1460:70:2476:-189.678,0,-98.2817	0/0:92:90,2:90:3112:2:68:0,-21.2371,-273.849	0/1:72:39,33:39:1354:33:1158:-82.8517,0,-100.48	0/1:48:24,24:24:841:24:825:-60.1138,0,-61.5569	0/0:77:77,0:77:2708:0:0:0,-23.1793,-243.956	0/1:102:41,61:41:1448:61:2158:-163.781,0,-99.9081	0/0:179:177,1:177:6200:1:36:0,-50.3449,-554.506	0/1:61:21,40:21:731:40:1419:-109.643,0,-47.7476	0/1:97:56,41:56:1990:41:1430:-99.7939,0,-150.173	0/0:51:50,0:50:1759:0:0:0,-15.0515,-158.233	0/0:73:73,0:73:2586:0:0:0,-21.9752,-232.989	0/1:164:80,84:80:2824:84:2990:-219.96,0,-205.03	0/0:186:185,1:185:6554:1:36:0,-52.3933,-586.346	0/1:81:44,37:44:1520:37:1293:-92.2855,0,-112.703	0/0:239:239,0:239:8453:0:0:0,-71.9462,-760.78	0/1:109:53,56:53:1888:56:1960:-143.863,0,-137.386	0/0:91:90,1:90:3191:1:36:0,-23.7955,-283.817	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:281:280,1:280:9824:1:36:0,-80.9912,-880.523	0/1:81:42,39:42:1487:39:1351:-97.5006,0,-109.74	0/1:82:36,46:36:1272:46:1592:-118.882,0,-90.0984	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:113:59,54:59:2093:54:1890:-136.358,0,-154.622	0/0:33:33,0:33:1139:0:0:0,-9.93399,-102.812	0/0:141:139,2:139:4918:2:56:0,-37.1258,-437.454	0/0:96:96,0:96:3362:0:0:0,-28.8989,-302.796	0/0:112:111,1:111:3876:1:36:0,-30.1171,-345.283	0/0:63:63,0:63:2222:0:0:0,-18.9649,-200.244	0/1:89:39,50:39:1381:50:1732:-129.37,0,-97.7951	0/0:121:120,1:120:4222:1:32:0,-33.2253,-376.962	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:101:57,44:57:1992:44:1568:-111.007,0,-149.145	0/0:77:77,0:77:2721:0:0:0,-23.1793,-245.133	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:70:70,0:70:2464:0:0:0,-21.0721,-222.013	0/0:45:44,1:44:1553:1:36:0,-9.94807,-136.461	0/1:6:2,4:2:72:4:135:-10.6763,0,-5.03054	0/0:126:125,1:125:4398:1:36:0,-34.3315,-392.396	0/1:54:26,28:26:923:28:995:-73.6084,0,-67.1311	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/1:111:59,52:59:2090:52:1808:-129.582,0,-154.955	0/1:136:57,79:57:1972:79:2784:-209.86,0,-136.81	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:133:80,53:80:2837:53:1869:-128.45,0,-215.531	0/0:137:136,1:136:4754:1:36:0,-37.6428,-424.423	0/1:75:30,45:30:1068:45:1572:-119.19,0,-73.8548	0/1:67:32,35:32:1139:35:1233:-91.1028,0,-82.6494	0/0:151:148,2:148:5203:2:68:0,-39.05,-461.948	0/0:133:133,0:133:4708:0:0:0,-40.037,-423.883	0/1:61:22,39:22:780:39:1330:-101.631,0,-52.1602	0/0:61:61,0:61:2159:0:0:0,-18.3628,-194.577	0/1:81:47,34:47:1658:34:1207:-84.5491,0,-125.123	0/1:16:5,11:5:180:11:372:-28.9875,0,-11.7356	0/0:76:76,0:76:2696:0:0:0,-22.8783,-242.883	0/1:79:42,37:42:1477:37:1307:-94.1494,0,-109.441	0/0:146:145,0:145:5122:0:0:0,-43.6493,-460.767	0/1:150:58,92:58:2054:92:3251:-247.659,0,-139.976	0/1:137:69,68:69:2433:68:2402:-175.195,0,-177.984	0/1:97:41,56:41:1456:56:1982:-149.453,0,-102.136	0/1:12:3,9:3:104:9:320:-25.53,0,-6.09045	0/1:111:47,64:47:1656:64:2259:-170.159,0,-115.911	0/0:123:123,0:123:4396:0:0:0,-37.0267,-395.814	0/1:137:70,67:70:2463:67:2363:-171.685,0,-180.682	0/1:76:37,39:37:1307:39:1344:-98.3741,0,-95.0525	0/0:117:117,0:117:4088:0:0:0,-35.2205,-368.108	0/0:101:101,0:101:3521:0:0:0,-30.404,-317.101	0/0:263:263,0:263:9234:0:0:0,-79.1709,-831.042	0/0:38:38,0:38:1299:0:0:0,-11.4391,-117.203	0/1:123:53,70:53:1851:70:2457:-184.358,0,-129.84	0/1:138:78,60:78:2733:60:2085:-146.376,0,-204.67	0/1:75:40,35:40:1415:35:1236:-88.967,0,-105.069	0/1:147:73,74:73:2529:74:2597:-189.728,0,-183.607	0/1:88:34,53:34:1185:53:1883:-143.198,0,-80.4008	0/0:126:126,0:126:4445:0:0:0,-37.9298,-400.223	0/0:188:187,0:187:6518:0:0:0,-56.2926,-586.462
chr11	27500587	.	C	T	56934.5	PASS	AB=0.538839;ABP=59.0113;AC=48;AF=0.255319;AN=188;AO=2328;CIGAR=1X;DP=8977;DPB=8977;DPRA=1.14141;EPP=2337.46;EPPR=4461.5;GTI=0;LEN=1;MEANALT=1.03704;MQM=59.9669;MQMR=59.9889;NS=94;NUMALT=1;ODDS=4.57916;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82880;QR=236556;RO=6646;RPL=1688;RPP=1027.47;RPPR=4092.88;RPR=640;RUN=1;SAF=1315;SAP=88.082;SAR=1013;SRF=3616;SRP=115.209;SRR=3030;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:60:60,0:60:2127:0:0:0,-18.0618,-191.698	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/1:170:87,83:87:3086:83:2930:-212.758,0,-226.794	0/1:213:79,134:79:2823:134:4784:-366.597,0,-190.189	0/1:62:18,44:18:624:44:1563:-122.297,0,-37.8176	0/1:69:21,48:21:756:48:1704:-132.837,0,-47.5962	0/0:122:122,0:122:4333:0:0:0,-36.7257,-390.145	0/0:118:117,1:117:4149:1:36:0,-31.9233,-369.994	0/1:149:70,79:70:2495:79:2828:-209.905,0,-179.949	0/0:103:103,0:103:3655:0:0:0,-31.0061,-329.154	0/0:96:96,0:96:3411:0:0:0,-28.8989,-307.046	0/0:161:161,0:161:5715:0:0:0,-48.4658,-514.47	0/1:123:60,63:60:2147:63:2241:-164.925,0,-156.47	0/0:128:128,0:128:4583:0:0:0,-38.5318,-412.634	0/1:113:42,71:42:1512:71:2540:-194.834,0,-102.358	0/0:91:91,0:91:3255:0:0:0,-27.3937,-293.17	0/1:75:37,38:37:1297:38:1351:-99.3123,0,-94.4519	0/1:47:23,24:23:815:24:855:-63.1218,0,-59.5224	0/0:78:77,0:77:2740:0:0:0,-23.1793,-246.481	0/1:105:44,61:44:1580:61:2183:-165.127,0,-110.883	0/0:169:168,1:168:6012:1:36:0,-47.2758,-537.587	0/1:59:20,39:20:699:39:1400:-108.538,0,-45.4717	0/1:98:56,42:56:1973:42:1490:-104.893,0,-148.342	0/0:48:48,0:48:1699:0:0:0,-14.4494,-153.195	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:167:82,85:82:2897:85:3021:-221.847,0,-210.694	0/0:181:180,1:180:6433:1:36:0,-50.8882,-575.458	0/1:79:41,38:41:1439:38:1368:-99.6395,0,-106.021	0/0:238:238,0:238:8483:0:0:0,-71.6451,-763.47	0/1:113:49,64:49:1760:64:2280:-171.446,0,-124.667	0/0:89:88,1:88:3137:1:36:0,-23.1934,-278.957	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:279:279,0:279:9965:0:0:0,-83.9874,-896.79	0/1:80:43,37:43:1536:37:1319:-94.9288,0,-114.451	0/1:86:36,50:36:1274:50:1788:-135.314,0,-89.0729	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:107:52,55:52:1833:55:1959:-144.375,0,-133.038	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/0:133:133,0:133:4731:0:0:0,-40.037,-425.952	0/0:93:93,0:93:3295:0:0:0,-27.9958,-296.769	0/0:115:115,0:115:4090:0:0:0,-34.6184,-368.13	0/0:64:64,0:64:2283:0:0:0,-19.2659,-205.731	0/1:89:38,51:38:1345:51:1824:-137.649,0,-94.5565	0/0:118:118,0:118:4191:0:0:0,-35.5215,-377.374	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:98:57,41:57:2016:41:1469:-103.004,0,-152.21	0/0:80:80,0:80:2824:0:0:0,-24.0824,-254.399	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:69:69,0:69:2463:0:0:0,-20.7711,-221.924	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.559	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:120:119,1:119:4230:1:36:0,-32.5253,-377.283	0/1:57:28,29:28:1004:29:999:-73.0576,0,-73.5172	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:108:58,50:58:2045:50:1763:-126.436,0,-151.809	0/1:143:60,83:60:2111:83:2972:-224.665,0,-147.212	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:136:78,58:78:2804:58:2057:-144.46,0,-211.659	0/0:139:137,2:137:4877:2:72:0,-35.0064,-432.247	0/1:73:28,45:28:992:45:1584:-120.872,0,-67.6192	0/1:69:33,36:33:1176:36:1288:-95.4525,0,-85.3767	0/0:152:148,3:148:5242:3:108:0,-35.7402,-461.845	0/0:131:131,0:131:4676:0:0:0,-39.4349,-421	0/1:64:25,39:25:876:39:1377:-104.961,0,-59.8884	0/0:56:56,0:56:2003:0:0:0,-16.8577,-180.543	0/1:84:47,37:47:1683:37:1328:-94.533,0,-126.47	0/1:19:5,14:5:180:14:481:-37.8899,0,-10.8325	0/0:72:72,0:72:2565:0:0:0,-21.6742,-231.099	0/1:86:45,41:45:1616:41:1435:-103.554,0,-119.841	0/0:140:140,0:140:4991:0:0:0,-42.1442,-449.112	0/1:153:58,95:58:2061:95:3393:-259.526,0,-139.702	0/1:139:69,70:69:2472:70:2508:-184.129,0,-180.891	0/1:100:40,60:40:1419:60:2141:-162.855,0,-97.9036	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:117:51,66:51:1794:66:2364:-177.798,0,-126.518	0/0:122:122,0:122:4355:0:0:0,-36.7257,-392.125	0/1:135:68,66:68:2431:66:2359:-171.87,0,-178.347	0/1:81:36,45:36:1292:45:1608:-120.627,0,-92.2003	0/0:116:116,0:116:4129:0:0:0,-34.9195,-371.794	0/0:95:95,0:95:3388:0:0:0,-28.5978,-305.136	0/0:260:260,0:260:9242:0:0:0,-78.2678,-831.755	0/0:37:37,0:37:1306:0:0:0,-11.1381,-117.84	0/1:126:54,72:54:1927:72:2554:-192.18,0,-135.776	0/1:140:81,59:81:2883:59:2112:-148.205,0,-217.563	0/1:74:38,36:38:1368:36:1264:-91.7836,0,-101.145	0/1:146:71,75:71:2540:75:2680:-197.489,0,-184.901	0/1:100:35,65:35:1239:65:2289:-176.165,0,-81.7107	0/0:127:127,0:127:4515:0:0:0,-38.2308,-406.518	0/0:188:187,1:187:6613:1:27:0,-53.8939,-592.551
chr11	27519125	.	G	A	31034.7	PASS	AB=0.493918;ABP=4.1461;AC=47;AF=0.25;AN=188;AO=1756;CIGAR=1X;DP=7273;DPB=7273;DPRA=1.04717;EPP=3807.43;EPPR=11976.5;GTI=2;LEN=1;MEANALT=1.03846;MQM=52.2546;MQMR=59.9563;NS=94;NUMALT=1;ODDS=0.293462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62476;QR=192446;RO=5514;RPL=61;RPP=3304.68;RPPR=11976.5;RPR=1695;RUN=1;SAF=60;SAP=3312.77;SAR=1696;SRF=0;SRP=11976.5;SRR=5514;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:10:10,0:10:324:0:0:0,-3.0103,-29.474	0/0:117:117,0:117:4050:0:0:0,-35.2205,-364.689	0/1:72:44,28:44:1556:28:995:-67.8769,0,-118.655	0/1:118:56,62:56:1935:62:2202:-162.123,0,-138.891	0/1:34:9,25:9:324:25:892:-69.9341,0,-19.2708	0/1:31:12,19:12:423:19:671:-50.9906,0,-29.0731	0/0:114:114,0:114:3974:0:0:0,-34.3174,-357.844	0/0:147:147,0:147:5181:0:0:0,-44.2514,-466.432	0/1:56:32,24:32:1111:24:839:-58.382,0,-83.4358	0/0:164:164,0:164:5779:0:0:0,-49.3689,-520.224	0/0:74:74,0:74:2560:0:0:0,-22.2762,-230.646	0/0:70:70,0:70:2455:0:0:0,-21.0721,-221.204	0/1:69:35,34:35:1202:34:1195:-86.8969,0,-87.7072	0/0:134:133,0:133:4663:0:0:0,-40.037,-419.583	0/1:59:33,26:33:1136:26:932:-65.8155,0,-84.7815	0/0:46:46,0:46:1628:0:0:0,-13.8474,-146.809	0/1:94:49,45:49:1734:45:1596:-115.31,0,-128.046	0/1:49:21,28:21:735:28:946:-70.4019,0,-51.7191	0/0:36:36,0:36:1269:0:0:0,-10.8371,-114.511	0/1:160:89,71:89:3082:71:2532:-179.046,0,-229.444	0/0:120:120,0:120:4203:0:0:0,-36.1236,-378.455	0/1:61:18,43:18:636:43:1525:-118.834,0,-39.2052	0/1:48:14,34:14:465:34:1180:-91.6937,0,-27.7152	0/0:46:46,0:46:1599:0:0:0,-13.8474,-144.199	0/0:19:19,0:19:653:0:0:0,-5.71957,-59.089	0/1:250:150,100:150:5237:100:3547:-242.526,0,-396.188	0/0:106:106,0:106:3715:0:0:0,-31.9092,-334.556	0/1:24:17,7:17:608:7:248:-15.4037,0,-47.8273	0/0:130:129,1:129:4519:1:36:0,-35.5356,-403.284	0/1:126:77,49:77:2706:49:1742:-118.538,0,-205.852	0/0:60:60,0:60:2101:0:0:0,-18.0618,-189.356	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:14:13,1:13:460:1:36:0,-0.622998,-38.144	1/1:4:0,4:0:0:4:144:-13.2838,-1.20412,0	0/1:5:3,2:3:108:2:72:-5.3232,0,-8.57002	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:221:221,0:221:7813:0:0:0,-66.5276,-703.198	0/1:127:59,68:59:1972:68:2435:-180.628,0,-139.511	0/1:87:46,40:46:1621:40:1436:-102.658,0,-119.929	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:91:51,40:51:1784:40:1413:-99.5204,0,-133.446	0/0:26:26,0:26:905:0:0:0,-7.82678,-81.7628	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:73:73,0:73:2595:0:0:0,-21.9752,-233.796	0/0:72:72,0:72:2441:0:0:0,-21.6742,-219.942	0/0:79:79,0:79:2774:0:0:0,-23.7814,-249.901	0/1:101:56,45:56:1943:45:1607:-114.124,0,-144.739	0/0:114:114,0:114:3986:0:0:0,-34.3174,-358.93	0/0:120:120,0:120:4219:0:0:0,-36.1236,-379.892	0/1:152:70,82:70:2482:82:2936:-217.58,0,-177.877	0/0:111:111,0:111:3837:0:0:0,-33.4143,-345.532	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:96:96,0:96:3354:0:0:0,-28.8989,-302.077	0/0:45:45,0:45:1534:0:0:0,-13.5463,-138.341	0/1:10:3,7:3:108:7:252:-19.8592,0,-7.06487	0/0:72:72,0:72:2444:0:0:0,-21.6742,-220.211	0/1:19:14,5:14:483:5:176:-10.3819,0,-38.0777	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:13:12,1:12:419:1:36:0,-0.315115,-34.4444	0/1:57:39,18:39:1359:18:644:-40.9206,0,-105.219	0/1:120:53,67:53:1863:67:2387:-177.913,0,-131.822	0/1:6:4,2:4:131:2:68:-4.64032,0,-10.3073	0/1:151:82,69:82:2854:69:2443:-172.702,0,-211.641	0/0:196:195,1:195:6692:1:36:0,-55.4126,-598.784	0/1:81:44,37:44:1536:37:1332:-95.3995,0,-114.146	0/1:31:16,15:16:492:15:540:-39.504,0,-35.242	0/0:89:89,0:89:3075:0:0:0,-26.7917,-276.976	0/0:85:85,0:85:2973:0:0:0,-25.5875,-267.802	0/1:42:16,26:16:557:26:914:-69.4903,0,-37.8123	0/0:61:61,0:61:2146:0:0:0,-18.3628,-193.403	0/1:89:42,47:42:1475:47:1680:-123.895,0,-106.252	0/1:35:23,12:23:824:12:432:-28.5829,0,-63.9473	0/0:45:45,0:45:1571:0:0:0,-13.5463,-141.677	0/1:82:36,46:36:1240:46:1648:-123.534,0,-87.2143	0/0:119:119,0:119:4132:0:0:0,-35.8226,-372.053	0/1:146:65,81:65:2275:81:2912:-217.707,0,-161.06	0/1:65:18,47:18:631:47:1688:-131.246,0,-37.5487	0/1:81:43,38:43:1501:38:1354:-97.5983,0,-110.997	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/1:73:31,42:31:1100:42:1504:-113.294,0,-77.3351	0/0:92:90,1:90:3143:1:36:0,-24.1601,-279.445	0/1:129:71,58:71:2479:58:2052:-145.531,0,-184.53	0/1:116:57,59:57:1965:59:2078:-151.579,0,-142.202	0/0:65:65,0:65:2263:0:0:0,-19.5669,-203.929	0/0:76:76,0:76:2638:0:0:0,-22.8783,-237.644	0/0:149:149,0:149:5219:0:0:0,-44.8535,-469.853	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.322	0/1:67:32,35:32:1105:35:1235:-90.1877,0,-79.5808	0/1:55:36,19:36:1259:19:676:-43.7533,0,-97.0549	0/1:60:25,35:25:879:35:1256:-94.6705,0,-61.365	0/1:158:77,81:77:2716:81:2896:-212.519,0,-197.12	0/1:45:18,27:18:644:27:972:-73.9347,0,-44.7442	0/0:93:93,0:93:3237:0:0:0,-27.9958,-291.554	0/0:122:121,1:121:4242:1:36:0,-33.1274,-378.364
chr11	27519152	.	ATG	ATA,GTA	164367	PASS	AB=0.509122,0.48723;ABP=5.58523,8.05716;AC=141,47;AF=0.75,0.25;AN=188;AO=5636,1740;CIGAR=2M1X,1X1M1X;DP=7396;DPB=7396;DPRA=79.5161,1.00742;EPP=11405,3441.92;EPPR=11.6962;GTI=1;LEN=1,3;MEANALT=1.68817,2.2449;MQM=59.9317,52.1626;MQMR=51.5;NS=94;NUMALT=2;ODDS=0.205439;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=201751,61232;QR=129;RO=4;RPL=5538,1700;RPP=11405,3441.92;RPPR=11.6962;RPR=98,40;RUN=1,1;SAF=0,0;SAP=12241.4,3781.37;SAR=5636,1740;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10,0:0:0:10,0:351,0:-31.9267,-3.0103,0,-31.9267,-3.0103,-31.9267	1/1:121:1,120,0:1:21:120,0:4284,0:-383.632,-34.3247,0,-383.933,-36.1236,-385.52	1/2:68:0,41,27:0:0:41,27:1472,936:-196.308,-76.2255,-63.8832,-120.434,0,-112.306	1/2:117:0,54,62:0:0:54,62:1944,2200:-337.106,-178.49,-162.235,-158.612,0,-139.949	1/2:21:0,10,11:0:0:10,11:360,392:-61.3175,-31.9398,-28.9295,-29.734,0,-26.4227	1/2:30:0,12,18:0:0:12,18:432,619:-85.5235,-50.2672,-46.6548,-35.6088,0,-30.1903	1/1:118:0,118,0:0:0:118,0:4223,0:-380.244,-35.5215,0,-380.244,-35.5215,-380.244	1/1:156:2,154,0:2:72:154,0:5489,0:-487.291,-40.124,0,-487.894,-46.3586,-493.768	1/2:52:0,29,22:0:0:29,22:1040,770:-147.085,-62.2509,-53.5211,-84.902,0,-78.2793	1/1:175:0,175,0:0:0:175,0:6263,0:-563.693,-52.6803,0,-563.693,-52.6803,-563.693	1/1:76:0,76,0:0:0:76,0:2728,0:-245.746,-22.8783,0,-245.746,-22.8783,-245.746	1/1:75:0,75,0:0:0:75,0:2674,0:-240.904,-22.5773,0,-240.904,-22.5773,-240.904	1/2:71:0,33,37:0:0:33,37:1188,1304:-202.824,-105.885,-95.9513,-96.9348,0,-85.7967	1/1:133:0,133,0:0:0:133,0:4765,0:-428.9,-40.037,0,-428.9,-40.037,-428.9	1/2:61:0,34,26:0:0:34,26:1224,917:-174.01,-74.1321,-63.8971,-99.903,0,-92.0763	1/1:44:0,43,0:0:0:43,0:1540,0:-138.533,-12.9443,0,-138.533,-12.9443,-138.533	1/2:96:0,50,45:0:0:50,45:1783,1611:-276.355,-131.014,-115.963,-145.338,0,-131.792	1/2:47:0,19,27:0:0:19,27:680,945:-132.074,-76.6185,-70.899,-55.4504,0,-47.3225	1/1:37:0,37,0:0:0:37,0:1328,0:-119.812,-11.1381,0,-119.812,-11.1381,-119.812	1/2:161:0,90,70:0:0:90,70:3228,2466:-463.282,-199.991,-172.898,-263.433,0,-242.361	1/1:120:0,120,0:0:0:120,0:4285,0:-385.809,-36.1236,0,-385.809,-36.1236,-385.809	1/2:52:0,17,35:0:0:17,35:612,1225:-149.713,-99.7737,-94.6562,-50.2959,0,-39.7599	1/2:43:0,14,29:0:0:14,29:500,1027:-124.412,-83.6456,-79.4312,-41.1218,0,-32.3919	1/1:47:0,47,0:0:0:47,0:1678,0:-151.307,-14.1484,0,-151.307,-14.1484,-151.307	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:257:0,154,103:0:0:154,103:5494,3583:-737.86,-290.037,-243.678,-448.173,0,-417.167	1/1:112:0,112,0:0:0:112,0:4015,0:-361.523,-33.7154,0,-361.523,-33.7154,-361.523	1/2:24:0,17,7:0:0:17,7:612,247:-70.3741,-20.4325,-15.315,-50.2959,0,-48.1887	1/1:134:0,134,0:0:0:134,0:4812,0:-433.229,-40.338,0,-433.229,-40.338,-433.229	1/2:125:0,81,44:0:0:81,44:2891,1552:-362.006,-126.317,-101.933,-236.043,0,-222.797	1/1:58:0,58,0:0:0:58,0:2073,0:-186.84,-17.4597,0,-186.84,-17.4597,-186.84	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:16:0,15,1:0:0:15,1:532,36:-47.8542,-4.51545,0,-44.9227,-1.22506,-44.6217	2/2:1:0,0,1:0:0:0,1:0,36:-3.59317,-3.59317,-3.59317,-0.30103,-0.30103,0	1/2:6:0,3,3:0:0:3,3:104,106:-17.4248,-8.97477,-8.07168,-8.79971,0,-7.89662	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:224:0,223,0:0:0:223,0:7994,0:-719.089,-67.1297,0,-719.089,-67.1297,-719.089	1/2:128:0,59,69:0:0:59,69:2120,2441:-371.507,-198.555,-180.794,-173.308,0,-152.537	1/2:91:0,47,44:0:0:47,44:1663,1542:-260.264,-124.813,-110.665,-135.801,0,-122.555	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:95:0,53,42:0:0:53,42:1904,1478:-275.756,-120.428,-104.473,-155.683,0,-143.04	1/1:27:0,27,0:0:0:27,0:957,0:-86.4429,-8.12781,0,-86.4429,-8.12781,-86.4429	1/1:46:0,46,0:0:0:46,0:1633,0:-147.257,-13.8474,0,-147.257,-13.8474,-147.257	1/1:72:0,72,0:0:0:72,0:2592,0:-233.512,-21.6742,0,-233.512,-21.6742,-233.512	1/1:75:0,75,0:0:0:75,0:2687,0:-242.074,-22.5773,0,-242.074,-22.5773,-242.074	1/1:80:0,80,0:0:0:80,0:2855,0:-257.188,-24.0824,0,-257.188,-24.0824,-257.188	1/2:100:0,59,41:0:0:59,41:2112,1442:-289.628,-117.394,-99.6329,-172.588,0,-160.246	1/1:117:0,117,0:0:0:117,0:4201,0:-378.265,-35.2205,0,-378.265,-35.2205,-378.265	1/1:126:0,126,0:0:0:126,0:4532,0:-408.045,-37.9298,0,-408.045,-37.9298,-408.045	1/2:158:0,73,85:0:0:73,85:2616,3003:-457.01,-243.653,-221.678,-213.712,0,-188.125	1/1:114:0,114,0:0:0:114,0:4095,0:-368.733,-34.3174,0,-368.733,-34.3174,-368.733	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:98:0,98,0:0:0:98,0:3520,0:-317.009,-29.5009,0,-317.009,-29.5009,-317.009	1/1:43:0,43,0:0:0:43,0:1526,0:-137.631,-12.9443,0,-137.631,-12.9443,-137.631	1/2:10:0,3,7:0:0:3,7:104,245:-28.5818,-20.1289,-19.2258,-8.79971,0,-6.6925	1/1:73:0,73,0:0:0:73,0:2620,0:-236.047,-21.9752,0,-236.047,-21.9752,-236.047	1/2:19:0,14,5:0:0:14,5:504,178:-55.9073,-14.7792,-10.5648,-41.4837,0,-39.9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chr11	27548223	.	C	T	155724	PASS	AB=0.485108;ABP=12;AC=140;AF=0.744681;AN=188;AO=7477;CIGAR=1X;DP=9903;DPB=9903;DPRA=15.2012;EPP=16221.7;EPPR=5262.32;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.9361;MQMR=59.9851;NS=94;NUMALT=1;ODDS=0.53602;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264508;QR=86030;RO=2422;RPL=2;RPP=16221.7;RPPR=5262.32;RPR=7475;RUN=1;SAF=0;SAP=16239.1;SAR=7477;SRF=0;SRP=5262.32;SRR=2422;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:66:0,66:0:0:66:2306:-207.8,-19.868,0	1/1:87:0,87:0:0:87:3091:-278.419,-26.1896,0	0/1:122:55,67:55:1964:67:2392:-178.804,0,-140.31	0/1:203:116,87:116:4132:87:3077:-216.05,0,-310.957	0/1:52:23,29:23:809:29:1036:-77.9004,0,-57.4747	0/1:52:21,31:21:741:31:1090:-82.7552,0,-51.358	1/1:93:0,93:0:0:93:3312:-298.298,-27.9958,0	1/1:142:0,142:0:0:142:5024:-452.292,-42.7463,0	0/1:137:67,70:67:2383:70:2476:-181.846,0,-173.486	1/1:105:1,104:1:36:104:3677:-327.347,-28.0099,0	1/1:65:1,64:1:36:64:2275:-201.414,-15.9687,0	1/1:128:1,127:1:36:127:4449:-396.991,-34.9336,0	0/1:105:59,46:59:2092:46:1603:-112.95,0,-156.939	1/1:90:0,90:0:0:90:3160:-284.627,-27.0927,0	0/1:89:46,43:46:1609:43:1529:-111.109,0,-118.303	1/1:82:2,80:2:72:80:2813:-246.574,-17.8477,0	0/1:46:26,20:26:908:20:699:-49.3851,0,-68.1879	0/1:33:15,18:15:528:18:638:-47.8148,0,-37.9174	1/1:28:0,28:0:0:28:986:-89.053,-8.42884,0	0/1:183:85,98:85:3009:98:3477:-258.042,0,-215.953	1/1:144:0,144:0:0:144:5099:-459.059,-43.3483,0	0/1:177:97,79:97:3463:79:2805:-199.388,0,-258.581	0/1:129:61,67:61:2161:67:2391:-176.555,0,-155.864	1/1:125:0,125:0:0:125:4408:-396.707,-37.6288,0	1/1:152:0,152:0:0:152:5405:-486.583,-45.7566,0	0/1:298:153,145:153:5457:145:5146:-373.578,0,-401.552	1/1:198:0,198:0:0:198:6992:-629.351,-59.6039,0	0/1:42:24,18:24:821:18:628:-44.2022,0,-61.5592	1/1:206:0,206:0:0:206:7305:-657.373,-62.0122,0	0/1:186:79,107:79:2807:107:3782:-284.59,0,-196.879	1/1:170:1,169:1:36:169:5959:-532.825,-47.5768,0	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	1/1:18:0,18:0:0:18:629:-56.9338,-5.41854,0	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4449	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:239:0,239:0:0:239:8514:-766.265,-71.9462,0	0/1:144:88,56:88:3143:56:1984:-135.486,0,-239.747	0/1:53:33,20:33:1143:20:712:-48.4521,0,-87.2174	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:183:111,72:111:3980:72:2534:-173.221,0,-303.301	1/1:34:0,34:0:0:34:1206:-108.845,-10.235,0	1/1:269:0,269:0:0:269:9529:-857.558,-80.9771,0	1/1:81:1,80:1:36:80:2830:-251.437,-20.8807,0	1/1:71:0,71:0:0:71:2524:-227.408,-21.3731,0	1/1:135:0,135:0:0:135:4779:-430.273,-40.6391,0	0/1:160:85,74:85:3036:74:2628:-188.545,0,-225.247	1/1:158:0,158:0:0:158:5555:-500.025,-47.5627,0	1/1:155:1,154:1:36:154:5456:-487.521,-43.0614,0	0/1:121:50,71:50:1787:71:2523:-190.894,0,-124.687	1/1:164:0,163:0:0:163:5776:-519.769,-49.0679,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:155:0,155:0:0:155:5528:-497.648,-46.6597,0	1/1:100:0,100:0:0:100:3533:-318.168,-30.103,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:103:0,103:0:0:103:3668:-330.314,-31.0061,0	0/1:85:42,43:42:1496:43:1515:-111.055,0,-109.347	1/1:7:0,7:0:0:7:241:-22.0247,-2.10721,0	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	0/1:117:43,74:43:1536:74:2609:-199.838,0,-103.313	0/1:114:55,59:55:1925:59:2073:-152.522,0,-139.205	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:124:69,55:69:2447:55:1968:-140.067,0,-183.158	1/1:207:1,206:1:36:206:7339:-656.955,-58.7149,0	0/1:94:40,54:40:1440:54:1913:-144.149,0,-101.601	0/1:59:23,36:23:807:36:1247:-94.7666,0,-55.1884	1/1:133:0,133:0:0:133:4717:-424.628,-40.037,0	1/1:132:2,130:2:68:130:4601:-407.801,-33.2783,0	0/1:48:33,15:33:1166:15:528:-33.4019,0,-90.7961	1/1:101:3,98:3:108:98:3472:-302.612,-20.3289,0	0/1:52:28,24:28:996:24:847:-60.8952,0,-74.3013	0/1:25:12,13:12:413:13:456:-33.8475,0,-29.9721	1/1:104:0,104:0:0:104:3688:-332.126,-31.3071,0	0/1:151:77,74:77:2726:74:2571:-186.183,0,-200.128	1/1:241:0,241:0:0:241:8503:-765.286,-72.5482,0	0/1:156:81,75:81:2903:75:2652:-191.959,0,-214.544	0/1:98:48,50:48:1712:50:1772:-130.262,0,-124.865	0/1:100:51,49:51:1806:49:1724:-125.33,0,-132.717	0/1:39:19,20:19:684:20:716:-53.0275,0,-50.1502	0/1:70:38,32:38:1364:32:1148:-82.5577,0,-101.989	1/1:101:0,101:0:0:101:3584:-322.762,-30.404,0	0/1:263:155,108:155:5514:108:3825:-265.234,0,-417.218	0/1:64:29,35:29:1044:35:1227:-91.4662,0,-74.9225	1/1:103:0,103:0:0:103:3659:-328.739,-31.0061,0	1/1:69:0,69:0:0:69:2419:-217.968,-20.7711,0	1/1:183:1,182:1:36:182:6418:-574.065,-51.4902,0	1/1:23:0,23:0:0:23:802:-72.4974,-6.92369,0	0/1:88:39,49:39:1400:49:1735:-129.943,0,-99.8085	0/1:107:49,58:49:1708:58:2044:-152.007,0,-121.792	0/1:64:33,31:33:1172:31:1099:-79.9535,0,-86.5216	0/1:118:68,50:68:2394:50:1730:-120.457,0,-180.196	0/1:96:66,30:66:2328:30:1072:-67.8936,0,-180.88	1/1:101:0,101:0:0:101:3524:-317.369,-30.404,0	1/1:129:0,129:0:0:129:4576:-412.008,-38.8329,0
chr11	27548334	.	GCTG	GCTA,CCTA	243291	PASS	AB=0.557495,0.436027;ABP=162.567,200.549;AC=140,48;AF=0.744681,0.255319;AN=188;AO=8924,2435;CIGAR=3M1X,1X2M1X;DP=11434;DPB=11435.2;DPRA=24.5785,1.14891;EPP=19355.2,5281.86;EPPR=9.52472;GTI=4;LEN=1,4;MEANALT=2.12903,2.55769;MQM=59.9874,59.961;MQMR=60;NS=94;NUMALT=2;ODDS=0.0300887;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=88,88;PQR=0;PRO=0;QA=318065,85576;QR=103;RO=3;RPL=0,0;RPP=19381.2,5290.55;RPPR=9.52472;RPR=8924,2435;RUN=1,1;SAF=3,1;SAP=19355.2,5281.86;SAR=8921,2434;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27,0:0:0:27,0:950,0:-85.8134,-8.12781,0,-85.8134,-8.12781,-85.8134	1/1:130:0,128,0:0:0:128,0:4562,0:-410.415,-38.5318,0,-410.415,-38.5318,-410.415	1/2:284:1,174,106:1:35:174,106:6211,3726:-806.479,-300.428,-250.897,-503.5,0,-474.439	1/2:213:0,122,85:0:0:122,85:4353,2988:-598.073,-243.208,-206.483,-354.859,0,-329.271	1/2:96:0,60,36:0:0:60,36:2160,1279:-280.823,-104.575,-86.5136,-176.605,0,-165.768	1/2:99:0,55,43:0:0:55,43:1968,1474:-280.135,-119.646,-103.089,-160.479,0,-147.534	1/1:237:0,236,0:0:0:236,0:8369,0:-752.858,-71.0431,0,-752.858,-71.0431,-752.858	1/1:205:0,204,0:0:0:204,0:7274,0:-654.46,-61.4101,0,-654.46,-61.4101,-654.46	1/2:125:0,69,55:0:0:69,55:2471,1927:-358.308,-156.79,-136.019,-201.512,0,-184.956	1/1:131:1,130,0:1:32:130,0:4629,0:-413.573,-36.2356,0,-413.874,-39.1339,-416.452	1/1:59:0,59,0:0:0:59,0:2108,0:-189.051,-17.7608,0,-189.051,-17.7608,-189.051	1/1:98:0,98,0:0:0:98,0:3488,0:-314.13,-29.5009,0,-314.13,-29.5009,-314.13	1/2:96:0,60,35:0:0:60,35:2132,1228:-273.781,-100.046,-81.9839,-173.845,0,-163.309	1/1:62:0,62,0:0:0:62,0:2180,0:-196.465,-18.6639,0,-196.465,-18.6639,-196.465	1/2:101:0,48,52:0:0:48,52:1716,1853:-291.114,-151.193,-136.744,-140.073,0,-124.419	1/1:78:0,78,0:0:0:78,0:2792,0:-251.52,-23.4803,0,-251.52,-23.4803,-251.52	1/2:115:0,52,63:0:0:52,63:1822,2203:-327.825,-179.57,-163.917,-148.605,0,-129.64	1/2:65:0,27,38:0:0:27,38:944,1316:-184.095,-107.297,-99.1694,-77.1463,0,-65.7072	1/1:58:1,57,0:1:36:57,0:2029,0:-179.282,-13.8615,0,-179.583,-17.1587,-182.521	1/2:395:0,225,169:0:0:225,169:8031,6022:-1145.54,-490.814,-423.082,-654.678,0,-603.804	1/1:168:0,163,0:0:0:163,0:5820,0:-523.606,-49.0679,0,-523.606,-49.0679,-523.606	1/2:132:0,49,83:0:0:49,83:1728,2907:-377.582,-236.882,-222.131,-141.051,0,-116.066	1/2:83:0,54,29:0:0:54,29:1929,1012:-239.936,-82.6586,-66.403,-157.629,0,-148.899	1/1:72:0,72,0:0:0:72,0:2562,0:-230.831,-21.6742,0,-230.831,-21.6742,-230.831	1/1:103:0,103,0:0:0:103,0:3657,0:-329.332,-31.0061,0,-329.332,-31.0061,-329.332	1/2:315:0,170,140:0:0:170,140:6031,4940:-893.252,-402.315,-351.14,-490.995,0,-448.851	1/1:240:0,235,2:0:0:235,2:8392,72:-754.961,-70.7421,0,-749.087,-64.8419,-748.485	1/2:68:0,34,34:0:0:34,34:1191,1201:-195.066,-98.161,-87.926,-97.2565,0,-87.0215	1/1:380:0,374,2:0:0:374,2:13343,71:-1200.33,-112.585,0,-1194.55,-106.787,-1193.95	1/2:137:0,74,63:0:0:74,63:2615,2213:-393.437,-180.469,-158.193,-213.321,0,-194.356	1/1:103:0,101,0:0:0:101,0:3616,0:-325.394,-30.404,0,-325.394,-30.404,-325.394	2/2:5:0,0,5:0:0:0,5:0,179:-16.4604,-16.4604,-16.4604,-1.50515,-1.50515,0	1/1:17:0,16,0:0:0:16,0:576,0:-51.8152,-4.81648,0,-51.8152,-4.81648,-51.8152	1/2:12:0,7,5:0:0:7,5:252,157:-33.5235,-12.9348,-10.8276,-20.9217,0,-19.4166	1/2:6:0,3,2:0:0:3,2:108,72:-14.7703,-5.9414,-5.03831,-8.88714,0,-8.28508	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:264:0,263,0:0:0:263,0:9368,0:-842.725,-79.1709,0,-842.725,-79.1709,-842.725	1/2:210:0,110,100:0:0:110,100:3927,3529:-607.383,-287.228,-254.114,-320.51,0,-290.407	1/2:106:0,60,46:0:0:60,46:2137,1617:-306.151,-131.97,-113.908,-174.534,0,-160.687	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:168:0,99,68:0:0:99,68:3545,2413:-485.756,-196.656,-166.854,-289.155,0,-268.685	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	1/1:162:0,162,0:0:0:162,0:5778,0:-520.075,-48.7669,0,-520.075,-48.7669,-520.075	1/1:108:0,107,0:0:0:107,0:3836,0:-345.076,-32.2102,0,-345.076,-32.2102,-345.076	1/1:83:0,82,0:0:0:82,0:2902,0:-261.165,-24.6845,0,-261.165,-24.6845,-261.165	1/1:138:0,136,0:0:0:136,0:4870,0:-438.126,-40.9401,0,-438.126,-40.9401,-438.126	1/2:164:0,105,59:0:0:105,59:3748,2044:-472.03,-166.468,-134.86,-305.912,0,-288.152	1/1:278:0,277,0:0:0:277,0:9878,0:-888.661,-83.3853,0,-888.661,-83.3853,-888.661	1/1:127:0,127,0:0:0:127,0:4527,0:-407.596,-38.2308,0,-407.596,-38.2308,-407.596	1/2:166:0,103,62:0:0:103,62:3696,2209:-481.539,-180.061,-149.055,-301.486,0,-282.822	1/1:133:0,132,1:0:0:132,1:4704,36:-423.159,-39.736,0,-420.221,-36.4387,-419.92	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:184:0,182,0:0:0:182,0:6457,0:-580.855,-54.7875,0,-580.855,-54.7875,-580.855	1/1:37:0,37,0:0:0:37,0:1313,0:-118.47,-11.1381,0,-118.47,-11.1381,-118.47	1/2:21:0,11,10:0:0:11,10:396,350:-61.1422,-28.8254,-25.5141,-32.6714,0,-29.6611	1/1:180:0,177,0:0:0:177,0:6329,0:-569.403,-53.2823,0,-569.403,-53.2823,-569.403	1/2:72:0,40,32:0:0:40,32:1416,1112:-206.095,-90.7518,-78.7106,-115.693,0,-106.06	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:26:0,26,0:0:0:26,0:917,0:-82.8446,-7.82678,0,-82.8446,-7.82678,-82.8446	1/2:69:0,30,39:0:0:30,39:1071,1373:-199.443,-112.127,-103.096,-87.6707,0,-75.9305	1/2:130:0,74,54:0:0:74,54:2644,1884:-368.802,-153.223,-130.947,-215.576,0,-199.32	1/2:10:0,1,9:0:0:1,9:36,317:-29.0985,-26.1603,-25.8593,-3.29724,0,-0.587975	1/2:225:0,137,87:0:0:137,87:4919,3062:-650.525,-249.262,-208.021,-401.258,0,-375.068	1/1:222:0,219,1:0:0:219,1:7809,36:-702.528,-65.9256,0,-699.59,-62.9648,-699.289	1/2:62:0,27,34:0:0:27,34:968,1187:-175.641,-96.6843,-88.5564,-79.0943,0,-68.8592	1/2:79:0,49,29:0:0:49,29:1729,1021:-223.981,-83.1898,-68.4394,-140.861,0,-132.131	1/1:177:0,176,1:0:0:176,1:6256,36:-562.776,-52.9813,0,-559.839,-49.684,-559.538	1/1:89:0,89,0:0:0:89,0:3188,0:-287.144,-26.7917,0,-287.144,-26.7917,-287.144	1/2:10:0,7,3:0:0:7,3:252,96:-28.6435,-8.05359,-5.94638,-20.9217,0,-20.0187	1/1:120:0,120,0:0:0:120,0:4274,0:-384.839,-36.1236,0,-384.839,-36.1236,-384.839	1/2:79:0,42,37:0:0:42,37:1508,1306:-229.719,-106.703,-94.06,-123.371,0,-112.233	1/2:19:0,14,5:0:0:14,5:504,172:-55.4484,-14.3128,-10.0984,-41.4837,0,-39.9785	1/1:162:0,161,0:0:0:161,0:5737,0:-516.219,-48.4658,0,-516.219,-48.4658,-516.219	1/2:96:0,57,39:0:0:57,39:2044,1372:-278.756,-112.037,-94.8787,-167.073,0,-155.333	1/1:216:0,215,0:0:0:215,0:7667,0:-689.794,-64.7215,0,-689.794,-64.7215,-689.794	1/2:225:0,134,90:0:0:134,90:4779,3161:-646.897,-257.322,-216.984,-389.627,0,-362.534	1/2:117:0,86,31:0:0:86,31:3058,1106:-339.723,-90.5189,-64.6303,-249.561,0,-240.229	1/2:176:0,115,58:0:0:115,58:4112,2042:-501.58,-166.288,-131.669,-335.345,0,-317.886	1/2:10:0,7,3:0:0:7,3:252,108:-29.734,-9.17208,-7.06487,-20.9217,0,-20.0187	1/2:189:0,122,67:0:0:122,67:4365,2346:-547.174,-191.23,-154.504,-356.297,0,-336.128	1/1:190:0,190,0:0:0:190,0:6753,0:-607.846,-57.1957,0,-607.846,-57.1957,-607.846	1/2:238:0,127,109:0:0:127,109:4493,3832:-677.896,-311.942,-273.711,-365.981,0,-333.169	1/2:143:0,56,87:0:0:56,87:2003,3018:-408.994,-245.662,-228.804,-163.685,0,-137.496	1/1:71:0,71,0:0:0:71,0:2537,0:-228.579,-21.3731,0,-228.579,-21.3731,-228.579	1/1:128:0,126,0:0:0:126,0:4496,0:-404.539,-37.9298,0,-404.539,-37.9298,-404.539	1/1:173:0,172,0:0:0:172,0:6155,0:-553.829,-51.7772,0,-553.829,-51.7772,-553.829	1/1:73:0,73,0:0:0:73,0:2577,0:-232.178,-21.9752,0,-232.178,-21.9752,-232.178	1/2:83:0,50,32:0:0:50,32:1788,1107:-235.802,-90.0005,-74.949,-145.85,0,-136.217	1/2:109:0,49,60:0:0:49,60:1737,2099:-312.627,-171.117,-156.366,-141.862,0,-123.8	1/2:32:0,19,12:0:0:19,12:676,423:-89.6542,-34.5539,-28.8343,-55.2122,0,-51.5998	1/2:112:0,58,54:0:0:58,54:2063,1901:-323.178,-155.052,-137.592,-168.422,0,-152.166	1/2:95:0,26,69:0:0:26,69:932,2421:-273.39,-197.374,-189.548,-76.3721,0,-55.601	1/1:169:0,169,0:0:0:169,0:6023,0:-542.175,-50.8741,0,-542.175,-50.8741,-542.175	1/1:130:0,130,0:0:0:130,0:4611,0:-415.155,-39.1339,0,-415.155,-39.1339,-415.155
chr11	27562305	.	ATT	TTT,TTC	185514	PASS	AB=0.495263,0.502566;ABP=3.99788,3.30006;AC=140,48;AF=0.744681,0.255319;AN=188;AO=6814,2566;CIGAR=1X2M,1X1M1X;DP=9400;DPB=9413.67;DPRA=6.7276,1.18904;EPP=14799.4,5575.01;EPPR=22.5536;GTI=2;LEN=1,3;MEANALT=1.64516,2.11765;MQM=38.7542,42.6629;MQMR=53.1111;NS=94;NUMALT=2;ODDS=0.744342;PAIRED=0,0;PAIREDR=0;PAO=20.5,20.5;PQA=440,440;PQR=0;PRO=0;QA=242074,90130;QR=267;RO=9;RPL=6814,2566;RPP=14799.4,5575.01;RPPR=22.5536;RPR=0,0;RUN=1,1;SAF=6814,2566;SAP=14799.4,5575.01;SAR=0,0;SRF=9;SRP=22.5536;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4,0:0:0:4,0:141,0:-12.1747,-1.20412,0,-12.1747,-1.20412,-12.1747	1/1:104:1,103,0:1:36:103,0:3662,0:-305.912,-27.7179,0,-306.213,-31.0061,-309.143	1/2:136:0,68,68:0:0:68,68:2425,2371:-374.432,-189.786,-169.316,-184.926,0,-164.456	1/2:237:0,126,110:0:0:126,110:4456,3877:-649.96,-307.615,-269.685,-342.347,0,-309.233	2/2:15:0,0,15:0:0:0,15:0,519:-45.599,-45.599,-45.599,-4.51545,-4.51545,0	1/2:38:0,21,17:0:0:21,17:747,596:-104.047,-47.3176,-40.996,-57.0112,0,-51.8936	1/1:112:1,111,0:1:28:111,0:3920,0:-332.838,-30.9167,0,-333.139,-33.4143,-335.356	1/1:194:1,192,0:1:28:192,0:6835,0:-576.207,-55.5818,0,-576.508,-57.7978,-578.715	1/2:35:0,22,13:0:0:22,13:785,461:-96.5023,-36.7421,-30.1194,-60.1013,0,-56.188	1/1:57:0,57,0:0:0:57,0:2043,0:-174.965,-17.1587,0,-174.965,-17.1587,-174.965	1/1:107:0,107,0:0:0:107,0:3786,0:-323.794,-32.2102,0,-323.794,-32.2102,-323.794	1/1:78:0,78,0:0:0:78,0:2773,0:-235.008,-23.4803,0,-235.008,-23.4803,-235.008	1/2:97:0,46,51:0:0:46,51:1639,1789:-267.533,-142.847,-129,-125.025,0,-109.673	1/1:131:0,131,0:0:0:131,0:4650,0:-400.869,-39.4349,0,-400.869,-39.4349,-400.869	1/2:72:0,33,39:0:0:33,39:1161,1377:-197.845,-108.867,-98.9335,-89.3147,0,-77.5745	1/1:84:0,84,0:0:0:84,0:2988,0:-257.413,-25.2865,0,-257.413,-25.2865,-257.413	1/2:87:0,43,44:0:0:43,44:1548,1552:-242.039,-123.865,-110.921,-118.458,0,-105.213	1/2:88:0,52,36:0:0:52,36:1832,1258:-238.386,-99.6386,-83.985,-139.083,0,-128.246	1/1:48:0,47,1:0:0:47,1:1676,34:-141.738,-14.1484,0,-139.409,-11.5258,-139.108	1/2:181:0,86,95:0:0:86,95:3033,3360:-499.241,-266.224,-240.336,-233.356,0,-204.758	1/1:91:0,91,0:0:0:91,0:3193,0:-275.526,-27.3937,0,-275.526,-27.3937,-275.526	1/2:106:0,43,63:0:0:43,63:1535,2227:-294.957,-175.905,-162.961,-119.394,0,-100.429	1/2:40:0,23,17:0:0:23,17:804,598:-108.621,-46.8218,-39.8981,-62.1342,0,-57.0167	1/1:97:0,97,0:0:0:97,0:3465,0:-299.614,-29.1999,0,-299.614,-29.1999,-299.614	1/1:54:0,54,0:0:0:54,0:1896,0:-163.456,-16.2556,0,-163.456,-16.2556,-163.456	1/2:398:0,218,180:0:0:218,180:7737,6314:-1097.56,-496.946,-431.321,-600.896,0,-546.711	1/1:232:0,232,0:0:0:232,0:8260,0:-713.121,-69.839,0,-713.121,-69.839,-713.121	1/2:34:0,9,25:0:0:9,25:324,879:-95.6447,-70.3723,-67.6631,-25.6176,0,-18.0918	1/1:184:1,183,0:1:20:183,0:6537,0:-561.899,-53.3897,0,-562.2,-55.0885,-563.698	1/2:171:0,86,84:0:0:86,84:2976,2982:-466.927,-236.799,-210.911,-230.199,0,-204.912	1/1:108:0,107,1:0:0:107,1:3778,36:-322.541,-32.2102,0,-319.673,-28.9902,-319.372	1/2:2:0,1,1:0:0:1,1:36,34:-5.8608,-3.04749,-2.74646,-3.15346,0,-2.85243	1/1:17:0,17,0:0:0:17,0:600,0:-52.0455,-5.11751,0,-52.0455,-5.11751,-52.0455	1/2:5:0,3,2:0:0:3,2:108,70:-14.1878,-5.94795,-5.04486,-8.58219,0,-7.98013	1/2:7:0,3,4:0:0:3,4:108,139:-19.6985,-11.4565,-10.5534,-8.58219,0,-7.37807	1/1:3:0,3,0:0:0:3,0:108,0:-9.48528,-0.90309,0,-9.48528,-0.90309,-9.48528	1/1:213:0,213,0:0:0:213,0:7559,0:-652.079,-64.1194,0,-652.079,-64.1194,-652.079	1/2:271:0,116,153:0:0:116,153:4144,5387:-751.495,-429.118,-394.199,-322.446,0,-276.388	1/2:85:0,47,38:0:0:47,38:1666,1328:-232.667,-106.345,-92.1962,-126.603,0,-115.164	1/1:4:0,4,0:0:0:4,0:144,0:-12.7816,-1.20412,0,-12.7816,-1.20412,-12.7816	1/2:121:0,55,66:0:0:55,66:1943,2303:-333.814,-182.985,-166.428,-151.11,0,-131.242	1/1:38:0,38,0:0:0:38,0:1350,0:-116.923,-11.4391,0,-116.923,-11.4391,-116.923	1/1:59:0,59,0:0:0:59,0:2084,0:-180.112,-17.7608,0,-180.112,-17.7608,-180.112	1/1:62:0,62,0:0:0:62,0:2214,0:-189.532,-18.6639,0,-189.532,-18.6639,-189.532	1/1:69:0,69,0:0:0:69,0:2450,0:-209.518,-20.7711,0,-209.518,-20.7711,-209.518	1/1:36:0,36,0:0:0:36,0:1276,0:-110.19,-10.8371,0,-110.19,-10.8371,-110.19	1/2:169:0,79,90:0:0:79,90:2814,3159:-464.971,-250.606,-226.825,-214.703,0,-187.611	1/1:107:0,106,0:0:0:106,0:3779,0:-323.47,-31.9092,0,-323.47,-31.9092,-323.47	1/1:137:0,137,0:0:0:137,0:4904,0:-419.891,-41.2411,0,-419.891,-41.2411,-419.891	1/2:208:2,103,103:2:72:103,103:3656,3645:-564.457,-283.825,-258.694,-275.341,0,-250.21	1/1:106:0,106,0:0:0:106,0:3788,0:-327.586,-31.9092,0,-327.586,-31.9092,-327.586	1/1:6:0,6,0:0:0:6,0:216,0:-18.8298,-1.80618,0,-18.8298,-1.80618,-18.8298	1/1:172:0,172,0:0:0:172,0:6163,0:-521.699,-51.7772,0,-521.699,-51.7772,-521.699	1/1:32:0,32,0:0:0:32,0:1147,0:-99.5213,-9.63296,0,-99.5213,-9.63296,-99.5213	1/2:13:0,8,5:0:0:8,5:274,180:-35.4444,-14.761,-12.3528,-21.0244,0,-19.5193	1/1:123:0,123,0:0:0:123,0:4354,0:-375.3,-37.0267,0,-375.3,-37.0267,-375.3	1/2:32:0,22,10:0:0:22,10:746,337:-83.0298,-26.4847,-19.8621,-56.8676,0,-53.8573	1/1:5:0,5,0:0:0:5,0:180,0:-15.8622,-1.50515,0,-15.8622,-1.50515,-15.8622	1/1:32:0,32,0:0:0:32,0:1136,0:-98.3134,-9.63296,0,-98.3134,-9.63296,-98.3134	1/2:82:0,46,36:0:0:46,36:1606,1248:-223.42,-98.7159,-84.8686,-125.04,0,-114.203	1/2:184:0,87,97:0:0:87,97:3063,3411:-504.478,-269.394,-243.204,-235.421,0,-206.221	1/2:9:0,4,5:0:0:4,5:144,180:-25.808,-14.6915,-13.4874,-11.4632,0,-9.95806	1/2:253:0,130,123:0:0:130,123:4640,4323:-703.293,-342.133,-302.999,-361.502,0,-324.476	1/1:209:0,207,2:0:0:207,2:7357,64:-629.649,-62.3132,0,-624.574,-56.9532,-623.972	1/2:109:1,63,45:1:28:63,45:2242,1557:-294.768,-120.895,-104.146,-172.015,0,-160.686	1/2:102:0,61,41:0:0:61,41:2188,1415:-280.825,-111.844,-93.4812,-169.261,0,-156.918	1/1:143:0,143,0:0:0:143,0:5065,0:-433.71,-43.0473,0,-433.71,-43.0473,-433.71	1/1:54:0,53,1:0:0:53,1:1908,36:-163.265,-15.9546,0,-160.397,-12.7346,-160.096	1/2:47:0,24,23:0:0:24,23:859,816:-131.878,-65.2795,-58.0548,-66.8865,0,-59.9628	1/1:82:0,82,0:0:0:82,0:2901,0:-245.262,-24.6845,0,-245.262,-24.6845,-245.262	1/2:107:0,51,56:0:0:51,56:1808,1984:-296.928,-156.626,-141.274,-140.643,0,-123.785	1/2:41:0,24,17:0:0:24,17:860,589:-113.49,-47.1056,-39.8809,-66.7238,0,-61.6063	1/1:87:0,87,0:0:0:87,0:3076,0:-260.586,-26.1896,0,-260.586,-26.1896,-260.586	1/2:72:0,49,23:0:0:49,23:1757,811:-198.658,-64.6274,-49.8769,-134.315,0,-127.391	1/1:205:0,204,0:0:0:204,0:7285,0:-628.572,-61.4101,0,-628.572,-61.4101,-628.572	1/2:122:0,64,58:0:0:64,58:2295,2011:-336.785,-159.251,-139.985,-177.874,0,-160.414	1/2:226:0,97,129:0:0:97,129:3462,4510:-622.263,-358.834,-329.635,-263.648,0,-224.815	1/2:135:0,59,75:0:0:59,75:2099,2651:-371.83,-211.972,-194.211,-159.917,0,-137.34	1/2:7:0,4,3:0:0:4,3:144,108:-19.9808,-8.99805,-7.79393,-11.33,0,-10.4269	1/2:114:0,45,69:0:0:45,69:1582,2423:-315.539,-192.261,-178.715,-123.617,0,-102.846	1/1:121:2,119,0:2:55:119,0:4218,0:-351.993,-31.2326,0,-352.595,-35.8226,-356.939	1/2:235:0,116,118:0:0:116,118:4155,4156:-650.892,-330.297,-295.377,-320.678,0,-285.157	1/2:80:0,30,50:0:0:30,50:1045,1768:-221.298,-140.917,-131.887,-80.717,0,-65.6655	1/1:104:0,104,0:0:0:104,0:3705,0:-317.001,-31.3071,0,-317.001,-31.3071,-317.001	1/1:85:0,85,0:0:0:85,0:3011,0:-257.987,-25.5876,0,-257.987,-25.5876,-257.987	1/1:129:0,129,0:0:0:129,0:4581,0:-391.762,-38.8329,0,-391.762,-38.8329,-391.762	1/1:32:0,32,0:0:0:32,0:1142,0:-96.7826,-9.63296,0,-96.7826,-9.63296,-96.7826	1/2:83:0,46,37:0:0:46,37:1618,1301:-226.314,-103.372,-89.5242,-123.222,0,-112.084	1/2:94:0,44,50:0:0:44,50:1554,1757:-258.171,-140.027,-126.781,-118.424,0,-103.373	1/2:92:0,46,45:0:0:46,45:1624,1564:-250.109,-123.701,-109.854,-126.501,0,-112.955	1/2:176:0,82,93:0:0:82,93:2897,3243:-480.838,-256.209,-231.524,-224.763,0,-196.767	1/2:63:0,24,39:0:0:24,39:855,1392:-176.389,-110.59,-103.365,-66.1414,0,-54.4012	1/1:63:0,63,0:0:0:63,0:2246,0:-192.431,-18.9649,0,-192.431,-18.9649,-192.431	1/1:99:0,99,0:0:0:99,0:3530,0:-302.164,-29.802,0,-302.164,-29.802,-302.164
chr11	27701207	.	G	A	24574.2	PASS	AB=0.52853;ABP=22.3391;AC=48;AF=0.258065;AN=186;AO=1467;CIGAR=1X;DP=5976;DPB=5976;DPRA=0.937838;EPP=3179.88;EPPR=9694.52;GTI=1;LEN=1;MEANALT=1.03636;MQM=59.8882;MQMR=59.9807;NS=93;NUMALT=1;ODDS=1.0796;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52190;QR=160591;RO=4507;RPL=1;RPP=3179.88;RPPR=9694.52;RPR=1466;RUN=1;SAF=1467;SAP=3188.56;SAR=0;SRF=4507;SRP=9789.84;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:94:35,59:35:1252:59:2112:-162.052,0,-84.6836	0/1:158:70,88:70:2500:88:3115:-232.925,0,-177.69	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/1:45:21,24:21:752:24:848:-63.0933,0,-54.4599	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/0:95:94,1:94:3348:1:36:0,-24.9996,-297.94	0/1:133:68,65:68:2408:65:2319:-168.932,0,-176.941	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.903	0/0:48:48,0:48:1697:0:0:0,-14.4494,-153.014	0/0:88:88,0:88:3147:0:0:0,-26.4906,-283.455	0/1:58:31,27:31:1100:27:964:-69.6171,0,-81.8505	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:66:30,36:30:1058:36:1296:-97.0736,0,-75.6616	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/1:33:17,16:17:612:16:559:-40.7036,0,-45.4794	0/1:26:12,14:12:428:14:504:-37.8713,0,-31.032	0/0:90:90,0:90:3220:0:0:0,-27.0927,-290.023	0/1:68:21,47:21:729:47:1670:-130.116,0,-45.4587	0/0:141:141,0:141:5006:0:0:0,-42.4452,-450.691	0/1:49:10,39:10:360:39:1377:-109.474,0,-17.9938	0/1:67:29,38:29:1044:38:1328:-99.6479,0,-74.1058	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:61:61,0:61:2156:0:0:0,-18.3628,-194.303	0/1:195:89,106:89:3157:106:3750:-278.999,0,-225.654	0/0:134:134,0:134:4787:0:0:0,-40.338,-430.985	0/1:21:12,9:12:419:9:320:-22.8207,0,-31.721	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.747	0/1:76:37,39:37:1316:39:1377:-101.348,0,-95.8635	0/0:61:58,3:58:2068:3:108:0,-8.28766,-176.316	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/0:15:14,1:14:496:1:36:0,-0.917175,-41.376	0/0:177:177,0:177:6323:0:0:0,-53.2823,-569.162	0/1:74:51,23:51:1824:23:809:-50.849,0,-142.165	0/1:56:28,28:28:999:28:1000:-73.4577,0,-73.3668	.:.:.:.:.:.:.:.	0/1:93:45,48:45:1604:48:1700:-125.274,0,-116.654	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:119:118,1:118:4177:1:36:0,-32.2243,-372.517	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.227	0/0:58:58,0:58:2064:0:0:0,-17.4597,-186.031	0/0:102:102,0:102:3628:0:0:0,-30.7051,-326.727	0/1:72:34,38:34:1205:38:1350:-100.101,0,-87.0797	0/0:77:76,1:76:2703:1:36:0,-19.581,-239.914	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:51:24,27:24:860:27:956:-71.0026,0,-62.3693	0/0:117:117,0:117:4192:0:0:0,-35.2205,-377.461	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/1:10:5,5:5:176:5:180:-13.5418,0,-13.1747	0/0:86:85,1:85:3021:1:36:0,-22.2903,-268.522	0/1:38:17,21:17:612:21:731:-54.6698,0,-43.9743	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:69:25,44:25:896:44:1568:-120.639,0,-60.1877	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:122:60,62:60:2148:62:2220:-163.336,0,-156.862	0/0:101:98,2:98:3512:2:68:0,-23.9985,-309.823	0/1:52:21,31:21:748:31:1112:-84.7378,0,-51.9917	0/1:45:24,21:24:852:21:729:-52.3823,0,-63.454	0/0:95:95,0:95:3364:0:0:0,-28.5978,-302.977	0/0:109:107,2:107:3820:2:68:0,-26.3546,-337.54	0/1:33:18,15:18:644:15:540:-39.0025,0,-48.352	0/0:35:34,1:34:1216:1:36:0,-6.93777,-106.148	0/1:39:17,22:17:612:22:792:-59.8655,0,-43.6733	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/0:83:83,0:83:2950:0:0:0,-24.9855,-265.734	0/1:46:23,23:23:828:23:820:-60.2751,0,-60.9921	0/0:107:107,0:107:3778:0:0:0,-32.2102,-340.22	0/1:96:46,49:46:1625:49:1764:-129.656,0,-117.579	0/1:71:34,37:34:1201:37:1324:-98.0881,0,-87.0205	0/1:46:29,17:29:1036:17:608:-41.2046,0,-79.7065	0/1:11:7,4:7:252:4:136:-9.26421,0,-19.7176	0/1:70:30,40:30:1076:40:1416:-106.642,0,-76.0808	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.147	0/1:143:77,66:77:2736:66:2364:-169.97,0,-203.433	0/1:55:27,28:27:959:28:1004:-74.1169,0,-70.0687	0/0:49:49,0:49:1742:0:0:0,-14.7505,-157.063	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.503	0/0:122:122,0:122:4368:0:0:0,-36.7257,-393.292	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/1:63:33,30:33:1163:30:1076:-78.188,0,-86.0112	0/1:54:25,29:25:880:29:1036:-77.2983,0,-63.2621	0/1:31:17,14:17:604:14:492:-35.2773,0,-45.3587	0/1:102:49,53:49:1731:53:1896:-140.21,0,-125.364	0/1:71:27,44:27:951:44:1572:-120.398,0,-64.5312	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.662	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.918
chr11	27701250	.	ATA	GTA,GTT	296225	PASS	AB=0.591855,0.406956;ABP=249.543,255.967;AC=157,29;AF=0.844086,0.155914;AN=186;AO=9337,1380;CIGAR=1X2M,1X1M1X;DP=10730;DPB=10734.3;DPRA=0,1.15552;EPP=20278,2990.96;EPPR=11.6962;GTI=2;LEN=1,3;MEANALT=1.45161,2.08824;MQM=59.9273,57.2964;MQMR=60;NS=93;NUMALT=2;ODDS=1.4334;PAIRED=0,0;PAIREDR=0;PAO=5.5,7.5;PQA=196,232;PQR=0;PRO=0;QA=330711,47606;QR=142;RO=4;RPL=4325,907;RPP=112.774,299.394;RPPR=3.0103;RPR=5012,473;RUN=1,1;SAF=4325,906;SAP=112.774,296.669;SAR=5012,474;SRF=2;SRP=3.0103;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44,0:0:0:44,0:1558,0:-140.393,-13.2453,0,-140.393,-13.2453,-140.393	1/1:197:0,197,0:0:0:197,0:7032,0:-632.813,-59.3029,0,-632.813,-59.3029,-632.813	1/1:61:0,61,0:0:0:61,0:2180,0:-196.464,-18.3628,0,-196.464,-18.3628,-196.464	1/2:219:0,133,86:0:0:133,86:4706,2981:-625.53,-242.483,-202.447,-383.337,0,-357.448	1/2:27:0,16,11:0:0:16,11:549,384:-76.1524,-31.583,-26.7665,-44.916,0,-41.6046	1/1:36:0,36,0:0:0:36,0:1288,0:-116.224,-10.8371,0,-116.224,-10.8371,-116.224	1/1:122:0,121,0:0:0:121,0:4268,0:-384.041,-36.4246,0,-384.041,-36.4246,-384.041	1/1:242:0,242,0:0:0:242,0:8615,0:-775.352,-72.8493,0,-775.352,-72.8493,-775.352	1/1:91:0,91,0:0:0:91,0:3203,0:-288.407,-27.3937,0,-288.407,-27.3937,-288.407	1/1:124:0,124,0:0:0:124,0:4402,0:-396.354,-37.3277,0,-396.354,-37.3277,-396.354	1/1:99:0,99,0:0:0:99,0:3505,0:-315.662,-29.802,0,-315.662,-29.802,-315.662	1/1:161:0,161,0:0:0:161,0:5672,0:-510.588,-48.4658,0,-510.588,-48.4658,-510.588	1/1:59:0,59,0:0:0:59,0:2090,0:-188.369,-17.7608,0,-188.369,-17.7608,-188.369	1/1:91:0,91,0:0:0:91,0:3239,0:-291.733,-27.3937,0,-291.733,-27.3937,-291.733	1/2:100:0,65,35:0:0:65,35:2289,1237:-287.389,-101.039,-81.472,-186.645,0,-176.108	1/1:80:0,80,0:0:0:80,0:2829,0:-254.849,-24.0824,0,-254.849,-24.0824,-254.849	1/1:52:0,52,0:0:0:52,0:1856,0:-167.32,-15.6536,0,-167.32,-15.6536,-167.32	1/1:48:0,48,0:0:0:48,0:1719,0:-154.995,-14.4494,0,-154.995,-14.4494,-154.995	1/1:124:0,124,0:0:0:124,0:4406,0:-396.658,-37.3277,0,-396.658,-37.3277,-396.658	1/2:111:0,62,49:0:0:62,49:2180,1700:-315.97,-138.533,-119.869,-177.786,0,-163.035	1/1:206:0,206,0:0:0:206,0:7295,0:-656.598,-62.0122,0,-656.598,-62.0122,-656.598	1/2:107:0,31,76:0:0:31,76:1104,2644:-305.021,-215.037,-205.705,-90.3375,0,-67.4592	1/2:115:0,76,38:0:0:76,38:2706,1262:-322.637,-102.072,-79.1939,-220.546,0,-209.107	1/1:97:0,97,0:0:0:97,0:3462,0:-311.521,-29.1999,0,-311.521,-29.1999,-311.521	1/1:81:0,81,0:0:0:81,0:2859,0:-257.525,-24.3834,0,-257.525,-24.3834,-257.525	1/2:534:0,250,284:0:0:250,284:8829,9815:-1514.45,-795.478,-720.221,-719.323,0,-633.83	1/1:265:0,265,0:0:0:265,0:9415,0:-847.275,-79.773,0,-847.275,-79.773,-847.275	1/2:37:0,28,9:0:0:28,9:996,320:-107.604,-26.4333,-18.0045,-81.526,0,-78.8168	1/1:229:0,228,0:0:0:228,0:8095,0:-728.182,-68.6348,0,-728.182,-68.6348,-728.182	1/2:159:0,118,41:0:0:118,41:4195,1390:-454.511,-112.906,-77.3847,-341.805,0,-329.463	1/1:170:0,167,3:0:0:167,3:5909,98:-531.568,-50.272,0,-523.654,-42.0313,-522.751	1/2:10:0,6,4:0:0:6,4:216,144:-29.734,-12.1095,-10.3033,-17.9843,0,-16.7802	1/1:14:0,14,0:0:0:14,0:500,0:-45.3362,-4.21442,0,-45.3362,-4.21442,-45.3362	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/1:15:0,15,0:0:0:15,0:527,0:-47.7602,-4.51545,0,-47.7602,-4.51545,-47.7602	1/1:352:0,352,0:0:0:352,0:12394,0:-1115.28,-105.963,0,-1115.28,-105.963,-1115.28	1/2:133:1,110,22:1:34:110,22:3856,721:-368.962,-55.47,-25.1152,-311.027,0,-307.162	1/1:53:0,53,0:0:0:53,0:1884,0:-169.839,-15.9546,0,-169.839,-15.9546,-169.839	.:.:.:.:.:.:.:.	1/2:111:0,68,43:0:0:68,43:2403,1489:-316.917,-121.341,-100.871,-195.925,0,-182.981	1/1:53:0,53,0:0:0:53,0:1876,0:-169.118,-15.9546,0,-169.118,-15.9546,-169.118	1/1:170:0,168,2:0:0:168,2:5960,70:-536.156,-50.573,0,-530.461,-44.5278,-529.859	1/1:157:1,156,0:1:36:156,0:5551,0:-496.05,-43.6634,0,-496.351,-46.9607,-499.288	1/1:135:0,135,0:0:0:135,0:4756,0:-428.176,-40.6391,0,-428.176,-40.6391,-428.176	1/1:151:0,151,0:0:0:151,0:5377,0:-484.062,-45.4555,0,-484.062,-45.4555,-484.062	1/1:80:0,78,0:0:0:78,0:2768,0:-249.003,-23.4803,0,-249.003,-23.4803,-249.003	1/1:212:0,212,0:0:0:212,0:7453,0:-670.82,-63.8184,0,-670.82,-63.8184,-670.82	1/1:125:0,125,0:0:0:125,0:4402,0:-396.328,-37.6288,0,-396.328,-37.6288,-396.328	1/2:94:0,67,27:0:0:67,27:2370,950:-270.178,-77.1949,-57.0259,-193.334,0,-185.206	1/1:161:0,159,2:0:0:159,2:5637,72:-507.093,-47.8638,0,-501.218,-41.6291,-500.616	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:172:0,172,0:0:0:172,0:6114,0:-550.305,-51.7772,0,-550.305,-51.7772,-550.305	1/1:103:0,103,0:0:0:103,0:3663,0:-329.804,-31.0061,0,-329.804,-31.0061,-329.804	1/1:9:0,9,0:0:0:9,0:316,0:-28.7789,-2.70927,0,-28.7789,-2.70927,-28.7789	1/1:162:0,162,0:0:0:162,0:5737,0:-516.452,-48.7669,0,-516.452,-48.7669,-516.452	1/2:42:0,22,20:0:0:22,20:788,692:-120.805,-56.5342,-49.9116,-64.6221,0,-58.6015	1/1:6:0,6,0:0:0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chr11	27701299	.	GATTG	CATTG,CATTT	159408	PASS	AB=0.39815,0.5996;ABP=363.507,347.759;AC=138,46;AF=0.75,0.25;AN=184;AO=5110,2410;CIGAR=1X4M,1X3M1X;DP=7537;DPB=7537.6;DPRA=0,1.26077;EPP=11099.2,5236.26;EPPR=5.18177;GTI=4;LEN=1,5;MEANALT=1.69565,2.13462;MQM=59.9297,56.1954;MQMR=60;NS=92;NUMALT=2;ODDS=3.23656;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=182123,85320;QR=133;RO=4;RPL=5110,2410;RPP=11099.2,5236.26;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=11099.2,5236.26;SAR=5110,2410;SRF=1;SRP=5.18177;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:151:0,149,0:0:0:149,0:5295,0:-476.279,-44.8535,0,-476.279,-44.8535,-476.279	1/2:80:0,30,50:0:0:30,50:1072,1762:-231.12,-143.714,-134.683,-87.7616,0,-72.7101	1/2:180:0,64,114:0:0:64,114:2284,4020:-513.242,-327.079,-307.813,-186.226,0,-151.909	1/2:39:0,10,29:0:0:10,29:360,1027:-113.335,-83.959,-80.9487,-29.734,0,-21.0041	1/2:51:0,14,37:0:0:14,37:489,1314:-146.937,-107.164,-102.949,-40.1245,0,-28.9864	1/1:66:0,66,0:0:0:66,0:2345,0:-211.308,-19.868,0,-211.308,-19.868,-211.308	1/1:160:0,158,2:0:0:158,2:5605,69:-504.227,-47.5627,0,-498.623,-41.6137,-498.021	1/2:69:0,27,42:0:0:27,42:960,1484:-198.89,-120.656,-112.528,-78.5885,0,-65.9452	1/1:46:0,46,0:0:0:46,0:1652,0:-148.951,-13.8474,0,-148.951,-13.8474,-148.951	1/1:47:0,47,0:0:0:47,0:1646,0:-148.425,-14.1484,0,-148.425,-14.1484,-148.425	1/1:77:0,77,0:0:0:77,0:2742,0:-247.006,-23.1793,0,-247.006,-23.1793,-247.006	1/2:68:0,32,36:0:0:32,36:1152,1284:-198.919,-104.92,-95.2867,-94.3572,0,-83.5201	1/1:50:0,50,0:0:0:50,0:1796,0:-161.922,-15.0515,0,-161.922,-15.0515,-161.922	1/2:73:0,39,34:0:0:39,34:1380,1206:-210.917,-98.5136,-86.7734,-112.758,0,-102.523	1/1:45:0,45,0:0:0:45,0:1601,0:-144.378,-13.5464,0,-144.378,-13.5464,-144.378	1/2:75:0,36,39:0:0:36,39:1288,1393:-218.708,-113.678,-102.841,-105.387,0,-93.6463	1/2:69:1,37,31:1:36:37,31:1324,1084:-192.883,-85.2137,-77.0134,-105.026,0,-98.6317	1/1:31:0,31,0:0:0:31,0:1099,0:-99.1873,-9.33193,0,-99.1873,-9.33193,-99.1873	1/2:152:0,41,110:0:0:41,110:1453,3877:-433.455,-315.087,-302.745,-118.432,0,-85.3185	1/1:70:0,67,3:0:0:67,3:2370,108:-213.196,-20.169,0,-204.386,-10.9997,-203.483	1/2:80:0,19,61:0:0:19,61:684,2166:-232.22,-176.408,-170.689,-56.17,0,-37.8071	1/2:91:0,51,40:0:0:51,40:1836,1423:-266.098,-116.288,-100.935,-150.168,0,-138.127	1/1:79:0,79,0:0:0:79,0:2793,0:-251.337,-23.7814,0,-251.337,-23.7814,-251.337	1/1:27:0,27,0:0:0:27,0:968,0:-87.4149,-8.12781,0,-87.4149,-8.12781,-87.4149	1/2:435:0,170,265:0:0:170,265:6085,9395:-1259.13,-762.917,-711.742,-496.574,0,-416.801	1/1:143:0,143,0:0:0:143,0:5053,0:-454.912,-43.0473,0,-454.912,-43.0473,-454.912	1/2:30:0,18,12:0:0:18,12:644,412:-86.2694,-33.746,-28.3275,-52.8721,0,-49.2597	1/1:149:0,149,0:0:0:149,0:5340,0:-480.719,-44.8535,0,-480.719,-44.8535,-480.719	1/2:170:0,85,85:0:0:85,85:3024,3011:-490.962,-244.515,-218.927,-246.801,0,-221.214	1/1:110:0,109,1:0:0:109,1:3859,36:-347.117,-32.8123,0,-344.184,-29.5201,-343.883	1/2:16:0,4,12:0:0:4,12:144,426:-46.806,-35.0551,-33.851,-12.1095,0,-8.49714	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:8:0,3,5:0:0:3,5:108,179:-23.7051,-14.8915,-13.9885,-9.17208,0,-7.66693	1/2:10:0,4,6:0:0:4,6:144,215:-29.5675,-17.8166,-16.6125,-12.1095,0,-10.3033	.:.:.:.:.:.:.:.	1/1:188:0,188,0:0:0:188,0:6732,0:-605.938,-56.5936,0,-605.938,-56.5936,-605.938	1/2:166:1,59,106:1:36:59,106:2108,3770:-475.683,-304.112,-289.288,-168.931,0,-139.96	1/2:58:0,28,30:0:0:28,30:1000,1072:-168.564,-87.033,-78.6041,-81.8865,0,-72.8556	.:.:.:.:.:.:.:.	1/2:99:0,27,72:0:0:27,72:964,2578:-289.031,-210.44,-202.312,-78.949,0,-57.2749	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/1:58:0,57,0:0:0:57,0:2039,0:-183.452,-17.1587,0,-183.452,-17.1587,-183.452	1/1:100:0,100,0:0:0:100,0:3584,0:-322.711,-30.103,0,-322.711,-30.103,-322.711	1/1:86:0,86,0:0:0:86,0:3086,0:-277.939,-25.8886,0,-277.939,-25.8886,-277.939	1/1:54:0,54,0:0:0:54,0:1902,0:-171.416,-16.2556,0,-171.416,-16.2556,-171.416	1/2:96:0,47,49:0:0:47,49:1661,1755:-278.667,-143.396,-129.247,-135.627,0,-120.877	1/1:144:0,143,0:0:0:143,0:5087,0:-457.666,-43.0473,0,-457.666,-43.0473,-457.666	1/1:87:0,86,1:0:0:86,1:3052,36:-274.55,-25.8886,0,-271.613,-22.5923,-271.312	1/2:148:0,45,103:0:0:45,103:1608,3637:-427.294,-296.242,-282.696,-131.408,0,-100.402	1/1:52:0,52,0:0:0:52,0:1860,0:-167.679,-15.6536,0,-167.679,-15.6536,-167.679	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:100:0,100,0:0:0:100,0:3553,0:-319.979,-30.103,0,-319.979,-30.103,-319.979	1/1:59:0,58,0:0:0:58,0:2065,0:-185.689,-17.4597,0,-185.689,-17.4597,-185.689	1/2:20:0,4,16:0:0:4,16:144,561:-57.7409,-45.9893,-44.7852,-12.1095,0,-7.29302	1/1:78:0,78,0:0:0:78,0:2772,0:-249.723,-23.4803,0,-249.723,-23.4803,-249.723	1/2:32:0,9,23:0:0:9,23:324,810:-92.6615,-66.2225,-63.5132,-26.7966,0,-19.8729	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:6:0,6,0:0:0:6,0:2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chr11	27712165	.	G	C	28341.1	PASS	AB=0.51357;ABP=8.37325;AC=46;AF=0.247312;AN=186;AO=1729;CIGAR=1X;DP=6973;DPB=6973;DPRA=1.07694;EPP=3757.49;EPPR=11344.6;GTI=0;LEN=1;MEANALT=1.06;MQM=46.4083;MQMR=59.9756;NS=93;NUMALT=1;ODDS=4.23674;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61774;QR=187108;RO=5239;RPL=0;RPP=3757.49;RPPR=11344.6;RPR=1729;RUN=1;SAF=1729;SAP=3757.49;SAR=0;SRF=5239;SRP=11379.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.415	0/0:140:140,0:140:5036:0:0:0,-42.1442,-453.383	0/1:114:49,65:49:1764:65:2324:-167.707,0,-124.726	0/1:167:91,76:91:3256:76:2698:-189.964,0,-242.989	0/1:56:25,31:25:885:31:1104:-82.2652,0,-63.1088	0/1:38:19,19:19:665:19:680:-48.8016,0,-48.7336	0/0:107:107,0:107:3828:0:0:0,-32.2102,-344.717	0/0:87:87,0:87:3093:0:0:0,-26.1896,-278.597	0/1:84:35,49:35:1256:49:1751:-127.468,0,-88.0588	0/0:66:66,0:66:2344:0:0:0,-19.868,-211.217	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.135	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:68:39,29:39:1404:29:1018:-69.4345,0,-106.189	0/0:85:85,0:85:3021:0:0:0,-25.5875,-272.12	0/1:39:19,20:19:684:20:720:-52.5308,0,-50.1502	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:58:24,34:24:845:34:1224:-90.077,0,-58.9074	0/1:35:18,17:18:648:17:612:-43.6875,0,-48.1158	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:103:57,46:57:2033:46:1644:-115.943,0,-152.234	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/1:128:49,79:49:1760:79:2839:-215.156,0,-120.152	0/1:81:50,31:50:1800:31:1112:-74.8746,0,-137.899	0/0:122:121,1:121:4352:1:36:0,-33.1469,-388.274	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:288:139,148:139:4988:148:5278:-384.058,0,-362.313	0/0:79:79,0:79:2813:0:0:0,-23.7814,-253.408	0/1:19:8,11:8:288:11:392:-29.4227,0,-20.5478	0/0:154:154,0:154:5528:0:0:0,-46.3586,-497.643	0/1:126:52,74:52:1849:74:2640:-198.008,0,-128.758	0/0:110:107,3:107:3745:3:108:0,-23.1077,-327.243	0/1:8:5,3:5:165:3:108:-7.61231,0,-12.7654	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:8:6,2:6:216:2:72:-4.28168,0,-17.3823	0/1:18:10,8:10:360:8:284:-19.9248,0,-27.3258	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:152:152,0:152:5445:0:0:0,-45.7566,-490.176	0/1:166:67,99:67:2404:99:3543:-264.415,0,-166.274	0/1:48:21,27:21:741:27:951:-69.6155,0,-52.5622	.:.:.:.:.:.:.:.	0/1:88:56,32:56:2008:32:1152:-76.3783,0,-154.503	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:98:98,0:98:3425:0:0:0,-29.5009,-308.451	0/0:60:60,0:60:2128:0:0:0,-18.0618,-191.786	0/0:45:45,0:45:1601:0:0:0,-13.5463,-144.378	0/0:135:135,0:135:4818:0:0:0,-40.639,-433.755	0/1:71:39,32:39:1400:32:1148:-79.6125,0,-104.926	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.876	0/0:84:84,0:84:2993:0:0:0,-25.2865,-269.601	0/1:90:51,39:51:1832:39:1381:-96.3193,0,-138.068	0/0:163:163,0:163:5820:0:0:0,-49.0679,-523.912	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:75:75,0:75:2665:0:0:0,-22.5772,-240.095	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:21:12,9:12:432:9:324:-21.9874,0,-32.8996	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:79:40,39:40:1436:39:1400:-100.778,0,-105.756	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:50:15,35:15:521:35:1237:-95.9324,0,-32.1648	0/0:93:90,2:90:3240:2:68:0,-21.6228,-285.388	0/1:8:5,3:5:180:3:108:-6.68101,0,-14.1438	0/1:133:72,61:72:2577:61:2188:-154.053,0,-192.132	0/0:89:88,0:88:3118:0:0:0,-26.4906,-280.485	0/1:54:30,24:30:1076:24:856:-60.1973,0,-80.8972	0/1:42:24,18:24:864:18:644:-44.9594,0,-65.4393	0/0:199:198,1:198:7081:1:36:0,-56.3315,-633.776	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.616	0/1:19:10,9:10:351:9:324:-23.6154,0,-26.2071	0/0:55:55,0:55:1946:0:0:0,-16.5566,-175.412	0/1:104:52,52:52:1845:52:1859:-134.824,0,-135.021	0/1:19:6,13:6:212:13:468:-36.1353,0,-13.7052	0/0:93:92,0:92:3262:0:0:0,-27.6948,-293.588	0/1:52:23,29:23:819:29:1031:-74.9147,0,-58.378	0/0:80:80,0:80:2872:0:0:0,-24.0824,-257.697	0/1:105:56,49:56:2008:49:1747:-124.401,0,-149.385	0/1:101:56,45:56:2004:45:1602:-110.197,0,-150.23	0/1:46:19,27:19:680:27:972:-72.0652,0,-47.6818	0/1:17:9,8:9:324:8:280:-19.9395,0,-24.3883	0/1:61:36,25:36:1269:25:900:-62.0234,0,-96.1479	0/0:63:63,0:63:2244:0:0:0,-18.9649,-202.221	0/1:149:76,72:76:2728:72:2568:-184.35,0,-200.85	0/1:145:54,91:54:1928:91:3264:-247.588,0,-130.147	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:65:65,0:65:2320:0:0:0,-19.5669,-209.061	0/0:110:110,0:110:3921:0:0:0,-33.1133,-353.083	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:42:18,24:18:639:24:856:-61.8535,0,-45.195	0/1:64:37,27:37:1313:27:968:-65.0587,0,-99.2038	0/1:33:12,21:12:432:21:756:-58.0409,0,-29.2872	0/1:70:26,44:26:924:44:1576:-119.549,0,-62.4056	0/1:38:12,26:12:417:26:923:-71.3968,0,-26.4211	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211
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chr11	27749137	.	A	C	31478.6	PASS	AB=0.501602;ABP=3.09377;AC=47;AF=0.252688;AN=186;AO=1900;CIGAR=1X;DP=7703;DPB=7703;DPRA=1.09607;EPP=4128.81;EPPR=12604.1;GTI=2;LEN=1;MEANALT=1;MQM=59.9363;MQMR=59.9885;NS=93;NUMALT=1;ODDS=0.68304;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67720;QR=207555;RO=5803;RPL=0;RPP=4128.81;RPPR=12595.4;RPR=1900;RUN=1;SAF=0;SAP=4128.81;SAR=1900;SRF=1;SRP=12595.4;SRR=5802;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:12,2:12:432:2:67:-2.14842,0,-35.0068	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.978	0/1:120:54,66:54:1927:66:2343:-175.006,0,-137.582	0/1:183:83,100:83:2980:100:3588:-268.038,0,-213.343	0/1:39:20,19:20:716:19:684:-50.1502,0,-53.0275	0/1:46:19,27:19:680:27:960:-72.8689,0,-47.6818	0/0:197:197,0:197:7039:0:0:0,-59.3029,-633.573	0/0:147:144,3:144:5143:3:108:0,-34.1762,-452.934	0/1:111:48,63:48:1724:63:2235:-167.999,0,-122.031	0/0:125:124,1:124:4431:1:36:0,-34.0305,-395.363	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/1:90:38,52:38:1360:52:1852:-139.859,0,-95.6079	0/0:82:80,2:80:2864:2:72:0,-17.8477,-251.161	0/1:78:38,40:38:1364:40:1414:-104.076,0,-99.5804	0/0:41:41,0:41:1451:0:0:0,-12.3422,-130.885	0/1:64:30,34:30:1060:34:1207:-89.6694,0,-76.4454	0/1:59:30,29:30:1080:29:1040:-76.1536,0,-79.7525	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:149:76,73:76:2736:73:2615:-190.737,0,-201.628	0/0:94:94,0:94:3357:0:0:0,-28.2968,-302.341	0/1:105:42,63:42:1504:63:2248:-170.975,0,-104.046	0/1:88:38,50:38:1360:50:1775:-133.542,0,-96.21	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:66:66,0:66:2347:0:0:0,-19.868,-211.489	0/1:287:158,129:158:5664:129:4583:-326.217,0,-423.483	0/0:181:181,0:181:6466:0:0:0,-54.4864,-582.026	0/1:23:11,12:11:392:12:428:-31.9351,0,-28.6964	0/0:165:165,0:165:5924:0:0:0,-49.6699,-533.266	0/1:115:50,65:50:1783:65:2305:-173.091,0,-126.134	0/0:126:124,2:124:4429:2:72:0,-31.0931,-391.944	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:191:191,0:191:6832:0:0:0,-57.4967,-614.951	0/1:146:88,58:88:3156:58:2069:-142.338,0,-240.314	0/1:49:27,22:27:959:22:780:-55.7726,0,-71.8749	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:188:103,85:103:3696:85:3021:-215.527,0,-276.248	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.894	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/0:133:133,0:133:4752:0:0:0,-40.037,-427.839	0/1:112:39,73:39:1396:73:2620:-202.332,0,-92.2237	0/0:157:155,2:155:5552:2:72:0,-40.425,-492.965	0/0:137:137,0:137:4908:0:0:0,-41.2411,-441.871	0/1:98:51,47:51:1836:47:1684:-122.344,0,-136.02	0/0:53:52,1:52:1864:1:36:0,-12.3563,-164.441	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.721	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:19:11,8:11:392:8:280:-19.8197,0,-29.9005	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/1:85:58,27:58:2072:27:972:-62.2104,0,-161.163	.:.:.:.:.:.:.:.	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:36:14,22:14:504:22:788:-60.4077,0,-34.861	0/0:119:116,3:116:4127:3:104:0,-26.1198,-361.895	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:161:86,75:86:3088:75:2662:-191.357,0,-229.681	0/0:159:154,5:154:5524:5:176:0,-31.6787,-481.099	0/1:109:45,64:45:1605:64:2287:-173.279,0,-111.926	0/1:38:19,19:19:680:19:684:-50.4512,0,-50.09	0/0:137:137,0:137:4872:0:0:0,-41.2411,-438.626	0/0:84:83,1:83:2971:1:36:0,-21.6882,-264.024	0/1:20:6,14:6:216:14:496:-38.9537,0,-13.7699	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:105:51,54:51:1828:54:1936:-142.908,0,-133.193	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/1:70:48,22:48:1720:22:764:-48.0053,0,-134.013	0/0:131:131,0:131:4683:0:0:0,-39.4349,-421.631	0/1:76:26,50:26:932:50:1787:-138.234,0,-61.3206	0/1:56:31,25:31:1116:25:877:-62.3799,0,-83.8242	0/1:73:45,28:45:1600:28:970:-65.6322,0,-122.315	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:46:23,23:23:828:23:824:-60.6359,0,-60.9967	0/0:89:88,1:88:3151:1:36:0,-23.1934,-280.216	0/1:174:86,88:86:3054:88:3133:-229.816,0,-222.708	0/1:100:50,50:50:1792:50:1800:-132.179,0,-131.459	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.835	0/0:137:137,0:137:4892:0:0:0,-41.2411,-440.408	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/1:74:41,33:41:1467:33:1188:-84.9524,0,-110.049	0/1:71:44,27:44:1555:27:972:-66.4248,0,-118.868	0/1:52:31,21:31:1091:21:756:-52.7137,0,-82.8452	0/1:84:39,45:39:1400:45:1608:-119.724,0,-101.013	0/1:71:25,46:25:892:46:1630:-125.614,0,-59.2266	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:96:96,0:96:3412:0:0:0,-28.8989,-307.294
chr11	27845714	.	C	T	53358.8	PASS	AB=0.671961;ABP=1118.76;AC=48;AF=0.255319;AN=188;AO=2937;CIGAR=1X;DP=8034;DPB=8034;DPRA=1.33209;EPP=6371.94;EPPR=11031.9;GTI=9;LEN=1;MEANALT=1.07407;MQM=59.9469;MQMR=59.9982;NS=94;NUMALT=1;ODDS=0.527139;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104923;QR=181646;RO=5091;RPL=1;RPP=6371.94;RPPR=11031.9;RPR=2936;RUN=1;SAF=0;SAP=6380.62;SAR=2937;SRF=0;SRP=11058;SRR=5091;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:116:24,92:24:841:92:3285:-260.843,0,-41.0869	0/1:198:44,154:44:1576:154:5475:-433.278,0,-82.5276	0/1:31:7,24:7:252:24:852:-67.6679,0,-13.697	0/1:48:12,36:12:432:36:1296:-102.494,0,-24.7718	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082	0/1:84:28,56:28:1000:56:1985:-153.636,0,-65.0289	0/0:72:72,0:72:2563:0:0:0,-21.6742,-230.92	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:82:82,0:82:2864:0:0:0,-24.6845,-257.997	0/1:74:27,47:27:955:47:1680:-129.21,0,-63.9886	0/0:118:118,0:118:4203:0:0:0,-35.5215,-378.453	0/1:62:24,38:24:860:38:1360:-104.034,0,-59.058	0/0:64:64,0:64:2272:0:0:0,-19.2659,-204.74	0/1:85:41,44:41:1453:44:1568:-115.824,0,-105.476	0/1:60:24,36:24:849:36:1287:-98.071,0,-58.666	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:172:28,144:28:1004:144:5136:-410.602,0,-38.8987	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/1:129:22,107:22:784:107:3806:-303.886,0,-32.051	0/1:70:30,40:30:1059:40:1440:-108.826,0,-74.5483	0/0:100:98,2:98:3500:2:72:0,-23.2663,-308.375	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:307:91,215:91:3236:215:7701:-600.646,0,-198.986	0/0:113:113,0:113:4020:0:0:0,-34.0164,-361.989	0/1:45:22,23:22:788:23:828:-61.2978,0,-57.6984	0/0:169:169,0:169:5988:0:0:0,-50.8741,-539.028	0/1:159:36,122:36:1296:122:4372:-345.729,0,-69.0214	0/0:62:59,3:59:2112:3:104:0,-8.96202,-180.647	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:222:222,0:222:7964:0:0:0,-66.8287,-716.78	0/1:203:67,136:67:2395:136:4837:-374.377,0,-154.697	0/1:82:43,39:43:1544:39:1395:-101.164,0,-114.569	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:124:27,97:27:960:97:3476:-275.724,0,-49.3886	0/0:46:46,0:46:1647:0:0:0,-13.8474,-148.518	0/0:84:83,0:83:2941:0:0:0,-24.9855,-264.565	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:62:62,0:62:2182:0:0:0,-18.6639,-196.643	0/1:114:15,99:15:525:99:3534:-283.952,0,-13.2606	0/0:100:97,3:97:3449:3:108:0,-20.0278,-300.548	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:126:43,83:43:1536:83:2960:-228.704,0,-100.603	0/0:132:132,0:132:4709:0:0:0,-39.736,-423.969	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.384	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:27:17,10:17:604:10:352:-23.8904,0,-46.5628	0/0:76:76,0:76:2711:0:0:0,-22.8783,-244.234	0/1:21:6,15:6:216:15:536:-42.2532,0,-13.4689	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:70:14,56:14:495:56:2000:-159.202,0,-23.8109	0/0:190:190,0:190:6786:0:0:0,-57.1957,-610.813	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:150:34,116:34:1216:116:4155:-328.978,0,-64.5921	0/0:120:119,1:119:4264:1:36:0,-32.5253,-380.34	0/1:86:25,61:25:892:61:2185:-171.027,0,-54.7111	0/1:70:20,50:20:720:50:1796:-140.85,0,-44.0567	0/0:91:91,0:91:3242:0:0:0,-27.3937,-292.001	0/0:152:149,3:149:5304:3:108:0,-35.6814,-467.421	0/1:29:10,19:10:360:19:684:-53.1605,0,-24.0144	0/1:107:34,73:34:1207:73:2604:-202.329,0,-76.7251	0/1:112:55,57:55:1959:57:2040:-150.157,0,-142.869	0/1:36:19,17:19:684:17:607:-44.1237,0,-51.0532	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.145	0/1:92:39,53:39:1388:53:1900:-143.583,0,-97.5242	0/0:124:123,1:123:4400:1:36:0,-33.7294,-392.575	0/1:120:30,90:30:1080:90:3201:-252.189,0,-61.3897	0/1:86:25,61:25:891:61:2196:-172.017,0,-54.6202	0/1:77:36,41:36:1292:41:1468:-109.237,0,-93.4045	0/1:15:3,12:3:108:12:432:-34.7057,0,-5.55972	0/1:123:37,86:37:1320:86:3065:-239.049,0,-82.0753	0/0:83:83,0:83:2960:0:0:0,-24.9855,-266.634	0/1:207:70,137:70:2500:137:4841:-373.534,0,-162.94	0/1:152:68,84:68:2423:84:3012:-224.927,0,-172.569	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.961	0/0:81:81,0:81:2882:0:0:0,-24.3834,-259.616	0/0:157:154,1:154:5500:1:36:0,-43.4212,-491.519	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:70:37,33:37:1315:33:1176:-85.0751,0,-97.5789	0/1:90:40,49:40:1418:49:1748:-130.452,0,-100.765	0/1:83:40,43:40:1431:43:1548:-114.628,0,-104.101	0/1:159:77,82:77:2751:82:2952:-218.049,0,-199.968	0/1:56:25,31:25:900:31:1112:-83.5337,0,-64.4633	0/0:37:37,0:37:1311:0:0:0,-11.1381,-118.291	0/0:109:109,0:109:3903:0:0:0,-32.8123,-351.463
chr11	27851883	.	G	T	34079.9	PASS	AB=0.48966;ABP=7.18665;AC=49;AF=0.263441;AN=186;AO=2212;CIGAR=1X;DP=9740;DPB=9740;DPRA=0.96728;EPP=4780.28;EPPR=16295.6;GTI=4;LEN=1;MEANALT=1.05769;MQM=40.2048;MQMR=59.7445;NS=93;NUMALT=1;ODDS=0.263487;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79283;QR=268627;RO=7523;RPL=0;RPP=4806.31;RPPR=16339;RPR=2212;RUN=1;SAF=2209;SAP=4780.28;SAR=3;SRF=7518;SRP=16295.6;SRR=5;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:172:172,0:172:6157:0:0:0,-51.7772,-554.199	0/1:73:37,36:37:1298:36:1292:-86.3236,0,-95.1329	0/1:219:99,120:99:3541:120:4304:-309.583,0,-252.967	0/1:26:19,7:19:684:7:252:-14.1398,0,-54.0635	0/1:61:26,35:26:928:35:1256:-88.0093,0,-65.4673	0/0:128:128,0:128:4513:0:0:0,-38.5318,-406.284	0/0:167:166,0:166:5910:0:0:0,-49.971,-531.483	0/1:122:60,61:60:2129:61:2164:-146.284,0,-155.125	0/0:214:214,0:214:7684:0:0:0,-64.4204,-691.538	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.422	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.7	0/1:58:27,31:27:972:31:1101:-74.4563,0,-70.3218	0/0:81:81,0:81:2867:0:0:0,-24.3834,-258.232	0/1:69:38,31:38:1364:31:1099:-75.0689,0,-102.285	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.973	0/1:104:64,40:64:2304:40:1440:-89.7196,0,-176.297	0/1:63:31,32:31:1116:32:1152:-78.809,0,-81.7786	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.169	0/1:153:74,79:74:2641:79:2844:-202.012,0,-191.743	0/0:247:245,1:245:8691:1:36:0,-70.9513,-778.429	0/1:32:14,18:14:504:18:644:-47.6774,0,-36.0651	0/1:79:48,31:48:1728:31:1108:-72.6734,0,-132.022	0/0:166:166,0:166:5948:0:0:0,-49.971,-535.39	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:415:214,201:214:7585:201:7228:-511.536,0,-557.696	0/0:168:168,0:168:6005:0:0:0,-50.573,-540.534	0/1:48:18,30:18:648:30:1072:-77.6687,0,-43.2564	0/0:215:215,0:215:7690:0:0:0,-64.7214,-692.121	0/1:229:137,91:137:4889:91:3233:-206.364,0,-371.316	0/0:175:174,1:174:6210:1:36:0,-49.1775,-555.372	0/1:14:3,11:3:108:11:392:-29.0379,0,-5.86075	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3629	1/1:2:0,2:0:0:2:72:-6.43644,-0.60206,0	1/1:2:0,2:0:0:2:72:-6.18568,-0.60206,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:243:243,0:243:8687:0:0:0,-73.1503,-781.813	0/1:152:82,70:82:2948:70:2512:-170.216,0,-219.604	0/1:85:43,42:43:1529:42:1512:-101.848,0,-112.305	.:.:.:.:.:.:.:.	0/1:143:79,64:79:2817:64:2304:-155.268,0,-210.714	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4887	0/0:85:84,1:84:2948:1:36:0,-21.9944,-261.944	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.098	0/0:82:82,0:82:2924:0:0:0,-24.6845,-263.35	0/0:140:140,0:140:5001:0:0:0,-42.1442,-450.233	0/1:80:50,30:50:1785:30:1076:-65.8867,0,-136.835	0/0:177:176,0:176:6312:0:0:0,-52.9813,-567.795	0/0:138:137,1:137:4894:1:36:0,-37.9465,-436.997	0/1:142:83,59:83:2980:59:2120:-141.681,0,-225.409	0/0:218:218,0:218:7813:0:0:0,-65.6245,-703.191	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3112	0/0:89:89,0:89:3174:0:0:0,-26.7917,-285.881	0/0:146:146,0:146:5210:0:0:0,-43.9504,-469.035	0/1:23:12,11:12:428:11:396:-26.8237,0,-31.9351	0/0:118:118,0:118:4218:0:0:0,-35.5215,-379.766	0/1:36:12,24:12:432:24:860:-63.2221,0,-28.3841	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:33:33,0:33:1142:0:0:0,-9.93399,-103.071	0/1:86:54,32:54:1932:32:1148:-72.8218,0,-148.243	0/0:120:120,0:120:4262:0:0:0,-36.1236,-383.741	0/1:2:1,1:1:36:1:36:-2.90064,0,-2.99621	0/1:232:123,109:123:4396:109:3908:-274.941,0,-325.909	0/0:220:218,2:218:7779:2:72:0,-59.5715,-693.477	0/1:140:63,77:63:2264:77:2768:-196.207,0,-161.849	0/1:49:27,22:27:972:22:777:-53.5397,0,-73.0451	0/0:167:167,0:167:5973:0:0:0,-50.272,-537.176	0/0:116:116,0:116:4122:0:0:0,-34.9195,-371.153	0/1:17:5,12:5:180:12:432:-32.5364,0,-11.4346	0/1:112:57,55:57:2044:55:1971:-132.434,0,-150.492	0/1:113:59,54:59:2124:54:1944:-137.07,0,-157.407	0/1:19:6,13:6:216:13:464:-35.3,0,-14.0709	0/0:109:109,0:109:3882:0:0:0,-32.8123,-349.47	0/1:108:59,49:59:2093:49:1756:-115.799,0,-156.126	0/0:235:235,0:235:8405:0:0:0,-70.742,-756.295	0/1:135:82,53:82:2907:53:1881:-123.398,0,-221.22	0/1:77:40,37:40:1436:37:1324:-88.3574,0,-106.358	0/1:150:47,103:47:1684:103:3700:-267.064,0,-106.66	0/1:13:10,3:10:360:3:108:-5.57189,0,-28.8286	0/1:113:54,59:54:1929:59:2120:-146.215,0,-139.864	0/0:77:77,0:77:2733:0:0:0,-23.1793,-246.196	0/1:204:102,102:102:3611:102:3656:-255.973,0,-263.783	0/1:142:69,73:69:2480:73:2624:-184.224,0,-180.702	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.301	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.48	0/0:148:148,0:148:5312:0:0:0,-44.5524,-478.022	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.205	0/1:91:50,41:50:1776:41:1468:-96.6053,0,-132.721	0/1:70:37,33:37:1302:33:1165:-77.1072,0,-96.3889	0/1:19:7,12:7:252:12:432:-31.9344,0,-17.3001	0/1:73:32,41:32:1144:41:1476:-104.328,0,-81.2897	0/1:106:39,67:39:1400:67:2404:-177.104,0,-94.378	0/0:102:102,0:102:3668:0:0:0,-30.7051,-330.309	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.022
chr11	27851923	.	ATGC	TTGC,TTGT	206007	PASS	AB=0.502434,0.492593;ABP=3.24282,5.16545;AC=137,48;AF=0.736559,0.258065;AN=186;AO=7443,2239;CIGAR=1X3M,1X2M1X;DP=9733;DPB=9734.5;DPRA=53.4505,1.07316;EPP=16130.6,4830.26;EPPR=13.8677;GTI=4;LEN=1,4;MEANALT=2.04396,2.43636;MQM=59.7647,40.1581;MQMR=60;NS=93;NUMALT=2;ODDS=1.47935;PAIRED=0,0;PAIREDR=0;PAO=3,3;PQA=72,72;PQR=0;PRO=0;QA=266004,78935;QR=155;RO=5;RPL=7443,2239;RPP=16165.3,4864.94;RPPR=13.8677;RPR=0,0;RUN=1,1;SAF=7439,2235;SAP=16130.6,4830.26;SAR=4,4;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26,0:0:0:26,0:921,0:-83.2052,-7.82678,0,-83.2052,-7.82678,-83.2052	1/1:173:0,173,0:0:0:173,0:6144,0:-552.976,-52.0782,0,-552.976,-52.0782,-552.976	1/2:70:0,34,36:0:0:34,36:1194,1267:-193.33,-96.1455,-85.9105,-97.525,0,-86.688	1/2:218:0,96,122:0:0:96,122:3448,4281:-618.881,-337.603,-308.705,-281.628,0,-244.903	1/2:27:0,19,8:0:0:19,8:680,279:-77.4705,-22.0022,-16.2826,-55.8096,0,-53.4014	1/2:62:0,25,36:0:0:25,36:900,1285:-171.092,-97.6466,-90.1208,-73.4363,0,-62.5992	1/1:129:0,128,0:0:0:128,0:4571,0:-411.148,-38.5318,0,-411.148,-38.5318,-411.148	1/1:168:0,167,1:0:0:167,1:5948,36:-534.912,-50.272,0,-531.983,-46.9838,-531.682	1/2:121:0,58,62:0:0:58,62:2080,2142:-333.064,-163.4,-145.94,-169.726,0,-151.062	1/1:211:0,208,1:0:0:208,1:7421,35:-667.581,-62.6142,0,-664.735,-59.7451,-664.434	1/1:62:0,61,0:0:0:61,0:2180,0:-196.098,-18.3628,0,-196.098,-18.3628,-196.098	1/1:59:0,58,0:0:0:58,0:2084,0:-187.591,-17.4597,0,-187.591,-17.4597,-187.591	1/2:60:0,29,30:0:0:29,30:1039,1062:-164.245,-79.5041,-70.7743,-84.7818,0,-75.7509	1/1:81:0,79,0:0:0:79,0:2805,0:-252.338,-23.7814,0,-252.338,-23.7814,-252.338	1/2:69:0,37,31:0:0:37,31:1311,1088:-192.176,-85.3674,-74.2293,-106.901,0,-97.5689	1/1:56:0,56,0:0:0:56,0:1986,0:-179.001,-16.8577,0,-179.001,-16.8577,-179.001	1/2:105:0,65,40:0:0:65,40:2304,1397:-293.854,-106.153,-86.586,-188.039,0,-175.997	1/2:64:0,31,33:0:0:31,33:1108,1174:-180.316,-89.9714,-80.6395,-90.6909,0,-80.7569	1/1:47:0,47,0:0:0:47,0:1686,0:-151.973,-14.1484,0,-151.973,-14.1484,-151.973	1/2:151:0,71,80:0:0:71,80:2521,2862:-431.326,-225.914,-204.541,-205.763,0,-181.681	1/1:247:0,246,1:0:0:246,1:8816,36:-792.549,-74.0534,0,-789.617,-70.7612,-789.316	1/2:32:0,14,17:0:0:14,17:504,600:-89.1338,-48.0044,-43.7899,-41.1378,0,-36.0203	1/2:80:0,48,32:0:0:48,32:1712,1122:-228.115,-88.5479,-74.0985,-139.914,0,-130.281	1/1:166:0,165,0:0:0:165,0:5910,0:-531.693,-49.67,0,-531.693,-49.67,-531.693	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/2:414:0,211,201:0:0:211,201:7556,7095:-1181.47,-565.353,-501.836,-616.18,0,-555.672	1/1:167:0,166,0:0:0:166,0:5956,0:-535.877,-49.971,0,-535.877,-49.971,-535.877	1/2:49:0,18,30:0:0:18,30:648,1072:-135.741,-82.8637,-77.4451,-52.9919,0,-43.961	1/1:213:0,213,0:0:0:213,0:7611,0:-685.016,-64.1194,0,-685.016,-64.1194,-685.016	1/2:229:0,136,93:0:0:136,93:4869,3252:-646.213,-249.144,-208.204,-397.41,0,-369.414	1/1:173:0,171,1:0:0:171,1:6116,36:-550.139,-51.4761,0,-547.288,-48.6294,-546.987	1/2:14:0,3,11:0:0:3,11:108,383:-38.065,-29.2454,-28.3424,-9.17208,0,-5.86075	1/1:10:0,10,0:0:0:10,0:351,0:-31.881,-3.0103,0,-31.881,-3.0103,-31.881	0/2:3:1,0,2:1:29:0,2:0,72:-5.53335,-5.83438,-8.12677,0,-2.59863,-1.99657	2/2:2:0,0,2:0:0:0,2:0,72:-6.18568,-6.18568,-6.18568,-0.60206,-0.60206,0	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:241:0,241,0:0:0:241,0:8612,0:-775.072,-72.5482,0,-775.072,-72.5482,-775.072	1/2:151:0,81,67:0:0:81,67:2899,2382:-421.181,-184.964,-160.581,-236.25,0,-216.081	1/2:86:0,42,43:0:0:42,43:1500,1515:-237.335,-115.027,-102.384,-122.37,0,-109.425	.:.:.:.:.:.:.:.	1/2:145:0,79,66:0:0:79,66:2844,2338:-413.928,-181.881,-158.099,-232.396,0,-212.528	1/1:23:0,23,0:0:0:23,0:828,0:-74.8437,-6.92369,0,-74.8437,-6.92369,-74.8437	1/1:83:1,81,1:1:36:81,1:2895,36:-257.178,-21.4458,0,-254.546,-21.4509,-257.182	1/1:90:0,90,0:0:0:90,0:3201,0:-288.31,-27.0927,0,-288.31,-27.0927,-288.31	1/1:80:0,78,0:0:0:78,0:2778,0:-249.852,-23.4803,0,-249.852,-23.4803,-249.852	1/1:138:0,138,0:0:0:138,0:4943,0:-445.015,-41.5421,0,-445.015,-41.5421,-445.015	1/2:79:0,49,30:0:0:49,30:1760,1044:-222.348,-78.7655,-64.0151,-143.92,0,-134.889	1/1:181:0,179,1:0:0:179,1:6399,25:-575.658,-53.8844,0,-573.71,-51.9905,-573.409	1/1:136:0,135,0:0:0:135,0:4824,0:-433.941,-40.6391,0,-433.941,-40.6391,-433.941	1/2:144:1,84,59:1:29:84,59:2989,2088:-404.266,-161.241,-138.262,-241.075,0,-225.622	1/1:215:0,214,0:0:0:214,0:7663,0:-689.399,-64.4204,0,-689.399,-64.4204,-689.399	1/1:4:0,4,0:0:0:4,0:144,0:-13.3112,-1.20412,0,-13.3112,-1.20412,-13.3112	1/1:91:0,91,0:0:0:91,0:3262,0:-293.521,-27.3937,0,-293.521,-27.3937,-293.521	1/1:144:1,143,0:1:25:143,0:5103,0:-456.913,-40.8485,0,-457.214,-43.0473,-459.162	1/2:22:0,11,11:0:0:11,11:396,389:-62.3079,-29.9829,-26.6715,-32.6714,0,-29.3601	1/1:116:0,113,1:0:0:113,1:4059,36:-365.161,-34.0164,0,-362.228,-31.0653,-361.927	1/2:36:0,11,25:0:0:11,25:396,874:-100.607,-68.2883,-64.977,-32.6714,0,-25.1457	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chr11	27882646	.	C	T	115008	PASS	AB=0.518507;ABP=12.5749;AC=141;AF=0.766304;AN=184;AO=5426;CIGAR=1X;DP=6986;DPB=6986;DPRA=0;EPP=11785.4;EPPR=3383.99;GTI=0;LEN=1;MEANALT=1.03261;MQM=59.9733;MQMR=60;NS=92;NUMALT=1;ODDS=6.37191;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=193790;QR=55790;RO=1557;RPL=0;RPP=11785.4;RPPR=3383.99;RPR=5426;RUN=1;SAF=5426;SAP=11785.4;SAR=0;SRF=1557;SRP=3383.99;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:720:-64.188,-6.0206,0	1/1:59:1,58:1:36:58:2065:-182.521,-14.1625,0	0/1:79:35,44:35:1256:44:1572:-117.99,0,-89.5639	0/1:208:96,112:96:3444:112:3986:-296.314,0,-247.558	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:28:12,16:12:428:16:557:-42.0267,0,-30.43	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:89:0,89:0:0:89:3179:-286.335,-26.7917,0	0/1:78:36,42:36:1288:42:1489:-110.822,0,-92.7432	1/1:118:0,117:0:0:117:4200:-377.82,-35.2205,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:88:0,88:0:0:88:3150:-283.724,-26.4906,0	0/1:69:41,28:41:1459:28:1008:-70.2653,0,-110.834	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:59:34,25:34:1224:25:892:-62.8389,0,-92.7063	1/1:43:0,43:0:0:43:1533:-138.262,-12.9443,0	0/1:26:9,17:9:320:17:604:-46.8638,0,-21.3156	0/1:31:14,16:14:495:16:572:-42.4228,0,-35.4927	1/1:27:0,27:0:0:27:970:-87.6177,-8.12781,0	0/1:86:38,48:38:1364:48:1713:-128.565,0,-97.1721	1/1:157:0,157:0:0:157:5636:-507.359,-47.2617,0	0/1:47:30,17:30:1076:17:608:-40.9036,0,-83.0044	0/1:72:27,45:27:964:45:1601:-122.704,0,-65.4027	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:28:1,27:1:36:27:968:-83.8391,-4.83057,0	0/1:217:98,119:98:3508:119:4254:-317.714,0,-250.607	1/1:173:0,173:0:0:173:6210:-558.994,-52.0782,0	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.2574	1/1:272:0,272:0:0:272:9683:-871.423,-81.8802,0	0/1:120:55,65:55:1964:65:2327:-173.566,0,-140.912	1/1:83:0,83:0:0:83:2967:-267.263,-24.9855,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:165:0,165:0:0:165:5885:-529.761,-49.67,0	0/1:74:38,36:38:1356:36:1276:-92.8649,0,-100.064	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2753	.:.:.:.:.:.:.:.	0/1:247:116,130:116:4164:130:4637:-343.068,0,-300.528	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:77:0,77:0:0:77:2732:-246.118,-23.1793,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:91:0,91:0:0:91:3249:-292.63,-27.3937,0	0/1:79:49,30:49:1764:30:1072:-73.0111,0,-135.262	1/1:144:0,144:0:0:144:5119:-460.851,-43.3483,0	1/1:111:0,111:0:0:111:3946:-355.142,-33.4143,0	0/1:70:36,34:36:1292:34:1224:-89.3949,0,-95.5117	1/1:41:1,40:1:36:40:1409:-123.506,-8.74396,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	1/1:164:0,164:0:0:164:5864:-527.872,-49.3689,0	0/1:34:15,19:15:536:19:661:-49.5766,0,-38.3398	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:9:0,9:0:0:9:324:-29.3987,-2.70927,0	0/1:33:23,10:23:828:10:341:-21.0838,0,-64.9101	1/1:92:0,92:0:0:92:3280:-295.42,-27.6948,0	.:.:.:.:.:.:.:.	0/1:195:94,101:94:3368:101:3608:-266.226,0,-244.635	1/1:172:1,171:1:36:171:6089:-544.515,-48.1789,0	0/1:62:23,39:23:820:39:1400:-107.634,0,-55.4587	0/1:64:32,32:32:1144:32:1142:-83.8232,0,-84.0036	1/1:162:0,162:0:0:162:5775:-519.865,-48.7669,0	1/1:130:2,128:2:72:128:4571:-404.719,-32.2972,0	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	0/1:39:19,20:19:680:20:720:-53.3886,0,-49.789	0/1:40:20,20:20:720:20:716:-52.7265,0,-53.0876	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:136:0,136:0:0:136:4832:-435.033,-40.9401,0	0/1:94:43,51:43:1532:51:1828:-136.504,0,-109.876	1/1:72:1,71:1:36:71:2556:-226.691,-18.0759,0	0/1:215:103,112:103:3700:112:4016:-296.907,0,-268.48	0/1:33:7,26:7:252:26:920:-73.1825,0,-13.095	0/1:102:52,50:52:1864:50:1772:-129.055,0,-137.334	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:115:48,67:48:1720:67:2393:-181.007,0,-120.467	1/1:55:0,55:0:0:55:1974:-177.932,-16.5567,0	0/1:160:67,93:67:2408:93:3334:-252.113,0,-168.811	0/1:62:30,32:30:1071:32:1135:-83.7942,0,-78.0378	1/1:70:0,70:0:0:70:2493:-224.622,-21.0721,0	1/1:47:0,47:0:0:47:1683:-151.756,-14.1484,0	1/1:131:3,128:3:108:128:4584:-402.645,-29.3598,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:70:39,31:39:1400:31:1107:-78.8681,0,-105.227	0/1:54:31,23:31:1112:23:828:-58.5885,0,-84.1357	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:54:25,29:25:900:29:1027:-76.486,0,-65.0654	0/1:60:36,24:36:1277:24:864:-60.0208,0,-97.1693	1/1:136:0,136:0:0:136:4843:-436.026,-40.9401,0	1/1:92:1,91:1:36:91:3253:-289.391,-24.0965,0
chr11	27903741	.	T	C	121079	PASS	AB=0.50342;ABP=4.09451;AC=48;AF=0.255319;AN=188;AO=5392;CIGAR=1X;DP=21246;DPB=21246;DPRA=1.28651;EPP=11711.6;EPPR=34425.2;GTI=0;LEN=1;MEANALT=1.0339;MQM=54.043;MQMR=59.902;NS=94;NUMALT=1;ODDS=13.0682;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190960;QR=566447;RO=15852;RPL=2341;RPP=206.022;RPPR=216.364;RPR=3051;RUN=1;SAF=2341;SAP=206.022;SAR=3051;SRF=7302;SRP=216.364;SRR=8550;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:85:85,0:85:3043:0:0:0,-25.5875,-274.099	0/0:294:294,0:294:10521:0:0:0,-88.5028,-946.657	0/1:329:167,162:167:5964:162:5739:-415.593,0,-437.799	0/1:526:241,285:241:8601:285:10123:-748.953,0,-615.503	0/1:149:70,79:70:2471:79:2824:-206.354,0,-177.786	0/1:88:52,36:52:1860:36:1288:-89.4761,0,-140.699	0/0:303:303,0:303:10817:0:0:0,-91.2121,-973.421	0/0:407:402,5:402:14360:5:176:0,-106.345,-1275.68	0/1:291:146,145:146:5185:145:5101:-370.433,0,-379.157	0/0:222:222,0:222:7940:0:0:0,-66.8287,-714.611	0/0:118:118,0:118:4206:0:0:0,-35.5215,-378.716	0/0:217:217,0:217:7774:0:0:0,-65.3235,-699.679	0/1:182:79,103:79:2828:103:3661:-274.414,0,-199.971	0/0:148:148,0:148:5275:0:0:0,-44.5524,-474.866	0/1:168:94,73:94:3380:73:2607:-183.822,0,-253.783	0/0:169:167,2:167:5968:2:68:0,-44.4164,-530.753	0/1:114:57,57:57:2031:57:2036:-148.778,0,-148.744	0/1:115:61,54:61:2183:54:1904:-136.085,0,-162.117	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.876	0/1:496:252,244:252:9034:244:8694:-625.72,0,-663.71	0/1:448:220,228:220:7842:228:8062:-587.977,0,-570.941	0/1:267:88,179:88:3156:179:6381:-491.033,0,-203.89	0/1:258:120,138:120:4287:138:4862:-358.722,0,-308.328	0/1:142:118,24:118:4208:24:834:-32.2746,0,-335.914	0/0:175:175,0:175:6255:0:0:0,-52.6802,-563.045	0/1:682:310,372:310:11073:372:13143:-971.789,0,-791.121	0/0:544:543,1:543:19421:1:36:0,-160.162,-1743.58	0/1:94:54,40:54:1921:40:1415:-99.0745,0,-144.868	0/0:622:622,0:622:22221:0:0:0,-187.241,-1999.01	0/1:381:198,183:198:7100:183:6469:-466.056,0,-524.258	0/0:241:240,1:240:8555:1:36:0,-68.95,-766.34	0/1:30:17,13:17:608:13:468:-33.3645,0,-46.0211	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.074	0/1:9:4,5:4:140:5:180:-13.8261,0,-10.2353	0/1:23:9,14:9:324:14:504:-38.7662,0,-22.5822	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.9234	0/0:466:465,1:465:16666:1:36:0,-136.682,-1495.7	0/1:342:164,178:164:5851:178:6300:-460.976,0,-423.636	0/1:126:59,67:59:2115:67:2370:-175.376,0,-152.685	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/1:319:138,181:138:4929:181:6425:-479.735,0,-347.731	0/0:87:87,0:87:3106:0:0:0,-26.1896,-279.766	0/0:381:380,1:380:13573:1:36:0,-111.106,-1217.65	0/0:200:200,0:200:7171:0:0:0,-60.206,-645.43	0/0:160:160,0:160:5687:0:0:0,-48.1648,-511.94	0/0:250:250,0:250:8928:0:0:0,-75.2575,-803.503	0/1:319:176,142:176:6279:142:5006:-351.769,0,-469.089	0/0:368:368,0:368:13149:0:0:0,-110.779,-1183.17	0/0:292:292,0:292:10436:0:0:0,-87.9008,-939.108	0/1:292:145,147:145:5187:147:5210:-379.455,0,-379.069	0/0:215:215,0:215:7688:0:0:0,-64.7214,-691.439	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/0:287:287,0:287:10276:0:0:0,-86.3956,-924.573	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/1:32:22,10:22:792:10:356:-22.7391,0,-61.9727	0/0:320:320,0:320:11401:0:0:0,-96.3296,-1025.38	0/0:107:107,0:107:3798:0:0:0,-32.2102,-341.999	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:197:109,88:109:3867:88:3156:-222.963,0,-288.689	0/0:251:251,0:251:8976:0:0:0,-75.5585,-807.816	0/1:17:9,8:9:320:8:288:-21.0758,0,-24.0248	0/1:539:254,285:254:9087:285:10134:-744.814,0,-655.532	0/0:420:417,3:417:14905:3:108:0,-116.357,-1330.77	0/1:176:81,95:81:2867:95:3359:-248.57,0,-205.272	0/1:226:102,124:102:3652:124:4359:-321.912,0,-260.837	0/0:375:374,1:374:13382:1:36:0,-109.288,-1200.32	0/0:227:226,1:226:8100:1:36:0,-64.7355,-725.417	0/1:74:34,40:34:1216:40:1402:-104.13,0,-87.4703	0/1:146:89,57:89:3187:57:1994:-134.128,0,-243.099	0/1:160:81,79:81:2904:79:2747:-198.067,0,-213.431	0/1:44:24,20:24:864:20:716:-50.9828,0,-64.8372	0/0:285:285,0:285:10163:0:0:0,-85.7935,-914.603	0/1:193:100,93:100:3575:93:3311:-238.51,0,-263.858	0/0:288:288,0:288:10262:0:0:0,-86.6966,-922.085	0/1:393:171,222:171:6092:222:7835:-583.836,0,-430.081	0/1:234:133,101:133:4714:101:3580:-251.174,0,-353.969	0/1:202:93,109:93:3328:109:3871:-287.11,0,-238.93	0/1:40:24,16:24:852:16:555:-38.1791,0,-64.9592	0/1:280:144,136:144:5147:136:4831:-348.606,0,-379.055	0/0:303:303,0:303:10833:0:0:0,-91.2121,-974.804	0/1:487:241,246:241:8620:246:8673:-630.139,0,-629.176	0/1:207:122,85:122:4384:85:2987:-204.775,0,-332.405	0/0:179:179,0:179:6415:0:0:0,-53.8844,-577.231	0/0:170:170,0:170:6088:0:0:0,-51.1751,-548.014	0/0:371:370,1:370:13221:1:36:0,-108.084,-1186.06	0/0:85:85,0:85:3006:0:0:0,-25.5875,-270.759	0/1:179:95,84:95:3411:84:2995:-215.427,0,-253.289	0/1:196:106,90:106:3787:90:3165:-224.048,0,-282.025	0/1:89:52,37:52:1868:37:1304:-90.8156,0,-141.608	0/1:180:99,81:99:3523:81:2889:-205.595,0,-263.086	0/1:192:74,118:74:2664:118:4171:-316.271,0,-182.207	0/0:345:345,0:345:12347:0:0:0,-103.855,-1111.06	0/0:267:265,2:265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chr11	27903757	.	C	T	52353.5	PASS	AB=0.515251;ABP=15.264;AC=50;AF=0.265957;AN=188;AO=3134;CIGAR=1X;DP=11554;DPB=11554;DPRA=1.13297;EPP=6808.4;EPPR=18247.7;GTI=1;LEN=1;MEANALT=1.04;MQM=49.4429;MQMR=59.8545;NS=94;NUMALT=1;ODDS=0.914624;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111750;QR=297622;RO=8414;RPL=0;RPP=6808.4;RPPR=18247.7;RPR=3134;RUN=1;SAF=0;SAP=6808.4;SAR=3134;SRF=0;SRP=18273.8;SRR=8414;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:204:204,0:204:7269:0:0:0,-61.4101,-654.259	0/1:157:82,75:82:2890:75:2687:-192.808,0,-213.046	0/1:296:124,172:124:4370:172:6135:-459.085,0,-304.128	0/1:97:44,53:44:1559:53:1892:-139.626,0,-111.401	0/1:78:48,30:48:1704:30:1080:-73.771,0,-129.672	0/0:164:164,0:164:5795:0:0:0,-49.3689,-521.657	0/0:200:199,1:199:7060:1:36:0,-56.6168,-631.78	0/1:130:50,80:50:1762:80:2830:-214.895,0,-119.728	0/0:121:118,0:118:4159:0:0:0,-35.5215,-374.08	0/0:52:52,0:52:1827:0:0:0,-15.6536,-164.694	0/0:78:78,0:78:2753:0:0:0,-23.4803,-248.003	0/1:80:32,48:32:1126:48:1707:-129.405,0,-77.5636	0/0:84:84,0:84:2978:0:0:0,-25.2865,-268.241	0/1:84:48,36:48:1679:36:1281:-89.8263,0,-126.107	0/0:81:81,0:81:2825:0:0:0,-24.3834,-254.488	0/1:79:43,36:43:1521:36:1284:-91.5705,0,-113.394	0/1:58:31,27:31:1104:27:951:-67.6278,0,-82.2109	0/0:26:26,0:26:920:0:0:0,-7.82678,-83.1089	0/1:316:159,157:159:5617:157:5530:-397.536,0,-410.503	0/1:173:80,93:80:2828:93:3314:-243.685,0,-202.453	0/1:156:51,105:51:1807:105:3772:-288.592,0,-115.821	0/1:113:50,63:50:1775:63:2249:-165.814,0,-125.988	0/1:127:104,23:104:3664:23:828:-36.2207,0,-291.5	0/0:83:83,0:83:2956:0:0:0,-24.9855,-266.275	0/1:437:179,258:179:6354:258:9213:-689.816,0,-440.389	0/0:224:224,0:224:7896:0:0:0,-67.4307,-710.664	0/1:50:29,21:29:1036:21:752:-52.4902,0,-78.5024	0/0:424:424,0:424:15051:0:0:0,-127.637,-1354.04	0/1:235:130,105:130:4602:105:3742:-263.722,0,-343.607	0/0:103:103,0:103:3637:0:0:0,-31.0061,-327.537	0/1:21:13,8:13:464:8:288:-19.5421,0,-35.7759	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/1:5:4,1:4:140:1:36:-2.08408,0,-11.4253	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:209:209,0:209:7331:0:0:0,-62.9153,-659.573	0/1:257:112,145:112:3951:145:5164:-383.981,0,-278.416	0/1:58:23,35:23:820:35:1252:-95.1457,0,-56.6594	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:195:79,116:79:2811:116:4141:-312.02,0,-194.522	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/0:231:229,1:229:8130:1:36:0,-66.0091,-728.037	0/0:127:127,0:127:4462:0:0:0,-38.2308,-401.747	0/0:81:81,0:81:2795:0:0:0,-24.3834,-251.78	0/0:92:92,0:92:3248:0:0:0,-27.6948,-292.535	0/1:218:109,109:109:3874:109:3882:-278.826,0,-282.491	0/0:236:236,0:236:8358:0:0:0,-71.0431,-752.202	0/0:188:188,0:188:6705:0:0:0,-56.5936,-603.514	0/1:202:99,103:99:3502:103:3677:-267.38,0,-254.585	0/0:127:127,0:127:4508:0:0:0,-38.2308,-405.883	0/0:6:6,0:6:208:0:0:0,-1.80618,-19.0591	0/0:144:144,0:144:5077:0:0:0,-43.3483,-456.889	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:9:8,1:8:280:1:36:-0.879959,0,-22.83	0/0:177:177,0:177:6280:0:0:0,-53.2823,-565.271	0/0:49:48,0:48:1703:0:0:0,-14.4494,-153.281	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8917	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/1:85:38,47:38:1332:47:1692:-124.249,0,-94.5895	0/0:102:102,0:102:3594:0:0:0,-30.7051,-323.668	1/1:5:0,5:0:0:5:180:-16.482,-1.50515,0	0/1:372:190,182:190:6751:182:6528:-468.612,0,-495.639	0/0:280:280,0:280:9904:0:0:0,-84.2884,-890.978	0/1:104:41,63:41:1443:63:2235:-169.124,0,-98.8473	0/1:139:62,77:62:2209:77:2742:-202.568,0,-157.23	0/0:192:192,0:192:6781:0:0:0,-57.7978,-608.712	0/0:75:75,0:75:2664:0:0:0,-22.5772,-239.989	0/1:18:12,6:12:409:6:216:-14.3071,0,-31.7169	0/1:77:46,31:46:1637:31:1095:-74.6304,0,-124.437	0/1:108:60,48:60:2134:48:1724:-121.119,0,-159.816	0/1:28:10,18:10:351:18:642:-49.3302,0,-23.4978	0/0:89:89,0:89:3157:0:0:0,-26.7917,-284.355	0/1:94:49,45:49:1738:45:1594:-114.491,0,-128.376	0/0:153:153,0:153:5449:0:0:0,-46.0576,-489.956	0/1:240:108,132:108:3811:132:4689:-347.535,0,-270.942	0/1:105:46,59:46:1630:59:2114:-157.637,0,-115.379	0/1:124:61,63:61:2171:63:2268:-166.28,0,-158.328	0/1:22:14,8:14:496:8:288:-19.5787,0,-38.3516	0/1:169:83,86:83:2934:86:3058:-221.631,0,-213.384	0/0:211:211,0:211:7432:0:0:0,-63.5173,-668.831	0/1:302:147,154:147:5191:154:5493:-397.635,0,-376.365	0/1:128:76,52:76:2668:52:1829:-124.44,0,-201.818	0/0:79:79,0:79:2790:0:0:0,-23.7814,-251.328	0/0:94:94,0:94:3317:0:0:0,-28.2968,-298.734	0/0:184:184,0:184:6476:0:0:0,-55.3895,-582.924	0/0:61:61,0:61:2162:0:0:0,-18.3628,-194.846	0/1:74:49,25:49:1721:25:893:-57.8792,0,-132.893	0/1:85:41,44:41:1445:44:1574:-114.589,0,-104.756	0/1:24:18,6:18:644:6:216:-12.5009,0,-51.0659	0/1:53:27,26:27:956:26:909:-65.8805,0,-70.4011	0/1:83:30,53:30:1071:53:1904:-145.042,0,-71.708	0/0:213:213,0:213:7570:0:0:0,-64.1194,-681.338	0/0:120:120,0:120:4226:0:0:0,-36.1236,-380.521
chr11	28006350	.	GATCAAC	AATTAAT,AATCAAC	161530	PASS	AB=0.543644,0.452841;ABP=87.7359,101.933;AC=140,48;AF=0.744681,0.255319;AN=188;AO=8469,2324;CIGAR=1X2M1X2M1X,1X6M;DP=10827;DPB=10828.9;DPRA=58.1989,0.976901;EPP=18393.2,5049.51;EPPR=7.35324;GTI=2;LEN=7,1;MEANALT=1.83871,2.3;MQM=27.4475,59.9376;MQMR=60;NS=94;NUMALT=2;ODDS=3.926;PAIRED=0,0;PAIREDR=0;PAO=5,0;PQA=175,0;PQR=0;PRO=0;QA=300069,83218;QR=67;RO=2;RPL=0,0;RPP=18393.2,5049.51;RPPR=7.35324;RPR=8469,2324;RUN=1,1;SAF=8469,2324;SAP=18393.2,5049.51;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26,0:0:0:26,0:908,0:-60.5247,-7.82678,0,-60.5247,-7.82678,-60.5247	1/1:180:0,180,0:0:0:180,0:6375,0:-419.353,-54.1854,0,-419.353,-54.1854,-419.353	1/2:151:0,72,79:0:0:72,79:2546,2844:-375.905,-232.411,-210.737,-143.799,0,-120.018	1/2:254:0,149,102:0:0:149,102:5249,3660:-607.413,-298.609,-253.756,-308.836,0,-278.131	1/2:110:0,56,54:0:0:56,54:2003,1944:-267.473,-158.976,-142.118,-108.803,0,-92.5471	1/2:79:0,38,40:0:0:38,40:1355,1432:-193.644,-116.835,-105.396,-76.8156,0,-64.7744	1/1:153:0,151,0:0:0:151,0:5347,0:-360.253,-45.4555,0,-360.253,-45.4555,-360.253	1/1:220:0,219,0:0:0:219,0:7770,0:-507.143,-65.9256,0,-507.143,-65.9256,-507.143	1/2:138:0,73,65:0:0:73,65:2587,2325:-337.049,-189.714,-167.739,-147.645,0,-128.078	1/1:122:0,122,0:0:0:122,0:4329,0:-290.361,-36.7257,0,-290.361,-36.7257,-290.361	1/1:71:0,71,0:0:0:71,0:2520,0:-168.904,-21.3731,0,-168.904,-21.3731,-168.904	1/1:91:0,91,0:0:0:91,0:3237,0:-214.955,-27.3937,0,-214.955,-27.3937,-214.955	1/2:101:0,43,58:0:0:43,58:1524,2069:-255.403,-169.019,-156.075,-86.6835,0,-69.2237	1/1:62:0,62,0:0:0:62,0:2196,0:-141.841,-18.6639,0,-141.841,-18.6639,-141.841	1/2:90:0,42,46:0:0:42,46:1509,1652:-222.814,-134.757,-122.113,-88.0118,0,-74.1644	1/1:77:0,77,0:0:0:77,0:2729,0:-174.712,-23.1793,0,-174.712,-23.1793,-174.712	1/2:69:0,31,38:0:0:31,38:1094,1368:-174.684,-111.982,-102.65,-63.0064,0,-51.5672	1/2:109:0,54,55:0:0:54,55:1916,1972:-268.83,-161.198,-144.943,-107.938,0,-91.3809	1/1:54:0,54,0:0:0:54,0:1918,0:-125.222,-16.2556,0,-125.222,-16.2556,-125.222	1/2:275:0,154,121:0:0:154,121:5467,4352:-674.023,-355.428,-309.069,-318.912,0,-282.488	1/2:206:0,116,89:0:0:116,89:4085,3192:-484.264,-260.341,-225.422,-223.874,0,-197.083	1/2:97:0,30,67:0:0:30,67:1058,2381:-260.796,-194.377,-185.347,-66.7215,0,-46.5525	1/2:76:0,47,29:0:0:47,29:1639,1044:-184.166,-85.5449,-71.3965,-98.9451,0,-90.2152	1/1:146:0,145,1:0:0:145,1:5155,36:-328.135,-43.6494,0,-325.197,-40.3521,-324.896	1/1:60:0,60,0:0:0:60,0:2117,0:-137.307,-18.0618,0,-137.307,-18.0618,-137.307	1/2:405:0,212,191:0:0:212,191:7461,6826:-1027.32,-556.602,-492.783,-470.736,0,-413.239	1/1:271:0,270,0:0:0:270,0:9551,0:-608.047,-81.2781,0,-608.047,-81.2781,-608.047	1/2:43:2,19,22:2:67:19,22:679,792:-94.9935,-59.222,-58.9265,-30.9115,0,-29.7234	1/1:347:0,346,0:0:0:346,0:12246,0:-872.441,-104.156,0,-872.441,-104.156,-872.441	1/2:139:0,83,56:0:0:83,56:2909,2008:-325.93,-164.118,-139.133,-162.126,0,-145.269	1/1:155:0,155,0:0:0:155,0:5473,0:-366.731,-46.6597,0,-366.731,-46.6597,-366.731	1/2:8:0,1,6:0:0:1,6:30,197:-17.851,-16.0183,-15.7172,-1.85592,0,-0.0497418	1/1:19:0,19,0:0:0:19,0:674,0:-43.4496,-5.71957,0,-43.4496,-5.71957,-43.4496	2/2:2:0,0,2:0:0:0,2:0,57:-5.41331,-5.41331,-5.41331,-0.60206,-0.60206,0	1/2:7:0,2,5:0:0:2,5:72,176:-18.6561,-14.6799,-14.0778,-4.25948,0,-2.75433	1/1:7:0,7,0:0:0:7,0:250,0:-16.3573,-2.10721,0,-16.3573,-2.10721,-16.3573	1/1:272:0,270,0:0:0:270,0:9603,0:-686.434,-81.2781,0,-686.434,-81.2781,-686.434	1/2:139:0,70,69:0:0:70,69:2467,2472:-336.627,-201.963,-180.891,-134.967,0,-114.196	1/2:80:0,33,47:0:0:33,47:1175,1684:-205.352,-137.699,-127.765,-67.9551,0,-53.8067	1/1:3:0,3,0:0:0:3,0:104,0:-6.94093,-0.90309,0,-6.94093,-0.90309,-6.94093	1/2:168:0,119,48:0:0:119,48:4225,1724:-372.695,-140.721,-104.898,-232.027,0,-217.578	1/1:55:0,55,0:0:0:55,0:1920,0:-121.921,-16.5567,0,-121.921,-16.5567,-121.921	1/1:101:0,101,0:0:0:101,0:3588,0:-227.119,-30.404,0,-227.119,-30.404,-227.119	1/1:98:0,98,0:0:0:98,0:3469,0:-233.069,-29.5009,0,-233.069,-29.5009,-233.069	1/1:88:0,88,0:0:0:88,0:3086,0:-211.417,-26.4906,0,-211.417,-26.4906,-211.417	1/1:105:0,105,0:0:0:105,0:3728,0:-265.505,-31.6082,0,-265.505,-31.6082,-265.505	1/2:121:0,82,39:0:0:82,39:2909,1400:-283.051,-114.557,-89.8721,-168.822,0,-157.082	1/1:192:0,191,0:0:0:191,0:6763,0:-455.381,-57.4967,0,-455.381,-57.4967,-455.381	1/1:152:0,152,0:0:0:152,0:5389,0:-362.535,-45.7566,0,-362.535,-45.7566,-362.535	1/2:164:0,89,75:0:0:89,75:3164,2696:-405.489,-220.296,-193.504,-185.51,0,-162.932	1/1:153:0,153,0:0:0:153,0:5425,0:-385.619,-46.0576,0,-385.619,-46.0576,-385.619	1/1:5:0,5,0:0:0:5,0:176,0:-12.1213,-1.50515,0,-12.1213,-1.50515,-12.1213	1/1:156:0,156,0:0:0:156,0:5526,0:-361.208,-46.9607,0,-361.208,-46.9607,-361.208	1/1:68:0,68,0:0:0:68,0:2397,0:-170.482,-20.47,0,-170.482,-20.47,-170.482	1/2:7:0,5,2:0:0:5,2:170,72:-16.207,-6.23466,-4.72951,-10.3027,0,-9.70067	1/1:157:0,156,0:0:0:156,0:5513,0:-348.295,-46.9607,0,-348.295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chr11	28035292	.	CCCTT	ACCTT	26754.9	PASS	AB=0.466135;ABP=40.5136;AC=48;AF=0.255319;AN=188;AO=1763;CIGAR=1X4M;DP=7864;DPB=7863.6;DPRA=1.00521;EPP=3805.3;EPPR=12603.4;GTI=2;LEN=1;MEANALT=1.43396;MQM=45.9977;MQMR=59.5439;NS=94;NUMALT=1;ODDS=0.371589;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61473;QR=212114;RO=6056;RPL=3;RPP=3805.3;RPPR=12603.4;RPR=1760;RUN=1;SAF=1763;SAP=3831.32;SAR=0;SRF=6056;SRP=13153.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1708:0:0:0,-15.0515,-153.278	0/0:58:58,0:58:2044:0:0:0,-17.4597,-184.05	0/1:138:74,62:74:2569:62:2154:-148.6,0,-190.206	0/1:206:102,103:102:3613:103:3622:-261.431,0,-263.264	0/1:56:33,23:33:1142:23:805:-55.0678,0,-86.2125	0/1:40:23,17:23:812:17:596:-40.8259,0,-61.334	0/0:73:73,0:73:2569:0:0:0,-21.9752,-231.461	0/0:169:165,0:165:5823:0:0:0,-49.6699,-523.814	0/1:66:36,30:36:1247:30:1030:-70.9147,0,-92.6449	0/0:45:45,0:45:1583:0:0:0,-13.5463,-142.73	0/0:46:46,0:46:1604:0:0:0,-13.8474,-144.614	0/0:86:85,0:85:3010:0:0:0,-25.5875,-270.727	0/1:81:37,44:37:1303:44:1556:-112.423,0,-93.1621	0/0:51:51,0:51:1771:0:0:0,-15.3525,-159.664	0/1:54:28,26:28:990:26:928:-66.9142,0,-73.1581	0/0:47:46,0:46:1584:0:0:0,-13.8474,-142.535	0/1:18:5,13:5:177:13:422:-32.1626,0,-10.8559	0/1:28:15,13:15:536:13:456:-32.1546,0,-40.1438	0/0:41:41,0:41:1418:0:0:0,-12.3422,-127.91	0/1:107:54,53:54:1913:53:1848:-133.24,0,-140.209	0/1:115:63,50:63:2201:50:1755:-121.675,0,-163.998	0/1:135:47,87:47:1647:87:2996:-227.47,0,-107.811	0/1:82:38,44:38:1310:44:1539:-112.828,0,-93.2781	0/1:49:44,5:44:1526:5:180:-1.61917,0,-122.88	0/0:63:62,0:62:2128:0:0:0,-18.6639,-191.429	0/1:221:124,94:124:4370:94:3304:-230.203,0,-327.307	0/0:232:232,0:232:8123:0:0:0,-69.839,-730.63	0/1:37:15,21:15:522:21:740:-54.9216,0,-36.1101	0/0:225:225,0:225:7864:0:0:0,-67.7317,-707.8	0/1:125:69,56:69:2398:56:1955:-136.475,0,-178.447	0/0:123:123,0:123:4277:0:0:0,-37.0267,-385.076	0/1:15:9,6:9:315:6:212:-14.6782,0,-24.1725	0/0:15:15,0:15:534:0:0:0,-4.51545,-48.3944	0/1:13:8,5:8:274:5:180:-12.2832,0,-21.0733	0/1:27:22,5:22:781:5:172:-7.41713,0,-62.4836	0/0:31:30,0:30:1056:0:0:0,-9.0309,-95.0143	0/0:191:191,0:191:6670:0:0:0,-57.4967,-600.244	0/1:98:42,54:42:1466:54:1844:-134.398,0,-102.973	0/1:37:24,13:24:850:13:437:-27.4371,0,-65.6796	0/0:4:4,0:4:143:0:0:0,-1.20412,-13.2214	0/1:194:105,88:105:3654:88:3052:-213.599,0,-270.748	0/0:42:42,0:42:1488:0:0:0,-12.6433,-134.175	0/0:102:102,0:102:3593:0:0:0,-30.7051,-323.527	0/0:46:46,0:46:1599:0:0:0,-13.8474,-144.197	0/0:67:67,0:67:2342:0:0:0,-20.169,-211.03	0/0:142:142,0:142:4944:0:0:0,-42.7463,-444.913	0/1:117:54,62:54:1901:62:2175:-156.565,0,-136.032	0/0:190:189,1:189:6606:1:36:0,-53.6223,-590.828	0/0:87:84,2:84:2968:2:72:0,-19.4581,-260.555	0/1:130:69,61:69:2423:61:2128:-150.868,0,-179.152	0/0:115:113,0:113:3964:0:0:0,-34.0164,-356.593	0/0:40:39,0:39:1378:0:0:0,-11.7402,-123.997	0/0:94:94,0:94:3338:0:0:0,-28.2968,-300.448	0/0:82:82,0:82:2859:0:0:0,-24.6845,-257.537	0/1:39:26,11:26:895:11:392:-23.1022,0,-69.3588	0/0:114:113,0:113:3994:0:0:0,-34.0164,-358.849	0/0:44:44,0:44:1542:0:0:0,-13.2453,-139.035	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8194	0/0:18:18,0:18:631:0:0:0,-5.41854,-57.1162	0/1:68:36,32:36:1252:32:1132:-80.5738,0,-92.5036	0/0:138:136,0:136:4750:0:0:0,-40.9401,-427.299	0/1:5:4,1:4:144:1:36:-2.06828,0,-11.8085	0/1:165:85,80:85:2998:80:2825:-203.568,0,-220.279	0/0:162:159,1:159:5571:1:36:0,-44.9263,-497.826	0/1:68:36,32:36:1263:32:1086:-76.6764,0,-93.4982	0/1:46:22,24:22:761:24:835:-61.1634,0,-54.9615	0/0:137:134,3:134:4708:3:104:0,-31.5941,-414.1	0/0:125:125,0:125:4386:0:0:0,-37.6287,-394.9	0/1:47:28,19:28:984:19:664:-45.2894,0,-74.4762	0/1:39:24,15:24:829:15:511:-32.7025,0,-63.1458	0/1:32:13,19:13:460:19:676:-51.077,0,-32.1027	0/1:16:5,11:5:180:11:373:-28.7028,0,-11.7347	0/0:113:113,0:113:3946:0:0:0,-34.0164,-355.185	0/1:77:47,30:47:1650:30:1028:-67.91,0,-125.587	0/0:103:102,1:102:3557:1:32:0,-27.823,-317.071	0/1:125:61,64:61:2112:64:2238:-161.87,0,-152.647	0/1:83:39,44:39:1363:44:1504:-106.687,0,-97.9442	0/1:103:76,26:76:2672:26:889:-47.5775,0,-209.604	0/1:15:8,7:8:282:7:229:-16.0529,0,-21.1958	0/1:77:39,37:39:1354:37:1271:-89.8483,0,-99.0138	0/0:108:107,0:107:3712:0:0:0,-32.2102,-333.822	0/1:180:103,77:103:3579:77:2722:-188.871,0,-268.136	0/1:44:25,19:25:896:19:672:-47.0429,0,-67.6644	0/0:59:58,0:58:2023:0:0:0,-17.4597,-182.019	0/0:38:38,0:38:1317:0:0:0,-11.4391,-118.826	0/0:101:101,0:101:3564:0:0:0,-30.404,-320.95	0/0:28:28,0:28:986:0:0:0,-8.42884,-89.0446	0/1:56:31,24:31:1106:24:852:-58.6286,0,-82.9328	0/1:53:24,28:24:853:28:968:-69.5826,0,-61.1578	0/1:67:40,27:40:1396:27:948:-64.2379,0,-105.764	0/1:108:51,55:51:1806:55:1913:-138.215,0,-130.583	0/1:63:21,38:21:749:38:1343:-102.167,0,-49.6245	0/0:146:146,0:146:5113:0:0:0,-43.9504,-460.248	0/0:92:92,0:92:3241:0:0:0,-27.6948,-291.861
chr11	28073291	.	C	G	44828.1	PASS	AB=0.454675;ABP=28.0094;AC=138;AF=0.75;AN=184;AO=2138;CIGAR=1X;DP=2917;DPB=2917;DPRA=8.08056;EPP=4645.62;EPPR=1683.73;GTI=0;LEN=1;MEANALT=1.05556;MQM=59.696;MQMR=60;NS=92;NUMALT=1;ODDS=1.57926;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75825;QR=27575;RO=774;RPL=14;RPP=4524.81;RPPR=1683.73;RPR=2124;RUN=1;SAF=14;SAP=4524.81;SAR=2124;SRF=0;SRP=1683.73;SRR=774;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:540:-48.9089,-4.51545,0	1/1:37:0,37:0:0:37:1312:-118.353,-11.1381,0	0/1:27:13,14:13:464:14:504:-37.5703,0,-33.9697	0/1:73:40,33:40:1440:33:1184:-84.8925,0,-107.923	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	0/1:23:12,11:12:432:11:373:-26.9702,0,-32.2975	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:41:0,41:0:0:41:1440:-129.888,-12.3422,0	0/1:50:29,21:29:1032:21:756:-53.3019,0,-78.142	1/1:22:0,22:0:0:22:788:-71.2414,-6.62266,0	1/1:27:0,27:0:0:27:945:-85.2699,-8.12781,0	1/1:21:0,21:0:0:21:718:-64.9073,-6.32163,0	0/1:25:15,10:15:527:10:343:-23.6748,0,-40.2344	1/1:15:0,15:0:0:15:513:-46.484,-4.51545,0	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:16:8,8:8:288:8:276:-20.3588,0,-21.4509	0/1:20:8,12:8:280:12:432:-33.2006,0,-19.5187	1/1:14:0,14:0:0:14:495:-44.883,-4.21442,0	0/1:34:14,20:14:496:20:716:-54.526,0,-34.7392	0/1:63:29,34:29:1032:34:1208:-90.0612,0,-74.2286	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:21:11,10:11:396:10:345:-25.0592,0,-29.6611	1/1:36:2,34:2:72:34:1215:-102.813,-4.00036,0	1/1:10:0,10:0:0:10:360:-32.7381,-3.0103,0	0/1:121:75,46:75:2684:46:1639:-111.356,0,-205.38	1/1:24:0,24:0:0:24:847:-76.5487,-7.22472,0	0/1:13:6,7:6:203:7:243:-18.2941,0,-14.6878	1/1:64:1,63:1:36:63:2237:-197.991,-15.6676,0	0/1:40:25,15:25:896:15:540:-36.8876,0,-68.9192	1/1:54:0,54:0:0:54:1923:-173.337,-16.2556,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:8:0,8:0:0:8:287:-26.1752,-2.40824,0	1/1:58:0,57:0:0:57:2005:-180.356,-17.1587,0	1/1:72:0,71:0:0:71:2520:-226.682,-21.3731,0	0/1:23:13,10:13:464:10:360:-25.8068,0,-35.1738	.:.:.:.:.:.:.:.	0/1:50:32,18:32:1136:18:648:-43.5942,0,-87.4974	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:31:0,31:0:0:31:1108:-100.025,-9.33193,0	1/1:23:0,23:0:0:23:800:-72.3124,-6.92369,0	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	1/1:70:0,70:0:0:70:2481:-223.542,-21.0721,0	0/1:48:24,24:24:836:24:834:-60.9262,0,-61.1053	1/1:55:0,55:0:0:55:1932:-174.153,-16.5567,0	1/1:37:0,37:0:0:37:1301:-117.389,-11.1381,0	0/1:30:14,16:14:504:16:555:-41.2418,0,-36.6672	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:4:0,4:0:0:4:135:-12.4825,-1.20412,0	1/1:29:0,29:0:0:29:1036:-93.5295,-8.72987,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:46:0,46:0:0:46:1622:-146.257,-13.8474,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:43:26,17:26:932:17:608:-42.1077,0,-71.2546	1/1:46:0,46:0:0:46:1629:-146.894,-13.8474,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/1:80:42,38:42:1504:38:1356:-98.2557,0,-111.572	1/1:62:0,62:0:0:62:2212:-199.335,-18.6639,0	0/1:27:19,8:19:676:8:284:-17.7755,0,-53.0402	0/1:23:13,10:13:468:10:356:-25.435,0,-35.536	1/1:100:0,99:0:0:99:3499:-314.474,-29.802,0	1/1:26:0,26:0:0:26:924:-83.4767,-7.82678,0	0/1:5:2,2:2:72:2:72:-5.36671,0,-5.36671	0/1:21:14,7:14:495:7:239:-15.5211,0,-38.5614	0/1:48:29,19:29:1032:19:649:-44.2762,0,-78.744	0/1:9:6,3:6:216:3:108:-7.34272,0,-17.0812	1/1:20:0,20:0:0:20:712:-64.3929,-6.0206,0	0/1:27:12,15:12:424:15:521:-39.0885,0,-30.3686	1/1:49:0,48:0:0:48:1707:-153.555,-14.4494,0	0/1:40:18,22:18:627:22:792:-59.5611,0,-44.7132	0/1:17:7,10:7:243:10:360:-27.6268,0,-17.09	0/1:27:17,10:17:608:10:351:-23.6919,0,-46.9242	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:43:21,22:21:756:22:769:-56.5843,0,-55.4229	1/1:39:0,39:0:0:39:1379:-124.402,-11.7402,0	0/1:63:33,30:33:1176:30:1067:-77.2783,0,-87.1829	0/1:51:29,22:29:1031:22:784:-55.5314,0,-77.7501	1/1:22:0,22:0:0:22:788:-71.2381,-6.62266,0	1/1:27:0,27:0:0:27:972:-87.7808,-8.12781,0	1/1:48:0,48:0:0:48:1717:-154.807,-14.4494,0	1/1:16:0,16:0:0:16:568:-51.4457,-4.81648,0	0/1:32:16,16:16:558:16:576:-42.542,0,-40.9135	0/1:29:14,15:14:491:15:536:-39.8449,0,-35.7912	0/1:11:7,4:7:248:4:144:-10.0023,0,-19.3529	0/1:38:18,20:18:648:20:704:-52.2454,0,-47.2127	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	1/1:47:0,47:0:0:47:1670:-150.576,-14.1484,0	1/1:26:0,26:0:0:26:928:-83.8349,-7.82678,0
chr11	28073334	.	GGCG	AGCA,AGCG	62049.6	PASS	AB=0.452617,0.538897;ABP=30.5852,21.5922;AC=138,46;AF=0.75,0.25;AN=184;AO=2161,775;CIGAR=1X2M1X,1X3M;DP=2951;DPB=2951.25;DPRA=8.175,1.06944;EPP=4695.56,1685.9;EPPR=0;GTI=0;LEN=4,1;MEANALT=1.67778,2.20833;MQM=59.6358,60;MQMR=0;NS=92;NUMALT=2;ODDS=1.40005;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=16,16;PQR=0;PRO=1;QA=76228,27649;QR=0;RO=0;RPL=2161,775;RPP=4695.56,1685.9;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=4695.56,1685.9;SAR=2161,775;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16,0:0:0:16,0:557,0:-50.439,-4.81648,0,-50.439,-4.81648,-50.439	1/1:37:0,37,0:0:0:37,0:1310,0:-118.173,-11.1381,0,-118.173,-11.1381,-118.173	1/2:29:0,16,13:0:0:16,13:561,459:-83.375,-37.7307,-32.9142,-45.9961,0,-42.0827	1/2:74:0,35,39:0:0:35,39:1232,1396:-212.774,-114.199,-103.663,-98.9266,0,-87.1864	1/2:28:0,13,14:0:0:13,14:462,500:-78.428,-40.7807,-36.8673,-37.6618,0,-33.4474	1/2:25:0,13,12:0:0:13,12:455,424:-71.8984,-34.8841,-30.9707,-37.3659,0,-33.7535	1/1:28:0,28,0:0:0:28,0:980,0:-88.5115,-8.42884,0,-88.5115,-8.42884,-88.5115	1/1:42:0,42,0:0:0:42,0:1466,0:-132.22,-12.6433,0,-132.22,-12.6433,-132.22	1/2:46:0,19,25:0:0:19,25:667,888:-126.628,-72.3584,-66.6388,-54.2674,0,-46.7417	1/1:23:0,23,0:0:0:23,0:810,0:-73.2192,-6.92369,0,-73.2192,-6.92369,-73.2192	1/1:28:0,28,0:0:0:28,0:980,0:-88.4699,-8.42884,0,-88.4699,-8.42884,-88.4699	1/1:22:0,21,0:0:0:21,0:732,0:-65.8803,-6.32163,0,-65.8803,-6.32163,-65.8803	1/2:26:0,10,15:0:0:10,15:347,527:-71.157,-42.9509,-39.9406,-28.258,0,-23.7425	1/1:15:0,14,0:0:0:14,0:496,0:-44.6649,-4.21442,0,-44.6649,-4.21442,-44.6649	1/2:15:0,5,10:0:0:5,10:180,360:-44.4211,-29.734,-28.2289,-15.0469,0,-12.0366	1/1:19:0,19,0:0:0:19,0:682,0:-61.7099,-5.71957,0,-61.7099,-5.71957,-61.7099	1/2:17:0,8,9:0:0:8,9:284,324:-49.9345,-26.7966,-24.3883,-23.4951,0,-20.7858	1/2:19:0,10,8:0:0:10,8:356,288:-52.5123,-23.4993,-20.489,-29.0115,0,-26.6032	1/1:15:0,15,0:0:0:15,0:528,0:-47.8503,-4.51545,0,-47.8503,-4.51545,-47.8503	1/2:34:0,20,14:0:0:20,14:717,500:-99.5958,-41.1218,-35.1012,-58.8316,0,-54.6172	1/2:64:0,35,29:0:0:35,29:1234,1044:-186.015,-85.5449,-75.0089,-100.827,0,-92.0971	1/2:21:0,9,12:0:0:9,12:318,428:-61.1429,-35.2464,-32.5372,-26.2511,0,-22.6387	1/2:21:0,10,11:0:0:10,11:352,392:-60.9626,-32.3087,-29.2984,-29.0078,0,-25.6965	1/1:37:0,35,2:0:0:35,2:1237,72:-111.268,-10.5361,0,-105.392,-4.30139,-104.79	1/1:10:0,10,0:0:0:10,0:354,0:-32.1932,-3.0103,0,-32.1932,-3.0103,-32.1932	1/2:123:0,46,77:0:0:46,77:1632,2739:-356.522,-223.574,-209.726,-133.304,0,-110.124	1/1:24:0,24,0:0:0:24,0:842,0:-76.0984,-7.22472,0,-76.0984,-7.22472,-76.0984	1/2:14:0,7,7:0:0:7,7:252,252:-41.4837,-20.9217,-18.8145,-20.9217,0,-18.8145	1/1:62:0,61,1:0:0:61,1:2152,36:-193.582,-18.3628,0,-190.644,-15.0656,-190.343	1/2:41:0,15,25:0:0:15,25:525,900:-116.197,-73.493,-68.9776,-42.7538,0,-35.228	1/1:55:0,55,0:0:0:55,0:1922,0:-173.195,-16.5567,0,-173.195,-16.5567,-173.195	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:8:0,8,0:0:0:8,0:276,0:-25.1746,-2.40824,0,-25.1746,-2.40824,-25.1746	1/1:59:0,59,0:0:0:59,0:2100,0:-189.235,-17.7608,0,-189.235,-17.7608,-189.235	1/1:71:0,70,0:0:0:70,0:2481,0:-223.175,-21.0721,0,-223.175,-21.0721,-223.175	1/2:23:0,11,12:0:0:11,12:386,424:-66.2866,-34.8841,-31.5727,-31.7544,0,-28.1421	.:.:.:.:.:.:.:.	1/2:50:0,18,32:0:0:18,32:636,1144:-145.424,-93.6366,-88.218,-52.1422,0,-42.5093	1/1:19:0,19,0:0:0:19,0:682,0:-61.7099,-5.71957,0,-61.7099,-5.71957,-61.7099	1/1:31:0,31,0:0:0:31,0:1092,0:-98.5816,-9.33193,0,-98.5816,-9.33193,-98.5816	1/1:23:0,23,0:0:0:23,0:826,0:-74.6605,-6.92369,0,-74.6605,-6.92369,-74.6605	1/1:25:0,25,0:0:0:25,0:868,0:-78.4338,-7.52575,0,-78.4338,-7.52575,-78.4338	1/1:63:0,63,0:0:0:63,0:2212,0:-199.342,-18.9649,0,-199.342,-18.9649,-199.342	1/2:48:0,22,26:0:0:22,26:792,921:-140.004,-75.3784,-68.7558,-64.983,0,-57.1562	1/1:58:0,58,0:0:0:58,0:2053,0:-185.041,-17.4597,0,-185.041,-17.4597,-185.041	1/1:36:0,36,0:0:0:36,0:1264,0:-114.062,-10.8371,0,-114.062,-10.8371,-114.062	1/2:31:0,17,14:0:0:17,14:591,504:-89.5235,-41.4837,-36.3662,-48.3941,0,-44.1797	1/1:31:0,31,0:0:0:31,0:1106,0:-99.8509,-9.33193,0,-99.8509,-9.33193,-99.8509	1/1:4:0,4,0:0:0:4,0:131,0:-12.1137,-1.20412,0,-12.1137,-1.20412,-12.1137	1/1:30:0,30,0:0:0:30,0:1061,0:-95.7876,-9.0309,0,-95.7876,-9.0309,-95.7876	1/1:16:0,16,0:0:0:16,0:540,0:-48.9184,-4.81648,0,-48.9184,-4.81648,-48.9184	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/1:46:0,46,0:0:0:46,0:1639,0:-147.781,-13.8474,0,-147.781,-13.8474,-147.781	1/1:11:0,11,0:0:0:11,0:386,0:-35.0754,-3.31133,0,-35.0754,-3.31133,-35.0754	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:43:0,16,25:0:0:16,25:574,896:-119.951,-73.1304,-68.3139,-46.8715,0,-39.345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chr11	28076945	.	C	T	155115	PASS	AB=0.5162;ABP=13.3527;AC=141;AF=0.75;AN=188;AO=7443;CIGAR=1X;DP=9657;DPB=9657;DPRA=0;EPP=16165.3;EPPR=4801.96;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9858;MQMR=60;NS=94;NUMALT=1;ODDS=4.53355;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=263249;QR=79049;RO=2210;RPL=7443;RPP=16165.3;RPPR=4801.96;RPR=0;RUN=1;SAF=0;SAP=16165.3;SAR=7443;SRF=0;SRP=4801.96;SRR=2210;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1161:-104.795,-9.93399,0	1/1:155:0,155:0:0:155:5461:-491.619,-46.6597,0	0/1:113:63,50:63:2256:50:1769:-125.475,0,-169.287	0/1:138:76,62:76:2724:62:2220:-158.522,0,-203.861	0/1:90:40,50:40:1432:50:1777:-133.118,0,-102.085	0/1:57:24,33:24:864:33:1161:-87.636,0,-60.9239	1/1:135:0,135:0:0:135:4805:-432.607,-40.6391,0	1/1:146:1,145:1:36:145:5139:-459.054,-40.3521,0	0/1:105:47,58:47:1692:58:2074:-155.304,0,-120.959	1/1:104:0,104:0:0:104:3728:-335.717,-31.3071,0	1/1:53:0,53:0:0:53:1893:-170.646,-15.9546,0	1/1:61:0,61:0:0:61:2177:-196.197,-18.3628,0	0/1:57:32,25:32:1148:25:896:-63.8016,0,-86.4711	1/1:85:0,85:0:0:85:3037:-273.559,-25.5876,0	0/1:84:38,46:38:1360:46:1629:-121.61,0,-97.4141	1/1:54:0,54:0:0:54:1932:-174.157,-16.2556,0	0/1:70:29,41:29:1035:41:1457:-110.349,0,-72.391	0/1:57:28,29:28:996:29:1040:-76.7557,0,-72.7962	1/1:46:0,46:0:0:46:1629:-146.897,-13.8474,0	0/1:169:81,88:81:2908:88:3121:-230.243,0,-211.081	0/1:169:91,78:91:3260:78:2774:-199.026,0,-242.746	0/1:94:54,39:54:1924:39:1373:-95.5112,0,-145.081	0/1:120:58,62:58:2057:62:2186:-160.879,0,-149.276	0/1:113:13,100:13:464:100:3565:-287.041,0,-8.08112	1/1:38:0,38:0:0:38:1339:-120.809,-11.4391,0	0/1:277:153,124:153:5469:124:4387:-311.617,0,-408.952	1/1:245:0,245:0:0:245:8722:-784.972,-73.7524,0	0/1:37:17,20:17:599:20:720:-53.9907,0,-43.1	1/1:206:0,206:0:0:206:7293:-656.42,-62.0122,0	0/1:290:137,152:137:4889:152:5425:-401.022,0,-352.805	1/1:228:4,224:4:144:224:7855:-693.67,-55.3212,0	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	1/1:12:1,11:1:36:11:358:-28.9349,-0.0140851,0	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:9:0,9:0:0:9:309:-28.1407,-2.70927,0	1/1:187:1,186:1:36:186:6647:-594.71,-52.6943,0	1/1:235:0,235:0:0:235:8228:-740.543,-70.7421,0	0/1:56:29,27:29:1040:27:972:-70.9402,0,-77.0567	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:130:70,60:70:2504:60:2152:-154.813,0,-186.479	1/1:46:0,46:0:0:46:1637:-147.617,-13.8474,0	1/1:267:2,265:2:68:265:9230:-824.217,-73.9173,0	1/1:64:0,64:0:0:64:2277:-205.19,-19.2659,0	1/1:49:0,49:0:0:49:1733:-156.253,-14.7505,0	1/1:116:0,115:0:0:115:4052:-364.506,-34.6185,0	0/1:145:82,63:82:2940:63:2256:-159.654,0,-221.185	1/1:208:0,208:0:0:208:7339:-660.561,-62.6142,0	1/1:114:0,114:0:0:114:4000:-360.19,-34.3174,0	0/1:124:44,80:44:1565:80:2830:-217.609,0,-103.812	1/1:137:0,137:0:0:137:4897:-440.881,-41.2411,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:168:0,168:0:0:168:5955:-536.056,-50.573,0	1/1:44:0,44:0:0:44:1561:-140.78,-13.2453,0	0/1:35:11,24:11:396:24:852:-66.4643,0,-25.4467	1/1:156:0,156:0:0:156:5519:-496.838,-46.9607,0	1/1:90:1,89:1:36:89:3063:-272.296,-23.4944,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:114:41,73:41:1476:73:2616:-201.37,0,-98.8188	1/1:102:0,102:0:0:102:3652:-328.884,-30.7051,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:185:100,85:100:3580:85:2985:-213.192,0,-266.717	1/1:193:1,192:1:36:192:6755:-604.428,-54.5005,0	0/1:53:34,19:34:1220:19:672:-44.8522,0,-94.1522	0/1:71:30,41:30:1068:41:1453:-109.691,0,-75.0589	1/1:154:0,154:0:0:154:5398:-485.953,-46.3586,0	1/1:136:2,134:2:72:134:4722:-418.303,-34.1034,0	0/1:26:13,13:13:464:13:468:-34.6329,0,-34.2707	0/1:88:40,48:40:1440:48:1705:-127.244,0,-103.407	0/1:83:33,50:33:1171:50:1773:-134.866,0,-80.7112	0/1:17:11,6:11:392:6:212:-14.3073,0,-30.5025	1/1:140:2,138:2:72:138:4849:-429.709,-35.3075,0	0/1:74:32,42:32:1144:42:1474:-110.674,0,-80.9933	1/1:198:0,198:0:0:198:6982:-628.445,-59.6039,0	0/1:185:77,107:77:2764:107:3746:-281.588,0,-193.252	0/1:138:73,65:73:2604:65:2252:-161.392,0,-193.067	0/1:171:78,93:78:2785:93:3282:-244.122,0,-199.413	0/1:41:14,27:14:496:27:919:-70.6701,0,-32.632	0/1:126:63,63:63:2244:63:2207:-160.961,0,-164.294	1/1:110:0,110:0:0:110:3827:-344.624,-33.1133,0	0/1:149:79,70:79:2836:70:2505:-180.849,0,-210.625	0/1:115:61,54:61:2192:54:1929:-139.266,0,-162.927	1/1:57:0,57:0:0:57:2029:-182.881,-17.1587,0	1/1:86:0,86:0:0:86:3064:-275.99,-25.8886,0	1/1:129:0,129:0:0:129:4632:-417.041,-38.8329,0	1/1:34:0,34:0:0:34:1193:-107.673,-10.235,0	0/1:81:39,42:39:1404:42:1481:-109.198,0,-102.276	0/1:61:31,30:31:1116:30:1076:-78.79,0,-82.3889	0/1:45:23,22:23:812:22:788:-57.6984,0,-59.8546	0/1:80:38,42:38:1364:42:1504:-111.572,0,-98.9783	0/1:62:45,17:45:1591:17:604:-36.0267,0,-124.816	1/1:169:3,166:3:108:166:5779:-510.096,-40.7989,0	1/1:78:0,78:0:0:78:2780:-250.442,-23.4803,0
chr11	28083682	.	GTTAT	ATTAT,ATTAA	138313	PASS	AB=0.547579,0.44975;ABP=61.9011,68.699;AC=140,46;AF=0.752688,0.247312;AN=186;AO=5179,1359;CIGAR=1X4M,1X3M1X;DP=6563;DPB=6563;DPRA=0,1.11368;EPP=11223,2945.36;EPPR=7.35324;GTI=2;LEN=1,5;MEANALT=1.78495,2.2549;MQM=59.4941,53.8764;MQMR=60;NS=93;NUMALT=2;ODDS=0.730467;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=183397,46846;QR=68;RO=2;RPL=3,1;RPP=11223,2945.36;RPPR=7.35324;RPR=5176,1358;RUN=1,1;SAF=5179,1359;SAP=11249.1,2954.04;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,27,0:0:0:27,0:956,0:-86.0985,-8.12781,0,-86.0985,-8.12781,-86.0985	1/1:77:0,77,0:0:0:77,0:2725,0:-245.399,-23.1793,0,-245.399,-23.1793,-245.399	1/2:80:0,41,39:0:0:41,39:1464,1358:-229.58,-110.226,-97.8838,-119.706,0,-107.965	1/2:165:0,102,62:0:0:102,62:3605,2146:-467.493,-173.938,-143.233,-293.686,0,-275.022	1/2:51:0,36,15:0:0:36,15:1288,514:-146.856,-41.8632,-31.0261,-105.339,0,-100.823	1/2:15:0,9,6:0:0:9,6:324,210:-43.8365,-17.3933,-14.684,-26.7966,0,-24.9904	1/1:78:0,78,0:0:0:78,0:2768,0:-249.352,-23.4803,0,-249.352,-23.4803,-249.352	1/1:179:0,178,0:0:0:178,0:6312,0:-567.401,-53.5833,0,-567.401,-53.5833,-567.401	1/2:58:0,27,31:0:0:27,31:964,1068:-165.28,-86.6891,-78.5613,-78.9408,0,-69.6089	1/1:83:0,82,0:0:0:82,0:2917,0:-262.42,-24.6845,0,-262.42,-24.6845,-262.42	1/1:21:0,21,0:0:0:21,0:752,0:-68.0039,-6.32163,0,-68.0039,-6.32163,-68.0039	1/1:39:0,39,0:0:0:39,0:1388,0:-125.179,-11.7402,0,-125.179,-11.7402,-125.179	1/2:50:0,30,20:0:0:30,20:1072,700:-144.491,-57.1103,-48.0794,-87.7331,0,-81.7125	1/1:55:0,55,0:0:0:55,0:1960,0:-176.522,-16.5567,0,-176.522,-16.5567,-176.522	1/2:37:0,19,18:0:0:19,18:680,639:-107.789,-52.3785,-46.659,-55.7665,0,-50.348	1/1:24:0,24,0:0:0:24,0:856,0:-77.3602,-7.22472,0,-77.3602,-7.22472,-77.3602	1/2:45:0,18,27:0:0:18,27:640,944:-128.538,-76.4073,-70.9887,-52.4823,0,-44.3545	1/2:17:0,6,11:0:0:6,11:216,388:-49.4937,-31.8663,-30.0602,-17.9843,0,-14.673	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/2:122:0,72,50:0:0:72,50:2550,1724:-347.883,-140.211,-118.537,-208.02,0,-192.968	1/2:68:0,35,33:0:0:35,33:1236,1137:-193.008,-92.3828,-81.8468,-100.973,0,-91.039	1/2:136:0,51,85:0:0:51,85:1802,2921:-384.024,-237.306,-221.953,-147.068,0,-121.48	1/2:35:0,13,21:0:0:13,21:468,719:-95.8685,-57.6853,-53.7719,-38.1775,0,-31.8559	1/1:121:0,116,3:0:0:116,3:4132,102:-371.681,-34.9195,0,-363.417,-26.6016,-362.514	1/1:69:0,69,0:0:0:69,0:2440,0:-219.811,-20.7711,0,-219.811,-20.7711,-219.811	1/2:292:0,150,142:0:0:150,142:5260,4890:-824.734,-396.791,-351.637,-428.289,0,-385.543	1/1:159:0,158,0:0:0:158,0:5613,0:-504.369,-47.5627,0,-504.369,-47.5627,-504.369	1/2:15:0,6,9:0:0:6,9:216,308:-42.876,-25.2448,-23.4386,-17.9834,0,-15.2741	1/1:210:0,205,2:0:0:205,2:7182,71:-646.081,-61.7112,0,-640.299,-55.9173,-639.697	1/2:119:0,82,37:0:0:82,37:2900,1280:-339.606,-103.785,-79.1006,-236.168,0,-225.03	1/1:103:0,101,2:0:0:101,2:3604,71:-324.205,-30.404,0,-318.424,-24.2685,-317.822	1/2:43:0,4,39:0:0:4,39:144,1343:-120.777,-109.025,-107.821,-12.1095,0,-0.369327	1/1:7:0,7,0:0:0:7,0:244,0:-22.2994,-2.10721,0,-22.2994,-2.10721,-22.2994	1/2:22:0,18,4:0:0:18,4:631,142:-63.2042,-11.8951,-6.47654,-51.6624,0,-50.4583	1/2:7:0,3,4:0:0:3,4:108,134:-19.985,-11.1618,-10.2587,-9.17208,0,-7.96796	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:118:0,118,0:0:0:118,0:4212,0:-379.205,-35.5215,0,-379.205,-35.5215,-379.205	1/1:190:0,190,0:0:0:190,0:6743,0:-606.538,-57.1957,0,-606.538,-57.1957,-606.538	1/2:19:0,5,14:0:0:5,14:180,483:-54.1295,-39.4953,-37.9901,-14.989,0,-10.7746	.:.:.:.:.:.:.:.	1/2:103:0,48,55:0:0:48,55:1708,1830:-287.102,-147.975,-133.525,-139.472,0,-122.915	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:122:0,121,0:0:0:121,0:4209,0:-378.629,-36.4246,0,-378.629,-36.4246,-378.629	1/1:34:0,34,0:0:0:34,0:1208,0:-109.026,-10.235,0,-109.026,-10.235,-109.026	1/1:39:0,39,0:0:0:39,0:1400,0:-126.295,-11.7402,0,-126.295,-11.7402,-126.295	1/1:81:0,81,0:0:0:81,0:2827,0:-254.662,-24.3834,0,-254.662,-24.3834,-254.662	1/2:119:0,77,42:0:0:77,42:2744,1450:-340.861,-117.339,-94.1594,-223.869,0,-211.226	1/1:153:0,153,0:0:0:153,0:5428,0:-488.531,-46.0576,0,-488.531,-46.0576,-488.531	1/1:133:0,133,0:0:0:133,0:4713,0:-424.147,-40.037,0,-424.147,-40.037,-424.147	1/2:73:0,48,25:0:0:48,25:1689,870:-208.331,-70.839,-56.3896,-137.84,0,-130.314	1/1:158:0,157,0:0:0:157,0:5559,0:-500.054,-47.2617,0,-500.054,-47.2617,-500.054	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:102:0,102,0:0:0:102,0:3620,0:-325.881,-30.7051,0,-325.881,-30.7051,-325.881	1/1:25:0,25,0:0:0:25,0:892,0:-80.5951,-7.52575,0,-80.5951,-7.52575,-80.5951	1/2:10:0,7,3:0:0:7,3:244,101:-28.3506,-8.50436,-6.39715,-20.186,0,-19.2829	1/1:68:0,67,0:0:0:67,0:2396,0:-215.467,-20.169,0,-215.467,-20.169,-215.467	1/1:18:0,18,0:0:0:18,0:625,0:-56.5642,-5.41854,0,-56.5642,-5.41854,-56.5642	1/1:3:0,3,0:0:0:3,0:104,0:-9.7009,-0.90309,0,-9.7009,-0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chr11	28083858	.	A	C	22200.1	PASS	AB=0.477845;ABP=15.0377;AC=46;AF=0.244681;AN=188;AO=1354;CIGAR=1X;DP=6357;DPB=6357;DPRA=0.844335;EPP=2917.18;EPPR=10788.8;GTI=2;LEN=1;MEANALT=1.03846;MQM=59.9202;MQMR=59.97;NS=94;NUMALT=1;ODDS=3.0243;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48306;QR=179093;RO=4999;RPL=1351;RPP=2917.18;RPPR=10788.8;RPR=3;RUN=1;SAF=0;SAP=2943.18;SAR=1354;SRF=0;SRP=10858.2;SRR=4999;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:77:76,1:76:2714:1:36:0,-19.581,-240.904	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:131:73,58:73:2619:58:2084:-148.395,0,-196.522	0/1:120:63,57:63:2244:57:2044:-148.108,0,-166.097	0/1:40:22,18:22:784:18:648:-46.6061,0,-58.8427	0/1:22:10,12:10:356:12:428:-32.2361,0,-25.7586	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.312	0/0:112:111,1:111:3957:1:36:0,-30.1171,-352.723	0/1:41:20,21:20:720:21:756:-56.025,0,-52.7865	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:49:23,26:23:828:26:936:-69.809,0,-60.0936	0/0:65:64,0:64:2295:0:0:0,-19.2659,-206.451	0/1:33:17,16:17:612:16:576:-42.241,0,-45.4794	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:26:16,10:16:576:10:345:-23.554,0,-44.3482	0/1:29:13,16:13:468:16:572:-43.0836,0,-33.7298	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:149:95,54:95:3403:54:1936:-129.663,0,-261.63	0/1:93:42,51:42:1497:51:1810:-135.184,0,-107.025	0/1:102:41,60:41:1440:60:2145:-162.661,0,-99.2367	0/1:39:15,24:15:540:24:860:-65.9817,0,-37.1964	0/0:34:33,1:33:1184:1:36:0,-6.63674,-103.27	0/0:87:87,0:87:3113:0:0:0,-26.1896,-280.395	0/1:194:95,99:95:3420:99:3533:-259.621,0,-249.602	0/0:212:212,0:212:7593:0:0:0,-63.8184,-683.401	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/0:196:196,0:196:7025:0:0:0,-59.0019,-632.309	0/1:111:59,52:59:2112:52:1830:-131.372,0,-156.935	0/0:40:39,1:39:1396:1:36:0,-8.44292,-122.341	0/1:18:16,2:16:576:2:72:-1.41818,0,-46.7564	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:25:8,17:8:288:17:612:-47.8877,0,-18.7417	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/0:136:136,0:136:4875:0:0:0,-40.9401,-438.897	0/1:37:20,17:20:707:17:612:-44.2753,0,-52.8165	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:142:87,55:87:3111:55:1957:-133.657,0,-237.47	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:145:145,0:145:5169:0:0:0,-43.6493,-465.347	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/1:78:42,36:42:1504:36:1292:-93.1034,0,-112.174	0/0:103:103,0:103:3688:0:0:0,-31.0061,-332.123	0/0:80:80,0:80:2853:0:0:0,-24.0824,-257.007	0/1:56:39,17:39:1400:17:597:-37.1984,0,-109.442	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.185	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:188:188,0:188:6740:0:0:0,-56.5936,-606.595	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	0/0:179:178,0:178:6370:0:0:0,-53.5833,-573.158	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/1:65:32,33:32:1133:33:1183:-87.2114,0,-82.7042	0/0:104:103,1:103:3700:1:36:0,-27.7088,-329.603	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:86:41,44:41:1472:44:1572:-115.824,0,-106.829	0/0:113:113,0:113:4064:0:0:0,-34.0164,-365.945	0/1:64:27,37:27:968:37:1313:-99.2038,0,-68.1714	0/1:55:37,18:37:1323:18:618:-39.3816,0,-102.815	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.05	0/0:163:163,0:163:5839:0:0:0,-49.0679,-525.621	0/1:37:14,23:14:504:23:824:-63.3452,0,-34.56	0/1:59:23,36:23:819:36:1288:-98.4605,0,-56.2708	0/1:34:21,13:21:756:13:460:-31.5004,0,-58.1322	0/1:32:12,20:12:432:20:720:-55.4958,0,-29.5882	0/0:171:171,0:171:6136:0:0:0,-51.4761,-552.33	0/1:43:26,17:26:932:17:608:-42.1077,0,-71.2546	0/0:84:84,0:84:3012:0:0:0,-25.2865,-271.309	0/1:85:30,55:30:1061:55:1948:-149.995,0,-70.2118	0/1:124:76,48:76:2724:48:1720:-117.756,0,-208.075	0/1:44:28,16:28:1004:16:576:-38.9297,0,-77.4305	0/1:34:21,13:21:756:13:464:-31.8625,0,-58.1322	0/1:73:29,44:29:1040:44:1568:-119.436,0,-71.9392	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/1:68:39,29:39:1404:29:1025:-72.0907,0,-106.177	0/1:42:20,22:20:716:22:777:-57.6081,0,-52.1241	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:61:60,1:60:2160:1:36:0,-14.7646,-191.068	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3602	0/1:41:23,18:23:828:18:640:-45.5871,0,-62.5019	0/1:45:27,18:27:968:18:640:-44.383,0,-73.891	0/1:44:16,28:16:567:28:1000:-77.0701,0,-38.1154	0/1:118:65,53:65:2336:53:1885:-134.253,0,-174.973	0/1:41:13,28:13:464:28:1008:-78.6941,0,-29.7553	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328
chr11	28083865	.	A	G	108019	PASS	AB=0.52485;ABP=18.2274;AC=142;AF=0.755319;AN=188;AO=5055;CIGAR=1X;DP=6410;DPB=6410;DPRA=0;EPP=10979.8;EPPR=2943.18;GTI=2;LEN=1;MEANALT=1.01064;MQM=59.9636;MQMR=59.8936;NS=94;NUMALT=1;ODDS=3.4272;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180972;QR=48450;RO=1354;RPL=5055;RPP=10979.8;RPPR=2943.18;RPR=0;RUN=1;SAF=0;SAP=10979.8;SAR=5055;SRF=0;SRP=2943.18;SRR=1354;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:79:1,78:1:36:78:2783:-247.112,-20.1831,0	1/1:45:0,45:0:0:45:1603:-144.56,-13.5464,0	0/1:133:59,73:59:2112:73:2603:-194.432,0,-150.263	0/1:122:59,63:59:2120:63:2260:-166.937,0,-154.337	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6061	0/1:23:12,11:12:432:11:392:-28.6964,0,-32.2975	1/1:66:0,66:0:0:66:2352:-211.939,-19.868,0	1/1:112:1,111:1:36:111:3968:-353.713,-30.1171,0	0/1:41:21,20:21:744:20:720:-52.7865,0,-54.9421	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:49:0,49:0:0:49:1751:-157.873,-14.7505,0	1/1:53:0,53:0:0:53:1888:-170.198,-15.9546,0	0/1:48:24,24:24:856:24:856:-62.9117,0,-62.9117	1/1:68:0,68:0:0:68:2440:-219.854,-20.47,0	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	1/1:44:0,44:0:0:44:1575:-142.041,-13.2453,0	0/1:28:10,18:10:360:18:648:-50.2148,0,-24.3155	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	1/1:27:0,27:0:0:27:955:-86.2648,-8.12781,0	0/1:150:54,96:54:1929:96:3439:-264.567,0,-128.73	0/1:94:51,43:51:1824:43:1544:-110.955,0,-136.143	0/1:98:59,39:59:2120:39:1389:-95.7963,0,-161.567	0/1:37:23,14:23:828:14:504:-34.56,0,-63.706	1/1:35:1,34:1:36:34:1224:-106.869,-6.93778,0	1/1:87:0,87:0:0:87:3106:-279.768,-26.1896,0	0/1:192:95,97:95:3378:97:3480:-255.603,0,-246.277	1/1:210:0,210:0:0:210:7523:-677.105,-63.2163,0	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	1/1:196:0,196:0:0:196:7031:-632.85,-59.0019,0	0/1:114:54,60:54:1932:60:2148:-159.27,0,-139.751	1/1:41:1,40:1:36:40:1421:-124.587,-8.74396,0	0/1:18:2,16:2:72:16:576:-46.7564,0,-1.41818	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:25:16,9:16:572:9:324:-21.9801,0,-44.2877	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:65:1,64:1:36:64:2295:-203.212,-15.9687,0	1/1:140:0,140:0:0:140:4994:-449.604,-42.1442,0	0/1:37:17,20:17:612:20:712:-53.2685,0,-44.2753	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:143:55,88:55:1972:88:3152:-240.853,0,-134.708	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:146:0,146:0:0:146:5240:-471.728,-43.9504,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:91:0,91:0:0:91:3260:-293.621,-27.3937,0	0/1:79:36,43:36:1292:43:1540:-115.112,0,-92.8024	1/1:106:0,106:0:0:106:3783:-340.669,-31.9092,0	1/1:81:0,81:0:0:81:2904:-261.595,-24.3834,0	0/1:55:17,38:17:603:38:1364:-106.504,0,-38.0429	1/1:86:0,86:0:0:86:3088:-278.143,-25.8886,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:189:0,189:0:0:189:6775:-609.789,-56.8947,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:13:5,8:5:176:8:288:-22.354,0,-12.2716	1/1:180:0,180:0:0:180:6425:-578.329,-54.1854,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:15:0,15:0:0:15:521:-47.2163,-4.51545,0	0/1:63:31,32:31:1112:32:1144:-84.2997,0,-81.4265	1/1:104:1,103:1:36:103:3700:-329.603,-27.7088,0	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/1:85:44,41:44:1584:41:1472:-107.189,0,-117.264	1/1:114:0,114:0:0:114:4088:-368.105,-34.3174,0	0/1:68:39,29:39:1396:29:1032:-72.7234,0,-105.469	0/1:55:18,37:18:633:37:1319:-102.455,0,-40.7384	1/1:118:0,118:0:0:118:4213:-379.343,-35.5215,0	1/1:163:0,163:0:0:163:5844:-526.071,-49.0679,0	0/1:36:22,14:22:792:14:504:-34.861,0,-60.7686	0/1:61:37,24:37:1324:24:864:-59.7197,0,-100.726	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	0/1:34:21,13:21:733:13:455:-31.0469,0,-56.0546	1/1:172:0,172:0:0:172:6159:-554.407,-51.7772,0	0/1:44:17,27:17:612:27:972:-74.5526,0,-42.1681	1/1:85:0,85:0:0:85:3048:-274.545,-25.5876,0	0/1:85:54,31:54:1940:31:1108:-74.4434,0,-149.289	0/1:126:49,77:49:1760:77:2764:-211.071,0,-120.753	0/1:44:16,28:16:576:28:1000:-77.0701,0,-38.9297	0/1:35:13,22:13:468:22:792:-61.0696,0,-31.9236	0/1:73:44,29:44:1580:29:1034:-71.3976,0,-120.516	1/1:93:0,93:0:0:93:3332:-300.097,-27.9958,0	0/1:69:30,39:30:1072:39:1404:-105.876,0,-76.0214	0/1:43:22,21:22:792:21:752:-55.0616,0,-58.6614	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:62:1,61:1:36:61:2175:-192.417,-15.0656,0	1/1:25:0,25:0:0:25:900:-81.3201,-7.52575,0	0/1:41:18,23:18:648:23:810:-60.8768,0,-46.3097	0/1:44:17,27:17:612:27:968:-74.192,0,-42.1681	0/1:45:29,16:29:1040:16:572:-38.2671,0,-80.368	0/1:121:54,67:54:1914:67:2400:-179.828,0,-135.918	0/1:42:29,13:29:1012:13:464:-29.4542,0,-78.7453	1/1:81:0,81:0:0:81:2899:-261.145,-24.3834,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0
chr11	28124971	.	TACGC	GACGC	25555.9	PASS	AB=0.4;ABP=363.04;AC=48;AF=0.255319;AN=188;AO=1668;CIGAR=1X4M;DP=9314;DPB=9314.8;DPRA=0.877533;EPP=3625.03;EPPR=16451.9;GTI=6;LEN=1;MEANALT=1.51923;MQM=59.9856;MQMR=59.9895;NS=94;NUMALT=1;ODDS=1.13554;PAIRED=0;PAIREDR=0;PAO=2;PQA=59;PQR=0;PRO=0;QA=59685;QR=263992;RO=7587;RPL=1662;RPP=3573.1;RPPR=16434.6;RPR=6;RUN=1;SAF=1662;SAP=3573.1;SAR=6;SRF=7585;SRP=16460.6;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:45,0:45:1566:0:0:0,-13.5463,-140.87	0/0:123:122,0:122:4231:0:0:0,-36.7257,-380.62	0/1:143:67,75:67:2351:75:2688:-199.167,0,-168.853	0/1:190:110,79:110:3790:79:2832:-197.893,0,-284.08	0/1:32:18,14:18:635:14:504:-36.0651,0,-47.8454	0/1:40:30,10:30:1055:10:360:-20.7031,0,-83.2195	0/0:173:173,0:173:6063:0:0:0,-52.0782,-545.786	0/0:169:168,0:168:5832:0:0:0,-50.573,-524.651	0/1:96:54,42:54:1879:42:1503:-106.665,0,-140.489	0/0:131:129,0:129:4496:0:0:0,-38.8329,-404.478	0/0:109:109,0:109:3765:0:0:0,-32.8123,-339.058	0/0:124:124,0:124:4272:0:0:0,-37.3277,-384.674	0/1:116:61,53:61:2123:53:1887:-135.484,0,-156.715	0/0:179:178,0:178:6156:0:0:0,-53.5833,-553.804	0/1:99:61,38:61:2147:38:1364:-93.2587,0,-163.697	0/0:78:78,0:78:2703:0:0:0,-23.4803,-243.412	0/1:113:73,39:73:2568:39:1383:-90.8001,0,-197.404	0/1:69:50,18:50:1725:18:644:-37.4608,0,-134.704	0/0:57:56,0:56:1969:0:0:0,-16.8577,-177.127	0/1:150:88,60:88:3060:60:2144:-148.316,0,-230.721	0/1:105:58,47:58:2019:47:1680:-119.879,0,-150.373	0/1:63:27,35:27:942:35:1256:-94.3798,0,-66.1279	0/1:67:33,34:33:1143:34:1215:-89.4316,0,-82.9501	0/1:103:92,11:92:3208:11:392:-4.61397,0,-257.942	0/0:90:89,0:89:3100:0:0:0,-26.7917,-278.872	0/1:290:164,124:164:5720:124:4435:-312.311,0,-427.95	0/0:293:290,0:290:10042:0:0:0,-87.2987,-903.398	0/1:30:18,12:18:628:12:432:-30.1903,0,-47.8146	0/0:187:184,0:184:6328:0:0:0,-55.3895,-569.274	0/1:90:64,25:64:2218:25:896:-53.8089,0,-172.736	0/0:102:102,0:102:3580:0:0:0,-30.7051,-322.413	0/1:8:3,2:3:101:2:72:-4.97307,0,-7.57145	0/0:7:7,0:7:246:0:0:0,-2.10721,-22.4818	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:5:4,1:4:132:1:36:-2.09312,0,-10.7	0/0:19:19,0:19:660:0:0:0,-5.71957,-59.7233	0/0:248:246,0:246:8598:0:0:0,-74.0534,-773.501	0/0:152:151,0:151:5278:0:0:0,-45.4555,-474.811	0/1:65:39,26:39:1360:26:932:-64.6319,0,-103.131	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:95:64,31:64:2258:31:1108:-71.4331,0,-174.887	0/0:57:57,0:57:1962:0:0:0,-17.1587,-176.854	0/0:155:155,0:155:5392:0:0:0,-46.6596,-485.427	0/0:110:110,0:110:3817:0:0:0,-33.1133,-343.736	0/0:65:64,0:64:2196:0:0:0,-19.2659,-197.635	0/0:153:151,0:151:5239:0:0:0,-45.4555,-471.306	0/1:128:75,53:75:2611:53:1908:-133.465,0,-196.708	0/0:134:134,0:134:4670:0:0:0,-40.338,-420.47	0/0:119:119,0:119:4174:0:0:0,-35.8226,-375.85	0/1:124:75,49:75:2615:49:1752:-120.635,0,-198.272	0/0:131:131,0:131:4589:0:0:0,-39.4349,-413.179	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0978	0/0:94:93,0:93:3270:0:0:0,-27.9958,-294.164	0/0:44:43,0:43:1488:0:0:0,-12.9443,-133.973	0/1:15:9,6:9:311:6:212:-14.9093,0,-23.8089	0/0:135:133,1:133:4577:1:36:0,-37.0996,-408.509	0/0:43:42,0:42:1486:0:0:0,-12.6433,-133.675	0/0:7:7,0:7:245:0:0:0,-2.10721,-22.3905	0/0:15:15,0:15:524:0:0:0,-4.51545,-47.4894	0/1:80:42,38:42:1485:38:1345:-97.2658,0,-109.862	0/0:157:156,0:156:5454:0:0:0,-46.9607,-490.643	0/1:4:1,3:1:32:3:108:-8.87105,0,-1.99519	0/1:153:95,56:95:3317:56:2004:-134.828,0,-252.947	0/0:170:168,1:168:5867:1:36:0,-47.6356,-524.557	0/1:93:48,45:48:1672:45:1612:-117.366,0,-122.77	0/1:76:45,31:45:1567:31:1112:-77.5131,0,-118.44	0/0:180:179,0:179:6215:0:0:0,-53.8844,-559.108	0/0:99:99,0:99:3462:0:0:0,-29.802,-311.797	0/1:64:29,35:29:1024:35:1256:-94.0794,0,-73.2078	0/1:55:41,13:41:1439:13:464:-25.4823,0,-113.19	0/1:87:61,25:61:2137:25:888:-54.1349,0,-166.497	0/1:16:13,3:13:460:3:108:-5.25869,0,-36.9193	0/0:80:79,0:79:2767:0:0:0,-23.7814,-248.953	0/1:91:36,55:36:1228:55:1964:-149.642,0,-83.4225	0/0:163:163,0:163:5700:0:0:0,-49.0679,-513.118	0/1:126:65,60:65:2256:60:2155:-156.229,0,-165.314	0/1:114:79,34:79:2774:34:1220:-75.7306,0,-215.528	0/1:111:71,40:71:2481:40:1428:-95.4032,0,-190.13	0/1:9:5,4:5:178:4:140:-10.2353,0,-13.6594	0/1:68:39,28:39:1317:28:1008:-70.6329,0,-98.4202	0/0:98:96,1:96:3350:1:36:0,-25.9615,-298.124	0/1:171:103,65:103:3563:65:2332:-159.235,0,-269.981	0/1:84:58,25:58:1989:25:892:-55.1967,0,-153.88	0/0:120:119,0:119:4117:0:0:0,-35.8226,-370.366	0/0:116:116,0:116:3987:0:0:0,-34.9195,-359.034	0/0:173:171,1:171:5933:1:36:0,-48.5387,-530.5	0/0:37:36,0:36:1259:0:0:0,-10.8371,-113.252	0/1:77:48,29:48:1640:29:1027:-69.5629,0,-124.706	0/1:97:57,40:57:1976:40:1436:-100.338,0,-148.914	0/1:89:54,35:54:1886:35:1256:-86.5536,0,-143.227	0/1:166:100,66:100:3489:66:2368:-163.407,0,-264.257	0/1:78:34,44:34:1163:44:1567:-117.841,0,-81.49	0/0:84:84,0:84:2934:0:0:0,-25.2865,-264.298	0/0:124:122,1:122:4261:1:36:0,-33.7882,-380.079
chr11	28125053	.	A	T	323252	PASS	AB=0.53964;ABP=95.6304;AC=142;AF=0.755319;AN=188;AO=11952;CIGAR=1X;DP=15151;DPB=15151;DPRA=0;EPP=25956.4;EPPR=6949.55;GTI=2;LEN=1;MEANALT=1;MQM=59.9976;MQMR=60;NS=94;NUMALT=1;ODDS=7.79996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=427870;QR=114441;RO=3199;RPL=7270;RPP=1219.87;RPPR=3.20647;RPR=4682;RUN=1;SAF=4682;SAP=1219.87;SAR=7270;SRF=1591;SRP=3.20647;SRR=1608;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,62:0:0:62:2228:-200.784,-18.6639,0	1/1:243:1,242:1:21:242:8692:-780.168,-71.0503,0	0/1:208:92,116:92:3308:116:4152:-311.249,0,-235.323	0/1:329:161,168:161:5768:168:6024:-443.188,0,-420.196	0/1:63:23,40:23:824:40:1436:-110.573,0,-55.5184	0/1:23:17,6:17:608:6:216:-12.8668,0,-48.1283	1/1:188:2,186:2:72:186:6664:-593,-49.7569,0	1/1:213:3,210:3:108:210:7513:-666.135,-54.0442,0	0/1:116:60,56:60:2140:56:2012:-146.434,0,-157.949	1/1:209:2,207:2:57:207:7409:-661.441,-57.502,0	1/1:120:0,120:0:0:120:4281:-385.467,-36.1236,0	1/1:129:1,128:1:36:128:4570:-407.865,-35.2346,0	0/1:137:64,73:64:2300:73:2600:-193.006,0,-166.02	1/1:164:3,161:3:108:161:5769:-509.247,-39.2938,0	0/1:150:60,90:60:2160:90:3216:-244.506,0,-149.512	1/1:130:0,130:0:0:130:4672:-420.639,-39.1339,0	0/1:95:46,49:46:1644:49:1756:-129.726,0,-119.651	0/1:91:40,51:40:1432:51:1832:-137.767,0,-101.784	1/1:74:5,69:5:180:69:2464:-205.462,-5.72416,0	0/1:286:119,167:119:4264:167:5957:-450.144,0,-297.843	0/1:233:84,149:84:3012:149:5336:-410.233,0,-201.171	0/1:116:68,48:68:2428:48:1716:-119.806,0,-183.857	0/1:146:62,84:62:2224:84:2999:-226.186,0,-156.474	1/1:184:13,171:13:464:171:6121:-508.891,-13.292,0	1/1:120:0,120:0:0:120:4282:-385.555,-36.1236,0	0/1:373:167,206:167:5972:206:7373:-551.332,0,-425.303	1/1:341:2,339:2:72:339:12156:-1087.04,-95.8145,0	0/1:64:30,34:30:1076:34:1224:-91.2011,0,-77.8869	1/1:456:3,453:3:93:453:16223:-1451.06,-128.593,0	0/1:180:86,94:86:3092:94:3364:-248.791,0,-224.321	1/1:196:3,193:3:108:193:6904:-611.353,-48.9267,0	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:13:0,13:0:0:13:460:-41.7354,-3.91339,0	1/1:336:2,334:2:72:334:12004:-1073.37,-94.3094,0	1/1:333:2,331:2:72:331:11868:-1061.14,-93.4063,0	0/1:86:43,43:43:1548:43:1540:-113.004,0,-113.724	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:252:130,122:130:4657:122:4357:-316.444,0,-343.43	1/1:53:1,52:1:36:52:1868:-164.801,-12.3563,0	1/1:237:0,237:0:0:237:8451:-760.591,-71.3441,0	1/1:118:4,114:4:144:114:4092:-355.151,-22.2079,0	1/1:117:1,116:1:36:116:4156:-370.624,-31.6222,0	1/1:144:0,144:0:0:144:5118:-460.763,-43.3483,0	0/1:169:74,95:74:2644:95:3373:-252.912,0,-187.333	1/1:297:1,296:1:36:296:10617:-951.838,-85.8076,0	1/1:186:0,186:0:0:186:6645:-598.128,-55.9916,0	0/1:238:100,138:100:3561:138:4925:-371.755,0,-249.053	1/1:289:0,289:0:0:289:10352:-931.601,-86.9977,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:272:1,271:1:36:271:9713:-870.517,-78.2819,0	1/1:130:0,130:0:0:130:4649:-418.571,-39.1339,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:289:0,289:0:0:289:10337:-930.252,-86.9977,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:144:57,87:57:2052:87:3108:-236.599,0,-141.603	1/1:211:2,209:2:72:209:7463:-664.874,-56.6806,0	0/1:7:6,1:6:212:1:32:-1.0921,0,-17.3176	0/1:355:147,208:147:5257:208:7464:-564.936,0,-366.4	1/1:289:4,285:4:144:285:10209:-905.422,-73.6841,0	0/1:138:63,75:63:2260:75:2668:-198.822,0,-162.12	0/1:138:66,72:66:2352:72:2568:-189.828,0,-170.397	1/1:269:1,268:1:36:268:9584:-858.918,-77.3788,0	1/1:305:3,302:3:108:302:10833:-964.792,-81.739,0	0/1:44:24,20:24:860:20:720:-51.8835,0,-64.4765	0/1:62:31,31:31:1116:31:1108:-81.3671,0,-82.0878	0/1:182:83,99:83:2984:99:3560:-265.819,0,-214.004	0/1:24:15,9:15:532:9:324:-22.2811,0,-40.9884	1/1:96:0,96:0:0:96:3418:-307.832,-28.8989,0	0/1:155:73,82:73:2612:82:2936:-217.815,0,-188.668	1/1:224:6,218:6:212:218:7828:-685.12,-48.0059,0	0/1:342:171,171:171:6124:171:6132:-449.026,0,-448.308	0/1:220:79,141:79:2805:141:5052:-388.598,0,-186.463	0/1:208:102,106:102:3625:106:3800:-279.583,0,-263.842	0/1:19:10,9:10:341:9:316:-23.0593,0,-25.2982	0/1:192:98,94:98:3520:94:3372:-245.898,0,-259.211	1/1:217:2,215:2:72:215:7655:-682.149,-58.4868,0	0/1:339:142,197:142:5070:197:7029:-530.624,0,-354.393	0/1:142:68,74:68:2421:74:2652:-196.18,0,-175.398	1/1:153:0,153:0:0:153:5468:-492.249,-46.0576,0	1/1:122:1,121:1:36:121:4340:-387.176,-33.1274,0	1/1:218:4,214:4:144:214:7679:-677.829,-52.3109,0	1/1:53:0,53:0:0:53:1889:-170.286,-15.9546,0	0/1:143:63,80:63:2256:80:2876:-216.029,0,-160.256	0/1:141:62,79:62:2224:79:2832:-212.673,0,-157.979	0/1:112:56,56:56:2004:56:2008:-147.278,0,-146.918	0/1:174:89,85:89:3169:85:3025:-220.101,0,-233.055	0/1:114:81,33:81:2908:33:1184:-72.5509,0,-227.638	1/1:269:1,268:1:36:268:9600:-860.355,-77.3788,0	1/1:189:1,188:1:36:188:6748:-603.793,-53.2964,0
chr11	28275181	.	T	C	82459.7	PASS	AB=0.532995;ABP=25.3643;AC=140;AF=0.744681;AN=188;AO=3930;CIGAR=1X;DP=5043;DPB=5043;DPRA=18.0645;EPP=8536.9;EPPR=2409.01;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.5163;MQMR=59.9658;NS=94;NUMALT=1;ODDS=1.08858;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139623;QR=39722;RO=1112;RPL=0;RPP=8536.9;RPPR=2417.69;RPR=3930;RUN=1;SAF=0;SAP=8536.9;SAR=3930;SRF=1;SRP=2409.01;SRR=1111;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:54:0,54:0:0:54:1919:-172.915,-16.2556,0	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:52:28,24:28:1004:24:812:-57.6469,0,-75.0223	0/1:96:46,50:46:1652:50:1760:-129.774,0,-120.07	0/1:21:8,13:8:288:13:459:-35.3174,0,-19.9458	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:70:0,70:0:0:70:2500:-225.219,-21.0721,0	1/1:106:1,104:1:36:104:3691:-328.525,-28.2948,0	0/1:67:19,48:19:676:48:1705:-133.508,0,-40.999	1/1:41:0,41:0:0:41:1453:-131.053,-12.3422,0	0/1:28:16,12:16:567:12:432:-30.7837,0,-42.9319	1/1:65:0,65:0:0:65:2315:-208.451,-19.567,0	0/1:68:27,41:27:972:41:1445:-109.83,0,-67.3279	1/1:32:0,32:0:0:32:1148:-103.623,-9.63296,0	0/1:47:19,28:19:684:28:991:-75.3518,0,-47.7419	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:28:10,18:10:360:18:642:-49.6365,0,-24.3155	0/1:29:11,18:11:396:18:640:-49.1994,0,-27.2529	1/1:31:0,31:0:0:31:1095:-98.8307,-9.33193,0	0/1:176:84,92:84:3000:92:3286:-242.954,0,-217.251	0/1:92:49,43:49:1737:43:1525:-109.774,0,-128.918	0/1:76:53,23:53:1896:23:813:-50.6108,0,-148.04	0/1:54:19,35:19:664:35:1260:-97.4335,0,-43.827	0/1:71:7,64:7:252:64:2263:-182.414,0,-1.65583	1/1:75:0,75:0:0:75:2656:-239.215,-22.5773,0	0/1:123:61,62:61:2180:62:2198:-161.026,0,-159.44	1/1:138:0,138:0:0:138:4940:-444.676,-41.5421,0	0/1:21:10,11:10:360:11:383:-28.4816,0,-26.4227	1/1:109:0,109:0:0:109:3863:-347.841,-32.8123,0	0/1:68:35,33:35:1245:33:1176:-85.6777,0,-91.8827	1/1:46:0,46:0:0:46:1618:-145.872,-13.8474,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:153:0,153:0:0:153:5438:-489.543,-46.0576,0	1/1:63:0,63:0:0:63:2222:-200.222,-18.9649,0	0/1:35:17,18:17:608:18:631:-46.5496,0,-44.516	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:55:34,21:34:1224:21:748:-50.7171,0,-93.9104	1/1:38:0,38:0:0:38:1355:-122.224,-11.4391,0	1/1:58:0,58:0:0:58:2048:-184.547,-17.4597,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:55:0,55:0:0:55:1950:-175.759,-16.5567,0	1/1:74:0,74:0:0:74:2640:-237.834,-22.2762,0	0/1:60:27,33:27:968:33:1165:-87.0932,0,-69.3756	1/1:73:0,73:0:0:73:2608:-234.922,-21.9752,0	1/1:56:0,56:0:0:56:1974:-177.915,-16.8577,0	0/1:49:24,25:24:860:25:877:-64.4083,0,-62.9714	1/1:122:0,122:0:0:122:4327:-389.586,-36.7257,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:58:0,58:0:0:58:2048:-184.479,-17.4597,0	1/1:34:0,34:0:0:34:1224:-110.458,-10.235,0	0/1:16:8,8:8:288:8:260:-18.8998,0,-21.4509	1/1:77:0,77:0:0:77:2746:-247.309,-23.1793,0	1/1:37:0,37:0:0:37:1320:-119.082,-11.1381,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:25:13,12:13:464:12:432:-31.6954,0,-34.5718	1/1:72:0,72:0:0:72:2576:-231.975,-21.6742,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:97:43,54:43:1548:54:1924:-144.228,0,-110.413	1/1:89:0,89:0:0:89:3188:-287.03,-26.7917,0	0/1:45:23,22:23:808:22:773:-56.2794,0,-59.4938	0/1:60:36,24:36:1296:24:860:-59.6437,0,-98.8821	1/1:112:1,111:1:36:111:3960:-352.902,-30.1171,0	1/1:69:1,68:1:36:68:2401:-212.667,-17.1728,0	0/1:11:3,8:3:108:8:276:-21.863,0,-6.76384	0/1:24:11,13:11:388:13:468:-35.2334,0,-28.0326	0/1:30:10,20:10:360:20:697:-54.0091,0,-23.7134	0/1:11:5,6:5:172:6:212:-16.1135,0,-12.5066	1/1:57:0,57:0:0:57:2016:-181.41,-17.1587,0	0/1:61:29,32:29:1040:32:1129:-83.4636,0,-75.5231	1/1:97:0,97:0:0:97:3446:-310.351,-29.1999,0	0/1:92:32,60:32:1125:60:2122:-163.322,0,-73.8613	0/1:34:20,14:20:712:14:496:-34.6251,0,-54.1698	0/1:39:23,16:23:828:16:576:-40.4348,0,-63.1039	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/1:42:18,24:18:644:24:851:-64.2483,0,-45.6473	1/1:37:0,37:0:0:37:1312:-118.382,-11.1381,0	0/1:127:53,74:53:1892:74:2614:-197.275,0,-132.327	0/1:39:18,21:18:644:21:756:-56.6271,0,-46.5504	1/1:64:0,64:0:0:64:2295:-206.788,-19.2659,0	1/1:43:1,42:1:36:42:1491:-130.866,-9.34602,0	1/1:95:1,94:1:36:94:3333:-296.581,-24.9996,0	1/1:19:0,19:0:0:19:684:-61.8603,-5.71957,0	0/1:69:36,33:36:1288:33:1165:-84.3331,0,-95.4241	0/1:50:20,30:20:705:30:1072:-81.6841,0,-48.7213	0/1:28:16,12:16:568:12:424:-30.0604,0,-43.023	0/1:56:27,29:27:964:29:1032:-76.3182,0,-70.2191	0/1:67:40,27:40:1431:27:964:-66.8996,0,-108.918	1/1:50:0,50:0:0:50:1762:-158.851,-15.0515,0	1/1:73:0,73:0:0:73:2607:-234.86,-21.9752,0
chr11	28452785	.	G	A	73045.1	PASS	AB=0.539032;ABP=29.7932;AC=139;AF=0.747312;AN=186;AO=3434;CIGAR=1X;DP=4375;DPB=4375;DPRA=0;EPP=7416.48;EPPR=2035.52;GTI=4;LEN=1;MEANALT=1.01075;MQM=59.9648;MQMR=60;NS=93;NUMALT=1;ODDS=0.462332;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=122732;QR=33652;RO=940;RPL=3429;RPP=7416.48;RPPR=2035.52;RPR=5;RUN=1;SAF=0;SAP=7459.85;SAR=3434;SRF=0;SRP=2044.19;SRR=940;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:884:-79.8784,-7.52575,0	1/1:29:0,29:0:0:29:1033:-93.2824,-8.72987,0	0/1:80:19,61:19:680:61:2170:-171.373,0,-37.4468	0/1:117:35,82:35:1252:82:2908:-226.734,0,-77.7646	0/1:28:3,25:3:108:25:896:-72.5315,0,-1.64633	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:40:2,38:2:72:38:1364:-116.224,-5.20448,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	0/1:37:17,20:17:604:20:720:-53.9907,0,-43.5525	1/1:36:0,36:0:0:36:1272:-114.78,-10.8371,0	0/1:16:6,10:6:216:10:348:-26.8373,0,-14.974	1/1:54:0,54:0:0:54:1926:-173.616,-16.2556,0	0/1:45:24,21:24:860:21:756:-54.8209,0,-64.1755	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:39:14,25:14:500:25:900:-69.5808,0,-33.596	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:23:13,10:13:468:10:356:-25.4576,0,-35.536	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:79:25,54:25:900:54:1940:-151.095,0,-57.5396	0/1:61:28,33:28:1000:33:1176:-87.7849,0,-71.9525	0/1:95:53,42:53:1904:42:1512:-107.777,0,-143.04	0/1:34:18,16:18:648:16:561:-40.5821,0,-48.4169	1/1:19:1,18:1:36:18:637:-54.0589,-2.1213,0	1/1:30:0,30:0:0:30:1051:-94.8996,-9.0309,0	0/1:146:88,58:88:3156:58:2064:-142.08,0,-240.314	1/1:100:0,100:0:0:100:3584:-322.766,-30.103,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	1/1:252:0,252:0:0:252:9012:-810.281,-75.8596,0	0/1:48:15,33:15:540:33:1188:-92.7792,0,-34.4871	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	.:.:.:.:.:.:.:.	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:108:0,108:0:0:108:3879:-349.303,-32.5112,0	1/1:54:0,54:0:0:54:1926:-173.616,-16.2556,0	0/1:20:10,10:10:356:10:360:-26.7237,0,-26.3606	1/1:2:0,2:0:0:2:61:-5.79323,-0.60206,0	0/1:48:15,33:15:536:33:1168:-90.9764,0,-34.1254	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:107:0,107:0:0:107:3817:-343.727,-32.2102,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:54:0,54:0:0:54:1913:-172.445,-16.2556,0	0/1:53:24,29:24:864:29:1040:-77.9598,0,-62.128	1/1:126:0,126:0:0:126:4495:-403.854,-37.9298,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:68:35,33:35:1256:33:1175:-85.5869,0,-92.8752	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	1/1:63:0,62:0:0:62:2197:-197.634,-18.6639,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:19:10,9:10:352:9:320:-23.4228,0,-26.2986	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:144:68,76:68:2431:76:2717:-201.424,0,-175.697	1/1:110:1,109:1:36:109:3908:-348.315,-29.515,0	0/1:27:14,13:14:496:13:468:-34.3318,0,-36.8465	0/1:50:24,26:24:860:26:932:-69.1474,0,-62.6703	1/1:116:1,115:1:32:115:4116:-367.421,-31.7202,0	1/1:49:2,47:2:72:47:1669:-143.658,-7.91375,0	0/1:19:11,8:11:387:8:288:-20.5478,0,-29.4464	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/1:31:13,18:13:464:18:644:-48.9587,0,-32.7656	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:67:0,67:0:0:67:2383:-214.727,-20.169,0	0/1:24:16,8:16:557:8:288:-19.0427,0,-43.2308	1/1:58:0,58:0:0:58:2078:-187.289,-17.4597,0	0/1:99:45,54:45:1597:54:1940:-145.074,0,-114.216	0/1:59:25,34:25:900:34:1220:-92.346,0,-63.5602	0/1:25:11,14:11:392:14:496:-37.4485,0,-28.0943	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:57:28,29:28:1004:29:1036:-76.3952,0,-73.5172	1/1:92:0,92:0:0:92:3266:-294.161,-27.6948,0	0/1:87:39,48:39:1396:48:1724:-129.256,0,-99.7495	0/1:57:39,18:39:1400:18:648:-41.4932,0,-109.14	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	1/1:73:0,73:0:0:73:2610:-235.148,-21.9752,0	1/1:14:0,14:0:0:14:485:-43.977,-4.21442,0	0/1:55:34,21:34:1224:21:756:-51.8106,0,-93.9104	0/1:32:10,22:10:360:22:792:-61.9727,0,-23.1113	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:45:29,16:29:1044:16:576:-38.6286,0,-80.7285	0/1:30:13,17:13:464:17:612:-46.3825,0,-33.0666	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	1/1:45:0,45:0:0:45:1611:-145.279,-13.5464,0
chr11	28452799	.	G	A	14063	PASS	AB=0.45045;ABP=45.6181;AC=46;AF=0.247312;AN=186;AO=910;CIGAR=1X;DP=4365;DPB=4365;DPRA=0.939902;EPP=1979.05;EPPR=7503.28;GTI=4;LEN=1;MEANALT=1;MQM=60;MQMR=59.9612;NS=93;NUMALT=1;ODDS=0.0118738;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=32305;QR=123689;RO=3454;RPL=910;RPP=1979.05;RPPR=7503.28;RPR=0;RUN=1;SAF=0;SAP=1979.05;SAR=910;SRF=0;SRP=7503.28;SRR=3454;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:80:61,19:61:2188:19:669:-36.4515,0,-172.969	0/1:114:82,32:82:2932:32:1125:-67.2386,0,-229.797	0/1:28:25,3:25:896:3:108:-1.64633,0,-72.5315	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:40:38,2:38:1360:2:72:0,-5.20448,-115.864	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:36:19,17:19:680:17:597:-43.219,0,-50.6921	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/1:16:10,6:10:360:6:212:-14.6083,0,-27.9278	0/0:55:54,1:54:1944:1:21:0,-14.4567,-173.136	0/1:45:21,24:21:752:24:864:-64.5362,0,-54.4599	0/0:27:27,0:27:950:0:0:0,-8.12781,-85.8134	0/1:40:26,14:26:927:14:500:-33.295,0,-71.7062	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:23:10,13:10:356:13:460:-34.8117,0,-25.4576	0/1:21:7,14:7:252:14:504:-39.3765,0,-16.7073	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:78:54,24:54:1940:24:860:-54.2415,0,-151.396	0/1:59:34,25:34:1212:25:883:-62.0267,0,-91.6256	0/1:93:42,51:42:1508:51:1828:-136.805,0,-108.019	0/1:34:16,18:16:568:18:640:-47.6943,0,-41.2168	0/0:19:18,1:18:648:1:36:0,-2.12129,-55.0536	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:147:61,86:61:2196:86:3069:-232.187,0,-153.654	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:250:250,0:250:8961:0:0:0,-75.2575,-805.691	0/1:48:33,15:33:1184:15:524:-33.038,0,-92.4189	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.425	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	.:.:.:.:.:.:.:.	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:21:11,10:11:392:10:356:-26.0596,0,-29.2984	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:49:34,15:34:1204:15:525:-32.8276,0,-93.9154	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.479	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:31:30,1:30:1072:1:36:0,-5.73365,-93.1942	0/0:55:54,0:54:1932:0:0:0,-16.2556,-173.768	0/1:52:29,23:29:1036:23:801:-56.7531,0,-77.9004	0/0:127:127,0:127:4556:0:0:0,-38.2308,-409.264	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:69:36,33:36:1288:33:1172:-85.0164,0,-95.4525	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2452	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:19:9,10:9:324:10:345:-25.6613,0,-23.7863	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:147:77,70:77:2740:70:2462:-177.581,0,-202.592	0/0:111:110,1:110:3948:1:36:0,-29.8161,-351.912	0/1:25:13,12:13:468:12:428:-31.3331,0,-34.9339	0/1:46:24,22:24:856:22:773:-56.0421,0,-63.5137	0/0:117:115,2:115:4116:2:72:0,-28.3838,-363.783	0/0:50:48,2:48:1720:2:72:0,-8.21478,-148.249	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:30:18,12:18:648:12:432:-30.1903,0,-49.621	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/1:24:8,16:8:288:16:557:-43.2308,0,-19.0427	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/1:97:54,43:54:1925:43:1539:-109.603,0,-144.325	0/1:55:34,21:34:1220:21:739:-50.2757,0,-93.5502	0/1:25:14,11:14:504:11:392:-28.0943,0,-38.1723	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:56:29,27:29:1044:27:952:-69.1375,0,-77.4171	0/0:94:94,0:94:3364:0:0:0,-28.2968,-302.976	0/1:86:50,36:50:1800:36:1284:-89.9748,0,-136.394	0/1:57:19,38:19:684:38:1360:-105.542,0,-44.7316	0/1:25:13,12:13:464:12:428:-31.3331,0,-34.5718	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:54:21,33:21:756:33:1180:-90.2524,0,-52.1116	0/1:33:23,10:23:824:10:360:-22.8103,0,-64.5493	0/1:17:6,11:6:212:11:396:-30.8652,0,-14.3073	0/1:46:17,29:17:599:29:1028:-78.9857,0,-40.3907	0/1:29:17,12:17:608:12:432:-30.4913,0,-46.3222	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.321
chr11	28480691	.	C	G	20550.3	PASS	AB=0.493802;ABP=3.84468;AC=50;AF=0.265957;AN=188;AO=1251;CIGAR=1X;DP=5432;DPB=5432;DPRA=0.890618;EPP=2719.52;EPPR=9081.94;GTI=3;LEN=1;MEANALT=1;MQM=59.9936;MQMR=59.9909;NS=94;NUMALT=1;ODDS=0.535365;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44775;QR=149290;RO=4181;RPL=0;RPP=2719.52;RPPR=9081.94;RPR=1251;RUN=1;SAF=1251;SAP=2719.52;SAR=0;SRF=4181;SRP=9081.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:57:26,31:26:932:31:1108:-82.8723,0,-67.0402	0/1:76:44,32:44:1584:32:1144:-80.3912,0,-119.973	0/1:29:14,15:14:496:15:540:-40.2067,0,-36.2444	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/0:60:60,0:60:2124:0:0:0,-18.0618,-191.429	0/1:24:14,10:14:496:10:360:-25.5196,0,-37.7495	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964	0/1:75:37,38:37:1320:38:1364:-100.483,0,-96.5247	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/1:41:18,23:18:648:23:824:-62.1411,0,-46.3097	0/0:80:80,0:80:2856:0:0:0,-24.0824,-257.278	0/0:64:64,0:64:2275:0:0:0,-19.2659,-205.012	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/1:66:39,27:39:1396:27:968:-67.5694,0,-106.071	0/1:65:40,25:40:1424:25:900:-61.7541,0,-108.891	0/0:43:42,1:42:1491:1:36:0,-9.34601,-130.886	0/1:74:53,21:53:1892:21:756:-46.091,0,-148.282	0/1:56:36,20:36:1288:20:720:-48.2711,0,-99.3659	0/1:48:24,24:24:860:24:860:-63.2724,0,-63.2724	0/1:33:22,11:22:788:11:388:-25.3234,0,-61.3108	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/0:57:56,1:56:1992:1:32:0,-13.9594,-176.355	0/1:92:53,39:53:1900:39:1400:-98.6044,0,-143.583	0/0:129:129,0:129:4604:0:0:0,-38.8329,-414.526	0/1:29:16,13:16:568:13:468:-33.7298,0,-42.722	0/0:147:147,0:147:5240:0:0:0,-44.2514,-471.74	0/1:49:27,22:27:964:22:784:-56.1334,0,-72.3264	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:122:122,0:122:4368:0:0:0,-36.7257,-393.294	0/0:78:78,0:78:2783:0:0:0,-23.4803,-250.711	0/1:61:28,33:28:1004:33:1179:-88.0544,0,-72.313	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:67:44,23:44:1568:23:802:-52.3268,0,-121.243	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:59:24,35:24:856:35:1260:-95.9447,0,-59.6003	0/0:58:58,0:58:2071:0:0:0,-17.4597,-186.66	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:188:26,162:26:920:162:5799:-465.43,0,-26.5234	0/0:79:79,0:79:2812:0:0:0,-23.7814,-253.321	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:173:173,0:173:6195:0:0:0,-52.0782,-557.646	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:14:7,7:7:248:7:248:-18.4498,0,-18.4498	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:34:31,3:31:1112:3:108:0,-0.15985,-90.3162	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:41:21,20:21:752:20:716:-52.4255,0,-55.3454	0/0:108:107,1:107:3796:1:36:0,-28.913,-338.24	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:83:38,45:38:1360:45:1599:-119.213,0,-97.7151	0/0:78:77,1:77:2740:1:36:0,-19.8821,-243.245	0/1:51:30,21:30:1072:21:752:-52.6537,0,-81.4399	0/1:39:15,24:15:540:24:864:-66.3424,0,-37.1964	0/0:79:77,2:77:2743:2:72:0,-16.9446,-240.253	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:40:19,21:19:684:21:756:-56.326,0,-49.8491	0/1:59:38,21:38:1348:21:752:-50.2455,0,-103.859	0/1:64:38,26:38:1360:26:911:-63.039,0,-103.435	0/1:12:5,7:5:176:7:252:-19.4166,0,-12.5727	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/1:30:22,8:22:792:8:288:-17.2365,0,-62.5748	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:98:60,38:60:2140:38:1364:-93.5598,0,-163.367	0/1:16:13,3:13:464:3:108:-5.25869,0,-37.281	0/1:61:31,30:31:1108:30:1076:-78.79,0,-81.6682	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:55:19,36:19:672:36:1296:-100.387,0,-44.2502	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/1:74:41,33:41:1472:33:1188:-84.9524,0,-110.5	0/1:93:48,45:48:1704:45:1607:-116.924,0,-125.65	0/1:76:35,41:35:1240:41:1476:-110.258,0,-89.0262	0/0:97:97,0:97:3471:0:0:0,-29.1999,-312.601	0/0:118:118,0:118:4210:0:0:0,-35.5215,-379.081	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:63:29,34:29:1031:34:1224:-91.5022,0,-74.1377	0/1:73:38,35:38:1332:35:1252:-91.0083,0,-98.2016	0/1:84:50,34:50:1779:34:1198:-82.8375,0,-135.106	0/1:87:39,48:39:1387:48:1720:-128.896,0,-98.9385	0/1:74:31,43:31:1112:43:1540:-116.617,0,-78.1151	0/0:57:57,0:57:2043:0:0:0,-17.1587,-184.141	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355
chr11	28489728	.	C	T	37942.8	PASS	AB=0.617183;ABP=395.895;AC=47;AF=0.25;AN=188;AO=2047;CIGAR=1X;DP=6098;DPB=6098;DPRA=1.36707;EPP=36.2443;EPPR=8799.65;GTI=5;LEN=1;MEANALT=1;MQM=41.172;MQMR=59.9852;NS=94;NUMALT=1;ODDS=0.262465;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73349;QR=143554;RO=4051;RPL=7;RPP=4387.42;RPPR=8799.65;RPR=2040;RUN=1;SAF=1119;SAP=41.7096;SAR=928;SRF=0;SRP=8799.65;SRR=4051;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1591:0:0:0,-13.5463,-143.48	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/1:104:38,66:38:1352:66:2352:-137.811,0,-90.6732	0/1:182:77,105:77:2742:105:3776:-241.45,0,-192.234	0/1:43:13,30:13:460:30:1061:-64.2448,0,-28.7911	0/1:35:18,17:18:640:17:601:-30.732,0,-47.3933	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:55:53,2:53:1848:2:72:0,-12.2268,-162.267	0/1:88:29,59:29:1032:59:2120:-139.017,0,-66.7028	0/0:59:59,0:59:2077:0:0:0,-17.7608,-187.199	0/1:58:21,37:21:744:37:1324:-82.8143,0,-49.1206	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.87	0/1:74:21,53:21:743:53:1904:-122.325,0,-44.9171	0/0:32:32,0:32:1130:0:0:0,-9.63296,-102.007	0/0:36:36,0:36:1274:0:0:0,-10.8371,-114.961	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.7474	0/1:43:11,32:11:392:32:1152:-60.765,0,-22.6758	0/1:57:11,46:11:387:46:1652:-88.0137,0,-18.0072	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:73:35,38:35:1239:38:1347:-89.4028,0,-89.8385	0/1:130:48,82:48:1681:82:2940:-188.13,0,-112.44	0/1:28:12,16:12:428:16:572:-36.6146,0,-30.43	0/1:73:38,35:38:1337:35:1260:-73.0626,0,-98.6527	0/1:40:34,6:34:1207:6:212:-1.4849,0,-96.8941	0/0:39:39,0:39:1366:0:0:0,-11.7402,-123.237	0/1:208:87,121:87:3080:121:4327:-273.303,0,-214.814	0/0:131:131,0:131:4625:0:0:0,-39.4349,-416.419	0/1:41:12,29:12:423:29:1040:-67.1779,0,-26.0628	0/0:170:170,0:170:6031:0:0:0,-51.1751,-542.898	0/1:81:53,28:53:1891:28:993:-46.2579,0,-146.084	0/0:117:116,1:116:4152:1:36:0,-32.5719,-371.212	0/1:4:2,2:2:68:2:72:-3.30436,0,-5.25359	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:5:4,1:4:136:1:36:-0.773716,0,-11.0704	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:81:81,0:81:2859:0:0:0,-24.3834,-257.547	0/0:84:84,0:84:2966:0:0:0,-25.2865,-267.175	0/1:61:9,52:9:311:52:1864:-118.736,0,-9.9609	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:117:54,63:54:1896:63:2264:-135.483,0,-135.695	0/0:15:15,0:15:514:0:0:0,-4.51545,-46.5838	0/0:77:77,0:77:2739:0:0:0,-23.1793,-246.753	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3292	0/0:20:20,0:20:698:0:0:0,-6.0206,-63.1414	0/0:91:88,3:88:3136:3:108:0,-17.3186,-272.389	0/1:75:37,38:37:1303:38:1364:-75.4737,0,-94.9933	0/0:64:64,0:64:2270:0:0:0,-19.2659,-204.562	0/0:90:89,1:89:3168:1:36:0,-23.4944,-281.745	0/1:109:52,57:52:1851:57:2039:-117.073,0,-134.057	0/0:92:92,0:92:3269:0:0:0,-27.6948,-294.43	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:93:93,0:93:3302:0:0:0,-27.9958,-297.4	0/0:67:67,0:67:2364:0:0:0,-20.169,-213.011	0/1:3:2,1:2:72:1:36:-1.37578,0,-5.93363	0/0:115:115,0:115:4066:0:0:0,-34.6184,-366.128	0/0:45:45,0:45:1595:0:0:0,-13.5463,-143.84	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:65:35,30:35:1229:30:1076:-63.4271,0,-91.3449	0/0:62:61,1:61:2141:1:36:0,-16.0153,-190.308	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:164:66,98:66:2356:98:3516:-231.526,0,-162.929	0/0:128:124,4:124:4372:4:144:0,-28.732,-383.856	0/1:68:16,52:16:554:52:1868:-106.584,0,-29.7149	0/1:70:33,37:33:1155:37:1320:-75.2806,0,-83.1835	0/0:177:177,0:177:6287:0:0:0,-53.2823,-565.929	0/0:118:116,2:116:4102:2:72:0,-30.4892,-364.337	0/1:36:13,23:13:464:23:828:-54.4586,0,-31.2604	0/1:45:17,28:17:595:28:1004:-62.9089,0,-40.3303	0/1:81:15,66:15:523:66:2357:-153.303,0,-23.015	0/1:10:4,6:4:144:6:216:-13.2981,0,-10.3033	0/0:106:106,0:106:3775:0:0:0,-31.9092,-339.95	0/1:84:20,64:20:720:64:2283:-159.366,0,-39.8423	0/0:97:97,0:97:3450:0:0:0,-29.1999,-310.713	0/1:122:56,66:56:1981:66:2376:-146.909,0,-141.837	0/1:74:40,34:40:1424:34:1224:-68.0234,0,-106.181	0/1:75:11,64:11:392:64:2296:-137.932,0,-13.0346	0/1:4:3,1:3:108:1:32:-1.99519,0,-8.87105	0/1:64:27,37:27:964:37:1328:-81.9789,0,-67.8109	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/1:121:53,68:53:1875:68:2436:-148.369,0,-132.604	0/1:88:25,63:25:896:63:2260:-142.165,0,-54.4697	0/1:78:18,60:18:624:60:2148:-144.255,0,-33.0038	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.385	0/0:23:23,0:23:819:0:0:0,-6.92369,-74.0316	0/1:57:19,38:19:680:38:1364:-82.9264,0,-44.3705	0/1:63:20,43:20:712:43:1540:-94.9826,0,-45.4418	0/1:40:10,30:10:360:30:1080:-65.3745,0,-20.7031	0/1:90:28,62:28:1000:62:2232:-147.104,0,-63.2227	0/1:61:13,48:13:464:48:1717:-121.724,0,-23.7347	0/0:57:57,0:57:2014:0:0:0,-17.1587,-181.532	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154
chr11	28495435	.	GAC	GAT,AAT	161309	PASS	AB=0.511951,0.486659;ABP=7.47395,8.57236;AC=140,48;AF=0.744681,0.255319;AN=188;AO=5736,1762;CIGAR=2M1X,1X1M1X;DP=7511;DPB=7511.67;DPRA=0,1.22321;EPP=12458.6,3829.14;EPPR=16.0391;GTI=2;LEN=1,3;MEANALT=1.68085,2.07018;MQM=59.9716,51.1067;MQMR=60;NS=94;NUMALT=2;ODDS=0.099768;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,36;PQR=0;PRO=0;QA=205117,62706;QR=198;RO=6;RPL=5736,1762;RPP=12458.6,3829.14;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12458.6,3829.14;SAR=5736,1762;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/1:81:0,81,0:0:0:81,0:2880,0:-259.436,-24.3834,0,-259.436,-24.3834,-259.436	1/2:85:0,42,43:0:0:42,43:1497,1525:-245.912,-123.89,-111.247,-122.376,0,-109.432	1/2:143:0,68,75:0:0:68,75:2440,2650:-414.297,-215.268,-194.798,-199.385,0,-176.808	1/2:47:0,32,15:0:0:32,15:1148,538:-137.723,-44.0839,-34.4509,-93.9969,0,-89.4814	1/2:15:0,8,7:0:0:8,7:288,252:-44.2973,-20.7969,-18.3887,-23.8592,0,-21.752	1/1:98:1,97,0:1:28:97,0:3445,0:-307.464,-26.7012,0,-307.765,-29.1999,-309.983	1/1:97:0,96,1:0:0:96,1:3440,36:-309.455,-28.8989,0,-306.535,-25.6211,-306.234	1/2:69:0,42,26:0:0:42,26:1512,921:-197.991,-74.6145,-61.9713,-123.391,0,-115.565	1/1:100:0,100,0:0:0:100,0:3558,0:-320.426,-30.103,0,-320.426,-30.103,-320.426	1/2:50:0,28,22:0:0:28,22:998,781:-145.06,-63.7089,-55.28,-81.706,0,-75.0834	1/1:72:0,72,0:0:0:72,0:2570,0:-231.546,-21.6742,0,-231.546,-21.6742,-231.546	1/2:78:0,40,38:0:0:40,38:1436,1364:-227.195,-110.055,-98.0139,-117.496,0,-106.057	1/1:84:0,84,0:0:0:84,0:3024,0:-272.372,-25.2865,0,-272.372,-25.2865,-272.372	1/1:70:0,70,0:0:0:70,0:2508,0:-225.959,-21.0721,0,-225.959,-21.0721,-225.959	1/1:49:1,48,0:1:34:48,0:1720,0:-151.687,-11.3516,0,-151.988,-14.4494,-154.745	1/2:64:0,27,37:0:0:27,37:968,1316:-185.634,-106.68,-98.5525,-79.3096,0,-68.1714	1/2:71:0,28,43:0:0:28,43:1008,1507:-203.927,-121.674,-113.245,-82.6075,0,-69.6632	1/1:39:0,39,0:0:0:39,0:1404,0:-126.659,-11.7402,0,-126.659,-11.7402,-126.659	1/2:168:0,107,61:0:0:107,61:3824,2187:-490.138,-178.348,-146.137,-312.147,0,-293.785	1/2:81:0,36,45:0:0:36,45:1266,1618:-234.841,-131.793,-120.956,-103.402,0,-89.8552	1/2:114:0,38,76:0:0:38,76:1368,2708:-332.238,-220.615,-209.176,-111.982,0,-89.1034	1/2:11:0,6,5:0:0:6,5:208,180:-31.9149,-15.0154,-13.2092,-17.2529,0,-15.7478	1/2:61:0,55,6:0:0:55,6:1927,216:-174.559,-17.7702,-1.21352,-157.145,0,-155.338	1/1:73:0,73,0:0:0:73,0:2608,0:-234.924,-21.9752,0,-234.924,-21.9752,-234.924	1/2:249:0,117,132:0:0:117,132:4189,4711:-725.056,-383.443,-348.223,-341.969,0,-302.233	1/1:255:0,252,3:0:0:252,3:9014,100:-810.813,-75.8596,0,-802.719,-67.4328,-801.816	1/2:31:0,17,14:0:0:17,14:612,500:-90.2423,-40.3011,-35.1835,-50.2959,0,-46.0815	1/1:299:0,298,1:0:0:298,1:10640,36:-957.119,-89.7069,0,-954.185,-86.4134,-953.884	1/2:67:0,37,30:0:0:37,30:1309,1075:-193.681,-87.0633,-75.9252,-106.971,0,-97.9405	1/1:56:0,55,0:0:0:55,0:1946,0:-175.052,-16.5567,0,-175.052,-16.5567,-175.052	1/2:8:0,3,5:0:0:3,5:108,180:-23.8054,-14.9927,-14.0896,-9.17208,0,-7.66693	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/2:3:0,1,2:0:0:1,2:36,72:-9.13566,-6.1976,-5.89657,-3.29724,0,-2.69518	1/2:8:0,7,1:0:0:7,1:248,36:-23.4773,-3.27774,-1.17053,-20.557,0,-20.256	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:171:1,170,0:1:36:170,0:6108,0:-546.22,-47.8779,0,-546.521,-51.1751,-549.458	1/1:179:0,178,0:0:0:178,0:6343,0:-570.601,-53.5833,0,-570.601,-53.5833,-570.601	1/2:62:0,30,32:0:0:30,32:1068,1141:-179.552,-92.5055,-83.4746,-87.4012,0,-77.7682	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:84:0,47,37:0:0:47,37:1688,1310:-244.022,-106.319,-92.1702,-138.059,0,-126.92	1/1:39:0,39,0:0:0:39,0:1404,0:-126.659,-11.7402,0,-126.659,-11.7402,-126.659	1/1:80:0,80,0:0:0:80,0:2868,0:-258.312,-24.0824,0,-258.312,-24.0824,-258.312	1/1:64:0,64,0:0:0:64,0:2304,0:-207.62,-19.2659,0,-207.62,-19.2659,-207.62	1/1:58:0,58,0:0:0:58,0:2088,0:-188.19,-17.4597,0,-188.19,-17.4597,-188.19	1/1:63:0,63,0:0:0:63,0:2249,0:-202.671,-18.9649,0,-202.671,-18.9649,-202.671	1/2:119:1,58,60:1:36:58,60:2046,2145:-336.63,-170.336,-155.814,-163.651,0,-148.527	1/1:111:0,111,0:0:0:111,0:3958,0:-356.364,-33.4143,0,-356.364,-33.4143,-356.364	1/1:104:0,104,0:0:0:104,0:3713,0:-334.371,-31.3071,0,-334.371,-31.3071,-334.371	1/2:99:0,47,52:0:0:47,52:1665,1857:-286.733,-151.101,-136.952,-135.987,0,-120.333	1/1:133:0,132,0:0:0:132,0:4725,0:-425.047,-39.736,0,-425.047,-39.736,-425.047	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:148:1,145,1:1:28:145,1:5181,28:-463.622,-41.4339,0,-461.708,-41.4369,-463.625	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/2:10:0,8,2:0:0:8,2:284,72:-29.3354,-6.1976,-3.78936,-23.4951,0,-22.8931	1/1:145:0,145,0:0:0:145,0:5177,0:-466.07,-43.6494,0,-466.07,-43.6494,-466.07	1/1:11:0,11,0:0:0:11,0:383,0:-34.8038,-3.31133,0,-34.8038,-3.3113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chr11	28570506	.	A	G	143215	PASS	AB=0.526415;ABP=25.4953;AC=141;AF=0.75;AN=188;AO=6692;CIGAR=1X;DP=8461;DPB=8461;DPRA=0;EPP=14525.8;EPPR=3835.66;GTI=3;LEN=1;MEANALT=1.04255;MQM=59.7449;MQMR=59.9694;NS=94;NUMALT=1;ODDS=0.794091;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=239546;QR=63040;RO=1765;RPL=6691;RPP=14525.8;RPPR=3835.66;RPR=1;RUN=1;SAF=0;SAP=14534.5;SAR=6692;SRF=0;SRP=3835.66;SRR=1765;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:116:0,116:0:0:116:4155:-374.124,-34.9195,0	1/1:93:0,93:0:0:93:3332:-300.089,-27.9958,0	0/1:192:85,107:85:3048:107:3844:-288.333,0,-216.562	0/1:154:66,88:66:2360:88:3160:-238.241,0,-166.3	0/1:67:32,35:32:1137:35:1256:-93.1763,0,-82.468	0/1:32:16,16:16:568:16:576:-42.5256,0,-41.8189	1/1:67:0,67:0:0:67:2400:-216.241,-20.169,0	1/1:158:0,158:0:0:158:5661:-509.256,-47.5627,0	0/1:124:60,64:60:2137:64:2275:-167.66,0,-155.268	1/1:88:0,88:0:0:88:3164:-284.59,-26.4906,0	0/1:66:31,35:31:1116:35:1260:-93.7883,0,-80.8837	1/1:126:0,126:0:0:126:4511:-406.093,-37.9298,0	0/1:83:38,45:38:1364:45:1612:-120.385,0,-98.0752	1/1:80:0,80:0:0:80:2860:-257.604,-24.0824,0	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0	1/1:69:0,69:0:0:69:2461:-221.737,-20.7711,0	0/1:38:22,16:22:788:16:572:-40.3292,0,-59.8057	0/1:41:22,19:22:788:19:684:-49.5399,0,-58.9026	1/1:23:0,23:0:0:23:828:-74.8278,-6.92369,0	0/1:82:24,58:24:845:58:2080:-162.768,0,-51.6826	0/1:192:77,115:77:2741:115:4105:-311.646,0,-189.12	0/1:101:54,47:54:1940:47:1688:-121.801,0,-144.416	0/1:95:39,56:39:1392:56:1988:-150.573,0,-96.9812	1/1:123:6,117:6:216:117:4192:-357.652,-17.2362,0	1/1:158:0,158:0:0:158:5633:-506.946,-47.5627,0	0/1:128:69,59:69:2480:59:2112:-151.805,0,-184.921	1/1:237:0,237:0:0:237:8465:-760.133,-71.3441,0	0/1:46:20,26:20:712:26:932:-70.3515,0,-50.5593	0/1:182:62,120:62:2178:120:4289:-331.398,0,-141.496	0/1:86:53,33:53:1877:33:1184:-80.9751,0,-143.318	1/1:111:0,111:0:0:111:3988:-359.047,-33.4143,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:38:0,38:0:0:38:1364:-123.056,-11.4391,0	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/1:12:3,9:3:108:9:324:-25.8935,0,-6.46281	1/1:27:0,27:0:0:27:968:-87.4292,-8.12781,0	1/1:207:0,207:0:0:207:7408:-666.705,-62.3132,0	1/1:124:1,123:1:36:123:4416:-394.003,-33.7294,0	0/1:55:21,34:21:748:34:1224:-93.8941,0,-51.0886	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:82:40,42:40:1421:42:1504:-110.961,0,-103.501	1/1:28:0,28:0:0:28:999:-90.2245,-8.42884,0	1/1:201:1,200:1:36:200:7110:-636.333,-56.9088,0	1/1:60:0,60:0:0:60:2156:-194.305,-18.0618,0	1/1:55:0,55:0:0:55:1976:-178.11,-16.5567,0	1/1:135:0,135:0:0:135:4828:-433.227,-40.6391,0	0/1:92:59,33:59:2120:33:1188:-79.5257,0,-163.374	1/1:88:0,88:0:0:88:3156:-284.264,-26.4906,0	1/1:109:0,108:0:0:108:3863:-347.498,-32.5112,0	0/1:65:28,37:28:993:37:1324:-99.7621,0,-70.1156	1/1:171:0,170:0:0:170:6085:-547.188,-51.1751,0	1/1:6:0,6:0:0:6:212:-19.4238,-1.80618,0	1/1:125:0,125:0:0:125:4484:-403.72,-37.6288,0	1/1:61:0,61:0:0:61:2184:-196.825,-18.3628,0	0/1:14:4,10:4:144:10:360:-28.5295,0,-9.0992	1/1:175:0,175:0:0:175:6260:-563.477,-52.6803,0	1/1:89:0,89:0:0:89:3190:-287.098,-26.7917,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:89:44,45:44:1580:45:1608:-118.218,0,-115.7	1/1:138:0,138:0:0:138:4948:-445.46,-41.5421,0	0/1:7:1,6:1:36:6:208:-16.9519,0,-1.49106	0/1:87:53,34:53:1889:34:1224:-84.2774,0,-144.097	1/1:213:0,212:0:0:212:7573:-681.225,-63.8184,0	0/1:63:25,38:25:896:38:1348:-102.644,0,-61.9936	0/1:70:31,39:31:1112:39:1398:-105.044,0,-79.3192	1/1:126:0,126:0:0:126:4520:-406.8,-37.9298,0	1/1:113:0,113:0:0:113:4026:-362.435,-34.0164,0	0/1:45:22,23:22:788:23:824:-60.9277,0,-57.6984	0/1:87:43,44:43:1548:44:1572:-115.582,0,-113.423	0/1:37:18,19:18:633:19:680:-50.3911,0,-46.157	0/1:33:11,22:11:396:22:784:-60.9444,0,-26.0488	1/1:202:0,202:0:0:202:7244:-651.976,-60.8081,0	0/1:102:52,50:52:1853:50:1794:-131.032,0,-136.343	1/1:190:0,190:0:0:190:6808:-612.711,-57.1957,0	0/1:111:51,60:51:1836:60:2150:-160.345,0,-132.106	0/1:95:52,43:52:1864:43:1540:-110.279,0,-139.442	0/1:47:23,24:23:805:24:864:-63.9342,0,-58.6191	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/1:65:33,32:33:1188:32:1144:-83.7026,0,-87.6616	1/1:105:0,105:0:0:105:3736:-336.395,-31.6082,0	0/1:212:107,105:107:3810:105:3772:-275.855,0,-279.277	0/1:57:28,29:28:995:29:1040:-76.7557,0,-72.7053	0/1:83:44,39:44:1569:39:1396:-100.909,0,-116.514	1/1:39:0,39:0:0:39:1404:-126.655,-11.7402,0	1/1:149:0,148:0:0:148:5288:-475.685,-44.5524,0	1/1:27:0,27:0:0:27:959:-86.6172,-8.12781,0	0/1:73:30,43:30:1076:43:1544:-117.27,0,-75.1777	0/1:75:35,40:35:1260:40:1436:-106.952,0,-91.1282	0/1:33:15,18:15:540:18:644:-48.3566,0,-39.0025	0/1:113:59,54:59:2097:54:1936:-140.467,0,-154.982	0/1:80:50,30:50:1796:30:1076:-73.0691,0,-137.84	1/1:91:0,91:0:0:91:3256:-293.261,-27.3937,0	1/1:101:0,101:0:0:101:3604:-324.552,-30.404,0
chr11	28570632	.	G	A	69666.5	PASS	AB=0.494553;ABP=3.60166;AC=138;AF=0.734043;AN=188;AO=3365;CIGAR=1X;DP=4548;DPB=4548;DPRA=8.13978;EPP=7266.65;EPPR=2558.84;GTI=1;LEN=1;MEANALT=1.02151;MQM=59.9941;MQMR=59.9441;NS=94;NUMALT=1;ODDS=0.0180289;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119503;QR=42162;RO=1181;RPL=3360;RPP=7266.65;RPPR=2558.84;RPR=5;RUN=1;SAF=3365;SAP=7310.01;SAR=0;SRF=1181;SRP=2567.52;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:12:0,12:0:0:12:420:-38.134,-3.61236,0	1/1:32:0,32:0:0:32:1127:-101.737,-9.63296,0	0/1:56:28,28:28:996:28:970:-70.75,0,-73.0972	0/1:87:38,49:38:1356:49:1737:-130.423,0,-96.1509	0/1:12:5,7:5:172:7:252:-19.4166,0,-12.2056	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:32:0,32:0:0:32:1127:-101.737,-9.63296,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	0/1:37:19,18:19:680:18:636:-46.4294,0,-50.3911	1/1:47:0,47:0:0:47:1671:-150.677,-14.1484,0	0/1:70:31,39:31:1116:39:1374:-102.886,0,-79.6796	1/1:88:0,88:0:0:88:3123:-281.298,-26.4906,0	0/1:58:27,31:27:964:31:1104:-82.2109,0,-69.6171	1/1:76:0,76:0:0:76:2712:-244.324,-22.8783,0	1/1:61:1,60:1:36:60:2139:-189.179,-14.7646,0	1/1:51:0,51:0:0:51:1819:-163.991,-15.3525,0	0/1:39:12,27:12:428:27:956:-74.6156,0,-27.1186	0/1:34:19,15:19:680:15:528:-37.6163,0,-51.2941	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:67:36,30:36:1284:30:1061:-75.5718,0,-95.6357	0/1:33:24,9:24:860:9:316:-18.8449,0,-67.7878	0/1:27:16,11:16:572:11:387:-27.0381,0,-43.6856	0/1:40:18,22:18:648:22:779:-58.3909,0,-46.6107	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:119:50,69:50:1783:69:2476:-187.271,0,-124.929	1/1:60:0,60:0:0:60:2140:-192.868,-18.0618,0	0/1:33:16,17:16:572:17:590:-43.4902,0,-41.8794	0/1:50:31,19:31:1087:19:678:-46.2972,0,-83.0869	0/1:42:19,23:19:680:23:809:-60.485,0,-48.8859	1/1:43:2,41:2:72:41:1447:-123.688,-6.10757,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:159:0,159:0:0:159:5634:-507.186,-47.8638,0	1/1:44:0,44:0:0:44:1549:-139.7,-13.2453,0	0/1:54:30,24:30:1071:24:860:-61.4662,0,-80.446	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:46:23,23:23:828:23:809:-59.2809,0,-60.9967	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:53:0,53:0:0:53:1849:-166.688,-15.9546,0	1/1:39:1,38:1:36:38:1345:-117.751,-8.1419,0	1/1:56:0,56:0:0:56:1992:-179.554,-16.8577,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	0/1:36:15,21:15:514:21:748:-56.8082,0,-35.7467	1/1:68:0,68:0:0:68:2414:-217.516,-20.47,0	1/1:53:0,53:0:0:53:1888:-170.069,-15.9546,0	0/1:84:41,43:41:1468:43:1528:-112.527,0,-107.13	1/1:95:0,95:0:0:95:3365:-303.067,-28.5979,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:34:0,34:0:0:34:1212:-109.386,-10.235,0	1/1:46:0,46:0:0:46:1643:-148.158,-13.8474,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	1/1:65:0,65:0:0:65:2282:-205.639,-19.567,0	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:42:16,26:16:576:26:923:-70.7435,0,-39.5317	1/1:102:2,100:2:72:100:3583:-315.839,-23.8683,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:124:53,71:53:1896:71:2540:-191.523,0,-133.59	1/1:105:1,104:1:36:104:3689:-328.616,-28.0099,0	0/1:36:14,22:14:500:22:784:-60.0468,0,-34.4991	0/1:32:19,13:19:672:13:468:-32.8267,0,-51.1739	1/1:70:0,70:0:0:70:2492:-224.534,-21.0721,0	1/1:50:4,46:4:144:46:1616:-132.412,-1.73788,0	0/1:34:18,16:18:636:16:568:-41.2168,0,-47.333	0/1:29:13,16:13:460:16:564:-42.3604,0,-33.0055	0/1:35:19,16:19:676:16:553:-39.5583,0,-50.6319	0/1:25:18,7:18:648:7:252:-15.5032,0,-51.1261	1/1:72:0,72:0:0:72:2540:-228.852,-21.6742,0	0/1:73:44,29:44:1580:29:1020:-70.1345,0,-120.516	1/1:57:1,56:1:36:56:2004:-177.035,-13.5604,0	0/1:93:53,40:53:1892:40:1416:-99.7416,0,-142.562	0/1:33:22,11:22:784:11:392:-25.6861,0,-60.9499	0/1:43:26,17:26:924:17:604:-41.7463,0,-70.5334	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:73:33,40:33:1184:40:1420:-106.122,0,-84.8931	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:81:35,46:35:1251:46:1635:-123.055,0,-88.5108	0/1:60:28,31:28:991:31:1108:-81.9105,0,-70.8919	0/1:46:18,28:18:648:28:1008:-77.189,0,-44.8045	1/1:48:0,48:0:0:48:1696:-152.924,-14.4494,0	1/1:123:3,120:3:108:120:4280:-375.304,-26.9515,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	0/1:73:38,35:38:1355:35:1213:-87.4952,0,-100.275	0/1:66:39,27:39:1404:27:956:-66.4864,0,-106.579	0/1:51:22,29:22:784:29:1040:-78.5618,0,-55.5314	0/1:110:68,42:68:2418:42:1504:-102.541,0,-184.762	0/1:67:43,24:43:1540:24:856:-57.1921,0,-118.724	1/1:65:0,65:0:0:65:2275:-205.009,-19.567,0	1/1:100:1,99:1:36:99:3548:-315.93,-26.5047,0
chr11	28582421	.	G	A	28585.4	PASS	AB=0.4686;ABP=33.4201;AC=48;AF=0.255319;AN=188;AO=1675;CIGAR=1X;DP=7258;DPB=7258;DPRA=1.00885;EPP=3384.32;EPPR=11424.3;GTI=1;LEN=1;MEANALT=1.0566;MQM=59.9815;MQMR=59.9839;NS=94;NUMALT=1;ODDS=0.993133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60040;QR=199398;RO=5579;RPL=30;RPP=3384.32;RPPR=11424.3;RPR=1645;RUN=1;SAF=1675;SAP=3640.23;SAR=0;SRF=5579;SRP=12117.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:37,0:37:1305:0:0:0,-11.1381,-117.749	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:65:27,38:27:960:38:1368:-103.854,0,-67.1493	0/1:103:52,51:52:1868:51:1824:-133.435,0,-137.393	0/1:34:17,17:17:612:17:612:-45.1784,0,-45.1784	0/1:53:35,18:35:1256:18:648:-42.6973,0,-97.3907	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/0:164:164,0:164:5861:0:0:0,-49.3689,-527.6	0/1:72:42,30:42:1504:30:1057:-73.7648,0,-113.98	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:69:36,33:36:1284:33:1188:-86.4575,0,-95.0923	0/0:82:82,0:82:2893:0:0:0,-24.6845,-260.604	0/1:69:40,29:40:1421:29:1044:-73.5037,0,-107.414	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:76:76,0:76:2711:0:0:0,-22.8783,-244.234	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/1:71:33,38:33:1188:38:1358:-101.147,0,-85.8555	0/1:46:26,20:26:932:20:720:-51.2814,0,-70.3515	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/1:72:32,40:32:1148:40:1436:-107.864,0,-81.9557	0/1:345:198,147:198:7088:147:5266:-370.164,0,-534.102	0/1:40:20,20:20:716:20:716:-52.7265,0,-52.7265	0/1:52:24,28:24:864:28:993:-74.0289,0,-62.429	0/0:76:71,4:71:2531:4:144:0,-9.50386,-214.755	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.757	0/1:252:142,110:142:5100:110:3940:-278.932,0,-383.282	0/0:122:121,1:121:4335:1:36:0,-33.1274,-386.726	0/1:50:25,25:25:900:25:900:-66.2695,0,-66.2695	0/1:150:101,48:101:3620:48:1728:-110.592,0,-280.792	0/1:110:55,55:55:1968:55:1980:-145.361,0,-144.282	0/0:85:84,1:84:3016:1:36:0,-21.9893,-268.072	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:206:206,0:206:7384:0:0:0,-62.0122,-664.605	0/0:148:148,0:148:5287:0:0:0,-44.5524,-475.966	0/1:98:49,49:49:1756:49:1764:-129.543,0,-128.823	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:86:52,34:52:1856:34:1220:-84.2182,0,-141.431	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:98:98,0:98:3503:0:0:0,-29.5009,-315.48	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:104:50,54:50:1773:54:1929:-142.578,0,-128.544	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:88:52,36:52:1868:36:1281:-89.1006,0,-141.909	0/0:92:92,0:92:3272:0:0:0,-27.6948,-294.699	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:112:112,0:112:4010:0:0:0,-33.7154,-361.088	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:21:10,11:10:360:11:388:-28.9357,0,-26.4227	0/0:123:123,0:123:4390:0:0:0,-37.0267,-395.273	0/0:57:57,0:57:1999:0:0:0,-17.1587,-180.178	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:24:11,13:11:387:13:460:-34.5107,0,-27.9412	0/0:157:157,0:157:5624:0:0:0,-47.2617,-506.281	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:126:71,55:71:2548:55:1976:-140.185,0,-191.641	0/0:115:112,3:112:4012:3:108:0,-24.5433,-351.194	0/1:19:10,9:10:360:9:320:-23.4228,0,-27.0247	0/1:35:25,10:25:888:10:360:-22.2083,0,-69.4751	0/0:159:156,2:156:5553:2:72:0,-41.0858,-493.06	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:42:18,24:18:648:24:860:-65.0786,0,-46.0086	0/1:43:24,19:24:849:19:676:-48.2231,0,-63.7835	0/1:92:42,50:42:1500:50:1792:-133.868,0,-107.6	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	0/0:88:88,0:88:3110:0:0:0,-26.4906,-280.126	0/1:67:39,28:39:1396:28:1004:-70.5065,0,-105.77	0/0:128:128,0:128:4549:0:0:0,-38.5318,-409.088	0/1:86:43,43:43:1532:43:1548:-113.724,0,-112.285	0/1:47:25,22:25:881:22:784:-56.7355,0,-65.4575	0/1:80:38,42:38:1338:42:1504:-111.572,0,-96.6331	0/1:15:6,9:6:216:9:309:-23.6253,0,-15.2751	0/1:79:44,35:44:1580:35:1254:-89.3836,0,-118.71	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/1:147:80,67:80:2872:67:2397:-171.735,0,-214.465	0/1:99:47,52:47:1676:52:1872:-138.929,0,-121.325	0/1:41:21,20:21:756:20:720:-52.7865,0,-56.025	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:174:174,0:174:6236:0:0:0,-52.3792,-561.335	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/1:88:42,46:42:1504:46:1656:-122.838,0,-109.164	0/1:70:41,29:41:1458:29:1044:-73.2027,0,-110.442	0/1:38:18,20:18:648:20:716:-53.3286,0,-47.2127	0/1:118:60,58:60:2144:58:2088:-152.668,0,-157.706	0/1:103:38,65:38:1368:65:2332:-179.133,0,-92.4147	0/0:84:83,0:83:2927:0:0:0,-24.9855,-263.302	0/0:119:119,0:119:4237:0:0:0,-35.8226,-381.51
chr11	28585881	.	C	T	12640.5	PASS	AB=0.455366;ABP=56.7051;AC=49;AF=0.260638;AN=188;AO=1421;CIGAR=1X;DP=6369;DPB=6369;DPRA=0.939712;EPP=3088.67;EPPR=10740.9;GTI=4;LEN=1;MEANALT=1.03922;MQM=28.5961;MQMR=50.9984;NS=94;NUMALT=1;ODDS=1.38121;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51032;QR=177087;RO=4945;RPL=0;RPP=3088.67;RPPR=10740.9;RPR=1421;RUN=1;SAF=1421;SAP=3088.67;SAR=0;SRF=4945;SRP=10740.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1489:0:0:0,-12.6433,-132.433	0/0:87:87,0:87:3124:0:0:0,-26.1896,-279.022	0/1:101:55,46:55:1980:46:1656:-75.7823,0,-145.706	0/1:131:66,65:66:2364:65:2332:-129.999,0,-172.979	0/1:56:29,27:29:1028:27:972:-49.9057,0,-75.4533	0/1:18:8,10:8:288:10:360:-18.0272,0,-20.6675	0/0:69:69,0:69:2434:0:0:0,-20.7711,-217.588	0/0:88:88,0:88:3132:0:0:0,-26.4906,-278.097	0/1:87:38,49:38:1348:49:1760:-86.5208,0,-94.6185	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.3	0/1:49:29,20:29:1036:20:716:-37.565,0,-77.6667	0/0:119:119,0:119:4276:0:0:0,-35.8226,-380.201	0/1:75:45,30:45:1620:30:1080:-46.5964,0,-121.893	0/0:75:75,0:75:2692:0:0:0,-22.5772,-241.478	0/0:85:85,0:85:3056:0:0:0,-25.5875,-274.129	0/0:78:78,0:78:2792:0:0:0,-23.4803,-250.364	0/1:40:22,18:22:792:18:648:-29.6657,0,-58.6902	0/1:39:27,12:27:972:12:432:-15.9815,0,-75.1559	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.2484	0/1:156:84,72:84:2996:72:2572:-140.76,0,-222.115	0/1:99:54,45:54:1940:45:1620:-81.1277,0,-142.646	0/1:42:20,22:20:716:22:792:-47.7302,0,-52.0521	0/1:111:58,53:58:2072:53:1900:-104.697,0,-152.568	0/0:56:54,2:54:1940:2:68:0,-11.7364,-168.283	0/0:68:68,0:68:2432:0:0:0,-20.47,-216.739	0/1:142:80,62:80:2852:62:2224:-125.977,0,-213.789	0/0:156:156,0:156:5600:0:0:0,-46.9607,-500.953	0/1:26:17,9:17:612:9:324:-14.6101,0,-46.8262	0/1:186:103,83:103:3700:83:2976:-170.424,0,-276.031	0/1:45:24,21:24:860:21:756:-38.4415,0,-63.875	0/0:75:75,0:75:2680:0:0:0,-22.5772,-240.827	0/1:5:2,3:2:72:3:108:-6.15622,0,-5.30917	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.853	0/1:4:1,3:1:36:3:108:-5.96026,0,-2.14203	1/1:3:0,3:0:0:3:108:-7.16438,-0.90309,0	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.9504	0/0:199:199,0:199:7124:0:0:0,-59.905,-640.105	0/0:46:46,0:46:1632:0:0:0,-13.8474,-146.615	0/1:49:18,31:18:648:31:1112:-56.8429,0,-43.2001	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58648	0/1:106:66,39:66:2360:39:1404:-64.3731,0,-179.826	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.056	0/0:103:103,0:103:3684:0:0:0,-31.0061,-329.995	0/0:61:61,0:61:2188:0:0:0,-18.3628,-196.559	0/0:68:68,0:68:2432:0:0:0,-20.47,-218.361	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.462	0/1:101:61,40:61:2188:40:1440:-61.7982,0,-164.833	0/0:101:101,0:101:3608:0:0:0,-30.404,-323.739	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.328	0/1:58:28,30:28:1004:30:1080:-61.2052,0,-72.7858	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.236	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.1554	0/0:94:94,0:94:3369:0:0:0,-28.2968,-301.047	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.161	0/1:4:3,1:3:108:1:36:-1.35459,0,-8.75256	0/0:94:94,0:94:3368:0:0:0,-28.2968,-301.949	0/0:45:44,0:44:1576:0:0:0,-13.2453,-141.346	0/1:6:4,2:4:144:2:72:-3.85326,0,-11.4937	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2375	0/1:42:21,21:21:748:21:756:-39.184,0,-54.7789	0/0:97:97,0:97:3484:0:0:0,-29.1999,-313.152	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59142	0/1:59:29,30:29:1040:30:1080:-64.4554,0,-75.8971	0/0:77:76,1:76:2728:1:36:0,-20.2765,-242.174	0/1:46:25,20:25:900:20:716:-35.4128,0,-66.9554	0/1:48:24,24:24:860:24:864:-48.5405,0,-63.1113	0/0:101:101,0:101:3601:0:0:0,-30.404,-322.925	0/0:118:116,2:116:4149:2:72:0,-30.0063,-367.097	0/1:47:25,22:25:900:22:792:-40.302,0,-66.86	0/1:40:23,17:23:820:17:608:-27.3123,0,-61.5645	0/1:59:22,37:22:792:37:1316:-81.2151,0,-53.6653	0/1:13:8,5:8:288:5:180:-9.43933,0,-22.304	0/0:65:65,0:65:2328:0:0:0,-19.5669,-208.166	0/1:76:38,38:38:1352:38:1368:-64.8854,0,-98.3033	0/0:101:101,0:101:3620:0:0:0,-30.404,-323.804	0/1:94:58,36:58:2072:36:1296:-65.8927,0,-157.896	0/1:80:41,39:41:1472:39:1400:-65.4323,0,-107.493	0/1:92:60,32:60:2144:32:1148:-45.7166,0,-163.625	0/1:5:3,2:3:108:2:72:-3.35639,0,-8.19501	0/1:60:32,28:32:1152:28:1008:-51.0037,0,-85.5758	0/0:75:75,0:75:2692:0:0:0,-22.5772,-239.387	0/1:140:92,48:92:3296:48:1724:-83.4417,0,-253.659	0/1:63:32,31:32:1140:31:1112:-61.8149,0,-83.6711	0/1:79:46,33:46:1648:33:1180:-62.0923,0,-124.532	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.356	0/0:136:136,0:136:4877:0:0:0,-40.9401,-437.781	0/0:30:30,0:30:1080:0:0:0,-9.0309,-96.7927	0/1:68:29,39:29:1044:39:1404:-69.4293,0,-73.1539	0/1:74:48,26:48:1728:26:936:-37.686,0,-132.158	0/1:37:18,19:18:644:19:680:-35.8507,0,-46.8073	0/1:67:44,23:44:1576:23:828:-36.744,0,-121.378	0/1:78:28,50:28:996:50:1800:-106.744,0,-66.2497	0/0:67:67,0:67:2396:0:0:0,-20.169,-214.753	0/0:128:128,0:128:4600:0:0:0,-38.5318,-412.396
chr11	28585909	.	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chr11	28590280	.	CGCT	CGCG,TGCG	183260	PASS	AB=0.506505,0.486092;ABP=4.64889,10.4999;AC=138,50;AF=0.734043,0.265957;AN=188;AO=6296,2186;CIGAR=3M1X,1X2M1X;DP=8530;DPB=8530;DPRA=10.1804,1.08331;EPP=13320.8,4569.2;EPPR=11.6962;GTI=2;LEN=1,4;MEANALT=1.97849,2.48148;MQM=59.9921,59.893;MQMR=60;NS=94;NUMALT=2;ODDS=5.10576;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=224090,76992;QR=144;RO=4;RPL=41,21;RPP=13320.8,4569.2;RPPR=11.6962;RPR=6255,2165;RUN=1,1;SAF=6296,2186;SAP=13674.6,4749.85;SAR=0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42,0:0:0:42,0:1492,0:-134.575,-12.6433,0,-134.575,-12.6433,-134.575	1/1:55:0,55,0:0:0:55,0:1964,0:-177.035,-16.5567,0,-177.035,-16.5567,-177.035	1/2:79:0,42,37:0:0:42,37:1500,1314:-229.718,-107.422,-94.779,-122.651,0,-111.513	1/2:184:0,108,71:0:0:108,71:3860,2502:-518.451,-203.72,-171.209,-314.746,0,-293.373	1/2:67:0,37,30:0:0:37,30:1319,1075:-195.512,-88.0322,-76.8941,-107.837,0,-98.8064	1/2:51:0,26,25:0:0:26,25:932,886:-148.548,-72.5324,-64.7056,-76.3721,0,-68.8463	1/1:82:0,81,0:0:0:81,0:2880,0:-259.076,-24.3834,0,-259.076,-24.3834,-259.076	1/1:109:0,106,2:0:0:106,2:3760,72:-338.247,-31.9092,0,-332.372,-26.0211,-331.77	1/2:104:0,61,43:0:0:61,43:2179,1517:-301.528,-123.869,-105.507,-178.013,0,-165.068	1/1:117:0,117,0:0:0:117,0:4174,0:-375.842,-35.2205,0,-375.842,-35.2205,-375.842	1/2:95:0,51,44:0:0:51,44:1819,1545:-274.378,-126.094,-110.741,-148.638,0,-135.393	1/1:88:0,88,0:0:0:88,0:3120,0:-281.026,-26.4906,0,-281.026,-26.4906,-281.026	1/2:82:0,49,32:0:0:49,32:1743,1138:-234.781,-92.7339,-77.9834,-142.044,0,-132.411	1/1:115:0,115,0:0:0:115,0:4101,0:-369.275,-34.6185,0,-369.275,-34.6185,-369.275	1/1:82:0,82,0:0:0:82,0:2944,0:-265.193,-24.6845,0,-265.193,-24.6845,-265.193	1/1:83:0,83,0:0:0:83,0:2954,0:-266.092,-24.9855,0,-266.092,-24.9855,-266.092	1/2:80:0,34,44:0:0:34,44:1205,1553:-224.618,-126.453,-116.218,-98.1597,0,-84.9144	1/2:35:0,20,15:0:0:20,15:720,521:-101.457,-42.7015,-36.6809,-59.1082,0,-54.5927	1/1:38:0,37,0:0:0:37,0:1320,0:-118.742,-11.1381,0,-118.742,-11.1381,-118.742	1/1:101:0,101,0:0:0:101,0:3612,0:-325.286,-30.404,0,-325.286,-30.404,-325.286	1/2:209:0,97,112:0:0:97,112:3476,3907:-601.609,-318.111,-288.911,-283.851,0,-250.136	1/2:48:0,14,34:0:0:14,34:504,1162:-135.775,-94.6455,-90.431,-41.4837,0,-31.2487	1/2:142:0,64,75:0:0:64,75:2279,2638:-400.395,-214.643,-195.378,-185.746,0,-163.169	1/2:83:0,74,8:0:0:74,8:2634,288:-238.148,-23.4993,-1.22312,-214.648,0,-212.24	1/1:54:0,54,0:0:0:54,0:1931,0:-174.066,-16.2556,0,-174.066,-16.2556,-174.066	1/2:197:0,94,101:0:0:94,101:3336,3526:-558.594,-286.786,-258.489,-271.8,0,-241.396	1/1:220:0,219,0:0:0:219,0:7842,0:-705.556,-65.9256,0,-705.556,-65.9256,-705.556	1/2:29:0,14,14:0:0:14,14:500,492:-80.8059,-40.0387,-35.8243,-40.7622,0,-36.5478	1/2:267:1,126,137:1:36:126,137:4487,4835:-756.184,-390.768,-355.776,-362.774,0,-324.47	1/2:151:0,74,76:0:0:74,76:2647,2658:-432.129,-216.283,-194.007,-215.967,0,-193.089	1/1:116:0,113,3:0:0:113,3:4039,107:-363.341,-34.0164,0,-354.619,-24.9373,-353.716	1/2:19:0,11,8:0:0:11,8:396,281:-55.5383,-23.2217,-19.9103,-32.6714,0,-30.2632	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:5:0,3,2:0:0:3,2:108,71:-14.9552,-6.14,-5.23691,-9.17208,0,-8.57002	1/2:8:0,5,3:0:0:5,3:176,108:-23.4951,-9.17208,-7.66693,-14.6799,0,-13.7768	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:212:0,211,0:0:0:211,0:7496,0:-674.455,-63.5173,0,-674.455,-63.5173,-674.455	1/1:79:0,77,0:0:0:77,0:2731,0:-245.674,-23.1793,0,-245.674,-23.1793,-245.674	1/2:51:0,28,22:0:0:28,22:980,787:-143.9,-64.1724,-55.7436,-79.7218,0,-73.0992	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:108:0,60,48:0:0:60,48:2131,1707:-313.106,-139.465,-121.403,-173.996,0,-159.547	1/1:40:0,40,0:0:0:40,0:1423,0:-128.367,-12.0412,0,-128.367,-12.0412,-128.367	1/1:120:0,120,0:0:0:120,0:4267,0:-384.209,-36.1236,0,-384.209,-36.1236,-384.209	1/1:82:0,82,0:0:0:82,0:2903,0:-261.505,-24.6845,0,-261.505,-24.6845,-261.505	1/1:61:0,61,0:0:0:61,0:2184,0:-196.826,-18.3628,0,-196.826,-18.3628,-196.826	1/1:86:0,86,0:0:0:86,0:3046,0:-274.37,-25.8886,0,-274.37,-25.8886,-274.37	1/2:80:0,40,38:0:0:40,38:1432,1342:-226.097,-109.315,-97.2733,-116.834,0,-105.395	1/1:153:0,153,0:0:0:153,0:5468,0:-492.249,-46.0576,0,-492.249,-46.0576,-492.249	1/1:80:0,80,0:0:0:80,0:2843,0:-256.109,-24.0824,0,-256.109,-24.0824,-256.109	1/2:117:0,47,70:0:0:47,70:1684,2491:-340.713,-203.371,-189.223,-137.699,0,-116.627	1/1:143:0,143,0:0:0:143,0:5088,0:-458.065,-43.0473,0,-458.065,-43.0473,-458.065	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/1:68:0,68,0:0:0:68,0:2419,0:-217.966,-20.47,0,-217.966,-20.47,-217.966	1/1:58:0,57,0:0:0:57,0:2024,0:-182.073,-17.1587,0,-182.073,-17.1587,-182.073	1/2:11:0,6,5:0:0:6,5:212,180:-32.3087,-15.0469,-13.2407,-17.6186,0,-16.1135	1/1:115:0,115,0:0:0:115,0:4106,0:-369.724,-34.6185,0,-369.724,-34.6185,-369.724	1/1:51:0,50,0:0:0:50,0:1783,0: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chr11	28665096	.	G	A	141530	PASS	AB=0.496742;ABP=3.43478;AC=139;AF=0.739362;AN=188;AO=6732;CIGAR=1X;DP=9054;DPB=9054;DPRA=0;EPP=14621.4;EPPR=5040.83;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9847;MQMR=59.9974;NS=94;NUMALT=1;ODDS=0.0612481;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=240864;QR=83110;RO=2320;RPL=6732;RPP=14621.4;RPPR=5040.83;RPR=0;RUN=1;SAF=0;SAP=14621.4;SAR=6732;SRF=0;SRP=5040.83;SRR=2320;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:58:0,58:0:0:58:2064:-186.031,-17.4597,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:192:100,92:100:3584:92:3292:-238.701,0,-264.969	0/1:203:101,102:101:3616:102:3626:-265.435,0,-264.537	0/1:66:28,38:28:1004:38:1368:-103.553,0,-70.8079	0/1:13:3,10:3:104:10:360:-28.8309,0,-5.78942	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	1/1:126:0,126:0:0:126:4487:-403.996,-37.9298,0	0/1:99:31,68:31:1104:68:2448:-190.772,0,-69.8687	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	0/1:65:23,42:23:828:42:1504:-116.088,0,-55.2772	1/1:128:0,128:0:0:128:4573:-411.734,-38.5318,0	0/1:101:48,53:48:1712:53:1904:-141.234,0,-123.962	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	1/1:84:0,84:0:0:84:3024:-272.389,-25.2865,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:54:34,20:34:1220:20:711:-48.0607,0,-93.8512	0/1:33:14,19:14:504:19:680:-51.5948,0,-35.7641	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:327:0,327:0:0:327:11680:-1051.06,-98.4368,0	0/1:149:69,80:69:2456:80:2856:-212.425,0,-176.442	1/1:159:0,159:0:0:159:5704:-513.476,-47.8638,0	0/1:131:66,65:66:2372:65:2302:-168.003,0,-174.303	0/1:51:8,43:8:288:43:1540:-123.541,0,-10.9149	1/1:68:0,68:0:0:68:2429:-218.865,-20.47,0	0/1:230:113,117:113:4049:117:4196:-308.583,0,-295.358	0/1:306:171,134:171:6128:134:4801:-340.066,0,-459.445	0/1:38:14,24:14:504:24:864:-66.643,0,-34.259	0/1:303:168,135:168:6028:135:4832:-343.733,0,-451.41	0/1:103:66,37:66:2368:37:1330:-88.9963,0,-182.372	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:19:1,18:1:36:18:648:-55.0536,-2.1213,0	1/1:206:0,206:0:0:206:7369:-663.256,-62.0122,0	1/1:129:0,129:0:0:129:4613:-415.332,-38.8329,0	0/1:67:41,26:41:1458:26:936:-64.3905,0,-111.345	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:108:58,50:58:2076:50:1777:-127.699,0,-154.599	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	1/1:133:0,133:0:0:133:4709:-423.97,-40.037,0	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	1/1:113:0,112:0:0:112:4008:-360.642,-33.7154,0	0/1:112:45,67:45:1596:67:2402:-182.719,0,-110.215	1/1:134:0,134:0:0:134:4808:-432.874,-40.338,0	1/1:120:0,120:0:0:120:4297:-386.905,-36.1236,0	0/1:97:58,39:58:2076:39:1400:-97.0993,0,-157.911	1/1:182:0,182:0:0:182:6489:-584.095,-54.7875,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:145:0,145:0:0:145:5196:-467.779,-43.6494,0	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	0/1:14:2,12:2:72:12:432:-35.0068,0,-2.6223	1/1:147:2,145:2:72:145:5188:-460.223,-37.4147,0	1/1:66:0,66:0:0:66:2352:-211.939,-19.868,0	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:70:26,44:26:924:44:1576:-121.059,0,-62.4056	1/1:98:0,98:0:0:98:3528:-317.728,-29.5009,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:154:85,69:85:3040:69:2460:-175.293,0,-227.472	1/1:202:0,202:0:0:202:7241:-651.74,-60.8081,0	0/1:52:28,24:28:1008:24:864:-62.429,0,-75.3828	0/1:80:35,45:35:1252:45:1606:-120.748,0,-88.9027	1/1:147:0,147:0:0:147:5249:-472.547,-44.2514,0	1/1:164:0,164:0:0:164:5819:-523.822,-49.3689,0	0/1:40:18,22:18:644:22:770:-57.578,0,-46.2494	0/1:89:34,55:34:1220:55:1972:-150.963,0,-83.3151	0/1:46:23,23:23:824:23:828:-60.9967,0,-60.6359	0/1:24:7,17:7:252:17:612:-48.1887,0,-15.8042	1/1:102:0,102:0:0:102:3643:-328.075,-30.7051,0	0/1:95:50,45:50:1792:45:1608:-116.412,0,-132.965	1/1:169:0,169:0:0:169:6068:-546.22,-50.8741,0	0/1:185:92,93:92:3304:93:3328:-244.047,0,-241.887	0/1:128:76,52:76:2716:52:1868:-129.867,0,-206.152	0/1:90:46,44:46:1652:44:1576:-115.039,0,-121.876	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/1:94:39,55:39:1404:55:1971:-149.368,0,-98.3625	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	0/1:235:147,88:147:5268:88:3156:-213.523,0,-403.509	0/1:65:19,46:19:680:46:1648:-129.042,0,-41.9622	0/1:96:48,48:48:1724:48:1724:-126.547,0,-126.547	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:160:1,159:1:36:159:5683:-507.99,-44.5665,0	1/1:19:0,19:0:0:19:669:-60.5339,-5.71957,0	0/1:92:44,48:44:1580:48:1720:-127.391,0,-114.797	0/1:90:57,33:57:2044:33:1188:-80.1359,0,-157.139	0/1:60:30,30:30:1076:30:1080:-79.3216,0,-79.0911	0/1:113:49,64:49:1756:64:2292:-172.525,0,-124.308	0/1:94:59,35:59:2111:35:1256:-85.0485,0,-161.961	1/1:68:0,68:0:0:68:2410:-217.154,-20.47,0	1/1:104:0,104:0:0:104:3729:-335.808,-31.3071,0
chr11	28695231	.	C	G	138429	PASS	AB=0.53589;ABP=43.8483;AC=141;AF=0.758065;AN=186;AO=6405;CIGAR=1X;DP=8121;DPB=8121;DPRA=0;EPP=13429.1;EPPR=3647.07;GTI=1;LEN=1;MEANALT=1.06452;MQM=59.9838;MQMR=60;NS=93;NUMALT=1;ODDS=5.30197;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228230;QR=61131;RO=1710;RPL=6347;RPP=13412.1;RPPR=3647.07;RPR=58;RUN=1;SAF=2;SAP=13893.9;SAR=6403;SRF=0;SRP=3716.23;SRR=1710;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1622:-146.267,-13.8474,0	1/1:69:1,68:1:36:68:2431:-215.447,-17.1728,0	0/1:131:55,76:55:1964:76:2702:-203.988,0,-137.6	0/1:155:65,90:65:2324:90:3212:-242.642,0,-162.761	0/1:35:14,21:14:504:21:752:-57.4702,0,-35.162	0/1:38:14,24:14:485:24:848:-65.2005,0,-32.5378	1/1:89:0,89:0:0:89:3172:-285.706,-26.7917,0	1/1:130:2,128:2:72:128:4517:-399.863,-32.2972,0	0/1:66:25,40:25:884:40:1428:-108.891,0,-59.9518	1/1:91:0,91:0:0:91:3242:-292.002,-27.3937,0	0/1:66:31,35:31:1116:35:1252:-93.1171,0,-80.8837	1/1:132:0,132:0:0:132:4723:-425.229,-39.736,0	0/1:86:46,40:46:1644:40:1429:-103.018,0,-122.36	1/1:88:1,87:1:36:87:3112:-276.709,-22.8924,0	1/1:69:0,69:0:0:69:2467:-222.283,-20.7711,0	1/1:72:0,72:0:0:72:2579:-232.359,-21.6742,0	0/1:40:21,19:21:752:19:684:-49.8491,0,-55.9651	0/1:31:15,16:15:536:16:572:-42.4815,0,-39.2429	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:177:2,175:2:72:175:6243:-555.131,-46.4456,0	0/1:125:54,71:54:1927:71:2532:-190.503,0,-136.077	1/1:78:0,78:0:0:78:2784:-250.801,-23.4803,0	0/1:86:38,48:38:1349:48:1712:-128.477,0,-95.8197	1/1:53:2,51:2:72:51:1794:-154.904,-9.11787,0	1/1:94:1,93:1:36:93:3340:-297.218,-24.6985,0	0/1:160:80,80:80:2868:80:2847:-208.304,0,-210.192	0/1:187:95,92:95:3383:92:3280:-239.128,0,-248.394	0/1:35:12,23:12:428:23:828:-64.3081,0,-28.3228	0/1:198:101,97:101:3612:97:3476:-253.447,0,-265.682	0/1:93:38,55:38:1356:55:1964:-149.039,0,-94.3447	1/1:100:0,100:0:0:100:3573:-321.777,-30.103,0	0/1:8:2,6:2:64:6:216:-17.3823,0,-3.67045	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-17.3176	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:187:0,187:0:0:187:6659:-599.389,-56.2926,0	1/1:141:0,140:0:0:140:4962:-446.374,-42.1442,0	0/1:63:31,32:31:1104:32:1144:-84.3046,0,-80.7057	.:.:.:.:.:.:.:.	0/1:73:30,43:30:1065:43:1535:-116.467,0,-74.1846	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:140:0,139:0:0:139:4936:-444.032,-41.8432,0	1/1:58:0,58:0:0:58:2056:-185.309,-17.4597,0	1/1:65:0,65:0:0:65:2253:-203.031,-19.567,0	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0	0/1:102:52,50:52:1853:50:1796:-131.217,0,-136.343	1/1:140:0,140:0:0:140:4987:-448.892,-42.1442,0	1/1:103:0,103:0:0:103:3641:-327.878,-31.0061,0	0/1:156:46,109:46:1652:109:3904:-304.534,0,-101.949	1/1:162:2,160:2:72:160:5739:-509.788,-41.9301,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:119:0,119:0:0:119:4257:-383.309,-35.8226,0	1/1:105:0,105:0:0:105:3735:-336.194,-31.6082,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:139:1,138:1:36:138:4869:-434.636,-38.2449,0	1/1:41:0,41:0:0:41:1448:-130.613,-12.3422,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:86:33,53:33:1176:53:1891:-144.579,0,-80.2592	1/1:125:2,123:2:72:123:4411:-390.324,-30.792,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:123:41,82:41:1464:82:2928:-226.729,0,-95.0294	1/1:150:0,150:0:0:150:5344:-481.095,-45.1545,0	0/1:51:20,31:20:712:31:1116:-85.3992,0,-49.0541	0/1:55:24,31:24:860:31:1087:-81.5817,0,-61.1652	1/1:139:3,136:3:108:136:4853:-426.848,-31.768,0	1/1:203:2,200:2:72:200:7106:-632.765,-54.3312,0	0/1:80:34,46:34:1224:46:1620:-122.004,0,-86.3846	0/1:64:24,40:24:860:40:1427:-109.461,0,-58.4559	0/1:61:40,21:40:1432:21:756:-50.0044,0,-110.815	0/1:15:8,7:8:284:7:252:-18.5135,0,-21.3879	1/1:162:0,162:0:0:162:5760:-518.518,-48.7669,0	0/1:106:58,48:58:2063:48:1720:-123.176,0,-154.031	1/1:126:0,126:0:0:126:4490:-404.268,-37.9298,0	0/1:141:64,77:64:2304:77:2740:-204.396,0,-165.175	0/1:103:55,48:55:1972:48:1695:-121.828,0,-146.749	1/1:92:0,92:0:0:92:3278:-295.24,-27.6948,0	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/1:89:37,51:37:1324:51:1795:-134.98,0,-92.6117	1/1:97:0,97:0:0:97:3424:-308.372,-29.1999,0	0/1:131:62,69:62:2228:69:2454:-181.679,0,-161.349	0/1:61:28,33:28:1008:33:1179:-88.0544,0,-72.6735	0/1:80:40,40:40:1428:40:1419:-103.924,0,-104.735	1/1:50:0,50:0:0:50:1791:-161.472,-15.0515,0	1/1:151:0,151:0:0:151:5419:-487.82,-45.4555,0	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	0/1:73:49,24:49:1756:24:864:-56.1074,0,-136.349	0/1:81:37,44:37:1332:44:1549:-115.316,0,-95.799	0/1:62:22,40:22:788:40:1432:-110.514,0,-52.5809	0/1:155:89,66:89:3185:66:2368:-166.718,0,-240.212	0/1:66:40,26:40:1425:26:932:-64.3309,0,-108.678	1/1:173:0,173:0:0:173:6154:-553.963,-52.0782,0	1/1:97:0,97:0:0:97:3479:-313.32,-29.1999,0
chr11	28705924	.	T	A	111403	PASS	AB=0.548766;ABP=244.024;AC=90;AF=0.478723;AN=188;AO=6403;CIGAR=1X;DP=11687;DPB=11687;DPRA=27.2936;EPP=13906.9;EPPR=11442.3;GTI=4;LEN=1;MEANALT=1.15556;MQM=59.9898;MQMR=59.9214;NS=94;NUMALT=1;ODDS=106.705;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228110;QR=188752;RO=5268;RPL=0;RPP=13906.9;RPPR=11442.3;RPR=6403;RUN=1;SAF=0;SAP=13906.9;SAR=6403;SRF=0;SRP=11442.3;SRR=5268;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:76:26,50:26:928:50:1777:-137.329,0,-60.96	0/1:147:85,62:85:3052:62:2211:-155.003,0,-230.601	0/1:159:63,96:63:2268:96:3415:-259.698,0,-156.517	0/1:409:206,203:206:7400:203:7242:-528.712,0,-542.756	0/1:126:74,52:74:2656:52:1872:-130.829,0,-201.356	0/1:80:48,32:48:1724:32:1139:-78.736,0,-131.363	0/1:80:32,48:32:1148:48:1703:-129.471,0,-79.5474	0/1:228:138,90:138:4948:90:3219:-221.297,0,-376.834	0/1:83:40,43:40:1436:43:1535:-113.457,0,-104.507	0/1:94:49,45:49:1764:45:1602:-116.172,0,-130.746	0/1:69:34,35:34:1215:35:1237:-90.8621,0,-88.8847	0/1:134:44,89:44:1571:89:3145:-242.878,0,-101.284	0/1:75:24,50:24:847:50:1755:-135.633,0,-53.9513	0/1:69:21,48:21:756:48:1706:-133.054,0,-47.5962	0/1:121:39,82:39:1404:82:2916:-226.249,0,-90.2346	0/1:102:52,50:52:1864:50:1773:-129.146,0,-137.334	0/1:71:26,45:26:927:45:1594:-122.376,0,-62.3742	0/1:56:23,33:23:824:33:1184:-90.0106,0,-57.5806	0/1:37:22,15:22:792:15:527:-36.6221,0,-60.4676	0/1:226:62,164:62:2228:164:5848:-458.397,0,-132.751	0/1:281:157,124:157:5619:124:4431:-314.372,0,-421.231	0/1:143:40,103:40:1436:103:3689:-289.163,0,-86.4904	0/1:159:69,90:69:2476:90:3224:-242.518,0,-175.207	0/1:64:31,33:31:1099:33:1167:-86.0705,0,-79.9535	0/1:99:62,37:62:2220:37:1311:-88.4889,0,-170.24	0/1:387:253,134:253:9057:134:4783:-314.127,0,-698.289	0/1:288:112,176:112:4024:176:6261:-476.888,0,-275.65	0/1:48:10,38:10:351:38:1351:-107.44,0,-17.4772	0/1:322:115,206:115:4120:206:7350:-564.558,0,-273.489	0/1:103:33,70:33:1188:70:2481:-192.537,0,-76.2225	0/1:120:58,61:58:2088:61:2196:-161.723,0,-151.985	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:293:124,169:124:4436:169:6046:-456.041,0,-311.21	0/1:180:103,77:103:3684:77:2758:-194.276,0,-277.578	0/1:66:21,44:21:752:44:1572:-121.845,0,-48.0796	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:122:33,89:33:1171:89:3169:-248.708,0,-68.971	0/1:25:3,21:3:108:21:743:-59.6091,0,-2.49062	0/1:184:57,126:57:2033:126:4470:-347.02,0,-127.792	0/1:88:24,64:24:860:64:2278:-178.791,0,-51.2312	0/1:110:50,58:50:1780:58:2069:-153.608,0,-127.612	0/1:160:77,83:77:2764:83:2958:-218.289,0,-200.567	0/1:212:132,77:132:4744:77:2711:-180.958,0,-363.843	0/1:243:64,179:64:2300:179:6382:-501.13,0,-134.107	0/1:110:65,45:65:2328:45:1607:-111.806,0,-176.664	0/1:160:81,79:81:2900:79:2808:-204.794,0,-212.913	0/1:126:64,62:64:2300:62:2218:-161.953,0,-169.331	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:182:89,93:89:3196:93:3325:-244.679,0,-233.075	0/1:47:23,23:23:828:23:828:-60.6369,0,-60.6369	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:189:66,123:66:2363:123:4390:-338.378,0,-156.011	0/1:56:34,22:34:1220:22:777:-53.3927,0,-93.2491	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:20:11,9:11:388:9:324:-23.4853,0,-29.2368	0/1:165:115,50:115:4124:50:1754:-108.47,0,-321.674	0/1:139:33,106:33:1184:106:3778:-298.375,0,-65.0251	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:259:99,159:99:3533:159:5674:-432.754,0,-240.141	0/1:229:111,118:111:3961:118:4212:-310.323,0,-287.744	0/1:78:27,51:27:968:51:1836:-142.04,0,-63.957	0/1:110:36,74:36:1288:74:2621:-203.023,0,-83.1057	0/1:297:162,135:162:5807:135:4783:-341.221,0,-433.312	0/1:141:38,103:38:1352:103:3688:-289.677,0,-79.5351	0/1:37:8,29:8:288:29:1023:-81.2436,0,-15.1293	0/1:66:22,44:22:788:44:1584:-122.984,0,-51.3768	0/1:41:9,32:9:324:32:1127:-89.3952,0,-17.1636	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	0/1:164:96,68:96:3432:68:2401:-166.977,0,-259.698	0/1:54:36,18:36:1288:18:618:-39.6826,0,-99.968	0/1:233:129,104:129:4624:104:3722:-265.04,0,-346.178	0/1:244:111,133:111:3988:133:4768:-355.825,0,-285.643	0/1:107:34,73:34:1212:73:2583:-200.507,0,-77.1655	0/1:136:73,63:73:2611:63:2256:-162.363,0,-194.297	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:153:85,68:85:3039:68:2444:-174.157,0,-227.682	0/1:107:31,76:31:1116:76:2724:-213.193,0,-68.5415	0/1:381:234,147:234:8345:147:5271:-359.832,0,-636.319	0/1:101:45,56:45:1616:56:1973:-147.439,0,-115.326	0/1:91:26,65:26:923:65:2289:-178.876,0,-55.993	0/1:72:26,46:26:932:46:1656:-127.654,0,-62.5247	0/1:184:52,132:52:1864:132:4697:-367.488,0,-112.65	0/1:27:5,22:5:180:22:775:-61.9434,0,-8.42425	0/1:135:65,70:65:2340:70:2489:-183.623,0,-170.175	0/1:122:52,69:52:1868:69:2452:-184.151,0,-131.615	0/1:44:14,30:14:496:30:1068:-83.1867,0,-31.7289	0/1:114:30,84:30:1068:84:2955:-231.864,0,-62.1146	0/1:83:19,64:19:680:64:2291:-181.465,0,-36.5437	0/1:266:142,123:142:5112:123:4395:-315.59,0,-380.08	0/1:168:71,97:71:2552:97:3438:-259.06,0,-179.356
chr11	28705947	.	GG	AA,GA	239674	PASS	AB=0.448622,0.550038;ABP=276.791,262.697;AC=98,90;AF=0.521277,0.478723;AN=188;AO=5376,6568;CIGAR=2X,1M1X;DP=11960;DPB=11960;DPRA=0,27.9322;EPP=11650.8,14109.3;EPPR=5.18177;GTI=4;LEN=2,1;MEANALT=2.08511,2.13333;MQM=59.9098,59.9901;MQMR=60;NS=94;NUMALT=2;ODDS=105.833;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=190338,235529;QR=36;RO=1;RPL=5373,6550;RPP=11650.8,14109.3;RPPR=5.18177;RPR=3,18;RUN=1,1;SAF=0,0;SAP=11676.8,14265.2;SAR=5376,6568;SRF=0;SRP=5.18177;SRR=1;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:77:0,26,51:0:0:26,51:936,1806:-223.784,-147.409,-139.582,-76.7327,0,-61.3802	1/2:148:0,87,61:0:0:87,61:3109,2190:-432.436,-179.003,-152.813,-253.791,0,-235.428	1/2:162:0,63,99:0:0:63,99:2220,3555:-471.081,-290.338,-271.373,-181.098,0,-151.296	1/2:419:0,209,210:0:0:209,210:7392,7513:-1214.95,-612.994,-550.079,-602.307,0,-539.091	1/2:126:0,74,52:0:0:74,52:2619,1868:-366.07,-152.746,-130.469,-213.681,0,-198.028	1/2:82:0,49,33:0:0:49,33:1742,1173:-237.899,-95.9416,-81.1911,-142.313,0,-132.379	1/2:82:0,32,50:0:0:32,50:1139,1800:-240.058,-147.231,-137.598,-93.1851,0,-78.1336	1/2:233:0,140,93:0:0:140,93:4928,3340:-673.992,-272.821,-230.676,-401.528,0,-373.532	1/2:87:0,40,47:0:0:40,47:1436,1692:-255.556,-138.418,-126.377,-117.497,0,-103.348	1/2:100:0,55,45:0:0:55,45:1940,1616:-290.145,-132.184,-115.627,-158.317,0,-144.771	1/2:71:0,36,35:0:0:36,35:1296,1256:-208.557,-102.809,-91.9722,-106.107,0,-95.5708	1/2:135:0,45,90:0:0:45,90:1598,3240:-394.934,-264.727,-251.181,-130.563,0,-103.47	1/2:79:0,25,54:0:0:25,54:889,1929:-230.075,-157.629,-150.103,-72.8023,0,-56.5467	1/2:74:0,22,52:0:0:22,52:792,1872:-217.729,-153.106,-146.483,-64.983,0,-49.3295	1/2:121:0,40,81:0:0:40,81:1414,2916:-353.449,-238.291,-226.249,-115.514,0,-91.1306	1/2:105:0,52,53:0:0:52,53:1842,1908:-306.09,-156.043,-140.389,-150.404,0,-134.45	1/2:71:0,26,45:0:0:26,45:917,1620:-207.208,-132.544,-124.717,-75.0195,0,-61.4731	1/2:57:0,23,34:0:0:23,34:826,1224:-167.584,-100.232,-93.3083,-67.7111,0,-57.4761	1/2:38:0,22,16:0:0:22,16:770,572:-109.639,-46.9969,-40.3743,-62.9959,0,-58.1794	1/2:229:0,62,167:0:0:62,167:2194,6012:-669.614,-490.909,-472.245,-179.061,0,-128.789	1/2:285:0,159,125:0:0:159,125:5541,4488:-816.843,-366.248,-318.384,-450.738,0,-413.109	1/2:147:0,43,104:0:0:43,104:1507,3720:-426.318,-303.695,-290.75,-122.976,0,-91.6686	1/2:166:0,71,95:0:0:71,95:2511,3412:-483.206,-278.696,-257.322,-204.866,0,-176.268	1/2:66:0,31,35:0:0:31,35:1088,1260:-191.709,-103.169,-93.8375,-88.8948,0,-78.3587	1/2:101:0,62,39:0:0:62,39:2193,1400:-293.149,-114.559,-95.8952,-178.947,0,-167.206	1/2:398:0,263,135:0:0:263,135:9369,4843:-1158.7,-395.383,-316.212,-763.679,0,-723.04	1/2:293:0,113,180:0:0:113,180:4023,6448:-854.105,-526.219,-492.203,-328.242,0,-274.057	1/2:50:0,10,40:0:0:10,40:360,1436:-146.871,-117.496,-114.486,-29.734,0,-17.6928	1/2:335:0,118,216:0:0:118,216:4175,7721:-969.202,-629.54,-594.019,-339.656,0,-274.634	1/2:108:0,37,71:0:0:37,71:1313,2556:-315.893,-208.916,-197.778,-107.333,0,-85.9595	1/2:125:0,60,64:0:0:60,64:2118,2288:-359.132,-186.664,-168.602,-172.57,0,-153.304	1/2:13:0,9,4:0:0:9,4:313,144:-37.5492,-12.1095,-9.40023,-25.7958,0,-24.5917	1/2:18:0,9,9:0:0:9,9:324,324:-53.2333,-26.7966,-24.0873,-26.7966,0,-24.0873	1/2:7:0,2,5:0:0:2,5:70,176:-20.3747,-14.6799,-14.0778,-6.04527,0,-4.54012	1/1:6:0,6,0:0:0:6,0:205,0:-18.7836,-1.80618,0,-18.7836,-1.80618,-18.7836	1/2:7:0,1,6:0:0:1,6:36,216:-20.9217,-17.9843,-17.6833,-3.29724,0,-1.49106	1/2:300:0,125,174:0:0:125,174:4429,6256:-871.298,-510.501,-472.873,-360.902,0,-308.523	1/2:186:0,105,80:0:0:105,80:3707,2876:-536.613,-234.744,-203.135,-301.976,0,-277.893	1/2:66:0,22,44:0:0:22,44:787,1580:-193.42,-129.246,-122.624,-64.5321,0,-51.2868	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/2:125:0,33,92:0:0:33,92:1158,3312:-364.84,-270.602,-260.668,-94.5907,0,-66.8959	1/2:25:0,3,22:0:0:3,22:106,792:-73.615,-64.983,-64.0799,-8.98601,0,-2.36335	1/2:186:0,56,130:0:0:56,130:1971,4641:-539.169,-378.718,-361.861,-160.804,0,-121.67	1/2:87:0,24,63:0:0:24,63:851,2268:-254.746,-185.417,-178.192,-69.6844,0,-50.7195	1/2:113:0,53,60:0:0:53,60:1892,2156:-330.491,-176.245,-160.291,-154.604,0,-136.542	1/2:163:0,77,86:0:0:77,86:2699,3076:-470.769,-251.18,-228,-219.943,0,-194.055	1/2:218:0,138,80:0:0:138,80:4885,2868:-632.134,-234.275,-192.732,-398.216,0,-374.133	1/2:247:0,66,181:0:0:66,181:2342,6508:-721.753,-530.943,-511.075,-191.165,0,-136.679	1/2:112:0,66,45:0:0:66,45:2316,1605:-319.308,-130.832,-110.964,-188.471,0,-174.924	1/2:164:0,83,81:0:0:83,81:2948,2889:-476.036,-235.862,-210.876,-240.53,0,-216.147	1/2:127:0,64,63:0:0:64,63:2253,2264:-368.467,-185.057,-165.792,-183.765,0,-164.801	1/2:8:0,6,2:0:0:6,2:216,72:-23.8592,-6.23466,-4.42848,-17.9843,0,-17.3823	1/2:187:0,91,96:0:0:91,96:3255,3446:-546.871,-281.452,-254.059,-265.777,0,-236.878	1/2:48:0,24,24:0:0:24,24:864,860:-140.996,-70.4971,-63.2724,-70.8578,0,-63.6331	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,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chr11	28705965	.	C	T	86500.7	PASS	AB=0.449174;ABP=269.216;AC=98;AF=0.521277;AN=188;AO=5348;CIGAR=1X;DP=11883;DPB=11883;DPRA=0;EPP=11616;EPPR=14178.4;GTI=4;LEN=1;MEANALT=1.07447;MQM=59.9088;MQMR=59.9916;NS=94;NUMALT=1;ODDS=106.38;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=190512;QR=233028;RO=6528;RPL=5348;RPP=11616;RPPR=14178.4;RPR=0;RUN=1;SAF=0;SAP=11616;SAR=5348;SRF=0;SRP=14178.4;SRR=6528;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:47,26:47:1665:26:928:-61.5034,0,-127.801	0/1:150:63,87:63:2253:87:3094:-233.476,0,-157.877	0/1:163:101,62:101:3606:62:2193:-148.566,0,-275.658	0/1:416:209,207:209:7442:207:7404:-541.012,0,-544.598	0/1:126:51,75:51:1828:75:2663:-201.985,0,-126.871	0/1:82:33,49:33:1173:49:1740:-132.2,0,-81.1911	0/1:82:50,32:50:1788:32:1125:-76.8716,0,-136.518	0/1:231:91,140:91:3234:140:4990:-379.71,0,-221.742	0/1:87:46,41:46:1648:41:1456:-105.101,0,-122.419	0/1:99:45,54:45:1616:54:1910:-142.371,0,-115.928	0/1:70:34,36:34:1220:36:1288:-95.1515,0,-89.0347	0/1:136:91,45:91:3248:45:1612:-104.43,0,-251.599	0/1:77:52,25:52:1864:25:896:-57.781,0,-144.86	0/1:74:53,21:53:1908:21:752:-45.73,0,-149.721	0/1:121:81,40:81:2870:40:1432:-92.753,0,-222.111	0/1:105:53,52:53:1904:52:1853:-135.44,0,-140.03	0/1:69:44,25:44:1576:25:896:-60.1893,0,-121.36	0/1:56:33,23:33:1188:23:828:-57.9414,0,-90.3709	0/1:37:15,22:15:540:22:792:-60.4676,0,-37.7984	0/1:228:168,60:168:6024:60:2148:-124.953,0,-473.628	0/1:281:124,157:124:4414:157:5602:-419.708,0,-312.842	0/1:145:102,43:102:3610:43:1525:-93.8934,0,-281.457	0/1:165:95,70:95:3389:70:2491:-174.766,0,-255.554	0/1:66:35,31:35:1241:31:1112:-80.5234,0,-92.1245	0/1:101:38,63:38:1334:63:2233:-170.806,0,-89.9518	0/1:394:135,259:135:4822:259:9203:-709.481,0,-315.526	0/1:290:177,113:177:6326:113:4002:-273.07,0,-482.13	0/1:48:38,10:38:1368:10:360:-18.2949,0,-108.971	0/1:331:214,117:214:7635:117:4147:-273.729,0,-587.544	0/1:106:69,37:69:2452:37:1332:-88.2732,0,-189.026	0/1:123:63,60:63:2241:60:2149:-156.639,0,-164.925	0/1:14:4,10:4:129:10:356:-28.1668,0,-7.71324	0/1:18:9,9:9:305:9:324:-24.0873,0,-22.3587	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:299:175,123:175:6254:123:4420:-307.903,0,-472.885	0/1:186:79,107:79:2832:107:3829:-288.686,0,-199.127	0/1:67:45,22:45:1616:22:792:-51.4367,0,-125.561	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:125:91,33:91:3256:33:1153:-66.3869,0,-255.573	0/1:25:22,3:22:792:3:108:-2.54942,0,-64.0799	0/1:185:129,56:129:4563:56:1995:-124.133,0,-355.146	0/1:87:63,24:63:2256:24:860:-51.5322,0,-177.113	0/1:113:61,52:61:2192:52:1872:-134.743,0,-163.529	0/1:158:82,76:82:2894:76:2697:-195.128,0,-213.132	0/1:215:78,137:78:2789:137:4897:-376.116,0,-186.527	0/1:247:183,64:183:6561:64:2270:-130.201,0,-515.844	0/1:111:44,67:44:1572:67:2358:-179.06,0,-108.357	0/1:162:80,82:80:2853:82:2909:-213.263,0,-208.24	0/1:126:62,63:62:2209:63:2207:-160.901,0,-161.085	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	0/1:186:96,90:96:3448:90:3187:-231.059,0,-254.54	0/1:48:24,24:24:860:24:860:-63.2724,0,-63.2724	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:197:128,69:128:4573:69:2460:-162.33,0,-352.43	0/1:55:22,33:22:788:33:1176:-89.5911,0,-54.6881	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:165:49,115:49:1729:115:4113:-320.625,0,-106.164	0/1:145:112,33:112:3978:33:1188:-63.5792,0,-314.56	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:261:162,99:162:5801:99:3552:-241.291,0,-443.633	0/1:235:122,113:122:4365:113:3999:-289.356,0,-322.28	0/1:78:50,28:50:1773:28:991:-66.0231,0,-136.371	0/1:110:74,36:74:2626:36:1251:-79.7689,0,-203.471	0/1:310:140,170:140:4994:170:6046:-450.913,0,-356.287	0/1:146:106,39:106:3781:39:1392:-81.5699,0,-296.479	0/1:38:30,8:30:1080:8:288:-14.8283,0,-86.0741	0/1:68:46,22:46:1652:22:788:-50.7748,0,-128.498	0/1:42:32,10:32:1129:10:356:-19.738,0,-89.2731	0/1:31:16,15:16:568:15:540:-39.6046,0,-42.1199	0/1:168:70,98:70:2470:98:3486:-263.33,0,-171.979	0/1:53:18,35:18:632:35:1241:-96.0395,0,-41.2522	0/1:236:103,133:103:3677:133:4705:-352.529,0,-260.089	0/1:243:131,112:131:4669:112:4012:-288.104,0,-347.222	0/1:111:77,34:77:2732:34:1220:-76.6818,0,-212.707	0/1:137:64,73:64:2300:73:2619:-194.716,0,-166.02	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:155:67,87:67:2397:87:3096:-232.151,0,-169.267	0/1:113:81,32:81:2889:32:1136:-68.5325,0,-226.229	0/1:387:151,236:151:5401:236:8407:-640.096,0,-369.721	0/1:100:54,46:54:1940:46:1656:-119.221,0,-144.773	0/1:91:65,26:65:2328:26:930:-56.6246,0,-182.386	0/1:75:49,26:49:1756:26:932:-61.6216,0,-135.747	0/1:189:137,52:137:4897:52:1856:-110.425,0,-383.986	0/1:28:23,5:23:828:5:180:-8.12322,0,-66.4153	0/1:134:69,65:69:2464:65:2340:-170.476,0,-181.676	0/1:124:69,55:69:2457:55:1965:-139.794,0,-184.055	0/1:45:31,14:31:1112:14:500:-31.7898,0,-86.845	0/1:116:86,30:86:3080:30:1065:-61.2403,0,-242.508	0/1:83:64,19:64:2304:19:684:-36.9048,0,-182.635	0/1:269:128,141:128:4569:141:4979:-367.284,0,-330.398	0/1:168:95,73:95:3401:73:2620:-185.473,0,-255.73
chr11	28705978	.	GGGTG	TGGTA,TGGTG	119113	PASS	AB=0.684769,0.311442;ABP=1176.98,1225.62;AC=126,60;AF=0.677419,0.322581;AN=186;AO=4531,1252;CIGAR=1X3M1X,1X4M;DP=5805;DPB=5805.6;DPRA=63.087,1.36325;EPP=9841.95,2721.69;EPPR=0;GTI=10;LEN=5,1;MEANALT=1.95652,2.23529;MQM=59.9181,59.9816;MQMR=0;NS=93;NUMALT=2;ODDS=3695.77;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=108,0;PQR=0;PRO=0;QA=159988,44851;QR=0;RO=0;RPL=0,1;RPP=9841.95,2713.01;RPPR=0;RPR=4531,1251;RUN=1,1;SAF=4531,1251;SAP=9841.95,2713.01;SAR=0,1;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:99:0,99,0:0:0:99,0:3484,0:-313.772,-29.802,0,-313.772,-29.802,-313.772	1/2:79:0,35,43:0:0:35,43:1231,1548:-226.619,-126.416,-115.88,-100.304,0,-87.3595	1/2:180:0,144,36:0:0:144,36:5080,1292:-519.031,-105.387,-62.0386,-413.642,0,-402.805	1/2:45:0,36,9:0:0:36,9:1292,324:-132.184,-26.7966,-15.9595,-105.747,0,-103.038	1/2:35:0,27,7:0:0:27,7:949,252:-97.7978,-20.5619,-12.4341,-77.2343,0,-75.127	1/1:16:0,16,0:0:0:16,0:553,0:-50.0949,-4.81648,0,-50.0949,-4.81648,-50.0949	1/1:83:0,83,0:0:0:83,0:2941,0:-264.926,-24.9855,0,-264.926,-24.9855,-264.926	1/2:63:0,22,40:0:0:22,40:768,1436:-179.612,-117.146,-110.524,-62.4677,0,-50.4265	1/1:113:0,111,2:0:0:111,2:3895,72:-350.388,-33.4143,0,-344.513,-27.1797,-343.911	1/2:57:0,50,7:0:0:50,7:1787,252:-166.623,-20.9217,-5.87025,-146.061,0,-143.954	1/2:21:0,18,3:0:0:18,3:637,108:-61.0523,-9.17208,-3.75354,-52.2392,0,-51.3361	1/2:25:0,12,13:0:0:12,13:424,468:-73.0739,-38.5463,-34.9339,-34.884,0,-30.9706	1/2:36:0,32,4:0:0:32,4:1121,144:-103.314,-12.1095,-2.47654,-91.5636,0,-90.3595	1/2:40:0,29,10:0:0:29,10:1031,360:-113.389,-29.3742,-20.6443,-84.0136,0,-81.0033	1/2:35:0,31,4:0:0:31,4:1103,144:-101.999,-12.1095,-2.77757,-90.2489,0,-89.0448	1/2:65:0,56,9:0:0:56,9:2011,324:-190.841,-26.7966,-9.9389,-164.404,0,-161.694	1/2:37:0,30,7:0:0:30,7:1058,252:-107.063,-20.9217,-11.8908,-86.4997,0,-84.3925	1/1:41:0,39,2:0:0:39,2:1386,72:-124.678,-11.7402,0,-118.803,-5.50551,-118.201	1/1:41:0,39,1:0:0:39,1:1387,36:-124.817,-11.7402,0,-121.879,-8.75283,-121.578	1/2:133:0,100,33:0:0:100,33:3512,1172:-381.687,-95.8535,-65.7505,-286.187,0,-276.253	1/1:19:0,19,0:0:0:19,0:664,0:-59.7243,-5.71957,0,-59.7243,-5.71957,-59.7243	1/2:32:0,9,23:0:0:9,23:311,820:-92.4646,-67.1988,-64.4896,-25.6142,0,-18.6905	1/1:26:0,26,0:0:0:26,0:913,0:-82.485,-7.82678,0,-82.485,-7.82678,-82.485	1/1:21:0,21,0:0:0:21,0:741,0:-67.0133,-6.32163,0,-67.0133,-6.32163,-67.0133	1/2:354:0,280,71:0:0:280,71:9856,2544:-1009.86,-207.561,-123.273,-802.377,0,-781.003	1/2:94:0,51,43:0:0:51,43:1808,1536:-272.881,-125.589,-110.236,-147.648,0,-134.704	1/2:18:0,10,8:0:0:10,8:353,288:-52.6009,-23.8592,-20.8489,-29.0985,0,-26.6903	1/2:114:0,42,72:0:0:42,72:1486,2584:-332.17,-211.135,-198.491,-121.391,0,-99.7167	1/2:82:0,63,18:0:0:63,18:2228,644:-233.097,-52.5691,-33.6042,-180.582,0,-175.163	1/1:101:0,101,0:0:0:101,0:3575,0:-321.958,-30.404,0,-321.958,-30.404,-321.958	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/1:13:0,12,1:0:0:12,1:428,36:-38.4994,-3.61236,0,-35.5617,-0.315115,-35.2607	.:.:.:.:.:.:.:.	1/2:19:0,12,7:0:0:12,7:429,252:-55.8953,-20.9171,-17.3047,-35.3371,0,-33.2299	1/1:8:0,8,0:0:0:8,0:285,0:-25.9944,-2.40824,0,-25.9944,-2.40824,-25.9944	1/2:147:0,132,14:0:0:132,14:4676,504:-422.032,-41.1238,-1.38788,-380.907,0,-376.693	1/1:99:0,99,0:0:0:99,0:3464,0:-311.973,-29.802,0,-311.973,-29.802,-311.973	1/2:58:0,48,10:0:0:48,10:1711,356:-168.842,-29.3709,-14.9215,-139.827,0,-136.816	2/2:1:0,0,1:0:0:0,1:0,32:-3.19931,-3.19931,-3.19931,-0.30103,-0.30103,0	1/2:88:0,54,34:0:0:54,34:1904,1216:-254.538,-99.5115,-83.2559,-155.382,0,-145.147	1/2:23:0,11,11:0:0:11,11:386,396:-63.7497,-32.339,-29.0277,-31.433,0,-28.1216	1/1:33:0,31,0:0:0:31,0:1101,0:-99.0598,-9.33193,0,-99.0598,-9.33193,-99.0598	1/2:27:0,20,7:0:0:20,7:720,252:-79.6701,-20.9217,-14.9011,-59.1082,0,-57.001	1/2:56:0,46,10:0:0:46,10:1609,356:-160.264,-29.3709,-15.5236,-131.248,0,-128.238	1/1:99:0,94,3:0:0:94,3:3304,104:-297.24,-28.2968,0,-288.787,-19.8247,-287.884	1/2:76:0,57,18:0:0:57,18:2012,644:-216.35,-52.5123,-35.3536,-163.835,0,-158.416	1/1:56:0,56,0:0:0:56,0:1984,0:-178.833,-16.8577,0,-178.833,-16.8577,-178.833	1/1:92:0,92,0:0:0:92,0:3237,0:-291.551,-27.6948,0,-291.551,-27.6948,-291.551	1/2:118:0,94,24:0:0:94,24:3355,864:-344.37,-70.8578,-42.561,-273.872,0,-266.647	1/1:80:0,76,4:0:0:76,4:2672,144:-240.362,-22.8783,0,-228.612,-10.7688,-227.408	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:100:0,99,1:0:0:99,1:3511,36:-315.827,-29.802,0,-312.89,-26.5047,-312.589	1/1:28:0,28,0:0:0:28,0:1003,0:-90.5861,-8.42884,0,-90.5861,-8.42884,-90.5861	1/1:7:0,7,0:0:0:7,0:239,0:-21.8427,-2.10721,0,-21.8427,-2.10721,-21.8427	1/1:40:0,40,0:0:0:40,0:1396,0:-125.935,-12.0412,0,-125.935,-12.0412,-125.935	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/2:5:0,4,1:0:0:4,1:143,36:-14.9552,-3.29724,-2.09312,-12.0173,0,-11.7163	1/1:17:0,17,0:0:0:17,0:590,0:-53.4252,-5.11751,0,-53.4252,-5.11751,-53.4252	1/2:62:0,39,23:0:0:39,23:1377,820:-179.332,-67.1988,-55.4587,-112.488,0,-105.564	1/2:75:0,55,20:0:0:55,20:1965,720:-219.317,-59.1082,-42.5515,-160.568,0,-154.548	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:188:0,83,105:0:0:83,105:2903,3760:-543.08,-306.935,-281.95,-236.498,0,-204.89	1/1:82:0,82,0:0:0:82,0:2896,0:-260.878,-24.6845,0,-260.878,-24.6845,-260.878	1/2:67:0,45,22:0:0:45,22:1596,780:-193.929,-63.9004,-50.354,-130.383,0,-123.761	1/2:36:0,19,17:0:0:19,17:675,612:-105.297,-50.2959,-44.5764,-55.3582,0,-50.2407	1/1:130:0,128,0:0:0:128,0:4505,0:-404.594,-38.5318,0,-404.594,-38.5318,-404.594	1/1:33:0,33,0:0:0:33,0:1155,0:-104.255,-9.93399,0,-104.255,-9.93399,-104.255	1/2:18:0,13,5:0:0:13,5:467,180:-53.1431,-15.0469,-11.1335,-38.4558,0,-36.9507	1/2:43:0,29,14:0:0:29,14:1020,504:-124.508,-41.4837,-32.7538,-83.3815,0,-79.1671	1/2:31:0,20,11:0:0:20,11:710,392:-90.1575,-32.3087,-26.2881,-58.2045,0,-54.8932	1/2:14:0,10,4:0:0:10,4:350,144:-40.579,-12.1095,-9.0992,-28.8265,0,-27.6224	1/1:86:0,86,0:0:0:86,0:3032,0:-273.026,-25.8886,0,-273.026,-25.8886,-273.026	1/2:65:0,47,18:0:0:47,18:1675,644:-189.404,-52.8721,-38.7236,-136.889,0,-131.47	1/1:132:0,132,0:0:0:132,0:4668,0:-420.272,-39.736,0,-420.272,-39.736,-420.272	1/2:162:0,116,46:0:0:116,46:4127,1648:-470.74,-134.401,-99.4819,-336.336,0,-322.489	1/2:54:0,23,31:0:0:23,31:803,1112:-156.371,-91.0594,-84.1357,-65.6649,0,-56.333	1/1:102:0,99,3:0:0:99,3:3508,108:-315.504,-29.802,0,-306.691,-20.6299,-305.788	1/2:14:0,7,7:0:0:7,7:251,252:-41.3933,-20.9217,-18.8145,-20.8306,0,-18.7234	1/2:90:0,66,24:0:0:66,24:2333,856:-260.142,-70.1362,-50.2682,-190.361,0,-183.137	1/1:23:0,22,1:0:0:22,1:768,36:-69.0806,-6.62266,0,-66.1428,-3.32542,-65.8417	1/2:191:0,116,74:0:0:116,74:4110,2644:-550.383,-215.571,-180.651,-334.809,0,-312.532	1/2:91:0,72,19:0:0:72,19:2574,680:-265.688,-55.8096,-34.1354,-210.236,0,-204.517	1/2:32:0,17,14:0:0:17,14:601,500:-89.6635,-40.7621,-35.6446,-48.8972,0,-44.6827	1/2:28:0,25,3:0:0:25,3:886,108:-81.3091,-9.17208,-1.64633,-72.4962,0,-71.5931	1/2:49:0,41,8:0:0:41,8:1459,288:-142.764,-23.8592,-11.5169,-119.264,0,-116.855	1/1:15:0,15,0:0:0:15,0:530,0:-48.0313,-4.51545,0,-48.0313,-4.51545,-48.0313	1/2:50:0,38,11:0:0:38,11:1325,392:-139.702,-31.9492,-20.5101,-107.748,0,-104.437	1/2:56:0,35,20:0:0:35,20:1237,720:-159.489,-58.7483,-48.2123,-100.738,0,-94.7175	1/2:35:0,27,8:0:0:27,8:947,284:-100.556,-23.4951,-15.3673,-77.415,0,-75.0067	1/2:76:0,49,27:0:0:49,27:1713,959:-217.848,-78.4976,-63.7471,-139.704,0,-131.576	1/2:35:0,10,25:0:0:10,25:324,896:-99.5649,-73.4346,-70.4243,-26.464,0,-18.9382	1/2:154:0,93,61:0:0:93,61:3250,2192:-443.556,-179.183,-151.187,-264.729,0,-246.366	1/2:70:0,54,16:0:0:54,16:1896,576:-201.663,-47.3585,-31.1029,-154.662,0,-149.845
chr11	28705988	.	CCC	CCG,GCG	14046.5	PASS	AB=0.308008,0.132758;ABP=1018.59,2173.69;AC=42,16;AF=0.225806,0.0860215;AN=186;AO=986,271;CIGAR=2M1X,1X1M1X;DP=5827;DPB=5836.67;DPRA=1.39239,1.27692;EPP=2144.08,591.479;EPPR=9870.18;GTI=12;LEN=1,3;MEANALT=1.73333,1.71053;MQM=59.9929,60;MQMR=59.9283;NS=93;NUMALT=2;ODDS=0.358213;PAIRED=0,0;PAIREDR=0;PAO=9,10;PQA=322,358;PQR=0;PRO=10;QA=35227,9541;QR=159569;RO=4544;RPL=0,0;RPP=2144.08,591.479;RPPR=9870.18;RPR=986,271;RUN=1,1;SAF=986,271;SAP=2144.08,591.479;SAR=0,0;SRF=4544;SRP=9870.18;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	0/0:3:3,0,0:3:108:0,0:0,0:0,-0.90309,-10.0752,-0.90309,-10.0752,-10.0752	0/0:98:98,0,0:98:3480:0,0:0,0:0,-29.5009,-313.412,-29.5009,-313.412,-313.412	0/1:80:36,44,0:36:1266:44,0:1576,0:-117.99,0,-90.1016,-128.827,-103.347,-231.878	0/1:180:146,33,0:146:5126:33,0:1168,0:-51.1825,0,-407.247,-95.1329,-417.181,-512.32	0/1:46:36,10,0:36:1286:10,0:360,0:-18.8095,0,-102.128,-29.6466,-105.138,-134.515	0/1:34:27,7,0:27:949:7,0:252,0:-12.7939,0,-75.4856,-20.9217,-77.5928,-98.1565	0/0:16:16,0,0:16:552:0,0:0,0:0,-4.81648,-50.0049,-4.81648,-50.0049,-50.0049	0/0:84:84,0,0:84:2955:0,0:0,0:0,-25.2865,-266.188,-25.2865,-266.188,-266.188	0/1:62:22,38,0:22:753:38,0:1364,0:-104.639,0,-49.6638,-111.262,-61.103,-172.375	0/0:112:110,0,2:110:3883:0,2:0,72:0,-33.1133,-349.309,-26.8786,-343.434,-342.832	0/0:57:50,4,3:50:1770:4,3:140,108:0,-3.66659,-146.635,-6.23497,-139.026,-149.513	0/2:20:17,0,3:17:592:0,3:0,108:-4.05457,-9.17208,-57.3029,0,-48.4889,-47.5858	0/1:26:13,8,5:13:452:8,5:284,176:-19.2287,0,-34.3384,-8.81503,-22.4172,-44.0551	0/2:36:32,0,4:32:1118:0,4:0,144:-2.47654,-12.1095,-103.044,0,-91.2931,-90.089	0/2:40:30,0,10:30:1047:0,10:0,360:-20.7031,-29.734,-114.884,0,-85.5073,-82.497	0/2:35:31,0,4:31:1093:0,4:0,144:-2.77757,-12.1095,-101.098,0,-89.3477,-88.1436	0/0:65:55,5,4:55:1934:5,4:180,144:0,-1.86557,-157.789,-4.80432,-147.543,-161.027	0/1:37:30,7,0:30:1049:7,0:252,0:-11.8908,0,-83.5807,-20.9217,-85.6879,-106.252	0/0:41:39,0,2:39:1382:0,2:0,70:0,-11.7402,-124.328,-5.6949,-118.633,-118.031	0/0:41:40,0,1:40:1394:0,1:0,36:0,-12.0412,-125.396,-8.74395,-122.458,-122.157	0/1:133:99,32,0:99:3442:32,0:1148,0:-63.8351,0,-270.202,-93.6371,-279.835,-373.476	0/0:20:20,0,0:20:684:0,0:0,0:0,-6.0206,-61.879,-6.0206,-61.879,-61.879	0/1:33:10,23,0:10:338:23,0:828,0:-64.9101,0,-20.8124,-67.9204,-27.7361,-95.312	0/0:26:26,0,0:26:920:0,0:0,0:0,-7.82678,-83.1174,-7.82678,-83.1174,-83.1174	0/0:21:21,0,0:21:747:0,0:0,0:0,-6.32163,-67.5554,-6.32163,-67.5554,-67.5554	0/1:354:283,69,1:283:9981:69,1:2467,36:-116.035,0,-791.954,-198.289,-809.788,-1010.64	0/1:92:50,42,0:50:1758:42,0:1483,0:-106.069,0,-130.805,-121.12,-143.448,-264.216	0/1:20:10,9,1:10:350:9,1:324,36:-23.4265,0,-25.7582,-23.4993,-25.5292,-51.6696	0/1:114:42,72,0:42:1499:72,0:2575,0:-197.682,0,-100.888,-210.325,-122.562,-332.53	0/1:85:64,21,0:64:2254:21,0:748,0:-41.9841,0,-176.45,-61.25,-182.772,-243.742	0/0:100:99,0,0:99:3471:0,0:0,0:0,-29.802,-312.39,-29.802,-312.39,-312.39	0/1:6:3,3,0:3:104:3,0:104,0:-7.71972,0,-7.71993,-8.62281,-8.62302,-17.1004	0/0:12:11,0,1:11:396:0,1:0,33:0,-3.31133,-35.7623,-0.508274,-33.0945,-32.7935	.:.:.:.:.:.:.:.	0/1:19:12,7,0:12:428:7,0:248,0:-16.843,0,-33.0565,-20.4554,-35.1637,-55.3691	0/0:8:8,0,0:8:280:0,0:0,0:0,-2.40824,-25.3725,-2.40824,-25.3725,-25.3725	0/2:149:135,0,14:135:4709:0,14:0,495:-0.0295629,-40.6686,-423.654,0,-383.339,-379.124	0/0:100:100,0,0:100:3503:0,0:0,0:0,-30.103,-315.484,-30.103,-315.484,-315.484	0/1:59:48,8,3:48:1666:8,3:288,106:-9.05473,0,-133.015,-14.8732,-126.791,-149.389	2/2:1:0,0,1:0:0:0,1:0,34:-3.39891,-3.39891,-3.39891,-0.30103,-0.30103,0	0/1:87:53,33,0:53:1850:33,0:1184,0:-80.5615,0,-140.472,-96.5161,-150.406,-246.985	0/2:23:12,0,11:12:420:0,11:0,396:-29.0043,-32.6167,-66.7801,0,-34.4661,-31.1548	0/0:33:33,0,0:33:1152:0,0:0,0:0,-9.93399,-103.984,-9.93399,-103.984,-103.984	0/2:27:20,0,7:20:706:0,7:0,252:-14.9011,-20.9217,-78.4088,0,-57.845,-55.7378	0/2:57:47,0,10:47:1655:0,10:0,352:-14.8589,-29.0073,-163.743,0,-135.088,-132.077	0/0:98:95,0,3:95:3340:0,3:0,99:0,-28.5978,-300.485,-20.2644,-292.482,-291.579	0/1:77:57,20,0:57:1984:20,0:708,0:-40.8663,0,-155.653,-58.025,-161.673,-219.346	0/0:56:56,0,0:56:1964:0,0:0,0:0,-16.8577,-177.034,-16.8577,-177.034,-177.034	0/0:92:92,0,0:92:3225:0,0:0,0:0,-27.6948,-290.47,-27.6948,-290.47,-290.47	0/1:119:91,24,0:91:3221:24,0:852,0:-42.0228,0,-255.138,-69.4165,-262.363,-331.784	0/0:80:75,0,4:75:2632:0,4:0,142:0,-22.5772,-236.78,-10.9791,-225.21,-224.005	0/0:4:4,0,0:4:140:0,0:0,0:0,-1.20412,-12.9448,-1.20412,-12.9448,-12.9448	0/0:98:97,0,0:97:3407:0,0:0,0:0,-29.1999,-306.481,-29.1999,-306.481,-306.481	0/0:28:28,0,0:28:985:0,0:0,0:0,-8.42884,-88.9634,-8.42884,-88.9634,-88.9634	0/0:7:7,0,0:7:228:0,0:0,0:0,-2.10721,-20.8376,-2.10721,-20.8376,-20.8376	0/0:40:40,0,0:40:1429:0,0:0,0:0,-12.0412,-128.908,-12.0412,-128.908,-128.908	0/2:5:4,0,1:4:142:0,1:0,32:-1.46081,-2.66493,-14.3541,0,-11.7667,-11.4657	0/1:5:4,1,0:4:142:1,0:36,0:-2.09312,0,-11.6241,-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chr11	28706014	.	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chr11	28750284	.	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chr11	28750297	.	T	G	29422.3	PASS	AB=0.451004;ABP=88.1244;AC=49;AF=0.260638;AN=188;AO=1861;CIGAR=1X;DP=8881;DPB=8881;DPRA=0.92444;EPP=4044.12;EPPR=15238.1;GTI=5;LEN=1;MEANALT=1.01887;MQM=49.4567;MQMR=28.5201;NS=94;NUMALT=1;ODDS=0.727158;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66694;QR=251718;RO=7016;RPL=0;RPP=4044.12;RPPR=15238.1;RPR=1861;RUN=1;SAF=1861;SAP=4044.12;SAR=0;SRF=7016;SRP=15238.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1612:0:0:0,-13.5463,-117.782	0/0:147:146,1:146:5235:1:36:0,-40.66,-374.132	0/1:187:94,93:94:3376:93:3320:-241.214,0,-189.498	0/1:251:146,105:146:5243:105:3776:-260.909,0,-280.621	0/1:87:57,30:57:2039:30:1076:-70.5132,0,-115.452	0/1:36:19,17:19:684:17:608:-44.1143,0,-39.0905	0/0:175:175,0:175:6284:0:0:0,-52.6802,-431.988	0/0:136:136,0:136:4876:0:0:0,-40.9401,-352.662	0/1:42:17,25:17:612:25:900:-68.3288,0,-31.5799	0/0:86:86,0:86:3069:0:0:0,-25.8886,-210.406	0/1:24:11,13:11:396:13:468:-34.7547,0,-19.7215	0/0:45:45,0:45:1612:0:0:0,-13.5463,-117.542	0/1:29:17,12:17:608:12:432:-30.4166,0,-33.9535	0/0:37:37,0:37:1332:0:0:0,-11.1381,-92.8033	0/0:38:38,0:38:1364:0:0:0,-11.4391,-93.3006	0/0:35:35,0:35:1256:0:0:0,-10.536,-88.0468	0/1:34:12,22:12:432:22:788:-60.816,0,-21.543	0/1:20:16,4:16:576:4:140:-6.85127,0,-36.6919	0/0:16:16,0:16:576:0:0:0,-4.81648,-41.6105	0/0:277:277,0:277:9924:0:0:0,-83.3853,-680.238	0/1:100:49,51:49:1760:51:1832:-133.883,0,-93.3404	0/0:203:203,0:203:7256:0:0:0,-61.1091,-493.806	0/1:83:59,24:59:2116:24:860:-52.3235,0,-119.29	0/0:117:108,9:108:3856:9:324:0,-5.8395,-241.474	0/0:65:64,0:64:2300:0:0:0,-19.2659,-161.576	0/1:272:138,134:138:4930:134:4800:-346.481,0,-252.91	0/1:145:82,63:82:2952:63:2260:-159.046,0,-164.209	0/1:15:10,5:10:360:5:180:-11.9095,0,-21.1564	0/1:394:196,197:196:7028:197:7068:-511.943,0,-360.493	0/1:133:64,69:64:2281:69:2474:-181.292,0,-119.957	0/0:164:161,3:161:5784:3:108:0,-39.3484,-384.01	0/1:3:1,2:1:36:2:72:-5.9047,0,-1.91799	0/0:12:12,0:12:428:0:0:0,-3.61236,-30.6614	1/1:1:0,1:0:0:1:36:-3.59142,-0.30103,0	0/1:7:1,6:1:36:6:212:-17.2837,0,-0.795554	0/0:9:9,0:9:324:0:0:0,-2.70927,-24.0792	0/0:112:112,0:112:4011:0:0:0,-33.7154,-275.495	0/0:219:219,0:219:7855:0:0:0,-65.9256,-551.021	0/1:19:5,14:5:180:14:504:-39.88,0,-7.63315	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.438	0/1:259:145,114:145:5201:114:4073:-286.71,0,-287.484	0/0:19:19,0:19:684:0:0:0,-5.71957,-46.5572	0/0:172:171,0:171:6144:0:0:0,-51.4761,-431.727	0/0:28:28,0:28:1004:0:0:0,-8.42884,-70.0151	0/0:23:23,0:23:828:0:0:0,-6.92369,-57.0665	0/0:120:120,0:120:4312:0:0:0,-36.1236,-294.277	0/1:113:60,53:60:2156:53:1895:-136.306,0,-123.227	0/0:242:242,0:242:8676:0:0:0,-72.8493,-594.553	0/0:155:155,0:155:5549:0:0:0,-46.6596,-379.44	0/1:117:63,54:63:2256:54:1940:-138.252,0,-119.178	0/0:189:189,0:189:6788:0:0:0,-56.8947,-462.389	0/0:9:9,0:9:324:0:0:0,-2.70927,-22.4369	0/0:325:324,0:324:11639:0:0:0,-97.5337,-845.71	0/0:48:48,0:48:1728:0:0:0,-14.4494,-117.538	0/1:9:4,5:4:144:5:180:-13.8113,0,-8.03096	0/0:131:131,0:131:4691:0:0:0,-39.4349,-332.926	0/0:36:36,0:36:1288:0:0:0,-10.8371,-88.9297	0/1:4:1,3:1:36:3:108:-8.75256,0,-1.53208	0/0:19:19,0:19:684:0:0:0,-5.71957,-46.1198	0/1:81:45,36:45:1620:36:1288:-90.6594,0,-89.5575	0/0:61:61,0:61:2196:0:0:0,-18.3628,-150.292	0/1:2:1,1:1:36:1:36:-2.97671,0,-2.13414	0/1:209:116,93:116:4157:93:3346:-235.261,0,-220.993	0/0:231:231,0:231:8296:0:0:0,-69.5379,-567.303	0/1:83:54,29:54:1940:29:1044:-68.8757,0,-110.901	0/1:121:74,47:74:2656:47:1684:-114.432,0,-146.014	0/0:138:137,1:137:4907:1:36:0,-37.9634,-333.225	0/0:83:81,2:81:2916:2:72:0,-18.1858,-193.522	0/1:12:7,5:7:252:5:180:-12.0906,0,-14.4426	0/1:83:49,34:49:1747:34:1220:-84.6207,0,-101.488	0/1:43:27,16:27:972:16:572:-38.4885,0,-53.0283	0/1:18:10,8:10:360:8:288:-20.7104,0,-19.4809	0/0:140:140,0:140:5020:0:0:0,-42.1442,-357.137	0/1:38:11,27:11:396:27:968:-75.7975,0,-17.5142	0/0:127:127,0:127:4556:0:0:0,-38.2308,-316.644	0/1:247:132,115:132:4748:115:4124:-293.791,0,-245.373	0/1:100:50,50:50:1796:50:1788:-130.796,0,-100.294	0/0:101:100,1:100:3596:1:36:0,-26.8126,-256.974	1/1:2:0,2:0:0:2:72:-6.8237,-0.60206,0	0/1:124:78,46:78:2800:46:1652:-111.025,0,-158.343	0/0:139:139,0:139:4996:0:0:0,-41.8432,-362.374	0/1:228:147,81:147:5280:81:2899:-190.355,0,-289.234	0/1:79:50,29:50:1800:29:1040:-69.3096,0,-97.9722	0/1:40:21,19:21:756:19:684:-49.1831,0,-39.9466	0/0:36:36,0:36:1296:0:0:0,-10.8371,-90.1897	0/0:78:78,0:78:2804:0:0:0,-23.4803,-191.433	0/0:20:20,0:20:712:0:0:0,-6.0206,-52.3184	0/1:58:33,25:33:1180:25:888:-62.6362,0,-68.2166	0/1:40:24,16:24:864:16:572:-39.4919,0,-50.9488	0/1:14:8,6:8:288:6:212:-15.135,0,-15.8847	0/1:40:20,20:20:720:20:716:-52.4706,0,-36.9816	0/1:39:16,23:16:576:23:807:-60.854,0,-28.3628	0/0:137:137,0:137:4912:0:0:0,-41.2411,-337.421	0/0:47:47,0:47:1692:0:0:0,-14.1484,-115.658
chr11	28750304	.	CTTCCG	TTCCCA,CTTCCA	142069	PASS	AB=0.546452,0.446964;ABP=79.8728,103.205;AC=139,49;AF=0.739362,0.260638;AN=188;AO=7041,1853;CIGAR=1X1M1X2M1X,5M1X;DP=8956;DPB=8956;DPRA=64.8768,0.917877;EPP=15119.1,3992.08;EPPR=0;GTI=5;LEN=6,1;MEANALT=2.17391,2.54717;MQM=28.5559,49.5375;MQMR=0;NS=94;NUMALT=2;ODDS=0.391549;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=248270,66447;QR=0;RO=0;RPL=20,4;RPP=15119.1,3992.08;RPPR=0;RPR=7021,1849;RUN=1,1;SAF=7041,1853;SAP=15292.3,4026.75;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:45:0,45,0:0:0:45,0:1591,0:-117.294,-13.5464,0,-117.294,-13.5464,-117.294	1/1:149:0,147,1:0:0:147,1:5132,36:-375.331,-44.2514,0,-372.399,-41.2479,-372.098	1/2:187:0,95,91:0:0:95,91:3353,3268:-483.035,-265.32,-236.722,-217.819,0,-190.425	1/2:252:0,144,104:0:0:144,104:5099,3729:-610.235,-302.083,-258.734,-308.28,0,-276.973	1/2:87:0,57,30:0:0:57,30:2017,1080:-211.842,-88.0241,-70.8654,-124.147,0,-115.116	1/2:35:0,19,16:0:0:19,16:673,576:-90.8838,-47.262,-41.5424,-43.9488,0,-39.1324	1/1:176:0,176,0:0:0:176,0:6228,0:-432.208,-52.9813,0,-432.208,-52.9813,-432.208	1/1:139:0,139,0:0:0:139,0:4925,0:-359.029,-41.8432,0,-359.029,-41.8432,-359.029	1/2:43:0,18,25:0:0:18,25:627,900:-113.992,-73.4463,-68.0277,-40.8606,0,-33.3348	1/1:86:0,84,0:0:0:84,0:2961,0:-205.79,-25.2865,0,-205.79,-25.2865,-205.79	1/2:24:0,11,13:0:0:11,13:390,468:-61.288,-38.066,-34.7547,-23.5304,0,-19.6171	1/1:47:0,47,0:0:0:47,0:1660,0:-122.252,-14.1484,0,-122.252,-14.1484,-122.252	1/2:29:0,17,12:0:0:17,12:599,428:-71.916,-35.1755,-30.058,-37.0624,0,-33.4501	1/1:37:0,37,0:0:0:37,0:1294,0:-91.9425,-11.1381,0,-91.9425,-11.1381,-91.9425	1/1:38:0,38,0:0:0:38,0:1346,0:-92.9227,-11.4391,0,-92.9227,-11.4391,-92.9227	1/1:35:0,34,0:0:0:34,0:1177,0:-84.9098,-10.235,0,-84.9098,-10.235,-84.9098	1/2:34:0,12,22:0:0:12,22:429,792:-92.5645,-64.7856,-61.1732,-28.0938,0,-21.4712	1/2:20:0,16,4:0:0:16,4:568,144:-49.2522,-12.033,-7.21651,-37.5639,0,-36.3598	1/1:16:0,16,0:0:0:16,0:567,0:-41.3771,-4.81648,0,-41.3771,-4.81648,-41.3771	1/1:280:0,279,0:0:0:279,0:9876,0:-682.891,-83.9874,0,-682.891,-83.9874,-682.891	1/2:102:0,51,50:0:0:51,50:1802,1788:-256.873,-144.974,-129.621,-111.887,0,-96.8353	1/1:205:0,203,0:0:0:203,0:7143,0:-492.84,-61.1091,0,-492.84,-61.1091,-492.84	1/2:83:0,58,24:0:0:58,24:2040,864:-194.382,-70.2575,-52.7978,-124.279,0,-117.055	1/1:117:0,108,9:0:0:108,9:3808,324:-269.853,-32.5112,0,-243.534,-5.8395,-240.824	1/1:66:0,65,0:0:0:65,0:2299,0:-163.312,-19.567,0,-163.312,-19.567,-163.312	1/2:275:0,139,133:0:0:139,133:4873,4756:-678.17,-384.289,-342.446,-293.971,0,-253.934	1/2:147:0,82,65:0:0:82,65:2899,2332:-371.234,-189.578,-164.893,-181.979,0,-162.412	1/2:15:0,10,5:0:0:10,5:359,180:-37.2327,-14.9198,-11.9095,-22.6449,0,-21.1397	1/2:397:0,195,198:0:0:195,198:6868,7108:-989.551,-574.962,-516.261,-414.663,0,-355.059	1/2:134:0,63,70:0:0:63,70:2234,2499:-341.656,-202.279,-183.314,-139.523,0,-118.45	1/1:165:0,160,3:0:0:160,3:5639,108:-390.369,-48.1648,0,-381.608,-39.3111,-380.705	1/2:3:0,1,2:0:0:1,2:36,72:-8.41828,-6.20573,-5.9047,-2.52005,0,-1.91799	1/1:12:0,12,0:0:0:12,0:414,0:-29.9873,-3.61236,0,-29.9873,-3.61236,-29.9873	2/2:1:0,0,1:0:0:0,1:0,36:-3.59142,-3.59142,-3.59142,-0.30103,-0.30103,0	1/2:7:0,1,6:0:0:1,6:36,212:-19.8873,-17.5847,-17.2837,-2.60173,0,-0.795554	1/1:9:0,9,0:0:0:9,0:311,0:-23.6535,-2.70927,0,-23.6535,-2.70927,-23.6535	1/1:114:0,114,0:0:0:114,0:4020,0:-279.11,-34.3174,0,-279.11,-34.3174,-279.11	1/1:223:0,221,0:0:0:221,0:7789,0:-554.368,-66.5276,0,-554.368,-66.5276,-554.368	1/2:19:0,5,14:0:0:5,14:178,504:-52.8845,-41.3852,-39.88,-11.8071,0,-7.59268	1/1:4:0,4,0:0:0:4,0:144,0:-10.438,-1.20412,0,-10.438,-1.20412,-10.438	1/2:262:0,147,115:0:0:147,115:5190,4107:-657.458,-333.217,-288.966,-324.562,0,-289.944	1/1:19:0,19,0:0:0:19,0:676,0:-46.4412,-5.71957,0,-46.4412,-5.71957,-46.4412	1/1:174:0,173,0:0:0:173,0:6090,0:-434.141,-52.0782,0,-434.141,-52.0782,-434.141	1/1:29:0,29,0:0:0:29,0:1031,0:-72.4671,-8.72987,0,-72.4671,-8.72987,-72.4671	1/1:23:0,23,0:0:0:23,0:797,0:-56.4791,-6.92369,0,-56.4791,-6.92369,-56.4791	1/1:119:0,119,0:0:0:119,0:4216,0:-290.715,-35.8226,0,-290.715,-35.8226,-290.715	1/2:113:0,61,52:0:0:61,52:2146,1872:-292.434,-152.562,-134.2,-140.198,0,-124.545	1/1:248:0,246,0:0:0:246,0:8670,0:-600.874,-74.0534,0,-600.874,-74.0534,-600.874	1/1:156:0,155,0:0:0:155,0:5466,0:-378.004,-46.6597,0,-378.004,-46.6597,-378.004	1/2:116:0,63,53:0:0:63,53:2190,1885:-285.955,-152.6,-133.635,-133.67,0,-117.715	1/1:193:0,191,0:0:0:191,0:6752,0:-466.974,-57.4967,0,-466.974,-57.4967,-466.974	1/1:9:0,9,0:0:0:9,0:322,0:-22.4093,-2.70927,0,-22.4093,-2.70927,-22.4093	1/1:327:0,327,0:0:0:327,0:11495,0:-844.962,-98.4368,0,-844.962,-98.4368,-844.962	1/1:49:0,49,0:0:0:49,0:1747,0:-118.851,-14.7505,0,-118.851,-14.7505,-118.851	1/2:9:0,4,5:0:0:4,5:140,180:-24.1258,-15.0154,-13.8113,-9.4297,0,-7.92455	1/1:131:0,131,0:0:0:131,0:4621,0:-331.213,-39.4349,0,-331.213,-39.4349,-331.213	1/1:37:0,37,0:0:0:37,0:1301,0:-90.9087,-11.1381,0,-90.9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chr11	28752340	.	CTGTT	ATGTT,ATGTA	164056	PASS	AB=0.481519,0.511598;ABP=14.6481,7.59403;AC=139,47;AF=0.747312,0.252688;AN=186;AO=5792,2026;CIGAR=1X4M,1X3M1X;DP=7885;DPB=7905.4;DPRA=0,1.21578;EPP=12580.2,4393.73;EPPR=7.35324;GTI=0;LEN=1,5;MEANALT=2.25806,2.6;MQM=59.2479,53.3435;MQMR=60;NS=93;NUMALT=2;ODDS=4.38272;PAIRED=0,0;PAIREDR=0;PAO=21.5,71;PQA=408,2436;PQR=18;PRO=10.5;QA=205468,69899;QR=71;RO=2;RPL=5791,2025;RPP=12571.5,4393.73;RPPR=7.35324;RPR=1,1;RUN=1,1;SAF=5791,2026;SAP=12571.5,4402.41;SAR=1,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:11:0,11,0:0:0:11,0:384,0:-34.8687,-3.31133,0,-34.8687,-3.31133,-34.8687	1/1:61:0,61,0:0:0:61,0:2146,0:-193.33,-18.3628,0,-193.33,-18.3628,-193.33	1/2:78:0,33,45:0:0:33,45:1165,1545:-219.851,-125.064,-115.13,-94.8177,0,-81.2714	1/2:249:0,111,138:0:0:111,138:3883,4738:-697.572,-381.946,-348.531,-315.666,0,-274.123	1/2:34:0,17,17:0:0:17,17:593,592:-96.1273,-47.9475,-42.83,-48.1773,0,-43.0598	1/2:70:0,42,28:0:0:42,28:1508,980:-202.747,-79.7403,-67.097,-123.302,0,-114.873	1/1:112:0,111,1:0:0:111,1:3920,36:-352.574,-33.4143,0,-350.065,-30.5917,-349.764	1/1:118:0,118,0:0:0:118,0:4171,0:-374.73,-35.5215,0,-374.73,-35.5215,-374.73	1/2:196:0,100,96:0:0:100,96:3520,3316:-553.296,-267.249,-237.146,-286.045,0,-257.146	1/1:67:0,66,1:0:0:66,1:2340,28:-210.566,-19.868,0,-208.364,-17.3859,-208.063	1/2:41:0,23,18:0:0:23,18:812,622:-116.409,-50.4046,-43.4809,-66.0101,0,-60.5916	1/1:103:0,100,0:0:0:100,0:3554,0:-319.578,-30.103,0,-319.578,-30.103,-319.578	1/2:95:0,48,47:0:0:48,47:1720,1641:-273.498,-133.268,-118.819,-140.583,0,-126.435	1/1:32:0,31,0:0:0:31,0:1074,0:-96.7111,-9.33193,0,-96.7111,-9.33193,-96.7111	1/1:63:0,63,0:0:0:63,0:2232,0:-201.133,-18.9649,0,-201.133,-18.9649,-201.133	1/1:55:0,55,0:0:0:55,0:1936,0:-174.452,-16.5567,0,-174.452,-16.5567,-174.452	1/2:26:0,12,14:0:0:12,14:424,479:-72.6643,-38.3322,-34.7198,-34.3233,0,-30.1089	1/2:38:0,18,20:0:0:18,20:644,691:-108.419,-55.9468,-50.5283,-52.7675,0,-46.7469	1/1:21:0,21,0:0:0:21,0:744,0:-67.0855,-6.32163,0,-67.0855,-6.32163,-67.0855	1/1:128:0,124,2:0:0:124,2:4399,72:-395.659,-37.3277,0,-389.788,-31.4048,-389.186	1/2:180:0,92,88:0:0:92,88:3250,3040:-510.892,-246.509,-218.814,-264.418,0,-237.927	1/1:92:0,87,2:0:0:87,2:3108,67:-279.447,-26.1896,0,-274.023,-20.7806,-273.421	1/2:78:0,33,45:0:0:33,45:1164,1555:-220.998,-126.305,-116.371,-95.042,0,-81.4956	1/1:47:0,45,1:0:0:45,1:1597,34:-143.719,-13.5464,0,-140.965,-10.7262,-140.663	1/1:69:0,69,0:0:0:69,0:2395,0:-215.171,-20.7711,0,-215.171,-20.7711,-215.171	1/2:277:0,132,145:0:0:132,145:4680,5022:-788.736,-407.49,-367.754,-381.237,0,-337.588	1/2:243:0,115,125:0:0:115,125:4085,4264:-677.397,-344.813,-310.195,-332.626,0,-294.998	1/2:37:0,19,18:0:0:19,18:684,635:-107.431,-51.6166,-45.897,-55.8196,0,-50.4011	1/2:201:0,104,97:0:0:104,97:3691,3403:-577.109,-276.718,-245.41,-300.407,0,-271.207	1/2:113:0,60,50:0:0:60,50:2144,1709:-312.366,-137.564,-119.503,-174.855,0,-159.803	1/1:101:0,100,0:0:0:100,0:3584,0:-322.342,-30.103,0,-322.342,-30.103,-322.342	1/2:5:0,3,2:0:0:3,2:104,72:-14.6705,-6.22497,-5.32188,-8.79971,0,-8.19765	1/1:13:0,13,0:0:0:13,0:464,0:-42.0929,-3.91339,0,-42.0929,-3.91339,-42.0929	1/2:4:0,2,2:0:0:2,2:72,63:-11.2719,-5.37439,-4.77233,-6.23466,0,-5.6326	1/2:8:0,3,5:0:0:3,5:108,175:-23.3683,-14.5521,-13.649,-9.17208,0,-7.66693	1/1:27:0,27,0:0:0:27,0:964,0:-86.9235,-8.12781,0,-86.9235,-8.12781,-86.9235	1/1:207:0,205,0:0:0:205,0:7309,0:-657.488,-61.7112,0,-657.488,-61.7112,-657.488	1/1:72:0,71,0:0:0:71,0:2535,0:-227.909,-21.3731,0,-227.909,-21.3731,-227.909	1/2:37:0,18,19:0:0:18,19:644,670:-106.075,-53.5696,-48.151,-52.5116,0,-46.7921	.:.:.:.:.:.:.:.	1/2:100:0,41,58:0:0:41,58:1445,1966:-276.266,-158.636,-146.294,-117.712,0,-100.252	1/1:21:0,21,0:0:0:21,0:756,0:-68.3534,-6.32163,0,-68.3534,-6.32163,-68.3534	1/1:113:0,110,1:0:0:110,1:3906,36:-351.295,-33.1133,0,-348.363,-30.1403,-348.062	1/1:81:0,81,0:0:0:81,0:2859,0:-257.206,-24.3834,0,-257.206,-24.3834,-257.206	1/1:57:0,55,0:0:0:55,0:1926,0:-173.257,-16.5567,0,-173.257,-16.5567,-173.257	1/1:145:0,140,0:0:0:140,0:4972,0:-446.896,-42.1442,0,-446.896,-42.1442,-446.896	1/2:114:0,51,63:0:0:51,63:1812,2163:-322.644,-175.171,-159.818,-147.763,0,-128.798	1/1:135:0,133,0:0:0:133,0:4741,0:-425.875,-40.037,0,-425.875,-40.037,-425.875	1/1:72:0,72,0:0:0:72,0:2539,0:-228.388,-21.6742,0,-228.388,-21.6742,-228.388	1/2:110:0,54,56:0:0:54,56:1917,1929:-312.043,-155.852,-139.596,-156.188,0,-139.331	1/1:66:0,64,2:0:0:64,2:2279,58:-205.016,-19.2659,0,-200.414,-14.3723,-199.812	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:79:0,78,0:0:0:78,0:2757,0:-248.045,-23.4803,0,-248.045,-23.4803,-248.045	1/1:55:0,55,0:0:0:55,0:1976,0:-178.101,-16.5567,0,-178.101,-16.5567,-178.101	1/2:8:0,5,3:0:0:5,3:176,108:-23.4647,-9.14098,-7.63583,-14.6799,0,-13.7768	1/1:174:0,173,1:0:0:173,1:6144,32:-552.105,-52.0782,0,-549.528,-49.1819,-549.227	1/1:41:0,41,0:0:0:41,0:1467,0:-132.325,-12.3422,0,-132.325,-12.3422,-132.325	1/2:5:0,2,3:0:0:2,3:72,90:-13.3882,-7.49027,-6.88821,-6.23371,0,-5.33062	1/1:7:0,7,0:0:0:7,0:252,0:-23.028,-2.10721,0,-23.028,-2.10721,-23.028	1/2:62:0,38,22:0:0:38,22:1355,758:-171.802,-61.3873,-49.9482,-110.44,0,-103.817	1/1:86:0,81,2:0:0:81,2:2875,70:-258.525,-24.3834,0,-252.833,-18.6728,-252.231	1/2:7:0,5,2:0:0:5,2:180,66:-20.3714,-5.6628,-4.15765,-15.0469,0,-14.4449	1/2:184:0,83,101:0:0:83,101:2956,3486:-522.788,-281.853,-256.867,-240.98,0,-210.576	1/1:216:0,212,3:0:0:212,3:7543,108:-678.497,-63.8184,0,-669.692,-55.021,-668.789	1/2:42:0,24,18:0:0:24,18:844,622:-118.796,-50.3721,-43.1474,-68.7691,0,-63.3506	1/2:89:0,44,44:0:0:44,44:1541,1504:-246.87,-121.545,-108.3,-125.359,0,-112.113	1/1:175:0,174,1:0:0:174,1:6199,35:-557.235,-52.3792,0,-554.389,-49.1837,-554.088	1/1:79:0,78,1:0:0:78,1:2794,34:-251.334,-23.4803,0,-248.578,-20.3841,-248.277	1/2:28:0,12,16:0:0:12,16:432,549:-79.5369,-44.2765,-40.6641,-35.3352,0,-30.5187	1/2:39:0,15,24:0:0:15,24:529,832:-110.451,-67.3873,-62.8718,-43.0716,0,-35.8469	1/2:42:0,21,21:0:0:21,21:748,693:-116.671,-55.6916,-49.37,-60.9705,0,-54.6488	1/2:11:0,6,5:0:0:6,5:212,170:-31.0583,-13.7857,-11.9795,-17.281,0,-15.7759	1/1:140:0,139,0:0:0:139,0:4909,0:-441.176,-41.8432,0,-441.176,-41.8432,-441.176	1/2:64:0,24,40:0:0:24,40:864,1382:-182.015,-111.564,-104.339,-70.8047,0,-58.7635	1/1:129:0,127,0:0:0:127,0:4470,0:-401.141,-38.2308,0,-401.141,-38.2308,-401.141	1/2:90:0,35,54:0:0:35,54:1224,1869:-251.416,-151.841,-141.305,-99.6516,0,-83.396	1/2:56:0,30,25:0:0:30,25:1080,860:-157.095,-68.9789,-59.948,-88.1544,0,-80.6287	1/1:76:0,76,0:0:0:76,0:2686,0:-241.922,-22.8783,0,-241.922,-22.8783,-241.922	1/2:6:0,2,4:0:0:2,4:72,130:-16.6549,-10.7763,-10.1743,-6.22607,0,-5.02195	1/2:106:0,47,58:0:0:47,58:1672,1989:-296.664,-160.405,-146.256,-136.108,0,-118.648	1/1:86:0,86,0:0:0:86,0:3028,0:-272.672,-25.8886,0,-272.672,-25.8886,-272.672	1/2:250:0,130,114:0:0:130,114:4617,3954:-695.836,-320.308,-281.174,-375.564,0,-341.246	1/2:73:0,37,34:0:0:37,34:1320,1183:-203.58,-95.9723,-84.8342,-107.638,0,-97.4027	1/2:50:0,26,24:0:0:26,24:928,837:-143.937,-68.2776,-60.4508,-76.0115,0,-68.7868	1/1:51:0,50,0:0:0:50,0:1777,0:-159.652,-15.0515,0,-159.652,-15.0515,-159.652	1/1:151:1,146,1:1:35:146,1:5193,33:-463.995,-41.0946,0,-461.629,-41.2803,-464.176	1/1:28:0,27,0:0:0:27,0:935,0:-84.2314,-8.12781,0,-84.2314,-8.12781,-84.2314	1/2:85:0,42,43:0:0:42,43:1483,1500:-241.73,-121.006,-108.363,-120.957,0,-108.012	1/2:90:0,39,48:0:0:39,48:1396,1650:-247.132,-133.292,-121.552,-113.867,0,-99.4176	1/2:28:0,15,11:0:0:15,11:536,370:-73.4612,-29.7424,-25.227,-43.7549,0,-40.4436	1/2:75:0,38,37:0:0:38,37:1352,1300:-215.663,-105.483,-94.0442,-110.195,0,-99.0564	1/2:99:1,38,60:1:36:38,60:1334,2084:-274.39,-166.3,-157.799,-105.472,0,-90.3476	1/1:148:0,147,0:0:0:147,0:5225,0:-469.747,-44.2514,0,-469.747,-44.2514,-469.747	1/1:141:0,141,0:0:0:141,0:5020,0:-451.603,-42.4452,0,-451.603,-42.4452,-451.603
chr11	28752368	.	T	G	145241	PASS	AB=0.486409;ABP=11.9233;AC=141;AF=0.758065;AN=186;AO=8488;CIGAR=1X;DP=11372;DPB=11372;DPRA=41.192;EPP=18373.7;EPPR=6211.33;GTI=1;LEN=1;MEANALT=1.05435;MQM=34.3435;MQMR=40.3362;NS=93;NUMALT=1;ODDS=0.549936;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=298568;QR=102954;RO=2879;RPL=7;RPP=18373.7;RPPR=6202.67;RPR=8481;RUN=1;SAF=0;SAP=18434.5;SAR=8488;SRF=1;SRP=6246;SRR=2878;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:892:-65.9378,-7.52575,0	1/1:162:0,162:0:0:162:5736:-432.081,-48.7669,0	0/1:107:60,47:60:2127:47:1644:-95.0354,0,-153.051	0/1:288:146,142:146:5240:142:4927:-318.041,0,-363.978	0/1:79:43,36:43:1544:36:1287:-76.8359,0,-108.74	0/1:62:30,32:30:1076:32:1095:-66.4574,0,-73.7287	1/1:177:1,176:1:36:176:6203:-504.022,-50.1587,0	1/1:193:0,193:0:0:193:6808:-517.035,-58.0988,0	0/1:94:49,45:49:1764:45:1612:-94.4267,0,-123.84	1/1:70:0,70:0:0:70:2463:-200.994,-21.0721,0	0/1:128:59,68:59:2115:68:2394:-157.861,0,-144.126	1/1:107:0,107:0:0:107:3721:-284.39,-32.2102,0	0/1:116:58,58:58:2063:58:2037:-121.045,0,-145.169	1/1:160:0,160:0:0:160:5611:-446.807,-48.1648,0	1/1:95:0,95:0:0:95:3316:-268.862,-28.5979,0	1/1:95:0,95:0:0:95:3373:-265.9,-28.5979,0	0/1:135:66,69:66:2372:69:2409:-143.51,0,-166.421	0/1:91:41,50:41:1472:50:1773:-107.084,0,-101.127	1/1:77:0,77:0:0:77:2680:-203.323,-23.1793,0	1/1:215:0,215:0:0:215:7563:-614.713,-64.7215,0	0/1:210:107,103:107:3832:103:3635:-224.137,0,-264.033	1/1:120:0,120:0:0:120:4240:-357.09,-36.1236,0	0/1:120:54,66:54:1919:66:2320:-146.266,0,-127.405	1/1:139:8,131:8:288:131:4610:-342.451,-16.4341,0	1/1:100:0,100:0:0:100:3541:-280.894,-30.103,0	0/1:586:298,288:298:10673:288:10221:-678.511,0,-735.628	0/1:205:88,117:88:3148:117:4145:-264.773,0,-210.209	0/1:67:38,29:38:1351:29:1007:-61.0785,0,-97.9486	0/1:324:158,166:158:5652:166:5829:-391.49,0,-386.92	0/1:176:101,75:101:3602:75:2612:-153.743,0,-257.967	1/1:178:3,175:3:108:175:6163:-492.35,-43.8374,0	.:.:.:.:.:.:.:.	1/1:9:0,9:0:0:9:316:-24.9462,-2.70927,0	0/1:7:1,6:1:36:6:201:-13.7876,0,-1.39549	1/1:3:0,3:0:0:3:108:-8.55271,-0.90309,0	1/1:6:0,6:0:0:6:212:-15.7702,-1.80618,0	1/1:330:0,329:0:0:329:11506:-963.933,-99.0389,0	1/1:176:0,176:0:0:176:6202:-489.378,-52.9813,0	0/1:109:62,47:62:2208:47:1632:-92.6438,0,-159.052	1/1:5:0,5:0:0:5:180:-13.5277,-1.50515,0	0/1:147:76,71:76:2732:71:2531:-155.301,0,-193.168	1/1:46:0,46:0:0:46:1633:-128.557,-13.8474,0	1/1:115:1,114:1:36:114:4032:-313.68,-31.0598,0	1/1:167:0,167:0:0:167:5848:-481.911,-50.272,0	1/1:111:0,111:0:0:111:3835:-314.892,-33.4143,0	1/1:141:1,140:1:36:140:4883:-404.77,-38.8718,0	0/1:59:34,25:34:1220:25:887:-48.953,0,-88.9197	1/1:172:0,172:0:0:172:6028:-495.848,-51.7772,0	1/1:144:0,144:0:0:144:5075:-414.116,-43.3483,0	0/1:129:72,57:72:2580:57:2020:-128.496,0,-185.013	1/1:146:0,146:0:0:146:5136:-432.971,-43.9504,0	1/1:4:0,4:0:0:4:144:-12.2064,-1.20412,0	1/1:141:0,141:0:0:141:5012:-379.782,-42.4452,0	1/1:65:0,65:0:0:65:2328:-194.571,-19.567,0	0/1:7:6,1:6:216:1:36:-0.947328,0,-17.1576	1/1:114:0,114:0:0:114:4049:-316.001,-34.3174,0	1/1:40:0,39:0:0:39:1392:-113.482,-11.7402,0	0/1:5:4,1:4:144:1:36:-1.88245,0,-10.7148	1/1:17:0,17:0:0:17:600:-51.3512,-5.11751,0	0/1:102:59,43:59:2120:43:1511:-88.4413,0,-152.588	1/1:221:3,218:3:108:218:7675:-614.045,-56.7817,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.74595	0/1:224:113,111:113:4041:111:3934:-263.058,0,-280.088	1/1:207:4,203:4:144:203:7132:-570.417,-49.4346,0	0/1:49:25,24:25:892:24:815:-50.4967,0,-63.3326	0/1:68:43,25:43:1511:25:868:-50.783,0,-110.041	1/1:177:1,176:1:36:176:6199:-499.029,-49.8016,0	1/1:91:2,89:2:72:89:3142:-250.68,-20.7804,0	0/1:66:48,18:48:1712:18:622:-29.6982,0,-127.233	0/1:127:71,56:71:2536:56:2003:-112.837,0,-180.051	0/1:155:82,72:82:2918:72:2553:-168.346,0,-202.858	0/1:31:16,15:16:567:15:501:-31.2376,0,-40.4518	1/1:118:0,118:0:0:118:4134:-309.092,-35.5215,0	0/1:72:34,38:34:1208:38:1347:-79.8005,0,-83.5326	1/1:239:0,239:0:0:239:8422:-665.159,-71.9462,0	0/1:127:58,69:58:2065:69:2441:-161.982,0,-139.726	0/1:118:45,73:45:1616:73:2586:-157.93,0,-105.695	1/1:57:0,57:0:0:57:2000:-150.857,-17.1587,0	1/1:3:0,3:0:0:3:108:-8.55271,-0.90309,0	0/1:101:49,52:49:1755:52:1836:-116.048,0,-120.658	1/1:128:0,128:0:0:128:4549:-341.265,-38.5318,0	0/1:169:86,82:86:3080:82:2899:-184.695,0,-215.022	0/1:164:87,77:87:3101:77:2663:-169.082,0,-218.276	0/1:91:45,46:45:1620:46:1578:-101.358,0,-112.281	1/1:158:0,158:0:0:158:5544:-453.295,-47.5627,0	1/1:226:1,225:1:36:225:7894:-641.195,-64.5521,0	1/1:70:0,70:0:0:70:2440:-181.83,-21.0721,0	0/1:131:69,62:69:2464:62:2118:-120.077,0,-173.516	0/1:109:46,63:46:1631:63:2234:-134.779,0,-108.277	0/1:97:51,46:51:1832:46:1609:-98.3008,0,-128.524	0/1:195:100,95:100:3592:95:3317:-204.071,0,-250.273	0/1:108:72,36:72:2563:36:1248:-70.4768,0,-188.015	1/1:102:0,102:0:0:102:3591:-293.665,-30.7051,0	1/1:152:1,151:1:36:151:5326:-433.139,-42.1831,0
chr11	28758962	.	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chr11	28759068	.	G	A	33487.1	PASS	AB=0.484656;ABP=10.7403;AC=48;AF=0.255319;AN=188;AO=1841;CIGAR=1X;DP=7652;DPB=7652;DPRA=1.04496;EPP=3194.79;EPPR=10019.5;GTI=2;LEN=1;MEANALT=1.03846;MQM=59.9522;MQMR=59.9821;NS=94;NUMALT=1;ODDS=3.0028;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=65431;QR=206436;RO=5808;RPL=1743;RPP=3194.79;RPPR=10027.3;RPR=98;RUN=1;SAF=0;SAP=4000.69;SAR=1841;SRF=1;SRP=12606.2;SRR=5807;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:57:57,0:57:2010:0:0:0,-17.1587,-181.172	0/0:77:77,0:77:2713:0:0:0,-23.1793,-244.328	0/1:185:114,71:114:4028:71:2519:-171.272,0,-307.02	0/1:220:121,99:121:4295:99:3505:-249.435,0,-320.504	0/1:70:41,29:41:1459:29:1023:-71.3096,0,-110.533	0/1:15:12,3:12:428:3:104:-5.18736,0,-34.3434	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.029	0/1:69:31,38:31:1108:38:1359:-101.824,0,-79.2599	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.793	0/1:47:23,24:23:820:24:864:-63.9342,0,-59.9741	0/0:93:93,0:93:3293:0:0:0,-27.9958,-296.588	0/1:49:27,22:27:959:22:788:-56.4928,0,-71.8749	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:62:62,0:62:2183:0:0:0,-18.6639,-196.734	0/1:28:13,15:13:468:15:532:-39.7842,0,-34.0308	0/1:31:12,19:12:415:19:676:-51.8361,0,-28.3484	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:168:167,1:167:5933:1:36:0,-46.9748,-530.484	0/1:125:78,47:78:2771:47:1658:-111.878,0,-212.003	0/0:115:115,0:115:4107:0:0:0,-34.6184,-369.815	0/1:49:23,26:23:820:26:921:-68.4547,0,-59.372	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/0:108:108,0:108:3854:0:0:0,-32.5112,-347.055	0/1:181:103,78:103:3661:78:2760:-194.149,0,-275.208	0/1:234:113,121:113:4035:121:4316:-318.176,0,-292.897	0/1:23:14,9:14:500:9:324:-22.5822,0,-38.4125	0/1:256:110,146:110:3898:146:5192:-390.357,0,-273.953	0/1:83:47,36:47:1680:36:1284:-90.8774,0,-126.502	0/0:71:71,0:71:2527:0:0:0,-21.3731,-227.682	0/1:5:2,3:2:72:3:100:-7.82529,0,-5.33157	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:10:6,4:6:203:4:144:-10.3033,0,-15.5909	0/0:18:18,0:18:632:0:0:0,-5.41854,-57.2068	0/0:145:145,0:145:5169:0:0:0,-43.6493,-465.351	0/0:71:71,0:71:2508:0:0:0,-21.3731,-225.971	0/1:50:21,29:21:743:29:1022:-77.2394,0,-52.1418	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:103:58,45:58:2051:45:1607:-113.914,0,-153.853	0/0:29:28,1:28:1004:1:36:0,-5.13159,-87.0776	0/0:172:172,0:172:6131:0:0:0,-51.7772,-551.893	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/0:97:97,0:97:3450:0:0:0,-29.1999,-310.713	0/1:115:52,63:52:1850:63:2244:-167.605,0,-132.16	0/0:162:162,0:162:5757:0:0:0,-48.7669,-517.692	0/0:90:90,0:90:3199:0:0:0,-27.0927,-288.134	0/1:126:60,66:60:2139:66:2368:-175.448,0,-154.848	0/0:110:110,0:110:3905:0:0:0,-33.1133,-351.621	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:129:129,0:129:4596:0:0:0,-38.8329,-413.804	0/0:61:61,0:61:2163:0:0:0,-18.3628,-194.937	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:214:214,0:214:7655:0:0:0,-64.4204,-688.986	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:59:34,25:34:1186:25:883:-62.0267,0,-89.2825	0/0:79:78,1:78:2769:1:36:0,-20.1831,-245.852	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:220:100,119:100:3533:119:4188:-310.749,0,-251.896	0/0:137:137,0:137:4881:0:0:0,-41.2411,-439.443	0/1:44:22,22:22:788:22:792:-58.3604,0,-57.9995	0/1:130:65,65:65:2328:65:2294:-167.587,0,-170.646	0/0:146:146,0:146:5198:0:0:0,-43.9504,-467.961	0/0:172:171,1:171:6052:1:36:0,-48.1789,-541.191	0/1:23:12,11:12:432:11:381:-27.6969,0,-32.2975	0/1:43:23,20:23:796:20:695:-49.9248,0,-59.0107	0/1:31:19,12:19:663:12:432:-29.8893,0,-50.6615	0/1:15:11,4:11:384:4:144:-8.79817,0,-30.3792	0/0:84:83,1:83:2941:1:36:0,-21.6882,-261.326	0/1:86:46,40:46:1627:40:1420:-102.209,0,-120.83	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.832	0/1:204:104,100:104:3702:100:3572:-260.278,0,-271.973	0/1:30:21,9:21:743:9:324:-20.475,0,-58.1624	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:129:60,67:60:2144:67:2388:-176.587,0,-154.637	0/0:129:129,0:129:4547:0:0:0,-38.8329,-409.211	0/1:227:125,102:125:4435:102:3619:-257.582,0,-330.991	0/1:34:22,12:22:784:12:432:-28.9862,0,-60.6489	0/1:55:24,31:24:860:31:1103:-83.0232,0,-61.1652	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/0:106:106,0:106:3749:0:0:0,-31.9092,-337.61	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:70:28,42:28:968:42:1508:-114.873,0,-66.3566	0/1:81:47,34:47:1676:34:1207:-84.5518,0,-126.744	0/1:34:14,20:14:504:20:711:-54.0806,0,-35.4631	0/1:91:44,47:44:1580:47:1668:-123.012,0,-115.098	0/1:67:27,40:27:956:40:1424:-108.288,0,-66.1867	0/0:103:103,0:103:3672:0:0:0,-31.0061,-330.685	0/0:82:82,0:82:2901:0:0:0,-24.6845,-261.323
chr11	28775461	.	G	A	177391	PASS	AB=0.48251;ABP=19.9491;AC=143;AF=0.760638;AN=188;AO=8556;CIGAR=1X;DP=11881;DPB=11881;DPRA=0;EPP=18582.1;EPPR=7192.76;GTI=3;LEN=1;MEANALT=1.14894;MQM=59.9648;MQMR=59.9894;NS=94;NUMALT=1;ODDS=3.0005;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=305566;QR=118526;RO=3311;RPL=8556;RPP=18582.1;RPPR=7192.76;RPR=0;RUN=1;SAF=0;SAP=18582.1;SAR=8556;SRF=0;SRP=7192.76;SRR=3311;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:81:0,81:0:0:81:2893:-260.605,-24.3834,0	1/1:93:0,93:0:0:93:3312:-298.294,-27.9958,0	0/1:176:95,81:95:3412:81:2900:-208.255,0,-254.312	0/1:490:231,258:231:8248:258:9234:-683.612,0,-594.92	0/1:42:22,20:22:773:20:716:-52.1245,0,-57.2462	0/1:57:21,36:21:741:36:1292:-99.4251,0,-49.8529	1/1:90:0,90:0:0:90:3202:-288.401,-27.0927,0	1/1:117:1,116:1:36:116:4095:-365.133,-31.6222,0	0/1:148:78,69:78:2792:69:2455:-176.741,0,-207.057	1/1:78:0,78:0:0:78:2785:-250.889,-23.4803,0	0/1:76:39,37:39:1387:37:1317:-95.9516,0,-102.25	1/1:161:0,160:0:0:160:5744:-516.863,-48.1648,0	0/1:119:55,64:55:1980:64:2296:-170.707,0,-142.652	1/1:107:0,107:0:0:107:3817:-343.725,-32.2102,0	1/1:103:0,103:0:0:103:3681:-331.492,-31.0061,0	1/1:92:0,92:0:0:92:3300:-297.218,-27.6948,0	0/1:41:26,15:26:913:15:540:-36.5943,0,-70.1418	0/1:50:30,20:30:1080:20:720:-50.0773,0,-82.4618	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:94:0,94:0:0:94:3369:-303.424,-28.2968,0	0/1:255:133,121:133:4780:121:4318:-312.121,0,-353.682	1/1:63:0,63:0:0:63:2230:-200.961,-18.9649,0	0/1:152:91,61:91:3237:61:2180:-150.71,0,-245.795	1/1:103:7,96:7:252:96:3440:-286.783,-7.97713,0	1/1:103:0,103:0:0:103:3677:-331.132,-31.0061,0	0/1:327:183,143:183:6525:143:5147:-365.021,0,-488.988	0/1:490:249,241:249:8916:241:8595:-626.04,0,-654.918	0/1:65:38,27:38:1360:27:972:-68.231,0,-103.134	0/1:452:227,225:227:8117:225:7979:-582.066,0,-594.48	0/1:150:69,81:69:2476:81:2885:-214.731,0,-177.939	1/1:156:1,155:1:36:155:5513:-491.922,-43.3624,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	1/1:254:1,253:1:32:253:9039:-810.192,-73.2623,0	1/1:129:0,129:0:0:129:4595:-413.712,-38.8329,0	0/1:79:37,42:37:1328:42:1504:-111.873,0,-96.0409	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:195:97,98:97:3461:98:3501:-256.587,0,-253	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:107:1,106:1:36:106:3814:-339.857,-28.6119,0	1/1:90:0,90:0:0:90:3240:-291.82,-27.0927,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:106:0,106:0:0:106:3769:-339.404,-31.9092,0	0/1:145:93,52:93:3344:52:1845:-122.679,0,-257.527	1/1:235:1,234:1:36:234:8333:-746.372,-67.1438,0	1/1:127:0,126:0:0:126:4496:-404.597,-37.9298,0	0/1:226:117,108:117:4185:108:3884:-281.661,0,-308.739	1/1:125:1,124:1:36:124:4426:-394.911,-34.0305,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:170:0,170:0:0:170:6078:-547.119,-51.1751,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	1/1:226:0,226:0:0:226:8029:-722.633,-68.0328,0	1/1:78:0,78:0:0:78:2769:-249.447,-23.4803,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:121:53,68:53:1904:68:2444:-183.79,0,-135.213	1/1:133:0,132:0:0:132:4725:-425.036,-39.736,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:259:150,109:150:5380:109:3901:-273.301,0,-406.174	1/1:267:1,266:1:36:266:9510:-852.258,-76.7767,0	0/1:78:38,40:38:1368:40:1406:-103.353,0,-99.9405	0/1:119:68,51:68:2432:51:1813:-127.627,0,-183.313	1/1:191:1,190:1:36:190:6793:-607.82,-53.8985,0	1/1:211:3,208:3:108:208:7415:-657.231,-53.4422,0	0/1:70:26,44:26:923:44:1569:-120.428,0,-62.3147	0/1:93:39,54:39:1392:54:1936:-146.521,0,-97.5832	0/1:60:28,32:28:1004:32:1148:-85.568,0,-72.6141	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	1/1:208:1,206:1:36:206:7370:-659.82,-58.9998,0	0/1:115:63,51:63:2256:51:1821:-129.582,0,-168.716	1/1:206:0,206:0:0:206:7309:-657.862,-62.0122,0	0/1:299:137,161:137:4924:161:5773:-429.764,0,-353.39	0/1:100:58,42:58:2088:42:1485:-103.84,0,-158.087	1/1:95:0,95:0:0:95:3381:-304.505,-28.5979,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:135:70,64:70:2520:64:2296:-166.203,0,-186.353	1/1:147:0,147:0:0:147:5247:-472.367,-44.2514,0	0/1:430:204,225:204:7297:225:8049:-594.917,0,-527.278	0/1:71:40,31:40:1436:31:1116:-79.3786,0,-108.165	0/1:115:55,60:55:1963:60:2149:-159.059,0,-142.326	1/1:70:0,70:0:0:70:2467:-222.123,-21.0721,0	1/1:206:2,204:2:72:204:7301:-650.298,-55.1755,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:103:54,49:54:1940:49:1752:-126.958,0,-143.87	0/1:104:59,45:59:2116:45:1616:-114.423,0,-159.402	0/1:69:35,34:35:1260:34:1209:-88.3431,0,-92.9344	0/1:129:71,58:71:2548:58:2084:-148.997,0,-190.737	0/1:107:76,31:76:2712:31:1097:-66.8278,0,-212.103	1/1:218:0,217:0:0:217:7740:-696.412,-65.3235,0	1/1:167:0,167:0:0:167:5973:-537.675,-50.272,0
chr11	28813857	.	A	G	56290.5	PASS	AB=0.336593;ABP=738.226;AC=131;AF=0.704301;AN=186;AO=3102;CIGAR=1X;DP=8685;DPB=8685;DPRA=0.251359;EPP=6738.92;EPPR=12106.8;GTI=34;LEN=1;MEANALT=1.04348;MQM=54.0825;MQMR=59.9602;NS=93;NUMALT=1;ODDS=1.28025;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110936;QR=199627;RO=5578;RPL=3102;RPP=6738.92;RPPR=12106.8;RPR=0;RUN=1;SAF=0;SAP=6738.92;SAR=3102;SRF=0;SRP=12115.5;SRR=5578;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:17:0,17:0:0:17:612:-55.2685,-5.11751,0	1/1:19:0,19:0:0:19:680:-60.1922,-5.71957,0	0/1:112:68,44:68:2425:44:1580:-107.95,0,-184.781	0/1:130:80,50:80:2857:50:1781:-119.937,0,-218.196	0/1:32:29,3:29:1040:3:108:-0.427924,0,-84.2814	0/1:18:16,2:16:576:2:68:-0.938823,0,-46.7564	1/1:16:0,16:0:0:16:576:-52.0531,-4.81648,0	1/1:56:0,56:0:0:56:2000:-179.532,-16.8577,0	0/1:67:50,17:50:1792:17:608:-34.7403,0,-140.903	1/1:52:0,52:0:0:52:1865:-167.735,-15.6536,0	0/1:64:35,29:35:1252:29:1040:-74.3564,0,-93.7192	1/1:61:0,61:0:0:61:2183:-195.489,-18.3628,0	0/1:49:24,25:24:856:25:872:-63.3474,0,-62.6106	1/1:41:0,41:0:0:41:1464:-131.59,-12.3422,0	1/1:47:0,47:0:0:47:1668:-150.111,-14.1484,0	1/1:60:0,60:0:0:60:2144:-192.386,-18.0618,0	0/1:43:25,18:25:896:18:648:-45.3158,0,-68.0161	0/1:32:21,11:21:756:11:396:-25.8103,0,-58.7343	1/1:22:0,22:0:0:22:792:-71.3924,-6.62266,0	1/1:58:0,58:0:0:58:2084:-187.505,-17.4597,0	0/1:122:88,34:88:3160:34:1216:-72.0298,0,-247.899	1/1:20:0,20:0:0:20:720:-64.9696,-6.0206,0	0/1:106:90,16:90:3209:16:576:-20.1439,0,-257.123	1/1:37:1,36:1:36:36:1290:-112.49,-7.53984,0	1/1:15:0,15:0:0:15:540:-48.8636,-4.51545,0	0/1:220:171,49:171:6094:49:1756:-91.6807,0,-482.334	0/1:174:107,66:107:3836:66:2368:-160.304,0,-292.998	0/1:15:5,10:5:180:10:360:-28.1824,0,-12.0366	0/1:219:147,72:147:5276:72:2576:-166.037,0,-409.049	0/1:112:90,22:90:3220:22:792:-37.7649,0,-256.307	1/1:44:0,44:0:0:44:1571:-141.307,-13.2453,0	0/0:750:748,1:748:26803:1:36:0,-222.162,-2407.97	1/1:14:1,13:1:36:13:468:-38.8012,-0.616145,0	0/0:594:592,2:592:21197:2:72:0,-171.992,-1900.36	0/0:693:688,5:688:24617:5:180:0,-192.101,-2198.03	1/1:7:0,7:0:0:7:248:-22.609,-2.10721,0	1/1:141:0,141:0:0:141:5055:-453.891,-42.4452,0	1/1:38:0,38:0:0:38:1356:-122.047,-11.4391,0	0/1:95:83,12:83:2980:12:428:-9.94714,0,-239.834	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	0/1:61:38,23:38:1368:23:824:-56.0064,0,-105.058	1/1:24:0,24:0:0:24:864:-77.9765,-7.22472,0	1/1:31:0,31:0:0:31:1104:-99.0321,-9.33193,0	1/1:57:0,57:0:0:57:2035:-182.922,-17.1587,0	1/1:40:0,40:0:0:40:1431:-128.993,-12.0412,0	1/1:58:0,58:0:0:58:2076:-186.903,-17.4597,0	0/1:75:58,17:58:2088:17:597:-31.1592,0,-165.613	1/1:66:0,66:0:0:66:2360:-212.398,-19.868,0	1/1:31:0,31:0:0:31:1097:-98.7988,-9.33193,0	0/1:76:45,31:45:1601:31:1107:-76.8233,0,-121.5	1/1:31:0,31:0:0:31:1112:-100.304,-9.33193,0	.:.:.:.:.:.:.:.	1/1:51:0,51:0:0:51:1828:-163.298,-15.3525,0	1/1:17:0,17:0:0:17:600:-54.1472,-5.11751,0	0/0:253:247,4:247:8828:4:144:0,-62.6379,-781.226	1/1:76:1,75:1:36:75:2684:-237.472,-19.28,0	1/1:8:0,8:0:0:8:288:-26.2485,-2.40824,0	0/0:586:583,3:583:20853:3:108:0,-166.333,-1866.17	1/1:2:0,2:0:0:2:72:-6.83481,-0.60206,0	0/1:64:37,27:37:1309:27:964:-67.6655,0,-98.8436	1/1:70:0,70:0:0:70:2511:-225.371,-21.0721,0	0/0:360:360,0:360:12901:0:0:0,-108.371,-1160.9	0/1:128:54,74:54:1932:74:2648:-199.912,0,-135.625	1/1:35:3,32:3:108:32:1148:-93.4811,-0.46088,0	0/1:55:41,14:41:1476:14:500:-28.7175,0,-116.58	0/1:69:58,11:58:2073:11:396:-15.1857,0,-166.068	1/1:28:0,28:0:0:28:1008:-90.9545,-8.42884,0	1/1:72:0,72:0:0:72:2573:-231.609,-21.6742,0	0/1:142:115,27:115:4119:27:968:-44.4334,0,-328.147	0/1:65:37,28:37:1328:28:1004:-70.3125,0,-100.242	0/1:26:6,20:6:216:20:720:-57.1702,0,-11.9637	0/0:101:97,4:97:3463:4:144:0,-17.1,-298.578	1/1:60:0,59:0:0:59:2115:-189.494,-17.7608,0	0/1:56:22,34:22:788:34:1211:-91.9698,0,-54.3871	1/1:62:0,62:0:0:62:2224:-199.395,-18.6639,0	0/1:81:39,42:39:1381:42:1500:-110.685,0,-99.0979	0/1:89:77,12:77:2756:12:432:-12.279,0,-221.49	1/1:86:0,86:0:0:86:3068:-275.161,-25.8886,0	0/0:158:151,7:151:5411:7:252:0,-24.5917,-464.041	0/1:52:32,20:32:1152:20:716:-47.4367,0,-88.3366	1/1:36:0,36:0:0:36:1271:-114.288,-10.8371,0	0/1:90:58,32:58:2073:32:1139:-75.4427,0,-159.743	0/1:40:12,28:12:432:28:1008:-78.8099,0,-27.18	0/1:74:43,31:43:1544:31:1112:-77.8622,0,-116.977	1/1:22:0,22:0:0:22:788:-70.9979,-6.62266,0	1/1:85:3,82:3:108:82:2935:-252.272,-15.5124,0	1/1:24:0,24:0:0:24:855:-76.8931,-7.22472,0	0/1:53:34,19:34:1220:19:669:-44.2159,0,-94.1522	0/1:56:30,26:30:1043:26:936:-67.2542,0,-77.3184	0/1:42:23,19:23:828:19:684:-49.1557,0,-62.2009	0/1:109:68,41:68:2431:41:1467:-99.2569,0,-186.228	0/1:57:46,11:46:1631:11:396:-18.789,0,-129.919	1/1:108:0,108:0:0:108:3842:-344.252,-32.5112,0	1/1:74:1,73:1:36:73:2588:-229.313,-18.6779,0
chr11	28813867	.	TG	CA,CG	180651	PASS	AB=0.345287,0.653761;ABP=658.122,650.084;AC=131,55;AF=0.704301,0.295699;AN=186;AO=3124,5490;CIGAR=2X,1X1M;DP=8624;DPB=8630;DPRA=0.252443,2.9859;EPP=6786.69,11924.4;EPPR=9.52472;GTI=10;LEN=2,1;MEANALT=1.61957,2.0566;MQM=54.0464,59.9701;MQMR=60;NS=93;NUMALT=2;ODDS=12425;PAIRED=0,0;PAIREDR=0;PAO=6,6;PQA=210,210;PQR=0;PRO=0;QA=110465,196029;QR=106;RO=3;RPL=3124,5490;RPP=6786.69,11924.4;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=6786.69,11924.4;SAR=3124,5490;SRF=0;SRP=9.52472;SRR=3;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18,0:0:0:18,0:636,0:-57.432,-5.41854,0,-57.432,-5.41854,-57.432	1/1:18:0,18,0:0:0:18,0:635,0:-57.0653,-5.41854,0,-57.0653,-5.41854,-57.0653	1/2:113:0,46,67:0:0:46,67:1648,2385:-328.293,-194.737,-180.889,-133.912,0,-113.743	1/2:128:0,51,77:0:0:51,77:1787,2737:-366.962,-223.357,-208.004,-143.955,0,-120.776	1/2:32:0,3,29:0:0:3,29:108,1040:-93.983,-85.1845,-84.2814,-9.15779,0,-0.427923	1/2:18:0,2,16:0:0:2,16:66,576:-52.6256,-47.3585,-46.7564,-5.59707,0,-0.780586	1/1:16:0,16,0:0:0:16,0:550,0:-49.7345,-4.81648,0,-49.7345,-4.81648,-49.7345	1/1:56:0,56,0:0:0:56,0:1978,0:-177.554,-16.8577,0,-177.554,-16.8577,-177.554	1/2:66:0,17,49:0:0:17,49:594,1744:-190.399,-142.223,-137.106,-48.5261,0,-33.7756	1/1:51:0,51,0:0:0:51,0:1784,0:-160.476,-15.3525,0,-160.476,-15.3525,-160.476	1/2:63:0,29,34:0:0:29,34:1027,1205:-181.889,-98.5189,-89.789,-83.7235,0,-73.4885	1/1:63:0,63,0:0:0:63,0:2242,0:-200.612,-18.9649,0,-200.612,-18.9649,-200.612	1/2:50:0,26,24:0:0:26,24:930,848:-144.513,-69.4149,-61.5882,-75.4517,0,-68.227	1/1:39:0,38,1:0:0:38,1:1351,36:-121.088,-11.4391,0,-118.15,-8.1419,-117.849	1/1:47:0,47,0:0:0:47,0:1680,0:-151.12,-14.1484,0,-151.12,-14.1484,-151.12	1/1:60:0,60,0:0:0:60,0:2126,0:-190.747,-18.0618,0,-190.747,-18.0618,-190.747	1/2:41:0,18,23:0:0:18,23:626,820:-117.772,-67.1988,-61.7803,-50.9236,0,-43.9999	1/2:32:0,11,21:0:0:11,21:396,752:-93.461,-61.6846,-58.3733,-32.132,0,-25.8103	1/1:22:0,22,0:0:0:22,0:779,0:-70.229,-6.62266,0,-70.229,-6.62266,-70.229	1/1:59:0,59,0:0:0:59,0:2083,0:-187.425,-17.7608,0,-187.425,-17.7608,-187.425	1/2:117:0,35,82:0:0:35,82:1240,2921:-338.664,-238.44,-227.903,-100.577,0,-75.893	1/1:20:0,20,0:0:0:20,0:710,0:-64.1383,-6.0206,0,-64.1383,-6.0206,-64.1383	1/2:99:0,16,83:0:0:16,83:564,2973:-288.665,-242.815,-237.999,-46.2031,0,-21.2176	1/1:36:0,35,1:0:0:35,1:1258,36:-112.792,-10.5361,0,-109.855,-7.23881,-109.554	1/1:16:0,16,0:0:0:16,0:576,0:-52.0939,-4.81648,0,-52.0939,-4.81648,-52.0939	1/2:223:0,51,172:0:0:51,172:1819,6122:-647.152,-499.304,-483.951,-148.204,0,-96.4268	1/2:174:0,69,105:0:0:69,105:2427,3760:-504.147,-306.991,-286.22,-197.509,0,-165.901	1/2:15:0,10,5:0:0:10,5:347,180:-43.2086,-15.0469,-12.0366,-28.5171,0,-27.012	1/2:219:0,74,142:0:0:74,142:2621,5064:-625.8,-412.799,-390.523,-212.996,0,-170.249	1/2:114:0,23,91:0:0:23,91:802,3272:-332.417,-267.305,-260.382,-65.4615,0,-38.0678	1/1:44:0,44,0:0:0:44,0:1576,0:-141.756,-13.2453,0,-141.756,-13.2453,-141.756	2/2:741:2,1,737:2:70:1,737:36,26342:-2363.05,-2360.72,-2366.11,-216.214,-218.94,0	1/1:14:0,13,1:0:0:13,1:468,32:-42.0767,-3.91339,0,-39.5012,-1.01511,-39.2001	2/2:590:0,2,587:0:0:2,587:72,20973:-1886.64,-1880.78,-1880.18,-176.705,-170.927,0	2/2:679:0,4,674:0:0:4,674:142,24053:-2163.72,-2152.18,-2150.98,-202.894,-191.506,0	1/1:7:0,7,0:0:0:7,0:239,0:-21.7947,-2.10721,0,-21.7947,-2.10721,-21.7947	1/1:141:0,141,0:0:0:141,0:5010,0:-449.794,-42.4452,0,-449.794,-42.4452,-449.794	1/1:37:0,37,0:0:0:37,0:1282,0:-115.399,-11.1381,0,-115.399,-11.1381,-115.399	1/2:92:0,12,80:0:0:12,80:421,2856:-267.147,-233.196,-229.583,-34.2999,0,-10.2175	1/1:1:0,1,0:0:0:1,0:36,0:-3.59317,-0.30103,0,-3.59317,-0.30103,-3.59317	1/2:60:0,23,37:0:0:23,37:811,1328:-174.613,-108.684,-101.76,-66.2833,0,-55.1452	1/1:23:0,23,0:0:0:23,0:826,0:-74.5594,-6.92369,0,-74.5594,-6.92369,-74.5594	1/1:31:0,30,0:0:0:30,0:1074,0:-96.1636,-9.0309,0,-96.1636,-9.0309,-96.1636	1/1:57:0,57,0:0:0:57,0:2037,0:-183.043,-17.1587,0,-183.043,-17.1587,-183.043	1/1:40:0,40,0:0:0:40,0:1377,0:-124.141,-12.0412,0,-124.141,-12.0412,-124.141	1/1:58:0,58,0:0:0:58,0:2058,0:-185.284,-17.4597,0,-185.284,-17.4597,-185.284	1/2:77:0,18,59:0:0:18,59:644,2101:-223.782,-171.597,-166.178,-52.5411,0,-34.7803	1/1:65:0,65,0:0:0:65,0:2295,0:-206.567,-19.567,0,-206.567,-19.567,-206.567	1/1:31:0,31,0:0:0:31,0:1074,0:-96.8018,-9.33193,0,-96.8018,-9.33193,-96.8018	1/2:74:0,31,43:0:0:31,43:1105,1536:-215.439,-125.589,-116.257,-90.2068,0,-77.2626	1/1:31:0,31,0:0:0:31,0:1095,0:-98.7742,-9.33193,0,-98.7742,-9.33193,-98.7742	.:.:.:.:.:.:.:.	1/1:51:0,51,0:0:0:51,0:1832,0:-163.654,-15.3525,0,-163.654,-15.3525,-163.654	1/1:18:0,18,0:0:0:18,0:637,0:-57.474,-5.41854,0,-57.474,-5.41854,-57.474	2/2:249:0,4,245:0:0:4,245:144,8773:-789.183,-777.466,-776.262,-73.7524,-61.7215,0	1/1:76:0,76,0:0:0:76,0:2669,0:-239.896,-22.8783,0,-239.896,-22.8783,-239.896	1/1:8:0,8,0:0:0:8,0:277,0:-25.2483,-2.40824,0,-25.2483,-2.40824,-25.2483	2/2:579:0,3,576:0:0:3,576:108,20565:-1849.96,-1841.15,-1840.25,-173.39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chr11	28818132	.	ATTTCC	ATTCG,ATTCCC	139940	PASS	AB=0.543053,0.452596;ABP=54.8023,65.8021;AC=140,46;AF=0.752688,0.247312;AN=186;AO=5903,1476;CIGAR=1M1D3M1X,3M1X2M;DP=7409;DPB=6422.17;DPRA=0,0.85117;EPP=12076.7,2952.82;EPPR=5.18177;GTI=0;LEN=5,1;MEANALT=1.87097,2.24528;MQM=33.6249,56.897;MQMR=60;NS=93;NUMALT=2;ODDS=0.852717;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=207489,52539;QR=36;RO=1;RPL=5809,1442;RPP=12017.7,2919.59;RPPR=5.18177;RPR=94,34;RUN=1,1;SAF=5896,1472;SAP=12760.5,3173.45;SAR=7,4;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:62:0,59,0:0:0:59,0:2074,0:-153.195,-17.7608,0,-153.195,-17.7608,-153.195	1/1:77:0,77,0:0:0:77,0:2682,0:-203.446,-23.1793,0,-203.446,-23.1793,-203.446	1/2:118:0,67,51:0:0:67,51:2325,1828:-303.335,-149.155,-128.986,-154.508,0,-139.156	1/2:98:0,61,37:0:0:61,37:2169,1317:-266.005,-107.586,-89.2228,-158.762,0,-147.624	1/2:18:0,7,11:0:0:7,11:251,392:-49.814,-32.2918,-30.1846,-17.8512,0,-14.5398	1/2:53:0,24,28:0:0:24,28:834,1008:-137.287,-82.2736,-75.0489,-55.103,0,-46.6742	1/1:116:0,115,0:0:0:115,0:4094,0:-331.443,-34.6185,0,-331.443,-34.6185,-331.443	1/1:111:0,110,1:0:0:110,1:3848,36:-287.052,-33.1133,0,-284.118,-29.8198,-283.817	1/2:165:0,97,67:0:0:97,67:3414,2382:-414.644,-193.38,-164.181,-221.26,0,-201.091	1/1:94:0,93,0:0:0:93,0:3296,0:-263.65,-27.9958,0,-263.65,-27.9958,-263.65	1/2:34:0,18,16:0:0:18,16:640,576:-92.3333,-47.3445,-41.926,-45.3258,0,-40.5093	1/1:110:0,108,0:0:0:108,0:3762,0:-279.122,-32.5112,0,-279.122,-32.5112,-279.122	1/2:73:0,35,38:0:0:35,38:1195,1353:-190.829,-110.492,-99.956,-80.6573,0,-69.2181	1/1:50:0,50,0:0:0:50,0:1737,0:-136.27,-15.0515,0,-136.27,-15.0515,-136.27	1/1:81:0,81,0:0:0:81,0:2886,0:-232.59,-24.3834,0,-232.59,-24.3834,-232.59	1/1:60:0,60,0:0:0:60,0:2098,0:-165.111,-18.0618,0,-165.111,-18.0618,-165.111	1/2:40:0,18,21:0:0:18,21:637,748:-103.227,-60.8176,-55.399,-42.4975,0,-36.1759	1/2:39:0,26,13:0:0:26,13:930,468:-98.3226,-38.4977,-30.6709,-60.161,0,-56.2476	1/1:47:0,47,0:0:0:47,0:1650,0:-124.186,-14.1484,0,-124.186,-14.1484,-124.186	1/1:162:0,161,0:0:0:161,0:5720,0:-461.494,-48.4658,0,-461.494,-48.4658,-461.494	1/2:138:0,79,58:0:0:79,58:2756,2042:-359.14,-165.883,-142.101,-193.344,0,-175.885	1/1:89:0,89,0:0:0:89,0:3134,0:-260.861,-26.7917,0,-260.861,-26.7917,-260.861	1/2:111:1,58,52:1:36:58,52:2049,1850:-297.146,-147.674,-133.151,-146.815,0,-134.1	1/1:91:0,84,7:0:0:84,7:2943,248:-230.388,-25.2865,0,-210.192,-4.73954,-208.084	1/1:94:0,93,0:0:0:93,0:3279,0:-259.329,-27.9958,0,-259.329,-27.9958,-259.329	1/2:169:0,82,86:0:0:82,86:2890,3063:-466.601,-249.619,-224.934,-216.975,0,-191.087	1/2:196:0,116,80:0:0:116,80:4098,2860:-518.145,-233.267,-198.347,-285.214,0,-261.132	1/2:45:0,23,22:0:0:23,22:793,792:-120.851,-64.8123,-57.8886,-56.3708,0,-49.7482	1/2:260:0,153,106:0:0:153,106:5383,3770:-707.234,-306.865,-260.808,-400.354,0,-368.445	1/2:80:0,44,36:0:0:44,36:1550,1288:-211.226,-105.251,-92.0058,-106.306,0,-95.4694	1/1:57:0,53,4:0:0:53,4:1877,144:-151.245,-15.9546,0,-139.494,-3.84674,-138.289	1/2:7:0,4,3:0:0:4,3:144,108:-18.2331,-9.16729,-7.96317,-9.39407,0,-8.49098	1/1:24:0,24,0:0:0:24,0:850,0:-67.0172,-7.22472,0,-67.0172,-7.22472,-67.0172	1/2:8:0,2,6:0:0:2,6:71,212:-22.3211,-17.5954,-16.9933,-5.03648,0,-3.2303	1/2:9:0,3,6:0:0:3,6:108,216:-24.9429,-17.9639,-17.0609,-7.29399,0,-5.48781	1/1:16:0,16,0:0:0:16,0:560,0:-42.6375,-4.81648,0,-42.6375,-4.81648,-42.6375	1/1:204:0,202,0:0:0:202,0:7074,0:-590.345,-60.8081,0,-590.345,-60.8081,-590.345	1/1:115:0,114,0:0:0:114,0:3981,0:-311.853,-34.3174,0,-311.853,-34.3174,-311.853	1/2:58:0,23,34:0:0:23,34:809,1201:-150.432,-97.5271,-90.6034,-52.8954,0,-42.6604	1/1:1:0,1,0:0:0:1,0:35,0:-3.08764,-0.30103,0,-3.08764,-0.30103,-3.08764	1/2:77:0,34,42:0:0:34,42:1192,1508:-206.836,-122.938,-112.703,-83.9288,0,-71.2855	1/1:108:0,108,0:0:0:108,0:3806,0:-296.652,-32.5112,0,-296.652,-32.5112,-296.652	1/1:125:0,125,0:0:0:125,0:4396,0:-345.601,-37.6288,0,-345.601,-37.6288,-345.601	1/1:71:0,71,0:0:0:71,0:2494,0:-201.736,-21.3731,0,-201.736,-21.3731,-201.736	1/1:55:0,55,0:0:0:55,0:1961,0:-157.572,-16.5567,0,-157.572,-16.5567,-157.572	1/1:177:0,176,0:0:0:176,0:6214,0:-515.026,-52.9813,0,-515.026,-52.9813,-515.026	1/2:72:0,39,32:0:0:39,32:1379,1127:-182.487,-91.6156,-79.8755,-90.9788,0,-81.3458	1/1:140:0,140,0:0:0:140,0:4912,0:-395.239,-42.1442,0,-395.239,-42.1442,-395.239	1/1:111:0,111,0:0:0:111,0:3908,0:-317.32,-33.4143,0,-317.32,-33.4143,-317.32	1/2:44:0,26,18:0:0:26,18:904,648:-119.117,-53.2127,-45.3859,-66.246,0,-60.8275	1/1:128:0,128,0:0:0:128,0:4512,0:-374.813,-38.5318,0,-374.813,-38.5318,-374.813	1/1:4:0,4,0:0:0:4,0:144,0:-12.0108,-1.20412,0,-12.0108,-1.20412,-12.0108	1/1:99:0,99,0:0:0:99,0:3486,0:-259.615,-29.802,0,-259.615,-29.802,-259.615	1/1:44:0,44,0:0:0:44,0:1572,0:-129.536,-13.2453,0,-129.536,-13.2453,-129.536	1/2:26:0,16,10:0:0:16,10:568,352:-67.1109,-28.9782,-24.1617,-38.4638,0,-35.4535	1/1:138:0,138,0:0:0:138,0:4863,0:-381.444,-41.5421,0,-381.444,-41.5421,-381.444	1/1:39:0,39,0:0:0:39,0:1348,0:-1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chr11	28818213	.	T	C	36070	PASS	AB=0.494503;ABP=4.15622;AC=47;AF=0.25;AN=188;AO=2171;CIGAR=1X;DP=8827;DPB=8827;DPRA=1.14163;EPP=4717.28;EPPR=14445.5;GTI=0;LEN=1;MEANALT=1.05455;MQM=59.9129;MQMR=59.9877;NS=94;NUMALT=1;ODDS=0.956837;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77428;QR=237942;RO=6651;RPL=2171;RPP=4717.28;RPPR=14445.5;RPR=0;RUN=1;SAF=0;SAP=4717.28;SAR=2171;SRF=0;SRP=14445.5;SRR=6651;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:91:91,0:91:3257:0:0:0,-27.3937,-293.349	0/1:174:101,73:101:3624:73:2571:-179.257,0,-273.985	0/1:204:114,89:114:4073:89:3173:-224.324,0,-305.286	0/1:24:12,12:12:428:12:428:-31.6341,0,-31.6341	0/1:17:4,13:4:144:13:468:-37.3421,0,-8.19611	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:161:161,0:161:5743:0:0:0,-48.4658,-516.983	0/1:108:48,60:48:1724:60:2152:-161.419,0,-122.777	0/0:113:113,0:113:4064:0:0:0,-34.0164,-365.945	0/1:35:13,22:13:468:22:788:-60.7087,0,-31.9236	0/0:92:92,0:92:3281:0:0:0,-27.6948,-295.509	0/1:74:41,33:41:1472:33:1181:-84.3108,0,-110.5	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/0:82:82,0:82:2952:0:0:0,-24.6845,-265.913	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	0/1:27:16,11:16:576:11:396:-27.8549,0,-44.0472	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:134:134,0:134:4789:0:0:0,-40.338,-431.165	0/1:190:102,88:102:3653:88:3152:-226.709,0,-271.776	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/1:192:104,88:104:3744:88:3134:-224.486,0,-279.361	0/0:94:90,4:90:3217:4:140:0,-15.3522,-276.806	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/1:270:128,140:128:4577:140:5012:-370.174,0,-330.952	0/1:196:106,90:106:3812:90:3179:-227.279,0,-284.274	0/1:35:19,16:19:684:16:576:-41.6389,0,-51.3481	0/1:166:71,95:71:2533:95:3382:-254.622,0,-178.249	0/1:143:66,77:66:2323:77:2752:-204.875,0,-166.278	0/0:115:113,2:113:4037:2:72:0,-27.7817,-356.68	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:182:182,0:182:6544:0:0:0,-54.7875,-589.039	0/0:169:169,0:169:6045:0:0:0,-50.8741,-544.152	0/1:61:29,32:29:1040:32:1152:-85.6273,0,-75.5515	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:156:76,80:76:2728:80:2864:-211.037,0,-198.802	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:136:136,0:136:4872:0:0:0,-40.9401,-438.633	0/0:61:60,1:60:2152:1:36:0,-14.7646,-190.349	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/0:89:89,0:89:3191:0:0:0,-26.7917,-287.412	0/1:135:71,64:71:2548:64:2288:-165.543,0,-188.931	0/0:150:150,0:150:5342:0:0:0,-45.1545,-480.913	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/1:197:91,106:91:3272:106:3770:-280.195,0,-235.396	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:124:124,0:124:4444:0:0:0,-37.3277,-400.124	0/0:89:89,0:89:3173:0:0:0,-26.7917,-285.793	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:157:157,0:157:5636:0:0:0,-47.2617,-507.359	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:32:14,18:14:500:18:633:-47.6621,0,-35.7032	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:103:52,51:52:1857:51:1812:-131.651,0,-136.402	0/0:81:81,0:81:2893:0:0:0,-24.3834,-260.605	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:236:115,121:115:4109:121:4314:-316.917,0,-298.951	0/0:239:238,1:238:8505:1:36:0,-68.3479,-761.852	0/1:91:39,52:39:1404:52:1864:-140.646,0,-99.2655	0/1:72:41,31:41:1468:31:1092:-76.2121,0,-110.742	0/0:185:185,0:185:6621:0:0:0,-55.6905,-595.968	0/0:188:187,1:187:6693:1:36:0,-52.9954,-598.846	0/1:59:30,29:30:1076:29:1029:-75.1604,0,-79.3921	0/1:64:36,28:36:1296:28:1004:-71.4099,0,-97.678	0/1:38:21,17:21:752:17:612:-43.9743,0,-56.5671	0/1:38:22,16:22:788:16:564:-39.6512,0,-59.8057	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:95:48,47:48:1720:47:1680:-122.889,0,-126.488	0/0:177:177,0:177:6300:0:0:0,-53.2823,-567.09	0/1:206:115,89:115:4109:89:3177:-224.456,0,-308.296	0/1:66:34,32:34:1209:32:1137:-82.769,0,-89.238	0/0:131:130,1:130:4642:1:36:0,-35.8367,-414.342	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:118:67,51:67:2381:51:1820:-128.56,0,-179.025	0/0:133:132,1:132:4684:1:36:0,-36.4387,-418.119	0/1:153:86,67:86:3066:67:2377:-168.129,0,-230.108	0/1:71:30,41:30:1076:41:1461:-110.412,0,-75.7797	0/1:77:38,39:38:1368:39:1389:-102.128,0,-100.242	0/0:62:62,0:62:2190:0:0:0,-18.6639,-197.318	0/0:114:114,0:114:4069:0:0:0,-34.3174,-366.396	0/0:23:23,0:23:809:0:0:0,-6.92369,-73.1283	0/1:59:31,28:31:1112:28:1008:-73.2756,0,-82.6306	0/1:80:33,47:33:1184:47:1692:-128.484,0,-82.7859	0/1:39:17,22:17:612:22:792:-59.8655,0,-43.6733	0/1:97:50,47:50:1792:47:1682:-122.467,0,-132.363	0/1:80:26,54:26:932:54:1899:-147.1,0,-60.1165	0/0:162:162,0:162:5793:0:0:0,-48.7669,-521.483	0/0:118:117,1:117:4204:1:36:0,-31.9233,-374.941
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chr11	28962287	.	C	T	32936.6	PASS	AB=0.493323;ABP=4.54713;AC=47;AF=0.25;AN=188;AO=1977;CIGAR=1X;DP=8461;DPB=8461;DPRA=1.04632;EPP=4296.01;EPPR=14054.6;GTI=2;LEN=1;MEANALT=1.03846;MQM=59.4416;MQMR=59.7047;NS=94;NUMALT=1;ODDS=0.802075;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70850;QR=231493;RO=6475;RPL=0;RPP=4296.01;RPPR=14063.3;RPR=1977;RUN=1;SAF=1977;SAP=4296.01;SAR=0;SRF=6474;SRP=14054.6;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.59	0/0:141:141,0:141:5025:0:0:0,-42.4452,-452.367	0/1:127:81,46:81:2908:46:1647:-110.245,0,-223.654	0/1:183:80,103:80:2864:103:3696:-277.721,0,-202.896	0/1:60:30,30:30:1076:30:1072:-78.7182,0,-79.0895	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:85:83,2:83:2968:2:70:0,-18.9999,-260.755	0/0:208:206,0:206:7371:0:0:0,-62.0122,-662.982	0/1:74:51,23:51:1824:23:824:-52.1989,0,-142.161	0/0:126:126,0:126:4512:0:0:0,-37.9298,-406.197	0/1:56:27,29:27:968:29:1040:-77.0544,0,-70.5726	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.184	0/1:63:35,28:35:1238:28:996:-70.9814,0,-92.7551	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.215	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.609	0/0:36:36,0:36:1278:0:0:0,-10.8371,-115.32	0/1:57:30,27:30:1076:27:972:-70.6301,0,-79.9941	0/1:52:25,27:25:900:27:972:-72.1329,0,-65.6656	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.126	0/0:184:183,0:183:6576:0:0:0,-55.0885,-591.548	0/1:128:62,66:62:2208:66:2376:-175.524,0,-160.343	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.153	0/1:53:19,33:19:684:33:1188:-91.2155,0,-45.8725	0/0:116:110,6:110:3940:6:216:0,-15.129,-334.981	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.364	0/1:369:183,186:183:6532:186:6676:-488.485,0,-476.863	0/1:175:106,69:106:3776:69:2457:-168.681,0,-287.284	0/1:35:21,14:21:743:14:496:-34.4373,0,-56.6555	0/1:264:131,132:131:4696:132:4712:-344.052,0,-343.357	0/1:165:80,85:80:2860:85:3056:-225.575,0,-207.935	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.352	0/1:12:6,6:6:216:6:216:-16.1735,0,-16.1782	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72856	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:224:224,0:224:7991:0:0:0,-67.4307,-719.171	0/0:194:194,0:194:6940:0:0:0,-58.3998,-624.437	0/1:50:24,26:24:855:26:936:-68.6677,0,-62.2178	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:123:66,57:66:2368:57:2017:-144.73,0,-176.35	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2641	0/0:133:133,0:133:4748:0:0:0,-40.037,-427.462	0/0:88:87,0:87:3115:0:0:0,-26.1896,-280.326	0/0:68:67,0:67:2399:0:0:0,-20.169,-215.75	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.303	0/1:117:47,70:47:1680:70:2508:-190.544,0,-116.257	0/0:176:175,0:175:6260:0:0:0,-52.6802,-563.099	0/0:119:118,0:118:4211:0:0:0,-35.5215,-378.782	0/1:157:77,80:77:2760:80:2872:-211.445,0,-201.377	0/0:157:156,1:156:5568:1:36:0,-43.6644,-497.634	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9804	0/0:132:132,0:132:4697:0:0:0,-39.736,-422.875	0/0:28:28,0:28:984:0:0:0,-8.42884,-88.8697	0/1:24:12,12:12:428:12:432:-31.9965,0,-31.6341	0/0:105:105,0:105:3752:0:0:0,-31.6081,-337.842	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3107	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:44:22,22:22:776:22:788:-57.9949,0,-56.8991	0/0:84:84,0:84:2999:0:0:0,-25.2865,-270.142	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:253:145,108:145:5169:108:3868:-271.265,0,-389.024	0/0:221:216,5:216:7715:5:180:0,-49.9756,-677.673	0/1:82:28,54:28:1004:54:1944:-150.547,0,-65.9914	0/1:60:42,18:42:1504:18:648:-40.5831,0,-117.541	0/0:157:157,0:157:5608:0:0:0,-47.2617,-504.455	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:19:10,9:10:360:9:324:-23.7816,0,-27.0247	0/1:32:14,18:14:500:18:648:-48.9324,0,-35.7032	0/1:88:45,43:45:1603:43:1548:-113.121,0,-118.068	0/1:26:14,12:14:500:12:432:-31.3944,0,-37.507	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.231	0/1:90:43,47:43:1548:47:1680:-124.377,0,-112.519	0/0:117:117,0:117:4192:0:0:0,-35.2205,-377.417	0/0:166:166,0:166:5940:0:0:0,-49.971,-534.648	0/1:115:53,62:53:1904:62:2209:-164.051,0,-136.961	0/0:78:77,1:77:2752:1:36:0,-19.8821,-244.266	0/1:25:12,13:12:432:13:468:-34.9257,0,-31.6903	0/1:102:63,39:63:2248:39:1400:-95.5861,0,-171.799	0/0:101:101,0:101:3612:0:0:0,-30.404,-325.173	0/1:183:85,98:85:3040:98:3520:-261.864,0,-218.487	0/1:100:54,46:54:1928:46:1647:-118.396,0,-143.569	0/1:80:43,37:43:1544:37:1328:-95.7398,0,-115.171	0/0:100:100,0:100:3576:0:0:0,-30.103,-321.017	0/0:147:145,2:145:5188:2:72:0,-37.4147,-460.139	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.921	0/1:64:30,34:30:1076:34:1216:-90.4561,0,-77.8842	0/1:65:30,35:30:1080:35:1260:-94.1094,0,-77.9411	0/1:28:15,13:15:522:13:468:-34.0262,0,-38.8784	0/1:67:33,34:33:1176:34:1212:-89.0034,0,-85.9749	0/1:69:22,47:22:762:47:1679:-130.609,0,-48.1242	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.303	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.487
chr11	28962337	.	C	A	121677	PASS	AB=0.49669;ABP=3.36962;AC=142;AF=0.755319;AN=188;AO=6050;CIGAR=1X;DP=7973;DPB=7973;DPRA=0;EPP=13131.7;EPPR=4165.72;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.7187;MQMR=59.6046;NS=94;NUMALT=1;ODDS=0.586456;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209478;QR=65904;RO=1917;RPL=6050;RPP=13140.4;RPPR=4165.72;RPR=0;RUN=1;SAF=6049;SAP=13131.7;SAR=1;SRF=1917;SRP=4165.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1155:-104.255,-9.93399,0	1/1:130:0,130:0:0:130:4462:-401.752,-39.1339,0	0/1:119:44,75:44:1510:75:2538:-192.794,0,-100.326	0/1:179:104,75:104:3601:75:2557:-175.999,0,-270.4	0/1:59:31,28:31:1061:28:955:-68.4968,0,-78.0213	0/1:18:11,7:11:358:7:252:-17.6104,0,-27.1138	1/1:82:1,81:1:36:81:2830:-251.311,-21.0862,0	1/1:185:0,184:0:0:184:6408:-576.456,-55.3895,0	0/1:71:22,49:22:757:49:1723:-133.973,0,-47.0726	1/1:120:0,120:0:0:120:4135:-372.331,-36.1236,0	0/1:51:26,25:26:912:25:844:-60.9146,0,-67.0433	1/1:57:0,57:0:0:57:2018:-181.891,-17.1587,0	0/1:61:27,34:27:911:34:1185:-88.5875,0,-63.9251	1/1:69:0,69:0:0:69:2391:-214.783,-20.7711,0	1/1:59:0,59:0:0:59:2041:-183.958,-17.7608,0	1/1:35:0,35:0:0:35:1187:-107.126,-10.5361,0	0/1:52:26,26:26:880:26:907:-66.2908,0,-63.8515	0/1:48:23,25:23:807:25:870:-64.0324,0,-58.4997	1/1:35:0,35:0:0:35:1200:-108.298,-10.5361,0	1/1:172:1,171:1:36:171:5937:-530.849,-48.1789,0	0/1:126:65,61:65:2228:61:2134:-154.169,0,-162.819	1/1:101:1,100:1:36:100:3483:-310.064,-26.8058,0	0/1:52:33,19:33:1135:19:660:-44.0641,0,-86.7979	1/1:107:7,100:7:239:100:3455:-289.316,-10.3675,0	1/1:45:0,45:0:0:45:1566:-141.229,-13.5464,0	0/1:348:181,167:181:6269:167:5783:-415.833,0,-458.214	0/1:169:68,101:68:2326:101:3506:-264.762,0,-158.708	0/1:32:12,20:12:394:20:691:-52.8752,0,-26.144	0/1:248:124,122:124:4242:122:4243:-307.603,0,-307.575	0/1:161:83,78:83:2856:78:2701:-194.837,0,-208.791	1/1:103:0,103:0:0:103:3554:-320.035,-31.0061,0	0/1:11:6,5:6:212:5:162:-11.5875,0,-16.1116	1/1:13:0,13:0:0:13:447:-40.5577,-3.91339,0	0/1:7:5,2:5:163:2:72:-4.72856,0,-12.8842	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:212:0,212:0:0:212:7314:-658.316,-63.8184,0	1/1:174:0,173:0:0:173:5946:-534.87,-52.0782,0	0/1:44:24,20:24:796:20:691:-49.2641,0,-58.6663	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:122:57,65:57:1961:65:2262:-167.115,0,-140	1/1:27:0,27:0:0:27:936:-84.5511,-8.12781,0	1/1:121:0,121:0:0:121:4197:-377.907,-36.4246,0	1/1:80:0,80:0:0:80:2822:-254.215,-24.0824,0	1/1:64:0,64:0:0:64:2212:-199.219,-19.2659,0	1/1:46:0,46:0:0:46:1581:-142.572,-13.8474,0	0/1:109:67,42:67:2347:42:1445:-97.5254,0,-178.467	1/1:166:0,165:0:0:165:5678:-510.775,-49.67,0	1/1:112:0,112:0:0:112:3865:-348.023,-33.7154,0	0/1:156:81,75:81:2819:75:2584:-185.841,0,-206.979	1/1:149:0,149:0:0:149:5170:-465.437,-44.8535,0	1/1:10:0,10:0:0:10:329:-29.9274,-3.0103,0	1/1:121:0,120:0:0:120:4127:-371.252,-36.1236,0	1/1:27:0,27:0:0:27:918:-82.9273,-8.12781,0	0/1:23:12,11:12:412:11:379:-27.5169,0,-30.4856	1/1:97:0,97:0:0:97:3343:-301.074,-29.1999,0	1/1:27:0,27:0:0:27:919:-83.0139,-8.12781,0	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:43:21,22:21:719:22:750:-54.8654,0,-52.0786	1/1:81:0,81:0:0:81:2849:-256.649,-24.3834,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:240:105,135:105:3594:135:4676:-348.726,0,-251.417	1/1:204:5,199:5:180:199:6874:-602.058,-44.8581,0	0/1:79:53,26:53:1827:26:901:-57.6208,0,-140.919	0/1:51:17,34:17:583:34:1156:-88.9646,0,-37.435	1/1:150:0,150:0:0:150:5231:-470.706,-45.1545,0	1/1:30:0,30:0:0:30:1068:-96.4297,-9.0309,0	0/1:19:9,10:9:297:10:343:-25.481,0,-21.3288	0/1:32:18,14:18:625:14:487:-34.5262,0,-46.9395	0/1:85:42,43:42:1369:43:1498:-109.524,0,-97.9082	0/1:24:12,12:12:416:12:417:-30.637,0,-30.5469	1/1:53:0,53:0:0:53:1861:-167.767,-15.9546,0	0/1:87:46,41:46:1577:41:1400:-100.102,0,-116.013	1/1:110:0,110:0:0:110:3794:-341.62,-33.1133,0	1/1:155:0,155:0:0:155:5394:-485.582,-46.6597,0	0/1:106:59,47:59:2062:47:1642:-116.156,0,-153.921	1/1:74:1,73:1:21:73:2461:-219.587,-20.1763,0	0/1:25:13,12:13:447:12:411:-29.789,0,-32.917	0/1:93:36,57:36:1223:57:1983:-150.672,0,-82.3667	1/1:91:0,91:0:0:91:3150:-283.703,-27.3937,0	0/1:176:94,82:94:3264:82:2877:-206.135,0,-240.983	0/1:93:44,49:44:1493:49:1669:-122.374,0,-106.656	0/1:79:37,42:37:1267:42:1449:-106.921,0,-90.5427	1/1:101:0,101:0:0:101:3527:-316.612,-30.404,0	1/1:145:2,143:2:68:143:4972:-441.103,-37.1916,0	1/1:49:0,49:0:0:49:1702:-153.463,-14.7505,0	0/1:59:31,28:31:1067:28:971:-69.9381,0,-78.5535	0/1:62:34,28:34:1175:28:987:-70.4748,0,-87.3699	0/1:26:14,12:14:478:12:432:-31.3944,0,-35.5168	0/1:57:30,27:30:1039:27:946:-68.2911,0,-76.5953	0/1:65:45,20:45:1561:20:677:-41.6772,0,-121.201	1/1:68:0,68:0:0:68:2340:-210.774,-20.47,0	1/1:85:0,85:0:0:85:2969:-267.432,-25.5876,0
chr11	28962378	.	G	A	29700.3	PASS	AB=0.529749;ABP=28.4626;AC=48;AF=0.255319;AN=188;AO=1761;CIGAR=1X;DP=6940;DPB=6940;DPRA=0.929634;EPP=3826.97;EPPR=11242.6;GTI=0;LEN=1;MEANALT=1;MQM=53.6485;MQMR=59.9187;NS=94;NUMALT=1;ODDS=0.90823;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62754;QR=183954;RO=5176;RPL=1;RPP=3818.29;RPPR=11242.6;RPR=1760;RUN=1;SAF=1;SAP=3818.29;SAR=1760;SRF=0;SRP=11242.6;SRR=5176;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1759:0:0:0,-15.0515,-158.59	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/1:76:24,52:24:855:52:1850:-142.985,0,-54.3919	0/1:174:108,66:108:3848:66:2360:-159.707,0,-293.509	0/1:59:23,36:23:828:36:1292:-98.6528,0,-57.0833	0/1:29:9,20:9:320:20:720:-55.9798,0,-20.4125	0/0:78:78,0:78:2768:0:0:0,-23.4803,-249.36	0/0:84:83,1:83:2954:1:36:0,-21.6973,-262.504	0/1:95:35,60:35:1251:60:2152:-164.634,0,-84.2964	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.018	0/1:43:24,19:24:860:19:678:-47.5007,0,-64.7775	0/0:97:97,0:97:3413:0:0:0,-29.1999,-307.385	0/1:80:44,36:44:1561:36:1292:-92.0026,0,-116.697	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/0:79:79,0:79:2785:0:0:0,-23.7814,-250.889	0/0:59:59,0:59:2076:0:0:0,-17.7608,-187.106	0/1:17:5,12:5:180:12:416:-32.4852,0,-11.4346	0/1:30:13,17:13:468:17:612:-46.0876,0,-33.4205	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.261	0/0:303:303,0:303:10774:0:0:0,-91.2121,-969.522	0/1:140:57,83:57:2019:83:2944:-221.98,0,-139.838	0/0:107:107,0:107:3818:0:0:0,-32.2102,-343.817	0/1:95:26,69:26:918:69:2459:-192.595,0,-54.3374	0/1:38:31,7:31:1112:7:247:-10.9324,0,-88.9522	0/0:69:68,1:68:2407:1:27:0,-18.0713,-214.185	0/1:199:86,113:86:3073:113:4010:-300.81,0,-216.892	0/1:190:85,105:85:3037:105:3732:-276.958,0,-216.363	0/1:32:19,13:19:680:13:468:-32.7665,0,-51.8916	0/1:180:87,93:87:3091:93:3321:-244.416,0,-224.231	0/1:94:53,41:53:1892:41:1445:-101.374,0,-142.261	0/0:69:68,1:68:2416:1:36:0,-17.1754,-214.094	0/1:14:5,9:5:180:9:324:-25.2496,0,-12.3376	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:10:6,4:6:216:4:144:-10.0833,0,-16.7802	0/1:10:4,6:4:144:6:216:-16.7248,0,-10.3033	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:187:186,0:186:6595:0:0:0,-55.9916,-593.269	0/0:97:97,0:97:3475:0:0:0,-29.1999,-312.961	0/1:41:19,22:19:684:22:784:-58.3715,0,-49.5481	0/0:6:6,0:6:203:0:0:0,-1.80618,-18.6012	0/1:140:62,78:62:2200:78:2785:-207.474,0,-156.119	0/0:38:38,0:38:1345:0:0:0,-11.4391,-120.41	0/0:94:94,0:94:3310:0:0:0,-28.2968,-298.118	0/0:56:56,0:56:1991:0:0:0,-16.8577,-178.835	0/0:53:53,0:53:1881:0:0:0,-15.9546,-169.481	0/0:119:119,0:119:4213:0:0:0,-35.8226,-379.351	0/1:86:31,55:31:1116:55:1963:-149.412,0,-74.8631	0/0:127:126,1:126:4491:1:36:0,-34.6351,-400.137	0/0:68:68,0:68:2431:0:0:0,-20.47,-219.045	0/1:62:33,29:33:1169:29:1040:-74.2601,0,-86.8514	0/0:46:46,0:46:1621:0:0:0,-13.8474,-146.177	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	0/0:107:107,0:107:3789:0:0:0,-32.2102,-341.202	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.732	0/1:13:6,7:6:212:7:239:-17.7314,0,-15.5114	0/0:116:116,0:116:4107:0:0:0,-34.9195,-369.794	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:12:8,4:8:288:4:144:-9.69754,0,-22.655	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:58:30,28:30:1072:28:1004:-72.9538,0,-79.3327	0/0:92:92,0:92:3280:0:0:0,-27.6948,-295.421	0/1:5:3,2:3:108:2:72:-5.32664,0,-8.57002	0/1:180:73,107:73:2608:107:3801:-286.183,0,-180.783	0/0:108:107,1:107:3816:1:36:0,-28.9156,-340.04	0/1:29:22,7:22:792:7:252:-14.2628,0,-62.8712	0/1:59:23,36:23:824:36:1283:-97.8727,0,-56.7225	0/0:118:118,0:118:4203:0:0:0,-35.5215,-378.453	0/0:98:97,0:97:3455:0:0:0,-29.1999,-310.804	0/1:27:19,8:19:684:8:287:-17.7819,0,-53.7625	0/1:38:16,22:16:567:22:779:-58.8194,0,-39.9216	0/1:44:17,27:17:604:27:968:-74.0561,0,-41.4453	0/1:29:13,16:13:468:16:564:-42.25,0,-33.7298	0/0:111:111,0:111:3948:0:0:0,-33.4143,-355.503	0/1:88:46,42:46:1644:42:1508:-109.169,0,-121.747	0/0:86:86,0:86:3056:0:0:0,-25.8886,-274.491	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.535	0/1:112:47,65:47:1675:65:2324:-174.805,0,-117.321	0/0:44:43,1:43:1519:1:36:0,-9.65609,-133.413	0/1:6:2,4:2:72:4:144:-11.3736,0,-5.03054	0/1:82:42,40:42:1499:40:1427:-103.215,0,-110.519	0/0:59:59,0:59:2064:0:0:0,-17.7608,-186.027	0/1:116:66,50:66:2355:50:1781:-124.745,0,-177.289	0/1:51:28,23:28:1000:23:807:-57.4076,0,-74.9628	0/1:79:43,36:43:1496:36:1288:-92.3607,0,-110.125	0/0:42:42,0:42:1486:0:0:0,-12.6433,-134.033	0/0:125:124,1:124:4399:1:36:0,-34.0331,-392.298	0/0:29:28,0:28:991:0:0:0,-8.42884,-89.1439	0/1:74:31,43:31:1097:43:1535:-114.673,0,-76.7618	0/1:67:35,32:35:1213:32:1135:-82.0113,0,-89.2992	0/1:26:15,11:15:540:11:396:-28.1049,0,-41.1098	0/1:96:52,44:52:1810:44:1564:-110.886,0,-134.274	0/1:82:28,54:28:1000:54:1919:-147.913,0,-65.6309	0/0:105:105,0:105:3741:0:0:0,-31.6081,-336.89	0/0:100:100,0:100:3532:0:0:0,-30.103,-318.088
chr11	28962396	.	TTCA	CTCA,CTCG	149817	PASS	AB=0.458841,0.537593;ABP=52.5244,44.316;AC=140,48;AF=0.744681,0.255319;AN=188;AO=5133,1815;CIGAR=1X3M,1X2M1X;DP=6976;DPB=6976;DPRA=0,0.949059;EPP=11053.8,3900.92;EPPR=0;GTI=0;LEN=1,4;MEANALT=1.82979,2.22222;MQM=59.9421,53.524;MQMR=0;NS=94;NUMALT=2;ODDS=2.34747;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=183451,63947;QR=0;RO=0;RPL=5122,1811;RPP=11053.8,3909.57;RPPR=0;RPR=11,4;RUN=1,1;SAF=0,1;SAP=11149.2,3935.55;SAR=5133,1814;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50,0:0:0:50,0:1785,0:-160.931,-15.0515,0,-160.931,-15.0515,-160.931	1/1:60:0,59,0:0:0:59,0:2112,0:-190.117,-17.7608,0,-190.117,-17.7608,-190.117	1/2:82:0,24,58:0:0:24,58:864,2031:-234.558,-164.056,-156.831,-70.8578,0,-53.3981	1/2:176:0,106,70:0:0:106,70:3800,2484:-512.043,-202.198,-170.289,-310.2,0,-289.128	1/2:60:0,23,37:0:0:23,37:828,1320:-175.358,-107.796,-100.873,-67.9204,0,-56.7823	1/2:30:0,9,21:0:0:9,21:324,719:-84.9615,-58.5191,-55.8099,-26.7966,0,-20.475	1/1:75:0,75,0:0:0:75,0:2692,0:-242.524,-22.5773,0,-242.524,-22.5773,-242.524	1/1:84:0,83,1:0:0:83,1:2961,36:-266.363,-24.9855,0,-263.434,-21.6973,-263.133	1/2:99:0,34,64:0:0:34,64:1216,2268:-283.14,-183.985,-173.75,-99.1518,0,-79.8859	1/1:89:0,89,0:0:0:89,0:3154,0:-284.025,-26.7917,0,-284.025,-26.7917,-284.025	1/2:44:0,26,18:0:0:26,18:936,637:-128.131,-51.7535,-43.9268,-76.7323,0,-71.3137	1/1:97:0,97,0:0:0:97,0:3441,0:-309.901,-29.1999,0,-309.901,-29.1999,-309.901	1/2:80:0,42,37:0:0:42,37:1492,1302:-227.184,-105.604,-92.961,-121.679,0,-110.541	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/1:78:0,78,0:0:0:78,0:2796,0:-251.88,-23.4803,0,-251.88,-23.4803,-251.88	1/1:59:0,59,0:0:0:59,0:2096,0:-188.906,-17.7608,0,-188.906,-17.7608,-188.906	1/2:17:0,5,12:0:0:5,12:176,431:-49.5593,-35.2326,-33.7275,-14.6799,0,-11.0675	1/2:30:0,13,17:0:0:13,17:464,600:-86.8173,-48.9958,-45.0824,-38.1759,0,-33.0584	1/1:31:0,31,0:0:0:31,0:1112,0:-100.383,-9.33193,0,-100.383,-9.33193,-100.383	1/1:305:0,300,0:0:0:300,0:10702,0:-962.751,-90.309,0,-962.751,-90.309,-962.751	1/2:139:0,56,83:0:0:56,83:2012,2943:-403.336,-239.197,-222.34,-164.495,0,-139.51	1/1:107:0,107,0:0:0:107,0:3848,0:-346.514,-32.2102,0,-346.514,-32.2102,-346.514	1/2:96:0,26,70:0:0:26,70:932,2442:-274.589,-198.573,-190.746,-76.3721,0,-55.3	1/2:39:0,31,8:0:0:31,8:1107,275:-112.657,-22.3922,-13.0603,-90.6082,0,-88.2	1/1:72:0,72,0:0:0:72,0:2584,0:-232.807,-21.6742,0,-232.807,-21.6742,-232.807	1/2:199:0,86,113:0:0:86,113:3065,4013:-576.839,-327.005,-301.117,-250.189,0,-216.173	1/2:194:0,87,107:0:0:87,107:3094,3789:-559.443,-307.302,-281.112,-252.496,0,-220.285	1/2:33:0,19,14:0:0:19,14:684,498:-96.6347,-40.8254,-35.1058,-56.1661,0,-51.9517	1/2:179:0,84,95:0:0:84,95:3004,3323:-515.166,-270.215,-244.928,-245.305,0,-216.707	1/2:96:0,52,41:0:0:52,41:1855,1433:-267.282,-116.057,-100.404,-151.249,0,-138.907	1/1:69:0,67,1:0:0:67,1:2408,36:-216.675,-20.169,0,-213.74,-17.1741,-213.439	1/2:13:0,4,9:0:0:4,9:144,317:-37.8751,-26.1229,-24.9188,-12.1095,0,-9.40023	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:11:0,6,5:0:0:6,5:216,176:-32.0739,-14.4422,-12.636,-17.9843,0,-16.4792	1/2:10:0,4,6:0:0:4,6:144,212:-29.3209,-17.5682,-16.364,-12.1095,0,-10.3033	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:184:0,183,0:0:0:183,0:6553,0:-589.489,-55.0885,0,-589.489,-55.0885,-589.489	1/1:97:0,97,0:0:0:97,0:3487,0:-314.04,-29.1999,0,-314.04,-29.1999,-314.04	1/2:43:0,17,25:0:0:17,25:612,881:-121.297,-71.3574,-66.2399,-49.9361,0,-42.4103	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:141:0,62,79:0:0:62,79:2220,2785:-407.089,-226.044,-207.38,-181.401,0,-157.619	1/1:37:0,37,0:0:0:37,0:1322,0:-119.01,-11.1381,0,-119.01,-11.1381,-119.01	1/1:92:0,91,0:0:0:91,0:3268,0:-294.088,-27.3937,0,-294.088,-27.3937,-294.088	1/1:55:0,54,0:0:0:54,0:1925,0:-173.317,-16.2556,0,-173.317,-16.2556,-173.317	1/1:55:0,55,0:0:0:55,0:1946,0:-175.409,-16.5567,0,-175.409,-16.5567,-175.409	1/1:122:0,121,0:0:0:121,0:4325,0:-389.062,-36.4246,0,-389.062,-36.4246,-389.062	1/2:88:0,31,57:0:0:31,57:1112,2005:-252.661,-161.956,-152.624,-91.0594,0,-73.9007	1/1:126:0,125,1:0:0:125,1:4459,36:-400.849,-37.6288,0,-397.914,-34.3341,-397.613	1/1:66:0,66,0:0:0:66,0:2342,0:-211.036,-19.868,0,-211.036,-19.868,-211.036	1/2:62:0,33,29:0:0:33,29:1180,1033:-179.847,-83.6279,-73.6939,-96.5741,0,-87.8442	1/1:46:0,46,0:0:0:46,0:1656,0:-149.328,-13.8474,0,-149.328,-13.8474,-149.328	1/2:4:0,3,1:0:0:3,1:108,36:-12.1071,-3.29465,-2.39156,-9.17208,0,-8.87105	1/1:104:0,103,0:0:0:103,0:3704,0:-333.246,-31.0061,0,-333.246,-31.0061,-333.246	1/1:47:0,47,0:0:0:47,0:1678,0:-151.306,-14.1484,0,-151.306,-14.1484,-151.306	1/2:15:0,7,8:0:0:7,8:248,272:-42.526,-22.3159,-20.2087,-20.557,0,-18.1487	1/1:115:0,114,0:0:0:114,0:4066,0:-365.846,-34.3174,0,-365.846,-34.3174,-365.846	1/1:30:0,29,0:0:0:29,0:1021,0:-91.8407,-8.72987,0,-91.8407,-8.72987,-91.8407	1/2:12:0,8,4:0:0:8,4:288,143:-35.5149,-12.0138,-9.60555,-23.8592,0,-22.655	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:59:0,30,28:0:0:30,28:1072,998:-168.494,-81.0884,-72.0575,-87.4023,0,-78.9735	1/1:91:0,91,0:0:0:91,0:3248,0:-292.539,-27.3937,0,-292.539,-27.3937,-292.539	1/2:5:0,3,2:0:0:3,2:104,72:-14.6751,-6.22973,-5.32664,-8.79971,0,-8.19765	1/2:184:0,73,110:0:0:73,110:2613,3846:-524.229,-311.142,-289.167,-213.13,0,-180.017	1/1:105:0,104,1:0:0:104,1:3705,36:-333.292,-31.3071,0,-330.357,-28.0125,-330.056	1/2:30:0,21,8:0:0:21,8:741,274:-82.5373,-22.1939,-15.8723,-60.3305,0,-57.9222	1/2:62:0,24,38:0:0:24,38:856,1337:-178.832,-109.051,-101.826,-70.1358,0,-58.6967	1/1:117:0,117,0:0:0:117,0:4177,0:-376.109,-35.2205,0,-376.109,-35.2205,-376.109	1/1:96:0,95,0:0:0:95,0:3383,0:-304.383,-28.5979,0,-304.383,-28.5979,-304.383	1/2:28:0,19,8:0:0:19,8:684,279:-78.2728,-22.4482,-16.7286,-55.8679,0,-53.4597	1/2:37:0,15,22:0:0:15,22:540,767:-106.637,-62.5708,-58.0553,-44.4211,0,-37.7984	1/2:44:0,17,27:0:0:17,27:600,963:-127.582,-78.7241,-73.6066,-49.2117,0,-41.0839	1/2:29:0,13,16:0:0:13,16:460,546:-82.0455,-44.5713,-40.6579,-37.822,0,-33.0055	1/1:107:0,107,0:0:0:107,0:3829,0:-344.805,-32.2102,0,-344.805,-32.2102,-344.805	1/2:88:0,46,42:0:0:46,42:1635,1481:-253.852,-120.619,-106.771,-133.586,0,-120.943	1/1:87:0,87,0:0:0:87,0:3109,0:-280.035,-26.1896,0,-280.035,-26.1896,-280.035	1/1:88:0,88,0:0:0:88,0:3145,0:-283.144,-26.4906,0,-283.144,-26.4906,-283.144	1/2:118:0,49,69:0:0:49,69:1749,2430:-339.778,-197.19,-182.44,-142.942,0,-122.171	1/1:45:0,44,1:0:0:44,1:1580,36:-142.133,-13.2453,0,-139.203,-9.95712,-138.902	1/2:8:0,2,6:0:0:2,6:72,204:-22.5567,-16.6759,-16.0739,-6.23466,0,-4.42848	1/2:82:0,42,40:0:0:42,40:1497,1407:-236.099,-114.072,-101.429,-122.379,0,-110.338	1/1:60:0,60,0:0:0:60,0:2156,0:-194.306,-18.0618,0,-194.306,-18.0618,-194.306	1/2:119:0,66,53:0:0:66,53:2338,1869:-342.218,-151.762,-131.894,-190.809,0,-174.854	1/2:51:0,27,24:0:0:27,24:968,850:-148.301,-69.3468,-61.2189,-79.3096,0,-72.0848	1/2:79:0,41,37:0:0:41,37:1461,1303:-224.871,-106.052,-93.7099,-118.87,0,-107.732	1/1:42:0,42,0:0:0:42,0:1512,0:-136.375,-12.6433,0,-136.375,-12.6433,-136.375	1/1:124:0,123,1:0:0:123,1:4408,36:-396.532,-37.0267,0,-393.597,-33.732,-393.296	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:75:0,31,44:0:0:31,44:1092,1534:-212.916,-124.01,-114.678,-89.2549,0,-76.0096	1/2:68:0,34,34:0:0:34,34:1211,1217:-198.005,-99.3021,-89.0671,-99.0597,0,-88.8246	1/2:25:0,14,11:0:0:14,11:500,395:-73.2947,-32.5308,-28.3163,-41.1218,0,-37.8104	1/2:98:0,52,46:0:0:52,46:1868,1624:-284.083,-131.702,-116.049,-152.735,0,-138.888	1/2:84:0,27,56:0:0:27,56:968,1967:-238.691,-159.738,-151.61,-78.9498,0,-62.0921	1/1:105:0,104,0:0:0:104,0:3706,0:-333.439,-31.3071,0,-333.439,-31.3071,-333.439	1/1:97:0,97,0:0:0:97,0:3484,0:-313.77,-29.1999,0,-313.77,-29.1999,-313.77
chr11	28981776	.	GTTAGA	GTTAAA,ATTAAG	220172	PASS	AB=0.459199,0.535797;ABP=78.1409,60.8427;AC=139,47;AF=0.747312,0.252688;AN=186;AO=7516,2798;CIGAR=4M1X1M,1X3M2X;DP=10372;DPB=10370.8;DPRA=0,1.18095;EPP=16323.8,6078.79;EPPR=7.35324;GTI=1;LEN=1,6;MEANALT=2.13978,2.5;MQM=59.9561,54.0393;MQMR=60;NS=93;NUMALT=2;ODDS=5.11209;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=268896,97992;QR=72;RO=2;RPL=7516,2798;RPP=16323.8,6078.79;RPPR=7.35324;RPR=0,0;RUN=1,1;SAF=0,0;SAP=16323.8,6078.79;SAR=7516,2798;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,55,0:0:0:55,0:1972,0:-177.367,-16.5567,0,-177.367,-16.5567,-177.367	1/1:104:0,104,0:0:0:104,0:3704,0:-333.551,-31.3071,0,-333.551,-31.3071,-333.551	1/2:208:0,117,89:0:0:117,89:4196,3102:-592.15,-249.907,-214.687,-342.32,0,-315.529	1/2:329:0,116,212:0:0:116,212:4156,7455:-944.174,-605.226,-570.307,-338.983,0,-275.165	1/2:19:0,7,12:0:0:7,12:252,407:-53.8703,-33.3006,-31.1934,-20.9217,0,-17.3094	1/2:34:0,11,23:0:0:11,23:392,812:-98.2258,-66.2737,-62.9624,-32.3069,0,-25.3832	1/1:118:0,117,0:0:0:117,0:4204,0:-378.248,-35.2205,0,-378.248,-35.2205,-378.248	1/1:170:0,170,0:0:0:170,0:6080,0:-547.287,-51.1751,0,-547.287,-51.1751,-547.287	1/2:166:0,80,86:0:0:80,86:2865,2989:-474.486,-240.843,-216.76,-233.995,0,-208.106	1/1:149:0,145,3:0:0:145,3:5161,102:-464.284,-43.6494,0,-456.016,-35.3956,-455.113	1/2:22:0,13,9:0:0:13,9:468,321:-64.6832,-26.4946,-22.5812,-38.5463,0,-35.837	1/1:63:0,63,0:0:0:63,0:2247,0:-202.493,-18.9649,0,-202.493,-18.9649,-202.493	1/2:56:0,25,31:0:0:25,31:891,1089:-160.883,-88.2531,-80.7274,-72.983,0,-63.6511	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:50:0,50,0:0:0:50,0:1796,0:-161.921,-15.0515,0,-161.921,-15.0515,-161.921	1/1:44:0,44,0:0:0:44,0:1580,0:-142.492,-13.2453,0,-142.492,-13.2453,-142.492	1/2:31:0,17,14:0:0:17,14:612,502:-91.0863,-41.1488,-36.0313,-50.2959,0,-46.0815	1/2:18:0,11,7:0:0:11,7:396,252:-53.176,-20.8639,-17.5525,-32.6714,0,-30.5642	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:234:0,233,0:0:0:233,0:8343,0:-750.511,-70.14,0,-750.511,-70.14,-750.511	1/2:271:0,149,121:0:0:149,121:5335,4207:-775.617,-340.539,-295.686,-435.149,0,-398.724	1/1:90:0,90,0:0:0:90,0:3232,0:-291.101,-27.0927,0,-291.101,-27.0927,-291.101	1/2:146:0,53,93:0:0:53,93:1896,3241:-418.094,-263.485,-247.53,-154.963,0,-126.968	1/2:82:0,72,9:0:0:72,9:2572,306:-234.467,-24.7669,-3.09277,-209.684,0,-206.975	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/2:418:0,176,239:0:0:176,239:6311,8354:-1192.31,-677.565,-624.584,-514.81,0,-442.864	1/2:273:0,114,159:0:0:114,159:4085,5571:-783.929,-450.784,-416.467,-333.499,0,-285.635	1/2:23:0,15,8:0:0:15,8:540,276:-66.8078,-22.7365,-18.2211,-44.4211,0,-42.0128	1/2:425:0,191,229:0:0:191,229:6803,8090:-1212.38,-657.889,-600.392,-554.53,0,-485.594	1/2:182:0,83,98:0:0:83,98:2961,3408:-517.065,-275.68,-250.695,-241.426,0,-211.925	1/1:156:0,153,3:0:0:153,3:5471,103:-492.173,-46.0576,0,-483.815,-37.3567,-482.912	1/2:38:0,17,21:0:0:17,21:612,730:-109.532,-59.5905,-54.473,-50.2959,0,-43.9743	1/1:29:0,29,0:0:0:29,0:1012,0:-91.3839,-8.72987,0,-91.3839,-8.72987,-91.3839	1/2:20:0,8,12:0:0:8,12:288,422:-58.1219,-34.6189,-32.2107,-23.8592,0,-20.2468	1/2:22:0,8,14:0:0:8,14:288,483:-62.9585,-39.4533,-37.0451,-23.8592,0,-19.6447	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:137:0,136,0:0:0:136,0:4864,0:-437.648,-40.9401,0,-437.648,-40.9401,-437.648	1/1:106:0,105,0:0:0:105,0:3746,0:-336.98,-31.6082,0,-336.98,-31.6082,-336.98	1/2:31:0,12,19:0:0:12,19:432,657:-88.6663,-53.4111,-49.7987,-35.6088,0,-29.8893	.:.:.:.:.:.:.:.	1/2:179:0,71,108:0:0:71,108:2525,3811:-514.638,-308.868,-287.495,-206.124,0,-173.613	1/1:29:0,27,0:0:0:27,0:972,0:-87.4386,-8.12781,0,-87.4386,-8.12781,-87.4386	1/1:103:0,103,0:0:0:103,0:3685,0:-331.581,-31.0061,0,-331.581,-31.0061,-331.581	1/1:32:0,31,0:0:0:31,0:1116,0:-100.392,-9.33193,0,-100.392,-9.33193,-100.392	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/1:124:0,123,0:0:0:123,0:4412,0:-396.931,-37.0267,0,-396.931,-37.0267,-396.931	1/2:79:0,38,40:0:0:38,40:1368,1403:-225.538,-113.911,-102.472,-111.681,0,-99.6402	1/1:222:0,218,0:0:0:218,0:7816,0:-703.117,-65.6245,0,-703.117,-65.6245,-703.117	1/1:113:0,112,0:0:0:112,0:3986,0:-358.675,-33.7154,0,-358.675,-33.7154,-358.675	1/2:199:0,91,106:0:0:91,106:3276,3720:-569.682,-302.372,-274.978,-267.405,0,-235.496	1/1:171:0,169,1:0:0:169,1:6044,36:-543.729,-50.8741,0,-540.793,-47.9077,-540.492	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3154,-8.42884,0,-90.3154,-8.42884,-90.3154	1/1:111:0,111,0:0:0:111,0:3959,0:-356.499,-33.4143,0,-356.499,-33.4143,-356.499	1/1:77:0,74,3:0:0:74,3:2634,103:-236.964,-22.2762,0,-228.632,-13.602,-227.729	1/2:23:0,10,13:0:0:10,13:356,463:-66.8198,-37.8037,-34.7934,-29.3709,0,-25.4576	1/1:201:0,200,0:0:0:200,0:7145,0:-642.906,-60.206,0,-642.906,-60.206,-642.906	1/1:38:0,37,0:0:0:37,0:1332,0:-119.823,-11.1381,0,-119.823,-11.1381,-119.823	1/2:26:0,12,14:0:0:12,14:413,499:-74.3448,-40.8082,-37.1958,-33.8855,0,-29.671	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5123,-9.0309,0,-97.5123,-9.0309,-97.5123	1/2:91:0,30,60:0:0:30,60:1064,2113:-258.105,-171.419,-162.388,-86.7479,0,-68.6861	1/1:61:0,61,0:0:0:61,0:2192,0:-197.545,-18.3628,0,-197.545,-18.3628,-197.545	1/2:4:0,3,1:0:0:3,1:104,35:-11.6464,-3.19553,-2.29244,-8.79971,0,-8.49868	1/2:427:0,220,206:0:0:220,206:7878,7207:-1227.44,-584.979,-518.752,-642.458,0,-580.446	1/1:303:0,300,2:0:0:300,2:10740,72:-966.123,-90.309,0,-960.253,-84.439,-959.651	1/2:80:0,32,47:0:0:32,47:1152,1658:-228.441,-134.44,-124.807,-93.9974,0,-79.8489	1/2:103:0,45,58:0:0:45,58:1620,2001:-294.593,-162.402,-148.856,-132.544,0,-115.084	1/1:272:0,270,1:0:0:270,1:9609,32:-864.489,-81.2781,0,-861.912,-78.6558,-861.611	1/1:186:0,185,0:0:0:185,0:6624,0:-595.874,-55.6906,0,-595.874,-55.6906,-595.874	1/2:24:0,12,12:0:0:12,12:432,431:-70.7133,-35.4637,-31.8513,-35.6088,0,-31.9965	1/2:70:0,31,39:0:0:31,39:1112,1348:-199.969,-109.261,-99.9292,-91.0594,0,-79.3192	1/2:33:0,11,22:0:0:11,22:392,772:-94.8896,-62.9348,-59.6235,-32.3087,0,-25.6861	1/2:41:0,15,26:0:0:15,26:528,909:-117.144,-74.1593,-69.6439,-43.3359,0,-35.5091	1/1:126:0,123,0:0:0:123,0:4412,0:-396.911,-37.0267,0,-396.911,-37.0267,-396.911	1/2:167:0,85,81:0:0:85,81:3035,2803:-474.473,-227.031,-201.443,-247.542,0,-223.158	1/1:202:0,201,0:0:0:201,0:7170,0:-644.99,-60.507,0,-644.99,-60.507,-644.99	1/1:308:0,304,0:0:0:304,0:10904,0:-980.914,-91.5131,0,-980.914,-91.5131,-980.914	1/2:37:0,16,21:0:0:16,21:572,729:-105.847,-59.2023,-54.3859,-46.9969,0,-40.6753	1/1:156:0,155,0:0:0:155,0:5555,0:-499.847,-46.6597,0,-499.847,-46.6597,-499.847	1/2:49:0,28,21:0:0:28,21:1004,729:-141.169,-59.2733,-50.8445,-82.247,0,-75.9254	1/2:149:0,67,81:0:0:67,81:2412,2851:-428.357,-231.546,-211.377,-196.846,0,-172.463	1/1:160:0,158,0:0:0:158,0:5659,0:-509.069,-47.5627,0,-509.069,-47.5627,-509.069	1/2:276:0,129,147:0:0:129,147:4605,5166:-794.448,-419.116,-380.283,-375.685,0,-331.434	1/2:40:1,19,19:1:36:19,19:680,674:-107.076,-51.9207,-49.1391,-52.5619,0,-49.7801	1/2:40:0,25,15:0:0:25,15:900,522:-116.136,-42.693,-35.1672,-73.7953,0,-69.2798	1/1:41:0,41,0:0:0:41,0:1476,0:-133.136,-12.3422,0,-133.136,-12.3422,-133.136	1/1:112:0,111,1:0:0:111,1:3988,36:-358.741,-33.4143,0,-355.806,-30.1197,-355.505	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/2:59:1,18,40:1:36:18,40:648,1399:-163.174,-110.599,-108.118,-49.9361,0,-40.8323	1/2:52:0,24,28:0:0:24,28:846,988:-149.474,-80.5923,-73.3675,-69.2336,0,-60.8048	1/2:26:0,18,8:0:0:18,8:633,288:-75.3415,-23.8219,-18.4034,-51.8765,0,-49.4683	1/2:60:0,29,30:0:0:29,30:1036,1047:-169.369,-84.9034,-76.1735,-84.5634,0,-75.5325	1/2:48:0,12,36:0:0:12,36:432,1268:-138.392,-103.14,-99.528,-35.6088,0,-24.7718	1/1:246:0,246,0:0:0:246,0:8769,0:-789.198,-74.0534,0,-789.198,-74.0534,-789.198	1/1:62:0,62,0:0:0:62,0:2223,0:-200.333,-18.6639,0,-200.333,-18.6639,-200.333
chr11	29012313	.	ACGGC	ACGAC,ACGAT,ATGAC	290872	PASS	AB=0.596344,0.364885,0.128157;ABP=558.665,1041.64,3189.2;AC=135,44,9;AF=0.718085,0.234043,0.0478723;AN=188;AO=8837,2413,373;CIGAR=3M1X1M,3M2X,1M1X1M1X1M;DP=11721;DPB=11706;DPRA=63.0054,1.62934,1.08794;EPP=19192.3,5242.77,812.97;EPPR=16.0391;GTI=8;LEN=1,2,5;MEANALT=2.80645,3.26316,3.66667;MQM=58.7833,45.4488,42.3217;MQMR=54.8333;NS=94;NUMALT=3;ODDS=2.47543;PAIRED=0,0,0;PAIREDR=0;PAO=0,0,0;PQA=0,0,0;PQR=0;PRO=0;QA=311037,84332,12590;QR=216;RO=6;RPL=3556,983,10;RPP=734.196,182.82,728.439;RPPR=3.0103;RPR=5281,1430,363;RUN=1,1,1;SAF=3556,983,10;SAP=734.196,182.82,728.439;SAR=5281,1430,363;SRF=3;SRP=3.0103;SRR=3;TYPE=snp,mnp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:70:0,70,0,0:0:0:70,0,0:2472,0,0:-221.653,-21.0721,0,-221.653,-21.0721,-221.653,-221.653,-21.0721,-221.653,-221.653	1/1:78:0,77,0,0:0:0:77,0,0:2693,0,0:-242.144,-23.1793,0,-242.144,-23.1793,-242.144,-242.144,-23.1793,-242.144,-242.144	2/3:201:0,61,73,66:0:0:61,73,66:2172,2525,2244:-369.873,-193.114,-174.751,-177.502,-0.738529,-155.526,-192.363,-15.5976,0,-172.495	1/1:150:0,144,1,2:0:0:144,1,2:5059,36,62:-455.144,-43.3483,0,-453.226,-41.4431,-452.925,-450.225,-38.434,-448.307,-449.623	1/2:50:0,24,22,3:0:0:24,22,3:836,779,98:-124.843,-56.8546,-49.6299,-67.9913,0,-61.3686,-117.039,-49.0499,-60.1894,-116.136	1/2:73:0,33,26,13:0:0:33,26,13:1169,868,436:-157.915,-62.7213,-52.7874,-95.1914,0,-87.3646,-123.417,-28.2144,-60.6995,-119.504	1/1:160:0,159,1,0:0:0:159,1,0:5641,36,0:-507.425,-47.8638,0,-505.506,-45.6979,-505.205,-507.425,-47.8638,-505.506,-507.425	1/2:223:0,150,72,0:0:0:150,72,0:5273,2514,0:-605.242,-176.76,-131.605,-428.591,0,-406.917,-605.242,-176.76,-428.591,-605.242	1/2:149:0,66,70,10:0:0:66,70,10:2356,2471,317:-345.391,-153.566,-133.698,-191.834,0,-170.762,-320.622,-128.792,-167.07,-317.612	1/2:177:0,131,44,0:0:0:131,44,0:4577,1515,0:-474.152,-101.812,-62.3769,-372.288,0,-359.043,-474.152,-101.812,-372.288,-474.152	1/2:82:0,40,40,1:0:0:40,40,1:1378,1395,29:-215.301,-103.366,-91.3246,-112.007,0,-99.9659,-213.264,-101.329,-109.971,-212.962	1/1:189:0,188,0,0:0:0:188,0,0:6595,0,0:-592.817,-56.5936,0,-592.817,-56.5936,-592.817,-592.817,-56.5936,-592.817,-592.817	1/2:162:0,54,69,36:0:0:54,69,36:1880,2384,1213:-312.938,-160.269,-144.013,-152.667,0,-131.896,-217.565,-64.8871,-57.3041,-206.728	1/2:157:0,108,49,0:0:0:108,49,0:3731,1683,0:-423.204,-120.066,-87.5546,-303.456,0,-288.705,-423.204,-120.066,-303.456,-423.204	1/1:136:0,134,0,0:0:0:134,0,0:4720,0,0:-424.548,-40.338,0,-424.548,-40.338,-424.548,-424.548,-40.338,-424.548,-424.548	1/2:156:0,110,46,0:0:0:110,46,0:3830,1613,0:-419.173,-108.19,-75.0764,-311.294,0,-297.446,-419.173,-108.19,-311.294,-419.173	1/3:45:0,25,0,17:0:0:25,0,17:876,0,565:-115.353,-44.1202,-36.5945,-115.353,-44.1202,-115.353,-71.2142,0,-71.2142,-66.0967	1/2:91:0,40,33,18:0:0:40,33,18:1401,1162,596:-188.585,-74.9594,-62.9182,-113.622,0,-103.688,-141.994,-28.3569,-67.0408,-136.576	1/1:55:0,54,0,0:0:0:54,0,0:1892,0,0:-170.032,-16.2556,0,-170.032,-16.2556,-170.032,-170.032,-16.2556,-170.032,-170.032	1/1:209:0,209,0,0:0:0:209,0,0:7414,0,0:-667.31,-62.9153,0,-667.31,-62.9153,-667.31,-667.31,-62.9153,-667.31,-667.31	1/2:179:0,118,54,7:0:0:118,54,7:4138,1879,234:-472.66,-135.948,-100.427,-336.709,0,-320.453,-454.104,-117.391,-318.155,-451.997	1/1:67:0,67,0,0:0:0:67,0,0:2367,0,0:-213.216,-20.169,0,-213.216,-20.169,-213.216,-213.216,-20.169,-213.216,-213.216	1/2:190:0,109,78,2:0:0:109,78,2:3875,2734,72:-513.58,-197.783,-164.971,-315.778,0,-292.298,-507.92,-192.123,-310.119,-507.318	1/2:137:0,116,20,0:0:0:116,20,0:4105,679,0:-379.55,-45.2941,-10.3746,-334.195,0,-328.175,-379.55,-45.2941,-334.195,-379.55	1/1:104:0,103,0,0:0:0:103,0,0:3630,0,0:-326.545,-31.0061,0,-326.545,-31.0061,-326.545,-326.545,-31.0061,-326.545,-326.545	1/1:180:0,175,3,2:0:0:175,3,2:6167,108,67:-553.875,-52.6803,0,-545.067,-43.8574,-544.164,-548.46,-47.2751,-539.652,-547.858	1/2:213:0,96,112,4:0:0:96,112,4:3342,3970,120:-553.927,-282.184,-253.285,-271.765,0,-238.05,-544.485,-272.743,-262.325,-543.281	1/1:22:0,21,0,1:0:0:21,0,1:730,0,34:-65.6443,-6.32163,0,-65.6443,-6.32163,-65.6443,-62.9435,-3.28653,-62.9435,-62.6425	1/2:270:0,140,128,0:0:0:140,128,0:4940,4487,0:-733.14,-331.422,-289.278,-401.703,0,-363.171,-733.14,-331.422,-401.703,-733.14	1/2:189:0,101,83,2:0:0:101,83,2:3548,2925,68:-495.528,-206.738,-176.334,-288.801,0,-263.816,-490.125,-201.334,-283.399,-489.523	1/1:173:1,171,1,0:1:36:171,1,0:6018,36,0:-538.109,-48.5387,0,-535.472,-48.5387,-538.109,-538.41,-51.4761,-538.41,-541.347	1/2:4:0,1,3,0:0:0:1,3,0:36,97,0:-8.72274,-5.75481,-5.45378,-3.29724,0,-2.39415,-8.72274,-5.75481,-3.29724,-8.72274	1/1:13:0,13,0,0:0:0:13,0,0:451,0,0:-40.9198,-3.91339,0,-40.9198,-3.91339,-40.9198,-40.9198,-3.91339,-40.9198,-40.9198	2/3:3:0,1,1,1:0:0:1,1,1:32,36,36:-5.81223,-3.24558,-2.94455,-2.86657,-0.303386,-2.56554,-2.95737,-0.398962,0,-2.65634	1/1:16:0,14,1,1:0:0:14,1,1:492,36,21:-44.3477,-4.21442,0,-42.4344,-2.27672,-42.1334,-42.7702,-2.64703,-40.8579,-42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chr11	29079407	.	G	A	29212.6	PASS	AB=0.488419;ABP=7.63753;AC=45;AF=0.241935;AN=186;AO=1956;CIGAR=1X;DP=8810;DPB=8810;DPRA=1.05901;EPP=4250.41;EPPR=14858.1;GTI=3;LEN=1;MEANALT=1.01961;MQM=40.1733;MQMR=59.9589;NS=93;NUMALT=1;ODDS=0.786906;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70058;QR=243521;RO=6845;RPL=1956;RPP=4250.41;RPPR=14858.1;RPR=0;RUN=1;SAF=1956;SAP=4250.41;SAR=0;SRF=6845;SRP=14866.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:53:51,0:51:1816:0:0:0,-15.3525,-163.362	0/0:148:148,0:148:5253:0:0:0,-44.5524,-472.91	0/1:105:65,40:65:2304:40:1440:-96.2291,0,-176.011	0/1:151:80,71:80:2860:71:2548:-168.076,0,-212.182	0/1:74:34,40:34:1224:40:1436:-99.2538,0,-88.1885	0/1:36:18,18:18:644:18:648:-46.8381,0,-47.4535	0/0:86:85,0:85:3036:0:0:0,-25.5875,-273.106	0/0:169:168,1:168:5957:1:36:0,-47.3073,-532.673	0/1:92:48,44:48:1706:44:1580:-113.275,0,-126.123	0/0:51:51,0:51:1827:0:0:0,-15.3525,-164.7	0/1:44:22,22:22:788:22:777:-51.66,0,-57.9995	0/0:79:79,0:79:2790:0:0:0,-23.7814,-251.341	0/1:90:48,42:48:1708:42:1496:-105.995,0,-126.913	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.178	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:65:65,0:65:2299:0:0:0,-19.5669,-207.161	0/1:75:38,37:38:1355:37:1332:-96.026,0,-99.6725	0/1:65:38,27:38:1356:27:968:-67.1196,0,-102.772	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/0:127:127,0:127:4493:0:0:0,-38.2308,-404.519	0/1:155:70,85:70:2500:85:3060:-212.504,0,-178.522	0/0:120:118,2:118:4209:2:72:0,-29.2869,-372.154	0/1:102:67,35:67:2388:35:1253:-75.6654,0,-184.464	0/0:123:119,4:119:4239:4:144:0,-24.4926,-369.157	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.01	0/1:375:180,195:180:6447:195:6976:-467.363,0,-467.429	0/1:153:72,81:72:2573:81:2912:-198.157,0,-185.76	0/1:52:27,25:27:943:25:900:-60.6694,0,-69.5297	0/1:200:118,82:118:4223:82:2935:-183.23,0,-320.043	0/1:116:53,63:53:1896:63:2260:-156.508,0,-135.99	0/0:143:143,0:143:5080:0:0:0,-43.0473,-457.346	0/1:8:5,3:5:165:3:108:-7.07704,0,-12.7654	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:8,2:8:279:2:72:-3.76664,0,-22.4372	.:.:.:.:.:.:.:.	0/0:233:233,0:233:8252:0:0:0,-70.14,-742.689	0/0:203:203,0:203:7255:0:0:0,-61.1091,-652.907	0/1:38:13,25:13:459:25:887:-68.0395,0,-30.2049	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:46:29,17:29:1035:17:608:-38.1395,0,-79.6157	0/0:21:21,0:21:735:0:0:0,-6.32163,-66.4626	0/0:152:152,0:152:5415:0:0:0,-45.7566,-487.483	0/0:73:73,0:73:2592:0:0:0,-21.9752,-233.53	0/0:80:80,0:80:2845:0:0:0,-24.0824,-256.287	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.982	0/1:151:80,71:80:2853:71:2532:-178.966,0,-211.551	0/0:205:205,0:205:7265:0:0:0,-61.7111,-653.879	0/0:104:104,0:104:3706:0:0:0,-31.3071,-333.742	0/1:136:87,49:87:3093:49:1764:-108.874,0,-237.657	0/0:136:134,0:134:4790:0:0:0,-40.338,-430.896	0/1:2:1,1:1:36:1:36:-2.78554,0,-2.99621	0/0:89:88,0:88:3141:0:0:0,-26.4906,-282.555	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7598	0/1:6:3,3:3:108:3:108:-8.18089,0,-8.26899	0/0:118:118,0:118:4184:0:0:0,-35.5215,-376.738	0/0:25:24,0:24:849:0:0:0,-7.22472,-76.3682	0/1:5:3,2:3:99:2:68:-4.60039,0,-7.73143	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2843	0/1:77:47,30:47:1688:30:1080:-68.119,0,-129.028	0/0:162:162,0:162:5700:0:0:0,-48.7669,-513.123	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:273:129,143:129:4611:143:5144:-342.555,0,-332.965	0/0:278:272,6:272:9754:6:216:0,-65.0545,-859.159	0/1:36:16,20:16:572:20:708:-49.0363,0,-40.9763	0/1:65:44,21:44:1533:21:740:-43.7665,0,-118.688	0/0:189:187,2:187:6651:2:72:0,-50.0579,-591.831	0/0:123:123,0:123:4403:0:0:0,-37.0267,-396.442	0/1:12:3,9:3:108:9:324:-22.0653,0,-6.46281	0/1:82:40,42:40:1440:42:1504:-107.88,0,-105.213	0/1:71:34,37:34:1196:37:1332:-89.1657,0,-86.5695	0/1:9:7,2:7:252:2:68:-3.45655,0,-20.3197	0/0:19:19,0:19:667:0:0:0,-5.71957,-60.3546	0/1:92:42,50:42:1503:50:1783:-130.131,0,-107.869	0/0:133:133,0:133:4735:0:0:0,-40.037,-426.121	0/0:180:180,0:180:6420:0:0:0,-54.1854,-577.888	0/1:152:81,71:81:2873:71:2544:-181.261,0,-213.048	0/0:144:144,0:144:5132:0:0:0,-43.3483,-462.022	0/1:14:8,6:8:288:6:216:-15.403,0,-22.053	0/1:115:60,55:60:2144:55:1972:-132.192,0,-158.609	0/0:109:109,0:109:3848:0:0:0,-32.8123,-346.516	0/1:189:88,101:88:3149:101:3603:-246.533,0,-226.739	0/1:132:63,69:63:2235:69:2461:-167.552,0,-161.678	0/1:66:31,35:31:1116:35:1239:-86.0401,0,-80.8837	0/0:105:104,1:104:3674:1:36:0,-28.0099,-327.265	0/0:178:178,0:178:6284:0:0:0,-53.5833,-565.657	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.385	0/1:79:29,50:29:1031:50:1792:-135.927,0,-69.3213	0/1:91:41,50:41:1439:50:1788:-131.817,0,-102.411	0/1:27:12,15:12:424:15:540:-37.9435,0,-30.3686	0/1:38:24,14:24:838:14:504:-31.5834,0,-64.2972	0/1:65:25,40:25:888:40:1436:-101.72,0,-60.6721	0/0:100:100,0:100:3554:0:0:0,-30.103,-320.069	0/0:121:120,0:120:4245:0:0:0,-36.1236,-381.87
chr11	29306089	.	T	C	149473	PASS	AB=0.474604;ABP=23.8561;AC=140;AF=0.752688;AN=186;AO=5562;CIGAR=1X;DP=7542;DPB=7542;DPRA=40.9783;EPP=39.0906;EPPR=3.1963;GTI=2;LEN=1;MEANALT=1.07609;MQM=59.9889;MQMR=59.9965;NS=93;NUMALT=1;ODDS=0.0166074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198134;QR=70322;RO=1973;RPL=8;RPP=12011.4;RPPR=4226.74;RPR=5554;RUN=1;SAF=2941;SAP=42.9885;SAR=2621;SRF=1000;SRP=3.81263;SRR=973;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:946:-85.4529,-8.12781,0	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	0/1:108:67,41:67:2392:41:1427:-96.211,0,-183.026	0/1:93:50,43:50:1754:43:1536:-110.533,0,-130.146	0/1:34:15,19:15:536:19:671:-50.4808,0,-38.3398	0/1:16:7,9:7:248:9:316:-23.9624,0,-17.8477	1/1:70:0,70:0:0:70:2463:-221.924,-21.0721,0	1/1:114:0,114:0:0:114:4060:-365.587,-34.3174,0	0/1:88:61,27:61:2143:27:972:-61.3073,0,-166.645	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:125:57,68:57:2043:68:2419:-180.337,0,-146.512	1/1:174:0,174:0:0:174:6220:-559.895,-52.3792,0	0/1:180:102,78:102:3631:78:2776:-195.861,0,-272.811	1/1:188:0,188:0:0:188:6672:-600.56,-56.5936,0	1/1:141:1,140:1:36:140:4966:-443.495,-38.847,0	1/1:115:0,115:0:0:115:4082:-367.568,-34.6185,0	0/1:133:71,62:71:2548:62:2228:-160.747,0,-189.533	0/1:132:67,65:67:2380:65:2310:-168.424,0,-174.72	1/1:83:1,82:1:36:82:2931:-260.426,-21.3872,0	1/1:58:0,58:0:0:58:2074:-186.93,-17.4597,0	0/1:104:48,56:48:1712:56:2008:-149.686,0,-123.059	1/1:28:2,26:2:68:26:927:-77.2897,-1.97113,0	0/1:39:25,14:25:900:14:504:-33.9579,0,-69.5808	0/1:34:4,30:4:144:30:1068:-86.197,0,-3.0786	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	0/1:146:68,78:68:2427:78:2792:-207.57,0,-174.735	0/1:111:57,54:57:2039:54:1933:-140.832,0,-150.367	0/1:82:50,32:50:1768:32:1139:-78.1339,0,-134.719	0/1:107:68,39:68:2424:39:1396:-93.7289,0,-186.206	0/1:62:26,36:26:932:36:1276:-96.4792,0,-65.535	1/1:38:2,36:2:72:36:1279:-108.575,-4.60242,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:10:0,9:0:0:9:320:-28.8638,-2.70927,0	1/1:316:0,316:0:0:316:11256:-1012.93,-95.1255,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:95:41,54:41:1467:54:1923:-144.748,0,-103.727	.:.:.:.:.:.:.:.	0/1:69:30,39:30:1060:39:1384:-103.928,0,-74.9402	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	1/1:86:0,86:0:0:86:3051:-274.821,-25.8886,0	1/1:133:0,133:0:0:133:4747:-427.389,-40.037,0	1/1:113:0,113:0:0:113:4018:-361.81,-34.0164,0	1/1:47:0,47:0:0:47:1668:-150.407,-14.1484,0	0/1:63:38,25:38:1355:25:896:-61.9955,0,-103.285	1/1:79:0,79:0:0:79:2785:-250.89,-23.7814,0	1/1:56:0,56:0:0:56:1987:-179.104,-16.8577,0	0/1:82:40,42:40:1424:42:1504:-110.97,0,-103.773	1/1:57:0,57:0:0:57:2032:-183.153,-17.1587,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:58:0,57:0:0:57:2042:-183.692,-17.1587,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:72:0,72:0:0:72:2557:-230.381,-21.6742,0	1/1:26:0,26:0:0:26:921:-83.2052,-7.82678,0	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:73:39,34:39:1396:34:1212:-87.4111,0,-103.964	1/1:141:1,140:1:36:140:5014:-447.807,-38.847,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:58:31,26:31:1108:26:920:-65.5987,0,-82.5125	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	0/1:64:30,34:30:1072:34:1211:-90.0296,0,-77.5265	0/1:48:23,25:23:824:25:884:-65.4284,0,-60.0339	1/1:69:0,69:0:0:69:2457:-221.383,-20.7711,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:94:45,49:45:1616:49:1729:-127.596,0,-117.433	0/1:51:24,27:24:839:27:972:-72.4454,0,-60.4747	0/1:159:81,78:81:2891:78:2800:-204.376,0,-212.556	0/1:11:3,7:3:104:7:252:-19.6588,0,-6.336	1/1:43:0,42:0:0:42:1504:-135.295,-12.6433,0	0/1:78:50,28:50:1767:28:999:-66.7442,0,-135.832	1/1:103:0,103:0:0:103:3655:-329.155,-31.0061,0	1/1:76:1,75:1:36:75:2688:-238.566,-19.28,0	0/1:47:28,19:28:1008:19:680:-47.3808,0,-76.8879	1/1:95:1,93:1:36:93:3318:-295.239,-25.0584,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:69:32,37:32:1144:37:1296:-96.1673,0,-82.4984	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:113:63,50:63:2252:50:1788:-127.186,0,-168.927	0/1:146:77,69:77:2752:69:2457:-177.433,0,-203.972	0/1:128:79,49:79:2797:49:1731:-117.542,0,-213.438	1/1:156:2,154:2:72:154:5481:-486.582,-40.124,0	1/1:234:7,227:7:252:227:8097:-705.719,-47.4121,0	1/1:40:0,40:0:0:40:1419:-128.006,-12.0412,0	0/1:120:68,52:68:2427:52:1843:-130.026,0,-182.562	0/1:161:72,89:72:2575:89:3165:-236.604,0,-183.533	0/1:105:52,53:52:1856:53:1869:-136.879,0,-135.712	0/1:155:72,83:72:2563:83:2980:-221.772,0,-184.26	0/1:117:83,34:83:2968:34:1216:-74.5261,0,-232.133	1/1:58:0,57:0:0:57:2013:-181.082,-17.1587,0	1/1:208:0,208:0:0:208:7410:-666.95,-62.6142,0
chr11	29319954	.	A	G	110346	PASS	AB=0.454633;ABP=58.5715;AC=141;AF=0.758065;AN=186;AO=5220;CIGAR=1X;DP=6934;DPB=6934;DPRA=0;EPP=11338.1;EPPR=3716.23;GTI=0;LEN=1;MEANALT=1.04301;MQM=59.455;MQMR=59.793;NS=93;NUMALT=1;ODDS=2.57059;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186423;QR=60786;RO=1710;RPL=0;RPP=11338.1;RPPR=3716.23;RPR=5220;RUN=1;SAF=5220;SAP=11338.1;SAR=0;SRF=1710;SRP=3716.23;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:896:-80.7478,-7.52575,0	1/1:115:0,115:0:0:115:4094:-368.088,-34.6185,0	0/1:111:44,67:44:1564:67:2400:-182.682,0,-107.497	0/1:164:96,68:96:3364:68:2425:-169.135,0,-253.601	0/1:47:27,20:27:968:20:720:-50.9241,0,-73.289	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	1/1:77:0,77:0:0:77:2752:-247.789,-23.1793,0	1/1:148:0,148:0:0:148:5274:-474.645,-44.5524,0	0/1:80:53,27:53:1896:27:964:-62.6787,0,-146.749	1/1:70:0,70:0:0:70:2493:-224.393,-21.0721,0	0/1:35:22,13:22:788:13:464:-31.505,0,-60.7087	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:54:35,19:35:1252:19:680:-45.2036,0,-96.7248	1/1:44:0,44:0:0:44:1580:-142.488,-13.2453,0	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:38:0,38:0:0:38:1368:-123.415,-11.4391,0	0/1:52:30,22:30:1076:22:792:-55.9439,0,-81.4947	0/1:38:21,17:21:756:17:604:-43.2506,0,-56.9235	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	1/1:183:0,183:0:0:183:6480:-583.088,-55.0885,0	0/1:76:38,38:38:1360:38:1356:-98.966,0,-99.5939	1/1:87:0,87:0:0:87:3116:-280.666,-26.1896,0	0/1:68:31,37:31:1112:37:1320:-98.5197,0,-79.9213	1/1:157:9,148:9:305:148:5254:-442.737,-19.4845,0	1/1:37:0,37:0:0:37:1328:-119.813,-11.1381,0	0/1:239:126,113:126:4504:113:4048:-292.509,0,-333.577	0/1:159:84,75:84:2985:75:2687:-193.356,0,-220.744	0/1:26:13,13:13:460:13:464:-34.2707,0,-33.9086	0/1:189:101,88:101:3584:88:3148:-226.564,0,-265.871	0/1:107:58,49:58:2053:49:1764:-126.834,0,-152.829	1/1:89:0,89:0:0:89:3184:-286.692,-26.7917,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:3:1,2:1:36:2:57:-4.5062,0,-2.69518	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:6:0,6:0:0:6:197:-18.0512,-1.80618,0	1/1:137:0,137:0:0:137:4920:-441.941,-41.2411,0	1/1:134:0,134:0:0:134:4800:-432.021,-40.338,0	0/1:46:25,21:25:896:21:744:-53.4366,0,-67.113	.:.:.:.:.:.:.:.	0/1:113:53,60:53:1892:60:2148:-159.414,0,-136.541	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:120:2,118:2:72:118:4225:-373.163,-29.2869,0	1/1:45:0,45:0:0:45:1608:-145.001,-13.5464,0	1/1:54:0,54:0:0:54:1913:-172.227,-16.2556,0	1/1:134:0,134:0:0:134:4740:-426.383,-40.338,0	0/1:96:51,45:51:1820:45:1620:-117.184,0,-135.178	1/1:123:0,123:0:0:123:4383:-393.827,-37.0267,0	1/1:89:0,89:0:0:89:3184:-286.728,-26.7917,0	0/1:113:60,53:60:2133:53:1892:-136.542,0,-158.217	1/1:94:0,94:0:0:94:3368:-302.838,-28.2968,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:110:0,110:0:0:110:3929:-353.801,-33.1133,0	1/1:61:0,61:0:0:61:2173:-195.833,-18.3628,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:128:0,128:0:0:128:4566:-410.75,-38.5318,0	1/1:58:0,58:0:0:58:2084:-187.683,-17.4597,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8288	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:34:15,19:15:528:19:672:-50.4654,0,-37.6002	1/1:89:0,89:0:0:89:3200:-288.205,-26.7917,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:196:102,94:102:3613:94:3353:-242.915,0,-266.371	1/1:183:0,182:0:0:182:6494:-583.882,-54.7875,0	0/1:58:33,25:33:1176:25:896:-63.3943,0,-88.6573	0/1:57:34,23:34:1151:23:828:-57.6292,0,-86.7279	1/1:144:2,142:2:72:142:5084:-450.492,-36.5116,0	1/1:78:0,78:0:0:78:2793:-251.479,-23.4803,0	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:66:35,31:35:1244:31:1116:-80.8837,0,-92.3967	0/1:72:36,36:36:1296:36:1281:-93.9162,0,-95.2582	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:109:0,109:0:0:109:3881:-348.898,-32.8123,0	0/1:42:23,19:23:801:19:676:-47.9649,0,-59.7601	1/1:97:0,96:0:0:96:3440:-309.262,-28.8989,0	1/1:116:0,116:0:0:116:4149:-373.423,-34.9195,0	0/1:107:61,46:61:2176:46:1644:-116.038,0,-163.892	1/1:74:0,74:0:0:74:2648:-238.008,-22.2762,0	0/1:9:7,2:7:252:2:68:-3.74844,0,-20.3197	0/1:89:50,39:50:1784:39:1396:-99.1441,0,-134.049	1/1:101:0,99:0:0:99:3518:-316.17,-29.802,0	0/1:162:104,58:104:3653:58:2080:-138.647,0,-280.187	0/1:85:54,31:54:1928:31:1116:-75.1641,0,-148.19	0/1:40:21,19:21:756:19:672:-48.7656,0,-56.326	1/1:35:0,35:0:0:35:1244:-112.185,-10.5361,0	1/1:95:1,94:1:36:94:3330:-296.212,-24.9996,0	1/1:36:0,36:0:0:36:1292:-116.425,-10.8371,0	0/1:53:30,23:30:1076:23:824:-58.5287,0,-80.3404	0/1:39:20,19:20:704:19:684:-50.1217,0,-51.9397	0/1:45:25,20:25:892:20:712:-50.7539,0,-67.0533	0/1:42:21,21:21:756:21:729:-53.2854,0,-55.5939	0/1:31:24,7:24:864:7:252:-13.697,0,-68.7506	1/1:93:1,92:1:36:92:3308:-294.237,-24.3975,0	1/1:55:0,55:0:0:55:1953:-175.905,-16.5567,0
chr11	29354729	.	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chr11	29402334	.	A	G	43587.7	PASS	AB=0.482973;ABP=16.7643;AC=47;AF=0.25;AN=188;AO=2663;CIGAR=1X;DP=11575;DPB=11575;DPRA=1.01885;EPP=5768.28;EPPR=19337.8;GTI=0;LEN=1;MEANALT=1.05172;MQM=59.9189;MQMR=59.999;NS=94;NUMALT=1;ODDS=2.80924;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94638;QR=319476;RO=8908;RPL=2663;RPP=5785.64;RPPR=19346.5;RPR=0;RUN=1;SAF=2;SAP=5768.28;SAR=2661;SRF=1;SRP=19337.8;SRR=8907;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:89:89,0:89:3192:0:0:0,-26.7917,-287.503	0/0:78:78,0:78:2795:0:0:0,-23.4803,-251.789	0/1:116:55,61:55:1968:61:2148:-158.66,0,-142.476	0/1:326:165,160:165:5920:160:5671:-412.254,0,-434.713	0/1:97:59,38:59:2124:38:1347:-92.3296,0,-162.228	0/1:67:28,39:28:1004:39:1370:-103.427,0,-70.5069	0/0:160:160,0:160:5752:0:0:0,-48.1648,-517.793	0/0:185:185,0:185:6628:0:0:0,-55.6905,-596.598	0/1:189:107,82:107:3806:82:2936:-207.51,0,-285.844	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/1:60:32,28:32:1152:28:983:-70.7207,0,-85.9283	0/0:134:134,0:134:4800:0:0:0,-40.338,-432.156	0/1:102:50,52:50:1796:52:1851:-136.164,0,-131.217	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:47:24,23:24:864:23:816:-59.6133,0,-63.9342	0/1:43:22,21:22:792:21:734:-53.4171,0,-58.6614	0/0:40:39,1:39:1404:1:36:0,-8.44292,-123.061	0/0:175:174,1:174:6260:1:36:0,-49.082,-559.892	0/1:212:127,85:127:4564:85:3035:-209.562,0,-347.106	0/0:186:186,0:186:6664:0:0:0,-55.9916,-599.837	0/1:237:106,131:106:3800:131:4658:-348.002,0,-270.847	0/0:81:78,3:78:2808:3:104:0,-14.6806,-243.256	0/0:106:106,0:106:3796:0:0:0,-31.9092,-341.838	0/1:392:180,212:180:6456:212:7541:-560.73,0,-463.121	0/1:257:144,113:144:5148:113:3999:-282.739,0,-386.097	0/1:40:20,20:20:720:20:720:-53.0876,0,-53.0876	0/1:341:199,142:199:7129:142:5036:-350.631,0,-539.014	0/1:183:104,79:104:3709:79:2786:-195.892,0,-278.923	0/0:152:142,10:142:5091:10:360:0,-13.0123,-425.588	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	0/1:35:21,14:21:752:14:504:-35.162,0,-57.4702	0/1:12:7,5:7:252:5:172:-12.205,0,-19.4166	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:269:269,0:269:9659:0:0:0,-80.9771,-869.256	0/0:87:85,1:85:3044:1:36:0,-22.5952,-270.645	0/1:54:29,25:29:1040:25:896:-64.7047,0,-77.6587	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:215:101,114:101:3632:114:4059:-300.777,0,-262.362	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:285:284,1:284:10200:1:36:0,-82.1953,-914.325	0/0:77:77,0:77:2763:0:0:0,-23.1793,-248.91	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/0:190:190,0:190:6832:0:0:0,-57.1957,-614.946	0/1:137:69,68:69:2476:68:2416:-176.438,0,-181.852	0/0:199:199,0:199:7144:0:0:0,-59.905,-643.015	0/0:144:143,1:143:5124:1:36:0,-39.75,-457.703	0/1:128:52,76:52:1849:76:2716:-206.15,0,-128.156	0/0:122:121,0:121:4328:0:0:0,-36.4246,-389.376	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:100:100,0:100:3581:0:0:0,-30.103,-322.495	0/0:98:98,0:98:3520:0:0:0,-29.5009,-317.009	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/0:197:197,0:197:7054:0:0:0,-59.3029,-634.919	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/1:24:10,14:10:356:14:500:-38.1115,0,-25.1565	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:137:70,67:70:2516:67:2392:-174.296,0,-185.45	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/1:20:6,14:6:212:14:500:-39.3156,0,-13.4042	0/1:238:133,105:133:4776:105:3754:-266.415,0,-358.35	0/0:272:272,0:272:9741:0:0:0,-81.8802,-876.636	0/1:118:57,60:57:2044:60:2132:-156.568,0,-148.651	0/1:106:58,48:58:2088:48:1720:-123.176,0,-156.281	0/0:264:263,1:263:9427:1:36:0,-75.8736,-844.79	0/0:150:149,1:149:5337:1:32:0,-41.9552,-477.262	0/1:37:22,15:22:788:15:540:-37.7984,0,-60.1067	0/1:62:25,37:25:896:37:1316:-100.078,0,-62.2965	0/1:36:24,12:24:860:12:416:-26.9255,0,-66.8848	0/1:29:16,13:16:576:13:468:-33.7236,0,-43.4451	0/0:193:193,0:193:6909:0:0:0,-58.0988,-621.875	0/1:107:47,60:47:1688:60:2140:-160.658,0,-119.997	0/0:222:222,0:222:7951:0:0:0,-66.8287,-715.612	0/0:225:225,0:225:8080:0:0:0,-67.7317,-727.214	0/1:101:61,40:61:2192:40:1436:-99.1336,0,-167.141	0/0:101:101,0:101:3620:0:0:0,-30.404,-326.005	0/1:41:17,24:17:604:24:851:-64.5679,0,-42.3484	0/1:148:73,75:73:2628:75:2679:-196.802,0,-192.214	0/0:215:215,0:215:7712:0:0:0,-64.7214,-694.111	0/1:362:187,175:187:6684:175:6209:-449.938,0,-492.663	0/1:64:35,29:35:1260:29:1018:-72.6645,0,-94.4396	0/1:86:44,42:44:1576:42:1477:-107.335,0,-116.243	0/0:86:86,0:86:3087:0:0:0,-25.8886,-278.057	0/0:191:188,3:188:6752:3:108:0,-47.4216,-597.676	0/0:47:47,0:47:1666:0:0:0,-14.1484,-150.226	0/1:84:46,38:46:1652:38:1360:-97.4141,0,-123.682	0/1:90:48,42:48:1724:42:1487:-107.031,0,-128.353	0/1:53:26,27:26:923:27:968:-71.4828,0,-67.4322	0/1:97:60,37:60:2147:37:1306:-88.6294,0,-164.297	0/1:87:29,58:29:1044:58:2039:-157.575,0,-68.0852	0/0:162:160,2:160:5740:2:72:0,-41.9301,-509.878	0/0:152:152,0:152:5468:0:0:0,-45.7566,-492.245
chr11	29403943	.	G	C	133601	PASS	AB=0.499288;ABP=3.02885;AC=141;AF=0.75;AN=188;AO=7447;CIGAR=1X;DP=9587;DPB=9587;DPRA=69.4493;EPP=16174;EPPR=4623.9;GTI=2;LEN=1;MEANALT=1.11957;MQM=34.6856;MQMR=47.9901;NS=94;NUMALT=1;ODDS=1.55288;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=266488;QR=76043;RO=2128;RPL=0;RPP=16174;RPPR=4623.9;RPR=7447;RUN=1;SAF=7447;SAP=16174;SAR=0;SRF=2128;SRP=4623.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1241:-99.612,-10.5361,0	1/1:129:0,129:0:0:129:4597:-375.459,-38.8329,0	0/1:85:49,36:49:1752:36:1292:-80.0379,0,-131.495	0/1:223:112,111:112:3998:111:3983:-248.455,0,-288.879	0/1:63:24,38:24:845:38:1364:-89.5348,0,-56.4972	0/1:60:30,30:30:1080:30:1072:-66.4026,0,-78.6193	1/1:276:0,275:0:0:275:9873:-781.526,-82.7833,0	1/1:145:0,144:0:0:144:5154:-417.702,-43.3483,0	0/1:114:61,53:61:2192:53:1880:-118.942,0,-162.131	1/1:152:0,152:0:0:152:5441:-431.303,-45.7566,0	0/1:54:32,22:32:1152:22:792:-47.2311,0,-86.4948	1/1:70:0,70:0:0:70:2519:-203.503,-21.0721,0	0/1:79:38,41:38:1364:41:1468:-93.6582,0,-98.6077	1/1:79:0,79:0:0:79:2782:-224.168,-23.7814,0	1/1:71:0,71:0:0:71:2544:-203.557,-21.3731,0	1/1:63:1,62:1:36:62:2224:-177.598,-15.3915,0	0/1:77:29,48:29:1040:48:1724:-116.08,0,-70.1167	0/1:72:35,37:35:1260:37:1332:-86.0601,0,-91.074	1/1:36:0,36:0:0:36:1296:-103.781,-10.8371,0	1/1:256:4,251:4:140:251:8971:-698.071,-64.2417,0	0/1:155:73,82:73:2628:82:2924:-191.094,0,-188.535	1/1:78:0,77:0:0:77:2764:-224.845,-23.1793,0	0/1:118:55,63:55:1976:63:2260:-145.647,0,-140.513	1/1:170:3,167:3:108:167:5992:-476.656,-41.1927,0	1/1:81:0,80:0:0:80:2864:-232.224,-24.0824,0	0/1:273:139,134:139:4932:134:4795:-312.614,0,-358.044	0/1:205:90,115:90:3228:115:4128:-273.335,0,-226.045	0/1:36:22,14:22:777:14:500:-29.1634,0,-58.9609	0/1:272:127,145:127:4492:145:5177:-344.432,0,-319.78	0/1:177:98,79:98:3505:79:2836:-171.823,0,-259.596	1/1:121:0,119:0:0:119:4253:-339.942,-35.8226,0	0/1:6:2,4:2:72:4:144:-10.2046,0,-4.98334	1/1:12:1,11:1:36:11:396:-28.8882,-0.0389259,0	0/1:7:3,4:3:108:4:144:-9.84943,0,-7.91334	0/1:5:4,1:4:144:1:36:-1.74101,0,-11.7363	1/1:5:0,5:0:0:5:180:-14.9323,-1.50515,0	1/1:199:0,199:0:0:199:7149:-586.568,-59.905,0	1/1:207:0,207:0:0:207:7383:-597.992,-62.3132,0	0/1:79:40,39:40:1436:39:1404:-89.8694,0,-104.797	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	0/1:179:96,83:96:3429:83:2976:-186.022,0,-252.38	1/1:49:0,49:0:0:49:1760:-142.744,-14.7505,0	1/1:117:0,117:0:0:117:4208:-339.794,-35.2205,0	1/1:95:0,95:0:0:95:3395:-266.624,-28.5979,0	1/1:59:0,59:0:0:59:2095:-169.168,-17.7608,0	1/1:123:0,123:0:0:123:4415:-362.407,-37.0267,0	0/1:118:51,67:51:1817:67:2412:-161.147,0,-126.836	1/1:163:0,162:0:0:162:5803:-461.45,-48.7669,0	1/1:119:0,119:0:0:119:4241:-339.016,-35.8226,0	0/1:102:51,51:51:1803:51:1828:-115.087,0,-129.843	1/1:249:0,249:0:0:249:8927:-727.949,-74.9565,0	1/1:3:0,3:0:0:3:104:-8.79335,-0.90309,0	1/1:143:1,142:1:36:142:5092:-410.552,-39.4685,0	1/1:86:0,86:0:0:86:3088:-254.699,-25.8886,0	1/1:13:1,12:1:36:12:432:-31.8044,-0.334623,0	1/1:138:0,138:0:0:138:4944:-400.476,-41.5421,0	1/1:62:0,62:0:0:62:2211:-176.554,-18.6639,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.5339	1/1:17:0,17:0:0:17:608:-50.5835,-5.11751,0	0/1:76:28,48:28:1004:48:1693:-114.502,0,-66.8867	1/1:104:2,102:2:72:102:3668:-283.402,-24.5302,0	0/1:3:2,1:2:72:1:36:-2.28453,0,-5.87385	0/1:162:79,83:79:2821:83:2980:-197.35,0,-203.973	1/1:178:1,177:1:21:177:6308:-502.684,-51.4968,0	0/1:74:23,51:23:828:51:1820:-125.314,0,-52.0086	0/1:78:42,36:42:1493:36:1236:-75.9128,0,-109.671	1/1:207:3,204:3:108:204:7293:-572.116,-52.3432,0	1/1:111:1,110:1:36:110:3929:-311.31,-29.8475,0	0/1:31:16,15:16:576:15:540:-34.7047,0,-42.4829	0/1:111:62,49:62:2213:49:1741:-107.637,0,-164.967	0/1:80:32,48:32:1152:48:1728:-118.406,0,-79.0873	0/1:14:8,6:8:288:6:216:-13.3175,0,-21.8233	1/1:123:0,123:0:0:123:4400:-355.619,-37.0267,0	0/1:71:43,28:43:1529:28:988:-58.8712,0,-115.821	1/1:196:0,196:0:0:196:7002:-569.057,-59.0019,0	1/1:148:0,148:0:0:148:5311:-420.957,-44.5524,0	0/1:63:31,32:31:1116:32:1152:-74.8651,0,-80.6383	1/1:68:0,68:0:0:68:2420:-195.579,-20.47,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.57877	0/1:107:61,45:61:2184:45:1620:-99.2528,0,-162.439	1/1:124:0,124:0:0:124:4414:-356.766,-37.3277,0	0/1:280:154,125:154:5498:125:4478:-271.497,0,-405.316	0/1:112:57,55:57:2052:55:1963:-122.625,0,-149.277	0/1:66:24,42:24:864:42:1508:-100.871,0,-57.131	1/1:93:0,93:0:0:93:3324:-264.409,-27.9958,0	1/1:122:0,121:0:0:121:4340:-342.505,-36.4246,0	1/1:48:0,48:0:0:48:1724:-138.335,-14.4494,0	0/1:67:37,30:37:1317:30:1080:-66.9645,0,-97.9475	0/1:66:31,35:31:1112:35:1260:-82.4006,0,-79.2893	0/1:43:25,18:25:900:18:644:-38.115,0,-67.7679	0/1:79:45,34:45:1616:34:1216:-74.5882,0,-120.665	0/1:72:46,26:46:1641:26:923:-52.8486,0,-124.636	1/1:118:0,118:0:0:118:4209:-334.204,-35.5215,0	1/1:108:0,108:0:0:108:3871:-309.997,-32.5112,0
chr11	29404011	.	A	G	45648.1	PASS	AB=0.488707;ABP=8.01296;AC=46;AF=0.247312;AN=186;AO=2231;CIGAR=1X;DP=10285;DPB=10285;DPRA=0.890286;EPP=1816.52;EPPR=676.577;GTI=1;LEN=1;MEANALT=1.05172;MQM=50.8247;MQMR=59.9824;NS=93;NUMALT=1;ODDS=3.56661;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=79494;QR=287900;RO=8048;RPL=1798;RPP=1816.52;RPPR=676.577;RPR=433;RUN=1;SAF=0;SAP=4847.57;SAR=2231;SRF=0;SRP=17479;SRR=8048;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:13,0:13:455:0:0:0,-3.91339,-41.282	0/0:132:130,2:130:4637:2:72:0,-32.9011,-410.658	0/1:128:63,65:63:2260:65:2307:-168.489,0,-165.131	0/1:205:85,120:85:3060:120:4246:-318.806,0,-213.917	0/1:50:29,21:29:1032:21:747:-52.2802,0,-78.142	0/1:66:39,27:39:1386:27:956:-66.2866,0,-105.169	0/0:268:267,1:267:9567:1:36:0,-77.0778,-857.377	0/0:172:172,0:172:6154:0:0:0,-51.7772,-553.958	0/1:147:86,60:86:3072:60:2136:-147.537,0,-232.399	0/0:154:154,0:154:5506:0:0:0,-46.3586,-495.666	0/1:52:27,25:27:972:25:900:-65.334,0,-72.1443	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/1:72:37,35:37:1309:35:1260:-91.7178,0,-96.4354	0/0:72:71,1:71:2531:1:36:0,-18.0877,-224.455	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/1:61:39,22:39:1404:22:780:-51.5393,0,-108.296	0/1:61:27,34:27:972:34:1220:-91.4561,0,-69.4351	0/0:44:43,1:43:1529:1:36:0,-9.64704,-134.303	0/0:284:284,0:284:10177:0:0:0,-85.4925,-915.856	0/1:222:130,92:130:4651:92:3287:-228.219,0,-351.923	0/0:83:82,1:82:2943:1:36:0,-21.3872,-261.505	0/1:102:48,54:48:1724:54:1923:-141.807,0,-124.74	0/0:137:129,7:129:4616:7:248:0,-18.9232,-393.227	0/0:85:85,0:85:3026:0:0:0,-25.5875,-272.57	0/1:363:176,187:176:6292:187:6673:-489.226,0,-457.083	0/1:165:108,57:108:3875:57:2010:-130.924,0,-299.273	0/1:46:24,22:24:851:22:792:-57.3169,0,-63.0612	0/1:282:150,132:150:5354:132:4707:-337.107,0,-397.099	0/1:161:89,72:89:3179:72:2552:-180.503,0,-237.868	0/0:158:158,0:158:5663:0:0:0,-47.5627,-509.788	0/1:6:3,3:3:108:3:104:-7.87019,0,-8.26899	0/1:9:3,6:3:104:6:212:-16.6317,0,-6.99354	0/1:6:2,4:2:72:4:140:-11.1099,0,-5.03054	0/1:8:1,7:1:36:7:248:-20.203,0,-1.19003	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:218:217,0:217:7795:0:0:0,-65.3235,-701.216	0/0:192:192,0:192:6858:0:0:0,-57.7978,-617.29	0/1:74:37,37:37:1320:37:1332:-97.5708,0,-96.8257	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:144:74,70:74:2660:70:2491:-178.451,0,-196.297	0/0:44:44,0:44:1554:0:0:0,-13.2453,-140.15	0/0:113:112,0:112:4028:0:0:0,-33.7154,-362.347	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.347	0/0:171:171,0:171:6105:0:0:0,-51.4761,-549.551	0/1:135:70,65:70:2503:65:2285:-164.199,0,-184.883	0/0:240:240,0:240:8572:0:0:0,-72.2472,-771.449	0/0:173:173,0:173:6175:0:0:0,-52.0782,-555.804	0/1:140:74,66:74:2660:66:2367:-170.244,0,-197.501	0/0:215:215,0:215:7674:0:0:0,-64.7214,-690.694	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:154:154,0:154:5528:0:0:0,-46.3586,-497.643	0/0:73:72,1:72:2588:1:36:0,-18.3769,-229.57	0/1:19:6,13:6:216:13:464:-36.0908,0,-14.0709	0/0:132:132,0:132:4727:0:0:0,-39.736,-425.588	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	.:.:.:.:.:.:.:.	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:89:42,47:42:1483:47:1670:-122.864,0,-106.971	0/0:122:121,1:121:4312:1:32:0,-33.5325,-385.063	0/1:2:1,1:1:36:1:36:-2.98099,0,-2.99621	0/1:182:92,90:92:3271:90:3216:-233.69,0,-239.779	0/0:201:197,4:197:7037:4:144:0,-47.2216,-620.102	0/1:89:44,45:44:1571:45:1612:-117.435,0,-114.889	0/1:96:51,45:51:1828:45:1596:-114.4,0,-135.902	0/0:203:201,2:201:7175:2:72:0,-54.3013,-638.984	0/0:139:138,1:138:4952:1:36:0,-38.2449,-442.23	0/1:31:15,16:15:540:16:576:-42.6828,0,-39.6046	0/1:88:43,45:43:1532:45:1603:-117.639,0,-111.682	0/1:70:38,32:38:1368:32:1131:-80.4736,0,-102.349	0/1:30:15,15:15:525:15:540:-39.4556,0,-38.5472	0/0:135:135,0:135:4796:0:0:0,-40.639,-431.797	0/1:64:39,25:39:1396:25:887:-59.9694,0,-106.673	0/0:258:258,0:258:9204:0:0:0,-77.6657,-828.332	0/0:165:165,0:165:5899:0:0:0,-49.6699,-531.02	0/1:94:42,52:42:1500:52:1855:-137.865,0,-106.998	0/0:83:82,0:82:2940:0:0:0,-24.6845,-264.474	0/1:6:1,5:1:36:5:180:-14.7043,0,-1.79209	0/1:87:38,49:38:1360:49:1751:-131.178,0,-96.511	0/0:157:157,0:157:5628:0:0:0,-47.2617,-506.64	0/1:291:148,143:148:5303:143:5098:-367.856,0,-389.804	0/1:131:54,76:54:1944:76:2710:-203.122,0,-135.742	0/1:77:43,34:43:1535:34:1211:-85.4355,0,-115.263	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:140:138,2:138:4936:2:63:0,-36.1733,-438.417	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:80:40,40:40:1418:40:1420:-103.447,0,-103.833	0/1:71:38,33:38:1364:33:1188:-85.6042,0,-101.688	0/1:50:29,21:29:1035:21:752:-52.7396,0,-78.4116	0/1:92:47,45:47:1684:45:1612:-116.461,0,-124.152	0/1:72:20,52:20:711:52:1864:-145.487,0,-42.6415	0/0:98:98,0:98:3497:0:0:0,-29.5009,-314.94	0/0:126:126,0:126:4524:0:0:0,-37.9298,-407.325
chr11	29404026	.	GGATTAA	AGATTAA,AGATTTAA	223910	PASS	AB=0.506157,0.488127;ABP=4.5076,8.57935;AC=140,46;AF=0.752688,0.247312;AN=186;AO=8088,2235;CIGAR=1X6M,1X2M1I4M;DP=10376;DPB=10696.6;DPRA=0,0.86328;EPP=17565.9,4856.25;EPPR=11.6962;GTI=1;LEN=1,8;MEANALT=1.97849,2.46154;MQM=59.9886,50.8058;MQMR=60;NS=93;NUMALT=2;ODDS=3.11797;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=54,54;PQR=0;PRO=0;QA=289831,79338;QR=142;RO=4;RPL=8088,2235;RPP=17565.9,4856.25;RPPR=11.6962;RPR=0,0;RUN=1,1;SAF=0,0;SAP=17565.9,4856.25;SAR=8088,2235;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/1:133:0,132,0:0:0:132,0:4736,0:-426.075,-39.736,0,-426.075,-39.736,-426.075	1/2:130:0,65,64:0:0:65,64:2323,2276:-374.128,-184.721,-165.154,-189.445,0,-170.179	1/2:207:0,86,120:0:0:86,120:3064,4250:-594.246,-344.5,-318.612,-249.873,0,-213.749	1/2:51:0,29,22:0:0:29,22:1040,781:-148.585,-63.7565,-55.0266,-85.1845,0,-78.5618	1/2:65:0,37,27:0:0:37,27:1332,970:-187.598,-78.9128,-67.7747,-108.684,0,-100.557	1/1:271:0,271,0:0:0:271,0:9695,0:-872.492,-81.5791,0,-872.492,-81.5791,-872.492	1/1:176:1,172,0:1:36:172,0:6149,0:-549.942,-48.8289,0,-550.243,-51.7772,-553.18	1/2:147:0,86,61:0:0:86,61:3084,2139:-425.364,-173.819,-147.93,-251.898,0,-233.535	1/1:153:0,152,0:0:0:152,0:5445,0:-489.818,-45.7566,0,-489.818,-45.7566,-489.818	1/2:53:0,28,25:0:0:28,25:1004,893:-154.736,-72.8458,-64.4169,-82.247,0,-74.7213	1/1:87:0,87,0:0:0:87,0:3120,0:-281.026,-26.1896,0,-281.026,-26.1896,-281.026	1/2:72:0,37,35:0:0:37,35:1332,1258:-211.365,-102.679,-91.5412,-109.044,0,-98.5082	1/1:72:0,71,1:0:0:71,1:2552,36:-229.571,-21.3731,0,-226.645,-18.0877,-226.343	1/1:80:0,80,0:0:0:80,0:2868,0:-258.357,-24.0824,0,-258.357,-24.0824,-258.357	1/1:55:0,55,0:0:0:55,0:1972,0:-177.755,-16.5567,0,-177.755,-16.5567,-177.755	1/2:62:0,39,23:0:0:39,23:1404,799:-179.235,-64.6662,-52.9261,-114.919,0,-107.995	1/2:62:0,28,34:0:0:28,34:1008,1212:-181.118,-98.8684,-90.4396,-82.6075,0,-72.3725	1/1:45:1,44,0:1:36:44,0:1584,0:-139.253,-9.94808,0,-139.554,-13.2453,-142.492	1/1:283:0,283,0:0:0:283,0:10155,0:-913.876,-85.1915,0,-913.876,-85.1915,-913.876	1/2:225:0,130,93:0:0:130,93:4642,3280:-644.7,-266.243,-227.109,-378.591,0,-350.596	1/1:85:0,85,0:0:0:85,0:3040,0:-273.83,-25.5876,0,-273.83,-25.5876,-273.83	1/2:103:0,49,54:0:0:49,54:1764,1934:-300.988,-157.052,-142.302,-144.293,0,-128.038	1/1:136:0,125,7:0:0:125,7:4471,252:-402.203,-37.6288,0,-381.931,-17.3604,-379.824	1/1:89:0,89,0:0:0:89,0:3179,0:-286.334,-26.7917,0,-286.334,-26.7917,-286.334	1/2:363:0,174,187:0:0:174,187:6248,6621:-1047.02,-537.338,-484.959,-509.684,0,-453.392	1/2:165:0,107,58:0:0:107,58:3848,2064:-481.891,-167.944,-135.733,-314.304,0,-296.844	1/2:46:0,23,22:0:0:23,22:828,787:-131.409,-63.8436,-56.9199,-67.6659,0,-61.0432	1/2:282:0,149,131:0:0:149,131:5339,4652:-812.988,-377.558,-332.705,-435.441,0,-396.006	1/2:165:0,90,74:0:0:90,74:3200,2600:-471.284,-210.507,-183.414,-260.77,0,-238.494	1/1:162:0,162,0:0:0:162,0:5802,0:-522.292,-48.7669,0,-522.292,-48.7669,-522.292	1/2:6:0,3,3:0:0:3,3:108,108:-17.9519,-9.13906,-8.23597,-9.17208,0,-8.26899	1/2:9:0,3,6:0:0:3,6:108,205:-25.6878,-16.8688,-15.9657,-9.17208,0,-7.3659	1/2:6:0,2,4:0:0:2,4:72,142:-17.7719,-11.8951,-11.293,-6.23466,0,-5.03054	1/2:9:0,1,8:0:0:1,8:36,271:-25.1933,-22.2534,-21.9524,-3.29724,0,-0.889005	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:220:0,219,0:0:0:219,0:7849,0:-706.074,-65.9256,0,-706.074,-65.9256,-706.074	1/1:195:0,195,0:0:0:195,0:6991,0:-629.252,-58.7009,0,-629.252,-58.7009,-629.252	1/2:74:1,36,37:1:36:36,37:1296,1310:-208.905,-103.455,-95.5559,-102.81,0,-94.6089	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:144:0,73,70:0:0:73,70:2610,2496:-414.119,-201.302,-179.327,-212.812,0,-191.74	1/1:44:0,44,0:0:0:44,0:1584,0:-142.852,-13.2453,0,-142.852,-13.2453,-142.852	1/1:115:0,115,0:0:0:115,0:4110,0:-370.084,-34.6185,0,-370.084,-34.6185,-370.084	1/1:105:1,104,0:1:34:104,0:3736,0:-333.041,-28.2092,0,-333.342,-31.3071,-336.099	1/1:71:0,71,0:0:0:71,0:2523,0:-227.322,-21.3731,0,-227.322,-21.3731,-227.322	1/1:174:0,172,0:0:0:172,0:6140,0:-552.34,-51.7772,0,-552.34,-51.7772,-552.34	1/2:134:0,69,65:0:0:69,65:2466,2298:-387.315,-186.248,-165.477,-201.422,0,-181.855	1/1:242:0,241,0:0:0:241,0:8602,0:-773.79,-72.5482,0,-773.79,-72.5482,-773.79	1/1:173:0,173,0:0:0:173,0:6182,0:-556.477,-52.0782,0,-556.477,-52.0782,-556.477	1/2:142:0,74,68:0:0:74,68:2647,2425:-412.803,-196.96,-174.683,-216.2,0,-195.73	1/1:216:0,216,0:0:0:216,0:7760,0:-698.424,-65.0225,0,-698.424,-65.0225,-698.424	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:157:0,155,0:0:0:155,0:5560,0:-500.163,-46.6597,0,-500.163,-46.6597,-500.163	1/1:74:0,74,0:0:0:74,0:2660,0:-239.645,-22.2762,0,-239.645,-22.2762,-239.645	1/2:19:0,6,13:0:0:6,13:208,456:-54.0843,-37.1784,-35.3723,-17.2529,0,-13.3395	1/1:134:0,134,0:0:0:134,0:4816,0:-433.593,-40.338,0,-433.593,-40.338,-433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chr11	29432552	.	G	T	42872.8	PASS	AB=0.472354;ABP=39.5106;AC=47;AF=0.25;AN=188;AO=2621;CIGAR=1X;DP=12562;DPB=12562;DPRA=0.900892;EPP=5694.44;EPPR=21578.8;GTI=3;LEN=1;MEANALT=1.07843;MQM=59.8062;MQMR=59.9622;NS=94;NUMALT=1;ODDS=1.26823;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93658;QR=355080;RO=9936;RPL=2621;RPP=5694.44;RPPR=21561.4;RPR=0;RUN=1;SAF=2621;SAP=5694.44;SAR=0;SRF=9934;SRP=21561.4;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:68:68,0:68:2422:0:0:0,-20.47,-218.235	0/0:229:229,0:229:8203:0:0:0,-68.9359,-738.268	0/1:164:89,75:89:3177:75:2696:-193.499,0,-236.784	0/1:251:140,111:140:5012:111:3951:-280.208,0,-375.668	0/1:129:60,69:60:2147:69:2472:-183.861,0,-154.664	0/1:89:50,39:50:1784:39:1404:-99.8676,0,-134.051	0/0:142:142,0:142:5057:0:0:0,-42.7463,-455.274	0/1:167:104,63:104:3721:63:2243:-151.802,0,-284.818	0/1:159:81,78:81:2884:78:2789:-203.368,0,-211.814	0/0:156:155,1:155:5536:1:36:0,-43.3624,-494.766	0/1:32:19,13:19:675:13:468:-32.8267,0,-51.4422	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:76:36,40:36:1292:40:1432:-106.275,0,-93.7055	0/0:69:69,0:69:2451:0:0:0,-20.7711,-220.845	0/0:86:86,0:86:3071:0:0:0,-25.8886,-276.618	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:57:30,27:30:1068:27:972:-70.6052,0,-79.2734	0/1:68:31,37:31:1108:37:1315:-98.181,0,-79.561	0/0:49:49,0:49:1728:0:0:0,-14.7505,-155.802	0/0:427:427,0:427:15289:0:0:0,-128.54,-1375.62	0/1:193:110,83:110:3916:83:2980:-210.302,0,-294.537	0/0:266:266,0:266:9494:0:0:0,-80.074,-854.421	0/1:141:67,73:67:2392:73:2604:-192.247,0,-173.158	0/0:188:172,15:172:6124:15:540:0,-7.56605,-502.335	0/0:118:118,0:118:4208:0:0:0,-35.5215,-378.899	0/1:429:235,194:235:8400:194:6895:-491.465,0,-626.488	0/1:242:119,123:119:4284:123:4400:-323.319,0,-312.886	0/1:61:33,27:33:1184:27:972:-69.3901,0,-88.4607	0/1:423:231,192:231:8265:192:6860:-490.022,0,-616.523	0/1:141:80,61:80:2868:61:2188:-154.74,0,-215.912	0/0:166:166,0:166:5923:0:0:0,-49.971,-533.173	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:6:1,5:1:36:5:180:-14.7342,0,-1.79209	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:220:220,0:220:7836:0:0:0,-66.2266,-705.271	0/0:308:308,0:308:10998:0:0:0,-92.7172,-989.713	0/1:35:21,14:21:756:14:500:-34.8001,0,-57.8312	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:160:91,69:91:3252:69:2464:-173.845,0,-244.721	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:262:262,0:262:9379:0:0:0,-78.8699,-843.942	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:91:91,0:91:3229:0:0:0,-27.3937,-290.83	0/0:161:161,0:161:5779:0:0:0,-48.4658,-520.211	0/1:213:87,126:87:3108:126:4520:-342.822,0,-215.828	0/0:285:285,0:285:10173:0:0:0,-85.7935,-915.43	0/0:178:178,0:178:6368:0:0:0,-53.5833,-573.211	0/1:165:87,78:87:3086:78:2799:-202.475,0,-228.294	0/0:252:252,0:252:8982:0:0:0,-75.8596,-808.359	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:397:397,0:397:14235:0:0:0,-119.509,-1280.79	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:179:177,2:177:6324:2:72:0,-47.0476,-562.406	0/0:40:40,0:40:1413:0:0:0,-12.0412,-127.465	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:76:50,26:50:1784:26:932:-61.2921,0,-137.963	0/0:117:117,0:117:4200:0:0:0,-35.2205,-378.18	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:331:185,146:185:6572:146:5193:-367.859,0,-491.922	0/0:277:277,0:277:9885:0:0:0,-83.3853,-889.592	0/1:89:36,53:36:1284:53:1882:-142.865,0,-89.0717	0/1:156:94,61:94:3364:61:2172:-148.724,0,-255.955	0/0:281:278,3:278:9932:3:104:0,-74.8866,-884.115	0/0:185:184,1:184:6573:1:36:0,-52.0923,-588.031	0/1:19:13,6:13:464:6:216:-14.0663,0,-36.3779	0/1:117:45,72:45:1595:72:2588:-197.932,0,-108.619	0/1:77:52,25:52:1855:25:884:-56.6981,0,-143.822	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.35	0/1:91:47,44:47:1684:44:1580:-115.097,0,-124.453	0/0:212:212,0:212:7580:0:0:0,-63.8184,-682.238	0/0:351:350,0:350:12490:0:0:0,-105.36,-1123.63	0/1:125:62,63:62:2204:63:2236:-163.865,0,-160.991	0/0:99:99,0:99:3551:0:0:0,-29.802,-319.794	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:175:83,92:83:2980:92:3295:-244.08,0,-215.752	0/0:182:182,0:182:6532:0:0:0,-54.7875,-587.953	0/1:330:152,178:152:5424:178:6361:-473.204,0,-388.947	0/1:114:56,58:56:2004:58:2076:-152.788,0,-146.316	0/1:87:44,43:44:1576:43:1529:-111.707,0,-115.942	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/0:155:155,0:155:5539:0:0:0,-46.6596,-498.635	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/1:70:43,27:43:1544:27:955:-65.1846,0,-118.181	0/1:73:44,29:44:1572:29:1040:-71.9392,0,-119.796	0/1:33:25,8:25:896:8:288:-16.3334,0,-71.0264	0/1:54:29,25:29:1040:25:887:-63.8879,0,-77.6569	0/1:43:15,28:15:540:28:1004:-77.7269,0,-35.9922	0/0:196:196,0:196:7020:0:0:0,-59.0019,-631.855	0/0:112:112,0:112:4012:0:0:0,-33.7154,-361.269
chr11	29432578	.	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chr11	29522986	.	T	A	76455.3	PASS	AB=0.601358;ABP=187.01;AC=138;AF=0.734043;AN=188;AO=3594;CIGAR=1X;DP=4433;DPB=4433;DPRA=23.8226;EPP=7807.28;EPPR=1824.88;GTI=9;LEN=1;MEANALT=1;MQM=56.5036;MQMR=59.5197;NS=94;NUMALT=1;ODDS=0.546029;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128814;QR=29981;RO=839;RPL=6;RPP=7755.25;RPPR=1824.88;RPR=3588;RUN=1;SAF=3588;SAP=7755.25;SAR=6;SRF=839;SRP=1824.88;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1644:-147.499,-13.8474,0	1/1:48:0,48:0:0:48:1724:-155.373,-14.4494,0	0/1:60:13,47:13:464:47:1684:-133.27,0,-23.989	0/1:101:56,45:56:1996:45:1616:-115.123,0,-149.403	1/1:25:1,24:1:36:24:864:-74.2146,-3.92748,0	0/1:26:10,16:10:356:16:576:-44.1947,0,-24.5545	1/1:50:0,50:0:0:50:1777:-160.136,-15.0515,0	0/1:63:18,45:18:648:45:1605:-124.687,0,-39.6511	0/1:44:13,31:13:464:31:1104:-86.1236,0,-28.8162	1/1:43:0,43:0:0:43:1548:-139.547,-12.9443,0	0/1:18:4,14:4:140:14:500:-39.8968,0,-7.52604	1/1:35:0,35:0:0:35:1260:-113.652,-10.5361,0	0/1:37:17,20:17:612:20:720:-53.9597,0,-44.2035	1/1:26:1,25:1:36:25:900:-77.5557,-4.22851,0	1/1:32:2,30:2:72:30:1080:-90.5018,-2.79624,0	0/1:25:3,22:3:104:22:792:-63.0241,0,-2.17706	0/1:6:3,3:3:108:3:108:-8.2642,0,-8.26899	0/1:13:7,6:7:252:6:216:-15.8677,0,-19.1156	0/1:8:1,7:1:32:7:252:-20.6098,0,-0.791073	1/1:83:0,83:0:0:83:2968:-266.971,-24.9855,0	0/1:92:48,44:48:1712:44:1580:-114.596,0,-126.171	1/1:83:0,83:0:0:83:2984:-268.664,-24.9855,0	0/1:73:26,47:26:924:47:1688:-130.032,0,-61.5025	1/1:19:0,19:0:0:19:680:-61.5007,-5.71957,0	1/1:67:0,67:0:0:67:2412:-216.979,-20.169,0	0/1:127:61,66:61:2172:66:2363:-173.479,0,-157.409	0/1:117:34,83:34:1216:83:2957:-230.275,0,-74.5261	0/1:9:7,2:7:252:2:72:-4.1242,0,-20.3197	0/1:161:65,96:65:2313:96:3444:-261.306,0,-159.963	0/1:68:19,49:19:680:49:1749:-137.02,0,-41.0591	1/1:81:1,80:1:36:80:2865:-253.469,-20.7852,0	0/1:3:1,2:1:36:2:72:-5.93038,0,-2.69518	0/1:6:2,4:2:72:4:144:-11.5011,0,-4.99287	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:13:0,13:0:0:13:468:-42.4395,-3.91339,0	1/1:16:0,16:0:0:16:576:-52.1502,-4.81648,0	1/1:84:1,83:1:36:83:2988:-264.118,-21.6882,0	1/1:112:0,112:0:0:112:4005:-360.087,-33.7154,0	0/1:5:2,3:2:72:3:108:-8.56207,0,-5.33157	1/1:8:0,8:0:0:8:284:-25.8918,-2.40824,0	0/1:50:22,28:22:788:28:1004:-75.5823,0,-56.1933	1/1:9:0,9:0:0:9:320:-28.9998,-2.70927,0	1/1:56:0,56:0:0:56:2004:-180.55,-16.8577,0	1/1:24:0,24:0:0:24:864:-78.0461,-7.22472,0	1/1:16:0,16:0:0:16:572:-51.7896,-4.81648,0	1/1:78:0,78:0:0:78:2788:-250.557,-23.4803,0	0/1:80:17,63:17:612:63:2252:-178.64,0,-31.331	1/1:102:0,102:0:0:102:3660:-329.321,-30.7051,0	1/1:56:0,56:0:0:56:2008:-180.909,-16.8577,0	0/1:71:29,42:29:1040:42:1493:-113.23,0,-72.5412	1/1:27:1,26:1:36:26:936:-80.921,-4.52954,0	1/1:8:0,8:0:0:8:288:-26.2549,-2.40824,0	1/1:64:0,64:0:0:64:2285:-205.814,-19.2659,0	1/1:49:0,49:0:0:49:1764:-158.971,-14.7505,0	0/1:14:6,8:6:216:8:288:-22.0405,0,-15.5761	1/1:76:1,75:1:36:75:2688:-237.011,-19.28,0	1/1:32:0,32:0:0:32:1152:-103.926,-9.63296,0	0/1:9:4,5:4:144:5:180:-13.8349,0,-10.6043	1/1:12:0,12:0:0:12:432:-39.2026,-3.61236,0	0/1:39:7,32:7:248:32:1144:-91.4818,0,-10.4269	0/1:36:4,32:4:144:32:1152:-90.3762,0,-2.47654	0/1:9:4,5:4:144:5:176:-13.4688,0,-10.5677	0/1:121:71,50:71:2533:50:1792:-125.064,0,-191.758	1/1:80:0,80:0:0:80:2872:-258.339,-24.0824,0	0/1:29:12,17:12:432:17:612:-46.1662,0,-30.4553	0/1:46:16,30:16:568:30:1080:-83.6202,0,-37.6045	1/1:138:0,138:0:0:138:4921:-442.199,-41.5421,0	1/1:78:1,77:1:36:77:2757:-244.656,-19.8821,0	0/1:5:1,4:1:36:4:144:-11.8028,0,-2.09312	0/1:16:10,6:10:360:6:216:-14.9646,0,-27.9278	0/1:26:12,14:12:428:14:504:-36.5674,0,-30.9361	0/1:21:11,10:11:396:10:360:-26.4078,0,-29.6611	1/1:84:0,84:0:0:84:3000:-269.536,-25.2865,0	0/1:40:15,25:15:536:25:896:-68.8821,0,-36.5336	1/1:92:0,92:0:0:92:3293:-296.067,-27.6948,0	1/1:96:2,94:2:72:94:3376:-296.438,-22.0622,0	0/1:41:5,36:5:180:36:1288:-103.69,0,-4.20983	1/1:40:0,40:0:0:40:1436:-129.092,-12.0412,0	0/1:8:7,1:7:252:1:36:-1.18832,0,-20.6207	0/1:60:33,27:33:1188:27:968:-69.3348,0,-89.1668	1/1:71:0,71:0:0:71:2544:-228.488,-21.3731,0	0/1:83:35,48:35:1256:48:1716:-129.541,0,-88.3598	0/1:31:16,15:16:576:15:540:-39.2689,0,-42.8071	0/1:29:11,18:11:392:18:648:-48.5268,0,-26.8902	1/1:18:0,18:0:0:18:644:-58.2523,-5.41854,0	1/1:57:3,54:3:108:54:1936:-164.232,-7.08354,0	1/1:6:0,6:0:0:6:216:-19.7811,-1.80618,0	0/1:39:18,21:18:631:21:756:-56.466,0,-45.3755	0/1:25:7,18:7:248:18:648:-50.9696,0,-15.1236	0/1:13:4,9:4:144:9:324:-25.5784,0,-9.40023	0/1:26:10,16:10:360:16:576:-44.0659,0,-24.9175	0/1:33:25,8:25:892:8:284:-15.9578,0,-70.6298	1/1:102:0,102:0:0:102:3672:-330.137,-30.7051,0	1/1:27:1,26:1:36:26:932:-80.5613,-4.52954,0
chr11	29591137	.	T	A	31192.1	PASS	AB=0.480102;ABP=16.4912;AC=50;AF=0.265957;AN=188;AO=1893;CIGAR=1X;DP=8048;DPB=8048;DPRA=1.06065;EPP=4113.61;EPPR=13351.1;GTI=2;LEN=1;MEANALT=1.01786;MQM=59.9672;MQMR=59.9886;NS=94;NUMALT=1;ODDS=0.0144234;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67666;QR=219627;RO=6151;RPL=0;RPP=4113.61;RPPR=13359.7;RPR=1893;RUN=1;SAF=1893;SAP=4113.61;SAR=0;SRF=6150;SRP=13351.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.915	0/0:86:86,0:86:3057:0:0:0,-25.8886,-275.359	0/1:117:56,61:56:1982:61:2192:-162.325,0,-143.43	0/1:186:96,90:96:3444:90:3213:-233.4,0,-254.181	0/1:47:32,15:32:1136:15:540:-34.7881,0,-88.4005	0/1:30:19,11:19:680:11:396:-26.9518,0,-52.4983	0/0:79:79,0:79:2795:0:0:0,-23.7814,-251.786	0/1:118:66,52:66:2345:52:1853:-131.498,0,-175.786	0/1:158:84,74:84:2966:74:2641:-190.372,0,-219.609	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/1:65:37,28:37:1332:28:1004:-71.1089,0,-100.615	0/0:122:122,0:122:4368:0:0:0,-36.7257,-393.294	0/1:103:58,45:58:2076:45:1616:-114.724,0,-156.104	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:77:77,0:77:2764:0:0:0,-23.1793,-249.001	0/1:42:27,15:27:964:15:540:-36.2933,0,-74.4336	0/1:30:11,19:11:396:19:684:-52.8594,0,-26.9518	0/0:35:35,0:35:1251:0:0:0,-10.536,-112.894	0/0:129:129,0:129:4598:0:0:0,-38.8329,-413.983	0/1:144:77,67:77:2745:67:2404:-173.268,0,-203.943	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.375	0/1:114:60,54:60:2148:54:1897:-136.687,0,-159.27	0/0:74:73,1:73:2612:1:36:0,-18.6779,-231.73	0/0:97:97,0:97:3442:0:0:0,-29.1999,-309.992	0/1:209:117,92:117:4161:92:3288:-233.222,0,-311.758	0/1:242:120,122:120:4289:122:4365:-320.175,0,-313.337	0/1:53:28,24:28:1000:24:859:-61.6565,0,-74.3406	0/1:154:88,66:88:3149:66:2372:-167.379,0,-237.275	0/1:91:39,52:39:1400:52:1853:-139.632,0,-98.9055	0/0:80:79,0:79:2798:0:0:0,-23.7814,-251.698	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:16:6,10:6:212:10:360:-27.9278,0,-14.6083	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:193:193,0:193:6916:0:0:0,-58.0988,-622.506	0/0:73:73,0:73:2600:0:0:0,-21.9752,-234.249	0/1:75:38,37:38:1364:37:1328:-97.245,0,-100.483	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:71:41,30:41:1468:30:1065:-74.7866,0,-111.043	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:169:169,0:169:6026:0:0:0,-50.8741,-542.444	0/0:70:70,0:70:2500:0:0:0,-21.0721,-225.253	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.534	0/0:106:104,0:104:3716:0:0:0,-31.3071,-334.254	0/1:87:49,38:49:1752:38:1364:-96.5004,0,-131.775	0/0:175:175,0:175:6231:0:0:0,-52.6802,-560.755	0/0:117:117,0:117:4157:0:0:0,-35.2205,-374.314	0/1:113:52,61:52:1864:61:2176:-162.088,0,-134.023	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:103:103,0:103:3685:0:0:0,-31.0061,-331.851	0/0:60:59,1:59:2086:1:32:0,-14.8625,-184.807	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.479	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/1:6:4,2:4:129:2:72:-5.03054,0,-10.1215	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:117:60,57:60:2152:57:2044:-149.011,0,-158.727	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.724	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/1:128:80,48:80:2868:48:1716:-116.194,0,-219.825	0/0:147:147,0:147:5264:0:0:0,-44.2514,-473.896	0/1:59:33,26:33:1184:26:936:-66.7987,0,-89.1075	0/1:72:33,39:33:1188:39:1396:-104.265,0,-85.5544	0/0:143:141,2:141:5037:2:72:0,-36.2106,-446.639	0/0:128:127,1:127:4544:1:36:0,-34.9336,-405.529	0/1:74:38,36:38:1356:36:1294:-94.4877,0,-100.064	0/1:86:47,39:47:1692:39:1389:-99.4184,0,-126.678	0/1:48:28,20:28:1000:20:705:-49.3233,0,-75.8659	0/1:23:8,15:8:284:15:521:-40.2926,0,-18.9797	0/0:149:148,1:148:5285:1:36:0,-41.2552,-472.187	0/1:76:33,43:33:1184:43:1525:-114.663,0,-83.99	0/0:152:151,1:151:5359:1:21:0,-43.6566,-480.342	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.668	0/1:94:50,44:50:1758:44:1546:-111.131,0,-130.203	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:44:27,17:27:972:17:612:-42.1681,0,-74.5526	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.943	0/1:183:95,88:95:3412:88:3142:-227.915,0,-252.205	0/1:54:31,23:31:1112:23:828:-58.5885,0,-84.1357	0/1:87:39,48:39:1392:48:1720:-128.896,0,-99.3894	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/0:152:151,1:151:5377:1:36:0,-42.1583,-480.465	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:76:39,37:39:1396:37:1332:-97.3041,0,-103.061	0/1:79:43,36:43:1544:36:1292:-92.7848,0,-115.472	0/1:55:23,32:23:820:32:1152:-87.4335,0,-57.5659	0/1:118:55,63:55:1976:63:2249:-167.15,0,-142.593	0/1:135:45,90:45:1593:90:3236:-250.822,0,-103.019	0/0:159:159,0:159:5654:0:0:0,-47.8638,-508.981	0/0:128:127,1:127:4533:1:36:0,-34.9336,-404.538
chr11	29637186	.	T	C	107866	PASS	AB=0.625984;ABP=353.182;AC=140;AF=0.744681;AN=188;AO=5043;CIGAR=1X;DP=6001;DPB=6001;DPRA=0;EPP=10953.7;EPPR=2078.94;GTI=7;LEN=1;MEANALT=1.02128;MQM=59.9915;MQMR=59.9498;NS=94;NUMALT=1;ODDS=0.803726;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180053;QR=34110;RO=956;RPL=0;RPP=10953.7;RPPR=2078.94;RPR=5043;RUN=1;SAF=5043;SAP=10953.7;SAR=0;SRF=956;SRP=2078.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	1/1:33:0,33:0:0:33:1177:-106.237,-9.93399,0	0/1:67:23,44:23:820:44:1580:-122.323,0,-53.9535	0/1:99:28,71:28:1004:71:2535:-198.599,0,-60.8739	0/1:45:21,24:21:748:24:849:-63.1823,0,-54.0105	0/1:39:12,27:12:424:27:939:-73.0806,0,-26.7562	1/1:84:0,84:0:0:84:2978:-268.25,-25.2865,0	0/1:109:39,70:39:1400:70:2512:-193.52,0,-93.4778	0/1:42:6,36:6:207:36:1296:-104.301,0,-6.32363	1/1:83:0,83:0:0:83:2955:-266.182,-24.9855,0	0/1:34:11,23:11:396:23:828:-64.6091,0,-25.7477	1/1:58:0,58:0:0:58:2071:-186.66,-17.4597,0	0/1:48:17,31:17:603:31:1105:-85.3101,0,-40.1501	1/1:84:0,84:0:0:84:2996:-269.872,-25.2865,0	1/1:51:0,51:0:0:51:1814:-163.54,-15.3525,0	1/1:49:0,49:0:0:49:1725:-155.533,-14.7505,0	0/1:63:23,40:23:819:40:1436:-110.573,0,-55.0667	0/1:54:25,29:25:887:29:1040:-77.6587,0,-63.8924	1/1:33:0,33:0:0:33:1158:-104.523,-9.93399,0	1/1:92:0,92:0:0:92:3304:-297.578,-27.6948,0	0/1:69:18,51:18:636:51:1811:-142.498,0,-36.7951	1/1:78:0,78:0:0:78:2782:-250.621,-23.4803,0	0/1:37:11,26:11:396:26:916:-71.6165,0,-24.8446	0/1:36:4,32:4:144:32:1139:-91.9813,0,-2.47654	1/1:60:0,60:0:0:60:2131:-192.057,-18.0618,0	0/1:130:58,72:58:2088:72:2580:-193.315,0,-149.056	0/1:107:43,64:43:1535:64:2288:-173.971,0,-106.232	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/1:123:46,77:46:1643:77:2761:-211.704,0,-111.131	0/1:42:18,24:18:640:24:864:-65.4393,0,-45.2861	1/1:142:0,142:0:0:142:5092:-458.423,-42.7463,0	0/1:12:3,9:3:99:9:324:-25.8935,0,-5.62422	0/1:15:5,10:5:176:10:342:-26.5936,0,-11.6696	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:173:0,173:0:0:173:6162:-554.676,-52.0782,0	1/1:138:0,138:0:0:138:4912:-442.231,-41.5421,0	0/1:49:17,32:17:608:32:1135:-87.7076,0,-40.3016	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	0/1:57:26,31:26:932:31:1116:-83.593,0,-67.0402	1/1:44:0,44:0:0:44:1575:-142.042,-13.2453,0	1/1:112:0,111:0:0:111:3947:-355.21,-33.4143,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	1/1:57:0,57:0:0:57:2033:-183.24,-17.1587,0	1/1:126:0,126:0:0:126:4532:-408.045,-37.9298,0	0/1:73:21,52:21:734:52:1864:-146.064,0,-44.4052	1/1:156:0,155:0:0:155:5513:-495.937,-46.6597,0	1/1:92:0,92:0:0:92:3312:-298.297,-27.6948,0	0/1:43:12,31:12:432:31:1112:-87.4471,0,-26.2769	1/1:117:1,116:1:36:116:4167:-371.613,-31.6222,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:100:0,100:0:0:100:3581:-322.497,-30.103,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:74:0,74:0:0:74:2639:-237.756,-22.2762,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:54:9,45:9:324:45:1616:-129.474,0,-13.2502	1/1:133:0,133:0:0:133:4768:-429.276,-40.037,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:110:38,72:38:1359:72:2580:-199.336,0,-89.4965	1/1:98:4,94:4:144:94:3337:-287.235,-16.1873,0	0/1:52:24,28:24:843:28:1004:-75.0223,0,-60.5344	0/1:52:22,30:22:780:30:1076:-81.4993,0,-54.8695	1/1:115:0,115:0:0:115:4103:-369.454,-34.6185,0	1/1:105:1,104:1:36:104:3691:-328.793,-28.0099,0	0/1:23:8,15:8:288:15:540:-42.0128,0,-19.3437	0/1:49:15,34:15:540:34:1220:-95.3563,0,-34.1861	0/1:90:42,48:42:1500:48:1707:-126.822,0,-108.202	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:98:0,98:0:0:98:3501:-315.299,-29.5009,0	0/1:44:24,20:24:856:20:720:-51.8835,0,-64.1158	1/1:158:0,158:0:0:158:5640:-507.703,-47.5627,0	1/1:76:0,76:0:0:76:2725:-245.49,-22.8783,0	0/1:91:27,64:27:968:64:2291:-179.057,0,-60.0436	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:57:29,28:29:1044:28:1008:-73.8776,0,-77.1161	1/1:47:0,47:0:0:47:1672:-150.765,-14.1484,0	0/1:104:44,60:44:1568:60:2152:-162.64,0,-110.105	0/1:79:42,37:42:1500:37:1300:-93.5171,0,-111.513	0/1:34:11,23:11:392:23:828:-64.6091,0,-25.385	1/1:61:0,61:0:0:61:2184:-196.826,-18.3628,0	1/1:125:0,125:0:0:125:4440:-399.771,-37.6288,0	1/1:35:0,35:0:0:35:1214:-109.558,-10.5361,0	0/1:68:26,42:26:914:42:1497:-114.553,0,-62.1046	0/1:58:27,31:27:960:31:1097:-81.5783,0,-69.2565	0/1:25:10,15:10:360:15:531:-40.5962,0,-25.2186	0/1:68:23,45:23:815:45:1607:-124.449,0,-53.2007	0/1:38:22,16:22:792:16:576:-40.7358,0,-60.1665	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:88:0,88:0:0:88:3134:-282.286,-26.4906,0
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chr11	29890784	.	A	G	43391.9	PASS	AB=0.538603;ABP=66.2151;AC=51;AF=0.271277;AN=188;AO=2653;CIGAR=1X;DP=8935;DPB=8935;DPRA=1.36309;EPP=5763.93;EPPR=13639.9;GTI=2;LEN=1;MEANALT=1;MQM=43.4538;MQMR=58.2148;NS=94;NUMALT=1;ODDS=1.78701;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94612;QR=223561;RO=6280;RPL=0;RPP=5763.93;RPPR=13639.9;RPR=2653;RUN=1;SAF=2653;SAP=5763.93;SAR=0;SRF=6280;SRP=13639.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:312:0:0:0,-2.70927,-28.3983	0/0:142:142,0:142:5084:0:0:0,-42.7463,-456.809	0/1:105:61,44:61:2184:44:1572:-105.592,0,-163.989	0/1:200:88,112:88:3117:112:4016:-295.245,0,-220.483	0/1:56:19,37:19:676:37:1313:-99.1391,0,-44.2867	0/1:41:17,24:17:600:24:860:-60.6041,0,-41.9512	0/0:186:186,0:186:6629:0:0:0,-55.9916,-596.332	0/1:190:95,95:95:3392:95:3389:-237.57,0,-247.88	0/1:30:14,16:14:500:16:557:-39.6041,0,-35.9608	0/0:140:140,0:140:4946:0:0:0,-42.1442,-445.048	0/1:75:36,39:36:1292:39:1389:-100.796,0,-93.9734	0/0:61:61,0:61:2188:0:0:0,-18.3628,-195.803	0/1:92:53,39:53:1904:39:1404:-92.5981,0,-143.709	0/0:61:61,0:61:2188:0:0:0,-18.3628,-196.187	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.706	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.095	0/1:73:30,43:30:1064:43:1518:-110.347,0,-74.0295	0/1:67:30,37:30:1080:37:1328:-95.7348,0,-77.169	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.08	0/0:167:166,1:166:5898:1:36:0,-47.2175,-527.298	0/1:106:49,57:49:1733:57:2022:-143.605,0,-124.266	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.741	0/1:25:8,17:8:280:17:612:-46.9381,0,-18.0136	0/0:88:84,4:84:2977:4:144:0,-13.5002,-254.925	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.601	0/1:348:142,206:142:5032:206:7366:-550.363,0,-348.052	0/1:208:81,127:81:2885:127:4502:-330.899,0,-196.326	0/1:45:25,20:25:896:20:716:-49.7752,0,-67.3226	0/1:303:155,148:155:5529:148:5318:-382.141,0,-406.49	0/1:208:114,94:114:4060:94:3368:-234.167,0,-302.865	0/0:63:61,2:61:2146:2:72:0,-12.2227,-186.542	0/1:9:7,2:7:252:2:72:-3.98065,0,-20.2435	0/1:9:5,4:5:180:4:140:-9.99084,0,-13.768	0/1:8:2,6:2:72:6:201:-15.466,0,-4.42355	1/1:3:0,3:0:0:3:108:-9.69266,-0.90309,0	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.873	0/0:227:226,1:226:8085:1:36:0,-64.767,-723.929	0/0:153:153,0:153:5412:0:0:0,-46.0576,-486.852	0/1:72:35,37:35:1256:37:1328:-93.9879,0,-91.3292	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.6952	0/1:154:55,99:55:1949:99:3528:-264.395,0,-129.21	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.6981	0/0:105:105,0:105:3740:0:0:0,-31.6081,-336.702	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.335	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.781	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:82:33,49:33:1172:49:1756:-128.344,0,-80.8658	0/0:161:160,1:160:5705:1:36:0,-44.9173,-509.797	0/0:116:115,1:115:4089:1:36:0,-31.371,-364.5	0/1:183:82,101:82:2908:101:3572:-260.188,0,-206.778	0/0:180:180,0:180:6360:0:0:0,-54.1854,-571.95	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:81:81,0:81:2881:0:0:0,-24.3834,-258.796	0/0:70:70,0:70:2458:0:0:0,-21.0721,-221.303	0/1:8:1,7:1:36:7:248:-19.5394,0,-1.18744	0/0:134:134,0:134:4757:0:0:0,-40.338,-427.939	0/0:15:15,0:15:510:0:0:0,-4.51545,-46.2187	0/1:8:4,4:4:140:4:144:-10.789,0,-10.5363	0/0:30:30,0:30:1064:0:0:0,-9.0309,-95.2591	0/1:66:27,39:27:960:39:1373:-101.453,0,-66.8153	0/0:141:141,0:141:5056:0:0:0,-42.4452,-455.053	0/1:3:2,1:2:72:1:36:-2.64543,0,-5.93363	0/1:248:143,105:143:5067:105:3763:-260.3,0,-381.449	0/1:210:90,120:90:3197:120:4288:-316.529,0,-224.665	0/1:82:45,37:45:1600:37:1298:-89.8612,0,-119.271	0/1:70:28,42:28:988:42:1493:-110.772,0,-68.1394	0/0:125:122,3:122:4330:3:108:0,-27.6929,-379.51	0/0:79:78,1:78:2789:1:36:0,-20.2329,-247.699	0/1:29:8,21:8:288:21:741:-56.5959,0,-17.5302	0/1:84:36,48:36:1292:48:1716:-124.201,0,-91.2158	0/1:84:36,48:36:1292:48:1724:-127.839,0,-91.294	0/1:37:17,20:17:604:20:682:-49.7838,0,-43.5525	0/0:75:75,0:75:2646:0:0:0,-22.5772,-238.073	0/1:76:41,35:41:1464:35:1241:-85.5652,0,-109.086	0/1:118:55,63:55:1957:63:2237:-160.747,0,-140.793	0/0:157:157,0:157:5573:0:0:0,-47.2617,-501.043	0/1:125:55,70:55:1972:70:2493:-179.229,0,-139.884	0/0:145:143,2:143:5116:2:72:0,-37.036,-453.207	0/1:6:4,2:4:140:2:72:-4.80714,0,-11.1302	0/1:129:63,66:63:2237:66:2349:-167.837,0,-162.666	0/0:89:88,1:88:3152:1:36:0,-23.311,-279.627	0/1:255:109,146:109:3881:146:5229:-385.826,0,-272.309	0/1:134:63,71:63:2260:71:2529:-183.663,0,-163.167	0/1:53:22,31:22:784:31:1101:-81.6478,0,-54.8648	0/0:80:79,0:79:2817:0:0:0,-23.7814,-253.083	0/0:152:150,2:150:5368:2:72:0,-39.0144,-476.12	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.5371	0/1:71:35,36:35:1252:36:1277:-90.0904,0,-91.4319	0/1:68:33,35:33:1184:35:1252:-88.0799,0,-86.1079	0/1:49:24,25:24:860:25:896:-63.3942,0,-62.8811	0/1:101:57,44:57:2032:44:1584:-109.028,0,-152.48	0/1:80:19,61:19:676:61:2171:-168.393,0,-37.0856	0/0:183:182,1:182:6415:1:36:0,-52.0339,-574.075	0/0:115:114,0:114:4080:0:0:0,-34.3174,-366.827
chr11	29920810	.	T	C	100105	PASS	AB=0.432099;ABP=165.201;AC=138;AF=0.734043;AN=188;AO=4857;CIGAR=1X;DP=7175;DPB=7175;DPRA=0;EPP=10489.1;EPPR=5034.31;GTI=5;LEN=1;MEANALT=1.01064;MQM=59.9701;MQMR=59.9836;NS=94;NUMALT=1;ODDS=0.384008;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174012;QR=83080;RO=2317;RPL=7;RPP=10489.1;RPPR=5034.31;RPR=4850;RUN=1;SAF=4857;SAP=10549.9;SAR=0;SRF=2317;SRP=5034.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:68:0,68:0:0:68:2422:-218.236,-20.47,0	0/1:181:71,110:71:2548:110:3948:-301.002,0,-175.084	0/1:151:87,64:87:3120:64:2284:-160.366,0,-235.547	0/1:75:49,26:49:1760:26:928:-61.261,0,-136.107	0/1:51:36,15:36:1288:15:532:-32.8606,0,-100.871	1/1:89:0,89:0:0:89:3168:-285.214,-26.7917,0	0/1:83:52,31:52:1868:31:1112:-75.4059,0,-143.414	0/1:78:35,43:35:1260:43:1529:-114.421,0,-90.2251	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:71:43,28:43:1540:28:1004:-69.3027,0,-117.52	1/1:66:0,66:0:0:66:2360:-212.658,-19.868,0	0/1:60:37,23:37:1309:23:824:-56.4215,0,-100.048	1/1:37:0,37:0:0:37:1320:-119.102,-11.1381,0	1/1:65:0,65:0:0:65:2340:-210.857,-19.567,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:58:29,29:29:1044:29:1044:-76.8151,0,-76.8151	0/1:59:35,24:35:1248:24:855:-59.5085,0,-94.8641	1/1:37:0,37:0:0:37:1328:-119.821,-11.1381,0	1/1:119:0,119:0:0:119:4267:-384.205,-35.8226,0	0/1:177:86,91:86:3084:91:3244:-238.899,0,-224.505	1/1:55:0,55:0:0:55:1962:-176.853,-16.5567,0	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	1/1:79:2,77:2:72:77:2764:-242.164,-16.9446,0	1/1:47:0,47:0:0:47:1691:-152.441,-14.1484,0	0/1:181:96,85:96:3440:85:3052:-220.422,0,-255.326	0/1:257:153,104:153:5496:104:3728:-258.356,0,-417.4	0/1:44:29,15:29:1044:15:540:-35.6912,0,-81.0295	0/1:214:93,121:93:3340:121:4348:-327.072,0,-236.396	0/1:111:63,48:63:2241:48:1728:-122.391,0,-168.538	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:22:14,8:14:504:8:284:-19.2807,0,-39.0754	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:202:0,202:0:0:202:7252:-652.73,-60.8081,0	1/1:121:0,121:0:0:121:4344:-391.134,-36.4246,0	0/1:78:40,38:40:1436:38:1364:-99.5804,0,-106.057	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:75:43,32:43:1544:32:1152:-81.4129,0,-116.676	1/1:41:1,40:1:36:40:1436:-125.938,-8.74396,0	1/1:121:0,121:0:0:121:4335:-390.325,-36.4246,0	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	1/1:52:0,51:0:0:51:1824:-164.081,-15.3525,0	0/1:151:91,60:91:3268:60:2146:-147.951,0,-248.884	1/1:149:0,149:0:0:149:5355:-482.08,-44.8535,0	1/1:81:0,81:0:0:81:2895:-260.785,-24.3834,0	0/1:88:62,26:62:2220:26:932:-57.7082,0,-173.574	1/1:108:0,108:0:0:108:3872:-348.674,-32.5112,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:105:0,105:0:0:105:3744:-337.162,-31.6082,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	0/1:9:8,1:8:280:1:36:-0.889005,0,-22.83	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:44:27,17:27:968:17:608:-41.8067,0,-74.1222	1/1:83:0,83:0:0:83:2972:-267.713,-24.9855,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:148:61,87:61:2188:87:3124:-236.833,0,-152.633	0/1:54:32,22:32:1152:22:780:-54.2674,0,-87.7345	0/1:63:41,22:41:1457:22:788:-52.2799,0,-112.459	0/1:68:32,36:32:1148:36:1292:-96.1137,0,-83.1598	1/1:100:1,99:1:36:99:3552:-316.285,-26.5047,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:26:18,8:18:644:8:288:-18.4406,0,-50.4638	0/1:104:52,52:52:1868:52:1872:-137.452,0,-137.092	0/1:98:64,34:64:2300:34:1224:-80.9661,0,-177.76	0/1:27:22,5:22:788:5:180:-8.42425,0,-63.117	1/1:101:0,101:0:0:101:3597:-323.937,-30.404,0	0/1:90:61,29:61:2192:29:1036:-66.4612,0,-170.453	0/1:78:46,32:46:1644:32:1148:-80.1495,0,-124.768	1/1:123:0,123:0:0:123:4424:-398.329,-37.0267,0	0/1:52:29,23:29:1044:23:828:-59.1906,0,-78.6212	1/1:121:0,121:0:0:121:4336:-390.414,-36.4246,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:165:91,74:91:3260:74:2648:-188.897,0,-243.951	1/1:72:0,72:0:0:72:2592:-233.527,-21.6742,0	0/1:186:113,73:113:4060:73:2624:-180.188,0,-309.594	0/1:82:45,37:45:1612:37:1324:-94.689,0,-120.686	0/1:63:42,21:42:1508:21:756:-49.4023,0,-117.05	1/1:79:1,78:1:36:78:2804:-249.001,-20.1831,0	1/1:118:1,117:1:36:117:4169:-371.795,-31.9233,0	1/1:40:0,40:0:0:40:1440:-129.897,-12.0412,0	0/1:83:55,28:55:1980:28:999:-65.239,0,-153.489	0/1:79:43,36:43:1525:36:1292:-92.8024,0,-113.76	0/1:37:18,19:18:640:19:680:-50.3911,0,-46.7912	0/1:91:53,38:53:1908:38:1356:-94.9468,0,-144.604	0/1:86:69,17:69:2476:17:612:-29.5249,0,-197.205	1/1:47:0,47:0:0:47:1675:-151.036,-14.1484,0	1/1:96:0,96:0:0:96:3429:-308.823,-28.8989,0
chr11	29921206	.	A	G	30633.5	PASS	AB=0.475107;ABP=24.3074;AC=49;AF=0.260638;AN=188;AO=1900;CIGAR=1X;DP=7519;DPB=7519;DPRA=1.25015;EPP=4128.81;EPPR=12191.5;GTI=0;LEN=1;MEANALT=1.03279;MQM=59.9832;MQMR=59.9923;NS=94;NUMALT=1;ODDS=0.741379;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67440;QR=200389;RO=5617;RPL=1899;RPP=4120.13;RPPR=12165.5;RPR=1;RUN=1;SAF=1899;SAP=4120.13;SAR=1;SRF=5614;SRP=12174.1;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/0:87:86,1:86:3054:1:32:0,-22.9903,-271.888	0/1:285:122,162:122:4373:162:5775:-434.012,0,-307.889	0/1:233:123,110:123:4416:110:3870:-278.354,0,-327.471	0/1:56:28,28:28:989:28:1000:-73.4577,0,-72.4643	0/1:36:19,17:19:680:17:608:-44.2149,0,-50.6921	0/0:79:79,0:79:2820:0:0:0,-23.7814,-254.04	0/1:124:58,66:58:2076:66:2339:-173.442,0,-149.783	0/1:63:32,31:32:1136:31:1112:-81.4265,0,-83.584	0/0:66:66,0:66:2341:0:0:0,-19.868,-210.948	0/1:52:29,23:29:1040:23:816:-58.1082,0,-78.2608	0/0:99:99,0:99:3548:0:0:0,-29.802,-319.528	0/1:63:37,26:37:1324:26:928:-64.8734,0,-100.497	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.988	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:44:30,14:30:1080:14:500:-32.0909,0,-84.2679	0/1:23:14,9:14:495:9:320:-22.2187,0,-37.9593	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:159:159,0:159:5683:0:0:0,-47.8638,-511.586	0/1:115:64,50:64:2272:50:1769:-124.814,0,-170.063	0/0:152:149,3:149:5304:3:108:0,-35.6814,-467.418	0/1:62:40,22:40:1402:22:774:-51.3164,0,-107.809	0/0:50:46,4:46:1652:4:144:0,-1.73788,-135.655	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/1:219:111,108:111:3950:108:3836:-279.511,0,-289.765	0/1:210:122,88:122:4361:88:3103:-215.724,0,-329.447	0/1:23:15,8:15:540:8:280:-18.6156,0,-42.0128	0/1:219:112,107:112:3971:107:3823:-278.341,0,-291.653	0/1:147:71,76:71:2552:76:2692:-198.275,0,-185.679	0/0:47:46,1:46:1610:1:36:0,-10.5501,-141.587	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:137:137,0:137:4893:0:0:0,-41.2411,-440.521	0/0:114:113,1:113:4037:1:36:0,-30.7191,-359.919	0/1:44:26,18:26:932:18:633:-44.0506,0,-70.9535	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:153:86,67:86:3076:67:2362:-166.779,0,-231.011	0/0:27:27,0:27:956:0:0:0,-8.12781,-86.3557	0/0:149:149,0:149:5294:0:0:0,-44.8535,-476.596	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.702	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:63:63,0:63:2253:0:0:0,-18.9649,-203.031	0/1:134:67,67:67:2400:67:2396:-175.559,0,-175.919	0/0:100:100,0:100:3554:0:0:0,-30.103,-320.067	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:117:54,63:54:1928:63:2247:-167.272,0,-138.576	0/0:115:115,0:115:4101:0:0:0,-34.6184,-369.275	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:114:114,0:114:4065:0:0:0,-34.3174,-366.037	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/1:9:7,2:7:237:2:72:-4.12745,0,-18.9498	0/0:226:225,1:225:7999:1:32:0,-64.8335,-716.541	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:73:49,24:49:1729:24:856:-55.3859,0,-133.918	0/0:90:89,1:89:3188:1:36:0,-23.4944,-283.545	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	0/1:92:48,44:48:1712:44:1572:-114.077,0,-126.671	0/1:99:55,44:55:1972:44:1564:-111.25,0,-147.953	0/1:74:42,32:42:1496:32:1152:-81.7139,0,-112.658	0/1:123:71,52:71:2529:52:1852:-129.932,0,-190.833	0/0:127:125,2:125:4472:2:72:0,-31.3941,-395.813	0/0:151:151,0:151:5413:0:0:0,-45.4555,-487.297	0/1:50:26,24:26:907:24:863:-62.941,0,-66.8929	0/1:43:19,24:19:684:24:848:-63.6954,0,-48.946	0/1:37:21,16:21:756:16:576:-41.0369,0,-57.2291	0/1:20:7,13:7:248:13:464:-36.0769,0,-16.6436	0/0:111:111,0:111:3957:0:0:0,-33.4143,-356.321	0/1:95:64,31:64:2281:31:1093:-70.0798,0,-176.952	0/1:76:34,42:34:1197:42:1499:-112.326,0,-85.1551	0/0:146:146,0:146:5202:0:0:0,-43.9504,-468.318	0/1:75:41,34:41:1438:34:1212:-86.8091,0,-107.135	0/0:95:94,1:94:3372:1:36:0,-24.9996,-300.097	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:79:44,35:44:1584:35:1248:-88.8435,0,-119.07	0/0:117:117,0:117:4151:0:0:0,-35.2205,-373.769	0/1:131:60,71:60:2140:71:2523:-187.885,0,-153.433	0/1:43:24,19:24:860:19:684:-48.946,0,-64.7775	0/1:57:36,21:36:1292:21:748:-50.4866,0,-99.4251	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:103:100,3:100:3576:3:108:0,-20.9309,-311.973	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:62:36,26:36:1292:26:920:-64.4532,0,-97.9199	0/1:51:28,23:28:1008:23:784:-55.52,0,-75.6838	0/1:30:12,18:12:432:18:617:-46.8185,0,-30.1903	0/1:108:51,57:51:1836:57:2004:-148.12,0,-133.009	0/1:67:22,45:22:772:45:1578:-122.141,0,-49.6323	0/0:116:115,1:115:4090:1:36:0,-31.3212,-364.686	0/0:84:83,1:83:2961:1:36:0,-21.6882,-263.124
chr11	29921320	.	A	G	84970.9	PASS	AB=0.527302;ABP=18.899;AC=134;AF=0.72043;AN=186;AO=4011;CIGAR=1X;DP=5186;DPB=5186;DPRA=37.9707;EPP=8634.79;EPPR=2532.78;GTI=5;LEN=1;MEANALT=1.06593;MQM=59.988;MQMR=60;NS=93;NUMALT=1;ODDS=0.250715;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143091;QR=41503;RO=1169;RPL=9;RPP=8634.79;RPPR=2532.78;RPR=4002;RUN=1;SAF=4011;SAP=8712.79;SAR=0;SRF=1169;SRP=2541.46;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49:0:0:49:1729:-155.893,-14.7505,0	1/1:66:0,66:0:0:66:2360:-212.659,-19.868,0	0/1:79:32,47:32:1122:47:1684:-128.066,0,-77.5024	0/1:145:103,42:103:3650:42:1504:-92.0052,0,-285.054	0/1:41:24,17:24:852:17:597:-41.7139,0,-64.6582	0/1:33:19,14:19:665:14:495:-34.949,0,-50.2388	1/1:69:1,68:1:36:68:2425:-214.907,-17.1728,0	0/1:89:50,39:50:1757:39:1404:-99.8676,0,-131.62	0/1:50:19,31:19:676:31:1091:-83.4472,0,-46.1165	1/1:59:0,59:0:0:59:2107:-189.899,-17.7608,0	0/1:35:11,24:11:396:24:847:-66.0127,0,-25.4467	1/1:55:0,55:0:0:55:1955:-176.225,-16.5567,0	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	1/1:35:0,34:0:0:34:1212:-109.027,-10.235,0	1/1:56:0,56:0:0:56:2000:-180.274,-16.8577,0	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	0/1:21:8,13:8:288:13:455:-34.9603,0,-19.9458	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:110:0,110:0:0:110:3888:-350.117,-33.1133,0	0/1:56:28,28:28:1008:28:1000:-73.4577,0,-74.1787	1/1:121:0,121:0:0:121:4316:-388.616,-36.4246,0	0/1:87:33,54:33:1146:54:1924:-147.247,0,-77.2521	1/1:49:1,48:1:36:48:1708:-150.408,-11.1522,0	1/1:93:0,93:0:0:93:3315:-298.569,-27.9958,0	0/1:130:62,68:62:2194:68:2422:-179.102,0,-158.588	0/1:135:47,88:47:1665:88:3160:-243.985,0,-109.496	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:141:73,68:73:2600:68:2421:-175.7,0,-191.801	0/1:102:44,58:44:1561:58:2072:-156.046,0,-110.075	1/1:65:0,64:0:0:64:2279:-205.013,-19.2659,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:115:0,115:0:0:115:4110:-370.085,-34.6185,0	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	0/1:22:10,12:10:348:12:432:-32.5985,0,-25.0325	.:.:.:.:.:.:.:.	0/1:124:56,68:56:1985:68:2426:-181.267,0,-141.595	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	1/1:116:0,116:0:0:116:4164:-374.941,-34.9195,0	1/1:32:0,31:0:0:31:1116:-100.479,-9.33193,0	1/1:31:0,31:0:0:31:1104:-99.6706,-9.33193,0	1/1:99:0,99:0:0:99:3556:-320.247,-29.802,0	0/1:51:19,32:19:676:32:1148:-88.2773,0,-45.8155	1/1:59:0,59:0:0:59:2110:-190.168,-17.7608,0	1/1:55:1,54:1:36:54:1912:-168.759,-12.9584,0	0/1:35:24,11:24:864:11:396:-25.4467,0,-67.5465	1/1:91:1,89:1:36:89:3176:-282.467,-23.8543,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:121:0,121:0:0:121:4296:-386.818,-36.4246,0	1/1:46:0,46:0:0:46:1643:-148.158,-13.8474,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:61:1,60:1:36:60:2132:-188.55,-14.7646,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:44:30,14:30:1038:14:504:-32.4528,0,-80.4798	1/1:68:1,67:1:36:67:2396:-212.299,-16.8718,0	0/1:3:1,2:1:36:2:61:-4.89014,0,-2.69518	0/1:53:12,41:12:428:41:1464:-116.101,0,-22.9042	0/1:93:53,40:53:1881:40:1440:-101.902,0,-141.571	0/1:31:17,14:17:612:14:500:-36.0042,0,-46.0815	0/1:44:20,24:20:720:24:849:-63.4825,0,-51.8835	1/1:122:0,122:0:0:122:4364:-392.935,-36.7257,0	1/1:141:0,141:0:0:141:5045:-454.194,-42.4452,0	0/1:16:3,13:3:108:13:464:-37.2764,0,-5.25869	0/1:33:10,23:10:356:23:815:-63.7374,0,-22.4473	0/1:27:9,17:9:324:17:600:-46.143,0,-21.3192	0/1:9:6,3:6:193:3:108:-7.3659,0,-14.9763	1/1:128:0,127:0:0:127:4548:-409.127,-38.2308,0	0/1:32:13,19:13:449:19:680:-51.8962,0,-31.1045	0/1:79:39,40:39:1396:40:1413:-103.684,0,-102.158	1/1:128:0,128:0:0:128:4565:-411.016,-38.5318,0	0/1:58:24,34:24:856:34:1206:-91.386,0,-59.9014	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:76:46,30:46:1613:30:1080:-74.635,0,-122.576	1/1:50:0,50:0:0:50:1782:-160.662,-15.0515,0	0/1:158:72,86:72:2580:86:3071:-229.056,0,-184.886	0/1:37:10,27:10:360:27:951:-74.7662,0,-21.6062	0/1:18:7,11:7:248:11:388:-29.8388,0,-17.2457	1/1:20:0,20:0:0:20:711:-64.3156,-6.0206,0	1/1:78:1,77:1:36:77:2752:-244.194,-19.8821,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:36:14,22:14:500:22:784:-60.0468,0,-34.4991	0/1:36:22,14:22:788:14:495:-34.046,0,-60.4077	0/1:19:7,12:7:252:12:423:-32.6855,0,-17.3094	0/1:49:19,30:19:684:30:1080:-82.7628,0,-47.1399	0/1:35:21,14:21:756:14:475:-32.5374,0,-57.8312	1/1:42:0,42:0:0:42:1504:-135.618,-12.6433,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0
chr11	29921338	.	C	T	104315	PASS	AB=0.526379;ABP=18.0182;AC=134;AF=0.72043;AN=186;AO=4019;CIGAR=1X;DP=5205;DPB=5205;DPRA=28.5769;EPP=2157.74;EPPR=548.837;GTI=6;LEN=1;MEANALT=1;MQM=59.9836;MQMR=60;NS=93;NUMALT=1;ODDS=0.0970041;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=143518;QR=42174;RO=1186;RPL=1011;RPP=2157.74;RPPR=548.837;RPR=3008;RUN=1;SAF=4019;SAP=8730.16;SAR=0;SRF=1186;SRP=2578.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1768:-159.401,-15.0515,0	1/1:66:0,66:0:0:66:2357:-212.389,-19.868,0	0/1:84:34,50:34:1220:50:1784:-135.556,0,-84.8203	0/1:150:107,43:107:3812:43:1544:-94.0986,0,-298.125	0/1:40:23,17:23:815:17:599:-42.1969,0,-61.6296	0/1:35:20,15:20:703:15:540:-38.4005,0,-53.0575	1/1:69:1,68:1:36:68:2413:-213.825,-17.1728,0	0/1:91:51,40:51:1828:40:1424:-101.064,0,-137.407	0/1:51:20,31:20:712:31:1112:-85.0388,0,-49.0541	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	0/1:37:11,26:11:392:26:936:-73.4214,0,-24.4819	1/1:56:0,56:0:0:56:2004:-180.633,-16.8577,0	0/1:20:8,12:8:288:12:417:-31.8396,0,-20.2468	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:28:0,28:0:0:28:999:-90.2245,-8.42884,0	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:14:7,7:7:248:7:241:-17.8103,0,-18.4498	1/1:19:0,19:0:0:19:679:-61.439,-5.71957,0	1/1:109:0,109:0:0:109:3900:-351.193,-32.8123,0	0/1:57:29,28:29:1014:28:1000:-73.1567,0,-74.4113	1/1:118:0,118:0:0:118:4214:-379.44,-35.5215,0	0/1:86:34,52:34:1216:52:1872:-142.871,0,-83.858	1/1:47:1,46:1:36:46:1652:-145.37,-10.5501,0	1/1:93:0,93:0:0:93:3320:-299.018,-27.9958,0	0/1:129:61,68:61:2188:68:2431:-180.212,0,-158.353	0/1:134:48,86:48:1697:86:3070:-236.19,0,-112.676	0/1:22:10,12:10:352:12:432:-32.5985,0,-25.3955	0/1:142:74,68:74:2634:68:2403:-173.778,0,-194.56	0/1:104:47,57:47:1670:57:2039:-152.474,0,-119.279	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:7:5,2:5:176:2:63:-3.87594,0,-14.0778	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:12:0,12:0:0:12:421:-38.2235,-3.61236,0	1/1:116:0,116:0:0:116:4151:-373.772,-34.9195,0	1/1:79:0,79:0:0:79:2831:-255.028,-23.7814,0	0/1:22:9,13:9:320:13:457:-34.84,0,-22.5197	.:.:.:.:.:.:.:.	0/1:130:60,70:60:2113:70:2510:-187.018,0,-151.304	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	1/1:114:0,114:0:0:114:4076:-367.024,-34.3174,0	1/1:31:0,31:0:0:31:1069:-96.5132,-9.33193,0	1/1:31:0,31:0:0:31:1107:-99.9402,-9.33193,0	1/1:98:0,98:0:0:98:3508:-315.93,-29.5009,0	0/1:52:19,33:19:684:33:1176:-90.4942,0,-46.2368	1/1:59:0,59:0:0:59:2080:-187.467,-17.7608,0	1/1:51:1,50:1:36:50:1772:-156.165,-11.7543,0	0/1:35:25,10:25:900:10:356:-21.8452,0,-70.785	1/1:90:0,90:0:0:90:3217:-289.751,-27.0927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:118:0,118:0:0:118:4231:-380.968,-35.5215,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:63:0,63:0:0:63:2234:-201.323,-18.9649,0	1/1:32:0,32:0:0:32:1139:-102.818,-9.63296,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:46:30,16:30:1076:16:572:-37.966,0,-83.3055	1/1:66:1,65:1:36:65:2336:-206.901,-16.2697,0	0/1:3:1,2:1:36:2:63:-5.08006,0,-2.69518	0/1:51:12,39:12:432:39:1389:-109.955,0,-23.8687	0/1:96:54,42:54:1927:42:1503:-106.665,0,-144.807	0/1:32:18,14:18:640:14:496:-35.3413,0,-48.2964	0/1:44:20,24:20:716:24:864:-64.8372,0,-51.5224	1/1:121:0,121:0:0:121:4328:-389.696,-36.4246,0	1/1:143:0,143:0:0:143:5121:-461.024,-43.0473,0	0/1:16:3,13:3:99:13:457:-36.6458,0,-4.4201	0/1:35:11,24:11:392:24:864:-67.5465,0,-25.084	0/1:28:10,18:10:343:18:648:-50.223,0,-22.7717	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.7768	1/1:127:0,127:0:0:127:4546:-409.306,-38.2308,0	0/1:33:13,20:13:460:20:716:-54.8337,0,-31.8014	0/1:80:38,42:38:1338:42:1496:-110.852,0,-96.6361	1/1:129:0,129:0:0:129:4628:-416.682,-38.8329,0	0/1:61:25,36:25:892:36:1288:-97.8608,0,-62.2369	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	0/1:8:1,7:1:36:7:243:-19.7992,0,-1.19003	0/1:73:43,30:43:1531:30:1080:-75.5381,0,-116.107	1/1:50:0,50:0:0:50:1787:-161.112,-15.0515,0	0/1:154:69,85:69:2459:85:3056:-228.91,0,-175.206	0/1:37:10,27:10:352:27:939:-73.6818,0,-20.8801	0/1:19:7,12:7:248:12:432:-33.5016,0,-16.9446	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:77:1,76:1:36:76:2718:-241.258,-19.581,0	1/1:15:1,14:1:36:14:504:-42.0998,-0.917175,0	0/1:36:15,21:15:532:21:748:-56.8082,0,-37.376	0/1:37:23,14:23:783:14:496:-33.8356,0,-59.6435	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:50:19,31:19:680:31:1096:-83.8965,0,-46.4777	0/1:34:20,14:20:712:14:500:-35.1012,0,-54.1716	1/1:42:0,42:0:0:42:1504:-135.639,-12.6433,0	1/1:56:0,56:0:0:56:1984:-178.832,-16.8577,0
chr11	29921584	.	C	T	171977	PASS	AB=0.491213;ABP=6.90279;AC=138;AF=0.741935;AN=186;AO=8168;CIGAR=1X;DP=11144;DPB=11144;DPRA=30.2717;EPP=17618.2;EPPR=6430.62;GTI=1;LEN=1;MEANALT=1;MQM=59.4898;MQMR=59.9489;NS=93;NUMALT=1;ODDS=0.00882562;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=292684;QR=106377;RO=2976;RPL=8154;RPP=17618.2;RPPR=6430.62;RPR=14;RUN=1;SAF=8168;SAP=17739.6;SAR=0;SRF=2976;SRP=6465.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,59:0:0:59:2104:-189.54,-17.7608,0	1/1:135:0,135:0:0:135:4847:-435.848,-40.6391,0	0/1:196:111,85:111:3969:85:3052:-215.894,0,-298.397	0/1:279:153,126:153:5500:126:4505:-321.584,0,-411.132	0/1:128:68,60:68:2420:60:2141:-154.309,0,-179.517	0/1:84:52,32:52:1868:32:1148:-78.3433,0,-143.113	1/1:183:0,183:0:0:183:6541:-588.564,-55.0885,0	0/1:161:87,74:87:3112:74:2651:-190.324,0,-231.841	0/1:108:60,48:60:2156:48:1728:-123.259,0,-161.796	1/1:130:0,130:0:0:130:4667:-420.016,-39.1339,0	0/1:48:21,27:21:747:27:972:-73.3415,0,-53.1049	1/1:83:0,83:0:0:83:2965:-266.968,-24.9855,0	0/1:66:26,40:26:923:40:1436:-109.652,0,-63.5188	1/1:96:0,96:0:0:96:3448:-310.45,-28.8989,0	1/1:61:0,61:0:0:61:2196:-197.905,-18.3628,0	1/1:51:0,51:0:0:51:1836:-165.455,-15.3525,0	0/1:73:43,30:43:1531:30:1066:-74.1663,0,-116.107	0/1:41:19,22:19:675:22:792:-59.2281,0,-48.7347	1/1:53:0,53:0:0:53:1904:-171.637,-15.9546,0	1/1:221:0,221:0:0:221:7930:-713.658,-66.5276,0	0/1:157:90,67:90:3224:67:2393:-167.948,0,-243.117	1/1:115:0,115:0:0:115:4115:-370.512,-34.6185,0	0/1:141:79,62:79:2836:62:2215:-157.105,0,-213.033	1/1:161:13,148:13:451:148:5301:-436.246,-7.54601,0	1/1:104:0,104:0:0:104:3725:-334.958,-31.3071,0	0/1:383:201,182:201:7196:182:6531:-472.558,0,-532.401	0/1:239:123,116:123:4383:116:4156:-302.237,0,-322.699	0/1:31:11,20:11:392:20:720:-55.7968,0,-26.2866	0/1:386:205,181:205:7332:181:6504:-469.192,0,-543.591	0/1:221:109,112:109:3907:112:4016:-294.946,0,-285.295	1/1:165:1,164:1:36:164:5857:-523.592,-46.0717,0	.:.:.:.:.:.:.:.	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:217:0,217:0:0:217:7757:-698.048,-65.3235,0	1/1:206:0,206:0:0:206:7388:-664.901,-62.0122,0	0/1:86:41,45:41:1459:45:1616:-119.769,0,-105.717	1/1:4:0,4:0:0:4:144:-13.2676,-1.20412,0	0/1:250:144,106:144:5151:106:3812:-267.984,0,-388.473	1/1:37:0,37:0:0:37:1324:-119.457,-11.1381,0	1/1:203:1,202:1:36:202:7211:-645.084,-57.5108,0	1/1:88:0,88:0:0:88:3168:-285.339,-26.4906,0	1/1:79:0,79:0:0:79:2811:-253.104,-23.7814,0	1/1:146:0,146:0:0:146:5235:-471.086,-43.9504,0	0/1:132:73,59:73:2609:59:2105:-149.728,0,-195.32	1/1:125:0,125:0:0:125:4471:-402.54,-37.6288,0	1/1:147:1,146:1:36:146:5204:-464.858,-40.6531,0	0/1:159:82,77:82:2931:77:2768:-201.476,0,-216.148	1/1:193:0,193:0:0:193:6914:-622.32,-58.0988,0	1/1:6:0,6:0:0:6:216:-19.7881,-1.80618,0	1/1:173:0,173:0:0:173:6224:-560.082,-52.0782,0	1/1:84:0,84:0:0:84:3019:-271.919,-25.2865,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:183:0,183:0:0:183:6559:-590.163,-55.0885,0	1/1:76:0,76:0:0:76:2719:-244.734,-22.8783,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:18:0,18:0:0:18:640:-57.9284,-5.41854,0	0/1:122:50,72:50:1796:72:2568:-194.413,0,-125.161	1/1:136:0,136:0:0:136:4865:-437.956,-40.9401,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:232:56,176:56:1996:176:6293:-496.547,0,-110.075	0/1:193:104,89:104:3732:89:3200:-229.98,0,-277.981	0/1:99:41,58:41:1464:58:2088:-158.363,0,-102.12	0/1:115:59,56:59:2112:56:2008:-146.315,0,-155.731	1/1:215:2,213:2:72:213:7626:-678.925,-57.8847,0	1/1:59:0,59:0:0:59:2120:-191.026,-17.7608,0	0/1:29:16,13:16:563:13:468:-33.7298,0,-42.2693	0/1:94:46,48:46:1631:48:1717:-126.414,0,-118.781	0/1:80:33,47:33:1166:47:1684:-127.706,0,-81.1632	0/1:24:14,10:14:496:10:360:-25.5196,0,-37.7495	1/1:222:0,222:0:0:222:7970:-716.85,-66.8287,0	0/1:43:23,20:23:820:20:720:-51.9376,0,-61.1782	0/1:233:127,106:127:4540:106:3796:-271.652,0,-338.605	1/1:226:1,225:1:36:225:8065:-722.231,-64.4345,0	0/1:118:60,58:60:2148:58:2088:-152.63,0,-158.066	1/1:124:0,124:0:0:124:4436:-399.321,-37.3277,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:175:98,77:98:3497:77:2768:-196.265,0,-262.256	1/1:123:0,123:0:0:123:4396:-395.047,-37.0267,0	0/1:276:128,148:128:4569:148:5318:-395.645,0,-328.291	0/1:121:49,72:49:1751:72:2588:-196.541,0,-121.449	0/1:63:20,43:20:720:43:1544:-120.265,0,-46.1639	1/1:93:0,93:0:0:93:3344:-301.096,-27.9958,0	1/1:180:0,180:0:0:180:6454:-580.461,-54.1854,0	1/1:59:0,59:0:0:59:2113:-190.396,-17.7608,0	0/1:70:30,40:30:1052:40:1418:-106.781,0,-73.9156	0/1:67:42,25:42:1508:25:896:-60.7737,0,-115.846	0/1:51:20,31:20:703:31:1110:-84.8539,0,-48.241	0/1:106:57,49:57:2033:49:1737:-124.596,0,-151.331	0/1:85:56,29:56:2012:29:1031:-67.5029,0,-155.759	1/1:192:0,192:0:0:192:6904:-621.389,-57.7978,0	1/1:99:0,99:0:0:99:3540:-318.112,-29.802,0
chr11	29921684	.	T	C	35255.5	PASS	AB=0.471511;ABP=34.9321;AC=50;AF=0.265957;AN=188;AO=2141;CIGAR=1X;DP=8910;DPB=8910;DPRA=1.01833;EPP=4634.78;EPPR=14599.8;GTI=1;LEN=1;MEANALT=1.03571;MQM=59.9799;MQMR=59.9973;NS=94;NUMALT=1;ODDS=4.22009;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76416;QR=242318;RO=6766;RPL=2139;RPP=4634.78;RPPR=14617.1;RPR=2;RUN=1;SAF=0;SAP=4652.13;SAR=2141;SRF=2;SRP=14677.8;SRR=6764;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:111:111,0:111:3977:0:0:0,-33.4143,-358.118	0/1:129:56,73:56:2016:73:2596:-195.054,0,-142.88	0/1:178:94,84:94:3372:84:3020:-218.447,0,-250.112	0/1:75:39,36:39:1404:36:1273:-92.2937,0,-104.082	0/1:52:32,20:32:1133:20:705:-48.1192,0,-86.6231	0/0:135:134,1:134:4824:1:36:0,-37.0408,-430.714	0/1:155:76,79:76:2724:79:2840:-209.178,0,-198.743	0/1:58:19,39:19:680:39:1381:-107.125,0,-44.0694	0/0:75:75,0:75:2685:0:0:0,-22.5772,-241.893	0/1:68:38,30:38:1368:30:1080:-77.0432,0,-102.951	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/1:50:29,21:29:1040:21:756:-53.3157,0,-78.8629	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:65:64,1:64:2304:1:36:0,-15.9687,-204.022	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/1:45:23,22:23:828:22:792:-58.0593,0,-61.2978	0/1:48:30,18:30:1076:18:648:-44.2024,0,-82.7034	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:147:147,0:147:5258:0:0:0,-44.2514,-473.353	0/1:198:102,96:102:3653:96:3425:-248.859,0,-269.368	0/0:79:79,0:79:2829:0:0:0,-23.7814,-254.847	0/1:119:66,53:66:2376:53:1877:-133.384,0,-178.275	0/1:116:105,11:105:3753:11:392:-0.700578,0,-303.049	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/1:261:144,117:144:5138:117:4163:-296.281,0,-383.991	0/1:165:90,75:90:3236:75:2700:-193.573,0,-241.791	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:296:147,149:147:5273:149:5337:-391.356,0,-385.598	0/1:134:67,67:67:2382:67:2370:-173.217,0,-174.296	0/0:103:102,0:102:3600:0:0:0,-30.7051,-323.843	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:8:1,7:1:36:7:237:-19.2508,0,-1.19003	0/1:4:1,3:1:36:3:104:-8.42657,0,-2.39415	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:224:223,1:223:7971:1:36:0,-63.8324,-713.81	0/0:220:220,0:220:7874:0:0:0,-66.2266,-708.683	0/1:78:39,39:39:1404:39:1395:-102.368,0,-103.179	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:101:66,35:66:2372:35:1260:-83.3015,0,-183.334	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:112:112,0:112:3998:0:0:0,-33.7154,-360.007	0/0:93:93,0:93:3314:0:0:0,-27.9958,-298.476	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.831	0/0:78:78,0:78:2774:0:0:0,-23.4803,-249.898	0/1:157:88,68:88:3164:68:2420:-170.884,0,-237.811	0/0:169:169,0:169:6065:0:0:0,-50.8741,-545.949	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.231	0/1:139:68,71:68:2444:71:2537:-186.736,0,-178.371	0/0:188:188,0:188:6745:0:0:0,-56.5936,-607.12	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:134:134,0:134:4812:0:0:0,-40.338,-433.234	0/0:62:62,0:62:2232:0:0:0,-18.6639,-201.144	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/0:155:155,0:155:5530:0:0:0,-46.6596,-497.824	0/0:138:138,0:138:4945:0:0:0,-41.5421,-445.197	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:66:33,33:33:1184:33:1184:-87.0003,0,-87.0003	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.565	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:147:104,42:104:3736:42:1493:-90.4988,0,-292.278	0/1:198:79,119:79:2840:119:4238:-321.994,0,-196.234	0/1:59:33,26:33:1180:26:917:-65.0838,0,-88.7473	0/1:96:48,48:48:1713:48:1690:-123.482,0,-125.555	0/0:182:182,0:182:6492:0:0:0,-54.7875,-584.36	0/0:150:149,1:149:5337:1:36:0,-41.5562,-476.863	0/1:30:14,16:14:504:16:572:-42.7825,0,-36.6672	0/1:107:61,46:61:2184:46:1652:-116.758,0,-164.616	0/1:54:31,23:31:1101:23:828:-58.5885,0,-83.1427	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:80:80,0:80:2865:0:0:0,-24.0824,-258.085	0/1:82:53,29:53:1889:29:1044:-69.5903,0,-145.602	0/1:138:73,65:73:2628:65:2321:-167.606,0,-195.224	0/0:205:205,0:205:7360:0:0:0,-61.7111,-662.445	0/1:94:47,47:47:1673:47:1692:-124.27,0,-122.558	0/0:119:118,1:118:4187:1:36:0,-32.2243,-373.411	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:87:47,40:47:1692:40:1440:-103.708,0,-126.377	0/0:115:115,0:115:4136:0:0:0,-34.6184,-372.422	0/1:199:99,100:99:3522:100:3549:-259.713,0,-257.283	0/1:94:45,49:45:1616:49:1764:-130.747,0,-117.433	0/1:30:14,16:14:504:16:572:-42.7825,0,-36.6672	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:159:159,0:159:5690:0:0:0,-47.8638,-512.215	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:68:30,38:30:1080:38:1360:-102.231,0,-77.0432	0/1:57:25,32:25:896:32:1118:-83.7648,0,-63.8016	0/1:27:17,10:17:612:10:360:-24.6165,0,-47.2856	0/1:110:56,54:56:2008:54:1905:-138.61,0,-147.878	0/1:75:24,51:24:864:51:1825:-141.953,0,-55.5053	0/0:126:125,1:125:4461:1:36:0,-34.3315,-398.061	0/0:100:100,0:100:3577:0:0:0,-30.103,-322.136
chr11	29921956	.	G	A	50177.1	PASS	AB=0.457817;ABP=29.2076;AC=136;AF=0.723404;AN=188;AO=2452;CIGAR=1X;DP=3389;DPB=3389;DPRA=14.713;EPP=5327.46;EPPR=2037.68;GTI=2;LEN=1;MEANALT=1;MQM=59.9992;MQMR=59.9424;NS=94;NUMALT=1;ODDS=0.208335;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87022;QR=33371;RO=937;RPL=0;RPP=5327.46;RPPR=2037.68;RPR=2452;RUN=1;SAF=0;SAP=5327.46;SAR=2452;SRF=0;SRP=2037.68;SRR=937;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:16:0,16:0:0:16:564:-51.0903,-4.81648,0	1/1:29:0,29:0:0:29:998:-90.1257,-8.72987,0	0/1:46:29,17:29:1040:17:612:-41.5661,0,-79.1278	0/1:73:36,37:36:1288:37:1332:-98.2072,0,-94.2484	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:22:12,10:12:428:10:348:-25.0325,0,-32.2361	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	0/1:41:30,11:30:1059:11:396:-23.6405,0,-83.2782	0/1:39:28,11:28:984:11:396:-24.2426,0,-77.1305	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	0/1:31:17,14:17:612:14:499:-35.9137,0,-46.0815	1/1:27:0,27:0:0:27:951:-85.9043,-8.12781,0	0/1:26:13,13:13:464:13:460:-33.9086,0,-34.2569	1/1:50:0,50:0:0:50:1783:-160.752,-15.0515,0	1/1:29:0,29:0:0:29:1031:-93.1026,-8.72987,0	1/1:18:0,18:0:0:18:622:-56.302,-5.41854,0	0/1:29:12,17:12:424:17:604:-45.9607,0,-29.7665	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	1/1:10:0,10:0:0:10:352:-32.0182,-3.0103,0	1/1:59:0,59:0:0:59:2114:-190.529,-17.7608,0	0/1:50:36,14:36:1292:14:491:-29.4696,0,-101.532	1/1:31:0,31:0:0:31:1068:-96.4247,-9.33193,0	0/1:42:22,20:22:792:20:716:-52.1245,0,-58.9624	1/1:43:2,41:2:72:41:1472:-125.939,-6.10757,0	1/1:36:0,36:0:0:36:1268:-114.42,-10.8371,0	0/1:99:51,48:51:1823:48:1724:-125.643,0,-134.548	0/1:73:44,29:44:1576:29:1029:-70.9468,0,-120.156	0/1:9:1,8:1:36:8:279:-22.7383,0,-0.883903	0/1:95:43,52:43:1532:52:1856:-138.722,0,-109.575	0/1:40:22,18:22:792:18:640:-45.8881,0,-59.5645	1/1:53:0,53:0:0:53:1872:-168.756,-15.9546,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:10:6,4:6:207:4:144:-10.3033,0,-15.9566	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:78:0,78:0:0:78:2778:-250.26,-23.4803,0	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	0/1:25:11,14:11:396:14:492:-37.0866,0,-28.457	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:29:15,14:15:531:14:490:-35.7009,0,-39.392	1/1:20:0,20:0:0:20:703:-63.5935,-6.0206,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:36:0,36:0:0:36:1242:-112.077,-10.8371,0	1/1:22:0,22:0:0:22:775:-70.0712,-6.62266,0	1/1:60:0,60:0:0:60:2147:-193.497,-18.0618,0	0/1:22:16,6:16:572:6:212:-12.8021,0,-45.1908	1/1:54:0,54:0:0:54:1904:-171.635,-16.2556,0	1/1:49:1,48:1:36:48:1709:-150.496,-11.1522,0	0/1:40:26,14:26:921:14:500:-33.295,0,-71.164	1/1:95:0,95:0:0:95:3389:-305.224,-28.5979,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:37:1,36:1:36:36:1288:-112.625,-7.53984,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:5:1,4:1:36:4:135:-10.9774,0,-2.09312	1/1:58:0,58:0:0:58:2064:-186.031,-17.4597,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:23:10,13:10:345:13:468:-35.536,0,-24.4571	1/1:64:0,64:0:0:64:2268:-204.382,-19.2659,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:51:30,21:30:1063:21:737:-51.2981,0,-80.6283	0/1:73:42,31:42:1482:31:1104:-77.6954,0,-111.695	0/1:28:17,11:17:612:11:388:-26.8285,0,-46.9846	0/1:32:19,13:19:684:13:464:-32.4645,0,-52.2574	1/1:90:4,86:4:144:86:3059:-262.226,-13.7791,0	1/1:58:3,55:3:108:55:1964:-166.96,-7.38457,0	0/1:9:3,6:3:108:6:207:-16.2576,0,-7.3659	0/1:46:25,21:25:884:21:743:-53.346,0,-66.031	0/1:29:16,13:16:568:13:456:-32.6434,0,-42.722	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	1/1:46:0,46:0:0:46:1629:-146.897,-13.8474,0	0/1:22:13,9:13:464:9:320:-22.5197,0,-35.4748	0/1:72:36,36:36:1257:36:1288:-94.5494,0,-91.7558	1/1:35:0,35:0:0:35:1237:-111.633,-10.5361,0	0/1:46:26,20:26:936:20:712:-50.5593,0,-70.7121	1/1:35:0,35:0:0:35:1232:-111.181,-10.5361,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:44:19,25:19:672:25:881:-66.3605,0,-47.5615	1/1:49:0,49:0:0:49:1735:-156.434,-14.7505,0	0/1:68:27,41:27:950:41:1429:-108.431,0,-65.3434	0/1:46:31,15:31:1108:15:536:-34.7274,0,-86.1836	0/1:15:6,9:6:212:9:320:-24.6269,0,-14.9093	1/1:17:0,17:0:0:17:580:-52.5204,-5.11751,0	1/1:51:1,50:1:36:50:1758:-154.904,-11.7543,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:41:20,21:20:712:21:747:-55.2121,0,-52.0644	0/1:29:14,15:14:500:15:540:-40.2067,0,-36.6063	0/1:15:6,9:6:216:9:312:-23.8999,0,-15.2751	0/1:63:36,27:36:1277:27:968:-68.4725,0,-96.2662	0/1:30:22,8:22:788:8:288:-17.2365,0,-62.2139	1/1:36:1,35:1:36:35:1244:-108.666,-7.23881,0	1/1:26:0,26:0:0:26:919:-83.0262,-7.82678,0
chr11	29921986	.	T	C	15570.6	PASS	AB=0.548773;ABP=37.5368;AC=51;AF=0.271277;AN=188;AO=936;CIGAR=1X;DP=3347;DPB=3347;DPRA=1.07523;EPP=2018.17;EPPR=5167;GTI=0;LEN=1;MEANALT=1.01786;MQM=59.9573;MQMR=59.9905;NS=94;NUMALT=1;ODDS=0.760897;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33361;QR=85534;RO=2410;RPL=934;RPP=2018.17;RPPR=5167;RPR=2;RUN=1;SAF=0;SAP=2035.51;SAR=936;SRF=0;SRP=5236.26;SRR=2410;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:560:0:0:0,-4.81648,-50.7287	0/0:27:27,0:27:949:0:0:0,-8.12781,-85.7228	0/1:48:19,29:19:665:29:1024:-77.7925,0,-45.7233	0/1:75:39,36:39:1373:36:1273:-92.2947,0,-101.289	0/1:17:8,9:8:284:9:315:-23.5697,0,-20.7858	0/1:21:9,12:9:316:12:432:-32.8996,0,-22.4572	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:41:11,30:11:392:30:1072:-84.4502,0,-23.2778	0/1:39:12,27:12:428:27:972:-76.0577,0,-27.1186	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7675	0/1:31:14,17:14:496:17:612:-46.0815,0,-35.6423	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:24:12,12:12:424:12:422:-31.0896,0,-31.2717	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6254	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:28:16,12:16:576:12:427:-30.3393,0,-43.7461	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/0:59:59,0:59:2097:0:0:0,-17.7608,-188.998	0/1:51:14,37:14:500:37:1332:-104.83,0,-29.9836	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:40:17,23:17:589:23:814:-61.5393,0,-41.2921	0/0:41:39,2:39:1381:2:72:0,-5.50551,-117.75	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/1:100:50,50:50:1780:50:1788:-131.1,0,-130.38	0/1:72:28,44:28:996:44:1584:-121.177,0,-68.2807	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:95:51,44:51:1812:44:1576:-113.534,0,-134.693	0/1:37:15,22:15:536:22:777:-59.1123,0,-37.4367	0/0:54:53,1:53:1877:1:36:0,-12.6584,-165.61	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:78:78,0:78:2764:0:0:0,-23.4803,-249.001	0/0:77:77,0:77:2729:0:0:0,-23.1793,-245.853	0/1:25:14,11:14:500:11:396:-28.457,0,-37.8104	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:28:13,15:13:456:15:540:-40.5077,0,-32.9444	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.173	0/0:22:22,0:22:772:0:0:0,-6.62266,-69.8013	0/0:59:59,0:59:2089:0:0:0,-17.7608,-188.278	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	0/0:53:53,0:53:1869:0:0:0,-15.9546,-168.487	0/0:51:50,1:50:1780:1:36:0,-11.7543,-156.885	0/1:38:13,25:13:464:25:896:-69.5212,0,-30.6584	0/0:94:94,0:94:3334:0:0:0,-28.2968,-300.276	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:35:35,0:35:1222:0:0:0,-10.536,-110.28	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:58:58,0:58:2046:0:0:0,-17.4597,-184.408	0/0:25:25,0:25:872:0:0:0,-7.52575,-78.7936	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:25:14,11:14:492:11:387:-27.6402,0,-37.0866	0/0:66:66,0:66:2341:0:0:0,-19.868,-210.948	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:50:20,30:20:701:30:1061:-80.7489,0,-48.3602	0/1:71:30,41:30:1076:41:1436:-108.159,0,-75.7797	0/1:28:11,17:11:388:17:599:-45.8093,0,-26.8285	0/1:34:13,21:13:464:21:743:-56.9583,0,-31.8625	0/0:84:79,5:79:2782:5:180:0,-8.73445,-234.068	0/0:59:56,3:56:1932:3:108:0,-7.6856,-164.074	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:46:21,25:21:752:25:896:-67.113,0,-54.1589	0/1:30:14,16:14:485:16:576:-43.1441,0,-34.9461	0/1:11:5,6:5:180:6:206:-15.5639,0,-13.2407	0/0:45:45,0:45:1608:0:0:0,-13.5463,-145.01	0/1:20:8,11:8:280:11:396:-29.9034,0,-19.461	0/1:70:34,36:34:1220:36:1280:-94.4311,0,-89.0347	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/1:44:18,26:18:640:26:931:-70.8633,0,-44.684	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:45:25,20:25:884:20:720:-51.5824,0,-66.332	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:68:40,28:40:1424:28:987:-68.6724,0,-107.987	0/1:48:17,31:17:608:31:1104:-85.2212,0,-40.6026	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:54:53,1:53:1900:1:36:0,-12.6573,-167.68	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:42:22,20:22:792:20:709:-51.4915,0,-58.9624	0/1:27:14,13:14:500:13:464:-33.9697,0,-37.2084	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/1:62:27,35:27:949:35:1246:-93.7802,0,-67.0589	0/1:31:9,22:9:320:22:780:-61.1911,0,-19.8104	0/0:33:32,1:32:1136:1:36:0,-6.33571,-98.9506	0/0:26:26,0:26:924:0:0:0,-7.82678,-83.4777
chr11	29941777	.	T	C	52245.9	PASS	AB=0.478454;ABP=9.37335;AC=139;AF=0.739362;AN=188;AO=2422;CIGAR=1X;DP=3251;DPB=3251;DPRA=34.9462;EPP=4663.7;EPPR=1639.74;GTI=2;LEN=1;MEANALT=1.01075;MQM=55.1879;MQMR=59.8321;NS=94;NUMALT=1;ODDS=0.42532;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85356;QR=29564;RO=828;RPL=71;RPP=4663.7;RPPR=1631.47;RPR=2351;RUN=1;SAF=2422;SAP=5262.32;SAR=0;SRF=827;SRP=1792.31;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:929:-83.8548,-8.12781,0	1/1:31:0,31:0:0:31:1103:-99.3428,-9.33193,0	0/1:31:12,19:12:428:19:676:-51.701,0,-29.5269	0/1:62:32,30:32:1128:30:1051:-76.0896,0,-83.1617	0/1:20:8,12:8:288:12:424:-32.4322,0,-20.2468	0/1:13:8,5:8:288:5:176:-12.2634,0,-22.354	1/1:32:1,31:1:36:31:1096:-95.2763,-6.03469,0	0/1:87:56,31:56:1989:31:1099:-72.9311,0,-153.09	0/1:27:16,11:16:564:11:392:-27.4651,0,-42.9591	1/1:22:0,22:0:0:22:780:-70.3682,-6.62266,0	0/1:29:12,17:12:423:17:595:-45.0177,0,-29.6631	1/1:54:0,54:0:0:54:1902:-171.225,-16.2556,0	0/1:29:13,16:13:468:16:559:-41.7336,0,-33.7298	1/1:24:0,24:0:0:24:856:-77.2653,-7.22472,0	1/1:22:0,22:0:0:22:772:-69.5875,-6.62266,0	1/1:31:0,31:0:0:31:1095:-98.6534,-9.33193,0	0/1:19:12,7:12:424:7:248:-16.8139,0,-32.7768	0/1:13:8,5:8:288:5:171:-11.8014,0,-22.354	1/1:17:0,17:0:0:17:603:-54.4637,-5.11751,0	1/1:40:0,40:0:0:40:1406:-126.686,-12.0412,0	0/1:36:19,17:19:680:17:612:-44.4774,0,-50.6921	1/1:48:0,48:0:0:48:1682:-151.428,-14.4494,0	0/1:27:14,13:14:491:13:464:-33.8501,0,-36.391	1/1:31:1,30:1:36:30:1045:-89.7325,-5.73366,0	1/1:32:0,32:0:0:32:1139:-102.694,-9.63296,0	0/1:83:44,39:44:1580:39:1392:-100.352,0,-117.505	0/1:84:45,39:45:1620:39:1389:-99.7284,0,-120.803	0/1:10:4,6:4:144:6:212:-16.3905,0,-10.3033	0/1:103:40,63:40:1428:63:2231:-169.704,0,-97.8114	0/1:43:24,19:24:864:19:684:-48.8759,0,-65.1383	1/1:26:2,24:2:72:24:851:-70.0094,-1.00859,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:9:0,9:0:0:9:316:-28.755,-2.70927,0	0/1:5:1,4:1:36:4:140:-11.4025,0,-2.09312	0/1:2:1,1:1:36:1:36:-2.99251,0,-2.99621	1/1:10:0,10:0:0:10:360:-32.7106,-3.0103,0	1/1:106:0,106:0:0:106:3707:-333.608,-31.9092,0	1/1:62:0,62:0:0:62:2194:-197.306,-18.6639,0	0/1:25:10,15:10:356:15:524:-39.9132,0,-24.8463	1/1:1:0,1:0:0:1:36:-3.59457,-0.30103,0	0/1:28:7,21:7:248:21:748:-59.1328,0,-14.2354	1/1:18:0,18:0:0:18:618:-55.8258,-5.41854,0	1/1:53:0,53:0:0:53:1880:-168.845,-15.9546,0	1/1:18:0,18:0:0:18:635:-57.3416,-5.41854,0	1/1:17:0,17:0:0:17:600:-54.2744,-5.11751,0	1/1:73:0,73:0:0:73:2598:-233.885,-21.9752,0	0/1:32:16,16:16:568:16:547:-39.8659,0,-41.8189	1/1:103:0,103:0:0:103:3651:-328.389,-31.0061,0	1/1:54:0,54:0:0:54:1876:-168.764,-16.2556,0	0/1:27:16,11:16:576:11:392:-27.4606,0,-44.0472	1/1:72:0,72:0:0:72:2552:-229.235,-21.6742,0	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	1/1:37:0,37:0:0:37:1311:-118.12,-11.1381,0	1/1:22:0,22:0:0:22:779:-70.4096,-6.62266,0	0/1:6:2,4:2:72:4:144:-11.4937,0,-5.03054	1/1:31:0,31:0:0:31:1107:-99.8153,-9.33193,0	1/1:17:0,17:0:0:17:600:-54.292,-5.11751,0	0/1:8:3,5:3:108:5:180:-14.1377,0,-7.66693	1/1:4:0,4:0:0:4:136:-12.5729,-1.20412,0	0/1:53:34,19:34:1193:19:663:-43.959,0,-91.7186	1/1:57:0,57:0:0:57:2022:-181.947,-17.1587,0	0/1:6:1,5:1:36:5:180:-14.7316,0,-1.79209	0/1:48:29,19:29:1040:19:658:-45.0119,0,-79.4649	0/1:78:50,28:50:1781:28:988:-65.5484,0,-136.9	0/1:39:21,18:21:752:18:638:-45.8535,0,-56.2089	0/1:29:19,10:19:680:10:347:-22.8075,0,-52.7993	1/1:35:0,35:0:0:35:1223:-110.229,-10.5361,0	1/1:86:0,86:0:0:86:3003:-269.705,-25.8886,0	0/1:17:6,11:6:216:11:375:-28.9256,0,-14.673	0/1:21:11,10:11:396:10:351:-25.5776,0,-29.6611	0/1:15:6,9:6:216:9:315:-24.1629,0,-15.2751	1/1:6:0,6:0:0:6:216:-19.7786,-1.80618,0	1/1:51:0,51:0:0:51:1807:-162.031,-15.3525,0	0/1:21:11,10:11:396:10:351:-25.5714,0,-29.6611	0/1:58:24,34:24:864:34:1196:-90.3709,0,-60.6228	1/1:49:0,49:0:0:49:1756:-158.035,-14.7505,0	0/1:51:32,19:32:1148:19:664:-44.6834,0,-87.4987	1/1:31:0,31:0:0:31:1084:-97.6809,-9.33193,0	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:17:8,9:8:284:9:315:-23.5345,0,-20.7858	1/1:46:0,46:0:0:46:1628:-146.347,-13.8474,0	0/1:54:23,31:23:824:31:1104:-83.1485,0,-58.2277	0/1:26:9,17:9:324:17:600:-46.3622,0,-21.6791	0/1:21:13,8:13:456:8:275:-18.7455,0,-35.0516	1/1:15:0,15:0:0:15:519:-47.0012,-4.51545,0	1/1:47:1,46:1:36:46:1586:-138.584,-10.5501,0	1/1:11:0,11:0:0:11:392:-35.4803,-3.31133,0	0/1:31:13,18:13:468:18:627:-47.3789,0,-33.1277	0/1:38:20,18:20:712:18:627:-45.2737,0,-52.9675	0/1:14:9,5:9:324:5:176:-11.8224,0,-25.2914	0/1:54:38,15:38:1355:15:528:-31.3878,0,-105.974	0/1:35:20,15:20:716:15:510:-35.6403,0,-54.2245	1/1:51:0,51:0:0:51:1787:-160.763,-15.3525,0	1/1:41:0,41:0:0:41:1440:-129.689,-12.3422,0
chr11	29941807	.	ACCAA	GCCGA,GCCAA	61738.8	PASS	AB=0.46996,0.508678;ABP=14.7519,3.99022;AC=138,50;AF=0.734043,0.265957;AN=188;AO=2252,768;CIGAR=1X2M1X1M,1X4M;DP=3098;DPB=3104.8;DPRA=33.6522,0.904991;EPP=4893.17,1670.7;EPPR=0;GTI=2;LEN=5,1;MEANALT=2.13043,2.57692;MQM=54.9378,59.9128;MQMR=0;NS=94;NUMALT=2;ODDS=0.821262;PAIRED=0,0;PAIREDR=0;PAO=8.5,8.5;PQA=290.75,290.75;PQR=0;PRO=0;QA=77801,26987;QR=0;RO=0;RPL=2252,768;RPP=4893.17,1670.7;RPPR=0;RPR=0,0;RUN=1,1;SAF=2252,768;SAP=4893.17,1670.7;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24,0:0:0:24,0:809,0:-73.0199,-7.22472,0,-73.0199,-7.22472,-73.0199	1/1:34:0,34,0:0:0:34,0:1176,0:-105.864,-10.235,0,-105.864,-10.235,-105.864	1/2:28:0,16,10:0:0:16,10:565,343:-73.8344,-27.879,-23.0625,-45.9886,0,-42.9783	1/2:56:0,27,28:0:0:27,28:924,991:-155.494,-80.6402,-72.5124,-74.7688,0,-66.34	1/2:19:0,11,8:0:0:11,8:395,288:-56.0332,-23.8592,-20.5478,-32.5333,0,-30.1251	1/2:11:0,3,7:0:0:3,7:107,252:-29.3558,-20.6405,-19.7374,-8.77788,0,-6.67067	1/1:27:0,26,0:0:0:26,0:887,0:-79.7878,-7.82678,0,-79.7878,-7.82678,-79.7878	1/2:85:0,31,53:0:0:31,53:1058,1851:-236.321,-150.55,-141.218,-85.7563,0,-69.8017	1/2:25:0,8,16:0:0:8,16:284,568:-69.4403,-46.3229,-43.9147,-23.1564,0,-18.3399	1/1:22:0,20,0:0:0:20,0:696,0:-62.5509,-6.0206,0,-62.5509,-6.0206,-62.5509	1/2:28:0,17,10:0:0:17,10:562,356:-74.3971,-29.021,-23.9035,-45.3732,0,-42.3629	1/1:50:0,50,0:0:0:50,0:1745,0:-157.114,-15.0515,0,-157.114,-15.0515,-157.114	1/2:26:0,15,10:0:0:15,10:499,351:-68.8907,-28.5845,-24.0691,-40.3179,0,-37.3076	1/1:22:0,22,0:0:0:22,0:756,0:-68.2813,-6.62266,0,-68.2813,-6.62266,-68.2813	1/1:23:0,23,0:0:0:23,0:799,0:-72.0307,-6.92369,0,-72.0307,-6.92369,-72.0307	1/1:30:0,30,0:0:0:30,0:1041,0:-93.8594,-9.0309,0,-93.8594,-9.0309,-93.8594	1/2:18:0,7,11:0:0:7,11:225,380:-49.2589,-31.1752,-29.068,-18.3728,0,-15.0615	1/2:13:0,5,8:0:0:5,8:167,280:-36.6315,-23.1311,-21.6259,-13.8403,0,-11.4321	1/1:18:0,18,0:0:0:18,0:621,0:-56.0786,-5.41854,0,-56.0786,-5.41854,-56.0786	1/1:41:0,39,0:0:0:39,0:1338,0:-120.298,-11.7402,0,-120.298,-11.7402,-120.298	1/2:38:0,18,20:0:0:18,20:620,716:-109.037,-58.7471,-53.3286,-50.6407,0,-44.6201	1/1:45:0,43,0:0:0:43,0:1469,0:-132.07,-12.9443,0,-132.07,-12.9443,-132.07	1/2:28:0,14,14:0:0:14,14:492,496:-80.5494,-40.7111,-36.4967,-40.1456,0,-35.9312	1/1:29:0,28,1:0:0:28,1:936,36:-83.903,-8.42884,0,-80.9647,-5.1316,-80.6637	1/1:31:0,31,0:0:0:31,0:1085,0:-97.8448,-9.33193,0,-97.8448,-9.33193,-97.8448	1/2:81:0,38,42:0:0:38,42:1307,1456:-224.35,-118.376,-106.937,-106.007,0,-93.364	1/2:83:0,38,43:0:0:38,43:1323,1521:-231.194,-124.001,-112.562,-107.304,0,-94.36	1/2:10:0,6,4:0:0:6,4:197,140:-27.63,-11.7405,-9.93428,-16.2307,0,-15.0265	1/2:96:0,59,34:0:0:59,34:2040,1196:-262.897,-97.4258,-79.665,-165.536,0,-155.301	1/2:39:0,17,22:0:0:17,22:599,777:-112.281,-63.58,-58.4625,-49.0069,0,-42.3842	1/1:26:0,24,1:0:0:24,1:845,32:-76.0174,-7.22472,0,-73.4472,-4.60389,-73.1462	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:6:0,6,0:0:0:6,0:212,0:-19.4019,-1.80618,0,-19.4019,-1.80618,-19.4019	1/2:4:0,3,1:0:0:3,1:93,32:-10.34,-2.89828,-1.99519,-7.759,0,-7.45797	1/2:3:0,2,1:0:0:2,1:65,36:-8.51666,-3.29724,-2.69518,-5.56753,0,-5.2665	1/1:11:0,11,0:0:0:11,0:389,0:-35.3151,-3.31133,0,-35.3151,-3.31133,-35.3151	1/1:100:0,93,0:0:0:93,0:3215,0:-289.164,-27.9958,0,-289.164,-27.9958,-289.164	1/1:58:0,57,0:0:0:57,0:1978,0:-177.621,-17.1587,0,-177.621,-17.1587,-177.621	1/2:23:0,14,9:0:0:14,9:475,292:-62.3749,-23.8858,-19.6714,-38.8191,0,-36.1099	1/1:1:0,1,0:0:0:1,0:36,0:-3.59457,-0.30103,0,-3.59457,-0.30103,-3.59457	1/2:25:0,20,5:0:0:20,5:712,180:-72.946,-15.0069,-8.98635,-58.2585,0,-56.7534	1/1:17:0,17,0:0:0:17,0:574,0:-51.81,-5.11751,0,-51.81,-5.11751,-51.81	1/1:53:0,53,0:0:0:53,0:1860,0:-167.084,-15.9546,0,-167.084,-15.9546,-167.084	1/1:17:0,15,0:0:0:15,0:516,0:-46.3223,-4.51545,0,-46.3223,-4.51545,-46.3223	1/1:17:0,17,0:0:0:17,0:595,0:-53.83,-5.11751,0,-53.83,-5.11751,-53.83	1/1:75:0,70,0:0:0:70,0:2435,0:-218.956,-21.0721,0,-218.956,-21.0721,-218.956	1/2:32:0,15,16:0:0:15,16:512,576:-88.4807,-47.0834,-42.5679,-41.4699,0,-36.6535	1/1:99:0,97,0:0:0:97,0:3362,0:-302.222,-29.1999,0,-302.222,-29.1999,-302.222	1/1:47:0,43,0:0:0:43,0:1507,0:-135.234,-12.9443,0,-135.234,-12.9443,-135.234	1/2:26:0,10,15:0:0:10,15:337,532:-70.6658,-43.3851,-40.3748,-27.311,0,-22.7955	1/1:75:0,69,0:0:0:69,0:2387,0:-214.537,-20.7711,0,-214.537,-20.7711,-214.537	1/1:2:0,2,0:0:0:2,0:71,0:-6.73335,-0.60206,0,-6.73335,-0.60206,-6.73335	1/1:36:0,36,0:0:0:36,0:1244,0:-112.156,-10.8371,0,-112.156,-10.8371,-112.156	1/1:23:0,23,0:0:0:23,0:795,0:-71.8468,-6.92369,0,-71.8468,-6.92369,-71.8468	1/2:7:0,5,2:0:0:5,2:178,72:-20.724,-6.23466,-4.72951,-14.8479,0,-14.2458	1/1:30:0,30,0:0:0:30,0:1048,0:-94.4726,-9.0309,0,-94.4726,-9.0309,-94.4726	1/1:15:0,15,0:0:0:15,0:529,0:-47.9092,-4.51545,0,-47.9092,-4.51545,-47.9092	1/2:8:0,5,3:0:0:5,3:178,108:-23.6717,-9.17208,-7.66693,-14.8579,0,-13.9548	1/1:4:0,4,0:0:0:4,0:136,0:-12.57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chr11	30172280	.	A	T	49049.9	PASS	AB=0.496323;ABP=3.69699;AC=50;AF=0.265957;AN=188;AO=2921;CIGAR=1X;DP=11465;DPB=11465;DPRA=1.1217;EPP=6345.88;EPPR=18506.1;GTI=1;LEN=1;MEANALT=1.06667;MQM=59.9688;MQMR=59.9645;NS=94;NUMALT=1;ODDS=5.1215;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104491;QR=305103;RO=8537;RPL=2921;RPP=6345.88;RPPR=18506.1;RPR=0;RUN=1;SAF=0;SAP=6345.88;SAR=2921;SRF=0;SRP=18540.9;SRR=8537;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:78:78,0:78:2770:0:0:0,-23.4803,-249.539	0/0:151:151,0:151:5387:0:0:0,-45.4555,-484.857	0/1:143:48,95:48:1720:95:3400:-263.164,0,-112.038	0/1:333:165,168:165:5904:168:6004:-440.223,0,-431.227	0/1:48:28,20:28:995:20:690:-47.9674,0,-75.4146	0/1:50:25,25:25:896:25:900:-66.2695,0,-65.9089	0/0:227:227,0:227:8083:0:0:0,-68.3338,-727.491	0/1:173:79,94:79:2817:94:3360:-250.536,0,-201.69	0/1:120:47,73:47:1671:73:2593:-197.494,0,-114.553	0/0:140:140,0:140:4997:0:0:0,-42.1442,-449.875	0/1:78:37,41:37:1332:41:1476:-109.656,0,-96.702	0/0:91:91,0:91:3255:0:0:0,-27.3937,-293.17	0/1:75:39,36:39:1378:36:1296:-94.3667,0,-101.74	0/0:86:86,0:86:3069:0:0:0,-25.8886,-276.437	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.749	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:81:38,43:38:1368:43:1536:-114.15,0,-99.0374	0/1:27:13,14:13:468:14:500:-37.2084,0,-34.3318	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:196:196,0:196:6990:0:0:0,-59.0019,-628.535	0/1:187:89,98:89:3180:98:3497:-258.647,0,-230.132	0/0:162:162,0:162:5773:0:0:0,-48.7669,-519.686	0/1:112:54,58:54:1932:58:2061:-152.046,0,-140.405	0/0:134:130,4:130:4664:4:144:0,-27.0244,-406.607	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.795	0/1:360:226,133:226:8081:133:4773:-321.293,0,-618.875	0/1:267:120,147:120:4308:147:5276:-394.599,0,-307.52	0/1:35:14,21:14:504:21:752:-57.4702,0,-35.162	0/1:253:157,96:157:5620:96:3448:-234.371,0,-429.761	0/1:246:113,133:113:4025:133:4739:-352.425,0,-288.385	0/0:218:217,1:217:7751:1:36:0,-62.0263,-693.147	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:242:242,0:242:8644:0:0:0,-72.8493,-777.954	0/0:208:207,1:207:7415:1:36:0,-59.016,-663.727	0/1:90:48,42:48:1712:42:1512:-109.282,0,-127.273	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:228:100,128:100:3560:128:4564:-342.29,0,-251.975	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:136:136,0:136:4888:0:0:0,-40.9401,-440.07	0/0:82:82,0:82:2928:0:0:0,-24.6845,-263.755	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.84	0/0:241:241,0:241:8644:0:0:0,-72.5482,-777.952	0/1:169:90,79:90:3228:79:2838:-204.784,0,-239.867	0/0:202:202,0:202:7212:0:0:0,-60.8081,-649.137	0/0:184:184,0:184:6568:0:0:0,-55.3895,-591.201	0/1:128:60,68:60:2160:68:2436:-180.963,0,-156.135	0/0:225:225,0:225:8026:0:0:0,-67.7317,-722.363	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:129:127,0:127:4541:0:0:0,-38.2308,-408.496	0/0:70:69,1:69:2472:1:36:0,-17.4738,-219.135	0/1:14:4,10:4:144:10:360:-28.5299,0,-9.0992	0/0:207:207,0:207:7387:0:0:0,-62.3132,-664.877	0/0:41:41,0:41:1456:0:0:0,-12.3422,-131.336	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:90:51,39:51:1828:39:1396:-98.8464,0,-137.708	0/0:153:152,1:152:5452:1:36:0,-42.4593,-487.209	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:255:138,117:138:4920:117:4140:-295.99,0,-366.188	0/1:254:138,116:138:4915:116:4140:-296.323,0,-366.042	0/1:103:51,52:51:1832:52:1868:-137.393,0,-134.153	0/1:102:49,53:49:1764:53:1900:-140.573,0,-128.339	0/0:237:235,1:235:8419:1:36:0,-67.8046,-754.114	0/0:166:164,2:164:5853:2:72:0,-43.1343,-519.939	0/1:51:31,20:31:1108:20:716:-49.4152,0,-84.6785	0/1:122:72,50:72:2584:50:1800:-125.557,0,-196.083	0/1:80:37,41:37:1324:41:1468:-108.576,0,-95.622	0/1:18:14,4:14:491:4:140:-7.52604,0,-39.1026	0/0:188:188,0:188:6672:0:0:0,-56.5936,-600.559	0/1:105:58,47:58:2076:47:1674:-119.314,0,-155.502	0/1:268:140,128:140:5032:128:4588:-332.386,0,-372.348	0/0:189:187,2:187:6696:2:72:0,-50.0579,-595.879	0/1:108:47,61:47:1688:61:2188:-164.674,0,-119.696	0/0:140:140,0:140:4996:0:0:0,-42.1442,-449.786	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/1:136:61,75:61:2154:75:2696:-201.944,0,-153.184	0/0:103:102,1:102:3652:1:36:0,-27.4078,-325.286	0/1:252:128,123:128:4580:123:4395:-319.804,0,-336.308	0/1:110:58,52:58:2067:52:1868:-135.286,0,-153.187	0/1:71:43,28:43:1532:28:996:-68.5818,0,-116.8	0/0:97:97,0:97:3472:0:0:0,-29.1999,-312.69	0/0:145:143,2:143:5099:2:72:0,-36.8126,-452.218	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:90:50,40:50:1791:40:1440:-102.805,0,-134.379	0/1:98:43,55:43:1540:55:1964:-147.534,0,-109.392	0/1:59:33,26:33:1179:26:936:-66.7987,0,-88.6565	0/1:120:58,62:58:2070:62:2220:-163.94,0,-150.446	0/1:76:21,55:21:744:55:1967:-154.426,0,-44.406	0/0:145:144,1:144:5136:1:36:0,-40.0511,-458.697	0/0:106:106,0:106:3799:0:0:0,-31.9092,-342.107
chr11	30224160	.	C	A	26228.9	PASS	AB=0.612917;ABP=268.802;AC=52;AF=0.276596;AN=188;AO=1490;CIGAR=1X;DP=4380;DPB=4380;DPRA=1.2539;EPP=3238.5;EPPR=6259.03;GTI=3;LEN=1;MEANALT=1;MQM=59.2624;MQMR=59.9955;NS=94;NUMALT=1;ODDS=1.49318;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53355;QR=103219;RO=2889;RPL=1490;RPP=3238.5;RPPR=6259.03;RPR=0;RUN=1;SAF=0;SAP=3238.5;SAR=1490;SRF=0;SRP=6276.39;SRR=2889;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:84:38,46:38:1353:46:1643:-122.38,0,-96.7819	0/1:111:46,65:46:1628:65:2332:-176.704,0,-113.392	0/1:37:13,24:13:464:24:864:-66.9383,0,-30.9594	0/1:26:8,18:8:288:18:643:-50.3108,0,-18.4406	0/0:107:107,0:107:3801:0:0:0,-32.2102,-342.289	0/1:127:47,80:47:1684:80:2864:-219.709,0,-113.616	0/1:33:12,21:12:432:21:756:-58.4262,0,-29.2872	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:12:7,5:7:248:5:180:-12.9155,0,-19.0401	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:18:8,10:8:288:10:360:-27.2805,0,-20.8489	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:17:10,7:10:360:7:252:-17.8408,0,-27.6268	0/1:29:14,15:14:504:15:536:-39.7989,0,-36.9682	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:72:72,0:72:2553:0:0:0,-21.6742,-230.02	0/1:57:23,34:23:809:34:1224:-93.3079,0,-55.9696	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/1:22:11,11:11:392:11:396:-29.3601,0,-28.9974	0/0:55:50,5:50:1800:5:180:0,-0.00458458,-145.73	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:193:76,117:76:2720:117:4178:-317.879,0,-186.945	0/1:90:35,55:35:1252:55:1976:-150.975,0,-85.8924	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:150:75,75:75:2664:75:2696:-197.673,0,-194.85	0/1:101:46,55:46:1648:55:1959:-146.171,0,-118.205	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:13:6,7:6:208:7:252:-19.1156,0,-15.1457	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:7:3,4:3:108:4:140:-10.8348,0,-7.96796	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:92:90,2:90:3209:2:72:0,-20.858,-282.195	0/1:20:8,12:8:284:12:422:-32.2399,0,-19.8828	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:85:31,54:31:1116:54:1929:-148.24,0,-75.1641	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:90:89,1:89:3169:1:36:0,-23.4944,-281.836	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.663	0/1:60:22,38:22:792:38:1368:-105.355,0,-53.5439	0/0:91:91,0:91:3192:0:0:0,-27.3937,-287.501	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:68:31,37:31:1071:37:1328:-99.2977,0,-76.2217	0/0:100:99,1:99:3544:1:36:0,-26.5047,-315.571	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.721	0/1:12:7,5:7:248:5:176:-12.5664,0,-19.0518	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:4:1,3:1:36:3:96:-7.75396,0,-2.39415	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:71:18,53:18:648:53:1886:-148.614,0,-37.2788	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:75:33,42:33:1173:42:1512:-113.797,0,-83.2983	0/1:138:49,89:49:1764:89:3183:-244.42,0,-117.502	0/1:41:10,31:10:360:31:1116:-88.3731,0,-20.4021	0/1:47:12,35:12:428:35:1256:-99.0865,0,-24.7104	0/0:84:83,0:83:2968:0:0:0,-24.9855,-267.141	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:38:13,25:13:468:25:896:-69.4735,0,-31.0205	0/1:39:7,32:7:248:32:1148:-91.8335,0,-10.924	0/1:19:8,11:8:288:11:396:-30.2614,0,-20.5478	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:15:5,10:5:176:10:357:-27.9314,0,-11.6696	0/1:103:29,74:29:1032:74:2652:-207.63,0,-62.1874	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:84:35,49:35:1248:49:1744:-131.789,0,-87.3383	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	1/1:6:0,6:0:0:6:216:-19.7887,-1.80618,0	0/1:61:24,37:24:864:37:1328:-101.345,0,-59.7197	0/0:72:71,1:71:2548:1:32:0,-18.4748,-226.371	0/1:142:49,93:49:1749:93:3344:-258.096,0,-114.946	0/1:31:10,21:10:356:21:744:-57.9137,0,-23.0493	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:25:24,1:24:830:1:36:0,-3.92747,-71.4141	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:18:12,6:12:432:6:207:-13.5465,0,-33.8027	0/1:17:3,14:3:108:14:504:-40.5695,0,-4.95766	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:23:6,17:6:216:17:612:-48.4447,0,-12.8668	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617
chr11	30224173	.	G	C	26027.4	PASS	AB=0.609867;ABP=255.899;AC=53;AF=0.281915;AN=188;AO=1485;CIGAR=1X;DP=4391;DPB=4391;DPRA=1.02557;EPP=3227.65;EPPR=6308.97;GTI=3;LEN=1;MEANALT=1.01887;MQM=59.2815;MQMR=59.9917;NS=94;NUMALT=1;ODDS=1.26058;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52981;QR=103857;RO=2904;RPL=1485;RPP=3227.65;RPPR=6308.97;RPR=0;RUN=1;SAF=0;SAP=3227.65;SAR=1485;SRF=0;SRP=6308.97;SRR=2904;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/1:87:40,47:40:1436:47:1639:-121.122,0,-103.348	0/1:111:46,65:46:1656:65:2309:-174.636,0,-115.914	0/1:37:13,24:13:468:24:849:-65.5835,0,-31.3215	0/1:25:8,17:8:284:17:604:-47.117,0,-18.3776	0/0:111:111,0:111:3969:0:0:0,-33.4143,-357.382	0/1:129:48,81:48:1720:81:2904:-222.655,0,-116.253	0/1:33:12,21:12:432:21:741:-57.0706,0,-29.2872	0/0:46:46,0:46:1633:0:0:0,-13.8474,-147.257	0/1:12:7,5:7:252:5:172:-12.1861,0,-19.3878	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:17:7,10:7:252:10:360:-27.5815,0,-17.9114	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:17:17,0:17:603:0:0:0,-5.11751,-54.5995	0/1:17:10,7:10:356:7:252:-17.8408,0,-27.2637	0/1:29:14,15:14:504:15:536:-39.7995,0,-36.9682	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:58:22,36:22:788:36:1281:-98.1311,0,-53.7851	0/0:91:91,0:91:3241:0:0:0,-27.3937,-291.911	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/0:57:52,5:52:1864:5:180:0,-0.606645,-151.487	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:195:78,117:78:2787:117:4189:-318.25,0,-192.369	0/1:90:35,55:35:1243:55:1964:-149.869,0,-85.0812	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:153:76,77:76:2728:77:2753:-201.882,0,-199.705	0/1:101:45,55:45:1605:55:1961:-146.443,0,-114.422	0/0:63:63,0:63:2238:0:0:0,-18.9649,-201.68	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:3,4:3:108:4:144:-11.2001,0,-7.96796	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:92:92,0:92:3292:0:0:0,-27.6948,-296.499	0/1:20:7,13:7:252:13:464:-35.9607,0,-17.0084	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:84:31,53:31:1104:53:1889:-144.943,0,-74.3841	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:59:22,37:22:776:37:1332:-102.421,0,-52.4014	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.747	0/0:81:80,0:80:2845:0:0:0,-24.0824,-256.076	0/1:71:31,40:31:1101:40:1417:-106.43,0,-78.0252	0/0:99:99,0:99:3529:0:0:0,-29.802,-317.819	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:12:7,5:7:252:5:180:-12.8074,0,-19.4166	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:71:19,52:19:684:52:1872:-147.362,0,-40.5172	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:75:33,42:33:1184:42:1497:-112.445,0,-84.2911	0/1:138:49,89:49:1752:89:3188:-244.858,0,-116.422	0/1:42:11,31:11:372:31:1108:-87.3514,0,-21.1606	0/1:46:12,34:12:432:34:1179:-92.5571,0,-25.3738	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/0:73:73,0:73:2612:0:0:0,-21.9752,-235.328	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:37:12,25:12:432:25:896:-69.7745,0,-28.0831	0/1:39:7,32:7:252:32:1140:-91.0577,0,-11.2888	0/1:20:8,12:8:288:12:432:-33.1988,0,-20.2468	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.526	0/1:14:5,9:5:180:9:324:-25.2443,0,-12.3376	0/1:104:32,72:32:1144:72:2579:-200.824,0,-71.9624	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.29	0/1:83:35,48:35:1252:48:1709:-128.973,0,-87.9996	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	1/1:6:0,6:0:0:6:212:-19.4235,-1.80618,0	0/1:59:23,36:23:824:36:1296:-99.1134,0,-56.7225	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:142:50,92:50:1796:92:3269:-251.351,0,-119.176	0/1:31:10,21:10:360:21:752:-58.6214,0,-23.4124	0/1:11:6,5:6:216:5:176:-12.8737,0,-16.4792	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:26:25,1:25:879:1:36:0,-4.2285,-75.8285	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:18:12,6:12:432:6:216:-14.3701,0,-33.8027	0/1:16:3,13:3:108:13:464:-37.2709,0,-5.25869	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:24:7,17:7:248:17:612:-48.1436,0,-15.4395	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057
chr11	30224179	.	G	T	26056.7	PASS	AB=0.610903;ABP=259.727;AC=53;AF=0.281915;AN=188;AO=1481;CIGAR=1X;DP=4391;DPB=4391;DPRA=1.01609;EPP=3218.96;EPPR=6319.82;GTI=3;LEN=1;MEANALT=1;MQM=59.2613;MQMR=59.9955;NS=94;NUMALT=1;ODDS=1.8484;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52937;QR=104058;RO=2909;RPL=1481;RPP=3218.96;RPPR=6319.82;RPR=0;RUN=1;SAF=0;SAP=3218.96;SAR=1481;SRF=0;SRP=6319.82;SRR=2909;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:61:61,0:61:2165:0:0:0,-18.3628,-195.115	0/1:86:39,47:39:1396:47:1684:-125.467,0,-100.051	0/1:109:45,64:45:1605:64:2292:-173.71,0,-111.926	0/1:37:13,24:13:468:24:856:-66.2168,0,-31.3215	0/1:24:8,16:8:284:16:572:-44.5674,0,-18.6786	0/0:108:108,0:108:3864:0:0:0,-32.5112,-347.956	0/1:128:46,82:46:1652:82:2924:-224.758,0,-110.437	0/1:32:11,21:11:392:21:756:-58.7273,0,-25.9871	0/0:45:45,0:45:1604:0:0:0,-13.5463,-144.65	0/1:12:7,5:7:252:5:180:-12.9155,0,-19.3878	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:18:8,10:8:288:10:360:-27.2805,0,-20.8489	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:18:18,0:18:628:0:0:0,-5.41854,-56.8455	0/1:17:10,7:10:356:7:252:-17.8408,0,-27.2637	0/1:29:15,14:15:536:14:504:-36.9222,0,-39.8449	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:73:73,0:73:2601:0:0:0,-21.9752,-234.337	0/1:59:23,36:23:820:36:1292:-98.8226,0,-56.3617	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/0:57:52,5:52:1864:5:180:0,-0.606645,-151.487	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:193:78,115:78:2785:115:4110:-311.76,0,-192.79	0/1:89:35,54:35:1252:54:1917:-145.966,0,-86.1934	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:153:77,76:77:2772:76:2698:-196.971,0,-203.663	0/1:101:46,55:46:1648:55:1946:-144.981,0,-118.205	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:3,4:3:108:4:144:-11.2001,0,-7.96796	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/1:21:8,13:8:284:13:468:-36.0218,0,-19.5817	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:84:31,53:31:1116:53:1896:-145.575,0,-75.4652	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:91:91,0:91:3272:0:0:0,-27.3937,-294.699	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:60:22,38:22:792:38:1364:-104.995,0,-53.5439	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.902	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/1:68:29,39:29:1040:39:1404:-106.169,0,-73.4443	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.985	0/0:52:51,0:51:1824:0:0:0,-15.3525,-164.081	0/1:13:7,6:7:248:6:216:-15.739,0,-18.7508	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:71:18,53:18:640:53:1878:-147.869,0,-36.5562	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	0/1:74:33,41:33:1188:41:1476:-110.86,0,-84.9524	0/1:136:49,87:49:1752:87:3120:-239.349,0,-117.024	0/1:43:11,32:11:381:32:1152:-91.0095,0,-21.6763	0/1:46:12,34:12:417:34:1224:-96.5126,0,-24.0128	0/0:83:83,0:83:2968:0:0:0,-24.9855,-267.353	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:36:12,24:12:432:24:864:-67.1978,0,-28.3841	0/1:40:7,33:7:237:33:1184:-94.6648,0,-9.61786	0/1:19:7,12:7:252:12:432:-33.4998,0,-17.3094	0/0:81:81,0:81:2884:0:0:0,-24.3834,-259.798	0/1:15:5,10:5:180:10:345:-26.8183,0,-12.0366	0/1:104:30,74:30:1076:74:2621:-204.68,0,-65.8457	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:82:35,47:35:1252:47:1662:-125.059,0,-88.3006	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	1/1:5:0,5:0:0:5:180:-16.5502,-1.50515,0	0/1:60:24,36:24:849:36:1288:-98.0471,0,-58.666	0/0:71:71,0:71:2537:0:0:0,-21.3731,-228.579	0/1:144:50,94:50:1796:94:3368:-259.654,0,-118.574	0/1:30:10,20:10:356:20:720:-56.0449,0,-23.3503	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:26:25,1:25:892:1:36:0,-4.2285,-77.0014	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:18:12,6:12:432:6:216:-14.3701,0,-33.8027	0/1:17:3,14:3:108:14:504:-40.5695,0,-4.95766	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441
chr11	30256791	.	A	C	99189.5	PASS	AB=0.445509;ABP=102.641;AC=136;AF=0.731183;AN=186;AO=5102;CIGAR=1X;DP=7255;DPB=7255;DPRA=78.8478;EPP=11081.9;EPPR=4671.68;GTI=2;LEN=1;MEANALT=1.03261;MQM=40.598;MQMR=59.6619;NS=93;NUMALT=1;ODDS=1.32463;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182681;QR=77078;RO=2150;RPL=0;RPP=11081.9;RPPR=4671.68;RPR=5102;RUN=1;SAF=5102;SAP=11081.9;SAR=0;SRF=2150;SRP=4671.68;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:672:-57.4931,-5.71957,0	1/1:89:0,89:0:0:89:3180:-268.064,-26.7917,0	0/1:124:59,65:59:2105:65:2332:-160.006,0,-152.373	0/1:215:112,103:112:4012:103:3684:-256.154,0,-296.527	0/1:36:20,16:20:716:16:576:-37.3002,0,-53.9214	0/1:36:23,13:23:812:13:460:-28.6195,0,-62.4756	1/1:54:0,54:0:0:54:1928:-167.911,-16.2556,0	0/1:90:49,41:49:1752:41:1472:-98.0239,0,-130.833	0/1:63:45,18:45:1612:18:640:-34.9864,0,-126.405	1/1:94:0,94:0:0:94:3360:-292.134,-28.2968,0	0/1:38:19,19:19:684:19:680:-48.4522,0,-50.4512	1/1:53:0,53:0:0:53:1900:-157.438,-15.9546,0	0/1:51:30,21:30:1076:21:756:-48.2619,0,-81.8003	1/1:38:0,38:0:0:38:1360:-116.811,-11.4391,0	1/1:74:0,74:0:0:74:2645:-230.615,-22.2762,0	1/1:37:0,37:0:0:37:1316:-114.231,-11.1381,0	0/1:68:23,45:23:828:45:1601:-114.265,0,-54.1672	0/1:40:28,12:28:1004:12:428:-24.6249,0,-78.5047	1/1:33:0,33:0:0:33:1184:-98.9652,-9.93399,0	1/1:226:0,226:0:0:226:8069:-701.734,-68.0328,0	0/1:143:70,73:70:2516:73:2616:-182.313,0,-182.842	1/1:58:0,58:0:0:58:2080:-182.458,-17.4597,0	0/1:37:24,13:24:864:13:453:-27.8283,0,-66.9421	1/1:109:4,105:4:144:105:3768:-310.44,-19.4987,0	1/1:37:0,37:0:0:37:1328:-113.656,-11.1381,0	0/1:256:144,112:144:5168:112:4008:-274.344,0,-388.166	0/1:133:58,75:58:2076:75:2684:-190.707,0,-147.069	0/1:29:17,12:17:612:12:428:-28.6349,0,-46.6789	0/1:311:168,142:168:6020:142:5092:-354.135,0,-448.229	0/1:129:82,47:82:2940:47:1665:-104.821,0,-225.99	1/1:61:0,61:0:0:61:2184:-190.784,-18.3628,0	0/1:4:2,2:2:72:2:72:-5.35941,0,-5.63098	0/1:9:6,3:6:212:3:108:-6.9633,0,-16.7155	.:.:.:.:.:.:.:.	0/1:5:1,4:1:36:4:144:-10.2622,0,-2.09312	1/1:5:0,5:0:0:5:180:-15.583,-1.50515,0	1/1:167:0,167:0:0:167:5980:-528.69,-50.272,0	1/1:72:0,72:0:0:72:2588:-221.978,-21.6742,0	0/1:69:39,30:39:1404:30:1072:-68.2719,0,-105.817	1/1:1:0,1:0:0:1:36:-3.45449,-0.30103,0	0/1:156:83,72:83:2980:72:2553:-173.075,0,-221.417	1/1:35:0,35:0:0:35:1260:-109.186,-10.5361,0	1/1:57:0,57:0:0:57:2044:-176.403,-17.1587,0	1/1:48:0,48:0:0:48:1716:-149.686,-14.4494,0	1/1:49:0,49:0:0:49:1764:-153.169,-14.7505,0	1/1:73:0,73:0:0:73:2624:-231.445,-21.9752,0	0/1:69:41,28:41:1468:28:1004:-64.7619,0,-111.644	1/1:146:0,146:0:0:146:5209:-452.632,-43.9504,0	1/1:84:1,83:1:36:83:2980:-257.28,-21.6882,0	0/1:124:65,59:65:2332:59:2104:-146.603,0,-172.809	1/1:86:0,86:0:0:86:3088:-271.736,-25.8886,0	1/1:5:0,5:0:0:5:180:-16.0065,-1.50515,0	1/1:115:0,115:0:0:115:4124:-344.504,-34.6185,0	1/1:15:0,15:0:0:15:540:-47.6546,-4.51545,0	0/1:14:11,3:11:392:3:108:-5.27086,0,-31.3836	1/1:109:0,109:0:0:109:3912:-333.796,-32.8123,0	1/1:43:0,43:0:0:43:1544:-135.053,-12.9443,0	0/1:5:4,1:4:144:1:36:-2.03097,0,-11.8085	1/1:12:0,12:0:0:12:432:-38.5437,-3.61236,0	0/1:39:23,16:23:824:16:576:-38.3737,0,-62.6939	1/1:79:4,75:4:140:75:2688:-223.56,-11.6361,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:272:161,111:161:5772:111:3976:-267.954,0,-437.631	0/1:162:96,66:96:3456:66:2368:-157.417,0,-262.479	0/1:79:50,29:50:1773:29:1044:-65.2076,0,-136.065	0/1:50:27,23:27:968:23:820:-57.162,0,-72.384	1/1:136:0,136:0:0:136:4861:-424.56,-40.9401,0	1/1:105:0,105:0:0:105:3768:-329.149,-31.6082,0	0/1:27:15,12:15:536:12:432:-29.5261,0,-40.4424	0/1:64:31,33:31:1112:33:1180:-80.6284,0,-81.1254	0/1:61:36,25:36:1292:25:896:-60.8015,0,-98.2209	0/1:19:10,9:10:356:9:324:-23.0026,0,-26.6617	1/1:98:0,97:0:0:97:3480:-289.933,-29.1999,0	0/1:55:30,25:30:1076:25:881:-57.8246,0,-80.5939	0/1:79:37,42:37:1328:42:1512:-105.759,0,-96.0393	1/1:170:0,170:0:0:170:6112:-534.992,-51.1751,0	0/1:30:16,14:16:568:14:496:-33.4748,0,-42.3334	1/1:102:0,102:0:0:102:3644:-306.537,-30.7051,0	0/1:8:2,6:2:72:6:216:-16.2236,0,-4.42848	0/1:109:75,34:75:2696:34:1216:-72.6657,0,-210.062	1/1:122:0,122:0:0:122:4376:-365.199,-36.7257,0	0/1:199:105,94:105:3772:94:3360:-231.965,0,-279.379	0/1:75:45,30:45:1604:30:1072:-71.1823,0,-122.061	0/1:41:19,22:19:680:22:792:-56.2325,0,-49.1823	1/1:71:0,71:0:0:71:2540:-218.657,-21.3731,0	1/1:119:0,119:0:0:119:4264:-371.13,-35.8226,0	1/1:30:0,30:0:0:30:1076:-91.5466,-9.0309,0	0/1:49:31,18:31:1112:18:640:-39.2009,0,-85.6409	0/1:41:26,15:26:936:15:540:-32.9776,0,-72.2009	0/1:22:10,12:10:360:12:432:-31.0313,0,-26.1216	0/1:55:31,24:31:1116:24:860:-57.1513,0,-84.1935	0/1:73:41,32:41:1476:32:1152:-78.684,0,-111.149	1/1:179:0,179:0:0:179:6412:-555.32,-53.8844,0	1/1:76:0,76:0:0:76:2724:-237.191,-22.8783,0
chr11	30256849	.	T	A	238622	PASS	AB=0.465326;ABP=92.3093;AC=136;AF=0.723404;AN=188;AO=11126;CIGAR=1X;DP=15712;DPB=15712;DPRA=84.4624;EPP=24162.8;EPPR=9781.91;GTI=4;LEN=1;MEANALT=1.03226;MQM=33.4907;MQMR=59.638;NS=94;NUMALT=1;ODDS=0.233986;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=391321;QR=163526;RO=4583;RPL=5117;RPP=158.301;RPPR=41.4955;RPR=6009;RUN=1;SAF=5117;SAP=158.301;SAR=6009;SRF=2131;SRP=51.8322;SRR=2452;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:996:-79.0693,-8.42884,0	1/1:252:0,252:0:0:252:8873:-640.078,-75.8596,0	0/1:263:139,124:139:4967:124:4343:-247.38,0,-367.959	0/1:437:235,202:235:8393:202:7152:-429.317,0,-622.154	0/1:69:38,31:38:1341:31:1091:-61.1926,0,-100.204	0/1:61:34,27:34:1212:27:948:-53.5914,0,-91.0156	1/1:209:0,209:0:0:209:7301:-539.521,-62.9153,0	0/1:254:143,111:143:5116:111:3931:-208.203,0,-383.205	0/1:144:92,52:92:3278:52:1822:-88.6963,0,-251.888	1/1:243:3,240:3:108:240:8487:-636.937,-63.0751,0	0/1:73:28,45:28:1000:45:1603:-100.874,0,-68.3378	1/1:102:0,102:0:0:102:3564:-265.731,-30.7051,0	0/1:132:72,60:72:2588:60:2122:-112.503,0,-193.415	1/1:87:0,87:0:0:87:3072:-224.535,-26.1896,0	1/1:137:0,137:0:0:137:4793:-377.711,-41.2411,0	1/1:81:0,81:0:0:81:2835:-212.463,-24.3834,0	0/1:124:57,67:57:2040:67:2360:-148.644,0,-146.322	0/1:84:56,28:56:1999:28:991:-47.2703,0,-154.861	1/1:73:0,73:0:0:73:2579:-191.24,-21.9752,0	1/1:448:0,448:0:0:448:15816:-1235.7,-134.861,0	0/1:298:159,139:159:5662:139:4857:-283.065,0,-419.825	1/1:110:0,110:0:0:110:3902:-314.782,-33.1133,0	0/1:111:78,33:78:2804:33:1140:-52.7688,0,-219.151	0/1:148:14,133:14:504:133:4687:-337.977,0,-1.18388	1/1:58:0,58:0:0:58:2042:-159.245,-17.4597,0	0/1:511:271,240:271:9656:240:8463:-517.42,0,-715.136	0/1:249:111,138:111:3979:138:4800:-292.393,0,-283.343	0/1:74:41,33:41:1454:33:1149:-63.3774,0,-108.865	0/1:606:320,286:320:11452:286:10046:-617.834,0,-847.873	0/1:232:131,101:131:4696:101:3562:-194.229,0,-352.851	1/1:159:0,159:0:0:159:5575:-423.87,-47.8638,0	0/1:5:3,2:3:108:2:68:-4.75595,0,-8.56842	0/1:13:8,5:8:273:5:180:-11.0916,0,-20.9868	0/1:5:3,2:3:108:2:72:-3.35639,0,-8.57002	0/1:7:3,4:3:104:4:140:-9.39668,0,-7.5956	1/1:6:0,6:0:0:6:216:-17.872,-1.80618,0	1/1:350:0,350:0:0:350:12365:-992.169,-105.361,0	1/1:180:0,180:0:0:180:6385:-467.563,-54.1854,0	0/1:136:70,66:70:2476:66:2347:-130.635,0,-182.055	1/1:3:0,3:0:0:3:108:-7.16438,-0.90309,0	0/1:374:195,179:195:6992:179:6277:-349.649,0,-516.606	1/1:56:1,55:1:36:55:1920:-145.564,-13.4701,0	1/1:117:0,117:0:0:117:4097:-310.892,-35.2205,0	1/1:129:0,129:0:0:129:4508:-344.371,-38.8329,0	1/1:112:0,112:0:0:112:3948:-304.437,-33.7154,0	1/1:148:0,148:0:0:148:5206:-418.246,-44.5524,0	0/1:153:84,69:84:2991:69:2451:-131.157,0,-223.288	1/1:266:0,266:0:0:266:9334:-737.786,-80.074,0	1/1:194:1,193:1:36:193:6818:-520.663,-54.8015,0	0/1:252:108,144:108:3849:144:5086:-314.576,0,-270.739	1/1:247:0,247:0:0:247:8696:-675.169,-74.3544,0	1/1:6:0,6:0:0:6:212:-18.1956,-1.80618,0	1/1:317:0,317:0:0:317:11094:-795.98,-95.4265,0	1/1:54:0,54:0:0:54:1900:-144.654,-16.2556,0	0/1:18:13,5:13:468:5:176:-9.13976,0,-37.0191	1/1:249:0,249:0:0:249:8769:-648.779,-74.9565,0	1/1:71:0,71:0:0:71:2525:-203.014,-21.3731,0	0/1:11:9,2:9:324:2:68:-2.69633,0,-26.1945	1/1:20:0,20:0:0:20:708:-59.8041,-6.0206,0	0/1:128:71,57:71:2544:57:2014:-104.404,0,-190.263	1/1:180:3,177:3:108:177:6224:-469.801,-44.9148,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:608:336,272:336:11980:272:9534:-565.035,0,-894.967	0/1:311:170,141:170:6078:141:4983:-293.378,0,-453.477	0/1:154:87,67:87:3076:67:2360:-127.809,0,-230.705	0/1:116:69,47:69:2441:47:1663:-94.5389,0,-185.017	1/1:293:0,293:0:0:293:10330:-799.671,-88.2018,0	1/1:190:0,190:0:0:190:6684:-527.883,-57.1957,0	0/1:45:19,26:19:676:26:909:-53.4462,0,-47.6198	0/1:133:68,65:68:2412:65:2268:-130.19,0,-177.289	0/1:139:68,71:68:2431:71:2498:-152.125,0,-177.196	0/1:26:12,14:12:432:14:500:-32.8688,0,-31.3898	1/1:191:0,191:0:0:191:6687:-502.553,-57.4967,0	0/1:157:78,79:78:2760:79:2808:-151.607,0,-201.342	0/1:225:117,108:117:4165:108:3784:-210.198,0,-307.283	1/1:380:0,380:0:0:380:13338:-1032.75,-114.391,0	0/1:84:62,22:62:2207:22:771:-34.9108,0,-172.14	1/1:269:1,268:1:36:268:9440:-680.111,-77.3788,0	0/1:11:3,8:3:104:8:280:-19.5945,0,-6.39148	0/1:273:175,98:175:6230:98:3444:-168.275,0,-478.573	1/1:204:0,204:0:0:204:7205:-552.06,-61.4101,0	0/1:491:272,219:272:9710:219:7694:-443.739,0,-726.009	0/1:177:95,81:95:3399:81:2832:-161.712,0,-252.855	0/1:89:49,40:49:1735:40:1418:-84.4262,0,-129.638	1/1:155:1,153:1:36:153:5339:-405.088,-43.1154,0	1/1:224:0,224:0:0:224:7792:-615.037,-67.4307,0	1/1:66:0,66:0:0:66:2337:-172.917,-19.868,0	0/1:108:60,48:60:2135:48:1712:-90.9962,0,-159.905	0/1:103:61,42:61:2167:42:1441:-73.3609,0,-164.256	0/1:51:26,25:26:936:25:866:-49.8755,0,-69.0074	0/1:127:61,66:61:2175:66:2321:-130.059,0,-157.779	0/1:151:96,55:96:3431:55:1931:-107.026,0,-263.527	1/1:332:0,332:0:0:332:11676:-915.87,-99.942,0	1/1:163:1,162:1:36:162:5662:-433.296,-45.4696,0
chr11	30371203	.	A	G	45690.2	PASS	AB=0.493865;ABP=4.82208;AC=51;AF=0.271277;AN=188;AO=2764;CIGAR=1X;DP=10466;DPB=10466;DPRA=1.11601;EPP=5996.28;EPPR=16695.1;GTI=2;LEN=1;MEANALT=1.06557;MQM=59.8824;MQMR=59.9493;NS=94;NUMALT=1;ODDS=1.01486;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98334;QR=275930;RO=7695;RPL=2763;RPP=5996.28;RPPR=16695.1;RPR=1;RUN=1;SAF=2764;SAP=6004.96;SAR=0;SRF=7695;SRP=16712.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:174:174,0:174:6236:0:0:0,-52.3792,-561.335	0/1:102:41,61:41:1472:61:2170:-164.859,0,-102.071	0/1:145:92,53:92:3308:53:1884:-126.189,0,-254.288	0/1:86:33,53:33:1184:53:1904:-145.749,0,-80.9797	0/1:82:37,45:37:1324:45:1603:-119.875,0,-94.7758	0/0:141:141,0:141:5060:0:0:0,-42.4452,-455.515	0/1:253:124,129:124:4422:129:4548:-333.311,0,-321.979	0/1:68:27,41:27:968:41:1457:-110.954,0,-66.9673	0/0:161:161,0:161:5771:0:0:0,-48.4658,-519.475	0/1:85:35,50:35:1252:50:1779:-134.733,0,-87.3975	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/1:94:50,44:50:1800:44:1564:-112.698,0,-133.984	0/0:163:163,0:163:5864:0:0:0,-49.0679,-526.679	0/0:80:79,1:79:2840:1:36:0,-20.4841,-252.239	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:145:70,75:70:2520:75:2660:-195.678,0,-183.402	0/1:71:35,36:35:1256:36:1288:-94.8495,0,-91.9722	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:160:159,1:159:5720:1:36:0,-44.5665,-511.315	0/1:132:71,61:71:2540:61:2149:-153.938,0,-189.106	0/0:157:157,0:157:5635:0:0:0,-47.2617,-507.24	0/1:34:13,20:13:468:20:720:-54.835,0,-32.1658	0/0:149:141,8:141:5064:8:284:0,-18.9501,-430	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.544	0/1:362:226,136:226:8055:136:4863:-328.844,0,-615.983	0/1:99:46,53:46:1656:53:1888:-140.396,0,-119.526	0/1:42:22,20:22:792:20:712:-51.7625,0,-58.9624	0/1:201:95,106:95:3404:106:3792:-280.965,0,-246.067	0/1:230:123,107:123:4416:107:3799:-272.871,0,-328.374	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.39	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/1:14:4,10:4:140:10:360:-28.5299,0,-8.73016	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:4:2,2:2:68:2:57:-4.20919,0,-5.25359	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/0:266:266,0:266:9564:0:0:0,-80.074,-860.709	0/0:161:161,0:161:5780:0:0:0,-48.4658,-520.313	0/1:81:40,41:40:1432:41:1460:-107.313,0,-104.793	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:205:108,97:108:3857:97:3453:-248.895,0,-285.613	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/0:158:158,0:158:5653:0:0:0,-47.5627,-508.866	0/0:114:113,0:113:4055:0:0:0,-34.0164,-364.776	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.957	0/0:59:59,0:59:2112:0:0:0,-17.7608,-189.722	0/1:113:58,55:58:2080:55:1955:-142.114,0,-153.454	0/0:136:135,1:135:4843:1:36:0,-37.3418,-431.934	0/0:111:110,0:110:3956:0:0:0,-33.1133,-356.018	0/1:306:171,134:171:6124:134:4792:-339.26,0,-459.064	0/0:210:210,0:210:7532:0:0:0,-63.2163,-677.813	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:196:196,0:196:7011:0:0:0,-59.0019,-631.05	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:29:9,20:9:324:20:720:-56.3989,0,-20.776	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.781	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:105:60,45:60:2156:45:1602:-112.857,0,-162.699	0/0:190:185,4:185:6648:4:144:0,-43.9409,-585.081	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:126:64,62:64:2276:62:2203:-160.605,0,-167.17	0/1:227:108,119:108:3880:119:4264:-315.604,0,-281.031	0/1:122:61,61:61:2192:61:2183:-160.005,0,-160.82	0/1:106:50,56:50:1784:56:2003:-148.634,0,-128.934	0/0:223:222,1:222:7918:1:36:0,-63.5314,-709.036	0/0:214:213,1:213:7612:1:36:0,-60.8221,-681.519	0/1:35:18,17:18:648:17:612:-44.8774,0,-48.1158	0/1:110:47,63:47:1692:63:2253:-169.918,0,-119.454	0/1:147:76,69:76:2732:69:2422:-174.219,0,-202.113	0/1:40:23,17:23:828:17:598:-42.1017,0,-62.8029	0/0:132:132,0:132:4707:0:0:0,-39.736,-423.764	0/1:118:63,55:63:2253:55:1957:-140.882,0,-167.51	0/1:124:59,65:59:2124:65:2310:-170.811,0,-153.971	0/0:139:139,0:139:4992:0:0:0,-41.8432,-449.426	0/1:227:128,99:128:4596:99:3544:-250.835,0,-345.465	0/0:77:74,3:74:2660:3:108:0,-13.1041,-229.57	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	0/1:89:39,50:39:1396:50:1773:-133.023,0,-99.1474	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:154:65,89:65:2332:89:3179:-239.975,0,-163.781	0/1:122:60,62:60:2152:62:2174:-159.199,0,-157.222	0/1:96:45,51:45:1612:51:1810:-134.281,0,-116.471	0/0:121:121,0:121:4344:0:0:0,-36.4246,-390.644	0/0:203:197,6:197:7071:6:216:0,-41.3186,-616.655	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:110:55,55:55:1972:55:1921:-140.049,0,-144.642	0/1:90:48,42:48:1719:42:1495:-107.751,0,-127.902	0/1:73:44,29:44:1576:29:1044:-72.2996,0,-120.014	0/1:171:82,89:82:2944:89:3134:-230.808,0,-213.717	0/1:95:31,64:31:1116:64:2268:-175.783,0,-72.1538	0/0:75:74,1:74:2652:1:36:0,-18.979,-235.328	0/0:113:113,0:113:4053:0:0:0,-34.0164,-364.955
chr11	30371225	.	A	C	126051	PASS	AB=0.483257;ABP=14.1357;AC=132;AF=0.709677;AN=186;AO=6215;CIGAR=1X;DP=8980;DPB=8980;DPRA=0;EPP=13498.7;EPPR=6000.62;GTI=2;LEN=1;MEANALT=1.03226;MQM=59.9696;MQMR=59.8925;NS=93;NUMALT=1;ODDS=0.310174;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=219582;QR=97716;RO=2762;RPL=6215;RPP=13498.7;RPPR=6000.62;RPR=0;RUN=1;SAF=6215;SAP=13498.7;SAR=0;SRF=2762;SRP=6000.62;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:163:0,163:0:0:163:5812:-523.196,-49.0679,0	0/1:101:62,39:62:2200:39:1392:-95.175,0,-167.666	0/1:144:56,88:56:1963:88:3119:-237.59,0,-133.594	0/1:82:51,31:51:1788:31:1108:-75.3465,0,-136.515	0/1:78:44,34:44:1560:34:1212:-85.906,0,-117.211	1/1:139:0,139:0:0:139:4941:-444.814,-41.8432,0	0/1:240:129,111:129:4564:111:3956:-283.978,0,-338.68	0/1:66:41,25:41:1464:25:896:-61.0924,0,-112.188	1/1:148:0,148:0:0:148:5250:-472.639,-44.5524,0	0/1:83:49,34:49:1727:34:1194:-82.7791,0,-130.729	1/1:83:0,83:0:0:83:2936:-264.477,-24.9855,0	0/1:85:40,45:40:1428:45:1608:-119.422,0,-103.23	1/1:160:0,160:0:0:160:5658:-509.345,-48.1648,0	1/1:79:0,79:0:0:79:2790:-251.339,-23.7814,0	1/1:70:0,70:0:0:70:2441:-219.943,-21.0721,0	0/1:137:73,64:73:2588:64:2292:-165.3,0,-191.302	0/1:67:34,33:34:1208:33:1188:-87.0596,0,-88.8571	1/1:50:0,50:0:0:50:1772:-159.763,-15.0515,0	1/1:150:1,149:1:36:149:5290:-472.641,-41.5562,0	0/1:132:62,70:62:2184:70:2409:-177.308,0,-157.088	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:35:22,13:22:780:13:438:-29.2036,0,-59.987	1/1:145:8,137:8:288:137:4836:-409.135,-17.3819,0	1/1:46:0,46:0:0:46:1611:-145.267,-13.8474,0	0/0:139:133,6:133:4690:6:203:0,-23.242,-403.66	0/1:95:52,43:52:1831:43:1517:-108.223,0,-136.472	0/1:42:20,22:20:716:22:775:-57.4279,0,-52.1245	0/0:107:104,3:104:3662:3:104:0,-22.5074,-320.081	0/1:226:110,116:110:3894:116:4013:-293.325,0,-282.624	1/1:109:0,109:0:0:109:3854:-347.056,-32.8123,0	0/1:13:2,11:2:72:11:388:-31.344,0,-2.92333	0/1:14:10,4:10:356:4:140:-8.73016,0,-28.1668	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:19:0,19:0:0:19:659:-59.6323,-5.71957,0	1/1:160:0,160:0:0:160:5710:-513.996,-48.1648,0	0/1:76:40,36:40:1420:36:1284:-92.9851,0,-105.219	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:200:97,103:97:3414:103:3654:-268.858,0,-246.777	1/1:56:0,56:0:0:56:1972:-177.752,-16.8577,0	1/1:148:0,148:0:0:148:5229:-470.729,-44.5524,0	1/1:109:0,109:0:0:109:3861:-347.688,-32.8123,0	1/1:73:0,73:0:0:73:2582:-232.629,-21.9752,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/1:110:54,56:54:1936:56:1984:-145.721,0,-141.28	1/1:128:1,127:1:36:127:4510:-401.983,-34.9336,0	1/1:105:0,105:0:0:105:3664:-329.965,-31.6082,0	0/1:294:133,161:133:4693:161:5684:-423.178,0,-334.031	1/1:14:0,14:0:0:14:497:-45.0648,-4.21442,0	1/1:9:0,9:0:0:9:300:-27.3221,-2.70927,0	1/1:181:0,181:0:0:181:6472:-582.567,-54.4864,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:29:20,9:20:700:9:324:-20.776,0,-54.5936	1/1:84:0,84:0:0:84:2916:-262.676,-25.2865,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:8:7,1:7:243:1:36:-1.19004,0,-19.7992	.:.:.:.:.:.:.:.	0/1:104:44,60:44:1563:60:2093:-157.329,0,-109.649	1/1:188:4,184:4:144:184:6503:-572.049,-43.28,0	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/0:72:67,5:67:2356:5:176:0,-5.48914,-196.113	0/1:229:123,106:123:4358:106:3710:-265.156,0,-323.462	0/1:122:62,60:62:2187:60:2106:-153.083,0,-160.37	0/1:106:58,48:58:2067:48:1691:-120.566,0,-154.391	1/1:209:2,207:2:72:207:7289:-649.243,-56.0898,0	1/1:210:1,208:1:36:208:7282:-651.842,-59.6768,0	0/1:36:18,18:18:640:18:648:-47.8148,0,-46.962	0/1:110:64,46:64:2272:46:1644:-115.135,0,-171.63	0/0:76:71,5:71:2510:5:165:0,-7.70468,-210.974	0/1:40:18,22:18:640:22:771:-57.6685,0,-45.8513	1/1:121:0,121:0:0:121:4280:-385.359,-36.4246,0	0/1:108:54,53:54:1928:53:1896:-138.348,0,-141.226	0/1:124:67,57:67:2364:57:2001:-143.034,0,-175.563	1/1:134:0,134:0:0:134:4718:-424.784,-40.338,0	0/1:214:95,119:95:3372:119:4228:-316.278,0,-239.191	1/1:73:3,70:3:108:70:2492:-214.459,-11.9,0	0/1:17:11,6:11:376:6:216:-14.673,0,-29.0436	0/1:89:50,39:50:1771:39:1383:-97.9764,0,-132.881	1/1:50:0,50:0:0:50:1768:-159.403,-15.0515,0	0/1:151:88,63:88:3078:63:2244:-156.768,0,-231.794	0/1:121:62,59:62:2182:59:2077:-150.774,0,-160.221	0/1:93:50,43:50:1788:43:1483:-105.764,0,-133.207	1/1:116:0,116:0:0:116:4061:-365.679,-34.9195,0	1/1:195:6,188:6:207:188:6628:-577.638,-39.7906,0	1/1:44:0,44:0:0:44:1552:-139.972,-13.2453,0	0/1:105:52,53:52:1856:53:1892:-138.95,0,-135.703	0/1:89:42,47:42:1500:47:1656:-122.536,0,-108.503	0/1:72:29,43:29:1032:43:1526:-115.725,0,-71.5193	0/1:168:90,78:90:3169:78:2753:-197.439,0,-234.857	0/1:95:65,30:65:2311:30:1054:-66.5713,0,-179.653	1/1:73:1,72:1:36:72:2530:-224.351,-18.3769,0	1/1:112:0,112:0:0:112:3973:-357.762,-33.7154,0
chr11	30389704	.	A	G	161460	PASS	AB=0.534507;ABP=54.7125;AC=139;AF=0.739362;AN=188;AO=7619;CIGAR=1X;DP=9963;DPB=9963;DPRA=0;EPP=16504.1;EPPR=5071.24;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9702;MQMR=59.9654;NS=94;NUMALT=1;ODDS=3.01621;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272101;QR=83923;RO=2342;RPL=7595;RPP=16339.7;RPPR=4976.31;RPR=24;RUN=1;SAF=7600;SAP=16382.8;SAR=19;SRF=2331;SRP=4993.5;SRR=11;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:112:0,112:0:0:112:4020:-361.988,-33.7154,0	0/1:201:85,116:85:3048:116:4137:-312.006,0,-214.042	0/1:234:122,112:122:4350:112:3999:-289.657,0,-321.232	0/1:113:51,62:51:1832:62:2228:-166.767,0,-131.144	0/1:84:31,53:31:1112:53:1908:-146.711,0,-75.1048	1/1:141:0,141:0:0:141:5068:-456.262,-42.4452,0	0/1:156:75,81:75:2670:81:2866:-211.215,0,-193.582	0/1:55:30,25:30:1072:25:896:-64.4037,0,-80.2358	1/1:100:0,100:0:0:100:3577:-322.136,-30.103,0	0/1:37:22,15:22:784:15:536:-37.4367,0,-59.7458	1/1:82:0,82:0:0:82:2925:-263.484,-24.6845,0	0/1:66:33,33:33:1180:33:1188:-87.3606,0,-86.6401	1/1:49:0,49:0:0:49:1748:-157.602,-14.7505,0	1/1:65:0,65:0:0:65:2320:-209.061,-19.567,0	1/1:41:0,41:0:0:41:1451:-130.885,-12.3422,0	0/1:60:32,28:32:1148:28:1008:-72.9746,0,-85.568	0/1:33:12,21:12:432:21:756:-58.4332,0,-29.2872	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:217:0,217:0:0:217:7754:-697.889,-65.3235,0	0/1:101:54,47:54:1936:47:1688:-121.803,0,-144.112	1/1:169:0,169:0:0:169:6053:-544.871,-50.8741,0	0/1:84:34,50:34:1212:50:1796:-136.636,0,-84.0998	1/1:151:8,142:8:288:142:5081:-431.165,-19.2469,0	1/1:92:0,92:0:0:92:3264:-293.98,-27.6948,0	0/1:410:184,226:184:6589:226:8085:-604.242,0,-469.176	0/1:196:82,114:82:2948:114:4032:-304.067,0,-206.551	0/1:34:14,20:14:504:20:720:-54.8938,0,-35.4631	0/1:332:155,177:155:5560:177:6359:-472.455,0,-400.581	0/1:139:64,75:64:2300:75:2696:-201.041,0,-165.418	1/1:158:1,157:1:36:157:5632:-503.401,-43.9645,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:19:5,14:5:180:14:504:-39.9785,0,-10.8325	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:223:0,223:0:0:223:7977:-717.941,-67.1297,0	1/1:245:0,245:0:0:245:8735:-785.121,-73.7524,0	0/1:55:34,21:34:1224:21:756:-51.8106,0,-93.9104	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:208:78,129:78:2800:129:4617:-353.019,0,-189.567	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:168:0,168:0:0:168:6013:-540.248,-50.573,0	1/1:52:1,51:1:32:51:1817:-160.61,-12.4542,0	1/1:65:0,65:0:0:65:2321:-209.149,-19.567,0	1/1:144:0,144:0:0:144:5157:-464.27,-43.3483,0	0/1:89:45,44:45:1601:44:1557:-113.628,0,-117.587	1/1:216:0,216:0:0:216:7673:-690.605,-65.0225,0	1/1:154:0,154:0:0:154:5505:-495.576,-46.3586,0	0/1:126:53,73:53:1893:73:2586:-195.057,0,-132.716	1/1:234:0,234:0:0:234:8346:-751.144,-70.441,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:133:0,133:0:0:133:4772:-429.636,-40.037,0	1/1:98:0,98:0:0:98:3489:-314.221,-29.5009,0	0/1:34:19,15:19:684:15:536:-38.3398,0,-51.6553	1/1:178:0,178:0:0:178:6375:-573.839,-53.5833,0	1/1:42:0,42:0:0:42:1465:-132.14,-12.6433,0	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	1/1:31:2,29:2:72:29:1033:-86.446,-2.49521,0	0/1:69:37,32:37:1313:32:1144:-82.4984,0,-97.6986	1/1:108:0,108:0:0:108:3854:-347.053,-32.5112,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:283:137,146:137:4909:146:5206:-383.478,0,-356.767	0/1:208:91,117:91:3260:117:4135:-309.718,0,-229.987	0/1:62:39,23:39:1396:23:802:-53.8322,0,-107.275	0/1:115:55,60:55:1968:60:2137:-157.978,0,-142.777	1/1:212:3,209:3:108:209:7485:-663.617,-53.7432,0	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:58:22,36:22:784:36:1292:-99.124,0,-53.4242	0/1:80:39,41:39:1404:41:1472:-108.694,0,-102.577	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	1/1:153:0,153:0:0:153:5500:-494.187,-46.0576,0	0/1:43:17,26:17:612:26:936:-71.6152,0,-42.4691	0/1:143:68,75:68:2418:75:2650:-195.696,0,-174.826	1/1:206:0,206:0:0:206:7313:-658.174,-62.0122,0	0/1:180:73,107:73:2624:107:3802:-287.563,0,-182.152	1/1:106:0,106:0:0:106:3777:-340.129,-31.9092,0	0/1:15:8,7:8:284:7:237:-17.1436,0,-21.3879	0/1:155:75,80:75:2692:80:2845:-209.628,0,-195.865	1/1:141:0,141:0:0:141:5031:-452.928,-42.4452,0	0/1:221:88,133:88:3160:133:4760:-362.029,0,-218.097	0/1:127:64,63:64:2304:63:2260:-165.432,0,-169.39	0/1:53:21,32:21:756:32:1148:-87.6752,0,-52.4126	1/1:89:0,89:0:0:89:3166:-285.162,-26.7917,0	1/1:109:0,109:0:0:109:3900:-351.194,-32.8123,0	1/1:56:0,56:0:0:56:1981:-178.563,-16.8577,0	0/1:71:44,27:44:1584:27:968:-66.0642,0,-121.478	0/1:56:28,28:28:1008:28:1000:-73.4577,0,-74.1787	0/1:31:19,12:19:684:12:428:-29.5269,0,-52.5584	0/1:57:23,34:23:828:34:1194:-90.6034,0,-57.6854	0/1:42:31,11:31:1116:11:396:-23.3395,0,-88.1084	1/1:139:1,138:1:36:138:4933:-440.521,-38.2449,0	1/1:78:0,78:0:0:78:2800:-252.237,-23.4803,0
chr11	30440864	.	GCT	ACT	177113	PASS	AB=0.498409;ABP=3.12775;AC=139;AF=0.739362;AN=188;AO=7107;CIGAR=1X2M;DP=9827;DPB=9827.33;DPRA=0;EPP=4338.71;EPPR=837.618;GTI=0;LEN=1;MEANALT=1.23404;MQM=59.9782;MQMR=59.9614;NS=94;NUMALT=1;ODDS=2.78398;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=249910;QR=93138;RO=2691;RPL=1670;RPP=4338.71;RPPR=837.618;RPR=5437;RUN=1;SAF=7107;SAP=15435.7;SAR=0;SRF=2691;SRP=5846.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1074:-96.964,-9.33193,0	1/1:135:1,134:1:36:134:4716:-420.999,-37.0408,0	0/1:190:103,86:103:3555:86:3043:-216.941,0,-263.005	0/1:317:135,181:135:4668:181:6357:-476.736,0,-324.807	0/1:97:43,54:43:1481:54:1924:-144.237,0,-104.379	0/1:63:30,33:30:1011:33:1154:-85.1974,0,-72.3242	1/1:107:0,107:0:0:107:3774:-339.856,-32.2102,0	0/1:138:80,57:80:2780:57:1993:-138.118,0,-208.919	0/1:103:46,57:46:1590:57:2014:-150.523,0,-112.379	1/1:112:0,112:0:0:112:3990:-359.288,-33.7154,0	0/1:53:28,24:28:982:24:826:-58.6389,0,-72.6776	1/1:76:0,76:0:0:76:2705:-243.68,-22.8783,0	0/1:99:49,49:49:1711:49:1749:-127.831,0,-124.405	1/1:83:0,83:0:0:83:2964:-266.994,-24.9855,0	1/1:95:0,95:0:0:95:3312:-298.298,-28.5979,0	1/1:89:0,89:0:0:89:3120:-281.024,-26.7917,0	0/1:92:49,42:49:1710:42:1477:-105.557,0,-126.517	0/1:97:49,48:49:1727:48:1690:-123.183,0,-126.514	1/1:64:0,64:0:0:64:2216:-199.699,-19.2659,0	1/1:95:0,95:0:0:95:3355:-302.161,-28.5979,0	0/1:183:101,82:101:3456:82:2925:-208.395,0,-256.167	1/1:51:0,51:0:0:51:1794:-161.738,-15.3525,0	0/1:62:27,35:27:951:35:1237:-92.9684,0,-67.2415	1/1:98:6,92:6:190:92:3281:-278.098,-12.0897,0	1/1:73:0,73:0:0:73:2592:-233.53,-21.9752,0	0/1:382:188,193:188:6508:193:6780:-495.343,0,-470.888	0/1:193:98,95:98:3406:95:3373:-245.688,0,-248.602	0/1:40:17,23:17:598:23:824:-62.4421,0,-42.1067	0/1:200:85,115:85:2924:115:4072:-306.459,0,-203.191	1/1:107:1,105:1:36:105:3630:-323.359,-28.6158,0	1/1:127:4,123:4:136:123:4334:-377.66,-25.6559,0	0/1:12:4,8:4:136:8:280:-21.9264,0,-8.9626	0/1:19:5,14:5:178:14:504:-39.9785,0,-10.6491	0/1:6:5,1:5:170:1:36:-1.79209,0,-13.8278	0/1:10:6,4:6:205:4:144:-10.3033,0,-15.7738	1/1:26:0,26:0:0:26:902:-81.4903,-7.82678,0	1/1:213:0,213:0:0:213:7525:-677.296,-64.1194,0	1/1:229:0,229:0:0:229:7999:-719.932,-68.9359,0	0/1:82:44,38:44:1562:38:1353:-97.3839,0,-116.188	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:227:122,104:122:4185:104:3603:-256.16,0,-308.525	1/1:79:0,79:0:0:79:2752:-247.891,-23.7814,0	1/1:71:0,65:0:0:65:2264:-203.658,-19.567,0	1/1:75:0,75:0:0:75:2635:-237.394,-22.5773,0	1/1:67:0,67:0:0:67:2343:-211.126,-20.169,0	1/1:84:0,84:0:0:84:2932:-264.109,-25.2865,0	0/1:150:83,67:83:2799:67:2337:-165.428,0,-206.993	1/1:222:0,222:0:0:222:7684:-691.605,-66.8287,0	1/1:67:0,67:0:0:67:2374:-213.915,-20.169,0	0/1:162:78,84:78:2697:84:2966:-218.405,0,-194.198	1/1:149:0,147:0:0:147:5153:-463.552,-44.2514,0	1/1:10:0,10:0:0:10:341:-31.0178,-3.0103,0	1/1:123:0,123:0:0:123:4340:-390.774,-37.0267,0	1/1:25:0,25:0:0:25:866:-78.2514,-7.52575,0	0/1:41:26,15:26:892:15:540:-36.5943,0,-68.2471	1/1:153:1,149:1:36:149:5189:-463.574,-41.9069,0	1/1:62:3,59:3:108:59:2032:-173.072,-8.58869,0	0/1:16:10,6:10:343:6:197:-13.2348,0,-26.3829	1/1:14:0,14:0:0:14:481:-43.6151,-4.21442,0	0/1:40:19,21:19:649:21:715:-52.621,0,-46.6866	1/1:142:1,140:1:36:140:4996:-446.189,-39.2068,0	0/1:24:18,6:18:644:6:216:-12.5658,0,-51.0661	0/1:222:99,121:99:3410:121:4215:-312.994,0,-240.522	0/1:191:91,100:91:3214:100:3542:-261.456,0,-231.986	0/1:63:39,24:39:1326:24:860:-58.7569,0,-100.668	0/1:78:39,39:39:1375:39:1342:-97.5916,0,-100.568	1/1:202:1,200:1:36:200:6939:-621.056,-57.1935,0	1/1:90:0,90:0:0:90:3167:-285.253,-27.0927,0	0/1:29:13,16:13:428:16:572:-43.0836,0,-30.1056	0/1:75:27,48:27:970:48:1724:-132.868,0,-65.0405	0/1:116:67,49:67:2304:49:1752:-123.045,0,-172.697	0/1:14:5,9:5:175:9:309:-23.9263,0,-11.879	1/1:105:0,105:0:0:105:3742:-336.978,-31.6082,0	0/1:46:26,20:26:910:20:712:-50.5393,0,-68.3677	0/1:167:71,96:71:2445:96:3371:-253.325,0,-170.032	1/1:158:0,158:0:0:158:5592:-503.403,-47.5627,0	0/1:144:72,72:72:2445:72:2444:-176.858,0,-176.955	1/1:142:0,141:0:0:141:4928:-443.418,-42.4452,0	0/1:27:12,15:12:418:15:508:-37.9122,0,-29.8248	0/1:123:57,66:57:1977:66:2334:-173.281,0,-141.176	1/1:90:0,90:0:0:90:3152:-283.902,-27.0927,0	0/1:281:163,118:163:5658:118:4182:-291.97,0,-424.76	0/1:117:66,51:66:2294:51:1832:-129.94,0,-171.499	0/1:91:44,47:44:1542:47:1664:-122.654,0,-111.677	1/1:122:0,121:0:0:121:4296:-386.454,-36.4246,0	1/1:128:4,124:4:144:124:4426:-385.195,-25.2182,0	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	0/1:84:43,41:43:1465:41:1442:-104.785,0,-106.852	0/1:96:45,51:45:1588:51:1828:-135.902,0,-114.311	0/1:64:27,36:27:913:36:1228:-91.4896,0,-63.1517	0/1:124:59,65:59:2039:65:2284:-168.487,0,-146.451	0/1:93:55,37:55:1930:37:1286:-87.9825,0,-145.921	1/1:125:0,125:0:0:125:4329:-389.517,-37.6288,0	1/1:118:1,116:1:36:116:4130:-368.284,-31.9821,0
chr11	30440867	.	G	T	43314.3	PASS	AB=0.479282;ABP=23.1649;AC=49;AF=0.260638;AN=188;AO=2614;CIGAR=1X;DP=10107;DPB=10107;DPRA=1.16573;EPP=5635.89;EPPR=15545.5;GTI=0;LEN=1;MEANALT=1.08333;MQM=59.9614;MQMR=59.9804;NS=94;NUMALT=1;ODDS=7.74033;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93344;QR=267714;RO=7482;RPL=2609;RPP=5635.89;RPPR=15545.5;RPR=5;RUN=1;SAF=2614;SAP=5679.24;SAR=0;SRF=7482;SRP=16250;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:147:146,1:146:5235:1:36:0,-40.6531,-467.688	0/1:193:91,102:91:3245:102:3654:-270.963,0,-234.172	0/1:323:189,134:189:6775:134:4778:-332.943,0,-512.588	0/1:98:55,43:55:1968:43:1532:-108.672,0,-147.894	0/1:60:34,26:34:1208:26:936:-66.4953,0,-90.9643	0/0:112:111,1:111:3956:1:36:0,-30.1171,-352.632	0/1:139:59,80:59:2096:80:2872:-216.873,0,-147.067	0/1:108:64,44:64:2279:44:1580:-109.98,0,-172.86	0/0:115:115,0:115:4115:0:0:0,-34.6184,-370.534	0/1:55:27,27:27:972:27:972:-71.2209,0,-71.2209	0/0:77:77,0:77:2741:0:0:0,-23.1793,-246.928	0/1:99:53,46:53:1904:46:1652:-119.158,0,-141.836	0/0:85:85,0:85:3044:0:0:0,-25.5875,-274.19	0/0:103:103,0:103:3700:0:0:0,-31.0061,-333.201	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.27	0/1:96:48,48:48:1720:48:1696:-124.024,0,-126.187	0/1:100:52,48:52:1868:48:1724:-125.342,0,-138.296	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/0:97:97,0:97:3461:0:0:0,-29.1999,-311.696	0/1:180:83,97:83:2980:97:3447:-256.256,0,-214.246	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/1:68:41,27:41:1472:27:964:-66.6068,0,-112.305	0/0:100:95,5:95:3404:5:180:0,-13.5509,-290.022	0/0:80:79,0:79:2823:0:0:0,-23.7814,-253.949	0/1:384:202,182:202:7238:182:6514:-470.748,0,-535.875	0/1:196:101,95:101:3620:95:3388:-246.126,0,-267.003	0/1:43:26,17:26:932:17:612:-42.4691,0,-71.2546	0/1:199:118,81:118:4224:81:2892:-200.612,0,-320.435	0/0:117:115,2:115:4101:2:61:0,-29.4273,-363.482	0/0:135:131,4:131:4684:4:140:0,-27.6945,-408.777	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:20:15,5:15:540:5:170:-9.61289,0,-42.9159	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:221:221,0:221:7916:0:0:0,-66.5276,-712.461	0/0:246:246,0:246:8823:0:0:0,-74.0534,-794.044	0/1:82:39,42:39:1381:42:1503:-110.821,0,-99.8437	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:228:108,120:108:3872:120:4271:-315.933,0,-280.04	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.07	0/0:77:76,1:76:2728:1:36:0,-19.581,-242.164	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/0:70:70,0:70:2511:0:0:0,-21.0721,-226.241	0/0:92:92,0:92:3283:0:0:0,-27.6948,-295.69	0/1:152:72,80:72:2584:80:2864:-212.239,0,-187.052	0/0:236:234,0:234:8375:0:0:0,-70.441,-753.395	0/0:73:73,0:73:2611:0:0:0,-21.9752,-235.237	0/1:161:87,74:87:3124:74:2645:-189.825,0,-232.92	0/0:155:155,0:155:5547:0:0:0,-46.6596,-499.354	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:129:128,0:128:4595:0:0:0,-38.5318,-413.353	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:42:16,26:16:561:26:919:-70.3829,0,-38.1739	0/0:160:158,1:158:5642:1:36:0,-44.6253,-504.3	0/0:67:64,3:64:2281:3:102:0,-10.6526,-196.034	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:39:21,17:21:739:17:604:-42.9956,0,-55.1386	0/0:143:142,1:142:5100:1:36:0,-39.449,-455.543	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.5032	0/1:221:126,95:126:4488:95:3381:-237.917,0,-337.561	0/1:196:108,88:108:3868:88:3154:-225.083,0,-289.277	0/1:62:24,38:24:864:38:1356:-103.677,0,-59.4187	0/1:75:40,35:40:1428:35:1256:-90.768,0,-106.24	0/0:207:206,1:206:7361:1:36:0,-58.7149,-658.87	0/0:95:95,0:95:3384:0:0:0,-28.5978,-304.774	0/1:29:16,13:16:576:13:468:-33.7298,0,-43.4451	0/1:75:49,26:49:1741:26:932:-61.6216,0,-134.395	0/1:117:51,66:51:1824:66:2368:-178.158,0,-129.221	0/1:15:10,5:10:356:5:180:-12.0366,0,-27.8658	0/0:103:103,0:103:3679:0:0:0,-31.0061,-331.313	0/1:50:24,26:24:849:26:936:-69.508,0,-61.6563	0/1:167:99,66:99:3496:66:2338:-160.649,0,-264.714	0/0:163:163,0:163:5837:0:0:0,-49.0679,-525.44	0/1:146:78,68:78:2804:68:2398:-172.125,0,-208.649	0/0:142:142,0:142:5083:0:0:0,-42.7463,-457.613	0/1:28:16,12:16:572:12:424:-30.0676,0,-43.3846	0/1:125:69,56:69:2476:56:2008:-143.365,0,-185.455	0/0:95:95,0:95:3396:0:0:0,-28.5978,-305.855	0/1:291:129,162:129:4628:162:5768:-431.635,0,-329.082	0/1:117:53,64:53:1887:64:2283:-170.511,0,-134.887	0/1:93:49,44:49:1751:44:1580:-114.496,0,-129.878	0/0:126:126,0:126:4508:0:0:0,-37.9298,-405.886	0/0:130:127,3:127:4560:3:108:0,-29.0587,-400.485	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/1:83:41,42:41:1476:42:1512:-111.381,0,-108.151	0/1:98:53,45:53:1885:45:1599:-114.699,0,-140.426	0/1:67:41,26:41:1463:26:936:-64.3905,0,-111.796	0/1:122:66,56:66:2364:56:2000:-143.548,0,-176.288	0/1:95:40,55:40:1436:55:1963:-148.347,0,-100.94	0/0:135:135,0:135:4844:0:0:0,-40.639,-436.113	0/0:129:128,0:128:4583:0:0:0,-38.5318,-412.274
chr11	30506108	.	TT	CT,CA	350904	PASS	AB=0.514989,0.482774;ABP=20.4559,26.0522;AC=138,50;AF=0.734043,0.265957;AN=188;AO=12919,4366;CIGAR=1X1M,2X;DP=17312;DPB=17312;DPRA=0,1.01446;EPP=27934.8,9483.66;EPPR=13.8677;GTI=3;LEN=1,2;MEANALT=1.84043,2.23729;MQM=47.3653,34.2485;MQMR=60;NS=94;NUMALT=2;ODDS=0.50821;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=460307,154607;QR=178;RO=5;RPL=14,0;RPP=27934.8,9483.66;RPPR=13.8677;RPR=12905,4366;RUN=1,1;SAF=12919,4366;SAP=28056.3,9483.66;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:128:0,128,0:0:0:128,0:4542,0:-405.458,-38.5318,0,-405.458,-38.5318,-405.458	1/1:289:0,288,0:0:0:288,0:10262,0:-917.526,-86.6966,0,-917.526,-86.6966,-917.526	1/2:245:0,142,103:0:0:142,103:5047,3673:-675.479,-266.955,-224.209,-408.858,0,-377.852	1/2:535:0,304,229:0:0:304,229:10852,8114:-1453.56,-578.474,-486.961,-875.129,0,-806.193	1/2:184:0,99,85:0:0:99,85:3523,2991:-499.69,-214.87,-185.068,-285.153,0,-259.565	1/2:135:0,59,76:0:0:59,76:2096,2710:-364.851,-195.289,-177.529,-169.9,0,-147.021	1/1:363:0,363,0:0:0:363,0:12943,0:-1153.27,-109.274,0,-1153.27,-109.274,-1153.27	1/2:276:1,145,127:1:36:145,127:5140,4503:-732.925,-317.962,-277.251,-412.322,0,-377.029	1/2:205:0,93,112:0:0:93,112:3316,3957:-553.656,-285.483,-257.487,-268.509,0,-234.794	1/1:236:0,236,0:0:0:236,0:8418,0:-750.057,-71.0431,0,-750.057,-71.0431,-750.057	1/2:59:0,29,30:0:0:29,30:1038,1078:-160.907,-77.2737,-68.5438,-83.9699,0,-74.939	1/1:92:0,92,0:0:0:92,0:3252,0:-290.644,-27.6948,0,-290.644,-27.6948,-290.644	1/2:95:0,55,40:0:0:55,40:1953,1433:-262.709,-105.05,-88.4935,-157.995,0,-145.954	1/1:63:0,63,0:0:0:63,0:2254,0:-201.162,-18.9649,0,-201.162,-18.9649,-201.162	1/1:104:0,104,0:0:0:104,0:3713,0:-331.29,-31.3071,0,-331.29,-31.3071,-331.29	1/1:78:0,78,0:0:0:78,0:2779,0:-247.781,-23.4803,0,-247.781,-23.4803,-247.781	1/2:74:0,37,37:0:0:37,37:1320,1328:-204.231,-97.6351,-86.497,-106.936,0,-95.7976	1/2:75:0,30,45:0:0:30,45:1068,1587:-200.39,-113.926,-104.895,-86.8018,0,-73.2555	1/1:44:0,44,0:0:0:44,0:1578,0:-140.899,-13.2453,0,-140.899,-13.2453,-140.899	1/1:601:0,600,0:0:0:600,0:21359,0:-1899.37,-180.618,0,-1899.37,-180.618,-1899.37	1/2:341:0,202,139:0:0:202,139:7167,4929:-936.626,-358.823,-298.014,-578.136,0,-536.293	1/1:209:0,209,0:0:0:209,0:7444,0:-662.054,-62.9153,0,-662.054,-62.9153,-662.054	1/2:203:2,105,96:2:70:105,96:3750,3376:-531.935,-231.167,-205.255,-295.654,0,-272.45	1/1:262:0,252,10:0:0:252,10:8979,360:-800.535,-75.8596,0,-774.172,-49.1683,-771.161	1/1:145:0,144,0:0:0:144,0:5124,0:-457.634,-43.3483,0,-457.634,-43.3483,-457.634	1/2:540:0,294,244:0:0:294,244:10462,8649:-1459.94,-616.529,-528.026,-843.447,0,-769.996	1/2:464:1,233,230:1:36:233,230:8319,8167:-1260.63,-590.501,-523.299,-667.474,0,-601.174	1/2:58:0,33,25:0:0:33,25:1175,885:-159.983,-64.9448,-55.0108,-95.373,0,-87.8473	1/2:671:0,318,352:0:0:318,352:11354,12528:-1804.96,-889.756,-794.029,-915.331,0,-809.368	1/1:225:0,218,7:0:0:218,7:7769,252:-692.354,-65.6245,0,-674.011,-46.9563,-671.904	1/1:213:0,208,5:0:0:208,5:7424,173:-660.58,-62.6142,0,-648.228,-49.953,-646.723	1/2:5:0,2,3:0:0:2,3:72,108:-14.0294,-8.18615,-7.58409,-6.18746,0,-5.28437	1/2:9:0,3,6:0:0:3,6:108,216:-23.0412,-14.2743,-13.3712,-9.10253,0,-7.29635	1/2:4:0,2,2:0:0:2,2:72,70:-11.3295,-5.47066,-4.8686,-6.1976,0,-5.59554	2/2:18:0,1,17:0:0:1,17:36,589:-47.5249,-44.6025,-44.3014,-5.11751,-1.83977,0	1/1:6:0,6,0:0:0:6,0:216,0:-19.6832,-1.80618,0,-19.6832,-1.80618,-19.6832	1/1:247:0,246,0:0:0:246,0:8784,0:-781.744,-74.0534,0,-781.744,-74.0534,-781.744	1/1:285:0,285,0:0:0:285,0:10183,0:-909.341,-85.7936,0,-909.341,-85.7936,-909.341	1/2:66:0,35,31:0:0:35,31:1249,1114:-181.772,-80.7568,-70.2207,-101.353,0,-92.0206	1/1:4:0,4,0:0:0:4,0:144,0:-13.24,-1.20412,0,-13.24,-1.20412,-13.24	1/2:341:0,156,185:0:0:156,185:5556,6549:-923.032,-474.838,-427.878,-448.531,0,-392.84	1/1:37:0,37,0:0:0:37,0:1328,0:-119.009,-11.1381,0,-119.009,-11.1381,-119.009	1/1:334:0,333,0:0:0:333,0:11893,0:-1060.91,-100.243,0,-1060.91,-100.243,-1060.91	1/1:108:0,108,0:0:0:108,0:3869,0:-345.031,-32.5112,0,-345.031,-32.5112,-345.031	1/1:97:0,97,0:0:0:97,0:3390,0:-301.592,-29.1999,0,-301.592,-29.1999,-301.592	1/1:184:0,184,0:0:0:184,0:6590,0:-586.645,-55.3895,0,-586.645,-55.3895,-586.645	1/2:283:0,151,132:0:0:151,132:5385,4672:-776.692,-340.483,-295.028,-436.544,0,-396.808	1/1:363:0,363,0:0:0:363,0:12905,0:-1149.11,-109.274,0,-1149.11,-109.274,-1149.11	1/1:249:0,249,0:0:0:249,0:8919,0:-795.394,-74.9565,0,-795.394,-74.9565,-795.394	1/2:213:0,117,96:0:0:117,96:4128,3420:-571.753,-239.053,-203.832,-333.028,0,-304.129	1/1:341:0,341,0:0:0:341,0:12076,0:-1075.91,-102.651,0,-1075.91,-102.651,-1075.91	1/1:9:0,9,0:0:0:9,0:320,0:-28.9013,-2.70927,0,-28.9013,-2.70927,-28.9013	1/1:315:0,315,0:0:0:315,0:11249,0:-1005.87,-94.8245,0,-1005.87,-94.8245,-1005.87	1/1:82:0,81,1:0:0:81,1:2893,23:-257.723,-24.3834,0,-255.985,-22.4175,-255.684	1/2:17:0,9,8:0:0:9,8:316,288:-46.8928,-21.2887,-18.5795,-25.9403,0,-23.5321	1/1:264:0,263,0:0:0:263,0:9336,0:-83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chr11	30506188	.	T	A	64090.4	PASS	AB=0.501534;ABP=3.16356;AC=49;AF=0.260638;AN=188;AO=3780;CIGAR=1X;DP=13651;DPB=13651;DPRA=1.15039;EPP=8202.49;EPPR=21428.9;GTI=1;LEN=1;MEANALT=1.03704;MQM=59.9788;MQMR=59.9795;NS=94;NUMALT=1;ODDS=1.40873;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135471;QR=353032;RO=9867;RPL=3780;RPP=8211.18;RPPR=21428.9;RPR=0;RUN=1;SAF=1;SAP=8202.49;SAR=3779;SRF=0;SRP=21428.9;SRR=9867;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:185:185,0:185:6580:0:0:0,-55.6905,-592.279	0/1:133:57,76:57:2052:76:2732:-206.085,0,-144.914	0/1:387:219,168:219:7781:168:6021:-425.493,0,-583.821	0/1:111:48,63:48:1728:63:2268:-170.968,0,-122.391	0/1:116:62,54:62:2198:54:1932:-139.237,0,-163.163	0/0:283:283,0:283:10146:0:0:0,-85.1915,-912.979	0/1:216:91,125:91:3253:125:4489:-339.148,0,-227.959	0/1:185:94,91:94:3361:91:3268:-238.649,0,-247.006	0/0:132:132,0:132:4736:0:0:0,-39.736,-426.397	0/1:87:51,36:51:1828:36:1296:-90.7543,0,-138.611	0/0:110:109,0:109:3916:0:0:0,-32.8123,-352.272	0/1:121:68,53:68:2429:53:1904:-135.213,0,-182.439	0/0:101:101,0:101:3617:0:0:0,-30.404,-325.734	0/0:107:107,0:107:3818:0:0:0,-32.2102,-343.814	0/0:98:97,1:97:3476:1:36:0,-25.9027,-309.453	0/1:93:50,42:50:1788:42:1504:-107.6,0,-133.148	0/1:102:64,38:64:2304:38:1364:-92.3557,0,-176.915	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/0:337:337,0:337:12081:0:0:0,-101.447,-1087.14	0/1:238:106,132:106:3816:132:4708:-352.233,0,-271.99	0/0:114:114,0:114:4036:0:0:0,-34.3174,-363.425	0/1:183:91,92:91:3276:92:3293:-241.5,0,-239.97	0/0:92:90,2:90:3210:2:72:0,-20.858,-282.283	0/0:112:112,0:112:3990:0:0:0,-33.7154,-359.288	0/1:472:253,219:253:9009:219:7845:-563.989,0,-668.7	0/1:384:196,188:196:7014:188:6739:-490.988,0,-515.706	0/1:52:27,25:27:968:25:900:-65.6675,0,-71.7838	0/1:532:272,260:272:9746:260:9328:-679.306,0,-716.935	0/0:175:164,11:164:5832:11:396:0,-16.6975,-489.007	0/0:186:185,1:185:6595:1:36:0,-52.3933,-590.03	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	0/1:5:1,4:1:36:4:140:-11.4394,0,-2.09312	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:235:235,0:235:8440:0:0:0,-70.742,-759.599	0/0:248:248,0:248:8882:0:0:0,-74.6554,-799.36	0/1:96:38,58:38:1368:58:2084:-158.921,0,-94.5219	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:270:96,174:96:3456:174:6240:-480.416,0,-229.973	0/0:58:58,0:58:2073:0:0:0,-17.4597,-186.839	0/0:195:195,0:195:6940:0:0:0,-58.7008,-624.664	0/0:113:113,0:113:4049:0:0:0,-34.0164,-364.595	0/0:95:94,0:94:3380:0:0:0,-28.2968,-304.055	0/0:188:188,0:188:6681:0:0:0,-56.5936,-601.364	0/1:180:86,94:86:3096:94:3368:-249.151,0,-224.681	0/0:235:235,0:235:8380:0:0:0,-70.742,-754.202	0/0:160:160,0:160:5744:0:0:0,-48.1648,-517.074	0/1:188:107,81:107:3848:81:2912:-205.721,0,-289.921	0/0:105:105,0:105:3764:0:0:0,-31.6081,-338.959	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:173:173,0:173:6168:0:0:0,-52.0782,-555.214	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/0:155:155,0:155:5572:0:0:0,-46.6596,-501.331	0/0:67:67,0:67:2381:0:0:0,-20.169,-214.546	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:131:77,54:77:2734:54:1940:-135.441,0,-206.865	0/0:147:147,0:147:5280:0:0:0,-44.2514,-475.333	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:283:146,137:146:5244:137:4909:-356.767,0,-386.904	0/1:278:128,150:128:4596:150:5370:-399.743,0,-330.117	0/1:105:49,56:49:1730:56:2012:-149.745,0,-124.373	0/1:143:82,61:82:2952:61:2177:-153.147,0,-222.865	0/0:258:252,6:252:9029:6:216:0,-57.8752,-792.367	0/0:148:148,0:148:5304:0:0:0,-44.5524,-477.492	0/1:39:20,19:20:705:19:684:-50.1502,0,-52.0326	0/1:107:60,47:60:2160:47:1688:-119.997,0,-162.456	0/1:126:57,69:57:2033:69:2454:-183.182,0,-145.311	0/1:36:15,21:15:540:21:741:-56.1745,0,-38.0995	0/0:155:155,0:155:5576:0:0:0,-46.6596,-501.96	0/1:94:47,47:47:1688:47:1656:-121.019,0,-123.91	0/1:346:177,169:177:6330:169:6050:-440.446,0,-465.624	0/0:254:254,0:254:9086:0:0:0,-76.4616,-817.713	0/1:74:35,39:35:1260:39:1381:-102.311,0,-91.4293	0/0:134:134,0:134:4794:0:0:0,-40.338,-431.613	0/1:14:5,9:5:172:9:324:-25.2914,0,-11.6036	0/1:139:69,70:69:2450:70:2516:-184.848,0,-178.909	0/1:207:96,111:96:3418:111:3959:-294.188,0,-245.518	0/1:400:193,207:193:6902:207:7429:-548.239,0,-500.814	0/1:124:60,64:60:2160:64:2300:-169.933,0,-157.339	0/1:108:59,49:59:2116:49:1760:-126.17,0,-158.198	0/0:151:151,0:151:5405:0:0:0,-45.4555,-486.579	0/0:204:204,0:204:7309:0:0:0,-61.4101,-657.853	0/0:67:67,0:67:2378:0:0:0,-20.169,-214.275	0/1:116:53,63:53:1900:63:2268:-169.463,0,-136.358	0/1:100:54,45:54:1936:45:1610:-115.067,0,-144.394	0/1:79:42,37:42:1497:37:1332:-96.401,0,-111.241	0/1:100:53,47:53:1908:47:1692:-122.464,0,-141.895	0/1:115:40,75:40:1440:75:2692:-207.906,0,-94.9087	0/0:219:219,0:219:7842:0:0:0,-65.9256,-705.804	0/0:144:144,0:144:5146:0:0:0,-43.3483,-463.149
chr11	30625452	.	CAG	CAAT,CAA	155659	PASS	AB=0.560845,0.435493;ABP=117.165,131.319;AC=134,50;AF=0.728261,0.271739;AN=184;AO=5736,1566;CIGAR=1M1I1M1X,2M1X;DP=7320;DPB=9234.33;DPRA=13.5333,0.936778;EPP=12458.6,3403.54;EPPR=5.18177;GTI=4;LEN=4,1;MEANALT=1.74444,2.16667;MQM=59.9355,59.9911;MQMR=60;NS=92;NUMALT=2;ODDS=3.1067;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=203328,55763;QR=28;RO=1;RPL=0,0;RPP=12458.6,3403.54;RPPR=5.18177;RPR=5736,1566;RUN=1,1;SAF=5736,1566;SAP=12458.6,3403.54;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:4:0,4,0:0:0:4,0:142,0:-13.1292,-1.20412,0,-13.1292,-1.20412,-13.1292	1/1:167:0,166,1:0:0:166,1:5910,28:-531.731,-49.971,0,-529.513,-47.4723,-529.212	1/2:54:0,38,15:0:0:38,15:1346,536:-153.344,-43.6997,-32.2606,-109.641,0,-105.125	1/2:165:0,105,59:0:0:105,59:3715,2105:-474.101,-171.617,-140.008,-302.5,0,-284.739	1/2:36:0,27,9:0:0:27,9:964,320:-105.027,-26.4331,-18.3053,-78.9494,0,-76.2402	1/2:19:0,13,6:0:0:13,6:468,216:-56.1708,-17.9843,-14.0709,-38.5463,0,-36.7401	1/1:93:0,93,0:0:0:93,0:3327,0:-299.642,-27.9958,0,-299.642,-27.9958,-299.642	1/2:94:0,68,26:0:0:68,26:2399,921:-270.721,-75.3784,-54.9084,-195.697,0,-187.87	1/2:63:0,43,20:0:0:43,20:1521,716:-182.629,-58.7471,-45.8028,-124.238,0,-118.217	1/1:154:0,154,0:0:0:154,0:5458,0:-491.344,-46.3586,0,-491.344,-46.3586,-491.344	1/2:53:0,33,20:0:0:33,20:1165,716:-153.614,-58.7471,-48.8131,-95.2225,0,-89.2019	1/1:76:0,76,0:0:0:76,0:2713,0:-244.412,-22.8783,0,-244.412,-22.8783,-244.412	1/2:82:0,43,37:0:0:43,37:1544,1324:-233.925,-107.974,-95.0294,-125.959,0,-114.821	1/1:44:0,44,0:0:0:44,0:1543,0:-139.158,-13.2453,0,-139.158,-13.2453,-139.158	1/1:64:0,64,0:0:0:64,0:2275,0:-205.01,-19.2659,0,-205.01,-19.2659,-205.01	1/1:58:0,58,0:0:0:58,0:2074,0:-186.93,-17.4597,0,-186.93,-17.4597,-186.93	1/2:58:0,18,40:0:0:18,40:632,1428:-168.201,-116.77,-111.351,-51.7843,0,-39.7431	1/2:74:0,33,41:0:0:33,41:1173,1438:-212.959,-117.37,-107.436,-95.943,0,-83.6008	1/1:44:0,44,0:0:0:44,0:1549,0:-139.7,-13.2453,0,-139.7,-13.2453,-139.7	1/1:162:0,162,0:0:0:162,0:5759,0:-517.558,-48.7669,0,-517.558,-48.7669,-517.558	1/2:144:0,85,58:0:0:85,58:3021,2068:-414.75,-168.571,-142.984,-246.174,0,-228.715	1/1:52:0,52,0:0:0:52,0:1857,0:-167.409,-15.6536,0,-167.409,-15.6536,-167.409	1/2:43:0,27,16:0:0:27,16:944,546:-121.443,-44.6428,-36.515,-77.1442,0,-72.3277	1/1:80:0,78,2:0:0:78,2:2787,68:-250.728,-23.4803,0,-245.212,-17.6247,-244.61	1/1:30:0,30,0:0:0:30,0:1062,0:-95.886,-9.0309,0,-95.886,-9.0309,-95.886	1/2:211:0,132,79:0:0:132,79:4669,2796:-608.382,-228.096,-188.36,-380.64,0,-356.858	1/2:121:0,62,59:0:0:62,59:2210,2124:-353.809,-173.667,-155.004,-180.5,0,-162.739	1/2:28:0,9,19:0:0:9,19:314,684:-81.7058,-56.1708,-53.4615,-25.8874,0,-20.1678	1/2:206:0,117,88:0:0:117,88:4149,3149:-594.91,-256.892,-221.671,-338.124,0,-311.633	1/1:78:0,76,2:0:0:76,2:2678,72:-240.906,-22.8783,0,-235.031,-16.6436,-234.429	1/1:88:0,88,0:0:0:88,0:3118,0:-280.847,-26.4906,0,-280.847,-26.4906,-280.847	1/2:6:0,4,2:0:0:4,2:144,72:-17.9843,-6.23466,-5.03054,-12.1095,0,-11.5074	2/2:5:0,0,5:0:0:0,5:0,165:-15.1736,-15.1736,-15.1736,-1.50515,-1.50515,0	1/2:14:0,6,8:0:0:6,8:201,288:-40.125,-23.8592,-22.053,-16.6114,0,-14.2032	2/2:7:0,0,7:0:0:0,7:0,237:-21.6599,-21.6599,-21.6599,-2.10721,-2.10721,0	.:.:.:.:.:.:.:.	1/1:252:0,252,0:0:0:252,0:8968,0:-806.403,-75.8596,0,-806.403,-75.8596,-806.403	1/1:106:0,106,0:0:0:106,0:3736,0:-336.441,-31.9092,0,-336.441,-31.9092,-336.441	1/2:39:0,10,26:0:0:10,26:360,924:-104.7,-75.3238,-72.3135,-29.4023,0,-21.5756	.:.:.:.:.:.:.:.	1/2:85:0,52,32:0:0:52,32:1835,1148:-243.057,-93.6371,-77.9835,-149.417,0,-139.784	1/1:29:0,29,0:0:0:29,0:1016,0:-91.7502,-8.72987,0,-91.7502,-8.72987,-91.7502	1/1:69:0,69,0:0:0:69,0:2446,0:-220.396,-20.7711,0,-220.396,-20.7711,-220.396	1/1:102:0,102,0:0:0:102,0:3603,0:-324.475,-30.7051,0,-324.475,-30.7051,-324.475	1/1:90:0,90,0:0:0:90,0:3161,0:-284.715,-27.0927,0,-284.715,-27.0927,-284.715	1/1:55:0,54,1:0:0:54,1:1911,23:-172.03,-16.2556,0,-170.263,-14.2567,-169.962	1/2:53:0,39,14:0:0:39,14:1359,485:-150.281,-39.7626,-28.0224,-110.865,0,-106.651	1/1:121:0,120,0:0:0:120,0:4230,0:-380.574,-36.1236,0,-380.574,-36.1236,-380.574	1/1:80:0,80,0:0:0:80,0:2854,0:-257.097,-24.0824,0,-257.097,-24.0824,-257.097	1/2:144:0,66,77:0:0:66,77:2336,2768:-416.144,-225.871,-206.003,-190.319,0,-167.139	1/1:152:0,151,0:0:0:151,0:5371,0:-483.253,-45.4555,0,-483.253,-45.4555,-483.253	1/1:13:0,12,0:0:0:12,0:432,0:-38.8798,-3.61236,0,-38.8798,-3.61236,-38.8798	1/1:86:0,86,0:0:0:86,0:3066,0:-276.17,-25.8886,0,-276.17,-25.8886,-276.17	1/1:12:0,12,0:0:0:12,0:424,0:-38.4958,-3.61236,0,-38.4958,-3.61236,-38.4958	1/2:8:0,6,2:0:0:6,2:206,57:-21.5809,-4.81125,-3.00507,-17.0691,0,-16.467	1/1:90:0,90,0:0:0:90,0:3180,0:-286.425,-27.0927,0,-286.425,-27.0927,-286.425	1/1:23:0,23,0:0:0:23,0:820,0:-74.1229,-6.92369,0,-74.1229,-6.92369,-74.1229	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:12:0,12,0:0:0:12,0:427,0:-38.7684,-3.61236,0,-38.7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chr11	30626898	.	A	G	104752	PASS	AB=0.638496;ABP=627.95;AC=61;AF=0.327957;AN=186;AO=5225;CIGAR=1X;DP=9151;DPB=9151;DPRA=2.32483;EPP=11349;EPPR=8515.18;GTI=19;LEN=1;MEANALT=1.09259;MQM=59.9931;MQMR=59.9888;NS=93;NUMALT=1;ODDS=0.55259;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=186401;QR=139265;RO=3920;RPL=0;RPP=11349;RPPR=8515.18;RPR=5225;RUN=1;SAF=5225;SAP=11349;SAR=0;SRF=3920;SRP=8515.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.9338	0/0:38:38,0:38:1337:0:0:0,-11.4391,-120.628	0/1:52:19,33:19:680:33:1188:-91.575,0,-45.8756	0/1:75:44,31:44:1557:31:1108:-77.4537,0,-117.842	0/1:19:8,11:8:269:11:396:-30.2632,0,-18.8166	0/1:39:17,22:17:593:22:792:-59.8655,0,-41.9545	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/1:62:12,50:12:432:50:1796:-143.258,0,-20.5573	0/1:77:44,33:44:1561:33:1169:-82.336,0,-117.6	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/1:291:30,261:30:1072:261:9300:-749.366,0,-9.19273	0/0:102:102,0:102:3634:0:0:0,-30.7051,-327.263	0/1:86:47,39:47:1653:39:1404:-100.771,0,-123.167	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/0:87:87,0:87:3090:0:0:0,-26.1896,-278.326	0/0:72:72,0:72:2508:0:0:0,-21.6742,-225.968	0/1:84:58,26:58:2020:26:936:-59.2729,0,-156.779	0/1:57:38,19:38:1364:19:684:-44.7316,0,-105.902	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.776	0/0:55:55,0:55:1859:0:0:0,-16.5566,-167.577	0/1:70:32,38:32:1133:38:1337:-99.5558,0,-81.2046	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:30:16,14:16:561:14:504:-36.6672,0,-41.7862	0/1:36:29,7:29:1040:7:248:-11.8271,0,-83.0773	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:133:37,96:37:1324:96:3429:-268.785,0,-79.4251	0/1:141:72,69:72:2557:69:2449:-178.2,0,-187.934	0/1:30:21,9:21:752:9:320:-20.1115,0,-58.9754	0/1:107:41,66:41:1476:66:2334:-178.107,0,-100.926	0/1:28:25,3:25:896:3:108:-1.64633,0,-72.5315	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	1/1:249:5,244:5:180:244:8665:-763.291,-58.4044,0	1/1:276:5,271:5:180:271:9670:-853.702,-66.5369,0	1/1:393:1,391:1:36:391:13975:-1253.92,-114.765,0	1/1:436:0,435:0:0:435:15502:-1394.53,-130.948,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:250:250,0:250:8941:0:0:0,-75.2575,-804.671	0/0:30:30,0:30:1050:0:0:0,-9.0309,-94.8063	0/1:240:45,195:45:1582:195:7006:-558.352,0,-70.4192	.:.:.:.:.:.:.:.	0/1:83:29,54:29:1029:54:1921:-148.18,0,-67.9357	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:46:46,0:46:1625:0:0:0,-13.8474,-146.537	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/0:82:82,0:82:2871:0:0:0,-24.6845,-258.626	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:73:33,40:33:1161:40:1432:-107.202,0,-82.8195	0/0:61:61,0:61:2154:0:0:0,-18.3628,-194.124	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:59:17,42:17:612:42:1493:-116.902,0,-37.6527	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.605	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	1/1:318:9,309:9:324:309:10962:-956.974,-66.2217,0	0/0:58:58,0:58:2045:0:0:0,-17.4597,-184.32	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	1/1:160:0,160:0:0:160:5682:-511.497,-48.1648,0	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:43:15,28:15:536:28:1008:-78.0921,0,-35.6305	0/0:149:149,0:149:5329:0:0:0,-44.8535,-479.742	1/1:185:3,182:3:93:182:6494:-575.869,-47.0138,0	0/0:37:34,3:34:1216:3:108:0,-1.06294,-99.6714	0/1:47:16,31:16:572:31:1108:-85.8826,0,-37.665	0/1:76:39,37:39:1385:37:1322:-96.4035,0,-102.069	0/1:39:20,19:20:720:19:672:-49.0661,0,-53.3886	0/0:73:73,0:73:2596:0:0:0,-21.9752,-233.89	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/1:239:27,212:27:956:212:7595:-611.641,0,-14.4096	0/1:43:23,20:23:828:20:716:-51.8234,0,-61.8998	0/1:95:64,31:64:2254:31:1108:-71.4331,0,-174.514	1/1:238:3,235:3:108:235:8384:-744.491,-61.57,0	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:63:28,35:28:1000:35:1260:-94.7406,0,-71.3505	0/1:77:10,67:10:360:67:2362:-189.658,0,-9.56499	0/0:59:59,0:59:2044:0:0:0,-17.7608,-184.225	0/1:63:22,41:22:773:41:1445:-111.379,0,-50.9246	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	1/1:265:0,264:0:0:264:9389:-844.616,-79.4719,0	0/1:48:24,24:24:852:24:860:-63.2724,0,-61.9221	0/1:54:28,26:28:977:26:925:-67.311,0,-71.9849	0/1:141:63,77:63:2256:77:2751:-205.366,0,-160.838	0/1:53:23,30:23:820:30:1044:-78.3124,0,-58.1679	0/1:67:37,30:37:1324:30:1080:-77.3158,0,-99.2931	0/0:102:102,0:102:3649:0:0:0,-30.7051,-328.613	0/0:162:160,2:160:5706:2:72:0,-41.9301,-506.82	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/1:76:48,28:48:1716:28:1000:-67.4371,0,-131.847	0/1:77:41,36:41:1472:36:1296:-93.7646,0,-109.597	1/1:363:30,333:30:1076:333:11914:-974.965,-12.121,0	0/1:497:75,420:75:2642:420:15030:-1203.05,0,-88.6557	0/1:81:36,45:36:1269:45:1612:-120.987,0,-90.1273	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:149:148,1:148:5284:1:36:0,-41.2552,-472.099
chr11	30626905	.	C	T	75040.2	PASS	AB=0.355923;ABP=689.422;AC=125;AF=0.672043;AN=186;AO=3937;CIGAR=1X;DP=9254;DPB=9254;DPRA=0.318396;EPP=8543.41;EPPR=11542.2;GTI=21;LEN=1;MEANALT=1.03333;MQM=59.9891;MQMR=59.9896;NS=93;NUMALT=1;ODDS=0.677763;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140670;QR=190139;RO=5314;RPL=0;RPP=8552.1;RPPR=11542.2;RPR=3937;RUN=1;SAF=3936;SAP=8543.41;SAR=1;SRF=5314;SRP=11542.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:51:32,19:32:1148:19:684:-46.5378,0,-88.2773	0/1:73:32,41:32:1148:41:1468:-110.441,0,-81.6546	0/1:19:11,7:11:396:7:252:-17.3817,0,-30.3417	0/1:39:22,17:22:773:17:612:-43.6733,0,-58.1493	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	0/1:62:51,11:51:1828:11:396:-17.3189,0,-146.137	0/1:82:36,46:36:1292:46:1636:-122.844,0,-91.8993	1/1:48:1,47:1:36:47:1684:-148.249,-10.8512,0	0/1:293:262,31:262:9396:31:1115:-12.4599,0,-757.398	1/1:102:0,102:0:0:102:3652:-328.884,-30.7051,0	0/1:86:40,46:40:1431:46:1635:-121.549,0,-103.198	1/1:106:0,106:0:0:106:3807:-342.827,-31.9092,0	1/1:88:0,88:0:0:88:3168:-285.343,-26.4906,0	1/1:76:0,76:0:0:76:2710:-244.143,-22.8783,0	0/1:86:27,59:27:964:59:2097:-163.11,0,-61.1882	0/1:57:20,37:20:720:37:1317:-101.671,0,-47.9701	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:56:0,56:0:0:56:1971:-177.432,-16.8577,0	0/1:73:40,33:40:1436:33:1184:-84.8931,0,-107.562	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:30:14,16:14:500:16:572:-42.7825,0,-36.3053	0/1:37:7,30:7:252:30:1076:-86.0147,0,-11.8908	1/1:48:0,48:0:0:48:1701:-153.374,-14.4494,0	0/1:137:99,38:99:3536:38:1360:-81.4595,0,-277.209	0/1:144:71,73:71:2548:73:2578:-188.919,0,-186.177	0/1:31:9,22:9:320:22:792:-62.2737,0,-19.8104	0/1:105:65,40:65:2332:40:1425:-96.9373,0,-178.531	0/1:29:3,26:3:108:26:928:-75.1084,0,-1.3453	1/1:33:0,33:0:0:33:1165:-105.155,-9.93399,0	0/0:252:247,5:247:8796:5:165:0,-60.686,-776.455	0/0:276:270,6:270:9684:6:216:0,-63.2984,-851.722	0/0:394:393,1:393:14072:1:36:0,-115.008,-1262.54	0/0:443:443,0:443:15826:0:0:0,-133.356,-1424.03	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:245:0,245:0:0:245:8781:-790.276,-73.7524,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:243:199,44:199:7126:44:1568:-68.2613,0,-568.246	.:.:.:.:.:.:.:.	0/1:84:55,29:55:1972:29:1036:-68.2674,0,-152.467	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:49:0,49:0:0:49:1746:-157.423,-14.7505,0	1/1:95:0,95:0:0:95:3397:-305.944,-28.5979,0	1/1:86:0,86:0:0:86:3058:-275.449,-25.8886,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	0/1:72:39,33:39:1392:33:1161:-83.1206,0,-103.905	1/1:64:0,64:0:0:64:2277:-205.191,-19.2659,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:60:43,17:43:1548:17:612:-37.3516,0,-121.551	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	0/0:318:308,10:308:11012:10:352:0,-63.7099,-958.957	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	1/1:18:0,18:0:0:18:624:-56.4814,-5.41854,0	0/0:161:161,0:161:5730:0:0:0,-48.4658,-515.817	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:43:29,14:29:1040:14:504:-32.7538,0,-80.9701	1/1:150:0,150:0:0:150:5378:-484.15,-45.1545,0	0/0:189:186,3:186:6672:3:108:0,-46.8195,-590.48	1/1:35:3,32:3:108:32:1152:-93.915,-0.46088,0	0/1:49:34,15:34:1220:15:536:-33.8243,0,-95.3563	0/1:75:37,38:37:1324:38:1368:-100.844,0,-96.8848	0/1:40:20,20:20:720:20:720:-53.0876,0,-53.0876	1/1:76:0,76:0:0:76:2709:-244.053,-22.8783,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:245:218,27:218:7804:27:948:-11.8801,0,-628.637	0/1:44:21,23:21:756:23:809:-59.883,0,-55.1219	0/1:95:30,65:30:1067:65:2322:-180.633,0,-67.7434	0/0:238:235,3:235:8413:3:96:0,-62.6885,-748.215	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:62:35,27:35:1260:27:938:-66.0654,0,-95.0416	0/1:81:70,11:70:2492:11:396:-11.5993,0,-200.15	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:65:42,23:42:1500:23:828:-55.2772,0,-115.728	1/1:57:0,57:0:0:57:2037:-183.6,-17.1587,0	0/0:273:273,0:273:9732:0:0:0,-82.1812,-875.832	0/1:49:24,24:24:864:24:860:-62.9794,0,-63.3401	0/1:55:27,28:27:968:28:1000:-73.7587,0,-70.8807	0/1:138:77,61:77:2752:61:2169:-153.933,0,-206.38	0/1:55:32,22:32:1139:22:788:-54.7727,0,-86.3483	0/1:67:30,37:30:1071:37:1332:-100.013,0,-76.5042	1/1:100:0,100:0:0:100:3588:-323.126,-30.103,0	1/1:164:5,159:5:180:159:5708:-497.284,-32.8169,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:80:28,52:28:1004:52:1864:-143.957,0,-66.5935	0/1:80:39,41:39:1396:41:1445:-106.26,0,-101.857	0/0:370:338,32:338:12132:32:1152:0,-7.39095,-987.732	0/1:510:435,75:435:15551:75:2685:-88.3698,0,-1245.77	0/1:81:44,37:44:1580:37:1328:-95.4388,0,-118.108	1/1:36:0,36:0:0:36:1283:-115.773,-10.8371,0	1/1:149:1,148:1:36:148:5304:-473.896,-41.2552,0
chr11	30626965	.	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chr11	30627389	.	T	G	149995	PASS	AB=0.507166;ABP=5.18889;AC=140;AF=0.744681;AN=188;AO=7567;CIGAR=1X;DP=9988;DPB=9988;DPRA=0;EPP=16434.5;EPPR=5260.15;GTI=3;LEN=1;MEANALT=1;MQM=40.5224;MQMR=59.5832;NS=94;NUMALT=1;ODDS=0.28321;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=271082;QR=86403;RO=2421;RPL=7567;RPP=16434.5;RPPR=5260.15;RPR=0;RUN=1;SAF=0;SAP=16434.5;SAR=7567;SRF=0;SRP=5260.15;SRR=2421;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1188:-99.6841,-9.93399,0	1/1:124:0,124:0:0:124:4437:-373.898,-37.3277,0	0/1:125:59,66:59:2124:66:2376:-157.178,0,-153.599	0/1:243:134,109:134:4816:109:3912:-267.377,0,-360.336	0/1:30:14,16:14:477:16:576:-40.3476,0,-34.2204	0/1:27:13,14:13:468:14:504:-34.8947,0,-34.3236	1/1:99:0,99:0:0:99:3552:-308.347,-29.802,0	0/1:93:47,46:47:1665:46:1637:-108.244,0,-122.123	0/1:144:64,80:64:2300:80:2872:-198.274,0,-163.613	1/1:121:0,121:0:0:121:4348:-377.915,-36.4246,0	0/1:62:33,29:33:1188:29:1032:-71.0118,0,-88.5554	1/1:107:0,107:0:0:107:3834:-321.484,-32.2102,0	0/1:94:49,45:49:1745:45:1607:-106.59,0,-129.035	1/1:50:0,50:0:0:50:1790:-153.78,-15.0515,0	1/1:96:0,96:0:0:96:3448:-301.311,-28.8989,0	1/1:67:0,67:0:0:67:2408:-205.347,-20.169,0	0/1:39:20,19:20:720:19:684:-46.0075,0,-53.3804	0/1:28:17,11:17:612:11:396:-25.5499,0,-46.9764	1/1:23:0,23:0:0:23:828:-69.274,-6.92369,0	1/1:301:0,301:0:0:301:10780:-938.632,-90.61,0	0/1:197:110,87:110:3922:87:3104:-206.38,0,-293.818	1/1:100:0,100:0:0:100:3592:-316.265,-30.103,0	0/1:211:100,111:100:3558:111:3980:-281.929,0,-256.902	1/1:99:3,96:3:108:96:3452:-286.168,-19.7268,0	1/1:76:0,76:0:0:76:2732:-234.375,-22.8783,0	0/1:220:109,111:109:3924:111:3950:-280.279,0,-286.614	0/1:269:148,121:148:5282:121:4325:-290.897,0,-394.025	0/1:36:18,18:18:629:18:648:-45.4711,0,-46.0967	0/1:307:152,155:152:5445:155:5560:-397.56,0,-397.754	1/1:170:5,165:5:165:165:5904:-489.794,-36.0015,0	1/1:188:0,188:0:0:188:6737:-584.725,-56.5936,0	0/1:4:3,1:3:108:1:36:-2.25037,0,-8.86261	0/1:8:1,7:1:36:7:252:-19.0438,0,-1.19003	1/1:1:0,1:0:0:1:36:-3.3876,-0.30103,0	0/1:12:4,8:4:144:8:288:-20.8132,0,-9.70126	1/1:9:0,9:0:0:9:320:-27.5188,-2.70927,0	1/1:234:1,233:1:36:233:8368:-732.898,-66.8427,0	1/1:112:0,112:0:0:112:3999:-342.564,-33.7154,0	0/1:37:13,24:13:438:24:860:-60.6163,0,-28.563	1/1:2:0,2:0:0:2:72:-5.19878,-0.60206,0	0/1:146:70,76:70:2467:76:2736:-190.864,0,-178.312	1/1:30:0,30:0:0:30:1080:-91.536,-9.0309,0	1/1:124:0,124:0:0:124:4449:-378.711,-37.3277,0	1/1:78:0,78:0:0:78:2804:-244.586,-23.4803,0	1/1:67:0,67:0:0:67:2408:-210.506,-20.169,0	1/1:118:0,118:0:0:118:4227:-372.987,-35.5215,0	0/1:101:46,55:46:1637:55:1963:-133.482,0,-117.204	1/1:213:0,213:0:0:213:7621:-663.032,-64.1194,0	1/1:102:0,102:0:0:102:3656:-319.272,-30.7051,0	0/1:148:70,78:70:2478:78:2804:-199.688,0,-178.713	1/1:165:0,165:0:0:165:5928:-523.322,-49.67,0	1/1:14:0,14:0:0:14:485:-42.8966,-4.21442,0	1/1:144:0,144:0:0:144:5156:-431.49,-43.3483,0	1/1:86:0,86:0:0:86:3086:-272.169,-25.8886,0	0/1:7:1,6:1:36:6:216:-16.4434,0,-1.49106	1/1:208:0,208:0:0:208:7441:-639.666,-62.6142,0	1/1:59:0,59:0:0:59:2104:-184.084,-17.7608,0	1/1:3:0,3:0:0:3:108:-9.90114,-0.90309,0	1/1:23:0,23:0:0:23:828:-73.5211,-6.92369,0	0/1:105:36,69:36:1292:69:2464:-180.747,0,-84.9687	1/1:86:1,85:1:36:85:3041:-262.903,-22.2903,0	0/1:13:2,11:2:72:11:396:-31.1136,0,-2.92333	0/1:267:135,132:135:4844:132:4722:-334.992,0,-355.687	0/1:207:108,99:108:3796:99:3546:-246.761,0,-279.421	0/1:106:49,57:49:1730:57:2044:-143.738,0,-124.033	0/1:84:33,51:33:1188:51:1828:-132.782,0,-81.9397	1/1:185:3,182:3:108:182:6515:-557.571,-45.6226,0	1/1:245:1,244:1:36:244:8756:-758.877,-70.1541,0	0/1:45:21,24:21:741:24:860:-61.0678,0,-53.456	0/1:30:16,14:16:576:14:504:-33.2397,0,-43.1441	0/1:32:21,11:21:737:11:396:-25.7283,0,-57.0144	0/1:37:13,24:13:468:24:845:-63.2862,0,-31.3192	1/1:162:0,162:0:0:162:5771:-486.391,-48.7669,0	0/1:110:54,56:54:1925:56:2016:-137.52,0,-140.299	0/1:176:97,79:97:3484:79:2824:-187.429,0,-260.554	1/1:204:0,204:0:0:204:7308:-636.869,-61.4101,0	0/1:60:29,31:29:1044:31:1112:-76.2698,0,-76.2025	1/1:183:0,183:0:0:183:6537:-550.429,-55.0885,0	0/1:16:12,4:12:417:4:144:-7.71764,0,-33.0437	0/1:118:61,57:61:2188:57:2036:-138.246,0,-161.65	0/1:153:56,97:56:1993:97:3484:-246.63,0,-133.061	0/1:216:124,92:124:4437:92:3296:-221.683,0,-333.847	0/1:53:18,35:18:648:35:1256:-94.4201,0,-42.6949	0/1:75:33,42:33:1173:42:1500:-108.606,0,-83.2983	1/1:64:0,64:0:0:64:2285:-198.598,-19.2659,0	1/1:170:0,170:0:0:170:6077:-529.148,-51.1751,0	1/1:22:0,22:0:0:22:792:-66.4082,-6.62266,0	0/1:82:34,48:34:1209:48:1720:-119.593,0,-84.3888	0/1:90:47,43:47:1692:43:1540:-102.762,0,-125.465	0/1:29:13,16:13:468:16:557:-39.7373,0,-33.7298	0/1:79:27,52:27:972:52:1868:-136.32,0,-64.0119	0/1:113:73,40:73:2601:40:1440:-92.3272,0,-200.287	1/1:205:0,205:0:0:205:7341:-638.757,-61.7112,0	1/1:132:0,132:0:0:132:4737:-410.785,-39.736,0
chr11	30627463	.	A	T	68123.7	PASS	AB=0.487819;ABP=11.7388;AC=50;AF=0.265957;AN=188;AO=3328;CIGAR=1X;DP=12657;DPB=12657;DPRA=1.17457;EPP=7229.67;EPPR=20243.3;GTI=1;LEN=1;MEANALT=1.06897;MQM=53.3278;MQMR=59.5734;NS=94;NUMALT=1;ODDS=3.76043;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=117310;QR=332796;RO=9321;RPL=674;RPP=2561.02;RPPR=8949.54;RPR=2654;RUN=1;SAF=674;SAP=2561.02;SAR=2654;SRF=1562;SRP=8949.54;SRR=7759;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.673	0/0:185:184,0:184:6551:0:0:0,-55.3895,-589.169	0/1:142:67,75:67:2372:75:2651:-194.284,0,-170.905	0/1:167:83,83:83:2967:83:2915:-209.708,0,-216.922	0/1:73:37,36:37:1332:36:1276:-92.5295,0,-98.172	0/1:36:17,19:17:593:19:676:-50.0641,0,-42.8502	0/0:59:59,0:59:2081:0:0:0,-17.7608,-187.496	0/1:213:115,98:115:4108:98:3434:-242.89,0,-305.481	0/1:80:58,20:58:2067:20:700:-39.0758,0,-162.269	0/0:123:123,0:123:4385:0:0:0,-37.0267,-394.75	0/1:51:23,28:23:793:28:992:-72.6628,0,-56.3201	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.18	0/1:61:34,27:34:1224:27:951:-67.04,0,-92.0274	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.372	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.831	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.586	0/1:61:30,31:30:1071:31:1108:-81.1879,0,-78.2384	0/1:41:19,22:19:680:22:788:-58.6234,0,-49.1561	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.474	0/0:265:265,0:265:9469:0:0:0,-79.7729,-852.08	0/1:214:110,104:110:3902:104:3573:-256.238,0,-286.89	0/0:351:350,1:350:12538:1:36:0,-102.063,-1124.63	0/1:65:44,21:44:1567:21:730:-45.7216,0,-121.736	0/0:153:151,2:151:5390:2:72:0,-39.2381,-478.358	0/0:73:72,1:72:2584:1:36:0,-18.386,-229.154	0/1:977:486,491:486:17439:491:17417:-1268.25,0,-1274.99	0/1:294:165,129:165:5899:129:4513:-316.312,0,-441.876	0/1:46:31,15:31:1116:15:536:-34.6093,0,-86.9043	0/1:901:445,454:445:15884:454:16056:-1171.55,0,-1157.88	0/0:130:126,4:126:4511:4:140:0,-26.2178,-392.796	0/0:170:162,8:162:5740:8:280:0,-25.9499,-491.377	0/1:6:3,3:3:108:3:108:-8.24366,0,-8.26899	0/1:12:3,9:3:108:9:312:-24.7436,0,-6.46281	0/1:6:2,4:2:72:4:144:-11.4821,0,-5.03054	0/1:7:2,5:2:63:5:172:-13.5324,0,-3.87594	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:385:385,0:385:13808:0:0:0,-115.897,-1242.4	0/0:295:295,0:295:10540:0:0:0,-88.8038,-948.304	0/1:54:26,28:26:928:28:983:-72.18,0,-67.5803	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:128:59,69:59:2112:69:2424:-178.841,0,-151.735	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.466	0/0:168:168,0:168:5984:0:0:0,-50.573,-538.487	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.864	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.337	0/0:233:233,0:233:8344:0:0:0,-70.14,-750.91	0/1:127:75,52:75:2675:52:1840:-127.209,0,-202.705	0/0:99:98,1:98:3495:1:36:0,-26.2155,-310.883	0/0:106:106,0:106:3775:0:0:0,-31.9092,-339.936	0/1:210:99,111:99:3552:111:3879:-284.77,0,-256.428	0/0:347:346,1:346:12391:1:36:0,-100.871,-1111.4	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0182	0/0:521:521,0:521:18563:0:0:0,-156.837,-1669.82	0/0:69:69,0:69:2454:0:0:0,-20.7711,-221.093	0/1:6:4,2:4:140:2:68:-4.64241,0,-11.1384	0/0:158:157,0:157:5618:0:0:0,-47.2617,-505.217	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.9943	0/1:26:14,12:14:500:12:432:-31.3759,0,-37.5094	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.788	0/1:74:38,36:38:1352:36:1257:-90.6521,0,-99.6526	0/0:102:101,1:101:3607:1:27:0,-28.0068,-322.089	1/1:4:0,4:0:0:4:144:-13.2518,-1.20412,0	0/1:562:319,243:319:11447:243:8632:-607.014,0,-860.825	0/1:254:121,133:121:4321:133:4706:-344.285,0,-312.577	0/1:84:35,49:35:1256:49:1723:-129.628,0,-88.0226	0/1:97:45,52:45:1601:52:1815:-133.623,0,-115.156	0/0:229:229,0:229:8112:0:0:0,-68.9359,-729.514	0/0:88:88,0:88:3143:0:0:0,-26.4906,-283.088	0/1:27:11,16:11:388:16:568:-42.8699,0,-27.1296	0/1:101:61,40:61:2164:40:1391:-94.8779,0,-164.592	0/1:128:72,56:72:2579:56:1996:-141.101,0,-193.822	0/1:13:10,3:10:356:3:108:-6.12876,0,-28.4679	0/0:102:102,0:102:3644:0:0:0,-30.7051,-327.752	0/1:53:30,23:30:1071:23:798:-55.4443,0,-80.746	0/1:239:119,120:119:4238:120:4215:-305.272,0,-309.108	0/0:246:246,0:246:8764:0:0:0,-74.0534,-788.658	0/1:147:64,83:64:2280:83:2898:-216.174,0,-161.161	0/0:180:180,0:180:6438:0:0:0,-54.1854,-578.935	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:206:97,109:97:3470:109:3841:-282.407,0,-250.446	0/1:135:64,71:64:2292:71:2480:-181.679,0,-165.878	0/1:252:135,117:135:4823:117:4116:-291.581,0,-358.078	0/1:78:34,43:34:1207:43:1528:-113.757,0,-85.3974	0/1:52:34,18:34:1212:18:644:-42.4537,0,-93.7221	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.547	0/0:112:112,0:112:3938:0:0:0,-33.7154,-354.454	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.542	0/1:62:34,28:34:1216:28:992:-70.6204,0,-91.069	0/1:51:22,29:22:788:29:1012:-75.7956,0,-55.8852	0/1:36:16,20:16:568:20:708:-53.05,0,-40.6093	0/1:55:29,26:29:1021:26:912:-65.656,0,-75.6152	0/1:63:22,41:22:771:41:1449:-111.256,0,-50.7063	0/0:212:212,0:212:7531:0:0:0,-63.8184,-677.592	0/0:79:78,1:78:2768:1:36:0,-20.1949,-245.762
chr11	30636568	.	T	C	157045	PASS	AB=0.551379;ABP=124.396;AC=138;AF=0.734043;AN=188;AO=8542;CIGAR=1X;DP=10956;DPB=10956;DPRA=117.796;EPP=18447.6;EPPR=5210.23;GTI=3;LEN=1;MEANALT=1.04301;MQM=37.9504;MQMR=55.4631;NS=94;NUMALT=1;ODDS=2.30525;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=304760;QR=86104;RO=2410;RPL=8530;RPP=18447.6;RPPR=5210.23;RPR=12;RUN=1;SAF=8542;SAP=18551.7;SAR=0;SRF=2410;SRP=5236.26;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:61:0,61:0:0:61:2165:-165.726,-18.3628,0	1/1:153:0,153:0:0:153:5464:-417.823,-46.0576,0	0/1:116:60,56:60:2139:56:1994:-116.19,0,-156.785	0/1:230:123,107:123:4386:107:3832:-251.524,0,-322.766	0/1:56:27,29:27:968:29:1044:-66.8919,0,-70.2564	0/1:89:39,50:39:1396:50:1783:-106.403,0,-97.366	1/1:187:0,187:0:0:187:6681:-558.682,-56.2926,0	0/1:188:97,91:97:3460:91:3255:-188.474,0,-248.597	0/1:159:66,93:66:2351:93:3286:-204.632,0,-161.44	1/1:220:0,220:0:0:220:7853:-651.861,-66.2266,0	0/1:21:10,11:10:360:11:396:-27.0489,0,-25.8607	1/1:60:0,60:0:0:60:2099:-161.2,-18.0618,0	0/1:63:28,35:28:1000:35:1230:-75.3499,0,-70.8092	1/1:59:0,58:0:0:58:2084:-165.739,-17.4597,0	1/1:65:0,65:0:0:65:2316:-193.792,-19.567,0	1/1:37:0,37:0:0:37:1296:-103.66,-11.1381,0	0/1:59:30,29:30:1072:29:1040:-61.3753,0,-78.4553	0/1:58:20,38:20:703:38:1366:-86.9934,0,-45.3427	1/1:27:0,27:0:0:27:968:-74.3236,-8.12781,0	1/1:238:0,238:0:0:238:8461:-707.329,-71.6451,0	0/1:187:75,112:75:2696:112:4007:-262.276,0,-184.093	1/1:171:0,171:0:0:171:6097:-540.583,-51.4761,0	0/1:97:39,58:39:1392:58:2058:-143.483,0,-95.6209	1/1:169:10,159:10:360:159:5687:-419.787,-18.5035,0	1/1:125:1,124:1:36:124:4433:-348.483,-34.3826,0	0/1:501:202,298:202:7218:298:10645:-796.681,0,-494.417	0/1:245:104,141:104:3728:141:5028:-328.34,0,-260.845	0/1:38:14,24:14:495:24:851:-57.2341,0,-32.8806	0/1:291:101,190:101:3599:190:6801:-518.797,0,-235.345	1/1:213:13,200:13:459:200:7126:-527.006,-22.9688,0	1/1:175:3,172:3:108:172:6151:-504.232,-42.6051,0	1/1:7:0,7:0:0:7:252:-20.4008,-2.10721,0	0/1:11:4,7:4:144:7:252:-16.9678,0,-9.49933	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.57877	0/1:13:4,9:4:140:9:324:-21.1338,0,-8.96976	1/1:1:0,1:0:0:1:36:-3.05454,-0.30103,0	1/1:193:0,193:0:0:193:6921:-616.153,-58.0988,0	1/1:293:0,293:0:0:293:10477:-834.274,-88.2018,0	0/1:34:14,20:14:504:20:716:-44.9114,0,-34.7398	1/1:6:0,6:0:0:6:216:-17.5319,-1.80618,0	0/1:137:61,76:61:2163:76:2701:-174.516,0,-151.1	1/1:27:0,27:0:0:27:972:-77.1295,-8.12781,0	1/1:126:0,126:0:0:126:4502:-357.683,-37.9298,0	1/1:85:0,85:0:0:85:3037:-253.927,-25.5876,0	1/1:72:0,72:0:0:72:2561:-213.164,-21.6742,0	1/1:208:0,208:0:0:208:7405:-658.224,-62.6142,0	0/1:162:65,97:65:2323:97:3475:-217.337,0,-156.287	1/1:258:0,257:0:0:257:9202:-768.946,-77.3647,0	1/1:210:0,210:0:0:210:7449:-622.35,-63.2163,0	0/1:176:90,86:90:3219:86:3074:-204.091,0,-234.181	1/1:123:0,123:0:0:123:4397:-392.957,-37.0267,0	1/1:6:0,6:0:0:6:216:-18.4038,-1.80618,0	1/1:116:1,115:1:36:115:4116:-311.592,-31.7958,0	1/1:70:0,70:0:0:70:2503:-223.772,-21.0721,0	0/1:13:9,4:9:320:4:144:-7.4071,0,-25.0796	1/1:106:0,106:0:0:106:3751:-300.472,-31.9092,0	1/1:73:2,71:2:72:71:2533:-205.094,-15.1385,0	0/1:4:1,3:1:36:3:108:-8.85676,0,-2.39415	1/1:22:0,22:0:0:22:788:-70.4979,-6.62266,0	0/1:66:23,43:23:819:43:1535:-102.79,0,-51.6458	1/1:87:1,86:1:36:86:3072:-252.224,-22.5913,0	0/1:5:1,4:1:36:4:144:-10.8756,0,-2.09312	0/1:308:120,187:120:4296:187:6685:-504.012,0,-292.612	0/1:258:137,121:137:4903:121:4322:-284.196,0,-362.628	0/1:69:37,32:37:1328:32:1131:-69.9134,0,-99.0154	0/1:83:37,46:37:1319:46:1656:-113.73,0,-91.261	1/1:388:1,387:1:36:387:13766:-1146.63,-113.201,0	1/1:133:0,133:0:0:133:4742:-393.629,-40.037,0	0/1:7:6,1:6:212:1:36:-1.08041,0,-17.3176	0/1:104:53,51:53:1883:51:1824:-108.531,0,-136.044	0/1:81:34,47:34:1194:47:1686:-125.449,0,-83.3774	0/1:15:8,7:8:284:7:248:-16.6572,0,-21.3771	1/1:110:0,110:0:0:110:3910:-299.176,-33.1133,0	0/1:58:19,39:19:684:39:1390:-88.9272,0,-44.095	0/1:197:100,97:100:3568:97:3460:-217.188,0,-259.228	1/1:233:0,233:0:0:233:8325:-693.592,-70.14,0	0/1:127:66,61:66:2372:61:2192:-129.271,0,-172.808	1/1:167:0,167:0:0:167:5940:-454.956,-50.272,0	0/1:11:8,3:8:279:3:108:-5.24138,0,-21.5332	0/1:128:62,66:62:2216:66:2339:-149.057,0,-159.313	0/1:130:58,72:58:2076:72:2567:-157.494,0,-144.112	0/1:246:107,139:107:3836:139:4947:-335.919,0,-270.247	0/1:125:51,74:51:1817:74:2646:-181.378,0,-125.208	0/1:45:27,18:27:972:18:648:-40.8096,0,-73.7742	1/1:116:0,116:0:0:116:4137:-345.517,-34.9195,0	1/1:158:1,157:1:36:157:5597:-463.271,-43.9645,0	1/1:41:1,40:1:36:40:1440:-106.068,-8.76346,0	0/1:70:29,41:29:1044:41:1471:-91.5046,0,-72.6734	0/1:77:37,40:37:1328:40:1423:-86.1779,0,-95.9926	0/1:13:6,7:6:212:7:248:-16.2236,0,-15.5114	0/1:47:18,29:18:648:29:1036:-68.926,0,-44.4858	0/1:76:46,30:46:1643:30:1072:-67.2523,0,-125.28	1/1:153:0,153:0:0:153:5422:-450.516,-46.0576,0	1/1:113:2,111:2:72:111:3970:-323.319,-27.1797,0
chr11	30641746	.	CTCGCTGC	CTCACTGC,GTCACTGT	201786	PASS	AB=0.550919,0.436324;ABP=107.166,165.892;AC=137,51;AF=0.728723,0.271277;AN=188;AO=7413,2027;CIGAR=3M1X4M,1X2M1X3M1X;DP=9552;DPB=9551.88;DPRA=0,1.00786;EPP=16100.1,4404.58;EPPR=16.0391;GTI=4;LEN=1,8;MEANALT=2.59574,3;MQM=59.9763,59.5146;MQMR=60;NS=94;NUMALT=2;ODDS=0.452207;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=264087,71549;QR=201;RO=6;RPL=0,0;RPP=16100.1,4404.58;RPPR=16.0391;RPR=7413,2027;RUN=1,1;SAF=7413,2027;SAP=16100.1,4404.58;SAR=0,0;SRF=6;SRP=16.0391;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:58:0,57,0:0:0:57,0:2028,0:-182.433,-17.1587,0,-182.433,-17.1587,-182.433	1/1:93:0,92,0:0:0:92,0:3250,0:-292.433,-27.6948,0,-292.433,-27.6948,-292.433	1/2:185:0,102,83:0:0:102,83:3637,2925:-534.802,-238.337,-207.632,-296.819,0,-271.834	1/2:192:0,124,67:0:0:124,67:4433,2383:-555.741,-194.284,-156.956,-361.542,0,-341.373	1/2:52:0,31,19:0:0:31,19:1104,670:-144.532,-54.5474,-45.2155,-89.9791,0,-84.2595	1/2:43:0,18,24:0:0:18,24:648,851:-122.293,-69.4154,-63.9968,-52.9681,0,-45.7434	1/1:115:0,114,0:0:0:114,0:4075,0:-366.577,-34.3174,0,-366.577,-34.3174,-366.577	1/2:115:0,74,39:0:0:74,39:2640,1384:-328.067,-112.847,-90.5708,-215.333,0,-203.593	1/2:122:0,64,56:0:0:64,56:2268,1991:-346.947,-162.271,-143.005,-184.695,0,-167.838	1/1:111:0,111,0:0:0:111,0:3945,0:-355.243,-33.4143,0,-355.243,-33.4143,-355.243	1/2:54:0,22,30:0:0:22,30:792,1046:-149.616,-84.9872,-78.3646,-64.6467,0,-55.6158	1/1:111:0,111,0:0:0:111,0:3971,0:-357.58,-33.4143,0,-357.58,-33.4143,-357.58	1/2:98:0,47,50:0:0:47,50:1684,1773:-281.75,-144.407,-130.259,-137.349,0,-122.298	1/1:46:0,46,0:0:0:46,0:1636,0:-147.529,-13.8474,0,-147.529,-13.8474,-147.529	1/1:69:0,69,0:0:0:69,0:2467,0:-222.239,-20.7711,0,-222.239,-20.7711,-222.239	1/1:42:0,41,0:0:0:41,0:1464,0:-131.696,-12.3422,0,-131.696,-12.3422,-131.696	1/2:23:0,13,10:0:0:13,10:468,355:-67.4616,-29.2723,-25.3589,-38.5463,0,-35.536	1/2:46:0,24,22:0:0:24,22:864,773:-133.734,-63.2317,-56.007,-70.8578,0,-64.2352	1/1:37:0,37,0:0:0:37,0:1320,0:-119.102,-11.1381,0,-119.102,-11.1381,-119.102	1/1:369:0,368,1:0:0:368,1:13077,36:-1176.38,-110.779,0,-1173.45,-107.482,-1173.15	1/2:149:0,79,68:0:0:79,68:2804,2391:-422.946,-194.478,-170.697,-228.48,0,-208.01	1/1:169:0,164,0:0:0:164,0:5834,0:-524.814,-49.3689,0,-524.814,-49.3689,-524.814	1/2:88:0,59,27:0:0:59,27:2093,944:-247.311,-76.7848,-59.0241,-170.518,0,-162.39	1/2:62:0,54,8:0:0:54,8:1940,288:-182.12,-23.8592,-7.60355,-158.621,0,-156.212	1/1:146:0,145,0:0:0:145,0:5177,0:-465.71,-43.6494,0,-465.71,-43.6494,-465.71	1/2:201:1,123,73:1:36:123,73:4381,2569:-562.958,-206.175,-172.086,-354.147,0,-335.109	1/2:287:0,162,121:0:0:162,121:5752,4248:-814.381,-345.705,-296.939,-468.719,0,-432.295	1/2:47:0,24,23:0:0:24,23:852,817:-136.345,-66.9242,-59.6995,-69.7757,0,-62.852	1/2:262:0,159,97:0:0:159,97:5650,3440:-740.484,-280.081,-232.217,-460.401,0,-431.202	1/1:131:0,128,2:0:0:128,2:4527,72:-407.258,-38.5318,0,-401.383,-32.6171,-400.781	1/1:121:0,118,0:0:0:118,0:4200,0:-377.853,-35.5215,0,-377.853,-35.5215,-377.853	1/2:7:0,5,1:0:0:5,1:180,36:-17.6872,-2.97399,-1.46884,-14.748,0,-14.447	1/2:30:0,22,7:0:0:22,7:784,250:-84.2806,-20.3764,-13.7537,-63.9016,0,-61.7944	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:13:0,9,4:0:0:9,4:324,142:-38.3617,-11.9214,-9.21213,-26.7966,0,-25.5925	1/1:30:0,30,0:0:0:30,0:1072,0:-96.7925,-9.0309,0,-96.7925,-9.0309,-96.7925	1/1:203:0,200,0:0:0:200,0:7140,0:-642.337,-60.206,0,-642.337,-60.206,-642.337	1/1:127:0,125,0:0:0:125,0:4425,0:-398.093,-37.6288,0,-398.093,-37.6288,-398.093	1/2:35:0,18,16:0:0:18,16:644,566:-98.569,-46.0508,-40.6323,-52.5596,0,-47.7431	1/1:13:0,12,0:0:0:12,0:428,0:-38.5268,-3.61236,0,-38.5268,-3.61236,-38.5268	1/2:142:0,75,66:0:0:75,66:2675,2331:-407.888,-189.824,-167.246,-218.059,0,-198.191	1/1:42:0,42,0:0:0:42,0:1500,0:-135.295,-12.6433,0,-135.295,-12.6433,-135.295	1/1:118:0,115,0:0:0:115,0:4089,0:-367.837,-34.6185,0,-367.837,-34.6185,-367.837	1/1:58:0,58,0:0:0:58,0:2076,0:-187.093,-17.4597,0,-187.093,-17.4597,-187.093	1/1:67:1,64,0:1:33:64,0:2296,0:-203.636,-16.5794,0,-203.937,-19.2659,-206.605	1/1:152:0,147,2:0:0:147,2:5264,72:-473.534,-44.2514,0,-467.659,-38.3726,-467.057	1/2:223:0,144,75:0:0:144,75:5121,2627:-631.069,-213.734,-170.385,-417.353,0,-394.776	1/1:182:0,178,1:0:0:178,1:6311,36:-567.771,-53.5833,0,-564.834,-50.6301,-564.533	1/1:124:0,124,0:0:0:124,0:4440,0:-399.771,-37.3277,0,-399.771,-37.3277,-399.771	1/2:86:1,48,35:1:30:48,35:1712,1240:-237.912,-98.6513,-86.5991,-137.203,0,-129.064	1/1:165:0,164,0:0:0:164,0:5837,0:-525.118,-49.3689,0,-525.118,-49.3689,-525.118	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	1/1:272:0,271,0:0:0:271,0:9658,0:-868.961,-81.5791,0,-868.961,-81.5791,-868.961	1/1:67:0,66,0:0:0:66,0:2319,0:-208.606,-19.868,0,-208.606,-19.868,-208.606	1/2:14:0,9,5:0:0:9,5:320,168:-40.0355,-13.9453,-11.236,-26.4331,0,-24.9279	1/1:173:0,171,1:0:0:171,1:6058,35:-544.971,-51.4761,0,-542.123,-48.6334,-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chr11	30651678	.	T	C	247592	PASS	AB=0.46917;ABP=62.5927;AC=138;AF=0.734043;AN=188;AO=9341;CIGAR=1X;DP=13193;DPB=13193;DPRA=47.276;EPP=9575.5;EPPR=6.99416;GTI=3;LEN=1;MEANALT=1.06452;MQM=51.1082;MQMR=59.8911;NS=94;NUMALT=1;ODDS=0.456248;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=324109;QR=136974;RO=3846;RPL=3550;RPP=1170.48;RPPR=5485.02;RPR=5791;RUN=1;SAF=2088;SAP=6204.58;SAR=7253;SRF=1600;SRP=238.629;SRR=2246;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1914:-168.431,-16.5567,0	1/1:206:1,205:1:36:205:7195:-634.342,-58.4139,0	0/1:200:109,91:109:3877:91:3196:-223.251,0,-288.891	0/1:340:177,163:177:6308:163:5639:-401.357,0,-465.049	0/1:103:55,48:55:1963:48:1627:-115.122,0,-145.082	0/1:101:56,44:56:2008:44:1542:-105.346,0,-150.531	1/1:234:1,233:1:36:233:8053:-716.567,-66.8427,0	0/1:229:116,113:116:4118:113:3931:-279.984,0,-301.871	0/1:185:100,85:100:3557:85:2974:-209.236,0,-264.644	1/1:107:0,107:0:0:107:3674:-327.908,-32.2102,0	0/1:79:45,34:45:1608:34:1157:-79.0373,0,-121.038	1/1:105:0,105:0:0:105:3600:-319.365,-31.6082,0	0/1:96:63,33:63:2252:33:1105:-69.8749,0,-174.044	1/1:118:0,118:0:0:118:4100:-365.419,-35.5215,0	1/1:109:0,109:0:0:109:3749:-335.243,-32.8123,0	1/1:80:0,80:0:0:80:2773:-247.294,-24.0824,0	0/1:108:65,43:65:2324:43:1487:-99.3985,0,-176.909	0/1:105:61,44:61:2179:44:1528:-103.264,0,-164.767	1/1:64:1,63:1:32:63:2186:-191.642,-16.0666,0	1/1:330:0,329:0:0:329:11449:-1023.08,-99.0389,0	0/1:242:134,108:134:4771:108:3748:-262.179,0,-356.529	1/1:69:0,69:0:0:69:2430:-217.547,-20.7711,0	0/1:166:86,80:86:3063:80:2805:-200.925,0,-225.928	1/1:123:3,119:3:108:119:4111:-354.516,-27.0096,0	1/1:118:0,118:0:0:118:4065:-364.081,-35.5215,0	0/1:373:187,186:187:6671:186:6490:-467.759,0,-488.186	0/1:275:140,135:140:4987:135:4735:-338.745,0,-366.197	0/1:61:40,21:40:1427:21:696:-43.2208,0,-110.364	0/1:320:136,184:136:4849:184:6376:-474.64,0,-340.234	1/1:137:4,133:4:144:133:4570:-393.663,-27.9275,0	1/1:304:1,303:1:36:303:10568:-940.345,-87.9148,0	1/1:3:0,3:0:0:3:104:-9.65644,-0.90309,0	0/1:16:4,12:4:144:12:400:-31.2976,0,-8.49714	0/1:7:3,4:3:108:4:135:-10.1151,0,-7.96796	0/1:5:2,3:2:72:3:108:-8.40679,0,-5.33157	1/1:11:0,11:0:0:11:392:-34.7493,-3.31133,0	1/1:249:1,248:1:36:248:8596:-764.587,-71.3582,0	1/1:157:0,157:0:0:157:5459:-487.319,-47.2617,0	0/1:76:48,28:48:1696:28:955:-62.0184,0,-130.016	1/1:8:0,8:0:0:8:284:-25.7764,-2.40824,0	0/1:262:141,121:141:4990:121:4093:-284.151,0,-370.12	1/1:40:0,40:0:0:40:1376:-123.247,-12.0412,0	1/1:200:0,200:0:0:200:6970:-618.374,-60.206,0	1/1:102:0,102:0:0:102:3574:-320.078,-30.7051,0	1/1:83:0,83:0:0:83:2849:-254.389,-24.9855,0	1/1:99:0,99:0:0:99:3420:-306.652,-29.802,0	0/1:220:114,106:114:4033:106:3693:-262.409,0,-296.931	1/1:186:0,186:0:0:186:6437:-574.76,-55.9916,0	1/1:121:0,121:0:0:121:4185:-374.526,-36.4246,0	0/1:214:119,95:119:4264:95:3289:-229.343,0,-319.514	1/1:190:0,190:0:0:190:6623:-592.928,-57.1957,0	1/1:7:0,7:0:0:7:252:-22.9078,-2.10721,0	1/1:194:0,194:0:0:194:6776:-600.848,-58.3998,0	1/1:82:0,82:0:0:82:2875:-256.405,-24.6845,0	0/1:6:2,4:2:72:4:144:-11.4111,0,-5.03054	1/1:193:2,191:2:72:191:6632:-583.122,-51.2621,0	1/1:64:0,64:0:0:64:2160:-192.637,-19.2659,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:26:0,26:0:0:26:915:-81.256,-7.82678,0	0/1:139:65,73:65:2320:73:2581:-186.989,0,-167.161	1/1:128:0,128:0:0:128:4439:-397.323,-38.5318,0	0/1:10:3,7:3:108:7:244:-19.2221,0,-7.06487	0/1:179:89,90:89:3180:90:3162:-228.242,0,-232.54	0/1:324:175,149:175:6247:149:5209:-366.4,0,-464.71	0/1:102:51,51:51:1824:51:1799:-129.784,0,-133.736	0/1:84:20,64:20:711:64:2155:-167.545,0,-39.0291	1/1:281:0,281:0:0:281:9857:-880.616,-84.5894,0	1/1:170:0,170:0:0:170:5888:-524.778,-51.1751,0	0/1:42:24,18:24:856:18:637:-44.5081,0,-64.7178	0/1:160:91,69:91:3231:69:2403:-164.147,0,-242.848	0/1:133:81,52:81:2899:52:1785:-119.76,0,-221.108	0/1:33:7,26:7:244:26:910:-70.986,0,-12.3654	1/1:98:0,98:0:0:98:3399:-301.689,-29.5009,0	0/1:92:44,48:44:1572:48:1687:-122.08,0,-113.916	0/1:396:183,213:183:6512:213:7422:-540.879,0,-465.833	1/1:260:0,260:0:0:260:9028:-805.383,-78.2678,0	0/1:132:63,69:63:2197:69:2398:-173.122,0,-158.259	1/1:134:0,134:0:0:134:4630:-409.828,-40.338,0	0/1:10:7,3:7:252:3:99:-6.17596,0,-20.0187	0/1:188:114,72:114:4068:72:2505:-167.086,0,-309.963	0/1:212:120,92:120:4249:92:3240:-223.573,0,-318.774	0/1:426:237,189:237:8440:189:6606:-462.179,0,-631.21	0/1:163:95,68:95:3390:68:2376:-164.198,0,-255.044	0/1:126:67,59:67:2376:59:2056:-146.115,0,-176.166	1/1:145:0,145:0:0:145:4946:-442.674,-43.6494,0	1/1:184:1,183:1:36:183:6284:-558.976,-51.7912,0	1/1:60:0,60:0:0:60:2038:-180.966,-18.0618,0	0/1:115:60,55:60:2156:55:1900:-133.22,0,-159.688	0/1:111:68,43:68:2436:43:1480:-98.6195,0,-186.081	0/1:62:39,23:39:1391:23:809:-53.89,0,-106.824	0/1:91:51,40:51:1802:40:1398:-97.1694,0,-135.067	0/1:98:70,28:70:2496:28:982:-58.631,0,-195.379	1/1:193:0,193:0:0:193:6713:-597.501,-58.0988,0	1/1:146:1,145:1:32:145:4875:-433.274,-40.7511,0
chr11	30672052	.	C	T	37156.2	PASS	AB=0.490443;ABP=6.41379;AC=50;AF=0.265957;AN=188;AO=2124;CIGAR=1X;DP=8197;DPB=8197;DPRA=1.22066;EPP=4240.96;EPPR=12521.3;GTI=2;LEN=1;MEANALT=1.01818;MQM=59.6398;MQMR=59.9674;NS=94;NUMALT=1;ODDS=1.19721;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76124;QR=216802;RO=6069;RPL=2083;RPP=4265.97;RPPR=12529.8;RPR=41;RUN=1;SAF=3;SAP=4589.2;SAR=2121;SRF=1;SRP=13173;SRR=6068;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.872	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.292	0/1:154:76,78:76:2720:78:2800:-205.633,0,-198.685	0/1:184:99,85:99:3540:85:3036:-218.036,0,-263.42	0/1:74:36,38:36:1284:38:1368:-101.135,0,-93.5872	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/1:91:59,32:59:2104:32:1152:-76.5955,0,-162.234	0/1:95:52,43:52:1838:43:1548:-111.015,0,-137.099	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:67:29,38:29:1031:38:1368:-103.246,0,-72.9336	0/0:128:128,0:128:4592:0:0:0,-38.5318,-413.427	0/1:103:54,49:54:1932:49:1760:-127.299,0,-143.15	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.341	0/0:84:84,0:84:3011:0:0:0,-25.2865,-271.22	0/0:64:64,0:64:2268:0:0:0,-19.2659,-204.376	0/1:49:20,29:20:716:29:1044:-79.5162,0,-50.0172	0/1:46:16,30:16:567:30:1080:-83.6577,0,-37.5133	0/0:43:43,0:43:1521:0:0:0,-12.9443,-137.181	0/0:173:172,1:172:6137:1:36:0,-48.4799,-548.829	0/1:137:70,67:70:2504:67:2399:-174.915,0,-184.371	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/1:97:58,39:58:2076:39:1391:-96.2828,0,-157.911	0/0:76:70,6:70:2512:6:216:0,-3.08777,-206.541	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.749	0/1:273:153,120:153:5441:120:4297:-304.719,0,-407.637	0/1:229:124,105:124:4421:105:3752:-268.888,0,-329.122	0/1:35:20,15:20:720:15:532:-37.6467,0,-54.5927	0/1:234:121,113:121:4352:113:4060:-295.093,0,-321.412	0/0:56:52,4:52:1841:4:144:0,-3.54406,-152.655	0/0:126:126,0:126:4493:0:0:0,-37.9298,-404.539	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:15:13,2:13:460:2:72:-2.32127,0,-37.2184	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:210:210,0:210:7494:0:0:0,-63.2163,-674.502	0/0:68:67,0:67:2387:0:0:0,-20.169,-214.727	0/1:64:43,21:43:1544:21:756:-49.0435,0,-119.987	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:172:56,116:56:2007:116:4159:-322.641,0,-129.125	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:156:156,0:156:5559:0:0:0,-46.9607,-500.434	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/0:57:57,0:57:2001:0:0:0,-17.1587,-180.36	0/0:124:124,0:124:4448:0:0:0,-37.3277,-400.489	0/1:111:39,72:39:1400:72:2575:-198.347,0,-92.8711	0/0:147:146,1:146:5204:1:36:0,-40.6531,-464.901	0/0:77:77,0:77:2737:0:0:0,-23.1793,-246.572	0/1:81:33,48:33:1169:48:1720:-130.7,0,-81.1319	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:245:245,0:245:8772:0:0:0,-73.7523,-789.459	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/1:9:7,2:7:243:2:72:-4.12745,0,-19.4982	0/0:93:92,0:92:3296:0:0:0,-27.6948,-296.499	0/0:28:28,0:28:989:0:0:0,-8.42884,-89.3202	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:48:9,39:9:324:39:1391:-111.016,0,-15.0518	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:171:96,75:96:3429:75:2692:-191.025,0,-257.346	0/1:143:63,80:63:2218:80:2860:-214.397,0,-156.834	0/1:37:16,21:16:576:21:756:-57.2245,0,-41.0345	0/1:62:44,18:44:1576:18:648:-39.9833,0,-123.468	0/0:134:130,4:130:4643:4:144:0,-27.0244,-404.719	0/0:188:186,1:186:6642:1:36:0,-53.0542,-594.261	0/1:52:20,32:20:720:32:1133:-86.6149,0,-49.4752	0/1:92:51,41:51:1828:41:1464:-104.345,0,-137.106	0/1:46:24,22:24:864:22:788:-57.3956,0,-64.2352	0/1:18:7,11:7:252:11:396:-30.5077,0,-17.6104	0/0:102:102,0:102:3660:0:0:0,-30.7051,-329.603	0/1:91:46,45:46:1644:45:1612:-117.947,0,-120.855	0/1:155:91,64:91:3253:64:2296:-160.222,0,-246.329	0/0:166:166,0:166:5944:0:0:0,-49.971,-535.049	0/1:120:82,38:82:2912:38:1368:-87.233,0,-226.178	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.079	0/1:9:7,2:7:252:2:57:-2.70404,0,-20.3197	0/1:101:51,50:51:1803:50:1800:-131.876,0,-132.144	0/1:98:50,48:50:1777:48:1717:-125.298,0,-130.71	0/1:154:93,61:93:3328:61:2177:-149.833,0,-253.379	0/1:69:30,39:30:1076:39:1396:-105.163,0,-76.3818	0/1:81:41,40:41:1472:40:1436:-105.152,0,-108.393	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:119:118,1:118:4205:1:36:0,-32.2243,-375.033	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/1:72:33,39:33:1175:39:1392:-103.897,0,-84.3828	0/1:76:30,46:30:1065:46:1652:-126.076,0,-73.2815	0/1:50:25,25:25:883:25:900:-66.2649,0,-64.736	0/1:105:58,47:58:2084:47:1688:-120.594,0,-156.222	0/1:101:34,67:34:1224:67:2412:-186.928,0,-80.063	0/0:144:143,0:143:5107:0:0:0,-43.0473,-459.343	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867
chr11	30691961	.	C	T	119162	PASS	AB=0.491137;ABP=5.78157;AC=136;AF=0.723404;AN=188;AO=5686;CIGAR=1X;DP=7773;DPB=7773;DPRA=28.1413;EPP=12272;EPPR=4526.19;GTI=0;LEN=1;MEANALT=1;MQM=59.9328;MQMR=59.9483;NS=94;NUMALT=1;ODDS=3.25041;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203544;QR=74523;RO=2087;RPL=9;RPP=12272;RPPR=4526.19;RPR=5677;RUN=1;SAF=0;SAP=12350;SAR=5686;SRF=0;SRP=4534.87;SRR=2087;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0	0/1:111:52,59:52:1864:59:2105:-156.303,0,-134.625	0/1:142:67,75:67:2395:75:2677:-198.427,0,-173.06	0/1:58:23,35:23:828:35:1256:-95.8855,0,-57.3844	0/1:33:19,14:19:665:14:504:-35.7641,0,-50.2388	1/1:138:0,138:0:0:138:4951:-445.651,-41.5421,0	0/1:105:51,54:51:1832:54:1940:-142.942,0,-133.553	0/1:66:32,34:32:1152:34:1216:-89.8786,0,-84.1222	1/1:112:1,111:1:36:111:3967:-353.62,-30.1171,0	0/1:95:58,37:58:2048:37:1328:-91.2244,0,-155.214	1/1:129:0,129:0:0:129:4623:-416.215,-38.8329,0	0/1:101:59,42:59:2102:42:1498:-104.708,0,-159.044	1/1:83:0,83:0:0:83:2967:-267.254,-24.9855,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	1/1:87:0,87:0:0:87:3120:-281.021,-26.1896,0	0/1:60:24,36:24:855:36:1287:-98.071,0,-59.2084	0/1:70:37,33:37:1319:33:1173:-84.8043,0,-97.9391	1/1:72:0,72:0:0:72:2579:-232.359,-21.6742,0	1/1:132:0,132:0:0:132:4737:-426.459,-39.736,0	0/1:200:102,98:102:3647:98:3478:-253.006,0,-268.228	1/1:82:1,81:1:36:81:2845:-252.685,-21.0862,0	0/1:68:35,33:35:1256:33:1178:-85.8576,0,-92.2473	1/1:60:2,58:2:72:58:2077:-180.363,-11.2251,0	1/1:38:0,38:0:0:38:1341:-120.988,-11.4391,0	0/1:179:89,90:89:3196:90:3205:-234.788,0,-233.978	0/1:179:102,77:102:3652:77:2752:-194.033,0,-275	0/1:39:20,19:20:716:19:684:-50.1502,0,-53.0275	0/1:206:111,95:111:3965:95:3412:-245.281,0,-295.028	1/1:81:0,81:0:0:81:2903:-261.504,-24.3834,0	1/1:98:0,98:0:0:98:3515:-316.559,-29.5009,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:25:17,8:17:612:8:280:-18.0136,0,-47.8877	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:208:0,208:0:0:208:7476:-672.879,-62.6142,0	1/1:81:0,81:0:0:81:2883:-259.705,-24.3834,0	0/1:91:45,46:45:1611:46:1641:-120.583,0,-117.886	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:76:26,50:26:924:50:1792:-138.677,0,-60.5994	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	1/1:61:0,61:0:0:61:2179:-196.357,-18.3628,0	1/1:96:0,96:0:0:96:3448:-310.514,-28.8989,0	1/1:90:1,89:1:36:89:3196:-284.258,-23.4944,0	1/1:48:0,48:0:0:48:1719:-154.99,-14.4494,0	0/1:87:52,35:52:1864:35:1252:-86.7955,0,-141.85	1/1:64:0,64:0:0:64:2286:-206.002,-19.2659,0	1/1:55:0,55:0:0:55:1976:-178.095,-16.5567,0	0/1:129:66,63:66:2372:63:2247:-163.656,0,-174.905	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:120:0,120:0:0:120:4273:-384.746,-36.1236,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	1/1:137:0,137:0:0:137:4920:-442.949,-41.2411,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:12:0,12:0:0:12:424:-38.4957,-3.61236,0	0/1:72:30,42:30:1061:42:1512:-114.7,0,-74.1252	1/1:138:1,137:1:36:137:4916:-438.994,-37.9465,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:103:50,53:50:1766:53:1896:-139.912,0,-128.216	0/1:117:66,51:66:2364:51:1832:-129.94,0,-177.171	0/1:43:25,18:25:900:18:644:-45.3417,0,-68.3767	0/1:56:31,25:31:1112:25:866:-61.3937,0,-83.5337	1/1:140:2,138:2:72:138:4958:-439.531,-35.3075,0	1/1:90:0,90:0:0:90:3216:-289.663,-27.0927,0	0/1:82:35,47:35:1228:47:1692:-127.882,0,-86.1366	0/1:35:17,18:17:604:18:648:-48.1158,0,-44.1546	0/1:80:33,47:33:1176:47:1677:-127.133,0,-82.0654	0/1:14:9,5:9:320:5:180:-12.3376,0,-24.9279	1/1:73:0,73:0:0:73:2600:-234.234,-21.9752,0	0/1:61:31,30:31:1112:30:1076:-78.79,0,-82.0285	0/1:122:59,63:59:2083:63:2249:-165.946,0,-151.014	1/1:96:1,95:1:36:95:3414:-303.873,-25.3006,0	0/1:42:21,21:21:744:21:752:-55.3548,0,-54.6411	1/1:97:0,97:0:0:97:3476:-313.051,-29.1999,0	0/1:23:15,8:15:540:8:288:-19.3437,0,-42.0128	0/1:90:38,52:38:1364:52:1864:-140.945,0,-95.968	0/1:98:42,56:42:1500:56:2004:-151.102,0,-105.794	0/1:103:48,55:48:1701:55:1976:-147.109,0,-122.368	0/1:85:40,45:40:1432:45:1616:-120.142,0,-103.59	0/1:104:52,52:52:1864:52:1872:-137.452,0,-136.732	1/1:93:0,93:0:0:93:3336:-300.457,-27.9958,0	1/1:178:3,175:3:108:175:6252:-552.609,-43.5082,0	1/1:45:0,45:0:0:45:1599:-144.198,-13.5464,0	0/1:97:43,54:43:1514:54:1939:-145.586,0,-107.352	0/1:96:53,43:53:1892:43:1544:-110.354,0,-141.655	0/1:93:45,48:45:1607:48:1711:-126.278,0,-116.924	0/1:118:56,62:56:2003:62:2228:-165.253,0,-145.021	0/1:165:114,51:114:4073:51:1816:-114.05,0,-317.083	1/1:72:1,71:1:36:71:2537:-224.981,-18.0759,0	1/1:142:1,141:1:36:141:5076:-453.383,-39.148,0
chr11	30743267	.	G	A	19088.3	PASS	AB=0.517024;ABP=16.1704;AC=50;AF=0.265957;AN=188;AO=2737;CIGAR=1X;DP=9978;DPB=9978;DPRA=1.18597;EPP=5946.33;EPPR=15722.3;GTI=1;LEN=1;MEANALT=1.01724;MQM=25.0237;MQMR=36.0141;NS=94;NUMALT=1;ODDS=0.930311;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97712;QR=258747;RO=7239;RPL=0;RPP=5946.33;RPPR=15722.3;RPR=2737;RUN=1;SAF=2737;SAP=5946.33;SAR=0;SRF=7239;SRP=15722.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:82:82,0:82:2917:0:0:0,-24.6845,-241.096	0/0:75:75,0:75:2677:0:0:0,-22.5772,-221.61	0/1:175:63,112:63:2260:112:4009:-195.687,0,-134.236	0/1:271:110,161:110:3940:161:5735:-274.576,0,-242.708	0/1:90:44,46:44:1580:46:1648:-75.2014,0,-102.907	0/1:28:12,16:12:432:16:576:-27.2567,0,-27.5305	0/0:105:105,0:105:3749:0:0:0,-31.6081,-307.846	0/1:207:110,97:110:3929:97:3484:-153.212,0,-260.942	0/1:116:66,50:66:2353:50:1796:-76.2967,0,-158.338	0/0:65:65,0:65:2332:0:0:0,-19.5669,-193.012	0/1:33:15,18:15:540:18:648:-30.1063,0,-34.9327	0/0:110:110,0:110:3944:0:0:0,-33.1133,-325.426	0/1:106:53,53:53:1904:53:1904:-85.9677,0,-125.564	0/0:56:56,0:56:2008:0:0:0,-16.8577,-165.666	0/0:84:84,0:84:2984:0:0:0,-25.2865,-244.514	0/0:88:88,0:88:3160:0:0:0,-26.4906,-260.36	0/1:39:20,19:20:707:19:684:-30.6906,0,-47.1623	0/1:40:17,23:17:612:23:828:-39.2704,0,-38.7638	0/0:26:26,0:26:921:0:0:0,-7.82678,-76.6658	0/0:181:181,0:181:6489:0:0:0,-54.4864,-535.235	0/1:162:76,86:76:2724:86:3047:-140.807,0,-176.268	0/0:161:161,0:161:5761:0:0:0,-48.4658,-476.606	0/1:184:101,83:101:3583:83:2934:-127.966,0,-238.294	0/0:112:104,8:104:3680:8:288:0,-15.7069,-286.531	0/0:98:98,0:98:3490:0:0:0,-29.5009,-287.754	0/1:220:123,97:123:4412:97:3477:-148.92,0,-296.868	0/1:148:81,67:81:2886:67:2404:-104.759,0,-193.6	0/1:36:16,20:16:572:20:716:-33.7726,0,-36.0231	0/1:288:151,137:151:5386:137:4826:-214.537,0,-357.047	0/0:113:105,8:105:3761:8:288:0,-16.008,-291.267	0/0:105:98,7:98:3498:7:248:0,-15.8617,-274.423	1/1:1:0,1:0:0:1:36:-2.46691,-0.30103,0	0/1:4:3,1:3:108:1:36:-1.26279,0,-8.03315	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.23727	0/1:6:2,4:2:72:4:144:-8.09108,0,-4.58031	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.29902	0/0:244:244,0:244:8756:0:0:0,-73.4513,-723.45	0/0:223:223,0:223:7891:0:0:0,-67.1297,-652.054	0/1:53:32,21:32:1148:21:752:-30.8753,0,-79.1664	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.26815	0/1:170:46,124:46:1648:124:4437:-223.794,0,-84.5426	0/0:24:24,0:24:860:0:0:0,-7.22472,-71.3678	0/0:251:248,3:248:8844:3:108:0,-68.6512,-724.458	0/0:65:65,0:65:2336:0:0:0,-19.5669,-192.62	0/0:81:81,0:81:2889:0:0:0,-24.3834,-238.389	0/0:103:103,0:103:3700:0:0:0,-31.0061,-305.968	0/1:151:49,102:49:1764:102:3649:-180.71,0,-100.361	0/0:274:273,0:273:9777:0:0:0,-82.1812,-803.706	0/1:152:94,58:94:3348:58:2084:-83.2214,0,-231.587	0/1:129:50,79:50:1796:79:2844:-136.811,0,-109.733	0/0:136:135,1:135:4832:1:36:0,-38.4732,-396.831	0/0:5:5,0:5:176:0:0:0,-1.50515,-14.9506	0/0:134:134,0:134:4808:0:0:0,-40.338,-392.759	0/0:56:56,0:56:2000:0:0:0,-16.8577,-163.269	0/1:5:1,4:1:36:4:144:-7.6224,0,-1.79387	0/0:194:194,0:194:6838:0:0:0,-58.3998,-565.264	0/0:73:73,0:73:2605:0:0:0,-21.9752,-214.572	0/1:6:1,5:1:36:5:180:-9.45568,0,-1.49284	0/0:11:11,0:11:396:0:0:0,-3.31133,-32.9902	0/1:98:57,41:57:2029:41:1472:-61.7333,0,-137.354	0/0:114:114,0:114:4096:0:0:0,-34.3174,-336.815	0/1:9:4,5:4:144:5:180:-8.6385,0,-9.49712	0/1:209:95,114:95:3390:114:4044:-188.593,0,-217.296	0/1:164:91,73:91:3249:73:2571:-111.277,0,-218.659	0/1:88:57,31:57:2048:31:1108:-42.5002,0,-143.346	0/1:117:52,65:52:1838:65:2340:-109.34,0,-116.787	0/0:227:226,1:226:8105:1:36:0,-65.8669,-666.406	0/0:125:123,2:123:4401:2:72:0,-32.9416,-358.585	0/1:29:18,11:18:648:11:392:-15.8977,0,-43.8582	0/1:84:33,51:33:1188:51:1821:-87.7298,0,-73.0244	0/1:39:25,14:25:896:14:504:-21.264,0,-61.4128	0/1:27:14,13:14:504:13:449:-20.476,0,-33.7698	0/0:117:117,0:117:4173:0:0:0,-35.2205,-346.219	0/1:102:62,40:62:2179:40:1440:-58.1805,0,-149.99	0/1:123:75,48:75:2673:48:1728:-69.7903,0,-183.053	0/0:143:143,0:143:5109:0:0:0,-43.0473,-420.994	0/1:167:69,98:69:2476:98:3475:-166.484,0,-154.721	0/0:133:132,1:132:4714:1:36:0,-37.5701,-385.983	0/0:7:7,0:7:252:0:0:0,-2.10721,-21.3766	0/1:174:73,100:73:2601:100:3570:-169.072,0,-161.789	0/1:178:62,116:62:2213:116:4127:-202.785,0,-130.517	0/1:233:126,107:126:4524:107:3818:-167.457,0,-303.005	0/1:86:49,37:49:1756:37:1316:-56.3411,0,-117.288	0/1:87:45,42:45:1616:42:1478:-66.9133,0,-107.53	0/0:60:60,0:60:2152:0:0:0,-18.0618,-176.803	0/0:171:171,0:171:6125:0:0:0,-51.4761,-505.077	0/0:33:33,0:33:1188:0:0:0,-9.93399,-98.3109	0/1:96:55,41:55:1968:41:1476:-62.3766,0,-133.273	0/1:97:49,48:49:1764:48:1728:-78.3677,0,-116.109	0/1:37:13,24:13:468:24:856:-42.3111,0,-27.7904	0/1:70:33,37:33:1188:37:1313:-60.8196,0,-77.2388	0/1:95:31,64:31:1116:64:2304:-113.743,0,-64.0314	0/0:159:159,0:159:5681:0:0:0,-47.8638,-469.271	0/0:119:117,2:117:4204:2:68:0,-31.1788,-338.28
chr11	30743299	.	A	C,G	164855	PASS	AB=0.485433,0.514181;ABP=12.563,12.0636;AC=138,50;AF=0.734043,0.265957;AN=188;AO=7186,2698;CIGAR=1X,1X;DP=9887;DPB=9887;DPRA=106.301,1.17207;EPP=15607.2,5861.64;EPPR=9.52472;GTI=1;LEN=1,1;MEANALT=1.60215,1.98246;MQM=35.9507,25.0304;MQMR=35.3333;NS=94;NUMALT=2;ODDS=1.31534;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=255648,96451;QR=108;RO=3;RPL=7186,2698;RPP=15607.2,5861.64;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=7186,2698;SAP=15607.2,5861.64;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:82:0,82,0:0:0:82,0:2894,0:-239.558,-24.6845,0,-239.558,-24.6845,-239.558	1/1:75:0,75,0:0:0:75,0:2656,0:-220.501,-22.5773,0,-220.501,-22.5773,-220.501	1/2:176:0,65,111:0:0:65,111:2316,3966:-384.919,-212.831,-193.264,-172.386,0,-138.971	1/2:268:0,110,158:0:0:110,158:3944,5676:-594.587,-303.354,-270.241,-291.527,0,-243.965	1/2:93:0,46,47:0:0:46,47:1635,1688:-211.184,-90.4072,-76.5598,-121.063,0,-106.915	1/2:28:0,11,17:0:0:11,17:396,612:-62.922,-33.542,-30.2307,-29.6789,0,-24.5614	1/1:104:0,104,0:0:0:104,0:3696,0:-303.41,-31.3071,0,-303.41,-31.3071,-303.41	1/2:205:0,111,94:0:0:111,94:3949,3372:-472.168,-180.527,-147.112,-291.924,0,-263.627	1/2:116:0,66,50:0:0:66,50:2354,1784:-269.291,-96.0411,-76.1731,-173.531,0,-158.479	1/1:65:0,65,0:0:0:65,0:2285,0:-189.936,-19.567,0,-189.936,-19.567,-189.936	1/2:32:0,15,17:0:0:15,17:540,608:-72.7221,-32.6611,-28.1457,-40.3513,0,-35.2338	1/1:111:0,111,0:0:0:111,0:3940,0:-325.577,-33.4143,0,-325.577,-33.4143,-325.577	1/2:107:0,54,53:0:0:54,53:1912,1900:-243.881,-101.881,-85.6255,-142.286,0,-126.331	1/1:56:0,56,0:0:0:56,0:2008,0:-165.669,-16.8577,0,-165.669,-16.8577,-165.669	1/1:83:0,83,0:0:0:83,0:2958,0:-242.927,-24.9855,0,-242.927,-24.9855,-242.927	1/1:86:0,86,0:0:0:86,0:3044,0:-251.381,-25.8886,0,-251.381,-25.8886,-251.381	1/2:40:0,20,20:0:0:20,20:712,716:-91.5513,-38.589,-32.5684,-53.2492,0,-47.2286	1/2:40:0,17,23:0:0:17,23:608,828:-89.5602,-44.3879,-39.2704,-45.466,0,-38.5423	1/1:26:0,26,0:0:0:26,0:908,0:-75.857,-7.82678,0,-75.857,-7.82678,-75.857	1/1:181:0,181,0:0:0:181,0:6442,0:-532.43,-54.4864,0,-532.43,-54.4864,-532.43	1/2:161:1,75,85:1:36:75,85:2688,3039:-357.966,-159.372,-139.727,-195.894,0,-173.238	1/1:157:0,157,0:0:0:157,0:5603,0:-462.749,-47.2617,0,-462.749,-47.2617,-462.749	1/2:181:0,99,82:0:0:99,82:3504,2921:-414.345,-156.994,-127.192,-257.631,0,-232.947	1/1:112:0,104,8:0:0:104,8:3656,288:-302.961,-31.3071,0,-287.613,-15.707,-285.205	1/1:97:0,97,0:0:0:97,0:3455,0:-285.294,-29.1999,0,-285.294,-29.1999,-285.294	1/2:216:0,118,98:0:0:118,98:4190,3505:-497.143,-187.784,-152.262,-309.641,0,-280.14	1/2:148:0,81,67:0:0:81,67:2904,2408:-344.193,-129.184,-104.8,-215.293,0,-195.124	1/2:35:0,16,19:0:0:16,19:576,660:-78.4399,-36.4631,-31.6466,-42.2653,0,-36.5457	1/2:286:0,151,135:0:0:151,135:5405,4831:-657.904,-258.73,-213.275,-399.458,0,-358.819	1/1:114:0,106,8:0:0:106,8:3808,288:-312.865,-31.9092,0,-297.517,-16.309,-295.109	1/1:103:0,95,8:0:0:95,8:3393,288:-280.657,-28.5979,0,-265.31,-12.9977,-262.902	2/2:1:0,0,1:0:0:0,1:0,36:-2.46691,-2.46691,-2.46691,-0.30103,-0.30103,0	1/2:4:0,3,1:0:0:3,1:108,36:-10.2326,-2.16588,-1.26279,-8.33418,0,-8.03315	1/1:3:0,3,0:0:0:3,0:108,0:-9.23727,-0.90309,0,-9.23727,-0.90309,-9.23727	1/2:6:0,2,4:0:0:2,4:72,144:-14.1643,-8.69314,-8.09108,-5.78443,0,-4.58031	1/1:1:0,1,0:0:0:1,0:36,0:-3.29902,-0.30103,0,-3.29902,-0.30103,-3.29902	1/1:241:0,241,0:0:0:241,0:8590,0:-710.914,-72.5482,0,-710.914,-72.5482,-710.914	1/1:222:0,222,0:0:0:222,0:7925,0:-653.661,-66.8287,0,-653.661,-66.8287,-653.661	1/2:53:0,33,20:0:0:33,20:1167,712:-125.399,-38.5477,-28.6137,-87.1273,0,-81.1067	1/1:2:0,2,0:0:0:2,0:72,0:-6.26815,-0.60206,0,-6.26815,-0.60206,-6.26815	1/2:169:0,48,121:0:0:48,121:1705,4340:-356.615,-232.303,-217.854,-124.612,0,-88.187	1/1:24:0,24,0:0:0:24,0:847,0:-70.5586,-7.22472,0,-70.5586,-7.22472,-70.5586	1/1:247:0,244,3:0:0:244,3:8690,104:-718.839,-73.4513,0,-713.124,-67.4897,-712.221	1/1:64:0,64,0:0:0:64,0:2268,0:-187.53,-19.2659,0,-187.53,-19.2659,-187.53	1/1:80:0,80,0:0:0:80,0:2809,0:-232.387,-24.0824,0,-232.387,-24.0824,-232.387	1/1:101:0,101,0:0:0:101,0:3591,0:-297.902,-30.404,0,-297.902,-30.404,-297.902	1/2:149:0,48,101:0:0:48,101:1707,3628:-320.851,-194.002,-179.553,-127.15,0,-96.7459	1/1:272:0,272,0:0:0:272,0:9708,0:-797.937,-81.8802,0,-797.937,-81.8802,-797.937	1/2:148:0,92,56:0:0:92,56:3283,1993:-351.007,-107.177,-79.4827,-244.107,0,-227.249	1/2:127:0,51,76:0:0:51,76:1828,2715:-281.486,-145.82,-130.468,-135.962,0,-113.083	1/1:134:0,134,0:0:0:134,0:4765,0:-392.868,-40.338,0,-392.868,-40.338,-392.868	1/1:4:0,4,0:0:0:4,0:129,0:-11.0849,-1.20412,0,-11.0849,-1.20412,-11.0849	1/1:133:0,133,0:0:0:133,0:4729,0:-388.13,-40.037,0,-388.13,-40.037,-388.13	1/1:55:1,54,0:1:36:54,0:1917,0:-157.154,-15.3583,0,-157.455,-16.2556,-158.229	1/2:5:0,1,4:0:0:1,4:36,144:-10.6082,-7.92343,-7.6224,-2.99799,0,-1.79387	1/1:190:0,190,0:0:0:190,0:6679,0:-551.979,-57.1957,0,-551.979,-57.1957,-551.979	1/1:72:0,72,0:0:0:72,0:2552,0:-211.001,-21.6742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chr11	30797517	.	A	T	155219	PASS	AB=0.52388;ABP=26.552;AC=135;AF=0.725806;AN=186;AO=7401;CIGAR=1X;DP=9694;DPB=9694;DPRA=105.359;EPP=16074.1;EPPR=4973.51;GTI=3;LEN=1;MEANALT=1.03261;MQM=59.9535;MQMR=59.9454;NS=93;NUMALT=1;ODDS=0.159477;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264002;QR=81219;RO=2289;RPL=0;RPP=16074.1;RPPR=4973.51;RPR=7401;RUN=1;SAF=7401;SAP=16074.1;SAR=0;SRF=2289;SRP=4973.51;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:117:2,115:2:72:115:4109:-363.157,-28.3838,0	1/1:77:0,77:0:0:77:2768:-249.36,-23.1793,0	0/1:148:92,56:92:3270:56:1997:-135.443,0,-249.958	0/1:248:113,135:113:4034:135:4817:-359.027,0,-288.1	0/1:77:28,49:28:977:49:1760:-135.505,0,-65.0612	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	1/1:54:0,54:0:0:54:1939:-174.271,-16.2556,0	0/1:138:53,85:53:1896:85:3033:-231.657,0,-129.376	0/1:105:20,85:20:720:85:2998:-238.403,0,-33.5206	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:40:24,16:24:864:16:576:-40.1338,0,-66.0414	1/1:130:0,130:0:0:130:4653:-418.861,-39.1339,0	0/1:75:32,43:32:1144:43:1525:-114.964,0,-80.6923	1/1:71:0,71:0:0:71:2541:-228.939,-21.3731,0	1/1:80:0,80:0:0:80:2868:-258.357,-24.0824,0	1/1:73:0,73:0:0:73:2597:-233.967,-21.9752,0	0/1:42:23,19:23:798:19:684:-49.2415,0,-59.4908	0/1:40:21,19:21:752:19:684:-49.8491,0,-55.9651	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:349:0,349:0:0:349:12425:-1118.09,-105.059,0	0/1:151:78,73:78:2729:73:2581:-187.08,0,-200.392	1/1:232:0,232:0:0:232:8264:-743.764,-69.839,0	0/1:196:80,116:80:2829:116:4142:-313.961,0,-195.845	1/1:147:13,134:13:468:134:4816:-391.133,-1.79177,0	1/1:127:0,127:0:0:127:4481:-403.454,-38.2308,0	0/1:271:123,148:123:4352:148:5283:-394.026,0,-310.273	0/1:132:56,76:56:1997:76:2736:-206.746,0,-140.266	0/1:49:26,23:26:921:23:820:-59.372,0,-68.4547	0/1:246:114,132:114:4047:132:4699:-348.958,0,-290.362	1/1:116:4,112:4:144:112:4016:-348.315,-21.6059,0	1/1:112:0,112:0:0:112:4005:-360.638,-33.7154,0	0/1:5:2,3:2:72:3:108:-8.5696,0,-5.33157	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:240:0,240:0:0:240:8593:-773.363,-72.2472,0	1/1:191:0,191:0:0:191:6818:-613.667,-57.4967,0	0/1:50:27,23:27:957:23:820:-59.071,0,-71.3924	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:133:56,77:56:1967:77:2741:-206.895,0,-137.263	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:257:2,255:2:72:255:9121:-814.017,-70.528,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:73:0,71:0:0:71:2548:-229.211,-21.3731,0	1/1:73:0,73:0:0:73:2605:-234.697,-21.9752,0	0/1:137:67,70:67:2393:70:2501:-184.1,0,-174.383	1/1:211:0,211:0:0:211:7529:-677.651,-63.5173,0	0/1:112:61,51:61:2162:51:1832:-131.445,0,-161.127	0/1:107:53,54:53:1900:54:1921:-140.955,0,-139.068	1/1:70:0,69:0:0:69:2476:-222.734,-20.7711,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:171:0,171:0:0:171:6091:-548.287,-51.4761,0	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	1/1:174:1,173:1:36:173:6165:-551.348,-48.7809,0	1/1:23:0,23:0:0:23:812:-73.4009,-6.92369,0	0/1:9:7,2:7:237:2:72:-4.12745,0,-18.9498	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:73:39,34:39:1370:34:1216:-87.7471,0,-101.619	1/1:95:0,95:0:0:95:3408:-306.934,-28.5979,0	.:.:.:.:.:.:.:.	0/1:188:98,90:98:3447:90:3202:-231.807,0,-253.849	0/1:254:114,140:114:3964:140:4981:-371.97,0,-280.481	0/1:86:42,44:42:1512:44:1557:-114.531,0,-110.43	0/1:76:43,33:43:1525:33:1184:-83.99,0,-114.663	1/1:264:1,263:1:36:263:9334:-836.411,-75.8736,0	1/1:187:0,187:0:0:187:6632:-596.955,-56.2926,0	0/1:22:9,13:9:324:13:460:-35.1127,0,-22.8832	0/1:57:20,37:20:720:37:1328:-102.664,0,-47.9701	0/1:63:40,23:40:1436:23:813:-54.5242,0,-110.573	0/1:18:6,12:6:216:12:428:-33.4403,0,-14.372	1/1:143:0,142:0:0:142:5057:-454.928,-42.7463,0	0/1:69:35,34:35:1226:34:1224:-89.696,0,-89.8686	0/1:92:61,31:61:2192:31:1108:-72.3362,0,-169.851	1/1:219:0,219:0:0:219:7778:-700.037,-65.9256,0	0/1:119:59,60:59:2086:60:2089:-152.453,0,-152.181	1/1:100:0,100:0:0:100:3528:-317.726,-30.103,0	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	0/1:118:50,68:50:1762:68:2435:-183.883,0,-123.338	0/1:122:54,68:54:1914:68:2436:-182.766,0,-135.808	0/1:330:142,188:142:5062:188:6697:-503.442,0,-356.254	0/1:64:35,29:35:1230:29:1025:-73.2946,0,-91.7317	0/1:72:32,40:32:1140:40:1421:-106.511,0,-81.235	1/1:62:0,62:0:0:62:2213:-199.433,-18.6639,0	1/1:142:2,140:2:72:140:5026:-445.648,-35.9095,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:108:49,59:49:1760:59:2112:-157.838,0,-126.066	0/1:73:38,35:38:1353:35:1256:-91.3701,0,-100.093	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:75:42,33:42:1489:33:1169:-82.938,0,-111.717	0/1:81:57,24:57:2029:24:851:-52.5252,0,-158.497	1/1:140:0,140:0:0:140:4967:-447.178,-42.1442,0	1/1:125:0,125:0:0:125:4484:-403.726,-37.6288,0
chr11	30797523	.	CG	AG,AC	211500	PASS	AB=0.524136,0.474823;ABP=27.3293,29.471;AC=135,51;AF=0.725806,0.274194;AN=186;AO=7486,2308;CIGAR=1X1M,2X;DP=9803;DPB=9803;DPRA=106.543,1.01462;EPP=16232.6,5014.77;EPPR=0;GTI=3;LEN=1,2;MEANALT=1.69565,2.10526;MQM=59.9464,59.9454;MQMR=0;NS=93;NUMALT=2;ODDS=0.36851;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=268288,82233;QR=0;RO=0;RPL=3,0;RPP=16232.6,5014.77;RPPR=0;RPR=7483,2308;RUN=1,1;SAF=7486,2308;SAP=16258.7,5014.77;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:119:0,116,2:0:0:116,2:4153,72:-373.64,-34.9195,0,-367.765,-28.9448,-367.163	1/1:78:0,78,0:0:0:78,0:2808,0:-252.958,-23.4803,0,-252.958,-23.4803,-252.958	1/2:148:0,56,92:0:0:56,92:1993,3277:-429.875,-267.446,-250.589,-162.784,0,-135.089	1/2:251:0,136,115:0:0:136,115:4879,4109:-733.23,-335.27,-294.33,-398.318,0,-363.7	1/2:77:0,49,28:0:0:49,28:1745,979:-222.222,-79.9918,-65.2413,-142.582,0,-134.153	1/2:8:0,5,3:0:0:5,3:180,106:-23.6772,-8.98601,-7.48086,-15.0469,0,-14.1438	1/1:55:0,55,0:0:0:55,0:1960,0:-176.318,-16.5567,0,-176.318,-16.5567,-176.318	1/2:142:0,88,54:0:0:88,54:3160,1916:-414.238,-156.461,-129.97,-258.134,0,-241.878	1/2:106:0,86,20:0:0:86,20:3083,720:-310.52,-59.1082,-33.2196,-251.771,0,-245.751	1/1:79:0,79,0:0:0:79,0:2836,0:-255.478,-23.7814,0,-255.478,-23.7814,-255.478	1/2:42:0,17,25:0:0:17,25:607,885:-121.931,-72.4422,-67.3247,-49.8441,0,-42.3183	1/1:130:0,130,0:0:0:130,0:4680,0:-421.358,-39.1339,0,-421.358,-39.1339,-421.358	1/2:77:0,43,34:0:0:43,34:1544,1211:-225.013,-99.0612,-86.1169,-126.309,0,-116.074	1/1:73:0,73,0:0:0:73,0:2624,0:-236.407,-21.9752,0,-236.407,-21.9752,-236.407	1/1:82:0,82,0:0:0:82,0:2944,0:-265.193,-24.6845,0,-265.193,-24.6845,-265.193	1/1:72:0,72,0:0:0:72,0:2583,0:-232.711,-21.6742,0,-232.711,-21.6742,-232.711	1/2:42:0,19,23:0:0:19,23:658,817:-120.397,-66.9271,-61.2075,-53.8197,0,-46.896	1/2:40:0,19,21:0:0:19,21:680,754:-117.317,-61.8652,-56.1456,-55.8096,0,-49.488	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:353:0,353,0:0:0:353,0:12634,0:-1136.84,-106.264,0,-1136.84,-106.264,-1136.84	1/2:154:0,73,81:0:0:73,81:2624,2873:-448.498,-234.423,-212.448,-214.432,0,-190.048	1/1:236:0,236,0:0:0:236,0:8479,0:-763.101,-71.0431,0,-763.101,-71.0431,-763.101	1/2:200:0,119,81:0:0:119,81:4271,2874:-582.9,-234.512,-198.69,-348.743,0,-324.36	1/1:148:0,135,13:0:0:135,13:4852,466:-436.473,-40.6391,0,-398.466,-2.27376,-394.553	1/1:125:0,125,0:0:0:125,0:4469,0:-402.374,-37.6288,0,-402.374,-37.6288,-402.374	1/2:275:0,152,123:0:0:152,123:5441,4418:-804.466,-360.764,-315.008,-444.06,0,-407.033	1/2:131:0,75,56:0:0:75,56:2696,1992:-382.644,-162.694,-140.117,-220.307,0,-203.449	1/2:49:0,23,26:0:0:23,26:828,923:-143.123,-75.5602,-68.6365,-67.9204,0,-60.0936	1/2:246:0,132,113:0:0:132,113:4740,4052:-717.097,-330.49,-290.754,-386.606,0,-352.589	1/1:117:0,113,4:0:0:113,4:4052,144:-364.507,-34.0164,0,-352.757,-21.9069,-351.553	1/1:113:0,113,0:0:0:113,0:4051,0:-364.776,-34.0164,0,-364.776,-34.0164,-364.776	1/2:5:0,3,2:0:0:3,2:108,72:-15.0465,-6.23466,-5.33157,-9.17166,0,-8.5696	1/2:8:0,6,2:0:0:6,2:216,72:-23.8592,-6.23466,-4.42848,-17.9843,0,-17.3823	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:10:0,1,9:0:0:1,9:36,320:-29.3712,-26.4333,-26.1323,-3.29724,0,-0.587975	1/1:7:0,7,0:0:0:7,0:244,0:-22.2994,-2.10721,0,-22.2994,-2.10721,-22.2994	1/1:244:0,244,0:0:0:244,0:8777,0:-789.911,-73.4513,0,-789.911,-73.4513,-789.911	1/1:194:0,194,0:0:0:194,0:6941,0:-624.732,-58.3998,0,-624.732,-58.3998,-624.732	1/2:50:0,23,27:0:0:23,27:828,968:-146.871,-79.3096,-72.3859,-67.9204,0,-59.7926	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:135:0,78,57:0:0:78,57:2796,2011:-392.147,-164.103,-140.623,-228.4,0,-211.241	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:261:0,260,1:0:0:260,1:9257,36:-832.73,-78.2678,0,-829.793,-74.9706,-829.492	1/1:54:0,54,0:0:0:54,0:1944,0:-175.236,-16.2556,0,-175.236,-16.2556,-175.236	1/1:76:0,76,0:0:0:76,0:2732,0:-246.122,-22.8783,0,-246.122,-22.8783,-246.122	1/1:73:0,73,0:0:0:73,0:2609,0:-235.056,-21.9752,0,-235.056,-21.9752,-235.056	1/2:142:0,73,69:0:0:73,69:2570,2466:-410.613,-201.424,-179.448,-209.544,0,-188.773	1/1:215:0,215,0:0:0:215,0:7659,0:-689.344,-64.7215,0,-689.344,-64.7215,-689.344	1/2:112:0,51,61:0:0:51,61:1828,2190:-328.092,-179.002,-163.649,-149.448,0,-131.086	1/2:107:0,54,53:0:0:54,53:1944,1875:-311.695,-153.072,-136.816,-158.98,0,-143.026	1/1:71:0,71,0:0:0:71,0:2548,0:-229.57,-21.3731,0,-229.57,-21.3731,-229.57	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/1:172:0,172,0:0:0:172,0:6163,0:-554.764,-51.7772,0,-554.764,-51.7772,-554.764	1/1:68:0,68,0:0:0:68,0:2414,0:-217.513,-20.47,0,-217.513,-20.47,-217.513	1/2:19:0,9,10:0:0:9,10:320,347:-54.6348,-28.553,-25.8438,-26.4331,0,-23.4228	1/1:176:0,173,1:0:0:173,1:6197,36:-557.464,-52.0782,0,-554.527,-49.1408,-554.226	1/1:24:0,24,0:0:0:24,0:860,0:-77.7218,-7.22472,0,-77.7218,-7.224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chr11	30811284	.	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chr11	30877326	.	C	T	15505.1	PASS	AB=0.385672;ABP=308.867;AC=48;AF=0.258065;AN=186;AO=1051;CIGAR=1X;DP=5928;DPB=5928;DPRA=0.939324;EPP=2259.24;EPPR=10508.7;GTI=7;LEN=1;MEANALT=1.01887;MQM=59.8744;MQMR=60;NS=93;NUMALT=1;ODDS=2.48391;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37640;QR=174182;RO=4874;RPL=1048;RPP=2259.24;RPPR=10508.7;RPR=3;RUN=1;SAF=0;SAP=2285.23;SAR=1051;SRF=0;SRP=10586.8;SRR=4874;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:672:0:0:0,-5.71957,-60.8068	0/0:147:147,0:147:5264:0:0:0,-44.2514,-473.896	0/1:48:35,13:35:1256:13:457:-27.0132,0,-98.8958	0/1:83:75,8:75:2680:8:288:-1.28192,0,-216.46	0/1:31:23,8:23:828:8:288:-16.9355,0,-65.5122	0/1:21:16,5:16:563:5:180:-10.2304,0,-44.6775	0/0:74:74,0:74:2644:0:0:0,-22.2762,-238.207	0/1:58:34,24:34:1216:24:860:-60.2621,0,-92.2868	0/1:31:18,13:18:644:13:457:-32.1307,0,-48.9587	0/0:116:116,0:116:4168:0:0:0,-34.9195,-375.301	0/1:78:51,27:51:1812:27:966:-63.7769,0,-139.881	0/0:61:61,0:61:2171:0:0:0,-18.3628,-195.656	0/1:51:26,25:26:936:25:900:-65.9685,0,-69.2069	0/0:103:102,1:102:3643:1:36:0,-27.4078,-324.476	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/1:86:38,48:38:1368:48:1724:-129.426,0,-97.5322	0/1:55:31,24:31:1108:24:860:-61.1652,0,-83.4743	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/0:90:90,0:90:3214:0:0:0,-27.0927,-289.482	0/1:62:34,28:34:1220:28:1008:-72.3725,0,-91.4429	0/0:95:95,0:95:3400:0:0:0,-28.5978,-306.215	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:66:62,4:62:2212:4:144:0,-6.55436,-186.031	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:126:73,53:73:2619:53:1892:-132.628,0,-198.027	0/1:80:63,17:63:2260:17:612:-31.331,0,-179.58	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:95:65,30:65:2336:30:1076:-68.5541,0,-181.901	0/0:191:191,0:191:6833:0:0:0,-57.4967,-615.039	0/0:98:96,2:96:3444:2:72:0,-22.6642,-303.336	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:154:154,0:154:5483:0:0:0,-46.3586,-493.6	0/0:123:123,0:123:4392:0:0:0,-37.0267,-395.454	0/1:42:18,24:18:644:24:860:-65.0714,0,-45.6473	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:77:60,17:60:2152:17:612:-32.2341,0,-170.768	0/0:33:33,0:33:1172:0:0:0,-9.93399,-105.787	0/0:69:68,1:68:2444:1:36:0,-17.1728,-216.616	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.843	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:35:23,12:23:824:12:424:-27.9604,0,-63.9473	0/0:102:101,0:101:3590:0:0:0,-30.404,-322.945	0/1:76:51,25:51:1820:25:892:-57.7214,0,-141.203	0/1:70:60,10:60:2152:10:341:-9.94567,0,-172.875	0/0:78:78,0:78:2768:0:0:0,-23.4803,-249.36	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:92:92,0:92:3258:0:0:0,-27.6948,-293.442	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	.:.:.:.:.:.:.:.	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:59:43,15:43:1518:15:540:-31.117,0,-119.09	0/0:132:130,2:130:4660:2:72:0,-32.8992,-412.724	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:117:80,37:80:2860:37:1328:-84.5978,0,-222.417	0/1:118:84,34:84:3003:34:1224:-74.9455,0,-234.98	0/1:51:35,16:35:1256:16:576:-36.8201,0,-97.9928	0/1:37:24,13:24:852:13:464:-30.9594,0,-65.8623	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/1:33:23,10:23:824:10:360:-22.8103,0,-64.5493	0/1:40:19,21:19:669:21:748:-55.6041,0,-48.4927	0/1:101:46,55:46:1631:55:1960:-146.212,0,-116.674	0/1:27:23,4:23:815:4:144:-5.18581,0,-65.543	0/0:80:80,0:80:2838:0:0:0,-24.0824,-255.659	0/1:52:22,30:22:792:30:1080:-81.8597,0,-55.9521	0/1:76:45,31:45:1608:31:1097:-76.1579,0,-122.132	0/0:134:134,0:134:4785:0:0:0,-40.338,-430.806	0/1:72:52,20:52:1868:20:711:-42.6423,0,-146.725	0/0:113:113,0:113:4004:0:0:0,-34.0164,-360.548	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:58:37,21:37:1323:21:750:-50.3658,0,-101.912	0/1:46:37,9:37:1328:9:324:-15.6585,0,-105.975	0/1:66:35,31:35:1248:31:1116:-80.8837,0,-92.7569	0/1:97:49,48:49:1760:48:1709:-124.889,0,-129.484	0/1:74:37,37:37:1316:37:1332:-97.128,0,-96.4656	0/0:80:79,0:79:2807:0:0:0,-23.7814,-252.511	0/0:124:123,1:123:4412:1:36:0,-33.7294,-393.653	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:63:33,30:33:1188:30:1080:-78.5475,0,-88.2637	0/1:60:32,28:32:1140:28:1008:-72.9746,0,-84.8474	0/1:62:26,36:26:932:36:1296:-98.2801,0,-65.535	0/1:105:41,64:41:1455:64:2296:-175.293,0,-99.6371	0/1:33:11,22:11:392:22:792:-61.6717,0,-25.6861	0/0:43:43,0:43:1513:0:0:0,-12.9443,-136.461	0/0:72:72,0:72:2592:0:0:0,-21.6742,-233.528
chr11	30877778	.	C	T	43774.2	PASS	AB=0.514737;ABP=12.6749;AC=50;AF=0.268817;AN=186;AO=2662;CIGAR=1X;DP=9620;DPB=9620;DPRA=1.10879;EPP=5783.47;EPPR=15064.4;GTI=1;LEN=1;MEANALT=1.07143;MQM=59.902;MQMR=59.9632;NS=93;NUMALT=1;ODDS=2.23613;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93651;QR=248253;RO=6952;RPL=2662;RPP=5783.47;RPPR=15064.4;RPR=0;RUN=1;SAF=0;SAP=5783.47;SAR=2662;SRF=0;SRP=15099.1;SRR=6952;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:89:89,0:89:3173:0:0:0,-26.7917,-285.793	0/0:95:95,0:95:3393:0:0:0,-28.5978,-305.584	0/1:187:93,93:93:3340:93:3277:-238.802,0,-244.465	0/1:201:99,102:99:3514:102:3537:-258.028,0,-255.962	0/1:83:30,53:30:1061:53:1849:-141.703,0,-70.8139	0/1:23:13,10:13:464:10:352:-24.9857,0,-35.1738	0/0:179:179,0:179:6371:0:0:0,-53.8844,-573.474	0/1:140:62,77:62:2209:77:2725:-203.289,0,-156.845	0/1:184:86,98:86:3069:98:3442:-254.592,0,-221.048	0/0:80:80,0:80:2861:0:0:0,-24.0824,-257.726	0/1:80:48,32:48:1713:32:1144:-79.1871,0,-130.371	0/0:131:129,1:129:4616:1:36:0,-35.8955,-411.9	0/1:89:43,46:43:1548:46:1644:-121.457,0,-112.821	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/0:74:74,0:74:2634:0:0:0,-22.2762,-237.304	0/0:94:94,0:94:3371:0:0:0,-28.2968,-303.605	0/1:50:24,26:24:864:26:924:-68.418,0,-63.0311	0/1:37:21,16:21:748:16:576:-41.0369,0,-56.5072	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:266:266,0:266:9511:0:0:0,-80.074,-855.944	0/1:199:99,100:99:3540:100:3474:-252.968,0,-258.886	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/1:159:96,63:96:3424:63:2190:-149.5,0,-260.508	0/0:125:120,5:120:4308:5:172:0,-21.8108,-372.077	0/0:144:144,0:144:5164:0:0:0,-43.3483,-464.9	0/1:290:118,172:118:4210:172:6017:-454.34,0,-291.78	0/1:266:138,127:138:4918:127:4496:-324.83,0,-362.786	0/1:32:13,19:13:468:19:665:-50.5398,0,-32.8267	0/1:208:116,92:116:4164:92:3237:-228.94,0,-312.327	0/0:103:99,4:99:3549:4:140:0,-18.0615,-306.672	0/0:122:121,1:121:4295:1:32:0,-33.5263,-383.526	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:178:178,0:178:6361:0:0:0,-53.5833,-572.575	0/0:86:86,0:86:3058:0:0:0,-25.8886,-275.447	0/1:58:30,28:30:1076:28:1000:-72.8556,0,-79.6925	.:.:.:.:.:.:.:.	0/1:149:78,71:78:2781:71:2523:-182.469,0,-205.676	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:186:186,0:186:6609:0:0:0,-55.9916,-594.887	0/0:85:85,0:85:3052:0:0:0,-25.5875,-274.909	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:166:166,0:166:5937:0:0:0,-49.971,-534.437	0/1:111:50,61:50:1777:61:2164:-161.613,0,-126.797	0/0:158:157,0:157:5616:0:0:0,-47.2617,-505.191	0/1:97:57,40:57:2040:40:1412:-98.1774,0,-154.672	0/1:105:53,52:53:1900:52:1828:-133.193,0,-139.667	0/0:149:149,0:149:5296:0:0:0,-44.8535,-476.772	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:124:122,2:122:4376:2:68:0,-30.87,-387.555	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	0/0:146:146,0:146:5210:0:0:0,-43.9504,-469.02	0/0:87:83,4:83:2972:4:144:0,-12.876,-254.399	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	0/1:94:40,54:40:1432:54:1887:-141.803,0,-100.653	0/0:95:95,0:95:3416:0:0:0,-28.5978,-307.653	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	0/1:89:36,53:36:1283:53:1849:-139.396,0,-88.981	0/1:192:85,107:85:3033:107:3784:-282.943,0,-215.401	0/1:59:30,29:30:1076:29:1035:-75.7031,0,-79.2622	0/1:58:37,21:37:1332:21:705:-46.3032,0,-102.723	0/0:206:205,1:205:7247:1:32:0,-58.8129,-649.083	0/0:142:142,0:142:5074:0:0:0,-42.7463,-456.765	0/1:64:33,31:33:1165:31:1085:-78.691,0,-85.8891	0/1:71:31,40:31:1108:40:1393:-104.289,0,-78.6579	0/1:58:33,25:33:1188:25:884:-62.4186,0,-89.7689	0/1:22:8,14:8:288:14:492:-37.9897,0,-19.6447	0/0:120:119,0:119:4261:0:0:0,-35.8226,-383.307	0/1:114:55,59:55:1953:59:2073:-152.522,0,-141.718	0/1:241:121,120:121:4302:120:4181:-303.928,0,-314.808	0/0:116:116,0:116:4153:0:0:0,-34.9195,-373.95	0/1:140:69,71:69:2446:71:2504:-183.47,0,-178.248	0/0:99:99,0:99:3499:0:0:0,-29.802,-315.119	0/1:14:12,2:12:432:2:68:-2.24329,0,-35.0068	0/1:113:61,52:61:2188:52:1805:-126.978,0,-163.169	0/1:123:62,61:62:2224:61:2172:-158.72,0,-163.397	0/1:291:130,161:130:4638:161:5648:-420.851,0,-329.981	0/1:54:24,30:24:864:30:1076:-80.6649,0,-61.82	0/1:79:39,40:39:1396:40:1416:-103.956,0,-102.147	0/0:48:48,0:48:1705:0:0:0,-14.4494,-153.734	0/0:107:107,0:107:3791:0:0:0,-32.2102,-341.386	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:72:36,36:36:1288:36:1276:-93.4689,0,-94.5494	0/1:110:53,57:53:1896:57:2016:-148.572,0,-137.805	0/1:52:29,23:29:1040:23:809:-57.4747,0,-78.2608	0/1:146:58,88:58:2057:88:3121:-237.158,0,-141.447	0/1:81:20,61:20:705:61:2168:-171.004,0,-39.161	0/0:127:127,0:127:4537:0:0:0,-38.2308,-408.496	0/0:100:100,0:100:3558:0:0:0,-30.103,-320.426
chr11	30877841	.	CATCT	CATCG	168228	PASS	AB=0.505789;ABP=4.36794;AC=138;AF=0.734043;AN=188;AO=6473;CIGAR=4M1X;DP=8849;DPB=8849;DPRA=0;EPP=14059;EPPR=4910.54;GTI=1;LEN=1;MEANALT=2.02128;MQM=56.8214;MQMR=58.8819;NS=94;NUMALT=1;ODDS=1.60401;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=228430;QR=75951;RO=2260;RPL=2267;RPP=1264.27;RPPR=270.874;RPR=4206;RUN=1;SAF=2267;SAP=1264.27;SAR=4206;SRF=866;SRP=270.874;SRR=1394;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,46:0:0:46:1634:-146.898,-13.8474,0	1/1:85:0,82:0:0:82:2888:-258.315,-24.6845,0	0/1:184:72,109:72:2459:109:3873:-292.962,0,-166.718	0/1:123:61,62:61:1986:62:2177:-158.956,0,-141.919	0/1:58:30,27:30:1002:27:964:-69.2512,0,-72.9206	0/1:48:23,25:23:776:25:892:-65.8507,0,-55.4569	1/1:124:0,124:0:0:124:4396:-395.264,-37.3277,0	0/1:137:79,58:79:2675:58:2028:-141.092,0,-199.504	0/1:116:50,61:50:1665:61:2188:-163.103,0,-116.338	1/1:105:0,104:0:0:104:3672:-329.833,-31.3071,0	0/1:102:53,48:53:1818:48:1690:-121.523,0,-133.124	1/1:111:0,110:0:0:110:3873:-347.611,-33.1133,0	0/1:130:63,64:63:2181:64:2220:-160.724,0,-157.897	1/1:123:0,123:0:0:123:4334:-389.813,-37.0267,0	1/1:116:0,116:0:0:116:4087:-367.25,-34.9195,0	1/1:120:0,120:0:0:120:4225:-379.842,-36.1236,0	0/1:99:44,55:44:1359:55:1912:-142.338,0,-92.6763	0/1:89:35,52:35:1136:52:1798:-135.241,0,-75.9568	1/1:89:0,88:0:0:88:3113:-279.304,-26.4906,0	1/1:112:1,109:1:36:109:3846:-342.52,-29.8589,0	0/1:91:40,51:40:1313:51:1806:-134.712,0,-91.0069	1/1:50:0,48:0:0:48:1719:-154.577,-14.4494,0	0/1:48:21,26:21:719:26:932:-69.7089,0,-50.6148	1/1:78:1,75:1:36:75:2632:-233.41,-19.5993,0	1/1:65:0,65:0:0:65:2324:-209.346,-19.567,0	0/1:172:90,81:90:3023:81:2824:-201.912,0,-220.399	0/1:159:67,89:67:2313:89:3184:-239.052,0,-161.208	0/1:44:17,27:17:593:27:959:-73.3022,0,-40.4514	0/1:177:87,86:87:2980:86:3059:-222.931,0,-216.011	1/1:69:2,64:2:72:64:2262:-196.49,-13.3586,0	1/1:78:0,77:0:0:77:2716:-244.159,-23.1793,0	0/1:10:5,5:5:179:5:180:-13.5194,0,-13.4501	0/1:15:8,7:8:281:7:252:-18.5088,0,-21.1149	1/1:5:0,5:0:0:5:180:-16.5326,-1.50515,0	0/1:7:1,6:1:36:6:216:-17.663,0,-1.49006	1/1:22:0,22:0:0:22:788:-71.0082,-6.62266,0	1/1:256:1,253:1:22:253:8880:-795.268,-74.4778,0	1/1:85:0,85:0:0:85:3034:-272.822,-25.5876,0	0/1:107:57,49:57:1859:49:1684:-119.338,0,-135.439	1/1:5:0,5:0:0:5:157:-14.4394,-1.50515,0	0/1:104:47,56:47:1561:56:1960:-145.085,0,-109.517	1/1:112:0,108:0:0:108:3819:-342.981,-32.5112,0	1/1:161:0,157:0:0:157:5593:-502.171,-47.2617,0	1/1:91:0,90:0:0:90:3148:-282.372,-27.0927,0	1/1:93:0,90:0:0:90:3124:-280.508,-27.0927,0	1/1:89:0,87:0:0:87:3062:-275.151,-26.1896,0	0/1:117:54,61:54:1820:61:2159:-159.247,0,-129.229	1/1:146:0,145:0:0:145:5096:-457.809,-43.6494,0	0/1:74:28,45:28:953:45:1615:-123.247,0,-63.8082	0/1:108:52,55:52:1762:55:1968:-144.868,0,-126.404	1/1:144:0,142:0:0:142:5017:-450.865,-42.7463,0	1/1:14:0,14:0:0:14:491:-44.4642,-4.21442,0	1/1:125:1,122:1:31:122:4316:-384.385,-34.2083,0	1/1:43:0,43:0:0:43:1527:-137.594,-12.9443,0	0/1:20:17,3:17:579:3:104:-3.66515,0,-46.3982	1/1:124:0,122:0:0:122:4340:-389.365,-36.7257,0	1/1:37:0,37:0:0:37:1313:-118.34,-11.1381,0	0/1:10:6,3:6:184:3:108:-7.11909,0,-13.9309	1/1:15:0,15:0:0:15:540:-48.7606,-4.51545,0	0/1:100:34,64:34:1159:64:2255:-172.662,0,-74.7721	1/1:116:5,109:5:169:109:3837:-329.331,-19.0955,0	0/1:4:3,1:3:91:1:36:-2.39415,0,-7.28715	0/1:108:46,62:46:1534:62:2199:-164.561,0,-105.76	0/1:170:82,86:82:2765:86:3054:-223.44,0,-198.037	0/1:73:41,32:41:1392:32:1152:-81.8697,0,-103.549	0/1:57:29,28:29:933:28:1008:-73.8236,0,-67.0164	1/1:136:1,135:1:36:135:4747:-423.264,-37.3418,0	1/1:110:1,109:1:36:109:3854:-343.129,-29.515,0	0/1:74:46,28:46:1538:28:967:-65.0481,0,-116.342	0/1:72:34,38:34:1161:38:1323:-97.3873,0,-83.1008	0/1:101:52,47:52:1717:47:1627:-116.569,0,-124.681	0/1:22:10,11:10:316:11:396:-29.4101,0,-22.2067	1/1:71:0,69:0:0:69:2423:-216.557,-20.7711,0	0/1:100:45,54:45:1533:54:1921:-142.767,0,-108.167	0/1:175:89,85:89:2964:85:3001:-217.439,0,-214.076	1/1:125:0,125:0:0:125:4433:-398.375,-37.6288,0	0/1:138:69,69:69:2297:69:2436:-177.453,0,-165.246	1/1:115:0,115:0:0:115:4075:-366.038,-34.6185,0	0/1:20:12,7:12:403:7:252:-17.0945,0,-30.6824	0/1:104:47,57:47:1601:57:2025:-150.056,0,-113.067	0/1:77:33,44:33:1113:44:1547:-116.121,0,-77.2758	0/1:181:96,82:96:3293:82:2910:-207.956,0,-242.38	0/1:104:61,40:61:2036:40:1415:-96.631,0,-152.56	0/1:111:49,60:49:1681:60:2136:-159.191,0,-118.513	1/1:88:0,84:0:0:84:2880:-259.029,-25.2865,0	1/1:151:0,147:0:0:147:5190:-466.855,-44.2514,0	1/1:30:0,30:0:0:30:1059:-95.2747,-9.0309,0	0/1:100:46,50:46:1460:50:1733:-126.791,0,-102.46	0/1:100:45,54:45:1553:54:1918:-142.346,0,-109.806	0/1:95:40,53:40:1350:53:1870:-139.268,0,-93.4566	0/1:134:69,63:69:2351:63:2212:-159.079,0,-171.635	0/1:95:62,33:62:2060:33:1159:-75.9943,0,-157.064	1/1:102:0,101:0:0:101:3532:-317.341,-30.404,0	1/1:202:0,197:0:0:197:6950:-624.926,-59.3029,0
chr11	30877880	.	AGGCT	GGGCT	20288	PASS	AB=0.446653;ABP=73.9057;AC=51;AF=0.271277;AN=188;AO=1302;CIGAR=1X4M;DP=5591;DPB=5591.6;DPRA=0.933793;EPP=2830.27;EPPR=9214.4;GTI=3;LEN=1;MEANALT=1.41071;MQM=58.5745;MQMR=58.7284;NS=94;NUMALT=1;ODDS=1.47569;PAIRED=0;PAIREDR=0;PAO=2;PQA=70;PQR=0;PRO=0;QA=46194;QR=149935;RO=4242;RPL=1302;RPP=2830.27;RPPR=9214.4;RPR=0;RUN=1;SAF=0;SAP=2830.27;SAR=1302;SRF=0;SRP=9214.4;SRR=4242;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:37,0:37:1316:0:0:0,-11.1381,-118.64	0/0:48:48,0:48:1703:0:0:0,-14.4494,-153.493	0/1:103:68,34:68:2409:34:1220:-78.9371,0,-185.579	0/1:52:29,23:29:1012:23:812:-57.6904,0,-75.7365	0/1:34:19,13:19:672:13:456:-31.3582,0,-50.7919	0/1:34:16,17:16:564:17:608:-44.4502,0,-40.7152	0/0:80:80,0:80:2859:0:0:0,-24.0824,-257.492	0/1:81:41,40:41:1439:40:1412:-102.793,0,-105.341	0/1:88:52,35:52:1836:35:1228:-84.2099,0,-138.933	0/0:63:63,0:63:2213:0:0:0,-18.9649,-199.31	0/1:80:39,40:39:1382:40:1424:-104.233,0,-100.51	0/0:69:68,0:68:2430:0:0:0,-20.47,-218.167	0/1:97:46,50:46:1630:50:1780:-131.129,0,-116.905	0/0:103:102,0:102:3620:0:0:0,-30.7051,-325.306	0/0:76:76,0:76:2697:0:0:0,-22.8783,-242.833	0/0:73:72,0:72:2540:0:0:0,-21.6742,-228.436	0/1:67:42,25:42:1463:25:900:-61.0622,0,-111.759	0/1:49:31,17:31:1107:17:601:-39.5012,0,-84.9414	0/0:62:61,0:61:2175:0:0:0,-18.3628,-195.394	0/0:71:71,0:71:2515:0:0:0,-21.3731,-226.508	0/1:66:41,25:41:1461:25:888:-60.3155,0,-111.255	0/0:32:32,0:32:1122:0:0:0,-9.63296,-101.199	0/1:30:16,14:16:568:14:504:-36.6672,0,-42.3639	0/0:38:37,1:37:1295:1:36:0,-7.84086,-113.23	0/0:54:54,0:54:1910:0:0:0,-16.2556,-172.174	0/1:89:50,39:50:1753:39:1384:-98.0384,0,-131.21	0/1:101:65,35:65:2304:35:1240:-81.4126,0,-177.119	0/1:24:16,8:16:574:8:280:-18.3146,0,-44.7471	0/1:110:62,48:62:2201:48:1724:-122.276,0,-165.098	0/0:34:32,2:32:1130:2:72:0,-3.3983,-95.126	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.883	0/1:7:1,6:1:36:6:212:-17.2948,0,-1.49106	0/1:12:6,6:6:215:6:216:-16.1782,0,-16.0868	0/0:4:4,0:4:139:0:0:0,-1.20412,-12.8494	0/1:5:4,1:4:143:1:36:-2.09212,0,-11.7128	0/0:21:21,0:21:740:0:0:0,-6.32163,-66.6977	0/0:175:173,0:173:6135:0:0:0,-52.0782,-551.659	0/0:53:52,0:52:1840:0:0:0,-15.6536,-165.457	0/1:74:34,38:34:1193:38:1348:-99.5745,0,-85.5007	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9285	0/1:42:22,20:22:763:20:704:-51.0413,0,-56.3213	0/0:79:79,0:79:2804:0:0:0,-23.7814,-252.555	0/0:93:93,0:93:3270:0:0:0,-27.9958,-294.407	0/0:72:72,0:72:2541:0:0:0,-21.6742,-228.696	0/0:53:51,0:51:1770:0:0:0,-15.3525,-159.225	0/0:69:68,0:68:2399:0:0:0,-20.47,-215.491	0/1:63:32,31:32:1104:31:1076:-78.1609,0,-80.6726	0/0:74:74,0:74:2639:0:0:0,-22.2762,-237.671	0/1:39:26,13:26:933:13:452:-29.2138,0,-72.516	0/1:51:29,22:29:1035:22:780:-55.1705,0,-78.0824	0/0:84:84,0:84:2953:0:0:0,-25.2865,-265.933	0/0:5:5,0:5:170:0:0:0,-1.50515,-15.6053	0/0:57:56,0:56:1971:0:0:0,-16.8577,-177.016	0/0:29:29,0:29:1030:0:0:0,-8.72987,-92.9057	1/1:12:1,11:1:36:11:377:-30.6496,-0.0150909,0	0/0:87:87,0:87:3051:0:0:0,-26.1896,-274.259	0/0:18:18,0:18:634:0:0:0,-5.41854,-57.3871	0/1:5:2,3:2:66:3:108:-8.57002,0,-4.7628	0/0:11:11,0:11:385:0:0:0,-3.31133,-34.9564	0/1:69:43,26:43:1529:26:928:-62.9974,0,-116.889	0/0:95:88,4:88:3136:4:144:0,-14.739,-268.953	0/1:2:1,1:1:33:1:36:-2.99621,0,-2.69707	0/1:60:44,16:44:1566:16:572:-33.7516,0,-123.105	0/1:123:68,55:68:2408:55:1963:-139.564,0,-179.124	0/1:53:27,26:27:955:26:932:-68.1994,0,-70.2333	0/1:33:20,12:20:705:12:414:-27.5347,0,-53.7542	0/0:90:89,1:89:3132:1:32:0,-23.8934,-278.779	0/0:77:75,1:75:2655:1:36:0,-19.6383,-235.561	0/1:59:25,34:25:876:34:1194:-89.9581,0,-61.3933	0/1:34:19,15:19:658:15:532:-37.9649,0,-49.1477	0/1:61:29,28:29:1009:28:1000:-72.8104,0,-73.5916	0/1:16:11,5:11:391:5:180:-11.7356,0,-30.6846	0/0:31:31,0:31:1058:0:0:0,-9.33193,-94.8915	0/1:60:34,26:34:1188:26:920:-65.0301,0,-88.9966	0/1:111:57,54:57:2008:54:1924:-139.806,0,-147.559	0/0:68:67,0:67:2369:0:0:0,-20.169,-213.064	0/1:77:40,37:40:1402:37:1320:-95.8516,0,-103.088	0/0:70:69,0:69:2444:0:0:0,-20.7711,-219.795	0/1:14:5,9:5:180:9:316:-24.5582,0,-12.333	0/1:48:28,20:28:985:20:708:-49.5962,0,-74.4904	0/1:40:28,12:28:973:12:428:-26.8066,0,-75.8155	0/1:99:45,54:45:1601:54:1910:-142.088,0,-114.503	0/1:82:36,45:36:1250:45:1584:-117.916,0,-87.6917	0/1:65:38,27:38:1352:27:964:-67.4814,0,-102.385	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.332	0/0:133:133,0:133:4698:0:0:0,-40.037,-422.814	0/0:24:23,1:23:808:1:36:0,-3.70371,-69.4947	0/1:57:33,21:33:1181:21:748:-51.0273,0,-89.6705	0/1:66:37,26:37:1293:26:932:-64.783,0,-97.1342	0/1:67:38,29:38:1363:29:1032:-73.0011,0,-102.712	0/1:109:45,60:45:1591:60:2127:-159.482,0,-111.477	0/1:60:20,40:20:717:40:1404:-108.595,0,-46.7964	0/0:73:73,0:73:2582:0:0:0,-21.9752,-232.491	0/0:124:121,0:121:4318:0:0:0,-36.4246,-388.303
chr11	30902504	.	C	T	69044	PASS	AB=0.388821;ABP=356.451;AC=130;AF=0.691489;AN=188;AO=3528;CIGAR=1X;DP=7161;DPB=7161;DPRA=0.733959;EPP=7663.96;EPPR=7885.46;GTI=13;LEN=1;MEANALT=1.02174;MQM=59.8815;MQMR=59.9683;NS=94;NUMALT=1;ODDS=1.81918;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=126036;QR=129750;RO=3630;RPL=3528;RPP=7663.96;RPPR=7885.46;RPR=0;RUN=1;SAF=0;SAP=7663.96;SAR=3528;SRF=0;SRP=7885.46;SRR=3630;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:773:-69.8903,-6.62266,0	1/1:63:0,63:0:0:63:2260:-203.657,-18.9649,0	0/1:76:33,43:33:1165:43:1548:-116.734,0,-82.2767	0/1:114:56,57:56:1993:57:2044:-149.85,0,-145.261	0/1:27:14,13:14:500:13:468:-34.3318,0,-37.2084	0/0:13:12,1:12:432:1:36:0,-0.315115,-35.6229	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:61:39,22:39:1370:22:788:-52.8796,0,-105.232	0/1:54:28,26:28:1008:26:932:-67.9385,0,-74.7807	1/1:63:0,63:0:0:63:2233:-201.23,-18.9649,0	0/1:189:153,36:153:5461:36:1288:-59.3239,0,-434.724	1/1:31:0,31:0:0:31:1108:-100.029,-9.33193,0	0/1:35:14,21:14:489:21:752:-57.2939,0,-33.8028	1/1:69:0,69:0:0:69:2457:-220.605,-20.7711,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:27:0,27:0:0:27:957:-86.4439,-8.12781,0	0/1:34:16,18:16:561:18:644:-48.0556,0,-40.5821	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	1/1:26:0,26:0:0:26:936:-84.5586,-7.82678,0	1/1:82:0,82:0:0:82:2928:-263.755,-24.6845,0	0/1:67:24,43:24:856:43:1525:-117.371,0,-57.1921	1/1:47:0,47:0:0:47:1660:-149.688,-14.1484,0	0/1:42:25,17:25:900:17:612:-42.7702,0,-68.6778	1/1:37:1,36:1:36:36:1281:-111.993,-7.53984,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	0/1:168:88,80:88:3145:80:2856:-206.705,0,-232.701	0/1:121:64,57:64:2296:57:2033:-146.814,0,-170.476	0/1:12:2,10:2:72:10:360:-29.0011,0,-3.22436	0/1:176:89,87:89:3200:87:3128:-228.708,0,-235.241	1/1:101:2,99:2:72:99:3548:-312.491,-23.5673,0	1/1:57:0,57:0:0:57:2006:-180.81,-17.1587,0	0/0:209:208,1:208:7445:1:36:0,-59.317,-666.495	0/0:191:189,2:189:6735:2:72:0,-50.66,-598.76	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:353:350,3:350:12537:3:104:0,-96.5608,-1118.43	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:109:0,109:0:0:109:3908:-351.908,-32.8123,0	1/1:119:0,119:0:0:119:4244:-382.14,-35.8226,0	0/1:162:132,30:132:4732:30:1072:-48.0225,0,-377.271	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:61:32,29:32:1152:29:1040:-75.5506,0,-85.625	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:55:0,55:0:0:55:1938:-174.693,-16.5567,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:33:0,33:0:0:33:1188:-107.228,-9.93399,0	1/1:16:0,16:0:0:16:553:-50.094,-4.81648,0	0/1:58:36,22:36:1273:22:769:-52.067,0,-97.4112	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	0/1:58:32,26:32:1144:26:932:-66.7391,0,-85.8098	0/1:68:36,32:36:1288:32:1129:-81.4324,0,-95.7535	1/1:70:0,70:0:0:70:2492:-224.534,-21.0721,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:63:0,63:0:0:63:2241:-201.924,-18.9649,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	1/1:21:0,21:0:0:21:748:-67.6444,-6.32163,0	0/0:98:97,0:97:3492:0:0:0,-29.1999,-314.129	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:53:21,32:21:752:32:1137:-86.6824,0,-52.0517	1/1:92:1,91:1:36:91:3244:-288.584,-24.0965,0	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/1:78:23,54:23:794:54:1940:-151.319,0,-48.2348	0/1:96:45,51:45:1616:51:1828:-135.881,0,-116.831	0/1:37:12,25:12:432:25:900:-70.1829,0,-28.0831	0/1:48:20,28:20:716:28:1000:-75.8659,0,-50.3183	1/1:98:0,98:0:0:98:3492:-314.49,-29.5009,0	1/1:110:0,110:0:0:110:3944:-355.094,-33.1133,0	0/0:146:133,13:133:4756:13:468:0,-1.49073,-385.739	0/1:48:20,28:20:720:28:1000:-75.8659,0,-50.6793	0/1:50:24,26:24:856:26:924:-68.4262,0,-62.3096	0/0:304:296,8:296:10577:8:288:0,-65.2457,-925.577	1/1:58:0,58:0:0:58:2084:-187.823,-17.4597,0	0/1:30:14,16:14:504:16:572:-42.7825,0,-36.6672	0/1:93:52,41:52:1864:41:1476:-105.139,0,-140.044	1/1:95:0,95:0:0:95:3400:-305.72,-28.5979,0	0/1:39:30,9:30:1061:9:324:-17.7657,0,-84.0592	1/1:58:0,58:0:0:58:2057:-185.393,-17.4597,0	0/0:223:222,1:222:7925:1:36:0,-63.5314,-709.572	0/1:68:29,39:29:1040:39:1396:-105.469,0,-73.4443	0/1:69:34,35:34:1220:35:1256:-92.559,0,-89.3357	0/1:130:88,42:88:3145:42:1497:-95.8189,0,-244.14	0/1:67:26,41:26:928:41:1457:-111.25,0,-63.6692	0/1:29:17,12:17:612:12:428:-30.1289,0,-46.6836	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:73:1,72:1:36:72:2584:-229.211,-18.3769,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:44:21,23:21:756:23:828:-61.5988,0,-55.1219	0/1:29:13,16:13:453:16:576:-43.4451,0,-32.3698	0/1:207:184,23:184:6578:23:828:-12.5309,0,-529.699	0/1:439:384,55:384:13726:55:1972:-45.6027,0,-1102.96	0/1:36:28,8:28:993:8:288:-15.4303,0,-78.8454	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	1/1:52:0,52:0:0:52:1849:-166.68,-15.6536,0
chr11	30928937	.	A	C	128111	PASS	AB=0.533201;ABP=46.2667;AC=137;AF=0.736559;AN=186;AO=6180;CIGAR=1X;DP=8306;DPB=8306;DPRA=0;EPP=13422.7;EPPR=4617.39;GTI=2;LEN=1;MEANALT=1.01075;MQM=54.4168;MQMR=59.6993;NS=93;NUMALT=1;ODDS=2.18198;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=221060;QR=75856;RO=2125;RPL=0;RPP=13422.7;RPPR=4617.39;RPR=6180;RUN=1;SAF=6180;SAP=13422.7;SAR=0;SRF=2125;SRP=4617.39;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:748:-67.1184,-6.32163,0	0/1:80:42,38:42:1508:38:1368:-99.0359,0,-111.915	0/1:153:58,95:58:2065:95:3412:-260.24,0,-140.061	0/1:218:123,95:123:4405:95:3416:-241.409,0,-330.925	0/1:36:18,18:18:648:18:648:-47.7316,0,-47.8066	0/1:53:26,27:26:936:27:964:-70.9113,0,-68.5958	1/1:77:1,76:1:36:76:2700:-239.136,-19.581,0	0/1:120:46,74:46:1652:74:2613:-198.497,0,-112.836	0/1:79:47,32:47:1684:32:1148:-78.9567,0,-128.066	1/1:94:0,94:0:0:94:3364:-301.775,-28.2968,0	0/1:48:15,33:15:521:33:1184:-92.1744,0,-32.7645	1/1:67:0,67:0:0:67:2400:-214.687,-20.169,0	0/1:87:46,41:46:1652:41:1453:-104.569,0,-122.779	1/1:57:0,57:0:0:57:2044:-183.468,-17.1587,0	1/1:51:0,51:0:0:51:1817:-163.559,-15.3525,0	1/1:33:0,33:0:0:33:1184:-106.626,-9.93399,0	0/1:41:17,24:17:597:24:860:-65.0059,0,-41.7139	0/1:48:26,22:26:924:22:792:-56.6758,0,-69.02	1/1:37:0,37:0:0:37:1332:-118.583,-11.1381,0	1/1:152:0,152:0:0:152:5448:-489.161,-45.7566,0	0/1:128:59,69:59:2112:69:2449:-181.564,0,-151.812	1/1:169:0,169:0:0:169:6031:-542.341,-50.8741,0	0/1:52:18,34:18:644:34:1215:-92.7819,0,-42.637	1/1:66:5,61:5:172:61:2177:-179.621,-4.05001,0	1/1:91:0,91:0:0:91:3252:-292.172,-27.3937,0	0/1:328:133,195:133:4745:195:6953:-525.98,0,-328.463	0/1:210:92,118:92:3266:118:4240:-317.458,0,-230.89	0/1:55:21,34:21:756:34:1224:-93.5486,0,-51.806	0/1:267:115,152:115:4136:152:5425:-407.826,0,-292.003	1/1:57:3,54:3:108:54:1932:-163.705,-7.08354,0	1/1:62:0,62:0:0:62:2220:-199.541,-18.6639,0	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	0/1:21:6,15:6:216:15:540:-42.4198,0,-13.4689	1/1:3:0,3:0:0:3:108:-10.0498,-0.90309,0	1/1:9:0,9:0:0:9:324:-29.4317,-2.70927,0	1/1:10:0,10:0:0:10:360:-32.6564,-3.0103,0	1/1:226:0,225:0:0:225:8068:-725.012,-67.7318,0	1/1:195:0,195:0:0:195:6984:-626.495,-58.7009,0	0/1:39:18,21:18:633:21:756:-56.357,0,-45.5549	.:.:.:.:.:.:.:.	0/1:132:70,62:70:2520:62:2220:-159.042,0,-187.315	1/1:45:0,45:0:0:45:1608:-143.807,-13.5464,0	1/1:100:1,99:1:36:99:3540:-314.142,-26.5047,0	1/1:56:0,56:0:0:56:1991:-179.304,-16.8577,0	1/1:69:0,69:0:0:69:2464:-221.846,-20.7711,0	1/1:72:0,72:0:0:72:2584:-232.414,-21.6742,0	0/1:92:53,39:53:1892:39:1400:-98.2853,0,-142.397	1/1:312:2,310:2:72:310:11120:-990.619,-87.0846,0	0/1:157:67,90:67:2388:90:3220:-241.548,0,-167.895	0/1:125:73,52:73:2601:52:1864:-129.249,0,-196.704	1/1:173:0,173:0:0:173:6192:-557.054,-52.0782,0	1/1:3:0,3:0:0:3:108:-10.0679,-0.90309,0	1/1:163:0,163:0:0:163:5839:-523.412,-49.0679,0	1/1:14:0,14:0:0:14:500:-45.3239,-4.21442,0	1/1:7:0,7:0:0:7:252:-22.7867,-2.10721,0	1/1:134:1,133:1:36:133:4756:-423.748,-36.7397,0	1/1:63:0,63:0:0:63:2229:-200.497,-18.9649,0	0/1:11:1,10:1:36:10:356:-29.054,0,-0.286945	1/1:11:0,11:0:0:11:396:-35.9727,-3.31133,0	0/1:54:25,29:25:883:29:1040:-77.3647,0,-63.5318	1/1:82:0,82:0:0:82:2924:-262.957,-24.6845,0	0/1:8:1,7:1:36:7:252:-20.6038,0,-1.19003	0/1:218:105,113:105:3745:113:4052:-298.547,0,-271.623	0/1:165:62,103:62:2197:103:3672:-279.503,0,-148.266	0/1:71:25,46:25:885:46:1644:-126.599,0,-58.5872	0/1:85:30,55:30:1031:55:1980:-152.758,0,-67.5025	1/1:167:0,167:0:0:167:5968:-535.931,-50.272,0	1/1:73:1,72:1:36:72:2588:-228.974,-18.3769,0	0/1:15:5,10:5:180:10:360:-28.1645,0,-12.0366	0/1:105:51,54:51:1832:54:1928:-140.802,0,-133.544	0/1:61:38,23:38:1364:23:828:-56.4045,0,-104.698	0/1:14:9,5:9:324:5:180:-12.1546,0,-25.2914	1/1:49:0,49:0:0:49:1764:-158.285,-14.7505,0	0/1:59:29,30:29:1040:30:1076:-79.1153,0,-76.1536	0/1:114:51,63:51:1832:63:2244:-167.432,0,-130.801	1/1:204:0,204:0:0:204:7291:-655.65,-61.4101,0	0/1:70:26,44:26:921:44:1576:-120.499,0,-62.1239	1/1:89:0,89:0:0:89:3184:-285.146,-26.7917,0	0/1:10:2,8:2:72:8:284:-22.832,0,-3.82642	0/1:140:68,72:68:2432:72:2540:-185.893,0,-176.979	0/1:98:49,49:49:1741:49:1760:-128.595,0,-127.39	0/1:225:121,104:121:4344:104:3720:-266.568,0,-323.37	0/1:84:39,45:39:1389:45:1613:-119.874,0,-100.013	0/1:45:22,23:22:792:23:828:-61.1552,0,-58.0547	1/1:76:0,76:0:0:76:2708:-243.615,-22.8783,0	1/1:129:1,128:1:36:128:4588:-408.568,-35.2346,0	1/1:43:0,43:0:0:43:1536:-138.087,-12.9443,0	0/1:80:33,47:33:1165:47:1664:-124.408,0,-81.0644	0/1:56:24,32:24:852:32:1148:-86.5238,0,-60.1345	0/1:23:15,8:15:536:8:288:-19.3029,0,-41.6511	0/1:68:38,30:38:1356:30:1068:-75.7733,0,-101.861	0/1:67:49,18:49:1730:18:644:-37.9704,0,-135.798	1/1:85:0,85:0:0:85:3032:-272.561,-25.5876,0	1/1:92:1,91:1:36:91:3260:-289.617,-24.0965,0
chr11	30972443	.	T	C	223992	PASS	AB=0.49012;ABP=8.71691;AC=137;AF=0.728723;AN=188;AO=8591;CIGAR=1X;DP=12044;DPB=12044;DPRA=0;EPP=18649.4;EPPR=7490.25;GTI=2;LEN=1;MEANALT=1.05319;MQM=59.985;MQMR=59.9878;NS=94;NUMALT=1;ODDS=1.81201;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=301496;QR=123225;RO=3448;RPL=4384;RPP=10.9291;RPPR=39.8926;RPR=4207;RUN=1;SAF=4383;SAP=10.7511;SAR=4208;SRF=1845;SRP=39.8926;SRR=1603;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49:0:0:49:1725:-155.533,-14.7505,0	0/1:153:73,80:73:2605:80:2801:-206.269,0,-188.639	0/1:208:107,101:107:3815:101:3591:-260.784,0,-280.934	0/1:193:117,75:117:4208:75:2595:-175.677,0,-320.781	0/1:52:29,22:29:1044:22:788:-55.5325,0,-78.5624	0/1:76:47,29:47:1684:29:1021:-69.322,0,-128.969	1/1:59:0,59:0:0:59:2028:-182.789,-17.7608,0	0/1:101:56,45:56:2003:45:1616:-115.326,0,-150.139	0/1:137:75,62:75:2683:62:2141:-151.712,0,-200.473	1/1:114:0,114:0:0:114:4011:-361.177,-34.3174,0	0/1:172:77,94:77:2732:94:3239:-239.895,0,-194.286	1/1:222:1,221:1:32:221:7676:-687.693,-63.6293,0	0/1:177:77,100:77:2760:100:3467:-258.961,0,-195.359	1/1:158:1,157:1:36:157:5517:-493.063,-43.9645,0	1/1:161:0,161:0:0:161:5631:-506.92,-48.4658,0	1/1:149:0,149:0:0:149:5140:-462.75,-44.8535,0	0/1:107:61,45:61:2161:45:1587:-110.851,0,-162.486	0/1:139:63,76:63:2260:76:2608:-193.122,0,-161.819	1/1:94:0,94:0:0:94:3309:-298.031,-28.2968,0	1/1:171:0,171:0:0:171:5945:-535.166,-51.4761,0	0/1:187:84,103:84:3007:103:3609:-268.725,0,-214.568	1/1:46:0,46:0:0:46:1623:-146.358,-13.8474,0	0/1:96:49,47:49:1751:47:1659:-120.698,0,-128.975	0/1:147:14,133:14:504:133:4650:-374.412,0,-1.44668	1/1:62:0,62:0:0:62:2139:-192.776,-18.6639,0	0/1:254:140,114:140:5016:114:4034:-286.786,0,-375.125	0/1:283:158,125:158:5676:125:4403:-311.253,0,-424.577	0/1:98:52,46:52:1863:46:1610:-115.687,0,-138.448	0/1:200:97,103:97:3462:103:3641:-267.689,0,-251.586	1/1:107:0,107:0:0:107:3760:-338.601,-32.2102,0	1/1:123:2,121:2:72:121:4273:-377.908,-30.19,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:12:8,4:8:280:4:144:-9.70126,0,-21.9269	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	0/1:2:1,1:1:27:1:36:-2.99621,0,-2.09772	1/1:12:0,12:0:0:12:419:-38.0427,-3.61236,0	1/1:369:0,369:0:0:369:12914:-1162.1,-111.08,0	1/1:74:0,74:0:0:74:2636:-237.485,-22.2762,0	0/1:129:54,75:54:1936:75:2609:-196.222,0,-135.684	1/1:1:0,1:0:0:1:27:-2.69978,-0.30103,0	0/1:157:70,87:70:2491:87:3054:-227.826,0,-177.181	1/1:76:0,76:0:0:76:2674:-240.905,-22.8783,0	1/1:188:0,188:0:0:188:6616:-595.524,-56.5936,0	1/1:176:0,176:0:0:176:6274:-564.756,-52.9813,0	1/1:138:0,138:0:0:138:4785:-430.811,-41.5421,0	1/1:124:1,123:1:36:123:4357:-388.707,-33.7294,0	0/1:197:95,102:95:3396:102:3646:-269.042,0,-246.553	1/1:163:0,163:0:0:163:5719:-514.831,-49.0679,0	0/1:116:62,54:62:2217:54:1915:-137.706,0,-164.873	0/1:154:92,62:92:3291:62:2174:-149.565,0,-250.049	1/1:87:0,87:0:0:87:3043:-274.097,-26.1896,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:221:0,221:0:0:221:7796:-701.25,-66.5276,0	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:155:1,154:1:36:154:5400:-482.529,-43.0614,0	1/1:51:0,51:0:0:51:1749:-157.686,-15.3525,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:28:0,28:0:0:28:997:-90.0439,-8.42884,0	0/1:102:57,45:57:2044:45:1576:-111.423,0,-153.527	1/1:230:1,229:1:36:229:8040:-720.032,-65.6386,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:150:68,82:68:2420:82:2850:-211.582,0,-172.899	0/1:182:103,79:103:3704:79:2783:-195.922,0,-278.773	0/1:113:65,48:65:2332:48:1679:-117.377,0,-176.123	0/1:92:45,47:45:1601:47:1675:-123.342,0,-116.683	1/1:176:4,172:4:144:172:6077:-533.722,-39.6677,0	1/1:118:1,117:1:36:117:4114:-366.718,-31.9233,0	0/1:119:68,51:68:2424:51:1755:-122.405,0,-182.593	0/1:98:43,55:43:1540:55:1948:-146.092,0,-109.392	0/1:186:114,72:114:4073:72:2548:-173.578,0,-310.764	0/1:44:17,27:17:608:27:953:-72.838,0,-41.8067	1/1:79:0,79:0:0:79:2791:-251.113,-23.7814,0	0/1:136:80,56:80:2861:56:2004:-139.693,0,-216.786	0/1:173:89,84:89:3161:84:2990:-217.254,0,-232.636	1/1:178:0,178:0:0:178:6302:-567.275,-53.5833,0	0/1:125:76,49:76:2720:49:1740:-119.254,0,-207.415	1/1:158:5,153:5:180:153:5439:-473.088,-31.0107,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:188:86,102:86:3068:102:3548:-262.933,0,-219.753	0/1:140:71,69:71:2537:69:2424:-176.27,0,-186.435	0/1:181:97,83:97:3440:83:2923:-208.857,0,-255.364	0/1:153:74,79:74:2639:79:2753:-201.953,0,-191.699	0/1:179:82,97:82:2923:97:3380:-250.532,0,-209.421	1/1:181:1,180:1:36:180:6281:-561.791,-50.8882,0	1/1:294:2,292:2:72:292:10163:-907.787,-81.6661,0	1/1:51:0,51:0:0:51:1768:-159.398,-15.3525,0	0/1:156:83,73:83:2959:73:2546:-182.428,0,-219.583	0/1:140:76,64:76:2710:64:2254:-160.979,0,-201.999	0/1:118:61,57:61:2196:57:2002:-144.931,0,-162.384	0/1:224:97,127:97:3472:127:4451:-333.336,0,-245.261	0/1:154:100,54:100:3557:54:1889:-123.925,0,-273.98	1/1:156:0,156:0:0:156:5496:-494.77,-46.9607,0	1/1:262:1,261:1:36:261:9181:-822.672,-75.2716,0
chr11	30973360	.	T	C	76606	PASS	AB=0.527085;ABP=54.8848;AC=50;AF=0.265957;AN=188;AO=4327;CIGAR=1X;DP=14929;DPB=14929;DPRA=1.29355;EPP=9398.97;EPPR=23009.8;GTI=1;LEN=1;MEANALT=1.07576;MQM=42.841;MQMR=49.7243;NS=94;NUMALT=1;ODDS=0.367368;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152512;QR=376650;RO=10595;RPL=2028;RPP=39.8661;RPPR=142.506;RPR=2299;RUN=1;SAF=2028;SAP=39.8661;SAR=2299;SRF=4885;SRP=142.506;SRR=5710;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:110:110,0:110:3927:0:0:0,-33.1133,-342.768	0/1:215:108,107:108:3839:107:3751:-206.024,0,-260.511	0/1:172:87,85:87:3112:85:2987:-186.786,0,-219.985	0/1:334:164,170:164:5863:170:5994:-388.473,0,-417.354	0/1:65:24,41:24:860:41:1468:-82.8561,0,-57.2025	0/1:47:20,27:20:712:27:959:-54.3527,0,-46.3747	0/0:140:139,1:139:4974:1:36:0,-39.6773,-435.262	0/1:248:114,134:114:4059:134:4696:-270.317,0,-272.325	0/1:203:95,108:95:3388:108:3836:-233.015,0,-233.724	0/0:204:203,0:203:7193:0:0:0,-61.1091,-630.091	0/1:116:56,60:56:1969:60:2122:-132.585,0,-138.967	0/0:171:171,0:171:6093:0:0:0,-51.4761,-523.888	0/1:156:82,74:82:2896:74:2615:-140.169,0,-201.733	0/0:114:114,0:114:4051:0:0:0,-34.3174,-353.265	0/0:138:138,0:138:4915:0:0:0,-41.5421,-431.74	0/0:133:132,1:132:4686:1:32:0,-37.6158,-407.187	0/1:117:63,53:63:2219:53:1888:-80.9878,0,-153.045	0/1:122:54,68:54:1932:68:2390:-124.941,0,-126.734	0/0:69:68,1:68:2409:1:36:0,-17.1818,-202.771	0/0:340:339,1:339:12052:1:36:0,-98.7519,-1062.53	0/1:229:110,119:110:3885:119:4103:-253.984,0,-272.569	0/0:152:152,0:152:5399:0:0:0,-45.7566,-469.686	0/1:236:120,116:120:4260:116:4102:-269.961,0,-308.206	0/0:265:253,12:253:8995:12:418:0,-49.0194,-747.038	0/0:143:143,0:143:5087:0:0:0,-43.0473,-449.016	0/1:396:194,201:194:6926:201:7135:-357.433,0,-465.883	0/1:316:146,170:146:5222:170:6000:-354.571,0,-358.036	0/1:81:30,51:30:1059:51:1779:-113.993,0,-68.0136	0/1:469:222,247:222:7914:247:8749:-517.058,0,-546.191	0/0:152:142,10:142:5068:10:356:0,-22.3197,-420.787	0/0:202:202,0:202:7177:0:0:0,-60.8081,-625.877	0/1:7:3,4:3:108:4:144:-9.11337,0,-7.96796	0/1:43:17,26:17:608:26:923:-64.9357,0,-42.1077	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.0014	0/1:12:8,4:8:275:4:136:-5.55006,0,-21.1981	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:339:339,0:339:11993:0:0:0,-102.049,-1026.29	0/0:170:170,0:170:6008:0:0:0,-51.1751,-516.281	0/1:127:52,75:52:1843:75:2596:-150.161,0,-119.986	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.63658	0/1:236:116,120:116:4123:120:4228:-254.934,0,-289.296	0/0:49:49,0:49:1748:0:0:0,-14.7505,-152.737	0/0:280:279,1:279:9922:1:36:0,-81.8215,-877.91	0/0:161:160,1:160:5689:1:36:0,-45.8172,-493.001	0/0:140:139,1:139:4940:1:36:0,-39.4956,-430.308	0/0:204:203,0:203:7237:0:0:0,-61.1091,-623.793	0/1:207:108,99:108:3842:99:3518:-203.646,0,-258.062	0/0:188:188,0:188:6695:0:0:0,-56.5936,-589.482	0/1:160:73,86:73:2601:86:3054:-196.251,0,-179.096	0/1:176:93,82:93:3328:82:2911:-182.062,0,-237.714	0/0:308:307,1:307:10912:1:36:0,-89.119,-940.098	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.5976	0/0:170:170,0:170:6065:0:0:0,-51.1751,-527.384	0/0:84:84,0:84:2985:0:0:0,-25.2865,-263.46	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:223:223,0:223:7912:0:0:0,-67.1297,-691.997	0/0:95:93,1:93:3295:1:36:0,-25.0134,-288.843	0/1:3:1,2:1:36:2:68:-4.56618,0,-2.69518	0/0:26:26,0:26:917:0:0:0,-7.82678,-80.3096	0/1:131:59,72:59:2095:72:2530:-169.687,0,-144.549	0/0:171:170,1:170:6048:1:36:0,-48.8275,-530.358	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.85243	0/1:180:67,113:67:2400:113:4023:-232.601,0,-151.335	0/1:293:140,153:140:4988:153:5427:-339.361,0,-350.379	0/1:131:49,82:49:1744:82:2885:-188.007,0,-113.306	0/1:162:74,88:74:2611:88:3119:-194.092,0,-183.385	0/0:289:289,0:289:10260:0:0:0,-86.9977,-900.874	0/0:246:245,1:245:8703:1:36:0,-71.4048,-772.685	0/1:78:37,41:37:1319:41:1429:-91.3918,0,-93.7895	0/1:141:76,65:76:2703:65:2277:-110.885,0,-190.88	0/1:148:64,84:64:2250:84:2926:-158.585,0,-147.094	0/1:21:17,4:17:612:4:144:-5.23509,0,-48.5423	0/0:194:194,0:194:6907:0:0:0,-58.3998,-600.446	0/1:126:63,63:63:2231:63:2207:-135.426,0,-160.835	0/1:248:135,113:135:4813:113:3923:-230.226,0,-340.711	0/0:228:228,0:228:8108:0:0:0,-68.6348,-714.526	0/1:114:27,87:27:953:87:3054:-194.568,0,-48.8277	0/0:159:158,1:158:5651:1:36:0,-45.6806,-488.91	0/1:23:12,11:12:428:11:388:-24.466,0,-28.1315	0/1:198:88,110:88:3144:110:3904:-237.882,0,-211.598	0/1:169:81,88:81:2888:88:3075:-176.308,0,-200.176	0/1:451:230,221:230:8171:221:7809:-492.375,0,-581.98	0/1:177:87,90:87:3084:90:3184:-188.683,0,-216.393	0/1:157:82,75:82:2940:75:2675:-170.623,0,-207.722	0/0:162:162,0:162:5777:0:0:0,-48.7669,-501.872	0/0:235:234,1:234:8244:1:32:0,-68.1612,-714.639	0/0:61:61,0:61:2167:0:0:0,-18.3628,-185.068	0/1:135:67,68:67:2367:68:2360:-140.73,0,-164.713	0/1:140:51,89:51:1832:89:3144:-189.408,0,-116.091	0/1:89:46,43:46:1631:43:1506:-85.8037,0,-115.288	0/1:159:71,88:71:2520:88:3090:-189.388,0,-174.143	0/1:175:62,113:62:2175:113:3975:-257.565,0,-140.168	0/0:28:28,0:28:977:0:0:0,-8.42884,-83.97	0/0:207:206,1:206:7298:1:36:0,-59.6646,-639.364
chr11	30978707	.	T	C	15239.1	PASS	AB=0.489216;ABP=4.93047;AC=49;AF=0.263441;AN=186;AO=937;CIGAR=1X;DP=3921;DPB=3921;DPRA=0.99839;EPP=2037.68;EPPR=6385.32;GTI=2;LEN=1;MEANALT=1.01887;MQM=59.889;MQMR=59.9571;NS=93;NUMALT=1;ODDS=1.05492;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33483;QR=106763;RO=2983;RPL=0;RPP=2037.68;RPPR=6385.32;RPR=937;RUN=1;SAF=0;SAP=2037.68;SAR=937;SRF=0;SRP=6480.51;SRR=2983;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:42:23,19:23:809:19:684:-49.2471,0,-60.485	0/1:59:35,24:35:1248:24:856:-59.6003,0,-94.8641	0/1:60:32,28:32:1152:28:1004:-72.6141,0,-85.9283	0/1:39:23,16:23:824:16:576:-40.4348,0,-62.7431	0/1:26:17,9:17:612:9:324:-21.6791,0,-47.5867	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:75:36,39:36:1288:39:1385:-102.37,0,-93.6463	0/1:42:28,14:28:1008:14:504:-33.0548,0,-78.3931	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:4:3,1:3:104:1:36:-2.3873,0,-8.49869	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:21:10,11:10:351:11:396:-29.6602,0,-25.605	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:25:24,1:24:851:1:36:0,-3.92747,-73.3112	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	0/1:13:6,7:6:216:7:243:-18.2941,0,-15.8771	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:96:96,0:96:3433:0:0:0,-28.8989,-309.076	0/1:38:18,20:18:636:20:716:-53.3286,0,-46.1289	0/0:138:138,0:138:4925:0:0:0,-41.5421,-443.401	0/1:52:27,25:27:972:25:900:-65.6675,0,-72.1443	0/0:80:78,2:78:2808:2:72:0,-17.2457,-246.122	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818	0/1:155:70,85:70:2512:85:3039:-227.056,0,-179.671	0/1:92:46,46:46:1639:46:1648:-120.913,0,-120.103	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:107:60,47:60:2148:47:1692:-120.357,0,-161.377	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:59:58,1:58:2080:1:36:0,-14.1625,-183.866	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:12:5,7:5:180:7:241:-18.4123,0,-12.9397	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:102:101,1:101:3573:1:36:0,-27.1068,-318.177	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	.:.:.:.:.:.:.:.	0/1:47:29,18:29:1044:18:640:-43.7809,0,-80.1182	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:127:127,0:127:4553:0:0:0,-38.2308,-409.929	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.813	0/0:112:112,0:112:4016:0:0:0,-33.7154,-361.628	0/1:43:28,15:28:1008:15:540:-35.986,0,-78.0921	0/0:95:95,0:95:3380:0:0:0,-28.5978,-304.238	0/1:66:34,32:34:1216:32:1125:-81.5251,0,-89.8786	0/1:39:24,15:24:860:15:540:-37.1964,0,-65.9817	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.891	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.887	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.859	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.226	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:19:11,8:11:396:8:280:-19.8197,0,-30.2632	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:107:35,72:35:1252:72:2572:-199.51,0,-80.774	0/1:82:42,40:42:1504:40:1411:-102.602,0,-110.97	0/1:22:10,12:10:360:12:432:-32.5985,0,-26.1216	0/1:42:18,24:18:644:24:864:-65.4393,0,-45.6473	0/0:86:86,0:86:3072:0:0:0,-25.8886,-276.709	0/0:65:64,1:64:2285:1:36:0,-15.9687,-202.312	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:21:11,10:11:381:10:356:-26.0596,0,-28.299	0/1:33:17,16:17:612:16:567:-41.4267,0,-45.4794	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/1:21:12,9:12:432:9:324:-23.1138,0,-32.8996	0/1:71:48,22:48:1720:22:792:-50.1737,0,-133.654	0/0:54:54,0:54:1910:0:0:0,-16.2556,-172.174	0/1:55:27,28:27:972:28:999:-73.6679,0,-71.2403	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:52:29,23:29:1044:23:828:-59.1906,0,-78.6212	0/1:45:18,27:18:640:27:960:-73.1699,0,-44.383	0/1:86:45,41:45:1616:41:1472:-106.888,0,-119.824	0/1:48:23,25:23:820:25:888:-65.7896,0,-59.6731	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.805	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:16:9,7:9:324:7:244:-17.4829,0,-24.6894	0/1:26:10,16:10:356:16:576:-44.3482,0,-24.5545	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/1:20:4,16:4:144:16:565:-45.159,0,-7.29302	0/0:55:55,0:55:1953:0:0:0,-16.5566,-176.044	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441
chr11	30979968	.	T	C	96841.8	PASS	AB=0.585789;ABP=187.435;AC=137;AF=0.728723;AN=188;AO=4694;CIGAR=1X;DP=5900;DPB=5900;DPRA=31.7097;EPP=10195.9;EPPR=2608.78;GTI=5;LEN=1;MEANALT=1.06452;MQM=47.4838;MQMR=38;NS=94;NUMALT=1;ODDS=0.0193817;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=166996;QR=42139;RO=1200;RPL=0;RPP=10195.9;RPPR=2608.78;RPR=4694;RUN=1;SAF=0;SAP=10195.9;SAR=4694;SRF=0;SRP=2608.78;SRR=1200;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:896:-80.5338,-7.52575,0	0/1:49:20,29:20:695:29:1040:-78.3744,0,-42.6476	0/1:145:27,118:27:960:118:4201:-330.102,0,-32.6639	0/1:205:86,119:86:3012:119:4226:-314.357,0,-195.446	0/1:24:10,14:10:348:14:496:-37.1688,0,-21.0094	0/1:17:9,8:9:307:8:284:-20.6579,0,-20.4693	1/1:79:0,79:0:0:79:2785:-246.685,-23.7814,0	0/1:60:26,34:26:911:34:1216:-90.8143,0,-55.9229	0/1:49:17,32:17:591:32:1152:-88.3832,0,-34.3956	1/1:65:0,65:0:0:65:2323:-207.162,-19.567,0	0/1:27:13,14:13:460:14:496:-36.4867,0,-31.7214	1/1:54:0,54:0:0:54:1932:-173.263,-16.2556,0	0/1:45:21,24:21:744:24:860:-63.7627,0,-47.5267	1/1:26:0,26:0:0:26:928:-82.5836,-7.82678,0	1/1:46:0,46:0:0:46:1633:-145.962,-13.8474,0	1/1:43:0,43:0:0:43:1534:-136.708,-12.9443,0	0/1:10:2,8:2:68:8:288:-23.1364,0,-2.94602	0/1:21:7,14:7:248:14:500:-38.7773,0,-14.2504	1/1:18:0,18:0:0:18:648:-58.3339,-5.41854,0	1/1:102:0,102:0:0:102:3641:-322.256,-30.7051,0	0/1:98:38,60:38:1344:60:2124:-160.555,0,-83.4979	1/1:60:0,60:0:0:60:2120:-189.386,-18.0618,0	0/1:64:32,32:32:1128:32:1121:-80.7789,0,-76.4727	1/1:55:1,54:1:32:54:1914:-166.342,-13.4759,0	1/1:74:0,74:0:0:74:2632:-233.846,-22.2762,0	0/1:135:48,87:48:1687:87:3062:-232.219,0,-105.079	0/1:148:55,93:55:1916:93:3304:-250.37,0,-117.724	0/1:19:5,14:5:168:14:500:-39.2066,0,-8.94017	0/1:152:54,98:54:1881:98:3491:-266.191,0,-119.075	1/1:121:1,119:1:36:119:4188:-370.645,-33.0497,0	1/1:85:1,84:1:36:84:2985:-260.638,-22.1639,0	0/1:5:2,3:2:68:3:108:-8.50047,0,-4.71304	0/1:11:9,2:9:316:2:72:-3.47819,0,-23.6812	1/1:12:0,12:0:0:12:432:-38.7103,-3.61236,0	0/1:12:4,8:4:140:8:288:-22.5126,0,-8.19261	1/1:13:0,13:0:0:13:451:-40.73,-3.91339,0	1/1:141:0,141:0:0:141:4972:-443.518,-42.4452,0	1/1:85:0,85:0:0:85:3023:-270.418,-25.5876,0	0/1:16:9,7:9:315:7:252:-18.0876,0,-20.4512	1/1:1:0,1:0:0:1:36:-3.57343,-0.30103,0	0/1:79:42,37:42:1471:37:1328:-94.4157,0,-99.9552	1/1:11:0,11:0:0:11:392:-35.1356,-3.31133,0	1/1:61:0,61:0:0:61:2161:-193.487,-18.3628,0	1/1:33:0,33:0:0:33:1180:-105.624,-9.93399,0	1/1:28:0,28:0:0:28:987:-87.7281,-8.42884,0	1/1:83:0,83:0:0:83:2953:-263.878,-24.9855,0	0/1:59:22,37:22:784:37:1312:-99.4815,0,-44.8594	1/1:103:1,102:1:36:102:3648:-320.812,-27.5825,0	0/1:63:26,37:26:903:37:1324:-99.48,0,-56.8342	0/1:68:25,43:25:865:43:1536:-116.298,0,-54.3331	1/1:173:0,173:0:0:173:6183:-551.573,-52.0782,0	1/1:10:0,10:0:0:10:360:-32.458,-3.0103,0	1/1:130:0,130:0:0:130:4643:-413.977,-39.1339,0	1/1:80:0,79:0:0:79:2836:-252.96,-23.7814,0	1/1:9:0,9:0:0:9:316:-28.5523,-2.70927,0	1/1:91:0,91:0:0:91:3230:-286.894,-27.3937,0	1/1:12:0,12:0:0:12:432:-38.7629,-3.61236,0	0/1:4:1,3:1:36:3:108:-8.81643,0,-2.27658	1/1:14:0,14:0:0:14:500:-45.0897,-4.21442,0	0/1:37:12,25:12:419:25:896:-69.1193,0,-24.6984	1/1:68:0,68:0:0:68:2414:-215.601,-20.47,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.67078	0/1:194:83,111:83:2932:111:3945:-292.962,0,-196.609	0/1:88:36,51:36:1228:51:1824:-135.484,0,-78.5016	0/1:81:40,41:40:1413:41:1447:-104.852,0,-94.597	0/1:41:13,28:13:468:28:995:-76.6559,0,-28.014	1/1:163:0,163:0:0:163:5785:-515.248,-49.0679,0	1/1:139:1,138:1:32:138:4894:-432.226,-38.6439,0	0/1:16:11,5:11:375:5:176:-11.219,0,-26.8583	0/1:47:22,25:22:776:25:892:-65.4511,0,-49.5343	0/1:41:20,21:20:708:21:756:-55.3119,0,-49.9177	0/1:19:14,5:14:500:5:180:-10.6939,0,-37.6442	1/1:94:0,94:0:0:94:3349:-298.911,-28.2968,0	0/1:55:35,20:35:1228:20:701:-46.5336,0,-84.4149	0/1:87:29,58:29:1002:58:2076:-159.283,0,-58.3988	1/1:229:0,227:0:0:227:8057:-716.808,-68.3338,0	0/1:50:19,31:19:672:31:1091:-82.6595,0,-40.0673	1/1:47:0,47:0:0:47:1668:-149.272,-14.1484,0	0/1:8:5,3:5:176:3:108:-7.61231,0,-12.3194	0/1:75:21,54:21:744:54:1924:-149.335,0,-40.6145	0/1:66:33,33:33:1171:33:1180:-85.4872,0,-76.103	0/1:144:42,101:42:1475:101:3591:-275.999,0,-82.3989	0/1:47:24,23:24:852:23:820:-59.2583,0,-59.253	0/1:33:16,17:16:567:17:612:-44.4054,0,-39.2764	1/1:24:0,24:0:0:24:856:-76.7268,-7.22472,0	1/1:74:0,74:0:0:74:2633:-234.416,-22.2762,0	1/1:12:0,12:0:0:12:432:-38.9941,-3.61236,0	0/1:41:26,15:26:911:15:540:-36.0389,0,-62.2851	0/1:32:16,16:16:568:16:576:-42.2592,0,-36.4756	0/1:11:4,7:4:144:7:252:-19.2594,0,-9.06941	0/1:38:23,15:23:812:15:532:-36.3128,0,-53.9509	0/1:49:39,10:39:1388:10:360:-17.6053,0,-103.597	1/1:158:0,158:0:0:158:5636:-501.324,-47.5627,0	1/1:62:0,62:0:0:62:2215:-197.455,-18.6639,0
chr11	31004562	.	AAA	GAA,GAT	212038	PASS	AB=0.499808,0.49636;ABP=3.01196,3.61099;AC=140,48;AF=0.744681,0.255319;AN=188;AO=7426,2631;CIGAR=1X2M,1X1M1X;DP=10084;DPB=10084;DPRA=0,1.34756;EPP=16128.4,5716.15;EPPR=0;GTI=0;LEN=1,3;MEANALT=1.8617,2.34483;MQM=59.9867,59.9194;MQMR=0;NS=94;NUMALT=2;ODDS=3.42599;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=262896,92694;QR=0;RO=0;RPL=0,0;RPP=16128.4,5716.15;RPPR=0;RPR=7426,2631;RUN=1,1;SAF=0,0;SAP=16128.4,5716.15;SAR=7426,2631;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53,0:0:0:53,0:1869,0:-168.487,-15.9546,0,-168.487,-15.9546,-168.487	1/2:182:0,73,108:0:0:73,108:2606,3814:-523.067,-310.609,-288.634,-212.473,0,-179.961	1/2:167:0,92,75:0:0:92,75:3287,2635:-482.82,-214.819,-187.124,-268.355,0,-245.777	1/2:282:0,146,135:0:0:146,135:5134,4767:-806.09,-388.186,-344.236,-417.897,0,-377.258	1/2:84:0,50,34:0:0:50,34:1773,1178:-240.535,-96.0848,-81.0333,-144.799,0,-134.564	1/2:48:0,22,26:0:0:22,26:777,929:-139.375,-76.1019,-69.4793,-63.6277,0,-55.8009	1/1:140:0,140,0:0:0:140,0:5011,0:-451.136,-42.1442,0,-451.136,-42.1442,-451.136	1/2:210:0,109,101:0:0:109,101:3875,3527:-603.019,-287.236,-254.424,-316.135,0,-285.731	1/2:101:0,67,34:0:0:67,34:2368,1212:-292.004,-99.1518,-78.9828,-193.208,0,-182.973	1/1:97:0,97,0:0:0:97,0:3463,0:-311.879,-29.1999,0,-311.879,-29.1999,-311.879	1/2:23:0,10,13:0:0:10,13:360,454:-66.6572,-37.2783,-34.268,-29.734,0,-25.8206	1/1:56:0,56,0:0:0:56,0:1930,0:-173.973,-16.8577,0,-173.973,-16.8577,-173.973	1/2:60:0,33,27:0:0:33,27:1180,939:-172.916,-76.6941,-66.7601,-96.5741,0,-88.4462	1/1:69:0,69,0:0:0:69,0:2444,0:-220.214,-20.7711,0,-220.214,-20.7711,-220.214	1/1:58:0,58,0:0:0:58,0:2067,0:-186.3,-17.4597,0,-186.3,-17.4597,-186.3	1/1:42:0,41,0:0:0:41,0:1453,0:-130.704,-12.3422,0,-130.704,-12.3422,-130.704	1/2:53:0,31,22:0:0:31,22:1086,775:-151.813,-63.4474,-54.1154,-88.7169,0,-82.0942	1/2:60:0,32,28:0:0:32,28:1140,971:-172.195,-79.27,-69.6371,-93.2762,0,-84.8474	1/1:23:0,23,0:0:0:23,0:816,0:-73.7617,-6.92369,0,-73.7617,-6.92369,-73.7617	1/1:212:0,209,3:0:0:209,3:7409,108:-666.48,-62.9153,0,-657.667,-53.7432,-656.764	1/2:125:0,65,60:0:0:65,60:2284,2097:-356.837,-170.936,-151.369,-186.252,0,-168.19	1/1:160:0,160,0:0:0:160,0:5672,0:-510.603,-48.1648,0,-510.603,-48.1648,-510.603	1/2:101:0,49,52:0:0:49,52:1734,1859:-293.17,-151.934,-137.184,-141.592,0,-125.938	1/1:168:0,155,13:0:0:155,13:5497,463:-494.5,-46.6597,0,-456.762,-8.56588,-452.849	1/1:62:0,62,0:0:0:62,0:2177,0:-196.193,-18.6639,0,-196.193,-18.6639,-196.193	1/2:423:0,219,197:0:0:219,197:7737,6971:-1197.88,-567.808,-501.882,-630.095,0,-570.792	1/2:204:0,113,90:0:0:113,90:4027,3136:-583.267,-255.015,-220.999,-328.243,0,-301.151	1/2:31:0,19,12:0:0:19,12:680,426:-90.519,-35.0654,-29.3458,-55.8096,0,-52.1972	1/2:311:0,160,149:0:0:160,149:5722,5301:-898.634,-432.059,-383.894,-466.616,0,-421.763	1/1:222:0,206,15:0:0:206,15:7358,537:-661.911,-62.0122,0,-618.119,-18.222,-613.604	1/1:108:0,106,2:0:0:106,2:3782,64:-340.255,-31.9092,0,-335.1,-26.4331,-334.497	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/2:19:0,6,13:0:0:6,13:216,449:-54.4535,-36.8244,-35.0182,-17.9843,0,-14.0709	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	1/2:2:0,1,1:0:0:1,1:36,34:-6.04527,-3.09788,-2.79685,-3.29724,0,-2.99621	1/1:6:0,6,0:0:0:6,0:207,0:-18.9669,-1.80618,0,-18.9669,-1.80618,-18.9669	1/1:182:0,182,0:0:0:182,0:6441,0:-579.78,-54.7875,0,-579.78,-54.7875,-579.78	1/1:352:0,351,1:0:0:351,1:12438,34:-1118.93,-105.662,0,-1116.17,-102.564,-1115.87	1/2:41:0,17,24:0:0:17,24:590,840:-116.652,-68.6933,-63.5758,-48.3067,0,-41.0819	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:201:0,87,114:0:0:87,114:3083,4041:-580.715,-329.562,-303.372,-251.507,0,-217.19	1/1:21:0,21,0:0:0:21,0:740,0:-66.9234,-6.32163,0,-66.9234,-6.32163,-66.9234	1/1:291:0,291,0:0:0:291,0:10248,0:-922.255,-87.5997,0,-922.255,-87.5997,-922.255	1/1:49:0,47,1:0:0:47,1:1675,28:-150.716,-14.1484,0,-148.499,-11.9696,-148.198	1/1:39:0,39,0:0:0:39,0:1326,0:-119.632,-11.7402,0,-119.632,-11.7402,-119.632	1/1:111:0,110,0:0:0:110,0:3888,0:-349.885,-33.1133,0,-349.885,-33.1133,-349.885	1/2:138:0,57,80:0:0:57,80:1992,2826:-392.133,-230.093,-212.935,-162.031,0,-137.949	1/1:219:0,219,0:0:0:219,0:7761,0:-698.525,-65.9256,0,-698.525,-65.9256,-698.525	1/2:118:0,61,57:0:0:61,57:2148,1994:-337.445,-162.573,-144.21,-175.223,0,-158.064	1/2:159:0,66,93:0:0:66,93:2328,3294:-458.238,-268.68,-248.812,-189.91,0,-161.915	1/1:233:0,233,0:0:0:233,0:8252,0:-742.688,-70.14,0,-742.688,-70.14,-742.688	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:165:0,165,0:0:0:165,0:5834,0:-525.176,-49.67,0,-525.176,-49.67,-525.176	1/1:39:0,39,0:0:0:39,0:1396,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:145:0,145,0:0:0:145,0:5136,0:-462.383,-43.6494,0,-462.383,-43.6494,-462.383	1/1:27:0,27,0:0:0:27,0:960,0:-86.7163,-8.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chr11	31004725	.	TGTG	CGTA,TGTA	152606	PASS	AB=0.522684,0.471339;ABP=19.4624,29.2738;AC=138,50;AF=0.734043,0.265957;AN=188;AO=5662,1749;CIGAR=1X2M1X,3M1X;DP=7457;DPB=7457;DPRA=40.0806,0.986769;EPP=12289.2,3800.92;EPPR=5.18177;GTI=2;LEN=4,1;MEANALT=2.03226,2.41818;MQM=59.408,59.8725;MQMR=60;NS=94;NUMALT=2;ODDS=2.46487;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=195521,61697;QR=36;RO=1;RPL=1,0;RPP=12289.2,3800.92;RPPR=5.18177;RPR=5661,1749;RUN=1,1;SAF=0,0;SAP=12297.9,3800.92;SAR=5662,1749;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22,0:0:0:22,0:755,0:-68.2377,-6.62266,0,-68.2377,-6.62266,-68.2377	1/2:141:0,71,69:0:0:71,69:2424,2429:-394.461,-197.86,-176.487,-196.715,0,-175.944	1/2:71:0,35,36:0:0:35,36:1235,1269:-204.212,-103.655,-93.119,-100.91,0,-90.0726	1/2:101:0,55,45:0:0:55,45:1910,1571:-282.973,-127.848,-111.292,-155.191,0,-141.645	1/2:65:0,34,31:0:0:34,31:1186,1108:-187.138,-90.6991,-80.464,-96.7917,0,-87.4597	1/2:13:0,6,7:0:0:6,7:206,252:-37.6407,-20.9217,-19.1156,-17.0698,0,-14.9626	1/1:106:0,105,1:0:0:105,1:3626,36:-326.144,-31.6082,0,-323.207,-28.3109,-322.906	1/2:162:0,87,73:0:0:87,73:2960,2536:-446.248,-206.163,-179.973,-240.109,0,-218.133	1/2:36:0,19,17:0:0:19,17:649,600:-101.874,-49.2117,-43.4921,-53.0093,0,-47.8918	1/1:87:0,87,0:0:0:87,0:3027,0:-272.647,-26.1896,0,-272.647,-26.1896,-272.647	1/2:52:0,27,24:0:0:27,24:904,856:-142.984,-69.8534,-61.7256,-73.1931,0,-65.9684	1/1:55:0,55,0:0:0:55,0:1925,0:-173.515,-16.5567,0,-173.515,-16.5567,-173.515	1/2:68:0,33,34:0:0:33,34:1106,1197:-186.999,-97.4386,-87.5046,-89.5446,0,-79.3096	1/1:80:1,78,0:1:36:78,0:2684,0:-238.213,-20.4976,0,-238.514,-23.4803,-241.451	1/1:59:0,59,0:0:0:59,0:2023,0:-182.324,-17.7608,0,-182.324,-17.7608,-182.324	1/1:46:0,45,0:0:0:45,0:1554,0:-139.909,-13.5464,0,-139.909,-13.5464,-139.909	1/2:40:0,27,13:0:0:27,13:938,450:-112.802,-36.9151,-28.7873,-76.2331,0,-72.3197	1/2:48:0,28,20:0:0:28,20:963,711:-136.473,-58.295,-49.8662,-78.5283,0,-72.5077	1/1:31:0,31,0:0:0:31,0:1077,0:-97.129,-9.33193,0,-97.129,-9.33193,-97.129	1/1:159:0,159,0:0:0:159,0:5502,0:-495.223,-47.8638,0,-495.223,-47.8638,-495.223	1/2:112:0,53,59:0:0:53,59:1842,2103:-320.918,-171.778,-155.823,-149.491,0,-131.731	1/1:93:0,93,0:0:0:93,0:3237,0:-291.544,-27.9958,0,-291.544,-27.9958,-291.544	1/2:58:0,33,25:0:0:33,25:1133,892:-165.029,-73.0734,-63.1394,-92.3068,0,-84.7811	1/1:94:0,91,3:0:0:91,3:3169,108:-285.011,-27.3937,0,-276.198,-18.2217,-275.295	1/1:29:0,28,0:0:0:28,0:973,0:-87.6446,-8.42884,0,-87.6446,-8.42884,-87.6446	1/2:265:0,154,109:0:0:154,109:5305,3824:-740.825,-311.126,-264.768,-429.687,0,-396.875	1/2:132:0,67,64:0:0:67,64:2332,2262:-373.934,-184.325,-164.156,-189.707,0,-170.442	1/2:37:0,22,15:0:0:22,15:775,536:-107.149,-44.0594,-37.4367,-63.4443,0,-58.9289	1/2:220:0,124,94:0:0:124,94:4342,3325:-624.123,-270.854,-233.526,-353.305,0,-325.008	1/1:69:0,64,4:0:0:64,4:2193,135:-197.248,-19.2659,0,-186.307,-8.34286,-185.103	1/1:93:0,91,0:0:0:91,0:3086,0:-277.677,-27.3937,0,-277.677,-27.3937,-277.677	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/2:33:0,26,7:0:0:26,7:895,252:-93.5006,-20.9217,-13.095,-72.9352,0,-70.828	1/1:2:0,2,0:0:0:2,0:71,0:-6.71217,-0.60206,0,-6.71217,-0.60206,-6.71217	1/2:16:0,6,10:0:0:6,10:214,352:-46.4438,-29.0079,-27.2017,-17.7905,0,-14.7802	1/1:3:0,3,0:0:0:3,0:101,0:-9.42313,-0.90309,0,-9.42313,-0.90309,-9.42313	1/1:196:0,194,0:0:0:194,0:6706,0:-603.327,-58.3998,0,-603.327,-58.3998,-603.327	1/1:158:0,157,1:0:0:157,1:5371,36:-483.154,-47.2617,0,-480.216,-43.9645,-479.915	1/2:64:0,34,29:0:0:34,29:1147,1012:-175.256,-82.444,-72.209,-92.939,0,-84.2091	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:60:0,34,25:0:0:34,25:1178,892:-168.487,-72.7672,-62.5322,-95.769,0,-88.2432	1/1:51:0,51,0:0:0:51,0:1756,0:-158.315,-15.3525,0,-158.315,-15.3525,-158.315	1/1:79:0,79,0:0:0:79,0:2689,0:-242.244,-23.7814,0,-242.244,-23.7814,-242.244	1/1:76:0,76,0:0:0:76,0:2628,0:-236.739,-22.8783,0,-236.739,-22.8783,-236.739	1/1:71:0,70,0:0:0:70,0:2399,0:-215.926,-21.0721,0,-215.926,-21.0721,-215.926	1/1:48:0,48,0:0:0:48,0:1651,0:-148.813,-14.4494,0,-148.813,-14.4494,-148.813	1/2:82:0,44,36:0:0:44,36:1522,1258:-226.037,-102.404,-89.1587,-123.705,0,-112.868	1/1:171:0,167,0:0:0:167,0:5782,0:-520.185,-50.272,0,-520.185,-50.272,-520.185	1/2:88:0,39,49:0:0:39,49:1366,1743:-253.456,-142.403,-130.663,-111.406,0,-96.6551	1/2:85:0,40,45:0:0:40,45:1387,1573:-241.045,-128.309,-116.268,-113.084,0,-99.5375	1/1:106:0,106,0:0:0:106,0:3713,0:-334.104,-31.9092,0,-334.104,-31.9092,-334.104	1/1:11:0,11,0:0:0:11,0:372,0:-33.8048,-3.31133,0,-33.8048,-3.31133,-33.8048	1/1:97:0,95,0:0:0:95,0:3315,0:-298.23,-28.5979,0,-298.23,-28.5979,-298.23	1/1:29:0,28,0:0:0:28,0:936,0:-84.2837,-8.42884,0,-84.2837,-8.42884,-84.2837	1/1:24:0,24,0:0:0:24,0:829,0:-74.7323,-7.22472,0,-74.7323,-7.22472,-74.7323	1/1:113:0,112,0:0:0:112,0:3847,0:-346.157,-33.7154,0,-346.157,-33.7154,-346.157	1/1:33:0,33,0:0:0:33,0:1134,0:-102.348,-9.93399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chr11	31048005	.	G	A	68393	PASS	AB=0.334196;ABP=926.152;AC=135;AF=0.718085;AN=188;AO=3502;CIGAR=1X;DP=6093;DPB=6093;DPRA=22.0543;EPP=7598.82;EPPR=5618.44;GTI=17;LEN=1;MEANALT=1.01087;MQM=59.9663;MQMR=59.9977;NS=94;NUMALT=1;ODDS=0.324807;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125340;QR=92468;RO=2590;RPL=3498;RPP=7572.8;RPPR=5592.43;RPR=4;RUN=1;SAF=3499;SAP=7581.47;SAR=3;SRF=2587;SRP=5601.1;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:91:71,20:71:2521:20:720:-37.735,0,-199.747	0/1:105:72,33:72:2588:33:1184:-75.2602,0,-201.56	0/1:198:135,63:135:4828:63:2249:-143.068,0,-375.069	0/1:49:35,14:35:1260:14:500:-30.5857,0,-98.955	0/1:30:27,3:27:968:3:108:-1.04427,0,-78.4065	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	0/1:117:81,36:81:2874:36:1283:-80.5521,0,-223.674	0/1:54:46,8:46:1652:8:284:-9.64773,0,-132.713	1/1:69:0,69:0:0:69:2468:-222.372,-20.7711,0	0/1:32:16,16:16:576:16:576:-42.542,0,-42.542	1/1:66:1,65:1:36:65:2316:-205.101,-16.2697,0	0/1:58:28,30:28:1004:30:1080:-80.0535,0,-73.2161	1/1:38:0,38:0:0:38:1352:-121.98,-11.4391,0	1/1:42:0,42:0:0:42:1501:-135.383,-12.6433,0	1/1:44:1,43:1:36:43:1544:-135.655,-9.64705,0	0/1:25:17,8:17:604:8:284:-18.3776,0,-47.1649	0/1:21:17,4:17:608:4:144:-6.99199,0,-48.7304	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:66:0,66:0:0:66:2361:-212.747,-19.868,0	0/1:103:66,37:66:2341:37:1328:-88.8161,0,-179.942	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	0/1:96:70,26:70:2516:26:936:-55.6606,0,-197.793	0/1:43:6,37:6:216:37:1332:-107.238,0,-6.84622	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:304:232,72:232:8245:72:2573:-140.305,0,-650.547	0/1:149:106,43:106:3799:43:1540:-94.039,0,-297.253	0/1:28:14,14:14:489:14:504:-37.2693,0,-35.9101	0/1:230:163,67:163:5836:67:2412:-148.099,0,-456.115	0/1:43:4,39:4:144:39:1400:-113.355,0,-0.369327	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:24:14,10:14:500:10:360:-25.5196,0,-38.1115	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:163:0,163:0:0:163:5822:-524.091,-49.0679,0	1/1:69:1,68:1:36:68:2428:-215.177,-17.1728,0	0/1:24:13,11:13:468:11:392:-28.3953,0,-35.2349	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:153:117,36:117:4200:36:1296:-70.8863,0,-332.122	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	0/1:102:66,36:66:2376:36:1280:-84.7982,0,-183.392	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	0/1:100:72,28:72:2569:28:1001:-60.3026,0,-201.355	0/1:96:62,34:62:2179:34:1220:-81.2079,0,-167.473	1/1:93:0,93:0:0:93:3302:-297.398,-27.9958,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:59:0,59:0:0:59:2115:-190.618,-17.7608,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:77:0,77:0:0:77:2772:-249.72,-23.1793,0	1/1:33:0,33:0:0:33:1171:-105.66,-9.93399,0	0/1:9:7,2:7:244:2:68:-3.74844,0,-19.5902	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:45:29,16:29:1040:16:568:-37.9055,0,-80.368	1/1:97:0,97:0:0:97:3473:-312.781,-29.1999,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:281:178,103:178:6376:103:3668:-245.719,0,-489.34	0/1:151:118,33:118:4205:33:1169:-60.0598,0,-333.175	0/1:61:40,21:40:1440:21:756:-50.0044,0,-111.535	0/1:54:38,16:38:1364:16:576:-35.9194,0,-106.805	1/1:83:0,83:0:0:83:2959:-266.524,-24.9855,0	1/1:83:2,81:2:72:81:2907:-255.028,-18.1488,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:52:42,10:42:1500:10:356:-16.7277,0,-119.641	0/1:49:33,16:33:1172:16:576:-37.4245,0,-91.037	0/1:25:6,19:6:216:19:671:-53.1907,0,-12.2648	1/1:32:0,32:0:0:32:1144:-103.269,-9.63296,0	0/1:55:14,41:14:500:41:1476:-116.58,0,-28.7795	0/1:126:85,40:85:3029:40:1440:-92.0553,0,-234.997	1/1:120:0,120:0:0:120:4300:-387.177,-36.1236,0	0/1:93:71,22:71:2526:22:792:-43.6099,0,-199.595	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:81:59,22:59:2095:22:784:-46.5005,0,-164.436	0/1:109:81,28:81:2900:28:1004:-57.8636,0,-228.424	1/1:96:1,95:1:36:95:3384:-301.041,-25.3006,0	0/1:66:43,23:43:1532:23:828:-54.9761,0,-118.305	0/1:53:18,35:18:644:35:1237:-95.6777,0,-42.336	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:91:3,88:3:104:88:3156:-274.561,-17.6909,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:63:35,28:35:1248:28:1008:-72.0715,0,-93.66	0/1:47:30,17:30:1052:17:608:-40.9036,0,-80.8393	0/1:22:12,10:12:424:10:360:-26.1216,0,-31.8738	0/1:69:34,35:34:1204:35:1241:-91.2214,0,-87.8948	0/1:53:36,17:36:1284:17:612:-39.4588,0,-99.9088	1/1:130:1,129:1:36:129:4615:-411.915,-35.5356,0	1/1:74:1,73:1:36:73:2602:-230.829,-18.6779,0
chr11	31048120	.	CTTG	ATTG,ATTC	110631	PASS	AB=0.34724,0.64931;ABP=649.191,620.33;AC=136,50;AF=0.731183,0.268817;AN=186;AO=3190,2095;CIGAR=1X3M,1X2M1X;DP=5306;DPB=5306;DPRA=4.1087,1.34122;EPP=6930.01,4552.24;EPPR=0;GTI=10;LEN=1,4;MEANALT=1.80435,2.2;MQM=59.5969,59.4191;MQMR=0;NS=93;NUMALT=2;ODDS=8441.54;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=114151,73924;QR=0;RO=0;RPL=3190,2095;RPP=6930.01,4552.24;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=6930.01,4552.24;SAR=3190,2095;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19,0:0:0:19,0:671,0:-60.6799,-5.71957,0,-60.6799,-5.71957,-60.6799	1/2:39:0,17,22:0:0:17,22:608,770:-112.574,-62.9972,-57.8796,-49.9312,0,-43.3086	1/2:121:0,30,90:0:0:30,90:1080,3163:-345.194,-257.078,-248.047,-88.1828,0,-61.0901	1/2:146:0,44,102:0:0:44,102:1580,3602:-422.431,-293.544,-280.298,-129.244,0,-98.5388	1/2:67:0,8,59:0:0:8,59:284,2070:-191.919,-168.778,-166.37,-23.4951,0,-5.73434	1/2:29:0,12,17:0:0:12,17:432,603:-84.7337,-49.4825,-45.8702,-35.6088,0,-30.4913	1/1:29:0,29,0:0:0:29,0:1034,0:-93.325,-8.72987,0,-93.325,-8.72987,-93.325	1/2:87:0,24,63:0:0:24,63:856,2223:-251.101,-181.32,-174.096,-70.1364,0,-51.1715	1/2:47:0,11,36:0:0:11,36:396,1260:-134.953,-102.769,-99.4572,-32.5407,0,-21.7036	1/1:63:0,63,0:0:0:63,0:2237,0:-201.588,-18.9649,0,-201.588,-18.9649,-201.588	1/2:41:0,15,25:0:0:15,25:540,883:-116.001,-71.9367,-67.4212,-44.1174,0,-36.5916	1/1:59:0,59,0:0:0:59,0:2110,0:-190.147,-17.7608,0,-190.147,-17.7608,-190.147	1/2:44:0,20,24:0:0:20,24:720,861:-129.3,-70.551,-64.5304,-59.1082,0,-51.8835	1/1:33:0,33,0:0:0:33,0:1188,0:-107.219,-9.93399,0,-107.219,-9.93399,-107.219	1/1:27:0,26,0:0:0:26,0:932,0:-83.9763,-7.82678,0,-83.9763,-7.82678,-83.9763	1/1:33:0,33,0:0:0:33,0:1184,0:-106.861,-9.93399,0,-106.861,-9.93399,-106.861	1/2:12:0,4,8:0:0:4,8:144,286:-35.4278,-23.6773,-22.4732,-12.1095,0,-9.70126	1/2:31:0,18,12:0:0:18,12:648,430:-87.9933,-35.1243,-29.7058,-52.923,0,-49.3107	1/1:11:0,11,0:0:0:11,0:396,0:-35.9541,-3.31133,0,-35.9541,-3.31133,-35.9541	1/1:61:0,59,2:0:0:59,2:2120,72:-190.703,-17.7608,0,-184.828,-11.5261,-184.226	1/2:76:0,27,49:0:0:27,49:964,1711:-218.03,-139.46,-131.333,-78.9235,0,-64.173	1/1:67:0,67,0:0:0:67,0:2393,0:-215.512,-20.169,0,-215.512,-20.169,-215.512	1/2:56:0,17,39:0:0:17,39:608,1398:-163.856,-114.279,-109.162,-49.9345,0,-38.1943	1/1:20:0,19,1:0:0:19,1:680,36:-61.1648,-5.71957,0,-58.2273,-2.42233,-57.9263	1/1:20:0,20,0:0:0:20,0:720,0:-65.116,-6.0206,0,-65.116,-6.0206,-65.116	1/2:219:0,59,157:0:0:59,157:2112,5502:-619.801,-447.583,-429.822,-172.268,0,-125.007	1/2:161:0,48,112:0:0:48,112:1724,3959:-462.997,-322.408,-307.958,-140.694,0,-106.979	1/2:25:0,12,13:0:0:12,13:432,464:-73.4254,-38.1841,-34.5718,-35.5996,0,-31.6862	1/2:158:0,53,105:0:0:53,105:1900,3729:-459.11,-304.146,-288.191,-155.321,0,-123.713	1/1:70:0,66,3:0:0:66,3:2346,108:-210.815,-19.868,0,-202.003,-10.9958,-201.1	1/1:58:0,58,0:0:0:58,0:2073,0:-186.836,-17.4597,0,-186.836,-17.4597,-186.836	1/2:11:0,1,10:0:0:1,10:36,353:-32.0359,-29.0979,-28.7968,-3.29724,0,-0.286945	2/2:14:0,0,14:0:0:0,14:0,487:-44.1395,-44.1395,-44.1395,-4.21442,-4.21442,0	.:.:.:.:.:.:.:.	1/2:10:0,1,9:0:0:1,9:36,322:-29.5526,-26.615,-26.314,-3.29724,0,-0.587975	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:123:0,123,0:0:0:123,0:4404,0:-396.522,-37.0267,0,-396.522,-37.0267,-396.522	1/1:61:0,61,0:0:0:61,0:2161,0:-194.72,-18.3628,0,-194.72,-18.3628,-194.72	1/2:37:0,21,16:0:0:21,16:741,569:-107.009,-46.6893,-40.3676,-60.6741,0,-55.8576	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:113:0,43,70:0:0:43,70:1530,2463:-325.309,-200.635,-187.691,-125.028,0,-103.956	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:62:0,62,0:0:0:62,0:2228,0:-200.723,-18.6639,0,-200.723,-18.6639,-200.723	1/1:28:0,28,0:0:0:28,0:1008,0:-91.034,-8.42884,0,-91.034,-8.42884,-91.034	1/1:35:0,35,0:0:0:35,0:1260,0:-113.701,-10.5361,0,-113.701,-10.5361,-113.701	1/1:38:0,37,0:0:0:37,0:1313,0:-118.208,-11.1381,0,-118.208,-11.1381,-118.208	1/2:89:0,18,71:0:0:18,71:648,2515:-257.727,-205.05,-199.632,-53.0344,0,-31.6612	1/1:81:0,81,0:0:0:81,0:2887,0:-259.695,-24.3834,0,-259.695,-24.3834,-259.695	1/2:63:0,17,46:0:0:17,46:597,1601:-179.111,-130.53,-125.412,-48.9314,0,-35.084	1/2:96:0,40,56:0:0:40,56:1428,1976:-277.62,-161.237,-149.196,-116.737,0,-99.8796	1/1:140:0,138,0:0:0:138,0:4948,0:-444.994,-41.5421,0,-444.994,-41.5421,-444.994	1/1:6:0,6,0:0:0:6,0:216,0:-19.7835,-1.80618,0,-19.7835,-1.80618,-19.7835	1/1:54:0,54,0:0:0:54,0:1940,0:-174.868,-16.2556,0,-174.868,-16.2556,-174.868	1/1:30:0,29,1:0:0:29,1:1044,35:-93.9258,-8.72987,0,-91.0893,-5.54442,-90.7883	1/1:11:0,11,0:0:0:11,0:396,0:-35.9663,-3.31133,0,-35.9663,-3.31133,-35.9663	1/1:41:0,41,0:0:0:41,0:1468,0:-132.399,-12.3422,0,-132.399,-12.3422,-132.399	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:9:0,3,6:0:0:3,6:108,212:-26.4331,-17.6186,-16.7155,-9.17208,0,-7.3659	1/1:16:0,16,0:0:0:16,0:561,0:-5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chr11	31048139	.	A	T	68662.1	PASS	AB=0.6262;ABP=651.389;AC=51;AF=0.271277;AN=188;AO=2974;CIGAR=1X;DP=7995;DPB=7995;DPRA=1.4078;EPP=6460.97;EPPR=10906;GTI=8;LEN=1;MEANALT=1;MQM=59.5467;MQMR=59.7516;NS=94;NUMALT=1;ODDS=0.352036;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106488;QR=179390;RO=5021;RPL=2073;RPP=1005.94;RPPR=792.37;RPR=901;RUN=1;SAF=901;SAP=1005.94;SAR=2073;SRF=1835;SRP=792.37;SRR=3186;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:45,1:45:1592:1:32:0,-10.6643,-140.387	0/1:45:21,24:21:752:24:864:-64.5358,0,-54.4067	0/1:187:61,126:61:2173:126:4524:-350.421,0,-139.534	0/1:205:70,135:70:2504:135:4821:-371.961,0,-163.901	0/1:103:23,80:23:824:80:2872:-227.665,0,-43.4772	0/1:36:14,22:14:504:22:788:-60.4077,0,-34.861	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.698	0/1:138:45,93:45:1596:93:3344:-259.546,0,-102.388	0/1:97:21,76:21:752:76:2716:-215.344,0,-38.8063	0/0:86:86,0:86:3067:0:0:0,-25.8886,-276.254	0/1:50:23,27:23:828:27:972:-72.7189,0,-59.7926	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.742	0/1:87:52,35:52:1853:35:1250:-86.5549,0,-140.858	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.649	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.613	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.993	0/1:24:9,15:9:324:15:536:-41.3501,0,-22.2811	0/1:42:22,20:22:788:20:716:-52.0793,0,-58.5933	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.0235	0/0:112:110,2:110:3924:2:72:0,-26.8786,-346.5	0/1:140:44,96:44:1568:96:3421:-265.88,0,-99.2371	0/0:92:92,0:92:3255:0:0:0,-27.6948,-292.483	0/1:126:49,77:49:1744:77:2760:-210.611,0,-119.315	0/1:41:35,6:35:1248:6:216:-7.44828,0,-100.278	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.5	0/1:322:95,227:95:3354:227:8102:-631.979,0,-205.131	0/1:257:90,167:90:3228:167:6000:-462.561,0,-213.327	0/1:37:16,21:16:572:21:756:-57.2291,0,-40.6661	0/1:199:72,127:72:2557:127:4541:-348.89,0,-170.473	0/0:77:74,3:74:2644:3:108:0,-13.1041,-227.744	0/0:79:78,1:78:2770:1:36:0,-20.1831,-245.938	0/1:14:3,11:3:108:11:396:-31.7679,0,-5.86075	1/1:14:0,14:0:0:14:504:-45.6579,-4.21442,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:16:4,12:4:140:12:432:-34.4047,0,-8.1281	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:191:188,3:188:6752:3:108:0,-47.4216,-597.669	0/0:96:96,0:96:3424:0:0:0,-28.8989,-308.344	0/1:52:31,21:31:1112:21:752:-52.3167,0,-84.7296	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:136:52,84:52:1860:84:2985:-227.781,0,-126.719	0/0:15:15,0:15:517:0:0:0,-4.51545,-46.8546	0/0:114:114,0:114:4057:0:0:0,-34.3174,-365.257	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.372	0/0:66:65,1:65:2309:1:36:0,-16.2697,-204.438	0/0:83:83,0:83:2964:0:0:0,-24.9855,-266.901	0/1:118:30,88:30:1076:88:3137:-246.813,0,-61.4328	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.813	0/1:101:30,71:30:1076:71:2552:-199.526,0,-66.6894	0/1:127:51,76:51:1816:76:2708:-205.671,0,-125.452	0/0:203:203,0:203:7241:0:0:0,-61.1091,-651.682	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.0219	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.403	0/0:39:38,1:38:1368:1:36:0,-8.15712,-119.838	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.719	0/0:77:77,0:77:2764:0:0:0,-23.1793,-248.987	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:76:17,59:17:608:59:2120:-168.19,0,-32.1737	0/0:134:132,2:132:4740:2:72:0,-33.5013,-419.913	0/1:7:2,5:2:72:5:176:-14.0638,0,-4.72951	0/1:257:141,116:141:5040:116:4160:-297.201,0,-376.322	0/1:208:82,126:82:2932:126:4509:-343.331,0,-201.491	0/1:65:23,42:23:824:42:1508:-116.13,0,-54.9118	0/1:62:16,46:16:576:46:1648:-129.908,0,-33.5088	0/0:81:79,2:79:2824:2:72:0,-17.5467,-247.56	0/0:104:102,2:102:3614:2:72:0,-24.4704,-318.619	0/1:18:4,14:4:144:14:504:-40.2796,0,-7.89508	0/1:66:31,35:31:1112:35:1260:-93.8371,0,-80.5234	0/1:58:29,29:29:1025:29:1040:-76.4451,0,-75.1	0/1:37:21,16:21:744:16:576:-41.0369,0,-56.1415	0/0:123:123,0:123:4356:0:0:0,-37.0267,-391.883	0/1:133:56,77:56:2004:77:2768:-208.803,0,-140.57	0/1:132:51,81:51:1828:81:2889:-220.498,0,-124.935	0/0:140:139,1:139:4972:1:36:0,-38.5459,-444.026	0/1:108:30,78:30:1068:78:2792:-218.967,0,-63.9208	0/0:103:103,0:103:3685:0:0:0,-31.0061,-331.83	0/1:26:10,16:10:356:16:576:-44.3478,0,-24.5545	0/1:98:32,66:32:1148:66:2360:-183.131,0,-74.1243	0/1:129:36,93:36:1269:93:3332:-261.226,0,-75.6779	0/0:107:105,2:105:3744:2:72:0,-25.3735,-330.248	0/1:72:37,35:37:1332:35:1260:-92.0305,0,-98.4945	0/1:86:37,49:37:1332:49:1737:-130.687,0,-94.2892	0/0:64:62,2:62:2224:2:72:0,-12.4292,-193.583	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.266	0/0:25:24,1:24:856:1:32:0,-4.32644,-74.1618	0/1:79:29,50:29:1044:50:1800:-138.46,0,-70.4771	0/1:72:28,44:28:1000:44:1572:-120.042,0,-68.6412	0/1:30:15,15:15:536:15:540:-39.9056,0,-39.5421	0/1:92:38,54:38:1364:54:1936:-146.777,0,-95.3343	0/1:66:21,45:21:756:45:1616:-125.862,0,-48.4945	0/0:105:104,1:104:3728:1:36:0,-28.0099,-332.103	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.368
chr11	31050939	.	C	T	122994	PASS	AB=0.468777;ABP=42.8772;AC=134;AF=0.72043;AN=186;AO=5967;CIGAR=1X;DP=8495;DPB=8495;DPRA=31.0952;EPP=12960.2;EPPR=5483.81;GTI=2;LEN=1;MEANALT=1.04396;MQM=59.994;MQMR=59.9913;NS=93;NUMALT=1;ODDS=0.0517463;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=213514;QR=89845;RO=2524;RPL=5967;RPP=12960.2;RPPR=5483.81;RPR=0;RUN=1;SAF=0;SAP=12960.2;SAR=5967;SRF=0;SRP=5483.81;SRR=2524;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:60:26,34:26:932:34:1224:-92.4052,0,-66.1371	0/1:128:78,50:78:2748:50:1792:-123.03,0,-209.025	0/1:214:110,104:110:3925:104:3717:-270.31,0,-289.022	0/1:30:9,21:9:324:21:756:-59.3363,0,-20.475	0/1:31:21,10:21:756:10:360:-23.4124,0,-59.0353	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	0/1:169:91,78:91:3222:78:2785:-200.015,0,-239.327	0/1:90:52,38:52:1849:38:1368:-96.3281,0,-139.595	1/1:91:0,91:0:0:91:3258:-293.441,-27.3937,0	0/1:71:41,30:41:1453:30:1068:-75.0584,0,-109.691	1/1:109:0,109:0:0:109:3897:-350.923,-32.8123,0	0/1:71:37,34:37:1328:34:1220:-88.7337,0,-98.4491	1/1:76:0,76:0:0:76:2728:-245.763,-22.8783,0	1/1:77:0,77:0:0:77:2767:-249.271,-23.1793,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:56:34,22:34:1212:22:788:-54.3871,0,-92.5286	0/1:33:13,20:13:468:20:720:-55.1948,0,-32.5257	1/1:31:0,31:0:0:31:1086:-98.045,-9.33193,0	1/1:108:0,108:0:0:108:3857:-347.325,-32.5112,0	0/1:187:81,106:81:2870:106:3793:-285.274,0,-202.243	1/1:95:0,95:0:0:95:3412:-307.293,-28.5979,0	0/1:163:106,57:106:3770:57:2048:-135.524,0,-290.43	0/1:58:9,49:9:324:49:1736:-139.063,0,-12.0461	1/1:72:0,72:0:0:72:2552:-229.928,-21.6742,0	0/1:219:124,95:124:4433:95:3390:-239.387,0,-333.214	0/1:209:122,87:122:4376:87:3132:-219.189,0,-331.098	0/1:49:25,24:25:896:24:864:-63.3321,0,-66.2099	0/1:221:116,105:116:4145:105:3780:-273.869,0,-306.705	1/1:171:7,164:7:248:164:5904:-508.801,-28.8119,0	1/1:96:2,93:2:72:93:3340:-293.98,-22.121,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:14:6,8:6:216:8:273:-20.6858,0,-15.5761	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:179:1,178:1:36:178:6396:-572.127,-50.2861,0	1/1:114:0,114:0:0:114:4073:-366.755,-34.3174,0	0/1:48:25,23:25:900:23:824:-60.0339,0,-66.8357	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:125:70,55:70:2470:55:1946:-137.783,0,-184.923	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:102:1,101:1:36:101:3597:-320.337,-27.1068,0	1/1:72:0,72:0:0:72:2561:-230.723,-21.6742,0	1/1:59:0,59:0:0:59:2097:-188.998,-17.7608,0	1/1:106:0,106:0:0:106:3797:-341.926,-31.9092,0	0/1:120:63,57:63:2229:57:2048:-148.468,0,-164.749	1/1:142:0,141:0:0:141:5076:-456.621,-42.4452,0	0/1:82:46,36:46:1652:36:1290:-91.719,0,-124.284	0/1:150:94,56:94:3330:56:2012:-136.199,0,-254.762	1/1:97:0,97:0:0:97:3463:-311.882,-29.1999,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:98:0,98:0:0:98:3504:-315.569,-29.5009,0	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	.:.:.:.:.:.:.:.	1/1:121:0,121:0:0:121:4279:-385.286,-36.4246,0	1/1:48:0,48:0:0:48:1719:-154.995,-14.4494,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:55:25,30:25:884:30:1080:-80.9566,0,-63.3217	1/1:113:0,113:0:0:113:4049:-364.595,-34.0164,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:198:93,104:93:3298:104:3714:-274.797,0,-237.375	0/1:150:84,66:84:2948:66:2367:-168.134,0,-220.396	0/1:98:50,47:50:1781:47:1681:-122.016,0,-131.011	0/1:52:24,28:24:864:28:991:-73.85,0,-62.429	1/1:133:0,133:0:0:133:4736:-426.398,-40.037,0	1/1:123:0,123:0:0:123:4388:-395.092,-37.0267,0	0/1:56:24,32:24:864:32:1144:-86.4118,0,-61.2249	0/1:51:27,24:27:930:24:856:-62.0086,0,-68.6557	0/1:52:27,25:27:957:25:880:-63.862,0,-70.7903	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	1/1:104:0,104:0:0:104:3723:-335.269,-31.3071,0	0/1:93:32,61:32:1152:61:2177:-168.191,0,-75.9944	0/1:206:113,93:113:4026:93:3297:-234.936,0,-300.514	1/1:164:0,164:0:0:164:5877:-529.037,-49.3689,0	0/1:149:98,51:98:3505:51:1799:-117.334,0,-270.805	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:105:59,46:59:2101:46:1656:-117.72,0,-157.75	0/1:152:66,86:66:2368:86:3047:-228.699,0,-167.621	1/1:194:5,189:5:180:189:6750:-591.02,-41.8478,0	0/1:85:41,44:41:1472:44:1584:-117.264,0,-107.189	0/1:96:58,38:58:2028:38:1368:-94.522,0,-153.887	1/1:52:0,52:0:0:52:1857:-167.408,-15.6536,0	1/1:149:2,147:2:72:147:5276:-468.138,-38.0167,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:105:54,51:54:1929:51:1827:-133.103,0,-142.268	0/1:94:49,45:49:1739:45:1620:-117.793,0,-128.497	0/1:39:24,15:24:841:15:540:-37.1964,0,-64.2662	0/1:158:75,83:75:2681:83:2984:-221.229,0,-193.971	0/1:73:52,21:52:1857:21:752:-46.0311,0,-145.433	1/1:146:0,146:0:0:146:5233:-471.107,-43.9504,0	1/1:108:1,107:1:36:107:3848:-342.916,-28.913,0
chr11	31062923	.	C	T	80484.7	PASS	AB=0.535556;ABP=30.3426;AC=135;AF=0.733696;AN=184;AO=3830;CIGAR=1X;DP=4988;DPB=4988;DPRA=54.8022;EPP=8319.75;EPPR=2515.4;GTI=4;LEN=1;MEANALT=1.01099;MQM=59.9728;MQMR=60;NS=92;NUMALT=1;ODDS=0.569056;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136729;QR=41001;RO=1157;RPL=3830;RPP=8319.75;RPPR=2515.4;RPR=0;RUN=1;SAF=3830;SAP=8319.75;SAR=0;SRF=1157;SRP=2515.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:19:10,9:10:356:9:320:-23.4228,0,-26.6617	0/1:42:13,29:13:445:29:1032:-80.5502,0,-27.7321	0/1:137:66,71:66:2297:71:2528:-186.529,0,-165.748	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	1/1:76:0,76:0:0:76:2719:-244.953,-22.8783,0	0/1:31:20,11:20:708:11:396:-26.6508,0,-54.7137	0/1:28:15,13:15:536:13:455:-32.8531,0,-40.146	1/1:106:0,106:0:0:106:3785:-340.848,-31.9092,0	0/1:24:12,12:12:428:12:419:-30.8171,0,-31.6341	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:79:41,38:41:1460:38:1360:-98.9192,0,-107.915	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	1/1:44:0,44:0:0:44:1570:-141.591,-13.2453,0	1/1:36:0,36:0:0:36:1283:-115.773,-10.8371,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:31:18,13:18:631:13:468:-33.1277,0,-47.7838	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	0/1:182:80,102:80:2827:102:3648:-273.735,0,-199.878	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:34:8,26:8:284:26:924:-73.2426,0,-15.6683	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:97:50,47:50:1788:47:1688:-123.007,0,-132.003	0/1:121:56,65:56:2004:65:2317:-172.364,0,-144.209	0/1:18:11,7:11:377:7:252:-17.6104,0,-28.8394	0/1:110:66,43:66:2355:43:1533:-105.122,0,-179.076	1/1:57:1,56:1:36:56:2012:-177.755,-13.5604,0	1/1:37:0,37:0:0:37:1319:-119.011,-11.1381,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	.:.:.:.:.:.:.:.	1/1:142:0,142:0:0:142:5064:-455.89,-42.7463,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	0/1:27:13,14:13:455:14:504:-37.5703,0,-33.1541	.:.:.:.:.:.:.:.	0/1:59:30,29:30:1076:29:1020:-74.3492,0,-79.3921	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:47:0,47:0:0:47:1636:-147.525,-14.1484,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	1/1:40:0,40:0:0:40:1425:-128.545,-12.0412,0	0/1:58:23,35:23:824:35:1245:-94.893,0,-57.0236	0/1:94:50,44:50:1784:44:1549:-111.403,0,-132.546	1/1:29:0,29:0:0:29:1040:-93.9111,-8.72987,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:24:0,24:0:0:24:849:-76.7196,-7.22472,0	1/1:38:0,38:0:0:38:1368:-123.413,-11.4391,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:92:0,92:0:0:92:3286:-295.958,-27.6948,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:32:19,13:19:672:13:464:-32.4645,0,-51.1739	1/1:51:0,51:0:0:51:1797:-162.01,-15.3525,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:268:133,135:133:4714:135:4840:-354.948,0,-343.745	0/1:78:24,54:24:864:54:1940:-151.396,0,-54.6022	0/1:59:22,37:22:773:37:1328:-102.061,0,-52.1287	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	1/1:73:0,73:0:0:73:2604:-234.609,-21.9752,0	1/1:74:0,74:0:0:74:2642:-238.019,-22.2762,0	0/1:10:5,5:5:171:5:180:-13.5418,0,-12.7152	0/1:28:9,19:9:320:19:684:-53.4615,0,-20.7135	0/1:26:16,10:16:567:10:356:-24.5545,0,-43.5339	0/1:16:5,11:5:167:11:388:-30.4409,0,-10.5419	1/1:35:0,35:0:0:35:1227:-110.731,-10.5361,0	0/1:282:119,163:119:4221:163:5813:-438.394,0,-295.179	0/1:29:14,15:14:485:15:536:-39.8449,0,-35.2471	1/1:161:0,161:0:0:161:5755:-518.057,-48.4658,0	0/1:27:6,21:6:212:21:756:-60.2394,0,-11.297	1/1:145:0,145:0:0:145:5157:-464.27,-43.6494,0	0/1:9:2,7:2:72:7:243:-19.4982,0,-4.12745	0/1:22:9,13:9:320:13:468:-35.837,0,-22.5197	0/1:38:10,28:10:360:28:1008:-79.5972,0,-21.3052	1/1:107:0,107:0:0:107:3835:-345.345,-32.2102,0	0/1:32:15,17:15:514:17:580:-42.8873,0,-36.9509	0/1:38:8,30:8:288:30:1080:-86.0741,0,-14.8283	1/1:34:0,34:0:0:34:1210:-109.204,-10.235,0	1/1:113:0,113:0:0:113:4020:-361.989,-34.0164,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:40:17,23:17:593:23:816:-61.7205,0,-41.6535	0/1:29:14,15:14:496:15:527:-39.0303,0,-36.2444	0/1:19:9,10:9:315:10:351:-26.2071,0,-22.9677	0/1:62:26,36:26:919:36:1282:-97.0186,0,-64.3623	0/1:64:52,12:52:1851:12:432:-19.9553,0,-147.603	1/1:412:0,412:0:0:412:14758:-1327.95,-124.024,0	1/1:91:0,91:0:0:91:3264:-293.98,-27.3937,0
chr11	31064140	.	ATT	GTG,GTT	147087	PASS	AB=0.501173,0.497487;ABP=3.08162,3.33777;AC=138,50;AF=0.734043,0.265957;AN=188;AO=8107,2981;CIGAR=1X1M1X,1X2M;DP=11100;DPB=11100;DPRA=0,1.17221;EPP=17607.1,6476.17;EPPR=0;GTI=1;LEN=3,1;MEANALT=1.68085,2.15094;MQM=27.087,30.4311;MQMR=0;NS=94;NUMALT=2;ODDS=3.41189;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=287950,90530;QR=0;RO=0;RPL=8107,2981;RPP=17607.1,6476.17;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=17607.1,6476.17;SAR=8107,2981;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51,0:0:0:51,0:1775,0:-107.549,-15.3525,0,-107.549,-15.3525,-107.549	1/2:145:0,71,74:0:0:71,74:2526,1773:-247.231,-117.513,-96.1399,-129.941,0,-107.665	1/2:184:0,77,107:0:0:77,107:2750,2588:-312.756,-172.1,-148.921,-140.882,0,-108.672	1/2:219:0,112,107:0:0:112,107:3993,3595:-518.305,-262.867,-229.152,-255.735,0,-223.525	1/2:66:0,15,51:0:0:15,51:535,1607:-143.234,-115.754,-111.238,-27.7287,0,-12.3761	1/2:88:0,40,48:0:0:40,48:1401,1148:-148.924,-76.1135,-64.0723,-73.034,0,-58.5845	1/1:201:0,201,0:0:0:201,0:7147,0:-515.008,-60.507,0,-515.008,-60.507,-515.008	1/2:277:0,164,113:0:0:164,113:5795,2707:-479.595,-179.409,-130.04,-300.406,0,-266.39	1/2:139:0,62,77:0:0:62,77:2199,1856:-237.136,-123.27,-104.606,-114.092,0,-90.9126	1/1:163:0,163,0:0:0:163,0:5784,0:-419.693,-49.0679,0,-419.693,-49.0679,-419.693	1/2:37:0,17,20:0:0:17,20:602,669:-87.0827,-49.0777,-43.9602,-38.2973,0,-32.2767	1/1:51:0,51,0:0:0:51,0:1820,0:-108.975,-15.3525,0,-108.975,-15.3525,-108.975	1/2:48:0,22,26:0:0:22,26:777,624:-81.3285,-41.5194,-34.8967,-40.0324,0,-32.2056	1/1:69:0,69,0:0:0:69,0:2448,0:-147.228,-20.7711,0,-147.228,-20.7711,-147.228	1/1:48:0,48,0:0:0:48,0:1719,0:-125.351,-14.4494,0,-125.351,-14.4494,-125.351	1/1:37:0,37,0:0:0:37,0:1313,0:-78.9073,-11.1381,0,-78.9073,-11.1381,-78.9073	1/2:58:0,30,28:0:0:30,28:1074,676:-100.086,-45.058,-36.0271,-55.2518,0,-46.8229	1/2:41:0,19,22:0:0:19,22:676,526:-69.7575,-34.9836,-29.264,-34.9978,0,-28.3751	1/1:23:0,23,0:0:0:23,0:812,0:-49.1737,-6.92369,0,-49.1737,-6.92369,-49.1737	1/1:319:0,319,0:0:0:319,0:11358,0:-824.472,-96.0286,0,-824.472,-96.0286,-824.472	1/2:186:0,105,80:0:0:105,80:3704,2528:-373.318,-181.825,-150.217,-191.52,0,-167.438	1/1:133:0,133,0:0:0:133,0:4740,0:-336.263,-40.037,0,-336.263,-40.037,-336.263	1/2:108:0,65,43:0:0:65,43:2326,1452:-255.484,-106.477,-86.91,-149.307,0,-136.363	1/2:77:0,68,9:0:0:68,9:2407,288:-144.993,-21.0634,-0.593368,-124.213,0,-121.504	1/1:102:0,102,0:0:0:102,0:3632,0:-217.62,-30.7051,0,-217.62,-30.7051,-217.62	1/2:481:0,254,225:0:0:254,225:9046,7992:-1156.67,-591.446,-514.985,-565.183,0,-497.451	1/2:247:0,133,114:0:0:133,114:4729,3576:-499.715,-256.943,-216.906,-243.034,0,-208.716	1/2:23:0,8,15:0:0:8,15:288,480:-49.5753,-34.9124,-32.5042,-14.9185,0,-10.4031	1/2:293:0,150,143:0:0:150,143:5344,5063:-707.73,-374.833,-329.678,-333.2,0,-290.153	1/1:251:0,241,10:0:0:241,10:8539,310:-513.262,-72.5482,0,-491.078,-50.0859,-488.068	1/1:179:0,178,0:0:0:178,0:6326,0:-456.739,-53.5833,0,-456.739,-53.5833,-456.739	1/2:8:0,3,5:0:0:3,5:108,149:-16.3142,-10.8202,-9.91712,-5.74279,0,-4.23764	1/2:11:0,2,9:0:0:2,9:70,288:-24.7107,-21.0634,-20.4613,-3.89362,0,-1.18435	1/1:11:0,11,0:0:0:11,0:383,0:-23.5915,-3.31133,0,-23.5915,-3.31133,-23.5915	1/2:9:0,4,5:0:0:4,5:144,120:-15.5068,-8.15409,-6.94997,-7.57794,0,-6.07279	1/1:7:0,7,0:0:0:7,0:252,0:-15.0165,-2.10721,0,-15.0165,-2.10721,-15.0165	1/1:147:0,147,0:0:0:147,0:5266,0:-372.408,-44.2514,0,-372.408,-44.2514,-372.408	1/1:248:0,248,0:0:0:248,0:8813,0:-528.241,-74.6554,0,-528.241,-74.6554,-528.241	1/2:26:0,12,14:0:0:12,14:430,336:-44.4745,-22.4535,-18.8411,-22.2457,0,-18.0313	1/1:3:0,3,0:0:0:3,0:108,0:-6.64588,-0.90309,0,-6.64588,-0.90309,-6.64588	1/2:184:0,92,92:0:0:92,92:3258,2857:-372.571,-204.812,-177.117,-168.017,0,-140.322	1/1:18:0,18,0:0:0:18,0:642,0:-38.6484,-5.41854,0,-38.6484,-5.41854,-38.6484	1/1:177:0,177,0:0:0:177,0:6244,0:-375.883,-53.2823,0,-375.883,-53.2823,-375.883	1/1:44:0,44,0:0:0:44,0:1571,0:-113.051,-13.2453,0,-113.051,-13.2453,-113.051	1/1:57:0,57,0:0:0:57,0:2015,0:-146.657,-17.1587,0,-146.657,-17.1587,-146.657	1/1:184:0,183,0:0:0:183,0:6488,0:-461.809,-55.0885,0,-461.809,-55.0885,-461.809	1/2:176:0,71,105:0:0:71,105:2499,2520:-296.374,-167.036,-145.663,-129.563,0,-97.9552	1/1:277:0,277,0:0:0:277,0:9825,0:-712.622,-83.3853,0,-712.622,-83.3853,-712.622	1/2:145:0,65,80:0:0:65,80:2294,2684:-344.145,-196.197,-176.63,-148.243,0,-124.16	1/2:151:0,73,78:0:0:73,78:2598,2597:-356.104,-189.51,-167.535,-166.889,0,-143.408	1/1:133:0,133,0:0:0:133,0:4736,0:-336.706,-40.037,0,-336.706,-40.037,-336.706	1/1:14:0,14,0:0:0:14,0:502,0:-36.3413,-4.21442,0,-36.3413,-4.21442,-36.3413	1/1:193:0,193,0:0:0:193,0:6863,0:-411.158,-58.0988,0,-411.158,-58.0988,-411.158	1/1:84:0,84,0:0:0:84,0:2985,0:-211.807,-25.2865,0,-211.807,-25.2865,-211.807	1/1:27:0,27,0:0:0:27,0:950,0:-57.4924,-8.12781,0,-57.4924,-8.12781,-57.4924	1/1:146:0,146,0:0:0:146,0:5172,0:-310.525,-43.9504,0,-310.525,-43.9504,-310.525	1/1:62:0,62,0:0:0:62,0:2201,0:-160.845,-18.6639,0,-160.845,-18.6639,-160.845	1/2:19:0,6,13:0:0:6,13:216,468:-48.4277,-35.0151,-33.2089,-13.7098,0,-9.79638	1/1:34:0,34,0:0:0:34,0:1220,0:-86.6082,-10.235,0,-86.6082,-10.235,-86.6082	1/2:144:0,70,74:0:0:70,74:2477,2316:-294.402,-166.413,-145.341,-128.248,0,-105.972	1/1:100:0,99,0:0:0:99,0:3544,0:-254.427,-29.802,0,-254.427,-29.802,-254.427	1/2:10:0,4,6:0:0:4,6:144,202:-24.3752,-15.1365,-13.9324,-9.53611,0,-7.72993	1/2:258:0,133,124:0:0:133,124:4750,4408:-622.051,-326.352,-286.315,-295.725,0,-258.397	1/2:365:0,155,208:0:0:155,208:5480,6995:-861.081,-511.357,-464.697,-349.775,0,-287.16	1/2:130:0,81,49:0:0:81,49:2893,1535:-258.853,-110.418,-86.0342,-148.701,0,-133.951	1/2:92:0,39,53:0:0:39,53:1371,1724:-211.932,-125.392,-113.652,-86.8258,0,-70.8712	1/1:245:0,245,0:0:0:245,0:8756,0:-632.613,-73.7524,0,-632.613,-73.7524,-632.613	1/1:166:0,166,0:0:0:166,0:5901,0:-424.857,-49.971,0,-424.857,-49.971,-424.857	1/2:19:0,5,14:0:0:5,14:180,448:-41.7661,-32.6042,-31.0991,-9.41309,0,-5.19867	1/2:119:0,63,56:0:0:63,56:2210,1342:-203.341,-89.0041,-70.0392,-114.558,0,-97.7005	1/2:99:0,36,63:0:0:36,63:1291,2226:-245.775,-165.247,-154.41,-80.8254,0,-61.8605	1/2:39:0,25,14:0:0:25,14:889,474:-90.8605,-34.9622,-27.4365,-56.1972,0,-51.9828	1/1:162:0,162,0:0:0:162,0:5719,0:-343.97,-48.7669,0,-343.97,-48.7669,-343.97	1/2:82:0,45,36:0:0:45,36:1593,864:-139.248,-57.0763,-43.53,-82.0625,0,-71.2254	1/2:306:0,189,117:0:0:189,117:6683,3691:-609.95,-265.817,-208.922,-344.4,0,-309.179	1/1:132:0,132,0:0:0:132,0:4691,0:-339.831,-39.736,0,-339.831,-39.736,-339.831	1/2:129:0,58,71:0:0:58,71:2078,1701:-218.603,-112.747,-95.2868,-106.08,0,-84.7071	1/1:125:0,124,1:0:0:124,1:4377,24:-264.227,-37.3277,0,-262.639,-35.5289,-262.338	1/2:20:0,5,15:0:0:5,15:173,360:-33.1642,-24.0423,-22.5372,-9.35143,0,-4.83598	1/2:142:0,66,76:0:0:66,76:2360,2384:-292.209,-171.389,-151.521,-121.079,0,-98.2005	1/2:136:0,73,63:0:0:73,63:2578,1505:-232.987,-99.7882,-77.813,-133.421,0,-114.456	1/1:343:0,341,1:0:0:341,1:12083,34:-874.282,-102.651,0,-871.794,-100.153,-871.493	1/2:101:0,46,54:0:0:46,54:1649,1787:-235.553,-130.042,-116.195,-105.515,0,-89.2591	1/2:47:0,23,24:0:0:23,24:826,797:-111.661,-58.6402,-51.7165,-53.317,0,-46.0923	1/1:51:0,51,0:0:0:51,0:1823,0:-133.013,-15.3525,0,-133.013,-15.3525,-133.013	1/1:82:0,82,0:0:0:82,0:2926,0:-209.096,-24.6845,0,-209.096,-24.6845,-209.096	1/1:32:0,32,0:0:0:32,0:1137,0:-68.4388,-9.63296,0,-68.4388,-9.63296,-68.4388	1/2:77:0,37,40:0:0:37,40:1326,970:-132.58,-64.7076,-53.5695,-68.0978,0,-56.0566	1/2:52:0,27,25:0:0:27,25:956,600:-89.2798,-39.9305,-31.8027,-49.572,0,-42.0463	1/2:40:0,19,21:0:0:19,21:682,659:-82.5824,-47.7503,-42.0308,-35.0918,0,-28.7702	1/2:83:0,41,42:0:0:41,42:1428,1308:-168.726,-93.9885,-81.6463,-74.9957,0,-62.3524	1/2:32:0,11,21:0:0:11,21:373,699:-75.9067,-51.2844,-47.9731,-24.9117,0,-18.5901	1/1:129:0,129,0:0:0:129,0:4599,0:-331.487,-38.8329,0,-331.487,-38.8329,-331.487	1/1:72:0,72,0:0:0:72,0:2566,0:-186.577,-21.6742,0,-186.577,-21.6742,-186.577
chr11	31112119	.	GAGGGGGT	GAGAGGGT,AAGAGGGT	116704	PASS	AB=0.464212,0.503682;ABP=40.7786,3.41006;AC=136,50;AF=0.731183,0.268817;AN=186;AO=4141,1724;CIGAR=3M1X4M,1X2M1X4M;DP=6091;DPB=6091.25;DPRA=0,1.13784;EPP=8995.08,3746.63;EPPR=16.0391;GTI=0;LEN=1,8;MEANALT=3.17204,3.53704;MQM=59.9957,59.9756;MQMR=60;NS=93;NUMALT=2;ODDS=2.07413;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=144030,56677;QR=194;RO=6;RPL=0,0;RPP=8995.08,3746.63;RPPR=16.0391;RPR=4141,1724;RUN=1,1;SAF=0,0;SAP=8995.08,3746.63;SAR=4141,1724;SRF=0;SRP=16.0391;SRR=6;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,35,1:0:0:35,1:1196,23:-107.685,-10.5361,0,-105.919,-8.77548,-105.618	1/2:36:0,15,18:0:0:15,18:517,565:-87.4618,-45.452,-40.9365,-42.054,0,-36.6354	1/2:135:0,68,63:0:0:68,63:2347,2082:-359.094,-168.412,-147.942,-190.749,0,-171.785	1/2:194:0,98,90:0:0:98,90:3438,2986:-521.376,-241.584,-212.083,-279.832,0,-252.739	1/2:35:0,13,21:0:0:13,21:460,676:-91.9913,-54.511,-50.5976,-37.5089,0,-31.1873	1/2:34:0,13,20:0:0:13,20:464,653:-90.6533,-52.8127,-48.8993,-37.9358,0,-31.9152	1/1:72:0,67,0:0:0:67,0:2307,0:-207.617,-20.169,0,-207.617,-20.169,-207.617	1/2:99:0,50,47:0:0:50,47:1761,1564:-269.987,-126.607,-111.556,-143.433,0,-129.284	1/2:107:0,49,54:0:0:49,54:1692,1794:-282.734,-145.258,-130.508,-137.586,0,-121.33	1/1:56:0,53,0:0:0:53,0:1871,0:-168.363,-15.9546,0,-168.363,-15.9546,-168.363	1/2:32:1,20,9:1:35:20,9:700,287:-76.9748,-20.2935,-17.1244,-54.1685,0,-54.3074	1/1:59:0,57,0:0:0:57,0:1935,0:-174.177,-17.1587,0,-174.177,-17.1587,-174.177	1/2:56:0,22,33:0:0:22,33:780,1048:-147.877,-84.3166,-77.6939,-63.5408,0,-53.6068	1/1:29:0,29,0:0:0:29,0:1001,0:-90.3978,-8.72987,0,-90.3978,-8.72987,-90.3978	1/1:39:0,36,0:0:0:36,0:1261,0:-113.551,-10.8371,0,-113.551,-10.8371,-113.551	1/1:29:0,27,0:0:0:27,0:948,0:-85.3684,-8.12781,0,-85.3684,-8.12781,-85.3684	1/2:21:0,8,10:0:0:8,10:271,321:-47.8978,-25.9137,-23.5055,-22.0249,0,-19.0146	1/2:19:0,11,8:0:0:11,8:392,270:-54.1842,-22.2208,-18.9094,-32.3087,0,-29.9005	1/1:26:1,23,0:1:28:23,0:808,0:-70.2406,-4.70163,0,-70.5416,-6.92369,-72.7578	1/1:157:0,153,0:0:0:153,0:5376,0:-483.689,-46.0576,0,-483.689,-46.0576,-483.689	1/2:157:1,78,73:1:30:78,73:2670,2418:-409.649,-193.22,-172.137,-214.382,0,-194.805	1/1:61:0,60,0:0:0:60,0:2099,0:-188.916,-18.0618,0,-188.916,-18.0618,-188.916	1/2:68:0,27,39:0:0:27,39:927,1297:-180.313,-105.037,-96.9089,-75.3661,0,-63.626	1/2:19:0,15,3:0:0:15,3:504,100:-48.9546,-8.11901,-3.60356,-40.8606,0,-39.9575	1/1:52:0,50,0:0:0:50,0:1764,0:-158.866,-15.0515,0,-158.866,-15.0515,-158.866	1/2:160:0,64,83:0:0:64,83:2226,2728:-401.501,-220.502,-201.236,-181.052,0,-156.067	1/2:93:0,37,54:0:0:37,54:1294,1795:-250.649,-145.367,-134.229,-105.413,0,-89.1577	1/2:20:0,10,10:0:0:10,10:351,341:-56.5798,-28.0093,-24.999,-28.9164,0,-25.9061	1/2:209:0,109,91:0:0:109,91:3792,3009:-551.713,-243.38,-210.568,-308.394,0,-281	1/1:112:1,101,8:1:32:101,8:3484,236:-310.594,-27.8234,0,-292.072,-11.5835,-292.242	1/1:61:0,51,3:0:0:51,3:1743,86:-156.845,-15.3525,0,-150.013,-8.52105,-149.11	1/2:12:0,3,9:0:0:3,9:108,282:-31.7996,-22.9757,-22.0726,-9.17208,0,-6.46281	1/2:14:0,11,3:0:0:11,3:372,108:-39.3094,-9.17208,-5.86075,-30.4925,0,-29.5894	1/1:4:0,4,0:0:0:4,0:140,0:-12.9446,-1.20412,0,-12.9446,-1.20412,-12.9446	.:.:.:.:.:.:.:.	1/1:32:1,30,0:1:35:30,0:1047,0:-91.0687,-6.15321,0,-91.3697,-9.0309,-94.2175	1/1:108:1,103,0:1:34:103,0:3584,0:-319.404,-28.2396,0,-319.705,-31.0061,-322.463	1/1:96:0,91,0:0:0:91,0:3144,0:-282.91,-27.3937,0,-282.91,-27.3937,-282.91	1/2:35:0,15,20:0:0:15,20:528,668:-97.4032,-54.4114,-49.896,-43.3359,0,-37.3153	1/1:8:0,8,0:0:0:8,0:276,0:-25.1752,-2.40824,0,-25.1752,-2.40824,-25.1752	1/2:128:0,58,67:0:0:58,67:2019,2169:-339.205,-175.019,-157.559,-164.264,0,-144.095	1/1:41:0,40,0:0:0:40,0:1399,0:-125.905,-12.0412,0,-125.905,-12.0412,-125.905	1/1:60:0,59,0:0:0:59,0:2051,0:-184.549,-17.7608,0,-184.549,-17.7608,-184.549	1/1:27:0,25,0:0:0:25,0:876,0:-78.8349,-7.52575,0,-78.8349,-7.52575,-78.8349	1/1:27:0,23,0:0:0:23,0:793,0:-71.3956,-6.92369,0,-71.3956,-6.92369,-71.3956	1/1:105:0,100,0:0:0:100,0:3445,0:-309.983,-30.103,0,-309.983,-30.103,-309.983	1/2:101:0,32,65:0:0:32,65:1124,2086:-259.695,-168.2,-158.567,-91.5871,0,-72.0202	1/1:136:0,132,0:0:0:132,0:4555,0:-409.802,-39.736,0,-409.802,-39.736,-409.802	1/2:67:0,27,39:0:0:27,39:955,1256:-179.083,-101.287,-93.1591,-77.8352,0,-66.095	1/2:159:0,78,76:0:0:78,76:2741,2546:-429.351,-206.239,-182.759,-223.178,0,-200.3	1/1:89:0,86,0:0:0:86,0:2991,0:-269.138,-25.8886,0,-269.138,-25.8886,-269.138	1/1:20:0,20,0:0:0:20,0:703,0:-63.5935,-6.0206,0,-63.5935,-6.0206,-63.5935	1/1:63:0,61,0:0:0:61,0:2138,0:-192.425,-18.3628,0,-192.425,-18.3628,-192.425	1/1:52:0,51,0:0:0:51,0:1770,0:-159.278,-15.3525,0,-159.278,-15.3525,-159.278	1/1:17:0,14,0:0:0:14,0:491,0:-44.215,-4.21442,0,-44.215,-4.21442,-44.215	1/1:112:0,106,0:0:0:106,0:3674,0:-330.636,-31.9092,0,-330.636,-31.9092,-330.636	1/1:23:0,22,0:0:0:22,0:775,0:-69.8168,-6.62266,0,-69.8168,-6.62266,-69.8168	1/2:15:0,8,7:0:0:8,7:272,227:-40.7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chr11	31143948	.	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chr11	31192480	.	G	A	92966.3	PASS	AB=0.418611;ABP=202.719;AC=137;AF=0.728723;AN=188;AO=4345;CIGAR=1X;DP=6381;DPB=6381;DPRA=11.4247;EPP=8672.52;EPPR=4095.89;GTI=4;LEN=1;MEANALT=1.02151;MQM=53.6352;MQMR=59.5113;NS=94;NUMALT=1;ODDS=1.06544;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=155754;QR=72493;RO=2034;RPL=90;RPP=8672.52;RPPR=4104.25;RPR=4255;RUN=1;SAF=4345;SAP=9438.06;SAR=0;SRF=2033;SRP=4411.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:1008:-90.8936,-8.42884,0	0/1:45:27,18:27:934:18:648:-45.0224,0,-70.821	0/1:111:80,31:80:2841:31:1112:-66.6838,0,-222.426	0/1:174:98,76:98:3500:76:2713:-191.524,0,-262.805	0/1:45:36,9:36:1268:9:324:-15.9084,0,-100.873	0/1:29:17,11:17:612:11:396:-27.1436,0,-45.9777	1/1:95:0,95:0:0:95:3416:-307.215,-28.5979,0	0/1:107:83,24:83:2972:24:841:-43.6954,0,-235.26	0/1:109:63,46:63:2252:46:1643:-114.931,0,-170.096	1/1:72:0,72:0:0:72:2592:-232.743,-21.6742,0	0/1:78:28,50:28:1004:50:1792:-137.858,0,-67.1955	1/1:80:0,80:0:0:80:2865:-257.389,-24.0824,0	0/1:67:34,33:34:1220:33:1184:-86.0728,0,-89.9189	1/1:55:0,55:0:0:55:1980:-177.982,-16.5567,0	1/1:101:0,101:0:0:101:3624:-325.679,-30.404,0	1/1:64:0,64:0:0:64:2296:-206.301,-19.2659,0	0/1:42:24,18:24:849:18:648:-45.9301,0,-64.08	0/1:35:19,16:19:680:16:553:-39.3439,0,-50.85	1/1:48:0,48:0:0:48:1728:-155.366,-14.4494,0	1/1:73:0,73:0:0:73:2621:-235.176,-21.9752,0	0/1:126:33,93:33:1184:93:3334:-261.405,0,-68.9385	1/1:31:0,31:0:0:31:1116:-100.601,-9.33193,0	0/1:127:62,65:62:2189:65:2332:-171.481,0,-159.037	1/1:48:1,47:1:36:47:1688:-148.247,-10.8512,0	1/1:19:0,19:0:0:19:684:-61.6179,-5.71957,0	0/1:157:104,53:104:3688:53:1904:-123.987,0,-284.852	0/1:193:123,70:123:4356:70:2493:-166.21,0,-333.932	0/1:24:3,21:3:108:21:756:-61.0456,0,-2.85045	0/1:198:106,92:106:3784:92:3300:-236.432,0,-281.128	1/1:59:2,57:2:72:57:2033:-175.993,-10.924,0	1/1:71:0,71:0:0:71:2552:-229.14,-21.3731,0	0/1:4:1,3:1:36:3:108:-8.85308,0,-2.39415	0/1:13:7,6:7:252:6:212:-15.4861,0,-19.1156	1/1:2:0,2:0:0:2:72:-6.82703,-0.60206,0	0/1:3:2,1:2:72:1:36:-2.69008,0,-5.93363	1/1:6:0,6:0:0:6:216:-19.7624,-1.80618,0	1/1:204:0,204:0:0:204:7320:-657.413,-61.4101,0	1/1:35:0,35:0:0:35:1252:-112.829,-10.5361,0	0/1:44:18,26:18:648:26:926:-70.2688,0,-45.4066	1/1:4:0,4:0:0:4:144:-13.2947,-1.20412,0	0/1:101:68,33:68:2421:33:1188:-76.6542,0,-187.731	1/1:38:0,38:0:0:38:1368:-122.387,-11.4391,0	1/1:71:1,70:1:32:70:2507:-221.398,-18.1738,0	1/1:72:0,72:0:0:72:2592:-232.896,-21.6742,0	1/1:70:0,70:0:0:70:2512:-225.989,-21.0721,0	1/1:37:0,37:0:0:37:1328:-119.434,-11.1381,0	0/1:40:32,8:32:1144:8:288:-14.189,0,-91.2107	1/1:90:0,90:0:0:90:3228:-290.281,-27.0927,0	0/1:58:25,33:25:883:33:1173:-88.2728,0,-62.3231	1/1:98:0,98:0:0:98:3508:-315.446,-29.5009,0	1/1:48:2,46:2:72:46:1652:-141.752,-7.61272,0	0/1:10:1,9:1:36:9:324:-26.3039,0,-0.587975	0/1:63:39,24:39:1387:24:864:-58.5824,0,-106.141	1/1:53:0,53:0:0:53:1904:-171.006,-15.9546,0	0/1:2:1,1:1:36:1:36:-2.99111,0,-2.99621	1/1:73:0,73:0:0:73:2620:-235.557,-21.9752,0	1/1:22:0,22:0:0:22:784:-70.6129,-6.62266,0	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:10:0,10:0:0:10:358:-32.4135,-3.0103,0	0/1:95:59,36:59:2097:36:1292:-87.8228,0,-160.396	0/1:71:26,45:26:928:45:1608:-123.272,0,-62.4605	0/1:2:1,1:1:36:1:36:-2.99111,0,-2.99111	1/1:61:2,59:2:72:59:2116:-183.596,-11.5261,0	0/1:91:55,36:55:1953:36:1292:-88.8525,0,-148.595	0/1:45:29,16:29:1040:16:572:-38.1959,0,-80.368	0/1:64:49,15:49:1747:15:532:-28.878,0,-138.234	1/1:115:0,115:0:0:115:4128:-370.867,-34.6185,0	1/1:67:0,67:0:0:67:2388:-214.802,-20.169,0	0/1:45:20,25:20:712:25:900:-67.5061,0,-50.7895	0/1:29:20,9:20:711:9:324:-20.7388,0,-55.5658	0/1:41:19,22:19:680:22:788:-58.7844,0,-49.1869	0/1:24:9,15:9:324:15:525:-40.2669,0,-22.2765	1/1:64:2,62:2:72:62:2213:-191.554,-12.4292,0	0/1:76:44,32:44:1576:32:1148:-80.6033,0,-119.196	0/1:180:131,49:131:4673:49:1733:-101.678,0,-366.507	1/1:125:0,125:0:0:125:4479:-402.537,-37.6288,0	0/1:81:65,16:65:2316:16:576:-27.7176,0,-184.258	1/1:124:0,124:0:0:124:4432:-397.562,-37.3277,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7896	0/1:71:46,25:46:1640:25:900:-59.8326,0,-126.509	0/1:92:60,31:60:2148:31:1108:-71.8567,0,-165.748	1/1:134:0,134:0:0:134:4797:-430.493,-40.338,0	0/1:53:21,32:21:752:32:1144:-87.1776,0,-52.0424	0/1:59:33,26:33:1188:26:932:-66.1585,0,-89.4586	1/1:59:0,59:0:0:59:2109:-189.773,-17.7608,0	1/1:123:1,122:1:36:122:4390:-390.96,-33.4284,0	1/1:25:0,25:0:0:25:900:-81.2057,-7.52575,0	0/1:54:27,27:27:968:27:972:-71.2692,0,-71.1641	0/1:66:32,34:32:1129:34:1220:-89.6842,0,-82.0484	0/1:68:48,20:48:1719:20:720:-44.545,0,-134.421	0/1:100:57,43:57:2044:43:1548:-109.317,0,-154.12	0/1:59:31,28:31:1112:28:1008:-73.1465,0,-82.6195	1/1:93:0,93:0:0:93:3332:-299.697,-27.9958,0	1/1:136:1,135:1:36:135:4860:-432.458,-37.3418,0
chr11	31192525	.	G	A	65334.1	PASS	AB=0.580479;ABP=242.777;AC=59;AF=0.320652;AN=184;AO=4806;CIGAR=1X;DP=9691;DPB=9691;DPRA=1.79021;EPP=10439.1;EPPR=10161.4;GTI=14;LEN=1;MEANALT=1.03636;MQM=30.0023;MQMR=39.5123;NS=92;NUMALT=1;ODDS=1.01232;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172003;QR=173587;RO=4880;RPL=4806;RPP=10439.1;RPPR=10161.4;RPR=0;RUN=1;SAF=0;SAP=10439.1;SAR=4806;SRF=0;SRP=10599.8;SRR=4880;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:23:23,0:23:812:0:0:0,-6.92369,-68.1953	0/1:67:39,28:39:1392:28:999:-48.5518,0,-96.1289	0/1:131:57,74:57:2019:74:2639:-140.686,0,-128.938	0/1:229:107,122:107:3824:122:4379:-264.232,0,-260.448	0/1:42:10,32:10:360:32:1152:-70.5327,0,-17.5	0/1:21:7,14:7:248:14:504:-28.0228,0,-14.2934	0/0:49:49,0:49:1735:0:0:0,-14.7505,-147.742	0/1:139:53,86:53:1896:86:3079:-168.092,0,-114.647	0/1:90:33,57:33:1176:57:2052:-112.523,0,-71.9039	0/0:41:41,0:41:1460:0:0:0,-12.3422,-124.874	0/1:156:29,127:29:1031:127:4543:-300.625,0,-41.789	0/0:93:93,0:93:3268:0:0:0,-27.9958,-274.01	0/1:67:46,21:46:1631:21:756:-31.4146,0,-114.82	0/0:92:92,0:92:3281:0:0:0,-27.6948,-279.059	0/0:68:68,0:68:2422:0:0:0,-20.47,-208.45	0/0:73:73,0:73:2607:0:0:0,-21.9752,-220.329	0/1:30:15,15:15:540:15:540:-28.1814,0,-36.333	0/1:44:25,19:25:877:19:680:-33.4998,0,-59.1841	0/0:36:36,0:36:1284:0:0:0,-10.8371,-105.575	0/0:157:157,0:157:5616:0:0:0,-47.2617,-482.772	0/1:199:96,103:96:3424:103:3692:-208.559,0,-231.953	0/0:25:24,0:24:852:0:0:0,-7.22472,-74.1164	0/1:85:45,40:45:1595:40:1432:-83.5585,0,-112.486	0/1:28:23,5:23:798:5:180:-4.92388,0,-59.3615	0/0:44:44,0:44:1572:0:0:0,-13.2453,-129.561	0/1:158:71,87:71:2523:87:3124:-199.782,0,-172.839	0/1:178:103,75:103:3680:75:2683:-141.082,0,-256.21	0/1:23:14,9:14:500:9:324:-16.4819,0,-36.2816	0/1:263:153,110:153:5435:110:3929:-233.564,0,-397.254	0/0:58:57,1:57:2032:1:36:0,-14.557,-168.71	0/0:81:81,0:81:2879:0:0:0,-24.3834,-248.077	1/1:336:2,334:2:68:334:11982:-860.349,-94.8744,0	1/1:265:6,259:6:216:259:9263:-650.991,-61.0141,0	.:.:.:.:.:.:.:.	1/1:424:2,422:2:72:422:15087:-1022.69,-121.279,0	0/0:9:9,0:9:311:0:0:0,-2.70927,-26.6077	0/0:190:189,0:189:6759:0:0:0,-56.8947,-590.61	0/0:31:31,0:31:1104:0:0:0,-9.33193,-93.3731	0/1:135:23,112:23:820:112:4000:-234.864,0,-27.7464	.:.:.:.:.:.:.:.	0/1:81:39,42:39:1388:42:1512:-85.3307,0,-93.036	0/0:35:35,0:35:1235:0:0:0,-10.536,-104.379	0/0:47:47,0:47:1658:0:0:0,-14.1484,-141.322	0/0:71:71,0:71:2531:0:0:0,-21.3731,-218.401	0/0:62:62,0:62:2212:0:0:0,-18.6639,-190.628	0/0:17:17,0:17:612:0:0:0,-5.11751,-52.0944	0/1:79:32,46:32:1139:46:1656:-88.9447,0,-72.4439	0/0:130:129,1:129:4575:1:36:0,-36.0794,-387.861	0/1:53:28,25:28:1008:25:896:-53.2468,0,-70.1435	0/0:114:114,0:114:4063:0:0:0,-34.3174,-349.029	0/0:62:62,0:62:2181:0:0:0,-18.6639,-189.847	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.0722	0/1:72:27,45:27:972:45:1599:-88.48,0,-59.7707	0/0:37:37,0:37:1324:0:0:0,-11.1381,-116.854	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.3923	0/0:123:123,0:123:4344:0:0:0,-37.0267,-372.472	0/0:29:29,0:29:1032:0:0:0,-8.72987,-87.3078	1/1:334:8,326:8:288:326:11611:-884.982,-75.677,0	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.1901	0/1:44:26,18:26:924:18:644:-33.42,0,-65.1674	0/1:70:41,29:41:1468:29:1040:-58.2679,0,-106.168	1/1:219:5,214:5:176:214:7653:-565.655,-51.2052,0	0/1:139:100,39:100:3551:39:1395:-65.5724,0,-269.872	0/1:130:55,75:55:1952:75:2683:-165.962,0,-129.358	0/1:42:19,21:19:672:21:756:-41.8064,0,-45.6095	0/1:87:28,59:28:1000:59:2124:-135.718,0,-61.2717	0/0:96:95,1:95:3375:1:36:0,-25.8443,-287.028	0/0:111:111,0:111:3942:0:0:0,-33.4143,-340.411	1/1:173:14,159:14:496:159:5677:-372.295,-12.7476,0	0/1:56:29,27:29:1036:27:959:-49.7046,0,-69.6375	0/1:38:24,14:24:864:14:504:-28.0118,0,-65.0082	1/1:209:9,200:9:316:200:7171:-519.317,-35.5524,0	0/0:51:51,0:51:1807:0:0:0,-15.3525,-151.612	0/1:79:38,41:38:1360:41:1476:-76.5593,0,-88.5856	0/1:118:44,74:44:1563:74:2652:-156.819,0,-96.5813	0/0:235:235,0:235:8370:0:0:0,-70.742,-723.005	0/1:52:9,43:9:316:43:1544:-90.1945,0,-11.0123	0/0:136:136,0:136:4830:0:0:0,-40.9401,-401.612	1/1:424:10,414:10:360:414:14810:-981.18,-97.3893,0	0/1:111:54,57:54:1919:57:2048:-114.783,0,-128.385	0/1:101:33,68:33:1176:68:2432:-136.505,0,-64.0914	0/0:174:174,0:174:6166:0:0:0,-52.3792,-533.139	0/1:49:27,22:27:964:22:792:-46.0348,0,-68.949	0/1:50:34,16:34:1216:16:576:-28.6623,0,-90.0821	0/0:46:46,0:46:1635:0:0:0,-13.8474,-140.845	0/0:114:113,1:113:4020:1:36:0,-31.2629,-344.094	0/0:21:21,0:21:733:0:0:0,-6.32163,-61.6199	0/1:54:27,27:27:968:27:959:-50.2713,0,-64.7437	0/1:61:35,26:35:1237:26:917:-44.9749,0,-85.8318	0/1:208:21,187:21:748:187:6699:-423.533,0,-0.944223	0/1:335:39,296:39:1383:296:10583:-667.488,0,-13.4482	0/1:68:27,41:27:949:41:1472:-91.1597,0,-62.5554	0/0:134:134,0:134:4780:0:0:0,-40.338,-412.501	0/0:103:103,0:103:3670:0:0:0,-31.0061,-318.006
chr11	31259083	.	CTACG	CTACA,TTACA	20382.7	PASS	AB=0.208727,0.251208;ABP=2266.07,1561.08;AC=37,28;AF=0.196809,0.148936;AN=188;AO=787,790;CIGAR=4M1X,1X3M1X;DP=6848;DPB=6848;DPRA=0.942234,1.05902;EPP=24.8657,1718.47;EPPR=11092.7;GTI=22;LEN=1,5;MEANALT=2.52326,2.77941;MQM=56.8767,56.1089;MQMR=59.9947;NS=94;NUMALT=2;ODDS=0.130723;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=28137,28114;QR=179429;RO=5111;RPL=438,0;RPP=24.8657,1718.47;RPPR=11092.7;RPR=349,790;RUN=1,1;SAF=787,790;SAP=1711.96,1718.47;SAR=0,0;SRF=5111;SRP=11101.4;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:35,10,0:35:1216:10,0:360,0:-18.9032,0,-95.9172,-29.4393,-98.9275,-128.299	0/0:66:64,1,0:64:2259:1,0:36,0:0,-16.3285,-199.976,-19.2659,-200.277,-203.214	0/0:136:125,8,2:125:4393:8,2:279,66:0,-14.9107,-370.111,-32.2989,-367.188,-389.276	0/2:156:125,5,22:125:4346:5,22:180,779:-25.8252,-48.7723,-400.611,0,-338.667,-346.725	0/1:56:43,7,6:43:1517:7,6:252,216:-7.60383,0,-121.412,-2.93283,-105.903,-124.646	0/0:29:27,1,1:27:939:1,1:36,36:0,-5.19021,-81.2236,-5.19391,-78.5901,-81.2269	0/0:75:73,2,0:73:2573:2,0:72,0:0,-15.7405,-224.984,-21.9752,-225.586,-231.461	0/1:80:71,8,1:71:2523:8,1:288,30:-2.13357,0,-203.241,-21.1147,-203.251,-226.405	0/0:58:53,5,0:53:1816:5,0:176,0:0,-1.28397,-147.541,-15.9546,-149.047,-163.366	0/2:77:65,4,7:65:2289:4,7:144,244:-0.15306,-7.9601,-193.127,0,-174.621,-184.264	0/2:29:11,6,10:11:392:6,10:212,360:-26.0723,-12.1247,-42.2756,0,-14.7052,-28.9544	0/2:39:32,1,6:32:1144:1,6:36,216:-7.95676,-14.6522,-107.629,0,-90.3399,-91.4712	0/1:31:26,5,0:26:914:5,0:171,0:-6.3852,0,-73.244,-14.212,-74.7491,-88.6179	0/1:24:15,5,4:15:527:5,4:180,141:-10.162,0,-41.3881,-3.21127,-31.4235,-44.8948	0/2:37:27,5,5:27:943:5,5:171,178:-6.3851,-0.646158,-75.8417,0,-62.8399,-75.2074	0/2:24:19,2,3:19:674:2,3:72,108:-3.08613,-2.93077,-57.237,0,-49.0325,-54.0048	0/1:10:8,1,1:8:276:1,1:36,36:-0.529363,0,-22.1079,-0.00370687,-19.4732,-22.1113	0/0:16:15,1,0:15:524:1,0:36,0:0,-1.22191,-43.8941,-4.51545,-44.1951,-47.1299	0/1:14:8,5,1:8:275:5,1:180,36:-12.1714,0,-20.8121,-11.6452,-19.3814,-33.667	0/1:124:109,12,3:109:3837:12,3:432,108:-2.36604,0,-308.747,-26.3671,-303.548,-337.825	0/0:68:60,6,1:60:2099:6,1:216,35:0,-0.432771,-169.395,-15.2163,-168.354,-185.674	0/0:114:103,10,0:103:3630:10,0:360,0:0,-1.70795,-294.259,-31.0061,-297.269,-326.553	0/0:110:101,1,5:101:3517:1,5:36,180:0,-27.5106,-313.205,-15.7044,-298.82,-300.207	0/0:81:70,3,0:70:2430:3,0:108,0:0,-12.2544,-208.896,-21.0721,-209.799,-218.612	0/0:86:78,4,2:78:2776:4,2:144,67:0,-11.7197,-236.787,-18.0596,-232.567,-243.711	0/0:298:283,9,5:283:9824:9,5:324,180:0,-58.8652,-854.751,-70.5022,-842.773,-867.59	0/0:193:172,7,11:172:6023:7,11:252,395:0,-31.3555,-519.306,-19.57,-489.211,-506.32	0/1:19:14,4,0:14:487:4,0:144,0:-7.5862,0,-38.4466,-11.8006,-39.6508,-51.3992	0/0:194:187,5,1:187:6568:5,1:180,36:0,-41.6002,-574.664,-53.3548,-573.231,-587.617	0/0:91:83,8,0:83:2947:8,0:288,0:0,-1.12632,-239.198,-24.9855,-241.606,-265.106	0/2:142:72,6,63:72:2504:6,63:216,2235:-160.229,-164.283,-366.064,0,-185.959,-184.615	1/2:48:3,25,18:3:108:25,18:900,647:-116.339,-43.958,-45.2453,-64.4851,0,-67.8793	1/2:91:10,27,37:10:352:27,37:972,1322:-154.413,-79.0181,-99.5474,-49.7553,0,-67.275	1/2:228:1,79,144:1:34:79,144:2809,5142:-643.572,-415.265,-394.241,-225.923,0,-185.332	1/2:78:4,20,49:4:138:20,49:711,1734:-186.553,-129.818,-135.008,-46.7599,0,-43.2214	1/2:125:8,63,54:8:276:63,54:2268,1909:-314.418,-132.436,-135.892,-161.979,0,-168.144	0/2:71:55,3,13:55:1940:3,13:99,467:-21.5634,-30.1229,-187.18,0,-149.986,-154.074	0/0:145:141,3,0:141:4924:3,0:104,0:0,-34.002,-433.609,-42.4452,-434.512,-442.965	0/2:22:11,5,6:11:396:5,6:180,214:-14.1158,-2.96133,-33.7701,0,-17.8501,-30.5088	1/1:15:0,9,1:0:0:9,1:324,30:-29.1056,-2.70927,0,-26.7098,-0.310092,-26.4088	0/0:74:70,2,1:70:2458:2,1:72,36:0,-15.1972,-214.637,-18.1363,-212.303,-217.877	0/1:23:14,7,1:14:500:7,1:252,36:-16.3631,0,-38.6726,-17.6411,-37.8436,-58.1062	0/1:76:65,8,2:65:2280:8,2:284,72:-3.55798,0,-183.134,-17.2704,-179.688,-202.211	0/2:25:20,0,4:20:708:0,4:0,139:-5.38986,-11.4105,-69.1085,0,-57.8089,-56.6048	0/2:28:22,2,3:22:766:2,3:72,107:-2.10126,-2.85097,-64.5351,0,-56.4146,-61.3827	0/0:80:80,0,0:80:2829:0,0:0,0:0,-24.0824,-254.85,-24.0824,-254.85,-254.85	0/1:78:62,10,5:62:2177:10,5:360,180:-10.3093,0,-174.165,-14.3016,-162.504,-189.975	0/0:118:102,9,1:102:3580:9,1:315,36:0,-5.13026,-293.785,-27.7669,-293.557,-318.823	0/0:62:62,0,0:62:2173:0,0:0,0:0,-18.6639,-195.837,-18.6639,-195.837,-195.837	0/1:69:60,9,0:60:2083:9,0:320,0:-8.36504,0,-166.968,-26.4268,-169.677,-195.75	0/0:140:136,0,4:136:4814:0,4:0,143:0,-40.9401,-433.066,-29.0561,-421.535,-420.331	1/2:73:11,33,22:11:395:33,22:1173,783:-123.574,-31.5813,-53.8719,-63.0815,0,-88.6827	0/0:97:92,5,0:92:3242:5,0:180,0:0,-12.9498,-275.753,-27.6948,-277.259,-291.65	0/1:48:33,8,7:33:1149:8,7:284,242:-13.209,0,-91.0257,-3.48341,-73.7705,-94.8026	1/2:94:7,31,54:7:251:31,54:1111,1917:-223.297,-135.127,-146.268,-69.8169,0,-74.0348	0/1:86:67,12,6:67:2339:12,6:432,216:-14.8689,0,-186.633,-17.4216,-172.629,-205.861	0/0:33:33,0,0:33:1152:0,0:0,0:0,-9.93399,-103.984,-9.93399,-103.984,-103.984	0/1:30:4,21,1:4:143:21,1:737,36:-58.7909,0,-5.35464,-57.057,-8.736,-68.4177	1/2:39:5,26,5:5:174:26,5:936,178:-74.9399,-0.364181,-6.68724,-61.9373,0,-74.5795	0/0:41:37,2,0:37:1307:2,0:68,0:0,-5.6044,-111.489,-11.1381,-112.091,-117.607	0/2:44:35,3,6:35:1233:3,6:108,216:-7.08602,-8.8098,-108.286,0,-91.566,-98.5727	1/2:52:4,7,36:4:144:7,36:252,1284:-112.143,-92.8728,-102.516,-8.73141,0,-9.65137	0/0:141:135,6,0:135:4713:6,0:211,0:0,-23.1417,-405.035,-40.639,-406.841,-423.987	0/0:121:108,5,2:108:3783:5,2:180,72:0,-17.8638,-324.182,-26.636,-319.814,-333.852	0/1:31:21,5,4:21:738:5,4:180,133:-8.26693,0,-58.5865,-3.83674,-49.3368,-62.7061	0/1:67:49,10,1:49:1729:10,1:356,36:-14.2785,0,-137.815,-26.0906,-137.888,-166.594	0/0:101:92,3,4:92:3215:3,4:108,138:0,-18.8775,-279.523,-16.4928,-269.228,-276.832	0/0:123:111,10,2:111:3898:10,2:360,72:0,-4.13248,-318.367,-27.5574,-315.52,-344.2	0/2:16:4,3,9:4:138:3,9:104,323:-25.1387,-17.9019,-28.2056,0,-2.76573,-8.50102	0/0:51:49,0,0:49:1725:0,0:0,0:0,-14.7505,-155.258,-14.7505,-155.258,-155.258	0/1:52:36,14,1:36:1268:14,1:504,36:-30.2935,0,-99.0191,-38.1931,-100.296,-141.12	0/2:63:20,19,20:20:692:19,20:684,710:-51.8105,-2.06099,-52.5725,0,-0.455888,-50.2087	0/0:111:102,1,1:102:3590:1,1:36,36:0,-27.7605,-319.766,-27.7638,-317.133,-319.769	0/0:66:58,3,5:58:2038:3,5:104,180:0,-9.0186,-173.988,-2.78109,-160.22,-167.161	0/2:88:61,7,19:61:2142:7,19:248,680:-36.9932,-35.1538,-207.377,0,-154.13,-168.614	0/0:80:69,4,4:69:2448:4,4:144,144:0,-9.00804,-207.288,-9.0073,-196.744,-207.288	0/0:92:83,6,2:83:2886:6,2:216,72:0,-7.34596,-240.201,-19.1147,-236.139,-253.158	0/2:59:50,1,8:50:1763:1,8:36,282:-7.7741,-19.8872,-163.136,0,-140.604,-141.133	0/1:66:10,47,6:10:358:47,6:1688,216:-132.093,0,-15.0605,-117.498,-11.5978,-144.888	0/1:88:63,15,6:63:2219:15,6:536,215:-24.7165,0,-176.144,-26.1543,-163.133,-205.005	0/2:88:71,8,9:71:2492:8,9:288,323:-4.9446,-2.92421,-203.32,0,-179.409,-200.094	0/0:182:171,1,5:171:6040:1,5:36,174:0,-48.5384,-540.14,-37.5106,-526.485,-527.915	0/0:33:29,2,0:29:1017:2,0:66,0:0,-3.36078,-85.5997,-8.72987,-86.2017,-91.5368	0/1:9:6,2,0:6:212:2,0:68,0:-3.70551,0,-16.6729,-5.51169,-17.275,-22.7858	0/1:14:9,2,1:9:319:2,1:72,36:-3.0902,0,-25.4124,-2.8559,-23.0761,-28.562	0/2:49:43,0,6:43:1533:0,6:0,216:-5.02404,-17.9683,-142.929,0,-125.32,-123.514	0/1:16:14,2,0:14:503:2,0:72,0:-2.02024,0,-40.7912,-6.23466,-41.3933,-47.2682	0/0:19:16,1,1:16:572:1,1:36,36:0,-1.86273,-48.2429,-1.97444,-45.7126,-48.3494	0/0:27:24,1,1:24:840:1,1:36,36:0,-4.27287,-72.3463,-4.27639,-69.7128,-72.3497	0/2:46:8,4,33:8:279:4,33:144,1180:-93.7712,-84.5637,-106.05,0,-11.0742,-12.76	0/1:31:19,12,0:19:663:12,0:432,0:-29.0642,0,-50.6619,-34.7838,-54.2743,-88.7071	0/1:25:20,5,0:20:698:5,0:180,0:-9.02154,0,-55.6167,-15.0421,-57.1219,-71.8065	0/0:101:99,0,0:99:3499:0,0:0,0:0,-29.802,-314.827,-29.802,-314.827,-314.827	0/0:35:33,2,0:33:1172:2,0:72,0:0,-3.69933,-98.9509,-9.93399,-99.5529,-105.428
chr11	31261595	.	ATC	GTT,ATT	134563	PASS	AB=0.479471,0.517154;ABP=16.0269,12.0992;AC=133,51;AF=0.722826,0.277174;AN=184;AO=4599,1858;CIGAR=1X1M1X,2M1X;DP=6480;DPB=6482;DPRA=11.8571,1.09294;EPP=9543.05,3533.28;EPPR=7.35324;GTI=1;LEN=3,1;MEANALT=1.84615,2.21053;MQM=50.7073,59.4569;MQMR=60;NS=92;NUMALT=2;ODDS=1.21242;PAIRED=0,0;PAIREDR=0;PAO=3,3;PQA=88,88;PQR=0;PRO=0;QA=156533,66259;QR=64;RO=2;RPL=52,60;RPP=9543.05,3533.28;RPPR=7.35324;RPR=4547,1798;RUN=1,1;SAF=0,0;SAP=9989.61,4037.61;SAR=4599,1858;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9,0:0:0:9,0:319,0:-28.796,-2.70927,0,-28.796,-2.70927,-28.796	1/2:100:0,56,44:0:0:56,44:1914,1571:-281.989,-128.427,-111.57,-153.911,0,-140.665	1/2:65:0,31,34:0:0:31,34:1070,1220:-186.116,-99.8521,-90.5202,-86.614,0,-76.379	1/2:155:0,85,70:0:0:85,70:2900,2497:-437.948,-203.897,-178.31,-234.4,0,-213.328	1/2:49:0,27,22:0:0:27,22:924,780:-136.05,-63.8645,-55.7367,-72.5294,0,-65.9068	1/2:31:0,9,22:0:0:9,22:316,792:-89.6071,-64.9585,-62.2492,-24.9928,0,-18.3701	1/1:144:0,144,0:0:0:144,0:4909,0:-440.17,-43.3483,0,-440.17,-43.3483,-440.17	1/2:121:0,50,71:0:0:50,71:1681,2548:-343.255,-207.967,-192.915,-135.633,0,-114.259	1/2:37:0,20,17:0:0:20,17:705,612:-107.205,-50.2844,-44.2638,-57.2758,0,-52.1583	1/1:60:0,59,0:0:0:59,0:1990,0:-178.026,-17.7608,0,-178.026,-17.7608,-178.026	1/2:52:0,18,34:0:0:18,34:593,1201:-145.93,-98.1116,-92.6931,-48.1555,0,-37.9205	1/1:54:0,54,0:0:0:54,0:1859,0:-166.347,-16.2556,0,-166.347,-16.2556,-166.347	1/2:57:0,24,33:0:0:24,33:821,1167:-161.776,-95.4011,-88.1764,-66.7214,0,-56.7875	1/1:64:0,64,0:0:0:64,0:2163,0:-194.26,-19.2659,0,-194.26,-19.2659,-194.26	1/1:42:0,42,0:0:0:42,0:1422,0:-127.688,-12.6433,0,-127.688,-12.6433,-127.688	1/1:33:0,33,0:0:0:33,0:1107,0:-98.9107,-9.93399,0,-98.9107,-9.93399,-98.9107	1/2:48:0,23,25:0:0:23,25:758,887:-133.374,-72.6142,-65.6905,-61.0998,0,-53.574	1/2:56:1,24,29:1:36:24,29:809,1031:-146.015,-81.0923,-76.8053,-62.3136,0,-56.5222	1/1:28:0,28,0:0:0:28,0:964,0:-86.7871,-8.42884,0,-86.7871,-8.42884,-86.7871	1/1:141:0,141,0:0:0:141,0:4812,0:-431.661,-42.4452,0,-431.661,-42.4452,-431.661	1/2:99:0,71,28:0:0:71,28:2415,996:-276.528,-81.526,-60.1529,-195.352,0,-186.923	1/1:67:0,67,0:0:0:67,0:2313,0:-207.658,-20.169,0,-207.658,-20.169,-207.658	1/2:27:0,6,21:0:0:6,21:202,744:-77.1307,-60.9599,-59.1538,-16.5084,0,-10.1868	1/1:45:0,44,1:0:0:44,1:1518,36:-135.232,-13.2453,0,-132.294,-9.94808,-131.993	1/1:64:0,64,0:0:0:64,0:2136,0:-190.717,-19.2659,0,-190.717,-19.2659,-190.717	1/2:198:0,98,100:0:0:98,100:3325,3565:-560.096,-290.921,-261.42,-269.522,0,-239.419	1/2:163:0,87,76:0:0:87,76:2908,2696:-454.185,-219.986,-193.797,-234.543,0,-211.665	1/2:37:0,15,22:0:0:15,22:521,776:-105.632,-63.5395,-59.024,-42.4411,0,-35.8185	1/2:187:1,78,107:1:28:78,107:2663,3817:-523.836,-308.956,-287.694,-213.028,0,-183.036	1/1:146:0,140,6:0:0:140,6:4741,216:-423.359,-42.1442,0,-405.743,-24.1692,-403.937	1/1:89:0,89,0:0:0:89,0:3038,0:-272.368,-26.7917,0,-272.368,-26.7917,-272.368	1/2:10:0,7,3:0:0:7,3:218,108:-26.5395,-9.17208,-7.06487,-17.7122,0,-16.8091	1/2:4:0,2,2:0:0:2,2:72,72:-11.7791,-6.23466,-5.6326,-5.8953,0,-5.29324	1/1:1:0,1,0:0:0:1,0:33,0:-3.29457,-0.30103,0,-3.29457,-0.30103,-3.29457	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:173:0,172,0:0:0:172,0:5818,0:-522.322,-51.7772,0,-522.322,-51.7772,-522.322	1/1:241:0,239,0:0:0:239,0:8085,0:-723.286,-71.9462,0,-723.286,-71.9462,-723.286	1/2:58:0,27,31:0:0:27,31:920,1116:-165.379,-91.4189,-83.291,-74.3078,0,-64.9758	1/1:3:0,3,0:0:0:3,0:106,0:-8.99593,-0.90309,0,-8.99593,-0.90309,-8.99593	1/2:96:0,43,52:0:0:43,52:1446,1864:-268.792,-152.107,-139.163,-116.777,0,-101.123	1/1:33:0,33,0:0:0:33,0:1117,0:-100.104,-9.93399,0,-100.104,-9.93399,-100.104	1/1:79:0,78,0:0:0:78,0:2654,0:-237.352,-23.4803,0,-237.352,-23.4803,-237.352	1/1:45:0,44,0:0:0:44,0:1473,0:-131.882,-13.2453,0,-131.882,-13.2453,-131.882	1/1:75:0,75,0:0:0:75,0:2546,0:-228.55,-22.5773,0,-228.55,-22.5773,-228.55	1/1:44:0,44,0:0:0:44,0:1512,0:-135.907,-13.2453,0,-135.907,-13.2453,-135.907	1/2:181:0,66,114:0:0:66,114:2287,4052:-514.359,-330.094,-310.226,-184.195,0,-149.878	1/1:144:0,143,0:0:0:143,0:4856,0:-434.799,-43.0473,0,-434.799,-43.0473,-434.799	1/2:66:0,29,37:0:0:29,37:999,1323:-189.128,-108.229,-99.4986,-81.2493,0,-70.1112	1/1:74:0,74,0:0:0:74,0:2511,0:-225.594,-22.2762,0,-225.594,-22.2762,-225.594	1/1:83:0,83,0:0:0:83,0:2889,0:-259.547,-24.9855,0,-259.547,-24.9855,-259.547	1/1:4:0,4,0:0:0:4,0:144,0:-13.2923,-1.20412,0,-13.2923,-1.20412,-13.2923	1/2:81:0,38,43:0:0:38,43:1309,1536:-230.963,-125.547,-114.108,-105.765,0,-92.8207	1/1:22:0,22,0:0:0:22,0:733,0:-66.0081,-6.62266,0,-66.0081,-6.62266,-66.0081	1/1:21:0,21,0:0:0:21,0:720,0:-64.8759,-6.32163,0,-64.8759,-6.32163,-64.8759	1/1:78:0,78,0:0:0:78,0:2649,0:-237.137,-23.4803,0,-237.137,-23.4803,-237.137	1/1:21:0,21,0:0:0:21,0:719,0:-64.7694,-6.32163,0,-64.7694,-6.32163,-64.7694	1/2:6:0,2,4:0:0:2,4:64,144:-17.2439,-12.1095,-11.5074,-5.4673,0,-4.26318	1/1:21:0,21,0:0:0:21,0:730,0:-65.8957,-6.32163,0,-65.8957,-6.32163,-65.8957	1/2:42:0,26,16:0:0:26,16:900,568:-119.087,-46.6162,-38.7894,-72.8211,0,-68.0046	1/2:119:0,59,59:0:0:59,59:2001,2073:-329.95,-168.755,-150.994,-161.219,0,-143.458	1/2:4:0,2,2:0:0:2,2:64,72:-11.3545,-6.23466,-5.6326,-5.45925,0,-4.85719	1/2:137:0,72,65:0:0:72,65:2450,2336:-389.173,-190.902,-169.228,-198.621,0,-179.054	1/2:118:0,48,70:0:0:48,70:1635,2507:-336.434,-204.805,-190.355,-131.975,0,-110.903	1/2:26:0,14,12:0:0:14,12:493,432:-75.5891,-35.6088,-31.3944,-40.336,0,-36.7236	1/2:62:0,33,28:0:0:33,28:1129,1008:-173.322,-82.262,-72.328,-91.0702,0,-82.6413	1/1:70:0,69,1:0:0:69,1:2372,32:-212.494,-20.7711,0,-209.916,-17.8728,-209.615	1/1:63:0,63,0:0:0:63,0:2118,0:-190.124,-18.9649,0,-190.124,-18.9649,-190.124	1/2:16:0,7,9:0:0:7,9:250,316:-46.3704,-26.0696,-23.9624,-20.6544,0,-17.9451	1/2:47:0,28,18:0:0:28,18:960,644:-129.736,-52.6068,-44.1779,-77.2133,0,-71.7948	1/2:82:0,38,44:0:0:38,44:1289,1576:-233.103,-128.827,-117.387,-104.566,0,-91.3202	1/2:15:0,7,8:0:0:7,8:218,288:-41.3184,-23.8592,-21.752,-17.793,0,-15.3848	1/1:82:0,81,1:0:0:81,1:2823,36:-252.657,-24.3834,0,-249.719,-21.0862,-249.418	1/2:77:0,50,27:0:0:50,27:1729,972:-219.523,-79.6619,-64.6104,-140.215,0,-132.088	1/2:83:0,27,56:0:0:27,56:924,2004:-238.382,-163.695,-155.567,-75.0331,0,-58.1755	1/1:113:0,113,0:0:0:113,0:3865,0:-346.801,-34.0164,0,-346.801,-34.0164,-346.801	1/2:88:0,46,42:0:0:46,42:1554,1492:-245.139,-120.733,-106.886,-124.75,0,-112.106	1/1:55:0,54,1:0:0:54,1:1818,36:-162.879,-16.2556,0,-159.941,-12.9584,-159.64	2/2:6:0,0,6:0:0:0,6:0,216:-19.7905,-19.7905,-19.7905,-1.80618,-1.80618,0	1/2:106:0,45,60:0:0:45,60:1572,2148:-302.59,-175.231,-161.684,-127.429,0,-109.368	1/2:60:0,21,39:0:0:21,39:699,1388:-169.734,-113.431,-107.109,-56.6435,0,-44.9034	1/1:79:0,79,0:0:0:79,0:2670,0:-239.746,-23.7814,0,-239.746,-23.7814,-239.746	1/2:95:0,52,43:0:0:52,43:1772,1528:-267.584,-124.862,-109.209,-143.07,0,-130.125	1/2:43:0,22,21:0:0:22,21:757,735:-121.322,-60.1424,-53.5198,-61.5255,0,-55.2038	1/1:45:0,45,0:0:0:45,0:1514,0:-136.231,-13.5464,0,-136.231,-13.5464,-136.231	1/1:114:0,112,2:0:0:112,2:3838,72:-344.064,-33.7154,0,-338.188,-27.4807,-337.586	1/2:33:0,18,15:0:0:18,15:627,532:-94.423,-43.686,-38.2675,-51.0879,0,-46.5724	1/2:70:0,28,41:0:0:28,41:949,1455:-195.06,-118.605,-110.176,-76.5175,0,-64.1752	1/2:68:0,33,35:0:0:33,35:1131,1238:-192.073,-101.17,-91.2358,-91.2497,0,-80.7137	1/2:29:0,16,13:0:0:16,13:556,460:-82.8072,-37.8164,-33,-45.341,0,-41.4276	1/2:91:0,50,41:0:0:50,41:1707,1476:-258.813,-120.785,-105.733,-138.379,0,-126.037	1/2:61:0,27,34:0:0:27,34:823,1216:-165.133,-99.4206,-91.2927,-66.04,0,-55.805	1/1:74:0,73,0:0:0:73,0:2503,0:-224.074,-21.9752,0,-224.074,-21.9752,-224.074	1/1:75:0,71,1:0:0:71,1:2397,36:-214.996,-21.3731,0,-212.058,-18.428,-211.757
chr11	31314627	.	ATCT	ATCA,GTCA	94456.9	PASS	AB=0.503212,0.491634;ABP=3.21954,4.42721;AC=134,51;AF=0.72043,0.274194;AN=186;AO=3283,1153;CIGAR=3M1X,1X2M1X;DP=4455;DPB=4455;DPRA=12.0951,0.895254;EPP=6993.66,2463.48;EPPR=13.8677;GTI=2;LEN=1,4;MEANALT=1.69565,2.15385;MQM=59.9619,59.8708;MQMR=60;NS=93;NUMALT=2;ODDS=3.91436;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=117365,39364;QR=132;RO=5;RPL=3267,1148;RPP=6993.66,2463.48;RPPR=13.8677;RPR=16,5;RUN=1,1;SAF=0,0;SAP=7131.95,2506.72;SAR=3283,1153;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31,0:0:0:31,0:1103,0:-99.5798,-9.33193,0,-99.5798,-9.33193,-99.5798	1/2:44:0,21,23:0:0:21,23:737,778:-123.393,-63.4087,-57.0871,-60.329,0,-53.4053	1/2:73:0,25,48:0:0:25,48:885,1653:-206.665,-134.588,-127.063,-72.427,0,-57.9776	1/2:124:0,60,63:0:0:60,63:2135,2147:-348.238,-174.231,-156.169,-174.055,0,-155.09	1/2:14:0,7,7:0:0:7,7:252,240:-40.3978,-19.8273,-17.7201,-20.9217,0,-18.8145	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:13:0,13,0:0:0:13,0:464,0:-42.0975,-3.91339,0,-42.0975,-3.91339,-42.0975	1/2:36:1,17,17:1:25:17,17:585,573:-91.6895,-44.5623,-41.3893,-45.558,0,-42.3846	1/2:35:0,20,15:0:0:20,15:720,510:-100.467,-41.7071,-35.6865,-59.1082,0,-54.5927	1/1:103:0,103,0:0:0:103,0:3660,0:-329.567,-31.0061,0,-329.567,-31.0061,-329.567	1/2:37:1,13,23:1:24:13,23:468,798:-101.005,-63.1149,-61.056,-36.4474,0,-31.374	1/1:49:0,49,0:0:0:49,0:1756,0:-158.324,-14.7505,0,-158.324,-14.7505,-158.324	1/2:54:0,24,30:0:0:24,30:860,1023:-153.492,-83.3453,-76.1205,-70.4971,0,-61.4662	1/1:31:0,31,0:0:0:31,0:1104,0:-99.6706,-9.33193,0,-99.6706,-9.33193,-99.6706	1/1:69:0,68,0:0:0:68,0:2448,0:-220.342,-20.47,0,-220.342,-20.47,-220.342	1/1:55:0,55,0:0:0:55,0:1959,0:-176.585,-16.5567,0,-176.585,-16.5567,-176.585	1/2:31:0,13,18:0:0:13,18:468,609:-87.9032,-49.7077,-45.7943,-38.5463,0,-33.1277	1/2:25:0,10,15:0:0:10,15:360,524:-72.3519,-42.9735,-39.9632,-29.734,0,-25.2186	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/1:75:0,75,0:0:0:75,0:2688,0:-242.165,-22.5773,0,-242.165,-22.5773,-242.165	1/2:64:0,42,21:0:0:42,21:1496,717:-180.15,-58.2045,-45.5612,-121.971,0,-115.649	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/2:41:0,17,23:0:0:17,23:603,809:-115.132,-66.0004,-60.8829,-49.2734,0,-42.3497	1/1:31:0,29,2:0:0:29,2:1036,70:-93.2036,-8.72987,0,-87.5086,-2.68453,-86.9065	1/1:21:0,21,0:0:0:21,0:734,0:-66.3801,-6.32163,0,-66.3801,-6.32163,-66.3801	1/2:79:0,43,36:0:0:43,36:1540,1222:-225.042,-99.4412,-86.4969,-125.949,0,-115.112	1/2:107:0,61,46:0:0:61,46:2196,1562:-306.214,-127.02,-108.658,-179.542,0,-165.695	1/2:23:0,13,10:0:0:13,10:468,340:-66.1012,-27.9034,-23.99,-38.5463,0,-35.536	1/2:161:0,88,73:0:0:88,73:3144,2497:-459.347,-203,-176.51,-256.695,0,-234.72	1/1:44:0,44,0:0:0:44,0:1571,0:-141.681,-13.2453,0,-141.681,-13.2453,-141.681	1/1:34:0,34,0:0:0:34,0:1216,0:-109.747,-10.235,0,-109.747,-10.235,-109.747	1/2:4:0,2,2:0:0:2,2:72,67:-11.6483,-5.76098,-5.15892,-6.23466,0,-5.6326	1/2:11:0,6,5:0:0:6,5:216,179:-32.5808,-14.9552,-13.1491,-17.9843,0,-16.4792	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:4:0,2,2:0:0:2,2:72,65:-11.4635,-5.57123,-4.96917,-6.23466,0,-5.6326	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/1:126:0,125,0:0:0:125,0:4473,0:-402.456,-37.6288,0,-402.456,-37.6288,-402.456	1/1:28:0,27,1:0:0:27,1:968,35:-87.0872,-8.12781,0,-84.2398,-4.93021,-83.9387	1/2:24:0,14,10:0:0:14,10:504,347:-69.6851,-28.5537,-24.3393,-41.4837,0,-38.4734	.:.:.:.:.:.:.:.	1/2:63:0,31,32:0:0:31,32:1099,1090:-178.311,-88.771,-79.4391,-89.8875,0,-80.2546	1/1:91:0,91,0:0:0:91,0:3251,0:-292.674,-27.3937,0,-292.674,-27.3937,-292.674	1/1:40:0,40,0:0:0:40,0:1440,0:-129.898,-12.0412,0,-129.898,-12.0412,-129.898	1/1:38:0,38,0:0:0:38,0:1368,0:-123.421,-11.4391,0,-123.421,-11.4391,-123.421	1/1:35:0,35,0:0:0:35,0:1252,0:-112.985,-10.5361,0,-112.985,-10.5361,-112.985	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/2:37:0,19,18:0:0:19,18:676,626:-106.343,-51.2464,-45.5268,-55.4484,0,-50.0299	1/1:70:0,70,0:0:0:70,0:2492,0:-224.534,-21.0721,0,-224.534,-21.0721,-224.534	1/2:48:0,23,25:0:0:23,25:828,860:-137.756,-70.1873,-63.2636,-67.9204,0,-60.3947	1/1:67:0,67,0:0:0:67,0:2408,0:-216.976,-20.169,0,-216.976,-20.169,-216.976	1/1:77:0,77,0:0:0:77,0:2745,0:-247.291,-23.1793,0,-247.291,-23.1793,-247.291	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:59:0,31,28:0:0:31,28:1112,947:-167.82,-77.1088,-67.7769,-91.0594,0,-82.6306	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	0/1:4:1,3,0:1:28:3,0:108,0:-8.87105,0,-1.59561,-9.17208,-2.4987,-11.3708	1/1:56:0,56,0:0:0:56,0:2012,0:-181.353,-16.8577,0,-181.353,-16.8577,-181.353	1/1:14:0,14,0:0:0:14,0:495,0:-44.883,-4.21442,0,-44.883,-4.21442,-44.883	2/2:4:0,0,4:0:0:0,4:0,132:-12.206,-12.206,-12.206,-1.20412,-1.20412,0	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0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chr11	31316171	.	G	A	97897.6	PASS	AB=0.488275;ABP=7.03291;AC=134;AF=0.72043;AN=186;AO=4711;CIGAR=1X;DP=6449;DPB=6449;DPRA=0;EPP=10232.8;EPPR=3768.34;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9987;MQMR=59.9942;NS=93;NUMALT=1;ODDS=1.5145;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168181;QR=62003;RO=1734;RPL=4711;RPP=10232.8;RPPR=3768.34;RPR=0;RUN=1;SAF=0;SAP=10232.8;SAR=4711;SRF=0;SRP=3768.34;SRR=1734;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:0,64:0:0:64:2280:-205.462,-19.2659,0	0/1:53:29,24:29:1040:24:851:-60.9555,0,-77.9598	0/1:102:61,41:61:2183:41:1462:-101.171,0,-166.03	0/1:94:52,42:52:1860:42:1508:-107.718,0,-139.383	0/1:46:18,28:18:636:28:1008:-77.189,0,-43.7207	0/1:35:12,23:12:432:23:824:-63.9473,0,-28.6851	1/1:82:0,82:0:0:82:2917:-262.764,-24.6845,0	0/1:94:41,53:41:1468:53:1904:-143.341,0,-104.119	0/1:93:30,63:30:1068:63:2241:-173.956,0,-68.4363	1/1:40:0,40:0:0:40:1421:-128.185,-12.0412,0	0/1:51:24,27:24:860:27:964:-71.7243,0,-62.3693	1/1:87:0,87:0:0:87:3096:-278.866,-26.1896,0	0/1:91:53,38:53:1908:38:1368:-96.0271,0,-144.604	1/1:78:0,78:0:0:78:2762:-248.822,-23.4803,0	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:59:0,59:0:0:59:2115:-190.619,-17.7608,0	0/1:37:17,20:17:608:20:716:-53.6296,0,-43.9139	0/1:38:13,25:13:455:25:892:-69.1605,0,-29.8428	1/1:40:2,38:2:72:38:1368:-116.584,-5.20448,0	1/1:255:0,254:0:0:254:9021:-811.659,-76.4616,0	0/1:82:33,49:33:1172:49:1760:-133.999,0,-81.103	1/1:57:0,57:0:0:57:2017:-181.801,-17.1587,0	0/1:69:27,42:27:964:42:1512:-115.604,0,-66.3058	1/1:42:2,40:2:72:40:1423:-121.53,-5.80654,0	1/1:89:0,88:0:0:88:3133:-281.984,-26.4906,0	0/1:155:87,68:87:3108:68:2433:-172.565,0,-233.288	0/1:205:128,77:128:4595:77:2745:-185.58,0,-352.001	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/1:135:87,48:87:3112:48:1670:-109.942,0,-239.668	1/1:74:2,72:2:72:72:2554:-223.271,-15.4395,0	1/1:77:2,75:2:68:75:2688:-235.707,-16.7216,0	0/1:10:8,1:8:288:1:36:-0.529178,0,-23.1983	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:22:2,20:2:72:20:705:-57.1501,0,-0.214062	1/1:169:0,169:0:0:169:6035:-543.254,-50.8741,0	1/1:81:0,81:0:0:81:2866:-258.176,-24.3834,0	0/1:57:29,28:29:1044:28:991:-72.3448,0,-77.1161	.:.:.:.:.:.:.:.	0/1:99:54,45:54:1944:45:1608:-115.208,0,-145.434	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:81:0,81:0:0:81:2885:-259.885,-24.3834,0	1/1:50:0,50:0:0:50:1782:-160.661,-15.0515,0	1/1:56:0,56:0:0:56:2003:-180.543,-16.8577,0	1/1:104:0,104:0:0:104:3684:-331.762,-31.3071,0	0/1:45:13,32:13:468:32:1148:-90.0835,0,-28.9133	1/1:122:0,122:0:0:122:4323:-389.245,-36.7257,0	0/1:70:25,45:25:896:45:1612:-124.298,0,-59.8883	1/1:77:0,77:0:0:77:2734:-246.3,-23.1793,0	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:107:61,46:61:2180:46:1656:-117.118,0,-164.256	1/1:57:0,57:0:0:57:2021:-182.161,-17.1587,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:70:0,70:0:0:70:2500:-225.253,-21.0721,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:52:26,26:26:936:26:928:-68.1847,0,-68.9059	0/1:115:43,72:43:1540:72:2592:-198.91,0,-104.275	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:83:41,42:41:1464:42:1512:-111.389,0,-107.071	0/1:84:44,40:44:1580:40:1432:-103.891,0,-117.205	0/1:30:21,9:21:756:9:320:-20.1115,0,-59.3363	0/1:48:21,27:21:752:27:953:-71.6339,0,-53.5568	1/1:79:1,78:1:36:78:2785:-247.291,-20.1831,0	1/1:84:0,84:0:0:84:3003:-270.501,-25.2865,0	0/1:42:16,26:16:559:26:936:-71.9162,0,-37.9943	0/1:37:17,20:17:612:20:720:-53.9907,0,-44.2753	0/1:51:25,25:25:896:25:900:-66.0538,0,-65.6876	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:130:0,130:0:0:130:4647:-418.392,-39.1339,0	0/1:65:37,28:37:1312:28:1008:-71.4694,0,-98.8147	0/1:106:56,50:56:1991:50:1788:-129.293,0,-147.554	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	0/1:104:56,48:56:1991:48:1716:-123.418,0,-148.156	1/1:56:1,55:1:36:55:1968:-173.797,-13.2594,0	0/1:14:8,6:8:284:6:216:-15.5761,0,-21.6889	0/1:76:42,34:42:1484:34:1201:-85.5154,0,-110.973	0/1:62:41,21:41:1456:21:756:-49.7034,0,-112.672	1/1:120:1,119:1:36:119:4260:-379.98,-32.5253,0	0/1:50:25,25:25:900:25:896:-65.9089,0,-66.2695	0/1:64:23,41:23:828:41:1463:-112.699,0,-55.5782	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:111:1,110:1:36:110:3928:-350.115,-29.8161,0	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/1:68:35,33:35:1252:33:1188:-86.7586,0,-92.515	0/1:67:35,32:35:1256:32:1142:-82.9205,0,-93.1763	0/1:51:25,26:25:879:26:928:-68.4857,0,-64.0743	0/1:107:60,47:60:2156:47:1684:-119.637,0,-162.097	0/1:83:59,24:59:2098:24:847:-51.5632,0,-164.103	1/1:91:0,91:0:0:91:3246:-292.358,-27.3937,0	1/1:95:0,95:0:0:95:3420:-308.012,-28.5979,0
chr11	31317842	.	C	A	28812.5	PASS	AB=0.520252;ABP=16.0272;AC=51;AF=0.274194;AN=186;AO=1913;CIGAR=1X;DP=6472;DPB=6472;DPRA=1.25598;EPP=4087.84;EPPR=9714.6;GTI=0;LEN=1;MEANALT=1.01786;MQM=37.7904;MQMR=59.9521;NS=93;NUMALT=1;ODDS=1.29068;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68617;QR=162866;RO=4552;RPL=8;RPP=4087.84;RPPR=9714.6;RPR=1905;RUN=1;SAF=1913;SAP=4157.04;SAR=0;SRF=4552;SRP=9887.55;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5012	0/1:100:52,48:52:1868:48:1728:-111.242,0,-138.296	0/1:85:52,33:52:1860:33:1173:-68.9493,0,-142.091	0/1:136:48,88:48:1720:88:3164:-230.391,0,-114.145	0/1:46:22,24:22:780:24:845:-57.3616,0,-56.6757	0/1:38:13,25:13:464:25:892:-61.7394,0,-30.6584	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:117:52,65:52:1872:65:2336:-154.59,0,-133.539	0/1:33:16,17:16:576:17:608:-40.1397,0,-42.241	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.805	0/1:31:18,13:18:640:13:468:-31.0529,0,-48.5955	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/1:52:24,28:24:864:28:1004:-64.3358,0,-62.429	0/0:86:85,0:85:3056:0:0:0,-25.5875,-274.909	0/0:52:51,0:51:1823:0:0:0,-15.3525,-163.991	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.356	0/1:53:33,20:33:1176:20:716:-43.2485,0,-90.1756	0/1:55:28,27:28:1008:27:972:-61.01,0,-74.4797	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:95:95,0:95:3388:0:0:0,-28.5978,-305.134	0/1:92:53,39:53:1893:39:1404:-91.5487,0,-142.951	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.954	0/1:69:41,28:41:1468:28:1004:-64.9814,0,-111.645	0/1:90:77,13:77:2743:13:468:-12.1286,0,-220.018	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/1:218:87,131:87:3101:131:4714:-341.061,0,-213.692	0/1:78:34,44:34:1224:44:1575:-109.938,0,-86.9867	0/1:19:14,5:14:500:5:180:-8.84896,0,-39.6166	0/1:149:78,71:78:2791:71:2548:-177.571,0,-206.576	0/0:167:162,5:162:5784:5:165:0,-35.9827,-506.38	0/0:77:75,2:75:2688:2:72:0,-16.6158,-235.596	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:7:1,6:1:36:6:216:-16.5246,0,-1.49106	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:6:4,2:4:144:2:72:-4.46197,0,-11.5074	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:133:133,0:133:4767:0:0:0,-40.037,-429.185	0/0:163:163,0:163:5828:0:0:0,-49.0679,-524.634	0/1:25:7,18:7:252:18:633:-44.2211,0,-15.5032	.:.:.:.:.:.:.:.	0/1:141:73,68:73:2616:68:2448:-161.645,0,-193.238	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:82:82,0:82:2932:0:0:0,-24.6845,-264.115	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:79:79,0:79:2823:0:0:0,-23.7814,-254.309	0/1:132:56,76:56:2012:76:2732:-184.359,0,-141.609	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.356	0/1:107:47,60:47:1688:60:2152:-150.872,0,-119.997	0/0:121:121,0:121:4328:0:0:0,-36.4246,-389.696	0/0:74:73,1:73:2601:1:36:0,-18.7735,-230.834	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:124:60,64:60:2160:64:2289:-149.396,0,-157.303	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:101:100,1:100:3558:1:36:0,-27.2804,-317.305	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:2:1,1:1:36:1:36:-2.90064,0,-2.99621	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:78:28,50:28:1008:50:1781:-125.748,0,-67.556	0/1:115:62,53:62:2219:53:1908:-129.851,0,-165.355	0/1:4:3,1:3:104:1:36:-2.25037,0,-8.49869	0/1:165:77,88:77:2760:88:3145:-223.444,0,-198.961	0/1:107:56,51:56:2008:51:1824:-124.617,0,-148.783	0/1:101:45,56:45:1603:56:2016:-137.158,0,-114.153	0/1:76:26,50:26:936:50:1800:-132.799,0,-61.6812	0/0:106:102,0:102:3668:0:0:0,-30.7051,-329.944	0/0:168:165,3:165:5874:3:108:0,-40.9005,-519.09	0/1:16:13,3:13:468:3:108:-4.6688,0,-37.6432	0/1:43:23,20:23:815:20:701:-45.5297,0,-60.7265	0/1:92:48,44:48:1728:44:1583:-108.902,0,-128.111	0/1:28:13,15:13:468:15:540:-38.4113,0,-34.0308	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/1:46:18,28:18:644:28:1008:-69.8707,0,-44.4432	0/1:115:41,74:41:1459:74:2656:-185.476,0,-96.9868	0/0:117:117,0:117:4188:0:0:0,-35.2205,-377.056	0/1:115:40,75:40:1427:75:2696:-184.217,0,-94.0898	0/0:72:72,0:72:2576:0:0:0,-21.6742,-232.09	0/1:5:3,2:3:108:2:72:-4.763,0,-8.57002	0/1:90:45,45:45:1601:45:1616:-109.947,0,-117.281	0/1:84:40,44:40:1440:44:1565:-104.295,0,-104.611	0/0:131:131,0:131:4693:0:0:0,-39.4349,-422.51	0/1:84:39,44:39:1400:44:1584:-109.803,0,-100.963	0/1:59:29,30:29:1040:30:1080:-74.2492,0,-76.1536	0/0:63:63,0:63:2226:0:0:0,-18.9649,-200.601	0/0:88:88,0:88:3160:0:0:0,-26.4906,-284.624	0/1:36:21,15:21:756:15:540:-32.0823,0,-57.5301	0/1:54:25,29:25:892:29:1044:-68.3053,0,-64.3441	0/1:32:18,14:18:648:14:504:-32.2647,0,-49.0189	0/1:18:13,5:13:468:5:180:-10.1644,0,-37.0411	0/1:57:25,32:25:896:32:1152:-78.7377,0,-63.8016	0/1:29:10,19:10:351:19:684:-49.8964,0,-23.1968	0/0:75:75,0:75:2666:0:0:0,-22.5772,-240.154	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474
chr11	31317852	.	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chr11	31338272	.	A	G	91120.1	PASS	AB=0.507176;ABP=6.53215;AC=51;AF=0.271277;AN=188;AO=4025;CIGAR=1X;DP=13793;DPB=13793;DPRA=1.37135;EPP=20.6847;EPPR=11.8237;GTI=1;LEN=1;MEANALT=1.11667;MQM=59.9853;MQMR=59.9974;NS=94;NUMALT=1;ODDS=0.678411;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142524;QR=348828;RO=9757;RPL=4014;RPP=8647.9;RPPR=20629.2;RPR=11;RUN=1;SAF=2092;SAP=16.6493;SAR=1933;SRF=4915;SRP=4.1963;SRR=4842;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2323:0:0:0,-19.5669,-209.33	0/1:181:84,97:84:3016:97:3475:-258.474,0,-217.184	0/1:249:118,130:118:4236:130:4588:-338.21,0,-306.542	0/1:270:147,123:147:5257:123:4357:-311.027,0,-391.987	0/1:114:57,57:57:2040:57:2019:-147.665,0,-149.555	0/1:103:51,51:51:1820:51:1820:-133.163,0,-133.163	0/0:102:102,0:102:3630:0:0:0,-30.7051,-326.906	0/1:224:109,115:109:3896:115:4081:-300.045,0,-283.404	0/1:147:81,66:81:2889:66:2333:-165.975,0,-215.994	0/0:117:117,0:117:4185:0:0:0,-35.2205,-376.83	0/1:140:80,59:80:2864:59:2072:-144.692,0,-215.942	0/0:223:222,0:222:7916:0:0:0,-66.8287,-712.107	0/1:213:113,99:113:4036:99:3461:-247.66,0,-299.387	0/0:199:199,0:199:7145:0:0:0,-59.905,-643.102	0/0:180:180,0:180:6436:0:0:0,-54.1854,-579.325	0/0:153:153,0:153:5455:0:0:0,-46.0576,-491.078	0/1:153:78,75:78:2796:75:2658:-193.409,0,-205.822	0/1:142:76,66:76:2732:66:2312:-165.592,0,-203.376	0/0:105:105,0:105:3759:0:0:0,-31.6081,-338.509	0/0:181:181,0:181:6500:0:0:0,-54.4864,-585.082	0/1:240:117,123:117:4163:123:4391:-323.113,0,-302.605	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/1:111:53,58:53:1900:58:2046:-150.997,0,-137.864	0/0:72:70,2:70:2512:2:63:0,-15.691,-220.349	0/0:93:93,0:93:3335:0:0:0,-27.9958,-300.366	0/1:248:126,122:126:4520:122:4352:-317.198,0,-332.311	0/1:354:164,190:164:5848:190:6715:-497.868,0,-419.868	0/1:80:25,55:25:896:55:1941:-150.882,0,-56.878	0/1:297:133,164:133:4747:164:5830:-435.408,0,-337.983	0/0:128:125,3:125:4467:3:104:0,-28.829,-392.497	0/0:131:128,3:128:4573:3:108:0,-29.3598,-401.659	0/1:12:7,5:7:248:5:176:-12.5727,0,-19.0518	0/1:38:13,25:13:459:25:867:-66.9057,0,-30.2049	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:46:18,28:18:631:28:986:-75.2046,0,-43.2683	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:425:423,1:423:15147:1:36:0,-124.398,-1359.35	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/1:132:66,66:66:2350:66:2345:-171.572,0,-172.022	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:190:86,104:86:3084:104:3720:-277.806,0,-220.592	0/0:87:87,0:87:3107:0:0:0,-26.1896,-279.857	0/0:182:182,0:182:6507:0:0:0,-54.7875,-585.715	0/0:157:157,0:157:5596:0:0:0,-47.2617,-503.763	0/0:157:157,0:157:5623:0:0:0,-47.2617,-506.19	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/1:154:60,94:60:2148:94:3322:-252.842,0,-147.229	0/0:154:154,0:154:5448:0:0:0,-46.3586,-490.451	0/1:92:52,40:52:1872:40:1427:-101.032,0,-141.064	0/0:199:199,0:199:7127:0:0:0,-59.905,-641.487	0/0:179:179,0:179:6385:0:0:0,-53.8844,-574.74	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:162:88,73:88:3141:73:2557:-181.553,0,-234.089	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.491	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:156:155,0:155:5519:0:0:0,-46.6596,-496.608	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/1:17:7,10:7:248:10:352:-26.9007,0,-17.5467	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:140:57,83:57:2035:83:2921:-220.982,0,-141.277	0/1:224:129,95:129:4620:95:3366:-235.727,0,-348.533	0/1:18:6,12:6:212:12:416:-32.3516,0,-14.0063	0/1:136:73,63:73:2612:63:2243:-161.193,0,-194.388	0/1:255:105,150:105:3752:150:5303:-400.645,0,-261.118	0/1:110:53,57:53:1896:57:2028:-149.679,0,-137.805	0/1:143:72,71:72:2561:71:2512:-183.285,0,-187.692	0/0:156:154,2:154:5516:2:57:0,-41.5474,-491.152	0/0:193:192,1:192:6851:1:36:0,-54.5005,-613.061	0/1:114:61,53:61:2184:53:1867:-133.99,0,-162.509	0/1:127:59,68:59:2096:68:2408:-178.744,0,-150.679	0/1:199:101,98:101:3620:98:3508:-256.025,0,-266.1	0/1:39:16,23:16:576:23:806:-61.118,0,-40.4348	0/0:113:113,0:113:4034:0:0:0,-34.0164,-363.248	0/1:121:48,73:48:1709:73:2599:-197.732,0,-117.669	0/1:235:110,125:110:3939:125:4431:-328.221,0,-283.959	0/0:212:212,0:212:7608:0:0:0,-63.8184,-684.755	0/1:191:85,106:85:3032:106:3742:-279.485,0,-215.579	0/0:175:171,4:171:6093:4:144:0,-39.3666,-535.16	0/1:19:10,9:10:347:9:316:-23.0593,0,-25.844	0/1:164:84,80:84:2999:80:2849:-207.278,0,-220.773	0/1:181:90,91:90:3221:91:3202:-233.917,0,-235.624	0/0:229:229,0:229:8189:0:0:0,-68.9359,-737.022	0/1:215:123,92:123:4389:92:3270:-229.798,0,-330.461	0/1:200:101,99:101:3620:99:3523:-257.075,0,-265.799	0/0:181:181,0:181:6474:0:0:0,-54.4864,-582.745	0/0:346:336,10:336:12015:10:360:0,-71.4121,-1048.46	0/1:71:35,36:35:1241:36:1284:-94.4821,0,-90.6194	0/1:173:100,73:100:3584:73:2575:-179.833,0,-270.689	0/1:164:96,68:96:3418:68:2391:-166.077,0,-258.463	0/1:171:93,75:93:3320:75:2627:-185.745,0,-248.083	0/1:196:103,93:103:3699:93:3275:-235.971,0,-274.109	0/1:158:53,105:53:1895:105:3739:-289.149,0,-123.265	0/0:150:150,0:150:5380:0:0:0,-45.1545,-484.33	0/0:261:255,6:255:9136:6:212:0,-59.144,-802.788
chr11	31338285	.	C	T	32708.4	PASS	AB=0.496617;ABP=3.40694;AC=51;AF=0.271277;AN=188;AO=1992;CIGAR=1X;DP=6934;DPB=6934;DPRA=1.20184;EPP=4328.58;EPPR=10684.5;GTI=0;LEN=1;MEANALT=1.03636;MQM=59.9869;MQMR=59.9988;NS=94;NUMALT=1;ODDS=2.38135;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70613;QR=175542;RO=4939;RPL=1992;RPP=4328.58;RPPR=10693.2;RPR=0;RUN=1;SAF=0;SAP=4328.58;SAR=1992;SRF=1;SRP=10719.2;SRR=4938;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1446:0:0:0,-12.3422,-130.432	0/1:43:19,24:19:680:24:860:-64.7775,0,-48.5849	0/1:156:80,76:80:2846:76:2687:-195.11,0,-209.415	0/1:135:77,58:77:2726:58:2057:-144.761,0,-204.942	0/1:60:28,32:28:978:32:1137:-84.5752,0,-70.2669	0/1:36:21,15:21:752:15:516:-35.9263,0,-57.1692	0/0:44:44,0:44:1546:0:0:0,-13.2453,-139.428	0/1:90:50,40:50:1777:40:1376:-97.036,0,-133.118	0/1:76:44,32:44:1584:32:1137:-79.7587,0,-119.973	0/0:34:34,0:34:1194:0:0:0,-10.235,-107.761	0/1:92:58,34:58:2024:34:1197:-80.3371,0,-154.731	0/0:147:147,0:147:5184:0:0:0,-44.2514,-466.699	0/1:130:63,67:63:2260:67:2354:-172.981,0,-164.529	0/0:115:115,0:115:4109:0:0:0,-34.6184,-369.994	0/0:91:91,0:91:3257:0:0:0,-27.3937,-293.349	0/0:91:91,0:91:3253:0:0:0,-27.3937,-292.989	0/1:44:27,17:27:968:17:608:-41.8067,0,-74.192	0/1:48:22,26:22:773:26:932:-69.7494,0,-55.44	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:74:74,0:74:2645:0:0:0,-22.2762,-238.295	0/1:85:48,37:48:1712:37:1306:-92.2426,0,-128.778	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/1:98:49,49:49:1730:49:1741:-127.471,0,-126.48	0/0:24:23,1:23:809:1:36:0,-3.62644,-69.53	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:100:52,48:52:1834:48:1679:-121.288,0,-135.234	0/1:207:86,121:86:3077:121:4304:-325.223,0,-214.843	0/1:39:11,28:11:377:28:999:-78.485,0,-22.5178	0/1:165:82,83:82:2884:83:2923:-213.632,0,-210.122	0/0:42:42,0:42:1463:0:0:0,-12.6433,-131.958	0/0:76:74,2:74:2630:2:57:0,-17.465,-231.531	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/1:35:12,23:12:428:23:813:-62.9531,0,-28.3228	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:46:19,27:19:650:27:935:-70.6095,0,-44.969	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:189:189,0:189:6732:0:0:0,-56.8947,-605.951	0/0:44:44,0:44:1561:0:0:0,-13.2453,-140.78	0/1:85:39,46:39:1385:46:1641:-122.389,0,-99.3593	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:69:33,36:33:1173:36:1284:-95.091,0,-85.1045	0/0:57:57,0:57:2003:0:0:0,-17.1587,-180.538	0/0:114:114,0:114:4019:0:0:0,-34.3174,-361.899	0/0:60:60,0:60:2125:0:0:0,-18.0618,-191.517	0/0:66:66,0:66:2349:0:0:0,-19.868,-211.668	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:66:30,36:30:1072:36:1296:-97.076,0,-76.9245	0/0:90:90,0:90:3206:0:0:0,-27.0927,-288.76	0/1:40:21,19:21:752:19:684:-49.8491,0,-55.9651	0/0:90:90,0:90:3194:0:0:0,-27.0927,-287.682	0/0:54:54,0:54:1906:0:0:0,-16.2556,-171.814	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:87:50,37:50:1800:37:1302:-91.2877,0,-136.093	0/0:39:39,0:39:1347:0:0:0,-11.7402,-121.522	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:80:80,0:80:2827:0:0:0,-24.0824,-254.665	0/0:39:39,0:39:1351:0:0:0,-11.7402,-121.882	0/1:14:7,7:7:252:7:248:-18.4498,0,-18.8145	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:81:33,48:33:1169:48:1716:-130.342,0,-81.1319	0/1:113:64,49:64:2281:49:1749:-123.677,0,-171.534	0/1:14:5,9:5:180:9:320:-24.927,0,-12.3376	0/1:53:29,24:29:1036:24:841:-60.0518,0,-77.5993	0/1:82:40,42:40:1421:42:1482:-108.986,0,-103.501	0/1:61:30,31:30:1080:31:1096:-80.5871,0,-79.1504	0/1:73:39,34:39:1400:34:1194:-85.786,0,-104.324	0/0:77:77,0:77:2734:0:0:0,-23.1793,-246.3	0/0:107:107,0:107:3833:0:0:0,-32.2102,-345.164	0/1:99:52,47:52:1860:47:1620:-116.278,0,-137.878	0/1:52:25,27:25:877:27:949:-70.0692,0,-63.5916	0/1:55:34,21:34:1209:21:756:-51.8106,0,-92.5575	0/1:26:12,14:12:417:14:504:-37.8713,0,-30.0334	0/0:67:67,0:67:2321:0:0:0,-20.169,-209.143	0/1:56:21,35:21:752:35:1230:-94.1423,0,-51.1486	0/1:142:65,77:65:2317:77:2752:-205.176,0,-166.042	0/0:130:130,0:130:4649:0:0:0,-39.1339,-418.571	0/1:79:36,42:36:1273:42:1482:-109.869,0,-91.0698	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/1:71:32,39:32:1137:39:1377:-102.854,0,-81.2638	0/1:79:37,42:37:1332:42:1459:-107.817,0,-96.401	0/0:112:112,0:112:3971:0:0:0,-33.7154,-357.579	0/1:71:44,27:44:1565:27:964:-65.7037,0,-119.767	0/1:115:58,57:58:2084:57:2052:-150.333,0,-153.212	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:141:136,4:136:4869:4:144:0,-29.1904,-425.047	0/1:30:12,18:12:432:18:644:-49.2515,0,-30.1903	0/1:92:51,41:51:1817:41:1464:-104.361,0,-136.115	0/1:98:60,38:60:2141:38:1360:-93.1997,0,-163.455	0/1:137:77,60:77:2756:60:2156:-153.066,0,-207.041	0/1:153:78,75:78:2800:75:2681:-195.476,0,-206.182	0/1:85:31,54:31:1097:54:1940:-149.289,0,-73.4505	0/0:64:63,0:63:2245:0:0:0,-18.9649,-201.952	0/0:129:126,3:126:4460:3:108:0,-28.7577,-391.493
chr11	31489433	.	G	C	105961	PASS	AB=0.481233;ABP=15.3175;AC=137;AF=0.728723;AN=188;AO=5032;CIGAR=1X;DP=7138;DPB=7138;DPRA=6.96676;EPP=10465.9;EPPR=4489.54;GTI=1;LEN=1;MEANALT=1.07527;MQM=59.41;MQMR=59.9828;NS=94;NUMALT=1;ODDS=0.523154;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179756;QR=74799;RO=2098;RPL=4978;RPP=10465.9;RPPR=4489.54;RPR=54;RUN=1;SAF=0;SAP=10929.9;SAR=5032;SRF=0;SRP=4558.76;SRR=2098;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:49:0,49:0:0:49:1756:-158.323,-14.7505,0	0/1:57:28,29:28:988:29:1040:-76.7547,0,-72.0752	0/1:141:66,75:66:2349:75:2676:-197.866,0,-169.188	0/1:102:42,60:42:1487:60:2137:-161.603,0,-103.418	0/1:51:33,18:33:1180:18:648:-43.2994,0,-91.1555	0/1:69:30,39:30:1076:39:1400:-105.52,0,-76.3818	1/1:62:0,62:0:0:62:2208:-198.976,-18.6639,0	0/1:80:48,31:48:1705:31:1104:-75.3047,0,-129.593	0/1:49:30,19:30:1067:19:673:-46.1265,0,-81.5907	1/1:42:0,41:0:0:41:1468:-132.046,-12.3422,0	0/1:108:54,54:54:1936:54:1940:-141.58,0,-142.005	1/1:86:0,86:0:0:86:3073:-276.651,-25.8886,0	0/1:63:32,31:32:1148:31:1112:-81.4088,0,-84.6649	1/1:110:0,110:0:0:110:3947:-355.394,-33.1133,0	1/1:53:0,53:0:0:53:1904:-171.621,-15.9546,0	1/1:76:0,76:0:0:76:2712:-244.32,-22.8783,0	0/1:48:32,16:32:1129:16:559:-36.1849,0,-87.4669	0/1:43:26,17:26:936:17:608:-42.0901,0,-71.6152	1/1:35:1,34:1:36:34:1224:-105.888,-6.93778,0	1/1:133:0,133:0:0:133:4726:-425.466,-40.037,0	0/1:109:51,58:51:1828:58:2069:-153.636,0,-131.989	1/1:107:0,107:0:0:107:3825:-344.425,-32.2102,0	0/1:84:54,30:54:1923:30:1051:-69.6066,0,-148.06	0/1:20:2,16:2:68:16:572:-46.0225,0,-0.689315	1/1:58:0,58:0:0:58:2076:-187.108,-17.4597,0	0/1:164:78,85:78:2770:85:3052:-225.441,0,-200.114	0/1:198:109,89:109:3879:89:3192:-226.977,0,-289.702	0/1:28:18,10:18:644:10:360:-24.3155,0,-49.8618	0/1:201:84,117:84:3008:117:4184:-315.856,0,-210.444	1/1:101:1,100:1:36:100:3577:-318.388,-26.8058,0	1/1:75:0,75:0:0:75:2667:-239.865,-22.5773,0	0/1:19:6,13:6:212:13:457:-35.7145,0,-13.7052	0/1:29:20,9:20:708:9:324:-20.776,0,-55.3157	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:26:4,22:4:144:22:784:-63.0235,0,-5.48684	1/1:39:0,39:0:0:39:1396:-125.625,-11.7402,0	1/1:171:0,171:0:0:171:6106:-549.234,-51.4761,0	1/1:114:0,114:0:0:114:4080:-367.271,-34.3174,0	0/1:97:58,39:58:2063:39:1396:-96.533,0,-156.741	1/1:13:0,13:0:0:13:468:-42.4402,-3.91339,0	0/1:94:39,55:39:1389:55:1959:-148.275,0,-97.0101	1/1:45:0,45:0:0:45:1616:-145.725,-13.5464,0	1/1:86:0,86:0:0:86:3059:-275.186,-25.8886,0	1/1:47:0,47:0:0:47:1692:-152.565,-14.1484,0	1/1:51:0,51:0:0:51:1832:-165.154,-15.3525,0	1/1:63:1,62:1:36:62:2220:-196.465,-15.3666,0	0/1:83:36,47:36:1269:47:1684:-126.539,0,-89.5253	1/1:87:0,86:0:0:86:3027:-272.294,-25.8886,0	0/1:54:28,26:28:1004:26:928:-67.5826,0,-74.4121	1/1:80:0,80:0:0:80:2835:-255.315,-24.0824,0	1/1:74:0,74:0:0:74:2625:-236.489,-22.2762,0	1/1:14:0,14:0:0:14:492:-44.6,-4.21442,0	0/1:139:70,69:70:2476:69:2476:-181.24,0,-181.249	1/1:73:0,73:0:0:73:2605:-234.635,-21.9752,0	1/1:15:0,15:0:0:15:536:-48.5666,-4.51545,0	1/1:101:1,100:1:36:100:3556:-316.374,-26.8058,0	1/1:34:0,33:0:0:33:1166:-104.826,-9.93399,0	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	1/1:19:0,19:0:0:19:661:-59.8116,-5.71957,0	0/1:87:56,31:56:2008:31:1112:-74.1687,0,-154.804	0/1:128:72,56:72:2588:56:2008:-142.366,0,-194.637	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	0/1:107:46,61:46:1627:61:2196:-165.422,0,-114.508	0/1:101:50,51:50:1783:51:1821:-133.748,0,-130.348	0/1:56:29,27:29:1036:27:972:-70.8482,0,-76.6962	0/1:59:20,39:20:707:39:1393:-107.879,0,-46.1938	1/1:81:0,81:0:0:81:2879:-259.32,-24.3834,0	1/1:148:0,148:0:0:148:5263:-473.396,-44.5524,0	0/1:88:50,38:50:1783:38:1368:-96.9256,0,-134.261	1/1:62:0,62:0:0:62:2210:-199.01,-18.6639,0	1/1:43:0,43:0:0:43:1543:-139.161,-12.9443,0	0/1:23:6,17:6:212:17:612:-48.485,0,-12.5011	1/1:102:0,102:0:0:102:3645:-328.036,-30.7051,0	0/1:57:23,34:23:824:34:1220:-92.7415,0,-57.3246	0/1:92:55,36:55:1956:36:1277:-87.4236,0,-148.562	1/1:116:0,116:0:0:116:4159:-374.466,-34.9195,0	0/1:171:98,73:98:3489:73:2603:-183.012,0,-262.745	1/1:63:0,63:0:0:63:2256:-202.483,-18.9649,0	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	0/1:59:26,33:26:936:33:1188:-89.4586,0,-66.7987	0/1:77:41,36:41:1464:36:1296:-93.7565,0,-108.877	1/1:67:0,67:0:0:67:2408:-216.95,-20.169,0	0/1:63:42,21:42:1512:21:750:-48.8571,0,-117.409	0/1:82:40,42:40:1424:42:1508:-111.328,0,-103.773	1/1:32:0,32:0:0:32:1144:-103.266,-9.63296,0	1/1:102:1,101:1:36:101:3612:-321.681,-27.1068,0	0/1:11:6,5:6:207:5:180:-13.2324,0,-15.6556	0/1:77:43,34:43:1527:34:1220:-86.8945,0,-114.543	0/1:91:52,39:52:1864:39:1400:-98.8891,0,-140.646	0/1:122:77,45:77:2764:45:1612:-107.866,0,-212.275	0/1:235:129,106:129:4590:106:3768:-268.512,0,-342.524	0/1:44:31,13:31:1104:13:464:-28.8498,0,-86.4253	1/1:102:0,102:0:0:102:3644:-328.144,-30.7051,0	1/1:69:0,69:0:0:69:2465:-222.009,-20.7711,0
chr11	31496860	.	CTTC	CTTT,TTTT	548530	PASS	AB=0.484019,0.510935;ABP=26.7471,14.1226;AC=139,49;AF=0.739362,0.260638;AN=188;AO=14652,5510;CIGAR=3M1X,1X2M1X;DP=20255;DPB=20257.2;DPRA=0,1.14584;EPP=31819.4,11967.8;EPPR=24.725;GTI=0;LEN=1,4;MEANALT=2.41489,2.90164;MQM=59.8675,56.1535;MQMR=60;NS=94;NUMALT=2;ODDS=2.09966;PAIRED=0,0;PAIREDR=0;PAO=0,9;PQA=0,208;PQR=0;PRO=0;QA=523070,192716;QR=345;RO=10;RPL=7415,2969;RPP=7.70597,75.2025;RPPR=6.48466;RPR=7237,2541;RUN=1,1;SAF=7415,2969;SAP=7.70597,75.2025;SAR=7237,2541;SRF=3;SRP=6.48466;SRR=7;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:89:0,88,0:0:0:88,0:3092,0:-278.213,-26.4906,0,-278.213,-26.4906,-278.213	1/2:471:0,215,254:0:0:215,254:7691,8815:-1341.6,-714.455,-649.733,-627.201,0,-550.739	1/2:181:0,77,104:0:0:77,104:2751,3664:-522.027,-297.744,-274.565,-224.452,0,-193.145	1/2:506:0,249,255:0:0:249,255:8894,8853:-1443.85,-718.76,-643.804,-725.164,0,-648.402	1/2:180:0,79,101:0:0:79,101:2806,3545:-517.178,-288.537,-264.756,-228.994,0,-198.59	1/2:139:0,68,71:0:0:68,71:2420,2496:-400.382,-203.257,-182.787,-197.479,0,-176.106	1/1:257:0,255,1:0:0:255,1:9110,36:-819.371,-76.7627,0,-816.434,-73.7703,-816.133	1/2:513:0,242,266:0:0:242,266:8655,9349:-1463.92,-758.867,-686.018,-705.099,0,-625.025	1/2:235:0,134,100:0:0:134,100:4781,3516:-675.218,-285.48,-245.142,-389.791,0,-359.688	1/1:262:0,262,0:0:0:262,0:9364,0:-842.7,-78.8699,0,-842.7,-78.8699,-842.7	1/2:138:0,74,62:0:0:74,62:2635,2147:-388.925,-174.157,-151.88,-214.798,0,-196.134	1/1:224:0,224,0:0:0:224,0:7985,0:-718.646,-67.4307,0,-718.646,-67.4307,-718.646	1/2:193:0,94,99:0:0:94,99:3354,3488:-557.328,-283.927,-255.63,-273.755,0,-243.953	1/1:155:0,155,0:0:0:155,0:5547,0:-499.3,-46.6597,0,-499.3,-46.6597,-499.3	1/1:180:0,180,0:0:0:180,0:6443,0:-579.954,-54.1854,0,-579.954,-54.1854,-579.954	1/1:173:0,171,1:0:0:171,1:6113,36:-549.896,-51.4761,0,-546.96,-48.5397,-546.659	1/2:154:0,71,81:0:0:71,81:2521,2791:-431.685,-226.289,-204.916,-205.473,0,-181.089	1/2:161:1,81,79:1:30:81,79:2881,2789:-458.931,-224.45,-202.464,-232.523,0,-211.14	1/1:104:0,103,0:0:0:103,0:3682,0:-331.352,-31.0061,0,-331.352,-31.0061,-331.352	1/1:452:0,450,0:0:0:450,0:16073,0:-1445.93,-135.464,0,-1445.93,-135.464,-1445.93	1/2:395:0,186,207:0:0:186,207:6658,7246:-1131.58,-588.64,-532.648,-543.039,0,-480.725	1/1:183:0,180,2:0:0:180,2:6420,71:-577.543,-54.1854,0,-571.764,-48.3829,-571.162	1/2:190:0,86,104:0:0:86,104:3061,3610:-543.127,-293.648,-267.76,-249.83,0,-218.523	1/1:258:0,234,22:0:0:234,22:8367,773:-752.661,-70.441,0,-689.766,-7.48041,-683.144	1/1:112:0,112,0:0:0:112,0:3997,0:-359.892,-33.7154,0,-359.892,-33.7154,-359.892	1/2:780:0,368,409:0:0:368,409:13184,14306:-2237.72,-1162.68,-1051.9,-1075.11,0,-951.986	1/2:434:0,213,220:0:0:213,220:7604,7729:-1248.23,-628.334,-564.214,-619.965,0,-553.738	1/2:69:0,24,44:0:0:24,44:864,1534:-195.066,-124.569,-117.344,-70.4939,0,-57.2486	1/2:651:0,290,360:0:0:290,360:10370,12645:-1873.84,-1028.28,-940.979,-845.552,0,-737.181	1/1:200:0,194,6:0:0:194,6:6893,215:-619.953,-58.3998,0,-602.55,-40.6409,-600.744	1/1:288:0,288,0:0:0:288,0:10246,0:-922.038,-86.6966,0,-922.038,-86.6966,-922.038	1/2:29:0,26,3:0:0:26,3:921,106:-84.0012,-8.97589,-1.14911,-75.3783,0,-74.4752	1/2:39:0,14,25:0:0:14,25:504,855:-110.8,-69.679,-65.4645,-41.4744,0,-33.9487	1/1:7:0,6,0:0:0:6,0:212,0:-19.1344,-1.80618,0,-19.1344,-1.80618,-19.1344	1/2:23:0,13,10:0:0:13,10:464,341:-65.5166,-27.6782,-23.7648,-38.1841,0,-35.1738	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:529:0,528,1:0:0:528,1:18898,36:-1700.01,-158.944,0,-1697.08,-155.649,-1696.78	1/1:348:0,344,1:0:0:344,1:12208,36:-1098.13,-103.554,0,-1095.2,-100.618,-1094.9	1/2:170:0,95,75:0:0:95,75:3408,2637:-492.324,-214.635,-186.037,-278.043,0,-255.466	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:277:0,138,138:0:0:138,138:4933,4849:-796.054,-394.126,-352.584,-401.922,0,-360.38	1/1:109:0,109,0:0:0:109,0:3920,0:-352.991,-32.8123,0,-352.991,-32.8123,-352.991	1/1:315:0,314,0:0:0:314,0:11224,0:-1009.73,-94.5234,0,-1009.73,-94.5234,-1009.73	1/1:247:0,244,0:0:0:244,0:8739,0:-786.199,-73.4513,0,-786.199,-73.4513,-786.199	1/1:182:0,181,0:0:0:181,0:6413,0:-576.959,-54.4864,0,-576.959,-54.4864,-576.959	1/1:194:1,192,0:1:36:192,0:6868,0:-614.625,-54.8204,0,-614.926,-57.7978,-617.863	1/2:226:0,97,129:0:0:97,129:3471,4502:-648.585,-365.54,-336.34,-283.398,0,-244.565	1/1:407:0,407,0:0:0:407,0:14548,0:-1309.03,-122.519,0,-1309.03,-122.519,-1309.03	1/2:250:0,100,149:0:0:100,149:3573,5268:-719.788,-428.483,-398.38,-291.37,0,-246.517	1/1:256:0,256,0:0:0:256,0:9156,0:-824.009,-77.0637,0,-824.009,-77.0637,-824.009	1/1:331:0,331,0:0:0:331,0:11836,0:-1065.06,-99.6409,0,-1065.06,-99.6409,-1065.06	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:198:0,102,94:0:0:102,94:3641,3247:-559.682,-262.851,-232.146,-296.875,0,-268.578	1/1:87:0,85,1:0:0:85,1:3051,36:-274.465,-25.5876,0,-271.533,-22.6466,-271.232	1/1:19:0,19,0:0:0:19,0:665,0:-60.1736,-5.71957,0,-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chr11	31499544	.	A	G	80457.7	PASS	AB=0.519831;ABP=11.881;AC=135;AF=0.733696;AN=184;AO=3844;CIGAR=1X;DP=5109;DPB=5109;DPRA=6.22711;EPP=8350.15;EPPR=2736.89;GTI=1;LEN=1;MEANALT=1.06593;MQM=59.5411;MQMR=59.9261;NS=92;NUMALT=1;ODDS=3.7777;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=137460;QR=45073;RO=1259;RPL=3844;RPP=8350.15;RPPR=2736.89;RPR=0;RUN=1;SAF=3844;SAP=8350.15;SAR=0;SRF=1259;SRP=2736.89;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1712:-153.401,-14.4494,0	0/1:30:15,15:15:540:15:536:-39.5439,0,-39.9056	0/1:91:42,49:42:1508:49:1745:-129.901,0,-108.621	0/1:73:43,30:43:1544:30:1080:-75.5243,0,-117.278	0/1:28:10,18:10:360:18:648:-50.223,0,-24.3155	0/1:31:14,17:14:500:17:612:-46.0815,0,-35.9904	1/1:67:0,67:0:0:67:2412:-217.279,-20.169,0	0/1:86:37,49:37:1328:49:1760:-132.771,0,-93.9255	0/1:86:39,47:39:1396:47:1673:-124.967,0,-100.051	1/1:43:1,42:1:36:42:1512:-132.754,-9.34602,0	0/1:19:7,12:7:252:12:432:-33.4854,0,-17.3094	1/1:98:0,98:0:0:98:3503:-315.458,-29.5009,0	0/1:92:51,41:51:1824:41:1468:-104.721,0,-136.746	1/1:33:0,33:0:0:33:1188:-107.224,-9.93399,0	1/1:70:0,70:0:0:70:2510:-225.947,-21.0721,0	1/1:48:0,48:0:0:48:1711:-154.133,-14.4494,0	0/1:17:11,6:11:387:6:216:-14.673,0,-30.0484	0/1:29:15,14:15:536:14:502:-36.7633,0,-39.8449	1/1:18:0,18:0:0:18:648:-58.6273,-5.41854,0	1/1:88:0,88:0:0:88:3155:-284.159,-26.4906,0	0/1:83:33,50:33:1188:50:1796:-136.914,0,-82.2431	1/1:63:0,63:0:0:63:2247:-202.481,-18.9649,0	0/1:61:25,36:25:900:36:1296:-98.5674,0,-62.9582	1/1:15:1,14:1:36:14:504:-42.0998,-0.917175,0	1/1:68:0,68:0:0:68:2432:-219.127,-20.47,0	0/1:137:73,62:73:2620:62:2232:-160.133,0,-195.048	0/1:160:77,83:77:2740:83:2968:-219.181,0,-198.679	0/1:21:8,13:8:288:13:468:-36.0075,0,-19.9458	0/1:109:59,50:59:2124:50:1784:-128.023,0,-158.616	1/1:68:6,61:6:216:61:2192:-177.752,-0.609172,0	1/1:59:0,59:0:0:59:2093:-188.624,-17.7608,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	.:.:.:.:.:.:.:.	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:154:0,154:0:0:154:5499:-495.012,-46.3586,0	1/1:76:0,76:0:0:76:2736:-246.455,-22.8783,0	0/1:39:21,18:21:752:18:632:-45.4662,0,-56.2376	.:.:.:.:.:.:.:.	0/1:75:31,44:31:1116:44:1576:-119.531,0,-78.1735	1/1:29:0,29:0:0:29:1040:-93.9005,-8.72987,0	1/1:133:0,133:0:0:133:4765:-428.775,-40.037,0	1/1:38:0,38:0:0:38:1360:-122.69,-11.4391,0	1/1:45:0,45:0:0:45:1607:-144.87,-13.5464,0	1/1:107:0,107:0:0:107:3848:-346.5,-32.2102,0	0/1:58:20,38:20:720:38:1346:-103.978,0,-47.669	1/1:82:0,82:0:0:82:2914:-262.454,-24.6845,0	0/1:64:37,27:37:1290:27:957:-67.1185,0,-96.7602	1/1:39:0,39:0:0:39:1363:-122.931,-11.7402,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:7:0,7:0:0:7:248:-22.6503,-2.10721,0	0/1:94:33,60:33:1188:60:2145:-164.927,0,-78.873	1/1:24:0,24:0:0:24:864:-78.0817,-7.22472,0	1/1:10:0,10:0:0:10:355:-32.1404,-3.0103,0	1/1:57:0,57:0:0:57:2052:-184.942,-17.1587,0	1/1:38:0,38:0:0:38:1364:-123.041,-11.4391,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:38:19,19:19:684:19:684:-50.4512,0,-50.4512	0/1:72:25,47:25:892:47:1679:-129.708,0,-58.9255	1/1:8:0,8:0:0:8:288:-26.2535,-2.40824,0	0/1:74:40,34:40:1440:34:1224:-88.189,0,-107.622	0/1:97:58,39:58:2076:39:1400:-97.0855,0,-157.911	0/1:39:19,20:19:669:20:720:-53.3886,0,-48.7938	0/1:27:8,18:8:288:18:633:-49.0643,0,-18.0808	1/1:85:0,85:0:0:85:3039:-273.427,-25.5876,0	1/1:61:0,61:0:0:61:2178:-196.283,-18.3628,0	0/1:20:9,11:9:316:11:392:-29.5995,0,-22.7583	1/1:31:0,31:0:0:31:1086:-98.0364,-9.33193,0	1/1:47:0,47:0:0:47:1688:-152.204,-14.1484,0	0/1:12:4,8:4:144:8:277:-21.6521,0,-9.70126	1/1:122:0,122:0:0:122:4342:-390.913,-36.7257,0	0/1:53:27,26:27:964:26:928:-67.8755,0,-71.1199	0/1:94:57,37:57:2037:37:1323:-91.0647,0,-154.813	1/1:56:0,56:0:0:56:1985:-178.909,-16.8577,0	0/1:70:36,34:36:1296:34:1224:-89.3786,0,-95.8718	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:47:23,24:23:824:24:860:-63.5688,0,-60.3349	0/1:52:27,25:27:972:25:885:-64.3127,0,-72.1443	1/1:95:0,95:0:0:95:3383:-304.156,-28.5979,0	0/1:62:21,41:21:741:41:1476:-114.444,0,-48.3477	0/1:52:23,29:23:824:29:1037:-77.9731,0,-58.8298	1/1:28:0,28:0:0:28:1000:-90.2594,-8.42884,0	1/1:108:0,108:0:0:108:3863:-347.772,-32.5112,0	0/1:30:11,19:11:396:19:680:-52.4983,0,-26.9518	0/1:60:35,24:35:1260:24:864:-59.9374,0,-95.5849	0/1:49:20,29:20:720:29:1036:-78.7953,0,-50.3783	0/1:20:10,10:10:356:10:351:-25.9008,0,-26.3606	0/1:72:31,41:31:1097:41:1468:-110.734,0,-77.3639	0/1:52:26,26:26:936:26:932:-68.5315,0,-68.9059	1/1:60:0,60:0:0:60:2133:-192.151,-18.0618,0	1/1:68:0,68:0:0:68:2428:-218.437,-20.47,0
chr11	31499558	.	C	A	78998.5	PASS	AB=0.516923;ABP=9.47795;AC=135;AF=0.733696;AN=184;AO=3804;CIGAR=1X;DP=5078;DPB=5078;DPRA=6.18926;EPP=8263.29;EPPR=2762.95;GTI=1;LEN=1;MEANALT=1.03297;MQM=59.5139;MQMR=59.9426;NS=92;NUMALT=1;ODDS=4.31312;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=135438;QR=44785;RO=1271;RPL=3804;RPP=8263.29;RPPR=2762.95;RPR=0;RUN=1;SAF=3804;SAP=8263.29;SAR=0;SRF=1271;SRP=2762.95;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1665:-149.16,-14.1484,0	0/1:30:16,14:16:572:14:500:-36.3053,0,-42.7825	0/1:90:42,48:42:1500:48:1695:-125.735,0,-108.202	0/1:73:44,29:44:1558:29:1036:-71.5512,0,-118.535	0/1:27:9,18:9:324:18:644:-50.1628,0,-21.378	0/1:29:13,16:13:460:16:572:-43.0836,0,-32.9917	1/1:65:0,65:0:0:65:2328:-209.723,-19.567,0	0/1:86:37,49:37:1296:49:1756:-132.411,0,-91.0487	0/1:87:41,46:41:1436:46:1652:-122.771,0,-103.343	1/1:41:0,41:0:0:41:1463:-131.942,-12.3422,0	0/1:21:7,14:7:252:14:500:-38.9846,0,-16.7073	1/1:99:0,99:0:0:99:3499:-315.113,-29.802,0	0/1:93:52,41:52:1818:41:1439:-101.809,0,-135.902	1/1:33:0,33:0:0:33:1159:-104.61,-9.93399,0	1/1:69:0,69:0:0:69:2459:-221.28,-20.7711,0	1/1:47:0,47:0:0:47:1665:-149.995,-14.1484,0	0/1:16:10,6:10:356:6:212:-14.6083,0,-27.5648	0/1:29:15,14:15:528:14:496:-36.2173,0,-39.1215	1/1:17:0,17:0:0:17:608:-55.0323,-5.11751,0	1/1:87:0,87:0:0:87:3124:-281.371,-26.1896,0	0/1:83:33,50:33:1154:50:1792:-136.549,0,-79.1793	1/1:62:0,62:0:0:62:2212:-199.333,-18.6639,0	0/1:63:27,36:27:951:36:1292:-97.6051,0,-66.9394	1/1:15:1,14:1:36:14:496:-41.376,-0.917175,0	1/1:68:0,68:0:0:68:2409:-217.057,-20.47,0	0/1:137:75,62:75:2653:62:2216:-158.457,0,-197.774	0/1:162:77,85:77:2702:85:3033:-224.404,0,-194.654	0/1:21:9,12:9:311:12:432:-32.769,0,-22.0021	0/1:109:59,49:59:2070:49:1756:-125.446,0,-153.697	1/1:68:6,62:6:212:62:2212:-179.727,-1.04524,0	1/1:59:0,59:0:0:59:2100:-189.248,-17.7608,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	.:.:.:.:.:.:.:.	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:158:0,157:0:0:157:5620:-505.519,-47.2617,0	1/1:76:0,76:0:0:76:2721:-245.105,-22.8783,0	0/1:40:21,19:21:743:19:680:-49.4871,0,-55.1237	.:.:.:.:.:.:.:.	0/1:73:31,42:31:1095:42:1470:-110.604,0,-76.8838	1/1:28:0,28:0:0:28:996:-89.9457,-8.42884,0	1/1:124:0,124:0:0:124:4413:-397.241,-37.3277,0	1/1:36:0,36:0:0:36:1284:-115.854,-10.8371,0	1/1:43:0,43:0:0:43:1527:-137.692,-12.9443,0	1/1:108:0,108:0:0:108:3840:-345.786,-32.5112,0	0/1:59:22,37:22:771:37:1308:-100.25,0,-51.9495	1/1:77:0,77:0:0:77:2737:-246.544,-23.1793,0	0/1:65:38,27:38:1327:27:972:-67.9993,0,-99.7885	1/1:39:0,39:0:0:39:1374:-123.743,-11.7402,0	1/1:42:0,42:0:0:42:1485:-133.943,-12.6433,0	1/1:7:0,7:0:0:7:252:-23.015,-2.10721,0	0/1:93:33,60:33:1171:60:2136:-164.488,0,-77.7009	1/1:24:0,24:0:0:24:856:-77.3598,-7.22472,0	1/1:10:0,10:0:0:10:360:-32.5888,-3.0103,0	1/1:54:0,54:0:0:54:1936:-174.507,-16.2556,0	1/1:38:0,38:0:0:38:1368:-123.387,-11.4391,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:38:19,19:19:667:19:684:-50.4512,0,-48.9155	0/1:74:26,48:26:932:48:1708:-131.716,0,-61.9226	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:73:40,33:40:1373:33:1172:-83.8105,0,-101.884	0/1:98:57,41:57:2018:41:1464:-102.522,0,-152.391	0/1:38:19,19:19:676:19:676:-49.7289,0,-49.7289	0/1:28:9,19:9:290:19:676:-52.5484,0,-17.9832	1/1:79:0,79:0:0:79:2797:-251.658,-23.7814,0	1/1:63:0,63:0:0:63:2248:-202.084,-18.9649,0	0/1:20:9,11:9:320:11:396:-29.9621,0,-23.1218	1/1:30:0,30:0:0:30:1072:-96.7787,-9.0309,0	1/1:45:0,45:0:0:45:1614:-145.548,-13.5464,0	0/1:13:5,8:5:176:8:288:-22.3458,0,-12.2716	1/1:122:0,122:0:0:122:4305:-387.428,-36.7257,0	0/1:58:28,30:28:1000:30:1042:-76.6061,0,-72.8533	0/1:92:55,37:55:1948:37:1320:-91.3888,0,-147.895	1/1:59:0,59:0:0:59:2111:-190.24,-17.7608,0	0/1:70:36,34:36:1283:34:1220:-89.0184,0,-94.7005	1/1:52:0,52:0:0:52:1868:-168.398,-15.6536,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:47:22,25:22:788:25:892:-66.4494,0,-57.0964	0/1:50:27,23:27:954:23:812:-58.3412,0,-71.1225	1/1:95:0,95:0:0:95:3373:-302.553,-28.5979,0	0/1:63:22,41:22:756:41:1468:-113.417,0,-49.3901	0/1:52:23,29:23:815:29:1032:-77.512,0,-58.0172	1/1:27:0,27:0:0:27:968:-87.3952,-8.12781,0	1/1:111:0,111:0:0:111:3955:-356.057,-33.4143,0	0/1:29:11,18:11:396:18:644:-49.5607,0,-27.2529	0/1:57:34,23:34:1189:23:816:-56.5785,0,-90.1542	0/1:48:20,28:20:712:28:995:-75.4064,0,-49.9572	0/1:20:10,10:10:343:10:336:-24.534,0,-25.18	0/1:72:31,41:31:1084:41:1446:-108.752,0,-76.192	0/1:52:29,23:29:1017:23:811:-57.6546,0,-76.1863	1/1:59:0,59:0:0:59:2100:-189.184,-17.7608,0	1/1:67:0,66:0:0:66:2336:-209.818,-19.868,0
chr11	31499869	.	A	G	117860	PASS	AB=0.495254;ABP=3.85546;AC=136;AF=0.731183;AN=186;AO=5703;CIGAR=1X;DP=7898;DPB=7898;DPRA=85.837;EPP=12187.9;EPPR=4657.05;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.9634;MQMR=59.9877;NS=93;NUMALT=1;ODDS=3.11036;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202091;QR=78506;RO=2191;RPL=5680;RPP=12187.9;RPPR=4657.05;RPR=23;RUN=1;SAF=5703;SAP=12386.9;SAR=0;SRF=2191;SRP=4760.71;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	0/1:41:23,18:23:824:18:632:-44.8645,0,-62.1411	0/1:346:164,182:164:5872:182:6462:-477.509,0,-424.434	0/1:163:88,75:88:3160:75:2610:-186.074,0,-235.556	0/1:38:22,16:22:788:16:568:-40.0127,0,-59.8057	0/1:37:20,17:20:720:17:607:-43.8235,0,-53.9907	1/1:81:0,81:0:0:81:2877:-259.166,-24.3834,0	0/1:107:65,42:65:2320:42:1492:-102.364,0,-176.85	0/1:81:36,45:36:1296:45:1599:-119.816,0,-92.5605	1/1:51:0,51:0:0:51:1792:-161.559,-15.3525,0	0/1:74:39,35:39:1404:35:1227:-88.456,0,-104.383	1/1:96:0,95:0:0:95:3309:-297.71,-28.5979,0	0/1:76:39,37:39:1392:37:1301:-94.5112,0,-102.701	1/1:75:0,75:0:0:75:2633:-237.218,-22.5773,0	1/1:61:0,61:0:0:61:2154:-194.127,-18.3628,0	1/1:70:0,70:0:0:70:2485:-223.902,-21.0721,0	0/1:36:14,22:14:504:22:777:-59.4133,0,-34.861	0/1:30:14,16:14:500:16:572:-42.7825,0,-36.3053	1/1:28:0,28:0:0:28:983:-88.7825,-8.42884,0	1/1:109:0,109:0:0:109:3870:-348.479,-32.8123,0	0/1:85:52,33:52:1864:33:1163:-79.3886,0,-142.45	1/1:94:0,94:0:0:94:3312:-298.299,-28.2968,0	0/1:111:62,49:62:2224:49:1726:-122.207,0,-167.01	1/1:76:3,73:3:108:73:2589:-223.183,-12.8031,0	1/1:95:0,95:0:0:95:3376:-303.199,-28.5979,0	0/1:182:90,92:90:3217:92:3271:-239.824,0,-234.963	0/1:261:116,145:116:4155:145:5142:-384.354,0,-295.563	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/1:226:106,120:106:3803:120:4273:-316.716,0,-274.405	1/1:119:3,116:3:108:116:4121:-361,-25.7474,0	1/1:84:2,82:2:72:82:2932:-257.278,-18.4498,0	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	.:.:.:.:.:.:.:.	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:141:0,140:0:0:140:4962:-446.411,-42.1442,0	1/1:156:0,156:0:0:156:5544:-499.056,-46.9607,0	0/1:40:13,27:13:464:27:937:-72.5997,0,-30.0563	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:98:51,47:51:1824:47:1680:-121.986,0,-134.94	1/1:40:0,40:0:0:40:1411:-127.287,-12.0412,0	1/1:147:0,147:0:0:147:5206:-468.677,-44.2514,0	1/1:47:0,47:0:0:47:1652:-148.965,-14.1484,0	1/1:50:0,50:0:0:50:1766:-159.22,-15.0515,0	1/1:102:0,102:0:0:102:3635:-327.356,-30.7051,0	0/1:101:67,34:67:2396:34:1212:-78.9823,0,-185.493	1/1:139:0,139:0:0:139:4936:-444.374,-41.8432,0	0/1:92:36,56:36:1292:56:1990:-151.65,0,-88.889	1/1:117:0,117:0:0:117:4147:-373.414,-35.2205,0	1/1:91:0,91:0:0:91:3252:-292.901,-27.3937,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:153:71,82:71:2548:82:2912:-216.257,0,-183.513	1/1:73:0,73:0:0:73:2563:-230.919,-21.9752,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:124:0,124:0:0:124:4380:-394.367,-37.3277,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:14:0,14:0:0:14:496:-44.9743,-4.21442,0	0/1:87:46,41:46:1652:41:1448:-104.424,0,-122.779	0/1:109:54,55:54:1944:55:1956:-143.503,0,-142.424	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:112:75,37:75:2692:37:1313:-84.7552,0,-208.798	0/1:124:65,59:65:2320:59:2106:-152.481,0,-171.733	0/1:66:19,47:19:684:47:1667:-130.449,0,-42.0223	0/1:102:48,54:48:1720:54:1923:-142.641,0,-124.38	1/1:162:0,162:0:0:162:5737:-516.451,-48.7669,0	1/1:127:1,126:1:36:126:4499:-401.463,-34.6325,0	0/1:44:14,30:14:500:30:1059:-82.3751,0,-32.0909	1/1:44:0,44:0:0:44:1554:-140.15,-13.2453,0	1/1:64:0,64:0:0:64:2259:-203.57,-19.2659,0	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	1/1:152:0,151:0:0:151:5353:-481.543,-45.4555,0	0/1:99:48,51:48:1728:51:1806:-133.018,0,-126.003	0/1:160:72,88:72:2588:88:3135:-234.212,0,-185.004	1/1:125:0,125:0:0:125:4443:-400.041,-37.6288,0	0/1:164:86,78:86:3079:78:2753:-198.643,0,-227.969	1/1:79:1,78:1:36:78:2744:-243.602,-20.1831,0	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/1:84:40,44:40:1436:44:1572:-116.485,0,-104.251	0/1:181:92,89:92:3300:89:3122:-226.72,0,-242.732	1/1:102:0,102:0:0:102:3613:-325.373,-30.7051,0	0/1:46:22,24:22:792:24:856:-63.5137,0,-57.7583	0/1:64:38,26:38:1368:26:923:-64.1208,0,-104.155	1/1:41:0,41:0:0:41:1454:-131.154,-12.3422,0	1/1:104:1,103:1:36:103:3655:-325.558,-27.7088,0	0/1:24:8,16:8:288:16:564:-43.8656,0,-19.0427	0/1:73:43,30:43:1536:30:1057:-73.4638,0,-116.557	0/1:49:27,22:27:972:22:788:-56.4943,0,-73.0474	0/1:72:32,40:32:1144:40:1418:-106.242,0,-81.5954	0/1:152:87,64:87:3083:64:2250:-156.948,0,-231.885	0/1:62:39,23:39:1385:23:824:-55.8195,0,-106.283	1/1:126:0,126:0:0:126:4456:-401.211,-37.9298,0	1/1:56:0,56:0:0:56:1992:-179.554,-16.8577,0
chr11	31540350	.	CA	AA,AG	152292	PASS	AB=0.501384,0.497508;ABP=3.07042,3.20508;AC=136,48;AF=0.73913,0.26087;AN=184;AO=5360,1817;CIGAR=1X1M,2X;DP=7184;DPB=7184;DPRA=26.304,1.03216;EPP=11642.1,3948.58;EPPR=0;GTI=2;LEN=1,2;MEANALT=1.64835,2.07547;MQM=49.858,52.9835;MQMR=0;NS=92;NUMALT=2;ODDS=3.75294;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=191595,64413;QR=0;RO=0;RPL=0,0;RPP=11642.1,3948.58;RPPR=0;RPR=5360,1817;RUN=1,1;SAF=5360,1817;SAP=11642.1,3948.58;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52,0:0:0:52,0:1867,0:-168.133,-15.6536,0,-168.133,-15.6536,-168.133	1/2:60:0,38,22:0:0:38,22:1367,790:-175.937,-64.6907,-53.2516,-111.605,0,-104.982	1/2:103:0,47,56:0:0:47,56:1654,1981:-295.478,-161.099,-146.951,-134.731,0,-117.873	1/2:179:0,58,121:0:0:58,121:2081,4310:-516.981,-349.483,-332.023,-167.853,0,-131.428	1/2:24:0,14,10:0:0:14,10:499,360:-69.921,-29.6876,-25.4732,-40.59,0,-37.5797	1/2:33:0,11,22:0:0:11,22:396,782:-96.1717,-63.9506,-60.6393,-32.5785,0,-25.9559	1/1:90:0,90,0:0:0:90,0:3212,0:-286.652,-27.0927,0,-286.652,-27.0927,-286.652	1/2:89:0,47,42:0:0:47,42:1677,1482:-257.011,-120.416,-106.267,-136.949,0,-124.306	1/2:98:0,59,39:0:0:59,39:2120,1391:-286.2,-113.408,-95.6471,-173.149,0,-161.409	1/1:66:0,66,0:0:0:66,0:2347,0:-208.495,-19.868,0,-208.495,-19.868,-208.495	1/2:33:0,20,13:0:0:20,13:719,456:-94.4686,-36.7027,-30.6821,-58.114,0,-54.2006	1/1:94:0,93,1:0:0:93,1:3340,36:-300.175,-27.9958,0,-297.324,-24.7941,-297.023	1/2:88:0,39,49:0:0:39,49:1400,1741:-255.824,-141.637,-129.897,-114.544,0,-99.7931	1/1:61:0,61,0:0:0:61,0:2185,0:-195.022,-18.3628,0,-195.022,-18.3628,-195.022	1/1:81:0,81,0:0:0:81,0:2910,0:-259.573,-24.3834,0,-259.573,-24.3834,-259.573	1/1:63:0,63,0:0:0:63,0:2260,0:-202.533,-18.9649,0,-202.533,-18.9649,-202.533	1/2:28:0,13,15:0:0:13,15:468,538:-82.1315,-43.9487,-40.0353,-38.541,0,-34.0255	1/2:41:0,15,26:0:0:15,26:540,910:-117.18,-73.132,-68.6166,-44.4016,0,-36.5748	1/1:35:0,35,0:0:0:35,0:1256,0:-112.874,-10.5361,0,-112.874,-10.5361,-112.874	1/1:144:0,143,0:0:0:143,0:5114,0:-456.736,-43.0473,0,-456.736,-43.0473,-456.736	1/2:133:0,73,60:0:0:73,60:2622,2092:-380.651,-168.539,-146.563,-212.462,0,-194.401	1/1:74:0,74,0:0:0:74,0:2652,0:-236.096,-22.2762,0,-236.096,-22.2762,-236.096	1/2:98:0,52,46:0:0:52,46:1857,1603:-278.075,-128.705,-113.052,-149.717,0,-135.869	1/2:94:0,85,9:0:0:85,9:3018,322:-270.474,-26.5687,-0.981162,-244.262,0,-241.553	1/1:64:0,63,1:0:0:63,1:2248,32:-200.489,-18.9649,0,-197.913,-16.0686,-197.612	1/2:171:0,84,87:0:0:84,87:2993,3092:-492.868,-251.716,-226.429,-241.506,0,-215.317	1/2:210:0,109,101:0:0:109,101:3920,3582:-609.071,-291.169,-258.357,-318.258,0,-287.854	1/2:42:0,15,26:0:0:15,26:536,936:-119.207,-75.7114,-71.196,-43.5707,0,-35.7439	1/2:213:0,122,91:0:0:122,91:4362,3234:-613.626,-261.971,-225.245,-352.009,0,-324.615	1/1:77:0,72,5:0:0:72,5:2553,180:-227.23,-21.6742,0,-213.272,-7.37246,-211.767	1/1:94:0,93,1:0:0:93,1:3316,36:-295.308,-27.9958,0,-292.375,-24.7036,-292.074	1/2:5:0,1,4:0:0:1,4:36,133:-14.004,-11.0789,-10.7779,-3.27774,0,-2.07362	1/2:18:0,7,11:0:0:7,11:233,392:-51.0452,-32.2613,-30.1541,-19.125,0,-15.8136	1/1:4:0,4,0:0:0:4,0:144,0:-13.2894,-1.20412,0,-13.2894,-1.20412,-13.2894	2/2:3:0,0,3:0:0:0,3:0,108:-10.0609,-10.0609,-10.0609,-0.90309,-0.90309,0	1/1:7:0,7,0:0:0:7,0:252,0:-23.0261,-2.10721,0,-23.0261,-2.10721,-23.0261	1/1:163:0,163,0:0:0:163,0:5834,0:-518.702,-49.0679,0,-518.702,-49.0679,-518.702	1/1:108:0,108,0:0:0:108,0:3847,0:-344.256,-32.5112,0,-344.256,-32.5112,-344.256	1/2:31:0,14,17:0:0:14,17:500,599:-88.9892,-48.2328,-44.0184,-41.1085,0,-35.991	1/1:1:0,1,0:0:0:1,0:36,0:-3.57877,-0.30103,0,-3.57877,-0.30103,-3.57877	1/2:121:0,72,49:0:0:72,49:2588,1721:-350.022,-140.158,-118.484,-210.217,0,-195.467	1/1:20:0,20,0:0:0:20,0:720,0:-64.7929,-6.0206,0,-64.7929,-6.0206,-64.7929	1/1:117:0,115,2:0:0:115,2:4130,72:-368.841,-34.6185,0,-363.601,-29.0528,-362.999	1/1:44:0,44,0:0:0:44,0:1584,0:-141.66,-13.2453,0,-141.66,-13.2453,-141.66	1/1:45:0,45,0:0:0:45,0:1615,0:-144.085,-13.5464,0,-144.085,-13.5464,-144.085	1/1:118:0,118,0:0:0:118,0:4228,0:-376.735,-35.5215,0,-376.735,-35.5215,-376.735	1/2:89:0,44,45:0:0:44,45:1576,1589:-257.867,-129.526,-116.281,-128.695,0,-115.149	1/1:107:0,107,0:0:0:107,0:3831,0:-342.206,-32.2102,0,-342.206,-32.2102,-342.206	1/2:100:0,46,54:0:0:46,54:1652,1929:-290.599,-156.865,-143.018,-134.09,0,-117.835	1/1:70:0,70,0:0:0:70,0:2496,0:-222.994,-21.0721,0,-222.994,-21.0721,-222.994	1/1:124:0,124,0:0:0:124,0:4420,0:-392.501,-37.3277,0,-392.501,-37.3277,-392.501	1/1:6:0,6,0:0:0:6,0:216,0:-19.6539,-1.80618,0,-19.6539,-1.80618,-19.6539	1/2:111:0,52,59:0:0:52,59:1849,2081:-319.804,-169.143,-153.49,-151.014,0,-133.254	1/1:48:0,48,0:0:0:48,0:1697,0:-151.063,-14.4494,0,-151.063,-14.4494,-151.063	1/1:3:0,3,0:0:0:3,0:108,0:-10.0739,-0.90309,0,-10.0739,-0.90309,-10.0739	1/1:110:0,110,0:0:0:110,0:3917,0:-349.894,-33.1133,0,-349.894,-33.1133,-349.894	1/1:49:0,49,0:0:0:49,0:1740,0:-155.344,-14.7505,0,-155.344,-14.7505,-155.344	.:.:.:.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chr11	31540356	.	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chr11	31540453	.	C	A	169650	PASS	AB=0.498162;ABP=3.16195;AC=139;AF=0.739362;AN=188;AO=7962;CIGAR=1X;DP=10575;DPB=10575;DPRA=0;EPP=17015.4;EPPR=5415.14;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.9514;MQMR=60;NS=94;NUMALT=1;ODDS=3.4019;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284821;QR=93361;RO=2611;RPL=7930;RPP=17015.4;RPPR=5415.14;RPR=32;RUN=1;SAF=0;SAP=17292.3;SAR=7962;SRF=0;SRP=5672.72;SRR=2611;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:185:95,90:95:3408:90:3215:-233.881,0,-251.243	0/1:101:53,48:53:1896:48:1716:-124.322,0,-140.514	0/1:408:189,219:189:6771:219:7802:-579.36,0,-486.641	0/1:46:27,19:27:968:19:684:-48.0429,0,-73.59	0/1:22:10,12:10:356:12:426:-32.0545,0,-25.7586	1/1:144:1,143:1:36:143:5096:-455.185,-39.75,0	0/1:214:130,84:130:4630:84:3016:-207.25,0,-352.444	0/1:76:39,37:39:1395:37:1328:-96.944,0,-102.97	1/1:164:0,164:0:0:164:5849:-526.514,-49.3689,0	0/1:24:17,7:17:604:7:252:-15.8042,0,-47.4659	1/1:57:0,57:0:0:57:2029:-182.881,-17.1587,0	0/1:51:21,30:21:748:30:1072:-81.4399,0,-52.2928	1/1:68:0,68:0:0:68:2423:-218.326,-20.47,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:62:35,27:35:1260:27:964:-68.413,0,-95.0416	0/1:62:27,35:27:972:35:1260:-95.0416,0,-69.134	1/1:38:0,38:0:0:38:1359:-122.61,-11.4391,0	1/1:251:0,251:0:0:251:9000:-809.969,-75.5585,0	0/1:185:85,100:85:3048:100:3550:-264.016,0,-218.859	1/1:150:0,150:0:0:150:5384:-484.69,-45.1545,0	0/1:78:48,30:48:1720:30:1076:-73.6725,0,-131.605	0/1:161:23,138:23:812:138:4943:-396.421,0,-24.9351	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:417:190,227:190:6809:227:8098:-603.294,0,-487.349	0/1:215:128,87:128:4575:87:3128:-217.023,0,-347.194	0/1:27:9,18:9:324:18:634:-49.1702,0,-21.378	0/1:274:142,131:142:5088:131:4670:-337.921,0,-375.522	1/1:206:7,199:7:237:199:7085:-616.051,-40.3531,0	1/1:189:2,187:2:68:187:6658:-592.836,-50.437,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:165:0,165:0:0:165:5919:-532.817,-49.67,0	1/1:185:1,184:1:36:184:6604:-590.839,-52.0923,0	0/1:42:19,23:19:676:23:828:-62.2009,0,-48.5247	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:234:124,110:124:4456:110:3937:-284.079,0,-330.768	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:195:3,192:3:108:192:6873:-608.562,-48.6257,0	1/1:63:0,63:0:0:63:2257:-203.387,-18.9649,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	1/1:76:0,76:0:0:76:2709:-243.879,-22.8783,0	0/1:137:69,68:69:2476:68:2408:-175.735,0,-181.852	1/1:236:0,236:0:0:236:8427:-758.434,-71.0431,0	0/1:143:68,75:68:2428:75:2674:-197.858,0,-175.729	1/1:162:1,161:1:36:161:5792:-517.792,-45.1686,0	1/1:204:0,204:0:0:204:7290:-656.147,-61.4101,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:112:53,59:53:1900:59:2120:-157.353,0,-137.563	1/1:50:0,50:0:0:50:1800:-162.176,-15.0515,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:175:0,175:0:0:175:6270:-564.383,-52.6803,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:67:36,31:36:1296:31:1108:-79.862,0,-96.7749	0/1:89:46,43:46:1644:43:1531:-111.291,0,-121.457	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:424:0,424:0:0:424:15170:-1365.01,-127.637,0	0/1:334:186,147:186:6653:147:5236:-370.776,0,-498.244	0/1:96:54,42:54:1919:42:1508:-107.116,0,-144.088	0/1:85:40,45:40:1436:45:1616:-120.142,0,-103.95	1/1:264:2,262:2:72:262:9377:-837.05,-72.6352,0	1/1:71:0,71:0:0:71:2548:-229.553,-21.3731,0	0/1:10:4,6:4:136:6:216:-16.7802,0,-9.56524	1/1:68:0,68:0:0:68:2444:-220.215,-20.47,0	1/1:73:0,73:0:0:73:2609:-234.866,-21.9752,0	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	1/1:113:0,113:0:0:113:4031:-362.979,-34.0164,0	0/1:102:58,44:58:2034:44:1571:-110.976,0,-152.624	0/1:197:94,103:94:3341:103:3684:-272.459,0,-241.604	1/1:281:0,281:0:0:281:10057:-905.062,-84.5894,0	0/1:72:39,33:39:1377:33:1184:-85.1942,0,-102.553	1/1:163:0,163:0:0:163:5868:-528.227,-49.0679,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:163:89,74:89:3200:74:2638:-188.599,0,-239.154	0/1:145:71,74:71:2516:74:2647:-194.826,0,-183.041	1/1:242:0,242:0:0:242:8619:-775.691,-72.8493,0	0/1:110:51,59:51:1828:59:2120:-157.949,0,-131.688	0/1:73:44,29:44:1584:29:1036:-71.5787,0,-120.876	1/1:96:0,96:0:0:96:3456:-311.251,-28.8989,0	1/1:129:1,128:1:36:128:4586:-409.298,-35.2346,0	0/1:42:14,28:14:504:28:1008:-78.3931,0,-33.0548	0/1:60:25,35:25:900:35:1252:-94.9227,0,-63.2592	0/1:57:34,23:34:1212:23:828:-57.6854,0,-92.2276	0/1:19:7,12:7:252:12:428:-33.1392,0,-17.3094	0/1:55:31,24:31:1096:24:860:-61.1652,0,-82.3933	0/1:59:35,24:35:1260:24:864:-60.3218,0,-95.9447	1/1:238:1,237:1:36:237:8490:-760.499,-68.0469,0	1/1:87:0,87:0:0:87:3098:-279.047,-26.1896,0
chr11	31572549	.	G	A	56610.9	PASS	AB=0.498531;ABP=3.14429;AC=47;AF=0.252688;AN=186;AO=3594;CIGAR=1X;DP=14739;DPB=14739;DPRA=0.980936;EPP=7720.66;EPPR=23957.1;GTI=1;LEN=1;MEANALT=1.08929;MQM=59.8954;MQMR=59.9656;NS=93;NUMALT=1;ODDS=2.35967;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123644;QR=394688;RO=11139;RPL=3584;RPP=7720.66;RPPR=23957.1;RPR=10;RUN=1;SAF=0;SAP=7807.28;SAR=3594;SRF=0;SRP=24191;SRR=11139;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:161:161,0:161:5684:0:0:0,-48.4658,-511.686	0/1:95:55,40:55:1928:40:1391:-96.8884,0,-145.197	0/1:244:124,120:124:4411:120:4130:-298.443,0,-323.713	0/1:380:202,177:202:7103:177:6021:-427.471,0,-524.893	0/1:181:90,91:90:3181:91:3100:-224.749,0,-232.029	0/1:61:29,32:29:1028:32:1095:-80.4921,0,-74.4702	0/0:144:144,0:144:5046:0:0:0,-43.3483,-454.295	0/1:316:150,166:150:5308:166:5735:-421.133,0,-382.734	0/1:215:95,119:95:3337:119:4040:-299.151,0,-235.909	0/0:122:122,0:122:4310:0:0:0,-36.7257,-388.078	0/1:21:9,12:9:324:12:424:-32.174,0,-23.1842	0/0:85:85,0:85:3001:0:0:0,-25.5875,-270.323	0/1:64:38,26:38:1360:26:887:-60.8753,0,-103.435	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/0:80:80,0:80:2831:0:0:0,-24.0824,-254.985	0/0:40:40,0:40:1420:0:0:0,-12.0412,-128.097	0/1:43:29,14:29:1036:14:488:-31.3061,0,-80.6096	0/1:33:14,19:14:500:19:656:-49.4263,0,-35.4022	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:436:436,0:436:15403:0:0:0,-131.249,-1385.96	0/1:274:129,145:129:4554:145:4994:-367.146,0,-327.55	0/0:463:463,0:463:16428:0:0:0,-139.377,-1478.21	0/1:230:121,109:121:4303:109:3761:-269.419,0,-318.212	0/0:137:130,7:130:4557:7:244:0,-18.9417,-388.003	0/0:115:115,0:115:4075:0:0:0,-34.6184,-366.94	0/1:645:325,319:325:11498:319:10945:-790.61,0,-840.404	0/1:406:189,217:189:6665:217:7422:-545.841,0,-477.718	0/1:34:8,26:8:284:26:873:-68.6387,0,-15.6683	0/1:606:309,297:309:10919:297:10042:-721.341,0,-800.2	0/0:208:198,10:198:7037:10:335:0,-32.1398,-602.922	0/0:193:191,2:191:6715:2:72:0,-51.2621,-597.586	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:10:7,3:7:244:3:100:-6.32014,0,-19.2891	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:169:169,0:169:6012:0:0:0,-50.8741,-541.189	0/0:289:289,0:289:10301:0:0:0,-86.9977,-926.962	0/1:25:14,11:14:492:11:381:-27.0958,0,-37.0866	.:.:.:.:.:.:.:.	0/1:211:115,96:115:4061:96:3289:-232.72,0,-302.163	0/0:14:13,1:13:468:1:36:0,-0.616145,-38.8614	0/0:420:420,0:420:14917:0:0:0,-126.433,-1342.23	0/0:55:55,0:55:1960:0:0:0,-16.5566,-176.675	0/0:59:59,0:59:2111:0:0:0,-17.7608,-190.258	0/0:225:225,0:225:8000:0:0:0,-67.7317,-720.021	0/1:285:131,154:131:4652:154:5360:-396.75,0,-333.053	0/0:548:547,0:547:19392:0:0:0,-164.663,-1744.15	0/1:179:93,86:93:3292:86:2979:-214.462,0,-242.618	0/0:176:176,0:176:6288:0:0:0,-52.9813,-565.996	0/0:192:192,0:192:6800:0:0:0,-57.7978,-612.082	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/1:189:93,96:93:3283:96:3340:-243.916,0,-238.781	0/0:121:121,0:121:4270:0:0:0,-36.4246,-384.483	0/0:17:17,0:17:591:0:0:0,-5.11751,-53.5153	0/0:128:128,0:128:4513:0:0:0,-38.5318,-406.344	0/0:129:129,0:129:4565:0:0:0,-38.8329,-410.995	0/1:9:4,5:4:140:5:172:-13.1087,0,-10.2353	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/1:110:59,51:59:2078:51:1766:-126.109,0,-154.176	0/1:77:42,35:42:1500:35:1213:-86.2916,0,-112.115	0/0:7:7,0:7:235:0:0:0,-2.10721,-21.4779	0/0:436:436,0:436:15517:0:0:0,-131.249,-1395.7	0/1:356:158,198:158:5640:198:6841:-508.592,0,-400.556	0/1:85:55,30:55:1930:30:1028:-67.2406,0,-148.388	0/1:193:103,90:103:3645:90:3104:-221.477,0,-270.157	0/0:351:349,2:349:12339:2:72:0,-98.8248,-1103.42	0/0:226:222,4:222:7885:4:144:0,-54.7192,-696.361	0/1:14:8,6:8:288:6:212:-15.2104,0,-22.053	0/0:130:130,0:130:4607:0:0:0,-39.1339,-414.799	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/1:17:4,13:4:144:13:455:-36.1644,0,-8.19611	0/0:242:242,0:242:8518:0:0:0,-72.8493,-766.21	0/1:167:93,74:93:3283:74:2556:-180.022,0,-245.421	0/1:173:92,81:92:3253:81:2804:-200.528,0,-240.913	0/0:331:331,0:331:11755:0:0:0,-99.6409,-1057.78	0/1:276:116,160:116:4151:160:5595:-420.176,0,-290.688	0/0:108:106,2:106:3775:2:64:0,-26.4325,-333.872	0/1:17:9,7:9:320:7:244:-17.1245,0,-23.9665	0/1:186:111,75:111:3936:75:2573:-175.833,0,-298.442	0/1:280:146,133:146:5197:133:4652:-334.433,0,-383.523	0/0:337:337,0:337:11922:0:0:0,-101.447,-1072.36	0/1:65:33,32:33:1184:32:1119:-81.4499,0,-87.301	0/1:59:31,28:31:1104:28:965:-69.3983,0,-81.9099	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/0:123:121,2:121:4295:2:57:0,-31.6134,-381.317	0/1:25:12,13:12:428:13:456:-33.8475,0,-31.3331	0/1:78:29,49:29:1032:49:1667:-126.8,0,-69.7131	0/1:73:38,35:38:1332:35:1208:-87.0476,0,-98.2018	0/1:14:8,6:8:284:6:204:-14.4789,0,-21.6889	0/1:47:27,20:27:964:20:681:-47.458,0,-72.9284	0/1:69:27,42:27:964:42:1436:-108.76,0,-66.3058	0/0:300:299,1:299:10640:1:36:0,-86.7112,-953.919	0/0:85:85,0:85:3011:0:0:0,-25.5875,-271.223
chr11	31574443	.	T	C	43038.2	PASS	AB=0.511116;ABP=8.32049;AC=48;AF=0.255319;AN=188;AO=2536;CIGAR=1X;DP=9359;DPB=9359;DPRA=1.11969;EPP=5509.86;EPPR=14819;GTI=2;LEN=1;MEANALT=1;MQM=59.8785;MQMR=59.9875;NS=94;NUMALT=1;ODDS=1.11918;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90601;QR=244423;RO=6823;RPL=2536;RPP=5509.86;RPPR=14819;RPR=0;RUN=1;SAF=0;SAP=5509.86;SAR=2536;SRF=0;SRP=14819;SRR=6823;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:195:86,109:86:3073:109:3912:-293.571,0,-218.096	0/1:202:101,101:101:3613:101:3581:-261.685,0,-264.566	0/1:174:103,71:103:3681:71:2544:-176.831,0,-279.112	0/1:81:38,43:38:1349:43:1524:-113.066,0,-97.3248	0/1:46:24,22:24:864:22:792:-57.7583,0,-64.2352	0/0:180:180,0:180:6403:0:0:0,-54.1854,-576.358	0/1:160:66,94:66:2376:94:3361:-254.507,0,-165.933	0/1:98:44,54:44:1576:54:1916:-143.171,0,-112.631	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.869	0/1:44:21,23:21:756:23:828:-61.5906,0,-55.1219	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:72:33,39:33:1188:39:1388:-103.537,0,-85.5463	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:49:22,27:22:788:27:968:-72.6869,0,-56.4943	0/1:60:24,36:24:864:36:1287:-98.071,0,-60.0208	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:297:297,0:297:10672:0:0:0,-89.4059,-960.297	0/1:157:77,80:77:2756:80:2830:-207.675,0,-201.02	0/0:111:111,0:111:3961:0:0:0,-33.4143,-356.681	0/1:98:53,45:53:1881:45:1612:-115.869,0,-140.066	0/1:128:115,13:115:4124:13:468:-3.92781,0,-332.812	0/0:87:87,0:87:3113:0:0:0,-26.1896,-280.395	0/1:239:113,126:113:4029:126:4500:-333.224,0,-290.852	0/1:248:120,128:120:4312:128:4583:-337.44,0,-313.599	0/1:34:18,16:18:648:16:576:-41.94,0,-48.4169	0/1:358:181,177:181:6496:177:6333:-462.291,0,-476.954	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:139:139,0:139:4985:0:0:0,-41.8432,-448.795	0/0:154:153,1:153:5481:1:36:0,-42.7603,-489.817	0/1:52:23,29:23:824:29:1032:-77.5399,0,-58.8298	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:263:138,125:138:4945:125:4484:-324.414,0,-366.026	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.8304	0/0:171:171,0:171:6098:0:0:0,-51.4761,-548.92	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:161:85,76:85:3052:76:2724:-196.937,0,-226.443	0/0:108:108,0:108:3856:0:0:0,-32.5112,-347.237	0/1:135:61,74:61:2184:74:2644:-197.567,0,-156.187	0/0:111:111,0:111:3984:0:0:0,-33.4143,-358.747	0/0:143:143,0:143:5121:0:0:0,-43.0473,-461.03	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:242:123,119:123:4405:119:4268:-311.255,0,-323.771	0/0:46:45,1:45:1601:1:36:0,-10.2491,-140.78	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:177:177,0:177:6352:0:0:0,-53.2823,-571.769	0/0:54:54,0:54:1910:0:0:0,-16.2556,-172.174	0/1:5:3,2:3:108:2:71:-5.23691,0,-8.57002	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:82:38,44:38:1364:44:1550:-115.095,0,-98.3747	0/1:76:32,44:32:1152:44:1576:-119.253,0,-81.1119	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:250:250,0:250:8984:0:0:0,-75.2575,-808.535	0/1:234:111,123:111:3964:123:4390:-324.826,0,-286.511	0/1:43:8,35:8:288:35:1256:-100.401,0,-13.3231	0/1:96:43,53:43:1548:53:1894:-141.836,0,-110.714	0/0:154:154,0:154:5513:0:0:0,-46.3586,-496.294	0/0:121:117,4:117:4158:4:144:0,-23.111,-361.089	0/1:29:7,22:7:252:22:788:-62.5149,0,-14.2991	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.935	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:116:116,0:116:4131:0:0:0,-34.9195,-371.97	0/1:60:25,35:25:900:35:1240:-93.8427,0,-63.2592	0/1:151:77,74:77:2768:74:2652:-193.47,0,-203.905	0/0:228:228,0:228:8188:0:0:0,-68.6348,-736.93	0/1:97:53,44:53:1900:44:1576:-112.932,0,-142.078	0/0:168:167,1:167:5977:1:36:0,-46.9748,-534.436	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:154:67,87:67:2400:87:3101:-232.916,0,-169.898	0/1:147:76,71:76:2732:71:2511:-181.982,0,-201.87	0/0:253:253,0:253:9084:0:0:0,-76.1606,-817.532	0/1:78:38,40:38:1368:40:1440:-106.417,0,-99.9405	0/1:56:23,33:23:828:33:1175:-89.1709,0,-57.9864	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.389	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/1:57:29,28:29:1044:28:1008:-73.8776,0,-77.1161	0/1:60:34,26:34:1209:26:927:-65.6774,0,-91.0523	0/1:36:18,18:18:644:18:640:-47.0922,0,-47.4535	0/1:57:25,32:25:896:32:1144:-86.1108,0,-63.8016	0/1:68:18,50:18:644:50:1779:-139.905,0,-37.8206	0/0:201:201,0:201:7164:0:0:0,-60.507,-644.811	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082
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chr11	31580630	.	T	G	122081	PASS	AB=0.51076;ABP=6.88877;AC=139;AF=0.747312;AN=186;AO=5827;CIGAR=1X;DP=7743;DPB=7743;DPRA=21.0299;EPP=12656.2;EPPR=4133.16;GTI=1;LEN=1;MEANALT=1.08696;MQM=59.9707;MQMR=59.9586;NS=93;NUMALT=1;ODDS=4.49891;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208090;QR=68238;RO=1906;RPL=0;RPP=12656.2;RPPR=4133.16;RPR=5827;RUN=1;SAF=5827;SAP=12656.2;SAR=0;SRF=1906;SRP=4141.84;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:968:-87.4292,-8.12781,0	0/1:133:69,64:69:2480:64:2273:-164.792,0,-183.416	0/1:41:20,21:20:716:21:744:-54.9421,0,-52.4255	0/1:188:99,89:99:3564:89:3166:-228.569,0,-264.344	0/1:29:17,12:17:612:12:432:-30.4913,0,-46.6836	0/1:68:28,40:28:1000:40:1413:-106.995,0,-69.8453	1/1:115:0,115:0:0:115:4094:-368.06,-34.6185,0	0/1:150:78,71:78:2788:71:2544:-183.997,0,-205.948	0/1:79:48,31:48:1705:31:1096:-75.1686,0,-129.929	1/1:146:0,146:0:0:146:5166:-465.062,-43.9504,0	0/1:69:37,32:37:1332:32:1137:-81.8483,0,-99.4113	1/1:58:0,58:0:0:58:2076:-187.111,-17.4597,0	0/1:73:40,33:40:1417:33:1169:-83.5401,0,-105.85	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:65:0,65:0:0:65:2305:-207.709,-19.567,0	1/1:39:1,38:1:36:38:1356:-118.74,-8.1419,0	0/1:79:39,40:39:1395:40:1425:-104.765,0,-102.067	0/1:86:41,45:41:1472:45:1616:-119.841,0,-106.888	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:136:0,134:0:0:134:4816:-433.233,-40.338,0	0/1:139:60,79:60:2148:79:2830:-213.095,0,-151.744	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:105:44,61:44:1565:61:2176:-164.498,0,-109.531	1/1:111:9,102:9:320:102:3641:-298.751,-4.27197,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:295:128,166:128:4576:166:5937:-445.546,0,-323.143	0/1:152:66,86:66:2351:86:3061:-229.959,0,-165.985	0/1:42:18,24:18:648:24:841:-63.3631,0,-46.0086	0/1:249:119,130:119:4276:130:4672:-345.683,0,-310.06	1/1:148:4,143:4:144:143:5107:-446.46,-31.2976,0	1/1:128:1,127:1:36:127:4529:-404.179,-34.9336,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:183:0,183:0:0:183:6538:-588.501,-55.0885,0	1/1:157:0,157:0:0:157:5612:-505.168,-47.2617,0	0/1:43:23,20:23:820:20:716:-51.8234,0,-61.1782	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:137:78,59:78:2791:59:2084:-146.586,0,-210.189	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:84:0,84:0:0:84:2982:-268.61,-25.2865,0	1/1:99:0,99:0:0:99:3556:-320.247,-29.802,0	1/1:71:1,70:1:36:70:2481:-219.945,-17.7749,0	1/1:56:0,56:0:0:56:1986:-179.01,-16.8577,0	0/1:92:43,49:43:1540:49:1751:-130.179,0,-111.198	1/1:140:0,140:0:0:140:5003:-450.416,-42.1442,0	0/1:106:58,48:58:2059:48:1720:-123.176,0,-153.672	1/1:132:0,132:0:0:132:4740:-426.757,-39.736,0	1/1:102:0,101:0:0:101:3624:-326.005,-30.404,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:56:32,24:32:1148:24:856:-60.5034,0,-86.7722	1/1:49:0,49:0:0:49:1745:-157.33,-14.7505,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:66:0,66:0:0:66:2361:-212.742,-19.868,0	1/1:41:0,41:0:0:41:1445:-130.344,-12.3422,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:90:52,38:52:1848:38:1364:-95.968,0,-139.505	0/1:96:53,43:53:1908:43:1544:-110.354,0,-143.099	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:263:0,263:0:0:263:9432:-848.839,-79.1709,0	0/1:99:45,52:45:1612:52:1864:-138.48,0,-115.81	0/1:54:32,22:32:1152:22:792:-55.3501,0,-87.7345	0/1:27:17,10:17:608:10:360:-24.6165,0,-46.9242	1/1:107:0,107:0:0:107:3810:-343.095,-32.2102,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	1/1:77:0,77:0:0:77:2764:-249.001,-23.1793,0	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:80:44,36:44:1580:36:1288:-92.1412,0,-118.409	0/1:165:60,105:60:2148:105:3741:-287.222,0,-143.918	1/1:180:0,179:0:0:179:6365:-572.582,-53.8844,0	0/1:58:21,37:21:756:37:1297:-99.5694,0,-50.9075	1/1:128:3,125:3:108:125:4477:-393.022,-28.4567,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:93:39,54:39:1396:54:1936:-146.521,0,-97.9433	0/1:126:53,73:53:1908:73:2628:-198.837,0,-134.068	1/1:130:0,130:0:0:130:4584:-412.724,-39.1339,0	0/1:111:62,49:62:2220:49:1752:-124.55,0,-166.65	0/1:57:20,37:20:720:37:1328:-102.664,0,-47.9524	1/1:102:0,102:0:0:102:3637:-327.534,-30.7051,0	1/1:172:0,172:0:0:172:6165:-554.946,-51.7772,0	0/1:40:17,23:17:612:23:820:-62.0813,0,-43.3722	0/1:82:35,47:35:1252:47:1688:-127.522,0,-88.3006	0/1:71:36,35:36:1283:35:1260:-92.3324,0,-94.3995	0/1:26:9,17:9:320:17:612:-47.5867,0,-21.3156	0/1:70:33,37:33:1188:37:1309:-97.0374,0,-86.1565	0/1:57:43,13:43:1528:13:468:-25.2792,0,-120.635	1/1:139:1,138:1:36:138:4930:-440.252,-38.2449,0	1/1:93:0,93:0:0:93:3308:-297.938,-27.9958,0
chr11	31580643	.	C	G	122695	PASS	AB=0.509576;ABP=6.08768;AC=141;AF=0.75;AN=188;AO=5842;CIGAR=1X;DP=7766;DPB=7766;DPRA=20.8656;EPP=12671.4;EPPR=4085.75;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9846;MQMR=59.9567;NS=94;NUMALT=1;ODDS=3.8;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208781;QR=68239;RO=1916;RPL=1;RPP=12680.1;RPPR=4085.75;RPR=5841;RUN=1;SAF=5841;SAP=12680.1;SAR=1;SRF=1916;SRP=4163.55;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	0/1:134:70,64:70:2495:64:2292:-166.203,0,-184.462	0/1:42:21,21:21:735:21:756:-55.724,0,-53.8281	0/1:186:98,88:98:3485:88:3151:-227.823,0,-257.866	0/1:30:19,11:19:671:11:396:-26.9518,0,-51.6849	0/1:69:29,40:29:1036:40:1428:-108.046,0,-72.7828	1/1:114:0,114:0:0:114:4083:-367.641,-34.3174,0	0/1:150:80,70:80:2839:70:2508:-180.818,0,-210.595	0/1:80:49,31:49:1732:31:1116:-76.6693,0,-131.851	1/1:150:0,150:0:0:150:5352:-481.767,-45.1545,0	0/1:70:37,33:37:1320:33:1184:-85.7786,0,-98.0298	1/1:59:0,59:0:0:59:2103:-189.539,-17.7608,0	0/1:72:39,32:39:1396:32:1148:-81.8969,0,-104.206	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:64:0,64:0:0:64:2285:-205.908,-19.2659,0	1/1:38:1,37:1:36:37:1332:-116.584,-7.84087,0	0/1:80:41,39:41:1453:39:1400:-102.217,0,-106.982	0/1:87:42,45:42:1494:45:1616:-119.54,0,-108.563	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:136:0,136:0:0:136:4867:-438.183,-40.9401,0	0/1:141:60,81:60:2130:81:2826:-212.129,0,-149.522	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:102:43,59:43:1536:59:2097:-158.294,0,-107.828	1/1:109:10,99:10:360:99:3552:-287.143,-0.0679682,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:288:126,162:126:4499:162:5779:-433.526,0,-318.383	0/1:149:63,86:63:2248:86:3058:-230.592,0,-157.24	0/1:43:18,25:18:644:25:900:-68.3767,0,-45.3463	0/1:252:119,133:119:4230:133:4760:-352.698,0,-305.022	1/1:147:4,143:4:144:143:5105:-446.28,-30.9378,0	1/1:127:1,126:1:36:126:4516:-403.009,-34.6325,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:6:5,1:5:176:1:27:-0.893603,0,-14.3788	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:183:0,183:0:0:183:6535:-588.233,-55.0885,0	1/1:154:0,154:0:0:154:5482:-493.489,-46.3586,0	0/1:44:24,20:24:860:20:711:-51.0703,0,-64.4765	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:137:77,60:77:2748:60:2148:-152.346,0,-206.322	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:82:0,82:0:0:82:2924:-263.396,-24.6845,0	1/1:98:0,98:0:0:98:3495:-314.761,-29.5009,0	1/1:74:1,73:1:36:73:2607:-231.28,-18.6779,0	1/1:57:0,57:0:0:57:2043:-184.141,-17.1587,0	0/1:93:43,50:43:1523:50:1788:-133.207,0,-109.367	1/1:140:0,140:0:0:140:5005:-450.596,-42.1442,0	0/1:105:56,49:56:1996:49:1764:-127.436,0,-148.306	1/1:134:0,134:0:0:134:4777:-430.087,-40.338,0	1/1:104:0,104:0:0:104:3728:-335.721,-31.3071,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:55:32,23:32:1144:23:828:-58.2875,0,-86.7129	1/1:50:0,50:0:0:50:1780:-160.481,-15.0515,0	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:40:0,39:0:0:39:1400:-125.939,-11.7402,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	0/1:88:52,36:52:1847:36:1284:-89.3728,0,-140.019	0/1:99:55,44:55:1959:44:1580:-112.69,0,-146.783	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:263:0,263:0:0:263:9414:-847.221,-79.1709,0	0/1:101:50,50:50:1775:50:1796:-131.46,0,-129.57	0/1:53:31,22:31:1112:22:784:-54.9288,0,-84.4368	0/1:27:17,10:17:589:10:360:-24.6165,0,-45.2055	1/1:106:0,106:0:0:106:3791:-341.388,-31.9092,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	0/1:12:9,3:9:324:3:108:-6.46281,0,-25.8935	1/1:32:0,32:0:0:32:1143:-103.179,-9.63296,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	0/1:18:7,10:7:248:10:360:-27.267,0,-17.1876	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:79:44,35:44:1567:35:1245:-88.5713,0,-117.54	0/1:164:60,104:60:2127:104:3716:-285.273,0,-142.329	1/1:180:0,176:0:0:176:6307:-567.361,-52.9813,0	0/1:57:21,36:21:752:36:1265:-96.9919,0,-50.8475	1/1:134:3,131:3:108:131:4683:-411.555,-30.2629,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:93:39,54:39:1391:54:1929:-145.89,0,-97.4925	0/1:124:51,73:51:1823:73:2615:-198.269,0,-127.023	1/1:132:0,132:0:0:132:4707:-423.791,-39.736,0	0/1:113:63,50:63:2256:50:1789:-127.275,0,-169.287	0/1:55:19,36:19:676:36:1277:-98.6753,0,-44.5937	1/1:107:0,107:0:0:107:3823:-344.267,-32.2102,0	1/1:175:0,175:0:0:175:6250:-562.593,-52.6803,0	0/1:41:17,24:17:612:24:860:-65.3796,0,-43.0712	0/1:82:36,46:36:1283:46:1639:-123.113,0,-91.0882	0/1:74:37,37:37:1328:37:1314:-96.284,0,-97.546	0/1:26:9,17:9:305:17:612:-47.5867,0,-19.9504	0/1:69:32,37:32:1143:37:1317:-98.0588,0,-82.4076	0/1:65:46,19:46:1652:19:677:-41.6909,0,-129.402	1/1:140:0,140:0:0:140:5011:-451.136,-42.1442,0	1/1:94:0,94:0:0:94:3349:-301.626,-28.2968,0
chr11	31580669	.	T	C	31262.1	PASS	AB=0.479438;ABP=17.6552;AC=48;AF=0.255319;AN=188;AO=1925;CIGAR=1X;DP=7794;DPB=7794;DPRA=1.1374;EPP=4183.09;EPPR=12738.7;GTI=2;LEN=1;MEANALT=1;MQM=59.9569;MQMR=59.9704;NS=94;NUMALT=1;ODDS=3.77575;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68172;QR=209437;RO=5869;RPL=1925;RPP=4183.09;RPPR=12730;RPR=0;RUN=1;SAF=1925;SAP=4183.09;SAR=0;SRF=5866;SRP=12721.3;SRR=3;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:27:27,0:27:959:0:0:0,-8.12781,-86.6172	0/1:136:66,70:66:2326:70:2475:-182.061,0,-168.657	0/1:43:22,21:22:756:21:734:-53.4361,0,-55.4107	0/1:188:89,99:89:3187:99:3500:-258.615,0,-230.459	0/1:32:12,20:12:428:20:720:-55.4958,0,-29.2258	0/1:68:39,29:39:1387:29:1013:-71.0093,0,-104.658	0/0:117:117,0:117:4163:0:0:0,-35.2205,-374.28	0/1:150:71,79:71:2548:79:2798:-206.906,0,-184.416	0/1:79:30,49:30:1080:49:1731:-132.063,0,-73.7319	0/0:145:145,0:145:5168:0:0:0,-43.6493,-465.215	0/1:70:33,37:33:1175:37:1311:-97.2188,0,-84.9672	0/0:60:60,0:60:2124:0:0:0,-18.0618,-191.426	0/1:71:31,40:31:1093:40:1404:-105.281,0,-77.3045	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.02	0/0:39:39,0:39:1361:0:0:0,-11.7402,-122.777	0/1:81:40,41:40:1440:41:1433:-104.88,0,-105.514	0/1:85:45,40:45:1603:40:1415:-102.059,0,-118.972	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:136:136,0:136:4880:0:0:0,-40.9401,-439.351	0/1:140:80,60:80:2876:60:2118:-148.744,0,-216.932	0/0:57:57,0:57:2027:0:0:0,-17.1587,-182.702	0/1:105:62,43:62:2208:43:1540:-107.285,0,-167.374	0/1:107:97,10:97:3460:10:360:-0.534093,0,-279.403	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:296:167,129:167:5948:129:4585:-323.707,0,-446.295	0/1:152:87,65:87:3116:65:2324:-163.173,0,-234.907	0/1:43:25,18:25:882:18:644:-45.3463,0,-66.7522	0/1:254:133,121:133:4732:121:4311:-311.706,0,-349.578	0/0:149:145,4:145:5133:4:144:0,-31.5399,-448.796	0/0:129:128,1:128:4551:1:36:0,-35.2346,-406.158	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:186:186,0:186:6641:0:0:0,-55.9916,-597.769	0/0:156:156,0:156:5587:0:0:0,-46.9607,-502.939	0/1:43:20,23:20:720:23:812:-60.4566,0,-52.1845	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:137:60,77:60:2152:77:2732:-204.881,0,-152.706	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:74:73,1:73:2619:1:36:0,-18.6779,-232.358	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:92:48,44:48:1720:44:1530:-110.293,0,-127.391	0/0:142:142,0:142:5081:0:0:0,-42.7463,-457.432	0/1:107:49,58:49:1752:58:2045:-152.11,0,-125.754	0/0:134:134,0:134:4793:0:0:0,-40.338,-431.525	0/0:105:105,0:105:3735:0:0:0,-31.6081,-336.35	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:56:24,32:24:860:32:1144:-86.4118,0,-60.8642	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.426	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.373	0/0:42:42,0:42:1461:0:0:0,-12.6433,-131.78	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2702	0/1:89:36,53:36:1292:53:1884:-143.047,0,-89.7921	0/1:98:44,54:44:1580:54:1902:-141.956,0,-112.991	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:264:264,0:264:9471:0:0:0,-79.4719,-852.346	0/1:99:52,47:52:1845:47:1660:-119.883,0,-136.526	0/1:53:23,30:23:805:30:1080:-81.5587,0,-56.8129	0/1:27:10,17:10:360:17:608:-46.9242,0,-24.6165	0/0:105:105,0:105:3744:0:0:0,-31.6081,-337.159	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:12:3,9:3:108:9:316:-25.1665,0,-6.46281	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.43	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	0/0:56:56,0:56:1994:0:0:0,-16.8577,-179.733	0/1:80:34,46:34:1224:46:1626:-122.545,0,-86.3846	0/1:163:104,59:104:3710:59:2089:-139.21,0,-285.034	0/0:182:182,0:182:6482:0:0:0,-54.7875,-583.468	0/1:54:33,21:33:1175:21:752:-51.7506,0,-89.8013	0/0:132:129,3:129:4624:3:108:0,-29.6608,-406.247	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	0/1:92:53,39:53:1883:39:1383:-97.0733,0,-142.053	0/1:126:73,53:73:2620:53:1887:-132.178,0,-198.117	0/0:130:130,0:130:4614:0:0:0,-39.1339,-415.422	0/1:112:50,62:50:1792:62:2202:-164.729,0,-127.847	0/1:56:36,20:36:1288:20:691:-45.6455,0,-99.3659	0/0:105:105,0:105:3737:0:0:0,-31.6081,-336.531	0/0:174:174,0:174:6193:0:0:0,-52.3792,-557.47	0/1:42:24,18:24:864:18:636:-44.9248,0,-65.4393	0/1:85:48,37:48:1715:37:1281:-90.0008,0,-129.047	0/1:72:37,35:37:1304:35:1239:-90.1395,0,-95.9845	0/1:26:17,9:17:604:9:312:-20.5886,0,-46.8638	0/1:69:36,33:36:1292:33:1176:-85.3767,0,-95.8127	0/1:65:18,47:18:639:47:1657:-129.849,0,-38.2713	0/0:141:141,0:141:5045:0:0:0,-42.4452,-454.194	0/0:95:95,0:95:3367:0:0:0,-28.5978,-303.246
chr11	31633728	.	A	T	4944.39	PASS	AB=0.407776;ABP=232.91;AC=43;AF=0.231183;AN=186;AO=1301;CIGAR=1X;DP=6644;DPB=6644;DPRA=1.05551;EPP=2819.42;EPPR=11583.5;GTI=19;LEN=1;MEANALT=1;MQM=22.4343;MQMR=23.7446;NS=93;NUMALT=1;ODDS=0.57055;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=46609;QR=190212;RO=5341;RPL=1;RPP=2819.42;RPPR=11600.8;RPR=1300;RUN=1;SAF=0;SAP=2828.1;SAR=1301;SRF=2;SRP=11583.5;SRR=5339;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:16,19:16:572:19:684:-16.4624,0,-14.9252	0/0:71:71,0:71:2506:0:0:0,-21.3731,-113.029	0/1:88:40,48:40:1432:48:1728:-44.1446,0,-37.4259	0/0:120:120,0:120:4273:0:0:0,-36.1236,-280.511	0/0:45:45,0:45:1612:0:0:0,-13.5463,-93.9391	0/0:26:26,0:26:932:0:0:0,-7.82678,-40.97	0/1:70:28,42:28:973:42:1508:-67.4463,0,-44.7187	0/0:47:47,0:47:1662:0:0:0,-14.1484,-74.4398	0/1:51:23,28:23:819:28:996:-24.4689,0,-21.1921	0/0:65:65,0:65:2297:0:0:0,-19.5669,-148.835	0/0:32:32,0:32:1131:0:0:0,-9.63296,-75.1151	0/1:30:15,15:15:536:15:528:-12.6547,0,-14.2708	0/1:30:12,18:12:413:18:648:-16.9804,0,-10.3547	0/1:47:25,22:25:882:22:780:-29.2304,0,-37.262	0/0:40:40,0:40:1428:0:0:0,-12.0412,-91.0897	0/0:26:26,0:26:928:0:0:0,-7.82678,-54.1371	0/0:43:43,0:43:1540:0:0:0,-12.9443,-69.0244	0/0:32:32,0:32:1148:0:0:0,-9.63296,-50.7438	0/0:15:15,0:15:531:0:0:0,-4.51545,-23.8093	0/1:96:53,43:53:1899:43:1533:-62.5835,0,-97.2314	0/0:96:96,0:96:3414:0:0:0,-28.8989,-197.653	0/1:96:32,64:32:1133:64:2300:-120.937,0,-53.4085	0/1:73:36,37:36:1274:37:1324:-54.238,0,-63.3449	0/1:151:109,42:109:3902:42:1500:-35.4111,0,-173.227	0/0:42:42,0:42:1495:0:0:0,-12.6433,-86.9806	0/0:316:315,0:315:11250:0:0:0,-94.8244,-778.971	0/1:138:78,60:78:2777:60:2130:-72.2178,0,-116.428	0/0:57:50,7:50:1796:7:252:0,-3.18655,-90.3582	0/1:141:68,73:68:2417:73:2624:-129.826,0,-134.31	0/1:88:45,43:45:1601:43:1548:-57.242,0,-67.722	0/0:181:181,0:181:6457:0:0:0,-54.4864,-411.251	0/0:4:4,0:4:144:0:0:0,-1.20412,-8.07448	0/0:8:8,0:8:284:0:0:0,-2.40824,-16.7634	0/1:3:2,1:2:72:1:36:-0.692697,0,-2.1289	0/0:4:4,0:4:144:0:0:0,-1.20412,-6.63513	0/1:12:9,3:9:320:3:108:-0.39193,0,-10.4538	0/0:102:102,0:102:3605:0:0:0,-30.7051,-260.643	0/0:113:113,0:113:4020:0:0:0,-34.0164,-234.69	0/0:30:30,0:30:1071:0:0:0,-9.0309,-46.7675	1/1:1:0,1:0:0:1:36:-2.18315,-0.30103,0	0/1:180:149,31:149:5321:31:1112:-5.87609,0,-236.521	0/1:40:32,8:32:1152:8:284:-2.64126,0,-53.4343	0/1:70:33,37:33:1184:37:1320:-50.2351,0,-49.0161	0/1:42:19,23:19:676:23:828:-35.1374,0,-32.4553	0/0:39:39,0:39:1365:0:0:0,-11.7402,-91.0232	0/0:79:79,0:79:2832:0:0:0,-23.7814,-202.957	0/0:58:58,0:58:2072:0:0:0,-17.4597,-93.3074	0/1:277:198,79:198:7052:79:2828:-83.1936,0,-363.414	0/0:105:105,0:105:3772:0:0:0,-31.6081,-247.096	0/0:68:68,0:68:2429:0:0:0,-20.47,-160.874	0/0:120:120,0:120:4307:0:0:0,-36.1236,-303.974	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.6486	0/0:201:201,0:201:7181:0:0:0,-60.507,-317.956	0/0:18:18,0:18:644:0:0:0,-5.41854,-47.2109	0/1:14:11,3:11:396:3:108:-0.161276,0,-11.2892	0/1:152:110,42:110:3908:42:1508:-35.6472,0,-178.909	0/0:42:41,1:41:1472:1:36:0,-10.2697,-94.7653	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.90276	0/1:4:3,1:3:108:1:36:-1.44448,0,-6.92362	0/0:65:65,0:65:2303:0:0:0,-19.5669,-133.826	0/1:67:34,33:34:1220:33:1174:-49.2464,0,-58.9505	.:.:.:.:.:.:.:.	0/1:150:60,90:60:2133:90:3236:-171.592,0,-109.437	0/1:108:54,54:54:1932:54:1936:-82.6501,0,-94.6957	0/1:117:97,20:97:3455:20:720:-3.76295,0,-162.817	0/1:48:19,29:19:676:29:1044:-47.5651,0,-30.9025	0/0:85:85,0:85:3024:0:0:0,-25.5875,-199.469	0/1:64:21,43:21:756:43:1544:-69.4369,0,-30.9761	0/1:9:5,4:5:176:4:140:-4.36355,0,-8.17476	0/1:66:29,37:29:1040:37:1324:-32.2574,0,-26.7536	0/1:49:31,18:31:1090:18:640:-27.7901,0,-64.0744	0/1:24:18,6:18:635:6:216:-3.23616,0,-33.7172	0/0:78:77,0:77:2760:0:0:0,-23.1793,-122.472	0/0:137:137,0:137:4912:0:0:0,-41.2411,-213.083	0/0:63:63,0:63:2244:0:0:0,-18.9649,-131.043	0/0:77:77,0:77:2764:0:0:0,-23.1793,-181.136	0/0:98:78,20:78:2770:20:720:0,-0.706899,-87.9061	0/0:69:69,0:69:2468:0:0:0,-20.7711,-110.349	0/1:4:2,2:2:72:2:72:-1.73372,0,-2.20311	0/0:65:65,0:65:2306:0:0:0,-19.5669,-135.15	0/1:130:96,34:96:3412:34:1208:-9.29199,0,-107.928	0/0:122:122,0:122:4333:0:0:0,-36.7257,-283.873	0/0:65:65,0:65:2295:0:0:0,-19.5669,-151.38	0/1:37:21,16:21:752:16:576:-23.1923,0,-38.7938	0/0:57:57,0:57:2004:0:0:0,-17.1587,-132.695	0/1:91:53,38:53:1874:38:1368:-54.9216,0,-96.4995	0/1:24:8,16:8:284:16:576:-14.9229,0,-5.1401	0/0:116:116,0:116:4075:0:0:0,-34.9195,-180.466	0/0:77:77,0:77:2740:0:0:0,-23.1793,-119.238	0/0:6:6,0:6:216:0:0:0,-1.80618,-13.0544	0/1:88:71,17:71:2544:17:608:-6.9323,0,-113.032	0/1:108:78,30:78:2740:30:1076:-31.4339,0,-140.452	0/0:66:63,3:63:2214:3:108:0,-13.2221,-136.554	0/0:38:38,0:38:1360:0:0:0,-11.4391,-90.3953
chr11	31633736	.	T	A	977.012	PASS	AB=0.328293;ABP=646.562;AC=22;AF=0.11828;AN=186;AO=845;CIGAR=1X;DP=6717;DPB=6717;DPRA=1.97797;EPP=1837.9;EPPR=12717;GTI=13;LEN=1;MEANALT=1;MQM=21.4331;MQMR=23.7682;NS=93;NUMALT=1;ODDS=0.535208;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30205;QR=209285;RO=5871;RPL=0;RPP=1837.9;RPPR=12734.4;RPR=845;RUN=1;SAF=0;SAP=1837.9;SAR=845;SRF=2;SRP=12734.4;SRR=5869;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1268:0:0:0,-10.8371,-53.7704	0/0:72:72,0:72:2526:0:0:0,-21.6742,-113.624	0/0:90:88,2:88:3144:2:72:0,-24.0607,-130.17	0/0:121:120,0:120:4281:0:0:0,-36.1236,-279.468	0/0:44:44,0:44:1576:0:0:0,-13.2453,-91.8336	0/0:25:25,0:25:900:0:0:0,-7.52575,-39.2752	0/0:70:70,0:70:2504:0:0:0,-21.0721,-155.9	0/0:44:44,0:44:1572:0:0:0,-13.2453,-69.8267	0/0:52:52,0:52:1844:0:0:0,-15.6536,-77.1902	0/0:69:69,0:69:2464:0:0:0,-20.7711,-158.005	0/0:33:33,0:33:1184:0:0:0,-9.93399,-77.8463	0/0:30:30,0:30:1072:0:0:0,-9.0309,-44.84	0/0:30:30,0:30:1072:0:0:0,-9.0309,-45.3719	0/0:48:48,0:48:1693:0:0:0,-14.4494,-95.5693	0/0:40:40,0:40:1428:0:0:0,-12.0412,-91.0897	0/0:25:25,0:25:884:0:0:0,-7.52575,-51.9334	0/0:43:43,0:43:1548:0:0:0,-12.9443,-69.0424	0/0:32:32,0:32:1148:0:0:0,-9.63296,-50.7438	0/0:16:16,0:16:572:0:0:0,-4.81648,-25.4544	0/0:98:98,0:98:3516:0:0:0,-29.5009,-222.201	0/0:102:102,0:102:3617:0:0:0,-30.7051,-208.591	0/0:96:96,0:96:3436:0:0:0,-28.8989,-231.135	0/0:74:74,0:74:2644:0:0:0,-22.2762,-164.03	0/1:154:108,46:108:3827:46:1648:-39.4507,0,-172.622	0/0:43:43,0:43:1540:0:0:0,-12.9443,-89.221	0/1:316:212,104:212:7596:104:3732:-148.908,0,-443.914	0/0:135:135,0:135:4820:0:0:0,-40.639,-265.604	0/1:57:40,17:40:1428:17:612:-17.5682,0,-66.3572	0/0:141:141,0:141:5048:0:0:0,-42.4452,-349.73	0/0:87:80,7:80:2860:7:243:0,-12.3105,-147.285	0/1:184:114,70:114:4080:70:2515:-93.8692,0,-213.109	0/1:4:1,3:1:36:3:108:-4.7278,0,-1.16941	0/0:8:8,0:8:284:0:0:0,-2.40824,-16.7634	0/1:3:1,2:1:36:2:72:-2.1289,0,-0.692697	0/0:4:4,0:4:144:0:0:0,-1.20412,-6.63513	0/1:12:9,3:9:320:3:108:-0.855843,0,-10.0009	0/0:102:102,0:102:3652:0:0:0,-30.7051,-261.95	0/0:112:110,2:110:3932:2:72:0,-28.223,-222.357	0/0:30:30,0:30:1056:0:0:0,-9.0309,-46.5808	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.18315	0/1:181:112,69:112:4012:69:2469:-72.1536,0,-171.188	0/1:40:31,9:31:1100:9:320:-5.8385,0,-50.1238	0/0:70:70,0:70:2481:0:0:0,-21.0721,-140.629	0/0:41:41,0:41:1464:0:0:0,-12.3422,-90.5492	0/0:39:39,0:39:1392:0:0:0,-11.7402,-91.6079	0/0:81:81,0:81:2878:0:0:0,-24.3834,-206.67	0/0:59:59,0:59:2093:0:0:0,-17.7608,-94.7704	0/1:284:218,66:218:7773:66:2356:-55.0285,0,-403.899	0/0:107:107,0:107:3794:0:0:0,-32.2102,-249.337	0/0:70:70,0:70:2485:0:0:0,-21.0721,-165.086	0/0:123:123,0:123:4404:0:0:0,-37.0267,-311.809	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.6486	0/1:204:148,56:148:5292:56:1997:-25.5785,0,-174.615	0/0:19:19,0:19:669:0:0:0,-5.71957,-48.9245	0/1:13:5,8:5:180:8:288:-7.46407,0,-3.69943	0/1:151:112,39:112:3958:39:1397:-31.2434,0,-181.064	0/0:42:42,0:42:1492:0:0:0,-12.6433,-99.0407	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.90276	0/0:4:4,0:4:140:0:0:0,-1.20412,-10.3987	0/0:67:67,0:67:2384:0:0:0,-20.169,-137.155	0/0:69:68,1:68:2436:1:36:0,-18.3975,-147.752	.:.:.:.:.:.:.:.	0/0:151:151,0:151:5385:0:0:0,-45.4555,-373.879	0/0:107:105,2:105:3683:2:72:0,-27.7005,-229.868	0/1:121:78,43:78:2788:43:1529:-49.1453,0,-120.341	0/0:48:48,0:48:1728:0:0:0,-14.4494,-107.236	0/0:87:85,2:85:3032:2:72:0,-21.6799,-195.995	0/0:64:64,0:64:2265:0:0:0,-19.2659,-138.285	0/0:9:9,0:9:316:0:0:0,-2.70927,-17.7133	0/0:63:63,0:63:2244:0:0:0,-18.9649,-94.2476	0/0:50:50,0:50:1792:0:0:0,-15.0515,-124.645	0/1:26:20,6:20:716:6:216:-3.88456,0,-35.2234	0/0:80:80,0:80:2824:0:0:0,-24.0824,-126.957	0/1:140:94,46:94:3325:46:1639:-23.9816,0,-108.606	0/0:65:65,0:65:2320:0:0:0,-19.5669,-135.374	0/0:78:78,0:78:2785:0:0:0,-23.4803,-182.998	0/1:98:47,51:47:1680:51:1832:-44.8099,0,-42.3285	0/0:70:70,0:70:2464:0:0:0,-21.0721,-111.923	0/0:4:4,0:4:129:0:0:0,-1.20412,-6.07404	0/0:68:67,1:67:2380:1:36:0,-18.2869,-137.529	0/1:132:72,60:72:2580:60:2148:-49.8455,0,-68.2476	0/0:125:122,3:122:4352:3:104:0,-31.0176,-278.346	0/0:69:69,0:69:2472:0:0:0,-20.7711,-161.957	0/0:37:37,0:37:1328:0:0:0,-11.1381,-84.2902	0/0:57:57,0:57:2032:0:0:0,-17.1587,-132.194	0/0:90:90,0:90:3228:0:0:0,-27.0927,-203.957	0/0:24:24,0:24:860:0:0:0,-7.22472,-34.7937	0/1:116:79,37:79:2801:37:1313:-21.0735,0,-90.4952	0/1:78:51,27:51:1813:27:951:-15.1579,0,-58.3092	0/0:6:6,0:6:216:0:0:0,-1.80618,-13.0544	0/1:89:63,26:63:2252:26:924:-23.0794,0,-99.4692	0/1:110:73,37:73:2624:37:1324:-43.3935,0,-131.474	0/0:66:66,0:66:2352:0:0:0,-19.868,-148.815	0/0:40:40,0:40:1432:0:0:0,-12.0412,-94.9421
chr11	31633748	.	T	C	1159.66	PASS	AB=0.327107;ABP=656.264;AC=22;AF=0.11828;AN=186;AO=844;CIGAR=1X;DP=6740;DPB=6740;DPRA=1.93577;EPP=1699.39;EPPR=12008.8;GTI=11;LEN=1;MEANALT=1;MQM=21.4135;MQMR=23.7598;NS=93;NUMALT=1;ODDS=0.806162;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30197;QR=211199;RO=5895;RPL=828;RPP=1699.39;RPPR=12025.6;RPR=16;RUN=1;SAF=0;SAP=1835.73;SAR=844;SRF=2;SRP=12786.5;SRR=5893;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:35:35,0:35:1256:0:0:0,-10.536,-52.3751	0/0:71:71,0:71:2552:0:0:0,-21.3731,-112.352	0/0:90:88,2:88:3153:2:72:0,-24.0607,-130.528	0/0:121:120,0:120:4312:0:0:0,-36.1236,-280.212	0/0:45:45,0:45:1612:0:0:0,-13.5463,-93.9699	0/0:29:29,0:29:1040:0:0:0,-8.72987,-45.5506	0/0:71:71,0:71:2533:0:0:0,-21.3731,-157.692	0/0:46:46,0:46:1648:0:0:0,-13.8474,-72.8889	0/0:52:52,0:52:1872:0:0:0,-15.6536,-78.7266	0/0:68:68,0:68:2429:0:0:0,-20.47,-156.695	0/0:34:34,0:34:1224:0:0:0,-10.235,-80.2913	0/0:30:30,0:30:1080:0:0:0,-9.0309,-44.8479	0/0:30:30,0:30:1080:0:0:0,-9.0309,-45.3866	0/0:48:48,0:48:1724:0:0:0,-14.4494,-96.0851	0/0:40:40,0:40:1440:0:0:0,-12.0412,-91.2731	0/0:26:26,0:26:936:0:0:0,-7.82678,-54.2043	0/0:43:43,0:43:1548:0:0:0,-12.9443,-69.0424	0/0:32:32,0:32:1144:0:0:0,-9.63296,-50.7348	0/0:16:16,0:16:576:0:0:0,-4.81648,-25.4634	0/0:97:97,0:97:3488:0:0:0,-29.1999,-220.023	0/0:103:103,0:103:3677:0:0:0,-31.0061,-211.5	0/0:97:97,0:97:3476:0:0:0,-29.1999,-233.623	0/0:75:75,0:75:2680:0:0:0,-22.5772,-166.383	0/1:158:111,47:111:3984:47:1687:-39.9518,0,-177.175	0/0:43:43,0:43:1544:0:0:0,-12.9443,-89.2545	0/1:311:208,103:208:7446:103:3696:-146.902,0,-437.059	0/0:138:138,0:138:4936:0:0:0,-41.5421,-271.81	0/1:57:40,17:40:1440:17:608:-17.5462,0,-66.4462	0/0:143:143,0:143:5132:0:0:0,-43.0473,-354.831	0/0:89:82,7:82:2948:7:248:0,-12.8417,-151.59	0/1:186:115,71:115:4132:71:2540:-95.3076,0,-215.048	0/1:4:1,3:1:36:3:108:-4.7278,0,-1.16941	0/0:8:8,0:8:284:0:0:0,-2.40824,-16.7634	0/1:3:1,2:1:36:2:72:-2.1289,0,-0.692697	0/0:4:4,0:4:144:0:0:0,-1.20412,-6.63513	0/1:12:9,3:9:324:3:108:-0.855843,0,-10.01	0/0:102:102,0:102:3668:0:0:0,-30.7051,-263.625	0/0:113:111,2:111:3942:2:72:0,-28.524,-223.749	0/0:30:30,0:30:1076:0:0:0,-9.0309,-46.444	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.18315	0/1:180:110,70:110:3956:70:2516:-74.7003,0,-167.996	0/1:40:31,9:31:1104:9:320:-5.8385,0,-50.1574	0/0:70:70,0:70:2508:0:0:0,-21.0721,-139.896	0/0:41:41,0:41:1472:0:0:0,-12.3422,-90.3086	0/0:38:38,0:38:1368:0:0:0,-11.4391,-90.4364	0/0:81:81,0:81:2908:0:0:0,-24.3834,-208.438	0/0:59:59,0:59:2124:0:0:0,-17.7608,-94.9573	0/1:283:218,65:218:7768:65:2324:-53.34,0,-402.919	0/0:109:109,0:109:3904:0:0:0,-32.8123,-255.169	0/0:70:70,0:70:2520:0:0:0,-21.0721,-165.973	0/0:121:121,0:121:4333:0:0:0,-36.4246,-306.892	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.6486	0/1:204:147,57:147:5264:57:2033:-26.2302,0,-173.019	0/0:19:19,0:19:676:0:0:0,-5.71957,-49.532	0/1:14:6,8:6:216:8:288:-7.16304,0,-4.28658	0/1:151:113,38:113:4048:38:1368:-29.2936,0,-184.17	0/0:42:42,0:42:1493:0:0:0,-12.6433,-98.6646	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.90276	0/0:4:4,0:4:144:0:0:0,-1.20412,-10.5051	0/0:67:67,0:67:2393:0:0:0,-20.169,-136.982	0/0:69:68,1:68:2448:1:36:0,-18.3975,-147.853	.:.:.:.:.:.:.:.	0/0:150:150,0:150:5380:0:0:0,-45.1545,-371.419	0/0:109:107,2:107:3840:2:72:0,-28.3026,-235.817	0/1:122:80,42:80:2849:42:1504:-47.074,0,-123.961	0/0:47:47,0:47:1688:0:0:0,-14.1484,-104.818	0/0:89:87,2:87:3097:2:72:0,-22.282,-200.222	0/0:65:65,0:65:2317:0:0:0,-19.5669,-140.643	0/0:9:9,0:9:309:0:0:0,-2.70927,-17.7474	0/0:64:64,0:64:2266:0:0:0,-19.2659,-95.4202	0/0:50:49,1:49:1764:1:36:0,-12.3153,-119.653	0/1:25:19,6:19:684:6:216:-4.18559,0,-33.2005	0/0:81:81,0:81:2896:0:0:0,-24.3834,-128.641	0/1:142:95,47:95:3412:47:1688:-24.8341,0,-109.849	0/0:65:65,0:65:2332:0:0:0,-19.5669,-135.45	0/0:76:76,0:76:2698:0:0:0,-22.8783,-179.076	0/1:98:47,51:47:1688:51:1813:-44.4341,0,-42.3399	0/0:71:71,0:71:2544:0:0:0,-21.3731,-113.586	0/0:4:4,0:4:144:0:0:0,-1.20412,-6.17809	0/0:68:67,1:67:2381:1:36:0,-18.2869,-137.227	0/1:132:73,59:73:2616:59:2101:-48.3137,0,-69.6844	0/0:122:119,3:119:4280:3:108:0,-30.0798,-271.801	0/0:69:69,0:69:2484:0:0:0,-20.7711,-162.129	0/0:38:38,0:38:1364:0:0:0,-11.4391,-86.3984	0/0:58:58,0:58:2076:0:0:0,-17.4597,-134.7	0/0:90:90,0:90:3232:0:0:0,-27.0927,-204.382	0/0:25:25,0:25:900:0:0:0,-7.52575,-35.7862	0/1:118:81,37:81:2916:37:1324:-20.5741,0,-92.8885	0/1:78:51,27:51:1836:27:957:-15.1345,0,-58.4763	0/0:6:6,0:6:216:0:0:0,-1.80618,-13.0544	0/1:89:64,25:64:2300:25:878:-20.1537,0,-101.706	0/1:109:73,36:73:2609:36:1296:-42.7442,0,-131.166	0/0:66:66,0:66:2338:0:0:0,-19.868,-148.931	0/0:40:40,0:40:1436:0:0:0,-12.0412,-94.9757
chr11	31635620	.	C	A	148610	PASS	AB=0.491732;ABP=5.73929;AC=138;AF=0.741935;AN=186;AO=7090;CIGAR=1X;DP=9437;DPB=9437;DPRA=51.2772;EPP=15398.7;EPPR=5095.11;GTI=1;LEN=1;MEANALT=1.02174;MQM=59.9928;MQMR=60;NS=93;NUMALT=1;ODDS=1.67812;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=252223;QR=82760;RO=2345;RPL=7088;RPP=15381.4;RPPR=5095.11;RPR=2;RUN=1;SAF=7088;SAP=15381.4;SAR=2;SRF=2345;SRP=5095.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	0/1:143:71,72:71:2527:72:2548:-186.524,0,-184.634	0/1:129:72,57:72:2558:57:2032:-144.32,0,-191.637	0/1:237:116,121:116:4135:121:4336:-319.07,0,-300.991	0/1:83:45,38:45:1582:38:1359:-97.6243,0,-117.683	0/1:46:27,19:27:957:19:680:-47.6818,0,-72.5965	1/1:102:0,102:0:0:102:3616:-325.644,-30.7051,0	0/1:179:93,86:93:3291:86:3049:-220.753,0,-242.525	0/1:87:41,46:41:1463:46:1637:-121.428,0,-105.776	1/1:123:0,123:0:0:123:4389:-395.183,-37.0267,0	0/1:42:25,17:25:883:17:604:-42.0468,0,-67.1442	1/1:51:0,51:0:0:51:1812:-163.362,-15.3525,0	0/1:64:31,33:31:1099:33:1180:-87.2421,0,-79.9535	1/1:48:0,48:0:0:48:1710:-154.185,-14.4494,0	1/1:53:0,53:0:0:53:1887:-170.108,-15.9546,0	1/1:44:0,44:0:0:44:1563:-140.961,-13.2453,0	0/1:44:23,21:23:784:21:756:-55.1219,0,-57.6272	0/1:37:22,15:22:764:15:540:-37.7984,0,-57.9386	1/1:19:0,19:0:0:19:673:-60.896,-5.71957,0	1/1:215:0,215:0:0:215:7636:-687.279,-64.7215,0	0/1:155:79,76:79:2764:76:2705:-197.033,0,-202.341	1/1:158:0,158:0:0:158:5639:-507.63,-47.5627,0	0/1:65:29,36:29:1021:36:1290:-96.8368,0,-72.6333	1/1:135:1,134:1:36:134:4779:-426.667,-37.0408,0	1/1:115:0,115:0:0:115:4095:-368.737,-34.6185,0	0/1:362:195,167:195:6844:167:5944:-426.097,0,-507.063	0/1:236:92,144:92:3238:144:5122:-390.079,0,-220.599	0/1:23:12,11:12:428:11:387:-28.2422,0,-31.9351	0/1:371:198,173:198:6963:173:6162:-442.997,0,-515.064	1/1:167:3,164:3:108:164:5833:-515.009,-40.1968,0	1/1:125:0,125:0:0:125:4439:-399.684,-37.6288,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:22:14,8:14:487:8:284:-19.2807,0,-37.5365	.:.:.:.:.:.:.:.	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:7:0,7:0:0:7:244:-22.2994,-2.10721,0	1/1:146:0,146:0:0:146:5198:-467.96,-43.9504,0	1/1:237:1,236:1:36:236:8412:-753.49,-67.7458,0	0/1:31:13,18:13:468:18:640:-48.5974,0,-33.1277	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:145:77,68:77:2686:68:2432:-175.486,0,-198.336	1/1:26:0,26:0:0:26:907:-81.9425,-7.82678,0	1/1:149:0,149:0:0:149:5250:-472.64,-44.8535,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	1/1:55:0,55:0:0:55:1944:-175.236,-16.5567,0	1/1:135:0,135:0:0:135:4777:-430.088,-40.6391,0	0/1:144:70,74:70:2472:74:2637:-194.227,0,-179.384	1/1:313:0,312:0:0:312:11123:-1000.6,-93.9214,0	0/1:113:56,57:56:1982:57:2044:-150.215,0,-144.637	1/1:124:0,124:0:0:124:4437:-399.499,-37.3277,0	1/1:125:0,125:0:0:125:4481:-403.457,-37.6288,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:150:80,70:80:2857:70:2493:-179.467,0,-212.212	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:23:0,23:0:0:23:819:-74.0316,-6.92369,0	1/1:130:0,130:0:0:130:4564:-410.929,-39.1339,0	1/1:83:0,83:0:0:83:2972:-267.712,-24.9855,0	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:91:42,49:42:1477:49:1756:-130.93,0,-105.829	0/1:72:35,37:35:1228:37:1315:-96.9769,0,-89.1469	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:286:0,285:0:0:285:10148:-912.938,-85.7936,0	0/1:211:100,111:100:3572:111:3968:-293.786,0,-258.171	0/1:70:35,35:35:1241:35:1229:-89.8385,0,-90.9204	0/1:96:47,49:47:1653:49:1748:-128.705,0,-120.157	1/1:152:0,152:0:0:152:5417:-487.661,-45.7566,0	1/1:107:0,107:0:0:107:3767:-339.229,-32.2102,0	0/1:11:6,5:6:212:5:176:-12.8737,0,-16.1135	1/1:93:0,93:0:0:93:3311:-298.209,-27.9958,0	1/1:47:0,47:0:0:47:1679:-151.396,-14.1484,0	0/1:12:3,9:3:108:9:320:-25.53,0,-6.46281	1/1:154:0,154:0:0:154:5394:-485.601,-46.3586,0	0/1:44:22,22:22:760:22:780:-57.2743,0,-55.4706	0/1:152:95,57:95:3395:57:2031:-137.304,0,-260.008	1/1:208:0,208:0:0:208:7410:-666.949,-62.6142,0	0/1:130:73,57:73:2562:57:2017:-142.667,0,-191.697	1/1:108:1,107:1:36:107:3813:-339.769,-28.913,0	0/1:14:11,3:11:392:3:108:-5.86075,0,-31.4056	0/1:140:75,65:75:2636:65:2324:-167.276,0,-195.343	0/1:164:82,82:82:2868:82:2892:-211.148,0,-208.987	1/1:229:0,229:0:0:229:8180:-736.216,-68.9359,0	0/1:110:52,58:52:1842:58:2062:-152.737,0,-132.946	0/1:55:29,26:29:1022:26:924:-66.921,0,-75.7342	1/1:81:0,81:0:0:81:2884:-259.791,-24.3834,0	1/1:105:1,104:1:36:104:3680:-327.807,-28.0099,0	0/1:44:15,29:15:532:29:1044:-81.0295,0,-34.9678	0/1:68:33,35:33:1167:35:1239:-91.3436,0,-84.8664	0/1:52:27,25:27:941:25:882:-64.043,0,-69.3481	0/1:29:6,23:6:212:23:819:-65.3025,0,-10.6949	0/1:57:26,31:26:899:31:1096:-81.789,0,-64.0644	0/1:54:35,19:35:1248:19:680:-45.2735,0,-96.3692	1/1:101:0,101:0:0:101:3546:-319.349,-30.404,0	1/1:93:0,93:0:0:93:3316:-298.658,-27.9958,0
chr11	31635724	.	G	A	21903.6	PASS	AB=0.486147;ABP=7.5225;AC=46;AF=0.25;AN=184;AO=1320;CIGAR=1X;DP=5666;DPB=5666;DPRA=0.95941;EPP=2860.67;EPPR=9370.87;GTI=1;LEN=1;MEANALT=1;MQM=59.9023;MQMR=59.9848;NS=92;NUMALT=1;ODDS=0.872175;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47294;QR=155376;RO=4346;RPL=1319;RPP=2860.67;RPPR=9370.87;RPR=1;RUN=1;SAF=0;SAP=2869.35;SAR=1320;SRF=0;SRP=9440.23;SRR=4346;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:81:45,36:45:1616:36:1280:-91.1125,0,-121.347	0/1:66:30,36:30:1068:36:1296:-97.076,0,-76.5641	0/1:69:49,20:49:1760:20:716:-43.9966,0,-137.913	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/1:67:27,40:27:972:40:1440:-109.673,0,-67.6289	0/0:158:158,0:158:5651:0:0:0,-47.5627,-508.71	0/1:97:52,45:52:1829:45:1620:-116.89,0,-135.689	0/1:60:24,36:24:860:36:1272:-96.7195,0,-59.66	0/0:73:72,1:72:2568:1:36:0,-18.3769,-227.77	0/1:41:20,21:20:716:21:756:-56.025,0,-52.4255	0/0:56:56,0:56:1994:0:0:0,-16.8577,-179.733	0/1:82:44,38:44:1571:38:1359:-97.9254,0,-116.996	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.405	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.779	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/1:48:28,20:28:1008:20:720:-50.6793,0,-76.5869	0/1:60:25,35:25:896:35:1260:-95.6437,0,-62.8986	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:107:107,0:107:3815:0:0:0,-32.2102,-343.548	0/1:104:51,53:51:1820:53:1870:-137.27,0,-132.774	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/1:31:14,17:14:500:17:612:-46.0815,0,-36.0042	0/0:47:46,1:46:1639:1:36:0,-10.5501,-144.2	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/1:190:89,101:89:3191:101:3609:-267.814,0,-230.215	0/1:123:63,60:63:2256:60:2160:-157.64,0,-166.276	0/1:25:16,9:16:576:9:324:-21.9801,0,-44.6492	0/1:112:63,49:63:2256:49:1760:-124.969,0,-169.588	0/0:90:90,0:90:3224:0:0:0,-27.0927,-290.382	0/0:91:91,0:91:3264:0:0:0,-27.3937,-293.98	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:214:214,0:214:7655:0:0:0,-64.4204,-688.668	0/0:137:137,0:137:4882:0:0:0,-41.2411,-439.534	0/1:44:22,22:22:784:22:792:-58.3604,0,-57.6386	.:.:.:.:.:.:.:.	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9907	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/0:69:69,0:69:2441:0:0:0,-20.7711,-219.944	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.711	0/1:74:48,26:48:1703:26:936:-62.2832,0,-131.279	0/0:84:84,0:84:3004:0:0:0,-25.2865,-270.592	0/1:86:34,52:34:1216:52:1864:-142.116,0,-83.858	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	.:.:.:.:.:.:.:.	0/1:107:44,63:44:1560:63:2268:-172.172,0,-108.481	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:44:44,0:44:1565:0:0:0,-13.2453,-141.14	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:39:23,16:23:816:16:572:-40.0729,0,-62.0215	0/1:94:50,44:50:1796:44:1576:-113.833,0,-133.626	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1806	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/1:89:47,42:47:1662:42:1508:-109.222,0,-123.074	0/1:34:20,14:20:716:14:496:-34.7388,0,-54.5327	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/0:93:93,0:93:3314:0:0:0,-27.9958,-298.478	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/1:13:5,8:5:171:8:288:-22.354,0,-11.8121	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:75:75,0:75:2683:0:0:0,-22.5772,-241.714	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.609	0/1:27:20,7:20:716:7:252:-14.9011,0,-56.6399	0/1:109:49,60:49:1748:60:2152:-161.135,0,-124.79	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:85:49,36:49:1751:36:1273:-89.2825,0,-132.286	0/0:54:53,1:53:1904:1:36:0,-12.6573,-168.039	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:51:30,21:30:1080:21:756:-53.0147,0,-82.1607	0/1:43:23,20:23:820:20:720:-52.1845,0,-61.1782	0/0:129:129,0:129:4609:0:0:0,-38.8329,-414.973	0/1:74:44,30:44:1572:30:1080:-75.2261,0,-119.495	0/1:35:16,19:16:572:19:680:-50.9899,0,-41.2774	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:140:139,1:139:4974:1:36:0,-38.5459,-444.209	0/1:36:18,18:18:648:18:644:-47.4535,0,-47.8148	0/1:78:42,36:42:1496:36:1296:-93.4636,0,-111.454	0/1:63:31,32:31:1112:32:1148:-84.6649,0,-81.4265	0/1:27:14,13:14:504:13:468:-34.3318,0,-37.5703	0/1:63:38,25:38:1360:25:892:-61.606,0,-103.736	0/1:57:21,36:21:748:36:1275:-97.8914,0,-50.4866	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.776
chr11	31635798	.	G	C	136890	PASS	AB=0.463081;ABP=62.6564;AC=140;AF=0.744681;AN=188;AO=7034;CIGAR=1X;DP=9752;DPB=9752;DPRA=0;EPP=15277.1;EPPR=5896.39;GTI=3;LEN=1;MEANALT=1.04255;MQM=41.5036;MQMR=53.2841;NS=94;NUMALT=1;ODDS=1.75345;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=248938;QR=96460;RO=2714;RPL=7034;RPP=15277.1;RPPR=5896.39;RPR=0;RUN=1;SAF=7034;SAP=15277.1;SAR=0;SRF=2714;SRP=5896.39;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1317:-113.59,-11.4391,0	0/1:164:86,78:86:3069:78:2767:-186.824,0,-225.421	0/1:117:62,55:62:2207:55:1956:-131.689,0,-162.845	0/1:267:142,125:142:5023:125:4453:-306.728,0,-370.011	0/1:103:52,51:52:1847:51:1812:-124.891,0,-135.165	0/1:60:36,24:36:1292:24:836:-53.8452,0,-98.1546	1/1:91:0,91:0:0:91:3217:-280.215,-27.3937,0	0/1:175:97,78:97:3476:78:2774:-184.624,0,-258.09	0/1:121:82,39:82:2923:39:1400:-81.965,0,-224.555	1/1:58:0,58:0:0:58:2027:-176.906,-17.4597,0	0/1:39:19,20:19:680:20:694:-48.5832,0,-49.6336	1/1:67:0,67:0:0:67:2357:-202.217,-20.169,0	0/1:58:31,27:31:1099:27:942:-62.8925,0,-81.5233	1/1:65:0,65:0:0:65:2286:-197.283,-19.567,0	1/1:54:0,54:0:0:54:1895:-166.423,-16.2556,0	1/1:52:0,52:0:0:52:1808:-156.947,-15.6536,0	0/1:67:29,38:29:1032:38:1360:-95.2608,0,-72.7798	0/1:44:26,18:26:904:18:644:-42.2854,0,-67.227	1/1:31:0,31:0:0:31:1090:-93.4888,-9.33193,0	1/1:203:0,203:0:0:203:7241:-632.798,-61.1091,0	0/1:209:118,91:118:4167:91:3255:-218.096,0,-310.162	1/1:146:0,146:0:0:146:5164:-456.73,-43.9504,0	0/1:139:85,54:85:3015:54:1912:-125.392,0,-228.919	0/1:122:13,109:13:440:109:3864:-295.091,0,-2.90126	1/1:67:0,67:0:0:67:2346:-203.952,-20.169,0	0/1:380:221,159:221:7877:159:5631:-383.777,0,-593.715	0/1:184:101,83:101:3615:83:2946:-200.212,0,-269.023	0/1:22:15,7:15:524:7:248:-15.3501,0,-40.794	0/1:296:137,159:137:4887:159:5640:-409.01,0,-350.548	1/1:241:4,237:4:144:237:8395:-707.384,-59.2535,0	1/1:133:4,129:4:144:129:4552:-386.408,-26.733,0	0/1:4:2,2:2:72:2:68:-4.85669,0,-5.62291	0/1:15:7,8:7:252:8:288:-19.9253,0,-18.4809	1/1:1:0,1:0:0:1:36:-3.4236,-0.30103,0	0/1:9:7,2:7:243:2:68:-3.33957,0,-19.438	1/1:4:0,4:0:0:4:144:-12.6673,-1.20412,0	1/1:169:0,169:0:0:169:6008:-531.534,-50.8741,0	1/1:224:0,224:0:0:224:7893:-675.774,-67.4307,0	0/1:41:23,18:23:808:18:644:-42.9577,0,-60.3844	1/1:1:0,1:0:0:1:36:-3.4807,-0.30103,0	0/1:198:114,84:114:4043:84:2988:-195.933,0,-302.476	1/1:19:0,19:0:0:19:680:-59.4639,-5.71957,0	1/1:161:0,161:0:0:161:5712:-494.652,-48.4658,0	1/1:57:0,57:0:0:57:2009:-177.154,-17.1587,0	1/1:62:0,62:0:0:62:2162:-187.756,-18.6639,0	1/1:102:0,102:0:0:102:3614:-319.761,-30.7051,0	0/1:171:91,80:91:3251:80:2827:-189.032,0,-238.911	1/1:185:0,185:0:0:185:6525:-569.301,-55.6906,0	0/1:134:74,60:74:2640:60:2148:-147.391,0,-196.226	1/1:206:0,206:0:0:206:7319:-638.109,-62.0122,0	1/1:174:0,174:0:0:174:6190:-546.097,-52.3792,0	1/1:5:0,5:0:0:5:180:-16.1966,-1.50515,0	0/1:129:67,62:67:2383:62:2202:-150.256,0,-175.164	1/1:35:0,35:0:0:35:1229:-109.147,-10.5361,0	1/1:22:0,22:0:0:22:788:-67.2342,-6.62266,0	1/1:120:0,120:0:0:120:4238:-365.482,-36.1236,0	1/1:40:0,40:0:0:40:1405:-123.538,-12.0412,0	0/1:4:3,1:3:104:1:36:-2.3444,0,-8.48316	1/1:11:0,11:0:0:11:374:-33.5962,-3.31133,0	0/1:72:41,31:41:1449:31:1100:-72.5426,0,-108.345	0/1:102:49,53:49:1737:53:1894:-133.954,0,-125.655	1/1:5:0,5:0:0:5:176:-15.8708,-1.50515,0	1/1:315:0,315:0:0:315:11160:-986.928,-94.8245,0	0/1:230:116,114:116:4116:114:4048:-284.055,0,-300.392	0/1:61:42,19:42:1499:19:666:-40.0093,0,-115.76	0/1:92:45,47:45:1601:47:1665:-118.793,0,-116.454	1/1:184:0,184:0:0:184:6541:-570.188,-55.3895,0	1/1:121:2,119:2:72:119:4204:-363.254,-29.5928,0	0/1:8:6,2:6:197:2:72:-4.15084,0,-15.5156	1/1:65:0,65:0:0:65:2282:-195.864,-19.567,0	1/1:77:0,77:0:0:77:2729:-242.056,-23.1793,0	0/1:24:11,13:11:381:13:464:-33.0916,0,-26.8803	1/1:106:0,106:0:0:106:3727:-317.113,-31.9092,0	0/1:54:17,37:17:608:37:1324:-96.6958,0,-38.6287	0/1:251:154,97:154:5494:97:3446:-221.209,0,-415.776	1/1:203:0,203:0:0:203:7227:-632.631,-61.1091,0	0/1:150:82,67:82:2940:67:2354:-154.482,0,-218.663	1/1:131:1,129:1:36:129:4603:-388.784,-35.8914,0	0/1:20:11,9:11:396:9:324:-21.7167,0,-29.8622	0/1:133:74,59:74:2627:59:2103:-142.051,0,-195.178	0/1:165:99,66:99:3507:66:2322:-147.759,0,-264.783	1/1:219:0,219:0:0:219:7748:-676.191,-65.9256,0	0/1:87:43,44:43:1508:44:1550:-109.588,0,-109.37	0/1:31:17,14:17:604:14:491:-33.8316,0,-44.6855	1/1:99:0,99:0:0:99:3471:-305.216,-29.802,0	1/1:146:0,146:0:0:146:5150:-450.24,-43.9504,0	0/1:44:22,22:22:779:22:766:-52.7746,0,-57.0165	0/1:59:28,31:28:983:31:1069:-73.0865,0,-70.7939	0/1:56:26,29:26:920:29:1023:-70.4784,0,-65.9506	0/1:19:12,7:12:428:7:252:-16.5569,0,-33.07	0/1:54:32,22:32:1144:22:784:-51.8191,0,-86.8098	0/1:54:36,18:36:1273:18:602:-37.2307,0,-98.387	1/1:139:0,139:0:0:139:4901:-426.786,-41.8432,0	1/1:60:0,59:0:0:59:2060:-180.604,-17.7608,0
chr11	31659155	.	A	C	8683.83	PASS	AB=0.376842;ABP=441.067;AC=47;AF=0.252688;AN=186;AO=1280;CIGAR=1X;DP=7443;DPB=7443;DPRA=0.954455;EPP=2782.49;EPPR=13374.9;GTI=7;LEN=1;MEANALT=1.06122;MQM=27.9633;MQMR=54.8923;NS=93;NUMALT=1;ODDS=0.224002;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=45623;QR=220507;RO=6158;RPL=1280;RPP=2782.49;RPPR=13374.9;RPR=0;RUN=1;SAF=0;SAP=2782.49;SAR=1280;SRF=0;SRP=13374.9;SRR=6158;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.1844	0/1:102:67,34:67:2400:34:1201:-52.5313,0,-184.158	0/1:88:45,43:45:1620:43:1531:-79.2654,0,-119.379	0/1:111:66,45:66:2357:45:1604:-78.2555,0,-177.655	0/1:34:16,18:16:568:18:644:-33.8771,0,-40.8685	0/1:27:23,4:23:824:4:140:-1.92071,0,-65.7028	0/0:130:130,0:130:4660:0:0:0,-39.1339,-418.692	0/1:111:81,30:81:2896:30:1068:-40.5158,0,-226.883	0/1:75:54,21:54:1944:21:737:-28.6902,0,-152.226	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.472	0/1:29:12,17:12:432:17:600:-33.186,0,-30.4608	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.329	0/1:58:40,18:40:1440:18:648:-27.1404,0,-112.218	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.383	0/0:81:81,0:81:2916:0:0:0,-24.3834,-261.549	0/0:50:50,0:50:1778:0:0:0,-15.0515,-158.918	0/1:52:34,18:34:1216:18:648:-28.9465,0,-93.8062	0/1:67:41,26:41:1464:26:932:-44.058,0,-111.644	0/0:37:37,0:37:1332:0:0:0,-11.1381,-119.778	0/0:169:169,0:169:6048:0:0:0,-50.8741,-543.305	0/1:111:75,36:75:2688:36:1292:-54.9524,0,-208.43	0/0:72:72,0:72:2560:0:0:0,-21.6742,-229.964	0/1:53:34,19:34:1220:19:676:-31.6344,0,-94.0739	0/0:129:114,15:114:4081:15:540:0,-1.62052,-329.654	0/0:99:99,0:99:3529:0:0:0,-29.802,-317.242	0/1:233:155,78:155:5549:78:2781:-120.374,0,-427.417	0/1:172:117,55:117:4200:55:1949:-82.9998,0,-324.844	0/1:36:16,20:16:576:20:708:-38.4668,0,-41.1961	0/1:178:105,73:105:3760:73:2620:-124.466,0,-283.891	0/0:123:121,2:121:4313:2:68:0,-31.9054,-380.348	0/0:74:74,0:74:2648:0:0:0,-22.2762,-237.133	1/1:2:0,2:0:0:2:72:-5.19878,-0.60206,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5401	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59568	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59568	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.304	0/0:225:225,0:225:8056:0:0:0,-67.7317,-722.38	0/0:136:136,0:136:4853:0:0:0,-40.9401,-434.298	0/1:46:30,16:30:1080:16:568:-25.6797,0,-83.4894	.:.:.:.:.:.:.:.	0/1:144:90,54:90:3232:54:1932:-89.6841,0,-247.234	0/0:22:22,0:22:788:0:0:0,-6.62266,-70.8825	0/0:96:96,0:96:3452:0:0:0,-28.8989,-310.344	0/0:81:81,0:81:2896:0:0:0,-24.3834,-259.314	0/0:71:70,0:70:2504:0:0:0,-21.0721,-224.577	0/0:69:69,0:69:2476:0:0:0,-20.7711,-222.71	0/1:102:56,46:56:2012:46:1648:-82.6336,0,-149.889	0/0:169:169,0:169:6033:0:0:0,-50.8741,-540.087	0/1:82:44,38:44:1572:38:1360:-68.3642,0,-116.292	0/0:120:120,0:120:4295:0:0:0,-36.1236,-385.49	0/0:177:177,0:177:6329:0:0:0,-53.2823,-566.388	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83179	0/1:90:48,42:48:1728:42:1500:-76.3886,0,-128.445	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7053	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.6708	0/0:121:121,0:121:4332:0:0:0,-36.4246,-387.935	0/0:45:45,0:45:1616:0:0:0,-13.5463,-144.995	1/1:6:0,6:0:0:6:216:-15.0491,-1.80618,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2369	0/1:25:17,8:17:612:8:284:-12.3741,0,-47.6394	0/1:95:57,38:57:2044:38:1348:-64.473,0,-155.503	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8858	0/0:257:256,0:256:9152:0:0:0,-77.0637,-820.02	0/1:272:182,89:182:6501:89:3149:-135.529,0,-500.365	0/1:47:35,12:35:1260:12:424:-15.2039,0,-99.0598	0/1:53:23,30:23:812:30:1072:-57.9825,0,-57.1451	0/0:122:122,0:122:4380:0:0:0,-36.7257,-392.171	0/0:90:90,0:90:3224:0:0:0,-27.0927,-289.696	0/1:15:10,5:10:360:5:180:-8.07108,0,-28.203	0/0:55:55,0:55:1976:0:0:0,-16.5566,-177.567	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.147	0/1:18:15,3:15:528:3:108:-2.24283,0,-42.2975	0/0:121:121,0:121:4328:0:0:0,-36.4246,-388.697	0/1:49:33,16:33:1180:16:576:-24.8451,0,-91.5792	0/1:80:47,33:47:1672:33:1176:-56.9923,0,-125.914	0/0:143:143,0:143:5124:0:0:0,-43.0473,-459.276	0/1:61:31,30:31:1112:30:1076:-55.7146,0,-81.1804	0/0:87:86,1:86:3088:1:36:0,-23.4534,-275.109	0/1:17:11,6:11:392:6:216:-9.9316,0,-30.3283	0/1:86:52,34:52:1860:34:1205:-56.9076,0,-140.542	0/1:92:47,45:47:1680:45:1612:-83.1813,0,-123.168	0/0:182:182,0:182:6512:0:0:0,-54.7875,-584.729	0/1:83:54,29:54:1931:29:1027:-46.2939,0,-148.603	0/1:50:33,17:33:1180:17:612:-27.086,0,-91.2792	0/0:95:95,0:95:3420:0:0:0,-28.5978,-306.694	0/0:163:161,1:161:5753:1:36:0,-46.3415,-513.613	0/1:46:26,20:26:936:20:716:-35.5248,0,-70.4432	0/1:55:33,22:33:1184:22:783:-37.6317,0,-89.5525	0/1:62:41,21:41:1472:21:744:-33.1026,0,-113.34	0/1:19:14,5:14:504:5:176:-6.79194,0,-39.9456	0/1:39:28,11:28:1008:11:392:-15.2233,0,-78.6595	0/1:60:32,28:32:1148:28:992:-50.8694,0,-85.3457	0/0:73:73,0:73:2624:0:0:0,-21.9752,-235.707	0/0:118:118,0:118:4232:0:0:0,-35.5215,-379.42
chr11	31659199	.	A	C	49101.7	PASS	AB=0.505768;ABP=4.61346;AC=48;AF=0.255319;AN=188;AO=2819;CIGAR=1X;DP=10805;DPB=10805;DPRA=1.11972;EPP=5781.89;EPPR=16596.8;GTI=0;LEN=1;MEANALT=1.03704;MQM=59.9947;MQMR=59.9917;NS=94;NUMALT=1;ODDS=1.8701;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=100401;QR=285176;RO=7982;RPL=40;RPP=5781.89;RPPR=16605.3;RPR=2779;RUN=1;SAF=2819;SAP=6124.39;SAR=0;SRF=7981;SRP=17327;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:877:0:0:0,-7.52575,-79.2452	0/1:219:105,114:105:3740:114:4056:-299.304,0,-270.859	0/1:208:124,84:124:4421:84:2994:-207.077,0,-335.448	0/1:222:99,123:99:3521:123:4383:-327.816,0,-250.271	0/1:87:25,62:25:900:62:2216:-173.515,0,-55.1314	0/1:34:11,23:11:381:23:809:-62.8933,0,-24.3856	0/0:108:108,0:108:3876:0:0:0,-32.5112,-349.034	0/1:189:110,79:110:3933:79:2791:-194.535,0,-297.266	0/1:108:55,53:55:1976:53:1892:-138.047,0,-145.603	0/0:136:136,0:136:4880:0:0:0,-40.9401,-439.351	0/1:83:46,37:46:1648:37:1325:-94.5667,0,-123.623	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/1:75:37,38:37:1332:38:1368:-100.844,0,-97.6051	0/0:117:117,0:117:4192:0:0:0,-35.2205,-377.461	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/1:58:32,26:32:1148:26:936:-67.0997,0,-86.1701	0/1:53:37,16:37:1323:16:576:-36.2204,0,-103.417	0/0:53:53,0:53:1889:0:0:0,-15.9546,-170.286	0/0:196:194,1:194:6899:1:36:0,-55.3875,-617.454	0/1:164:81,83:81:2912:83:2954:-216.724,0,-212.946	0/0:254:253,1:253:9027:1:36:0,-72.8633,-808.808	0/1:48:22,26:22:784:26:913:-68.0331,0,-56.4335	0/1:82:71,11:71:2544:11:392:-10.9356,0,-204.526	0/0:117:117,0:117:4180:0:0:0,-35.2205,-376.383	0/1:404:200,204:200:7118:204:7302:-535.613,0,-519.064	0/1:265:109,156:109:3896:156:5526:-417.696,0,-271.062	0/1:37:19,18:19:680:18:648:-47.5138,0,-50.3911	0/1:368:178,190:178:6340:190:6744:-496.26,0,-459.908	0/0:175:167,8:167:5981:8:288:0,-26.4128,-512.127	0/0:155:155,0:155:5540:0:0:0,-46.6596,-498.726	0/1:38:22,16:22:792:16:568:-40.0127,0,-60.1665	0/1:54:35,19:35:1248:19:676:-44.9124,0,-96.3692	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:24:10,14:10:356:14:500:-38.1115,0,-25.1565	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:176:176,0:176:6297:0:0:0,-52.9813,-566.821	0/0:247:247,0:247:8784:0:0:0,-74.3544,-790.549	0/1:76:43,33:43:1540:33:1188:-84.3503,0,-116.015	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:138:61,77:61:2184:77:2727:-204.129,0,-155.284	0/0:52:52,0:52:1826:0:0:0,-15.6536,-164.617	0/0:170:170,0:170:6104:0:0:0,-51.1751,-549.459	0/0:51:51,0:51:1798:0:0:0,-15.3525,-162.098	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:115:115,0:115:4117:0:0:0,-34.6184,-370.713	0/1:142:63,79:63:2268:79:2840:-213.091,0,-161.636	0/0:243:243,0:243:8719:0:0:0,-73.1503,-784.697	0/1:151:68,83:68:2436:83:2976:-222.617,0,-174.04	0/0:136:135,0:135:4837:0:0:0,-40.639,-435.122	0/0:178:178,0:178:6362:0:0:0,-53.5833,-572.668	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:176:83,93:83:2968:93:3299:-244.147,0,-214.372	0/0:59:59,0:59:2093:0:0:0,-17.7608,-188.638	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:116:115,1:115:4120:1:36:0,-31.3212,-367.386	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:31:16,15:16:572:15:540:-39.6046,0,-42.4815	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:78:38,40:38:1360:40:1418:-104.435,0,-99.2203	0/1:114:57,57:57:2043:57:2012:-147.034,0,-149.824	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:229:229,0:229:8185:0:0:0,-68.9359,-736.608	0/1:212:98,114:98:3509:114:4043:-300.243,0,-252.2	0/1:58:25,33:25:884:33:1180:-89.0483,0,-62.4186	0/1:121:73,48:73:2612:48:1709:-117.67,0,-198.903	0/0:234:233,0:233:8329:0:0:0,-70.14,-749.258	0/0:90:90,0:90:3232:0:0:0,-27.0927,-291.101	0/1:28:15,13:15:540:13:468:-34.0308,0,-40.5077	0/0:114:114,0:114:4073:0:0:0,-34.3174,-366.755	0/0:102:101,1:101:3608:1:36:0,-27.1068,-321.329	0/1:60:27,33:27:964:33:1184:-88.8065,0,-69.015	0/0:152:152,0:152:5444:0:0:0,-45.7566,-490.089	0/1:65:33,32:33:1188:32:1143:-83.6117,0,-87.6535	0/1:181:69,112:69:2453:112:3949:-301.117,0,-166.532	0/0:218:218,0:218:7815:0:0:0,-65.6245,-703.377	0/1:185:101,84:101:3605:84:2992:-213.823,0,-268.965	0/0:112:111,1:111:3934:1:36:0,-30.1171,-350.654	0/1:34:14,20:14:500:20:720:-54.8938,0,-35.1012	0/1:152:69,83:69:2476:83:2950:-219.977,0,-177.337	0/1:134:66,68:66:2353:68:2431:-178.707,0,-171.689	0/0:229:229,0:229:8160:0:0:0,-68.9359,-734.326	0/1:86:45,41:45:1604:41:1468:-106.528,0,-118.762	0/1:51:33,18:33:1165:18:636:-42.2149,0,-89.8025	0/0:67:67,0:67:2381:0:0:0,-20.169,-214.546	0/0:109:109,0:109:3881:0:0:0,-32.8123,-349.485	0/1:30:18,12:18:644:12:428:-29.8279,0,-49.2597	0/1:68:32,36:32:1152:36:1287:-95.6628,0,-83.5201	0/1:69:29,40:29:1044:40:1412:-106.603,0,-73.5037	0/1:78:37,41:37:1324:41:1476:-109.656,0,-95.9818	0/1:154:84,69:84:2989:69:2460:-175.237,0,-222.824	0/1:56:16,40:16:527:40:1428:-111.96,0,-30.8822	0/0:132:132,0:132:4713:0:0:0,-39.736,-424.329	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387
chr11	31722351	.	C	T	100231	PASS	AB=0.406081;ABP=300.359;AC=142;AF=0.755319;AN=188;AO=4923;CIGAR=1X;DP=7253;DPB=7253;DPRA=25.9857;EPP=10693.2;EPPR=4947.69;GTI=6;LEN=1;MEANALT=1.12903;MQM=59.5696;MQMR=39.2689;NS=94;NUMALT=1;ODDS=0.417222;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=175253;QR=82762;RO=2309;RPL=4923;RPP=10693.2;RPPR=4947.69;RPR=0;RUN=1;SAF=4923;SAP=10693.2;SAR=0;SRF=2309;SRP=5016.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27:0:0:27:956:-86.3557,-8.12781,0	0/1:135:63,72:63:2260:72:2564:-190.342,0,-142.506	0/1:142:75,67:75:2684:67:2380:-171.683,0,-179.677	0/1:166:121,45:121:4336:45:1589:-93.2944,0,-324.952	0/1:66:38,28:38:1360:28:1004:-70.8079,0,-96.8396	0/1:39:19,20:19:680:20:699:-51.4919,0,-46.225	1/1:105:0,105:0:0:105:3764:-338.91,-31.6082,0	0/1:162:92,70:92:3304:70:2500:-176.458,0,-227.379	0/1:38:22,16:22:779:16:572:-40.3628,0,-53.9814	1/1:86:0,85:0:0:85:3027:-272.33,-25.5876,0	0/1:68:45,23:45:1620:23:812:-52.9263,0,-119.965	1/1:48:0,48:0:0:48:1712:-154.362,-14.4494,0	0/1:51:29,21:29:1044:21:756:-52.9395,0,-71.127	1/1:49:0,49:0:0:49:1755:-158.209,-14.7505,0	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	1/1:39:0,39:0:0:39:1395:-125.84,-11.7402,0	0/1:67:44,22:44:1580:22:788:-51.0552,0,-112.196	0/1:62:41,21:41:1472:21:748:-48.9699,0,-103.62	1/1:26:0,26:0:0:26:928:-83.8316,-7.82678,0	1/1:156:0,156:0:0:156:5506:-495.234,-46.9607,0	0/1:78:42,35:42:1508:35:1234:-87.8497,0,-107.438	1/1:95:0,95:0:0:95:3349:-301.604,-28.5979,0	0/1:24:16,8:16:572:8:278:-18.1292,0,-43.2526	1/1:76:5,71:5:180:71:2548:-214.626,-8.06434,0	1/1:42:0,42:0:0:42:1508:-135.994,-12.6433,0	0/1:252:114,138:114:4088:138:4917:-366.444,0,-281.074	0/1:204:107,97:107:3816:97:3427:-246.857,0,-264.743	0/1:37:26,11:26:932:11:396:-24.84,0,-67.5583	0/1:244:135,109:135:4820:109:3858:-273.939,0,-344.718	1/1:122:7,115:7:252:115:4106:-347.595,-14.6169,0	1/1:91:0,91:0:0:91:3240:-291.803,-27.3937,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.00217	0/1:11:9,2:9:324:2:72:-3.52539,0,-25.0155	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-17.7567	1/1:3:0,3:0:0:3:108:-10.0667,-0.90309,0	1/1:154:0,154:0:0:154:5464:-491.868,-46.3586,0	1/1:169:1,168:1:36:168:5975:-534.179,-47.2758,0	0/1:67:38,27:38:1368:27:955:-66.3303,0,-95.3581	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:109:48,61:48:1720:61:2184:-164.002,0,-113.994	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	1/1:81:0,81:0:0:81:2880:-259.422,-24.3834,0	1/1:41:0,41:0:0:41:1468:-132.409,-12.3422,0	1/1:38:0,38:0:0:38:1350:-121.757,-11.4391,0	1/1:58:0,58:0:0:58:2071:-186.58,-17.4597,0	0/1:107:72,35:72:2584:35:1243:-79.9518,0,-181.603	1/1:121:0,121:0:0:121:4290:-386.16,-36.4246,0	0/1:88:42,46:42:1504:46:1652:-122.475,0,-103.953	1/1:109:0,109:0:0:109:3887:-350.019,-32.8123,0	1/1:119:0,119:0:0:119:4254:-383.001,-35.8226,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:169:112,57:112:4024:57:2052:-134.077,0,-284.406	1/1:23:0,23:0:0:23:824:-74.4709,-6.92369,0	1/1:12:0,12:0:0:12:420:-38.0463,-3.61236,0	1/1:81:0,81:0:0:81:2856:-257.215,-24.3834,0	1/1:21:0,21:0:0:21:747:-67.5509,-6.32163,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.40762	1/1:8:0,8:0:0:8:288:-26.2324,-2.40824,0	0/1:49:23,26:23:824:26:932:-69.3785,0,-56.815	0/1:111:58,52:58:2088:52:1860:-134.204,0,-145.898	1/1:10:0,10:0:0:10:360:-32.6527,-3.0103,0	1/1:155:1,154:1:36:154:5494:-491.02,-43.1235,0	0/1:137:74,63:74:2664:63:2240:-160.602,0,-188.848	0/1:81:59,22:59:2116:22:774:-45.5968,0,-154.715	0/1:69:48,21:48:1728:21:752:-47.2352,0,-129.182	1/1:118:4,114:4:144:114:4044:-351.075,-22.4731,0	1/1:117:1,116:1:36:116:4145:-370.167,-32.166,0	0/1:39:29,10:29:1040:10:352:-20.278,0,-75.5923	1/1:63:0,63:0:0:63:2264:-203.859,-18.9649,0	1/1:74:0,74:0:0:74:2648:-238.529,-22.2762,0	0/1:15:5,10:5:180:10:360:-28.2289,0,-11.045	1/1:105:0,105:0:0:105:3683:-331.537,-31.6082,0	0/1:41:22,19:22:792:19:671:-48.3654,0,-54.3212	0/1:131:86,45:86:3084:45:1600:-104.685,0,-218.972	1/1:120:0,120:0:0:120:4258:-383.312,-36.1236,0	0/1:100:60,40:60:2156:40:1436:-99.4347,0,-147.999	1/1:51:0,51:0:0:51:1832:-165.13,-15.3525,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:125:75,50:75:2696:50:1787:-123.479,0,-194.438	0/1:84:53,31:53:1892:31:1112:-75.0851,0,-132.138	1/1:159:1,158:1:36:158:5656:-505.186,-44.3611,0	0/1:89:48,38:48:1728:38:1313:-92.2161,0,-123.823	0/1:66:45,19:45:1607:19:672:-41.1817,0,-121.088	1/1:42:1,41:1:36:41:1459:-128.003,-9.04499,0	1/1:83:0,83:0:0:83:2976:-268.057,-24.9855,0	0/1:32:21,11:21:748:11:396:-26.3498,0,-53.0856	1/1:55:0,55:0:0:55:1954:-176.113,-16.5567,0	0/1:64:41,21:41:1460:21:733:-47.2587,0,-102.794	0/1:61:40,19:40:1432:19:680:-43.4222,0,-104.274	0/1:125:90,33:90:3208:33:1188:-69.8293,0,-237.853	0/1:64:49,12:49:1752:12:432:-20.5179,0,-131.826	1/1:49:0,49:0:0:49:1760:-158.661,-14.7505,0	1/1:65:0,65:0:0:65:2304:-207.614,-19.567,0
chr11	31741322	.	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chr11	31741364	.	T	C	43192.8	PASS	AB=0.495855;ABP=3.78436;AC=46;AF=0.244681;AN=188;AO=2608;CIGAR=1X;DP=10172;DPB=10172;DPRA=1.19857;EPP=5666.21;EPPR=16417.2;GTI=0;LEN=1;MEANALT=1.05455;MQM=59.9647;MQMR=59.9717;NS=94;NUMALT=1;ODDS=6.24816;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=93071;QR=268677;RO=7559;RPL=2608;RPP=5666.21;RPPR=16417.2;RPR=0;RUN=1;SAF=0;SAP=5666.21;SAR=2608;SRF=0;SRP=16417.2;SRR=7559;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/1:186:83,103:83:2918:103:3669:-274.422,0,-206.863	0/1:114:57,57:57:2024:57:2028:-148.475,0,-148.116	0/1:213:118,95:118:4186:95:3378:-240.118,0,-312.802	0/1:99:32,67:32:1148:67:2400:-186.455,0,-73.8279	0/1:83:47,36:47:1684:36:1288:-91.2381,0,-126.862	0/0:137:137,0:137:4872:0:0:0,-41.2411,-438.637	0/1:194:71,123:71:2532:123:4378:-335.739,0,-169.542	0/1:137:63,74:63:2233:74:2625:-195.257,0,-159.992	0/0:152:151,1:151:5289:1:31:0,-42.6571,-473.051	0/1:122:61,61:61:2180:61:2166:-158.48,0,-159.74	0/0:106:106,0:106:3783:0:0:0,-31.9092,-340.666	0/1:91:38,53:38:1356:53:1883:-142.354,0,-94.933	0/0:100:100,0:100:3568:0:0:0,-30.103,-321.329	0/0:93:93,0:93:3324:0:0:0,-27.9958,-299.378	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/1:126:64,62:64:2284:62:2224:-162.494,0,-167.892	0/1:82:38,44:38:1344:44:1563:-116.276,0,-96.5757	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.27	0/0:197:197,0:197:6965:0:0:0,-59.3029,-626.92	0/1:150:55,94:55:1968:94:3344:-255.834,0,-132.182	0/0:78:78,0:78:2758:0:0:0,-23.4803,-248.46	0/1:102:56,46:56:2004:46:1648:-117.903,0,-149.928	0/0:166:152,14:152:5394:14:496:0,-4.99672,-440.619	0/0:77:77,0:77:2722:0:0:0,-23.1793,-245.092	0/1:339:175,164:175:6194:164:5839:-423.575,0,-455.511	0/1:228:108,120:108:3860:120:4281:-316.833,0,-278.961	0/1:36:19,17:19:680:17:612:-44.5764,0,-50.6921	0/1:257:137,120:137:4881:120:4308:-310.531,0,-362.079	0/0:123:117,6:117:4156:6:216:0,-17.2362,-354.433	0/0:101:99,2:99:3484:2:72:0,-23.5673,-306.932	0/1:16:10,6:10:352:6:216:-14.974,0,-27.2017	0/1:26:12,14:12:428:14:504:-37.8713,0,-31.032	0/0:19:19,0:19:668:0:0:0,-5.71957,-60.4457	0/1:27:11,16:11:388:16:568:-43.3235,0,-27.1296	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:313:313,0:313:11193:0:0:0,-94.2224,-1007.26	0/0:112:112,0:112:3958:0:0:0,-33.7154,-356.413	0/1:89:41,47:41:1472:47:1688:-125.356,0,-105.926	0/0:12:12,0:12:415:0:0:0,-3.61236,-37.6803	0/1:157:87,70:87:3086:70:2504:-178.351,0,-230.705	0/0:58:58,0:58:2059:0:0:0,-17.4597,-185.581	0/0:174:174,0:174:6159:0:0:0,-52.3792,-554.412	0/0:115:115,0:115:4073:0:0:0,-34.6184,-366.673	0/0:88:88,0:88:3143:0:0:0,-26.4906,-283.095	0/0:54:54,0:54:1856:0:0:0,-16.2556,-167.312	0/1:114:75,36:75:2650:36:1288:-82.4496,0,-204.971	0/0:194:194,0:194:6886:0:0:0,-58.3998,-619.776	0/1:113:58,55:58:2064:55:1968:-143.376,0,-152.015	0/0:144:143,1:143:5098:1:36:0,-39.75,-455.359	0/0:136:136,0:136:4848:0:0:0,-40.9401,-436.476	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5583	0/1:120:62,58:62:2185:58:2080:-151.347,0,-160.791	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/0:89:89,0:89:3172:0:0:0,-26.7917,-285.683	0/0:69:68,1:68:2432:1:36:0,-17.1728,-215.537	0/1:21:11,10:11:396:10:356:-26.0596,0,-29.6611	0/0:15:15,0:15:510:0:0:0,-4.51545,-46.2196	0/1:94:25,69:25:873:69:2476:-194.797,0,-50.5877	0/1:136:69,67:69:2455:67:2404:-175.676,0,-180.264	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:164:164,0:164:5826:0:0:0,-49.3689,-524.452	0/1:180:102,78:102:3629:78:2784:-196.245,0,-272.63	0/1:118:64,54:64:2261:54:1914:-137.014,0,-168.23	0/1:107:67,40:67:2365:40:1432:-96.9674,0,-180.898	0/0:133:133,0:133:4729:0:0:0,-40.037,-425.771	0/0:144:135,9:135:4804:9:314:0,-14.7524,-403.919	0/1:50:25,25:25:888:25:887:-65.0958,0,-65.1002	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.902	0/1:26:16,10:16:576:10:356:-24.5545,0,-44.3482	0/0:40:40,0:40:1409:0:0:0,-12.0412,-127.105	0/1:78:30,48:30:1064:48:1712:-130.885,0,-72.5913	0/1:156:78,78:78:2796:78:2772:-202.761,0,-204.919	0/0:143:143,0:143:5089:0:0:0,-43.0473,-458.155	0/1:145:82,63:82:2894:63:2256:-159.654,0,-217.046	0/0:164:163,1:163:5752:1:36:0,-45.7706,-514.199	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	0/1:131:76,55:76:2720:55:1960:-137.241,0,-205.609	0/1:95:53,42:53:1870:42:1493:-106.066,0,-139.977	0/0:188:188,0:188:6685:0:0:0,-56.5936,-601.731	0/1:127:74,53:74:2644:53:1900:-133.047,0,-199.975	0/1:79:43,36:43:1525:36:1288:-92.4422,0,-113.673	0/0:141:140,1:140:5020:1:36:0,-38.847,-448.347	0/0:168:168,0:168:6019:0:0:0,-50.573,-541.813	0/1:55:32,23:32:1152:23:824:-57.9267,0,-87.4335	0/0:114:114,0:114:4076:0:0:0,-34.3174,-367.027	0/1:88:54,34:54:1932:34:1215:-83.1651,0,-147.666	0/1:56:29,27:29:1032:27:960:-69.8586,0,-76.3358	0/1:112:61,51:61:2164:51:1823:-130.63,0,-161.312	0/1:86:30,56:30:1072:56:1996:-154.025,0,-70.9039	0/0:91:91,0:91:3241:0:0:0,-27.3937,-291.911	0/0:174:174,0:174:6196:0:0:0,-52.3792,-557.705
chr11	31743574	.	T	C	187413	PASS	AB=0.46224;ABP=51.8789;AC=143;AF=0.760638;AN=188;AO=6923;CIGAR=1X;DP=9062;DPB=9062;DPRA=0;EPP=15001.4;EPPR=4641.28;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9507;MQMR=59.9869;NS=94;NUMALT=1;ODDS=5.25661;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246247;QR=76321;RO=2136;RPL=3977;RPP=336.419;RPPR=391.277;RPR=2946;RUN=1;SAF=3979;SAP=339.011;SAR=2944;SRF=1377;SRP=391.277;SRR=759;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:106:56,50:56:2003:50:1750:-125.866,0,-148.634	0/1:90:54,36:54:1935:36:1283:-88.6799,0,-147.333	0/1:301:174,127:174:6224:127:4507:-315.186,0,-469.561	0/1:38:22,16:22:792:16:572:-40.3743,0,-60.1665	0/1:33:10,23:10:360:23:806:-62.9242,0,-22.8103	1/1:246:0,246:0:0:246:8760:-788.395,-74.0534,0	0/1:80:47,33:47:1688:33:1171:-81.6109,0,-128.125	0/1:90:32,58:32:1137:58:2062:-158.744,0,-75.5443	1/1:137:0,136:0:0:136:4868:-437.896,-40.9401,0	0/1:73:45,28:45:1608:28:995:-67.8888,0,-123.035	1/1:34:1,33:1:27:33:1165:-102.455,-7.53524,0	0/1:38:17,21:17:604:21:756:-56.9281,0,-43.2515	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:94:0,94:0:0:94:3350:-301.718,-28.2968,0	1/1:35:0,35:0:0:35:1246:-112.444,-10.5361,0	0/1:45:22,23:22:780:23:820:-60.5762,0,-56.9767	0/1:23:17,6:17:603:6:212:-12.5011,0,-47.6758	1/1:30:0,30:0:0:30:1047:-94.537,-9.0309,0	1/1:307:0,307:0:0:307:10911:-981.861,-92.4162,0	0/1:110:64,46:64:2292:46:1656:-116.207,0,-173.428	1/1:84:0,84:0:0:84:3000:-270.232,-25.2865,0	0/1:122:65,57:65:2328:57:2045:-147.51,0,-173.054	1/1:58:2,56:2:68:56:1984:-172.374,-11.002,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:369:192,177:192:6829:177:6273:-453.587,0,-503.604	0/1:142:80,62:80:2855:62:2201:-155.604,0,-214.441	0/1:21:12,9:12:432:9:320:-22.8207,0,-32.8996	0/1:393:224,169:224:8007:169:5999:-421.714,0,-602.347	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:149:0,148:0:0:148:5236:-471.012,-44.5524,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:15:7,8:7:248:8:288:-21.752,0,-18.1487	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:3:0,3:0:0:3:95:-8.86337,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:278:0,278:0:0:278:9771:-879.348,-83.6863,0	1/1:91:0,91:0:0:91:3226:-290.563,-27.3937,0	0/1:50:21,29:21:752:29:1014:-76.515,0,-52.9548	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:80:38,42:38:1364:42:1504:-111.572,0,-98.9783	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	1/1:97:0,97:0:0:97:3434:-309.273,-29.1999,0	1/1:118:0,118:0:0:118:4194:-377.643,-35.5215,0	1/1:106:0,106:0:0:106:3777:-340.129,-31.9092,0	1/1:107:0,107:0:0:107:3774:-339.86,-32.2102,0	0/1:70:36,34:36:1292:34:1216:-88.6731,0,-95.5117	1/1:170:2,168:2:72:168:5992:-532.551,-44.3384,0	0/1:124:77,47:77:2756:47:1676:-113.799,0,-210.954	1/1:188:0,188:0:0:188:6720:-604.875,-56.5936,0	1/1:208:0,208:0:0:208:7373:-663.62,-62.6142,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:94:50,44:50:1800:44:1566:-112.935,0,-133.985	1/1:50:0,50:0:0:50:1796:-161.922,-15.0515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:70:0,70:0:0:70:2485:-223.902,-21.0721,0	1/1:83:0,83:0:0:83:2930:-263.931,-24.9855,0	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:57:27,30:27:972:30:1065:-79.001,0,-70.6392	0/1:187:108,79:108:3845:79:2824:-198.107,0,-289.952	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:217:0,217:0:0:217:7745:-697.083,-65.3235,0	0/1:242:128,114:128:4576:114:4088:-294.986,0,-339.157	0/1:48:23,25:23:819:25:891:-66.0593,0,-59.5821	0/1:115:52,62:52:1864:62:2212:-164.668,0,-133.362	1/1:187:0,187:0:0:187:6647:-598.31,-56.2926,0	1/1:189:2,187:2:72:187:6682:-594.62,-50.0579,0	0/1:12:5,7:5:180:7:228:-17.2203,0,-12.9397	1/1:78:2,76:2:72:76:2704:-236.275,-16.6436,0	1/1:128:0,128:0:0:128:4533:-408.138,-38.5318,0	0/1:31:19,12:19:672:12:432:-29.8893,0,-51.4749	1/1:67:0,67:0:0:67:2354:-212.116,-20.169,0	0/1:35:8,27:8:284:27:964:-76.5408,0,-15.3673	0/1:83:41,42:41:1464:42:1480:-108.507,0,-107.071	1/1:232:1,231:1:32:231:8247:-739.044,-66.6396,0	0/1:28:15,13:15:540:13:459:-33.2152,0,-40.5077	1/1:78:2,76:2:72:76:2712:-237.488,-16.6436,0	0/1:5:3,2:3:108:2:59:-4.09899,0,-8.57002	0/1:92:48,44:48:1716:44:1580:-114.797,0,-127.031	0/1:61:33,28:33:1184:28:1004:-72.313,0,-88.5055	1/1:315:1,314:1:36:314:11216:-1005.73,-91.2262,0	0/1:143:85,58:85:3032:58:2080:-144.423,0,-230.064	0/1:76:46,30:46:1635:30:1080:-74.635,0,-124.559	1/1:141:0,141:0:0:141:4987:-448.968,-42.4452,0	1/1:192:1,191:1:36:191:6826:-610.813,-54.1995,0	0/1:22:13,9:13:459:9:309:-21.5181,0,-35.0214	1/1:50:0,50:0:0:50:1788:-161.198,-15.0515,0	0/1:39:18,21:18:644:21:752:-56.2661,0,-46.5504	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	0/1:48:19,29:19:675:29:1025:-78.1113,0,-46.6275	0/1:76:51,25:51:1828:25:896:-58.0821,0,-141.923	1/1:169:1,168:1:36:168:5966:-533.36,-47.2758,0	1/1:122:0,122:0:0:122:4351:-391.766,-36.7257,0
chr11	31744055	.	C	T	102517	PASS	AB=0.649073;ABP=482.099;AC=144;AF=0.765957;AN=188;AO=4773;CIGAR=1X;DP=5653;DPB=5653;DPRA=0;EPP=10367.4;EPPR=1911.73;GTI=6;LEN=1;MEANALT=1.01064;MQM=59.93;MQMR=59.9886;NS=94;NUMALT=1;ODDS=1.79909;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=171067;QR=31368;RO=879;RPL=4773;RPP=10367.4;RPPR=1911.73;RPR=0;RUN=1;SAF=0;SAP=10367.4;SAR=4773;SRF=0;SRP=1911.73;SRR=879;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	0/1:92:27,65:27:972:65:2332:-182.437,0,-60.1031	0/1:83:24,59:24:860:59:2103:-164.505,0,-52.7363	0/1:75:23,52:23:828:52:1868:-145.822,0,-52.2669	0/1:29:5,24:5:180:24:856:-68.6312,0,-7.82219	0/1:40:5,35:5:180:35:1256:-101.304,0,-4.51086	1/1:79:1,78:1:36:78:2792:-247.899,-20.1831,0	0/1:92:22,70:22:784:70:2483:-195.954,0,-43.1892	0/1:48:16,32:16:568:32:1144:-88.8201,0,-37.0024	1/1:84:0,84:0:0:84:3012:-271.311,-25.2865,0	0/1:50:17,33:17:612:33:1163:-89.9246,0,-40.3619	1/1:72:0,72:0:0:72:2592:-233.523,-21.6742,0	0/1:36:9,27:9:320:27:968:-76.6003,0,-18.3053	1/1:98:0,98:0:0:98:3508:-315.93,-29.5009,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	0/1:53:15,38:15:536:38:1364:-107.07,0,-32.6202	0/1:50:14,36:14:504:36:1292:-101.532,0,-30.6466	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	1/1:109:0,109:0:0:109:3897:-350.908,-32.8123,0	0/1:74:23,51:23:828:51:1832:-142.885,0,-52.5679	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:18:8,10:8:280:10:360:-27.3258,0,-20.1208	1/1:91:0,91:0:0:91:3264:-293.979,-27.3937,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:130:61,69:61:2168:69:2476:-183.958,0,-156.253	0/1:92:33,59:33:1184:59:2106:-162.112,0,-79.1736	0/1:29:6,23:6:216:23:828:-66.1142,0,-11.0606	0/1:105:36,69:36:1284:69:2484:-192.204,0,-84.2553	1/1:90:0,90:0:0:90:3208:-287.578,-27.0927,0	1/1:68:0,68:0:0:68:2444:-220.201,-20.47,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:4:2,2:2:72:2:72:-5.63014,0,-5.6326	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:158:0,158:0:0:158:5671:-510.505,-47.5627,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:64:13,51:13:460:51:1832:-145.895,0,-22.4695	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:51:12,39:12:424:39:1373:-108.513,0,-23.1439	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:81:0,81:0:0:81:2898:-261.056,-24.3834,0	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	1/1:75:0,75:0:0:75:2694:-242.702,-22.5773,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:47:17,30:17:612:30:1067:-82.1928,0,-41.265	1/1:103:2,101:2:72:101:3609:-318.177,-24.1694,0	0/1:60:33,27:33:1184:27:972:-69.7361,0,-88.8065	1/1:96:1,95:1:36:95:3412:-303.692,-25.3006,0	1/1:75:0,74:0:0:74:2646:-238.066,-22.2762,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:70:24,46:24:864:46:1633:-126.185,0,-57.0105	1/1:31:0,31:0:0:31:1104:-99.6701,-9.33193,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	1/1:78:0,78:0:0:78:2798:-252.05,-23.4803,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:53:18,35:18:648:35:1256:-97.3907,0,-42.6973	0/1:81:30,51:30:1068:51:1836:-141.137,0,-72.0486	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:98:0,98:0:0:98:3524:-317.36,-29.5009,0	0/1:64:20,44:20:712:44:1580:-123.222,0,-45.1407	0/1:45:16,29:16:572:29:1026:-79.1037,0,-38.2671	0/1:61:24,37:24:860:37:1324:-101.099,0,-59.359	1/1:87:0,87:0:0:87:3116:-280.653,-26.1896,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:23:2,21:2:72:21:756:-61.5305,-0.0869676,0	1/1:51:0,51:0:0:51:1817:-163.807,-15.3525,0	1/1:73:0,73:0:0:73:2624:-236.407,-21.9752,0	0/1:19:8,11:8:288:11:396:-30.2598,0,-20.5478	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	0/1:184:120,64:120:4257:64:2277:-149.8,0,-327.919	1/1:82:0,82:0:0:82:2932:-264.107,-24.6845,0	0/1:62:17,45:17:612:45:1611:-126.615,0,-36.7496	1/1:85:0,85:0:0:85:3047:-274.458,-25.5876,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:47:11,36:11:392:36:1296:-102.796,0,-21.4716	0/1:58:15,43:15:531:43:1544:-121.793,0,-30.6622	1/1:128:1,127:1:36:127:4552:-406.245,-34.9336,0	0/1:58:25,33:25:892:33:1188:-89.7689,0,-63.1399	0/1:41:16,25:16:554:25:900:-68.9788,0,-37.8427	1/1:100:0,100:0:0:100:3592:-323.486,-30.103,0	1/1:119:1,118:1:36:118:4244:-378.493,-32.2243,0	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	0/1:50:14,36:14:504:36:1285:-100.901,0,-30.6466	0/1:61:12,49:12:432:49:1760:-140.321,0,-20.8584	0/1:75:28,47:28:982:47:1688:-129.63,0,-66.1144	0/1:60:25,35:25:888:35:1259:-95.5537,0,-62.1717	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0
chr11	31751469	.	T	C	31992.6	PASS	AB=0.478626;ABP=19.5331;AC=46;AF=0.244681;AN=188;AO=2014;CIGAR=1X;DP=8789;DPB=8789;DPRA=1.23051;EPP=4376.36;EPPR=14712.6;GTI=1;LEN=1;MEANALT=1.01786;MQM=59.998;MQMR=60;NS=94;NUMALT=1;ODDS=0.189532;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70824;QR=242476;RO=6774;RPL=0;RPP=4376.36;RPPR=14712.6;RPR=2014;RUN=1;SAF=0;SAP=4376.36;SAR=2014;SRF=0;SRP=14712.6;SRR=6774;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/1:113:51,62:51:1823:62:2177:-162.179,0,-130.334	0/1:104:54,50:54:1931:50:1766:-127.915,0,-142.759	0/1:226:124,102:124:4448:102:3605:-256.626,0,-332.457	0/1:63:28,35:28:1008:35:1226:-91.6774,0,-72.0715	0/1:33:16,17:16:567:17:603:-44.6655,0,-41.4267	0/0:177:176,1:176:6307:1:36:0,-49.684,-564.123	0/1:97:50,47:50:1784:47:1636:-118.325,0,-131.643	0/1:54:38,16:38:1368:16:568:-35.1962,0,-107.165	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:64:31,33:31:1108:33:1146:-84.1764,0,-80.7651	0/0:79:79,0:79:2801:0:0:0,-23.7814,-252.33	0/1:55:22,33:22:784:33:1159:-88.0592,0,-54.3273	0/0:61:61,0:61:2179:0:0:0,-18.3628,-196.376	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:57:57,0:57:2031:0:0:0,-17.1587,-183.062	0/1:62:18,44:18:640:44:1547:-120.857,0,-39.2655	0/1:59:32,27:32:1152:27:951:-68.1435,0,-86.2294	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.935	0/0:325:324,1:324:11644:1:27:0,-95.135,-1045.12	0/1:147:75,72:75:2670:72:2531:-183.79,0,-196.293	0/0:144:144,0:144:5163:0:0:0,-43.3483,-464.809	0/1:47:25,22:25:900:22:779:-56.2837,0,-67.1726	0/0:127:123,4:123:4408:4:131:0,-26.1173,-384.778	0/0:72:72,0:72:2579:0:0:0,-21.6742,-232.359	0/1:248:141,107:141:5048:107:3779:-265.655,0,-379.81	0/1:154:83,71:83:2980:71:2503:-179.162,0,-222.073	0/1:41:15,26:15:532:26:920:-70.7748,0,-35.8709	0/1:304:155,148:155:5544:148:5177:-374.504,0,-407.513	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:113:111,2:111:3984:2:72:0,-27.1797,-351.912	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:13:7,6:7:252:6:208:-15.1457,0,-19.1156	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:169:169,0:169:6046:0:0:0,-50.8741,-544.243	0/0:118:117,1:117:4188:1:21:0,-33.4216,-375.002	0/1:58:32,26:32:1139:26:907:-64.4846,0,-85.3586	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:184:98,86:98:3504:86:3037:-218.171,0,-260.181	0/0:46:46,0:46:1640:0:0:0,-13.8474,-147.889	0/0:125:122,3:122:4341:3:108:0,-27.5536,-380.791	0/0:74:74,0:74:2660:0:0:0,-22.2762,-239.645	0/0:81:81,0:81:2887:0:0:0,-24.3834,-260.067	0/0:98:98,0:98:3511:0:0:0,-29.5009,-316.199	0/1:108:61,47:61:2187:47:1676:-118.616,0,-164.584	0/0:221:221,0:221:7915:0:0:0,-66.5276,-712.374	0/1:117:60,57:60:2156:57:2023:-147.122,0,-159.086	0/0:132:131,1:131:4688:1:36:0,-36.1377,-418.483	0/0:159:159,0:159:5712:0:0:0,-47.8638,-514.195	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:276:165,111:165:5890:111:3972:-274.587,0,-447.127	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:116:116,0:116:4168:0:0:0,-34.9195,-375.301	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.5636	0/1:44:26,18:26:932:18:644:-45.0453,0,-70.9535	0/1:105:43,62:43:1544:62:2154:-162.516,0,-107.645	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:178:178,0:178:6396:0:0:0,-53.5833,-575.726	0/1:157:73,84:73:2611:84:2979:-221.082,0,-187.976	0/1:62:36,26:36:1288:26:936:-65.8956,0,-97.5597	0/1:76:38,38:38:1368:38:1333:-97.3893,0,-100.543	0/0:147:146,1:146:5243:1:27:0,-41.5516,-469.305	0/0:69:69,0:69:2450:0:0:0,-20.7711,-220.754	0/1:35:17,18:17:612:18:631:-46.5796,0,-44.8774	0/0:78:78,0:78:2796:0:0:0,-23.4803,-251.88	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/1:107:57,50:57:2040:50:1731:-123.861,0,-151.662	0/1:136:81,55:81:2892:55:1948:-134.656,0,-219.577	0/0:172:172,0:172:6164:0:0:0,-51.7772,-554.858	0/1:72:47,25:47:1679:25:864:-56.3981,0,-129.722	0/0:107:104,3:104:3715:3:99:0,-22.9736,-325.315	0/1:12:2,10:2:68:10:356:-28.7689,0,-2.84535	0/1:158:93,65:93:3336:65:2293:-159.068,0,-252.894	0/1:102:47,55:47:1692:55:1943:-144.441,0,-121.862	0/0:249:249,0:249:8924:0:0:0,-74.9565,-803.141	0/1:75:36,39:36:1279:39:1358:-99.9379,0,-92.8352	0/1:63:29,34:29:1040:34:1142:-84.1107,0,-74.9495	0/0:91:91,0:91:3251:0:0:0,-27.3937,-292.811	0/0:130:126,4:126:4482:4:136:0,-26.5584,-390.973	0/1:33:14,19:14:504:19:664:-50.1505,0,-35.7641	0/0:86:86,0:86:3067:0:0:0,-25.8886,-276.259	0/1:66:41,25:41:1468:25:879:-59.5588,0,-112.548	0/1:47:24,23:24:856:23:812:-59.2525,0,-63.2127	0/1:76:44,32:44:1576:32:1118:-78.0477,0,-119.253	0/1:82:21,61:21:752:61:2130:-167.284,0,-43.3218	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:100:100,0:100:3561:0:0:0,-30.103,-320.698
chr11	31781496	.	T	G	43154.3	PASS	AB=0.560009;ABP=141.919;AC=46;AF=0.247312;AN=186;AO=2506;CIGAR=1X;DP=8312;DPB=8312;DPRA=1.31762;EPP=5401.38;EPPR=12510.8;GTI=4;LEN=1;MEANALT=1.125;MQM=54.8871;MQMR=59.5594;NS=93;NUMALT=1;ODDS=1.29974;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89127;QR=207642;RO=5796;RPL=5;RPP=5401.38;RPPR=12502.2;RPR=2501;RUN=1;SAF=0;SAP=5444.72;SAR=2506;SRF=1;SRP=12580.2;SRR=5795;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.108	0/1:99:43,56:43:1548:56:2008:-150.907,0,-109.81	0/1:163:72,91:72:2569:91:3245:-242.599,0,-182.358	0/1:140:59,81:59:2120:81:2862:-215.3,0,-148.844	0/1:43:17,26:17:608:26:936:-71.4908,0,-42.1077	0/1:57:19,38:19:680:38:1355:-104.969,0,-44.3536	0/0:156:156,0:156:5596:0:0:0,-46.9607,-503.615	0/1:141:63,78:63:2268:78:2791:-208.628,0,-161.93	0/1:143:71,72:71:2543:72:2576:-188.748,0,-186.024	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.683	0/1:68:30,38:30:1076:38:1351:-101.243,0,-76.4183	0/0:137:136,0:136:4888:0:0:0,-40.9401,-439.7	0/1:93:47,46:47:1688:46:1623:-117.793,0,-124.188	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.512	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.402	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.728	0/1:42:25,17:25:900:17:599:-41.3888,0,-68.6654	0/1:35:15,20:15:540:20:694:-52.1139,0,-38.3836	0/0:52:51,0:51:1836:0:0:0,-15.3525,-165.048	0/0:121:121,0:121:4348:0:0:0,-36.4246,-391.426	0/1:139:71,68:71:2537:68:2400:-174.307,0,-186.736	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.202	0/1:76:36,40:36:1288:40:1432:-106.128,0,-93.3277	0/0:99:97,2:97:3480:2:72:0,-22.9685,-306.531	0/0:119:119,0:119:4226:0:0:0,-35.8226,-380.219	0/1:215:92,123:92:3304:123:4374:-328.365,0,-232.847	0/1:317:100,217:100:3600:217:7730:-599.162,0,-228.746	0/1:24:13,11:13:468:11:396:-28.7409,0,-35.2316	0/1:212:83,129:83:2980:129:4632:-352.549,0,-204.572	0/0:72:70,2:70:2520:2:57:0,-16.2625,-221.601	0/0:74:73,1:73:2605:1:32:0,-19.0789,-231.491	0/1:9:3,6:3:108:6:212:-16.7071,0,-7.3659	1/1:4:0,4:0:0:4:140:-12.9392,-1.20412,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:9:8,1:8:288:1:36:-0.885298,0,-23.5581	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:197:196,0:196:7014:0:0:0,-59.0019,-630.895	0/0:135:135,0:135:4836:0:0:0,-40.639,-435.267	0/1:60:29,30:29:1044:30:1023:-74.0902,0,-76.1831	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:142:60,82:60:2141:82:2948:-220.518,0,-150.204	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:113:113,0:113:4039:0:0:0,-34.0164,-363.652	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.126	0/0:50:50,0:50:1787:0:0:0,-15.0515,-161.065	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.043	0/1:105:40,65:40:1413:65:2319:-176.61,0,-95.845	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.444	0/1:103:49,54:49:1756:54:1920:-141.04,0,-127.29	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.392	0/0:221:221,0:221:7898:0:0:0,-66.5276,-710.745	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:277:101,175:101:3624:175:6241:-476.373,0,-242.9	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5418	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:99:98,1:98:3498:1:36:0,-26.2054,-311.426	0/0:42:39,3:39:1400:3:108:0,-2.58238,-116.238	.:.:.:.:.:.:.:.	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0969	0/1:97:43,54:43:1517:54:1928:-144.4,0,-107.546	0/1:94:47,46:47:1684:46:1656:-120.564,0,-123.481	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0458	0/0:89:88,1:88:3156:1:36:0,-23.289,-280.741	0/1:184:67,117:67:2408:117:4166:-319.029,0,-161.522	0/1:78:45,32:45:1608:32:1135:-78.7885,0,-121.45	0/1:43:16,26:16:576:26:936:-71.3117,0,-39.1715	0/0:111:111,0:111:3964:0:0:0,-33.4143,-356.775	0/0:139:138,1:138:4939:1:36:0,-38.25,-440.934	0/1:74:35,39:35:1256:39:1370:-101.156,0,-91.0691	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.511	0/0:59:59,0:59:2105:0:0:0,-17.7608,-189.647	0/1:17:10,7:10:356:7:252:-17.8788,0,-27.2637	0/0:132:132,0:132:4732:0:0:0,-39.736,-425.993	0/1:128:58,70:58:2065:70:2490:-185.151,0,-147.36	0/1:178:78,100:78:2796:100:3573:-267.404,0,-198.174	0/0:110:109,1:109:3912:1:36:0,-29.5201,-348.625	0/1:104:56,48:56:2004:48:1701:-120.146,0,-149.288	0/0:91:91,0:91:3247:0:0:0,-27.3937,-292.395	0/1:4:1,3:1:36:3:108:-8.86067,0,-2.39415	0/1:88:40,48:40:1440:48:1696:-126.193,0,-103.209	0/1:92:41,51:41:1468:51:1800:-134.418,0,-104.7	0/0:156:155,1:155:5553:1:36:0,-43.3675,-495.386	0/1:56:22,34:22:792:34:1207:-91.8618,0,-54.7303	0/1:100:45,55:45:1603:55:1968:-146.675,0,-114.441	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.049	0/0:127:126,1:126:4523:1:36:0,-34.6376,-403.576	0/1:21:10,11:10:352:11:379:-28.0869,0,-25.6903	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.458	0/1:83:50,33:50:1787:33:1164:-79.8593,0,-136.106	0/1:74:48,26:48:1720:26:927:-61.4305,0,-132.797	0/1:132:63,68:63:2268:68:2393:-175.483,0,-164.626	0/1:82:26,55:26:928:55:1914:-147.263,0,-59.0771	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.33	0/0:84:83,1:83:2976:1:36:0,-21.6933,-264.438
chr11	31794107	.	A	G	173848	PASS	AB=0.485893;ABP=12.3837;AC=142;AF=0.755319;AN=188;AO=8082;CIGAR=1X;DP=10893;DPB=10893;DPRA=0;EPP=17544.2;EPPR=6080.96;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.9767;MQMR=59.9843;NS=94;NUMALT=1;ODDS=1.18308;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=286951;QR=100164;RO=2803;RPL=132;RPP=16425;RPPR=5390.07;RPR=7950;RUN=1;SAF=131;SAP=16433.4;SAR=7951;SRF=82;SRP=5398.24;SRR=2721;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,50:0:0:50:1783:-160.392,-15.0515,0	0/1:78:46,32:46:1637:32:1137:-79.1566,0,-124.136	0/1:148:75,73:75:2692:73:2592:-188.974,0,-197.972	0/1:301:155,146:155:5538:146:5183:-376,0,-407.932	0/1:138:70,68:70:2493:68:2396:-174.353,0,-183.079	0/1:75:34,41:34:1224:41:1455:-108.668,0,-87.8898	1/1:159:0,158:0:0:158:5590:-502.863,-47.5627,0	0/1:180:87,93:87:3116:93:3293:-242.393,0,-226.481	0/1:163:97,65:97:3480:65:2319:-159.843,0,-264.284	1/1:75:0,75:0:0:75:2673:-240.814,-22.5773,0	0/1:44:19,25:19:680:25:900:-68.0757,0,-48.2838	1/1:144:0,144:0:0:144:5107:-459.775,-43.3483,0	0/1:85:45,40:45:1589:40:1422:-102.689,0,-117.711	1/1:42:0,42:0:0:42:1472:-132.772,-12.6433,0	1/1:80:0,79:0:0:79:2809:-252.729,-23.7814,0	1/1:63:0,63:0:0:63:2234:-201.323,-18.9649,0	0/1:27:14,13:14:487:13:455:-33.1541,0,-36.0314	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	1/1:19:0,19:0:0:19:657:-59.4502,-5.71957,0	1/1:189:0,188:0:0:188:6705:-603.165,-56.5936,0	0/1:182:78,104:78:2800:104:3670:-275.717,0,-197.452	1/1:118:0,118:0:0:118:4178:-376.18,-35.5215,0	0/1:132:72,60:72:2548:60:2148:-153.825,0,-189.833	0/1:98:11,87:11:396:87:3085:-248.377,0,-6.48181	1/1:95:0,95:0:0:95:3349:-301.626,-28.5979,0	0/1:367:211,156:211:7546:156:5561:-390.136,0,-568.702	0/1:322:176,146:176:6298:146:5186:-369.949,0,-468.703	0/1:36:16,20:16:576:20:681:-50.7691,0,-41.3379	0/1:390:197,193:197:7048:193:6855:-499.621,0,-516.98	1/1:163:5,158:5:176:158:5621:-489.823,-32.8829,0	1/1:114:2,112:2:72:112:3991:-352.542,-27.4807,0	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/1:24:13,11:13:459:11:392:-28.3953,0,-34.4194	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:26:0,26:0:0:26:919:-83.0253,-7.82678,0	1/1:202:0,201:0:0:201:7128:-641.223,-60.507,0	1/1:207:0,207:0:0:207:7406:-665.566,-62.3132,0	0/1:40:24,16:24:864:16:563:-38.958,0,-66.0414	1/1:4:0,4:0:0:4:142:-13.1292,-1.20412,0	0/1:143:72,71:72:2584:71:2531:-184.993,0,-189.762	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:259:0,259:0:0:259:9177:-825.907,-77.9668,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	1/1:51:0,51:0:0:51:1758:-158.413,-15.3525,0	1/1:159:0,159:0:0:159:5606:-504.664,-47.8638,0	0/1:142:78,64:78:2792:64:2256:-160.537,0,-208.774	1/1:241:0,241:0:0:241:8522:-766.983,-72.5482,0	0/1:165:82,83:82:2940:83:2953:-216.333,0,-215.164	1/1:197:0,197:0:0:197:7018:-631.683,-59.3029,0	1/1:191:0,191:0:0:191:6818:-613.692,-57.4967,0	1/1:11:0,11:0:0:11:384:-34.8941,-3.31133,0	0/1:132:67,65:67:2393:65:2315:-168.874,0,-175.889	1/1:60:0,60:0:0:60:2148:-193.587,-18.0618,0	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	1/1:141:0,141:0:0:141:4978:-448.17,-42.4452,0	1/1:40:0,40:0:0:40:1423:-128.366,-12.0412,0	0/1:15:6,9:6:201:9:320:-24.6269,0,-13.9016	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:86:38,48:38:1368:48:1705:-127.846,0,-97.5322	0/1:98:53,45:53:1882:45:1592:-114.067,0,-140.156	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:198:0,198:0:0:198:6989:-629.075,-59.6039,0	0/1:239:115,124:115:4124:124:4401:-324.316,0,-299.397	0/1:66:32,34:32:1109:34:1207:-89.0665,0,-80.244	0/1:147:75,71:75:2681:71:2541:-184.63,0,-197.223	1/1:194:1,192:1:36:192:6794:-607.933,-54.8603,0	1/1:256:3,253:3:108:253:9006:-800.43,-66.9885,0	0/1:42:19,23:19:684:23:811:-60.6667,0,-49.2471	1/1:68:0,68:0:0:68:2418:-217.875,-20.47,0	1/1:38:0,38:0:0:38:1330:-119.996,-11.4391,0	0/1:18:10,8:10:360:8:268:-19.0263,0,-27.3258	1/1:228:0,228:0:0:228:8028:-722.547,-68.6348,0	0/1:93:47,46:47:1692:46:1635:-119.442,0,-124.571	0/1:119:46,73:46:1652:73:2600:-198.426,0,-113.146	1/1:235:0,235:0:0:235:8399:-755.914,-70.7421,0	0/1:193:117,76:117:4186:76:2709:-185.955,0,-318.822	1/1:146:6,140:6:212:140:4979:-428.833,-24.5256,0	0/1:31:15,16:15:540:16:572:-42.4815,0,-39.6046	0/1:163:98,65:98:3492:65:2323:-160.262,0,-265.422	0/1:166:98,68:98:3508:68:2444:-170.244,0,-265.959	1/1:230:0,230:0:0:230:8170:-735.316,-69.2369,0	0/1:59:24,35:24:860:35:1235:-93.6927,0,-59.9611	0/1:78:31,47:31:1099:47:1684:-128.367,0,-75.7391	1/1:65:0,65:0:0:65:2290:-206.359,-19.567,0	1/1:155:0,155:0:0:155:5500:-495.124,-46.6597,0	0/1:28:18,10:18:616:10:360:-24.3155,0,-47.33	1/1:84:0,84:0:0:84:3004:-270.591,-25.2865,0	0/1:85:39,46:39:1388:46:1623:-120.768,0,-99.6314	0/1:32:19,13:19:684:13:468:-32.8267,0,-52.2574	0/1:121:62,59:62:2219:59:2073:-150.413,0,-163.549	0/1:87:58,29:58:2063:29:1029:-66.7324,0,-159.751	1/1:224:0,224:0:0:224:7999:-719.932,-67.4307,0	1/1:114:0,114:0:0:114:4058:-365.405,-34.3174,0
chr11	31794131	.	G	C	168340	PASS	AB=0.48384;ABP=15.0111;AC=142;AF=0.755319;AN=188;AO=7977;CIGAR=1X;DP=10725;DPB=10725;DPRA=0;EPP=17194.8;EPPR=5911.7;GTI=1;LEN=1;MEANALT=1.03191;MQM=59.9808;MQMR=59.984;NS=94;NUMALT=1;ODDS=0.918016;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=284692;QR=97905;RO=2745;RPL=7962;RPP=17194.8;RPPR=5911.7;RPR=15;RUN=1;SAF=0;SAP=17324.8;SAR=7977;SRF=0;SRP=5963.7;SRR=2745;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47:0:0:47:1674:-150.946,-14.1484,0	0/1:78:45,33:45:1603:33:1184:-83.388,0,-121.079	0/1:147:75,72:75:2667:72:2584:-188.549,0,-196.025	0/1:306:158,148:158:5616:148:5246:-380.162,0,-413.449	0/1:97:49,48:49:1722:48:1709:-124.895,0,-126.064	0/1:68:33,35:33:1171:35:1260:-93.2354,0,-85.2266	1/1:161:0,161:0:0:161:5768:-519.233,-48.4658,0	0/1:176:86,90:86:3044:90:3201:-235.332,0,-221.208	0/1:162:97,65:97:3464:65:2288:-157.413,0,-263.206	1/1:75:0,75:0:0:75:2673:-240.815,-22.5773,0	0/1:45:20,25:20:712:25:900:-67.7747,0,-50.8603	1/1:142:0,142:0:0:142:5075:-456.895,-42.7463,0	0/1:89:49,39:49:1739:39:1391:-98.6379,0,-129.943	1/1:43:0,43:0:0:43:1519:-137.001,-12.9443,0	1/1:79:0,79:0:0:79:2832:-255.118,-23.7814,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	0/1:27:14,13:14:500:13:468:-34.3318,0,-37.2084	0/1:24:15,9:15:540:9:324:-22.2811,0,-41.7118	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:192:0,192:0:0:192:6891:-620.255,-57.7978,0	0/1:178:76,102:76:2724:102:3641:-274.31,0,-191.82	1/1:118:0,118:0:0:118:4176:-376.017,-35.5215,0	0/1:134:74,60:74:2644:60:2113:-150.079,0,-197.867	0/1:98:10,87:10:356:87:3078:-247.688,0,-2.82187	1/1:84:0,84:0:0:84:3008:-270.951,-25.2865,0	0/1:369:210,159:210:7487:159:5655:-397.991,0,-562.794	0/1:324:181,143:181:6450:143:5098:-361.43,0,-481.781	0/1:38:17,21:17:604:21:748:-56.2056,0,-43.2515	0/1:389:194,195:194:6943:195:6958:-509.186,0,-507.835	1/1:162:5,157:5:176:157:5584:-486.496,-32.5818,0	1/1:110:2,108:2:72:108:3876:-342.197,-26.2766,0	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/1:23:13,10:13:455:10:360:-25.8206,0,-34.3583	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:3:0,3:0:0:3:107:-9.98217,-0.90309,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:204:0,204:0:0:204:7296:-656.692,-61.4101,0	1/1:205:0,205:0:0:205:7360:-662.445,-61.7112,0	0/1:40:23,17:23:828:17:608:-43.0108,0,-62.8029	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:143:73,70:73:2591:70:2512:-183.285,0,-190.392	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:257:0,257:0:0:257:9160:-824.369,-77.3647,0	1/1:62:0,62:0:0:62:2225:-200.514,-18.6639,0	1/1:53:0,53:0:0:53:1859:-167.584,-15.9546,0	1/1:153:0,153:0:0:153:5455:-491.077,-46.0576,0	0/1:134:73,61:73:2620:61:2159:-154.233,0,-195.709	1/1:237:0,237:0:0:237:8462:-761.582,-71.3441,0	0/1:164:82,82:82:2929:82:2911:-212.855,0,-214.474	1/1:192:0,192:0:0:192:6846:-616.21,-57.7978,0	1/1:190:0,190:0:0:190:6756:-608.113,-57.1957,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:126:66,60:66:2359:60:2117:-152.865,0,-174.638	1/1:60:0,60:0:0:60:2141:-192.956,-18.0618,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:139:0,139:0:0:139:4977:-448.076,-41.8432,0	1/1:40:0,40:0:0:40:1417:-127.825,-12.0412,0	0/1:17:6,11:6:216:11:388:-30.1399,0,-14.673	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:88:38,50:38:1364:50:1779:-133.9,0,-96.5701	0/1:101:54,47:54:1927:47:1686:-121.623,0,-143.302	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:203:0,203:0:0:203:7226:-650.392,-61.1091,0	0/1:238:115,123:115:4108:123:4367:-321.561,0,-298.261	0/1:63:31,32:31:1071:32:1121:-82.2308,0,-77.7293	0/1:144:76,68:76:2715:68:2406:-173.446,0,-201.245	1/1:193:1,192:1:36:192:6873:-615.008,-54.5005,0	1/1:258:3,255:3:108:255:9140:-812.493,-67.5906,0	0/1:40:19,21:19:680:21:752:-55.9651,0,-49.488	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:38:0,38:0:0:38:1359:-122.609,-11.4391,0	0/1:19:11,8:11:392:8:266:-18.5432,0,-29.9005	1/1:226:0,226:0:0:226:8081:-727.307,-68.0328,0	0/1:94:48,46:48:1720:46:1633:-118.96,0,-126.789	0/1:116:46,70:46:1635:70:2478:-188.351,0,-112.519	1/1:234:0,234:0:0:234:8384:-754.562,-70.441,0	0/1:132:83,49:83:2975:49:1756:-118.588,0,-228.246	1/1:144:6,138:6:212:138:4911:-422.717,-23.9235,0	0/1:31:15,16:15:536:16:576:-42.8431,0,-39.2429	0/1:161:94,66:94:3351:66:2376:-165.573,0,-253.283	0/1:160:94,66:94:3364:66:2366:-165.033,0,-254.812	1/1:231:0,231:0:0:231:8246:-742.152,-69.5379,0	0/1:60:26,34:26:932:34:1224:-92.4052,0,-66.1371	0/1:78:31,47:31:1104:47:1692:-129.087,0,-76.1903	1/1:65:0,65:0:0:65:2322:-209.239,-19.567,0	1/1:152:0,152:0:0:152:5436:-489.368,-45.7566,0	0/1:28:18,10:18:640:10:356:-23.9524,0,-49.5005	1/1:87:0,87:0:0:87:3105:-279.677,-26.1896,0	0/1:86:40,46:40:1423:46:1656:-123.44,0,-102.478	0/1:31:19,12:19:680:12:432:-29.8893,0,-52.1972	0/1:121:62,59:62:2232:59:2101:-152.934,0,-164.719	0/1:83:56,27:56:2000:27:959:-61.6399,0,-155.288	1/1:227:0,227:0:0:227:8102:-729.196,-68.3338,0	1/1:114:0,114:0:0:114:4083:-367.656,-34.3174,0
chr11	31794275	.	A	T	14259.6	PASS	AB=0.437925;ABP=81.7299;AC=47;AF=0.25;AN=188;AO=1039;CIGAR=1X;DP=5186;DPB=5186;DPRA=0.954031;EPP=2259.17;EPPR=8990.73;GTI=3;LEN=1;MEANALT=1.03922;MQM=59.9673;MQMR=59.9966;NS=94;NUMALT=1;ODDS=1.96359;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35052;QR=146949;RO=4139;RPL=0;RPP=2259.17;RPPR=8982.05;RPR=1039;RUN=1;SAF=0;SAP=2259.17;SAR=1039;SRF=1;SRP=8982.05;SRR=4138;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:18,0:18:644:0:0:0,-5.41854,-57.931	0/1:19:8,11:8:280:11:375:-28.3583,0,-19.8197	0/1:78:43,35:43:1540:35:1161:-81.235,0,-115.413	0/1:103:48,55:48:1711:55:1856:-136.309,0,-123.269	0/1:28:19,9:19:667:9:304:-19.2595,0,-51.9258	0/1:29:18,9:18:648:9:312:-19.9301,0,-50.1642	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:52:27,25:27:972:25:844:-60.6163,0,-72.1443	0/1:61:31,30:31:1097:30:1011:-72.9293,0,-80.6752	0/0:54:54,0:54:1912:0:0:0,-16.2556,-172.355	0/1:43:28,15:28:1004:15:491:-31.5576,0,-77.7316	0/0:88:88,0:88:3128:0:0:0,-26.4906,-281.748	0/1:58:30,27:30:1059:27:907:-64.4177,0,-78.1021	0/0:54:54,0:54:1902:0:0:0,-16.2556,-171.457	0/0:56:56,0:56:1998:0:0:0,-16.8577,-180.092	0/0:52:52,0:52:1843:0:0:0,-15.6536,-166.15	0/1:28:17,11:17:595:11:371:-25.2863,0,-45.4478	0/1:19:14,5:14:504:5:163:-9.27179,0,-39.9785	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/0:53:52,1:52:1856:1:36:0,-12.3563,-163.721	0/1:57:29,28:29:1021:28:932:-67.0244,0,-75.0415	0/0:32:32,0:32:1117:0:0:0,-9.63296,-100.835	0/1:50:31,19:31:1097:19:652:-43.9467,0,-83.9865	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/1:148:83,65:83:2956:65:2199:-153.622,0,-221.722	0/1:124:81,43:81:2894:43:1471:-95.3547,0,-223.367	0/1:20:13,7:13:464:7:248:-16.6436,0,-36.0769	0/1:107:50,57:50:1779:57:1928:-141.58,0,-128.182	0/0:92:91,1:91:3209:1:36:0,-24.0965,-285.434	0/0:79:79,0:79:2811:0:0:0,-23.7814,-253.23	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:5,4:5:180:4:122:-8.5731,0,-13.8428	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67673	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:164:164,0:164:5828:0:0:0,-49.3689,-524.638	0/0:59:56,3:56:1977:3:104:0,-8.05796,-168.5	0/1:38:21,17:21:740:17:574:-40.5394,0,-55.4842	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:55:27,28:27:960:28:941:-68.4384,0,-70.1596	0/0:44:43,0:43:1524:0:0:0,-12.9443,-137.093	0/0:157:155,2:155:5489:2:68:0,-40.804,-487.685	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275	0/0:53:53,0:53:1871:0:0:0,-15.9546,-168.668	0/0:60:60,0:60:2118:0:0:0,-18.0618,-190.888	0/1:70:38,32:38:1351:32:1087:-77.0605,0,-100.817	0/0:123:123,0:123:4387:0:0:0,-37.0267,-395.004	0/1:53:36,17:36:1288:17:580:-36.5675,0,-100.269	0/0:96:96,0:96:3383:0:0:0,-28.8989,-304.687	0/0:54:54,0:54:1913:0:0:0,-16.2556,-172.445	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:72:39,33:39:1369:33:1143:-81.5006,0,-101.832	0/0:31:31,0:31:1100:0:0:0,-9.33193,-99.3103	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:111:111,0:111:3943:0:0:0,-33.4143,-355.064	0/0:39:39,0:39:1376:0:0:0,-11.7402,-124.136	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:37:22,15:22:783:15:513:-35.3548,0,-59.6548	0/1:91:60,31:60:2113:31:1046:-67.0503,0,-163.044	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:150:150,0:150:5363:0:0:0,-45.1545,-482.802	0/1:84:49,35:49:1743:35:1168:-80.1312,0,-131.867	0/1:29:13,16:13:459:16:556:-41.6373,0,-32.9142	0/1:50:29,21:29:1035:21:694:-47.7171,0,-78.4116	0/0:73:73,0:73:2588:0:0:0,-21.9752,-233.168	0/0:71:71,0:71:2521:0:0:0,-21.3731,-227.141	0/1:42:24,18:24:856:18:589:-40.6775,0,-64.7178	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/0:57:57,0:57:2016:0:0:0,-17.1587,-181.713	0/1:8:2,6:2:72:6:184:-14.4538,0,-4.42848	0/0:94:94,0:94:3320:0:0:0,-28.2968,-299.019	0/1:54:31,23:31:1095:23:791:-55.2503,0,-82.6035	0/1:85:28,57:28:1008:57:1958:-150.908,0,-65.4488	0/0:107:107,0:107:3831:0:0:0,-32.2102,-344.986	0/1:80:50,30:50:1779:30:1016:-67.592,0,-136.31	0/0:39:38,1:38:1344:1:36:0,-8.14189,-117.662	0/1:10:3,7:3:108:7:227:-17.7381,0,-7.06487	0/1:52:32,20:32:1148:20:699:-47.5789,0,-87.9763	0/1:25:16,9:16:572:9:303:-20.071,0,-44.2877	0/0:57:57,0:57:2017:0:0:0,-17.1587,-181.801	0/1:42:29,13:29:1044:13:436:-26.9174,0,-81.6315	0/1:50:30,20:30:1068:20:649:-43.6634,0,-81.3806	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/0:91:91,0:91:3237:0:0:0,-27.3937,-291.551	0/1:31:19,12:19:664:12:407:-27.6236,0,-50.7526	0/0:68:67,0:67:2361:0:0:0,-20.169,-212.381	0/1:70:42,28:42:1480:28:890:-59.322,0,-112.42	0/1:26:7,19:7:243:19:624:-48.6431,0,-14.3807	0/1:116:73,43:73:2612:43:1466:-97.3108,0,-200.409	0/1:37:15,22:15:513:22:740:-55.7734,0,-35.3545	0/0:69:69,0:69:2444:0:0:0,-20.7711,-220.214	0/0:59:58,0:58:2046:0:0:0,-17.4597,-184.051
chr11	31836399	.	A	G	100409	PASS	AB=0.508525;ABP=4.93543;AC=142;AF=0.755319;AN=188;AO=4774;CIGAR=1X;DP=6291;DPB=6291;DPRA=0;EPP=10334.9;EPPR=3262.48;GTI=2;LEN=1;MEANALT=1;MQM=59.9876;MQMR=60;NS=94;NUMALT=1;ODDS=1.56074;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170381;QR=53765;RO=1517;RPL=4770;RPP=10334.9;RPPR=3262.48;RPR=4;RUN=1;SAF=4774;SAP=10369.6;SAR=0;SRF=1517;SRP=3297.13;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:72:37,35:37:1324:35:1260:-92.0313,0,-97.7879	0/1:73:35,38:35:1228:38:1356:-100.365,0,-88.8487	0/1:154:64,90:64:2268:90:3187:-240.692,0,-158.025	0/1:65:37,28:37:1319:28:995:-70.2971,0,-99.4442	0/1:55:33,22:33:1161:22:792:-55.049,0,-88.2381	1/1:128:0,128:0:0:128:4564:-410.925,-38.5318,0	0/1:82:49,33:49:1735:33:1175:-81.3725,0,-131.749	0/1:84:44,40:44:1572:40:1411:-101.999,0,-116.485	1/1:113:0,113:0:0:113:4024:-362.348,-34.0164,0	0/1:33:15,18:15:540:18:633:-47.3611,0,-39.0025	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:58:29,29:29:1028:29:1044:-76.8151,0,-75.3733	1/1:71:0,71:0:0:71:2540:-228.851,-21.3731,0	1/1:50:0,50:0:0:50:1781:-160.571,-15.0515,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:33:17,16:17:604:16:563:-41.0652,0,-44.7566	0/1:41:24,17:24:864:17:604:-42.3484,0,-65.7403	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:84:0,84:0:0:84:3011:-271.22,-25.2865,0	0/1:94:49,45:49:1732:45:1607:-116.623,0,-127.868	1/1:69:0,69:0:0:69:2461:-221.743,-20.7711,0	0/1:60:25,35:25:896:35:1241:-93.9307,0,-62.8986	1/1:96:5,91:5:176:91:3255:-276.985,-12.7139,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:213:99,114:99:3495:114:4041:-299.758,0,-250.645	0/1:109:59,50:59:2088:50:1784:-128.03,0,-155.378	0/1:27:10,17:10:340:17:612:-47.2856,0,-22.8012	0/1:179:83,96:83:2933:96:3437:-255.657,0,-210.321	1/1:100:2,98:2:72:98:3478:-306.395,-23.2663,0	1/1:109:0,109:0:0:109:3916:-352.632,-32.8123,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/1:12:10,2:10:348:2:72:-3.22436,0,-28.0428	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:103:0,103:0:0:103:3667:-330.232,-31.0061,0	1/1:145:1,144:1:36:144:5143:-459.412,-40.0511,0	0/1:35:14,21:14:504:21:756:-57.8312,0,-35.162	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:75:40,35:40:1412:35:1252:-90.4078,0,-104.8	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	1/1:67:0,67:0:0:67:2393:-215.625,-20.169,0	1/1:37:1,36:1:36:36:1292:-112.985,-7.53984,0	1/1:45:0,45:0:0:45:1595:-143.84,-13.5464,0	1/1:85:0,85:0:0:85:3037:-273.559,-25.5876,0	0/1:73:32,41:32:1132:41:1438:-107.737,0,-80.2134	1/1:82:0,82:0:0:82:2927:-263.664,-24.6845,0	0/1:103:45,58:45:1596:58:2056:-154.303,0,-112.924	1/1:97:0,97:0:0:97:3462:-311.3,-29.1999,0	1/1:153:0,153:0:0:153:5482:-493.506,-46.0576,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:122:64,58:64:2253:58:2075:-150.294,0,-166.307	1/1:47:0,47:0:0:47:1667:-150.317,-14.1484,0	1/1:8:0,8:0:0:8:288:-25.8343,-2.40824,0	1/1:66:0,66:0:0:66:2329:-209.866,-19.868,0	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:17:0,17:0:0:17:577:-52.2472,-5.11751,0	0/1:44:27,17:27:960:17:612:-42.1681,0,-73.471	0/1:86:37,49:37:1316:49:1752:-132.076,0,-92.8532	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:126:0,126:0:0:126:4509:-405.976,-37.9298,0	0/1:144:67,77:67:2372:77:2768:-206.012,0,-170.391	0/1:42:21,21:21:752:21:756:-55.724,0,-55.363	0/1:47:24,23:24:860:23:828:-60.6957,0,-63.5734	1/1:151:4,147:4:136:147:5243:-459.431,-32.88,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	0/1:12:3,9:3:104:9:320:-25.53,0,-6.09045	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:81:0,81:0:0:81:2884:-259.798,-24.3834,0	0/1:16:7,9:7:237:9:320:-24.3259,0,-16.8426	1/1:86:0,86:0:0:86:3092:-278.507,-25.8886,0	0/1:23:13,10:13:459:10:360:-25.8206,0,-34.7204	0/1:209:108,101:108:3840:101:3562:-257.871,0,-282.884	1/1:141:0,141:0:0:141:5026:-452.485,-42.4452,0	0/1:71:27,44:27:968:44:1576:-120.758,0,-66.0642	1/1:46:2,44:2:72:44:1580:-135.655,-7.01066,0	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:68:41,27:41:1418:27:968:-66.9673,0,-107.444	0/1:77:42,35:42:1496:35:1260:-90.5262,0,-111.755	1/1:177:0,177:0:0:177:6290:-566.193,-53.2823,0	0/1:75:39,36:39:1388:36:1288:-93.6463,0,-102.642	0/1:32:14,18:14:496:18:640:-48.2964,0,-35.3413	1/1:49:0,49:0:0:49:1744:-157.244,-14.7505,0	1/1:83:2,81:2:72:81:2896:-254.04,-18.1488,0	0/1:33:17,16:17:612:16:576:-42.241,0,-45.4794	1/1:46:0,46:0:0:46:1631:-147.078,-13.8474,0	0/1:41:20,21:20:704:21:756:-56.025,0,-51.3423	0/1:22:8,14:8:275:14:492:-37.9897,0,-18.4608	0/1:89:39,50:39:1396:50:1796:-135.131,0,-99.1474	0/1:31:20,11:20:712:11:392:-26.2881,0,-55.0747	1/1:53:1,52:1:32:52:1872:-165.56,-12.7553,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0
chr11	31857907	.	C	T	34165.8	PASS	AB=0.492852;ABP=4.84187;AC=47;AF=0.25;AN=188;AO=2040;CIGAR=1X;DP=8086;DPB=8086;DPRA=1.10707;EPP=4432.81;EPPR=13127.4;GTI=1;LEN=1;MEANALT=1.02;MQM=59.9525;MQMR=60;NS=94;NUMALT=1;ODDS=3.01395;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73015;QR=215898;RO=6044;RPL=0;RPP=4432.81;RPPR=13127.4;RPR=2040;RUN=1;SAF=2040;SAP=4432.81;SAR=0;SRF=6044;SRP=13127.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:84:84,0:84:2987:0:0:0,-25.2865,-269.063	0/1:56:27,29:27:964:29:1040:-77.0561,0,-70.2191	0/1:182:108,74:108:3851:74:2638:-182.862,0,-291.999	0/1:146:71,75:71:2536:75:2688:-198.214,0,-184.541	0/1:41:21,20:21:752:20:720:-52.7865,0,-55.664	0/1:34:14,20:14:496:20:712:-54.1716,0,-34.7392	0/0:153:153,0:153:5469:0:0:0,-46.0576,-492.337	0/1:105:64,41:64:2276:41:1472:-101.168,0,-173.494	0/1:152:80,72:80:2852:72:2560:-184.887,0,-211.162	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:119:50,69:50:1788:69:2466:-186.371,0,-125.38	0/0:156:156,0:156:5566:0:0:0,-46.9607,-501.065	0/1:105:52,53:52:1860:53:1885:-138.318,0,-136.071	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.978	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.501	0/0:98:98,0:98:3507:0:0:0,-29.5009,-315.84	0/1:42:23,19:23:824:19:680:-48.8859,0,-61.8401	0/1:57:24,33:24:855:33:1188:-90.0699,0,-60.1115	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:96:95,0:95:3385:0:0:0,-28.5978,-304.505	0/1:118:72,46:72:2572:46:1648:-113.087,0,-196.208	0/0:56:56,0:56:1988:0:0:0,-16.8577,-179.194	0/1:101:48,53:48:1720:53:1896:-140.513,0,-124.681	0/0:56:54,2:54:1928:2:72:0,-10.021,-166.96	0/0:105:105,0:105:3752:0:0:0,-31.6081,-337.881	0/1:163:69,94:69:2456:94:3368:-254.268,0,-172.227	0/1:211:102,109:102:3656:109:3904:-288.036,0,-265.726	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	0/1:181:85,96:85:3027:96:3438:-255.147,0,-218.175	0/0:80:80,0:80:2852:0:0:0,-24.0824,-256.919	0/0:106:106,0:106:3765:0:0:0,-31.9092,-339.05	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	0/1:25:11,14:11:388:14:504:-38.1723,0,-27.7316	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:207:207,0:207:7412:0:0:0,-62.3132,-667.126	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:67:38,28:38:1349:28:1008:-70.8085,0,-101.481	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:106:57,49:57:2027:49:1760:-126.757,0,-150.793	0/0:39:39,0:39:1391:0:0:0,-11.7402,-125.488	0/0:157:157,0:157:5620:0:0:0,-47.2617,-505.922	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.832	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.346	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/1:114:53,61:53:1900:61:2188:-162.868,0,-136.96	0/0:94:94,0:94:3360:0:0:0,-28.2968,-302.617	0/1:86:35,51:35:1244:51:1832:-139.272,0,-86.3761	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.939	0/0:84:84,0:84:2992:0:0:0,-25.2865,-269.513	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:145:87,58:87:3116:58:2076:-143.461,0,-237.017	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.937	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:15:11,4:11:396:4:140:-8.42913,0,-31.4673	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:88:34,54:34:1216:54:1932:-147.666,0,-83.2559	0/1:103:54,49:54:1936:49:1755:-127.227,0,-143.51	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/1:114:72,42:72:2564:42:1508:-101.697,0,-196.693	0/1:70:47,23:47:1688:23:824:-53.4112,0,-131.135	0/1:53:20,33:20:716:33:1176:-90.1932,0,-48.8131	0/0:155:155,0:155:5528:0:0:0,-46.6596,-497.648	0/0:167:166,1:166:5928:1:36:0,-46.6737,-530.032	0/1:80:40,40:40:1427:40:1440:-105.815,0,-104.644	0/0:87:87,0:87:3104:0:0:0,-26.1896,-279.588	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/1:22:13,9:13:464:9:324:-22.8832,0,-35.4748	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:76:33,43:33:1180:43:1533:-115.384,0,-83.6298	0/1:182:91,91:91:3224:91:3258:-238.512,0,-235.598	0/0:118:118,0:118:4224:0:0:0,-35.5215,-380.34	0/1:90:50,40:50:1784:40:1432:-102.085,0,-133.75	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.797	0/1:25:9,16:9:312:16:576:-44.6492,0,-20.8896	0/1:91:39,52:39:1392:52:1856:-139.926,0,-98.1853	0/1:80:38,42:38:1360:42:1512:-112.292,0,-98.6182	0/0:215:215,0:215:7692:0:0:0,-64.7214,-692.315	0/1:70:34,36:34:1220:36:1288:-95.1515,0,-89.0347	0/1:89:51,38:51:1832:38:1351:-95.0979,0,-138.369	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:155:152,3:152:5417:3:108:0,-36.5845,-477.586	0/1:29:13,16:13:456:16:562:-42.1779,0,-32.6434	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.286	0/1:85:44,41:44:1558:41:1468:-106.806,0,-114.923	0/1:93:43,50:43:1540:50:1781:-132.576,0,-110.897	0/1:180:106,74:106:3787:74:2648:-184.381,0,-286.843	0/1:68:20,48:20:716:48:1720:-134.615,0,-44.2977	0/0:96:96,0:96:3432:0:0:0,-28.8989,-309.094	0/0:129:129,0:129:4620:0:0:0,-38.8329,-415.963
chr11	31861829	.	G	T	210050	PASS	AB=0.502779;ABP=3.34822;AC=139;AF=0.739362;AN=188;AO=7795;CIGAR=1X;DP=10339;DPB=10339;DPRA=18.7083;EPP=16912.3;EPPR=5501.19;GTI=1;LEN=1;MEANALT=1.04348;MQM=59.9792;MQMR=59.9953;NS=94;NUMALT=1;ODDS=1.68667;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=277876;QR=90436;RO=2540;RPL=3854;RPP=5.11881;RPPR=23.2854;RPR=3941;RUN=1;SAF=3856;SAP=4.92939;SAR=3939;SRF=1195;SRP=22.2458;SRR=1345;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:73:0,73:0:0:73:2604:-234.609,-21.9752,0	0/1:77:40,37:40:1421:37:1315:-95.4717,0,-105.006	0/1:169:88,81:88:3148:81:2896:-210.002,0,-232.672	0/1:205:105,99:105:3767:99:3529:-256.163,0,-277.574	0/1:68:31,37:31:1107:37:1319:-98.5411,0,-79.4701	0/1:53:24,29:24:856:29:1036:-77.5993,0,-61.4065	1/1:122:0,122:0:0:122:4324:-389.289,-36.7257,0	0/1:145:84,61:84:3000:61:2192:-153.896,0,-226.583	0/1:160:87,73:87:3085:73:2574:-183.745,0,-229.711	1/1:108:0,108:0:0:108:3874:-348.854,-32.5112,0	0/1:97:55,42:55:1955:42:1496:-105.735,0,-147.025	1/1:231:0,230:0:0:230:8195:-737.207,-69.2369,0	0/1:161:78,83:78:2779:83:2957:-217.898,0,-201.885	1/1:160:0,160:0:0:160:5705:-513.568,-48.1648,0	1/1:158:0,158:0:0:158:5618:-505.742,-47.5627,0	1/1:153:0,153:0:0:153:5483:-493.596,-46.0576,0	0/1:93:48,45:48:1702:45:1608:-117.014,0,-125.469	0/1:77:37,40:37:1324:40:1407:-103.744,0,-96.2828	1/1:80:0,80:0:0:80:2857:-257.366,-24.0824,0	1/1:131:0,131:0:0:131:4688:-422.081,-39.4349,0	0/1:198:98,100:98:3516:100:3570:-261.901,0,-257.045	1/1:66:0,66:0:0:66:2359:-212.567,-19.868,0	0/1:137:68,69:68:2432:69:2457:-180.142,0,-177.895	1/1:91:8,83:8:279:83:2954:-240.645,-1.9462,0	1/1:76:0,76:0:0:76:2701:-243.332,-22.8783,0	0/1:189:96,93:96:3391:93:3294:-239.784,0,-248.508	0/1:170:98,72:98:3503:72:2563:-179.745,0,-264.305	0/1:76:35,40:35:1239:40:1436:-106.688,0,-88.9641	0/1:180:86,94:86:3043:94:3361:-248.519,0,-219.914	1/1:99:6,93:6:216:93:3299:-277.329,-10.0115,0	1/1:99:0,99:0:0:99:3508:-315.93,-29.802,0	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:12:0,12:0:0:12:416:-37.7655,-3.61236,0	1/1:286:0,286:0:0:286:10218:-919.55,-86.0946,0	1/1:101:0,101:0:0:101:3605:-324.655,-30.404,0	0/1:94:51,43:51:1802:43:1536:-110.236,0,-134.161	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:129:73,55:73:2570:55:1976:-139.223,0,-192.657	1/1:62:0,62:0:0:62:2207:-198.895,-18.6639,0	1/1:153:0,153:0:0:153:5467:-492.158,-46.0576,0	1/1:133:0,133:0:0:133:4736:-426.399,-40.037,0	1/1:141:0,141:0:0:141:5048:-454.465,-42.4452,0	1/1:80:1,79:1:36:79:2828:-251.161,-20.4841,0	0/1:73:37,36:37:1313:36:1273:-92.8957,0,-96.4945	1/1:122:0,122:0:0:122:4311:-388.167,-36.7257,0	0/1:81:42,39:42:1500:39:1396:-101.556,0,-110.911	1/1:118:0,118:0:0:118:4196:-377.82,-35.5215,0	1/1:87:0,87:0:0:87:3112:-280.307,-26.1896,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:123:58,65:58:2064:65:2323:-172.303,0,-149.005	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:145:0,145:0:0:145:5141:-462.833,-43.6494,0	1/1:51:1,50:1:36:50:1785:-157.332,-11.7543,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:108:48,60:48:1716:60:2152:-161.436,0,-122.214	0/1:174:84,90:84:2982:90:3213:-237.013,0,-216.234	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:163:0,163:0:0:163:5809:-522.924,-49.0679,0	0/1:150:71,79:71:2527:79:2831:-209.873,0,-182.527	0/1:73:28,45:28:995:45:1608:-123.035,0,-67.8888	0/1:84:26,58:26:914:58:2051:-159.548,0,-57.2881	1/1:167:0,167:0:0:167:5964:-536.866,-50.272,0	1/1:151:0,151:0:0:151:5366:-483.071,-45.4555,0	0/1:90:42,48:42:1512:48:1720:-127.993,0,-109.282	1/1:70:0,70:0:0:70:2492:-224.531,-21.0721,0	1/1:73:0,73:0:0:73:2611:-235.238,-21.9752,0	0/1:13:3,10:3:104:10:360:-28.8309,0,-5.78942	1/1:91:0,91:0:0:91:3232:-291.104,-27.3937,0	0/1:141:69,72:69:2441:72:2576:-189.644,0,-177.499	0/1:190:83,107:83:2949:107:3832:-287.809,0,-208.447	1/1:165:3,162:3:108:162:5779:-510.15,-39.5948,0	0/1:110:56,54:56:1965:54:1936:-141.403,0,-144.007	1/1:104:0,104:0:0:104:3732:-336.08,-31.3071,0	0/1:13:4,9:4:144:9:324:-25.5925,0,-9.40023	0/1:96:42,54:42:1499:54:1917:-143.906,0,-106.305	0/1:133:50,83:50:1800:83:2940:-224.797,0,-122.245	1/1:145:0,145:0:0:145:5139:-462.654,-43.6494,0	0/1:122:66,56:66:2368:56:2008:-144.268,0,-176.652	0/1:148:72,76:72:2588:76:2712:-199.772,0,-188.616	1/1:120:0,120:0:0:120:4269:-384.388,-36.1236,0	1/1:216:5,211:5:180:211:7517:-660.018,-48.4704,0	0/1:52:27,25:27:955:25:892:-64.9461,0,-70.6113	1/1:150:1,149:1:36:149:5301:-473.628,-41.5562,0	0/1:158:81,77:81:2861:77:2722:-197.661,0,-210.154	0/1:99:47,52:47:1688:52:1841:-136.166,0,-122.405	0/1:156:78,78:78:2772:78:2767:-202.31,0,-202.759	0/1:155:100,55:100:3568:55:1968:-130.735,0,-274.666	1/1:206:0,206:0:0:206:7375:-663.794,-62.0122,0	1/1:245:1,244:1:36:244:8691:-778.588,-70.1541,0
chr11	31862276	.	C	T	412125	PASS	AB=0.49107;ABP=10.4567;AC=139;AF=0.747312;AN=186;AO=15365;CIGAR=1X;DP=20871;DPB=20871;DPRA=0;EPP=33341.6;EPPR=11957;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.9942;MQMR=59.9989;NS=93;NUMALT=1;ODDS=3.05337;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=547612;QR=195572;RO=5505;RPL=8357;RPP=260.195;RPPR=130.719;RPR=7008;RUN=1;SAF=8358;SAP=260.958;SAR=7007;SRF=3037;SRP=130.719;SRR=2468;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:123:0,123:0:0:123:4387:-395.004,-37.0267,0	0/1:290:149,141:149:5281:141:4985:-361.502,0,-388.129	0/1:336:170,166:170:6012:166:5924:-432.122,0,-440.046	0/1:575:272,303:272:9645:303:10835:-801.958,0,-694.916	0/1:141:69,72:69:2465:72:2560:-188.203,0,-179.657	0/1:55:25,30:25:896:30:1072:-80.2358,0,-64.4037	1/1:248:0,248:0:0:248:8861:-797.476,-74.6554,0	0/1:348:178,170:178:6338:170:6029:-437.957,0,-465.756	0/1:210:114,96:114:4072:96:3422:-244.976,0,-303.451	1/1:247:1,246:1:36:246:8786:-787.131,-70.7561,0	0/1:161:76,85:76:2719:85:3044:-225.724,0,-196.487	1/1:240:0,240:0:0:240:8579:-772.106,-72.2472,0	0/1:199:94,105:94:3329:105:3742:-277.076,0,-239.924	1/1:186:0,186:0:0:186:6642:-597.859,-55.9916,0	1/1:205:0,205:0:0:205:7327:-659.481,-61.7112,0	1/1:161:0,161:0:0:161:5688:-512.044,-48.4658,0	0/1:154:80,74:80:2823:74:2651:-192.477,0,-207.95	0/1:133:64,69:64:2272:69:2448:-180.536,0,-164.706	1/1:122:0,122:0:0:122:4345:-391.225,-36.7257,0	1/1:396:0,396:0:0:396:14116:-1270.21,-119.208,0	0/1:295:133,162:133:4704:162:5736:-427.558,0,-334.717	1/1:215:0,215:0:0:215:7676:-690.875,-64.7215,0	0/1:190:105,85:105:3730:85:3052:-217.713,0,-278.704	0/1:207:20,187:20:716:187:6697:-540.492,0,-2.45451	1/1:233:2,231:2:68:231:8230:-734.255,-63.6823,0	0/1:577:287,290:287:10205:290:10351:-757.818,0,-744.687	0/1:670:365,305:365:13032:305:10900:-779.209,0,-971	0/1:91:48,43:48:1712:43:1536:-111.139,0,-126.972	0/1:771:401,370:401:14267:370:13203:-955.98,0,-1051.7	1/1:274:3,271:3:104:271:9682:-861.628,-72.7794,0	1/1:330:5,325:5:180:325:11576:-1025.16,-82.7878,0	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/1:43:28,15:28:1004:15:525:-34.6338,0,-77.7316	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:495:0,495:0:0:495:17665:-1589.46,-149.01,0	1/1:241:1,240:1:36:240:8532:-764.283,-68.95,0	0/1:136:70,66:70:2462:66:2355:-171.268,0,-180.892	.:.:.:.:.:.:.:.	0/1:277:132,145:132:4700:145:5152:-380.433,0,-339.775	1/1:76:0,76:0:0:76:2716:-244.684,-22.8783,0	1/1:238:0,238:0:0:238:8450:-760.504,-71.6451,0	1/1:184:0,184:0:0:184:6556:-590.124,-55.3895,0	1/1:173:0,173:0:0:173:6175:-555.847,-52.0782,0	1/1:211:0,211:0:0:211:7526:-677.381,-63.5173,0	0/1:369:220,149:220:7749:149:5297:-365.787,0,-586.37	1/1:417:1,416:1:36:416:14863:-1333.8,-121.931,0	0/1:260:128,132:128:4539:132:4697:-344.625,0,-330.411	1/1:328:2,326:2:72:326:11588:-1035.96,-91.9011,0	1/1:305:1,304:1:36:304:10809:-969.123,-88.2159,0	1/1:23:0,23:0:0:23:817:-73.8515,-6.92369,0	0/1:318:189,129:189:6712:129:4593:-317.808,0,-508.43	1/1:81:1,80:1:36:80:2848:-252.959,-20.7852,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:259:2,257:2:72:257:9170:-818.436,-71.13,0	1/1:143:2,141:2:72:141:5044:-447.267,-36.2106,0	0/1:21:12,9:12:423:9:324:-23.1842,0,-32.0834	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:170:96,74:96:3444:74:2610:-183.971,0,-258.997	0/1:287:150,137:150:5362:137:4903:-355.025,0,-396.316	1/1:17:0,17:0:0:17:591:-53.5153,-5.11751,0	1/1:420:0,420:0:0:420:14972:-1347.21,-126.433,0	0/1:382:213,169:213:7549:169:5985:-423.766,0,-564.458	0/1:167:85,82:85:3032:82:2921:-212.852,0,-222.839	0/1:183:94,89:94:3345:89:3179:-231.245,0,-246.178	1/1:403:4,399:4:131:399:14205:-1266.1,-109.202,0	1/1:233:3,230:3:108:230:8180:-726.14,-60.0648,0	0/1:93:52,41:52:1855:41:1461:-103.788,0,-139.233	1/1:158:0,158:0:0:158:5638:-507.54,-47.5627,0	1/1:154:0,154:0:0:154:5512:-496.205,-46.3586,0	0/1:35:20,15:20:720:15:521:-36.6803,0,-54.5927	1/1:185:0,185:0:0:185:6596:-593.721,-55.6906,0	0/1:153:87,66:87:3094:66:2347:-165.431,0,-232.628	0/1:332:177,155:177:6321:155:5495:-394.737,0,-469.04	1/1:382:0,382:0:0:382:13608:-1224.51,-114.993,0	0/1:327:150,177:150:5322:177:6292:-467.902,0,-380.679	1/1:244:0,244:0:0:244:8705:-783.444,-73.4513,0	0/1:21:5,16:5:180:16:572:-45.4918,0,-10.2304	0/1:273:145,128:145:5149:128:4553:-327.757,0,-381.368	0/1:337:169,167:169:5964:167:5953:-434.371,0,-435.367	1/1:460:0,460:0:0:460:16315:-1468.03,-138.474,0	0/1:178:103,75:103:3658:75:2677:-187.59,0,-275.842	0/1:159:71,88:71:2497:88:3148:-235.682,0,-177.119	1/1:188:1,187:1:36:187:6659:-595.791,-52.9954,0	1/1:341:1,340:1:36:340:12146:-1089.39,-99.053,0	0/1:74:38,36:38:1356:36:1292:-94.3075,0,-100.064	1/1:169:2,167:2:72:167:5934:-527.334,-44.0373,0	0/1:181:87,94:87:3085:94:3368:-248.849,0,-223.392	0/1:100:41,59:41:1472:59:2112:-160.246,0,-102.673	0/1:212:108,104:108:3837:104:3699:-269.294,0,-281.709	0/1:240:145,95:145:5104:95:3372:-231.446,0,-387.259	1/1:217:1,216:1:36:216:7712:-690.515,-61.7252,0	1/1:296:2,294:2:72:294:10507:-938.709,-82.2682,0
chr11	31862943	.	C	T	42485.2	PASS	AB=0.479961;ABP=17.1961;AC=49;AF=0.260638;AN=188;AO=1963;CIGAR=1X;DP=8189;DPB=8189;DPRA=1.11891;EPP=4265.61;EPPR=13500.9;GTI=2;LEN=1;MEANALT=1.01961;MQM=59.9358;MQMR=59.9863;NS=94;NUMALT=1;ODDS=0.693937;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69866;QR=221253;RO=6224;RPL=588;RPP=688.157;RPPR=3269.85;RPR=1375;RUN=1;SAF=588;SAP=688.157;SAR=1375;SRF=1582;SRP=3269.85;SRR=4642;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.19	0/1:102:56,46:56:1989:46:1625:-115.832,0,-148.577	0/1:183:90,93:90:3197:93:3306:-242.671,0,-232.865	0/1:191:99,92:99:3515:92:3250:-235.218,0,-259.065	0/1:88:40,48:40:1419:48:1699:-126.704,0,-101.516	0/1:87:30,57:30:1063:57:2037:-157.412,0,-69.7899	0/0:78:78,0:78:2727:0:0:0,-23.4803,-245.671	0/1:161:83,78:83:2907:78:2800:-203.762,0,-213.398	0/1:121:59,62:59:2055:62:2160:-158.237,0,-148.165	0/0:66:66,0:66:2332:0:0:0,-19.868,-210.138	0/1:28:24,4:24:860:4:144:-4.88478,0,-69.293	0/0:88:88,0:88:3124:0:0:0,-26.4906,-281.386	0/1:67:38,29:38:1338:29:1044:-74.1058,0,-100.549	0/0:50:50,0:50:1777:0:0:0,-15.0515,-160.211	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:50:50,0:50:1774:0:0:0,-15.0515,-159.942	0/1:48:26,22:26:924:22:776:-55.7127,0,-69.0282	0/1:39:15,24:15:536:24:864:-66.3424,0,-36.8346	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:148:148,0:148:5278:0:0:0,-44.5524,-475.157	0/1:151:72,79:72:2566:79:2832:-209.658,0,-185.733	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/1:71:36,35:36:1296:35:1243:-90.8007,0,-95.5708	0/0:83:83,0:83:2924:0:0:0,-24.9855,-263.392	0/0:75:75,0:75:2662:0:0:0,-22.5772,-239.826	0/1:267:145,122:145:5158:122:4339:-310.299,0,-383.986	0/1:164:84,80:84:2983:80:2863:-208.538,0,-219.334	0/1:25:10,15:10:360:15:536:-41.0491,0,-25.2186	0/1:200:104,96:104:3719:96:3397:-245.712,0,-274.705	0/0:92:92,0:92:3233:0:0:0,-27.6948,-291.189	0/0:128:128,0:128:4560:0:0:0,-38.5318,-410.566	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:10:5,4:5:180:4:144:-10.2449,0,-13.4834	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:183:183,0:183:6534:0:0:0,-55.0885,-588.14	0/0:106:106,0:106:3787:0:0:0,-31.9092,-341.029	0/1:42:24,18:24:860:18:644:-45.6473,0,-65.0786	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:148:81,67:81:2908:67:2359:-168.012,0,-217.403	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:148:148,0:148:5263:0:0:0,-44.5524,-473.807	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/0:59:59,0:59:2043:0:0:0,-17.7608,-184.137	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/1:116:54,62:54:1936:62:2209:-164.154,0,-139.596	0/0:172:172,0:172:6151:0:0:0,-51.7772,-553.688	0/1:79:44,35:44:1562:35:1260:-89.9241,0,-117.089	0/0:98:97,1:97:3472:1:36:0,-25.9027,-309.094	0/0:104:104,0:104:3732:0:0:0,-31.3071,-336.08	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/1:108:49,59:49:1751:59:2103:-157.027,0,-125.362	0/0:65:65,0:65:2273:0:0:0,-19.5669,-204.827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:154:154,0:154:5483:0:0:0,-46.3586,-493.598	0/0:63:63,0:63:2214:0:0:0,-18.9649,-199.522	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/1:68:50,18:50:1787:18:624:-36.0117,0,-140.642	0/1:93:54,39:54:1914:39:1392:-97.5832,0,-144.54	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:245:244,1:244:8740:1:36:0,-70.1541,-782.988	0/1:142:78,64:78:2781:64:2285:-163.145,0,-207.783	0/1:74:45,29:45:1581:29:1020:-69.8332,0,-120.302	0/1:55:26,29:26:932:29:1044:-77.7182,0,-67.6422	0/0:127:127,0:127:4513:0:0:0,-38.2308,-406.34	0/0:128:128,0:128:4557:0:0:0,-38.5318,-410.297	0/1:19:7,12:7:248:12:428:-33.1392,0,-16.9446	0/0:74:74,0:74:2618:0:0:0,-22.2762,-235.868	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:16:10,6:10:328:6:208:-14.2383,0,-25.0206	0/0:85:85,0:85:3013:0:0:0,-25.5875,-271.401	0/1:91:43,48:43:1523:48:1724:-128.041,0,-109.969	0/1:181:104,77:104:3699:77:2752:-193.435,0,-278.627	0/0:150:150,0:150:5363:0:0:0,-45.1545,-482.802	0/1:205:108,97:108:3829:97:3467:-250.461,0,-283.095	0/0:106:105,1:105:3735:1:36:0,-28.3109,-332.751	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:110:50,60:50:1792:60:2152:-160.834,0,-128.449	0/1:91:39,52:39:1396:52:1834:-137.945,0,-98.5454	0/0:212:212,0:212:7544:0:0:0,-63.8184,-679.002	0/1:70:31,39:31:1108:39:1396:-104.867,0,-78.9589	0/1:75:45,30:45:1596:30:1076:-74.5756,0,-121.353	0/0:58:58,0:58:2055:0:0:0,-17.4597,-185.221	0/0:147:146,1:146:5208:1:36:0,-40.6531,-465.263	0/1:24:9,15:9:324:15:527:-40.5355,0,-22.2811	0/0:70:70,0:70:2424:0:0:0,-21.0721,-218.414	0/1:55:30,25:30:1076:25:879:-62.8701,0,-80.5962	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6511	0/1:73:54,19:54:1905:19:673:-38.9215,0,-149.751	0/1:82:31,51:31:1101:51:1823:-139.666,0,-74.7139	0/0:164:164,0:164:5865:0:0:0,-49.3689,-527.104	0/0:110:109,0:109:3839:0:0:0,-32.8123,-345.347
chr11	31890350	.	T	C	4353.57	PASS	AB=0.225518;ABP=1392.95;AC=45;AF=0.239362;AN=188;AO=498;CIGAR=1X;DP=4012;DPB=4012;DPRA=1.42384;EPP=1084.4;EPPR=7631.39;GTI=15;LEN=1;MEANALT=1.02083;MQM=59.9317;MQMR=59.9872;NS=94;NUMALT=1;ODDS=1.1979;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=17814;QR=125386;RO=3513;RPL=498;RPP=1084.4;RPPR=7631.39;RPR=0;RUN=1;SAF=0;SAP=1084.4;SAR=498;SRF=0;SRP=7631.39;SRR=3513;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:144:111,33:111:3954:33:1176:-62.7994,0,-312.701	0/1:30:25,5:25:896:5:176:-7.15412,0,-71.9295	0/1:76:58,18:58:2065:18:648:-35.7736,0,-163.241	0/1:37:30,7:30:1068:7:252:-11.8908,0,-85.294	0/1:24:17,7:17:604:7:252:-15.8042,0,-47.4659	0/0:43:43,0:43:1525:0:0:0,-12.9443,-137.541	0/1:82:71,11:71:2512:11:396:-11.2983,0,-201.646	0/1:27:19,8:19:650:8:288:-18.1372,0,-50.6886	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/1:42:34,8:34:1220:8:288:-13.6241,0,-97.4635	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:21:19,2:19:676:2:72:-0.515093,0,-54.8464	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/1:51:45,6:45:1605:6:216:-4.43798,0,-129.386	0/1:29:26,3:26:932:3:104:-0.972935,0,-75.469	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.646	0/1:58:44,14:44:1572:14:504:-28.2384,0,-124.312	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.155	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7675	0/1:143:117,26:117:4173:26:928:-40.791,0,-332.705	0/1:88:71,17:71:2544:17:608:-28.5614,0,-202.72	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:136:114,22:114:4065:22:792:-30.6656,0,-325.096	0/0:98:97,1:97:3461:1:36:0,-25.9027,-308.103	0/0:49:48,1:48:1712:1:36:0,-11.1522,-150.767	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:17:3,13:3:108:13:468:-37.2833,0,-4.89886	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:17:4,13:4:144:13:464:-36.98,0,-8.19611	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/0:63:63,0:63:2268:0:0:0,-18.9649,-203.755	0/1:61:44,17:44:1580:17:612:-37.0506,0,-124.129	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/1:110:96,14:96:3424:14:489:-11.2256,0,-275.262	0/0:21:21,0:21:741:0:0:0,-6.32163,-67.0116	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.835	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:73:72,1:72:2572:1:21:0,-19.8752,-229.63	0/1:48:36,12:36:1280:12:424:-23.7741,0,-101.054	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.763	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:91:78,13:78:2788:13:468:-15.0659,0,-223.767	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:47:47,0:47:1677:0:0:0,-14.1484,-151.215	0/0:8:8,0:8:273:0:0:0,-2.40824,-24.9002	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/0:22:22,0:22:773:0:0:0,-6.62266,-69.8895	0/1:40:35,5:35:1237:5:180:-4.51087,0,-99.5911	0/1:63:51,12:51:1836:12:432:-20.2563,0,-146.556	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:73:59,14:59:2086:14:504:-23.7229,0,-166.031	0/1:31:27,4:27:957:4:144:-3.98169,0,-77.1119	0/1:23:18,5:18:640:5:180:-9.62837,0,-51.0056	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.077	0/1:28:20,8:20:720:8:288:-17.8386,0,-56.6999	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:58:58,0:58:2065:0:0:0,-17.4597,-186.119	0/1:24:16,8:16:576:8:280:-18.3146,0,-44.9503	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:30:27,3:27:942:3:108:-1.04427,0,-76.0589	0/1:73:54,19:54:1921:19:680:-39.554,0,-151.19	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/1:50:41,9:41:1468:9:320:-14.0909,0,-117.365	0/0:64:64,0:64:2273:0:0:0,-19.2659,-204.831	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:38:32,6:32:1152:6:216:-8.35137,0,-92.551	0/1:18:14,4:14:496:4:136:-7.157,0,-39.5557	0/0:44:44,0:44:1564:0:0:0,-13.2453,-141.052	0/0:41:38,3:38:1368:3:108:0,-2.26706,-113.346	0/1:27:24,3:24:864:3:108:-1.94736,0,-69.9548	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:33:33,0:33:1176:0:0:0,-9.93399,-106.148	0/1:18:13,5:13:468:5:176:-10.7663,0,-37.0411	0/1:46:30,16:30:1080:16:568:-37.6045,0,-83.6659	0/1:131:79,52:79:2815:52:1872:-129.324,0,-214.155	0/1:35:20,15:20:716:15:540:-38.4005,0,-54.2317	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134
chr11	31902525	.	A	T	189181	PASS	AB=0.57666;ABP=256.703;AC=142;AF=0.755319;AN=188;AO=8869;CIGAR=1X;DP=10999;DPB=10999;DPRA=0;EPP=19261.8;EPPR=4595.69;GTI=2;LEN=1;MEANALT=1.06383;MQM=59.761;MQMR=59.9223;NS=94;NUMALT=1;ODDS=4.17323;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=317337;QR=75831;RO=2123;RPL=8869;RPP=19261.8;RPPR=4613.05;RPR=0;RUN=1;SAF=0;SAP=19261.8;SAR=8869;SRF=2;SRP=4595.69;SRR=2121;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,57:0:0:57:2037:-183.592,-17.1587,0	0/1:105:43,62:43:1540:62:2207:-167.277,0,-107.285	0/1:138:61,77:61:2188:77:2749:-206.003,0,-155.37	0/1:207:73,134:73:2605:134:4793:-368.981,0,-172.383	0/1:41:14,27:14:500:27:972:-75.4557,0,-32.9939	0/1:91:45,46:45:1616:46:1637:-120.223,0,-118.336	1/1:212:1,211:1:36:211:7576:-678.269,-60.2201,0	0/1:183:92,91:92:3281:91:3260:-238.059,0,-239.642	0/1:156:81,75:81:2904:75:2685:-192.7,0,-214.635	1/1:180:0,180:0:0:180:6442:-579.821,-54.1854,0	0/1:45:31,14:31:1108:14:504:-32.1517,0,-86.4842	1/1:85:0,85:0:0:85:3007:-270.833,-25.5876,0	0/1:91:49,42:49:1741:42:1503:-108.163,0,-129.574	1/1:82:0,82:0:0:82:2938:-264.564,-24.6845,0	1/1:102:0,102:0:0:102:3668:-330.322,-30.7051,0	1/1:80:0,80:0:0:80:2861:-257.708,-24.0824,0	0/1:68:31,37:31:1112:37:1328:-99.3489,0,-79.2931	0/1:84:39,45:39:1396:45:1616:-120.422,0,-100.653	1/1:36:0,36:0:0:36:1296:-116.94,-10.8371,0	1/1:361:0,361:0:0:361:12923:-1162.76,-108.672,0	0/1:208:85,123:85:3017:123:4378:-331.471,0,-209.147	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	0/1:90:38,52:38:1364:52:1868:-141.306,0,-95.9495	1/1:185:6,179:6:212:179:6432:-559.51,-36.2658,0	1/1:89:0,89:0:0:89:3186:-286.959,-26.7917,0	0/1:386:175,210:175:6246:210:7490:-557.842,0,-445.976	0/1:281:110,171:110:3937:171:6133:-466.901,0,-269.931	0/1:49:24,25:24:864:25:900:-66.5456,0,-63.3321	0/1:299:98,201:98:3516:201:7167:-555.072,0,-226.641	1/1:132:6,126:6:212:126:4505:-386.134,-20.3112,0	1/1:165:2,163:2:72:163:5854:-519.812,-42.8332,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:238:0,238:0:0:238:8540:-768.584,-71.6451,0	1/1:216:0,216:0:0:216:7735:-695.959,-65.0225,0	0/1:83:36,47:36:1296:47:1692:-127.572,0,-91.9551	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:171:56,115:56:2008:115:4132:-320.402,0,-129.517	1/1:32:0,32:0:0:32:1136:-102.546,-9.63296,0	1/1:177:0,177:0:0:177:6306:-567.621,-53.2823,0	1/1:90:0,90:0:0:90:3240:-291.816,-27.0927,0	1/1:91:0,91:0:0:91:3272:-294.697,-27.3937,0	1/1:163:0,163:0:0:163:5829:-524.653,-49.0679,0	0/1:135:59,76:59:2120:76:2732:-205.441,0,-150.429	1/1:220:1,219:1:36:219:7814:-699.628,-62.6283,0	0/1:110:40,70:40:1436:70:2493:-190.95,0,-96.422	1/1:173:0,173:0:0:173:6224:-559.964,-52.0782,0	1/1:245:0,243:0:0:243:8718:-784.222,-73.1503,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:130:54,76:54:1913:76:2690:-203.197,0,-133.312	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	1/1:163:0,163:0:0:163:5818:-523.72,-49.0679,0	1/1:67:0,67:0:0:67:2404:-216.612,-20.169,0	0/1:8:5,3:5:165:3:108:-7.66693,0,-12.7654	1/1:33:0,33:0:0:33:1188:-107.22,-9.93399,0	0/1:82:36,46:36:1280:46:1652:-124.281,0,-90.8188	0/1:124:53,71:53:1900:71:2536:-191.161,0,-133.95	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:201:0,200:0:0:200:7161:-644.093,-60.206,0	0/1:222:90,132:90:3217:132:4695:-355.876,0,-222.922	0/1:65:26,39:26:932:39:1385:-105.379,0,-64.6319	0/1:93:27,66:27:949:66:2349:-183.667,0,-57.727	1/1:212:0,212:0:0:212:7542:-677.752,-63.8184,0	1/1:117:1,116:1:36:116:4172:-372.025,-31.6222,0	0/1:43:23,20:23:828:20:720:-52.1829,0,-61.8998	1/1:136:0,136:0:0:136:4849:-436.544,-40.9401,0	1/1:114:0,113:0:0:113:4056:-364.866,-34.0164,0	0/1:20:12,8:12:417:8:288:-20.2468,0,-31.8396	1/1:131:0,131:0:0:131:4681:-421.297,-39.4349,0	0/1:70:24,46:24:864:46:1618:-124.8,0,-57.0105	0/1:194:76,118:76:2698:118:4210:-320.457,0,-184.661	1/1:181:0,181:0:0:181:6494:-584.468,-54.4864,0	0/1:77:32,45:32:1144:45:1620:-122.472,0,-80.0902	1/1:102:0,102:0:0:102:3630:-326.895,-30.7051,0	0/1:9:5,4:5:180:4:144:-10.6034,0,-13.8428	0/1:98:23,75:23:816:75:2658:-209.96,0,-44.19	0/1:89:23,66:23:790:66:2372:-186.936,0,-44.6193	1/1:419:0,419:0:0:419:14996:-1349.28,-126.132,0	0/1:118:59,58:59:2116:58:2073:-151.256,0,-155.115	0/1:99:52,47:52:1842:47:1677:-121.411,0,-136.254	1/1:107:0,107:0:0:107:3847:-346.417,-32.2102,0	1/1:155:1,154:1:36:154:5525:-493.656,-43.0614,0	0/1:69:34,35:34:1220:35:1256:-92.4614,0,-89.3357	1/1:83:0,83:0:0:83:2976:-268.062,-24.9855,0	0/1:76:39,37:39:1400:37:1328:-96.9224,0,-103.421	0/1:43:21,22:21:756:22:792:-58.6598,0,-55.4229	0/1:109:49,60:49:1745:60:2144:-160.395,0,-124.52	0/1:84:51,33:51:1828:33:1173:-80.5882,0,-139.514	1/1:134:2,131:2:72:131:4669:-413.53,-33.5601,0	1/1:129:1,128:1:36:128:4593:-409.764,-35.2346,0
chr11	31907091	.	T	C	134439	PASS	AB=0.533431;ABP=36.1135;AC=139;AF=0.747312;AN=186;AO=5375;CIGAR=1X;DP=6988;DPB=6988;DPRA=21.9184;EPP=4949.12;EPPR=2014.56;GTI=0;LEN=1;MEANALT=1.01099;MQM=59.8631;MQMR=59.9038;NS=93;NUMALT=1;ODDS=0.518554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191839;QR=57726;RO=1612;RPL=937;RPP=4954.78;RPPR=2014.56;RPR=4438;RUN=1;SAF=1;SAP=11666;SAR=5374;SRF=0;SRP=3503.42;SRR=1612;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39:0:0:39:1385:-124.947,-11.7402,0	0/1:119:53,66:53:1893:66:2342:-175.213,0,-134.824	0/1:71:27,44:27:957:44:1584:-121.425,0,-65.0698	0/1:121:56,65:56:2016:65:2340:-174.43,0,-145.286	0/1:34:17,17:17:612:17:612:-45.1784,0,-45.1784	0/1:46:28,18:28:1004:18:633:-43.4477,0,-76.8214	1/1:127:0,127:0:0:127:4507:-405.779,-38.2308,0	0/1:135:44,91:44:1580:91:3242:-251.36,0,-101.808	0/1:68:29,39:29:1025:39:1396:-105.451,0,-72.0147	1/1:80:0,80:0:0:80:2857:-257.359,-24.0824,0	0/1:55:28,27:28:1008:27:968:-70.8807,0,-74.4797	1/1:51:0,51:0:0:51:1809:-163.09,-15.3525,0	0/1:59:31,28:31:1116:28:989:-71.5612,0,-82.9894	1/1:81:0,81:0:0:81:2893:-260.371,-24.3834,0	1/1:56:0,56:0:0:56:2001:-180.354,-16.8577,0	1/1:36:0,36:0:0:36:1296:-116.938,-10.8371,0	0/1:66:29,37:29:1044:37:1313:-98.6008,0,-74.4022	0/1:47:24,23:24:864:23:828:-60.6957,0,-63.9342	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:95:0,95:0:0:95:3386:-304.953,-28.5979,0	0/1:105:61,44:61:2188:44:1565:-109.531,0,-165.578	1/1:105:0,105:0:0:105:3734:-336.253,-31.6082,0	0/1:128:45,83:45:1593:83:2957:-227.828,0,-105.126	1/1:92:4,88:4:140:88:3130:-268.977,-14.7502,0	1/1:51:0,51:0:0:51:1789:-161.251,-15.3525,0	0/1:283:127,156:127:4537:156:5584:-417.456,0,-323.304	0/1:106:52,54:52:1853:54:1936:-142.607,0,-135.138	0/1:16:4,12:4:140:12:428:-34.0423,0,-8.1281	0/1:139:67,72:67:2412:72:2561:-188.887,0,-175.493	1/1:146:3,143:3:108:143:5132:-451.9,-33.8752,0	1/1:104:1,103:1:36:103:3640:-324.188,-27.7088,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	.:.:.:.:.:.:.:.	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:151:0,151:0:0:151:5397:-485.783,-45.4555,0	1/1:253:0,253:0:0:253:9013:-810.445,-76.1606,0	0/1:39:15,24:15:540:24:849:-64.9877,0,-37.1964	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:92:50,42:50:1788:42:1489:-106.608,0,-133.506	1/1:22:0,22:0:0:22:792:-71.6033,-6.62266,0	1/1:84:0,84:0:0:84:2990:-269.326,-25.2865,0	1/1:54:0,54:0:0:54:1936:-174.506,-16.2556,0	1/1:48:1,47:1:36:47:1650:-145.185,-10.8512,0	1/1:115:0,115:0:0:115:4100:-369.184,-34.6185,0	0/1:69:45,24:45:1605:24:851:-56.1384,0,-123.966	1/1:117:0,117:0:0:117:4193:-377.549,-35.2205,0	0/1:92:44,48:44:1576:48:1728:-128.111,0,-114.361	1/1:81:0,81:0:0:81:2893:-260.602,-24.3834,0	1/1:114:0,114:0:0:114:4032:-363.064,-34.3174,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:84:32,52:32:1133:52:1872:-143.469,0,-76.9901	1/1:20:0,20:0:0:20:705:-63.7728,-6.0206,0	1/1:14:0,14:0:0:14:485:-43.977,-4.21442,0	1/1:98:0,98:0:0:98:3479:-313.317,-29.5009,0	1/1:53:0,53:0:0:53:1904:-171.603,-15.9546,0	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	0/1:98:41,57:41:1476:57:2033:-153.738,0,-103.634	0/1:134:74,60:74:2664:60:2126:-151.266,0,-199.667	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:94:0,94:0:0:94:3360:-302.614,-28.2968,0	0/1:211:82,128:82:2936:128:4568:-347.513,0,-200.887	0/1:59:23,36:23:824:36:1296:-99.1832,0,-56.7225	0/1:57:26,31:26:921:31:1086:-80.8863,0,-66.0465	1/1:137:0,137:0:0:137:4881:-439.189,-41.2411,0	1/1:83:1,82:1:36:82:2941:-260.83,-21.3872,0	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	1/1:57:0,57:0:0:57:2020:-182.064,-17.1587,0	1/1:107:0,107:0:0:107:3821:-344.086,-32.2102,0	0/1:21:8,13:8:288:13:464:-35.7759,0,-19.9458	1/1:120:0,120:0:0:120:4274:-384.809,-36.1236,0	0/1:29:15,14:15:536:14:504:-36.9682,0,-39.8449	0/1:183:78,105:78:2800:105:3772:-284.58,0,-197.105	1/1:82:1,81:1:36:81:2904:-257.996,-21.0862,0	0/1:102:43,59:43:1548:59:2116:-160.004,0,-108.906	1/1:35:0,35:0:0:35:1260:-113.704,-10.5361,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:23:7,16:7:248:16:576:-45.2513,0,-15.7405	0/1:70:32,38:32:1148:38:1364:-101.748,0,-82.5577	1/1:134:0,134:0:0:134:4816:-433.418,-40.338,0	0/1:103:64,39:64:2304:39:1404:-95.6532,0,-176.614	0/1:48:27,21:27:964:21:748:-53.1953,0,-72.6274	1/1:59:0,59:0:0:59:2109:-190.076,-17.7608,0	1/1:100:3,97:3:108:97:3469:-302.345,-20.0278,0	0/1:29:11,18:11:396:18:648:-49.922,0,-27.2529	1/1:71:0,71:0:0:71:2544:-229.211,-21.3731,0	0/1:68:38,30:38:1364:30:1076:-76.6828,0,-102.587	0/1:31:18,13:18:644:13:468:-33.1195,0,-48.9587	0/1:91:45,46:45:1601:46:1652:-121.575,0,-116.984	0/1:49:32,17:32:1144:17:612:-40.6614,0,-88.519	1/1:67:0,67:0:0:67:2403:-216.508,-20.169,0	1/1:70:1,69:1:36:69:2472:-219.134,-17.4738,0
chr11	31907100	.	C	T	26619.5	PASS	AB=0.466589;ABP=36.0941;AC=47;AF=0.252688;AN=186;AO=1614;CIGAR=1X;DP=6995;DPB=6995;DPRA=1.13816;EPP=3370.17;EPPR=11263.6;GTI=0;LEN=1;MEANALT=1.0566;MQM=59.9021;MQMR=59.8824;NS=93;NUMALT=1;ODDS=0.350076;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57513;QR=191767;RO=5376;RPL=1598;RPP=3370.17;RPPR=11255.1;RPR=16;RUN=1;SAF=0;SAP=3507.77;SAR=1614;SRF=1;SRP=11668.2;SRR=5375;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:116:64,52:64:2281:52:1827:-129.785,0,-170.63	0/1:72:44,28:44:1569:28:1008:-69.3613,0,-119.78	0/1:123:66,57:66:2342:57:2027:-145.674,0,-174.006	0/1:33:16,17:16:572:17:606:-44.9371,0,-41.8794	0/1:47:20,27:20:701:27:957:-72.2949,0,-49.2633	0/0:126:126,0:126:4513:0:0:0,-37.9298,-406.318	0/1:133:89,44:89:3181:44:1580:-102.41,0,-246.475	0/1:68:37,31:37:1328:31:1093:-78.135,0,-99.3346	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.991	0/1:55:27,28:27:968:28:999:-73.6685,0,-70.8807	0/0:50:50,0:50:1791:0:0:0,-15.0515,-161.472	0/1:59:28,31:28:1008:31:1086:-80.2827,0,-73.2756	0/0:78:78,0:78:2785:0:0:0,-23.4803,-250.882	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.822	0/0:37:37,0:37:1283:0:0:0,-11.1381,-115.764	0/1:65:37,28:37:1328:28:1008:-71.4648,0,-100.255	0/1:48:24,24:24:849:24:864:-63.6331,0,-62.2784	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/0:96:96,0:96:3437:0:0:0,-28.8989,-309.541	0/1:105:44,61:44:1580:61:2196:-166.297,0,-110.883	0/0:105:105,0:105:3723:0:0:0,-31.6081,-335.269	0/1:128:82,46:82:2891:46:1631:-108.545,0,-221.889	0/0:92:88,4:88:3164:4:144:0,-14.3811,-271.668	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.771	0/1:279:154,125:154:5491:125:4455:-317.129,0,-410.281	0/1:106:54,52:54:1940:52:1847:-134.598,0,-142.967	0/1:16:12,4:12:424:4:144:-8.49714,0,-33.6799	0/1:138:71,67:71:2514:67:2397:-174.443,0,-184.959	0/0:147:144,3:144:5146:3:104:0,-34.5486,-453.557	0/0:103:102,1:102:3664:1:36:0,-27.4078,-326.257	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:4:3,0:3:108:0:0:0,-0.90309,-9.82772	0/0:148:148,0:148:5320:0:0:0,-44.5524,-478.917	0/0:256:256,0:256:9082:0:0:0,-77.0637,-816.418	0/1:39:23,16:23:828:16:561:-39.077,0,-63.1039	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:93:43,50:43:1548:50:1747:-129.507,0,-111.617	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6033	0/0:83:83,0:83:2973:0:0:0,-24.9855,-267.789	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.104	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.788	0/0:115:115,0:115:4100:0:0:0,-34.6184,-369.184	0/1:68:24,44:24:845:44:1572:-121.301,0,-55.8971	0/0:113:113,0:113:4034:0:0:0,-34.0164,-363.245	0/1:92:47,45:47:1692:45:1601:-116.608,0,-124.872	0/0:83:83,0:83:2973:0:0:0,-24.9855,-267.797	0/0:112:112,0:112:4017:0:0:0,-33.7154,-361.716	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:84:52,32:52:1868:32:1144:-77.9807,0,-143.109	0/0:20:20,0:20:705:0:0:0,-6.0206,-63.7728	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:100:100,0:100:3524:0:0:0,-30.103,-317.367	0/0:52:51,1:51:1798:1:36:0,-12.0553,-158.499	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:98:57,41:57:2033:41:1476:-103.634,0,-153.738	0/1:136:61,74:61:2150:74:2650:-197.747,0,-152.765	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:97:97,0:97:3462:0:0:0,-29.1999,-311.781	0/1:214:130,83:130:4585:83:2948:-201.071,0,-348.289	0/1:59:36,23:36:1292:23:809:-55.3675,0,-98.8226	0/1:56:31,25:31:1108:25:877:-62.387,0,-83.1733	0/0:135:134,1:134:4748:1:36:0,-37.0408,-422.856	0/0:84:83,1:83:2988:1:36:0,-21.6882,-264.524	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.114	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6502	0/0:122:122,0:122:4331:0:0:0,-36.7257,-389.94	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/1:184:105,79:105:3734:79:2814:-198.09,0,-280.86	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.669	0/1:105:61,43:61:2153:43:1541:-107.462,0,-162.517	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	1/1:6:0,6:0:0:6:201:-18.417,-1.80618,0	0/1:23:16,7:16:576:7:248:-15.7405,0,-45.2513	0/1:71:39,32:39:1377:32:1148:-82.2567,0,-102.613	0/0:135:135,0:135:4813:0:0:0,-40.639,-433.158	0/1:104:39,65:39:1359:65:2321:-177.841,0,-91.2951	0/1:47:21,26:21:748:26:936:-70.4111,0,-53.4969	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:103:100,3:100:3565:3:108:0,-20.9309,-310.982	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.818	0/1:68:30,38:30:1080:38:1368:-102.947,0,-77.0432	0/1:31:13,18:13:468:18:648:-49.32,0,-33.1195	0/1:91:46,45:46:1641:45:1586:-115.633,0,-120.583	0/1:49:17,32:17:612:32:1148:-88.8794,0,-40.6614	0/0:65:64,0:64:2289:0:0:0,-19.2659,-205.912	0/0:71:70,1:70:2486:1:36:0,-17.7749,-220.39
chr11	31911144	.	GAG	AAA,AAG	618867	PASS	AB=0.515087,0.482955;ABP=25.2219,31.362;AC=142,46;AF=0.755319,0.244681;AN=188;AO=17399,5496;CIGAR=1X1M1X,1X2M;DP=22966;DPB=22967.7;DPRA=0,1.29236;EPP=37784.5,11937.4;EPPR=5.18177;GTI=0;LEN=3,1;MEANALT=2.30851,2.61905;MQM=59.9607,59.9803;MQMR=60;NS=94;NUMALT=2;ODDS=9.96213;PAIRED=0,0;PAIREDR=0;PAO=4.5,0.5;PQA=90,18;PQR=0;PRO=0;QA=610016,196522;QR=36;RO=1;RPL=9689,3071;RPP=491.8,167.892;RPPR=5.18177;RPR=7710,2425;RUN=1,1;SAF=9689,3071;SAP=491.8,167.892;SAR=7710,2425;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:148:0,148,0:0:0:148,0:5109,0:-459.962,-44.5524,0,-459.962,-44.5524,-459.962	1/2:345:0,195,149:0:0:195,149:6841,5338:-991.831,-435.338,-376.637,-556.488,0,-511.634	1/2:401:0,221,179:0:0:221,179:7692,6393:-1146.67,-521.216,-454.689,-625.449,0,-571.564	1/2:637:0,367,268:0:0:367,268:12926,9579:-1833.37,-781.026,-670.548,-1052.34,0,-971.661	1/2:148:0,87,61:0:0:87,61:3045,2192:-426.917,-179.183,-152.993,-248.09,0,-229.727	1/2:131:0,68,63:0:0:68,63:2367,2254:-376.621,-184.158,-163.688,-192.816,0,-173.851	1/1:333:0,333,0:0:0:333,0:11628,0:-1046.41,-100.243,0,-1046.41,-100.243,-1046.41	1/2:423:0,243,179:0:0:243,179:8525,6428:-1218.12,-524.361,-451.21,-693.759,0,-639.875	1/2:340:0,164,175:0:0:164,175:5698,6222:-970.334,-507.109,-457.74,-463.296,0,-410.616	1/1:281:0,279,0:0:0:279,0:9817,0:-883.208,-83.9874,0,-883.208,-83.9874,-883.208	1/2:114:0,59,53:0:0:59,53:2028,1904:-320,-155.323,-137.563,-164.669,0,-148.714	1/1:217:0,215,1:0:0:215,1:7427,36:-668.069,-64.7215,0,-665.132,-61.784,-664.831	1/2:171:0,90,80:0:0:90,80:3128,2835:-485.252,-230.946,-203.853,-254.297,0,-230.215	1/1:168:0,167,0:0:0:167,0:5834,0:-524.821,-50.272,0,-524.821,-50.272,-524.821	1/1:172:1,170,1:1:36:170,1:6004,36:-536.875,-48.2377,0,-534.238,-48.2377,-536.875	1/1:158:0,157,0:0:0:157,0:5558,0:-500.072,-47.2617,0,-500.072,-47.2617,-500.072	1/2:131:0,73,58:0:0:73,58:2562,2076:-378.15,-169.651,-147.676,-208.854,0,-191.394	1/2:125:0,65,60:0:0:65,60:2308,2141:-362.953,-174.894,-155.327,-188.414,0,-170.353	1/1:98:0,96,1:0:0:96,1:3371,36:-303.248,-28.8989,0,-300.311,-25.9615,-300.009	1/1:549:0,546,1:0:0:546,1:19217,36:-1728.79,-164.362,0,-1725.85,-161.412,-1725.55	1/2:488:0,231,256:0:0:231,256:7989,9146:-1394.98,-745.818,-676.28,-649.287,0,-572.223	1/1:252:0,252,0:0:0:252,0:8865,0:-797.832,-75.8596,0,-797.832,-75.8596,-797.832	1/2:259:0,128,131:0:0:128,131:4488,4686:-747.67,-382.463,-343.931,-365.561,0,-326.126	1/1:323:0,293,29:0:0:293,29:10292,1040:-925.84,-88.2018,0,-841.013,-3.37708,-832.283	1/1:327:0,326,0:0:0:326,0:11407,0:-1026.26,-98.1358,0,-1026.26,-98.1358,-1026.26	1/2:721:0,358,363:0:0:358,363:12595,13017:-2087.34,-1062.06,-954.292,-1025.63,0,-916.36	1/2:773:0,388,385:0:0:388,385:13638,13768:-2233.05,-1123,-1006.2,-1110.4,0,-994.507	1/2:79:0,54,25:0:0:54,25:1926,879:-228.91,-71.901,-55.6454,-157.362,0,-149.836	1/2:718:0,374,343:0:0:374,343:13106,12262:-2066.4,-999.958,-887.373,-1066.58,0,-963.331	1/1:306:0,294,12:0:0:294,12:10315,432:-927.932,-88.5028,0,-892.682,-52.894,-889.07	1/1:330:0,324,5:0:0:324,5:11253,180:-1011.72,-97.5337,0,-997.031,-82.7801,-995.525	1/2:8:0,5,3:0:0:5,3:169,108:-22.8575,-9.17208,-7.66693,-14.037,0,-13.134	1/2:32:0,20,12:0:0:20,12:695,432:-92.0853,-35.6088,-29.5882,-56.8316,0,-53.2193	1/1:13:0,13,0:0:0:13,0:432,0:-39.1989,-3.91339,0,-39.1989,-3.91339,-39.1989	1/2:9:0,2,7:0:0:2,7:63,252:-25.978,-20.9217,-20.3197,-5.38109,0,-3.27388	1/1:20:0,20,0:0:0:20,0:688,0:-62.2373,-6.0206,0,-62.2373,-6.0206,-62.2373	1/1:464:0,458,2:0:0:458,2:16149,72:-1452.79,-137.872,0,-1446.92,-131.976,-1446.32	1/1:228:0,226,1:0:0:226,1:7941,36:-714.422,-68.0328,0,-711.484,-65.0401,-711.183	1/2:123:0,76,47:0:0:76,47:2667,1677:-354.112,-137.068,-114.189,-217.399,0,-203.251	1/1:9:0,9,0:0:0:9,0:301,0:-27.4131,-2.70927,0,-27.4131,-2.70927,-27.4131	1/2:306:0,157,149:0:0:157,149:5509,5336:-883.782,-435.458,-388.196,-448.619,0,-403.766	1/1:76:0,75,0:0:0:75,0:2661,0:-239.375,-22.5773,0,-239.375,-22.5773,-239.375	1/1:431:0,430,0:0:0:430,0:15175,0:-1365.19,-129.443,0,-1365.19,-129.443,-1365.19	1/1:178:0,177,0:0:0:177,0:6211,0:-558.736,-53.2823,0,-558.736,-53.2823,-558.736	1/1:165:0,163,0:0:0:163,0:5776,0:-519.617,-49.0679,0,-519.617,-49.0679,-519.617	1/1:280:0,279,0:0:0:279,0:9783,0:-880.223,-83.9874,0,-880.223,-83.9874,-880.223	1/2:362:0,197,164:0:0:197,164:6922,5887:-1043.61,-480.209,-420.906,-563.394,0,-514.025	1/1:525:0,522,1:0:0:522,1:18342,36:-1650.11,-157.138,0,-1647.17,-154.167,-1646.87	1/2:181:0,95,86:0:0:95,86:3316,3069:-520.261,-250.55,-221.952,-270.064,0,-244.175	1/1:369:0,368,0:0:0:368,0:12951,0:-1165.17,-110.779,0,-1165.17,-110.779,-1165.17	1/1:352:0,352,0:0:0:352,0:12389,0:-1114.69,-105.963,0,-1114.69,-105.963,-1114.69	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6761,-8.42884,0,-90.6761,-8.42884,-90.6761	1/2:297:0,144,153:0:0:144,153:5053,5472:-857.77,-446.55,-403.202,-411.574,0,-365.516	1/1:96:0,96,0:0:0:96,0:3363,0:-302.889,-28.8989,0,-302.889,-28.8989,-302.889	1/1:19:0,19,0:0:0:19,0:682,0:-61.7017,-5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chr12	782	.	T	C	50303.5	PASS	AB=0.487373;ABP=14.4171;AC=123;AF=0.654255;AN=188;AO=6133;CIGAR=1X;DP=10373;DPB=10373;DPRA=18.5789;EPP=13242.6;EPPR=9041.34;GTI=6;LEN=1;MEANALT=1.05376;MQM=24.1319;MQMR=25.6705;NS=94;NUMALT=1;ODDS=0.391433;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218046;QR=151421;RO=4234;RPL=6124;RPP=13242.6;RPPR=9041.34;RPR=9;RUN=1;SAF=6133;SAP=13320.7;SAR=0;SRF=4234;SRP=9197.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:32:14,18:14:504:18:648:-27.4259,0,-19.2839	1/1:178:1,176:1:27:176:6281:-352.695,-51.2833,0	1/1:127:0,127:0:0:127:4533:-254.86,-38.2308,0	0/1:332:123,209:123:4392:209:7453:-357.635,0,-184.765	0/1:99:65,34:65:2331:34:1220:-45.1273,0,-118.194	0/1:31:12,19:12:428:19:684:-29.6025,0,-16.5058	0/1:151:66,85:66:2367:85:3014:-142.145,0,-109.511	1/1:144:0,144:0:0:144:5117:-288.737,-43.3483,0	0/1:50:25,25:25:896:25:896:-35.6537,0,-38.3846	0/1:233:113,120:113:4033:120:4299:-192.573,0,-194.608	1/1:30:0,30:0:0:30:1067:-64.1219,-9.0309,0	0/1:35:16,19:16:572:19:669:-28.3074,0,-23.5881	1/1:11:0,11:0:0:11:385:-21.4395,-3.31133,0	1/1:25:0,25:0:0:25:900:-55.4977,-7.52575,0	1/1:22:0,22:0:0:22:775:-47.7719,-6.62266,0	0/1:40:21,19:21:756:19:680:-29.0429,0,-36.9858	1/1:75:0,75:0:0:75:2641:-150.236,-22.5773,0	1/1:17:0,17:0:0:17:597:-33.9852,-5.11751,0	0/1:30:11,19:11:374:19:671:-29.1383,0,-14.399	0/1:327:211,116:211:7567:116:4097:-156.297,0,-400.74	0/1:120:80,40:80:2849:40:1421:-52.2165,0,-152.418	1/1:49:0,49:0:0:49:1741:-106.92,-14.7505,0	0/1:56:28,28:28:1004:28:975:-44.3776,0,-49.2288	0/1:131:86,45:86:3068:45:1611:-59.2821,0,-162.458	0/1:88:35,53:35:1260:53:1883:-88.4174,0,-56.6287	0/1:401:242,159:242:8655:159:5632:-228.186,0,-427.808	0/1:198:80,118:80:2846:118:4216:-200.959,0,-127.539	0/1:31:20,11:20:716:11:396:-13.1212,0,-38.382	1/1:284:2,282:2:72:282:10014:-614.217,-80.8069,0	0/1:342:189,153:189:6780:153:5468:-229.705,0,-337.043	0/1:183:107,76:107:3818:76:2704:-106.698,0,-199.38	0/1:17:4,13:4:140:13:468:-23.992,0,-4.61967	0/1:11:5,6:5:180:6:216:-10.2567,0,-8.87223	0/1:11:7,4:7:248:4:144:-5.12047,0,-11.7587	1/1:3:0,3:0:0:3:108:-6.38082,-0.90309,0	0/1:13:4,9:4:144:9:324:-14.5095,0,-4.86867	1/1:58:0,58:0:0:58:2062:-127.75,-17.4597,0	0/1:419:144,274:144:5147:274:9709:-473.168,0,-208.797	0/1:52:23,29:23:824:29:1021:-43.473,0,-33.3348	0/1:3:2,1:2:72:1:36:-1.56382,0,-4.12925	0/1:219:125,94:125:4470:94:3367:-140.453,0,-228.827	0/1:28:15,12:15:536:12:432:-17.9118,0,-26.6636	0/1:198:139,59:139:4967:59:2072:-64.6235,0,-264.19	0/1:57:25,32:25:896:32:1139:-52.1174,0,-42.3929	1/1:37:0,37:0:0:37:1280:-79.2135,-11.1381,0	0/1:100:38,62:38:1364:62:2212:-107.422,0,-56.106	1/1:103:5,98:5:180:98:3483:-184.037,-19.5768,0	0/1:360:114,246:114:4070:246:8734:-424.938,0,-157.163	0/1:112:66,46:66:2360:46:1644:-67.9679,0,-119.784	0/1:198:118,80:118:4197:80:2842:-113.54,0,-216.869	0/1:242:116,126:116:4152:126:4503:-202.987,0,-187.786	0/1:30:5,25:5:180:25:892:-45.6203,0,-3.15266	0/1:483:281,202:281:10062:202:7226:-263.567,0,-451.297	0/1:32:17,15:17:595:15:532:-23.8341,0,-28.4315	0/1:25:19,6:19:671:6:205:-3.81208,0,-33.7204	0/1:144:77,67:77:2755:67:2395:-103.102,0,-135.214	0/1:47:20,27:20:711:27:959:-44.5042,0,-33.0724	1/1:2:0,2:0:0:2:72:-4.68712,-0.60206,0	0/1:41:23,18:23:828:18:648:-26.4591,0,-40.8789	0/1:61:16,45:16:576:45:1595:-79.8993,0,-16.9095	1/1:29:0,29:0:0:29:1027:-64.1486,-8.72987,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-14.4007	0/1:472:159,312:159:5702:312:11042:-537.531,0,-218.698	1/1:149:0,147:0:0:147:5266:-320.913,-44.2514,0	0/1:91:67,24:67:2400:24:855:-24.4894,0,-132.151	1/1:101:0,101:0:0:101:3561:-218.43,-30.404,0	0/1:201:115,86:115:4100:86:3075:-126.779,0,-206.34	1/1:14:0,14:0:0:14:492:-31.2054,-4.21442,0	0/1:12:4,8:4:140:8:288:-14.396,0,-5.47612	0/1:70:38,32:38:1359:32:1152:-44.5256,0,-57.8575	1/1:25:1,24:1:27:24:856:-51.1027,-5.17917,0	0/1:33:23,10:23:824:10:360:-11.9913,0,-45.0956	1/1:26:0,26:0:0:26:923:-51.7428,-7.82678,0	0/1:52:33,19:33:1184:19:680:-22.2754,0,-54.9565	1/1:25:0,25:0:0:25:896:-54.0438,-7.52575,0	1/1:220:0,220:0:0:220:7816:-482.788,-66.2266,0	0/1:376:218,158:218:7812:158:5591:-203.146,0,-340.503	0/1:142:83,59:83:2979:59:2108:-77.9523,0,-129.913	0/1:17:8,9:8:288:9:324:-13.5692,0,-12.2945	0/1:181:62,119:62:2220:119:4253:-205.808,0,-92.7261	0/1:280:201,79:201:7202:79:2832:-77.4519,0,-340.534	1/1:106:0,106:0:0:106:3760:-231.262,-31.9092,0	1/1:28:0,28:0:0:28:1004:-61.1352,-8.42884,0	1/1:20:0,20:0:0:20:711:-44.4892,-6.0206,0	1/1:22:0,22:0:0:22:759:-48.0598,-6.62266,0	0/1:125:37,88:37:1320:88:3087:-152.868,0,-49.5795	0/1:42:7,35:7:243:35:1244:-56.7738,0,-2.28018	0/1:73:48,25:48:1712:25:887:-29.388,0,-80.1502	0/1:68:36,32:36:1288:32:1136:-43.5275,0,-54.8555	0/1:17:10,7:10:360:7:248:-10.4712,0,-18.7344	0/1:74:46,28:46:1656:28:989:-39.1233,0,-86.8993	0/1:97:77,20:77:2749:20:716:-13.2414,0,-151.73	1/1:139:0,139:0:0:139:4941:-302.804,-41.8432,0	1/1:62:0,62:0:0:62:2159:-132.845,-18.6639,0
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chr12	269921	.	T	A	15635.7	PASS	AB=0.511004;ABP=4.96964;AC=46;AF=0.247312;AN=186;AO=957;CIGAR=1X;DP=3823;DPB=3823;DPRA=1.03316;EPP=2081.11;EPPR=6224.28;GTI=0;LEN=1;MEANALT=1.02222;MQM=59.9331;MQMR=59.9923;NS=93;NUMALT=1;ODDS=0.564057;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33935;QR=102571;RO=2865;RPL=0;RPP=2081.11;RPPR=6224.28;RPR=957;RUN=1;SAF=957;SAP=2081.11;SAR=0;SRF=2865;SRP=6224.28;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:130:78,52:78:2800:52:1849:-127.554,0,-213.106	0/0:123:123,0:123:4404:0:0:0,-37.0267,-396.533	0/1:33:16,17:16:576:17:604:-44.7566,0,-42.241	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/1:52:25,27:25:888:27:953:-70.4298,0,-64.5855	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:36:18,18:18:648:18:633:-46.458,0,-47.8148	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:26:26,0:26:914:0:0:0,-7.82678,-82.5747	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:105:55,50:55:1968:50:1784:-129.235,0,-145.787	0/0:80:80,0:80:2855:0:0:0,-24.0824,-257.165	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/1:39:23,16:23:809:16:568:-39.7111,0,-61.3881	0/1:72:24,48:24:864:48:1708:-132.332,0,-56.4084	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:120:53,67:53:1900:67:2381:-178.423,0,-135.154	0/1:56:25,31:25:900:31:1112:-83.5337,0,-64.4633	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:13:4,9:4:144:9:312:-24.5005,0,-9.40023	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:14:13,1:13:453:1:21:0,-2.11476,-39	0/1:84:37,47:37:1328:47:1669:-125.208,0,-94.5357	0/1:51:28,23:28:1008:23:824:-59.1308,0,-75.6838	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	.:.:.:.:.:.:.:.	0/1:68:39,29:39:1389:29:1002:-70.0161,0,-104.837	0/1:17:5,12:5:180:12:428:-33.7413,0,-11.4346	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/1:48:22,26:22:788:26:928:-69.3888,0,-56.7954	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.399	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:38:28,10:28:1000:10:345:-19.9417,0,-78.8762	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.763	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:28:15,13:15:536:13:463:-33.578,0,-40.146	0/1:63:35,28:35:1248:28:980:-69.548,0,-93.66	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.407	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:40:25,15:25:900:15:540:-36.8953,0,-69.2798	0/1:65:34,31:34:1224:31:1116:-81.1847,0,-90.9001	0/1:102:32,69:32:1148:69:2438:-188.909,0,-72.866	0/1:14:9,5:9:324:5:176:-11.9706,0,-25.2914	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:18:12,6:12:423:6:208:-13.6405,0,-32.9865	0/1:18:6,12:6:212:12:424:-33.0779,0,-14.0063	0/1:63:11,52:11:387:52:1815:-144.106,0,-16.201	0/1:48:23,25:23:824:25:896:-66.5109,0,-60.0339	0/1:61:29,32:29:1040:32:1121:-82.8329,0,-75.5515	0/0:78:78,0:78:2769:0:0:0,-23.4803,-249.451	0/1:50:25,25:25:900:25:896:-65.9007,0,-66.2695	0/1:37:17,20:17:608:20:708:-52.9075,0,-43.9139	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:34:34,0:34:1209:0:0:0,-10.235,-109.114	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:32:19,13:19:684:13:464:-32.4645,0,-52.2574	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.9293	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:47:32,15:32:1152:15:540:-34.7881,0,-89.8417	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:39:20,19:20:716:19:668:-48.7055,0,-53.0275	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:54:31,23:31:1116:23:824:-58.2277,0,-84.4961	0/1:22:5,17:5:180:17:597:-47.4335,0,-9.9294	0/0:101:101,0:101:3628:0:0:0,-30.404,-326.71	0/0:40:40,0:40:1422:0:0:0,-12.0412,-128.276
chr12	280036	.	C	A	142636	PASS	AB=0.642474;ABP=2172.37;AC=67;AF=0.356383;AN=188;AO=7929;CIGAR=1X;DP=13623;DPB=13623;DPRA=4.27322;EPP=17220.6;EPPR=12367.4;GTI=21;LEN=1;MEANALT=1;MQM=59.9903;MQMR=54.8988;NS=94;NUMALT=1;ODDS=1.2607;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=283224;QR=190881;RO=5694;RPL=0;RPP=17220.6;RPPR=12358.7;RPR=7929;RUN=1;SAF=0;SAP=17220.6;SAR=7929;SRF=5693;SRP=12358.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:682:0:0:0,-6.32163,-61.6182	0/0:79:79,0:79:2588:0:0:0,-23.7814,-233.02	0/0:62:62,0:62:2050:0:0:0,-18.6639,-184.38	0/1:461:99,362:99:3237:362:12895:-1021.59,0,-152.082	0/1:101:35,66:35:1157:66:2356:-181.867,0,-73.9722	0/0:27:27,0:27:906:0:0:0,-8.12781,-81.8303	0/1:309:99,210:99:3249:210:7425:-575.283,0,-198.644	0/0:86:86,0:86:2918:0:0:0,-25.8886,-262.772	0/0:81:81,0:81:2634:0:0:0,-24.3834,-237.05	0/1:211:79,132:79:2658:132:4719:-361.352,0,-175.396	0/1:68:34,34:34:1182:34:1212:-88.9163,0,-84.5699	0/0:36:36,0:36:1205:0:0:0,-10.8371,-108.645	0/0:57:57,0:57:1954:0:0:0,-17.1587,-176.09	0/1:126:63,63:63:2161:63:2244:-164.294,0,-155.97	0/1:86:43,43:43:1513:43:1548:-113.724,0,-110.166	0/1:43:19,24:19:639:24:864:-65.1383,0,-44.8413	0/0:43:43,0:43:1510:0:0:0,-12.9443,-136.157	0/0:33:33,0:33:1132:0:0:0,-9.93399,-102.158	0/0:17:17,0:17:582:0:0:0,-5.11751,-52.5509	0/1:301:167,134:167:5641:134:4762:-338.127,0,-416.4	0/1:413:115,298:115:3826:298:10664:-835.345,0,-219.832	0/1:331:147,184:147:4870:184:6600:-494.438,0,-337.664	0/1:222:75,147:75:2511:147:5242:-405.09,0,-158.987	0/1:184:114,70:114:3805:70:2508:-170.583,0,-286.31	0/1:137:54,83:54:1800:83:2980:-227.191,0,-120.882	0/1:363:159,204:159:5323:204:7306:-548.315,0,-369.205	0/1:490:140,350:140:4535:350:12520:-979.128,0,-259.864	0/1:38:23,15:23:793:15:536:-37.1357,0,-60.1835	0/1:253:81,172:81:2745:172:6155:-477.888,0,-169.998	0/1:226:79,147:79:2611:147:5272:-406.582,0,-167.024	0/1:264:80,184:80:2673:184:6549:-510.021,0,-160.081	0/1:18:9,9:9:309:9:324:-24.0873,0,-22.7101	1/1:25:2,23:2:72:23:828:-68.0109,-0.692549,0	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.32969	0/0:3:3,0:3:93:0:0:0,-0.90309,-8.67576	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23552	0/1:154:95,59:95:3342:59:2112:-143.99,0,-253.393	0/1:228:78,150:78:2632:150:5376:-415.336,0,-168.228	0/0:44:44,0:44:1523:0:0:0,-13.2453,-137.16	0/1:7:3,4:3:95:4:144:-11.2064,0,-6.75424	0/1:197:69,128:69:2250:128:4600:-354.859,0,-142.654	0/1:33:22,11:22:771:11:396:-26.0488,0,-59.72	0/1:585:183,402:183:6047:402:14388:-1118.57,0,-367.333	0/1:117:55,62:55:1938:62:2203:-163.314,0,-139.07	0/1:90:46,44:46:1575:44:1580:-115.399,0,-114.766	0/1:296:66,230:66:2220:230:8165:-645.765,0,-110.632	0/0:120:119,1:119:3795:1:36:0,-32.5253,-337.863	0/1:383:99,284:99:3322:284:10149:-798.047,0,-183.283	0/1:266:127,139:127:4237:139:4977:-368.002,0,-300.102	0/1:315:81,234:81:2688:234:8335:-655.336,0,-146.898	0/1:180:89,91:89:3070:91:3228:-236.449,0,-221.744	0/1:26:3,23:3:89:23:815:-65.844,0,-0.469253	0/0:91:91,0:91:2987:0:0:0,-27.3937,-268.915	0/1:226:26,200:26:907:200:7158:-576.243,0,-13.7342	0/0:29:29,0:29:947:0:0:0,-8.72987,-85.2837	0/1:322:55,267:55:1752:267:9552:-762.705,0,-60.8541	0/1:92:44,48:44:1506:48:1724:-127.748,0,-107.824	0/1:57:15,42:15:507:42:1496:-117.776,0,-28.7093	0/1:40:16,24:16:545:24:860:-65.6806,0,-37.2673	0/1:102:37,65:37:1213:65:2336:-179.794,0,-77.965	0/1:82:47,35:47:1612:35:1247:-87.8496,0,-120.56	0/1:32:7,25:7:235:25:892:-70.9667,0,-11.8225	0/1:424:148,276:148:4976:276:9846:-758.449,0,-317.741	0/1:427:146,281:146:4822:281:10017:-772.609,0,-304.243	0/1:174:82,92:82:2653:92:3300:-244.839,0,-185.593	0/1:121:21,100:21:680:100:3568:-284.904,0,-25.0344	0/1:231:72,159:72:2467:159:5663:-440.252,0,-152.532	0/1:135:40,95:40:1357:95:3400:-265.576,0,-81.6862	0/1:23:5,18:5:176:18:644:-51.3669,0,-9.24973	0/0:50:50,0:50:1613:0:0:0,-15.0515,-145.342	0/1:48:35,13:35:1222:13:450:-26.3791,0,-94.1433	0/1:29:10,19:10:332:19:675:-52.3471,0,-21.4398	0/0:52:52,0:52:1702:0:0:0,-15.6536,-153.322	0/0:28:28,0:28:970:0:0:0,-8.42884,-87.5934	0/1:188:81,107:81:2659:107:3848:-289.921,0,-182.626	0/1:384:124,260:124:4169:260:9264:-718.134,0,-259.363	0/0:57:57,0:57:1893:0:0:0,-17.1587,-170.571	0/0:53:53,0:53:1770:0:0:0,-15.9546,-159.44	0/0:8:8,0:8:270:0:0:0,-2.40824,-24.6219	0/1:258:63,195:63:2091:195:6984:-550.958,0,-110.622	0/0:96:96,0:96:3142:0:0:0,-28.8989,-282.777	0/1:410:160,250:160:5197:250:8925:-679.812,0,-343.874	0/1:71:57,14:57:1989:14:496:-23.6011,0,-157.734	0/1:74:36,38:36:1247:38:1364:-100.784,0,-89.6332	0/1:94:56,38:56:1910:38:1364:-94.7639,0,-143.68	0/1:126:75,51:75:2639:51:1799:-124.262,0,-199.534	0/0:24:24,0:24:840:0:0:0,-7.22472,-75.8307	0/0:28:28,0:28:962:0:0:0,-8.42884,-86.8077	0/0:63:63,0:63:2201:0:0:0,-18.9649,-198.306	0/1:48:14,34:14:492:34:1224:-96.0176,0,-30.1252	0/1:72:29,43:29:1032:43:1536:-116.859,0,-71.2244	0/1:49:30,19:30:1068:19:667:-45.6042,0,-81.6198	0/1:297:56,241:56:1890:241:8624:-686.747,0,-79.8432	0/1:146:82,64:82:2882:64:2288:-162.231,0,-213.481
chr12	318851	.	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chr12	360682	.	G	T	87518.8	PASS	AB=0.506061;ABP=5.59007;AC=45;AF=0.239362;AN=188;AO=4113;CIGAR=1X;DP=17399;DPB=17399;DPRA=1.08596;EPP=8934.28;EPPR=28827.1;GTI=0;LEN=1;MEANALT=1.10714;MQM=46.6757;MQMR=59.9664;NS=94;NUMALT=1;ODDS=0.582333;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=146031;QR=472081;RO=13274;RPL=1749;RPP=202.695;RPPR=3.56061;RPR=2364;RUN=1;SAF=1749;SAP=202.695;SAR=2364;SRF=6608;SRP=3.56061;SRR=6666;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:85:31,54:31:1112:54:1920:-134.736,0,-74.8038	0/0:195:194,1:194:6917:1:36:0,-55.1026,-618.996	0/1:229:81,148:81:2884:148:5247:-369.404,0,-190.859	0/0:324:324,0:324:11579:0:0:0,-97.5337,-1041.98	0/1:206:111,95:111:3914:95:3381:-233.075,0,-290.443	0/1:130:56,74:56:1992:74:2627:-187.775,0,-140.418	0/0:140:140,0:140:4982:0:0:0,-42.1442,-448.53	0/1:304:171,133:171:6062:133:4712:-310.395,0,-454.16	0/0:165:164,1:164:5822:1:36:0,-46.3709,-520.799	0/0:175:175,0:175:6223:0:0:0,-52.6802,-560.168	0/0:117:116,1:116:4104:1:36:0,-31.6222,-365.949	0/1:244:123,121:123:4388:121:4310:-291.418,0,-321.644	0/0:178:178,0:178:6319:0:0:0,-53.5833,-568.806	0/0:193:193,0:193:6886:0:0:0,-58.0988,-619.807	0/0:162:162,0:162:5758:0:0:0,-48.7669,-518.337	0/1:130:58,72:58:2062:72:2555:-181.408,0,-146.716	0/0:124:124,0:124:4391:0:0:0,-37.3277,-395.365	0/0:110:110,0:110:3923:0:0:0,-33.1133,-353.264	0/0:82:82,0:82:2893:0:0:0,-24.6845,-260.607	0/1:339:176,162:176:6250:162:5741:-399.427,0,-460.489	0/0:390:389,1:389:13831:1:36:0,-114.014,-1241.19	0/0:123:122,0:122:4325:0:0:0,-36.7257,-388.998	0/0:343:339,4:339:12078:4:144:0,-90.4717,-1074.02	0/0:142:142,0:142:5070:0:0:0,-42.7463,-456.445	0/1:143:75,68:75:2628:68:2409:-162.661,0,-193.718	0/1:508:274,234:274:9720:234:8341:-556.618,0,-721.834	0/0:542:541,0:541:19179:0:0:0,-162.857,-1725.28	0/0:86:86,0:86:3040:0:0:0,-25.8886,-273.83	0/1:422:194,228:194:6908:228:8086:-558.769,0,-494.755	0/1:275:135,140:135:4831:140:4920:-344.064,0,-352.161	0/0:375:374,1:374:13325:1:36:0,-109.288,-1195.45	0/1:4:2,2:2:72:2:68:-4.59157,0,-5.6326	0/1:15:11,4:11:396:4:144:-8.01867,0,-31.4673	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:31:20,11:20:720:11:383:-22.6887,0,-55.7968	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.855	0/1:397:183,214:183:6488:214:7604:-536.901,0,-464.499	0/1:222:104,118:104:3683:118:4183:-300.373,0,-264.847	0/0:124:124,0:124:4410:0:0:0,-37.3277,-397.069	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:244:114,130:114:4053:130:4601:-326.614,0,-291.507	0/1:72:39,33:39:1388:33:1171:-81.0012,0,-103.545	0/0:270:270,0:270:9619:0:0:0,-81.2781,-865.667	0/0:191:191,0:191:6808:0:0:0,-57.4967,-612.793	0/0:136:136,0:136:4832:0:0:0,-40.9401,-434.409	0/1:169:99,70:99:3487:70:2494:-163.367,0,-263.168	0/0:199:199,0:199:7077:0:0:0,-59.905,-636.995	0/0:290:289,0:289:10228:0:0:0,-86.9977,-920.083	0/0:139:139,0:139:4944:0:0:0,-41.8432,-444.621	0/0:287:287,0:287:10272:0:0:0,-86.3956,-924.395	0/1:162:82,80:82:2908:80:2839:-192.625,0,-213.188	0/1:9:6,3:6:212:3:100:-6.36906,0,-16.7155	0/0:167:167,0:167:5979:0:0:0,-50.272,-538.213	0/0:166:165,1:165:5875:1:32:0,-46.7717,-525.633	0/0:30:30,0:30:1053:0:0:0,-9.0309,-95.0786	0/0:230:229,0:229:8105:0:0:0,-68.9359,-729.254	0/0:95:95,0:95:3391:0:0:0,-28.5978,-305.405	0/1:15:10,5:10:356:5:176:-10.7104,0,-27.8658	0/1:13:7,6:7:252:6:212:-14.4945,0,-19.1156	0/1:177:69,108:69:2453:108:3855:-280.234,0,-167.741	0/1:236:113,120:113:3994:120:4296:-302.589,0,-289.247	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:302:302,0:302:10755:0:0:0,-90.9111,-967.861	0/0:290:287,3:287:10213:3:108:0,-77.4919,-909.292	0/0:158:151,7:151:5398:7:252:0,-25.6262,-464.009	0/1:162:82,80:82:2948:80:2833:-198.707,0,-216.786	0/1:288:153,135:153:5457:135:4797:-334.68,0,-404.472	0/1:201:67,134:67:2383:134:4779:-356.702,0,-154.22	0/1:82:39,43:39:1395:43:1499:-103.975,0,-101.164	0/0:82:82,0:82:2892:0:0:0,-24.6845,-260.516	0/1:167:92,75:92:3248:75:2652:-178.563,0,-242.27	0/1:43:14,29:14:504:29:1040:-77.6761,0,-32.7538	0/1:211:121,90:121:4299:90:3187:-200.501,0,-323.57	0/1:167:68,99:68:2415:99:3512:-252.357,0,-167.334	0/1:352:189,163:189:6733:163:5798:-393.947,0,-500.08	0/0:251:251,0:251:8959:0:0:0,-75.5585,-806.292	0/1:211:96,114:96:3371:114:4053:-286.806,0,-240.001	0/1:308:156,150:156:5538:150:5326:-366.735,0,-406.077	0/1:19:12,7:12:432:7:252:-16.7622,0,-33.5016	0/0:212:211,1:211:7528:1:36:0,-60.2291,-673.972	0/0:213:213,0:213:7538:0:0:0,-64.1194,-678.444	0/0:393:393,0:393:13964:0:0:0,-118.305,-1256.53	0/1:173:96,77:96:3419:77:2732:-188.097,0,-255.847	0/0:147:147,0:147:5231:0:0:0,-44.2514,-470.928	0/0:183:183,0:183:6536:0:0:0,-55.0885,-588.325	0/1:295:154,140:154:5462:140:4991:-348.034,0,-402.86	0/0:71:71,0:71:2525:0:0:0,-21.3731,-227.5	0/1:144:78,66:78:2772:66:2310:-156.999,0,-206.374	0/0:165:165,0:165:5878:0:0:0,-49.6699,-529.133	0/0:125:125,0:125:4467:0:0:0,-37.6287,-402.195	0/1:257:141,116:141:5040:116:4123:-277.483,0,-376.25	0/1:212:74,138:74:2635:138:4912:-373.294,0,-173.579	0/0:172:172,0:172:6133:0:0:0,-51.7772,-552.069	0/0:213:212,1:212:7531:1:36:0,-60.5211,-674.238
chr12	360688	.	GAT	AAT,AAC	186846	PASS	AB=0.455665,0.540528;ABP=79.2579,66.7269;AC=143,45;AF=0.760638,0.239362;AN=188;AO=6573,2434;CIGAR=1X2M,1X1M1X;DP=9034;DPB=9035.33;DPRA=48.5591,1.29631;EPP=14232.7,5288.37;EPPR=13.8677;GTI=3;LEN=1,3;MEANALT=1.75269,2.25;MQM=59.9668,36.9749;MQMR=60;NS=94;NUMALT=2;ODDS=1.94175;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=72,72;PQR=0;PRO=0;QA=234813,84860;QR=180;RO=5;RPL=5,0;RPP=14232.7,5288.37;RPPR=13.8677;RPR=6568,2434;RUN=1,1;SAF=0,0;SAP=14276.1,5288.37;SAR=6573,2434;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:70:0,23,47:0:0:23,47:828,1655:-190.837,-123.265,-116.341,-67.9204,0,-53.772	1/1:41:0,41,0:0:0:41,0:1472,0:-132.776,-12.3422,0,-132.776,-12.3422,-132.776	1/2:161:0,52,108:0:0:52,108:1848,3766:-426.465,-275.864,-260.211,-150.716,0,-118.205	1/1:168:0,168,0:0:0:168,0:6025,0:-542.352,-50.573,0,-542.352,-50.573,-542.352	1/2:102:0,52,50:0:0:52,50:1856,1748:-284.404,-133.08,-117.427,-151.666,0,-136.615	1/2:65:0,30,35:0:0:30,35:1052,1219:-175.75,-90.1306,-81.0997,-85.9553,0,-75.4192	1/1:47:0,47,0:0:0:47,0:1675,0:-151.036,-14.1484,0,-151.036,-14.1484,-151.036	1/2:179:0,94,85:0:0:94,85:3354,2992:-495.013,-221.573,-193.276,-273.779,0,-248.192	1/1:45:0,44,1:0:0:44,1:1584,36:-142.521,-13.2453,0,-139.854,-10.2473,-139.552	1/1:69:0,69,0:0:0:69,0:2463,0:-221.924,-20.7711,0,-221.924,-20.7711,-221.924	1/1:71:0,71,0:0:0:71,0:2543,0:-229.12,-21.3731,0,-229.12,-21.3731,-229.12	1/2:144:0,62,81:0:0:62,81:2228,2813:-389.618,-207.839,-189.176,-181.909,0,-157.526	1/1:90:0,90,0:0:0:90,0:3221,0:-290.111,-27.0927,0,-290.111,-27.0927,-290.111	1/1:110:0,110,0:0:0:110,0:3913,0:-352.364,-33.1133,0,-352.364,-33.1133,-352.364	1/1:96:1,95,0:1:36:95,0:3408,0:-303.336,-25.3006,0,-303.637,-28.5979,-306.574	1/2:71:0,25,46:0:0:25,46:874,1602:-192.659,-121.551,-114.025,-71.4495,0,-57.6021	1/1:39:0,39,0:0:0:39,0:1396,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/1:36:0,36,0:0:0:36,0:1292,0:-116.584,-10.8371,0,-116.584,-10.8371,-116.584	1/2:193:0,93,100:0:0:93,100:3312,3510:-541.05,-271.094,-243.098,-270.301,0,-240.198	1/1:220:0,219,1:0:0:219,1:7818,36:-703.307,-65.9256,0,-700.56,-62.839,-700.259	1/1:68:0,68,0:0:0:68,0:2427,0:-218.685,-20.47,0,-218.685,-20.47,-218.685	1/1:273:0,267,4:0:0:267,4:9514,144:-855.866,-80.375,0,-844.634,-69.086,-843.43	1/1:82:0,82,0:0:0:82,0:2935,0:-264.384,-24.6845,0,-264.384,-24.6845,-264.384	1/2:112:0,59,53:0:0:59,53:2115,1845:-311.78,-139.263,-121.502,-172.857,0,-156.903	1/2:251:0,112,138:0:0:112,138:4024,4803:-677.913,-349.621,-315.906,-328.321,0,-286.779	1/1:301:0,300,0:0:0:300,0:10725,0:-964.674,-90.309,0,-964.674,-90.309,-964.674	1/1:36:0,35,0:0:0:35,0:1260,0:-113.346,-10.5361,0,-113.346,-10.5361,-113.346	1/2:259:0,106,152:0:0:106,152:3792,5294:-700.082,-390.854,-358.944,-309.389,0,-263.632	1/2:129:0,44,84:0:0:44,84:1556,2922:-349.126,-222.385,-209.14,-126.872,0,-101.586	1/1:197:0,196,1:0:0:196,1:7016,36:-631.136,-59.0019,0,-628.198,-55.7046,-627.897	1/2:3:0,2,1:0:0:2,1:72,33:-8.16678,-2.22014,-1.61808,-6.23466,0,-5.93363	1/2:14:0,10,4:0:0:10,4:353,144:-40.0857,-11.33,-8.3197,-29.0985,0,-27.8944	1/2:4:0,3,1:0:0:3,1:108,36:-11.8327,-2.99799,-2.0949,-9.17208,0,-8.87105	1/2:29:0,19,10:0:0:19,10:684,328:-80.678,-24.8317,-19.1122,-56.1708,0,-53.1605	1/1:31:0,31,0:0:0:31,0:1112,0:-100.383,-9.33193,0,-100.383,-9.33193,-100.383	1/2:195:0,92,102:0:0:92,102:3304,3557:-532.489,-262.947,-235.252,-269.548,0,-238.843	1/2:82:1,34,46:1:36:34,46:1211,1622:-218.645,-120.23,-112.933,-95.8066,0,-84.8968	1/1:56:0,55,0:0:0:55,0:1972,0:-177.532,-16.5567,0,-177.532,-16.5567,-177.532	1/1:2:0,2,0:0:0:2,0:68,0:-6.45771,-0.60206,0,-6.45771,-0.60206,-6.45771	1/2:142:0,64,78:0:0:64,78:2296,2729:-395.114,-207.824,-188.558,-187.635,0,-164.155	1/2:45:0,26,19:0:0:26,19:936,669:-127.583,-51.1932,-43.3664,-76.7327,0,-71.0131	1/1:194:0,194,0:0:0:194,0:6903,0:-621.338,-58.3998,0,-621.338,-58.3998,-621.338	1/1:69:0,69,0:0:0:69,0:2472,0:-222.734,-20.7711,0,-222.734,-20.7711,-222.734	1/1:63:0,63,0:0:0:63,0:2240,0:-201.852,-18.9649,0,-201.852,-18.9649,-201.852	1/2:84:0,47,37:0:0:47,37:1676,1269:-230.253,-93.6072,-79.4588,-136.978,0,-125.84	1/1:77:0,77,0:0:0:77,0:2759,0:-248.551,-23.1793,0,-248.551,-23.1793,-248.551	1/1:141:0,141,0:0:0:141,0:5039,0:-453.653,-42.4452,0,-453.653,-42.4452,-453.653	1/1:49:0,49,0:0:0:49,0:1748,0:-157.604,-14.7505,0,-157.604,-14.7505,-157.604	1/1:99:0,99,0:0:0:99,0:3540,0:-318.737,-29.802,0,-318.737,-29.802,-318.737	1/2:103:0,50,53:0:0:50,53:1780,1875:-282.995,-137.903,-122.851,-145.431,0,-129.477	1/2:5:0,2,3:0:0:2,3:72,108:-14.6501,-8.76948,-8.16742,-6.23466,0,-5.33157	1/1:88:0,88,0:0:0:88,0:3148,0:-283.546,-26.4906,0,-283.546,-26.4906,-283.546	1/1:131:0,131,0:0:0:131,0:4690,0:-422.191,-39.4349,0,-422.191,-39.4349,-422.191	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:125:1,124,0:1:36:124,0:4432,0:-395.452,-34.0305,0,-395.753,-37.3277,-398.691	1/1:55:0,55,0:0:0:55,0:1956,0:-176.316,-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chr12	360696	.	T	A	36013	PASS	AB=0.534568;ABP=48.9497;AC=45;AF=0.239362;AN=188;AO=2382;CIGAR=1X;DP=9036;DPB=9036;DPRA=1.1991;EPP=5028.85;EPPR=13980.2;GTI=3;LEN=1;MEANALT=1.04082;MQM=36.9282;MQMR=59.9534;NS=94;NUMALT=1;ODDS=1.23708;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85249;QR=238315;RO=6651;RPL=2365;RPP=5028.85;RPPR=13980.2;RPR=17;RUN=1;SAF=0;SAP=5175.46;SAR=2382;SRF=0;SRP=14445.5;SRR=6651;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:69:23,46:23:820:46:1652:-115.069,0,-53.3514	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:156:51,105:51:1828:105:3768:-258.392,0,-117.84	0/0:169:169,0:169:6068:0:0:0,-50.8741,-546.22	0/1:102:52,50:52:1857:50:1779:-119.974,0,-136.703	0/1:63:29,34:29:1036:34:1224:-81.3789,0,-74.5884	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/1:180:96,84:96:3437:84:3020:-193.522,0,-255.342	0/0:45:44,1:44:1576:1:36:0,-10.2473,-138.833	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:70:70,0:70:2496:0:0:0,-21.0721,-224.893	0/1:146:67,79:67:2412:79:2827:-187.641,0,-173.385	0/0:90:90,0:90:3223:0:0:0,-27.0927,-290.291	0/0:114:114,0:114:4083:0:0:0,-34.3174,-367.655	0/0:97:97,0:97:3488:0:0:0,-29.1999,-314.13	0/1:71:25,46:25:896:46:1639:-116.713,0,-59.5872	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:192:92,100:92:3292:100:3596:-249.173,0,-238.702	0/0:228:226,2:226:8096:2:72:0,-61.9983,-722.02	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/0:272:268,4:268:9577:4:140:0,-69.393,-849.301	0/0:83:82,0:82:2932:0:0:0,-24.6845,-263.755	0/1:113:62,51:62:2224:51:1828:-118.576,0,-166.408	0/1:246:116,130:116:4164:130:4623:-300.844,0,-300.871	0/0:304:304,0:304:10869:0:0:0,-91.5131,-977.74	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:259:107,152:107:3832:152:5439:-366.354,0,-267.11	0/1:126:44,82:44:1580:82:2936:-209.536,0,-104.562	0/0:198:198,0:198:7096:0:0:0,-59.6039,-638.694	0/1:3:2,1:2:72:1:33:-1.61808,0,-5.93363	0/1:14:10,4:10:360:4:144:-8.3197,0,-28.5299	0/1:4:3,1:3:108:1:36:-2.0949,0,-8.87105	0/1:31:21,10:21:756:10:352:-20.082,0,-59.0349	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.622	0/1:193:91,101:91:3272:101:3620:-238.947,0,-236.571	0/1:84:37,47:37:1315:47:1688:-117.105,0,-93.3645	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.055	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:140:64,76:64:2300:76:2711:-186.883,0,-165.117	0/1:45:26,19:26:928:19:673:-43.6074,0,-70.2919	0/0:199:199,0:199:7112:0:0:0,-59.905,-640.14	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.296	0/1:83:47,36:47:1688:36:1288:-80.4989,0,-127.221	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959	0/0:139:139,0:139:4996:0:0:0,-41.8432,-449.784	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/0:101:101,0:101:3609:0:0:0,-30.404,-325.01	0/1:101:48,53:48:1724:53:1896:-124.724,0,-125.041	0/1:5:2,3:2:72:3:108:-8.16742,0,-5.33157	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/0:133:133,0:133:4768:0:0:0,-40.037,-429.268	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:128:128,0:128:4596:0:0:0,-38.5318,-413.803	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.24	0/1:11:7,4:7:252:4:144:-8.89506,0,-19.7176	0/1:6:2,4:2:72:4:140:-10.1122,0,-5.03054	0/1:120:50,70:50:1796:70:2508:-176.404,0,-125.799	0/1:134:57,77:57:2048:77:2764:-193.675,0,-144.254	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:129:129,0:129:4632:0:0:0,-38.8329,-417.041	0/0:90:88,2:88:3152:2:72:0,-20.5292,-277.342	0/0:54:49,5:49:1752:5:180:0,-0.802786,-142.511	0/1:97:41,56:41:1472:56:2012:-144.301,0,-103.568	0/1:100:29,71:29:1029:71:2536:-188.121,0,-62.7272	0/1:133:43,89:43:1528:89:3179:-233.675,0,-97.738	0/1:62:30,32:30:1080:32:1144:-78.4848,0,-78.8494	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:62:33,29:33:1188:29:1040:-64.9461,0,-88.5647	0/1:34:12,22:12:432:22:784:-57.5444,0,-28.9862	0/1:154:78,76:78:2796:76:2720:-174.987,0,-205.521	0/1:89:32,57:32:1140:57:2040:-141.868,0,-76.1175	0/1:223:124,99:124:4428:99:3532:-229.97,0,-331.559	0/0:160:160,0:160:5740:0:0:0,-48.1648,-516.715	0/1:103:51,52:51:1832:52:1868:-121.934,0,-134.155	0/1:160:86,74:86:3080:74:2656:-169.063,0,-229.246	1/1:2:0,2:0:0:2:72:-6.26815,-0.60206,0	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.249	0/0:113:113,0:113:4040:0:0:0,-34.0164,-363.766	0/0:153:153,0:153:5480:0:0:0,-46.0576,-493.316	0/1:74:43,31:43:1536:31:1108:-72.5724,0,-116.257	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:143:71,72:71:2540:72:2571:-176.668,0,-185.804	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:65:32,33:32:1135:33:1184:-78.242,0,-82.8911	0/0:90:90,0:90:3236:0:0:0,-27.0927,-291.461	0/0:76:76,0:76:2728:0:0:0,-22.8783,-245.758	0/1:178:105,73:105:3756:73:2611:-163.757,0,-284.6	0/1:52:17,35:17:608:35:1256:-92.2018,0,-39.3985	0/0:110:110,0:110:3924:0:0:0,-33.1133,-353.354	0/0:107:107,0:107:3848:0:0:0,-32.2102,-346.514
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chr12	384805	.	C	T	16862.6	PASS	AB=0.49827;ABP=3.0629;AC=46;AF=0.244681;AN=188;AO=1012;CIGAR=1X;DP=4285;DPB=4285;DPRA=1.02494;EPP=2157.33;EPPR=7012.84;GTI=2;LEN=1;MEANALT=1.02041;MQM=59.9605;MQMR=59.9924;NS=94;NUMALT=1;ODDS=0.229093;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36050;QR=115493;RO=3272;RPL=5;RPP=2157.33;RPPR=7012.84;RPR=1007;RUN=1;SAF=0;SAP=2200.54;SAR=1012;SRF=0;SRP=7108.07;SRR=3272;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:17,19:17:599:19:668:-49.6062,0,-43.401	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.457	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	0/0:74:74,0:74:2627:0:0:0,-22.2762,-236.678	0/1:18:10,8:10:352:8:288:-20.8489,0,-26.5997	0/1:39:20,19:20:702:19:678:-49.6085,0,-51.7623	0/0:143:143,0:143:5066:0:0:0,-43.0473,-456.087	0/1:66:44,22:44:1549:22:792:-51.7377,0,-119.832	0/0:83:83,0:83:2922:0:0:0,-24.9855,-263.214	0/0:58:58,0:58:2055:0:0:0,-17.4597,-185.221	0/0:39:39,0:39:1366:0:0:0,-11.7402,-123.237	0/1:80:36,43:36:1232:43:1518:-112.811,0,-87.0763	0/0:55:55,0:55:1923:0:0:0,-16.5566,-173.344	0/0:55:55,0:55:1925:0:0:0,-16.5566,-173.525	0/0:44:44,0:44:1537:0:0:0,-13.2453,-138.62	0/1:38:21,17:21:729:17:600:-42.8901,0,-54.4896	0/0:25:25,0:25:871:0:0:0,-7.52575,-78.7055	0/0:19:19,0:19:653:0:0:0,-5.71957,-59.0893	0/0:32:32,0:32:1135:0:0:0,-9.63296,-102.458	0/1:63:30,33:30:1080:33:1162:-85.9189,0,-78.5484	0/0:102:102,0:102:3591:0:0:0,-30.7051,-323.396	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:24:24,0:24:838:0:0:0,-7.22472,-75.7363	0/0:67:67,0:67:2361:0:0:0,-20.169,-212.748	0/1:64:40,24:40:1428:24:850:-57.5523,0,-109.552	0/1:46:23,23:23:796:23:820:-60.2751,0,-58.1076	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:77:37,40:37:1320:40:1423:-105.187,0,-95.9226	0/1:69:33,36:33:1161:36:1284:-95.0914,0,-84.0237	0/1:53:47,6:47:1665:6:216:-3.83592,0,-134.181	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:14:8,6:8:284:6:212:-15.2104,0,-21.6889	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:84:36,48:36:1268:48:1706:-128.533,0,-89.1334	0/1:40:17,23:17:603:23:828:-62.8029,0,-42.5583	0/0:39:39,0:39:1343:0:0:0,-11.7402,-121.164	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:55:30,25:30:1065:25:896:-64.4037,0,-79.6031	0/1:17:9,8:9:316:8:288:-21.1499,0,-23.6613	0/0:38:38,0:38:1351:0:0:0,-11.4391,-121.89	0/0:39:39,0:39:1337:0:0:0,-11.7402,-120.622	0/0:43:43,0:43:1509:0:0:0,-12.9443,-136.101	0/1:47:19,28:19:671:28:984:-74.7231,0,-46.5674	0/0:78:78,0:78:2757:0:0:0,-23.4803,-248.372	0/0:78:77,1:77:2739:1:36:0,-19.8821,-243.155	0/0:50:50,0:50:1769:0:0:0,-15.0515,-159.491	0/0:40:40,0:40:1415:0:0:0,-12.0412,-127.647	0/1:64:36,28:36:1292:28:1008:-71.7704,0,-97.3178	0/1:4:2,2:2:72:2:57:-4.20919,0,-5.6326	0/0:57:57,0:57:2012:0:0:0,-17.1587,-181.351	0/0:36:36,0:36:1279:0:0:0,-10.8371,-115.412	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:49:49,0:49:1735:0:0:0,-14.7505,-156.43	0/0:40:40,0:40:1406:0:0:0,-12.0412,-126.836	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/1:48:24,24:24:864:24:856:-62.9117,0,-63.6331	0/1:60:24,36:24:864:36:1292:-98.522,0,-60.0208	0/0:7:7,0:7:233:0:0:0,-2.10721,-21.2943	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/0:70:70,0:70:2438:0:0:0,-21.0721,-219.672	0/1:44:38,6:38:1336:6:216:-6.54519,0,-107.292	0/1:20:9,11:9:324:11:396:-29.9621,0,-23.4853	0/1:50:22,28:22:788:28:1000:-75.2558,0,-56.1933	0/1:57:18,39:18:620:39:1392:-108.42,0,-38.9614	0/1:42:17,25:17:595:25:888:-67.5958,0,-41.2334	0/0:84:82,2:82:2906:2:72:0,-18.4498,-254.937	0/1:23:10,13:10:356:13:460:-34.8117,0,-25.4576	0/1:10:3,7:3:108:7:243:-19.1956,0,-7.06487	0/1:105:57,48:57:2036:48:1708:-122.398,0,-151.904	0/1:59:36,23:36:1258:23:828:-57.0833,0,-95.7575	0/1:93:41,52:41:1451:52:1860:-139.683,0,-102.889	0/0:75:74,1:74:2625:1:36:0,-18.979,-232.898	0/1:65:34,31:34:1212:31:1112:-80.8244,0,-89.8194	0/1:26:18,8:18:644:8:282:-17.8937,0,-50.4638	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.767	0/0:33:33,0:33:1164:0:0:0,-9.93399,-105.067	0/0:78:78,0:78:2760:0:0:0,-23.4803,-248.641	0/1:34:16,18:16:553:18:648:-48.4169,0,-39.859	0/0:45:45,0:45:1591:0:0:0,-13.5463,-143.48	0/0:37:37,0:37:1310:0:0:0,-11.1381,-118.2	0/1:63:26,37:26:923:37:1312:-99.4168,0,-64.4219	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:51:19,32:19:637:32:1152:-88.6376,0,-42.2893	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	0/0:33:33,0:33:1163:0:0:0,-9.93399,-104.976	0/1:80:37,43:37:1324:43:1528:-113.731,0,-95.3797	0/1:49:17,32:17:585:32:1127:-86.9861,0,-38.1348	0/0:10:10,0:10:341:0:0:0,-3.0103,-31.0178	0/0:77:77,0:77:2693:0:0:0,-23.1793,-242.614
chr12	398757	.	G	A	140051	PASS	AB=0.561932;ABP=131.308;AC=142;AF=0.763441;AN=186;AO=6930;CIGAR=1X;DP=8629;DPB=8629;DPRA=0;EPP=15025.3;EPPR=3668.48;GTI=2;LEN=1;MEANALT=1.03226;MQM=42.3225;MQMR=56.5584;NS=93;NUMALT=1;ODDS=1.22921;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=245273;QR=60640;RO=1696;RPL=6927;RPP=15025.3;RPPR=3668.48;RPR=3;RUN=1;SAF=6930;SAP=15051.3;SAR=0;SRF=1696;SRP=3685.83;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:5,9:5:180:9:312:-23.1265,0,-12.333	1/1:161:0,161:0:0:161:5688:-498.791,-48.4658,0	0/1:104:42,61:42:1512:61:2168:-159.817,0,-104.855	1/1:198:0,198:0:0:198:7025:-615.892,-59.6039,0	0/1:66:17,49:17:612:49:1732:-132.2,0,-35.5191	0/1:58:13,45:13:468:45:1600:-123.775,0,-24.9885	1/1:142:0,142:0:0:142:5036:-439.284,-42.7463,0	0/1:173:67,106:67:2383:106:3758:-277.873,0,-162.413	1/1:138:1,137:1:36:137:4845:-421.157,-37.9449,0	1/1:62:0,62:0:0:62:2184:-191.554,-18.6639,0	1/1:39:0,39:0:0:39:1385:-121.182,-11.7402,0	0/1:58:27,31:27:951:31:1104:-79.5633,0,-67.8646	1/1:35:0,35:0:0:35:1252:-109.724,-10.5361,0	1/1:49:0,49:0:0:49:1725:-152.475,-14.7505,0	1/1:39:0,39:0:0:39:1368:-118.663,-11.7402,0	0/1:38:22,16:22:783:16:569:-38.6643,0,-59.3118	1/1:127:0,127:0:0:127:4503:-394.105,-38.2308,0	1/1:36:0,36:0:0:36:1261:-111.54,-10.8371,0	1/1:14:0,14:0:0:14:504:-44.7584,-4.21442,0	0/1:191:68,123:68:2436:123:4348:-323.249,0,-161.511	1/1:119:0,119:0:0:119:4232:-370.723,-35.8226,0	1/1:139:0,139:0:0:139:4916:-433.758,-41.8432,0	1/1:107:0,107:0:0:107:3820:-333.312,-32.2102,0	1/1:77:0,77:0:0:77:2716:-238.307,-23.1793,0	0/1:54:19,35:19:684:35:1244:-93.7428,0,-45.4519	0/1:322:176,146:176:6268:146:5149:-355.152,0,-466.776	1/1:199:0,199:0:0:199:6981:-612.276,-59.905,0	1/1:24:0,24:0:0:24:848:-74.2548,-7.22472,0	0/1:249:91,157:91:3260:157:5561:-414.62,0,-218.234	0/1:140:42,98:42:1508:98:3504:-265.493,0,-92.7968	1/1:161:0,161:0:0:161:5716:-500.644,-48.4658,0	0/1:13:6,7:6:216:7:244:-17.0616,0,-15.8677	0/1:9:3,6:3:108:6:216:-16.6563,0,-7.36111	0/1:11:1,10:1:36:10:352:-27.7403,0,-0.285939	0/1:10:5,5:5:180:5:180:-13.1863,0,-13.5371	1/1:10:0,10:0:0:10:356:-31.7464,-3.0103,0	0/1:183:102,81:102:3643:81:2894:-199.739,0,-272.628	0/1:176:79,97:79:2828:97:3387:-243.804,0,-201.316	1/1:37:0,37:0:0:37:1320:-116.123,-11.1381,0	.:.:.:.:.:.:.:.	0/1:147:67,80:67:2408:80:2821:-203.672,0,-172.55	0/1:23:13,10:13:464:10:356:-24.8061,0,-35.1546	1/1:150:0,150:0:0:150:5348:-470.441,-45.1545,0	1/1:43:0,42:0:0:42:1488:-130.322,-12.6433,0	1/1:50:0,50:0:0:50:1759:-153.684,-15.0515,0	0/1:79:35,44:35:1237:44:1548:-111.403,0,-87.8211	1/1:140:0,140:0:0:140:4930:-429.351,-42.1442,0	1/1:203:0,203:0:0:203:7164:-623.789,-61.1091,0	1/1:150:0,150:0:0:150:5323:-464.44,-45.1545,0	1/1:130:0,130:0:0:130:4610:-400.834,-39.1339,0	0/1:131:46,85:46:1643:85:3005:-225.187,0,-108.681	0/1:11:3,8:3:108:8:284:-21.9444,0,-6.75657	1/1:90:0,90:0:0:90:3171:-278.301,-27.0927,0	1/1:57:1,56:1:36:56:1980:-170.975,-13.5614,0	1/1:39:0,39:0:0:39:1367:-120.951,-11.7402,0	1/1:123:0,123:0:0:123:4306:-379.212,-37.0267,0	1/1:57:0,57:0:0:57:1999:-175.531,-17.1587,0	0/1:13:5,8:5:180:8:284:-21.5694,0,-12.634	0/1:27:17,10:17:603:10:352:-22.9526,0,-46.375	0/1:79:38,41:38:1368:41:1464:-104.835,0,-99.4444	0/1:107:59,48:59:2108:48:1701:-117.04,0,-157.547	1/1:15:0,15:0:0:15:525:-46.3618,-4.51545,0	1/1:254:0,254:0:0:254:8975:-791.748,-76.4616,0	1/1:240:3,237:3:108:237:8440:-727.418,-62.1793,0	1/1:59:5,54:5:180:54:1924:-152.799,-1.21657,0	0/1:53:16,37:16:576:37:1280:-96.1738,0,-36.1828	0/1:166:65,101:65:2305:101:3557:-259.616,0,-157.263	0/1:70:40,30:40:1427:30:1060:-71.4366,0,-106.774	0/1:8:4,4:4:144:4:144:-10.6195,0,-10.9006	1/1:62:0,62:0:0:62:2185:-192.057,-18.6639,0	0/1:73:37,36:37:1332:36:1284:-90.8971,0,-98.0046	0/1:29:17,12:17:612:12:428:-29.2571,0,-46.6353	0/1:108:51,57:51:1832:57:2001:-143.554,0,-132.542	0/1:43:18,25:18:648:25:892:-65.6611,0,-45.6226	0/1:130:68,62:68:2436:62:2210:-153.197,0,-179.973	1/1:142:0,142:0:0:142:5006:-438.782,-42.7463,0	0/1:176:53,123:53:1908:123:4392:-333.192,0,-118.829	0/1:114:46,68:46:1648:68:2401:-175.885,0,-114.096	0/1:17:3,14:3:108:14:496:-38.9567,0,-4.95484	1/1:88:0,88:0:0:88:3097:-271.21,-26.4906,0	1/1:133:0,133:0:0:133:4686:-412.133,-40.037,0	1/1:191:0,191:0:0:191:6734:-590.266,-57.4967,0	0/1:80:36,44:36:1288:44:1580:-114.681,0,-91.9765	1/1:53:0,53:0:0:53:1888:-164.994,-15.9546,0	1/1:87:0,87:0:0:87:3082:-268.271,-26.1896,0	0/1:121:67,54:67:2389:54:1940:-132.781,0,-178.606	1/1:36:0,36:0:0:36:1281:-112.175,-10.8371,0	0/1:61:31,30:31:1097:30:1062:-74.623,0,-80.5785	1/1:53:0,53:0:0:53:1892:-165.677,-15.9546,0	1/1:34:0,34:0:0:34:1214:-106.295,-10.235,0	0/1:68:31,37:31:1095:37:1316:-95.8267,0,-78.1421	0/1:48:34,14:34:1224:14:504:-28.6622,0,-95.5459	1/1:110:0,110:0:0:110:3858:-336.966,-33.1133,0	1/1:76:1,75:1:36:75:2676:-229.135,-19.3756,0
chr12	452811	.	C	T	197347	PASS	AB=0.485101;ABP=11.8104;AC=142;AF=0.755319;AN=188;AO=7441;CIGAR=1X;DP=9809;DPB=9809;DPRA=52.7258;EPP=1805.1;EPPR=422.415;GTI=1;LEN=1;MEANALT=1.02151;MQM=54.8639;MQMR=59.8377;NS=94;NUMALT=1;ODDS=5.24483;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=265240;QR=83791;RO=2366;RPL=7417;RPP=15953.1;RPPR=5088.73;RPR=24;RUN=1;SAF=2456;SAP=1869.48;SAR=4985;SRF=839;SRP=437.437;SRR=1527;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:10,15:10:360:15:536:-41.0327,0,-25.2186	1/1:135:1,134:1:36:134:4789:-427.498,-37.0408,0	0/1:112:41,71:41:1476:71:2548:-195.834,0,-99.3924	1/1:191:1,190:1:32:190:6776:-602.378,-54.3022,0	0/1:94:54,39:54:1912:39:1396:-96.5504,0,-144.002	0/1:51:35,16:35:1256:16:576:-36.8036,0,-97.9928	1/1:152:2,150:2:72:150:5300:-467.79,-38.9198,0	0/1:107:47,60:47:1676:60:2152:-161.737,0,-118.917	1/1:90:0,90:0:0:90:3209:-288.756,-27.0927,0	1/1:126:0,126:0:0:126:4475:-399.867,-37.9298,0	1/1:113:0,113:0:0:113:4009:-358.576,-34.0164,0	0/1:79:38,41:38:1368:41:1476:-109.33,0,-99.6395	1/1:81:0,81:0:0:81:2897:-260.944,-24.3834,0	1/1:124:0,124:0:0:124:4428:-394.643,-37.3277,0	1/1:119:0,119:0:0:119:4222:-377.951,-35.8226,0	0/1:112:58,54:58:2064:54:1936:-139.842,0,-152.307	1/1:48:0,48:0:0:48:1724:-155.437,-14.4494,0	1/1:49:0,49:0:0:49:1764:-159.027,-14.7505,0	1/1:53:0,53:0:0:53:1904:-171.423,-15.9546,0	0/1:152:80,72:80:2832:72:2584:-185.385,0,-209.273	1/1:165:0,165:0:0:165:5904:-528.262,-49.67,0	1/1:61:0,61:0:0:61:2176:-195.819,-18.3628,0	1/1:99:0,99:0:0:99:3517:-314.09,-29.802,0	1/1:94:0,94:0:0:94:3360:-300.756,-28.2968,0	0/1:98:47,51:47:1680:51:1836:-135.457,0,-121.982	0/1:247:121,126:121:4263:126:4492:-327.627,0,-309.493	1/1:216:0,216:0:0:216:7693:-689.766,-65.0225,0	1/1:58:0,58:0:0:58:2062:-184.071,-17.4597,0	0/1:248:121,127:121:4286:127:4527:-330.77,0,-310.329	0/1:79:39,40:39:1380:40:1440:-105.718,0,-100.717	1/1:135:2,133:2:72:133:4719:-415.862,-33.8023,0	0/1:21:10,11:10:356:11:396:-29.6611,0,-26.0596	0/1:7:6,1:6:216:1:36:-1.45141,0,-17.6833	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:319:165,154:165:5800:154:5460:-392.641,0,-426.088	0/1:115:64,51:64:2280:51:1804:-126.226,0,-170.837	1/1:47:0,47:0:0:47:1692:-152.551,-14.1484,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	0/1:130:55,75:55:1944:75:2696:-202.677,0,-136.102	0/1:67:38,29:38:1356:29:1036:-73.1047,0,-102.028	1/1:197:1,196:1:36:196:6955:-619.258,-55.7046,0	1/1:150:0,150:0:0:150:5361:-479.109,-45.1545,0	1/1:95:0,95:0:0:95:3378:-302.777,-28.5979,0	0/1:115:48,66:48:1693:66:2335:-174.866,0,-117.943	1/1:63:0,63:0:0:63:2249:-202.639,-18.9649,0	1/1:110:0,110:0:0:110:3906:-349.925,-33.1133,0	1/1:136:0,136:0:0:136:4840:-433.908,-40.9401,0	1/1:162:2,160:2:72:160:5729:-507.588,-41.9301,0	0/1:161:80,81:80:2831:81:2839:-206.166,0,-206.564	0/1:8:5,3:5:180:3:108:-7.55589,0,-14.1438	1/1:74:1,73:1:36:73:2590:-229.702,-18.6779,0	1/1:44:0,44:0:0:44:1571:-140.659,-13.2453,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:122:0,122:0:0:122:4349:-389.574,-36.7257,0	1/1:61:0,61:0:0:61:2160:-192.432,-18.3628,0	0/1:15:5,10:5:180:10:360:-27.4923,0,-12.0366	0/1:7:2,5:2:68:5:180:-14.0294,0,-4.3505	0/1:88:49,39:49:1716:39:1404:-99.3454,0,-128.231	0/1:141:80,61:80:2818:61:2159:-150.833,0,-211.283	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:114:0,114:0:0:114:4100:-367.419,-34.3174,0	1/1:203:0,203:0:0:203:7217:-647.143,-61.1091,0	1/1:88:2,86:2:72:86:3076:-268.246,-19.6539,0	0/1:87:36,51:36:1272:51:1832:-137.873,0,-88.59	0/1:179:76,103:76:2673:103:3662:-274.1,0,-186.925	0/1:138:94,44:94:3316:44:1572:-99.1223,0,-257.118	0/1:65:36,29:36:1280:29:1040:-73.3812,0,-95.9235	1/1:55:0,55:0:0:55:1942:-175.025,-16.5567,0	0/1:182:100,82:100:3548:82:2908:-204.51,0,-264.742	0/1:33:19,14:19:680:14:504:-35.6202,0,-51.5933	0/1:45:25,20:25:887:20:697:-49.4988,0,-66.6018	0/1:74:39,35:39:1379:35:1256:-91.0667,0,-102.132	0/1:208:100,108:100:3560:108:3862:-284.019,0,-257.975	1/1:158:0,158:0:0:158:5628:-504.623,-47.5627,0	0/1:68:38,30:38:1333:30:1076:-75.3009,0,-99.7978	0/1:77:32,45:32:1144:45:1609:-121.821,0,-80.0902	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	1/1:135:0,135:0:0:135:4848:-434.233,-40.6391,0	1/1:85:0,85:0:0:85:3014:-271.447,-25.5876,0	1/1:303:0,303:0:0:303:10795:-967.371,-91.2121,0	0/1:148:72,76:72:2541:76:2702:-197.698,0,-184.346	1/1:105:0,105:0:0:105:3727:-334.261,-31.6082,0	1/1:135:0,135:0:0:135:4824:-431.722,-40.6391,0	0/1:254:152,102:152:5315:102:3561:-241.825,0,-402.024	1/1:33:0,33:0:0:33:1188:-107.212,-9.93399,0	0/1:89:42,47:42:1504:47:1673:-123.274,0,-108.863	1/1:51:0,51:0:0:51:1832:-165.144,-15.3525,0	1/1:78:0,78:0:0:78:2792:-248.82,-23.4803,0	0/1:159:80,79:80:2836:79:2840:-206.124,0,-207.613	0/1:127:91,36:91:3248:36:1288:-77.0314,0,-254.304	1/1:110:1,109:1:36:109:3873:-343.154,-29.515,0	1/1:202:3,199:3:104:199:7094:-625.345,-51.1053,0
chr12	455162	.	G	A	41245.9	PASS	AB=0.518129;ABP=16.3163;AC=44;AF=0.234043;AN=188;AO=2438;CIGAR=1X;DP=9846;DPB=9846;DPRA=1.15363;EPP=5288.38;EPPR=15967.8;GTI=0;LEN=1;MEANALT=1.03704;MQM=59.9327;MQMR=59.9895;NS=94;NUMALT=1;ODDS=2.05194;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=87035;QR=264493;RO=7400;RPL=1;RPP=5288.38;RPPR=15967.8;RPR=2437;RUN=1;SAF=2438;SAP=5297.06;SAR=0;SRF=7400;SRP=16071.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:33,21:33:1180:21:752:-51.7506,0,-90.2524	0/0:107:105,2:105:3768:2:72:0,-25.3735,-332.482	0/1:185:103,82:103:3675:82:2944:-209.503,0,-275.263	0/0:218:218,0:218:7783:0:0:0,-65.6245,-700.503	0/1:17:6,11:6:216:11:396:-30.8652,0,-14.673	0/1:45:24,21:24:856:21:756:-54.8209,0,-63.8134	0/0:85:85,0:85:3021:0:0:0,-25.5875,-272.12	0/1:115:55,60:55:1952:60:2110:-155.548,0,-141.335	0/0:165:165,0:165:5899:0:0:0,-49.6699,-531.014	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:72:71,0:71:2540:0:0:0,-21.3731,-228.641	0/1:107:47,60:47:1684:60:2152:-161.723,0,-119.637	0/0:100:100,0:100:3583:0:0:0,-30.103,-322.676	0/0:153:153,0:153:5471:0:0:0,-46.0576,-492.518	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:97:48,49:48:1716:49:1764:-129.844,0,-125.526	0/0:67:66,1:66:2368:1:36:0,-16.5707,-209.78	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.823	0/1:134:68,66:68:2448:66:2372:-173.398,0,-180.236	0/0:193:192,1:192:6859:1:36:0,-54.5005,-613.782	0/0:77:75,2:75:2683:2:72:0,-16.3426,-234.878	0/0:110:109,0:109:3896:0:0:0,-32.8123,-350.475	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:72:25,47:25:896:47:1676:-129.453,0,-59.2862	0/1:260:106,154:106:3788:154:5489:-415.858,0,-262.851	0/0:251:251,0:251:8955:0:0:0,-75.5585,-805.932	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:228:134,94:134:4804:94:3318:-230.203,0,-363.88	0/1:189:98,91:98:3508:91:3252:-236.004,0,-259.036	0/0:161:158,3:158:5648:3:108:0,-38.3907,-498.366	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:16:14,2:14:495:2:72:-2.02024,0,-40.0666	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:198:88,109:88:3135:109:3912:-292.61,0,-222.714	0/1:102:48,54:48:1712:54:1928:-143.092,0,-123.661	0/0:85:85,0:85:3038:0:0:0,-25.5875,-273.649	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:124:60,64:60:2139:64:2279:-168.043,0,-155.45	0/1:48:28,20:28:995:20:720:-50.6793,0,-75.4146	0/0:211:211,0:211:7548:0:0:0,-63.5173,-679.361	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:110:51,59:51:1810:59:2112:-157.031,0,-130.067	0/0:118:118,0:118:4189:0:0:0,-35.5215,-377.193	0/0:172:171,1:171:6106:1:36:0,-48.1789,-546.043	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.232	0/0:131:131,0:131:4679:0:0:0,-39.4349,-421.272	0/1:192:118,74:118:4211:74:2611:-177.437,0,-321.374	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:175:175,0:175:6252:0:0:0,-52.6802,-562.777	0/0:129:129,0:129:4576:0:0:0,-38.8329,-412	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:187:184,2:184:6592:2:68:0,-49.8269,-586.925	0/0:23:22,0:22:792:0:0:0,-6.62266,-71.2458	0/1:12:8,4:8:284:4:140:-9.33222,0,-22.291	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	0/1:100:59,41:59:2092:41:1472:-102.673,0,-158.445	0/1:137:68,69:68:2436:69:2468:-181.133,0,-178.254	0/0:6:5,0:5:180:0:0:0,-1.50515,-16.1922	0/0:181:179,0:179:6378:0:0:0,-53.8844,-573.772	0/0:172:171,1:171:6115:1:36:0,-48.1789,-546.851	0/0:109:100,9:100:3571:9:320:0,-3.66991,-292.455	0/1:88:39,49:39:1387:49:1750:-131.265,0,-98.6375	0/1:198:108,90:108:3859:90:3213:-229.717,0,-287.902	0/1:258:80,178:80:2859:178:6365:-495.275,0,-179.881	0/1:68:36,32:36:1288:32:1148:-83.1598,0,-95.7535	0/0:58:58,0:58:2068:0:0:0,-17.4597,-186.391	0/1:58:20,38:20:703:38:1368:-105.96,0,-46.1338	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	0/1:140:70,70:70:2520:70:2504:-183.468,0,-184.907	0/1:107:46,61:46:1652:61:2172:-163.536,0,-116.758	0/1:325:148,177:148:5287:177:6309:-470.068,0,-378.062	0/0:179:179,0:179:6396:0:0:0,-53.8844,-575.73	0/1:93:51,42:51:1824:42:1492:-106.579,0,-136.444	0/1:127:64,63:64:2287:63:2252:-164.71,0,-167.86	0/1:11:4,7:4:144:7:229:-17.6175,0,-10.0023	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.297	0/0:102:102,0:102:3637:0:0:0,-30.7051,-327.534	0/0:167:167,0:167:5962:0:0:0,-50.272,-536.688	0/1:48:24,24:24:864:24:844:-61.8249,0,-63.6331	0/0:91:91,0:91:3252:0:0:0,-27.3937,-292.902	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:144:67,77:67:2404:77:2756:-204.934,0,-173.268	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:101:49,52:49:1752:52:1853:-136.645,0,-127.56	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.903	0/1:190:79,111:79:2828:111:3965:-299.833,0,-197.563	0/1:79:28,51:28:1000:51:1828:-141.02,0,-66.534	0/0:95:95,0:95:3389:0:0:0,-28.5978,-305.224	0/0:90:89,1:89:3192:1:36:0,-23.4944,-283.86
chr12	462695	.	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chr12	977444	.	G	A	122090	PASS	AB=0.408187;ABP=319.609;AC=142;AF=0.763441;AN=186;AO=5872;CIGAR=1X;DP=8447;DPB=8447;DPRA=0;EPP=12753.9;EPPR=5590.21;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.9596;MQMR=59.9961;NS=93;NUMALT=1;ODDS=2.94285;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210312;QR=92022;RO=2573;RPL=5872;RPP=12753.9;RPPR=5590.21;RPR=0;RUN=1;SAF=0;SAP=12753.9;SAR=5872;SRF=0;SRP=5590.21;SRR=2573;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:27,9:27:964:9:320:-18.3053,0,-76.2397	1/1:56:0,56:0:0:56:2012:-181.353,-16.8577,0	0/1:132:81,51:81:2888:51:1832:-125.425,0,-220.421	1/1:185:0,185:0:0:185:6640:-597.675,-55.6906,0	0/1:57:49,8:49:1732:8:288:-9.1087,0,-139.006	0/1:26:13,13:13:456:13:468:-34.6329,0,-33.5326	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:117:82,35:82:2928:35:1260:-78.4826,0,-228.535	1/1:105:0,105:0:0:105:3749:-337.609,-31.6082,0	1/1:135:0,135:0:0:135:4828:-433.899,-40.6391,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:104:49,55:49:1756:55:1976:-146.808,0,-127.017	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	1/1:65:1,64:1:36:64:2292:-202.934,-15.9687,0	1/1:97:0,97:0:0:97:3484:-313.77,-29.1999,0	0/1:51:21,30:21:752:30:1076:-81.8003,0,-52.6537	1/1:51:0,51:0:0:51:1803:-162.547,-15.3525,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:17:0,17:0:0:17:599:-54.2381,-5.11751,0	0/1:160:87,73:87:3124:73:2616:-187.521,0,-233.221	1/1:134:0,134:0:0:134:4804:-432.513,-40.338,0	1/1:57:0,57:0:0:57:2036:-183.512,-17.1587,0	1/1:281:0,281:0:0:281:10038:-903.355,-84.5894,0	1/1:57:0,57:0:0:57:2044:-184.227,-17.1587,0	0/1:47:27,19:27:964:19:680:-47.3221,0,-72.8697	0/1:324:180,144:180:6452:144:5168:-367.669,0,-483.232	1/1:196:0,196:0:0:196:7048:-634.376,-59.0019,0	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:257:148,108:148:5280:108:3864:-270.68,0,-398.063	0/1:102:58,44:58:2076:44:1580:-111.786,0,-156.405	1/1:119:0,119:0:0:119:4256:-383.218,-35.8226,0	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/1:10:3,7:3:108:7:252:-20.0187,0,-7.06487	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:211:110,101:110:3948:101:3636:-263.926,0,-291.993	0/1:166:106,60:106:3796:60:2128:-141.818,0,-291.867	1/1:28:0,28:0:0:28:985:-88.9615,-8.42884,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:109:72,37:72:2584:37:1328:-87.01,0,-199.997	0/1:32:12,20:12:432:20:716:-55.1348,0,-29.5882	1/1:72:0,72:0:0:72:2576:-232.085,-21.6742,0	1/1:55:0,55:0:0:55:1975:-178.025,-16.5567,0	1/1:57:0,57:0:0:57:2040:-183.87,-17.1587,0	0/1:176:107,69:107:3832:69:2480:-170.472,0,-292.095	1/1:61:0,61:0:0:61:2192:-197.541,-18.3628,0	1/1:133:0,133:0:0:133:4749:-427.568,-40.037,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	0/1:151:95,56:95:3404:56:2008:-135.538,0,-261.119	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:99:0,99:0:0:99:3544:-319.169,-29.802,0	1/1:44:2,42:2:72:42:1504:-128.818,-6.4086,0	.:.:.:.:.:.:.:.	1/1:143:1,142:1:36:142:5065:-452.397,-39.449,0	1/1:63:1,62:1:36:62:2212:-195.747,-15.3666,0	0/1:7:2,5:2:72:5:165:-13.0664,0,-4.72951	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	0/1:84:48,36:48:1712:36:1296:-91.6574,0,-129.079	0/1:84:41,43:41:1472:43:1540:-113.607,0,-107.49	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:257:0,257:0:0:257:9196:-827.612,-77.3647,0	0/1:181:107,74:107:3844:74:2629:-182.37,0,-291.668	1/1:114:6,108:6:216:108:3872:-328.884,-14.5269,0	0/1:77:38,39:38:1360:39:1404:-103.48,0,-99.5213	0/1:231:135,96:135:4801:96:3436:-239.545,0,-362.71	0/1:179:126,53:126:4505:53:1889:-116.397,0,-351.733	0/1:10:6,4:6:212:4:144:-10.3033,0,-16.4145	1/1:50:0,50:0:0:50:1791:-161.459,-15.0515,0	0/1:71:41,30:41:1464:30:1072:-75.4193,0,-110.683	0/1:7:3,4:3:108:4:136:-10.4683,0,-7.96796	0/1:143:88,55:88:3140:55:1968:-134.34,0,-239.779	0/1:58:36,22:36:1292:22:788:-53.7851,0,-99.124	0/1:220:125,95:125:4444:95:3389:-238.998,0,-333.908	1/1:159:0,159:0:0:159:5704:-513.388,-47.8638,0	0/1:143:127,16:127:4544:16:576:-9.1277,0,-366.08	0/1:131:72,59:72:2580:59:2116:-151.274,0,-193.014	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:73:1,72:1:36:72:2584:-229.211,-18.3769,0	1/1:68:0,68:0:0:68:2416:-217.696,-20.47,0	1/1:174:0,174:0:0:174:6236:-561.335,-52.3792,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	1/1:91:0,91:0:0:91:3268:-294.34,-27.3937,0	1/1:49:3,46:3:108:46:1648:-138.533,-4.6753,0	0/1:159:78,81:78:2792:81:2907:-213.631,0,-203.657	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:74:46,28:46:1652:28:1008:-68.7601,0,-126.692	1/1:58:0,58:0:0:58:2071:-186.661,-17.4597,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:48:19,29:19:680:29:1044:-79.8254,0,-47.0797	0/1:77:57,20:57:2040:20:716:-41.5884,0,-160.693	1/1:104:0,104:0:0:104:3736:-336.439,-31.3071,0	1/1:103:1,102:1:36:102:3656:-325.64,-27.4078,0
chr12	1006179	.	A	G	156758	PASS	AB=0.519515;ABP=24.283;AC=142;AF=0.755319;AN=188;AO=7695;CIGAR=1X;DP=10797;DPB=10797;DPRA=0;EPP=16599.8;EPPR=6645.77;GTI=1;LEN=1;MEANALT=1.07447;MQM=59.9871;MQMR=59.9929;NS=94;NUMALT=1;ODDS=0.690379;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272899;QR=109409;RO=3095;RPL=7682;RPP=16599.8;RPPR=6645.77;RPR=13;RUN=1;SAF=7693;SAP=16695.1;SAR=2;SRF=3095;SRP=6723.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:11,11:11:392:11:380:-27.9093,0,-28.9974	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:55:29,26:29:1008:26:905:-65.2056,0,-74.4714	1/1:144:0,143:0:0:143:5086:-457.684,-43.0473,0	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3501	0/1:32:14,18:14:500:18:620:-46.4872,0,-35.7032	1/1:63:1,62:1:36:62:2170:-191.966,-15.3666,0	0/1:78:33,45:33:1160:45:1593:-120.18,0,-81.2263	1/1:52:0,52:0:0:52:1838:-165.699,-15.6536,0	1/1:54:0,54:0:0:54:1921:-173.165,-16.2556,0	1/1:255:2,253:2:72:253:8935:-797.3,-69.9259,0	0/1:58:28,30:28:1008:30:1055:-77.7692,0,-73.5766	1/1:55:0,55:0:0:55:1946:-175.415,-16.5567,0	1/1:34:0,33:0:0:33:1157:-104.075,-9.93399,0	1/1:46:0,46:0:0:46:1630:-146.987,-13.8474,0	0/1:21:12,9:12:419:9:307:-21.6386,0,-31.721	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	1/1:94:0,94:0:0:94:3338:-300.638,-28.2968,0	0/1:77:55,22:55:1960:22:779:-47.2528,0,-153.496	1/1:84:1,83:1:36:83:2950:-262.136,-21.6882,0	1/1:30:0,30:0:0:30:1068:-96.4321,-9.0309,0	1/1:82:0,82:0:0:82:2861:-257.727,-24.6845,0	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	0/1:52:18,34:18:640:34:1220:-94.4532,0,-42.2758	0/1:148:74,74:74:2613:74:2652:-194.374,0,-190.866	1/1:121:0,121:0:0:121:4275:-384.932,-36.4246,0	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	0/1:125:59,66:59:2100:66:2360:-175.03,0,-151.641	0/1:74:31,43:31:1089:43:1535:-116.166,0,-76.0411	1/1:50:0,50:0:0:50:1788:-161.203,-15.0515,0	0/1:487:236,250:236:8388:250:8833:-648.306,0,-608.274	0/1:440:277,163:277:9819:163:5819:-391.371,0,-751.211	0/1:77:36,41:36:1276:41:1452:-107.795,0,-91.9638	0/1:442:258,184:258:9072:184:6503:-452.307,0,-683.418	1/1:624:0,624:0:0:624:22235:-2000.58,-187.843,0	0/1:83:30,53:30:1059:53:1850:-141.79,0,-70.6349	0/1:43:25,18:25:876:18:644:-45.3463,0,-66.2128	1/1:187:0,187:0:0:187:6654:-598.939,-56.2926,0	0/1:155:81,74:81:2869:74:2652:-192.266,0,-211.788	0/1:81:28,53:28:992:53:1880:-145.093,0,-65.211	0/1:155:70,85:70:2488:85:3006:-224.111,0,-177.514	1/1:77:0,77:0:0:77:2745:-247.293,-23.1793,0	1/1:42:0,42:0:0:42:1482:-133.672,-12.6433,0	1/1:38:0,38:0:0:38:1326:-119.635,-11.4391,0	0/1:51:21,30:21:752:30:1072:-81.4399,0,-52.6537	1/1:31:0,31:0:0:31:1101:-99.3997,-9.33193,0	1/1:176:0,176:0:0:176:6250:-562.598,-52.9813,0	1/1:39:0,39:0:0:39:1387:-125.128,-11.7402,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:44:22,22:22:780:22:792:-58.3604,0,-57.2777	0/1:349:144,205:144:5107:205:7285:-550.645,0,-354.719	1/1:43:0,43:0:0:43:1536:-138.533,-12.9443,0	1/1:30:0,30:0:0:30:1067:-96.3412,-9.0309,0	1/1:260:0,260:0:0:260:9173:-825.551,-78.2678,0	1/1:58:0,58:0:0:58:2067:-186.3,-17.4597,0	1/1:58:0,58:0:0:58:2067:-186.3,-17.4597,0	0/1:380:91,288:91:3220:288:10231:-806.275,0,-175.573	0/1:384:181,203:181:6421:203:7226:-534.801,0,-462.385	0/1:57:35,22:35:1240:22:784:-53.7252,0,-94.7457	0/1:41:19,22:19:684:22:779:-58.0898,0,-49.5481	1/1:470:2,468:2:72:468:16620:-1488.62,-134.647,0	1/1:76:0,76:0:0:76:2700:-243.244,-22.8783,0	0/1:62:25,37:25:885:37:1328:-101.158,0,-61.3027	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.6223	0/1:29:15,14:15:536:14:492:-35.8825,0,-39.8449	0/1:78:51,27:51:1785:27:955:-62.7845,0,-137.26	0/1:76:46,30:46:1617:30:1076:-74.2746,0,-122.939	0/1:272:125,147:125:4456:147:5154:-382.12,0,-319.332	1/1:45:0,45:0:0:45:1586:-143.029,-13.5464,0	0/1:26:15,11:15:527:11:387:-27.3392,0,-39.9334	0/1:468:214,253:214:7551:253:9014:-670.299,0,-538.699	0/1:53:17,36:17:595:36:1288:-100.269,0,-37.9221	0/1:70:35,35:35:1252:35:1247:-91.462,0,-91.913	0/1:62:32,30:32:1136:30:1046:-75.7772,0,-83.885	1/1:73:0,73:0:0:73:2599:-234.158,-21.9752,0	0/1:74:28,46:28:996:46:1636:-125.252,0,-67.6787	0/1:76:33,43:33:1161:43:1499:-112.321,0,-81.9165	0/1:386:213,173:213:7434:173:6165:-438.753,0,-552.923	1/1:48:1,47:1:36:47:1670:-146.988,-10.8512,0	1/1:22:0,22:0:0:22:772:-69.7994,-6.62266,0	1/1:70:1,69:1:36:69:2436:-215.897,-17.4738,0	1/1:42:0,42:0:0:42:1480:-133.492,-12.6433,0	1/1:38:0,37:0:0:37:1317:-118.47,-11.1381,0	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	0/1:83:45,38:45:1594:38:1318:-93.9296,0,-118.763	1/1:21:0,21:0:0:21:747:-67.5543,-6.32163,0	0/1:36:14,22:14:496:22:757:-57.6089,0,-34.1372	1/1:53:0,53:0:0:53:1882:-169.657,-15.9546,0	1/1:269:0,268:0:0:268:9495:-854.154,-80.676,0	0/1:482:219,263:219:7692:263:9294:-691.342,0,-547.228	0/1:49:25,24:25:868:24:842:-61.3466,0,-63.6825	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:79:0,79:0:0:79:2779:-250.35,-23.7814,0
chr12	1007656	.	A	G	122965	PASS	AB=0.487067;ABP=8.29019;AC=145;AF=0.771277;AN=188;AO=5877;CIGAR=1X;DP=7758;DPB=7758;DPRA=41.6989;EPP=12764.8;EPPR=4061.51;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.993;MQMR=60;NS=94;NUMALT=1;ODDS=0.212207;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208573;QR=67236;RO=1877;RPL=0;RPP=12764.8;RPPR=4061.51;RPR=5877;RUN=1;SAF=0;SAP=12764.8;SAR=5877;SRF=0;SRP=4078.86;SRR=1877;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:24,19:24:860:19:664:-47.1393,0,-64.7775	1/1:123:0,123:0:0:123:4399:-396.083,-37.0267,0	0/1:85:50,35:50:1791:35:1254:-87.5774,0,-135.884	1/1:100:0,100:0:0:100:3584:-322.767,-30.103,0	0/1:33:26,7:26:932:7:228:-10.9036,0,-74.2649	0/1:78:37,41:37:1332:41:1468:-108.936,0,-96.702	1/1:97:0,97:0:0:97:3463:-311.882,-29.1999,0	0/1:149:68,81:68:2440:81:2881:-214.673,0,-175.001	1/1:97:0,97:0:0:97:3447:-310.444,-29.1999,0	1/1:47:0,47:0:0:47:1671:-150.677,-14.1484,0	1/1:63:0,63:0:0:63:2260:-203.663,-18.9649,0	0/1:89:54,35:54:1917:35:1232:-84.3924,0,-146.013	1/1:86:1,85:1:36:85:2996:-266.272,-22.2903,0	1/1:122:1,121:1:36:121:4297:-383.286,-33.1274,0	1/1:79:0,79:0:0:79:2800:-252.239,-23.7814,0	0/1:69:42,27:42:1504:27:957:-65.6728,0,-114.884	1/1:94:0,94:0:0:94:3336:-300.457,-28.2968,0	1/1:67:1,66:1:36:66:2320:-205.461,-16.5707,0	1/1:48:0,48:0:0:48:1690:-152.385,-14.4494,0	0/1:114:51,63:51:1817:63:2247:-168.175,0,-129.492	1/1:119:0,119:0:0:119:4170:-375.482,-35.8226,0	1/1:122:0,122:0:0:122:4309:-387.933,-36.7257,0	1/1:79:0,79:0:0:79:2820:-254.038,-23.7814,0	1/1:100:0,100:0:0:100:3552:-319.887,-30.103,0	0/1:41:22,19:22:792:19:680:-49.1869,0,-59.2634	0/1:266:136,130:136:4880:130:4612:-335.17,0,-359.277	1/1:135:0,135:0:0:135:4804:-432.516,-40.6391,0	1/1:53:0,53:0:0:53:1861:-167.768,-15.9546,0	0/1:181:106,75:106:3799:75:2678:-186.778,0,-287.62	0/1:93:54,39:54:1936:39:1404:-98.6635,0,-146.521	1/1:130:1,129:1:36:129:4615:-411.915,-35.5356,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:2,3:2:72:3:99:-7.73143,0,-5.33157	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:3:0,3:0:0:3:100:-9.33044,-0.90309,0	0/1:260:133,127:133:4764:127:4548:-331.218,0,-350.649	0/1:106:56,50:56:2008:50:1779:-128.483,0,-149.084	1/1:91:0,91:0:0:91:3166:-285.162,-27.3937,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:84:40,44:40:1436:44:1576:-116.845,0,-104.251	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	1/1:127:0,127:0:0:127:4483:-403.641,-38.2308,0	1/1:96:0,95:0:0:95:3362:-302.436,-28.5979,0	1/1:73:0,72:0:0:72:2559:-230.201,-21.6742,0	0/1:105:54,51:54:1932:51:1823:-132.743,0,-142.548	1/1:106:0,106:0:0:106:3718:-334.823,-31.9092,0	1/1:63:0,63:0:0:63:2226:-200.604,-18.9649,0	1/1:150:1,148:1:36:148:5256:-469.582,-41.615,0	1/1:106:0,106:0:0:106:3728:-335.724,-31.9092,0	0/1:157:75,82:75:2696:82:2918:-215.593,0,-195.622	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:66:1,65:1:36:65:2315:-205.012,-16.2697,0	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	1/1:16:0,16:0:0:16:560:-50.7287,-4.81648,0	1/1:92:1,91:1:36:91:3202:-284.806,-24.0965,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/1:77:41,36:41:1472:36:1287:-92.9535,0,-109.597	0/1:107:55,52:55:1980:52:1855:-135.019,0,-146.264	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:171:0,170:0:0:170:6067:-545.772,-51.1751,0	0/1:139:78,61:78:2796:61:2156:-152.464,0,-210.037	1/1:54:4,50:4:144:50:1771:-146.347,-2.942,0	0/1:56:31,25:31:1108:25:883:-62.9298,0,-83.1733	0/1:127:58,69:58:2076:69:2468:-184.143,0,-148.88	0/1:73:48,25:48:1715:25:892:-58.6245,0,-132.66	0/1:30:12,18:12:428:18:644:-49.2597,0,-29.8279	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:98:51,47:51:1832:47:1676:-121.626,0,-135.66	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	0/1:37:21,16:21:756:16:568:-40.3138,0,-57.2291	0/1:68:36,32:36:1277:32:1140:-82.4392,0,-94.7611	0/1:150:66,84:66:2353:84:3007:-225.706,0,-166.873	1/1:86:0,86:0:0:86:3054:-275.09,-25.8886,0	0/1:65:23,42:23:824:42:1474:-113.385,0,-54.9164	0/1:84:38,46:38:1359:46:1618:-120.62,0,-97.3233	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:61:0,61:0:0:61:2172:-195.747,-18.3628,0	1/1:94:0,94:0:0:94:3355:-302.167,-28.2968,0	1/1:101:0,101:0:0:101:3603:-324.477,-30.404,0	1/1:121:0,121:0:0:121:4252:-382.859,-36.4246,0	1/1:80:0,80:0:0:80:2833:-255.207,-24.0824,0	1/1:113:0,113:0:0:113:3977:-358.123,-34.0164,0	0/1:166:73,93:73:2609:93:3327:-249.676,0,-185.085	1/1:38:0,38:0:0:38:1346:-121.438,-11.4391,0	0/1:100:49,51:49:1751:51:1789:-131.185,0,-127.77	1/1:85:0,85:0:0:85:3020:-272.031,-25.5876,0	1/1:50:0,50:0:0:50:1762:-158.862,-15.0515,0	0/1:98:42,56:42:1508:56:1990:-149.872,0,-106.514	0/1:112:71,41:71:2540:41:1414:-93.8364,0,-195.136	1/1:91:0,91:0:0:91:3235:-291.371,-27.3937,0	1/1:120:0,120:0:0:120:4276:-385.017,-36.1236,0
chr12	1014933	.	TCCCCCAGA	TCCCCCCGA	111390	PASS	AB=0.592696;ABP=191.011;AC=146;AF=0.784946;AN=186;AO=5191;CIGAR=6M1X2M;DP=6305;DPB=6303.33;DPRA=0;EPP=11275.1;EPPR=2161.45;GTI=3;LEN=1;MEANALT=2.04301;MQM=59.9191;MQMR=59.9628;NS=93;NUMALT=1;ODDS=0.163217;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185142;QR=34469;RO=994;RPL=0;RPP=11275.1;RPPR=2161.45;RPR=5191;RUN=1;SAF=5191;SAP=11275.1;SAR=0;SRF=994;SRP=2161.45;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:11,11:11:379:11:388:-28.6323,0,-27.8189	1/1:124:0,120:0:0:120:4296:-386.502,-36.1236,0	0/1:81:33,48:33:1152:48:1724:-130.972,0,-79.6037	1/1:157:1,151:1:35:151:5362:-479.027,-42.5998,0	0/1:40:13,27:13:455:27:964:-75.0356,0,-29.2422	0/1:35:12,20:12:423:20:712:-54.4565,0,-28.4532	1/1:86:0,85:0:0:85:3036:-273.088,-25.5876,0	0/1:59:21,37:21:726:37:1324:-101.625,0,-47.9176	1/1:44:0,43:0:0:43:1536:-138.145,-12.9443,0	1/1:76:0,76:0:0:76:2728:-245.758,-22.8783,0	1/1:46:0,45:0:0:45:1608:-144.736,-13.5464,0	0/1:64:39,25:39:1345:25:888:-60.9731,0,-102.08	1/1:37:0,36:0:0:36:1284:-115.568,-10.8371,0	1/1:30:0,28:0:0:28:1000:-90.0257,-8.42884,0	1/1:37:0,35:0:0:35:1252:-112.696,-10.5361,0	0/1:34:22,12:22:772:12:423:-28.17,0,-59.5669	1/1:40:0,39:0:0:39:1389:-124.987,-11.7402,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:38:0,36:0:0:36:1288:-115.906,-10.8371,0	0/1:125:19,105:19:666:105:3744:-299.553,0,-22.6535	1/1:107:0,103:0:0:103:3692:-332.197,-31.0061,0	1/1:109:0,109:0:0:109:3870:-348.491,-32.8123,0	1/1:57:0,56:0:0:56:2008:-180.711,-16.8577,0	1/1:46:0,46:0:0:46:1648:-148.604,-13.8474,0	0/1:37:22,15:22:753:15:540:-37.7984,0,-56.9492	0/1:173:53,118:53:1836:118:4195:-325.918,0,-113.705	1/1:139:0,135:0:0:135:4836:-435.11,-40.6391,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:152:46,103:46:1594:103:3645:-283.094,0,-98.589	0/1:85:26,59:26:896:59:2100:-163.682,0,-55.3662	1/1:83:0,80:0:0:80:2840:-255.518,-24.0824,0	0/1:10:1,9:1:35:9:324:-26.4956,0,-0.488329	0/1:11:5,6:5:174:6:216:-16.4792,0,-12.6903	.:.:.:.:.:.:.:.	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:10:0,10:0:0:10:360:-32.5344,-3.0103,0	0/1:128:68,58:68:2357:58:2064:-147.742,0,-174.101	0/1:150:58,89:58:1999:89:3180:-241.842,0,-135.603	1/1:56:0,56:0:0:56:2008:-180.993,-16.8577,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:87:18,69:18:624:69:2464:-195.825,0,-30.2952	0/1:26:12,13:12:423:13:455:-33.4991,0,-30.6225	1/1:105:0,103:0:0:103:3645:-327.97,-31.0061,0	1/1:44:0,44:0:0:44:1574:-141.68,-13.2453,0	1/1:48:0,47:0:0:47:1680:-151.166,-14.1484,0	0/1:57:28,26:28:966:26:932:-67.5836,0,-70.637	1/1:124:0,122:0:0:122:4347:-390.906,-36.7257,0	1/1:141:0,138:0:0:138:4915:-442.173,-41.5421,0	1/1:99:1,95:1:32:95:3392:-302.305,-26.0153,0	1/1:157:0,156:0:0:156:5580:-502.03,-46.9607,0	0/1:89:36,52:36:1246:52:1847:-139.698,0,-85.6311	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:78:1,76:1:33:76:2716:-241.37,-20.225,0	1/1:38:0,38:0:0:38:1348:-121.62,-11.4391,0	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	1/1:174:0,169:0:0:169:6044:-543.736,-50.8741,0	1/1:32:0,31:0:0:31:1112:-100.032,-9.33193,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	0/1:12:7,5:7:245:5:176:-12.5727,0,-18.7787	0/1:42:19,22:19:672:22:788:-58.5905,0,-48.1528	0/1:78:45,32:45:1559:32:1135:-78.9191,0,-117.062	1/1:6:0,5:0:0:5:180:-16.2172,-1.50515,0	1/1:203:0,196:0:0:196:7026:-632.1,-59.0019,0	0/1:93:27,64:27:938:64:2284:-178.069,0,-56.9815	1/1:57:3,52:3:106:52:1864:-158.148,-7.02472,0	0/1:63:16,44:16:557:44:1549:-121.35,0,-32.1026	0/1:111:28,80:28:964:80:2864:-225.142,0,-54.2153	0/1:67:31,36:31:1078:36:1271:-94.4157,0,-77.1595	0/1:8:3,5:3:104:5:180:-14.1438,0,-7.29457	1/1:55:0,54:0:0:54:1928:-173.437,-16.2556,0	0/1:43:25,17:25:865:17:608:-42.0962,0,-65.2106	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63353	0/1:54:19,33:19:654:33:1176:-90.1864,0,-43.2195	0/1:53:17,36:17:586:36:1280:-99.5486,0,-37.1097	0/1:47:26,19:26:889:19:684:-48.0654,0,-66.5	1/1:168:2,165:2:72:165:5873:-521.847,-43.7951,0	0/1:55:12,41:12:409:41:1456:-115.092,0,-20.8891	0/1:51:22,29:22:758:29:1036:-78.2014,0,-53.0764	0/1:13:2,11:2:69:11:396:-32.0694,0,-2.63927	1/1:118:0,118:0:0:118:4208:-378.903,-35.5215,0	1/1:162:0,157:0:0:157:5596:-503.449,-47.2617,0	1/1:138:0,134:0:0:134:4787:-430.614,-40.338,0	1/1:81:0,81:0:0:81:2887:-260.067,-24.3834,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	1/1:70:0,70:0:0:70:2487:-223.812,-21.0721,0	0/1:93:49,44:49:1716:44:1545:-111.343,0,-126.722	1/1:33:0,32:0:0:32:1144:-102.987,-9.63296,0	0/1:46:24,20:24:842:20:712:-50.8019,0,-62.4933	1/1:48:0,47:0:0:47:1667:-149.958,-14.1484,0	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	0/1:57:28,29:28:988:29:1036:-76.3952,0,-72.0757	0/1:57:39,17:39:1337:17:599:-37.021,0,-103.41	1/1:62:0,57:0:0:57:2040:-183.583,-17.1587,0	1/1:61:0,60:0:0:60:2143:-192.883,-18.0618,0
chr12	1032383	.	G	T	19342.2	PASS	AB=0.544668;ABP=71.1008;AC=44;AF=0.234043;AN=188;AO=2158;CIGAR=1X;DP=7907;DPB=7907;DPRA=1.22984;EPP=4689.05;EPPR=12480.3;GTI=4;LEN=1;MEANALT=1.03922;MQM=27.2081;MQMR=47.287;NS=94;NUMALT=1;ODDS=2.07834;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=76354;QR=203957;RO=5746;RPL=2156;RPP=4671.69;RPPR=12480.3;RPR=2;RUN=1;SAF=2156;SAP=4671.69;SAR=2;SRF=5746;SRP=12480.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:62:31,31:31:1096:31:1085:-56.5619,0,-78.0611	0/0:78:78,0:78:2787:0:0:0,-23.4803,-245.81	0/1:172:73,99:73:2586:99:3531:-192.05,0,-175.392	0/0:203:203,0:203:7226:0:0:0,-61.1091,-645.486	0/1:40:23,17:23:824:17:608:-28.1768,0,-61.788	0/1:33:14,19:14:504:19:672:-36.5398,0,-35.0822	0/0:103:103,0:103:3677:0:0:0,-31.0061,-329.233	0/1:163:80,83:80:2840:83:2967:-154.832,0,-203.294	0/0:97:97,0:97:3442:0:0:0,-29.1999,-303.567	0/0:90:90,0:90:3203:0:0:0,-27.0927,-285.621	0/0:49:48,1:48:1699:1:36:0,-12.1019,-149.096	0/1:83:50,33:50:1766:33:1143:-54.7508,0,-131.065	0/0:64:64,0:64:2292:0:0:0,-19.2659,-201.187	0/0:45:45,0:45:1578:0:0:0,-13.5463,-140.684	0/0:46:46,0:46:1648:0:0:0,-13.8474,-147.683	0/1:38:10,28:10:356:28:986:-55.1256,0,-20.6728	0/0:27:27,0:27:955:0:0:0,-8.12781,-84.2389	0/0:29:29,0:29:1036:0:0:0,-8.72987,-91.8319	0/0:22:22,0:22:767:0:0:0,-6.62266,-68.394	0/1:160:69,91:69:2468:91:3264:-167.415,0,-171.567	0/0:161:161,0:161:5688:0:0:0,-48.4658,-505.325	0/0:90:90,0:90:3195:0:0:0,-27.0927,-286.249	0/0:149:145,4:145:5179:4:129:0,-35.6505,-452.23	0/0:76:76,0:76:2693:0:0:0,-22.8783,-239.884	0/1:52:19,33:19:680:33:1162:-62.8481,0,-45.3513	0/1:211:112,99:112:3924:99:3512:-170.91,0,-288.153	0/0:191:191,0:191:6779:0:0:0,-57.4967,-601.09	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.5478	0/1:227:100,127:100:3550:127:4498:-232.995,0,-249.737	0/1:126:48,77:48:1685:77:2738:-145.483,0,-112.556	0/0:143:140,3:140:4971:3:108:0,-35.5494,-435.244	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.41563	0/1:20:8,12:8:288:12:428:-22.7876,0,-20.0171	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.93584	0/1:6:1,5:1:32:5:176:-10.7053,0,-1.37259	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.0477	0/1:141:74,67:74:2612:67:2374:-116.192,0,-191.663	0/1:123:59,64:59:2112:64:2288:-114.522,0,-151.357	0/0:27:27,0:27:972:0:0:0,-8.12781,-85.6164	0/1:5:2,3:2:72:3:99:-5.76011,0,-5.27179	0/1:132:56,76:56:1975:76:2705:-141.723,0,-136.484	0/1:21:12,9:12:414:9:315:-15.1698,0,-30.9741	0/0:198:198,0:198:6999:0:0:0,-59.6039,-619.681	0/0:42:42,0:42:1487:0:0:0,-12.6433,-132.553	0/0:43:43,0:43:1478:0:0:0,-12.9443,-131.929	0/1:120:61,59:61:2171:59:2100:-104.252,0,-159.051	0/0:90:90,0:90:3212:0:0:0,-27.0927,-283.733	0/0:166:166,0:166:5878:0:0:0,-49.971,-524.433	0/0:72:69,1:69:2450:1:36:0,-17.9858,-215.337	0/0:102:100,2:100:3571:2:72:0,-25.6727,-314.035	0/1:117:51,66:51:1783:66:2292:-119.795,0,-125.046	0/1:9:7,2:7:252:2:72:-2.32307,0,-19.9391	0/0:118:118,0:118:4219:0:0:0,-35.5215,-372.562	0/0:103:103,0:103:3629:0:0:0,-31.0061,-325.858	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.2902	0/0:151:151,0:151:5345:0:0:0,-45.4555,-475.387	0/0:50:50,0:50:1764:0:0:0,-15.0515,-157.984	0/1:7:3,4:3:93:4:144:-7.69261,0,-6.55236	0/1:22:10,12:10:360:12:428:-22.1856,0,-26.0393	0/1:117:57,60:57:2009:60:2118:-107.465,0,-143.489	0/1:89:36,53:36:1280:53:1857:-98.7707,0,-87.7763	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.57877	0/0:121:121,0:121:4305:0:0:0,-36.4246,-385.835	0/1:141:82,59:82:2905:59:2098:-97.0369,0,-216.176	0/0:55:52,3:52:1851:3:104:0,-9.20378,-157.668	0/1:87:37,50:37:1323:50:1746:-91.4508,0,-92.507	0/1:170:82,88:82:2928:88:3117:-157.561,0,-210.404	0/1:201:60,141:60:2135:141:4979:-273.83,0,-130.484	0/1:24:9,15:9:320:15:518:-27.9477,0,-21.1337	0/0:62:62,0:62:2215:0:0:0,-18.6639,-196.085	0/1:36:18,18:18:644:18:644:-31.0093,0,-47.0666	0/1:20:6,14:6:207:14:504:-27.1944,0,-12.8531	0/1:138:67,71:67:2386:71:2519:-132.799,0,-169.164	0/1:96:46,50:46:1599:50:1777:-93.552,0,-113.118	0/1:231:85,146:85:3013:146:5186:-274.253,0,-198.364	0/0:145:145,0:145:5155:0:0:0,-43.6493,-460.525	0/1:99:53,46:53:1879:46:1636:-84.3914,0,-135.41	0/1:85:40,45:40:1436:45:1591:-84.5458,0,-100.966	1/1:2:0,2:0:0:2:72:-5.19878,-0.60206,0	0/0:78:77,1:77:2748:1:36:0,-20.8317,-242.007	0/0:114:114,0:114:4072:0:0:0,-34.3174,-360.727	0/0:112:111,1:111:3935:1:20:0,-31.9261,-349.736	0/0:42:42,0:42:1468:0:0:0,-12.6433,-131.584	0/0:56:56,0:56:1991:0:0:0,-16.8577,-177.988	0/0:37:37,0:37:1294:0:0:0,-11.1381,-116.191	0/1:84:35,49:35:1256:49:1719:-90.4227,0,-87.442	0/0:22:22,0:22:792:0:0:0,-6.62266,-70.2493	0/1:66:34,32:34:1212:32:1101:-57.4349,0,-87.7076	0/0:73:73,0:73:2598:0:0:0,-21.9752,-230.098	0/0:28:28,0:28:1000:0:0:0,-8.42884,-88.6719	0/1:86:40,46:40:1432:46:1596:-82.5079,0,-101.616	0/1:69:28,41:28:990:41:1448:-76.3588,0,-68.1571	0/0:93:93,0:93:3307:0:0:0,-27.9958,-295.575	0/0:71:71,0:71:2528:0:0:0,-21.3731,-225.634
chr12	1132239	.	T	C	115634	PASS	AB=0.495773;ABP=3.52432;AC=143;AF=0.760638;AN=188;AO=5449;CIGAR=1X;DP=7140;DPB=7140;DPRA=14.0889;EPP=11835.4;EPPR=3659.77;GTI=0;LEN=1;MEANALT=1.07609;MQM=59.9719;MQMR=59.9964;NS=94;NUMALT=1;ODDS=0.595714;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=195033;QR=60344;RO=1684;RPL=0;RPP=11835.4;RPPR=3659.77;RPR=5449;RUN=1;SAF=5449;SAP=11835.4;SAR=0;SRF=1684;SRP=3659.77;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:21,22:21:748:22:792:-58.6614,0,-54.701	1/1:81:0,81:0:0:81:2902:-261.371,-24.3834,0	0/1:151:81,70:81:2912:70:2508:-180.517,0,-216.859	1/1:164:0,164:0:0:164:5875:-528.859,-49.3689,0	0/1:55:27,28:27:960:28:1004:-74.1146,0,-70.1596	0/1:50:27,23:27:972:23:824:-59.4318,0,-72.7464	1/1:120:0,119:0:0:119:4253:-382.587,-35.8226,0	0/1:112:67,45:67:2385:45:1609:-111.385,0,-181.191	1/1:119:0,118:0:0:118:4232:-380.699,-35.5215,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	0/1:74:36,38:36:1292:38:1352:-98.5987,0,-94.3075	1/1:77:0,77:0:0:77:2772:-249.72,-23.1793,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	0/1:36:20,15:20:720:15:536:-37.8196,0,-54.3756	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:55:0,55:0:0:55:1961:-176.537,-16.5567,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:144:69,75:69:2461:75:2700:-199.895,0,-178.394	1/1:115:0,115:0:0:115:4112:-370.265,-34.6185,0	1/1:107:2,105:2:72:105:3745:-330.413,-25.3735,0	1/1:42:0,42:0:0:42:1501:-135.384,-12.6433,0	1/1:118:0,118:0:0:118:4240:-381.778,-35.5215,0	0/1:80:35,45:35:1241:45:1605:-120.657,0,-87.9101	0/1:262:133,129:133:4761:129:4621:-337.183,0,-349.771	1/1:183:0,183:0:0:183:6493:-584.454,-55.0885,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:233:117,116:117:4204:116:4149:-303.453,0,-308.399	0/1:79:34,44:34:1224:44:1580:-118.651,0,-86.6269	1/1:83:0,83:0:0:83:2954:-266.092,-24.9855,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:196:89,107:89:3200:107:3836:-286.434,0,-229.22	0/1:109:58,51:58:2069:51:1820:-131.269,0,-153.667	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:106:54,52:54:1932:52:1868:-136.36,0,-142.247	0/1:37:18,19:18:648:19:674:-49.8483,0,-47.5138	1/1:136:0,136:0:0:136:4873:-438.72,-40.9401,0	1/1:63:0,63:0:0:63:2254:-203.123,-18.9649,0	1/1:50:2,48:2:72:48:1720:-148.249,-8.21478,0	0/1:91:48,43:48:1716:43:1540:-111.499,0,-127.332	1/1:98:0,98:0:0:98:3486:-313.952,-29.5009,0	1/1:174:0,174:0:0:174:6244:-562.053,-52.3792,0	1/1:83:0,83:0:0:83:2973:-267.802,-24.9855,0	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:111:41,70:41:1472:70:2512:-192.918,0,-99.3618	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:72:0,72:0:0:72:2573:-231.82,-21.6742,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:101:0,101:0:0:101:3616:-325.516,-30.404,0	1/1:44:0,44:0:0:44:1564:-141.052,-13.2453,0	1/1:13:1,12:1:36:12:417:-34.2619,-0.315115,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:39:22,17:22:792:17:604:-42.9504,0,-59.8655	0/1:112:61,51:61:2196:51:1828:-131.086,0,-164.19	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:129:1,128:1:36:128:4595:-410.115,-35.2346,0	0/1:109:44,65:44:1576:65:2317:-175.977,0,-109.319	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0	0/1:59:28,31:28:1004:31:1109:-82.3604,0,-72.9151	0/1:125:51,74:51:1828:74:2642:-200.397,0,-127.172	0/1:66:47,19:47:1692:19:669:-40.6667,0,-132.699	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:50:20,30:20:716:30:1072:-81.741,0,-49.7162	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:101:42,58:42:1508:58:2088:-157.727,0,-105.552	0/1:58:26,32:26:936:32:1148:-86.1701,0,-67.0997	0/1:78:45,33:45:1612:33:1184:-83.388,0,-121.89	1/1:96:0,95:0:0:95:3409:-306.663,-28.5979,0	0/1:90:62,28:62:2209:28:1008:-63.9437,0,-171.981	0/1:63:32,31:32:1152:31:1112:-81.4265,0,-85.0253	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:75:0,75:0:0:75:2681:-241.53,-22.5773,0	1/1:100:0,100:0:0:100:3547:-319.436,-30.103,0	1/1:210:0,209:0:0:209:7487:-673.512,-62.9153,0	1/1:98:0,98:0:0:98:3515:-316.559,-29.5009,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	1/1:84:0,84:0:0:84:3024:-272.387,-25.2865,0	0/1:149:74,75:74:2649:75:2678:-196.412,0,-193.801	1/1:46:0,46:0:0:46:1639:-147.798,-13.8474,0	0/1:74:46,28:46:1652:28:1008:-68.7601,0,-126.692	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:56:24,32:24:849:32:1144:-86.4118,0,-59.8701	0/1:60:40,20:40:1436:20:716:-46.7059,0,-111.476	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:89:0,89:0:0:89:3179:-286.333,-26.7917,0
chr12	1137133	.	A	G	38332.8	PASS	AB=0.482732;ABP=6.31012;AC=144;AF=0.765957;AN=188;AO=1796;CIGAR=1X;DP=2461;DPB=2461;DPRA=0;EPP=3638.36;EPPR=1325.83;GTI=1;LEN=1;MEANALT=1.01064;MQM=59.9143;MQMR=59.9473;NS=94;NUMALT=1;ODDS=0.033874;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63979;QR=23679;RO=664;RPL=31;RPP=3638.36;RPPR=1325.83;RPR=1765;RUN=1;SAF=1796;SAP=3902.97;SAR=0;SRF=664;SRP=1444.87;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:10,9:10:356:9:324:-23.7863,0,-26.6617	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:30:22,8:22:780:8:284:-16.8725,0,-61.4921	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.439	0/1:28:17,11:17:608:11:392:-27.1912,0,-46.6232	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:22:6,16:6:212:16:572:-45.1908,0,-12.8021	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	0/1:20:8,12:8:284:12:424:-32.4758,0,-19.8828	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	0/1:45:24,21:24:860:21:745:-53.8215,0,-64.1755	1/1:26:0,26:0:0:26:915:-82.6637,-7.82678,0	1/1:31:0,31:0:0:31:1116:-100.729,-9.33193,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:50:0,49:0:0:49:1748:-157.333,-14.7505,0	0/1:22:13,9:13:464:9:320:-22.5197,0,-35.4748	0/1:85:41,44:41:1468:44:1557:-114.832,0,-106.829	1/1:46:0,46:0:0:46:1641:-147.977,-13.8474,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:50:25,25:25:900:25:873:-63.833,0,-66.2613	0/1:75:41,34:41:1453:34:1212:-86.8091,0,-108.484	1/1:33:0,33:0:0:33:1175:-106.057,-9.93399,0	0/1:9:1,8:1:36:8:273:-22.1909,0,-0.889005	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:7:2,5:2:68:5:180:-14.4449,0,-4.3505	0/1:3:1,2:1:32:2:72:-5.93363,0,-2.29622	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:43:27,16:27:968:16:576:-39.2307,0,-74.4931	0/1:53:19,34:19:650:34:1216:-93.792,0,-42.8618	1/1:29:0,29:0:0:29:1044:-94.249,-8.72987,0	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:35:16,19:16:568:19:684:-51.3543,0,-40.9158	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	1/1:53:0,53:0:0:53:1900:-171.255,-15.9546,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:12:0,12:0:0:12:417:-37.8602,-3.61236,0	0/1:37:25,12:25:896:12:428:-27.7207,0,-69.8222	1/1:22:0,22:0:0:22:772:-69.799,-6.62266,0	1/1:26:0,26:0:0:26:936:-84.5591,-7.82678,0	1/1:22:0,22:0:0:22:773:-69.8895,-6.62266,0	1/1:34:0,34:0:0:34:1216:-109.69,-10.235,0	0/1:53:28,25:28:992:25:900:-65.3664,0,-73.6394	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:32:0,32:0:0:32:1133:-102.276,-9.63296,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:23:0,23:0:0:23:819:-74.03,-6.92369,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:29:17,12:17:604:12:417:-29.1303,0,-45.9607	0/1:36:18,18:18:644:18:648:-47.8148,0,-47.4535	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:54:0,54:0:0:54:1906:-171.814,-16.2556,0	0/1:39:22,17:22:788:17:612:-43.6733,0,-59.4908	1/1:34:1,33:1:36:33:1176:-102.547,-6.63675,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:39:24,15:24:860:15:524:-35.7479,0,-65.9813	0/1:41:26,15:26:928:15:540:-36.5943,0,-71.496	0/1:11:3,8:3:108:8:284:-22.592,0,-6.76384	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	0/1:31:15,16:15:521:16:572:-42.4815,0,-37.8844	0/1:11:5,6:5:171:6:216:-16.4792,0,-12.4141	0/1:55:29,26:29:1036:26:894:-64.1571,0,-76.9939	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:57:30,27:30:1076:27:960:-69.5527,0,-79.9941	1/1:49:0,49:0:0:49:1734:-156.343,-14.7505,0	0/1:45:17,28:17:608:28:995:-76.3177,0,-41.5057	0/1:22:8,14:8:284:14:504:-39.0721,0,-19.2807	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3779	1/1:30:2,28:2:72:28:995:-83.0273,-2.19418,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:35:0,35:0:0:35:1237:-111.632,-10.5361,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:30:17,13:17:612:13:464:-33.0666,0,-46.3821	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:18:8,10:8:288:10:341:-25.5992,0,-20.8489	1/1:19:0,19:0:0:19:676:-61.1646,-5.71957,0	1/1:22:1,21:1:36:21:756:-64.7689,-3.02439,0	0/1:43:25,18:25:896:18:631:-44.1712,0,-68.0161	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.138	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:20:1,19:1:36:19:655:-55.6706,-2.42233,0
chr12	1137160	.	C	A	8098.96	PASS	AB=0.489991;ABP=4.01005;AC=42;AF=0.223404;AN=188;AO=567;CIGAR=1X;DP=2334;DPB=2334;DPRA=1.1925;EPP=1234.24;EPPR=3835.66;GTI=2;LEN=1;MEANALT=1;MQM=59.9524;MQMR=59.9564;NS=94;NUMALT=1;ODDS=0.16407;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=19188;QR=62701;RO=1765;RPL=567;RPP=1234.24;RPPR=3835.66;RPR=0;RUN=1;SAF=567;SAP=1234.24;SAR=0;SRF=1765;SRP=3835.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:9,8:9:324:8:288:-21.1499,0,-24.3883	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:25:8,17:8:288:17:593:-46.169,0,-18.7417	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/1:19:7,12:7:252:12:364:-27.3329,0,-17.3094	0/1:26:11,15:11:392:15:521:-39.3895,0,-27.7933	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/1:28:16,12:16:572:12:428:-30.43,0,-43.3846	0/0:20:20,0:20:697:0:0:0,-6.0206,-63.0507	0/0:27:25,0:25:881:0:0:0,-7.52575,-79.2882	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9095	0/1:21:16,5:16:557:5:172:-9.49634,0,-44.1339	0/0:17:17,0:17:591:0:0:0,-5.11751,-53.5153	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/1:19:12,7:12:423:7:240:-16.2151,0,-32.6855	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:8:8,0:8:265:0:0:0,-2.40824,-24.1721	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:40:19,21:19:680:21:692:-50.5434,0,-49.488	0/0:26:26,0:26:915:0:0:0,-7.82678,-82.664	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/1:21:9,12:9:316:12:394:-29.4528,0,-22.4572	0/1:77:40,37:40:1428:37:1309:-94.9302,0,-105.638	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.804	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3237	0/1:46:24,22:24:856:22:704:-49.8084,0,-63.5137	0/1:68:33,35:33:1184:35:1144:-82.7773,0,-86.3983	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4317	0/0:9:8,1:8:288:1:21:0,-0.609324,-24.1675	0/1:5:1,4:1:36:4:129:-10.4225,0,-2.09312	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:3:2,1:2:72:1:21:-1.19686,0,-5.93363	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:36:15,21:15:523:21:708:-53.1958,0,-36.5614	0/1:53:35,18:35:1232:18:579:-36.4591,0,-95.2252	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:32:18,14:18:631:14:496:-35.3413,0,-47.4827	0/1:17:11,6:11:388:6:186:-11.9261,0,-30.1399	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.328	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/1:33:12,21:12:432:21:714:-54.6391,0,-29.2872	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1929	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1985	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:51:28,23:28:1004:23:813:-58.1366,0,-75.3233	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:29:29,0:29:1022:0:0:0,-8.72987,-92.2909	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:24:24,0:24:845:0:0:0,-7.22472,-76.364	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/1:23:11,12:11:381:12:402:-29.5755,0,-27.6969	0/1:32:17,15:17:608:15:484:-34.2335,0,-45.4191	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:52:52,0:52:1847:0:0:0,-15.6536,-166.509	0/1:39:18,21:18:639:21:690:-50.6593,0,-46.0981	0/0:31:30,1:30:1071:1:32:0,-6.13262,-93.499	0/1:10:4,6:4:144:6:197:-15.041,0,-10.3033	0/1:35:14,21:14:504:21:680:-50.9662,0,-35.1616	0/1:36:15,21:15:540:21:741:-56.1745,0,-38.0995	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/0:22:22,0:22:769:0:0:0,-6.62266,-69.5286	0/1:29:16,13:16:550:13:444:-31.555,0,-41.0935	0/1:11:6,5:6:212:5:180:-13.2407,0,-16.1135	0/1:44:23,21:23:809:21:717:-51.5982,0,-59.6549	0/1:10:8,2:8:284:2:72:-3.82642,0,-22.8931	0/1:53:26,27:26:919:27:954:-70.2206,0,-67.071	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.646	0/1:42:25,17:25:892:17:563:-38.3335,0,-67.9564	0/1:19:13,6:13:453:6:216:-14.0709,0,-35.3801	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:31:29,2:29:1018:2:72:0,-2.49521,-85.0937	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/0:14:14,0:14:483:0:0:0,-4.21442,-43.7973	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/1:25:11,14:11:381:14:481:-36.0893,0,-27.0949	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:18:9,9:9:324:9:305:-22.3595,0,-24.0873	0/0:18:18,0:18:622:0:0:0,-5.41854,-56.3016	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:41:18,23:18:635:23:800:-59.9763,0,-45.1332	0/1:19:8,11:8:280:11:358:-26.8136,0,-19.8197	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168
chr12	1140136	.	CGTTT	AGTTC,AGTTT	187830	PASS	AB=0.359593,0.63507;ABP=676.815,626.567;AC=141,41;AF=0.774725,0.225275;AN=182;AO=5095,2514;CIGAR=1X3M1X,1X4M;DP=7644;DPB=7651.8;DPRA=0,1.46533;EPP=6277.72,1280.2;EPPR=0;GTI=5;LEN=5,1;MEANALT=1.93407,2.47059;MQM=59.8711,59.9916;MQMR=0;NS=91;NUMALT=2;ODDS=1.83379;PAIRED=0,0;PAIREDR=0;PAO=22,4;PQA=710,136;PQR=136;PRO=4;QA=178696,89121;QR=0;RO=0;RPL=4466,1866;RPP=6277.72,1284.41;RPPR=0;RPR=629,648;RUN=1,1;SAF=5095,2513;SAP=11066.7,5453.41;SAR=0,1;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:28:0,6,22:0:0:6,22:210,784:-81.3458,-64.2613,-62.4551,-17.4357,0,-10.8131	1/1:86:0,86,0:0:0:86,0:2993,0:-269.604,-25.8886,0,-269.604,-25.8886,-269.604	1/2:111:0,44,65:0:0:44,65:1555,2316:-314.944,-188.857,-175.612,-126.166,0,-106.599	1/1:154:0,152,2:0:0:152,2:5333,72:-479.753,-45.7566,0,-473.878,-39.5219,-473.276	1/2:87:0,12,75:0:0:12,75:418,2661:-251.149,-217.158,-213.546,-34.3399,0,-11.7626	1/2:60:0,17,43:0:0:17,43:604,1532:-174.447,-125.229,-120.111,-49.5733,0,-36.629	1/1:104:0,101,0:0:0:101,0:3544,0:-318.901,-30.404,0,-318.901,-30.404,-318.901	1/2:157:0,39,117:0:0:39,117:1365,4088:-443.632,-332.577,-320.837,-111.093,0,-75.8726	1/1:75:0,75,0:0:0:75,0:2613,0:-235.421,-22.5773,0,-235.421,-22.5773,-235.421	1/1:110:0,109,1:0:0:109,1:3819,36:-343.553,-32.8123,0,-340.616,-29.515,-340.315	1/1:59:0,58,0:0:0:58,0:2034,0:-183.07,-17.4597,0,-183.07,-17.4597,-183.07	1/2:76:0,43,33:0:0:43,33:1481,1180:-216.858,-96.5741,-83.6298,-120.636,0,-110.702	1/1:61:0,60,1:0:0:60,1:2120,36:-190.709,-18.0618,0,-187.771,-14.7646,-187.47	1/1:90:0,89,0:0:0:89,0:3116,0:-280.339,-26.7917,0,-280.339,-26.7917,-280.339	1/1:65:0,65,0:0:0:65,0:2314,0:-208.52,-19.567,0,-208.52,-19.567,-208.52	1/2:45:0,26,19:0:0:26,19:912,684:-130.383,-56.1708,-48.344,-74.5681,0,-68.8486	1/1:86:0,84,1:0:0:84,1:2961,36:-265.966,-25.2865,0,-263.028,-22.3192,-262.727	1/1:62:0,62,0:0:0:62,0:2182,0:-196.635,-18.6639,0,-196.635,-18.6639,-196.635	1/1:35:0,35,0:0:0:35,0:1236,0:-111.544,-10.5361,0,-111.544,-10.5361,-111.544	1/2:177:0,87,90:0:0:87,90:3017,3196:-505.992,-260.77,-234.58,-245.573,0,-218.48	1/1:128:0,128,0:0:0:128,0:4481,0:-403.088,-38.5318,0,-403.088,-38.5318,-403.088	1/1:47:0,47,0:0:0:47,0:1669,0:-149.719,-14.1484,0,-149.719,-14.1484,-149.719	1/1:31:0,31,0:0:0:31,0:1085,0:-97.9587,-9.33193,0,-97.9587,-9.33193,-97.9587	1/1:96:0,95,0:0:0:95,0:3309,0:-297.711,-28.5979,0,-297.711,-28.5979,-297.711	1/2:114:0,18,96:0:0:18,96:604,3404:-326.595,-277.679,-272.26,-49.2553,0,-20.3564	1/2:266:0,106,160:0:0:106,160:3717,5704:-767.379,-464.908,-432.999,-302.416,0,-254.251	1/1:176:0,175,1:0:0:175,1:6143,36:-552.628,-52.6803,0,-549.69,-49.7411,-549.389	1/1:35:0,35,0:0:0:35,0:1242,0:-112.085,-10.5361,0,-112.085,-10.5361,-112.085	1/2:195:0,74,120:0:0:74,120:2627,4257:-560.902,-346.853,-324.577,-214.069,0,-177.945	1/2:174:0,55,119:0:0:55,119:1924,4179:-497,-340.472,-323.916,-156.878,0,-121.056	1/1:59:0,56,2:0:0:56,2:1926,72:-173.294,-16.8577,0,-167.418,-10.9029,-166.816	1/2:4:0,3,1:0:0:3,1:96,36:-11.001,-3.29724,-2.39415,-8.05359,0,-7.75256	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:8:0,8,0:0:0:8,0:280,0:-25.5392,-2.40824,0,-25.5392,-2.40824,-25.5392	1/2:225:0,93,129:0:0:93,129:3274,4582:-639.969,-373.438,-345.442,-266.605,0,-227.773	1/2:121:0,28,93:0:0:28,93:990,3304:-350.217,-269.585,-261.156,-80.9853,0,-52.9895	1/1:68:0,68,0:0:0:68,0:2384,0:-214.818,-20.47,0,-214.818,-20.47,-214.818	.:.:.:.:.:.:.:.	1/2:162:0,72,90:0:0:72,90:2512,3181:-463.727,-259.423,-237.748,-204.655,0,-177.562	1/2:28:0,10,17:0:0:10,17:351,604:-77.7774,-49.2135,-46.2032,-28.5574,0,-23.4399	1/1:34:0,34,0:0:0:34,0:1185,0:-106.614,-10.235,0,-106.614,-10.235,-106.614	1/1:56:0,56,0:0:0:56,0:1995,0:-179.825,-16.8577,0,-179.825,-16.8577,-179.825	1/1:67:0,67,0:0:0:67,0:2351,0:-211.849,-20.169,0,-211.849,-20.169,-211.849	1/2:79:0,9,70:0:0:9,70:305,2500:-228.909,-204.181,-201.472,-25.069,0,-3.99695	1/1:76:0,75,1:0:0:75,1:2656,36:-238.501,-22.5773,0,-235.563,-19.28,-235.262	1/1:86:0,85,0:0:0:85,0:2974,0:-267.506,-25.5876,0,-267.506,-25.5876,-267.506	1/1:82:0,81,0:0:0:81,0:2815,0:-253.288,-24.3834,0,-253.288,-24.3834,-253.288	1/1:96:0,96,0:0:0:96,0:3395,0:-305.768,-28.8989,0,-305.768,-28.8989,-305.768	1/2:140:0,37,103:0:0:37,103:1305,3624:-401.625,-295.365,-284.227,-106.612,0,-75.6064	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:70:0,70,0:0:0:70,0:2467,0:-222.285,-21.0721,0,-222.285,-21.0721,-222.285	1/1:48:0,48,0:0:0:48,0:1695,0:-152.837,-14.4494,0,-152.837,-14.4494,-152.837	1/1:8:0,8,0:0:0:8,0:283,0:-25.8122,-2.40824,0,-25.8122,-2.40824,-25.8122	1/1:88:0,88,0:0:0:88,0:3056,0:-274.913,-26.4906,0,-274.913,-26.4906,-274.913	1/1:19:0,19,0:0:0:19,0:668,0:-60.2537,-5.71957,0,-60.2537,-5.71957,-60.2537	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/2:18:0,4,14:0:0:4,14:142,504:-53.0528,-41.4837,-40.2796,-11.9251,0,-7.71067	1/2:72:0,30,42:0:0:30,42:1013,1488:-203.6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chr12	1140202	.	C	T	72283.4	PASS	AB=0.326433;ABP=875.149;AC=141;AF=0.75;AN=188;AO=3752;CIGAR=1X;DP=6081;DPB=6081;DPRA=5.98715;EPP=8124.34;EPPR=5053.86;GTI=10;LEN=1;MEANALT=1.03261;MQM=43.0544;MQMR=23.3809;NS=94;NUMALT=1;ODDS=0.529828;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=133512;QR=83122;RO=2326;RPL=3752;RPP=8150.37;RPPR=5053.86;RPR=0;RUN=1;SAF=3;SAP=8124.34;SAR=3749;SRF=0;SRP=5053.86;SRR=2326;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:26,7:26:924:7:237:-11.4506,0,-39.0478	1/1:34:0,34:0:0:34:1197:-106.082,-10.235,0	0/1:183:110,73:110:3929:73:2590:-174.208,0,-156.557	1/1:103:0,103:0:0:103:3658:-320.474,-31.0061,0	0/0:49:46,3:46:1656:3:108:0,-4.84933,-78.0559	0/1:23:16,7:16:576:7:252:-15.6018,0,-24.7018	1/1:69:2,67:2:68:67:2392:-204.785,-16.4698,0	0/1:104:78,26:78:2796:26:936:-51.9204,0,-119.072	1/1:52:0,52:0:0:52:1856:-164.93,-15.6536,0	1/1:85:0,85:0:0:85:3031:-265.836,-25.5876,0	1/1:42:0,42:0:0:42:1500:-130.686,-12.6433,0	0/1:89:46,43:46:1644:43:1521:-108.356,0,-60.7702	1/1:61:0,61:0:0:61:2192:-194.483,-18.3628,0	1/1:42:0,42:0:0:42:1512:-133.459,-12.6433,0	1/1:52:1,51:1:36:51:1832:-155.978,-12.0579,0	0/1:47:34,13:34:1224:13:464:-27.2486,0,-52.6397	1/1:35:0,35:0:0:35:1248:-111.104,-10.5361,0	1/1:15:0,15:0:0:15:532:-45.9413,-4.51545,0	1/1:33:0,33:0:0:33:1180:-105.067,-9.93399,0	0/1:116:78,38:78:2808:38:1349:-83.271,0,-125.757	1/1:62:1,61:1:36:61:2180:-190.491,-16.5773,0	1/1:23:0,23:0:0:23:818:-71.5374,-6.92369,0	1/1:44:0,44:0:0:44:1531:-134.731,-13.2453,0	1/1:11:0,11:0:0:11:396:-34.8211,-3.31133,0	0/1:83:73,10:73:2597:10:360:-6.75499,0,-116.071	0/1:186:139,46:139:4947:46:1622:-86.7719,0,-250.427	1/1:176:0,175:0:0:175:6205:-547.134,-52.6803,0	1/1:20:0,20:0:0:20:720:-63.1322,-6.0206,0	0/1:210:148,62:148:5304:62:2208:-128.38,0,-265.625	0/1:63:40,23:40:1432:23:820:-53.9417,0,-60.076	1/1:31:0,31:0:0:31:1116:-98.4426,-9.33193,0	0/1:4:3,1:3:108:1:36:-2.332,0,-4.63832	0/1:6:5,1:5:180:1:36:-1.72994,0,-7.79211	0/1:5:2,3:2:72:3:104:-8.0856,0,-2.45936	0/0:12:12,0:12:432:0:0:0,-3.61236,-24.1169	1/1:17:0,17:0:0:17:593:-52.4029,-5.11751,0	0/1:154:81,73:81:2883:73:2612:-181.337,0,-132.423	0/1:78:69,9:69:2464:9:316:-4.85499,0,-109.621	1/1:38:0,38:0:0:38:1341:-118.592,-11.4391,0	1/1:2:0,2:0:0:2:72:-6.68688,-0.60206,0	0/1:91:67,24:67:2404:24:856:-48.5352,0,-99.9636	0/1:24:14,10:14:504:10:360:-24.9653,0,-19.2749	1/1:64:0,64:0:0:64:2245:-198.251,-19.2659,0	1/1:41:1,40:1:36:40:1436:-122.01,-8.74655,0	1/1:59:0,59:0:0:59:2108:-181.154,-17.7608,0	0/1:115:84,31:84:3020:31:1093:-61.2988,0,-151.905	1/1:43:0,43:0:0:43:1540:-136.053,-12.9443,0	1/1:115:0,115:0:0:115:4052:-354.744,-34.6185,0	1/1:51:1,50:1:36:50:1754:-151.224,-11.7569,0	1/1:93:0,93:0:0:93:3332:-292.307,-27.9958,0	0/1:121:86,35:86:3088:35:1240:-72.9145,0,-153.648	0/0:10:10,0:10:356:0:0:0,-3.0103,-20.7103	1/1:60:0,60:0:0:60:2121:-187.815,-18.0618,0	1/1:19:0,19:0:0:19:680:-60.2407,-5.71957,0	1/1:6:0,6:0:0:6:212:-19.1779,-1.80618,0	1/1:69:0,69:0:0:69:2472:-217.674,-20.7711,0	1/1:22:0,22:0:0:22:784:-68.7925,-6.62266,0	0/1:11:6,5:6:216:5:180:-12.8853,0,-10.0843	0/1:8:7,1:7:252:1:36:-1.11277,0,-13.38	0/1:38:30,8:30:1068:8:288:-14.1082,0,-46.42	0/1:61:36,25:36:1292:25:877:-58.7597,0,-56.6907	1/1:1:0,1:0:0:1:36:-3.52101,-0.30103,0	1/1:143:0,143:0:0:143:5079:-446.295,-43.0473,0	0/1:154:99,55:99:3503:55:1942:-123.158,0,-157.272	1/1:39:5,34:5:180:34:1220:-97.7171,-2.14188,0	0/1:97:60,37:60:2156:37:1328:-87.5343,0,-95.7219	0/1:217:159,58:159:5678:58:2037:-113.087,0,-260.016	0/1:130:106,24:106:3781:24:864:-37.1139,0,-181.066	0/1:25:6,19:6:216:19:684:-52.6773,0,-3.95047	1/1:37:2,35:2:72:35:1229:-105.499,-7.1736,0	0/1:45:30,15:30:1080:15:535:-33.6849,0,-51.5812	0/1:26:12,14:12:417:14:496:-35.9175,0,-16.8503	0/1:114:78,36:78:2769:36:1296:-81.0093,0,-112.006	0/1:87:52,35:52:1860:35:1237:-83.429,0,-71.6184	0/1:110:68,42:68:2425:42:1496:-99.5942,0,-101.315	1/1:126:0,126:0:0:126:4490:-393.522,-37.9298,0	0/1:104:85,19:85:3040:19:676:-28.0495,0,-135.816	0/1:63:33,30:33:1180:30:1049:-73.9106,0,-45.9103	0/1:9:8,1:8:288:1:36:-0.839245,0,-12.5228	1/1:75:1,74:1:36:74:2637:-229.244,-20.4907,0	1/1:88:0,88:0:0:88:3114:-273.117,-26.4906,0	1/1:114:0,114:0:0:114:4088:-356.498,-34.3174,0	1/1:31:0,31:0:0:31:1112:-97.6711,-9.33193,0	1/1:49:0,49:0:0:49:1737:-152.291,-14.7505,0	1/1:31:0,31:0:0:31:1097:-96.6235,-9.33193,0	0/1:101:56,45:56:1989:45:1612:-111.261,0,-83.3086	1/1:14:0,14:0:0:14:504:-44.9808,-4.21442,0	0/1:53:31,22:31:1107:22:792:-54.0993,0,-42.465	1/1:52:0,52:0:0:52:1864:-165.718,-15.6536,0	1/1:24:0,24:0:0:24:860:-74.3144,-7.22472,0	0/1:67:33,34:33:1165:34:1201:-85.8965,0,-43.1701	0/1:78:49,28:49:1756:28:1004:-63.9643,0,-76.4488	1/1:74:1,73:1:36:73:2601:-225.886,-19.9974,0	1/1:90:0,90:0:0:90:3220:-282.483,-27.0927,0
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chr12	1194343	.	C	T	36119.5	PASS	AB=0.517064;ABP=13.3111;AC=46;AF=0.247312;AN=186;AO=2107;CIGAR=1X;DP=7677;DPB=7677;DPRA=1.20611;EPP=4552.28;EPPR=11946.5;GTI=2;LEN=1;MEANALT=1.06667;MQM=59.8927;MQMR=59.993;NS=93;NUMALT=1;ODDS=3.34317;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75404;QR=198400;RO=5564;RPL=3;RPP=4552.28;RPPR=11937.9;RPR=2104;RUN=1;SAF=2107;SAP=4578.3;SAR=0;SRF=5563;SRP=12076.4;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:34,12:34:1220:12:428:-25.0114,0,-96.2594	0/0:41:41,0:41:1447:0:0:0,-12.3422,-130.525	0/1:130:59,71:59:2083:71:2540:-189.716,0,-148.606	0/0:163:163,0:163:5814:0:0:0,-49.0679,-523.375	0/1:71:35,35:35:1260:35:1252:-91.6877,0,-92.4218	0/1:41:13,28:13:464:28:989:-76.9806,0,-29.7553	0/0:94:94,0:94:3355:0:0:0,-28.2968,-302.167	0/1:163:81,82:81:2896:82:2928:-214.678,0,-211.808	0/0:61:61,0:61:2164:0:0:0,-18.3628,-195.025	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:99:42,57:42:1508:57:2006:-151,0,-106.213	0/0:60:60,0:60:2148:0:0:0,-18.0618,-193.587	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.926	0/1:47:17,30:17:612:30:1061:-81.651,0,-41.265	0/0:30:30,0:30:1068:0:0:0,-9.0309,-96.4321	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:263:181,82:181:6411:82:2940:-185.649,0,-497.91	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.497	0/0:108:108,0:108:3859:0:0:0,-32.5112,-347.505	0/0:79:79,0:79:2800:0:0:0,-23.7814,-252.223	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:112:58,54:58:2072:54:1926:-139.895,0,-153.035	0/1:238:112,125:112:3974:125:4480:-331.744,0,-286.226	0/0:192:190,0:190:6770:0:0:0,-57.1957,-609.016	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/1:232:91,141:91:3237:141:5033:-383.145,0,-221.712	0/1:130:67,63:67:2375:63:2260:-164.529,0,-174.874	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.393	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:13:4,9:4:144:9:309:-24.2273,0,-9.40023	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:199:98,101:98:3507:101:3616:-265.727,0,-255.935	0/1:151:72,79:72:2542:79:2831:-209.556,0,-183.576	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:143:93,50:93:3297:50:1800:-119.235,0,-253.903	0/1:41:25,16:25:896:16:576:-39.8328,0,-68.6181	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.203	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.759	0/0:51:51,0:51:1794:0:0:0,-15.3525,-161.741	0/1:153:61,92:61:2164:92:3307:-251.79,0,-148.967	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.186	0/0:195:195,0:195:6921:0:0:0,-58.7008,-622.96	0/0:99:99,0:99:3525:0:0:0,-29.802,-317.459	0/0:74:74,0:74:2633:0:0:0,-22.2762,-237.216	0/1:37:16,21:16:572:21:743:-56.0552,0,-40.6753	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:118:118,0:118:4240:0:0:0,-35.5215,-381.778	0/0:60:60,0:60:2120:0:0:0,-18.0618,-191.067	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.3607	0/0:112:112,0:112:3973:0:0:0,-33.7154,-357.76	0/0:48:48,0:48:1692:0:0:0,-14.4494,-152.563	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:16:9,7:9:324:7:248:-17.8477,0,-24.6894	0/1:59:26,33:26:923:33:1163:-87.2005,0,-65.626	0/1:101:57,44:57:2039:44:1576:-111.728,0,-153.377	.:.:.:.:.:.:.:.	0/0:182:181,0:181:6463:0:0:0,-54.4864,-581.395	0/1:149:87,62:87:3112:62:2228:-155.923,0,-235.454	0/0:59:59,0:59:2103:0:0:0,-17.7608,-189.539	0/1:76:31,44:31:1112:44:1584:-119.901,0,-77.4543	0/1:125:64,61:64:2275:61:2192:-159.917,0,-167.383	0/1:124:36,88:36:1283:88:3164:-247.656,0,-78.4449	0/1:21:9,12:9:320:12:432:-32.8996,0,-22.8207	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/1:67:26,41:26:911:41:1459:-111.434,0,-62.136	0/1:25:9,16:9:324:16:576:-44.6492,0,-21.9801	0/1:153:60,93:60:2133:93:3340:-254.751,0,-146.179	0/1:97:59,38:59:2107:38:1352:-92.7723,0,-160.699	0/1:93:35,58:35:1256:58:2084:-159.834,0,-85.3495	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/1:110:45,65:45:1603:65:2322:-176.096,0,-111.446	0/1:101:46,55:46:1639:55:1975:-147.607,0,-117.394	0/1:11:5,6:5:172:6:216:-16.2861,0,-12.5066	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.462	0/0:156:156,0:156:5563:0:0:0,-46.9607,-500.796	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/1:145:71,74:71:2552:74:2648:-194.917,0,-186.281	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:76:45,31:45:1611:31:1116:-77.8734,0,-122.401	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:93:38,55:38:1364:55:1976:-150.119,0,-95.0649	0/1:89:29,60:29:1032:60:2152:-167.156,0,-66.4018	0/0:137:137,0:137:4892:0:0:0,-41.2411,-440.434	0/0:101:101,0:101:3608:0:0:0,-30.404,-324.927
chr12	1194378	.	T	C	33251.6	PASS	AB=0.510797;ABP=7.08969;AC=46;AF=0.247312;AN=186;AO=2062;CIGAR=1X;DP=7632;DPB=7632;DPRA=1.26171;EPP=4471.9;EPPR=12098.1;GTI=2;LEN=1;MEANALT=1;MQM=59.9331;MQMR=59.9961;NS=93;NUMALT=1;ODDS=0.85918;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71802;QR=197829;RO=5570;RPL=2061;RPP=4471.9;RPPR=12098.1;RPR=1;RUN=1;SAF=2062;SAP=4480.59;SAR=0;SRF=5570;SRP=12098.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:36,12:36:1276:12:419:-23.5877,0,-100.694	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.453	0/1:126:60,66:60:2121:66:2286:-168.068,0,-153.227	0/0:161:161,0:161:5722:0:0:0,-48.4658,-515.098	0/1:67:34,33:34:1212:33:1163:-84.7934,0,-89.2173	0/1:41:13,28:13:441:28:959:-74.2746,0,-27.671	0/0:94:94,0:94:3338:0:0:0,-28.2968,-300.638	0/1:158:78,80:78:2753:80:2793:-204.039,0,-200.447	0/0:61:61,0:61:2159:0:0:0,-18.3628,-194.577	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/0:43:43,0:43:1531:0:0:0,-12.9443,-138.082	0/1:96:40,56:40:1440:56:1949:-146.777,0,-100.999	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/0:46:46,0:46:1624:0:0:0,-13.8474,-146.446	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.995	0/1:46:17,29:17:608:29:1016:-77.9016,0,-41.2046	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/0:30:30,0:30:1055:0:0:0,-9.0309,-95.26	0/1:260:182,78:182:6454:78:2672:-162.449,0,-502.68	0/0:87:87,0:87:3074:0:0:0,-26.1896,-276.887	0/0:109:109,0:109:3894:0:0:0,-32.8123,-350.653	0/0:80:80,0:80:2847:0:0:0,-24.0824,-256.468	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:115:61,54:61:2126:54:1871:-134.017,0,-156.985	0/1:241:114,127:114:4065:127:4419:-325.337,0,-293.488	0/0:193:191,2:191:6770:2:68:0,-51.6411,-602.918	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:224:89,135:89:3173:135:4769:-361.928,0,-218.363	0/1:129:66,63:66:2344:63:2193:-158.8,0,-172.384	0/0:86:86,0:86:3061:0:0:0,-25.8886,-275.718	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:12:4,8:4:144:8:280:-21.9269,0,-9.70126	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:192:97,95:97:3451:95:3239:-233.936,0,-253.006	0/1:150:75,75:75:2642:75:2626:-191.417,0,-192.87	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:145:95,50:95:3395:50:1743:-113.501,0,-262.115	0/1:42:26,16:26:908:16:559:-37.9943,0,-69.3892	0/0:82:82,0:82:2909:0:0:0,-24.6845,-262.045	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:50:50,0:50:1767:0:0:0,-15.0515,-159.313	0/1:154:63,91:63:2256:91:3169:-239.076,0,-156.944	0/0:87:87,0:87:3084:0:0:0,-26.1896,-277.788	0/0:191:191,0:191:6776:0:0:0,-57.4967,-609.918	0/0:100:100,0:100:3553:0:0:0,-30.103,-319.979	0/0:75:74,1:74:2633:1:36:0,-18.979,-233.618	0/1:38:17,21:17:608:21:724:-54.0376,0,-43.6129	0/1:10:6,4:6:208:4:135:-9.47221,0,-16.0488	0/0:119:119,0:119:4240:0:0:0,-35.8226,-381.695	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:113:113,0:113:4000:0:0:0,-34.0164,-360.194	0/0:46:46,0:46:1604:0:0:0,-13.8474,-144.644	0/1:8:5,3:5:180:3:90:-5.98974,0,-14.1438	0/1:17:10,7:10:347:7:252:-17.9114,0,-26.4461	0/1:57:27,30:27:941:30:1072:-79.62,0,-67.8427	0/1:99:57,42:57:2027:42:1458:-101.711,0,-152.9	.:.:.:.:.:.:.:.	0/0:180:180,0:180:6418:0:0:0,-54.1854,-577.71	0/1:147:86,61:86:3067:61:2144:-148.969,0,-232.008	0/0:60:60,0:60:2143:0:0:0,-18.0618,-193.137	0/1:78:33,45:33:1184:45:1587:-119.626,0,-83.388	0/1:126:65,61:65:2273:61:2156:-156.375,0,-166.9	0/1:122:36,86:36:1283:86:3041:-237.195,0,-79.047	0/1:19:7,12:7:252:12:400:-30.5997,0,-17.3094	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/1:64:26,38:26:910:38:1320:-99.8308,0,-62.9481	0/1:25:9,16:9:320:16:548:-42.1156,0,-21.6166	0/1:152:60,92:60:2103:92:3192:-241.746,0,-143.78	0/1:98:60,38:60:2104:38:1335:-90.94,0,-160.127	0/1:92:35,57:35:1252:57:1968:-149.696,0,-85.2903	0/0:118:118,0:118:4223:0:0:0,-35.5215,-380.25	0/1:107:44,63:44:1538:63:2172:-163.532,0,-106.5	0/1:100:46,54:46:1631:54:1908:-141.894,0,-116.975	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/0:159:159,0:159:5688:0:0:0,-47.8638,-512.039	0/0:53:53,0:53:1875:0:0:0,-15.9546,-169.028	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:34:34,0:34:1201:0:0:0,-10.235,-108.394	0/1:142:69,73:69:2448:73:2515:-183.855,0,-177.827	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/1:75:44,31:44:1563:31:1050:-72.2244,0,-118.384	0/0:75:75,0:75:2671:0:0:0,-22.5772,-240.636	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:97:40,57:40:1410:57:1985:-149.72,0,-97.9958	0/1:86:28,58:28:984:58:2021:-156.273,0,-62.9848	0/0:145:145,0:145:5153:0:0:0,-43.6493,-463.911	0/0:102:102,0:102:3618:0:0:0,-30.7051,-325.827
chr12	1194435	.	GTTTT	TTTTA,TTTTT	88054.7	PASS	AB=0.433406,0.566352;ABP=162.368,161.213;AC=145,43;AF=0.771277,0.228723;AN=188;AO=5836,2351;CIGAR=1X3M1X,1X4M;DP=8195;DPB=8195;DPRA=88.1075,1.21906;EPP=12675.7,5082.12;EPPR=5.18177;GTI=7;LEN=5,1;MEANALT=1.55914,2;MQM=24.9032,24.9685;MQMR=17;NS=94;NUMALT=2;ODDS=0.547052;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=206428,58616;QR=36;RO=1;RPL=0,3;RPP=12675.7,5082.12;RPPR=5.18177;RPR=5836,2348;RUN=1,1;SAF=0,0;SAP=12675.7,5108.14;SAR=5836,2351;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,14,11:0:0:14,11:493,292:-48.8984,-20.229,-16.0146,-28.916,0,-25.6047	1/1:120:0,120,0:0:0:120,0:4245,0:-285.146,-36.1236,0,-285.146,-36.1236,-285.146	1/2:135:0,56,79:0:0:56,79:1975,2126:-262.395,-146.427,-129.569,-116.222,0,-92.4406	1/1:135:0,135,0:0:0:135,0:4754,0:-278.839,-40.6391,0,-278.839,-40.6391,-278.839	1/2:99:0,36,63:0:0:36,63:1255,1694:-190.594,-116.692,-105.855,-74.1558,0,-55.191	1/2:26:0,4,22:0:0:4,22:142,590:-49.0744,-40.7642,-39.5601,-8.57029,0,-1.94763	1/1:50:0,50,0:0:0:50,0:1752,0:-102.898,-15.0515,0,-102.898,-15.0515,-102.898	1/2:179:0,77,102:0:0:77,102:2725,2739:-348.196,-188.634,-165.455,-159.815,0,-129.11	1/1:47:0,47,0:0:0:47,0:1667,0:-111.734,-14.1484,0,-111.734,-14.1484,-111.734	1/1:102:0,102,0:0:0:102,0:3569,0:-209.528,-30.7051,0,-209.528,-30.7051,-209.528	1/1:54:0,54,0:0:0:54,0:1923,0:-111.357,-16.2556,0,-111.357,-16.2556,-111.357	1/2:77:0,35,42:0:0:35,42:1242,1134:-150.789,-78.2941,-67.7581,-72.7473,0,-60.1041	1/1:59:0,59,0:0:0:59,0:2106,0:-140.485,-17.7608,0,-140.485,-17.7608,-140.485	1/1:77:0,77,0:0:0:77,0:2738,0:-183.17,-23.1793,0,-183.17,-23.1793,-183.17	1/1:64:0,64,0:0:0:64,0:2269,0:-130.728,-19.2659,0,-130.728,-19.2659,-130.728	1/2:53:0,22,31:0:0:22,31:787,827:-103.63,-57.133,-50.5103,-46.7522,0,-37.4203	1/1:57:0,56,0:0:0:56,0:1987,0:-132.727,-16.8577,0,-132.727,-16.8577,-132.727	1/1:46:0,46,0:0:0:46,0:1626,0:-108.753,-13.8474,0,-108.753,-13.8474,-108.753	1/1:25:0,25,0:0:0:25,0:879,0:-59.491,-7.52575,0,-59.491,-7.52575,-59.491	1/2:152:0,62,90:0:0:62,90:2214,2089:-245.713,-136.822,-118.158,-109.109,0,-82.0167	1/1:89:0,89,0:0:0:89,0:3152,0:-211.566,-26.7917,0,-211.566,-26.7917,-211.566	1/1:133:0,133,0:0:0:133,0:4655,0:-270.824,-40.037,0,-270.824,-40.037,-270.824	1/1:44:0,44,0:0:0:44,0:1566,0:-91.0321,-13.2453,0,-91.0321,-13.2453,-91.0321	1/1:90:0,90,0:0:0:90,0:3159,0:-213.398,-27.0927,0,-213.398,-27.0927,-213.398	1/2:42:0,23,19:0:0:23,19:817,513:-82.9563,-35.5502,-28.6265,-47.6563,0,-41.9367	1/2:347:0,135,212:0:0:135,212:4773,4898:-555.778,-320.133,-279.494,-235.863,0,-172.044	1/1:168:0,168,0:0:0:168,0:5920,0:-398.726,-50.573,0,-398.726,-50.573,-398.726	1/1:40:0,40,0:0:0:40,0:1434,0:-96.296,-12.0412,0,-96.296,-12.0412,-96.296	1/2:196:0,79,117:0:0:79,117:2805,2705:-314.947,-176.926,-153.144,-138.238,0,-103.018	1/2:160:0,73,87:0:0:73,87:2582,2333:-311.212,-160.667,-138.692,-150.796,0,-124.607	1/1:67:0,67,0:0:0:67,0:2372,0:-138.452,-20.169,0,-138.452,-20.169,-138.452	1/1:10:0,9,1:0:0:9,1:321,27:-21.4423,-2.70927,0,-19.5863,-0.610897,-19.2853	1/2:7:0,5,2:0:0:5,2:174,54:-14.291,-3.95681,-2.45166,-10.5806,0,-9.97858	2/2:1:0,0,1:0:0:0,1:0,27:-2.3994,-2.3994,-2.3994,-0.30103,-0.30103,0	1/2:3:0,1,2:0:0:1,2:36,52:-5.86139,-3.76705,-3.46602,-2.34757,0,-1.74551	1/1:2:0,2,0:0:0:2,0:72,0:-5.03234,-0.60206,0,-5.03234,-0.60206,-5.03234	1/2:224:0,108,116:0:0:108,116:3844,2677:-363.682,-175.124,-142.612,-188.773,0,-153.853	1/2:261:0,87,174:0:0:87,174:3068,4670:-500.89,-321.273,-295.084,-179.871,0,-127.492	1/1:59:0,59,0:0:0:59,0:2102,0:-141.307,-17.7608,0,-141.307,-17.7608,-141.307	1/2:2:0,1,1:0:0:1,1:36,27:-4.19354,-2.09837,-1.79734,-2.34757,0,-2.04654	1/2:125:1,71,53:1:36:71,53:2511,1422:-242.899,-96.5334,-76.3831,-145.522,0,-130.791	1/2:33:0,22,11:0:0:22,11:777,297:-66.0238,-20.6827,-14.06,-45.5885,0,-42.2772	1/1:133:0,133,0:0:0:133,0:4722,0:-315.793,-40.037,0,-315.793,-40.037,-315.793	1/1:83:0,83,0:0:0:83,0:2930,0:-170.61,-24.9855,0,-170.61,-24.9855,-170.61	1/1:77:0,77,0:0:0:77,0:2739,0:-158.9,-23.1793,0,-158.9,-23.1793,-158.9	1/2:57:0,29,28:0:0:29,28:1024,646:-92.9904,-42.353,-33.6232,-50.8512,0,-42.4223	1/1:128:0,128,0:0:0:128,0:4520,0:-303.757,-38.5318,0,-303.757,-38.5318,-303.757	1/1:150:0,148,2:0:0:148,2:5222,46:-304.982,-44.5524,0,-301.985,-41.3544,-301.383	1/1:108:0,108,0:0:0:108,0:3805,0:-222.895,-32.5112,0,-222.895,-32.5112,-222.895	1/1:157:0,157,0:0:0:157,0:5513,0:-324.675,-47.2617,0,-324.675,-47.2617,-324.675	1/2:77:0,40,37:0:0:40,37:1392,855:-125.469,-56.0244,-43.9832,-69.6577,0,-58.5196	1/2:6:0,4,2:0:0:4,2:139,46:-10.1883,-3.19805,-1.99393,-7.19931,0,-6.59725	1/1:134:0,133,1:0:0:133,1:4669,27:-314.131,-40.037,0,-312.273,-37.9386,-311.972	1/1:49:0,49,0:0:0:49,0:1721,0:-100.268,-14.7505,0,-100.268,-14.7505,-100.268	1/1:7:0,7,0:0:0:7,0:237,0:-16.7162,-2.10721,0,-16.7162,-2.10721,-16.7162	1/1:120:0,119,0:0:0:119,0:4224,0:-282.328,-35.8226,0,-282.328,-35.8226,-282.328	1/1:26:0,26,0:0:0:26,0:919,0:-53.5425,-7.82678,0,-53.5425,-7.82678,-53.5425	1/1:1:0,1,0:0:0:1,0:36,0:-2.27887,-0.30103,0,-2.27887,-0.30103,-2.27887	1/2:20:0,13,7:0:0:13,7:466,159:-33.2706,-10.5109,-6.59751,-22.9676,0,-20.8604	1/2:37:0,17,20:0:0:17,20:607,540:-72.7703,-37.4086,-32.2911,-35.6149,0,-29.5943	1/2:113:0,55,58:0:0:55,58:1939,1342:-185.049,-87.8636,-71.3069,-97.4013,0,-79.9416	1/1:8:0,8,0:0:0:8,0:276,0:-16.6637,-2.40824,0,-16.6637,-2.40824,-16.6637	1/1:235:0,235,0:0:0:235,0:8347,0:-482.835,-70.7421,0,-482.835,-70.7421,-482.835	1/2:261:0,99,162:0:0:99,162:3494,3742:-420.009,-244.561,-214.759,-175.667,0,-126.9	1/1:54:0,51,2:0:0:51,2:1801,54:-120.955,-15.3525,0,-117.239,-11.7077,-116.637	1/2:89:0,56,33:0:0:56,33:1910,767:-149.704,-50.389,-33.5313,-99.5278,0,-89.5938	1/2:183:0,89,94:0:0:89,94:3151,2165:-298.841,-141.458,-114.667,-157.598,0,-129.301	1/2:103:0,19,84:0:0:19,84:657,1946:-160.418,-127.457,-121.738,-33.1823,0,-7.89574	1/2:14:0,8,6:0:0:8,6:288,162:-28.0665,-11.3905,-8.9823,-16.9265,0,-15.1204	1/1:24:0,24,0:0:0:24,0:850,0:-56.7305,-7.22472,0,-56.7305,-7.22472,-56.7305	1/2:90:0,35,55:0:0:35,55:1249,1270:-144.107,-83.097,-72.5609,-61.2266,0,-44.67	1/1:16:0,15,1:0:0:15,1:526,23:-30.6711,-4.51545,0,-29.1738,-2.81642,-28.8727	1/2:36:0,14,22:0:0:14,22:491,587:-69.3116,-40.4939,-36.2794,-29.07,0,-22.4473	1/2:68:0,34,34:0:0:34,34:1198,904:-132.28,-62.1657,-51.9307,-70.3638,0,-60.1288	1/2:164:0,64,100:0:0:64,100:2262,2674:-316.755,-184.067,-164.801,-132.942,0,-102.839	1/1:113:0,113,0:0:0:113,0:4011,0:-233.223,-34.0164,0,-233.223,-34.0164,-233.223	1/2:153:0,85,68:0:0:85,68:3024,1836:-301.843,-126.613,-101.026,-175.479,0,-155.009	1/2:149:0,50,99:0:0:50,99:1774,2670:-288.037,-184.394,-169.343,-103.899,0,-74.0969	1/2:7:0,3,4:0:0:3,4:105,108:-13.8907,-7.67367,-6.77058,-6.47029,0,-5.26617	1/1:87:0,87,0:0:0:87,0:3069,0:-205.858,-26.1896,0,-205.858,-26.1896,-205.858	1/1:86:0,85,0:0:0:85,0:3006,0:-201.422,-25.5876,0,-201.422,-25.5876,-201.422	1/1:135:0,135,0:0:0:135,0:4785,0:-282.575,-40.6391,0,-282.575,-40.6391,-282.575	1/1:106:0,106,0:0:0:106,0:3762,0:-217.526,-31.9092,0,-217.526,-31.9092,-217.526	1/1:59:0,59,0:0:0:59,0:2097,0:-120.636,-17.7608,0,-120.636,-17.7608,-120.636	1/1:100:0,100,0:0:0:100,0:3581,0:-205.964,-30.103,0,-205.964,-30.103,-205.964	1/2:157:0,82,75:0:0:82,75:2913,1729:-256.641,-112.987,-88.3023,-143.868,0,-121.291	1/1:51:0,50,0:0:0:50,0:1782,0:-118.777,-15.0515,0,-118.777,-15.0515,-118.777	1/2:91:0,46,45:0:0:46,45:1631,1206:-178.507,-83.0592,-69.2119,-95.6982,0,-82.1518	1/1:65:0,63,0:0:0:63,0:2245,0:-149.493,-18.9649,0,-149.493,-18.9649,-149.493	1/1:26:0,26,0:0:0:26,0:933,0:-62.9606,-7.82678,0,-62.9606,-7.82678,-62.9606	1/2:63:0,25,38:0:0:25,38:889,1035:-123.81,-71.9067,-64.381,-52.159,0,-40.7199	1/2:53:0,15,38:0:0:15,38:536,884:-84.3774,-58.1439,-53.6285,-26.4541,0,-15.015	1/1:92:0,92,0:0:0:92,0:3258,0:-191.063,-27.6948,0,-191.063,-27.6948,-191.063	1/1:89:0,89,0:0:0:89,0:3179,0:-183.941,-26.7917,0,-183.941,-26.7917,-183.941
chr12	1208107	.	A	C	334294	PASS	AB=0.495889;ABP=4.24209;AC=142;AF=0.755319;AN=188;AO=12585;CIGAR=1X;DP=16839;DPB=16839;DPRA=0;EPP=27331;EPPR=9223.08;GTI=0;LEN=1;MEANALT=1.04255;MQM=59.3448;MQMR=59.9847;NS=94;NUMALT=1;ODDS=10.2908;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=443690;QR=150839;RO=4250;RPL=6813;RPP=189.993;RPPR=5.51388;RPR=5772;RUN=1;SAF=6813;SAP=189.993;SAR=5772;SRF=2161;SRP=5.65899;SRR=2089;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:127:74,53:74:2648:53:1869:-130.174,0,-200.336	1/1:150:0,150:0:0:150:5328:-479.383,-45.1545,0	0/1:302:166,136:166:5912:136:4829:-343.432,0,-441.279	1/1:428:0,428:0:0:428:15001:-1348.65,-128.841,0	0/1:122:59,63:59:2102:63:2213:-162.694,0,-152.722	0/1:53:29,24:29:1023:24:852:-61.0458,0,-76.4271	1/1:147:0,147:0:0:147:5136:-461.801,-44.2514,0	0/1:264:130,134:130:4566:134:4753:-348.348,0,-331.629	1/1:132:0,132:0:0:132:4614:-415.324,-39.736,0	1/1:141:0,141:0:0:141:4926:-443.307,-42.4452,0	1/1:156:0,156:0:0:156:5475:-492.757,-46.9607,0	0/1:234:124,110:124:4389:110:3866:-277.65,0,-324.746	1/1:146:1,145:1:36:145:5098:-455.297,-40.3521,0	1/1:117:0,117:0:0:117:4078:-367.169,-35.2205,0	1/1:100:0,100:0:0:100:3532:-317.809,-30.103,0	0/1:155:76,79:76:2694:79:2823:-207.55,0,-196.045	1/1:90:1,89:1:36:89:3124:-277.753,-23.4944,0	1/1:58:0,58:0:0:58:2059:-185.546,-17.4597,0	1/1:92:0,92:0:0:92:3264:-293.34,-27.6948,0	0/1:324:164,160:164:5832:160:5642:-410.202,0,-427.461	1/1:206:0,206:0:0:206:7237:-650.939,-62.0122,0	1/1:153:0,153:0:0:153:5413:-487.056,-46.0576,0	1/1:310:2,308:2:72:308:10811:-965.291,-86.4826,0	1/1:161:0,161:0:0:161:5656:-509.074,-48.4658,0	0/1:123:57,66:57:2052:66:2322:-172.167,0,-147.925	0/1:522:246,276:246:8775:276:9773:-722.22,0,-632.601	1/1:424:0,424:0:0:424:15047:-1352.87,-127.637,0	1/1:70:0,70:0:0:70:2466:-222.068,-21.0721,0	0/1:604:292,312:292:10413:312:11012:-808.555,0,-755.272	0/1:214:123,91:123:4366:91:3233:-226.695,0,-328.696	1/1:197:3,194:3:108:194:6796:-601.099,-49.2277,0	0/1:17:12,5:12:428:5:180:-11.4117,0,-33.7413	0/1:30:12,18:12:428:18:636:-48.5279,0,-29.8279	0/1:57:43,14:43:1536:14:500:-28.1579,0,-121.374	0/1:16:9,7:9:320:7:252:-17.8872,0,-24.3259	1/1:22:0,22:0:0:22:779:-70.4321,-6.62266,0	0/1:384:205,178:205:7233:178:6278:-449.251,0,-535.379	0/1:164:78,86:78:2761:86:3047:-225.067,0,-199.363	1/1:116:0,116:0:0:116:4059:-365.429,-34.9195,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:265:118,147:118:4213:147:5145:-382.69,0,-299.571	0/1:71:43,28:43:1516:28:981:-67.2279,0,-115.36	1/1:337:3,334:3:108:334:11848:-1055.89,-91.3724,0	1/1:201:0,201:0:0:201:7060:-635.433,-60.507,0	1/1:110:0,110:0:0:110:3878:-349.051,-33.1133,0	0/1:198:99,99:99:3515:99:3473:-253.002,0,-256.955	1/1:132:1,131:1:36:131:4634:-413.585,-36.1377,0	1/1:387:2,385:2:72:385:13574:-1214.32,-109.662,0	1/1:147:0,147:0:0:147:5173:-464.356,-44.2514,0	1/1:287:0,287:0:0:287:10152:-913.289,-86.3956,0	0/1:221:102,119:102:3590:119:4218:-313.173,0,-256.781	0/1:19:13,6:13:468:6:212:-13.6995,0,-36.7401	1/1:184:0,183:0:0:183:6512:-585.716,-55.0885,0	1/1:143:1,142:1:36:142:4991:-445.664,-39.449,0	1/1:14:0,14:0:0:14:481:-43.6151,-4.21442,0	1/1:272:1,271:1:36:271:9559:-856.403,-78.2819,0	1/1:100:0,100:0:0:100:3546:-319.068,-30.103,0	0/1:42:16,26:16:572:26:926:-71.0093,0,-39.1702	0/1:36:18,18:18:644:18:631:-46.2335,0,-47.4535	0/1:107:55,52:55:1949:52:1837:-133.299,0,-143.474	0/1:176:87,89:87:3067:89:3172:-232.72,0,-223.275	1/1:22:0,22:0:0:22:784:-70.8723,-6.62266,0	1/1:341:0,341:0:0:341:12027:-1081.49,-102.651,0	0/1:339:186,153:186:6611:153:5417:-385.072,0,-492.994	0/1:106:14,92:14:500:92:3245:-260.335,0,-13.427	0/1:158:89,69:89:3163:69:2388:-167.591,0,-237.333	0/1:476:218,257:218:7676:257:9053:-670.81,0,-547.533	0/1:185:106,79:106:3783:79:2824:-198.617,0,-284.979	0/1:110:56,54:56:1971:54:1883:-136.607,0,-144.551	1/1:100:0,100:0:0:100:3550:-319.66,-30.103,0	0/1:81:38,43:38:1352:43:1527:-113.336,0,-97.5969	0/1:33:12,21:12:428:21:741:-57.0753,0,-28.9248	0/1:164:73,91:73:2575:91:3175:-236.261,0,-182.629	0/1:171:87,84:87:3100:84:2947:-213.9,0,-227.75	0/1:320:158,162:158:5617:162:5725:-418.256,0,-409.325	1/1:309:1,308:1:32:308:10850:-971.847,-89.819,0	0/1:243:128,115:128:4524:115:4075:-293.73,0,-334.178	0/1:244:115,129:115:4088:129:4532:-334.435,0,-294.652	0/1:29:11,18:11:378:18:631:-48.3854,0,-25.611	1/1:209:1,208:1:27:208:7296:-653.648,-60.2155,0	1/1:247:1,246:1:36:246:8707:-779.841,-70.7561,0	1/1:464:1,462:1:32:462:16330:-1465.55,-136.517,0	1/1:118:0,118:0:0:118:4173:-375.655,-35.5215,0	1/1:109:0,109:0:0:109:3840:-345.726,-32.8123,0	1/1:86:0,86:0:0:86:3011:-271.213,-25.8886,0	0/1:283:146,137:146:5171:137:4801:-346.916,0,-380.34	1/1:97:0,97:0:0:97:3442:-309.875,-29.1999,0	0/1:147:76,71:76:2685:71:2470:-178.132,0,-197.64	1/1:158:0,158:0:0:158:5544:-498.929,-47.5627,0	1/1:84:0,84:0:0:84:2978:-268.237,-25.2865,0	0/1:216:101,115:101:3612:115:4034:-298.207,0,-260.264	0/1:237:163,74:163:5782:74:2618:-164.489,0,-449.156	1/1:129:0,129:0:0:129:4563:-410.682,-38.8329,0	1/1:243:2,241:2:72:241:8455:-753.79,-66.3136,0
chr12	1208114	.	AT	GC,AC	448461	PASS	AB=0.487861,0.509375;ABP=13.6599,9.36186;AC=142,46;AF=0.755319,0.244681;AN=188;AO=12286,4255;CIGAR=2X,1M1X;DP=16582;DPB=16588.5;DPRA=0,1.46361;EPP=26681.7,9225.26;EPPR=11.6962;GTI=0;LEN=2,1;MEANALT=1.96809,2.41379;MQM=59.3437,59.9793;MQMR=60;NS=94;NUMALT=2;ODDS=7.29106;PAIRED=0,0;PAIREDR=0;PAO=13,0;PQA=460,0;PQR=0;PRO=0;QA=431992,151208;QR=144;RO=4;RPL=6368,2181;RPP=38.8009,8.85312;RPPR=5.18177;RPR=5918,2074;RUN=1,1;SAF=6368,2179;SAP=38.8009,8.42444;SAR=5918,2076;SRF=3;SRP=5.18177;SRR=1;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:128:0,48,79:0:0:48,79:1661,2827:-365.434,-230.527,-216.078,-134.897,0,-111.116	1/1:137:0,137,0:0:0:137,0:4813,0:-433.191,-41.2411,0,-433.191,-41.2411,-433.191	1/2:287:0,124,162:0:0:124,162:4364,5794:-827.455,-472.524,-435.197,-355.004,0,-306.237	1/1:431:0,429,0:0:0:429,0:15034,0:-1351.84,-129.142,0,-1351.84,-129.142,-1351.84	1/2:119:0,61,58:0:0:61,58:2152,2066:-343.967,-168.751,-150.388,-175.571,0,-158.111	1/2:48:0,18,30:0:0:18,30:646,1052:-138.654,-85.9568,-80.5383,-53.0528,0,-44.0219	1/1:151:0,151,0:0:0:151,0:5287,0:-475.363,-45.4555,0,-475.363,-45.4555,-475.363	1/2:262:0,130,132:0:0:130,132:4582,4645:-751.405,-378.464,-339.33,-373.293,0,-333.557	1/1:120:0,120,0:0:0:120,0:4229,0:-380.728,-36.1236,0,-380.728,-36.1236,-380.728	1/1:140:0,140,0:0:0:140,0:4898,0:-440.791,-42.1442,0,-440.791,-42.1442,-440.791	1/1:159:0,158,1:0:0:158,1:5529,36:-497.223,-47.5627,0,-494.285,-44.2655,-493.984	1/2:227:0,104,122:0:0:104,122:3643,4325:-648.82,-352.449,-321.142,-296.471,0,-259.746	1/1:135:0,135,0:0:0:135,0:4703,0:-423.384,-40.6391,0,-423.384,-40.6391,-423.384	1/1:116:0,116,0:0:0:116,0:4035,0:-363.209,-34.9195,0,-363.209,-34.9195,-363.209	1/1:101:0,101,0:0:0:101,0:3583,0:-322.446,-30.404,0,-322.446,-30.404,-322.446	1/2:157:0,80,77:0:0:80,77:2810,2722:-450.664,-222.042,-197.96,-228.974,0,-205.794	1/1:86:1,85,0:1:36:85,0:3010,0:-267.497,-22.2903,0,-267.798,-25.5876,-270.735	1/1:57:0,57,0:0:0:57,0:2010,0:-181.137,-17.1587,0,-181.137,-17.1587,-181.137	1/1:88:0,88,0:0:0:88,0:3124,0:-280.663,-26.4906,0,-280.663,-26.4906,-280.663	1/2:325:0,158,167:0:0:158,167:5605,5950:-941.74,-485.333,-437.771,-456.762,0,-406.49	1/1:193:0,193,0:0:0:193,0:6751,0:-606.866,-58.0988,0,-606.866,-58.0988,-606.866	1/1:154:0,154,0:0:0:154,0:5468,0:-491.94,-46.3586,0,-491.94,-46.3586,-491.94	1/1:307:0,305,2:0:0:305,2:10766,72:-967.361,-91.8142,0,-961.486,-85.5795,-960.884	1/1:156:0,156,0:0:0:156,0:5531,0:-497.826,-46.9607,0,-497.826,-46.9607,-497.826	1/2:120:1,65,53:1:36:65,53:2304,1881:-337.668,-150.315,-133.686,-184.712,0,-171.695	1/2:525:0,277,248:0:0:277,248:9726,8792:-1507.95,-716.616,-633.231,-791.682,0,-717.027	1/1:394:0,393,0:0:0:393,0:13842,0:-1244.8,-118.305,0,-1244.8,-118.305,-1244.8	1/1:71:0,71,0:0:0:71,0:2492,0:-224.437,-21.3731,0,-224.437,-21.3731,-224.437	1/2:601:0,306,293:0:0:306,293:10782,10404:-1725.2,-847.851,-755.736,-877.474,0,-789.272	1/2:213:0,89,123:0:0:89,123:3143,4415:-616.112,-360.235,-333.444,-255.974,0,-218.947	1/1:197:0,194,3:0:0:194,3:6810,108:-612.302,-58.3998,0,-603.489,-49.2277,-602.586	1/2:17:0,5,12:0:0:5,12:180,432:-50.2734,-35.6088,-34.1037,-15.0241,0,-11.4117	1/2:29:0,17,12:0:0:17,12:603,432:-84.7265,-35.6088,-30.4913,-49.4753,0,-45.8629	1/2:55:0,13,42:0:0:13,42:455,1492:-158.931,-121.931,-118.018,-37.3502,0,-24.7069	1/2:17:0,7,10:0:0:7,10:234,356:-48.2155,-29.3709,-27.2637,-19.1868,0,-16.1765	1/1:23:0,23,0:0:0:23,0:823,0:-74.393,-6.92369,0,-74.393,-6.92369,-74.393	1/2:389:1,182,204:1:36:182,204:6339,7260:-1103.71,-588.79,-536.94,-512.316,0,-453.843	1/2:166:0,85,81:0:0:85,81:2983,2888:-478.176,-235.451,-209.864,-242.757,0,-218.374	1/1:107:0,106,0:0:0:106,0:3756,0:-337.848,-31.9092,0,-337.848,-31.9092,-337.848	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/2:255:0,130,124:0:0:130,124:4596,4432:-735.297,-361.465,-322.331,-373.937,0,-336.609	1/2:67:0,26,41:0:0:26,41:915,1418:-190.058,-115.569,-107.742,-74.8383,0,-62.496	1/1:321:0,320,1:0:0:320,1:11239,36:-1010.91,-96.3296,0,-1007.97,-93.0324,-1007.67	1/1:202:0,201,0:0:0:201,0:7081,0:-636.962,-60.507,0,-636.962,-60.507,-636.962	1/1:110:0,110,0:0:0:110,0:3886,0:-349.586,-33.1133,0,-349.586,-33.1133,-349.586	1/2:202:1,100,100:1:36:100,100:3495,3543:-569.584,-285.731,-258.566,-281.262,0,-254.096	1/1:126:0,126,0:0:0:126,0:4455,0:-401.078,-37.9298,0,-401.078,-37.9298,-401.078	1/1:383:0,381,2:0:0:381,2:13330,72:-1198.02,-114.692,0,-1192.15,-108.458,-1191.55	1/1:146:0,145,0:0:0:145,0:5126,0:-461.16,-43.6494,0,-461.16,-43.6494,-461.16	1/1:288:0,288,0:0:0:288,0:10158,0:-913.406,-86.6966,0,-913.406,-86.6966,-913.406	1/2:224:0,118,105:0:0:118,105:4136,3708:-638.405,-301.955,-266.434,-336.442,0,-304.834	1/2:19:0,6,13:0:0:6,13:216,468:-56.1637,-38.5463,-36.7401,-17.9772,0,-14.0638	1/1:179:0,179,0:0:0:179,0:6371,0:-573.395,-53.8844,0,-573.395,-53.8844,-573.395	1/1:145:0,144,1:0:0:144,1:5099,36:-458.583,-43.3483,0,-455.646,-40.0511,-455.345	1/1:13:0,13,0:0:0:13,0:457,0:-41.464,-3.91339,0,-41.464,-3.91339,-41.464	1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chr12	1208131	.	ATCCT	TTCCT	123150	PASS	AB=0.481633;ABP=15.2149;AC=142;AF=0.755319;AN=188;AO=5857;CIGAR=1X4M;DP=8040;DPB=8040;DPRA=0;EPP=12496.5;EPPR=4604.56;GTI=0;LEN=1;MEANALT=1.31915;MQM=59.5332;MQMR=59.9879;NS=94;NUMALT=1;ODDS=1.40957;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208681;QR=75865;RO=2147;RPL=5830;RPP=12487.9;RPPR=4604.56;RPR=27;RUN=1;SAF=1;SAP=12712.6;SAR=5856;SRF=0;SRP=4665.16;SRR=2147;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:51,14:51:1802:14:492:-24.6861,0,-142.534	1/1:81:0,81:0:0:81:2901:-261.291,-24.3834,0	0/1:156:90,66:90:3174:66:2368:-166.385,0,-238.926	1/1:164:0,163:0:0:163:5821:-523.222,-49.0679,0	0/1:38:18,18:18:635:18:648:-47.4508,0,-46.2818	0/1:7:6,1:6:209:1:36:-1.49107,0,-17.0434	1/1:54:0,54:0:0:54:1906:-171.537,-16.2556,0	0/1:134:64,70:64:2272:70:2470:-182.175,0,-164.375	1/1:47:0,47:0:0:47:1688:-152.151,-14.1484,0	1/1:53:0,53:0:0:53:1904:-171.544,-15.9546,0	1/1:85:0,85:0:0:85:3037:-273.468,-25.5876,0	0/1:128:70,58:70:2472:58:2072:-148.21,0,-184.203	1/1:74:0,73:0:0:73:2624:-236.014,-21.9752,0	1/1:73:0,73:0:0:73:2608:-234.847,-21.9752,0	1/1:54:0,53:0:0:53:1889:-169.969,-15.9546,0	0/1:97:54,43:54:1886:43:1540:-109.655,0,-140.814	1/1:43:0,43:0:0:43:1536:-138.524,-12.9443,0	1/1:28:0,28:0:0:28:989:-89.322,-8.42884,0	1/1:58:0,58:0:0:58:2064:-186.001,-17.4597,0	0/1:145:73,72:73:2603:72:2584:-189.152,0,-190.87	1/1:26:0,26:0:0:26:925:-83.5535,-7.82678,0	1/1:78:0,78:0:0:78:2788:-250.946,-23.4803,0	1/1:150:1,148:1:36:148:5249:-468.905,-41.615,0	1/1:64:0,64:0:0:64:2277:-205.163,-19.2659,0	0/1:70:33,37:33:1172:37:1313:-97.3508,0,-84.7154	0/1:274:119,154:119:4192:154:5489:-411.568,0,-294.924	1/1:159:0,156:0:0:156:5543:-498.591,-46.9607,0	1/1:32:0,32:0:0:32:1125:-101.47,-9.63296,0	0/1:251:130,119:130:4614:119:4257:-307.846,0,-340.111	0/1:126:74,52:74:2609:52:1860:-129.607,0,-197.13	1/1:73:2,71:2:67:71:2540:-222.216,-15.6123,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:12:5,7:5:180:7:252:-19.4073,0,-12.9397	0/1:53:43,10:43:1490:10:348:-15.6987,0,-118.437	0/1:13:7,6:7:247:6:216:-15.8737,0,-18.6595	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:181:91,90:91:3213:90:3205:-234.093,0,-234.908	0/1:76:36,40:36:1276:40:1425:-105.667,0,-92.2649	1/1:60:0,60:0:0:60:2141:-192.73,-18.0618,0	0/1:2:1,1:1:35:1:36:-2.99621,0,-2.89657	0/1:88:49,33:49:1741:33:1161:-79.7504,0,-131.934	0/1:39:27,12:27:950:12:432:-27.481,0,-74.0728	1/1:153:0,153:0:0:153:5419:-487.631,-46.0576,0	1/1:133:0,133:0:0:133:4737:-426.486,-40.037,0	1/1:50:0,49:0:0:49:1740:-156.517,-14.7505,0	0/1:52:30,22:30:1059:22:769:-53.8715,0,-79.9669	1/1:89:0,89:0:0:89:3143:-283.069,-26.7917,0	1/1:162:0,162:0:0:162:5776:-519.93,-48.7669,0	1/1:71:0,71:0:0:71:2548:-229.559,-21.3731,0	1/1:132:0,132:0:0:132:4706:-423.495,-39.736,0	0/1:111:43,67:43:1507:67:2385:-181.319,0,-102.448	0/1:6:1,5:1:36:5:180:-14.7387,0,-1.79209	1/1:117:0,116:0:0:116:4144:-372.869,-34.9195,0	1/1:45:0,45:0:0:45:1612:-145.363,-13.5464,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:113:0,113:0:0:113:3991:-359.269,-34.0164,0	1/1:41:0,41:0:0:41:1460:-131.696,-12.3422,0	0/1:29:11,17:11:394:17:608:-46.2601,0,-27.0131	0/1:21:16,5:16:563:5:180:-10.2304,0,-44.6774	0/1:34:17,17:17:596:17:597:-43.7644,0,-43.7319	0/1:102:46,56:46:1644:56:1996:-149.075,0,-117.544	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:134:0,134:0:0:134:4778:-430.026,-40.338,0	0/1:158:68,89:68:2435:89:3192:-239.708,0,-171.785	0/1:62:12,50:12:431:50:1796:-143.201,0,-20.4668	0/1:65:38,27:38:1335:27:964:-67.5075,0,-100.882	0/1:318:147,170:147:5189:170:6020:-446.015,0,-371.37	0/1:107:59,48:59:2083:48:1716:-122.47,0,-155.527	0/1:67:36,31:36:1263:31:1097:-78.8573,0,-93.8023	1/1:52:0,52:0:0:52:1849:-166.68,-15.6536,0	0/1:41:17,24:17:604:24:856:-65.0189,0,-42.3483	0/1:16:7,9:7:245:9:320:-24.3235,0,-17.574	0/1:69:34,35:34:1202:35:1256:-92.5452,0,-87.7139	0/1:74:41,33:41:1444:33:1184:-84.5227,0,-107.978	0/1:152:89,63:89:3103:63:2262:-157.715,0,-233.742	1/1:128:0,127:0:0:127:4530:-407.47,-38.2308,0	0/1:124:64,59:64:2274:59:2112:-152.938,0,-167.535	0/1:91:37,54:37:1319:54:1913:-145.006,0,-91.6185	0/1:21:10,11:10:349:11:388:-28.9357,0,-25.4241	1/1:81:1,80:1:30:80:2822:-251.065,-21.3839,0	1/1:102:0,102:0:0:102:3619:-325.788,-30.7051,0	1/1:250:0,246:0:0:246:8763:-788.161,-74.0534,0	1/1:62:0,62:0:0:62:2220:-200.052,-18.6639,0	1/1:57:0,57:0:0:57:2036:-183.507,-17.1587,0	1/1:44:0,44:0:0:44:1578:-142.301,-13.2453,0	0/1:141:72,68:72:2534:68:2430:-176.437,0,-185.807	1/1:66:0,65:0:0:65:2294:-206.378,-19.567,0	0/1:81:45,36:45:1603:36:1288:-91.8402,0,-120.177	1/1:81:0,80:0:0:80:2849:-255.799,-24.0824,0	1/1:57:0,55:0:0:55:1972:-177.384,-16.5567,0	0/1:126:66,60:66:2349:60:2122:-153.298,0,-173.739	0/1:138:92,46:92:3260:46:1640:-106.34,0,-252.081	1/1:51:0,51:0:0:51:1801:-162.273,-15.3525,0	1/1:121:2,119:2:67:119:4260:-377.197,-30.0618,0
chr12	1208702	.	G	A	25437	PASS	AB=0.468731;ABP=31.2564;AC=44;AF=0.234043;AN=188;AO=1563;CIGAR=1X;DP=7296;DPB=7296;DPRA=0.993443;EPP=3371.01;EPPR=12426;GTI=1;LEN=1;MEANALT=1;MQM=59.9367;MQMR=59.9946;NS=94;NUMALT=1;ODDS=2.16917;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55585;QR=204936;RO=5733;RPL=3;RPP=3371.01;RPPR=10832.1;RPR=1560;RUN=1;SAF=1563;SAP=3397.02;SAR=0;SRF=5537;SRP=10807.8;SRR=196;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:56:31,25:31:1116:25:896:-64.0993,0,-83.894	0/0:82:82,0:82:2933:0:0:0,-24.6845,-264.203	0/1:153:43,110:43:1536:110:3932:-308.015,0,-92.4755	0/0:163:163,0:163:5836:0:0:0,-49.0679,-525.352	0/1:37:19,18:19:684:18:633:-46.157,0,-50.7522	0/1:25:14,11:14:500:11:392:-28.0943,0,-37.8104	0/0:151:151,0:151:5400:0:0:0,-45.4555,-486.131	0/1:73:30,43:30:1072:43:1501:-113.398,0,-74.8173	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:91:56,35:56:1997:35:1256:-85.9482,0,-152.608	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/0:38:38,0:38:1352:0:0:0,-11.4391,-121.98	0/0:64:64,0:64:2277:0:0:0,-19.2659,-205.191	0/1:35:21,14:21:756:14:504:-35.162,0,-57.8312	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:250:162,88:162:5767:88:3083:-202.438,0,-443.885	0/0:142:142,0:142:5104:0:0:0,-42.7463,-459.501	0/0:130:128,2:128:4600:2:72:0,-32.2972,-407.326	0/0:82:82,0:82:2910:0:0:0,-24.6845,-262.133	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/1:58:18,40:18:648:40:1428:-111.358,0,-41.1921	0/1:217:115,102:115:4112:102:3603:-259.151,0,-304.942	0/0:216:216,0:216:7745:0:0:0,-65.0225,-697.078	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:218:127,91:127:4506:91:3264:-228.246,0,-340.084	0/1:75:26,49:26:936:49:1729:-133.316,0,-61.9822	0/0:103:103,0:103:3650:0:0:0,-31.0061,-328.702	0/1:6:2,4:2:68:4:144:-11.5074,0,-4.65153	0/1:17:4,13:4:144:13:464:-36.98,0,-8.19611	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:12:2,10:2:72:10:352:-28.4058,0,-3.22436	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:193:116,77:116:4153:77:2756:-189.813,0,-315.852	0/1:92:41,51:41:1437:51:1796:-134.224,0,-101.929	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:6:4,2:4:129:2:72:-5.03054,0,-10.1215	0/1:70:28,42:28:1004:42:1508:-114.943,0,-69.6038	0/1:34:21,13:21:756:13:464:-31.8625,0,-58.1322	0/0:120:120,0:120:4236:0:0:0,-36.1236,-381.418	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:55:55,0:55:1961:0:0:0,-16.5566,-176.763	0/1:68:42,26:42:1504:26:932:-63.7288,0,-115.185	0/0:124:124,0:124:4437:0:0:0,-37.3277,-399.499	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:101:101,0:101:3616:0:0:0,-30.404,-325.646	0/0:74:74,0:74:2641:0:0:0,-22.2762,-237.935	0/1:145:76,69:76:2701:69:2449:-176.945,0,-199.684	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:125:124,1:124:4456:1:36:0,-34.0305,-397.61	0/0:58:58,0:58:2046:0:0:0,-17.4597,-184.408	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:99:99,0:99:3533:0:0:0,-29.802,-318.178	0/0:58:58,0:58:2069:0:0:0,-17.4597,-186.479	0/1:10:9,1:9:324:1:32:-0.189013,0,-26.4956	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	0/1:60:29,31:29:1044:31:1100:-81.2485,0,-76.213	0/1:89:64,25:64:2288:25:896:-54.1687,0,-179.39	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:100:100,0:100:3577:0:0:0,-30.103,-322.136	0/1:134:78,56:78:2762:56:2008:-140.655,0,-208.482	0/0:55:54,1:54:1910:1:32:0,-13.3573,-168.974	0/1:36:28,8:28:1008:8:288:-15.4303,0,-80.1993	0/1:111:60,51:60:2145:51:1812:-129.947,0,-159.901	0/1:101:27,74:27:968:74:2620:-205.641,0,-57.0333	0/1:34:25,9:25:892:9:324:-19.2708,0,-70.3647	0/0:77:77,0:77:2753:0:0:0,-23.1793,-248.01	0/1:33:25,8:25:896:8:284:-15.9694,0,-71.0264	0/1:14:6,8:6:208:8:288:-22.053,0,-14.8447	0/1:135:78,57:78:2784:57:2040:-143.233,0,-210.162	0/1:81:49,32:49:1718:32:1117:-76.452,0,-130.518	0/1:88:49,39:49:1764:39:1392:-99.0884,0,-132.553	0/0:139:139,0:139:4976:0:0:0,-41.8432,-447.989	0/1:59:35,24:35:1256:24:864:-60.3218,0,-95.5845	0/1:76:38,38:38:1356:38:1337:-97.7496,0,-99.4622	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:64:64,0:64:2285:0:0:0,-19.2659,-205.91	0/0:212:212,0:212:7570:0:0:0,-63.8184,-681.338	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.68	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/1:109:61,48:61:2184:48:1720:-122.273,0,-163.996	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:59:36,23:36:1296:23:816:-56.0009,0,-99.1832	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:69:30,39:30:1076:39:1400:-105.514,0,-76.3818	0/1:76:30,46:30:1072:46:1625:-123.659,0,-73.9142	0/0:99:99,0:99:3526:0:0:0,-29.802,-317.547	0/0:116:116,0:116:4172:0:0:0,-34.9195,-375.66
chr12	1208855	.	GCAC	ACAT,GCAT	179199	PASS	AB=0.429208,0.567511;ABP=188.708,171.89;AC=142,46;AF=0.755319,0.244681;AN=188;AO=5984,2447;CIGAR=1X2M1X,3M1X;DP=8454;DPB=8454.75;DPRA=22.9511,1.20707;EPP=12997.1,5307.92;EPPR=16.0391;GTI=4;LEN=4,1;MEANALT=1.75,2.16667;MQM=59.9166,59.9918;MQMR=60;NS=94;NUMALT=2;ODDS=0.448326;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=108,0;PQR=0;PRO=0;QA=212149,87227;QR=214;RO=6;RPL=5984,2447;RPP=12997.1,5316.6;RPPR=16.0391;RPR=0,0;RUN=1,1;SAF=0,1;SAP=12997.1,5307.92;SAR=5984,2446;SRF=0;SRP=16.0391;SRR=6;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:20:0,15,5:0:0:15,5:524,180:-57.6634,-15.0469,-10.5315,-42.9736,0,-41.4685	1/1:108:0,108,0:0:0:108,0:3835,0:-345.347,-32.5112,0,-345.347,-32.5112,-345.347	1/2:64:0,23,41:0:0:23,41:801,1472:-185.56,-120.434,-113.51,-65.4781,0,-53.1359	1/1:102:0,100,2:0:0:100,2:3535,72:-317.728,-30.103,0,-311.858,-24.2329,-311.256	1/2:59:0,23,36:0:0:23,36:809,1281:-170.607,-104.754,-97.8305,-66.2056,0,-55.3686	1/2:65:0,25,40:0:0:25,40:887,1425:-188.771,-116.504,-108.979,-72.6218,0,-60.5806	1/1:128:0,128,0:0:0:128,0:4516,0:-406.611,-38.5318,0,-406.611,-38.5318,-406.611	1/2:113:0,60,53:0:0:60,53:2117,1889:-326.714,-154.332,-136.27,-172.737,0,-156.782	1/1:114:0,113,1:0:0:113,1:3989,36:-358.843,-34.0164,0,-355.906,-31.079,-355.605	1/1:35:0,35,0:0:0:35,0:1232,0:-111.183,-10.5361,0,-111.183,-10.5361,-111.183	1/1:108:0,108,0:0:0:108,0:3842,0:-345.978,-32.5112,0,-345.978,-32.5112,-345.978	1/2:60:0,32,28:0:0:32,28:1151,1008:-176.515,-82.6075,-72.9746,-94.2672,0,-85.8384	1/1:77:0,77,0:0:0:77,0:2711,0:-244.235,-23.1793,0,-244.235,-23.1793,-244.235	1/1:87:0,87,0:0:0:87,0:3069,0:-276.397,-26.1896,0,-276.397,-26.1896,-276.397	1/1:78:0,78,0:0:0:78,0:2779,0:-250.351,-23.4803,0,-250.351,-23.4803,-250.351	1/2:65:0,37,28:0:0:37,28:1325,1008:-190.663,-82.6075,-71.4694,-108.414,0,-99.9854	1/1:104:0,104,0:0:0:104,0:3699,0:-333.113,-31.3071,0,-333.113,-31.3071,-333.113	1/1:52:0,50,1:0:0:50,1:1779,36:-160.051,-15.0515,0,-157.114,-12.0941,-156.813	1/1:51:0,51,0:0:0:51,0:1817,0:-163.811,-15.3525,0,-163.811,-15.3525,-163.811	1/2:138:0,51,87:0:0:51,87:1816,3120:-402.819,-254.837,-239.484,-148.339,0,-122.15	1/1:129:0,129,0:0:0:129,0:4569,0:-411.357,-38.8329,0,-411.357,-38.8329,-411.357	1/1:72:0,72,0:0:0:72,0:2561,0:-230.74,-21.6742,0,-230.74,-21.6742,-230.74	1/1:43:0,42,1:0:0:42,1:1497,36:-134.665,-12.6433,0,-131.727,-9.34602,-131.426	1/1:76:0,76,0:0:0:76,0:2690,0:-242.346,-22.8783,0,-242.346,-22.8783,-242.346	1/2:83:0,48,33:0:0:48,33:1709,1184:-235.955,-96.664,-82.2146,-139.377,0,-129.443	1/2:276:0,109,167:0:0:109,167:3867,5956:-800.932,-485.874,-453.062,-315.413,0,-265.141	1/1:193:0,192,0:0:0:192,0:6852,0:-616.463,-57.7978,0,-616.463,-57.7978,-616.463	1/1:66:0,66,0:0:0:66,0:2345,0:-211.309,-19.868,0,-211.309,-19.868,-211.309	1/2:213:0,70,142:0:0:70,142:2482,5081:-616.563,-414.357,-393.285,-202.26,0,-159.514	1/2:240:0,93,147:0:0:93,147:3281,5184:-689.452,-422.447,-394.452,-267.357,0,-223.106	1/1:155:0,153,2:0:0:153,2:5430,72:-488.346,-46.0576,0,-482.471,-39.8229,-481.869	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/2:17:0,4,13:0:0:4,13:135,468:-49.4823,-38.5463,-37.3421,-11.2787,0,-7.36528	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:10:0,7,3:0:0:7,3:242,108:-28.8261,-9.17208,-7.06487,-20.0096,0,-19.1065	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/2:273:0,163,110:0:0:163,110:5785,3907:-789.999,-318.707,-269.639,-471.647,0,-438.534	1/2:152:5,47,100:5:178:47,100:1646,3545:-406.709,-274.289,-274.649,-119.413,0,-103.818	1/1:90:0,90,0:0:0:90,0:3223,0:-290.292,-27.0927,0,-290.292,-27.0927,-290.292	1/1:2:0,2,0:0:0:2,0:70,0:-6.64733,-0.60206,0,-6.64733,-0.60206,-6.64733	1/2:157:0,67,89:0:0:67,89:2370,3121:-446.983,-253.96,-233.791,-193.015,0,-166.223	1/2:37:0,22,15:0:0:22,15:789,540:-108.774,-44.4211,-37.7984,-64.7126,0,-60.1972	1/1:100:0,98,0:0:0:98,0:3480,0:-313.044,-29.5009,0,-313.044,-29.5009,-313.044	1/1:119:0,119,0:0:0:119,0:4206,0:-378.652,-35.8226,0,-378.652,-35.8226,-378.652	1/1:91:1,90,0:1:36:90,0:3166,0:-281.564,-23.7955,0,-281.865,-27.0927,-284.802	1/2:58:0,24,34:0:0:24,34:844,1201:-166.859,-98.1586,-90.9339,-69.053,0,-58.818	1/1:45:0,45,0:0:0:45,0:1583,0:-142.76,-13.5464,0,-142.76,-13.5464,-142.76	1/1:86:0,84,2:0:0:84,2:2971,72:-267.263,-25.2865,0,-261.388,-19.4117,-260.786	1/1:118:0,118,0:0:0:118,0:4215,0:-379.532,-35.5215,0,-379.532,-35.5215,-379.532	1/1:129:0,128,0:0:0:128,0:4560,0:-410.2,-38.5318,0,-410.2,-38.5318,-410.2	1/2:116:0,43,72:0:0:43,72:1528,2568:-333.958,-209.445,-196.5,-124.616,0,-102.942	1/2:10:0,2,8:0:0:2,8:71,288:-29.6433,-23.8592,-23.2571,-6.14,0,-3.73176	1/1:106:0,106,0:0:0:106,0:3753,0:-337.95,-31.9092,0,-337.95,-31.9092,-337.95	1/1:22:0,22,0:0:0:22,0:779,0:-70.4328,-6.62266,0,-70.4328,-6.62266,-70.4328	1/1:17:0,17,0:0:0:17,0:604,0:-54.6906,-5.11751,0,-54.6906,-5.11751,-54.6906	1/1:96:0,96,0:0:0:96,0:3407,0:-306.823,-28.8989,0,-306.823,-28.8989,-306.823	1/1:39:0,39,0:0:0:39,0:1354,0:-122.155,-11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chr12	1209798	.	G	C	167275	PASS	AB=0.474803;ABP=24.0206;AC=140;AF=0.752688;AN=186;AO=6362;CIGAR=1X;DP=8380;DPB=8380;DPRA=36.8132;EPP=2985.44;EPPR=771.807;GTI=0;LEN=1;MEANALT=1.06593;MQM=59.9602;MQMR=59.997;NS=93;NUMALT=1;ODDS=3.72299;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227228;QR=71699;RO=2012;RPL=6342;RPP=13644.7;RPPR=4345.99;RPR=20;RUN=1;SAF=1683;SAP=3066.7;SAR=4679;SRF=581;SRP=782.776;SRR=1431;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:15,10:15:540:10:360:-25.2123,0,-41.4108	1/1:139:0,139:0:0:139:4973:-447.611,-41.8432,0	0/1:111:55,56:55:1976:56:2012:-147.939,0,-144.7	1/1:212:0,212:0:0:212:7573:-681.61,-63.8184,0	0/1:35:13,22:13:460:22:788:-60.7087,0,-31.1993	0/1:56:45,11:45:1604:11:396:-19.1251,0,-127.792	1/1:202:1,201:1:36:201:7200:-644.456,-57.2098,0	0/1:56:36,20:36:1283:20:720:-48.2649,0,-98.9149	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:82:0,82:0:0:82:2940:-264.834,-24.6845,0	1/1:121:0,121:0:0:121:4319:-388.516,-36.4246,0	0/1:83:45,38:45:1603:38:1368:-98.4344,0,-119.574	1/1:50:0,50:0:0:50:1778:-160.3,-15.0515,0	1/1:81:0,81:0:0:81:2912:-262.315,-24.3834,0	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	0/1:52:20,32:20:720:32:1143:-87.5251,0,-49.4752	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	1/1:48:0,47:0:0:47:1664:-149.685,-14.1484,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:240:133,106:133:4699:106:3783:-268.361,0,-350.768	1/1:75:0,75:0:0:75:2684:-241.792,-22.5773,0	1/1:59:0,59:0:0:59:2101:-189.358,-17.7608,0	1/1:94:1,93:1:36:93:3309:-294.43,-24.6985,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:52:34,18:34:1198:18:644:-42.637,0,-92.4704	0/1:221:123,98:123:4355:98:3476:-246.523,0,-325.597	1/1:140:0,140:0:0:140:5016:-451.582,-42.1442,0	1/1:52:0,51:0:0:51:1836:-165.161,-15.3525,0	0/1:253:141,112:141:4992:112:3934:-278.092,0,-373.269	0/1:95:39,56:39:1404:56:2010:-152.574,0,-98.0614	1/1:96:0,96:0:0:96:3406:-306.753,-28.8989,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:348:173,175:173:6157:175:6200:-453.342,0,-449.473	0/1:52:28,24:28:995:24:860:-62.0683,0,-74.2105	1/1:60:0,60:0:0:60:2137:-192.596,-18.0618,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:164:68,95:68:2401:95:3393:-256.158,0,-166.919	0/1:31:15,16:15:532:16:561:-41.4861,0,-38.8812	1/1:68:0,68:0:0:68:2440:-219.855,-20.47,0	1/1:145:0,145:0:0:145:5208:-468.857,-43.6494,0	1/1:105:0,105:0:0:105:3736:-336.443,-31.6082,0	0/1:66:32,34:32:1144:34:1205:-88.8859,0,-83.4015	1/1:93:0,93:0:0:93:3321:-299.107,-27.9958,0	1/1:115:0,115:0:0:115:4128:-371.671,-34.6185,0	1/1:139:0,139:0:0:139:4956:-446.187,-41.8432,0	1/1:135:1,134:1:36:134:4765:-425.411,-37.0408,0	0/1:153:59,93:59:2104:93:3311:-252.092,0,-143.513	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	1/1:85:0,85:0:0:85:3035:-273.371,-25.5876,0	1/1:68:0,68:0:0:68:2414:-217.516,-20.47,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:82:0,82:0:0:82:2929:-263.837,-24.6845,0	1/1:52:0,52:0:0:52:1840:-165.88,-15.6536,0	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:56:23,33:23:824:33:1173:-89.0179,0,-57.6256	0/1:198:85,113:85:3035:113:4035:-303.734,0,-213.776	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:167:0,167:0:0:167:5924:-533.27,-50.272,0	0/1:134:61,73:61:2171:73:2600:-193.911,0,-155.318	1/1:39:2,37:2:68:37:1324:-113.004,-5.28246,0	0/1:84:44,40:44:1572:40:1422:-102.991,0,-116.485	0/1:143:87,56:87:3104:56:1992:-136.507,0,-236.541	0/1:141:101,40:101:3596:40:1432:-86.7324,0,-281.403	0/1:30:7,23:7:252:23:828:-65.8132,0,-13.9981	1/1:28:0,28:0:0:28:1008:-91.033,-8.42884,0	0/1:107:57,50:57:2031:50:1791:-129.262,0,-150.852	0/1:21:9,12:9:320:12:424:-32.1748,0,-22.8207	0/1:18:9,9:9:324:9:309:-22.7222,0,-24.0873	0/1:49:25,24:25:892:24:852:-62.2499,0,-65.8492	0/1:115:66,49:66:2355:49:1754:-123.525,0,-177.59	1/1:184:0,184:0:0:184:6581:-592.338,-55.3895,0	0/1:37:21,16:21:756:16:572:-40.6753,0,-57.2291	0/1:51:27,24:27:972:24:864:-62.73,0,-72.4454	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:51:0,51:0:0:51:1825:-164.485,-15.3525,0	1/1:80:0,80:0:0:80:2876:-259.076,-24.0824,0	1/1:216:0,216:0:0:216:7724:-695.191,-65.0225,0	1/1:139:0,139:0:0:139:4976:-447.989,-41.8432,0	1/1:109:0,109:0:0:109:3908:-351.913,-32.8123,0	1/1:133:0,133:0:0:133:4760:-428.558,-40.037,0	0/1:219:111,108:111:3968:108:3856:-281.311,0,-291.386	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:72:42,30:42:1508:30:1080:-75.8391,0,-114.34	1/1:55:0,55:0:0:55:1964:-176.975,-16.5567,0	1/1:52:0,52:0:0:52:1853:-167.046,-15.6536,0	0/1:59:27,32:27:972:32:1144:-85.5087,0,-70.0371	0/1:129:94,35:94:3372:35:1253:-74.2423,0,-264.863	1/1:144:0,144:0:0:144:5140:-462.743,-43.3483,0	1/1:214:4,209:4:144:209:7480:-659.959,-51.0457,0
chr12	1219267	.	G	A	64193.3	PASS	AB=0.385943;ABP=277.925;AC=143;AF=0.760638;AN=188;AO=3116;CIGAR=1X;DP=4614;DPB=4614;DPRA=0;EPP=6769.32;EPPR=3255.88;GTI=3;LEN=1;MEANALT=1;MQM=59.656;MQMR=59.532;NS=94;NUMALT=1;ODDS=0.441867;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=111662;QR=53570;RO=1498;RPL=0;RPP=6769.32;RPPR=3255.88;RPR=3116;RUN=1;SAF=3116;SAP=6769.32;SAR=0;SRF=1498;SRP=3255.88;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:17,10:17:604:10:360:-24.6165,0,-46.5546	1/1:43:0,43:0:0:43:1540:-138.867,-12.9443,0	0/1:99:59,40:59:2116:40:1436:-99.7165,0,-160.89	1/1:74:0,74:0:0:74:2652:-238.924,-22.2762,0	0/1:32:26,6:26:936:6:216:-10.1397,0,-74.9203	0/1:33:24,9:24:856:9:320:-19.2084,0,-67.4189	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:72:49,23:49:1756:23:824:-52.8092,0,-136.262	1/1:57:0,57:0:0:57:2036:-183.473,-17.1587,0	1/1:41:0,41:0:0:41:1458:-131.508,-12.3422,0	1/1:51:0,51:0:0:51:1832:-165.15,-15.3525,0	0/1:79:20,59:20:711:59:2105:-165.822,0,-40.5343	1/1:60:0,60:0:0:60:2160:-194.657,-18.0618,0	1/1:49:0,49:0:0:49:1760:-158.662,-14.7505,0	1/1:59:0,59:0:0:59:2124:-191.398,-17.7608,0	0/1:37:10,27:10:360:27:972:-76.6552,0,-21.6015	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:37:0,37:0:0:37:1327:-119.705,-11.1381,0	1/1:38:0,38:0:0:38:1368:-123.404,-11.4391,0	0/1:80:57,23:57:2029:23:828:-50.7548,0,-158.707	1/1:72:0,72:0:0:72:2580:-232.446,-21.6742,0	0/1:15:2,13:2:72:13:464:-37.5821,0,-2.32127	1/1:24:0,24:0:0:24:849:-76.7255,-7.22472,0	1/1:39:0,39:0:0:39:1392:-125.579,-11.7402,0	0/1:60:40,20:40:1432:20:701:-45.3499,0,-110.79	0/1:139:105,34:105:3737:34:1205:-66.9089,0,-294.598	1/1:127:0,127:0:0:127:4552:-409.699,-38.2308,0	1/1:23:0,23:0:0:23:828:-74.8124,-6.92369,0	0/1:117:83,34:83:2976:34:1216:-74.5261,0,-232.841	0/1:95:74,21:74:2644:21:756:-39.7694,0,-209.579	1/1:47:0,47:0:0:47:1669:-150.451,-14.1484,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	0/1:7:4,3:4:129:3:104:-7.5956,0,-9.81263	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:11:0,11:0:0:11:388:-35.2457,-3.31133,0	0/1:128:59,69:59:2120:69:2480:-184.921,0,-152.531	0/1:61:49,12:49:1752:12:428:-20.496,0,-139.583	1/1:40:0,40:0:0:40:1440:-129.89,-12.0412,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:85:57,28:57:2044:28:1004:-64.9296,0,-158.445	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2765	1/1:58:0,58:0:0:58:2071:-186.65,-17.4597,0	1/1:35:0,35:0:0:35:1260:-113.522,-10.5361,0	1/1:49:0,49:0:0:49:1757:-158.4,-14.7505,0	0/1:56:47,9:47:1684:9:324:-12.6482,0,-134.988	1/1:53:0,53:0:0:53:1908:-171.981,-15.9546,0	1/1:45:1,44:1:32:44:1584:-139.639,-10.347,0	1/1:17:0,17:0:0:17:612:-55.413,-5.11751,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	0/1:94:66,28:66:2357:28:1000:-62.0186,0,-183.894	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:37:0,37:0:0:37:1328:-119.806,-11.1381,0	1/1:16:0,16:0:0:16:576:-52.1741,-4.81648,0	1/1:5:0,5:0:0:5:176:-16.0676,-1.50515,0	1/1:71:0,71:0:0:71:2544:-229.049,-21.3731,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:62:32,30:32:1152:30:1080:-78.8494,0,-85.3171	0/1:66:33,33:33:1176:33:1188:-87.3559,0,-86.0794	1/1:3:0,3:0:0:3:108:-10.0727,-0.90309,0	1/1:52:0,52:0:0:52:1868:-168.397,-15.6536,0	0/1:72:51,21:51:1816:21:756:-46.6931,0,-141.915	1/1:39:0,39:0:0:39:1404:-126.65,-11.7402,0	0/1:48:24,24:24:864:24:864:-63.6308,0,-63.6308	0/1:80:54,26:54:1936:26:928:-59.7543,0,-150.434	0/1:114:94,20:94:3357:20:720:-30.7976,0,-267.974	1/1:35:2,33:2:72:33:1188:-100.392,-3.69933,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	0/1:43:21,22:21:752:22:781:-57.663,0,-55.0611	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.6557	0/1:68:35,33:35:1241:33:1157:-83.9462,0,-91.268	0/1:51:25,26:25:885:26:932:-68.4752,0,-64.614	0/1:78:45,33:45:1620:33:1180:-83.0277,0,-122.547	1/1:69:0,69:0:0:69:2472:-222.729,-20.7711,0	0/1:79:58,21:58:2084:21:748:-43.852,0,-164.04	0/1:57:31,26:31:1108:26:936:-67.3831,0,-82.8689	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:50:0,50:0:0:50:1800:-162.278,-15.0515,0	1/1:41:0,41:0:0:41:1460:-131.694,-12.3422,0	1/1:46:0,46:0:0:46:1648:-148.604,-13.8474,0	1/1:55:0,55:0:0:55:1961:-176.722,-16.5567,0	1/1:74:0,74:0:0:74:2647:-238.379,-22.2762,0	1/1:39:0,39:0:0:39:1404:-126.564,-11.7402,0	0/1:80:41,39:41:1456:39:1400:-101.997,0,-107.245	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:37:19,18:19:680:18:648:-47.5138,0,-50.3911	1/1:54:0,54:0:0:54:1935:-174.412,-16.2556,0	1/1:43:0,43:0:0:43:1544:-139.239,-12.9443,0	0/1:56:11,45:11:396:45:1603:-127.702,0,-19.1204	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7392	1/1:60:1,59:1:36:59:2108:-186.36,-14.4635,0	1/1:92:0,92:0:0:92:3312:-298.252,-27.6948,0
chr12	1219293	.	AAG	TAG,TAA	219100	PASS	AB=0.555878,0.4418;ABP=96.4403,104.367;AC=144,44;AF=0.765957,0.234043;AN=188;AO=6739,1530;CIGAR=1X2M,1X1M1X;DP=8291;DPB=8291;DPRA=0,0.775191;EPP=14610.5,3308.01;EPPR=11.6962;GTI=3;LEN=1,3;MEANALT=1.7234,2.18;MQM=56.9323,59.4634;MQMR=60;NS=94;NUMALT=2;ODDS=1.81874;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=240521,53724;QR=104;RO=4;RPL=3039,1528;RPP=143.797,3308.01;RPPR=5.18177;RPR=3700,2;RUN=1,1;SAF=3042,1530;SAP=141.253,3325.36;SAR=3697,0;SRF=3;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:31:0,14,17:0:0:14,17:500,602:-90.1415,-49.3847,-45.1703,-41.1123,0,-35.9948	1/1:99:0,99,0:0:0:99,0:3548,0:-319.376,-29.802,0,-319.376,-29.802,-319.376	1/2:117:0,57,60:0:0:57,60:2021,2085:-334.366,-169.852,-152.693,-164.865,0,-146.803	1/1:192:0,192,0:0:0:192,0:6833,0:-614.048,-57.7978,0,-614.048,-57.7978,-614.048	1/2:34:0,8,26:0:0:8,26:288,917:-98.4903,-75.0136,-72.6053,-23.8346,0,-16.0078	1/2:44:0,19,25:0:0:19,25:665,867:-124.894,-70.811,-65.0915,-54.4314,0,-46.9057	1/1:103:0,103,0:0:0:103,0:3647,0:-328.014,-31.0061,0,-328.014,-31.0061,-328.014	1/2:100:0,51,49:0:0:51,49:1811,1724:-287.854,-140.357,-125.004,-147.85,0,-133.099	1/1:116:0,116,0:0:0:116,0:4160,0:-374.203,-34.9195,0,-374.203,-34.9195,-374.203	1/1:107:1,106,0:1:27:106,0:3783,0:-337.608,-29.5104,0,-337.91,-31.9092,-340.037	1/1:93:0,93,0:0:0:93,0:3327,0:-299.494,-27.9958,0,-299.494,-27.9958,-299.494	1/2:101:0,81,20:0:0:81,20:2908,712:-295.151,-58.3855,-34.0021,-237.121,0,-231.101	1/1:131:0,130,0:0:0:130,0:4646,0:-417.75,-39.1339,0,-417.75,-39.1339,-417.75	1/1:111:0,110,0:0:0:110,0:3935,0:-353.43,-33.1133,0,-353.43,-33.1133,-353.43	1/1:135:0,135,0:0:0:135,0:4845,0:-435.523,-40.6391,0,-435.523,-40.6391,-435.523	1/2:60:0,50,10:0:0:50,10:1775,352:-173.555,-29.0027,-13.9512,-144.904,0,-141.894	1/1:100:0,100,0:0:0:100,0:3588,0:-322.687,-30.103,0,-322.687,-30.103,-322.687	1/1:111:0,111,0:0:0:111,0:3947,0:-355.092,-33.4143,0,-355.092,-33.4143,-355.092	1/1:61:0,61,0:0:0:61,0:2184,0:-196.675,-18.3628,0,-196.675,-18.3628,-196.675	1/2:121:0,63,58:0:0:63,58:2237,2046:-349.079,-166.933,-147.968,-182.499,0,-165.04	1/1:150:0,149,0:0:0:149,0:5327,0:-478.602,-44.8535,0,-478.602,-44.8535,-478.602	1/1:36:0,34,2:0:0:34,2:1208,70:-108.588,-10.235,0,-102.893,-4.18975,-102.291	1/1:54:0,53,0:0:0:53,0:1904,0:-170.974,-15.9546,0,-170.974,-15.9546,-170.974	1/1:109:0,109,0:0:0:109,0:3887,0:-349.692,-32.8123,0,-349.692,-32.8123,-349.692	1/2:74:0,33,41:0:0:33,41:1172,1428:-211.897,-116.437,-106.503,-95.8109,0,-83.4686	1/2:182:0,76,106:0:0:76,106:2720,3732:-525.527,-303.911,-281.033,-221.97,0,-190.061	1/1:209:0,209,0:0:0:209,0:7468,0:-671.612,-62.9153,0,-671.612,-62.9153,-671.612	1/1:62:0,60,1:0:0:60,1:2148,34:-192.873,-18.0618,0,-190.118,-15.3166,-189.817	1/2:180:0,93,86:0:0:93,86:3323,3022:-516.534,-245.963,-217.967,-270.565,0,-244.676	1/2:138:2,63,72:2:49:63,72:2252,2526:-384.689,-201.808,-186.648,-179.746,0,-161.876	1/1:98:0,96,1:0:0:96,1:3421,36:-307.142,-28.8989,0,-304.205,-25.9613,-303.904	1/2:10:0,2,8:0:0:2,8:68,278:-28.4595,-22.9486,-22.3465,-5.85213,0,-3.44389	1/2:24:0,13,10:0:0:13,10:468,358:-67.369,-29.1883,-25.2749,-38.1797,0,-35.1694	1/2:9:0,5,4:0:0:5,4:167,131:-24.4146,-10.8961,-9.391,-13.8485,0,-12.6444	1/2:5:0,2,3:0:0:2,3:72,104:-14.6777,-8.79993,-8.19787,-6.2322,0,-5.32911	1/1:11:0,11,0:0:0:11,0:396,0:-35.9518,-3.31133,0,-35.9518,-3.31133,-35.9518	1/2:212:0,153,59:0:0:153,59:5481,2097:-617.61,-171.233,-125.176,-446.733,0,-428.972	1/2:80:0,31,49:0:0:31,49:1116,1714:-230.775,-139.775,-130.443,-91.3562,0,-76.6057	1/1:78:0,78,0:0:0:78,0:2792,0:-251.427,-23.4803,0,-251.427,-23.4803,-251.427	1/2:6:0,2,4:0:0:2,4:72,142:-17.8016,-11.9251,-11.323,-6.23466,0,-5.03054	1/2:132:0,74,58:0:0:74,58:2608,2061:-380.167,-168.226,-145.95,-212.295,0,-194.835	1/2:39:0,29,10:0:0:29,10:1040,345:-113.056,-28.3673,-19.6375,-85.0371,0,-82.0268	1/1:96:0,96,0:0:0:96,0:3427,0:-308.494,-28.8989,0,-308.494,-28.8989,-308.494	1/1:147:0,146,0:0:0:146,0:5169,0:-464.362,-43.9504,0,-464.362,-43.9504,-464.362	1/1:124:0,124,0:0:0:124,0:4413,0:-396.819,-37.3277,0,-396.819,-37.3277,-396.819	1/2:72:0,21,50:0:0:21,50:756,1748:-203.816,-142.181,-135.86,-61.6321,0,-46.5806	1/1:92:0,92,0:0:0:92,0:3292,0:-296.382,-27.6948,0,-296.382,-27.6948,-296.382	1/1:77:0,76,1:0:0:76,1:2719,34:-244.498,-22.8783,0,-241.74,-19.7804,-241.439	1/1:61:0,61,0:0:0:61,0:2180,0:-196.192,-18.3628,0,-196.192,-18.3628,-196.192	1/1:111:0,110,0:0:0:110,0:3936,0:-353.511,-33.1133,0,-353.511,-33.1133,-353.511	1/2:113:0,46,67:0:0:46,67:1630,2334:-322.664,-189.951,-176.103,-133.065,0,-112.896	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:72:0,72,0:0:0:72,0:2572,0:-231.623,-21.6742,0,-231.623,-21.6742,-231.623	1/1:25:0,25,0:0:0:25,0:894,0:-80.738,-7.52575,0,-80.738,-7.52575,-80.738	1/1:6:0,6,0:0:0:6,0:194,0:-17.7496,-1.80618,0,-17.7496,-1.80618,-17.7496	1/1:108:0,108,0:0:0:108,0:3868,0:-347.807,-32.5112,0,-347.807,-32.5112,-347.807	1/1:36:0,36,0:0:0:36,0:1261,0:-113.713,-10.83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chr12	1442365	.	A	G	132019	PASS	AB=0.51538;ABP=10.3578;AC=143;AF=0.760638;AN=188;AO=6108;CIGAR=1X;DP=7857;DPB=7857;DPRA=28.1505;EPP=12929.8;EPPR=3680.15;GTI=2;LEN=1;MEANALT=1.04301;MQM=59.9856;MQMR=60;NS=94;NUMALT=1;ODDS=1.05663;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=218534;QR=62388;RO=1745;RPL=39;RPP=12929.8;RPPR=3671.6;RPR=6069;RUN=1;SAF=6108;SAP=13266.4;SAR=0;SRF=1744;SRP=3783.55;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	1/1:128:0,128:0:0:128:4587:-412.994,-38.5318,0	0/1:67:35,32:35:1248:32:1148:-83.4608,0,-92.4559	1/1:132:0,132:0:0:132:4714:-424.417,-39.736,0	0/1:36:13,23:13:468:23:828:-63.9007,0,-31.6226	0/1:27:13,14:13:464:14:496:-36.8464,0,-33.9697	1/1:108:0,108:0:0:108:3864:-347.954,-32.5112,0	0/1:113:50,63:50:1796:63:2260:-169.646,0,-127.906	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:140:0,140:0:0:140:4992:-449.428,-42.1442,0	1/1:121:0,121:0:0:121:4348:-391.493,-36.4246,0	0/1:108:43,65:43:1529:65:2332:-177.625,0,-105.39	1/1:83:1,82:1:36:82:2935:-260.785,-21.3872,0	1/1:151:0,151:0:0:151:5396:-485.77,-45.4555,0	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	0/1:101:52,49:52:1852:49:1760:-128.28,0,-136.556	1/1:136:0,136:0:0:136:4838:-435.574,-40.9401,0	1/1:112:0,112:0:0:112:4013:-361.357,-33.7154,0	1/1:74:1,73:1:36:73:2611:-231.639,-18.6779,0	0/1:102:54,48:54:1940:48:1728:-125.1,0,-144.171	1/1:103:0,103:0:0:103:3688:-332.123,-31.0061,0	1/1:70:1,69:1:36:69:2472:-219.135,-17.4738,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:25:5,20:5:172:20:720:-57.603,0,-8.29222	0/1:231:87,144:87:3124:144:5152:-394.284,0,-211.848	1/1:116:1,114:1:36:114:4092:-364.866,-31.38,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:187:105,82:105:3718:82:2944:-208.901,0,-278.529	0/1:92:47,45:47:1676:45:1612:-117.675,0,-123.432	1/1:82:0,82:0:0:82:2907:-261.862,-24.6845,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:267:124,143:124:4444:143:5120:-380.567,0,-319.755	0/1:79:35,44:35:1256:44:1584:-119.07,0,-89.5639	1/1:99:0,99:0:0:99:3512:-316.29,-29.802,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:86:42,44:42:1470:44:1580:-116.603,0,-106.702	0/1:35:17,18:17:608:18:640:-47.3933,0,-44.516	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:114:0,114:0:0:114:4068:-366.308,-34.3174,0	1/1:102:0,102:0:0:102:3637:-327.536,-30.7051,0	0/1:43:26,17:26:932:17:608:-42.1077,0,-71.2546	1/1:58:0,58:0:0:58:2058:-185.488,-17.4597,0	1/1:106:2,104:2:72:104:3713:-327.534,-25.0725,0	1/1:75:0,75:0:0:75:2696:-242.884,-22.5773,0	1/1:178:0,178:0:0:178:6323:-569.164,-53.5833,0	0/1:73:36,37:36:1292:37:1317:-96.8546,0,-94.6086	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:70:0,70:0:0:70:2501:-225.341,-21.0721,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/1:59:25,34:25:888:34:1209:-90.7254,0,-62.4783	0/1:209:98,111:98:3508:111:3980:-295.475,0,-253.015	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:136:0,136:0:0:136:4853:-436.924,-40.9401,0	0/1:113:41,71:41:1476:71:2529:-193.781,0,-99.061	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	0/1:49:14,35:14:500:35:1252:-98.2346,0,-30.5857	0/1:58:23,35:23:824:35:1260:-96.2457,0,-57.0236	0/1:93:52,41:52:1860:41:1458:-103.52,0,-139.684	0/1:58:27,31:27:964:31:1104:-82.2109,0,-69.6171	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:160:81,79:81:2908:79:2832:-206.954,0,-213.79	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	0/1:53:16,37:16:572:37:1332:-104.228,0,-35.8588	0/1:89:64,25:64:2269:25:896:-54.1687,0,-177.68	0/1:103:62,41:62:2204:41:1463:-100.959,0,-167.62	1/1:114:0,114:0:0:114:4069:-366.396,-34.3174,0	0/1:68:31,37:31:1093:37:1332:-99.7123,0,-78.2076	0/1:169:86,83:86:3088:83:2976:-217.198,0,-227.273	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	1/1:56:0,56:0:0:56:2004:-180.634,-16.8577,0	1/1:80:0,80:0:0:80:2853:-257.006,-24.0824,0	1/1:86:1,85:1:36:85:3040:-270.232,-22.2903,0	1/1:153:0,153:0:0:153:5464:-491.885,-46.0576,0	1/1:120:0,120:0:0:120:4320:-388.974,-36.1236,0	1/1:138:1,136:1:36:136:4861:-434.044,-38.0027,0	0/1:195:83,112:83:2969:112:4005:-301.937,0,-208.74	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:95:51,44:51:1836:44:1580:-113.894,0,-136.923	1/1:101:0,101:0:0:101:3628:-326.724,-30.404,0	1/1:87:0,86:0:0:86:3083:-277.337,-25.8886,0	0/1:148:76,72:76:2728:72:2569:-186.906,0,-201.21	0/1:89:69,20:69:2480:20:720:-38.3371,0,-196.661	1/1:39:2,37:2:72:37:1328:-112.986,-4.90345,0	1/1:133:0,133:0:0:133:4760:-428.558,-40.037,0
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chr12	1647695	.	A	G	164038	PASS	AB=0.490586;ABP=8.85684;AC=143;AF=0.760638;AN=188;AO=11534;CIGAR=1X;DP=15436;DPB=15436;DPRA=33.1849;EPP=25048.8;EPPR=8465.24;GTI=3;LEN=1;MEANALT=1.01075;MQM=29.0685;MQMR=30.7524;NS=94;NUMALT=1;ODDS=0.221241;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=411848;QR=139818;RO=3901;RPL=11534;RPP=25048.8;RPPR=8465.24;RPR=0;RUN=1;SAF=0;SAP=25048.8;SAR=11534;SRF=0;SRP=8473.92;SRR=3901;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:26,29:26:928:29:1036:-57.024,0,-52.9592	1/1:282:1,281:1:36:281:10019:-704.413,-81.9097,0	0/1:113:71,42:71:2544:42:1512:-72.5913,0,-155.49	1/1:486:1,485:1:36:485:17300:-1252.9,-143.246,0	0/1:74:39,35:39:1396:35:1260:-68.8878,0,-84.3413	0/1:140:68,72:68:2427:72:2575:-138.71,0,-135.767	1/1:278:1,277:1:36:277:9911:-709.407,-80.6318,0	0/1:377:165,212:165:5905:212:7558:-412.696,0,-321.55	1/1:181:1,180:1:36:180:6405:-446.007,-51.5057,0	1/1:266:0,266:0:0:266:9495:-684.329,-80.074,0	1/1:36:0,36:0:0:36:1283:-93.7435,-10.8371,0	0/1:93:51,42:51:1828:42:1495:-75.8744,0,-107.333	1/1:87:0,87:0:0:87:3124:-219.949,-26.1896,0	1/1:79:0,79:0:0:79:2800:-201.679,-23.7814,0	1/1:102:0,102:0:0:102:3660:-265.703,-30.7051,0	0/1:65:32,33:32:1152:33:1188:-65.5338,0,-68.0414	1/1:97:0,97:0:0:97:3458:-245.071,-29.1999,0	1/1:107:0,107:0:0:107:3816:-271.006,-32.2102,0	1/1:32:0,32:0:0:32:1144:-77.1944,-9.63296,0	0/1:288:153,135:153:5496:135:4828:-261.859,0,-330.404	1/1:208:0,208:0:0:208:7444:-540.838,-62.6142,0	1/1:161:0,161:0:0:161:5744:-381.29,-48.4658,0	1/1:148:0,148:0:0:148:5263:-379.449,-44.5524,0	1/1:228:0,228:0:0:228:8125:-586.858,-68.6348,0	0/1:134:77,57:77:2750:57:2036:-105.945,0,-168.971	0/1:738:376,362:376:13504:362:12921:-639.126,0,-725.168	1/1:299:0,299:0:0:299:10689:-770.351,-90.008,0	1/1:58:0,58:0:0:58:2076:-149.683,-17.4597,0	0/1:310:133,177:133:4748:177:6284:-326.385,0,-241.946	0/1:311:160,151:160:5720:151:5391:-295.399,0,-343.783	1/1:230:1,229:1:36:229:8197:-593.224,-66.1824,0	0/1:7:3,4:3:108:4:144:-8.63302,0,-6.4455	0/1:12:4,8:4:144:8:288:-17.5778,0,-7.68943	1/1:4:0,4:0:0:4:140:-10.348,-1.20412,0	0/1:4:3,1:3:108:1:36:-1.61696,0,-7.14199	1/1:2:0,2:0:0:2:72:-5.36005,-0.60206,0	0/1:299:161,138:161:5788:138:4930:-239.128,0,-315.926	0/1:355:162,193:162:5808:193:6892:-384.076,0,-337.162	1/1:52:0,52:0:0:52:1851:-130.217,-15.6536,0	0/1:2:1,1:1:36:1:36:-2.3007,0,-2.45248	0/1:305:141,164:141:5052:164:5867:-333.043,0,-292.803	0/1:38:23,15:23:828:15:540:-28.0385,0,-52.1577	1/1:119:1,118:1:36:118:4172:-298.519,-32.768,0	1/1:126:0,126:0:0:126:4516:-324.129,-37.9298,0	1/1:102:0,102:0:0:102:3651:-264.642,-30.7051,0	0/1:277:138,139:138:4952:139:4970:-247.178,0,-266.161	1/1:277:0,277:0:0:277:9883:-696.5,-83.3853,0	1/1:338:0,338:0:0:338:12039:-869.734,-101.748,0	1/1:208:0,208:0:0:208:7423:-540.212,-62.6142,0	1/1:226:0,226:0:0:226:8087:-585.692,-68.0328,0	0/1:352:164,188:164:5896:188:6715:-342.626,0,-309.046	0/1:2:1,1:1:36:1:36:-2.3007,0,-2.45248	1/1:144:2,142:2:72:142:5075:-351.461,-37.6849,0	1/1:63:0,63:0:0:63:2244:-149.747,-18.9649,0	1/1:13:0,13:0:0:13:468:-33.2888,-3.91339,0	1/1:210:0,209:0:0:209:7484:-541.319,-62.9153,0	1/1:137:1,136:1:36:136:4871:-349.525,-38.3383,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-11.7585	0/1:15:5,10:5:180:10:360:-19.505,0,-8.30284	0/1:134:83,51:83:2971:51:1836:-92.8887,0,-186.063	0/1:123:61,62:61:2187:62:2220:-123.87,0,-130.342	1/1:1:0,1:0:0:1:36:-2.90276,-0.30103,0	1/1:451:0,451:0:0:451:16106:-1067.22,-135.765,0	0/1:430:234,196:234:8368:196:6998:-380.062,0,-505.858	1/1:165:17,148:17:612:148:5304:-333.456,-2.63007,0	0/1:138:78,60:78:2784:60:2127:-110.64,0,-171.983	0/1:353:177,176:177:6343:176:6290:-351.342,0,-373.157	0/1:178:129,49:129:4619:49:1748:-72.6713,0,-297.726	0/1:13:9,4:9:324:4:140:-6.77456,0,-21.1338	1/1:151:1,150:1:36:150:5361:-372.717,-42.4748,0	0/1:127:64,63:64:2296:63:2256:-112.014,0,-122.598	0/1:31:14,17:14:504:17:600:-34.4928,0,-29.7915	0/1:355:177,178:177:6347:178:6353:-340.535,0,-362.332	0/1:177:89,88:89:3200:88:3143:-165.272,0,-184.401	0/1:274:128,146:128:4596:146:5206:-295.562,0,-267.402	1/1:287:0,287:0:0:287:10229:-739.069,-86.3956,0	0/1:155:84,71:84:3012:71:2530:-132.14,0,-176.25	0/1:235:113,122:113:4055:122:4352:-234.191,0,-227.199	0/1:8:4,4:4:129:4:140:-7.93973,0,-7.76785	1/1:169:0,169:0:0:169:6050:-435.299,-50.8741,0	1/1:159:0,159:0:0:159:5669:-398.091,-47.8638,0	1/1:202:0,202:0:0:202:7222:-524.966,-60.8081,0	1/1:131:0,131:0:0:131:4666:-338.025,-39.4349,0	1/1:85:0,85:0:0:85:3035:-219.449,-25.5876,0	1/1:157:0,157:0:0:157:5640:-406.318,-47.2617,0	0/1:242:111,131:111:3967:131:4674:-264.487,0,-229.613	1/1:46:0,46:0:0:46:1624:-114.188,-13.8474,0	0/1:115:61,54:61:2196:54:1920:-100.632,0,-129.253	1/1:88:0,88:0:0:88:3146:-222.308,-26.4906,0	1/1:21:0,21:0:0:21:756:-55.1525,-6.32163,0	0/1:47:22,25:22:783:25:896:-51.3501,0,-45.8413	0/1:94:74,20:74:2651:20:712:-24.035,0,-173.07	1/1:198:0,198:0:0:198:7056:-508.912,-59.6039,0	1/1:139:0,139:0:0:139:4980:-359.56,-41.8432,0
chr12	2054662	.	TTGTC	TTGTT	150719	PASS	AB=0.567032;ABP=148.86;AC=142;AF=0.763441;AN=186;AO=6917;CIGAR=4M1X;DP=8595;DPB=8594.8;DPRA=15.5598;EPP=14643.3;EPPR=3334.71;GTI=9;LEN=1;MEANALT=1.5;MQM=59.9881;MQMR=59.9902;NS=93;NUMALT=1;ODDS=1.51221;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247921;QR=56897;RO=1625;RPL=44;RPP=14643.3;RPPR=3326.27;RPR=6873;RUN=1;SAF=6917;SAP=15023.1;SAR=0;SRF=1624;SRP=3522.97;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:3,22:3:107:22:792:-63.7774,0,-2.14232	1/1:135:0,132:0:0:132:4744:-426.792,-39.736,0	0/1:134:67,66:67:2362:66:2356:-172.05,0,-172.59	1/1:148:0,148:0:0:148:5307:-477.763,-44.5524,0	0/1:56:7,49:7:241:49:1760:-141.826,0,-5.16782	0/1:20:3,17:3:108:17:612:-49.3928,0,-4.05457	1/1:170:0,169:0:0:169:6060:-545.227,-50.8741,0	0/1:137:49,88:49:1699:88:3159:-243.292,0,-111.952	1/1:126:0,125:0:0:125:4472:-402.368,-37.6288,0	1/1:147:0,146:0:0:146:5227:-470.316,-43.9504,0	1/1:24:0,23:0:0:23:824:-73.7372,-6.92369,0	0/1:80:38,42:38:1346:42:1512:-112.292,0,-97.3578	1/1:76:0,75:0:0:75:2700:-242.884,-22.5773,0	1/1:43:0,43:0:0:43:1546:-139.433,-12.9443,0	1/1:72:0,70:0:0:70:2512:-225.978,-21.0721,0	0/1:43:22,21:22:785:21:752:-55.062,0,-58.0303	1/1:59:0,59:0:0:59:2115:-190.618,-17.7608,0	1/1:82:0,82:0:0:82:2948:-265.553,-24.6845,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:234:103,130:103:3658:130:4659:-348.972,0,-258.927	0/1:224:97,126:97:3330:126:4520:-339.566,0,-232.522	0/1:58:15,42:15:533:42:1512:-119.002,0,-30.9261	1/1:82:0,82:0:0:82:2914:-262.493,-24.6845,0	1/1:108:5,101:5:179:101:3624:-309.918,-15.7688,0	0/1:35:5,30:5:177:30:1072:-86.2564,0,-5.74093	0/1:288:140,148:140:4882:148:5305:-390.885,0,-352.845	1/1:248:0,247:0:0:247:8839:-795.265,-74.3544,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:312:129,179:129:4545:179:6405:-483.489,0,-316.18	0/1:67:28,39:28:989:39:1391:-105.319,0,-69.1554	1/1:85:0,84:0:0:84:2989:-268.882,-25.2865,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:3:1,2:1:35:2:72:-5.93363,0,-2.59554	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:214:100,114:100:3502:114:4096:-304.404,0,-250.973	0/1:116:35,80:35:1216:80:2872:-223.817,0,-74.8406	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	.:.:.:.:.:.:.:.	0/1:81:40,41:40:1380:41:1476:-108.753,0,-100.11	0/1:47:23,23:23:798:23:828:-60.6369,0,-57.9289	1/1:158:0,157:0:0:157:5620:-505.551,-47.2617,0	1/1:101:0,100:0:0:100:3598:-323.801,-30.103,0	1/1:50:0,49:0:0:49:1751:-157.641,-14.7505,0	0/1:22:11,11:11:389:11:386:-28.4531,0,-28.7254	1/1:127:1,125:1:36:125:4484:-400.184,-34.6364,0	1/1:213:0,213:0:0:213:7619:-685.748,-64.1194,0	1/1:158:0,156:0:0:156:5597:-503.637,-46.9607,0	1/1:119:0,119:0:0:119:4251:-382.768,-35.8226,0	0/1:164:63,101:63:2206:101:3624:-276.995,0,-149.435	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:122:0,122:0:0:122:4369:-393.382,-36.7257,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:137:0,137:0:0:137:4928:-443.668,-41.2411,0	1/1:26:0,19:0:0:19:677:-60.912,-5.71957,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:39:21,18:21:744:18:648:-46.9117,0,-55.5441	0/1:95:43,51:43:1527:51:1832:-136.504,0,-109.066	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:252:1,251:1:31:251:8992:-806.156,-72.7601,0	0/1:151:58,93:58:2036:93:3344:-255.72,0,-138.056	1/1:70:2,67:2:72:67:2387:-208.275,-14.2409,0	0/1:71:22,49:22:773:49:1743:-135.781,0,-48.5179	0/1:159:66,91:66:2271:91:3258:-245.925,0,-157.138	0/1:54:31,23:31:1092:23:819:-57.7736,0,-82.3338	0/1:14:6,8:6:212:8:288:-22.053,0,-15.2107	1/1:56:1,54:1:36:54:1926:-170.071,-13.2633,0	0/1:61:30,31:30:1059:31:1112:-82.0285,0,-77.2574	0/1:18:6,12:6:197:12:432:-33.8027,0,-12.6334	0/1:39:21,18:21:715:18:635:-45.7368,0,-52.9253	0/1:49:19,30:19:654:30:1076:-82.4024,0,-44.4269	0/1:111:58,53:58:2012:53:1904:-138.223,0,-147.936	1/1:231:1,229:1:36:229:8198:-734.232,-65.9985,0	1/1:55:3,51:3:106:51:1836:-155.646,-6.67223,0	0/1:171:62,106:62:2182:106:3804:-291.661,0,-145.747	0/0:6:6,0:6:202:0:0:0,-1.80618,-18.5087	1/1:161:2,158:2:72:158:5657:-502.432,-41.648,0	1/1:117:0,117:0:0:117:4208:-378.899,-35.2205,0	1/1:302:0,301:0:0:301:10772:-969.016,-90.61,0	1/1:78:1,77:1:36:77:2759:-244.953,-19.8821,0	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:97:0,96:0:0:96:3452:-310.591,-28.8989,0	0/1:122:59,62:59:2075:62:2224:-163.787,0,-150.381	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:68:35,33:35:1204:33:1188:-86.7586,0,-88.1889	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:53:30,23:30:1070:23:828:-58.8895,0,-80.6575	0/1:73:45,28:45:1584:28:1008:-69.0612,0,-120.873	1/1:160:2,157:2:72:157:5629:-499.94,-41.2872,0	1/1:120:0,120:0:0:120:4286:-385.917,-36.1236,0
chr12	2054699	.	AGCC	GGCT,AGCT	459839	PASS	AB=0.55114,0.446124;ABP=177.358,196.513;AC=145,43;AF=0.771277,0.228723;AN=188;AO=13703,3462;CIGAR=1X2M1X,3M1X;DP=17213;DPB=17272.5;DPRA=23.125,1.11062;EPP=29758.7,7520.65;EPPR=9.52472;GTI=3;LEN=4,1;MEANALT=2.05376,2.40678;MQM=57.9708,59.9864;MQMR=60;NS=94;NUMALT=2;ODDS=0.98382;PAIRED=0,0;PAIREDR=0;PAO=235.5,1.5;PQA=7559,54;PQR=0;PRO=1;QA=474430,123045;QR=102;RO=3;RPL=6114,1488;RPP=347.775,151.16;RPPR=3.73412;RPR=7589,1974;RUN=1,1;SAF=6114,1488;SAP=347.775,151.16;SAR=7589,1974;SRF=1;SRP=3.73412;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:54:0,47,7:0:0:47,7:1605,252:-150.802,-20.5879,-6.43947,-130.238,0,-128.13	1/1:271:0,271,0:0:0:271,0:9434,0:-847.789,-81.5791,0,-847.789,-81.5791,-847.789	1/2:234:1,140,93:1:30:140,93:4828,3313:-659.429,-267.7,-227.954,-389.688,0,-364.09	1/1:289:0,287,0:0:0:287,0:9949,0:-894.075,-86.3956,0,-894.075,-86.3956,-894.075	1/2:71:0,62,9:0:0:62,9:2182,324:-204.395,-26.7966,-8.13272,-177.958,0,-175.248	1/1:51:0,48,3:0:0:48,3:1672,108:-150.382,-14.4494,0,-141.569,-5.63719,-140.666	1/1:254:0,253,0:0:0:253,0:8712,0:-783.051,-76.1606,0,-783.051,-76.1606,-783.051	1/2:251:0,158,93:0:0:158,93:5512,3256:-713.109,-264.92,-217.358,-448.195,0,-420.199	1/1:165:0,165,0:0:0:165,0:5723,0:-514.833,-49.67,0,-514.833,-49.67,-514.833	1/1:233:0,230,0:0:0:230,0:7915,0:-711.496,-69.2369,0,-711.496,-69.2369,-711.496	1/1:176:0,175,0:0:0:175,0:6003,0:-539.302,-52.6803,0,-539.302,-52.6803,-539.302	1/2:149:0,73,75:0:0:73,75:2501,2660:-419.663,-216.74,-194.765,-202.942,0,-180.365	1/1:176:0,175,0:0:0:175,0:6072,0:-545.734,-52.6803,0,-545.734,-52.6803,-545.734	1/1:169:0,169,0:0:0:169,0:5712,0:-513.843,-50.8741,0,-513.843,-50.8741,-513.843	1/1:133:0,133,0:0:0:133,0:4605,0:-414.295,-40.037,0,-414.295,-40.037,-414.295	1/2:122:0,63,59:0:0:63,59:2148,2104:-345.593,-171.509,-152.544,-174.074,0,-156.313	1/1:131:0,130,0:0:0:130,0:4484,0:-402.733,-39.1339,0,-402.733,-39.1339,-402.733	1/1:163:0,163,0:0:0:163,0:5640,0:-507.241,-49.0679,0,-507.241,-49.0679,-507.241	1/1:99:0,99,0:0:0:99,0:3423,0:-307.729,-29.802,0,-307.729,-29.802,-307.729	1/2:503:0,267,234:0:0:267,234:9216,8307:-1424.32,-676.868,-596.493,-747.499,0,-677.058	1/2:354:0,197,156:0:0:197,156:6846,5544:-1007.7,-451.789,-392.486,-555.921,0,-508.96	1/2:93:0,66,27:0:0:66,27:2301,959:-265.218,-78.1764,-58.3084,-187.073,0,-178.946	1/1:105:0,105,0:0:0:105,0:3632,0:-326.846,-31.6082,0,-326.846,-31.6082,-326.846	1/1:228:0,217,10:0:0:217,10:7571,360:-680.625,-65.3235,0,-651.25,-35.9493,-648.24	1/2:108:0,92,16:0:0:92,16:3176,568:-304.488,-46.6354,-18.9406,-258.206,0,-253.389	1/2:575:0,318,253:0:0:318,253:11076,9001:-1633.49,-733.592,-637.864,-899.927,0,-823.767	1/1:459:0,456,1:0:0:456,1:15815,36:-1421.95,-137.27,0,-1419.01,-134.328,-1418.71	1/1:70:0,70,0:0:0:70,0:2416,0:-217.638,-21.0721,0,-217.638,-21.0721,-217.638	1/2:608:0,306,301:0:0:306,301:10565,10752:-1734.47,-876.614,-784.499,-857.847,0,-767.237	1/2:155:0,84,71:0:0:84,71:2856,2520:-436.832,-205.317,-180.031,-231.503,0,-210.13	1/1:153:0,152,1:0:0:152,1:5270,36:-473.699,-45.7566,0,-470.762,-42.4593,-470.461	1/1:8:0,8,0:0:0:8,0:288,0:-26.2627,-2.40824,0,-26.2627,-2.40824,-26.2627	1/2:25:0,13,12:0:0:13,12:458,428:-72.5201,-35.2464,-31.3331,-37.6281,0,-34.0157	1/1:6:0,6,0:0:0:6,0:205,0:-18.7824,-1.80618,0,-18.7824,-1.80618,-18.7824	1/2:8:0,7,1:0:0:7,1:250,32:-23.309,-2.89828,-0.791073,-20.7353,0,-20.4343	1/1:7:0,7,0:0:0:7,0:243,0:-21.8476,-2.10721,0,-21.8476,-2.10721,-21.8476	1/2:412:0,197,214:0:0:197,214:6744,7602:-1166.69,-619.452,-560.149,-547.239,0,-482.818	1/2:275:0,182,93:0:0:182,93:6306,3324:-783.717,-271.383,-216.595,-512.688,0,-484.692	1/1:172:0,171,1:0:0:171,1:5919,36:-532.105,-51.4761,0,-529.168,-48.5362,-528.867	2/2:8:0,0,8:0:0:0,8:0,269:-24.5361,-24.5361,-24.5361,-2.40824,-2.40824,0	1/2:214:0,117,96:0:0:117,96:4038,3372:-602.441,-274.487,-239.266,-327.992,0,-299.093	1/2:86:0,38,48:0:0:38,48:1326,1696:-246.298,-138.474,-127.035,-108.175,0,-93.7258	1/1:279:0,277,0:0:0:277,0:9587,0:-862.016,-83.3853,0,-862.016,-83.3853,-862.016	1/1:150:0,150,0:0:0:150,0:5200,0:-468.024,-45.1545,0,-468.024,-45.1545,-468.024	1/1:122:0,122,0:0:0:122,0:4163,0:-374.217,-36.7257,0,-374.217,-36.7257,-374.217	1/2:60:0,31,28:0:0:31,28:1063,995:-167.366,-81.0854,-71.7535,-86.28,0,-77.8511	1/1:274:1,270,2:1:36:270,2:9431,72:-844.62,-78.3383,0,-839.046,-75.3982,-841.381	1/1:344:0,342,1:0:0:342,1:11879,36:-1067.82,-102.952,0,-1064.88,-99.9929,-1064.58	1/1:206:0,205,1:0:0:205,1:7119,36:-640.145,-61.7112,0,-637.207,-58.7737,-636.906	1/1:244:0,243,0:0:0:243,0:8362,0:-751.926,-73.1503,0,-751.926,-73.1503,-751.926	1/2:320:0,176,144:0:0:176,144:6162,5125:-919.261,-418.043,-365.062,-501.571,0,-458.223	1/2:19:0,7,12:0:0:7,12:241,432:-55.1709,-35.6088,-33.5016,-19.9119,0,-16.2995	1/1:302:0,302,0:0:0:302,0:10505,0:-944.542,-90.9111,0,-944.542,-90.9111,-944.542	1/1:76:0,75,1:0:0:75,1:2587,36:-232.278,-22.5773,0,-229.341,-19.28,-229.04	1/1:23:0,23,0:0:0:23,0:808,0:-73.0279,-6.92369,0,-73.0279,-6.92369,-73.0279	1/1:287:0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chr12	2054723	.	G	T	167369	PASS	AB=0.54516;ABP=79.4996;AC=147;AF=0.781915;AN=188;AO=7811;CIGAR=1X;DP=9804;DPB=9804;DPRA=13.1667;EPP=16903.6;EPPR=4289.54;GTI=3;LEN=1;MEANALT=1.07527;MQM=56.5122;MQMR=59.9678;NS=94;NUMALT=1;ODDS=1.12287;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279690;QR=70483;RO=1986;RPL=7;RPP=16903.6;RPPR=4289.54;RPR=7804;RUN=1;SAF=0;SAP=16964.4;SAR=7811;SRF=0;SRP=4315.55;SRR=1986;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:4,25:4:140:25:900:-72.5349,0,-4.21471	1/1:179:0,179:0:0:179:6389:-574.166,-53.8844,0	0/1:125:39,86:39:1384:86:3073:-238.924,0,-87.2301	1/1:164:0,164:0:0:164:5864:-526.639,-49.3689,0	1/1:21:2,19:2:64:19:684:-55.7804,-0.242936,0	1/1:36:1,35:1:36:35:1256:-109.718,-7.23881,0	1/1:109:0,109:0:0:109:3900:-350.369,-32.8123,0	0/1:151:56,95:56:2008:95:3408:-261.324,0,-135.538	1/1:64:0,64:0:0:64:2277:-205.135,-19.2659,0	1/1:120:0,120:0:0:120:4269:-383.659,-36.1236,0	1/1:166:0,166:0:0:166:5960:-535.489,-49.971,0	0/1:82:38,43:38:1310:43:1544:-114.346,0,-93.4596	1/1:113:0,112:0:0:112:4020:-361.155,-33.7154,0	1/1:135:0,135:0:0:135:4829:-434.195,-40.6391,0	1/1:70:0,70:0:0:70:2516:-226.27,-21.0721,0	0/1:82:37,45:37:1305:45:1616:-120.776,0,-93.0647	1/1:82:0,82:0:0:82:2948:-264.412,-24.6845,0	1/1:92:0,92:0:0:92:3304:-297.343,-27.6948,0	1/1:73:0,73:0:0:73:2616:-235.41,-21.9752,0	0/1:304:142,162:142:5038:162:5784:-427.319,0,-362.05	0/1:159:69,90:69:2454:90:3211:-240.945,0,-173.25	0/1:37:14,23:14:500:23:824:-63.2142,0,-34.1981	1/1:30:0,30:0:0:30:1065:-95.7808,-9.0309,0	1/1:141:6,135:6:216:135:4836:-415.007,-22.6547,0	0/1:72:10,62:10:360:62:2216:-177.805,0,-11.0701	0/1:300:123,177:123:4361:177:6340:-479.729,0,-302.358	1/1:228:1,226:1:36:226:8104:-724.761,-65.0953,0	1/1:39:0,39:0:0:39:1400:-126.232,-11.7402,0	0/1:309:176,133:176:6236:133:4753:-333.798,0,-468.32	0/1:102:47,55:47:1673:55:1963:-146.071,0,-120.146	1/1:80:1,79:1:36:79:2814:-249.637,-20.4841,0	1/1:3:0,3:0:0:3:108:-10.0704,-0.90309,0	0/1:20:10,10:10:356:10:360:-26.7081,0,-26.3606	1/1:3:0,3:0:0:3:108:-10.0729,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5474,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3104,-1.20412,0	0/1:207:119,88:119:4243:88:3141:-220.257,0,-319.735	0/1:164:59,105:59:2120:105:3760:-288.977,0,-141.7	1/1:142:0,142:0:0:142:5092:-457.892,-42.7463,0	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:142:59,83:59:2099:83:2976:-225.207,0,-146.429	0/1:46:25,21:25:896:21:752:-54.1273,0,-67.113	1/1:154:0,154:0:0:154:5498:-493.886,-46.3586,0	1/1:72:0,72:0:0:72:2584:-232.644,-21.6742,0	1/1:77:0,77:0:0:77:2749:-246.779,-23.1793,0	0/1:40:19,21:19:684:21:756:-56.3045,0,-49.8491	1/1:167:1,166:1:36:166:5941:-530.526,-46.6737,0	1/1:167:1,166:1:36:166:5955:-531.349,-46.6737,0	1/1:72:0,72:0:0:72:2565:-230.746,-21.6742,0	1/1:149:0,149:0:0:149:5348:-480.956,-44.8535,0	0/1:163:86,77:86:3061:77:2741:-197.654,0,-226.65	0/1:12:8,4:8:279:4:144:-9.69313,0,-21.8352	1/1:198:0,198:0:0:198:7078:-636.361,-59.6039,0	1/1:57:1,56:1:36:56:1996:-175.716,-13.5604,0	1/1:18:0,18:0:0:18:648:-58.6374,-5.41854,0	1/1:174:0,174:0:0:174:6242:-560.91,-52.3792,0	1/1:25:1,24:1:32:24:856:-74.1162,-4.32644,0	1/1:1:0,1:0:0:1:36:-3.59727,-0.30103,0	0/1:10:2,8:2:72:8:288:-23.2473,0,-3.82642	0/1:66:34,32:34:1216:32:1144:-83.2904,0,-89.8786	0/1:162:77,85:77:2727:85:3048:-225.425,0,-196.905	1/1:5:0,5:0:0:5:180:-16.5378,-1.50515,0	1/1:156:0,156:0:0:156:5608:-504.558,-46.9607,0	0/1:201:49,152:49:1713:152:5452:-429.502,0,-93.946	1/1:124:0,124:0:0:124:4444:-399.759,-37.3277,0	0/1:76:35,41:35:1243:41:1454:-107.678,0,-89.2952	0/1:97:39,58:39:1395:58:2057:-155.812,0,-96.6484	0/1:95:59,36:59:2120:36:1296:-88.2664,0,-162.468	0/1:70:33,36:33:1180:36:1296:-95.7439,0,-85.4447	1/1:127:0,127:0:0:127:4529:-407.413,-38.2308,0	0/1:121:54,66:54:1889:66:2364:-176.449,0,-133.801	0/1:28:17,11:17:604:11:396:-27.528,0,-46.2618	0/1:73:31,42:31:1099:42:1512:-114.295,0,-77.2443	0/1:74:30,44:30:1067:44:1576:-119.819,0,-74.065	0/1:94:45,49:45:1599:49:1744:-128.774,0,-115.903	1/1:197:0,197:0:0:197:7076:-635.268,-59.3029,0	1/1:81:0,81:0:0:81:2916:-262.404,-24.3834,0	0/1:94:53,41:53:1882:41:1468:-103.912,0,-141.352	0/1:6:1,5:1:36:5:180:-14.7413,0,-1.79209	1/1:124:0,124:0:0:124:4444:-399.591,-37.3277,0	1/1:175:1,174:1:36:174:6235:-556.915,-49.082,0	1/1:234:0,234:0:0:234:8370:-752.142,-70.441,0	1/1:114:0,114:0:0:114:4084:-367.299,-34.3174,0	1/1:125:0,124:0:0:124:4418:-396.93,-37.3277,0	1/1:90:0,90:0:0:90:3224:-290.013,-27.0927,0	0/1:133:61,72:61:2171:72:2580:-191.861,0,-155.619	1/1:48:1,47:1:36:47:1684:-147.822,-10.8512,0	0/1:95:49,45:49:1722:45:1612:-116.599,0,-126.414	1/1:105:0,105:0:0:105:3763:-338.137,-31.6082,0	1/1:148:0,148:0:0:148:5324:-478.013,-44.5524,0	0/1:202:98,104:98:3468:104:3719:-273.596,0,-251.522	0/1:75:53,22:53:1853:22:792:-48.2659,0,-144.468	1/1:84:0,84:0:0:84:3016:-271.144,-25.2865,0	1/1:111:1,110:1:36:110:3956:-352.212,-29.8161,0
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chr12	3546629	.	A	G	119910	PASS	AB=0.4556;ABP=75.3199;AC=141;AF=0.75;AN=188;AO=5881;CIGAR=1X;DP=8201;DPB=8201;DPRA=22.0349;EPP=12764.8;EPPR=5032.14;GTI=2;LEN=1;MEANALT=1;MQM=51.1102;MQMR=51.5784;NS=94;NUMALT=1;ODDS=2.20572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=209054;QR=82915;RO=2320;RPL=2;RPP=12756.1;RPPR=5032.14;RPR=5879;RUN=1;SAF=1;SAP=12764.8;SAR=5880;SRF=0;SRP=5040.83;SRR=2320;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:29,34:29:1028:34:1202:-88.9663,0,-72.989	1/1:60:0,60:0:0:60:2139:-191.565,-18.0618,0	0/1:115:73,42:73:2596:42:1475:-97.6242,0,-198.598	1/1:116:0,116:0:0:116:4121:-364.426,-34.9195,0	0/1:57:30,27:30:1076:27:955:-68.936,0,-78.6276	0/1:15:8,7:8:284:7:243:-17.6414,0,-21.0749	1/1:37:0,37:0:0:37:1332:-118.475,-11.1381,0	0/1:161:84,77:84:2991:77:2740:-197.164,0,-219.442	1/1:55:0,55:0:0:55:1955:-175.218,-16.5567,0	1/1:88:0,88:0:0:88:3100:-275.59,-26.4906,0	1/1:82:0,82:0:0:82:2899:-257.953,-24.6845,0	0/1:104:55,49:55:1968:49:1752:-125.79,0,-144.935	1/1:76:0,76:0:0:76:2728:-244.24,-22.8783,0	1/1:62:0,62:0:0:62:2215:-199.069,-18.6639,0	1/1:49:0,49:0:0:49:1751:-155.566,-14.7505,0	0/1:63:35,28:35:1256:28:992:-70.3683,0,-92.8767	1/1:40:0,40:0:0:40:1420:-127.651,-12.0412,0	1/1:29:0,29:0:0:29:1036:-93.3211,-8.72987,0	1/1:35:0,35:0:0:35:1248:-111.834,-10.5361,0	0/1:265:145,120:145:5200:120:4249:-297.929,0,-379.564	0/1:143:86,57:86:3083:57:2016:-138.395,0,-233.909	0/1:101:69,32:69:2472:32:1140:-70.7297,0,-191.832	1/1:120:0,120:0:0:120:4278:-379.497,-36.1236,0	0/1:57:7,50:7:252:50:1792:-143.758,0,-5.7108	0/1:102:55,47:55:1959:47:1663:-118.849,0,-144.894	0/1:233:125,108:125:4464:108:3849:-275.693,0,-330.2	1/1:255:1,254:1:36:254:9069:-810.004,-73.1695,0	1/1:22:0,22:0:0:22:788:-71.1267,-6.62266,0	0/1:187:86,101:86:3076:101:3613:-268.202,0,-220.254	0/1:136:67,69:67:2400:69:2463:-180.426,0,-174.633	1/1:94:3,91:3:108:91:3247:-276.738,-18.2289,0	0/1:11:4,7:4:140:7:252:-19.685,0,-9.6172	0/1:16:6,10:6:207:10:360:-27.8814,0,-14.1264	1/1:9:0,9:0:0:9:324:-29.4317,-2.70927,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2801	1/1:18:0,18:0:0:18:640:-57.7917,-5.41854,0	0/1:165:96,69:96:3444:69:2451:-170.838,0,-259.939	0/1:124:64,60:64:2296:60:2119:-152.858,0,-168.846	1/1:57:0,57:0:0:57:2010:-180.465,-17.1587,0	0/1:4:2,2:2:72:2:72:-5.62291,0,-5.62291	1/1:96:1,95:1:36:95:3385:-300.252,-25.3057,0	1/1:50:0,50:0:0:50:1774:-158.693,-15.0515,0	1/1:131:2,129:2:72:129:4547:-401.617,-32.6079,0	1/1:74:0,74:0:0:74:2636:-234.824,-22.2762,0	0/1:68:37,31:37:1311:31:1104:-77.2408,0,-96.128	0/1:129:68,61:68:2444:61:2160:-155.689,0,-180.77	1/1:135:0,135:0:0:135:4814:-431.061,-40.6391,0	1/1:139:0,139:0:0:139:4932:-437.492,-41.8432,0	1/1:108:0,108:0:0:108:3855:-341.768,-32.5112,0	1/1:136:1,135:1:36:135:4802:-423.456,-37.4191,0	0/1:113:52,61:52:1868:61:2161:-159.439,0,-134.292	0/1:6:4,2:4:144:2:72:-5.02561,0,-11.4978	1/1:180:0,180:0:0:180:6365:-570.79,-54.1854,0	1/1:28:0,28:0:0:28:995:-89.7479,-8.42884,0	1/1:17:0,17:0:0:17:612:-54.9088,-5.11751,0	1/1:90:0,90:0:0:90:3216:-289.206,-27.0927,0	1/1:32:0,32:0:0:32:1129:-99.3166,-9.63296,0	0/1:18:4,14:4:144:14:504:-40.2521,0,-7.87321	0/1:10:1,9:1:36:9:324:-26.3614,0,-0.584268	0/1:70:32,38:32:1152:38:1360:-101.394,0,-82.2683	0/1:98:64,34:64:2288:34:1216:-78.3699,0,-172.932	1/1:3:0,3:0:0:3:104:-9.6273,-0.90309,0	1/1:188:0,188:0:0:188:6674:-599.719,-56.5936,0	0/1:131:81,50:81:2904:50:1777:-118.515,0,-215.623	1/1:95:7,88:7:252:88:3099:-255.236,-5.72834,0	0/1:89:38,51:38:1360:51:1822:-134.245,0,-93.8226	0/1:151:87,64:87:3107:64:2277:-155.939,0,-229.841	0/1:159:119,40:119:4241:40:1436:-80.1627,0,-328.166	0/1:69:39,30:39:1391:30:1058:-74.4962,0,-103.62	0/1:68:39,29:39:1396:29:1020:-70.046,0,-104.491	0/1:39:24,15:24:838:15:536:-36.7474,0,-63.8097	0/1:30:22,8:22:772:8:269:-15.2402,0,-60.0615	0/1:110:57,53:57:2033:53:1891:-136.393,0,-148.697	0/1:119:66,53:66:2368:53:1881:-132.828,0,-176.476	0/1:77:40,37:40:1436:37:1309:-94.7068,0,-106.048	1/1:192:0,192:0:0:192:6839:-605.837,-57.7978,0	0/1:94:50,44:50:1800:44:1565:-112.373,0,-132.498	0/1:133:79,54:79:2823:54:1929:-133.335,0,-213.157	0/1:18:2,16:2:72:16:572:-46.263,0,-1.40099	1/1:100:0,100:0:0:100:3526:-316.8,-30.103,0	1/1:67:0,67:0:0:67:2387:-213.611,-20.169,0	1/1:143:0,143:0:0:143:5098:-452.557,-43.0473,0	1/1:54:0,54:0:0:54:1914:-170.057,-16.2556,0	1/1:72:0,72:0:0:72:2549:-225.695,-21.6742,0	1/1:38:0,38:0:0:38:1360:-120.739,-11.4391,0	1/1:89:1,88:1:36:88:3129:-273.024,-23.196,0	1/1:29:0,29:0:0:29:1016:-91.4041,-8.72987,0	0/1:64:37,27:37:1305:27:964:-67.5019,0,-97.4661	1/1:79:0,79:0:0:79:2819:-252.387,-23.7814,0	1/1:48:0,48:0:0:48:1691:-151.984,-14.4494,0	0/1:152:70,82:70:2499:82:2905:-215.192,0,-178.655	0/1:86:61,25:61:2163:25:896:-53.969,0,-163.236	1/1:161:0,161:0:0:161:5711:-507.512,-48.4658,0	1/1:96:1,95:1:36:95:3370:-295.629,-25.3016,0
chr12	3546665	.	CGCTT	CGCTC,TGCTC	172662	PASS	AB=0.448625,0.547143;ABP=100.514,85.1112;AC=141,47;AF=0.75,0.25;AN=188;AO=5840,2348;CIGAR=4M1X,1X3M1X;DP=8229;DPB=8229;DPRA=22.1102,1.27365;EPP=12684.4,5101.63;EPPR=5.18177;GTI=2;LEN=1,5;MEANALT=1.94624,2.2963;MQM=51.1688,51.5302;MQMR=60;NS=94;NUMALT=2;ODDS=1.32441;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=208794,83051;QR=31;RO=1;RPL=5840,2348;RPP=12684.4,5101.63;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12684.4,5101.63;SAR=5840,2348;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:66:0,36,30:0:0:36,30:1292,1055:-189.784,-85.3189,-74.4818,-104.817,0,-95.7863	1/1:63:0,63,0:0:0:63,0:2256,0:-201.975,-18.9649,0,-201.975,-18.9649,-201.975	1/2:118:0,43,75:0:0:43,75:1548,2654:-341.341,-215.862,-202.917,-125.835,0,-103.258	1/1:115:0,115,0:0:0:115,0:4105,0:-362.971,-34.6185,0,-362.971,-34.6185,-362.971	1/2:57:0,28,29:0:0:28,29:1000,1031:-164.37,-83.0808,-74.652,-81.6423,0,-72.9124	1/2:15:0,7,8:0:0:7,8:252,279:-43.3889,-22.8781,-20.7709,-20.8639,0,-18.4556	1/1:37:0,37,0:0:0:37,0:1317,0:-117.125,-11.1381,0,-117.125,-11.1381,-117.125	1/2:163:0,77,86:0:0:77,86:2724,3043:-467.16,-246.635,-223.456,-220.876,0,-194.987	1/1:54:0,54,0:0:0:54,0:1932,0:-173.146,-16.2556,0,-173.146,-16.2556,-173.146	1/1:86:0,86,0:0:0:86,0:3084,0:-273.998,-25.8886,0,-273.998,-25.8886,-273.998	1/1:81:0,81,0:0:0:81,0:2908,0:-258.356,-24.3834,0,-258.356,-24.3834,-258.356	1/2:104:0,49,55:0:0:49,55:1764,1945:-300.921,-157.865,-143.114,-143.411,0,-126.855	1/1:76:0,76,0:0:0:76,0:2724,0:-243.885,-22.8783,0,-243.885,-22.8783,-243.885	1/1:62:0,61,0:0:0:61,0:2173,0:-195.06,-18.3628,0,-195.06,-18.3628,-195.06	1/1:49:0,49,0:0:0:49,0:1764,0:-156.71,-14.7505,0,-156.71,-14.7505,-156.71	1/2:62:0,27,35:0:0:27,35:972,1240:-178.993,-99.9458,-91.818,-79.4024,0,-68.8664	1/1:41:0,41,0:0:0:41,0:1468,0:-131.911,-12.3422,0,-131.911,-12.3422,-131.911	1/1:27:0,27,0:0:0:27,0:972,0:-87.5716,-8.12781,0,-87.5716,-8.12781,-87.5716	1/1:36:0,36,0:0:0:36,0:1296,0:-116.089,-10.8371,0,-116.089,-10.8371,-116.089	1/2:270:0,122,148:0:0:122,148:4361,5221:-767.356,-417.177,-380.452,-350.529,0,-305.976	1/2:146:0,57,87:0:0:57,87:2029,3080:-415.274,-250.183,-233.025,-165.086,0,-138.896	1/2:101:0,29,69:0:0:29,69:1024,2455:-283.01,-199.671,-190.942,-83.3925,0,-62.6214	1/1:121:0,118,0:0:0:118,0:4217,0:-374.141,-35.5215,0,-374.141,-35.5215,-374.141	1/2:56:0,48,8:0:0:48,8:1720,287:-163.248,-23.6054,-9.15596,-139.999,0,-137.591	1/2:102:0,46,56:0:0:46,56:1641,1982:-294.376,-160.957,-147.109,-133.773,0,-116.915	1/2:233:0,105,127:0:0:105,127:3760,4504:-670.921,-365.054,-333.446,-305.914,0,-267.683	1/1:256:0,255,1:0:0:255,1:9110,36:-817.244,-76.7627,0,-814.311,-73.4705,-814.01	1/1:22:0,22,0:0:0:22,0:792,0:-71.4827,-6.62266,0,-71.4827,-6.62266,-71.4827	1/2:188:0,100,88:0:0:100,88:3588,3126:-546.573,-254.502,-224.399,-292.428,0,-265.937	1/2:137:0,69,68:0:0:69,68:2457,2364:-391.672,-191.975,-171.204,-200.048,0,-179.578	1/1:95:0,92,3:0:0:92,3:3304,108:-291.407,-27.6948,0,-282.601,-18.5299,-281.698	1/2:11:0,7,4:0:0:7,4:252,144:-32.6204,-12.0906,-9.98341,-20.8891,0,-19.685	1/2:16:0,10,6:0:0:10,6:360,204:-46.2071,-16.8665,-13.8562,-29.6876,0,-27.8814	1/1:9:0,9,0:0:0:9,0:320,0:-29.0731,-2.70927,0,-29.0731,-2.70927,-29.0731	2/2:4:0,0,4:0:0:0,4:0,144:-13.2801,-13.2801,-13.2801,-1.20412,-1.20412,0	1/1:17:0,17,0:0:0:17,0:612,0:-55.2741,-5.11751,0,-55.2741,-5.11751,-55.2741	1/2:167:0,69,98:0:0:69,98:2467,3489:-485.014,-284.198,-263.427,-201.172,0,-171.671	1/2:128:0,59,69:0:0:59,69:2089,2443:-367.896,-198.421,-180.66,-169.827,0,-149.056	1/1:56:0,56,0:0:0:56,0:1981,0:-177.737,-16.8577,0,-177.737,-16.8577,-177.737	1/2:4:0,2,2:0:0:2,2:72,72:-12.0906,-6.22497,-5.62291,-6.22497,0,-5.62291	1/1:97:0,96,1:0:0:96,1:3421,36:-306.795,-28.8989,0,-303.862,-25.6067,-303.561	1/1:50:0,48,1:0:0:48,1:1728,36:-154.395,-14.4494,0,-151.588,-11.6414,-151.287	1/1:128:0,126,2:0:0:126,2:4505,71:-404.495,-37.9298,0,-398.718,-31.7985,-398.116	1/1:74:0,74,0:0:0:74,0:2652,0:-236.203,-22.2762,0,-236.203,-22.2762,-236.203	1/2:67:0,30,37:0:0:30,37:1076,1303:-190.685,-104.778,-95.747,-86.2564,0,-75.1183	1/2:130:0,59,69:0:0:59,69:2105,2425:-368.257,-196.857,-179.096,-171.397,0,-150.626	1/1:135:0,133,0:0:0:133,0:4743,0:-424.659,-40.037,0,-424.659,-40.037,-424.659	1/1:144:0,142,0:0:0:142,0:5087,0:-450.598,-42.7463,0,-450.598,-42.7463,-450.598	1/1:106:0,103,0:0:0:103,0:3681,0:-326.151,-31.0061,0,-326.151,-31.0061,-326.151	1/1:135:0,133,1:0:0:133,1:4772,36:-423.779,-40.037,0,-420.911,-37.1682,-420.61	1/2:114:0,61,53:0:0:61,53:2192,1871:-330.097,-152.629,-134.266,-177.823,0,-161.868	1/2:6:0,2,4:0:0:2,4:72,138:-17.4236,-11.5484,-10.9464,-6.22973,0,-5.02561	1/1:183:0,183,0:0:0:183,0:6502,0:-582.334,-55.0885,0,-582.334,-55.0885,-582.334	1/1:28:0,28,0:0:0:28,0:993,0:-89.5661,-8.42884,0,-89.5661,-8.42884,-89.5661	1/1:17:0,17,0:0:0:17,0:612,0:-54.9088,-5.11751,0,-54.9088,-5.11751,-54.9088	1/1:89:0,89,0:0:0:89,0:3196,0:-287.4,-26.7917,0,-287.4,-26.7917,-287.4	1/1:33:0,32,0:0:0:32,0:1129,0:-99.5938,-9.6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chr12	3973698	.	G	A	101993	PASS	AB=0.443791;ABP=82.3468;AC=147;AF=0.781915;AN=188;AO=4836;CIGAR=1X;DP=6461;DPB=6461;DPRA=69.4624;EPP=10504.3;EPPR=3529.48;GTI=3;LEN=1;MEANALT=1.01075;MQM=59.5695;MQMR=59.9378;NS=94;NUMALT=1;ODDS=0.0667582;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172541;QR=58021;RO=1624;RPL=4836;RPP=10504.3;RPPR=3529.48;RPR=0;RUN=1;SAF=4836;SAP=10504.3;SAR=0;SRF=1624;SRP=3529.48;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:15,18:15:536:18:642:-48.1655,0,-38.6408	1/1:79:0,79:0:0:79:2840:-255.829,-23.7814,0	0/1:116:56,60:56:2004:60:2152:-159.011,0,-145.714	1/1:149:0,149:0:0:149:5279:-475.06,-44.8535,0	0/1:17:13,4:13:453:4:140:-7.82707,0,-35.9819	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:102:56,46:56:2000:46:1648:-117.894,0,-149.569	1/1:67:0,67:0:0:67:2384:-214.766,-20.169,0	1/1:74:0,74:0:0:74:2641:-237.748,-22.2762,0	1/1:42:0,42:0:0:42:1508:-136.008,-12.6433,0	1/1:83:0,83:0:0:83:2914:-262.096,-24.9855,0	1/1:75:0,75:0:0:75:2688:-242.126,-22.5773,0	1/1:80:0,80:0:0:80:2860:-257.606,-24.0824,0	1/1:75:0,75:0:0:75:2686:-241.981,-22.5773,0	1/1:77:1,76:1:36:76:2732:-242.493,-19.581,0	1/1:46:0,46:0:0:46:1644:-148.184,-13.8474,0	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:39:0,39:0:0:39:1404:-125.373,-11.7402,0	0/1:80:47,33:47:1673:33:1171:-81.6081,0,-126.773	0/1:89:56,33:56:2012:33:1184:-79.8772,0,-154.561	0/1:103:76,27:76:2727:27:968:-56.4276,0,-214.661	1/1:55:0,55:0:0:55:1959:-176.498,-16.5567,0	1/1:21:0,21:0:0:21:748:-67.6361,-6.32163,0	1/1:40:0,40:0:0:40:1432:-129.178,-12.0412,0	0/1:161:86,75:86:3092:75:2669:-191.851,0,-230.041	1/1:221:0,221:0:0:221:7887:-709.453,-66.5276,0	1/1:23:0,23:0:0:23:828:-74.8395,-6.92369,0	0/1:264:153,111:153:5436:111:3969:-277.823,0,-409.894	0/1:83:45,38:45:1608:38:1332:-95.1869,0,-120.023	1/1:81:2,79:2:72:79:2771:-242.784,-17.5467,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:25:16,9:16:553:9:313:-20.979,0,-42.5683	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:148:66,82:66:2372:82:2932:-219.551,0,-169.185	0/1:57:35,22:35:1233:22:788:-54.0861,0,-94.1134	1/1:69:0,69:0:0:69:2480:-223.445,-20.7711,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:42:0,42:0:0:42:1504:-135.645,-12.6433,0	1/1:54:0,54:0:0:54:1936:-174.512,-16.2556,0	1/1:82:1,81:1:36:81:2900:-257.491,-21.0862,0	1/1:63:1,62:1:36:62:2207:-195.28,-15.3666,0	0/1:54:23,31:23:828:31:1096:-82.6916,0,-58.5885	0/1:52:17,35:17:612:35:1256:-97.6885,0,-39.7599	1/1:85:0,85:0:0:85:3036:-273.192,-25.5876,0	1/1:102:0,102:0:0:102:3636:-327.11,-30.7051,0	1/1:77:0,77:0:0:77:2747:-247.452,-23.1793,0	1/1:111:0,111:0:0:111:3969:-357.303,-33.4143,0	0/1:75:37,38:37:1332:38:1356:-99.7596,0,-97.6036	0/1:4:2,2:2:63:2:72:-5.6326,0,-4.74915	1/1:88:0,88:0:0:88:3148:-282.875,-26.4906,0	1/1:37:0,37:0:0:37:1305:-117.376,-11.1381,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:86:0,86:0:0:86:3065:-275.97,-25.8886,0	1/1:27:0,27:0:0:27:955:-86.2648,-8.12781,0	0/1:11:5,6:5:180:6:216:-16.4783,0,-13.2407	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:31:0,31:0:0:31:1097:-99.0334,-9.33193,0	0/1:103:58,45:58:2071:45:1604:-113.641,0,-155.654	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:133:1,132:1:36:132:4709:-420.312,-36.4387,0	0/1:132:71,61:71:2552:61:2192:-157.8,0,-190.194	1/1:38:3,35:3:108:35:1225:-100.467,-1.36397,0	0/1:86:48,38:48:1716:38:1341:-95.0991,0,-128.837	0/1:153:81,72:81:2889:72:2580:-186.374,0,-214.187	0/1:90:65,25:65:2324:25:896:-53.8467,0,-182.327	0/1:43:21,22:21:756:22:788:-58.2959,0,-55.4229	0/1:15:8,7:8:288:7:252:-18.5052,0,-21.752	0/1:43:19,24:19:668:24:864:-65.1374,0,-47.5014	0/1:22:11,11:11:396:11:396:-29.3554,0,-29.3601	0/1:92:62,30:62:2209:30:1076:-69.4581,0,-171.378	0/1:89:53,36:53:1895:36:1292:-89.7839,0,-144.028	0/1:70:34,36:34:1220:36:1292:-95.4552,0,-89.0347	1/1:123:1,122:1:36:122:4349:-387.926,-33.4284,0	0/1:78:44,34:44:1584:34:1209:-85.6329,0,-119.343	0/1:73:35,38:35:1247:38:1358:-100.53,0,-90.5589	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	1/1:67:3,64:3:108:64:2288:-196.107,-10.0938,0	1/1:107:0,107:0:0:107:3794:-340.784,-32.2102,0	1/1:80:0,79:0:0:79:2815:-253.129,-23.7814,0	1/1:53:0,53:0:0:53:1896:-170.916,-15.9546,0	1/1:76:0,76:0:0:76:2704:-243.592,-22.8783,0	1/1:44:0,44:0:0:44:1579:-142.393,-13.2453,0	1/1:95:1,94:1:36:94:3356:-298.646,-24.9996,0	1/1:25:0,25:0:0:25:896:-80.9476,-7.52575,0	0/1:58:25,33:25:881:33:1166:-87.7717,0,-62.1461	1/1:68:0,68:0:0:68:2378:-214.24,-20.47,0	1/1:70:1,69:1:36:69:2480:-219.854,-17.4738,0	0/1:141:86,55:86:3072:55:1945:-132.842,0,-234.262	0/1:86:60,26:60:2135:26:928:-57.9497,0,-166.399	1/1:118:0,118:0:0:118:4240:-381.753,-35.5215,0	1/1:88:0,88:0:0:88:3147:-283.446,-26.4906,0
chr12	3973782	.	A	G	143144	PASS	AB=0.487617;ABP=8.01192;AC=147;AF=0.781915;AN=188;AO=6775;CIGAR=1X;DP=8705;DPB=8705;DPRA=0;EPP=14706.1;EPPR=4187.44;GTI=0;LEN=1;MEANALT=1.03191;MQM=48.9114;MQMR=59.3373;NS=94;NUMALT=1;ODDS=2.44656;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=242369;QR=69098;RO=1927;RPL=6775;RPP=14714.7;RPPR=4187.44;RPR=0;RUN=1;SAF=1;SAP=14706.1;SAR=6774;SRF=0;SRP=4187.44;SRR=1927;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:22,31:22:792:31:1112:-83.2652,0,-55.2973	1/1:87:0,87:0:0:87:3116:-277.142,-26.1896,0	0/1:82:44,38:44:1568:38:1360:-96.9035,0,-115.35	1/1:212:0,212:0:0:212:7571:-676.43,-63.8184,0	0/1:45:27,18:27:964:18:644:-43.7245,0,-73.5305	0/1:65:29,36:29:1044:36:1292:-95.9359,0,-74.0795	1/1:108:0,108:0:0:108:3862:-344.118,-32.5112,0	0/1:83:38,45:38:1368:45:1604:-118.387,0,-98.4177	1/1:84:0,84:0:0:84:3000:-267.368,-25.2865,0	1/1:138:0,138:0:0:138:4948:-441.786,-41.5421,0	1/1:63:0,63:0:0:63:2264:-202.81,-18.9649,0	1/1:93:0,93:0:0:93:3327:-295.933,-27.9958,0	1/1:91:0,91:0:0:91:3227:-286.641,-27.3937,0	1/1:105:0,105:0:0:105:3759:-336.368,-31.6082,0	1/1:90:0,90:0:0:90:3215:-287.026,-27.0927,0	1/1:71:0,71:0:0:71:2552:-227.632,-21.3731,0	1/1:87:0,87:0:0:87:3109:-275.101,-26.1896,0	1/1:91:0,91:0:0:91:3254:-291.181,-27.3937,0	1/1:47:1,46:1:36:46:1645:-142.882,-10.5501,0	0/1:228:102,125:102:3660:125:4488:-330.308,0,-260.852	0/1:70:35,35:35:1248:35:1248:-91.0322,0,-91.539	0/1:97:73,24:73:2628:24:860:-47.7072,0,-207.471	1/1:176:1,175:1:36:175:6251:-553.869,-49.383,0	0/1:117:16,101:16:568:101:3620:-288.325,0,-16.2314	1/1:55:0,55:0:0:55:1976:-176.977,-16.5567,0	0/1:271:154,117:154:5532:117:4193:-292.122,0,-416.304	1/1:186:0,186:0:0:186:6671:-595.03,-55.9916,0	1/1:47:0,47:0:0:47:1688:-150.457,-14.1484,0	0/1:219:100,119:100:3588:119:4255:-315.545,0,-257.171	0/1:138:73,65:73:2616:65:2323:-165.373,0,-193.939	1/1:249:0,248:0:0:248:8881:-790.744,-74.6554,0	0/1:4:3,1:3:108:1:36:-2.37893,0,-8.84263	0/1:16:9,7:9:324:7:252:-18.0544,0,-24.6755	1/1:1:0,1:0:0:1:25:-2.45873,-0.30103,0	0/1:9:6,3:6:216:3:108:-7.31128,0,-17.0812	1/1:7:0,7:0:0:7:248:-22.55,-2.10721,0	0/1:259:145,114:145:5208:114:4068:-284.363,0,-390.1	0/1:163:75,88:75:2700:88:3145:-230.973,0,-194.175	1/1:76:0,76:0:0:76:2706:-240.851,-22.8783,0	0/1:5:2,3:2:72:3:108:-8.52739,0,-5.33157	1/1:124:0,124:0:0:124:4427:-396.106,-37.3277,0	1/1:51:0,51:0:0:51:1817:-162.839,-15.3525,0	1/1:107:0,107:0:0:107:3828:-342.678,-32.2102,0	1/1:98:0,98:0:0:98:3503:-313.031,-29.5009,0	0/1:92:50,41:50:1788:41:1472:-104.268,0,-133.5	0/1:96:55,41:55:1972:41:1467:-101.921,0,-148.586	1/1:65:0,65:0:0:65:2309:-206.144,-19.567,0	1/1:93:0,93:0:0:93:3309:-294.438,-27.9958,0	1/1:84:0,84:0:0:84:3007:-266.872,-25.2865,0	1/1:62:0,62:0:0:62:2228:-198.982,-18.6639,0	0/1:140:84,56:84:3008:56:1996:-136.487,0,-228.763	0/1:11:6,5:6:216:5:180:-12.9234,0,-16.4792	1/1:61:1,60:1:36:60:2156:-189.033,-14.7646,0	1/1:48:0,48:0:0:48:1728:-155.146,-14.4494,0	1/1:11:0,11:0:0:11:396:-35.4578,-3.31133,0	1/1:94:0,94:0:0:94:3371:-298.21,-28.2968,0	1/1:56:0,56:0:0:56:2004:-179.252,-16.8577,0	1/1:2:0,2:0:0:2:72:-6.80779,-0.60206,0	0/1:17:14,3:14:504:3:108:-4.91503,0,-40.569	1/1:88:0,88:0:0:88:3125:-278.598,-26.4906,0	0/1:143:62,81:62:2232:81:2879:-213.83,0,-158.082	1/1:1:0,1:0:0:1:36:-3.58305,-0.30103,0	1/1:216:0,216:0:0:216:7752:-691.697,-65.0225,0	0/1:91:40,51:40:1436:51:1832:-136.819,0,-102.093	1/1:48:1,47:1:36:47:1680:-147.218,-10.8512,0	0/1:62:31,31:31:1112:31:1116:-81.1061,0,-81.7193	0/1:128:56,72:56:2012:72:2584:-192.602,0,-142.678	0/1:24:20,4:20:716:4:144:-5.93177,0,-57.5421	0/1:24:5,19:5:180:19:684:-54.396,0,-9.31334	0/1:26:12,14:12:417:14:504:-37.6236,0,-30.0334	0/1:119:59,60:59:2124:60:2152:-156.599,0,-154.286	0/1:24:16,8:16:572:8:288:-18.9315,0,-44.5749	0/1:59:49,10:49:1760:10:360:-14.7207,0,-140.816	0/1:42:30,12:30:1068:12:432:-26.2801,0,-83.7359	0/1:237:110,127:110:3944:127:4529:-332.596,0,-283.756	1/1:132:0,132:0:0:132:4722:-422.159,-39.736,0	0/1:72:41,31:41:1468:31:1084:-75.581,0,-110.728	0/1:87:50,37:50:1773:37:1320:-91.1246,0,-133.619	0/1:6:4,2:4:144:2:72:-4.99348,0,-11.4894	1/1:64:0,64:0:0:64:2285:-203.755,-19.2659,0	1/1:72:0,72:0:0:72:2570:-229.312,-21.6742,0	1/1:178:0,178:0:0:178:6369:-570.014,-53.5833,0	1/1:130:0,130:0:0:130:4655:-414.581,-39.1339,0	1/1:121:0,121:0:0:121:4344:-388.445,-36.4246,0	1/1:163:0,163:0:0:163:5841:-521.011,-49.0679,0	1/1:189:1,188:1:36:188:6708:-592.909,-53.2964,0	1/1:61:0,61:0:0:61:2192:-195.718,-18.3628,0	0/1:98:44,54:44:1580:54:1940:-144.133,0,-111.936	1/1:73:0,73:0:0:73:2615:-232.835,-21.9752,0	1/1:54:0,54:0:0:54:1923:-171.197,-16.2556,0	0/1:99:41,58:41:1472:58:2084:-156.622,0,-102.862	0/1:134:90,44:90:3216:44:1561:-99.7944,0,-249.195	1/1:88:0,88:0:0:88:3160:-282.471,-26.4906,0	1/1:152:0,152:0:0:152:5438:-484.519,-45.7566,0
chr12	4111804	.	C	T	39095.4	PASS	AB=0.509518;ABP=6.89591;AC=40;AF=0.212766;AN=188;AO=2525;CIGAR=1X;DP=9908;DPB=9908;DPRA=1.34203;EPP=5485.98;EPPR=15874.7;GTI=5;LEN=1;MEANALT=1.02174;MQM=40.5184;MQMR=53.5961;NS=94;NUMALT=1;ODDS=0.837358;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=89975;QR=261333;RO=7381;RPL=2525;RPP=5485.98;RPPR=15874.7;RPR=0;RUN=1;SAF=2525;SAP=5485.98;SAR=0;SRF=7381;SRP=16030.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:7,14:7:243:14:504:-36.5402,0,-15.8189	0/0:195:195,0:195:6881:0:0:0,-58.7008,-614.782	0/1:228:131,97:131:4669:97:3446:-221.241,0,-347.534	0/0:214:214,0:214:7639:0:0:0,-64.4204,-685.401	0/1:88:41,47:41:1472:47:1676:-116.216,0,-103.676	0/1:93:49,44:49:1721:44:1584:-106.316,0,-124.885	0/0:192:192,0:192:6838:0:0:0,-57.7978,-614.338	0/1:212:113,99:113:4026:99:3522:-232.345,0,-296.271	0/0:83:83,0:83:2923:0:0:0,-24.9855,-261.449	0/0:86:86,0:86:3026:0:0:0,-25.8886,-271.346	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.054	0/0:70:70,0:70:2487:0:0:0,-21.0721,-223.004	0/0:75:75,0:75:2620:0:0:0,-22.5772,-234.475	0/0:91:91,0:91:3220:0:0:0,-27.3937,-289.143	0/0:51:51,0:51:1802:0:0:0,-15.3525,-162.164	0/0:42:42,0:42:1491:0:0:0,-12.6433,-134.099	0/0:100:100,0:100:3523:0:0:0,-30.103,-316.105	0/0:49:49,0:49:1713:0:0:0,-14.7505,-153.759	0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.169	0/1:171:98,73:98:3479:73:2604:-175.907,0,-260.687	0/1:213:106,107:106:3725:107:3801:-264.067,0,-270.254	0/1:145:38,107:38:1320:107:3831:-293.7,0,-75.3594	0/0:70:69,1:69:2459:1:36:0,-17.5694,-217.503	0/1:66:58,8:58:2046:8:288:-5.4105,0,-164.076	0/0:83:83,0:83:2928:0:0:0,-24.9855,-262.363	0/1:291:144,147:144:5118:147:5185:-368.991,0,-372.632	0/0:175:175,0:175:6201:0:0:0,-52.6802,-555.88	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.7749	0/1:303:148,155:148:5252:155:5568:-396.781,0,-381.152	0/1:291:167,124:167:5886:124:4405:-291.133,0,-438.996	0/0:134:133,1:133:4661:1:36:0,-36.8353,-415.634	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	0/1:14:11,3:11:392:3:108:-5.45815,0,-31.1795	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4978	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.086	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.1863	0/1:138:64,74:64:2273:74:2621:-190.13,0,-163.044	0/1:283:141,142:141:5021:142:5076:-350.14,0,-363.829	0/0:57:57,0:57:2031:0:0:0,-17.1587,-181.823	0/1:4:2,2:2:68:2:72:-5.35941,0,-5.2468	0/0:182:182,0:182:6441:0:0:0,-54.7875,-577.389	0/0:30:30,0:30:1050:0:0:0,-9.0309,-94.5321	0/0:224:224,0:224:7950:0:0:0,-67.4307,-711.864	0/0:54:54,0:54:1900:0:0:0,-16.2556,-171.069	0/1:59:27,32:27:942:32:1152:-81.5877,0,-67.261	0/1:199:86,113:86:3050:113:4014:-292.493,0,-214.645	0/0:149:149,0:149:5277:0:0:0,-44.8535,-471.232	0/0:191:191,0:191:6745:0:0:0,-57.4967,-605.993	0/0:89:89,0:89:3175:0:0:0,-26.7917,-285.606	0/0:147:147,0:147:5225:0:0:0,-44.2514,-469.699	0/1:160:62,98:62:2228:98:3498:-260.46,0,-152.001	0/1:6:3,3:3:104:3:104:-7.68025,0,-7.89081	0/0:164:164,0:164:5825:0:0:0,-49.3689,-521.484	0/0:105:105,0:105:3732:0:0:0,-31.6081,-335.742	0/0:10:10,0:10:336:0:0:0,-3.0103,-30.4686	0/0:156:154,2:154:5460:2:72:0,-40.3971,-482.269	0/0:25:25,0:25:876:0:0:0,-7.52575,-78.89	0/0:12:11,1:11:396:1:36:0,-0.0762369,-32.4149	0/1:18:10,8:10:360:8:284:-20.0202,0,-27.3123	0/0:97:97,0:97:3449:0:0:0,-29.1999,-309.442	0/1:131:51,80:51:1823:80:2851:-209.163,0,-124.649	0/1:4:3,1:3:104:1:36:-2.29858,0,-8.49287	0/0:181:181,0:181:6420:0:0:0,-54.4864,-576.148	0/1:238:138,100:138:4897:100:3537:-236.62,0,-368.043	0/0:73:70,3:70:2489:3:108:0,-12.3026,-214.045	0/1:87:41,46:41:1436:46:1644:-118,0,-103.121	0/1:207:115,91:115:4061:91:3243:-218.49,0,-302.805	0/1:152:39,113:39:1396:113:4043:-305.246,0,-79.7677	0/1:25:10,15:10:352:15:536:-38.5452,0,-24.4516	0/1:85:47,38:47:1647:38:1349:-88.3358,0,-122.389	0/1:53:32,21:32:1139:21:752:-50.8738,0,-86.6102	0/1:25:9,16:9:324:16:576:-43.2063,0,-21.8381	0/1:148:73,75:73:2593:75:2664:-177.307,0,-188.121	0/1:76:38,38:38:1346:38:1350:-90.8133,0,-97.2986	0/1:213:91,122:91:3212:122:4331:-307.676,0,-224.383	0/0:191:190,1:190:6730:1:36:0,-53.994,-601.302	0/1:186:78,108:78:2757:108:3860:-269.171,0,-190.199	0/1:99:54,45:54:1912:45:1616:-106.709,0,-141.676	0/1:2:1,1:1:36:1:36:-2.78554,0,-2.98442	0/0:88:88,0:88:3059:0:0:0,-26.4906,-274.269	0/0:102:102,0:102:3611:0:0:0,-30.7051,-323.475	0/0:157:156,0:156:5523:0:0:0,-46.9607,-495.976	0/0:77:77,0:77:2727:0:0:0,-23.1793,-245.19	0/0:49:49,0:49:1730:0:0:0,-14.7505,-155.661	0/0:51:51,0:51:1799:0:0:0,-15.3525,-161.758	0/0:116:116,0:116:4100:0:0:0,-34.9195,-367.742	0/0:43:43,0:43:1509:0:0:0,-12.9443,-135.398	0/1:65:24,41:24:864:41:1468:-103.303,0,-57.8283	0/0:59:59,0:59:2069:0:0:0,-17.7608,-185.441	0/0:45:45,0:45:1590:0:0:0,-13.5463,-143.074	0/1:92:51,41:51:1819:41:1463:-98.4119,0,-135.891	0/1:47:20,27:20:712:27:953:-68.4961,0,-50.2062	0/0:121:121,0:121:4297:0:0:0,-36.4246,-386.337	0/0:83:83,0:83:2886:0:0:0,-24.9855,-259.53
chr12	4111848	.	TAT	TT,TTT	184991	PASS	AB=0.474234,0.525523;ABP=26.7329,26.2874;AC=145,41;AF=0.77957,0.22043;AN=186;AO=6502,2315;CIGAR=1M1D1M,1M1X1M;DP=8818;DPB=6650.67;DPRA=0,3.32844;EPP=14121.9,5029.97;EPPR=5.18177;GTI=4;LEN=1,1;MEANALT=1.90323,2;MQM=52.1381,59.9909;MQMR=60;NS=93;NUMALT=2;ODDS=0.100319;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=229072,82959;QR=20;RO=1;RPL=15,0;RPP=13991.9,5029.97;RPPR=5.18177;RPR=6487,2315;RUN=1,1;SAF=15,0;SAP=13991.9,5029.97;SAR=6487,2315;SRF=0;SRP=5.18177;SRR=1;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:45:0,19,26:0:0:19,26:668,936:-131.002,-76.7327,-71.0131,-54.6244,0,-46.7976	1/1:139:0,139,0:0:0:139,0:4929,0:-442.864,-41.8432,0,-442.864,-41.8432,-442.864	1/2:177:0,81,96:0:0:81,96:2881,3452:-516.061,-281.992,-257.609,-234.425,0,-205.527	1/1:204:0,198,6:0:0:198,6:6942,216:-622.342,-59.6039,0,-604.717,-41.6196,-602.911	1/2:70:0,47,23:0:0:47,23:1656,828:-201.109,-67.9204,-53.772,-133.545,0,-126.621	1/2:65:0,33,32:0:0:33,32:1157,1152:-188.366,-94.3572,-84.4232,-94.3639,0,-84.731	1/1:179:0,175,4:0:0:175,4:6153,144:-551.09,-52.6803,0,-539.341,-40.5708,-538.136	1/2:128:0,59,69:0:0:59,69:2062,2476:-369.818,-202.322,-184.562,-167.849,0,-147.078	1/1:75:0,70,5:0:0:70,5:2427,180:-217.792,-21.0721,0,-203.104,-6.0256,-201.599	1/1:118:0,116,2:0:0:116,2:4077,68:-365.664,-34.9195,0,-360.148,-29.0638,-359.546	1/1:68:0,67,1:0:0:67,1:2356,36:-211.276,-20.169,0,-208.338,-16.8718,-208.037	1/1:63:0,61,2:0:0:61,2:2168,72:-194.644,-18.3628,0,-188.769,-12.1282,-188.167	1/1:79:0,77,2:0:0:77,2:2723,72:-244.009,-23.1793,0,-238.134,-16.9446,-237.532	1/1:60:0,56,4:0:0:56,4:1957,144:-175.439,-16.8577,0,-163.688,-4.74818,-162.484	1/1:57:0,55,2:0:0:55,2:1960,63:-175.56,-16.5567,0,-170.495,-11.1756,-169.893	1/1:60:0,57,3:0:0:57,3:2040,108:-182.37,-17.1587,0,-173.558,-7.98663,-172.655	1/1:69:0,67,2:0:0:67,2:2396,72:-214.962,-20.169,0,-209.087,-13.9343,-208.485	1/1:52:0,49,3:0:0:49,3:1721,108:-154.452,-14.7505,0,-145.64,-5.57839,-144.736	1/1:47:0,44,3:0:0:44,3:1555,108:-139.639,-13.2453,0,-130.826,-4.07324,-129.923	1/2:200:0,97,103:0:0:97,103:3411,3708:-578.863,-302.914,-273.714,-276.303,0,-245.297	1/2:111:0,49,62:0:0:49,62:1703,2224:-319.95,-181.76,-167.01,-138.542,0,-119.878	1/2:120:0,32,88:0:0:32,88:1132,3144:-347.997,-256.695,-247.062,-91.6542,0,-65.1636	1/1:45:0,44,1:0:0:44,1:1568,36:-140.721,-13.2453,0,-137.783,-9.94808,-137.482	1/2:121:0,109,12:0:0:109,12:3772,432:-340.057,-35.6088,-2.79657,-304.807,0,-301.194	1/1:104:0,101,3:0:0:101,3:3553,108:-318.323,-30.404,0,-309.51,-21.232,-308.607	1/2:189:0,81,108:0:0:81,108:2876,3861:-548.531,-315.173,-290.789,-233.714,0,-201.203	1/1:154:0,149,5:0:0:149,5:5240,180:-469.595,-44.8535,0,-454.907,-29.8066,-453.402	1/1:36:0,33,3:0:0:33,3:1159,108:-103.905,-9.93399,0,-95.0919,-0.76191,-94.1889	1/2:229:0,120,109:0:0:120,109:4201,3904:-658.94,-318.741,-282.618,-340.553,0,-307.74	1/2:138:0,61,77:0:0:61,77:2157,2768:-401.049,-226.178,-207.815,-175.226,0,-152.047	1/1:117:0,113,4:0:0:113,4:3944,144:-353.047,-34.0164,0,-341.297,-21.9069,-340.093	1/2:3:0,1,2:0:0:1,2:36,72:-9.16568,-6.23466,-5.93363,-3.29039,0,-2.68833	2/2:15:0,1,14:0:0:1,14:32,500:-45.014,-42.4406,-42.1396,-4.21442,-1.31888,0	1/1:1:0,1,0:0:0:1,0:36,0:-3.59317,-0.30103,0,-3.59317,-0.30103,-3.59317	1/2:6:0,4,2:0:0:4,2:144,72:-17.9656,-6.23466,-5.03054,-12.0906,0,-11.4886	1/1:5:0,5,0:0:0:5,0:180,0:-16.5286,-1.50515,0,-16.5286,-1.50515,-16.5286	1/2:180:0,84,96:0:0:84,96:2964,3433:-520.415,-280.283,-254.996,-240.486,0,-211.587	1/2:146:0,68,78:0:0:68,78:2373,2789:-419.548,-227.768,-207.298,-192.131,0,-168.651	1/1:69:0,68,1:0:0:68,1:2413,36:-215.707,-20.47,0,-212.769,-17.1728,-212.468	.:.:.:.:.:.:.:.	1/1:165:0,158,7:0:0:158,7:5539,252:-496.64,-47.5627,0,-476.078,-26.641,-473.971	1/1:34:0,34,0:0:0:34,0:1199,0:-107.875,-10.235,0,-107.875,-10.235,-107.875	1/1:170:0,166,4:0:0:166,4:5865,136:-523.947,-49.971,0,-512.916,-38.5996,-511.712	1/1:66:0,64,2:0:0:64,2:2260,68:-202.497,-19.2659,0,-196.981,-13.4103,-196.379	1/2:74:0,34,40:0:0:34,40:1204,1440:-215.16,-117.857,-107.622,-97.659,0,-85.6178	1/2:136:0,69,67:0:0:69,67:2371,2408:-388.694,-196.807,-176.036,-192.238,0,-172.069	1/1:123:0,119,4:0:0:119,4:4209,144:-376.591,-35.8226,0,-364.841,-23.7131,-363.637	1/1:191:0,188,3:0:0:188,3:6662,108:-596.64,-56.5936,0,-587.828,-47.4216,-586.925	1/1:107:0,106,1:0:0:106,1:3728,36:-333.919,-31.9092,0,-330.982,-28.6119,-330.681	1/1:114:0,113,1:0:0:113,1:4001,36:-359.066,-34.0164,0,-356.129,-30.7191,-355.828	1/2:216:0,107,109:0:0:107,109:3746,3908:-621.524,-319.101,-286.89,-302.777,0,-269.964	1/2:5:0,3,2:0:0:3,2:108,72:-15.0219,-6.23466,-5.33157,-9.14675,0,-8.54469	1/1:120:0,117,3:0:0:117,3:4151,104:-372.68,-35.2205,0,-364.227,-26.4208,-363.324	1/1:64:0,63,1:0:0:63,1:2209,36:-198.011,-18.9649,0,-195.074,-15.6676,-194.773	1/1:14:0,14,0:0:0:14,0:492,0:-44.5559,-4.21442,0,-44.5559,-4.21442,-44.5559	1/1:118:0,116,2:0:0:116,2:4101,72:-368.031,-34.9195,0,-362.156,-28.6848,-361.554	1/1:30:0,30,0:0:0:30,0:1041,0:-93.4935,-9.0309,0,-93.4935,-9.0309,-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chr12	4219669	.	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chr12	4705302	.	C	T	94229.9	PASS	AB=0.48273;ABP=9.31043;AC=142;AF=0.771739;AN=184;AO=4409;CIGAR=1X;DP=5684;DPB=5684;DPRA=0;EPP=9550.99;EPPR=2771.64;GTI=3;LEN=1;MEANALT=1;MQM=59.9989;MQMR=60;NS=92;NUMALT=1;ODDS=1.02104;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=157438;QR=45515;RO=1275;RPL=3;RPP=9550.99;RPPR=2771.64;RPR=4406;RUN=1;SAF=4409;SAP=9577.03;SAR=0;SRF=1275;SRP=2771.64;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:5,6:5:180:6:212:-16.1135,0,-13.2407	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:75:43,32:43:1540:32:1152:-81.4129,0,-116.316	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:41:13,28:13:464:28:1004:-78.3336,0,-29.7553	0/1:25:13,12:13:449:12:416:-30.2459,0,-33.2117	1/1:37:0,37:0:0:37:1313:-118.47,-11.1381,0	0/1:111:61,50:61:2180:50:1787:-127.698,0,-163.052	1/1:27:0,27:0:0:27:955:-86.264,-8.12781,0	1/1:72:0,72:0:0:72:2532:-228.128,-21.6742,0	1/1:85:1,84:1:36:84:2999:-266.543,-21.9893,0	1/1:66:0,66:0:0:66:2359:-212.568,-19.868,0	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	1/1:96:2,94:2:72:94:3334:-293.44,-22.0622,0	1/1:50:0,50:0:0:50:1777:-160.211,-15.0515,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:106:0,106:0:0:106:3800:-342.197,-31.9092,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:55:0,55:0:0:55:1946:-175.412,-16.5567,0	0/1:107:51,56:51:1815:56:1995:-147.613,0,-131.42	0/1:79:39,40:39:1391:40:1424:-104.676,0,-101.707	0/1:24:15,9:15:532:9:320:-21.9176,0,-40.9884	1/1:30:0,30:0:0:30:1045:-94.3555,-9.0309,0	0/1:35:4,31:4:140:31:1108:-89.4949,0,-2.40853	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:151:75,76:75:2696:76:2720:-199.588,0,-197.428	1/1:73:0,73:0:0:73:2612:-235.328,-21.9752,0	1/1:38:0,38:0:0:38:1360:-122.701,-11.4391,0	0/1:59:29,30:29:1028:30:1072:-79.0317,0,-75.0723	0/1:60:36,24:36:1292:24:860:-59.66,0,-98.522	1/1:49:0,49:0:0:49:1755:-158.233,-14.7505,0	.:.:.:.:.:.:.:.	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	.:.:.:.:.:.:.:.	0/1:211:120,91:120:4308:91:3257:-229.832,0,-324.378	0/1:57:27,30:27:972:30:1065:-79.0019,0,-70.6392	1/1:73:0,73:0:0:73:2620:-236.047,-21.9752,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:117:0,117:0:0:117:4164:-374.941,-35.2205,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:36:0,36:0:0:36:1260:-113.7,-10.8371,0	1/1:69:0,69:0:0:69:2456:-221.295,-20.7711,0	0/1:65:30,35:30:1072:35:1252:-93.4176,0,-77.2255	0/1:38:25,13:25:896:13:468:-31.0205,0,-69.5212	1/1:97:1,96:1:36:96:3408:-303.338,-25.6016,0	1/1:118:0,118:0:0:118:4212:-379.259,-35.5215,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:71:0,71:0:0:71:2518:-226.871,-21.3731,0	0/1:85:47,38:47:1667:38:1364:-97.4732,0,-124.729	0/1:13:6,7:6:207:7:246:-18.5682,0,-15.0535	1/1:84:0,84:0:0:84:3006:-270.771,-25.2865,0	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:78:0,78:0:0:78:2796:-251.88,-23.4803,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:12:11,1:11:381:1:36:0,-0.0140849,-31.0224	1/1:25:1,24:1:36:24:860:-74.1236,-3.92748,0	0/1:120:64,56:64:2296:56:2000:-144.15,0,-170.777	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:101:0,101:0:0:101:3588:-323.125,-30.404,0	0/1:66:43,23:43:1540:23:820:-54.2545,0,-119.025	0/1:57:7,50:7:252:50:1796:-144.764,0,-5.87025	0/1:55:29,26:29:1028:26:936:-68.0028,0,-76.2764	0/1:72:37,35:37:1316:35:1226:-88.9678,0,-97.0676	0/1:63:37,26:37:1315:26:924:-64.5128,0,-99.6861	0/1:37:22,15:22:784:15:536:-37.4367,0,-59.7458	0/1:37:18,19:18:644:19:684:-50.7522,0,-47.1525	0/1:79:41,38:41:1451:38:1364:-99.2793,0,-107.104	0/1:23:13,10:13:460:10:352:-25.0945,0,-34.8117	0/1:20:8,12:8:288:12:432:-33.2006,0,-20.2468	0/1:80:36,44:36:1283:44:1580:-118.409,0,-91.6902	0/1:87:38,49:38:1368:49:1725:-129.343,0,-97.2312	1/1:125:0,125:0:0:125:4479:-403.278,-37.6288,0	0/1:62:37,25:37:1315:25:887:-61.4843,0,-99.9872	0/1:70:36,34:36:1288:34:1205:-87.6818,0,-95.1515	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:108:0,108:0:0:108:3880:-349.392,-32.5112,0	1/1:44:1,43:1:36:43:1544:-135.653,-9.64705,0	1/1:116:0,116:0:0:116:4164:-374.941,-34.9195,0	1/1:95:0,95:0:0:95:3391:-305.405,-28.5979,0	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	1/1:93:0,93:0:0:93:3316:-298.657,-27.9958,0	1/1:130:0,130:0:0:130:4651:-418.752,-39.1339,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:85:54,31:54:1918:31:1112:-74.8038,0,-147.308	1/1:87:0,87:0:0:87:3120:-281.026,-26.1896,0	1/1:40:0,40:0:0:40:1421:-128.186,-12.0412,0	0/1:75:44,31:44:1575:31:1108:-77.4537,0,-119.464	0/1:69:45,24:45:1608:24:864:-57.3115,0,-124.239	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:136:0,136:0:0:136:4876:-438.992,-40.9401,0
chr12	4891052	.	T	C	83217	PASS	AB=0.448416;ABP=54.088;AC=148;AF=0.787234;AN=188;AO=3921;CIGAR=1X;DP=5146;DPB=5146;DPRA=55.3226;EPP=8491.32;EPPR=2564.04;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9936;MQMR=59.991;NS=94;NUMALT=1;ODDS=0.494015;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139540;QR=43752;RO=1223;RPL=3918;RPP=8491.32;RPPR=2521.56;RPR=3;RUN=1;SAF=3921;SAP=8517.35;SAR=0;SRF=1198;SRP=2446.01;SRR=25;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:23,11:23:828:11:396:-25.7477,0,-64.6091	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:110:60,50:60:2134:50:1784:-127.729,0,-159.214	1/1:172:0,172:0:0:172:6151:-553.689,-51.7772,0	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	0/1:14:9,5:9:315:5:180:-12.3376,0,-24.4728	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	0/1:50:27,23:27:968:23:820:-59.071,0,-72.3859	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:84:0,84:0:0:84:2999:-270.142,-25.2865,0	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	1/1:98:0,98:0:0:98:3430:-308.912,-29.5009,0	1/1:77:0,77:0:0:77:2734:-246.303,-23.1793,0	1/1:40:0,40:0:0:40:1414:-127.556,-12.0412,0	1/1:64:0,64:0:0:64:2277:-205.191,-19.2659,0	1/1:68:0,68:0:0:68:2411:-217.245,-20.47,0	1/1:37:0,37:0:0:37:1323:-119.371,-11.1381,0	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	1/1:34:0,34:0:0:34:1211:-109.296,-10.235,0	0/1:30:20,10:20:720:10:360:-23.7134,0,-56.0979	0/1:76:33,43:33:1171:43:1544:-116.375,0,-82.8102	0/1:19:11,8:11:392:8:288:-20.5478,0,-29.9005	1/1:47:1,46:1:36:46:1638:-144.109,-10.5501,0	1/1:28:2,26:2:72:26:932:-77.3621,-1.59212,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:115:65,50:65:2336:50:1792:-126.944,0,-175.881	1/1:96:0,96:0:0:96:3436:-309.453,-28.8989,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:96:54,42:54:1932:42:1491:-105.584,0,-145.256	0/1:54:29,25:29:1031:25:900:-65.0654,0,-76.847	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:9:8,1:8:273:1:36:-0.889005,0,-22.1909	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:214:102,111:102:3629:111:3903:-286.985,0,-262.336	0/1:45:32,13:32:1148:13:464:-28.5512,0,-90.0835	1/1:46:0,46:0:0:46:1629:-146.897,-13.8474,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:56:0,56:0:0:56:1983:-178.742,-16.8577,0	1/1:41:0,41:0:0:41:1450:-130.794,-12.3422,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:48:0,48:0:0:48:1715:-154.635,-14.4494,0	0/1:56:28,28:28:1004:28:982:-71.8331,0,-73.8182	0/1:60:41,19:41:1468:19:665:-42.111,0,-114.354	1/1:52:0,52:0:0:52:1834:-165.339,-15.6536,0	1/1:101:0,101:0:0:101:3559:-320.519,-30.404,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:109:0,109:0:0:109:3894:-350.653,-32.8123,0	0/1:32:7,25:7:252:25:900:-71.6881,0,-13.396	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:126:0,126:0:0:126:4491:-404.36,-37.9298,0	1/1:27:0,26:0:0:26:918:-82.5757,-7.82678,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:15:11,4:11:396:4:144:-8.79817,0,-31.4673	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	0/1:91:52,39:52:1868:39:1383:-97.3743,0,-141.006	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	1/1:180:0,180:0:0:180:6413:-577.258,-54.1854,0	0/1:93:57,36:57:2044:36:1279:-87.4167,0,-156.236	1/1:27:1,26:1:36:26:932:-80.6006,-4.52954,0	0/1:53:30,23:30:1080:23:824:-58.5287,0,-81.5587	0/1:60:36,24:36:1292:24:860:-59.66,0,-98.522	0/1:63:43,20:43:1548:20:702:-44.5376,0,-120.648	0/1:43:17,26:17:608:26:932:-71.2546,0,-42.1077	0/1:33:15,18:15:536:18:644:-48.3566,0,-38.6408	0/1:26:14,12:14:500:12:432:-31.3944,0,-37.5094	0/1:10:5,5:5:180:5:169:-12.5312,0,-13.5418	0/1:93:63,30:63:2260:30:1072:-68.7967,0,-175.667	0/1:158:63,95:63:2241:95:3365:-255.493,0,-154.389	0/1:53:31,22:31:1112:22:788:-55.2902,0,-84.4368	1/1:63:0,63:0:0:63:2247:-202.493,-18.9649,0	0/1:30:18,12:18:640:12:432:-30.1903,0,-48.8984	0/1:83:40,43:40:1436:43:1512:-111.385,0,-104.552	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	1/1:58:0,58:0:0:58:2054:-185.13,-17.4597,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:104:0,104:0:0:104:3678:-331.224,-31.3071,0	1/1:59:0,59:0:0:59:2079:-187.378,-17.7608,0	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	1/1:38:0,38:0:0:38:1336:-120.537,-11.4391,0	1/1:106:0,106:0:0:106:3784:-340.758,-31.9092,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:60:27,33:27:968:33:1161:-86.7329,0,-69.3756	1/1:57:0,57:0:0:57:2027:-182.701,-17.1587,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:108:69,39:69:2472:39:1385:-92.4356,0,-190.223	0/1:72:46,26:46:1638:26:919:-61.3512,0,-126.033	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:113:0,113:0:0:113:4029:-362.797,-34.0164,0
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chr12	5621917	.	A	G	102752	PASS	AB=0.422283;ABP=175.821;AC=146;AF=0.784946;AN=186;AO=4879;CIGAR=1X;DP=6795;DPB=6795;DPRA=0;EPP=10476.4;EPPR=4124.54;GTI=3;LEN=1;MEANALT=1.02151;MQM=59.5229;MQMR=56.686;NS=93;NUMALT=1;ODDS=2.10372;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=174395;QR=68524;RO=1914;RPL=4865;RPP=10476.4;RPPR=4133.19;RPR=14;RUN=1;SAF=0;SAP=10597.6;SAR=4879;SRF=1;SRP=4150.53;SRR=1913;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:19,15:19:680:15:532:-37.9781,0,-51.1912	1/1:93:1,92:1:36:92:3290:-292.651,-24.3985,0	0/1:46:24,22:24:864:22:774:-56.1256,0,-64.1489	1/1:153:0,153:0:0:153:5485:-493.769,-46.0576,0	0/1:62:38,24:38:1360:24:864:-59.4055,0,-103.843	0/1:70:35,35:35:1245:35:1252:-91.8753,0,-91.0842	1/1:74:0,74:0:0:74:2648:-238.517,-22.2762,0	0/1:115:55,60:55:1980:60:2144:-158.609,0,-142.912	1/1:58:0,58:0:0:58:2084:-187.751,-17.4597,0	1/1:59:0,59:0:0:59:2111:-190.167,-17.7608,0	1/1:64:0,64:0:0:64:2300:-207.105,-19.2659,0	1/1:57:0,57:0:0:57:2044:-184.182,-17.1587,0	1/1:52:0,52:0:0:52:1856:-167.292,-15.6536,0	1/1:75:0,75:0:0:75:2684:-241.776,-22.5773,0	1/1:51:0,51:0:0:51:1836:-165.51,-15.3525,0	1/1:43:0,43:0:0:43:1548:-139.571,-12.9443,0	1/1:51:0,51:0:0:51:1826:-164.612,-15.3525,0	1/1:53:0,53:0:0:53:1904:-171.621,-15.9546,0	1/1:58:0,57:0:0:57:2044:-183.851,-17.1587,0	0/1:202:109,93:109:3907:93:3340:-239.977,0,-290.112	0/1:80:49,31:49:1741:31:1105:-75.6651,0,-132.477	0/1:84:51,33:51:1832:33:1167:-79.9926,0,-139.558	1/1:33:0,33:0:0:33:1168:-105.134,-9.93399,0	1/1:67:6,61:6:216:61:2177:-176.568,-0.585831,0	1/1:66:1,65:1:36:65:2330:-205.725,-16.2697,0	0/1:245:157,88:157:5628:88:3141:-209.151,0,-432.409	1/1:153:0,152:0:0:152:5389:-483.788,-45.7566,0	1/1:35:0,35:0:0:35:1260:-113.63,-10.5361,0	0/1:208:158,50:158:5668:50:1764:-96.4255,0,-447.366	0/1:136:84,52:84:2978:52:1864:-127.086,0,-226.398	1/1:98:1,97:1:36:97:3463:-308.264,-25.9027,0	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39245	0/1:14:3,11:3:108:11:387:-30.9515,0,-5.85596	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	.:.:.:.:.:.:.:.	1/1:13:0,13:0:0:13:459:-41.6441,-3.91339,0	0/1:191:103,88:103:3681:88:3145:-225.765,0,-273.684	0/1:125:62,63:62:2215:63:2256:-165.657,0,-160.304	1/1:75:0,75:0:0:75:2680:-241.419,-22.5773,0	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.1242	1/1:124:0,124:0:0:124:4407:-396.787,-37.3277,0	1/1:44:0,44:0:0:44:1584:-142.785,-13.2453,0	1/1:86:1,85:1:36:85:3040:-270.272,-22.3401,0	1/1:60:0,60:0:0:60:2156:-194.13,-18.0618,0	0/1:58:24,34:24:864:34:1224:-93.005,0,-60.5454	0/1:63:32,31:32:1144:31:1103:-80.6136,0,-84.1781	1/1:88:0,88:0:0:88:3123:-280.682,-26.4906,0	1/1:117:0,117:0:0:117:4181:-376.415,-35.2205,0	1/1:56:0,56:0:0:56:1999:-180.142,-16.8577,0	1/1:80:0,80:0:0:80:2868:-258.347,-24.0824,0	0/1:119:69,50:69:2480:50:1771:-123.846,0,-187.535	1/1:6:0,6:0:0:6:216:-19.7881,-1.80618,0	1/1:69:0,69:0:0:69:2464:-222.006,-20.7711,0	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:15:7,8:7:233:8:273:-20.3846,0,-16.7635	1/1:96:0,96:0:0:96:3429:-308.782,-28.8989,0	1/1:21:0,21:0:0:21:756:-68.3602,-6.32163,0	0/1:9:2,7:2:72:7:237:-18.9306,0,-4.06745	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0761	1/1:49:0,49:0:0:49:1755:-158.098,-14.7505,0	0/1:150:68,82:68:2444:82:2936:-219.224,0,-174.747	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:115:0,115:0:0:115:4122:-371.161,-34.6185,0	0/1:153:106,47:106:3797:47:1676:-105.067,0,-294.585	1/1:56:0,56:0:0:56:1999:-179.961,-16.8577,0	0/1:56:39,17:39:1404:17:608:-38.1943,0,-109.522	0/1:68:37,31:37:1328:31:1108:-79.4713,0,-99.2946	0/1:107:80,27:80:2864:27:968:-55.1362,0,-225.345	0/1:20:7,13:7:252:13:464:-36.0769,0,-16.9956	0/1:57:36,21:36:1281:21:743:-50.0327,0,-98.2378	0/1:65:38,27:38:1364:27:964:-67.3177,0,-103.346	0/1:14:8,6:8:288:6:216:-15.5737,0,-22.0376	0/1:117:52,65:52:1845:65:2312:-173.064,0,-131.001	0/1:41:25,16:25:900:16:576:-39.8246,0,-68.9346	0/1:85:42,43:42:1496:43:1540:-113.087,0,-109.179	1/1:68:1,67:1:36:67:2400:-212.643,-16.8722,0	0/1:138:82,56:82:2944:56:1997:-138.437,0,-223.17	0/1:99:67,32:67:2412:32:1140:-73.1072,0,-186.915	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.31946	1/1:87:0,87:0:0:87:3115:-280.419,-26.1896,0	1/1:36:0,36:0:0:36:1296:-116.903,-10.8371,0	1/1:141:0,141:0:0:141:5034:-453.188,-42.4452,0	1/1:82:0,82:0:0:82:2948:-265.533,-24.6845,0	1/1:46:0,46:0:0:46:1640:-147.889,-13.8474,0	1/1:75:0,75:0:0:75:2681:-241.513,-22.5773,0	1/1:108:0,108:0:0:108:3876:-349.024,-32.5112,0	1/1:29:0,29:0:0:29:1040:-93.9044,-8.72987,0	0/1:69:37,32:37:1324:32:1144:-82.4489,0,-98.4576	1/1:53:0,53:0:0:53:1897:-170.519,-15.9546,0	1/1:48:0,48:0:0:48:1698:-153.1,-14.4494,0	0/1:89:43,46:43:1544:46:1648:-121.683,0,-112.091	0/1:61:44,17:44:1569:17:612:-37.0472,0,-122.743	1/1:43:0,43:0:0:43:1535:-138.433,-12.9443,0	1/1:78:0,78:0:0:78:2795:-251.701,-23.4803,0
chr12	5645129	.	T	C	105248	PASS	AB=0.443847;ABP=99.826;AC=146;AF=0.784946;AN=186;AO=5056;CIGAR=1X;DP=7035;DPB=7035;DPRA=0;EPP=10982;EPPR=4289.5;GTI=4;LEN=1;MEANALT=1.01075;MQM=59.9945;MQMR=59.997;NS=93;NUMALT=1;ODDS=0.900853;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180545;QR=70556;RO=1978;RPL=5056;RPP=10982;RPPR=4298.18;RPR=0;RUN=1;SAF=0;SAP=10982;SAR=5056;SRF=1;SRP=4289.5;SRR=1977;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:10,26:10:360:26:928:-73.0012,0,-21.9072	1/1:193:0,193:0:0:193:6902:-621.245,-58.0988,0	0/1:100:48,52:48:1716:52:1868:-138.296,0,-124.623	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	0/1:46:23,23:23:805:23:828:-60.9967,0,-58.9201	0/1:56:35,21:35:1256:21:752:-51.1486,0,-96.4876	1/1:60:0,60:0:0:60:2133:-192.236,-18.0618,0	0/1:160:90,70:90:3209:70:2500:-177.088,0,-240.867	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:56:0,56:0:0:56:1985:-178.923,-16.8577,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	1/1:53:0,53:0:0:53:1898:-171.098,-15.9546,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:86:0,86:0:0:86:3076:-277.069,-25.8886,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:57:0,57:0:0:57:2037:-183.6,-17.1587,0	1/1:46:0,46:0:0:46:1648:-148.609,-13.8474,0	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	0/1:105:69,36:69:2457:36:1281:-83.9831,0,-189.775	0/1:101:53,48:53:1885:48:1724:-125.041,0,-139.523	0/1:76:62,14:62:2228:14:500:-22.457,0,-177.906	1/1:68:1,67:1:36:67:2396:-212.299,-16.8718,0	1/1:149:8,141:8:288:141:5048:-428.198,-18.5861,0	1/1:50:0,50:0:0:50:1769:-159.491,-15.0515,0	0/1:220:130,90:130:4623:90:3221:-223.884,0,-350.004	1/1:131:0,131:0:0:131:4700:-423.151,-39.4349,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:139:79,60:79:2809:60:2122:-149.402,0,-211.206	0/1:264:81,183:81:2877:183:6508:-506.33,0,-179.694	1/1:84:0,84:0:0:84:2965:-267.081,-25.2865,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:3:0,3:0:0:3:93:-8.67673,-0.90309,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:211:108,103:108:3861:103:3684:-268.246,0,-284.167	0/1:218:120,98:120:4268:98:3524:-251.744,0,-318.672	1/1:66:0,66:0:0:66:2338:-210.676,-19.868,0	.:.:.:.:.:.:.:.	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	1/1:122:0,122:0:0:122:4361:-392.663,-36.7257,0	1/1:71:0,71:0:0:71:2524:-227.411,-21.3731,0	0/1:47:28,19:28:989:19:676:-46.9331,0,-75.1736	0/1:73:60,13:60:2156:13:468:-20.4845,0,-172.332	1/1:65:0,65:0:0:65:2320:-209.061,-19.567,0	1/1:146:0,146:0:0:146:5164:-464.9,-43.9504,0	1/1:82:0,82:0:0:82:2944:-265.193,-24.6845,0	1/1:91:0,91:0:0:91:3276:-295.059,-27.3937,0	0/1:95:50,45:50:1796:45:1601:-115.78,0,-133.324	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:14:7,7:7:252:7:244:-18.085,0,-18.8145	1/1:67:0,67:0:0:67:2359:-212.564,-20.169,0	1/1:26:2,24:2:72:24:864:-71.2458,-0.990058,0	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:64:0,64:0:0:64:2292:-206.541,-19.2659,0	0/1:94:52,42:52:1864:42:1496:-106.638,0,-139.743	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:107:0,107:0:0:107:3836:-345.436,-32.2102,0	0/1:186:120,66:120:4293:66:2356:-156.307,0,-330.554	1/1:68:2,66:2:72:66:2361:-205.91,-13.6333,0	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6107	0/1:129:80,49:80:2861:49:1729:-117.06,0,-218.893	0/1:85:49,36:49:1734:36:1283:-90.1857,0,-130.753	0/1:21:8,13:8:273:13:468:-36.138,0,-18.5786	0/1:70:41,28:41:1464:28:1008:-69.9055,0,-110.925	0/1:89:49,40:49:1760:40:1436:-102.746,0,-131.892	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:119:72,47:72:2557:47:1667:-114.493,0,-194.557	0/1:82:53,29:53:1892:29:1032:-68.509,0,-145.874	0/1:172:109,63:109:3897:63:2264:-152.245,0,-299.145	1/1:91:0,91:0:0:91:3241:-291.911,-27.3937,0	0/1:114:55,59:55:1938:59:2097:-154.681,0,-140.375	0/1:89:39,50:39:1400:50:1788:-134.411,0,-99.5075	0/1:8:4,4:4:129:4:144:-10.9054,0,-9.51942	1/1:69:0,69:0:0:69:2464:-222.014,-20.7711,0	1/1:60:0,60:0:0:60:2129:-191.877,-18.0618,0	1/1:67:0,67:0:0:67:2381:-214.546,-20.169,0	1/1:113:0,113:0:0:113:4025:-362.438,-34.0164,0	1/1:41:0,41:0:0:41:1461:-131.784,-12.3422,0	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	1/1:140:0,140:0:0:140:4986:-448.887,-42.1442,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:63:35,28:35:1243:28:1008:-72.0715,0,-93.209	1/1:78:0,78:0:0:78:2775:-249.991,-23.4803,0	1/1:42:0,42:0:0:42:1504:-135.655,-12.6433,0	0/1:96:56,40:56:2004:40:1432:-100.279,0,-151.735	0/1:62:41,21:41:1472:21:741:-48.3486,0,-114.112	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0
chr12	6342110	.	A	G	308834	PASS	AB=0.517023;ABP=18.5359;AC=146;AF=0.776596;AN=188;AO=11349;CIGAR=1X;DP=14349;DPB=14349;DPRA=0;EPP=24266.4;EPPR=6506.57;GTI=2;LEN=1;MEANALT=1.05319;MQM=59.6878;MQMR=59.981;NS=94;NUMALT=1;ODDS=2.17963;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=401670;QR=106085;RO=2995;RPL=5749;RPP=7.25815;RPPR=32.3023;RPR=5600;RUN=1;SAF=5705;SAP=3.72226;SAR=5644;SRF=1397;SRP=32.3023;SRR=1598;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:88:37,51:37:1299:51:1816:-137.223,0,-90.7198	1/1:187:0,187:0:0:187:6663:-599.726,-56.2926,0	0/1:218:104,114:104:3690:114:4027:-296.988,0,-266.68	1/1:285:0,285:0:0:285:10093:-907.962,-85.7936,0	0/1:102:46,55:46:1652:55:1921:-142.371,0,-118.187	0/1:42:23,19:23:802:19:675:-48.4255,0,-59.8542	1/1:145:0,145:0:0:145:5152:-463.803,-43.6494,0	0/1:249:126,123:126:4458:123:4327:-314.597,0,-326.436	1/1:177:0,177:0:0:177:6239:-561.134,-53.2823,0	1/1:180:0,180:0:0:180:6325:-569.25,-54.1854,0	1/1:132:0,132:0:0:132:4640:-417.763,-39.736,0	1/1:151:2,149:2:72:149:5207:-461.731,-38.6188,0	1/1:162:0,162:0:0:162:5663:-509.755,-48.7669,0	1/1:154:0,154:0:0:154:5385:-484.728,-46.3586,0	1/1:120:0,120:0:0:120:4228:-380.694,-36.1236,0	1/1:123:0,123:0:0:123:4334:-390.229,-37.0267,0	1/1:123:0,123:0:0:123:4375:-393.911,-37.0267,0	1/1:85:0,85:0:0:85:3004:-270.48,-25.5876,0	1/1:103:0,103:0:0:103:3653:-328.785,-31.0061,0	0/1:266:107,159:107:3789:159:5655:-428.675,0,-261.136	0/1:225:111,114:111:3916:114:3972:-289.864,0,-284.904	0/1:113:62,51:62:2212:51:1806:-128.8,0,-165.329	1/1:200:0,200:0:0:200:7076:-636.521,-60.206,0	0/1:178:18,160:18:633:160:5677:-457.398,0,-3.71172	1/1:108:1,106:1:32:106:3763:-335.645,-29.3508,0	0/1:385:189,196:189:6695:196:7019:-515.176,0,-486.733	1/1:408:0,408:0:0:408:14508:-1305.42,-122.82,0	1/1:64:0,64:0:0:64:2277:-205.169,-19.2659,0	0/1:373:185,188:185:6612:188:6647:-486.022,0,-482.877	0/1:178:66,112:66:2341:112:3980:-304.633,0,-157.365	1/1:283:3,280:3:108:280:9962:-886.042,-75.1163,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:19:12,7:12:424:7:252:-17.3094,0,-32.7768	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:26:0,26:0:0:26:922:-83.2921,-7.82678,0	0/1:338:168,170:168:5939:170:6052:-442.937,0,-432.876	0/1:164:91,73:91:3218:73:2582:-183.253,0,-240.473	1/1:124:0,124:0:0:124:4379:-394.119,-37.3277,0	0/1:2:1,1:1:36:1:36:-2.90064,0,-2.99621	1/1:209:0,209:0:0:209:7331:-659.667,-62.9153,0	1/1:115:0,115:0:0:115:4094:-368.632,-34.6185,0	1/1:199:0,199:0:0:199:7041:-633.134,-59.905,0	1/1:152:0,152:0:0:152:5405:-486.487,-45.7566,0	0/1:124:51,72:51:1820:72:2556:-192.899,0,-126.694	0/1:141:59,82:59:2095:82:2910:-219.685,0,-146.374	1/1:157:0,157:0:0:157:5594:-503.54,-47.2617,0	1/1:180:0,180:0:0:180:6376:-573.918,-54.1854,0	1/1:165:0,165:0:0:165:5826:-524,-49.67,0	1/1:182:2,180:2:68:180:6403:-569.559,-48.3298,0	0/1:262:136,126:136:4819:126:4465:-323.105,0,-354.997	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:286:0,286:0:0:286:10177:-915.394,-86.0946,0	1/1:84:0,84:0:0:84:2993:-269.575,-25.2865,0	0/1:18:9,9:9:320:9:324:-24.0767,0,-23.7238	1/1:206:0,205:0:0:205:7293:-656.044,-61.7112,0	1/1:89:0,89:0:0:89:3138:-282.633,-26.7917,0	0/1:19:5,14:5:176:14:487:-38.4305,0,-10.4654	0/1:19:12,7:12:428:7:248:-16.9437,0,-33.1392	1/1:128:0,128:0:0:128:4550:-409.66,-38.5318,0	0/1:205:101,104:101:3599:104:3636:-265.723,0,-262.32	1/1:13:0,13:0:0:13:453:-41.0972,-3.91339,0	1/1:288:0,288:0:0:288:10193:-916.841,-86.6966,0	0/1:179:100,79:100:3563:79:2806:-198.888,0,-266.994	1/1:87:1,86:1:36:86:3027:-268.676,-22.5913,0	0/1:139:79,60:79:2795:60:2137:-150.752,0,-209.927	0/1:179:83,96:83:2964:96:3423:-254.4,0,-213.109	0/1:177:104,73:104:3667:73:2612:-182.043,0,-276.956	0/1:91:31,60:31:1096:60:2134:-164.789,0,-71.5562	0/1:97:51,46:51:1782:46:1620:-116.86,0,-131.461	0/1:135:64,71:64:2288:71:2512:-185.261,0,-165.543	0/1:27:9,18:9:320:18:617:-47.7184,0,-21.0145	0/1:181:91,90:91:3176:90:3157:-229.855,0,-231.582	0/1:125:70,55:70:2476:55:1933:-136.606,0,-185.464	0/1:266:151,115:151:5330:115:4047:-284.318,0,-399.765	1/1:241:0,241:0:0:241:8585:-772.648,-72.5482,0	0/1:151:78,73:78:2748:73:2607:-189.386,0,-202.107	0/1:183:97,86:97:3450:86:3062:-220.701,0,-255.625	0/1:27:10,17:10:360:17:608:-46.9242,0,-24.6165	1/1:202:1,201:1:36:201:7154:-640.024,-57.2098,0	1/1:145:0,145:0:0:145:5111:-459.67,-43.6494,0	1/1:324:2,322:2:63:322:11447:-1023.09,-91.5506,0	1/1:148:1,147:1:36:147:5169:-461.754,-40.9542,0	1/1:148:0,148:0:0:148:5211:-469.041,-44.5524,0	1/1:153:0,153:0:0:153:5345:-481.085,-46.0576,0	1/1:254:0,253:0:0:253:8902:-800.753,-76.1606,0	1/1:61:0,61:0:0:61:2166:-195.175,-18.3628,0	0/1:144:64,80:64:2241:80:2818:-210.489,0,-158.605	1/1:138:0,138:0:0:138:4899:-440.956,-41.5421,0	1/1:107:0,107:0:0:107:3792:-341.463,-32.2102,0	0/1:213:97,116:97:3429:116:4109:-305.868,0,-244.706	0/1:116:76,40:76:2688:40:1410:-92.2693,0,-207.247	1/1:165:0,165:0:0:165:5854:-526.456,-49.67,0	1/1:207:5,202:5:180:202:7071:-619.797,-45.7611,0
chr12	6342120	.	AGAA	GGAG,GGAA	155945	PASS	AB=0.480589,0.511714;ABP=12.7892,6.57128;AC=145,37;AF=0.796703,0.203297;AN=182;AO=5704,1548;CIGAR=1X2M1X,1X3M;DP=7304;DPB=7443.5;DPRA=0,1.16991;EPP=11788.5,3321.16;EPPR=5.18177;GTI=0;LEN=4,1;MEANALT=1.97802,2.5;MQM=59.3687,59.9748;MQMR=60;NS=91;NUMALT=2;ODDS=2.03285;PAIRED=0,0;PAIREDR=0;PAO=279,279;PQA=9866,9866;PQR=0;PRO=0;QA=199107,54330;QR=36;RO=1;RPL=70,5;RPP=11788.5,3321.16;RPPR=5.18177;RPR=5634,1543;RUN=1,1;SAF=0,0;SAP=12389.1,3364.45;SAR=5704,1548;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,15,9:0:0:15,9:529,315:-69.05,-25.978,-21.4625,-43.4229,0,-40.7136	1/1:53:0,53,0:0:0:53,0:1849,0:-166.665,-15.9546,0,-166.665,-15.9546,-166.665	1/2:52:0,27,25:0:0:27,25:949,879:-149.138,-71.901,-63.7732,-77.5886,0,-70.0628	1/1:176:0,175,0:0:0:175,0:6145,0:-552.626,-52.6803,0,-552.626,-52.6803,-552.626	1/2:58:0,28,30:0:0:28,30:988,1050:-166.224,-85.7769,-77.348,-80.7987,0,-71.7678	1/2:25:0,13,12:0:0:13,12:465,432:-73.5185,-35.6088,-31.6954,-38.2684,0,-34.656	1/1:92:0,91,0:0:0:91,0:3220,0:-289.618,-27.3937,0,-289.618,-27.3937,-289.618	1/2:142:0,68,74:0:0:68,74:2351,2607:-403.592,-212.599,-192.128,-191.342,0,-169.066	1/1:85:0,84,0:0:0:84,0:2886,0:-259.436,-25.2865,0,-259.436,-25.2865,-259.436	1/1:105:0,105,0:0:0:105,0:3598,0:-323.992,-31.6082,0,-323.992,-31.6082,-323.992	1/1:64:0,62,0:0:0:62,0:2196,0:-197.561,-18.6639,0,-197.561,-18.6639,-197.561	1/1:68:0,68,0:0:0:68,0:2293,0:-206.437,-20.47,0,-206.437,-20.47,-206.437	1/1:70:0,70,0:0:0:70,0:2461,0:-221.702,-21.0721,0,-221.702,-21.0721,-221.702	1/1:88:0,86,0:0:0:86,0:2998,0:-269.748,-25.8886,0,-269.748,-25.8886,-269.748	1/1:63:0,63,0:0:0:63,0:2235,0:-201.404,-18.9649,0,-201.404,-18.9649,-201.404	1/1:44:0,44,0:0:0:44,0:1510,0:-136.177,-13.2453,0,-136.177,-13.2453,-136.177	1/1:90:0,89,1:0:0:89,1:3095,21:-278.555,-26.7917,0,-276.968,-24.9928,-276.666	1/1:60:0,59,0:0:0:59,0:2051,0:-184.438,-17.7608,0,-184.438,-17.7608,-184.438	1/1:52:0,51,0:0:0:51,0:1777,0:-159.717,-15.3525,0,-159.717,-15.3525,-159.717	1/2:156:0,88,67:0:0:88,67:3088,2353:-442.486,-191.5,-165.009,-250.977,0,-230.808	1/2:79:0,41,36:0:0:41,36:1433,1283:-221.082,-104.656,-92.3141,-116.498,0,-105.661	1/2:48:0,19,29:0:0:19,29:663,1009:-134.13,-80.2393,-74.5197,-52.1605,0,-43.4306	1/1:108:0,107,0:0:0:107,0:3734,0:-335.692,-32.2102,0,-335.692,-32.2102,-335.692	1/1:104:0,96,8:0:0:96,8:3375,284:-303.569,-28.8989,0,-280.428,-5.40377,-278.02	1/1:34:0,34,0:0:0:34,0:1195,0:-107.85,-10.235,0,-107.85,-10.235,-107.85	1/2:260:0,120,137:0:0:120,137:4207,4830:-733.988,-392.193,-356.07,-340.733,0,-299.492	1/1:164:0,161,0:0:0:161,0:5670,0:-510.077,-48.4658,0,-510.077,-48.4658,-510.077	1/1:36:0,36,0:0:0:36,0:1269,0:-114.49,-10.8371,0,-114.49,-10.8371,-114.49	1/2:172:0,54,118:0:0:54,118:1884,4178:-487.023,-333.822,-317.566,-146.778,0,-111.256	1/2:86:0,50,35:0:0:50,35:1745,1221:-241.297,-99.3934,-84.3419,-141.99,0,-131.454	1/1:221:0,219,2:0:0:219,2:7667,72:-689.519,-65.9256,0,-683.644,-59.6909,-683.042	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:6:0,4,2:0:0:4,2:143,72:-17.893,-6.23466,-5.03054,-12.0173,0,-11.4153	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:6:0,6,0:0:0:6,0:215,0:-19.6852,-1.80618,0,-19.6852,-1.80618,-19.6852	1/2:188:0,92,92:0:0:92,92:3234,3199:-521.738,-258.605,-230.91,-261.681,0,-233.987	1/2:101:1,40,59:1:36:40,59:1389,2098:-280.637,-168.03,-158.927,-109.962,0,-95.1384	1/1:68:0,65,0:0:0:65,0:2239,0:-201.105,-19.567,0,-201.105,-19.567,-201.105	1/1:1:0,1,0:0:0:1,0:30,0:-2.97345,-0.30103,0,-2.97345,-0.30103,-2.97345	1/1:129:0,129,0:0:0:129,0:4496,0:-404.712,-38.8329,0,-404.712,-38.8329,-404.712	1/1:49:0,49,0:0:0:49,0:1737,0:-156.598,-14.7505,0,-156.598,-14.7505,-156.598	1/1:82:0,82,0:0:0:82,0:2860,0:-256.968,-24.6845,0,-256.968,-24.6845,-256.968	1/1:104:0,104,0:0:0:104,0:3641,0:-327.803,-31.3071,0,-327.803,-31.3071,-327.803	1/2:80:0,39,39:0:0:39,39:1383,1381:-225.264,-112.592,-100.851,-112.77,0,-101.029	1/2:58:0,37,21:0:0:37,21:1295,736:-163.588,-58.2921,-47.154,-103.717,0,-97.3954	1/1:86:0,86,0:0:0:86,0:2977,0:-268.115,-25.8886,0,-268.115,-25.8886,-268.115	1/1:90:0,90,0:0:0:90,0:3155,0:-284.166,-27.0927,0,-284.166,-27.0927,-284.166	1/1:72:0,70,0:0:0:70,0:2415,0:-217.196,-21.0721,0,-217.196,-21.0721,-217.196	1/1:92:0,92,0:0:0:92,0:3228,0:-290.636,-27.6948,0,-290.636,-27.6948,-290.636	1/2:116:0,64,51:0:0:64,51:2217,1796:-321.651,-141.547,-122.281,-175.464,0,-160.112	.:.:.:.:.:.:.:.	1/1:92:0,92,0:0:0:92,0:3193,0:-287.392,-27.6948,0,-287.392,-27.6948,-287.392	1/1:40:0,40,0:0:0:40,0:1382,0:-123.305,-12.0412,0,-123.305,-12.0412,-123.305	1/2:18:0,9,9:0:0:9,9:322,320:-52.6815,-26.4331,-23.7238,-26.6049,0,-23.8956	1/1:99:0,99,0:0:0:99,0:3479,0:-313.312,-29.802,0,-313.312,-29.802,-313.312	1/1:42:0,39,0:0:0:39,0:1320,0:-118.795,-11.7402,0,-118.795,-11.7402,-118.795	1/2:7:0,5,2:0:0:5,2:165,72:-19.1327,-6.02402,-4.51887,-13.2731,0,-12.671	1/2:13:0,3,10:0:0:3,10:101,360:-37.8566,-29.6798,-28.7767,-8.47992,0,-5.46962	1/1:65:0,65,0:0:0:65,0:2314,0:-208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chr12	7031307	.	T	C	100808	PASS	AB=0.617071;ABP=258.243;AC=149;AF=0.792553;AN=188;AO=4713;CIGAR=1X;DP=5548;DPB=5548;DPRA=11.9204;EPP=10237.2;EPPR=1807.5;GTI=5;LEN=1;MEANALT=1.04301;MQM=56.6747;MQMR=59.9278;NS=94;NUMALT=1;ODDS=0.30888;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=167454;QR=29214;RO=831;RPL=0;RPP=10237.2;RPPR=1807.5;RPR=4713;RUN=1;SAF=0;SAP=10237.2;SAR=4713;SRF=0;SRP=1807.5;SRR=831;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:1,10:1:36:10:352:-28.6624,0,-0.286945	1/1:54:0,54:0:0:54:1910:-171.554,-16.2556,0	0/1:46:13,33:13:455:33:1160:-90.6297,0,-27.4346	1/1:147:0,147:0:0:147:5229:-470.231,-44.2514,0	0/1:21:5,16:5:180:16:559:-44.287,0,-10.2304	1/1:20:1,19:1:32:19:672:-57.4414,-2.82129,0	1/1:89:0,89:0:0:89:3200:-287.851,-26.7917,0	0/1:89:28,61:28:988:61:2140:-165.801,0,-62.4341	1/1:51:0,51:0:0:51:1803:-162.013,-15.3525,0	1/1:94:0,94:0:0:94:3348:-301.106,-28.2968,0	1/1:34:0,34:0:0:34:1194:-107.427,-10.235,0	1/1:49:0,49:0:0:49:1716:-154.506,-14.7505,0	1/1:52:0,52:0:0:52:1834:-164.827,-15.6536,0	1/1:50:0,50:0:0:50:1788:-160.951,-15.0515,0	1/1:51:0,51:0:0:51:1828:-164.474,-15.3525,0	1/1:30:0,30:0:0:30:1072:-96.2169,-9.0309,0	1/1:48:0,48:0:0:48:1712:-154.136,-14.4494,0	1/1:47:0,47:0:0:47:1684:-151.633,-14.1484,0	1/1:22:0,22:0:0:22:779:-69.9675,-6.62266,0	0/1:77:26,51:26:890:51:1808:-139.312,0,-57.2292	0/1:66:32,34:32:1123:34:1216:-89.568,0,-80.881	0/1:17:9,8:9:324:8:284:-20.7812,0,-24.3883	1/1:62:0,62:0:0:62:2209:-198.989,-18.6639,0	1/1:79:1,78:1:36:78:2751:-243.576,-20.1831,0	1/1:37:0,37:0:0:37:1324:-119.279,-11.1381,0	0/1:179:74,105:74:2592:105:3717:-279.466,0,-179.644	1/1:124:0,124:0:0:124:4436:-398.679,-37.3277,0	1/1:30:0,30:0:0:30:1025:-92.4322,-9.0309,0	0/1:107:38,69:38:1318:69:2476:-190.786,0,-86.7077	0/1:88:37,51:37:1320:51:1813:-136.435,0,-92.6113	1/1:74:0,74:0:0:74:2623:-236.148,-22.2762,0	0/1:4:2,2:2:68:2:68:-5.25131,0,-5.25359	0/1:14:5,9:5:167:9:324:-25.2774,0,-11.144	1/1:9:0,9:0:0:9:324:-29.44,-2.70927,0	0/1:9:5,4:5:176:4:144:-10.5855,0,-13.4757	1/1:8:0,8:0:0:8:288:-26.0426,-2.40824,0	0/1:147:68,79:68:2373:79:2835:-211.065,0,-169.577	0/1:110:34,75:34:1183:75:2658:-205.91,0,-73.599	1/1:35:0,35:0:0:35:1243:-112.023,-10.5361,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:109:0,109:0:0:109:3878:-348.911,-32.8123,0	1/1:20:0,20:0:0:20:707:-63.9119,-6.0206,0	1/1:91:0,91:0:0:91:3238:-291.218,-27.3937,0	1/1:50:0,50:0:0:50:1762:-158.457,-15.0515,0	0/1:33:24,9:24:856:9:311:-18.3867,0,-67.4271	0/1:62:10,52:10:348:52:1847:-147.686,0,-12.9913	1/1:58:0,58:0:0:58:2076:-186.821,-17.4597,0	1/1:123:0,123:0:0:123:4384:-393.122,-37.0267,0	1/1:74:0,73:0:0:73:2601:-233.919,-21.9752,0	1/1:115:0,115:0:0:115:4030:-362.076,-34.6185,0	0/1:82:18,64:18:631:64:2284:-181.091,0,-32.4312	1/1:4:0,4:0:0:4:144:-13.312,-1.20412,0	1/1:98:0,98:0:0:98:3486:-313.386,-29.5009,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:4:1,3:1:36:3:104:-8.48725,0,-2.39415	1/1:78:0,78:0:0:78:2792:-251.312,-23.4803,0	1/1:8:0,8:0:0:8:288:-26.263,-2.40824,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:3,6:3:100:6:216:-17.0812,0,-6.62117	1/1:61:0,61:0:0:61:2179:-196.17,-18.3628,0	0/1:83:38,45:38:1343:45:1600:-119.028,0,-96.1839	1/1:1:0,1:0:0:1:36:-3.59783,-0.30103,0	1/1:157:0,157:0:0:157:5580:-502.015,-47.2617,0	0/1:127:43,84:43:1529:84:2989:-230.962,0,-99.6703	1/1:54:0,54:0:0:54:1920:-172.597,-16.2556,0	0/1:33:5,28:5:172:28:996:-79.838,0,-5.88398	0/1:91:23,68:23:820:68:2400:-188.782,0,-46.7288	0/1:25:11,14:11:388:14:504:-38.1667,0,-27.7316	0/1:12:4,8:4:144:8:288:-22.3848,0,-9.70126	0/1:27:9,18:9:316:18:640:-49.5377,0,-20.651	0/1:103:57,46:57:2035:46:1648:-117.327,0,-152.415	0/1:24:13,11:13:456:11:381:-27.3876,0,-34.1485	0/1:59:26,33:26:891:33:1176:-88.2478,0,-62.7412	0/1:43:20,23:20:696:23:812:-60.3616,0,-50.0181	0/1:64:15,49:15:524:49:1756:-138.214,0,-28.2237	1/1:83:0,83:0:0:83:2964:-266.955,-24.9855,0	1/1:61:2,59:2:72:59:2102:-181.831,-11.5261,0	0/1:90:35,55:35:1231:55:1938:-147.103,0,-84.0005	0/1:12:3,9:3:108:9:320:-25.4874,0,-6.46281	1/1:72:0,72:0:0:72:2584:-232.297,-21.6742,0	1/1:77:0,77:0:0:77:2743:-246.214,-23.1793,0	1/1:162:0,162:0:0:162:5751:-517.253,-48.7669,0	1/1:79:0,79:0:0:79:2794:-251.3,-23.7814,0	1/1:30:0,30:0:0:30:1046:-94.4363,-9.0309,0	1/1:63:0,62:0:0:62:2203:-198.043,-18.6639,0	1/1:107:1,106:1:36:106:3731:-332.198,-28.6119,0	1/1:36:0,36:0:0:36:1283:-115.618,-10.8371,0	0/1:58:22,36:22:779:36:1280:-97.1062,0,-52.9723	1/1:39:1,38:1:27:38:1351:-118.839,-9.04039,0	1/1:24:0,24:0:0:24:860:-77.6826,-7.22472,0	0/1:70:32,38:32:1140:38:1293:-95.1385,0,-81.8289	0/1:48:31,17:31:1095:17:608:-40.4647,0,-84.4097	1/1:89:0,88:0:0:88:3148:-283.037,-26.4906,0	1/1:53:0,53:0:0:53:1884:-169.76,-15.9546,0
chr12	7080024	.	A	T	14675.4	PASS	AB=0.497204;ABP=3.13175;AC=44;AF=0.236559;AN=186;AO=897;CIGAR=1X;DP=3725;DPB=3725;DPRA=1.13056;EPP=1942.14;EPPR=6020.76;GTI=2;LEN=1;MEANALT=1;MQM=59.7592;MQMR=59.9692;NS=93;NUMALT=1;ODDS=1.15;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31869;QR=101429;RO=2827;RPL=1;RPP=1942.14;RPPR=6020.76;RPR=896;RUN=1;SAF=0;SAP=1950.82;SAR=897;SRF=0;SRP=6141.76;SRR=2827;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:22:11,11:11:396:11:396:-29.3601,0,-29.3601	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:89:35,54:35:1256:54:1906:-145.013,0,-86.5536	0/0:49:49,0:49:1749:0:0:0,-14.7505,-157.692	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/1:28:12,16:12:432:16:557:-42.0267,0,-30.7924	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.105	0/1:44:21,23:21:756:23:828:-61.5703,0,-55.1219	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.469	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:44:20,24:20:720:24:849:-63.4825,0,-51.8835	0/1:89:49,40:49:1764:40:1417:-101.034,0,-132.252	0/1:38:10,28:10:360:28:1004:-79.2367,0,-21.3052	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/1:21:18,3:18:648:3:104:-3.38118,0,-52.3303	0/0:22:22,0:22:777:0:0:0,-6.62266,-70.2504	0/1:147:95,52:95:3401:52:1846:-122.127,0,-262.051	0/0:92:92,0:92:3284:0:0:0,-27.6948,-295.78	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:90:35,55:35:1256:55:1961:-149.659,0,-86.2517	0/1:54:34,20:34:1224:20:708:-47.7894,0,-94.2114	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:113:55,58:55:1980:58:2088:-154.133,0,-144.458	0/1:45:12,33:12:432:33:1154:-90.6159,0,-25.6744	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	1/1:1:0,1:0:0:1:31:-3.09945,-0.30103,0	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:35:20,15:20:720:15:532:-37.677,0,-54.5927	0/1:42:16,26:16:572:26:932:-71.5556,0,-39.1702	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.075	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:99:99,0:99:3549:0:0:0,-29.802,-319.616	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	.:.:.:.:.:.:.:.	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:82:37,45:37:1323:45:1597:-119.326,0,-94.6869	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.452	0/1:89:44,45:44:1569:45:1608:-118.2,0,-114.708	0/1:31:28,3:28:1008:3:104:-0.368453,0,-81.7044	0/1:51:31,20:31:1112:20:716:-49.4024,0,-84.9406	0/1:57:30,27:30:1071:27:953:-68.9246,0,-79.5414	0/1:44:26,18:26:924:18:644:-45.0453,0,-70.2323	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	0/1:31:18,13:18:648:13:468:-33.1277,0,-49.32	0/1:4:3,1:3:108:1:36:-2.3873,0,-8.87105	0/1:60:25,35:25:900:35:1244:-94.2023,0,-63.2592	0/1:32:10,22:10:356:22:777:-60.6174,0,-22.7483	0/1:65:28,37:28:1000:37:1290:-96.8299,0,-70.7484	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/1:38:22,16:22:792:16:572:-40.3734,0,-60.1665	0/1:56:36,20:36:1296:20:686:-45.1981,0,-100.086	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.873	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:35:18,17:18:644:17:612:-44.8774,0,-47.7545	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:56:25,31:25:885:31:1112:-83.5052,0,-63.1088	0/1:53:24,29:24:845:29:1021:-76.2395,0,-60.4116	0/0:55:54,0:54:1940:0:0:0,-16.2556,-174.516	0/0:49:49,0:49:1752:0:0:0,-14.7505,-157.964
chr12	7080123	.	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chr12	7080143	.	C	T	199763	PASS	AB=0.512734;ABP=10.9185;AC=146;AF=0.776596;AN=188;AO=9235;CIGAR=1X;DP=11992;DPB=11992;DPRA=0;EPP=19538.8;EPPR=5742.51;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9388;MQMR=59.9557;NS=94;NUMALT=1;ODDS=3.82874;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=331057;QR=97960;RO=2754;RPL=59;RPP=19547.4;RPPR=5742.51;RPR=9176;RUN=1;SAF=1;SAP=20047.9;SAR=9234;SRF=0;SRP=5983.25;SRR=2754;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:9,18:9:315:18:648:-50.5241,0,-20.5594	1/1:187:2,185:2:72:185:6634:-590.232,-49.4559,0	0/1:204:94,110:94:3348:110:3940:-293.38,0,-240.128	1/1:247:0,247:0:0:247:8841:-795.539,-74.3544,0	0/1:152:83,69:83:2963:69:2475:-177.246,0,-221.146	0/1:89:54,35:54:1912:35:1256:-86.5536,0,-145.566	1/1:240:0,240:0:0:240:8548:-769.319,-72.2472,0	0/1:179:72,107:72:2559:107:3827:-290.717,0,-176.676	1/1:183:1,182:1:36:182:6532:-584.363,-51.4902,0	1/1:94:0,94:0:0:94:3368:-303.336,-28.2968,0	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:85:0,85:0:0:85:3047:-274.454,-25.5876,0	1/1:57:0,57:0:0:57:2029:-182.881,-17.1587,0	1/1:70:0,70:0:0:70:2503:-225.52,-21.0721,0	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	1/1:95:0,95:0:0:95:3407:-306.844,-28.5979,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:343:150,193:150:5336:193:6924:-519.97,0,-377.121	0/1:220:86,134:86:3068:134:4816:-367.366,0,-210.123	0/1:223:154,69:154:5492:69:2472:-155.604,0,-427.277	1/1:101:0,101:0:0:101:3636:-327.443,-30.404,0	1/1:76:6,70:6:216:70:2499:-205.367,-3.08777,0	1/1:113:0,112:0:0:112:4011:-360.814,-33.7154,0	0/1:413:205,207:205:7275:207:7420:-543.443,0,-530.423	1/1:301:0,301:0:0:301:10800:-971.894,-90.61,0	1/1:58:0,58:0:0:58:2080:-187.47,-17.4597,0	0/1:420:215,205:215:7600:205:7354:-535.474,0,-557.614	0/1:150:62,88:62:2220:88:3141:-237.76,0,-154.91	1/1:156:1,155:1:36:155:5556:-496.558,-43.3624,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:25:16,9:16:572:9:320:-21.6166,0,-44.2877	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:275:130,145:130:4591:145:5195:-384.905,0,-330.57	0/1:209:102,107:102:3631:107:3836:-282.382,0,-262.977	1/1:69:0,69:0:0:69:2451:-220.842,-20.7711,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:214:0,214:0:0:214:7688:-691.944,-64.4204,0	1/1:48:1,47:1:36:47:1669:-146.897,-10.8512,0	1/1:162:0,162:0:0:162:5824:-524.27,-48.7669,0	1/1:104:1,103:1:36:103:3691:-328.793,-27.7088,0	0/1:80:38,42:38:1348:42:1512:-112.292,0,-97.5011	0/1:139:56,82:56:1996:82:2948:-223.73,0,-138.091	1/1:176:0,176:0:0:176:6323:-569.155,-52.9813,0	1/1:251:2,249:2:72:249:8909:-794.722,-68.7218,0	1/1:196:0,196:0:0:196:6977:-627.981,-59.0019,0	1/1:153:1,152:1:32:152:5442:-486.663,-42.8583,0	0/1:209:99,110:99:3552:110:3956:-293.314,0,-256.972	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:206:1,205:1:32:205:7368:-659.947,-58.8129,0	1/1:73:0,73:0:0:73:2609:-235.056,-21.9752,0	0/1:25:12,13:12:424:13:468:-34.9339,0,-30.9674	1/1:171:0,171:0:0:171:6122:-551.064,-51.4761,0	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/1:30:13,17:13:464:17:612:-46.3825,0,-33.0666	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/1:117:58,59:58:2051:59:2122:-156.028,0,-149.638	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:276:0,276:0:0:276:9904:-891.246,-83.0843,0	0/1:264:144,120:144:5129:120:4304:-307.967,0,-381.655	0/1:69:10,59:10:360:59:2112:-169.578,0,-11.9732	0/1:134:58,76:58:2063:76:2717:-204.116,0,-145.603	0/1:253:127,126:127:4519:126:4497:-328.737,0,-330.562	0/1:105:80,25:80:2850:25:900:-49.7129,0,-225.128	0/1:24:14,10:14:496:10:351:-24.702,0,-37.7495	0/1:123:69,54:69:2450:54:1923:-136.318,0,-183.728	0/1:115:47,68:47:1671:68:2440:-185.236,0,-116.058	0/1:26:9,17:9:324:17:612:-47.5867,0,-21.6791	0/1:101:45,56:45:1577:56:2016:-151.309,0,-111.814	0/1:83:36,47:36:1296:47:1677:-126.222,0,-91.9584	0/1:211:105,106:105:3737:106:3793:-278.049,0,-273.013	1/1:279:0,279:0:0:279:10006:-900.469,-83.9874,0	0/1:161:76,85:76:2715:85:3060:-227.154,0,-196.127	0/1:92:39,53:39:1396:53:1892:-142.864,0,-98.2443	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:169:0,169:0:0:169:6059:-545.41,-50.8741,0	1/1:142:1,141:1:36:141:5056:-451.56,-39.148,0	1/1:218:1,217:1:36:217:7790:-697.529,-62.0263,0	1/1:123:0,123:0:0:123:4428:-398.687,-37.0267,0	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	1/1:81:0,81:0:0:81:2909:-262.044,-24.3834,0	1/1:176:2,174:2:72:174:6264:-557.013,-46.1446,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:107:48,59:48:1690:59:2124:-159.218,0,-120.175	1/1:94:0,94:0:0:94:3384:-304.774,-28.2968,0	1/1:41:0,41:0:0:41:1476:-133.136,-12.3422,0	0/1:90:32,58:32:1139:58:2080:-160.378,0,-75.7257	0/1:82:65,17:65:2327:17:612:-30.729,0,-185.005	1/1:148:0,148:0:0:148:5311:-478.122,-44.5524,0	1/1:142:0,142:0:0:142:5078:-457.163,-42.7463,0
chr12	7080145	.	A	G	47373.2	PASS	AB=0.489865;ABP=8.02816;AC=42;AF=0.223404;AN=188;AO=2772;CIGAR=1X;DP=11989;DPB=11989;DPRA=1.22566;EPP=5781.58;EPPR=19251.6;GTI=0;LEN=1;MEANALT=1.11321;MQM=59.9553;MQMR=59.9468;NS=94;NUMALT=1;ODDS=3.15591;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98838;QR=329939;RO=9209;RPL=2744;RPP=5781.58;RPPR=19243;RPR=28;RUN=1;SAF=0;SAP=6022.33;SAR=2772;SRF=1;SRP=19991.4;SRR=9208;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:18,9:18:640:9:320:-21.0145,0,-49.8015	0/0:185:184,0:184:6588:0:0:0,-55.3895,-592.714	0/1:200:106,93:106:3787:93:3332:-239.922,0,-280.853	0/0:247:247,0:247:8793:0:0:0,-74.3544,-791.168	0/1:153:69,84:69:2484:84:3004:-224.534,0,-177.755	0/1:90:36,54:36:1288:54:1927:-146.613,0,-89.1309	0/0:238:238,0:238:8547:0:0:0,-71.6451,-769.223	0/1:183:107,76:107:3818:76:2690:-187.257,0,-288.696	0/0:182:181,1:181:6464:1:36:0,-51.1892,-578.247	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.768	0/0:77:77,0:77:2768:0:0:0,-23.1793,-249.361	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.189	0/0:54:54,0:54:1926:0:0:0,-16.2556,-173.611	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.965	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:343:194,149:194:6931:149:5295:-373.435,0,-520.601	0/1:223:135,88:135:4844:88:3129:-214.706,0,-368.983	0/1:224:70,154:70:2505:154:5477:-425.627,0,-158.27	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.606	0/0:76:70,6:70:2497:6:216:0,-3.08777,-205.186	0/0:112:112,0:112:3989:0:0:0,-33.7154,-359.195	0/1:417:210,207:210:7536:207:7399:-540.428,0,-552.731	0/0:305:305,0:305:10934:0:0:0,-91.8141,-983.932	0/0:57:57,0:57:2037:0:0:0,-17.1587,-183.6	0/1:419:204,215:204:7300:215:7683:-565.374,0,-530.917	0/1:152:86,65:86:3087:65:2323:-163.662,0,-232.389	0/0:155:154,1:154:5514:1:36:0,-43.0614,-492.786	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:26:9,16:9:324:16:576:-44.2894,0,-21.6203	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:274:142,132:142:5104:132:4700:-340.678,0,-377.018	0/1:207:105,101:105:3755:101:3592:-260.906,0,-275.748	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.497	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:215:215,0:215:7711:0:0:0,-64.7214,-694.016	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:164:164,0:164:5872:0:0:0,-49.3689,-528.591	0/0:104:103,0:103:3691:0:0:0,-31.0061,-332.111	0/1:82:44,38:44:1584:38:1358:-97.8233,0,-118.167	0/1:141:83,58:83:2969:58:2059:-143.135,0,-224.996	0/0:179:179,0:179:6428:0:0:0,-53.8844,-578.591	0/0:253:252,1:252:9043:1:36:0,-72.5623,-809.408	0/0:198:198,0:198:7116:0:0:0,-59.6039,-640.409	0/0:151:150,1:150:5380:1:36:0,-41.8573,-480.732	0/1:207:107,100:107:3839:100:3563:-258.566,0,-283.392	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:207:206,1:206:7387:1:36:0,-58.7149,-661.259	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.925	0/1:25:13,12:13:464:12:424:-30.9688,0,-34.5718	0/0:172:172,0:172:6145:0:0:0,-51.7772,-553.135	0/0:66:66,0:66:2350:0:0:0,-19.868,-211.758	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	0/1:29:17,12:17:608:12:415:-28.9504,0,-46.3222	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:116:57,59:57:2052:59:2114:-155.609,0,-150.032	0/0:12:12,0:12:423:0:0:0,-3.61236,-38.4051	0/0:275:275,0:275:9852:0:0:0,-82.7832,-886.571	0/1:264:120,144:120:4303:144:5125:-381.816,0,-307.882	0/1:68:58,10:58:2084:10:356:-11.9112,0,-167.36	0/1:135:77,58:77:2760:58:2055:-144.581,0,-206.899	0/1:247:122,125:122:4380:125:4471:-328.048,0,-320.015	0/1:105:26,79:26:936:79:2800:-220.629,0,-52.9513	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	0/1:125:53,71:53:1908:71:2552:-192.371,0,-134.438	0/1:115:67,48:67:2408:48:1711:-119.657,0,-182.358	0/1:25:16,9:16:572:9:324:-21.9801,0,-44.2877	0/1:103:55,47:55:1980:47:1675:-119.972,0,-147.41	0/1:83:46,37:46:1647:37:1312:-93.3962,0,-123.524	0/1:216:106,110:106:3799:110:3924:-288.329,0,-277.084	0/0:280:280,0:280:10011:0:0:0,-84.2884,-900.924	0/1:160:85,75:85:3056:75:2674:-192.74,0,-227.095	0/1:89:52,37:52:1872:37:1328:-93.0306,0,-141.967	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:168:168,0:168:6022:0:0:0,-50.573,-542.077	0/0:140:139,1:139:4996:1:36:0,-38.5459,-446.162	0/0:219:218,1:218:7780:1:36:0,-62.3273,-696.63	0/0:123:122,1:122:4353:1:36:0,-33.4284,-388.343	0/0:87:87,0:87:3123:0:0:0,-26.1896,-281.295	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.716	0/0:176:174,2:174:6239:2:72:0,-46.1446,-554.767	0/0:44:43,1:43:1544:1:36:0,-9.64704,-135.655	0/1:109:60,49:60:2156:49:1748:-124.792,0,-161.495	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.784	0/1:88:56,32:56:2012:32:1140:-76.4186,0,-154.862	0/1:83:18,65:18:648:65:2319:-183.984,0,-33.6664	0/0:153:153,0:153:5500:0:0:0,-46.0576,-495.119	0/0:139:139,0:139:4957:0:0:0,-41.8432,-446.28
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chr12	7245065	.	A	T	31794.2	PASS	AB=0.327698;ABP=1879;AC=88;AF=0.468085;AN=188;AO=2420;CIGAR=1X;DP=7737;DPB=7737;DPRA=8.55222;EPP=5257.97;EPPR=11546.6;GTI=15;LEN=1;MEANALT=1.01111;MQM=59.9785;MQMR=59.9812;NS=94;NUMALT=1;ODDS=0.424248;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86209;QR=190056;RO=5316;RPL=0;RPP=5257.97;RPPR=11546.6;RPR=2420;RUN=1;SAF=2420;SAP=5257.97;SAR=0;SRF=5316;SRP=11546.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:58:53,5:53:1908:5:172:0,-1.64177,-156.18	0/1:63:33,30:33:1188:30:1045:-75.3929,0,-88.2637	0/1:110:99,11:99:3526:11:381:-1.50733,0,-284.434	0/1:126:78,48:78:2796:48:1728:-117.876,0,-213.95	0/1:57:46,11:46:1644:11:392:-18.4613,0,-131.09	0/1:35:28,7:28:1004:7:248:-12.1281,0,-80.1398	0/1:86:48,38:48:1724:38:1364:-97.1721,0,-129.557	0/1:153:136,17:136:4823:17:608:-8.99443,0,-388.159	0/1:90:56,34:56:2016:34:1220:-82.8239,0,-154.62	0/1:95:43,52:43:1525:52:1852:-138.362,0,-108.943	0/1:47:21,26:21:756:26:920:-68.9686,0,-54.2188	0/1:102:53,49:53:1908:49:1752:-127.259,0,-141.292	0/1:73:40,33:40:1432:33:1143:-81.196,0,-107.202	0/1:62:28,34:28:1008:34:1219:-91.353,0,-72.3725	0/1:78:37,41:37:1332:41:1464:-108.576,0,-96.702	0/1:51:28,23:28:1008:23:794:-56.4208,0,-75.6838	0/1:38:20,18:20:686:18:624:-45.0423,0,-50.6166	0/1:35:18,17:18:644:17:608:-44.516,0,-47.7545	0/1:23:12,11:12:432:11:392:-28.6964,0,-32.2975	0/1:118:98,20:98:3486:20:716:-29.2462,0,-278.428	0/1:125:96,29:96:3440:29:1036:-55.9252,0,-272.184	0/0:105:99,6:99:3491:6:212:0,-12.1834,-294.888	0/1:55:37,18:37:1320:18:648:-42.0952,0,-102.545	0/1:80:55,25:55:1972:25:888:-56.1566,0,-153.672	0/1:32:22,10:22:792:10:360:-23.1113,0,-61.9727	0/1:254:211,43:211:7512:43:1536:-62.0715,0,-599.658	0/1:202:110,92:110:3933:92:3236:-230.65,0,-293.353	0/1:42:22,20:22:792:20:719:-52.3953,0,-58.9624	0/1:116:89,27:89:3188:27:960:-51.7968,0,-252.224	0/1:140:116,24:116:4153:24:860:-35.573,0,-331.807	0/1:87:56,31:56:2012:31:1108:-73.8414,0,-155.163	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:12:6,6:6:216:6:212:-15.8124,0,-16.1782	0/1:243:180,63:180:6464:63:2253:-129.882,0,-508.693	0/1:171:143,28:143:5121:28:992:-38.116,0,-409.554	0/1:53:22,31:22:788:31:1112:-84.4286,0,-55.282	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:92:50,42:50:1796:42:1477:-105.528,0,-134.228	0/1:26:15,11:15:536:11:396:-28.156,0,-40.748	0/1:82:51,31:51:1820:31:1092:-73.9051,0,-139.397	0/1:58:33,25:33:1180:25:892:-63.1399,0,-89.0483	0/1:66:59,7:59:2120:7:248:-2.79621,0,-171.201	0/1:103:87,16:87:3094:16:576:-21.1689,0,-247.679	0/1:99:60,39:60:2148:39:1400:-96.4972,0,-163.786	0/1:167:104,63:104:3701:63:2244:-151.952,0,-283.02	0/1:88:57,31:57:2029:31:1112:-73.9007,0,-156.39	0/1:91:33,58:33:1188:58:2076:-159.717,0,-79.8349	0/1:167:138,29:138:4929:29:1024:-42.2006,0,-393.488	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/1:94:56,38:56:2016:38:1356:-94.0437,0,-153.416	0/1:41:24,17:24:860:17:607:-42.6195,0,-65.3796	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:86:47,39:47:1684:39:1385:-99.0583,0,-125.958	0/1:29:15,14:15:540:14:500:-36.6063,0,-40.2067	0/1:24:19,5:19:684:5:180:-9.32734,0,-54.6656	0/1:25:21,4:21:737:4:144:-5.78787,0,-59.1249	0/1:53:25,28:25:885:28:1000:-74.3608,0,-64.0119	0/1:112:90,22:90:3240:22:788:-37.5294,0,-258.105	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:194:103,91:103:3677:91:3268:-235.94,0,-272.732	0/0:198:180,18:180:6430:18:648:0,-0.952056,-520.133	0/1:44:20,24:20:720:24:864:-64.8372,0,-51.8835	0/0:58:54,4:54:1909:4:144:0,-4.14612,-158.767	0/1:152:124,28:124:4444:28:992:-43.8378,0,-354.374	0/1:156:135,20:135:4818:20:712:-17.3874,0,-386.753	0/1:32:25,7:25:896:7:237:-12.0261,0,-71.3274	0/1:71:60,11:60:2156:11:396:-14.6096,0,-172.934	0/1:88:71,17:71:2544:17:612:-28.9228,0,-202.72	0/1:18:13,5:13:468:5:180:-11.1335,0,-37.0411	0/1:142:114,28:114:4054:28:1000:-47.5609,0,-322.096	0/1:83:63,20:63:2264:20:720:-40.1433,0,-179.037	0/1:104:75,29:75:2700:29:1036:-62.2468,0,-211.936	0/1:106:55,51:55:1980:51:1817:-131.9,0,-146.565	0/1:95:72,23:72:2531:23:827:-46.1562,0,-199.44	0/1:102:83,19:83:2965:19:676:-30.4629,0,-236.377	0/1:10:9,1:9:309:1:36:-0.587975,0,-25.1304	0/1:75:38,37:38:1368:37:1305:-95.1722,0,-100.844	0/1:70:41,29:41:1476:29:1010:-70.1349,0,-112.064	0/1:144:76,68:76:2709:68:2429:-175.516,0,-200.704	0/1:103:60,43:60:2156:43:1532:-107.167,0,-163.287	0/1:70:52,18:52:1834:18:648:-37.5798,0,-144.265	0/1:40:22,18:22:788:18:648:-46.6107,0,-59.2036	0/1:136:79,57:79:2836:57:2036:-142.572,0,-214.524	0/1:25:12,13:12:428:13:468:-34.9339,0,-31.3331	0/1:82:65,17:65:2336:17:600:-29.6447,0,-185.815	0/1:75:42,33:42:1512:33:1180:-83.9226,0,-113.797	0/1:43:15,28:15:540:28:977:-75.2963,0,-35.9922	0/1:92:70,22:70:2520:22:792:-43.9109,0,-199.356	0/1:85:75,10:75:2692:10:352:-6.43064,0,-216.937	0/1:165:89,76:89:3153:76:2708:-194.295,0,-234.326	0/1:103:51,52:51:1832:52:1872:-137.753,0,-134.155
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chr12	7514519	.	G	C	21348.2	PASS	AB=0.428843;ABP=142.075;AC=40;AF=0.212766;AN=188;AO=1369;CIGAR=1X;DP=8224;DPB=8224;DPRA=0.910167;EPP=2958.41;EPPR=14710.9;GTI=6;LEN=1;MEANALT=1.04167;MQM=59.9664;MQMR=59.6772;NS=94;NUMALT=1;ODDS=0.906809;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48870;QR=244123;RO=6853;RPL=2;RPP=2958.41;RPPR=14710.9;RPR=1367;RUN=1;SAF=0;SAP=2975.76;SAR=1369;SRF=0;SRP=14884.1;SRR=6853;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:14,7:14:500:7:237:-15.3374,0,-39.0145	0/0:77:77,0:77:2751:0:0:0,-23.1793,-247.805	0/1:91:55,36:55:1963:36:1274:-87.5678,0,-149.535	0/0:168:168,0:168:5964:0:0:0,-50.573,-536.861	0/1:23:16,7:16:576:7:252:-16.1053,0,-45.2513	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/0:147:147,0:147:5260:0:0:0,-44.2514,-473.511	0/1:104:56,48:56:2008:48:1716:-123.418,0,-149.675	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.589	0/0:82:82,0:82:2939:0:0:0,-24.6845,-264.728	0/0:98:98,0:98:3478:0:0:0,-29.5009,-313.132	0/0:101:101,0:101:3585:0:0:0,-30.404,-321.878	0/0:80:80,0:80:2851:0:0:0,-24.0824,-256.777	0/0:157:157,0:157:5596:0:0:0,-47.2617,-503.081	0/0:83:83,0:83:2940:0:0:0,-24.9855,-264.821	0/0:69:69,0:69:2430:0:0:0,-20.7711,-218.307	0/0:134:134,0:134:4753:0:0:0,-40.338,-427.858	0/0:89:89,0:89:3166:0:0:0,-26.7917,-285.134	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.038	0/1:92:56,36:56:2004:36:1288:-88.5288,0,-152.929	0/1:105:58,47:58:2050:47:1672:-119.159,0,-153.149	0/1:54:25,29:25:892:29:1032:-76.9373,0,-64.3441	0/1:47:40,6:40:1436:6:203:-4.39623,0,-115.33	0/0:61:58,3:58:2063:3:108:0,-8.28766,-175.852	0/0:63:63,0:63:2251:0:0:0,-18.9649,-202.848	0/1:257:144,113:144:5116:113:4043:-286.693,0,-383.206	0/0:186:186,0:186:6622:0:0:0,-55.9916,-595.9	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.172	0/1:179:109,70:109:3882:70:2520:-173.167,0,-295.688	0/1:101:59,42:59:2099:42:1504:-105.242,0,-158.748	0/0:98:97,1:97:3454:1:36:0,-25.9027,-307.474	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/0:17:16,1:16:568:1:36:0,-1.51923,-47.8503	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:221:124,97:124:4445:97:3467:-245.714,0,-333.674	0/1:126:80,46:80:2858:46:1614:-107.616,0,-219.519	0/0:118:118,0:118:4200:0:0:0,-35.5215,-377.97	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:114:114,0:114:4083:0:0:0,-34.3174,-365.899	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:103:103,0:103:3666:0:0:0,-31.0061,-330.128	0/0:122:122,0:122:4358:0:0:0,-36.7257,-392.381	0/1:82:43,39:43:1516:39:1396:-101.246,0,-112.041	0/1:90:57,33:57:2027:33:1184:-79.7756,0,-155.236	0/0:73:73,0:73:2594:0:0:0,-21.9752,-233.698	0/0:185:185,0:185:6614:0:0:0,-55.6905,-595.21	0/0:102:102,0:102:3624:0:0:0,-30.7051,-326.353	0/0:170:170,0:170:6077:0:0:0,-51.1751,-546.99	0/1:90:40,50:40:1423:50:1788:-134.092,0,-101.273	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.1802	0/0:140:140,0:140:5003:0:0:0,-42.1442,-450.385	0/0:57:57,0:57:2035:0:0:0,-17.1587,-183.354	0/1:15:11,4:11:377:4:144:-8.79817,0,-29.7422	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.38	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.113	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:5:3,2:3:99:2:68:-4.95256,0,-7.73143	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.331	0/1:139:86,53:86:3056:53:1895:-128.984,0,-232.766	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:168:166,2:166:5921:2:72:0,-43.7363,-526.157	0/1:145:75,70:75:2675:70:2508:-182.323,0,-197.334	0/0:68:66,2:66:2368:2:63:0,-14.4869,-207.39	0/1:46:25,21:25:888:21:752:-54.1589,0,-66.387	0/1:129:85,44:85:3007:44:1575:-103.208,0,-232.021	0/1:63:12,51:12:432:51:1821:-145.204,0,-20.2563	0/1:55:28,27:28:981:27:963:-70.4293,0,-72.0442	0/1:52:40,11:40:1423:11:396:-20.2704,0,-112.651	0/1:100:64,36:64:2296:36:1288:-86.1206,0,-176.794	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	0/1:40:12,28:12:428:28:1004:-78.6347,0,-26.8176	0/1:64:31,33:31:1108:33:1184:-87.6024,0,-80.7569	0/1:134:84,50:84:3004:50:1784:-120.505,0,-230.246	0/0:168:168,0:168:6008:0:0:0,-50.573,-540.713	0/1:56:44,12:44:1568:12:420:-21.2763,0,-124.546	0/1:79:45,34:45:1599:34:1216:-85.9652,0,-120.382	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:96:95,1:95:3412:1:36:0,-25.3006,-303.675	0/0:95:95,0:95:3360:0:0:0,-28.5978,-302.544	0/0:204:203,1:203:7221:1:36:0,-57.8118,-646.235	0/0:120:120,0:120:4263:0:0:0,-36.1236,-383.843	0/0:117:117,0:117:4172:0:0:0,-35.2205,-375.153	0/0:98:98,0:98:3482:0:0:0,-29.5009,-313.546	0/0:147:147,0:147:5182:0:0:0,-44.2514,-466.369	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.125	0/1:88:45,43:45:1564:43:1527:-111.187,0,-114.525	0/0:92:92,0:92:3281:0:0:0,-27.6948,-295.48	0/0:94:94,0:94:3308:0:0:0,-28.2968,-297.914	0/1:134:76,58:76:2708:58:2080:-147.132,0,-203.587	0/1:85:35,50:35:1247:50:1772:-134.171,0,-86.9372	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.666	0/0:132:130,2:130:4621:2:72:0,-32.8992,-409.198
chr12	7514537	.	C	T	149315	PASS	AB=0.572366;ABP=148.523;AC=148;AF=0.787234;AN=188;AO=6896;CIGAR=1X;DP=8279;DPB=8279;DPRA=0;EPP=14977.5;EPPR=3006.16;GTI=6;LEN=1;MEANALT=1;MQM=59.6602;MQMR=59.9667;NS=94;NUMALT=1;ODDS=0.697631;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=246855;QR=49474;RO=1383;RPL=6896;RPP=14977.5;RPPR=3006.16;RPR=0;RUN=1;SAF=0;SAP=14977.5;SAR=6896;SRF=0;SRP=3006.16;SRR=1383;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:8,15:8:288:15:540:-41.8825,0,-19.3437	1/1:78:0,78:0:0:78:2785:-250.862,-23.4803,0	0/1:93:36,57:36:1292:57:2040:-155.86,0,-88.588	1/1:167:0,167:0:0:167:5953:-535.873,-50.272,0	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/1:18:12,6:12:428:6:212:-14.0063,0,-33.4403	1/1:146:0,146:0:0:146:5236:-471.342,-43.9504,0	0/1:104:47,57:47:1676:57:2044:-152.913,0,-119.82	1/1:64:0,64:0:0:64:2292:-206.517,-19.2659,0	1/1:82:0,82:0:0:82:2940:-264.821,-24.6845,0	1/1:97:0,97:0:0:97:3484:-313.665,-29.1999,0	1/1:102:0,102:0:0:102:3652:-327.918,-30.7051,0	1/1:81:0,81:0:0:81:2912:-262.26,-24.3834,0	1/1:158:0,158:0:0:158:5664:-508.91,-47.5627,0	1/1:81:0,81:0:0:81:2896:-260.859,-24.3834,0	1/1:67:0,67:0:0:67:2392:-214.888,-20.169,0	1/1:136:0,136:0:0:136:4868:-438.19,-40.9401,0	1/1:86:0,86:0:0:86:3084:-277.76,-25.8886,0	1/1:48:0,48:0:0:48:1728:-155.795,-14.4494,0	0/1:94:36,58:36:1292:58:2080:-159.164,0,-88.2869	0/1:105:45,60:45:1612:60:2156:-162.688,0,-113.762	0/1:55:30,25:30:1072:25:900:-64.7644,0,-80.2358	0/1:49:7,42:7:248:42:1504:-120.902,0,-7.91372	1/1:61:2,59:2:72:59:2120:-184.219,-11.5261,0	1/1:65:0,65:0:0:65:2320:-209.054,-19.567,0	0/1:260:115,145:115:4113:145:5186:-388.587,0,-292.085	1/1:187:0,187:0:0:187:6696:-602.555,-56.2926,0	1/1:61:0,61:0:0:61:2192:-197.532,-18.3628,0	0/1:182:70,112:70:2512:112:4012:-306.478,0,-171.544	0/1:99:41,58:41:1467:58:2046:-154.578,0,-102.515	1/1:96:1,95:1:36:95:3416:-304.055,-25.3006,0	0/1:6:2,4:2:64:4:140:-11.1384,0,-4.27251	1/1:17:1,16:1:36:16:576:-48.5685,-1.51924,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:223:100,123:100:3563:123:4390:-328.118,0,-253.749	0/1:126:46,80:46:1635:80:2876:-221.139,0,-109.508	1/1:115:0,115:0:0:115:4128:-371.492,-34.6185,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:118:0,118:0:0:118:4208:-377.823,-35.5215,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:102:0,102:0:0:102:3651:-328.779,-30.7051,0	1/1:123:1,122:1:36:122:4361:-389.054,-33.4284,0	0/1:84:40,44:40:1418:44:1580:-117.198,0,-102.628	0/1:91:33,58:33:1184:58:2072:-158.728,0,-79.4746	1/1:75:0,75:0:0:75:2677:-241.156,-22.5773,0	1/1:185:0,185:0:0:185:6635:-597.147,-55.6906,0	1/1:102:0,102:0:0:102:3625:-326.435,-30.7051,0	1/1:174:0,174:0:0:174:6256:-563.04,-52.3792,0	0/1:90:48,42:48:1724:42:1500:-108.201,0,-128.335	1/1:8:0,8:0:0:8:280:-25.5235,-2.40824,0	1/1:140:0,140:0:0:140:5019:-451.83,-42.1442,0	1/1:58:0,58:0:0:58:2069:-186.437,-17.4597,0	0/1:15:4,11:4:144:11:392:-31.0964,0,-8.79817	1/1:86:0,86:0:0:86:3092:-278.501,-25.8886,0	1/1:41:0,41:0:0:41:1476:-133.113,-12.3422,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	0/1:6:2,4:2:72:4:144:-11.5065,0,-5.03054	1/1:73:0,73:0:0:73:2607:-234.383,-21.9752,0	0/1:138:52,86:52:1868:86:3083:-235.805,0,-126.857	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:169:2,167:2:72:167:5996:-532.901,-44.0373,0	0/1:147:71,76:71:2539:76:2717:-200.509,0,-184.509	1/1:69:2,67:2:72:67:2388:-208.339,-13.9343,0	0/1:46:21,25:21:752:25:896:-67.1083,0,-54.1589	0/1:130:44,86:44:1580:86:3076:-237.919,0,-103.358	0/1:63:51,12:51:1820:12:424:-19.5315,0,-145.116	0/1:55:27,28:27:972:28:1008:-74.4751,0,-71.2413	0/1:55:14,41:14:504:41:1445:-113.784,0,-29.1414	0/1:99:35,64:35:1256:64:2283:-175.926,0,-83.5433	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/1:43:29,14:29:1027:14:492:-31.658,0,-79.7979	0/1:65:34,31:34:1220:31:1112:-80.8162,0,-90.5399	0/1:139:51,88:51:1828:88:3148:-241.687,0,-122.958	1/1:170:0,170:0:0:170:6104:-549.416,-51.1751,0	0/1:56:12,44:12:428:44:1584:-125.986,0,-22.0011	0/1:78:33,45:33:1188:45:1608:-121.51,0,-83.7483	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:98:2,96:2:72:96:3428:-301.867,-22.6642,0	1/1:98:0,98:0:0:98:3474:-312.823,-29.5009,0	1/1:206:1,205:1:36:205:7334:-656.398,-58.4139,0	1/1:116:0,116:0:0:116:4167:-375.201,-34.9195,0	1/1:116:0,116:0:0:116:4156:-373.931,-34.9195,0	1/1:98:0,98:0:0:98:3520:-316.911,-29.5009,0	1/1:150:0,150:0:0:150:5375:-483.739,-45.1545,0	1/1:48:0,48:0:0:48:1716:-154.698,-14.4494,0	0/1:91:46,45:46:1640:45:1596:-116.515,0,-120.45	1/1:92:1,91:1:36:91:3257:-289.725,-24.0965,0	1/1:96:0,96:0:0:96:3432:-309.076,-28.8989,0	0/1:135:59,76:59:2108:76:2732:-205.44,0,-149.35	0/1:87:52,35:52:1860:35:1239:-85.6185,0,-141.488	1/1:79:0,79:0:0:79:2825:-254.484,-23.7814,0	1/1:134:2,132:2:72:132:4724:-418.364,-33.5013,0
chr12	7571160	.	TTG	ATT,ATG	178475	PASS	AB=0.51256,0.483699;ABP=8.13781,11.6474;AC=149,39;AF=0.792553,0.207447;AN=188;AO=6493,1832;CIGAR=1X1M1X,1X2M;DP=8350;DPB=8350;DPRA=0,1.32081;EPP=14076.3,3972.47;EPPR=0;GTI=0;LEN=3,1;MEANALT=1.75532,2.3125;MQM=59.9677,59.9891;MQMR=0;NS=94;NUMALT=2;ODDS=1.22572;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=229797,65341;QR=0;RO=0;RPL=3,1;RPP=14076.3,3972.47;RPPR=0;RPR=6490,1831;RUN=1,1;SAF=6493,1832;SAP=14102.4,3981.15;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:33:0,20,13:0:0:20,13:696,452:-93.6857,-37.0977,-31.0771,-56.9357,0,-53.0223	1/1:133:0,133,0:0:0:133,0:4716,0:-424.603,-40.037,0,-424.603,-40.037,-424.603	1/2:130:0,68,62:0:0:68,62:2401,2220:-376.92,-181.401,-160.931,-195.875,0,-177.211	1/1:205:0,204,1:0:0:204,1:7200,36:-647.548,-61.4101,0,-644.61,-58.1129,-644.309	1/2:89:0,55,34:0:0:55,34:1945,1224:-258.621,-100.232,-83.6754,-158.747,0,-148.511	1/2:83:0,44,39:0:0:44,39:1562,1400:-241.828,-114.559,-101.314,-127.626,0,-115.886	1/1:114:0,113,1:0:0:113,1:3976,36:-357.673,-34.0164,0,-354.736,-30.7191,-354.435	1/2:143:0,95,46:0:0:95,46:3347,1648:-406.973,-134.475,-105.877,-272.568,0,-258.72	1/1:96:0,96,0:0:0:96,0:3394,0:-305.676,-28.8989,0,-305.676,-28.8989,-305.676	1/1:83:0,81,0:0:0:81,0:2851,0:-256.468,-24.3834,0,-256.468,-24.3834,-256.468	1/1:47:0,47,0:0:0:47,0:1625,0:-146.533,-14.1484,0,-146.533,-14.1484,-146.533	1/1:60:0,59,0:0:0:59,0:2092,0:-188.19,-17.7608,0,-188.19,-17.7608,-188.19	1/1:48:0,47,0:0:0:47,0:1686,0:-151.746,-14.1484,0,-151.746,-14.1484,-151.746	1/1:43:0,43,0:0:0:43,0:1534,0:-138.353,-12.9443,0,-138.353,-12.9443,-138.353	1/1:43:0,42,0:0:0:42,0:1500,0:-135.012,-12.6433,0,-135.012,-12.6433,-135.012	1/1:47:0,47,0:0:0:47,0:1671,0:-150.677,-14.1484,0,-150.677,-14.1484,-150.677	1/1:32:0,32,0:0:0:32,0:1152,0:-103.99,-9.63296,0,-103.99,-9.63296,-103.99	1/1:39:0,39,0:0:0:39,0:1384,0:-124.858,-11.7402,0,-124.858,-11.7402,-124.858	1/1:25:0,25,0:0:0:25,0:872,0:-78.7949,-7.52575,0,-78.7949,-7.52575,-78.7949	1/2:159:0,70,89:0:0:70,89:2471,3169:-459.668,-258.642,-237.57,-201.38,0,-174.588	1/2:114:0,66,46:0:0:66,46:2334,1636:-323.516,-133.417,-113.549,-190.188,0,-176.34	1/2:92:0,40,52:0:0:40,52:1412,1846:-265.745,-150.765,-138.724,-115.334,0,-99.6804	1/1:52:0,50,2:0:0:50,2:1747,72:-157.15,-15.0515,0,-151.275,-8.81684,-150.673	1/1:101:0,97,4:0:0:97,4:3444,140:-309.825,-29.1999,0,-298.435,-17.4595,-297.231	1/1:62:0,61,0:0:0:61,0:2140,0:-192.506,-18.3628,0,-192.506,-18.3628,-192.506	1/2:311:0,153,156:0:0:153,156:5411,5527:-891.046,-450.34,-404.282,-440.803,0,-393.842	1/1:208:0,208,0:0:0:208,0:7363,0:-662.726,-62.6142,0,-662.726,-62.6142,-662.726	1/1:27:0,27,0:0:0:27,0:970,0:-87.6177,-8.12781,0,-87.6177,-8.12781,-87.6177	1/2:308:0,166,142:0:0:166,142:5916,5081:-896.824,-414.6,-364.629,-482.581,0,-439.835	1/2:174:0,80,93:0:0:80,93:2828,3305:-499.795,-269.471,-245.389,-230.475,0,-202.479	1/1:123:0,119,4:0:0:119,4:4232,144:-380.702,-35.8226,0,-368.952,-23.7131,-367.748	1/1:1:0,1,0:0:0:1,0:34,0:-3.39891,-0.30103,0,-3.39891,-0.30103,-3.39891	1/2:11:0,8,3:0:0:8,3:288,95:-31.4911,-7.96028,-5.55204,-23.8592,0,-22.9561	1/1:3:0,3,0:0:0:3,0:106,0:-9.8891,-0.90309,0,-9.8891,-0.90309,-9.8891	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:132:0,70,61:0:0:70,61:2489,2196:-382.124,-179.291,-158.218,-202.939,0,-184.576	1/2:170:0,78,92:0:0:78,92:2784,3278:-494.506,-267.542,-244.062,-227.32,0,-199.625	1/1:38:0,38,0:0:0:38,0:1340,0:-120.898,-11.4391,0,-120.898,-11.4391,-120.898	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:134:0,134,0:0:0:134,0:4752,0:-427.842,-40.338,0,-427.842,-40.338,-427.842	1/1:23:0,23,0:0:0:23,0:826,0:-74.6638,-6.92369,0,-74.6638,-6.92369,-74.6638	1/1:125:0,125,0:0:0:125,0:4439,0:-399.684,-37.6288,0,-399.684,-37.6288,-399.684	1/1:49:0,49,0:0:0:49,0:1744,0:-157.244,-14.7505,0,-157.244,-14.7505,-157.244	1/2:46:0,25,21:0:0:25,21:891,748:-133.951,-61.3237,-53.7979,-72.983,0,-66.6614	1/2:81:0,37,43:0:0:37,43:1305,1544:-232.206,-125.949,-114.811,-106.253,0,-93.3083	1/1:147:0,147,0:0:0:147,0:5189,0:-467.15,-44.2514,0,-467.15,-44.2514,-467.15	1/1:197:0,196,0:0:0:196,0:6942,0:-624.491,-59.0019,0,-624.491,-59.0019,-624.491	1/1:101:0,101,0:0:0:101,0:3577,0:-322.137,-30.404,0,-322.137,-30.404,-322.137	1/1:123:0,123,0:0:0:123,0:4368,0:-393.296,-37.0267,0,-393.296,-37.0267,-393.296	1/2:130:0,78,52:0:0:78,52:2737,1860:-374.709,-152.026,-128.546,-223.038,0,-207.384	1/1:9:0,9,0:0:0:9,0:308,0:-28.0496,-2.70927,0,-28.0496,-2.70927,-28.0496	1/1:133:0,133,0:0:0:133,0:4689,0:-422.175,-40.037,0,-422.175,-40.037,-422.175	1/1:15:0,15,0:0:0:15,0:534,0:-48.3943,-4.51545,0,-48.3943,-4.51545,-48.3943	1/2:21:0,15,6:0:0:15,6:540,216:-62.0456,-17.9843,-13.4689,-44.4211,0,-42.6149	1/1:113:0,111,1:0:0:111,1:3924,36:-352.218,-33.4143,0,-349.28,-30.4769,-348.979	1/1:45:0,45,0:0:0:45,0:1603,0:-144.56,-13.5464,0,-144.56,-13.5464,-144.56	1/2:15:0,12,3:0:0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chr12	7571335	.	T	G	120836	PASS	AB=0.51567;ABP=9.61172;AC=147;AF=0.781915;AN=188;AO=5653;CIGAR=1X;DP=7166;DPB=7166;DPRA=0;EPP=12269.7;EPPR=3273.25;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.85;MQMR=59.9721;NS=94;NUMALT=1;ODDS=1.9121;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=202038;QR=53995;RO=1506;RPL=1;RPP=12269.7;RPPR=3264.57;RPR=5652;RUN=1;SAF=0;SAP=12278.3;SAR=5653;SRF=1;SRP=3264.57;SRR=1505;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:34:12,22:12:432:22:782:-60.4682,0,-28.9862	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	0/1:66:20,46:20:716:46:1644:-128.381,0,-44.8997	1/1:136:0,136:0:0:136:4875:-438.891,-40.9401,0	0/1:48:22,25:22:792:25:891:-66.0007,0,-57.0974	0/1:30:16,14:16:561:14:504:-36.6672,0,-41.7862	1/1:98:1,96:1:36:96:3421:-304.501,-25.9615,0	0/1:110:54,56:54:1925:56:2004:-147.249,0,-140.376	1/1:86:0,86:0:0:86:3092:-278.483,-25.8886,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:49:0,49:0:0:49:1742:-156.789,-14.7505,0	1/1:64:0,64:0:0:64:2286:-206.001,-19.2659,0	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	1/1:60:0,60:0:0:60:2115:-190.57,-18.0618,0	1/1:45:0,45:0:0:45:1608:-144.944,-13.5464,0	1/1:57:0,57:0:0:57:2021:-182.149,-17.1587,0	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:133:68,64:68:2444:64:2246:-162.291,0,-180.119	0/1:130:61,69:61:2188:69:2471:-183.509,0,-158.052	0/1:81:45,34:45:1620:34:1205:-84.5433,0,-121.949	1/1:87:1,86:1:36:86:3087:-274.455,-22.5913,0	1/1:91:6,85:6:216:85:3056:-255.475,-7.60322,0	1/1:76:0,76:0:0:76:2703:-243.46,-22.8783,0	0/1:236:116,120:116:4149:120:4275:-313.861,0,-302.549	1/1:245:0,245:0:0:245:8761:-788.471,-73.7524,0	1/1:25:0,25:0:0:25:896:-80.9599,-7.52575,0	0/1:228:97,131:97:3476:131:4696:-354.158,0,-244.414	0/1:89:38,50:38:1368:50:1800:-135.432,0,-96.5704	1/1:99:0,99:0:0:99:3556:-320.244,-29.802,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:187:95,92:95:3408:92:3293:-240.281,0,-250.641	0/1:131:67,64:67:2408:64:2288:-166.746,0,-177.541	1/1:59:0,59:0:0:59:2100:-189.267,-17.7608,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:112:0,112:0:0:112:4006:-360.638,-33.7154,0	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	1/1:172:1,171:1:36:171:6122:-547.434,-48.1789,0	1/1:51:0,51:0:0:51:1827:-164.711,-15.3525,0	0/1:58:24,34:24:864:34:1216:-92.285,0,-60.6228	0/1:91:52,39:52:1872:39:1404:-99.2625,0,-141.365	1/1:105:0,105:0:0:105:3736:-336.434,-31.6082,0	1/1:121:0,121:0:0:121:4336:-390.345,-36.4246,0	1/1:101:0,101:0:0:101:3623:-326.274,-30.404,0	1/1:88:0,88:0:0:88:3151:-283.813,-26.4906,0	0/1:157:68,89:68:2440:89:3192:-240.238,0,-172.593	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:105:0,105:0:0:105:3748:-337.474,-31.6082,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:21:10,11:10:360:11:387:-28.8443,0,-26.4227	1/1:136:1,135:1:36:135:4840:-432.153,-37.3418,0	1/1:46:0,46:0:0:46:1644:-148.247,-13.8474,0	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	1/1:67:0,67:0:0:67:2399:-216.118,-20.169,0	0/1:115:64,51:64:2300:51:1827:-130.09,0,-172.642	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:144:0,144:0:0:144:5164:-464.872,-43.3483,0	0/1:144:58,86:58:2084:86:3036:-230.111,0,-144.482	1/1:63:0,62:0:0:62:2214:-199.164,-18.6639,0	0/1:52:27,25:27:957:25:892:-64.9452,0,-70.7903	0/1:112:50,62:50:1796:62:2207:-165.175,0,-128.17	0/1:98:67,31:67:2397:31:1116:-71.2498,0,-186.484	0/1:19:6,13:6:216:13:468:-36.7397,0,-14.0709	0/1:64:40,24:40:1432:24:860:-58.4559,0,-109.912	0/1:60:33,27:33:1158:27:960:-68.6545,0,-86.4607	0/1:14:7,7:7:248:7:252:-18.8145,0,-18.4498	0/1:111:47,64:47:1680:64:2284:-172.406,0,-118.073	0/1:38:16,22:16:576:22:792:-60.1665,0,-40.7358	0/1:116:46,70:46:1656:70:2520:-192.13,0,-114.409	1/1:138:0,138:0:0:138:4913:-442.263,-41.5421,0	0/1:53:29,24:29:1040:24:864:-62.128,0,-77.9552	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:76:0,76:0:0:76:2719:-244.934,-22.8783,0	1/1:81:0,81:0:0:81:2899:-261.145,-24.3834,0	1/1:170:0,170:0:0:170:6080:-547.297,-51.1751,0	1/1:102:0,102:0:0:102:3597:-323.887,-30.7051,0	1/1:47:0,47:0:0:47:1692:-152.558,-14.1484,0	1/1:49:0,49:0:0:49:1764:-159.042,-14.7505,0	1/1:100:1,99:1:36:99:3547:-315.836,-26.5047,0	1/1:33:0,33:0:0:33:1177:-106.237,-9.93399,0	0/1:59:29,30:29:1044:30:1063:-78.2201,0,-76.514	1/1:50:0,50:0:0:50:1776:-160.108,-15.0515,0	1/1:25:0,25:0:0:25:900:-81.3202,-7.52575,0	0/1:77:36,41:36:1292:41:1429:-105.721,0,-93.4045	0/1:59:37,22:37:1332:22:792:-53.7878,0,-102.422	1/1:111:1,110:1:36:110:3926:-349.93,-29.8161,0	1/1:81:0,81:0:0:81:2888:-260.154,-24.3834,0
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chr12	8155584	.	C	A	30644.4	PASS	AB=0.516387;ABP=9.41559;AC=41;AF=0.218085;AN=188;AO=1426;CIGAR=1X;DP=7085;DPB=7085;DPRA=1.01807;EPP=3099.53;EPPR=12274;GTI=2;LEN=1;MEANALT=1.06818;MQM=40.5729;MQMR=46.0975;NS=94;NUMALT=1;ODDS=0.723659;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50957;QR=199010;RO=5651;RPL=712;RPP=3.01639;RPPR=14.7784;RPR=714;RUN=1;SAF=712;SAP=3.01639;SAR=714;SRF=2738;SRP=14.7784;SRR=2913;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:66:40,26:40:1394:26:936:-59.1033,0,-99.2992	0/0:80:80,0:80:2813:0:0:0,-24.0824,-246.747	0/1:113:62,51:62:2188:51:1832:-120.652,0,-154.26	0/0:84:84,0:84:3004:0:0:0,-25.2865,-263.552	0/1:40:25,15:25:884:15:525:-33.7069,0,-67.376	0/1:45:24,21:24:860:21:756:-49.988,0,-61.6234	0/0:72:72,0:72:2539:0:0:0,-21.6742,-222.112	0/1:68:31,37:31:1087:37:1324:-90.1589,0,-75.1368	0/0:87:87,0:87:3099:0:0:0,-26.1896,-266.8	0/0:57:57,0:57:2001:0:0:0,-17.1587,-176.619	0/0:104:104,0:104:3647:0:0:0,-31.3071,-320.49	0/0:190:190,0:190:6657:0:0:0,-57.1957,-578.744	0/0:139:139,0:139:4827:0:0:0,-41.8432,-418.263	0/0:109:109,0:109:3837:0:0:0,-32.8123,-336.14	0/0:139:139,0:139:4861:0:0:0,-41.8432,-426.127	0/0:130:129,0:129:4548:0:0:0,-38.8329,-396.604	0/0:103:103,0:103:3616:0:0:0,-31.0061,-318.269	0/0:93:93,0:93:3290:0:0:0,-27.9958,-287.614	0/0:76:76,0:76:2652:0:0:0,-22.8783,-229.458	0/1:81:51,30:51:1824:30:1062:-68.7299,0,-135.672	0/1:109:45,64:45:1591:64:2293:-164.217,0,-106.529	0/1:30:12,18:12:432:18:648:-48.5037,0,-29.3125	0/0:55:55,0:55:1960:0:0:0,-16.5566,-171.206	0/0:54:50,4:50:1784:4:144:0,-3.53588,-144.817	0/0:49:49,0:49:1752:0:0:0,-14.7505,-152.873	0/1:110:59,51:59:2108:51:1824:-126.876,0,-154.134	0/0:136:135,0:135:4785:0:0:0,-40.639,-418.092	0/0:73:73,0:73:2550:0:0:0,-21.9752,-223.181	0/1:93:35,58:35:1256:58:2065:-154.902,0,-83.935	0/1:47:27,20:27:942:20:720:-46.8356,0,-67.3211	0/0:79:79,0:79:2795:0:0:0,-23.7814,-245.817	0/1:5:2,3:2:72:3:104:-7.8703,0,-5.31552	0/1:11:10,1:10:356:1:36:-0.143161,0,-26.9069	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.9239	0/1:5:3,2:3:93:2:72:-4.93129,0,-6.00469	0/1:4:3,1:3:108:1:36:-2.18348,0,-7.90143	0/1:316:143,172:143:5063:172:6139:-444.265,0,-353.024	0/1:21:7,14:7:248:14:504:-37.4521,0,-14.9295	0/0:69:69,0:69:2450:0:0:0,-20.7711,-214.091	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.7816	0/0:92:92,0:92:3278:0:0:0,-27.6948,-286.454	0/0:44:44,0:44:1569:0:0:0,-13.2453,-135.903	0/0:104:103,1:103:3629:1:36:0,-27.8526,-312.735	0/0:122:122,0:122:4189:0:0:0,-36.7257,-370.629	0/1:112:55,57:55:1928:57:2028:-143.775,0,-137.57	0/1:36:27,9:27:954:9:324:-18.1591,0,-74.2761	0/0:31:31,0:31:1086:0:0:0,-9.33193,-94.5448	0/0:49:49,0:49:1740:0:0:0,-14.7505,-153.089	0/0:55:55,0:55:1968:0:0:0,-16.5566,-173.396	0/0:64:64,0:64:2277:0:0:0,-19.2659,-202.386	0/1:74:40,34:40:1420:34:1216:-84.6889,0,-103.668	0/0:9:9,0:9:324:0:0:0,-2.70927,-28.8978	0/0:63:63,0:63:2237:0:0:0,-18.9649,-195.114	0/0:24:24,0:24:860:0:0:0,-7.22472,-75.2738	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83188	0/0:74:74,0:74:2568:0:0:0,-22.2762,-224.693	0/0:35:35,0:35:1252:0:0:0,-10.536,-110.51	0/1:11:9,2:9:324:2:72:-3.4073,0,-25.8791	1/1:2:0,1:0:0:1:36:-3.15076,-0.30103,0	0/0:72:72,0:72:2541:0:0:0,-21.6742,-221.688	0/1:138:55,83:55:1946:83:2961:-214.043,0,-129.33	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.73146	0/0:39:39,0:39:1384:0:0:0,-11.7402,-123.198	0/1:63:34,29:34:1172:29:1040:-71.2695,0,-84.739	0/0:42:41,0:41:1435:0:0:0,-12.3422,-124.846	0/1:41:28,12:28:995:12:415:-23.8824,0,-74.0197	0/1:99:46,53:46:1622:53:1883:-135.044,0,-113.065	0/1:56:19,37:19:672:37:1324:-98.5103,0,-42.8454	0/1:59:23,36:23:824:36:1284:-91.9221,0,-54.0937	0/1:42:26,16:26:927:16:576:-36.4769,0,-69.5007	0/1:141:63,78:63:2221:78:2784:-200.685,0,-154.559	0/1:23:8,15:8:288:15:540:-40.6693,0,-18.8953	0/1:42:14,28:14:492:28:1004:-71.943,0,-30.8383	0/1:39:12,27:12:424:27:960:-70.145,0,-25.4167	0/1:117:56,61:56:1946:61:2170:-149.447,0,-135.319	0/0:82:82,0:82:2914:0:0:0,-24.6845,-256.467	0/1:57:28,29:28:1000:29:1036:-69.6341,0,-68.9509	0/1:40:18,22:18:644:22:792:-54.8534,0,-42.1946	0/1:12:8,4:8:288:4:144:-7.70656,0,-21.5142	0/0:73:73,0:73:2554:0:0:0,-21.9752,-224.015	0/0:52:52,0:52:1814:0:0:0,-15.6536,-160.417	0/0:95:94,0:94:3342:0:0:0,-28.2968,-293.154	0/0:111:111,0:111:3853:0:0:0,-33.4143,-343.401	0/0:129:129,0:129:4551:0:0:0,-38.8329,-397.776	0/0:137:137,0:137:4806:0:0:0,-41.2411,-426.266	0/0:218:217,1:217:7574:1:36:0,-62.2784,-663.39	0/0:45:45,0:45:1565:0:0:0,-13.5463,-137.788	0/1:135:63,72:63:2200:72:2592:-175.427,0,-150.493	0/0:118:118,0:118:4065:0:0:0,-35.5215,-350.548	0/0:83:82,0:82:2888:0:0:0,-24.6845,-250.339	0/1:122:75,47:75:2629:47:1684:-109.11,0,-192.239	0/1:123:40,83:40:1375:83:2964:-222.61,0,-85.4649	0/0:61:61,0:61:2167:0:0:0,-18.3628,-191.252	0/0:224:223,1:223:7884:1:36:0,-63.928,-690.678
chr12	8885870	.	G	A	107942	PASS	AB=0.473973;ABP=21.2084;AC=146;AF=0.776596;AN=188;AO=5145;CIGAR=1X;DP=6779;DPB=6779;DPRA=72.8817;EPP=11166.6;EPPR=3549.02;GTI=2;LEN=1;MEANALT=1.01075;MQM=51.6795;MQMR=59.049;NS=94;NUMALT=1;ODDS=0.800908;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183541;QR=58343;RO=1633;RPL=5143;RPP=11157.9;RPPR=3549.02;RPR=2;RUN=1;SAF=5144;SAP=11166.6;SAR=1;SRF=1633;SRP=3549.02;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:34,29:34:1216:29:1027:-72.925,0,-90.2432	1/1:54:0,54:0:0:54:1931:-171.098,-16.2556,0	0/1:71:39,32:39:1400:32:1152:-81.4537,0,-104.805	1/1:150:0,150:0:0:150:5336:-478.504,-45.1545,0	0/1:52:30,22:30:1080:22:784:-55.0507,0,-81.85	0/1:37:25,12:25:896:12:432:-27.8596,0,-69.3903	1/1:84:0,84:0:0:84:3012:-270.685,-25.2865,0	0/1:127:60,67:60:2132:67:2362:-170.35,0,-153.775	1/1:108:0,108:0:0:108:3861:-343.059,-32.5112,0	1/1:61:0,61:0:0:61:2177:-195.664,-18.3628,0	1/1:51:0,51:0:0:51:1828:-163.092,-15.3525,0	1/1:90:0,90:0:0:90:3205:-285.311,-27.0927,0	1/1:74:0,74:0:0:74:2633:-235.238,-22.2762,0	1/1:36:0,36:0:0:36:1296:-116.458,-10.8371,0	1/1:69:1,68:1:36:68:2413:-212.355,-17.1728,0	1/1:54:0,54:0:0:54:1936:-173.855,-16.2556,0	1/1:21:0,21:0:0:21:756:-67.9858,-6.32163,0	1/1:23:0,23:0:0:23:809:-72.6823,-6.92369,0	1/1:34:0,34:0:0:34:1220:-109.289,-10.235,0	0/1:136:69,67:69:2467:67:2377:-172.604,0,-181.207	0/1:110:58,52:58:2064:52:1860:-133.736,0,-151.969	0/1:84:47,37:47:1675:37:1328:-94.4504,0,-125.719	1/1:110:0,110:0:0:110:3910:-350.628,-33.1133,0	1/1:40:0,40:0:0:40:1436:-128.836,-12.0412,0	1/1:88:0,88:0:0:88:3154:-282.735,-26.4906,0	0/1:202:98,104:98:3487:104:3659:-267.498,0,-253.23	1/1:195:0,194:0:0:194:6934:-618.146,-58.3998,0	1/1:33:0,33:0:0:33:1183:-106.291,-9.93399,0	0/1:181:105,76:105:3772:76:2698:-188.314,0,-285.14	0/1:99:49,50:49:1760:50:1788:-129.436,0,-128.79	1/1:83:0,83:0:0:83:2958:-264.533,-24.9855,0	0/1:5:1,4:1:32:4:140:-11.411,0,-1.69416	0/1:11:7,4:7:248:4:144:-9.95914,0,-18.8557	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	0/1:9:5,4:5:180:4:140:-9.53699,0,-13.8063	0/1:8:6,2:6:216:2:72:-4.29825,0,-16.5117	0/1:211:112,99:112:4024:99:3556:-256.289,0,-298.818	0/1:98:58,40:58:2056:40:1416:-97.2564,0,-155.087	1/1:50:0,50:0:0:50:1800:-159.484,-15.0515,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:90:0,90:0:0:90:3213:-288.268,-27.0927,0	1/1:29:0,29:0:0:29:1036:-93.1031,-8.72987,0	1/1:91:0,91:0:0:91:3260:-292.273,-27.3937,0	1/1:59:1,58:1:36:58:2088:-184.164,-14.1625,0	0/1:50:31,19:31:1099:19:680:-46.4011,0,-84.1404	0/1:122:75,47:75:2685:47:1688:-114.843,0,-204.87	1/1:77:0,77:0:0:77:2749:-245.707,-23.1793,0	1/1:123:0,123:0:0:123:4408:-395.219,-37.0267,0	1/1:62:0,62:0:0:62:2224:-199.799,-18.6639,0	1/1:42:0,42:0:0:42:1493:-133.182,-12.6433,0	0/1:43:25,18:25:896:18:633:-44.3107,0,-67.6921	1/1:10:0,10:0:0:10:360:-32.6979,-3.0103,0	1/1:98:0,98:0:0:98:3519:-312.875,-29.5009,0	1/1:45:0,45:0:0:45:1612:-143.582,-13.5464,0	0/1:16:10,6:10:345:6:216:-14.8483,0,-26.5624	1/1:121:1,120:1:36:120:4267:-378.431,-32.8264,0	1/1:30:0,30:0:0:30:1057:-95.3137,-9.0309,0	1/1:4:0,4:0:0:4:140:-12.8324,-1.20412,0	0/1:6:2,4:2:72:4:144:-11.4978,0,-5.03054	1/1:62:0,62:0:0:62:2224:-199.245,-18.6639,0	0/1:96:56,40:56:2008:40:1432:-99.9713,0,-152.056	1/1:3:0,3:0:0:3:108:-9.93145,-0.90309,0	1/1:103:0,103:0:0:103:3666:-329.819,-31.0061,0	0/1:119:74,45:74:2642:45:1612:-108.967,0,-201.547	1/1:47:1,46:1:36:46:1629:-142.674,-10.5501,0	0/1:60:32,28:32:1114:28:1000:-72.006,0,-82.335	0/1:117:51,66:51:1821:66:2319:-172.968,0,-128.894	0/1:104:68,36:68:2439:36:1273:-83.3125,0,-187.958	0/1:35:18,17:18:644:17:612:-44.7381,0,-47.7274	0/1:37:14,23:14:485:23:820:-62.3872,0,-32.8389	0/1:41:19,22:19:676:22:792:-59.1565,0,-48.8258	0/1:20:8,12:8:288:12:432:-33.0154,0,-20.2329	0/1:111:43,68:43:1533:68:2414:-182.596,0,-104.805	0/1:105:53,52:53:1900:52:1845:-132.831,0,-139.658	0/1:103:38,65:38:1364:65:2286:-174.158,0,-92.0098	1/1:143:0,143:0:0:143:5050:-453.327,-43.0473,0	0/1:77:34,43:34:1220:43:1529:-113.588,0,-86.2582	0/1:72:38,34:38:1368:34:1220:-87.6392,0,-101.367	0/1:7:5,2:5:180:2:57:-3.28697,0,-14.4444	1/1:82:0,82:0:0:82:2940:-262.479,-24.6845,0	1/1:54:1,53:1:36:53:1899:-166.1,-12.6578,0	1/1:183:0,183:0:0:183:6527:-584.475,-55.0885,0	1/1:53:0,53:0:0:53:1891:-168.87,-15.9546,0	1/1:63:0,63:0:0:63:2256:-202.873,-18.9649,0	1/1:44:0,44:0:0:44:1580:-142.257,-13.2453,0	1/1:140:0,140:0:0:140:4998:-448.447,-42.1442,0	1/1:23:0,23:0:0:23:828:-74.2864,-6.92369,0	0/1:58:27,31:27:968:31:1116:-81.3197,0,-69.9414	1/1:79:0,79:0:0:79:2828:-249.405,-23.7814,0	1/1:46:0,46:0:0:46:1652:-148.152,-13.8474,0	0/1:124:64,60:64:2279:60:2152:-155.699,0,-167.983	0/1:66:39,27:39:1396:27:937:-64.1002,0,-106.044	1/1:69:0,69:0:0:69:2472:-221.936,-20.7711,0	1/1:101:0,101:0:0:101:3599:-322.163,-30.404,0
chr12	8885942	.	A	G	208317	PASS	AB=0.526764;ABP=41.7167;AC=146;AF=0.776596;AN=188;AO=10143;CIGAR=1X;DP=13128;DPB=13128;DPRA=0;EPP=22028.3;EPPR=6474;GTI=0;LEN=1;MEANALT=1.05319;MQM=47.8354;MQMR=50.4057;NS=94;NUMALT=1;ODDS=5.82106;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=359507;QR=106701;RO=2980;RPL=10143;RPP=22028.3;RPPR=6474;RPR=0;RUN=1;SAF=0;SAP=22028.3;SAR=10143;SRF=0;SRP=6474;SRR=2980;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:57:28,29:28:1004:29:1028:-74.0333,0,-72.6204	1/1:277:3,274:3:108:274:9675:-847.797,-73.3797,0	0/1:214:90,124:90:3236:124:4416:-325.823,0,-223.929	1/1:353:0,353:0:0:353:12499:-1115.81,-106.264,0	0/1:110:49,61:49:1760:61:2158:-159.971,0,-124.204	0/1:64:22,42:22:788:42:1471:-111.594,0,-49.9447	1/1:226:0,226:0:0:226:7951:-710.098,-68.0328,0	0/1:213:122,91:122:4329:91:3244:-223.026,0,-319.655	1/1:107:0,107:0:0:107:3789:-336.064,-32.2102,0	1/1:158:0,157:0:0:157:5578:-496.718,-47.2617,0	1/1:23:0,23:0:0:23:765:-68.8384,-6.92369,0	1/1:64:0,64:0:0:64:2250:-199.414,-19.2659,0	1/1:51:0,51:0:0:51:1795:-158.352,-15.3525,0	1/1:51:0,51:0:0:51:1832:-163.971,-15.3525,0	1/1:56:0,56:0:0:56:2004:-179.389,-16.8577,0	1/1:52:0,52:0:0:52:1855:-165.695,-15.6536,0	1/1:65:0,65:0:0:65:2307:-203.356,-19.567,0	1/1:44:1,43:1:36:43:1532:-131.647,-9.67189,0	1/1:45:0,45:0:0:45:1592:-139.522,-13.5464,0	0/1:366:161,205:161:5762:205:7269:-540.005,0,-406.138	0/1:222:95,127:95:3400:127:4527:-334.463,0,-236.679	0/1:217:139,78:139:4992:78:2770:-181.86,0,-381.656	1/1:135:0,135:0:0:135:4733:-422.696,-40.6391,0	1/1:225:9,216:9:324:216:7605:-649.361,-38.6183,0	1/1:105:0,105:0:0:105:3716:-329.783,-31.6082,0	0/1:500:255,245:255:9151:245:8709:-627.756,0,-671.084	1/1:291:0,291:0:0:291:10321:-917.332,-87.5997,0	1/1:33:0,33:0:0:33:1158:-103.695,-9.93399,0	0/1:417:200,217:200:7172:217:7726:-565.342,0,-518.411	0/1:490:164,326:164:5865:326:11532:-878.238,0,-375.915	1/1:208:3,205:3:108:205:7302:-642.172,-52.5644,0	0/1:8:3,5:3:108:5:180:-14.0159,0,-7.6243	0/1:34:6,28:6:216:28:1000:-79.1807,0,-9.27771	1/1:4:0,4:0:0:4:128:-11.4,-1.20412,0	0/1:5:4,1:4:144:1:36:-2.05347,0,-11.7166	0/1:15:8,7:8:288:7:243:-16.8525,0,-21.5706	0/1:249:103,146:103:3704:146:5135:-384.986,0,-256.595	0/1:305:160,145:160:5726:145:5152:-366.558,0,-419.937	1/1:49:0,49:0:0:49:1716:-151.652,-14.7505,0	0/1:10:9,1:9:324:1:36:-0.563134,0,-26.3707	1/1:278:0,278:0:0:278:9859:-874.976,-83.6863,0	1/1:26:0,26:0:0:26:923:-82.8359,-7.82678,0	1/1:216:0,216:0:0:216:7656:-680.66,-65.0225,0	1/1:65:0,65:0:0:65:2299:-205.677,-19.567,0	0/1:64:23,41:23:816:41:1443:-110.049,0,-53.1659	0/1:141:79,62:79:2836:62:2203:-153.887,0,-212.44	1/1:193:4,189:4:144:189:6709:-579.429,-44.8908,0	1/1:366:0,366:0:0:366:12988:-1160.52,-110.177,0	1/1:157:0,157:0:0:157:5571:-498.355,-47.2617,0	1/1:260:1,258:1:36:258:9195:-816.996,-74.8184,0	0/1:225:107,118:107:3840:118:4180:-304.783,0,-276.62	1/1:18:0,18:0:0:18:640:-57.6889,-5.41854,0	1/1:179:0,179:0:0:179:6326:-561.07,-53.8844,0	1/1:77:0,77:0:0:77:2748:-244.998,-23.1793,0	0/1:32:24,8:24:852:8:276:-15.3168,0,-66.8704	1/1:189:1,188:1:36:188:6656:-587.843,-53.3116,0	1/1:88:1,87:1:36:87:3099:-273.427,-23.5099,0	0/1:16:9,7:9:324:7:248:-17.7326,0,-24.6125	0/1:26:14,12:14:485:12:432:-31.1106,0,-35.2882	1/1:91:0,91:0:0:91:3244:-289.15,-27.3937,0	0/1:87:43,44:43:1544:44:1567:-114.333,0,-112.03	1/1:17:0,17:0:0:17:608:-54.1265,-5.11751,0	1/1:347:0,346:0:0:346:12261:-1093.91,-104.156,0	0/1:296:139,157:139:4963:157:5611:-412.449,0,-355.312	1/1:94:6,88:6:216:88:3128:-259.783,-8.59005,0	0/1:130:57,73:57:2021:73:2582:-190.628,0,-140.396	0/1:331:160,171:160:5740:171:6041:-437.803,0,-413.974	0/1:146:100,46:100:3588:46:1654:-103.119,0,-277.501	0/1:29:11,18:11:396:18:644:-48.5134,0,-26.8337	0/1:134:58,76:58:2079:76:2691:-197.772,0,-144.656	0/1:80:48,32:48:1707:32:1140:-77.9146,0,-129.008	0/1:24:9,15:9:320:15:510:-38.6113,0,-21.6085	0/1:148:84,64:84:2997:64:2237:-154.231,0,-221.94	0/1:65:32,33:32:1148:33:1180:-85.1315,0,-83.3449	0/1:221:93,128:93:3318:128:4523:-335.289,0,-229.282	1/1:264:2,262:2:72:262:9254:-820.061,-72.7804,0	0/1:158:69,89:69:2475:89:3163:-230.498,0,-173.42	0/1:192:84,108:84:3012:108:3851:-283.189,0,-211.036	0/1:18:9,9:9:324:9:324:-23.7621,0,-23.6336	1/1:199:0,199:0:0:199:7094:-630.725,-59.905,0	1/1:149:0,149:0:0:149:5290:-467.314,-44.8535,0	1/1:321:0,321:0:0:321:11379:-1013.54,-96.6306,0	1/1:72:0,72:0:0:72:2556:-228.913,-21.6742,0	1/1:46:0,46:0:0:46:1630:-145.968,-13.8474,0	1/1:96:1,95:1:36:95:3373:-298.363,-25.4444,0	1/1:123:2,121:2:72:121:4294:-376.773,-30.2808,0	1/1:28:0,28:0:0:28:987:-86.6504,-8.42884,0	0/1:90:32,58:32:1152:58:2055:-155.174,0,-74.7224	1/1:65:0,65:0:0:65:2307:-205.082,-19.567,0	1/1:20:0,20:0:0:20:708:-63.2869,-6.0206,0	0/1:62:34,28:34:1224:28:987:-69.6152,0,-90.9741	0/1:10:8,2:8:275:2:72:-3.79749,0,-22.0193	1/1:147:1,145:1:36:145:5127:-453.353,-40.802,0	1/1:94:1,92:1:36:92:3249:-287.269,-24.7601,0
chr12	8885954	.	C	T	47563.4	PASS	AB=0.468949;ABP=55.6028;AC=42;AF=0.223404;AN=188;AO=2974;CIGAR=1X;DP=13282;DPB=13282;DPRA=1.25476;EPP=6460.97;EPPR=22373.5;GTI=0;LEN=1;MEANALT=1.07843;MQM=50.3742;MQMR=47.8289;NS=94;NUMALT=1;ODDS=5.30791;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105849;QR=368621;RO=10302;RPL=2974;RPP=6460.97;RPPR=22373.5;RPR=0;RUN=1;SAF=0;SAP=6460.97;SAR=2974;SRF=0;SRP=22373.5;SRR=10302;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:58:29,29:29:1044:29:1044:-75.8826,0,-74.9512	0/0:279:275,3:275:9849:3:108:0,-74.0175,-862.4	0/1:216:124,91:124:4452:91:3245:-224.216,0,-328.691	0/0:358:358,0:358:12805:0:0:0,-107.769,-1142.69	0/1:110:59,51:59:2120:51:1813:-128.704,0,-156.54	0/1:65:42,23:42:1504:23:824:-54.1175,0,-114.372	0/0:232:232,0:232:8296:0:0:0,-69.839,-739.395	0/1:221:96,125:96:3428:125:4464:-328.878,0,-237.044	0/0:107:107,0:107:3844:0:0:0,-32.2102,-338.99	0/0:162:159,3:159:5689:3:104:0,-39.2804,-497.583	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.1505	0/0:63:63,0:63:2249:0:0:0,-18.9649,-199.614	0/0:51:51,0:51:1820:0:0:0,-15.3525,-160.31	0/0:52:52,0:52:1859:0:0:0,-15.6536,-166.396	0/0:56:56,0:56:2016:0:0:0,-16.8577,-180.291	0/0:51:51,0:51:1832:0:0:0,-15.3525,-163.675	0/0:65:65,0:65:2327:0:0:0,-19.5669,-204.942	0/0:44:43,1:43:1540:1:36:0,-9.67189,-131.899	0/0:46:46,0:46:1627:0:0:0,-13.8474,-142.494	0/1:375:210,165:210:7532:165:5870:-412.788,0,-560.795	0/1:222:127,95:127:4560:95:3396:-236.013,0,-337.199	0/1:217:81,136:81:2912:136:4779:-362.462,0,-193.659	0/0:136:136,0:136:4876:0:0:0,-40.9401,-433.979	0/0:224:216,8:216:7752:8:288:0,-41.5424,-665.178	0/0:106:106,0:106:3796:0:0:0,-31.9092,-337.581	0/1:501:246,254:246:8789:254:9036:-660.22,0,-634.681	0/0:299:299,0:299:10670:0:0:0,-90.008,-948.292	0/0:32:32,0:32:1144:0:0:0,-9.63296,-102.409	0/1:422:222,199:222:7948:199:7109:-511.203,0,-583.621	0/1:496:335,161:335:11996:161:5703:-360.316,0,-917.588	0/0:207:204,3:204:7286:3:108:0,-52.2634,-640.815	0/1:8:5,3:5:180:3:108:-7.6243,0,-14.0159	0/1:35:29,6:29:1040:6:212:-8.62805,0,-82.443	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.96413	0/1:5:1,4:1:36:4:140:-11.3612,0,-2.05347	0/1:15:7,8:7:229:8:288:-21.5706,0,-16.0529	0/1:252:151,101:151:5424:101:3560:-242.858,0,-409.302	0/1:305:146,159:146:5220:159:5696:-417.414,0,-372.46	0/0:48:48,0:48:1724:0:0:0,-14.4494,-151.931	0/1:10:1,9:1:36:9:324:-26.3707,0,-0.563134	0/0:278:278,0:278:9960:0:0:0,-83.6863,-885.149	0/0:26:26,0:26:936:0:0:0,-7.82678,-83.9757	0/0:220:220,0:220:7900:0:0:0,-66.2266,-701.249	0/0:67:67,0:67:2391:0:0:0,-20.169,-213.64	0/1:65:40,25:40:1436:25:892:-58.957,0,-108.91	0/1:144:63,81:63:2260:81:2896:-216.936,0,-158.073	0/0:189:186,3:186:6672:3:108:0,-46.8891,-577.56	0/0:373:373,0:373:13323:0:0:0,-112.284,-1190.02	0/0:158:158,0:158:5641:0:0:0,-47.5627,-504.492	0/0:262:262,0:262:9364:0:0:0,-78.8699,-835.947	0/1:227:122,105:122:4369:105:3749:-267.862,0,-320.397	0/0:17:17,0:17:608:0:0:0,-5.11751,-54.8171	0/0:185:184,0:184:6566:0:0:0,-55.3895,-581.638	0/0:79:79,0:79:2820:0:0:0,-23.7814,-249.785	0/1:32:9,23:9:315:23:813:-63.366,0,-18.6046	0/0:192:191,1:191:6836:1:36:0,-54.2147,-602.591	0/0:91:91,0:91:3233:0:0:0,-27.3937,-287.906	0/1:18:8,10:8:284:10:360:-27.1924,0,-20.2921	0/1:25:12,13:12:432:13:449:-32.5805,0,-31.4116	0/0:94:94,0:94:3357:0:0:0,-28.2968,-299.175	0/1:87:44,43:44:1580:43:1540:-111.799,0,-115.483	0/0:17:17,0:17:612:0:0:0,-5.11751,-54.1679	0/0:347:347,0:347:12382:0:0:0,-104.457,-1104.37	0/1:297:159,138:159:5683:138:4891:-346.757,0,-418.873	0/0:96:90,6:90:3213:6:216:0,-9.1921,-266.138	0/1:130:70,60:70:2500:60:2137:-150.452,0,-183.157	0/1:328:171,157:171:6117:157:5640:-406.309,0,-444.718	0/1:142:45,97:45:1616:97:3427:-264.521,0,-100.847	0/1:30:20,10:20:703:10:360:-23.5749,0,-53.4605	0/1:135:77,58:77:2733:58:2064:-143.193,0,-201.154	0/1:80:32,48:32:1148:48:1708:-129.142,0,-78.6225	0/1:27:18,9:18:625:9:312:-20.1038,0,-47.9805	0/1:159:72,87:72:2584:87:3071:-223.533,0,-181.478	0/1:67:34,33:34:1208:33:1184:-85.959,0,-87.0455	0/1:220:126,94:126:4512:94:3350:-232.432,0,-333.029	0/0:271:270,1:270:9660:1:36:0,-77.9899,-857.929	0/1:160:90,70:90:3236:70:2489:-173.942,0,-236.068	0/1:193:109,84:109:3900:84:2978:-207.575,0,-287.222	0/1:18:9,9:9:324:9:324:-23.6336,0,-23.7621	0/0:204:203,0:203:7273:0:0:0,-61.1091,-645.668	0/0:160:160,0:160:5727:0:0:0,-48.1648,-505.446	0/0:328:328,0:328:11714:0:0:0,-98.7378,-1042.59	0/0:76:76,0:76:2728:0:0:0,-22.8783,-244.055	0/0:46:46,0:46:1648:0:0:0,-13.8474,-147.566	0/0:96:96,0:96:3452:0:0:0,-28.8989,-308.769	0/0:126:126,0:126:4503:0:0:0,-37.9298,-402.302	0/0:28:28,0:28:1008:0:0:0,-8.42884,-88.2905	0/1:91:60,31:60:2152:31:1116:-72.3744,0,-163.057	0/0:65:65,0:65:2332:0:0:0,-19.5669,-207.392	0/0:20:20,0:20:716:0:0:0,-6.0206,-63.9823	0/1:63:29,34:29:1031:34:1204:-88.9181,0,-73.2248	0/1:9:2,7:2:72:7:244:-19.5422,0,-4.09852	0/0:150:150,0:150:5364:0:0:0,-45.1545,-477.618	0/0:96:96,0:96:3443:0:0:0,-28.8989,-308.356
chr12	8952305	.	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chr12	9422965	.	C	G	194029	PASS	AB=0.509467;ABP=7.03944;AC=147;AF=0.781915;AN=188;AO=9097;CIGAR=1X;DP=11657;DPB=11657;DPRA=0;EPP=19756.9;EPPR=5548.95;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9926;MQMR=59.9745;NS=94;NUMALT=1;ODDS=1.35045;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=325165;QR=91450;RO=2554;RPL=0;RPP=19756.9;RPPR=5548.95;RPR=9097;RUN=1;SAF=9097;SAP=19756.9;SAR=0;SRF=2554;SRP=5548.95;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:33,21:33:1184:21:737:-50.395,0,-90.6127	1/1:187:0,186:0:0:186:6652:-598.399,-55.9916,0	0/1:129:56,73:56:1983:73:2616:-196.855,0,-139.911	1/1:278:0,278:0:0:278:9954:-895.798,-83.6863,0	0/1:103:44,59:44:1572:59:2116:-159.703,0,-110.766	0/1:78:39,39:39:1400:39:1392:-102.099,0,-102.819	1/1:223:0,223:0:0:223:7977:-717.951,-67.1297,0	0/1:159:91,68:91:3248:68:2408:-169.111,0,-244.678	1/1:98:0,98:0:0:98:3497:-314.94,-29.5009,0	1/1:143:0,143:0:0:143:5090:-458.243,-43.0473,0	1/1:85:0,85:0:0:85:3060:-275.627,-25.5876,0	1/1:89:0,89:0:0:89:3150:-283.724,-26.7917,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:83:0,83:0:0:83:2964:-266.994,-24.9855,0	1/1:73:0,73:0:0:73:2616:-235.688,-21.9752,0	1/1:89:0,89:0:0:89:3185:-286.872,-26.7917,0	1/1:63:0,63:0:0:63:2222:-200.241,-18.9649,0	1/1:59:0,59:0:0:59:2112:-190.349,-17.7608,0	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	0/1:283:120,163:120:4300:163:5808:-437.642,0,-301.985	0/1:195:90,105:90:3232:105:3775:-281.247,0,-232.4	0/1:216:155,61:155:5556:61:2173:-130.812,0,-435.141	1/1:125:3,122:3:108:122:4361:-382.588,-27.5536,0	1/1:159:4,155:4:144:155:5522:-483.791,-34.5502,0	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	0/1:339:135,204:135:4829:204:7302:-555.177,0,-332.714	1/1:225:0,225:0:0:225:8066:-725.953,-67.7318,0	1/1:48:0,48:0:0:48:1728:-155.782,-14.4494,0	0/1:295:161,134:161:5764:134:4797:-343.08,0,-430.072	0/1:178:64,114:64:2296:114:4081:-313.891,0,-153.318	1/1:167:0,167:0:0:167:5981:-538.394,-50.272,0	0/1:19:6,13:6:216:13:464:-36.3779,0,-14.0709	0/1:17:2,15:2:72:15:540:-43.819,0,-1.71921	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	0/1:15:2,13:2:72:13:449:-36.222,0,-2.32127	0/1:260:141,118:141:5052:118:4240:-303.451,0,-376.128	0/1:205:102,103:102:3656:103:3708:-272.209,0,-267.532	1/1:128:0,128:0:0:128:4589:-413.174,-38.5318,0	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	1/1:217:0,217:0:0:217:7743:-696.898,-65.3235,0	1/1:51:0,51:0:0:51:1832:-165.158,-15.3525,0	1/1:169:0,168:0:0:168:6003:-540.011,-50.573,0	1/1:106:1,105:1:32:105:3722:-331.982,-28.7099,0	0/1:81:38,43:38:1364:43:1532:-113.79,0,-98.6773	0/1:147:81,65:81:2900:65:2321:-164.838,0,-216.926	1/1:190:0,190:0:0:190:6744:-607.026,-57.1957,0	1/1:214:1,213:1:36:213:7556:-676.483,-60.8221,0	1/1:139:1,138:1:32:138:4941:-441.639,-38.6439,0	1/1:162:0,162:0:0:162:5798:-521.913,-48.7669,0	0/1:276:134,142:134:4796:142:5077:-373.988,0,-348.712	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:205:0,205:0:0:205:7341:-660.737,-61.7112,0	1/1:90:0,90:0:0:90:3229:-290.83,-27.0927,0	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	1/1:189:0,189:0:0:189:6750:-607.572,-56.8947,0	1/1:80:0,80:0:0:80:2855:-257.186,-24.0824,0	0/1:13:4,9:4:144:9:316:-24.8655,0,-9.40023	0/1:24:12,12:12:428:12:432:-31.9965,0,-31.6341	1/1:117:0,117:0:0:117:4184:-376.74,-35.2205,0	0/1:142:65,77:65:2324:77:2756:-205.535,0,-166.674	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:192:0,192:0:0:192:6813:-613.24,-57.7978,0	0/1:262:114,147:114:4077:147:5268:-395.327,0,-288.186	1/1:75:4,71:4:144:71:2548:-216.257,-9.26363,0	0/1:86:37,49:37:1320:49:1744:-131.356,0,-93.2134	0/1:218:94,124:94:3376:124:4436:-333.787,0,-238.112	0/1:169:107,62:107:3848:62:2197:-147.12,0,-295.64	0/1:29:15,14:15:540:14:504:-36.9682,0,-40.2067	0/1:91:43,48:43:1540:48:1724:-128.052,0,-111.499	0/1:90:49,41:49:1756:41:1468:-105.323,0,-131.231	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:167:65,102:65:2324:102:3645:-277.981,0,-159.148	0/1:55:26,29:26:936:29:1036:-76.9973,0,-68.0028	0/1:228:119,109:119:4249:109:3897:-282.288,0,-313.94	1/1:168:0,168:0:0:168:5986:-538.846,-50.573,0	0/1:115:64,51:64:2292:51:1813:-128.831,0,-171.923	0/1:88:41,47:41:1476:47:1684:-125.356,0,-106.646	0/1:27:9,18:9:324:18:637:-49.5306,0,-21.378	1/1:153:0,153:0:0:153:5500:-495.124,-46.0576,0	1/1:172:3,169:3:104:169:6045:-534.446,-42.0744,0	1/1:340:0,340:0:0:340:12157:-1093.98,-102.35,0	1/1:115:0,114:0:0:114:4069:-366.036,-34.3174,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	1/1:157:0,157:0:0:157:5637:-507.449,-47.2617,0	1/1:59:0,59:0:0:59:2088:-188.188,-17.7608,0	0/1:106:50,56:50:1780:56:2004:-148.724,0,-128.574	1/1:100:0,100:0:0:100:3592:-323.486,-30.103,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	0/1:101:51,50:51:1828:50:1796:-131.518,0,-134.397	0/1:80:57,23:57:2048:23:828:-50.7617,0,-160.509	1/1:122:0,122:0:0:122:4346:-391.313,-36.7257,0	1/1:98:1,97:1:36:97:3479:-309.723,-25.9027,0
chr12	9468330	.	A	T	8721.96	PASS	AB=0.463651;ABP=39.7925;AC=45;AF=0.244565;AN=184;AO=1500;CIGAR=1X;DP=6889;DPB=6889;DPRA=0.893615;EPP=3260.22;EPPR=11633.5;GTI=7;LEN=1;MEANALT=1.01887;MQM=24.0007;MQMR=21.5308;NS=92;NUMALT=1;ODDS=3.72394;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=53684;QR=193166;RO=5388;RPL=1500;RPP=3260.22;RPPR=11633.5;RPR=0;RUN=1;SAF=0;SAP=3260.22;SAR=1500;SRF=0;SRP=11702.9;SRR=5388;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:19,18:19:680:18:648:-26.5918,0,-23.0642	0/0:53:53,0:53:1900:0:0:0,-15.9546,-94.3485	0/1:122:55,67:55:1972:67:2396:-100.809,0,-64.5543	0/0:192:192,0:192:6877:0:0:0,-57.7978,-388.865	0/0:65:65,0:65:2336:0:0:0,-19.5669,-116.473	0/0:25:25,0:25:900:0:0:0,-7.52575,-44.9589	0/1:92:51,41:51:1832:41:1464:-70.6888,0,-77.2818	0/0:101:101,0:101:3636:0:0:0,-30.404,-180.141	0/1:69:36,32:36:1292:32:1144:-45.2626,0,-44.2034	0/0:76:76,0:76:2736:0:0:0,-22.8783,-154.688	0/0:56:56,0:56:2007:0:0:0,-16.8577,-117.176	0/1:84:42,42:42:1503:42:1504:-61.1978,0,-50.0482	0/1:51:30,21:30:1076:21:748:-28.0475,0,-38.5442	0/1:46:20,26:20:716:26:936:-44.7623,0,-22.2896	0/1:77:40,37:40:1440:37:1332:-65.1199,0,-61.1387	0/0:59:59,0:59:2101:0:0:0,-17.7608,-105.587	0/0:25:25,0:25:900:0:0:0,-7.52575,-45.7847	0/0:35:35,0:35:1260:0:0:0,-10.536,-62.8629	0/0:32:32,0:32:1152:0:0:0,-9.63296,-56.6018	0/1:88:60,28:60:2147:28:1004:-40.4577,0,-95.3623	0/1:83:50,33:50:1785:33:1180:-49.3506,0,-63.5388	0/1:75:34,41:34:1220:41:1468:-25.4408,0,-41.2209	0/1:124:55,69:55:1980:69:2476:-126.861,0,-74.6446	0/0:23:22,1:22:792:1:36:0,-4.45678,-37.1208	0/0:93:93,0:93:3344:0:0:0,-27.9958,-164.463	0/0:259:259,0:259:9272:0:0:0,-77.9668,-504.903	0/0:189:189,0:189:6763:0:0:0,-56.8947,-334.13	0/1:35:23,12:23:828:12:432:-17.0871,0,-30.8421	0/1:122:71,51:71:2548:51:1824:-22.9711,0,-101.352	0/1:86:43,43:43:1525:43:1548:-69.6577,0,-50.6688	0/0:74:74,0:74:2651:0:0:0,-22.2762,-153.063	0/1:9:2,7:2:72:7:252:-13.0789,0,-1.07046	0/0:7:7,0:7:252:0:0:0,-2.10721,-12.7317	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-5.57013	0/0:20:20,0:20:720:0:0:0,-6.0206,-36.6565	0/0:196:196,0:196:7037:0:0:0,-59.0019,-386.27	0/0:94:94,0:94:3368:0:0:0,-28.2968,-168.242	0/0:43:43,0:43:1530:0:0:0,-12.9443,-77.1746	0/0:4:4,0:4:144:0:0:0,-1.20412,-7.36053	0/1:101:50,51:50:1796:51:1824:-84.1294,0,-59.6908	0/0:25:25,0:25:900:0:0:0,-7.52575,-44.9589	0/1:80:47,33:47:1688:33:1188:-49.5048,0,-59.0169	0/1:33:20,13:20:720:13:468:-21.3195,0,-33.6924	0/0:55:55,0:55:1976:0:0:0,-16.5566,-111	0/0:174:173,1:173:6216:1:36:0,-51.0813,-338.228	0/1:77:45,32:45:1620:32:1148:-42.384,0,-57.7379	0/1:113:64,49:64:2300:49:1737:-81.9586,0,-97.8753	0/0:90:90,0:90:3207:0:0:0,-27.0927,-186.167	0/0:94:94,0:94:3380:0:0:0,-28.2968,-193.047	0/0:52:52,0:52:1856:0:0:0,-15.6536,-103.039	0/1:10:5,5:5:180:5:180:-9.17326,0,-6.29502	0/1:174:123,51:123:4420:51:1828:-52.3943,0,-167.419	0/0:80:79,1:79:2840:1:36:0,-22.7845,-153.064	0/1:3:2,1:2:72:1:36:-1.37578,0,-3.50295	0/1:86:52,34:52:1860:34:1216:-49.5931,0,-68.558	0/0:38:38,0:38:1360:0:0:0,-11.4391,-77.3267	0/1:8:2,6:2:72:6:216:-5.96852,0,-1.73975	0/0:23:18,5:18:648:5:176:0,-0.95603,-29.1725	0/0:57:57,0:57:2044:0:0:0,-17.1587,-102.802	0/1:89:47,42:47:1684:42:1512:-73.8196,0,-70.8386	.:.:.:.:.:.:.:.	0/1:138:82,56:82:2944:56:2008:-23.9981,0,-119.66	0/1:105:65,40:65:2336:40:1436:-64.0106,0,-94.3931	0/1:57:32,25:32:1140:25:896:-38.7761,0,-41.7261	0/1:54:25,29:25:896:29:1040:-52.9124,0,-34.3328	0/0:155:155,0:155:5560:0:0:0,-46.6596,-315.206	0/1:94:42,52:42:1495:52:1844:-94.6218,0,-56.4046	0/1:38:16,22:16:576:22:792:-37.6523,0,-17.4062	0/1:45:26,19:26:936:19:676:-25.5956,0,-32.7577	0/1:23:12,11:12:432:11:396:-6.05568,0,-16.8727	0/1:20:10,10:10:360:10:360:-18.0817,0,-14.7171	0/0:81:80,1:80:2859:1:36:0,-22.1046,-141.37	0/0:65:64,1:64:2292:1:36:0,-17.2881,-112.019	0/0:169:169,0:169:6043:0:0:0,-50.8741,-302.466	0/0:134:134,0:134:4808:0:0:0,-40.338,-271.001	0/1:77:43,34:43:1548:34:1208:-46.6731,0,-55.441	0/0:64:63,1:63:2260:1:36:0,-16.9871,-109.977	0/1:10:8,2:8:284:2:72:-1.31954,0,-11.4975	0/0:109:109,0:109:3885:0:0:0,-32.8123,-196.093	0/1:78:40,38:40:1427:38:1345:-54.2784,0,-47.8556	0/0:186:186,0:186:6663:0:0:0,-55.9916,-373.921	0/1:60:29,31:29:1044:31:1101:-55.9753,0,-42.3416	0/1:70:29,41:29:1040:41:1468:-77.328,0,-40.6207	0/0:33:33,0:33:1188:0:0:0,-9.93399,-67.2103	0/1:138:69,69:69:2463:69:2476:-122.751,0,-100.179	0/1:17:8,9:8:288:9:320:-13.5417,0,-9.40462	0/0:51:51,0:51:1828:0:0:0,-15.3525,-90.5844	0/0:57:57,0:57:2052:0:0:0,-17.1587,-103.275	0/0:39:39,0:39:1400:0:0:0,-11.7402,-69.1166	0/1:124:67,57:67:2390:57:2052:-89.5445,0,-81.8037	0/1:83:27,56:27:968:56:1985:-108.131,0,-29.5251	0/0:63:60,3:60:2152:3:108:0,-11.5488,-121.219	0/0:66:66,0:66:2368:0:0:0,-19.868,-138.076
chr12	9639520	.	A	G	650339	PASS	AB=0.783561;ABP=10241.6;AC=149;AF=0.792553;AN=188;AO=25457;CIGAR=1X;DP=28696;DPB=28696;DPRA=0;EPP=55238.8;EPPR=6977.79;GTI=8;LEN=1;MEANALT=1.17021;MQM=59.9785;MQMR=59.9907;NS=94;NUMALT=1;ODDS=1.53971;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=893334;QR=114664;RO=3220;RPL=6401;RPP=13663.7;RPPR=1536.57;RPR=19056;RUN=1;SAF=6400;SAP=13668;SAR=19057;SRF=856;SRP=1536.57;SRR=2364;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:43:5,38:5:180:38:1323:-106.422,0,-3.60777	1/1:320:0,319:0:0:319:11164:-1004.34,-96.0286,0	0/1:183:38,145:38:1342:145:5089:-403.071,0,-65.9901	1/1:752:2,750:2:68:750:26368:-2365.97,-219.917,0	0/1:77:16,61:16:576:61:2179:-173.196,0,-28.9957	0/1:69:14,55:14:504:55:1916:-151.942,0,-24.927	1/1:358:0,358:0:0:358:12704:-1143.11,-107.769,0	0/1:224:41,183:41:1468:183:6376:-506.509,0,-64.9854	1/1:148:0,148:0:0:148:5189:-465.966,-44.5524,0	1/1:570:0,569:0:0:569:20084:-1806.74,-171.286,0	1/1:296:1,294:1:36:294:10297:-923.128,-85.5205,0	1/1:131:1,130:1:32:130:4524:-404.13,-36.2356,0	1/1:149:1,148:1:36:148:5197:-464.267,-41.2552,0	1/1:218:1,217:1:36:217:7544:-675.417,-62.0263,0	1/1:215:0,215:0:0:215:7557:-680.186,-64.7215,0	1/1:113:0,113:0:0:113:3935:-354.275,-34.0164,0	1/1:305:1,304:1:36:304:10648:-954.652,-88.2159,0	1/1:238:0,238:0:0:238:8319:-748.734,-71.6451,0	1/1:144:0,144:0:0:144:5071:-456.541,-43.3483,0	0/1:797:189,606:189:6772:606:21368:-1682.93,0,-369.874	0/1:396:96,300:96:3415:300:10511:-826.713,0,-188.357	0/1:396:86,310:86:3058:310:10873:-858.398,0,-156.241	1/1:171:0,170:0:0:170:6009:-540.603,-51.1751,0	1/1:162:10,152:10:356:152:5344:-448.716,-16.3856,0	1/1:86:1,85:1:36:85:3003:-266.904,-22.2903,0	0/1:1073:221,851:221:7846:851:29908:-2367.8,0,-383.109	1/1:325:3,322:3:108:322:11319:-1008.5,-87.7596,0	1/1:69:0,69:0:0:69:2386:-214.995,-20.7711,0	0/1:903:175,728:175:6218:728:25393:-2012.9,0,-287.88	0/1:399:62,336:62:2193:336:11796:-941.33,0,-77.4645	1/1:305:0,304:0:0:304:10636:-956.815,-91.5131,0	0/1:15:5,10:5:180:10:347:-27.0473,0,-12.0366	0/1:61:10,51:10:360:51:1785:-142.568,0,-14.3815	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:15:1,14:1:36:14:500:-41.7379,-0.917175,0	0/1:36:6,30:6:216:30:1058:-84.6809,0,-8.95343	0/1:1046:243,803:243:8636:803:27824:-2188.57,0,-462.361	0/1:269:43,226:43:1535:226:7983:-637.514,0,-57.4653	1/1:199:0,199:0:0:199:6917:-622.61,-59.905,0	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	1/1:218:0,218:0:0:218:7613:-685.215,-65.6245,0	1/1:124:0,123:0:0:123:4316:-388.261,-37.0267,0	1/1:204:0,204:0:0:204:7187:-646.895,-61.4101,0	1/1:400:1,399:1:36:399:13994:-1255.66,-116.814,0	0/1:326:72,253:72:2571:253:8858:-699.03,0,-133.445	0/1:337:57,280:57:2035:280:9735:-774.673,0,-81.9745	1/1:153:0,153:0:0:153:5357:-482.267,-46.0576,0	1/1:476:3,473:3:108:473:16652:-1488.18,-133.215,0	1/1:409:1,408:1:36:408:14431:-1294.96,-119.523,0	1/1:670:2,668:2:72:668:23584:-2115.11,-194.853,0	0/1:724:138,586:138:4886:586:20393:-1616.98,0,-221.949	1/1:41:0,41:0:0:41:1450:-130.794,-12.3422,0	1/1:342:0,339:0:0:339:11906:-1071.05,-102.049,0	1/1:166:0,166:0:0:166:5754:-517.986,-49.971,0	1/1:81:6,75:6:216:75:2670:-220.753,-4.59292,0	1/1:102:0,102:0:0:102:3582:-322.588,-30.7051,0	1/1:60:0,60:0:0:60:2127:-191.698,-18.0618,0	0/1:38:14,24:14:496:24:851:-65.4703,0,-33.5351	0/1:131:31,100:31:1108:100:3514:-277.028,0,-60.5961	1/1:176:1,175:1:36:175:6132:-548.387,-49.383,0	0/1:583:137,445:137:4892:445:15527:-1221.63,0,-264.874	1/1:13:0,13:0:0:13:447:-40.5577,-3.91339,0	1/1:461:4,456:4:136:456:15974:-1424.8,-126.254,0	0/1:682:128,553:128:4565:553:19508:-1549.81,0,-205.8	1/1:170:1,168:1:36:168:5818:-520.146,-47.6356,0	0/1:217:30,187:30:1062:187:6662:-534.337,0,-30.5665	0/1:962:218,743:218:7777:743:26151:-2062.83,0,-410.313	0/1:572:158,414:158:5594:414:14594:-1141.03,0,-331.4	0/1:122:32,90:32:1152:90:3184:-250.058,0,-67.2645	0/1:147:31,116:31:1095:116:4090:-324.034,0,-54.6077	0/1:472:95,377:95:3382:377:13163:-1042.42,0,-162.51	1/1:110:0,110:0:0:110:3866:-348.135,-33.1133,0	0/1:197:50,147:50:1787:147:5185:-407.489,0,-101.809	0/1:301:57,244:57:2044:244:8590:-682.457,0,-93.6071	0/1:441:77,364:77:2751:364:12686:-1008.83,0,-115.077	1/1:673:1,672:1:36:672:23685:-2127.46,-198.995,0	0/1:296:64,232:64:2288:232:8131:-642.708,0,-117.077	0/1:825:191,634:191:6782:634:22357:-1763.23,0,-362.104	0/1:39:7,32:7:252:32:1125:-89.8159,0,-11.2888	1/1:234:5,229:5:180:229:8030:-706.178,-53.889,0	1/1:253:0,253:0:0:253:8894:-800.438,-76.1606,0	1/1:784:1,783:1:36:783:27584:-2478.21,-232.409,0	1/1:343:2,341:2:72:341:11915:-1065.4,-96.4166,0	1/1:120:0,120:0:0:120:4200:-378.189,-36.1236,0	1/1:255:0,255:0:0:255:8867:-798.04,-76.7627,0	1/1:579:2,577:2:68:577:20157:-1807.24,-167.839,0	1/1:66:2,64:2:72:64:2269:-197.634,-13.0313,0	0/1:170:42,128:42:1499:128:4408:-345.724,0,-84.0287	1/1:136:0,136:0:0:136:4776:-429.995,-40.9401,0	1/1:157:0,157:0:0:157:5514:-496.393,-47.2617,0	0/1:423:100,323:100:3558:323:11287:-888.392,0,-193.093	0/1:659:184,475:184:6561:475:16772:-1310.78,0,-392.194	1/1:362:0,362:0:0:362:12758:-1148.07,-108.973,0	1/1:393:1,392:1:3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chr12	9639532	.	C	T	76270	PASS	AB=0.432773;ABP=435.405;AC=45;AF=0.239362;AN=188;AO=4794;CIGAR=1X;DP=21430;DPB=21430;DPRA=1.40806;EPP=10404.4;EPPR=35993;GTI=1;LEN=1;MEANALT=1.21053;MQM=59.9186;MQMR=59.9892;NS=94;NUMALT=1;ODDS=4.19094;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170946;QR=594010;RO=16614;RPL=0;RPP=10413;RPPR=36010.4;RPR=4794;RUN=1;SAF=1;SAP=10404.4;SAR=4793;SRF=2;SRP=36062.5;SRR=16612;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:45:18,27:18:639:27:945:-71.8159,0,-44.2919	0/0:320:320,0:320:11472:0:0:0,-96.3296,-1032.35	0/0:185:185,0:185:6616:0:0:0,-55.6905,-595.518	0/0:425:417,7:417:14968:7:248:0,-105.332,-1324.18	0/0:77:74,3:74:2645:3:108:0,-13.1041,-228.22	0/0:68:68,0:68:2425:0:0:0,-20.47,-218.504	0/1:267:127,140:127:4556:140:4995:-369.313,0,-329.83	0/0:232:232,0:232:8275:0:0:0,-69.839,-744.761	0/1:142:70,71:70:2488:71:2513:-183.785,0,-181.535	0/0:434:432,1:432:15418:1:36:0,-127.108,-1383.73	0/0:223:223,0:223:7975:0:0:0,-67.1297,-717.773	0/0:132:132,0:132:4704:0:0:0,-39.736,-423.514	0/0:149:149,0:149:5314:0:0:0,-44.8535,-478.287	0/0:220:220,0:220:7858:0:0:0,-66.2266,-707.248	0/1:109:60,49:60:2156:49:1741:-124.161,0,-161.495	0/1:114:56,58:56:2008:58:2079:-152.834,0,-146.676	0/0:306:306,0:306:10923:0:0:0,-92.1152,-982.97	0/1:231:101,130:101:3587:130:4638:-348.046,0,-253.498	0/1:140:68,72:68:2423:72:2572:-189.586,0,-176.181	0/1:514:316,197:316:11303:197:7036:-478.512,0,-862.362	0/1:397:270,127:270:9661:127:4518:-287.276,0,-749.931	0/1:275:115,160:115:4113:160:5711:-431.11,0,-287.57	0/1:71:37,34:37:1328:34:1197:-86.6603,0,-98.4491	0/1:163:144,19:144:5149:19:684:-12.8224,0,-414.482	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/1:820:499,321:499:17883:321:11496:-787.658,0,-1362.22	0/1:334:141,191:141:5064:191:6773:-509.328,0,-355.601	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/1:438:257,181:257:9191:181:6420:-446.04,0,-695.297	0/1:400:208,192:208:7436:192:6845:-495.696,0,-548.872	0/0:218:215,0:215:7656:0:0:0,-64.7214,-688.714	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/1:61:51,10:51:1828:10:360:-14.3815,0,-146.438	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:33:20,13:20:720:13:464:-32.1635,0,-55.1948	0/0:494:494,0:494:17673:0:0:0,-148.709,-1590.14	0/0:269:269,0:269:9641:0:0:0,-80.9771,-867.638	0/1:193:102,91:102:3652:91:3224:-232.283,0,-270.785	0/1:8:1,7:1:36:7:243:-19.7992,0,-1.19003	0/1:216:102,114:102:3639:114:4052:-299.845,0,-262.693	0/0:126:126,0:126:4492:0:0:0,-37.9298,-404.449	0/1:200:108,92:108:3859:92:3300:-236.956,0,-287.299	0/1:302:179,123:179:6402:123:4406:-305.801,0,-485.357	0/0:195:194,0:194:6927:0:0:0,-58.3998,-622.647	0/1:149:95,54:95:3404:54:1936:-129.663,0,-261.721	0/1:150:71,79:71:2539:79:2801:-207.066,0,-183.606	0/1:269:127,141:127:4528:141:5021:-370.998,0,-326.651	0/0:252:249,1:249:8889:1:36:0,-72.019,-796.375	0/0:513:510,1:510:18291:1:36:0,-150.588,-1642.17	0/0:381:381,0:381:13636:0:0:0,-114.692,-1227.02	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:338:202,136:202:7222:136:4863:-336.075,0,-548.286	0/1:79:49,30:49:1752:30:1072:-73.0111,0,-134.183	0/0:83:83,0:83:2962:0:0:0,-24.9855,-266.812	0/0:100:99,1:99:3533:1:36:0,-26.5047,-314.572	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:107:79,28:79:2840:28:1004:-58.4657,0,-223.627	0/1:174:92,82:92:3296:82:2948:-213.174,0,-244.48	0/0:383:382,1:382:13691:1:36:0,-111.696,-1228.37	0/0:11:11,0:11:384:0:0:0,-3.31133,-34.8947	0/1:188:142,46:142:5060:46:1640:-91.2794,0,-398.951	0/0:485:476,8:476:16997:8:280:0,-120.482,-1503.83	0/1:172:83,89:83:2956:89:3204:-236.804,0,-214.495	0/0:90:90,0:90:3228:0:0:0,-27.0927,-290.742	0/1:708:420,288:420:15044:288:10292:-712.963,0,-1140.18	0/1:376:178,196:178:6377:196:6998:-516.939,0,-461.072	0/0:122:122,0:122:4362:0:0:0,-36.7257,-392.753	0/0:145:145,0:145:5200:0:0:0,-43.6493,-468.138	0/0:380:380,0:380:13561:0:0:0,-114.391,-1220.28	0/1:81:43,38:43:1548:38:1364:-98.6773,0,-115.23	0/0:194:193,1:193:6879:1:36:0,-54.8015,-615.581	0/1:300:146,154:146:5223:154:5495:-404.311,0,-379.899	0/0:439:439,0:439:15665:0:0:0,-132.152,-1409.55	0/0:376:375,0:375:13391:0:0:0,-112.886,-1204.77	0/1:293:179,114:179:6420:114:4073:-278.532,0,-489.684	0/1:829:509,318:509:18145:318:11370:-773.853,0,-1383.34	0/1:40:26,14:26:932:14:504:-33.6569,0,-72.1577	0/0:230:230,0:230:8247:0:0:0,-69.2369,-742.238	0/0:256:255,1:255:9097:1:36:0,-73.4654,-815.107	0/0:360:359,1:359:12866:1:36:0,-104.773,-1154.15	0/0:214:213,0:213:7615:0:0:0,-64.1194,-685.028	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:191:110,81:110:3921:81:2864:-200.501,0,-295.586	0/0:348:348,0:348:12448:0:0:0,-104.758,-1120.15	0/1:67:34,33:34:1220:33:1184:-86.6993,0,-89.9378	0/1:170:108,62:108:3839:62:2198:-146.91,0,-294.533	0/0:137:137,0:137:4878:0:0:0,-41.2411,-439.166	0/0:156:156,0:156:5576:0:0:0,-46.9607,-501.964	0/1:426:266,160:266:9492:160:5707:-385.502,0,-725.997	0/1:420:221,199:221:7895:199:7020:-505.434,0,-584.142	0/0:174:173,1:173:6176:1:36:0,-48.7809,-552.339	0/0:183:183,0:183:6527:0:0:0,-55.0885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chr12	9642422	.	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chr12	10643064	.	G	C	335391	PASS	AB=0.516929;ABP=18.6704;AC=147;AF=0.781915;AN=188;AO=12357;CIGAR=1X;DP=15421;DPB=15421;DPRA=0;EPP=26801.2;EPPR=6623.83;GTI=1;LEN=1;MEANALT=1.11702;MQM=59.9073;MQMR=59.9524;NS=94;NUMALT=1;ODDS=0.505875;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=436524;QR=106842;RO=3049;RPL=6624;RPP=142.518;RPPR=30.0914;RPR=5733;RUN=1;SAF=6622;SAP=141.268;SAR=5735;SRF=1622;SRP=30.0914;SRR=1427;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:92:41,51:41:1412:51:1795:-134.137,0,-99.6753	1/1:266:0,266:0:0:266:9387:-844.787,-80.074,0	0/1:205:87,118:87:3046:118:4149:-311.879,0,-212.656	1/1:266:0,266:0:0:266:9434:-849.025,-80.074,0	0/1:99:51,48:51:1801:48:1703:-123.753,0,-132.568	0/1:59:28,31:28:1008:31:1102:-81.7288,0,-73.2756	1/1:292:2,290:2:72:290:10233:-914.059,-81.064,0	0/1:252:112,138:112:3924:138:4904:-365.896,0,-277.733	1/1:160:1,159:1:36:159:5649:-504.92,-44.5665,0	1/1:170:0,170:0:0:170:6036:-543.346,-51.1751,0	1/1:163:0,163:0:0:163:5744:-517.078,-49.0679,0	1/1:163:0,163:0:0:163:5731:-515.914,-49.0679,0	1/1:181:0,181:0:0:181:6357:-572.224,-54.4864,0	1/1:202:0,202:0:0:202:7042:-633.844,-60.8081,0	1/1:138:0,138:0:0:138:4897:-440.839,-41.5421,0	1/1:151:0,151:0:0:151:5258:-473.232,-45.4555,0	1/1:174:0,174:0:0:174:6135:-552.236,-52.3792,0	1/1:166:0,166:0:0:166:5796:-521.745,-49.971,0	1/1:98:0,98:0:0:98:3499:-315.12,-29.5009,0	0/1:374:168,205:168:5859:205:7300:-544.409,0,-414.784	0/1:346:155,190:155:5412:190:6687:-497.682,0,-382.994	0/1:77:56,21:56:1919:21:743:-43.9964,0,-149.8	1/1:132:0,132:0:0:132:4645:-418.211,-39.736,0	1/1:192:8,184:8:288:184:6538:-562.217,-31.5304,0	1/1:144:0,142:0:0:142:4983:-448.266,-42.7463,0	0/1:404:198,205:198:6892:205:7275:-533.128,0,-498.682	1/1:386:0,384:0:0:384:13673:-1229.98,-115.596,0	1/1:84:0,84:0:0:84:2927:-262.031,-25.2865,0	0/1:384:192,191:192:6729:191:6760:-492.822,0,-490.04	0/1:150:74,76:74:2623:76:2713:-198.481,0,-191.164	1/1:192:0,192:0:0:192:6807:-612.686,-57.7978,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:24:12,12:12:428:12:432:-31.9965,0,-31.6341	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	0/1:17:12,5:12:413:5:176:-11.0675,0,-32.3803	0/1:23:12,11:12:415:11:379:-27.5169,0,-30.7566	0/1:393:189,202:189:6496:202:7107:-521.642,0,-466.59	0/1:116:52,64:52:1821:64:2268:-169.463,0,-129.25	1/1:159:0,159:0:0:159:5484:-493.694,-47.8638,0	0/1:5:3,2:3:108:2:63:-4.478,0,-8.57002	1/1:238:0,238:0:0:238:8470:-762.3,-71.6451,0	1/1:92:0,91:0:0:91:3204:-288.225,-27.3937,0	1/1:175:0,175:0:0:175:6190:-557.096,-52.6803,0	1/1:152:0,152:0:0:152:5337:-480.472,-45.7566,0	0/1:128:64,64:64:2257:64:2234:-162.79,0,-164.86	0/1:146:64,82:64:2225:82:2929:-219.894,0,-156.561	1/1:181:0,181:0:0:181:6411:-577.079,-54.4864,0	1/1:288:0,288:0:0:288:10203:-918.201,-86.6966,0	1/1:144:0,144:0:0:144:5120:-460.942,-43.3483,0	1/1:215:0,215:0:0:215:7577:-681.958,-64.7215,0	0/1:226:111,115:111:3895:115:4085:-299.794,0,-282.711	1/1:22:0,22:0:0:22:777:-70.2504,-6.62266,0	1/1:203:0,203:0:0:203:7208:-648.761,-61.1091,0	1/1:49:0,49:0:0:49:1745:-157.276,-14.7505,0	0/1:18:7,11:7:252:11:383:-29.3814,0,-17.6104	1/1:249:0,248:0:0:248:8810:-792.434,-74.6554,0	1/1:87:0,87:0:0:87:3095:-278.771,-26.1896,0	0/1:30:10,20:10:360:20:712:-55.3758,0,-23.7134	0/1:23:10,13:10:360:13:468:-35.536,0,-25.8206	1/1:91:0,91:0:0:91:3249:-291.845,-27.3937,0	0/1:215:113,102:113:3937:102:3573:-257.026,0,-289.8	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:178:1,177:1:27:177:6265:-561.191,-50.8836,0	0/1:234:100,134:100:3555:134:4747:-356.924,0,-249.714	1/1:150:0,150:0:0:150:5303:-477.373,-45.1545,0	0/1:147:77,70:77:2707:70:2499:-180.911,0,-199.62	0/1:216:101,115:101:3568:115:4056:-300.205,0,-256.305	0/1:91:52,39:52:1847:39:1369:-96.1132,0,-139.114	0/1:69:34,35:34:1191:35:1240:-91.1334,0,-86.7232	0/1:98:52,46:52:1860:46:1634:-117.846,0,-138.179	0/1:190:79,111:79:2762:111:3898:-293.797,0,-191.625	1/1:42:0,42:0:0:42:1495:-134.844,-12.6433,0	0/1:104:43,61:43:1520:61:2163:-163.628,0,-105.785	0/1:94:38,56:38:1356:56:1951:-147.559,0,-94.0437	0/1:383:190,193:190:6706:193:6827:-499.083,0,-488.299	1/1:220:0,220:0:0:220:7836:-705.268,-66.2266,0	0/1:157:82,75:82:2885:75:2657:-192.068,0,-212.465	0/1:179:88,91:88:3066:91:3242:-238.073,0,-222.281	0/1:11:5,6:5:180:6:207:-15.6556,0,-13.2407	1/1:235:2,233:2:72:233:8224:-733.321,-63.9053,0	1/1:172:2,169:2:68:169:6012:-534.714,-45.3716,0	1/1:428:2,426:2:72:426:15081:-1350.12,-122.004,0	1/1:200:0,200:0:0:200:7021:-631.957,-60.206,0	1/1:163:0,163:0:0:163:5803:-522.387,-49.0679,0	1/1:197:0,197:0:0:197:6915:-622.405,-59.3029,0	1/1:275:0,275:0:0:275:9680:-871.161,-82.7833,0	1/1:80:0,80:0:0:80:2796:-251.879,-24.0824,0	0/1:176:89,87:89:3073:87:3084:-224.809,0,-223.818	1/1:160:0,160:0:0:160:5596:-503.759,-48.1648,0	1/1:110:0,110:0:0:110:3818:-343.813,-33.1133,0	0/1:190:85,105:85:2983:105:3650:-271.278,0,-211.503	0/1:141:93,48:93:3284:48:1689:-109.847,0,-253.336	1/1:170:0,170:0:0:170:5992:-539.381,-51.1751,0	1/1:262:0,262:0:0:262:9256:-833.016,-78.8699,0
chr12	10643070	.	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chr12	11101982	.	AGCAA	TGCAA,TGCAG	149180	PASS	AB=0.484218,0.51144;ABP=9.45326,6.3888;AC=147,40;AF=0.781915,0.212766;AN=188;AO=5359,1529;CIGAR=1X4M,1X3M1X;DP=6925;DPB=6933;DPRA=75.25,1.10976;EPP=11639.9,3323.19;EPPR=68.1545;GTI=1;LEN=1,5;MEANALT=1.54348,2.11111;MQM=59.9515,59.8888;MQMR=60;NS=94;NUMALT=2;ODDS=0.528639;PAIRED=0,0;PAIREDR=0;PAO=19,20.5;PQA=666,723;PQR=0;PRO=0.5;QA=191947,54410;QR=1027;RO=30;RPL=0,0;RPP=11639.9,3323.19;RPPR=68.1545;RPR=5359,1529;RUN=1,1;SAF=5359,1529;SAP=11639.9,3323.19;SAR=0,0;SRF=30;SRP=68.1545;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:71:0,42,29:0:0:42,29:1500,1040:-207.478,-85.1848,-72.5416,-122.651,0,-113.921	1/1:67:0,66,1:0:0:66,1:2360,36:-212.24,-19.868,0,-209.302,-16.5707,-209.001	1/2:77:0,40,37:0:0:40,37:1440,1317:-225.193,-107.694,-95.6526,-117.857,0,-106.718	1/1:128:1,127,0:1:22:127,0:4552,0:-407.646,-36.3319,0,-407.947,-38.2308,-409.625	1/2:36:0,20,16:0:0:20,16:720,569:-105.477,-46.7258,-40.7052,-59.1082,0,-54.2917	1/2:10:0,5,5:0:0:5,5:180,180:-29.627,-15.0469,-13.5418,-14.9387,0,-13.4336	1/1:74:0,74,0:0:0:74,0:2644,0:-238.148,-22.2762,0,-238.148,-22.2762,-238.148	1/2:72:0,40,32:0:0:40,32:1432,1149:-210.848,-94.0695,-82.0283,-117.136,0,-107.503	1/1:115:0,115,0:0:0:115,0:4120,0:-370.865,-34.6185,0,-370.865,-34.6185,-370.865	1/1:48:0,48,0:0:0:48,0:1708,0:-154.006,-14.4494,0,-154.006,-14.4494,-154.006	1/1:40:0,40,0:0:0:40,0:1432,0:-129.119,-12.0412,0,-129.119,-12.0412,-129.119	1/1:98:0,98,0:0:0:98,0:3524,0:-317.368,-29.5009,0,-317.368,-29.5009,-317.368	1/1:90:2,88,0:2:72:88,0:3160,0:-277.487,-20.2861,0,-278.089,-26.4906,-283.964	1/1:57:0,57,0:0:0:57,0:2044,0:-184.173,-17.1587,0,-184.173,-17.1587,-184.173	1/1:60:1,59,0:1:36:59,0:2124,0:-187.83,-14.4635,0,-188.131,-17.7608,-191.068	1/1:65:0,65,0:0:0:65,0:2328,0:-209.721,-19.567,0,-209.721,-19.567,-209.721	1/1:41:0,41,0:0:0:41,0:1476,0:-133.135,-12.3422,0,-133.135,-12.3422,-133.135	1/1:46:1,45,0:1:36:45,0:1616,0:-141.919,-10.2491,0,-142.22,-13.5464,-145.158	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/2:169:0,80,89:0:0:80,89:2876,3184:-494.627,-259.993,-235.911,-234.992,0,-208.2	1/2:133:0,58,75:0:0:58,75:2080,2683:-388.79,-219.138,-201.678,-170.011,0,-147.433	1/2:125:0,33,91:0:0:33,91:1184,3259:-362.353,-265.777,-255.843,-96.5745,0,-69.1808	1/1:139:0,139,0:0:0:139,0:4965,0:-446.998,-41.8432,0,-446.998,-41.8432,-446.998	1/1:67:0,66,1:0:0:66,1:2367,36:-212.658,-19.868,0,-209.721,-16.5707,-209.42	1/1:89:0,88,1:0:0:88,1:3156,30:-283.964,-26.4906,0,-281.566,-23.7921,-281.265	1/2:188:3,80,105:3:106:80,105:2846,3718:-524.994,-294.229,-278.779,-223.037,0,-200.062	1/1:91:0,91,0:0:0:91,0:3252,0:-292.842,-27.3937,0,-292.842,-27.3937,-292.842	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:166:0,92,74:0:0:92,74:3293,2642:-484.286,-215.751,-188.056,-268.893,0,-246.616	1/2:100:0,51,49:0:0:51,49:1824,1732:-290.146,-141.413,-126.06,-149.089,0,-134.338	1/1:93:1,92,0:1:36:92,0:3292,0:-292.842,-24.3975,0,-293.143,-27.6948,-296.08	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:9:0,4,5:0:0:4,5:144,180:-26.7966,-15.0469,-13.8428,-12.1095,0,-10.6043	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:8:0,5,3:0:0:5,3:180,103:-23.404,-8.70651,-7.20136,-15.0469,0,-14.1438	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/2:203:0,104,98:0:0:104,98:3725,3478:-587.154,-283.368,-252.061,-303.782,0,-274.281	1/2:150:1,77,72:1:21:77,72:2744,2565:-430.723,-207.628,-186.035,-221.953,0,-201.866	1/1:33:0,33,0:0:0:33,0:1184,0:-106.868,-9.93399,0,-106.868,-9.93399,-106.868	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:79:0,79,0:0:0:79,0:2836,0:-255.419,-23.7814,0,-255.419,-23.7814,-255.419	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:137:0,137,0:0:0:137,0:4916,0:-442.59,-41.2411,0,-442.59,-41.2411,-442.59	1/1:50:0,50,0:0:0:50,0:1796,0:-161.922,-15.0515,0,-161.922,-15.0515,-161.922	1/2:50:0,29,21:0:0:29,21:1036,749:-145.882,-61.4143,-52.6845,-84.824,0,-78.5024	1/2:66:0,29,37:0:0:29,37:1040,1317:-192.522,-107.695,-98.9646,-85.1845,0,-74.0464	1/1:106:0,106,0:0:0:106,0:3796,0:-341.838,-31.9092,0,-341.838,-31.9092,-341.838	1/1:140:1,139,0:1:36:139,0:4976,0:-444.38,-38.5459,0,-444.681,-41.8432,-447.619	1/1:87:1,86,0:1:30:86,0:3084,0:-274.788,-23.19,0,-275.089,-25.8886,-277.487	1/1:61:2,59,0:2:72:59,0:2108,0:-183.153,-11.5261,0,-183.755,-17.7608,-189.63	1/2:129:0,59,70:0:0:59,70:2108,2485:-374.696,-202.832,-185.071,-172.22,0,-151.148	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:87:2,85,0:2:72:85,0:3044,0:-267.351,-19.3529,0,-267.953,-25.5876,-273.828	1/1:42:0,42,0:0:0:42,0:1500,0:-135.295,-12.6433,0,-135.295,-12.6433,-135.295	1/2:7:0,6,1:0:0:6,1:216,36:-20.9217,-3.29724,-1.49106,-17.9843,0,-17.6833	1/1:118:1,117,0:1:26:117,0:4188,0:-374.502,-32.9217,0,-374.803,-35.2205,-376.841	1/1:45:0,44,1:0:0:44,1:1564,36:-140.692,-13.2453,0,-137.754,-9.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chr12	11347769	.	A	G	37508	PASS	AB=0.507984;ABP=3.56509;AC=148;AF=0.787234;AN=188;AO=1405;CIGAR=1X;DP=1903;DPB=1903;DPRA=4.08172;EPP=48.2032;EPPR=214.053;GTI=1;LEN=1;MEANALT=1;MQM=60;MQMR=60;NS=94;NUMALT=1;ODDS=0.179924;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50290;QR=17863;RO=498;RPL=617;RPP=48.2032;RPPR=214.053;RPR=788;RUN=1;SAF=0;SAP=3053.93;SAR=1405;SRF=0;SRP=1084.4;SRR=498;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:15:6,9:6:216:9:324:-24.9904,0,-15.2751	1/1:25:0,25:0:0:25:888:-80.239,-7.52575,0	0/1:14:10,4:10:360:4:144:-9.0992,0,-28.5299	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:13:0,13:0:0:13:455:-41.282,-3.91339,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:7:0,7:0:0:7:243:-22.2075,-2.10721,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:32:19,13:19:675:13:464:-32.4645,0,-51.444	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:48:24,24:24:864:24:864:-63.6331,0,-63.6331	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	0/1:31:11,20:11:388:20:720:-55.7968,0,-25.9254	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:26:16,10:16:576:10:360:-24.9175,0,-44.3482	0/1:30:9,21:9:324:21:756:-59.3363,0,-20.475	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:69:29,40:29:1032:40:1418:-107.145,0,-72.4224	0/1:115:54,61:54:1944:61:2178:-161.668,0,-140.618	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:25:9,16:9:324:16:576:-44.6492,0,-21.9801	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:29:13,16:13:468:16:576:-43.4451,0,-33.7298	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:52:24,28:24:860:28:999:-74.5709,0,-62.0683	1/1:55:0,55:0:0:55:1925:-173.523,-16.5567,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:35:8,27:8:288:27:972:-77.2619,0,-15.7314	0/1:24:12,12:12:432:12:428:-31.6341,0,-31.9965	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:23:9,14:9:315:14:504:-38.7744,0,-21.7635	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/1:31:21,10:21:756:10:360:-23.4124,0,-59.0353	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	1/1:46:0,46:0:0:46:1633:-147.257,-13.8474,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/1:51:29,22:29:1040:22:788:-55.8923,0,-78.5618	1/1:53:0,53:0:0:53:1885:-169.927,-15.9546,0	0/1:12:6,6:6:201:6:216:-16.1782,0,-14.8047	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:97:54,43:54:1940:43:1548:-110.413,0,-145.676	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:21:10,11:10:360:11:392:-29.2984,0,-26.4227	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0
chr12	11571338	.	CAGCT	TAGCT	381439	PASS	AB=0.498641;ABP=3.12835;AC=148;AF=0.787234;AN=188;AO=14018;CIGAR=1X4M;DP=17777;DPB=17778.4;DPRA=0;EPP=30442.7;EPPR=8030.95;GTI=2;LEN=1;MEANALT=1.54255;MQM=59.9471;MQMR=59.9738;NS=94;NUMALT=1;ODDS=1.16251;PAIRED=0;PAIREDR=0;PAO=3.5;PQA=124;PQR=0;PRO=0;QA=497432;QR=128792;RO=3701;RPL=7438;RPP=117.047;RPPR=72.038;RPR=6580;RUN=1;SAF=7438;SAP=117.047;SAR=6580;SRF=2023;SRP=72.8453;SRR=1678;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:109:54,55:54:1846:55:1942:-142.243,0,-133.604	1/1:176:0,176:0:0:176:6282:-565.475,-52.9813,0	0/1:261:118,143:118:4154:143:5060:-376.973,0,-295.369	1/1:377:0,377:0:0:377:13346:-1200.95,-113.488,0	0/1:113:51,61:51:1795:61:2184:-162.751,0,-127.758	0/1:75:32,43:32:1121:43:1519:-114.426,0,-78.6216	1/1:138:1,137:1:36:137:4899:-437.397,-37.9439,0	0/1:266:115,151:115:3989:151:5349:-401.409,0,-279.02	1/1:262:0,262:0:0:262:9241:-831.404,-78.8699,0	1/1:206:0,205:0:0:205:7308:-657.415,-61.7112,0	1/1:159:0,157:0:0:157:5566:-500.432,-47.2617,0	1/1:255:1,254:1:36:254:8886:-796.143,-73.1644,0	1/1:201:0,200:0:0:200:7115:-640.213,-60.206,0	1/1:136:0,135:0:0:135:4764:-428.563,-40.6391,0	1/1:195:1,193:1:35:193:6848:-612.522,-55.256,0	1/1:149:1,148:1:35:148:5264:-470.402,-41.3548,0	1/1:119:0,119:0:0:119:4194:-377.644,-35.8226,0	1/1:94:0,93:0:0:93:3298:-296.68,-27.9958,0	1/1:115:0,114:0:0:114:4039:-363.329,-34.3174,0	0/1:253:134,119:134:4687:119:4233:-304.99,0,-345.84	0/1:345:162,182:162:5638:182:6439:-475.749,0,-403.704	0/1:158:90,68:90:3147:68:2395:-168.243,0,-235.898	1/1:168:0,167:0:0:167:5958:-535.988,-50.272,0	1/1:179:5,174:5:180:174:6171:-538.938,-37.3323,0	1/1:141:0,141:0:0:141:5006:-450.691,-42.4452,0	0/1:444:211,232:211:7337:232:8251:-608.888,0,-526.685	1/1:571:2,566:2:68:566:20171:-1808.28,-164.861,0	1/1:90:0,89:0:0:89:3184:-286.47,-26.7917,0	0/1:550:238,311:238:8338:311:11014:-825.443,0,-584.835	0/1:162:53,109:53:1823:109:3831:-296.161,0,-115.523	1/1:185:1,184:1:36:184:6525:-583.739,-52.0923,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:7:3,4:3:106:4:135:-10.3753,0,-7.78195	1/1:6:0,1:0:0:1:36:-3.24144,-0.30103,0	0/1:9:7,2:7:247:2:72:-4.12745,0,-19.8636	0/1:6:1,5:1:35:5:176:-14.3788,0,-1.69245	0/1:524:259,261:259:9006:261:9289:-679.155,0,-653.677	0/1:237:119,118:119:4140:118:4187:-305.631,0,-301.451	1/1:137:2,135:2:69:135:4827:-428.032,-34.6886,0	0/1:5:2,3:2:69:3:108:-8.57002,0,-5.04751	1/1:226:0,226:0:0:226:8038:-723.443,-68.0328,0	1/1:106:0,106:0:0:106:3757:-338.329,-31.9092,0	1/1:319:0,319:0:0:319:11319:-1018.6,-96.0286,0	1/1:218:0,217:0:0:217:7724:-694.85,-65.3235,0	0/1:172:104,67:104:3618:67:2396:-164.13,0,-274.065	0/1:157:89,67:89:3098:67:2381:-167.325,0,-231.83	1/1:221:2,217:2:67:217:7746:-690.784,-59.8951,0	1/1:266:4,262:4:133:262:9309:-825.246,-67.7756,0	1/1:191:1,188:1:34:188:6663:-596.397,-53.814,0	1/1:273:1,271:1:36:271:9632:-863.094,-78.5718,0	0/1:238:134,104:134:4651:104:3704:-261.919,0,-347.122	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	1/1:276:0,276:0:0:276:9816:-883.363,-83.0843,0	1/1:76:0,74:0:0:74:2648:-238.177,-22.2762,0	0/1:12:9,3:9:310:3:100:-5.71808,0,-24.6204	1/1:198:4,193:4:144:193:6863:-604.411,-46.3491,0	1/1:89:0,89:0:0:89:3118:-280.842,-26.7917,0	0/1:14:8,6:8:277:6:216:-15.5761,0,-21.0519	0/1:16:7,8:7:251:8:288:-21.3921,0,-18.0628	1/1:166:0,165:0:0:165:5856:-526.795,-49.67,0	0/1:245:133,111:133:4649:111:3930:-280.084,0,-344.702	1/1:13:0,13:0:0:13:456:-41.3732,-3.91339,0	1/1:315:1,313:1:36:313:11100:-995.249,-91.245,0	0/1:277:131,145:131:4541:145:5141:-379.391,0,-325.533	1/1:119:3,115:3:99:115:4084:-358.514,-26.5916,0	0/1:157:80,77:80:2811:77:2752:-200.661,0,-205.972	0/1:293:136,156:136:4657:156:5531:-409.451,0,-331.159	0/1:252:153,99:153:5328:99:3489:-238.356,0,-403.809	0/1:86:39,45:39:1370:45:1590:-117.81,0,-98.0194	0/1:155:65,89:65:2273:89:3130:-235.207,0,-158.115	0/1:145:90,55:90:3121:55:1963:-133.295,0,-237.473	1/1:43:0,43:0:0:43:1514:-136.543,-12.9443,0	0/1:189:88,101:88:3035:101:3546:-262.453,0,-216.492	0/1:177:93,83:93:3205:83:2967:-214.01,0,-235.427	0/1:319:151,166:151:5254:166:5909:-436.135,0,-377.224	1/1:347:0,347:0:0:347:12287:-1105.68,-104.457,0	0/1:203:107,96:107:3731:96:3432:-247.983,0,-274.891	0/1:228:118,110:118:4119:110:3890:-281.663,0,-302.268	0/1:28:17,11:17:581:11:396:-27.5539,0,-44.1824	1/1:228:0,228:0:0:228:8156:-733.961,-68.6348,0	1/1:219:0,219:0:0:219:7818:-703.645,-65.9256,0	1/1:358:0,358:0:0:358:12676:-1140.57,-107.769,0	1/1:188:0,186:0:0:186:6660:-599.085,-55.9916,0	1/1:155:0,155:0:0:155:5434:-489.187,-46.6597,0	1/1:217:0,216:0:0:216:7691:-691.747,-65.0225,0	1/1:380:2,377:2:72:377:13305:-1190.32,-107.613,0	1/1:91:0,91:0:0:91:3243:-292.087,-27.3937,0	1/1:217:1,216:1:36:216:7674:-687.104,-61.7252,0	1/1:219:0,219:0:0:219:7762:-698.605,-65.9256,0	1/1:95:1,93:1:36:93:3282:-292.004,-25.0584,0	0/1:223:101,121:101:3495:121:4217:-312.53,0,-247.58	0/1:241:161,79:161:5607:79:2791:-178.931,0,-432.271	1/1:238:0,238:0:0:238:8481:-763.292,-71.6451,0	1/1:278:0,277:0:0:277:9809:-882.407,-83.3853,0
chr12	11571345	.	G	A	81896.6	PASS	AB=0.495467;ABP=4.3096;AC=40;AF=0.212766;AN=188;AO=3629;CIGAR=1X;DP=17642;DPB=17642;DPRA=0.973063;EPP=7883.28;EPPR=30412.3;GTI=1;LEN=1;MEANALT=1.12;MQM=59.9631;MQMR=59.9606;NS=94;NUMALT=1;ODDS=2.31047;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=128957;QR=497241;RO=14004;RPL=1949;RPP=46.3087;RPPR=76.8348;RPR=1680;RUN=1;SAF=1949;SAP=46.3087;SAR=1680;SRF=7347;SRP=76.8348;SRR=6657;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:105:52,53:52:1868:53:1891:-138.859,0,-136.791	0/0:181:181,0:181:6443:0:0:0,-54.4864,-579.958	0/1:260:142,118:142:5041:118:4236:-303.039,0,-375.566	0/0:374:374,0:374:13320:0:0:0,-112.585,-1198.54	0/1:114:62,52:62:2223:52:1842:-131.741,0,-166.016	0/1:76:43,33:43:1518:33:1152:-81.1051,0,-114.033	0/0:135:135,0:135:4774:0:0:0,-40.639,-429.818	0/1:266:150,116:150:5333:116:4124:-291.082,0,-400.03	0/0:257:256,0:256:9029:0:0:0,-77.0637,-812.238	0/0:208:208,0:208:7413:0:0:0,-62.6142,-667.219	0/0:155:155,0:155:5526:0:0:0,-46.6596,-497.467	0/0:247:247,0:247:8678:0:0:0,-74.3544,-781.024	0/0:200:200,0:200:7083:0:0:0,-60.206,-637.537	0/0:133:133,0:133:4694:0:0:0,-40.037,-422.621	0/0:196:196,0:196:6977:0:0:0,-59.0019,-627.786	0/0:151:150,0:150:5318:0:0:0,-45.1545,-478.397	0/0:121:121,0:121:4267:0:0:0,-36.4246,-384.209	0/0:96:96,0:96:3404:0:0:0,-28.8989,-306.574	0/0:115:115,0:115:4076:0:0:0,-34.6184,-366.958	0/1:249:120,129:120:4233:129:4598:-339.029,0,-306.193	0/1:337:184,153:184:6549:153:5394:-384.146,0,-488.046	0/1:156:67,89:67:2380:89:3158:-237.485,0,-167.495	0/0:167:167,0:167:5934:0:0:0,-50.272,-534.17	0/0:182:177,5:177:6306:5:180:0,-38.2354,-550.994	0/0:142:142,0:142:5057:0:0:0,-42.7463,-455.276	0/1:433:228,205:228:8151:205:7310:-527.602,0,-603.257	0/0:573:573,0:573:20407:0:0:0,-172.49,-1835.93	0/0:90:90,0:90:3165:0:0:0,-27.0927,-285.066	0/1:542:309,233:309:10974:233:8279:-581.968,0,-824.299	0/1:161:107,53:107:3780:53:1891:-121.942,0,-291.876	0/0:189:188,1:188:6654:1:36:0,-53.2964,-595.343	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:8:1,7:1:36:7:244:-19.8912,0,-1.19003	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:517:264,253:264:9384:253:9013:-655.473,0,-688.893	0/1:232:116,116:116:4091:116:4113:-300.515,0,-298.451	0/0:140:139,1:139:4919:1:36:0,-38.5459,-439.266	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/0:221:221,0:221:7877:0:0:0,-66.5276,-708.959	0/0:106:106,0:106:3769:0:0:0,-31.9092,-339.407	0/0:315:315,0:315:11214:0:0:0,-94.8244,-1009.15	0/0:220:220,0:220:7817:0:0:0,-66.2266,-703.456	0/1:174:69,105:69:2436:105:3724:-282.983,0,-167.115	0/1:155:69,86:69:2453:86:3045:-227.621,0,-174.363	0/0:222:220,2:220:7831:2:72:0,-59.9919,-697.915	0/0:267:265,2:265:9433:2:72:0,-73.5383,-841.991	0/0:188:188,0:188:6673:0:0:0,-56.5936,-600.648	0/0:272:270,1:270:9632:1:36:0,-78.3407,-863.025	0/1:238:104,134:104:3693:134:4758:-356.736,0,-260.925	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:274:274,0:274:9733:0:0:0,-82.4822,-875.925	0/0:75:75,0:75:2667:0:0:0,-22.5772,-240.276	0/1:12:3,9:3:99:9:324:-25.8935,0,-5.62422	0/0:192:188,4:188:6682:4:144:0,-44.4841,-588.128	0/0:88:88,0:88:3098:0:0:0,-26.4906,-279.046	0/1:13:6,7:6:212:7:244:-18.386,0,-15.5114	0/1:17:9,8:9:316:8:284:-20.7858,0,-23.6613	0/0:168:168,0:168:5992:0:0:0,-50.573,-539.386	0/1:244:111,133:111:3933:133:4726:-351.981,0,-280.713	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:309:307,2:307:10873:2:72:0,-86.1815,-971.633	0/1:274:145,129:145:5117:129:4588:-330.604,0,-378.192	0/0:116:113,3:113:3996:3:104:0,-25.2167,-350.124	0/1:159:78,81:78:2791:81:2876:-211.213,0,-203.566	0/1:285:156,129:156:5533:129:4587:-327.202,0,-411.461	0/1:250:98,152:98:3486:152:5417:-411.469,0,-238.688	0/1:83:43,40:43:1536:40:1376:-99.1452,0,-113.548	0/1:152:85,66:85:3020:66:2325:-163.783,0,-226.303	0/1:143:57,86:57:2035:86:3052:-231.861,0,-140.374	0/0:43:43,0:43:1518:0:0:0,-12.9443,-136.903	0/1:188:103,84:103:3664:84:2979:-211.69,0,-273.311	0/1:174:81,93:81:2882:93:3316:-246.278,0,-207.237	0/1:314:166,148:166:5927:148:5280:-380.812,0,-439.016	0/0:342:342,0:342:12181:0:0:0,-102.952,-1096.14	0/1:204:97,106:97:3432:106:3787:-279.56,0,-247.625	0/1:230:113,117:113:4025:117:4154:-304.808,0,-293.201	0/1:28:11,17:11:392:17:596:-45.5389,0,-27.1912	0/0:226:226,0:226:8004:0:0:0,-68.0328,-720.299	0/0:215:215,0:215:7586:0:0:0,-64.7214,-682.78	0/0:349:349,0:349:12406:0:0:0,-105.059,-1116.27	0/0:187:187,0:187:6616:0:0:0,-56.2926,-595.521	0/0:155:154,0:154:5472:0:0:0,-46.3586,-492.399	0/0:216:216,0:216:7675:0:0:0,-65.0225,-690.782	0/0:380:380,0:380:13448:0:0:0,-114.391,-1210.12	0/0:91:91,0:91:3238:0:0:0,-27.3937,-291.637	0/0:216:216,0:216:7663:0:0:0,-65.0225,-689.709	0/0:216:216,0:216:7642:0:0:0,-65.0225,-687.809	0/0:95:94,1:94:3325:1:36:0,-24.9996,-295.868	0/1:222:120,101:120:4239:101:3585:-255.97,0,-314.802	0/1:241:84,157:84:2999:157:5577:-429.509,0,-197.593	0/0:240:240,0:240:8540:0:0:0,-72.2472,-768.601	0/0:272:272,0:272:9667:0:0:0,-81.8802,-869.988
chr12	11832565	.	A	G	36533	PASS	AB=0.52665;ABP=28.2419;AC=40;AF=0.212766;AN=188;AO=2171;CIGAR=1X;DP=8747;DPB=8747;DPRA=1.36563;EPP=4717.28;EPPR=14211;GTI=2;LEN=1;MEANALT=1;MQM=59.9576;MQMR=59.9819;NS=94;NUMALT=1;ODDS=1.63565;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=77186;QR=235435;RO=6575;RPL=0;RPP=4717.28;RPPR=14211;RPR=2171;RUN=1;SAF=0;SAP=4717.28;SAR=2171;SRF=0;SRP=14280.4;SRR=6575;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:22,26:22:792:26:928:-69.3888,0,-57.1562	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/1:285:119,166:119:4271:166:5902:-445.5,0,-298.772	0/0:246:245,1:245:8787:1:36:0,-70.4551,-787.217	0/1:56:24,32:24:864:32:1140:-86.0515,0,-61.2249	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.307	0/1:136:77,59:77:2744:59:2108:-149.049,0,-206.26	0/0:106:106,0:106:3789:0:0:0,-31.9092,-341.207	0/0:51:51,0:51:1811:0:0:0,-15.3525,-163.271	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:115:115,0:115:4100:0:0:0,-34.6184,-369.184	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.475	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:71:71,0:71:2538:0:0:0,-21.3731,-228.67	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:148:78,70:78:2793:70:2499:-180.598,0,-207.056	0/1:230:119,111:119:4280:111:3938:-285.375,0,-316.139	0/1:162:49,113:49:1752:113:3999:-311.332,0,-109.197	0/0:103:103,0:103:3693:0:0:0,-31.0061,-332.57	0/0:61:57,4:57:2044:4:144:0,-5.04921,-170.918	0/0:85:85,0:85:3039:0:0:0,-25.5875,-273.74	0/1:249:103,146:103:3674:146:5177:-391.116,0,-255.907	0/0:161:161,0:161:5768:0:0:0,-48.4658,-519.179	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:261:134,127:134:4820:127:4503:-326.869,0,-355.384	0/1:115:55,60:55:1952:60:2133:-157.488,0,-141.335	0/0:110:106,4:106:3800:4:140:0,-20.1687,-329.253	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:27:12,15:12:432:15:540:-40.8087,0,-31.0934	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:226:100,126:100:3588:126:4462:-333.72,0,-255.093	0/1:109:52,57:52:1872:57:2040:-151.06,0,-135.947	0/0:56:56,0:56:1988:0:0:0,-16.8577,-179.192	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:108:108,0:108:3856:0:0:0,-32.5112,-347.234	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/0:214:214,0:214:7652:0:0:0,-64.4204,-688.669	0/0:84:83,1:83:2969:1:36:0,-21.6882,-263.843	0/1:77:43,34:43:1526:34:1167:-82.1481,0,-114.452	0/1:61:23,38:23:819:38:1355:-103.887,0,-55.6687	0/0:128:128,0:128:4577:0:0:0,-38.5318,-412.094	0/0:155:154,0:154:5505:0:0:0,-46.3586,-495.215	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/0:149:149,0:149:5340:0:0:0,-44.8535,-480.732	0/1:126:58,68:58:2069:68:2434:-181.385,0,-148.548	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:104:104,0:104:3710:0:0:0,-31.3071,-334.102	0/0:48:48,0:48:1720:0:0:0,-14.4494,-154.595	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:153:151,2:151:5403:2:72:0,-39.2209,-479.434	0/0:46:46,0:46:1627:0:0:0,-13.8474,-146.718	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:116:61,55:61:2192:55:1940:-139.954,0,-162.626	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:193:192,1:192:6860:1:36:0,-54.5005,-613.87	0/1:192:101,91:101:3624:91:3249:-234.832,0,-268.555	0/0:53:51,2:51:1823:2:72:0,-9.11787,-157.514	0/1:106:50,56:50:1796:56:1981:-146.653,0,-130.013	0/1:183:84,99:84:3012:99:3536:-263.359,0,-216.222	0/1:145:49,96:49:1751:96:3427:-264.994,0,-114.224	0/1:47:22,25:22:792:25:883:-65.639,0,-57.4573	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/1:58:23,35:23:828:35:1234:-93.9029,0,-57.3844	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:150:77,73:77:2728:73:2603:-189.364,0,-200.608	0/1:73:31,42:31:1112:42:1482:-111.697,0,-78.4162	0/1:162:85,77:85:3052:77:2740:-197.908,0,-226.142	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016	0/1:166:82,84:82:2944:84:3008:-220.98,0,-215.222	0/1:96:58,38:58:2084:38:1356:-93.4416,0,-158.931	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:81:81,0:81:2916:0:0:0,-24.3834,-262.674	0/0:152:152,0:152:5421:0:0:0,-45.7566,-488.02	0/0:159:159,0:159:5703:0:0:0,-47.8638,-513.381	0/0:73:73,0:73:2619:0:0:0,-21.9752,-235.957	0/0:82:82,0:82:2943:0:0:0,-24.6845,-265.103	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.836	0/0:150:148,2:148:5320:2:72:0,-38.3178,-472.095	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.574	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	0/0:39:39,0:39:1389:0:0:0,-11.7402,-125.307	0/1:97:50,47:50:1800:47:1659:-120.396,0,-133.082	0/1:82:37,45:37:1313:45:1607:-120.233,0,-93.7852	0/0:130:130,0:130:4651:0:0:0,-39.1339,-418.752	0/0:106:106,0:106:3812:0:0:0,-31.9092,-343.276
chr12	12342834	.	A	T	13693.9	PASS	AB=0.434093;ABP=79.1474;AC=36;AF=0.195652;AN=184;AO=882;CIGAR=1X;DP=4573;DPB=4573;DPRA=1.39331;EPP=1918.25;EPPR=8015.74;GTI=1;LEN=1;MEANALT=1.02381;MQM=59.6122;MQMR=59.9881;NS=92;NUMALT=1;ODDS=4.26868;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31479;QR=131786;RO=3690;RPL=0;RPP=1918.25;RPPR=8015.74;RPR=882;RUN=1;SAF=882;SAP=1918.25;SAR=0;SRF=3690;SRP=8015.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:55:41,14:41:1438:14:504:-28.8618,0,-113.155	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:79:63,16:63:2245:16:576:-28.369,0,-178.53	0/0:98:98,0:98:3497:0:0:0,-29.5009,-314.939	0/1:32:25,7:25:885:7:248:-13.0266,0,-70.3336	0/1:27:19,8:19:680:8:288:-18.1396,0,-53.4014	0/0:68:67,1:67:2397:1:36:0,-16.8718,-212.387	0/1:108:59,49:59:2100:49:1752:-125.452,0,-156.759	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.082	0/0:39:39,0:39:1370:0:0:0,-11.7402,-123.595	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:34:34,0:34:1205:0:0:0,-10.235,-108.754	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:53:35,18:35:1252:18:648:-42.625,0,-97.0305	0/1:65:38,27:38:1345:27:972:-68.2263,0,-101.781	0/1:45:25,20:25:900:20:712:-50.8603,0,-67.7747	0/0:87:86,1:86:3084:1:36:0,-22.5913,-274.189	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/1:133:72,61:72:2562:61:2176:-156.067,0,-190.784	0/0:129:128,1:128:4566:1:36:0,-35.2346,-407.505	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:109:60,49:60:2145:49:1740:-124.047,0,-160.503	0/1:64:40,24:40:1421:24:849:-57.4527,0,-108.919	0/0:55:55,0:55:1965:0:0:0,-16.5566,-177.123	.:.:.:.:.:.:.:.	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:31:24,7:24:864:7:248:-13.3323,0,-68.7506	0/1:11:8,3:8:284:3:108:-6.7554,0,-22.592	0/1:88:54,34:54:1940:34:1220:-83.4737,0,-148.386	0/1:97:64,33:64:2285:33:1184:-77.6684,0,-176.71	0/0:22:22,0:22:777:0:0:0,-6.62266,-70.2504	.:.:.:.:.:.:.:.	0/0:63:63,0:63:2238:0:0:0,-18.9649,-201.68	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:175:175,0:175:6242:0:0:0,-52.6802,-561.874	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:37:23,14:23:828:14:504:-34.5572,0,-63.706	0/1:67:29,38:29:1044:38:1360:-102.531,0,-74.1058	0/0:70:70,0:70:2482:0:0:0,-21.0721,-223.631	0/0:82:82,0:82:2924:0:0:0,-24.6845,-263.393	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.551	0/1:35:17,18:17:612:18:648:-48.1158,0,-44.8774	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:62:62,0:62:2228:0:0:0,-18.6639,-200.782	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:61:60,1:60:2156:1:36:0,-14.7646,-190.709	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:11:3,8:3:108:8:284:-22.5911,0,-6.76384	0/0:49:49,0:49:1729:0:0:0,-14.7505,-155.893	0/1:73:42,31:42:1508:31:1112:-78.4115,0,-114.039	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:86:45,40:45:1589:40:1432:-102.96,0,-117.351	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/1:30:15,15:15:536:15:521:-38.1854,0,-39.5439	0/1:72:38,34:38:1353:34:1224:-88.7905,0,-100.394	0/1:87:29,58:29:995:58:2058:-159.209,0,-63.6638	0/1:17:9,8:9:324:8:288:-21.1452,0,-24.3883	0/1:15:9,6:9:324:6:216:-15.2668,0,-24.9904	0/1:48:27,21:27:972:21:756:-53.9178,0,-73.3485	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:92:39,53:39:1392:53:1862:-140.136,0,-97.8843	0/1:39:26,13:26:917:13:445:-28.627,0,-71.1026	0/1:98:51,47:51:1832:47:1677:-121.713,0,-135.66	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/1:59:34,25:34:1186:25:900:-63.5602,0,-89.28	0/1:28:14,14:14:500:14:496:-36.5161,0,-36.9073	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:55:54,1:54:1913:1:36:0,-12.9584,-168.847	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:102:102,0:102:3652:0:0:0,-30.7051,-328.884	0/0:48:47,1:47:1692:1:36:0,-10.8512,-148.969	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.215	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4891	0/1:66:37,29:37:1294:29:1031:-73.2254,0,-96.889	0/1:39:9,30:9:324:30:1080:-85.7684,0,-17.7657	0/0:53:53,0:53:1874:0:0:0,-15.9546,-168.935	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328
chr12	12342886	.	C	T	13563.3	PASS	AB=0.435629;ABP=75.137;AC=36;AF=0.195652;AN=184;AO=878;CIGAR=1X;DP=4555;DPB=4555;DPRA=1.38288;EPP=1909.56;EPPR=7983.17;GTI=1;LEN=1;MEANALT=1.02439;MQM=59.664;MQMR=59.9875;NS=92;NUMALT=1;ODDS=4.25271;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31219;QR=129650;RO=3675;RPL=878;RPP=1909.56;RPPR=7983.17;RPR=0;RUN=1;SAF=878;SAP=1909.56;SAR=0;SRF=3675;SRP=7983.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:54:39,15:39:1384:15:536:-32.0397,0,-108.603	0/0:30:30,0:30:1055:0:0:0,-9.0309,-95.26	0/1:78:62,16:62:2176:16:568:-27.9469,0,-172.624	0/0:98:98,0:98:3457:0:0:0,-29.5009,-311.345	0/1:33:26,7:26:894:7:252:-13.0903,0,-70.8352	0/1:29:19,10:19:676:10:360:-24.0144,0,-52.4381	0/0:65:64,1:64:2265:1:36:0,-15.9687,-200.513	0/1:105:55,50:55:1931:50:1792:-129.953,0,-142.455	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.318	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:37:37,0:37:1298:0:0:0,-11.1381,-117.12	0/0:55:55,0:55:1947:0:0:0,-16.5566,-175.505	0/0:42:42,0:42:1464:0:0:0,-12.6433,-132.054	0/0:32:32,0:32:1132:0:0:0,-9.63296,-101.697	0/0:31:31,0:31:1078:0:0:0,-9.33193,-97.3243	0/0:34:34,0:34:1199:0:0:0,-10.235,-108.215	0/0:27:27,0:27:951:0:0:0,-8.12781,-85.9043	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:54:34,20:34:1207:20:716:-48.4412,0,-92.6797	0/1:65:39,26:39:1389:26:910:-62.6425,0,-105.74	0/1:42:23,19:23:807:19:665:-47.5295,0,-60.3059	0/0:88:87,1:87:3065:1:36:0,-22.8924,-272.482	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	0/0:41:41,0:41:1460:0:0:0,-12.3422,-131.696	0/1:135:74,61:74:2633:61:2164:-154.384,0,-196.577	0/0:126:123,1:123:4344:1:36:0,-34.0893,-387.541	0/0:19:19,0:19:658:0:0:0,-5.71957,-59.5413	0/1:104:56,48:56:2012:48:1712:-123.057,0,-150.046	0/1:65:43,22:43:1518:22:783:-51.2168,0,-117.345	0/0:55:55,0:55:1928:0:0:0,-16.5566,-173.794	.:.:.:.:.:.:.:.	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/1:30:23,7:23:805:7:239:-12.8118,0,-63.7366	0/1:12:9,3:9:311:3:108:-6.45437,0,-24.7114	0/1:86:52,34:52:1829:34:1212:-83.4744,0,-139	0/1:96:64,32:64:2257:32:1148:-74.731,0,-174.493	0/0:22:22,0:22:767:0:0:0,-6.62266,-69.3494	.:.:.:.:.:.:.:.	0/0:63:63,0:63:2234:0:0:0,-18.9649,-201.323	0/0:15:15,0:15:524:0:0:0,-4.51545,-47.4896	0/0:175:175,0:175:6165:0:0:0,-52.6802,-554.957	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:35:21,14:21:736:14:504:-35.1593,0,-56.0263	0/1:67:29,38:29:1019:38:1360:-102.531,0,-71.8523	0/0:71:71,0:71:2496:0:0:0,-21.3731,-224.892	0/0:82:82,0:82:2885:0:0:0,-24.6845,-259.885	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/0:57:57,0:57:1992:0:0:0,-17.1587,-179.552	0/1:36:17,19:17:608:19:676:-50.3309,0,-44.2149	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:60:60,0:60:2151:0:0:0,-18.0618,-193.857	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/0:61:60,1:60:2101:1:36:0,-14.7646,-185.758	0/0:43:43,0:43:1510:0:0:0,-12.9443,-136.189	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/1:11:3,8:3:108:8:273:-21.5879,0,-6.76384	0/0:50:50,0:50:1775:0:0:0,-15.0515,-160.032	0/1:74:44,30:44:1528:30:1068:-74.1558,0,-115.533	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:57:57,0:57:2001:0:0:0,-17.1587,-180.36	0/1:84:44,40:44:1554:40:1440:-104.341,0,-114.864	0/0:43:43,0:43:1527:0:0:0,-12.9443,-137.722	0/1:29:15,14:15:531:14:500:-36.6063,0,-39.392	0/1:72:38,34:38:1345:34:1193:-85.9967,0,-99.674	0/1:89:31,58:31:1074:58:2060:-158.793,0,-70.1723	0/1:16:8,8:8:284:8:288:-21.4463,0,-21.0869	0/1:15:9,6:9:311:6:212:-14.9011,0,-23.8083	0/1:47:26,21:26:924:21:752:-53.8578,0,-69.3292	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:91:40,51:40:1419:51:1819:-136.577,0,-100.613	0/1:39:26,13:26:909:13:455:-29.5336,0,-70.3784	0/1:97:51,46:51:1787:46:1633:-118.056,0,-131.912	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:59:32,27:32:1129:27:952:-68.2344,0,-84.1556	0/1:28:15,13:15:540:13:464:-33.6381,0,-40.5077	0/0:5:5,0:5:171:0:0:0,-1.50515,-15.7255	0/0:54:53,1:53:1877:1:36:0,-12.6573,-165.609	0/0:65:65,0:65:2301:0:0:0,-19.5669,-207.35	0/0:103:103,0:103:3656:0:0:0,-31.0061,-329.247	0/0:49:49,0:49:1727:0:0:0,-14.7505,-155.714	0/0:39:39,0:39:1367:0:0:0,-11.7402,-123.328	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/0:68:68,0:68:2367:0:0:0,-20.47,-213.288	0/0:17:17,0:17:597:0:0:0,-5.11751,-54.0561	0/0:44:44,0:44:1543:0:0:0,-13.2453,-139.158	0/0:39:39,0:39:1384:0:0:0,-11.7402,-124.859	0/0:23:23,0:23:812:0:0:0,-6.92369,-73.4009	0/1:68:37,31:37:1315:31:1091:-78.0149,0,-98.181	0/1:37:9,28:9:312:28:990:-78.2712,0,-17.2772	0/0:51:51,0:51:1809:0:0:0,-15.3525,-163.09	0/0:46:46,0:46:1600:0:0:0,-13.8474,-144.286
chr12	12526356	.	C	T	97515.9	PASS	AB=0.507411;ABP=4.39432;AC=146;AF=0.784946;AN=186;AO=4602;CIGAR=1X;DP=6038;DPB=6038;DPRA=0;EPP=9996.13;EPPR=3114.73;GTI=0;LEN=1;MEANALT=1.03226;MQM=59.9959;MQMR=59.9993;NS=93;NUMALT=1;ODDS=0.375571;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=164823;QR=51207;RO=1433;RPL=0;RPP=9996.13;RPPR=3114.73;RPR=4602;RUN=1;SAF=4602;SAP=9996.13;SAR=0;SRF=1433;SRP=3114.73;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:21,16:21:747:16:576:-41.0369,0,-56.4162	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	0/1:154:63,91:63:2243:91:3229:-244.472,0,-155.775	1/1:84:1,82:1:36:82:2936:-260.876,-21.747,0	0/1:29:17,12:17:599:12:432:-30.4913,0,-45.5082	0/1:40:18,22:18:639:22:786:-59.0229,0,-45.797	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:99:55,44:55:1964:44:1580:-112.69,0,-147.233	1/1:80:0,80:0:0:80:2860:-257.636,-24.0824,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:90:0,90:0:0:90:3224:-290.382,-27.0927,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:51:0,51:0:0:51:1822:-164.261,-15.3525,0	1/1:47:0,47:0:0:47:1675:-151.036,-14.1484,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:56:21,35:21:756:35:1248:-95.7672,0,-51.5095	0/1:84:41,43:41:1459:43:1540:-113.607,0,-106.319	0/1:51:41,10:41:1472:10:356:-17.0287,0,-117.423	1/1:69:2,67:2:72:67:2407:-210.049,-13.9343,0	0/1:26:5,21:5:180:21:756:-60.5404,0,-8.72528	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:206:88,117:88:3144:117:4189:-315.119,0,-221.115	1/1:129:1,128:1:36:128:4588:-409.486,-35.2346,0	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:127:72,55:72:2559:55:1972:-139.524,0,-192.33	0/1:127:50,77:50:1784:77:2764:-210.77,0,-122.612	1/1:80:0,80:0:0:80:2864:-257.997,-24.0824,0	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	.:.:.:.:.:.:.:.	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:20:5,15:5:176:15:536:-42.5542,0,-10.1644	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:144:74,70:74:2644:70:2497:-181.634,0,-194.859	0/1:111:57,54:57:2052:54:1944:-141.822,0,-151.537	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:73:0,73:0:0:73:2599:-234.159,-21.9752,0	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:73:0,73:0:0:73:2615:-235.597,-21.9752,0	1/1:34:0,34:0:0:34:1211:-109.295,-10.235,0	0/1:47:19,28:19:684:28:1004:-76.5275,0,-47.7419	0/1:99:58,41:58:2088:41:1468:-102.614,0,-158.388	1/1:102:0,102:0:0:102:3652:-328.884,-30.7051,0	1/1:122:0,121:0:0:121:4332:-389.795,-36.4246,0	1/1:78:0,78:0:0:78:2795:-251.789,-23.4803,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:78:33,45:33:1175:45:1616:-122.25,0,-82.5766	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:110:0,110:0:0:110:3948:-355.511,-33.1133,0	1/1:42:0,42:0:0:42:1497:-135.023,-12.6433,0	0/1:8:7,1:7:248:1:36:-1.19004,0,-20.256	1/1:85:0,85:0:0:85:3019:-271.938,-25.5876,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:15:2,13:2:72:13:468:-37.9442,0,-2.32127	0/1:11:7,4:7:243:4:144:-10.0023,0,-18.8962	1/1:65:0,65:0:0:65:2313:-208.429,-19.567,0	0/1:107:55,52:55:1968:52:1868:-136.189,0,-145.185	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:124:0,124:0:0:124:4460:-401.568,-37.3277,0	0/1:148:64,84:64:2288:84:3016:-227.118,0,-161.629	1/1:46:1,45:1:36:45:1598:-140.511,-10.2491,0	0/1:54:25,29:25:900:29:1040:-77.6587,0,-65.0654	0/1:105:43,62:43:1540:62:2221:-168.546,0,-107.285	0/1:99:71,28:71:2526:28:987:-59.3411,0,-197.789	0/1:42:22,20:22:784:20:720:-52.4855,0,-58.2407	0/1:41:21,20:21:756:20:712:-52.0644,0,-56.025	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:140:71,69:71:2544:69:2467:-180.139,0,-187.067	0/1:82:39,43:39:1392:43:1529:-113.217,0,-100.895	0/1:176:65,111:65:2328:111:3973:-304.778,0,-156.799	1/1:100:0,100:0:0:100:3592:-323.486,-30.103,0	0/1:74:34,40:34:1220:40:1420:-105.82,0,-87.8306	0/1:38:24,14:24:860:14:496:-33.5351,0,-66.2827	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	1/1:62:0,62:0:0:62:2219:-199.974,-18.6639,0	1/1:184:0,184:0:0:184:6590:-593.18,-55.3895,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:78:0,78:0:0:78:2783:-250.71,-23.4803,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:41:0,41:0:0:41:1467:-132.325,-12.3422,0	1/1:54:0,54:0:0:54:1944:-175.236,-16.2556,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	0/1:120:73,47:73:2602:47:1688:-116.083,0,-198.304	0/1:59:42,17:42:1491:17:599:-36.4773,0,-116.723	1/1:83:0,83:0:0:83:2972:-267.713,-24.9855,0	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0
chr12	12526368	.	A	T	23951.4	PASS	AB=0.492276;ABP=4.51982;AC=40;AF=0.215054;AN=186;AO=1439;CIGAR=1X;DP=6070;DPB=6070;DPRA=1.27667;EPP=3110.41;EPPR=9952.97;GTI=0;LEN=1;MEANALT=1;MQM=59.9979;MQMR=59.9866;NS=93;NUMALT=1;ODDS=0.419855;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51390;QR=165625;RO=4630;RPL=2;RPP=3110.41;RPPR=9952.97;RPR=1437;RUN=1;SAF=1439;SAP=3127.76;SAR=0;SRF=4630;SRP=10056.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:16,23:16:576:23:820:-62.3823,0,-40.4348	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/1:152:91,61:91:3268:61:2181:-150.798,0,-248.583	0/0:82:81,1:81:2897:1:36:0,-21.0862,-257.366	0/1:30:12,18:12:432:18:648:-49.621,0,-30.1903	0/1:40:22,18:22:788:18:648:-46.6107,0,-59.2036	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:102:47,55:47:1684:55:1972:-147.05,0,-121.142	0/0:80:80,0:80:2857:0:0:0,-24.0824,-257.366	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:92:92,0:92:3312:0:0:0,-27.6948,-298.297	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:55:35,20:35:1260:20:720:-48.5721,0,-97.1488	0/1:83:43,40:43:1533:40:1428:-103.831,0,-113.276	0/1:51:9,42:9:320:42:1468:-117.058,0,-13.7898	0/0:69:67,2:67:2393:2:72:0,-13.9343,-208.789	0/1:27:22,5:22:792:5:180:-8.42425,0,-63.4779	0/0:68:68,0:68:2433:0:0:0,-20.47,-219.224	0/1:208:117,91:117:4162:91:3257:-230.735,0,-312.147	0/0:133:132,1:132:4725:1:36:0,-36.4387,-421.492	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:128:56,72:56:2008:72:2523:-188.786,0,-142.461	0/1:127:78,49:78:2808:49:1760:-120.453,0,-214.728	0/0:81:81,0:81:2889:0:0:0,-24.3834,-260.245	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	.:.:.:.:.:.:.:.	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:146:72,74:72:2588:74:2664:-196.055,0,-189.173	0/1:108:53,55:53:1885:55:1923:-140.83,0,-137.415	0/0:39:39,0:39:1381:0:0:0,-11.7402,-124.587	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:46:29,17:29:1040:17:608:-41.2046,0,-80.067	0/1:98:40,58:40:1436:58:2056:-155.808,0,-100.037	0/0:101:101,0:101:3590:0:0:0,-30.404,-323.305	0/0:123:123,0:123:4366:0:0:0,-37.0267,-393.007	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/1:83:48,35:48:1720:35:1248:-87.6394,0,-130.1	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:111:111,0:111:3977:0:0:0,-33.4143,-358.118	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:15:13,2:13:453:2:72:-2.32127,0,-36.5842	0/1:11:4,7:4:144:7:237:-18.3477,0,-10.0023	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/1:108:54,54:54:1929:54:1931:-141.555,0,-141.373	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:125:125,0:125:4428:0:0:0,-37.6287,-398.689	0/1:147:84,63:84:3009:63:2236:-157.25,0,-226.788	0/0:45:44,1:44:1576:1:36:0,-9.94807,-138.533	0/1:55:29,26:29:1036:26:936:-68.0028,0,-76.9973	0/1:103:59,44:59:2124:44:1569:-110.493,0,-160.422	0/1:100:28,72:28:1008:72:2588:-203.065,0,-60.9334	0/1:43:20,23:20:712:23:824:-61.539,0,-51.4624	0/1:42:21,21:21:752:21:756:-55.724,0,-55.363	0/1:32:11,21:11:396:21:756:-58.7343,0,-26.3498	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:141:69,72:69:2476:72:2588:-190.723,0,-180.648	0/1:80:42,38:42:1508:38:1364:-98.9783,0,-111.932	0/1:177:110,67:110:3941:67:2408:-163.694,0,-301.597	0/0:99:99,0:99:3556:0:0:0,-29.802,-320.247	0/1:74:41,33:41:1438:33:1161:-82.5185,0,-107.436	0/1:38:14,24:14:474:24:864:-66.6434,0,-31.5406	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:45:45,0:45:1605:0:0:0,-13.5463,-144.738	0/0:63:63,0:63:2200:0:0:0,-18.9649,-198.259	0/0:189:189,0:189:6709:0:0:0,-56.8947,-603.884	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.197	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:120:47,73:47:1692:73:2624:-200.283,0,-116.443	0/1:60:17,43:17:604:43:1544:-121.191,0,-36.6288	0/0:84:84,0:84:3001:0:0:0,-25.2865,-270.32	0/0:64:63,0:63:2264:0:0:0,-18.9649,-203.662
chr12	12526443	.	A	G	29391.4	PASS	AB=0.525083;ABP=21.202;AC=37;AF=0.198925;AN=186;AO=1766;CIGAR=1X;DP=7165;DPB=7165;DPRA=1.48109;EPP=3837.83;EPPR=11724.6;GTI=4;LEN=1;MEANALT=1.02174;MQM=59.8817;MQMR=59.9165;NS=93;NUMALT=1;ODDS=0.000504748;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62720;QR=192712;RO=5398;RPL=0;RPP=3837.83;RPPR=11724.6;RPR=1766;RUN=1;SAF=0;SAP=3837.83;SAR=1766;SRF=0;SRP=11724.6;SRR=5398;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:6,10:6:216:10:351:-27.1102,0,-14.974	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:98:44,54:44:1584:54:1904:-142.134,0,-113.123	0/0:172:172,0:172:6136:0:0:0,-51.7772,-551.378	0/1:50:18,32:18:648:32:1148:-88.5783,0,-43.6004	0/1:61:38,23:38:1356:23:819:-55.6687,0,-103.978	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:113:58,55:58:2076:55:1964:-143.014,0,-153.094	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.133	0/0:95:95,0:95:3398:0:0:0,-28.5978,-305.806	0/0:25:25,0:25:891:0:0:0,-7.52575,-80.5088	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:65:65,0:65:2300:0:0:0,-19.5669,-207.259	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.549	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:149:67,82:67:2408:82:2907:-217.006,0,-172.123	0/1:153:55,98:55:1972:98:3481:-267.444,0,-131.697	0/1:118:24,94:24:849:94:3349:-266.105,0,-41.2063	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:62:59,3:59:2112:3:108:0,-8.58869,-180.144	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:376:222,154:222:7941:154:5475:-379.689,0,-600.947	0/0:111:111,0:111:3946:0:0:0,-33.4143,-355.33	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:272:111,160:111:3983:160:5684:-429.034,0,-276.868	0/1:91:77,14:77:2743:14:504:-18.3044,0,-219.719	0/0:88:88,0:88:3147:0:0:0,-26.4906,-283.455	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:11:2,9:2:68:9:320:-25.831,0,-3.14638	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:159:75,84:75:2671:84:3012:-223.447,0,-192.772	0/1:213:102,111:102:3651:111:3965:-292.92,0,-264.674	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8591	.:.:.:.:.:.:.:.	0/0:182:182,0:182:6462:0:0:0,-54.7875,-580.514	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:145:145,0:145:5180:0:0:0,-43.6493,-466.339	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:37:11,26:11:396:26:891:-69.3611,0,-24.8446	0/1:72:33,39:33:1173:39:1400:-104.625,0,-84.2014	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:169:168,1:168:5956:1:36:0,-47.2758,-532.549	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/0:138:137,1:137:4915:1:36:0,-37.9439,-438.901	0/1:101:47,54:47:1665:54:1893:-139.383,0,-119.731	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:141:140,1:140:5011:1:36:0,-38.847,-447.538	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/0:118:118,0:118:4202:0:0:0,-35.5215,-378.362	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/1:77:41,36:41:1458:36:1275:-91.3147,0,-108.335	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:118:118,0:118:4190:0:0:0,-35.5215,-377.281	0/1:200:124,76:124:4420:76:2672:-180.517,0,-337.576	0/0:79:73,6:73:2602:6:216:0,-3.99086,-214.507	0/1:71:46,25:46:1639:25:896:-59.5872,0,-126.425	0/1:132:41,91:41:1459:91:3233:-249.897,0,-91.8693	0/1:85:24,61:24:860:61:2169:-169.887,0,-52.0772	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/1:52:28,24:28:1004:24:855:-61.6166,0,-75.0223	0/1:63:34,29:34:1215:29:1006:-71.8817,0,-90.6909	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/1:82:36,46:36:1296:46:1624:-121.762,0,-92.2595	0/1:60:25,35:25:896:35:1256:-95.2835,0,-62.8986	0/1:104:55,49:55:1967:49:1738:-125.396,0,-145.997	0/0:161:161,0:161:5747:0:0:0,-48.4658,-517.345	0/1:87:46,41:46:1648:41:1468:-106.226,0,-122.419	0/1:70:33,37:33:1180:37:1310:-97.128,0,-85.2083	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/0:131:130,1:130:4623:1:36:0,-35.8367,-412.635	0/0:95:95,0:95:3403:0:0:0,-28.5978,-306.354	0/0:153:153,0:153:5490:0:0:0,-46.0576,-493.77	0/0:86:83,3:83:2952:3:108:0,-15.8134,-255.837	0/0:58:58,0:58:2075:0:0:0,-17.4597,-187.02	0/0:61:61,0:61:2161:0:0:0,-18.3628,-194.756	0/0:93:92,1:92:3267:1:36:0,-24.3975,-290.651	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.5	0/0:64:64,0:64:2275:0:0:0,-19.2659,-205.012	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:33:11,22:11:392:22:765:-59.2337,0,-25.6861	0/1:67:15,52:15:531:52:1842:-145.033,0,-27.9529	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:77:77,0:77:2743:0:0:0,-23.1793,-246.885
chr12	12577806	.	TTCT	TACT,CACT	79899.7	PASS	AB=0.492647,0.505656;ABP=3.84057,3.50158;AC=144,42;AF=0.774194,0.225806;AN=186;AO=2831,904;CIGAR=1M1X2M,2X2M;DP=3746;DPB=3746.25;DPRA=13.6996,1.27564;EPP=6150.45,1966.02;EPPR=9.52472;GTI=0;LEN=1,2;MEANALT=1.52747,2;MQM=59.9601,59.7157;MQMR=60;NS=93;NUMALT=2;ODDS=0.0919455;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,0;PQR=0;PRO=0;QA=100962,31924;QR=102;RO=3;RPL=2831,904;RPP=6150.45,1966.02;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=6150.45,1966.02;SAR=2831,904;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:29:0,12,17:0:0:12,17:432,599:-84.3719,-49.1198,-45.5074,-35.6088,0,-30.4913	1/1:33:0,33,0:0:0:33,0:1176,0:-106.142,-9.93399,0,-106.142,-9.93399,-106.142	1/2:73:0,41,32:0:0:41,32:1453,1123:-210.108,-91.7381,-79.3959,-118.722,0,-109.089	1/1:57:0,56,0:0:0:56,0:2012,0:-181.1,-16.8577,0,-181.1,-16.8577,-181.1	1/2:33:0,20,13:0:0:20,13:716,455:-95.761,-37.3668,-31.3462,-58.7471,0,-54.8337	1/2:23:0,14,9:0:0:14,9:500,322:-67.3793,-26.6149,-22.4005,-41.1218,0,-38.4125	1/1:40:0,40,0:0:0:40,0:1424,0:-128.457,-12.0412,0,-128.457,-12.0412,-128.457	1/2:45:0,25,20:0:0:25,20:869,703:-127.95,-57.3005,-49.7748,-70.9981,0,-64.9775	1/1:25:0,24,1:0:0:24,1:856,34:-77.0206,-7.22472,0,-74.2632,-4.12684,-73.9622	1/1:29:0,29,0:0:0:29,0:1016,0:-91.7504,-8.72987,0,-91.7504,-8.72987,-91.7504	1/1:46:0,43,0:0:0:43,0:1540,0:-138.558,-12.9443,0,-138.558,-12.9443,-138.558	1/1:44:0,44,0:0:0:44,0:1553,0:-140.06,-13.2453,0,-140.06,-13.2453,-140.06	1/1:53:0,53,0:0:0:53,0:1885,0:-169.926,-15.9546,0,-169.926,-15.9546,-169.926	1/1:46:1,45,0:1:30:45,0:1608,0:-142.006,-10.8478,0,-142.307,-13.5464,-144.704	1/1:51:0,51,0:0:0:51,0:1828,0:-164.801,-15.3525,0,-164.801,-15.3525,-164.801	1/1:44:0,44,0:0:0:44,0:1580,0:-142.49,-13.2453,0,-142.49,-13.2453,-142.49	1/1:32:0,32,0:0:0:32,0:1152,0:-103.99,-9.63296,0,-103.99,-9.63296,-103.99	1/1:20:0,19,0:0:0:19,0:669,0:-60.1745,-5.71957,0,-60.1745,-5.71957,-60.1745	1/1:19:0,19,0:0:0:19,0:669,0:-60.5339,-5.71957,0,-60.5339,-5.71957,-60.5339	1/2:62:0,32,30:0:0:32,30:1151,1078:-182.21,-88.3023,-78.6693,-94.2672,0,-85.2363	1/2:51:0,22,29:0:0:22,29:769,1027:-146.567,-84.012,-77.3894,-62.9059,0,-54.1761	1/2:41:0,9,32:0:0:9,32:320,1128:-118.261,-92.1825,-89.4732,-26.4331,0,-16.8001	1/1:51:0,51,0:0:0:51,0:1820,0:-164.08,-15.3525,0,-164.08,-15.3525,-164.08	1/1:32:0,32,0:0:0:32,0:1129,0:-101.916,-9.63296,0,-101.916,-9.63296,-101.916	1/1:71:1,70,0:1:36:70,0:2504,0:-222.014,-17.7749,0,-222.315,-21.0721,-225.252	1/2:56:0,34,21:0:0:34,21:1216,748:-160.119,-60.964,-50.7289,-99.1518,0,-92.8302	1/1:50:0,50,0:0:0:50,0:1772,0:-159.762,-15.0515,0,-159.762,-15.0515,-159.762	1/1:15:0,15,0:0:0:15,0:540,0:-48.9365,-4.51545,0,-48.9365,-4.51545,-48.9365	1/2:98:0,51,46:0:0:51,46:1817,1641:-281.815,-133.714,-118.362,-148.097,0,-134.25	1/2:37:0,23,14:0:0:23,14:809,498:-106.791,-40.9409,-34.0172,-66.204,0,-61.9896	1/1:48:0,47,1:0:0:47,1:1669,34:-150.155,-14.1484,0,-147.397,-11.0505,-147.096	.:.:.:.:.:.:.:.	1/2:11:0,2,9:0:0:2,9:72,324:-32.6607,-26.7858,-26.1838,-6.23466,0,-3.52539	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:8:0,2,6:0:0:2,6:72,203:-22.6701,-16.7899,-16.1878,-6.23466,0,-4.42848	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/2:113:0,50,63:0:0:50,63:1796,2233:-328.428,-181.914,-166.862,-146.871,0,-127.906	1/2:59:0,30,29:0:0:30,29:1072,1029:-171.598,-84.1923,-75.1614,-87.7616,0,-79.0317	1/1:31:0,31,0:0:0:31,0:1112,0:-100.391,-9.33193,0,-100.391,-9.33193,-100.391	2/2:2:0,0,2:0:0:0,2:0,70:-6.64733,-6.64733,-6.64733,-0.60206,-0.60206,0	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:77:0,77,0:0:0:77,0:2741,0:-246.931,-23.1793,0,-246.931,-23.1793,-246.931	1/1:25:0,25,0:0:0:25,0:896,0:-80.9588,-7.52575,0,-80.9588,-7.52575,-80.9588	1/2:33:0,21,12:0:0:21,12:752,412:-95.1314,-33.7953,-27.4737,-61.6846,0,-58.0723	1/2:41:0,14,27:0:0:14,27:504,955:-119.261,-78.1349,-73.9205,-41.4837,0,-33.3559	1/1:32:0,32,0:0:0:32,0:1138,0:-102.721,-9.63296,0,-102.721,-9.63296,-102.721	1/1:53:0,53,0:0:0:53,0:1881,0:-169.567,-15.9546,0,-169.567,-15.9546,-169.567	1/1:35:0,35,0:0:0:35,0:1256,0:-113.345,-10.5361,0,-113.345,-10.5361,-113.345	1/1:43:0,43,0:0:0:43,0:1548,0:-139.613,-12.9443,0,-139.613,-12.9443,-139.613	1/2:27:0,20,7:0:0:20,7:712,252:-78.949,-20.9217,-14.9011,-58.3861,0,-56.2788	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:90:0,89,1:0:0:89,1:3161,25:-284.464,-26.7917,0,-282.516,-24.5928,-282.215	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	1/2:9:0,6,3:0:0:6,3:216,97:-25.7958,-8.1469,-6.34072,-17.9843,0,-17.0812	1/1:53:0,53,0:0:0:53,0:1888,0:-170.198,-15.9546,0,-170.198,-15.9546,-170.198	1/1:8:0,8,0:0:0:8,0:288,0:-26.2535,-2.40824,0,-26.2535,-2.40824,-26.2535	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/2:11:0,9,2:0:0:9,2:324,72:-32.6714,-6.23466,-3.52539,-26.7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chr12	13193857	.	T	C	37169.6	PASS	AB=0.589286;ABP=99.951;AC=49;AF=0.266304;AN=184;AO=1868;CIGAR=1X;DP=4626;DPB=4626;DPRA=1.51441;EPP=4059.32;EPPR=5937.64;GTI=9;LEN=1;MEANALT=1.19048;MQM=59.9973;MQMR=60;NS=92;NUMALT=1;ODDS=0.490076;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=66512;QR=97758;RO=2733;RPL=1868;RPP=4059.32;RPPR=5920.29;RPR=0;RUN=1;SAF=0;SAP=4059.32;SAR=1868;SRF=2;SRP=5920.29;SRR=2731;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/0:48:48,0:48:1686:0:0:0,-14.4494,-152.022	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:60:26,34:26:936:34:1194:-89.6994,0,-66.4977	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:88:88,0:88:3133:0:0:0,-26.4906,-282.195	0/0:61:60,0:60:2148:0:0:0,-18.0618,-193.228	0/0:59:59,0:59:2109:0:0:0,-17.7608,-190.077	0/0:84:82,0:82:2936:0:0:0,-24.6845,-264.115	0/0:62:61,0:61:2196:0:0:0,-18.3628,-197.545	0/0:54:53,0:53:1870:0:0:0,-15.9546,-168.216	0/0:83:82,0:82:2933:0:0:0,-24.6845,-263.843	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:34:24,10:24:864:10:360:-22.5093,0,-67.8475	0/1:25:14,11:14:496:11:396:-28.457,0,-37.4485	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:32:30,2:30:1076:2:72:0,-2.79624,-90.3161	0/0:21:21,0:21:737:0:0:0,-6.32163,-66.6506	0/1:78:39,39:39:1400:39:1381:-101.106,0,-102.819	0/0:43:43,0:43:1533:0:0:0,-12.9443,-138.261	0/0:38:38,0:38:1349:0:0:0,-11.4391,-121.708	0/1:38:16,22:16:576:22:792:-60.1665,0,-40.7358	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/0:12:11,0:11:396:0:0:0,-3.31133,-35.6229	1/1:133:3,130:3:108:130:4599:-404,-29.9618,0	1/1:71:1,70:1:36:70:2512:-222.734,-17.7749,0	.:.:.:.:.:.:.:.	1/1:255:3,251:3:89:251:8870:-789.98,-68.4714,0	1/1:84:2,82:2:72:82:2936:-257.638,-18.4498,0	0/1:99:62,35:62:2232:35:1256:-83.7856,0,-171.584	0/1:12:6,6:6:197:6:216:-16.1782,0,-14.439	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	1/1:47:1,46:1:36:46:1622:-142.665,-10.5501,0	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:42:41,0:41:1472:0:0:0,-12.3422,-132.416	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:53:31,21:31:1116:21:729:-49.9159,0,-84.7383	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:38:18,20:18:648:20:720:-53.6896,0,-47.2127	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	1/1:66:2,63:2:72:63:2241:-195.117,-13.0901,0	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:123:0,123:0:0:123:4372:-393.653,-37.0267,0	1/1:176:1,174:1:36:174:6165:-551.349,-49.4418,0	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:71:50,20:50:1796:20:701:-41.9803,0,-140.49	.:.:.:.:.:.:.:.	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:51:18,33:18:644:33:1188:-91.8761,0,-42.9381	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/1:34:13,21:13:464:21:756:-58.1322,0,-31.8625	0/1:38:11,27:11:396:27:968:-75.9982,0,-24.5436	0/1:146:22,123:22:792:123:4408:-352.883,0,-27.5965	0/1:15:2,13:2:72:13:464:-37.5821,0,-2.32127	0/1:57:38,19:38:1356:19:684:-44.7316,0,-105.182	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:16:13,3:13:460:3:108:-5.25869,0,-36.9189	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.8145	0/1:45:24,21:24:845:21:737:-53.1043,0,-62.8207	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:23:15,8:15:525:8:288:-19.3437,0,-40.6544	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	1/1:103:2,101:2:72:101:3628:-319.887,-24.1694,0	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:16:16,0:16:542:0:0:0,-4.81648,-49.0977	0/0:54:54,0:54:1924:0:0:0,-16.2556,-173.437	0/0:102:99,0:99:3556:0:0:0,-29.802,-319.887	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/0:69:68,0:68:2433:0:0:0,-20.47,-218.864	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.172	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:67:66,0:66:2372:0:0:0,-19.868,-213.378	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.194	0/0:71:70,0:70:2497:0:0:0,-21.0721,-224.621	0/1:250:38,212:38:1368:212:7562:-605.363,0,-48.1633	0/1:47:16,31:16:572:31:1103:-85.432,0,-37.665	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:100:96,1:96:3441:1:36:0,-25.9615,-306.302
chr12	13491310	.	A	T	50349	PASS	AB=0.513151;ABP=11.6345;AC=42;AF=0.223404;AN=188;AO=2959;CIGAR=1X;DP=11895;DPB=11895;DPRA=1.30975;EPP=6428.4;EPPR=19389.9;GTI=1;LEN=1;MEANALT=1.04167;MQM=59.977;MQMR=59.9862;NS=94;NUMALT=1;ODDS=0.195823;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105897;QR=319028;RO=8932;RPL=0;RPP=6428.4;RPPR=19398.6;RPR=2959;RUN=1;SAF=2959;SAP=6428.4;SAR=0;SRF=8931;SRP=19389.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:12,17:12:428:17:612:-46.6836,0,-30.1289	0/0:183:183,0:183:6478:0:0:0,-55.0885,-583.103	0/1:105:59,46:59:2082:46:1648:-117,0,-156.039	0/0:268:266,2:266:9511:2:72:0,-73.8393,-849.107	0/1:103:54,49:54:1944:49:1756:-127.318,0,-144.23	0/1:111:46,64:46:1652:64:2300:-173.788,0,-115.495	0/0:146:146,0:146:5218:0:0:0,-43.9504,-469.755	0/1:253:123,130:123:4371:130:4646:-342.115,0,-317.401	0/0:134:134,0:134:4790:0:0:0,-40.338,-431.253	0/0:151:151,0:151:5387:0:0:0,-45.4555,-484.958	0/0:57:57,0:57:2033:0:0:0,-17.1587,-183.24	0/0:90:89,0:89:3192:0:0:0,-26.7917,-287.143	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:66:66,0:66:2357:0:0:0,-19.868,-212.387	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:77:76,1:76:2719:1:36:0,-19.581,-241.355	0/0:60:60,0:60:2152:0:0:0,-18.0618,-193.947	0/0:38:38,0:38:1353:0:0:0,-11.4391,-122.068	0/1:305:152,153:152:5460:153:5473:-400.882,0,-399.712	0/1:206:110,96:110:3945:96:3405:-244.646,0,-293.227	0/1:140:49,91:49:1760:91:3272:-252.555,0,-116.54	0/0:92:92,0:92:3289:0:0:0,-27.6948,-296.228	0/0:87:83,4:83:2980:4:144:0,-12.876,-255.118	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/1:605:303,302:303:10775:302:10805:-790.226,0,-787.526	0/0:242:242,0:242:8650:0:0:0,-72.8493,-778.492	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:389:212,177:212:7579:177:6352:-454.668,0,-565.044	0/1:143:73,70:73:2609:70:2516:-183.638,0,-191.973	0/0:234:233,1:233:8308:1:36:0,-66.8427,-744.109	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:12:9,3:9:320:3:108:-6.46281,0,-25.53	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:17:7,10:7:252:10:345:-26.2633,0,-17.9114	0/1:13:2,11:2:72:11:396:-32.0694,0,-2.92333	0/1:225:102,123:102:3649:123:4375:-326.188,0,-260.881	0/1:285:153,132:153:5500:132:4738:-340.783,0,-409.33	0/0:57:57,0:57:2025:0:0:0,-17.1587,-182.521	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:169:169,0:169:6049:0:0:0,-50.8741,-544.51	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:88:88,0:88:3149:0:0:0,-26.4906,-283.633	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.772	0/1:67:40,27:40:1436:27:972:-67.6289,0,-109.369	0/1:136:67,69:67:2378:69:2472:-181.793,0,-172.612	0/0:185:185,0:185:6560:0:0:0,-55.6905,-590.483	0/0:134:134,0:134:4790:0:0:0,-40.338,-431.253	0/0:114:114,0:114:4062:0:0:0,-34.3174,-365.765	0/0:238:238,0:238:8446:0:0:0,-71.6451,-760.136	0/1:61:38,23:38:1368:23:824:-56.1205,0,-105.058	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:204:204,0:204:7324:0:0:0,-61.4101,-659.207	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.127	0/1:16:6,10:6:201:10:360:-27.9278,0,-13.6006	0/0:227:225,2:225:8050:2:72:0,-61.4971,-717.679	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/1:15:9,6:9:316:6:197:-13.5359,0,-24.2634	0/1:52:9,43:9:324:43:1544:-123.6,0,-13.8523	0/0:107:107,0:107:3825:0:0:0,-32.2102,-344.445	0/1:138:67,71:67:2404:71:2552:-188.388,0,-175.074	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:195:195,0:195:6977:0:0:0,-58.7008,-627.993	0/1:343:135,208:135:4836:208:7437:-566.071,0,-332.141	0/0:70:69,1:69:2465:1:36:0,-17.4738,-218.504	0/1:104:51,53:51:1836:53:1904:-140.331,0,-134.214	0/1:283:141,142:141:4978:142:5082:-372.332,0,-362.964	0/1:107:33,74:33:1158:74:2652:-206.716,0,-72.3123	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/1:59:29,30:29:1029:30:1076:-79.3921,0,-75.1604	0/1:115:58,57:58:2080:57:2048:-149.973,0,-152.852	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:194:100,94:100:3562:94:3372:-245.296,0,-262.386	0/1:82:41,41:41:1457:41:1472:-108.092,0,-106.74	0/1:411:235,176:235:8395:176:6302:-443.545,0,-631.828	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/1:216:105,111:105:3776:111:3920:-287.968,0,-275.015	0/1:171:60,111:60:2160:111:3968:-305.832,0,-143.191	0/1:19:7,12:7:252:12:428:-33.1392,0,-17.3094	0/0:177:177,0:177:6330:0:0:0,-53.2823,-569.786	0/0:151:151,0:151:5394:0:0:0,-45.4555,-485.588	0/0:523:523,0:523:18631:0:0:0,-157.439,-1676.37	0/0:98:98,0:98:3489:0:0:0,-29.5009,-314.221	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/0:93:93,0:93:3317:0:0:0,-27.9958,-298.747	0/0:164:161,1:161:5750:1:36:0,-45.5284,-513.998	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:60:60,0:60:2126:0:0:0,-18.0618,-191.605	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:101:45,56:45:1597:56:2016:-151.309,0,-113.614	0/1:74:36,38:36:1296:38:1364:-100.784,0,-94.6677	0/0:151:151,0:151:5368:0:0:0,-45.4555,-483.249	0/0:108:108,0:108:3865:0:0:0,-32.5112,-348.043
chr12	13707380	.	A	G	105967	PASS	AB=0.4514;ABP=68.2303;AC=146;AF=0.784946;AN=186;AO=5155;CIGAR=1X;DP=6921;DPB=6921;DPRA=18.7962;EPP=11197;EPPR=3835.66;GTI=4;LEN=1;MEANALT=1.01087;MQM=45.8037;MQMR=33.6782;NS=93;NUMALT=1;ODDS=2.17751;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=183916;QR=62895;RO=1765;RPL=0;RPP=11197;RPPR=3835.66;RPR=5155;RUN=1;SAF=5155;SAP=11197;SAR=0;SRF=1765;SRP=3835.66;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:33:13,20:13:460:20:716:-53.3737,0,-25.7585	1/1:115:0,115:0:0:115:4109:-362.591,-34.6185,0	0/1:111:64,47:64:2280:47:1684:-115.777,0,-144.244	1/1:90:0,90:0:0:90:3224:-285.065,-27.0927,0	0/1:28:15,13:15:540:13:468:-33.6595,0,-33.8915	0/1:23:17,6:17:612:6:216:-12.5931,0,-38.2712	1/1:86:0,86:0:0:86:3047:-270.228,-25.8886,0	0/1:124:73,51:73:2589:51:1809:-121.177,0,-164.313	1/1:58:0,58:0:0:58:2069:-183.02,-17.4597,0	1/1:98:0,98:0:0:98:3494:-310.041,-29.5009,0	1/1:19:0,19:0:0:19:680:-60.3524,-5.71957,0	1/1:44:1,43:1:36:43:1548:-132.898,-10.1217,0	1/1:40:0,40:0:0:40:1421:-125.154,-12.0412,0	1/1:32:0,32:0:0:32:1133:-100.48,-9.63296,0	1/1:37:0,37:0:0:37:1313:-116.237,-11.1381,0	1/1:38:0,38:0:0:38:1353:-120.556,-11.4391,0	1/1:35:0,35:0:0:35:1237:-108.71,-10.5361,0	1/1:41:0,41:0:0:41:1476:-129.573,-12.3422,0	1/1:6:0,6:0:0:6:216:-18.7722,-1.80618,0	0/1:160:89,71:89:3192:71:2529:-175.768,0,-203.706	0/1:131:76,55:76:2724:55:1945:-132.763,0,-177.183	0/1:81:52,29:52:1856:29:1043:-67.8821,0,-124.45	1/1:55:0,55:0:0:55:1976:-175.837,-16.5567,0	1/1:129:6,123:6:212:123:4318:-366.723,-21.4842,0	1/1:64:1,63:1:36:63:2253:-196.63,-16.0783,0	0/1:203:95,108:95:3400:108:3872:-283.21,0,-209.969	1/1:147:0,147:0:0:147:5237:-466.863,-44.2514,0	1/1:18:0,18:0:0:18:644:-57.0913,-5.41854,0	0/1:236:123,113:123:4372:113:4022:-284.581,0,-278.138	0/1:124:71,53:71:2529:53:1892:-130.353,0,-164.057	1/1:95:1,94:1:36:94:3369:-296.091,-25.4102,0	0/1:5:4,1:4:144:1:36:-2.06166,0,-10.2891	0/1:7:3,4:3:108:4:144:-10.5568,0,-6.81814	1/1:1:0,1:0:0:1:36:-3.54852,-0.30103,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.5575	0/1:3:2,1:2:72:1:36:-2.64543,0,-5.03182	0/1:184:103,81:103:3696:81:2908:-203.018,0,-236.463	0/1:179:77,102:77:2752:102:3613:-266.233,0,-163.978	1/1:24:0,24:0:0:24:849:-75.5415,-7.22472,0	.:.:.:.:.:.:.:.	1/1:93:0,93:0:0:93:3302:-292.257,-27.9958,0	1/1:15:0,15:0:0:15:540:-48.1649,-4.51545,0	1/1:117:0,117:0:0:117:4184:-372.692,-35.2205,0	1/1:39:0,39:0:0:39:1400:-124.524,-11.7402,0	0/1:59:36,23:36:1284:23:828:-56.086,0,-83.4096	0/1:55:32,23:32:1136:23:828:-56.354,0,-72.7717	1/1:110:2,108:2:72:108:3801:-330.949,-28.0719,0	1/1:214:0,214:0:0:214:7636:-678.984,-64.4204,0	1/1:136:2,134:2:72:134:4785:-418.151,-34.1034,0	1/1:98:0,98:0:0:98:3516:-311.018,-29.5009,0	0/1:149:90,59:90:3200:59:2112:-142.447,0,-210.365	1/1:3:0,3:0:0:3:108:-9.98707,-0.90309,0	1/1:124:0,124:0:0:124:4448:-393.097,-37.3277,0	1/1:25:0,25:0:0:25:885:-78.9402,-7.52575,0	0/1:16:10,6:10:360:6:216:-14.7004,0,-22.8073	1/1:121:0,121:0:0:121:4306:-381.113,-36.4246,0	1/1:21:0,21:0:0:21:756:-67.762,-6.32163,0	0/1:12:10,2:10:360:2:68:-2.44305,0,-25.2739	0/1:17:7,10:7:252:10:360:-26.9954,0,-15.2833	1/1:58:0,58:0:0:58:2080:-184.373,-17.4597,0	0/1:78:45,33:45:1612:33:1188:-82.1822,0,-104.199	1/1:5:0,4:0:0:4:144:-12.958,-1.20412,0	1/1:149:0,149:0:0:149:5310:-472.192,-44.8535,0	0/1:185:108,77:108:3830:77:2746:-189.051,0,-247.936	1/1:58:3,55:3:108:55:1974:-167.433,-8.59411,0	0/1:76:37,39:37:1309:39:1385:-101.005,0,-79.8453	0/1:110:48,62:48:1697:62:2219:-165.08,0,-99.25	0/1:49:26,23:26:924:23:828:-59.1492,0,-58.6508	0/1:9:5,4:5:180:4:144:-10.4879,0,-11.9538	0/1:90:45,45:45:1600:45:1563:-112.04,0,-98.9266	0/1:64:34,30:34:1209:30:1080:-76.8103,0,-78.3074	1/1:8:0,8:0:0:8:288:-26.0377,-2.40824,0	0/1:94:55,39:55:1968:39:1400:-95.8532,0,-123.183	0/1:70:42,28:42:1481:28:993:-65.6832,0,-95.5913	0/1:131:73,58:73:2566:58:2073:-145.075,0,-165.52	1/1:148:0,148:0:0:148:5271:-469.753,-44.5524,0	0/1:59:24,35:24:852:35:1260:-93.9887,0,-49.3486	0/1:117:68,49:68:2436:49:1764:-120.952,0,-152.537	0/1:15:4,11:4:144:11:396:-30.9697,0,-7.04201	1/1:113:0,113:0:0:113:4041:-357.269,-34.0164,0	1/1:74:0,74:0:0:74:2622:-232.007,-22.2762,0	1/1:159:0,159:0:0:159:5633:-501.347,-47.8638,0	1/1:77:0,77:0:0:77:2768:-245.862,-23.1793,0	1/1:30:0,30:0:0:30:1076:-96.3171,-9.0309,0	1/1:67:0,67:0:0:67:2404:-214.344,-20.169,0	1/1:119:1,118:1:36:118:4206:-370.131,-32.6349,0	1/1:25:0,25:0:0:25:900:-78.4767,-7.52575,0	1/1:56:0,56:0:0:56:1974:-173.519,-16.8577,0	1/1:45:0,45:0:0:45:1616:-141.016,-13.5464,0	1/1:8:0,8:0:0:8:288:-26.021,-2.40824,0	0/1:37:21,16:21:737:16:576:-40.5641,0,-46.9444	0/1:55:47,8:47:1680:8:288:-9.48108,0,-115.199	1/1:77:0,77:0:0:77:2753:-244.068,-23.1793,0	1/1:74:0,74:0:0:74:2651:-235.116,-22.2762,0
chr12	13707432	.	A	G	22153.3	PASS	AB=0.546281;ABP=60.2944;AC=40;AF=0.215054;AN=186;AO=1701;CIGAR=1X;DP=6758;DPB=6758;DPRA=1.26643;EPP=3696.68;EPPR=10982;GTI=4;LEN=1;MEANALT=1.02128;MQM=33.281;MQMR=45.8386;NS=93;NUMALT=1;ODDS=1.1365;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60636;QR=178547;RO=5056;RPL=1701;RPP=3696.68;RPPR=10982;RPR=0;RUN=1;SAF=1701;SAP=3696.68;SAR=0;SRF=5056;SRP=10982;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:31:18,13:18:636:13:464:-26.3826,0,-46.9129	0/0:113:113,0:113:4024:0:0:0,-34.0164,-354.729	0/1:109:47,62:47:1653:62:2206:-138.925,0,-113.737	0/0:91:91,0:91:3189:0:0:0,-27.3937,-281.896	0/1:29:13,16:13:455:16:542:-34.3094,0,-32.2226	0/1:22:6,16:6:212:16:576:-36.9655,0,-12.5552	0/0:82:82,0:82:2904:0:0:0,-24.6845,-257.741	0/1:121:50,71:50:1772:71:2539:-160.321,0,-119.11	0/0:57:57,0:57:1976:0:0:0,-17.1587,-175.035	0/0:98:98,0:98:3473:0:0:0,-29.5009,-307.664	0/0:19:19,0:19:661:0:0:0,-5.71957,-58.6697	0/0:44:43,1:43:1524:1:36:0,-10.1217,-131.07	0/0:40:40,0:40:1432:0:0:0,-12.0412,-126.1	0/0:31:31,0:31:1112:0:0:0,-9.33193,-98.8694	0/0:37:37,0:37:1320:0:0:0,-11.1381,-117.114	0/0:38:38,0:38:1348:0:0:0,-11.4391,-120.348	0/0:35:35,0:35:1240:0:0:0,-10.536,-108.972	0/0:37:37,0:37:1312:0:0:0,-11.1381,-115.12	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.7722	0/1:159:70,89:70:2472:89:3154:-201.729,0,-170.768	0/1:126:56,70:56:1983:70:2512:-161.77,0,-138.364	0/1:77:28,49:28:981:49:1756:-116.499,0,-64.4974	0/0:52:52,0:52:1837:0:0:0,-15.6536,-163.869	0/0:127:120,7:120:4222:7:252:0,-17.83,-354.174	0/0:65:64,1:64:2228:1:36:0,-16.3793,-194.926	0/1:192:103,89:103:3633:89:3187:-194.868,0,-265.582	0/0:145:145,0:145:5123:0:0:0,-43.6493,-456.918	0/0:17:17,0:17:612:0:0:0,-5.11751,-54.2419	0/1:222:106,115:106:3749:115:4103:-260.241,0,-265.509	0/1:122:52,70:52:1837:70:2496:-162.269,0,-126.078	0/0:95:94,1:94:3294:1:36:0,-25.4102,-289.554	0/1:5:1,4:1:36:4:144:-10.2891,0,-2.06166	0/1:7:4,3:4:136:3:108:-6.81814,0,-9.88722	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.54852	1/1:3:0,3:0:0:3:108:-8.74619,-0.90309,0	0/1:3:1,2:1:36:2:72:-5.03182,0,-2.64543	0/1:176:78,98:78:2768:98:3499:-223.159,0,-193.98	0/1:172:95,77:95:3349:77:2768:-165.75,0,-246.049	0/0:24:24,0:24:844:0:0:0,-7.22472,-74.9215	.:.:.:.:.:.:.:.	0/0:89:89,0:89:3160:0:0:0,-26.7917,-279.948	0/0:16:16,0:16:560:0:0:0,-4.81648,-49.8489	0/0:116:116,0:116:4112:0:0:0,-34.9195,-365.607	0/0:37:37,0:37:1315:0:0:0,-11.1381,-116.974	0/1:57:23,34:23:807:34:1212:-78.0824,0,-54.8684	0/1:55:23,32:23:824:32:1152:-73.4941,0,-56.01	0/0:110:108,2:108:3799:2:72:0,-28.0718,-330.721	0/0:207:207,0:207:7314:0:0:0,-62.3132,-651.581	0/0:137:137,0:137:4788:0:0:0,-41.2411,-423.783	0/0:96:96,0:96:3404:0:0:0,-28.8989,-302.13	0/1:138:55,83:55:1928:83:2935:-191.772,0,-129.701	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.6321	0/0:119:119,0:119:4231:0:0:0,-35.8226,-374.059	0/0:25:25,0:25:881:0:0:0,-7.52575,-78.5964	0/1:14:5,9:5:172:9:309:-20.0348,0,-11.4284	0/0:118:117,1:117:4151:1:36:0,-33.3384,-365.897	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.0738	0/1:12:2,10:2:68:10:360:-25.2739,0,-2.61439	0/1:17:10,7:10:356:7:248:-15.1005,0,-26.6493	0/0:55:55,0:55:1944:0:0:0,-16.5566,-172.952	0/1:73:31,42:31:1100:42:1477:-95.8401,0,-75.9024	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.0574	0/0:148:148,0:148:5237:0:0:0,-44.5524,-466.392	0/1:180:76,104:76:2691:104:3715:-238.141,0,-185.565	0/0:55:53,2:53:1875:2:72:0,-10.5002,-161.335	0/1:73:37,36:37:1300:36:1280:-78.6777,0,-94.4098	0/1:110:61,49:61:2144:49:1742:-102.659,0,-158.51	0/1:46:22,24:22:769:24:860:-55.0854,0,-55.1164	0/1:9:4,5:4:140:5:165:-10.9338,0,-10.1361	0/1:92:46,46:46:1616:46:1652:-101.776,0,-116.063	0/1:60:29,31:29:1035:31:1108:-70.7727,0,-74.0172	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.3436	0/1:94:39,55:39:1341:55:1957:-123.888,0,-90.8734	0/1:69:29,40:29:1021:40:1436:-91.4967,0,-68.6123	0/1:125:56,69:56:1942:69:2472:-158.495,0,-135.371	0/0:149:149,0:149:5252:0:0:0,-44.8535,-468.345	0/1:59:36,23:36:1276:23:807:-45.5465,0,-95.5027	0/1:118:50,68:50:1776:68:2440:-152.482,0,-121.844	0/1:14:10,4:10:356:4:144:-7.34304,0,-27.7406	0/0:107:107,0:107:3756:0:0:0,-32.2102,-332.469	0/0:72:72,0:72:2544:0:0:0,-21.6742,-225.174	0/0:160:160,0:160:5675:0:0:0,-48.1648,-504.667	0/0:76:76,0:76:2699:0:0:0,-22.8783,-240.028	0/0:28:28,0:28:988:0:0:0,-8.42884,-88.5221	0/0:65:65,0:65:2271:0:0:0,-19.5669,-202.63	0/0:116:115,1:115:4095:1:36:0,-31.7319,-361.045	0/0:25:25,0:25:900:0:0:0,-7.52575,-78.4767	0/0:57:57,0:57:2023:0:0:0,-17.1587,-176.877	0/0:45:45,0:45:1596:0:0:0,-13.5463,-139.348	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.021	0/1:38:16,22:16:560:22:788:-50.5542,0,-38.894	0/1:53:8,45:8:288:45:1567:-108.067,0,-10.0831	0/0:76:76,0:76:2680:0:0:0,-22.8783,-238.747	0/0:73:73,0:73:2556:0:0:0,-21.9752,-226.718
chr12	13707507	.	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chr12	14425957	.	T	A	12030.4	PASS	AB=0.398639;ABP=186.576;AC=39;AF=0.209677;AN=186;AO=827;CIGAR=1X;DP=5134;DPB=5134;DPRA=1.12448;EPP=1798.82;EPPR=9340.34;GTI=5;LEN=1;MEANALT=1.06977;MQM=59.9674;MQMR=59.9805;NS=93;NUMALT=1;ODDS=0.0714515;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=29321;QR=153857;RO=4300;RPL=0;RPP=1798.82;RPPR=9340.34;RPR=827;RUN=1;SAF=827;SAP=1798.82;SAR=0;SRF=4300;SRP=9340.34;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:21:12,9:12:420:9:312:-22.0937,0,-31.8124	0/0:72:71,0:71:2537:0:0:0,-21.3731,-228.22	0/1:82:43,39:43:1525:39:1404:-101.975,0,-112.857	0/0:163:163,0:163:5832:0:0:0,-49.0679,-524.993	0/1:23:16,7:16:561:7:252:-16.1053,0,-43.8934	0/1:22:15,7:15:536:7:248:-16.0415,0,-41.9522	0/0:93:92,0:92:3296:0:0:0,-27.6948,-296.499	0/1:83:54,29:54:1936:29:1010:-66.2215,0,-149.531	0/0:36:36,0:36:1262:0:0:0,-10.8371,-113.878	0/0:106:106,0:106:3793:0:0:0,-31.9092,-341.566	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8542	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:120:69,51:69:2476:51:1809:-126.966,0,-186.97	0/1:101:64,37:64:2281:37:1328:-89.4182,0,-175.146	0/1:50:23,27:23:828:27:957:-71.3924,0,-59.7917	0/0:69:68,0:68:2432:0:0:0,-20.47,-218.776	0/0:94:91,3:91:3252:3:108:0,-18.2216,-282.818	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:191:114,77:114:4076:77:2760:-191.145,0,-309.53	0/0:140:140,0:140:5013:0:0:0,-42.1442,-451.313	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:143:87,56:87:3094:56:1970:-134.524,0,-235.638	0/1:55:32,23:32:1152:23:805:-56.2109,0,-87.4335	0/0:118:117,1:117:4196:1:36:0,-31.9233,-374.222	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	.:.:.:.:.:.:.:.	0/1:66:38,28:38:1356:28:1008:-71.1684,0,-102.473	0/1:102:61,41:61:2184:41:1449:-99.9988,0,-166.119	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:130:130,0:130:4664:0:0:0,-39.1339,-419.92	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:21:9,12:9:324:12:432:-32.8996,0,-23.1842	0/1:68:44,24:44:1561:24:830:-54.5423,0,-120.31	0/0:65:65,0:65:2317:0:0:0,-19.5669,-208.789	0/0:140:140,0:140:5005:0:0:0,-42.1442,-450.596	0/0:130:130,0:130:4642:0:0:0,-39.1339,-417.938	0/0:125:125,0:125:4473:0:0:0,-37.6287,-402.735	0/1:109:73,36:73:2597:36:1296:-84.1301,0,-201.165	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:105:105,0:105:3780:0:0:0,-31.6081,-340.397	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:14:11,3:11:396:3:104:-5.48839,0,-31.7683	0/0:86:86,0:86:3046:0:0:0,-25.8886,-274.368	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:16:13,3:13:468:3:108:-5.25869,0,-37.6432	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:47:28,19:28:990:19:684:-47.7419,0,-75.2609	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:151:151,0:151:5393:0:0:0,-45.4555,-485.501	0/1:125:78,47:78:2780:47:1665:-112.507,0,-212.813	0/0:60:59,1:59:2120:1:36:0,-14.4635,-187.47	0/1:51:26,25:26:932:25:900:-65.9685,0,-68.8463	0/1:66:44,22:44:1580:22:773:-50.0215,0,-122.624	0/1:61:31,30:31:1112:30:1046:-76.083,0,-82.0285	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:41:24,17:24:864:17:592:-41.2604,0,-65.7403	0/1:29:14,14:14:500:14:489:-35.5509,0,-36.5477	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:53:29,24:29:1029:24:834:-59.4185,0,-76.9666	0/1:32:19,13:19:684:13:464:-32.4645,0,-52.2574	0/1:93:61,32:61:2177:32:1148:-75.634,0,-167.971	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:25:12,13:12:432:13:446:-32.9369,0,-31.6954	0/1:63:41,22:41:1472:22:773:-50.9246,0,-113.811	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.956	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:195:192,2:192:6872:2:72:0,-51.9229,-611.677	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.344	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:22:21,0:21:756:0:0:0,-6.32163,-68.0074	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:15:4,10:4:140:10:345:-26.8079,0,-8.37232	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759
chr12	14425976	.	A	G	92390.9	PASS	AB=0.596899;ABP=171.341;AC=146;AF=0.784946;AN=186;AO=4282;CIGAR=1X;DP=5131;DPB=5131;DPRA=0;EPP=9231.9;EPPR=1811.89;GTI=6;LEN=1;MEANALT=1.08602;MQM=59.9785;MQMR=59.9679;NS=93;NUMALT=1;ODDS=0.781186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152722;QR=30149;RO=841;RPL=4274;RPP=9231.9;RPPR=1811.89;RPR=8;RUN=1;SAF=4282;SAP=9301.26;SAR=0;SRF=841;SRP=1829.22;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:9,11:9:309:11:370:-27.6022,0,-22.1201	1/1:70:0,69:0:0:69:2465:-221.851,-20.7711,0	0/1:82:39,43:39:1404:43:1531:-113.398,0,-101.975	1/1:162:0,162:0:0:162:5766:-519.055,-48.7669,0	0/1:24:8,16:8:288:16:572:-44.5887,0,-19.0427	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	1/1:91:0,91:0:0:91:3256:-293.261,-27.3937,0	0/1:81:28,53:28:1008:53:1900:-146.894,0,-66.6529	1/1:38:0,38:0:0:38:1342:-121.079,-11.4391,0	1/1:109:0,109:0:0:109:3897:-350.923,-32.8123,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	1/1:22:0,22:0:0:22:770:-69.6193,-6.62266,0	1/1:12:0,12:0:0:12:421:-38.2231,-3.61236,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:18:1,17:1:36:17:610:-51.6346,-1.82027,0	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:119:51,68:51:1832:68:2444:-184.392,0,-129.338	0/1:100:36,64:36:1296:64:2277:-175.087,0,-86.8409	0/1:49:26,23:26:936:23:813:-58.7386,0,-69.809	1/1:70:0,70:0:0:70:2482:-223.633,-21.0721,0	1/1:94:3,91:3:108:91:3264:-283.905,-18.2217,0	1/1:37:0,36:0:0:36:1280:-115.144,-10.8371,0	0/1:193:77,116:77:2752:116:4148:-315.405,0,-189.824	1/1:139:0,138:0:0:138:4893:-440.162,-41.5421,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:142:55,87:55:1980:87:3124:-238.639,0,-135.728	0/1:56:25,31:25:887:31:1103:-82.7221,0,-63.2904	1/1:120:1,118:1:36:118:4228:-377.121,-32.5642,0	0/1:9:1,8:1:32:8:279:-22.7383,0,-0.490043	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	.:.:.:.:.:.:.:.	0/1:65:27,38:27:968:38:1359:-103.043,0,-67.8704	0/1:103:41,62:41:1472:62:2210:-168.156,0,-101.77	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	1/1:96:1,95:1:36:95:3404:-302.976,-25.3006,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:130:0,130:0:0:130:4628:-416.638,-39.1339,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/1:68:24,44:24:864:44:1551:-119.411,0,-57.6125	1/1:65:0,65:0:0:65:2327:-209.689,-19.567,0	1/1:138:0,138:0:0:138:4936:-444.389,-41.5421,0	1/1:132:0,132:0:0:132:4712:-424.235,-39.736,0	1/1:125:0,125:0:0:125:4437:-399.5,-37.6288,0	0/1:108:37,70:37:1320:70:2480:-190.883,0,-86.5314	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:105:0,105:0:0:105:3713:-334.371,-31.6082,0	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0	1/1:31:0,31:0:0:31:1099:-99.2195,-9.33193,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:16:3,13:3:108:13:460:-36.9189,0,-5.25869	1/1:63:0,63:0:0:63:2248:-202.583,-18.9649,0	0/1:47:19,28:19:680:28:982:-74.5399,0,-47.3808	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:148:0,147:0:0:147:5246:-471.917,-44.2514,0	0/1:127:49,78:49:1749:78:2788:-212.93,0,-119.461	1/1:59:1,58:1:36:58:2080:-183.872,-14.1625,0	0/1:49:25,24:25:900:24:864:-63.3321,0,-66.5705	0/1:68:23,45:23:828:45:1601:-123.908,0,-54.3741	0/1:62:31,31:31:1112:31:1116:-82.0878,0,-81.7275	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:42:18,24:18:644:24:860:-65.0786,0,-45.6114	0/1:29:15,14:15:540:14:500:-36.6063,0,-40.2067	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:54:25,29:25:892:29:1035:-77.2074,0,-64.3441	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7641	0/1:90:33,57:33:1176:57:2026:-155.519,0,-79.0551	1/1:92:0,91:0:0:91:3259:-293.17,-27.3937,0	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6816	0/1:62:23,39:23:824:39:1400:-107.635,0,-55.8195	0/1:13:3,10:3:108:10:352:-28.1048,0,-6.16178	1/1:59:0,59:0:0:59:2115:-190.618,-17.7608,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:193:2,191:2:72:191:6806:-605.762,-51.2621,0	1/1:53:0,52:0:0:52:1854:-166.779,-15.6536,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:28:0,28:0:0:28:970:-87.6077,-8.42884,0	1/1:36:1,35:1:36:35:1226:-107.041,-7.23881,0	1/1:20:0,20:0:0:20:705:-63.7728,-6.0206,0	1/1:22:0,22:0:0:22:780:-70.5225,-6.62266,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	0/1:16:12,4:12:432:4:144:-8.49714,0,-34.4047	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.6268	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	1/1:28:0,28:0:0:28:984:-88.8707,-8.42884,0
chr12	14426164	.	A	G	8313.18	PASS	AB=0.370907;ABP=232.875;AC=37;AF=0.198925;AN=186;AO=592;CIGAR=1X;DP=4162;DPB=4162;DPRA=0.962287;EPP=1288.52;EPPR=7750.82;GTI=4;LEN=1;MEANALT=1.05;MQM=59.9341;MQMR=59.9557;NS=93;NUMALT=1;ODDS=3.16931;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=21171;QR=127710;RO=3568;RPL=592;RPP=1288.52;RPPR=7750.82;RPR=0;RUN=1;SAF=0;SAP=1288.52;SAR=592;SRF=0;SRP=7750.82;SRR=3568;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:51:41,10:41:1457:10:352:-16.6657,0,-116.071	0/0:143:143,0:143:5132:0:0:0,-43.0473,-462.02	0/1:17:9,8:9:320:8:284:-20.7858,0,-24.0248	0/1:22:15,7:15:536:7:252:-16.4063,0,-41.9522	0/0:52:52,0:52:1860:0:0:0,-15.6536,-167.68	0/1:58:45,13:45:1593:13:468:-24.9999,0,-126.199	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:66:37,29:37:1315:29:1031:-73.2346,0,-98.783	0/1:72:45,27:45:1601:27:968:-65.7632,0,-122.704	0/1:57:27,30:27:968:30:1076:-79.9941,0,-70.2787	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/0:44:43,1:43:1532:1:36:0,-9.64704,-134.575	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:95:64,31:64:2296:31:1112:-71.7759,0,-178.303	0/0:138:138,0:138:4952:0:0:0,-41.5421,-445.828	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:104:73,30:73:2615:30:1064:-64.7004,0,-204.231	0/1:53:32,21:32:1129:21:752:-52.0517,0,-85.9603	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	.:.:.:.:.:.:.:.	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:50:28,22:28:1004:22:788:-56.1933,0,-74.4322	0/1:63:33,30:33:1173:30:1076:-78.188,0,-86.9107	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:103:103,0:103:3684:0:0:0,-31.0061,-331.763	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.876	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:10:8,2:8:288:2:63:-2.9698,0,-23.2571	0/1:66:40,26:40:1421:26:928:-63.9703,0,-108.317	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.972	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.433	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/1:77:54,23:54:1925:23:828:-51.6648,0,-150.346	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:105:105,0:105:3776:0:0:0,-31.6081,-340.037	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:8:5,3:5:180:3:104:-7.29457,0,-14.1438	0/0:87:87,0:87:3097:0:0:0,-26.1896,-278.941	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.278	0/1:38:20,18:20:707:18:648:-47.2127,0,-52.5154	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:132:132,0:132:4732:0:0:0,-39.736,-426.038	0/1:106:64,42:64:2296:42:1504:-103.745,0,-174.992	0/0:75:74,1:74:2645:1:21:0,-20.4773,-236.195	0/1:43:25,18:25:900:18:640:-44.985,0,-68.3767	0/1:50:36,14:36:1292:14:504:-30.6466,0,-101.532	0/1:65:33,32:33:1184:32:1152:-84.4232,0,-87.3014	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:36:21,15:21:756:15:540:-38.0995,0,-57.5301	0/1:26:11,15:11:396:15:540:-41.1098,0,-28.156	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:106:67,39:67:2408:39:1396:-94.0272,0,-185.067	0/1:29:23,6:23:805:6:216:-11.0606,0,-64.0376	0/1:61:45,15:45:1616:15:540:-30.5149,0,-127.308	0/0:90:90,0:90:3217:0:0:0,-27.0927,-289.751	0/1:22:16,6:16:572:6:216:-13.1679,0,-45.1908	0/1:42:32,10:32:1144:10:360:-20.101,0,-90.6263	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:44:43,1:43:1544:1:36:0,-9.64704,-135.655	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:168:168,0:168:5990:0:0:0,-50.573,-539.205	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5007	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.3555	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:23:23,0:23:811:0:0:0,-6.92369,-73.31	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:32:15,17:15:540:17:604:-45.0576,0,-39.3036	0/1:12:5,7:5:180:7:248:-19.0518,0,-12.9397	0/0:83:83,0:83:2965:0:0:0,-24.9855,-267.082	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453
chr12	14498518	.	G	A	31664.4	PASS	AB=0.51765;ABP=12.822;AC=40;AF=0.212766;AN=188;AO=1892;CIGAR=1X;DP=7272;DPB=7272;DPRA=1.43958;EPP=4111.44;EPPR=11676.8;GTI=2;LEN=1;MEANALT=1.09091;MQM=59.9804;MQMR=59.9959;NS=94;NUMALT=1;ODDS=0.937675;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67443;QR=191529;RO=5376;RPL=0;RPP=4111.44;RPPR=11676.8;RPR=1892;RUN=1;SAF=0;SAP=4111.44;SAR=1892;SRF=0;SRP=11676.8;SRR=5376;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:99:44,55:44:1576:55:1954:-146.332,0,-112.33	0/0:65:65,0:65:2297:0:0:0,-19.5669,-206.988	0/1:155:66,89:66:2340:89:3159:-237.869,0,-164.198	0/0:157:157,0:157:5563:0:0:0,-47.2617,-500.797	0/1:54:28,26:28:995:26:924:-67.222,0,-73.6084	0/1:51:21,30:21:734:30:1071:-81.3491,0,-51.0279	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:161:84,77:84:3008:77:2751:-199.208,0,-222.485	0/0:116:116,0:116:4134:0:0:0,-34.9195,-372.244	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:18:18,0:18:617:0:0:0,-5.41854,-55.8497	0/0:6:6,0:6:204:0:0:0,-1.80618,-18.6934	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:141:69,72:69:2460:72:2567:-188.834,0,-179.21	0/1:132:72,60:72:2575:60:2113:-150.702,0,-192.263	0/1:154:40,113:40:1428:113:4031:-316.71,0,-82.5464	0/0:107:107,0:107:3784:0:0:0,-32.2102,-340.758	0/0:71:64,6:64:2287:6:216:0,-1.64141,-186.301	0/0:138:138,0:138:4902:0:0:0,-41.5421,-441.332	0/1:262:144,118:144:5116:118:4227:-301.735,0,-381.715	0/0:205:205,0:205:7274:0:0:0,-61.7111,-654.714	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:243:130,113:130:4612:113:3994:-286.501,0,-342.093	0/1:130:57,73:57:2027:73:2624:-197.273,0,-143.378	0/0:98:98,0:98:3487:0:0:0,-29.5009,-314.042	0/1:12:8,4:8:284:4:144:-9.70126,0,-22.291	0/1:45:31,14:31:1097:14:504:-32.1517,0,-85.4917	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:29:14,15:14:504:15:531:-39.392,0,-36.9682	0/1:45:21,24:21:756:24:852:-63.454,0,-54.8209	0/1:68:40,28:40:1431:28:1004:-70.2058,0,-108.617	0/1:165:68,97:68:2428:97:3465:-262.391,0,-169.106	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:101:101,0:101:3587:0:0:0,-30.404,-323.036	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:227:227,0:227:8095:0:0:0,-68.3338,-728.568	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:22:9,13:9:320:13:468:-35.837,0,-22.5197	0/1:121:46,74:46:1644:74:2652:-202.443,0,-111.765	0/0:144:144,0:144:5103:0:0:0,-43.3483,-459.416	0/0:199:199,0:199:7124:0:0:0,-59.905,-641.215	0/0:114:114,0:114:4057:0:0:0,-34.3174,-365.315	0/0:70:70,0:70:2511:0:0:0,-21.0721,-226.241	0/1:114:51,63:51:1803:63:2240:-167.547,0,-128.234	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/0:150:150,0:150:5361:0:0:0,-45.1545,-482.621	0/0:42:42,0:42:1486:0:0:0,-12.6433,-134.033	0/1:23:12,11:12:413:11:392:-28.6964,0,-30.5741	0/0:95:91,4:91:3248:4:144:0,-15.2842,-279.226	0/0:53:53,0:53:1871:0:0:0,-15.9546,-168.666	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	0/1:28:10,18:10:356:18:640:-49.5005,0,-23.9524	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.838	0/1:42:21,21:21:752:21:752:-55.363,0,-55.363	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:113:113,0:113:4034:0:0:0,-34.0164,-363.248	0/1:187:107,80:107:3813:80:2831:-198.735,0,-287.075	0/0:46:42,4:42:1496:4:144:0,-0.533762,-121.621	0/1:53:32,21:32:1148:21:752:-52.0517,0,-87.6752	0/1:186:100,86:100:3577:86:3047:-218.467,0,-266.144	0/1:136:57,78:57:2044:78:2783:-209.712,0,-143.233	0/1:10:3,7:3:99:7:252:-20.0187,0,-6.22628	0/1:28:12,16:12:432:16:572:-43.3846,0,-30.7924	0/1:35:14,21:14:504:21:741:-56.4755,0,-35.162	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:142:80,62:80:2843:62:2206:-156.058,0,-213.363	0/1:49:31,18:31:1108:18:644:-43.5401,0,-85.2805	0/1:175:62,113:62:2211:113:4025:-309.758,0,-146.574	0/0:89:89,0:89:3157:0:0:0,-26.7917,-284.355	0/1:169:69,100:69:2480:100:3579:-271.443,0,-172.579	0/1:46:31,15:31:1086:15:540:-35.0892,0,-84.1977	0/1:50:28,22:28:1008:22:792:-56.5542,0,-75.9849	0/0:89:89,0:89:3175:0:0:0,-26.7917,-285.974	0/0:81:81,0:81:2890:0:0:0,-24.3834,-260.335	0/0:226:225,1:225:8023:1:36:0,-64.4345,-718.493	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:57:57,0:57:2039:0:0:0,-17.1587,-183.781	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9546	0/0:34:34,0:34:1208:0:0:0,-10.235,-109.026	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:31:18,13:18:644:13:468:-33.1277,0,-48.9587	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	0/0:87:87,0:87:3093:0:0:0,-26.1896,-278.597	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031
chr12	15002289	.	CGCAG	GGCAA,GGCAG	71880.4	PASS	AB=0.503611,0.487196;ABP=3.18282,5.17892;AC=148,40;AF=0.787234,0.212766;AN=188;AO=2630,753;CIGAR=1X3M1X,1X4M;DP=3412;DPB=3412;DPRA=6.10394,1.1464;EPP=5670.64,1577.89;EPPR=0;GTI=2;LEN=5,1;MEANALT=1.76344,2.34884;MQM=53.1707,59.9695;MQMR=0;NS=94;NUMALT=2;ODDS=1.75906;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=92297,26826;QR=0;RO=0;RPL=5,7;RPP=5670.64,1577.89;RPPR=0;RPR=2625,746;RUN=1,1;SAF=2630,753;SAP=5713.98,1638.13;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:51:0,26,24:0:0:26,24:919,852:-144.153,-69.5404,-61.7136,-74.7292,0,-67.5045	1/1:37:0,37,0:0:0:37,0:1305,0:-117.482,-11.1381,0,-117.482,-11.1381,-117.482	1/2:28:0,17,11:0:0:17,11:592,392:-80.3239,-32.3087,-27.1912,-48.3679,0,-45.0566	1/1:45:0,45,0:0:0:45,0:1572,0:-141.609,-13.5464,0,-141.609,-13.5464,-141.609	1/2:21:0,11,10:0:0:11,10:394,360:-61.6873,-29.734,-26.4227,-32.3115,0,-29.3012	1/2:11:0,5,5:0:0:5,5:162,180:-27.6981,-14.6878,-13.1827,-12.9969,0,-11.4918	1/1:59:0,57,2:0:0:57,2:2023,72:-181.705,-17.1587,0,-175.83,-10.924,-175.228	1/2:42:0,20,21:0:0:20,21:708,752:-118.835,-61.3249,-55.3043,-57.506,0,-51.1844	1/1:49:0,48,0:0:0:48,0:1692,0:-151.657,-14.4494,0,-151.657,-14.4494,-151.657	1/1:31:0,31,0:0:0:31,0:1100,0:-98.8193,-9.33193,0,-98.8193,-9.33193,-98.8193	1/1:30:0,29,0:0:0:29,0:1014,0:-91.1583,-8.72987,0,-91.1583,-8.72987,-91.1583	1/1:41:0,40,0:0:0:40,0:1411,0:-126.448,-12.0412,0,-126.448,-12.0412,-126.448	1/1:36:0,36,0:0:0:36,0:1256,0:-113.056,-10.8371,0,-113.056,-10.8371,-113.056	1/1:30:0,30,0:0:0:30,0:1058,0:-95.2714,-9.0309,0,-95.2714,-9.0309,-95.2714	1/1:38:0,37,0:0:0:37,0:1307,0:-116.716,-11.1381,0,-116.716,-11.1381,-116.716	1/1:29:0,29,0:0:0:29,0:1002,0:-90.108,-8.72987,0,-90.108,-8.72987,-90.108	1/1:23:0,23,0:0:0:23,0:815,0:-73.2768,-6.92369,0,-73.2768,-6.92369,-73.2768	1/1:20:0,20,0:0:0:20,0:696,0:-62.7815,-6.0206,0,-62.7815,-6.0206,-62.7815	1/1:38:0,38,0:0:0:38,0:1310,0:-117.328,-11.4391,0,-117.328,-11.4391,-117.328	1/2:33:0,20,13:0:0:20,13:682,464:-93.2742,-38.1841,-32.1635,-55.44,0,-51.5266	1/2:70:0,42,28:0:0:42,28:1459,1000:-199.97,-81.8865,-69.2433,-118.436,0,-110.007	1/2:40:0,11,29:0:0:11,29:388,1036:-116.38,-84.824,-81.5127,-31.9095,0,-23.1796	1/1:34:0,33,1:0:0:33,1:1152,36:-102.923,-9.93399,0,-99.9847,-6.63675,-99.6837	1/2:84:0,74,10:0:0:74,10:2618,347:-240.868,-28.5533,-6.2771,-212.662,0,-209.652	1/1:33:0,32,0:0:0:32,0:1119,0:-99.4789,-9.63296,0,-99.4789,-9.63296,-99.4789	1/2:90:0,30,60:0:0:30,60:1039,2151:-259.942,-175.791,-166.76,-84.4996,0,-66.4378	1/1:63:0,63,0:0:0:63,0:2216,0:-197.929,-18.9649,0,-197.929,-18.9649,-197.929	1/1:21:0,21,0:0:0:21,0:743,0:-66.9773,-6.32163,0,-66.9773,-6.32163,-66.9773	1/2:51:0,26,25:0:0:26,25:914,877:-145.809,-71.7194,-63.8927,-74.44,0,-66.9142	1/2:42:0,20,21:0:0:20,21:702,756:-118.702,-61.6858,-55.6652,-57.0119,0,-50.6902	1/1:22:0,22,0:0:0:22,0:779,0:-70.3812,-6.62266,0,-70.3812,-6.62266,-70.3812	1/2:8:0,4,4:0:0:4,4:142,144:-23.6606,-12.1095,-10.9054,-11.9082,0,-10.7041	1/2:25:0,11,14:0:0:11,14:381,500:-72.0047,-41.1218,-37.8104,-31.2335,0,-27.019	1/1:2:0,2,0:0:0:2,0:72,0:-6.81953,-0.60206,0,-6.81953,-0.60206,-6.81953	1/1:14:0,12,1:0:0:12,1:421,32:-37.7711,-3.61236,0,-35.1949,-1.05391,-34.8939	1/2:6:0,3,3:0:0:3,3:108,108:-17.9595,-9.17208,-8.26899,-9.14675,0,-8.24366	1/2:124:0,63,61:0:0:63,61:2253,2168:-359.921,-177.024,-158.059,-183.252,0,-164.889	1/2:67:0,37,29:0:0:37,29:1317,1036:-190.781,-84.5476,-73.4095,-106.311,0,-97.5811	1/1:62:0,62,0:0:0:62,0:2126,0:-190.477,-18.6639,0,-190.477,-18.6639,-190.477	1/2:5:0,1,4:0:0:1,4:36,125:-13.2931,-10.3545,-10.0535,-3.2882,0,-2.08408	1/1:29:0,29,0:0:0:29,0:999,0:-89.8208,-8.72987,0,-89.8208,-8.72987,-89.8208	1/1:24:0,24,0:0:0:24,0:857,0:-77.2158,-7.22472,0,-77.2158,-7.22472,-77.2158	1/1:43:0,43,0:0:0:43,0:1518,0:-136.399,-12.9443,0,-136.399,-12.9443,-136.399	1/1:77:0,77,0:0:0:77,0:2668,0:-239.846,-23.1793,0,-239.846,-23.1793,-239.846	1/2:25:0,10,15:0:0:10,15:349,527:-71.5257,-43.2454,-40.2351,-28.6294,0,-24.1139	1/2:31:0,18,13:0:0:18,13:627,468:-89.2382,-38.5463,-33.1277,-51.0462,0,-47.1328	1/1:39:0,38,0:0:0:38,0:1344,0:-119.843,-11.4391,0,-119.843,-11.4391,-119.843	1/1:42:0,40,0:0:0:40,0:1413,0:-126.798,-12.0412,0,-126.798,-12.0412,-126.798	1/1:41:0,39,1:0:0:39,1:1378,36:-122.77,-11.7402,0,-119.832,-8.80273,-119.531	1/1:30:0,30,0:0:0:30,0:1061,0:-95.4027,-9.0309,0,-95.4027,-9.0309,-95.4027	1/2:80:0,41,38:0:0:41,38:1431,1334:-224.499,-108.561,-96.2186,-115.928,0,-104.489	1/1:3:0,3,0:0:0:3,0:108,0:-10.0679,-0.90309,0,-10.0679,-0.90309,-10.0679	1/1:31:0,31,0:0:0:31,0:1091,0:-97.5103,-9.33193,0,-97.5103,-9.33193,-97.5103	1/1:13:0,13,0:0:0:13,0:454,0:-41.0434,-3.91339,0,-41.0434,-3.91339,-41.0434	1/1:2:0,2,0:0:0:2,0:72,0:-6.81953,-0.60206,0,-6.81953,-0.60206,-6.81953	1/1:36:0,35,0:0:0:35,0:1225,0:-109.823,-10.5361,0,-109.823,-10.5361,-109.823	1/1:28:0,28,0:0:0:28,0:989,0:-89.0793,-8.42884,0,-89.0793,-8.42884,-89.0793	1/2:5:0,1,4:0:0:1,4:27,144:-14.2199,-12.1095,-11.8085,-2.39828,0,-1.19416	2/2:6:0,0,6:0:0:0,6:0,216:-19.7905,-19.7905,-19.7905,-1.80618,-1.80618,0	1/1:23:0,23,0:0:0:23,0:811,0:-73.1441,-6.92369,0,-73.1441,-6.92369,-73.1441	1/2:64:0,29,35:0:0:29,35:1037,1244:-186.135,-101.729,-92.9987,-84.7625,0,-74.2265	1/1:1:0,1,0:0:0:1,0:35,0:-3.49656,-0.30103,0,-3.49656,-0.30103,-3.49656	1/1:58:0,58,0:0:0:58,0:2044,0:-183.981,-17.4597,0,-183.981,-17.4597,-183.981	1/2:55:0,19,34:0:0:19,34:657,1216:-152.583,-99.2367,-93.5172,-53.4175,0,-43.1824	1/1:22:0,21,0:0:0:21,0:732,0:-65.4268,-6.32163,0,-65.4268,-6.32163,-65.4268	1/2:12:0,8,4:0:0:8,4:277,144:-34.5611,-12.1095,-9.70126,-22.8066,0,-21.6025	1/2:70:0,38,31:0:0:38,31:1333,1108:-198.7,-90.3486,-78.9094,-108.355,0,-99.0228	1/2:58:0,21,37:0:0:21,37:737,1313:-166.32,-107.332,-101.01,-59.3374,0,-48.1993	1/2:11:0,6,5:0:0:6,5:216,180:-32.6436,-15.0469,-13.2407,-17.9563,0,-16.4511	1/2:9:0,1,8:0:0:1,8:30,284:-25.8855,-23.4951,-23.1941,-2.69624,0,-0.288001	1/2:51:0,21,29:0:0:21,29:746,1040:-145.448,-84.8247,-78.5031,-60.6201,0,-51.8902	1/1:8:0,8,0:0:0:8,0:271,0:-24.7058,-2.40824,0,-24.7058,-2.40824,-24.7058	1/2:13:0,7,5:0:0:7,5:240,180:-34.0825,-14.7536,-12.6464,-19.385,0,-17.8799	1/2:18:0,7,11:0:0:7,11:245,388:-51.8158,-31.9459,-29.8387,-20.2202,0,-16.9089	1/2:56:0,34,22:0:0:34,22:1181,792:-160.592,-64.983,-54.748,-95.9638,0,-89.3411	1/1:26:0,26,0:0:0:26,0:912,0:-82.1716,-7.82678,0,-82.1716,-7.82678,-82.1716	1/2:22:0,14,8:0:0:14,8:475,288:-62.201,-23.8592,-19.6447,-38.6937,0,-36.2854	1/2:26:0,17,8:0:0:17,8:597,288:-71.9349,-23.5001,-18.3826,-48.4328,0,-46.0245	1/2:2:0,1,1:0:0:1,1:36,36:-6.22607,-3.29724,-2.99621,-3.2882,0,-2.98717	1/1:23:0,23,0:0:0:23,0:799,0:-72.002,-6.92369,0,-72.002,-6.92369,-72.002	1/1:22:0,22,0:0:0:22,0:745,0:-67.1522,-6.62266,0,-67.1522,-6.62266,-67.1522	1/1:63:0,63,0:0:0:63,0:2222,0:-199.897,-18.9649,0,-199.897,-18.9649,-199.897	1/1:59:0,59,0:0:0:59,0:2084,0:-187.484,-17.7608,0,-187.484,-17.7608,-187.484	1/1:20:0,20,0:0:0:20,0:705,0:-63.7137,-6.0206,0,-63.7137,-6.0206,-63.7137	1/1:47:0,47,0:0:0:47,0:1660,0:-149.35,-14.1484,0,-149.35,-14.1484,-149.35	1/1:88:0,87,0:0:0:87,0:3052,0:-274.256,-26.1896,0,-274.256,-26.1896,-274.256	1/1:32:0,32,0:0:0:32,0:1118,0:-100.562,-9.63296,0,-100.562,-9.63296,-100.562	1/1:32:0,31,0:0:0:31,0:1097,0:-98.1723,-9.33193,0,-98.1723,-9.33193,-98.1723	1/1:38:0,38,0:0:0:38,0:1339,0:-120.089,-11.4391,0,-120.089,-11.4391,-120.089	1/1:17:0,17,0:0:0:17,0:601,0:-54.2499,-5.11751,0,-54.2499,-5.11751,-54.2499	1/2:64:0,34,29:0:0:34,29:1200,1036:-181.8,-84.5188,-74.2838,-97.3334,0,-88.6035	1/2:53:0,19,33:0:0:19,33:661,1176:-148.905,-95.8591,-90.1395,-53.0441,0,-43.1101	1/1:36:0,36,0:0:0:36,0:1274,0:-113.848,-10.8371,0,-113.848,-10.8371,-113.848	1/1:73:0,72,0:0:0:72,0:2514,0:-225.862,-21.6742,0,-225.862,-21.6742,-225.862
chr12	15002301	.	CAAT	AAAG,CAAG	72344.9	PASS	AB=0.502604,0.494792;ABP=3.10078,3.37221;AC=148,40;AF=0.787234,0.212766;AN=188;AO=2641,772;CIGAR=1X2M1X,3M1X;DP=3425;DPB=3425.25;DPRA=6.12724,1.1357;EPP=5737.87,1679.39;EPPR=0;GTI=2;LEN=4,1;MEANALT=1.5914,2.09091;MQM=53.1537,59.9611;MQMR=0;NS=94;NUMALT=2;ODDS=0.465186;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=93237,27534;QR=0;RO=0;RPL=2641,772;RPP=5737.87,1679.39;RPPR=0;RPR=0,0;RUN=1,1;SAF=2641,772;SAP=5737.87,1679.39;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:51:0,27,24:0:0:27,24:968,849:-147.095,-69.5031,-61.3753,-77.9455,0,-70.7208	1/1:37:0,37,0:0:0:37,0:1323,0:-119.081,-11.1381,0,-119.081,-11.1381,-119.081	1/2:29:0,17,12:0:0:17,12:589,428:-82.9914,-35.2464,-30.1289,-48.0969,0,-44.4846	1/1:45:0,45,0:0:0:45,0:1599,0:-143.993,-13.5464,0,-143.993,-13.5464,-143.993	1/2:20:0,11,9:0:0:11,9:395,324:-58.8391,-26.7966,-23.4853,-32.4011,0,-29.6918	1/2:11:0,6,5:0:0:6,5:213,180:-32.321,-15.0469,-13.2407,-17.631,0,-16.1259	1/1:59:0,57,2:0:0:57,2:1986,72:-178.101,-17.1587,0,-172.226,-10.924,-171.623	1/2:41:0,20,21:0:0:20,21:709,739:-118.102,-60.5107,-54.4901,-57.9438,0,-51.6221	1/1:49:0,49,0:0:0:49,0:1749,0:-157.054,-14.7505,0,-157.054,-14.7505,-157.054	1/1:31:0,31,0:0:0:31,0:1096,0:-98.4607,-9.33193,0,-98.4607,-9.33193,-98.4607	1/1:30:0,30,0:0:0:30,0:1064,0:-95.9137,-9.0309,0,-95.9137,-9.0309,-95.9137	1/1:41:0,41,0:0:0:41,0:1438,0:-129.026,-12.3422,0,-129.026,-12.3422,-129.026	1/1:36:0,36,0:0:0:36,0:1261,0:-113.368,-10.8371,0,-113.368,-10.8371,-113.368	1/1:30:0,30,0:0:0:30,0:1065,0:-95.8936,-9.0309,0,-95.8936,-9.0309,-95.8936	1/1:38:0,38,0:0:0:38,0:1364,0:-121.81,-11.4391,0,-121.81,-11.4391,-121.81	1/1:29:0,29,0:0:0:29,0:1029,0:-92.5071,-8.72987,0,-92.5071,-8.72987,-92.5071	1/1:23:0,23,0:0:0:23,0:813,0:-73.0934,-6.92369,0,-73.0934,-6.92369,-73.0934	1/1:20:0,20,0:0:0:20,0:699,0:-62.9922,-6.0206,0,-62.9922,-6.0206,-62.9922	1/1:38:0,37,0:0:0:37,0:1306,0:-116.932,-11.1381,0,-116.932,-11.1381,-116.932	1/2:33:0,20,13:0:0:20,13:705,468:-95.6569,-38.5463,-32.5257,-57.4669,0,-53.5535	1/2:70:0,42,28:0:0:42,28:1450,985:-197.963,-80.5327,-67.8894,-117.779,0,-109.35	1/2:40:0,11,29:0:0:11,29:389,1025:-115.475,-83.8308,-80.5195,-31.9976,0,-23.2677	1/1:34:0,33,1:0:0:33,1:1145,36:-102.384,-9.93399,0,-99.446,-6.63675,-99.145	1/2:85:0,74,11:0:0:74,11:2629,396:-245.809,-32.6714,-10.3952,-213.496,0,-210.185	1/1:33:0,32,0:0:0:32,0:1129,0:-101.322,-9.63296,0,-101.322,-9.63296,-101.322	1/2:94:0,28,65:0:0:28,65:973,2336:-269.464,-190.581,-182.152,-78.886,0,-59.319	1/1:63:0,61,0:0:0:61,0:2138,0:-191.593,-18.3628,0,-191.593,-18.3628,-191.593	1/1:21:0,21,0:0:0:21,0:752,0:-67.7844,-6.32163,0,-67.7844,-6.32163,-67.7844	1/2:51:0,26,25:0:0:26,25:921,896:-148.167,-73.4346,-65.6078,-75.0876,0,-67.5619	1/2:43:0,20,23:0:0:20,23:716,816:-125.096,-66.838,-60.8174,-58.6143,0,-51.6906	1/1:22:0,22,0:0:0:22,0:784,0:-70.8304,-6.62266,0,-70.8304,-6.62266,-70.8304	1/2:8:0,4,4:0:0:4,4:143,144:-23.7506,-12.1095,-10.9054,-11.9994,0,-10.7953	1/2:25:0,11,14:0:0:11,14:369,504:-71.2525,-41.4837,-38.1723,-30.1143,0,-25.8999	1/1:2:0,2,0:0:0:2,0:68,0:-6.44566,-0.60206,0,-6.44566,-0.60206,-6.44566	1/1:14:0,13,1:0:0:13,1:458,36:-41.0892,-3.91339,0,-38.1511,-0.616145,-37.8501	1/2:6:0,3,3:0:0:3,3:108,108:-17.9595,-9.17208,-8.26899,-9.14675,0,-8.24366	1/2:124:0,63,61:0:0:63,61:2249,2177:-360.454,-177.832,-158.867,-182.979,0,-164.616	1/2:69:0,38,31:0:0:38,31:1361,1100:-199.092,-89.9086,-78.4694,-109.537,0,-100.205	1/1:62:0,62,0:0:0:62,0:2195,0:-196.145,-18.6639,0,-196.145,-18.6639,-196.145	1/2:5:0,1,4:0:0:1,4:35,140:-14.5816,-11.7405,-11.4394,-3.19039,0,-1.98627	1/1:29:0,29,0:0:0:29,0:994,0:-89.3911,-8.72987,0,-89.3911,-8.72987,-89.3911	1/1:24:0,24,0:0:0:24,0:861,0:-77.5754,-7.22472,0,-77.5754,-7.22472,-77.5754	1/1:43:0,43,0:0:0:43,0:1542,0:-138.473,-12.9443,0,-138.473,-12.9443,-138.473	1/1:77:0,77,0:0:0:77,0:2702,0:-242.813,-23.1793,0,-242.813,-23.1793,-242.813	1/2:25:0,10,15:0:0:10,15:359,525:-72.2414,-43.0626,-40.0523,-29.5333,0,-25.0178	1/2:31:0,18,13:0:0:18,13:639,468:-90.1685,-38.5463,-33.1277,-51.9789,0,-48.0655	1/1:39:0,39,0:0:0:39,0:1391,0:-124.072,-11.7402,0,-124.072,-11.7402,-124.072	1/1:42:0,42,0:0:0:42,0:1496,0:-134.322,-12.6433,0,-134.322,-12.6433,-134.322	1/1:41:0,40,1:0:0:40,1:1393,36:-124.573,-12.0412,0,-121.635,-8.74396,-121.334	1/1:30:0,29,0:0:0:29,0:1021,0:-91.575,-8.72987,0,-91.575,-8.72987,-91.575	1/2:83:0,41,42:0:0:41,42:1470,1484:-240.167,-121.208,-108.866,-119.313,0,-106.669	1/1:3:0,3,0:0:0:3,0:108,0:-10.0679,-0.90309,0,-10.0679,-0.90309,-10.0679	1/1:31:0,30,0:0:0:30,0:1059,0:-94.9594,-9.0309,0,-94.9594,-9.0309,-94.9594	1/1:13:0,13,0:0:0:13,0:442,0:-39.9635,-3.91339,0,-39.9635,-3.91339,-39.9635	1/1:2:0,2,0:0:0:2,0:72,0:-6.81953,-0.60206,0,-6.81953,-0.60206,-6.81953	1/1:36:0,36,0:0:0:36,0:1261,0:-113.434,-10.8371,0,-113.434,-10.8371,-113.434	1/1:28:0,28,0:0:0:28,0:988,0:-88.9949,-8.42884,0,-88.9949,-8.42884,-88.9949	1/2:5:0,1,4:0:0:1,4:36,144:-15.0435,-12.1095,-11.8085,-3.29354,0,-2.08942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chr12	15363181	.	T	A	34231.5	PASS	AB=0.528862;ABP=30.0846;AC=40;AF=0.212766;AN=188;AO=2001;CIGAR=1X;DP=8848;DPB=8848;DPRA=1.18345;EPP=4330.77;EPPR=14803.8;GTI=2;LEN=1;MEANALT=1.08333;MQM=59.9735;MQMR=60;NS=94;NUMALT=1;ODDS=0.252616;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71478;QR=244263;RO=6836;RPL=1999;RPP=4330.77;RPPR=14803.8;RPR=2;RUN=1;SAF=2001;SAP=4348.13;SAR=0;SRF=6836;SRP=14847.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:146:146,0:146:5196:0:0:0,-43.9504,-467.778	0/1:78:32,46:32:1148:46:1633:-123.777,0,-80.1495	0/0:214:214,0:214:7653:0:0:0,-64.4204,-688.805	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:25:11,14:11:388:14:504:-38.1723,0,-27.7316	0/0:176:175,1:175:6257:1:36:0,-49.383,-559.625	0/1:113:61,52:61:2175:52:1860:-133.663,0,-161.999	0/0:86:86,0:86:3068:0:0:0,-25.8886,-276.35	0/0:160:159,1:159:5681:1:36:0,-44.5665,-507.81	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/0:90:90,0:90:3216:0:0:0,-27.0927,-289.663	0/0:74:74,0:74:2643:0:0:0,-22.2762,-238.116	0/0:51:51,0:51:1812:0:0:0,-15.3525,-163.359	0/0:51:51,0:51:1814:0:0:0,-15.3525,-163.54	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/0:70:70,0:70:2490:0:0:0,-21.0721,-224.352	0/0:61:61,0:61:2180:0:0:0,-18.3628,-196.466	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:319:151,168:151:5428:168:6021:-445.963,0,-392.618	0/1:152:92,60:92:3300:60:2148:-147.831,0,-251.462	0/1:73:14,59:14:500:59:2094:-166.753,0,-23.361	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:37:35,2:35:1260:2:72:0,-4.30139,-106.869	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:355:157,198:157:5609:198:7009:-524.007,0,-398.066	0/0:226:224,1:224:8011:1:36:0,-64.4933,-717.413	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:336:162,174:162:5789:174:6215:-458.301,0,-419.978	0/1:139:73,66:73:2601:66:2370:-171.715,0,-192.494	0/0:97:97,0:97:3434:0:0:0,-29.1999,-309.273	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.8309	0/1:7:5,2:5:171:2:72:-4.72951,0,-13.6182	0/1:228:111,117:111:3953:117:4184:-308.106,0,-287.327	0/1:156:70,86:70:2512:86:3069:-229.287,0,-179.371	0/0:58:58,0:58:2063:0:0:0,-17.4597,-185.941	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:204:203,0:203:7254:0:0:0,-61.1091,-652.553	0/0:50:50,0:50:1765:0:0:0,-15.0515,-159.131	0/0:82:82,0:82:2936:0:0:0,-24.6845,-264.474	0/0:63:62,0:62:2211:0:0:0,-18.6639,-198.895	0/1:69:29,40:29:1044:40:1426:-107.866,0,-73.5037	0/1:45:24,21:24:864:21:745:-53.8271,0,-64.5362	0/0:119:119,0:119:4252:0:0:0,-35.8226,-382.86	0/0:156:156,0:156:5596:0:0:0,-46.9607,-503.761	0/0:162:162,0:162:5764:0:0:0,-48.7669,-518.877	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.753	0/1:182:83,99:83:2976:99:3548:-264.741,0,-213.285	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	0/0:125:125,0:125:4469:0:0:0,-37.6287,-402.379	0/0:45:45,0:45:1599:0:0:0,-13.5463,-144.199	0/1:21:6,15:6:212:15:536:-42.2532,0,-13.1032	0/0:147:147,0:147:5266:0:0:0,-44.2514,-474.074	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:4:3,1:3:93:1:36:-2.39415,0,-7.47261	0/1:15:9,6:9:309:6:216:-15.2751,0,-23.6253	0/0:78:78,0:78:2784:0:0:0,-23.4803,-250.801	0/1:102:49,52:49:1752:52:1855:-136.441,0,-127.2	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:334:334,0:334:11969:0:0:0,-100.544,-1077.06	0/1:112:50,62:50:1796:62:2228:-167.068,0,-128.207	0/0:77:72,5:72:2579:5:176:0,-6.99429,-216.174	0/1:109:53,56:53:1895:56:1999:-147.371,0,-138.015	0/1:134:76,58:76:2712:58:2084:-147.492,0,-203.986	0/1:120:33,86:33:1173:86:3066:-239.986,0,-69.6933	0/1:13:7,6:7:237:6:216:-15.8771,0,-17.7457	0/1:62:25,35:25:896:35:1256:-94.9237,0,-62.5388	0/1:65:42,23:42:1508:23:828:-55.2772,0,-116.448	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:140:62,78:62:2219:78:2781:-208.385,0,-157.83	0/1:58:32,26:32:1152:26:936:-67.0997,0,-86.5304	0/1:117:49,68:49:1745:68:2420:-182.833,0,-122.112	0/0:208:208,0:208:7426:0:0:0,-62.6142,-668.387	0/1:49:18,31:18:644:31:1116:-86.0012,0,-43.5401	0/1:152:76,76:76:2724:76:2725:-199.736,0,-199.646	0/1:16:4,12:4:144:12:428:-34.0423,0,-8.49714	0/0:120:119,1:119:4254:1:36:0,-32.5253,-379.44	0/0:101:100,1:100:3568:1:36:0,-26.8058,-317.728	0/0:175:173,0:173:6186:0:0:0,-52.0782,-556.497	0/0:108:108,0:108:3884:0:0:0,-32.5112,-349.753	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.43	0/0:141:139,0:139:4938:0:0:0,-41.8432,-444.211	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/0:73:73,0:73:2607:0:0:0,-21.9752,-234.878	0/0:71:71,0:71:2539:0:0:0,-21.3731,-228.76	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/1:66:41,25:41:1459:25:885:-60.0985,0,-111.737	0/1:63:23,40:23:824:40:1425:-109.581,0,-55.5184	0/0:141:140,1:140:4995:1:36:0,-38.847,-446.098	0/0:101:100,1:100:3564:1:36:0,-26.8058,-317.368
chr12	15363193	.	C	T	34692.5	PASS	AB=0.524608;ABP=22.7812;AC=40;AF=0.212766;AN=188;AO=1993;CIGAR=1X;DP=8928;DPB=8928;DPRA=1.12174;EPP=4330.75;EPPR=15055.7;GTI=1;LEN=1;MEANALT=1.06122;MQM=59.9975;MQMR=59.9991;NS=94;NUMALT=1;ODDS=0.596393;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=71081;QR=246105;RO=6932;RPL=1974;RPP=4167.3;RPPR=15003.6;RPR=19;RUN=1;SAF=1974;SAP=4167.3;SAR=19;SRF=6926;SRP=15003.6;SRR=6;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:145:145,0:145:5185:0:0:0,-43.6493,-466.788	0/1:79:32,47:32:1134:47:1680:-127.706,0,-78.5859	0/0:218:218,0:218:7768:0:0:0,-65.6245,-699.154	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/1:25:11,14:11:396:14:495:-37.3573,0,-28.457	0/0:182:181,1:181:6401:1:36:0,-51.1892,-572.581	0/1:112:61,51:61:2173:51:1811:-129.555,0,-162.119	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.286	0/0:162:161,1:161:5661:1:36:0,-45.1686,-506.012	0/0:40:40,0:40:1401:0:0:0,-12.0412,-126.385	0/0:90:90,0:90:3200:0:0:0,-27.0927,-288.225	0/0:74:74,0:74:2611:0:0:0,-22.2762,-235.237	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.839	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/0:48:48,0:48:1702:0:0:0,-14.4494,-153.464	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.73	0/0:63:63,0:63:2219:0:0:0,-18.9649,-199.972	0/0:47:47,0:47:1680:0:0:0,-14.1484,-151.487	0/1:317:154,163:154:5519:163:5835:-429.832,0,-401.408	0/1:150:91,59:91:3208:59:2090:-143.212,0,-243.787	0/1:80:15,64:15:527:64:2277:-181.05,0,-23.6195	0/0:36:36,0:36:1265:0:0:0,-10.8371,-114.15	0/0:37:35,2:35:1248:2:68:0,-4.6804,-106.167	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:348:155,193:155:5489:193:6878:-514.331,0,-389.379	0/0:224:223,1:223:7914:1:36:0,-63.8324,-708.687	0/0:33:33,0:33:1157:0:0:0,-9.93399,-104.434	0/1:345:166,178:166:5906:178:6341:-466.868,0,-427.736	0/1:140:77,63:77:2728:63:2239:-159.629,0,-203.618	0/0:99:99,0:99:3520:0:0:0,-29.802,-317.009	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/1:12:9,3:9:309:3:108:-6.46281,0,-24.5284	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:229:110,119:110:3921:119:4271:-315.63,0,-284.147	0/1:155:72,83:72:2558:83:2980:-221.772,0,-183.81	0/0:60:60,0:60:2122:0:0:0,-18.0618,-191.248	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:205:205,0:205:7256:0:0:0,-61.7111,-653.093	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/0:84:83,1:83:2941:1:36:0,-21.6882,-261.326	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/1:69:31,38:31:1108:38:1355:-101.479,0,-79.2599	0/1:52:25,27:25:887:27:955:-70.6113,0,-64.4946	0/0:123:123,0:123:4370:0:0:0,-37.0267,-393.474	0/0:157:157,0:157:5585:0:0:0,-47.2617,-502.772	0/0:165:165,0:165:5861:0:0:0,-49.6699,-527.602	0/0:134:134,0:134:4750:0:0:0,-40.338,-427.657	0/1:183:85,98:85:3037:98:3472:-257.604,0,-218.47	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/0:126:126,0:126:4511:0:0:0,-37.9298,-406.157	0/0:51:50,1:50:1779:1:36:0,-11.7543,-156.794	0/1:20:5,15:5:180:15:532:-42.1925,0,-10.5315	0/0:148:148,0:148:5259:0:0:0,-44.5524,-473.446	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/0:79:79,0:79:2777:0:0:0,-23.7814,-250.17	0/1:100:48,52:48:1700:52:1872:-138.656,0,-123.18	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:329:329,0:329:11699:0:0:0,-99.0389,-1052.78	0/1:114:49,64:49:1755:64:2304:-173.352,0,-123.965	0/0:79:75,4:75:2672:4:144:0,-10.4678,-227.41	0/1:112:56,56:56:1961:56:2005:-147.007,0,-143.046	0/1:136:78,58:78:2755:58:2066:-145.27,0,-207.246	0/1:120:34,86:34:1192:86:3092:-242.383,0,-71.4588	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:63:28,35:28:986:35:1243:-93.209,0,-70.0873	0/1:63:41,22:41:1463:22:774:-51.016,0,-113	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/1:142:66,76:66:2342:76:2711:-201.487,0,-168.292	0/1:58:33,25:33:1188:25:879:-61.9671,0,-89.7689	0/1:115:48,67:48:1674:67:2384:-180.197,0,-116.324	0/0:211:211,0:211:7480:0:0:0,-63.5173,-673.246	0/1:50:19,31:19:680:31:1103:-84.5283,0,-46.4777	0/1:155:79,76:79:2821:76:2715:-197.934,0,-207.468	0/1:16:4,12:4:140:12:432:-34.4047,0,-8.1281	0/0:123:122,1:122:4356:1:36:0,-33.4284,-388.615	0/0:100:99,1:99:3506:1:36:0,-26.5047,-312.151	0/0:177:177,0:177:6256:0:0:0,-53.2823,-563.137	0/0:111:111,0:111:3948:0:0:0,-33.4143,-355.512	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/0:80:80,0:80:2855:0:0:0,-24.0824,-257.188	0/0:142:142,0:142:5032:0:0:0,-42.7463,-453.027	0/0:28:28,0:28:974:0:0:0,-8.42884,-87.9707	0/0:72:72,0:72:2560:0:0:0,-21.6742,-230.651	0/0:72:72,0:72:2553:0:0:0,-21.6742,-230.017	0/0:19:19,0:19:671:0:0:0,-5.71957,-60.7158	0/1:66:41,25:41:1459:25:878:-59.4671,0,-111.737	0/1:61:22,39:22:772:39:1364:-104.691,0,-51.4384	0/0:140:140,0:140:4986:0:0:0,-42.1442,-448.887	0/0:101:100,1:100:3531:1:36:0,-26.8058,-314.4
chr12	15363221	.	AAC	TAC,TAT	212309	PASS	AB=0.4461,0.552585;ABP=118.18,112.631;AC=148,40;AF=0.787234,0.212766;AN=188;AO=7347,2567;CIGAR=1X2M,1X1M1X;DP=9932;DPB=9932;DPRA=21.3484,1.27505;EPP=15948.1,5577.18;EPPR=5.18177;GTI=5;LEN=1,3;MEANALT=1.64516,2.15217;MQM=59.8869,58.4967;MQMR=60;NS=94;NUMALT=2;ODDS=0.490485;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=261894,90069;QR=28;RO=1;RPL=0,0;RPP=15956.8,5577.18;RPPR=5.18177;RPR=7347,2567;RUN=1,1;SAF=1,0;SAP=15948.1,5577.18;SAR=7346,2567;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:25:0,11,14:0:0:11,14:388,489:-71.7044,-40.1094,-36.798,-31.946,0,-27.7316	1/1:158:0,156,0:0:0:156,0:5588,0:-502.681,-46.9607,0,-502.681,-46.9607,-502.681	1/2:277:0,140,137:0:0:140,137:4992,4839:-800.816,-393.89,-351.746,-407.28,0,-366.039	1/1:177:0,177,0:0:0:177,0:6298,0:-566.914,-53.2823,0,-566.914,-53.2823,-566.914	2/2:23:0,2,21:0:0:2,21:72,745:-67.0086,-61.1333,-60.5313,-6.32163,-0.0869677,0	1/2:24:0,3,21:0:0:3,21:108,744:-69.5338,-60.7207,-59.8176,-9.17208,0,-2.85045	1/1:197:0,196,1:0:0:196,1:6999,36:-629.615,-59.0019,0,-626.678,-55.7046,-626.377	1/2:112:0,52,60:0:0:52,60:1845,2112:-322.217,-171.91,-156.256,-150.661,0,-132.599	1/1:102:0,102,0:0:0:102,0:3647,0:-328.429,-30.7051,0,-328.429,-30.7051,-328.429	1/1:152:1,149,0:1:28:149,0:5333,0:-477.201,-42.6614,0,-477.502,-44.8535,-479.72	1/1:106:0,105,1:0:0:105,1:3750,34:-337.359,-31.6082,0,-334.601,-28.5103,-334.3	1/1:80:0,80,0:0:0:80,0:2828,0:-254.738,-24.0824,0,-254.738,-24.0824,-254.738	1/1:79:0,78,0:0:0:78,0:2779,0:-250.057,-23.4803,0,-250.057,-23.4803,-250.057	1/1:98:0,98,0:0:0:98,0:3509,0:-315.749,-29.5009,0,-315.749,-29.5009,-315.749	1/1:62:0,62,0:0:0:62,0:2203,0:-198.535,-18.6639,0,-198.535,-18.6639,-198.535	1/1:78:0,78,0:0:0:78,0:2791,0:-251.426,-23.4803,0,-251.426,-23.4803,-251.426	1/1:107:0,107,0:0:0:107,0:3830,0:-344.536,-32.2102,0,-344.536,-32.2102,-344.536	1/1:62:0,62,0:0:0:62,0:2228,0:-200.779,-18.6639,0,-200.779,-18.6639,-200.779	1/1:66:0,66,0:0:0:66,0:2364,0:-213.009,-19.868,0,-213.009,-19.868,-213.009	1/2:261:0,128,133:0:0:128,133:4563,4652:-750.457,-378.505,-339.973,-372.306,0,-332.269	1/2:216:0,98,118:0:0:98,118:3467,4118:-616.811,-334.692,-305.191,-282.471,0,-246.949	1/2:106:0,25,80:0:0:25,80:892,2827:-303.035,-230.317,-222.791,-72.8007,0,-48.7183	1/1:63:0,62,1:0:0:62,1:2216,36:-199.345,-18.6639,0,-196.407,-15.3666,-196.106	1/1:148:0,139,9:0:0:139,9:4963,320:-446.465,-41.8432,0,-420.39,-15.4132,-417.681	1/1:51:0,50,0:0:0:50,0:1787,0:-160.773,-15.0515,0,-160.773,-15.0515,-160.773	1/2:348:0,160,186:0:0:160,186:5698,6531:-995.917,-531.497,-483.332,-464.523,0,-408.531	1/1:271:0,271,0:0:0:271,0:9657,0:-868.808,-81.5791,0,-868.808,-81.5791,-868.808	1/1:43:0,42,1:0:0:42,1:1504,36:-135.295,-12.6433,0,-132.358,-9.34646,-132.057	1/2:415:0,188,227:0:0:188,227:6687,7954:-1192.31,-647.349,-590.755,-545.314,0,-476.98	1/2:130:0,58,72:0:0:58,72:2074,2537:-375.864,-206.749,-189.289,-169.47,0,-147.796	1/1:134:0,134,0:0:0:134,0:4800,0:-432.156,-40.338,0,-432.156,-40.338,-432.156	1/1:4:0,4,0:0:0:4,0:129,0:-11.9273,-1.20412,0,-11.9273,-1.20412,-11.9273	1/2:5:0,4,1:0:0:4,1:144,34:-14.8632,-3.0976,-1.89348,-12.1095,0,-11.8085	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:9:0,1,8:0:0:1,8:36,286:-26.603,-23.6653,-23.3643,-3.29724,0,-0.889005	1/2:4:0,2,2:0:0:2,2:72,72:-12.1063,-6.23141,-5.62935,-6.23466,0,-5.6326	1/2:204:0,98,106:0:0:98,106:3486,3685:-583.754,-299.887,-270.386,-284.219,0,-252.31	1/2:169:0,64,105:0:0:64,105:2284,3672:-485.095,-298.893,-279.628,-186.555,0,-154.947	1/1:112:0,112,0:0:0:112,0:3988,0:-359.104,-33.7154,0,-359.104,-33.7154,-359.104	2/2:5:0,0,5:0:0:0,5:0,178:-16.3668,-16.3668,-16.3668,-1.50515,-1.50515,0	1/1:158:0,156,1:0:0:156,1:5526,29:-497.141,-46.9607,0,-494.833,-44.6873,-494.532	1/1:49:0,48,0:0:0:48,0:1702,0:-153.104,-14.4494,0,-153.104,-14.4494,-153.104	1/1:95:0,95,0:0:0:95,0:3395,0:-305.759,-28.5979,0,-305.759,-28.5979,-305.759	1/1:95:0,95,0:0:0:95,0:3394,0:-305.676,-28.5979,0,-305.676,-28.5979,-305.676	1/2:80:0,41,39:0:0:41,39:1456,1374:-230.674,-112.033,-99.6912,-118.994,0,-107.254	1/2:102:0,43,59:0:0:43,59:1528,2103:-296.292,-171.779,-158.835,-124.869,0,-107.108	1/1:64:0,64,0:0:0:64,0:2238,0:-201.682,-19.2659,0,-201.682,-19.2659,-201.682	1/1:104:0,104,0:0:0:104,0:3711,0:-334.192,-31.3071,0,-334.192,-31.3071,-334.192	1/1:127:0,127,0:0:0:127,0:4521,0:-407.052,-38.2308,0,-407.052,-38.2308,-407.052	1/1:165:0,165,0:0:0:165,0:5884,0:-529.673,-49.67,0,-529.673,-49.67,-529.673	1/2:250:0,99,150:0:0:99,150:3528,5267:-716.111,-428.536,-398.734,-287.569,0,-242.415	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:104:0,104,0:0:0:104,0:3698,0:-333.023,-31.3071,0,-333.023,-31.3071,-333.023	1/1:23:0,23,0:0:0:23,0:816,0:-73.7617,-6.92369,0,-73.7617,-6.92369,-73.7617	1/2:12:0,6,6:0:0:6,6:216,216:-35.5995,-17.9749,-16.1687,-17.9843,0,-16.1782	1/1:81:0,81,0:0:0:81,0:2878,0:-259.247,-24.3834,0,-259.247,-24.3834,-259.247	1/1:35:0,34,1:0:0:34,1:1211,36:-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chr12	15783127	.	G	A	177167	PASS	AB=0.501439;ABP=3.06655;AC=150;AF=0.797872;AN=188;AO=6440;CIGAR=1X;DP=8018;DPB=8018;DPRA=0;EPP=196.745;EPPR=30.8283;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9924;MQMR=59.9936;NS=94;NUMALT=1;ODDS=2.20648;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229988;QR=56043;RO=1574;RPL=6429;RPP=13891.9;RPPR=3386.25;RPR=11;RUN=1;SAF=2832;SAP=206.055;SAR=3608;SRF=712;SRP=34.051;SRR=862;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:52:30,22:30:1072:22:788:-55.5912,0,-81.1389	1/1:120:1,119:1:36:119:4252:-379.262,-32.5253,0	0/1:123:57,66:57:2036:66:2376:-177.071,0,-146.486	1/1:125:0,125:0:0:125:4465:-402.019,-37.6288,0	0/1:74:37,37:37:1324:37:1332:-97.9062,0,-97.1859	0/1:41:18,23:18:626:23:828:-62.5019,0,-44.3211	1/1:78:0,78:0:0:78:2785:-250.889,-23.4803,0	0/1:135:66,69:66:2359:69:2451:-180.206,0,-171.929	1/1:86:0,86:0:0:86:3068:-276.35,-25.8886,0	1/1:76:0,76:0:0:76:2732:-246.122,-22.8783,0	1/1:93:0,93:0:0:93:3303:-297.49,-27.9958,0	1/1:139:1,138:1:36:138:4882:-435.937,-38.2449,0	1/1:119:0,119:0:0:119:4264:-383.93,-35.8226,0	1/1:109:0,109:0:0:109:3874:-348.854,-32.8123,0	1/1:100:0,100:0:0:100:3579:-322.317,-30.103,0	1/1:113:0,113:0:0:113:4034:-363.248,-34.0164,0	1/1:89:1,88:1:36:88:3152:-280.307,-23.1934,0	1/1:70:0,70:0:0:70:2458:-221.473,-21.0721,0	1/1:82:0,82:0:0:82:2936:-264.474,-24.6845,0	0/1:138:69,69:69:2472:69:2466:-180.651,0,-181.192	0/1:139:72,67:72:2563:67:2383:-172.884,0,-189.077	0/1:29:18,11:18:644:11:396:-27.2529,0,-49.5607	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:64:4,60:4:144:60:2156:-180.993,-5.9523,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:198:101,96:101:3600:96:3434:-249.759,0,-264.694	1/1:139:0,139:0:0:139:4983:-448.617,-41.8432,0	1/1:56:0,56:0:0:56:1975:-178.021,-16.8577,0	0/1:131:78,53:78:2779:53:1908:-132.563,0,-210.916	0/1:46:24,22:24:835:22:779:-56.5847,0,-61.6192	1/1:99:2,97:2:72:97:3444:-303.251,-22.9652,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:264:129,135:129:4603:135:4843:-356.55,0,-334.963	0/1:68:19,49:19:680:49:1747:-137.043,0,-41.0591	1/1:105:0,105:0:0:105:3747:-337.431,-31.6082,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:111:0,111:0:0:111:3969:-357.399,-33.4143,0	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	1/1:114:0,114:0:0:114:4076:-367.026,-34.3174,0	1/1:115:0,115:0:0:115:4092:-368.464,-34.6185,0	0/1:101:48,53:48:1692:53:1871:-138.264,0,-122.162	0/1:56:29,27:29:1031:27:959:-69.7677,0,-76.2449	1/1:101:1,100:1:36:100:3572:-318.032,-26.8058,0	1/1:89:0,89:0:0:89:3204:-288.582,-26.7917,0	1/1:86:0,86:0:0:86:3067:-276.259,-25.8886,0	1/1:106:1,105:1:36:105:3776:-336.439,-28.3109,0	0/1:85:41,44:41:1472:44:1576:-116.544,0,-107.189	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:100:0,100:0:0:100:3580:-322.407,-30.103,0	1/1:33:0,33:0:0:33:1180:-106.508,-9.93399,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:79:0,79:0:0:79:2805:-252.687,-23.7814,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	0/1:13:4,9:4:140:9:324:-25.5925,0,-9.03119	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	0/1:133:68,65:68:2432:65:2319:-168.933,0,-179.099	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:116:0,116:0:0:116:4142:-372.963,-34.9195,0	0/1:99:43,56:43:1508:56:1991:-149.661,0,-106.208	1/1:75:5,70:5:176:70:2512:-210.147,-6.39223,0	0/1:44:21,23:21:752:23:815:-60.4254,0,-54.7609	0/1:94:52,42:52:1851:42:1504:-107.358,0,-138.572	0/1:105:65,40:65:2298:40:1421:-96.5773,0,-175.473	1/1:77:0,76:0:0:76:2708:-243.603,-22.8783,0	0/1:63:32,31:32:1143:31:1116:-81.7868,0,-84.2138	0/1:92:43,49:43:1510:49:1756:-130.629,0,-108.497	1/1:20:0,20:0:0:20:701:-63.4117,-6.0206,0	0/1:81:38,42:38:1343:42:1499:-110.879,0,-96.8441	0/1:86:34,52:34:1208:52:1872:-142.871,0,-83.1375	0/1:152:71,81:71:2536:81:2883:-213.95,0,-182.729	1/1:76:0,76:0:0:76:2709:-244.053,-22.8783,0	0/1:88:44,44:44:1576:44:1580:-116.001,0,-115.641	0/1:94:51,42:51:1813:42:1496:-106.677,0,-135.192	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	1/1:84:0,84:0:0:84:2995:-269.781,-25.2865,0	1/1:124:0,124:0:0:124:4429:-398.781,-37.3277,0	1/1:131:0,131:0:0:131:4665:-420.012,-39.4349,0	1/1:89:0,89:0:0:89:3179:-286.334,-26.7917,0	1/1:130:0,130:0:0:130:4635:-417.314,-39.1339,0	1/1:206:0,206:0:0:206:7342:-660.829,-62.0122,0	1/1:42:0,42:0:0:42:1496:-134.935,-12.6433,0	1/1:114:0,114:0:0:114:4065:-366.037,-34.3174,0	1/1:101:0,101:0:0:101:3592:-323.487,-30.404,0	1/1:86:0,86:0:0:86:3072:-276.709,-25.8886,0	0/1:158:76,82:76:2701:82:2931:-216.461,0,-195.77	0/1:96:57,39:57:2048:39:1400:-97.4003,0,-155.693	1/1:91:0,91:0:0:91:3246:-292.362,-27.3937,0	1/1:152:2,150:2:72:150:5382:-477.673,-38.9198,0
chr12	15793998	.	CA	CG,TG	296823	PASS	AB=0.33773,0.661229;ABP=1979.78,1954.49;AC=147,41;AF=0.781915,0.218085;AN=188;AO=9974,5755;CIGAR=1M1X,2X;DP=15746;DPB=15746;DPRA=84.6452,1.96618;EPP=21661.3,12499.8;EPPR=9.52472;GTI=10;LEN=1,2;MEANALT=1.72043,2.125;MQM=51.5846,31.2599;MQMR=60;NS=94;NUMALT=2;ODDS=15607.2;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=356858,204840;QR=108;RO=3;RPL=0,0;RPP=21661.3,12499.8;RPPR=9.52472;RPR=9974,5755;RUN=1,1;SAF=9974,5755;SAP=21661.3,12499.8;SAR=0,0;SRF=3;SRP=9.52472;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:77:0,26,51:0:0:26,51:932,1811:-193.071,-117.691,-109.864,-75.7139,0,-60.3614	1/1:249:1,247,1:1:36:247,1:8831,36:-784.455,-71.3604,0,-782.838,-72.4918,-785.474	1/2:289:0,121,168:0:0:121,168:4340,6013:-740.075,-390.172,-353.747,-350.232,0,-299.659	1/1:379:0,378,1:0:0:378,1:13521,36:-1211.13,-113.789,0,-1208.32,-110.636,-1208.02	1/2:117:0,39,78:0:0:39,78:1400,2774:-300.638,-186.746,-175.006,-114.23,0,-90.7501	1/2:63:0,22,40:0:0:22,40:788,1440:-151.408,-88.7824,-82.1597,-62.6998,0,-50.6586	1/1:295:0,294,1:0:0:294,1:10504,36:-941.22,-88.5028,0,-939.059,-86.0676,-938.758	1/2:286:0,119,166:0:0:119,166:4215,5906:-712.971,-375.009,-339.187,-337.926,0,-287.955	1/1:136:0,136,0:0:0:136,0:4883,0:-434.356,-40.9401,0,-434.356,-40.9401,-434.356	1/1:162:0,161,0:0:0:161,0:5736,0:-513.647,-48.4658,0,-513.647,-48.4658,-513.647	1/1:75:0,75,0:0:0:75,0:2677,0:-240.23,-22.5773,0,-240.23,-22.5773,-240.23	1/1:74:0,74,0:0:0:74,0:2639,0:-235.053,-22.2762,0,-235.053,-22.2762,-235.053	1/1:75:0,75,0:0:0:75,0:2692,0:-240.34,-22.5773,0,-240.34,-22.5773,-240.34	1/1:72:0,72,0:0:0:72,0:2576,0:-230.533,-21.6742,0,-230.533,-21.6742,-230.533	1/1:91:0,90,1:0:0:90,1:3215,36:-287.774,-27.0927,0,-284.966,-23.9392,-284.665	1/1:78:0,77,1:0:0:77,1:2752,36:-246.66,-23.1793,0,-243.912,-20.0927,-243.611	1/1:77:0,77,0:0:0:77,0:2764,0:-246.509,-23.1793,0,-246.509,-23.1793,-246.509	1/1:69:0,69,0:0:0:69,0:2480,0:-220.176,-20.7711,0,-220.176,-20.7711,-220.176	1/1:46:0,45,1:0:0:45,1:1611,34:-143.743,-13.5464,0,-141.176,-10.6598,-140.875	1/2:513:0,218,295:0:0:218,295:7813,10568:-1364.65,-730.112,-664.487,-634.877,0,-546.073	1/2:348:0,78,270:0:0:78,270:2777,9639:-876.461,-651.016,-627.536,-225.788,0,-144.51	1/2:241:0,42,199:0:0:42,199:1498,7073:-593.789,-471.939,-459.296,-122.196,0,-62.2912	1/1:178:0,178,0:0:0:178,0:6365,0:-570.866,-53.5833,0,-570.866,-53.5833,-570.866	1/1:199:0,186,13:0:0:186,13:6672,457:-596.875,-55.9916,0,-568.206,-27.0386,-564.292	1/1:116:0,116,0:0:0:116,0:4145,0:-370.939,-34.9195,0,-370.939,-34.9195,-370.939	1/2:665:0,162,503:0:0:162,503:5797,17878:-1585.13,-1113.7,-1064.93,-471.77,0,-320.352	1/1:259:0,258,0:0:0:258,0:9240,0:-827.422,-77.6657,0,-827.422,-77.6657,-827.422	1/1:56:0,56,0:0:0:56,0:2004,0:-179.901,-16.8577,0,-179.901,-16.8577,-179.901	1/2:707:0,222,484:0:0:222,484:7968,17206:-1716.08,-1068.23,-1001.4,-647.831,0,-502.133	1/2:180:0,67,113:0:0:67,113:2385,4012:-462.662,-269.896,-249.727,-193.098,0,-159.082	1/1:217:0,215,2:0:0:215,2:7714,72:-690.915,-64.7215,0,-686.593,-60.1247,-685.991	1/1:1:0,1,0:0:0:1,0:36,0:-3.29902,-0.30103,0,-3.29902,-0.30103,-3.29902	1/2:12:0,4,8:0:0:4,8:144,288:-29.3463,-17.6009,-16.3968,-12.076,0,-9.66779	1/1:3:0,3,0:0:0:3,0:108,0:-10.0205,-0.90309,0,-10.0205,-0.90309,-10.0205	1/2:3:0,2,1:0:0:2,1:72,36:-8.07972,-2.16588,-1.56382,-6.1976,0,-5.89657	2/2:2:0,0,2:0:0:0,2:0,72:-5.3718,-5.3718,-5.3718,-0.60206,-0.60206,0	1/2:435:0,125,310:0:0:125,310:4475,11030:-1043.88,-679.868,-642.239,-364.348,0,-271.029	1/2:269:0,84,185:0:0:84,185:2989,6625:-674.643,-432.167,-406.881,-242.811,0,-187.121	1/1:77:0,77,0:0:0:77,0:2752,0:-245.173,-23.1793,0,-245.173,-23.1793,-245.173	1/2:6:0,3,3:0:0:3,3:108,108:-16.5179,-7.89246,-6.98937,-8.95856,0,-8.05547	1/1:299:0,298,1:0:0:298,1:10634,36:-948.22,-89.7069,0,-945.472,-86.6204,-945.171	1/1:38:0,38,0:0:0:38,0:1368,0:-122.849,-11.4391,0,-122.849,-11.4391,-122.849	1/1:203:0,203,0:0:0:203,0:7268,0:-649.588,-61.1091,0,-649.588,-61.1091,-649.588	1/1:122:0,122,0:0:0:122,0:4388,0:-393.095,-36.7257,0,-393.095,-36.7257,-393.095	1/2:109:0,38,71:0:0:38,71:1351,2526:-278.192,-169.806,-158.367,-108.719,0,-87.3456	1/2:322:0,101,221:0:0:101,221:3605,7836:-757.927,-464.695,-434.291,-293.561,0,-227.033	1/1:172:0,172,0:0:0:172,0:6172,0:-550.582,-51.7772,0,-550.582,-51.7772,-550.582	1/1:203:0,203,0:0:0:203,0:7269,0:-651.217,-61.1091,0,-651.217,-61.1091,-651.217	1/1:172:0,172,0:0:0:172,0:6149,0:-550.47,-51.7772,0,-550.47,-51.7772,-550.47	1/1:141:0,141,0:0:0:141,0:5033,0:-450.95,-42.4452,0,-450.95,-42.4452,-450.95	1/2:490:0,149,340:0:0:149,340:5333,12082:-1184.72,-751.627,-706.774,-433.08,0,-330.73	1/1:10:0,10,0:0:0:10,0:356,0:-32.3136,-3.0103,0,-32.3136,-3.0103,-32.3136	1/1:328:0,328,0:0:0:328,0:11742,0:-1048.17,-98.7378,0,-1048.17,-98.7378,-1048.17	1/2:129:0,76,53:0:0:76,53:2724,1876:-300.479,-78.8884,-56.0101,-221.854,0,-205.9	1/2:13:0,4,9:0:0:4,9:144,322:-35.094,-23.4024,-22.1983,-12.0373,0,-9.32805	1/1:147:0,146,1:0:0:146,1:5206,36:-464.974,-43.9504,0,-462.227,-40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chr12	15794039	.	C	G	68181.4	PASS	AB=0.402357;ABP=979.613;AC=38;AF=0.202128;AN=188;AO=4779;CIGAR=1X;DP=18655;DPB=18655;DPRA=2.62965;EPP=10380.5;EPPR=30101.8;GTI=6;LEN=1;MEANALT=1.09091;MQM=36.5773;MQMR=50.507;NS=94;NUMALT=1;ODDS=2.9906;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=170320;QR=483596;RO=13869;RPL=3257;RPP=1370.79;RPPR=16022.2;RPR=1522;RUN=1;SAF=3257;SAP=1370.79;SAR=1522;SRF=11994;SRP=16034.9;SRR=1875;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:76:51,25:51:1756:25:887:-33.6314,0,-127.951	0/0:240:239,1:239:8317:1:36:0,-69.7803,-740	0/1:282:207,75:207:7189:75:2655:-81.2005,0,-535.81	0/0:360:360,0:360:12447:0:0:0,-108.371,-1114.53	0/1:116:79,37:79:2812:37:1316:-53.3748,0,-208.246	0/1:63:37,26:37:1311:26:932:-39.6063,0,-93.5379	0/0:280:279,1:279:9745:1:36:0,-81.5522,-871.13	0/1:274:197,76:197:6839:76:2696:-85.9321,0,-503.236	0/0:130:129,0:129:4453:0:0:0,-38.8329,-397.184	0/0:151:149,2:149:5178:2:72:0,-39.4968,-458.23	0/0:74:74,0:74:2528:0:0:0,-22.2762,-227.247	0/0:71:71,0:71:2373:0:0:0,-21.3731,-211.777	0/0:70:70,0:70:2446:0:0:0,-21.0721,-218.403	0/0:72:72,0:72:2466:0:0:0,-21.6742,-221.226	0/0:84:84,0:84:2942:0:0:0,-25.2865,-263.972	0/0:76:76,0:76:2666:0:0:0,-22.8783,-238.984	0/0:75:75,0:75:2613:0:0:0,-22.5772,-233.627	0/0:66:66,0:66:2319:0:0:0,-19.868,-205.843	0/0:45:45,0:45:1557:0:0:0,-13.5463,-138.804	0/1:493:356,137:356:12347:137:4910:-188.047,0,-939.403	0/1:343:223,120:223:7660:120:4254:-180.366,0,-559.029	0/1:471:228,243:228:8118:243:8659:-540.988,0,-579.38	0/0:168:168,0:168:5865:0:0:0,-50.573,-526.442	0/0:193:184,9:184:6390:9:324:0,-36.5458,-549.938	0/0:113:113,0:113:3933:0:0:0,-34.0164,-352.37	0/1:1392:724,665:724:25644:665:23719:-1389.65,0,-1872.39	0/0:250:250,0:250:8765:0:0:0,-75.2575,-785.805	0/0:53:53,0:53:1770:0:0:0,-15.9546,-159.147	0/1:1242:677,565:677:23756:565:20107:-1128.02,0,-1746.67	0/1:175:126,49:126:4421:49:1747:-63.5492,0,-328.838	0/0:212:210,2:210:7305:2:72:0,-58.6196,-649.515	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.29902	0/1:11:5,6:5:180:6:216:-11.256,0,-13.0136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0205	0/1:3:2,1:2:63:1:36:-1.56382,0,-5.05915	0/1:2:1,1:1:36:1:36:-1.86485,0,-2.58556	0/1:858:447,411:447:15734:411:14635:-848.638,0,-1145.96	0/1:259:153,106:153:5378:106:3808:-175.019,0,-391.377	0/0:74:74,0:74:2472:0:0:0,-22.2762,-220.934	0/1:6:5,1:5:157:1:36:-0.84242,0,-12.2532	0/0:284:284,0:284:9846:0:0:0,-85.4925,-880.644	0/0:36:36,0:36:1223:0:0:0,-10.8371,-110.055	0/0:200:200,0:200:6932:0:0:0,-60.206,-621.198	0/0:123:122,1:122:4173:1:36:0,-33.4375,-369.617	0/1:112:66,46:66:2265:46:1644:-81.4264,0,-164.955	0/1:504:270,234:270:9544:234:8344:-435.943,0,-701.857	0/0:166:166,0:166:5788:0:0:0,-49.971,-516.833	0/0:193:192,1:192:6717:1:36:0,-54.6443,-598.897	0/0:165:164,1:164:5717:1:36:0,-46.0869,-508.024	0/0:140:139,1:139:4838:1:36:0,-38.5459,-430.154	0/1:863:496,367:496:17404:367:13103:-704.451,0,-1289.44	0/0:9:9,0:9:275:0:0:0,-2.70927,-25.0214	0/0:314:314,0:314:10915:0:0:0,-94.5234,-974.588	0/1:220:123,97:123:4379:97:3444:-173.342,0,-327.425	0/0:13:12,1:12:411:1:36:0,-1.44648,-33.1911	0/0:139:139,0:139:4810:0:0:0,-41.8432,-430.894	0/0:94:94,0:94:3218:0:0:0,-28.2968,-288.844	0/1:27:17,10:17:608:10:360:-23.3507,0,-46.8938	0/1:73:44,29:44:1568:29:1035:-65.7958,0,-118.305	0/0:107:105,2:105:3669:2:63:0,-27.4146,-324.42	0/1:152:103,49:103:3596:49:1738:-75.5622,0,-269.923	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0609	0/1:887:520,366:520:18357:366:13086:-685.93,0,-1382.45	0/1:311:206,105:206:7107:105:3740:-165.235,0,-531.584	0/0:147:140,7:140:4900:7:233:0,-27.9522,-422.352	0/1:154:104,50:104:3590:50:1772:-75.8745,0,-266.806	0/1:338:232,106:232:8086:106:3780:-160.254,0,-604.303	0/1:302:193,109:193:6701:109:3895:-176.981,0,-493.862	0/0:22:22,0:22:769:0:0:0,-6.62266,-69.1745	0/1:178:124,54:124:4318:54:1916:-65.8912,0,-317.854	0/1:363:195,167:195:6860:167:5983:-322.396,0,-502.173	0/0:15:15,0:15:523:0:0:0,-4.51545,-47.2124	0/1:228:157,71:157:5535:71:2515:-88.3813,0,-406.959	0/1:146:110,36:110:3834:36:1283:-36.0742,0,-290.268	0/1:287:190,97:190:6613:97:3439:-143.576,0,-489.773	0/0:242:241,1:241:8371:1:36:0,-69.3948,-746.833	0/1:146:81,65:81:2822:65:2331:-100.768,0,-201.332	0/1:194:153,41:153:5358:41:1444:-32.4433,0,-406.523	0/0:8:8,0:8:271:0:0:0,-2.40824,-22.6068	0/0:146:146,0:146:5027:0:0:0,-43.9504,-450.617	0/0:137:136,1:136:4735:1:36:0,-38.7742,-420.874	0/0:285:284,1:284:9918:1:36:0,-82.2105,-884.361	0/0:110:110,0:110:3827:0:0:0,-33.1133,-343.715	0/0:110:109,1:109:3769:1:36:0,-30.3771,-335.261	0/0:109:109,0:109:3777:0:0:0,-32.8123,-338.618	0/0:162:161,1:161:5579:1:36:0,-45.2082,-496.914	0/0:60:60,0:60:2052:0:0:0,-18.0618,-182.799	0/0:118:118,0:118:4042:0:0:0,-35.5215,-361.229	0/0:95:95,0:95:3298:0:0:0,-28.5978,-294.839	0/0:38:38,0:38:1351:0:0:0,-11.4391,-119.914	0/1:99:62,37:62:2098:37:1296:-57.4947,0,-151.556	0/1:143:78,65:78:2675:65:2327:-116.908,0,-191.289	0/0:100:100,0:100:3497:0:0:0,-30.103,-313.077	0/0:111:111,0:111:3837:0:0:0,-33.4143,-343.423
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chr12	15794078	.	C	T	398698	PASS	AB=0.762207;ABP=5176.36;AC=150;AF=0.797872;AN=188;AO=18526;CIGAR=1X;DP=20610;DPB=20610;DPRA=0;EPP=40223;EPPR=4450.52;GTI=9;LEN=1;MEANALT=1;MQM=59.3362;MQMR=59.9679;NS=94;NUMALT=1;ODDS=6.78308;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=661452;QR=74584;RO=2084;RPL=18526;RPP=40231.7;RPPR=4450.52;RPR=0;RUN=1;SAF=1;SAP=40223;SAR=18525;SRF=0;SRP=4528.36;SRR=2084;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:117:30,87:30:1076:87:3101:-244.028,0,-61.9323	1/1:367:0,367:0:0:367:13046:-1173.28,-110.478,0	0/1:183:29,154:29:1040:154:5497:-439.334,0,-38.8259	1/1:505:0,505:0:0:505:17993:-1618.76,-152.02,0	0/1:133:45,88:45:1616:88:3156:-244.066,0,-105.693	0/1:117:30,87:30:1076:87:3071:-241.2,0,-61.9323	1/1:360:1,359:1:36:359:12800:-1147.85,-104.773,0	0/1:416:102,314:102:3641:314:11253:-886.164,0,-202.659	1/1:138:0,138:0:0:138:4941:-444.768,-41.5421,0	1/1:311:0,311:0:0:311:11067:-995.563,-93.6203,0	1/1:127:0,127:0:0:127:4564:-410.895,-38.2308,0	1/1:126:0,126:0:0:126:4502:-404.929,-37.9298,0	1/1:137:0,137:0:0:137:4887:-439.754,-41.2411,0	1/1:110:1,109:1:36:109:3893:-346.849,-29.515,0	1/1:138:0,138:0:0:138:4941:-444.656,-41.5421,0	1/1:118:0,118:0:0:118:4244:-382.004,-35.5215,0	1/1:117:0,117:0:0:117:4154:-373.978,-35.2205,0	1/1:105:0,105:0:0:105:3753:-337.838,-31.6082,0	1/1:69:0,69:0:0:69:2480:-223.415,-20.7711,0	0/1:613:126,487:126:4505:487:17327:-1374.28,0,-221.067	0/1:336:107,229:107:3820:229:8144:-631.11,0,-242.849	0/1:235:85,150:85:3040:150:5353:-411.006,0,-203.088	1/1:242:0,242:0:0:242:8653:-778.571,-72.8493,0	1/1:333:11,322:11:396:322:11506:-999.182,-64.2602,0	1/1:151:0,151:0:0:151:5404:-486.442,-45.4555,0	0/1:749:178,571:178:6362:571:20374:-1607.14,0,-347.199	1/1:347:0,347:0:0:347:12468:-1121.5,-104.457,0	1/1:68:0,68:0:0:68:2430:-218.862,-20.47,0	0/1:574:121,453:121:4336:453:16207:-1285.2,0,-217.624	0/1:218:54,164:54:1932:164:5851:-460.715,0,-108.532	1/1:394:5,389:5:176:389:13914:-1235.71,-102.421,0	1/1:15:1,14:1:36:14:504:-42.0998,-0.917175,0	0/1:50:7,43:7:248:43:1536:-123.437,0,-7.61269	1/1:14:0,14:0:0:14:489:-44.2606,-4.21442,0	0/1:15:6,9:6:216:9:324:-24.9849,0,-15.2751	0/1:24:6,18:6:216:18:644:-51.0528,0,-12.5658	0/1:430:106,324:106:3780:324:11583:-912.271,0,-210.955	0/1:293:57,236:57:2048:236:8427:-669.803,0,-96.3898	1/1:111:0,111:0:0:111:3952:-355.519,-33.4143,0	0/1:5:1,4:1:36:4:144:-11.8075,0,-2.09312	1/1:340:0,340:0:0:340:12153:-1093.33,-102.35,0	1/1:85:0,85:0:0:85:3043:-273.864,-25.5876,0	1/1:325:1,324:1:36:324:11555:-1035.91,-94.2365,0	1/1:167:0,167:0:0:167:5971:-537.446,-50.272,0	0/1:153:35,118:35:1256:118:4248:-336.21,0,-67.1806	0/1:201:42,159:42:1504:159:5696:-451.889,0,-75.1476	1/1:261:0,261:0:0:261:9350:-840.541,-78.5688,0	1/1:410:0,410:0:0:410:14606:-1314.07,-123.422,0	1/1:258:0,258:0:0:258:9226:-829.756,-77.6657,0	1/1:350:0,350:0:0:350:12554:-1129.37,-105.361,0	0/1:394:104,290:104:3721:290:10349:-812.651,0,-216.484	1/1:33:0,33:0:0:33:1180:-106.506,-9.93399,0	1/1:285:0,285:0:0:285:10205:-917.915,-85.7936,0	1/1:102:0,102:0:0:102:3660:-329.596,-30.7051,0	0/1:10:5,5:5:176:5:180:-13.5408,0,-13.1747	1/1:358:0,358:0:0:358:12751:-1146.55,-107.769,0	1/1:112:0,112:0:0:112:4028:-362.707,-33.7154,0	0/1:19:4,15:4:144:15:540:-43.1993,0,-7.59405	0/1:54:14,40:14:504:40:1436:-113.264,0,-29.4425	1/1:218:0,218:0:0:218:7763:-698.518,-65.6245,0	0/1:167:33,134:33:1184:134:4788:-380.715,0,-56.5963	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	1/1:534:0,534:0:0:534:19046:-1713.52,-160.75,0	0/1:437:89,348:89:3196:348:12423:-986.212,0,-156.313	1/1:123:3,120:3:108:120:4270:-374.152,-26.9515,0	0/1:224:49,175:49:1741:175:6236:-493.68,0,-89.5417	0/1:395:81,314:81:2904:314:11219:-890.221,0,-142.689	0/1:346:93,253:93:3344:253:9034:-708.699,0,-197.02	1/1:65:0,65:0:0:65:2305:-207.565,-19.567,0	0/1:197:39,158:39:1392:158:5634:-447.67,0,-66.2752	0/1:163:32,131:32:1148:131:4686:-372.488,0,-54.5619	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:210:45,165:45:1616:165:5916:-468.787,0,-82.5137	0/1:138:38,100:38:1368:100:3584:-281.079,0,-81.8787	0/1:332:64,268:64:2289:268:9588:-762.549,0,-106.328	1/1:445:0,445:0:0:445:15808:-1422.28,-133.958,0	0/1:179:54,125:54:1913:125:4465:-347.993,0,-118.561	0/1:246:58,188:58:2076:188:6682:-526.479,0,-113.047	0/1:23:9,14:9:320:14:502:-38.5823,0,-22.2187	1/1:325:0,325:0:0:325:11517:-1036.08,-97.8348,0	1/1:282:0,282:0:0:282:10082:-907.013,-84.8905,0	1/1:636:1,635:1:36:635:22695:-2037.95,-187.857,0	1/1:180:0,180:0:0:180:6436:-579.167,-54.1854,0	1/1:159:0,159:0:0:159:5689:-511.954,-47.8638,0	1/1:178:0,178:0:0:178:6316:-568.44,-53.5833,0	1/1:256:0,256:0:0:256:9111:-819.6,-77.0637,0	1/1:79:0,79:0:0:79:2825:-254.453,-23.7814,0	1/1:133:0,133:0:0:133:4776:-429.773,-40.037,0	1/1:122:0,122:0:0:122:4373:-393.4,-36.7257,0	1/1:62:0,62:0:0:62:2219:-199.906,-18.6639,0	0/1:144:47,97:47:1684:97:3474:-269.14,0,-108.499	0/1:123:35,88:35:1256:88:3144:-246.029,0,-76.3186	1/1:376:0,376:0:0:376:13382:-1203.39,-113.187,0	1/1:219:0,219:0:0:219:7803:-702.233,-65.9256,0
chr12	15794091	.	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chr12	16080829	.	ACT	TCT	105506	PASS	AB=0.485409;ABP=8.20638;AC=146;AF=0.784946;AN=186;AO=4980;CIGAR=1X2M;DP=6453;DPB=6453;DPRA=35.4341;EPP=10808.3;EPPR=3162.5;GTI=0;LEN=1;MEANALT=1.16484;MQM=59.9715;MQMR=59.9787;NS=93;NUMALT=1;ODDS=1.57102;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=177373;QR=51285;RO=1455;RPL=1;RPP=10808.3;RPPR=3162.5;RPR=4979;RUN=1;SAF=0;SAP=10816.9;SAR=4980;SRF=0;SRP=3162.5;SRR=1455;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:8,9:8:285:9:324:-24.3883,0,-20.8769	0/1:126:55,71:55:1933:71:2524:-189.478,0,-136.314	0/1:94:39,55:39:1370:55:1956:-148.019,0,-95.3001	1/1:95:0,95:0:0:95:3396:-305.855,-28.5979,0	0/1:38:18,20:18:642:20:694:-51.3408,0,-46.6711	0/1:37:23,14:23:805:14:500:-34.1981,0,-61.6306	1/1:86:0,86:0:0:86:3068:-276.35,-25.8886,0	0/1:85:38,47:38:1338:47:1671:-125.089,0,-95.1308	1/1:59:1,58:1:34:58:2076:-183.554,-14.3619,0	1/1:83:0,83:0:0:83:2976:-268.072,-24.9855,0	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	1/1:60:0,59:0:0:59:2112:-189.989,-17.7608,0	1/1:61:0,60:0:0:60:2132:-191.79,-18.0618,0	1/1:65:0,65:0:0:65:2307:-207.891,-19.567,0	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:52:0,52:0:0:52:1841:-165.968,-15.6536,0	1/1:43:0,43:0:0:43:1505:-135.742,-12.9443,0	1/1:24:0,24:0:0:24:851:-76.9095,-7.22472,0	0/1:120:59,60:59:2070:60:2122:-155.063,0,-150.388	0/1:48:29,19:29:1027:19:680:-47.0797,0,-78.2933	0/1:103:70,33:70:2491:33:1181:-75.5916,0,-193.437	1/1:56:0,56:0:0:56:1986:-179.011,-16.8577,0	1/1:92:5,87:5:180:87:3104:-263.036,-11.1427,0	1/1:37:0,33:0:0:33:1152:-103.628,-9.93399,0	0/1:251:141,109:141:4934:109:3887:-274.457,0,-368.651	1/1:107:0,107:0:0:107:3798:-341.863,-32.2102,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:180:90,90:90:3180:90:3186:-232.72,0,-232.24	0/1:131:61,70:61:2155:70:2504:-186.178,0,-154.782	1/1:131:0,131:0:0:131:4688:-422.079,-39.4349,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:10:8,2:8:286:2:72:-3.82642,0,-23.0752	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	.:.:.:.:.:.:.:.	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:178:93,84:93:3289:84:2999:-216.499,0,-242.59	0/1:105:54,51:54:1891:51:1805:-131.122,0,-138.728	1/1:37:0,36:0:0:36:1288:-115.951,-10.8371,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:123:0,122:0:0:122:4345:-390.866,-36.7257,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:86:0,86:0:0:86:3061:-275.718,-25.8886,0	1/1:71:0,71:0:0:71:2514:-226.51,-21.3731,0	0/1:51:26,25:26:905:25:900:-65.9685,0,-66.4104	0/1:78:43,35:43:1499:35:1256:-89.8649,0,-111.72	1/1:92:0,92:0:0:92:3288:-296.14,-27.6948,0	1/1:191:1,190:1:36:190:6782:-606.851,-53.9011,0	1/1:61:1,60:1:29:60:2148:-190.688,-15.4632,0	1/1:64:0,63:0:0:63:2241:-201.592,-18.9649,0	0/1:107:53,54:53:1849:54:1920:-140.865,0,-134.476	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:87:0,87:0:0:87:3046:-274.368,-26.1896,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891	1/1:68:0,68:0:0:68:2425:-218.504,-20.47,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	0/1:10:4,6:4:136:6:212:-16.4145,0,-9.56466	1/1:84:0,84:0:0:84:3004:-270.592,-25.2865,0	0/1:84:40,44:40:1416:44:1559:-115.314,0,-102.45	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:138:0,138:0:0:138:4933:-444.119,-41.5421,0	0/1:124:56,68:56:1987:68:2416:-180.369,0,-141.776	1/1:52:1,51:1:36:51:1809:-159.491,-12.0553,0	0/1:50:28,22:28:1004:22:782:-55.6511,0,-75.6246	0/1:105:44,60:44:1528:60:2112:-158.72,0,-106.18	0/1:44:25,19:25:880:19:684:-48.645,0,-66.2715	1/1:13:0,12:0:0:12:423:-38.0458,-3.61236,0	0/1:29:10,19:10:355:19:672:-52.077,0,-23.5608	0/1:70:32,36:32:1152:36:1287:-95.3031,0,-83.1603	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	0/1:96:53,43:53:1852:43:1536:-109.634,0,-138.057	0/1:48:38,10:38:1339:10:341:-16.5683,0,-106.361	0/1:132:61,71:61:2150:71:2532:-188.206,0,-154.03	1/1:115:0,115:0:0:115:4085:-367.835,-34.6185,0	0/1:46:18,28:18:648:28:1008:-77.189,0,-44.8045	0/1:73:44,29:44:1555:29:1032:-71.2183,0,-118.265	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:99:0,99:0:0:99:3544:-319.169,-29.802,0	1/1:73:0,73:0:0:73:2601:-234.337,-21.9752,0	1/1:163:1,162:1:36:162:5784:-517.078,-45.4696,0	1/1:86:0,86:0:0:86:3046:-274.371,-25.8886,0	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:75:0,75:0:0:75:2692:-242.524,-22.5773,0	1/1:138:0,138:0:0:138:4940:-444.745,-41.5421,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:66:1,65:1:36:65:2332:-206.541,-16.2697,0	1/1:66:0,65:0:0:65:2308:-207.7,-19.567,0	1/1:27:0,26:0:0:26:936:-84.2765,-7.82678,0	0/1:63:31,32:31:1099:32:1123:-82.4105,0,-80.2551	0/1:65:42,23:42:1490:23:824:-54.9164,0,-114.828	1/1:71:0,71:0:0:71:2499:-225.161,-21.3731,0	1/1:80:0,80:0:0:80:2843:-256.109,-24.0824,0
chr12	16080833	.	C	A	24124	PASS	AB=0.505642;ABP=3.79436;AC=39;AF=0.209677;AN=186;AO=1446;CIGAR=1X;DP=6487;DPB=6487;DPRA=1.30626;EPP=3142.96;EPPR=10932;GTI=1;LEN=1;MEANALT=1.04444;MQM=59.9772;MQMR=59.9754;NS=93;NUMALT=1;ODDS=1.59336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51653;QR=179717;RO=5037;RPL=0;RPP=3142.96;RPPR=10932;RPR=1446;RUN=1;SAF=0;SAP=3142.96;SAR=1446;SRF=0;SRP=10940.7;SRR=5037;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:17:9,8:9:324:8:280:-20.4218,0,-24.3883	0/1:129:74,55:74:2647:55:1972:-138.922,0,-199.638	0/1:96:57,39:57:2027:39:1392:-96.6801,0,-153.803	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/1:37:17,19:17:608:19:668:-49.2485,0,-43.8552	0/1:36:14,22:14:504:22:780:-59.686,0,-34.861	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.034	0/1:86:48,38:48:1720:38:1364:-97.1721,0,-129.197	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.798	0/0:87:87,0:87:3104:0:0:0,-26.1896,-279.588	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:62:62,0:62:2197:0:0:0,-18.6639,-197.986	0/0:63:63,0:63:2243:0:0:0,-18.9649,-202.133	0/0:52:52,0:52:1833:0:0:0,-15.6536,-165.248	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:52:52,0:52:1832:0:0:0,-15.6536,-165.15	0/0:42:42,0:42:1476:0:0:0,-12.6433,-133.131	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/1:120:62,58:62:2201:58:2075:-150.896,0,-162.23	0/1:49:20,29:20:720:29:1013:-76.7289,0,-50.3783	0/1:104:33,71:33:1184:71:2536:-197.183,0,-75.5612	0/0:56:56,0:56:1989:0:0:0,-16.8577,-179.282	0/0:92:87,5:87:3109:5:180:0,-11.1427,-263.483	0/0:37:37,0:37:1309:0:0:0,-11.1381,-118.11	0/1:252:114,138:114:4058:138:4947:-369.519,0,-289.549	0/0:104:103,0:103:3673:0:0:0,-31.0061,-330.413	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/1:181:92,89:92:3308:89:3192:-233.017,0,-243.394	0/1:134:73,61:73:2604:61:2183:-156.397,0,-194.271	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.797	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:10:2,8:2:72:8:280:-22.529,0,-3.82642	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	.:.:.:.:.:.:.:.	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:177:86,91:86:3084:91:3255:-239.888,0,-224.505	0/1:105:52,53:52:1860:53:1895:-139.182,0,-136.071	0/0:36:36,0:36:1283:0:0:0,-10.8371,-115.773	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:123:123,0:123:4365:0:0:0,-37.0267,-393.024	0/0:29:29,0:29:1005:0:0:0,-8.72987,-90.7583	0/0:87:87,0:87:3083:0:0:0,-26.1896,-277.697	0/0:70:70,0:70:2491:0:0:0,-21.0721,-224.438	0/1:52:26,26:26:917:26:917:-67.191,0,-67.191	0/1:79:36,43:36:1296:43:1532:-114.392,0,-93.1626	0/0:94:94,0:94:3355:0:0:0,-28.2968,-302.167	0/0:188:187,1:187:6675:1:31:0,-53.495,-597.723	0/0:61:60,1:60:2144:1:32:0,-15.1635,-190.028	0/0:64:64,0:64:2280:0:0:0,-19.2659,-205.462	0/1:110:57,53:57:2029:53:1896:-137.805,0,-149.766	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:91:91,0:91:3248:0:0:0,-27.3937,-292.542	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:43:43,0:43:1529:0:0:0,-12.9443,-137.901	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:10:6,4:6:216:4:136:-9.56524,0,-16.7802	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/1:86:46,40:46:1643:40:1423:-102.478,0,-122.269	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:143:143,0:143:5116:0:0:0,-43.0473,-460.565	0/1:127:71,56:71:2543:56:1992:-141.321,0,-190.889	0/0:51:50,1:50:1775:1:36:0,-11.7543,-156.434	0/1:50:21,28:21:756:28:1008:-75.9839,0,-53.3141	0/1:102:60,42:60:2147:42:1503:-104.859,0,-162.792	0/1:45:20,25:20:720:25:896:-67.414,0,-51.5824	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/1:30:20,10:20:705:10:360:-23.7134,0,-54.7419	0/1:70:38,32:38:1368:32:1148:-82.5577,0,-102.349	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:97:45,52:45:1596:52:1860:-138.48,0,-114.73	0/1:47:9,38:9:324:38:1355:-108.101,0,-15.3574	0/1:135:74,61:74:2640:61:2174:-155.286,0,-197.018	0/0:114:113,1:113:4060:1:36:0,-30.7191,-361.987	0/1:46:28,18:28:1008:18:648:-44.8045,0,-77.189	0/1:74:30,44:30:1065:44:1580:-120.213,0,-73.8835	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:103:103,0:103:3687:0:0:0,-31.0061,-332.032	0/0:72:72,0:72:2564:0:0:0,-21.6742,-231.011	0/0:160:159,1:159:5658:1:36:0,-44.5665,-505.739	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.471	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.224	0/0:74:74,0:74:2637:0:0:0,-22.2762,-237.576	0/0:139:138,0:138:4927:0:0:0,-41.5421,-443.22	0/0:38:38,0:38:1345:0:0:0,-11.4391,-121.348	0/0:68:67,1:67:2400:1:36:0,-16.8718,-212.659	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/1:63:31,32:31:1107:32:1142:-84.124,0,-80.9753	0/1:64:22,42:22:780:42:1504:-116.389,0,-51.2571	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/0:81:81,0:81:2882:0:0:0,-24.3834,-259.616
chr12	16111600	.	G	A	297935	PASS	AB=0.501635;ABP=3.1452;AC=147;AF=0.781915;AN=188;AO=10914;CIGAR=1X;DP=13838;DPB=13838;DPRA=29.7484;EPP=23685.1;EPPR=6324.18;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9674;MQMR=59.9746;NS=94;NUMALT=1;ODDS=1.10819;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=388518;QR=102661;RO=2919;RPL=5022;RPP=153.605;RPPR=17.8;RPR=5892;RUN=1;SAF=5020;SAP=154.993;SAR=5894;SRF=1387;SRP=18.651;SRR=1532;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:90:52,38:52:1834:38:1338:-93.6258,0,-138.246	0/1:186:91,95:91:3200:95:3361:-246.714,0,-232.231	0/1:207:97,110:97:3443:110:3910:-289.776,0,-247.768	1/1:297:2,295:2:72:295:10561:-943.566,-82.5692,0	0/1:119:67,52:67:2336:52:1864:-132.214,0,-174.675	0/1:86:38,48:38:1325:48:1695:-126.947,0,-93.6588	1/1:136:0,136:0:0:136:4840:-435.752,-40.9401,0	0/1:248:110,137:110:3851:137:4868:-363.699,0,-272.21	1/1:211:0,211:0:0:211:7523:-677.112,-63.5173,0	1/1:155:0,155:0:0:155:5536:-498.352,-46.6597,0	1/1:96:0,96:0:0:96:3425:-308.463,-28.8989,0	1/1:178:1,177:1:36:177:6286:-562.239,-49.9851,0	1/1:147:0,147:0:0:147:5217:-469.667,-44.2514,0	1/1:129:0,129:0:0:129:4599:-414.074,-38.8329,0	1/1:171:0,170:0:0:170:6053:-544.598,-51.1751,0	1/1:104:1,103:1:32:103:3670:-327.304,-28.1078,0	1/1:118:0,118:0:0:118:4190:-377.284,-35.5215,0	1/1:93:0,93:0:0:93:3296:-296.859,-27.9958,0	1/1:89:0,89:0:0:89:3175:-285.974,-26.7917,0	0/1:227:83,144:83:2925:144:5108:-391.529,0,-195.149	0/1:273:131,142:131:4641:142:5029:-370.578,0,-335.675	0/1:108:84,24:84:2976:24:851:-44.3972,0,-235.549	1/1:157:0,157:0:0:157:5590:-503.222,-47.2617,0	1/1:66:2,64:2:68:64:2288:-199.724,-13.4103,0	1/1:132:0,132:0:0:132:4693:-422.529,-39.736,0	0/1:415:196,218:196:6904:218:7736:-571.29,0,-496.447	1/1:368:2,365:2:72:365:13043:-1166.84,-104.001,0	1/1:92:0,92:0:0:92:3257:-293.352,-27.6948,0	0/1:310:147,163:147:5205:163:5804:-429.155,0,-375.269	0/1:136:63,73:63:2229:73:2578:-191.327,0,-159.933	1/1:198:4,194:4:135:194:6923:-610.656,-47.1214,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:5:3,2:3:100:2:72:-5.33157,0,-7.82529	0/1:434:231,203:231:8106:203:7244:-520.969,0,-598.921	0/1:112:47,65:47:1649:65:2322:-175.525,0,-114.98	1/1:122:0,122:0:0:122:4346:-391.316,-36.7257,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	1/1:179:0,179:0:0:179:6416:-577.527,-53.8844,0	1/1:69:0,69:0:0:69:2463:-221.924,-20.7711,0	1/1:191:0,191:0:0:191:6753:-607.843,-57.4967,0	1/1:163:0,163:0:0:163:5806:-522.656,-49.0679,0	0/1:151:68,83:68:2397:83:2939:-219.29,0,-170.531	0/1:148:78,70:78:2788:70:2512:-181.779,0,-206.608	1/1:154:1,153:1:36:153:5425:-484.783,-42.7603,0	1/1:230:0,230:0:0:230:8187:-736.843,-69.2369,0	1/1:150:0,150:0:0:150:5350:-481.546,-45.1545,0	1/1:201:0,201:0:0:201:7150:-643.559,-60.507,0	0/1:144:66,78:66:2359:78:2781:-207.181,0,-169.22	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:187:0,187:0:0:187:6698:-602.894,-56.2926,0	1/1:60:0,60:0:0:60:2130:-191.963,-18.0618,0	0/1:12:2,10:2:63:10:360:-29.1319,0,-2.37079	1/1:253:0,253:0:0:253:9016:-811.415,-76.1606,0	1/1:72:1,71:1:36:71:2530:-224.352,-18.0759,0	0/1:16:3,13:3:108:13:464:-37.281,0,-5.25869	0/1:20:12,8:12:428:8:288:-20.2468,0,-32.8382	1/1:166:0,166:0:0:166:5932:-533.983,-49.971,0	0/1:147:64,83:64:2242:83:2950:-221.482,0,-157.79	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:189:0,189:0:0:189:6701:-602.939,-56.8947,0	0/1:291:165,126:165:5832:126:4485:-316.218,0,-437.397	1/1:123:4,119:4:144:119:4211:-365.859,-23.7131,0	0/1:124:60,64:60:2100:64:2280:-168.135,0,-151.937	0/1:200:95,105:95:3341:105:3739:-276.506,0,-240.702	0/1:171:96,74:96:3384:74:2650:-187.231,0,-253.262	1/1:72:0,72:0:0:72:2540:-228.851,-21.6742,0	0/1:102:48,54:48:1694:54:1936:-143.811,0,-122.04	0/1:122:59,63:59:2074:63:2246:-165.677,0,-150.204	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	0/1:100:43,57:43:1515:57:2001:-150.257,0,-106.539	0/1:146:72,74:72:2532:74:2620:-192.096,0,-184.181	0/1:258:123,135:123:4293:135:4798:-354.31,0,-308.883	1/1:148:0,148:0:0:148:5303:-477.403,-44.5524,0	0/1:191:125,66:125:4349:66:2339:-153.27,0,-334.092	0/1:151:71,80:71:2504:80:2866:-212.722,0,-180.049	0/1:17:11,6:11:383:6:212:-14.3073,0,-29.6857	1/1:116:1,115:1:32:115:4124:-368.144,-31.7202,0	1/1:215:1,214:1:32:214:7575:-678.596,-61.5221,0	1/1:316:0,316:0:0:316:11277:-1014.81,-95.1255,0	1/1:172:0,172:0:0:172:6073:-546.68,-51.7772,0	1/1:106:0,106:0:0:106:3786:-340.938,-31.9092,0	1/1:163:0,163:0:0:163:5815:-523.466,-49.0679,0	1/1:320:0,320:0:0:320:11348:-1020.29,-96.3296,0	1/1:60:0,60:0:0:60:2131:-192.057,-18.0618,0	1/1:169:0,169:0:0:169:5992:-539.39,-50.8741,0	1/1:145:0,145:0:0:145:5162:-464.533,-43.6494,0	1/1:78:1,77:1:21:77:2733:-244.112,-21.3804,0	0/1:143:64,79:64:2165:79:2819:-210.902,0,-152.063	0/1:167:110,57:110:3846:57:2040:-133.6,0,-296.064	1/1:146:0,146:0:0:146:5218:-469.757,-43.9504,0	1/1:291:0,291:0:0:291:10381:-934.213,-87.5997,0
chr12	16112664	.	A	G	125755	PASS	AB=0.463341;ABP=41.8567;AC=146;AF=0.776596;AN=188;AO=5793;CIGAR=1X;DP=7607;DPB=7607;DPRA=27.2545;EPP=11922.4;EPPR=3589.28;GTI=4;LEN=1;MEANALT=1.06452;MQM=59.9936;MQMR=60;NS=94;NUMALT=1;ODDS=0.974526;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=205979;QR=64469;RO=1808;RPL=5717;RPP=11930.9;RPPR=3589.28;RPR=76;RUN=1;SAF=5792;SAP=12573.7;SAR=1;SRF=1808;SRP=3929.03;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:11,1:11:396:1:36:0,-0.0140849,-32.3845	0/1:137:67,69:67:2385:69:2468:-181.074,0,-173.606	0/1:80:55,25:55:1957:25:896:-56.878,0,-152.321	1/1:185:0,184:0:0:184:6486:-583.47,-55.3895,0	0/1:51:30,21:30:1076:21:752:-52.6537,0,-81.8003	0/1:70:42,28:42:1496:28:1008:-69.9643,0,-113.862	1/1:58:1,57:1:36:57:2029:-179.282,-13.8615,0	0/1:129:68,61:68:2444:61:2183:-157.903,0,-181.382	1/1:87:0,87:0:0:87:3081:-277.493,-26.1896,0	1/1:73:0,73:0:0:73:2597:-233.976,-21.9752,0	1/1:49:0,49:0:0:49:1726:-155.623,-14.7505,0	1/1:80:0,80:0:0:80:2827:-254.668,-24.0824,0	1/1:45:0,45:0:0:45:1580:-142.488,-13.5464,0	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	1/1:53:0,53:0:0:53:1861:-167.765,-15.9546,0	1/1:60:0,60:0:0:60:2124:-191.426,-18.0618,0	1/1:62:1,61:1:36:61:2171:-192.058,-15.0656,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:167:94,73:94:3337:73:2597:-183.705,0,-250.276	0/1:149:77,72:77:2738:72:2576:-187.236,0,-201.806	0/1:84:55,29:55:1953:29:1024:-67.1852,0,-150.757	1/1:64:0,64:0:0:64:2287:-206.091,-19.2659,0	1/1:135:1,134:1:36:134:4782:-426.939,-37.0408,0	1/1:66:0,66:0:0:66:2352:-211.939,-19.868,0	0/1:347:175,172:175:6253:172:6131:-447.434,0,-458.407	1/1:219:0,219:0:0:219:7784:-700.592,-65.9256,0	1/1:56:0,56:0:0:56:1985:-178.923,-16.8577,0	0/1:229:127,102:127:4488:102:3640:-258.867,0,-335.152	0/1:77:39,38:39:1396:38:1345:-98.1688,0,-102.76	1/1:109:3,106:3:108:106:3776:-329.963,-22.7371,0	0/1:5:4,1:4:140:1:32:-1.69416,0,-11.4394	0/1:9:7,2:7:237:2:68:-3.74844,0,-18.9498	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:187:110,77:110:3902:77:2723:-189.02,0,-295.081	0/1:92:32,59:32:1148:59:2101:-161.604,0,-75.8763	1/1:77:0,77:0:0:77:2714:-244.502,-23.1793,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	1/1:86:0,86:0:0:86:3086:-277.968,-25.8886,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:114:0,114:0:0:114:4052:-364.868,-34.3174,0	1/1:95:0,95:0:0:95:3369:-303.427,-28.5979,0	0/1:73:40,33:40:1432:33:1127:-79.7542,0,-107.202	0/1:77:44,33:44:1572:33:1175:-82.8776,0,-118.592	1/1:98:0,98:0:0:98:3484:-313.769,-29.5009,0	1/1:108:0,108:0:0:108:3821:-344.086,-32.5112,0	1/1:104:0,104:0:0:104:3726:-335.54,-31.3071,0	1/1:106:0,106:0:0:106:3789:-341.207,-31.9092,0	0/1:147:85,62:85:3052:62:2194:-153.473,0,-230.657	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:113:0,113:0:0:113:4043:-364.057,-34.0164,0	1/1:11:0,11:0:0:11:381:-34.6206,-3.31133,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:123:1,122:1:36:122:4351:-388.168,-33.4284,0	1/1:17:0,17:0:0:17:597:-54.0561,-5.11751,0	0/1:18:12,6:12:428:6:212:-14.0063,0,-33.4403	0/1:24:6,18:6:212:18:648:-51.4272,0,-12.2001	1/1:54:0,54:0:0:54:1929:-173.886,-16.2556,0	0/1:84:48,36:48:1716:36:1273:-89.5844,0,-129.439	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:144:0,144:0:0:144:5139:-462.653,-43.3483,0	0/1:138:89,49:89:3165:49:1764:-117.502,0,-243.532	1/1:73:1,72:1:36:72:2583:-229.12,-18.3769,0	0/1:59:23,36:23:828:36:1249:-94.9469,0,-57.0833	0/1:139:65,74:65:2328:74:2649:-196.811,0,-167.937	0/1:97:53,44:53:1904:44:1576:-112.932,0,-142.438	1/1:24:0,24:0:0:24:838:-75.7363,-7.22472,0	0/1:65:39,26:39:1373:26:928:-64.2713,0,-104.3	0/1:73:32,41:32:1144:41:1437:-107.646,0,-81.2943	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:65:40,25:40:1432:25:877:-59.6783,0,-109.611	0/1:23:10,12:10:352:12:432:-32.2755,0,-25.0727	0/1:105:42,63:42:1508:63:2218:-168.274,0,-104.406	1/1:143:0,142:0:0:142:5092:-458.212,-42.7463,0	0/1:48:30,18:30:1068:18:620:-41.6707,0,-81.9826	0/1:102:54,48:54:1925:48:1707:-123.21,0,-142.82	0/1:18:2,16:2:72:16:572:-46.3949,0,-1.41818	1/1:112:1,110:1:36:110:3909:-348.423,-30.1559,0	1/1:60:0,60:0:0:60:2107:-189.896,-18.0618,0	1/1:141:0,141:0:0:141:5010:-451.048,-42.4452,0	1/1:80:0,80:0:0:80:2858:-257.457,-24.0824,0	1/1:57:0,57:0:0:57:2029:-182.881,-17.1587,0	1/1:91:0,91:0:0:91:3235:-291.373,-27.3937,0	1/1:179:0,179:0:0:179:6387:-574.92,-53.8844,0	1/1:49:0,49:0:0:49:1750:-157.784,-14.7505,0	1/1:98:1,97:1:36:97:3445:-306.665,-25.9027,0	1/1:63:0,63:0:0:63:2229:-200.872,-18.9649,0	1/1:33:0,33:0:0:33:1176:-106.148,-9.93399,0	0/1:77:38,39:38:1356:39:1368:-100.236,0,-99.1612	0/1:72:43,29:43:1544:29:1021:-70.5261,0,-117.579	1/1:105:0,105:0:0:105:3728:-335.721,-31.6082,0	1/1:104:1,103:1:32:103:3668:-327.123,-28.1078,0
chr12	16244206	.	A	T	10524.2	PASS	AB=0.524876;ABP=9.49231;AC=40;AF=0.212766;AN=188;AO=648;CIGAR=1X;DP=2578;DPB=2578;DPRA=1.30052;EPP=1410.12;EPPR=4193.95;GTI=1;LEN=1;MEANALT=1;MQM=59.9954;MQMR=59.986;NS=94;NUMALT=1;ODDS=0.965216;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23182;QR=69075;RO=1930;RPL=0;RPP=1410.12;RPPR=4193.95;RPR=648;RUN=1;SAF=648;SAP=1410.12;SAR=0;SRF=1930;SRP=4193.95;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:34:19,15:19:680:15:536:-38.3398,0,-51.2941	0/1:35:19,16:19:684:16:572:-41.2774,0,-51.3543	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0171	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:33:9,24:9:324:24:860:-67.7878,0,-19.5719	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:39:38,1:38:1368:1:36:0,-8.14189,-119.823	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:30:29,1:29:1040:1:36:0,-5.43262,-90.3161	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:23:23,0:23:794:0:0:0,-6.92369,-71.7733	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:58:32,26:32:1152:26:932:-66.7391,0,-86.5304	0/1:36:14,22:14:504:22:788:-60.4077,0,-34.861	0/1:17:6,11:6:216:11:392:-30.5025,0,-14.673	0/0:26:24,2:24:860:2:72:0,-0.990057,-70.8851	0/0:26:24,2:24:864:2:72:0,-0.990057,-71.2458	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:102:38,64:38:1360:64:2288:-175.477,0,-91.9955	0/0:57:57,0:57:2029:0:0:0,-17.1587,-182.881	0/0:10:10,0:10:345:0:0:0,-3.0103,-31.3808	0/1:36:20,16:20:720:16:576:-41.3379,0,-54.2917	0/1:48:24,24:24:864:24:860:-63.2724,0,-63.6331	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:13:11,2:11:396:2:72:-2.92333,0,-32.0694	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:71:34,37:34:1220:37:1328:-98.4491,0,-88.7337	0/1:56:31,25:31:1101:25:896:-64.1011,0,-82.5407	0/0:28:26,2:26:936:2:68:0,-1.97113,-78.1018	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:41:40,1:40:1420:1:32:0,-9.14292,-124.841	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:25:15,10:15:540:10:352:-24.4924,0,-41.4108	0/1:25:8,17:8:288:17:612:-47.8877,0,-18.7417	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:31:30,1:30:1076:1:36:0,-5.73365,-93.5546	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:32:17,15:17:612:15:540:-39.3036,0,-45.7805	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:46:46,0:46:1633:0:0:0,-13.8474,-147.257	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:6:4,2:4:114:2:72:-5.03054,0,-8.73553	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:16:16,0:16:542:0:0:0,-4.81648,-49.0977	0/1:51:31,20:31:1112:20:716:-49.4152,0,-85.0388	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:64:28,36:28:993:36:1288:-96.9577,0,-70.4166	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:3:1,2:1:36:2:57:-4.51022,0,-2.69518	0/1:60:20,40:20:716:40:1409:-109.043,0,-46.7059	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:49:25,24:25:896:24:864:-63.3321,0,-66.2099	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:57:27,30:27:964:30:1076:-79.9941,0,-69.9181	0/1:21:5,16:5:180:16:576:-45.8534,0,-10.2304	0/1:60:34,26:34:1224:26:932:-66.1371,0,-92.4052	0/0:33:33,0:33:1158:0:0:0,-9.93399,-104.523	0/1:8:3,5:3:93:5:180:-14.1438,0,-6.26849	0/1:16:7,9:7:252:9:320:-24.3259,0,-18.2125	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:32:30,2:30:1065:2:72:0,-2.79624,-89.323	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:17:16,1:16:572:1:36:0,-1.51923,-48.2152	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4057	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:34:33,1:33:1184:1:36:0,-6.63674,-103.27	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:64:35,29:35:1260:29:1044:-75.0089,0,-94.4396	0/1:26:5,21:5:180:21:752:-60.1795,0,-8.72528	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132
chr12	16380074	.	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chr12	16380216	.	T	C	28612.9	PASS	AB=0.514363;ABP=8.93638;AC=42;AF=0.223404;AN=188;AO=1716;CIGAR=1X;DP=6979;DPB=6979;DPRA=1.19663;EPP=3729.26;EPPR=11366.4;GTI=1;LEN=1;MEANALT=1.09302;MQM=59.9545;MQMR=59.9903;NS=94;NUMALT=1;ODDS=0.727064;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60974;QR=188244;RO=5257;RPL=1716;RPP=3729.26;RPPR=11366.4;RPR=0;RUN=1;SAF=0;SAP=3729.26;SAR=1716;SRF=0;SRP=11418.4;SRR=5257;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:47:26,21:26:936:21:741:-52.8632,0,-70.4111	0/1:40:18,22:18:614:22:792:-59.5645,0,-43.5358	0/1:129:58,71:58:2088:71:2494:-185.876,0,-149.357	0/0:160:160,0:160:5744:0:0:0,-48.1648,-517.074	0/1:61:32,29:32:1152:29:995:-71.4905,0,-85.6273	0/1:53:21,32:21:756:32:1152:-88.0218,0,-52.4126	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:136:63,73:63:2253:73:2564:-190.065,0,-162.091	0/0:100:100,0:100:3573:0:0:0,-30.103,-321.776	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.51	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:89:89,0:89:3158:0:0:0,-26.7917,-284.443	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3496	0/1:132:69,63:69:2480:63:2226:-160.865,0,-183.717	0/1:137:51,85:51:1836:85:3006:-229.47,0,-124.221	0/1:111:37,71:37:1328:71:2548:-196.747,0,-86.9974	0/0:106:106,0:106:3770:0:0:0,-31.9092,-339.498	0/0:36:34,2:34:1209:2:72:0,-4.00036,-102.277	0/0:69:69,0:69:2450:0:0:0,-20.7711,-220.752	0/1:231:112,119:112:4002:119:4260:-314.041,0,-290.828	0/0:175:175,0:175:6262:0:0:0,-52.6802,-563.671	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:172:88,84:88:3133:84:2990:-217.552,0,-230.418	0/1:107:59,48:59:2124:48:1709:-121.884,0,-159.218	0/0:120:117,3:117:4208:3:108:0,-26.0484,-368.824	0/1:10:5,5:5:165:5:180:-13.5418,0,-12.1633	0/1:7:3,4:3:108:4:144:-11.1489,0,-7.96796	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:178:84,94:84:3024:94:3350:-248.131,0,-218.806	0/1:101:59,42:59:2109:42:1497:-104.611,0,-159.673	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:122:122,0:122:4369:0:0:0,-36.7257,-393.382	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:178:178,0:178:6377:0:0:0,-53.5833,-574.017	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:57:29,27:29:1040:27:972:-70.5804,0,-76.6969	0/1:105:57,48:57:2022:48:1679:-119.782,0,-150.641	0/0:113:113,0:113:4041:0:0:0,-34.0164,-363.876	0/0:106:106,0:106:3767:0:0:0,-31.9092,-339.226	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/0:90:90,0:90:3221:0:0:0,-27.0927,-290.11	0/1:103:49,54:49:1760:54:1917:-141.799,0,-127.678	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:106:106,0:106:3816:0:0:0,-31.9092,-343.635	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/0:114:114,0:114:4104:0:0:0,-34.3174,-369.543	0/0:48:48,0:48:1698:0:0:0,-14.4494,-153.102	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:18:12,6:12:428:6:216:-14.372,0,-33.4403	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:105:55,50:55:1980:50:1785:-129.323,0,-146.866	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:100:100,0:100:3581:0:0:0,-30.103,-322.495	0/1:106:54,52:54:1925:52:1864:-136.13,0,-141.616	0/0:34:32,2:32:1152:2:72:0,-3.3983,-97.1534	0/1:51:26,25:26:932:25:900:-65.9685,0,-68.8463	0/1:130:73,57:73:2628:57:2025:-143.387,0,-197.631	0/1:120:39,81:39:1404:81:2893:-224.481,0,-90.5357	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:56:32,24:32:1148:24:860:-60.8642,0,-86.7722	0/1:29:15,14:15:525:14:504:-36.9682,0,-38.8482	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:132:54,78:54:1906:78:2785:-211.136,0,-132.078	0/1:49:27,22:27:972:22:765:-54.4117,0,-73.0474	0/1:224:122,102:122:4342:102:3592:-256.053,0,-323.523	0/0:140:140,0:140:5025:0:0:0,-42.1442,-452.393	0/1:162:82,80:82:2944:80:2857:-208.599,0,-216.427	0/1:60:20,40:20:716:40:1391:-107.419,0,-46.7059	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:77:77,0:77:2753:0:0:0,-23.1793,-248.01	0/0:168:168,0:168:6021:0:0:0,-50.573,-541.992	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:110:109,0:109:3920:0:0:0,-32.8123,-352.68	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:67:40,27:40:1440:27:957:-66.2749,0,-109.729	0/1:62:18,44:18:648:44:1576:-123.468,0,-39.988	0/0:104:104,0:104:3694:0:0:0,-31.3071,-332.661	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.959
chr12	16380900	.	GTAG	ATAG,ATAT	82075.4	PASS	AB=0.595703,0.404297;ABP=125.207,125.207;AC=148,36;AF=0.804348,0.195652;AN=184;AO=3527,626;CIGAR=1X3M,1X2M1X;DP=4159;DPB=4159;DPRA=0,1.09129;EPP=7618.43,1362.35;EPPR=11.6962;GTI=7;LEN=1,4;MEANALT=1.45652,2;MQM=40.55,28.4521;MQMR=57;NS=92;NUMALT=2;ODDS=1.03962;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=125920,22225;QR=137;RO=4;RPL=5,0;RPP=7618.43,1362.35;RPPR=11.6962;RPR=3522,626;RUN=1,1;SAF=0,0;SAP=7661.79,1362.35;SAR=3527,626;SRF=0;SRP=11.6962;SRR=4;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:14:0,12,2:0:0:12,2:432,71:-38.6482,-4.58238,-0.970022,-34.3495,0,-33.7474	1/2:39:0,24,15:0:0:24,15:864,528:-100.421,-32.3095,-25.0848,-68.4127,0,-63.8972	1/2:32:0,22,10:0:0:22,10:788,344:-83.2052,-21.1533,-14.5306,-62.3427,0,-59.3324	1/1:104:0,104,0:0:0:104,0:3720,0:-318.651,-31.3071,0,-318.651,-31.3071,-318.651	1/2:12:0,5,7:0:0:5,7:180,249:-30.7719,-16.4063,-14.9012,-14.6915,0,-12.5843	1/2:5:0,2,3:0:0:2,3:72,107:-12.4374,-6.74419,-6.14213,-6.01126,0,-5.10817	1/1:11:0,11,0:0:0:11,0:387,0:-33.5541,-3.31133,0,-33.5541,-3.31133,-33.5541	1/2:54:0,37,17:0:0:37,17:1300,606:-139.212,-37.4108,-26.2727,-102.097,0,-96.9797	1/1:47:0,47,0:0:0:47,0:1674,0:-145.303,-14.1484,0,-145.303,-14.1484,-145.303	1/1:46:0,46,0:0:0:46,0:1633,0:-140.07,-13.8474,0,-140.07,-13.8474,-140.07	1/1:16:0,16,0:0:0:16,0:576,0:-49.8188,-4.81648,0,-49.8188,-4.81648,-49.8188	1/1:61:0,61,0:0:0:61,0:2179,0:-189.06,-18.3628,0,-189.06,-18.3628,-189.06	1/1:60:0,60,0:0:0:60,0:2143,0:-186.358,-18.0618,0,-186.358,-18.0618,-186.358	1/1:26:0,26,0:0:0:26,0:936,0:-82.7073,-7.82678,0,-82.7073,-7.82678,-82.7073	1/1:36:0,36,0:0:0:36,0:1292,0:-110.994,-10.8371,0,-110.994,-10.8371,-110.994	1/1:38:1,37,0:1:35:37,0:1332,0:-114.171,-7.94131,0,-114.472,-11.1381,-117.319	1/1:19:0,19,0:0:0:19,0:684,0:-59.868,-5.71957,0,-59.868,-5.71957,-59.868	1/1:15:0,15,0:0:0:15,0:535,0:-46.7809,-4.51545,0,-46.7809,-4.51545,-46.7809	1/1:17:0,17,0:0:0:17,0:599,0:-52.1576,-5.11751,0,-52.1576,-5.11751,-52.1576	1/2:65:0,43,22:0:0:43,22:1540,783:-165.475,-46.3503,-33.406,-119.416,0,-112.793	1/2:68:0,34,34:0:0:34,34:1211,1197:-173.896,-77.8235,-67.5884,-96.3899,0,-86.1549	1/2:37:0,13,24:0:0:13,24:455,857:-85.1416,-50.1691,-46.2557,-35.2808,0,-28.0561	1/1:70:0,70,0:0:0:70,0:2492,0:-214.212,-21.0721,0,-214.212,-21.0721,-214.212	1/1:13:0,13,0:0:0:13,0:464,0:-41.2965,-3.91339,0,-41.2965,-3.91339,-41.2965	1/1:64:0,64,0:0:0:64,0:2294,0:-202.047,-19.2659,0,-202.047,-19.2659,-202.047	1/2:108:0,59,49:0:0:59,49:2116,1756:-267.392,-103.495,-85.7339,-164.198,0,-149.448	1/1:117:0,117,0:0:0:117,0:4190,0:-369.106,-35.2205,0,-369.106,-35.2205,-369.106	1/1:33:0,32,0:0:0:32,0:1135,0:-99.914,-9.63296,0,-99.914,-9.63296,-99.914	1/2:104:0,55,49:0:0:55,49:1950,1735:-254.681,-104.018,-87.4611,-150.964,0,-136.214	1/2:36:0,22,14:0:0:22,14:788,504:-95.4256,-32.6507,-26.028,-63.0886,0,-58.8741	1/1:78:0,78,0:0:0:78,0:2783,0:-239.196,-23.4803,0,-239.196,-23.4803,-239.196	1/2:14:0,8,6:0:0:8,6:288,210:-37.0228,-13.9724,-11.5642,-23.3656,0,-21.5594	1/2:3:0,1,2:0:0:1,2:36,66:-7.57405,-4.71979,-4.41876,-3.17967,0,-2.57761	1/1:4:0,4,0:0:0:4,0:144,0:-12.8786,-1.20412,0,-12.8786,-1.20412,-12.8786	1/2:6:0,5,1:0:0:5,1:176,36:-16.3507,-2.43517,-0.930022,-14.2005,0,-13.8994	1/2:17:0,14,3:0:0:14,3:504,108:-46.4619,-6.75828,-2.54386,-39.9904,0,-39.0873	1/2:115:0,58,57:0:0:58,57:2082,2031:-281.279,-119.949,-102.49,-161.634,0,-144.475	1/2:54:0,38,16:0:0:38,16:1360,570:-145.145,-37.0786,-25.6395,-108.373,0,-103.556	1/1:27:0,27,0:0:0:27,0:959,0:-83.6965,-8.12781,0,-83.6965,-8.12781,-83.6965	.:.:.:.:.:.:.:.	1/1:38:0,38,0:0:0:38,0:1358,0:-119.516,-11.4391,0,-119.516,-11.4391,-119.516	1/1:20:0,20,0:0:0:20,0:712,0:-62.6834,-6.0206,0,-62.6834,-6.0206,-62.6834	1/1:71:0,71,0:0:0:71,0:2547,0:-224.08,-21.3731,0,-224.08,-21.3731,-224.08	1/1:58:0,58,0:0:0:58,0:2064,0:-177.236,-17.4597,0,-177.236,-17.4597,-177.236	1/2:18:0,8,10:0:0:8,10:279,359:-42.4294,-21.0807,-18.6725,-21.6495,0,-18.6392	1/2:47:0,34,13:0:0:34,13:1200,462:-119.875,-27.3278,-17.0928,-92.8313,0,-88.9179	1/1:58:0,58,0:0:0:58,0:2076,0:-180.51,-17.4597,0,-180.51,-17.4597,-180.51	1/1:98:0,98,0:0:0:98,0:3493,0:-300.879,-29.5009,0,-300.879,-29.5009,-300.879	1/1:65:0,65,0:0:0:65,0:2312,0:-198.735,-19.567,0,-198.735,-19.567,-198.735	1/1:80:0,80,0:0:0:80,0:2846,0:-244.548,-24.0824,0,-244.548,-24.0824,-244.548	1/2:24:0,18,6:0:0:18,6:648,204:-62.5259,-12.4193,-7.00077,-50.3862,0,-48.58	1/1:9:0,9,0:0:0:9,0:320,0:-28.0524,-2.70927,0,-28.0524,-2.70927,-28.0524	1/1:43:0,43,0:0:0:43,0:1536,0:-133.782,-12.9443,0,-133.782,-12.9443,-133.782	1/1:27:0,27,0:0:0:27,0:972,0:-83.5359,-8.12781,0,-83.5359,-8.12781,-83.5359	1/1:3:0,3,0:0:0:3,0:108,0:-9.74595,-0.90309,0,-9.74595,-0.90309,-9.74595	1/1:78:0,76,2:0:0:76,2:2711,72:-238.276,-22.8783,0,-233.655,-17.9651,-233.053	1/1:36:0,36,0:0:0:36,0:1288,0:-111.054,-10.8371,0,-111.054,-10.8371,-111.054	1/1:6:0,6,0:0:0:6,0:216,0:-18.8298,-1.80618,0,-18.8298,-1.80618,-18.8298	1/1:5:0,5,0:0:0:5,0:180,0:-15.7486,-1.50515,0,-15.7486,-1.50515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chr12	16490712	.	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chr12	16491194	.	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chr12	16613700	.	A	C	25386.2	PASS	AB=0.468968;ABP=30.6386;AC=42;AF=0.223404;AN=188;AO=1554;CIGAR=1X;DP=7967;DPB=7967;DPRA=0.905912;EPP=3377.48;EPPR=13917.8;GTI=3;LEN=1;MEANALT=1.04545;MQM=59.9086;MQMR=59.971;NS=94;NUMALT=1;ODDS=0.693678;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=55560;QR=229211;RO=6408;RPL=0;RPP=3377.48;RPPR=13917.8;RPR=1554;RUN=1;SAF=1554;SAP=3377.48;SAR=0;SRF=6408;SRP=13917.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:53:23,30:23:824:30:1067:-80.3851,0,-58.5287	0/1:70:42,28:42:1504:28:1004:-69.6038,0,-114.582	0/1:143:89,54:89:3166:54:1932:-131.109,0,-242.115	0/0:204:204,0:204:7297:0:0:0,-61.4101,-656.78	0/1:18:13,5:13:468:5:165:-9.75506,0,-37.0411	0/1:18:9,9:9:324:9:316:-23.3603,0,-24.0873	0/0:69:69,0:69:2457:0:0:0,-20.7711,-221.346	0/1:115:76,39:76:2668:39:1388:-90.5917,0,-205.742	0/0:91:91,0:91:3237:0:0:0,-27.3937,-291.551	0/0:68:68,0:68:2421:0:0:0,-20.47,-218.145	0/0:129:129,0:129:4628:0:0:0,-38.8329,-416.682	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/0:106:106,0:106:3797:0:0:0,-31.9092,-341.926	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.813	0/0:88:88,0:88:3156:0:0:0,-26.4906,-284.265	0/0:118:118,0:118:4210:0:0:0,-35.5215,-379.074	0/0:78:78,0:78:2781:0:0:0,-23.4803,-250.53	0/0:42:42,0:42:1497:0:0:0,-12.6433,-135.023	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:100:44,56:44:1584:56:2012:-151.25,0,-112.749	0/1:149:79,69:79:2814:69:2471:-177.68,0,-208.58	0/1:44:10,34:10:360:34:1216:-96.5012,0,-19.499	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/1:31:23,8:23:824:8:288:-16.9355,0,-65.1514	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:145:81,64:81:2874:64:2291:-162.802,0,-215.245	0/0:229:229,0:229:8156:0:0:0,-68.9359,-733.895	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:124:71,53:71:2518:53:1904:-134.308,0,-189.541	0/1:81:33,48:33:1184:48:1709:-129.701,0,-82.4849	0/0:101:98,3:98:3524:3:99:0,-21.1675,-308.132	0/1:12:9,3:9:309:3:108:-6.46281,0,-24.5284	0/1:27:7,20:7:244:20:716:-56.6399,0,-14.1716	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:37:19,18:19:680:18:640:-46.7912,0,-50.3911	0/1:54:26,28:26:936:28:1000:-74.0598,0,-68.3038	0/1:159:78,81:78:2800:81:2904:-213.732,0,-204.376	0/1:49:32,17:32:1137:17:600:-39.5787,0,-87.8819	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.504	0/0:152:152,0:152:5428:0:0:0,-45.7566,-488.646	0/0:75:75,0:75:2688:0:0:0,-22.5772,-242.165	0/1:64:34,30:34:1220:30:1080:-78.2473,0,-90.8409	0/1:87:38,49:38:1360:49:1752:-131.775,0,-96.511	0/0:132:131,0:131:4688:0:0:0,-39.4349,-421.651	0/0:190:190,0:190:6813:0:0:0,-57.1957,-613.237	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:104:104,0:104:3713:0:0:0,-31.3071,-334.371	0/1:52:32,20:32:1148:20:716:-49.1142,0,-87.9763	0/0:19:19,0:19:669:0:0:0,-5.71957,-60.5339	0/0:107:107,0:107:3840:0:0:0,-32.2102,-345.795	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.293	0/1:12:9,3:9:320:3:100:-5.71808,0,-25.53	0/0:120:120,0:120:4225:0:0:0,-36.1236,-380.428	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/1:32:29,3:29:1044:3:108:-0.441271,0,-84.6418	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	0/0:93:93,0:93:3294:0:0:0,-27.9958,-296.676	0/1:125:68,56:68:2448:56:2001:-142.674,0,-182.884	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:97:97,0:97:3465:0:0:0,-29.1999,-312.061	0/1:56:38,18:38:1356:18:648:-41.7942,0,-105.483	0/1:66:57,9:57:2029:9:324:-9.63788,0,-163.013	0/1:165:87,78:87:3105:78:2780:-200.77,0,-229.961	0/1:140:92,48:92:3266:48:1720:-112.941,0,-252.01	0/1:103:46,57:46:1656:57:2048:-153.499,0,-118.322	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315	0/1:38:17,21:17:597:21:756:-56.9281,0,-42.617	0/1:54:34,20:34:1224:20:716:-48.5121,0,-94.2114	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.3434	0/1:84:48,36:48:1724:36:1296:-91.6492,0,-130.159	0/1:91:42,49:42:1508:49:1760:-131.29,0,-108.621	0/1:142:64,78:64:2300:78:2787:-208.324,0,-164.515	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.268	0/1:134:78,56:78:2795:56:1988:-138.856,0,-211.451	0/1:75:34,41:34:1224:41:1459:-109,0,-87.8898	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/0:101:101,0:101:3624:0:0:0,-30.404,-326.356	0/0:130:128,2:128:4558:2:72:0,-32.2972,-403.548	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.474	0/0:166:166,0:166:5952:0:0:0,-49.971,-535.786	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:145:144,0:144:5176:0:0:0,-43.3483,-465.618	0/0:25:24,0:24:856:0:0:0,-7.22472,-77.0014	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:66:66,0:66:2353:0:0:0,-19.868,-212.027	0/0:124:124,0:124:4452:0:0:0,-37.3277,-400.849	0/1:197:96,101:96:3429:101:3612:-265.976,0,-249.519	0/1:120:27,93:27:968:93:3323:-263.15,0,-51.3114	0/0:127:127,0:127:4548:0:0:0,-38.2308,-409.484	0/0:114:114,0:114:4088:0:0:0,-34.3174,-368.103
chr12	16764002	.	G	A	19742.3	PASS	AB=0.450689;ABP=61.2606;AC=40;AF=0.212766;AN=188;AO=1251;CIGAR=1X;DP=6068;DPB=6068;DPRA=1.29731;EPP=2667.66;EPPR=10105.4;GTI=1;LEN=1;MEANALT=1.08696;MQM=59.5468;MQMR=59.946;NS=94;NUMALT=1;ODDS=0.171869;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44136;QR=171096;RO=4811;RPL=1245;RPP=2667.66;RPPR=10114;RPR=6;RUN=1;SAF=1251;SAP=2719.52;SAR=0;SRF=4810;SRP=10441.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:23:18,4:18:635:4:140:-5.9508,0,-50.305	0/1:67:27,40:27:972:40:1424:-108.272,0,-67.6289	0/1:56:43,13:43:1540:13:464:-25.2234,0,-122.035	0/0:137:137,0:137:4880:0:0:0,-41.2411,-439.35	0/1:31:13,18:13:464:18:636:-48.2299,0,-32.7656	0/1:32:17,15:17:608:15:532:-38.5768,0,-45.4191	0/0:102:102,0:102:3643:0:0:0,-30.7051,-328.075	0/1:76:46,30:46:1617:30:1072:-73.906,0,-122.939	0/0:79:78,0:78:2774:0:0:0,-23.4803,-249.352	0/0:96:95,1:95:3379:1:36:0,-25.3006,-300.407	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.843	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/0:38:38,0:38:1326:0:0:0,-11.4391,-119.635	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8545	0/0:36:36,0:36:1257:0:0:0,-10.8371,-113.427	0/0:37:37,0:37:1307:0:0:0,-11.1381,-117.926	0/0:48:48,0:48:1700:0:0:0,-14.4494,-153.286	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:45:45,0:45:1587:0:0:0,-13.5463,-143.12	0/1:131:71,60:71:2516:60:2110:-150.728,0,-187.253	0/1:100:54,46:54:1915:46:1624:-116.341,0,-142.524	0/1:82:27,55:27:952:55:1958:-151.802,0,-61.3107	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549	0/0:43:42,1:42:1492:1:32:0,-9.74498,-131.375	0/0:62:62,0:62:2182:0:0:0,-18.6639,-196.646	0/1:236:138,98:138:4902:98:3413:-236.283,0,-370.021	0/0:147:147,0:147:5233:0:0:0,-44.2514,-471.105	0/0:19:19,0:19:647:0:0:0,-5.71957,-58.546	0/1:191:100,91:100:3552:91:3204:-231.03,0,-262.391	0/1:87:50,37:50:1783:37:1322:-93.0096,0,-134.556	0/0:102:102,0:102:3643:0:0:0,-30.7051,-328.072	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:23:11,12:11:396:12:424:-31.5681,0,-29.0591	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5363	0/1:9:5,4:5:180:4:140:-10.2269,0,-13.8428	0/1:129:66,63:66:2305:63:2239:-162.934,0,-168.876	0/1:108:74,33:74:2639:33:1149:-71.1378,0,-205.187	0/0:63:63,0:63:2228:0:0:0,-18.9649,-200.774	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:114:114,0:114:4053:0:0:0,-34.3174,-364.958	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:89:89,0:89:3184:0:0:0,-26.7917,-286.784	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/1:44:20,24:20:720:24:847:-63.3034,0,-51.8819	0/1:64:33,31:33:1180:31:1104:-80.2952,0,-87.2421	0/0:89:88,1:88:3148:1:36:0,-23.1934,-279.947	0/0:156:155,1:155:5544:1:36:0,-43.3624,-495.487	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.738	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.846	0/1:108:60,48:60:2160:48:1708:-121.47,0,-162.155	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:138:138,0:138:4948:0:0:0,-41.5421,-445.461	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8374	0/1:19:8,11:8:288:11:381:-28.9013,0,-20.5478	0/0:118:118,0:118:4199:0:0:0,-35.5215,-378.09	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.253	0/1:5:4,1:4:140:1:36:-2.08627,0,-11.4394	0/1:15:6,9:6:216:9:316:-24.2587,0,-15.2751	0/0:56:55,0:55:1963:0:0:0,-16.5566,-176.58	0/1:88:38,50:38:1356:50:1734:-129.847,0,-95.8498	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2995	0/0:142:141,1:141:5027:1:36:0,-39.148,-448.977	0/1:84:59,25:59:2108:25:892:-55.3039,0,-164.703	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:60:43,16:43:1544:16:568:-33.4181,0,-121.222	0/1:113:54,58:54:1895:58:2020:-147.987,0,-136.747	0/1:78:44,34:44:1567:34:1216:-86.2583,0,-117.841	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/1:69:44,25:44:1580:25:892:-59.8123,0,-121.717	0/1:45:22,23:22:771:23:805:-59.2164,0,-56.164	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5035	0/1:83:24,59:24:864:59:2073:-161.854,0,-53.0971	0/1:54:25,29:25:896:29:1027:-76.4784,0,-64.7047	0/1:126:79,47:79:2785:47:1676:-113.061,0,-212.959	0/0:77:77,0:77:2747:0:0:0,-23.1793,-247.472	0/1:67:43,24:43:1540:24:833:-55.0289,0,-118.724	0/1:75:44,31:44:1576:31:1087:-75.5601,0,-119.554	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:79:76,3:76:2703:3:108:0,-13.7062,-233.439	0/0:74:74,0:74:2616:0:0:0,-22.2762,-235.687	0/0:125:125,0:125:4444:0:0:0,-37.6287,-400.131	0/0:70:70,0:70:2476:0:0:0,-21.0721,-223.092	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/0:43:43,0:43:1508:0:0:0,-12.9443,-136.01	0/0:72:72,0:72:2536:0:0:0,-21.6742,-228.482	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:42:42,0:42:1470:0:0:0,-12.6433,-132.593	0/0:46:46,0:46:1644:0:0:0,-13.8474,-148.249	0/0:48:48,0:48:1693:0:0:0,-14.4494,-152.654	0/1:117:67,50:67:2358:50:1770:-124.321,0,-177.255	0/1:38:18,20:18:635:20:692:-51.1592,0,-46.0378	0/0:65:65,0:65:2311:0:0:0,-19.5669,-208.25	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367
chr12	16764019	.	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chr12	17080935	.	G	A	213248	PASS	AB=0.494605;ABP=4.43964;AC=150;AF=0.797872;AN=188;AO=9717;CIGAR=1X;DP=12597;DPB=12597;DPRA=0;EPP=20056.8;EPPR=5859.34;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.9818;MQMR=60;NS=94;NUMALT=1;ODDS=0.638009;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=348216;QR=102732;RO=2878;RPL=118;RPP=20090.7;RPPR=5876.17;RPR=9599;RUN=1;SAF=9713;SAP=21068.5;SAR=4;SRF=2876;SRP=6235.15;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:40,21:40:1432:21:756:-50.0044,0,-110.815	0/1:242:120,122:120:4296:122:4384:-321.882,0,-313.968	0/1:183:75,108:75:2692:108:3863:-292.776,0,-187.436	1/1:281:0,281:0:0:281:10088:-907.848,-84.5894,0	0/1:127:52,75:52:1845:75:2692:-204.293,0,-128.097	0/1:82:41,41:41:1472:41:1476:-108.452,0,-108.092	1/1:207:0,207:0:0:207:7417:-667.566,-62.3132,0	0/1:227:113,114:113:4048:114:4066:-297.731,0,-296.173	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0	1/1:175:0,175:0:0:175:6274:-564.752,-52.6803,0	1/1:72:0,72:0:0:72:2579:-232.359,-21.6742,0	1/1:95:0,95:0:0:95:3416:-307.653,-28.5979,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	1/1:67:1,66:1:36:66:2357:-208.766,-16.5707,0	1/1:104:0,104:0:0:104:3732:-336.08,-31.3071,0	1/1:65:0,65:0:0:65:2319:-208.969,-19.567,0	1/1:72:0,72:0:0:72:2579:-232.359,-21.6742,0	1/1:74:1,73:1:36:73:2624:-232.809,-18.6779,0	1/1:58:0,58:0:0:58:2065:-186.119,-17.4597,0	0/1:345:166,179:166:5934:179:6419:-473.941,0,-430.313	0/1:222:106,116:106:3781:116:4146:-306.492,0,-273.659	0/1:148:99,48:99:3541:48:1720:-110.474,0,-274.286	1/1:83:3,80:3:104:80:2876:-249.373,-15.2827,0	1/1:190:7,183:7:252:183:6549:-566.462,-34.1667,0	1/1:162:2,160:2:72:160:5739:-509.788,-41.9301,0	0/1:388:187,201:187:6676:201:7219:-532.961,0,-484.117	1/1:248:0,248:0:0:248:8900:-800.911,-74.6554,0	1/1:51:0,51:0:0:51:1836:-165.521,-15.3525,0	0/1:413:214,199:214:7650:199:7099:-514.642,0,-564.211	0/1:170:92,78:92:3289:78:2800:-201.064,0,-245.053	1/1:132:0,132:0:0:132:4721:-425.048,-39.736,0	0/1:14:5,9:5:168:9:324:-25.2914,0,-11.2365	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:3,4:3:108:4:136:-10.4683,0,-7.96796	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:310:167,143:167:5991:143:5136:-369.06,0,-445.974	0/1:249:120,129:120:4304:129:4636:-342.444,0,-312.579	1/1:100:1,99:1:36:99:3564:-317.368,-26.5047,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:269:0,269:0:0:269:9641:-867.639,-80.9771,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	1/1:194:0,194:0:0:194:6941:-624.749,-58.3998,0	1/1:83:0,83:0:0:83:2963:-266.903,-24.9855,0	0/1:89:49,40:49:1760:40:1432:-102.386,0,-131.892	0/1:82:38,44:38:1360:44:1580:-117.807,0,-98.0161	1/1:163:0,163:0:0:163:5840:-525.71,-49.0679,0	1/1:219:0,219:0:0:219:7811:-703.017,-65.9256,0	1/1:165:0,165:0:0:165:5913:-532.275,-49.67,0	1/1:188:0,188:0:0:188:6720:-604.872,-56.5936,0	0/1:150:63,87:63:2232:87:3124:-236.231,0,-155.987	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:289:0,289:0:0:289:10357:-932.046,-86.9977,0	1/1:75:0,75:0:0:75:2681:-241.533,-22.5773,0	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	1/1:193:0,193:0:0:193:6914:-622.321,-58.0988,0	1/1:49:1,48:1:36:48:1724:-151.847,-11.1522,0	1/1:13:0,13:0:0:13:456:-41.3732,-3.91339,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:131:0,131:0:0:131:4700:-423.159,-39.4349,0	0/1:148:70,78:70:2499:78:2782:-206.067,0,-180.61	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:233:0,233:0:0:233:8368:-753.122,-70.14,0	0/1:253:121,132:121:4326:132:4736:-350.237,0,-313.354	1/1:128:7,121:7:252:121:4310:-365.046,-15.5029,0	0/1:112:64,48:64:2277:48:1715:-120.919,0,-171.475	0/1:198:117,81:117:4157:81:2906:-202.171,0,-314.71	0/1:179:128,50:128:4588:50:1792:-107.619,0,-359.141	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:107:51,56:51:1780:56:2012:-149.143,0,-128.267	0/1:130:57,73:57:2044:73:2620:-196.913,0,-145.098	1/1:38:0,38:0:0:38:1349:-121.708,-11.4391,0	0/1:157:63,94:63:2236:94:3376:-256.793,0,-154.24	0/1:104:51,53:51:1828:53:1896:-139.611,0,-133.494	0/1:189:97,92:97:3399:92:3269:-237.515,0,-249.228	1/1:243:0,243:0:0:243:8717:-784.517,-73.1503,0	0/1:151:70,81:70:2480:81:2886:-214.519,0,-177.997	0/1:166:91,75:91:3245:75:2681:-191.517,0,-242.299	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:196:0,196:0:0:196:7010:-630.96,-59.0019,0	1/1:152:0,152:0:0:152:5468:-492.245,-45.7566,0	1/1:294:0,294:0:0:294:10548:-949.231,-88.5028,0	1/1:172:0,172:0:0:172:6183:-556.564,-51.7772,0	1/1:69:0,69:0:0:69:2484:-223.813,-20.7711,0	1/1:85:0,85:0:0:85:3048:-274.549,-25.5876,0	1/1:193:0,193:0:0:193:6921:-622.953,-58.0988,0	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	1/1:82:0,82:0:0:82:2940:-264.804,-24.6845,0	1/1:75:0,75:0:0:75:2686:-241.984,-22.5773,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:108:49,59:49:1742:59:2112:-157.838,0,-124.552	0/1:85:47,38:47:1684:38:1364:-97.4732,0,-126.259	1/1:154:0,154:0:0:154:5503:-495.395,-46.3586,0	1/1:152:0,152:0:0:152:5454:-490.986,-45.7566,0
chr12	17094284	.	C	T	31474.2	PASS	AB=0.479306;ABP=14.1547;AC=41;AF=0.218085;AN=188;AO=1447;CIGAR=1X;DP=7850;DPB=7850;DPRA=0.925585;EPP=3145.13;EPPR=13893.9;GTI=3;LEN=1;MEANALT=1;MQM=59.9295;MQMR=59.9745;NS=94;NUMALT=1;ODDS=0.583414;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=50804;QR=225592;RO=6401;RPL=729;RPP=3.19188;RPPR=4.19119;RPR=718;RUN=1;SAF=729;SAP=3.19188;SAR=718;SRF=3170;SRP=4.27261;SRR=3231;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:29:20,9:20:707:9:309:-19.4108,0,-55.2247	0/1:45:26,19:26:917:19:672:-47.2605,0,-69.2983	0/1:107:55,52:55:1938:52:1830:-132.768,0,-142.485	0/0:219:219,0:219:7723:0:0:0,-65.9256,-695.111	0/1:24:11,13:11:392:13:456:-34.1485,0,-28.3953	0/1:27:15,12:15:536:12:428:-30.731,0,-40.447	0/0:57:57,0:57:2014:0:0:0,-17.1587,-181.532	0/1:128:53,75:53:1872:75:2620:-197.514,0,-130.225	0/0:97:97,0:97:3431:0:0:0,-29.1999,-308.996	0/0:94:94,0:94:3317:0:0:0,-28.2968,-298.75	0/0:87:87,0:87:3067:0:0:0,-26.1896,-276.259	0/0:163:163,0:163:5744:0:0:0,-49.0679,-517.083	0/0:103:103,0:103:3619:0:0:0,-31.0061,-325.915	0/0:85:85,0:85:2973:0:0:0,-25.5875,-267.803	0/0:112:112,0:112:3901:0:0:0,-33.7154,-351.287	0/0:79:79,0:79:2785:0:0:0,-23.7814,-250.889	0/0:86:86,0:86:3025:0:0:0,-25.8886,-272.48	0/0:61:61,0:61:2134:0:0:0,-18.3628,-192.325	0/0:65:65,0:65:2242:0:0:0,-19.5669,-202.04	0/1:80:37,43:37:1310:43:1521:-113.099,0,-94.1177	0/1:127:74,53:74:2639:53:1833:-127.014,0,-199.526	0/1:32:13,19:13:464:19:656:-49.7265,0,-32.4645	0/0:92:91,1:91:3230:1:36:0,-24.0965,-287.324	0/1:33:28,5:28:988:5:172:-5.88398,0,-79.2999	0/0:40:40,0:40:1414:0:0:0,-12.0412,-127.328	0/1:160:82,78:82:2918:78:2707:-195.708,0,-214.689	0/0:179:179,0:179:6336:0:0:0,-53.8844,-570.242	0/0:68:67,0:67:2383:0:0:0,-20.169,-214.363	0/1:206:111,95:111:3916:95:3343:-239.075,0,-290.624	0/1:94:51,43:51:1788:43:1517:-108.524,0,-132.903	0/0:95:95,0:95:3388:0:0:0,-28.5978,-305.136	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:307:172,135:172:6032:135:4726:-333.088,0,-450.576	0/1:58:36,22:36:1264:22:788:-53.7851,0,-96.6	0/0:81:81,0:81:2892:0:0:0,-24.3834,-260.517	0/1:5:1,4:1:36:4:116:-9.22237,0,-2.09312	0/0:88:88,0:88:3080:0:0:0,-26.4906,-277.428	0/0:46:46,0:46:1630:0:0:0,-13.8474,-146.987	0/0:91:88,3:88:3062:3:108:0,-17.3186,-265.729	0/0:100:100,0:100:3497:0:0:0,-30.103,-314.941	0/1:101:43,58:43:1502:58:2038:-153.287,0,-105.068	0/1:67:42,25:42:1500:25:891:-60.3398,0,-115.126	0/0:91:91,0:91:3215:0:0:0,-27.3937,-289.573	0/0:131:131,0:131:4640:0:0:0,-39.4349,-417.765	0/0:63:63,0:63:2205:0:0:0,-18.9649,-198.712	0/0:141:139,2:139:4939:2:72:0,-35.6085,-437.82	0/1:41:16,25:16:568:25:883:-67.4452,0,-39.1096	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:59:59,0:59:2054:0:0:0,-17.7608,-185.128	0/0:65:64,0:64:2238:0:0:0,-19.2659,-201.469	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:96:96,0:96:3376:0:0:0,-28.8989,-304.058	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:14:12,2:12:428:2:64:-1.86427,0,-34.6444	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:92:92,0:92:3225:0:0:0,-27.6948,-290.469	0/1:140:79,61:79:2802:61:2164:-152.872,0,-210.276	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:170:170,0:170:5978:0:0:0,-51.1751,-538.13	0/1:114:45,69:45:1593:69:2431:-184.72,0,-109.341	0/0:81:79,2:79:2788:2:68:0,-17.9257,-244.702	0/1:53:15,38:15:495:38:1334:-104.404,0,-28.9065	0/1:98:55,43:55:1951:43:1516:-107.229,0,-146.36	0/1:106:54,52:54:1893:52:1821:-132.258,0,-138.735	0/0:89:89,0:89:3155:0:0:0,-26.7917,-284.177	0/1:38:19,19:19:667:19:680:-50.09,0,-48.9155	0/1:72:42,30:42:1492:30:1045:-72.6826,0,-112.9	0/0:49:49,0:49:1740:0:0:0,-14.7505,-156.884	0/1:60:43,17:43:1505:17:600:-36.1603,0,-117.679	0/1:92:38,54:38:1348:54:1896:-143.203,0,-93.9255	0/1:123:82,41:82:2896:41:1431:-92.055,0,-223.848	0/0:112:112,0:112:3968:0:0:0,-33.7154,-357.305	0/1:29:13,16:13:468:16:549:-41.0017,0,-33.7298	0/1:78:33,45:33:1162:45:1601:-120.899,0,-81.405	0/1:14:7,7:7:243:7:252:-18.8145,0,-17.9931	0/0:84:83,1:83:2936:1:36:0,-21.6882,-260.876	0/0:58:58,0:58:2033:0:0:0,-17.4597,-183.241	0/0:106:106,0:106:3712:0:0:0,-31.9092,-334.283	0/0:100:100,0:100:3522:0:0:0,-30.103,-317.188	0/0:103:103,0:103:3628:0:0:0,-31.0061,-326.728	0/0:67:67,0:67:2325:0:0:0,-20.169,-209.508	0/0:204:203,1:203:7124:1:36:0,-57.8118,-637.629	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:116:116,0:116:4077:0:0:0,-34.9195,-367.119	0/0:123:123,0:123:4336:0:0:0,-37.0267,-390.374	0/0:74:74,0:74:2595:0:0:0,-22.2762,-233.796	0/1:171:84,87:84:2969:87:3058:-223.866,0,-215.966	0/1:103:41,62:41:1459:62:2180:-165.459,0,-100.599	0/0:99:99,0:99:3498:0:0:0,-29.802,-315.031	0/0:186:186,0:186:6524:0:0:0,-55.9916,-587.248
chr12	17094332	.	C	T	72282.6	PASS	AB=0.512638;ABP=5.15081;AC=148;AF=0.795699;AN=186;AO=3339;CIGAR=1X;DP=4097;DPB=4097;DPRA=44.5217;EPP=7253.56;EPPR=1648.99;GTI=3;LEN=1;MEANALT=1;MQM=59.9554;MQMR=59.9024;NS=93;NUMALT=1;ODDS=0.963344;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119468;QR=27000;RO=758;RPL=3339;RPP=7253.56;RPPR=1648.99;RPR=0;RUN=1;SAF=0;SAP=7253.56;SAR=3339;SRF=0;SRP=1648.99;SRR=758;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:30:16,14:16:572:14:504:-36.6672,0,-42.7825	0/1:52:29,23:29:1040:23:828:-59.1906,0,-78.2608	1/1:98:1,97:1:36:97:3480:-309.813,-25.9027,0	0/1:14:5,9:5:176:9:324:-25.2914,0,-11.9706	0/1:12:7,5:7:248:5:180:-12.9397,0,-19.0518	1/1:38:0,38:0:0:38:1326:-119.636,-11.4391,0	0/1:66:37,29:37:1317:29:1040:-74.0464,0,-98.9619	1/1:58:0,58:0:0:58:2058:-185.487,-17.4597,0	1/1:48:0,48:0:0:48:1698:-153.102,-14.4494,0	1/1:62:0,62:0:0:62:2224:-200.422,-18.6639,0	1/1:91:0,91:0:0:91:3265:-294.064,-27.3937,0	1/1:62:0,62:0:0:62:2228:-200.776,-18.6639,0	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:36:24,12:24:860:12:428:-28.0217,0,-66.8848	0/1:78:31,47:31:1112:47:1684:-128.367,0,-76.911	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:16:2,14:2:68:14:496:-40.1578,0,-1.64123	1/1:13:0,13:0:0:13:453:-41.0996,-3.91339,0	0/1:70:25,45:25:869:45:1620:-125.017,0,-57.4518	1/1:91:0,91:0:0:91:3249:-292.625,-27.3937,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	0/1:85:37,48:37:1328:48:1716:-129.138,0,-94.2347	0/1:65:32,33:32:1144:33:1169:-85.945,0,-83.7026	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	0/1:154:67,87:67:2395:87:3128:-235.387,0,-169.448	0/1:25:12,13:12:420:13:468:-34.9339,0,-30.5509	1/1:53:1,52:1:36:52:1864:-164.441,-12.3563,0	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:44:0,44:0:0:44:1565:-141.135,-13.2453,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:47:28,19:28:1004:19:684:-47.7419,0,-76.5275	0/1:26:11,15:11:377:15:540:-41.1098,0,-26.4312	1/1:48:0,48:0:0:48:1709:-154.094,-14.4494,0	1/1:89:0,89:0:0:89:3165:-285.073,-26.7917,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:21:14,7:14:500:7:252:-16.7073,0,-39.0145	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:39:0,39:0:0:39:1370:-123.595,-11.7402,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	.:.:.:.:.:.:.:.	1/1:51:0,51:0:0:51:1801:-162.366,-15.3525,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:18:0,18:0:0:18:633:-57.2951,-5.41854,0	1/1:62:0,62:0:0:62:2220:-200.059,-18.6639,0	0/1:73:32,41:32:1148:41:1476:-111.161,0,-81.644	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:53:0,53:0:0:53:1900:-171.27,-15.9546,0	0/1:53:27,26:27:964:26:936:-68.6049,0,-71.1222	1/1:46:1,45:1:36:45:1606:-141.231,-10.2491,0	0/1:31:23,8:23:820:8:288:-16.9355,0,-64.7906	0/1:30:16,14:16:561:14:494:-35.7612,0,-41.7862	0/1:73:39,34:39:1380:34:1205:-86.7787,0,-102.523	1/1:70:0,70:0:0:70:2512:-226.332,-21.0721,0	0/1:32:20,12:20:716:12:428:-29.2258,0,-55.1348	0/1:37:16,21:16:576:21:756:-57.2291,0,-41.0369	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:26:4,22:4:144:22:788:-63.418,0,-5.48684	0/1:34:22,12:22:784:12:424:-28.2614,0,-60.6489	0/1:88:27,61:27:953:61:2177:-169.704,0,-59.5927	1/1:60:0,60:0:0:60:2148:-193.581,-18.0618,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:30:14,16:14:504:16:572:-42.7743,0,-36.6672	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:53:0,53:0:0:53:1869:-168.485,-15.9546,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:99:1,98:1:36:98:3512:-312.692,-26.2037,0	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	1/1:64:0,64:0:0:64:2304:-207.618,-19.2659,0	1/1:64:0,64:0:0:64:2287:-205.976,-19.2659,0	1/1:51:0,51:0:0:51:1820:-164.079,-15.3525,0	0/1:135:71,64:71:2520:64:2285:-165.266,0,-186.14	0/1:53:35,18:35:1244:18:644:-42.336,0,-96.3101	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	1/1:83:0,83:0:0:83:2980:-268.432,-24.9855,0
chr12	17192149	.	C	T	1114.01	PASS	AB=0.182074;ABP=1560.48;AC=23;AF=0.12234;AN=188;AO=364;CIGAR=1X;DP=8821;DPB=8821;DPRA=0.750071;EPP=793.426;EPPR=18239.2;GTI=11;LEN=1;MEANALT=1.05882;MQM=59.9615;MQMR=59.9804;NS=94;NUMALT=1;ODDS=0.00934428;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=13005;QR=301489;RO=8454;RPL=0;RPP=793.426;RPPR=18247.9;RPR=364;RUN=1;SAF=364;SAP=793.426;SAR=0;SRF=8453;SRP=18352;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:18,7:18:648:7:248:-15.1384,0,-51.1261	0/0:94:88,6:88:3123:6:216:0,-8.50631,-261.507	0/0:76:71,5:71:2531:5:180:0,-6.32621,-211.489	0/0:249:249,0:249:8866:0:0:0,-74.9565,-797.93	0/0:59:56,3:56:2000:3:108:0,-7.6856,-170.199	0/1:29:25,4:25:887:4:144:-4.58375,0,-71.3997	0/0:178:178,0:178:6312:0:0:0,-53.5833,-568.178	0/1:87:79,8:79:2820:8:288:-0.0768803,0,-227.85	0/0:155:155,0:155:5531:0:0:0,-46.6596,-497.917	0/0:141:141,0:141:5002:0:0:0,-42.4452,-450.331	0/0:72:72,0:72:2559:0:0:0,-21.6742,-230.56	0/0:104:104,0:104:3698:0:0:0,-31.3071,-333.023	0/0:69:69,0:69:2456:0:0:0,-20.7711,-221.295	0/0:54:54,0:54:1920:0:0:0,-16.2556,-173.077	0/0:81:81,0:81:2896:0:0:0,-24.3834,-260.876	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.353	0/0:66:66,0:66:2347:0:0:0,-19.868,-211.489	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/0:53:53,0:53:1888:0:0:0,-15.9546,-170.198	0/0:147:143,4:143:5082:4:144:0,-30.9378,-444.214	0/1:95:83,12:83:2984:12:432:-10.6233,0,-240.183	0/1:58:38,20:38:1364:20:716:-47.308,0,-105.601	0/0:104:104,0:104:3710:0:0:0,-31.3071,-334.102	0/0:165:165,0:165:5899:0:0:0,-49.6699,-531.02	0/0:96:96,0:96:3426:0:0:0,-28.8989,-308.553	0/1:185:155,30:155:5564:30:1061:-40.0997,0,-445.191	0/0:282:282,0:282:10059:0:0:0,-84.8905,-905.247	0/0:50:50,0:50:1767:0:0:0,-15.0515,-159.313	0/1:195:165,29:165:5896:29:1044:-35.5152,0,-471.992	0/1:56:46,10:46:1632:10:356:-15.5236,0,-130.311	0/0:158:158,0:158:5622:0:0:0,-47.5627,-506.104	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:16:15,1:15:536:1:36:0,-1.2182,-44.9765	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:162:138,24:138:4926:24:852:-28.2335,0,-394.722	0/1:85:67,18:67:2391:18:636:-31.9805,0,-189.859	0/0:72:72,0:72:2571:0:0:0,-21.6742,-231.639	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:142:142,0:142:5049:0:0:0,-42.7463,-454.557	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:205:205,0:205:7297:0:0:0,-61.7111,-656.74	0/0:98:98,0:98:3516:0:0:0,-29.5009,-316.649	0/1:39:35,4:35:1244:4:140:-1.20441,0,-100.524	0/1:63:47,16:47:1680:16:568:-32.487,0,-132.522	0/0:146:146,0:146:5206:0:0:0,-43.9504,-468.68	0/0:222:222,0:222:7918:0:0:0,-66.8287,-712.644	0/0:127:127,0:127:4497:0:0:0,-38.2308,-404.902	0/0:177:177,0:177:6310:0:0:0,-53.2823,-567.995	0/1:132:114,18:114:4075:18:640:-18.1934,0,-327.2	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:193:193,0:193:6881:0:0:0,-58.0988,-619.359	0/0:48:48,0:48:1706:0:0:0,-14.4494,-153.824	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:208:208,0:208:7418:0:0:0,-62.6142,-667.668	0/0:53:52,1:52:1847:1:36:0,-12.3563,-162.911	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:102:102,0:102:3635:0:0:0,-30.7051,-326.579	0/1:71:54,17:54:1936:17:612:-34.0403,0,-153.143	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:211:211,0:211:7564:0:0:0,-63.5173,-680.798	0/1:117:99,18:99:3544:18:648:-23.4314,0,-283.948	0/0:53:53,0:53:1899:0:0:0,-15.9546,-171.187	0/0:72:69,3:69:2463:3:108:0,-11.599,-211.849	0/0:92:85,7:85:3020:7:248:0,-5.03056,-249.368	0/1:83:68,15:68:2428:15:539:-23.8607,0,-193.79	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:47:44,3:44:1559:3:108:0,-4.07324,-130.526	0/1:52:40,12:40:1436:12:432:-23.5676,0,-113.884	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:54:32,22:32:1140:22:777:-53.9947,0,-86.6536	0/1:49:40,9:40:1424:9:324:-14.7554,0,-113.707	0/0:105:101,3:101:3611:3:108:0,-21.5918,-315.12	0/0:228:228,0:228:8160:0:0:0,-68.6348,-734.415	0/1:56:47,9:47:1680:9:324:-12.6482,0,-134.629	0/0:96:91,5:91:3251:5:180:0,-12.3468,-275.632	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:198:197,0:197:7044:0:0:0,-59.3029,-633.593	0/0:148:148,0:148:5296:0:0:0,-44.5524,-476.775	0/0:393:393,0:393:13980:0:0:0,-118.305,-1257.61	0/0:93:93,0:93:3310:0:0:0,-27.9958,-298.119	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193	0/0:160:160,0:160:5676:0:0:0,-48.1648,-510.963	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:84:84,0:84:2995:0:0:0,-25.2865,-269.782	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.918	0/0:26:26,0:26:911:0:0:0,-7.82678,-82.3043	0/1:44:31,13:31:1112:13:464:-28.8522,0,-87.146	0/1:30:23,7:23:824:7:252:-13.9981,0,-65.4524	0/0:157:157,0:157:5587:0:0:0,-47.2617,-502.956	0/0:134:134,0:134:4752:0:0:0,-40.338,-427.84
chr12	17193216	.	C	A	20716.7	PASS	AB=0.509195;ABP=4.80729;AC=38;AF=0.202128;AN=188;AO=1250;CIGAR=1X;DP=4820;DPB=4820;DPRA=1.54142;EPP=2717.35;EPPR=7748.65;GTI=3;LEN=1;MEANALT=1.07143;MQM=59.96;MQMR=59.9739;NS=94;NUMALT=1;ODDS=0.405573;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44575;QR=126779;RO=3567;RPL=0;RPP=2717.35;RPPR=7748.65;RPR=1250;RUN=1;SAF=0;SAP=2717.35;SAR=1250;SRF=0;SRP=7748.65;SRR=3567;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:46:25,21:25:887:21:747:-53.7069,0,-66.3007	0/1:55:34,21:34:1211:21:743:-50.6367,0,-92.7389	0/1:204:113,91:113:4016:91:3222:-228.79,0,-300.219	0/0:137:137,0:137:4850:0:0:0,-41.2411,-436.656	0/1:48:23,25:23:816:25:900:-66.867,0,-59.3123	0/1:16:5,11:5:180:11:392:-30.8036,0,-11.7356	0/0:65:65,0:65:2308:0:0:0,-19.5669,-207.981	0/1:82:44,38:44:1567:38:1364:-98.3763,0,-116.636	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.133	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:35:35,0:35:1233:0:0:0,-10.536,-111.272	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:98:39,59:39:1404:59:2116:-161.208,0,-97.1583	0/1:74:28,46:28:1000:46:1631:-124.802,0,-67.9519	0/1:90:37,53:37:1320:53:1904:-144.545,0,-92.0092	0/0:90:89,1:89:3179:1:36:0,-23.4944,-282.736	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/0:39:39,0:39:1385:0:0:0,-11.7402,-124.947	0/1:169:71,98:71:2512:98:3508:-265.056,0,-175.457	0/0:115:115,0:115:4100:0:0:0,-34.6184,-369.184	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:135:65,69:65:2315:69:2455:-180.506,0,-167.912	0/1:90:42,48:42:1479:48:1704:-126.55,0,-106.311	0/0:86:86,0:86:3028:0:0:0,-25.8886,-272.622	0/1:7:4,3:4:114:3:108:-7.96796,0,-8.4345	0/1:9:4,5:4:140:5:180:-13.8419,0,-10.2353	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:17:10,7:10:356:7:248:-17.5467,0,-27.2637	0/1:15:7,8:7:252:8:282:-21.2056,0,-18.5135	0/1:90:28,62:28:990:62:2209:-171.982,0,-62.32	0/1:89:46,43:46:1636:43:1540:-112.097,0,-120.737	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:83:83,0:83:2963:0:0:0,-24.9855,-266.903	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:81:81,0:81:2879:0:0:0,-24.3834,-259.347	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:17:7,10:7:230:10:360:-27.6268,0,-15.9037	0/1:56:36,19:36:1288:19:684:-44.3444,0,-99.3072	0/0:49:49,0:49:1748:0:0:0,-14.7505,-157.604	0/0:107:107,0:107:3799:0:0:0,-32.2102,-342.11	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927	0/0:69:69,0:69:2446:0:0:0,-20.7711,-220.395	0/1:93:47,45:47:1688:45:1620:-118.035,0,-124.152	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:82:81,1:81:2882:1:32:0,-21.4851,-256.361	0/0:25:25,0:25:884:0:0:0,-7.52575,-79.8784	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:34:33,1:33:1156:1:36:0,-6.63674,-100.745	0/1:55:35,20:35:1231:20:716:-48.2111,0,-94.5366	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:51:51,0:51:1807:0:0:0,-15.3525,-162.911	0/1:80:45,35:45:1589:35:1260:-89.6231,0,-119.216	0/0:20:19,1:19:684:1:36:0,-2.42232,-58.2921	0/1:53:29,24:29:1032:24:860:-61.7672,0,-77.2389	0/1:92:51,41:51:1803:41:1459:-103.91,0,-134.856	0/1:86:32,54:32:1144:54:1917:-146.917,0,-77.3809	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	0/1:25:9,16:9:324:16:576:-44.6492,0,-21.9801	0/1:28:17,11:17:603:11:396:-27.5539,0,-46.1707	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3237	0/1:117:58,59:58:2056:59:2086:-152.786,0,-150.091	0/1:42:18,24:18:648:24:846:-63.8145,0,-46.0086	0/1:95:49,46:49:1732:46:1631:-118.48,0,-127.564	0/0:101:101,0:101:3588:0:0:0,-30.404,-323.127	0/1:110:64,46:64:2280:46:1624:-113.333,0,-172.349	0/1:59:30,29:30:1076:29:1044:-76.514,0,-79.3921	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:50:50,0:50:1776:0:0:0,-15.0515,-160.123	0/0:109:109,0:109:3881:0:0:0,-32.8123,-349.484	0/0:87:87,0:87:3098:0:0:0,-26.1896,-279.047	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:55:55,0:55:1947:0:0:0,-16.5566,-175.505	0/0:16:16,0:16:558:0:0:0,-4.81648,-50.5465	0/0:28:28,0:28:986:0:0:0,-8.42884,-89.0522	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/1:42:21,21:21:743:21:739:-54.1891,0,-54.5501	0/1:38:10,28:10:360:28:1004:-79.2367,0,-21.3052	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.9549
chr12	17262235	.	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chr12	17603681	.	T	C	182352	PASS	AB=0.456542;ABP=90.3946;AC=149;AF=0.792553;AN=188;AO=8606;CIGAR=1X;DP=11518;DPB=11518;DPRA=0;EPP=18690.7;EPPR=6317.65;GTI=2;LEN=1;MEANALT=1.04255;MQM=59.9735;MQMR=59.9381;NS=94;NUMALT=1;ODDS=2.71346;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=307896;QR=104090;RO=2908;RPL=0;RPP=18690.7;RPPR=6317.65;RPR=8606;RUN=1;SAF=8606;SAP=18690.7;SAR=0;SRF=2908;SRP=6317.65;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:114:63,51:63:2244:51:1814:-129.223,0,-167.906	0/1:108:38,70:38:1352:70:2499:-192.622,0,-89.4691	0/1:257:121,136:121:4333:136:4845:-358.841,0,-312.672	1/1:332:0,332:0:0:332:11894:-1070.24,-99.942,0	0/1:85:40,45:40:1436:45:1612:-119.783,0,-103.579	0/1:31:19,12:19:684:12:428:-29.5269,0,-52.5584	1/1:92:0,92:0:0:92:3292:-296.499,-27.6948,0	0/1:210:123,87:123:4384:87:3113:-217.18,0,-330.892	1/1:146:0,145:0:0:145:5179:-465.891,-43.6494,0	1/1:109:0,109:0:0:109:3908:-351.913,-32.8123,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	1/1:118:0,118:0:0:118:4211:-378.544,-35.5215,0	1/1:73:0,73:0:0:73:2628:-236.766,-21.9752,0	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	1/1:75:0,75:0:0:75:2684:-241.805,-22.5773,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:23:0,23:0:0:23:818:-73.9419,-6.92369,0	0/1:255:136,119:136:4876:119:4268:-307.535,0,-362.229	0/1:290:149,141:149:5331:141:5032:-365.726,0,-392.351	0/1:158:115,43:115:4128:43:1532:-90.5928,0,-324.112	1/1:192:3,189:3:108:189:6762:-598.579,-47.7226,0	1/1:87:3,84:3:108:84:2997:-259.885,-16.1144,0	1/1:137:0,137:0:0:137:4889:-440.162,-41.2411,0	0/1:340:170,170:170:6084:170:6086:-445.489,0,-445.311	1/1:210:0,210:0:0:210:7524:-677.2,-63.2163,0	1/1:32:0,32:0:0:32:1146:-103.449,-9.63296,0	0/1:377:201,176:201:7212:176:6288:-452.525,0,-535.642	0/1:200:110,90:110:3928:90:3232:-230.895,0,-293.508	1/1:113:0,113:0:0:113:4022:-362.166,-34.0164,0	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:14:10,4:10:356:4:144:-9.0992,0,-28.1659	0/1:22:2,20:2:72:20:716:-58.1451,0,-0.214062	0/1:174:82,92:82:2935:92:3312:-245.918,0,-212.004	0/1:146:73,73:73:2612:73:2604:-190.658,0,-191.378	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	1/1:175:0,175:0:0:175:6234:-561.147,-52.6803,0	1/1:21:0,21:0:0:21:741:-67.0116,-6.32163,0	1/1:307:2,305:2:72:305:10903:-974.332,-85.5795,0	1/1:88:0,88:0:0:88:3168:-285.343,-26.4906,0	0/1:52:24,28:24:864:28:996:-74.3013,0,-62.429	0/1:166:98,68:98:3500:68:2434:-169.341,0,-265.223	1/1:207:0,207:0:0:207:7395:-665.587,-62.3132,0	1/1:271:0,270:0:0:270:9657:-868.871,-81.2781,0	1/1:133:0,133:0:0:133:4757:-428.285,-40.037,0	1/1:218:0,218:0:0:218:7805:-702.476,-65.6245,0	0/1:152:82,70:82:2944:70:2516:-180.934,0,-219.436	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:189:0,189:0:0:189:6780:-610.271,-56.8947,0	1/1:73:0,73:0:0:73:2624:-236.402,-21.9752,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	1/1:210:1,209:1:36:209:7468:-668.564,-59.618,0	1/1:44:0,44:0:0:44:1567:-141.32,-13.2453,0	0/1:40:13,27:13:453:27:955:-74.2236,0,-29.0584	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:66:0,65:0:0:65:2316:-208.38,-19.567,0	0/1:80:32,48:32:1139:48:1728:-131.723,0,-78.736	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:267:0,267:0:0:267:9572:-861.431,-80.375,0	0/1:283:155,128:155:5546:128:4592:-328.251,0,-414.069	1/1:84:3,81:3:108:81:2889:-250.178,-15.2198,0	0/1:123:70,53:70:2508:53:1883:-132.721,0,-188.946	0/1:237:129,107:129:4628:107:3836:-274.182,0,-345.427	0/1:176:138,38:138:4943:38:1356:-69.3583,0,-392.037	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:59:36,23:36:1296:23:824:-56.7225,0,-99.1832	0/1:36:21,15:21:752:15:536:-37.7377,0,-57.1692	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:129:71,58:71:2548:58:2080:-148.636,0,-190.737	0/1:110:51,59:51:1836:59:2092:-155.436,0,-132.407	0/1:320:189,131:189:6744:131:4692:-326.111,0,-510.705	1/1:237:0,237:0:0:237:8508:-765.716,-71.3441,0	0/1:180:94,86:94:3357:86:3075:-222.792,0,-248.159	0/1:134:87,47:87:3101:47:1688:-111.869,0,-238.977	0/1:23:11,12:11:396:12:432:-32.2975,0,-29.0591	1/1:136:1,135:1:36:135:4844:-432.506,-37.3418,0	1/1:200:1,199:1:32:199:7085:-634.511,-57.0067,0	1/1:242:0,242:0:0:242:8668:-780.111,-72.8493,0	1/1:68:0,68:0:0:68:2436:-219.495,-20.47,0	1/1:67:0,67:0:0:67:2385:-214.906,-20.169,0	1/1:43:0,43:0:0:43:1527:-137.722,-12.9443,0	1/1:140:0,140:0:0:140:4992:-449.298,-42.1442,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:67:0,67:0:0:67:2408:-216.976,-20.169,0	1/1:89:0,89:0:0:89:3201:-288.312,-26.7917,0	1/1:33:0,33:0:0:33:1179:-106.417,-9.93399,0	0/1:90:40,50:40:1440:50:1796:-134.83,0,-102.805	0/1:100:69,31:69:2476:31:1107:-69.8372,0,-192.99	1/1:197:0,197:0:0:197:7057:-635.19,-59.3029,0	1/1:129:0,129:0:0:129:4609:-414.973,-38.8329,0
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chr12	17645079	.	G	A	10641.9	PASS	AB=0.470925;ABP=10.7129;AC=33;AF=0.175532;AN=188;AO=510;CIGAR=1X;DP=4459;DPB=4459;DPRA=0.675249;EPP=3.16358;EPPR=341.082;GTI=2;LEN=1;MEANALT=1;MQM=59.5784;MQMR=59.9734;NS=94;NUMALT=1;ODDS=2.19828;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=18150;QR=140693;RO=3948;RPL=510;RPP=1110.46;RPPR=8368.79;RPR=0;RUN=1;SAF=258;SAP=3.16358;SAR=252;SRF=1560;SRP=380.094;SRR=2388;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:8,10:8:284:10:360:-27.308,0,-20.4848	0/1:21:8,13:8:288:13:468:-36.138,0,-19.9458	0/1:21:9,12:9:324:12:428:-32.5038,0,-23.1842	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4695	0/1:15:6,9:6:207:9:320:-24.6269,0,-14.4514	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/1:22:8,14:8:288:14:500:-38.7135,0,-19.6424	0/0:22:22,0:22:779:0:0:0,-6.62266,-70.4321	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/0:179:179,0:179:6399:0:0:0,-53.8844,-575.985	0/0:79:79,0:79:2811:0:0:0,-23.7814,-253.226	0/0:72:72,0:72:2552:0:0:0,-21.6742,-229.929	0/0:61:61,0:61:2146:0:0:0,-18.3628,-193.404	0/0:47:47,0:47:1670:0:0:0,-14.1484,-150.586	0/0:53:53,0:53:1891:0:0:0,-15.9546,-170.468	0/0:94:94,0:94:3332:0:0:0,-28.2968,-300.091	0/0:61:61,0:61:2154:0:0:0,-18.3628,-194.127	0/0:155:154,0:154:5528:0:0:0,-46.3586,-497.284	0/1:38:19,19:19:676:19:668:-48.9927,0,-49.7289	0/1:23:7,16:7:252:16:572:-44.8897,0,-16.1053	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.7354	0/0:15:14,1:14:486:1:36:0,-0.917175,-40.4697	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2381	0/1:31:10,21:10:351:21:756:-59.0215,0,-22.5947	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:30:13,17:13:468:17:612:-46.3825,0,-33.4287	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:21:20,1:20:716:1:36:0,-2.72335,-61.1694	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.1676	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:41:40,1:40:1428:1:36:0,-8.74395,-125.219	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:125:65,60:65:2332:60:2139:-155.117,0,-172.511	0/1:8:4,4:4:136:4:144:-10.9054,0,-10.1673	0/0:199:199,0:199:7116:0:0:0,-59.905,-640.497	0/0:20:19,1:19:667:1:36:0,-2.42232,-56.7564	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:154:154,0:154:5511:0:0:0,-46.3586,-496.116	0/0:29:28,1:28:991:1:32:0,-5.53056,-86.3042	0/0:62:62,0:62:2215:0:0:0,-18.6639,-199.614	0/1:61:34,27:34:1220:27:950:-67.45,0,-91.7436	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/0:17:17,0:17:592:0:0:0,-5.11751,-53.6064	0/0:22:22,0:22:776:0:0:0,-6.62266,-70.1622	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:25:13,12:13:464:12:427:-31.2389,0,-34.5718	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:20:20,0:20:699:0:0:0,-6.0206,-63.2325	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.934	0/0:56:55,1:55:1959:1:36:0,-13.2594,-172.987	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:79:39,40:39:1385:40:1419:-104.193,0,-101.165	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/1:26:14,12:14:496:12:428:-31.032,0,-37.1475	0/0:12:11,1:11:392:1:36:0,-0.0140849,-32.0218	0/1:9:1,8:1:36:8:284:-23.1941,0,-0.889005	0/1:23:6,17:6:212:17:608:-48.1283,0,-12.5011	0/1:14:3,11:3:108:11:377:-30.0297,0,-5.86075	0/0:174:173,1:173:6138:1:36:0,-48.7809,-548.924	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:87:42,45:42:1499:45:1576:-115.907,0,-109.014	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.45	0/1:4:1,3:1:36:3:98:-7.93731,0,-2.39415	0/1:22:14,8:14:495:8:288:-19.6447,0,-38.2604	0/1:47:27,20:27:959:20:720:-50.962,0,-72.477	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:13:7,6:7:252:6:212:-15.4935,0,-19.1156	0/1:28:16,12:16:572:12:432:-30.7924,0,-43.3846	0/0:26:24,2:24:855:2:72:0,-0.990057,-70.4335	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.233	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:84:84,0:84:2987:0:0:0,-25.2865,-269.063	0/0:53:53,0:53:1899:0:0:0,-15.9546,-171.187	0/0:82:82,0:82:2929:0:0:0,-24.6845,-263.843	0/0:114:114,0:114:4034:0:0:0,-34.3174,-363.16	0/0:39:39,0:39:1375:0:0:0,-11.7402,-124.048	0/0:82:82,0:82:2900:0:0:0,-24.6845,-261.236	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/0:234:234,0:234:8388:0:0:0,-70.441,-754.923	0/1:180:150,30:150:5345:30:1068:-42.2385,0,-426.998	0/1:51:17,34:17:603:34:1220:-94.7543,0,-39.247	0/0:82:81,1:81:2867:1:36:0,-21.0862,-254.668	0/0:104:104,0:104:3709:0:0:0,-31.3071,-334.011
chr12	17645085	.	A	G	10786.3	PASS	AB=0.472795;ABP=9.86286;AC=32;AF=0.170213;AN=188;AO=518;CIGAR=1X;DP=4437;DPB=4437;DPRA=0.592437;EPP=3.61395;EPPR=341.935;GTI=1;LEN=1;MEANALT=1.02381;MQM=59.61;MQMR=59.9791;NS=94;NUMALT=1;ODDS=2.58096;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=18397;QR=140247;RO=3918;RPL=518;RPP=1127.83;RPPR=8441.49;RPR=0;RUN=1;SAF=265;SAP=3.61395;SAR=253;SRF=1562;SRP=352.417;SRR=2356;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:18:8,10:8:288:10:360:-27.308,0,-20.8489	0/1:23:8,15:8:288:15:525:-40.6544,0,-19.3437	0/1:19:9,10:9:324:10:352:-26.2829,0,-23.7863	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.117	0/1:16:6,10:6:216:10:356:-27.5648,0,-14.974	0/1:5:1,4:1:27:4:144:-11.8085,0,-1.19463	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:26:11,15:11:396:15:514:-38.757,0,-28.1536	0/0:23:23,0:23:816:0:0:0,-6.92369,-73.7617	0/0:16:16,0:16:555:0:0:0,-4.81648,-50.276	0/0:173:173,0:173:6185:0:0:0,-52.0782,-556.733	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.64	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.558	0/0:96:96,0:96:3440:0:0:0,-28.8989,-309.795	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/0:153:153,0:153:5488:0:0:0,-46.0576,-494.046	0/1:39:19,20:19:684:20:711:-52.5617,0,-50.1502	0/1:24:8,16:8:284:16:546:-42.2345,0,-18.6786	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:15:14,1:14:504:1:36:0,-0.917175,-42.0998	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:30:9,21:9:324:21:750:-58.7724,0,-20.475	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:31:13,18:13:468:18:644:-48.9587,0,-33.1277	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:21:20,1:20:712:1:36:0,-2.72335,-60.8084	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2902	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:42:41,1:41:1468:1:36:0,-9.04498,-128.818	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6453	0/1:128:70,58:70:2495:58:2075:-148.474,0,-186.271	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/0:198:198,0:198:7081:0:0:0,-59.6039,-637.349	0/0:20:19,1:19:680:1:32:0,-2.82129,-58.3298	0/0:24:23,1:23:828:1:36:0,-3.62644,-71.2458	0/0:154:154,0:154:5520:0:0:0,-46.3586,-496.925	0/0:31:30,1:30:1061:1:36:0,-5.73365,-92.2011	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/1:61:33,28:33:1167:28:999:-71.8571,0,-86.9732	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:15:15,0:15:522:0:0:0,-4.51545,-47.3073	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:25:13,12:13:464:12:432:-31.6908,0,-34.5718	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:10:10,0:10:352:0:0:0,-3.0103,-32.0182	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.093	0/0:53:52,1:52:1860:1:36:0,-12.3563,-164.081	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:80:39,41:39:1404:41:1455:-107.131,0,-102.577	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/1:26:14,12:14:504:12:424:-30.6696,0,-37.8713	0/0:13:12,1:12:432:1:36:0,-0.315115,-35.6229	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:24:6,18:6:216:18:648:-51.4272,0,-12.5658	0/1:14:3,11:3:108:11:396:-31.7545,0,-5.86075	0/0:168:168,0:168:5979:0:0:0,-50.573,-538.218	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:85:42,43:42:1508:43:1540:-113.267,0,-110.427	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:4:1,3:1:36:3:95:-7.65775,0,-2.39415	0/1:22:14,8:14:504:8:288:-19.6447,0,-39.0754	0/1:48:28,20:28:1008:20:720:-50.6609,0,-76.5869	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:13:7,6:7:252:6:207:-15.0356,0,-19.1156	0/1:30:16,14:16:576:14:504:-36.6672,0,-43.1441	0/0:27:25,2:25:896:2:72:0,-1.29109,-74.1236	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.434	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.035	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:115:115,0:115:4119:0:0:0,-34.6184,-370.894	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:63:62,1:62:2200:1:36:0,-15.3666,-194.665	0/0:231:231,0:231:8268:0:0:0,-69.5379,-744.13	0/1:180:149,31:149:5347:31:1085:-43.7713,0,-427.175	0/1:51:17,34:17:603:34:1195:-92.502,0,-39.247	0/0:59:57,1:57:2035:1:36:0,-14.2213,-179.823	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.193
chr12	17693258	.	AGC	AGA,TGA	158732	PASS	AB=0.505014,0.491086;ABP=3.79421,5.48784;AC=152,36;AF=0.808511,0.191489;AN=188;AO=5643,1773;CIGAR=2M1X,1X1M1X;DP=7443;DPB=7443;DPRA=40.0054,1.83682;EPP=12092.2,3827.02;EPPR=9.52472;GTI=3;LEN=1,3;MEANALT=1.63441,2.3;MQM=59.9716,54.7473;MQMR=60;NS=94;NUMALT=2;ODDS=0.657147;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=200680,61767;QR=79;RO=3;RPL=5624,1770;RPP=12092.2,3827.02;RPPR=9.52472;RPR=19,3;RUN=1,1;SAF=0,0;SAP=12256.6,3853.03;SAR=5643,1773;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:16:0,6,10:0:0:6,10:212,353:-46.2852,-29.0193,-27.2131,-17.6186,0,-14.6083	1/2:92:0,41,50:0:0:41,50:1468,1717:-258.258,-138.535,-126.192,-119.753,0,-104.702	1/2:97:0,62,32:0:0:62,32:2220,1119:-271.678,-90.6279,-71.964,-181.076,0,-171.443	1/1:196:0,196,0:0:0:196,0:6977,0:-627.994,-59.0019,0,-627.994,-59.0019,-627.994	1/2:76:0,43,33:0:0:43,33:1536,1164:-220.223,-94.9969,-82.0526,-125.581,0,-115.647	1/2:77:0,53,24:0:0:53,24:1900,860:-225.082,-70.1152,-54.1606,-155.323,0,-148.099	1/1:110:0,109,0:0:0:109,0:3870,0:-348.078,-32.8123,0,-348.078,-32.8123,-348.078	1/2:143:0,76,67:0:0:76,67:2659,2338:-405.69,-189.364,-166.486,-216.674,0,-196.505	1/1:89:0,89,0:0:0:89,0:3192,0:-287.503,-26.7917,0,-287.503,-26.7917,-287.503	1/1:68:0,68,0:0:0:68,0:2440,0:-219.855,-20.47,0,-219.855,-20.47,-219.855	1/1:14:0,14,0:0:0:14,0:500,0:-45.3362,-4.21442,0,-45.3362,-4.21442,-45.3362	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/1:32:1,31,0:1:25:31,0:1104,0:-97.1708,-7.1331,0,-97.4718,-9.33193,-99.4173	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:23:0,23,0:0:0:23,0:824,0:-74.4833,-6.92369,0,-74.4833,-6.92369,-74.4833	1/1:11:0,11,0:0:0:11,0:388,0:-35.2574,-3.31133,0,-35.2574,-3.31133,-35.2574	1/1:21:0,21,0:0:0:21,0:756,0:-68.1766,-6.32163,0,-68.1766,-6.32163,-68.1766	1/1:15:0,15,0:0:0:15,0:536,0:-48.5748,-4.51545,0,-48.5748,-4.51545,-48.5748	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:247:0,107,140:0:0:107,140:3794,4878:-705.491,-396.395,-364.185,-309.448,0,-267.303	1/2:90:0,41,49:0:0:41,49:1453,1731:-259.331,-140.963,-128.621,-118.722,0,-103.971	1/2:157:0,52,103:0:0:52,103:1868,3541:-439.69,-287.298,-271.644,-152.458,0,-121.452	1/1:74:0,74,0:0:0:74,0:2609,0:-235.058,-22.2762,0,-235.058,-22.2762,-235.058	1/1:64:0,64,0:0:0:64,0:2293,0:-206.631,-19.2659,0,-206.631,-19.2659,-206.631	1/1:69:0,69,0:0:0:69,0:2457,0:-221.384,-20.7711,0,-221.384,-20.7711,-221.384	1/2:317:0,148,167:0:0:148,167:5204,5825:-896.865,-473.265,-428.712,-423.63,0,-373.358	1/1:156:0,155,0:0:0:155,0:5487,0:-493.599,-46.6597,0,-493.599,-46.6597,-493.599	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:276:0,144,132:0:0:144,132:5070,4639:-790.406,-377.67,-334.322,-413.087,0,-373.351	1/2:132:0,83,49:0:0:83,49:2980,1693:-379.978,-136.881,-111.895,-243.446,0,-228.696	1/1:78:0,78,0:0:0:78,0:2796,0:-251.88,-23.4803,0,-251.88,-23.4803,-251.88	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:11:0,6,5:0:0:6,5:212,172:-31.5599,-14.2891,-12.4829,-17.6186,0,-16.1135	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:8:0,7,1:0:0:7,1:248,36:-23.4869,-3.2882,-1.18099,-20.557,0,-20.256	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:63:0,30,33:0:0:30,33:1049,1132:-177.543,-92.2024,-83.1715,-85.6873,0,-75.7533	1/2:230:0,128,101:0:0:128,101:4569,3510:-656.517,-284.025,-245.493,-372.484,0,-342.079	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	1/2:7:0,5,2:0:0:5,2:176,72:-20.5477,-6.22497,-4.71982,-14.6799,0,-14.0778	1/1:176:0,175,1:0:0:175,1:6182,21:-556.271,-52.6803,0,-554.683,-50.8813,-554.382	1/1:18:0,18,0:0:0:18,0:648,0:-58.6519,-5.41854,0,-58.6519,-5.41854,-58.6519	1/1:161:0,157,2:0:0:157,2:5578,70:-501.79,-47.2617,0,-496.104,-41.5813,-495.502	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/2:17:0,10,7:0:0:10,7:352,248:-49.1899,-20.535,-17.5247,-29.0079,0,-26.9007	1/2:117:0,63,54:0:0:63,54:2218,1900:-335.432,-154.867,-135.902,-180.917,0,-164.661	1/1:121:1,119,0:1:27:119,0:4233,0:-378.421,-33.7238,0,-378.722,-35.8226,-380.85	1/1:194:0,190,0:0:0:190,0:6703,0:-602.992,-57.1957,0,-602.992,-57.1957,-602.992	1/1:127:0,126,1:0:0:126,1:4457,36:-400.945,-37.9298,0,-398.007,-34.6325,-397.706	1/1:89:0,89,0:0:0:89,0:3143,0:-283.093,-26.7917,0,-283.093,-26.7917,-283.093	1/2:174:0,70,102:0:0:70,102:2466,3592:-492.669,-291.901,-270.829,-200.77,0,-170.065	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:124:0,124,0:0:0:124,0:4414,0:-397.431,-37.3277,0,-397.431,-37.3277,-397.431	1/1:50:0,50,0:0:0:50,0:1781,0:-160.464,-15.0515,0,-160.464,-15.0515,-160.464	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:124:0,124,0:0:0:124,0:4428,0:-398.692,-37.3277,0,-398.692,-37.3277,-398.692	1/1:42:0,42,0:0:0:42,0:1466,0:-132.23,-12.6433,0,-132.23,-12.6433,-132.2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chr12	17693268	.	A	G	29171	PASS	AB=0.483933;ABP=11.1743;AC=36;AF=0.191489;AN=188;AO=1770;CIGAR=1X;DP=7599;DPB=7599;DPRA=1.67639;EPP=3846.52;EPPR=12660.5;GTI=6;LEN=1;MEANALT=1;MQM=54.7994;MQMR=59.966;NS=94;NUMALT=1;ODDS=0.00162141;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=63363;QR=209284;RO=5829;RPL=1770;RPP=3846.52;RPPR=12660.5;RPR=0;RUN=1;SAF=0;SAP=3846.52;SAR=1770;SRF=0;SRP=12660.5;SRR=5829;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:6,10:6:216:10:352:-27.1236,0,-14.974	0/1:93:43,50:43:1544:50:1776:-131.17,0,-111.257	0/1:100:68,32:68:2435:32:1148:-72.916,0,-189.302	0/0:200:200,0:200:7185:0:0:0,-60.206,-646.698	0/1:76:44,32:44:1576:32:1152:-80.9621,0,-119.245	0/1:81:57,24:57:2052:24:856:-52.5994,0,-160.568	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.272	0/1:145:78,67:78:2804:67:2400:-171.323,0,-208.942	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.515	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.1766	0/0:15:15,0:15:525:0:0:0,-4.51545,-47.5781	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:252:111,141:111:3992:141:5056:-378.624,0,-283.609	0/1:93:44,49:44:1584:49:1756:-130.059,0,-114.856	0/1:157:52,105:52:1872:105:3738:-288.96,0,-121.497	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/1:324:154,170:154:5532:170:6096:-450.698,0,-400.469	0/0:160:160,0:160:5744:0:0:0,-48.1648,-517.074	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:276:146,130:146:5248:130:4676:-337.694,0,-389.342	0/1:137:88,49:88:3152:49:1760:-116.373,0,-242.664	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:11:6,5:6:216:5:180:-13.2136,0,-16.4792	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:8:7,1:7:252:1:36:-1.18099,0,-20.6207	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:63:31,32:31:1116:32:1131:-83.102,0,-81.7868	0/1:232:133,99:133:4780:99:3531:-246.862,0,-360.516	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:7:5,2:5:176:2:72:-4.71982,0,-14.0778	0/0:185:185,0:185:6644:0:0:0,-55.6905,-598.035	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:163:161,2:161:5762:2:72:0,-42.2446,-511.868	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:16:10,6:10:356:6:208:-14.2265,0,-27.5648	0/1:124:67,57:67:2396:57:2040:-145.077,0,-178.569	0/0:124:124,0:124:4460:0:0:0,-37.3277,-401.568	0/0:201:201,0:201:7228:0:0:0,-60.507,-650.569	0/0:130:130,0:130:4676:0:0:0,-39.1339,-420.999	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.222	0/1:171:67,104:67:2408:104:3724:-283.089,0,-165.5	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:128:128,0:128:4588:0:0:0,-38.5318,-413.084	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.505	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:127:127,0:127:4568:0:0:0,-38.2308,-411.278	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:82:82,0:82:2937:0:0:0,-24.6845,-264.562	0/1:58:31,27:31:1112:27:968:-69.9157,0,-82.9316	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:194:194,0:194:6980:0:0:0,-58.3998,-628.259	0/1:168:90,78:90:3228:78:2796:-200.652,0,-240.169	0/0:36:33,3:33:1188:3:108:0,-0.786122,-97.1776	0/1:94:54,40:54:1935:40:1432:-100.659,0,-146.129	0/1:184:102,82:102:3664:82:2936:-208.789,0,-274.573	0/1:140:41,99:41:1472:99:3548:-276.494,0,-90.6319	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:71:53,18:53:1893:18:640:-36.3988,0,-149.273	0/1:54:26,28:26:936:28:1004:-74.3124,0,-68.3038	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/1:115:61,54:61:2183:54:1933:-138.025,0,-161.919	0/1:33:21,12:21:756:12:432:-29.1886,0,-58.4332	0/1:123:64,59:64:2300:59:2120:-153.599,0,-170.234	0/0:202:201,1:201:7219:1:36:0,-57.2124,-646.16	0/1:111:59,52:59:2097:52:1859:-133.7,0,-155.584	0/1:65:40,25:40:1436:25:900:-61.3751,0,-109.971	1/1:2:0,2:0:0:2:72:-6.81953,-0.60206,0	0/0:100:100,0:100:3596:0:0:0,-30.103,-323.845	0/0:151:151,0:151:5415:0:0:0,-45.4555,-487.47	0/0:244:244,0:244:8753:0:0:0,-73.4513,-787.743	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:21:21,0:21:756:0:0:0,-6.32163,-68.3672	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/1:23:10,13:10:360:13:468:-35.4742,0,-25.8206	0/1:20:10,10:10:360:10:351:-25.8822,0,-26.7237	0/0:136:136,0:136:4892:0:0:0,-40.9401,-440.343	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.194
chr12	17880189	.	CGGGG	CGGGA,TGGGA	109209	PASS	AB=0.568455,0.428743;ABP=104.685,113.18;AC=149,37;AF=0.801075,0.198925;AN=186;AO=5183,1081;CIGAR=4M1X,1X3M1X;DP=6286;DPB=6286;DPRA=34.1522,1.2066;EPP=11257.8,2350.37;EPPR=5.18177;GTI=7;LEN=1,5;MEANALT=1.65217,2.15;MQM=35.2855,24.136;MQMR=50;NS=93;NUMALT=2;ODDS=0.154845;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=185747,38229;QR=31;RO=1;RPL=0,0;RPP=11257.8,2350.37;RPPR=5.18177;RPR=5183,1081;RUN=1,1;SAF=5183,1081;SAP=11257.8,2350.37;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,23,12:0:0:23,12:824,420:-75.5505,-19.0092,-12.0855,-56.7827,0,-53.1704	1/2:53:0,28,25:0:0:28,25:1000,874:-107.77,-39.476,-31.0472,-68.5471,0,-61.0214	1/2:78:0,47,31:0:0:47,31:1673,1108:-163.847,-49.0646,-34.9162,-115.029,0,-105.697	1/1:215:0,214,0:0:0:214,0:7654,0:-629.037,-64.4204,0,-629.037,-64.4204,-629.037	1/2:50:0,36,14:0:0:36,14:1296,504:-117.843,-24.7272,-13.8901,-93.3692,0,-89.1548	1/2:38:0,24,14:0:0:24,14:860,502:-80.5368,-22.279,-15.0543,-58.5011,0,-54.2867	1/1:56:0,55,0:0:0:55,0:1964,0:-162.866,-16.5567,0,-162.866,-16.5567,-162.866	1/2:85:0,59,26:0:0:59,26:2101,923:-183.044,-41.142,-23.3812,-142.138,0,-134.312	1/1:67:0,67,0:0:0:67,0:2404,0:-184.751,-20.169,0,-184.751,-20.169,-184.751	1/1:45:0,45,0:0:0:45,0:1612,0:-131.826,-13.5464,0,-131.826,-13.5464,-131.826	1/1:37:0,37,0:0:0:37,0:1328,0:-110.607,-11.1381,0,-110.607,-11.1381,-110.607	1/1:50:0,50,0:0:0:50,0:1796,0:-138.192,-15.0515,0,-138.192,-15.0515,-138.192	1/1:45:0,45,0:0:0:45,0:1616,0:-119.242,-13.5464,0,-119.242,-13.5464,-119.242	1/1:35:0,35,0:0:0:35,0:1260,0:-100.975,-10.5361,0,-100.975,-10.5361,-100.975	1/1:64:0,64,0:0:0:64,0:2300,0:-189.603,-19.2659,0,-189.603,-19.2659,-189.603	1/1:35:0,35,0:0:0:35,0:1256,0:-100.631,-10.5361,0,-100.631,-10.5361,-100.631	1/1:29:0,29,0:0:0:29,0:1044,0:-80.7536,-8.72987,0,-80.7536,-8.72987,-80.7536	1/1:21:0,21,0:0:0:21,0:756,0:-56.9402,-6.32163,0,-56.9402,-6.32163,-56.9402	1/1:20:0,20,0:0:0:20,0:720,0:-56.4085,-6.0206,0,-56.4085,-6.0206,-56.4085	1/2:44:0,28,16:0:0:28,16:993,563:-105.577,-30.7602,-22.3314,-75.093,0,-70.2765	1/2:123:0,56,66:0:0:56,66:2012,2318:-258.947,-114.826,-97.9681,-144.169,0,-124.301	1/2:42:0,17,25:0:0:17,25:612,892:-98.7464,-51.6102,-46.4927,-47.4452,0,-39.9195	1/1:120:0,118,2:0:0:118,2:4240,72:-350.661,-35.5215,0,-346.824,-31.4365,-346.222	1/1:71:0,68,3:0:0:68,3:2436,108:-193.266,-20.47,0,-188.02,-14.9923,-187.116	1/1:40:0,40,0:0:0:40,0:1440,0:-115.981,-12.0412,0,-115.981,-12.0412,-115.981	1/2:166:0,119,46:0:0:119,46:4264,1639:-417.683,-95.3779,-59.5553,-322.324,0,-308.476	1/1:156:0,155,0:0:0:155,0:5564,0:-446.357,-46.6597,0,-446.357,-46.6597,-446.357	1/1:23:0,23,0:0:0:23,0:824,0:-67.3189,-6.92369,0,-67.3189,-6.92369,-67.3189	1/2:168:0,98,69:0:0:98,69:3516,2459:-411.023,-142.051,-112.55,-269.013,0,-248.242	1/2:114:0,66,48:0:0:66,48:2364,1688:-253.241,-83.7533,-63.8854,-169.753,0,-155.304	1/1:80:0,80,0:0:0:80,0:2872,0:-236.74,-24.0824,0,-236.74,-24.0824,-236.74	2/2:2:0,0,2:0:0:0,2:0,72:-4.32984,-4.32984,-4.32984,-0.60206,-0.60206,0	1/2:15:0,6,9:0:0:6,9:216,324:-31.7392,-15.9774,-14.1712,-16.0477,0,-13.3384	1/1:6:0,6,0:0:0:6,0:216,0:-17.18,-1.80618,0,-17.18,-1.80618,-17.18	.:.:.:.:.:.:.:.	1/2:6:0,5,1:0:0:5,1:180,36:-14.4232,-1.78555,-0.280405,-12.8636,0,-12.5626	1/2:119:0,55,63:0:0:55,63:1980,2212:-280.053,-128.557,-112,-151.533,0,-132.568	1/2:71:0,55,16:0:0:55,16:1964,568:-170.593,-28.1742,-11.6175,-142.667,0,-137.851	1/1:16:0,16,0:0:0:16,0:576,0:-45.532,-4.81648,0,-45.532,-4.81648,-45.532	1/1:5:0,5,0:0:0:5,0:180,0:-14.9323,-1.50515,0,-14.9323,-1.50515,-14.9323	1/1:96:0,96,0:0:0:96,0:3433,0:-273.566,-28.8989,0,-273.566,-28.8989,-273.566	1/1:19:0,19,0:0:0:19,0:678,0:-54.4844,-5.71957,0,-54.4844,-5.71957,-54.4844	1/1:168:0,167,0:0:0:167,0:5977,0:-479.239,-50.272,0,-479.239,-50.272,-479.239	1/1:16:0,16,0:0:0:16,0:576,0:-48.5191,-4.81648,0,-48.5191,-4.81648,-48.5191	1/2:35:0,13,22:0:0:13,22:464,782:-75.8036,-42.3615,-38.4481,-33.7341,0,-27.1114	1/2:64:0,39,25:0:0:39,25:1389,887:-158.76,-51.5518,-39.8117,-107.5,0,-99.9742	1/1:128:0,127,1:0:0:127,1:4526,36:-350.414,-38.2308,0,-348.838,-36.4453,-348.537	1/1:148:0,147,0:0:0:147,0:5261,0:-434.303,-44.2514,0,-434.303,-44.2514,-434.303	1/1:114:0,113,0:0:0:113,0:4048,0:-335.623,-34.0164,0,-335.623,-34.0164,-335.623	1/1:82:0,81,0:0:0:81,0:2916,0:-240.513,-24.3834,0,-240.513,-24.3834,-240.513	1/2:92:0,55,37:0:0:55,37:1964,1299:-227.993,-76.4397,-59.8831,-151.847,0,-140.709	1/1:2:0,2,0:0:0:2,0:72,0:-6.35768,-0.60206,0,-6.35768,-0.60206,-6.35768	1/1:120:0,120,0:0:0:120,0:4300,0:-329.781,-36.1236,0,-329.781,-36.1236,-329.781	1/1:65:0,65,0:0:0:65,0:2328,0:-198.407,-19.567,0,-198.407,-19.567,-198.407	1/2:8:0,6,2:0:0:6,2:212,72:-18.3398,-3.36245,-1.55627,-15.2112,0,-14.6091	1/1:64:0,64,0:0:0:64,0:2284,0:-185.635,-19.2659,0,-185.635,-19.2659,-185.635	1/1:48:0,48,0:0:0:48,0:1724,0:-142.882,-14.4494,0,-142.882,-14.4494,-142.882	1/1:2:0,2,0:0:0:2,0:72,0:-5.76859,-0.60206,0,-5.76859,-0.60206,-5.76859	1/1:10:0,8,0:0: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chr12	17942990	.	C	T	60699	PASS	AB=0.336034;ABP=2567.97;AC=39;AF=0.207447;AN=188;AO=3718;CIGAR=1X;DP=19923;DPB=19923;DPRA=1.98025;EPP=8067.86;EPPR=35144;GTI=2;LEN=1;MEANALT=1.06383;MQM=35.755;MQMR=39.0421;NS=94;NUMALT=1;ODDS=0.851572;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=132390;QR=577540;RO=16199;RPL=1994;RPP=45.587;RPPR=18.9656;RPR=1724;RUN=1;SAF=1995;SAP=46.2201;SAR=1723;SRF=8276;SRP=19.7141;SRR=7923;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:72:46,26:46:1610:26:913:-52.1967,0,-115.861	0/1:321:212,109:212:7544:109:3872:-198.703,0,-530.863	0/1:350:223,127:223:7900:127:4533:-259.63,0,-570.761	0/0:366:365,1:365:13018:1:36:0,-107.274,-1028.63	0/1:180:121,59:121:4291:59:2112:-112.064,0,-307.589	0/1:156:104,52:104:3707:52:1856:-102.17,0,-272.704	0/0:167:167,0:167:5956:0:0:0,-50.272,-454.59	0/1:505:344,160:344:12284:160:5712:-297.527,0,-876.931	0/0:155:155,0:155:5544:0:0:0,-46.6596,-457.197	0/0:212:212,0:212:7596:0:0:0,-63.8184,-585.516	0/0:109:109,0:109:3879:0:0:0,-32.8123,-320.129	0/0:154:154,0:154:5451:0:0:0,-46.3586,-443.635	0/0:108:107,0:107:3772:0:0:0,-32.2102,-305.864	0/0:90:90,0:90:3232:0:0:0,-27.0927,-253.446	0/0:130:130,0:130:4655:0:0:0,-39.1339,-374.042	0/0:90:90,0:90:3212:0:0:0,-27.0927,-260.954	0/0:81:81,0:81:2903:0:0:0,-24.3834,-224.976	0/0:81:81,0:81:2890:0:0:0,-24.3834,-221.686	0/0:70:70,0:70:2512:0:0:0,-21.0721,-201.153	0/1:592:410,182:410:14625:182:6501:-354.585,0,-1073.09	0/1:448:283,165:283:10098:165:5903:-344.399,0,-729.836	0/1:232:121,111:121:4328:111:3955:-256.606,0,-303.674	0/0:232:232,0:232:8316:0:0:0,-69.839,-679.131	0/0:280:267,13:267:9556:13:464:0,-48.8778,-720.589	0/0:138:138,0:138:4915:0:0:0,-41.5421,-394.776	0/1:770:489,281:489:17417:281:10000:-576.986,0,-1238.84	0/0:414:412,2:412:14715:2:72:0,-118.587,-1164.84	0/0:89:89,0:89:3158:0:0:0,-26.7917,-251.717	0/1:682:481,200:481:17208:200:7117:-378.104,0,-1261.09	0/1:308:203,105:203:7259:105:3756:-202.934,0,-523.756	0/0:192:191,0:191:6824:0:0:0,-57.4967,-559.995	0/1:11:8,3:8:288:3:108:-6.36124,0,-21.992	0/1:34:24,10:24:856:10:356:-20.2575,0,-65.0036	0/0:10:10,0:10:345:0:0:0,-3.0103,-27.9326	0/1:26:12,14:12:428:14:500:-33.4572,0,-30.1873	0/1:63:29,34:29:1032:34:1196:-82.1666,0,-70.8948	0/1:610:399,211:399:14182:211:7515:-413.19,0,-1016.29	0/1:249:182,67:182:6507:67:2373:-114.102,0,-471.609	0/0:78:78,0:78:2787:0:0:0,-23.4803,-224.716	0/1:16:7,9:7:252:9:320:-21.7122,0,-16.7674	0/0:283:282,1:282:10053:1:36:0,-82.2887,-789.452	0/0:42:42,0:42:1487:0:0:0,-12.6433,-122.096	0/0:325:325,0:325:11597:0:0:0,-97.8347,-937.21	0/0:173:173,0:173:6112:0:0:0,-52.0782,-478.041	0/1:220:154,66:154:5515:66:2356:-118.639,0,-393.952	0/1:251:168,83:168:5934:83:2963:-171.403,0,-434.622	0/0:206:206,0:206:7379:0:0:0,-62.0122,-604.76	0/0:290:290,0:290:10311:0:0:0,-87.2987,-814.237	0/0:178:178,0:178:6360:0:0:0,-53.5833,-501.376	0/0:194:194,0:194:6917:0:0:0,-58.3998,-546.478	0/1:418:283,135:283:10126:135:4757:-248.082,0,-724.77	0/0:27:27,0:27:972:0:0:0,-8.12781,-84.8664	0/0:281:280,1:280:9990:1:36:0,-81.6867,-788.186	0/0:57:57,0:57:2044:0:0:0,-17.1587,-168.728	0/1:11:7,4:7:248:4:144:-9.22279,0,-17.9278	0/0:234:234,0:234:8337:0:0:0,-70.441,-689.782	0/0:87:86,0:86:3064:0:0:0,-25.8886,-252.408	0/1:33:29,4:29:1017:4:144:-3.14967,0,-78.5612	0/0:7:7,0:7:248:0:0:0,-2.10721,-20.1225	0/0:154:154,0:154:5468:0:0:0,-46.3586,-436.472	0/1:258:169,89:169:6011:89:3188:-166.087,0,-418.419	0/0:16:16,0:16:576:0:0:0,-4.81648,-50.8057	0/0:369:369,0:369:13148:0:0:0,-111.08,-1077.45	0/1:531:345,186:345:12349:186:6619:-365.823,0,-873.841	0/0:129:122,7:122:4353:7:244:0,-18.786,-337.078	0/1:261:179,82:179:6373:82:2932:-159.346,0,-453.47	0/1:565:386,178:386:13730:178:6358:-352.222,0,-1001.47	0/1:359:230,129:230:8224:129:4590:-270.48,0,-601.195	0/0:61:61,0:61:2145:0:0:0,-18.3628,-184.271	0/1:204:138,66:138:4956:66:2372:-122.39,0,-355.565	0/1:217:144,73:144:5112:73:2565:-136.352,0,-362.329	0/0:31:31,0:31:1095:0:0:0,-9.33193,-93.6226	0/1:205:127,78:127:4503:78:2776:-160.489,0,-312.935	0/1:183:135,48:135:4844:48:1701:-83.8822,0,-365.233	0/1:445:283,162:283:10076:162:5759:-333.389,0,-721.179	0/0:224:224,0:224:7998:0:0:0,-67.4307,-643.262	0/1:286:209,77:209:7456:77:2728:-131.823,0,-539.465	0/1:395:286,109:286:10175:109:3884:-187.819,0,-732.448	0/1:27:18,9:18:644:9:324:-18.767,0,-49.2398	0/0:232:231,1:231:8236:1:36:0,-66.9362,-650.605	0/0:165:165,0:165:5895:0:0:0,-49.6699,-480.324	0/0:302:302,0:302:10797:0:0:0,-90.9111,-843.337	0/0:157:157,0:157:5553:0:0:0,-47.2617,-430.088	0/0:127:127,0:127:4521:0:0:0,-38.2308,-358.538	0/0:131:131,0:131:4667:0:0:0,-39.4349,-362.52	0/0:269:268,1:268:9512:1:36:0,-77.6309,-746.03	0/0:46:46,0:46:1635:0:0:0,-13.8474,-125.85	0/0:111:111,0:111:3939:0:0:0,-33.4143,-317.049	0/0:134:134,0:134:4751:0:0:0,-40.338,-389.621	0/0:60:60,0:60:2152:0:0:0,-18.0618,-177.863	0/1:168:103,65:103:3656:65:2312:-138.089,0,-266.122	0/1:322:199,123:199:7075:123:4360:-255.063,0,-515.719	0/0:358:358,0:358:12844:0:0:0,-107.769,-1022.24	0/0:233:233,0:233:8308:0:0:0,-70.14,-648.22
chr12	17943014	.	T	A	282216	PASS	AB=0.338427;ABP=2629.48;AC=147;AF=0.781915;AN=188;AO=12500;CIGAR=1X;DP=20181;DPB=20181;DPRA=0;EPP=26003.5;EPPR=15958.1;GTI=15;LEN=1;MEANALT=1.05319;MQM=36.1171;MQMR=42.0737;NS=94;NUMALT=1;ODDS=1.27371;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=444622;QR=273381;RO=7676;RPL=6429;RPP=25.2747;RPPR=46.038;RPR=6071;RUN=1;SAF=6296;SAP=4.48065;SAR=6204;SRF=3950;SRP=17.2046;SRR=3726;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:74:53,21:53:1895:21:748:-37.7885,0,-138.491	0/1:325:213,112:213:7571:112:3983:-213.172,0,-523.694	0/1:356:242,114:242:8609:114:3990:-221.555,0,-617.297	1/1:362:0,362:0:0:362:12867:-1015.57,-108.973,0	0/1:180:120,60:120:4287:60:2133:-115.647,0,-305.489	0/1:159:121,38:121:4310:38:1368:-65,0,-317.142	1/1:171:0,171:0:0:171:6011:-458.469,-51.4761,0	0/1:517:338,179:338:12038:179:6362:-347.04,0,-848.298	1/1:161:0,161:0:0:161:5688:-470.467,-48.4658,0	1/1:214:0,214:0:0:214:7623:-585.642,-64.4204,0	1/1:107:0,107:0:0:107:3823:-314.207,-32.2102,0	1/1:152:0,152:0:0:152:5411:-439.59,-45.7566,0	1/1:108:1,107:1:36:107:3821:-304.25,-28.913,0	1/1:92:0,92:0:0:92:3292:-258.827,-27.6948,0	1/1:131:0,131:0:0:131:4678:-376.627,-39.4349,0	1/1:89:0,89:0:0:89:3166:-256.834,-26.7917,0	1/1:82:0,82:0:0:82:2928:-226.302,-24.6845,0	1/1:80:0,80:0:0:80:2864:-219.019,-24.0824,0	1/1:70:0,70:0:0:70:2504:-200.766,-21.0721,0	0/1:592:370,222:370:13184:222:7866:-473.143,0,-948.853	0/1:451:314,137:314:11162:137:4840:-262.46,0,-807.605	0/1:234:197,37:197:6982:37:1315:-34.6177,0,-521.952	1/1:238:0,238:0:0:238:8419:-687.012,-71.6451,0	0/1:282:33,249:33:1188:249:8846:-609.079,0,-13.9707	1/1:137:1,136:1:36:136:4846:-384.722,-37.7604,0	0/1:788:540,248:540:19295:248:8837:-469.898,0,-1387.3	1/1:417:2,415:2:72:415:14743:-1165.94,-119.49,0	1/1:91:0,91:0:0:91:3251:-258.169,-27.3937,0	0/1:694:456,237:456:16278:237:8422:-475.084,0,-1185.95	0/1:314:210,104:210:7505:104:3689:-205.03,0,-532.485	1/1:190:1,189:1:36:189:6704:-544.273,-53.6,0	0/1:11:8,3:8:288:3:108:-5.97047,0,-22.3741	0/1:33:21,12:21:752:12:428:-27.3105,0,-56.57	1/1:10:0,10:0:0:10:356:-28.9059,-3.0103,0	0/1:25:17,8:17:599:8:284:-17.6036,0,-42.8808	0/1:61:50,11:50:1792:11:383:-14.0967,0,-135.031	0/1:626:423,203:423:15101:203:7278:-400.441,0,-1073.25	0/1:249:164,85:164:5835:85:3031:-162.462,0,-420.303	1/1:78:0,78:0:0:78:2791:-223.76,-23.4803,0	0/1:15:11,4:11:388:4:140:-7.04091,0,-28.1276	1/1:283:1,282:1:36:282:10057:-786.618,-82.2887,0	1/1:42:0,41:0:0:41:1455:-118.777,-12.3422,0	1/1:323:1,322:1:36:322:11470:-920.1,-93.73,0	1/1:177:1,176:1:36:176:6311:-486.916,-49.8016,0	0/1:224:140,84:140:4993:84:2994:-169.822,0,-346.251	0/1:249:165,84:165:5862:84:2966:-171.721,0,-427.3	1/1:205:1,204:1:36:204:7243:-590.509,-58.8084,0	1/1:301:0,301:0:0:301:10687:-840.721,-90.61,0	1/1:178:1,177:1:36:177:6272:-489.683,-50.1026,0	1/1:196:0,196:0:0:196:6984:-551.834,-59.0019,0	0/1:424:278,146:278:9909:146:5167:-287.294,0,-696.304	1/1:26:0,26:0:0:26:919:-80.3377,-7.82678,0	1/1:278:1,277:1:36:277:9902:-778.747,-80.7836,0	1/1:61:0,61:0:0:61:2167:-177.584,-18.3628,0	0/1:14:12,2:12:428:2:72:-1.30083,0,-31.9359	1/1:239:2,237:2:63:237:8344:-683.69,-66.0544,0	1/1:87:0,87:0:0:87:3100:-255.538,-26.1896,0	0/1:31:13,18:13:464:18:648:-45.9259,0,-32.5573	1/1:7:0,7:0:0:7:248:-20.1225,-2.10721,0	1/1:155:0,155:0:0:155:5495:-436.748,-46.6597,0	0/1:264:175,89:175:6237:89:3184:-165.978,0,-432.911	1/1:16:0,16:0:0:16:568:-50.1821,-4.81648,0	1/1:372:0,372:0:0:372:13228:-1083.99,-111.983,0	0/1:541:373,168:373:13325:168:5995:-311.811,0,-947.266	0/1:128:21,107:21:756:107:3796:-270.358,0,-26.4948	0/1:269:187,82:187:6657:82:2911:-144.839,0,-484.207	0/1:575:372,203:372:13243:203:7209:-413.425,0,-956.429	0/1:369:295,74:295:10540:74:2638:-102.28,0,-793.184	1/1:62:0,62:0:0:62:2224:-191.011,-18.6639,0	0/1:209:149,60:149:5328:60:2139:-104.575,0,-381.312	0/1:226:153,72:153:5407:72:2547:-134.666,0,-379.273	1/1:32:0,32:0:0:32:1126:-95.913,-9.63296,0	0/1:210:143,67:143:5098:67:2381:-122.811,0,-362.894	0/1:184:113,71:113:4013:71:2518:-158.954,0,-287.071	0/1:459:314,145:314:11206:145:5115:-273.552,0,-809.687	1/1:229:1,228:1:36:228:8124:-649.09,-65.3402,0	0/1:290:187,103:187:6605:103:3700:-203.514,0,-472.768	0/1:408:264,144:264:9394:144:5140:-281.584,0,-667.879	0/1:26:19,7:19:684:7:252:-14.4564,0,-51.3145	1/1:226:1,225:1:36:225:7964:-624.708,-65.13,0	1/1:169:1,168:1:36:168:5995:-485.528,-47.3531,0	1/1:304:0,304:0:0:304:10795:-841.211,-91.5131,0	1/1:165:0,165:0:0:165:5896:-456.379,-49.67,0	1/1:130:0,130:0:0:130:4635:-367.386,-39.1339,0	1/1:134:0,134:0:0:134:4793:-371.755,-40.338,0	1/1:273:1,272:1:36:272:9721:-761.769,-78.835,0	1/1:46:0,46:0:0:46:1652:-126.808,-13.8474,0	1/1:114:0,114:0:0:114:4096:-328.022,-34.3174,0	1/1:137:0,137:0:0:137:4858:-397.788,-41.2411,0	1/1:58:0,58:0:0:58:2071:-170.775,-17.4597,0	0/1:169:119,50:119:4231:50:1759:-96.5474,0,-306.888	0/1:328:266,60:266:9339:60:2152:-77.8366,0,-692.173	1/1:359:0,359:0:0:359:12763:-1016.4,-108.07,0	1/1:234:0,234:0:0:234:8339:-649.482,-70.441,0
chr12	17943068	.	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chr12	17943083	.	A	G	9642.81	PASS	AB=0.321251;ABP=1174.44;AC=37;AF=0.196809;AN=188;AO=1366;CIGAR=1X;DP=7470;DPB=7470;DPRA=2.23879;EPP=2865.93;EPPR=12563.5;GTI=3;LEN=1;MEANALT=1;MQM=29.2225;MQMR=31.7131;NS=94;NUMALT=1;ODDS=1.19907;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48829;QR=217559;RO=6104;RPL=1354;RPP=2865.93;RPPR=12563.5;RPR=12;RUN=1;SAF=1366;SAP=2969.24;SAR=0;SRF=6104;SRP=13257.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:63:48,15:48:1705:15:540:-15.8335,0,-101.55	0/1:133:87,46:87:3101:46:1644:-66.6191,0,-175.791	0/1:121:78,43:78:2717:43:1544:-63.3837,0,-165.861	0/0:142:142,0:142:5066:0:0:0,-42.7463,-368.44	0/1:81:61,20:61:2158:20:690:-23.8121,0,-144.48	0/1:77:55,22:55:1949:22:792:-27.739,0,-120.307	0/0:106:106,0:106:3778:0:0:0,-31.9092,-274.593	0/1:160:122,38:122:4361:38:1353:-38.9107,0,-278.829	0/0:74:74,0:74:2641:0:0:0,-22.2762,-170.958	0/0:73:73,0:73:2628:0:0:0,-21.9752,-190.23	0/0:21:21,0:21:756:0:0:0,-6.32163,-54.6926	0/0:45:45,0:45:1620:0:0:0,-13.5463,-103.86	0/0:43:43,0:43:1544:0:0:0,-12.9443,-98.9749	0/0:34:34,0:34:1216:0:0:0,-10.235,-83.8984	0/0:31:31,0:31:1116:0:0:0,-9.33193,-80.4246	0/0:20:20,0:20:716:0:0:0,-6.0206,-49.4515	0/0:47:47,0:47:1650:0:0:0,-14.1484,-107.44	0/0:18:18,0:18:648:0:0:0,-5.41854,-40.7726	0/0:22:22,0:22:788:0:0:0,-6.62266,-51.179	0/1:231:141,90:141:5018:90:3236:-165.15,0,-328.293	0/1:115:76,39:76:2701:39:1389:-60.1441,0,-179.099	0/1:191:114,77:114:4035:77:2720:-148.644,0,-283.799	0/0:61:61,0:61:2171:0:0:0,-18.3628,-158.625	0/0:138:136,2:136:4843:2:72:0,-36.3434,-331.996	0/0:50:50,0:50:1792:0:0:0,-15.0515,-123.277	0/1:322:234,88:234:8324:88:3108:-139.868,0,-583.354	0/0:153:153,0:153:5416:0:0:0,-46.0576,-371.802	0/0:15:15,0:15:525:0:0:0,-4.51545,-36.8167	0/1:250:148,102:148:5296:102:3660:-201.3,0,-359.856	0/1:138:91,47:91:3272:47:1692:-74.1526,0,-206.081	0/0:92:92,0:92:3269:0:0:0,-27.6948,-239.578	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.00217	0/1:5:3,2:3:108:2:72:-3.69363,0,-6.82662	0/0:1:1,0:1:36:0:0:0,-0.30103,-2.55871	0/1:6:5,1:5:180:1:36:-0.752527,0,-11.489	0/1:4:2,2:2:72:2:72:-3.4815,0,-5.23232	0/1:180:112,68:112:4024:68:2433:-130.048,0,-275.551	0/1:223:161,62:161:5734:62:2220:-85.8159,0,-368.031	0/0:35:35,0:35:1256:0:0:0,-10.536,-80.8047	0/1:3:2,1:2:72:1:36:-1.83311,0,-4.29569	0/0:87:87,0:87:3053:0:0:0,-26.1896,-211.076	0/0:17:17,0:17:608:0:0:0,-5.11751,-42.0636	0/0:86:86,0:86:3047:0:0:0,-25.8886,-210.109	0/0:26:26,0:26:928:0:0:0,-7.82678,-68.007	0/1:47:32,15:32:1152:15:532:-25.1206,0,-79.5629	0/1:134:100,34:100:3588:34:1220:-51.7618,0,-255.1	0/0:89:89,0:89:3192:0:0:0,-26.7917,-204.553	0/0:176:176,0:176:6276:0:0:0,-52.9813,-457.787	0/0:77:77,0:77:2702:0:0:0,-23.1793,-198.104	0/0:73:73,0:73:2608:0:0:0,-21.9752,-188.525	0/1:218:154,64:154:5494:64:2304:-108.122,0,-378.905	0/0:5:5,0:5:180:0:0:0,-1.50515,-13.3527	0/0:63:63,0:63:2245:0:0:0,-18.9649,-144.461	0/0:37:37,0:37:1332:0:0:0,-11.1381,-100.412	0/1:15:9,6:9:324:6:216:-9.38769,0,-18.7316	0/0:106:106,0:106:3789:0:0:0,-31.9092,-259.787	0/0:36:36,0:36:1277:0:0:0,-10.8371,-92.7622	0/1:9:5,4:5:168:4:144:-8.45213,0,-10.9126	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.0509	0/0:24:24,0:24:849:0:0:0,-7.22472,-58.8568	0/1:123:84,39:84:3016:39:1391:-64.5545,0,-204.353	0/0:4:4,0:4:121:0:0:0,-1.20412,-9.73757	0/0:124:124,0:124:4399:0:0:0,-37.3277,-336.066	0/1:183:120,63:120:4255:63:2247:-108.693,0,-283.241	0/0:40:40,0:40:1432:0:0:0,-12.0412,-98.917	0/1:101:78,23:78:2793:23:828:-29.8228,0,-189.585	0/1:170:126,44:126:4513:44:1584:-64.0646,0,-313.487	0/1:132:88,44:88:3134:44:1572:-75.0421,0,-218.978	0/0:7:7,0:7:252:0:0:0,-2.10721,-17.5117	0/0:56:49,7:49:1764:7:252:0,-0.651262,-109.162	0/1:89:60,29:60:2140:29:1036:-52.3242,0,-147.524	0/0:17:17,0:17:608:0:0:0,-5.11751,-44.6923	0/1:136:98,38:98:3497:38:1349:-46.2522,0,-208.007	0/1:44:38,6:38:1345:6:216:-0.827566,0,-86.3015	0/1:165:112,53:112:3978:53:1904:-80.5881,0,-262.563	0/0:70:70,0:70:2489:0:0:0,-21.0721,-181.529	0/1:164:107,57:107:3825:57:2052:-81.9816,0,-231.211	0/1:84:55,29:55:1950:29:1040:-41.5339,0,-121.421	0/1:3:1,2:1:36:2:72:-3.95845,0,-2.48451	0/0:48:48,0:48:1720:0:0:0,-14.4494,-118.25	0/0:85:85,0:85:2999:0:0:0,-25.5875,-194.705	0/0:245:244,1:244:8727:1:36:0,-70.8496,-632.531	0/0:69:69,0:69:2446:0:0:0,-20.7711,-179.439	0/0:28:28,0:28:1004:0:0:0,-8.42884,-73.4201	0/0:38:38,0:38:1368:0:0:0,-11.4391,-100.14	0/0:70:70,0:70:2508:0:0:0,-21.0721,-182.248	0/0:20:20,0:20:716:0:0:0,-6.0206,-46.5914	0/0:24:24,0:24:860:0:0:0,-7.22472,-54.9907	0/0:21:21,0:21:756:0:0:0,-6.32163,-48.6154	0/0:22:22,0:22:792:0:0:0,-6.62266,-54.7384	0/1:52:33,19:33:1173:19:661:-30.9027,0,-74.632	0/1:49:25,24:25:877:24:864:-48.4971,0,-59.041	0/0:75:75,0:75:2688:0:0:0,-22.5772,-195.386	0/0:55:55,0:55:1976:0:0:0,-16.5566,-142.613
chr12	17943232	.	TTTGA	TTTGT,GTTGT	92752	PASS	AB=0.356628,0.329337;ABP=672.364,952.464;AC=140,25;AF=0.744681,0.132979;AN=188;AO=4170,1244;CIGAR=4M1X,1X3M1X;DP=6617;DPB=6617.6;DPRA=0,1.86552;EPP=9049.37,2704.32;EPPR=2552.32;GTI=1;LEN=1,5;MEANALT=1.74194,2.38636;MQM=59.9691,59.7323;MQMR=59.9676;NS=94;NUMALT=2;ODDS=0.950864;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=50,50;PQR=0;PRO=0;QA=149112,43514;QR=41394;RO=1174;RPL=1,0;RPP=9049.37,2704.32;RPPR=2552.32;RPR=4169,1244;RUN=1,1;SAF=0,0;SAP=9058.05,2704.32;SAR=4170,1244;SRF=0;SRP=2552.32;SRR=1174;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	0/2:15:7,2,6:7:243:2,6:72,209:-14.8802,-11.1097,-30.2602,0,-13.8656,-17.9371	0/1:104:44,38,22:44:1529:38,22:1360,744:-97.6709,0,-112.873,-50.6227,-64.0147,-168.301	1/2:106:30,35,41:30:1063:35,41:1252,1440:-123.665,-30.6019,-106.664,-15.4984,0,-89.7511	1/1:141:0,141,0:0:0:141,0:5043,0:-453.994,-42.4452,0,-453.994,-42.4452,-453.994	1/2:55:9,26,20:9:317:26,20:928,687:-102.918,-29.9652,-47.9494,-49.8508,0,-69.6372	0/1:50:21,18,11:21:744:18,11:644,358:-46.2128,0,-55.2088,-23.6482,-31.7387,-80.9434	1/1:103:1,102,0:1:36:102,0:3655,0:-325.555,-27.4078,0,-325.856,-30.7051,-328.793	1/2:113:22,53,35:22:780:53,35:1896,1239:-185.376,-37.393,-84.9694,-91.0758,0,-144.07	1/1:45:0,45,0:0:0:45,0:1616,0:-145.73,-13.5464,0,-145.73,-13.5464,-145.73	1/1:68:0,68,0:0:0:68,0:2428,0:-218.776,-20.47,0,-218.776,-20.47,-218.776	1/1:36:0,36,0:0:0:36,0:1277,0:-115.231,-10.8371,0,-115.231,-10.8371,-115.231	1/1:42:0,41,0:0:0:41,0:1468,0:-132.056,-12.3422,0,-132.056,-12.3422,-132.056	1/1:31:0,30,0:0:0:30,0:1080,0:-97.1534,-9.0309,0,-97.1534,-9.0309,-97.1534	1/1:28:0,28,0:0:0:28,0:996,0:-89.9539,-8.42884,0,-89.9539,-8.42884,-89.9539	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/1:26:0,25,0:0:0:25,0:896,0:-80.6006,-7.52575,0,-80.6006,-7.52575,-80.6006	1/1:21:0,21,0:0:0:21,0:748,0:-67.6453,-6.32163,0,-67.6453,-6.32163,-67.6453	1/1:29:0,28,0:0:0:28,0:1000,0:-90.0617,-8.42884,0,-90.0617,-8.42884,-90.0617	1/1:26:0,26,0:0:0:26,0:908,0:-82.0325,-7.82678,0,-82.0325,-7.82678,-82.0325	1/2:185:51,71,63:51:1793:71,63:2536,2241:-228.1,-36.6903,-161.263,-60.8192,0,-187.8	1/2:130:38,53,39:38:1332:53,39:1896,1363:-145.655,-2.48556,-94.9206,-46.2217,0,-142.868	0/2:129:44,25,60:44:1547:25,60:900,2107:-158.234,-98.0415,-216.44,0,-52.48,-107.857	1/1:40:0,40,0:0:0:40,0:1436,0:-129.538,-12.0412,0,-129.538,-12.0412,-129.538	1/1:46:3,42,1:3:108:42,1:1512,36:-126.299,-3.83101,0,-124.265,-9.70584,-132.776	1/1:34:0,34,0:0:0:34,0:1220,0:-110.107,-10.235,0,-110.107,-10.235,-110.107	0/1:322:109,112,100:109:3823:112,100:3999,3486:-293.22,0,-277.394,-43.3925,-28.4667,-324.395	1/1:125:0,122,0:0:0:122,0:4368,0:-392.963,-36.7257,0,-392.963,-36.7257,-392.963	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/2:184:41,67,73:41:1447:67,73:2388,2562:-272.984,-90.6728,-188.335,-76.8229,0,-172.677	0/1:117:36,48,32:36:1262:48,32:1715,1126:-128.993,0,-88.242,-48.1732,-11.0319,-141.23	1/1:89:0,86,3:0:0:86,3:3068,108:-275.99,-25.8886,0,-267.18,-16.7189,-266.277	0/1:22:6,12,4:6:213:12,4:428,142:-33.085,0,-13.7429,-23.3232,-5.78688,-39.4738	1/2:18:2,9,6:2:66:9,6:324,210:-37.6145,-11.771,-14.3946,-21.1324,0,-24.658	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:5:0,4,1:0:0:4,1:144,36:-15.0469,-3.29724,-2.09312,-12.1095,0,-11.8085	0/2:7:3,2,2:3:108:2,2:72,72:-4.97174,0,-8.21019,0,-2.93742,-8.21019	0/1:132:49,43,40:49:1746:43,40:1548,1422:-111.561,0,-129.374,-10.4321,-26.437,-140.706	0/1:168:62,56,50:62:2206:56,50:1988,1697:-143.326,0,-162.937,-24.4033,-42.208,-189.138	1/1:40:0,40,0:0:0:40,0:1432,0:-129.178,-12.0412,0,-129.178,-12.0412,-129.178	0/1:4:2,2,0:2:57:2,0:72,0:-5.6326,0,-4.20445,-6.23466,-4.80651,-10.7189	1/1:108:0,108,0:0:0:108,0:3867,0:-348.224,-32.5112,0,-348.224,-32.5112,-348.224	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:85:0,85,0:0:0:85,0:3036,0:-273.471,-25.5876,0,-273.471,-25.5876,-273.471	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/2:67:13,22,31:13:452:22,31:784,1025:-106.113,-46.1108,-76.2432,-27.1626,0,-54.5779	0/1:120:41,55,24:41:1457:55,24:1980,837:-149.224,0,-102.176,-93.4967,-50.6629,-204.999	1/1:87:0,84,1:0:0:84,1:3005,31:-270.346,-25.2865,0,-267.858,-22.7864,-267.557	1/1:114:0,114,0:0:0:114,0:4063,0:-365.858,-34.3174,0,-365.858,-34.3174,-365.858	1/1:102:0,102,0:0:0:102,0:3645,0:-328.253,-30.7051,0,-328.253,-30.7051,-328.253	1/1:57:0,56,1:0:0:56,1:1996,34:-179.574,-16.8577,0,-176.816,-13.7598,-176.515	1/2:191:62,66,62:62:2191:66,62:2360,2215:-175.929,-2.15911,-160.729,-13.9982,0,-173.772	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:102:0,102,0:0:0:102,0:3645,0:-328.253,-30.7051,0,-328.253,-30.7051,-328.253	1/1:33:0,32,1:0:0:32,1:1152,36:-103.63,-9.63296,0,-100.693,-6.33572,-100.392	1/2:18:3,11,4:3:106:11,4:396,132:-33.4467,-2.01623,-7.34771,-23.6854,0,-31.1127	1/1:71:0,71,0:0:0:71,0:2544,0:-229.21,-21.3731,0,-229.21,-21.3731,-229.21	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/2:13:1,9,3:1:31:9,3:324,101:-31.875,-5.72186,-5.49442,-23.9982,0,-25.5786	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:38:0,38,0:0:0:38,0:1353,0:-122.069,-11.4391,0,-122.069,-11.4391,-122.069	0/1:108:42,38,28:42:1482:38,28:1360,994:-98.2621,0,-109.237,-29.9167,-39.6859,-142.163	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:116:0,116,0:0:0:116,0:4150,0:-373.683,-34.9195,0,-373.683,-34.9195,-373.683	1/2:189:46,74,67:46:1631:74,67:2652,2354:-261.158,-58.7103,-169.313,-83.4182,0,-196.125	1/1:54:3,51,0:3:108:51,0:1826,0:-154.174,-6.18045,0,-155.077,-15.3525,-163.89	1/2:60:14,27,19:14:494:27,19:968,657:-87.8987,-13.1545,-45.2554,-38.7311,0,-73.2354	0/2:123:47,34,42:47:1642:34,42:1220,1471:-104.939,-19.5699,-142.905,0,-34.0468,-120.921	0/2:147:47,35,65:47:1672:35,65:1244,2245:-168.236,-81.008,-206.739,0,-34.8898,-116.696	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:71:23,23,25:23:795:23,25:800,887:-65.7981,-7.68074,-65.3502,-0.449008,0,-57.5197	0/1:86:28,31,26:28:979:31,26:1116,919:-82.6354,0,-70.3113,-16.2196,-4.79388,-88.0331	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	0/1:111:42,36,33:42:1473:36,33:1262,1151:-90.0485,0,-109.034,-9.08042,-26.2592,-119.016	0/2:68:21,17,30:21:744:17,30:608,1059:-79.9125,-36.6554,-92.1471,0,-11.0282,-51.5759	1/2:140:34,52,53:34:1210:52,53:1847,1845:-191.571,-51.3383,-134.304,-51.848,0,-134.51	1/1:76:0,75,1:0:0:75,1:2676,36:-240.726,-22.5773,0,-237.789,-19.28,-237.488	0/1:178:57,66,55:57:2031:66,55:2334,1934:-172.939,0,-145.682,-32.6703,-8.12483,-181.663	0/1:84:29,38,17:29:1019:38,17:1368,599:-102.897,0,-71.4998,-62.8603,-34.1694,-140.679	0/2:8:3,0,5:3:106:0,5:0,176:-13.7771,-14.6802,-23.3135,0,-8.98601,-7.48086	1/1:76:0,75,0:0:0:75,0:2692,0:-242.273,-22.5773,0,-242.273,-22.5773,-242.273	1/1:46:0,46,0:0:0:46,0:1656,0:-149.328,-13.8474,0,-149.328,-13.8474,-149.328	1/1:134:0,134,0:0:0:134,0:4812,0:-433.234,-40.338,0,-433.234,-40.338,-433.234	1/1:73:0,72,0:0:0:72,0:2584,0:-232.449,-21.6742,0,-232.449,-21.6742,-232.449	1/1:32:0,32,0:0:0:32,0:1143,0:-103.179,-9.63296,0,-103.179,-9.63296,-103.179	1/1:31:0,31,0:0:0:31,0:1108,0:-100.031,-9.33193,0,-100.031,-9.33193,-100.031	1/1:70:1,69,0:1:33:69,0:2476,0:-219.794,-17.773,0,-220.095,-20.7711,-222.763	1/1:33:0,33,0:0:0:33,0:1158,0:-104.524,-9.93399,0,-104.524,-9.93399,-104.524	1/1:45:0,45,0:0:0:45,0:1620,0:-146.09,-13.5464,0,-146.09,-13.5464,-146.09	1/1:25:0,25,0:0:0:25,0:896,0:-80.9604,-7.52575,0,-80.9604,-7.52575,-80.9604	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	0/2:51:16,14,20:16:576:14,20:485,709:-52.948,-18.3515,-61.138,0,-7.59505,-40.9846	0/2:58:21,13,22:21:742:13,22:468,782:-57.4009,-25.5339,-82.0486,0,-22.2369,-53.8036	1/1:65:0,65,0:0:0:65,0:2328,0:-209.78,-19.567,0,-209.78,-19.567,-209.78	1/1:49:0,49,0:0:0:49,0:1760,0:-158.684,-14.7505,0,-158.684,-14.7505,-158.684
chr12	18499721	.	TTAT	CTAT,CTAC	196650	PASS	AB=0.511034,0.486239;ABP=7.27517,9.64425;AC=146,40;AF=0.784946,0.215054;AN=186;AO=7075,1981;CIGAR=1X3M,1X2M1X;DP=9078;DPB=9078;DPRA=39.8813,1.35838;EPP=15366.2,4304.7;EPPR=0;GTI=0;LEN=1,4;MEANALT=1.7033,2.26667;MQM=59.9372,59.4518;MQMR=0;NS=93;NUMALT=2;ODDS=1.15268;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=253335,70540;QR=0;RO=0;RPL=0,0;RPP=15366.2,4304.7;RPPR=0;RPR=7075,1981;RUN=1,1;SAF=7075,1981;SAP=15366.2,4304.7;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:20:0,9,11:0:0:9,11:320,394:-58.5668,-32.4902,-29.781,-26.4331,0,-23.1218	1/2:197:0,113,84:0:0:113,84:4041,2983:-572.879,-243.377,-209.36,-329.858,0,-304.572	1/2:98:0,54,44:0:0:54,44:1940,1570:-286.498,-128.24,-111.984,-158.616,0,-145.371	1/1:222:0,222,0:0:0:222,0:7968,0:-717.137,-66.8287,0,-717.137,-66.8287,-717.137	1/2:20:0,10,10:0:0:10,10:341,360:-57.3911,-29.734,-26.7237,-28.0075,0,-24.9972	1/2:35:0,20,15:0:0:20,15:716,538:-102.621,-44.2323,-38.2117,-58.7471,0,-54.2317	1/1:126:0,126,0:0:0:126,0:4481,0:-403.461,-37.9298,0,-403.461,-37.9298,-403.461	1/2:153:0,83,70:0:0:83,70:2970,2502:-446.447,-204.301,-179.316,-242.504,0,-221.431	1/1:66:0,66,0:0:0:66,0:2345,0:-211.303,-19.868,0,-211.303,-19.868,-211.303	1/1:171:0,171,0:0:0:171,0:6124,0:-551.26,-51.4761,0,-551.26,-51.4761,-551.26	1/1:59:0,59,0:0:0:59,0:2115,0:-190.618,-17.7608,0,-190.618,-17.7608,-190.618	1/1:65:0,65,0:0:0:65,0:2332,0:-210.125,-19.567,0,-210.125,-19.567,-210.125	1/1:67:0,66,0:0:0:66,0:2372,0:-213.342,-19.868,0,-213.342,-19.868,-213.342	1/1:80:0,79,0:0:0:79,0:2844,0:-255.836,-23.7814,0,-255.836,-23.7814,-255.836	1/1:52:0,52,0:0:0:52,0:1844,0:-166.238,-15.6536,0,-166.238,-15.6536,-166.238	1/1:35:0,35,0:0:0:35,0:1256,0:-113.345,-10.5361,0,-113.345,-10.5361,-113.345	1/1:86:0,86,0:0:0:86,0:3088,0:-278.132,-25.8886,0,-278.132,-25.8886,-278.132	1/1:63:0,63,0:0:0:63,0:2268,0:-204.376,-18.9649,0,-204.376,-18.9649,-204.376	1/1:20:0,20,0:0:0:20,0:716,0:-64.7485,-6.0206,0,-64.7485,-6.0206,-64.7485	1/2:181:0,107,72:0:0:107,72:3848,2579:-524.302,-210.356,-178.146,-313.984,0,-292.31	1/2:116:0,62,54:0:0:62,54:2228,1938:-340.189,-158.428,-139.764,-182.12,0,-165.864	1/2:77:0,21,56:0:0:21,56:756,1998:-224.92,-163.234,-156.912,-62.0456,0,-45.1879	1/1:17:0,16,1:0:0:16,1:576,36:-51.8152,-4.81648,0,-48.8777,-1.51924,-48.5767	1/1:135:0,129,5:0:0:129,5:4628,171:-416.326,-38.8329,0,-402.448,-24.8776,-400.942	1/1:36:0,36,0:0:0:36,0:1296,0:-116.944,-10.8371,0,-116.944,-10.8371,-116.944	1/2:316:0,169,146:0:0:169,146:6047,5201:-916.91,-423.838,-372.964,-493.068,0,-449.118	1/1:182:0,182,0:0:0:182,0:6536,0:-588.319,-54.7875,0,-588.319,-54.7875,-588.319	1/1:42:0,41,0:0:0:41,0:1464,0:-131.693,-12.3422,0,-131.693,-12.3422,-131.693	1/2:293:0,145,147:0:0:145,147:5176,5223:-847.54,-425.57,-381.92,-421.967,0,-377.715	1/2:168:0,100,68:0:0:100,68:3585,2420:-489.854,-197.459,-167.356,-292.752,0,-272.282	1/1:128:0,128,0:0:0:128,0:4592,0:-413.406,-38.5318,0,-413.406,-38.5318,-413.406	2/2:3:0,0,3:0:0:0,3:0,108:-10.0752,-10.0752,-10.0752,-0.90309,-0.90309,0	1/2:12:0,3,9:0:0:3,9:108,323:-35.5121,-26.6996,-25.7965,-9.17208,0,-6.46281	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:5:0,2,3:0:0:2,3:72,107:-14.9552,-9.07908,-8.47702,-6.23466,0,-5.33157	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:214:0,107,107:0:0:107,107:3828,3813:-622.878,-311,-278.79,-312.235,0,-280.024	1/2:178:0,86,92:0:0:86,92:3082,3272:-518.237,-266.876,-240.987,-251.718,0,-224.024	1/1:48:0,48,0:0:0:48,0:1720,0:-155.078,-14.4494,0,-155.078,-14.4494,-155.078	1/2:6:0,3,3:0:0:3,3:108,101:-17.3439,-8.52004,-7.61695,-9.17208,0,-8.26899	1/1:188:0,187,0:0:0:187,0:6689,0:-601.226,-56.2926,0,-601.226,-56.2926,-601.226	1/1:23:0,22,0:0:0:22,0:788,0:-70.9329,-6.62266,0,-70.9329,-6.62266,-70.9329	1/1:81:0,81,0:0:0:81,0:2900,0:-261.224,-24.3834,0,-261.224,-24.3834,-261.224	1/1:58:0,58,0:0:0:58,0:2084,0:-187.83,-17.4597,0,-187.83,-17.4597,-187.83	1/2:62:0,29,33:0:0:29,33:1044,1179:-181.665,-96.4782,-87.7483,-85.5449,0,-75.6109	1/2:74:0,41,33:0:0:41,33:1472,1183:-216.897,-96.8216,-84.4793,-120.434,0,-110.5	1/1:64:0,64,0:0:0:64,0:2284,0:-205.822,-19.2659,0,-205.822,-19.2659,-205.822	1/1:195:0,195,0:0:0:195,0:6969,0:-627.274,-58.7009,0,-627.274,-58.7009,-627.274	1/1:121:0,121,0:0:0:121,0:4314,0:-388.434,-36.4246,0,-388.434,-36.4246,-388.434	1/1:224:0,224,0:0:0:224,0:8018,0:-721.637,-67.4307,0,-721.637,-67.4307,-721.637	1/2:180:0,89,91:0:0:89,91:3196,3241:-525.182,-264.473,-237.682,-261.066,0,-233.673	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/1:161:0,161,0:0:0:161,0:5763,0:-518.778,-48.4658,0,-518.778,-48.4658,-518.778	1/1:51:0,51,0:0:0:51,0:1825,0:-164.531,-15.3525,0,-164.531,-15.3525,-164.531	1/2:5:0,1,4:0:0:1,4:36,144:-15.0469,-12.1095,-11.8085,-3.29724,0,-2.09312	1/1:166:0,164,1:0:0:164,1:5880,35:-529.005,-49.3689,0,-526.163,-46.4801,-525.862	1/1:7:0,7,0:0:0:7,0:237,0:-21.6591,-2.10721,0,-21.6591,-2.10721,-21.6591	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/1:89:0,88,0:0:0:88,0:3157,0:-284.123,-26.4906,0,-284.123,-26.4906,-284.123	1/2:142:0,67,73:0:0:67,73:2385,2627:-408.44,-214.061,-193.892,-194.377,0,-172.402	.:.:.:.:.:.:.:.	1/1:336:0,332,2:0:0:332,2:11891,72:-1069.68,-99.942,0,-1063.81,-94.0671,-1063.2	1/2:205:0,131,71:0:0:131,71:4708,2522:-589.536,-205.478,-166.043,-384.055,0,-362.682	1/1:117:0,115,2:0:0:115,2:4086,71:-367.526,-34.6185,0,-361.74,-28.4785,-361.138	1/2:53:0,24,29:0:0:24,29:864,1027:-154.506,-84.0052,-76.7805,-70.8578,0,-62.128	1/2:81:0,47,34:0:0:47,34:1679,1201:-235.046,-98.1529,-84.0045,-137.248,0,-127.013	1/2:156:0,47,109:0:0:47,109:1688,3901:-456.15,-318.45,-304.302,-138.059,0,-105.246	1/1:22:0,22,0:0:0:22,0:773,0:-69.8895,-6.62266,0,-69.8895,-6.62266,-69.8895	1/2:93:0,51,42:0:0:51,42:1828,1487:-270.514,-121.426,-106.073,-149.444,0,-136.801	1/2:102:0,51,51:0:0:51,51:1832,1833:-299.325,-149.876,-134.524,-149.808,0,-134.456	1/1:16:0,16,0:0:0:16,0:568,0:-51.4517,-4.81648,0,-51.4517,-4.81648,-51.4517	1/2:159:0,94,64:0:0:94,64:3361,2260:-458.157,-184.104,-155.807,-274.175,0,-254.909	1/2:97:0,41,56:0:0:41,56:1449,1955:-277.273,-159.262,-146.92,-118.362,0,-101.504	1/2:140:0,73,67:0:0:73,67:2616,2367:-406.393,-193.036,-171.061,-213.712,0,-193.543	1/1:194:0,193,0:0:0:193,0:6897,0:-620.438,-58.0988,0,-620.438,-58.0988,-620.438	1/2:37:0,9,28:0:0:9,28:320,986:-106.603,-80.5342,-77.8249,-26.4233,0,-17.9944	1/2:192:0,103,89:0:0:103,89:3700,3160:-559.588,-257.753,-226.747,-302.192,0,-275.4	1/2:6:0,4,2:0:0:4,2:140,72:-17.618,-6.23466,-5.03054,-11.7398,0,-11.1378	1/1:179:0,179,0:0:0:179,0:6424,0:-578.244,-53.8844,0,-578.244,-53.8844,-578.244	1/1:95:0,95,0:0:0:95,0:3397,0:-305.937,-28.5979,0,-305.937,-28.5979,-305.937	1/1:158:0,156,2:0:0:156,2:5577,71:-501.697,-46.9607,0,-495.929,-40.8392,-495.327	1/1:97:0,97,0:0:0:97,0:3484,0:-313.77,-29.1999,0,-313.77,-29.1999,-313.77	1/1:62:0,62,0:0:0:62,0:2224,0:-200.423,-18.6639,0,-200.423,-18.6639,-200.423	1/1:85:0,85,0:0:0:85,0:3038,0:-273.649,-25.5876,0,-273.649,-25.5876,-273.649	1/1:123:0,123,0:0:0:123,0:4408,0:-396.892,-37.0267,0,-396.892,-37.0267,-396.892	1/1:33:0,33,0:0:0:33,0:1184,0:-106.867,-9.93399,0,-106.867,-9.93399,-106.867	1/1:62:0,62,0:0:0:62,0:2232,0:-201.14,-18.6639,0,-201.14,-18.6639,-201.14	1/1:74:0,74,0:0:0:74,0:2656,0:-239.281,-22.2762,0,-239.281,-22.2762,-239.281	1/1:39:0,39,0:0:0:39,0:1392,0:-125.579,-11.7402,0,-125.579,-11.7402,-125.579	1/2:92:0,46,46:0:0:46,46:1648,1653:-269.605,-135.203,-121.355,-134.761,0,-120.914	1/2:68:0,19,48:0:0:19,48:684,1716:-195.708,-139.897,-134.177,-55.8112,0,-41.3617	1/1:118:0,116,2:0:0:116,2:4160,68:-374.242,-34.9195,0,-368.726,-29.0638,-368.124	1/1:85:0,85,0:0:0:85,0:3047,0:-274.457,-25.5876,0,-274.457,-25.5876,-274.457
chr12	18593770	.	GTGGAGT	ATGGAGT,ATGGGAGT	245311	PASS	AB=0.690718,0.303541;ABP=1653.77,1754.65;AC=150,38;AF=0.797872,0.202128;AN=188;AO=9758,1597;CIGAR=1X6M,1X1M1I5M;DP=11429;DPB=11658.1;DPRA=0,1.19752;EPP=21192.2,3470.85;EPPR=24.725;GTI=4;LEN=1,8;MEANALT=2.09574,2.65116;MQM=59.9995,59.7107;MQMR=60;NS=94;NUMALT=2;ODDS=1.83925;PAIRED=0,0;PAIREDR=0;PAO=2.5,2.5;PQA=88,88;PQR=0;PRO=0;QA=349425,56108;QR=353;RO=10;RPL=9758,1597;RPP=21192.2,3470.85;RPPR=24.725;RPR=0,0;RUN=1,1;SAF=0,0;SAP=21192.2,3470.85;SAR=9758,1597;SRF=0;SRP=24.725;SRR=10;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:141:0,99,40:0:0:99,40:3535,1397:-401.805,-113.601,-83.7989,-288.173,0,-276.132	1/2:129:0,93,35:0:0:93,35:3336,1230:-372.323,-100.213,-72.2169,-272.21,0,-261.674	1/2:212:0,145,67:0:0:145,67:5212,2359:-617.604,-192.391,-148.742,-425.567,0,-405.398	1/1:279:0,277,0:0:0:277,0:9929,0:-893.191,-83.3853,0,-893.191,-83.3853,-893.191	1/2:88:0,47,41:0:0:47,41:1688,1457:-256.786,-119.085,-104.936,-138.059,0,-125.716	1/2:58:0,38,20:0:0:38,20:1349,720:-169.019,-59.1082,-47.669,-110.269,0,-104.249	1/1:174:0,174,0:0:0:174,0:6240,0:-561.694,-52.3792,0,-561.694,-52.3792,-561.694	1/2:191:0,157,34:0:0:157,34:5598,1186:-553.124,-96.7939,-49.5322,-456.68,0,-446.445	1/1:195:0,195,0:0:0:195,0:6980,0:-628.264,-58.7009,0,-628.264,-58.7009,-628.264	1/1:86:0,84,0:0:0:84,0:3020,0:-271.699,-25.2865,0,-271.699,-25.2865,-271.699	1/1:51:0,51,0:0:0:51,0:1836,0:-165.521,-15.3525,0,-165.521,-15.3525,-165.521	1/1:124:0,123,0:0:0:123,0:4406,0:-396.291,-37.0267,0,-396.291,-37.0267,-396.291	1/1:98:0,98,0:0:0:98,0:3515,0:-316.559,-29.5009,0,-316.559,-29.5009,-316.559	1/1:32:0,32,0:0:0:32,0:1140,0:-102.909,-9.63296,0,-102.909,-9.63296,-102.909	1/1:69:0,69,0:0:0:69,0:2472,0:-222.734,-20.7711,0,-222.734,-20.7711,-222.734	1/1:61:0,61,0:0:0:61,0:2192,0:-197.545,-18.3628,0,-197.545,-18.3628,-197.545	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/1:24:0,24,0:0:0:24,0:856,0:-77.3611,-7.22472,0,-77.3611,-7.22472,-77.3611	1/1:35:0,35,0:0:0:35,0:1252,0:-112.985,-10.5361,0,-112.985,-10.5361,-112.985	1/2:230:0,136,94:0:0:136,94:4880,3324:-669.116,-271.06,-230.12,-398.411,0,-370.114	1/2:134:0,81,53:0:0:81,53:2897,1855:-387.466,-151.238,-126.854,-236.581,0,-220.626	1/2:229:1,120,107:1:36:120,107:4292,3746:-651.534,-301.854,-268.668,-347.076,0,-317.803	1/1:183:0,182,0:0:0:182,0:6497,0:-584.535,-54.7875,0,-584.535,-54.7875,-584.535	1/1:120:0,116,4:0:0:116,4:4137,144:-372.154,-34.9195,0,-360.404,-22.81,-359.2	1/1:145:0,144,1:0:0:144,1:5156,36:-463.821,-43.3483,0,-460.884,-40.0511,-460.583	1/2:363:1,278,82:1:36:278,82:9929,2882:-1040.82,-231.615,-150.866,-806.582,0,-784.835	1/1:300:1,295,0:1:35:295,0:10556,0:-946.475,-85.9506,0,-946.776,-88.8039,-949.623	1/1:44:0,44,0:0:0:44,0:1580,0:-142.492,-13.2453,0,-142.492,-13.2453,-142.492	1/2:365:0,257,107:0:0:257,107:9176,3768:-1054.79,-306.698,-229.334,-748.088,0,-715.878	1/2:160:0,118,42:0:0:118,42:4236,1478:-466.153,-120.611,-85.0892,-345.837,0,-333.194	1/1:132:0,130,1:0:0:130,1:4656,36:-418.842,-39.1339,0,-415.905,-36.1965,-415.603	1/2:15:0,12,3:0:0:12,3:432,105:-44.1499,-8.89288,-5.28052,-35.6088,0,-34.7057	1/2:36:0,24,12:0:0:24,12:864,416:-104.666,-34.1588,-26.9341,-70.8578,0,-67.2455	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:7:0,6,1:0:0:6,1:208,27:-19.3707,-2.39875,-0.592573,-17.2529,0,-16.9519	1/2:31:0,14,14:0:0:14,14:504,470:-79.181,-38.0481,-33.8337,-41.1238,0,-36.9094	1/2:237:1,194,40:1:36:194,40:6972,1418:-680.996,-112.511,-57.0489,-565.844,0,-556.74	1/2:153:0,90,62:0:0:90,62:3228,2201:-442.689,-179.395,-152.302,-263.398,0,-244.734	1/1:43:0,43,0:0:0:43,0:1531,0:-138.082,-12.9443,0,-138.082,-12.9443,-138.082	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.0469,0,-14.4449	1/1:183:0,182,0:0:0:182,0:6505,0:-585.174,-54.7875,0,-585.174,-54.7875,-585.174	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	1/1:235:0,234,0:0:0:234,0:8360,0:-752.095,-70.441,0,-752.095,-70.441,-752.095	1/1:62:0,62,0:0:0:62,0:2224,0:-200.424,-18.6639,0,-200.424,-18.6639,-200.424	1/2:61:0,47,14:0:0:47,14:1680,484:-176.664,-39.6732,-25.5248,-137.339,0,-133.124	1/2:211:0,145,64:0:0:145,64:5204,2275:-609.906,-185.414,-141.764,-424.537,0,-405.271	1/1:131:0,130,0:0:0:130,0:4672,0:-420.438,-39.1339,0,-420.438,-39.1339,-420.438	1/1:251:0,248,0:0:0:248,0:8868,0:-797.726,-74.6554,0,-797.726,-74.6554,-797.726	1/1:167:0,166,0:0:0:166,0:5941,0:-534.437,-49.971,0,-534.437,-49.971,-534.437	1/1:125:1,124,0:1:36:124,0:4444,0:-396.532,-34.0305,0,-396.833,-37.3277,-399.771	1/2:260:1,191,68:1:36:191,68:6842,2378:-748.164,-190.466,-135.906,-555.054,0,-537.521	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:202:0,201,0:0:0:201,0:7193,0:-647.061,-60.507,0,-647.061,-60.507,-647.061	1/1:106:0,106,0:0:0:106,0:3800,0:-342.197,-31.9092,0,-342.197,-31.9092,-342.197	1/1:17:0,13,1:0:0:13,1:460,34:-41.3827,-3.91339,0,-38.6256,-1.15955,-38.3245	1/1:147:0,146,0:0:0:146,0:5224,0:-470.018,-43.9504,0,-470.018,-43.9504,-470.018	1/1:99:0,98,0:0:0:98,0:3498,0:-314.671,-29.5009,0,-314.671,-29.5009,-314.671	1/2:15:0,10,5:0:0:10,5:356,180:-44.0594,-15.0469,-12.0366,-29.3709,0,-27.8658	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/1:88:0,88,0:0:0:88,0:3147,0:-283.455,-26.4906,0,-283.455,-26.4906,-283.455	1/2:81:0,60,21:0:0:60,21:2152,752:-237.164,-61.637,-43.5752,-175.885,0,-169.564	1/1:14:0,14,0:0:0:14,0:500,0:-45.3362,-4.21442,0,-45.3362,-4.21442,-45.3362	1/1:203:0,202,0:0:0:202,0:7229,0:-650.302,-60.8081,0,-650.302,-60.8081,-650.302	1/2:227:0,155,72:0:0:155,72:5553,2532:-659.278,-206.399,-159.739,-453.173,0,-431.499	1/1:103:0,99,4:0:0:99,4:3542,141:-318.636,-29.802,0,-307.156,-17.9692,-305.952	1/2:127:0,86,40:0:0:86,40:3080,1364:-361.782,-110.589,-84.7003,-251.18,0,-239.139	1/2:172:0,102,69:0:0:102,69:3644,2423:-494.3,-197.194,-166.488,-297.101,0,-276.33	1/2:228:0,124,103:0:0:124,103:4434,3577:-652.298,-290.747,-253.419,-361.544,0,-330.537	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/2:144:0,105,37:0:0:105,37:3772,1311:-414.567,-106.85,-75.2423,-307.769,0,-296.631	1/2:24:0,14,9:0:0:14,9:504,324:-67.5606,-26.4368,-22.2223,-41.1238,0,-38.4146	1/1:19:0,18,0:0:0:18,0:640,0:-57.6738,-5.41854,0,-57.6738,-5.41854,-57.6738	1/2:230:0,188,42:0:0:188,42:6748,1497:-672.8,-122.359,-65.765,-550.798,0,-538.155	1/2:67:0,46,21:0:0:46,21:1644,754:-195.908,-61.8652,-48.0178,-134.401,0,-128.08	1/2:175:0,120,54:0:0:120,54:4281,1897:-503.389,-154.398,-118.274,-349.082,0,-332.827	1/1:259:0,257,0:0:0:257,0:9209,0:-828.417,-77.3647,0,-828.417,-77.3647,-828.417	1/2:154:0,113,40:0:0:113,40:4056,1377:-442.794,-111.93,-77.9137,-330.959,0,-318.918	1/2:111:0,82,27:0:0:82,27:2929,941:-315.34,-76.5302,-51.8457,-238.838,0,-230.71	1/2:50:0,38,12:0:0:38,12:1368,420:-146.148,-34.5184,-23.0793,-111.982,0,-108.369	1/1:177:0,177,0:0:0:177,0:6352,0:-571.769,-53.2823,0,-571.769,-53.2823,-571.769	1/1:174:0,173,0:0:0:173,0:6166,0:-554.678,-52.0782,0,-554.678,-52.0782,-554.678	1/1:221:1,218,0:1:35:218,0:7812,0:-699.603,-62.7801,0,-699.904,-65.6245,-702.752	1/1:84:0,83,0:0:0:83,0:2984,0:-268.432,-24.9855,0,-268.432,-24.9855,-268.432	1/1:84:1,82,0:1:36:82,0:2948,0:-261.955,-21.747,0,-262.256,-24.6845,-265.193	1/1:45:0,45,0:0:0:45,0:1612,0:-145.37,-13.5464,0,-145.37,-13.5464,-145.37	1/1:158:0,156,0:0:0:156,0:5589,0:-502.77,-46.9607,0,-502.77,-46.9607,-502.77	1/1:28:0,28,0:0:0:28,0:999,0:-90.2245,-8.42884,0,-90.2245,-8.42884,-90.2245	1/1:94:0,93,0:0:0:93,0:3336,0:-300.097,-27.9958,0,-300.097,-27.9958,-300.097	1/1:70:0,69,0:0:0:69,0:2484,0:-223.463,-20.7711,0,-223.463,-20.7711,-223.463	1/1:20:0,20,0:0:0:20,0:712,0:-64.4067,-6.0206,0,-64.4067,-6.0206,-64.4067	1/2:57:0,40,16:0:0:40,16:1440,553:-162.424,-44.9165,-32.8753,-117.516,0,-112.7	1/2:45:0,29,16:0:0:29,16:1040,567:-131.374,-46.5454,-37.8155,-85.1845,0,-80.368	1/1:215:2,212,0:2:67:212,0:7589,0:-676.702,-58.3557,0,-677.304,-63.8184,-682.73	1/1:135:0,135,0:0:0:135,0:4848,0:-436.472,-40.6391,0,-436.472,-40.6391,-436.472
chr12	18593890	.	A	T	25782.1	PASS	AB=0.632269;ABP=350.546;AC=40;AF=0.215054;AN=186;AO=1450;CIGAR=1X;DP=4803;DPB=4803;DPRA=1.20999;EPP=3151.65;EPPR=7279.61;GTI=4;LEN=1;MEANALT=1;MQM=56.7648;MQMR=59.9138;NS=93;NUMALT=1;ODDS=0.717236;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51977;QR=119879;RO=3351;RPL=1450;RPP=3151.65;RPPR=7279.61;RPR=0;RUN=1;SAF=0;SAP=3151.65;SAR=1450;SRF=0;SRP=7279.61;SRR=3351;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:27:8,19:8:288:19:684:-52.9371,0,-18.1396	0/1:46:9,37:9:324:37:1313:-104.266,0,-15.6407	0/1:69:24,45:24:856:45:1616:-124.34,0,-56.59	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.187	0/1:8:3,5:3:108:5:180:-14.1375,0,-7.66693	0/1:18:7,11:7:252:11:396:-30.5096,0,-17.6104	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:80:23,57:23:828:57:2052:-159.439,0,-50.7617	0/0:36:36,0:36:1281:0:0:0,-10.8371,-115.591	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.351	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.519	0/0:79:79,0:79:2840:0:0:0,-23.7814,-255.768	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.398	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.806	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:33:33,0:33:1180:0:0:0,-9.93399,-106.508	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7671	0/1:60:26,34:26:913:34:1224:-92.2346,0,-64.4222	0/1:142:52,90:52:1868:90:3232:-247.991,0,-125.653	0/1:15:4,11:4:144:11:396:-31.4206,0,-8.79817	0/0:42:42,0:42:1482:0:0:0,-12.6433,-133.67	0/1:43:38,5:38:1360:5:180:-3.39969,0,-109.727	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:158:51,107:51:1832:107:3840:-297.768,0,-117.598	0/0:81:81,0:81:2881:0:0:0,-24.3834,-259.526	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:125:47,78:47:1692:78:2787:-213.271,0,-114.938	0/1:58:23,35:23:820:35:1252:-95.1514,0,-56.6628	0/1:53:45,8:45:1601:8:288:-10.3073,0,-128.424	0/1:11:4,7:4:144:7:248:-19.3444,0,-10.0023	0/1:6:2,4:2:72:4:144:-11.498,0,-5.03054	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.312	0/1:5:4,1:4:144:1:36:-2.08802,0,-11.8085	0/1:8:3,5:3:108:5:180:-13.9928,0,-7.66533	0/1:179:72,107:72:2580:107:3852:-292.624,0,-178.565	0/1:38:11,27:11:396:27:972:-76.1992,0,-24.5432	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.921	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0739	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.5192	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:70:31,39:31:1103:39:1389:-104.173,0,-78.5077	0/1:39:8,31:8:288:31:1101:-87.629,0,-14.5272	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3201	0/0:40:40,0:40:1424:0:0:0,-12.0412,-128.432	0/0:31:29,0:29:1044:0:0:0,-8.72987,-93.915	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.919	0/1:17:5,12:5:180:12:432:-34.1037,0,-11.4346	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.965	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:6:4,2:4:144:2:72:-5.0171,0,-11.5049	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.252	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:14:6,8:6:216:8:288:-22.0526,0,-15.5761	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0717	0/1:96:44,52:44:1572:52:1868:-139.445,0,-112.873	.:.:.:.:.:.:.:.	0/0:135:135,0:135:4829:0:0:0,-40.639,-434.763	0/1:134:37,97:37:1313:97:3465:-271.518,0,-77.9041	0/0:58:54,4:54:1917:4:144:0,-4.15245,-159.498	0/1:51:13,38:13:468:38:1368:-108.004,0,-27.1056	0/1:41:16,25:16:576:25:900:-68.1838,0,-39.8328	0/1:63:9,54:9:324:54:1944:-156.204,0,-10.541	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:25:7,18:7:252:18:633:-49.5589,0,-15.5032	0/1:49:23,26:23:824:26:936:-69.761,0,-59.7328	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2824	0/1:35:19,16:19:676:16:572:-41.2062,0,-50.6304	0/1:98:38,60:38:1345:60:2145:-162.584,0,-91.8472	0/1:124:34,90:34:1209:90:3225:-252.847,0,-71.7864	0/0:97:97,0:97:3473:0:0:0,-29.1999,-312.78	0/1:10:2,8:2:72:8:288:-23.2199,0,-3.82642	0/1:74:28,46:28:1000:46:1643:-125.323,0,-68.033	0/1:4:1,3:1:36:3:108:-8.85676,0,-2.39415	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.239	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.976	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.043	0/0:122:122,0:122:4348:0:0:0,-36.7257,-391.496	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.046	0/0:56:56,0:56:1997:0:0:0,-16.8577,-180.002	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/1:96:34,62:34:1205:62:2232:-171.994,0,-79.8517	0/1:92:26,66:26:936:66:2352:-184.054,0,-56.8647	0/0:60:60,0:60:2136:0:0:0,-18.0618,-192.48	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097
chr12	18593900	.	CTGCA	TTGCA,TAGCA	102111	PASS	AB=0.370075,0.622842;ABP=334.229,299.101;AC=144,39;AF=0.774194,0.209677;AN=186;AO=3361,1411;CIGAR=1X4M,2X3M;DP=4818;DPB=4821;DPRA=17.4457,1.17596;EPP=7301.33,3066.96;EPPR=9.52472;GTI=5;LEN=1,2;MEANALT=1.79348,2.31707;MQM=59.9021,56.7782;MQMR=60;NS=93;NUMALT=2;ODDS=1.25841;PAIRED=0,0;PAIREDR=0;PAO=3.25,3.25;PQA=98,98;PQR=0;PRO=0;QA=120287,49660;QR=108;RO=3;RPL=3361,1411;RPP=7301.33,3066.96;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=7301.33,3066.96;SAR=3361,1411;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:26:0,9,17:0:0:9,17:324,594:-74.8322,-48.3912,-45.6819,-26.7966,0,-21.6791	1/2:43:0,9,34:0:0:9,34:324,1218:-125.795,-99.375,-96.6657,-26.7788,0,-16.5438	1/2:68:0,24,44:0:0:24,44:860,1554:-196.409,-126.269,-119.044,-70.4483,0,-57.203	1/1:96:0,96,0:0:0:96,0:3444,0:-310.066,-28.8989,0,-310.066,-28.8989,-310.066	1/2:7:0,3,4:0:0:3,4:108,144:-20.9155,-12.1032,-11.2001,-9.17208,0,-7.96796	1/2:18:0,7,11:0:0:7,11:252,381:-51.8308,-31.2634,-29.1562,-20.9217,0,-17.6104	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/2:81:0,24,57:0:0:24,57:860,2021:-234.352,-164.211,-156.986,-70.4971,0,-53.3384	1/1:36:0,35,0:0:0:35,0:1241,0:-111.633,-10.5361,0,-111.633,-10.5361,-111.633	1/1:101:0,101,0:0:0:101,0:3617,0:-325.446,-30.404,0,-325.446,-30.404,-325.446	1/1:69:0,68,0:0:0:68,0:2444,0:-219.853,-20.47,0,-219.853,-20.47,-219.853	1/1:77:0,76,0:0:0:76,0:2732,0:-245.688,-22.8783,0,-245.688,-22.8783,-245.688	1/1:72:0,72,0:0:0:72,0:2565,0:-231.092,-21.6742,0,-231.092,-21.6742,-231.092	1/1:45:0,45,0:0:0:45,0:1620,0:-146.09,-13.5464,0,-146.09,-13.5464,-146.09	1/1:69:0,67,0:0:0:67,0:2408,0:-216.616,-20.169,0,-216.616,-20.169,-216.616	1/1:57:0,57,0:0:0:57,0:2033,0:-183.24,-17.1587,0,-183.24,-17.1587,-183.24	1/1:34:0,34,0:0:0:34,0:1190,0:-107.401,-10.235,0,-107.401,-10.235,-107.401	1/1:40:0,39,0:0:0:39,0:1404,0:-126.299,-11.7402,0,-126.299,-11.7402,-126.299	1/1:20:0,19,0:0:0:19,0:684,0:-61.5307,-5.71957,0,-61.5307,-5.71957,-61.5307	1/2:57:0,23,33:0:0:23,33:828,1157:-161.667,-94.1016,-87.1779,-67.6659,0,-57.7319	1/2:141:0,52,89:0:0:52,89:1864,3136:-407.305,-255.275,-239.622,-152.337,0,-125.545	1/2:15:0,4,11:0:0:4,11:144,396:-44.3745,-32.6247,-31.4206,-12.1095,0,-8.79817	1/1:43:0,43,0:0:0:43,0:1536,0:-138.533,-12.9443,0,-138.533,-12.9443,-138.533	1/2:44:0,39,5:0:0:39,5:1400,178:-128.834,-14.656,-2.91582,-114.53,0,-113.025	1/1:11:0,11,0:0:0:11,0:392,0:-35.5748,-3.31133,0,-35.5748,-3.31133,-35.5748	1/2:156:0,50,106:0:0:50,106:1763,3686:-443.088,-299.539,-284.488,-143.851,0,-111.942	1/1:80:0,80,0:0:0:80,0:2868,0:-258.357,-24.0824,0,-258.357,-24.0824,-258.357	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	1/2:122:0,48,74:0:0:48,74:1704,2577:-348.673,-209.829,-195.379,-139.196,0,-116.92	1/2:55:0,21,34:0:0:21,34:756,1204:-159.789,-98.101,-91.7794,-62.0456,0,-51.8106	1/2:54:0,46,8:0:0:46,8:1618,262:-153.214,-21.4877,-7.64032,-132.058,0,-129.649	1/2:10:0,4,6:0:0:4,6:144,205:-28.7265,-16.9695,-15.7654,-12.1095,0,-10.3033	1/2:6:0,2,4:0:0:2,4:68,136:-16.8786,-11.3627,-10.7606,-5.85565,0,-4.65153	1/1:4:0,3,0:0:0:3,0:108,0:-9.71547,-0.90309,0,-9.71547,-0.90309,-9.71547	0/1:5:3,1,1:3:108:1,1:36,36:-2.03458,0,-8.5116,-0.00510233,-5.87994,-8.51632	1/2:8:0,2,5:0:0:2,5:72,180:-20.4122,-14.5367,-13.9347,-5.87495,0,-4.3698	1/2:179:0,72,106:0:0:72,106:2577,3743:-514.729,-304.582,-282.908,-210.094,0,-178.185	1/2:38:0,11,25:0:0:11,25:392,869:-102.441,-70.4864,-67.1751,-31.9495,0,-24.4237	1/1:51:0,50,0:0:0:50,0:1796,0:-161.563,-15.0515,0,-161.563,-15.0515,-161.563	0/0:3:0,0,0:0:0:0,0:0,0:0,0,0,0,0,0	1/1:27:0,27,0:0:0:27,0:957,0:-86.3958,-8.12781,0,-86.3958,-8.12781,-86.3958	1/1:22:0,22,0:0:0:22,0:792,0:-71.5192,-6.62266,0,-71.5192,-6.62266,-71.5192	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:69:0,65,0:0:0:65,0:2325,0:-209.148,-19.567,0,-209.148,-19.567,-209.148	1/2:68:0,29,38:0:0:29,38:1044,1353:-195.486,-110.298,-101.568,-85.272,0,-73.8328	1/2:37:0,9,28:0:0:9,28:324,1006:-108.854,-82.4167,-79.7075,-26.7966,0,-18.3677	1/1:24:0,24,0:0:0:24,0:856,0:-77.3602,-7.22472,0,-77.3602,-7.22472,-77.3602	1/1:39:0,39,0:0:0:39,0:1377,0:-124.218,-11.7402,0,-124.218,-11.7402,-124.218	1/1:32:0,32,0:0:0:32,0:1148,0:-103.581,-9.63296,0,-103.581,-9.63296,-103.581	1/1:77:0,77,0:0:0:77,0:2753,0:-248.008,-23.1793,0,-248.008,-23.1793,-248.008	1/2:17:0,5,12:0:0:5,12:180,419:-49.1203,-34.43,-32.9249,-15.0469,0,-11.4346	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:26:0,25,0:0:0:25,0:900,0:-80.9613,-7.52575,0,-80.9613,-7.52575,-80.9613	1/1:17:0,17,0:0:0:17,0:612,0:-55.4101,-5.11751,0,-55.4101,-5.11751,-55.4101	1/2:8:0,5,2:0:0:5,2:180,70:-20.3239,-5.67876,-4.17361,-14.6407,0,-14.0386	1/1:61:0,61,0:0:0:61,0:2188,0:-197.183,-18.3628,0,-197.183,-18.3628,-197.183	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/2:14:0,6,8:0:0:6,8:216,288:-41.4833,-23.8588,-22.0526,-17.9843,0,-15.5761	1/1:7:0,7,0:0:0: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chr12	18647744	.	T	A	41371.9	PASS	AB=0.436327;ABP=215.106;AC=36;AF=0.191489;AN=188;AO=2647;CIGAR=1X;DP=14411;DPB=14411;DPRA=1.21924;EPP=5750.9;EPPR=25541.7;GTI=1;LEN=1;MEANALT=1.02273;MQM=54.0533;MQMR=51.2538;NS=94;NUMALT=1;ODDS=0.123189;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=94091;QR=418102;RO=11761;RPL=0;RPP=5750.9;RPPR=113.334;RPR=2647;RUN=1;SAF=0;SAP=5750.9;SAR=2647;SRF=5494;SRP=113.334;SRR=6267;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:117:53,64:53:1865:64:2275:-168.711,0,-129.275	0/1:110:67,43:67:2383:43:1531:-103.786,0,-174.045	0/1:228:97,131:97:3439:131:4657:-344.355,0,-235.899	0/0:369:369,0:369:13135:0:0:0,-111.08,-1169.54	0/1:149:88,61:88:3136:61:2178:-150.661,0,-234.283	0/1:42:33,9:33:1167:9:315:-15.9706,0,-87.7094	0/0:145:145,0:145:5150:0:0:0,-43.6493,-458.23	0/1:258:142,116:142:5033:116:4138:-292.872,0,-361.329	0/0:185:185,0:185:6567:0:0:0,-55.6905,-581.882	0/0:130:130,0:130:4617:0:0:0,-39.1339,-410.782	0/0:59:59,0:59:2107:0:0:0,-17.7608,-187.663	0/0:157:157,0:157:5582:0:0:0,-47.2617,-490.063	0/0:89:89,0:89:3170:0:0:0,-26.7917,-278.23	0/0:104:104,0:104:3720:0:0:0,-31.3071,-327.098	0/0:110:110,0:110:3900:0:0:0,-33.1133,-345.443	0/0:86:86,0:86:3071:0:0:0,-25.8886,-270.279	0/0:52:52,0:52:1847:0:0:0,-15.6536,-160.951	0/0:57:57,0:57:2032:0:0:0,-17.1587,-178.901	0/0:33:33,0:33:1176:0:0:0,-9.93399,-103.01	0/1:380:223,156:223:7914:156:5529:-381.392,0,-589.521	0/1:284:163,121:163:5774:121:4293:-299.232,0,-426.026	0/1:208:92,116:92:3280:116:4115:-306.756,0,-230.997	0/0:268:268,0:268:9520:0:0:0,-80.676,-844.452	0/0:130:129,1:129:4612:1:36:0,-35.5407,-403.442	0/0:161:160,1:160:5712:1:21:0,-46.3662,-502.296	0/1:375:221,154:221:7824:154:5511:-381.369,0,-586.281	0/0:310:310,0:310:11055:0:0:0,-93.3193,-976.706	0/0:47:47,0:47:1684:0:0:0,-14.1484,-148.313	0/1:418:268,150:268:9518:150:5364:-356.684,0,-724.205	0/1:157:82,75:82:2932:75:2671:-192.764,0,-212.195	0/0:166:160,6:160:5671:6:203:0,-31.3806,-486.033	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:22:22,0:22:783:0:0:0,-6.62266,-69.0245	0/0:17:17,0:17:597:0:0:0,-5.11751,-52.2454	0/1:42:37,5:37:1289:5:180:-3.86719,0,-96.8901	0/1:10:5,5:5:180:5:180:-13.5002,0,-13.0597	0/1:233:159,74:159:5666:74:2635:-166.905,0,-434.491	0/1:206:129,77:129:4566:77:2717:-180.064,0,-342.063	0/0:58:58,0:58:2068:0:0:0,-17.4597,-179.443	0/1:7:2,5:2:72:5:180:-14.355,0,-4.72951	0/0:217:217,0:217:7718:0:0:0,-65.3235,-682	0/0:26:26,0:26:923:0:0:0,-7.82678,-82.014	0/0:343:343,0:343:12225:0:0:0,-103.253,-1088.86	0/0:89:89,0:89:3176:0:0:0,-26.7917,-282.525	0/1:94:63,31:63:2238:31:1097:-70.5779,0,-169.854	0/1:200:121,79:121:4315:79:2819:-193.506,0,-324.577	0/0:296:296,0:296:10523:0:0:0,-89.1049,-919.719	0/0:374:374,0:374:13303:0:0:0,-112.585,-1187.86	0/0:179:177,2:177:6283:2:72:0,-47.0526,-547.663	0/0:180:179,1:179:6389:1:36:0,-50.5897,-563.533	0/1:153:82,71:82:2903:71:2526:-181.248,0,-213.327	0/0:8:8,0:8:275:0:0:0,-2.40824,-24.7013	0/0:191:191,0:191:6794:0:0:0,-57.4967,-597.122	0/0:131:131,0:131:4663:0:0:0,-39.4349,-416.764	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.3448	0/0:294:294,0:294:10398:0:0:0,-88.5028,-920.589	0/0:148:148,0:148:5284:0:0:0,-44.5524,-468.976	0/1:7:4,3:4:144:3:108:-7.93672,0,-11.2064	0/0:23:23,0:23:816:0:0:0,-6.92369,-72.9333	0/0:120:120,0:120:4278:0:0:0,-36.1236,-378.6	0/1:114:73,41:73:2607:41:1464:-97.2486,0,-196.797	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4801	0/0:338:338,0:338:12019:0:0:0,-101.748,-1071.42	0/1:304:182,122:182:6470:122:4372:-300.976,0,-483.527	0/0:109:104,5:104:3703:5:180:0,-16.3743,-311.014	0/1:177:99,78:99:3491:78:2748:-192.761,0,-254.982	0/1:292:149,143:149:5296:143:5101:-370.716,0,-383.031	0/1:180:70,110:70:2504:110:3939:-299.763,0,-168.24	0/0:44:44,0:44:1567:0:0:0,-13.2453,-138.865	0/1:80:44,36:44:1546:36:1242:-85.6891,0,-111.016	0/1:58:37,21:37:1316:21:747:-49.9339,0,-99.9675	0/0:58:58,0:58:2064:0:0:0,-17.4597,-183.882	0/1:117:69,48:69:2439:48:1694:-117.154,0,-179.664	0/1:139:78,61:78:2780:61:2136:-150.208,0,-202.874	0/1:249:128,121:128:4588:121:4272:-307.647,0,-331.496	0/0:287:285,2:285:10114:2:68:0,-79.9413,-892.933	0/1:300:138,162:138:4868:162:5754:-424.076,0,-338.518	0/1:170:98,72:98:3462:72:2563:-178.732,0,-252.901	0/1:4:3,1:3:104:1:36:-2.38511,0,-8.33566	0/0:211:211,0:211:7492:0:0:0,-63.5173,-662.111	0/0:232:232,0:232:8205:0:0:0,-69.839,-721.761	0/0:447:445,0:445:15790:0:0:0,-133.958,-1402.42	0/0:88:88,0:88:3109:0:0:0,-26.4906,-277.609	0/0:91:91,0:91:3260:0:0:0,-27.3937,-289.01	0/0:84:84,0:84:3007:0:0:0,-25.2865,-265.833	0/0:224:223,1:223:7964:1:36:0,-63.835,-701.208	0/0:51:51,0:51:1828:0:0:0,-15.3525,-160.494	0/0:137:137,0:137:4863:0:0:0,-41.2411,-420.855	0/0:132:132,0:132:4698:0:0:0,-39.736,-409.098	0/0:39:39,0:39:1396:0:0:0,-11.7402,-123.82	0/1:68:50,18:50:1780:18:644:-37.4738,0,-136.839	0/1:93:45,48:45:1607:48:1708:-125.878,0,-114.837	0/0:246:246,0:246:8752:0:0:0,-74.0534,-777.573	0/0:182:182,0:182:6451:0:0:0,-54.7875,-572.72
chr12	18647765	.	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chr12	18663852	.	T	C	28925.8	PASS	AB=0.731618;ABP=1016.96;AC=45;AF=0.239362;AN=188;AO=1684;CIGAR=1X;DP=3695;DPB=3695;DPRA=1.98275;EPP=3659.77;EPPR=4350.32;GTI=23;LEN=1;MEANALT=1.02326;MQM=42.3919;MQMR=50.3493;NS=94;NUMALT=1;ODDS=0.0448042;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=59891;QR=71957;RO=2010;RPL=0;RPP=3659.77;RPPR=4350.32;RPR=1684;RUN=1;SAF=0;SAP=3659.77;SAR=1684;SRF=0;SRP=4367.67;SRR=2010;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:44:17,27:17:612:27:968:-69.9664,0,-41.8076	0/1:34:4,30:4:144:30:1076:-83.3992,0,-3.02578	0/1:96:17,79:17:612:79:2824:-213.884,0,-26.1273	0/0:50:50,0:50:1788:0:0:0,-15.0515,-160.493	0/1:46:17,29:17:608:29:1032:-76.268,0,-41.0179	0/1:20:11,9:11:396:9:324:-21.3955,0,-29.6868	0/0:30:30,0:30:1076:0:0:0,-9.0309,-96.7714	0/1:64:7,57:7:248:57:2032:-155.783,0,-3.27211	0/0:25:24,1:24:856:1:36:0,-4.13815,-73.5225	0/0:28:28,0:28:1004:0:0:0,-8.42884,-89.899	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4325	0/0:39:39,0:39:1388:0:0:0,-11.7402,-124.294	0/0:17:17,0:17:612:0:0:0,-5.11751,-54.9793	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3011	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.3844	0/0:26:26,0:26:927:0:0:0,-7.82678,-83.4398	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.4326	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.2322	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.0668	0/1:99:20,79:20:716:79:2832:-219.461,0,-34.7338	0/1:54:8,46:8:288:46:1633:-127.193,0,-9.93791	0/1:111:15,96:15:540:96:3404:-268.824,0,-15.3239	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.032	0/1:38:24,14:24:845:14:504:-32.5193,0,-64.4101	0/0:43:43,0:43:1544:0:0:0,-12.9443,-138.365	0/1:93:26,66:26:936:66:2347:-179.591,0,-56.1822	0/0:89:89,0:89:3192:0:0:0,-26.7917,-286.057	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.2056	0/1:185:54,131:54:1940:131:4677:-358.645,0,-116.291	0/1:35:4,31:4:144:31:1116:-87.5788,0,-2.72187	0/0:39:39,0:39:1400:0:0:0,-11.7402,-125.479	1/1:4:0,4:0:0:4:140:-12.241,-1.20412,0	0/1:23:6,17:6:216:17:599:-45.7352,0,-12.802	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.66675	1/1:2:0,2:0:0:2:72:-6.43644,-0.60206,0	0/1:9:4,5:4:144:5:171:-12.3775,0,-10.5124	0/1:113:26,87:26:932:87:3056:-234.405,0,-49.5982	0/1:72:30,42:30:1076:42:1508:-110.107,0,-75.1839	0/0:12:12,0:12:432:0:0:0,-3.61236,-38.9619	0/1:4:2,2:2:72:2:72:-5.4092,0,-5.6102	0/0:45:45,0:45:1616:0:0:0,-13.5463,-144.614	0/0:8:8,0:8:279:0:0:0,-2.40824,-24.0618	0/0:29:29,0:29:1044:0:0:0,-8.72987,-93.5686	0/0:17:16,1:16:572:1:36:0,-1.5965,-47.5896	0/1:28:10,18:10:360:18:644:-48.6625,0,-24.2171	0/1:69:23,46:23:824:46:1615:-121.91,0,-53.4394	0/0:31:31,0:31:1116:0:0:0,-9.33193,-98.9345	0/0:54:54,0:54:1923:0:0:0,-16.2556,-172.813	0/0:35:35,0:35:1241:0:0:0,-10.536,-110.358	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.0327	0/1:88:41,47:41:1460:47:1670:-121.88,0,-104.666	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.8237	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.004	0/0:18:18,0:18:631:0:0:0,-5.41854,-56.9038	1/1:3:0,3:0:0:3:108:-9.48528,-0.90309,0	0/0:31:31,0:31:1116:0:0:0,-9.33193,-99.9132	0/0:24:24,0:24:852:0:0:0,-7.22472,-76.7868	0/1:5:2,3:2:72:3:100:-7.74051,0,-5.30264	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.06	0/0:21:21,0:21:756:0:0:0,-6.32163,-67.6434	0/1:60:19,41:19:684:41:1449:-109.251,0,-43.4061	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.58648	0/0:86:86,0:86:3084:0:0:0,-25.8886,-276.737	0/1:99:26,73:26:928:73:2582:-196.496,0,-53.6645	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.1874	0/1:33:8,25:8:288:25:882:-68.0404,0,-16.2532	1/1:85:4,81:4:144:81:2895:-242.135,-12.313,0	0/1:117:23,94:23:820:94:3335:-257.941,0,-38.6577	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.6337	0/1:27:6,21:6:212:21:739:-55.2124,0,-11.2354	0/1:29:12,17:12:432:17:608:-45.5142,0,-30.0796	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.8658	0/1:119:29,90:29:1023:90:3227:-240.762,0,-55.1794	0/1:55:13,42:13:468:42:1498:-111.446,0,-25.399	0/1:67:16,51:16:564:51:1818:-137.273,0,-30.784	0/0:54:54,0:54:1925:0:0:0,-16.2556,-172.331	0/1:69:22,47:22:792:47:1661:-122.472,0,-50.1764	0/1:47:8,39:8:288:39:1376:-103.298,0,-11.9955	0/1:4:1,3:1:36:3:108:-8.69702,0,-2.39045	0/0:29:29,0:29:1036:0:0:0,-8.72987,-91.8451	0/0:22:22,0:22:792:0:0:0,-6.62266,-70.8284	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.154	0/0:40:40,0:40:1421:0:0:0,-12.0412,-127.368	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.39	0/0:10:10,0:10:347:0:0:0,-3.0103,-31.1509	0/0:32:32,0:32:1148:0:0:0,-9.63296,-102.905	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.0341	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.2917	0/0:30:30,0:30:1080:0:0:0,-9.0309,-96.8862	0/1:8:7,1:7:243:1:36:-1.07246,0,-19.7346	0/1:56:15,41:15:536:41:1463:-111.571,0,-31.5464	0/1:56:10,46:10:360:46:1618:-125,0,-15.7928	0/0:63:63,0:63:2268:0:0:0,-18.9649,-203.36	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.1813
chr12	18663938	.	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chr12	18712134	.	AGAGAT	AGAGAC,GAAGAC	152078	PASS	AB=0.518155,0.478901;ABP=11.7623,14.8309;AC=147,39;AF=0.790323,0.209677;AN=186;AO=5474,1466;CIGAR=5M1X,2X3M1X;DP=6964;DPB=6964;DPRA=0,1.17429;EPP=11682.1,3160.38;EPPR=0;GTI=0;LEN=1,6;MEANALT=1.69892,2.21951;MQM=60,59.9209;MQMR=0;NS=93;NUMALT=2;ODDS=0.0999476;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=196041,51668;QR=0;RO=0;RPL=24,3;RPP=11682.1,3160.38;RPPR=0;RPR=5450,1463;RUN=1,1;SAF=5474,1466;SAP=11889.7,3186.39;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:31:0,15,16:0:0:15,16:540,568:-90.6991,-46.6355,-42.12,-44.4211,0,-39.6046	1/2:65:0,36,28:0:0:36,28:1292,982:-185.297,-79.9042,-69.0671,-105.387,0,-96.9583	1/2:109:0,54,55:0:0:54,55:1940,1951:-317.573,-159.31,-143.054,-158.621,0,-142.064	1/1:160:0,160,0:0:0:160,0:5740,0:-516.715,-48.1648,0,-516.715,-48.1648,-516.715	1/2:44:0,29,15:0:0:29,15:1032,538:-128.346,-44.2404,-35.5105,-84.4636,0,-79.9482	1/2:28:0,16,12:0:0:16,12:572,423:-81.436,-34.7935,-29.9771,-46.9969,0,-43.3846	1/1:31:0,30,0:0:0:30,0:1072,0:-96.4327,-9.0309,0,-96.4327,-9.0309,-96.4327	1/2:103:0,60,43:0:0:60,43:2156,1520:-300.038,-124.149,-106.087,-176.245,0,-163.301	1/1:101:0,101,0:0:0:101,0:3613,0:-325.374,-30.404,0,-325.374,-30.404,-325.374	1/1:90:0,90,0:0:0:90,0:3211,0:-289.213,-27.0927,0,-289.213,-27.0927,-289.213	1/1:65:0,65,0:0:0:65,0:2340,0:-210.859,-19.567,0,-210.859,-19.567,-210.859	1/1:80:0,79,0:0:0:79,0:2840,0:-255.478,-23.7814,0,-255.478,-23.7814,-255.478	1/1:79:0,79,0:0:0:79,0:2836,0:-255.478,-23.7814,0,-255.478,-23.7814,-255.478	1/1:67:0,67,0:0:0:67,0:2395,0:-215.806,-20.169,0,-215.806,-20.169,-215.806	1/1:78:0,78,0:0:0:78,0:2796,0:-251.88,-23.4803,0,-251.88,-23.4803,-251.88	1/1:37:0,37,0:0:0:37,0:1328,0:-119.822,-11.1381,0,-119.822,-11.1381,-119.822	1/1:33:0,33,0:0:0:33,0:1179,0:-106.417,-9.93399,0,-106.417,-9.93399,-106.417	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/2:172:0,73,98:0:0:73,98:2620,3452:-494.751,-281.035,-259.06,-213.712,0,-184.211	1/2:116:0,73,43:0:0:73,43:2611,1529:-337.865,-124.959,-102.984,-213.262,0,-200.318	1/2:71:0,16,55:0:0:16,55:567,1934:-203.97,-157.779,-152.963,-46.5442,0,-29.9876	1/1:64:0,64,0:0:0:64,0:2287,0:-206.091,-19.2659,0,-206.091,-19.2659,-206.091	1/1:50:0,50,0:0:0:50,0:1787,0:-161.112,-15.0515,0,-161.112,-15.0515,-161.112	1/1:63:0,63,0:0:0:63,0:2242,0:-202.042,-18.9649,0,-202.042,-18.9649,-202.042	1/2:204:0,107,97:0:0:107,97:3836,3411:-590.878,-278.007,-245.797,-313.226,0,-284.026	1/1:137:0,136,0:0:0:136,0:4872,0:-438.273,-40.9401,0,-438.273,-40.9401,-438.273	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/2:127:0,64,63:0:0:64,63:2292,2232:-369.098,-182.178,-162.912,-187.275,0,-168.311	1/2:105:0,51,54:0:0:51,54:1824,1904:-304.116,-155.383,-140.03,-149.089,0,-132.833	1/1:71:0,71,0:0:0:71,0:2517,0:-226.781,-21.3731,0,-226.781,-21.3731,-226.781	1/2:15:0,9,6:0:0:9,6:324,216:-44.4211,-17.9843,-15.2751,-26.7966,0,-24.9904	1/2:19:0,10,9:0:0:10,9:360,319:-55.7194,-26.3423,-23.332,-29.734,0,-27.0247	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:11:0,8,3:0:0:8,3:288,107:-32.5808,-9.07908,-6.67084,-23.8592,0,-22.9561	1/2:24:0,7,17:0:0:7,17:252,610:-70.6777,-50.1154,-48.0082,-20.9217,0,-15.8042	1/2:117:0,69,47:0:0:69,47:2466,1656:-335.886,-134.819,-114.048,-201.062,0,-186.914	1/2:106:0,51,55:0:0:51,55:1832,1942:-307.951,-158.499,-143.146,-149.808,0,-133.252	1/1:50:0,50,0:0:0:50,0:1781,0:-160.571,-15.0515,0,-160.571,-15.0515,-160.571	.:.:.:.:.:.:.:.	1/1:67:0,67,0:0:0:67,0:2408,0:-216.976,-20.169,0,-216.976,-20.169,-216.976	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.12781,-87.7979	1/1:159:0,158,1:0:0:158,1:5667,35:-509.797,-47.5627,0,-506.95,-44.3651,-506.649	1/1:51:0,51,0:0:0:51,0:1832,0:-165.161,-15.3525,0,-165.161,-15.3525,-165.161	1/2:37:0,20,17:0:0:20,17:720,603:-108.234,-49.4827,-43.4621,-59.1082,0,-53.9907	1/2:124:0,66,58:0:0:66,58:2368,2051:-360.538,-167.384,-147.516,-193.51,0,-176.05	1/1:132:0,131,1:0:0:131,1:4683,36:-421.271,-39.4349,0,-418.334,-36.1377,-418.033	1/1:142:0,142,0:0:0:142,0:5080,0:-457.342,-42.7463,0,-457.342,-42.7463,-457.342	1/1:51:0,51,0:0:0:51,0:1811,0:-163.271,-15.3525,0,-163.271,-15.3525,-163.271	1/1:80:0,80,0:0:0:80,0:2863,0:-257.907,-24.0824,0,-257.907,-24.0824,-257.907	1/2:58:0,11,47:0:0:11,47:392,1664:-167.853,-135.9,-132.588,-32.3087,0,-18.1603	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/1:135:0,135,0:0:0:135,0:4848,0:-436.472,-40.6391,0,-436.472,-40.6391,-436.472	1/1:81:0,80,0:0:0:80,0:2847,0:-256.217,-24.0824,0,-256.217,-24.0824,-256.217	1/2:12:0,6,5:0:0:6,5:216,174:-31.8211,-14.1868,-12.3806,-17.674,0,-16.1688	1/1:113:0,112,0:0:0:112,0:4007,0:-360.499,-33.7154,0,-360.499,-33.7154,-360.499	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:14:0,12,2:0:0:12,2:428,72:-41.1218,-6.23466,-2.6223,-35.2464,0,-34.6444	1/1: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chr12	18749657	.	C	T	63317.9	PASS	AB=0.471863;ABP=17.9181;AC=148;AF=0.787234;AN=188;AO=3074;CIGAR=1X;DP=4230;DPB=4230;DPRA=22.7312;EPP=6678.12;EPPR=2504.55;GTI=7;LEN=1;MEANALT=1;MQM=55.0677;MQMR=59.9723;NS=94;NUMALT=1;ODDS=0.384896;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109981;QR=41312;RO=1156;RPL=0;RPP=6678.12;RPPR=2513.23;RPR=3074;RUN=1;SAF=0;SAP=6678.12;SAR=3074;SRF=1;SRP=2504.55;SRR=1155;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:15,20:15:540:20:701:-52.8661,0,-38.4005	0/1:55:33,22:33:1180:22:774:-53.2471,0,-89.9514	0/1:53:26,27:26:936:27:968:-71.3226,0,-68.4749	1/1:61:0,61:0:0:61:2188:-194.073,-18.3628,0	0/1:56:26,30:26:917:30:1076:-79.8688,0,-65.9869	0/1:33:17,16:17:612:16:576:-42.2386,0,-45.4794	1/1:64:0,64:0:0:64:2284:-205.002,-19.2659,0	0/1:54:29,25:29:1025:25:896:-64.7024,0,-76.3051	1/1:74:0,74:0:0:74:2649:-237.221,-22.2762,0	1/1:38:0,38:0:0:38:1368:-122.695,-11.4391,0	1/1:12:0,12:0:0:12:432:-39.1069,-3.61236,0	1/1:14:0,14:0:0:14:500:-45.1777,-4.21442,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:31:0,31:0:0:31:1112:-99.8655,-9.33193,0	1/1:10:0,10:0:0:10:358:-31.7492,-3.0103,0	1/1:14:0,14:0:0:14:504:-45.4502,-4.21442,0	1/1:12:0,12:0:0:12:432:-38.9039,-3.61236,0	1/1:10:0,10:0:0:10:356:-31.3517,-3.0103,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:85:49,36:49:1752:36:1296:-90.1074,0,-132.375	0/1:69:31,38:31:1104:38:1368:-102.13,0,-78.8996	0/1:66:43,23:43:1548:23:809:-52.2435,0,-119.745	1/1:50:0,50:0:0:50:1796:-159.295,-15.0515,0	1/1:96:8,88:8:284:88:3160:-256.983,-2.99553,0	1/1:68:0,68:0:0:68:2432:-218.47,-20.47,0	0/1:162:95,67:95:3404:67:2400:-167.144,0,-257.806	1/1:118:0,118:0:0:118:4187:-375.109,-35.5215,0	1/1:5:0,5:0:0:5:176:-16.0936,-1.50515,0	0/1:110:60,50:60:2152:50:1792:-126.63,0,-160.834	0/1:75:38,37:38:1364:37:1325:-96.4175,0,-100.483	1/1:63:0,63:0:0:63:2255:-201.987,-18.9649,0	0/1:10:5,5:5:180:5:180:-13.4732,0,-13.5418	0/1:15:8,7:8:273:7:252:-18.4393,0,-20.3847	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:86:40,46:40:1432:46:1633:-120.473,0,-103.289	0/1:124:68,56:68:2424:56:1997:-141.979,0,-181.089	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:2:0,2:0:0:2:72:-6.65513,-0.60206,0	1/1:39:0,39:0:0:39:1400:-125.784,-11.7402,0	1/1:14:0,14:0:0:14:504:-45.5629,-4.21442,0	1/1:83:0,83:0:0:83:2966:-263.95,-24.9855,0	1/1:20:0,20:0:0:20:720:-64.9085,-6.0206,0	0/1:11:7,4:7:244:4:144:-10.0023,0,-18.9881	0/1:60:30,30:30:1057:30:1076:-78.9309,0,-77.3772	1/1:48:0,48:0:0:48:1714:-153.074,-14.4494,0	1/1:71:0,71:0:0:71:2548:-228.472,-21.3731,0	1/1:77:0,77:0:0:77:2751:-246.577,-23.1793,0	1/1:45:0,45:0:0:45:1616:-145.185,-13.5464,0	0/1:148:75,73:75:2673:73:2604:-188.43,0,-196.262	1/1:4:0,4:0:0:4:144:-13.2845,-1.20412,0	1/1:57:0,57:0:0:57:2047:-184.153,-17.1587,0	1/1:17:0,17:0:0:17:612:-55.2552,-5.11751,0	0/1:16:4,12:4:140:12:419:-33.1381,0,-8.1281	1/1:38:0,38:0:0:38:1352:-121.617,-11.4391,0	1/1:22:0,22:0:0:22:792:-71.3495,-6.62266,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	1/1:11:0,11:0:0:11:391:-34.4245,-3.31133,0	1/1:77:0,77:0:0:77:2760:-245.701,-23.1793,0	0/1:51:34,17:34:1220:17:608:-39.5454,0,-94.7543	1/1:2:0,2:0:0:2:72:-6.77694,-0.60206,0	1/1:49:0,49:0:0:49:1748:-157.333,-14.7505,0	0/1:112:63,49:63:2260:49:1752:-123.557,0,-169.945	0/1:43:4,39:4:144:39:1396:-111.35,0,-0.369327	0/1:39:17,22:17:608:22:788:-57.4925,0,-43.3119	0/1:69:43,26:43:1533:26:932:-63.017,0,-117.49	0/1:38:21,17:21:752:17:605:-42.9601,0,-56.5671	1/1:5:0,5:0:0:5:180:-16.5292,-1.50515,0	0/1:39:19,20:19:680:20:720:-51.5278,0,-49.789	0/1:53:25,28:25:900:28:1004:-74.4033,0,-65.3664	1/1:24:0,24:0:0:24:860:-77.154,-7.22472,0	0/1:90:50,40:50:1773:40:1436:-102.445,0,-132.758	0/1:18:11,7:11:396:7:252:-17.6104,0,-30.5642	0/1:113:52,61:52:1864:61:2170:-160.436,0,-134.023	1/1:49:0,49:0:0:49:1756:-155.412,-14.7505,0	0/1:86:56,30:56:1997:30:1080:-71.4645,0,-154.113	0/1:31:14,17:14:504:17:612:-45.2212,0,-36.3662	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:42:1,41:1:36:41:1476:-129.022,-9.04499,0	1/1:32:0,32:0:0:32:1152:-103.99,-9.63296,0	1/1:159:0,159:0:0:159:5632:-504.689,-47.8638,0	1/1:52:0,52:0:0:52:1872:-168.062,-15.6536,0	1/1:10:0,10:0:0:10:360:-32.6298,-3.0103,0	1/1:20:0,20:0:0:20:720:-64.901,-6.0206,0	1/1:45:0,45:0:0:45:1616:-145.077,-13.5464,0	1/1:22:0,22:0:0:22:792:-71.4477,-6.62266,0	1/1:30:0,30:0:0:30:1080:-97.1977,-9.0309,0	1/1:22:0,22:0:0:22:792:-70.3542,-6.62266,0	1/1:7:0,7:0:0:7:248:-22.6096,-2.10721,0	0/1:29:16,13:16:576:13:460:-32.8836,0,-43.4451	0/1:10:6,4:6:216:4:144:-10.2451,0,-16.7802	1/1:57:0,57:0:0:57:2038:-182.638,-17.1587,0	1/1:33:0,33:0:0:33:1184:-106.381,-9.93399,0
chr12	18750797	.	A	T	7922.49	PASS	AB=0.328575;ABP=1111.56;AC=88;AF=0.468085;AN=188;AO=1443;CIGAR=1X;DP=4543;DPB=4543;DPRA=14.087;EPP=3136.44;EPPR=6732.4;GTI=28;LEN=1;MEANALT=1.01087;MQM=27.8413;MQMR=59.9368;NS=94;NUMALT=1;ODDS=0.0421382;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51545;QR=110585;RO=3099;RPL=0;RPP=3136.44;RPPR=6732.4;RPR=1443;RUN=1;SAF=0;SAP=3136.44;SAR=1443;SRF=0;SRP=6732.4;SRR=3099;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:37:35,2:35:1252:2:72:0,-6.45099,-108.298	0/1:30:24,6:24:864:6:216:-4.53708,0,-69.0517	0/1:145:106,39:106:3788:39:1400:-43.3085,0,-297.467	0/1:95:65,30:65:2317:30:1057:-46.7729,0,-180.191	0/1:27:20,7:20:711:7:252:-8.5006,0,-56.1878	0/1:29:24,5:24:860:5:180:-3.65876,0,-68.992	0/1:44:38,6:38:1351:6:212:-2.1036,0,-108.644	0/1:71:48,23:48:1685:23:820:-30.5592,0,-130.558	0/1:72:60,12:60:2160:12:428:-4.65812,0,-172.964	0/1:25:17,8:17:612:8:288:-13.6172,0,-47.8873	0/1:38:15,23:15:523:23:811:-47.5236,0,-35.9593	0/1:67:33,34:33:1171:34:1224:-55.0898,0,-85.4332	0/1:60:34,26:34:1216:26:936:-38.8767,0,-91.615	0/1:25:13,12:13:468:12:428:-21.5929,0,-34.9339	0/1:43:23,20:23:820:20:720:-38.5469,0,-61.1782	0/1:32:25,7:25:896:7:252:-6.98584,0,-71.3274	0/1:31:15,16:15:536:16:559:-26.3312,0,-39.242	0/1:12:4,8:4:144:8:288:-14.396,0,-9.70126	0/1:22:13,9:13:464:9:324:-13.6002,0,-35.4748	0/1:83:67,16:67:2412:16:566:-14.3623,0,-192.35	0/1:95:72,23:72:2568:23:828:-27.4528,0,-202.77	0/1:62:38,24:38:1368:24:849:-41.8443,0,-104.757	0/1:38:27,11:27:964:11:396:-17.4782,0,-75.6373	0/1:24:16,8:16:576:8:288:-12.1101,0,-44.9503	0/0:43:41,2:41:1472:2:72:0,-7.91195,-127.742	0/1:105:81,24:81:2888:24:864:-29.8377,0,-228.546	0/1:97:81,16:81:2891:16:567:-9.8396,0,-231.218	0/1:25:12,13:12:432:13:468:-23.5628,0,-31.6954	0/1:165:106,59:106:3785:59:2078:-96.0844,0,-291.178	0/1:59:36,23:36:1274:23:813:-37.1125,0,-97.2007	0/1:42:34,8:34:1220:8:280:-7.69555,0,-97.4635	0/1:5:3,2:3:108:2:72:-3.52719,0,-8.57002	0/1:8:6,2:6:216:2:72:-2.45149,0,-17.3823	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:6,1:6:216:1:36:-0.359696,0,-17.6833	0/1:8:3,5:3:108:5:180:-8.93953,0,-7.66693	0/1:136:66,69:66:2350:69:2476:-135.515,0,-170.845	0/1:75:59,16:59:2112:16:553:-14.7393,0,-167.772	0/1:32:17,15:17:597:15:525:-23.2827,0,-44.4231	0/1:4:2,2:2:72:2:72:-3.82822,0,-5.6326	0/1:55:35,20:35:1252:20:705:-30.0915,0,-96.4261	0/1:32:18,14:18:630:14:500:-23.9428,0,-47.3917	0/1:69:56,13:56:2000:13:456:-9.27171,0,-159.474	0/1:51:34,17:34:1211:17:612:-28.9011,0,-93.943	0/1:40:23,17:23:820:17:612:-30.0237,0,-62.0813	0/1:94:78,16:78:2804:16:576:-11.6774,0,-224.302	0/1:62:46,16:46:1625:16:576:-16.7616,0,-127.873	0/1:120:100,20:100:3575:20:720:-15.1666,0,-285.832	0/1:33:27,6:27:964:6:216:-5.50415,0,-77.1428	0/1:31:19,12:19:676:12:432:-19.3282,0,-51.8361	0/1:78:51,27:51:1800:27:961:-46.423,0,-138.799	0/1:6:3,3:3:108:3:108:-6.09285,0,-8.26899	0/1:32:20,12:20:716:12:432:-17.3116,0,-55.1341	0/1:12:10,2:10:360:2:72:-1.74769,0,-29.1319	0/1:11:9,2:9:320:2:72:-1.37579,0,-25.831	0/1:47:36,11:36:1277:11:396:-12.1724,0,-101.082	0/0:17:16,1:16:572:1:36:0,-2.29643,-48.9923	0/1:5:4,1:4:140:1:36:-1.31593,0,-11.4394	0/1:15:12,3:12:428:3:108:-2.42429,0,-34.3434	0/1:30:16,14:16:576:14:504:-22.8685,0,-43.1303	0/1:70:27,43:27:964:43:1532:-84.0687,0,-66.0047	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:67:33,34:33:1179:34:1205:-64.5582,0,-86.2482	0/1:76:60,16:60:2160:16:572:-18.1263,0,-171.788	0/1:29:16,13:16:576:13:464:-20.6893,0,-43.4451	0/1:36:24,12:24:864:12:432:-20.462,0,-67.2455	0/1:100:80,20:80:2860:20:716:-20.7937,0,-227.045	0/1:63:53,10:53:1891:10:356:-7.16866,0,-151.447	0/1:20:10,10:10:360:10:360:-16.5059,0,-26.7237	0/1:17:14,3:14:504:3:108:-1.78983,0,-40.5806	0/1:39:20,19:20:716:19:684:-37.6918,0,-53.0275	0/1:3:2,1:2:72:1:36:-1.91799,0,-5.93363	0/0:96:85,11:85:3048:11:396:0,-4.48778,-250.138	0/1:38:29,9:29:1040:9:320:-9.21603,0,-82.4752	0/1:69:45,24:45:1582:24:845:-36.9176,0,-121.898	0/1:68:51,17:51:1811:17:612:-23.6787,0,-142.801	0/1:73:54,19:54:1925:19:680:-19.9871,0,-151.55	0/1:44:24,20:24:849:20:712:-31.0662,0,-63.4825	0/1:10:8,2:8:288:2:72:-1.67682,0,-23.2571	0/1:46:27,19:27:938:19:680:-31.1039,0,-70.8757	0/1:65:45,20:45:1603:20:716:-26.16,0,-124.992	0/1:110:97,13:97:3469:13:468:-0.0188999,0,-279.307	0/1:52:28,24:28:992:24:864:-46.1899,0,-73.9393	0/1:24:11,13:11:388:13:468:-26.064,0,-28.0326	0/1:24:9,15:9:324:15:540:-30.5636,0,-22.2811	0/1:84:42,42:42:1481:42:1508:-79.2648,0,-108.258	0/1:22:11,11:11:396:11:396:-17.7884,0,-29.3601	0/1:60:28,32:28:981:32:1140:-52.9775,0,-70.539	0/1:56:27,29:27:968:29:1040:-47.5156,0,-70.5797	0/1:17:10,7:10:360:7:252:-11.6674,0,-27.6268	0/1:56:35,21:35:1251:21:756:-31.7347,0,-96.0366	0/1:65:39,26:39:1384:26:928:-45.0991,0,-105.292	0/1:26:19,7:19:684:7:252:-10.2281,0,-54.0635	0/1:53:31,22:31:1104:22:783:-36.7392,0,-83.716
chr12	18750803	.	G	A	7913.22	PASS	AB=0.330993;ABP=1062.89;AC=88;AF=0.468085;AN=188;AO=1442;CIGAR=1X;DP=4568;DPB=4568;DPRA=14.1646;EPP=3134.27;EPPR=6762.83;GTI=29;LEN=1;MEANALT=1.01087;MQM=27.9286;MQMR=59.9386;NS=94;NUMALT=1;ODDS=0.367535;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51404;QR=110965;RO=3125;RPL=0;RPP=3134.27;RPPR=6762.83;RPR=1442;RUN=1;SAF=0;SAP=3134.27;SAR=1442;SRF=0;SRP=6788.86;SRR=3125;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:38:36,2:36:1280:2:72:0,-6.75202,-110.816	0/1:29:23,6:23:824:6:216:-4.83811,0,-65.7534	0/1:148:108,40:108:3864:40:1419:-44.3817,0,-303.403	0/1:90:61,29:61:2153:29:1044:-46.4574,0,-166.941	0/1:27:20,7:20:716:7:252:-8.5006,0,-56.6399	0/1:29:24,5:24:851:5:180:-3.65876,0,-68.1796	0/1:46:40,6:40:1428:6:216:-1.59076,0,-114.97	0/1:74:52,22:52:1851:22:792:-27.8377,0,-144.593	0/1:73:61,12:61:2156:12:428:-4.35709,0,-172.302	0/1:25:17,8:17:612:8:288:-13.6172,0,-47.8873	0/1:41:17,24:17:590:24:847:-49.6458,0,-41.0819	0/1:66:32,34:32:1111:34:1216:-55.3223,0,-80.331	0/1:61:34,27:34:1199:27:963:-41.1852,0,-89.7822	0/1:24:13,11:13:464:11:378:-18.9581,0,-34.8728	0/1:44:23,21:23:813:21:752:-40.6967,0,-60.2438	0/1:32:26,6:26:894:6:212:-4.70571,0,-71.1359	0/1:30:15,15:15:536:15:519:-24.3705,0,-39.543	0/1:10:4,6:4:144:6:212:-10.5158,0,-10.3033	0/1:22:13,9:13:460:9:324:-13.6002,0,-35.1127	0/1:82:67,15:67:2400:15:540:-13.6822,0,-191.572	0/1:99:76,23:76:2698:23:813:-25.6652,0,-213.262	0/1:61:37,24:37:1324:24:856:-42.6786,0,-101.099	0/1:39:28,11:28:985:11:396:-17.1772,0,-77.221	0/1:24:16,8:16:557:8:288:-12.1101,0,-43.2308	0/0:43:40,3:40:1428:3:93:0,-6.13042,-122.002	0/1:105:82,23:82:2923:23:823:-27.2139,0,-231.697	0/1:96:80,16:80:2832:16:561:-9.78172,0,-226.215	0/1:24:11,13:11:392:13:447:-23.4732,0,-28.3953	0/1:165:105,60:105:3757:60:2145:-100.657,0,-288.658	0/1:60:37,23:37:1324:23:804:-36.5861,0,-101.4	0/1:43:35,8:35:1256:8:288:-7.57215,0,-100.401	0/1:6:4,2:4:140:2:68:-3.16182,0,-11.1384	0/1:8:6,2:6:216:2:68:-2.40809,0,-17.3823	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:7:6,1:6:216:1:36:-0.359696,0,-17.6833	0/1:9:4,5:4:144:5:180:-8.6385,0,-10.6043	0/1:137:69,68:69:2440:68:2406:-131.438,0,-178.613	0/1:74:59,15:59:2099:15:532:-13.2078,0,-166.901	0/1:32:17,15:17:593:15:536:-23.705,0,-44.0617	0/1:3:2,1:2:72:1:36:-1.74551,0,-5.93363	0/1:54:34,20:34:1224:20:720:-30.9764,0,-94.2091	0/1:32:18,14:18:615:14:500:-23.9428,0,-46.0348	0/1:66:54,12:54:1928:12:428:-7.84354,0,-153.929	0/1:52:35,17:35:1191:17:608:-28.3005,0,-91.8321	0/1:40:23,17:23:811:17:612:-30.0237,0,-61.2688	0/1:98:80,17:80:2856:17:603:-12.6568,0,-227.719	0/1:62:46,16:46:1629:16:568:-16.6788,0,-128.233	0/1:119:98,21:98:3473:21:752:-18.6201,0,-276.96	0/1:32:26,6:26:936:6:206:-5.57995,0,-74.9265	0/1:34:19,15:19:665:15:540:-26.0458,0,-49.9378	0/1:75:49,26:49:1752:26:906:-43.9184,0,-135.387	0/1:6:3,3:3:108:3:108:-6.09285,0,-8.26899	0/1:31:19,12:19:680:12:432:-17.6126,0,-52.1957	0/1:12:10,2:10:360:2:72:-1.74769,0,-29.1319	0/1:12:10,2:10:360:2:72:-1.07476,0,-29.1319	0/1:48:36,12:36:1270:12:428:-15.0564,0,-100.151	0/1:17:15,2:15:523:2:72:-0.242545,0,-42.2809	0/1:5:4,1:4:144:1:36:-1.31593,0,-11.8085	0/1:15:12,3:12:432:3:108:-2.42429,0,-34.7057	0/1:33:19,14:19:680:14:504:-21.9654,0,-51.5676	0/1:72:29,43:29:1026:43:1540:-83.6156,0,-70.9772	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:66:32,34:32:1125:34:1215:-65.6157,0,-81.688	0/1:77:62,15:62:2203:15:536:-15.4564,0,-175.356	0/1:31:18,13:18:644:13:468:-19.9337,0,-48.9587	0/1:36:24,12:24:860:12:432:-20.462,0,-66.8848	0/1:98:78,20:78:2773:20:716:-21.3957,0,-219.819	0/1:62:52,10:52:1859:10:360:-7.55827,0,-148.869	0/1:20:10,10:10:360:10:360:-16.5059,0,-26.7237	0/1:17:14,3:14:500:3:108:-1.78983,0,-40.2187	0/1:39:20,19:20:705:19:676:-37.2425,0,-52.0326	0/1:3:2,1:2:72:1:36:-1.91799,0,-5.93363	0/0:100:89,11:89:3119:11:396:0,-5.6919,-256.522	0/1:39:30,9:30:1076:9:324:-8.95663,0,-85.4045	0/1:69:45,24:45:1584:24:864:-37.5622,0,-122.077	0/1:72:55,17:55:1972:17:608:-22.3864,0,-156.081	0/1:73:54,19:54:1904:19:680:-19.9871,0,-149.66	0/1:44:24,20:24:856:20:720:-31.1489,0,-64.1158	0/1:10:8,2:8:288:2:72:-1.67682,0,-23.2571	0/1:45:27,18:27:963:18:648:-29.0823,0,-73.435	0/1:66:45,21:45:1599:21:752:-28.5438,0,-124.331	0/0:108:96,12:96:3419:12:432:0,-1.91812,-277.332	0/1:52:27,25:27:960:25:900:-48.7287,0,-71.0612	0/1:24:11,13:11:387:13:460:-25.8873,0,-27.9412	0/1:24:10,14:10:360:14:492:-27.8257,0,-25.5196	0/1:84:42,42:42:1485:42:1504:-80.5514,0,-108.617	0/1:22:11,11:11:396:11:396:-17.7884,0,-29.3601	0/1:61:30,31:30:1063:31:1112:-50.4703,0,-77.618	0/1:58:28,30:28:989:30:1060:-49.7367,0,-71.8623	0/1:17:10,7:10:360:7:252:-11.6674,0,-27.6268	0/1:58:36,22:36:1283:22:779:-33.1294,0,-98.3129	0/1:65:39,26:39:1382:26:932:-45.1871,0,-105.11	0/1:27:19,8:19:667:8:288:-12.6791,0,-52.2268	0/1:53:31,22:31:1095:22:765:-36.2924,0,-82.9045
chr12	18750812	.	A	G	8789.2	PASS	AB=0.329777;ABP=1088.26;AC=88;AF=0.468085;AN=188;AO=1439;CIGAR=1X;DP=4514;DPB=4514;DPRA=13.9969;EPP=2964.91;EPPR=6092.24;GTI=29;LEN=1;MEANALT=1.01087;MQM=27.8909;MQMR=59.9278;NS=94;NUMALT=1;ODDS=0.302325;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51463;QR=109717;RO=3074;RPL=1420;RPP=2964.91;RPPR=6092.24;RPR=19;RUN=1;SAF=0;SAP=3127.76;SAR=1439;SRF=0;SRP=6678.12;SRR=3074;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:37,2:37:1317:2:68:0,-7.09645,-114.186	0/1:30:24,6:24:864:6:216:-4.53708,0,-69.0517	0/1:143:104,39:104:3706:39:1400:-43.9105,0,-290.692	0/1:92:63,29:63:2256:29:1043:-45.8417,0,-175.608	0/1:27:20,7:20:705:7:248:-8.49886,0,-55.645	0/1:29:24,5:24:852:5:180:-3.65876,0,-68.2705	0/1:45:39,6:39:1387:6:216:-1.89179,0,-111.582	0/1:71:49,22:49:1764:22:788:-28.6994,0,-137.67	0/1:73:60,13:60:2129:13:456:-6.49476,0,-169.873	0/1:25:17,8:17:608:8:288:-13.6172,0,-47.5259	0/1:41:18,23:18:625:23:819:-47.4122,0,-44.2303	0/1:66:33,33:33:1173:33:1170:-52.8299,0,-85.9131	0/1:61:35,26:35:1256:26:915:-38.0614,0,-94.9127	0/1:25:13,12:13:468:12:413:-21.0068,0,-34.9339	0/1:45:23,22:23:820:22:787:-42.9209,0,-60.5762	0/1:32:25,6:25:896:6:216:-4.8,0,-71.355	0/1:30:15,15:15:536:15:536:-24.6155,0,-39.543	0/1:12:4,8:4:144:8:288:-14.396,0,-9.70126	0/1:21:12,9:12:428:9:324:-13.9012,0,-32.5372	0/1:82:66,16:66:2359:16:572:-14.7527,0,-187.884	0/1:93:70,23:70:2520:23:828:-28.0549,0,-199.055	0/1:61:37,24:37:1328:24:855:-42.5534,0,-101.459	0/1:38:27,11:27:972:11:396:-17.4782,0,-76.3584	0/1:23:15,8:15:540:8:288:-12.4111,0,-42.0128	0/0:40:38,2:38:1356:2:72:0,-7.00886,-117.307	0/1:106:82,24:82:2936:24:864:-29.5367,0,-232.565	0/1:95:80,15:80:2849:15:532:-8.16135,0,-228.049	0/1:25:12,13:12:432:13:460:-23.4399,0,-31.6954	0/1:162:103,59:103:3665:59:2093:-96.9896,0,-281.287	0/1:60:36,24:36:1269:24:856:-40.2153,0,-96.2213	0/1:41:34,7:34:1209:7:252:-5.63509,0,-96.7719	0/1:6:4,2:4:144:2:72:-3.22616,0,-11.5074	0/1:8:6,2:6:216:2:68:-2.40809,0,-17.3823	0/0:6:6,0:6:193:0:0:0,-1.80618,-17.6856	0/1:7:6,1:6:216:1:36:-0.359696,0,-17.6833	0/1:9:4,5:4:125:5:180:-8.6385,0,-8.84935	0/1:134:64,70:64:2283:70:2508:-138.356,0,-165.393	0/1:73:57,16:57:2029:16:565:-15.6087,0,-160.904	0/1:32:17,15:17:612:15:540:-23.7465,0,-45.7805	0/1:4:2,2:2:72:2:72:-3.82822,0,-5.6326	0/1:53:34,19:34:1220:19:680:-27.808,0,-94.1499	0/1:32:18,14:18:644:14:504:-24.0043,0,-48.6576	0/1:67:55,12:55:1972:12:428:-8.09405,0,-157.557	0/1:49:33,16:33:1176:16:576:-26.1552,0,-91.3973	0/1:40:23,17:23:805:17:612:-30.0237,0,-60.7263	0/1:92:77,15:77:2756:15:540:-9.74007,0,-220.586	0/1:61:45,16:45:1616:16:567:-16.9006,0,-127.361	0/1:120:100,20:100:3568:20:703:-14.6024,0,-285.203	0/1:32:26,6:26:932:6:216:-5.80518,0,-74.5659	0/1:32:18,14:18:644:14:500:-24.0195,0,-48.6576	0/1:76:50,26:50:1792:26:932:-44.5417,0,-138.684	0/1:6:3,3:3:108:3:108:-6.09285,0,-8.26899	0/1:33:20,13:20:712:13:464:-19.1892,0,-54.472	0/1:12:10,2:10:360:2:72:-1.74769,0,-29.1319	0/1:12:10,2:10:352:2:72:-1.07476,0,-28.4058	0/1:46:36,10:36:1288:10:360:-10.9537,0,-102.376	0/0:18:16,2:16:568:2:72:0,-0.0584854,-46.0918	0/1:5:4,1:4:144:1:36:-1.31593,0,-11.8085	0/1:15:12,3:12:413:3:108:-2.42429,0,-32.9824	0/1:32:19,13:19:684:13:464:-20.302,0,-52.2298	0/1:71:29,42:29:1035:42:1512:-82.9906,0,-72.0899	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:62:29,33:29:1025:33:1188:-64.3205,0,-73.8968	0/1:77:60,17:60:2137:17:608:-20.7732,0,-169.417	0/1:31:17,14:17:612:14:500:-22.2772,0,-46.0815	0/1:35:24,11:24:860:11:396:-18.2245,0,-67.1858	0/1:97:78,19:78:2792:19:669:-18.5357,0,-221.83	0/1:63:53,10:53:1872:10:356:-7.16866,0,-149.784	0/1:20:10,10:10:360:10:360:-16.5059,0,-26.7237	0/1:17:14,3:14:504:3:108:-1.78983,0,-40.5806	0/1:40:19,21:19:684:21:752:-42.4592,0,-49.8491	0/1:3:2,1:2:72:1:32:-1.82066,0,-5.93363	0/0:98:87,11:87:3082:11:392:0,-5.13138,-253.237	0/1:36:27,9:27:968:9:324:-9.85972,0,-76.6003	0/1:70:45,25:45:1616:25:896:-39.5835,0,-124.658	0/1:69:53,16:53:1885:16:576:-20.8389,0,-149.156	0/1:72:53,19:53:1889:19:680:-20.3075,0,-148.612	0/1:42:22,20:22:784:20:720:-31.7509,0,-58.2407	0/1:10:8,2:8:284:2:72:-1.67682,0,-22.8931	0/1:44:27,17:27:968:17:612:-28.4034,0,-74.1887	0/1:64:44,20:44:1572:20:720:-26.9674,0,-122.506	0/1:109:96,13:96:3432:13:468:-0.31993,0,-276.282	0/1:51:26,25:26:932:25:900:-49.0298,0,-68.8448	0/1:24:11,13:11:392:13:468:-26.064,0,-28.3953	0/1:24:10,14:10:360:14:500:-28.0023,0,-25.5196	0/1:83:40,43:40:1436:43:1529:-81.9584,0,-104.513	0/1:21:11,10:11:392:10:356:-15.8469,0,-29.2984	0/1:58:28,30:28:1004:30:1080:-49.3449,0,-73.2161	0/1:57:27,30:27:955:30:1071:-49.9656,0,-69.1061	0/1:17:10,7:10:356:7:252:-11.6674,0,-27.2637	0/1:58:35,23:35:1252:23:824:-35.6753,0,-95.5253	0/1:64:38,26:38:1364:26:936:-45.5761,0,-103.795	0/1:27:19,8:19:680:8:288:-12.6791,0,-53.4014	0/1:54:31,23:31:1112:23:824:-39.1912,0,-84.1357
chr12	18750815	.	C	T	37236.6	PASS	AB=0.461344;ABP=59.4186;AC=98;AF=0.521277;AN=188;AO=2189;CIGAR=1X;DP=4556;DPB=4556;DPRA=12.2366;EPP=4644.12;EPPR=5108.18;GTI=8;LEN=1;MEANALT=1.04301;MQM=59.841;MQMR=40.7287;NS=94;NUMALT=1;ODDS=1.1982;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=78455;QR=84370;RO=2363;RPL=2176;RPP=4644.12;RPPR=5108.18;RPR=13;RUN=1;SAF=0;SAP=4756.36;SAR=2189;SRF=0;SRP=5134.2;SRR=2363;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:40:20,20:20:720:20:712:-52.3655,0,-51.0398	0/1:30:22,8:22:792:8:288:-17.2365,0,-56.4345	0/1:143:98,45:98:3487:45:1612:-102.323,0,-234.715	0/1:92:25,67:25:896:67:2396:-186.722,0,-36.0019	0/1:27:21,6:21:756:6:216:-11.6627,0,-53.9055	0/1:29:24,5:24:860:5:180:-7.82219,0,-64.9002	1/1:45:5,39:5:180:39:1392:-112.601,-0.543381,0	0/1:68:55,13:55:1968:13:468:-21.9896,0,-136.518	0/1:72:12,60:12:428:60:2160:-172.964,0,-4.67755	0/1:24:7,17:7:252:17:612:-48.1883,0,-11.7042	0/1:40:22,18:22:784:18:636:-45.5263,0,-44.6252	0/1:65:32,33:32:1144:33:1188:-87.5672,0,-51.4487	0/1:61:27,34:27:964:34:1224:-92.0344,0,-41.4167	0/1:23:11,12:11:381:12:428:-31.9351,0,-19.2864	0/1:45:22,23:22:788:23:820:-60.5762,0,-43.6376	0/1:31:5,25:5:180:25:887:-70.8664,0,-2.90294	0/1:31:16,15:16:572:15:540:-39.6037,0,-26.5346	0/1:12:8,4:8:288:4:144:-9.70126,0,-14.396	0/1:22:9,13:9:324:13:464:-35.4748,0,-13.6002	0/1:82:52,30:52:1864:30:1080:-72.8288,0,-131.038	0/1:95:66,29:66:2351:29:1044:-65.677,0,-166.555	0/1:61:47,14:47:1684:14:504:-27.3353,0,-117.902	0/1:38:10,28:10:351:28:993:-78.2446,0,-14.1223	0/1:24:8,16:8:288:16:572:-44.5887,0,-12.1101	1/1:43:3,40:3:108:40:1429:-121.49,-5.52821,0	0/1:107:74,32:74:2648:32:1152:-71.7211,0,-190.257	0/1:98:16,82:16:576:82:2937:-235.059,0,-9.7644	0/1:24:12,12:12:432:12:432:-31.9965,0,-21.645	0/1:163:114,49:114:4038:49:1752:-108.896,0,-271.638	0/1:61:54,7:54:1928:7:252:-4.66613,0,-136.191	0/1:43:8,35:8:280:35:1256:-100.401,0,-7.39452	0/1:5:3,2:3:104:2:68:-4.95256,0,-6.73409	0/1:8:6,2:6:208:2:72:-4.42848,0,-15.3707	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:7:6,1:6:212:1:36:-1.49107,0,-16.2805	0/1:9:6,3:6:216:3:108:-7.3659,0,-11.8958	0/1:134:100,34:100:3572:34:1224:-70.129,0,-238.459	0/1:74:45,29:45:1608:29:1040:-71.6375,0,-109.768	0/1:32:14,18:14:500:18:648:-49.018,0,-21.4847	0/0:4:4,0:4:136:0:0:0,-1.20412,-11.125	0/1:57:21,36:21:752:36:1281:-98.3605,0,-32.2515	0/1:33:14,19:14:500:19:680:-50.3141,0,-23.6418	0/1:68:12,56:12:432:56:2008:-160.523,0,-7.25569	0/1:53:18,35:18:648:35:1256:-97.3907,0,-30.8378	0/1:40:26,14:26:928:14:504:-33.6569,0,-58.7511	0/1:97:63,34:63:2264:34:1220:-80.9053,0,-161.984	0/1:60:15,45:15:527:45:1620:-128.028,0,-15.2846	0/1:123:18,105:18:639:105:3756:-301.211,0,-8.63335	0/1:33:6,27:6:208:27:968:-77.5034,0,-5.32571	0/1:32:13,19:13:464:19:684:-52.2574,0,-21.4793	0/1:74:52,22:52:1852:22:788:-48.9686,0,-128.947	0/1:6:3,3:3:108:3:108:-8.26899,0,-6.09285	0/1:33:14,19:14:504:19:676:-51.2325,0,-22.4772	0/1:12:2,10:2:72:10:360:-29.1319,0,-1.74769	0/1:12:10,2:10:351:2:72:-3.22436,0,-26.2552	0/1:49:12,36:12:428:36:1296:-102.134,0,-14.7034	0/1:16:2,14:2:72:14:504:-40.8816,0,-0.543574	0/1:5:1,4:1:36:4:144:-11.8085,0,-1.31593	0/1:15:3,12:3:108:12:432:-34.7057,0,-2.42429	0/1:31:13,18:13:468:18:627:-47.4172,0,-21.4991	0/1:72:58,14:58:2088:14:504:-24.0239,0,-132.364	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:65:32,33:32:1140:33:1180:-86.9411,0,-60.6935	0/1:76:57,19:57:2035:19:684:-39.012,0,-150.702	0/1:32:14,18:14:504:18:644:-48.6576,0,-22.0176	0/1:36:26,10:26:932:10:360:-21.9072,0,-65.4788	0/1:100:72,28:72:2576:28:1008:-60.4421,0,-187.899	0/1:63:53,10:53:1880:10:360:-13.7229,0,-144.047	0/1:20:10,10:10:356:10:360:-26.7237,0,-16.4443	0/1:17:14,3:14:504:3:104:-4.5853,0,-37.5016	0/1:39:31,8:31:1112:8:288:-14.5272,0,-75.7913	0/1:3:1,2:1:36:2:72:-5.93363,0,-1.91799	0/1:98:65,33:65:2312:33:1188:-77.7277,0,-167.365	0/1:38:28,10:28:1004:10:356:-20.9339,0,-70.5006	0/1:68:52,16:52:1845:16:576:-31.7049,0,-126.457	0/1:71:17,54:17:600:54:1932:-152.783,0,-22.511	0/1:73:43,30:43:1536:30:1070:-73.445,0,-99.522	0/1:43:33,10:33:1188:10:360:-19.8,0,-73.5948	0/1:10:7,3:7:248:3:108:-7.06487,0,-17.5851	0/1:47:21,26:21:747:26:936:-70.4049,0,-37.125	0/1:65:20,45:20:716:45:1608:-125.443,0,-25.8924	1/1:111:13,98:13:464:98:3505:-282.615,-0.37048,0	0/1:52:24,28:24:864:28:1008:-75.3813,0,-46.1899	0/1:24:13,11:13:468:11:392:-28.3953,0,-26.064	0/1:23:14,9:14:496:9:324:-22.5822,0,-28.215	0/1:84:42,42:42:1496:42:1506:-110.535,0,-79.2562	0/1:22:11,11:11:392:11:396:-29.3601,0,-17.7469	0/1:59:29,30:29:1040:30:1072:-79.0317,0,-47.0388	0/1:59:31,28:31:1089:28:1008:-73.2756,0,-51.1595	0/1:17:7,10:7:252:10:360:-27.6268,0,-11.6674	0/1:58:38,20:38:1368:20:720:-47.669,0,-85.2116	0/1:62:49,13:49:1737:13:468:-23.7958,0,-120.236	0/1:27:8,19:8:288:19:680:-53.4014,0,-12.6791	0/1:54:23,31:23:828:31:1116:-84.4961,0,-39.2792
chr12	18750871	.	G	C	57762.6	PASS	AB=0.355655;ABP=2340.65;AC=92;AF=0.489362;AN=188;AO=4594;CIGAR=1X;DP=12926;DPB=12926;DPRA=31.2005;EPP=9762.79;EPPR=13951.4;GTI=11;LEN=1;MEANALT=1.04348;MQM=38.8004;MQMR=48.5159;NS=94;NUMALT=1;ODDS=4.39286;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=162988;QR=297327;RO=8328;RPL=25;RPP=9762.79;RPPR=17373.3;RPR=4569;RUN=1;SAF=4594;SAP=9978.75;SAR=0;SRF=7904;SRP=14591.7;SRR=424;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:123:85,38:85:3032:38:1339:-77.6847,0,-229.262	0/1:124:66,58:66:2317:58:2054:-137.417,0,-168.497	0/1:203:160,43:160:5704:43:1528:-69.2471,0,-445.276	0/1:280:197,83:197:7056:83:2967:-168.203,0,-514.741	0/1:104:70,34:70:2484:34:1224:-71.9977,0,-188.483	0/1:55:24,31:24:860:31:1108:-78.8504,0,-59.7855	0/1:173:73,100:73:2582:100:3566:-251.219,0,-172.026	0/1:263:174,89:174:6193:89:3155:-190.35,0,-467.182	0/1:255:168,87:168:6021:87:3061:-187.054,0,-453.623	0/1:116:64,52:64:2288:52:1840:-121.178,0,-162.885	0/1:177:102,75:102:3660:75:2622:-171.232,0,-261.693	0/1:205:135,70:135:4827:70:2483:-151.753,0,-362.034	0/1:170:113,57:113:4031:57:2009:-121.694,0,-303.863	0/1:256:163,93:163:5825:93:3266:-204.903,0,-433.964	0/1:170:105,65:105:3756:65:2296:-144.444,0,-271.919	0/1:152:98,54:98:3507:54:1919:-119.025,0,-261.586	0/1:126:70,56:70:2499:56:1960:-131.385,0,-182.278	0/1:92:57,35:57:2040:35:1244:-79.4838,0,-151.626	0/1:67:50,17:50:1792:17:607:-32.4334,0,-137.452	0/1:126:84,42:84:3008:42:1483:-87.985,0,-220.554	0/1:213:150,63:150:5364:63:2238:-125.447,0,-408.109	0/1:83:71,12:71:2522:12:428:-10.8306,0,-198.141	0/1:192:117,75:117:4145:75:2684:-171.335,0,-295.254	0/1:137:95,42:95:3412:42:1508:-88.2675,0,-259.117	0/1:176:94,82:94:3347:82:2936:-198.909,0,-241.773	0/1:218:146,72:146:5202:72:2563:-150.82,0,-383.901	0/1:305:195,110:195:6951:110:3906:-244.041,0,-518.865	0/1:76:43,33:43:1532:33:1167:-77.5319,0,-111.727	0/1:334:247,87:247:8849:87:3087:-156.921,0,-665.379	0/1:114:73,41:73:2616:41:1457:-89.8024,0,-195.328	0/1:157:84,72:84:2997:72:2580:-171.504,0,-207.83	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.2185	0/1:10:7,3:7:252:3:108:-6.57578,0,-19.5968	0/1:9:8,1:8:288:1:36:-0.714332,0,-22.8499	0/1:16:10,6:10:360:6:216:-13.8003,0,-27.5949	0/1:14:10,4:10:360:4:144:-8.40983,0,-28.053	0/1:297:190,107:190:6755:107:3816:-229.997,0,-494.075	0/1:110:79,31:79:2828:31:1087:-59.8458,0,-217.474	0/1:112:67,45:67:2391:45:1595:-104.018,0,-176.85	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:129:68,61:68:2420:61:2169:-147.5,0,-173.633	0/1:65:42,23:42:1508:23:806:-49.5646,0,-113.067	0/1:118:83,35:83:2963:35:1239:-71.7635,0,-225.309	0/1:160:112,48:112:4011:48:1699:-96.9321,0,-288.993	0/1:144:87,57:87:3119:57:2023:-125.808,0,-230.617	0/1:114:72,42:72:2576:42:1491:-91.4271,0,-189.177	0/1:189:101,88:101:3581:88:3131:-212.298,0,-259.299	0/1:237:139,98:139:4976:98:3456:-223.093,0,-342.664	0/1:98:60,38:60:2140:38:1364:-86.4194,0,-153.78	0/1:113:79,34:79:2817:34:1216:-69.685,0,-203.873	0/1:102:74,28:74:2637:28:1000:-52.8378,0,-193.153	0/1:11:7,4:7:252:4:127:-7.90235,0,-18.7545	0/1:94:69,25:69:2445:25:892:-48.6781,0,-187.419	0/1:110:62,48:62:2232:48:1688:-111.254,0,-157.595	0/1:7:2,5:2:72:5:180:-13.5136,0,-4.39763	0/1:207:127,80:127:4536:80:2837:-182.001,0,-333.618	0/1:78:45,33:45:1589:33:1167:-76.6557,0,-114.681	0/1:15:13,2:13:453:2:72:-1.92099,0,-35.4368	0/1:16:12,4:12:410:4:144:-7.71764,0,-27.0028	0/1:160:85,74:85:3020:74:2644:-178.981,0,-217.303	0/1:213:126,87:126:4511:87:3088:-197.27,0,-322.808	0/1:6:2,4:2:72:4:140:-10.4644,0,-4.8304	0/1:125:91,34:91:3239:34:1204:-65.1707,0,-240.858	0/1:176:125,51:125:4461:51:1802:-99.1411,0,-336.072	0/1:125:80,45:80:2861:45:1603:-99.8095,0,-213.698	0/1:79:53,26:53:1904:26:917:-53.8691,0,-142.857	0/1:167:107,60:107:3795:60:2128:-130.416,0,-275.041	0/1:105:75,30:75:2680:30:1064:-57.2169,0,-196.155	0/1:124:72,52:72:2563:52:1851:-121.703,0,-189.593	0/1:100:67,33:67:2395:33:1184:-71.4449,0,-182.101	0/1:149:82,67:82:2935:67:2383:-154.361,0,-211.415	0/1:27:16,11:16:572:11:392:-25.4414,0,-40.5178	0/1:112:78,34:78:2781:34:1191:-68.8833,0,-211.979	0/1:139:79,60:79:2828:60:2091:-137.505,0,-207.608	0/1:297:199,98:199:7083:98:3482:-206.257,0,-530.647	0/1:157:116,41:116:4120:41:1443:-76.2088,0,-302.507	0/1:279:185,94:185:6613:94:3295:-198.465,0,-501.85	0/1:146:100,46:100:3572:46:1627:-95.1282,0,-271.644	0/1:21:17,4:17:604:4:140:-5.83004,0,-47.0331	0/1:89:60,29:60:2152:29:1044:-63.0195,0,-161.82	0/1:185:140,45:140:4996:45:1596:-81.7018,0,-384.527	0/1:191:135,55:135:4836:55:1968:-110.202,0,-347.314	0/1:156:92,63:92:3308:63:2247:-144.445,0,-236.539	0/1:183:112,71:112:4012:71:2535:-161.05,0,-285.17	0/1:122:83,39:83:2968:39:1352:-78.1677,0,-215.41	0/1:274:186,88:186:6664:88:3125:-184.023,0,-483.442	0/1:47:32,15:32:1140:15:540:-32.4126,0,-86.5969	0/1:148:89,59:89:3188:59:2120:-137.716,0,-235.492	0/1:188:114,74:114:4088:74:2632:-169.638,0,-301.01	0/1:118:78,40:78:2770:40:1417:-86.3274,0,-208.326	0/1:206:125,81:125:4475:81:2848:-179.894,0,-330.763	0/1:132:99,33:99:3531:33:1167:-56.9521,0,-263.269	0/1:96:54,42:54:1920:42:1499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chr12	18750885	.	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chr12	18750897	.	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chr12	18750905	.	A	G	478.079	PASS	AB=0.147394;ABP=3607.81;AC=22;AF=0.117021;AN=188;AO=670;CIGAR=1X;DP=13804;DPB=13804;DPRA=1.0709;EPP=1457.9;EPPR=24602.4;GTI=17;LEN=1;MEANALT=1.05128;MQM=36.3463;MQMR=43.3002;NS=94;NUMALT=1;ODDS=11.7028;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=23589;QR=465118;RO=13130;RPL=670;RPP=1457.9;RPPR=19257.5;RPR=0;RUN=1;SAF=670;SAP=1457.9;SAR=0;SRF=11493;SRP=16068.4;SRR=1637;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:128:116,12:116:4092:12:419:0,-3.0122,-319.231	0/1:126:96,30:96:3423:30:1063:-51.6503,0,-254.076	0/0:212:192,20:192:6788:20:697:0,-4.60196,-525.817	0/0:322:322,0:322:11445:0:0:0,-96.9317,-923.874	0/1:109:94,15:94:3332:15:536:-11.8328,0,-255.234	0/1:60:53,7:53:1883:7:243:-2.79582,0,-137.041	0/0:184:184,0:184:6512:0:0:0,-55.3895,-523.611	0/1:270:237,33:237:8387:33:1167:-17.2036,0,-642.631	0/0:253:253,0:253:8912:0:0:0,-76.1606,-765.886	0/0:133:133,0:133:4742:0:0:0,-40.037,-379.701	0/0:196:196,0:196:6907:0:0:0,-59.0019,-568.667	0/0:230:230,0:230:8138:0:0:0,-69.2369,-682.868	0/0:188:188,0:188:6672:0:0:0,-56.5936,-566.464	0/0:255:255,0:255:9049:0:0:0,-76.7626,-779.757	0/0:192:192,0:192:6842:0:0:0,-57.7978,-558.808	0/0:160:160,0:160:5656:0:0:0,-48.1648,-479.754	0/0:143:143,0:143:5104:0:0:0,-43.0473,-428.268	0/0:103:103,0:103:3637:0:0:0,-31.0061,-306.729	0/0:67:67,0:67:2356:0:0:0,-20.169,-205.453	0/0:150:141,9:141:4997:9:324:0,-18.1025,-370.365	0/1:215:191,24:191:6739:24:851:-6.21348,0,-518.079	0/0:90:81,9:81:2881:9:316:0,-0.629226,-216.554	0/0:211:210,1:210:7418:1:36:0,-59.9195,-601.442	0/0:138:135,3:135:4818:3:108:0,-32.3049,-405.739	0/0:184:184,0:184:6525:0:0:0,-55.3895,-557.732	0/0:223:203,20:203:7196:20:716:0,-8.12096,-551.189	0/0:323:323,0:323:11445:0:0:0,-97.2327,-966.29	0/0:86:86,0:86:3049:0:0:0,-25.8886,-259.07	0/1:346:297,48:297:10488:48:1685:-34.3298,0,-774.16	0/1:119:103,16:103:3666:16:576:-12.5682,0,-275.242	0/0:185:184,1:184:6522:1:36:0,-52.3915,-525.013	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.4463	0/0:8:8,0:8:275:0:0:0,-2.40824,-24.3355	0/0:9:9,0:9:320:0:0:0,-2.70927,-28.3977	0/1:14:10,4:10:347:4:144:-8.23797,0,-26.8573	0/1:11:10,1:10:348:1:36:-0.0348166,0,-27.6368	0/1:314:262,52:262:9307:52:1801:-54.0952,0,-685.778	0/0:112:103,9:103:3631:9:309:0,-7.64426,-288.321	0/0:119:119,0:119:4208:0:0:0,-35.8226,-358.683	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:141:141,0:141:4992:0:0:0,-42.4452,-419.815	0/0:76:76,0:76:2693:0:0:0,-22.8783,-223.835	0/0:150:150,0:150:5324:0:0:0,-45.1545,-436.858	0/0:174:174,0:174:6167:0:0:0,-52.3792,-503.367	0/1:145:116,29:116:4107:29:1019:-41.3139,0,-305.819	0/0:130:117,13:117:4150:13:464:0,-0.720437,-305.994	0/0:189:189,0:189:6707:0:0:0,-56.8947,-567.065	0/0:248:248,0:248:8797:0:0:0,-74.6554,-724.712	0/0:109:109,0:109:3866:0:0:0,-32.8123,-312.681	0/0:116:116,0:116:4127:0:0:0,-34.9195,-340.615	0/1:110:96,14:96:3402:14:500:-7.93909,0,-247.123	0/0:14:14,0:14:483:0:0:0,-4.21442,-38.8714	0/0:106:106,0:106:3796:0:0:0,-31.9092,-314.005	0/0:117:117,0:117:4180:0:0:0,-35.2205,-347.49	0/1:6:2,4:2:72:4:140:-10.3291,0,-4.69866	0/0:205:205,0:205:7262:0:0:0,-61.7111,-618.217	0/0:83:83,0:83:2956:0:0:0,-24.9855,-250.103	0/0:15:15,0:15:532:0:0:0,-4.51545,-46.7884	0/0:23:23,0:23:815:0:0:0,-6.92369,-61.0106	0/0:174:174,0:174:6152:0:0:0,-52.3792,-520.068	0/1:220:178,42:178:6354:42:1483:-58.0851,0,-468.242	0/0:6:6,0:6:216:0:0:0,-1.80618,-18.6318	0/0:151:151,0:151:5325:0:0:0,-45.4555,-425.141	0/0:195:175,20:175:6234:20:693:0,-0.749543,-454.263	0/0:132:130,2:130:4607:2:68:0,-33.7001,-388.486	0/1:92:81,11:81:2869:11:363:-3.00757,0,-204.764	0/0:175:161,14:161:5701:14:489:0,-12.0786,-430.471	0/0:117:105,12:105:3751:12:432:0,-0.281984,-267.945	0/0:140:140,0:140:4915:0:0:0,-42.1442,-414.431	0/1:97:85,12:85:3012:12:424:-6.86128,0,-235.7	0/1:150:119,31:119:4199:31:1112:-45.6103,0,-311.258	0/0:32:32,0:32:1144:0:0:0,-9.63296,-90.0581	0/0:113:104,9:104:3693:9:324:0,-6.54022,-281.935	0/1:148:131,17:131:4642:17:590:-5.95587,0,-355.594	0/0:288:264,23:264:9354:23:804:0,-20.5404,-738.366	0/0:176:176,0:176:6245:0:0:0,-52.9813,-506.869	0/1:282:252,30:252:8914:30:1059:-4.50598,0,-684.942	0/1:148:131,17:131:4596:17:612:-7.05332,0,-346.919	0/0:21:20,1:20:707:1:36:0,-2.97548,-57.6031	0/0:91:91,0:91:3220:0:0:0,-27.3937,-272.808	0/0:193:193,0:193:6808:0:0:0,-58.0988,-582.648	0/0:219:219,0:219:7782:0:0:0,-65.9256,-636.319	0/0:170:170,0:170:6010:0:0:0,-51.1751,-491.445	0/0:192:190,0:190:6707:0:0:0,-57.1957,-557.346	0/0:131:131,0:131:4606:0:0:0,-39.4349,-380.943	0/0:295:295,0:295:10531:0:0:0,-88.8038,-871.184	0/0:50:50,0:50:1776:0:0:0,-15.0515,-150.059	0/0:164:164,0:164:5783:0:0:0,-49.3689,-491.029	0/0:214:214,0:214:7566:0:0:0,-64.4204,-631.96	0/0:127:127,0:127:4511:0:0:0,-38.2308,-383.989	0/1:214:182,32:182:6374:32:1125:-28.5739,0,-481.993	0/1:142:119,23:119:4201:23:789:-23.4455,0,-304.149	0/0:96:96,0:96:3351:0:0:0,-28.8989,-283.792	0/0:293:293,0:293:10389:0:0:0,-88.2018,-827.062
chr12	18750908	.	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chr12	18798187	.	G	A	7.99235e-12	PASS	AB=0.435308;ABP=33.0722;AC=11;AF=0.0585106;AN=188;AO=749;CIGAR=1X;DP=16371;DPB=16371;DPRA=0.498514;EPP=1629.44;EPPR=33925.8;GTI=10;LEN=1;MEANALT=1;MQM=10.8838;MQMR=28.7541;NS=94;NUMALT=1;ODDS=59.1568;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26710;QR=550979;RO=15622;RPL=0;RPP=1629.44;RPPR=33925.8;RPR=749;RUN=1;SAF=0;SAP=1629.44;SAR=749;SRF=0;SRP=33925.8;SRR=15622;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:13:12,1:12:378:1:36:0,-2.81465,-27.0238	0/1:172:115,57:115:4052:57:2048:-4.69624,0,-237.287	0/0:53:43,10:43:1518:10:360:0,-6.13756,-98.3206	0/0:115:115,0:115:4065:0:0:0,-34.6184,-285.517	0/0:31:26,5:26:923:5:180:0,-4.36948,-60.0132	0/0:34:28,6:28:995:6:216:0,-4.19196,-64.9439	0/0:56:56,0:56:2016:0:0:0,-16.8577,-142.134	0/0:93:67,26:67:2378:26:936:0,-1.90553,-141.021	0/0:85:85,0:85:3018:0:0:0,-25.5875,-214.081	0/0:90:90,0:90:3215:0:0:0,-27.0927,-226.554	0/0:627:627,0:627:22041:0:0:0,-188.746,-1565.39	0/0:33:33,0:33:1152:0:0:0,-9.93399,-83.006	0/0:32:32,0:32:1122:0:0:0,-9.63296,-78.9842	0/0:65:65,0:65:2212:0:0:0,-19.5669,-157.767	0/0:40:40,0:40:1425:0:0:0,-12.0412,-101.333	0/0:55:55,0:55:1959:0:0:0,-16.5566,-138.722	0/0:78:78,0:78:2746:0:0:0,-23.4803,-195.074	0/0:45:45,0:45:1569:0:0:0,-13.5463,-109.66	0/0:177:177,0:177:6209:0:0:0,-53.2823,-438.125	0/0:107:84,23:84:2962:23:824:0,-11.2516,-189.299	0/1:86:52,34:52:1820:34:1206:-9.27587,0,-105.261	0/0:40:29,11:29:1028:11:396:0,-2.05101,-61.4803	0/0:24:24,0:24:852:0:0:0,-7.22472,-61.1645	0/0:55:51,4:51:1783:4:144:0,-12.4913,-123.775	0/0:29:29,0:29:1040:0:0:0,-8.72987,-73.7477	0/0:171:134,37:134:4700:37:1332:0,-18.0189,-294.285	0/0:125:125,0:125:4427:0:0:0,-37.6287,-314.836	0/0:21:21,0:21:752:0:0:0,-6.32163,-53.5125	0/0:134:98,36:98:3481:36:1279:0,-1.29639,-200.076	0/0:271:200,71:200:7075:71:2556:0,-10.2136,-422.38	0/0:106:106,0:106:3745:0:0:0,-31.9092,-264.721	0/0:350:349,1:349:12386:1:36:0,-104.262,-873.611	0/0:369:369,0:369:13065:0:0:0,-111.08,-925.28	0/0:1080:1080,0:1080:38136:0:0:0,-325.112,-2685.14	0/0:607:606,1:606:21379:1:36:0,-181.626,-1507.51	0/0:270:270,0:270:9462:0:0:0,-81.2781,-670.792	0/1:113:58,55:58:2046:55:1968:-18.2945,0,-107.363	0/0:140:114,26:114:3993:26:913:0,-16.6311,-260.021	0/0:460:460,0:460:15972:0:0:0,-138.474,-1140.11	0/0:243:243,0:243:8615:0:0:0,-73.1503,-601.998	0/0:120:120,0:120:4264:0:0:0,-36.1236,-299.332	0/0:202:202,0:202:7118:0:0:0,-60.8081,-504.708	0/0:77:77,0:77:2715:0:0:0,-23.1793,-190.454	0/0:35:35,0:35:1201:0:0:0,-10.536,-86.5629	0/1:36:21,15:21:712:15:536:-2.83827,0,-41.3119	0/0:67:51,16:51:1802:16:559:0,-5.1512,-110.443	0/0:83:83,0:83:2895:0:0:0,-24.9855,-207.549	0/0:153:153,0:153:5412:0:0:0,-46.0576,-380.397	0/0:127:127,0:127:4512:0:0:0,-38.2308,-314.475	0/0:135:135,0:135:4774:0:0:0,-40.639,-339.679	0/0:78:61,17:61:2180:17:612:0,-8.09544,-136.554	0/0:1176:1176,0:1176:41743:0:0:0,-354.011,-2943.56	0/0:134:134,0:134:4737:0:0:0,-40.338,-333.41	0/0:59:59,0:59:2092:0:0:0,-17.7608,-144.573	0/0:490:490,0:490:17230:0:0:0,-147.505,-1214.79	0/0:77:77,0:77:2684:0:0:0,-23.1793,-193.447	0/0:18:18,0:18:648:0:0:0,-5.41854,-45.4336	0/0:528:528,0:528:18714:0:0:0,-158.944,-1302.44	0/0:971:971,0:971:34304:0:0:0,-292.3,-2379.26	0/0:63:63,0:63:2236:0:0:0,-18.9649,-157.856	0/1:63:37,26:37:1328:26:917:-4.57464,0,-75.5271	0/0:604:604,0:604:21360:0:0:0,-181.822,-1507.07	0/0:79:79,0:79:2800:0:0:0,-23.7814,-193.624	0/0:141:111,30:111:3927:30:1063:0,-12.2946,-246.717	0/0:76:76,0:76:2698:0:0:0,-22.8783,-189.658	0/0:43:38,5:38:1311:5:180:0,-8.3488,-88.8053	0/0:84:74,10:74:2578:10:356:0,-15.7437,-175.838	0/1:53:26,27:26:913:27:964:-10.1392,0,-48.5069	0/0:457:457,0:457:15964:0:0:0,-137.571,-1140.74	0/0:51:37,14:37:1306:14:500:0,-0.243868,-76.6558	0/1:62:40,22:40:1404:22:792:-1.21662,0,-80.4446	0/0:977:977,0:977:34382:0:0:0,-294.106,-2443.95	0/0:47:36,11:36:1272:11:392:0,-3.25342,-78.6032	0/1:52:34,18:34:1205:18:644:-2.43453,0,-70.1574	0/0:82:66,16:66:2337:16:568:0,-8.75621,-151.188	0/0:106:106,0:106:3752:0:0:0,-31.9092,-260.677	0/0:87:75,12:75:2647:12:428:0,-14.2151,-173.316	0/1:71:38,33:38:1352:33:1152:-11.5843,0,-72.1569	0/0:426:426,0:426:15037:0:0:0,-128.239,-1061.87	0/0:74:74,0:74:2603:0:0:0,-22.2762,-185.841	0/0:86:86,0:86:3067:0:0:0,-25.8886,-215.536	0/0:130:130,0:130:4604:0:0:0,-39.1339,-326.766	0/0:68:68,0:68:2401:0:0:0,-20.47,-167.778	0/0:34:34,0:34:1203:0:0:0,-10.235,-86.1846	0/0:58:58,0:58:2013:0:0:0,-17.4597,-145.248	0/0:72:72,0:72:2530:0:0:0,-21.6742,-182.956	0/0:26:26,0:26:908:0:0:0,-7.82678,-65.29	0/0:61:61,0:61:2117:0:0:0,-18.3628,-149.618	0/0:50:50,0:50:1766:0:0:0,-15.0515,-125.871	0/0:618:618,0:618:21693:0:0:0,-186.037,-1539.56	0/1:77:34,43:34:1212:43:1514:-19.3313,0,-62.9273	0/1:42:12,30:12:428:30:1067:-16.6808,0,-18.0181	0/0:33:33,0:33:1157:0:0:0,-9.93399,-82.8525	0/0:57:57,0:57:2019:0:0:0,-17.1587,-143.977
chr12	18968439	.	CAAC	TAAA,CAAA	234540	PASS	AB=0.569291,0.426565;ABP=184.168,206.483;AC=147,39;AF=0.790323,0.209677;AN=186;AO=8996,1870;CIGAR=1X2M1X,3M1X;DP=10902;DPB=10902;DPRA=0,1.1434;EPP=19520.2,4054.98;EPPR=5.18177;GTI=4;LEN=4,1;MEANALT=1.86022,2.3617;MQM=59.9801,59.9989;MQMR=60;NS=93;NUMALT=2;ODDS=3.08451;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=318271,66820;QR=30;RO=1;RPL=2,1;RPP=19520.2,4054.98;RPPR=5.18177;RPR=8994,1869;RUN=1,1;SAF=0,0;SAP=19537.6,4063.66;SAR=8996,1870;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:49:0,21,28:0:0:21,28:749,1000:-142.943,-81.886,-75.5643,-61.4135,0,-52.9847	1/2:75:0,47,28:0:0:47,28:1661,1008:-217.878,-82.6075,-68.4591,-135.628,0,-127.199	1/2:182:0,122,60:0:0:122,60:4297,2151:-525.624,-175.795,-139.069,-350.186,0,-332.124	1/1:351:0,347,4:0:0:347,4:12239,144:-1101,-104.457,0,-1089.25,-92.3479,-1088.05	1/2:47:0,32,15:0:0:32,15:1144,536:-137.339,-44.0594,-34.4264,-93.6365,0,-89.121	1/2:49:0,37,12:0:0:37,12:1318,424:-142.314,-34.8841,-23.7459,-107.784,0,-104.171	1/1:132:0,131,1:0:0:131,1:4601,36:-413.892,-39.4349,0,-410.955,-36.1377,-410.654	1/2:146:0,110,34:0:0:110,34:3874,1207:-413.731,-98.3407,-65.2274,-315.385,0,-305.15	1/1:156:0,155,0:0:0:155,0:5437,0:-489.145,-46.6597,0,-489.145,-46.6597,-489.145	1/1:122:0,122,0:0:0:122,0:4282,0:-385.56,-36.7257,0,-385.56,-36.7257,-385.56	1/1:41:0,41,0:0:0:41,0:1467,0:-132.326,-12.3422,0,-132.326,-12.3422,-132.326	1/1:110:0,108,0:0:0:108,0:3846,0:-346.007,-32.5112,0,-346.007,-32.5112,-346.007	1/1:56:0,56,0:0:0:56,0:1987,0:-179.103,-16.8577,0,-179.103,-16.8577,-179.103	1/1:70:0,69,1:0:0:69,1:2444,36:-219.855,-20.7711,0,-216.917,-17.4738,-216.616	1/1:79:0,79,0:0:0:79,0:2811,0:-253.229,-23.7814,0,-253.229,-23.7814,-253.229	1/1:91:0,90,1:0:0:90,1:3171,25:-285.365,-27.0927,0,-283.417,-24.8939,-283.116	1/1:40:0,39,0:0:0:39,0:1388,0:-124.859,-11.7402,0,-124.859,-11.7402,-124.859	1/1:41:0,41,0:0:0:41,0:1460,0:-131.696,-12.3422,0,-131.696,-12.3422,-131.696	1/1:35:0,34,0:0:0:34,0:1188,0:-106.864,-10.235,0,-106.864,-10.235,-106.864	1/2:196:0,114,81:0:0:114,81:4010,2878:-560.934,-234.512,-200.194,-326.416,0,-302.033	1/2:233:0,140,93:0:0:140,93:4974,3324:-676.692,-271.381,-229.237,-405.667,0,-377.671	1/2:89:0,41,48:0:0:41,48:1455,1698:-257.203,-138.654,-126.311,-118.903,0,-104.454	1/1:200:0,199,0:0:0:199,0:7027,0:-632.279,-59.905,0,-632.279,-59.905,-632.279	1/1:58:0,55,3:0:0:55,3:1949,108:-175.326,-16.5567,0,-166.514,-7.38457,-165.61	1/1:69:0,69,0:0:0:69,0:2451,0:-220.845,-20.7711,0,-220.845,-20.7711,-220.845	1/2:293:0,168,125:0:0:168,125:5914,4472:-846.47,-365.021,-314.448,-481.803,0,-444.175	1/1:295:0,295,0:0:0:295,0:10432,0:-938.81,-88.8039,0,-938.81,-88.8039,-938.81	1/1:31:0,31,0:0:0:31,0:1101,0:-99.3998,-9.33193,0,-99.3998,-9.33193,-99.3998	1/2:287:0,181,106:0:0:181,106:6435,3791:-833.876,-309.479,-254.992,-524.754,0,-492.845	1/2:159:0,90,67:0:0:90,67:3172,2394:-453.53,-195.27,-168.178,-258.337,0,-238.168	1/1:140:0,140,0:0:0:140,0:4921,0:-443.046,-42.1442,0,-443.046,-42.1442,-443.046	1/2:6:0,4,2:0:0:4,2:144,72:-17.9843,-6.23466,-5.03054,-12.1095,0,-11.5074	1/2:6:0,3,2:0:0:3,2:97,72:-13.7301,-5.91475,-5.01166,-7.84112,0,-7.23906	.:.:.:.:.:.:.:.	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/2:7:0,2,5:0:0:2,5:71,180:-20.8306,-15.0469,-14.4449,-6.14,0,-4.63485	1/2:209:0,94,114:0:0:94,114:3330,4095:-605.412,-334.145,-305.848,-271.351,0,-237.034	1/2:105:0,73,32:0:0:73,32:2600,1152:-306.271,-94.3572,-72.382,-212.273,0,-202.64	1/1:47:0,46,0:0:0:46,0:1623,0:-145.909,-13.8474,0,-145.909,-13.8474,-145.909	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/1:202:0,201,0:0:0:201,0:7137,0:-642.033,-60.507,0,-642.033,-60.507,-642.033	1/1:18:0,18,0:0:0:18,0:631,0:-57.1156,-5.41854,0,-57.1156,-5.41854,-57.1156	1/1:257:0,257,0:0:0:257,0:9045,0:-814.037,-77.3647,0,-814.037,-77.3647,-814.037	1/1:58:0,57,0:0:0:57,0:2035,0:-183.141,-17.1587,0,-183.141,-17.1587,-183.141	1/2:82:0,37,45:0:0:37,45:1315,1592:-237.18,-130.021,-118.883,-107.513,0,-93.967	1/2:109:0,67,41:0:0:67,41:2385,1476:-314.874,-120.493,-100.324,-194.438,0,-182.096	1/1:131:0,131,0:0:0:131,0:4588,0:-413.06,-39.4349,0,-413.06,-39.4349,-413.06	1/1:271:0,271,0:0:0:271,0:9583,0:-862.438,-81.5791,0,-862.438,-81.5791,-862.438	1/1:88:0,88,0:0:0:88,0:3103,0:-279.497,-26.4906,0,-279.497,-26.4906,-279.497	1/1:198:0,198,0:0:0:198,0:6979,0:-628.184,-59.6039,0,-628.184,-59.6039,-628.184	1/2:113:0,60,51:0:0:60,51:2129,1836:-323.266,-149.808,-131.746,-173.455,0,-158.103	1/1:7:0,7,0:0:0:7,0:246,0:-22.482,-2.10721,0,-22.482,-2.10721,-22.482	1/1:130:0,130,0:0:0:130,0:4616,0:-415.606,-39.1339,0,-415.606,-39.1339,-415.606	1/1:128:0,128,0:0:0:128,0:4497,0:-404.9,-38.5318,0,-404.9,-38.5318,-404.9	1/2:12:0,5,7:0:0:5,7:177,252:-35.3371,-20.9217,-19.4166,-14.7717,0,-12.6645	1/1:214:0,214,0:0:0:214,0:7602,0:-684.225,-64.4204,0,-684.225,-64.4204,-684.225	1/1:47:0,47,0:0:0:47,0:1659,0:-149.597,-14.1484,0,-149.597,-14.1484,-149.597	1/2:17:0,10,7:0:0:10,7:359,2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chr12	19001856	.	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chr12	19141145	.	T	C	13744.9	PASS	AB=0.453978;ABP=38.3873;AC=36;AF=0.191489;AN=188;AO=877;CIGAR=1X;DP=4843;DPB=4843;DPRA=1.05007;EPP=1907.39;EPPR=8612.9;GTI=0;LEN=1;MEANALT=1;MQM=59.9806;MQMR=59.9662;NS=94;NUMALT=1;ODDS=1.28274;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=31129;QR=141970;RO=3965;RPL=877;RPP=1907.39;RPPR=8612.9;RPR=0;RUN=1;SAF=877;SAP=1907.39;SAR=0;SRF=3965;SRP=8612.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:14,6:14:500:6:216:-13.7699,0,-39.3156	0/1:34:26,8:26:928:8:284:-15.6683,0,-73.6023	0/1:56:29,27:29:1044:27:963:-70.1264,0,-77.4171	0/0:154:154,0:154:5532:0:0:0,-46.3586,-498.003	0/1:9:4,5:4:140:5:180:-13.8428,0,-10.2353	0/1:15:5,10:5:176:10:360:-28.2289,0,-11.6696	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:82:48,34:48:1705:34:1220:-85.4223,0,-129.047	0/0:65:65,0:65:2324:0:0:0,-19.5669,-209.42	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:92:92,0:92:3295:0:0:0,-27.6948,-296.739	0/0:53:53,0:53:1883:0:0:0,-15.9546,-169.748	0/0:42:42,0:42:1489:0:0:0,-12.6433,-134.303	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:40:40,0:40:1419:0:0:0,-12.0412,-128.007	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:68:52,16:52:1872:16:572:-31.3434,0,-148.286	0/1:103:51,52:51:1832:52:1855:-136.221,0,-134.155	0/1:21:9,12:9:324:12:417:-31.5395,0,-23.1842	0/0:49:48,1:48:1728:1:36:0,-11.1522,-152.207	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:118:64,54:64:2304:54:1928:-138.275,0,-172.099	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/0:22:21,1:21:752:1:36:0,-3.02438,-64.408	0/1:152:80,72:80:2867:72:2522:-181.471,0,-212.51	0/1:44:28,16:28:1004:16:576:-38.9297,0,-77.4305	0/0:87:87,0:87:3103:0:0:0,-26.1896,-279.497	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:181:86,95:86:3058:95:3368:-248.848,0,-220.963	0/1:74:45,29:45:1620:29:1021:-69.9249,0,-123.813	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.756	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:100:100,0:100:3580:0:0:0,-30.103,-322.401	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.497	0/1:51:24,27:24:860:27:947:-70.1912,0,-62.3693	0/1:46:25,21:25:896:21:732:-52.3513,0,-67.113	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:94:93,0:93:3335:0:0:0,-27.9958,-300.137	0/0:33:33,0:33:1179:0:0:0,-9.93399,-106.417	0/0:86:86,0:86:3080:0:0:0,-25.8886,-277.428	0/1:82:48,34:48:1707:34:1207:-84.2508,0,-129.231	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.452	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:5:1,4:1:32:4:144:-11.8085,0,-1.69416	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:66:31,35:31:1108:35:1252:-93.1171,0,-80.163	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:139:139,0:139:4964:0:0:0,-41.8432,-446.908	0/1:56:35,21:35:1236:21:743:-50.3348,0,-94.6838	0/0:73:71,2:71:2535:2:72:0,-15.1385,-221.558	0/1:34:19,15:19:680:15:516:-36.5306,0,-51.2941	0/1:51:31,20:31:1116:20:720:-49.7762,0,-85.3992	0/1:66:31,35:31:1104:35:1256:-93.4773,0,-79.8027	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:20:14,6:14:500:6:212:-13.4042,0,-39.3156	0/1:34:18,16:18:644:16:576:-41.94,0,-48.0556	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:66:34,32:34:1224:32:1137:-82.769,0,-90.5991	0/1:52:24,28:24:851:28:985:-73.308,0,-61.2559	0/1:69:42,27:42:1504:27:949:-64.9526,0,-114.715	0/0:114:114,0:114:4092:0:0:0,-34.3174,-368.465	0/1:22:9,13:9:324:13:468:-35.837,0,-22.8832	0/1:94:63,31:63:2260:31:1107:-71.6433,0,-175.366	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:109:109,0:109:3903:0:0:0,-32.8123,-351.459	0/0:51:51,0:51:1819:0:0:0,-15.3525,-163.991	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/0:35:35,0:35:1224:0:0:0,-10.536,-110.461	0/0:97:97,0:97:3467:0:0:0,-29.1999,-312.242	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:49:49,0:49:1756:0:0:0,-14.7505,-158.324	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.756	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:47:26,21:26:932:21:740:-52.775,0,-70.0505	0/1:57:24,33:24:860:33:1168:-88.268,0,-60.5631	0/0:84:84,0:84:3011:0:0:0,-25.2865,-271.22	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232
chr12	19141152	.	A	G	81967.8	PASS	AB=0.539591;ABP=28.9735;AC=152;AF=0.808511;AN=188;AO=3860;CIGAR=1X;DP=4741;DPB=4741;DPRA=0;EPP=8384.89;EPPR=1916.08;GTI=0;LEN=1;MEANALT=1;MQM=59.9728;MQMR=59.9659;NS=94;NUMALT=1;ODDS=2.08553;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=136609;QR=31535;RO=881;RPL=3860;RPP=8384.89;RPPR=1916.08;RPR=0;RUN=1;SAF=3860;SAP=8384.89;SAR=0;SRF=881;SRP=1916.08;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:7,13:7:244:13:449:-34.7169,0,-16.2788	0/1:34:8,26:8:288:26:917:-72.6087,0,-16.0324	0/1:53:26,27:26:932:27:968:-71.4828,0,-68.2425	1/1:152:0,152:0:0:152:5359:-482.444,-45.7566,0	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:15:10,5:10:360:5:180:-12.0366,0,-28.2289	1/1:47:0,47:0:0:47:1668:-150.407,-14.1484,0	0/1:78:33,45:33:1180:45:1608:-121.53,0,-83.0277	1/1:60:0,60:0:0:60:2129:-191.877,-18.0618,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:45:0,45:0:0:45:1603:-144.559,-13.5464,0	1/1:89:0,89:0:0:89:3096:-278.799,-26.7917,0	1/1:52:0,52:0:0:52:1818:-163.9,-15.6536,0	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	1/1:69:0,69:0:0:69:2427:-218.687,-20.7711,0	1/1:35:0,35:0:0:35:1222:-110.282,-10.5361,0	1/1:23:0,23:0:0:23:808:-73.0401,-6.92369,0	1/1:21:0,21:0:0:21:730:-66.0194,-6.32163,0	1/1:19:0,19:0:0:19:652:-58.9991,-5.71957,0	0/1:70:17,53:17:608:53:1896:-149.843,0,-33.9799	0/1:103:53,50:53:1892:50:1784:-129.837,0,-139.552	0/1:20:11,9:11:396:9:324:-23.4853,0,-29.9621	1/1:47:1,46:1:36:46:1635:-143.84,-10.5501,0	1/1:31:0,31:0:0:31:1106:-99.8506,-9.33193,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:119:54,65:54:1917:65:2277:-169.359,0,-136.983	1/1:105:0,105:0:0:105:3755:-338.133,-31.6082,0	1/1:22:0,22:0:0:22:776:-70.1622,-6.62266,0	0/1:150:72,78:72:2560:78:2776:-204.925,0,-185.494	0/1:44:16,28:16:576:28:987:-75.8977,0,-38.9297	1/1:86:0,86:0:0:86:3039:-273.739,-25.8886,0	0/1:10:5,5:5:180:5:176:-13.1747,0,-13.5418	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:15:0,15:0:0:15:528:-47.8508,-4.51545,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:172:91,81:91:3272:81:2855:-205.41,0,-242.922	0/1:74:29,45:29:1036:45:1608:-122.734,0,-71.2777	1/1:28:0,28:0:0:28:978:-88.3312,-8.42884,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:69:0,69:0:0:69:2435:-219.404,-20.7711,0	1/1:16:0,16:0:0:16:559:-50.6376,-4.81648,0	1/1:94:0,94:0:0:94:3347:-301.442,-28.2968,0	1/1:38:0,38:0:0:38:1341:-120.988,-11.4391,0	0/1:52:28,24:28:991:24:848:-60.9839,0,-73.85	0/1:46:21,25:21:756:25:888:-66.3916,0,-54.5198	1/1:48:0,48:0:0:48:1724:-155.445,-14.4494,0	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:34:0,34:0:0:34:1199:-108.215,-10.235,0	1/1:82:0,82:0:0:82:2934:-264.295,-24.6845,0	0/1:81:34,47:34:1220:47:1688:-127.824,0,-85.7234	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:68:0,68:0:0:68:2414:-217.515,-20.47,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:67:0,67:0:0:67:2371:-213.649,-20.169,0	1/1:15:0,15:0:0:15:532:-48.2131,-4.51545,0	0/1:5:4,1:4:144:1:32:-1.69416,0,-11.8085	1/1:11:0,11:0:0:11:373:-33.8952,-3.31133,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:64:35,29:35:1256:29:1027:-73.4763,0,-94.0794	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:135:0,135:0:0:135:4815:-433.506,-40.6391,0	0/1:55:20,35:20:720:35:1243:-95.6172,0,-48.5721	1/1:75:2,73:2:72:73:2602:-227.585,-15.7405,0	0/1:34:14,20:14:504:20:686:-51.8224,0,-35.4631	0/1:49:20,29:20:716:29:1039:-79.0739,0,-50.0172	0/1:68:38,30:38:1364:30:1067:-75.8712,0,-102.562	1/1:20:0,20:0:0:20:711:-64.3156,-6.0206,0	0/1:20:6,14:6:216:14:481:-37.5945,0,-13.7699	0/1:35:17,18:17:612:18:644:-47.7545,0,-44.8774	1/1:12:0,12:0:0:12:423:-38.4051,-3.61236,0	0/1:66:32,34:32:1144:34:1205:-88.8859,0,-83.4015	0/1:55:30,25:30:1072:25:884:-63.3171,0,-80.2358	0/1:69:28,41:28:1008:41:1430:-108.213,0,-70.2653	1/1:113:0,113:0:0:113:4033:-363.158,-34.0164,0	0/1:21:13,8:13:464:8:288:-19.9458,0,-35.7759	0/1:93:31,62:31:1108:62:2173:-167.839,0,-72.0352	1/1:11:0,11:0:0:11:388:-35.2574,-3.31133,0	1/1:83:0,83:0:0:83:2938:-264.653,-24.9855,0	1/1:48:0,48:0:0:48:1696:-152.924,-14.4494,0	1/1:105:0,105:0:0:105:3756:-338.24,-31.6082,0	1/1:51:0,51:0:0:51:1783:-160.751,-15.3525,0	1/1:46:0,46:0:0:46:1616:-145.726,-13.8474,0	1/1:32:0,32:0:0:32:1112:-100.384,-9.63296,0	1/1:95:0,95:0:0:95:3328:-299.741,-28.5979,0	1/1:17:0,17:0:0:17:587:-53.1539,-5.11751,0	1/1:50:0,50:0:0:50:1731:-156.071,-15.0515,0	1/1:48:0,48:0:0:48:1675:-151.035,-14.4494,0	1/1:25:0,25:0:0:25:872:-78.7964,-7.52575,0	0/1:50:23,27:23:819:27:956:-71.3042,0,-58.9801	0/1:56:34,22:34:1224:22:779:-53.5744,0,-93.581	1/1:78:0,78:0:0:78:2770:-249.542,-23.4803,0	1/1:54:0,54:0:0:54:1868:-168.394,-16.2556,0
chr12	19280412	.	A	G	164959	PASS	AB=0.471272;ABP=36.9466;AC=148;AF=0.787234;AN=188;AO=7902;CIGAR=1X;DP=10444;DPB=10444;DPRA=0;EPP=17162;EPPR=5520.72;GTI=3;LEN=1;MEANALT=1.01064;MQM=59.9186;MQMR=59.9799;NS=94;NUMALT=1;ODDS=0.513462;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=279522;QR=90739;RO=2541;RPL=0;RPP=17162;RPPR=5520.72;RPR=7902;RUN=1;SAF=0;SAP=17162;SAR=7902;SRF=0;SRP=5520.72;SRR=2541;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:40:0,40:0:0:40:1403:-126.564,-12.0412,0	0/1:98:54,44:54:1923:44:1488:-104.698,0,-143.845	1/1:151:0,151:0:0:151:5383:-484.603,-45.4555,0	1/1:268:2,266:2:72:266:9412:-840.109,-73.8393,0	1/1:80:0,80:0:0:80:2832:-255.117,-24.0824,0	1/1:79:0,79:0:0:79:2813:-253.372,-23.7814,0	0/1:91:44,47:44:1576:47:1667:-122.923,0,-114.738	1/1:200:0,199:0:0:199:7070:-636.111,-59.905,0	0/1:93:52,41:52:1864:41:1451:-102.888,0,-140.044	1/1:71:0,71:0:0:71:2511:-226.233,-21.3731,0	1/1:75:0,75:0:0:75:2633:-237.218,-22.5773,0	1/1:110:1,109:1:36:109:3856:-343.639,-29.515,0	0/1:68:41,27:41:1454:27:919:-62.5461,0,-110.684	1/1:96:0,96:0:0:96:3418:-307.826,-28.8989,0	0/1:77:37,40:37:1311:40:1379:-101.224,0,-95.1116	1/1:67:0,67:0:0:67:2370:-213.512,-20.169,0	1/1:50:0,50:0:0:50:1763:-158.953,-15.0515,0	0/1:30:12,18:12:424:18:624:-47.4367,0,-29.4655	0/1:38:24,14:24:840:14:500:-33.897,0,-64.4763	0/1:173:107,66:107:3844:66:2339:-158.691,0,-294.077	0/1:166:86,80:86:3066:80:2822:-204.249,0,-226.197	0/1:176:128,48:128:4561:48:1707:-100.934,0,-357.675	1/1:264:1,263:1:36:263:9329:-835.976,-75.8736,0	1/1:79:5,74:5:180:74:2638:-221.114,-7.22931,0	1/1:122:0,122:0:0:122:4351:-391.765,-36.7257,0	0/1:289:159,130:159:5704:130:4618:-328.787,0,-426.479	0/1:233:128,105:128:4587:105:3671:-260.264,0,-342.854	1/1:36:0,36:0:0:36:1231:-111.085,-10.8371,0	1/1:311:0,311:0:0:311:11036:-993.142,-93.6203,0	1/1:231:0,231:0:0:231:8126:-731.163,-69.5379,0	1/1:212:0,212:0:0:212:7512:-675.42,-63.8184,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/0:25:23,2:23:828:2:72:0,-0.689027,-68.0074	1/1:9:0,9:0:0:9:311:-28.3237,-2.70927,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:198:80,118:80:2845:118:4166:-315.519,0,-196.683	0/1:192:109,83:109:3896:83:2905:-203.888,0,-293.037	0/1:55:27,28:27:972:28:984:-72.3168,0,-71.2413	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:162:68,94:68:2427:94:3367:-254.478,0,-169.918	1/1:19:0,19:0:0:19:671:-60.7158,-5.71957,0	1/1:235:0,235:0:0:235:8289:-746.028,-70.7421,0	1/1:62:0,62:0:0:62:2194:-197.725,-18.6639,0	1/1:69:0,69:0:0:69:2402:-216.436,-20.7711,0	1/1:116:0,116:0:0:116:4096:-368.459,-34.9195,0	1/1:158:0,158:0:0:158:5540:-498.728,-47.5627,0	0/1:322:170,152:170:6055:152:5404:-389.189,0,-448.086	0/1:115:54,61:54:1932:61:2168:-160.766,0,-139.538	0/1:168:85,83:85:3056:83:2922:-212.641,0,-224.695	1/1:118:0,118:0:0:118:4173:-375.756,-35.5215,0	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:152:0,152:0:0:152:5384:-484.692,-45.7566,0	1/1:117:0,117:0:0:117:4149:-373.403,-35.2205,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:168:0,168:0:0:168:5901:-530.886,-50.573,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:19:7,12:7:252:12:432:-33.5016,0,-17.3094	1/1:89:1,88:1:36:88:3143:-279.498,-23.1934,0	1/1:121:2,119:2:72:119:4178:-369.37,-29.5879,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:216:0,216:0:0:216:7739:-696.486,-65.0225,0	1/1:232:0,232:0:0:232:8219:-739.729,-69.839,0	0/1:84:47,37:47:1672:37:1319:-93.7246,0,-125.481	1/1:103:0,103:0:0:103:3619:-325.914,-31.0061,0	1/1:269:1,268:1:36:268:9517:-852.888,-77.3788,0	1/1:178:1,177:1:36:177:6234:-557.559,-49.9851,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	1/1:40:0,40:0:0:40:1423:-128.367,-12.0412,0	0/1:43:23,20:23:828:20:712:-51.4624,0,-61.8998	1/1:18:0,18:0:0:18:615:-55.6678,-5.41854,0	0/1:111:62,49:62:2215:49:1730:-122.566,0,-166.2	0/1:64:30,34:30:1071:34:1209:-89.8461,0,-77.4357	0/1:201:107,94:107:3777:94:3344:-240.669,0,-279.619	0/1:198:114,84:114:4064:84:2950:-206.13,0,-306.342	0/1:152:68,84:68:2436:84:2963:-221.145,0,-173.739	0/1:131:50,81:50:1796:81:2872:-219.281,0,-122.487	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	0/1:125:60,65:60:2152:65:2309:-170.441,0,-156.318	0/1:123:70,53:70:2508:53:1896:-133.891,0,-188.946	0/1:225:129,96:129:4596:96:3429:-241.079,0,-346.072	0/1:60:25,35:25:882:35:1221:-92.1291,0,-61.6347	0/1:87:49,38:49:1764:38:1326:-93.446,0,-131.916	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	0/1:122:55,67:55:1972:67:2383:-177.994,0,-141.029	0/1:22:16,6:16:572:6:212:-12.8021,0,-45.1908	1/1:78:0,78:0:0:78:2743:-247.107,-23.4803,0	1/1:75:0,75:0:0:75:2630:-236.718,-22.5773,0	1/1:48:0,48:0:0:48:1685:-151.934,-14.4494,0	0/1:138:65,73:65:2301:73:2577:-190.635,0,-165.808	0/1:78:56,22:56:1996:22:767:-45.8691,0,-156.434	1/1:119:0,119:0:0:119:4220:-379.982,-35.8226,0	1/1:106:0,106:0:0:106:3736:-336.443,-31.9092,0
chr12	19619522	.	G	T	223045	PASS	AB=0.512627;ABP=8.87794;AC=143;AF=0.785714;AN=182;AO=8201;CIGAR=1X;DP=10281;DPB=10281;DPRA=38.0667;EPP=17811.3;EPPR=4508.82;GTI=1;LEN=1;MEANALT=1.05556;MQM=59.9772;MQMR=60;NS=91;NUMALT=1;ODDS=4.63461;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=291810;QR=72209;RO=2075;RPL=4917;RPP=709.1;RPPR=131.939;RPR=3284;RUN=1;SAF=4917;SAP=709.1;SAR=3284;SRF=1213;SRP=131.939;SRR=862;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:20:6,14:6:203:14:496:-38.9537,0,-12.5806	0/1:140:58,82:58:2054:82:2893:-218.46,0,-142.986	0/1:118:55,63:55:1903:63:2241:-166.431,0,-136.023	1/1:172:0,172:0:0:172:6116:-550.542,-51.7772,0	0/1:22:9,13:9:291:13:453:-34.477,0,-19.8808	0/1:36:13,23:13:456:23:824:-63.6462,0,-30.5362	1/1:56:0,56:0:0:56:2001:-180.363,-16.8577,0	0/1:149:78,71:78:2669:71:2513:-181.437,0,-195.599	1/1:72:0,72:0:0:72:2576:-232.09,-21.6742,0	1/1:160:0,160:0:0:160:5715:-514.468,-48.1648,0	1/1:89:0,89:0:0:89:3184:-286.784,-26.7917,0	1/1:127:0,127:0:0:127:4480:-403.371,-38.2308,0	1/1:124:0,124:0:0:124:4388:-395.095,-37.3277,0	1/1:148:0,148:0:0:148:5188:-467.062,-44.5524,0	1/1:119:0,118:0:0:118:4200:-377.821,-35.5215,0	1/1:109:0,109:0:0:109:3886:-349.926,-32.8123,0	1/1:99:0,99:0:0:99:3494:-314.67,-29.802,0	1/1:83:0,83:0:0:83:2952:-265.904,-24.9855,0	1/1:53:1,52:1:36:52:1854:-163.539,-12.3563,0	0/1:206:87,119:87:3037:119:4220:-317.95,0,-211.549	0/1:171:73,98:73:2527:98:3488:-262.568,0,-176.207	0/1:37:20,17:20:684:17:608:-43.9139,0,-50.7384	1/1:76:0,76:0:0:76:2709:-244.053,-22.8783,0	0/1:106:18,88:18:636:88:3109:-248.127,0,-25.6589	1/1:77:0,77:0:0:77:2753:-248.01,-23.1793,0	0/1:273:133,140:133:4675:140:4988:-366.885,0,-338.736	1/1:239:0,239:0:0:239:8487:-763.826,-71.9462,0	1/1:51:0,51:0:0:51:1811:-163.271,-15.3525,0	0/1:206:123,83:123:4313:83:2967:-205.25,0,-326.339	0/1:93:44,49:44:1539:49:1733:-128.256,0,-110.805	1/1:89:4,85:4:144:85:3031:-259.705,-13.4781,0	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	0/1:7:5,2:5:172:2:72:-4.72951,0,-13.7108	0/1:327:169,158:169:5822:158:5623:-407.748,0,-425.679	0/1:103:59,44:59:2069:44:1525:-106.531,0,-155.474	1/1:72:0,72:0:0:72:2535:-228.402,-21.6742,0	.:.:.:.:.:.:.:.	1/1:198:0,198:0:0:198:7063:-635.73,-59.6039,0	1/1:45:0,45:0:0:45:1611:-145.279,-13.5464,0	1/1:82:0,82:0:0:82:2913:-262.404,-24.6845,0	1/1:135:0,134:0:0:134:4780:-430.039,-40.338,0	0/1:117:48,69:48:1683:69:2463:-186.703,0,-116.535	0/1:106:60,46:60:2084:46:1629:-114.987,0,-155.92	1/1:104:0,104:0:0:104:3701:-333.29,-31.3071,0	1/1:106:0,106:0:0:106:3741:-336.891,-31.9092,0	1/1:119:0,118:0:0:118:4208:-378.538,-35.5215,0	1/1:174:0,174:0:0:174:6202:-558.277,-52.3792,0	0/1:128:63,65:63:2175:65:2328:-171.248,0,-157.484	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:130:0,130:0:0:130:4590:-413.265,-39.1339,0	1/1:30:0,30:0:0:30:1064:-96.0717,-9.0309,0	0/1:4:2,2:2:72:2:57:-4.20919,0,-5.6326	1/1:161:0,161:0:0:161:5744:-517.076,-48.4658,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:14:0,14:0:0:14:491:-44.5211,-4.21442,0	1/1:60:0,59:0:0:59:2120:-190.807,-17.7608,0	0/1:180:80,100:80:2788:100:3558:-266.242,0,-196.977	.:.:.:.:.:.:.:.	1/1:344:0,344:0:0:344:12258:-1103.07,-103.554,0	0/1:221:116,105:116:4051:105:3749:-271.079,0,-298.255	1/1:97:2,95:2:72:95:3368:-296.499,-22.3632,0	0/1:63:28,35:28:951:35:1244:-93.2988,0,-66.931	0/1:137:66,71:66:2324:71:2520:-185.807,0,-168.181	0/1:148:93,55:93:3223:55:1968:-132.843,0,-245.743	1/1:63:0,63:0:0:63:2237:-201.592,-18.9649,0	0/1:75:36,39:36:1237:39:1387:-102.551,0,-89.0519	0/1:140:68,71:68:2378:71:2536:-186.288,0,-172.076	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:89:46,43:46:1550:43:1517:-110.029,0,-112.997	0/1:113:52,61:52:1805:61:2150:-159.748,0,-128.713	0/1:115:57,58:57:1917:58:2041:-149.338,0,-138.181	1/1:204:0,204:0:0:204:7288:-655.971,-61.4101,0	0/1:42:20,22:20:699:22:786:-58.4209,0,-50.5892	0/1:275:128,147:128:4529:147:5246:-389.494,0,-324.998	0/1:7:2,5:2:72:5:176:-14.0778,0,-4.72951	1/1:131:0,131:0:0:131:4660:-419.563,-39.4349,0	1/1:111:0,111:0:0:111:3959:-356.484,-33.4143,0	1/1:229:0,229:0:0:229:8153:-733.787,-68.9359,0	1/1:152:0,152:0:0:152:5425:-488.381,-45.7566,0	1/1:117:0,117:0:0:117:4192:-377.461,-35.2205,0	1/1:110:0,110:0:0:110:3932:-354.072,-33.1133,0	1/1:224:0,224:0:0:224:7973:-717.592,-67.4307,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:104:1,103:1:36:103:3664:-326.365,-27.7088,0	1/1:114:0,114:0:0:114:4075:-366.936,-34.3174,0	1/1:73:0,73:0:0:73:2607:-234.878,-21.9752,0	0/1:136:68,68:68:2378:68:2425:-177.564,0,-173.339	0/1:111:74,37:74:2603:37:1319:-85.5968,0,-201.106	1/1:279:0,279:0:0:279:9955:-895.891,-83.9874,0	1/1:205:0,205:0:0:205:7333:-660.018,-61.7112,0
chr12	19715098	.	G	A	7647.68	PASS	AB=0.531525;ABP=15.7432;AC=39;AF=0.209677;AN=186;AO=800;CIGAR=1X;DP=2927;DPB=2927;DPRA=1.86296;EPP=1740.19;EPPR=4617.39;GTI=2;LEN=1;MEANALT=1.04762;MQM=29.1313;MQMR=40.2786;NS=93;NUMALT=1;ODDS=0.500561;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=28266;QR=75969;RO=2125;RPL=800;RPP=1740.19;RPPR=4617.39;RPR=0;RUN=1;SAF=0;SAP=1740.19;SAR=800;SRF=0;SRP=4617.39;SRR=2125;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:19:10,9:10:360:9:320:-14.8735,0,-24.0561	0/1:25:14,11:14:492:11:392:-17.8422,0,-34.7215	0/1:21:6,15:6:216:15:540:-28.4768,0,-12.3102	0/0:60:60,0:60:2128:0:0:0,-18.0618,-185.715	0/1:20:6,14:6:212:14:492:-28.5072,0,-12.6873	0/1:20:6,14:6:216:14:496:-26.3737,0,-11.0916	0/0:37:37,0:37:1324:0:0:0,-11.1381,-114.805	0/1:28:14,14:14:504:14:500:-24.0161,0,-34.5133	0/0:53:53,0:53:1908:0:0:0,-15.9546,-159.365	0/0:33:33,0:33:1176:0:0:0,-9.93399,-102.822	0/0:10:10,0:10:360:0:0:0,-3.0103,-30.0634	0/0:24:24,0:24:864:0:0:0,-7.22472,-72.7615	0/0:16:16,0:16:576:0:0:0,-4.81648,-48.5299	0/0:14:14,0:14:500:0:0:0,-4.21442,-42.7837	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.5697	0/0:10:10,0:10:360:0:0:0,-3.0103,-31.375	0/0:11:11,0:11:396:0:0:0,-3.31133,-33.5732	0/0:6:6,0:6:212:0:0:0,-1.80618,-18.0654	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.3876	0/1:45:25,19:25:900:19:680:-35.8567,0,-64.3688	0/1:68:36,32:36:1292:32:1106:-57.0208,0,-91.5135	0/1:46:11,35:11:396:35:1252:-81.2966,0,-21.5138	0/0:84:83,1:83:2953:1:36:0,-22.3838,-252.828	0/0:44:40,4:40:1417:4:144:0,-3.12137,-111.482	0/0:10:10,0:10:360:0:0:0,-3.0103,-31.4597	0/1:117:57,60:57:2028:60:2118:-125.908,0,-143.388	0/0:80:80,0:80:2857:0:0:0,-24.0824,-244.605	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.0641	0/1:83:42,41:42:1508:41:1453:-83.9103,0,-106.801	0/1:71:41,30:41:1460:30:1042:-51.022,0,-103.79	0/0:113:112,1:112:4020:1:36:0,-31.1136,-344.234	0/1:6:2,4:2:72:4:144:-8.31777,0,-4.69381	0/1:10:6,4:6:208:4:144:-7.11365,0,-15.4058	.:.:.:.:.:.:.:.	0/1:7:3,4:3:108:4:129:-6.82609,0,-7.37807	0/1:12:4,8:4:144:8:280:-14.9643,0,-8.92176	0/1:38:16,22:16:576:22:784:-48.2768,0,-38.8657	0/1:63:30,33:30:1080:33:1164:-61.9718,0,-74.6518	0/0:9:9,0:9:320:0:0:0,-2.70927,-26.7636	1/1:1:0,1:0:0:1:36:-2.7362,-0.30103,0	0/0:47:47,0:47:1665:0:0:0,-14.1484,-142.062	0/0:8:8,0:8:288:0:0:0,-2.40824,-23.9308	0/0:29:29,0:29:1040:0:0:0,-8.72987,-90.22	0/0:10:10,0:10:352:0:0:0,-3.0103,-31.0182	0/1:10:3,7:3:108:7:252:-15.2628,0,-6.79726	0/1:76:29,47:29:1040:47:1645:-103.56,0,-68.1352	0/0:25:25,0:25:892:0:0:0,-7.52575,-75.3758	0/0:43:43,0:43:1548:0:0:0,-12.9443,-135.233	0/0:16:16,0:16:568:0:0:0,-4.81648,-50.1014	0/0:43:43,0:43:1540:0:0:0,-12.9443,-134.498	0/1:62:27,35:27:964:35:1252:-77.1544,0,-66.9283	0/0:4:4,0:4:144:0:0:0,-1.20412,-12.96	0/0:58:58,0:58:2073:0:0:0,-17.4597,-173.363	0/0:36:36,0:36:1273:0:0:0,-10.8371,-112.536	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.3876	0/0:17:17,0:17:612:0:0:0,-5.11751,-53.1992	0/0:14:14,0:14:481:0:0:0,-4.21442,-42.3997	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.4487	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.1162	0/0:32:32,0:32:1148:0:0:0,-9.63296,-98.4054	0/1:20:11,9:11:396:9:324:-17.7821,0,-28.9626	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.5027	0/0:38:38,0:38:1345:0:0:0,-11.4391,-118.028	0/1:91:45,46:45:1604:46:1625:-91.4101,0,-111.84	0/0:20:19,1:19:680:1:36:0,-3.2844,-56.3323	0/1:14:6,8:6:216:8:284:-16.4589,0,-15.0504	0/1:89:34,55:34:1216:55:1923:-113.227,0,-78.0623	0/1:69:29,40:29:1025:40:1425:-83.0731,0,-69.3993	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.2178	0/1:26:16,10:16:576:10:345:-14.5952,0,-41.1329	0/1:20:6,14:6:216:14:500:-32.631,0,-13.1086	0/0:14:14,0:14:504:0:0:0,-4.21442,-44.3968	0/1:73:39,34:39:1404:34:1205:-56.0055,0,-94.864	1/1:8:0,7:0:0:7:252:-16.1199,-2.10721,0	0/1:103:53,50:53:1885:50:1764:-91.7346,0,-131.633	0/0:32:32,0:32:1152:0:0:0,-9.63296,-100.415	0/1:32:15,17:15:540:17:574:-28.2887,0,-35.9413	0/1:32:19,13:19:680:13:460:-20.4585,0,-47.6237	0/1:15:8,7:8:288:7:252:-11.691,0,-20.214	0/0:15:15,0:15:540:0:0:0,-4.51545,-46.9811	0/0:33:33,0:33:1180:0:0:0,-9.93399,-98.859	0/0:50:50,0:50:1788:0:0:0,-15.0515,-156.035	0/0:27:26,1:26:936:1:36:0,-5.22505,-79.0056	0/0:10:10,0:10:360:0:0:0,-3.0103,-31.8307	0/0:10:10,0:10:360:0:0:0,-3.0103,-31.8746	0/0:24:24,0:24:860:0:0:0,-7.22472,-75.1546	0/0:9:9,0:9:324:0:0:0,-2.70927,-27.0231	0/0:22:22,0:22:788:0:0:0,-6.62266,-67.1556	0/0:22:22,0:22:792:0:0:0,-6.62266,-66.6734	0/0:13:13,0:13:468:0:0:0,-3.91339,-40.5739	0/1:31:17,14:17:612:14:500:-25.3439,0,-43.8672	0/1:13:4,9:4:144:9:324:-19.8893,0,-9.0466	0/0:42:42,0:42:1492:0:0:0,-12.6433,-129.947	0/0:31:31,0:31:1112:0:0:0,-9.33193,-96.5301
chr12	19934797	.	G	A	111542	PASS	AB=0.609212;ABP=290.911;AC=149;AF=0.792553;AN=188;AO=5267;CIGAR=1X;DP=6361;DPB=6361;DPRA=68.3871;EPP=10857.1;EPPR=2346.1;GTI=3;LEN=1;MEANALT=1.03226;MQM=42.2848;MQMR=59.9973;NS=94;NUMALT=1;ODDS=0.524306;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188543;QR=38987;RO=1091;RPL=68;RPP=10857.1;RPPR=2346.1;RPR=5199;RUN=1;SAF=0;SAP=11440.2;SAR=5267;SRF=0;SRP=2372.09;SRR=1091;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:10,27:10:356:27:961:-73.8328,0,-21.2431	0/1:60:12,48:12:432:48:1728:-133.207,0,-21.1594	0/1:110:42,68:42:1512:68:2436:-180.772,0,-103.261	1/1:206:0,206:0:0:206:7389:-643.104,-62.0122,0	0/1:48:18,30:18:631:30:1071:-79.7972,0,-42.6662	0/1:30:6,24:6:216:24:864:-67.3886,0,-10.7596	1/1:42:1,41:1:36:41:1464:-124.009,-9.04499,0	0/1:72:29,43:29:1019:43:1548:-114.435,0,-70.3471	1/1:57:0,57:0:0:57:2044:-180.322,-17.1587,0	1/1:51:0,51:0:0:51:1836:-160.306,-15.3525,0	1/1:26:0,26:0:0:26:932:-81.567,-7.82678,0	1/1:62:0,62:0:0:62:2210:-194.421,-18.6639,0	1/1:47:0,47:0:0:47:1649:-143.885,-14.1484,0	1/1:40:0,40:0:0:40:1432:-125.945,-12.0412,0	1/1:51:0,51:0:0:51:1828:-160.053,-15.3525,0	1/1:40:0,40:0:0:40:1436:-126.269,-12.0412,0	1/1:20:0,20:0:0:20:720:-63.7439,-6.0206,0	1/1:23:0,23:0:0:23:813:-69.7267,-6.92369,0	1/1:14:0,14:0:0:14:489:-42.8645,-4.21442,0	0/1:103:38,65:38:1368:65:2316:-172.043,0,-92.4147	0/1:100:26,73:26:932:73:2612:-199.48,0,-54.0371	0/1:93:52,41:52:1859:41:1468:-102.139,0,-139.593	1/1:122:0,122:0:0:122:4348:-378.964,-36.7257,0	1/1:31:0,31:0:0:31:1103:-96.4002,-9.33193,0	1/1:49:0,49:0:0:49:1764:-150.741,-14.7505,0	0/1:166:66,100:66:2368:100:3592:-264.945,0,-163.407	1/1:203:0,203:0:0:203:7255:-636.911,-61.1091,0	1/1:26:0,26:0:0:26:919:-80.9489,-7.82678,0	0/1:163:63,100:63:2260:100:3583:-267.314,0,-154.595	0/1:76:13,63:13:468:63:2264:-175.148,0,-19.5814	1/1:112:1,111:1:36:111:3979:-343.822,-30.1171,0	1/1:2:0,2:0:0:2:72:-6.68992,-0.60206,0	0/1:8:2,6:2:72:6:216:-16.9573,0,-4.42848	1/1:8:0,8:0:0:8:288:-25.7034,-2.40824,0	0/1:3:2,1:2:72:1:36:-2.61792,0,-5.93363	0/1:11:3,8:3:99:8:284:-22.0797,0,-5.92525	0/1:119:62,57:62:2220:57:2040:-144.962,0,-164.242	0/1:90:32,58:32:1152:58:2071:-154.977,0,-76.8974	1/1:27:0,27:0:0:27:972:-85.247,-8.12781,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	1/1:115:0,115:0:0:115:4116:-359.371,-34.6185,0	1/1:26:0,26:0:0:26:936:-82.1849,-7.82678,0	1/1:184:0,184:0:0:184:6581:-572.748,-55.3895,0	1/1:38:0,38:0:0:38:1351:-118.354,-11.4391,0	0/1:32:18,14:18:639:14:504:-34.8513,0,-48.2053	0/1:52:24,28:24:864:28:1000:-72.6023,0,-62.429	1/1:108:0,108:0:0:108:3848:-337.58,-32.5112,0	1/1:156:0,156:0:0:156:5578:-485.732,-46.9607,0	1/1:63:0,63:0:0:63:2256:-196.329,-18.9649,0	1/1:93:0,93:0:0:93:3339:-291.767,-27.9958,0	0/1:58:22,36:22:788:36:1288:-96.8318,0,-53.7851	1/1:6:0,6:0:0:6:216:-19.1923,-1.80618,0	1/1:128:0,128:0:0:128:4584:-403.509,-38.5318,0	1/1:63:0,63:0:0:63:2260:-199.25,-18.9649,0	0/1:11:1,10:1:36:10:360:-28.7436,0,-0.286945	0/1:118:43,75:43:1531:75:2700:-201.246,0,-102.561	1/1:41:0,41:0:0:41:1466:-128.077,-12.3422,0	1/1:3:0,3:0:0:3:104:-9.56762,-0.90309,0	1/1:3:0,3:0:0:3:108:-9.90114,-0.90309,0	1/1:81:0,81:0:0:81:2888:-253.08,-24.3834,0	0/1:107:53,54:53:1904:54:1944:-136.385,0,-139.428	1/1:7:0,7:0:0:7:252:-22.434,-2.10721,0	1/1:147:0,147:0:0:147:5260:-463.253,-44.2514,0	0/1:170:73,97:73:2612:97:3475:-252.951,0,-184.153	1/1:35:1,34:1:36:34:1224:-104.45,-6.93778,0	0/1:80:32,48:32:1144:48:1724:-126.807,0,-79.1871	0/1:154:54,100:54:1920:100:3579:-264.784,0,-126.719	0/1:101:55,46:55:1976:46:1648:-113.466,0,-147.711	1/1:21:0,21:0:0:21:756:-65.5318,-6.32163,0	1/1:18:1,17:1:36:17:612:-50.3763,-1.82027,0	0/1:30:12,18:12:432:18:648:-47.7167,0,-30.1903	1/1:16:0,16:0:0:16:576:-49.7018,-4.81648,0	0/1:63:15,48:15:536:48:1728:-132.255,0,-29.6099	0/1:50:26,24:26:920:24:851:-59.7231,0,-68.0656	0/1:101:33,68:33:1172:68:2431:-181.76,0,-75.3835	1/1:132:0,132:0:0:132:4732:-413.75,-39.736,0	0/1:96:44,52:44:1567:52:1864:-134.371,0,-112.422	0/1:54:27,26:27:972:26:932:-66.3066,0,-71.6286	0/1:9:1,8:1:36:8:288:-22.9941,0,-0.889005	1/1:97:0,97:0:0:97:3461:-304.104,-29.1999,0	0/1:100:23,77:23:824:77:2759:-211.521,0,-44.3788	1/1:145:0,145:0:0:145:5196:-454.142,-43.6494,0	1/1:61:1,60:1:36:60:2141:-183.175,-14.7646,0	1/1:47:0,47:0:0:47:1692:-147.995,-14.1484,0	1/1:29:0,29:0:0:29:1044:-91.8038,-8.72987,0	1/1:90:1,89:1:36:89:3181:-273.092,-23.4944,0	1/1:20:0,20:0:0:20:720:-63.7966,-6.0206,0	1/1:42:0,42:0:0:42:1499:-132.494,-12.6433,0	1/1:45:0,45:0:0:45:1607:-141.391,-13.5464,0	1/1:24:0,24:0:0:24:849:-73.4425,-7.22472,0	0/1:49:22,27:22:777:27:968:-70.2833,0,-55.4999	0/1:55:30,25:30:1053:25:900:-62.6789,0,-78.5219	1/1:147:0,147:0:0:147:5251:-458.068,-44.2514,0	1/1:91:0,90:0:0:90:3236:-281.409,-27.0927,0
chr12	19934806	.	T	A	107729	PASS	AB=0.605842;ABP=272.834;AC=149;AF=0.801075;AN=186;AO=5230;CIGAR=1X;DP=6329;DPB=6329;DPRA=0;EPP=11359.8;EPPR=2372.12;GTI=2;LEN=1;MEANALT=1;MQM=42.2713;MQMR=59.9809;NS=93;NUMALT=1;ODDS=0.574336;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187327;QR=39437;RO=1099;RPL=5230;RPP=11359.8;RPPR=2372.12;RPR=0;RUN=1;SAF=0;SAP=11359.8;SAR=5230;SRF=0;SRP=2389.46;SRR=1099;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:37:10,27:10:360:27:968:-74.1338,0,-21.6062	0/1:59:12,47:12:432:47:1683:-129.719,0,-21.4604	0/1:108:42,66:42:1512:66:2372:-175.689,0,-103.863	1/1:207:0,207:0:0:207:7402:-644.213,-62.3132,0	0/1:47:17,30:17:608:30:1080:-80.8495,0,-40.9036	0/1:29:6,23:6:216:23:824:-64.2005,0,-11.0606	1/1:42:1,41:1:36:41:1472:-124.648,-9.04499,0	0/1:72:29,43:29:1040:43:1548:-114.435,0,-72.2402	1/1:58:0,58:0:0:58:2071:-182.678,-17.4597,0	1/1:52:0,52:0:0:52:1868:-163.148,-15.6536,0	1/1:26:0,26:0:0:26:936:-81.8871,-7.82678,0	1/1:61:0,61:0:0:61:2196:-193.167,-18.3628,0	1/1:48:0,48:0:0:48:1716:-149.77,-14.4494,0	1/1:41:0,41:0:0:41:1461:-128.469,-12.3422,0	1/1:52:0,52:0:0:52:1863:-163.485,-15.6536,0	1/1:41:0,41:0:0:41:1464:-128.814,-12.3422,0	1/1:20:0,20:0:0:20:720:-63.7439,-6.0206,0	1/1:24:0,24:0:0:24:864:-74.1836,-7.22472,0	1/1:14:0,14:0:0:14:504:-44.156,-4.21442,0	0/1:104:40,64:40:1440:64:2300:-170.014,0,-98.5906	0/1:100:27,73:27:968:73:2615:-199.747,0,-57.3344	0/1:92:51,41:51:1836:41:1476:-103.048,0,-137.826	1/1:119:0,119:0:0:119:4259:-370.634,-35.8226,0	1/1:32:0,32:0:0:32:1147:-100.284,-9.63296,0	1/1:48:0,48:0:0:48:1724:-147.468,-14.4494,0	0/1:166:68,98:68:2429:98:3501:-257.369,0,-168.893	1/1:199:0,199:0:0:199:7134:-626.115,-59.905,0	1/1:26:0,26:0:0:26:930:-81.7611,-7.82678,0	0/1:163:62,101:62:2217:101:3628:-271.258,0,-150.725	0/1:73:13,60:13:453:60:2147:-166.394,0,-19.1244	1/1:108:1,107:1:36:107:3828:-330.672,-28.913,0	1/1:2:0,2:0:0:2:68:-6.35344,-0.60206,0	0/1:8:2,6:2:72:6:216:-16.9573,0,-4.42848	1/1:8:0,8:0:0:8:288:-25.7034,-2.40824,0	0/1:3:2,1:2:72:1:36:-2.61792,0,-5.93363	0/1:11:3,8:3:108:8:288:-22.3828,0,-6.76384	0/1:123:65,58:65:2340:58:2080:-147.217,0,-173.832	0/1:90:32,58:32:1148:58:2084:-156.046,0,-76.5371	1/1:28:0,28:0:0:28:1008:-88.416,-8.42884,0	.:.:.:.:.:.:.:.	1/1:113:0,113:0:0:113:4051:-353.339,-34.0164,0	1/1:26:0,26:0:0:26:936:-82.1849,-7.82678,0	1/1:183:0,183:0:0:183:6550:-570.406,-55.0885,0	1/1:36:0,36:0:0:36:1281:-112.144,-10.8371,0	0/1:33:19,14:19:680:14:504:-34.5503,0,-51.5952	0/1:53:24,29:24:864:29:1036:-75.5141,0,-62.128	1/1:106:0,106:0:0:106:3797:-332.581,-31.9092,0	1/1:153:0,153:0:0:153:5465:-475.751,-46.0576,0	1/1:64:0,64:0:0:64:2283:-198.261,-19.2659,0	1/1:93:0,93:0:0:93:3331:-290.792,-27.9958,0	0/1:59:22,37:22:788:37:1332:-100.388,0,-53.484	1/1:6:0,6:0:0:6:216:-19.1923,-1.80618,0	1/1:128:0,128:0:0:128:4588:-403.857,-38.5318,0	1/1:59:0,59:0:0:59:2111:-186.481,-17.7608,0	0/1:11:1,10:1:36:10:360:-28.7436,0,-0.286945	0/1:114:42,72:42:1512:72:2565:-190.669,0,-102.057	1/1:40:0,40:0:0:40:1421:-123.839,-12.0412,0	1/1:2:0,2:0:0:2:68:-6.37409,-0.60206,0	1/1:3:0,3:0:0:3:108:-9.90114,-0.90309,0	1/1:80:0,80:0:0:80:2870:-251.133,-24.0824,0	0/1:108:53,55:53:1908:55:1966:-138.433,0,-139.486	1/1:6:0,6:0:0:6:216:-19.2816,-1.80618,0	1/1:145:0,145:0:0:145:5205:-458.281,-43.6494,0	0/1:171:73,98:73:2628:98:3520:-256.134,0,-185.29	1/1:35:1,34:1:36:34:1209:-103.165,-6.93778,0	0/1:78:32,46:32:1133:46:1652:-121.079,0,-78.7963	0/1:155:54,101:54:1929:101:3614:-267.949,0,-127.225	0/1:99:55,44:55:1976:44:1576:-107.763,0,-148.313	1/1:20:0,20:0:0:20:720:-62.3625,-6.0206,0	1/1:18:1,17:1:32:17:608:-50.4544,-2.21923,0	0/1:30:12,18:12:432:18:644:-47.3818,0,-30.1903	1/1:17:0,17:0:0:17:595:-51.4528,-5.11751,0	0/1:64:16,48:16:576:48:1715:-131.071,0,-32.9091	0/1:50:26,24:26:936:24:864:-60.7954,0,-69.508	0/1:102:34,68:34:1224:68:2425:-181.525,0,-79.762	1/1:133:0,133:0:0:133:4757:-415.955,-40.037,0	0/1:96:43,53:43:1544:53:1892:-136.913,0,-110.354	0/1:54:28,26:28:1000:26:932:-66.2201,0,-73.989	0/1:9:1,8:1:36:8:284:-22.6709,0,-0.889005	1/1:98:0,98:0:0:98:3491:-307.471,-29.5009,0	0/1:98:23,75:23:828:75:2688:-205.894,0,-45.3432	1/1:143:0,143:0:0:143:5140:-448.938,-43.0473,0	1/1:63:1,62:1:36:62:2224:-190.429,-15.3666,0	1/1:48:0,48:0:0:48:1728:-151.164,-14.4494,0	1/1:28:0,28:0:0:28:1004:-88.3239,-8.42884,0	1/1:89:1,88:1:36:88:3134:-269.035,-23.1934,0	1/1:20:0,20:0:0:20:720:-63.7966,-6.0206,0	1/1:40:0,40:0:0:40:1423:-125.84,-12.0412,0	1/1:45:0,45:0:0:45:1616:-142.141,-13.5464,0	1/1:24:0,24:0:0:24:864:-74.7538,-7.22472,0	0/1:48:22,26:22:792:26:936:-67.7355,0,-57.1562	0/1:56:32,24:32:1152:24:864:-59.2089,0,-87.1325	1/1:145:0,145:0:0:145:5191:-452.667,-43.6494,0	1/1:91:0,91:0:0:91:3268:-284.029,-27.3937,0
chr12	19934813	.	A	G	109233	PASS	AB=0.609582;ABP=294.741;AC=149;AF=0.792553;AN=188;AO=5303;CIGAR=1X;DP=6404;DPB=6404;DPRA=68.8495;EPP=11518.3;EPPR=2389.46;GTI=4;LEN=1;MEANALT=1.02151;MQM=42.2832;MQMR=59.9754;NS=94;NUMALT=1;ODDS=0.0650217;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=189984;QR=39419;RO=1099;RPL=5303;RPP=11518.3;RPPR=2389.46;RPR=0;RUN=1;SAF=0;SAP=11518.3;SAR=5303;SRF=0;SRP=2389.46;SRR=1099;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:36:10,26:10:360:26:917:-70.3168,0,-21.9072	0/1:60:12,48:12:424:48:1715:-132.287,0,-20.4346	0/1:112:42,70:42:1508:70:2508:-186.512,0,-102.299	1/1:211:1,209:1:36:209:7508:-649.03,-59.9755,0	0/1:47:17,30:17:608:30:1080:-80.8495,0,-40.9036	0/1:31:6,25:6:216:25:892:-69.6162,0,-10.4586	1/1:42:1,41:1:36:41:1468:-124.328,-9.04499,0	0/1:73:29,43:29:1044:43:1517:-111.499,0,-72.2483	1/1:57:0,57:0:0:57:2048:-180.579,-17.1587,0	1/1:52:0,52:0:0:52:1857:-162.19,-15.6536,0	1/1:25:0,25:0:0:25:900:-78.7346,-7.52575,0	1/1:63:0,63:0:0:63:2268:-199.441,-18.9649,0	1/1:47:0,47:0:0:47:1692:-147.595,-14.1484,0	1/1:41:0,41:0:0:41:1476:-129.753,-12.3422,0	1/1:52:0,52:0:0:52:1851:-162.366,-15.6536,0	1/1:42:0,42:0:0:42:1504:-132.322,-12.6433,0	1/1:20:0,20:0:0:20:720:-63.7439,-6.0206,0	1/1:24:0,24:0:0:24:860:-73.8633,-7.22472,0	1/1:14:0,14:0:0:14:500:-43.8347,-4.21442,0	0/1:105:40,65:40:1425:65:2328:-171.146,0,-96.9373	0/1:102:27,75:27:964:75:2689:-206.106,0,-56.3718	0/1:93:51,42:51:1824:42:1508:-105.602,0,-136.445	1/1:123:0,123:0:0:123:4419:-384.446,-37.0267,0	1/1:32:0,32:0:0:32:1148:-100.304,-9.63296,0	1/1:50:0,50:0:0:50:1796:-153.033,-15.0515,0	0/1:167:68,99:68:2444:99:3535:-260.184,0,-169.943	1/1:204:0,204:0:0:204:7311:-641.594,-61.4101,0	1/1:25:0,25:0:0:25:892:-78.5316,-7.52575,0	0/1:164:63,101:63:2268:101:3624:-270.63,0,-155.013	0/1:76:13,63:13:468:63:2251:-174.487,0,-19.5814	1/1:113:1,112:1:36:112:4020:-347.619,-30.4181,0	1/1:2:0,2:0:0:2:72:-6.68992,-0.60206,0	0/1:8:2,6:2:72:6:212:-16.6326,0,-4.42848	1/1:8:0,8:0:0:8:288:-25.7034,-2.40824,0	0/1:3:2,1:2:72:1:36:-2.61792,0,-5.93363	0/1:11:3,8:3:108:8:288:-22.3828,0,-6.76384	0/1:125:65,60:65:2336:60:2160:-153.634,0,-172.87	0/1:89:32,57:32:1148:57:2048:-153.154,0,-76.8382	1/1:28:0,28:0:0:28:1004:-88.096,-8.42884,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:114:0,114:0:0:114:4096:-357.385,-34.3174,0	1/1:26:0,26:0:0:26:936:-82.1849,-7.82678,0	1/1:186:0,186:0:0:186:6653:-579.085,-55.9916,0	1/1:38:0,38:0:0:38:1368:-119.788,-11.4391,0	0/1:33:19,14:19:684:14:485:-32.9626,0,-51.9563	0/1:54:24,30:24:864:30:1076:-78.6764,0,-61.8269	1/1:108:0,108:0:0:108:3865:-338.356,-32.5112,0	1/1:156:0,156:0:0:156:5585:-485.973,-46.9607,0	1/1:62:0,62:0:0:62:2228:-193.106,-18.6639,0	1/1:92:0,92:0:0:92:3291:-287.315,-27.6948,0	0/1:59:22,37:22:792:37:1324:-99.7336,0,-53.8449	1/1:6:0,6:0:0:6:216:-19.1923,-1.80618,0	1/1:130:0,130:0:0:130:4676:-411.492,-39.1339,0	1/1:62:0,62:0:0:62:2224:-196.118,-18.6639,0	0/1:11:1,10:1:36:10:356:-28.4213,0,-0.286945	0/1:117:43,74:43:1540:74:2641:-196.456,0,-103.673	1/1:41:0,41:0:0:41:1464:-127.64,-12.3422,0	1/1:3:0,3:0:0:3:108:-9.91271,-0.90309,0	1/1:3:0,3:0:0:3:108:-9.90114,-0.90309,0	1/1:81:0,81:0:0:81:2912:-255.043,-24.3834,0	0/1:108:54,54:54:1940:54:1927:-135.269,0,-142.365	1/1:7:0,7:0:0:7:252:-22.434,-2.10721,0	1/1:148:0,148:0:0:148:5300:-466.66,-44.5524,0	0/1:169:73,96:73:2624:96:3429:-249.258,0,-185.533	1/1:35:1,34:1:36:34:1224:-104.45,-6.93778,0	0/1:81:33,48:33:1180:48:1724:-126.483,0,-82.1246	0/1:154:54,100:54:1944:100:3577:-264.632,0,-128.877	0/1:102:54,48:54:1936:48:1701:-117.894,0,-143.811	1/1:22:0,22:0:0:22:792:-68.701,-6.62266,0	1/1:19:1,18:1:36:18:648:-53.5453,-2.1213,0	0/1:30:12,18:12:428:18:644:-47.3882,0,-29.8279	1/1:17:0,17:0:0:17:612:-52.0809,-5.11751,0	0/1:64:16,48:16:576:48:1725:-131.869,0,-32.9091	0/1:49:25,24:25:885:24:860:-60.7762,0,-65.2161	0/1:103:32,71:32:1144:71:2509:-188.899,0,-72.2634	1/1:130:0,130:0:0:130:4668:-408.074,-39.1339,0	0/1:94:43,51:43:1533:51:1820:-131.077,0,-109.963	0/1:54:28,26:28:1008:26:936:-66.5403,0,-74.6229	0/1:9:1,8:1:36:8:288:-22.9941,0,-0.889005	1/1:99:0,99:0:0:99:3536:-310.499,-29.802,0	0/1:99:22,77:22:792:77:2763:-212.141,0,-41.8037	1/1:146:0,146:0:0:146:5215:-455.704,-43.9504,0	1/1:63:1,62:1:36:62:2220:-190.111,-15.3666,0	1/1:48:0,48:0:0:48:1728:-151.164,-14.4494,0	1/1:30:0,30:0:0:30:1072:-94.3346,-9.0309,0	1/1:88:1,87:1:36:87:3124:-268.246,-22.8924,0	1/1:20:0,20:0:0:20:720:-63.7966,-6.0206,0	1/1:42:0,42:0:0:42:1504:-132.936,-12.6433,0	1/1:45:0,45:0:0:45:1620:-142.461,-13.5464,0	1/1:24:0,24:0:0:24:864:-74.7538,-7.22472,0	0/1:49:22,27:22:788:27:968:-70.2833,0,-56.4943	0/1:56:31,25:31:1112:25:896:-62.0668,0,-83.5337	1/1:148:0,148:0:0:148:5297:-462.655,-44.5524,0	1/1:92:0,92:0:0:92:3299:-286.797,-27.6948,0
chr12	19934826	.	CCT	CCC	106640	PASS	AB=0.603306;ABP=260.985;AC=149;AF=0.792553;AN=188;AO=5198;CIGAR=2M1X;DP=6333;DPB=6333;DPRA=68.086;EPP=11290.3;EPPR=2398.14;GTI=4;LEN=1;MEANALT=1.30108;MQM=42.2659;MQMR=59.9937;NS=94;NUMALT=1;ODDS=0.157849;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185879;QR=39135;RO=1103;RPL=5198;RPP=11290.3;RPPR=2398.14;RPR=0;RUN=1;SAF=0;SAP=11290.3;SAR=5198;SRF=0;SRP=2398.14;SRR=1103;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:35:10,25:10:360:25:892:-68.4369,0,-22.2083	0/1:58:12,44:12:414:44:1584:-121.795,0,-20.3921	0/1:109:42,67:42:1503:67:2385:-176.607,0,-102.752	1/1:209:0,209:0:0:209:7477:-650.158,-62.9153,0	0/1:47:18,29:18:626:29:1036:-77.0406,0,-42.5146	0/1:31:5,25:5:180:25:900:-70.198,0,-7.16134	1/1:42:1,40:1:36:40:1413:-120.01,-9.09118,0	0/1:72:29,43:29:1040:43:1495:-109.918,0,-72.2404	1/1:57:0,57:0:0:57:2048:-180.579,-17.1587,0	1/1:52:0,52:0:0:52:1872:-163.458,-15.6536,0	1/1:24:0,24:0:0:24:849:-74.2368,-7.22472,0	1/1:61:0,60:0:0:60:2148:-188.671,-18.0618,0	1/1:46:0,45:0:0:45:1608:-140.066,-13.5464,0	1/1:40:0,40:0:0:40:1421:-124.946,-12.0412,0	1/1:48:0,48:0:0:48:1709:-150.122,-14.4494,0	1/1:41:0,41:0:0:41:1461:-128.473,-12.3422,0	1/1:20:0,20:0:0:20:720:-63.7439,-6.0206,0	1/1:24:0,24:0:0:24:860:-73.8633,-7.22472,0	1/1:13:0,13:0:0:13:468:-40.9867,-3.91339,0	0/1:106:40,66:40:1410:66:2360:-173.902,0,-95.2862	0/1:101:27,73:27:938:73:2620:-199.892,0,-54.2729	0/1:93:52,41:52:1826:41:1461:-101.421,0,-136.622	1/1:119:0,119:0:0:119:4276:-371.819,-35.8226,0	1/1:31:0,31:0:0:31:1112:-97.1515,-9.33193,0	1/1:50:0,50:0:0:50:1792:-152.929,-15.0515,0	0/1:167:67,99:67:2394:99:3556:-261.826,0,-165.386	1/1:202:0,200:0:0:200:7184:-630.22,-60.206,0	1/1:26:0,25:0:0:25:900:-78.7358,-7.52575,0	0/1:164:63,101:63:2215:101:3617:-269.987,0,-150.242	0/1:75:13,62:13:455:62:2198:-170.203,0,-18.7039	1/1:112:1,111:1:36:111:3939:-340.447,-30.1171,0	1/1:2:0,2:0:0:2:72:-6.68992,-0.60206,0	0/1:8:2,6:2:72:6:216:-16.9573,0,-4.42848	1/1:8:0,8:0:0:8:288:-25.7034,-2.40824,0	0/1:3:2,1:2:72:1:36:-2.61792,0,-5.93363	0/1:11:3,7:3:100:7:252:-19.2899,0,-6.04956	0/1:123:65,58:65:2328:58:2084:-147.567,0,-172.753	0/1:91:32,59:32:1142:59:2116:-158.595,0,-75.6952	1/1:28:0,28:0:0:28:1004:-88.096,-8.42884,0	0/0:1:1,0:1:33:0:0:0,-0.30103,-3.29913	1/1:115:0,115:0:0:115:4105:-358.611,-34.6185,0	1/1:26:0,26:0:0:26:928:-81.5446,-7.82678,0	1/1:184:0,184:0:0:184:6602:-574.104,-55.3895,0	1/1:37:0,37:0:0:37:1328:-116.284,-11.1381,0	0/1:33:19,14:19:669:14:504:-34.5503,0,-50.601	0/1:53:24,28:24:857:28:977:-70.3911,0,-61.4548	1/1:104:0,102:0:0:102:3634:-318.181,-30.7051,0	1/1:151:1,148:1:28:148:5266:-456.94,-42.3536,0	1/1:62:0,62:0:0:62:2201:-191.35,-18.6639,0	1/1:91:0,90:0:0:90:3205:-279.692,-27.0927,0	0/1:57:22,35:22:788:35:1256:-94.2752,0,-54.0863	1/1:6:0,6:0:0:6:216:-19.1923,-1.80618,0	1/1:130:0,129:0:0:129:4628:-407.147,-38.8329,0	1/1:63:0,58:0:0:58:2065:-182.188,-17.4597,0	0/1:11:1,10:1:34:10:360:-28.7436,0,-0.0875809	0/1:118:43,75:43:1528:75:2685:-199.962,0,-102.291	1/1:37:0,36:0:0:36:1288:-111.69,-10.8371,0	1/1:2:0,2:0:0:2:72:-6.71863,-0.60206,0	1/1:3:0,3:0:0:3:108:-9.90114,-0.90309,0	1/1:81:0,81:0:0:81:2882:-252.477,-24.3834,0	0/1:106:54,52:54:1933:52:1872:-130.34,0,-142.338	1/1:7:0,7:0:0:7:248:-22.1194,-2.10721,0	1/1:147:0,147:0:0:147:5246:-462.251,-44.2514,0	0/1:171:73,98:73:2609:98:3493:-254.107,0,-183.582	1/1:34:1,32:1:36:32:1152:-98.1795,-6.68835,0	0/1:79:33,46:33:1181:46:1648:-120.452,0,-82.817	0/1:155:53,101:53:1881:101:3613:-267.524,0,-122.874	0/1:102:55,47:55:1954:47:1665:-114.739,0,-145.428	1/1:22:0,22:0:0:22:788:-68.3806,-6.62266,0	1/1:17:1,16:1:36:16:572:-46.8863,-1.51924,0	0/1:30:12,18:12:424:18:648:-47.7167,0,-29.4649	1/1:16:0,16:0:0:16:576:-49.7018,-4.81648,0	0/1:62:15,47:15:527:47:1692:-129.304,0,-29.0964	0/1:50:26,24:26:929:24:860:-60.4751,0,-68.8769	0/1:104:35,69:35:1231:69:2438:-181.869,0,-79.7838	1/1:131:0,129:0:0:129:4602:-402.234,-38.8329,0	0/1:92:44,48:44:1567:48:1724:-123.23,0,-113.626	0/1:53:27,26:27:950:26:932:-66.5135,0,-69.8583	0/1:9:1,8:1:36:8:288:-22.9941,0,-0.889005	1/1:98:0,97:0:0:97:3476:-305.159,-29.1999,0	0/1:100:23,77:23:812:77:2768:-212.282,0,-43.298	1/1:145:0,145:0:0:145:5196:-454.017,-43.6494,0	1/1:59:1,58:1:36:58:2084:-178.014,-14.1625,0	1/1:46:0,46:0:0:46:1656:-144.837,-13.8474,0	1/1:29:0,29:0:0:29:1044:-91.8038,-8.72987,0	1/1:88:1,87:1:36:87:3124:-267.614,-22.8924,0	1/1:19:0,19:0:0:19:684:-60.5862,-5.71957,0	1/1:39:0,39:0:0:39:1385:-122.45,-11.7402,0	1/1:43:0,43:0:0:43:1548:-136.035,-12.9443,0	1/1:24:0,24:0:0:24:864:-74.7538,-7.22472,0	0/1:49:21,27:21:756:27:968:-70.225,0,-53.558	0/1:55:32,23:32:1117:23:828:-56.316,0,-84.2793	1/1:148:0,148:0:0:148:5285:-460.99,-44.5524,0	1/1:90:0,89:0:0:89:3173:-276.126,-26.7917,0
chr12	20202001	.	AGAA	CGAA,AGAC	132903	PASS	AB=0.361083,0.229635;ABP=3798.43,7797.22;AC=69,27;AF=0.367021,0.143617;AN=188;AO=8186,2819;CIGAR=1X3M,3M1X;DP=22653;DPB=22653;DPRA=0,27.28;EPP=17778.7,6124.39;EPPR=25200.8;GTI=6;LEN=1,1;MEANALT=1.90426,2.48889;MQM=47.1258,54.0823;MQMR=59.9881;NS=94;NUMALT=2;ODDS=0.144328;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=291803,101001;QR=410888;RO=11604;RPL=0,0;RPP=17778.7,6124.39;RPPR=25200.8;RPR=8186,2819;RUN=1,1;SAF=8186,2819;SAP=17778.7,6124.39;SAR=0,0;SRF=11604;SRP=25200.8;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	0/2:118:54,22,42:54:1904:22,42:788,1508:-106.419,-59.7929,-208.194,0,-92.1447,-142.385	0/2:303:167,65,70:167:5854:65,70:2300,2512:-153.835,-20.7278,-477.519,0,-292.983,-455.294	0/2:233:101,52,79:101:3581:52,79:1860,2828:-197.644,-78.8786,-354.967,0,-142.575,-267.962	0/1:553:261,291,1:261:9242:291,1:10358,36:-756.889,0,-665.234,-832.522,-749.899,-1585.06	0/1:169:72,54,43:72:2518:54,43:1930,1544:-133.482,0,-188.587,-29.5036,-79.1894,-221.406	0/2:196:106,46,44:106:3783:46,44:1613,1580:-96.6209,-0.354957,-294.91,0,-180.234,-295.167	0/1:445:218,227,0:218:7678:227,0:8081,0:-586.815,0,-557.109,-652.439,-625.443,-1277.53	0/2:354:193,81,79:193:6808:81,79:2868,2836:-172.044,-1.67412,-531.638,0,-325.882,-530.573	0/1:309:161,148,0:161:5719:148,0:5280,0:-374.274,0,-421.813,-422.74,-466.366,-888.753	0/1:277:140,135,0:140:4920:135,0:4810,0:-346.418,0,-359.821,-388.562,-400.46,-789.025	0/1:72:37,35,0:37:1295:35,0:1256,0:-90.3749,0,-95.1731,-101.513,-105.709,-206.87	0/1:179:92,87,0:92:3265:87,0:3099,0:-221.525,0,-240.158,-249.219,-266.347,-515.214	0/1:212:109,103,0:109:3828:103,0:3676,0:-262.204,0,-280.901,-295.017,-311.907,-606.572	0/1:117:50,63,0:50:1768:63,0:2258,0:-166.571,0,-125.027,-181.623,-143.992,-325.62	0/1:202:116,86,0:116:4147:86,0:3072,0:-213.455,0,-312.605,-248.374,-338.493,-586.512	0/1:144:85,59,0:85:2991:59,0:2086,0:-141.779,0,-226.075,-167.367,-243.835,-410.853	0/1:142:74,68,0:74:2617:68,0:2422,0:-171.226,0,-193.033,-193.502,-213.503,-406.654	0/1:168:98,69,0:98:3482:69,0:2443,0:-165.238,0,-262.96,-194.739,-283.731,-478.479	0/1:84:37,47,0:37:1323:47,0:1682,0:-123.259,0,-94.0862,-134.397,-108.235,-242.277	0/1:578:276,169,131:276:9818:169,131:6048,4681:-405.135,0,-749.26,-109.269,-421.184,-869.968	0/2:429:208,98,123:208:7338:98,123:3482,4396:-293.96,-77.1979,-645.192,0,-318.12,-560.471	0/2:219:92,45,82:92:3260:45,82:1607,2944:-211.349,-109.167,-361.191,0,-135.694,-240.888	0/1:204:131,71,1:131:4654:71,1:2528,36:-164.586,0,-357.857,-201.086,-376.295,-580.021	0/1:353:207,137,9:207:7293:137,9:4862,320:-328.849,0,-552.523,-365.124,-567.727,-956.183	0/1:226:104,122,0:104:3659:122,0:4354,0:-320.1,0,-261.484,-351.407,-298.21,-649.265	0/1:955:451,268,233:451:16022:268,233:9631,8361:-644.306,0,-1224.88,-100.918,-626.406,-1336.34	0/1:681:368,312,0:368:13030:312,0:11044,0:-775.249,0,-967.47,-886.028,-1061.39,-1947.43	0/1:98:54,44,0:54:1927:44,0:1584,0:-111.939,0,-144.206,-128.195,-157.451,-285.289	0/1:573:272,155,146:272:9671:155,146:5542,5229:-367.498,0,-741.454,-24.1241,-362.86,-768.288	0/1:280:154,77,47:154:5453:77,47:2740,1684:-173.894,0,-420.992,-83.5426,-307.462,-513.569	0/1:320:148,172,0:148:5219:172,0:6082,0:-446.536,0,-373.524,-491.089,-425.301,-916.038	0/1:7:3,3,1:3:108:3,1:108,36:-7.82421,0,-7.91152,-5.8182,-5.9063,-14.331	0/2:12:7,1,4:7:239:1,4:36,144:-9.6262,-8.82484,-27.9071,0,-16.4703,-18.1772	1/1:10:0,10,0:0:0:10,0:360,0:-32.2915,-3.0103,0,-32.2915,-3.0103,-32.2915	0/1:10:7,2,1:7:235:2,1:72,36:-3.67534,0,-18.4126,-2.85192,-16.0825,-21.571	1/2:6:0,1,5:0:0:1,5:36,180:-17.8973,-15.0053,-14.7043,-3.24749,0,-1.74234	0/1:542:278,144,117:278:9888:144,117:5160,4171:-333.841,0,-762.478,-78.0166,-466.316,-848.623	0/1:333:178,79,75:178:6281:79,75:2832,2696:-175.05,0,-487.672,-9.60386,-292.424,-498.482	0/1:132:69,63,0:69:2444:63,0:2252,0:-159.75,0,-180.478,-180.521,-199.443,-379.611	0/1:4:2,2,0:2:61:2,0:72,0:-5.57282,0,-4.58941,-6.17488,-5.19147,-11.0356	0/1:284:157,127,0:157:5597:127,0:4534,0:-317.92,0,-418.362,-365.182,-456.592,-821.42	0/1:70:38,32,0:38:1357:32,0:1144,0:-81.1322,0,-101.357,-92.5714,-110.99,-203.206	0/1:314:159,155,0:159:5589:155,0:5530,0:-398.229,0,-408.62,-446.093,-455.28,-901.021	0/1:210:114,95,0:114:4048:95,0:3400,0:-240.58,0,-301.235,-274.897,-329.833,-604.735	0/2:190:105,40,45:105:3718:40,45:1423,1619:-100.021,-17.0312,-307.803,0,-188.217,-289.271	0/2:362:206,68,88:206:7306:68,88:2422,3156:-193.782,-60.3369,-635.098,0,-399.775,-568.743	0/1:328:151,177,0:151:5361:177,0:6291,0:-457.576,0,-383.889,-503.032,-437.171,-939.851	0/1:286:164,121,0:164:5774:121,0:4310,0:-298.236,0,-433.747,-347.605,-470.172,-817.665	0/1:292:145,147,0:145:5119:147,0:5260,0:-382.481,0,-372.956,-426.13,-417.208,-842.984	0/1:330:157,171,0:157:5557:171,0:6089,0:-443.991,0,-401.164,-491.252,-452.64,-943.898	0/2:577:288,115,173:288:10225:115,173:4070,6206:-418.487,-175.393,-973.909,0,-503.346,-781.06	0/1:7:3,4,0:3:108:4,0:144,0:-11.1342,0,-7.96796,-12.0373,-9.17208,-20.8504	0/1:196:53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chr12	20202026	.	GAC	GAA,AGA,AAA	406675	PASS	AB=0.503316,0.367453,0.225832;ABP=5.17025,3455.72,8283.12;AC=92,69,27;AF=0.489362,0.367021,0.143617;AN=188;AO=11385,8324,2864;CIGAR=2M1X,3X,1X1M1X;DP=22636;DPB=22636;DPRA=24.587,0,26.983;EPP=23668.4,17526.7,5947.26;EPPR=11.6962;GTI=6;LEN=1,3,3;MEANALT=3.04348,3.01064,3.55319;MQM=59.9924,47.0758,53.9885;MQMR=60;NS=94;NUMALT=3;ODDS=2.15919;PAIRED=0,0,0;PAIREDR=0;PAO=0,0,0;PQA=0,0,0;PQR=0;PRO=0;QA=406370,294671,102101;QR=138;RO=4;RPL=123,64,32;RPP=23668.4,17526.7,5947.26;RPPR=11.6962;RPR=11262,8260,2832;RUN=1,1,1;SAF=11385,8324,2864;SAP=24725.2,18078.3,6222.11;SAR=0,0,0;SRF=4;SRP=11.6962;SRR=0;TYPE=snp,mnp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/3:121:0,53,23,45:0:0:53,23,45:1904,798,1595:-284.941,-129.613,-113.658,-221.559,-66.232,-214.635,-155.338,0,-91.9579,-141.791	1/3:300:0,163,63,73:0:0:163,63,73:5828,2251,2610:-686.279,-211.068,-162,-507.678,-32.4668,-488.713,-475.216,0,-296.615,-453.24	1/3:232:0,101,52,79:0:0:101,52,79:3601,1852,2826:-521.497,-227.96,-197.556,-372.95,-79.413,-357.296,-293.539,0,-144.993,-269.758	1/2:557:0,256,298,1:0:0:256,298,1:9135,10543,36:-1592.96,-848.257,-771.193,-744.742,0,-655.035,-1590.03,-845.322,-741.806,-1589.73	1/2:167:0,67,54,44:0:0:67,54,44:2400,1927,1576:-350.591,-154.86,-134.691,-195.73,0,-179.475,-222.361,-26.6279,-67.5006,-209.115	1/3:196:0,105,46,45:0:0:105,46,45:3729,1617,1614:-435.132,-131.28,-99.6716,-308.327,-4.47974,-294.479,-303.859,0,-177.055,-290.313	1/2:443:0,215,228,0:0:0:215,228,0:7653,8063,0:-1273.55,-649.816,-585.095,-624.087,0,-555.452,-1273.55,-649.816,-624.087,-1273.55	1/3:351:0,189,81,80:0:0:189,81,80:6750,2875,2858:-782.221,-231.896,-175.001,-553.938,-3.61518,-529.555,-550.329,0,-322.047,-526.247	1/2:306:0,156,149,0:0:0:156,149,0:5570,5261,0:-873.544,-419.431,-372.471,-454.11,0,-409.256,-873.544,-419.431,-454.11,-873.544	1/2:274:0,134,139,0:0:0:134,139,0:4787,4874,0:-783.6,-393.306,-352.968,-390.309,0,-348.465,-783.6,-393.306,-390.309,-783.6	1/2:71:0,35,36,0:0:0:35,36,0:1260,1288,0:-206.76,-103.948,-93.4115,-103.169,0,-92.3324,-206.76,-103.948,-103.169,-206.76	1/2:180:0,90,90,0:0:0:90,90,0:3230,3179,0:-518.444,-254.998,-227.906,-263.799,0,-236.706,-518.444,-254.998,-263.799,-518.444	1/2:210:0,105,105,0:0:0:105,105,0:3768,3712,0:-604.361,-297.004,-265.396,-307.71,0,-276.102,-604.361,-297.004,-307.71,-604.361	1/2:116:0,50,66,0:0:0:50,66,0:1784,2336,0:-333.436,-188,-172.948,-145.79,0,-125.922,-333.436,-188,-145.79,-333.436	1/2:202:0,115,86,0:0:0:115,86,0:4115,3068,0:-582.435,-246.873,-212.255,-335.577,0,-309.688,-582.435,-246.873,-335.577,-582.435	1/2:142:0,82,59,0:0:0:82,59,0:2948,2068,0:-405.427,-164.909,-140.225,-240.509,0,-222.748,-405.427,-164.909,-240.509,-405.427	1/2:142:0,72,70,0:0:0:72,70,0:2572,2486,0:-407.753,-198.049,-176.375,-210.056,0,-188.984,-407.753,-198.049,-210.056,-407.753	1/2:170:0,98,72,0:0:0:98,72,0:3496,2543,0:-487.667,-202.668,-173.167,-285.35,0,-263.676,-487.667,-202.668,-285.35,-487.667	1/2:84:0,37,47,0:0:0:37,47,0:1316,1678,0:-241.036,-133.785,-122.647,-107.604,0,-93.4553,-241.036,-133.785,-107.604,-241.036	1/2:575:0,272,169,133:0:0:272,169,133:9736,5999,4732:-1275.79,-481.841,-399.961,-793.954,0,-743.08,-893.022,-99.0661,-411.182,-852.985	1/3:432:0,203,104,124:0:0:203,104,124:7233,3658,4447:-950.263,-360.707,-299.598,-657.926,-68.3723,-626.618,-589.56,0,-297.224,-552.233	1/3:218:0,90,46,82:0:0:90,46,82:3216,1631,2927:-499.637,-237.422,-210.329,-368.61,-106.396,-354.763,-262.218,0,-131.193,-237.533	1/2:202:0,130,70,1:0:0:130,70,1:4648,2447,36:-576.257,-197.258,-158.124,-378.991,0,-357.919,-573.322,-194.323,-376.056,-573.021	1/2:352:0,202,141,9:0:0:202,141,9:7162,5005,317:-984.936,-401.453,-340.645,-583.484,0,-541.038,-959.168,-375.684,-557.715,-956.458	1/2:230:0,104,125,0:0:0:104,125,0:3692,4385,0:-653.71,-352.886,-321.579,-300.895,0,-263.267,-653.71,-352.886,-300.895,-653.71	1/2:955:0,450,268,237:0:0:450,268,237:16006,9513,8451:-2074.63,-770.218,-634.754,-1304.41,0,-1223.74,-1388.15,-83.7391,-617.935,-1316.81	1/2:679:0,359,320,0:0:0:359,320,0:12810,11292,0:-1947.66,-903.361,-795.291,-1044.65,0,-948.323,-1947.66,-903.361,-1044.65,-1947.66	1/2:99:1,53,45,0:1:36:53,45,0:1896,1581,0:-278.73,-124.42,-111.403,-151.666,0,-141.057,-279.031,-127.357,-154.604,-281.968	1/2:569:0,265,154,146:0:0:265,154,146:9476,5473,5192:-1214.87,-442.2,-362.427,-772.672,0,-726.313,-792.83,-20.1569,-350.631,-748.88	1/2:280:0,153,80,47:0:0:153,80,47:5464,2831,1670:-672.682,-227.211,-181.153,-445.471,0,-421.388,-537.239,-91.7653,-310.027,-523.09	1/2:321:0,142,178,0:0:0:142,178,0:5084,6251,0:-918.159,-503.555,-460.808,-414.687,0,-361.104,-918.159,-503.555,-414.687,-918.159	1/2:6:0,2,3,1:0:0:2,3,1:72,106,36:-14.4308,-8.55336,-7.9513,-5.87693,0,-4.97384,-11.5213,-5.6427,-2.96888,-11.2203	1/3:12:0,7,1,4:0:0:7,1,4:248,36,144:-31.9335,-11.7334,-9.6262,-29.0244,-8.82484,-28.7234,-20.2006,0,-17.2912,-18.9965	2/2:10:0,0,10,0:0:0:0,10,0:0,360,0:-32.2915,-32.2915,-32.2915,-3.0103,-3.0103,0,-32.2915,-32.2915,-3.0103,-32.2915	1/2:11:0,8,2,1:0: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chr12	20202039	.	A	G	30925.6	PASS	AB=0.272818;ABP=4511.96;AC=40;AF=0.212766;AN=188;AO=2762;CIGAR=1X;DP=20865;DPB=20865;DPRA=1.3517;EPP=5991.93;EPPR=39256.7;GTI=7;LEN=1;MEANALT=1.04167;MQM=54.1137;MQMR=54.5784;NS=94;NUMALT=1;ODDS=4.38147;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98268;QR=637754;RO=18101;RPL=2761;RPP=5991.93;RPPR=39248.1;RPR=1;RUN=1;SAF=2762;SAP=6000.62;SAR=0;SRF=18100;SRP=39300.1;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:113:70,43:70:2469:43:1512:-102.035,0,-186.962	0/1:271:200,71:200:7017:71:2525:-144.565,0,-545.427	0/1:217:142,75:142:4981:75:2698:-175.605,0,-381.008	0/0:522:521,1:521:18397:1:36:0,-153.542,-1642.46	0/1:157:116,41:116:4065:41:1472:-85.2233,0,-316.617	0/1:178:134,44:134:4739:44:1580:-88.539,0,-369.571	0/0:402:402,0:402:14132:0:0:0,-121.014,-1264.01	0/1:320:242,77:242:8510:77:2753:-150.623,0,-664.299	0/0:289:288,1:288:10165:1:36:0,-83.9431,-903.891	0/0:253:253,0:253:8926:0:0:0,-76.1606,-799.78	0/0:66:66,0:66:2313:0:0:0,-19.868,-207.475	0/0:171:171,0:171:6075:0:0:0,-51.4761,-541.628	0/0:189:189,0:189:6624:0:0:0,-56.8947,-591.518	0/0:109:109,0:109:3868:0:0:0,-32.8123,-345.731	0/0:182:182,0:182:6425:0:0:0,-54.7875,-575.749	0/0:128:128,0:128:4526:0:0:0,-38.5318,-404.037	0/0:126:126,0:126:4350:0:0:0,-37.9298,-388.271	0/0:155:155,0:155:5468:0:0:0,-46.6596,-487.873	0/0:70:70,0:70:2465:0:0:0,-21.0721,-218.965	0/1:530:407,123:407:14317:123:4412:-235.997,0,-1122.58	0/1:407:290,117:290:10236:117:4160:-250.718,0,-791.828	0/1:201:121,79:121:4243:79:2832:-193.82,0,-319.549	0/0:188:187,1:187:6547:1:36:0,-52.998,-583.817	0/0:329:320,9:320:11304:9:324:0,-69.5784,-981.573	0/0:205:205,0:205:7199:0:0:0,-61.7111,-644.136	0/1:876:647,229:647:22632:229:8189:-471.395,0,-1768.51	0/0:613:613,0:613:21536:0:0:0,-184.531,-1922.63	0/0:95:95,0:95:3381:0:0:0,-28.5978,-303.235	0/1:535:393,142:393:13905:142:5026:-290.916,0,-1086.19	0/1:260:214,46:214:7500:46:1648:-69.7368,0,-593.705	0/0:296:296,0:296:10421:0:0:0,-89.1049,-931.099	0/1:6:5,1:5:176:1:36:-1.76063,0,-14.3091	0/1:9:5,4:5:180:4:144:-10.5855,0,-13.8428	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.0978	0/1:9:8,1:8:288:1:36:-0.879959,0,-23.4673	0/1:6:1,5:1:36:5:180:-14.7043,0,-1.74234	0/1:516:398,118:398:14133:118:4166:-219.195,0,-1111.97	0/1:303:228,75:228:8008:75:2679:-149.272,0,-627.346	0/0:121:121,0:121:4278:0:0:0,-36.4246,-381.879	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0164	0/0:261:260,1:260:9222:1:36:0,-75.002,-820.153	0/0:67:67,0:67:2365:0:0:0,-20.169,-211.742	0/0:290:289,1:289:10188:1:36:0,-83.7004,-907.467	0/0:195:195,0:195:6928:0:0:0,-58.7008,-621.033	0/1:179:138,41:138:4874:41:1434:-75.1351,0,-382.597	0/1:345:257,88:257:9112:88:3117:-175.681,0,-714.34	0/0:305:305,0:305:10742:0:0:0,-91.8141,-956.459	0/0:262:262,0:262:9233:0:0:0,-78.8699,-826.637	0/0:274:274,0:274:9644:0:0:0,-82.4822,-864.876	0/0:300:300,0:300:10624:0:0:0,-90.309,-951.108	0/1:538:368,170:368:13026:170:6028:-379.742,0,-1008.72	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.3533	0/0:181:181,0:181:6310:0:0:0,-54.4864,-561.209	0/0:214:214,0:214:7440:0:0:0,-64.4204,-668.174	0/1:22:13,9:13:460:9:311:-21.639,0,-35.0224	0/1:254:184,70:184:6522:70:2477:-146.19,0,-507.956	0/0:128:126,2:126:4451:2:72:0,-31.9819,-391.844	0/1:11:7,4:7:248:4:144:-9.90962,0,-19.3313	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.8673	0/0:151:151,0:151:5349:0:0:0,-45.4555,-478.761	0/1:238:181,57:181:6441:57:2023:-110.136,0,-506.199	0/0:5:5,0:5:172:0:0:0,-1.50515,-15.7676	0/0:354:354,0:354:12539:0:0:0,-106.565,-1124.26	0/1:422:292,130:292:10259:130:4615:-286.135,0,-794.883	0/0:144:142,2:142:4985:2:57:0,-37.94,-441.426	0/1:132:90,42:90:3208:42:1508:-95.6913,0,-247.911	0/1:389:284,105:284:9945:105:3702:-215.301,0,-775.137	0/1:257:171,86:171:5972:86:3062:-197.65,0,-459.447	0/0:48:48,0:48:1684:0:0:0,-14.4494,-150.506	0/1:264:188,76:188:6622:76:2719:-164.861,0,-514.161	0/1:193:134,59:134:4706:59:2095:-130.044,0,-364.555	0/0:34:34,0:34:1220:0:0:0,-10.235,-107.871	0/1:312:240,72:240:8492:72:2550:-134.429,0,-667.699	0/1:202:145,57:145:5116:57:2041:-122.495,0,-397.284	0/1:363:273,90:273:9533:90:3209:-178.864,0,-745.546	0/0:301:301,0:301:10657:0:0:0,-90.61,-954.611	0/1:207:137,70:137:4767:70:2508:-162.324,0,-364.844	0/1:216:157,59:157:5416:59:2098:-123.217,0,-419.588	0/1:17:9,8:9:301:8:288:-21.0839,0,-22.1149	0/0:223:223,0:223:7883:0:0:0,-67.1297,-704.813	0/1:276:212,64:212:7401:64:2277:-121.234,0,-578.78	0/0:644:644,0:644:22845:0:0:0,-193.863,-2044.96	0/0:229:229,0:229:8028:0:0:0,-68.9359,-719.448	0/0:151:151,0:151:5358:0:0:0,-45.4555,-479.466	0/0:210:210,0:210:7424:0:0:0,-63.2163,-665.762	0/0:347:347,0:347:12232:0:0:0,-104.457,-1092.35	0/0:80:80,0:80:2802:0:0:0,-24.0824,-251.089	0/0:146:146,0:146:5081:0:0:0,-43.9504,-453.909	0/0:136:136,0:136:4828:0:0:0,-40.9401,-430.779	0/0:49:49,0:49:1712:0:0:0,-14.7505,-152.877	0/1:145:106,39:106:3753:39:1353:-78.1385,0,-293.267	0/1:162:105,57:105:3690:57:2028:-133.795,0,-283.093	0/0:233:233,0:233:8270:0:0:0,-70.14,-739.181	0/0:300:300,0:300:10555:0:0:0,-90.309,-944.249
chr12	20202044	.	A	G	247459	PASS	AB=0.486504;ABP=43.6275;AC=96;AF=0.510638;AN=188;AO=12507;CIGAR=1X;DP=25691;DPB=25691;DPRA=0;EPP=27144.2;EPPR=28605.6;GTI=2;LEN=1;MEANALT=1.04255;MQM=50.4613;MQMR=59.9906;NS=94;NUMALT=1;ODDS=120.03;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=442363;QR=471378;RO=13180;RPL=10777;RPP=14213.5;RPPR=15826.1;RPR=1730;RUN=1;SAF=10779;SAP=14226.1;SAR=1728;SRF=11492;SRP=15839;SRR=1688;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:115:53,62:53:1896:62:2190:-161.244,0,-136.3	0/1:303:167,136:167:5972:136:4823:-337.143,0,-446.375	0/1:230:102,128:102:3660:128:4553:-336.031,0,-260.366	0/1:545:257,288:257:9216:288:10168:-742.905,0,-665.346	0/1:162:69,93:69:2463:93:3287:-245.304,0,-173.157	0/1:193:106,87:106:3804:87:3064:-213.34,0,-284.458	0/1:434:214,220:214:7643:220:7818:-565.965,0,-557.261	0/1:350:190,159:190:6791:159:5614:-393.187,0,-505.845	0/1:300:159,141:159:5661:141:4987:-349.923,0,-419.303	0/1:270:139,131:139:4970:131:4652:-334.316,0,-366.17	0/1:72:36,36:36:1288:36:1261:-90.9661,0,-94.5494	0/1:173:90,83:90:3231:83:2893:-204.432,0,-238.932	0/1:207:106,101:106:3792:101:3526:-250.547,0,-279.165	0/1:114:52,62:52:1868:62:2196:-160.918,0,-134.082	0/1:199:115,84:115:4124:84:2980:-206.056,0,-311.439	0/1:140:85,55:85:3024:55:1930:-129.032,0,-230.248	0/1:143:75,68:75:2669:68:2412:-169.417,0,-197.407	0/1:166:95,71:95:3395:71:2470:-168.525,0,-255.794	0/1:83:37,46:37:1307:46:1635:-118.931,0,-92.9452	0/1:567:274,293:274:9811:293:10352:-752.503,0,-712.25	0/1:419:202,217:202:7252:217:7620:-552.316,0,-526.581	0/1:290:122,168:122:4368:168:5936:-444.968,0,-305.994	0/1:197:129,68:129:4624:68:2403:-155.748,0,-357.02	0/1:347:205,142:205:7327:142:5040:-343.14,0,-555.023	0/1:220:103,117:103:3670:117:4134:-302.685,0,-264.277	0/1:1931:946,984:946:33871:984:34959:-2556.58,0,-2465.93	0/1:672:361,311:361:12868:311:10972:-769.953,0,-955.651	0/1:96:54,42:54:1924:42:1480:-103.34,0,-144.538	0/1:1053:519,534:519:18543:534:18943:-1383.53,0,-1351.47	0/1:275:153,122:153:5469:122:4293:-299.831,0,-409.554	0/1:311:141,170:141:5060:170:5969:-438.787,0,-361.921	0/1:7:3,4:3:108:4:144:-11.09,0,-7.96796	0/1:12:7,5:7:248:5:180:-12.892,0,-19.0518	1/1:10:0,10:0:0:10:360:-32.2915,-3.0103,0	0/1:11:8,3:8:288:3:108:-6.66251,0,-22.9561	1/1:6:0,6:0:0:6:216:-19.7034,-1.80618,0	0/1:936:483,453:483:17224:453:16061:-1158.66,0,-1267.98	0/1:329:178,151:178:6359:151:5354:-380.112,0,-473.363	0/1:130:68,62:68:2428:62:2147:-151.13,0,-179.642	0/1:3:1,2:1:36:2:72:-5.87385,0,-2.69518	0/1:280:156,124:156:5595:124:4325:-300.063,0,-419.382	0/1:69:38,31:38:1364:31:1108:-78.2225,0,-102.29	0/1:308:157,151:157:5615:151:5341:-383.616,0,-412.754	0/1:206:115,91:115:4105:91:3223:-226.556,0,-307.622	0/1:186:105,81:105:3752:81:2788:-193.746,0,-281.802	0/1:561:314,246:314:11228:246:8755:-616.809,0,-841.624	0/1:327:150,177:150:5353:177:6297:-457.458,0,-383.466	0/1:280:163,117:163:5851:117:4123:-284.035,0,-442.411	0/1:290:144,146:144:5172:146:5182:-376.318,0,-378.32	0/1:333:160,173:160:5720:173:6146:-447.255,0,-414.675	0/1:830:444,386:444:15880:386:13679:-978.302,0,-1179.04	0/1:7:3,4:3:108:4:144:-11.1342,0,-7.96796	0/1:191:51,140:51:1824:140:5003:-385.765,0,-106.944	0/1:383:211,172:211:7568:172:6130:-434.728,0,-565.863	0/1:24:14,10:14:504:10:352:-24.6686,0,-38.4734	0/1:267:126,141:126:4509:141:4952:-362.376,0,-325.601	0/1:144:75,69:75:2691:69:2435:-173.85,0,-199.085	0/1:44:19,25:19:676:25:888:-66.8818,0,-47.9227	0/1:72:30,42:30:1072:42:1484:-112.062,0,-75.1183	0/1:167:99,68:99:3529:68:2399:-162.74,0,-267.547	0/1:246:120,125:120:4260:125:4413:-321.028,0,-309.571	0/1:5:1,4:1:36:4:140:-11.378,0,-2.09312	0/1:871:430,441:430:15371:441:15669:-1144.85,0,-1120.91	0/1:455:252,203:252:9011:203:7229:-508.351,0,-674.001	0/1:156:91,65:91:3260:65:2319:-159.447,0,-246.66	0/1:136:53,83:53:1892:83:2920:-220.681,0,-129.618	0/1:407:211,196:211:7572:196:6936:-496.991,0,-558.997	0/1:285:151,134:151:5424:134:4764:-341.397,0,-402.494	0/1:51:28,23:28:1004:23:820:-57.4126,0,-75.3233	0/1:275:147,128:147:5260:128:4548:-323.868,0,-390.754	0/1:453:216,237:216:7728:237:8418:-619.452,0,-559.187	0/1:38:10,28:10:356:28:964:-74.5088,0,-20.9421	0/1:335:198,137:198:7080:137:4831:-329.961,0,-536.413	0/1:216:98,118:98:3507:118:4172:-307.043,0,-250.817	0/1:385:211,174:211:7552:174:6115:-430.65,0,-563.824	0/1:321:175,146:175:6300:146:5175:-364.933,0,-470.457	0/1:223:116,107:116:4167:107:3786:-270.944,0,-308.081	0/1:235:119,116:119:4264:116:4107:-295.291,0,-313.196	0/1:19:6,13:6:216:13:468:-36.0002,0,-14.0709	0/1:243:125,118:125:4484:118:4180:-298.824,0,-330.578	0/1:288:147,141:147:5271:141:4986:-355.723,0,-387.828	0/1:693:399,294:399:14269:294:10351:-712.264,0,-1075.35	0/1:261:135,126:135:4802:126:4403:-314.746,0,-352.993	0/1:162:72,90:72:2584:90:3188:-235.835,0,-184.042	0/1:227:119,108:119:4256:108:3811:-272.259,0,-314.885	0/1:365:167,198:167:5964:198:6921:-507.489,0,-426.993	0/1:98:57,41:57:2027:41:1443:-99.0427,0,-153.201	0/1:149:75,74:75:2669:74:2605:-186.686,0,-195.601	0/1:157:75,82:75:2672:82:2911:-210.293,0,-193.464	0/1:59:28,31:28:1004:31:1082:-77.7804,0,-72.9151	0/1:151:87,64:87:3104:64:2263:-157.117,0,-234.133	0/1:175:90,85:90:3211:85:3020:-218.55,0,-236.533	0/1:236:123,113:123:4403:113:3979:-282.631,0,-325.399	0/1:325:170,155:170:6030:155:5470:-388.735,0,-444.975
chr12	20202083	.	GT	AT,AC	558217	PASS	AB=0.736154,0.262721;ABP=5600.76,5654.22;AC=147,41;AF=0.781915,0.218085;AN=188;AO=22452,3052;CIGAR=1X1M,2X;DP=25531;DPB=25531;DPRA=0,1.1932;EPP=47926.6,6595.65;EPPR=26.8965;GTI=9;LEN=1,2;MEANALT=1.69149,2.22449;MQM=59.9859,59.9371;MQMR=60;NS=94;NUMALT=2;ODDS=19.1369;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=804176,107695;QR=381;RO=11;RPL=22358,3048;RPP=47943.9,6595.65;RPPR=26.8965;RPR=94,4;RUN=1,1;SAF=2,0;SAP=48739.5,6630.34;SAR=22450,3052;SRF=0;SRP=26.8965;SRR=11;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:63:0,39,24:0:0:39,24:1381,836:-180.825,-68.3288,-56.5886,-112.847,0,-105.622	1/2:430:0,336,94:0:0:336,94:12057,3339:-1255.67,-272.194,-171.048,-983.828,0,-955.531	1/2:341:0,236,104:0:0:236,104:8462,3692:-990.853,-300.943,-229.9,-690.035,0,-658.728	1/1:744:0,743,0:0:0:743,0:26613,0:-2394.15,-223.665,0,-2394.15,-223.665,-2394.15	1/2:232:0,190,41:0:0:190,41:6798,1457:-673.06,-118.723,-61.5276,-554.333,0,-541.991	1/2:167:0,123,43:0:0:123,43:4378,1533:-481.764,-124.958,-87.9309,-356.803,0,-343.858	1/1:283:0,283,0:0:0:283,0:10116,0:-910.369,-85.1915,0,-910.369,-85.1915,-910.369	1/2:443:0,318,125:0:0:318,125:11353,4381:-1282.18,-356.607,-260.88,-925.923,0,-888.294	1/1:227:0,227,0:0:0:227,0:8090,0:-728.109,-68.3338,0,-728.109,-68.3338,-728.109	1/1:328:0,328,0:0:0:328,0:11760,0:-1058.26,-98.7378,0,-1058.26,-98.7378,-1058.26	1/1:241:0,240,0:0:0:240,0:8607,0:-774.303,-72.2472,0,-774.303,-72.2472,-774.303	1/1:175:0,174,1:0:0:174,1:6239,36:-561.244,-52.3792,0,-558.306,-49.082,-558.005	1/1:209:1,208,0:1:36:208,0:7441,0:-666.133,-59.317,0,-666.434,-62.6142,-669.372	1/1:264:0,264,0:0:0:264,0:9488,0:-853.873,-79.4719,0,-853.873,-79.4719,-853.873	1/1:172:0,172,0:0:0:172,0:6180,0:-556.295,-51.7772,0,-556.295,-51.7772,-556.295	1/1:185:0,185,0:0:0:185,0:6618,0:-595.691,-55.6906,0,-595.691,-55.6906,-595.691	1/1:251:0,251,0:0:0:251,0:8979,0:-808.088,-75.5585,0,-808.088,-75.5585,-808.088	1/1:201:0,201,0:0:0:201,0:7215,0:-649.401,-60.507,0,-649.401,-60.507,-649.401	1/1:143:0,143,0:0:0:143,0:5136,0:-462.38,-43.0473,0,-462.38,-43.0473,-462.38	1/2:243:0,172,71:0:0:172,71:6168,2523:-709.03,-205.948,-154.171,-503.438,0,-482.065	1/2:375:0,278,97:0:0:278,97:9923,3425:-1087.86,-278.893,-195.207,-809.324,0,-780.124	1/2:77:0,62,15:0:0:62,15:2228,528:-225.102,-43.3358,-24.6719,-182.12,0,-177.605	1/1:298:0,298,0:0:0:298,0:10657,0:-958.93,-89.7069,0,-958.93,-89.7069,-958.93	1/1:402:0,400,2:0:0:400,2:14325,72:-1288.64,-120.412,0,-1282.76,-114.177,-1282.16	1/1:132:0,132,0:0:0:132,0:4720,0:-424.96,-39.736,0,-424.96,-39.736,-424.96	1/2:1037:0,749,288:0:0:749,288:26876,10130:-3017.11,-824.886,-599.415,-2192.57,0,-2105.88	1/1:491:0,490,1:0:0:490,1:17560,36:-1579.65,-147.505,0,-1576.71,-144.207,-1576.41	1/1:89:0,89,0:0:0:89,0:3185,0:-286.872,-26.7917,0,-286.872,-26.7917,-286.872	1/2:515:0,374,140:0:0:374,140:13352,4924:-1489.49,-400.957,-288.372,-1088.68,0,-1046.53	1/2:403:0,313,90:0:0:313,90:11192,3193:-1172.98,-260.5,-166.278,-912.833,0,-885.74	1/1:421:0,420,1:0:0:420,1:15015,34:-1350.72,-126.433,0,-1347.96,-123.335,-1347.66	1/2:24:0,21,3:0:0:21,3:756,95:-69.6844,-7.96082,-1.63919,-62.0456,0,-61.1425	1/2:40:0,29,11:0:0:29,11:1040,370:-115.153,-30.3113,-21.5814,-85.1845,0,-81.8732	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/2:14:0,10,4:0:0:10,4:360,144:-41.4837,-12.1095,-9.0992,-29.734,0,-28.5299	1/2:29:0,25,4:0:0:25,4:900,144:-85.5449,-12.1095,-4.58375,-73.7953,0,-72.5911	1/2:431:0,304,127:0:0:304,127:10912,4470:-1254.34,-364.234,-272.721,-890.461,0,-852.23	1/2:469:0,335,134:0:0:335,134:11995,4735:-1364.17,-385.971,-285.126,-978.556,0,-938.218	1/1:261:0,261,0:0:0:261,0:9342,0:-840.669,-78.5688,0,-840.669,-78.5688,-840.669	1/2:4:0,2,2:0:0:2,2:72,61:-11.0935,-5.19117,-4.58911,-6.23466,0,-5.6326	1/1:445:0,445,0:0:0:445,0:15906,0:-1431.23,-133.958,0,-1431.23,-133.958,-1431.23	1/1:114:0,114,0:0:0:114,0:4100,0:-369.183,-34.3174,0,-369.183,-34.3174,-369.183	1/1:306:0,306,0:0:0:306,0:10953,0:-985.661,-92.1152,0,-985.661,-92.1152,-985.661	1/1:193:0,193,0:0:0:193,0:6909,0:-621.875,-58.0988,0,-621.875,-58.0988,-621.875	1/2:128:0,98,30:0:0:98,30:3503,1047:-371.135,-85.507,-56.0061,-285.979,0,-276.948	1/2:212:0,144,68:0:0:144,68:5139,2397:-614.43,-195.51,-152.162,-419.274,0,-398.804	1/1:323:0,320,3:0:0:320,3:11455,108:-1030.46,-96.3296,0,-1021.65,-87.1575,-1020.75	1/1:517:1,515,0:1:25:515,0:18407,0:-1653.73,-153.062,0,-1654.03,-155.03,-1655.98	1/1:191:1,190,0:1:36:190,0:6812,0:-609.552,-53.8985,0,-609.853,-57.1957,-612.79	1/1:514:2,512,0:2:70:512,0:18330,0:-1642.63,-148.082,0,-1643.24,-154.127,-1648.93	1/2:278:0,190,88:0:0:190,88:6828,3089:-808.785,-251.747,-194.552,-557.391,0,-530.901	1/1:43:0,43,0:0:0:43,0:1544,0:-139.253,-12.9443,0,-139.253,-12.9443,-139.253	1/1:445:0,444,0:0:0:444,0:15909,0:-1431.13,-133.657,0,-1431.13,-133.657,-1431.13	1/1:153:0,153,0:0:0:153,0:5500,0:-495.124,-46.0576,0,-495.124,-46.0576,-495.124	1/2:31:0,25,6:0:0:25,6:900,216:-91.4198,-17.9843,-10.4586,-73.7953,0,-71.9891	1/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chr12	20202121	.	C	T	69175	PASS	AB=0.312462;ABP=1008.06;AC=143;AF=0.768817;AN=186;AO=3494;CIGAR=1X;DP=5861;DPB=5861;DPRA=10.6069;EPP=7581.45;EPPR=5138.54;GTI=13;LEN=1;MEANALT=1.02174;MQM=59.9287;MQMR=59.9738;NS=93;NUMALT=1;ODDS=0.59621;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125062;QR=84655;RO=2365;RPL=0;RPP=7590.13;RPPR=5138.54;RPR=3494;RUN=1;SAF=3493;SAP=7581.45;SAR=1;SRF=2365;SRP=5138.54;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:31,10:31:1108:10:356:-20.039,0,-87.6888	0/1:67:39,28:39:1396:28:1000:-70.1464,0,-105.77	0/1:102:60,42:60:2152:42:1499:-104.499,0,-163.242	1/1:99:5,94:5:180:94:3358:-285.883,-13.2499,0	0/1:20:17,3:17:608:3:108:-4.05457,0,-49.0314	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3501	1/1:46:0,46:0:0:46:1655:-149.235,-13.8474,0	0/1:80:50,30:50:1796:30:1080:-73.4309,0,-137.84	1/1:45:0,45:0:0:45:1620:-145.82,-13.5464,0	1/1:44:0,44:0:0:44:1572:-141.768,-13.2453,0	1/1:48:0,48:0:0:48:1711:-154.275,-14.4494,0	1/1:55:0,55:0:0:55:1967:-177.298,-16.5567,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	1/1:56:0,56:0:0:56:2016:-181.711,-16.8577,0	1/1:51:1,50:1:36:50:1792:-157.964,-11.7543,0	1/1:35:0,35:0:0:35:1260:-113.699,-10.5361,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:35:2,33:2:72:33:1188:-100.392,-3.69933,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:138:115,23:115:4112:23:824:-32.9412,0,-328.723	0/1:150:113,37:113:4037:37:1317:-73.6666,0,-318.362	0/0:81:75,6:75:2688:6:212:0,-4.95863,-222.74	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:49:12,37:12:428:37:1324:-104.712,0,-24.1083	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:200:129,71:129:4616:71:2544:-169.005,0,-355.342	1/1:129:0,129:0:0:129:4632:-417.036,-38.8329,0	1/1:14:1,13:1:36:13:464:-38.4992,-0.616145,0	0/1:185:134,51:134:4788:51:1832:-109.47,0,-375.387	0/1:119:74,45:74:2656:45:1608:-109.029,0,-203.463	1/1:70:0,70:0:0:70:2520:-227.051,-21.0721,0	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:24:19,5:19:684:5:180:-9.32734,0,-54.6656	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:196:131,65:131:4700:65:2340:-151.857,0,-364.156	0/1:123:99,24:99:3528:24:860:-40.6951,0,-280.695	1/1:29:0,29:0:0:29:1041:-94.0045,-8.72987,0	.:.:.:.:.:.:.:.	1/1:68:0,68:0:0:68:2432:-219.118,-20.47,0	1/1:25:1,24:1:36:24:864:-74.4843,-3.92748,0	1/1:53:0,53:0:0:53:1877:-169.207,-15.9546,0	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:47:35,12:35:1256:12:428:-24.7104,0,-99.1969	0/1:71:56,15:56:2008:15:540:-27.5634,0,-159.62	1/1:35:1,34:1:36:34:1216:-106.148,-6.93778,0	1/1:90:1,89:1:36:89:3180:-282.509,-23.4944,0	1/1:81:0,81:0:0:81:2900:-261.228,-24.3834,0	1/1:49:0,49:0:0:49:1756:-158.323,-14.7505,0	0/1:117:86,31:86:3092:31:1112:-65.1708,0,-243.286	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:54:0,54:0:0:54:1930:-173.977,-16.2556,0	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:81:52,29:52:1856:29:1044:-69.8914,0,-142.936	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:62:0,62:0:0:62:2187:-197.091,-18.6639,0	0/1:135:97,38:97:3476:38:1346:-80.7995,0,-272.41	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:135:4,131:4:144:131:4665:-406.699,-27.3254,0	0/1:114:75,39:75:2692:39:1396:-91.6217,0,-208.207	1/1:53:1,52:1:36:52:1868:-164.801,-12.3563,0	0/1:24:15,9:15:536:9:320:-21.9176,0,-41.3501	0/1:108:80,28:80:2872:28:993:-56.0654,0,-226.205	0/1:146:108,37:108:3857:37:1332:-76.1732,0,-303.298	1/1:20:0,20:0:0:20:716:-64.7652,-6.0206,0	0/1:73:44,29:44:1576:29:1040:-71.9392,0,-120.155	0/1:62:36,25:36:1292:25:888:-61.5122,0,-97.8611	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:136:88,48:88:3148:48:1714:-113.606,0,-242.606	0/1:83:56,27:56:1996:27:968:-62.4519,0,-154.929	0/1:151:106,45:106:3780:45:1620:-100.634,0,-294.945	1/1:84:0,84:0:0:84:3020:-272.03,-25.2865,0	0/1:35:25,10:25:900:10:352:-21.4821,0,-70.785	0/1:96:55,41:55:1960:41:1460:-102.797,0,-147.771	0/1:22:19,3:19:680:3:104:-3.08015,0,-54.9065	1/1:28:0,28:0:0:28:996:-89.9549,-8.42884,0	0/1:55:31,24:31:1085:24:860:-61.1652,0,-81.4003	1/1:84:0,84:0:0:84:3001:-270.309,-25.2865,0	1/1:44:1,43:1:36:43:1539:-135.201,-9.64705,0	1/1:43:0,43:0:0:43:1548:-139.613,-12.9443,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:88:3,85:3:108:85:3021:-262.043,-16.4155,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:50:2,48:2:72:48:1728:-148.969,-8.21478,0	1/1:44:1,43:1:36:43:1544:-135.655,-9.64705,0	1/1:40:0,40:0:0:40:1428:-128.818,-12.0412,0	0/1:118:80,38:80:2876:38:1360:-87.1791,0,-223.555	0/1:65:55,10:55:1976:10:360:-13.1774,0,-158.548	1/1:94:0,94:0:0:94:3357:-302.346,-28.2968,0	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0
chr12	20202133	.	G	A	20373.2	PASS	AB=0.403623;ABP=274.655;AC=41;AF=0.22043;AN=186;AO=1361;CIGAR=1X;DP=5806;DPB=5806;DPRA=1.72109;EPP=2949.7;EPPR=9605.31;GTI=3;LEN=1;MEANALT=1.06977;MQM=59.9544;MQMR=59.9471;NS=93;NUMALT=1;ODDS=0.459401;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48063;QR=158646;RO=4442;RPL=1;RPP=2949.7;RPPR=9613.98;RPR=1360;RUN=1;SAF=1361;SAP=2958.38;SAR=0;SRF=4441;SRP=9640.01;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:17,24:17:600:24:829:-62.582,0,-41.987	0/1:67:35,32:35:1248:32:1140:-82.7402,0,-92.4559	0/1:100:63,37:63:2244:37:1309:-88.0073,0,-172.121	0/0:98:98,0:98:3477:0:0:0,-29.5009,-313.139	0/1:20:9,11:9:324:11:377:-28.2373,0,-23.4853	0/1:24:14,10:14:504:10:352:-24.7935,0,-38.4734	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/1:80:51,29:51:1828:29:1024:-68.3902,0,-140.719	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.222	0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.818	0/0:48:47,1:47:1676:1:36:0,-10.8512,-147.529	0/0:52:52,0:52:1853:0:0:0,-15.6536,-167.003	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.272	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.339	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:15:15,0:15:531:0:0:0,-4.51545,-48.1219	0/1:140:57,83:57:2044:83:2958:-224.31,0,-142.088	0/1:154:98,55:98:3503:55:1952:-129.539,0,-268.957	0/1:82:34,48:34:1220:48:1693:-127.97,0,-85.4223	0/0:57:57,0:57:2017:0:0:0,-17.1587,-181.801	0/1:49:44,5:44:1557:5:168:-0.70046,0,-125.669	0/0:24:24,0:24:849:0:0:0,-7.22472,-76.7278	0/1:201:154,47:154:5499:47:1665:-89.5723,0,-434.531	0/0:126:126,0:126:4497:0:0:0,-37.9298,-404.893	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:184:101,83:101:3624:83:2916:-207.286,0,-270.975	0/1:118:72,46:72:2565:46:1632:-111.647,0,-195.26	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.212	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/1:24:8,16:8:284:16:572:-44.5887,0,-18.6786	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:199:134,65:134:4798:65:2321:-149.243,0,-372.069	0/1:122:49,72:49:1760:72:2518:-190.086,0,-121.899	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	.:.:.:.:.:.:.:.	0/0:66:66,0:66:2344:0:0:0,-19.868,-211.217	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:52:52,0:52:1864:0:0:0,-15.6536,-168.039	0/0:30:30,0:30:1065:0:0:0,-9.0309,-96.1598	0/1:48:30,18:30:1076:18:640:-43.4799,0,-82.7034	0/1:71:31,40:31:1088:40:1416:-106.364,0,-76.8533	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.509	0/0:79:79,0:79:2832:0:0:0,-23.7814,-255.11	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:118:62,56:62:2220:56:1992:-144.033,0,-164.543	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:54:54,0:54:1910:0:0:0,-16.2556,-172.174	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.416	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:79:59,20:59:2105:20:708:-40.2642,0,-165.936	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:9:8,1:8:284:1:36:-0.889005,0,-23.1941	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:60:60,0:60:2102:0:0:0,-18.0618,-189.447	0/1:129:70,59:70:2504:59:2096:-150.075,0,-186.78	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:132:132,0:132:4721:0:0:0,-39.736,-425.048	0/1:113:87,26:87:3098:26:916:-48.7401,0,-245.028	0/0:50:49,1:49:1741:1:36:0,-11.4532,-153.374	0/1:22:20,2:20:705:2:72:-0.214063,0,-57.1501	0/1:110:77,33:77:2741:33:1168:-72.3139,0,-212.714	0/1:147:68,79:68:2440:79:2784:-206.535,0,-175.604	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8841	0/1:74:46,28:46:1652:28:966:-64.9716,0,-126.692	0/1:61:38,23:38:1368:23:824:-56.1205,0,-105.047	0/0:17:17,0:17:585:0:0:0,-5.11751,-52.9719	0/1:135:76,59:76:2736:59:2070:-145.929,0,-205.843	0/1:80:62,18:62:2215:18:640:-33.8469,0,-175.532	0/1:146:74,72:74:2636:72:2502:-181.482,0,-193.537	0/0:82:82,0:82:2925:0:0:0,-24.6845,-263.484	0/1:34:19,15:19:684:15:532:-37.9781,0,-51.6553	0/1:97:70,27:70:2482:27:927:-54.5384,0,-194.431	0/1:23:15,8:15:536:8:280:-18.6156,0,-41.6511	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:54:45,9:45:1620:9:324:-13.2502,0,-129.834	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.709	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.53	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.785	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:116:58,57:58:2084:57:2032:-148.174,0,-152.852	0/1:65:31,34:31:1108:34:1212:-89.8194,0,-80.464	0/0:92:92,0:92:3273:0:0:0,-27.6948,-294.79	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801
chr12	20202145	.	A	G	16993.1	PASS	AB=0.289613;ABP=1313.26;AC=41;AF=0.22043;AN=186;AO=993;CIGAR=1X;DP=5912;DPB=5912;DPRA=1.79245;EPP=405.467;EPPR=4668.63;GTI=4;LEN=1;MEANALT=1.06383;MQM=59.996;MQMR=59.9363;NS=93;NUMALT=1;ODDS=1.41489;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35434;QR=175922;RO=4916;RPL=711;RPP=405.467;RPPR=4662.89;RPR=282;RUN=1;SAF=993;SAP=2159.28;SAR=0;SRF=4915;SRP=10669.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:42:34,8:34:1224:8:273:-12.2569,0,-97.8238	0/1:68:61,7:61:2196:7:252:-2.55892,0,-177.435	0/1:100:77,23:77:2768:23:828:-44.7411,0,-219.258	0/0:98:98,0:98:3509:0:0:0,-29.5009,-316.01	0/1:20:14,6:14:496:6:216:-13.7699,0,-38.9537	0/1:24:19,5:19:684:5:180:-9.32734,0,-54.6656	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.325	0/1:80:60,20:60:2156:20:697:-38.9683,0,-170.225	0/0:46:45,1:45:1620:1:36:0,-10.2491,-142.222	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.371	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:55:54,1:54:1944:1:36:0,-12.9584,-171.593	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.419	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.225	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:138:105,33:105:3723:33:1188:-65.6865,0,-293.727	0/1:154:93,61:93:3317:61:2176:-149.748,0,-252.283	0/1:81:53,28:53:1874:28:1008:-66.6529,0,-144.552	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.128	0/1:50:43,7:43:1518:7:237:-6.60756,0,-121.858	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:198:116,81:116:4168:81:2908:-202.292,0,-315.582	0/0:133:133,0:133:4738:0:0:0,-40.037,-426.572	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:184:135,49:135:4841:49:1764:-103.654,0,-380.452	0/1:119:93,26:93:3344:26:932:-48.3763,0,-265.036	0/0:71:71,0:71:2556:0:0:0,-21.3731,-230.29	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:24:21,3:21:756:3:108:-2.85045,0,-61.1425	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:2,4:2:72:4:129:-10.1215,0,-5.03054	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:201:131,70:131:4682:70:2490:-163.845,0,-361.03	0/1:125:99,26:99:3552:26:932:-46.5701,0,-282.249	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	.:.:.:.:.:.:.:.	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.608	0/0:25:25,0:25:885:0:0:0,-7.52575,-79.9665	0/0:54:54,0:54:1899:0:0:0,-16.2556,-171.182	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:48:31,17:31:1101:17:612:-40.964,0,-84.9489	0/1:71:55,16:55:1957:16:576:-30.8019,0,-155.031	0/0:34:33,1:33:1173:1:36:0,-6.63674,-102.277	0/0:88:88,0:88:3168:0:0:0,-26.4906,-285.026	0/0:80:80,0:80:2872:0:0:0,-24.0824,-258.708	0/0:51:51,0:51:1813:0:0:0,-15.3525,-163.45	0/1:122:91,31:91:3242:31:1112:-63.6657,0,-255.273	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:82:51,31:51:1828:31:1097:-74.3536,0,-140.116	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/1:133:94,39:94:3384:39:1391:-85.4489,0,-264.735	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:135:134,1:134:4763:1:36:0,-37.0408,-425.227	0/1:114:66,48:66:2357:48:1711:-119.958,0,-178.07	0/0:52:51,1:51:1832:1:36:0,-12.0553,-161.562	0/1:25:14,11:14:504:11:373:-26.3695,0,-38.1723	0/1:113:65,48:65:2313:48:1716:-120.709,0,-173.308	0/1:149:118,31:118:4244:31:1116:-55.8982,0,-337.266	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1226	0/1:74:57,17:57:2052:17:612:-33.1372,0,-162.672	0/1:61:49,12:49:1760:12:424:-20.133,0,-140.31	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:136:107,29:107:3818:29:1025:-51.6206,0,-302.874	0/1:84:46,38:46:1611:38:1349:-96.4218,0,-119.987	0/1:152:120,31:120:4316:31:1089:-52.5022,0,-342.798	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/1:35:25,10:25:900:10:360:-22.2083,0,-70.785	0/1:99:68,31:68:2414:31:1116:-70.9497,0,-187.698	0/1:23:11,12:11:377:12:428:-31.9351,0,-27.3342	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:55:33,22:33:1173:22:777:-53.6937,0,-89.3189	0/0:85:85,0:85:3056:0:0:0,-25.5875,-275.257	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.564	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.851	0/0:28:28,0:28:993:0:0:0,-8.42884,-89.6825	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.221	0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4168	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:120:96,23:96:3433:23:828:-38.6617,0,-272.999	0/1:64:44,20:44:1576:20:720:-45.8629,0,-122.866	0/0:94:93,1:93:3325:1:36:0,-24.6985,-295.868	0/0:53:53,0:53:1885:0:0:0,-15.9546,-169.927
chr12	20202151	.	T	C	20620.4	PASS	AB=0.403279;ABP=275.626;AC=41;AF=0.22043;AN=186;AO=1353;CIGAR=1X;DP=5811;DPB=5811;DPRA=1.73254;EPP=2941.01;EPPR=9674.75;GTI=1;LEN=1;MEANALT=1.07317;MQM=59.9667;MQMR=59.9677;NS=93;NUMALT=1;ODDS=0.640646;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48258;QR=159196;RO=4454;RPL=1353;RPP=2941.01;RPPR=9666.06;RPR=0;RUN=1;SAF=1353;SAP=2941.01;SAR=0;SRF=4453;SRP=9666.06;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:41:17,22:17:612:22:788:-59.1449,0,-43.3134	0/1:66:34,32:34:1220:32:1152:-84.1222,0,-90.2388	0/1:99:62,37:62:2205:37:1315:-88.8487,0,-168.912	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.169	0/1:20:9,11:9:324:11:392:-29.5995,0,-23.4853	0/1:24:14,10:14:504:10:360:-25.5196,0,-38.4734	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.727	0/1:78:48,29:48:1720:29:1040:-70.3753,0,-131.546	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.17	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.158	0/0:54:54,0:54:1915:0:0:0,-16.2556,-172.608	0/0:53:53,0:53:1900:0:0:0,-15.9546,-171.278	0/0:55:55,0:55:1980:0:0:0,-16.5566,-178.466	0/0:49:49,0:49:1751:0:0:0,-14.7505,-157.873	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.046	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:138:57,81:57:2044:81:2879:-217.804,0,-142.69	0/1:150:96,54:96:3444:54:1919:-127.832,0,-264.912	0/1:81:34,47:34:1220:47:1688:-127.824,0,-85.7234	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:48:43,5:43:1544:5:180:-2.10263,0,-124.804	0/0:23:23,0:23:813:0:0:0,-6.92369,-73.4891	0/1:199:154,45:154:5503:45:1612:-85.4651,0,-435.492	0/0:129:129,0:129:4556:0:0:0,-38.8329,-410.202	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:185:101,84:101:3608:84:3003:-214.811,0,-269.233	0/1:118:70,48:70:2485:48:1716:-119.204,0,-188.063	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:24:8,16:8:288:16:576:-44.9503,0,-19.0427	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:199:135,64:135:4847:64:2280:-145.554,0,-376.477	0/1:123:49,74:49:1752:74:2649:-201.619,0,-120.937	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	.:.:.:.:.:.:.:.	0/0:67:67,0:67:2395:0:0:0,-20.169,-215.789	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/1:48:30,18:30:1072:18:648:-44.2024,0,-82.343	0/1:69:32,37:32:1140:37:1315:-97.88,0,-82.1381	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/0:88:88,0:88:3152:0:0:0,-26.4906,-283.905	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.75	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:119:62,57:62:2211:57:2026:-146.789,0,-163.432	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:80:58,22:58:2075:22:783:-46.7105,0,-162.937	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:9:8,1:8:269:1:36:-0.889005,0,-21.8269	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:62:62,0:62:2214:0:0:0,-18.6639,-199.523	0/1:132:75,57:75:2677:57:2048:-144.853,0,-201.436	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:134:134,0:134:4770:0:0:0,-40.338,-429.456	0/1:109:83,26:83:2976:26:936:-51.7472,0,-235.26	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/1:25:21,4:21:739:4:144:-5.78787,0,-59.3066	0/1:107:74,33:74:2641:33:1175:-73.8467,0,-205.725	0/1:150:68,82:68:2444:82:2927:-218.492,0,-175.06	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:73:45,28:45:1612:28:993:-67.7072,0,-123.395	0/1:60:37,23:37:1324:23:824:-56.4215,0,-101.4	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/1:135:77,58:77:2751:58:2077:-146.561,0,-207.193	0/1:80:62,18:62:2228:18:644:-34.2082,0,-176.701	0/1:148:76,72:76:2711:72:2571:-187.086,0,-199.681	0/0:84:84,0:84:3005:0:0:0,-25.2865,-270.68	0/1:34:19,15:19:680:15:540:-38.7015,0,-51.2941	0/1:99:72,27:72:2548:27:949:-55.907,0,-199.768	0/1:22:14,8:14:500:8:271:-18.0968,0,-38.7135	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/1:54:46,8:46:1648:8:276:-8.91963,0,-132.353	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.986	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.155	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.961	0/0:28:28,0:28:999:0:0:0,-8.42884,-90.2245	0/0:88:88,0:88:3144:0:0:0,-26.4906,-283.181	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:50:50,0:50:1780:0:0:0,-15.0515,-160.483	0/0:43:43,0:43:1516:0:0:0,-12.9443,-136.73	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:116:58,57:58:2075:57:2019:-147.002,0,-152.042	0/1:64:31,33:31:1097:33:1147:-84.2664,0,-79.7721	0/0:93:93,0:93:3327:0:0:0,-27.9958,-299.647	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638
chr12	20202161	.	T	G	100309	PASS	AB=0.707715;ABP=1265.94;AC=145;AF=0.77957;AN=186;AO=4838;CIGAR=1X;DP=5849;DPB=5849;DPRA=0;EPP=10499.9;EPPR=2198.37;GTI=5;LEN=1;MEANALT=1;MQM=59.951;MQMR=60;NS=93;NUMALT=1;ODDS=0.82931;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172399;QR=36216;RO=1011;RPL=4838;RPP=10508.6;RPPR=2198.37;RPR=0;RUN=1;SAF=4837;SAP=10499.9;SAR=1;SRF=1011;SRP=2198.37;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:8,31:8:284:31:1086:-86.3049,0,-14.1632	0/1:66:7,59:7:248:59:2120:-171.201,0,-2.79621	0/1:98:22,76:22:788:76:2713:-214.911,0,-41.7439	1/1:97:5,92:5:180:92:3304:-281.018,-12.6478,0	0/1:18:6,12:6:216:12:432:-33.8027,0,-14.372	0/1:24:5,19:5:180:19:684:-54.6656,0,-9.32734	1/1:46:0,46:0:0:46:1648:-148.605,-13.8474,0	0/1:81:22,59:22:792:59:2086:-163.623,0,-47.2222	1/1:46:0,46:0:0:46:1610:-145.127,-13.8474,0	1/1:41:0,41:0:0:41:1472:-132.773,-12.3422,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:54:0,54:0:0:54:1931:-174.066,-16.2556,0	1/1:53:0,53:0:0:53:1877:-169.207,-15.9546,0	1/1:57:0,57:0:0:57:2031:-183.053,-17.1587,0	1/1:49:1,48:1:36:48:1713:-150.856,-11.1522,0	1/1:36:0,36:0:0:36:1292:-116.581,-10.8371,0	1/1:37:1,36:1:36:36:1288:-112.625,-7.53984,0	1/1:35:2,33:2:72:33:1164:-98.2302,-3.69933,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:137:33,104:33:1173:104:3735:-295.108,0,-64.6344	0/1:157:63,94:63:2247:94:3305:-250.298,0,-155.231	0/1:82:28,54:28:1004:54:1923:-148.662,0,-65.9914	1/1:58:0,58:0:0:58:2056:-185.309,-17.4597,0	0/1:48:7,41:7:252:41:1442:-115.623,0,-8.57952	1/1:24:0,24:0:0:24:825:-74.5616,-7.22472,0	0/1:202:82,120:82:2937:120:4278:-324.386,0,-203.754	1/1:128:0,128:0:0:128:4576:-412,-38.5318,0	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	0/1:184:50,134:50:1796:134:4790:-375.865,0,-106.533	0/1:116:27,89:27:968:89:3185:-251.952,0,-52.5179	1/1:71:0,71:0:0:71:2552:-229.922,-21.3731,0	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/1:24:3,21:3:108:21:756:-61.1425,0,-2.85045	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:200:70,130:70:2508:130:4579:-352.068,0,-165.766	0/1:120:27,93:27:968:93:3317:-262.622,0,-51.3138	1/1:29:0,29:0:0:29:1029:-92.9211,-8.72987,0	.:.:.:.:.:.:.:.	1/1:68:0,68:0:0:68:2391:-215.426,-20.47,0	1/1:25:1,24:1:36:24:851:-73.3112,-3.92748,0	1/1:52:0,52:0:0:52:1872:-168.759,-15.6536,0	1/1:29:0,29:0:0:29:1025:-92.5607,-8.72987,0	0/1:47:18,29:18:648:29:1036:-79.4055,0,-44.5035	0/1:70:15,55:15:536:55:1953:-154.972,0,-27.5027	1/1:35:1,34:1:36:34:1205:-105.156,-6.93778,0	1/1:89:1,88:1:36:88:3156:-280.666,-23.1934,0	1/1:81:0,81:0:0:81:2867:-258.265,-24.3834,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	0/1:117:29,88:29:1040:88:3125:-246.253,0,-58.6939	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:54:0,54:0:0:54:1908:-171.995,-16.2556,0	1/1:43:0,43:0:0:43:1501:-135.378,-12.9443,0	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:79:30,49:30:1072:49:1739:-133.011,0,-73.0111	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	0/1:132:37,95:37:1320:95:3400:-266.475,0,-79.366	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:137:5,132:5:176:132:4704:-407.335,-25.0561,0	0/1:113:47,66:47:1692:66:2341:-176.932,0,-118.55	1/1:53:1,52:1:36:52:1853:-163.45,-12.3563,0	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	0/1:113:48,65:48:1719:65:2315:-174.165,0,-120.978	0/1:147:31,116:31:1099:116:4141:-328.604,0,-54.968	1/1:20:0,20:0:0:20:712:-64.3999,-6.0206,0	0/1:73:16,57:16:576:57:2040:-161.893,0,-30.1998	0/1:60:13,47:13:468:47:1688:-134.141,0,-24.3978	1/1:19:0,19:0:0:19:669:-60.5339,-5.71957,0	0/1:137:29,108:29:1025:108:3853:-305.724,0,-51.3196	0/1:83:38,45:38:1368:45:1616:-120.745,0,-98.4353	0/1:147:29,118:29:1040:118:4201:-334.017,0,-49.663	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:35:10,25:10:360:25:900:-70.785,0,-22.2083	0/1:96:30,66:30:1080:66:2342:-182.124,0,-68.6144	0/1:23:12,11:12:432:11:392:-28.6964,0,-32.2975	1/1:28:0,28:0:0:28:999:-90.2251,-8.42884,0	0/1:55:22,33:22:788:33:1176:-89.5911,0,-54.6881	1/1:82:0,82:0:0:82:2929:-263.835,-24.6845,0	1/1:44:1,43:1:36:43:1544:-135.655,-9.64705,0	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:88:3,85:3:108:85:3032:-263.034,-16.4155,0	1/1:19:0,19:0:0:19:651:-58.9072,-5.71957,0	1/1:51:2,49:2:72:49:1752:-151.127,-8.51581,0	1/1:44:1,43:1:36:43:1518:-133.313,-9.64705,0	1/1:39:0,39:0:0:39:1383:-124.767,-11.7402,0	0/1:119:23,96:23:828:96:3421:-272.281,0,-39.0215	0/1:65:21,44:21:756:44:1582:-123.105,0,-48.8003	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0
chr12	20202295	.	G	C	11653	PASS	AB=0.296539;ABP=1156.14;AC=37;AF=0.201087;AN=184;AO=956;CIGAR=1X;DP=5826;DPB=5826;DPRA=1.79977;EPP=2078.94;EPPR=10554.2;GTI=6;LEN=1;MEANALT=1.07317;MQM=51.2406;MQMR=58.7016;NS=92;NUMALT=1;ODDS=2.69959;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=34113;QR=172762;RO=4863;RPL=0;RPP=2078.94;RPPR=10554.2;RPR=956;RUN=1;SAF=0;SAP=2078.94;SAR=956;SRF=0;SRP=10562.9;SRR=4863;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:13,2:13:460:2:72:-2.30408,0,-37.1893	0/1:84:59,25:59:2105:25:868:-52.949,0,-164.227	0/1:108:77,31:77:2690:31:1116:-67.5291,0,-209.535	0/0:186:185,0:185:6591:0:0:0,-55.6905,-592.923	0/1:19:14,5:14:496:5:180:-10.7909,0,-39.199	0/1:19:16,3:16:567:3:108:-4.33027,0,-45.6138	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.254	0/1:64:46,18:46:1644:18:648:-39.2385,0,-128.337	0/0:69:69,0:69:2450:0:0:0,-20.7711,-220.751	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.752	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:47:47,0:47:1648:0:0:0,-14.1484,-148.605	0/0:44:44,0:44:1543:0:0:0,-13.2453,-139.152	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:40:40,0:40:1411:0:0:0,-12.0412,-127.283	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:14:14,0:14:496:0:0:0,-4.21442,-44.9743	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3052	0/1:157:105,51:105:3747:51:1811:-114.764,0,-289.975	0/1:134:87,47:87:3104:47:1675:-109.956,0,-239.062	0/1:63:44,19:44:1559:19:684:-42.1097,0,-121.227	0/0:95:95,0:95:3404:0:0:0,-28.5978,-306.562	0/0:42:40,2:40:1419:2:72:0,-5.82373,-121.185	0/0:30:30,0:30:1064:0:0:0,-9.0309,-96.0698	0/1:248:201,47:201:7146:47:1688:-75.9907,0,-568.138	0/0:112:111,0:111:3937:0:0:0,-33.4143,-354.214	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.3989	0/1:276:198,78:198:7061:78:2808:-168,0,-552.02	0/1:129:97,32:97:3459:32:1140:-63.8107,0,-272.478	0/0:71:71,0:71:2523:0:0:0,-21.3731,-227.315	0/1:5:4,1:4:135:1:36:-2.08408,0,-10.959	0/1:6:5,1:5:180:1:36:-1.78305,0,-14.7271	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0648	0/1:156:104,52:104:3655:52:1838:-118.129,0,-281.822	0/1:94:64,30:64:2269:30:1076:-68.6158,0,-175.865	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:63:63,0:63:2239:0:0:0,-18.9649,-201.76	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:71:71,0:71:2505:0:0:0,-21.3731,-225.693	0/0:28:28,0:28:983:0:0:0,-8.42884,-88.7802	0/1:52:30,22:30:1046:22:783:-54.9665,0,-78.749	0/1:71:54,17:54:1921:17:608:-32.2463,0,-151.707	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.147	0/0:128:128,0:128:4560:0:0:0,-38.5318,-410.554	0/0:63:62,0:62:2181:0:0:0,-18.6639,-196.189	0/0:58:56,1:56:2004:1:32:0,-14.2603,-177.322	0/1:141:97,44:97:3440:44:1584:-99.8089,0,-267.265	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	0/0:59:59,0:59:2073:0:0:0,-17.7608,-186.833	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.0734	0/1:117:75,42:75:2659:42:1499:-99.1637,0,-204.185	0/0:16:15,0:15:540:0:0:0,-4.51545,-48.6493	0/1:8:7,1:7:252:1:32:-0.787441,0,-20.618	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0541	0/1:65:41,24:41:1451:24:855:-57.2943,0,-111.184	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83179	0/0:204:204,0:204:7240:0:0:0,-61.4101,-651.629	0/1:166:121,45:121:4300:45:1582:-91.6285,0,-336.655	0/0:39:38,1:38:1347:1:36:0,-8.15094,-117.938	0/1:88:63,25:63:2260:25:876:-52.4648,0,-177.057	0/1:125:81,44:81:2873:44:1584:-103.781,0,-221.008	0/1:152:109,43:109:3891:43:1529:-90.3676,0,-304.077	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:18:15,3:15:536:3:104:-4.26399,0,-42.8715	0/1:46:30,16:30:1068:16:568:-37.4831,0,-82.5036	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5384	0/1:61:42,19:42:1483:19:684:-43.3719,0,-115.315	0/1:77:46,31:46:1640:31:1116:-77.0901,0,-124.651	0/1:111:87,24:87:3120:24:864:-44.4719,0,-247.423	0/0:145:145,0:145:5151:0:0:0,-43.6493,-463.721	0/1:39:28,11:28:1008:11:392:-23.7943,0,-79.1215	0/1:94:50,44:50:1788:44:1572:-112.643,0,-132.825	0/1:11:8,3:8:284:3:108:-6.73851,0,-22.5757	0/0:99:98,1:98:3446:1:36:0,-26.2127,-306.746	0/1:98:75,22:75:2687:22:769:-39.6446,0,-212.421	0/0:116:116,0:116:4151:0:0:0,-34.9195,-373.743	0/0:32:32,0:32:1120:0:0:0,-9.63296,-101.097	0/0:27:27,0:27:932:0:0:0,-8.12781,-84.1887	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.4067	0/0:65:65,0:65:2302:0:0:0,-19.5669,-207.424	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:55:55,0:55:1924:0:0:0,-16.5566,-173.431	0/0:28:28,0:28:987:0:0:0,-8.42884,-89.143	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:35:24,11:24:860:11:396:-25.3562,0,-66.994	0/1:55:37,18:37:1302:18:648:-41.5841,0,-100.875	0/0:133:133,0:133:4739:0:0:0,-40.037,-426.631	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.635
chr12	20202298	.	T	C	73272.7	PASS	AB=0.318196;ABP=926.012;AC=141;AF=0.774725;AN=182;AO=3639;CIGAR=1X;DP=5847;DPB=5847;DPRA=16.4017;EPP=7896.31;EPPR=4797.62;GTI=13;LEN=1;MEANALT=1;MQM=59.806;MQMR=53.6241;NS=91;NUMALT=1;ODDS=1.23584;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=130128;QR=79109;RO=2208;RPL=1;RPP=7896.31;RPPR=4797.62;RPR=3638;RUN=1;SAF=0;SAP=7905;SAR=3639;SRF=0;SRP=4797.62;SRR=2208;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:7,9:7:252:9:320:-24.312,0,-18.179	0/1:83:54,29:54:1925:29:1029:-67.9357,0,-148.001	0/1:104:76,28:76:2724:28:1008:-59.7259,0,-213.361	1/1:185:0,185:0:0:185:6587:-592.882,-55.6906,0	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.8553	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0385	1/1:39:0,39:0:0:39:1385:-124.861,-11.7402,0	0/1:63:43,20:43:1548:20:705:-44.6139,0,-120.215	1/1:69:0,69:0:0:69:2476:-223.09,-20.7711,0	1/1:48:0,48:0:0:48:1724:-155.441,-14.4494,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:51:0,51:0:0:51:1801:-162.37,-15.3525,0	1/1:45:0,45:0:0:45:1601:-144.371,-13.5464,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:40:0,40:0:0:40:1424:-128.449,-12.0412,0	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:5:0,5:0:0:5:180:-16.5437,-1.50515,0	0/1:159:113,46:113:4048:46:1640:-100.023,0,-314.948	0/1:135:87,48:87:3128:48:1701:-112.721,0,-240.163	0/1:65:57,8:57:2048:8:283:-6.24499,0,-163.921	1/1:98:0,98:0:0:98:3524:-317.356,-29.5009,0	1/1:43:2,41:2:72:41:1461:-124.96,-6.12476,0	1/1:29:0,29:0:0:29:1040:-93.9098,-8.72987,0	0/1:245:154,91:154:5479:91:3245:-218.517,0,-417.525	1/1:112:0,112:0:0:112:3980:-358.383,-33.7154,0	1/1:21:0,21:0:0:21:752:-67.9863,-6.32163,0	0/1:273:179,94:179:6420:94:3380:-222.231,0,-493.577	0/1:131:82,49:82:2944:49:1741:-117.533,0,-225.218	1/1:73:1,72:1:36:72:2554:-226.504,-18.3795,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5213	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7188	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0648	0/1:158:106,52:106:3804:52:1859:-120.023,0,-293.984	0/1:92:71,21:71:2552:21:750:-40.1296,0,-201.685	1/1:8:0,8:0:0:8:284:-25.9,-2.40824,0	.:.:.:.:.:.:.:.	1/1:64:0,64:0:0:64:2289:-206.256,-19.2659,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:73:0,73:0:0:73:2612:-235.315,-21.9752,0	1/1:28:0,28:0:0:28:1008:-91.034,-8.42884,0	0/1:51:40,11:40:1436:11:396:-20.6302,0,-113.971	0/1:70:43,27:43:1533:27:968:-66.3634,0,-116.478	1/1:49:1,48:1:36:48:1728:-152.207,-11.1559,0	1/1:128:0,128:0:0:128:4573:-411.727,-38.5318,0	1/1:65:0,65:0:0:65:2328:-209.774,-19.567,0	1/1:61:0,61:0:0:61:2176:-195.972,-18.3628,0	0/1:142:89,53:89:3200:53:1904:-128.891,0,-244.711	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:59:0,59:0:0:59:2109:-190.073,-17.7608,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.21635	0/1:115:76,39:76:2732:39:1400:-91.6715,0,-210.521	1/1:17:0,17:0:0:17:604:-54.6007,-5.11751,0	0/1:8:2,6:2:72:6:216:-17.3804,0,-4.41893	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:22:0,22:0:0:22:792:-71.5772,-6.62266,0	0/1:66:48,18:48:1728:18:644:-38.4203,0,-135.376	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:204:0,204:0:0:204:7300:-657.023,-61.4101,0	0/1:167:112,55:112:4028:55:1961:-126.491,0,-310.217	1/1:39:1,38:1:36:38:1364:-119.467,-8.15094,0	0/1:87:65,22:65:2340:22:792:-45.4161,0,-184.342	0/1:127:83,44:83:2969:44:1580:-104.261,0,-227.58	0/1:152:132,20:132:4729:20:720:-19.3722,0,-377.723	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	0/1:18:8,10:8:269:10:360:-27.3258,0,-18.8162	0/1:49:28,21:28:1004:21:748:-52.8939,0,-75.4384	1/1:8:0,8:0:0:8:288:-26.265,-2.40824,0	0/1:60:45,15:45:1597:15:529:-29.8786,0,-125.725	0/1:78:49,29:49:1749:29:1017:-68.3528,0,-133.686	0/1:111:66,45:66:2368:45:1614:-112.134,0,-179.582	1/1:145:0,145:0:0:145:5212:-469.204,-43.6494,0	0/1:41:33,8:33:1184:8:288:-13.9252,0,-94.255	0/1:101:72,29:72:2580:29:1036:-63.1465,0,-199.778	0/1:11:6,5:6:216:5:180:-13.2324,0,-16.4441	1/1:98:2,96:2:72:96:3440:-302.981,-22.6777,0	0/1:99:69,30:69:2439:30:1066:-66.4475,0,-189.42	1/1:117:1,116:1:36:116:4149:-369.97,-31.6248,0	1/1:29:0,29:0:0:29:1044:-94.2701,-8.72987,0	1/1:27:0,27:0:0:27:964:-87.0706,-8.12781,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:65:0,65:0:0:65:2340:-210.845,-19.567,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:52:0,52:0:0:52:1864:-168.036,-15.6536,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:36:27,9:27:972:9:324:-18.6688,0,-76.6764	0/1:54:40,14:40:1436:14:504:-29.4401,0,-112.723	1/1:134:0,134:0:0:134:4771:-429.503,-40.338,0	1/1:52:0,52:0:0:52:1872:-168.757,-15.6536,0
chr12	20202308	.	ATTT	GTTT,GTTC	125651	PASS	AB=0.696494,0.29797;ABP=1093.61,1155.92;AC=147,37;AF=0.798913,0.201087;AN=184;AO=4903,973;CIGAR=1X3M,1X2M1X;DP=5905;DPB=5905;DPRA=0,1.80538;EPP=10502.6,2064.06;EPPR=9.52472;GTI=6;LEN=1,4;MEANALT=1.71739,2.45;MQM=58.7336,51.3124;MQMR=60;NS=92;NUMALT=2;ODDS=3.65191;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=175447,33367;QR=108;RO=3;RPL=4886,967;RPP=10502.6,2064.06;RPPR=9.52472;RPR=17,6;RUN=1,1;SAF=0,0;SAP=10649.7,2115.85;SAR=4903,973;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:15:0,13,2:0:0:13,2:464,59:-42.8568,-4.99219,-1.0788,-38.1673,0,-37.5652	1/2:84:0,59,24:0:0:59,24:2112,815:-237.972,-66.0777,-48.3169,-172.024,0,-164.799	1/2:106:0,75,31:0:0:75,31:2684,1069:-305.196,-86.6747,-64.0975,-218.868,0,-209.536	1/1:188:0,187,0:0:0:187,0:6693,0:-602.202,-56.2926,0,-602.202,-56.2926,-602.202	1/2:18:0,13,5:0:0:13,5:464,178:-52.6194,-14.8249,-10.9115,-38.1498,0,-36.6447	1/2:19:0,16,3:0:0:16,3:568,102:-54.8627,-8.59426,-3.77778,-46.6101,0,-45.707	1/1:38:0,37,0:0:0:37,0:1328,0:-119.608,-11.1381,0,-119.608,-11.1381,-119.608	1/2:63:0,44,18:0:0:44,18:1554,618:-176.206,-50.0568,-36.8115,-126.147,0,-120.728	1/1:70:2,68,0:2:72:68,0:2436,0:-212.655,-14.2354,0,-213.257,-20.47,-219.132	1/1:48:0,48,0:0:0:48,0:1719,0:-154.99,-14.4494,0,-154.99,-14.4494,-154.99	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:50:0,50,0:0:0:50,0:1796,0:-161.922,-15.0515,0,-161.922,-15.0515,-161.922	1/1:46:0,46,0:0:0:46,0:1634,0:-147.341,-13.8474,0,-147.341,-13.8474,-147.341	1/1:11:0,11,0:0:0:11,0:396,0:-35.9827,-3.31133,0,-35.9827,-3.31133,-35.9827	1/1:39:0,38,0:0:0:38,0:1359,0:-122.354,-11.4391,0,-122.354,-11.4391,-122.354	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:160:0,105,54:0:0:105,54:3749,1816:-451.63,-146.149,-114.541,-305.488,0,-289.233	1/2:138:0,90,47:0:0:90,47:3232,1612:-393.696,-130.231,-103.138,-263.454,0,-249.306	1/2:64:0,43,19:0:0:43,19:1548,658:-178.809,-52.8416,-39.8973,-126.008,0,-120.289	1/1:98:0,97,0:0:0:97,0:3475,0:-312.7,-29.1999,0,-312.7,-29.1999,-312.7	1/1:43:0,41,2:0:0:41,2:1464,71:-131.697,-12.3422,0,-125.927,-6.21767,-125.325	1/1:30:0,29,0:0:0:29,0:1044,0:-94.0212,-8.72987,0,-94.0212,-8.72987,-94.0212	1/2:251:0,202,49:0:0:202,49:7261,1640:-724.316,-132.364,-71.5559,-592.29,0,-577.54	1/1:112:0,112,0:0:0:112,0:4011,0:-361.164,-33.7154,0,-361.164,-33.7154,-361.164	1/1:22:0,21,0:0:0:21,0:745,0:-67.0086,-6.32163,0,-67.0086,-6.32163,-67.0086	1/2:279:0,199,80:0:0:199,80:7129,2722:-800.698,-219.763,-159.858,-581.279,0,-557.197	1/2:130:0,98,32:0:0:98,32:3520,1103:-376.604,-89.7127,-60.2117,-287.239,0,-277.606	1/1:73:0,73,0:0:0:73,0:2613,0:-235.406,-21.9752,0,-235.406,-21.9752,-235.406	1/2:6:0,5,1:0:0:5,1:176,36:-17.593,-3.2882,-1.78305,-14.6624,0,-14.3614	1/2:6:0,5,1:0:0:5,1:180,36:-17.9573,-3.2882,-1.78305,-15.0281,0,-14.7271	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	1/1:3:0,3,0:0:0:3,0:108,0:-10.0648,-0.90309,0,-10.0648,-0.90309,-10.0648	1/2:158:0,104,53:0:0:104,53:3732,1820:-451.511,-147.457,-116.15,-304.15,0,-288.195	1/2:93:0,63,30:0:0:63,30:2260,1036:-268.354,-84.3214,-65.3565,-184.381,0,-175.35	1/1:8:0,8,0:0:0:8,0:288,0:-26.264,-2.40824,0,-26.264,-2.40824,-26.264	1/1:1:0,1,0:0:0:1,0:32,0:-3.19931,-0.30103,0,-3.19931,-0.30103,-3.19931	1/1:62:0,62,0:0:0:62,0:2200,0:-198.249,-18.6639,0,-198.249,-18.6639,-198.249	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:73:0,73,0:0:0:73,0:2600,0:-234.237,-21.9752,0,-234.237,-21.9752,-234.237	1/1:28:0,28,0:0:0:28,0:1004,0:-90.6735,-8.42884,0,-90.6735,-8.42884,-90.6735	1/2:52:0,30,22:0:0:30,22:1080,761:-150.118,-62.0347,-53.0038,-88.4345,0,-81.8119	1/2:73:0,55,18:0:0:55,18:1963,593:-207.484,-47.5392,-30.9826,-160.277,0,-154.859	1/1:50:0,50,0:0:0:50,0:1796,0:-161.916,-15.0515,0,-161.916,-15.0515,-161.916	1/1:130:0,130,0:0:0:130,0:4645,0:-418.201,-39.1339,0,-418.201,-39.1339,-418.201	1/1:65:0,65,0:0:0:65,0:2328,0:-209.771,-19.567,0,-209.771,-19.567,-209.771	1/1:61:0,61,0:0:0:61,0:2169,0:-195.41,-18.3628,0,-195.41,-18.3628,-195.41	1/2:143:0,96,47:0:0:96,47:3448,1649:-415.1,-133.972,-105.073,-281.481,0,-267.333	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:61:0,61,0:0:0:61,0:2169,0:-195.472,-18.3628,0,-195.472,-18.3628,-195.472	1/1:34:0,34,0:0:0:34,0:1209,0:-109.114,-10.235,0,-109.114,-10.235,-109.114	1/1:5:0,5,0:0:0:5,0:180,0:-16.4405,-1.50515,0,-16.4405,-1.50515,-16.4405	1/2:119:0,76,41:0:0:76,41:2720,1421:-336.885,-115.227,-92.3485,-221.709,0,-209.366	1/1:17:0,16,0:0:0:16,0:576,0:-51.8872,-4.81648,0,-51.8872,-4.81648,-51.8872	1/2:8:0,7,1:0:0:7,1:252,30:-23.308,-2.69624,-0.589031,-20.919,0,-20.618	1/1:14:0,14,0:0:0:14,0:500,0:-45.3362,-4.21442,0,-45.3362,-4.21442,-45.3362	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/2:66:0,40,25:0:0:40,25:1426,867:-186.525,-70.326,-58.2848,-116.295,0,-108.769	1/1:2:0,2,0:0:0:2,0:72,0:-6.83179,-0.60206,0,-6.83179,-0.60206,-6.83179	1/1:208:0,208,0:0:0:208,0:7425,0:-668.268,-62.6142,0,-668.268,-62.6142,-668.268	1/2:168:0,120,46:0:0:120,46:4267,1596:-476.282,-128.899,-92.7749,-347.451,0,-333.604	1/1:39:0,38,1:0:0:38,1:1368,30:-123.115,-11.4391,0,-120.72,-8.7429,-120.419	1/2:88:0,63,25:0:0:63,25:2260,861:-254.354,-70.1164,-51.1515,-184.585,0,-177.059	1/2:127:0,82,42:0:0:82,42:2926,1441:-354.88,-116.529,-91.8448,-238.381,0,-225.737	1/2:154:0,107,46:0:0:107,46:3839,1560:-438.174,-125.492,-93.2816,-312.774,0,-298.927	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:18:0,14,3:0:0:14,3:504,97:-48.941,-7.80308,-3.58866,-41.1383,0,-40.2352	1/2:48:0,31,17:0:0:31,17:1101,570:-136.051,-46.4076,-37.0756,-89.9854,0,-84.8679	1/1:8:0,8,0:0:0:8,0:281,0:-25.6294,-2.40824,0,-25.6294,-2.40824,-25.6294	1/2:61:0,42,19:0:0:42,19:1504,651:-175.644,-53.0688,-40.4255,-122.922,0,-117.202	1/2:79:0,48,31:0:0:48,31:1724,1079:-228.265,-87.6841,-73.2347,-140.932,0,-131.601	1/2:112:0,89,23:0:0:89,23:3175,792:-323.167,-64.5217,-37.73,-258.992,0,-252.068	1/1:144:0,144,0:0:0:144,0:5168,0:-465.247,-43.3483,0,-465.247,-43.3483,-465.247	1/2:41:0,29,12:0:0:29,12:1044,414:-118.912,-33.8938,-25.164,-85.3669,0,-81.7545	1/2:101:0,55,46:0:0:55,46:1972,1586:-288.426,-127.675,-111.118,-161.1,0,-147.252	1/2:11:0,7,3:0:0:7,3:252,107:-29.2513,-8.69736,-6.59015,-20.5526,0,-19.6495	1/1:99:0,98,1:0:0:98,1:3500,36:-314.842,-29.5009,0,-311.913,-26.2127,-311.612	1/2:101:0,78,23:0:0:78,23:2771,773:-288.409,-62.7551,-39.2748,-225.994,0,-219.07	1/1:118:0,118,0:0:0:118,0:4217,0:-379.7,-35.5215,0,-379.7,-35.5215,-379.7	1/1:31:0,30,0:0:0:30,0:1069,0:-96.2646,-9.0309,0,-96.2646,-9.0309,-96.2646	1/1:27:0,27,0:0:0:27,0:959,0:-86.6192,-8.12781,0,-86.6192,-8.12781,-86.6192	1/1:20:0,20,0:0:0:20,0:720,0:-65.1288,-6.0206,0,-65.1288,-6.0206,-65.1288	1/1:65:0,65,0:0:0:65,0:2327,0:-209.673,-19.567,0,-209.673,-19.567,-209.673	1/1:19:0,19,0:0:0:19,0:684,0:-61.8903,-5.71957,0,-61.8903,-5.71957,-61.8903	1/1:54:0,54,0:0:0:54,0:1935,0:-174.422,-16.2556,0,-174.422,-16.2556,-174.422	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9144,-8.72987,0,-93.9144,-8.72987,-93.9144	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:37:0,25,12:0:0:25,12:896,418:-107.147,-34.2576,-26.7318,-73.24,0,-69.6277	1/2:55:0,37,18:0:0:37,18:1313,644:-159.294,-52.3675,-41.2294,-107.281,0,-101.863	1/1:134:1,133,0:1:36:133,0:4776,0:-426.351,-36.7397,0,-426.652,-40.037,-429.59	1/1:54:0,54,0:0:0:54,0:1935,0:-174.423,-16.2556,0,-174.423,-16.2556,-174.423
chr12	20202322	.	G	A	72935.3	PASS	AB=0.316163;ABP=954.697;AC=144;AF=0.782609;AN=184;AO=3633;CIGAR=1X;DP=5863;DPB=5863;DPRA=21.4652;EPP=7891.97;EPPR=4843.22;GTI=15;LEN=1;MEANALT=1.01099;MQM=59.8249;MQMR=53.624;NS=92;NUMALT=1;ODDS=1.06731;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129873;QR=79541;RO=2229;RPL=3633;RPP=7891.97;RPPR=4843.22;RPR=0;RUN=1;SAF=0;SAP=7891.97;SAR=3633;SRF=0;SRP=4843.22;SRR=2229;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:14:7,7:7:252:7:252:-18.8145,0,-18.7811	0/1:83:54,29:54:1924:29:1036:-68.5684,0,-147.808	0/1:107:77,30:77:2732:30:1076:-64.9393,0,-212.866	1/1:189:0,189:0:0:189:6771:-609.431,-56.8947,0	0/1:18:13,5:13:468:5:180:-11.1335,0,-36.9225	0/1:19:10,9:10:360:9:320:-23.4228,0,-26.9726	1/1:39:0,39:0:0:39:1404:-126.573,-11.7402,0	0/1:65:44,21:44:1560:21:741:-47.3967,0,-120.673	1/1:68:0,68:0:0:68:2448:-220.571,-20.47,0	1/1:49:0,49:0:0:49:1744:-157.24,-14.7505,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:50:0,50:0:0:50:1779:-160.392,-15.0515,0	1/1:45:0,45:0:0:45:1612:-145.363,-13.5464,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:39:0,39:0:0:39:1392:-125.571,-11.7402,0	1/1:17:0,17:0:0:17:603:-54.5995,-5.11751,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:160:115,45:115:4107:45:1597:-95.8511,0,-319.947	0/1:139:91,48:91:3248:48:1724:-113.588,0,-249.761	0/1:64:56,8:56:1992:8:288:-7.00057,0,-159.191	1/1:98:0,98:0:0:98:3510:-316.099,-29.5009,0	1/1:43:2,41:2:72:41:1471:-125.863,-6.12476,0	1/1:29:0,29:0:0:29:1035:-93.4585,-8.72987,0	0/1:250:158,92:158:5648:92:3300:-221.961,0,-431.429	1/1:112:0,112:0:0:112:3985:-358.834,-33.7154,0	1/1:21:0,21:0:0:21:747:-67.5239,-6.32163,0	0/1:278:184,94:184:6592:94:3380:-220.728,0,-507.467	0/1:130:82,48:82:2936:48:1703:-114.417,0,-224.809	1/1:70:1,69:1:36:69:2465:-218.503,-17.4764,0	0/1:6:5,1:5:180:1:32:-1.39313,0,-14.7152	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7188	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0648	0/1:157:106,51:106:3779:51:1819:-116.726,0,-292.055	0/1:93:73,20:73:2608:20:712:-36.4109,0,-206.431	1/1:8:0,8:0:0:8:288:-26.264,-2.40824,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	1/1:64:0,64:0:0:64:2288:-206.171,-19.2659,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:72:0,72:0:0:72:2588:-233.156,-21.6742,0	1/1:28:0,28:0:0:28:999:-90.2222,-8.42884,0	0/1:52:41,11:41:1463:11:396:-20.3292,0,-116.096	0/1:70:42,28:42:1504:28:977:-67.1648,0,-113.99	1/1:49:1,48:1:36:48:1724:-151.85,-11.1559,0	1/1:127:0,127:0:0:127:4543:-409.028,-38.2308,0	1/1:64:0,64:0:0:64:2280:-205.453,-19.2659,0	1/1:59:0,59:0:0:59:2116:-190.699,-17.7608,0	0/1:144:91,53:91:3235:53:1896:-127.57,0,-247.294	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:58:0,58:0:0:58:2080:-187.467,-17.4597,0	1/1:34:0,33:0:0:33:1188:-106.956,-9.93399,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.21635	0/1:119:79,40:79:2828:40:1427:-92.8916,0,-218.063	1/1:15:0,15:0:0:15:536:-48.5725,-4.51545,0	0/1:8:2,6:2:72:6:216:-17.3804,0,-4.41893	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:24:0,24:0:0:24:860:-77.6934,-7.22472,0	0/1:66:48,18:48:1707:18:644:-38.4217,0,-133.498	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	1/1:205:0,205:0:0:205:7348:-661.343,-61.7112,0	0/1:165:110,55:110:3919:55:1972:-128.085,0,-301.059	1/1:39:1,38:1:36:38:1340:-117.303,-8.15094,0	0/1:88:66,22:66:2356:22:784:-44.3933,0,-185.499	0/1:124:81,43:81:2888:43:1532:-100.845,0,-221.549	0/1:152:132,20:132:4708:20:716:-19.0112,0,-375.792	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:18:8,10:8:280:10:345:-25.9623,0,-19.8164	0/1:47:26,21:26:923:21:756:-54.2179,0,-68.7747	1/1:8:0,8:0:0:8:288:-26.265,-2.40824,0	0/1:61:45,16:45:1608:16:563:-32.6326,0,-126.411	0/1:79:50,29:50:1800:29:1040:-70.1263,0,-137.959	0/1:111:65,46:65:2324:46:1636:-114.11,0,-175.636	1/1:143:1,142:1:36:142:5067:-452.568,-39.449,0	0/1:41:33,8:33:1176:8:288:-13.9252,0,-93.5413	0/1:100:72,28:72:2572:28:994:-59.6683,0,-199.901	0/1:11:6,5:6:216:5:176:-12.8654,0,-16.4441	1/1:94:2,92:2:72:92:3268:-287.515,-21.4735,0	0/1:102:71,31:71:2513:31:1104:-68.9609,0,-195.173	1/1:116:1,115:1:36:115:4112:-366.648,-31.3238,0	1/1:32:0,32:0:0:32:1148:-103.615,-9.63296,0	1/1:27:0,27:0:0:27:968:-87.4312,-8.12781,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:66:0,66:0:0:66:2356:-212.283,-19.868,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:53:0,53:0:0:53:1887:-170.104,-15.9546,0	1/1:29:0,29:0:0:29:1035:-93.4631,-8.72987,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:37:28,9:28:1004:9:324:-18.3677,0,-79.248	0/1:53:39,14:39:1375:14:491:-28.5642,0,-107.736	1/1:134:0,134:0:0:134:4803:-432.408,-40.338,0	1/1:53:0,53:0:0:53:1904:-171.635,-15.9546,0
chr12	20202332	.	G	T	12152.2	PASS	AB=0.298649;ABP=1150.29;AC=37;AF=0.201087;AN=184;AO=977;CIGAR=1X;DP=5912;DPB=5912;DPRA=1.8078;EPP=2124.54;EPPR=10708.4;GTI=6;LEN=1;MEANALT=1.075;MQM=51.262;MQMR=58.7154;NS=92;NUMALT=1;ODDS=1.77093;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35043;QR=176655;RO=4930;RPL=977;RPP=2124.54;RPPR=10708.4;RPR=0;RUN=1;SAF=0;SAP=2124.54;SAR=977;SRF=0;SRP=10708.4;SRR=4930;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:15:13,2:13:464:2:72:-2.30408,0,-37.5652	0/1:81:56,25:56:2012:25:892:-55.8019,0,-156.88	0/1:108:77,31:77:2752:31:1112:-67.2894,0,-215.049	0/0:188:187,0:187:6674:0:0:0,-56.2926,-600.352	0/1:19:14,5:14:489:5:180:-10.7909,0,-38.5372	0/1:19:16,3:16:576:3:108:-4.33027,0,-46.4281	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.614	0/1:64:46,18:46:1640:18:644:-38.8821,0,-128.15	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.609	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.801	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:51:51,0:51:1810:0:0:0,-15.3525,-163.18	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.322	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.292	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:5:5,0:5:167:0:0:0,-1.50515,-15.3573	0/1:161:106,55:106:3804:55:1965:-127.129,0,-293.899	0/1:139:91,48:91:3256:48:1728:-113.195,0,-251.218	0/1:65:46,19:46:1644:19:684:-41.5076,0,-128.27	0/0:99:99,0:99:3537:0:0:0,-29.802,-318.526	0/0:43:41,2:41:1464:2:72:0,-6.12476,-125.232	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2702	0/1:253:204,49:204:7324:49:1760:-80.9463,0,-582.63	0/0:114:114,0:114:4069:0:0:0,-34.3174,-366.385	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.5059	0/1:281:202,79:202:7249:79:2825:-168.144,0,-567.396	0/1:130:98,32:98:3501:32:1148:-64.2205,0,-275.902	0/0:72:72,0:72:2572:0:0:0,-21.6742,-231.722	0/1:6:5,1:5:176:1:36:-1.78305,0,-14.3592	0/1:6:5,1:5:180:1:36:-1.78305,0,-14.7271	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0648	0/1:159:105,53:105:3772:53:1904:-123.098,0,-291.681	0/1:94:64,30:64:2300:30:1076:-68.6158,0,-178.645	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.264	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.247	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.035	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.034	0/1:51:30,21:30:1071:21:756:-52.8428,0,-81.3013	0/1:71:53,18:53:1866:18:648:-35.5044,0,-146.755	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.556	0/0:128:128,0:128:4588:0:0:0,-38.5318,-413.073	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.251	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.817	0/1:144:97,47:97:3484:47:1684:-107.887,0,-270.27	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.061	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4405	0/1:119:76,42:76:2713:42:1512:-99.6977,0,-208.372	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.1703	0/1:8:5,1:5:180:1:36:-1.42386,0,-14.3852	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0541	0/1:67:42,25:42:1504:25:896:-60.372,0,-115.348	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83179	0/0:207:207,0:207:7420:0:0:0,-62.3132,-667.819	0/1:168:121,47:121:4340:47:1684:-99.9735,0,-339.693	0/0:39:38,1:38:1368:1:36:0,-8.15094,-119.827	0/1:87:62,25:62:2228:25:896:-54.5617,0,-174.478	0/1:125:82,43:82:2944:43:1536:-99.5435,0,-227.373	0/1:151:107,44:107:3844:44:1576:-96.0525,0,-300.226	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:18:15,3:15:540:3:108:-4.6313,0,-43.2332	0/1:49:32,17:32:1152:17:612:-40.5236,0,-88.8861	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.265	0/1:60:41,19:41:1476:19:684:-43.6729,0,-114.984	0/1:80:49,31:49:1748:31:1116:-76.187,0,-133.459	0/1:113:89,24:89:3192:24:864:-43.8699,0,-253.299	0/0:144:144,0:144:5172:0:0:0,-43.3483,-465.607	0/1:41:29,12:29:1044:12:432:-26.7804,0,-81.7545	0/1:102:56,46:56:1997:46:1652:-116.083,0,-149.202	0/1:11:8,3:8:288:3:108:-6.73851,0,-22.9377	0/0:99:98,1:98:3501:1:36:0,-26.2127,-311.694	0/1:102:78,24:78:2808:24:849:-45.6146,0,-222.096	0/0:115:115,0:115:4132:0:0:0,-34.6184,-372.05	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.739	0/0:27:27,0:27:953:0:0:0,-8.12781,-86.0831	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.123	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:56:56,0:56:2012:0:0:0,-16.8577,-181.35	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:36:24,12:24:864:12:432:-28.2855,0,-67.0509	0/1:55:37,18:37:1324:18:648:-41.5841,0,-102.854	0/0:134:134,0:134:4797:0:0:0,-40.338,-431.838	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.234
chr12	20249811	.	AGCA	CGCA,CGCG	590402	PASS	AB=0.48384,0.511493;ABP=28.7675,16.0374;AC=146,42;AF=0.776596,0.223404;AN=188;AO=16082,5849;CIGAR=1X3M,1X2M1X;DP=22033;DPB=22064.2;DPRA=0,1.68186;EPP=34924.6,12704;EPPR=46.4397;GTI=2;LEN=1,4;MEANALT=2.38298,2.94643;MQM=59.9965,59.974;MQMR=60;NS=94;NUMALT=2;ODDS=2.86386;PAIRED=0,0;PAIREDR=0;PAO=62,63;PQA=2200.5,2236.5;PQR=0;PRO=0;QA=568102,203026;QR=624;RO=20;RPL=7455,2630;RPP=188.479,131.807;RPPR=6.91895;RPR=8627,3219;RUN=1,1;SAF=7455,2630;SAP=188.479,131.807;SAR=8627,3219;SRF=7;SRP=6.91895;SRR=13;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:147:0,50,97:0:0:50,97:1763,3343:-415.443,-271.892,-256.841,-143.901,0,-114.701	1/2:383:0,210,169:0:0:210,169:7456,5865:-1084.34,-476.819,-413.602,-607.59,0,-556.716	1/2:327:1,191,135:1:34:191,135:6748,4706:-929.226,-379.974,-325.235,-546.806,0,-508.925	1/1:452:1,447,2:1:36:447,2:15880,71:-1425.29,-131.626,0,-1419.81,-128.785,-1422.14	1/2:210:0,97,113:0:0:97,113:3421,3938:-598.735,-320.182,-290.982,-278.485,0,-244.468	1/2:133:0,59,74:0:0:59,74:2108,2587:-382.618,-210.744,-192.983,-172.169,0,-149.893	1/1:198:1,197,0:1:36:197,0:6962,0:-623.053,-56.0057,0,-623.354,-59.3029,-626.291	1/2:501:0,226,273:0:0:226,273:7985,9406:-1414.3,-764.005,-695.972,-650.349,0,-568.168	1/1:247:1,246,0:1:35:246,0:8698,0:-779.323,-70.8558,0,-779.624,-74.0534,-782.472	1/1:205:0,205,0:0:0:205,0:7234,0:-651.119,-61.7112,0,-651.119,-61.7112,-651.119	1/1:173:0,171,0:0:0:171,0:6044,0:-543.62,-51.4761,0,-543.62,-51.4761,-543.62	1/1:211:0,210,0:0:0:210,0:7383,0:-664.276,-63.2163,0,-664.276,-63.2163,-664.276	1/1:147:0,147,0:0:0:147,0:5107,0:-459.718,-44.2514,0,-459.718,-44.2514,-459.718	1/1:168:0,167,0:0:0:167,0:5866,0:-527.807,-50.272,0,-527.807,-50.272,-527.807	1/1:158:0,158,0:0:0:158,0:5593,0:-503.376,-47.5627,0,-503.376,-47.5627,-503.376	1/1:140:0,139,0:0:0:139,0:4904,0:-441.155,-41.8432,0,-441.155,-41.8432,-441.155	1/1:129:0,129,0:0:0:129,0:4570,0:-411.467,-38.8329,0,-411.467,-38.8329,-411.467	1/1:106:0,106,0:0:0:106,0:3728,0:-335.722,-31.9092,0,-335.722,-31.9092,-335.722	1/1:85:0,85,0:0:0:85,0:3008,0:-270.951,-25.5876,0,-270.951,-25.5876,-270.951	1/2:410:0,221,186:0:0:221,186:7863,6479:-1167.73,-526.913,-460.385,-640.866,0,-584.874	1/2:377:0,184,192:0:0:184,192:6507,6636:-1069.23,-539.251,-483.862,-530.04,0,-472.243	1/2:265:1,68,195:1:25:68,195:2407,6761:-743.45,-547.686,-529.164,-194.217,0,-137.463	1/1:326:0,321,2:0:0:321,2:11347,70:-1020.77,-96.6306,0,-1015.08,-90.9381,-1014.48	1/1:238:0,220,18:0:0:220,18:7749,616:-697.104,-66.2266,0,-647.106,-15.9422,-641.687	1/1:208:0,207,1:0:0:207,1:7287,36:-655.527,-62.3132,0,-652.589,-59.016,-652.288	1/2:758:1,354,400:1:35:354,400:12539,13853:-2143.93,-1122.79,-1019.07,-1018.58,0,-901.018	1/1:549:0,546,0:0:0:546,0:19308,0:-1736.93,-164.362,0,-1736.93,-164.362,-1736.93	1/1:65:0,65,0:0:0:65,0:2274,0:-204.92,-19.567,0,-204.92,-19.567,-204.92	1/2:550:0,265,283:0:0:265,283:9381,9885:-1568.24,-804.103,-724.33,-764.167,0,-678.975	1/2:360:0,171,188:0:0:171,188:5998,6577:-1023.33,-535.217,-483.741,-488.247,0,-431.653	1/1:238:0,234,2:0:0:234,2:8261,72:-743.16,-70.441,0,-737.285,-64.5537,-736.683	1/2:16:0,6,10:0:0:6,10:216,356:-46.9971,-29.3711,-27.5649,-17.9843,0,-14.974	1/2:35:0,13,22:0:0:13,22:464,769:-100.68,-62.8506,-58.9372,-38.1286,0,-31.5059	1/1:8:0,8,0:0:0:8,0:273,0:-24.9002,-2.40824,0,-24.9002,-2.40824,-24.9002	1/2:28:0,14,14:0:0:14,14:504,477:-80.1739,-39.0405,-34.826,-41.4837,0,-37.2693	1/2:49:0,19,30:0:0:19,30:669,1017:-137.27,-82.8024,-77.0828,-54.8144,0,-45.7835	1/2:471:0,238,233:0:0:238,233:8442,8113:-1347.68,-659.894,-588.249,-687.963,0,-617.823	1/2:449:0,245,202:0:0:245,202:8674,7028:-1278.05,-571.487,-497.735,-706.603,0,-645.795	1/1:98:0,98,0:0:0:98,0:3417,0:-307.685,-29.5009,0,-307.685,-29.5009,-307.685	1/2:7:0,3,4:0:0:3,4:108,128:-19.4622,-10.6328,-9.72973,-9.17208,0,-7.96796	1/1:347:2,340,0:2:57:340,0:12015,0:-1075.82,-97.8147,0,-1076.42,-102.35,-1080.95	1/1:78:0,78,0:0:0:78,0:2776,0:-250.082,-23.4803,0,-250.082,-23.4803,-250.082	1/1:387:0,386,1:0:0:386,1:13617,36:-1224.97,-116.198,0,-1222.03,-112.9,-1221.73	1/1:143:1,142,0:1:24:142,0:4980,0:-445.771,-40.6474,0,-446.072,-42.7463,-447.93	1/2:136:0,60,76:0:0:60,76:2077,2629:-382.768,-213.981,-195.919,-169.133,0,-146.255	1/2:243:0,106,137:0:0:106,137:3757,4753:-692.773,-386.702,-354.793,-306.422,0,-265.181	1/1:318:0,317,0:0:0:317,0:11179,0:-1005.76,-95.4265,0,-1005.76,-95.4265,-1005.76	1/1:532:1,523,4:1:29:523,4:18369,142:-1649.86,-155.139,0,-1638.59,-145.872,-1639.69	1/1:259:0,258,1:0:0:258,1:9062,36:-815.192,-77.6657,0,-812.254,-74.3685,-811.953	1/1:294:0,293,0:0:0:293,0:10342,0:-930.464,-88.2018,0,-930.464,-88.2018,-930.464	1/2:363:0,159,203:0:0:159,203:5618,7055:-1031.09,-573.561,-525.697,-457.523,0,-396.414	1/1:27:0,27,0:0:0:27,0:940,0:-84.9102,-8.12781,0,-84.9102,-8.12781,-84.9102	1/1:316:0,316,0:0:0:316,0:11198,0:-1007.71,-95.1255,0,-1007.71,-95.1255,-1007.71	1/1:92:0,91,1:0:0:91,1:3242,36:-291.641,-27.3937,0,-288.704,-24.0965,-288.403	1/2:47:0,27,20:0:0:27,20:932,68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chr12	20249819	.	C	A	215719	PASS	AB=0.454248;ABP=147.662;AC=145;AF=0.771277;AN=188;AO=9531;CIGAR=1X;DP=13912;DPB=13912;DPRA=29.9075;EPP=20699.3;EPPR=9485.83;GTI=9;LEN=1;MEANALT=1.13978;MQM=59.9891;MQMR=59.9819;NS=94;NUMALT=1;ODDS=1.21037;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=339358;QR=155168;RO=4367;RPL=723;RPP=14895.8;RPPR=1970.17;RPR=8808;RUN=1;SAF=723;SAP=14895.8;SAR=8808;SRF=1189;SRP=1970.17;SRR=3178;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:49:35,14:35:1222:14:496:-30.2238,0,-95.5316	0/1:301:127,174:127:4510:174:6233:-470.453,0,-315.461	0/1:162:62,100:62:2216:100:3556:-271.481,0,-150.938	1/1:297:1,296:1:32:296:10501:-941.813,-86.2066,0	0/1:137:76,61:76:2724:61:2184:-155.585,0,-204.162	0/1:78:39,39:39:1379:39:1383:-101.288,0,-100.928	1/1:114:0,113:0:0:113:4009:-360.641,-34.0164,0	0/1:317:164,153:164:5840:153:5470:-396.998,0,-430.287	1/1:142:0,142:0:0:142:5043:-454.017,-42.7463,0	1/1:119:0,119:0:0:119:4243:-382.05,-35.8226,0	1/1:55:0,55:0:0:55:1956:-176.315,-16.5567,0	1/1:68:0,68:0:0:68:2410:-217.154,-20.47,0	1/1:67:0,67:0:0:67:2391:-215.447,-20.169,0	1/1:69:0,69:0:0:69:2456:-221.295,-20.7711,0	1/1:68:0,67:0:0:67:2389:-214.907,-20.169,0	1/1:64:0,64:0:0:64:2279:-205.372,-19.2659,0	1/1:77:0,76:0:0:76:2717:-244.451,-22.8783,0	1/1:77:0,77:0:0:77:2729:-245.852,-23.1793,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:343:181,162:181:6464:162:5717:-411.397,0,-478.595	0/1:204:110,93:110:3882:93:3302:-235.93,0,-288.107	0/1:259:191,68:191:6789:68:2391:-137.48,0,-533.12	1/1:136:2,134:2:72:134:4755:-421.274,-34.1058,0	1/1:186:9,177:9:320:177:6304:-538.313,-26.8492,0	1/1:105:0,105:0:0:105:3733:-336.165,-31.6082,0	0/1:753:396,357:396:14128:357:12757:-921.277,0,-1043.98	1/1:237:0,237:0:0:237:8448:-760.325,-71.3441,0	1/1:28:0,28:0:0:28:991:-89.5035,-8.42884,0	0/1:543:279,263:279:9908:263:9379:-680.557,0,-728.147	0/1:213:120,93:120:4268:93:3317:-234.628,0,-320.17	1/1:142:2,140:2:72:140:4998:-443.13,-35.9095,0	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:17:11,6:11:392:6:216:-14.673,0,-30.5025	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:5:3,2:3:93:2:72:-5.33157,0,-7.17158	0/1:466:229,236:229:8091:236:8426:-618.004,0,-587.878	0/1:290:119,171:119:4238:171:6059:-458.117,0,-294.302	1/1:51:0,51:0:0:51:1816:-163.721,-15.3525,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:245:0,245:0:0:245:8715:-784.117,-73.7524,0	1/1:25:0,25:0:0:25:887:-80.1481,-7.52575,0	1/1:224:1,223:1:36:223:7942:-711.206,-63.8324,0	1/1:76:0,76:0:0:76:2694:-242.702,-22.8783,0	0/1:103:72,31:72:2535:31:1116:-69.7456,0,-197.394	0/1:241:133,108:133:4730:108:3868:-275.767,0,-353.313	1/1:173:0,173:0:0:173:6143:-552.97,-52.0782,0	1/1:272:3,269:3:108:269:9618:-855.5,-71.805,0	1/1:151:0,151:0:0:151:5360:-482.532,-45.4555,0	1/1:208:0,207:0:0:207:7331:-659.63,-62.3132,0	0/1:358:199,159:199:7090:159:5691:-404.539,0,-530.394	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:175:0,175:0:0:175:6250:-562.593,-52.6803,0	1/1:86:1,85:1:36:85:3036:-269.872,-22.2903,0	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7237	0/1:159:67,92:67:2333:92:3275:-247.107,0,-162.364	1/1:70:0,69:0:0:69:2428:-218.387,-20.7711,0	0/1:53:15,38:15:540:38:1355:-106.295,0,-32.9819	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:68:0,68:0:0:68:2431:-219.045,-20.47,0	0/1:163:119,44:119:4231:44:1580:-93.4237,0,-331.876	1/1:6:0,6:0:0:6:199:-18.2345,-1.80618,0	1/1:433:1,432:1:36:432:15371:-1379.51,-126.748,0	0/1:469:250,219:250:8919:219:7797:-560.58,0,-661.514	0/1:101:11,90:11:396:90:3207:-258.449,0,-5.57872	0/1:162:96,66:96:3407:66:2327:-160.922,0,-258.08	0/1:414:273,139:273:9742:139:4964:-322.567,0,-752.419	0/1:209:172,37:172:6114:37:1319:-56.0959,0,-487.447	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	0/1:97:36,61:36:1264:61:2161:-165.555,0,-84.8599	0/1:129:72,57:72:2549:57:2035:-144.589,0,-190.827	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:100:56,44:56:1965:44:1567:-111.218,0,-147.015	0/1:94:42,52:42:1488:52:1842:-137.761,0,-105.918	0/1:202:109,92:109:3844:92:3264:-233.153,0,-285.329	1/1:222:1,221:1:36:221:7890:-706.529,-63.2304,0	0/1:156:97,59:97:3460:59:2104:-142.668,0,-264.653	0/1:178:102,76:102:3614:76:2696:-189.3,0,-271.882	0/1:15:8,7:8:279:7:252:-18.5135,0,-20.9321	1/1:135:0,135:0:0:135:4816:-433.593,-40.6391,0	0/1:167:91,76:91:3256:76:2695:-192.523,0,-242.989	1/1:253:3,250:3:108:250:8911:-791.9,-66.0854,0	1/1:119:0,117:0:0:117:4187:-376.651,-35.2205,0	1/1:61:0,60:0:0:60:2118:-190.526,-18.0618,0	1/1:106:0,106:0:0:106:3764:-338.963,-31.9092,0	1/1:174:0,174:0:0:174:6204:-558.458,-52.3792,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	1/1:83:0,83:0:0:83:2960:-266.633,-24.9855,0	1/1:64:0,64:0:0:64:2257:-203.392,-19.2659,0	1/1:32:0,32:0:0:32:1134:-102.368,-9.63296,0	0/1:65:29,36:29:1007:36:1296:-97.377,0,-71.373	0/1:154:127,27:127:4505:27:970:-41.2591,0,-359.262	1/1:119:2,117:2:72:117:4169:-368.553,-28.9858,0	1/1:111:0,111:0:0:111:3955:-356.143,-33.4143,0
chr12	20249859	.	C	G	52421	PASS	AB=0.49992;ABP=3.01065;AC=43;AF=0.228723;AN=188;AO=3168;CIGAR=1X;DP=12070;DPB=12070;DPRA=1.67672;EPP=6882.23;EPPR=19296.5;GTI=5;LEN=1;MEANALT=1.15385;MQM=59.9539;MQMR=59.9853;NS=94;NUMALT=1;ODDS=0.782497;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=112298;QR=317352;RO=8889;RPL=3168;RPP=6882.23;RPPR=19305.2;RPR=0;RUN=1;SAF=0;SAP=6882.23;SAR=3168;SRF=1;SRP=19296.5;SRR=8888;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:48:15,32:15:521:32:1148:-89.2669,0,-32.8493	0/1:302:176,126:176:6301:126:4447:-309.491,0,-476.27	0/1:161:101,60:101:3594:60:2121:-142.691,0,-275.199	0/0:304:304,0:304:10826:0:0:0,-91.5131,-974.24	0/1:137:61,76:61:2192:76:2703:-202.273,0,-156.304	0/1:78:39,39:39:1400:39:1396:-102.459,0,-102.819	0/0:110:110,0:110:3920:0:0:0,-33.1133,-352.995	0/1:313:153,160:153:5446:160:5678:-416.919,0,-396.04	0/0:141:141,0:141:5045:0:0:0,-42.4452,-454.194	0/0:117:117,0:117:4196:0:0:0,-35.2205,-377.821	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.604	0/0:66:66,0:66:2327:0:0:0,-19.868,-209.685	0/0:70:70,0:70:2497:0:0:0,-21.0721,-224.981	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:65:65,0:65:2312:0:0:0,-19.5669,-208.338	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.642	0/0:78:76,0:76:2723:0:0:0,-22.8783,-244.972	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/1:283:160,123:160:5706:123:4411:-311.969,0,-428.465	0/1:205:92,113:92:3277:113:3990:-297.579,0,-233.438	0/1:185:47,138:47:1692:138:4897:-385.194,0,-96.8763	0/0:136:134,2:134:4746:2:68:0,-34.4834,-419.985	0/0:186:177,9:177:6295:9:320:0,-26.8492,-537.5	0/0:106:106,0:106:3770:0:0:0,-31.9092,-339.498	0/1:467:219,247:219:7830:247:8705:-642.907,0,-564.235	0/0:240:240,0:240:8562:0:0:0,-72.2472,-770.575	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:371:186,184:186:6631:184:6556:-478.385,0,-485.126	0/1:216:95,120:95:3381:120:4244:-317.2,0,-239.572	0/0:142:141,1:141:5040:1:36:0,-39.148,-450.147	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:218:115,103:115:4132:103:3666:-264.433,0,-306.438	0/1:291:175,115:175:6261:115:4042:-276.462,0,-476.073	0/0:51:51,0:51:1832:0:0:0,-15.3525,-165.161	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/0:247:246,0:246:8748:0:0:0,-74.0534,-785.59	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:227:227,0:227:8088:0:0:0,-68.3338,-727.935	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.772	0/1:78:32,46:32:1133:46:1613:-121.974,0,-78.7963	0/1:127:47,80:47:1672:80:2805:-214.457,0,-112.536	0/0:174:174,0:174:6232:0:0:0,-52.3792,-560.975	0/0:274:270,1:270:9617:1:36:0,-78.3407,-861.883	0/0:157:157,0:157:5598:0:0:0,-47.2617,-503.941	0/0:208:208,0:208:7422:0:0:0,-62.6142,-668.025	0/1:234:124,110:124:4422:110:3908:-281.475,0,-327.709	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:180:179,1:179:6413:1:36:0,-50.5871,-573.657	0/0:33:32,1:32:1148:1:36:0,-6.33571,-100.032	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3601	0/1:159:92,67:92:3289:67:2376:-166.235,0,-248.364	0/0:69:69,0:69:2442:0:0:0,-20.7711,-220.004	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/1:88:45,43:45:1616:43:1536:-112.014,0,-119.239	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4238	0/0:309:308,1:308:10977:1:32:0,-89.819,-984.625	0/1:387:223,164:223:8001:164:5822:-407.597,0,-603.608	0/1:102:92,10:92:3285:10:360:-2.03924,0,-265.163	0/1:120:64,56:64:2258:56:1976:-141.991,0,-167.356	0/1:287:140,147:140:4993:147:5175:-379.495,0,-363.093	0/1:106:37,69:37:1332:69:2464:-190.105,0,-88.2732	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:93:60,33:60:2148:33:1176:-78.152,0,-165.592	0/1:97:45,52:45:1604:52:1843:-136.95,0,-115.45	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:101:46,55:46:1641:55:1952:-145.55,0,-117.573	0/1:94:50,43:50:1788:43:1536:-110.324,0,-132.994	0/1:205:97,107:97:3451:107:3794:-279.888,0,-249.034	0/0:223:222,1:222:7957:1:32:0,-63.9304,-712.95	0/1:161:59,102:59:2109:102:3584:-274.284,0,-141.611	0/1:177:77,100:77:2747:100:3588:-269.844,0,-194.19	0/1:15:7,8:7:252:8:288:-21.752,0,-18.5135	0/0:132:132,0:132:4740:0:0:0,-39.736,-426.757	0/1:169:77,92:77:2733:92:3257:-242.478,0,-195.338	0/0:251:250,1:250:8912:1:36:0,-71.9603,-798.462	0/0:118:118,0:118:4244:0:0:0,-35.5215,-382.137	0/0:65:65,0:65:2290:0:0:0,-19.5669,-206.359	0/0:107:107,0:107:3829:0:0:0,-32.2102,-344.805	0/0:180:180,0:180:6472:0:0:0,-54.1854,-582.562	0/0:37:37,0:37:1319:0:0:0,-11.1381,-119.011	0/0:83:83,0:83:2935:0:0:0,-24.9855,-264.381	0/0:67:67,0:67:2386:0:0:0,-20.169,-214.997	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:64:36,28:36:1296:28:987:-69.8771,0,-97.678	0/1:87:27,60:27:964:60:2126:-165.418,0,-60.8872	0/0:118:117,1:117:4181:1:36:0,-31.9233,-372.866	0/0:111:111,0:111:3960:0:0:0,-33.4143,-356.59
chr12	20292837	.	G	C	54537	PASS	AB=0.462418;ABP=25.534;AC=144;AF=0.782609;AN=184;AO=2712;CIGAR=1X;DP=3707;DPB=3707;DPRA=0;EPP=5892.04;EPPR=2157.11;GTI=2;LEN=1;MEANALT=1.03261;MQM=44.6818;MQMR=56.5081;NS=92;NUMALT=1;ODDS=0.755186;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97181;QR=35540;RO=992;RPL=0;RPP=5892.04;RPPR=2157.11;RPR=2712;RUN=1;SAF=2712;SAP=5892.04;SAR=0;SRF=992;SRP=2157.11;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:26:16,10:16:576:10:360:-23.0756,0,-44.0316	0/1:75:42,33:42:1512:33:1180:-80.75,0,-112.37	0/1:82:41,41:41:1472:41:1476:-105.768,0,-106.677	1/1:63:0,63:0:0:63:2260:-198.267,-18.9649,0	0/1:40:20,20:20:716:20:720:-50.0154,0,-52.6593	0/1:12:5,7:5:180:7:252:-19.1123,0,-12.9385	1/1:34:0,34:0:0:34:1208:-105.053,-10.235,0	0/1:82:45,37:45:1597:37:1324:-91.5868,0,-118.584	1/1:37:0,37:0:0:37:1325:-116.783,-11.1381,0	1/1:44:0,44:0:0:44:1584:-139.09,-13.2453,0	1/1:35:0,35:0:0:35:1260:-110.04,-10.5361,0	1/1:35:0,35:0:0:35:1256:-107.354,-10.5361,0	1/1:24:0,24:0:0:24:856:-75.2359,-7.22472,0	1/1:55:0,55:0:0:55:1972:-170.762,-16.5567,0	1/1:29:0,29:0:0:29:1044:-92.4603,-8.72987,0	1/1:31:0,31:0:0:31:1116:-99.3396,-9.33193,0	1/1:63:0,63:0:0:63:2260:-199.353,-18.9649,0	1/1:41:0,41:0:0:41:1472:-128.354,-12.3422,0	1/1:25:0,24:0:0:24:841:-73.5238,-7.22472,0	0/1:65:31,34:31:1112:34:1212:-87.1218,0,-80.371	0/1:92:66,26:66:2372:26:928:-53.0923,0,-185.114	0/1:25:13,12:13:464:12:432:-31.1408,0,-34.4984	1/1:29:0,28:0:0:28:1004:-88.5602,-8.42884,0	0/1:45:7,38:7:252:38:1360:-106.988,0,-9.466	1/1:25:0,25:0:0:25:892:-76.995,-7.52575,0	0/1:96:45,51:45:1620:51:1832:-133.872,0,-116.982	1/1:73:0,73:0:0:73:2612:-228.526,-21.9752,0	1/1:11:0,11:0:0:11:396:-35.4354,-3.31133,0	0/1:61:37,24:37:1324:24:860:-57.478,0,-100.479	0/1:56:36,20:36:1296:20:712:-46.1063,0,-100.018	1/1:58:2,56:2:72:56:2012:-170.319,-10.6271,0	.:.:.:.:.:.:.:.	0/1:9:4,5:4:144:5:176:-13.0866,0,-10.4884	.:.:.:.:.:.:.:.	0/1:5:4,1:4:144:1:36:-2.09141,0,-11.8072	0/1:3:1,2:1:36:2:72:-5.86974,0,-2.69474	0/1:90:48,42:48:1724:42:1500:-103.866,0,-128.056	0/1:36:17,19:17:608:19:684:-50.0714,0,-43.6942	1/1:30:0,30:0:0:30:1076:-94.9666,-9.0309,0	1/1:1:0,1:0:0:1:36:-3.53612,-0.30103,0	1/1:50:0,50:0:0:50:1788:-156.969,-15.0515,0	1/1:21:0,21:0:0:21:756:-67.2467,-6.32163,0	1/1:44:0,44:0:0:44:1580:-139.433,-13.2453,0	1/1:48:0,48:0:0:48:1728:-151.007,-14.4494,0	0/1:14:9,5:9:324:5:176:-11.6278,0,-25.286	0/1:29:16,13:16:572:13:468:-32.5503,0,-43.0612	1/1:33:0,33:0:0:33:1176:-104.014,-9.93399,0	1/1:55:0,55:0:0:55:1976:-173.327,-16.5567,0	1/1:24:0,23:0:0:23:828:-72.3066,-6.92369,0	1/1:84:0,84:0:0:84:3015:-262.813,-25.2865,0	0/1:40:21,19:21:752:19:680:-47.4476,0,-55.3704	1/1:8:0,8:0:0:8:288:-25.6782,-2.40824,0	1/1:41:0,41:0:0:41:1475:-127.962,-12.3422,0	1/1:13:1,12:1:36:12:428:-34.0778,-0.315115,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.81221	0/1:44:21,23:21:756:23:820:-59.7556,0,-54.6017	1/1:19:0,19:0:0:19:680:-59.1217,-5.71957,0	0/1:5:2,3:2:72:3:108:-8.053,0,-5.32832	1/1:4:0,4:0:0:4:144:-13.1669,-1.20412,0	1/1:24:0,24:0:0:24:860:-76.4928,-7.22472,0	0/1:56:20,36:20:720:36:1288:-97.0954,0,-48.2493	1/1:2:0,2:0:0:2:68:-6.37409,-0.60206,0	1/1:45:0,45:0:0:45:1612:-141.852,-13.5464,0	0/1:70:44,26:44:1561:26:932:-61.461,0,-119.597	1/1:25:1,24:1:36:24:845:-70.707,-3.93007,0	0/1:43:16,27:16:576:27:964:-71.2898,0,-39.21	0/1:134:75,59:75:2673:59:2113:-144.342,0,-200.212	0/1:29:21,8:21:744:8:288:-17.0838,0,-58.4786	1/1:15:0,15:0:0:15:532:-47.2252,-4.51545,0	0/1:17:7,10:7:252:10:360:-26.6386,0,-17.9086	0/1:61:39,22:39:1400:22:784:-50.3271,0,-106.999	1/1:7:0,7:0:0:7:252:-22.0042,-2.10721,0	0/1:10:3,7:3:108:7:252:-19.741,0,-7.05559	0/1:21:14,7:14:504:7:252:-16.467,0,-39.316	0/1:78:49,29:49:1756:29:1036:-67.9799,0,-134.44	1/1:42:0,42:0:0:42:1508:-132.946,-12.6433,0	0/1:59:26,33:26:928:33:1172:-86.8563,0,-65.9491	0/1:71:39,32:39:1400:32:1148:-78.71,0,-104.905	0/1:8:3,5:3:108:5:180:-13.5233,0,-7.6661	1/1:43:1,42:1:36:42:1508:-129.794,-9.46359,0	0/1:69:41,28:41:1472:28:1000:-67.4008,0,-111.86	1/1:44:0,44:0:0:44:1580:-138.723,-13.2453,0	1/1:64:0,64:0:0:64:2296:-201.755,-19.2659,0	1/1:33:0,33:0:0:33:1188:-105.03,-9.93399,0	1/1:47:0,47:0:0:47:1679:-145.41,-14.1484,0	1/1:78:0,78:0:0:78:2804:-244.337,-23.4803,0	1/1:27:0,27:0:0:27:972:-86.6652,-8.12781,0	1/1:36:0,36:0:0:36:1292:-115.016,-10.8371,0	1/1:27:0,27:0:0:27:972:-85.9627,-8.12781,0	1/1:38:0,38:0:0:38:1360:-118.642,-11.4391,0	0/1:28:12,16:12:417:16:576:-42.5834,0,-28.9863	0/1:46:28,18:28:1008:18:640:-42.1832,0,-76.9789	1/1:37:0,37:0:0:37:1324:-117.014,-11.1381,0	1/1:50:0,50:0:0:50:1796:-156.07,-15.0515,0
chr12	20292880	.	TTC	TTT,TTTATC,TTTATCATC	111484	PASS	AB=0.625551,0.239232,0.221029;ABP=717.846,2896.54,2143.83;AC=111,49,26;AF=0.596774,0.263441,0.139785;AN=186;AO=4276,1181,711;CIGAR=2M1X,1M3I2M,1M6I2M;DP=6258;DPB=8939.67;DPRA=22.9011,1.43857,1.74964;EPP=7297.5,2464.35,383.58;EPPR=16.9077;GTI=10;LEN=1,3,6;MEANALT=2.75824,3.19403,3.31707;MQM=34.6001,43.4479,30.1646;MQMR=31.4;NS=93;NUMALT=3;ODDS=3841.89;PAIRED=0,0,0;PAIREDR=0;PAO=0,0,0;PQA=0,0,0;PQR=0;PRO=0;QA=148552,38487,21253;QR=258;RO=10;RPL=2050,1177,179;RPP=18.7408,2532.89,383.58;RPPR=3.87889;RPR=2226,4,532;RUN=1,1,1;SAF=1807,1165,0;SAP=225.563,2430.43,1546.93;SAR=2469,16,711;SRF=5;SRP=3.0103;SRR=5;TYPE=snp,ins,ins	GT:DP:AD:RO:QR:AO:QA:GL	1/3:52:0,38,2,12:0:0:38,2,12:1297,68,324:-109.139,-22.2749,-10.8357,-104.87,-18.0007,-104.267,-86.8487,0,-82.5797,-83.2363	1/3:94:0,77,0,17:0:0:77,0,17:2625,0,445:-231.66,-30.7512,-7.57193,-231.66,-30.7512,-231.66,-201.158,0,-201.158,-196.04	1/3:121:1,90,2,27:1:21:90,2,27:3014,72,721:-271.651,-47.9593,-22.4422,-266.134,-43.7106,-267.108,-222.37,0,-218.128,-215.818	1/2:100:1,57,40,0:1:23:57,40,0:2020,1334,0:-215.118,-104.802,-89.1398,-109.162,0,-98.6192,-215.419,-106.299,-110.66,-216.917	1/2:46:0,31,6,8:0:0:31,6,8:1029,204,220:-92.479,-16.3449,-7.013,-76.1638,0,-74.3576,-77.0495,-0.944343,-60.7349,-74.6412	1/3:32:0,18,0,14:0:0:18,0,14:618,0,362:-67.2855,-24.993,-19.5745,-67.2855,-24.993,-67.2855,-42.5506,0,-42.5506,-38.3362	1/2:55:0,30,24,0:0:0:30,24,0:1068,774,0:-117.475,-61.4928,-52.4619,-56.008,0,-48.7833,-117.475,-61.4928,-56.008,-117.475	1/3:107:0,86,1,20:0:0:86,1,20:2908,32,536:-252.503,-36.7313,-10.8427,-249.926,-34.1504,-249.625,-215.708,0,-213.131,-209.687	1/1:53:0,53,0,0:0:0:53,0,0:1830,0,0:-126.806,-15.9546,0,-126.806,-15.9546,-126.806,-126.806,-15.9546,-126.806,-126.806	1/2:47:0,15,32,0:0:0:15,32,0:525,1087,0:-119.842,-86.9137,-82.3983,-33.2242,0,-23.5913,-119.842,-86.9137,-33.2242,-119.842	1/2:81:0,58,21,0:0:0:58,21,0:2064,675,0:-160.583,-53.0132,-35.5534,-107.582,0,-101.261,-160.583,-53.0132,-107.582,-160.583	1/1:127:0,127,0,0:0:0:127,0,0:4379,0,0:-249.967,-38.2308,0,-249.967,-38.2308,-249.967,-249.967,-38.2308,-249.967,-249.967	1/1:76:0,76,0,0:0:0:76,0,0:2684,0,0:-150.657,-22.8783,0,-150.657,-22.8783,-150.657,-150.657,-22.8783,-150.657,-150.657	1/2:110:0,79,29,0:0:0:79,29,0:2779,888,0:-207.439,-70.0278,-46.2464,-137.42,0,-128.69,-207.439,-70.0278,-137.42,-207.439	1/2:106:0,85,20,1:0:0:85,20,1:3007,639,30:-211.279,-50.9349,-25.3473,-160.374,0,-154.354,-209.15,-48.8088,-158.246,-208.849	1/2:107:1,87,18,0:1:27:87,18,0:3066,565,0:-189.117,-42.9323,-18.7618,-144.483,0,-141.087,-189.418,-44.9514,-146.505,-191.44	1/1:86:0,86,0,0:0:0:86,0,0:2988,0,0:-222.938,-25.8886,0,-222.938,-25.8886,-222.938,-222.938,-25.8886,-222.938,-222.938	1/1:63:1,62,0,0:1:21:62,0,0:2152,0,0:-153.272,-16.8783,0,-153.573,-18.6639,-155.149,-153.573,-18.6639,-155.149,-155.149	1/1:35:0,35,0,0:0:0:35,0,0:1248,0,0:-86.7284,-10.5361,0,-86.7284,-10.5361,-86.7284,-86.7284,-10.5361,-86.7284,-86.7284	1/3:128:0,63,27,36:0:0:63,27,36:2198,895,1119:-223.056,-80.5275,-61.5626,-151.993,-9.45461,-143.865,-142.511,0,-71.4442,-131.674	1/2:118:0,76,19,22:0:0:76,19,22:2637,617,634:-247.059,-48.8091,-25.9308,-198.277,0,-192.557,-202.588,-4.35537,-153.808,-195.966	1/3:30:0,19,1,10:0:0:19,1,10:619,32,322:-72.3244,-23.4809,-17.7613,-69.7691,-20.9238,-69.4681,-48.8309,0,-46.2759,-45.8206	1/2:47:0,24,22,0:0:0:24,22,0:840,738,0:-104.73,-58.9639,-51.7392,-45.7561,0,-39.1334,-104.73,-58.9639,-45.7561,-104.73	1/2:59:0,31,27,1:0:0:31,27,1:1064,920,29:-135.643,-73.5336,-64.2016,-62.1465,0,-54.0187,-133.606,-71.498,-60.1081,-133.305	1/2:54:0,38,16,0:0:0:38,16,0:1360,509,0:-104.724,-39.8299,-28.3908,-65.1765,0,-60.3601,-104.724,-39.8299,-65.1765,-104.724	1/3:121:0,92,1,27:0:0:92,1,27:3208,36,837:-306.406,-60.7168,-33.0221,-303.524,-57.833,-303.223,-245.645,0,-242.764,-237.518	1/2:116:0,69,44,1:0:0:69,44,1:2391,1410,29:-231.06,-111.654,-90.8828,-119.432,0,-106.187,-229.022,-109.617,-117.394,-228.721	1/2:27:0,22,4,0:0:0:22,4,0:772,132,0:-48.724,-10.4984,-3.87576,-38.2644,0,-37.0603,-48.724,-10.4984,-38.2644,-48.724	1/3:89:0,57,4,28:0:0:57,4,28:1934,136,908:-205.928,-66.3246,-49.1659,-195.002,-55.3951,-193.798,-139.572,0,-128.645,-131.143	1/2:72:0,44,15,12:0:0:44,15,12:1534,507,348:-152.923,-40.5855,-27.3402,-112.371,0,-107.856,-128.474,-16.1556,-87.9236,-124.862	1/2:65:0,22,41,0:0:0:22,41,0:768,1338,0:-152.033,-106.664,-100.041,-45.3943,0,-33.0521,-152.033,-106.664,-45.3943,-152.033	.:.:.:.:.:.:.:.	1/2:10:0,7,3,0:0:0:7,3,0:229,99,0:-25.1951,-8.20968,-6.10247,-17.3042,0,-16.4011,-25.1951,-8.20968,-17.3042,-25.1951	1/1:1:0,1,0,0:0:0:1,0,0:36,0,0:-1.98933,-0.30103,0,-1.98933,-0.30103,-1.98933,-1.98933,-0.30103,-1.98933,-1.98933	1/3:7:0,5,0,2:0:0:5,0,2:180,0,54:-18.7267,-3.95681,-2.45166,-18.7267,-3.95681,-18.7267,-15.0441,0,-15.0441,-14.4421	1/3:4:0,2,0,2:0:0:2,0,2:68,0,54:-9.46489,-3.95681,-3.35475,-9.46489,-3.95681,-9.46489,-5.79643,0,-5.79643,-5.19437	1/3:227:1,151,7,65:1:21:151,7,65:5235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chr12	20321418	.	T	C	159840	PASS	AB=0.468842;ABP=49.0188;AC=147;AF=0.781915;AN=188;AO=7735;CIGAR=1X;DP=10646;DPB=10646;DPRA=0;EPP=16712.6;EPPR=6282.94;GTI=4;LEN=1;MEANALT=1.05319;MQM=59.9856;MQMR=59.7397;NS=94;NUMALT=1;ODDS=0.885607;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=273816;QR=103848;RO=2904;RPL=10;RPP=16712.6;RPPR=6282.94;RPR=7725;RUN=1;SAF=7735;SAP=16799.3;SAR=0;SRF=2904;SRP=6308.97;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:61:27,34:27:968:34:1208:-90.6633,0,-69.0602	0/1:172:87,85:87:3128:85:3014:-219.714,0,-229.54	0/1:248:162,86:162:5816:86:3034:-198.637,0,-448.869	1/1:429:0,429:0:0:429:15230:-1370.43,-129.142,0	0/1:86:36,50:36:1284:50:1780:-134.594,0,-89.9748	0/1:43:17,26:17:608:26:924:-70.5334,0,-42.1077	1/1:85:0,85:0:0:85:3014:-271.492,-25.5876,0	0/1:213:110,103:110:3907:103:3657:-265.215,0,-287.58	1/1:125:0,125:0:0:125:4389:-395.187,-37.6288,0	1/1:117:1,115:1:36:115:4027:-359.083,-31.6211,0	1/1:22:0,22:0:0:22:768:-69.4376,-6.62266,0	1/1:66:0,66:0:0:66:2354:-212.118,-19.868,0	1/1:70:0,70:0:0:70:2504:-225.613,-21.0721,0	1/1:44:0,44:0:0:44:1546:-139.428,-13.2453,0	1/1:59:0,59:0:0:59:2100:-189.27,-17.7608,0	1/1:47:0,47:0:0:47:1654:-149.146,-14.1484,0	1/1:45:1,44:1:32:44:1552:-136.772,-10.347,0	1/1:42:0,42:0:0:42:1491:-134.483,-12.6433,0	1/1:29:0,29:0:0:29:1025:-92.5621,-8.72987,0	0/1:299:177,122:177:6352:122:4331:-299.96,0,-480.776	0/1:209:105,104:105:3772:104:3689:-269.298,0,-276.753	0/1:198:135,63:135:4824:63:2220:-140.459,0,-374.698	1/1:83:1,82:1:36:82:2924:-259.797,-21.3872,0	1/1:132:5,127:5:180:127:4487:-387.45,-23.1839,0	1/1:109:1,108:1:36:108:3846:-342.738,-29.214,0	0/1:373:207,166:207:7387:166:5863:-415.505,0,-552.462	1/1:233:0,233:0:0:233:8228:-740.541,-70.14,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:480:261,219:261:9333:219:7762:-554.125,0,-695.411	0/1:65:30,35:30:1076:35:1238:-92.1559,0,-77.5629	1/1:154:0,154:0:0:154:5469:-492.341,-46.3586,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/1:13:3,10:3:108:10:346:-27.5584,0,-6.16178	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:11:0,11:0:0:11:374:-33.9864,-3.31133,0	0/1:123:59,64:59:2108:64:2266:-167.175,0,-152.963	0/1:285:150,133:150:5329:133:4702:-337.793,0,-394.114	1/1:49:0,49:0:0:49:1743:-157.154,-14.7505,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:272:0,272:0:0:272:9607:-864.597,-81.8802,0	1/1:38:0,38:0:0:38:1338:-120.72,-11.4391,0	1/1:139:0,139:0:0:139:4903:-441.424,-41.8432,0	1/1:41:0,41:0:0:41:1453:-131.065,-12.3422,0	0/1:44:19,25:19:676:25:896:-67.715,0,-47.9211	0/1:125:57,68:57:2048:68:2390:-177.728,0,-146.906	1/1:218:1,217:1:36:217:7675:-687.197,-62.0263,0	1/1:249:0,249:0:0:249:8799:-791.908,-74.9565,0	1/1:193:0,193:0:0:193:6797:-611.807,-58.0988,0	1/1:194:0,194:0:0:194:6917:-622.599,-58.3998,0	0/1:220:102,117:102:3652:117:4147:-307.202,0,-262.645	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	1/1:184:0,184:0:0:184:6536:-588.327,-55.3895,0	1/1:28:0,28:0:0:28:983:-88.7824,-8.42884,0	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5478	0/1:178:114,64:114:4051:64:2284:-152.239,0,-311.175	1/1:54:0,54:0:0:54:1907:-171.907,-16.2556,0	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	1/1:61:0,61:0:0:61:2118:-190.884,-18.3628,0	0/1:63:30,33:30:1072:33:1172:-86.8226,0,-77.823	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:58:0,58:0:0:58:2055:-185.221,-17.4597,0	0/1:232:114,118:114:4083:118:4181:-306.635,0,-297.784	1/1:60:0,60:0:0:60:2136:-192.508,-18.0618,0	0/1:213:103,110:103:3692:110:3893:-286.444,0,-268.27	0/1:223:115,108:115:4107:108:3840:-278.668,0,-302.68	0/1:94:63,31:63:2256:31:1103:-71.283,0,-174.999	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:92:39,51:39:1388:51:1810:-135.802,0,-97.8288	0/1:57:22,35:22:792:35:1243:-95.0152,0,-54.447	1/1:21:0,21:0:0:21:735:-66.4714,-6.32163,0	0/1:141:68,73:68:2415:73:2565:-188.652,0,-175.095	0/1:98:60,38:60:2148:38:1348:-92.1193,0,-164.008	0/1:172:90,82:90:3224:82:2894:-208.92,0,-238.564	1/1:234:1,233:1:36:233:8246:-738.561,-66.8427,0	0/1:133:67,66:67:2389:66:2343:-171.092,0,-175.22	0/1:141:73,68:73:2615:68:2410:-174.711,0,-193.144	0/1:24:16,8:16:572:8:288:-19.0427,0,-44.5887	1/1:142:0,142:0:0:142:5027:-452.582,-42.7463,0	0/1:176:95,81:95:3404:81:2860:-204.658,0,-253.584	1/1:394:0,393:0:0:393:13872:-1247.84,-118.305,0	1/1:83:0,83:0:0:83:2951:-265.824,-24.9855,0	1/1:54:0,54:0:0:54:1914:-172.536,-16.2556,0	1/1:71:0,71:0:0:71:2532:-228.132,-21.3731,0	1/1:125:0,125:0:0:125:4397:-395.906,-37.6288,0	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	1/1:62:0,62:0:0:62:2190:-197.365,-18.6639,0	1/1:55:0,55:0:0:55:1928:-173.794,-16.5567,0	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:46:20,26:20:716:26:928:-69.9909,0,-50.8754	0/1:60:35,25:35:1256:25:879:-61.365,0,-95.2835	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:60:0,60:0:0:60:2144:-193.228,-18.0618,0
chr12	20413797	.	A	C	94848.7	PASS	AB=0.49876;ABP=3.0426;AC=145;AF=0.771277;AN=188;AO=4457;CIGAR=1X;DP=5685;DPB=5685;DPRA=30.875;EPP=9681.26;EPPR=2660.89;GTI=0;LEN=1;MEANALT=1.04348;MQM=59.9859;MQMR=60;NS=94;NUMALT=1;ODDS=2.75472;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159006;QR=43799;RO=1224;RPL=4457;RPP=9681.26;RPPR=2660.89;RPR=0;RUN=1;SAF=0;SAP=9681.26;SAR=4457;SRF=0;SRP=2660.89;SRR=1224;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:39:14,25:14:500:25:900:-69.5808,0,-33.596	0/1:49:36,13:36:1296:13:468:-27.7092,0,-102.193	0/1:48:23,25:23:824:25:896:-66.5109,0,-60.0339	1/1:65:2,63:2:72:63:2222:-193.405,-12.7302,0	0/1:48:24,24:24:860:24:860:-63.2617,0,-63.2724	0/1:54:25,29:25:892:29:1040:-77.6587,0,-64.3441	1/1:93:0,93:0:0:93:3298:-297.038,-27.9958,0	0/1:93:59,34:59:2120:34:1220:-82.111,0,-163.073	1/1:113:1,112:1:36:112:3997:-356.315,-30.4181,0	1/1:64:0,64:0:0:64:2281:-205.55,-19.2659,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:70:0,70:0:0:70:2497:-224.981,-21.0721,0	1/1:96:0,96:0:0:96:3402:-306.394,-28.8989,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:44:0,44:0:0:44:1583:-142.762,-13.2453,0	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0	1/1:51:0,51:0:0:51:1828:-164.801,-15.3525,0	0/1:91:46,45:46:1648:45:1616:-118.336,0,-121.215	0/1:132:41,90:41:1472:90:3192:-247.855,0,-93.1277	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	1/1:196:1,195:1:36:195:6974:-624.123,-55.4036,0	1/1:80:2,78:2:72:78:2796:-245.043,-17.2457,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:161:92,69:92:3304:69:2390:-166.884,0,-249.112	1/1:129:0,129:0:0:129:4632:-417.041,-38.8329,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:112:61,51:61:2188:51:1832:-131.445,0,-163.47	0/1:70:35,35:35:1256:35:1230:-89.9278,0,-92.2732	1/1:121:0,121:0:0:121:4320:-388.975,-36.4246,0	0/1:9:4,5:4:140:5:176:-13.4757,0,-10.2353	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:176:86,90:86:3088:90:3232:-238.118,0,-225.166	0/1:61:28,33:28:1000:33:1188:-88.8658,0,-71.9525	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	1/1:37:0,36:0:0:36:1292:-116.224,-10.8371,0	1/1:90:0,90:0:0:90:3216:-289.663,-27.0927,0	1/1:85:0,84:0:0:84:2989:-268.882,-25.2865,0	0/1:46:23,23:23:824:23:809:-59.2809,0,-60.6359	0/1:76:40,36:40:1440:36:1292:-93.7055,0,-107.019	1/1:47:0,47:0:0:47:1653:-149.056,-14.1484,0	1/1:86:0,86:0:0:86:3081:-277.516,-25.8886,0	1/1:53:0,52:0:0:52:1819:-163.626,-15.6536,0	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:90:43,47:43:1540:47:1665:-123.043,0,-111.8	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	1/1:15:0,15:0:0:15:536:-48.5748,-4.51545,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:59:28,31:28:1004:31:1112:-82.6306,0,-72.9151	1/1:17:0,17:0:0:17:600:-54.3292,-5.11751,0	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:46:0,46:0:0:46:1636:-147.529,-13.8474,0	0/1:91:47,44:47:1684:44:1572:-114.378,0,-124.453	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	0/1:111:72,39:72:2576:39:1385:-91.5325,0,-198.675	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:29:17,12:17:608:12:420:-29.4042,0,-46.3222	0/1:103:42,61:42:1512:61:2161:-163.743,0,-105.369	0/1:29:23,6:23:828:6:216:-11.0606,0,-66.1142	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:36:13,23:13:464:23:828:-64.007,0,-31.2604	0/1:53:25,28:25:892:28:993:-73.7279,0,-64.6451	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:39:16,23:16:568:23:813:-61.7489,0,-39.7117	0/1:32:19,13:19:665:13:468:-32.8267,0,-50.5398	0/1:80:37,43:37:1316:43:1529:-113.819,0,-94.6594	1/1:75:1,74:1:36:74:2649:-235.056,-18.979,0	0/1:103:32,71:32:1132:71:2533:-197.214,0,-71.1825	0/1:57:31,26:31:1108:26:921:-66.0465,0,-82.8723	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	1/1:58:1,57:1:36:57:2026:-179.012,-13.8615,0	0/1:65:30,35:30:1053:35:1256:-93.7783,0,-75.5116	1/1:110:0,110:0:0:110:3911:-352.179,-33.1133,0	1/1:76:0,76:0:0:76:2683:-241.711,-22.8783,0	1/1:41:0,41:0:0:41:1461:-131.784,-12.3422,0	1/1:113:0,113:0:0:113:4053:-364.956,-34.0164,0	1/1:174:0,174:0:0:174:6211:-559.079,-52.3792,0	1/1:35:0,35:0:0:35:1241:-111.993,-10.5361,0	1/1:63:0,63:0:0:63:2256:-203.301,-18.9649,0	1/1:41:0,41:0:0:41:1453:-131.064,-12.3422,0	1/1:26:0,26:0:0:26:913:-82.484,-7.82678,0	0/1:53:27,26:27:960:26:936:-68.6049,0,-70.7617	0/1:60:39,21:39:1381:21:752:-49.9445,0,-106.525	1/1:93:0,93:0:0:93:3314:-298.476,-27.9958,0	1/1:91:0,91:0:0:91:3254:-293.058,-27.3937,0
chr12	20421050	.	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chr12	20467212	.	CTAA	TTAT,TTAA	197219	PASS	AB=0.520508,0.47768;ABP=19.1308,22.1068;AC=148,40;AF=0.787234,0.212766;AN=188;AO=7144,2133;CIGAR=1X2M1X,1X3M;DP=9293;DPB=9296.75;DPRA=0,1.44987;EPP=15516,4634.76;EPPR=11.6962;GTI=2;LEN=4,1;MEANALT=1.6383,2.08;MQM=58.9497,59.767;MQMR=60;NS=94;NUMALT=2;ODDS=0.615447;PAIRED=0,0;PAIREDR=0;PAO=9,3;PQA=316,0;PQR=0;PRO=3;QA=252499,75966;QR=143;RO=4;RPL=0,0;RPP=15516,4634.76;RPPR=11.6962;RPR=7144,2133;RUN=1,1;SAF=0,0;SAP=15516,4634.76;SAR=7144,2133;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:35:0,14,21:0:0:14,21:501,748:-102.137,-61.317,-57.1025,-41.1765,0,-34.8548	1/2:146:0,77,69:0:0:77,69:2718,2445:-420.83,-199.533,-176.354,-221.65,0,-200.879	1/2:109:0,37,72:0:0:37,72:1302,2553:-314.15,-208.233,-197.095,-106.27,0,-84.5958	1/1:201:0,200,1:0:0:200,1:7022,36:-631.429,-60.206,0,-628.491,-57.2486,-628.19	1/2:40:0,21,19:0:0:21,19:751,665:-115.686,-54.445,-48.1234,-61.5947,0,-55.8752	1/2:69:0,35,34:0:0:35,34:1245,1178:-197.547,-96.0786,-85.5425,-101.819,0,-91.5844	1/1:145:0,145,0:0:0:145,0:5148,0:-463.098,-43.6494,0,-463.098,-43.6494,-463.098	1/2:209:2,95,112:2:72:95,112:3333,3987:-589.202,-318.683,-295.96,-265.239,0,-237.399	1/1:101:0,101,0:0:0:101,0:3548,0:-318.987,-30.404,0,-318.987,-30.404,-318.987	1/1:109:0,109,0:0:0:109,0:3830,0:-344.726,-32.8123,0,-344.726,-32.8123,-344.726	1/1:77:0,77,0:0:0:77,0:2704,0:-243.4,-23.1793,0,-243.4,-23.1793,-243.4	1/1:63:0,63,0:0:0:63,0:2235,0:-201.343,-18.9649,0,-201.343,-18.9649,-201.343	1/1:61:0,61,0:0:0:61,0:2172,0:-195.72,-18.3628,0,-195.72,-18.3628,-195.72	1/1:80:0,79,1:0:0:79,1:2823,36:-253.795,-23.7814,0,-250.858,-20.4841,-250.557	1/1:92:0,92,0:0:0:92,0:3282,0:-295.432,-27.6948,0,-295.432,-27.6948,-295.432	1/1:50:0,49,1:0:0:49,1:1760,36:-158.235,-14.7505,0,-155.299,-11.4549,-154.998	1/1:83:0,83,0:0:0:83,0:2947,0:-265.389,-24.9855,0,-265.389,-24.9855,-265.389	1/1:68:0,68,0:0:0:68,0:2413,0:-217.345,-20.47,0,-217.345,-20.47,-217.345	1/1:37:0,37,0:0:0:37,0:1318,0:-118.899,-11.1381,0,-118.899,-11.1381,-118.899	1/2:201:0,110,91:0:0:110,91:3871,3248:-580.107,-265.135,-232.022,-315.326,0,-287.933	1/2:139:0,57,82:0:0:57,82:2012,2944:-404.344,-240.504,-223.346,-164.195,0,-139.51	1/2:88:0,23,65:0:0:23,65:819,2315:-255.638,-188.908,-181.984,-67.0854,0,-47.5184	1/1:82:0,82,0:0:0:82,0:2895,0:-260.758,-24.6845,0,-260.758,-24.6845,-260.758	1/1:183:0,173,10:0:0:173,10:6164,360:-553.878,-52.0782,0,-524.504,-22.3442,-521.494	1/1:59:0,59,0:0:0:59,0:2085,0:-187.271,-17.7608,0,-187.271,-17.7608,-187.271	1/2:279:0,168,111:0:0:168,111:5924,3957:-805.033,-322.895,-272.322,-482.493,0,-449.079	1/1:223:0,223,0:0:0:223,0:7911,0:-711.721,-67.1297,0,-711.721,-67.1297,-711.721	1/1:34:0,34,0:0:0:34,0:1220,0:-110.017,-10.235,0,-110.017,-10.235,-110.017	1/2:251:0,145,104:0:0:145,104:5076,3682:-712.816,-299.915,-256.265,-412.894,0,-381.587	1/2:160:0,95,65:0:0:95,65:3348,2301:-460.137,-187.772,-159.174,-272.718,0,-253.152	1/1:124:0,119,4:0:0:119,4:4207,144:-378.151,-35.8226,0,-366.401,-23.993,-365.197	1/1:8:0,7,0:0:0:7,0:241,0:-21.7174,-2.10721,0,-21.7174,-2.10721,-21.7174	1/2:12:0,7,5:0:0:7,5:242,180:-34.7027,-15.0469,-12.9397,-20.0096,0,-18.5045	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:6:0,4,2:0:0:4,2:138,68:-17.0378,-5.82247,-4.61835,-11.5557,0,-10.9536	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57002	1/2:256:0,121,135:0:0:121,135:4280,4835:-743.003,-394.635,-358.211,-348.724,0,-308.085	1/2:223:0,117,105:0:0:117,105:4117,3755:-640.558,-306.176,-270.956,-334.377,0,-302.769	1/1:69:0,69,0:0:0:69,0:2446,0:-220.365,-20.7711,0,-220.365,-20.7711,-220.365	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:147:0,147,0:0:0:147,0:5217,0:-469.472,-44.2514,0,-469.472,-44.2514,-469.472	1/1:40:0,40,0:0:0:40,0:1418,0:-127.521,-12.0412,0,-127.521,-12.0412,-127.521	1/1:97:0,97,0:0:0:97,0:3403,0:-305.452,-29.1999,0,-305.452,-29.1999,-305.452	1/1:84:0,84,0:0:0:84,0:2978,0:-267.77,-25.2865,0,-267.77,-25.2865,-267.77	1/2:65:0,27,38:0:0:27,38:951,1352:-187.77,-110.536,-102.408,-77.5875,0,-66.1483	1/2:117:0,68,48:0:0:68,48:2402,1709:-334.39,-139.343,-118.873,-195.099,0,-180.65	1/1:96:0,96,0:0:0:96,0:3397,0:-305.36,-28.8989,0,-305.36,-28.8989,-305.36	1/1:187:0,187,0:0:0:187,0:6566,0:-590.172,-56.2926,0,-590.172,-56.2926,-590.172	1/1:137:0,135,2:0:0:135,2:4760,72:-427.966,-40.6391,0,-422.091,-34.4044,-421.489	1/1:187:0,186,1:0:0:186,1:6588,36:-592.363,-55.9916,0,-589.426,-52.6943,-589.125	1/2:147:0,87,60:0:0:87,60:3094,2143:-427.124,-175.069,-148.879,-252.411,0,-234.35	1/1:5:0,5,0:0:0:5,0:179,0:-16.4588,-1.50515,0,-16.4588,-1.50515,-16.4588	1/1:127:0,126,0:0:0:126,0:4474,0:-402.18,-37.9298,0,-402.18,-37.9298,-402.18	1/1:39:0,39,0:0:0:39,0:1359,0:-122.247,-11.7402,0,-122.247,-11.7402,-122.247	1/2:15:0,13,2:0:0:13,2:447,63:-41.6621,-5.38109,-1.4677,-36.5997,0,-35.9976	1/2:101:0,54,47:0:0:54,47:1918,1665:-292.271,-135.984,-119.728,-156.641,0,-142.493	1/1:24:0,24,0:0:0:24,0:841,0:-75.7396,-7.22472,0,-75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chr12	20475248	.	T	C	399291	PASS	AB=0.634961;ABP=1325.31;AC=149;AF=0.792553;AN=188;AO=15856;CIGAR=1X;DP=18930;DPB=18930;DPRA=0;EPP=34433.9;EPPR=6667.26;GTI=3;LEN=1;MEANALT=1.04255;MQM=46.8792;MQMR=59.9225;NS=94;NUMALT=1;ODDS=5.48451;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=563809;QR=109517;RO=3069;RPL=8165;RPP=33.7796;RPPR=30.4696;RPR=7691;RUN=1;SAF=8165;SAP=33.7796;SAR=7691;SRF=1633;SRP=30.4696;SRR=1436;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:92:26,66:26:932:66:2338:-168.094,0,-56.5041	0/1:130:32,97:32:1152:97:3435:-246.444,0,-64.7893	0/1:315:92,223:92:3288:223:7934:-589.5,0,-201.316	1/1:597:0,596:0:0:596:21180:-1772.15,-179.414,0	0/1:105:27,78:27:964:78:2795:-206.98,0,-55.4687	0/1:77:20,57:20:720:57:2014:-139.811,0,-41.9495	1/1:209:0,209:0:0:209:7436:-606.084,-62.9153,0	0/1:241:90,151:90:3209:151:5352:-370.013,0,-216.484	1/1:200:0,200:0:0:200:7110:-575.185,-60.206,0	1/1:166:0,166:0:0:166:5891:-477.368,-49.971,0	1/1:146:0,146:0:0:146:5222:-423.429,-43.9504,0	1/1:238:0,238:0:0:238:8488:-708.41,-71.6451,0	1/1:122:0,122:0:0:122:4351:-359.295,-36.7257,0	1/1:150:0,150:0:0:150:5358:-448.741,-45.1545,0	1/1:100:0,100:0:0:100:3583:-299.555,-30.103,0	1/1:123:0,123:0:0:123:4372:-372.495,-37.0267,0	1/1:94:0,94:0:0:94:3348:-273.097,-28.2968,0	1/1:57:0,57:0:0:57:2035:-172.277,-17.1587,0	1/1:53:0,53:0:0:53:1888:-154.244,-15.9546,0	0/1:467:162,305:162:5828:305:10884:-756.89,0,-384.046	0/1:359:105,254:105:3752:254:9063:-658.32,0,-229.8	0/1:233:114,119:114:4056:119:4214:-299.006,0,-295.086	1/1:320:0,320:0:0:320:11380:-917.575,-96.3296,0	1/1:113:4,109:4:144:109:3873:-316.274,-20.7028,0	1/1:208:0,208:0:0:208:7396:-610.649,-62.6142,0	0/1:478:117,361:117:4168:361:12789:-975.774,0,-231.41	1/1:570:0,570:0:0:570:20240:-1735.69,-171.587,0	1/1:64:0,64:0:0:64:2288:-197.042,-19.2659,0	0/1:673:212,459:212:7534:459:16243:-1231,0,-475.771	0/1:284:87,197:87:3124:197:6987:-503.768,0,-195.665	1/1:210:2,208:2:72:208:7412:-576.5,-56.3796,0	0/1:24:5,19:5:180:19:672:-51.9189,0,-9.32577	0/1:16:6,10:6:216:10:356:-26.1232,0,-14.974	1/1:20:0,20:0:0:20:693:-57.996,-6.0206,0	0/1:25:8,17:8:288:17:604:-40.5167,0,-18.7417	1/1:14:1,13:1:36:13:464:-36.2154,-0.616145,0	0/1:385:205,180:205:7303:180:6374:-435.986,0,-541.425	0/1:218:63,155:63:2242:155:5517:-404.157,0,-136.418	1/1:83:0,83:0:0:83:2976:-248.546,-24.9855,0	1/1:1:0,1:0:0:1:36:-3.24616,-0.30103,0	1/1:255:0,255:0:0:255:9072:-769.16,-76.7627,0	1/1:47:0,47:0:0:47:1680:-138.824,-14.1484,0	1/1:512:0,512:0:0:512:18169:-1563.46,-154.127,0	1/1:123:0,123:0:0:123:4389:-364.282,-37.0267,0	0/1:145:75,70:75:2666:70:2479:-162.656,0,-196.532	0/1:216:91,125:91:3251:125:4488:-323.602,0,-226.676	1/1:299:0,299:0:0:299:10655:-906.311,-90.008,0	1/1:594:0,594:0:0:594:20987:-1752.45,-178.812,0	1/1:215:0,215:0:0:215:7614:-621.986,-64.7215,0	1/1:374:0,374:0:0:374:13356:-1114.39,-112.585,0	0/1:146:59,87:59:2104:87:3103:-227.312,0,-145.452	1/1:31:0,31:0:0:31:1107:-93.6699,-9.33193,0	1/1:301:2,299:2:72:299:10689:-891.454,-83.7733,0	1/1:109:0,109:0:0:109:3859:-331.102,-32.8123,0	0/1:21:4,17:4:144:17:608:-45.2907,0,-6.99199	0/1:253:69,184:69:2465:184:6489:-484.221,0,-145.942	1/1:99:0,99:0:0:99:3536:-285.438,-29.802,0	0/1:26:3,23:3:108:23:828:-65.7536,0,-2.24839	1/1:39:0,39:0:0:39:1387:-120.332,-11.7402,0	1/1:244:1,243:1:36:243:8695:-719.265,-69.853,0	0/1:223:110,113:110:3893:113:4003:-256.603,0,-283.433	1/1:23:0,23:0:0:23:824:-70.5741,-6.92369,0	1/1:494:0,494:0:0:494:17593:-1544.38,-148.709,0	0/1:376:120,256:120:4268:256:9067:-639.914,0,-271.109	1/1:145:9,136:9:309:136:4846:-372.829,-15.5086,0	0/1:171:54,117:54:1900:117:4148:-295.476,0,-119.799	0/1:356:130,226:130:4613:226:8017:-559.233,0,-308.166	0/1:215:120,95:120:4284:95:3382:-207.047,0,-321.014	1/1:83:0,83:0:0:83:2945:-245.111,-24.9855,0	0/1:85:30,55:30:1080:55:1945:-138.197,0,-71.9142	0/1:71:38,33:38:1351:33:1180:-82.6982,0,-100.493	1/1:41:0,41:0:0:41:1460:-115.283,-12.3422,0	0/1:242:80,162:80:2868:162:5772:-404.281,0,-185.507	0/1:200:75,125:75:2696:125:4410:-308.249,0,-182.646	0/1:304:97,207:97:3442:207:7359:-515.172,0,-218.456	1/1:365:0,364:0:0:364:12979:-1092.14,-109.575,0	0/1:275:97,178:97:3480:178:6357:-459.595,0,-230.628	0/1:264:109,155:109:3904:155:5540:-378.145,0,-272.082	0/1:22:9,13:9:324:13:464:-32.2293,0,-22.8832	1/1:285:0,285:0:0:285:10100:-869.628,-85.7936,0	0/1:265:104,161:104:3744:161:5717:-409.247,0,-257.382	1/1:481:0,481:0:0:481:17126:-1428.34,-144.795,0	1/1:104:1,103:1:36:103:3637:-303.399,-27.7088,0	1/1:132:0,132:0:0:132:4707:-387.494,-39.736,0	1/1:110:0,110:0:0:110:3924:-325.639,-33.1133,0	1/1:251:0,251:0:0:251:8919:-731.62,-75.5585,0	1/1:31:0,31:0:0:31:1116:-95.9069,-9.33193,0	1/1:143:0,143:0:0:143:5087:-427.365,-43.0473,0	1/1:129:0,129:0:0:129:4604:-384.551,-38.8329,0	1/1:67:0,67:0:0:67:2378:-200.311,-20.169,0	0/1:202:94,108:94:3369:108:3806:-261.52,0,-242.615	0/1:158:109,49:109:3866:49:1740:-94.5211,0,-300.569	1/1:420:1,419:1:36:419:14878:-1250.13,-122.835,0	1/1:168:0,168:0:0:168:5998:-491.031,-50.573,0
chr12	20475269	.	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chr12	20478113	.	C	T	285014	PASS	AB=0.388093;ABP=830.678;AC=147;AF=0.781915;AN=188;AO=10631;CIGAR=1X;DP=15314;DPB=15314;DPRA=0;EPP=22992.5;EPPR=10128.6;GTI=5;LEN=1;MEANALT=1.07447;MQM=59.832;MQMR=59.9482;NS=94;NUMALT=1;ODDS=0.783841;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=379702;QR=166635;RO=4675;RPL=5464;RPP=21.0277;RPPR=42.3434;RPR=5167;RUN=1;SAF=5453;SAP=18.4574;SAR=5178;SRF=2191;SRP=42.886;SRR=2484;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:134:49,85:49:1760:85:3029:-232.371,0,-118.338	0/1:225:132,93:132:4728:93:3331:-232.213,0,-357.947	0/1:284:165,119:165:5871:119:4230:-295.292,0,-443.01	1/1:232:1,231:1:27:231:8210:-736.102,-67.1392,0	0/1:171:120,51:120:4286:51:1813:-111.964,0,-334.41	0/1:136:76,58:76:2713:58:2080:-146.771,0,-203.734	1/1:169:1,168:1:36:168:6006:-537.035,-47.2758,0	0/1:324:210,114:210:7504:114:4056:-267.673,0,-577.816	1/1:205:0,205:0:0:205:7299:-656.792,-61.7112,0	1/1:141:0,141:0:0:141:5027:-452.573,-42.4452,0	1/1:125:0,125:0:0:125:4464:-401.926,-37.6288,0	1/1:220:0,220:0:0:220:7895:-710.532,-66.2266,0	1/1:137:0,137:0:0:137:4903:-441.387,-41.2411,0	1/1:99:0,99:0:0:99:3543:-319.067,-29.802,0	1/1:161:0,161:0:0:161:5762:-518.675,-48.4658,0	1/1:116:0,116:0:0:116:4150:-373.655,-34.9195,0	1/1:113:0,113:0:0:113:4057:-365.312,-34.0164,0	1/1:87:0,87:0:0:87:3120:-280.656,-26.1896,0	1/1:75:0,75:0:0:75:2692:-242.508,-22.5773,0	0/1:323:207,116:207:7394:116:4164:-277.706,0,-568.275	0/1:351:199,152:199:7089:152:5412:-381.536,0,-532.406	0/1:126:98,28:98:3488:28:995:-51.9333,0,-276.2	1/1:123:2,121:2:72:121:4336:-383.576,-30.19,0	1/1:129:5,124:5:176:124:4416:-381.426,-22.6479,0	1/1:143:0,143:0:0:143:5098:-458.948,-43.0473,0	0/1:415:262,153:262:9330:153:5488:-369.107,0,-714.722	1/1:396:0,395:0:0:395:14097:-1268.07,-118.907,0	1/1:88:0,88:0:0:88:3160:-284.601,-26.4906,0	0/1:327:199,128:199:7090:128:4552:-311.404,0,-539.71	0/1:174:120,54:120:4250:54:1944:-122.852,0,-330.301	1/1:125:1,124:1:36:124:4402:-392.745,-34.0305,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:30:20,10:20:702:10:360:-23.7134,0,-54.4716	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:22:17,5:17:612:5:180:-9.9294,0,-48.7908	0/1:478:259,219:259:9256:219:7799:-558.04,0,-689.119	0/1:166:113,53:113:4043:53:1908:-121.989,0,-314.086	1/1:105:0,105:0:0:105:3752:-337.861,-31.6082,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:227:0,226:0:0:226:8072:-726.112,-68.0328,0	1/1:69:0,69:0:0:69:2472:-222.734,-20.7711,0	1/1:265:1,263:1:36:263:9353:-838.138,-76.2335,0	1/1:153:0,153:0:0:153:5475:-492.837,-46.0576,0	0/1:139:68,71:68:2440:71:2548:-187.722,0,-178.012	0/1:180:109,71:109:3907:71:2539:-174.575,0,-297.637	1/1:172:0,171:0:0:171:6124:-550.894,-51.4761,0	1/1:244:0,244:0:0:244:8744:-786.851,-73.4513,0	1/1:118:0,118:0:0:118:4195:-377.728,-35.5215,0	1/1:178:0,178:0:0:178:6327:-569.515,-53.5833,0	0/1:203:129,74:129:4575:74:2630:-175.833,0,-350.805	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:184:1,183:1:36:183:6519:-583.129,-51.7912,0	1/1:50:0,50:0:0:50:1784:-160.842,-15.0515,0	0/1:22:19,3:19:680:3:108:-3.45251,0,-54.9065	0/1:201:119,82:119:4251:82:2939:-204.232,0,-322.259	1/1:62:1,61:1:36:61:2175:-192.411,-15.0656,0	0/1:26:13,13:13:464:13:468:-34.6296,0,-34.2707	1/1:15:0,15:0:0:15:529:-47.9406,-4.51545,0	1/1:169:0,169:0:0:169:6052:-544.766,-50.8741,0	0/1:196:108,88:108:3865:88:3164:-225.979,0,-289.042	1/1:6:0,6:0:0:6:216:-19.7881,-1.80618,0	1/1:142:1,141:1:36:141:5057:-451.673,-39.148,0	0/1:278:154,124:154:5489:124:4419:-314.188,0,-410.451	1/1:89:4,85:4:144:85:3026:-259.246,-13.4781,0	0/1:143:90,53:90:3219:53:1900:-128.144,0,-246.885	0/1:289:177,111:177:6329:111:3977:-271.031,0,-482.643	0/1:217:158,59:158:5660:59:2108:-124.666,0,-444.191	1/1:74:1,73:1:36:73:2598:-230.47,-18.6779,0	0/1:185:110,75:110:3913:75:2675:-185.24,0,-296.673	0/1:156:77,79:77:2729:79:2828:-207.795,0,-198.891	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:205:144,61:144:5139:61:2173:-134.124,0,-400.937	0/1:150:93,57:93:3321:57:2009:-135.927,0,-253.951	0/1:320:224,96:224:7903:96:3417:-211.414,0,-614.72	1/1:220:0,220:0:0:220:7856:-707.054,-66.2266,0	0/1:215:128,87:128:4566:87:3111:-215.434,0,-346.385	0/1:187:109,78:109:3887:78:2777:-193.235,0,-293.724	0/1:42:26,16:26:927:16:548:-36.9989,0,-71.1041	1/1:216:0,216:0:0:216:7729:-695.628,-65.0225,0	0/1:194:120,73:120:4256:73:2607:-176.41,0,-324.756	1/1:399:1,398:1:36:398:14239:-1277.54,-116.513,0	1/1:181:1,180:1:36:180:6454:-577.902,-51.5057,0	1/1:120:0,120:0:0:120:4288:-386.082,-36.1236,0	1/1:162:0,162:0:0:162:5805:-522.476,-48.7669,0	1/1:264:2,262:2:72:262:9374:-836.767,-72.6352,0	1/1:81:0,81:0:0:81:2877:-259.166,-24.3834,0	1/1:154:0,154:0:0:154:5526:-497.431,-46.3586,0	1/1:139:0,139:0:0:139:4948:-445.445,-41.8432,0	1/1:77:0,77:0:0:77:2734:-246.298,-23.1793,0	0/1:168:84,84:84:2967:84:3007:-220.278,0,-216.687	0/1:183:132,51:132:4677:51:1808:-107.911,0,-366.006	1/1:168:0,168:0:0:168:6001:-540.173,-50.573,0	1/1:266:0,266:0:0:266:9479:-852.879,-80.074,0
chr12	20514756	.	TAATG	AAATT,AAATG	77534.3	PASS	AB=0.454649,0.541345;ABP=65.4449,54.9026;AC=146,40;AF=0.784946,0.215054;AN=186;AO=4631,1902;CIGAR=1X3M1X,1X4M;DP=6555;DPB=6555.6;DPRA=0,1.79352;EPP=10033.1,4133.15;EPPR=0;GTI=6;LEN=5,1;MEANALT=1.70968,2.28261;MQM=25.8517,28.2813;MQMR=0;NS=93;NUMALT=2;ODDS=0.872276;PAIRED=0,0;PAIREDR=0;PAO=1.5,1.5;PQA=34,34;PQR=0;PRO=0;QA=164294,53732;QR=0;RO=0;RPL=4628,1902;RPP=10033.1,4133.15;RPPR=0;RPR=3,0;RUN=1,1;SAF=4631,1902;SAP=10059.1,4133.15;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/2:45:0,18,27:0:0:18,27:645,601:-65.4119,-38.8734,-33.4549,-26.7339,0,-18.6061	1/2:81:0,39,42:0:0:39,42:1389,943:-118.146,-61.0923,-49.3521,-57.249,0,-44.6057	1/2:122:0,55,67:0:0:55,67:1954,1497:-180.958,-96.6826,-80.1259,-84.475,0,-64.306	1/1:145:0,145,0:0:0:145,0:5138,0:-383.432,-43.6494,0,-383.432,-43.6494,-383.432	1/2:76:0,29,45:0:0:29,45:1037,982:-105.474,-62.7336,-54.0037,-42.7365,0,-29.1901	1/2:52:0,34,18:0:0:34,18:1210,394:-76.7073,-25.3767,-15.1416,-51.5238,0,-46.1053	1/1:131:0,130,1:0:0:130,1:4593,33:-337.358,-39.1339,0,-334.959,-36.4359,-334.658	1/2:89:0,33,56:0:0:33,56:1167,1245:-130.002,-80.225,-70.291,-49.9202,0,-33.0625	1/1:64:0,64,0:0:0:64,0:2259,0:-115.581,-19.2659,0,-115.581,-19.2659,-115.581	1/1:70:0,70,0:0:0:70,0:2474,0:-182.868,-21.0721,0,-182.868,-21.0721,-182.868	1/1:11:0,11,0:0:0:11,0:394,0:-27.9307,-3.31133,0,-27.9307,-3.31133,-27.9307	1/1:37:0,37,0:0:0:37,0:1325,0:-66.2492,-11.1381,0,-66.2492,-11.1381,-66.2492	1/1:26:0,25,0:0:0:25,0:893,0:-43.8433,-7.52575,0,-43.8433,-7.52575,-43.8433	1/1:19:0,19,0:0:0:19,0:684,0:-34.2165,-5.71957,0,-34.2165,-5.71957,-34.2165	1/1:32:0,32,0:0:0:32,0:1152,0:-85.8524,-9.63296,0,-85.8524,-9.63296,-85.8524	1/1:13:0,13,0:0:0:13,0:462,0:-24.2806,-3.91339,0,-24.2806,-3.91339,-24.2806	1/1:24:0,24,0:0:0:24,0:859,0:-42.1571,-7.22472,0,-42.1571,-7.22472,-42.1571	1/1:20:0,20,0:0:0:20,0:720,0:-35.8299,-6.0206,0,-35.8299,-6.0206,-35.8299	1/1:3:0,3,0:0:0:3,0:105,0:-5.56046,-0.90309,0,-5.56046,-0.90309,-5.56046	1/2:133:0,59,74:0:0:59,74:2096,2438:-312.286,-177.524,-159.763,-135.054,0,-112.778	1/2:92:0,48,44:0:0:48,44:1698,974:-133.12,-62.7391,-48.2897,-70.5747,0,-57.3294	1/2:325:0,93,230:0:0:93,230:3280,7518:-762.035,-545.846,-517.85,-216.23,0,-146.993	1/1:98:0,98,0:0:0:98,0:3423,0:-253.51,-29.5009,0,-253.51,-29.5009,-253.51	1/1:154:0,149,5:0:0:149,5:5307,110:-262.635,-44.8535,0,-255.588,-37.617,-254.083	1/1:82:0,81,0:0:0:81,0:2874,0:-145.179,-24.3834,0,-145.179,-24.3834,-145.179	1/2:259:0,119,139:0:0:119,139:4211,4563:-610.402,-331.431,-295.608,-278.969,0,-237.126	1/1:142:0,142,0:0:0:142,0:5052,0:-253.124,-42.7463,0,-253.124,-42.7463,-253.124	1/1:10:0,10,0:0:0:10,0:345,0:-17.9184,-3.0103,0,-17.9184,-3.0103,-17.9184	1/2:246:0,109,137:0:0:109,137:3876,4502:-583.904,-327.135,-294.322,-257.066,0,-215.825	1/2:99:0,48,50:0:0:48,50:1681,1101:-141.144,-70.5763,-56.1269,-70.5899,0,-55.5384	1/1:87:0,86,1:0:0:86,1:3030,33:-223.832,-25.8886,0,-221.434,-23.1905,-221.133	1/2:6:0,4,2:0:0:4,2:138,44:-8.94915,-3.00859,-1.80447,-6.13335,0,-5.53129	1/2:15:0,11,4:0:0:11,4:377,88:-22.3893,-5.82715,-2.51582,-16.755,0,-15.5509	.:.:.:.:.:.:.:.	1/2:3:0,1,2:0:0:1,2:36,44:-4.50093,-3.00859,-2.70756,-1.6883,0,-1.08624	1/1:3:0,3,0:0:0:3,0:106,0:-5.56442,-0.90309,0,-5.56442,-0.90309,-5.56442	1/2:66:0,29,36:0:0:29,36:1028,1181:-153.932,-85.7634,-77.0335,-68.1838,0,-57.3467	1/2:162:0,74,86:0:0:74,86:2636,1884:-230.362,-120.477,-98.2006,-109.886,0,-83.9976	1/1:12:0,12,0:0:0:12,0:426,0:-22.4515,-3.61236,0,-22.4515,-3.61236,-22.4515	1/2:5:0,3,2:0:0:3,2:108,44:-7.39206,-3.00859,-2.1055,-4.57576,0,-3.9737	1/1:85:0,83,0:0:0:83,0:2940,0:-148.273,-24.9855,0,-148.273,-24.9855,-148.273	1/1:11:0,11,0:0:0:11,0:389,0:-18.5227,-3.31133,0,-18.5227,-3.31133,-18.5227	1/1:134:0,134,0:0:0:134,0:4740,0:-241.815,-40.338,0,-241.815,-40.338,-241.815	1/1:19:0,19,0:0:0:19,0:673,0:-50.9164,-5.71957,0,-50.9164,-5.71957,-50.9164	1/2:11:0,6,5:0:0:6,5:211,162:-26.1418,-12.0147,-10.2085,-14.4215,0,-12.9163	1/2:112:0,47,63:0:0:47,63:1660,2070:-259.758,-150.408,-136.259,-109.436,0,-90.4714	1/1:109:0,108,0:0:0:108,0:3820,0:-195.313,-32.5112,0,-195.313,-32.5112,-195.313	1/1:163:0,161,1:0:0:161,1:5699,33:-425.505,-48.4658,0,-423.107,-46.0752,-422.806	1/1:116:0,116,0:0:0:116,0:4124,0:-305.535,-34.9195,0,-305.535,-34.9195,-305.535	1/1:59:0,59,0:0:0:59,0:2088,0:-155.228,-17.7608,0,-155.228,-17.7608,-155.228	1/2:211:0,102,109:0:0:102,109:3600,3565:-494.72,-259.071,-228.366,-235.942,0,-203.13	1/1:7:0,7,0:0:0:7,0:251,0:-19.0529,-2.10721,0,-19.0529,-2.10721,-19.0529	1/1:110:0,109,1:0:0:109,1:3867,22:-194.226,-32.8123,0,-192.817,-31.213,-192.516	1/1:28:0,28,0:0:0:28,0:993,0:-73.4122,-8.42884,0,-73.4122,-8.42884,-73.4122	1/2:4:0,2,2:0:0:2,2:66,44:-5.87881,-3.00859,-2.40653,-3.06165,0,-2.45959	1/2:77:0,40,37:0:0:40,37:1416,812:-110.904,-52.1535,-40.1123,-58.9437,0,-47.8056	1/1:47:0,47,0:0:0:47,0:1676,0:-122.07,-14.1484,0,-122.07,-14.1484,-122.07	1/2:9:0,3,6:0:0:3,6:106,197:-21.7329,-14.6403,-13.7372,-7.38975,0,-5.5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chr12	20524405	.	G	A	41205.2	PASS	AB=0.558817;ABP=148.356;AC=39;AF=0.209677;AN=186;AO=2720;CIGAR=1X;DP=9861;DPB=9861;DPRA=1.5062;EPP=5909.42;EPPR=15500.8;GTI=4;LEN=1;MEANALT=1.08;MQM=37.4338;MQMR=50.3576;NS=93;NUMALT=1;ODDS=1.01536;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97304;QR=254105;RO=7137;RPL=0;RPP=5909.42;RPPR=15500.8;RPR=2720;RUN=1;SAF=0;SAP=5909.42;SAR=2720;SRF=0;SRP=15500.8;SRR=7137;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:16:2,14:2:72:14:504:-36.9218,0,-1.99131	0/1:96:44,52:44:1576:52:1872:-124.523,0,-112.396	0/1:103:46,57:46:1640:57:2048:-138.205,0,-115.921	0/0:328:328,0:328:11697:0:0:0,-98.7378,-1047.95	0/1:94:46,48:46:1635:48:1724:-112.855,0,-118.121	0/1:74:40,34:40:1414:34:1224:-78.4205,0,-104.514	0/0:149:149,0:149:5315:0:0:0,-44.8535,-474.876	0/1:201:88,113:88:3128:113:4023:-267.462,0,-219.786	0/0:42:42,0:42:1496:0:0:0,-12.6433,-134.397	0/0:78:78,0:78:2764:0:0:0,-23.4803,-247.617	0/0:34:34,0:34:1199:0:0:0,-10.235,-107.708	0/0:75:75,0:75:2657:0:0:0,-22.5772,-237.218	0/0:59:59,0:59:2088:0:0:0,-17.7608,-187.411	0/0:58:57,1:57:2027:1:36:0,-14.1607,-177.957	0/0:64:64,0:64:2284:0:0:0,-19.2659,-204.295	0/0:76:76,0:76:2690:0:0:0,-22.8783,-240.835	0/0:55:55,0:55:1942:0:0:0,-16.5566,-173.49	0/0:56:56,0:56:2004:0:0:0,-16.8577,-178.506	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.264	0/1:313:142,171:142:5088:171:6115:-422.912,0,-361.386	0/1:140:67,73:67:2371:73:2602:-173.089,0,-170.274	0/1:178:62,116:62:2215:116:4157:-303.809,0,-145.53	0/0:37:33,3:33:1180:3:108:0,-1.64171,-96.398	0/0:39:37,2:37:1316:2:72:0,-5.47202,-111.511	0/0:50:50,0:50:1779:0:0:0,-15.0515,-159.563	0/1:431:200,230:200:7104:230:8222:-575.06,0,-507.295	0/0:225:225,0:225:8012:0:0:0,-67.7317,-716.099	0/0:33:33,0:33:1176:0:0:0,-9.93399,-105.528	0/1:375:209,166:209:7447:166:5936:-398.284,0,-555.993	0/1:122:46,76:46:1643:76:2713:-187.831,0,-110.59	0/0:65:64,1:64:2285:1:36:0,-16.1793,-201.36	0/1:5:2,3:2:68:3:108:-7.73212,0,-4.92653	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.3965	.:.:.:.:.:.:.:.	0/1:13:10,3:10:345:3:108:-5.32388,0,-27.3424	0/1:10:2,8:2:72:8:288:-21.0726,0,-3.79749	0/1:198:99,99:99:3513:99:3535:-244.223,0,-255.909	0/1:217:82,134:82:2936:134:4800:-329.956,0,-196.517	0/0:52:52,0:52:1843:0:0:0,-15.6536,-164.369	0/1:4:2,2:2:72:2:72:-5.06403,0,-5.59554	0/0:229:229,0:229:8135:0:0:0,-68.9359,-727.561	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.152	0/0:141:141,0:141:5016:0:0:0,-42.4452,-447.782	0/0:57:57,0:57:2044:0:0:0,-17.1587,-183.259	0/1:54:26,28:26:932:28:1004:-68.2058,0,-67.5462	0/1:111:33,78:33:1166:78:2766:-205.384,0,-71.684	0/0:175:175,0:175:6252:0:0:0,-52.6802,-560.106	0/0:263:263,0:263:9313:0:0:0,-79.1709,-833.229	0/0:72:72,0:72:2573:0:0:0,-21.6742,-231.062	0/0:155:154,1:154:5486:1:36:0,-43.272,-487.857	0/1:191:64,127:64:2292:127:4540:-331.32,0,-148.634	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.5218	0/0:157:156,1:156:5583:1:36:0,-43.9627,-496.701	0/0:54:54,0:54:1935:0:0:0,-16.2556,-174.175	0/1:19:9,10:9:324:10:356:-24.122,0,-23.6614	0/1:201:99,102:99:3552:102:3664:-239.653,0,-257.032	0/0:48:48,0:48:1713:0:0:0,-14.4494,-153.174	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.8689	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.3736	0/0:72:72,0:72:2555:0:0:0,-21.6742,-228.535	0/1:118:53,65:53:1900:65:2322:-160.882,0,-134.43	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.72452	0/0:291:289,1:289:10296:1:36:0,-84.1082,-921.001	0/1:162:76,86:76:2716:86:3056:-207.627,0,-194.706	0/0:47:44,3:44:1568:3:108:0,-5.77494,-132.012	0/1:127:51,76:51:1819:76:2724:-191.243,0,-124.744	0/1:123:50,73:50:1760:73:2608:-183.957,0,-121.144	0/1:91:14,77:14:504:77:2768:-205.508,0,-18.1546	0/0:22:22,0:22:788:0:0:0,-6.62266,-70.6273	0/1:45:15,30:15:540:30:1080:-74.7567,0,-35.1831	0/1:86:40,46:40:1431:46:1644:-116.655,0,-102.692	0/0:13:13,0:13:460:0:0:0,-3.91339,-41.609	0/1:143:57,86:57:2017:86:3079:-211.642,0,-136.883	0/1:76:35,41:35:1232:41:1461:-98.2779,0,-87.8554	0/1:137:48,89:48:1715:89:3178:-220.165,0,-112.33	0/0:217:217,0:217:7730:0:0:0,-65.3235,-692.49	0/1:131:72,59:72:2549:59:2104:-133.224,0,-188.296	0/1:149:69,80:69:2433:80:2876:-192.074,0,-173.235	0/1:11:3,8:3:108:8:288:-20.7715,0,-6.72121	0/0:159:157,2:157:5579:2:72:0,-41.5956,-492.834	0/1:137:61,76:61:2158:76:2719:-180.077,0,-152.224	0/0:291:290,1:290:10355:1:36:0,-84.2121,-925.069	0/0:106:106,0:106:3783:0:0:0,-31.9092,-338.412	0/0:50:50,0:50:1784:0:0:0,-15.0515,-160.038	0/0:89:89,0:89:3165:0:0:0,-26.7917,-282.709	0/0:127:127,0:127:4523:0:0:0,-38.2308,-404.918	0/0:36:36,0:36:1274:0:0:0,-10.8371,-114.456	0/0:65:65,0:65:2311:0:0:0,-19.5669,-206.563	0/0:76:76,0:76:2724:0:0:0,-22.8783,-243.077	0/0:65:65,0:65:2310:0:0:0,-19.5669,-206.692	0/1:79:46,33:46:1618:33:1180:-73.8471,0,-121.361	0/1:56:22,34:22:772:34:1224:-87.4329,0,-52.7408	0/0:141:140,1:140:4976:1:36:0,-39.0576,-442.699	0/0:92:92,0:92:3284:0:0:0,-27.6948,-294.47
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chr12	20572041	.	T	C	112516	PASS	AB=0.496769;ABP=3.33306;AC=148;AF=0.787234;AN=188;AO=5382;CIGAR=1X;DP=7196;DPB=7196;DPRA=0;EPP=11689.9;EPPR=3931.2;GTI=2;LEN=1;MEANALT=1.05319;MQM=59.9955;MQMR=59.9956;NS=94;NUMALT=1;ODDS=0.314369;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=191996;QR=64847;RO=1809;RPL=0;RPP=11689.9;RPPR=3931.2;RPR=5382;RUN=1;SAF=5382;SAP=11689.9;SAR=0;SRF=1809;SRP=3931.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:25:7,18:7:252:18:648:-51.1261,0,-15.5032	0/1:88:50,38:50:1796:38:1364:-96.5701,0,-135.432	0/1:64:42,22:42:1508:22:779:-51.1661,0,-116.749	1/1:109:0,109:0:0:109:3900:-351.194,-32.8123,0	0/1:49:33,16:33:1188:16:576:-37.4245,0,-92.4781	0/1:47:21,26:21:752:26:928:-69.6898,0,-53.8578	1/1:43:1,42:1:36:42:1500:-131.696,-9.34602,0	0/1:136:52,84:52:1864:84:2999:-229.201,0,-127.099	1/1:67:0,67:0:0:67:2412:-217.336,-20.169,0	1/1:88:0,88:0:0:88:3143:-283.096,-26.4906,0	1/1:56:0,56:0:0:56:1983:-178.744,-16.8577,0	1/1:69:0,69:0:0:69:2457:-221.384,-20.7711,0	1/1:62:0,62:0:0:62:2203:-198.535,-18.6639,0	1/1:91:0,91:0:0:91:3247:-292.451,-27.3937,0	1/1:56:0,56:0:0:56:1996:-179.914,-16.8577,0	1/1:60:1,59:1:36:59:2091:-184.861,-14.4635,0	1/1:74:0,74:0:0:74:2625:-236.497,-22.2762,0	1/1:50:0,50:0:0:50:1764:-159.041,-15.0515,0	1/1:46:0,46:0:0:46:1635:-147.438,-13.8474,0	0/1:190:89,101:89:3200:101:3597:-266.743,0,-231.026	0/1:130:75,55:75:2688:55:1960:-137.542,0,-203.031	0/1:97:67,30:67:2400:30:1072:-67.5925,0,-187.057	1/1:62:0,62:0:0:62:2220:-200.064,-18.6639,0	1/1:117:9,108:9:320:108:3844:-317.016,-6.07815,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:291:157,134:157:5628:134:4781:-342.848,0,-419.04	1/1:72:0,72:0:0:72:2572:-231.73,-21.6742,0	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	0/1:126:51,75:51:1836:75:2696:-204.954,0,-127.591	0/1:125:65,60:65:2340:60:2140:-155.239,0,-173.23	1/1:135:3,132:3:108:132:4712:-414.165,-30.5639,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:190:101,89:101:3612:89:3177:-228.956,0,-268.091	0/1:163:86,77:86:3076:77:2759:-199.481,0,-228.001	1/1:64:0,64:0:0:64:2284:-205.822,-19.2659,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:123:0,123:0:0:123:4401:-396.263,-37.0267,0	1/1:26:0,26:0:0:26:928:-83.8377,-7.82678,0	1/1:83:0,83:0:0:83:2960:-266.634,-24.9855,0	1/1:60:0,60:0:0:60:2138:-192.687,-18.0618,0	0/1:46:20,26:20:720:26:923:-69.5394,0,-51.2814	0/1:91:47,44:47:1688:44:1580:-115.098,0,-124.813	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:78:0,78:0:0:78:2773:-249.81,-23.4803,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:90:0,90:0:0:90:3212:-289.304,-27.0927,0	0/1:139:73,66:73:2604:66:2353:-170.186,0,-192.766	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:104:0,104:0:0:104:3715:-334.552,-31.3071,0	1/1:50:0,50:0:0:50:1780:-160.482,-15.0515,0	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	0/1:83:44,39:44:1572:39:1400:-101.314,0,-116.786	1/1:42:0,42:0:0:42:1498:-135.115,-12.6433,0	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	1/1:79:0,78:0:0:78:2792:-251.161,-23.4803,0	0/1:146:67,79:67:2399:79:2807:-208.92,0,-172.216	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:120:0,119:0:0:119:4233:-380.791,-35.8226,0	0/1:136:79,57:79:2813:57:2040:-142.932,0,-212.468	1/1:83:3,80:3:108:80:2860:-247.563,-14.9103,0	0/1:62:31,31:31:1112:31:1112:-81.7275,0,-81.7275	0/1:141:59,82:59:2120:82:2928:-221.31,0,-148.623	0/1:61:33,28:33:1184:28:988:-70.8711,0,-88.5055	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	0/1:38:19,19:19:680:19:680:-50.09,0,-50.09	0/1:102:47,55:47:1679:55:1976:-147.41,0,-120.691	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:64:32,32:32:1152:32:1140:-83.6433,0,-84.7242	0/1:51:20,31:20:716:31:1116:-85.3992,0,-49.407	0/1:153:78,75:78:2792:75:2657:-193.318,0,-205.463	1/1:137:0,137:0:0:137:4881:-439.441,-41.2411,0	0/1:136:62,74:62:2220:74:2652:-197.978,0,-159.124	0/1:101:37,64:37:1332:64:2271:-174.248,0,-89.7784	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	1/1:109:1,108:1:36:108:3877:-345.525,-29.214,0	0/1:80:44,35:44:1584:35:1260:-89.5643,0,-118.71	1/1:133:0,132:0:0:132:4709:-423.61,-39.736,0	1/1:106:0,106:0:0:106:3755:-338.153,-31.9092,0	1/1:61:0,61:0:0:61:2167:-195.296,-18.3628,0	1/1:67:0,67:0:0:67:2391:-215.447,-20.169,0	1/1:137:1,136:1:36:136:4834:-431.619,-37.6428,0	1/1:41:0,41:0:0:41:1451:-130.885,-12.3422,0	1/1:70:0,70:0:0:70:2503:-225.522,-21.0721,0	1/1:58:0,58:0:0:58:2084:-187.83,-17.4597,0	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:98:41,57:41:1468:57:2015:-152.122,0,-102.915	0/1:55:35,20:35:1260:20:703:-47.0369,0,-97.1488	1/1:90:0,89:0:0:89:3188:-286.784,-26.7917,0	1/1:92:0,92:0:0:92:3250:-292.721,-27.6948,0
chr12	20572059	.	T	C	110604	PASS	AB=0.495214;ABP=3.71701;AC=148;AF=0.787234;AN=188;AO=5288;CIGAR=1X;DP=7109;DPB=7109;DPRA=0;EPP=11226.7;EPPR=3817.06;GTI=2;LEN=1;MEANALT=1.09574;MQM=59.997;MQMR=59.9895;NS=94;NUMALT=1;ODDS=0.931912;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=187315;QR=64966;RO=1812;RPL=30;RPP=11226.7;RPPR=3817.06;RPR=5258;RUN=1;SAF=5288;SAP=11485.8;SAR=0;SRF=1812;SRP=3937.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:7,17:7:252:17:600:-47.1045,0,-15.8042	0/1:89:51,38:51:1836:38:1332:-93.3854,0,-138.729	0/1:65:43,22:43:1540:22:788:-51.6778,0,-119.326	1/1:110:0,110:0:0:110:3911:-352.184,-33.1133,0	0/1:50:33,17:33:1184:17:595:-38.8252,0,-91.8168	0/1:49:22,27:22:784:27:964:-72.3264,0,-56.1334	1/1:43:2,41:2:72:41:1442:-123.238,-6.10757,0	0/1:136:52,83:52:1868:83:2924:-222.397,0,-127.4	1/1:66:0,66:0:0:66:2348:-211.58,-19.868,0	1/1:86:0,86:0:0:86:3052:-274.911,-25.8886,0	1/1:54:0,54:0:0:54:1881:-169.567,-16.2556,0	1/1:67:0,67:0:0:67:2399:-216.167,-20.169,0	1/1:63:0,63:0:0:63:2251:-202.853,-18.9649,0	1/1:91:0,91:0:0:91:3251:-292.811,-27.3937,0	1/1:56:0,56:0:0:56:1991:-179.464,-16.8577,0	1/1:60:1,59:1:36:59:2105:-186.121,-14.4635,0	1/1:72:0,72:0:0:72:2527:-227.681,-21.6742,0	1/1:48:1,47:1:36:47:1671:-147.196,-10.9687,0	1/1:47:0,47:0:0:47:1684:-151.847,-14.1484,0	0/1:188:89,99:89:3200:99:3511:-259.609,0,-231.628	0/1:127:73,54:73:2612:54:1905:-133.495,0,-197.097	0/1:96:66,30:66:2368:30:1054:-66.2703,0,-184.479	1/1:59:0,59:0:0:59:2100:-189.27,-17.7608,0	1/1:115:9,106:9:324:106:3741:-307.388,-5.1126,0	1/1:29:0,29:0:0:29:1032:-93.1935,-8.72987,0	0/1:294:161,133:161:5776:133:4703:-334.932,0,-431.45	1/1:67:0,67:0:0:67:2357:-212.388,-20.169,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:128:51,77:51:1820:77:2706:-205.251,0,-125.549	0/1:124:63,60:63:2264:60:2114:-153.142,0,-166.636	1/1:132:4,127:4:144:127:4501:-391.949,-26.4811,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:190:101,89:101:3611:89:3170:-228.324,0,-268	0/1:163:85,77:85:3031:77:2710:-195.163,0,-224.042	1/1:62:0,62:0:0:62:2200:-198.264,-18.6639,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:123:0,123:0:0:123:4327:-389.611,-37.0267,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:76:0,76:0:0:76:2687:-242.076,-22.8783,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	0/1:47:20,27:20:720:27:960:-72.5679,0,-50.9804	0/1:91:47,44:47:1680:44:1563:-113.567,0,-124.093	1/1:49:0,49:0:0:49:1722:-155.264,-14.7505,0	1/1:77:1,76:1:36:76:2661:-236.138,-19.581,0	1/1:36:0,36:0:0:36:1279:-115.412,-10.8371,0	1/1:84:0,84:0:0:84:2973:-267.804,-25.2865,0	0/1:135:70,65:70:2516:65:2332:-169.501,0,-186.052	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:101:0,100:0:0:100:3523:-316.921,-30.103,0	1/1:46:0,46:0:0:46:1627:-146.718,-13.8474,0	0/1:18:10,8:10:360:8:279:-20.029,0,-27.3258	0/1:81:44,37:44:1580:37:1298:-92.7362,0,-118.108	1/1:42:0,42:0:0:42:1490:-134.393,-12.6433,0	0/1:14:9,5:9:324:5:171:-11.511,0,-25.2914	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:78:1,77:1:36:77:2748:-243.964,-19.8821,0	0/1:145:66,79:66:2363:79:2791:-207.78,0,-169.278	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:117:0,117:0:0:117:4142:-372.964,-35.2205,0	0/1:134:78,56:78:2787:56:1995:-139.485,0,-210.732	1/1:80:3,76:3:108:76:2679:-231.282,-14.066,0	0/1:63:31,32:31:1103:32:1140:-83.9443,0,-80.6149	0/1:142:60,82:60:2160:82:2897:-218.221,0,-151.92	0/1:63:34,29:34:1215:29:1015:-72.696,0,-90.6909	1/1:35:0,35:0:0:35:1243:-112.174,-10.5361,0	0/1:35:19,16:19:684:16:572:-41.2774,0,-51.3543	0/1:98:44,54:44:1584:54:1924:-143.936,0,-113.351	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:65:32,33:32:1152:33:1150:-84.2375,0,-84.4232	0/1:50:20,29:20:716:29:1036:-78.55,0,-49.7622	0/1:155:79,76:79:2840:76:2680:-194.786,0,-209.178	1/1:135:0,135:0:0:135:4783:-430.629,-40.6391,0	0/1:136:61,75:61:2192:75:2664:-199.064,0,-156.605	0/1:102:38,64:38:1360:64:2266:-173.497,0,-91.9955	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	1/1:111:1,110:1:36:110:3904:-347.957,-29.8161,0	0/1:79:45,34:45:1600:34:1207:-85.1539,0,-120.509	1/1:128:0,128:0:0:128:4538:-408.59,-38.5318,0	1/1:105:0,105:0:0:105:3740:-336.802,-31.6082,0	1/1:61:0,61:0:0:61:2151:-193.855,-18.3628,0	1/1:65:0,65:0:0:65:2307:-207.891,-19.567,0	1/1:136:0,135:0:0:135:4760:-428.201,-40.6391,0	1/1:39:0,39:0:0:39:1377:-124.227,-11.7402,0	1/1:67:0,67:0:0:67:2366:-213.198,-20.169,0	1/1:58:0,58:0:0:58:2066:-186.21,-17.4597,0	1/1:34:0,34:0:0:34:1209:-109.114,-10.235,0	0/1:97:41,56:41:1472:56:1982:-149.453,0,-103.576	0/1:55:36,19:36:1296:19:680:-44.9725,0,-100.387	1/1:89:0,89:0:0:89:3156:-284.266,-26.7917,0	1/1:84:0,83:0:0:83:2927:-263.305,-24.9855,0
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chr12	20727787	.	T	C	18504.4	PASS	AB=0.541907;ABP=26.852;AC=45;AF=0.239362;AN=188;AO=856;CIGAR=1X;DP=3685;DPB=3685;DPRA=1.04859;EPP=310.223;EPPR=1049.1;GTI=2;LEN=1;MEANALT=1.04348;MQM=59.986;MQMR=60;NS=94;NUMALT=1;ODDS=0.850944;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=30049;QR=100282;RO=2827;RPL=856;RPP=1861.79;RPPR=6141.76;RPR=0;RUN=1;SAF=602;SAP=310.223;SAR=254;SRF=1997;SRP=1049.1;SRR=830;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:17:8,9:8:284:9:312:-23.2978,0,-20.7858	0/1:37:17,20:17:608:20:697:-51.9126,0,-43.9139	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:7:2,4:2:72:4:144:-11.1795,0,-4.69731	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:10:2,8:2:57:8:283:-22.8021,0,-2.40301	0/1:18:7,11:7:252:11:388:-29.8388,0,-17.6104	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:148:147,1:147:5138:1:32:0,-41.3531,-459.368	0/1:88:48,40:48:1700:40:1402:-99.985,0,-126.793	0/0:83:83,0:83:2976:0:0:0,-24.9855,-268.072	0/0:54:54,0:54:1918:0:0:0,-16.2556,-172.896	0/0:64:64,0:64:2271:0:0:0,-19.2659,-204.652	0/1:63:29,34:29:1040:34:1188:-88.2572,0,-74.9495	0/0:53:53,0:53:1879:0:0:0,-15.9546,-169.388	0/0:41:41,0:41:1440:0:0:0,-12.3422,-129.893	0/0:109:109,0:109:3891:0:0:0,-32.8123,-350.385	0/1:10:2,8:2:68:8:272:-21.799,0,-3.44741	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.6223	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:24:7,17:7:252:17:597:-46.8314,0,-15.8042	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5944	0/1:16:6,10:6:216:10:344:-26.4756,0,-14.974	0/1:10:7,3:7:234:3:108:-7.06487,0,-18.3757	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:62:21,41:21:734:41:1449:-112.041,0,-47.7166	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.726	0/1:116:45,71:45:1612:71:2487:-189.159,0,-110.451	0/1:54:16,38:16:576:38:1336:-104.282,0,-35.9194	0/1:116:62,54:62:2191:54:1923:-138.427,0,-162.536	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	0/0:129:127,1:127:4506:1:36:0,-35.2934,-402.113	0/1:27:6,21:6:216:21:752:-59.8784,0,-11.6627	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:84:84,0:84:2968:0:0:0,-25.2865,-267.353	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:56:34,22:34:1201:22:766:-52.4008,0,-91.536	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:12:12,0:12:413:0:0:0,-3.61236,-37.4978	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:30:9,21:9:320:21:735:-57.439,0,-20.1115	0/1:13:4,9:4:144:9:316:-24.8655,0,-9.40023	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:67:42,25:42:1492:25:866:-58.0824,0,-114.406	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:40:21,19:21:744:19:676:-49.1268,0,-55.2431	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:10:10,0:10:343:0:0:0,-3.0103,-31.2006	0/1:17:5,12:5:180:12:432:-34.1013,0,-11.4346	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:13:7,6:7:252:6:212:-15.5114,0,-19.1156	0/1:17:4,13:4:144:13:459:-36.5266,0,-8.19611	0/0:224:224,0:224:7920:0:0:0,-67.4307,-712.831	0/1:7:4,3:4:131:3:108:-7.96796,0,-10.0063	0/1:40:22,18:22:773:18:615:-43.6266,0,-57.8483	0/0:58:58,0:58:2072:0:0:0,-17.4597,-186.751	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:18:10,8:10:356:8:288:-20.8489,0,-26.9627	0/1:23:10,13:10:343:13:456:-34.4495,0,-24.2769	0/0:6:6,0:6:207:0:0:0,-1.80618,-18.9669	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:26:11,15:11:383:15:536:-40.748,0,-26.9765	0/1:69:30,39:30:1072:39:1382:-103.907,0,-76.0214	0/0:6:6,0:6:204:0:0:0,-1.80618,-18.6934	0/1:17:10,7:10:360:7:248:-17.5467,0,-27.6268	0/0:12:12,0:12:419:0:0:0,-3.61236,-38.0427	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.37	0/0:58:58,0:58:2054:0:0:0,-17.4597,-185.13	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/0:95:95,0:95:3372:0:0:0,-28.5978,-303.696	0/0:18:18,0:18:633:0:0:0,-5.41854,-57.2951	0/0:56:56,0:56:1981:0:0:0,-16.8577,-178.563	0/1:62:36,26:36:1292:26:920:-64.4532,0,-97.9199	0/0:244:244,0:244:8656:0:0:0,-73.4513,-779.04	0/1:249:114,135:114:4033:135:4662:-344.793,0,-288.204	0/1:48:21,27:21:748:27:934:-69.9193,0,-53.1959	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:91:91,0:91:3217:0:0:0,-27.3937,-289.754
chr12	20818871	.	G	A	26708.8	PASS	AB=0.536143;ABP=36.1299;AC=43;AF=0.231183;AN=186;AO=1580;CIGAR=1X;DP=5969;DPB=5969;DPRA=1.28036;EPP=3433.94;EPPR=9518.4;GTI=1;LEN=1;MEANALT=1;MQM=59.9899;MQMR=59.9676;NS=93;NUMALT=1;ODDS=0.313921;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=56294;QR=154369;RO=4382;RPL=0;RPP=3433.94;RPPR=9509.72;RPR=1580;RUN=1;SAF=0;SAP=3433.94;SAR=1580;SRF=1;SRP=9509.72;SRR=4381;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:23:9,14:9:320:14:504:-38.7744,0,-22.2187	0/1:117:44,73:44:1556:73:2584:-197.581,0,-105.111	0/0:133:131,2:131:4630:2:72:0,-33.2003,-410.026	0/1:22:8,14:8:275:14:500:-38.7135,0,-18.4608	0/1:23:16,7:16:555:7:252:-16.1053,0,-43.3524	0/0:62:61,0:61:2149:0:0:0,-18.3628,-193.317	0/1:66:39,27:39:1379:27:936:-64.6823,0,-104.54	0/1:43:18,25:18:627:25:889:-67.3838,0,-43.8101	0/0:22:22,0:22:755:0:0:0,-6.62266,-68.264	0/0:72:72,0:72:2537:0:0:0,-21.6742,-228.581	0/1:99:59,40:59:2061:40:1432:-99.3723,0,-155.958	0/0:77:76,0:76:2680:0:0:0,-22.8783,-241.184	0/0:71:71,0:71:2497:0:0:0,-21.3731,-224.983	0/0:75:75,0:75:2637:0:0:0,-22.5772,-237.577	0/1:71:38,33:38:1312:33:1149:-82.3385,0,-97.0006	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.657	0/0:36:36,0:36:1259:0:0:0,-10.8371,-113.612	0/0:31:30,1:30:1067:1:36:0,-5.73365,-92.7429	0/1:82:33,49:33:1164:49:1756:-133.64,0,-80.3825	0/1:97:59,38:59:2047:38:1352:-92.7805,0,-155.297	0/1:72:21,51:21:739:51:1828:-143.127,0,-45.1582	0/0:90:89,1:89:3148:1:36:0,-23.4944,-279.947	0/0:29:27,2:27:949:2:72:0,-1.89315,-78.8861	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:116:40,76:40:1409:76:2714:-209.583,0,-92.1857	0/0:115:115,0:115:4052:0:0:0,-34.6184,-364.869	0/0:47:47,0:47:1656:0:0:0,-14.1484,-149.325	0/1:143:61,82:61:2165:82:2943:-222.055,0,-152.068	0/1:102:42,60:42:1504:60:2151:-163.151,0,-104.95	0/0:125:123,2:123:4333:2:72:0,-30.792,-383.309	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:8:3,5:3:99:5:176:-13.7768,0,-6.82834	0/1:189:82,107:82:2907:107:3823:-287.372,0,-204.969	0/1:76:39,37:39:1384:37:1328:-96.944,0,-101.981	0/0:71:71,0:71:2481:0:0:0,-21.3731,-223.537	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:78:78,0:78:2748:0:0:0,-23.4803,-247.56	0/0:40:40,0:40:1415:0:0:0,-12.0412,-127.647	0/0:82:81,0:81:2860:0:0:0,-24.3834,-257.278	0/0:60:60,0:60:2116:0:0:0,-18.0618,-190.707	0/1:69:40,29:40:1436:29:1006:-70.0755,0,-108.767	0/1:68:34,34:34:1207:34:1213:-89.0052,0,-88.4652	0/0:66:66,0:66:2311:0:0:0,-19.868,-206.973	0/0:80:79,0:79:2795:0:0:0,-23.7814,-251.429	0/0:40:40,0:40:1411:0:0:0,-12.0412,-127.287	0/0:77:76,0:76:2678:0:0:0,-22.8783,-240.907	0/1:69:26,43:26:904:43:1529:-117.13,0,-60.8775	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:60:60,0:60:2117:0:0:0,-18.0618,-190.797	0/0:50:49,1:49:1725:1:36:0,-11.4532,-151.934	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:106:48,58:48:1712:58:2067:-154.39,0,-122.457	0/0:27:27,0:27:937:0:0:0,-8.12781,-84.6411	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:60:60,0:60:2127:0:0:0,-18.0618,-191.698	0/1:100:45,55:45:1567:55:1967:-147.201,0,-111.217	.:.:.:.:.:.:.:.	0/0:63:63,0:63:2213:0:0:0,-18.9649,-199.431	0/1:83:48,35:48:1697:35:1226:-85.6562,0,-128.029	0/0:21:21,0:21:715:0:0:0,-6.32163,-64.6638	0/1:47:20,27:20:720:27:963:-72.8375,0,-50.9804	0/1:113:48,65:48:1690:65:2319:-174.953,0,-118.366	0/1:104:32,72:32:1139:72:2588:-201.861,0,-71.5113	0/0:58:58,0:58:2047:0:0:0,-17.4597,-184.502	0/1:59:20,39:20:690:39:1364:-105.295,0,-44.6586	0/1:56:34,22:34:1199:22:792:-54.748,0,-91.3571	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:101:45,56:45:1592:56:1973:-147.437,0,-113.166	0/1:50:26,24:26:923:24:849:-61.6763,0,-68.3353	0/1:95:47,48:47:1622:48:1711:-125.677,0,-117.666	0/0:69:68,0:68:2381:0:0:0,-20.47,-214.185	0/0:73:73,0:73:2602:0:0:0,-21.9752,-234.425	0/1:61:27,34:27:949:34:1220:-91.744,0,-67.3599	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:40:40,0:40:1401:0:0:0,-12.0412,-126.385	0/1:85:40,45:40:1420:45:1608:-119.423,0,-102.51	0/0:74:74,0:74:2596:0:0:0,-22.2762,-233.698	0/0:53:53,0:53:1882:0:0:0,-15.9546,-169.657	0/0:94:94,0:94:3291:0:0:0,-28.2968,-296.412	0/0:60:60,0:60:2119:0:0:0,-18.0618,-190.976	0/0:152:151,0:151:5293:0:0:0,-45.4555,-476.119	0/0:41:41,0:41:1452:0:0:0,-12.3422,-130.976	0/0:99:99,0:99:3444:0:0:0,-29.802,-310.176	0/1:78:45,33:45:1560:33:1183:-83.2978,0,-116.89	0/0:46:46,0:46:1610:0:0:0,-13.8474,-145.188	0/1:116:71,45:71:2483:45:1603:-109.64,0,-188.806	0/1:95:35,60:35:1252:60:2148:-164.99,0,-84.3872	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:129:129,0:129:4558:0:0:0,-38.8329,-410.389
chr12	20818877	.	C	T	84520.3	PASS	AB=0.452432;ABP=57.9619;AC=144;AF=0.774194;AN=186;AO=4132;CIGAR=1X;DP=5682;DPB=5682;DPRA=20.7912;EPP=8975.53;EPPR=3364.45;GTI=2;LEN=1;MEANALT=1.02198;MQM=59.9635;MQMR=59.9897;NS=93;NUMALT=1;ODDS=0.742446;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=145675;QR=55038;RO=1548;RPL=1;RPP=8966.85;RPPR=3364.45;RPR=4131;RUN=1;SAF=1;SAP=8966.85;SAR=4131;SRF=0;SRP=3364.45;SRR=1548;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:22:13,9:13:468:9:316:-22.1562,0,-35.837	0/1:114:71,43:71:2516:43:1524:-103.136,0,-192.37	1/1:123:2,121:2:72:121:4247:-375.575,-30.19,0	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/1:24:8,16:8:284:16:568:-44.2271,0,-18.6786	1/1:55:0,55:0:0:55:1954:-176.136,-16.5567,0	0/1:61:26,35:26:920:35:1236:-93.1814,0,-64.7542	0/1:38:23,15:23:819:15:531:-36.6828,0,-62.5924	1/1:21:0,21:0:0:21:729:-65.9287,-6.32163,0	1/1:67:0,67:0:0:67:2355:-212.21,-20.169,0	0/1:97:39,58:39:1371:58:2002:-151.251,0,-94.4845	1/1:69:0,69:0:0:69:2404:-216.616,-20.7711,0	1/1:69:0,69:0:0:69:2418:-217.877,-20.7711,0	1/1:72:0,72:0:0:72:2564:-231.011,-21.6742,0	0/1:69:32,37:32:1148:37:1301:-96.6182,0,-82.8588	1/1:53:1,52:1:32:52:1820:-160.882,-12.7553,0	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	1/1:30:1,29:1:36:29:1028:-89.2348,-5.43263,0	0/1:79:49,30:49:1736:30:1064:-72.2903,0,-132.74	0/1:95:38,57:38:1338:57:2010:-152.574,0,-92.1206	0/1:70:49,21:49:1764:21:752:-46.9342,0,-137.972	1/1:83:1,82:1:36:82:2894:-257.1,-21.3872,0	1/1:26:2,24:2:72:24:849:-69.892,-0.990058,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	0/1:111:73,38:73:2604:38:1352:-88.566,0,-201.194	1/1:107:0,107:0:0:107:3787:-341.032,-32.2102,0	1/1:44:1,43:1:36:43:1519:-133.404,-9.64705,0	0/1:141:85,56:85:2991:56:1967:-134.86,0,-226.977	0/1:101:58,42:58:2060:42:1487:-103.661,0,-155.206	1/1:111:2,109:2:68:109:3833:-338.713,-26.9566,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:8:0,8:0:0:8:280:-25.5393,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:181:102,78:102:3601:78:2729:-191.31,0,-269.751	0/1:73:38,35:38:1359:35:1237:-89.6577,0,-100.635	1/1:66:0,66:0:0:66:2304:-207.619,-19.868,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:72:0,72:0:0:72:2568:-231.37,-21.6742,0	1/1:39:0,39:0:0:39:1384:-124.859,-11.7402,0	1/1:79:0,79:0:0:79:2787:-251.071,-23.7814,0	1/1:57:1,56:1:36:56:1953:-172.446,-13.5604,0	0/1:67:29,38:29:1040:38:1364:-102.892,0,-73.7454	0/1:63:33,30:33:1167:30:1076:-78.188,0,-86.3715	1/1:61:0,61:0:0:61:2151:-192.582,-18.3628,0	1/1:74:0,74:0:0:74:2602:-234.43,-22.2762,0	1/1:37:0,37:0:0:37:1312:-118.382,-11.1381,0	1/1:76:0,76:0:0:76:2699:-243.155,-22.8783,0	0/1:68:42,26:42:1503:26:920:-62.5908,0,-115.094	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:56:0,56:0:0:56:1952:-175.954,-16.8577,0	1/1:46:1,45:1:36:45:1600:-140.692,-10.2491,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:99:56,43:56:2012:43:1501:-105.579,0,-151.551	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	1/1:58:1,57:1:36:57:2015:-178.024,-13.8615,0	0/1:96:53,43:53:1857:43:1507:-107.024,0,-138.506	.:.:.:.:.:.:.:.	1/1:60:0,60:0:0:60:2109:-190.078,-18.0618,0	0/1:82:34,48:34:1216:48:1680:-126.802,0,-85.0621	1/1:20:0,20:0:0:20:708:-64.0456,-6.0206,0	0/1:47:27,20:27:963:20:716:-50.6193,0,-72.8375	0/1:107:63,44:63:2268:44:1560:-108.481,0,-172.172	0/1:101:72,29:72:2563:29:1032:-62.7894,0,-200.516	1/1:57:0,57:0:0:57:2007:-180.903,-17.1587,0	0/1:59:39,20:39:1392:20:716:-47.0069,0,-107.818	0/1:54:23,31:23:804:31:1112:-84.1357,0,-56.4209	1/1:4:0,4:0:0:4:136:-12.5755,-1.20412,0	0/1:97:56,41:56:1994:41:1463:-102.766,0,-150.53	0/1:45:22,23:22:773:23:824:-60.937,0,-56.3431	0/1:82:44,38:44:1580:38:1345:-96.6651,0,-117.807	1/1:64:0,64:0:0:64:2260:-203.664,-19.2659,0	1/1:68:0,68:0:0:68:2403:-216.525,-20.47,0	0/1:58:34,24:34:1216:24:856:-59.9014,0,-92.2868	0/1:4:1,3:1:36:3:100:-8.12632,0,-2.39415	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	0/1:78:44,34:44:1567:34:1181:-83.1119,0,-117.841	1/1:72:0,72:0:0:72:2531:-228.017,-21.6742,0	1/1:50:0,50:0:0:50:1754:-158.142,-15.0515,0	1/1:89:0,89:0:0:89:3098:-279.05,-26.7917,0	1/1:58:0,58:0:0:58:2068:-186.391,-17.4597,0	1/1:145:0,145:0:0:145:5049:-454.558,-43.6494,0	1/1:40:0,40:0:0:40:1395:-125.846,-12.0412,0	1/1:96:0,96:0:0:96:3317:-298.754,-28.8989,0	0/1:78:33,45:33:1179:45:1588:-119.691,0,-82.9369	1/1:42:0,42:0:0:42:1480:-133.494,-12.6433,0	0/1:110:42,68:42:1461:68:2407:-183.774,0,-98.6664	0/1:93:60,33:60:2144:33:1172:-77.7917,0,-165.232	1/1:40:0,40:0:0:40:1416:-127.737,-12.0412,0	1/1:129:0,129:0:0:129:4561:-410.66,-38.8329,0
chr12	20824503	.	T	A	40448.8	PASS	AB=0.521309;ABP=20.9641;AC=43;AF=0.228723;AN=188;AO=2383;CIGAR=1X;DP=9092;DPB=9092;DPRA=1.19409;EPP=5177.63;EPPR=14361.5;GTI=3;LEN=1;MEANALT=1;MQM=53.8338;MQMR=59.8614;NS=94;NUMALT=1;ODDS=0.82592;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=85348;QR=240133;RO=6708;RPL=0;RPP=5177.63;RPPR=14361.5;RPR=2383;RUN=1;SAF=2383;SAP=5177.63;SAR=0;SRF=6708;SRP=14569.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:46:23,23:23:828:23:820:-60.123,0,-60.9967	0/1:148:72,76:72:2580:76:2722:-199.184,0,-187.897	0/0:149:149,0:149:5316:0:0:0,-44.8535,-478.574	0/1:40:17,23:17:612:23:824:-62.3063,0,-43.3722	0/1:30:16,14:16:576:14:504:-36.473,0,-43.1441	0/0:59:59,0:59:2074:0:0:0,-17.7608,-186.93	0/1:178:95,83:95:3381:83:2972:-213.339,0,-250.922	0/1:97:52,45:52:1868:45:1607:-115.226,0,-138.771	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:64:64,0:64:2288:0:0:0,-19.2659,-205.162	0/1:96:48,48:48:1724:48:1728:-126.55,0,-126.49	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/0:44:44,0:44:1572:0:0:0,-13.2453,-141.772	0/0:75:75,0:75:2687:0:0:0,-22.5772,-242.074	0/1:90:45,45:45:1595:45:1620:-118.808,0,-116.747	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:226:93,133:93:3332:133:4760:-359.516,0,-232.065	0/1:216:110,106:110:3948:106:3772:-273.339,0,-290.488	0/1:111:41,70:41:1459:70:2486:-188.381,0,-98.1909	0/0:146:146,0:146:5243:0:0:0,-43.9504,-472.005	0/0:60:56,4:56:1987:4:144:0,-4.75778,-165.796	0/0:102:101,0:101:3628:0:0:0,-30.404,-326.364	0/1:280:129,151:129:4632:151:5426:-403.271,0,-332.753	0/0:261:261,0:261:9329:0:0:0,-78.5688,-839.567	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:214:115,99:115:4118:99:3564:-255.652,0,-306.383	0/1:148:80,68:80:2868:68:2419:-172.942,0,-213.804	0/0:114:114,0:114:4080:0:0:0,-34.3174,-367.386	0/1:17:8,9:8:288:9:324:-24.2811,0,-21.1499	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5543	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:15:2,13:2:72:13:468:-37.8748,0,-2.32127	0/1:18:11,7:11:392:7:252:-17.3898,0,-30.2015	0/1:246:116,130:116:4168:130:4651:-343.248,0,-300.391	0/1:143:86,57:86:3062:57:2052:-141.459,0,-232.762	0/0:57:57,0:57:2030:0:0:0,-17.1587,-182.971	1/1:2:0,2:0:0:2:72:-6.83179,-0.60206,0	0/0:147:147,0:147:5250:0:0:0,-44.2514,-472.635	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:150:150,0:150:5366:0:0:0,-45.1545,-483.014	0/0:55:55,0:55:1971:0:0:0,-16.5566,-176.644	0/1:49:23,26:23:824:26:932:-69.0706,0,-59.7328	0/1:137:71,66:71:2539:66:2376:-172.354,0,-187.519	0/0:110:110,0:110:3948:0:0:0,-33.1133,-355.511	0/0:184:184,0:184:6584:0:0:0,-55.3895,-592.641	0/0:87:86,1:86:3088:1:36:0,-22.595,-274.553	0/0:109:109,0:109:3912:0:0:0,-32.8123,-352.264	0/1:73:37,36:37:1319:36:1296:-94.4983,0,-97.036	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:104:104,0:104:3727:0:0:0,-31.3071,-335.63	0/0:110:110,0:110:3930:0:0:0,-33.1133,-353.892	0/1:10:2,8:2:72:8:288:-23.2199,0,-3.82642	0/1:170:80,90:80:2872:90:3216:-237.868,0,-207.541	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:10:4,6:4:144:6:216:-16.7521,0,-10.3033	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:108:108,0:108:3868:0:0:0,-32.5112,-348.315	0/1:145:62,83:62:2220:83:2976:-223.257,0,-156.415	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:250:250,0:250:8988:0:0:0,-75.2575,-808.894	0/1:189:89,100:89:3173:100:3595:-265.449,0,-228.899	0/0:56:55,1:55:1968:1:36:0,-13.262,-173.799	0/1:92:30,62:30:1080:62:2213:-170.484,0,-69.8185	0/1:164:81,83:81:2895:83:2968:-216.875,0,-211.417	0/1:141:41,100:41:1464:100:3592:-279.989,0,-89.6108	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/1:42:11,31:11:387:31:1112:-87.4877,0,-22.5227	0/1:45:30,15:30:1080:15:536:-34.9668,0,-83.9669	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:155:89,66:89:3171:66:2364:-165.932,0,-238.927	0/1:102:57,45:57:2035:45:1603:-112.54,0,-152.717	0/1:182:97,85:97:3432:85:3020:-216.022,0,-254.307	0/0:143:143,0:143:5123:0:0:0,-43.0473,-461.211	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.861	0/1:73:36,37:36:1296:37:1328:-97.684,0,-94.9687	0/1:20:12,8:12:428:8:288:-20.206,0,-32.8382	0/0:95:93,2:93:3336:2:72:0,-21.7661,-293.625	0/1:107:57,50:57:2044:50:1792:-128.376,0,-152.021	0/0:307:307,0:307:10988:0:0:0,-92.4162,-988.816	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:85:85,0:85:3042:0:0:0,-25.5875,-273.995	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/0:145:145,0:145:5187:0:0:0,-43.6493,-466.969	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:78:78,0:78:2808:0:0:0,-23.4803,-252.958	0/1:82:35,47:35:1243:47:1680:-126.091,0,-87.4894	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:110:43,67:43:1540:67:2408:-183.409,0,-105.78	0/1:95:33,62:33:1171:62:2218:-169.981,0,-77.0988	0/0:135:135,0:135:4840:0:0:0,-40.639,-415.372	0/0:110:110,0:110:3951:0:0:0,-33.1133,-355.78
chr12	20824512	.	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chr12	20850183	.	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chr12	20860179	.	T	C	171854	PASS	AB=0.485929;ABP=11.2603;AC=146;AF=0.776596;AN=188;AO=7095;CIGAR=1X;DP=9574;DPB=9574;DPRA=102.935;EPP=8838.6;EPPR=1270.69;GTI=6;LEN=1;MEANALT=1;MQM=59.9832;MQMR=60;NS=94;NUMALT=1;ODDS=0.338672;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=253847;QR=88886;RO=2479;RPL=6234;RPP=8838.6;RPPR=1270.69;RPR=861;RUN=1;SAF=7095;SAP=15409.6;SAR=0;SRF=2479;SRP=5386.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,51:0:0:51:1803:-162.548,-15.3525,0	0/1:163:93,70:93:3344:70:2507:-176.813,0,-252.108	0/1:90:45,45:45:1607:45:1603:-117.466,0,-117.827	1/1:282:0,282:0:0:282:10081:-907.222,-84.8905,0	0/1:44:19,25:19:680:25:892:-67.3544,0,-48.2838	0/1:67:38,29:38:1368:29:1044:-74.1058,0,-103.252	1/1:58:0,58:0:0:58:2052:-184.95,-17.4597,0	0/1:166:92,74:92:3312:74:2652:-188.955,0,-248.326	0/1:119:82,37:82:2948:37:1328:-83.9997,0,-229.73	1/1:151:0,151:0:0:151:5408:-486.849,-45.4555,0	1/1:45:0,45:0:0:45:1611:-145.277,-13.5464,0	0/1:92:55,37:55:1972:37:1296:-89.2436,0,-150.06	1/1:86:0,86:0:0:86:3085:-277.876,-25.8886,0	1/1:69:0,69:0:0:69:2461:-221.743,-20.7711,0	1/1:89:0,89:0:0:89:3200:-288.222,-26.7917,0	0/1:60:22,38:22:788:38:1368:-105.359,0,-53.183	1/1:69:0,69:0:0:69:2480:-223.453,-20.7711,0	1/1:87:0,87:0:0:87:3105:-279.648,-26.1896,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:190:94,96:94:3365:96:3441:-252.705,0,-245.869	0/1:189:96,93:96:3433:93:3305:-240.775,0,-252.287	0/1:62:53,9:53:1904:9:320:-10.4785,0,-152.974	1/1:108:1,107:1:36:107:3802:-338.781,-28.913,0	0/1:137:13,124:13:468:124:4448:-359.249,0,-1.21853	1/1:97:0,97:0:0:97:3460:-311.611,-29.1999,0	0/1:344:209,135:209:7496:135:4822:-330.58,0,-571.126	1/1:281:0,281:0:0:281:10047:-904.164,-84.5894,0	1/1:44:0,44:0:0:44:1563:-140.959,-13.2453,0	0/1:248:133,115:133:4775:115:4124:-296.688,0,-355.249	0/1:167:78,89:78:2783:89:3192:-237.231,0,-200.439	1/1:148:0,148:0:0:148:5299:-477.044,-44.5524,0	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:223:117,106:117:4195:106:3812:-276.146,0,-310.6	0/1:129:56,73:56:2008:73:2616:-196.855,0,-142.16	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:162:0,162:0:0:162:5804:-522.473,-48.7669,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:99:1,98:1:36:98:3492:-310.862,-26.2037,0	1/1:90:0,90:0:0:90:3223:-290.291,-27.0927,0	0/1:80:43,37:43:1544:37:1320:-95.0195,0,-115.171	0/1:99:55,44:55:1968:44:1559:-110.799,0,-147.593	1/1:122:0,122:0:0:122:4368:-393.294,-36.7257,0	1/1:160:0,160:0:0:160:5723:-515.186,-48.1648,0	1/1:124:0,124:0:0:124:4447:-400.4,-37.3277,0	1/1:179:0,179:0:0:179:6392:-575.368,-53.8844,0	0/1:103:49,54:49:1756:54:1923:-142.339,0,-127.318	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	1/1:62:1,61:1:36:61:2192:-193.947,-15.0656,0	0/1:28:18,10:18:644:10:360:-24.3155,0,-49.8618	0/1:118:68,50:68:2407:50:1796:-126.401,0,-181.363	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	1/1:14:1,13:1:36:13:468:-38.8614,-0.616145,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:122:58,64:58:2084:64:2287:-169.365,0,-151.104	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:228:1,227:1:36:227:8120:-727.216,-65.0366,0	0/1:227:115,112:115:4113:112:3980:-290.058,0,-302.019	1/1:96:5,91:5:180:91:3268:-277.787,-12.3468,0	0/1:74:26,48:26:924:48:1712:-132.089,0,-61.2014	0/1:178:83,95:83:2976:95:3408:-253.351,0,-214.489	0/1:104:66,38:66:2372:38:1340:-89.5907,0,-182.431	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:53:18,35:18:644:35:1243:-96.2193,0,-42.336	0/1:108:45,63:45:1612:63:2264:-171.511,0,-112.859	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:102:64,38:64:2300:38:1356:-91.6348,0,-176.556	0/1:79:34,45:34:1224:45:1611:-121.498,0,-86.6857	0/1:223:117,106:117:4192:106:3786:-273.808,0,-310.331	1/1:186:0,186:0:0:186:6684:-601.633,-55.9916,0	1/1:53:2,51:2:72:51:1832:-158.254,-9.11787,0	0/1:171:88,83:88:3164:83:2975:-216.506,0,-233.508	0/1:26:16,10:16:576:10:356:-24.5543,0,-44.3482	1/1:90:0,90:0:0:90:3224:-290.382,-27.0927,0	0/1:138:57,81:57:2044:81:2872:-217.174,0,-142.69	1/1:106:0,106:0:0:106:3800:-342.197,-31.9092,0	1/1:126:0,126:0:0:126:4516:-406.605,-37.9298,0	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	1/1:129:0,129:0:0:129:4631:-416.951,-38.8329,0	1/1:197:0,197:0:0:197:7062:-635.638,-59.3029,0	1/1:40:0,40:0:0:40:1427:-128.355,-12.0412,0	1/1:90:0,90:0:0:90:3221:-290.11,-27.0927,0	0/1:84:42,42:42:1512:42:1493:-109.377,0,-111.088	1/1:23:0,23:0:0:23:813:-73.4905,-6.92369,0	0/1:75:33,42:33:1180:42:1490:-111.816,0,-83.9308	0/1:101:69,32:69:2484:32:1152:-73.5861,0,-193.409	1/1:139:0,139:0:0:139:4978:-448.166,-41.8432,0	1/1:130:0,130:0:0:130:4672:-420.639,-39.1339,0
chr12	20860230	.	T	C	154202	PASS	AB=0.465112;ABP=56.0417;AC=145;AF=0.771277;AN=188;AO=7329;CIGAR=1X;DP=10023;DPB=10023;DPRA=0;EPP=15796.4;EPPR=5781.46;GTI=4;LEN=1;MEANALT=1.05319;MQM=59.9817;MQMR=59.9762;NS=94;NUMALT=1;ODDS=0.0959161;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=261624;QR=96491;RO=2689;RPL=7315;RPP=15796.4;RPPR=5781.46;RPR=14;RUN=1;SAF=0;SAP=15917.7;SAR=7329;SRF=0;SRP=5842.1;SRR=2689;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:71:0,71:0:0:71:2532:-228.132,-21.3731,0	0/1:105:54,51:54:1944:51:1815:-132.023,0,-143.628	0/1:124:63,61:63:2260:61:2186:-159.678,0,-166.335	1/1:230:0,230:0:0:230:8183:-736.486,-69.2369,0	0/1:47:26,21:26:936:21:737:-52.5031,0,-70.4111	0/1:47:32,15:32:1140:15:540:-34.7881,0,-88.7608	1/1:151:0,151:0:0:151:5379:-484.237,-45.4555,0	0/1:151:96,55:96:3448:55:1980:-133.019,0,-265.076	0/1:130:90,40:90:3228:40:1421:-89.0524,0,-251.608	1/1:124:0,124:0:0:124:4452:-400.849,-37.3277,0	1/1:77:1,76:1:36:76:2724:-241.805,-19.581,0	0/1:138:63,75:63:2260:75:2692:-200.982,0,-162.12	1/1:85:0,85:0:0:85:3056:-275.268,-25.5876,0	1/1:75:0,75:0:0:75:2670:-240.545,-22.5773,0	1/1:101:0,101:0:0:101:3597:-323.937,-30.404,0	0/1:83:43,40:43:1544:40:1425:-103.561,0,-114.268	1/1:52:1,51:1:36:51:1836:-161.922,-12.0553,0	1/1:51:0,51:0:0:51:1831:-165.071,-15.3525,0	1/1:59:0,59:0:0:59:2119:-190.979,-17.7608,0	0/1:159:111,48:111:3976:48:1724:-107.582,0,-310.167	0/1:193:107,86:107:3836:86:3031:-214.917,0,-287.337	0/1:51:36,15:36:1292:15:540:-33.584,0,-101.231	1/1:240:0,240:0:0:240:8587:-772.823,-72.2472,0	0/1:92:11,81:11:396:81:2895:-233.091,0,-8.28799	1/1:64:0,64:0:0:64:2288:-206.182,-19.2659,0	0/1:315:170,145:170:6116:145:5184:-371.876,0,-455.712	1/1:303:0,303:0:0:303:10806:-972.435,-91.2121,0	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:326:174,152:174:6252:152:5409:-388.801,0,-464.636	0/1:90:57,33:57:2044:33:1173:-78.7833,0,-157.139	1/1:161:0,161:0:0:161:5745:-517.166,-48.4658,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	1/1:15:0,15:0:0:15:525:-47.5781,-4.51545,0	1/1:9:0,9:0:0:9:316:-28.7789,-2.70927,0	0/1:22:7,15:7:252:15:532:-41.5904,0,-16.4063	0/1:8:6,2:6:216:2:68:-4.04947,0,-17.3823	0/1:241:125,116:125:4496:116:4152:-301.315,0,-332.258	0/1:106:50,56:50:1792:56:1999:-148.274,0,-129.653	1/1:66:0,66:0:0:66:2359:-212.568,-19.868,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:136:0,136:0:0:136:4865:-438.002,-40.9401,0	1/1:53:0,53:0:0:53:1896:-170.918,-15.9546,0	1/1:125:0,125:0:0:125:4450:-400.669,-37.6288,0	1/1:105:1,104:1:36:104:3717:-331.132,-28.0099,0	0/1:81:50,31:50:1800:31:1097:-74.6546,0,-137.899	0/1:126:55,70:55:1972:70:2510:-188.164,0,-139.766	1/1:110:1,109:1:36:109:3908:-348.315,-29.515,0	1/1:166:0,166:0:0:166:5930:-533.809,-49.971,0	1/1:83:1,82:1:36:82:2925:-259.879,-21.3872,0	1/1:141:0,140:0:0:140:4993:-449.158,-42.1442,0	0/1:133:71,61:71:2548:61:2196:-157.809,0,-189.475	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:114:0,114:0:0:114:4080:-367.386,-34.3174,0	1/1:98:0,98:0:0:98:3504:-315.141,-29.5009,0	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/1:221:88,132:88:3137:132:4721:-358.463,0,-215.324	1/1:74:0,74:0:0:74:2644:-238.207,-22.2762,0	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:126:1,125:1:36:125:4463:-398.241,-34.3315,0	0/1:123:66,57:66:2372:57:2048:-147.565,0,-176.711	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:164:0,164:0:0:164:5863:-527.779,-49.3689,0	0/1:178:97,81:97:3457:81:2866:-204.595,0,-257.758	1/1:82:1,81:1:36:81:2900:-257.637,-21.0862,0	0/1:77:46,31:46:1648:31:1107:-76.7608,0,-125.429	0/1:157:69,88:69:2472:88:3135:-235.114,0,-175.402	0/1:243:165,78:165:5928:78:2751:-174.679,0,-460.475	1/1:76:0,76:0:0:76:2719:-244.953,-22.8783,0	0/1:90:38,52:38:1356:52:1872:-141.666,0,-95.2478	0/1:69:37,32:37:1332:32:1148:-82.8588,0,-99.4113	1/1:28:0,28:0:0:28:1000:-90.3154,-8.42884,0	0/1:108:58,50:58:2088:50:1780:-127.972,0,-155.679	0/1:112:59,53:59:2116:53:1880:-135.761,0,-156.993	0/1:220:101,119:101:3632:119:4239:-315.464,0,-260.852	1/1:142:0,142:0:0:142:5028:-452.667,-42.7463,0	1/1:61:0,61:0:0:61:2183:-196.735,-18.3628,0	0/1:137:68,69:68:2436:69:2446:-179.153,0,-178.254	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	0/1:152:90,62:90:3236:62:2211:-153.498,0,-245.704	1/1:180:2,178:2:72:178:6338:-563.675,-47.3487,0	1/1:67:0,67:0:0:67:2404:-216.616,-20.169,0	1/1:100:0,100:0:0:100:3575:-321.957,-30.103,0	1/1:71:0,71:0:0:71:2534:-228.311,-21.3731,0	1/1:137:0,137:0:0:137:4886:-439.89,-41.2411,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	1/1:70:0,70:0:0:70:2506:-225.791,-21.0721,0	0/1:93:47,46:47:1669:46:1637:-119.621,0,-122.5	1/1:72:0,72:0:0:72:2580:-232.449,-21.6742,0	0/1:160:88,72:88:3168:72:2564:-182.845,0,-237.178	0/1:74:44,29:44:1584:29:1020:-69.8914,0,-120.634	1/1:212:1,211:1:36:211:7547:-675.67,-60.2201,0	1/1:155:0,155:0:0:155:5503:-495.351,-46.6597,0
chr12	20869973	.	AAA	CAA	68136.7	PASS	AB=0.483189;ABP=9.50831;AC=145;AF=0.77957;AN=186;AO=4281;CIGAR=1X2M;DP=5660;DPB=5660;DPRA=30.75;EPP=9203.78;EPPR=2962.75;GTI=3;LEN=1;MEANALT=1.06522;MQM=32.8876;MQMR=45.8009;NS=93;NUMALT=1;ODDS=0.892169;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140074;QR=47266;RO=1371;RPL=4270;RPP=9203.78;RPPR=2962.75;RPR=11;RUN=1;SAF=4281;SAP=9299.08;SAR=0;SRF=1371;SRP=2980.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1434:-117.568,-13.2453,0	0/1:41:21,20:21:716:20:654:-41.441,0,-49.7164	0/1:54:25,29:25:892:29:956:-62.2725,0,-63.5069	1/1:115:1,114:1:28:114:3803:-309.668,-31.8239,0	0/1:37:17,20:17:584:20:619:-39.4371,0,-40.2413	0/1:20:9,11:9:297:11:365:-24.4669,0,-20.4116	1/1:60:0,60:0:0:60:1986:-162.957,-18.0618,0	0/1:53:24,29:24:813:29:936:-60.9724,0,-56.4137	0/1:75:34,41:34:1175:41:1337:-87.1942,0,-82.497	1/1:52:0,52:0:0:52:1720:-141.483,-15.6536,0	1/1:40:0,40:0:0:40:1330:-109.17,-12.0412,0	0/1:92:50,41:50:1725:41:1349:-83.0709,0,-126.375	1/1:64:0,63:0:0:63:2044:-167.345,-18.9649,0	1/1:37:0,37:0:0:37:1142:-93.0435,-11.1381,0	1/1:64:0,64:0:0:64:2118:-173.671,-19.2659,0	0/1:39:24,15:24:839:15:449:-24.8813,0,-62.8297	1/1:23:0,23:0:0:23:747:-61.5439,-6.92369,0	1/1:28:0,28:0:0:28:911:-74.7026,-8.42884,0	1/1:34:0,34:0:0:34:1110:-91.0312,-10.235,0	0/1:109:52,57:52:1793:57:1913:-124.226,0,-127.21	0/1:92:55,37:55:1902:37:1168:-68.0195,0,-141.762	0/1:89:62,26:62:2156:26:882:-45.9266,0,-165.667	1/1:56:0,56:0:0:56:1873:-153.988,-16.8577,0	1/1:11:0,11:0:0:11:356:-29.6267,-3.31133,0	1/1:83:1,82:1:28:82:2607:-209.923,-22.1941,0	0/1:208:108,100:108:3740:100:3334:-211.511,0,-270.579	1/1:149:0,149:0:0:149:4702:-384,-44.8535,0	1/1:30:0,30:0:0:30:940:-76.5668,-9.0309,0	0/1:162:96,65:96:3255:65:2195:-131.735,0,-242.209	0/1:85:34,51:34:1166:51:1629:-106.634,0,-77.7376	1/1:71:0,71:0:0:71:2366:-194.058,-21.3731,0	0/0:2:2,0:2:70:0:0:0,-0.60206,-6.56957	1/1:7:0,7:0:0:7:224:-18.5543,-2.10721,0	1/1:1:0,1:0:0:1:33:-2.99908,-0.30103,0	0/1:5:3,2:3:98:2:66:-4.1931,0,-7.57174	0/1:15:8,7:8:284:7:229:-14.4959,0,-21.1245	0/1:150:85,65:85:2954:65:2142:-131.037,0,-217.592	0/1:54:31,23:31:1057:23:731:-43.758,0,-77.5933	1/1:41:0,41:0:0:41:1335:-109.343,-12.3422,0	1/1:3:0,3:0:0:3:96:-8.1175,-0.90309,0	1/1:180:0,180:0:0:180:5686:-464.536,-54.1854,0	1/1:25:0,25:0:0:25:784:-64.0751,-7.52575,0	1/1:119:0,119:0:0:119:3778:-308.864,-35.8226,0	1/1:37:0,37:0:0:37:1221:-100.666,-11.1381,0	0/1:57:22,35:22:784:35:1157:-77.9539,0,-52.9023	0/1:83:35,48:35:1171:48:1597:-106.289,0,-78.4368	1/1:50:0,50:0:0:50:1635:-133.991,-15.0515,0	1/1:96:1,95:1:28:95:3162:-257.006,-26.1043,0	1/1:53:0,53:0:0:53:1786:-146.772,-15.9546,0	1/1:89:0,89:0:0:89:2982:-244.741,-26.7917,0	0/1:34:18,16:18:625:16:539:-34.2483,0,-45.9208	1/1:10:0,10:0:0:10:328:-27.1106,-3.0103,0	1/1:212:1,211:1:27:211:6889:-561.292,-61.2155,0	1/1:40:0,40:0:0:40:1331:-109.752,-12.0412,0	.:.:.:.:.:.:.:.	0/1:66:28,38:28:953:38:1202:-78.3513,0,-64.7882	1/1:22:0,22:0:0:22:740:-60.9478,-6.62266,0	0/1:11:4,7:4:130:7:236:-16.4208,0,-8.63833	1/1:10:0,10:0:0:10:333:-27.7665,-3.0103,0	1/1:58:0,58:0:0:58:1847:-150.813,-17.4597,0	0/1:92:39,52:39:1367:52:1744:-114.312,0,-94.6228	1/1:2:0,2:0:0:2:68:-5.88821,-0.60206,0	1/1:51:0,51:0:0:51:1718:-141.274,-15.3525,0	0/1:112:61,51:61:2098:51:1718:-107.399,0,-153.679	1/1:26:0,26:0:0:26:835:-68.4001,-7.82678,0	0/1:32:12,20:12:406:20:680:-46.46,0,-26.937	0/1:84:35,49:35:1218:49:1630:-108.686,0,-83.7929	0/1:84:68,16:68:2347:16:542:-19.5488,0,-183.991	1/1:24:0,24:0:0:24:748:-61.3449,-7.22472,0	0/1:64:40,24:40:1372:24:789:-45.6707,0,-101.97	0/1:42:17,25:17:602:25:821:-55.0561,0,-41.2542	1/1:11:0,11:0:0:11:372:-30.8088,-3.31133,0	0/1:89:42,47:42:1436:47:1502:-96.2082,0,-101.513	0/1:58:29,29:29:1003:29:954:-61.2015,0,-71.9333	0/1:89:30,59:30:1016:59:1883:-126.991,0,-63.5335	1/1:121:0,121:0:0:121:4058:-332.658,-36.4246,0	1/1:97:0,97:0:0:97:3182:-260.761,-29.1999,0	0/1:26:13,13:13:437:13:429:-27.5624,0,-31.092	0/1:7:2,5:2:72:5:165:-11.6886,0,-4.65416	1/1:65:0,65:0:0:65:2063:-168.625,-19.567,0	0/1:67:29,38:29:1014:38:1222:-80.0392,0,-70.5066	1/1:121:1,120:1:36:120:4005:-326.56,-33.776,0	1/1:48:0,45:0:0:45:1505:-123.507,-13.5464,0	1/1:55:0,55:0:0:55:1850:-152.071,-16.5567,0	1/1:54:0,54:0:0:54:1787:-146.509,-16.2556,0	1/1:101:0,101:0:0:101:3355:-273.74,-30.404,0	1/1:20:0,20:0:0:20:654:-53.7832,-6.0206,0	1/1:55:0,55:0:0:55:1784:-146.046,-16.5567,0	0/1:57:30,27:30:1058:27:880:-55.0682,0,-77.1352	1/1:33:0,33:0:0:33:1052:-86.146,-9.93399,0	0/1:70:45,25:45:1555:25:774:-41.8929,0,-117.21	0/1:43:27,16:27:939:16:544:-31.992,0,-70.992	1/1:47:0,47:0:0:47:1541:-126.581,-14.1484,0	1/1:66:0,66:0:0:66:2156:-177.278,-19.868,0
chr12	20891921	.	T	C	18950.7	PASS	AB=0.508972;ABP=4.60778;AC=42;AF=0.223404;AN=188;AO=1166;CIGAR=1X;DP=4464;DPB=4464;DPRA=1.31609;EPP=2534.95;EPPR=7162.35;GTI=1;LEN=1;MEANALT=1;MQM=59.9794;MQMR=59.9873;NS=94;NUMALT=1;ODDS=0.709148;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=41131;QR=117146;RO=3297;RPL=0;RPP=2534.95;RPPR=7162.35;RPR=1166;RUN=1;SAF=0;SAP=2534.95;SAR=1166;SRF=0;SRP=7162.35;SRR=3297;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:64:35,29:35:1239:29:1028:-73.5671,0,-92.5477	0/1:69:36,33:36:1280:33:1119:-80.2365,0,-94.7184	0/0:46:46,0:46:1632:0:0:0,-13.8474,-147.169	0/1:50:23,27:23:815:27:952:-70.9437,0,-58.6193	0/1:15:8,7:8:288:7:252:-18.5135,0,-21.752	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/1:66:30,36:30:1063:36:1260:-93.8316,0,-76.1128	0/1:52:28,24:28:996:24:854:-61.5273,0,-74.3013	0/0:73:73,0:73:2564:0:0:0,-21.9752,-231.01	0/0:15:15,0:15:528:0:0:0,-4.51545,-47.8514	0/1:44:26,18:26:919:18:634:-44.1418,0,-69.7808	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/0:39:39,0:39:1387:0:0:0,-11.7402,-125.128	0/1:39:20,19:20:708:19:659:-47.8921,0,-52.3054	0/0:43:43,0:43:1528:0:0:0,-12.9443,-137.813	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/0:28:28,0:28:986:0:0:0,-8.42884,-89.0522	0/1:109:52,57:52:1847:57:2035:-150.609,0,-133.611	0/1:72:33,39:33:1176:39:1371:-102.014,0,-84.4736	0/1:67:25,42:25:900:42:1491:-114.315,0,-61.152	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:63:60,3:60:2140:3:108:0,-8.88972,-182.793	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:157:84,73:84:2972:73:2575:-184.736,0,-220.451	0/0:107:106,0:106:3775:0:0:0,-31.9092,-339.631	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:118:43,75:43:1536:75:2665:-204.554,0,-103.012	0/1:61:26,35:26:932:35:1248:-94.262,0,-65.836	0/0:63:63,0:63:2215:0:0:0,-18.9649,-199.611	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:5:2,3:2:68:3:99:-7.73143,0,-4.95256	0/1:10:1,9:1:36:9:311:-25.3134,0,-0.587975	0/1:121:69,52:69:2458:52:1826:-128.193,0,-185.049	0/1:91:52,39:52:1868:39:1396:-98.5454,0,-141.006	0/0:31:31,0:31:1091:0:0:0,-9.33193,-98.4987	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:38:38,0:38:1347:0:0:0,-11.4391,-121.529	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/0:75:75,0:75:2661:0:0:0,-22.5772,-239.735	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7139	0/1:43:15,28:15:536:28:992:-76.6501,0,-35.6305	0/1:38:24,14:24:844:14:500:-33.897,0,-64.8398	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.986	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	0/0:67:67,0:67:2373:0:0:0,-20.169,-213.827	0/1:120:73,47:73:2575:47:1663:-113.833,0,-195.877	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:61:26,35:26:928:35:1239:-93.4508,0,-65.4754	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.134	0/1:10:8,2:8:288:2:72:-3.82642,0,-23.2571	0/0:8:8,0:8:276:0:0:0,-2.40824,-25.1752	0/0:49:49,0:49:1736:0:0:0,-14.7505,-156.525	0/1:98:43,55:43:1510:55:1912:-142.853,0,-106.691	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:113:113,0:113:3999:0:0:0,-34.0164,-360.101	0/1:76:42,34:42:1488:34:1211:-86.4172,0,-111.336	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:46:18,28:18:644:28:992:-75.747,0,-44.4432	0/1:63:34,29:34:1224:29:1031:-74.1377,0,-91.5022	0/1:56:21,35:21:726:35:1226:-93.7846,0,-48.8008	0/0:15:15,0:15:519:0:0:0,-4.51545,-47.0367	0/1:22:8,14:8:279:14:474:-36.3596,0,-18.8249	0/1:54:30,24:30:1076:24:852:-60.7448,0,-80.8972	0/0:14:14,0:14:492:0:0:0,-4.21442,-44.6123	0/1:59:29,30:29:1032:30:1076:-79.3921,0,-75.4327	0/1:29:17,12:17:595:12:423:-29.6752,0,-45.1468	0/1:61:38,23:38:1364:23:811:-54.9471,0,-104.698	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:42:23,19:23:820:19:660:-47.0773,0,-61.4793	0/1:7:3,4:3:108:4:135:-10.3753,0,-7.96796	0/0:52:52,0:52:1827:0:0:0,-15.6536,-164.707	0/1:47:19,28:19:675:28:1000:-76.167,0,-46.9285	0/0:117:117,0:117:4160:0:0:0,-35.2205,-374.583	0/0:60:60,0:60:2114:0:0:0,-18.0618,-190.528	0/0:46:46,0:46:1622:0:0:0,-13.8474,-146.267	0/0:55:55,0:55:1939:0:0:0,-16.5566,-174.786	0/0:84:84,0:84:2994:0:0:0,-25.2865,-269.691	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:33:13,20:13:468:20:703:-53.6595,0,-32.5257	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:63:34,29:34:1216:29:1014:-72.6051,0,-90.7817	0/1:33:4,29:4:144:29:1010:-81.2756,0,-3.37963	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/0:45:45,0:45:1588:0:0:0,-13.5463,-143.208
chr12	20900552	.	C	T	373304	PASS	AB=0.481441;ABP=32.9136;AC=146;AF=0.776596;AN=188;AO=13971;CIGAR=1X;DP=19201;DPB=19201;DPRA=0;EPP=30332;EPPR=11346.8;GTI=4;LEN=1;MEANALT=1.05319;MQM=59.9728;MQMR=59.9904;NS=94;NUMALT=1;ODDS=3.09927;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=498215;QR=183765;RO=5224;RPL=7772;RPP=387.588;RPPR=66.8842;RPR=6199;RUN=1;SAF=7773;SAP=388.567;SAR=6198;SRF=2416;SRP=66.8842;SRR=2808;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:100:1,99:1:36:99:3509:-312.423,-26.5047,0	0/1:446:207,238:207:7274:238:8513:-631.848,0,-520.406	0/1:285:139,146:139:4933:146:5173:-379.921,0,-358.33	1/1:372:5,367:5:180:367:13092:-1161.43,-95.4311,0	0/1:115:87,28:87:3057:28:1008:-56.4179,0,-240.74	0/1:124:46,78:46:1615:78:2758:-211.132,0,-108.311	1/1:283:0,283:0:0:283:10102:-909.114,-85.1915,0	0/1:391:185,204:185:6551:204:7234:-533.66,0,-472.218	0/1:279:127,152:127:4438:152:5382:-400.527,0,-315.606	1/1:299:3,296:3:108:296:10551:-939.412,-79.9328,0	1/1:134:0,134:0:0:134:4774:-429.803,-40.338,0	0/1:162:78,84:78:2721:84:3014:-222.688,0,-196.366	1/1:169:0,169:0:0:169:6029:-542.716,-50.8741,0	1/1:86:2,84:2:72:84:2966:-260.324,-19.0519,0	1/1:183:0,182:0:0:182:6483:-583.237,-54.7875,0	0/1:103:66,37:66:2297:37:1323:-88.3652,0,-175.983	1/1:165:0,165:0:0:165:5891:-530.301,-49.67,0	1/1:176:2,174:2:72:174:6180:-549.454,-46.1446,0	1/1:133:0,133:0:0:133:4739:-426.668,-40.037,0	0/1:520:241,279:241:8455:279:9981:-741.691,0,-604.428	0/1:230:170,60:170:5888:60:2132:-122.909,0,-460.745	0/1:223:151,72:151:5279:72:2573:-164.689,0,-408.126	1/1:243:0,243:0:0:243:8683:-781.462,-73.1503,0	0/1:138:15,123:15:536:123:4395:-354.179,0,-7.03267	1/1:84:0,84:0:0:84:2995:-269.781,-25.2865,0	0/1:726:371,354:371:13144:354:12650:-919.718,0,-964.17	1/1:304:2,302:2:72:302:10796:-964.685,-84.6764,0	1/1:52:1,51:1:36:51:1805:-159.13,-12.0553,0	0/1:570:287,283:287:10204:283:10088:-736.254,0,-746.71	0/1:187:118,69:118:4164:69:2458:-165.181,0,-318.651	1/1:279:1,278:1:36:278:9929:-889.95,-80.3891,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:11:1,10:1:32:10:360:-29.545,-0.112017,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:36:22,14:22:761:14:500:-34.4991,0,-57.9698	0/1:475:212,263:212:7424:263:9368:-700.085,0,-525.229	0/1:213:140,73:140:4878:73:2604:-170.487,0,-375.057	1/1:147:0,147:0:0:147:5177:-466.068,-44.2514,0	0/1:10:4,6:4:140:6:216:-16.7802,0,-9.93428	1/1:195:0,195:0:0:195:6938:-624.486,-58.7009,0	1/1:61:0,61:0:0:61:2173:-195.835,-18.3628,0	1/1:170:4,166:4:140:166:5897:-517.872,-38.2305,0	1/1:226:0,226:0:0:226:8072:-726.474,-68.0328,0	0/1:186:90,96:90:3173:96:3428:-252.743,0,-229.802	0/1:191:84,107:84:2970:107:3818:-286.32,0,-210.037	1/1:301:2,299:2:72:299:10675:-953.812,-83.7733,0	1/1:329:1,328:1:36:328:11709:-1050.08,-95.4406,0	1/1:244:1,243:1:36:243:8705:-779.841,-69.853,0	1/1:327:2,325:2:72:325:11618:-1038.65,-91.6001,0	0/1:359:178,181:178:6270:181:6422:-470,0,-456.331	1/1:19:0,19:0:0:19:673:-60.896,-5.71957,0	1/1:333:3,330:3:108:330:11807:-1052.41,-90.1678,0	1/1:114:0,114:0:0:114:4087:-368.015,-34.3174,0	0/1:24:6,18:6:212:18:648:-51.4272,0,-12.2001	0/1:211:144,67:144:5097:67:2369:-149.95,0,-395.361	1/1:61:0,61:0:0:61:2178:-196.285,-18.3628,0	0/1:9:2,7:2:68:7:252:-20.3197,0,-3.74844	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:33:0,33:0:0:33:1177:-106.227,-9.93399,0	0/1:243:124,119:124:4324:119:4255:-309.978,0,-316.187	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:290:0,290:0:0:290:10368:-933.042,-87.2987,0	0/1:533:251,282:251:8879:282:10109:-749.291,0,-638.655	1/1:89:1,88:1:36:88:3146:-279.766,-23.1934,0	0/1:159:84,75:84:2950:75:2687:-194.21,0,-217.87	0/1:409:210,199:210:7438:199:7112:-517.016,0,-546.348	0/1:292:195,97:195:6861:97:3441:-221.999,0,-529.665	1/1:37:1,36:1:32:36:1296:-113.745,-7.9388,0	0/1:188:82,106:82:2923:106:3755:-281.553,0,-206.694	0/1:218:106,112:106:3668:112:3998:-294.385,0,-264.7	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:123:53,70:53:1825:70:2474:-185.886,0,-127.497	0/1:218:121,97:121:4262:97:3473:-247.155,0,-318.132	0/1:293:192,101:192:6770:101:3597:-235.734,0,-521.179	1/1:350:1,349:1:36:349:12487:-1120.06,-101.762,0	1/1:200:3,197:3:108:197:7032:-622.867,-50.1308,0	0/1:280:122,158:122:4291:158:5672:-426.301,0,-302.081	0/1:25:10,15:10:360:15:527:-40.2344,0,-25.2186	1/1:151:0,151:0:0:151:5409:-486.937,-45.4555,0	0/1:262:130,132:130:4601:132:4700:-344.278,0,-335.386	1/1:530:5,524:5:180:524:18725:-1667.69,-143.053,0	1/1:269:1,268:1:36:268:9540:-854.958,-77.3788,0	1/1:167:0,167:0:0:167:5959:-536.418,-50.272,0	1/1:226:0,226:0:0:226:8015:-721.372,-68.0328,0	1/1:283:0,283:0:0:283:10057:-905.067,-85.1915,0	1/1:125:0,125:0:0:125:4457:-401.3,-37.6288,0	1/1:172:0,172:0:0:172:6093:-548.473,-51.7772,0	0/1:193:99,94:99:3466:94:3360:-244.518,0,-254.053	1/1:84:0,84:0:0:84:2992:-269.488,-25.2865,0	0/1:146:93,53:93:3187:53:1895:-126.877,0,-243.104	0/1:196:135,61:135:4731:61:2179:-137.374,0,-366.95	1/1:229:1,228:1:36:228:8108:-726.141,-65.3376,0	1/1:287:1,286:1:36:286:10140:-908.939,-82.7973,0
chr12	21003158	.	T	C	55440.7	PASS	AB=0.37091;ABP=1055.87;AC=41;AF=0.218085;AN=188;AO=2726;CIGAR=1X;DP=16369;DPB=16369;DPRA=1.22769;EPP=26.0314;EPPR=5019.74;GTI=2;LEN=1;MEANALT=1.01818;MQM=59.7212;MQMR=49.1153;NS=94;NUMALT=1;ODDS=6.58704;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97118;QR=487393;RO=13642;RPL=2722;RPP=5887.75;RPPR=29253.9;RPR=4;RUN=1;SAF=1274;SAP=28.2491;SAR=1452;SRF=3971;SRP=5174.62;SRR=9671;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:75:73,2:73:2592:2:72:0,-15.7405,-219.208	0/1:217:156,61:156:5581:61:2184:-131.491,0,-377.576	0/1:243:129,114:129:4620:114:4073:-293.485,0,-321.622	0/0:263:263,0:263:9372:0:0:0,-79.1709,-736.884	0/1:65:46,19:46:1641:19:675:-41.51,0,-107.382	0/1:79:47,32:47:1684:32:1148:-79.8476,0,-112.349	0/0:136:135,1:135:4817:1:36:0,-37.3418,-384.916	0/1:250:181,69:181:6452:69:2460:-146.383,0,-454.04	0/1:163:105,58:105:3755:58:2080:-138.4,0,-280.542	0/0:211:211,0:211:7517:0:0:0,-63.5173,-566.535	0/0:158:158,0:158:5624:0:0:0,-47.5627,-452.197	0/1:223:129,94:129:4614:94:3346:-234.211,0,-319.126	0/0:227:227,0:227:8131:0:0:0,-68.3338,-676.641	0/0:252:252,0:252:9023:0:0:0,-75.8596,-736.407	0/0:227:226,1:226:8111:1:36:0,-64.7355,-671.361	0/1:157:94,63:94:3368:63:2233:-153.956,0,-240.584	0/0:218:218,0:218:7768:0:0:0,-65.6245,-644.076	0/0:174:174,0:174:6235:0:0:0,-52.3792,-527.423	0/0:96:96,0:96:3410:0:0:0,-28.8989,-289.091	0/1:259:162,97:162:5775:97:3433:-231.178,0,-370.731	0/1:234:135,99:135:4788:99:3524:-246.928,0,-321.14	0/1:101:76,25:76:2713:25:879:-49.0228,0,-174.886	0/0:131:131,0:131:4683:0:0:0,-39.4349,-401.857	0/0:158:149,9:149:5340:9:320:0,-18.4204,-421.728	0/0:85:85,0:85:3032:0:0:0,-25.5875,-260.849	0/1:395:271,124:271:9664:124:4410:-278.107,0,-643.144	0/0:320:319,1:319:11423:1:36:0,-92.7313,-939.344	0/0:77:77,0:77:2759:0:0:0,-23.1793,-223.554	0/1:251:167,84:167:5975:84:2985:-193.323,0,-389.836	0/1:208:156,52:156:5592:52:1849:-104.039,0,-362.334	0/0:179:179,0:179:6398:0:0:0,-53.8844,-520.324	0/1:5:3,2:3:104:2:72:-5.25817,0,-8.19766	0/0:12:12,0:12:432:0:0:0,-3.61236,-37.8481	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:10:4,6:4:144:6:216:-16.7802,0,-8.73139	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:478:292,186:292:10453:186:6624:-452.336,0,-677.227	0/1:156:110,46:110:3932:46:1612:-98.3966,0,-253.003	0/0:152:152,0:152:5414:0:0:0,-45.7566,-452.363	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:316:316,0:316:11282:0:0:0,-95.1255,-925.1	0/0:66:66,0:66:2376:0:0:0,-19.868,-201.792	0/0:230:228,2:228:8144:2:72:0,-62.4002,-672.309	0/0:174:174,0:174:6203:0:0:0,-52.3792,-523.696	0/1:179:100,79:100:3583:79:2796:-197.971,0,-246	0/1:106:73,33:73:2588:33:1180:-74.5989,0,-185.548	0/0:155:152,3:152:5436:3:107:0,-37.8209,-461.061	0/0:256:255,1:255:9116:1:36:0,-73.4654,-729.862	0/0:166:166,0:166:5927:0:0:0,-49.971,-453.558	0/0:265:265,0:265:9520:0:0:0,-79.7729,-706.913	0/1:160:108,52:108:3868:52:1864:-119.846,0,-232.625	0/0:6:6,0:6:216:0:0:0,-1.80618,-14.7979	0/0:274:274,0:274:9756:0:0:0,-82.4822,-790.057	0/0:89:89,0:89:3192:0:0:0,-26.7917,-219.182	0/1:11:5,6:5:180:6:216:-16.4792,0,-11.2406	0/1:194:119,75:119:4242:75:2675:-182.53,0,-288.394	0/0:61:61,0:61:2176:0:0:0,-18.3628,-189.847	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.1819	0/0:22:22,0:22:788:0:0:0,-6.62266,-69.3438	0/0:143:143,0:143:5136:0:0:0,-43.0473,-420.335	0/1:252:153,99:153:5492:99:3532:-242.227,0,-342.961	0/0:9:9,0:9:311:0:0:0,-2.70927,-28.3237	0/0:442:440,2:440:15677:2:72:0,-126.219,-1069.39	0/1:266:177,89:177:6340:89:3177:-206.079,0,-424.479	0/0:125:123,2:123:4401:2:72:0,-30.7924,-305.191	0/1:119:73,46:73:2600:46:1636:-111.599,0,-181.008	0/1:223:146,77:146:5224:77:2760:-181.194,0,-357.203	0/1:269:128,141:128:4573:141:5012:-370.231,0,-288.756	0/0:80:80,0:80:2868:0:0:0,-24.0824,-234.81	0/1:130:82,48:82:2931:48:1716:-115.527,0,-208.049	0/1:250:161,89:161:5768:89:3187:-210.688,0,-348.902	0/0:33:33,0:33:1184:0:0:0,-9.93399,-92.7283	0/1:100:62,38:62:2201:38:1347:-91.4265,0,-142.538	0/1:178:126,52:126:4502:52:1860:-114.064,0,-314.472	0/1:279:185,94:185:6618:94:3344:-217.072,0,-464.586	0/0:292:290,1:290:10371:1:36:0,-84.3613,-774.449	0/0:123:123,0:123:4384:0:0:0,-37.0267,-338.834	0/1:279:168,111:168:5994:111:3971:-273.263,0,-401.594	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:205:205,0:205:7334:0:0:0,-61.7111,-602.881	0/1:176:109,67:109:3872:67:2388:-160.612,0,-264.068	0/0:286:286,0:286:10222:0:0:0,-86.0946,-874.799	0/0:276:275,1:275:9831:1:32:0,-79.885,-757.66	0/0:219:219,0:219:7818:0:0:0,-65.9256,-643.155	0/0:195:195,0:195:6982:0:0:0,-58.7008,-567.286	0/0:357:357,0:357:12753:0:0:0,-107.468,-1049.2	0/0:110:110,0:110:3916:0:0:0,-33.1133,-313.124	0/0:209:209,0:209:7436:0:0:0,-62.9153,-629.344	0/1:175:106,69:106:3804:69:2456:-168.607,0,-269.603	0/0:107:106,1:106:3791:1:29:0,-30.2612,-320.259	0/1:203:133,70:133:4747:70:2496:-163.776,0,-317.854	0/1:209:91,118:91:3238:118:4206:-315.782,0,-199.534	0/0:303:302,1:302:10726:1:36:0,-87.6138,-816.397	0/0:337:337,0:337:12063:0:0:0,-101.447,-993.898
chr12	21003161	.	T	C	11249.1	PASS	AB=0.308408;ABP=4015.28;AC=81;AF=0.430851;AN=188;AO=4053;CIGAR=1X;DP=13900;DPB=13900;DPRA=32.6121;EPP=8682.81;EPPR=4137.31;GTI=36;LEN=1;MEANALT=1.04545;MQM=24.2302;MQMR=59.6954;NS=94;NUMALT=1;ODDS=0.0731209;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=144694;QR=352688;RO=9843;RPL=4039;RPP=8682.81;RPPR=21194.8;RPR=14;RUN=1;SAF=0;SAP=8803.99;SAR=4053;SRF=2736;SRP=4217.92;SRR=7107;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:24:17,7:17:612:7:248:-8.15545,0,-48.1864	0/1:190:108,82:108:3856:82:2917:-147.75,0,-290.011	0/1:122:92,30:92:3300:30:1063:-39.2818,0,-260.405	0/1:259:189,70:189:6756:70:2491:-42.8386,0,-530.022	0/1:43:22,21:22:792:21:756:-34.6081,0,-57.8024	0/1:59:37,22:37:1332:22:788:-37.4191,0,-102.421	0/1:133:104,29:104:3732:29:1032:-8.59418,0,-296.025	0/1:149:74,74:74:2652:74:2641:-143.445,0,-194.064	0/1:83:71,12:71:2522:12:428:-5.49427,0,-202.179	0/1:218:139,78:139:4980:78:2788:-71.5638,0,-382.665	0/1:159:123,36:123:4404:36:1271:-13.6646,0,-348.602	0/1:127:91,36:91:3272:36:1296:-49.545,0,-256.386	0/1:143:92,51:92:3292:51:1828:-67.4208,0,-253.452	0/1:205:151,54:151:5421:54:1932:-42.3646,0,-424.835	0/0:224:188,36:188:6764:36:1284:0,-4.51898,-544.024	0/1:104:85,19:85:3060:19:684:-15.1213,0,-244.267	0/1:190:137,53:137:4915:53:1900:-58.3002,0,-385.281	0/1:149:118,31:118:4219:31:1095:-21.3697,0,-333.992	0/1:70:52,18:52:1864:18:648:-20.5819,0,-146.96	0/1:258:185,73:185:6640:73:2616:-87.204,0,-519.742	0/1:149:105,44:105:3752:44:1580:-56.9454,0,-292.727	0/1:105:51,54:51:1827:54:1921:-101.417,0,-133.102	0/0:131:117,14:117:4208:14:504:0,-15.596,-355.045	0/1:104:80,24:80:2876:24:864:-16.5357,0,-227.346	0/1:52:43,9:43:1533:9:324:-1.45644,0,-122.607	0/1:389:280,109:280:10039:109:3895:-126.564,0,-786.331	0/1:194:130,64:130:4668:64:2292:-64.4914,0,-361.395	0/1:53:33,20:33:1188:20:716:-23.4227,0,-89.9702	0/1:253:185,68:185:6586:68:2417:-74.0459,0,-516.573	0/1:186:88,98:88:3156:98:3486:-183.621,0,-227.327	0/1:177:140,37:140:5004:37:1332:-10.9223,0,-396.364	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.67248	0/1:6:5,1:5:180:1:36:-0.280405,0,-14.7459	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:2:0,2:0:0:2:72:-5.22231,-0.60206,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:479:366,113:366:13096:113:4043:-102.638,0,-1034.18	0/1:116:50,66:50:1796:66:2347:-121.825,0,-126.804	0/1:113:83,30:83:2984:30:1064:-30.4204,0,-234.71	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:245:177,68:177:6351:68:2430:-56.6848,0,-496.183	0/1:45:32,13:32:1148:13:461:-13.655,0,-90.0831	0/1:134:94,40:94:3380:40:1436:-36.954,0,-264.076	0/0:169:146,23:146:5244:23:824:0,-9.59941,-430.82	0/0:179:157,22:157:5603:22:792:0,-2.9883,-453.459	0/1:106:87,19:87:3095:19:674:-14.1978,0,-246.852	0/1:93:72,21:72:2575:21:755:-18.8659,0,-203.296	0/1:262:203,59:203:7240:59:2120:-21.5539,0,-572.763	0/1:165:115,50:115:4120:50:1779:-35.6795,0,-321.295	0/1:269:169,100:169:6068:100:3573:-89.3089,0,-464.271	0/1:163:107,56:107:3820:56:2004:-64.3446,0,-294.888	0/1:5:2,3:2:72:3:108:-3.51603,0,-5.33157	0/1:196:112,84:112:4028:84:2988:-123.903,0,-302.832	0/1:91:54,37:54:1924:37:1328:-25.5558,0,-146.021	0/1:8:5,3:5:176:3:104:-5.60314,0,-13.7758	0/1:110:66,44:66:2372:44:1558:-73.5899,0,-180.57	0/0:62:56,6:56:2008:6:216:0,-6.89134,-169.221	0/1:5:3,2:3:108:2:72:-2.88414,0,-8.57002	0/0:21:20,1:20:716:1:36:0,-4.82496,-63.271	0/1:118:82,36:82:2952:36:1296:-35.7342,0,-230.389	0/1:249:173,76:173:6188:76:2721:-97.9479,0,-480.076	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:445:251,194:251:8942:194:6919:-153.352,0,-670.531	0/1:266:181,85:181:6484:85:3056:-128.697,0,-503.381	0/1:100:35,65:35:1252:65:2305:-95.8176,0,-82.3241	0/1:120:93,27:93:3340:27:968:-33.3457,0,-264.157	0/1:227:174,53:174:6220:53:1900:-56.8783,0,-491.117	0/1:272:209,63:209:7500:63:2232:-75.9709,0,-593.102	0/1:51:34,17:34:1224:17:612:-17.7627,0,-95.1145	0/1:99:72,27:72:2588:27:953:-38.3802,0,-203.299	0/1:251:172,79:172:6126:79:2826:-83.8208,0,-475.104	0/1:34:25,9:25:892:9:320:-4.99525,0,-70.3647	0/1:63:29,34:29:1040:34:1208:-64.5297,0,-74.8933	0/1:100:49,50:49:1760:50:1784:-96.1173,0,-128.585	0/1:204:138,66:138:4952:66:2360:-103.698,0,-383.612	0/1:286:188,98:188:6748:98:3520:-80.0854,0,-520.737	0/1:98:46,52:46:1656:52:1808:-84.382,0,-119.799	0/1:187:109,78:109:3912:78:2777:-139.873,0,-295.638	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:132:89,43:89:3183:43:1544:-44.4043,0,-246.074	0/1:115:70,45:70:2508:45:1608:-79.0341,0,-189.766	0/0:285:253,31:253:9056:31:1108:0,-29.7617,-758.714	0/1:271:188,83:188:6752:83:2953:-62.2783,0,-526.116	0/0:214:177,37:177:6344:37:1324:0,-1.6335,-508.252	0/1:197:157,40:157:5628:40:1424:-7.19114,0,-447.216	0/1:354:289,65:289:10372:65:2324:-5.01569,0,-826.789	0/1:86:48,38:48:1728:38:1364:-56.5596,0,-129.79	0/1:128:93,35:93:3344:35:1241:-37.9216,0,-262.454	0/1:100:74,26:74:2656:26:924:-34.7434,0,-209.136	0/1:79:64,15:64:2304:15:529:-4.96329,0,-182.92	0/1:152:101,51:101:3624:51:1820:-74.3951,0,-280.545	0/1:203:163,40:163:5839:40:1432:-40.0206,0,-464.487	0/1:307:208,99:208:7460:99:3530:-80.1789,0,-579.025	0/1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chr12	21036719	.	A	C	116006	PASS	AB=0.497519;ABP=3.55977;AC=42;AF=0.223404;AN=188;AO=5156;CIGAR=1X;DP=22312;DPB=22312;DPRA=1.402;EPP=11181.8;EPPR=37191.7;GTI=0;LEN=1;MEANALT=1.10714;MQM=59.9554;MQMR=59.9536;NS=94;NUMALT=1;ODDS=0.756231;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182504;QR=613066;RO=17138;RPL=2601;RPP=3.90146;RPPR=15.1867;RPR=2555;RUN=1;SAF=2603;SAP=4.06319;SAR=2553;SRF=8417;SRP=14.7199;SRR=8721;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:149:149,0:149:5324:0:0:0,-44.8535,-478.516	0/1:298:154,144:154:5521:144:5114:-370.66,0,-407.306	0/1:301:140,161:140:5009:161:5686:-421.252,0,-360.31	0/0:512:511,1:511:18295:1:36:0,-150.529,-1642.51	0/1:194:93,100:93:3336:100:3548:-261.11,0,-242.036	0/1:141:69,72:69:2472:72:2544:-186.765,0,-180.289	0/0:462:460,2:460:16425:2:72:0,-132.239,-1471.05	0/1:335:162,173:162:5816:173:6126:-450.597,0,-422.704	0/1:248:125,123:125:4488:123:4370:-318.818,0,-329.432	0/0:311:311,0:311:11131:0:0:0,-93.6203,-1001.55	0/0:156:156,0:156:5569:0:0:0,-46.9607,-500.844	0/1:190:97,93:97:3463:93:3277:-237.939,0,-254.687	0/0:224:224,0:224:8002:0:0:0,-67.4307,-720.191	0/0:164:162,0:162:5785:0:0:0,-48.7669,-520.372	0/0:217:217,0:217:7779:0:0:0,-65.3235,-700.134	0/1:121:57,60:57:2048:60:2102:-153.867,0,-148.821	0/0:163:162,1:162:5791:1:36:0,-45.4696,-517.698	0/0:161:161,0:161:5772:0:0:0,-48.4658,-519.594	0/0:126:126,0:126:4519:0:0:0,-37.9298,-406.876	0/1:566:295,271:295:10591:271:9590:-692.678,0,-782.638	0/1:387:203,184:203:7274:184:6505:-469.042,0,-538.205	0/1:190:57,133:57:2048:133:4733:-368.934,0,-127.396	0/0:225:222,3:222:7918:3:97:0,-58.6818,-703.328	0/0:343:327,16:327:11676:16:557:0,-52.7977,-1000.06	0/0:204:202,0:202:7182:0:0:0,-60.8081,-646.119	0/1:711:345,366:345:12367:366:12991:-954.848,0,-898.832	0/0:363:362,0:362:12971:0:0:0,-108.973,-1166.83	0/0:97:97,0:97:3475:0:0:0,-29.1999,-312.959	0/1:525:243,282:243:8714:282:9972:-739.228,0,-626.207	0/1:225:128,97:128:4596:97:3458:-243.7,0,-346.067	0/0:309:307,1:307:10943:1:36:0,-89.4788,-981.171	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:14:11,3:11:387:3:99:-5.02216,0,-30.9515	0/1:517:258,259:258:9222:259:9101:-663.446,0,-674.315	0/1:286:164,122:164:5840:122:4299:-300.986,0,-439.619	0/0:180:180,0:180:6431:0:0:0,-54.1854,-578.87	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:406:406,0:406:14531:0:0:0,-122.218,-1307.53	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.809	0/0:371:370,0:370:13246:0:0:0,-111.381,-1191.56	0/0:243:242,1:242:8635:1:36:0,-69.552,-773.545	0/1:171:95,76:95:3395:76:2720:-193.565,0,-254.289	0/1:258:148,110:148:5291:110:3910:-274.429,0,-398.659	0/0:283:283,0:283:10143:0:0:0,-85.1915,-912.789	0/0:390:389,1:389:13941:1:36:0,-113.803,-1250.86	0/0:191:191,0:191:6819:0:0:0,-57.4967,-613.666	0/0:314:314,0:314:11230:0:0:0,-94.5234,-1010.59	0/1:412:207,205:207:7399:205:7287:-531.858,0,-541.923	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:382:379,3:379:13588:3:108:0,-104.918,-1212.62	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.564	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/1:325:167,158:167:5958:158:5578:-404.292,0,-438.416	0/0:146:145,1:145:5189:1:36:0,-40.3521,-463.094	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:226:225,0:225:8022:0:0:0,-67.7317,-721.64	0/1:250:134,116:134:4772:116:4109:-294.74,0,-354.38	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.3887	0/0:336:334,0:334:11936:0:0:0,-100.544,-1073.73	0/1:449:249,199:249:8912:199:7077:-501.753,0,-666.839	0/0:205:196,9:196:7012:9:309:0,-33.5704,-603	0/1:187:102,85:102:3655:85:2998:-213.759,0,-272.86	0/1:415:223,192:223:7971:192:6806:-487.687,0,-592.483	0/1:291:105,186:105:3753:186:6643:-510.35,0,-250.369	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:233:119,114:119:4272:114:4052:-294.728,0,-314.517	0/1:206:111,95:111:3974:95:3332:-238.086,0,-295.832	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.085	0/1:160:82,78:82:2932:78:2750:-199.576,0,-215.95	0/1:180:97,83:97:3476:83:2947:-211.279,0,-258.858	0/1:427:219,208:219:7811:208:7335:-531.653,0,-574.477	0/0:357:357,0:357:12802:0:0:0,-107.468,-1151.98	0/0:270:270,0:270:9646:0:0:0,-81.2781,-868.081	0/1:201:102,98:102:3648:98:3474:-252.305,0,-267.958	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/0:314:314,0:314:11237:0:0:0,-94.5234,-1011.21	0/1:300:131,169:131:4653:169:5963:-446.473,0,-328.623	0/0:749:748,1:748:26767:1:36:0,-221.873,-2404.38	0/0:276:276,0:276:9876:0:0:0,-83.0843,-888.78	0/0:182:182,0:182:6520:0:0:0,-54.7875,-586.883	0/0:258:257,1:257:9194:1:36:0,-74.0675,-823.458	0/0:369:368,1:368:13121:1:36:0,-107.482,-1177.1	0/0:99:99,0:99:3547:0:0:0,-29.802,-319.438	0/0:200:200,0:200:7149:0:0:0,-60.206,-643.456	0/1:177:84,93:84:2993:93:3270:-241.236,0,-216.319	0/0:91:90,0:90:3228:0:0:0,-27.0927,-290.364	0/1:180:101,79:101:3620:79:2765:-194.887,0,-271.043	0/1:170:62,108:62:2215:108:3822:-293.002,0,-148.439	0/0:302:302,0:302:10806:0:0:0,-90.9111,-972.44	0/0:311:311,0:311:11126:0:0:0,-93.6203,-1001.14
chr12	21036726	.	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chr12	21106176	.	A	G	159671	PASS	AB=0.529979;ABP=39.465;AC=144;AF=0.774194;AN=186;AO=7552;CIGAR=1X;DP=9757;DPB=9757;DPRA=0;EPP=16393.3;EPPR=4788.94;GTI=0;LEN=1;MEANALT=1.01075;MQM=59.9943;MQMR=59.9909;NS=93;NUMALT=1;ODDS=3.00673;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=269487;QR=78898;RO=2204;RPL=0;RPP=16402;RPPR=4788.94;RPR=7552;RUN=1;SAF=7551;SAP=16393.3;SAR=1;SRF=2204;SRP=4788.94;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:88:0,88:0:0:88:3096:-278.864,-26.4906,0	0/1:60:30,30:30:1061:30:1072:-78.7307,0,-77.7376	0/1:185:87,98:87:3113:98:3516:-260.959,0,-224.704	1/1:299:1,298:1:36:298:10606:-950.854,-86.4097,0	0/1:64:28,36:28:1008:36:1289:-97.0478,0,-71.7704	0/1:34:13,21:13:468:21:737:-56.4156,0,-32.2246	1/1:109:2,107:2:72:107:3840:-338.959,-25.9755,0	0/1:127:57,70:57:2044:70:2489:-186.031,0,-146.001	0/1:133:50,83:50:1777:83:2969:-227.404,0,-120.174	1/1:82:0,82:0:0:82:2929:-263.843,-24.6845,0	1/1:41:0,41:0:0:41:1453:-131.064,-12.3422,0	0/1:129:75,54:75:2670:54:1935:-135.593,0,-201.71	1/1:111:0,111:0:0:111:3968:-357.309,-33.4143,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:70:1,69:1:36:69:2470:-218.955,-17.4738,0	0/1:72:33,39:33:1184:39:1404:-104.985,0,-85.1942	1/1:26:0,26:0:0:26:924:-83.4777,-7.82678,0	1/1:36:0,36:0:0:36:1292:-116.584,-10.8371,0	1/1:29:0,29:0:0:29:1035:-93.4631,-8.72987,0	0/1:159:63,96:63:2268:96:3433:-261.318,0,-156.518	0/1:195:79,116:79:2836:116:4123:-312.554,0,-196.648	0/1:139:97,42:97:3443:42:1489:-92.4602,0,-268.236	1/1:161:3,158:3:108:158:5640:-497.487,-38.3907,0	1/1:53:0,53:0:0:53:1900:-171.278,-15.9546,0	1/1:108:0,108:0:0:108:3880:-349.393,-32.5112,0	0/1:273:123,150:123:4405:150:5373:-401.518,0,-314.439	1/1:280:0,280:0:0:280:9984:-898.498,-84.2884,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	0/1:273:124,149:124:4460:149:5310:-395.852,0,-319.387	0/1:143:67,76:67:2397:76:2720:-201.996,0,-172.938	0/1:138:71,67:71:2537:67:2408:-175.434,0,-187.037	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/1:201:110,91:110:3952:91:3257:-232.842,0,-295.363	0/1:164:82,82:82:2936:82:2890:-210.967,0,-215.105	1/1:55:0,55:0:0:55:1961:-176.763,-16.5567,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:162:0,162:0:0:162:5785:-520.764,-48.7669,0	1/1:42:0,42:0:0:42:1512:-136.375,-12.6433,0	1/1:215:0,215:0:0:215:7651:-688.627,-64.7215,0	1/1:51:0,51:0:0:51:1815:-163.63,-15.3525,0	0/1:60:30,29:30:1076:29:1021:-74.2248,0,-79.1773	0/1:129:61,68:61:2180:68:2438:-180.842,0,-157.633	1/1:139:0,139:0:0:139:4991:-449.336,-41.8432,0	1/1:209:0,209:0:0:209:7441:-669.735,-62.9153,0	1/1:90:1,89:1:36:89:3196:-284.264,-23.4944,0	1/1:136:0,136:0:0:136:4865:-438.001,-40.9401,0	0/1:91:40,51:40:1432:51:1831:-137.677,0,-101.784	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:150:0,150:0:0:150:5354:-481.991,-45.1545,0	1/1:53:0,53:0:0:53:1908:-171.998,-15.9546,0	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:165:71,94:71:2518:94:3346:-251.685,0,-177.199	1/1:62:0,62:0:0:62:2209:-199.073,-18.6639,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:59:0,59:0:0:59:2065:-186.117,-17.7608,0	0/1:85:38,47:38:1368:47:1673:-125.268,0,-97.8333	.:.:.:.:.:.:.:.	1/1:309:0,309:0:0:309:11052:-994.572,-93.0183,0	0/1:189:83,106:83:2988:106:3785:-283.953,0,-212.256	1/1:67:1,66:1:36:66:2319:-205.368,-16.5707,0	0/1:95:55,40:55:1965:40:1428:-100.22,0,-148.525	0/1:173:63,110:63:2241:110:3925:-301.364,0,-149.874	0/1:152:80,72:80:2868:72:2586:-187.232,0,-212.6	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:46:27,19:27:949:19:669:-46.6866,0,-71.8754	0/1:60:31,29:31:1116:29:1029:-74.8593,0,-82.6899	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/1:171:63,108:63:2264:108:3876:-297.558,0,-152.546	0/1:84:55,29:55:1980:29:1008:-65.7405,0,-153.188	0/1:182:49,133:49:1756:133:4716:-369.809,0,-103.537	1/1:179:0,179:0:0:179:6393:-575.458,-53.8844,0	1/1:109:1,108:1:36:108:3815:-339.948,-29.214,0	0/1:89:42,47:42:1493:47:1671:-123.884,0,-107.871	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:141:0,141:0:0:141:5048:-454.465,-42.4452,0	0/1:114:49,65:49:1764:65:2317:-174.471,0,-124.726	1/1:405:0,405:0:0:405:14462:-1301.33,-121.917,0	1/1:66:0,66:0:0:66:2355:-212.209,-19.868,0	1/1:84:0,84:0:0:84:2985:-268.881,-25.2865,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	1/1:134:0,134:0:0:134:4808:-432.874,-40.338,0	1/1:31:0,31:0:0:31:1092:-98.5795,-9.33193,0	1/1:80:0,80:0:0:80:2872:-258.716,-24.0824,0	0/1:79:39,40:39:1389:40:1436:-105.756,0,-101.526	1/1:46:0,46:0:0:46:1633:-147.257,-13.8474,0	0/1:82:39,43:39:1400:43:1531:-113.398,0,-101.615	0/1:96:67,29:67:2404:29:1035:-64.5642,0,-187.718	1/1:164:0,164:0:0:164:5834:-525.173,-49.3689,0	1/1:137:0,137:0:0:137:4886:-439.891,-41.2411,0
chr12	21172486	.	T	C	102461	PASS	AB=0.461988;ABP=45.9318;AC=141;AF=0.758065;AN=186;AO=4858;CIGAR=1X;DP=6715;DPB=6715;DPRA=21.0612;EPP=10387.6;EPPR=3908.24;GTI=0;LEN=1;MEANALT=1.03297;MQM=59.8932;MQMR=59.973;NS=93;NUMALT=1;ODDS=1.49433;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=173642;QR=66253;RO=1854;RPL=21;RPP=10370.4;RPPR=3908.24;RPR=4837;RUN=1;SAF=4856;SAP=10534.7;SAR=2;SRF=1854;SRP=4028.92;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:888:-80.2357,-7.52575,0	0/1:55:17,38:17:593:38:1352:-105.424,0,-37.1381	0/1:84:54,30:54:1940:30:1067:-71.0547,0,-149.59	1/1:116:0,116:0:0:116:4145:-373.228,-34.9195,0	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:89:51,38:51:1813:38:1351:-94.9078,0,-136.658	0/1:76:29,47:29:1036:47:1684:-128.968,0,-70.6756	1/1:67:0,67:0:0:67:2392:-215.501,-20.169,0	1/1:86:0,86:0:0:86:3092:-277.866,-25.8886,0	0/1:134:54,80:54:1927:80:2860:-217.297,0,-133.368	1/1:98:0,97:0:0:97:3470:-312.148,-29.1999,0	1/1:98:0,97:0:0:97:3468:-311.957,-29.1999,0	1/1:84:0,84:0:0:84:3009:-271.04,-25.2865,0	0/1:55:29,26:29:1040:26:928:-67.2816,0,-77.3577	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	.:.:.:.:.:.:.:.	1/1:53:0,53:0:0:53:1884:-169.839,-15.9546,0	0/1:128:65,63:65:2332:63:2251:-164.321,0,-171.608	0/1:152:74,78:74:2629:78:2783:-204.946,0,-191.1	0/1:59:45,14:45:1601:14:504:-27.9373,0,-126.617	1/1:246:3,243:3:108:243:8661:-768.758,-63.9782,0	0/1:34:5,29:5:165:29:1044:-84.0398,0,-4.93858	1/1:58:0,58:0:0:58:2071:-186.66,-17.4597,0	0/1:107:55,52:55:1972:52:1863:-135.739,0,-145.545	1/1:192:0,192:0:0:192:6842:-615.847,-57.7978,0	1/1:46:0,46:0:0:46:1651:-148.878,-13.8474,0	0/1:138:86,52:86:3080:52:1851:-125.327,0,-235.886	0/1:81:51,30:51:1801:30:1076:-72.7694,0,-137.987	0/1:134:66,68:66:2355:68:2435:-179.067,0,-171.87	0/1:13:8,5:8:273:5:180:-12.6387,0,-20.9868	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	0/1:26:18,8:18:644:8:284:-18.0766,0,-50.4638	0/1:197:97,100:97:3492:100:3575:-262.654,0,-255.186	0/1:68:45,23:45:1604:23:815:-53.191,0,-124.18	1/1:64:0,64:0:0:64:2292:-206.513,-19.2659,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:58:0,58:0:0:58:2058:-185.488,-17.4597,0	1/1:68:0,68:0:0:68:2431:-219.04,-20.47,0	1/1:73:0,73:0:0:73:2581:-232.537,-21.9752,0	1/1:77:0,77:0:0:77:2751:-247.832,-23.1793,0	0/1:49:27,22:27:972:22:784:-56.1334,0,-73.0474	0/1:90:49,41:49:1732:41:1453:-103.971,0,-129.069	1/1:70:0,70:0:0:70:2516:-226.692,-21.0721,0	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:51:0,51:0:0:51:1824:-164.441,-15.3525,0	1/1:63:0,63:0:0:63:2245:-202.312,-18.9649,0	0/1:69:28,41:28:993:41:1476:-112.365,0,-68.9114	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:91:0,91:0:0:91:3264:-293.969,-27.3937,0	1/1:40:0,40:0:0:40:1427:-128.727,-12.0412,0	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/1:111:53,58:53:1885:58:2063:-152.526,0,-136.512	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:19:1,18:1:36:18:648:-55.0536,-2.1213,0	1/1:13:0,13:0:0:13:468:-42.455,-3.91339,0	1/1:74:0,74:0:0:74:2649:-238.655,-22.2762,0	0/1:105:46,59:46:1656:59:2120:-159.46,0,-117.72	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:73:0,73:0:0:73:2616:-235.513,-21.9752,0	0/1:100:51,49:51:1821:49:1764:-127.751,0,-134.066	1/1:35:0,35:0:0:35:1251:-112.894,-10.5361,0	0/1:26:19,7:19:669:7:252:-15.2022,0,-52.7072	0/1:230:133,97:133:4768:97:3465:-242.503,0,-360.04	0/1:148:108,40:108:3859:40:1420:-83.545,0,-302.953	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	0/1:35:25,10:25:900:10:349:-21.2087,0,-70.785	0/1:41:16,25:16:576:25:896:-68.6181,0,-39.8328	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	0/1:89:49,40:49:1756:40:1431:-102.295,0,-131.161	0/1:71:27,44:27:972:44:1554:-118.776,0,-66.4248	0/1:151:95,56:95:3388:56:2004:-135.173,0,-259.678	1/1:78:0,78:0:0:78:2799:-252.019,-23.4803,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:70:32,38:32:1152:38:1368:-102.341,0,-82.918	0/1:15:3,12:3:108:12:423:-33.8896,0,-5.55972	1/1:70:0,70:0:0:70:2494:-224.713,-21.0721,0	0/1:59:45,14:45:1601:14:504:-27.9196,0,-126.617	1/1:181:0,181:0:0:181:6454:-580.882,-54.4864,0	1/1:61:0,61:0:0:61:2183:-196.736,-18.3628,0	1/1:63:0,63:0:0:63:2259:-203.554,-18.9649,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	1/1:138:2,135:2:72:135:4839:-428.825,-34.7642,0	1/1:16:0,16:0:0:16:572:-51.8134,-4.81648,0	1/1:82:1,81:1:36:81:2908:-258.357,-21.0862,0	0/1:65:32,33:32:1148:33:1171:-86.1297,0,-84.0629	1/1:51:0,51:0:0:51:1828:-164.795,-15.3525,0	0/1:131:67,64:67:2412:64:2286:-166.558,0,-177.771	0/1:103:75,28:75:2688:28:1008:-60.0303,0,-211.159	1/1:66:0,66:0:0:66:2364:-213.013,-19.868,0	1/1:121:0,121:0:0:121:4318:-388.796,-36.4246,0
chr12	21172504	.	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chr12	21468850	.	A	C	69139.3	PASS	AB=0.459843;ABP=38.5883;AC=145;AF=0.771277;AN=188;AO=3351;CIGAR=1X;DP=4725;DPB=4725;DPRA=0;EPP=7270.93;EPPR=2982.27;GTI=4;LEN=1;MEANALT=1.02128;MQM=59.9749;MQMR=59.9883;NS=94;NUMALT=1;ODDS=1.22975;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119514;QR=49119;RO=1372;RPL=3351;RPP=7279.61;RPPR=2982.27;RPR=0;RUN=1;SAF=1;SAP=7270.93;SAR=3350;SRF=0;SRP=2982.27;SRR=1372;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:856:-77.3611,-7.22472,0	0/1:50:13,37:13:468:37:1328:-104.771,0,-27.4081	0/1:116:74,42:74:2660:42:1508:-101.095,0,-204.726	1/1:51:0,51:0:0:51:1817:-163.809,-15.3525,0	0/1:13:6,6:6:216:6:216:-15.9468,0,-15.9468	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:40:0,40:0:0:40:1425:-128.545,-12.0412,0	0/1:37:20,17:20:720:17:608:-43.9139,0,-53.9907	0/1:32:8,24:8:288:24:849:-67.0387,0,-16.6344	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	1/1:71:0,71:0:0:71:2522:-227.229,-21.3731,0	0/1:100:52,48:52:1849:48:1724:-125.342,0,-136.585	1/1:63:0,63:0:0:63:2268:-204.382,-18.9649,0	1/1:62:0,62:0:0:62:2183:-196.732,-18.6639,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:65:37,28:37:1332:28:1008:-71.4694,0,-100.615	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:25:0,25:0:0:25:900:-81.2926,-7.52575,0	1/1:40:0,40:0:0:40:1436:-129.538,-12.0412,0	0/1:71:40,31:40:1432:31:1082:-76.3115,0,-107.804	0/1:42:24,18:24:837:18:648:-46.0086,0,-63.0024	0/1:71:57,14:57:2040:14:496:-23.6011,0,-162.443	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	1/1:36:0,36:0:0:36:1287:-116.133,-10.8371,0	1/1:25:0,25:0:0:25:870:-78.612,-7.52575,0	0/1:96:46,50:46:1656:50:1750:-128.879,0,-120.43	1/1:92:0,92:0:0:92:3278:-295.237,-27.6948,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:165:86,79:86:3072:79:2836:-205.808,0,-227.039	0/1:39:21,18:21:752:18:629:-45.1936,0,-56.2661	0/1:50:26,24:26:936:24:864:-63.0311,0,-69.508	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:14:6,8:6:201:8:288:-22.053,0,-14.2026	0/1:185:101,84:101:3601:84:2997:-214.27,0,-268.605	0/1:48:29,19:29:1036:19:680:-47.0797,0,-79.1045	1/1:49:0,49:0:0:49:1756:-157.219,-14.7505,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	1/1:30:0,30:0:0:30:1065:-96.1598,-9.0309,0	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	1/1:47:0,47:0:0:47:1658:-149.504,-14.1484,0	0/1:39:25,14:25:900:14:485:-32.2368,0,-69.5808	0/1:51:20,31:20:720:31:1116:-85.3992,0,-49.7762	1/1:49:0,49:0:0:49:1745:-157.332,-14.7505,0	1/1:51:0,51:0:0:51:1809:-163.09,-15.3525,0	1/1:50:0,50:0:0:50:1762:-158.859,-15.0515,0	1/1:34:0,34:0:0:34:1197:-108.033,-10.235,0	0/1:58:32,26:32:1152:26:936:-67.0997,0,-86.5304	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:32:0,32:0:0:32:1117:-100.835,-9.63296,0	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/1:93:52,41:52:1864:41:1476:-105.14,0,-140.044	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:11:2,9:2:72:9:324:-26.1945,0,-3.52539	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:23:0,23:0:0:23:809:-73.1283,-6.92369,0	0/1:119:64,54:64:2304:54:1936:-138.782,0,-171.887	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	0/1:56:30,26:30:1061:26:936:-67.7018,0,-78.9417	1/1:35:1,34:1:36:34:1224:-106.869,-6.93778,0	0/1:36:19,17:19:665:17:597:-43.219,0,-49.3357	0/1:48:24,24:24:864:24:845:-61.9177,0,-63.6331	0/1:62:41,21:41:1472:21:741:-48.3477,0,-114.112	1/1:34:0,34:0:0:34:1205:-108.754,-10.235,0	0/1:24:12,12:12:432:12:417:-30.6355,0,-31.9965	0/1:49:27,22:27:968:22:788:-56.4943,0,-72.6869	1/1:27:0,27:0:0:27:960:-86.7163,-8.12781,0	0/1:69:30,39:30:1072:39:1385:-104.176,0,-76.0214	0/1:37:22,15:22:792:15:540:-37.7984,0,-60.4676	0/1:59:22,37:22:788:37:1328:-102.061,0,-53.484	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	1/1:36:0,36:0:0:36:1269:-114.511,-10.8371,0	0/1:58:37,21:37:1328:21:756:-50.9075,0,-102.362	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	1/1:47:0,47:0:0:47:1692:-152.567,-14.1484,0	0/1:57:38,19:38:1345:19:650:-41.6586,0,-104.189	1/1:115:0,115:0:0:115:4129:-371.793,-34.6185,0	1/1:70:0,70:0:0:70:2493:-224.622,-21.0721,0	0/1:60:31,29:31:1116:29:1025:-74.4989,0,-82.6899	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	1/1:113:0,113:0:0:113:4001:-360.277,-34.0164,0	1/1:14:1,13:1:36:13:464:-38.4992,-0.616145,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:51:29,22:29:1040:22:777:-54.8978,0,-78.5618	0/1:51:17,34:17:612:34:1224:-95.1145,0,-40.0609	0/1:138:65,73:65:2332:73:2624:-194.865,0,-168.597	0/1:97:69,28:69:2476:28:1000:-61.0978,0,-193.894	1/1:65:0,65:0:0:65:2298:-207.078,-19.567,0	1/1:99:0,99:0:0:99:3518:-316.828,-29.802,0
chr12	21471708	.	C	A	74711.8	PASS	AB=0.470704;ABP=21.9678;AC=139;AF=0.747312;AN=186;AO=3528;CIGAR=1X;DP=4883;DPB=4883;DPRA=13.2582;EPP=7388.54;EPPR=2824.84;GTI=4;LEN=1;MEANALT=1.04348;MQM=59.9167;MQMR=59.8927;NS=93;NUMALT=1;ODDS=0.365827;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=125748;QR=47985;RO=1351;RPL=32;RPP=7388.54;RPPR=2824.84;RPR=3496;RUN=1;SAF=3528;SAP=7663.96;SAR=0;SRF=1351;SRP=2936.67;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:39:27,12:27:964:12:428:-27.1186,0,-75.3367	0/1:35:21,14:21:738:14:496:-34.4382,0,-56.2045	1/1:103:0,103:0:0:103:3692:-332.459,-31.0061,0	0/1:30:19,11:19:680:11:396:-26.9495,0,-52.4845	0/1:43:19,24:19:680:24:864:-65.1383,0,-48.5849	1/1:51:0,51:0:0:51:1820:-164.045,-15.3525,0	0/1:55:25,30:25:888:30:1072:-80.2358,0,-63.6824	0/1:54:36,18:36:1269:18:617:-39.5937,0,-98.2375	1/1:45:0,45:0:0:45:1612:-145.364,-13.5464,0	1/1:42:0,42:0:0:42:1465:-132.129,-12.6433,0	0/1:79:34,45:34:1207:45:1612:-121.589,0,-85.1539	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:61:0,61:0:0:61:2192:-197.545,-18.3628,0	0/1:45:23,22:23:819:22:792:-58.0593,0,-60.4852	1/1:22:1,21:1:36:21:748:-64.047,-3.02439,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	1/1:18:0,18:0:0:18:640:-57.9293,-5.41854,0	0/1:131:58,73:58:2059:73:2599:-194.724,0,-146.146	0/1:93:41,52:41:1460:52:1855:-139.233,0,-103.7	0/1:39:29,10:29:1031:10:360:-21.0041,0,-81.3615	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:30:3,27:3:108:27:968:-78.4065,0,-1.04427	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	0/1:146:90,56:90:3190:56:2000:-136.323,0,-243.366	1/1:101:0,101:0:0:101:3612:-325.251,-30.404,0	1/1:44:0,44:0:0:44:1552:-139.958,-13.2453,0	0/1:116:57,59:57:2044:59:2100:-154.35,0,-149.312	0/1:75:55,20:55:1968:20:712:-41.8261,0,-154.818	0/1:50:17,33:17:612:33:1184:-91.8168,0,-40.3573	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.33157	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:4:4,0:4:136:0:0:0,-1.20412,-12.5755	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:135:67,68:67:2369:68:2428:-178.137,0,-172.828	0/1:39:13,26:13:468:26:920:-71.3769,0,-30.7195	1/1:39:0,39:0:0:39:1388:-125.219,-11.7402,0	0/1:2:1,1:1:32:1:36:-2.99621,0,-2.59725	1/1:50:0,50:0:0:50:1768:-159.401,-15.0515,0	1/1:18:0,18:0:0:18:635:-57.4766,-5.41854,0	1/1:49:0,49:0:0:49:1752:-157.964,-14.7505,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	0/1:41:20,21:20:716:21:748:-55.3031,0,-52.4255	0/1:47:18,29:18:631:29:1032:-79.0451,0,-42.9673	1/1:52:0,52:0:0:52:1860:-167.671,-15.6536,0	1/1:89:0,89:0:0:89:3153:-283.977,-26.7917,0	1/1:48:0,48:0:0:48:1715:-154.636,-14.4494,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:101:57,44:57:2044:44:1576:-111.728,0,-153.828	.:.:.:.:.:.:.:.	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	1/1:89:0,89:0:0:89:3157:-284.271,-26.7917,0	0/1:8:5,3:5:172:3:108:-7.66693,0,-13.4097	0/1:48:29,19:29:1035:19:676:-46.7186,0,-79.0136	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:33:0,33:0:0:33:1183:-106.778,-9.93399,0	0/1:77:35,42:35:1235:42:1508:-112.835,0,-88.2741	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:117:0,117:0:0:117:4145:-373.229,-35.2205,0	0/1:79:47,32:47:1679:32:1143:-79.3973,0,-127.244	0/1:41:4,37:4:140:37:1320:-106.76,0,-0.602347	0/1:21:8,13:8:284:13:468:-36.138,0,-19.5817	0/1:45:27,18:27:972:18:644:-44.7442,0,-74.2516	0/1:107:81,26:81:2856:26:913:-50.2747,0,-225.065	1/1:28:0,27:0:0:27:960:-86.3004,-8.12781,0	0/1:26:12,14:12:424:14:500:-37.507,0,-30.6696	0/1:28:15,13:15:523:13:464:-33.6687,0,-38.9696	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:77:54,23:54:1919:23:812:-50.217,0,-149.484	0/1:120:70,49:70:2481:49:1747:-121.331,0,-187.347	0/1:50:23,27:23:809:27:960:-71.6648,0,-58.0768	1/1:127:0,127:0:0:127:4542:-408.941,-38.2308,0	1/1:119:0,118:0:0:118:4133:-371.794,-35.5215,0	0/1:57:28,29:28:992:29:1028:-75.6743,0,-72.4357	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	1/1:64:0,64:0:0:64:2281:-205.55,-19.2659,0	0/1:74:44,30:44:1576:30:1076:-74.8766,0,-119.842	1/1:97:0,97:0:0:97:3464:-311.973,-29.1999,0	1/1:40:0,40:0:0:40:1440:-129.898,-12.0412,0	0/1:42:19,23:19:668:23:820:-61.4793,0,-47.8024	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	1/1:100:1,99:1:36:99:3538:-314.983,-26.5047,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:49:0,49:0:0:49:1743:-157.141,-14.7505,0	0/1:47:17,30:17:604:30:1076:-83.0044,0,-40.5422	0/1:31:15,16:15:527:16:559:-41.3057,0,-38.4283	0/1:79:44,35:44:1560:35:1260:-89.9241,0,-116.906	0/1:44:31,13:31:1096:13:460:-28.4901,0,-85.7037	1/1:96:0,95:0:0:95:3377:-303.754,-28.5979,0	1/1:76:0,76:0:0:76:2688:-242.162,-22.8783,0
chr12	21471726	.	C	T	25928.8	PASS	AB=0.522709;ABP=14.4509;AC=47;AF=0.25;AN=188;AO=1341;CIGAR=1X;DP=4961;DPB=4961;DPRA=1.12871;EPP=1930.42;EPPR=4773.29;GTI=4;LEN=1;MEANALT=1;MQM=59.9098;MQMR=59.9202;NS=94;NUMALT=1;ODDS=0.560615;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=47530;QR=128925;RO=3620;RPL=1216;RPP=1930.42;RPPR=4773.29;RPR=125;RUN=1;SAF=1341;SAP=2914.95;SAR=0;SRF=3620;SRP=7863.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:41:13,28:13:446:28:995:-77.5218,0,-28.1242	0/1:36:14,22:14:504:22:792:-60.762,0,-34.861	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.695	0/1:30:11,19:11:388:19:676:-52.1233,0,-26.2255	0/1:42:24,18:24:856:18:636:-44.9248,0,-64.7178	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:56:30,26:30:1072:26:928:-66.9806,0,-79.9348	0/1:55:18,37:18:648:37:1296:-100.375,0,-42.0952	0/0:49:49,0:49:1741:0:0:0,-14.7505,-156.968	0/0:45:45,0:45:1583:0:0:0,-13.5463,-142.749	0/1:81:45,36:45:1612:36:1274:-90.5781,0,-120.987	0/0:63:63,0:63:2225:0:0:0,-18.9649,-200.51	0/0:52:52,0:52:1849:0:0:0,-15.6536,-166.688	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/1:47:24,23:24:860:23:815:-59.5224,0,-63.5734	0/0:23:22,1:22:779:1:36:0,-3.32541,-66.8338	0/0:29:29,0:29:1031:0:0:0,-8.72987,-93.1026	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:131:76,55:76:2724:55:1946:-135.98,0,-205.968	0/1:93:51,42:51:1828:42:1469:-104.506,0,-136.805	0/1:40:11,29:11:392:29:1040:-81.8723,0,-23.5789	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/1:31:28,3:28:1004:3:108:-0.74324,0,-81.3393	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/1:141:54,87:54:1931:87:3065:-233.625,0,-131.62	0/0:102:102,0:102:3603:0:0:0,-30.7051,-324.472	0/0:43:43,0:43:1532:0:0:0,-12.9443,-138.17	0/1:119:61,58:61:2156:58:2072:-150.928,0,-158.483	0/1:75:19,56:19:672:56:1990:-156.796,0,-38.2296	0/1:50:33,17:33:1184:17:612:-40.3573,0,-91.8168	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:135:71,64:71:2514:64:2262:-163.203,0,-185.873	0/1:39:26,13:26:913:13:468:-30.7195,0,-70.7438	0/0:39:39,0:39:1371:0:0:0,-11.7402,-123.688	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:20:20,0:20:707:0:0:0,-6.0206,-63.9542	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.203	0/0:40:40,0:40:1427:0:0:0,-12.0412,-128.727	0/1:42:22,20:22:784:20:716:-52.1245,0,-58.2407	0/1:47:29,18:29:1036:18:644:-44.1422,0,-79.4055	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.91	0/0:93:93,0:93:3305:0:0:0,-27.9958,-297.649	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.282	0/0:56:56,0:56:1999:0:0:0,-16.8577,-180.183	0/1:100:43,57:43:1536:57:2024:-152.327,0,-108.43	0/0:1:1,0:1:27:0:0:0,-0.30103,-2.69978	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	0/0:92:92,0:92:3267:0:0:0,-27.6948,-294.173	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:50:20,30:20:720:30:1072:-81.741,0,-50.0773	0/0:17:17,0:17:589:0:0:0,-5.11751,-53.3333	0/1:7:4,3:4:135:3:108:-7.96796,0,-10.3753	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.328	0/1:76:42,34:42:1508:34:1207:-86.057,0,-113.136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:124:124,0:124:4407:0:0:0,-37.3277,-396.801	0/1:79:33,46:33:1175:46:1620:-122.035,0,-82.2756	0/1:42:38,4:38:1334:4:144:-0.670358,0,-107.713	0/1:21:14,7:14:495:7:248:-16.3426,0,-38.5614	0/1:46:18,28:18:648:28:1008:-77.189,0,-44.8045	0/1:104:28,76:28:1004:76:2724:-214.094,0,-59.3687	0/0:31:31,0:31:1092:0:0:0,-9.33193,-98.5334	0/1:27:15,12:15:523:12:432:-31.0934,0,-39.2703	0/1:28:13,15:13:468:15:532:-39.7842,0,-34.0308	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:78:26,52:26:915:52:1818:-140.411,0,-59.1843	0/1:120:50,70:50:1758:70:2463:-185.793,0,-122.358	0/1:50:27,23:27:972:23:798:-57.0851,0,-72.7464	0/0:124:124,0:124:4434:0:0:0,-37.3277,-399.23	0/0:122:122,0:122:4367:0:0:0,-36.7257,-393.203	0/1:57:28,29:28:1000:29:1018:-74.7717,0,-73.1567	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/1:73:29,44:29:1044:44:1574:-119.973,0,-72.2996	0/0:102:102,0:102:3639:0:0:0,-30.7051,-327.715	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	0/1:39:22,17:22:784:17:575:-40.3283,0,-59.1437	0/0:38:38,0:38:1328:0:0:0,-11.4391,-119.815	0/0:102:101,1:101:3564:1:36:0,-27.1068,-317.358	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:48:48,0:48:1690:0:0:0,-14.4494,-152.377	0/1:49:31,18:31:1108:18:640:-43.1788,0,-85.2805	0/1:31:16,15:16:572:15:536:-39.2429,0,-42.4815	0/1:80:36,44:36:1284:44:1541:-114.896,0,-91.781	0/1:43:13,30:13:464:30:1072:-83.8473,0,-29.1532	0/0:100:100,0:100:3577:0:0:0,-30.103,-321.864	0/0:79:79,0:79:2819:0:0:0,-23.7814,-253.929
chr12	21471780	.	ACGT	CCGC,CCGT	184821	PASS	AB=0.46727,0.526055;ABP=46.2228,30.394;AC=141,47;AF=0.75,0.25;AN=188;AO=6432,2468;CIGAR=1X2M1X,1X3M;DP=8949;DPB=8949.5;DPRA=19.4326,1.4101;EPP=13952.6,5362.2;EPPR=16.0391;GTI=1;LEN=4,1;MEANALT=1.98913,2.46296;MQM=59.9003,59.9631;MQMR=60;NS=94;NUMALT=2;ODDS=1.42176;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=72,0;PQR=0;PRO=0;QA=223662,87668;QR=194;RO=6;RPL=2,2;RPP=13952.6,5344.85;RPPR=16.0391;RPR=6430,2466;RUN=1,1;SAF=0,2;SAP=13969.9,5344.85;SAR=6432,2466;SRF=0;SRP=16.0391;SRR=6;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,34,0:0:0:34,0:1171,0:-105.69,-10.235,0,-105.69,-10.235,-105.69	1/2:208:0,100,106:0:0:100,106:3478,3800:-592.787,-310.012,-279.909,-282.851,0,-250.942	1/2:121:0,58,63:0:0:58,63:2061,2260:-352.415,-184.698,-167.238,-168.074,0,-149.109	1/1:197:0,196,0:0:0:196,0:6858,0:-616.943,-59.0019,0,-616.943,-59.0019,-616.943	1/2:90:0,35,55:0:0:35,55:1236,1939:-258.882,-158.226,-147.69,-101.008,0,-84.4513	1/2:45:0,13,32:0:0:13,32:458,1135:-130.113,-92.8251,-88.9117,-37.6408,0,-28.0079	1/1:110:0,110,0:0:0:110,0:3855,0:-347.148,-33.1133,0,-347.148,-33.1133,-347.148	1/2:134:0,53,81:0:0:53,81:1778,2867:-377.868,-233.883,-217.928,-144.328,0,-119.945	1/2:79:0,30,49:0:0:30,49:1036,1760:-228.052,-143.889,-134.858,-84.5136,0,-69.7632	1/1:158:0,158,0:0:0:158,0:5477,0:-493.063,-47.5627,0,-493.063,-47.5627,-493.063	1/1:44:0,44,0:0:0:44,0:1523,0:-137.359,-13.2453,0,-137.359,-13.2453,-137.359	1/2:55:0,22,33:0:0:22,33:745,1143:-153.637,-93.238,-86.6153,-60.7402,0,-50.8062	1/1:49:0,49,0:0:0:49,0:1641,0:-147.698,-14.7505,0,-147.698,-14.7505,-147.698	1/1:74:0,73,0:0:0:73,0:2520,0:-226.692,-21.9752,0,-226.692,-21.9752,-226.692	1/1:67:0,67,0:0:0:67,0:2316,0:-208.68,-20.169,0,-208.68,-20.169,-208.68	1/2:50:0,27,23:0:0:27,23:931,799:-140.914,-65.3039,-57.1761,-75.9565,0,-69.0328	1/1:92:0,92,0:0:0:92,0:3151,0:-283.807,-27.6948,0,-283.807,-27.6948,-283.807	1/1:60:0,60,0:0:0:60,0:2087,0:-188.101,-18.0618,0,-188.101,-18.0618,-188.101	1/1:24:0,24,0:0:0:24,0:835,0:-75.4559,-7.22472,0,-75.4559,-7.22472,-75.4559	1/2:94:0,46,48:0:0:46,48:1586,1715:-269.013,-140.185,-126.338,-129.178,0,-114.729	1/2:158:1,80,77:1:22:80,77:2766,2756:-447.651,-223.204,-200.798,-223.201,0,-201.699	1/2:103:0,29,74:0:0:29,74:1011,2648:-298.509,-216.29,-207.56,-82.5696,0,-60.2934	1/1:95:0,92,1:0:0:92,1:3228,36:-290.406,-27.6948,0,-287.468,-24.7449,-287.167	1/2:116:0,100,16:0:0:100,16:3492,568:-330.67,-46.6354,-16.5324,-284.389,0,-279.572	1/1:58:0,58,0:0:0:58,0:2018,0:-181.887,-17.4597,0,-181.887,-17.4597,-181.887	1/2:331:0,198,132:0:0:198,132:6887,4705:-943.309,-383.622,-324.018,-559.788,0,-520.052	1/1:212:0,210,2:0:0:210,2:7335,68:-659.752,-63.2163,0,-654.236,-57.3607,-653.634	1/1:35:0,34,0:0:0:34,0:1166,0:-105.028,-10.235,0,-105.028,-10.235,-105.028	1/2:244:0,107,137:0:0:107,137:3744,4891:-703.702,-399.102,-366.892,-304.953,0,-263.712	1/2:219:0,96,120:0:0:96,120:3361,4276:-622.07,-348.611,-319.713,-273.528,0,-237.405	1/2:176:0,79,96:0:0:79,96:2750,3396:-500.316,-276.733,-252.951,-223.712,0,-194.813	2/2:6:0,0,6:0:0:0,6:0,216:-19.7905,-19.7905,-19.7905,-1.80618,-1.80618,0	1/1:21:0,21,0:0:0:21,0:706,0:-63.8521,-6.32163,0,-63.8521,-6.32163,-63.8521	1/1:4:0,4,0:0:0:4,0:143,0:-13.2214,-1.20412,0,-13.2214,-1.20412,-13.2214	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:175:0,86,88:0:0:86,88:2997,3112:-497.271,-253.546,-227.657,-243.805,0,-217.315	1/2:136:0,61,73:0:0:61,73:2115,2601:-383.956,-212.081,-193.718,-171.943,0,-149.968	1/1:53:0,52,0:0:0:52,0:1813,0:-163.089,-15.6536,0,-163.089,-15.6536,-163.089	1/2:6:0,3,3:0:0:3,3:90,108:-16.3273,-9.17208,-8.26899,-7.48495,0,-6.58186	1/1:153:0,153,0:0:0:153,0:5365,0:-482.155,-46.0576,0,-482.155,-46.0576,-482.155	1/1:26:0,26,0:0:0:26,0:895,0:-80.8618,-7.82678,0,-80.8618,-7.82678,-80.8618	1/1:141:0,139,1:0:0:139,1:4841,36:-435.503,-41.8432,0,-432.565,-38.8958,-432.264	1/1:82:0,81,0:0:0:81,0:2804,0:-252.305,-24.3834,0,-252.305,-24.3834,-252.305	1/2:52:0,24,28:0:0:24,28:828,982:-147.522,-80.2628,-73.0381,-67.6071,0,-59.1782	1/2:77:0,32,44:0:0:32,44:1116,1551:-217.078,-126.315,-116.682,-90.7919,0,-77.5465	1/1:86:0,84,1:0:0:84,1:2904,36:-261.236,-25.2865,0,-258.298,-22.3479,-257.997	1/1:141:0,141,0:0:0:141,0:4885,0:-439.814,-42.4452,0,-439.814,-42.4452,-439.814	1/1:71:0,70,0:0:0:70,0:2456,0:-221.052,-21.0721,0,-221.052,-21.0721,-221.052	1/1:178:0,178,0:0:0:178,0:6229,0:-560.718,-53.5833,0,-560.718,-53.5833,-560.718	1/2:95:0,21,74:0:0:21,74:723,2638:-274.109,-215.39,-209.068,-59.0659,0,-36.7896	1/1:6:0,6,0:0:0:6,0:210,0:-19.242,-1.80618,0,-19.242,-1.80618,-19.242	1/1:101:0,99,0:0:0:99,0:3473,0:-312.423,-29.802,0,-312.423,-29.802,-312.423	1/1:70:0,69,0:0:0:69,0:2412,0:-216.996,-20.7711,0,-216.996,-20.7711,-216.996	1/2:11:0,7,4:0:0:7,4:245,144:-32.0363,-12.1095,-10.0023,-20.283,0,-19.0789	1/2:154:0,65,88:0:0:65,88:2249,3160:-440.503,-257.774,-238.207,-182.721,0,-156.23	1/1:37:0,37,0:0:0:37,0:1293,0:-116.669,-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chr12	21515262	.	TGT	CGA,TGA	226527	PASS	AB=0.456469,0.540385;ABP=97.1596,84.0396;AC=144,44;AF=0.765957,0.234043;AN=188;AO=7588,3106;CIGAR=1X1M1X,2M1X;DP=10724;DPB=10724;DPRA=0,1.37517;EPP=16281,6626.55;EPPR=5.18177;GTI=5;LEN=3,1;MEANALT=1.84043,2.41176;MQM=59.8938,59.9639;MQMR=60;NS=94;NUMALT=2;ODDS=0.505266;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=266040,111053;QR=36;RO=1;RPL=7565,3092;RPP=16281,6626.55;RPPR=5.18177;RPR=23,14;RUN=1,1;SAF=7588,3106;SAP=16480.1,6747.6;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:75:0,75,0:0:0:75,0:2627,0:-236.679,-22.5773,0,-236.679,-22.5773,-236.679	1/2:87:0,38,48:0:0:38,48:1324,1728:-248.749,-141.084,-129.645,-107.745,0,-93.2959	1/2:234:0,109,123:0:0:109,123:3816,4389:-668.294,-357.836,-325.024,-310.49,0,-273.464	1/1:306:0,305,0:0:0:305,0:10743,0:-966.434,-91.8142,0,-966.434,-91.8142,-966.434	1/2:59:0,12,47:0:0:12,47:428,1688:-172.948,-138.059,-134.446,-35.2467,0,-21.0982	1/2:49:0,21,28:0:0:21,28:742,1008:-143.033,-82.6075,-76.2859,-60.7819,0,-52.3531	1/1:162:0,161,0:0:0:161,0:5622,0:-505.832,-48.4658,0,-505.832,-48.4658,-505.832	1/2:190:0,97,93:0:0:97,93:3411,3317:-548.397,-270.744,-241.544,-278.007,0,-250.011	1/2:192:0,84,108:0:0:84,108:2938,3864:-554.452,-315.436,-290.15,-239.369,0,-206.858	1/1:103:0,103,0:0:0:103,0:3613,0:-325.249,-31.0061,0,-325.249,-31.0061,-325.249	1/1:87:0,87,0:0:0:87,0:3041,0:-273.92,-26.1896,0,-273.92,-26.1896,-273.92	1/2:118:0,70,48:0:0:70,48:2378,1697:-331.419,-138.565,-117.493,-193.202,0,-178.753	1/1:83:0,83,0:0:0:83,0:2919,0:-262.927,-24.9855,0,-262.927,-24.9855,-262.927	1/1:74:0,74,0:0:0:74,0:2598,0:-234.071,-22.2762,0,-234.071,-22.2762,-234.071	1/1:115:0,115,0:0:0:115,0:4039,0:-363.683,-34.6185,0,-363.683,-34.6185,-363.683	1/2:63:0,30,32:0:0:30,32:1066,1152:-180.86,-93.9974,-84.9665,-86.8601,0,-77.2272	1/1:50:1,48,0:1:36:48,0:1703,0:-149.93,-11.512,0,-150.231,-14.4494,-153.169	1/1:29:0,29,0:0:0:29,0:1024,0:-92.473,-8.72987,0,-92.473,-8.72987,-92.473	1/1:28:0,28,0:0:0:28,0:988,0:-89.2335,-8.42884,0,-89.2335,-8.42884,-89.2335	1/2:181:0,77,104:0:0:77,104:2686,3704:-520.551,-302.257,-279.077,-218.646,0,-187.339	1/2:225:0,126,99:0:0:126,99:4427,3525:-647.962,-287.639,-249.709,-360.677,0,-330.875	1/2:113:0,32,80:0:0:32,80:1132,2872:-326.545,-234.345,-224.712,-92.2723,0,-68.1899	1/1:184:0,184,0:0:0:184,0:6441,0:-579.787,-55.3895,0,-579.787,-55.3895,-579.787	1/1:87:0,80,5:0:0:80,5:2749,180:-247.305,-24.0824,0,-232.617,-9.35608,-231.112	1/1:123:0,122,0:0:0:122,0:4270,0:-384.268,-36.7257,0,-384.268,-36.7257,-384.268	1/2:380:0,192,187:0:0:192,187:6730,6683:-1092.61,-544.975,-487.177,-547.711,0,-491.418	1/1:238:0,236,1:0:0:236,1:8271,32:-744.061,-71.0431,0,-741.483,-68.4095,-741.181	1/1:36:0,36,0:0:0:36,0:1270,0:-114.602,-10.8371,0,-114.602,-10.8371,-114.602	1/2:236:0,89,146:0:0:89,146:3124,5232:-680.97,-426.727,-399.935,-254.257,0,-210.306	1/2:158:0,56,102:0:0:56,102:1939,3651:-455.663,-298.089,-281.231,-157.925,0,-127.22	1/2:125:0,60,65:0:0:60,65:2085,2316:-358.639,-189.134,-171.072,-169.856,0,-150.29	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:15:0,15,0:0:0:15,0:524,0:-47.4887,-4.51545,0,-47.4887,-4.51545,-47.4887	1/1:6:0,6,0:0:0:6,0:203,0:-18.6015,-1.80618,0,-18.6015,-1.80618,-18.6015	1/2:14:0,12,2:0:0:12,2:432,72:-41.4837,-6.23466,-2.6223,-35.6088,0,-35.0068	1/2:13:0,8,5:0:0:8,5:264,176:-36.0096,-14.6799,-12.2716,-21.6731,0,-20.168	1/2:250:0,122,127:0:0:122,127:4317,4549:-722.721,-371.093,-334.367,-351.733,0,-313.502	1/2:167:0,86,81:0:0:86,81:3026,2900:-483.179,-236.852,-210.964,-246.682,0,-222.298	1/1:50:0,50,0:0:0:50,0:1774,0:-159.94,-15.0515,0,-159.94,-15.0515,-159.94	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:83:0,83,0:0:0:83,0:2939,0:-264.708,-24.9855,0,-264.708,-24.9855,-264.708	1/1:35:0,35,0:0:0:35,0:1241,0:-111.994,-10.5361,0,-111.994,-10.5361,-111.994	1/1:181:0,181,0:0:0:181,0:6352,0:-571.768,-54.4864,0,-571.768,-54.4864,-571.768	1/1:64:0,64,0:0:0:64,0:2261,0:-203.731,-19.2659,0,-203.731,-19.2659,-203.731	1/2:73:0,34,39:0:0:34,39:1192,1396:-211.175,-114.199,-103.964,-97.3303,0,-85.5902	1/2:200:0,88,112:0:0:88,112:3119,3993:-579.936,-325.844,-299.354,-254.447,0,-220.732	1/1:173:0,173,0:0:0:173,0:6051,0:-544.697,-52.0782,0,-544.697,-52.0782,-544.697	1/1:217:0,216,0:0:0:216,0:7543,0:-678.296,-65.0225,0,-678.296,-65.0225,-678.296	1/1:173:0,173,0:0:0:173,0:6109,0:-549.892,-52.0782,0,-549.892,-52.0782,-549.892	1/1:131:0,131,0:0:0:131,0:4562,0:-410.751,-39.4349,0,-410.751,-39.4349,-410.751	1/2:129:0,29,100:0:0:29,100:970,3580:-370.836,-292.304,-283.574,-78.871,0,-48.768	1/1:8:0,8,0:0:0:8,0:280,0:-25.5387,-2.40824,0,-25.5387,-2.40824,-25.5387	1/1:94:0,92,2:0:0:92,2:3257,72:-292.99,-27.6948,0,-287.115,-21.4601,-286.513	1/1:64:0,63,1:0:0:63,1:2162,36:-194.483,-18.9649,0,-191.546,-15.6676,-191.245	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:159:0,71,88:0:0:71,88:2492,3141:-459.228,-256.425,-235.052,-203.156,0,-176.666	1/1:63: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chr12	21602260	.	CACG	TACA,TACG	104468	PASS	AB=0.427966,0.569915;ABP=130.649,123.251;AC=141,47;AF=0.75,0.25;AN=188;AO=3306,1623;CIGAR=1X2M1X,1X3M;DP=4939;DPB=4939.75;DPRA=10.6108,1.40473;EPP=7181.9,3527.31;EPPR=0;GTI=7;LEN=4,1;MEANALT=1.6129,2.125;MQM=59.8584,59.9593;MQMR=0;NS=94;NUMALT=2;ODDS=0.453866;PAIRED=0,0;PAIREDR=0;PAO=3,0;PQA=108,0;PQR=0;PRO=0;QA=117754,58214;QR=0;RO=0;RPL=0,0;RPP=7181.9,3527.31;RPPR=0;RPR=3306,1623;RUN=1,1;SAF=3306,1623;SAP=7181.9,3527.31;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28,0:0:0:28,0:1005,0:-90.7662,-8.42884,0,-90.7662,-8.42884,-90.7662	1/2:77:0,32,44:0:0:32,44:1139,1580:-221.716,-128.906,-119.273,-92.8268,0,-79.5815	1/2:147:0,78,69:0:0:78,69:2752,2480:-426.76,-202.682,-179.202,-224.434,0,-203.663	1/1:84:0,84,0:0:0:84,0:3007,0:-270.853,-25.2865,0,-270.853,-25.2865,-270.853	1/2:38:0,15,22:0:0:15,22:526,788:-107.064,-64.2624,-59.7469,-42.7957,0,-36.1731	1/2:27:0,10,17:0:0:10,17:359,612:-79.58,-50.2959,-47.2856,-29.6433,0,-24.5258	1/1:98:0,98,0:0:0:98,0:3518,0:-316.83,-29.5009,0,-316.83,-29.5009,-316.83	1/2:100:0,42,58:0:0:42,58:1504,2065:-291.275,-168.651,-156.008,-122.981,0,-105.521	1/2:46:0,18,28:0:0:18,28:641,1008:-134.851,-82.6075,-77.189,-52.6009,0,-44.1721	1/1:36:0,36,0:0:0:36,0:1277,0:-115.229,-10.8371,0,-115.229,-10.8371,-115.229	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:22:0,11,11:0:0:11,11:396,396:-64.983,-32.6714,-29.3601,-32.6714,0,-29.3601	1/1:12:0,12,0:0:0:12,0:426,0:-38.3179,-3.61236,0,-38.3179,-3.61236,-38.3179	1/1:11:0,11,0:0:0:11,0:390,0:-35.4385,-3.31133,0,-35.4385,-3.31133,-35.4385	1/1:5:0,5,0:0:0:5,0:179,0:-16.4604,-1.50515,0,-16.4604,-1.50515,-16.4604	1/2:8:0,5,3:0:0:5,3:180,104:-23.4951,-8.79971,-7.29456,-15.0469,0,-14.1438	1/1:14:0,14,0:0:0:14,0:496,0:-44.9738,-4.21442,0,-44.9738,-4.21442,-44.9738	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:16:0,16,0:0:0:16,0:563,0:-50.9126,-4.81648,0,-50.9126,-4.81648,-50.9126	1/2:112:0,60,52:0:0:60,52:2136,1872:-327.108,-153.106,-135.044,-174.36,0,-158.706	1/2:74:0,25,48:0:0:25,48:890,1720:-212.961,-140.423,-132.897,-72.6781,0,-58.2287	1/2:130:0,43,87:0:0:43,87:1540,3120:-380.427,-254.837,-241.892,-125.949,0,-99.7591	1/1:77:0,77,0:0:0:77,0:2757,0:-248.372,-23.1793,0,-248.372,-23.1793,-248.372	1/1:57:0,55,2:0:0:55,2:1962,72:-176.409,-16.5567,0,-170.534,-10.322,-169.932	1/1:35:0,35,0:0:0:35,0:1242,0:-112.085,-10.5361,0,-112.085,-10.5361,-112.085	1/2:178:0,81,97:0:0:81,97:2866,3480:-517.648,-284.211,-259.827,-233.793,0,-204.594	1/1:110:0,110,0:0:0:110,0:3924,0:-353.267,-33.1133,0,-353.267,-33.1133,-353.267	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:168:0,67,101:0:0:67,101:2380,3620:-489.442,-295.51,-275.341,-194.289,0,-163.884	1/2:97:0,46,50:0:0:46,50:1632,1784:-278.384,-145.42,-131.573,-132.96,0,-117.909	1/2:103:0,53,49:0:0:53,49:1893,1764:-298.267,-143.933,-127.979,-154.332,0,-139.582	1/2:7:0,3,4:0:0:3,4:100,144:-20.1919,-12.1095,-11.2064,-8.42703,0,-7.22291	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:11:0,5,6:0:0:5,6:180,216:-32.6714,-17.9843,-16.4792,-15.0469,0,-13.2407	1/2:10:0,3,7:0:0:3,7:108,252:-29.734,-20.9217,-20.0187,-9.17208,0,-7.06487	1/2:32:0,13,19:0:0:13,19:467,684:-94.2672,-56.1708,-52.2574,-38.4558,0,-32.7362	1/2:153:0,67,86:0:0:67,86:2365,3077:-443.85,-251.267,-231.098,-192.938,0,-167.05	1/1:11:0,11,0:0:0:11,0:395,0:-35.8922,-3.31133,0,-35.8922,-3.31133,-35.8922	1/2:5:0,2,3:0:0:2,3:72,108:-15.0469,-9.17208,-8.57002,-6.23466,0,-5.33157	1/1:71:0,71,0:0:0:71,0:2545,0:-229.301,-21.3731,0,-229.301,-21.3731,-229.301	1/1:9:0,9,0:0:0:9,0:319,0:-29.0516,-2.70927,0,-29.0516,-2.70927,-29.0516	1/1:76:0,75,0:0:0:75,0:2678,0:-240.906,-22.5773,0,-240.906,-22.5773,-240.906	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/2:77:0,39,38:0:0:39,38:1377,1360:-223.337,-111.261,-99.5213,-112.43,0,-100.991	1/1:76:0,76,0:0:0:76,0:2716,0:-244.683,-22.8783,0,-244.683,-22.8783,-244.683	1/1:118:0,118,0:0:0:118,0:4207,0:-378.256,-35.5215,0,-378.256,-35.5215,-378.256	1/1:91:0,90,0:0:0:90,0:3182,0:-286.323,-27.0927,0,-286.323,-27.0927,-286.323	1/1:83:0,83,0:0:0:83,0:2964,0:-266.991,-24.9855,0,-266.991,-24.9855,-266.991	1/2:115:0,54,61:0:0:54,61:1940,2192:-337.435,-179.183,-162.927,-158.612,0,-140.249	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:90:0,90,0:0:0:90,0:3189,0:-287.218,-27.0927,0,-287.218,-27.0927,-287.218	1/1:32:0,32,0:0:0:32,0:1148,0:-103.63,-9.63296,0,-103.63,-9.63296,-103.63	1/2:9:0,2,7:0:0:2,7:66,248:-25.8876,-20.557,-19.9549,-5.66589,0,-3.55868	1/2:103:0,52,51:0:0:52,51:1849,1832:-300.488,-149.808,-134.155,-151.037,0,-135.684	1/1:42:0,42,0:0:0:42,0:1493,0:-134.636,-12.6433,0,-134.636,-12.6433,-134.636	1/2:5:0,3,2:0:0:3,2:108,72:-15.0469,-6.23466,-5.33157,-9.17208,0,-8.57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chr12	21610767	.	G	A	36281.1	PASS	AB=0.424902;ABP=241.422;AC=45;AF=0.239362;AN=188;AO=2092;CIGAR=1X;DP=11017;DPB=11017;DPRA=1.03075;EPP=4493.76;EPPR=19216.5;GTI=4;LEN=1;MEANALT=1.07843;MQM=41.6114;MQMR=56.8729;NS=94;NUMALT=1;ODDS=2.46299;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=74159;QR=313890;RO=8916;RPL=1233;RPP=148.2;RPPR=269.48;RPR=859;RUN=1;SAF=1239;SAP=157.666;SAR=853;SRF=4996;SRP=284.984;SRR=3920;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:32:32,0:32:1131:0:0:0,-9.63296,-101.583	0/1:67:30,37:30:1057:37:1320:-70.5234,0,-74.872	0/1:156:97,59:97:3436:59:2108:-100.585,0,-261.725	0/0:315:314,1:314:11022:1:36:0,-91.9217,-986.986	0/1:56:38,18:38:1340:18:648:-34.18,0,-103.936	0/1:31:17,14:17:600:14:504:-25.4178,0,-44.7841	0/0:201:201,0:201:7041:0:0:0,-60.507,-631.973	0/1:72:32,40:32:1144:40:1394:-76.7334,0,-81.0903	0/1:49:30,19:30:1051:19:672:-32.3789,0,-79.6483	0/0:179:179,0:179:6320:0:0:0,-53.8844,-568.641	0/0:118:118,0:118:4125:0:0:0,-35.5215,-371.04	0/1:61:33,28:33:1137:28:1008:-50.4009,0,-84.1226	0/0:43:43,0:43:1517:0:0:0,-12.9443,-136.653	0/0:120:120,0:120:4181:0:0:0,-36.1236,-376.346	0/0:112:111,1:111:3870:1:21:0,-31.6188,-345.233	0/1:103:59,44:59:2074:44:1572:-94.3912,0,-155.701	0/0:29:29,0:29:1010:0:0:0,-8.72987,-90.6815	0/0:18:18,0:18:640:0:0:0,-5.41854,-57.7555	0/0:33:33,0:33:1161:0:0:0,-9.93399,-104.561	0/1:254:175,79:175:6239:79:2790:-147.758,0,-484.442	0/1:106:65,41:65:2300:41:1441:-81.7242,0,-174.941	0/1:107:57,50:57:2032:50:1788:-110.253,0,-150.83	0/0:112:112,0:112:3979:0:0:0,-33.7154,-357.774	0/0:145:136,9:136:4811:9:324:0,-20.6502,-409.82	0/0:109:109,0:109:3882:0:0:0,-32.8123,-347.787	0/1:402:259,143:259:9024:143:5056:-310.58,0,-690.868	0/0:273:273,0:273:9736:0:0:0,-82.1812,-874.657	0/0:51:51,0:51:1787:0:0:0,-15.3525,-160.782	0/1:262:181,81:181:6448:81:2862:-146.516,0,-500.119	0/1:115:69,45:69:2443:45:1578:-90.6534,0,-185.35	0/1:125:88,37:88:3110:37:1307:-66.5805,0,-242.021	0/1:18:14,4:14:504:4:140:-5.42739,0,-40.1565	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.4506	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.1956	0/1:11:9,2:9:324:2:68:-1.80998,0,-26.1388	0/1:19:6,13:6:212:13:460:-26.4196,0,-13.5859	0/1:269:129,140:129:4450:140:4983:-333.197,0,-319.28	0/1:140:81,58:81:2868:58:2027:-124.13,0,-215.933	0/0:34:34,0:34:1206:0:0:0,-10.235,-108.512	0/1:7:5,2:5:176:2:72:-3.91054,0,-14.0731	0/0:215:214,0:214:7601:0:0:0,-64.4204,-682.323	0/0:79:79,0:79:2801:0:0:0,-23.7814,-252.002	0/0:169:169,0:169:5981:0:0:0,-50.8741,-536.625	0/0:112:112,0:112:3910:0:0:0,-33.7154,-350.574	0/1:80:41,39:41:1440:39:1362:-93.9135,0,-105.775	0/1:94:48,46:48:1692:46:1629:-104.433,0,-123.906	0/0:117:117,0:117:4150:0:0:0,-35.2205,-372.405	0/0:214:213,1:213:7429:1:36:0,-60.8221,-664.467	0/0:182:181,0:181:6380:0:0:0,-54.4864,-572.693	0/0:217:217,0:217:7634:0:0:0,-65.3235,-686.587	0/1:137:97,40:97:3431:40:1432:-75.3975,0,-267.644	0/0:17:17,0:17:599:0:0:0,-5.11751,-54.2087	0/0:121:121,0:121:4327:0:0:0,-36.4246,-388.769	0/0:109:109,0:109:3854:0:0:0,-32.8123,-345.844	1/1:2:0,2:0:0:2:72:-5.19878,-0.60206,0	0/1:153:106,47:106:3742:47:1654:-86.4065,0,-288.518	0/0:33:33,0:33:1120:0:0:0,-9.93399,-100.318	0/0:14:13,1:13:464:1:36:0,-1.31166,-38.5514	0/0:21:21,0:21:744:0:0:0,-6.32163,-67.2223	0/0:112:112,0:112:3940:0:0:0,-33.7154,-353.616	0/1:150:67,83:67:2290:83:2931:-192.179,0,-161.064	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.4972	0/0:234:234,0:234:8180:0:0:0,-70.441,-735.755	0/1:273:188,85:188:6581:85:3011:-158.033,0,-509.878	0/0:182:176,6:176:6257:6:212:0,-37.4424,-545.142	0/1:95:51,44:51:1820:44:1572:-96.7628,0,-135.168	0/1:156:96,60:96:3419:60:2115:-127.311,0,-260.506	0/1:149:56,92:56:1987:92:3243:-211.38,0,-134.042	0/0:74:74,0:74:2616:0:0:0,-22.2762,-235.058	0/1:50:33,17:33:1155:17:612:-27.086,0,-88.5508	0/1:114:50,64:50:1767:64:2270:-161.287,0,-124.96	0/0:48:48,0:48:1634:0:0:0,-14.4494,-147.272	0/1:41:15,26:15:540:26:913:-51.5243,0,-36.5439	0/1:59:29,30:29:1044:30:1068:-56.0209,0,-76.278	0/1:192:118,74:118:4181:74:2637:-158.128,0,-318.138	0/0:350:347,0:347:12206:0:0:0,-104.457,-1096.41	0/0:106:106,0:106:3750:0:0:0,-31.9092,-335.665	0/1:77:37,40:37:1316:40:1405:-74.0343,0,-95.1938	0/1:15:5,10:5:172:10:352:-20.5253,0,-11.2442	0/0:256:256,0:256:9121:0:0:0,-77.0637,-819.628	0/1:67:48,18:48:1703:18:644:-23.7261,0,-133.065	0/0:379:379,0:379:13349:0:0:0,-114.09,-1199.46	0/0:91:91,0:91:3178:0:0:0,-27.3937,-285.99	0/1:127:64,63:64:2222:63:2256:-145.363,0,-161.743	0/0:126:126,0:126:4317:0:0:0,-37.9298,-388.506	0/0:209:206,3:206:7102:3:108:0,-54.7875,-630.081	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.8874	0/0:46:46,0:46:1607:0:0:0,-13.8474,-144.623	0/1:51:24,27:24:828:27:968:-50.9516,0,-59.4206	0/1:95:50,45:50:1772:45:1608:-100.715,0,-130.792	0/1:166:67,99:67:2378:99:3535:-237.298,0,-163.903	0/1:96:31,65:31:1073:65:2299:-160.045,0,-67.9547	0/0:150:150,0:150:5311:0:0:0,-45.1545,-477.44	0/0:194:194,0:194:6720:0:0:0,-58.3998,-604.31
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chr12	21729455	.	C	T	20620.6	PASS	AB=0.396106;ABP=325.623;AC=43;AF=0.231183;AN=186;AO=1376;CIGAR=1X;DP=7611;DPB=7611;DPRA=1.02884;EPP=2990.96;EPPR=13542.1;GTI=3;LEN=1;MEANALT=1;MQM=59.6519;MQMR=59.9556;NS=93;NUMALT=1;ODDS=1.11415;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49251;QR=222186;RO=6235;RPL=1;RPP=2982.28;RPPR=13498.7;RPR=1375;RUN=1;SAF=1;SAP=2982.28;SAR=1375;SRF=5;SRP=13498.7;SRR=6230;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1167:0:0:0,-9.93399,-105.336	0/1:105:61,44:61:2176:44:1580:-110.883,0,-164.498	0/1:40:24,16:24:852:16:572:-39.7722,0,-64.9592	0/0:182:182,0:182:6493:0:0:0,-54.7875,-583.755	0/1:35:28,7:28:1000:7:244:-11.7483,0,-79.7793	0/1:35:23,12:23:812:12:432:-28.6851,0,-62.8649	0/0:150:150,0:150:5305:0:0:0,-45.1545,-477.579	0/1:81:50,31:50:1780:31:1096:-74.5665,0,-136.099	0/1:65:43,22:43:1519:22:772:-50.2332,0,-117.344	0/0:128:128,0:128:4577:0:0:0,-38.5318,-412.094	0/0:41:41,0:41:1451:0:0:0,-12.3422,-130.885	0/1:43:27,16:27:960:16:572:-38.8563,0,-73.772	0/0:56:56,0:56:1987:0:0:0,-16.8577,-179.104	0/0:81:81,0:81:2859:0:0:0,-24.3834,-257.546	0/0:86:86,0:86:3043:0:0:0,-25.8886,-274.102	0/1:31:21,10:21:747:10:360:-23.4124,0,-58.2224	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/0:64:64,0:64:2279:0:0:0,-19.2659,-205.372	0/0:27:27,0:27:964:0:0:0,-8.12781,-87.0768	0/1:147:84,63:84:2992:63:2260:-159.397,0,-225.233	0/1:96:68,28:68:2412:28:1004:-61.7688,0,-188.438	0/1:76:34,42:34:1202:42:1508:-113.108,0,-85.6059	0/0:104:104,0:104:3713:0:0:0,-31.3071,-334.364	0/0:116:111,5:111:3968:5:180:0,-18.3674,-340.759	0/0:78:78,0:78:2775:0:0:0,-23.4803,-249.991	0/1:182:111,71:111:3976:71:2515:-171.649,0,-303.243	0/0:178:178,0:178:6348:0:0:0,-53.5833,-571.414	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:245:166,79:166:5951:79:2836:-181.726,0,-461.943	0/1:158:81,77:81:2885:77:2768:-201.658,0,-212.323	0/1:115:49,66:49:1737:66:2355:-177.498,0,-121.994	.:.:.:.:.:.:.:.	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:3,1:3:100:1:36:-2.39415,0,-8.12632	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:118:92,26:92:3264:26:936:-49.0095,0,-258.459	0/1:103:65,38:65:2328:38:1341:-89.9607,0,-178.774	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:194:194,0:194:6922:0:0:0,-58.3998,-623.044	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/0:114:114,0:114:4046:0:0:0,-34.3174,-364.327	0/0:75:75,0:75:2676:0:0:0,-22.5772,-241.086	0/1:50:24,26:24:851:26:932:-69.1474,0,-61.858	0/1:119:81,38:81:2896:38:1368:-87.5538,0,-225.039	0/0:68:68,0:68:2428:0:0:0,-20.47,-218.765	0/0:160:160,0:160:5675:0:0:0,-48.1648,-510.87	0/0:160:160,0:160:5695:0:0:0,-48.1648,-512.668	0/0:127:125,2:125:4479:2:72:0,-31.3941,-396.072	0/1:120:81,39:81:2896:39:1404:-90.5357,0,-224.753	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:115:115,0:115:4110:0:0:0,-34.6184,-370.084	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.433	0/1:8:4,4:4:140:4:144:-10.9054,0,-10.5316	0/1:80:58,22:58:2056:22:792:-47.3825,0,-161.219	0/0:68:68,0:68:2436:0:0:0,-20.47,-219.495	0/1:15:13,2:13:464:2:72:-2.32127,0,-37.5821	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/0:71:71,0:71:2528:0:0:0,-21.3731,-227.772	0/1:91:47,44:47:1676:44:1580:-115.059,0,-123.733	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:220:220,0:220:7863:0:0:0,-66.2266,-707.698	0/1:136:71,65:71:2544:65:2336:-169.467,0,-188.271	0/0:81:79,2:79:2801:2:72:0,-17.5467,-245.465	0/1:73:35,38:35:1260:38:1364:-101.086,0,-91.7303	0/1:172:102,70:102:3635:70:2497:-173.204,0,-275.579	0/1:61:18,43:18:648:43:1540:-120.526,0,-40.2881	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.67	0/1:57:37,20:37:1320:20:716:-47.5983,0,-101.943	0/1:47:36,11:36:1288:11:396:-21.7771,0,-102.075	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:107:72,35:72:2564:35:1256:-81.0653,0,-198.8	0/1:45:19,26:19:676:26:928:-70.2919,0,-47.6216	0/1:142:100,42:100:3577:42:1496:-92.1777,0,-279.389	0/0:156:154,2:154:5516:2:72:0,-40.124,-489.693	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.479	0/1:101:63,38:63:2241:38:1355:-91.8375,0,-171.548	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/1:81:51,30:51:1809:30:1064:-71.6882,0,-138.706	0/0:194:194,0:194:6916:0:0:0,-58.3998,-622.154	0/0:74:73,1:73:2588:1:36:0,-18.6779,-229.569	0/1:62:32,30:32:1133:30:1080:-78.8494,0,-83.6128	0/0:86:86,0:86:3063:0:0:0,-25.8886,-275.899	0/0:131:131,0:131:4646:0:0:0,-39.4349,-418.306	0/0:51:51,0:51:1794:0:0:0,-15.3525,-161.741	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47	0/1:47:32,15:32:1144:15:540:-34.7835,0,-89.1211	0/1:33:21,12:21:748:12:432:-29.2872,0,-57.7113	0/1:48:27,21:27:963:21:756:-53.9178,0,-72.5365	0/1:57:18,39:18:648:39:1404:-109.251,0,-41.4932	0/0:69:68,1:68:2417:1:36:0,-17.1728,-214.179	0/0:84:84,0:84:2974:0:0:0,-25.2865,-267.894
chr12	21859953	.	CA	CG,TG	72090.7	PASS	AB=0.524835,0.474566;ABP=11.9626,12.3992;AC=141,47;AF=0.75,0.25;AN=188;AO=2559,810;CIGAR=1M1X,2X;DP=3373;DPB=3373.5;DPRA=0,1.03403;EPP=5559.81,1761.9;EPPR=0;GTI=4;LEN=1,2;MEANALT=1.58511,2.03922;MQM=59.9859,59.9247;MQMR=0;NS=94;NUMALT=2;ODDS=1.25874;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=91501,28620;QR=0;RO=0;RPL=0,0;RPP=5559.81,1761.9;RPPR=0;RPR=2559,810;RUN=1,1;SAF=2559,810;SAP=5559.81,1761.9;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21,0:0:0:21,0:756,0:-68.3672,-6.32163,0,-68.3672,-6.32163,-68.3672	1/2:40:0,16,24:0:0:16,24:567,860:-116.685,-70.4956,-65.6791,-46.5451,0,-39.3204	1/2:78:0,55,23:0:0:55,23:1949,809:-224.709,-65.9334,-49.3768,-159.127,0,-152.204	1/1:52:0,52,0:0:0:52,0:1868,0:-168.399,-15.6536,0,-168.399,-15.6536,-168.399	1/2:26:0,14,12:0:0:14,12:504,428:-76.3721,-35.2464,-31.032,-41.4837,0,-37.8713	1/2:6:0,4,2:0:0:4,2:144,72:-17.9843,-6.23466,-5.03054,-12.1095,0,-11.5074	1/1:25:0,25,0:0:0:25,0:881,0:-79.6059,-7.52575,0,-79.6059,-7.52575,-79.6059	1/2:51:0,21,30:0:0:21,30:756,1054:-147.827,-86.1377,-79.8161,-62.0456,0,-53.0147	1/2:16:0,5,11:0:0:5,11:180,396:-47.3585,-32.6714,-31.1663,-15.0469,0,-11.7356	1/1:31:0,30,0:0:0:30,0:1057,0:-95.0794,-9.0309,0,-95.0794,-9.0309,-95.0794	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/2:30:0,15,15:0:0:15,15:540,527:-87.2816,-43.2159,-38.7005,-44.4211,0,-39.9056	1/1:23:0,22,1:0:0:22,1:777,36:-69.8908,-6.62266,0,-66.9531,-3.32542,-66.6521	1/1:33:0,33,0:0:0:33,0:1180,0:-106.508,-9.93399,0,-106.508,-9.93399,-106.508	1/1:25:0,24,1:0:0:24,1:860,36:-77.3621,-7.22472,0,-74.4246,-3.92748,-74.1236	1/2:21:0,12,9:0:0:12,9:432,324:-62.0456,-26.7966,-23.1842,-35.6088,0,-32.8996	1/1:39:0,39,0:0:0:39,0:1396,0:-125.939,-11.7402,0,-125.939,-11.7402,-125.939	1/1:17:0,17,0:0:0:17,0:608,0:-55.052,-5.11751,0,-55.052,-5.11751,-55.052	1/1:14:0,14,0:0:0:14,0:496,0:-44.9743,-4.21442,0,-44.9743,-4.21442,-44.9743	1/2:83:0,50,33:0:0:50,33:1781,1180:-241.736,-96.5735,-81.522,-145.519,0,-135.585	1/2:34:0,16,18:0:0:16,18:568,615:-96.5361,-50.2493,-45.4328,-46.6354,0,-41.2168	1/1:68:0,68,0:0:0:68,0:2410,0:-217.154,-20.47,0,-217.154,-20.47,-217.154	1/1:34:0,34,0:0:0:34,0:1216,0:-109.747,-10.235,0,-109.747,-10.235,-109.747	1/1:44:0,42,2:0:0:42,2:1489,70:-133.942,-12.6433,0,-128.247,-6.59799,-127.644	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/2:103:0,48,55:0:0:48,55:1728,1976:-302.555,-161.558,-147.109,-141.356,0,-124.799	1/1:83:0,83,0:0:0:83,0:2969,0:-267.441,-24.9855,0,-267.441,-24.9855,-267.441	1/2:11:0,10,1:0:0:10,1:360,36:-32.6714,-3.29724,-0.286945,-29.734,0,-29.433	1/2:107:0,65,42:0:0:65,42:2332,1483:-311.337,-121.119,-101.552,-190.573,0,-177.929	1/2:50:0,30,20:0:0:30,20:1080,705:-145.88,-57.7533,-48.7224,-88.4823,0,-82.4617	1/2:45:0,21,24:0:0:21,24:756,860:-132.184,-70.4973,-64.1757,-62.0456,0,-54.8209	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/1:8:0,8,0:0:0:8,0:273,0:-24.9002,-2.40824,0,-24.9002,-2.40824,-24.9002	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:8:0,7,1:0:0:7,1:252,36:-23.8592,-3.29724,-1.19003,-20.9217,0,-20.6207	2/2:12:0,1,11:0:0:1,11:36,396:-35.6229,-32.6855,-32.3845,-3.31133,-0.0140851,0	1/2:55:0,23,32:0:0:23,32:826,1139:-160.568,-93.1851,-86.2614,-67.7401,0,-58.1072	1/2:68:0,31,37:0:0:31,37:1089,1282:-193.174,-104.537,-95.2053,-88.9854,0,-77.8473	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/1:50:0,50,0:0:0:50,0:1792,0:-161.562,-15.0515,0,-161.562,-15.0515,-161.562	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:64:0,64,0:0:0:64,0:2296,0:-206.901,-19.2659,0,-206.901,-19.2659,-206.901	1/1:21:0,21,0:0:0:21,0:755,0:-68.2771,-6.32163,0,-68.2771,-6.32163,-68.2771	1/2:25:0,12,13:0:0:12,13:428,455:-72.2614,-37.3683,-33.7559,-35.2464,0,-31.3331	1/2:27:0,17,10:0:0:17,10:608,360:-79.3096,-29.734,-24.6165,-49.9345,0,-46.9242	1/1:34:0,34,0:0:0:34,0:1216,0:-109.747,-10.235,0,-109.747,-10.235,-109.747	1/1:67:0,67,0:0:0:67,0:2397,0:-215.985,-20.169,0,-215.985,-20.169,-215.985	1/1:40:0,40,0:0:0:40,0:1417,0:-127.825,-12.0412,0,-127.825,-12.0412,-127.825	1/1:51:0,49,1:0:0:49,1:1764,34:-158.746,-14.7505,0,-155.989,-11.9475,-155.688	1/2:67:0,33,34:0:0:33,34:1184,1218:-196.268,-99.692,-89.758,-96.9343,0,-86.6993	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:63:0,63,0:0:0:63,0:2241,0:-201.952,-18.9649,0,-201.952,-18.9649,-201.952	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:9:0,5,4:0:0:5,4:176,142:-26.2514,-11.9251,-10.4199,-14.6799,0,-13.4757	1/2:53:0,30,23:0:0:30,23:1080,780:-151.72,-63.5854,-54.5545,-88.4823,0,-81.5587	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/2:11:0,9,2:0:0:9,2:324,72:-32.6714,-6.23466,-3.52539,-26.7966,0,-26.1945	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3154,-8.42884,0,-90.3154,-8.42884,-90.3154	1/2:76:0,40,36:0:0:40,36:1436,1271:-220.995,-103.854,-91.8132,-117.496,0,-106.659	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:82:0,81,0:0:0:81,0:2896,0:-260.514,-24.3834,0,-260.514,-24.3834,-260.514	1/2:65:0,31,34:0:0:31,34:1093,1218:-188.683,-99.692,-90.36,-89.3466,0,-79.1116	1/1:32:0,31,1:0:0:31,1:1116,25:-100.498,-9.33193,0,-98.5529,-7.1331,-98.2518	1/2:41:0,18,22:0:0:18,22:633,763:-113.529,-62.0017,-56.5832,-51.5171,0,-44.8945	1/2:52:0,29,23:0:0:29,23:1044,778:-148.603,-63.4056,-54.6758,-85.5449,0,-78.6212	1/2:29:0,4,25:0:0:4,25:144,894:-85.0046,-73.2546,-72.0505,-12.1095,0,-4.58375	1/2:10:0,9,1:0:0:9,1:324,36:-29.734,-3.29724,-0.587975,-26.7966,0,-26.4956	1/2:28:0,19,9:0:0:19,9:672,311:-80.3534,-25.6142,-19.8946,-55.0873,0,-52.378	1/2:40:0,20,20:0:0:20,20:720,718:-117.677,-58.9278,-52.9072,-59.1082,0,-53.0876	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:48:0,24,24:0:0:24,24:853,827:-137.016,-67.5179,-60.2932,-69.8483,0,-62.6236	1/2:13:0,9,4:0:0:9,4:324,142:-38.3653,-11.9251,-9.21582,-26.7966,0,-25.5925	1/2:26:0,12,14:0:0:12,14:432,485:-75.0181,-39.7629,-36.1505,-35.6088,0,-31.3944	1/1:55:0,55,0:0:0:55,0:1972,0:-177.755,-16.5567,0,-177.755,-16.5567,-177.755	1/1:66:0,66,0:0:0:66,0:2372,0:-213.678,-19.868,0,-213.678,-19.868,-213.678	1/2:17:0,12,5:0:0:12,5:432,180:-50.2959,-15.0469,-11.4346,-35.6088,0,-34.1037	1/2:6:0,4,2:0:0:4,2:144,72:-17.9843,-6.23466,-5.03054,-12.1095,0,-11.5074	1/1:29:0,29,0:0:0:29,0:1044,0:-94.2748,-8.72987,0,-94.2748,-8.72987,-94.2748	1/2:55:0,28,27:0:0:28,27:989,968:-159.848,-79.3098,-70.8809,-80.8942,0,-72.7664	1/1:89:0,89,0:0:0:89,0:3179,0:-286.335,-26.7917,0,-286.335,-26.7917,-286.335	1/1:45:0,45,0:0:0:45,0:1616,0:-145.73,-13.5464,0,-145.73,-13.5464,-145.73	1/2:26:0,12,14:0:0:12,14:432,491:-75.5597,-40.3064,-36.694,-35.6088,0,-31.3944	1/1:35:0,35,0:0:0:35,0:1252,0:-112.985,-10.5361,0,-112.985,-10.5361,-112.985	1/1:26:0,26,0:0:0:26,0:932,0:-84.1989,-7.82678,0,-84.1989,-7.82678,-84.1989	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:41:0,41,0:0:0:41,0:1467,0:-132.317,-12.3422,0,-132.317,-12.3422,-132.317	1/2:31:0,18,13:0:0:18,13:648,453:-90.067,-37.1868,-31.7682,-53.2333,0,-49.32	1/2:12:0,6,6:0:0:6,6:216,216:-35.6088,-17.9843,-16.1782,-17.9843,0,-16.1782	1/2:38:0,22,16:0:0:22,16:792,563:-110.81,-46.1819,-39.5592,-64.983,0,-60.1665	1/2:23:0,6,17:0:0:6,17:216,612:-67.9204,-50.2959,-48.4897,-17.9843,0,-12.8668	1/1:52:0,52,0:0:0:52,0:1857,0:-167.41,-15.6536,0,-167.41,-15.6536,-167.41	1/1:22:0,22,0:0:0:22,0:784,0:-70.8839,-6.62266,0,-70.8839,-6.62266,-70.8839
chr12	21971007	.	GT	GA,TA	458990	PASS	AB=0.490298,0.508663;ABP=10.089,8.65342;AC=143,45;AF=0.760638,0.239362;AN=188;AO=12513,4429;CIGAR=1M1X,2X;DP=16960;DPB=16960;DPRA=0,1.09471;EPP=27148.6,9611.78;EPPR=9.52472;GTI=1;LEN=1,2;MEANALT=1.74468,2.16071;MQM=55.4311,53.5141;MQMR=60;NS=94;NUMALT=2;ODDS=1.18106;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=444943,155345;QR=73;RO=3;RPL=6997,2360;RPP=383.64,44.5281;RPPR=3.73412;RPR=5516,2069;RUN=1,1;SAF=6994,2359;SAP=380.562,43.9594;SAR=5519,2070;SRF=1;SRP=3.73412;SRR=2;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:73:0,72,1:0:0:72,1:2559,36:-229.537,-21.6742,0,-226.6,-18.3769,-226.299	1/2:219:0,113,106:0:0:113,106:4019,3754:-631.901,-304.724,-270.707,-327.531,0,-295.622	1/2:244:0,126,118:0:0:126,118:4444,4133:-694.077,-333.599,-295.669,-360.827,0,-325.306	1/1:320:0,319,1:0:0:319,1:11359,36:-1018.57,-96.0286,0,-1015.63,-92.7313,-1015.33	1/2:100:0,63,36:0:0:63,36:2247,1260:-284.318,-101.456,-82.4909,-182.853,0,-172.015	1/2:119:0,63,56:0:0:63,56:2237,1984:-343.51,-161.484,-142.519,-182.381,0,-165.523	1/1:173:0,173,0:0:0:173,0:6189,0:-556.432,-52.0782,0,-556.432,-52.0782,-556.432	1/2:348:1,188,159:1:23:188,159:6662,5607:-993.579,-452.862,-398.037,-539.371,0,-493.276	1/2:203:0,110,93:0:0:110,93:3931,3210:-577.964,-259.073,-225.96,-319.239,0,-291.244	1/1:249:0,249,0:0:0:249,0:8819,0:-787.524,-74.9565,0,-787.524,-74.9565,-787.524	1/1:117:0,117,0:0:0:117,0:4154,0:-373.074,-35.2205,0,-373.074,-35.2205,-373.074	1/2:220:0,109,111:0:0:109,111:3873,3869:-624.579,-311.254,-278.442,-313.673,0,-280.259	1/1:184:0,184,0:0:0:184,0:6566,0:-589.531,-55.3895,0,-589.531,-55.3895,-589.531	1/1:145:0,144,0:0:0:144,0:5084,0:-456.563,-43.3483,0,-456.563,-43.3483,-456.563	1/1:185:0,185,0:0:0:185,0:6593,0:-591.404,-55.6906,0,-591.404,-55.6906,-591.404	1/2:132:0,59,73:0:0:59,73:2103,2570:-379.352,-208.566,-190.805,-171.14,0,-149.164	1/1:126:0,126,0:0:0:126,0:4420,0:-397.413,-37.9298,0,-397.413,-37.9298,-397.413	1/1:118:0,118,0:0:0:118,0:4219,0:-379.21,-35.5215,0,-379.21,-35.5215,-379.21	1/1:94:0,94,0:0:0:94,0:3310,0:-297.288,-28.2968,0,-297.288,-28.2968,-297.288	1/2:288:0,134,154:0:0:134,154:4801,5390:-826.61,-436.927,-396.588,-390.036,0,-343.678	1/2:268:0,133,135:0:0:133,135:4726,4702:-763.951,-380.381,-340.344,-383.92,0,-343.281	1/1:96:0,95,1:0:0:95,1:3404,36:-305.791,-28.5979,0,-302.853,-25.3006,-302.552	1/1:183:0,183,0:0:0:183,0:6543,0:-586.58,-55.0885,0,-586.58,-55.0885,-586.58	1/1:172:0,165,7:0:0:165,7:5842,225:-525.119,-49.67,0,-506.988,-31.2158,-504.881	1/1:101:0,101,0:0:0:101,0:3624,0:-325.788,-30.404,0,-325.788,-30.404,-325.788	1/2:462:0,233,229:0:0:233,229:8304,8013:-1323.69,-648.881,-578.741,-675.157,0,-606.222	1/1:382:0,382,0:0:0:382,0:13592,0:-1220.1,-114.993,0,-1220.1,-114.993,-1220.1	1/1:101:0,101,0:0:0:101,0:3594,0:-323.003,-30.404,0,-323.003,-30.404,-323.003	1/2:383:0,186,197:0:0:186,197:6589,7000:-1103.18,-567.395,-511.403,-536.14,0,-476.837	1/2:251:0,130,120:0:0:130,120:4640,4225:-720.679,-342.99,-303.856,-377.69,0,-341.566	1/2:236:0,111,123:0:0:111,123:3939,4301:-668.839,-348.438,-315.024,-320.509,0,-283.482	1/2:8:0,5,3:0:0:5,3:180,108:-23.7453,-9.08398,-7.57883,-15.0189,0,-14.1158	1/1:18:0,17,1:0:0:17,1:597,36:-53.5048,-5.11751,0,-50.5953,-1.85173,-50.2943	1/1:9:0,9,0:0:0:9,0:313,0:-28.0447,-2.70927,0,-28.0447,-2.70927,-28.0447	1/2:12:0,4,8:0:0:4,8:144,277:-34.2773,-22.7314,-21.5273,-11.8968,0,-9.48854	1/2:21:0,10,11:0:0:10,11:356,379:-59.8536,-30.9285,-27.9182,-29.274,0,-25.9626	1/2:445:0,221,223:0:0:221,223:7826,7844:-1269.9,-634.659,-568.131,-635.235,0,-568.105	1/2:187:0,88,99:0:0:88,99:3151,3455:-535.548,-279.176,-252.685,-256.724,0,-226.922	1/1:152:0,152,0:0:0:152,0:5397,0:-483.616,-45.7566,0,-483.616,-45.7566,-483.616	1/2:7:0,1,6:0:0:1,6:36,216:-20.764,-17.8401,-17.5391,-3.28202,0,-1.47584	1/1:258:0,258,0:0:0:258,0:9175,0:-824.119,-77.6657,0,-824.119,-77.6657,-824.119	1/1:78:0,78,0:0:0:78,0:2796,0:-251.382,-23.4803,0,-251.382,-23.4803,-251.382	1/1:249:0,247,2:0:0:247,2:8818,72:-789.359,-74.3544,0,-783.484,-68.1197,-782.882	1/1:178:0,178,0:0:0:178,0:6318,0:-567.681,-53.5833,0,-567.681,-53.5833,-567.681	1/2:137:0,59,78:0:0:59,78:2085,2732:-388.009,-218.793,-201.032,-169.565,0,-146.085	1/2:173:0,115,58:0:0:115,58:4112,2055:-501.735,-167.129,-132.51,-334.961,0,-317.501	1/1:218:0,215,2:0:0:215,2:7601,72:-682.155,-64.7215,0,-676.28,-58.8466,-675.678	1/1:287:0,285,0:0:0:285,0:10138,0:-909.277,-85.7936,0,-909.277,-85.7936,-909.277	1/1:177:0,177,0:0:0:177,0:6290,0:-564.932,-53.2823,0,-564.932,-53.2823,-564.932	1/2:235:0,107,128:0:0:107,128:3816,4497:-674.893,-364.397,-332.186,-310.85,0,-272.318	1/2:227:0,111,116:0:0:111,116:3943,3996:-643.459,-323.161,-289.746,-320.647,0,-285.727	1/1:18:0,18,0:0:0:18,0:640,0:-57.8282,-5.41854,0,-57.8282,-5.41854,-57.8282	1/1:181:0,181,0:0:0:181,0:6440,0:-577.912,-54.4864,0,-577.912,-54.4864,-577.912	1/1:129:0,129,0:0:0:129,0:4600,0:-413.045,-38.8329,0,-413.045,-38.8329,-413.045	1/2:28:0,15,13:0:0:15,13:528,466:-81.079,-38.1939,-33.6785,-43.2393,0,-39.3259	1/2: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chr12	21974630	.	C	G	74645.6	PASS	AB=0.438128;ABP=98.9382;AC=132;AF=0.709677;AN=186;AO=3679;CIGAR=1X;DP=5355;DPB=5355;DPRA=16.1939;EPP=7991.86;EPPR=3631.54;GTI=1;LEN=1;MEANALT=1.02222;MQM=59.9049;MQMR=59.9408;NS=93;NUMALT=1;ODDS=0.156412;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131261;QR=59720;RO=1671;RPL=3679;RPP=7991.86;RPPR=3631.54;RPR=0;RUN=1;SAF=0;SAP=7991.86;SAR=3679;SRF=0;SRP=3631.54;SRR=1671;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1099:-99.2177,-9.33193,0	0/1:46:26,20:26:932:20:712:-50.5593,0,-70.3515	0/1:156:76,80:76:2736:80:2861:-210.765,0,-199.521	1/1:114:6,108:6:216:108:3847:-326.564,-14.5269,0	0/1:29:9,20:9:324:20:720:-56.3989,0,-20.776	0/1:22:15,7:15:536:7:248:-16.0415,0,-41.9522	1/1:65:3,59:3:104:59:2104:-179.92,-9.31423,0	0/1:63:23,40:23:790:40:1436:-110.573,0,-52.4476	0/1:68:39,29:39:1404:29:1033:-72.8132,0,-106.189	1/1:46:0,46:0:0:46:1643:-148.158,-13.8474,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:78:42,36:42:1508:36:1296:-93.459,0,-112.534	1/1:47:2,45:2:72:45:1608:-138.173,-7.31169,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:51:1,50:1:36:50:1792:-157.964,-11.7543,0	0/1:30:14,16:14:504:16:572:-42.7825,0,-36.6672	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:15:2,13:2:72:13:468:-37.9442,0,-2.32127	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:102:56,46:56:2012:46:1640:-117.125,0,-150.645	0/1:162:96,66:96:3417:66:2351:-163.077,0,-258.972	1/1:69:3,66:3:108:66:2344:-201.09,-10.6959,0	1/1:54:1,53:1:36:53:1878:-165.699,-12.6573,0	0/1:43:6,37:6:212:37:1324:-106.518,0,-6.48051	1/1:44:0,44:0:0:44:1576:-142.132,-13.2453,0	0/1:145:82,63:82:2929:63:2256:-159.653,0,-220.194	1/1:150:0,150:0:0:150:5354:-481.982,-45.1545,0	1/1:15:0,15:0:0:15:527:-47.7602,-4.51545,0	0/1:161:81,80:81:2908:80:2852:-208.452,0,-213.489	0/1:63:42,21:42:1508:21:752:-49.0414,0,-117.05	0/1:54:33,21:33:1180:21:748:-51.3897,0,-89.5506	0/1:10:2,8:2:72:8:284:-22.8931,0,-3.82642	1/1:7:0,7:0:0:7:248:-22.6626,-2.10721,0	0/1:4:2,2:2:72:2:72:-5.43246,0,-5.6326	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:120:70,50:70:2504:50:1767:-123.172,0,-189.489	0/1:89:48,41:48:1724:41:1451:-104.094,0,-128.654	1/1:28:1,27:1:36:27:972:-84.1996,-4.83057,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:75:3,72:3:108:72:2567:-221.205,-12.5021,0	1/1:20:0,20:0:0:20:707:-63.9369,-6.0206,0	1/1:92:0,92:0:0:92:3269:-293.563,-27.6948,0	1/1:32:0,32:0:0:32:1126:-101.647,-9.63296,0	0/1:18:5,13:5:176:13:442:-34.6857,0,-10.7665	0/1:61:38,23:38:1345:23:828:-56.4813,0,-102.985	1/1:50:2,48:2:72:48:1716:-147.889,-8.21478,0	1/1:116:3,113:3:104:113:4023:-352.555,-25.2167,0	1/1:65:0,65:0:0:65:2324:-209.42,-19.567,0	0/1:55:35,20:35:1260:20:708:-47.4889,0,-97.1488	0/1:142:70,72:70:2489:72:2576:-189.343,0,-181.516	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:152:0,152:0:0:152:5452:-490.805,-45.7566,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:67:46,21:46:1648:21:740:-46.7544,0,-128.31	1/1:15:1,14:1:36:14:504:-42.0998,-0.917175,0	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:22:0,22:0:0:22:786:-71.0641,-6.62266,0	0/1:66:28,38:28:1008:38:1356:-102.458,0,-70.5399	.:.:.:.:.:.:.:.	1/1:132:0,132:0:0:132:4703:-423.432,-39.736,0	0/1:153:105,48:105:3761:48:1708:-107.948,0,-292.628	1/1:26:1,25:1:36:25:900:-77.7227,-4.22851,0	0/1:44:27,17:27:957:17:604:-41.4449,0,-73.1985	0/1:116:66,50:66:2330:50:1789:-126.373,0,-175.038	0/1:113:90,23:90:3213:23:824:-40.4669,0,-255.375	0/1:9:1,8:1:36:8:279:-22.7383,0,-0.889005	0/1:45:28,17:28:1008:17:612:-41.8671,0,-77.49	0/1:37:22,15:22:788:15:540:-37.7984,0,-60.1067	1/1:17:0,17:0:0:17:604:-54.6897,-5.11751,0	1/1:73:1,72:1:36:72:2568:-227.772,-18.3769,0	0/1:61:42,19:42:1504:19:671:-42.353,0,-117.292	0/1:81:53,28:53:1877:28:1004:-66.2924,0,-144.824	1/1:118:0,118:0:0:118:4216:-379.619,-35.5215,0	1/1:61:3,58:3:108:58:2084:-177.755,-8.28766,0	0/1:57:27,30:27:964:30:1063:-78.8221,0,-69.9181	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	1/1:55:1,54:1:32:54:1928:-170.597,-13.3573,0	0/1:44:18,26:18:644:26:928:-70.5929,0,-45.0453	1/1:164:5,159:5:172:159:5662:-493.875,-33.5511,0	1/1:62:2,60:2:68:60:2148:-187.13,-12.2062,0	0/1:52:35,17:35:1252:17:603:-38.9459,0,-97.3315	1/1:27:0,27:0:0:27:959:-86.6254,-8.12781,0	1/1:69:0,67:0:0:67:2397:-215.624,-20.169,0	0/1:25:8,17:8:284:17:612:-47.8877,0,-18.3776	1/1:47:0,47:0:0:47:1676:-151.11,-14.1484,0	0/1:35:24,11:24:864:11:380:-23.9954,0,-67.5465	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:49:30,19:30:1076:19:669:-45.7835,0,-82.4024	0/1:54:43,11:43:1540:11:396:-19.7189,0,-122.637	1/1:113:0,113:0:0:113:4027:-362.619,-34.0164,0	1/1:71:0,71:0:0:71:2552:-229.928,-21.3731,0
chr12	22018031	.	C	G	22671.5	PASS	AB=0.477067;ABP=16.1568;AC=44;AF=0.234043;AN=188;AO=1383;CIGAR=1X;DP=5672;DPB=5672;DPRA=1.3381;EPP=2980.16;EPPR=9218.94;GTI=1;LEN=1;MEANALT=1.04167;MQM=58.0622;MQMR=59.8261;NS=94;NUMALT=1;ODDS=1.98219;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49341;QR=152238;RO=4284;RPL=1380;RPP=2980.16;RPPR=9210.3;RPR=3;RUN=1;SAF=1383;SAP=3006.16;SAR=0;SRF=4283;SRP=9296.91;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:663:0:0:0,-5.71957,-59.9935	0/1:92:53,39:53:1900:39:1391:-97.7935,0,-143.579	0/1:63:33,30:33:1188:30:1076:-78.1798,0,-87.7727	0/0:105:104,1:104:3688:1:36:0,-28.0099,-328.518	0/1:52:31,21:31:1108:21:752:-52.219,0,-84.355	0/1:48:17,31:17:612:31:1110:-85.7615,0,-40.964	0/0:73:73,0:73:2598:0:0:0,-21.9752,-234.067	0/1:88:41,47:41:1472:47:1641:-121.483,0,-106.25	0/1:53:30,23:30:1068:23:828:-58.8895,0,-80.4693	0/0:67:67,0:67:2374:0:0:0,-20.169,-213.918	0/0:39:39,0:39:1377:0:0:0,-11.7402,-124.227	0/1:40:20,20:20:720:20:716:-52.7265,0,-53.0876	0/0:50:50,0:50:1754:0:0:0,-15.0515,-158.14	0/0:65:65,0:65:2309:0:0:0,-19.5669,-208.069	0/0:50:50,0:50:1765:0:0:0,-15.0515,-159.125	0/1:43:17,26:17:597:26:932:-71.2117,0,-41.1056	0/0:44:44,0:44:1571:0:0:0,-13.2453,-141.681	0/0:48:48,0:48:1704:0:0:0,-14.4494,-153.615	0/0:30:30,0:30:1054:0:0:0,-9.0309,-95.1692	0/1:83:45,38:45:1591:38:1360:-97.1189,0,-118.481	0/1:150:85,65:85:3023:65:2315:-163.089,0,-226.777	0/0:72:72,0:72:2552:0:0:0,-21.6742,-229.932	0/0:21:21,0:21:748:0:0:0,-6.32163,-67.6444	0/0:40:39,1:39:1391:1:36:0,-8.44393,-121.891	0/0:65:65,0:65:2308:0:0:0,-19.5669,-207.973	0/1:225:122,103:122:4339:103:3679:-262.872,0,-322.952	0/0:154:153,0:153:5471:0:0:0,-46.0576,-492.119	0/0:28:28,0:28:980:0:0:0,-8.42884,-88.5102	0/1:139:75,63:75:2676:63:2252:-160.746,0,-199.178	0/1:85:38,47:38:1360:47:1680:-125.857,0,-96.7972	0/1:77:47,30:47:1675:30:1055:-72.0564,0,-127.857	0/1:3:2,1:2:68:1:36:-2.69418,0,-5.55462	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:145:82,63:82:2921:63:2264:-159.258,0,-219.446	0/1:107:52,55:52:1855:55:1972:-145.443,0,-135.019	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:73:72,0:72:2572:0:0:0,-21.6742,-231.355	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:90:90,0:90:3202:0:0:0,-27.0927,-288.403	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.497	0/1:42:21,21:21:744:21:748:-54.9404,0,-54.6411	0/1:59:21,38:21:748:38:1364:-105.236,0,-49.8561	0/0:61:61,0:61:2169:0:0:0,-18.3628,-195.439	0/0:106:105,0:105:3726:0:0:0,-31.6081,-335.139	0/0:79:79,0:79:2787:0:0:0,-23.7814,-251.024	0/1:85:50,35:50:1796:35:1256:-87.6715,0,-136.279	0/1:107:54,53:54:1906:53:1879:-137.128,0,-139.606	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.994	0/0:27:27,0:27:955:0:0:0,-8.12781,-86.2577	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:71:35,36:35:1242:36:1268:-92.0756,0,-90.709	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:24:24,0:24:852:0:0:0,-7.22472,-77.0004	0/0:30:30,0:30:1063:0:0:0,-9.0309,-95.9808	0/1:94:53,41:53:1900:41:1468:-103.958,0,-142.981	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6633	0/0:68:68,0:68:2431:0:0:0,-20.47,-218.588	0/1:116:58,57:58:2054:57:2044:-149.074,0,-150.139	0/0:42:42,0:42:1495:0:0:0,-12.6433,-134.842	0/1:47:27,20:27:964:20:720:-50.9502,0,-72.906	0/1:79:34,45:34:1216:45:1620:-122.252,0,-85.9652	0/1:34:12,22:12:424:22:792:-61.2739,0,-28.2614	0/0:24:24,0:24:848:0:0:0,-7.22472,-76.6393	0/1:45:19,26:19:671:26:929:-70.3808,0,-47.1694	0/1:62:37,25:37:1313:25:896:-62.2573,0,-99.7996	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:71:71,0:71:2509:0:0:0,-21.3731,-225.825	0/1:42:22,20:22:780:20:716:-52.1245,0,-57.8712	0/1:92:47,45:47:1654:45:1588:-115.47,0,-121.218	0/0:126:126,0:126:4500:0:0:0,-37.9298,-405.17	0/0:95:94,1:94:3321:1:36:0,-24.9996,-295.481	0/1:85:47,38:47:1664:38:1356:-96.7529,0,-124.43	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:89:88,1:88:3135:1:36:0,-23.1944,-278.779	0/1:67:45,22:45:1608:22:780:-50.1629,0,-124.841	0/0:123:123,0:123:4364:0:0:0,-37.0267,-392.654	0/0:94:92,2:92:3253:2:72:0,-21.462,-286.152	0/1:37:19,18:19:684:18:640:-46.7759,0,-50.7522	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.152	0/0:118:118,0:118:4189:0:0:0,-35.5215,-377.188	0/1:29:14,15:14:504:15:523:-38.6686,0,-36.9682	0/0:61:61,0:61:2115:0:0:0,-18.3628,-190.61	0/1:38:15,23:15:522:23:816:-62.3226,0,-35.8681	0/1:25:17,8:17:608:8:288:-18.7352,0,-47.47	0/1:68:47,21:47:1654:21:756:-47.6024,0,-128.675	0/1:45:14,31:14:495:31:1079:-83.8443,0,-31.3367	0/0:56:56,0:56:1972:0:0:0,-16.8577,-177.749	0/0:58:58,0:58:2066:0:0:0,-17.4597,-186.209
chr12	22018043	.	A	T	21832.4	PASS	AB=0.471863;ABP=22.6841;AC=44;AF=0.234043;AN=188;AO=1361;CIGAR=1X;DP=5693;DPB=5693;DPRA=1.33981;EPP=2958.38;EPPR=9381.61;GTI=1;LEN=1;MEANALT=1.0625;MQM=58.122;MQMR=59.8142;NS=94;NUMALT=1;ODDS=3.47868;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48284;QR=155084;RO=4327;RPL=1361;RPP=2958.38;RPPR=9390.29;RPR=0;RUN=1;SAF=1361;SAP=2958.38;SAR=0;SRF=4326;SRP=9390.29;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:91:54,37:54:1936:37:1316:-91.3481,0,-147.118	0/1:61:32,29:32:1152:29:1044:-75.9038,0,-85.1363	0/0:107:107,0:107:3837:0:0:0,-32.2102,-345.517	0/1:50:28,21:28:1008:21:752:-52.7618,0,-75.9036	0/1:49:18,31:18:648:31:1095:-84.1086,0,-43.9014	0/0:77:77,0:77:2759:0:0:0,-23.1793,-248.55	0/1:88:42,46:42:1512:46:1630:-120.493,0,-109.848	0/1:51:30,21:30:1076:21:744:-51.9318,0,-81.7922	0/0:71:71,0:71:2533:0:0:0,-21.3731,-228.22	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/1:42:21,21:21:756:21:756:-55.724,0,-55.724	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.922	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:50:50,0:50:1800:0:0:0,-15.0515,-162.276	0/1:43:17,26:17:612:26:924:-70.4916,0,-42.4629	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.179	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:81:45,36:45:1604:36:1272:-89.8028,0,-120.231	0/1:148:85,63:85:3056:63:2241:-157.034,0,-230.346	0/0:73:73,0:73:2615:0:0:0,-21.9752,-235.597	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7668	0/0:39:38,1:38:1360:1:36:0,-8.1429,-119.103	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.604	0/1:226:126,100:126:4532:100:3564:-252.467,0,-340.003	0/0:158:158,0:158:5671:0:0:0,-47.5627,-510.467	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:138:75,63:75:2692:63:2248:-160.747,0,-200.98	0/1:82:39,43:39:1381:43:1495:-110.114,0,-99.5865	0/1:79:46,32:46:1656:32:1131:-78.2275,0,-125.488	0/1:2:1,1:1:36:1:36:-2.99521,0,-2.99621	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:141:81,60:81:2896:60:2126:-149.09,0,-218.402	0/1:106:52,54:52:1868:54:1919:-140.981,0,-136.36	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:3:3,0:3:100:0:0:0,-0.90309,-9.33044	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.15	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:89:89,0:89:3196:0:0:0,-26.7917,-287.863	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.619	0/1:43:21,22:21:756:22:772:-56.7833,0,-55.4229	0/1:56:20,36:20:716:36:1253:-96.1794,0,-47.8984	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.986	0/0:105:105,0:105:3780:0:0:0,-31.6081,-340.353	0/0:79:79,0:79:2824:0:0:0,-23.7814,-254.354	0/1:85:50,35:50:1800:35:1237:-85.9599,0,-136.639	0/1:106:53,53:53:1900:53:1892:-138.586,0,-139.369	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.566	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4303	0/1:8:2,6:2:72:6:207:-16.5587,0,-4.42848	0/1:68:33,35:33:1188:35:1238:-91.219,0,-86.7576	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:30:30,0:30:1057:0:0:0,-9.0309,-95.439	0/1:95:53,42:53:1908:42:1485:-105.173,0,-143.4	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2066	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.305	0/1:121:60,61:60:2148:61:2168:-158.777,0,-157.15	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.373	0/1:46:27,17:27:968:17:612:-41.7935,0,-73.8106	0/1:78:35,43:35:1260:43:1533:-114.734,0,-90.2251	0/1:34:12,22:12:432:22:784:-60.5532,0,-28.9862	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0817	0/1:43:19,24:19:684:24:849:-63.7802,0,-48.946	0/1:61:36,25:36:1292:25:896:-62.5584,0,-98.2147	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:72:72,0:72:2576:0:0:0,-21.6742,-231.546	0/1:41:22,19:22:788:19:680:-49.1869,0,-58.894	0/1:92:48,44:48:1724:44:1538:-110.976,0,-127.517	0/0:128:127,1:127:4539:1:32:0,-35.3325,-405.478	0/0:96:95,1:95:3392:1:36:0,-25.3006,-300.7	0/1:87:48,39:48:1720:39:1372:-97.5862,0,-128.869	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:91:90,1:90:3224:1:36:0,-23.7965,-286.785	0/1:67:46,21:46:1648:21:744:-47.0279,0,-128.44	0/0:126:126,0:126:4519:0:0:0,-37.9298,-406.594	0/0:99:97,2:97:3476:2:72:0,-22.9672,-306.208	0/1:37:19,18:19:684:18:648:-47.4974,0,-50.7522	0/0:54:53,0:53:1895:0:0:0,-15.9546,-170.463	0/0:121:121,0:121:4324:0:0:0,-36.4246,-389.334	0/1:30:15,15:15:536:15:536:-39.5439,0,-39.5439	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.63	0/1:39:15,24:15:536:24:860:-65.9735,0,-36.8346	0/1:24:17,7:17:608:7:252:-15.7987,0,-47.771	0/1:67:47,20:47:1666:20:704:-43.3645,0,-130.056	0/1:46:14,32:14:504:32:1123:-87.506,0,-31.8507	0/0:57:57,0:57:2026:0:0:0,-17.1587,-182.605	0/0:61:61,0:61:2172:0:0:0,-18.3628,-195.746
chr12	22018049	.	G	A	90360.8	PASS	AB=0.522594;ABP=15.8646;AC=144;AF=0.765957;AN=188;AO=4320;CIGAR=1X;DP=5721;DPB=5721;DPRA=12.2925;EPP=9383.77;EPPR=3034.39;GTI=1;LEN=1;MEANALT=1.01075;MQM=59.8299;MQMR=58.0843;NS=94;NUMALT=1;ODDS=2.6486;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=154333;QR=49891;RO=1400;RPL=4320;RPP=9383.77;RPPR=3043.07;RPR=0;RUN=1;SAF=4320;SAP=9383.77;SAR=0;SRF=1399;SRP=3034.39;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19:0:0:19:669:-60.5339,-5.71957,0	0/1:91:38,53:38:1368:53:1900:-143.88,0,-96.0271	0/1:63:30,33:30:1053:33:1184:-87.4124,0,-76.1137	1/1:106:0,106:0:0:106:3804:-342.554,-31.9092,0	0/1:53:21,32:21:756:32:1152:-88.0131,0,-52.2784	0/1:50:32,18:32:1140:18:644:-43.2391,0,-87.8577	1/1:75:1,74:1:27:74:2656:-236.585,-19.8775,0	0/1:90:48,42:48:1674:42:1508:-108.886,0,-123.842	0/1:53:22,31:22:788:31:1085:-82.0009,0,-55.2902	1/1:69:0,69:0:0:69:2460:-221.655,-20.7711,0	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	0/1:42:21,21:21:747:21:747:-54.911,0,-54.911	1/1:48:0,48:0:0:48:1709:-154.094,-14.4494,0	1/1:66:0,66:0:0:66:2364:-213.018,-19.868,0	1/1:50:0,50:0:0:50:1792:-161.556,-15.0515,0	0/1:42:25,17:25:900:17:612:-42.764,0,-68.6352	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	1/1:49:0,49:0:0:49:1746:-157.394,-14.7505,0	1/1:30:0,29:0:0:29:1044:-93.915,-8.72987,0	0/1:84:40,44:40:1422:44:1580:-117.169,0,-102.392	0/1:152:67,85:67:2390:85:3029:-227.083,0,-169.23	1/1:74:0,74:0:0:74:2652:-238.926,-22.2762,0	1/1:20:0,20:0:0:20:709:-64.1338,-6.0206,0	1/1:40:1,39:1:36:39:1385:-121.35,-8.44393,0	1/1:64:2,62:2:72:62:2201:-191.511,-12.4292,0	0/1:229:104,125:104:3732:125:4482:-334.602,0,-266.443	1/1:159:0,159:0:0:159:5686:-511.819,-47.8638,0	1/1:29:0,29:0:0:29:1036:-93.5539,-8.72987,0	0/1:139:63,76:63:2232:76:2698:-201.219,0,-159.005	0/1:85:45,40:45:1616:40:1432:-103.274,0,-120.101	0/1:77:31,46:31:1103:46:1630:-123.806,0,-76.3737	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69418	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:146:64,82:64:2280:82:2936:-220.495,0,-160.739	0/1:107:55,52:55:1960:52:1872:-136.419,0,-144.373	1/1:50:0,50:0:0:50:1800:-162.282,-15.0515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:72:0,72:0:0:72:2567:-231.267,-21.6742,0	1/1:27:0,27:0:0:27:972:-87.7979,-8.12781,0	1/1:87:0,87:0:0:87:3123:-281.295,-26.1896,0	1/1:42:1,41:1:32:41:1476:-130.015,-9.52222,0	0/1:42:21,21:21:752:21:737:-54.0074,0,-55.248	0/1:57:38,19:38:1356:19:676:-44.0087,0,-105.148	1/1:63:0,63:0:0:63:2264:-203.986,-18.9649,0	1/1:106:0,106:0:0:106:3771:-339.546,-31.9092,0	1/1:77:0,77:0:0:77:2734:-246.257,-23.1793,0	0/1:85:35,50:35:1260:50:1796:-136.335,0,-88.0311	0/1:106:52,54:52:1846:54:1931:-142.157,0,-134.461	1/1:16:0,16:0:0:16:564:-51.0895,-4.81648,0	1/1:73:0,73:0:0:73:2624:-236.402,-21.9752,0	1/1:27:0,27:0:0:27:960:-86.7092,-8.12781,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:72:38,34:38:1364:34:1224:-88.792,0,-99.4525	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:96:43,53:43:1527:53:1900:-142.379,0,-108.606	1/1:7:0,7:0:0:7:248:-22.6633,-2.10721,0	1/1:69:0,69:0:0:69:2456:-220.864,-20.7711,0	0/1:122:62,60:62:2190:60:2148:-156.849,0,-160.456	1/1:43:0,43:0:0:43:1529:-137.899,-12.9443,0	0/1:47:20,27:20:720:27:972:-73.627,0,-50.9502	0/1:77:43,34:43:1540:34:1213:-86.2959,0,-115.66	0/1:34:22,12:22:788:12:432:-28.9862,0,-60.9126	1/1:24:1,23:1:36:23:828:-71.2449,-3.62645,0	0/1:44:25,19:25:881:19:684:-48.645,0,-66.3592	0/1:62:25,37:25:896:37:1315:-99.981,0,-62.2573	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:70:0,70:0:0:70:2508:-225.434,-21.0721,0	0/1:42:19,23:19:684:23:828:-62.1923,0,-49.2471	0/1:94:46,48:46:1652:48:1702:-124.934,0,-120.626	1/1:126:0,126:0:0:126:4506:-405.707,-37.9298,0	1/1:96:1,95:1:36:95:3372:-299.862,-25.3006,0	0/1:87:39,48:39:1379:48:1713:-128.238,0,-98.2184	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	1/1:89:1,88:1:36:88:3119:-277.338,-23.1944,0	0/1:67:21,46:21:739:46:1626:-126.458,0,-46.4727	1/1:126:0,126:0:0:126:4482:-403.268,-37.9298,0	1/1:98:2,96:2:72:96:3448:-303.688,-22.6661,0	0/1:37:18,19:18:648:19:672:-49.6682,0,-47.4974	1/1:54:0,54:0:0:54:1932:-174.155,-16.2556,0	1/1:121:1,120:1:36:120:4300:-383.576,-32.8264,0	0/1:30:15,15:15:527:15:540:-39.9056,0,-38.7293	1/1:62:0,62:0:0:62:2203:-198.513,-18.6639,0	0/1:38:23,15:23:819:15:540:-37.4974,0,-62.5924	0/1:25:8,17:8:288:17:608:-47.47,0,-18.7352	0/1:68:22,46:22:779:46:1624:-125.975,0,-49.9384	0/1:45:31,14:31:1108:14:495:-31.3367,0,-86.4594	1/1:60:0,60:0:0:60:2154:-194.121,-18.0618,0	1/1:61:0,61:0:0:61:2157:-194.395,-18.3628,0
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chr12	22041813	.	T	C	60618.8	PASS	AB=0.522249;ABP=26.4901;AC=44;AF=0.234043;AN=188;AO=2864;CIGAR=1X;DP=10756;DPB=10756;DPRA=1.48031;EPP=3.52284;EPPR=62.2637;GTI=2;LEN=1;MEANALT=1.03846;MQM=38.9794;MQMR=41.3698;NS=94;NUMALT=1;ODDS=0.486211;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102172;QR=282606;RO=7890;RPL=1419;RPP=3.52284;RPPR=61.754;RPR=1445;RUN=1;SAF=0;SAP=6222.11;SAR=2864;SRF=1;SRP=17127.2;SRR=7889;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:15:15,0:15:532:0:0:0,-4.51545,-45.8502	0/1:159:67,92:67:2391:92:3279:-221.529,0,-153.946	0/1:132:69,62:69:2484:62:2212:-141.553,0,-171.237	0/0:164:163,1:163:5843:1:36:0,-45.9144,-509.94	0/1:37:22,15:22:792:15:540:-34.5644,0,-57.795	0/1:47:15,32:15:536:32:1138:-78.6069,0,-30.3216	0/0:85:83,2:83:2976:2:72:0,-19.0534,-254.509	0/1:169:81,88:81:2892:88:3147:-208.144,0,-193.078	0/1:104:42,62:42:1500:62:2207:-149.293,0,-96.6034	0/0:78:78,0:78:2800:0:0:0,-23.4803,-246.216	0/0:229:229,0:229:8201:0:0:0,-68.9359,-713.23	0/1:92:48,44:48:1724:44:1576:-102.106,0,-115.967	0/0:110:110,0:110:3930:0:0:0,-33.1133,-333.295	0/0:509:508,1:508:18169:1:36:0,-149.837,-1566.85	0/0:75:75,0:75:2688:0:0:0,-22.5772,-233.377	0/1:110:51,59:51:1836:59:2094:-142.241,0,-125.191	0/0:152:152,0:152:5436:0:0:0,-45.7566,-459.096	0/0:73:73,0:73:2616:0:0:0,-21.9752,-217.144	0/0:69:69,0:69:2476:0:0:0,-20.7711,-210.953	0/1:247:95,152:95:3412:152:5427:-392.524,0,-224.977	0/1:128:71,57:71:2540:57:2027:-130.38,0,-182.578	0/0:81:81,0:81:2900:0:0:0,-24.3834,-256.576	0/0:20:20,0:20:720:0:0:0,-6.0206,-63.7303	0/0:41:41,0:41:1468:0:0:0,-12.3422,-126.08	0/0:38:38,0:38:1364:0:0:0,-11.4391,-117.125	0/1:307:161,146:161:5780:146:5248:-365.532,0,-419.6	0/0:204:204,0:204:7308:0:0:0,-61.4101,-632.709	0/0:32:32,0:32:1152:0:0:0,-9.63296,-100.203	0/1:354:176,178:176:6305:178:6348:-449.096,0,-449.799	0/1:128:48,80:48:1724:80:2861:-203.566,0,-110.561	0/1:61:30,31:30:1076:31:1116:-76.9962,0,-76.0475	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.4807	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.0197	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.10555	0/1:7:6,1:6:216:1:36:-1.19181,0,-15.595	0/1:5:3,2:3:108:2:72:-4.763,0,-7.79349	0/1:194:92,102:92:3300:102:3641:-260.48,0,-233.817	0/1:185:93,92:93:3324:92:3288:-220.266,0,-234.043	0/0:142:142,0:142:5076:0:0:0,-42.7463,-427.417	0/1:6:4,2:4:144:2:64:-3.90464,0,-11.0724	0/0:161:161,0:161:5776:0:0:0,-48.4658,-495.29	0/0:79:79,0:79:2836:0:0:0,-23.7814,-246.425	0/0:81:81,0:81:2896:0:0:0,-24.3834,-249.06	0/0:105:105,0:105:3760:0:0:0,-31.6081,-327.467	0/1:65:28,37:28:1008:37:1328:-93.9402,0,-69.2991	0/1:80:32,48:32:1148:48:1703:-124.563,0,-78.1109	0/0:85:85,0:85:3044:0:0:0,-25.5875,-253.275	0/0:180:180,0:180:6448:0:0:0,-54.1854,-561.77	0/0:86:86,0:86:3079:0:0:0,-25.8886,-270.595	0/1:206:104,102:104:3704:102:3657:-254.191,0,-263.632	0/1:80:37,43:37:1316:43:1532:-108.312,0,-93.1593	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.582	0/0:184:184,0:184:6574:0:0:0,-55.3895,-553.844	0/0:49:49,0:49:1752:0:0:0,-14.7505,-155.341	0/1:13:6,7:6:216:7:248:-17.5075,0,-14.7184	0/1:131:60,71:60:2148:71:2536:-173.279,0,-147.405	0/0:20:20,0:20:707:0:0:0,-6.0206,-62.0551	0/1:14:12,2:12:432:2:72:-2.54643,0,-33.9487	0/0:22:22,0:22:792:0:0:0,-6.62266,-70.8229	0/0:87:87,0:87:3109:0:0:0,-26.1896,-268.436	0/1:211:93,118:93:3316:118:4185:-297.571,0,-227.542	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.1966	0/0:216:216,0:216:7716:0:0:0,-65.0225,-682.852	0/1:165:86,79:86:3092:79:2819:-192.808,0,-221.371	0/0:90:88,2:88:3160:2:68:0,-20.9727,-268.321	0/1:100:50,50:50:1800:50:1787:-124.47,0,-128.751	0/1:132:44,88:44:1564:88:3148:-232.165,0,-98.0095	0/1:99:29,70:29:1040:70:2491:-184.509,0,-60.1333	0/0:110:109,1:109:3908:1:36:0,-29.7257,-332.74	0/1:60:36,24:36:1292:24:864:-53.1807,0,-91.4725	0/1:150:80,70:80:2872:70:2490:-173.165,0,-207.925	0/0:30:30,0:30:1072:0:0:0,-9.0309,-94.6083	0/0:114:114,0:114:4080:0:0:0,-34.3174,-346.281	0/1:36:21,15:21:756:15:540:-33.0594,0,-53.2634	0/1:301:167,134:167:5952:134:4768:-314.207,0,-425.992	0/0:221:218,3:218:7844:3:101:0,-57.3924,-677.921	0/0:143:143,0:143:5128:0:0:0,-43.0473,-433.121	0/1:108:50,58:50:1800:58:2063:-136.942,0,-118.612	0/1:5:2,3:2:68:3:108:-7.73212,0,-4.66067	0/0:148:148,0:148:5300:0:0:0,-44.5524,-457.981	0/1:169:72,97:72:2576:97:3476:-233.974,0,-166.493	0/0:205:204,1:204:7320:1:36:0,-58.2567,-636.884	0/0:149:149,0:149:5334:0:0:0,-44.8535,-463.627	0/1:133:74,59:74:2656:59:2111:-141.356,0,-193.138	0/0:111:111,0:111:3971:0:0:0,-33.4143,-348.246	0/0:139:139,0:139:4992:0:0:0,-41.8432,-438.866	0/1:52:32,20:32:1148:20:720:-44.0588,0,-81.8708	0/0:114:112,1:112:4011:1:36:0,-30.7783,-334.09	0/1:109:50,59:50:1796:59:2096:-138.878,0,-119.616	0/1:204:100,104:100:3580:104:3697:-252.711,0,-246.931	0/1:280:139,141:139:4996:141:5003:-333.529,0,-347.988	0/1:86:30,56:30:1076:56:1988:-144.82,0,-67.6499	0/0:103:103,0:103:3680:0:0:0,-31.0061,-322.654	0/0:124:124,0:124:4434:0:0:0,-37.3277,-389.537
chr12	22111647	.	C	A	51034.2	PASS	AB=0.522957;ABP=28.8328;AC=48;AF=0.255319;AN=188;AO=2966;CIGAR=1X;DP=9938;DPB=9938;DPRA=1.57638;EPP=6417.57;EPPR=15053.6;GTI=6;LEN=1;MEANALT=1.09259;MQM=59.9865;MQMR=59.9937;NS=94;NUMALT=1;ODDS=0.536009;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=106303;QR=248785;RO=6967;RPL=3;RPP=6417.57;RPPR=15053.6;RPR=2963;RUN=1;SAF=2966;SAP=6443.6;SAR=0;SRF=6967;SRP=15131.7;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1171:0:0:0,-9.93399,-105.697	0/1:150:82,68:82:2931:68:2448:-175.42,0,-218.868	0/1:94:51,43:51:1823:43:1540:-110.596,0,-136.054	0/0:232:230,2:230:8224:2:72:0,-63.0022,-733.337	0/1:79:29,50:29:1044:50:1796:-138.141,0,-70.4934	0/1:77:32,45:32:1144:45:1597:-120.839,0,-80.0902	0/0:156:155,1:155:5525:1:36:0,-43.3624,-493.778	0/1:226:121,105:121:4313:105:3753:-269.936,0,-320.313	0/1:147:54,93:54:1932:93:3330:-255.665,0,-129.905	0/0:165:165,0:165:5886:0:0:0,-49.6699,-529.852	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:64:34,29:34:1216:29:1044:-74.9501,0,-90.4219	0/0:104:104,0:104:3699:0:0:0,-31.3071,-333.111	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.948	0/0:74:73,1:73:2620:1:36:0,-18.6779,-232.449	0/1:80:48,32:48:1719:32:1152:-79.9077,0,-130.912	0/0:56:56,0:56:1991:0:0:0,-16.8577,-179.464	0/0:91:91,0:91:3256:0:0:0,-27.3937,-293.261	0/0:58:58,0:58:2053:0:0:0,-17.4597,-185.04	0/1:162:72,90:72:2555:90:3236:-242.694,0,-181.434	0/1:227:106,121:106:3762:121:4340:-322.441,0,-270.447	0/0:79:79,0:79:2827:0:0:0,-23.7814,-254.668	0/0:95:95,0:95:3394:0:0:0,-28.5978,-305.674	0/0:71:66,5:66:2355:5:180:0,-4.82106,-195.656	0/0:89:89,0:89:3188:0:0:0,-26.7917,-287.144	0/1:434:215,219:215:7679:219:7845:-575.428,0,-560.497	0/0:254:254,0:254:9058:0:0:0,-76.4616,-815.196	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:256:105,151:105:3755:151:5399:-408.974,0,-261.086	0/1:188:94,94:94:3367:94:3384:-248.176,0,-246.652	0/1:190:96,94:96:3440:94:3359:-245.328,0,-252.617	0/1:13:3,10:3:108:10:345:-27.4674,0,-6.16178	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:12:8,4:8:288:4:138:-9.14745,0,-22.655	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:217:102,115:102:3655:115:4136:-307.098,0,-263.83	0/1:172:76,96:76:2706:96:3440:-258.028,0,-192.006	0/0:86:86,0:86:3075:0:0:0,-25.8886,-276.978	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:114:114,0:114:4067:0:0:0,-34.3174,-366.217	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:119:118,1:118:4190:1:36:0,-32.2243,-373.685	0/0:122:122,0:122:4367:0:0:0,-36.7257,-393.203	0/1:76:41,35:41:1460:35:1260:-90.8272,0,-108.818	0/1:173:70,101:70:2503:101:3614:-273.623,0,-173.686	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/0:80:80,0:80:2864:0:0:0,-24.0824,-257.997	0/0:107:107,0:107:3844:0:0:0,-32.2102,-346.155	0/1:190:91,99:91:3247:99:3560:-263.411,0,-235.256	0/1:163:71,92:71:2526:92:3262:-244.731,0,-178.523	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:108:108,0:108:3850:0:0:0,-32.5112,-346.696	0/0:55:55,0:55:1967:0:0:0,-16.5566,-177.304	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	0/1:116:47,68:47:1671:68:2444:-185.236,0,-115.698	0/0:39:39,0:39:1396:0:0:0,-11.7402,-125.939	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:18:18,0:18:636:0:0:0,-5.41854,-57.568	0/0:78:78,0:78:2761:0:0:0,-23.4803,-248.731	0/1:100:59,41:59:2116:41:1476:-103.033,0,-159.979	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/0:134:134,0:134:4754:0:0:0,-40.338,-428.021	0/1:299:149,149:149:5340:149:5360:-392.462,0,-390.666	0/1:97:88,9:88:3126:9:324:-0.305946,0,-252.367	0/1:68:38,30:38:1346:30:1072:-76.3224,0,-100.969	0/1:215:98,117:98:3490:117:4191:-312.649,0,-249.59	0/1:119:41,78:41:1472:78:2804:-216.777,0,-96.9536	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:112:60,52:60:2151:52:1857:-133.692,0,-160.141	0/1:78:46,32:46:1656:32:1152:-80.5098,0,-125.848	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/0:143:143,0:143:5103:0:0:0,-43.0473,-459.414	0/1:101:54,47:54:1936:47:1680:-121.083,0,-144.112	0/1:259:107,152:107:3808:152:5434:-411.222,0,-264.953	0/0:125:124,1:124:4419:1:36:0,-34.0305,-394.282	0/0:86:86,0:86:3058:0:0:0,-25.8886,-275.449	0/1:113:62,51:62:2211:51:1813:-129.433,0,-165.238	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/0:73:72,1:72:2580:1:36:0,-18.3769,-228.851	0/1:124:57,67:57:2030:67:2408:-179.648,0,-145.643	0/0:267:266,1:266:9503:1:36:0,-76.7767,-851.629	0/0:86:86,0:86:3096:0:0:0,-25.8886,-278.866	0/1:73:41,32:41:1476:32:1152:-82.015,0,-111.161	0/0:102:102,0:102:3643:0:0:0,-30.7051,-328.075	0/0:137:137,0:137:4895:0:0:0,-41.2411,-440.702	0/1:42:17,25:17:612:25:900:-68.6778,0,-42.7702	0/0:65:65,0:65:2319:0:0:0,-19.5669,-208.97	0/1:70:29,41:29:1031:41:1476:-112.064,0,-72.0305	0/1:57:22,35:22:792:35:1260:-96.5468,0,-54.447	0/1:79:33,46:33:1157:46:1656:-125.547,0,-80.6529	0/1:97:26,71:26:928:71:2534:-199.111,0,-54.6383	0/0:98:98,0:98:3511:0:0:0,-29.5009,-316.199	0/0:128:128,0:128:4584:0:0:0,-38.5318,-412.725
chr12	22111690	.	CTTTG	TTTTA,CTTTA	224460	PASS	AB=0.458524,0.53944;ABP=91.0925,82.6586;AC=142,46;AF=0.755319,0.244681;AN=188;AO=7506,3187;CIGAR=1X3M1X,4M1X;DP=10724;DPB=10898.8;DPRA=0,1.38459;EPP=16293.4,6923.49;EPPR=7.35324;GTI=5;LEN=5,1;MEANALT=1.82979,2.30769;MQM=59.9201,60;MQMR=60;NS=94;NUMALT=2;ODDS=2.63953;PAIRED=0,0;PAIREDR=0;PAO=872.5,0.5;PQA=31185,18;PQR=0;PRO=0;QA=263695,113631;QR=67;RO=2;RPL=3,0;RPP=16276,6923.49;RPPR=7.35324;RPR=7503,3187;RUN=1,1;SAF=2,0;SAP=16284.7,6923.49;SAR=7504,3187;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39,0:0:0:39,0:1358,0:-122.509,-11.7402,0,-122.509,-11.7402,-122.509	1/2:135:0,54,81:0:0:54,81:1897,2885:-389.903,-235.503,-219.247,-154.753,0,-130.37	1/2:149:0,68,81:0:0:68,81:2410,2899:-433.093,-236.762,-216.292,-196.688,0,-172.304	1/1:298:0,297,0:0:0:297,0:10475,0:-942.46,-89.4059,0,-942.46,-89.4059,-942.46	1/2:83:0,32,51:0:0:32,51:1110,1816:-238.593,-148.369,-138.736,-90.5743,0,-75.2218	1/2:75:0,35,40:0:0:35,40:1231,1403:-214.711,-114.522,-103.986,-100.54,0,-88.4987	1/1:189:0,189,0:0:0:189,0:6598,0:-593.558,-56.8947,0,-593.558,-56.8947,-593.558	1/2:213:0,111,102:0:0:111,102:3886,3651:-613.483,-298.088,-264.674,-315.749,0,-285.044	1/2:108:0,55,53:0:0:55,53:1914,1891:-310.142,-154.514,-137.957,-155.98,0,-140.026	1/1:125:0,123,0:0:0:123,0:4353,0:-391.702,-37.0267,0,-391.702,-37.0267,-391.702	1/1:51:0,50,0:0:0:50,0:1773,0:-159.493,-15.0515,0,-159.493,-15.0515,-159.493	1/2:66:0,36,30:0:0:36,30:1268,1036:-187.708,-84.5152,-73.6782,-103.541,0,-94.5106	1/1:55:0,55,0:0:0:55,0:1945,0:-175.314,-16.5567,0,-175.314,-16.5567,-175.314	1/1:64:0,63,0:0:0:63,0:2204,0:-198.264,-18.9649,0,-198.264,-18.9649,-198.264	1/1:77:0,77,0:0:0:77,0:2716,0:-244.686,-23.1793,0,-244.686,-23.1793,-244.686	1/2:51:0,28,23:0:0:28,23:973,815:-145.848,-66.7471,-58.3182,-79.452,0,-72.5283	1/1:62:0,62,0:0:0:62,0:2157,0:-194.396,-18.6639,0,-194.396,-18.6639,-194.396	1/1:64:0,64,0:0:0:64,0:2243,0:-202.135,-19.2659,0,-202.135,-19.2659,-202.135	1/1:43:0,43,0:0:0:43,0:1517,0:-136.825,-12.9443,0,-136.825,-12.9443,-136.825	1/2:155:0,63,91:0:0:63,91:2227,3244:-445.802,-264.427,-245.462,-181.37,0,-153.976	1/2:179:0,81,97:0:0:81,97:2856,3446:-513.396,-280.853,-256.47,-232.595,0,-203.395	1/1:55:0,55,0:0:0:55,0:1929,0:-173.533,-16.5567,0,-173.533,-16.5567,-173.533	1/1:71:0,71,0:0:0:71,0:2484,0:-223.472,-21.3731,0,-223.472,-21.3731,-223.472	1/2:125:0,111,14:0:0:111,14:3882,500:-356.931,-41.1218,-7.70743,-316.165,0,-311.951	1/1:57:0,57,0:0:0:57,0:2000,0:-180.274,-17.1587,0,-180.274,-17.1587,-180.274	1/2:476:0,216,260:0:0:216,260:7580,9320:-1377.01,-760.139,-695.116,-616.87,0,-538.602	1/1:287:0,286,0:0:0:286,0:10023,0:-901.13,-86.0946,0,-901.13,-86.0946,-901.13	1/1:43:0,43,0:0:0:43,0:1527,0:-137.667,-12.9443,0,-137.667,-12.9443,-137.667	1/2:334:0,150,182:0:0:150,182:5289,6463:-957.26,-526.617,-481.462,-430.642,0,-375.855	1/2:160:0,74,86:0:0:74,86:2574,3056:-458.663,-249.38,-227.103,-209.634,0,-183.746	1/2:131:0,72,59:0:0:72,59:2506,2120:-376.645,-173.308,-151.634,-203.691,0,-185.93	1/2:7:0,3,4:0:0:3,4:96,140:-19.4622,-11.7405,-10.8374,-8.05447,0,-6.85035	1/1:9:0,9,0:0:0:9,0:321,0:-29.2333,-2.70927,0,-29.2333,-2.70927,-29.2333	1/1:7:0,7,0:0:0:7,0:242,0:-22.1166,-2.10721,0,-22.1166,-2.10721,-22.1166	1/2:19:0,5,14:0:0:5,14:174,504:-55.629,-41.4837,-39.9785,-14.4963,0,-10.2819	1/2:8:0,5,3:0:0:5,3:175,104:-23.0399,-8.79971,-7.29456,-14.588,0,-13.6849	1/2:170:0,80,90:0:0:80,90:2826,3215:-492.268,-262.122,-238.04,-230.145,0,-203.052	1/2:231:0,87,143:0:0:87,143:3044,5095:-662.988,-415.345,-389.155,-247.695,0,-204.647	1/1:76:0,76,0:0:0:76,0:2683,0:-241.716,-22.8783,0,-241.716,-22.8783,-241.716	1/2:3:0,1,2:0:0:1,2:32,72:-8.79971,-6.23466,-5.93363,-2.89828,0,-2.29622	1/1:206:0,204,1:0:0:204,1:7156,36:-643.752,-61.4101,0,-640.815,-58.4727,-640.514	1/1:32:0,32,0:0:0:32,0:1134,0:-102.369,-9.63296,0,-102.369,-9.63296,-102.369	1/1:104:0,103,1:0:0:103,1:3633,36:-326.688,-31.0061,0,-323.75,-27.7088,-323.449	1/1:70:0,70,0:0:0:70,0:2461,0:-221.746,-21.0721,0,-221.746,-21.0721,-221.746	1/2:59:0,28,31:0:0:28,31:974,1082:-167.549,-88.3553,-79.9264,-79.5418,0,-70.2099	1/2:95:0,52,43:0:0:52,43:1811,1532:-272.136,-124.872,-109.218,-147.263,0,-134.318	1/1:128:0,128,0:0:0:128,0:4528,0:-407.694,-38.5318,0,-407.694,-38.5318,-407.694	1/1:221:0,221,0:0:0:221,0:7746,0:-696.868,-66.5276,0,-696.868,-66.5276,-696.868	1/1:113:0,113,0:0:0:113,0:3965,0:-357.05,-34.0164,0,-357.05,-34.0164,-357.05	1/2:208:1,87,119:1:31:87,119:3038,4264:-592.096,-345.292,-321.591,-244.635,0,-211.3	1/2:272:0,133,138:0:0:133,138:4703,4944:-786.257,-403.211,-363.174,-383.046,0,-341.504	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:169:0,169,0:0:0:169,0:5909,0:-531.92,-50.8741,0,-531.92,-50.8741,-531.92	1/1:29:0,29,0:0:0:29,0:1029,0:-92.5672,-8.72987,0,-92.5672,-8.72987,-92.5672	1/2:16:0,9,7:0:0:9,7:319,252:-46.9068,-20.9217,-18.2125,-26.3425,0,-24.2352	1/2:221:0,107,113:0:0:107,113:3729,4035:-632.216,-328.962,-296.751,-303.248,0,-269.231	1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chr12	22211115	.	C	G	237423	PASS	AB=0.527347;ABP=39.4719;AC=145;AF=0.771277;AN=188;AO=8789;CIGAR=1X;DP=11468;DPB=11468;DPRA=0;EPP=84.6968;EPPR=45.7398;GTI=0;LEN=1;MEANALT=1.14894;MQM=59.2367;MQMR=59.9861;NS=94;NUMALT=1;ODDS=6.1105;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=313808;QR=95512;RO=2665;RPL=4682;RPP=84.6968;RPPR=45.7398;RPR=4107;RUN=1;SAF=0;SAP=19088.1;SAR=8789;SRF=0;SRP=5789.98;SRR=2665;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:65:1,64:1:36:64:2279:-201.441,-15.9687,0	0/1:69:26,43:26:936:43:1536:-117.723,0,-63.7884	0/1:159:75,83:75:2691:83:2956:-217.192,0,-194.511	1/1:319:1,318:1:36:318:11381:-1019.8,-92.4303,0	0/1:31:13,18:13:464:18:640:-48.5955,0,-32.7656	0/1:24:10,14:10:360:14:495:-37.5855,0,-25.5196	1/1:89:0,89:0:0:89:3155:-284.164,-26.7917,0	0/1:241:114,127:114:4083:127:4524:-333.793,0,-295.078	0/1:121:52,69:52:1872:69:2480:-186.393,0,-132.334	1/1:97:0,97:0:0:97:3454:-310.567,-29.1999,0	1/1:135:0,135:0:0:135:4807:-432.658,-40.6391,0	0/1:147:88,59:88:3168:59:2098:-144.806,0,-241.092	1/1:98:0,98:0:0:98:3491:-313.385,-29.5009,0	1/1:126:0,126:0:0:126:4489:-403.215,-37.9298,0	1/1:132:0,132:0:0:132:4732:-424.599,-39.736,0	0/1:102:44,58:44:1561:58:2069:-155.732,0,-110.075	1/1:63:0,63:0:0:63:2266:-204.076,-18.9649,0	1/1:40:0,40:0:0:40:1436:-129.529,-12.0412,0	1/1:40:0,40:0:0:40:1425:-127.903,-12.0412,0	0/1:235:110,124:110:3956:124:4440:-327.551,0,-285.466	0/1:163:65,98:65:2328:98:3528:-268.602,0,-160.712	1/1:112:0,112:0:0:112:3979:-358.242,-33.7154,0	1/1:160:2,158:2:72:158:5656:-501.15,-41.3281,0	1/1:131:7,124:7:252:124:4417:-374.181,-16.406,0	1/1:87:1,86:1:36:86:3057:-271.71,-22.5913,0	0/1:286:100,186:100:3576:186:6618:-508.302,0,-235.953	1/1:303:0,302:0:0:302:10762:-967.536,-90.9111,0	1/1:47:0,47:0:0:47:1684:-151.838,-14.1484,0	0/1:430:259,171:259:9262:171:6092:-418.746,0,-704.102	0/1:164:74,89:74:2656:89:3164:-235.387,0,-189.858	0/1:156:85,71:85:3011:71:2530:-180.91,0,-224.257	1/1:9:0,9:0:0:9:315:-28.677,-2.70927,0	1/1:40:0,39:0:0:39:1391:-125.06,-11.7402,0	1/1:14:0,14:0:0:14:504:-45.6817,-4.21442,0	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:8:6,2:6:212:2:72:-4.42848,0,-17.0166	0/1:306:177,129:177:6360:129:4615:-323.164,0,-480.371	0/1:175:97,78:97:3460:78:2783:-198.006,0,-258.925	1/1:76:0,76:0:0:76:2736:-246.407,-22.8783,0	1/1:8:0,8:0:0:8:284:-25.7431,-2.40824,0	1/1:140:0,140:0:0:140:5019:-450.293,-42.1442,0	1/1:49:0,49:0:0:49:1711:-154.251,-14.7505,0	1/1:174:0,173:0:0:173:6193:-555.884,-52.0782,0	1/1:105:0,105:0:0:105:3729:-335.792,-31.6082,0	0/1:87:30,56:30:1072:56:2007:-154.631,0,-70.5441	0/1:157:74,83:74:2656:83:2955:-218.914,0,-192.024	1/1:144:0,144:0:0:144:5120:-460.488,-43.3483,0	1/1:210:0,210:0:0:210:7477:-672.175,-63.2163,0	1/1:159:1,157:1:36:157:5597:-500.104,-44.3243,0	0/1:140:58,80:58:2069:80:2872:-216.782,0,-144.577	0/1:164:95,68:95:3416:68:2444:-170.29,0,-258.225	1/1:16:0,16:0:0:16:576:-52.1704,-4.81648,0	1/1:215:0,215:0:0:215:7696:-690.943,-64.7215,0	1/1:119:1,118:1:36:118:4214:-375.775,-32.2243,0	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:135:56,79:56:2001:79:2797:-211.278,0,-139.723	1/1:71:1,70:1:36:70:2504:-221.286,-17.7749,0	0/1:22:4,18:4:140:18:648:-52.0292,0,-6.32192	1/1:41:0,41:0:0:41:1464:-131.94,-12.3422,0	1/1:87:0,87:0:0:87:3123:-281.259,-26.1896,0	0/1:186:84,102:84:3016:102:3635:-271.102,0,-215.679	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:216:0,215:0:0:215:7660:-687.304,-64.7215,0	0/1:201:89,112:89:3200:112:3987:-298.244,0,-227.715	0/1:93:14,79:14:504:79:2825:-226.431,0,-17.7023	0/1:73:34,39:34:1216:39:1396:-103.87,0,-87.7714	0/1:212:105,107:105:3764:107:3835:-281.186,0,-275.141	1/1:168:2,166:2:72:166:5909:-524.864,-43.7363,0	1/1:81:0,81:0:0:81:2901:-261.283,-24.3834,0	0/1:50:17,33:17:608:33:1176:-91.0311,0,-39.9996	0/1:55:28,27:28:1008:27:968:-70.878,0,-74.4797	1/1:58:0,58:0:0:58:2076:-187.099,-17.4597,0	1/1:157:0,157:0:0:157:5608:-504.005,-47.2617,0	0/1:98:30,68:30:1072:68:2435:-189.206,0,-67.2915	0/1:190:86,104:86:3096:104:3728:-278.34,0,-221.671	1/1:213:0,213:0:0:213:7571:-681.268,-64.1194,0	1/1:126:0,126:0:0:126:4516:-406.081,-37.9298,0	0/1:115:42,72:42:1493:72:2572:-196.976,0,-99.9854	0/1:31:12,19:12:432:19:684:-52.5502,0,-29.8893	1/1:170:0,170:0:0:170:6093:-547.893,-51.1751,0	0/1:125:48,77:48:1720:77:2746:-208.66,0,-117.457	1/1:225:2,223:2:72:223:7975:-710.903,-60.895,0	1/1:55:0,55:0:0:55:1976:-178.108,-16.5567,0	0/1:123:62,61:62:2228:61:2168:-158.266,0,-163.757	1/1:83:1,82:1:36:82:2948:-261.703,-21.3872,0	1/1:182:1,181:1:36:181:6484:-579.9,-51.1892,0	0/1:37:12,25:12:432:25:881:-68.4419,0,-28.0831	1/1:102:0,102:0:0:102:3648:-328.41,-30.7051,0	0/1:108:59,49:59:2124:49:1728:-123.175,0,-158.917	0/1:81:35,46:35:1256:46:1651:-124.34,0,-88.9609	0/1:186:94,92:94:3369:92:3256:-237.248,0,-247.432	0/1:100:66,33:66:2368:33:1180:-76.344,0,-183.216	1/1:153:0,153:0:0:153:5454:-490.974,-46.0576,0	1/1:140:0,140:0:0:140:5040:-453.715,-42.1442,0
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chr12	22211136	.	T	C	44209.9	PASS	AB=0.475483;ABP=32.1845;AC=43;AF=0.228723;AN=188;AO=2679;CIGAR=1X;DP=11357;DPB=11357;DPRA=1.34934;EPP=5820.38;EPPR=18838.4;GTI=0;LEN=1;MEANALT=1.07407;MQM=59.9765;MQMR=59.2169;NS=94;NUMALT=1;ODDS=5.01579;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95876;QR=306496;RO=8674;RPL=2679;RPP=5820.38;RPPR=18838.4;RPR=0;RUN=1;SAF=0;SAP=5820.38;SAR=2679;SRF=0;SRP=18838.4;SRR=8674;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:64:64,0:64:2247:0:0:0,-19.2659,-202.031	0/1:70:44,26:44:1550:26:936:-63.4874,0,-118.694	0/1:157:81,75:81:2844:75:2666:-192.971,0,-208.197	0/0:326:325,1:325:11411:1:36:0,-94.5375,-1022.1	0/1:27:13,14:13:468:14:497:-36.937,0,-34.3272	0/1:23:12,11:12:432:11:392:-28.6964,0,-32.2135	0/0:91:91,0:91:3188:0:0:0,-27.3937,-287.128	0/1:239:123,116:123:4337:116:4149:-301.643,0,-317.525	0/1:117:65,52:65:2331:52:1868:-133.179,0,-173.907	0/0:98:98,0:98:3493:0:0:0,-29.5009,-314.309	0/0:136:136,0:136:4824:0:0:0,-40.9401,-434.181	0/1:150:62,88:62:2194:88:3160:-239.47,0,-152.535	0/0:95:95,0:95:3382:0:0:0,-28.5978,-304.292	0/0:123:123,0:123:4374:0:0:0,-37.0267,-393.158	0/0:136:135,1:135:4656:1:27:0,-38.2406,-415.772	0/1:97:55,42:55:1920:42:1504:-106.455,0,-143.838	0/0:63:63,0:63:2245:0:0:0,-18.9649,-202.198	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.176	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.769	0/1:235:124,111:124:4395:111:3961:-285.938,0,-323.497	0/1:163:96,67:96:3422:67:2385:-165.838,0,-259.073	0/0:104:104,0:104:3657:0:0:0,-31.3071,-329.3	0/0:151:149,2:149:5306:2:72:0,-38.6188,-470.033	0/0:130:123,7:123:4344:7:252:0,-16.1049,-367.359	0/0:87:86,1:86:2960:1:36:0,-22.5913,-262.141	0/1:287:185,102:185:6515:102:3649:-242.217,0,-499.365	0/0:300:300,0:300:10521:0:0:0,-90.309,-946.193	0/0:47:47,0:47:1662:0:0:0,-14.1484,-149.854	0/1:432:172,260:172:6011:260:9292:-706.199,0,-410.84	0/1:161:86,75:86:3069:75:2685:-193.427,0,-227.803	0/1:160:72,88:72:2576:88:3137:-234.304,0,-183.639	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1305	0/0:40:40,0:40:1421:0:0:0,-12.0412,-128.123	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.9685	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:305:126,179:126:4449:179:6421:-486.159,0,-308.68	0/1:174:80,94:80:2842:94:3365:-250.68,0,-202.919	0/0:79:79,0:79:2828:0:0:0,-23.7814,-254.049	0/0:8:8,0:8:288:0:0:0,-2.40824,-25.9461	0/0:138:138,0:138:4871:0:0:0,-41.5421,-437.057	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.548	0/0:160:160,0:160:5648:0:0:0,-48.1648,-507.759	0/0:106:106,0:106:3770:0:0:0,-31.9092,-339.252	0/1:87:57,30:57:2029:30:1076:-70.9632,0,-156.668	0/1:157:81,76:81:2855:76:2721:-197.87,0,-209.876	0/0:140:140,0:140:4964:0:0:0,-42.1442,-446.393	0/0:208:208,0:208:7340:0:0:0,-62.6142,-659.816	0/0:161:159,1:159:5663:1:36:0,-44.8514,-505.82	0/1:140:81,59:81:2912:59:2105:-147.573,0,-220.138	0/1:169:72,97:72:2531:97:3488:-263.256,0,-176.889	0/0:16:16,0:16:561:0:0:0,-4.81648,-50.8125	0/0:209:209,0:209:7301:0:0:0,-62.9153,-655.415	0/0:121:120,1:120:4274:1:36:0,-32.8264,-381.171	0/1:11:4,7:4:144:7:248:-19.3529,0,-10.0023	0/1:134:79,55:79:2787:55:1953:-135.706,0,-210.691	0/0:63:62,1:62:2209:1:36:0,-15.3666,-194.836	0/1:22:18,4:18:644:4:140:-6.32192,0,-51.6679	0/0:43:43,0:43:1518:0:0:0,-12.9443,-136.904	0/0:83:83,0:83:2928:0:0:0,-24.9855,-263.723	0/1:183:100,83:100:3585:83:2975:-212.893,0,-266.948	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:219:219,0:219:7765:0:0:0,-65.9256,-697.29	0/1:195:107,88:107:3750:88:3160:-225.923,0,-278.478	0/1:93:79,14:79:2791:14:500:-17.3404,0,-223.353	0/1:69:34,35:34:1224:35:1237:-90.8612,0,-89.514	0/1:212:107,105:107:3776:105:3757:-274.51,0,-275.88	0/0:169:166,3:166:5937:3:108:0,-40.7989,-523.619	0/0:79:79,0:79:2810:0:0:0,-23.7814,-253.096	0/1:48:31,17:31:1093:17:612:-40.9631,0,-84.1724	0/1:56:28,28:28:978:28:1004:-73.8182,0,-71.4683	0/0:58:58,0:58:2061:0:0:0,-17.4597,-185.75	0/0:154:154,0:154:5411:0:0:0,-46.3586,-485.999	0/1:96:67,29:67:2389:29:1038:-64.835,0,-185.12	0/1:189:101,87:101:3594:87:3105:-222.723,0,-266.527	0/0:215:215,0:215:7444:0:0:0,-64.7214,-669.84	0/0:98:98,0:98:3433:0:0:0,-29.5009,-308.705	0/1:116:72,44:72:2539:44:1580:-107.572,0,-193.753	0/1:32:19,13:19:669:13:468:-32.8267,0,-50.8928	0/0:165:165,0:165:5837:0:0:0,-49.6699,-524.755	0/1:126:78,48:78:2736:48:1724:-117.516,0,-207.781	0/0:220:217,3:217:7733:3:108:0,-56.1538,-685.883	0/0:55:55,0:55:1930:0:0:0,-16.5566,-173.968	0/1:124:63,61:63:2203:61:2196:-160.577,0,-161.152	0/0:82:82,0:82:2922:0:0:0,-24.6845,-262.962	0/0:180:179,1:179:6364:1:36:0,-50.5871,-569.101	0/1:37:26,11:26:936:11:396:-24.8446,0,-72.4559	0/0:100:100,0:100:3555:0:0:0,-30.103,-320.097	0/1:108:50,58:50:1709:58:2075:-154.509,0,-121.358	0/1:82:47,35:47:1688:35:1252:-88.2991,0,-127.426	0/1:181:87,94:87:3120:94:3380:-249.928,0,-226.517	0/1:100:34,65:34:1205:65:2332:-179.978,0,-78.5853	0/0:155:155,0:155:5425:0:0:0,-46.6596,-488.349	0/0:139:139,0:139:4920:0:0:0,-41.8432,-442.893
chr12	22219874	.	C	T	17010.7	PASS	AB=0.418707;ABP=160.119;AC=44;AF=0.236559;AN=186;AO=1157;CIGAR=1X;DP=6258;DPB=6258;DPRA=1.00307;EPP=2515.4;EPPR=11040.6;GTI=4;LEN=1;MEANALT=1.04082;MQM=59.9153;MQMR=59.9722;NS=93;NUMALT=1;ODDS=0.25055;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40621;QR=182468;RO=5099;RPL=1157;RPP=2515.4;RPPR=11058;RPR=0;RUN=1;SAF=0;SAP=2515.4;SAR=1157;SRF=2;SRP=11058;SRR=5097;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:79:79,0:79:2844:0:0:0,-23.7814,-256.169	0/1:51:30,21:30:1067:21:741:-51.6409,0,-80.959	0/1:117:69,48:69:2438:48:1697:-117.794,0,-184.452	0/0:186:186,0:186:6642:0:0:0,-55.9916,-597.857	0/1:45:25,20:25:900:20:704:-50.1382,0,-67.7747	0/1:39:25,14:25:892:14:500:-33.596,0,-68.8595	0/0:83:83,0:83:2984:0:0:0,-24.9855,-268.791	0/1:83:52,31:52:1851:31:1093:-73.6922,0,-141.848	0/1:58:36,22:36:1292:22:781:-53.1517,0,-99.124	0/0:91:91,0:91:3245:0:0:0,-27.3937,-292.27	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/1:54:31,23:31:1108:23:820:-57.8669,0,-83.7754	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.463	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:33:16,17:16:572:17:604:-44.7566,0,-41.8794	0/0:9:9,0:9:315:0:0:0,-2.70927,-28.6872	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:74:51,23:51:1828:23:824:-52.2071,0,-142.525	0/1:71:39,32:39:1400:32:1125:-80.1829,0,-104.926	0/0:115:115,0:115:4119:0:0:0,-34.6184,-370.894	0/0:106:105,1:105:3749:1:36:0,-28.3109,-334.011	0/0:84:80,4:80:2872:4:144:0,-11.9729,-245.403	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/1:225:140,85:140:5012:85:2950:-197.953,0,-383.493	0/0:168:168,0:168:6016:0:0:0,-50.573,-541.545	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:176:104,71:104:3736:71:2452:-168.049,0,-283.558	0/1:43:34,9:34:1220:9:320:-16.1981,0,-97.1625	0/1:57:37,20:37:1320:20:699:-46.0726,0,-101.943	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:4:2,2:2:72:2:68:-5.25359,0,-5.6326	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:97:47,50:47:1680:50:1784:-131.619,0,-122.287	0/1:108:60,48:60:2156:48:1671:-118.16,0,-161.796	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	.:.:.:.:.:.:.:.	0/0:143:143,0:143:5132:0:0:0,-43.0473,-462.019	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:143:143,0:143:5119:0:0:0,-43.0473,-460.849	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:32:18,14:18:648:14:492:-34.9775,0,-49.0189	0/1:113:66,47:66:2353:47:1635:-113.417,0,-178.011	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.935	0/0:88:87,1:87:3124:1:36:0,-22.8924,-277.787	0/0:93:93,0:93:3329:0:0:0,-27.9958,-299.826	0/1:74:44,30:44:1561:30:1057:-73.1627,0,-118.503	0/1:122:79,43:79:2817:43:1532:-101.447,0,-217.042	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:189:189,0:189:6776:0:0:0,-56.8947,-609.911	0/0:76:76,0:76:2713:0:0:0,-22.8783,-244.412	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:97:42,55:42:1496:55:1895:-141.623,0,-105.735	0/0:62:62,0:62:2208:0:0:0,-18.6639,-198.794	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:80:79,1:79:2819:1:36:0,-20.4841,-250.351	0/1:74:46,28:46:1656:28:1008:-68.7601,0,-127.052	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:177:177,0:177:6290:0:0:0,-53.2823,-566.193	0/1:106:60,46:60:2125:46:1550:-107.869,0,-159.608	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:68:37,31:37:1328:31:1081:-77.1266,0,-99.3522	0/1:158:104,54:104:3716:54:1864:-120.433,0,-287.079	0/0:141:141,0:141:5051:0:0:0,-42.4452,-454.734	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/1:41:23,18:23:828:18:640:-45.5871,0,-62.5019	0/1:38:20,18:20:712:18:638:-46.3093,0,-52.9675	0/0:19:19,0:19:661:0:0:0,-5.71957,-59.8116	0/0:81:81,0:81:2899:0:0:0,-24.3834,-261.145	0/1:32:18,14:18:648:14:492:-34.9794,0,-49.0189	0/1:56:31,25:31:1108:25:873:-62.0277,0,-83.144	0/0:156:156,0:156:5604:0:0:0,-46.9607,-504.48	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/1:86:39,47:39:1404:47:1668:-124.519,0,-100.771	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:87:86,1:86:3088:1:36:0,-22.5913,-274.549	0/1:59:36,23:36:1292:23:824:-56.7225,0,-98.823	0/0:204:204,0:204:7290:0:0:0,-61.4101,-656.149	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:40:22,18:22:788:18:644:-46.2494,0,-59.2036	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:41:22,19:22:792:19:651:-46.5658,0,-59.2634	0/1:15:9,6:9:320:6:216:-15.2751,0,-24.6269	0/1:60:33,27:33:1184:27:964:-69.015,0,-88.8065	0/1:39:11,28:11:396:28:996:-78.2141,0,-24.2426	0/0:118:116,1:116:4131:1:36:0,-31.9821,-368.375	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.719
chr12	22364778	.	G	A	15371.4	PASS	AB=0.496088;ABP=3.26517;AC=46;AF=0.244681;AN=188;AO=958;CIGAR=1X;DP=3972;DPB=3972;DPRA=1.07832;EPP=2065.95;EPPR=6502.3;GTI=2;LEN=1;MEANALT=1;MQM=50.7557;MQMR=54.1195;NS=94;NUMALT=1;ODDS=1.40484;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33897;QR=106120;RO=3013;RPL=2;RPP=2065.95;RPPR=6502.3;RPR=956;RUN=1;SAF=0;SAP=2083.28;SAR=958;SRF=0;SRP=6545.66;SRR=3013;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83179	0/1:56:27,29:27:932:29:1036:-75.9395,0,-66.2249	0/1:30:16,14:16:572:14:495:-35.5951,0,-42.6208	0/0:48:48,0:48:1712:0:0:0,-14.4494,-154.162	0/1:14:7,7:7:252:7:252:-18.7391,0,-18.7933	0/1:8:4,4:4:144:4:144:-10.8739,0,-10.8974	0/0:58:57,1:57:2019:1:36:0,-13.8733,-177.14	0/1:41:19,22:19:680:22:776:-55.7404,0,-49.1399	0/1:24:6,18:6:207:18:648:-51.2857,0,-11.7252	0/0:75:75,0:75:2676:0:0:0,-22.5772,-239.569	0/0:65:65,0:65:2248:0:0:0,-19.5669,-200.718	0/1:49:26,23:26:884:23:816:-57.6177,0,-64.8709	0/0:47:47,0:47:1631:0:0:0,-14.1484,-146.632	0/0:72:71,0:71:2512:0:0:0,-21.3731,-224.863	0/0:46:46,0:46:1618:0:0:0,-13.8474,-145.492	0/1:33:13,20:13:446:20:707:-53.5464,0,-30.5046	0/0:71:71,0:71:2506:0:0:0,-21.3731,-224.775	0/0:32:32,0:32:1118:0:0:0,-9.63296,-100.847	0/0:36:36,0:36:1258:0:0:0,-10.8371,-113.299	0/1:36:27,9:27:960:9:324:-18.5721,0,-75.7594	0/1:40:24,16:24:843:16:560:-38.5421,0,-64.073	0/0:33:33,0:33:1160:0:0:0,-9.93399,-104.515	0/0:67:67,0:67:2361:0:0:0,-20.169,-212.039	0/1:23:19,4:19:680:4:129:-4.9709,0,-54.5465	0/1:16:11,5:11:396:5:176:-10.6844,0,-31.1292	0/1:129:67,62:67:2383:62:2220:-159.777,0,-174.282	0/0:89:89,0:89:3150:0:0:0,-26.7917,-283.427	0/0:13:13,0:13:451:0:0:0,-3.91339,-40.8874	0/1:72:36,36:36:1250:36:1267:-92.1161,0,-90.2779	0/1:77:41,36:41:1460:36:1265:-90.6037,0,-108.165	0/1:37:18,19:18:620:19:665:-48.8142,0,-44.9101	0/1:7:5,2:5:180:2:72:-4.70711,0,-14.2705	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6425	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59568	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59656	0/1:4:1,3:1:36:3:108:-8.84572,0,-2.39156	0/1:151:79,72:79:2816:72:2508:-179.51,0,-207.249	0/1:59:30,29:30:1080:29:1036:-75.5232,0,-78.4712	0/0:54:54,0:54:1882:0:0:0,-16.2556,-168.959	1/1:3:0,3:0:0:3:108:-10.0422,-0.90309,0	0/0:54:54,0:54:1892:0:0:0,-16.2556,-169.356	0/0:29:29,0:29:1014:0:0:0,-8.72987,-91.4876	0/0:13:13,0:13:445:0:0:0,-3.91339,-40.1875	0/0:44:44,0:44:1567:0:0:0,-13.2453,-141.13	0/1:32:15,17:15:525:17:599:-42.9706,0,-37.8794	0/1:22:15,7:15:536:7:252:-16.3225,0,-41.8464	0/0:25:25,0:25:864:0:0:0,-7.52575,-78.0072	0/0:42:42,0:42:1447:0:0:0,-12.6433,-130.185	0/0:32:32,0:32:1136:0:0:0,-9.63296,-102.397	0/1:50:26,24:26:918:24:856:-61.5248,0,-67.7156	0/1:55:32,23:32:1126:23:824:-57.5517,0,-84.9109	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.82703	0/0:33:33,0:33:1139:0:0:0,-9.93399,-102.6	0/0:27:27,0:27:964:0:0:0,-8.12781,-86.68	0/1:10:4,6:4:144:6:216:-16.7305,0,-10.2937	0/1:41:23,18:23:812:18:644:-45.7732,0,-60.9368	0/0:13:13,0:13:468:0:0:0,-3.91339,-41.9745	0/1:5:3,2:3:93:2:72:-5.03282,0,-4.92513	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7528	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.248	0/1:102:39,63:39:1392:63:2212:-167.961,0,-94.5221	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.3442	0/0:120:120,0:120:4255:0:0:0,-36.1236,-382.406	0/1:37:29,8:29:1016:8:280:-14.328,0,-79.5369	0/0:53:52,1:52:1837:1:36:0,-12.3681,-161.855	0/1:11:7,4:7:252:4:144:-9.95866,0,-19.6723	0/1:91:51,40:51:1819:40:1428:-100.975,0,-136.186	0/0:72:70,2:70:2462:2:72:0,-14.8598,-213.475	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.1667	0/1:22:10,12:10:360:12:432:-32.4375,0,-26.0996	0/1:96:46,50:46:1601:50:1775:-130.393,0,-115.215	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4538	0/0:44:44,0:44:1548:0:0:0,-13.2453,-138.93	0/1:10:4,6:4:144:6:216:-15.71,0,-10.2961	0/1:32:21,11:21:712:11:383:-24.9214,0,-54.7084	0/0:50:50,0:50:1777:0:0:0,-15.0515,-159.994	0/0:23:23,0:23:819:0:0:0,-6.92369,-73.982	0/1:31:18,13:18:644:13:468:-33.0292,0,-48.9139	0/1:10:9,1:9:309:1:36:-0.578929,0,-25.0775	0/0:38:38,0:38:1341:0:0:0,-11.4391,-120.859	0/1:36:18,18:18:644:18:640:-46.9561,0,-47.4142	0/0:50:50,0:50:1761:0:0:0,-15.0515,-158.547	0/0:84:84,0:84:2903:0:0:0,-25.2865,-259.868	0/1:46:20,26:20:707:26:918:-68.7991,0,-50.0275	0/0:39:39,0:39:1364:0:0:0,-11.7402,-122.707	0/0:105:105,0:105:3699:0:0:0,-31.6081,-330.396	0/1:37:13,24:13:456:24:830:-63.0237,0,-30.1394	0/0:57:57,0:57:1997:0:0:0,-17.1587,-179.866	0/1:48:26,22:26:924:22:788:-56.3617,0,-68.9742	0/1:38:9,29:9:320:29:1019:-80.332,0,-17.4897	0/1:96:39,57:39:1338:57:2027:-153.232,0,-91.6914	0/1:53:13,40:13:453:40:1382:-108.354,0,-25.0893	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.217	0/0:66:66,0:66:2310:0:0:0,-19.868,-207.158
chr12	22392587	.	C	A	29652.1	PASS	AB=0.517355;ABP=11.7534;AC=45;AF=0.239362;AN=188;AO=1758;CIGAR=1X;DP=6827;DPB=6827;DPRA=1.33607;EPP=3820.46;EPPR=11003.7;GTI=2;LEN=1;MEANALT=1.05556;MQM=59.9687;MQMR=59.9957;NS=94;NUMALT=1;ODDS=0.550201;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62848;QR=177865;RO=5066;RPL=1758;RPP=3820.46;RPPR=10995;RPR=0;RUN=1;SAF=1758;SAP=3820.46;SAR=0;SRF=5065;SRP=10995;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1533:0:0:0,-13.5463,-138.253	0/1:61:18,43:18:635:43:1544:-120.89,0,-39.1141	0/1:68:39,29:39:1343:29:1044:-73.8048,0,-100.692	0/0:148:148,0:148:5214:0:0:0,-44.5524,-469.405	0/1:45:21,24:21:743:24:864:-64.5362,0,-53.647	0/1:39:11,28:11:396:28:996:-78.2147,0,-24.2426	0/0:56:56,0:56:1992:0:0:0,-16.8577,-179.554	0/1:99:44,55:44:1548:55:1960:-146.865,0,-109.807	0/1:89:46,43:46:1590:43:1506:-109.038,0,-116.594	0/0:94:94,0:94:3293:0:0:0,-28.2968,-296.588	0/0:43:43,0:43:1510:0:0:0,-12.9443,-136.192	0/1:119:48,71:48:1684:71:2537:-192.758,0,-116.021	0/0:91:91,0:91:3125:0:0:0,-27.3937,-281.474	0/0:45:45,0:45:1567:0:0:0,-13.5463,-141.317	0/0:105:105,0:105:3686:0:0:0,-31.6081,-331.943	0/1:58:23,35:23:800:35:1251:-95.4345,0,-54.856	0/0:34:34,0:34:1182:0:0:0,-10.235,-106.683	0/0:45:45,0:45:1572:0:0:0,-13.5463,-141.768	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/1:72:34,38:34:1216:38:1364:-101.387,0,-88.0724	0/1:123:65,58:65:2263:58:2088:-151.163,0,-166.899	0/0:68:68,0:68:2378:0:0:0,-20.47,-214.276	0/0:88:86,2:86:3021:2:72:0,-19.6539,-265.283	0/0:45:43,2:43:1514:2:72:0,-6.70963,-129.715	0/1:71:52,19:52:1827:19:676:-39.7949,0,-143.334	0/1:177:85,91:85:3000:91:3240:-238.479,0,-216.891	0/0:198:198,0:198:6938:0:0:0,-59.6039,-624.495	0/0:40:40,0:40:1393:0:0:0,-12.0412,-125.665	0/1:172:85,87:85:3010:87:3116:-228.889,0,-219.355	0/1:74:38,36:38:1356:36:1263:-91.6923,0,-100.064	0/1:56:28,28:28:992:28:1000:-73.4577,0,-72.7367	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/0:2:2,0:2:57:0:0:0,-0.60206,-5.41331	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:219:107,111:107:3781:111:3969:-291.415,0,-274.504	0/1:99:43,56:43:1514:56:2016:-151.911,0,-106.75	0/0:41:41,0:41:1429:0:0:0,-12.3422,-128.901	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:94:94,0:94:3291:0:0:0,-28.2968,-296.409	0/0:33:33,0:33:1175:0:0:0,-9.93399,-106.057	0/0:123:122,1:122:4270:1:36:0,-33.4284,-380.883	0/0:67:66,1:66:2274:1:21:0,-18.0691,-202.819	0/1:71:33,38:33:1176:38:1351:-100.516,0,-84.7746	0/1:90:50,40:50:1772:40:1430:-101.905,0,-132.67	0/0:82:82,0:82:2909:0:0:0,-24.6845,-262.045	0/0:143:143,0:143:5024:0:0:0,-43.0473,-452.31	0/0:53:53,0:53:1867:0:0:0,-15.9546,-168.306	0/1:79:36,43:36:1277:43:1544:-115.472,0,-91.4497	0/1:118:65,53:65:2296:53:1893:-135.126,0,-171.378	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:80:80,0:80:2809:0:0:0,-24.0824,-253.049	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:88:30,58:30:1027:58:2079:-160.89,0,-66.2413	0/0:41:41,0:41:1459:0:0:0,-12.3422,-131.605	0/1:18:15,3:15:540:3:108:-4.65663,0,-43.518	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:88:34,54:34:1160:54:1940:-148.386,0,-78.2071	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:149:148,1:148:5217:1:36:0,-41.2552,-466.07	0/1:107:56,51:56:1988:51:1813:-131.24,0,-146.984	0/0:70:67,3:67:2383:3:104:0,-11.3693,-205.025	0/1:52:27,25:27:955:25:892:-64.9461,0,-70.6113	0/1:123:67,56:67:2389:56:2012:-144.326,0,-178.239	0/0:95:94,1:94:3320:1:36:0,-24.9996,-295.421	0/0:28:28,0:28:970:0:0:0,-8.42884,-87.6077	0/1:40:15,25:15:528:25:900:-69.2798,0,-35.8102	0/1:42:20,22:20:696:22:788:-58.6015,0,-50.3164	0/0:15:15,0:15:512:0:0:0,-4.51545,-46.4017	0/0:73:73,0:73:2536:0:0:0,-21.9752,-228.49	0/1:91:56,34:56:1978:34:1224:-83.0145,0,-150.841	0/1:95:45,50:45:1560:50:1796:-133.324,0,-112.087	0/0:101:101,0:101:3547:0:0:0,-30.404,-319.441	0/0:65:65,0:65:2287:0:0:0,-19.5669,-206.09	0/1:113:48,65:48:1691:65:2320:-174.955,0,-118.459	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/0:61:61,0:61:2146:0:0:0,-18.3628,-193.404	0/1:124:63,61:63:2228:61:2188:-159.858,0,-163.455	0/0:176:173,3:173:6118:3:108:0,-42.9061,-540.649	0/0:47:46,1:46:1640:1:36:0,-10.5501,-144.29	0/1:85:42,43:42:1461:43:1536:-112.946,0,-106.192	0/0:69:69,0:69:2401:0:0:0,-20.7711,-216.345	0/0:160:160,0:160:5561:0:0:0,-48.1648,-500.62	0/1:32:14,18:14:458:18:648:-49.0189,0,-31.8991	0/0:72:72,0:72:2497:0:0:0,-21.6742,-224.98	0/1:53:31,22:31:1080:22:788:-55.2902,0,-81.5512	0/1:30:16,14:16:544:14:504:-36.6672,0,-40.2488	0/1:53:23,30:23:820:30:1067:-80.3866,0,-58.1679	0/1:88:29,59:29:1013:59:2100:-162.779,0,-64.9887	0/0:70:70,0:70:2467:0:0:0,-21.0721,-222.282	0/0:177:176,1:176:6177:1:36:0,-49.684,-552.433
chr12	22406885	.	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chr12	22425799	.	GTGTCATT	GTGTTATT,GTGTTATC	97815.1	PASS	AB=0.525257,0.46913;ABP=14.8569,20.7071;AC=141,45;AF=0.758065,0.241935;AN=186;AO=3492,1010;CIGAR=4M1X3M,4M1X2M1X;DP=4539;DPB=4539.12;DPRA=12.3234,1.17675;EPP=7525.11,2178.86;EPPR=0;GTI=3;LEN=1,8;MEANALT=1.81522,2.23404;MQM=59.9201,59.5871;MQMR=0;NS=93;NUMALT=2;ODDS=0.0470594;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=125207,35818;QR=0;RO=0;RPL=3485,1008;RPP=7525.11,2178.86;RPPR=0;RPR=7,2;RUN=1,1;SAF=0,0;SAP=7585.79,2196.2;SAR=3492,1010;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,23,0:0:0:23,0:828,0:-74.4843,-6.92369,0,-74.4843,-6.92369,-74.4843	1/2:35:0,13,22:0:0:13,22:468,782:-102.254,-64.0654,-60.152,-38.5463,0,-31.9236	1/2:62:0,36,26:0:0:36,26:1292,926:-181.194,-75.8047,-64.9676,-105.747,0,-97.9199	1/1:155:0,155,0:0:0:155,0:5568,0:-501.241,-46.6597,0,-501.241,-46.6597,-501.241	1/2:9:0,4,5:0:0:4,5:144,175:-26.3406,-14.5865,-13.3824,-12.1095,0,-10.6043	1/2:3:0,2,1:0:0:2,1:72,35:-9.07908,-3.1976,-2.59554,-6.23466,0,-5.93363	1/1:34:0,34,0:0:0:34,0:1224,0:-110.461,-10.235,0,-110.461,-10.235,-110.461	1/2:39:0,11,28:0:0:11,28:377,986:-111.18,-80.579,-77.2677,-30.9462,0,-22.5174	1/2:37:0,20,17:0:0:20,17:720,576:-105.471,-46.7185,-40.6979,-59.1,0,-53.9825	1/1:68:0,68,0:0:0:68,0:2433,0:-219.21,-20.47,0,-219.21,-20.47,-219.21	1/1:28:0,27,0:0:0:27,0:972,0:-87.4381,-8.12781,0,-87.4381,-8.12781,-87.4381	1/2:52:0,25,26:0:0:25,26:896,916:-147.726,-74.6451,-67.1193,-73.1516,0,-65.3248	1/1:43:0,42,0:0:0:42,0:1512,0:-136.011,-12.6433,0,-136.011,-12.6433,-136.011	1/1:32:0,32,0:0:0:32,0:1137,0:-102.619,-9.63296,0,-102.619,-9.63296,-102.619	1/1:33:0,33,0:0:0:33,0:1188,0:-107.228,-9.93399,0,-107.228,-9.93399,-107.228	1/2:35:0,22,13:0:0:22,13:777,468:-101.817,-38.5463,-31.9236,-63.6277,0,-59.7143	1/1:23:0,23,0:0:0:23,0:828,0:-74.8441,-6.92369,0,-74.8441,-6.92369,-74.8441	1/1:19:0,19,0:0:0:19,0:680,0:-61.5292,-5.71957,0,-61.5292,-5.71957,-61.5292	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/2:113:0,51,62:0:0:51,62:1821,2197:-327.792,-179.331,-163.979,-148.817,0,-130.153	1/2:95:0,68,26:0:0:68,26:2435,935:-274.95,-76.372,-55.902,-198.673,0,-190.846	1/1:39:0,38,0:0:0:38,0:1368,0:-123.061,-11.4391,0,-123.061,-11.4391,-123.061	1/1:58:0,58,0:0:0:58,0:2065,0:-186.119,-17.4597,0,-186.119,-17.4597,-186.119	1/2:35:0,30,4:0:0:30,4:1065,143:-98.4294,-11.658,-2.6271,-86.7692,0,-85.5651	1/2:14:0,10,4:0:0:10,4:360,144:-41.4837,-12.1095,-9.0992,-29.734,0,-28.5299	1/2:149:0,89,59:0:0:89,59:3204,2097:-431.93,-170.497,-143.705,-261.43,0,-243.669	1/1:103:0,102,0:0:0:102,0:3653,0:-328.685,-30.7051,0,-328.685,-30.7051,-328.685	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/2:165:0,77,88:0:0:77,88:2753,3144:-480.52,-256.695,-233.516,-224.181,0,-197.691	1/2:99:0,52,47:0:0:52,47:1872,1653:-287.646,-134.9,-119.246,-153.102,0,-138.953	1/2:43:0,21,20:0:0:21,20:756,672:-116.096,-54.3999,-48.0783,-61.6858,0,-55.6652	1/2:11:0,8,3:0:0:8,3:273,107:-31.2187,-9.07908,-6.67084,-22.4919,0,-21.5889	1/1:12:0,12,0:0:0:12,0:417,0:-37.8602,-3.61236,0,-37.8602,-3.61236,-37.8602	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:118:0,60,57:0:0:60,57:2141,2025:-339.601,-165.063,-147.001,-174.593,0,-157.435	1/2:56:0,25,31:0:0:25,31:900,1093:-162.786,-89.3472,-81.8215,-73.7953,0,-64.4633	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	.:.:.:.:.:.:.:.	1/1:53:0,52,0:0:0:52,0:1868,0:-168.118,-15.6536,0,-168.118,-15.6536,-168.118	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:47:0,46,0:0:0:46,0:1641,0:-147.617,-13.8474,0,-147.617,-13.8474,-147.617	1/1:21:0,21,0:0:0:21,0:756,0:-68.3639,-6.32163,0,-68.3639,-6.32163,-68.3639	1/2:39:0,17,22:0:0:17,22:612,763:-112.308,-62.3659,-57.2484,-50.2959,0,-43.6733	1/2:47:0,28,19:0:0:28,19:1004,682:-137.878,-55.9894,-47.5606,-82.247,0,-76.5275	1/1:34:0,34,0:0:0:34,0:1220,0:-110.092,-10.235,0,-110.092,-10.235,-110.092	1/1:58:0,57,0:0:0:57,0:2044,0:-183.872,-17.1587,0,-183.872,-17.1587,-183.872	1/1:58:0,57,0:0:0:57,0:2037,0:-183.339,-17.1587,0,-183.339,-17.1587,-183.339	1/2:52:0,25,26:0:0:25,26:900,934:-149.765,-76.3267,-68.8009,-73.5699,0,-65.7431	1/2:42:0,18,24:0:0:18,24:648,853:-122.741,-69.8655,-64.447,-53.2333,0,-46.0086	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:70:0,67,0:0:0:67,0:2412,0:-217.004,-20.169,0,-217.004,-20.169,-217.004	1/1:10:0,10,0:0:0:10,0:360,0:-32.7336,-3.0103,0,-32.7336,-3.0103,-32.7336	1/2:7:0,4,3:0:0:4,3:144,95:-19.3712,-7.60521,-6.40109,-11.7497,0,-10.8466	1/2:56:0,33,23:0:0:33,23:1165,818:-161.674,-67.01,-57.076,-95.0183,0,-88.0946	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.0469,0,-14.4449	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,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chr12	22432666	.	A	C	34004.9	PASS	AB=0.416934;ABP=395.87;AC=43;AF=0.228723;AN=188;AO=2748;CIGAR=1X;DP=13392;DPB=13392;DPRA=1.17009;EPP=5970.22;EPPR=23114;GTI=1;LEN=1;MEANALT=1.02174;MQM=34.8246;MQMR=23.8655;NS=94;NUMALT=1;ODDS=1.92095;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98444;QR=380894;RO=10643;RPL=0;RPP=5970.22;RPPR=23114;RPR=2748;RUN=1;SAF=2748;SAP=5970.22;SAR=0;SRF=10643;SRP=23114;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:48,0:48:1724:0:0:0,-14.4494,-99.6417	0/1:174:96,78:96:3436:78:2800:-172.729,0,-147.043	0/1:137:82,55:82:2932:55:1964:-118.315,0,-127.765	0/0:362:362,0:362:12952:0:0:0,-108.973,-786.695	0/1:170:93,77:93:3282:77:2748:-169.813,0,-142.672	0/1:108:45,63:45:1605:63:2245:-147.934,0,-63.7728	0/0:281:281,0:281:10029:0:0:0,-84.5894,-608.457	0/1:239:151,88:151:5412:88:3148:-183.074,0,-240.417	0/1:161:78,83:78:2769:83:2968:-190.949,0,-112.652	0/0:186:186,0:186:6672:0:0:0,-55.9916,-401.317	0/0:104:104,0:104:3744:0:0:0,-31.3071,-224.022	0/1:103:55,48:55:1972:48:1712:-107.86,0,-83.7376	0/0:98:98,0:98:3516:0:0:0,-29.5009,-202.335	0/0:111:111,0:111:3934:0:0:0,-33.4143,-233.915	0/0:114:114,0:114:4092:0:0:0,-34.3174,-245.897	0/1:79:44,35:44:1561:35:1256:-78.7845,0,-70.9903	0/0:108:108,0:108:3876:0:0:0,-32.5112,-223.921	0/0:100:100,0:100:3565:0:0:0,-30.103,-208.034	0/0:71:71,0:71:2552:0:0:0,-21.3731,-148.588	0/1:302:175,127:175:6280:127:4540:-282.089,0,-283.749	0/1:211:111,100:111:3972:100:3580:-227.275,0,-169.114	0/0:161:161,0:161:5764:0:0:0,-48.4658,-319.679	0/0:75:75,0:75:2692:0:0:0,-22.5772,-161.964	0/0:197:189,8:189:6780:8:288:0,-35.6059,-372.255	0/1:115:73,42:73:2605:42:1504:-87.1842,0,-117.782	0/1:521:309,212:309:11068:212:7592:-448.49,0,-459.703	0/0:363:363,0:363:12980:0:0:0,-109.274,-749.865	0/0:56:56,0:56:2012:0:0:0,-16.8577,-118.496	0/1:286:187,98:187:6668:98:3508:-189.369,0,-289.311	0/1:166:89,77:89:3188:77:2756:-170.353,0,-137.856	0/1:116:90,26:90:3220:26:924:-40.3833,0,-159.807	0/1:9:4,5:4:144:5:180:-12.2231,0,-5.72253	0/0:14:14,0:14:500:0:0:0,-4.21442,-30.0974	0/0:4:4,0:4:144:0:0:0,-1.20412,-8.4318	0/1:5:2,3:2:72:3:108:-7.58409,0,-2.82469	0/0:6:6,0:6:212:0:0:0,-1.80618,-13.3928	0/1:277:149,128:149:5337:128:4598:-280.911,0,-212.783	0/1:212:136,76:136:4888:76:2732:-156.059,0,-218.697	0/0:97:97,0:97:3492:0:0:0,-29.1999,-204.037	0/0:3:3,0:3:108:0:0:0,-0.90309,-6.38082	0/0:224:224,0:224:8037:0:0:0,-67.4307,-466.195	0/0:61:61,0:61:2196:0:0:0,-18.3628,-127.011	0/0:154:154,0:154:5505:0:0:0,-46.3586,-320.637	0/0:154:154,0:154:5528:0:0:0,-46.3586,-335.986	0/1:96:46,50:46:1652:50:1792:-119.764,0,-71.801	0/1:200:116,84:116:4090:84:3008:-178.245,0,-171.78	0/0:198:198,0:198:7073:0:0:0,-59.6039,-411.826	0/0:276:276,0:276:9896:0:0:0,-83.0843,-591.309	0/0:121:121,0:121:4340:0:0:0,-36.4246,-261.825	0/1:224:144,80:144:5148:80:2872:-168.116,0,-243.961	0/1:129:78,51:78:2769:51:1836:-106.656,0,-118.905	0/0:7:7,0:7:252:0:0:0,-2.10721,-15.1906	0/0:193:193,0:193:6857:0:0:0,-58.0988,-399.512	0/0:81:81,0:81:2900:0:0:0,-24.3834,-160.713	0/1:25:17,8:17:612:8:288:-16.1712,0,-27.4821	0/1:196:119,77:119:4264:77:2764:-165.444,0,-186.329	0/0:103:103,0:103:3696:0:0:0,-31.0061,-223.019	0/1:21:17,4:17:604:4:144:-5.57563,0,-27.2549	0/0:30:30,0:30:1076:0:0:0,-9.0309,-58.9632	0/0:79:79,0:79:2832:0:0:0,-23.7814,-165.695	0/1:125:64,61:64:2292:61:2196:-144.099,0,-100.105	0/0:8:8,0:8:288:0:0:0,-2.40824,-17.2404	0/0:377:377,0:377:13497:0:0:0,-113.488,-758.139	0/1:275:182,93:182:6508:93:3340:-191.927,0,-307.532	0/0:127:121,6:121:4324:6:212:0,-20.5809,-234.975	0/1:109:66,43:66:2352:43:1529:-93.9636,0,-108.645	0/1:333:201,132:201:7177:132:4732:-287.349,0,-334.022	0/0:139:139,0:139:4969:0:0:0,-41.8432,-302.412	0/0:46:46,0:46:1652:0:0:0,-13.8474,-97.3115	0/1:76:40,36:40:1436:36:1292:-78.9757,0,-59.5325	0/1:124:69,55:69:2468:55:1972:-119.711,0,-103.126	0/0:27:27,0:27:968:0:0:0,-8.12781,-58.3728	0/0:91:91,0:91:3248:0:0:0,-27.3937,-190.941	0/1:140:74,66:74:2660:66:2360:-149.026,0,-111.169	0/1:227:182,45:182:6504:45:1612:-63.4824,0,-314.928	0/0:234:234,0:234:8334:0:0:0,-70.441,-499.982	0/0:171:171,0:171:6114:0:0:0,-51.4761,-352.822	0/1:161:108,53:108:3856:53:1900:-105.822,0,-175.738	0/1:21:8,13:8:288:13:464:-31.7811,0,-10.3141	0/0:169:169,0:169:6056:0:0:0,-50.8741,-352.456	0/1:151:60,91:60:2152:91:3260:-218.327,0,-80.0502	0/0:312:312,0:312:11168:0:0:0,-93.9214,-668.86	0/0:122:122,0:122:4380:0:0:0,-36.7257,-261.902	0/1:71:37,34:37:1332:34:1224:-79.2959,0,-59.4028	0/0:160:160,0:160:5748:0:0:0,-48.1648,-343.654	0/0:200:199,1:199:7148:1:36:0,-56.907,-428.398	0/1:66:37,29:37:1328:29:1044:-65.5325,0,-58.4871	0/0:87:87,0:87:3128:0:0:0,-26.1896,-183.873	0/1:87:49,38:49:1744:38:1356:-82.0544,0,-77.8576	0/1:53:28,25:28:1004:25:892:-54.6839,0,-43.1661	0/1:141:77,64:77:2757:64:2300:-143.56,0,-121.646	0/1:113:33,80:33:1188:80:2868:-201.294,0,-36.3729	0/0:187:187,0:187:6720:0:0:0,-56.2926,-401.448	0/0:140:140,0:140:5028:0:0:0,-42.1442,-302.041
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chr12	22432714	.	C	G	175277	PASS	AB=0.440799;ABP=332.366;AC=142;AF=0.755319;AN=188;AO=12249;CIGAR=1X;DP=18353;DPB=18353;DPRA=0;EPP=26601.4;EPPR=13249;GTI=11;LEN=1;MEANALT=1.03191;MQM=28.9262;MQMR=48.1907;NS=94;NUMALT=1;ODDS=3.11235;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=437125;QR=217079;RO=6100;RPL=10384;RPP=12868.6;RPPR=115.444;RPR=1865;RUN=1;SAF=10384;SAP=12868.6;SAR=1865;SRF=2769;SRP=115.444;SRR=3331;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:50:0,50:0:0:50:1796:-105.184,-15.0515,0	0/1:236:140,96:140:5012:96:3440:-128.44,0,-352.772	0/1:266:182,84:182:6496:84:3001:-96.331,0,-486.22	1/1:362:1,361:1:36:361:12939:-779.35,-105.375,0	0/1:205:114,91:114:4058:91:3267:-126.519,0,-279.949	0/1:138:92,46:92:3291:46:1644:-57.1042,0,-232.078	1/1:281:0,281:0:0:281:10019:-610.488,-84.5894,0	0/1:386:235,151:235:8385:151:5377:-194.463,0,-607.589	0/1:226:146,80:146:5215:80:2848:-98.4894,0,-373.858	1/1:186:1,185:1:36:185:6607:-394.598,-52.3933,0	1/1:104:0,104:0:0:104:3731:-224.744,-31.3071,0	0/1:168:112,56:112:3992:56:1989:-65.9354,0,-293.674	1/1:102:0,102:0:0:102:3659:-216.758,-30.7051,0	1/1:107:0,107:0:0:107:3805:-221.376,-32.2102,0	1/1:112:0,112:0:0:112:3986:-238.858,-33.7154,0	0/1:113:73,40:73:2585:40:1421:-49.0623,0,-187.581	1/1:108:1,107:1:36:107:3844:-218.313,-28.913,0	1/1:100:0,100:0:0:100:3580:-209.512,-30.103,0	1/1:69:0,69:0:0:69:2458:-141.878,-20.7711,0	0/1:432:257,175:257:9151:175:6277:-245.44,0,-657.05	0/1:302:188,114:188:6702:114:4067:-149.953,0,-480.096	1/1:381:0,381:0:0:381:13567:-1021.64,-114.692,0	1/1:77:0,77:0:0:77:2768:-169.283,-23.1793,0	1/1:200:13,187:13:468:187:6642:-348.979,-20.3033,0	0/1:170:94,76:94:3352:76:2715:-109.703,0,-237.086	0/1:1059:456,603:456:16203:603:21433:-1233.66,0,-1063.58	1/1:373:0,373:0:0:373:13325:-782.11,-112.284,0	1/1:52:0,52:0:0:52:1872:-106.964,-15.6536,0	0/1:693:275,418:275:9799:418:14845:-901.102,0,-631.192	0/1:275:191,84:191:6815:84:2986:-89.7962,0,-502.75	0/1:165:72,93:72:2537:93:3340:-154.904,0,-171.254	0/1:12:8,4:8:288:4:144:-4.81944,0,-21.0485	1/1:14:0,14:0:0:14:504:-30.1385,-4.21442,0	1/1:4:0,4:0:0:4:144:-8.4318,-1.20412,0	0/0:22:20,2:20:716:2:72:0,-2.29282,-59.4819	0/1:25:18,7:18:644:7:248:-9.12215,0,-50.7187	0/1:486:215,271:215:7618:271:9683:-541.691,0,-491.524	0/1:308:171,137:171:6100:137:4893:-192.028,0,-429.482	1/1:96:1,95:1:36:95:3371:-192.627,-25.3006,0	0/1:8:5,3:5:180:3:99:-3.85705,0,-14.121	1/1:231:0,231:0:0:231:8246:-491.213,-69.5379,0	1/1:61:0,61:0:0:61:2170:-126.747,-18.3628,0	1/1:161:0,161:0:0:161:5752:-341.906,-48.4658,0	1/1:144:0,144:0:0:144:5137:-307.367,-43.3483,0	0/1:128:87,41:87:3085:41:1457:-48.9528,0,-225.348	0/1:418:164,254:164:5866:254:9018:-544.457,0,-369.961	1/1:202:0,202:0:0:202:7211:-421.416,-60.8081,0	1/1:278:1,277:1:36:277:9901:-597.093,-80.0881,0	1/1:121:0,121:0:0:121:4333:-260.68,-36.4246,0	0/1:402:260,140:260:9304:140:4998:-179.616,0,-693.399	0/1:349:142,207:142:5072:207:7384:-465.543,0,-331.877	1/1:7:0,7:0:0:7:252:-15.1906,-2.10721,0	1/1:202:0,202:0:0:202:7200:-425.712,-60.8081,0	1/1:223:1,222:1:36:222:7886:-609.155,-63.5314,0	0/1:32:15,17:15:532:17:593:-24.9943,0,-35.4835	0/1:303:184,119:184:6450:119:4259:-155.429,0,-465.553	1/1:106:0,106:0:0:106:3767:-231.617,-31.9092,0	0/1:45:10,35:10:348:35:1239:-76.8854,0,-16.8669	1/1:51:0,51:0:0:51:1828:-128.121,-15.3525,0	1/1:78:1,77:1:36:77:2753:-157.89,-19.8821,0	0/1:183:119,64:119:4253:64:2300:-82.7256,0,-311.517	1/1:8:0,8:0:0:8:284:-17.2065,-2.40824,0	1/1:622:0,621:0:0:621:22168:-1540.77,-186.94,0	0/1:442:256,186:256:9066:186:6638:-270.99,0,-657.774	1/1:128:9,119:9:311:119:4244:-220.826,-11.8701,0	0/1:181:117,64:117:4183:64:2285:-82.6131,0,-310.476	0/1:446:245,201:245:8692:201:7140:-298.96,0,-608.582	1/1:141:1,140:1:36:140:4985:-302.839,-39.1462,0	1/1:47:2,45:2:72:45:1607:-85.959,-7.31169,0	0/1:112:72,40:72:2575:40:1436:-48.6954,0,-184.045	0/1:194:104,90:104:3676:90:3216:-149.989,0,-252.846	1/1:27:0,27:0:0:27:960:-58.3173,-8.12781,0	1/1:94:0,94:0:0:94:3323:-200.572,-28.2968,0	0/1:202:125,77:125:4452:77:2751:-102.06,0,-316.706	0/1:338:161,177:161:5710:177:6326:-266.487,0,-398.699	1/1:241:0,241:0:0:241:8614:-522.962,-72.5482,0	1/1:173:0,173:0:0:173:6151:-358.934,-52.0782,0	0/1:259:151,108:151:5377:108:3864:-146.312,0,-390.168	0/1:31:23,8:23:824:8:288:-7.30379,0,-61.0108	1/1:170:0,170:0:0:170:6055:-355.874,-51.1751,0	0/1:258:199,59:199:7059:59:2120:-44.6444,0,-525.017	1/1:320:0,320:0:0:320:11400:-696.047,-96.3296,0	1/1:123:0,123:0:0:123:4385:-265.317,-37.0267,0	0/1:131:94,37:94:3372:37:1332:-41.6249,0,-254.213	1/1:160:0,160:0:0:160:5747:-345.813,-48.1648,0	1/1:199:1,198:1:36:198:7104:-424.9,-56.6059,0	0/1:78:40,38:40:1410:38:1364:-58.144,0,-95.5192	1/1:85:0,85:0:0:85:3048:-179.931,-25.5876,0	0/1:132:86,46:86:3071:46:1639:-55.8613,0,-223.033	0/1:89:61,28:61:2157:28:993:-32.0038,0,-157.298	0/1:235:163,71:163:5797:71:2552:-75.5636,0,-431.146	0/1:158:125,33:125:4434:33:1188:-22.8265,0,-330.791	1/1:192:0,192:0:0:192:6856:-418.083,-57.7978,0	1/1:139:0,139:0:0:139:4972:-299.771,-41.8432,0
chr12	22432731	.	A	G	55500.2	PASS	AB=0.44223;ABP=231.324;AC=45;AF=0.239362;AN=188;AO=3498;CIGAR=1X;DP=16126;DPB=16126;DPRA=1.01032;EPP=7598.82;EPPR=27383.1;GTI=1;LEN=1;MEANALT=1.01887;MQM=59.235;MQMR=59.9404;NS=94;NUMALT=1;ODDS=3.05032;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=124305;QR=451344;RO=12625;RPL=0;RPP=7598.82;RPPR=27383.1;RPR=3498;RUN=1;SAF=0;SAP=7598.82;SAR=3498;SRF=0;SRP=27417.8;SRR=12625;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:154:154,0:154:5471:0:0:0,-46.3586,-491.884	0/1:148:83,64:83:2953:64:2300:-162.754,0,-221.522	0/1:261:127,134:127:4529:134:4775:-351.119,0,-329.204	0/0:501:501,0:501:17883:0:0:0,-150.816,-1609.07	0/1:103:60,43:60:2156:43:1536:-107.527,0,-163.301	0/1:58:25,33:25:900:33:1167:-87.7236,0,-63.8613	0/0:193:192,0:192:6900:0:0:0,-57.7978,-620.692	0/1:340:181,159:181:6464:159:5599:-401.429,0,-479.49	0/1:206:132,74:132:4703:74:2625:-174.413,0,-361.42	0/0:213:212,0:212:7554:0:0:0,-63.8184,-679.67	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:145:80,65:80:2850:65:2316:-165.045,0,-213.088	0/0:81:81,0:81:2883:0:0:0,-24.3834,-259.707	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/1:62:26,36:26:924:36:1288:-97.5597,0,-64.8138	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.303	0/0:60:60,0:60:2130:0:0:0,-18.0618,-191.967	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:335:197,138:197:7067:138:4880:-337.733,0,-535.243	0/1:261:169,92:169:6043:92:3296:-217.95,0,-464.346	0/0:246:246,0:246:8808:0:0:0,-74.0534,-792.634	0/0:260:260,0:260:9296:0:0:0,-78.2678,-836.599	0/0:181:176,5:176:6312:5:176:0,-38.3014,-551.975	0/1:223:165,58:165:5908:58:2049:-117.416,0,-464.695	0/1:572:323,249:323:11537:249:8852:-624.273,0,-864.441	0/0:580:580,0:580:20703:0:0:0,-174.597,-1862.76	0/0:41:41,0:41:1468:0:0:0,-12.3422,-132.411	0/1:433:255,178:255:9120:178:6343:-440.511,0,-690.418	0/1:201:84,117:84:3001:117:4171:-314.918,0,-209.813	0/1:127:79,48:79:2815:48:1719:-116.709,0,-215.359	0/1:12:10,2:10:356:2:72:-3.22436,0,-28.7689	0/0:48:48,0:48:1713:0:0:0,-14.4494,-154.454	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:26:7,19:7:252:19:671:-52.889,0,-15.2022	0/1:37:19,18:19:680:18:648:-47.4676,0,-50.3911	0/1:229:137,92:137:4889:92:3244:-222.863,0,-371.218	0/1:214:121,93:121:4305:93:3330:-235.424,0,-322.578	0/0:57:56,1:56:2012:1:36:0,-13.5604,-177.755	0/1:8:3,5:3:108:5:180:-14.121,0,-7.66693	0/0:327:327,0:327:11669:0:0:0,-98.4368,-1050.08	0/0:44:44,0:44:1563:0:0:0,-13.2453,-140.956	0/0:230:230,0:230:8243:0:0:0,-69.2369,-741.867	0/0:82:82,0:82:2940:0:0:0,-24.6845,-264.834	0/1:64:25,39:25:883:39:1342:-101.134,0,-60.5099	0/1:232:148,84:148:5308:84:3002:-200.262,0,-407.986	0/0:240:240,0:240:8595:0:0:0,-72.2472,-773.545	0/0:249:248,1:248:8891:1:36:0,-71.3582,-796.556	0/0:130:130,0:130:4647:0:0:0,-39.1339,-418.391	0/1:416:232,184:232:8277:184:6551:-463.296,0,-619.705	0/1:228:137,91:137:4903:91:3248:-223.824,0,-372.083	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:283:283,0:283:10124:0:0:0,-85.1915,-910.929	0/0:149:148,1:148:5289:1:36:0,-41.2552,-472.542	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:254:137,117:137:4875:117:4128:-294.734,0,-362.441	0/0:129:129,0:129:4601:0:0:0,-38.8329,-414.249	0/1:24:18,6:18:635:6:198:-10.9152,0,-50.2522	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:147:146,1:146:5219:1:36:0,-40.6531,-466.25	0/1:120:63,57:63:2244:57:2039:-147.658,0,-166.1	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:275:275,0:275:9876:0:0:0,-82.7832,-888.773	0/1:395:226,169:226:8099:169:5981:-419.013,0,-610.008	0/0:154:151,3:151:5415:3:108:0,-36.2834,-477.398	0/1:176:96,80:96:3410:80:2812:-200.24,0,-254.131	0/1:273:156,117:156:5549:117:4150:-290.614,0,-417.353	0/0:356:356,0:356:12724:0:0:0,-107.167,-1144.93	0/0:42:40,2:40:1424:2:72:0,-5.80654,-121.621	0/1:81:40,41:40:1440:41:1444:-105.799,0,-105.497	0/1:72:23,49:23:824:49:1743:-135.413,0,-52.8092	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/0:278:277,1:277:9911:1:36:0,-80.0881,-888.33	0/1:145:86,59:86:3068:59:2089:-144.61,0,-232.7	0/1:341:214,127:214:7664:127:4546:-306.573,0,-587.136	0/0:322:322,0:322:11572:0:0:0,-96.9317,-1041.29	0/0:259:259,0:259:9266:0:0:0,-77.9668,-833.894	0/1:287:183,104:183:6535:104:3701:-246.867,0,-501.806	0/1:26:14,12:14:504:12:428:-31.0311,0,-37.8667	0/0:192:192,0:192:6875:0:0:0,-57.7978,-618.81	0/1:217:109,108:109:3908:108:3830:-279.047,0,-286.589	0/0:529:529,0:529:18924:0:0:0,-159.245,-1702.56	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/1:99:36,63:36:1288:63:2260:-173.861,0,-86.4216	0/0:63:63,0:63:2246:0:0:0,-18.9649,-202.402	0/0:181:181,0:181:6439:0:0:0,-54.4864,-579.577	0/1:25:15,10:15:540:10:347:-24.0379,0,-41.4108	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.86	0/1:103:52,51:52:1857:51:1836:-134.478,0,-136.397	0/1:57:19,38:19:684:38:1351:-104.686,0,-44.7316	0/1:148:44,104:44:1576:104:3686:-287.192,0,-97.5791	0/1:83:34,49:34:1220:49:1748:-132.573,0,-85.0606	0/0:311:311,0:311:11107:0:0:0,-93.6203,-999.516	0/0:140:140,0:140:5002:0:0:0,-42.1442,-450.327
chr12	22433017	.	TTTA	TTTT,CTTT	161355	PASS	AB=0.590909,0.404071;ABP=260.428,289.64;AC=143,45;AF=0.760638,0.239362;AN=188;AO=6215,1466;CIGAR=3M1X,1X2M1X;DP=7714;DPB=7714;DPRA=82.9355,1.29562;EPP=13498.7,3186.39;EPPR=13.8677;GTI=3;LEN=1,4;MEANALT=1.83871,2.35294;MQM=50.2819,37.0607;MQMR=57;NS=94;NUMALT=2;ODDS=5.18024;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=222766,51517;QR=133;RO=5;RPL=0,0;RPP=13498.7,3186.39;RPPR=13.8677;RPR=6215,1466;RUN=1,1;SAF=6215,1466;SAP=13498.7,3186.39;SAR=0,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29,0:0:0:29,0:1036,0:-92.9113,-8.72987,0,-92.9113,-8.72987,-92.9113	1/2:87:0,65,21:0:0:65,21:2336,704:-241.806,-52.3775,-32.8105,-189.467,0,-183.145	1/2:121:0,77,44:0:0:77,44:2764,1533:-337.797,-114.134,-90.9542,-223.997,0,-210.752	1/1:188:0,186,0:0:0:186,0:6671,0:-596.364,-55.9916,0,-596.364,-55.9916,-596.364	1/2:51:0,32,19:0:0:32,19:1148,672:-142.713,-49.8713,-40.2383,-93.1766,0,-87.457	1/2:86:0,49,37:0:0:49,37:1741,1301:-236.991,-96.1316,-81.3812,-141.194,0,-130.056	1/1:158:0,157,1:0:0:157,1:5644,30:-505.368,-47.2617,0,-503.027,-44.6266,-502.726	1/2:110:0,68,41:0:0:68,41:2432,1416:-301.314,-104.339,-83.8689,-197.023,0,-184.68	1/2:107:0,66,41:0:0:66,41:2364,1439:-296.487,-105.575,-85.7071,-191.244,0,-178.902	1/1:111:0,111,0:0:0:111,0:3975,0:-356.144,-33.4143,0,-356.144,-33.4143,-356.144	1/1:25:0,25,0:0:0:25,0:892,0:-80.0856,-7.52575,0,-80.0856,-7.52575,-80.0856	1/2:34:0,15,19:0:0:15,19:540,683:-94.5057,-50.6877,-46.1722,-44.1628,0,-38.4432	1/1:31:0,30,0:0:0:30,0:1076,0:-96.1913,-9.0309,0,-96.1913,-9.0309,-96.1913	1/1:33:0,33,0:0:0:33,0:1188,0:-106.609,-9.93399,0,-106.609,-9.93399,-106.609	1/1:19:0,19,0:0:0:19,0:667,0:-60.1283,-5.71957,0,-60.1283,-5.71957,-60.1283	1/2:24:0,12,12:0:0:12,12:423,427:-66.3754,-32.1018,-28.4894,-34.6128,0,-31.0004	1/1:23:0,23,0:0:0:23,0:828,0:-74.2469,-6.92369,0,-74.2469,-6.92369,-74.2469	1/1:28:0,28,0:0:0:28,0:1008,0:-90.6076,-8.42884,0,-90.6076,-8.42884,-90.6076	1/1:17:0,17,0:0:0:17,0:612,0:-55.179,-5.11751,0,-55.179,-5.11751,-55.179	1/2:192:0,134,57:0:0:134,57:4808,1994:-540.34,-150.206,-109.868,-390.177,0,-373.019	1/2:116:0,74,42:0:0:74,42:2650,1480:-323.526,-109.233,-86.9563,-214.627,0,-201.984	1/1:193:0,192,1:0:0:192,1:6892,36:-618.545,-57.7978,0,-616.384,-55.3626,-616.083	1/1:117:0,117,0:0:0:117,0:4208,0:-377.203,-35.2205,0,-377.203,-35.2205,-377.203	1/1:101:1,95,5:1:24:95,5:3400,172:-301.903,-26.7523,0,-289.317,-15.6426,-289.669	1/2:76:0,32,44:0:0:32,44:1152,1556:-207.901,-114.428,-104.795,-93.8163,0,-80.5709	1/2:230:0,119,109:0:0:119,109:4264,3850:-646.34,-299.562,-263.739,-346.848,0,-314.035	1/1:212:0,212,0:0:0:212,0:7599,0:-679.004,-63.8184,0,-679.004,-63.8184,-679.004	1/1:11:0,11,0:0:0:11,0:396,0:-35.7877,-3.31133,0,-35.7877,-3.31133,-35.7877	1/2:231:0,156,74:0:0:156,74:5592,2594:-656.88,-202.041,-155.08,-454.837,0,-432.561	1/2:121:1,74,45:1:36:74,45:2652,1592:-329.071,-115.475,-96.1366,-210.999,0,-200.39	1/2:103:0,79,23:0:0:79,23:2828,809:-290.99,-62.1864,-38.4051,-228.927,0,-222.003	1/2:4:0,3,1:0:0:3,1:108,36:-11.7786,-2.99799,-2.0949,-9.11746,0,-8.81643	1/1:20:0,20,0:0:0:20,0:716,0:-64.1834,-6.0206,0,-64.1834,-6.0206,-64.1834	1/1:6:0,6,0:0:0:6,0:216,0:-19.7144,-1.80618,0,-19.7144,-1.80618,-19.7144	2/2:1:0,0,1:0:0:0,1:0,36:-3.29902,-3.29902,-3.29902,-0.30103,-0.30103,0	1/2:4:0,3,1:0:0:3,1:108,36:-11.7904,-2.99799,-2.0949,-9.12945,0,-8.82842	1/2:100:0,47,52:0:0:47,52:1679,1853:-280.93,-144.24,-130.092,-136.741,0,-121.088	1/2:195:0,115,79:0:0:115,79:4140,2761:-538.228,-204.042,-169.424,-334.287,0,-310.505	1/1:17:1,16,0:1:25:16,0:576,0:-49.4544,-2.61765,0,-49.7554,-4.81648,-51.6979	1/1:4:0,4,0:0:0:4,0:144,0:-13.2454,-1.20412,0,-13.2454,-1.20412,-13.2454	1/1:153:0,152,0:0:0:152,0:5437,0:-485.274,-45.7566,0,-485.274,-45.7566,-485.274	1/1:16:0,16,0:0:0:16,0:576,0:-51.8921,-4.81648,0,-51.8921,-4.81648,-51.8921	1/1:203:0,202,0:0:0:202,0:7252,0:-647.983,-60.8081,0,-647.983,-60.8081,-647.983	1/1:18:0,18,0:0:0:18,0:644,0:-57.9039,-5.41854,0,-57.9039,-5.41854,-57.9039	1/2:31:0,18,13:0:0:18,13:648,445:-86.8968,-34.3811,-28.9626,-52.854,0,-48.9406	1/2:75:0,47,28:0:0:47,28:1665,978:-209.746,-74.4484,-60.2999,-135.634,0,-127.206	1/1:114:0,111,2:0:0:111,2:3965,72:-354.867,-33.4143,0,-349.531,-28.0227,-348.929	1/1:220:1,219,0:1:23:219,0:7850,0:-699.701,-63.9293,0,-700.002,-65.9256,-701.768	1/1:86:0,86,0:0:0:86,0:3096,0:-277.754,-25.8886,0,-277.754,-25.8886,-277.754	1/2:88:0,60,28:0:0:60,28:2140,987:-248.174,-74.6912,-56.6294,-173.819,0,-165.39	1/2:144:0,68,76:0:0:68,76:2440,2677:-407.079,-208.35,-187.88,-199.078,0,-176.199	1/1:4:0,4,0:0:0:4,0:144,0:-13.27,-1.20412,0,-13.27,-1.20412,-13.27	1/1:182:0,182,0:0:0:182,0:6540,0:-584.901,-54.7875,0,-584.901,-54.7875,-584.901	1/1:50:0,50,0:0:0:50,0:1792,0:-161.085,-15.0515,0,-161.085,-15.0515,-161.085	1/2:16:0,10,6:0:0:10,6:360,209:-45.2997,-16.0261,-13.0158,-29.6107,0,-27.8045	1/2:104:1,68,35:1:25:68,35:2408,1240:-283.438,-89.5711,-71.0479,-192.302,0,-183.714	1/1:55:0,55,0:0:0:55,0:1961,0:-176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chr12	22439489	.	A	G	10473.6	PASS	AB=0.411258;ABP=122.1;AC=48;AF=0.255319;AN=188;AO=728;CIGAR=1X;DP=3687;DPB=3687;DPRA=1.11403;EPP=1583.84;EPPR=6428.4;GTI=3;LEN=1;MEANALT=1;MQM=59.6923;MQMR=59.9777;NS=94;NUMALT=1;ODDS=0.887996;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=25663;QR=105861;RO=2959;RPL=0;RPP=1583.84;RPPR=6428.4;RPR=728;RUN=1;SAF=0;SAP=1583.84;SAR=728;SRF=0;SRP=6428.4;SRR=2959;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:18:11,7:11:392:7:243:-16.7807,0,-30.2015	0/1:76:38,38:38:1360:38:1351:-99.0113,0,-99.8223	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/1:51:26,25:26:932:25:887:-64.7956,0,-68.8463	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/1:46:27,19:27:964:19:652:-45.1427,0,-73.2213	0/1:27:15,12:15:540:12:410:-29.0987,0,-40.8087	0/0:23:23,0:23:820:0:0:0,-6.92369,-74.1225	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:47:21,26:21:752:26:919:-68.8696,0,-53.8578	0/0:44:44,0:44:1562:0:0:0,-13.2453,-140.87	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:45:45,0:45:1600:0:0:0,-13.5463,-144.29	0/1:28:16,12:16:568:12:432:-30.7924,0,-43.023	0/0:24:24,0:24:855:0:0:0,-7.22472,-77.2702	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/1:32:17,15:17:612:15:531:-38.4713,0,-45.7805	0/1:59:40,19:40:1440:19:667:-42.5939,0,-112.137	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:61:60,1:60:2156:1:36:0,-14.7646,-190.622	0/1:45:38,7:38:1360:7:252:-9.48261,0,-109.154	0/1:19:7,12:7:252:12:428:-33.1392,0,-17.3094	0/1:107:62,45:62:2232:45:1559:-108.386,0,-168.933	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/0:17:17,0:17:591:0:0:0,-5.11751,-53.5153	0/1:65:35,30:35:1260:30:1043:-74.6082,0,-94.1385	0/1:41:22,19:22:788:19:657:-47.108,0,-58.9026	0/1:57:39,18:39:1396:18:644:-41.1305,0,-108.78	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/1:94:51,43:51:1810:43:1540:-110.592,0,-134.883	0/1:59:37,22:37:1332:22:783:-53.0276,0,-102.422	0/0:23:23,0:23:803:0:0:0,-6.92369,-72.5884	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:77:76,1:76:2732:1:36:0,-19.581,-242.524	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/0:72:72,0:72:2555:0:0:0,-21.6742,-230.198	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/1:55:40,15:40:1440:15:517:-30.2958,0,-113.336	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:88:88,0:88:3140:0:0:0,-26.4906,-282.337	0/0:44:44,0:44:1576:0:0:0,-13.2453,-142.132	0/1:30:20,10:20:716:10:347:-22.5301,0,-55.7368	0/1:68:43,25:43:1548:25:861:-57.3266,0,-119.143	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:44:27,17:27:972:17:588:-39.9983,0,-74.5526	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:33:33,0:33:1169:0:0:0,-9.93399,-105.513	0/1:68:43,25:43:1535:25:891:-60.0364,0,-117.972	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:94:93,1:93:3308:1:36:0,-24.6985,-294.339	0/1:56:36,20:36:1292:20:694:-45.6807,0,-99.7261	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:37:21,16:21:748:16:576:-41.0345,0,-56.5072	0/1:59:33,26:33:1184:26:923:-65.626,0,-89.1075	0/0:51:51,0:51:1808:0:0:0,-15.3525,-162.999	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:15:6,9:6:216:9:311:-23.8083,0,-15.2751	0/1:34:25,9:25:868:9:320:-18.9073,0,-68.1979	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:40:27,13:27:972:13:464:-30.0563,0,-75.7567	0/1:86:54,32:54:1940:32:1140:-76.949,0,-148.988	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/0:76:76,0:76:2709:0:0:0,-22.8783,-244.053	0/1:32:20,12:20:720:12:413:-27.8471,0,-55.4958	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:39:39,0:39:1377:0:0:0,-11.7402,-124.227	0/1:37:18,19:18:640:19:680:-50.3911,0,-46.7912	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/1:34:20,14:20:712:14:500:-35.1012,0,-54.1716	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:56:56,0:56:2004:0:0:0,-16.8577,-180.634	0/1:34:20,14:20:720:14:492:-34.3773,0,-54.8938	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/1:24:13,11:13:468:11:383:-27.5669,0,-35.2349	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:27:11,16:11:396:16:572:-43.6847,0,-27.8549	0/1:23:7,16:7:252:16:553:-43.1656,0,-16.1053	0/0:66:66,0:66:2367:0:0:0,-19.868,-213.287	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445
chr12	22439515	.	C	T	11060.9	PASS	AB=0.41638;ABP=109.052;AC=48;AF=0.255319;AN=188;AO=738;CIGAR=1X;DP=3696;DPB=3696;DPRA=1.04878;EPP=1588.23;EPPR=6294.43;GTI=3;LEN=1;MEANALT=1;MQM=59.6152;MQMR=59.9706;NS=94;NUMALT=1;ODDS=0.632193;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26293;QR=105684;RO=2957;RPL=736;RPP=1588.23;RPPR=6294.43;RPR=2;RUN=1;SAF=0;SAP=1605.56;SAR=738;SRF=0;SRP=6424.05;SRR=2957;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:17:10,7:10:360:7:240:-16.8089,0,-27.6268	0/1:74:36,38:36:1296:38:1336:-98.2609,0,-94.6677	0/0:103:103,0:103:3685:0:0:0,-31.0061,-331.851	0/1:51:26,25:26:932:25:892:-65.2472,0,-68.8463	0/1:9:4,5:4:144:5:176:-13.4757,0,-10.6043	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:47:27,20:27:949:20:720:-50.9722,0,-71.5662	0/1:25:14,11:14:500:11:396:-28.457,0,-37.8104	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8839	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4111	0/1:47:21,26:21:756:26:932:-70.0423,0,-54.2188	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:22:22,0:22:765:0:0:0,-6.62266,-69.1677	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/1:27:15,12:15:536:12:432:-31.0934,0,-40.447	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:31:16,15:16:576:15:540:-39.5869,0,-42.8431	0/1:59:39,20:39:1404:20:704:-45.9191,0,-108.899	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/0:60:59,1:59:2120:1:36:0,-14.4635,-187.384	0/1:46:38,8:38:1345:8:284:-12.056,0,-107.501	0/1:18:7,11:7:248:11:396:-30.5642,0,-17.2457	0/1:108:63,45:63:2256:45:1604:-112.138,0,-170.792	0/0:56:56,0:56:2008:0:0:0,-16.8577,-180.993	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:65:36,29:36:1284:29:1028:-73.2652,0,-96.2965	0/1:41:21,20:21:756:20:716:-52.4255,0,-56.025	0/1:57:38,19:38:1349:19:661:-42.6528,0,-104.55	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:93:49,44:49:1752:44:1576:-114.132,0,-129.968	0/1:63:39,24:39:1404:24:852:-58.0309,0,-107.694	0/0:23:23,0:23:805:0:0:0,-6.92369,-72.7675	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:77:76,1:76:2721:1:36:0,-19.581,-241.533	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	0/0:70:69,0:69:2476:0:0:0,-20.7711,-222.734	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/1:32:18,14:18:644:14:504:-36.0651,0,-48.6576	0/1:55:40,15:40:1409:15:540:-32.3772,0,-110.548	0/0:60:60,0:60:2137:0:0:0,-18.0618,-192.596	0/0:88:88,0:88:3141:0:0:0,-26.4906,-282.424	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.965	0/1:29:19,10:19:676:10:356:-23.6481,0,-52.4381	0/1:70:44,26:44:1580:26:928:-62.7112,0,-121.419	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:66:66,0:66:2355:0:0:0,-19.868,-212.208	0/0:25:25,0:25:888:0:0:0,-7.52575,-80.239	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:45:27,18:27:968:18:640:-44.3811,0,-73.891	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.338	0/1:69:44,25:44:1580:25:896:-60.1869,0,-121.72	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:95:95,0:95:3370:0:0:0,-28.5978,-303.515	0/1:59:40,19:40:1394:19:684:-43.0139,0,-107.992	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/1:38:22,16:22:784:16:572:-40.3719,0,-59.4432	0/1:58:32,26:32:1129:26:928:-66.3785,0,-84.4566	0/0:52:52,0:52:1868:0:0:0,-15.6536,-168.399	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:14:5,9:5:180:9:316:-24.5644,0,-12.3376	0/1:35:26,9:26:932:9:324:-18.9698,0,-73.6628	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.775	0/1:41:28,13:28:989:13:464:-29.7553,0,-76.9798	0/1:85:51,34:51:1832:34:1202:-82.7347,0,-139.573	0/0:93:93,0:93:3333:0:0:0,-27.9958,-300.185	0/0:75:75,0:75:2677:0:0:0,-22.5772,-241.174	0/1:33:20,13:20:705:13:468:-32.5079,0,-53.8388	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:38:18,20:18:648:20:701:-51.9726,0,-47.2127	0/0:87:87,0:87:3120:0:0:0,-26.1896,-281.026	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.896	0/1:35:20,15:20:697:15:540:-37.7699,0,-52.5146	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.231	0/1:34:20,14:20:716:14:500:-35.1012,0,-54.5327	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:23:13,10:13:468:10:341:-24.0931,0,-35.536	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:27:11,16:11:392:16:572:-43.6847,0,-27.4922	0/1:24:7,17:7:252:17:612:-48.184,0,-15.8042	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.378	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567
chr12	22451067	.	A	G	24257.2	PASS	AB=0.538899;ABP=37.6426;AC=46;AF=0.244681;AN=188;AO=1434;CIGAR=1X;DP=5199;DPB=5199;DPRA=1.19383;EPP=3108.22;EPPR=8178.6;GTI=2;LEN=1;MEANALT=1;MQM=59.9937;MQMR=59.9849;NS=94;NUMALT=1;ODDS=1.56361;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51060;QR=129734;RO=3765;RPL=1434;RPP=3116.9;RPPR=8178.6;RPR=0;RUN=1;SAF=1433;SAP=3108.22;SAR=1;SRF=3765;SRP=8178.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:13,1:13:438:1:36:0,-0.616145,-36.1413	0/1:72:32,40:32:1088:40:1423:-106.693,0,-76.543	0/1:61:25,36:25:850:36:1292:-98.2209,0,-58.4459	0/0:54:54,0:54:1921:0:0:0,-16.2556,-173.165	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:23:10,13:10:356:13:459:-34.7204,0,-25.4576	0/0:68:68,0:68:2353:0:0:0,-20.47,-211.994	0/1:80:33,47:33:1108:47:1670:-126.503,0,-75.9327	0/1:24:10,14:10:360:14:504:-38.4734,0,-25.5196	0/0:106:106,0:106:3700:0:0:0,-31.9092,-333.203	0/0:60:60,0:60:2001:0:0:0,-18.0618,-180.349	0/1:65:30,35:30:1072:35:1213:-89.9033,0,-77.2255	0/0:37:37,0:37:1259:0:0:0,-11.1381,-113.604	0/0:110:109,1:109:3862:1:36:0,-29.515,-344.15	0/0:30:30,0:30:977:0:0:0,-9.0309,-88.223	0/1:45:18,27:18:629:27:955:-72.7185,0,-43.3871	0/0:80:80,0:80:2736:0:0:0,-24.0824,-246.475	0/0:33:33,0:33:1133:0:0:0,-9.93399,-102.27	0/0:28:28,0:28:951:0:0:0,-8.42884,-85.8933	0/1:84:41,43:41:1366:43:1548:-114.327,0,-97.9366	0/1:112:47,65:47:1661:65:2307:-174.173,0,-116.06	0/0:16:16,0:16:564:0:0:0,-4.81648,-51.0903	0/0:18:18,0:18:588:0:0:0,-5.41854,-53.2246	0/0:44:41,3:41:1400:3:108:0,-3.17015,-116.212	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:120:48,72:48:1603:72:2588:-197.042,0,-108.421	0/0:103:103,0:103:3639:0:0:0,-31.0061,-327.713	0/0:14:14,0:14:481:0:0:0,-4.21442,-43.6151	0/1:62:26,36:26:905:36:1296:-98.2801,0,-63.0989	0/1:101:45,56:45:1559:56:1982:-148.249,0,-110.19	0/1:46:23,23:23:809:23:828:-60.9967,0,-59.2809	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.1407	0/0:11:11,0:11:366:0:0:0,-3.31133,-33.2585	0/1:5:4,1:4:129:1:36:-2.09312,0,-10.4225	0/1:6:2,4:2:72:4:140:-11.1384,0,-5.03054	0/1:130:60,70:60:2083:70:2507:-186.748,0,-148.602	0/1:48:17,31:17:600:31:1104:-85.2212,0,-39.8798	0/0:80:80,0:80:2754:0:0:0,-24.0824,-248.097	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:55:55,0:55:1915:0:0:0,-16.5566,-172.622	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:47:47,0:47:1556:0:0:0,-14.1484,-140.314	0/0:54:53,1:53:1868:1:36:0,-12.6573,-164.801	0/1:51:23,28:23:729:28:996:-74.6018,0,-50.5517	0/1:30:15,15:15:521:15:536:-39.5439,0,-38.1854	0/0:37:37,0:37:1237:0:0:0,-11.1381,-111.619	0/0:44:44,0:44:1515:0:0:0,-13.2453,-136.636	0/0:76:76,0:76:2599:0:0:0,-22.8783,-234.149	0/1:94:39,55:39:1305:55:1932:-145.857,0,-89.4402	0/1:95:37,58:37:1274:58:2046:-155.811,0,-86.3584	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:36:36,0:36:1197:0:0:0,-10.8371,-108.02	0/0:35:35,0:35:1226:0:0:0,-10.536,-110.64	0/1:18:10,8:10:326:8:279:-20.029,0,-24.2357	0/1:71:37,34:37:1294:34:1216:-88.3734,0,-95.3839	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:59:58,1:58:2008:1:36:0,-14.1625,-177.388	0/1:120:58,62:58:2010:62:2220:-163.941,0,-145.047	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:198:198,0:198:6717:0:0:0,-59.6039,-604.616	0/1:130:66,64:66:2280:64:2292:-167.407,0,-166.323	0/0:70:67,3:67:2370:3:108:0,-10.9969,-203.48	0/1:26:16,10:16:572:10:356:-24.5545,0,-43.9866	0/1:68:40,28:40:1397:28:1004:-70.2058,0,-105.555	0/0:74:74,0:74:2501:0:0:0,-22.2762,-225.333	0/0:28:28,0:28:951:0:0:0,-8.42884,-85.8933	0/1:51:30,21:30:1053:21:747:-52.2026,0,-79.726	0/1:73:39,34:39:1293:34:1212:-87.4088,0,-94.6816	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:72:72,0:72:2512:0:0:0,-21.6742,-226.328	0/1:68:26,42:26:879:42:1495:-114.374,0,-58.9448	0/1:126:64,62:64:2265:62:2191:-159.523,0,-166.182	0/0:112:111,1:111:3760:1:36:0,-30.1171,-334.999	0/0:13:13,0:13:438:0:0:0,-3.91339,-39.7396	0/1:63:45,18:45:1544:18:637:-38.6923,0,-120.278	0/1:15:5,10:5:180:10:356:-27.8658,0,-12.0366	0/0:60:60,0:60:2019:0:0:0,-18.0618,-181.972	0/1:36:16,20:16:549:20:699:-52.3948,0,-38.8954	0/0:84:84,0:84:2929:0:0:0,-25.2865,-263.84	0/0:81:81,0:81:2850:0:0:0,-24.3834,-256.737	0/1:54:21,33:21:722:33:1175:-89.8013,0,-49.0394	0/0:59:59,0:59:2010:0:0:0,-17.7608,-181.164	0/0:101:101,0:101:3578:0:0:0,-30.404,-322.227	0/1:29:13,16:13:449:16:572:-43.0836,0,-32.0076	0/0:52:52,0:52:1784:0:0:0,-15.6536,-160.809	0/1:54:27,27:27:930:27:972:-71.5423,0,-67.7526	0/1:60:27,33:27:918:33:1183:-88.7165,0,-64.8648	0/1:138:61,77:61:2123:77:2735:-204.851,0,-149.792	0/1:52:16,36:16:482:36:1277:-99.5775,0,-28.0127	0/0:76:76,0:76:2614:0:0:0,-22.8783,-235.502	0/0:62:62,0:62:2171:0:0:0,-18.6639,-195.652
chr12	22457511	.	TCAAA	ACAAC,TCAAC	198648	PASS	AB=0.488709,0.50581;ABP=8.0612,4.34765;AC=144,44;AF=0.765957,0.234043;AN=188;AO=7054,2319;CIGAR=1X3M1X,4M1X;DP=9428;DPB=9428;DPRA=0,1.23823;EPP=15320.6,5038.65;EPPR=7.35324;GTI=0;LEN=5,1;MEANALT=2.03191,2.5;MQM=59.6683,59.9668;MQMR=60;NS=94;NUMALT=2;ODDS=1.2995;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=248141,82898;QR=65;RO=2;RPL=0,0;RPP=15320.6,5038.65;RPPR=7.35324;RPR=7054,2319;RUN=1,1;SAF=7054,2319;SAP=15320.6,5038.65;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:69:0,69,0:0:0:69,0:2410,0:-217.125,-20.7711,0,-217.125,-20.7711,-217.125	1/2:62:0,27,35:0:0:27,35:928,1252:-177.802,-102.449,-94.3212,-75.7022,0,-65.1661	1/2:238:0,126,110:0:0:126,110:4436,3916:-680.204,-319.156,-281.226,-361.038,0,-327.924	1/1:213:0,209,2:0:0:209,2:7414,68:-666.974,-62.9153,0,-661.458,-57.3895,-660.856	1/2:78:0,42,36:0:0:42,36:1464,1292:-224.743,-105.747,-93.1034,-119.35,0,-108.513	1/2:25:0,19,5:0:0:19,5:657,176:-67.7167,-14.3429,-8.62337,-53.391,0,-51.8858	1/1:54:0,54,0:0:0:54,0:1898,0:-171.094,-16.2556,0,-171.094,-16.2556,-171.094	1/2:160:0,67,91:0:0:67,91:2335,3243:-454.203,-264.349,-244.18,-189.857,0,-162.463	1/2:75:0,37,38:0:0:37,38:1307,1356:-216.894,-110.901,-99.7632,-106.347,0,-94.9078	1/1:71:0,71,0:0:0:71,0:2488,0:-224.173,-21.3731,0,-224.173,-21.3731,-224.173	1/1:57:0,57,0:0:0:57,0:2015,0:-181.564,-17.1587,0,-181.564,-17.1587,-181.564	1/2:82:0,42,40:0:0:42,40:1502,1436:-239.97,-117.496,-104.853,-122.832,0,-110.791	1/1:66:0,64,0:0:0:64,0:2261,0:-203.274,-19.2659,0,-203.274,-19.2659,-203.274	1/1:66:0,65,0:0:0:65,0:2301,0:-206.984,-19.567,0,-206.984,-19.567,-206.984	1/1:57:0,57,0:0:0:57,0:1986,0:-179.01,-17.1587,0,-179.01,-17.1587,-179.01	1/2:58:0,25,33:0:0:25,33:874,1188:-168.387,-97.2946,-89.7689,-71.4461,0,-61.5121	1/1:29:0,29,0:0:0:29,0:1001,0:-90.3848,-8.72987,0,-90.3848,-8.72987,-90.3848	1/1:37:0,37,0:0:0:37,0:1304,0:-117.587,-11.1381,0,-117.587,-11.1381,-117.587	1/1:21:0,21,0:0:0:21,0:749,0:-67.7274,-6.32163,0,-67.7274,-6.32163,-67.7274	1/2:204:0,102,102:0:0:102,102:3591,3651:-590.426,-298.086,-267.381,-292.694,0,-261.989	1/2:166:0,89,77:0:0:89,77:3125,2760:-479.659,-225.462,-198.671,-254.552,0,-231.372	1/1:167:0,166,0:0:0:166,0:5830,0:-524.479,-49.971,0,-524.479,-49.971,-524.479	1/1:121:0,121,0:0:0:121,0:4217,0:-379.718,-36.4246,0,-379.718,-36.4246,-379.718	1/1:75:0,73,2:0:0:73,2:2593,72:-233.247,-21.9752,0,-227.372,-15.7405,-226.77	1/2:79:0,51,28:0:0:51,28:1799,1004:-228.726,-82.247,-66.8945,-146.836,0,-138.407	1/2:223:0,96,125:0:0:96,125:3373,4481:-639.37,-365.473,-336.574,-273.896,0,-236.268	1/1:283:0,282,1:0:0:282,1:9974,36:-897.166,-84.8905,0,-894.228,-81.5932,-893.927	1/1:24:0,24,0:0:0:24,0:856,0:-77.3613,-7.22472,0,-77.3613,-7.22472,-77.3613	1/2:304:0,141,162:0:0:141,162:4972,5795:-877.346,-472.514,-430.069,-404.827,0,-356.06	1/2:152:0,71,81:0:0:71,81:2478,2871:-435.781,-234.24,-212.867,-201.893,0,-177.509	1/2:80:0,39,38:0:0:39,38:1383,1339:-221.69,-109.017,-97.2768,-112.673,0,-101.234	1/2:5:0,3,2:0:0:3,2:102,72:-14.4961,-6.23466,-5.33157,-8.61329,0,-8.01123	1/1:14:0,14,0:0:0:14,0:490,0:-44.423,-4.21442,0,-44.423,-4.21442,-44.423	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:5:0,4,1:0:0:4,1:143,36:-14.9552,-3.29724,-2.09312,-12.0173,0,-11.7163	1/2:7:0,2,5:0:0:2,5:69,180:-20.6482,-15.0469,-14.4449,-5.95048,0,-4.44533	1/2:188:0,100,87:0:0:100,87:3554,3120:-544.092,-254.484,-224.381,-289.625,0,-263.435	1/2:183:0,82,101:0:0:82,101:2880,3598:-528.013,-293.612,-268.927,-234.754,0,-204.35	1/1:32:0,32,0:0:0:32,0:1127,0:-101.737,-9.63296,0,-101.737,-9.63296,-101.737	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:117:0,117,0:0:0:117,0:4111,0:-370.038,-35.2205,0,-370.038,-35.2205,-370.038	1/1:24:0,24,0:0:0:24,0:850,0:-76.8174,-7.22472,0,-76.8174,-7.22472,-76.8174	1/1:212:0,211,0:0:0:211,0:7434,0:-668.658,-63.5173,0,-668.658,-63.5173,-668.658	1/1:52:0,52,0:0:0:52,0:1845,0:-166.304,-15.6536,0,-166.304,-15.6536,-166.304	1/2:60:0,31,29:0:0:31,29:1058,1035:-170.573,-84.734,-75.4021,-86.1885,0,-77.4586	1/2:113:0,55,58:0:0:55,58:1945,2072:-327.705,-169.291,-152.734,-158.769,0,-141.31	1/1:198:0,197,1:0:0:197,1:6915,36:-621.984,-59.3029,0,-619.046,-56.0057,-618.745	1/1:243:0,241,0:0:0:241,0:8387,0:-754.403,-72.5482,0,-754.403,-72.5482,-754.403	1/1:116:0,116,0:0:0:116,0:4095,0:-368.739,-34.9195,0,-368.739,-34.9195,-368.739	1/2:137:0,66,69:0:0:66,69:2326,2472:-390.516,-201.602,-181.734,-188.91,0,-168.138	1/2:129:0,77,52:0:0:77,52:2707,1860:-372.365,-152.026,-128.847,-220.694,0,-205.04	1/1:11:0,11,0:0:0:11,0:393,0:-35.7109,-3.31133,0,-35.7109,-3.31133,-35.7109	1/1:195:0,193,0:0:0:193,0:6829,0:-614.341,-58.0988,0,-614.341,-58.0988,-614.341	1/1:27:0,27,0:0:0:27,0:962,0:-86.8958,-8.12781,0,-86.8958,-8.12781,-86.8958	1/2:7:0,5,2:0:0:5,2:177,72:-20.6441,-6.23466,-4.72951,-14.7675,0,-14.1654	1/2:227:0,114,111:0:0:114,111:3939,3956:-642.158,-322.54,-288.222,-319.689,0,-286.275	1/1:64:0,64,0:0:0:64,0:2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chr12	22457573	.	A	G	13187.4	PASS	AB=0.51728;ABP=17.0436;AC=44;AF=0.236559;AN=186;AO=2820;CIGAR=1X;DP=10636;DPB=10636;DPRA=1.29459;EPP=6126.56;EPPR=16975.2;GTI=4;LEN=1;MEANALT=1;MQM=22.3131;MQMR=57.9788;NS=93;NUMALT=1;ODDS=1.26961;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=98892;QR=277201;RO=7816;RPL=0;RPP=6126.56;RPPR=16975.2;RPR=2820;RUN=1;SAF=0;SAP=6126.56;SAR=2820;SRF=0;SRP=16975.2;SRR=7816;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1788:0:0:0,-15.0515,-160.281	0/1:152:76,76:76:2712:76:2662:-109.142,0,-198.087	0/1:96:47,49:47:1657:49:1716:-71.2988,0,-120.31	0/0:180:180,0:180:6373:0:0:0,-54.1854,-573.547	0/1:89:39,50:39:1389:50:1716:-71.7334,0,-98.3067	0/1:66:35,31:35:1252:31:1076:-43.3674,0,-93.0256	0/0:170:170,0:170:5968:0:0:0,-51.1751,-537.038	0/1:133:90,43:90:3177:43:1544:-48.3558,0,-245.711	0/1:132:64,68:64:2270:68:2398:-99.4516,0,-164.469	0/0:95:95,0:95:3382:0:0:0,-28.5978,-304.298	0/0:78:78,0:78:2800:0:0:0,-23.4803,-252.059	0/1:114:55,59:55:1946:59:2041:-86.2032,0,-140.665	0/0:89:89,0:89:3151:0:0:0,-26.7917,-283.46	0/0:135:135,0:135:4758:0:0:0,-40.639,-427.422	0/0:72:72,0:72:2533:0:0:0,-21.6742,-228.014	0/1:65:31,34:31:1088:34:1212:-47.39,0,-78.6336	0/0:112:111,1:111:3941:1:36:0,-31.4365,-351.882	0/0:65:65,0:65:2306:0:0:0,-19.5669,-207.553	0/0:50:50,0:50:1788:0:0:0,-15.0515,-160.785	0/1:143:61,82:61:2144:82:2915:-118.043,0,-149.641	0/1:136:56,80:56:2000:80:2799:-115.657,0,-139.146	0/0:90:90,0:90:3160:0:0:0,-27.0927,-284.381	0/0:105:105,0:105:3744:0:0:0,-31.6081,-337.098	0/0:151:150,1:150:5330:1:21:0,-43.6079,-477.591	0/1:113:41,72:41:1451:72:2482:-106.952,0,-96.8329	0/1:470:198,272:198:7026:272:9532:-389.91,0,-490.697	0/0:171:171,0:171:6063:0:0:0,-51.4761,-545.004	0/0:43:43,0:43:1532:0:0:0,-12.9443,-137.997	0/1:259:113,146:113:4021:146:5183:-208.413,0,-283.94	0/1:213:103,110:103:3636:110:3903:-152.83,0,-263.139	0/1:160:86,74:86:3009:74:2615:-97.1406,0,-222.777	.:.:.:.:.:.:.:.	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0724	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5401	0/1:4:3,1:3:104:1:36:-1.07475,0,-8.49287	1/1:6:0,6:0:0:6:207:-12.4203,-1.80618,0	0/1:318:169,149:169:5970:149:5215:-196.703,0,-441.462	0/1:235:121,114:121:4303:114:4008:-152.327,0,-316.312	0/0:78:78,0:78:2771:0:0:0,-23.4803,-249.406	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83481	0/0:311:311,0:311:11070:0:0:0,-93.6203,-995.04	0/0:31:31,0:31:1108:0:0:0,-9.33193,-99.8275	0/0:131:131,0:131:4660:0:0:0,-39.4349,-419.232	0/0:96:96,0:96:3423:0:0:0,-28.8989,-308.15	0/1:70:31,39:31:1076:39:1365:-55.3042,0,-76.0687	0/1:129:72,57:72:2564:57:1977:-72.487,0,-192.093	0/0:139:138,1:138:4900:1:36:0,-39.5643,-437.993	0/0:178:177,1:177:6305:1:36:0,-51.4002,-564.873	0/0:145:144,1:144:5134:1:36:0,-41.4662,-459.893	0/1:129:68,61:68:2416:61:2162:-81.0555,0,-178.661	0/1:171:110,61:110:3914:61:2156:-68.1152,0,-299.674	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.2676	0/0:167:167,0:167:5957:0:0:0,-50.272,-535.285	0/0:52:51,1:51:1808:1:36:0,-12.4659,-159.811	0/1:14:4,10:4:144:10:360:-16.5233,0,-8.29458	0/1:77:35,42:35:1256:42:1492:-60.5792,0,-90.1342	0/0:63:62,1:62:2167:1:36:0,-16.7817,-192.274	0/1:9:3,6:3:108:6:207:-9.20472,0,-7.30717	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8032	0/0:121:120,1:120:4207:1:36:0,-34.2415,-376.381	0/1:154:74,80:74:2639:80:2809:-110.53,0,-191.307	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:250:249,1:249:8828:1:36:0,-73.0743,-791.539	0/1:236:127,109:127:4549:109:3824:-142.007,0,-338.285	0/0:104:101,3:101:3585:3:108:0,-25.1943,-316.306	0/1:59:26,33:26:927:33:1154:-46.6692,0,-65.9866	0/1:163:76,87:76:2677:87:3037:-121.572,0,-192.06	0/0:92:92,0:92:3236:0:0:0,-27.6948,-291.46	0/0:39:38,1:38:1332:1:36:0,-9.55702,-117.752	0/1:102:59,43:59:2085:43:1490:-56.9192,0,-157.089	0/1:149:67,82:67:2375:82:2866:-116.554,0,-168.886	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1911	0/0:133:133,0:133:4713:0:0:0,-40.037,-422.519	0/1:109:37,72:37:1311:72:2521:-114.453,0,-85.3244	0/1:176:89,87:89:3175:87:3065:-117.587,0,-232.762	0/0:153:153,0:153:5457:0:0:0,-46.0576,-491.212	0/0:150:150,0:150:5346:0:0:0,-45.1545,-480.288	0/1:144:79,65:79:2822:65:2265:-90.3098,0,-210.671	0/1:7:4,3:4:140:3:100:-4.21739,0,-10.8292	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.438	0/1:69:35,34:35:1239:34:1198:-48.9122,0,-90.9646	0/0:162:162,0:162:5770:0:0:0,-48.7669,-519.097	0/0:139:138,1:138:4870:1:36:0,-39.66,-436.213	0/1:94:45,49:45:1564:49:1703:-68.4648,0,-112.706	0/0:114:114,0:114:4002:0:0:0,-34.3174,-360.179	0/0:231:231,0:231:8163:0:0:0,-69.5379,-734.189	0/1:58:27,31:27:956:31:1099:-46.1823,0,-68.1059	0/0:96:96,0:96:3411:0:0:0,-28.8989,-306.442	0/1:101:52,49:52:1831:49:1674:-69.3229,0,-134.03	0/1:65:19,46:19:676:46:1569:-70.3711,0,-41.4468	0/1:140:57,83:57:2000:83:2917:-121.763,0,-138.081	0/1:88:28,60:28:995:60:2097:-91.0524,0,-63.3284	0/0:132:132,0:132:4698:0:0:0,-39.736,-422.974	0/0:132:131,1:131:4659:1:36:0,-36.1625,-415.193
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chr12	22458557	.	G	A	24171.5	PASS	AB=0.452758;ABP=69.0745;AC=44;AF=0.234043;AN=188;AO=1549;CIGAR=1X;DP=7009;DPB=7009;DPRA=1.07834;EPP=3349.27;EPPR=11813.7;GTI=2;LEN=1;MEANALT=1.02083;MQM=59.9709;MQMR=59.9989;NS=94;NUMALT=1;ODDS=0.539193;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54355;QR=195355;RO=5459;RPL=1;RPP=3357.94;RPPR=11813.7;RPR=1548;RUN=1;SAF=1548;SAP=3357.94;SAR=1;SRF=5459;SRP=11857.1;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:61:30,31:30:1076:31:1071:-78.3305,0,-78.79	0/1:113:66,47:66:2349:47:1628:-112.784,0,-177.651	0/0:226:226,0:226:7994:0:0:0,-68.0328,-719.484	0/1:28:16,12:16:557:12:403:-28.1612,0,-42.0267	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:64:43,21:43:1528:21:744:-48.0184,0,-118.547	0/1:51:32,19:32:1122:19:684:-46.5378,0,-85.9313	0/0:95:95,0:95:3412:0:0:0,-28.5978,-307.293	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:96:50,46:50:1796:46:1628:-117.909,0,-133.023	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/0:70:70,0:70:2516:0:0:0,-21.0721,-226.692	0/1:61:35,26:35:1260:26:932:-65.836,0,-95.3427	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:26:26,0:26:921:0:0:0,-7.82678,-83.2052	0/1:167:94,73:94:3376:73:2570:-181.276,0,-253.783	0/1:113:69,44:69:2464:44:1561:-106.763,0,-187.998	0/0:97:97,0:97:3465:0:0:0,-29.1999,-312.061	0/0:136:136,0:136:4847:0:0:0,-40.9401,-436.381	0/1:72:65,7:65:2325:7:252:-1.3548,0,-187.834	0/1:55:27,28:27:968:28:985:-72.4049,0,-70.8807	0/1:175:104,71:104:3721:71:2503:-172.838,0,-282.409	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.93	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:201:100,101:100:3581:101:3496:-254.338,0,-261.988	0/1:109:73,36:73:2612:36:1239:-78.9932,0,-202.516	0/1:90:55,35:55:1968:35:1226:-83.547,0,-150.302	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:7:7,0:7:237:0:0:0,-2.10721,-21.6591	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:12:8,4:8:288:4:140:-9.33222,0,-22.655	0/1:166:88,78:88:3152:78:2769:-199.48,0,-233.934	0/1:106:58,48:58:2080:48:1701:-121.465,0,-155.561	0/0:47:47,0:47:1679:0:0:0,-14.1484,-151.396	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:133:131,1:131:4678:1:36:0,-36.4975,-417.58	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:118:118,0:118:4233:0:0:0,-35.5215,-381.147	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:69:30,39:30:1076:39:1392:-104.808,0,-76.3818	0/1:45:27,18:27:953:18:614:-42.0306,0,-72.537	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.855	0/0:143:143,0:143:5061:0:0:0,-43.0473,-455.632	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176	0/1:107:47,60:47:1677:60:2133:-160.026,0,-119.005	0/1:66:18,48:18:648:48:1653:-129.181,0,-38.7839	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/1:11:3,8:3:108:8:269:-21.2248,0,-6.76384	0/1:123:69,54:69:2476:54:1861:-130.733,0,-186.067	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.609	0/1:4:3,1:3:104:1:32:-1.99519,0,-8.49869	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:44:43,1:43:1544:1:36:0,-9.64704,-135.655	0/1:71:35,36:35:1252:36:1273:-93.4978,0,-91.6119	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:145:145,0:145:5189:0:0:0,-43.6493,-467.148	0/1:97:48,49:48:1724:49:1668:-121.196,0,-126.245	0/0:44:41,3:41:1468:3:108:0,-3.17015,-122.341	0/1:83:56,27:56:2012:27:972:-62.8124,0,-156.368	0/1:109:56,53:56:2004:53:1849:-133.872,0,-147.821	0/0:126:126,0:126:4484:0:0:0,-37.9298,-403.727	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:51:22,29:22:792:29:1040:-78.5618,0,-56.2531	0/1:38:21,17:21:756:17:604:-43.2515,0,-56.9281	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536	0/1:64:41,23:41:1468:23:798:-52.8682,0,-113.15	0/1:127:95,32:95:3401:32:1080:-59.2657,0,-268.072	0/0:161:161,0:161:5777:0:0:0,-48.4658,-520.041	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/1:65:36,29:36:1292:29:1025:-72.9937,0,-97.0168	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/0:82:81,1:81:2897:1:36:0,-21.0862,-257.366	0/1:131:65,66:65:2332:66:2280:-165.591,0,-170.705	0/0:225:225,0:225:8050:0:0:0,-67.7317,-724.516	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:88:41,47:41:1468:47:1688:-125.716,0,-105.925	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/0:137:137,0:137:4919:0:0:0,-41.2411,-442.858	0/1:24:18,6:18:644:6:186:-9.81886,0,-51.0659	0/0:70:70,0:70:2501:0:0:0,-21.0721,-225.341	0/1:66:29,37:29:1044:37:1324:-99.5941,0,-74.4068	0/1:24:7,17:7:252:17:604:-47.4659,0,-15.8042	0/1:99:48,51:48:1728:51:1824:-134.639,0,-126.003	0/1:91:28,63:28:1008:63:2222:-172.848,0,-63.6426	0/0:93:93,0:93:3329:0:0:0,-27.9958,-299.826	0/0:81:81,0:81:2912:0:0:0,-24.3834,-262.315
chr12	22458677	.	C	T	116143	PASS	AB=0.51217;ABP=7.92552;AC=144;AF=0.765957;AN=188;AO=5561;CIGAR=1X;DP=7433;DPB=7433;DPRA=0;EPP=12078.6;EPPR=4061.49;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9926;MQMR=59.9882;NS=94;NUMALT=1;ODDS=0.202548;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=198328;QR=66619;RO=1869;RPL=5561;RPP=12078.6;RPPR=4061.49;RPR=0;RUN=1;SAF=0;SAP=12078.6;SAR=5561;SRF=0;SRP=4061.49;SRR=1869;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,38:0:0:38:1344:-121.26,-11.4391,0	0/1:73:39,34:39:1392:34:1212:-87.4111,0,-103.604	0/1:136:71,65:71:2514:65:2328:-168.84,0,-185.569	1/1:176:0,176:0:0:176:6286:-565.831,-52.9813,0	0/1:43:16,27:16:564:27:964:-74.1325,0,-38.146	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	1/1:114:1,113:1:36:113:3983:-355.064,-30.7191,0	0/1:76:37,39:37:1316:39:1370:-100.716,0,-95.8635	0/1:110:63,47:63:2228:47:1684:-118.734,0,-167.669	1/1:93:0,93:0:0:93:3324:-299.378,-27.9958,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/1:87:50,37:50:1796:37:1332:-93.9928,0,-135.733	1/1:92:0,92:0:0:92:3304:-297.577,-27.6948,0	1/1:48:0,48:0:0:48:1704:-153.646,-14.4494,0	1/1:57:0,56:0:0:56:1996:-179.554,-16.8577,0	0/1:51:24,27:24:849:27:960:-71.3632,0,-61.3753	1/1:34:0,34:0:0:34:1206:-108.844,-10.235,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:238:103,134:103:3658:134:4791:-359.641,0,-257.719	0/1:155:78,77:78:2773:77:2722:-198.562,0,-203.151	1/1:88:0,88:0:0:88:3138:-282.643,-26.4906,0	1/1:67:0,67:0:0:67:2387:-215.087,-20.169,0	1/1:66:2,64:2:72:64:2304:-200.784,-13.0313,0	0/1:61:33,28:33:1176:28:1008:-72.6735,0,-87.7849	0/1:177:93,84:93:3303:84:2995:-216.498,0,-244.203	1/1:109:0,109:0:0:109:3869:-348.406,-32.8123,0	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:178:70,108:70:2497:108:3853:-293.382,0,-171.342	0/1:120:59,61:59:2097:61:2165:-158.992,0,-152.874	0/1:95:44,51:44:1557:51:1836:-136.923,0,-111.822	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:14:3,11:3:108:11:392:-31.4056,0,-5.86075	0/1:11:4,7:4:140:7:252:-19.7176,0,-9.63325	0/1:228:124,104:124:4452:104:3732:-267.445,0,-332.214	0/1:127:82,45:82:2933:45:1612:-107.139,0,-225.972	1/1:44:0,44:0:0:44:1569:-141.5,-13.2453,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:95:0,95:0:0:95:3388:-305.136,-28.5979,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:86:0,86:0:0:86:3038:-273.649,-25.8886,0	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:54:27,27:27:927:27:968:-71.1817,0,-67.4802	0/1:75:21,54:21:756:54:1944:-152.659,0,-45.7854	1/1:96:0,96:0:0:96:3409:-307.025,-28.8989,0	1/1:199:0,199:0:0:199:7079:-637.17,-59.905,0	1/1:84:0,84:0:0:84:2955:-266.181,-25.2865,0	0/1:76:45,31:45:1620:31:1104:-76.7924,0,-123.212	0/1:127:54,73:54:1944:73:2608:-196.738,0,-137.005	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:77:0,77:0:0:77:2737:-246.572,-23.1793,0	1/1:39:1,38:1:36:38:1353:-118.47,-8.1419,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:100:53,47:53:1864:47:1688:-122.104,0,-137.934	1/1:47:0,47:0:0:47:1686:-152.027,-14.1484,0	0/1:12:2,10:2:68:10:360:-29.1319,0,-2.84535	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:52:0,52:0:0:52:1849:-166.688,-15.6536,0	0/1:82:41,41:41:1463:41:1472:-108.092,0,-107.281	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:182:0,182:0:0:182:6488:-584.007,-54.7875,0	0/1:124:67,57:67:2389:57:2040:-146.544,0,-177.938	1/1:48:2,46:2:72:46:1633:-140.42,-7.61272,0	0/1:58:27,31:27:964:31:1108:-82.5713,0,-69.6171	0/1:223:73,150:73:2600:150:5357:-415.133,0,-167.12	1/1:109:0,109:0:0:109:3889:-350.204,-32.8123,0	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	0/1:73:38,34:38:1360:34:1208:-86.9922,0,-100.667	0/1:39:27,12:27:972:12:428:-27.1186,0,-76.0577	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	1/1:89:0,89:0:0:89:3177:-286.154,-26.7917,0	0/1:66:16,50:16:576:50:1769:-139.623,0,-32.307	0/1:127:70,57:70:2478:57:2048:-146.361,0,-185.04	1/1:178:0,178:0:0:178:6331:-569.881,-53.5833,0	1/1:72:0,72:0:0:72:2561:-230.739,-21.6742,0	0/1:81:40,41:40:1432:41:1445:-105.96,0,-104.794	0/1:16:3,13:3:108:13:468:-37.6423,0,-5.25869	1/1:75:0,75:0:0:75:2665:-240.096,-22.5773,0	0/1:98:39,59:39:1396:59:2093:-159.137,0,-96.4382	1/1:210:0,210:0:0:210:7455:-670.998,-63.2163,0	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	0/1:68:34,34:34:1209:34:1220:-89.6368,0,-88.6441	1/1:55:0,55:0:0:55:1963:-176.945,-16.5567,0	1/1:150:1,149:1:36:149:5341:-477.222,-41.5562,0	0/1:31:12,19:12:428:19:684:-52.5584,0,-29.5269	1/1:75:0,75:0:0:75:2680:-241.445,-22.5773,0	0/1:72:31,41:31:1116:41:1468:-110.742,0,-79.0775	0/1:35:21,14:21:756:14:504:-35.162,0,-57.8312	0/1:76:42,34:42:1512:34:1224:-87.5888,0,-113.496	0/1:99:66,33:66:2356:33:1188:-77.4266,0,-182.497	1/1:140:0,140:0:0:140:4955:-446.088,-42.1442,0	1/1:107:0,107:0:0:107:3838:-345.607,-32.2102,0
chr12	22459027	.	G	T	32655.9	PASS	AB=0.541583;ABP=55.5632;AC=46;AF=0.244681;AN=188;AO=1915;CIGAR=1X;DP=6334;DPB=6334;DPRA=1.25141;EPP=4161.38;EPPR=9587.89;GTI=3;LEN=1;MEANALT=1.01786;MQM=59.9969;MQMR=59.9989;NS=94;NUMALT=1;ODDS=0.739979;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68590;QR=157712;RO=4418;RPL=0;RPP=4161.38;RPPR=9587.89;RPR=1915;RUN=1;SAF=1915;SAP=4161.38;SAR=0;SRF=4418;SRP=9596.58;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/1:101:27,74:27:972:74:2655:-208.791,0,-57.3939	0/1:86:47,39:47:1642:39:1388:-99.3303,0,-122.175	0/0:113:112,1:112:3947:1:36:0,-30.4181,-351.821	0/1:42:16,26:16:576:26:932:-71.5556,0,-39.5317	0/1:75:23,52:23:828:52:1864:-145.462,0,-52.2669	0/0:49:49,0:49:1760:0:0:0,-14.7505,-158.684	0/1:127:62,65:62:2224:65:2312:-170.109,0,-162.193	0/1:51:26,25:26:921:25:900:-65.9685,0,-67.8527	0/0:71:71,0:71:2521:0:0:0,-21.3731,-227.141	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:43:21,22:21:752:22:792:-58.6614,0,-55.062	0/0:63:62,1:62:2228:1:36:0,-15.3666,-197.186	0/0:96:96,0:96:3435:0:0:0,-28.8989,-309.363	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/1:50:26,24:26:928:24:860:-62.6703,0,-68.7868	0/0:69:69,0:69:2452:0:0:0,-20.7711,-220.933	0/0:32:32,0:32:1140:0:0:0,-9.63296,-102.909	0/0:34:34,0:34:1224:0:0:0,-10.235,-110.467	0/1:72:29,43:29:1036:43:1533:-116.587,0,-71.8798	0/1:81:38,43:38:1341:43:1544:-114.87,0,-96.6046	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:32:31,1:31:1104:1:36:0,-6.03468,-96.0724	0/0:61:57,4:57:2033:4:144:0,-5.04921,-169.927	0/1:26:16,10:16:572:10:360:-24.9175,0,-43.9866	0/1:283:135,148:135:4772:148:5316:-393.381,0,-344.445	0/0:106:106,0:106:3808:0:0:0,-31.9092,-342.916	0/0:28:26,2:26:917:2:72:0,-1.59212,-76.0079	0/1:171:76,95:76:2720:95:3400:-254.739,0,-193.567	0/1:192:82,110:82:2936:110:3908:-294.115,0,-206.677	0/1:111:58,53:58:2065:53:1900:-137.864,0,-152.705	0/1:14:11,3:11:373:3:108:-5.86075,0,-29.6808	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:19:9,10:9:324:10:356:-26.6617,0,-23.7863	0/1:158:93,65:93:3340:65:2332:-162.577,0,-253.254	0/1:141:64,77:64:2277:77:2764:-206.556,0,-162.745	0/0:70:70,0:70:2493:0:0:0,-21.0721,-224.622	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:71:71,0:71:2540:0:0:0,-21.3731,-228.851	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/0:76:76,0:76:2705:0:0:0,-22.8783,-243.693	0/0:53:52,1:52:1872:1:36:0,-12.3563,-165.161	0/1:40:22,18:22:788:18:632:-45.1633,0,-59.2036	0/1:48:26,22:26:936:22:784:-56.4345,0,-70.11	0/0:88:86,2:86:3065:2:72:0,-19.6539,-269.241	0/0:114:114,0:114:4043:0:0:0,-34.3174,-364.058	0/0:48:48,0:48:1709:0:0:0,-14.4494,-154.094	0/1:117:46,71:46:1648:71:2544:-193.99,0,-113.388	0/1:107:42,65:42:1500:65:2340:-178.649,0,-103.084	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:103:103,0:103:3677:0:0:0,-31.0061,-331.132	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:19:11,8:11:396:8:288:-20.5478,0,-30.2632	0/1:71:32,39:32:1136:39:1400:-104.926,0,-81.1758	0/0:32:32,0:32:1144:0:0:0,-9.63296,-103.27	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:92:44,48:44:1576:48:1717:-127.12,0,-114.437	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:77:76,1:76:2711:1:36:0,-19.581,-240.635	0/1:149:68,81:68:2433:81:2907:-217.011,0,-174.37	0/0:49:45,3:45:1612:3:108:0,-4.7341,-135.295	0/1:34:13,21:13:468:21:756:-58.1322,0,-32.2246	0/1:135:61,74:61:2192:74:2660:-199.006,0,-156.906	0/0:17:16,1:16:572:1:36:0,-1.51923,-48.2152	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:26:6,20:6:212:20:715:-56.8508,0,-11.598	0/1:67:35,32:35:1256:32:1148:-83.4608,0,-93.1763	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/0:47:47,0:47:1669:0:0:0,-14.1484,-150.495	0/1:34:18,16:18:644:16:572:-41.5784,0,-48.0556	0/1:144:81,63:81:2896:63:2258:-160.13,0,-217.528	0/0:166:166,0:166:5915:0:0:0,-49.971,-532.457	0/0:99:99,0:99:3518:0:0:0,-29.802,-316.828	0/1:105:38,67:38:1351:67:2403:-184.918,0,-90.2814	0/1:18:9,9:9:324:9:324:-24.0873,0,-24.0873	0/0:93:93,0:93:3278:0:0:0,-27.9958,-295.238	0/1:65:30,35:30:1072:35:1247:-92.9671,0,-77.2255	0/0:142:142,0:142:5112:0:0:0,-42.7463,-460.219	0/0:75:75,0:75:2673:0:0:0,-22.5772,-240.814	0/1:46:18,28:18:648:28:1004:-76.8285,0,-44.8045	0/0:62:62,0:62:2201:0:0:0,-18.6639,-198.354	0/0:109:109,0:109:3892:0:0:0,-32.8123,-350.472	0/1:33:12,21:12:432:21:748:-57.7113,0,-29.2872	0/0:81:81,0:81:2908:0:0:0,-24.3834,-261.955	0/1:52:23,29:23:828:29:1040:-78.2608,0,-59.1906	0/1:73:31,42:31:1097:42:1512:-114.399,0,-77.0628	0/1:117:51,66:51:1827:66:2368:-178.158,0,-129.49	0/1:42:16,26:16:576:26:919:-70.3829,0,-39.5317	0/0:26:24,2:24:860:2:72:0,-0.990057,-70.8851	0/0:54:54,0:54:1932:0:0:0,-16.2556,-174.157
chr12	22459156	.	T	C	33039.9	PASS	AB=0.545608;ABP=67.3835;AC=46;AF=0.244681;AN=188;AO=1977;CIGAR=1X;DP=6768;DPB=6768;DPRA=1.70617;EPP=4296.01;EPPR=10404.4;GTI=3;LEN=1;MEANALT=1.01818;MQM=59.8533;MQMR=59.7729;NS=94;NUMALT=1;ODDS=0.872774;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69801;QR=169785;RO=4790;RPL=0;RPP=4296.01;RPPR=10404.4;RPR=1977;RUN=1;SAF=0;SAP=4296.01;SAR=1977;SRF=0;SRP=10404.4;SRR=4790;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:40:22,18:22:767:18:648:-46.6107,0,-57.2724	0/1:106:53,53:53:1896:53:1882:-137.748,0,-139.009	0/0:108:107,1:107:3811:1:36:0,-28.913,-339.589	0/1:82:53,29:53:1879:29:1024:-67.7881,0,-144.704	0/1:22:4,18:4:140:18:631:-50.493,0,-6.32192	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.369	0/1:74:34,40:34:1208:40:1405:-104.47,0,-86.7499	0/1:126:53,73:53:1879:73:2540:-190.92,0,-131.458	0/0:64:64,0:64:2284:0:0:0,-19.2659,-205.821	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2382	0/1:69:35,34:35:1226:34:1162:-84.1072,0,-89.8487	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:27:27,0:27:951:0:0:0,-8.12781,-85.4129	0/0:41:41,0:41:1442:0:0:0,-12.3422,-129.583	0/1:38:20,18:20:704:18:644:-46.5796,0,-52.2454	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:16:16,0:16:553:0:0:0,-4.81648,-50.094	0/0:18:18,0:18:635:0:0:0,-5.41854,-57.4747	0/1:121:59,62:59:2089:62:2212:-162.915,0,-151.625	0/1:81:49,32:49:1730:32:1131:-77.7143,0,-131.6	0/0:70:70,0:70:2471:0:0:0,-21.0721,-222.512	0/0:91:91,0:91:3232:0:0:0,-27.3937,-290.157	0/0:85:78,7:78:2776:7:248:0,-2.92335,-227.41	0/1:114:42,72:42:1450:72:2555:-195.883,0,-96.4727	0/1:198:97,101:97:3449:101:3600:-264.579,0,-250.646	0/0:174:173,1:173:6132:1:36:0,-48.7809,-548.349	0/0:15:15,0:15:519:0:0:0,-4.51545,-47.0367	0/1:254:88,166:88:3113:166:5915:-455.994,0,-203.788	0/1:130:49,81:49:1756:81:2844:-217.012,0,-119.19	0/1:110:45,65:45:1603:65:2271:-171.531,0,-111.268	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.69935	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:13:1,12:1:32:12:417:-34.6609,-0.714077,0	0/1:124:50,74:50:1764:74:2592:-196.192,0,-121.716	0/1:120:66,54:66:2327:54:1912:-136.231,0,-173.077	0/0:25:25,0:25:879:0:0:0,-7.52575,-79.4268	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:56:55,1:55:1952:1:36:0,-13.2594,-171.867	0/0:22:22,0:22:764:0:0:0,-6.62266,-69.0795	0/0:124:123,1:123:4378:1:36:0,-33.7294,-390.277	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.437	0/1:39:18,21:18:640:21:721:-53.4662,0,-46.1891	0/1:121:63,57:63:2256:57:2048:-148.107,0,-166.816	0/0:76:75,1:75:2666:1:36:0,-19.28,-236.481	0/0:170:169,1:169:5956:1:32:0,-47.9758,-532.89	0/0:100:99,1:99:3522:1:36:0,-26.5047,-313.591	0/1:123:46,77:46:1648:77:2720:-207.997,0,-111.581	0/1:147:70,77:70:2496:77:2730:-201.687,0,-180.413	0/0:14:14,0:14:485:0:0:0,-4.21442,-43.9768	0/0:100:100,0:100:3545:0:0:0,-30.103,-319.26	0/0:107:106,1:106:3776:1:27:0,-29.5106,-335.919	0/1:14:5,9:5:176:9:324:-25.2914,0,-11.9706	0/1:120:63,57:63:2252:57:2035:-147.01,0,-166.311	0/0:56:56,0:56:1976:0:0:0,-16.8577,-178.077	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:74:74,0:74:2615:0:0:0,-22.2762,-235.554	0/1:74:40,34:40:1414:34:1192:-85.3062,0,-105.278	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:176:176,0:176:6239:0:0:0,-52.9813,-561.364	0/1:124:64,60:64:2254:60:2094:-151.396,0,-165.794	0/0:26:25,1:25:888:1:36:0,-4.2285,-76.6408	0/1:77:27,50:27:960:50:1773:-136.65,0,-63.5358	0/1:159:58,101:58:2048:101:3550:-271.844,0,-136.723	0/0:96:96,0:96:3376:0:0:0,-28.8989,-304.056	0/0:18:18,0:18:629:0:0:0,-5.41854,-56.8887	0/1:28:16,12:16:561:12:432:-30.7924,0,-42.3883	0/1:26:14,12:14:492:12:428:-31.032,0,-36.7856	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7901	0/0:141:141,0:141:5011:0:0:0,-42.4452,-450.548	0/1:120:42,78:42:1486:78:2775:-213.845,0,-97.9094	0/1:144:61,83:61:2152:83:2910:-218.787,0,-150.597	0/0:111:111,0:111:3939:0:0:0,-33.4143,-354.511	0/0:104:104,0:104:3665:0:0:0,-31.3071,-330.029	0/1:73:34,39:34:1199:39:1373:-101.891,0,-86.2396	0/1:10:3,7:3:104:7:234:-18.3709,0,-6.69251	0/0:82:82,0:82:2921:0:0:0,-24.6845,-263.124	0/1:103:44,59:44:1550:59:2094:-157.723,0,-108.784	0/0:175:174,1:174:6190:1:36:0,-49.0824,-553.523	0/0:33:33,0:33:1160:0:0:0,-9.93399,-104.706	0/1:47:25,22:25:900:22:776:-56.0132,0,-67.1538	0/0:34:34,0:34:1200:0:0:0,-10.235,-107.934	0/0:80:80,0:80:2831:0:0:0,-24.0824,-255.028	0/1:19:8,11:8:280:11:379:-28.721,0,-19.8197	0/0:52:52,0:52:1846:0:0:0,-15.6536,-166.415	0/1:46:27,19:27:950:19:667:-46.5075,0,-71.966	0/1:19:11,8:11:396:8:280:-19.8197,0,-30.2632	0/1:69:42,27:42:1483:27:950:-65.0424,0,-112.993	0/1:42:12,30:12:423:30:1052:-82.3445,0,-25.7618	0/0:93:93,0:93:3302:0:0:0,-27.9958,-297.355	0/0:53:53,0:53:1868:0:0:0,-15.9546,-168.388
chr12	22459178	.	C	T	106526	PASS	AB=0.466176;ABP=39.4408;AC=142;AF=0.755319;AN=188;AO=5098;CIGAR=1X;DP=7085;DPB=7085;DPRA=19.0349;EPP=11038.5;EPPR=4254.97;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.7764;MQMR=59.7986;NS=94;NUMALT=1;ODDS=0.0806539;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=182663;QR=70887;RO=1986;RPL=5094;RPP=11038.5;RPPR=4254.97;RPR=4;RUN=1;SAF=0;SAP=11073.2;SAR=5098;SRF=0;SRP=4315.55;SRR=1986;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:64:0,64:0:0:64:2292:-206.314,-19.2659,0	0/1:43:20,23:20:712:23:820:-61.1424,0,-51.4624	0/1:106:52,54:52:1864:54:1932:-142.247,0,-136.094	1/1:114:1,113:1:36:113:4047:-360.817,-30.7191,0	0/1:85:27,58:27:968:58:2088:-162.602,0,-61.8498	0/1:22:18,4:18:648:4:144:-6.69096,0,-52.0292	1/1:80:0,80:0:0:80:2876:-259.03,-24.0824,0	0/1:77:39,38:39:1392:38:1363:-99.7913,0,-102.382	0/1:129:72,57:72:2555:57:2048:-145.759,0,-190.94	1/1:67:0,67:0:0:67:2400:-216.256,-20.169,0	1/1:24:0,24:0:0:24:860:-77.7148,-7.22472,0	0/1:68:33,35:33:1168:35:1260:-93.213,0,-84.9572	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	1/1:28:0,28:0:0:28:991:-89.4318,-8.42884,0	1/1:43:0,43:0:0:43:1540:-138.402,-12.9443,0	0/1:37:17,20:17:604:20:720:-53.9907,0,-43.5525	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:20:0,20:0:0:20:716:-64.7501,-6.0206,0	0/1:128:64,64:64:2274:64:2266:-165.439,0,-166.366	0/1:79:31,48:31:1116:48:1715:-130.854,0,-76.9703	1/1:74:0,74:0:0:74:2644:-238.118,-22.2762,0	1/1:94:0,94:0:0:94:3355:-301.532,-28.2968,0	1/1:88:7,81:7:252:81:2904:-238.558,-3.46168,0	0/1:116:72,44:72:2546:44:1584:-107.932,0,-194.457	0/1:206:100,106:100:3568:106:3784:-278.687,0,-259.227	1/1:180:0,180:0:0:180:6464:-581.807,-54.1854,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:263:169,94:169:6055:94:3374:-224.597,0,-465.853	0/1:132:82,50:82:2923:50:1800:-122.546,0,-223.554	0/1:111:65,46:65:2324:46:1631:-113.599,0,-175.998	1/1:3:0,3:0:0:3:97:-9.04971,-0.90309,0	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	0/0:13:12,1:12:428:1:36:0,-0.315115,-35.2605	0/1:130:76,54:76:2732:54:1932:-135.022,0,-206.773	0/1:126:57,69:57:2040:69:2468:-183.954,0,-145.906	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	1/1:60:1,59:1:36:59:2102:-185.58,-14.4635,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:134:0,134:0:0:134:4809:-432.57,-40.338,0	1/1:27:0,27:0:0:27:972:-87.7975,-8.12781,0	0/1:41:22,19:22:784:19:684:-49.5481,0,-58.5413	0/1:127:59,68:59:2099:68:2448:-182.339,0,-150.947	1/1:82:1,81:1:36:81:2908:-258.251,-21.0862,0	1/1:184:1,183:1:36:183:6558:-586.609,-51.7912,0	1/1:115:1,114:1:36:114:4096:-365.224,-31.0202,0	0/1:126:76,50:76:2728:50:1796:-123.991,0,-207.786	0/1:152:78,74:78:2792:74:2656:-193.528,0,-205.763	1/1:15:0,15:0:0:15:540:-48.9353,-4.51545,0	1/1:103:0,103:0:0:103:3700:-333.201,-31.0061,0	1/1:113:0,113:0:0:113:4022:-361.085,-34.0164,0	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:125:60,65:60:2139:65:2327:-171.942,0,-154.789	1/1:60:0,60:0:0:60:2135:-192.376,-18.0618,0	0/1:7:3,4:3:108:4:140:-10.8374,0,-7.96796	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:78:0,78:0:0:78:2785:-250.888,-23.4803,0	0/1:74:34,40:34:1216:40:1436:-107.26,0,-87.4703	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:185:0,185:0:0:185:6652:-598.512,-55.6906,0	0/1:124:58,66:58:2063:66:2364:-175.69,0,-148.567	1/1:29:1,28:1:36:28:1008:-87.4381,-5.1316,0	0/1:80:48,31:48:1716:31:1093:-74.5358,0,-130.576	0/1:166:101,65:101:3613:65:2332:-160.167,0,-275.401	1/1:105:0,105:0:0:105:3768:-339.315,-31.6082,0	1/1:19:0,19:0:0:19:684:-61.8453,-5.71957,0	0/1:28:12,16:12:432:16:576:-43.7461,0,-30.7924	0/1:28:12,16:12:428:16:572:-43.3846,0,-30.43	1/1:6:0,6:0:0:6:211:-19.3331,-1.80618,0	1/1:151:0,151:0:0:151:5402:-486.065,-45.4555,0	0/1:125:80,45:80:2860:45:1612:-107.741,0,-219.997	0/1:149:88,61:88:3133:61:2192:-152.692,0,-237.342	1/1:118:0,118:0:0:118:4239:-381.316,-35.5215,0	1/1:113:0,113:0:0:113:4034:-363.217,-34.0164,0	0/1:75:39,36:39:1387:36:1287:-93.5555,0,-102.551	0/1:10:7,3:7:235:3:108:-7.06487,0,-18.4528	1/1:91:0,91:0:0:91:3249:-292.472,-27.3937,0	0/1:103:58,45:58:2064:45:1612:-114.364,0,-154.989	1/1:185:0,185:0:0:185:6624:-596.193,-55.6906,0	1/1:36:0,36:0:0:36:1292:-116.583,-10.8371,0	0/1:47:22,25:22:792:25:894:-66.6128,0,-57.4565	1/1:35:0,35:0:0:35:1251:-112.735,-10.5361,0	1/1:84:0,84:0:0:84:3020:-272.027,-25.2865,0	0/1:19:12,7:12:409:7:252:-17.3094,0,-31.4159	1/1:52:0,52:0:0:52:1868:-168.396,-15.6536,0	0/1:47:18,29:18:640:29:1044:-80.1264,0,-43.7809	0/1:19:8,11:8:284:11:392:-29.9005,0,-20.1838	0/1:74:28,46:28:1004:46:1652:-126.679,0,-68.3996	0/1:43:29,14:29:1040:14:504:-32.7538,0,-80.9697	1/1:108:0,108:0:0:108:3870:-348.492,-32.5112,0	1/1:57:1,56:1:36:56:2016:-178.106,-13.5604,0
chr12	22518711	.	T	A	27815.9	PASS	AB=0.476231;ABP=20.2492;AC=47;AF=0.25;AN=188;AO=1684;CIGAR=1X;DP=6898;DPB=6898;DPRA=1.15912;EPP=3633.76;EPPR=11102.4;GTI=0;LEN=1;MEANALT=1;MQM=59.4062;MQMR=59.9165;NS=94;NUMALT=1;ODDS=4.00221;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=60273;QR=186805;RO=5211;RPL=3;RPP=3633.76;RPPR=11102.4;RPR=1681;RUN=1;SAF=1684;SAP=3659.77;SAR=0;SRF=5211;SRP=11318.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:48,0:48:1724:0:0:0,-14.4494,-155.086	0/1:22:16,6:16:576:6:216:-13.1679,0,-45.5523	0/1:141:63,78:63:2251:78:2785:-208.417,0,-160.407	0/0:101:101,0:101:3620:0:0:0,-30.404,-325.983	0/1:21:17,4:17:608:4:144:-6.99158,0,-48.7304	0/1:38:18,20:18:644:20:720:-53.6696,0,-46.8515	0/0:68:68,0:68:2435:0:0:0,-20.47,-219.404	0/1:114:60,54:60:2156:54:1925:-139.115,0,-159.988	0/1:59:27,32:27:972:32:1152:-86.2118,0,-70.0371	0/0:75:75,0:75:2687:0:0:0,-22.5772,-241.917	0/0:111:111,0:111:3980:0:0:0,-33.4143,-358.39	0/1:110:62,48:62:2215:48:1720:-121.937,0,-166.501	0/0:67:67,0:67:2408:0:0:0,-20.169,-216.948	0/0:107:106,1:106:3803:1:26:0,-29.6124,-339.846	0/0:61:61,0:61:2192:0:0:0,-18.3628,-197.545	0/1:76:37,39:37:1319:39:1396:-103.05,0,-96.1329	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.146	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.524	0/1:83:48,35:48:1728:35:1251:-87.9035,0,-130.82	0/1:147:74,73:74:2660:73:2624:-192.078,0,-195.394	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0817	0/1:18:12,6:12:423:6:216:-14.3696,0,-32.9865	0/1:36:14,22:14:504:22:792:-60.7327,0,-34.861	0/1:182:95,87:95:3416:87:3128:-226.915,0,-252.861	0/0:145:144,0:144:5172:0:0:0,-43.3483,-465.257	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:133:81,52:81:2908:52:1858:-127.431,0,-221.918	0/1:69:41,28:41:1472:28:1004:-69.8413,0,-112.005	0/1:46:23,23:23:816:23:824:-60.6211,0,-59.9143	0/1:10:4,6:4:144:6:207:-15.9566,0,-10.3033	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:41:24,17:24:860:17:600:-41.7086,0,-65.3796	0/1:136:75,61:75:2696:61:2190:-156.413,0,-201.888	0/1:54:23,31:23:828:31:1116:-84.2593,0,-58.5885	0/0:63:63,0:63:2264:0:0:0,-18.9649,-204.022	0/1:5:1,4:1:36:4:144:-11.7201,0,-2.09312	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.228	0/0:43:43,0:43:1530:0:0:0,-12.9443,-137.992	0/0:145:145,0:145:5186:0:0:0,-43.6493,-466.878	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.951	0/1:47:25,22:25:892:22:792:-57.4569,0,-66.4513	0/1:104:48,56:48:1724:56:2008:-149.676,0,-124.138	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.622	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/0:81:81,0:81:2891:0:0:0,-24.3834,-260.426	0/1:126:58,68:58:2088:68:2429:-180.928,0,-150.26	0/1:31:18,13:18:648:13:468:-33.1181,0,-49.3176	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/0:116:116,0:116:4136:0:0:0,-34.9195,-372.423	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/1:15:9,6:9:324:6:216:-15.2751,0,-24.9904	0/1:115:67,48:67:2404:48:1713:-119.825,0,-181.987	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:29:14,15:14:504:15:536:-39.8416,0,-36.9682	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:74:74,0:74:2642:0:0:0,-22.2762,-238.025	0/1:126:67,59:67:2412:59:2108:-152.024,0,-179.4	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.902	0/1:96:52,44:52:1872:44:1565:-112.221,0,-139.86	0/0:88:82,6:82:2944:6:216:0,-6.72175,-245.425	0/1:61:33,28:33:1188:28:1008:-72.6611,0,-88.8658	0/1:148:77,71:77:2755:71:2529:-183.05,0,-203.62	0/0:124:124,0:124:4444:0:0:0,-37.3277,-400.112	0/0:63:62,1:62:2220:1:36:0,-15.3666,-196.466	0/1:44:19,25:19:676:25:898:-67.7689,0,-47.9227	0/1:41:20,21:20:720:21:752:-55.664,0,-52.7865	0/1:30:15,15:15:532:15:532:-39.1735,0,-39.1665	0/0:129:128,1:128:4577:1:36:0,-35.2346,-408.059	0/1:47:21,26:21:752:26:936:-70.3758,0,-53.8578	0/1:101:52,49:52:1872:49:1726:-125.21,0,-138.353	0/0:119:119,0:119:4268:0:0:0,-35.8226,-384.29	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.309	0/1:103:67,36:67:2387:36:1292:-85.5777,0,-183.711	0/1:29:17,12:17:608:12:432:-30.4775,0,-46.3222	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.062	0/1:87:65,22:65:2327:22:792:-45.37,0,-183.482	0/0:142:142,0:142:5087:0:0:0,-42.7463,-457.959	0/0:54:54,0:54:1928:0:0:0,-16.2556,-173.791	0/1:102:44,58:44:1584:58:2084:-157.113,0,-112.146	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:115:114,1:114:4074:1:36:0,-31.0202,-363.247	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.753	0/1:85:44,41:44:1584:41:1468:-106.685,0,-117.262	0/1:90:47,43:47:1692:43:1544:-112.141,0,-125.474	0/1:229:114,115:114:4096:115:4126:-302.42,0,-299.887	0/1:70:24,46:24:860:46:1648:-127.522,0,-56.6435	0/0:122:121,1:121:4336:1:21:0,-34.6259,-388.281	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.193
chr12	22538704	.	G	C	46054.4	PASS	AB=0.756992;ABP=1582.3;AC=55;AF=0.292553;AN=188;AO=2542;CIGAR=1X;DP=4777;DPB=4777;DPRA=1.96808;EPP=5522.89;EPPR=4849.74;GTI=25;LEN=1;MEANALT=1.02;MQM=43.8257;MQMR=59.4243;NS=94;NUMALT=1;ODDS=0.0727353;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=90457;QR=79815;RO=2232;RPL=2542;RPP=5522.89;RPPR=4849.74;RPR=0;RUN=1;SAF=2542;SAP=5522.89;SAR=0;SRF=2232;SRP=4849.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:51:8,43:8:273:43:1540:-121.195,0,-9.49094	1/1:108:7,101:7:237:101:3593:-295.929,-10.8522,0	0/0:88:88,0:88:3159:0:0:0,-26.4906,-284.47	1/1:60:1,57:1:36:57:2026:-175.32,-14.2192,0	0/1:37:10,27:10:360:27:972:-75.3118,0,-21.6062	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.532	0/1:86:10,76:10:356:76:2686:-209.968,0,-6.48708	0/1:46:6,40:6:216:40:1436:-113.479,0,-5.94313	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.323	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.1542	0/1:50:9,41:9:324:41:1459:-113.475,0,-14.4544	0/0:28:28,0:28:995:0:0:0,-8.42884,-89.864	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.5853	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.613	0/1:25:11,14:11:396:14:500:-36.3284,0,-28.457	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.7571	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	1/1:171:15,156:15:536:156:5548:-441.217,-2.95767,0	0/1:144:45,99:45:1594:99:3504:-266.092,0,-100.344	0/0:25:25,0:25:892:0:0:0,-7.52575,-80.5997	0/1:16:13,3:13:468:3:108:-5.08466,0,-37.6432	0/1:32:27,5:27:960:5:176:-6.29954,0,-76.9476	0/1:44:8,36:8:288:36:1284:-100.03,0,-13.0221	0/1:210:38,172:38:1368:172:6128:-477.36,0,-60.0362	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.895	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/1:257:50,207:50:1796:207:7396:-575.715,0,-84.4455	0/1:82:15,67:15:540:67:2399:-187.865,0,-24.2521	0/1:74:16,58:16:576:58:2060:-156.76,0,-29.7861	0/1:13:6,7:6:216:7:252:-18.7178,0,-15.8771	0/0:11:11,0:11:388:0:0:0,-3.31133,-34.7622	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:8:1,7:1:32:7:252:-20.2229,0,-0.791073	0/1:13:3,10:3:108:10:356:-27.9353,0,-6.16178	0/1:79:39,40:39:1396:40:1423:-101.734,0,-102.158	1/1:94:8,86:8:284:86:3054:-242.81,-2.39347,0	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	1/1:2:0,2:0:0:2:72:-6.71863,-0.60206,0	0/0:40:40,0:40:1410:0:0:0,-12.0412,-127.196	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5715	0/1:21:2,19:2:72:19:675:-53.563,0,-0.456048	0/1:71:9,62:9:324:62:2181:-171.96,0,-8.13272	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:54:54,0:54:1919:0:0:0,-16.2556,-172.848	0/0:27:27,0:27:960:0:0:0,-8.12781,-86.7163	0/1:99:28,71:28:996:71:2514:-192.525,0,-60.1529	0/1:134:29,105:29:1044:105:3733:-288.778,0,-53.8245	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.4571	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.2942	0/1:17:10,7:10:360:7:252:-17.5137,0,-27.5702	0/1:92:20,72:20:711:72:2552:-197.38,0,-36.5646	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:13:3,10:3:108:10:360:-27.5374,0,-6.16178	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.7524	0/0:15:15,0:15:527:0:0:0,-4.51545,-47.7602	0/1:65:16,49:16:568:49:1713:-132.049,0,-31.8849	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:196:196,0:196:7028:0:0:0,-59.0019,-631.623	0/1:147:21,126:21:752:126:4489:-352.004,0,-23.7548	0/1:40:33,7:33:1175:7:252:-10.59,0,-94.0158	1/1:59:4,55:4:144:55:1958:-160.307,-4.44715,0	0/1:135:16,119:16:576:119:4246:-333.116,0,-11.4796	0/0:54:53,1:53:1892:1:36:0,-12.7195,-167.022	0/0:20:20,0:20:712:0:0:0,-6.0206,-64.3504	0/1:38:12,26:12:432:26:927:-71.0086,0,-27.7256	0/1:13:3,10:3:104:10:360:-27.9196,0,-5.78942	0/1:27:16,11:16:576:11:392:-26.1765,0,-44.0472	0/0:46:46,0:46:1621:0:0:0,-13.8474,-146.065	0/1:54:22,32:22:792:32:1152:-85.2159,0,-55.3491	0/1:109:12,97:12:432:97:3428:-270.215,0,-6.40893	0/0:120:119,0:119:4263:0:0:0,-35.8226,-383.494	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:79:20,59:20:720:59:2112:-162.638,0,-41.2912	0/1:20:13,7:13:468:7:248:-16.279,0,-36.439	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/1:125:21,104:21:748:104:3711:-289.339,0,-30.0165	0/0:79:79,0:79:2820:0:0:0,-23.7814,-253.641	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.693	0/1:35:11,24:11:396:24:855:-64.767,0,-25.4433	0/0:12:12,0:12:420:0:0:0,-3.61236,-38.0762	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.046	0/1:10:2,8:2:72:8:288:-22.8034,0,-3.76738	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.1743	0/1:36:12,24:12:432:24:847:-63.7539,0,-28.3841	0/1:18:4,14:4:144:14:500:-39.1612,0,-7.83759	0/1:54:13,41:13:468:41:1448:-110.337,0,-26.204	0/1:34:6,28:6:216:28:1004:-78.8875,0,-9.49852	0/0:130:130,0:130:4651:0:0:0,-39.1339,-418.367	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.312
chr12	22602299	.	CCATCACT	CCATCGCT,TGATCGCC	182679	PASS	AB=0.459311,0.531389;ABP=71.0438,43.4972;AC=141,45;AF=0.758065,0.241935;AN=186;AO=6720,2546;CIGAR=5M1X2M,2X3M1X1M1X;DP=9346;DPB=9346;DPRA=0,1.15191;EPP=14249.9,5462.31;EPPR=5.18177;GTI=1;LEN=1,8;MEANALT=2.37634,2.83636;MQM=59.7783,28.7133;MQMR=60;NS=93;NUMALT=2;ODDS=0.16706;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=239751,89381;QR=31;RO=1;RPL=40,8;RPP=14249.9,5462.31;RPPR=5.18177;RPR=6680,2538;RUN=1,1;SAF=6720,2546;SAP=14595.3,5531.58;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,32,2:0:0:32,2:1125,72:-101.294,-9.63296,0,-97.2956,-5.37348,-96.6936	1/2:111:0,44,67:0:0:44,67:1580,2351:-261.244,-132.336,-119.091,-129.224,0,-109.055	1/2:80:0,32,48:0:0:32,48:1140,1688:-187.173,-94.211,-84.5781,-93.2762,0,-78.8268	1/1:142:0,141,0:0:0:141,0:5051,0:-454.368,-42.4452,0,-454.368,-42.4452,-454.368	1/2:56:0,25,30:0:0:25,30:900,1063:-137.455,-63.9856,-56.4599,-73.4313,0,-64.4004	1/2:65:0,35,30:0:0:35,30:1260,1061:-162.366,-59.5008,-48.9647,-103.168,0,-94.137	1/1:106:0,106,0:0:0:106,0:3788,0:-341.114,-31.9092,0,-341.114,-31.9092,-341.114	1/2:170:0,71,95:0:0:71,95:2544,3313:-393.935,-186.469,-165.096,-207.459,0,-178.861	1/2:85:0,57,28:0:0:57,28:2039,982:-221.938,-55.6113,-38.4526,-166.614,0,-158.186	1/1:116:0,115,0:0:0:115,0:4119,0:-370.688,-34.6185,0,-370.688,-34.6185,-370.688	1/1:161:0,160,0:0:0:160,0:5710,0:-513.447,-48.1648,0,-513.447,-48.1648,-513.447	1/2:105:0,44,59:0:0:44,59:1580,2082:-246.148,-117.218,-103.973,-128.913,0,-111.152	1/1:91:0,91,0:0:0:91,0:3260,0:-293.588,-27.3937,0,-293.588,-27.3937,-293.588	1/1:173:0,173,0:0:0:173,0:6169,0:-555.249,-52.0782,0,-555.249,-52.0782,-555.249	1/1:97:0,95,1:0:0:95,1:3408,35:-306.602,-28.5979,0,-304.311,-26.3419,-304.01	1/2:89:0,39,50:0:0:39,50:1382,1744:-218.766,-106.155,-94.4151,-112.928,0,-97.8764	1/1:140:0,138,1:0:0:138,1:4899,35:-440.753,-41.5421,0,-438.761,-39.6014,-438.46	1/1:117:0,116,0:0:0:116,0:4152,0:-373.472,-34.9195,0,-373.472,-34.9195,-373.472	1/1:59:0,59,0:0:0:59,0:2115,0:-190.618,-17.7608,0,-190.618,-17.7608,-190.618	1/2:98:0,37,60:0:0:37,60:1328,2107:-245.044,-136.691,-125.553,-108.4,0,-90.3379	1/2:98:0,44,54:0:0:44,54:1580,1919:-244.606,-115.688,-102.443,-129.237,0,-112.982	1/1:34:0,34,0:0:0:34,0:1220,0:-110.089,-10.235,0,-110.089,-10.235,-110.089	1/1:141:0,139,0:0:0:139,0:4949,0:-445.232,-41.8432,0,-445.232,-41.8432,-445.232	1/1:135:0,122,13:0:0:122,13:4368,450:-392.874,-36.7257,0,-365.622,-9.19847,-361.708	1/2:39:0,13,26:0:0:13,26:464,927:-93.6332,-55.7771,-51.8637,-38.1841,0,-30.3573	1/2:294:0,127,162:0:0:127,162:4543,5640:-752.565,-382.1,-343.869,-370.478,0,-321.711	1/1:156:0,155,0:0:0:155,0:5531,0:-497.53,-46.6597,0,-497.53,-46.6597,-497.53	1/1:60:0,59,0:0:0:59,0:2103,0:-189.169,-17.7608,0,-189.169,-17.7608,-189.169	1/2:175:0,70,105:0:0:70,105:2488,3680:-450.392,-247.651,-226.579,-203.072,0,-171.464	1/2:140:0,65,73:0:0:65,73:2323,2549:-344.836,-155.402,-135.835,-189.392,0,-167.417	1/2:152:0,79,69:0:0:79,69:2812,2425:-384.546,-155.33,-131.549,-229.177,0,-208.406	1/2:4:0,3,1:0:0:3,1:99,36:-10.4804,-2.43517,-1.53208,-8.33288,0,-8.03185	1/1:9:0,9,0:0:0:9,0:324,0:-29.5059,-2.70927,0,-29.5059,-2.70927,-29.5059	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:3:0,2,1:0:0:2,1:68,36:-7.82945,-2.25768,-1.65562,-5.85565,0,-5.55462	.:.:.:.:.:.:.:.	1/2:259:0,109,148:0:0:109,148:3884,5243:-668.163,-351.554,-318.742,-316.63,0,-272.078	1/2:165:0,84,81:0:0:84,81:2978,2826:-415.098,-172.47,-147.183,-242.94,0,-218.556	1/1:112:0,109,0:0:0:109,0:3842,0:-345.676,-32.8123,0,-345.676,-32.8123,-345.676	1/2:3:0,1,2:0:0:1,2:36,72:-7.56288,-4.59672,-4.29569,-3.29724,0,-2.69518	1/1:80:0,80,0:0:0:80,0:2829,0:-254.838,-24.0824,0,-254.838,-24.0824,-254.838	1/1:64:0,64,0:0:0:64,0:2300,0:-207.242,-19.2659,0,-207.242,-19.2659,-207.242	1/1:109:0,109,0:0:0:109,0:3896,0:-350.821,-32.8123,0,-350.821,-32.8123,-350.821	1/1:127:0,125,0:0:0:125,0:4462,0:-401.405,-37.6288,0,-401.405,-37.6288,-401.405	1/2:81:0,49,32:0:0:49,32:1724,1108:-212.633,-72.2517,-57.5012,-140.692,0,-131.059	1/2:94:0,56,37:0:0:56,37:1998,1305:-251.366,-88.4575,-71.5998,-162.872,0,-151.734	1/1:65:0,64,0:0:0:64,0:2296,0:-206.597,-19.2659,0,-206.597,-19.2659,-206.597	1/1:149:0,149,0:0:0:149,0:5297,0:-476.855,-44.8535,0,-476.855,-44.8535,-476.855	1/1:96:0,95,0:0:0:95,0:3408,0:-306.678,-28.5979,0,-306.678,-28.5979,-306.678	1/2:140:0,46,93:0:0:46,93:1640,3259:-345.198,-211.499,-197.651,-133.741,0,-105.746	1/2:127:0,54,70:0:0:54,70:1932,2477:-322.847,-165.279,-149.023,-157.659,0,-136.587	1/1:10:0,9,0:0:0:9,0:324,0:-29.146,-2.70927,0,-29.146,-2.70927,-29.146	1/1:84:0,84,0:0:0:84,0:3012,0:-271.26,-25.2865,0,-271.26,-25.2865,-271.26	1/1:49:0,49,0:0:0:49,0:1764,0:-159.044,-14.7505,0,-159.044,-14.7505,-159.044	1/2:21:0,14,7:0:0:14,7:504,246:-55.3745,-14.197,-9.98254,-41.4673,0,-39.36	1/2:94:0,36,55:0:0:36,55:1287,1914:-221.919,-116.948,-106.111,-104.953,0,-88.3967	1/1:43:0,41,0:0:0:41,0:1472,0:-132.509,-12.3422,0,-132.509,-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chr12	22606636	.	C	T	39774.5	PASS	AB=0.519676;ABP=17.9645;AC=45;AF=0.241935;AN=186;AO=2317;CIGAR=1X;DP=8581;DPB=8581;DPRA=1.16679;EPP=4973.69;EPPR=13253.4;GTI=1;LEN=1;MEANALT=1.04167;MQM=59.9694;MQMR=59.9848;NS=93;NUMALT=1;ODDS=1.93563;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=82718;QR=223638;RO=6261;RPL=7;RPP=4973.69;RPPR=13244.8;RPR=2310;RUN=1;SAF=2317;SAP=5034.31;SAR=0;SRF=6260;SRP=13589.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/1:120:64,56:64:2296:56:1985:-142.799,0,-170.777	0/1:60:32,28:32:1135:28:1004:-72.6141,0,-84.3963	0/0:216:215,1:215:7686:1:36:0,-61.4242,-688.176	0/1:88:42,46:42:1512:46:1641:-121.487,0,-109.884	0/1:81:53,28:53:1900:28:989:-64.9386,0,-146.894	0/0:200:200,0:200:7138:0:0:0,-60.206,-642.479	0/1:132:51,81:51:1817:81:2900:-221.5,0,-124.073	0/1:121:48,73:48:1704:73:2608:-198.539,0,-117.221	0/0:123:123,0:123:4408:0:0:0,-37.0267,-396.892	0/0:58:58,0:58:2076:0:0:0,-17.4597,-187.111	0/1:73:48,25:48:1724:25:896:-58.9852,0,-133.47	0/0:69:69,0:69:2476:0:0:0,-20.7711,-223.093	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:56:56,0:56:1995:0:0:0,-16.8577,-179.822	0/1:34:18,16:18:648:16:576:-41.94,0,-48.4169	0/0:58:58,0:58:2067:0:0:0,-17.4597,-186.3	0/0:64:64,0:64:2296:0:0:0,-19.2659,-206.901	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/1:212:95,116:95:3399:116:4145:-309.504,0,-242.395	0/1:193:82,111:82:2915:111:3964:-298.852,0,-204.487	0/0:95:95,0:95:3379:0:0:0,-28.5978,-304.327	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.349	0/0:45:43,2:43:1540:2:72:0,-6.70963,-132.056	0/1:67:37,29:37:1332:29:1040:-73.8314,0,-100.1	0/1:321:136,185:136:4822:185:6595:-496.998,0,-337.506	0/0:218:218,0:218:7749:0:0:0,-65.6245,-697.445	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/1:308:144,164:144:5143:164:5873:-435.957,0,-370.295	0/1:89:44,45:44:1568:45:1586:-116.235,0,-114.62	0/1:121:67,54:67:2391:54:1924:-137.012,0,-179.022	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:9:5,4:5:180:4:140:-10.2353,0,-13.8428	0/1:209:120,89:120:4287:89:3184:-223.868,0,-323.075	0/1:170:78,92:78:2788:92:3277:-243.974,0,-199.986	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	.:.:.:.:.:.:.:.	0/0:123:123,0:123:4412:0:0:0,-37.0267,-397.251	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:81:81,0:81:2900:0:0:0,-24.3834,-261.236	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/1:46:23,23:23:811:23:824:-60.6359,0,-59.4626	0/1:101:37,64:37:1309:64:2273:-174.425,0,-87.7055	0/0:141:141,0:141:5019:0:0:0,-42.4452,-451.859	0/0:167:167,0:167:5940:0:0:0,-50.272,-534.708	0/0:113:113,0:113:4038:0:0:0,-34.0164,-363.607	0/1:76:35,41:35:1256:41:1453:-108.186,0,-90.467	0/1:165:88,77:88:3144:77:2768:-199.691,0,-233.516	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:65:65,0:65:2319:0:0:0,-19.5669,-208.97	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:19:12,7:12:432:7:252:-17.3094,0,-33.5016	0/1:118:52,66:52:1868:66:2342:-175.515,0,-132.878	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.891	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:66:66,0:66:2364:0:0:0,-19.868,-213.018	0/1:95:56,39:56:2012:39:1400:-97.6837,0,-152.755	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:142:142,0:142:5080:0:0:0,-42.7463,-457.339	0/1:189:88,101:88:3139:101:3632:-270.188,0,-225.841	0/0:50:47,3:47:1684:3:108:0,-4.97633,-141.772	0/1:86:28,58:28:991:58:2084:-161.941,0,-63.6149	0/1:195:89,106:89:3176:106:3774:-281.156,0,-226.808	0/0:86:86,0:86:3076:0:0:0,-25.8886,-277.069	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/1:73:34,39:34:1220:39:1396:-103.964,0,-88.1316	0/1:78:41,37:41:1472:37:1324:-95.9818,0,-109.296	0/1:22:10,12:10:356:12:417:-31.2376,0,-25.7586	0/0:94:94,0:94:3345:0:0:0,-28.2968,-301.267	0/1:44:20,24:20:712:24:864:-64.7309,0,-51.1613	0/1:158:80,78:80:2852:78:2747:-199.905,0,-209.299	0/0:164:164,0:164:5811:0:0:0,-49.3689,-523.105	0/0:74:74,0:74:2648:0:0:0,-22.2762,-238.567	0/1:84:37,47:37:1323:47:1670:-125.299,0,-94.0848	0/1:28:17,11:17:603:11:396:-27.5539,0,-46.1707	0/0:114:114,0:114:4051:0:0:0,-34.3174,-364.78	0/1:129:49,80:49:1756:80:2860:-218.805,0,-119.491	0/0:273:273,0:273:9767:0:0:0,-82.1812,-878.977	0/0:99:99,0:99:3536:0:0:0,-29.802,-318.45	0/1:43:24,19:24:860:19:684:-48.946,0,-64.7775	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457	0/0:148:148,0:148:5300:0:0:0,-44.5524,-477.135	0/1:56:30,26:30:1076:26:932:-67.3412,0,-80.2952	0/0:69:68,0:68:2440:0:0:0,-20.47,-219.495	0/1:62:36,26:36:1296:26:927:-65.0835,0,-98.2352	0/1:19:13,6:13:468:6:216:-14.0709,0,-36.7401	0/1:68:39,29:39:1391:29:1044:-73.8048,0,-105.018	0/1:61:16,45:16:567:45:1608:-126.647,0,-32.9979	0/0:85:85,0:85:3047:0:0:0,-25.5875,-274.459	0/0:115:115,0:115:4104:0:0:0,-34.6184,-369.547
chr12	22606681	.	A	G	155706	PASS	AB=0.470893;ABP=45.6104;AC=142;AF=0.755319;AN=188;AO=7850;CIGAR=1X;DP=10943;DPB=10943;DPRA=0;EPP=17049.1;EPPR=6708.52;GTI=2;LEN=1;MEANALT=1.03191;MQM=59.8845;MQMR=59.9401;NS=94;NUMALT=1;ODDS=1.14581;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272473;QR=109939;RO=3088;RPL=1;RPP=17040.4;RPPR=6708.52;RPR=7849;RUN=1;SAF=1;SAP=17040.4;SAR=7849;SRF=0;SRP=6708.52;SRR=3088;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:33:0,33:0:0:33:1129:-101.91,-9.93399,0	0/1:152:80,72:80:2841:72:2537:-182.825,0,-210.171	0/1:163:90,73:90:3203:73:2546:-180.322,0,-239.426	1/1:295:0,295:0:0:295:10390:-934.513,-88.8039,0	0/1:106:63,43:63:2209:43:1479:-101.476,0,-167.162	0/1:87:48,39:48:1715:39:1378:-98.1276,0,-128.445	1/1:205:0,205:0:0:205:7133:-642.041,-61.7112,0	0/1:145:82,63:82:2888:63:2212:-155.694,0,-216.503	0/1:110:64,46:64:2292:46:1588:-110.089,0,-173.413	1/1:48:0,48:0:0:48:1666:-150.205,-14.4494,0	1/1:118:0,118:0:0:118:4093:-368.56,-35.5215,0	0/1:100:57,43:57:2017:43:1435:-99.3312,0,-151.698	1/1:70:0,70:0:0:70:2398:-216.066,-21.0721,0	1/1:94:2,92:2:72:92:3084:-270.952,-21.4601,0	1/1:65:0,65:0:0:65:2209:-199.068,-19.567,0	0/1:70:39,31:39:1387:31:1054:-74.0899,0,-104.056	1/1:82:0,82:0:0:82:2722:-245.223,-24.6845,0	1/1:80:0,80:0:0:80:2778:-250.26,-24.0824,0	1/1:53:0,53:0:0:53:1825:-164.526,-15.9546,0	0/1:289:145,143:145:5187:143:4949:-358.508,0,-379.913	0/1:177:93,84:93:3320:84:2946:-211.772,0,-245.628	1/1:105:0,105:0:0:105:3689:-332.214,-31.6082,0	1/1:121:1,119:1:36:119:4160:-370.98,-32.8852,0	1/1:131:12,119:12:432:119:4123:-332.036,-0.213733,0	0/1:69:49,20:49:1755:20:707:-43.1835,0,-137.462	0/1:404:196,208:196:6986:208:7275:-533.189,0,-507.055	1/1:232:0,232:0:0:232:8049:-724.143,-69.839,0	1/1:32:0,32:0:0:32:1111:-100.294,-9.63296,0	0/1:527:263,264:263:9429:264:9270:-675.623,0,-689.923	0/1:170:89,81:89:3162:81:2851:-205.653,0,-233.613	0/1:177:92,85:92:3244:85:2895:-207.498,0,-238.9	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:8:0,8:0:0:8:273:-24.9002,-2.40824,0	0/1:10:7,3:7:252:3:108:-7.06487,0,-20.0187	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:203:102,101:102:3638:101:3491:-253.182,0,-266.515	0/1:207:110,97:110:3927:97:3396:-243.272,0,-291.152	1/1:103:0,103:0:0:103:3515:-316.494,-31.0061,0	0/1:5:2,3:2:72:3:99:-7.73143,0,-5.33157	1/1:184:0,184:0:0:184:6412:-577.161,-55.3895,0	1/1:54:0,54:0:0:54:1871:-168.667,-16.2556,0	1/1:143:0,143:0:0:143:4970:-447.448,-43.0473,0	1/1:78:0,78:0:0:78:2709:-244.057,-23.4803,0	0/1:51:27,24:27:918:24:828:-59.4806,0,-67.5713	0/1:102:58,44:58:2066:44:1533:-107.552,0,-155.487	1/1:102:0,102:0:0:102:3597:-323.929,-30.7051,0	1/1:163:0,163:0:0:163:5686:-511.83,-49.0679,0	1/1:119:0,119:0:0:119:4146:-373.326,-35.8226,0	0/1:159:75,84:75:2679:84:2965:-219.217,0,-193.491	0/1:197:95,102:95:3395:102:3538:-259.327,0,-246.462	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:179:0,179:0:0:179:6192:-557.01,-53.8844,0	1/1:59:0,59:0:0:59:2076:-187.109,-17.7608,0	0/1:8:3,5:3:104:5:176:-13.7768,0,-7.29457	0/1:217:126,91:126:4472:91:3138:-216.336,0,-337.3	1/1:26:0,26:0:0:26:917:-82.8258,-7.82678,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:22:0,22:0:0:22:763:-68.9885,-6.62266,0	1/1:140:0,140:0:0:140:4846:-436.281,-42.1442,0	0/1:147:86,61:86:3053:61:2122:-146.995,0,-230.748	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	1/1:212:0,212:0:0:212:7383:-664.532,-63.8184,0	0/1:210:112,98:112:4002:98:3434:-246.054,0,-297.152	1/1:80:3,77:3:104:77:2674:-231.2,-14.3796,0	0/1:101:40,61:40:1388:61:2126:-161.199,0,-94.8074	0/1:90:48,42:48:1713:42:1494:-107.661,0,-127.361	1/1:134:3,131:3:108:131:4570:-401.152,-30.2629,0	1/1:54:1,53:1:36:53:1841:-162.367,-12.6573,0	0/1:105:55,50:55:1963:50:1726:-124.01,0,-145.336	0/1:93:47,46:47:1688:46:1588:-115.209,0,-124.211	0/1:22:7,15:7:248:15:540:-42.3139,0,-16.0415	1/1:143:1,139:1:27:139:4855:-434.351,-39.7335,0	0/1:54:24,30:24:856:30:1033:-77.0192,0,-61.1055	0/1:270:140,130:140:4995:130:4567:-329.885,0,-367.059	1/1:190:0,190:0:0:190:6638:-597.473,-57.1957,0	1/1:93:0,93:0:0:93:3268:-294.342,-27.9958,0	0/1:90:51,39:51:1806:39:1316:-91.6368,0,-135.725	0/1:17:8,9:8:284:9:309:-23.0232,0,-20.7858	1/1:153:0,153:0:0:153:5296:-476.784,-46.0576,0	0/1:164:105,59:105:3732:59:2023:-132.968,0,-286.712	1/1:297:2,295:2:72:295:10250:-915.6,-82.5692,0	1/1:114:0,114:0:0:114:3906:-351.736,-34.3174,0	0/1:68:33,35:33:1175:35:1215:-89.1772,0,-85.5869	1/1:81:0,81:0:0:81:2733:-246.202,-24.3834,0	1/1:126:1,125:1:36:125:4278:-381.565,-34.3315,0	0/1:36:14,22:14:504:22:765:-58.3306,0,-34.861	1/1:69:0,69:0:0:69:2290:-206.339,-20.7711,0	0/1:81:36,45:36:1273:45:1530:-113.601,0,-90.4875	0/1:86:50,36:50:1783:36:1225:-84.6583,0,-134.863	0/1:165:92,73:92:3292:73:2544:-179.525,0,-246.724	0/1:60:42,18:42:1491:18:600:-36.2514,0,-116.422	1/1:122:0,122:0:0:122:4192:-377.457,-36.7257,0	1/1:98:0,98:0:0:98:3361:-302.708,-29.5009,0
chr12	22639567	.	A	G	138384	PASS	AB=0.490823;ABP=6.55747;AC=140;AF=0.744681;AN=188;AO=6475;CIGAR=1X;DP=8965;DPB=8965;DPRA=48.1882;EPP=14063.3;EPPR=5390.43;GTI=5;LEN=1;MEANALT=1.08602;MQM=59.9964;MQMR=60;NS=94;NUMALT=1;ODDS=0.345674;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=227482;QR=88456;RO=2481;RPL=195;RPP=12420.6;RPPR=4973.23;RPR=6280;RUN=1;SAF=195;SAP=12420.6;SAR=6280;SRF=49;SRP=4973.23;SRR=2432;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:147:91,56:91:3251:56:1962:-132.6,0,-248.559	0/1:112:54,58:54:1944:58:2021:-148.443,0,-141.521	1/1:199:0,198:0:0:198:6973:-627.282,-59.6039,0	0/1:74:31,42:31:1112:42:1504:-113.32,0,-78.0564	0/1:94:43,51:43:1544:51:1789:-132.993,0,-110.956	1/1:156:0,156:0:0:156:5480:-493.331,-46.9607,0	0/1:192:120,72:120:4304:72:2502:-167.632,0,-329.738	0/1:124:72,52:72:2568:52:1772:-122.426,0,-194.043	1/1:150:0,150:0:0:150:5308:-477.859,-45.1545,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:42:26,16:26:924:16:548:-36.998,0,-70.8344	1/1:60:0,60:0:0:60:2087:-188.097,-18.0618,0	1/1:49:0,49:0:0:49:1689:-152.291,-14.7505,0	1/1:56:0,56:0:0:56:1944:-175.231,-16.8577,0	0/1:46:29,17:29:1031:17:608:-41.2046,0,-79.2552	1/1:42:1,41:1:36:41:1410:-123.593,-9.04499,0	1/1:62:0,62:0:0:62:2173:-195.836,-18.6639,0	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:189:85,104:85:3040:104:3686:-275.047,0,-216.936	0/1:140:69,71:69:2484:71:2492:-182.386,0,-181.669	1/1:146:0,144:0:0:144:5069:-455.995,-43.3483,0	1/1:123:0,123:0:0:123:4304:-387.535,-37.0267,0	1/1:133:11,121:11:396:121:4259:-347.508,-4.11304,0	0/1:81:34,47:34:1205:47:1683:-127.373,0,-84.3705	0/1:391:213,177:213:7563:177:6205:-440.79,0,-562.951	1/1:174:1,172:1:36:172:6034:-539.574,-48.8397,0	1/1:19:0,19:0:0:19:661:-59.8116,-5.71957,0	0/1:213:107,106:107:3826:106:3765:-274.932,0,-280.416	0/1:166:51,115:51:1797:115:4065:-316.066,0,-112.039	0/1:161:91,69:91:3227:69:2414:-168.99,0,-242.127	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	1/1:6:0,6:0:0:6:207:-18.9669,-1.80618,0	1/1:18:0,18:0:0:18:639:-57.8382,-5.41854,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:3,1:3:108:1:21:-0.895826,0,-8.87105	0/1:165:83,81:83:2972:81:2834:-205.61,0,-218.023	0/1:208:97,111:97:3438:111:3870:-285.881,0,-247.018	1/1:17:0,17:0:0:17:604:-54.6906,-5.11751,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:139:0,139:0:0:139:4929:-443.759,-41.8432,0	1/1:22:0,22:0:0:22:770:-69.6193,-6.62266,0	1/1:142:0,142:0:0:142:4986:-448.893,-42.7463,0	1/1:42:0,42:0:0:42:1470:-132.593,-12.6433,0	0/1:51:36,15:36:1279:15:532:-32.8606,0,-100.06	0/1:159:92,67:92:3254:67:2372:-165.873,0,-245.216	1/1:117:0,117:0:0:117:4141:-372.876,-35.2205,0	1/1:153:0,153:0:0:153:5368:-483.254,-46.0576,0	1/1:115:0,115:0:0:115:4014:-361.453,-34.6185,0	0/1:111:58,53:58:2080:53:1851:-133.45,0,-154.056	0/1:240:114,126:114:4087:126:4422:-325.905,0,-295.767	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:113:0,113:0:0:113:3958:-356.416,-34.0164,0	1/1:44:0,44:0:0:44:1552:-139.969,-13.2453,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:123:60,63:60:2144:63:2221:-163.127,0,-156.201	1/1:31:0,31:0:0:31:1075:-97.0546,-9.33193,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:10:0,10:0:0:10:356:-32.3812,-3.0103,0	1/1:100:0,100:0:0:100:3524:-317.369,-30.103,0	0/1:79:44,35:44:1553:35:1222:-86.5007,0,-116.278	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:277:0,277:0:0:277:9717:-874.492,-83.3853,0	0/1:243:131,112:131:4640:112:3989:-286.05,0,-344.612	0/1:61:6,55:6:216:55:1940:-156.511,0,-1.42768	0/1:74:30,44:30:1061:44:1561:-118.503,0,-73.5231	0/1:190:90,100:90:3219:100:3527:-260.442,0,-232.736	1/1:140:0,140:0:0:140:4948:-445.473,-42.1442,0	0/1:7:1,6:1:36:6:212:-17.3176,0,-1.49106	0/1:75:35,40:35:1252:40:1410:-104.619,0,-90.4078	0/1:94:41,53:41:1445:53:1864:-139.74,0,-102.047	0/1:28:13,15:13:468:15:506:-37.4315,0,-34.0308	1/1:137:0,137:0:0:137:4775:-429.907,-41.2411,0	0/1:57:34,23:34:1215:23:779:-53.2596,0,-92.497	0/1:286:166,120:166:5911:120:4255:-297.036,0,-446.005	1/1:165:0,165:0:0:165:5797:-521.846,-49.67,0	1/1:122:0,122:0:0:122:4336:-390.417,-36.7257,0	0/1:91:50,41:50:1770:41:1460:-104.302,0,-132.188	0/1:5:2,3:2:68:3:108:-8.57002,0,-4.95256	1/1:71:0,71:0:0:71:2480:-223.452,-21.3731,0	0/1:83:39,44:39:1404:44:1519:-112.013,0,-101.674	1/1:200:1,199:1:36:199:6998:-626.288,-56.6077,0	1/1:108:0,108:0:0:108:3793:-341.572,-32.5112,0	0/1:42:26,16:26:928:16:572:-39.1702,0,-71.195	1/1:60:0,60:0:0:60:2080:-187.467,-18.0618,0	1/1:106:0,106:0:0:106:3704:-333.563,-31.9092,0	0/1:28:11,17:11:396:17:595:-45.4478,0,-27.5539	1/1:71:0,71:0:0:71:2455:-221.199,-21.3731,0	0/1:43:20,23:20:712:23:796:-59.0115,0,-51.4624	0/1:10:5,5:5:180:5:180:-13.5418,0,-13.5418	0/1:45:24,21:24:860:21:707:-50.3955,0,-64.1755	0/1:59:32,27:32:1152:27:947:-67.783,0,-86.2294	1/1:97:0,97:0:0:97:3431:-309.004,-29.1999,0	1/1:55:0,55:0:0:55:1936:-174.517,-16.5567,0
chr12	22668006	.	AAT	CAT,CAC	243276	PASS	AB=0.535719,0.461726;ABP=94.0681,107.565;AC=139,47;AF=0.747312,0.252688;AN=186;AO=12702,3826;CIGAR=1X2M,1X1M1X;DP=16563;DPB=16563;DPRA=60.6484,1.07289;EPP=27585.1,8311.06;EPPR=37.7539;GTI=3;LEN=1,3;MEANALT=1.75824,2.16364;MQM=23.8108,30.4239;MQMR=39.25;NS=93;NUMALT=2;ODDS=2.15486;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=301735,133449;QR=511;RO=16;RPL=6562,1802;RPP=33.4547,30.9818;RPPR=7.89611;RPR=6140,2024;RUN=1,1;SAF=6562,1802;SAP=33.4547,30.9818;SAR=6140,2024;SRF=11;SRP=7.89611;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:123:0,123,0:0:0:123,0:2953,0:-232.676,-37.0267,0,-232.676,-37.0267,-232.676	1/2:209:0,133,76:0:0:133,76:3186,2669:-368.137,-157.31,-117.273,-211.07,0,-188.191	1/2:284:0,163,121:0:0:163,121:3921,4217:-481.298,-221.156,-172.088,-260.367,0,-223.943	1/1:384:0,383,1:0:0:383,1:8982,36:-705.399,-115.294,0,-704.712,-114.497,-704.411	1/2:89:0,41,46:0:0:41,46:967,1625:-143.068,-79.462,-67.1198,-63.5878,0,-49.7405	1/2:46:0,27,19:0:0:27,19:658,665:-94.2594,-50.0322,-41.9044,-44.5066,0,-38.787	1/1:190:0,190,0:0:0:190,0:4453,0:-350.077,-57.1957,0,-350.077,-57.1957,-350.077	1/2:278:0,146,130:0:0:146,130:3536,4493:-502.592,-267.609,-223.658,-234.964,0,-195.83	1/2:264:0,174,90:0:0:174,90:4182,3158:-428.741,-151.56,-99.1806,-277.398,0,-250.306	1/1:189:0,187,0:0:0:187,0:4347,0:-340.765,-56.2926,0,-340.765,-56.2926,-340.765	1/1:101:0,101,0:0:0:101,0:2392,0:-188.775,-30.404,0,-188.775,-30.404,-188.775	1/2:190:1,118,71:1:36:118,71:2824,2515:-321.152,-134.254,-101.444,-184.387,0,-165.725	1/1:165:0,165,0:0:0:165,0:3972,0:-311.36,-49.67,0,-311.36,-49.67,-311.36	1/1:150:1,149,0:1:28:149,0:3531,0:-275.288,-42.381,0,-275.589,-44.8535,-277.785	1/1:168:0,168,0:0:0:168,0:3902,0:-306.105,-50.573,0,-306.105,-50.573,-306.105	1/2:107:0,65,42:0:0:65,42:1552,1502:-184.427,-81.3964,-61.8294,-103.264,0,-90.6204	1/1:109:0,109,0:0:0:109,0:2637,0:-208.095,-32.8123,0,-208.095,-32.8123,-208.095	1/1:108:0,108,0:0:0:108,0:2583,0:-203.617,-32.5112,0,-203.617,-32.5112,-203.617	1/1:89:0,89,0:0:0:89,0:2146,0:-169.69,-26.7917,0,-169.69,-26.7917,-169.69	1/2:534:2,268,264:2:72:268,264:6268,9146:-897.079,-486.213,-411.126,-405.758,0,-331.875	1/2:343:0,196,147:0:0:196,147:4651,5123:-589.07,-281.955,-222.954,-307.345,0,-263.093	1/1:111:0,111,0:0:0:111,0:2706,0:-214.027,-33.4143,0,-214.027,-33.4143,-214.027	1/1:164:0,164,0:0:0:164,0:3868,0:-304.316,-49.3689,0,-304.316,-49.3689,-304.316	1/1:192:0,183,9:0:0:183,9:4291,322:-337.434,-55.0885,0,-322.335,-39.7699,-319.626	1/2:170:0,108,62:0:0:108,62:2573,2136:-275.417,-105.538,-73.0268,-170.096,0,-151.432	1/2:448:0,200,247:0:0:200,247:4946,8608:-749.879,-420.567,-360.361,-329.422,0,-255.067	1/1:481:1,480,0:1:21:480,0:11371,0:-892.952,-142.701,0,-893.253,-144.494,-894.837	1/1:82:0,82,0:0:0:82,0:1958,0:-150.317,-24.6845,0,-150.317,-24.6845,-150.317	1/2:386:0,188,198:0:0:188,198:4605,6877:-592.885,-285.68,-229.087,-307.409,0,-247.805	1/2:129:0,75,54:0:0:75,54:1775,1865:-226.207,-109.319,-86.7419,-117.124,0,-100.868	1/2:183:0,100,82:0:0:100,82:2332,2831:-300.624,-147.864,-117.761,-152.78,0,-128.095	2/2:2:0,0,2:0:0:0,2:0,72:-2.0876,-2.0876,-2.0876,-0.60206,-0.60206,0	1/1:24:0,24,0:0:0:24,0:572,0:-45.2056,-7.22472,0,-45.2056,-7.22472,-45.2056	1/1:10:0,10,0:0:0:10,0:239,0:-19.0183,-3.0103,0,-19.0183,-3.0103,-19.0183	1/2:14:0,12,2:0:0:12,2:300,63:-24.0548,-3.92572,-0.313362,-20.3648,0,-19.7627	1/2:17:0,5,12:0:0:5,12:120,414:-21.7076,-13.7486,-12.2435,-8.15409,0,-4.54173	1/2:378:2,155,221:2:56:155,221:3853,7750:-669.668,-411.624,-368.917,-254.67,0,-192.095	1/2:162:2,90,70:2:72:90,70:2123,2462:-296.497,-158.841,-137.366,-132.551,0,-117.098	1/1:111:0,111,0:0:0:111,0:2673,0:-211.334,-33.4143,0,-211.334,-33.4143,-211.334	.:.:.:.:.:.:.:.	1/1:223:0,221,0:0:0:221,0:5261,0:-414.404,-66.5276,0,-414.404,-66.5276,-414.404	1/1:64:0,64,0:0:0:64,0:1506,0:-118.462,-19.2659,0,-118.462,-19.2659,-118.462	1/1:394:0,393,0:0:0:393,0:9322,0:-729.124,-118.305,0,-729.124,-118.305,-729.124	1/1:140:0,140,0:0:0:140,0:3252,0:-255.163,-42.1442,0,-255.163,-42.1442,-255.163	1/2:127:0,67,59:0:0:67,59:1557,2063:-225.409,-123.57,-103.401,-101.866,0,-84.1054	1/2:145:0,56,89:0:0:56,89:1375,3097:-225.061,-133.109,-116.252,-92.1608,0,-65.3691	1/1:223:0,223,0:0:0:223,0:5379,0:-424.797,-67.1297,0,-424.797,-67.1297,-424.797	1/1:286:0,284,2:0:0:284,2:6650,72:-522.179,-85.4925,0,-519.909,-83.0626,-519.307	1/1:185:0,185,0:0:0:185,0:4329,0:-340.02,-55.6906,0,-340.02,-55.6906,-340.02	1/2:312:0,169,143:0:0:169,143:3967,4989:-531.078,-270.414,-219.54,-260.89,0,-217.842	1/2:169:0,74,95:0:0:74,95:1812,3334:-316.21,-195.421,-173.145,-121.024,0,-92.426	1/1:6:0,6,0:0:0:6,0:142,0:-11.3662,-1.80618,0,-11.3662,-1.80618,-11.3662	1/1:283:0,283,0:0:0:283,0:6849,0:-541.29,-85.1915,0,-541.29,-85.1915,-541.29	1/1:55:0,55,0:0:0:55,0:1337,0:-105.684,-16.5567,0,-105.684,-16.5567,-105.684	1/2:10:0,2,8:0:0:2,8:48,277:-25.8895,-22.7388,-22.1367,-3.38763,0,-0.979387	1/2:221:0,131,90:0:0:131,90:3086,3148:-371.726,-168.66,-129.226,-203.292,0,-176.2	1/1:91:0,89,2:0:0:89,2:2089,72:-162.006,-26.7917,0,-156.185,-20.6168,-155.583	2/2:4:0,0,4:0:0:0,4:0,135:-8.98323,-8.98323,-8.98323,-1.20412,-1.20412,0	1/1:4:0,4,0:0:0:4,0:100,0:-8.13873,-1.20412,0,-8.13873,-1.20412,-8.13873	1/1:138:2,136,0:2:72:136,0:3192,0:-244.196,-34.9786,0,-244.798,-40.9401,-250.416	1/2:213:1,111,101:1:28:111,101:2604,3528:-324.565,-153.685,-122.433,-168.951,0,-140.709	1/1:13:0,13,0:0:0:13,0:306,0:-24.2347,-3.91339,0,-24.2347,-3.91339,-24.2347	1/1:236:0,236,0:0:0:236,0:5808,0:-459.465,-71.0431,0,-459.465,-71.0431,-459.465	1/2:336:0,178,155:0:0:178,155:4177,5354:-569.121,-294.546,-240.963,-274.685,0,-228.025	1/1:131:0,128,3:0:0:128,3:3037,108:-238.817,-38.5318,0,-232.298,-31.739,-231.395	1/2:188:0,108,80:0:0:108,80:2521,2774:-314.271,-148.81,-116.299,-165.686,0,-141.603	1/2:283:0,162,120:0:0:162,120:3776,4235:-434.972,-187.521,-138.754,-247.376,0,-211.252	1/1:161:1,157,3:1:34:157,3:3692,108:-286.955,-44.7034,0,-278.525,-38.506,-280.191	1/1:74:0,71,3:0:0:71,3:1711,97:-133.018,-21.3731,0,-125.226,-13.2643,-124.323	1/2:112:0,60,52:0:0:60,52:1432,1831:-207.616,-112.928,-94.8665,-94.9317,0,-79.2781	1/2:153:0,70,83:0:0:70,83:1740,2922:-294.129,-177.328,-156.256,-117.043,0,-92.0576	1/2:39:0,19,20:0:0:19,20:445,687:-61.0767,-31.8794,-26.1599,-29.404,0,-23.3834	1/1:183:0,182,1:0:0:182,1:4406,36:-347.889,-54.7875,0,-344.969,-51.5097,-344.668	1/2:131:0,78,53:0:0:78,53:1872,1850:-213.28,-89.2449,-65.7646,-124.251,0,-108.296	1/2:342:0,198,143:0:0:198,143:4711,5020:-546.545,-235.147,-175.544,-311.252,0,-268.205	1/1:305:1,304,0:1:28:304,0:7093,0:-554.283,-89.0407,0,-554.584,-91.5131,-556.779	1/1:259:0,259,0:0:0:259,0:6239,0:-492.496,-77.9668,0,-492.496,-77.9668,-492.496	1/2:243:0,152,90:0:0:152,90:3670,3117:-409.982,-166.223,-120.466,-243.867,0,-216.774	1/2:9:0,7,2:0:0:7,2:180,72:-18.4825,-6.1976,-4.09039,-12.6144,0,-12.0123	1/1:256:0,255,0:0:0:255,0:6052,0:-476.646,-76.7627,0,-476.646,-76.7627,-476.646	1/2:179:0,107,72:0:0:107,72:2569,2483:-321.746,-151.686,-119.476,-170.305,0,-148.63	1/1:379:1,378,0:1:28:378,0:8897,0:-697.184,-111.324,0,-697.485,-113.789,-699.674	1/1:160:1,158,1:1:36:158,1:3680,33:-285.359,-44.525,0,-284.529,-46.5316,-287.166	1/2:167:0,88,79:0:0:88,79:2069,2751:-289.969,-153.765,-127.274,-136.433,0,-112.651	1/1:190:0,189,1:0:0:189,1:4399,36:-345.003,-56.8947,0,-343.868,-55.5999,-343.567	1/1:287:0,287,0:0:0:287,0:6715,0:-528.177,-86.3956,0,-528.177,-86.3956,-528.177	1/2:67:0,39,28:0:0:39,28:932,993:-131.704,-70.0456,-58.3054,-61.9259,0,-53.4971	1/1:153:0,153,0:0:0:153,0:3685,0:-291.011,-46.0576,0,-291.011,-46.0576,-291.011	1/2:138:0,78,60:0:0:78,60:1871,2104:-230.244,-106.305,-82.8247,-124.16,0,-106.098	1/2:65:0,41,24:0:0:41,24:974,838:-111.679,-47.2377,-34.8955,-64.6761,0,-57.4514	1/2:122:0,66,56:0:0:66,56:1562,1939:-204.091,-101.106,-81.2384,-103.206,0,-86.3484	1/2:215:0,77,138:0:0:77,138:1794,4797:-379.137,-261.549,-238.37,-117.805,0,-76.2633	1/1:252:0,252,0:0:0:252,0:5908,0:-464.765,-75.8596,0,-464.765,-75.8596,-464.765	1/1:258:0,258,0:0:0:258,0:6007,0:-471.285,-77.6657,0,-471.285,-77.6657,-471.285
chr12	22668030	.	GGT	AGC,GGC	146966	PASS	AB=0.412818,0.583073;ABP=404.731,367.761;AC=137,49;AF=0.736559,0.263441;AN=186;AO=6755,3590;CIGAR=1X1M1X,2M1X;DP=10385;DPB=11327.7;DPRA=24.6929,1.41726;EPP=10517,95.9566;EPPR=11.6962;GTI=10;LEN=3,1;MEANALT=1.98889,2.35593;MQM=23.2016,32.2457;MQMR=50.25;NS=93;NUMALT=2;ODDS=11968.4;PAIRED=0,0;PAIREDR=0;PAO=1752,538;PQA=61897,0;PQR=0;PRO=538;QA=237282,127524;QR=144;RO=4;RPL=6591,3521;RPP=13281.4,7210.79;RPPR=11.6962;RPR=164,69;RUN=1,1;SAF=354,1530;SAP=11757.6,172.917;SAR=6401,2060;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31,0:0:0:31,0:1051,0:-64.5683,-9.33193,0,-64.5683,-9.33193,-64.5683	1/2:151:0,74,77:0:0:74,77:2649,2760:-301.417,-166.053,-143.777,-135.39,0,-112.211	1/2:181:0,59,122:0:0:59,122:2075,4324:-336.527,-231.056,-213.295,-105.479,0,-68.7538	1/1:165:0,161,3:0:0:161,3:5648,90:-328.305,-48.4658,0,-323.815,-43.9771,-322.912	1/2:67:0,20,47:0:0:20,47:715,1649:-115.682,-80.7206,-74.7,-34.9531,0,-20.8047	1/2:43:0,19,23:0:0:19,23:669,813:-95.9329,-61.6499,-55.9303,-34.2924,0,-27.3687	1/1:102:0,102,0:0:0:102,0:3615,0:-208.748,-30.7051,0,-208.748,-30.7051,-208.748	1/2:206:0,73,129:0:0:73,129:2531,4613:-408.463,-276.816,-254.84,-131.649,0,-92.8162	1/2:143:0,53,90:0:0:53,90:1859,3212:-252.273,-154.924,-138.969,-97.3496,0,-70.2569	1/1:113:0,112,0:0:0:112,0:3955,0:-226.16,-33.7154,0,-226.16,-33.7154,-226.16	1/1:39:0,38,0:0:0:38,0:1332,0:-76.9242,-11.4391,0,-76.9242,-11.4391,-76.9242	1/2:128:1,56,71:1:36:56,71:1986,2529:-239.797,-138.325,-124.398,-98.807,0,-80.3652	1/1:83:0,82,0:0:0:82,0:2875,0:-173.282,-24.6845,0,-173.282,-24.6845,-173.282	1/1:78:0,78,0:0:0:78,0:2725,0:-159.3,-23.4803,0,-159.3,-23.4803,-159.3	1/1:98:0,98,0:0:0:98,0:3441,0:-198.599,-29.5009,0,-198.599,-29.5009,-198.599	1/2:76:0,33,43:0:0:33,43:1172,1524:-142.792,-84.5095,-74.5755,-58.2837,0,-45.3394	1/1:78:0,77,0:0:0:77,0:2694,0:-162.451,-23.1793,0,-162.451,-23.1793,-162.451	1/1:77:0,77,0:0:0:77,0:2740,0:-162.759,-23.1793,0,-162.759,-23.1793,-162.759	1/1:47:0,46,1:0:0:46,1:1636,36:-97.9951,-13.8474,0,-95.0561,-10.8449,-94.755	1/2:390:0,176,211:0:0:176,211:6181,7483:-765.718,-461.177,-408.196,-304.552,0,-241.034	1/2:244:0,94,149:0:0:94,149:3285,5264:-454.675,-290.307,-262.01,-164.366,0,-119.512	1/1:102:0,102,0:0:0:102,0:3587,0:-208.966,-30.7051,0,-208.966,-30.7051,-208.966	1/1:71:0,71,0:0:0:71,0:2472,0:-146.134,-21.3731,0,-146.134,-21.3731,-146.134	1/1:139:0,129,9:0:0:129,9:4531,308:-264.819,-38.8329,0,-250.416,-24.4361,-247.707	1/2:93:0,31,62:0:0:31,62:1072,2158:-160.438,-107.081,-97.7492,-53.3522,0,-34.6884	1/2:457:0,215,240:0:0:215,240:7567,8500:-793.221,-418.12,-353.399,-375.118,0,-302.87	1/1:198:0,196,0:0:0:196,0:6853,0:-401.343,-59.0019,0,-401.343,-59.0019,-401.343	1/1:52:0,52,0:0:0:52,0:1825,0:-104.169,-15.6536,0,-104.169,-15.6536,-104.169	1/2:369:0,173,194:0:0:173,194:6092,6907:-582.635,-285.077,-232.998,-297.522,0,-239.122	1/2:87:0,32,55:0:0:32,55:1140,1918:-168.913,-112.301,-102.668,-56.6148,0,-40.0582	1/2:132:0,58,73:0:0:58,73:2012,2570:-241.047,-141.788,-124.328,-99.2641,0,-77.289	2/2:1:0,0,1:0:0:0,1:0,36:-1.09874,-1.09874,-1.09874,-0.30103,-0.30103,0	1/1:4:0,4,0:0:0:4,0:144,0:-8.20013,-1.20412,0,-8.20013,-1.20412,-8.20013	1/1:1:0,1,0:0:0:1,0:36,0:-2.15539,-0.30103,0,-2.15539,-0.30103,-2.15539	1/2:4:0,2,2:0:0:2,2:72,64:-7.24523,-3.56595,-2.96389,-3.90765,0,-3.30559	1/2:14:0,2,12:0:0:2,12:72,432:-17.445,-13.7635,-13.1615,-3.90765,0,-0.295287	1/2:393:1,169,223:1:36:169,223:5900,7963:-719.588,-424.731,-376.095,-292.885,0,-227.993	1/2:120:0,51,69:0:0:51,69:1788,2442:-252.505,-164.34,-148.987,-88.1805,0,-67.4095	1/1:55:0,54,1:0:0:54,1:1909,36:-114.662,-16.2556,0,-111.792,-13.3479,-111.491	.:.:.:.:.:.:.:.	1/1:125:0,125,0:0:0:125,0:4393,0:-255.971,-37.6288,0,-255.971,-37.6288,-255.971	1/1:31:0,31,0:0:0:31,0:1109,0:-63.5278,-9.33193,0,-63.5278,-9.33193,-63.5278	1/1:155:0,155,0:0:0:155,0:5415,0:-315.212,-46.6597,0,-315.212,-46.6597,-315.212	1/1:81:0,81,0:0:0:81,0:2876,0:-165.42,-24.3834,0,-165.42,-24.3834,-165.42	1/2:88:0,38,50:0:0:38,50:1365,1753:-186.513,-120.666,-109.227,-65.8687,0,-50.8172	1/2:140:0,52,88:0:0:52,88:1784,3125:-219.228,-136.401,-120.748,-82.7806,0,-56.29	1/1:106:0,105,1:0:0:105,1:3645,36:-221.644,-31.6082,0,-218.706,-28.6492,-218.405	1/1:132:0,131,1:0:0:131,1:4597,36:-264.728,-39.4349,0,-262.566,-37.2725,-262.265	1/1:102:0,101,1:0:0:101,1:3542,36:-204.647,-30.404,0,-202.485,-28.2408,-202.184	1/2:206:0,84,121:0:0:84,121:2979,4288:-402.982,-256.867,-231.581,-146.123,0,-109.699	1/2:177:0,81,96:0:0:81,96:2844,3389:-339.621,-197.133,-172.75,-142.504,0,-113.605	1/1:2:0,2,0:0:0:2,0:69,0:-4.31079,-0.60206,0,-4.31079,-0.60206,-4.31079	1/1:111:0,110,0:0:0:110,0:3900,0:-233.653,-33.1133,0,-233.653,-33.1133,-233.653	1/1:56:0,55,0:0:0:55,0:1908,0:-109.103,-16.5567,0,-109.103,-16.5567,-109.103	2/2:9:0,0,9:0:0:0,9:0,305:-27.6624,-27.6624,-27.6624,-2.70927,-2.70927,0	1/2:142:0,53,89:0:0:53,89:1816,3141:-261.395,-170.346,-154.392,-91.047,0,-64.2553	1/1:39:0,37,2:0:0:37,2:1324,72:-74.9043,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chr12	22691885	.	CGAA	CGAC,TGAC	77262.7	PASS	AB=0.532772,0.46147;ABP=24.0749,32.1261;AC=142,46;AF=0.755319,0.244681;AN=188;AO=3491,1054;CIGAR=3M1X,1X2M1X;DP=4565;DPB=4565.25;DPRA=24.5323,1.28782;EPP=7583.62,2291.74;EPPR=9.52472;GTI=5;LEN=1,4;MEANALT=1.75269,2.23636;MQM=36.1028,25.7087;MQMR=50;NS=94;NUMALT=2;ODDS=0.732392;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=123043,36601;QR=85;RO=3;RPL=0,0;RPP=7583.62,2291.74;RPPR=9.52472;RPR=3491,1054;RUN=1,1;SAF=0,0;SAP=7583.62,2291.74;SAR=3491,1054;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28,0:0:0:28,0:996,0:-82.213,-8.42884,0,-82.213,-8.42884,-82.213	1/2:39:0,24,15:0:0:24,15:860,510:-94.1015,-29.1656,-21.9409,-65.2167,0,-60.7013	1/2:78:0,44,32:0:0:44,32:1551,1125:-179.918,-63.4198,-50.1744,-116.503,0,-106.87	1/1:133:0,133,0:0:0:133,0:4711,0:-387.635,-40.037,0,-387.635,-40.037,-387.635	1/2:24:0,11,13:0:0:11,13:392,463:-54.928,-26.2249,-22.9136,-28.9951,0,-25.0818	1/2:23:0,10,13:0:0:10,13:360,440:-52.7515,-25.6098,-22.5995,-27.4396,0,-23.5262	1/1:32:0,32,0:0:0:32,0:1127,0:-92.7002,-9.63296,0,-92.7002,-9.63296,-92.7002	1/2:46:0,27,19:0:0:27,19:947,652:-107.2,-36.5095,-28.3817,-70.9682,0,-65.2486	1/2:84:0,37,47:0:0:37,47:1303,1605:-188.302,-90.0195,-78.8814,-98.5742,0,-84.4258	1/1:28:0,28,0:0:0:28,0:1000,0:-83.0235,-8.42884,0,-83.0235,-8.42884,-83.0235	1/1:35:0,34,1:0:0:34,1:1204,24:-99.917,-10.235,0,-98.8391,-8.99845,-98.5381	1/2:72:0,40,32:0:0:40,32:1391,1092:-165.289,-61.643,-49.6018,-103.926,0,-94.2932	1/1:48:0,47,1:0:0:47,1:1650,36:-137.281,-14.1484,0,-135.363,-11.9825,-135.062	1/1:32:0,32,0:0:0:32,0:1124,0:-92.0738,-9.63296,0,-92.0738,-9.63296,-92.0738	1/1:32:0,32,0:0:0:32,0:1097,0:-91.6743,-9.63296,0,-91.6743,-9.63296,-91.6743	1/2:30:0,14,16:0:0:14,16:496,558:-69.0071,-32.0603,-27.8459,-37.2396,0,-32.4231	1/1:15:0,15,0:0:0:15,0:502,0:-41.993,-4.51545,0,-41.993,-4.51545,-41.993	1/1:16:0,16,0:0:0:16,0:568,0:-46.4893,-4.81648,0,-46.4893,-4.81648,-46.4893	1/1:12:0,12,0:0:0:12,0:428,0:-36.2319,-3.61236,0,-36.2319,-3.61236,-36.2319	1/2:63:0,35,27:0:0:35,27:1252,928:-143.967,-51.3347,-40.7987,-92.674,0,-84.5462	1/2:90:0,59,31:0:0:59,31:2088,1101:-215.219,-62.1107,-44.3499,-153.387,0,-144.055	1/1:51:0,51,0:0:0:51,0:1798,0:-151.858,-15.3525,0,-151.858,-15.3525,-151.858	1/1:81:0,81,0:0:0:81,0:2900,0:-237.114,-24.3834,0,-237.114,-24.3834,-237.114	1/1:22:0,22,0:0:0:22,0:791,0:-64.8927,-6.62266,0,-64.8927,-6.62266,-64.8927	1/2:39:0,22,17:0:0:22,17:779,591:-91.6402,-34.0109,-27.3882,-57.914,0,-52.7965	1/2:178:1,106,69:1:24:106,69:3730,2424:-420.906,-137.983,-107.932,-281.429,0,-262.515	1/1:138:0,135,2:0:0:135,2:4803,70:-389.576,-40.6391,0,-386.311,-37.3574,-385.709	1/1:19:0,19,0:0:0:19,0:664,0:-54.7988,-5.71957,0,-54.7988,-5.71957,-54.7988	1/2:151:0,93,57:0:0:93,57:3265,2003:-361.484,-114.142,-86.1462,-247.321,0,-230.162	1/2:35:0,24,11:0:0:24,11:841,381:-84.9224,-22.4241,-15.1994,-62.7761,0,-59.4647	1/2:49:0,25,24:0:0:25,24:888,843:-110.838,-45.5594,-38.0337,-65.5614,0,-58.3366	1/2:7:0,2,5:0:0:2,5:72,180:-15.6222,-10.2649,-9.66284,-5.66609,0,-4.16094	1/1:20:0,20,0:0:0:20,0:712,0:-59.3125,-6.0206,0,-59.3125,-6.0206,-59.3125	1/1:4:0,4,0:0:0:4,0:144,0:-12.3807,-1.20412,0,-12.3807,-1.20412,-12.3807	1/2:20:0,8,12:0:0:8,12:284,418:-46.0721,-24.598,-22.1897,-21.7764,0,-18.1641	1/2:12:0,10,2:0:0:10,2:352,72:-29.6817,-4.25948,-1.24918,-25.6881,0,-25.086	1/2:112:0,50,61:0:0:50,61:1760,2144:-255.275,-122.708,-107.657,-132.602,0,-114.239	1/2:65:0,40,25:0:0:40,25:1404,872:-153.986,-49.9895,-37.9483,-104.277,0,-96.7514	1/1:31:0,31,0:0:0:31,0:1067,0:-89.8116,-9.33193,0,-89.8116,-9.33193,-89.8116	1/1:2:0,2,0:0:0:2,0:72,0:-6.31291,-0.60206,0,-6.31291,-0.60206,-6.31291	1/1:64:0,64,0:0:0:64,0:2266,0:-186.046,-19.2659,0,-186.046,-19.2659,-186.046	1/1:20:0,20,0:0:0:20,0:712,0:-56.7571,-6.0206,0,-56.7571,-6.0206,-56.7571	1/1:88:0,88,0:0:0:88,0:3100,0:-257.511,-26.4906,0,-257.511,-26.4906,-257.511	1/1:27:0,27,0:0:0:27,0:951,0:-78.0209,-8.12781,0,-78.0209,-8.12781,-78.0209	1/2:45:0,23,22:0:0:23,22:796,752:-100.948,-41.6246,-34.7009,-59.6032,0,-52.9805	1/2:82:0,32,50:0:0:32,50:1117,1715:-187.363,-102.014,-92.3808,-85.6518,0,-70.6003	1/1:36:0,36,0:0:0:36,0:1266,0:-105.511,-10.8371,0,-105.511,-10.8371,-105.511	1/1:67:0,66,1:0:0:66,1:2336,36:-192.625,-19.868,0,-191.94,-19.0703,-191.639	1/1:30:0,30,0:0:0:30,0:1054,0:-86.7687,-9.0309,0,-86.7687,-9.0309,-86.7687	1/2:42:0,30,12:0:0:30,12:1068,423:-102.64,-23.199,-14.1681,-79.7101,0,-76.0977	1/2:64:0,20,44:0:0:20,44:711,1532:-142.924,-88.5919,-82.5713,-54.6427,0,-41.3974	1/1:3:0,3,0:0:0:3,0:104,0:-9.00908,-0.90309,0,-9.00908,-0.90309,-9.00908	1/1:72:0,72,0:0:0:72,0:2555,0:-214.565,-21.6742,0,-214.565,-21.6742,-214.565	1/1:38:0,37,0:0:0:37,0:1283,0:-108.041,-11.1381,0,-108.041,-11.1381,-108.041	1/2:5:0,2,3:0:0:2,3:72,104:-11.6624,-6.2092,-5.60714,-5.75562,0,-4.85253	1/2:52:0,25,27:0:0:25,27:888,927:-117.459,-52.147,-44.6213,-65.5988,0,-57.471	1/1:50:0,49,1:0:0:49,1:1739,36:-144.166,-14.7505,0,-142.856,-13.2582,-142.555	2/2:2:0,0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chr12	22719145	.	T	A	67688.3	PASS	AB=0.271441;ABP=11774.5;AC=92;AF=0.489362;AN=188;AO=7068;CIGAR=1X;DP=26255;DPB=26255;DPRA=0;EPP=15351;EPPR=41421.9;GTI=30;LEN=1;MEANALT=1.15957;MQM=38.4938;MQMR=58.3928;NS=94;NUMALT=1;ODDS=1.46503;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=251006;QR=682186;RO=19166;RPL=2;RPP=15333.6;RPPR=1841.25;RPR=7066;RUN=1;SAF=2;SAP=15333.6;SAR=7066;SRF=7546;SRP=1883.47;SRR=11620;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:139:95,44:95:3369:44:1548:-87.809,0,-261.584	0/1:407:316,91:316:11168:91:3249:-151.058,0,-880.86	0/1:375:316,59:316:11275:59:2079:-60.7548,0,-900.062	0/1:584:410,173:410:14617:173:6141:-347.456,0,-1139.41	0/1:192:167,25:167:5947:25:872:-17.9949,0,-474.697	0/1:174:144,30:144:5118:30:1076:-38.5455,0,-405.764	0/1:301:183,118:183:6534:118:4207:-265.442,0,-497.534	0/1:446:340,106:340:12110:106:3768:-180.202,0,-952.178	0/1:329:284,45:284:10113:45:1585:-35.1252,0,-805.501	0/1:300:195,105:195:6966:105:3708:-226.508,0,-536.696	0/1:166:126,40:126:4481:40:1419:-68.7119,0,-353.489	0/1:246:211,35:211:7488:35:1248:-30.5665,0,-598.136	0/1:193:144,48:144:5119:48:1701:-85.0109,0,-402.699	0/1:207:149,58:149:5289:58:2067:-112.659,0,-413.836	0/1:181:127,53:127:4524:53:1879:-105.07,0,-352.829	0/1:169:152,17:152:5398:17:612:-2.12366,0,-434.377	0/1:191:125,66:125:4446:66:2363:-140.153,0,-342.816	0/1:181:119,62:119:4202:62:2189:-130.441,0,-323.877	0/1:75:51,23:51:1811:23:820:-46.4822,0,-140.635	0/1:485:420,65:420:14953:65:2324:-52.735,0,-1195	0/1:486:411,75:411:14617:75:2659:-82.1699,0,-1164.69	0/1:253:151,102:151:5371:102:3650:-234.324,0,-407.362	0/1:220:180,40:180:6422:40:1428:-55.8058,0,-511.843	0/1:268:140,128:140:4982:128:4564:-310.943,0,-367.547	0/1:233:195,38:195:6939:38:1334:-43.0974,0,-553.116	0/1:985:789,196:789:28135:196:6918:-297.447,0,-2225.92	0/1:549:381,165:381:13570:165:5873:-332.777,0,-1056.37	0/1:125:89,36:89:3160:36:1292:-72.8839,0,-246.995	0/1:727:616,109:616:21975:109:3853:-114.316,0,-1751.35	0/1:420:292,127:292:10381:127:4519:-259.712,0,-803.044	0/1:372:316,56:316:11266:56:2000:-57.711,0,-897.5	0/1:28:23,5:23:824:5:180:-7.46182,0,-65.9846	0/1:17:10,7:10:360:7:248:-16.7002,0,-27.6268	0/1:16:9,7:9:320:7:248:-15.3687,0,-24.3259	0/1:15:11,4:11:396:4:144:-8.01867,0,-31.3971	0/1:22:17,5:17:597:5:172:-8.43614,0,-47.4335	0/1:574:486,88:486:17243:88:3118:-93.5937,0,-1373.27	0/1:553:417,136:417:14768:136:4814:-244.895,0,-1156.62	0/1:134:87,47:87:3124:47:1670:-100.975,0,-240.978	0/1:7:5,2:5:180:2:72:-3.77395,0,-14.4449	0/1:333:201,132:201:7175:132:4654:-296.984,0,-545.565	0/1:73:46,27:46:1647:27:964:-60.6548,0,-126.543	0/1:485:301,184:301:10737:184:6542:-412.506,0,-820.24	0/1:188:149,39:149:5318:39:1388:-62.8527,0,-422.161	0/1:212:180,32:180:6397:32:1144:-33.9006,0,-510.412	0/1:241:199,42:199:7100:42:1508:-57.3858,0,-563.693	0/1:423:226,197:226:8008:197:6982:-461.057,0,-593.409	0/1:603:310,293:310:11089:293:10439:-707.861,0,-816.38	0/1:278:166,112:166:5931:112:3987:-253.062,0,-450.213	0/1:446:388,58:388:13845:58:2065:-39.9197,0,-1107.81	0/1:341:271,70:271:9595:70:2488:-110.005,0,-757.994	0/1:37:12,25:12:423:25:887:-64.1555,0,-27.267	0/1:344:187,157:187:6669:157:5634:-365.243,0,-496.726	0/1:151:75,76:75:2688:76:2723:-189.472,0,-196.709	0/1:44:14,30:14:500:30:1075:-77.6456,0,-31.6194	0/1:415:336,79:336:11981:79:2822:-115.952,0,-950.269	0/1:147:120,27:120:4266:27:972:-39.1719,0,-339.869	0/1:32:22,10:22:784:10:352:-21.1954,0,-61.1811	0/1:58:37,21:37:1328:21:738:-46.7612,0,-102.362	0/1:241:138,103:138:4878:103:3655:-242.354,0,-366.628	0/1:312:253,58:253:8991:58:2054:-80.306,0,-711.327	0/1:11:9,2:9:309:2:72:-3.19351,0,-24.8294	0/1:511:308,202:308:10965:202:7174:-457.224,0,-832.864	0/1:618:498,118:498:17670:118:4178:-167.297,0,-1398.45	0/1:202:123,79:123:4389:79:2813:-181.068,0,-334.269	0/1:260:231,29:231:8211:29:1028:-9.41233,0,-655.552	0/1:522:439,81:439:15667:81:2899:-91.227,0,-1247.83	0/1:372:232,140:232:8265:140:4959:-309.34,0,-631.838	0/0:96:89,7:89:3172:7:229:0,-9.0892,-265.896	0/1:226:183,43:183:6510:43:1504:-57.052,0,-516.774	0/1:276:213,63:213:7584:63:2230:-107.428,0,-596.382	0/1:48:34,14:34:1203:14:504:-28.2946,0,-94.0558	0/1:357:158,199:158:5646:199:7045:-483.974,0,-400.723	0/1:191:165,26:165:5857:26:927:-20.7112,0,-468.651	0/1:545:408,135:408:14469:135:4773:-244.908,0,-1134.4	0/1:304:218,86:218:7789:86:3080:-170.525,0,-609.527	0/1:441:246,195:246:8763:195:6927:-446.35,0,-655.908	0/1:250:192,58:192:6821:58:2080:-100.333,0,-535.742	0/1:39:30,9:30:1050:9:324:-15.2829,0,-82.5239	0/1:335:158,177:158:5646:177:6272:-436.095,0,-407.346	0/1:340:285,55:285:10155:55:1963:-63.606,0,-808.8	0/1:744:446,298:446:15898:298:10602:-678.717,0,-1206.54	0/1:257:165,92:165:5868:92:3279:-203.48,0,-450.869	0/1:201:174,27:174:6157:27:968:-22.083,0,-492.371	0/1:241:179,62:179:6338:62:2198:-115.968,0,-497.968	0/1:397:278,119:278:9944:119:4193:-235.1,0,-775.389	0/1:105:86,19:86:3080:19:680:-24.8563,0,-244.126	0/1:202:147,55:147:5230:55:1902:-98.0301,0,-410.032	0/0:216:196,19:196:7007:19:676:0,-7.33483,-570.816	0/1:124:106,1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chr12	22719150	.	A	G	106163	PASS	AB=0.339654;ABP=5856.74;AC=93;AF=0.494681;AN=188;AO=8910;CIGAR=1X;DP=26309;DPB=26309;DPRA=0;EPP=19350.8;EPPR=37550.3;GTI=12;LEN=1;MEANALT=1.06383;MQM=39.4456;MQMR=59.9814;NS=94;NUMALT=1;ODDS=3.06897;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=315088;QR=618083;RO=17391;RPL=3;RPP=19324.8;RPPR=664.104;RPR=8907;RUN=1;SAF=3;SAP=19324.8;SAR=8907;SRF=7520;SRP=693.147;SRR=9871;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:144:98,46:98:3473:46:1615:-91.8925,0,-269.434	0/1:418:298,120:298:10629:120:4234:-235.319,0,-830.69	0/1:374:293,81:293:10408:81:2862:-130.056,0,-824.059	0/1:584:409,173:409:14570:173:6139:-345.81,0,-1135.64	0/1:188:121,66:121:4281:66:2355:-149.151,0,-328.819	0/1:176:106,70:106:3766:70:2488:-162.567,0,-286.157	0/1:304:185,119:185:6609:119:4224:-265.414,0,-503.377	0/1:442:288,154:288:10234:154:5421:-328.626,0,-787.937	0/1:324:202,122:202:7203:122:4299:-276.066,0,-550.792	0/1:304:198,105:198:7079:105:3705:-225.21,0,-545.616	0/1:167:125,42:125:4475:42:1475:-74.0699,0,-352.647	0/1:248:188,60:188:6636:60:2085:-104.459,0,-522.671	0/1:191:142,49:142:5063:49:1726:-87.7074,0,-398.32	0/1:208:148,60:148:5268:60:2116:-117.565,0,-411.643	0/1:181:127,54:127:4502:54:1911:-107.56,0,-350.866	0/1:168:139,29:139:4955:29:1044:-40.3584,0,-395.528	0/1:191:125,66:125:4442:66:2323:-137.245,0,-342.454	0/1:181:118,63:118:4219:63:2243:-135.056,0,-325.404	0/1:74:50,24:50:1784:24:856:-49.89,0,-138.567	0/1:485:357,128:357:12709:128:4507:-245.312,0,-997.638	0/1:491:350,141:350:12458:141:4993:-285.887,0,-973.254	0/1:256:155,101:155:5524:101:3576:-227.529,0,-420.225	0/1:220:179,41:179:6381:41:1460:-58.6542,0,-508.154	0/1:266:134,132:134:4716:132:4699:-323.34,0,-344.529	0/1:228:171,57:171:6081:57:2016:-103.882,0,-478.758	0/1:979:663,315:663:23643:315:11133:-669.153,0,-1832.4	0/1:552:385,166:385:13661:166:5838:-329.044,0,-1063.07	0/1:124:89,35:89:3153:35:1244:-70.1894,0,-246.668	0/1:722:515,207:515:18314:207:7330:-421.454,0,-1430.23	0/1:431:227,204:227:8070:204:7261:-496.494,0,-596.576	0/1:376:255,121:255:9030:121:4236:-254.667,0,-699.47	0/1:29:23,6:23:820:6:216:-10.3308,0,-65.3926	0/1:17:10,7:10:352:7:239:-15.991,0,-26.9007	0/1:16:9,7:9:324:7:239:-14.9763,0,-24.6894	0/1:15:10,5:10:352:5:180:-11.1902,0,-27.5027	0/1:22:17,5:17:604:5:180:-8.9603,0,-48.0679	0/1:580:419,161:419:14873:161:5697:-319.671,0,-1163.45	0/1:547:332,215:332:11836:215:7605:-492.851,0,-900.372	0/1:132:85,47:85:3052:47:1669:-101.594,0,-235.103	0/1:8:6,2:6:216:2:72:-3.47292,0,-17.3823	0/1:337:200,135:200:7104:135:4764:-305.603,0,-538.216	0/1:73:47,26:47:1680:26:927:-57.855,0,-129.512	0/1:489:303,186:303:10772:186:6600:-416.582,0,-822.186	0/1:189:148,41:148:5291:41:1460:-68.8719,0,-419.431	0/1:212:157,55:157:5558:55:1869:-98.3647,0,-436.403	0/1:243:160,83:160:5714:83:2943:-183.325,0,-441.172	0/1:418:223,195:223:7941:195:6935:-457.828,0,-588.885	0/1:603:311,292:311:11024:292:10380:-702.966,0,-810.542	0/1:276:164,112:164:5836:112:3968:-252.412,0,-442.27	0/1:441:331,110:331:11747:110:3902:-204.562,0,-924.35	0/1:337:225,112:225:7989:112:3995:-243.973,0,-617.589	0/1:36:12,24:12:413:24:860:-61.8267,0,-26.6607	0/1:347:186,161:186:6615:161:5699:-372.814,0,-490.975	0/1:150:75,75:75:2663:75:2667:-185.596,0,-194.762	0/1:45:11,34:11:388:34:1196:-87.9913,0,-21.7028	0/1:419:296,123:296:10540:123:4353:-250.132,0,-822.389	0/1:141:114,27:114:4060:27:946:-39.1655,0,-323.144	0/1:34:22,12:22:788:12:424:-26.8873,0,-61.0098	0/1:58:37,21:37:1293:21:719:-45.2428,0,-99.209	0/1:242:140,102:140:4975:102:3615:-238.656,0,-375.05	0/1:312:199,113:199:7083:113:4017:-253.864,0,-543.611	0/1:11:9,2:9:320:2:68:-2.90608,0,-25.831	0/1:515:310,205:310:11014:205:7275:-464.407,0,-836.128	0/1:619:408,211:408:14472:211:7467:-452.633,0,-1115.9	0/1:201:121,80:121:4293:80:2829:-182.55,0,-326.042	0/1:264:197,67:197:6998:67:2354:-124.494,0,-549.791	0/1:528:366,162:366:13025:162:5754:-340.451,0,-1013.12	0/1:382:241,141:241:8594:141:4956:-307.076,0,-658.375	0/0:97:90,7:90:3210:7:244:0,-8.42171,-268.344	0/1:219:157,62:157:5548:62:2202:-120.12,0,-433.523	0/1:277:168,109:168:5995:109:3850:-249.492,0,-456.143	0/1:46:31,15:31:1112:15:527:-31.2005,0,-86.544	0/1:364:157,207:157:5559:207:7267:-501.792,0,-390.863	0/1:188:149,39:149:5297:39:1392:-62.6683,0,-420.271	0/1:552:359,193:359:12600:193:6817:-423.957,0,-967.681	0/1:302:215,87:215:7586:87:3095:-172.836,0,-591.874	0/1:446:249,197:249:8828:197:6953:-448.127,0,-660.252	0/1:259:156,103:156:5573:103:3665:-237.554,0,-423.726	0/1:41:23,18:23:820:18:635:-42.2731,0,-61.7803	0/1:335:156,179:156:5559:179:6262:-436.443,0,-399.591	0/1:337:238,99:238:8462:99:3516:-201.752,0,-660.139	0/1:744:447,297:447:15880:297:10481:-670.02,0,-1204.94	0/1:255:163,92:163:5780:92:3270:-203.409,0,-443.554	0/1:201:152,49:152:5398:49:1718:-88.8377,0,-425.445	0/1:243:181,62:181:6451:62:2203:-115.997,0,-507.529	0/1:400:277,123:277:9812:123:4329:-246.131,0,-762.624	0/1:104:62,42:62:2206:42:1477:-95.9626,0,-167.497	0/1:200:143,57:143:5037:57:1995:-107.206,0,-393.275	0/1:217:170,47:170:6045:47:1621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chr12	22719155	.	ACATC	GCATG,ACGTC	147820	PASS	AB=0.329341,0.27042;ABP=5495.02,6387.16;AC=60,41;AF=0.319149,0.218085;AN=188;AO=7150,3771;CIGAR=1X3M1X,2M1X2M;DP=21710;DPB=21883.8;DPRA=0,0;EPP=15529,8087.73;EPPR=19144.8;GTI=10;LEN=5,1;MEANALT=2.98936,3.98113;MQM=38.5103,59.9576;MQMR=59.9886;NS=94;NUMALT=2;ODDS=0.685623;PAIRED=0,0;PAIREDR=0;PAO=845,1.83333;PQA=29626,33.6667;PQR=170.667;PRO=5.83333;QA=250665,133662;QR=313138;RO=8883;RPL=0,894;RPP=15529,2267.36;RPPR=6743.3;RPR=7150,2877;RUN=1,1;SAF=0,882;SAP=15529,2322.5;SAR=7150,2889;SRF=1799;SRP=6830.87;SRR=7084;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:108:62,45,0:62:2179:45,0:1532,0:-97.0562,0,-163.86,-115.72,-177.407,-293.097	0/2:361:131,93,109:131:4604:93,109:3237,3908:-279.32,-73.075,-419.821,0,-129.071,-341.942	0/2:255:69,61,101:69:2446:61,101:2142,3584:-271.249,-130.004,-310.91,0,-37.2636,-168.874	0/1:459:283,175,0:283:9960:175,0:6119,0:-384.096,0,-758.184,-469.287,-810.864,-1280.12	0/2:156:33,25,56:33:1182:25,56:869,1993:-152.499,-95.0352,-183.907,0,-29.0027,-79.542	0/2:150:36,31,44:36:1285:31,44:1091,1567:-116.888,-44.64,-140.069,0,-21.6802,-91.5198	0/1:232:110,119,1:110:3827:119,1:4127,36:-281.946,0,-275.382,-312.121,-308.267,-623.003	1/2:355:83,105,114:83:2938:105,114:3673,4054:-342.796,-91.0611,-298.769,-37.3967,0,-242.402	0/2:261:45,46,88:45:1609:46,88:1584,3093:-238.213,-131.065,-248.416,0,-10.5081,-104.71	0/1:223:116,105,0:116:4093:105,0:3670,0:-247.512,0,-301.75,-282.432,-333.358,-615.731	0/1:132:91,39,0:91:3184:39,0:1361,0:-76.5836,0,-247.39,-103.977,-259.13,-363.036	0/2:151:53,35,35:53:1872:35,35:1211,1241:-85.1545,-9.49896,-151.415,0,-60.8481,-141.924	0/1:142:92,50,0:92:3235:50,0:1764,0:-105.968,0,-248.631,-133.662,-263.682,-397.007	0/1:165:105,59,0:105:3708:59,0:2066,0:-127.073,0,-284.257,-158.682,-302.018,-460.66	0/1:134:79,55,0:79:2792:55,0:1944,0:-124.982,0,-211.183,-148.764,-227.74,-376.162	0/2:109:46,18,33:46:1624:18,33:628,1184:-82.7316,-47.7357,-174.564,0,-83.4053,-122.315	0/1:152:86,64,0:86:3044:64,0:2229,0:-143.589,0,-228.78,-169.478,-248.046,-417.443	0/1:160:96,63,0:96:3379:63,0:2222,0:-140.067,0,-256.161,-168.966,-275.126,-444.055	0/1:59:35,24,0:35:1227:24,0:849,0:-54.0075,0,-92.9715,-64.5435,-100.196,-164.401	0/2:383:113,65,138:113:4009:65,138:2311,4873:-362.819,-218.849,-525.916,0,-148.651,-285.095	0/2:362:90,74,128:90:3196:74,128:2601,4546:-343.332,-168.587,-406.729,0,-58.5835,-221.889	0/1:255:150,103,0:150:5276:103,0:3600,0:-231.816,0,-398.472,-276.971,-429.479,-706.462	0/1:157:116,39,0:116:4051:39,0:1378,0:-71.6942,0,-317.799,-106.614,-329.54,-436.14	0/1:227:84,128,9:84:2966:128,9:4472,324:-321.302,0,-203.007,-320.15,-215.102,-558.983	0/2:163:45,38,59:45:1593:38,59:1332,2111:-158.6,-70.9897,-189.31,0,-28.6073,-112.003	0/2:969:328,195,322:328:11599:195,322:6866,11419:-831.581,-398.826,-1284.78,0,-413.167,-847.729	0/1:415:246,169,0:246:8666:169,0:5921,0:-378.302,0,-654.661,-452.356,-705.535,-1157.91	0/1:90:53,35,0:53:1877:35,0:1243,0:-80.5376,0,-142.429,-96.4922,-152.965,-249.403	0/2:721:274,112,238:274:9669:112,238:3904,8443:-605.148,-383.135,-1136.72,0,-482.812,-715.663	0/1:370:99,127,67:99:3433:127,67:4489,2378:-316.198,0,-240.807,-152.244,-85.2824,-411.115	0/2:305:95,57,90:95:3341:57,90:2001,3184:-230.744,-105.662,-360.464,0,-118.284,-244.871	0/1:19:10,5,3:10:346:5,3:180,108:-11.0268,0,-26.606,-5.2235,-19.2977,-32.4337	0/1:14:7,7,0:7:252:7,0:249,0:-17.6919,0,-18.8145,-19.7991,-20.9217,-40.3698	0/1:16:9,6,0:9:317:6,0:212,0:-12.2291,0,-24.0871,-14.9384,-25.8932,-40.7747	0/1:13:5,4,3:5:179:4,3:144,108:-9.47652,0,-13.3933,-2.16252,-5.78414,-15.865	1/2:13:1,5,7:1:36:5,7:180,248:-30.6914,-17.2597,-18.6927,-10.7806,0,-11.6143	0/2:564:189,87,212:189:6601:87,212:3062,7451:-549.394,-370.46,-881.213,0,-301.119,-473.129	1/2:484:119,139,137:119:4199:139,137:4880,4875:-395.37,-55.4582,-355.467,-33.8784,0,-334.493	0/1:104:56,47,0:56:1963:47,0:1657,0:-109.976,0,-145.614,-126.834,-159.762,-286.513	0/1:5:3,2,0:3:104:2,0:70,0:-3.96908,0,-7.85512,-4.87217,-8.45718,-13.3357	0/1:287:147,138,1:147:5177:138,1:4846,36:-328.443,0,-379.925,-369.756,-418.53,-790.94	0/1:50:23,26,0:23:814:26,0:914,0:-63.4963,0,-58.4853,-70.42,-66.3121,-136.733	0/1:427:238,185,2:238:8389:185,2:6498,72:-428.603,0,-627.338,-494.373,-677.154,-1176.81	0/1:138:97,40,0:97:3417:40,0:1417,0:-80.5109,0,-266.146,-109.711,-278.187,-387.915	0/2:165:59,33,49:59:2085:33,49:1149,1724:-122.455,-51.8772,-211.75,0,-81.4722,-155.061	0/2:244:64,44,93:64:2244:44,93:1545,3244:-244.517,-143.717,-313.078,0,-62.544,-154.613	0/1:385:184,196,3:184:6489:196,3:6900,108:-467.856,0,-469.37,-514.432,-519.559,-1041.9	0/1:484:189,295,0:189:6619:295,0:10405,0:-743.208,0,-450.103,-800.103,-538.907,-1338.67	0/1:234:122,110,0:122:4313:110,0:3868,0:-257.78,0,-318.171,-294.506,-351.284,-645.791	0/2:344:104,56,126:104:3681:56,126:1980,4454:-331.447,-211.623,-494.6,0,-148.707,-261.909	0/2:334:84,69,136:84:2917:69,136:2400,4837:-368.912,-208.777,-425.138,0,-51.7154,-196.197	0/1:35:10,25,0:10:353:25,0:877,0:-64.1209,0,-21.5725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chr12	22719169	.	T	C	94168.4	PASS	AB=0.376435;ABP=2509.63;AC=94;AF=0.5;AN=188;AO=7115;CIGAR=1X;DP=18901;DPB=18901;DPRA=0;EPP=15013.2;EPPR=24912.1;GTI=0;LEN=1;MEANALT=1.05319;MQM=38.5687;MQMR=57.3313;NS=94;NUMALT=1;ODDS=75.6256;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=254497;QR=420480;RO=11781;RPL=7064;RPP=15013.2;RPPR=24912.1;RPR=51;RUN=1;SAF=0;SAP=15453;SAR=7115;SRF=0;SRP=25585.1;SRR=11781;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:102:57,45:57:2048:45:1597:-102.697,0,-153.887	0/1:333:243,90:243:8678:90:3224:-170.196,0,-678.899	0/1:223:161,62:161:5709:62:2228:-118.749,0,-445.202	0/1:386:211,175:211:7541:175:6252:-414.741,0,-562.533	0/1:152:127,25:127:4564:25:898:-31.5749,0,-362.173	0/1:137:106,31:106:3785:31:1116:-52.783,0,-297.055	0/1:207:86,120:86:3047:120:4298:-301.12,0,-212.238	0/1:331:225,106:225:8022:106:3763:-213.96,0,-618.773	0/1:248:204,44:204:7298:44:1580:-58.7474,0,-576.529	0/1:204:103,101:103:3655:101:3617:-247.284,0,-267.741	0/1:93:51,42:51:1798:42:1497:-97.9005,0,-134.102	0/1:124:89,35:89:3196:35:1252:-67.5494,0,-248.756	0/1:112:63,49:63:2260:49:1741:-112.831,0,-169.947	0/1:145:85,60:85:3045:60:2156:-139.934,0,-230.628	0/1:119:65,54:65:2336:54:1940:-128.478,0,-174.677	0/1:91:73,18:73:2605:18:636:-27.8786,0,-206.501	0/1:134:69,65:69:2454:65:2340:-155.106,0,-180.773	0/1:147:82,65:82:2933:65:2336:-152.746,0,-219.951	0/1:53:29,24:29:1044:24:855:-56.1387,0,-78.3202	0/1:360:294,65:294:10485:65:2340:-91.5188,0,-830.525	0/1:343:271,72:271:9683:72:2588:-119.241,0,-762.57	0/1:187:83,104:83:2972:104:3717:-260.221,0,-211.42	0/1:129:89,40:89:3162:40:1436:-83.7121,0,-245.9	0/1:207:80,127:80:2880:127:4545:-327.524,0,-196.774	0/1:150:112,38:112:3979:38:1344:-67.8662,0,-311.853	0/1:678:482,196:482:17135:196:7032:-397.761,0,-1328.89	0/1:365:198,167:198:7095:167:5957:-394.916,0,-528.732	0/1:77:42,35:42:1504:35:1260:-85.2737,0,-112.475	0/1:504:392,112:392:13925:112:3990:-192.884,0,-1093.55	0/1:346:220,126:220:7835:126:4515:-281.628,0,-596.042	0/1:272:215,57:215:7686:57:2039:-91.2634,0,-605.448	0/1:19:14,5:14:500:5:180:-10.1711,0,-39.5465	0/1:13:6,7:6:216:7:252:-18.1953,0,-15.8771	0/1:16:9,7:9:324:7:248:-15.1702,0,-24.6894	0/1:12:8,4:8:288:4:140:-8.65826,0,-22.5845	0/1:10:5,5:5:180:5:180:-12.5727,0,-13.5418	0/1:389:304,85:304:10849:85:3056:-143.35,0,-853.608	0/1:454:315,139:315:11285:139:4956:-287.167,0,-872.713	0/1:88:41,47:41:1449:47:1673:-114.81,0,-104.144	0/1:4:2,2:2:72:2:68:-4.59957,0,-5.6326	0/1:253:120,133:120:4312:133:4750:-329.086,0,-312.094	0/1:47:20,27:20:716:27:957:-67.614,0,-50.6193	0/1:379:194,185:194:6941:185:6633:-451.35,0,-510.663	0/1:119:79,40:79:2795:40:1424:-86.7051,0,-215.964	0/1:147:114,33:114:4013:33:1180:-56.5649,0,-315.19	0/1:178:135,43:135:4848:43:1533:-78.6493,0,-379.781	0/1:369:174,195:174:6210:195:6978:-476.15,0,-447.915	0/1:457:166,291:166:5938:291:10421:-749.64,0,-396.954	0/1:218:107,111:107:3825:111:3984:-270.375,0,-278.821	0/1:307:249,58:249:8872:58:2073:-82.4016,0,-702.237	0/1:236:166,70:166:5900:70:2501:-142.018,0,-457.328	0/1:34:8,26:8:284:26:936:-69.0186,0,-15.6683	0/1:253:95,158:95:3359:158:5672:-397.704,0,-226.364	0/1:110:33,77:33:1173:77:2726:-202.429,0,-72.7623	0/1:45:14,31:14:504:31:1116:-80.5799,0,-31.6803	0/1:298:216,82:216:7756:82:2923:-159.889,0,-605.007	0/1:89:62,27:62:2205:27:955:-55.59,0,-171.922	0/1:30:19,11:19:684:11:396:-25.4859,0,-52.7895	0/1:52:32,20:32:1148:20:716:-46.5846,0,-87.9763	0/1:168:65,103:65:2324:103:3669:-265.382,0,-158.847	0/1:211:152,59:152:5449:59:2124:-116.522,0,-422.993	0/1:8:6,2:6:216:2:72:-4.0966,0,-17.3823	0/1:406:202,204:202:7170:204:7286:-497.441,0,-523.135	0/1:506:383,123:383:13570:123:4401:-218.66,0,-1058.36	0/1:163:84,79:84:3005:79:2844:-194.244,0,-221.506	0/1:170:138,32:138:4956:32:1152:-46.6326,0,-389.368	0/1:388:308,80:308:10984:80:2880:-129.23,0,-865.848	0/1:251:110,141:110:3899:141:5034:-350.623,0,-275.543	0/1:43:36,7:36:1292:7:252:-8.38541,0,-103.639	0/1:169:126,43:126:4490:43:1529:-76.0337,0,-352.196	0/1:222:157,65:157:5601:65:2340:-132.495,0,-434.53	0/1:36:22,14:22:792:14:500:-31.6325,0,-60.6288	0/1:269:66,203:66:2361:203:7245:-526.515,0,-131.7	0/1:123:96,26:96:3425:26:932:-41.6617,0,-270.429	0/1:439:301,138:301:10766:138:4926:-289.787,0,-832.5	0/1:215:126,88:126:4494:88:3149:-203.713,0,-339.965	0/1:329:133,196:133:4735:196:7028:-487.848,0,-327.267	0/1:202:142,60:142:5059:60:2152:-120.881,0,-391.613	0/1:41:32,9:32:1137:9:324:-14.6809,0,-89.7501	0/1:282:104,178:104:3721:178:6377:-459.994,0,-250.129	0/1:219:163,56:163:5825:56:2004:-103.323,0,-455.366	0/1:599:307,292:307:10910:292:10389:-704.602,0,-801.483	0/1:200:106,94:106:3785:94:3361:-227.525,0,-280.642	0/1:128:101,27:101:3616:27:957:-43.4446,0,-285.702	0/1:194:133,61:133:4772:61:2169:-127.797,0,-371.236	0/1:271:149,122:149:5334:122:4384:-287.64,0,-398.61	0/1:88:69,19:69:2480:19:669:-29.6726,0,-195.308	0/1:125:68,57:68:2444:57:2048:-132.626,0,-182.584	0/1:126:107,19:107:3844:19:684:-20.2568,0,-306.013	0/1:52:36,16:36:1281:16:576:-33.7856,0,-99.3797	0/1:130:98,32:98:3528:32:1140:-57.8509,0,-274.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chr12	22719172	.	G	C	173122	PASS	AB=0.524465;ABP=101.186;AC=94;AF=0.5;AN=188;AO=9904;CIGAR=1X;DP=18884;DPB=18884;DPRA=0;EPP=21189.1;EPPR=19189.2;GTI=0;LEN=1;MEANALT=1.05319;MQM=59.9542;MQMR=39.5434;NS=94;NUMALT=1;ODDS=113.326;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=353507;QR=320422;RO=8975;RPL=9867;RPP=21189.1;RPPR=19189.2;RPR=37;RUN=1;SAF=0;SAP=21509.3;SAR=9904;SRF=0;SRP=19492;SRR=8975;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:103:47,56:47:1679:56:2003:-149.537,0,-109.165	0/1:339:115,224:115:4100:224:8027:-620.395,0,-246.928	0/1:226:85,141:85:3005:141:5007:-382.746,0,-188.201	0/1:383:172,210:172:6137:210:7503:-560.055,0,-408.19	0/1:154:69,85:69:2439:85:3052:-228.55,0,-166.969	0/1:137:70,67:70:2516:67:2383:-173.486,0,-176.136	0/1:203:121,82:121:4323:82:2930:-202.824,0,-303.654	0/1:324:156,168:156:5562:168:6008:-443.292,0,-375.62	0/1:249:128,121:128:4535:121:4320:-314.02,0,-318.722	0/1:206:104,102:104:3719:102:3663:-267.86,0,-255.21	0/1:93:40,53:40:1436:53:1904:-143.642,0,-92.6096	0/1:122:61,61:61:2188:61:2149:-156.951,0,-150.48	0/1:115:49,66:49:1751:66:2330:-175.339,0,-112.631	0/1:145:60,85:60:2147:85:3044:-230.54,0,-138.214	0/1:118:54,64:54:1928:64:2287:-170.569,0,-127.763	0/1:92:30,62:30:1072:62:2211:-171.56,0,-65.868	0/1:134:65,69:65:2310:69:2454:-180.776,0,-153.036	0/1:149:65,84:65:2319:84:2990:-224.478,0,-151.232	0/1:53:25,28:25:900:28:996:-74.0003,0,-59.9616	0/1:359:130,229:130:4650:229:8189:-628.951,0,-295.015	0/1:345:143,202:143:5110:202:7190:-543.301,0,-340.058	0/1:187:104,83:104:3706:83:2963:-210.61,0,-259.404	0/1:129:41,88:41:1476:88:3108:-241.113,0,-87.1544	0/1:206:131,75:131:4700:75:2681:-179.521,0,-340.754	0/1:151:61,90:61:2188:90:3196:-242.408,0,-142.044	0/1:671:314,356:314:11219:356:12698:-940.568,0,-768.645	0/1:358:162,196:162:5767:196:7024:-523.676,0,-384.151	0/1:80:36,44:36:1296:44:1572:-117.689,0,-86.5038	0/1:501:211,290:211:7519:290:10354:-780.648,0,-503.868	0/1:357:205,152:205:7316:152:5412:-379.744,0,-523.588	0/1:273:122,151:122:4367:151:5373:-401.511,0,-295.644	0/1:18:6,12:6:216:12:428:-33.4403,0,-13.6421	0/1:13:7,6:7:252:6:216:-15.8771,0,-18.1953	0/1:16:7,9:7:252:9:320:-24.3259,0,-15.4307	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.0933	0/1:10:5,5:5:180:5:180:-13.5418,0,-12.5727	0/1:386:163,223:163:5826:223:7975:-601.316,0,-388.498	0/1:454:225,229:225:8025:229:8160:-597.681,0,-556.787	0/1:88:47,41:47:1671:41:1459:-105.045,0,-114.895	0/1:4:2,2:2:63:2:72:-5.6326,0,-4.4018	0/1:258:135,123:135:4823:123:4382:-316.112,0,-333.236	0/1:47:27,20:27:972:20:716:-50.6193,0,-68.8429	0/1:384:186,198:186:6623:198:7068:-520.586,0,-449.801	0/1:119:40,79:40:1436:79:2816:-217.855,0,-87.5243	0/1:148:57,91:57:2031:91:3252:-248.219,0,-131.327	0/1:176:87,89:87:3108:89:3165:-232.093,0,-217.82	0/1:366:193,173:193:6911:173:6168:-445.041,0,-471.889	0/1:454:293,161:293:10475:161:5745:-380.499,0,-755.03	0/1:215:109,106:109:3895:106:3778:-275.498,0,-263.866	0/1:306:112,192:112:3997:192:6828:-522.774,0,-252.866	0/1:233:113,120:113:4048:120:4299:-316.946,0,-279.312	0/1:34:26,8:26:936:8:284:-15.6683,0,-69.0186	0/1:251:158,93:158:5664:93:3323:-223.729,0,-396.228	0/1:111:78,33:78:2775:33:1168:-72.0129,0,-206.448	0/1:43:35,8:35:1239:8:284:-12.9591,0,-92.255	0/1:294:128,165:128:4560:165:5879:-440.745,0,-304.997	0/1:88:27,61:27:968:61:2188:-170.695,0,-56.9293	0/1:30:12,18:12:420:18:648:-49.621,0,-27.7879	0/1:52:21,31:21:736:31:1116:-85.0981,0,-48.4811	0/1:168:105,63:105:3749:63:2264:-153.449,0,-272.172	0/1:210:116,94:116:4164:94:3364:-239.76,0,-296.339	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.0966	0/1:405:203,202:203:7237:202:7231:-528.925,0,-495.379	0/1:508:214,294:214:7609:294:10516:-792.577,0,-499.279	0/1:164:82,82:82:2940:82:2902:-212.045,0,-202.373	0/1:164:70,94:70:2495:94:3375:-254.596,0,-165.966	0/1:392:162,230:162:5816:230:8218:-621.605,0,-386.347	0/1:250:141,109:141:5039:109:3888:-274.856,0,-352.146	0/1:44:7,37:7:248:37:1323:-106.126,0,-7.82393	0/1:169:62,107:62:2211:107:3823:-293.393,0,-135.25	0/1:222:108,114:108:3859:114:4074:-299.888,0,-266.831	0/1:36:16,20:16:572:20:716:-53.9306,0,-37.9725	0/1:271:205,66:205:7310:66:2352:-129.423,0,-532.269	0/1:120:42,78:42:1499:78:2770:-213.416,0,-92.5144	0/1:436:199,237:199:7102:237:8466:-630.695,0,-481.968	0/1:215:87,128:87:3108:128:4541:-344.136,0,-199.902	0/1:330:195,135:195:6951:135:4848:-336.196,0,-483.339	0/1:202:103,99:103:3696:99:3556:-259.333,0,-256.941	0/1:41:18,23:18:639:23:828:-62.5019,0,-42.5311	0/1:281:180,101:180:6432:101:3628:-242.135,0,-465.611	0/1:220:99,121:99:3517:121:4322:-322.929,0,-236.877	0/1:603:297,306:297:10563:306:10911:-800.371,0,-718.414	0/1:199:93,106:93:3328:106:3783:-280.764,0,-225.117	0/1:130:49,81:49:1747:81:2875:-219.851,0,-112.241	0/1:194:61,133:61:2176:133:4748:-369.077,0,-128.329	0/1:267:120,147:120:4291:147:5224:-389.922,0,-281.574	0/1:87:41,46:41:1476:46:1639:-121.608,0,-100.358	0/1:124:56,68:56:2004:68:2421:-180.817,0,-129.158	0/1:125:46,79:46:1635:79:2840:-218.209,0,-104.287	0/1:53:25,28:25:892:28:1004:-74.7213,0,-61.2325	0/1:128:54,74:54:1907:74:2652:-200.3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chr12	22719180	.	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chr12	22731292	.	A	T	9988.06	PASS	AB=0.34191;ABP=1521.72;AC=44;AF=0.234043;AN=188;AO=2402;CIGAR=1X;DP=11468;DPB=11468;DPRA=1.64954;EPP=5218.89;EPPR=19587.6;GTI=6;LEN=1;MEANALT=1.11765;MQM=25.0183;MQMR=32.6088;NS=94;NUMALT=1;ODDS=0.323316;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86003;QR=324772;RO=9059;RPL=0;RPP=5218.89;RPPR=19596.3;RPR=2402;RUN=1;SAF=2402;SAP=5218.89;SAR=0;SRF=9058;SRP=19665.7;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:66:66,0:66:2372:0:0:0,-19.868,-184.1	0/1:154:112,42:112:4024:42:1500:-47.0134,0,-268.142	0/1:342:205,137:205:7336:137:4912:-201.174,0,-474.288	0/0:156:156,0:156:5574:0:0:0,-46.9607,-427.136	0/1:137:62,75:62:2224:75:2688:-125.398,0,-134.093	0/1:25:15,10:15:540:10:360:-14.9231,0,-34.6966	0/0:50:50,0:50:1796:0:0:0,-15.0515,-136.992	0/1:258:166,92:166:5960:92:3300:-126.717,0,-388.542	0/1:222:163,59:163:5860:59:2116:-64.3283,0,-391.907	0/0:88:88,0:88:3164:0:0:0,-26.4906,-244.344	0/0:62:62,0:62:2228:0:0:0,-18.6639,-169.529	0/1:181:120,61:120:4316:61:2170:-80.7885,0,-278.415	0/0:92:92,0:92:3304:0:0:0,-27.6948,-258.921	0/0:58:58,0:58:2080:0:0:0,-17.4597,-163.421	0/0:81:81,0:81:2904:0:0:0,-24.3834,-220.017	0/1:137:105,32:105:3772:32:1131:-29.7672,0,-251.92	0/0:38:38,0:38:1364:0:0:0,-11.4391,-107.695	0/0:38:38,0:38:1368:0:0:0,-11.4391,-107.887	0/0:39:39,0:39:1392:0:0:0,-11.7402,-109.569	0/1:318:207,111:207:7400:111:3984:-150.84,0,-472.713	0/1:264:163,101:163:5840:101:3620:-144.852,0,-371.736	0/0:97:97,0:97:3484:0:0:0,-29.1999,-267.307	0/0:78:78,0:78:2796:0:0:0,-23.4803,-213.86	0/0:64:61,3:61:2192:3:108:0,-12.3586,-164.693	0/1:142:92,49:92:3292:49:1760:-66.3041,0,-211.919	0/1:299:203,96:203:7281:96:3436:-123.174,0,-457.875	0/0:361:361,0:361:12956:0:0:0,-108.672,-1013.52	0/0:64:64,0:64:2300:0:0:0,-19.2659,-179.476	0/1:422:282,140:282:10105:140:5024:-183.878,0,-639.896	0/1:161:123,38:123:4416:38:1329:-35.4399,0,-293.82	0/1:230:168,62:168:6013:62:2224:-68.5807,0,-394.106	0/0:10:10,0:10:360:0:0:0,-3.0103,-28.2951	0/0:31:31,0:31:1112:0:0:0,-9.33193,-86.3877	0/0:8:8,0:8:288:0:0:0,-2.40824,-22.3961	0/1:16:13,3:13:468:3:108:-2.09086,0,-31.7831	0/1:55:44,10:44:1576:10:360:-5.8507,0,-106.862	0/1:291:200,91:200:7184:91:3272:-114.645,0,-455.476	0/1:80:55,25:55:1976:25:892:-31.5871,0,-130.832	0/0:65:65,0:65:2332:0:0:0,-19.5669,-182.074	0/1:7:6,1:6:216:1:36:-0.359696,0,-15.0728	0/0:83:83,0:83:2976:0:0:0,-24.9855,-232.441	0/0:34:34,0:34:1208:0:0:0,-10.235,-93.4627	0/0:206:206,0:206:7365:0:0:0,-62.0122,-574.98	0/0:103:103,0:103:3695:0:0:0,-31.0061,-281.594	0/1:93:61,32:61:2179:32:1148:-43.2565,0,-140.308	0/1:161:110,51:110:3944:51:1816:-64.8058,0,-253.658	0/0:141:141,0:141:5056:0:0:0,-42.4452,-393.949	0/0:167:167,0:167:5985:0:0:0,-50.272,-455.374	0/0:87:87,0:87:3124:0:0:0,-26.1896,-239.091	0/1:170:107,63:107:3829:63:2252:-88.7804,0,-243.518	0/1:117:73,44:73:2585:44:1576:-62.7971,0,-163.758	0/0:18:18,0:18:648:0:0:0,-5.41854,-50.1948	0/0:191:191,0:191:6868:0:0:0,-57.4967,-540.453	0/0:39:38,0:38:1368:0:0:0,-11.4391,-101.747	0/1:26:18,8:18:648:8:284:-10.0625,0,-43.0885	0/1:231:141,90:141:5049:90:3228:-130.724,0,-316.453	0/0:47:47,0:47:1672:0:0:0,-14.1484,-127.935	0/0:16:14,2:14:504:2:72:0,-0.129359,-34.5121	0/0:9:9,0:9:320:0:0:0,-2.70927,-25.1078	0/0:77:77,0:77:2748:0:0:0,-23.1793,-214.643	0/1:130:79,51:79:2840:51:1823:-75.0755,0,-179.499	0/0:13:13,0:13:468:0:0:0,-3.91339,-36.1063	0/0:140:140,0:140:5020:0:0:0,-42.1442,-384.229	0/1:250:143,106:143:5099:106:3800:-160.222,0,-316.827	0/0:75:74,1:74:2652:1:36:0,-20.1103,-206.252	0/1:146:84,62:84:3003:62:2216:-93.7849,0,-188.325	0/1:306:212,93:212:7599:93:3328:-114.46,0,-487.066	0/0:123:123,0:123:4392:0:0:0,-37.0267,-338.735	0/0:55:55,0:55:1976:0:0:0,-16.5566,-155.336	0/1:79:65,14:65:2340:14:504:-7.54833,0,-158.686	0/1:64:35,29:35:1260:29:1040:-45.3257,0,-76.6169	0/1:26:13,13:13:464:13:468:-21.2827,0,-28.1137	0/0:82:80,1:80:2864:1:36:0,-21.1618,-220.07	0/1:135:77,58:77:2760:58:2076:-88.2565,0,-174.629	0/1:205:137,68:137:4908:68:2432:-89.3454,0,-324.119	0/0:151:150,1:150:5396:1:36:0,-42.9886,-410.498	0/0:123:122,1:122:4384:1:36:0,-34.5598,-340.667	0/1:132:93,39:93:3336:39:1392:-46.9754,0,-219.65	0/1:19:13,6:13:468:6:212:-7.80653,0,-30.0683	0/0:129:129,0:129:4623:0:0:0,-38.8329,-358.544	0/1:196:132,64:132:4709:64:2292:-83.2978,0,-311.207	0/0:255:255,0:255:9148:0:0:0,-76.7626,-697.516	0/0:82:81,1:81:2904:1:36:0,-22.2176,-217.976	0/1:136:87,48:87:3124:48:1724:-66.2095,0,-199.364	0/0:52:52,0:52:1864:0:0:0,-15.6536,-143.546	0/0:123:123,0:123:4420:0:0:0,-37.0267,-335.879	0/1:37:27,10:27:972:10:360:-11.3107,0,-64.1949	0/0:72:72,0:72:2588:0:0:0,-21.6742,-202.277	0/1:138:85,53:85:3039:53:1904:-76.3347,0,-195.919	0/1:78:46,32:46:1648:32:1152:-47.8132,0,-104.831	0/1:152:108,44:108:3876:44:1580:-52.1384,0,-256.514	0/1:228:149,79:149:5344:79:2814:-106.563,0,-339.195	0/0:129:129,0:129:4624:0:0:0,-38.8329,-351.704	0/0:104:104,0:104:3724:0:0:0,-31.3071,-286.411
chr12	22731306	.	A	G	100800	PASS	AB=0.324757;ABP=1869.16;AC=143;AF=0.760638;AN=188;AO=6593;CIGAR=1X;DP=11360;DPB=11360;DPRA=0;EPP=13803.1;EPPR=35.5249;GTI=13;LEN=1;MEANALT=1.06383;MQM=32.61;MQMR=28.6891;NS=94;NUMALT=1;ODDS=2.11855;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235463;QR=170568;RO=4761;RPL=59;RPP=13811.6;RPPR=34.558;RPR=6534;RUN=1;SAF=6592;SAP=14310.8;SAR=1;SRF=4759;SRP=10324;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:66:1,65:1:36:65:2332:-179.689,-17.5891,0	0/1:156:100,56:100:3588:56:1996:-109.797,0,-207.395	0/1:339:233,106:233:8360:106:3794:-196.002,0,-473.683	1/1:155:1,154:1:36:154:5511:-422.093,-44.5731,0	0/1:139:104,35:104:3721:35:1256:-56.4694,0,-205.686	0/1:24:15,9:15:540:9:320:-17.9671,0,-29.3024	1/1:48:0,48:0:0:48:1701:-131.099,-14.4494,0	0/1:258:172,86:172:6161:86:3064:-162.407,0,-347.956	0/1:220:130,90:130:4663:90:3228:-187.754,0,-261.584	1/1:86:1,85:1:36:85:3033:-231.349,-22.3055,0	1/1:62:0,62:0:0:62:2211:-168.682,-18.6639,0	0/1:182:120,62:120:4316:62:2207:-115.948,0,-245.133	1/1:89:0,89:0:0:89:3191:-250.295,-26.7917,0	1/1:55:1,54:1:32:54:1907:-147.374,-13.6104,0	1/1:77:0,77:0:0:77:2760:-209.294,-23.1793,0	0/1:136:90,46:90:3217:46:1632:-88.0093,0,-190.568	1/1:39:1,38:1:36:38:1360:-103.671,-8.14361,0	1/1:39:0,39:0:0:39:1404:-110.699,-11.7402,0	1/1:36:0,36:0:0:36:1292:-100.966,-10.8371,0	0/1:317:204,113:204:7282:113:4008:-213.477,0,-405.28	0/1:261:199,62:199:7144:62:2216:-94.6367,0,-413.683	1/1:98:2,96:2:72:96:3421:-258.781,-24.6412,0	1/1:79:0,79:0:0:79:2810:-215.927,-23.7814,0	1/1:64:6,58:6:216:58:2072:-146.963,-3.89193,0	0/1:141:95,46:95:3416:46:1624:-83.9842,0,-193.725	0/1:300:194,106:194:6968:106:3789:-195.211,0,-385.003	1/1:358:2,356:2:72:356:12755:-992.768,-101.386,0	1/1:59:0,59:0:0:59:2087:-163.619,-17.7608,0	0/1:415:272,141:272:9751:141:5037:-262.32,0,-543.096	0/1:160:98,62:98:3501:62:2228:-124.752,0,-202.377	0/1:233:139,94:139:4943:94:3345:-187.561,0,-277.17	1/1:10:0,10:0:0:10:360:-28.2951,-3.0103,0	1/1:31:0,31:0:0:31:1112:-86.3877,-9.33193,0	1/1:8:0,8:0:0:8:284:-22.2342,-2.40824,0	0/1:15:6,9:6:216:9:320:-20.8065,0,-10.8585	0/1:56:28,28:28:1004:28:996:-61.7601,0,-56.1897	0/1:288:191,97:191:6852:97:3460:-176.013,0,-386.649	0/1:82:50,32:50:1796:32:1137:-65.1239,0,-100.289	1/1:64:0,64:0:0:64:2250:-176.989,-19.2659,0	0/1:6:2,4:2:72:4:144:-9.75128,0,-3.50484	1/1:80:0,80:0:0:80:2848:-223.177,-24.0824,0	1/1:32:1,31:1:36:31:1116:-85.9377,-7.83968,0	1/1:199:1,198:1:36:198:7060:-547.937,-56.3185,0	1/1:98:1,97:1:36:97:3460:-261.594,-25.9222,0	0/1:89:60,29:60:2156:29:1044:-53.7882,0,-121.842	0/1:160:109,51:109:3916:51:1817:-91.9382,0,-222.355	1/1:139:1,138:1:36:138:4926:-381.368,-38.7195,0	1/1:163:1,161:1:36:161:5764:-437.486,-46.576,0	1/1:88:1,87:1:36:87:3104:-235.238,-23.4361,0	0/1:170:125,45:125:4451:45:1620:-71.8654,0,-259.376	0/1:117:90,27:90:3236:27:968:-39.0907,0,-189.127	1/1:18:0,18:0:0:18:648:-50.1948,-5.41854,0	1/1:187:1,186:1:36:186:6676:-521.899,-53.169,0	1/1:39:0,39:0:0:39:1395:-105.089,-11.7402,0	0/1:23:11,12:11:396:12:432:-27.124,0,-19.4516	0/1:232:175,57:175:6234:57:2023:-87.9412,0,-358.096	1/1:48:0,48:0:0:48:1709:-130.158,-14.4494,0	0/1:16:3,13:3:108:13:468:-31.6339,0,-2.63931	1/1:8:0,8:0:0:8:280:-22.3512,-2.40824,0	1/1:75:1,73:1:36:73:2603:-199.953,-19.4124,0	0/1:128:90,38:90:3232:38:1364:-66.1366,0,-184.326	1/1:13:0,13:0:0:13:468:-36.1063,-3.91339,0	1/1:134:0,134:0:0:134:4816:-367.582,-40.338,0	0/1:247:179,68:179:6401:68:2429:-113.154,0,-357.596	1/1:74:5,69:5:176:69:2460:-180.619,-8.75692,0	0/1:145:94,51:94:3364:51:1832:-97.7104,0,-181.308	0/1:311:213,97:213:7633:97:3476:-173.915,0,-436.848	1/1:119:1,118:1:36:118:4193:-320.975,-33.174,0	1/1:53:0,53:0:0:53:1891:-148.52,-15.9546,0	0/1:79:58,21:58:2050:21:752:-35.5659,0,-127.871	0/1:64:39,25:39:1400:25:896:-49.1219,0,-72.6104	0/1:25:19,6:19:684:6:216:-9.41,0,-38.48	1/1:80:1,78:1:36:78:2791:-215.985,-21.5539,0	0/1:136:105,31:105:3760:31:1112:-46.3615,0,-217.98	0/1:206:149,57:149:5340:57:2044:-99.0939,0,-315.05	1/1:144:3,141:3:108:141:5039:-378.202,-35.2199,0	1/1:120:1,119:1:36:119:4263:-331.963,-33.6567,0	0/1:129:83,46:83:2976:46:1640:-88.8831,0,-171.866	0/1:19:8,11:8:288:11:388:-24.1606,0,-13.4874	1/1:127:1,126:1:36:126:4467:-346.236,-34.9847,0	0/1:201:142,59:142:5084:59:2120:-105.529,0,-298.3	1/1:248:1,247:1:36:247:8790:-671.783,-72.3766,0	1/1:80:1,79:1:36:79:2805:-210.98,-21.6155,0	0/1:139:95,44:95:3408:44:1575:-78.9404,0,-193.729	1/1:50:0,50:0:0:50:1796:-138.511,-15.0515,0	1/1:117:1,116:1:36:116:4146:-313.563,-32.7536,0	0/1:35:19,16:19:684:16:576:-34.2742,0,-36.8421	1/1:71:0,71:0:0:71:2512:-197.343,-21.3731,0	0/1:137:92,45:92:3300:45:1604:-84.7538,0,-185.281	0/1:79:56,23:56:2004:23:828:-40.1601,0,-114.926	0/1:153:99,54:99:3564:54:1936:-105.411,0,-204.887	0/1:228:166,62:166:5960:62:2232:-101.902,0,-343.298	1/1:131:2,129:2:68:129:4614:-347.343,-34.6995,0	1/1:106:0,106:0:0:106:3777:-290.543,-31.9092,0
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chr12	22760891	.	C	T	30161.3	PASS	AB=0.315316;ABP=2409.22;AC=46;AF=0.244681;AN=188;AO=2581;CIGAR=1X;DP=18542;DPB=18542;DPRA=0.962908;EPP=5607.58;EPPR=34638;GTI=8;LEN=1;MEANALT=1.03704;MQM=42.4979;MQMR=42.6931;NS=94;NUMALT=1;ODDS=2.03415;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=91716;QR=566670;RO=15958;RPL=2577;RPP=5572.89;RPPR=79.9608;RPR=4;RUN=1;SAF=2577;SAP=5572.89;SAR=4;SRF=7601;SRP=80.7816;SRR=8357;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:156:156,0:156:5537:0:0:0,-46.9607,-474.147	0/1:180:148,32:148:5264:32:1135:-45.0414,0,-387.183	0/1:232:171,61:171:6062:61:2188:-121.649,0,-450.023	0/0:511:511,0:511:18193:0:0:0,-153.826,-1594.94	0/1:121:75,46:75:2674:46:1635:-106.761,0,-197.399	0/1:80:40,40:40:1420:40:1428:-101.943,0,-99.9493	0/0:299:299,0:299:10585:0:0:0,-90.008,-928.396	0/1:212:161,51:161:5748:51:1816:-96.242,0,-428.348	0/1:167:107,60:107:3772:60:2129:-135.118,0,-274.539	0/0:224:223,1:223:7920:1:36:0,-63.928,-689.909	0/0:151:151,0:151:5351:0:0:0,-45.4555,-467.304	0/1:149:101,48:101:3590:48:1711:-105.697,0,-262.184	0/0:176:175,1:175:6175:1:36:0,-49.7351,-525.046	0/0:164:164,0:164:5825:0:0:0,-49.3689,-505.197	0/0:134:134,0:134:4749:0:0:0,-40.338,-418.439	0/1:104:84,20:84:3000:20:716:-31.8539,0,-230.06	0/0:131:131,0:131:4672:0:0:0,-39.4349,-394.739	0/0:109:109,0:109:3897:0:0:0,-32.8123,-329.008	0/0:81:81,0:81:2887:0:0:0,-24.3834,-247.767	0/1:404:277,127:277:9878:127:4466:-269.008,0,-746.232	0/1:252:158,94:158:5646:94:3291:-212.258,0,-415.327	0/0:191:191,0:191:6784:0:0:0,-57.4967,-601.792	0/0:201:201,0:201:7130:0:0:0,-60.507,-629.942	0/0:229:219,10:219:7706:10:360:0,-36.8947,-634.255	0/1:240:142,98:142:5029:98:3504:-233.318,0,-367.464	0/1:506:362,143:362:12890:143:5085:-296.766,0,-985.557	0/0:578:577,1:577:20415:1:36:0,-170.749,-1770.4	0/0:85:85,0:85:3020:0:0:0,-25.5875,-263.106	0/1:518:359,159:359:12764:159:5666:-343.896,0,-975.915	0/1:187:112,74:112:3971:74:2648:-177.123,0,-287.43	0/1:198:113,85:113:4033:85:3027:-204.824,0,-291.467	0/1:22:11,11:11:396:11:396:-28.5874,0,-28.1754	0/0:62:62,0:62:2200:0:0:0,-18.6639,-191.797	0/0:26:26,0:26:928:0:0:0,-7.82678,-79.6956	0/1:15:9,6:9:324:6:216:-14.8501,0,-24.1137	0/1:42:18,24:18:635:24:847:-60.6931,0,-42.3095	0/1:313:229,84:229:8138:84:2942:-165.545,0,-624.429	0/1:162:139,23:139:4968:23:819:-23.1475,0,-381.469	0/0:134:134,0:134:4739:0:0:0,-40.338,-405.484	0/1:12:8,4:8:279:4:144:-9.41537,0,-21.5113	0/0:383:383,0:383:13623:0:0:0,-115.294,-1184.2	0/0:111:111,0:111:3935:0:0:0,-33.4143,-343.224	0/0:380:380,0:380:13448:0:0:0,-114.391,-1168.74	0/0:185:185,0:185:6576:0:0:0,-55.6905,-572.09	0/1:95:61,34:61:2172:34:1207:-77.035,0,-162.694	0/1:213:133,80:133:4721:80:2838:-186.392,0,-354.699	0/0:274:274,0:274:9755:0:0:0,-82.4822,-828.991	0/0:332:332,0:332:11748:0:0:0,-99.942,-1029.41	0/0:271:271,0:271:9627:0:0:0,-81.5791,-843.084	0/1:288:224,64:224:7922:64:2271:-111.653,0,-605.439	0/1:291:208,83:208:7385:83:2932:-171.645,0,-564.841	0/0:36:36,0:36:1296:0:0:0,-10.8371,-114.193	0/0:308:307,1:307:10897:1:36:0,-89.4711,-926.119	0/0:114:114,0:114:4072:0:0:0,-34.3174,-361.318	0/1:14:7,7:7:248:7:252:-18.32,0,-17.6937	0/1:252:153,99:153:5462:99:3514:-231.987,0,-397.298	0/0:105:105,0:105:3734:0:0:0,-31.6081,-329.003	0/1:49:40,9:40:1436:9:311:-13.1532,0,-113.206	0/0:51:51,0:51:1823:0:0:0,-15.3525,-161.416	0/0:162:162,0:162:5728:0:0:0,-48.7669,-498.645	0/1:147:108,39:108:3813:39:1386:-76.483,0,-292.229	0/0:30:30,0:30:1053:0:0:0,-9.0309,-91.5185	0/0:435:435,0:435:15540:0:0:0,-130.948,-1370.46	0/1:291:210,81:210:7469:81:2865:-162.45,0,-564.319	0/0:135:134,1:134:4781:1:36:0,-37.118,-410.857	0/1:142:100,42:100:3565:42:1485:-87.6797,0,-269.448	0/1:241:175,66:175:6234:66:2343:-131.576,0,-473.37	0/0:205:204,0:204:7253:0:0:0,-61.4101,-634.128	0/0:92:92,0:92:3300:0:0:0,-27.6948,-287.639	0/1:95:75,20:75:2687:20:720:-34.6143,0,-197.888	0/1:87:66,21:66:2357:21:752:-40.0156,0,-181.27	0/1:48:40,8:40:1402:8:288:-10.9941,0,-109.033	0/0:159:159,0:159:5625:0:0:0,-47.8638,-483.34	0/1:176:102,74:102:3614:74:2633:-178.583,0,-254.062	0/1:327:191,136:191:6756:136:4838:-326.476,0,-489.665	0/0:477:473,4:473:16824:4:144:0,-130.631,-1459.47	0/0:231:230,1:230:8146:1:36:0,-66.0169,-695.735	0/1:227:161,66:161:5731:66:2364:-139.795,0,-416.463	0/1:51:28,23:28:1000:23:828:-57.6632,0,-70.732	0/0:335:335,0:335:11936:0:0:0,-100.845,-1031.92	0/1:305:213,92:213:7555:92:3267:-193.566,0,-553.987	0/0:486:486,0:486:17249:0:0:0,-146.301,-1510.8	0/0:186:186,0:186:6556:0:0:0,-55.9916,-575.257	0/1:110:78,32:78:2775:32:1139:-65.4414,0,-211.615	0/0:170:170,0:170:6048:0:0:0,-51.1751,-527.659	0/0:306:306,0:306:10812:0:0:0,-92.1152,-949.947	0/1:57:50,7:50:1784:7:239:-4.29145,0,-134.584	0/0:162:162,0:162:5715:0:0:0,-48.7669,-486.194	0/1:126:95,31:95:3388:31:1108:-58.9745,0,-251.595	0/1:99:60,39:60:2102:39:1396:-93.4381,0,-154.647	0/1:159:102,57:102:3571:57:2040:-131.443,0,-264.427	0/1:116:55,61:55:1959:61:2171:-153.653,0,-137.546	0/0:373:373,0:373:13273:0:0:0,-112.284,-1164.12	0/0:284:284,0:284:9995:0:0:0,-85.4925,-879.368
chr12	22762341	.	C	T	159762	PASS	AB=0.474061;ABP=35.6795;AC=144;AF=0.765957;AN=188;AO=7714;CIGAR=1X;DP=10683;DPB=10683;DPRA=0;EPP=16753.7;EPPR=6434.91;GTI=3;LEN=1;MEANALT=1.03191;MQM=59.6782;MQMR=59.938;NS=94;NUMALT=1;ODDS=1.22085;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=275221;QR=105541;RO=2966;RPL=7714;RPP=16753.7;RPPR=6426.24;RPR=0;RUN=1;SAF=7714;SAP=16753.7;SAR=0;SRF=2965;SRP=6434.91;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:59:0,59:0:0:59:2098:-188.859,-17.7608,0	0/1:138:83,55:83:2918:55:1972:-136.195,0,-221.303	0/1:82:46,36:46:1648:36:1283:-91.0882,0,-123.924	1/1:142:0,142:0:0:142:5080:-457.056,-42.7463,0	0/1:100:43,57:43:1527:57:2048:-154.469,0,-107.619	0/1:108:53,55:53:1900:55:1968:-144.883,0,-138.767	1/1:149:0,149:0:0:149:5320:-478.801,-44.8535,0	0/1:153:79,74:79:2822:74:2664:-193.922,0,-208.16	0/1:128:51,77:51:1789:77:2739:-208.204,0,-122.758	1/1:108:1,107:1:36:107:3815:-339.937,-28.913,0	1/1:27:0,27:0:0:27:964:-87.0745,-8.12781,0	0/1:91:46,45:46:1632:45:1599:-116.71,0,-119.775	1/1:79:0,79:0:0:79:2811:-253.213,-23.7814,0	1/1:85:0,85:0:0:85:3025:-272.471,-25.5876,0	1/1:66:1,65:1:36:65:2320:-205.427,-16.2697,0	0/1:55:24,31:24:851:31:1104:-83.114,0,-60.3528	1/1:57:0,57:0:0:57:2017:-181.722,-17.1587,0	1/1:67:0,67:0:0:67:2374:-213.9,-20.169,0	1/1:31:1,30:1:36:30:1072:-93.186,-5.73366,0	0/1:246:141,105:141:5015:105:3755:-264.022,0,-377.444	0/1:123:77,46:77:2730:46:1618:-108.87,0,-208.914	1/1:236:0,235:0:0:235:8386:-753.938,-70.7421,0	1/1:103:0,103:0:0:103:3677:-330.998,-31.0061,0	1/1:190:14,176:14:504:176:6286:-519.933,-11.4976,0	0/1:120:79,41:79:2791:41:1472:-96.6479,0,-215.301	0/1:482:240,242:240:8531:242:8653:-633.156,0,-622.482	1/1:248:0,248:0:0:248:8844:-795.387,-74.6554,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:224:113,111:113:4036:111:3948:-288.05,0,-295.998	0/1:183:87,96:87:3116:96:3441:-254.575,0,-225.578	0/1:216:102,114:102:3615:114:4033:-298.136,0,-260.372	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:12:0,12:0:0:12:423:-38.4004,-3.61236,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/1:240:132,108:132:4678:108:3824:-272.098,0,-348.935	0/1:323:148,175:148:5287:175:6255:-465.752,0,-378.721	1/1:44:0,44:0:0:44:1565:-141.107,-13.2453,0	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	1/1:104:0,104:0:0:104:3702:-333.376,-31.3071,0	1/1:31:0,31:0:0:31:1108:-100.024,-9.33193,0	1/1:255:0,255:0:0:255:9074:-816.541,-76.7627,0	1/1:96:1,95:1:36:95:3380:-300.732,-25.3006,0	0/1:57:25,32:25:891:32:1148:-86.4711,0,-63.3501	0/1:242:122,120:122:4329:120:4262:-310.771,0,-316.938	1/1:134:1,133:1:36:133:4731:-422.279,-36.7397,0	1/1:160:0,160:0:0:160:5727:-515.5,-48.1648,0	1/1:124:0,124:0:0:124:4430:-398.798,-37.3277,0	0/1:140:84,56:84:2996:56:1996:-137.762,0,-227.728	0/1:226:117,109:117:4179:109:3868:-280.196,0,-308.26	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:126:0,126:0:0:126:4491:-404.333,-37.9298,0	1/1:45:0,45:0:0:45:1599:-144.191,-13.5464,0	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/1:93:47,46:47:1680:46:1622:-118.27,0,-123.491	1/1:79:0,79:0:0:79:2828:-254.75,-23.7814,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:35:0,35:0:0:35:1248:-112.625,-10.5361,0	1/1:87:0,87:0:0:87:3123:-281.161,-26.1896,0	0/1:136:65,71:65:2323:71:2544:-188.268,0,-168.389	1/1:10:0,10:0:0:10:356:-32.3789,-3.0103,0	1/1:201:0,201:0:0:201:7200:-647.918,-60.507,0	0/1:302:169,133:169:6041:133:4734:-335.284,0,-452.856	1/1:107:2,105:2:72:105:3738:-329.756,-25.3735,0	0/1:24:8,16:8:276:16:576:-44.9503,0,-17.9505	0/1:225:126,98:126:4460:98:3485:-246.059,0,-333.777	1/1:133:3,130:3:108:130:4657:-409.198,-29.9618,0	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	0/1:86:42,44:42:1499:44:1584:-116.947,0,-109.315	0/1:119:60,59:60:2117:59:2116:-154.862,0,-154.975	0/1:41:17,24:17:608:24:840:-63.5732,0,-42.6921	1/1:165:0,165:0:0:165:5873:-528.347,-49.67,0	0/1:80:56,24:56:2008:24:860:-53.6313,0,-156.911	0/1:209:113,95:113:4015:95:3379:-241.347,0,-298.554	1/1:135:0,135:0:0:135:4837:-435.313,-40.6391,0	1/1:137:0,137:0:0:137:4884:-439.51,-41.2411,0	0/1:87:41,46:41:1463:46:1648:-122.419,0,-105.776	0/1:12:5,7:5:180:7:243:-18.5951,0,-12.9397	1/1:119:0,119:0:0:119:4253:-382.937,-35.8226,0	0/1:121:66,55:66:2363:55:1960:-140.21,0,-176.503	1/1:277:1,276:1:36:276:9883:-885.585,-79.787,0	1/1:177:0,177:0:0:177:6333:-569.42,-53.2823,0	0/1:45:30,15:30:1072:15:540:-35.3902,0,-83.2461	1/1:110:1,109:1:32:109:3896:-347.501,-29.914,0	1/1:184:2,182:2:72:182:6499:-578.149,-48.5528,0	0/1:46:29,17:29:1036:17:596:-40.1122,0,-79.7065	1/1:90:0,90:0:0:90:3190:-286.938,-27.0927,0	0/1:55:25,30:25:888:30:1076:-80.5825,0,-63.6824	0/1:19:8,11:8:284:11:381:-28.9011,0,-20.1838	0/1:73:49,24:49:1743:24:864:-56.0992,0,-135.173	0/1:102:73,29:73:2588:29:1036:-62.8489,0,-202.463	1/1:95:0,95:0:0:95:3379:-304.316,-28.5979,0	1/1:103:0,103:0:0:103:3695:-332.737,-31.0061,0
chr12	22771937	.	A	G	164376	PASS	AB=0.510008;ABP=7.53044;AC=140;AF=0.76087;AN=184;AO=7895;CIGAR=1X;DP=10464;DPB=10464;DPRA=0;EPP=17138.1;EPPR=5577.18;GTI=0;LEN=1;MEANALT=1.02174;MQM=53.8935;MQMR=59.665;NS=92;NUMALT=1;ODDS=1.04907;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=281284;QR=90210;RO=2567;RPL=0;RPP=17146.8;RPPR=5577.18;RPR=7895;RUN=1;SAF=7894;SAP=17138.1;SAR=1;SRF=2567;SRP=5577.18;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:23:0,23:0:0:23:809:-72.5507,-6.92369,0	0/1:132:67,65:67:2346:65:2336:-168.786,0,-171.637	0/1:185:83,102:83:2937:102:3656:-272.196,0,-208.837	1/1:232:1,231:1:36:231:8204:-731.833,-66.2407,0	0/1:81:26,55:26:900:55:1976:-153.055,0,-56.9251	0/1:49:30,19:30:1056:19:676:-46.2835,0,-80.6004	1/1:139:0,139:0:0:139:4965:-445.142,-41.8432,0	0/1:216:96,120:96:3363:120:4285:-318.016,0,-237.836	0/1:114:49,65:49:1725:65:2313:-172.759,0,-121.159	1/1:124:0,124:0:0:124:4408:-395.568,-37.3277,0	1/1:67:0,67:0:0:67:2366:-212.613,-20.169,0	0/1:75:41,34:41:1448:34:1209:-86.2083,0,-108.019	1/1:87:0,87:0:0:87:3105:-278.438,-26.1896,0	1/1:96:1,95:1:36:95:3353:-297.424,-25.3006,0	1/1:96:0,96:0:0:96:3440:-308.904,-28.8989,0	0/1:56:30,26:30:1072:26:932:-67.0973,0,-79.9314	1/1:134:1,133:1:36:133:4717:-418.602,-36.7397,0	1/1:83:0,83:0:0:83:2947:-263.424,-24.9855,0	1/1:30:0,30:0:0:30:1072:-95.7499,-9.0309,0	0/1:230:113,117:113:3990:117:4178:-306.331,0,-290.005	0/1:148:70,78:70:2462:78:2796:-206.645,0,-177.255	1/1:166:0,166:0:0:166:5935:-532.674,-49.971,0	1/1:139:2,137:2:68:137:4881:-432.172,-35.3855,0	1/1:118:2,116:2:72:116:4134:-364.715,-28.6848,0	0/1:90:36,54:36:1279:54:1940:-145.901,0,-88.3197	0/1:340:167,173:167:5894:173:6147:-450.089,0,-428.103	1/1:221:0,221:0:0:221:7870:-705.982,-66.5276,0	1/1:53:0,53:0:0:53:1865:-167.201,-15.9546,0	0/1:274:128,146:128:4422:146:5183:-383.578,0,-315.643	0/1:140:80,60:80:2852:60:2152:-151.369,0,-214.753	0/1:135:78,57:78:2673:57:2021:-141.256,0,-200.172	0/1:3:1,2:1:36:2:72:-5.92394,0,-2.69518	1/1:8:0,8:0:0:8:280:-25.5039,-2.40824,0	.:.:.:.:.:.:.:.	.:.:.:.:.:.:.:.	0/1:6:4,2:4:144:2:72:-5.00748,0,-11.5074	0/1:265:139,126:139:4952:126:4519:-326.103,0,-366.056	0/1:219:106,113:106:3761:113:4026:-295.767,0,-271.87	1/1:67:0,67:0:0:67:2376:-213.018,-20.169,0	1/1:1:0,1:0:0:1:36:-3.59317,-0.30103,0	1/1:158:0,158:0:0:158:5642:-505.768,-47.5627,0	1/1:36:1,35:1:36:35:1237:-107.611,-7.23881,0	1/1:167:0,167:0:0:167:5973:-534.815,-50.272,0	1/1:110:1,109:1:36:109:3908:-346.747,-29.515,0	0/1:85:41,44:41:1468:44:1584:-116.782,0,-106.825	0/1:102:59,43:59:2049:43:1530:-107.184,0,-153.971	1/1:88:0,88:0:0:88:3137:-281.613,-26.4906,0	1/1:199:0,199:0:0:199:7071:-634.884,-59.905,0	1/1:132:0,132:0:0:132:4679:-419.776,-39.736,0	0/1:172:84,88:84:2943:88:3095:-226.646,0,-213.23	0/1:152:61,91:61:2095:91:3218:-243.798,0,-142.994	1/1:19:0,19:0:0:19:684:-61.6552,-5.71957,0	1/1:115:0,115:0:0:115:4136:-370.844,-34.6185,0	1/1:52:0,52:0:0:52:1860:-167.347,-15.6536,0	0/1:12:5,7:5:180:7:248:-18.9989,0,-12.7459	0/1:142:71,71:71:2521:71:2521:-183.733,0,-184.331	1/1:38:0,38:0:0:38:1353:-121.726,-11.4391,0	0/1:7:1,6:1:36:6:216:-17.6778,0,-1.49106	1/1:4:0,4:0:0:4:144:-13.3099,-1.20412,0	1/1:89:0,88:0:0:88:3136:-280.789,-26.4906,0	0/1:115:52,63:52:1841:63:2256:-168.287,0,-131.34	1/1:6:0,6:0:0:6:216:-19.7762,-1.80618,0	1/1:279:1,278:1:36:278:9918:-886.874,-80.3891,0	0/1:180:84,96:84:2966:96:3440:-254.531,0,-212.972	1/1:126:10,116:10:356:116:4149:-338.979,-5.54853,0	0/1:74:37,37:37:1265:37:1316:-96.1505,0,-91.8671	0/1:219:98,121:98:3383:121:4302:-320.653,0,-238.735	1/1:111:1,110:1:36:110:3888:-344.92,-29.8161,0	1/1:20:0,20:0:0:20:720:-64.7542,-6.0206,0	0/1:73:35,38:35:1222:38:1352:-99.7092,0,-88.288	0/1:84:47,37:47:1642:37:1317:-93.3117,0,-122.769	0/1:22:15,7:15:520:7:248:-16.0241,0,-40.5029	1/1:91:0,90:0:0:90:3199:-286.535,-27.0927,0	0/1:74:44,30:44:1549:30:1061:-73.1952,0,-117.421	0/1:182:83,99:83:2869:99:3522:-261.467,0,-203.648	1/1:203:0,203:0:0:203:7231:-649.794,-61.1091,0	1/1:171:0,171:0:0:171:6073:-541.259,-51.4761,0	0/1:135:72,63:72:2480:63:2227:-159.366,0,-182.795	0/1:19:8,11:8:288:11:396:-29.9894,0,-20.5478	1/1:159:0,159:0:0:159:5684:-509.331,-47.8638,0	0/1:145:65,80:65:2332:80:2868:-213.3,0,-166.409	1/1:239:0,239:0:0:239:8521:-765.563,-71.9462,0	1/1:146:0,146:0:0:146:5220:-468.661,-43.9504,0	0/1:97:51,46:51:1794:46:1652:-119.274,0,-132.534	1/1:154:0,154:0:0:154:5509:-494.423,-46.3586,0	1/1:170:0,170:0:0:170:6070:-543.451,-51.1751,0	0/1:53:29,24:29:1044:24:840:-59.7784,0,-78.3202	1/1:94:0,94:0:0:94:3338:-298.685,-28.2968,0	0/1:82:43,39:43:1532:39:1377:-98.084,0,-113.48	0/1:52:25,27:25:877:27:964:-71.1759,0,-63.5861	0/1:73:38,35:38:1330:35:1228:-88.3028,0,-97.8815	0/1:87:54,33:54:1924:33:1164:-78.7475,0,-147.239	1/1:73:0,73:0:0:73:2575:-231.096,-21.9752,0	1/1:135:0,135:0:0:135:4819:-432.973,-40.6391,0
chr12	22772006	.	CTTCT	CTTTT	115115	PASS	AB=0.488305;ABP=7.53073;AC=143;AF=0.760638;AN=188;AO=5484;CIGAR=3M1X1M;DP=7608;DPB=7582.8;DPRA=27.2581;EPP=11911.4;EPPR=4076.7;GTI=3;LEN=1;MEANALT=2.23656;MQM=59.9869;MQMR=59.9899;NS=94;NUMALT=1;ODDS=0.201798;PAIRED=0;PAIREDR=0;PAO=0.583333;PQA=21;PQR=9;PRO=0.25;QA=196453;QR=66126;RO=1880;RPL=0;RPP=11911.4;RPPR=4076.7;RPR=5484;RUN=1;SAF=0;SAP=11911.4;SAR=5484;SRF=0;SRP=4085.38;SRR=1880;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:73:46,27:46:1574:27:953:-64.1081,0,-119.969	0/1:82:38,40:38:1335:40:1440:-106.058,0,-96.608	1/1:204:0,187:0:0:187:6705:-603.121,-56.2926,0	0/1:55:28,27:28:995:27:964:-70.5196,0,-73.3084	0/1:37:14,23:14:495:23:813:-62.351,0,-33.7452	1/1:81:0,80:0:0:80:2857:-257.006,-24.0824,0	0/1:112:58,51:58:2064:51:1832:-131.989,0,-152.859	0/1:95:46,48:46:1589:48:1720:-126.328,0,-114.542	1/1:56:0,53:0:0:53:1885:-169.567,-15.9546,0	1/1:58:0,54:0:0:54:1940:-174.516,-16.2556,0	0/1:117:64,53:64:2246:53:1908:-136.777,0,-167.183	1/1:111:0,109:0:0:109:3912:-351.927,-32.8123,0	1/1:61:0,57:0:0:57:2040:-183.512,-17.1587,0	1/1:85:0,80:0:0:80:2850:-256.375,-24.0824,0	0/1:78:37,37:37:1305:37:1328:-97.1863,0,-95.1163	1/1:37:0,35:0:0:35:1252:-112.625,-10.5361,0	1/1:47:0,42:0:0:42:1504:-135.327,-12.6433,0	1/1:44:0,44:0:0:44:1580:-142.492,-13.2453,0	0/1:210:96,105:96:3371:105:3772:-278.819,0,-242.751	0/1:110:46,63:46:1627:63:2264:-170.85,0,-113.547	1/1:55:0,52:0:0:52:1868:-168.039,-15.6536,0	1/1:61:0,61:0:0:61:2177:-196.194,-18.3628,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:57:38,19:38:1312:19:680:-44.3705,0,-101.219	0/1:201:105,90:105:3711:90:3236:-232.4,0,-275.136	1/1:154:0,147:0:0:147:5288:-475.702,-44.2514,0	1/1:46:0,46:0:0:46:1656:-149.328,-13.8474,0	0/1:175:89,83:89:3160:83:2964:-214.855,0,-232.49	0/1:83:36,45:36:1254:45:1605:-119.995,0,-88.416	0/1:91:47,41:47:1647:41:1468:-105.566,0,-121.667	0/0:3:3,0:3:106:0:0:0,-0.90309,-9.8891	1/1:17:0,16:0:0:16:576:-51.8152,-4.81648,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:11:7,4:7:228:4:144:-10.0023,0,-17.526	0/1:18:9,9:9:318:9:324:-24.0873,0,-23.5424	0/1:246:125,116:125:4406:116:4149:-300.683,0,-323.811	0/1:69:32,36:32:1129:36:1296:-96.1095,0,-81.0891	1/1:47:0,46:0:0:46:1656:-148.969,-13.8474,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:150:0,144:0:0:144:5158:-464.016,-43.3483,0	1/1:30:0,28:0:0:28:1004:-90.3161,-8.42884,0	1/1:86:0,83:0:0:83:2972:-267.401,-24.9855,0	1/1:57:0,54:0:0:54:1931:-173.706,-16.2556,0	0/1:64:32,30:32:1103:30:1065:-77.1364,0,-80.5515	0/1:87:47,38:47:1678:38:1353:-96.1786,0,-125.418	1/1:119:1,111:1:36:111:3992:-355.874,-30.4762,0	1/1:168:0,162:0:0:162:5801:-521.842,-48.7669,0	1/1:106:0,101:0:0:101:3632:-326.69,-30.404,0	0/1:111:47,62:47:1654:62:2224:-167.252,0,-115.975	0/1:56:37,19:37:1296:19:684:-45.0326,0,-100.082	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:105:0,98:0:0:98:3524:-317.016,-29.5009,0	1/1:54:0,52:0:0:52:1857:-167.101,-15.6536,0	1/1:14:1,13:1:22:13:464:-39.8976,-2.01449,0	0/1:126:46,75:46:1620:75:2692:-205.762,0,-109.327	1/1:26:0,23:0:0:23:824:-74.1413,-6.92369,0	0/1:18:7,10:7:248:10:360:-27.267,0,-17.1877	1/1:8:0,7:0:0:7:252:-22.6691,-2.10721,0	1/1:47:0,45:0:0:45:1605:-144.378,-13.5464,0	0/1:120:59,59:59:2086:59:2113:-154.557,0,-152.129	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:148:0,145:0:0:145:5160:-464.198,-43.6494,0	0/1:120:60,60:60:2112:60:2160:-158.543,0,-154.224	1/1:54:3,49:3:108:49:1741:-146.897,-5.93822,0	0/1:95:40,51:40:1423:51:1836:-137.767,0,-100.614	0/1:126:58,66:58:2040:66:2361:-175.059,0,-146.184	1/1:132:1,127:1:36:127:4560:-406.966,-35.2934,0	1/1:50:1,47:1:36:47:1692:-148.969,-11.211,0	0/1:30:18,12:18:638:12:428:-29.8279,0,-48.718	0/1:53:26,26:26:919:26:932:-68.2047,0,-67.0324	0/1:24:13,11:13:443:11:396:-28.758,0,-32.9706	1/1:127:0,116:0:0:116:4157:-373.951,-34.9195,0	0/1:86:49,35:49:1730:35:1246:-86.7977,0,-130.338	0/1:127:40,86:40:1398:86:3077:-238.867,0,-87.825	1/1:120:0,113:0:0:113:4030:-362.537,-34.0164,0	1/1:120:0,113:0:0:113:4050:-364.362,-34.0164,0	0/1:92:54,37:54:1911:37:1328:-92.0687,0,-144.514	0/1:12:5,7:5:177:7:252:-19.4166,0,-12.6645	1/1:104:1,101:1:36:101:3613:-321.776,-27.4666,0	0/1:95:39,54:39:1361:54:1944:-146.88,0,-94.4317	1/1:140:0,140:0:0:140:5024:-452.305,-42.1442,0	1/1:61:0,58:0:0:58:2084:-187.468,-17.4597,0	0/1:82:32,47:32:1132:47:1684:-127.706,0,-78.0473	1/1:54:0,53:0:0:53:1904:-171.278,-15.9546,0	1/1:147:0,141:0:0:141:5028:-452.303,-42.4452,0	0/1:26:14,11:14:497:11:396:-28.1521,0,-37.2354	1/1:104:0,99:0:0:99:3538:-318.284,-29.802,0	0/1:107:56,51:56:1949:51:1832:-132.951,0,-143.473	0/1:45:22,21:22:787:21:748:-54.3415,0,-57.851	0/1:96:47,44:47:1677:44:1565:-113.387,0,-123.464	0/1:87:57,29:57:1993:29:1044:-68.0264,0,-153.395	1/1:134:0,131:0:0:131:4666:-419.751,-39.4349,0	1/1:116:3,108:3:108:108:3884:-339.678,-23.699,0
chr12	22794541	.	T	C	47028.5	PASS	AB=0.550816;ABP=112.915;AC=47;AF=0.25;AN=188;AO=2717;CIGAR=1X;DP=8893;DPB=8893;DPRA=1.35119;EPP=5902.9;EPPR=13338.1;GTI=4;LEN=1;MEANALT=1.01961;MQM=59.9823;MQMR=60;NS=94;NUMALT=1;ODDS=1.6321;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97293;QR=221131;RO=6173;RPL=0;RPP=5902.9;RPPR=13338.1;RPR=2717;RUN=1;SAF=2717;SAP=5902.9;SAR=0;SRF=6173;SRP=13407.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:167:73,94:73:2620:94:3348:-251.264,0,-185.775	0/1:97:36,61:36:1292:61:2170:-166.366,0,-87.3839	0/0:123:122,0:122:4380:0:0:0,-36.7257,-394.121	0/1:50:22,28:22:792:28:978:-73.2797,0,-56.5542	0/1:68:32,36:32:1148:36:1279:-94.9424,0,-83.1598	0/0:106:106,0:106:3789:0:0:0,-31.9092,-341.207	0/1:257:131,126:131:4689:126:4527:-330.23,0,-344.804	0/1:89:49,40:49:1760:40:1436:-102.746,0,-131.892	0/0:126:126,0:126:4516:0:0:0,-37.9298,-406.607	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:51:23,28:23:824:28:1008:-75.6838,0,-59.1308	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:84:83,1:83:2976:1:36:0,-21.6882,-264.474	0/0:42:42,0:42:1504:0:0:0,-12.6433,-135.655	0/1:32:18,14:18:648:14:504:-36.0651,0,-49.0189	0/0:94:94,0:94:3372:0:0:0,-28.2968,-303.695	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/1:121:70,51:70:2516:51:1832:-128.736,0,-190.267	0/1:180:82,98:82:2933:98:3508:-261.745,0,-210.017	0/0:78:78,0:78:2789:0:0:0,-23.4803,-251.249	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:159:150,9:150:5383:9:314:0,-19.2676,-456.003	0/1:72:35,37:35:1252:37:1328:-98.1481,0,-91.3109	0/1:394:155,239:155:5561:239:8556:-651.431,0,-382.005	0/0:117:117,0:117:4204:0:0:0,-35.2205,-378.539	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:196:98,98:98:3492:98:3500:-256.209,0,-255.488	0/1:154:68,86:68:2436:86:3070:-230.17,0,-173.137	0/1:141:61,80:61:2196:80:2860:-215.193,0,-155.46	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/1:176:68,108:68:2421:108:3880:-296.412,0,-165.163	0/1:249:126,122:126:4501:122:4372:-318.783,0,-330.391	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:104:104,0:104:3721:0:0:0,-31.3071,-335.09	0/0:36:36,0:36:1277:0:0:0,-10.8371,-115.231	0/0:134:134,0:134:4765:0:0:0,-40.338,-429.006	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/1:71:45,26:45:1602:26:927:-62.3742,0,-123.096	0/1:142:50,92:50:1792:92:3308:-255.146,0,-118.816	0/0:115:114,1:114:4061:1:36:0,-31.0202,-362.079	0/0:185:185,0:185:6637:0:0:0,-55.6905,-597.405	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	0/1:154:59,95:59:2093:95:3410:-260.755,0,-142.28	0/1:145:40,105:40:1440:105:3764:-295.31,0,-86.2484	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:99:99,0:99:3560:0:0:0,-29.802,-320.607	0/0:45:45,0:45:1586:0:0:0,-13.5463,-143.026	0/1:14:6,8:6:216:8:284:-21.6889,0,-15.5761	0/1:98:42,56:42:1493:56:2007:-151.402,0,-105.162	0/0:13:13,0:13:453:0:0:0,-3.91339,-41.0996	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/0:95:95,0:95:3378:0:0:0,-28.5978,-304.234	0/1:131:69,62:69:2476:62:2222:-160.809,0,-183.658	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/0:182:182,0:182:6513:0:0:0,-54.7875,-586.252	0/1:213:96,117:96:3448:117:4176:-311.854,0,-246.412	0/0:68:63,5:63:2260:5:176:0,-4.28502,-187.478	0/1:76:30,46:30:1076:46:1656:-126.45,0,-74.2746	0/1:208:100,108:100:3592:108:3852:-284.26,0,-260.871	0/0:103:103,0:103:3704:0:0:0,-31.0061,-333.56	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/1:123:25,98:25:892:98:3511:-279.173,0,-43.573	0/1:118:60,58:60:2160:58:2088:-152.668,0,-159.145	0/1:39:18,21:18:640:21:752:-56.2661,0,-46.1891	0/0:98:98,0:98:3509:0:0:0,-29.5009,-316.018	0/1:72:35,37:35:1248:37:1332:-98.5082,0,-90.9507	0/1:181:98,83:98:3520:83:2971:-213.136,0,-262.522	0/0:137:137,0:137:4924:0:0:0,-41.2411,-443.308	0/0:107:106,0:106:3785:0:0:0,-31.9092,-340.636	0/1:95:45,50:45:1593:50:1787:-132.514,0,-115.06	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/0:77:77,0:77:2757:0:0:0,-23.1793,-248.37	0/1:94:47,47:47:1688:47:1692:-124.27,0,-123.91	0/0:227:227,0:227:8129:0:0:0,-68.3338,-731.624	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.532	0/1:61:34,27:34:1220:27:972:-69.4351,0,-91.744	0/0:127:127,0:127:4568:0:0:0,-38.2308,-411.283	0/0:149:148,1:148:5320:1:36:0,-41.2552,-475.333	0/1:41:18,23:18:648:23:824:-62.1411,0,-46.3097	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.951	0/1:59:26,33:26:936:33:1188:-89.4678,0,-66.7987	0/1:42:17,25:17:612:25:900:-68.6778,0,-42.7702	0/1:83:40,43:40:1436:43:1540:-113.908,0,-104.552	0/1:100:31,69:31:1116:69:2476:-192.99,0,-70.6487	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453
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chr12	22835263	.	T	A	40829.9	PASS	AB=0.630019;ABP=547.912;AC=48;AF=0.255319;AN=188;AO=2362;CIGAR=1X;DP=6212;DPB=6212;DPRA=1.67094;EPP=5132.03;EPPR=8361.01;GTI=9;LEN=1;MEANALT=1.01852;MQM=59.9945;MQMR=59.9974;NS=94;NUMALT=1;ODDS=0.690642;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=83118;QR=137963;RO=3849;RPL=0;RPP=5132.03;RPPR=8361.01;RPR=2362;RUN=1;SAF=0;SAP=5132.03;SAR=2362;SRF=0;SRP=8361.01;SRR=3849;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/1:39:14,25:14:504:25:892:-68.8595,0,-33.9579	0/1:100:25,75:25:892:75:2662:-209.723,0,-50.4967	0/0:76:75,1:75:2683:1:36:0,-19.28,-238.116	0/1:54:10,44:10:360:44:1529:-121.643,0,-16.4887	0/1:50:12,38:12:428:38:1347:-106.478,0,-23.8073	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.953	0/1:169:40,129:40:1432:129:4491:-353.493,0,-78.3035	0/1:109:30,79:30:1064:79:2786:-218.17,0,-63.2594	0/0:87:86,1:86:3063:1:36:0,-22.5913,-272.301	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/1:76:39,37:39:1404:37:1311:-95.4126,0,-103.781	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:41:22,19:22:792:19:675:-48.7347,0,-59.2634	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:124:40,84:40:1440:84:2952:-228.584,0,-92.57	0/1:172:87,85:87:3101:85:2967:-215.488,0,-227.539	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/0:59:55,4:55:1957:4:140:0,-4.81619,-163.459	0/0:45:42,3:42:1508:3:104:0,-3.84354,-126.312	0/1:52:7,45:7:248:45:1586:-127.375,0,-7.01063	0/1:306:93,213:93:3336:213:7551:-587.522,0,-208.342	0/0:131:131,0:131:4696:0:0:0,-39.4349,-422.8	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:166:73,93:73:2615:93:3295:-246.798,0,-185.626	0/1:94:37,57:37:1328:57:2004:-152.334,0,-91.5254	0/1:58:17,41:17:608:41:1456:-113.876,0,-37.5923	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:148:73,75:73:2620:75:2660:-195.095,0,-191.495	0/1:168:51,117:51:1832:117:4119:-320.325,0,-114.588	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:43:43,0:43:1535:0:0:0,-12.9443,-138.442	0/0:39:39,0:39:1383:0:0:0,-11.7402,-124.768	0/1:43:18,25:18:648:25:873:-65.9402,0,-45.7076	0/1:131:24,107:24:864:107:3754:-298.625,0,-38.6476	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:77:77,0:77:2756:0:0:0,-23.1793,-248.282	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:77:45,32:45:1620:32:1152:-80.8108,0,-122.911	0/1:96:38,57:38:1360:57:1997:-151.045,0,-93.743	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:39:37,2:37:1323:2:72:0,-4.90345,-112.535	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:135:45,90:45:1620:90:3158:-243.804,0,-105.451	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:59:59,0:59:2107:0:0:0,-17.7608,-189.899	0/1:60:27,33:27:964:33:1155:-86.1938,0,-69.015	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:215:214,1:214:7676:1:36:0,-61.1232,-687.261	0/1:176:65,111:65:2336:111:3899:-298.124,0,-157.518	0/1:60:52,8:52:1859:8:265:-6.11028,0,-149.527	0/1:45:12,33:12:428:33:1149:-90.1673,0,-25.3125	0/1:117:46,71:46:1656:71:2476:-187.872,0,-114.108	0/0:84:84,0:84:3020:0:0:0,-25.2865,-272.03	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6642	0/1:47:6,41:6:216:41:1435:-115.294,0,-5.6421	0/1:33:17,16:17:612:16:567:-41.4267,0,-45.4794	0/1:13:8,5:8:284:5:176:-12.2716,0,-21.99	0/0:113:113,0:113:4051:0:0:0,-34.0164,-364.776	0/1:90:51,39:51:1820:39:1376:-97.046,0,-136.989	0/1:136:44,92:44:1576:92:3229:-249.892,0,-101.191	0/0:150:150,0:150:5384:0:0:0,-45.1545,-484.69	0/0:40:40,0:40:1428:0:0:0,-12.0412,-128.818	0/1:110:53,57:53:1896:57:1994:-146.618,0,-137.805	1/1:10:0,10:0:0:10:351:-31.9267,-3.0103,0	0/0:62:60,2:60:2156:2:72:0,-11.8271,-187.47	0/1:122:34,88:34:1224:88:3096:-242.143,0,-73.7414	0/0:106:106,0:106:3800:0:0:0,-31.9092,-342.197	0/0:69:69,0:69:2484:0:0:0,-20.7711,-223.813	0/1:54:23,31:23:828:31:1087:-81.8828,0,-58.5885	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:106:106,0:106:3791:0:0:0,-31.9092,-341.388	0/1:17:10,7:10:360:7:243:-17.09,0,-27.6268	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:60:24,36:24:860:36:1284:-97.8016,0,-59.66	0/1:13:5,8:5:180:8:284:-21.99,0,-12.6387	0/1:54:25,29:25:896:29:991:-73.2398,0,-64.7047	0/1:56:14,42:14:500:42:1488:-117.357,0,-28.4785	0/0:135:135,0:135:4848:0:0:0,-40.639,-436.472	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303
chr12	22866564	.	A	G	49590.5	PASS	AB=0.522171;ABP=26.2157;AC=51;AF=0.271277;AN=188;AO=2867;CIGAR=1X;DP=10343;DPB=10343;DPRA=1.40221;EPP=6056.12;EPPR=15642.8;GTI=0;LEN=1;MEANALT=1.08929;MQM=59.984;MQMR=59.9885;NS=94;NUMALT=1;ODDS=1.38523;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=102254;QR=267390;RO=7468;RPL=20;RPP=6056.12;RPPR=15651.4;RPR=2847;RUN=1;SAF=2867;SAP=6228.62;SAR=0;SRF=7467;SRP=16210.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:231:114,117:114:4073:117:4196:-308.283,0,-297.217	0/1:170:84,86:84:3012:86:3064:-224.813,0,-220.136	0/0:310:310,0:310:11078:0:0:0,-93.3193,-996.911	0/1:82:32,49:32:1148:49:1764:-134.3,0,-78.8866	0/1:68:29,39:29:1040:39:1389:-104.839,0,-73.4443	0/0:169:168,0:168:6009:0:0:0,-50.573,-540.554	0/1:153:84,69:84:3008:69:2471:-176.586,0,-224.894	0/1:114:87,27:87:3097:27:972:-53.4805,0,-244.631	0/0:130:130,0:130:4656:0:0:0,-39.1339,-419.201	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:75:37,38:37:1332:38:1364:-100.483,0,-97.6051	0/0:74:74,0:74:2664:0:0:0,-22.2762,-240.005	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.62	0/0:94:93,1:93:3336:1:36:0,-24.6985,-296.859	0/1:64:28,36:28:1008:36:1255:-93.9827,0,-71.7704	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.303	0/0:87:87,0:87:3116:0:0:0,-26.1896,-280.667	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:195:92,102:92:3288:102:3632:-268.325,0,-237.38	0/1:232:91,141:91:3245:141:5034:-383.361,0,-222.431	0/0:74:74,0:74:2656:0:0:0,-22.2762,-239.286	0/0:113:113,0:113:4029:0:0:0,-34.0164,-362.798	0/0:72:67,5:67:2408:5:180:0,-5.12209,-200.424	0/1:90:36,54:36:1277:54:1938:-147.604,0,-88.1384	0/1:407:206,201:206:7361:201:7161:-522.006,0,-540.019	0/0:264:263,0:263:9413:0:0:0,-79.1709,-846.77	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:331:143,188:143:5128:188:6711:-504.367,0,-362.02	0/1:56:35,21:35:1248:21:756:-51.5095,0,-95.7672	0/1:120:53,67:53:1904:67:2382:-178.513,0,-135.514	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:219:112,107:112:4020:107:3833:-279.239,0,-296.062	0/1:182:74,108:74:2660:108:3839:-290.921,0,-184.858	0/0:65:65,0:65:2332:0:0:0,-19.5669,-210.14	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/0:180:179,1:179:6436:1:36:0,-50.5871,-575.725	0/0:41:41,0:41:1476:0:0:0,-12.3422,-133.136	0/0:113:113,0:113:4052:0:0:0,-34.0164,-364.867	0/0:88:87,0:87:3115:0:0:0,-26.1896,-280.216	0/1:74:37,37:37:1328:37:1304:-95.3824,0,-97.546	0/1:109:49,60:49:1764:60:2137:-159.786,0,-126.231	0/0:181:181,0:181:6492:0:0:0,-54.4864,-584.363	0/0:207:206,1:206:7320:1:36:0,-58.7149,-655.251	0/0:120:120,0:120:4304:0:0:0,-36.1236,-387.536	0/1:164:77,87:77:2764:87:3105:-230.307,0,-199.632	0/1:176:81,95:81:2889:95:3412:-254.312,0,-207.264	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:160:75,84:75:2692:84:2995:-221.558,0,-194.301	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:172:93,79:93:3317:79:2792:-199.745,0,-246.97	0/0:88:88,0:88:3134:0:0:0,-26.4906,-282.283	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:73:73,0:73:2628:0:0:0,-21.9752,-236.766	0/1:103:45,58:45:1620:58:2071:-155.654,0,-115.084	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:154:154,0:154:5466:0:0:0,-46.3586,-492.07	0/1:232:124,108:124:4445:108:3872:-278.835,0,-329.889	0/0:90:84,6:84:3004:6:187:0,-9.9563,-253.41	0/1:140:61,79:61:2188:79:2832:-212.974,0,-155.041	0/1:198:100,98:100:3596:98:3501:-255.693,0,-264.241	0/0:170:167,3:167:5941:3:108:0,-41.0999,-524.726	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:133:61,72:61:2192:72:2576:-192.053,0,-157.508	0/1:86:40,46:40:1436:46:1648:-122.72,0,-103.649	0/1:10:2,8:2:68:8:284:-22.8931,0,-3.44741	0/0:132:132,0:132:4744:0:0:0,-39.736,-427.116	0/1:88:43,45:43:1548:45:1600:-117.797,0,-113.122	0/1:174:75,98:75:2669:98:3468:-259.894,0,-188.017	0/0:221:218,2:218:7816:2:72:0,-59.7497,-696.631	0/0:119:119,0:119:4240:0:0:0,-35.8226,-381.779	0/1:110:52,58:52:1860:58:2065:-153.007,0,-134.566	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:152:151,1:151:5424:1:36:0,-42.1583,-484.689	0/1:193:83,110:83:2960:110:3913:-294.265,0,-208.533	0/0:341:340,1:340:12185:1:36:0,-99.0529,-1091.96	0/0:91:91,0:91:3240:0:0:0,-27.3937,-291.82	0/1:57:26,31:26:936:31:1112:-83.2326,0,-67.4008	0/0:118:118,0:118:4236:0:0:0,-35.5215,-381.418	0/0:157:157,0:157:5623:0:0:0,-47.2617,-506.19	0/1:49:28,21:28:1000:21:743:-52.4429,0,-75.5649	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.411	0/1:67:38,29:38:1368:29:1027:-72.5732,0,-103.252	0/1:13:9,4:9:320:4:135:-8.56912,0,-25.229	0/1:44:26,18:26:928:18:648:-45.4066,0,-70.5929	0/1:75:20,55:20:716:55:1954:-153.557,0,-42.1905	0/0:75:75,0:75:2692:0:0:0,-22.5772,-242.524	0/0:132:132,0:132:4740:0:0:0,-39.736,-426.757
chr12	22866612	.	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chr12	22940232	.	CGA	AGA	175983	PASS	AB=0.495675;ABP=3.93064;AC=140;AF=0.752688;AN=186;AO=8426;CIGAR=1X2M;DP=11402;DPB=11403;DPRA=35.7771;EPP=18299.8;EPPR=6146.11;GTI=1;LEN=1;MEANALT=1.93407;MQM=59.7185;MQMR=59.8878;NS=93;NUMALT=1;ODDS=0.363138;PAIRED=0;PAIREDR=0;PAO=2;PQA=72;PQR=0;PRO=0;QA=300311;QR=88479;RO=2833;RPL=8426;RPP=18299.8;RPPR=6146.11;RPR=0;RUN=1;SAF=8426;SAP=18299.8;SAR=0;SRF=2833;SRP=6154.79;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1504:-135.652,-12.6433,0	0/1:174:72,101:72:2310:101:3620:-273.566,0,-155.718	0/1:130:75,53:75:2291:53:1896:-132.065,0,-167.594	1/1:226:0,225:0:0:225:8039:-723.197,-67.7318,0	0/1:78:40,36:40:1262:36:1275:-91.8485,0,-90.6677	0/1:28:18,10:18:573:10:360:-24.3155,0,-43.4433	1/1:117:0,117:0:0:117:4161:-374.635,-35.2205,0	0/1:222:111,109:111:3410:109:3869:-281.897,0,-240.639	0/1:90:54,35:54:1700:35:1260:-86.4843,0,-126.121	1/1:138:0,137:0:0:137:4888:-439.779,-41.2411,0	1/1:60:0,57:0:0:57:2021:-181.858,-17.1587,0	0/1:85:49,35:49:1401:35:1248:-87.055,0,-100.787	1/1:90:0,86:0:0:86:3056:-274.959,-25.8886,0	1/1:85:0,79:0:0:79:2820:-253.74,-23.7814,0	1/1:80:0,79:0:0:79:2814:-253.226,-23.7814,0	0/1:64:42,22:42:1304:22:779:-51.1661,0,-98.3729	1/1:83:0,83:0:0:83:2925:-263.48,-24.9855,0	1/1:61:0,61:0:0:61:2192:-197.536,-18.3628,0	1/1:44:1,43:1:28:43:1520:-134.29,-10.4456,0	0/1:274:130,140:130:4103:140:4968:-365.543,0,-287.855	0/1:237:123,108:123:3797:108:3845:-276.383,0,-272.173	1/1:151:1,148:1:28:148:5284:-472.822,-42.3337,0	1/1:106:0,105:0:0:105:3776:-339.678,-31.6082,0	1/1:147:9,133:9:296:133:4746:-400.344,-16.0859,0	0/1:107:52,54:52:1611:54:1913:-140.285,0,-113.112	0/1:426:191,233:191:5957:233:8282:-617.114,0,-408.384	1/1:266:0,262:0:0:262:9343:-840.436,-78.8699,0	1/1:44:0,44:0:0:44:1560:-140.618,-13.2453,0	0/1:242:142,96:142:4459:96:3415:-235.642,0,-329.588	0/1:172:87,84:87:2723:84:2999:-218.169,0,-193.558	0/1:149:64,85:64:2031:85:3030:-228.062,0,-138.042	0/0:2:2,0:2:67:0:0:0,-0.60206,-6.36284	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:360:-32.7425,-3.0103,0	0/1:5:1,4:1:27:4:143:-11.7146,0,-1.19463	0/0:5:5,0:5:154:0:0:0,-1.50515,-14.1649	0/1:236:117,113:117:3643:113:3999:-290.551,0,-258.581	1/1:331:0,323:0:0:323:11406:-1026.01,-97.2327,0	1/1:61:0,61:0:0:61:2184:-196.825,-18.3628,0	.:.:.:.:.:.:.:.	1/1:137:0,133:0:0:133:4747:-427.089,-40.037,0	1/1:31:0,31:0:0:31:1086:-98.045,-9.33193,0	1/1:150:0,145:0:0:145:5178:-465.844,-43.6494,0	1/1:116:0,113:0:0:113:4030:-362.577,-34.0164,0	0/1:80:37,42:37:1096:42:1504:-111.597,0,-74.8634	0/1:154:88,66:88:2818:66:2372:-167.378,0,-207.396	1/1:115:0,113:0:0:113:4009:-360.708,-34.0164,0	1/1:197:0,194:0:0:194:6931:-623.551,-58.3998,0	1/1:164:1,162:1:23:162:5763:-516.448,-47.0229,0	0/1:171:64,102:64:2043:102:3628:-276.23,0,-133.838	0/1:237:106,131:106:3285:131:4692:-351.09,0,-224.406	1/1:5:0,5:0:0:5:175:-16.0903,-1.50515,0	0/1:176:68,106:68:2143:106:3789:-288.569,0,-140.495	1/1:57:0,57:0:0:57:2035:-183.414,-17.1587,0	0/1:17:12,5:12:378:5:180:-11.4346,0,-29.2073	0/1:173:99,74:99:2992:74:2629:-184.771,0,-217.442	1/1:28:0,27:0:0:27:949:-85.4356,-8.12781,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:14:0,14:0:0:14:488:-44.2501,-4.21442,0	1/1:92:1,88:1:21:88:3139:-280.507,-24.9192,0	0/1:129:51,75:51:1592:75:2674:-202.677,0,-105.326	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:294:0,292:0:0:292:10437:-938.911,-87.9008,0	0/1:239:122,116:122:3892:116:4124:-299.413,0,-278.6	1/1:87:8,79:8:257:79:2823:-230.858,-2.79846,0	0/1:101:57,44:57:1733:44:1576:-111.722,0,-125.797	0/1:154:72,80:72:2326:80:2860:-211.59,0,-163.562	1/1:317:2,309:2:60:309:11024:-986.229,-88.2131,0	1/1:27:0,26:0:0:26:932:-83.9402,-7.82678,0	0/1:139:77,61:77:2447:61:2187:-155.269,0,-178.66	0/1:99:54,45:54:1685:45:1583:-112.957,0,-122.122	0/1:19:9,10:9:281:10:360:-27.0247,0,-19.8761	1/1:85:0,85:0:0:85:3044:-274.187,-25.5876,0	0/1:99:56,42:56:1754:42:1508:-106.242,0,-128.359	0/1:209:95,111:95:3074:111:3976:-295.709,0,-214.578	1/1:239:2,235:2:47:235:8372:-748.861,-67.1492,0	1/1:162:0,159:0:0:159:5618:-505.395,-47.8638,0	0/1:184:80,102:80:2483:102:3614:-270.204,0,-168.647	0/1:8:2,5:2:56:5:180:-14.2141,0,-2.98235	1/1:191:0,191:0:0:191:6800:-611.909,-57.4967,0	0/1:139:69,68:69:2118:68:2421:-176.66,0,-149.397	1/1:235:1,229:1:36:229:8195:-733.904,-65.9808,0	1/1:150:2,147:2:67:147:5244:-465.704,-38.842,0	0/1:75:42,33:42:1343:33:1188:-84.649,0,-98.579	1/1:121:0,120:0:0:120:4266:-383.742,-36.1236,0	1/1:215:0,213:0:0:213:7613:-684.859,-64.1194,0	0/1:44:18,26:18:567:26:928:-70.5811,0,-38.0851	1/1:86:0,86:0:0:86:3075:-276.944,-25.8886,0	0/1:88:49,39:49:1496:39:1404:-100.168,0,-108.425	0/1:42:12,29:12:378:29:1040:-81.2865,0,-21.6998	0/1:88:36,52:36:1052:52:1860:-141.189,0,-68.4642	0/1:82:54,26:54:1725:26:924:-59.1508,0,-131.207	1/1:147:0,147:0:0:147:5247:-472.184,-44.2514,0	1/1:110:1,107:1:36:107:3814:-339.784,-29.2727,0
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chr12	22940471	.	T	C	116970	PASS	AB=0.456056;ABP=72.6694;AC=139;AF=0.747312;AN=186;AO=5627;CIGAR=1X;DP=7912;DPB=7912;DPRA=28.6558;EPP=12187.2;EPPR=4938.78;GTI=3;LEN=1;MEANALT=1.04348;MQM=59.9938;MQMR=59.9605;NS=93;NUMALT=1;ODDS=1.58416;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=201223;QR=81836;RO=2281;RPL=5623;RPP=12187.2;RPPR=4938.78;RPR=4;RUN=1;SAF=0;SAP=12221.9;SAR=5627;SRF=0;SRP=4956.14;SRR=2281;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:51:0,50:0:0:50:1792:-161.242,-15.0515,0	0/1:70:36,34:36:1296:34:1220:-89.0347,0,-95.8718	0/1:159:98,61:98:3516:61:2186:-149.142,0,-268.785	1/1:140:0,140:0:0:140:5009:-450.955,-42.1442,0	0/1:52:23,29:23:820:29:1040:-78.2608,0,-58.469	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	1/1:75:0,74:0:0:74:2642:-237.666,-22.2762,0	0/1:130:78,52:78:2804:52:1864:-128.906,0,-213.465	0/1:104:51,53:51:1836:53:1892:-139.251,0,-134.024	1/1:74:0,74:0:0:74:2645:-238.295,-22.2762,0	1/1:72:0,72:0:0:72:2561:-230.74,-21.6742,0	0/1:90:44,46:44:1584:46:1640:-120.796,0,-115.759	1/1:77:0,77:0:0:77:2752:-247.922,-23.1793,0	1/1:95:0,95:0:0:95:3384:-304.757,-28.5979,0	1/1:64:0,64:0:0:64:2295:-206.81,-19.2659,0	0/1:62:32,30:32:1152:30:1063:-77.317,0,-85.3263	1/1:52:0,52:0:0:52:1859:-167.589,-15.6536,0	1/1:32:0,32:0:0:32:1137:-102.638,-9.63296,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:147:71,76:71:2537:76:2720:-200.791,0,-184.328	0/1:127:56,71:56:2012:71:2556:-192.059,0,-143.122	1/1:100:0,100:0:0:100:3576:-322.048,-30.103,0	1/1:131:3,128:3:108:128:4583:-402.56,-29.3598,0	1/1:71:6,65:6:212:65:2328:-190.353,-1.94833,0	0/1:87:47,40:47:1692:40:1436:-103.348,0,-126.377	0/1:269:164,105:164:5869:105:3737:-255.555,0,-447.342	1/1:208:1,207:1:36:207:7396:-662.089,-59.016,0	1/1:29:0,29:0:0:29:1028:-92.833,-8.72987,0	0/1:251:140,111:140:5040:111:3980:-282.831,0,-378.184	0/1:113:60,53:60:2160:53:1904:-137.621,0,-160.65	0/1:78:42,36:42:1504:36:1279:-91.9322,0,-112.174	0/1:11:9,2:9:324:2:68:-3.14638,0,-26.1945	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:168:78,90:78:2804:90:3236:-240.888,0,-201.249	1/1:93:0,93:0:0:93:3300:-297.219,-27.9958,0	1/1:50:0,50:0:0:50:1783:-160.751,-15.0515,0	0/1:6:1,5:1:36:5:178:-14.5625,0,-1.79209	1/1:82:0,82:0:0:82:2932:-264.115,-24.6845,0	1/1:16:0,16:0:0:16:567:-51.3607,-4.81648,0	1/1:108:0,108:0:0:108:3852:-346.877,-32.5112,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	0/1:45:27,18:27:972:18:648:-45.1055,0,-74.2516	0/1:104:45,58:45:1608:58:2061:-154.452,0,-113.703	1/1:120:3,117:3:108:117:4200:-368.105,-26.0484,0	1/1:118:0,118:0:0:118:4186:-376.922,-35.5215,0	1/1:97:0,97:0:0:97:3462:-311.791,-29.1999,0	0/1:111:63,48:63:2268:48:1720:-121.671,0,-170.968	0/1:147:72,75:72:2584:75:2692:-198.273,0,-188.557	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:189:120,69:120:4320:69:2476:-166.199,0,-332.079	1/1:80:1,79:1:36:79:2820:-250.441,-20.4841,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:121:69,52:69:2469:52:1856:-130.895,0,-186.037	1/1:71:1,70:1:36:70:2512:-222.734,-17.7749,0	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:45:0,45:0:0:45:1620:-146.09,-13.5464,0	0/1:138:73,65:73:2628:65:2332:-168.597,0,-195.224	.:.:.:.:.:.:.:.	1/1:133:0,133:0:0:133:4764:-428.917,-40.037,0	0/1:168:110,58:110:3911:58:2080:-136.897,0,-301.607	1/1:48:2,46:2:72:46:1648:-141.772,-7.61272,0	0/1:57:34,23:34:1224:23:824:-57.3246,0,-93.3083	0/1:203:119,84:119:4272:84:2972:-206.604,0,-323.548	1/1:185:0,185:0:0:185:6628:-596.598,-55.6906,0	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	0/1:19:14,5:14:500:5:180:-10.8325,0,-39.6166	0/1:48:24,24:24:860:24:864:-63.6331,0,-63.2724	0/1:37:14,23:14:485:23:828:-63.706,0,-32.8389	1/1:160:0,160:0:0:160:5718:-514.738,-48.1648,0	0/1:90:32,58:32:1144:58:2080:-160.378,0,-76.1768	0/1:198:104,93:104:3725:93:3305:-238.006,0,-275.786	1/1:113:0,113:0:0:113:4043:-364.056,-34.0164,0	1/1:116:1,115:1:36:115:4099:-365.498,-31.3212,0	0/1:78:45,33:45:1620:33:1180:-83.0277,0,-122.61	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:61:2,59:2:68:59:2120:-184.611,-11.9051,0	0/1:84:62,22:62:2232:22:788:-45.9583,0,-175.857	1/1:196:0,196:0:0:196:6994:-629.524,-59.0019,0	1/1:42:1,41:1:36:41:1468:-129.228,-9.45564,0	0/1:71:34,37:34:1220:37:1332:-98.8093,0,-88.7337	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	1/1:136:0,136:0:0:136:4884:-439.702,-40.9401,0	0/1:19:10,9:10:360:9:315:-22.9677,0,-27.0247	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:69:37,32:37:1324:32:1148:-82.8588,0,-98.6773	0/1:37:15,22:15:532:22:792:-60.4676,0,-37.075	0/1:95:44,51:44:1580:51:1820:-135.483,0,-113.894	0/1:61:43,18:43:1544:18:640:-39.5665,0,-120.89	1/1:97:0,97:0:0:97:3456:-311.253,-29.1999,0	1/1:72:0,72:0:0:72:2584:-232.809,-21.6742,0
chr12	22975660	.	AGCG	TGCG,TGCA	363762	PASS	AB=0.562278,0.432162;ABP=154.472,182.727;AC=150,38;AF=0.797872,0.202128;AN=188;AO=14476,2018;CIGAR=1X3M,1X2M1X;DP=16578;DPB=16578.2;DPRA=0,1.26281;EPP=31419.9,4385.04;EPPR=19.0002;GTI=2;LEN=1,4;MEANALT=2.23404,2.61538;MQM=59.9912,59.5456;MQMR=57.6364;NS=94;NUMALT=2;ODDS=5.64994;PAIRED=0,0;PAIREDR=0;PAO=0,1;PQA=0,36;PQR=0;PRO=0;QA=517782,71273;QR=316;RO=11;RPL=2,0;RPP=31419.9,4385.04;RPPR=19.0002;RPR=14474,2018;RUN=1,1;SAF=14476,2018;SAP=31437.2,4385.04;SAR=0,0;SRF=11;SRP=26.8965;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:72:0,72,0:0:0:72,0:2571,0:-231.628,-21.6742,0,-231.628,-21.6742,-231.628	1/2:61:0,31,29:0:0:31,29:1112,1038:-175.118,-84.4168,-75.0848,-90.6996,0,-81.9698	1/2:119:0,78,40:0:0:78,40:2804,1414:-343.901,-115.138,-91.6575,-228.759,0,-216.718	1/1:202:0,201,0:0:0:201,0:7205,0:-648.142,-60.507,0,-648.142,-60.507,-648.142	1/2:58:0,39,19:0:0:39,19:1400,671:-169.201,-54.9969,-43.2568,-114.559,0,-108.839	1/2:55:0,29,26:0:0:29,26:1044,913:-159.841,-74.651,-65.9211,-85.5449,0,-77.7182	1/1:94:0,94,0:0:0:94,0:3357,0:-302.346,-28.2968,0,-302.346,-28.2968,-302.346	1/2:115:0,51,63:0:0:51,63:1824,2223:-329.765,-181.031,-165.679,-148.837,0,-129.872	1/2:96:0,43,51:0:0:43,51:1548,1801:-272.919,-146.607,-133.663,-126.314,0,-110.961	1/1:81:0,80,0:0:0:80,0:2849,0:-256.287,-24.0824,0,-256.287,-24.0824,-256.287	1/1:469:0,468,0:0:0:468,0:16732,0:-1505.25,-140.882,0,-1505.25,-140.882,-1505.25	1/2:114:0,48,66:0:0:48,66:1720,2312:-328.743,-188.462,-174.013,-140.635,0,-120.767	1/1:111:0,109,0:0:0:109,0:3912,0:-351.942,-32.8123,0,-351.942,-32.8123,-351.942	1/1:80:0,79,0:0:0:79,0:2820,0:-253.679,-23.7814,0,-253.679,-23.7814,-253.679	1/1:59:0,59,0:0:0:59,0:2111,0:-190.258,-17.7608,0,-190.258,-17.7608,-190.258	1/2:99:0,47,51:0:0:47,51:1692,1803:-284.889,-146.827,-132.679,-138.068,0,-122.716	1/1:35:0,35,0:0:0:35,0:1260,0:-113.705,-10.5361,0,-113.705,-10.5361,-113.705	1/1:32:0,32,0:0:0:32,0:1143,0:-103.179,-9.63296,0,-103.179,-9.63296,-103.179	1/1:155:1,154,0:1:25:154,0:5527,0:-494.826,-44.1598,0,-495.127,-46.3586,-497.075	1/2:112:0,60,52:0:0:60,52:2148,1835:-324.894,-149.724,-131.662,-175.526,0,-159.872	1/2:156:0,80,76:0:0:80,76:2876,2680:-453.183,-218.545,-194.463,-234.994,0,-212.115	1/1:102:1,100,0:1:36:100,0:3592,0:-319.887,-27.1656,0,-320.188,-30.103,-323.126	1/1:114:0,114,0:0:0:114,0:4043,0:-364.058,-34.3174,0,-364.058,-34.3174,-364.058	1/1:68:0,68,0:0:0:68,0:2404,0:-216.615,-20.47,0,-216.615,-20.47,-216.615	1/2:77:0,42,35:0:0:42,35:1492,1235:-222.305,-100.727,-88.0835,-121.931,0,-111.395	1/2:205:0,105,99:0:0:105,99:3772,3498:-592.48,-284.765,-253.157,-307.77,0,-277.968	1/1:277:0,275,0:0:0:275,0:9827,0:-884.098,-82.7833,0,-884.098,-82.7833,-884.098	1/1:28:0,28,0:0:0:28,0:988,0:-89.2333,-8.42884,0,-89.2333,-8.42884,-89.2333	1/2:254:1,129,122:1:23:129,122:4605,4332:-726.357,-351.231,-314.166,-373.718,0,-338.76	1/2:161:0,85,75:0:0:85,75:3046,2680:-467.03,-218.605,-193.017,-248.54,0,-225.963	1/2:125:0,81,44:0:0:81,44:2893,1532:-360.782,-124.912,-100.528,-236.221,0,-222.976	1/1:252:1,250,0:1:32:250,0:8922,0:-799.743,-72.6991,0,-800.044,-75.2575,-802.622	1/1:798:0,793,0:0:0:793,0:28398,0:-2554.6,-238.717,0,-2554.6,-238.717,-2554.6	1/1:458:1,453,3:1:36:453,3:16182,107:-1452.45,-133.429,0,-1444.03,-127.646,-1446.07	1/1:882:1,874,4:1:29:874,4:31166,144:-2801.06,-260.797,0,-2789.61,-251.322,-2790.71	1/1:713:1,707,4:1:26:707,4:25308,144:-2274.33,-210.806,0,-2262.88,-201.045,-2263.71	1/2:191:0,87,104:0:0:87,104:3120,3678:-554.322,-299.842,-273.652,-254.837,0,-223.529	1/1:127:0,127,0:0:0:127,0:4556,0:-410.205,-38.2308,0,-410.205,-38.2308,-410.205	1/1:328:0,326,1:0:0:326,1:11675,27:-1050.36,-98.1358,0,-1048.24,-95.977,-1047.93	1/1:195:0,195,0:0:0:195,0:6956,0:-626.106,-58.7009,0,-626.106,-58.7009,-626.106	1/1:92:0,92,0:0:0:92,0:3278,0:-295.237,-27.6948,0,-295.237,-27.6948,-295.237	1/1:191:0,190,1:0:0:190,1:6809,36:-612.496,-57.1957,0,-609.559,-53.8985,-609.258	1/1:220:0,219,0:0:0:219,0:7851,0:-706.255,-65.9256,0,-706.255,-65.9256,-706.255	1/1:53:0,52,1:0:0:52,1:1863,36:-167.589,-15.6536,0,-164.651,-12.3563,-164.35	1/2:64:0,29,34:0:0:29,34:1044,1203:-183.155,-97.9674,-89.2375,-85.1851,0,-74.9501	1/2:138:0,69,68:0:0:69,68:2460,2409:-396.874,-196.345,-175.574,-200.632,0,-180.162	1/1:59:0,59,0:0:0:59,0:2107,0:-189.899,-17.7608,0,-189.899,-17.7608,-189.899	1/1:136:0,135,0:0:0:135,0:4784,0:-430.436,-40.6391,0,-430.436,-40.6391,-430.436	1/1:93:0,93,0:0:0:93,0:3340,0:-300.816,-27.9958,0,-300.816,-27.9958,-300.816	1/2:93:0,52,41:0:0:52,41:1872,1440:-270.299,-117.548,-101.894,-153.106,0,-140.763	1/2:127:0,68,58:0:0:68,58:2444,2041:-365.503,-166.114,-145.643,-199.387,0,-181.927	1/1:642:0,640,1:0:0:640,1:22878,36:-2058.05,-192.659,0,-2055.11,-189.722,-2054.81	1/2:100:0,54,46:0:0:54,46:1940,1637:-292.025,-133.765,-117.509,-158.617,0,-144.77	1/1:78:0,77,0:0:0:77,0:2756,0:-247.922,-23.1793,0,-247.922,-23.1793,-247.922	1/1:278:1,271,6:1:30:271,6:9674,213:-867.57,-79.188,0,-850.681,-64.3449,-851.273	1/2:107:0,49,56:0: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chr12	22975684	.	C	T	29369.4	PASS	AB=0.432587;ABP=175.746;AC=38;AF=0.202128;AN=188;AO=1957;CIGAR=1X;DP=16175;DPB=16175;DPRA=1.10039;EPP=4097.67;EPPR=30861.8;GTI=2;LEN=1;MEANALT=1.05882;MQM=59.5268;MQMR=59.9849;NS=94;NUMALT=1;ODDS=13.0401;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69805;QR=505636;RO=14215;RPL=1938;RPP=4089.15;RPPR=30861.8;RPR=19;RUN=1;SAF=1956;SAP=4243.9;SAR=1;SRF=14215;SRP=30870.5;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:73:73,0:73:2604:0:0:0,-21.9752,-234.58	0/1:63:32,31:32:1132:31:1112:-81.1424,0,-83.2237	0/1:113:76,37:76:2736:37:1328:-85.8012,0,-212.465	0/0:199:199,0:199:7104:0:0:0,-59.905,-639.382	0/1:58:39,19:39:1384:19:672:-43.3462,0,-107.399	0/1:54:29,25:29:1028:25:880:-62.9813,0,-76.5774	0/0:90:90,0:90:3197:0:0:0,-27.0927,-287.953	0/1:112:48,64:48:1724:64:2258:-169.674,0,-121.73	0/1:92:42,50:42:1496:50:1788:-133.422,0,-107.24	0/0:81:81,0:81:2895:0:0:0,-24.3834,-260.786	0/0:460:459,1:459:16318:1:36:0,-134.876,-1464.69	0/1:109:46,63:46:1628:63:2231:-168.234,0,-113.996	0/0:109:109,0:109:3891:0:0:0,-32.8123,-350.385	0/0:76:76,0:76:2698:0:0:0,-22.8783,-243.064	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.872	0/1:97:46,51:46:1635:51:1819:-134.769,0,-118.238	0/0:35:35,0:35:1214:0:0:0,-10.536,-109.559	0/0:31:31,0:31:1086:0:0:0,-9.33193,-98.0476	0/0:148:148,0:148:5277:0:0:0,-44.5524,-475.067	0/1:109:59,50:59:2108:50:1780:-127.647,0,-157.177	0/1:148:75,73:75:2688:73:2584:-188.222,0,-197.455	0/0:101:100,1:100:3537:1:36:0,-26.8058,-314.94	0/0:116:116,0:116:4131:0:0:0,-34.9195,-371.976	0/0:64:64,0:64:2262:0:0:0,-19.2659,-203.842	0/1:75:41,34:41:1460:34:1220:-87.3019,0,-109.119	0/1:203:105,98:105:3745:98:3516:-255.336,0,-276.141	0/0:271:271,0:271:9671:0:0:0,-81.5791,-870.345	0/0:29:29,0:29:1026:0:0:0,-8.72987,-92.6513	0/1:247:128,119:128:4550:119:4238:-307.19,0,-335.314	0/1:163:88,75:88:3125:75:2654:-190.016,0,-232.408	0/1:121:79,42:79:2811:42:1492:-98.1362,0,-216.805	0/0:241:241,0:241:8565:0:0:0,-72.5482,-770.852	0/0:770:770,0:770:27370:0:0:0,-231.793,-2462.52	0/0:444:443,1:443:15813:1:36:0,-130.059,-1419.26	0/0:859:855,3:855:30408:3:104:0,-248.937,-2725.74	0/0:689:686,3:686:24389:3:108:0,-197.334,-2184.28	0/1:183:81,102:81:2897:102:3657:-274.143,0,-205.876	0/0:123:123,0:123:4329:0:0:0,-37.0267,-389.789	0/0:324:324,0:324:11512:0:0:0,-97.5337,-1035.96	0/0:191:191,0:191:6815:0:0:0,-57.4967,-613.424	0/0:96:96,0:96:3418:0:0:0,-28.8989,-307.834	0/0:183:183,0:183:6461:0:0:0,-55.0885,-581.558	0/0:218:218,0:218:7794:0:0:0,-65.6245,-701.49	0/0:52:51,1:51:1788:1:36:0,-12.0553,-157.601	0/1:62:30,32:30:1068:32:1120:-82.4273,0,-77.7682	0/1:135:69,66:69:2441:66:2368:-172.739,0,-179.305	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.63	0/0:136:136,0:136:4845:0:0:0,-40.9401,-436.205	0/0:95:95,0:95:3383:0:0:0,-28.5978,-304.676	0/1:93:51,42:51:1804:42:1508:-107.974,0,-134.643	0/1:128:68,60:68:2423:60:2156:-155.722,0,-179.794	0/0:635:635,0:635:22579:0:0:0,-191.154,-2031.53	0/1:99:53,46:53:1891:46:1652:-119.156,0,-140.657	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:279:273,6:273:9667:6:208:0,-65.0251,-851.024	0/1:103:49,54:49:1748:54:1905:-140.717,0,-126.598	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.136	0/0:438:431,7:431:15316:7:252:0,-108.822,-1355.14	0/0:562:562,0:562:20023:0:0:0,-169.179,-1801.59	0/0:101:101,0:101:3590:0:0:0,-30.404,-323.302	0/1:122:54,68:54:1936:68:2444:-183.461,0,-137.791	0/0:246:246,0:246:8782:0:0:0,-74.0534,-790.368	0/0:128:128,0:128:4553:0:0:0,-38.5318,-409.938	0/1:141:92,49:92:3288:49:1752:-115.487,0,-253.695	0/1:55:49,6:49:1752:6:216:-3.23386,0,-141.407	0/1:62:41,21:41:1454:21:756:-49.7034,0,-112.491	0/1:128:80,47:80:2864:47:1688:-113.762,0,-219.555	0/0:129:129,0:129:4596:0:0:0,-38.8329,-413.804	0/0:443:443,0:443:15734:0:0:0,-133.356,-1415.75	0/1:17:10,7:10:352:7:252:-17.9114,0,-26.9007	0/1:55:26,29:26:927:29:1044:-77.6477,0,-67.1907	0/0:329:323,5:323:11499:5:180:0,-82.5564,-1018.23	0/0:173:173,0:173:6139:0:0:0,-52.0782,-552.613	0/1:88:47,41:47:1667:41:1446:-103.909,0,-123.826	0/1:132:74,58:74:2629:58:2046:-144.608,0,-197.12	0/0:131:130,1:130:4660:1:36:0,-35.8367,-415.963	0/0:94:94,0:94:3343:0:0:0,-28.2968,-301.088	0/1:66:27,39:27:972:39:1396:-106.071,0,-67.9299	0/0:527:523,4:523:18631:4:144:0,-145.329,-1663.06	0/0:86:86,0:86:3084:0:0:0,-25.8886,-277.788	0/1:103:48,55:48:1707:55:1976:-146.891,0,-122.909	0/0:146:145,1:145:5170:1:36:0,-40.3521,-461.843	0/0:73:73,0:73:2559:0:0:0,-21.9752,-230.56	0/1:93:36,57:36:1266:57:2036:-155.502,0,-86.2453	0/0:57:57,0:57:1995:0:0:0,-17.1587,-179.821	0/0:134:134,0:134:4808:0:0:0,-40.338,-432.874	0/1:31:18,13:18:640:13:464:-32.7656,0,-48.5974	0/0:90:90,0:90:3185:0:0:0,-27.0927,-286.875	0/1:78:40,38:40:1432:38:1364:-99.5699,0,-105.697	0/0:327:297,30:297:10510:30:1060:0,-2.80598,-850.195	0/1:569:488,81:488:17297:81:2891:-89.1068,0,-1385.08	0/1:69:18,51:18:615:51:1824:-143.664,0,-34.8967	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:93:93,0:93:3296:0:0:0,-27.9958,-296.859
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chr12	22986559	.	G	C	43046.6	PASS	AB=0.480428;ABP=20.0949;AC=47;AF=0.252688;AN=186;AO=2489;CIGAR=1X;DP=10018;DPB=10018;DPRA=1.31807;EPP=5007.28;EPPR=15999.8;GTI=1;LEN=1;MEANALT=1.08929;MQM=60;MQMR=59.9956;NS=93;NUMALT=1;ODDS=0.814059;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=88909;QR=268318;RO=7522;RPL=47;RPP=5007.28;RPPR=15991.2;RPR=2442;RUN=1;SAF=0;SAP=5407.81;SAR=2489;SRF=1;SRP=16328.1;SRR=7521;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1107:0:0:0,-9.33193,-99.9402	0/1:241:119,122:119:4260:122:4371:-321.015,0,-311.028	0/1:112:61,51:61:2172:51:1812:-129.644,0,-162.031	0/0:130:130,0:130:4630:0:0:0,-39.1339,-416.864	0/1:52:39,13:39:1404:13:468:-26.8061,0,-111.006	0/1:38:17,21:17:612:21:733:-54.8514,0,-43.9743	0/0:197:197,0:197:7010:0:0:0,-59.3029,-630.967	0/1:141:71,70:71:2552:70:2516:-184.246,0,-187.485	0/1:116:60,56:60:2131:56:1992:-144.635,0,-157.138	0/0:177:177,0:177:6327:0:0:0,-53.2823,-569.522	0/0:43:43,0:43:1523:0:0:0,-12.9443,-137.362	0/1:73:38,35:38:1359:35:1251:-90.9191,0,-100.635	0/0:76:76,0:76:2717:0:0:0,-22.8783,-244.772	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:92:92,0:92:3299:0:0:0,-27.6948,-297.128	0/1:75:41,33:41:1459:33:1188:-84.5925,0,-108.969	0/0:93:93,0:93:3323:0:0:0,-27.9958,-299.288	0/0:77:77,0:77:2736:0:0:0,-23.1793,-246.481	0/0:20:20,0:20:690:0:0:0,-6.0206,-62.4168	0/1:182:112,70:112:4016:70:2508:-171.185,0,-306.841	0/1:181:89,92:89:3167:92:3261:-239.223,0,-230.769	0/0:85:85,0:85:3035:0:0:0,-25.5875,-273.38	0/0:98:96,2:96:3397:2:72:0,-22.6642,-299.11	0/0:166:159,7:159:5688:7:252:0,-26.942,-489.01	0/1:56:41,15:41:1464:15:536:-31.7171,0,-115.198	0/1:327:174,152:174:6206:152:5449:-392.042,0,-460.143	0/0:235:234,1:234:8349:1:36:0,-67.1438,-747.82	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:267:156,111:156:5568:111:3980:-278.015,0,-420.852	0/1:145:77,66:77:2730:66:2357:-168.98,0,-202.536	0/1:182:94,88:94:3368:88:3130:-227.138,0,-248.548	0/1:7:3,4:3:104:4:144:-11.2064,0,-7.5956	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/1:190:99,91:99:3528:91:3268:-237.144,0,-260.532	0/0:148:148,0:148:5268:0:0:0,-44.5524,-474.257	0/0:55:55,0:55:1948:0:0:0,-16.5566,-175.593	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:152:151,1:151:5405:1:36:0,-42.1583,-482.98	0/0:26:26,0:26:913:0:0:0,-7.82678,-82.484	0/0:139:139,0:139:4960:0:0:0,-41.8432,-446.551	0/0:98:98,0:98:3508:0:0:0,-29.5009,-315.93	0/1:93:47,46:47:1619:46:1622:-118.269,0,-117.996	0/1:83:47,36:47:1680:36:1292:-91.5983,0,-126.502	0/0:135:133,2:133:4768:2:72:0,-33.8023,-422.44	0/0:156:156,0:156:5595:0:0:0,-46.9607,-503.67	0/0:146:146,0:146:5203:0:0:0,-43.9504,-468.408	0/1:177:104,73:104:3732:73:2599:-180.876,0,-282.798	0/1:179:84,95:84:3000:95:3376:-250.171,0,-216.348	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/1:95:46,49:46:1631:49:1764:-130.446,0,-118.48	0/0:49:49,0:49:1732:0:0:0,-14.7505,-156.165	0/1:25:9,16:9:320:16:568:-43.9261,0,-21.6166	0/1:150:70,80:70:2474:80:2825:-209.335,0,-177.759	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:96:96,0:96:3409:0:0:0,-28.8989,-307.025	0/1:111:58,53:58:2072:53:1900:-137.864,0,-153.336	.:.:.:.:.:.:.:.	0/0:192:191,1:191:6776:1:36:0,-54.1995,-606.318	0/1:205:111,94:111:3953:94:3356:-240.544,0,-294.25	0/0:56:54,2:54:1923:2:72:0,-10.021,-166.51	0/1:107:51,56:51:1801:56:2004:-148.423,0,-130.16	0/1:264:134,130:134:4771:130:4623:-336.76,0,-350.078	0/0:100:98,2:98:3490:2:72:0,-23.2663,-307.474	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/1:86:44,42:44:1576:42:1500:-109.406,0,-116.243	0/1:107:54,53:54:1944:53:1899:-138.977,0,-143.026	0/1:16:8,8:8:284:8:288:-21.4509,0,-21.0869	0/0:108:108,0:108:3866:0:0:0,-32.5112,-348.134	0/1:91:45,46:45:1600:46:1652:-121.575,0,-116.896	0/1:237:110,127:110:3916:127:4536:-337.064,0,-281.288	0/0:189:189,0:189:6772:0:0:0,-56.8947,-609.552	0/0:110:109,0:109:3920:0:0:0,-32.8123,-352.631	0/1:164:77,87:77:2740:87:3111:-230.848,0,-197.472	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:104:103,1:103:3669:1:36:0,-27.7088,-326.815	0/1:135:88,47:88:3152:47:1675:-110.397,0,-243.266	0/0:298:296,1:296:10585:1:36:0,-86.0925,-949.038	0/0:112:112,0:112:3987:0:0:0,-33.7154,-359.019	0/1:74:39,35:39:1404:35:1251:-90.6181,0,-104.383	0/0:128:128,0:128:4541:0:0:0,-38.5318,-408.857	0/0:177:177,0:177:6284:0:0:0,-53.2823,-565.652	0/1:45:21,24:21:747:24:854:-63.6345,0,-54.008	0/0:68:68,0:68:2405:0:0:0,-20.47,-216.706	0/1:68:30,38:30:1063:38:1356:-101.87,0,-75.5108	0/1:50:26,24:26:936:24:864:-63.0311,0,-69.508	0/1:77:18,59:18:644:59:2114:-167.349,0,-35.1113	0/1:86:34,51:34:1216:51:1836:-139.573,0,-83.7993	0/0:177:177,0:177:6325:0:0:0,-53.2823,-569.312	0/0:133:133,0:133:4744:0:0:0,-40.037,-427.118
chr12	22994195	.	AGTTT	AGTTC	82487.1	PASS	AB=0.463162;ABP=35.9676;AC=142;AF=0.755319;AN=188;AO=4040;CIGAR=4M1X;DP=5588;DPB=5588.8;DPRA=30.0323;EPP=8767.08;EPPR=3273.25;GTI=1;LEN=1;MEANALT=1.41935;MQM=59.9545;MQMR=53.1873;NS=94;NUMALT=1;ODDS=0.235972;PAIRED=0;PAIREDR=0;PAO=1.5;PQA=54;PQR=36;PRO=1;QA=142417;QR=51795;RO=1506;RPL=1;RPP=8767.08;RPPR=3273.25;RPR=4039;RUN=1;SAF=0;SAP=8775.76;SAR=4040;SRF=0;SRP=3273.25;SRR=1506;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:36:0,35:0:0:35:1223:-110.118,-10.5361,0	0/1:58:34,24:34:1151:24:832:-57.7342,0,-86.2344	0/1:103:55,47:55:1905:47:1657:-118.351,0,-140.374	1/1:184:0,180:0:0:180:6351:-571.42,-54.1854,0	0/1:43:22,21:22:770:21:739:-53.8881,0,-56.6146	0/1:35:12,23:12:432:23:820:-63.5865,0,-28.5397	1/1:72:0,72:0:0:72:2537:-228.569,-21.6742,0	0/1:71:43,28:43:1468:28:1000:-68.9422,0,-110.663	0/1:63:35,28:35:1214:28:977:-69.2672,0,-90.3033	1/1:47:0,46:0:0:46:1633:-146.956,-13.8474,0	1/1:44:0,44:0:0:44:1538:-138.71,-13.2453,0	0/1:97:39,58:39:1345:58:2016:-152.509,0,-91.7485	1/1:61:0,61:0:0:61:2138:-192.685,-18.3628,0	1/1:38:0,38:0:0:38:1340:-120.897,-11.4391,0	1/1:56:0,56:0:0:56:1984:-178.832,-16.8577,0	0/1:45:21,24:21:727:24:856:-63.8148,0,-52.0612	1/1:26:0,26:0:0:26:907:-81.9433,-7.82678,0	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:24:0,24:0:0:24:841:-76.0064,-7.22472,0	0/1:104:49,55:49:1697:55:1938:-143.388,0,-121.181	0/1:104:63,41:63:2142:41:1446:-98.708,0,-160.829	1/1:66:2,64:2:67:64:2252:-196.627,-13.5534,0	1/1:81:1,80:1:36:80:2833:-251.611,-20.7869,0	1/1:41:3,38:3:99:38:1304:-108.418,-3.10722,0	0/1:43:22,21:22:762:21:747:-54.61,0,-55.7867	0/1:169:107,62:107:3665:62:2183:-145.86,0,-277.805	1/1:124:0,123:0:0:123:4369:-393.099,-37.0267,0	1/1:33:0,33:0:0:33:1158:-104.525,-9.93399,0	0/1:152:78,73:78:2699:73:2562:-185.012,0,-196.653	0/1:81:39,41:39:1340:41:1424:-104.109,0,-96.2556	0/1:81:32,49:32:1103:49:1738:-132.32,0,-74.2831	0/1:8:5,3:5:165:3:104:-7.29457,0,-12.7624	1/1:13:0,12:0:0:12:423:-38.0642,-3.61236,0	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	0/1:5:4,1:4:137:1:36:-2.09312,0,-11.0545	0/1:3:2,1:2:63:1:36:-2.69518,0,-5.05659	0/1:187:96,91:96:3319:91:3198:-231.751,0,-240.78	1/1:72:0,71:0:0:71:2532:-227.908,-21.3731,0	1/1:36:2,33:2:61:33:1135:-96.6626,-5.04125,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83347	1/1:55:0,55:0:0:55:1939:-174.784,-16.5567,0	1/1:25:0,24:0:0:24:830:-74.7035,-7.22472,0	1/1:86:3,83:3:96:83:2955:-257.229,-16.9338,0	1/1:59:0,59:0:0:59:2066:-186.208,-17.7608,0	0/1:40:23,17:23:799:17:592:-41.5085,0,-59.913	0/1:64:23,41:23:807:41:1442:-110.808,0,-53.4541	1/1:54:0,52:0:0:52:1860:-167.373,-15.6536,0	1/1:80:0,79:0:0:79:2803:-252.209,-23.7814,0	1/1:61:0,60:0:0:60:2122:-190.888,-18.0618,0	0/1:82:44,38:44:1505:38:1340:-96.2128,0,-110.537	0/1:77:49,28:49:1700:28:977:-65.0614,0,-129.615	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:47:22,25:22:744:25:887:-65.9997,0,-53.0208	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.59554	0/1:82:43,39:43:1482:39:1384:-100.173,0,-108.634	1/1:51:0,50:0:0:50:1792:-161.31,-15.0515,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:12:0,12:0:0:12:428:-38.8588,-3.61236,0	1/1:70:0,69:0:0:69:2441:-219.724,-20.7711,0	0/1:94:47,47:47:1620:47:1596:-115.624,0,-117.321	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:121:0,119:0:0:119:4229:-380.476,-35.8226,0	0/1:71:36,34:36:1270:34:1207:-87.6393,0,-92.9134	1/1:45:0,45:0:0:45:1595:-143.84,-13.5464,0	0/1:53:23,30:23:776:30:1072:-80.8379,0,-54.1175	0/1:66:38,28:38:1295:28:1004:-70.8079,0,-96.7057	1/1:106:0,105:0:0:105:3743:-336.751,-31.6082,0	1/1:34:0,34:0:0:34:1205:-108.754,-10.235,0	0/1:51:28,22:28:976:22:775:-54.6596,0,-72.471	0/1:37:22,15:22:744:15:524:-36.3515,0,-55.9504	0/1:10:8,2:8:271:2:72:-3.82642,0,-21.6399	1/1:63:1,62:1:36:62:2176:-192.508,-15.3676,0	0/1:56:36,20:36:1217:20:692:-45.7409,0,-92.5885	0/1:78:55,21:55:1924:21:741:-43.7948,0,-149.766	1/1:91:0,91:0:0:91:3220:-290.022,-27.3937,0	1/1:53:1,51:1:36:51:1780:-156.202,-12.4111,0	0/1:54:26,27:26:912:27:955:-69.9507,0,-65.9131	0/1:17:9,8:9:316:8:288:-21.1499,0,-23.6352	1/1:41:0,38:0:0:38:1356:-121.996,-11.4391,0	0/1:53:36,15:36:1242:15:512:-30.8101,0,-96.3851	1/1:102:0,100:0:0:100:3546:-319.072,-30.103,0	1/1:43:1,42:1:36:42:1481:-129.997,-9.35781,0	0/1:72:41,30:41:1415:30:1064:-74.4375,0,-105.591	1/1:40:0,40:0:0:40:1399:-126.204,-12.0412,0	1/1:135:0,133:0:0:133:4631:-416.717,-40.037,0	0/1:16:6,10:6:200:10:356:-27.5648,0,-13.4519	1/1:59:0,59:0:0:59:2062:-185.848,-17.7608,0	0/1:64:33,31:33:1112:31:1073:-77.6072,0,-80.8786	0/1:26:10,16:10:344:16:568:-43.6251,0,-23.4224	0/1:71:36,35:36:1235:35:1224:-89.0878,0,-89.7921	0/1:59:36,23:36:1174:23:798:-54.3758,0,-87.7534	1/1:70:0,68:0:0:68:2394:-215.46,-20.47,0	1/1:92:0,91:0:0:91:3194:-287.322,-27.3937,0
chr12	23025335	.	CG	TA,CA	119662	PASS	AB=0.631984,0.367611;ABP=376.736,379.032;AC=143,43;AF=0.768817,0.231183;AN=186;AO=4652,913;CIGAR=2X,1M1X;DP=5573;DPB=5573.5;DPRA=0,0.920497;EPP=10104.7,1985.56;EPPR=0;GTI=4;LEN=2,1;MEANALT=1.60215,2.02083;MQM=59.9804,59.966;MQMR=0;NS=93;NUMALT=2;ODDS=1.53183;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=18,18;PQR=0;PRO=0;QA=165565,32419;QR=0;RO=0;RPL=0,0;RPP=10104.7,1985.56;RPPR=0;RPR=4652,913;RUN=1,1;SAF=4652,913;SAP=10104.7,1985.56;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:56:0,56,0:0:0:56,0:2002,0:-180.453,-16.8577,0,-180.453,-16.8577,-180.453	1/2:44:0,36,8:0:0:36,8:1288,288:-128.886,-23.8592,-13.0221,-105.386,0,-102.978	1/2:81:0,44,37:0:0:44,37:1576,1328:-237.212,-108.684,-95.4388,-128.886,0,-117.748	1/1:160:0,160,0:0:0:160,0:5692,0:-512.345,-48.1648,0,-512.345,-48.1648,-512.345	1/1:18:0,17,1:0:0:17,1:610,36:-54.8731,-5.11751,0,-51.9356,-1.82027,-51.6346	1/2:41:0,32,9:0:0:32,9:1139,309:-118.27,-25.4305,-15.7976,-93.1851,0,-90.4759	1/1:51:0,50,1:0:0:50,1:1792,36:-161.203,-15.0515,0,-158.266,-11.7543,-157.965	1/2:109:0,74,35:0:0:74,35:2626,1207:-312.097,-98.3623,-76.0861,-214.083,0,-203.547	1/2:69:0,48,21:0:0:48,21:1711,752:-201.152,-61.6846,-47.2352,-139.825,0,-133.503	1/1:71:0,70,0:0:0:70,0:2516,0:-226.441,-21.0721,0,-226.441,-21.0721,-226.441	1/1:13:0,13,0:0:0:13,0:468,0:-42.4596,-3.91339,0,-42.4596,-3.91339,-42.4596	1/2:57:0,32,25:0:0:32,25:1150,900:-167.613,-73.7953,-64.1623,-94.1771,0,-86.6514	1/1:42:0,42,0:0:0:42,0:1486,0:-134.032,-12.6433,0,-134.032,-12.6433,-134.032	1/1:27:0,27,0:0:0:27,0:937,0:-84.6393,-8.12781,0,-84.6393,-8.12781,-84.6393	1/1:43:0,43,0:0:0:43,0:1538,0:-138.713,-12.9443,0,-138.713,-12.9443,-138.713	1/2:31:0,15,16:0:0:15,16:527,557:-88.5339,-45.6391,-41.1236,-43.2444,0,-38.428	1/1:29:0,29,0:0:0:29,0:1031,0:-93.1023,-8.72987,0,-93.1023,-8.72987,-93.1023	1/1:24:0,24,0:0:0:24,0:862,0:-77.9023,-7.22472,0,-77.9023,-7.22472,-77.9023	1/1:19:0,19,0:0:0:19,0:674,0:-60.987,-5.71957,0,-60.987,-5.71957,-60.987	1/2:59:0,37,22:0:0:37,22:1296,792:-170.427,-64.983,-53.8449,-105.8,0,-99.1773	1/2:98:0,53,45:0:0:53,45:1900,1616:-287.149,-132.184,-116.229,-155.324,0,-141.777	1/1:100:0,100,0:0:0:100,0:3552,0:-319.887,-30.103,0,-319.887,-30.103,-319.887	1/1:69:0,69,0:0:0:69,0:2456,0:-221.293,-20.7711,0,-221.293,-20.7711,-221.293	1/2:36:0,28,8:0:0:28,8:1004,288:-105.747,-23.8592,-15.4303,-82.2472,0,-79.839	1/2:61:0,49,12:0:0:49,12:1738,427:-176.75,-35.1557,-20.4053,-141.95,0,-138.338	1/2:133:0,94,39:0:0:94,39:3341,1372:-384.293,-112.036,-83.7395,-272.61,0,-260.869	1/1:199:0,198,0:0:0:198,0:7090,0:-637.907,-59.6039,0,-637.907,-59.6039,-637.907	1/1:29:0,29,0:0:0:29,0:1032,0:-93.1931,-8.72987,0,-93.1931,-8.72987,-93.1931	1/2:183:0,118,65:0:0:118,65:4220,2305:-532.246,-188.143,-152.621,-344.459,0,-324.892	1/2:84:0,65,19:0:0:65,19:2298,657:-240.895,-53.7304,-34.1634,-187.512,0,-181.793	1/2:64:0,46,18:0:0:46,18:1639,640:-186.106,-52.5108,-38.6634,-133.95,0,-128.532	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:10:0,10,0:0:0:10,0:338,0:-30.7452,-3.0103,0,-30.7452,-3.0103,-30.7452	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:7:0,5,2:0:0:5,2:180,72:-20.9217,-6.23466,-4.72951,-15.0469,0,-14.4449	1/2:101:0,47,54:0:0:47,54:1657,1944:-293.89,-158.98,-144.832,-135.265,0,-119.01	1/1:115:0,114,0:0:0:114,0:4077,0:-366.885,-34.3174,0,-366.885,-34.3174,-366.885	1/1:28:0,28,0:0:0:28,0:1000,0:-90.3148,-8.42884,0,-90.3148,-8.42884,-90.3148	.:.:.:.:.:.:.:.	1/1:97:0,97,0:0:0:97,0:3430,0:-308.913,-29.1999,0,-308.913,-29.1999,-308.913	1/1:13:0,13,0:0:0:13,0:466,0:-42.2787,-3.91339,0,-42.2787,-3.91339,-42.2787	1/1:170:0,170,0:0:0:170,0:6017,0:-541.638,-51.1751,0,-541.638,-51.1751,-541.638	1/1:33:0,33,0:0:0:33,0:1184,0:-106.869,-9.93399,0,-106.869,-9.93399,-106.869	1/2:37:0,24,13:0:0:24,13:846,449:-105.71,-36.8241,-29.5994,-69.2335,0,-65.3202	1/2:87:0,70,16:0:0:70,16:2503,576:-251.029,-46.942,-25.8699,-204.03,0,-199.213	1/1:112:0,111,0:0:0:111,0:3905,0:-351.283,-33.4143,0,-351.283,-33.4143,-351.283	1/1:113:0,113,0:0:0:113,0:3993,0:-359.562,-34.0164,0,-359.562,-34.0164,-359.562	1/1:79:0,78,1:0:0:78,1:2774,36:-249.54,-23.4803,0,-246.602,-20.1831,-246.301	1/2:88:0,53,35:0:0:53,35:1898,1260:-257.954,-103.169,-87.2148,-155.144,0,-144.607	1/2:80:0,58,22:0:0:58,22:2080,769:-232.565,-62.9059,-45.4462,-170.011,0,-163.388	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:62:0,36,26:0:0:36,26:1246,932:-177.619,-76.3721,-65.535,-101.6,0,-93.7736	1/1:36:0,36,0:0:0:36,0:1296,0:-116.944,-10.8371,0,-116.944,-10.8371,-116.944	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:74:0,53,21:0:0:53,21:1870,737:-212.6,-60.329,-44.3744,-152.623,0,-146.301	1/1:8:0,8,0:0:0:8,0:277,0:-25.2651,-2.40824,0,-25.2651,-2.40824,-25.2651	1/2:10:0,8,2:0:0:8,2:277,72:-28.7344,-6.23466,-3.82642,-22.8569,0,-22.2548	1/1:18:0,18,0:0:0:18,0:635,0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chr12	23025371	.	CAA	TAA	100371	PASS	AB=0.627389;ABP=357.085;AC=143;AF=0.768817;AN=186;AO=4686;CIGAR=1X2M;DP=5632;DPB=5632.67;DPRA=0;EPP=10152.5;EPPR=2033.35;GTI=5;LEN=1;MEANALT=1.05376;MQM=59.9699;MQMR=59.9702;NS=93;NUMALT=1;ODDS=1.1132;PAIRED=0;PAIREDR=0;PAO=1;PQA=34;PQR=0;PRO=0;QA=167544;QR=33156;RO=939;RPL=4683;RPP=10152.5;RPPR=2042.02;RPR=3;RUN=1;SAF=4686;SAP=10178.5;SAR=0;SRF=938;SRP=2033.35;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:55:0,55:0:0:55:1976:-178.056,-16.5567,0	0/1:43:8,35:8:286:35:1256:-100.401,0,-13.1412	0/1:82:38,44:38:1359:44:1580:-117.807,0,-97.9265	1/1:160:0,160:0:0:160:5725:-515.31,-48.1648,0	1/1:18:1,17:1:36:17:612:-51.8152,-1.82027,0	0/1:43:9,34:9:316:34:1212:-96.442,0,-15.8339	1/1:51:0,51:0:0:51:1832:-165.161,-15.3525,0	0/1:111:36,75:36:1258:75:2658:-206.032,0,-80.0883	0/1:70:21,49:21:752:49:1760:-137.612,0,-46.9344	1/1:72:0,72:0:0:72:2580:-232.444,-21.6742,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:59:26,33:26:905:33:1188:-89.4678,0,-64.0014	1/1:40:0,40:0:0:40:1427:-128.726,-12.0412,0	1/1:27:0,27:0:0:27:955:-86.2648,-8.12781,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:33:16,17:16:569:17:600:-44.3948,0,-41.6086	1/1:30:0,30:0:0:30:1071:-96.7016,-9.0309,0	1/1:25:0,25:0:0:25:891:-80.5088,-7.52575,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:59:23,36:23:811:36:1292:-98.823,0,-55.548	0/1:97:46,51:46:1616:51:1828:-135.601,0,-116.527	1/1:99:0,99:0:0:99:3510:-316.11,-29.802,0	1/1:71:0,71:0:0:71:2552:-229.93,-21.3731,0	0/1:34:8,26:8:280:26:936:-74.3244,0,-15.3037	0/1:62:14,48:14:498:48:1701:-134.71,0,-26.4917	0/1:136:40,95:40:1390:95:3366:-262.285,0,-84.5221	1/1:200:0,200:0:0:200:7131:-641.849,-60.206,0	1/1:29:0,29:0:0:29:1034:-93.3738,-8.72987,0	0/1:182:65,117:65:2322:117:4187:-322.223,0,-154.454	0/1:89:20,69:20:697:69:2472:-195.942,0,-36.2602	0/1:62:18,44:18:642:44:1576:-123.468,0,-39.4464	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:10:0,10:0:0:10:352:-32.0176,-3.0103,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:7:2,5:2:70:5:180:-14.4449,0,-4.54012	0/1:102:55,47:55:1974:47:1692:-121.862,0,-147.23	1/1:117:0,117:0:0:117:4165:-374.994,-35.2205,0	1/1:29:0,29:0:0:29:1040:-93.9144,-8.72987,0	.:.:.:.:.:.:.:.	1/1:100:0,100:0:0:100:3577:-322.129,-30.103,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:168:0,168:0:0:168:5987:-538.934,-50.573,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	0/1:37:14,23:14:485:23:824:-63.3452,0,-32.8391	0/1:88:19,69:19:679:69:2461:-195.252,0,-34.9481	1/1:109:0,108:0:0:108:3850:-346.277,-32.5112,0	1/1:113:0,113:0:0:113:4048:-364.507,-34.0164,0	1/1:77:1,75:1:36:75:2688:-238.639,-19.5649,0	0/1:87:36,51:36:1282:51:1824:-138.25,0,-89.4935	0/1:80:22,58:22:779:58:2068:-162.307,0,-46.35	1/1:5:0,2:0:0:2:72:-6.48887,-0.60206,0	0/1:64:27,37:27:960:37:1328:-100.556,0,-67.4318	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:74:22,52:22:746:52:1856:-145.044,0,-45.1757	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	0/1:11:2,9:2:64:9:320:-25.831,0,-2.76677	1/1:18:0,18:0:0:18:644:-58.2906,-5.41854,0	1/1:70:0,70:0:0:70:2512:-226.329,-21.0721,0	0/1:67:31,36:31:1104:36:1292:-96.4148,0,-79.5013	1/1:6:0,6:0:0:6:208:-19.0591,-1.80618,0	1/1:128:0,128:0:0:128:4580:-412.365,-38.5318,0	0/1:93:26,67:26:928:67:2403:-188.53,0,-55.8429	1/1:42:1,41:1:36:41:1453:-127.466,-9.04499,0	0/1:35:16,19:16:551:19:671:-50.1797,0,-39.3767	0/1:82:26,56:26:924:56:1999:-155.499,0,-58.7928	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	0/1:35:20,15:20:701:15:540:-38.4005,0,-52.8759	0/1:28:9,19:9:315:19:675:-52.6481,0,-20.2584	0/1:21:11,10:11:389:10:356:-26.0596,0,-29.0264	1/1:126:0,126:0:0:126:4524:-407.326,-37.9298,0	0/1:48:31,17:31:1091:17:612:-40.964,0,-84.0492	0/1:53:16,37:16:558:37:1319:-103.057,0,-34.5928	1/1:118:0,118:0:0:118:4224:-380.34,-35.5215,0	1/1:115:0,115:0:0:115:4121:-371.002,-34.6185,0	0/1:54:36,18:36:1255:18:648:-42.3963,0,-96.9931	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:48:0,48:0:0:48:1709:-154.094,-14.4494,0	0/1:76:23,53:23:807:53:1889:-147.408,0,-50.0704	1/1:193:0,193:0:0:193:6906:-621.606,-58.0988,0	1/1:51:0,50:0:0:50:1791:-161.112,-15.0515,0	0/1:41:17,24:17:610:24:860:-65.3796,0,-42.8906	1/1:38:0,38:0:0:38:1356:-122.34,-11.4391,0	1/1:105:1,104:1:36:104:3731:-332.391,-28.0099,0	0/1:16:7,9:7:244:9:324:-24.6894,0,-17.4824	1/1:52:0,52:0:0:52:1852:-166.96,-15.6536,0	0/1:40:19,21:19:659:21:755:-56.2359,0,-47.5904	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	0/1:32:15,17:15:518:17:612:-45.7805,0,-37.313	0/1:55:34,21:34:1222:21:752:-51.4496,0,-93.7304	1/1:68:0,68:0:0:68:2427:-218.685,-20.47,0	1/1:57:0,57:0:0:57:2043:-184.142,-17.1587,0
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chr12	23025591	.	T	A	13158.3	PASS	AB=0.456493;ABP=39.8556;AC=44;AF=0.236559;AN=186;AO=1039;CIGAR=1X;DP=4736;DPB=4736;DPRA=1.3124;EPP=2259.17;EPPR=8020.09;GTI=2;LEN=1;MEANALT=1.02041;MQM=34.9625;MQMR=41.201;NS=93;NUMALT=1;ODDS=5.52916;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=37005;QR=130888;RO=3692;RPL=1039;RPP=2259.17;RPPR=8020.09;RPR=0;RUN=1;SAF=1039;SAP=2259.17;SAR=0;SRF=3692;SRP=8020.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:432:0:0:0,-3.61236,-36.2931	0/1:42:26,16:26:928:16:572:-33.7069,0,-66.0194	0/1:108:54,54:54:1936:54:1920:-126.411,0,-130.033	0/0:126:124,1:124:4392:1:36:0,-34.7072,-380.048	0/1:39:19,20:19:680:20:712:-47.0871,0,-47.8271	0/1:23:15,8:15:532:8:288:-17.1592,0,-38.114	0/0:146:146,0:146:5184:0:0:0,-43.9504,-454.279	0/1:59:35,24:35:1252:24:852:-53.1649,0,-89.0091	0/1:61:26,35:26:932:35:1248:-85.4767,0,-61.57	0/0:67:67,0:67:2400:0:0:0,-20.169,-210.915	0/0:37:37,0:37:1281:0:0:0,-11.1381,-112.326	0/1:30:17,13:17:600:13:464:-29.3868,0,-41.1949	0/0:37:37,0:37:1308:0:0:0,-11.1381,-111.459	0/0:59:58,0:58:2060:0:0:0,-17.4597,-178.498	0/0:31:30,0:30:1054:0:0:0,-9.0309,-90.759	0/1:33:19,14:19:676:14:504:-31.9636,0,-49.3326	0/0:61:61,0:61:2180:0:0:0,-18.3628,-184.282	0/0:28:28,0:28:1000:0:0:0,-8.42884,-85.7871	0/0:21:21,0:21:752:0:0:0,-6.32163,-62.5537	0/1:110:67,43:67:2371:43:1532:-90.8878,0,-173.139	0/1:41:25,16:25:896:16:572:-35.2721,0,-65.4249	0/0:102:102,0:102:3606:0:0:0,-30.7051,-318.867	0/0:28:28,0:28:996:0:0:0,-8.42884,-87.9043	0/0:84:79,5:79:2819:5:167:0,-10.9343,-231.506	0/1:36:20,16:20:720:16:560:-36.1125,0,-50.8478	0/1:152:81,71:81:2867:71:2532:-154.45,0,-206.934	0/0:89:88,0:88:3091:0:0:0,-26.4906,-266.734	0/0:12:12,0:12:423:0:0:0,-3.61236,-36.9982	0/1:105:62,43:62:2215:43:1536:-93.2804,0,-164.342	0/1:125:76,49:76:2669:49:1740:-104.527,0,-190.796	0/1:48:24,24:24:860:24:844:-54.5252,0,-60.6228	0/1:4:1,3:1:36:3:104:-7.80496,0,-2.27658	0/0:20:20,0:20:707:0:0:0,-6.0206,-61.9265	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.50484	.:.:.:.:.:.:.:.	1/1:5:0,5:0:0:5:176:-14.9506,-1.50515,0	0/1:80:35,45:35:1235:45:1616:-106.939,0,-84.2644	0/0:82:82,0:82:2923:0:0:0,-24.6845,-254.667	0/0:28:28,0:28:1004:0:0:0,-8.42884,-83.7854	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.4807	0/0:97:97,0:97:3448:0:0:0,-29.1999,-299.208	0/0:19:19,0:19:680:0:0:0,-5.71957,-59.4313	0/0:57:57,0:57:2008:0:0:0,-17.1587,-174.721	0/0:24:24,0:24:848:0:0:0,-7.22472,-73.2344	0/1:25:10,15:10:351:15:536:-36.3571,0,-23.1078	0/1:25:10,15:10:360:15:522:-35.303,0,-23.9925	0/0:44:44,0:44:1568:0:0:0,-13.2453,-133.811	0/0:90:90,0:90:3173:0:0:0,-27.0927,-276.757	0/0:65:65,0:65:2303:0:0:0,-19.5669,-201.043	0/1:53:30,23:30:1067:23:815:-50.3327,0,-77.1118	0/1:140:81,59:81:2890:59:2100:-127.314,0,-212.341	0/0:5:5,0:5:180:0:0:0,-1.50515,-15.2026	0/1:63:38,25:38:1332:25:900:-51.5471,0,-95.6117	0/0:17:17,0:17:608:0:0:0,-5.11751,-53.9024	0/1:9:4,5:4:140:5:180:-12.4662,0,-9.67818	0/1:54:23,31:23:819:31:1096:-72.9799,0,-55.5232	0/0:12:12,0:12:420:0:0:0,-3.61236,-37.3972	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.54852	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.1274	0/0:52:52,0:52:1836:0:0:0,-15.6536,-159.558	0/1:72:33,39:33:1180:39:1387:-89.6068,0,-80.3596	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.0277	0/0:98:98,0:98:3491:0:0:0,-29.5009,-307.873	0/1:93:50,43:50:1776:43:1541:-95.7649,0,-126.324	0/0:53:53,0:53:1865:0:0:0,-15.9546,-161.504	0/1:19:16,3:16:572:3:99:-2.05433,0,-44.9775	0/1:80:30,50:30:1076:50:1784:-119.51,0,-70.964	0/0:79:78,1:78:2767:1:36:0,-20.5352,-240.941	0/0:8:8,0:8:279:0:0:0,-2.40824,-24.6812	0/1:42:31,11:31:1104:11:392:-20.379,0,-80.6116	0/1:56:29,27:29:1012:27:968:-62.0368,0,-72.4411	0/1:8:4,4:4:136:4:144:-9.60255,0,-9.44759	0/0:78:77,1:77:2736:1:36:0,-21.0134,-231.37	0/1:26:17,9:17:604:9:320:-18.2443,0,-44.3485	0/1:94:46,48:46:1623:48:1720:-111.512,0,-111.616	0/0:81:81,0:81:2860:0:0:0,-24.3834,-250.633	0/0:72:72,0:72:2556:0:0:0,-21.6742,-217.584	0/1:54:34,20:34:1220:20:716:-43.2355,0,-87.0489	0/1:3:1,2:1:36:2:72:-5.36506,0,-2.52051	0/0:65:64,1:64:2280:1:32:0,-16.5124,-194.1	0/1:47:30,17:30:1076:17:604:-34.1962,0,-73.2922	0/0:134:132,2:132:4637:2:72:0,-34.1703,-400.012	0/0:57:57,0:57:1990:0:0:0,-17.1587,-172.545	0/1:36:19,17:19:667:17:608:-38.5881,0,-47.9002	0/0:30:30,0:30:1056:0:0:0,-9.0309,-93.1242	0/0:63:62,0:62:2161:0:0:0,-18.6639,-188.617	0/1:13:7,6:7:248:6:216:-14.2312,0,-17.3578	0/0:31:31,0:31:1104:0:0:0,-9.33193,-94.1278	0/1:38:18,20:18:648:20:720:-47.9852,0,-43.2423	0/1:21:13,8:13:455:8:288:-17.7612,0,-33.6733	0/1:49:33,16:33:1161:16:576:-33.0854,0,-86.6097	0/1:25:9,16:9:324:16:550:-37.1678,0,-20.8543	0/0:31:31,0:31:1096:0:0:0,-9.33193,-96.8381	0/0:44:44,0:44:1540:0:0:0,-13.2453,-135.43
chr12	23025659	.	A	C	18928.5	PASS	AB=0.454721;ABP=49.2221;AC=46;AF=0.247312;AN=186;AO=1193;CIGAR=1X;DP=5546;DPB=5546;DPRA=1.04174;EPP=2593.58;EPPR=9438.07;GTI=1;LEN=1;MEANALT=1;MQM=59.9824;MQMR=59.9848;NS=93;NUMALT=1;ODDS=0.157783;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42588;QR=155467;RO=4353;RPL=0;RPP=2593.58;RPPR=9455.43;RPR=1193;RUN=1;SAF=0;SAP=2593.58;SAR=1193;SRF=2;SRP=9438.07;SRR=4351;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:100:60,40:60:2099:40:1413:-97.362,0,-159.072	0/1:76:42,34:42:1496:34:1220:-87.2285,0,-112.056	0/0:145:145,0:145:5189:0:0:0,-43.6493,-467.148	0/1:35:18,17:18:644:17:608:-44.516,0,-47.7545	0/1:23:12,11:12:428:11:396:-29.0591,0,-31.9351	0/0:148:147,1:147:5251:1:36:0,-40.9542,-469.129	0/1:57:40,17:40:1401:17:597:-36.8983,0,-109.226	0/1:30:11,19:11:396:19:680:-52.4983,0,-26.9518	0/0:83:83,0:83:2972:0:0:0,-24.9855,-267.713	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1989	0/1:43:20,23:20:716:23:828:-61.8998,0,-51.8234	0/0:46:46,0:46:1631:0:0:0,-13.8474,-147.078	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/1:23:13,10:13:460:10:360:-25.8206,0,-34.8117	0/0:38:38,0:38:1344:0:0:0,-11.4391,-121.26	0/0:54:54,0:54:1944:0:0:0,-16.2556,-175.236	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/1:153:75,78:75:2688:78:2784:-204.741,0,-196.107	0/1:49:34,15:34:1216:15:536:-33.8243,0,-94.9737	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.913	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:76:71,5:71:2540:5:180:0,-6.32621,-212.299	0/1:56:41,15:41:1459:15:540:-32.0789,0,-114.748	0/1:198:105,93:105:3745:93:3314:-238.873,0,-277.646	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.611	0/0:15:14,1:14:500:1:21:0,-2.4155,-43.2362	0/1:174:80,94:80:2872:94:3384:-252.395,0,-206.337	0/1:75:42,33:42:1500:33:1188:-84.6513,0,-112.717	0/1:50:26,24:26:932:24:852:-61.9489,0,-69.1474	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:11:8,3:8:288:3:108:-6.76384,0,-22.9561	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	0/1:120:54,66:54:1940:66:2352:-175.816,0,-138.753	0/0:153:151,2:151:5404:2:72:0,-39.2209,-479.654	0/0:34:34,0:34:1196:0:0:0,-10.235,-107.943	.:.:.:.:.:.:.:.	0/0:105:105,0:105:3714:0:0:0,-31.6081,-334.462	0/0:19:19,0:19:676:0:0:0,-5.71957,-61.168	0/0:70:70,0:70:2499:0:0:0,-21.0721,-225.162	0/0:35:35,0:35:1248:0:0:0,-10.536,-112.625	0/1:25:11,14:11:396:14:500:-37.8104,0,-28.457	0/1:61:34,27:34:1220:27:957:-68.081,0,-91.744	0/0:77:77,0:77:2732:0:0:0,-23.1793,-246.122	0/0:107:107,0:107:3799:0:0:0,-32.2102,-342.108	0/0:98:98,0:98:3501:0:0:0,-29.5009,-314.024	0/1:69:26,43:26:920:43:1544:-118.482,0,-62.346	0/1:116:71,45:71:2552:45:1603:-109.64,0,-195.01	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:85:51,34:51:1836:34:1224:-84.8795,0,-139.933	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:67:33,34:33:1173:34:1224:-90.2965,0,-85.7065	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:60:60,0:60:2135:0:0:0,-18.0618,-192.418	0/1:59:37,22:37:1315:22:758:-50.7734,0,-100.89	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:105:105,0:105:3768:0:0:0,-31.6081,-339.318	0/1:96:59,37:59:2090:37:1318:-90.0207,0,-159.468	0/0:48:47,1:47:1677:1:36:0,-10.8512,-147.617	0/1:52:29,23:29:1044:23:811:-57.6564,0,-78.6212	0/1:110:68,42:68:2444:42:1504:-102.541,0,-187.101	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:50:26,24:26:936:24:860:-62.6703,0,-69.508	0/1:46:26,20:26:932:20:712:-50.5587,0,-70.3515	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/1:37:26,11:26:917:11:387:-24.0278,0,-71.7065	0/1:74:40,34:40:1417:34:1220:-87.8306,0,-105.549	0/0:105:105,0:105:3749:0:0:0,-31.6081,-337.609	0/0:70:70,0:70:2495:0:0:0,-21.0721,-224.803	0/1:38:26,12:26:936:12:432:-27.7821,0,-73.1203	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/1:104:48,56:48:1711:56:1996:-148.607,0,-122.968	0/0:183:183,0:183:6552:0:0:0,-55.0885,-589.739	0/0:69:69,0:69:2465:0:0:0,-20.7711,-222.102	0/1:37:21,16:21:752:16:561:-39.679,0,-56.8681	0/0:39:39,0:39:1377:0:0:0,-11.7402,-124.227	0/0:78:78,0:78:2756:0:0:0,-23.4803,-248.281	0/1:33:19,14:19:680:14:504:-35.7641,0,-51.5952	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.056	0/1:42:19,23:19:675:23:820:-61.4793,0,-48.4337	0/1:17:12,5:12:428:5:176:-11.0675,0,-33.7413	0/1:38:20,18:20:708:18:644:-46.8515,0,-52.6065	0/1:29:9,20:9:316:20:716:-56.0378,0,-20.049	0/0:59:59,0:59:2120:0:0:0,-17.7608,-191.068	0/0:48:48,0:48:1711:0:0:0,-14.4494,-154.275
chr12	23037568	.	C	A	60441.2	PASS	AB=0.549635;ABP=117.475;AC=46;AF=0.244681;AN=188;AO=2960;CIGAR=1X;DP=10119;DPB=10119;DPRA=1.15704;EPP=6421.89;EPPR=9273.41;GTI=3;LEN=1;MEANALT=1;MQM=43.3774;MQMR=47.2297;NS=94;NUMALT=1;ODDS=1.81596;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105259;QR=255212;RO=7158;RPL=1083;RPP=465.502;RPPR=3379.11;RPR=1877;RUN=1;SAF=1084;SAP=463.175;SAR=1876;SRF=2724;SRP=890.074;SRR=4434;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:44:44,0:44:1568:0:0:0,-13.2453,-135.409	0/1:157:73,84:73:2612:84:2990:-191.161,0,-174.887	0/1:163:79,84:79:2796:84:3012:-194.135,0,-190.887	0/0:141:138,3:138:4936:3:108:0,-33.8319,-424.117	0/1:64:24,40:24:860:40:1432:-97.4975,0,-53.3381	0/1:43:17,26:17:594:26:920:-62.0302,0,-38.75	0/0:124:123,0:123:4395:0:0:0,-37.0267,-384.804	0/1:161:70,91:70:2498:91:3226:-211.967,0,-162.63	0/1:114:56,58:56:2000:58:2026:-132.45,0,-137.191	0/0:104:104,0:104:3719:0:0:0,-31.3071,-324.805	0/0:175:175,0:175:6231:0:0:0,-52.6802,-547.07	0/1:130:67,63:67:2396:63:2252:-145.485,0,-167.87	0/0:136:136,0:136:4832:0:0:0,-40.9401,-418.144	0/0:187:187,0:187:6653:0:0:0,-56.2926,-575.738	0/0:121:121,0:121:4339:0:0:0,-36.4246,-382.541	0/1:113:60,53:60:2128:53:1876:-124.462,0,-153.13	0/0:118:118,0:118:4210:0:0:0,-35.5215,-361.333	0/0:168:168,0:168:5984:0:0:0,-50.573,-511.514	0/0:75:75,0:75:2688:0:0:0,-22.5772,-230.405	0/1:153:65,88:65:2319:88:3156:-216.42,0,-157.016	0/1:178:78,100:78:2783:100:3563:-240.958,0,-186.836	0/0:32:32,0:32:1144:0:0:0,-9.63296,-101.086	0/0:72:71,1:71:2521:1:36:0,-18.428,-215.593	0/0:102:97,5:97:3445:5:180:0,-15.8997,-280.782	0/1:80:28,52:28:1004:52:1860:-132.843,0,-61.5173	0/1:219:102,117:102:3599:117:4144:-288.661,0,-251.894	0/0:193:193,0:193:6874:0:0:0,-58.0988,-594.355	0/0:65:65,0:65:2323:0:0:0,-19.5669,-203.377	0/1:204:90,114:90:3193:114:4069:-280.459,0,-219.507	0/1:81:37,44:37:1324:44:1545:-101.988,0,-89.1495	0/1:142:63,79:63:2256:79:2800:-194.095,0,-154.166	0/1:5:2,3:2:72:3:108:-8.12703,0,-4.93129	0/0:12:12,0:12:428:0:0:0,-3.61236,-37.5193	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.55243	0/1:6:5,1:5:176:1:36:-1.64831,0,-13.8282	0/1:19:9,10:9:320:10:360:-25.0455,0,-21.9276	0/1:259:97,162:97:3484:162:5756:-420.667,0,-229.779	0/0:96:96,0:96:3413:0:0:0,-28.8989,-293.505	0/0:144:144,0:144:5141:0:0:0,-43.3483,-442.702	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.1644	0/0:114:114,0:114:4068:0:0:0,-34.3174,-354.24	0/0:110:110,0:110:3922:0:0:0,-33.1133,-340.096	0/0:118:118,0:118:4236:0:0:0,-35.5215,-363.126	0/0:126:126,0:126:4503:0:0:0,-37.9298,-396.211	0/1:99:59,40:59:2120:40:1428:-94.2495,0,-157.16	0/1:98:35,63:35:1251:63:2255:-165.72,0,-81.4829	0/0:85:85,0:85:3035:0:0:0,-25.5875,-259.173	0/0:97:97,0:97:3467:0:0:0,-29.1999,-302.393	0/0:72:72,0:72:2531:0:0:0,-21.6742,-222.683	0/1:125:44,81:44:1576:81:2886:-198.921,0,-100.543	0/1:86:35,51:35:1248:51:1816:-126.428,0,-84.2216	0/0:7:7,0:7:252:0:0:0,-2.10721,-21.452	0/1:139:62,77:62:2224:77:2754:-178.313,0,-148.468	0/0:41:41,0:41:1456:0:0:0,-12.3422,-129.033	0/1:11:4,7:4:144:7:252:-16.7348,0,-8.89506	0/1:131:54,77:54:1914:77:2750:-183.53,0,-125.648	0/0:32:32,0:32:1140:0:0:0,-9.63296,-101.108	0/1:7:5,2:5:180:2:68:-3.99833,0,-14.0052	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.1203	0/0:80:80,0:80:2836:0:0:0,-24.0824,-243.571	0/1:147:72,75:72:2576:75:2665:-185.793,0,-182.661	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.56353	0/0:77:77,0:77:2744:0:0:0,-23.1793,-241.637	0/1:181:86,95:86:3048:95:3375:-233.862,0,-212.99	0/0:63:59,4:59:2084:4:144:0,-7.4078,-169.622	0/1:81:30,51:30:1072:51:1814:-127.966,0,-70.5336	0/1:225:91,134:91:3235:134:4753:-327.444,0,-215.115	0/0:115:113,2:113:4037:2:72:0,-28.4507,-347.243	0/0:73:71,2:71:2518:2:72:0,-15.1385,-213.472	0/1:98:55,43:55:1960:43:1525:-93.5827,0,-136.098	0/1:255:130,125:130:4654:125:4436:-306.901,0,-333.988	0/1:19:10,9:10:356:9:309:-20.9782,0,-26.0808	0/0:60:59,1:59:2099:1:36:0,-15.5949,-180.515	0/1:101:46,55:46:1647:55:1961:-132.183,0,-109.158	0/1:190:100,90:100:3546:90:3207:-203.11,0,-247.206	0/0:116:116,0:116:4114:0:0:0,-34.9195,-359.413	0/0:93:92,1:92:3282:1:36:0,-24.3975,-275.398	0/1:160:59,101:59:2108:101:3565:-236.151,0,-131.307	0/1:13:4,9:4:144:9:324:-24.1062,0,-8.84661	0/0:97:97,0:97:3484:0:0:0,-29.1999,-304.42	0/1:112:49,63:49:1756:63:2240:-145.222,0,-115.979	0/0:181:181,0:181:6452:0:0:0,-54.4864,-563.3	0/0:161:161,0:161:5725:0:0:0,-48.4658,-500.321	0/1:132:69,63:69:2467:63:2252:-153.575,0,-177.616	0/0:189:189,0:189:6725:0:0:0,-56.8947,-592.391	0/0:206:205,1:205:7299:1:36:0,-58.766,-638.388	0/1:64:29,35:29:1040:35:1248:-86.5798,0,-69.2802	0/0:108:108,0:108:3863:0:0:0,-32.5112,-333.084	0/1:129:64,65:64:2272:65:2328:-155.794,0,-154.103	0/1:146:67,79:67:2412:79:2798:-191.901,0,-165.771	0/1:185:89,96:89:3137:96:3409:-224.798,0,-218.757	0/1:118:34,84:34:1220:84:2954:-217.971,0,-71.8589	0/0:43:43,0:43:1548:0:0:0,-12.9443,-134.356	0/0:183:183,0:183:6547:0:0:0,-55.0885,-577.16
chr12	23176511	.	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chr12	23190146	.	CG	TG,TA	238846	PASS	AB=0.51938,0.479035;ABP=21.5267,24.6806;AC=140,44;AF=0.76087,0.23913;AN=184;AO=8520,2734;CIGAR=1X1M,2X;DP=11272;DPB=11273;DPRA=0,1.25949;EPP=18504,5939.82;EPPR=20.3821;GTI=0;LEN=1,2;MEANALT=1.65217,2.13462;MQM=52.2245,49.6273;MQMR=60;NS=92;NUMALT=2;ODDS=2.62175;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,72;PQR=0;PRO=0;QA=304212,95950;QR=284;RO=8;RPL=1,2;RPP=18495.3,5922.46;RPPR=20.3821;RPR=8519,2732;RUN=1,1;SAF=1,2;SAP=18495.3,5922.46;SAR=8519,2732;SRF=0;SRP=20.3821;SRR=8;TYPE=snp,mnp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39,0:0:0:39,0:1390,0:-124.137,-11.7402,0,-124.137,-11.7402,-124.137	1/2:95:0,59,36:0:0:59,36:2103,1251:-269.75,-100.528,-82.7674,-169.568,0,-158.731	1/2:271:0,127,143:0:0:127,143:4532,5006:-768.96,-403.114,-364.883,-365.837,0,-322.79	1/1:403:0,402,1:0:0:402,1:14326,36:-1284.21,-121.014,0,-1281.28,-117.729,-1280.98	1/2:87:0,43,44:0:0:43,44:1539,1560:-251.631,-126.568,-113.624,-125.417,0,-112.172	1/2:51:0,30,21:0:0:30,21:1072,739:-146.746,-59.9427,-50.9118,-87.155,0,-80.8334	1/1:179:1,178,0:1:36:178,0:6392,0:-570.522,-50.2861,0,-570.823,-53.5833,-573.76	1/2:188:0,101,87:0:0:101,87:3579,3022:-532.049,-243.189,-212.785,-289.207,0,-263.018	1/2:122:0,71,51:0:0:71,51:2531,1764:-346.514,-141.673,-120.3,-205.187,0,-189.835	1/1:146:0,146,0:0:0:146,0:5239,0:-470.316,-43.9504,0,-470.316,-43.9504,-470.316	1/1:22:0,22,0:0:0:22,0:788,0:-70.9796,-6.62266,0,-70.9796,-6.62266,-70.9796	1/2:85:0,40,45:0:0:40,45:1426,1568:-241.495,-126.295,-114.254,-115.549,0,-102.002	1/1:59:0,59,0:0:0:59,0:2076,0:-185.572,-17.7608,0,-185.572,-17.7608,-185.572	1/1:47:0,47,0:0:0:47,0:1675,0:-150.631,-14.1484,0,-150.631,-14.1484,-150.631	1/1:64:0,64,0:0:0:64,0:2296,0:-206.261,-19.2659,0,-206.261,-19.2659,-206.261	1/2:44:0,33,11:0:0:33,11:1184,379:-126.712,-30.8503,-20.9163,-96.2069,0,-92.8956	1/1:26:0,26,0:0:0:26,0:919,0:-82.0762,-7.82678,0,-82.0762,-7.82678,-82.0762	1/1:18:0,18,0:0:0:18,0:646,0:-57.8812,-5.41854,0,-57.8812,-5.41854,-57.8812	1/1:9:0,9,0:0:0:9,0:322,0:-28.9088,-2.70927,0,-28.9088,-2.70927,-28.9088	1/2:368:0,191,177:0:0:191,177:6829,6216:-1058.62,-503.845,-446.348,-555.133,0,-501.85	1/2:250:0,147,103:0:0:147,103:5229,3611:-716.056,-291.8,-247.549,-424.606,0,-393.6	1/1:134:0,134,0:0:0:134,0:4812,0:-432.535,-40.338,0,-432.535,-40.338,-432.535	1/1:201:0,200,1:0:0:200,1:7158,25:-641.617,-60.206,0,-639.674,-58.0124,-639.373	1/1:96:0,91,4:0:0:91,4:3246,144:-290.543,-27.3937,0,-278.863,-15.5844,-277.659	1/2:103:0,44,59:0:0:44,59:1567,2091:-296.376,-169.635,-156.389,-127.094,0,-109.333	1/2:358:2,189,167:2:70:189,167:6739,5870:-1018.1,-470.227,-419.028,-542.784,0,-498.207	1/1:352:1,351,0:1:36:351,0:12533,0:-1118.8,-102.364,0,-1119.1,-105.662,-1122.04	1/1:36:0,36,0:0:0:36,0:1284,0:-115.538,-10.8371,0,-115.538,-10.8371,-115.538	1/2:398:1,190,207:1:36:190,207:6789,7255:-1136.71,-585.443,-531.185,-548.626,0,-489.251	1/2:200:0,93,106:0:0:93,106:3314,3721:-568.979,-300.294,-272.299,-268.678,0,-236.768	1/2:153:0,69,84:0:0:69,84:2463,2945:-439.511,-239.025,-218.254,-200.839,0,-175.553	1/2:4:0,3,1:0:0:3,1:108,36:-12.0663,-3.27774,-2.37465,-9.14675,0,-8.84572	1/1:11:0,11,0:0:0:11,0:392,0:-35.3135,-3.31133,0,-35.3135,-3.31133,-35.3135	.:.:.:.:.:.:.:.	1/2:10:0,6,4:0:0:6,4:216,144:-29.513,-11.9931,-10.1869,-17.877,0,-16.6729	1/2:12:0,3,9:0:0:3,9:92,322:-33.585,-26.2888,-25.3857,-7.61266,0,-4.90339	1/2:172:0,85,87:0:0:85,87:3030,3056:-494.242,-247.783,-222.195,-246.812,0,-220.622	1/1:144:0,144,0:0:0:144,0:5154,0:-461.685,-43.3483,0,-461.685,-43.3483,-461.685	1/1:37:0,37,0:0:0:37,0:1328,0:-119.026,-11.1381,0,-119.026,-11.1381,-119.026	1/1:2:0,2,0:0:0:2,0:72,0:-6.81953,-0.60206,0,-6.81953,-0.60206,-6.81953	1/1:215:1,214,0:1:34:214,0:7663,0:-682.493,-61.3225,0,-682.794,-64.4204,-685.552	1/1:29:0,29,0:0:0:29,0:1032,0:-92.5109,-8.72987,0,-92.5109,-8.72987,-92.5109	1/1:189:0,188,0:0:0:188,0:6707,0:-600.262,-56.5936,0,-600.262,-56.5936,-600.262	1/1:49:0,49,0:0:0:49,0:1747,0:-157.109,-14.7505,0,-157.109,-14.7505,-157.109	1/2:56:0,34,22:0:0:34,22:1212,784:-162.052,-64.0381,-53.8031,-98.368,0,-91.7454	1/2:138:0,82,56:0:0:82,56:2939,1931:-396.04,-156.748,-132.063,-239.642,0,-222.784	1/1:140:0,140,0:0:0:140,0:5030,0:-449.673,-42.1442,0,-449.673,-42.1442,-449.673	1/1:220:0,217,1:0:0:217,1:7713,36:-691.458,-65.3235,0,-688.531,-62.3496,-688.23	1/1:88:0,88,0:0:0:88,0:3149,0:-282.934,-26.4906,0,-282.934,-26.4906,-282.934	1/2:226:0,141,85:0:0:141,85:5054,3017:-656.056,-244.837,-202.391,-411.215,0,-385.627	1/2:163:0,84,79:0:0:84,79:3016,2783:-471.957,-226.434,-201.147,-245.878,0,-222.097	1/1:5:0,5,0:0:0:5,0:180,0:-16.5286,-1.50515,0,-16.5286,-1.50515,-16.5286	1/2:156:0,65,91:0:0:65,91:2308,3190:-443.842,-257.209,-237.642,-186.983,0,-159.589	1/2:264:0,147,117:0:0:147,117:5255,4129:-763.364,-335.445,-291.194,-428.273,0,-393.052	1/2:9:0,7,2:0:0:7,2:252,72:-26.3884,-6.17488,-4.06767,-20.5696,0,-19.9676	1/2:287:0,159,127:0:0:159,127:5673,4468:-821.641,-361.391,-313.527,-460.267,0,-422.037	1/1:68:0,68,0:0:0:68,0:2438,0:-218.792,-20.47,0,-218.792,-20.47,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chr12	23190161	.	CAAG	TAAA,CAAA	241732	PASS	AB=0.527003,0.470879;ABP=38.8959,44.7458;AC=140,44;AF=0.76087,0.23913;AN=184;AO=8633,2684;CIGAR=1X2M1X,3M1X;DP=11349;DPB=11349;DPRA=0,1.26012;EPP=18309,5701.68;EPPR=0;GTI=0;LEN=4,1;MEANALT=1.91304,2.32075;MQM=52.2086,49.8372;MQMR=0;NS=92;NUMALT=2;ODDS=0.680752;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=304150,95858;QR=0;RO=0;RPL=51,17;RPP=18309,5684.52;RPPR=0;RPR=8582,2667;RUN=1,1;SAF=0,2;SAP=18749.3,5813.88;SAR=8633,2682;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42,0:0:0:42,0:1461,0:-130.427,-12.6433,0,-130.427,-12.6433,-130.427	1/2:95:0,61,34:0:0:61,34:2148,1201:-268.318,-96.0845,-77.7217,-172.581,0,-162.346	1/2:273:0,129,144:0:0:129,144:4564,5122:-782.097,-413.183,-374.35,-369.266,0,-325.918	1/1:414:0,413,1:0:0:413,1:14514,36:-1300.71,-124.325,0,-1297.78,-121.04,-1297.48	1/2:87:0,43,44:0:0:43,44:1515,1571:-250.494,-127.554,-114.609,-123.293,0,-110.047	1/2:51:0,30,21:0:0:30,21:1041,752:-145.203,-61.0766,-52.0457,-84.477,0,-78.1553	1/1:179:0,179,0:0:0:179,0:6342,0:-569.818,-53.8844,0,-569.818,-53.8844,-569.818	1/2:188:0,101,86:0:0:101,86:3551,3055:-532.658,-246.454,-216.05,-286.275,0,-260.386	1/2:124:0,72,51:0:0:72,51:2492,1823:-348.349,-147.04,-125.366,-201.394,0,-186.042	1/1:153:0,151,1:0:0:151,1:5306,36:-476.058,-45.4555,0,-473.12,-42.4831,-472.819	1/1:23:0,23,0:0:0:23,0:811,0:-73.049,-6.92369,0,-73.049,-6.92369,-73.049	1/2:85:0,40,45:0:0:40,45:1412,1612:-243.752,-129.589,-117.548,-114.514,0,-100.968	1/1:59:0,59,0:0:0:59,0:2086,0:-186.181,-17.7608,0,-186.181,-17.7608,-186.181	1/1:47:0,47,0:0:0:47,0:1677,0:-150.83,-14.1484,0,-150.83,-14.1484,-150.83	1/1:65:0,65,0:0:0:65,0:2304,0:-206.142,-19.567,0,-206.142,-19.567,-206.142	1/2:44:0,33,11:0:0:33,11:1160,396:-126.086,-32.3634,-22.4294,-94.077,0,-90.7656	1/1:28:0,28,0:0:0:28,0:966,0:-86.1284,-8.42884,0,-86.1284,-8.42884,-86.1284	1/1:18:0,18,0:0:0:18,0:643,0:-57.6937,-5.41854,0,-57.6937,-5.41854,-57.6937	1/1:9:0,8,0:0:0:8,0:287,0:-25.7147,-2.40824,0,-25.7147,-2.40824,-25.7147	1/2:370:0,195,174:0:0:195,174:6918,6215:-1065.64,-504.19,-445.489,-561.449,0,-509.07	1/2:251:0,149,102:0:0:149,102:5240,3636:-719.339,-294.509,-249.656,-425.182,0,-394.477	1/1:135:0,135,0:0:0:135,0:4767,0:-428.582,-40.6391,0,-428.582,-40.6391,-428.582	1/1:206:0,204,1:0:0:204,1:7210,32:-646.513,-61.4101,0,-643.958,-58.8205,-643.657	1/1:96:0,91,4:0:0:91,4:3185,140:-284.619,-27.3937,0,-273.288,-16.018,-272.084	1/2:103:0,46,57:0:0:46,57:1608,2048:-296.406,-166.437,-152.589,-130.321,0,-113.162	1/2:357:0,193,163:0:0:193,163:6821,5824:-1028.71,-473.794,-415.695,-555.024,0,-505.956	1/1:360:0,357,0:0:0:357,0:12615,0:-1129.8,-107.468,0,-1129.8,-107.468,-1129.8	1/1:36:0,36,0:0:0:36,0:1248,0:-112.353,-10.8371,0,-112.353,-10.8371,-112.353	1/2:395:0,192,202:0:0:192,202:6744,7182:-1131.16,-583.613,-525.815,-547.66,0,-486.852	1/2:200:0,92,106:0:0:92,106:3260,3804:-571.948,-307.508,-279.814,-264.508,0,-232.598	1/2:147:0,69,77:0:0:69,77:2450,2738:-421.781,-222.457,-201.685,-199.476,0,-176.297	1/2:4:0,3,1:0:0:3,1:108,36:-12.0663,-3.27774,-2.37465,-9.14675,0,-8.84572	1/1:11:0,10,0:0:0:10,0:355,0:-31.9159,-3.0103,0,-31.9159,-3.0103,-31.9159	.:.:.:.:.:.:.:.	1/2:10:0,6,4:0:0:6,4:210,140:-28.6353,-11.6413,-9.83511,-17.3415,0,-16.1374	1/2:12:0,3,9:0:0:3,9:104,324:-34.6408,-26.4601,-25.557,-8.52208,0,-5.81281	1/2:172:0,85,87:0:0:85,87:2995,3119:-496.932,-253.426,-227.838,-243.86,0,-217.67	1/1:147:0,147,0:0:0:147,0:5139,0:-460.657,-44.2514,0,-460.657,-44.2514,-460.657	1/1:37:0,37,0:0:0:37,0:1309,0:-117.357,-11.1381,0,-117.357,-11.1381,-117.357	1/1:3:0,3,0:0:0:3,0:108,0:-10.0401,-0.90309,0,-10.0401,-0.90309,-10.0401	1/1:215:0,213,0:0:0:213,0:7560,0:-675.593,-64.1194,0,-675.593,-64.1194,-675.593	1/1:29:0,29,0:0:0:29,0:1020,0:-91.2776,-8.72987,0,-91.2776,-8.72987,-91.2776	1/1:195:0,194,0:0:0:194,0:6805,0:-608.645,-58.3998,0,-608.645,-58.3998,-608.645	1/1:50:0,50,0:0:0:50,0:1756,0:-158.1,-15.0515,0,-158.1,-15.0515,-158.1	1/2:55:0,35,20:0:0:35,20:1206,720:-156.097,-58.8877,-48.3517,-97.5622,0,-91.5416	1/2:136:0,82,54:0:0:82,54:2884,1932:-391.93,-157.582,-132.897,-234.703,0,-218.447	1/1:141:0,140,0:0:0:140,0:4949,0:-442.552,-42.1442,0,-442.552,-42.1442,-442.552	1/1:224:0,223,1:0:0:223,1:7781,36:-697.235,-67.1297,0,-694.308,-63.8442,-694.007	1/1:89:0,89,0:0:0:89,0:3137,0:-281.549,-26.7917,0,-281.549,-26.7917,-281.549	1/2:231:0,143,88:0:0:143,88:5049,3160:-667.245,-257.045,-213.998,-410.555,0,-384.065	1/2:164:0,86,78:0:0:86,78:3006,2804:-472.668,-228.614,-202.725,-244.409,0,-220.928	1/1:5:0,5,0:0:0:5,0:180,0:-16.5286,-1.50515,0,-16.5286,-1.50515,-16.5286	1/2:158:0,68,90:0:0:68,90:2412,3219:-455.26,-260.274,-239.804,-195.339,0,-168.247	1/2:263:0,149,114:0:0:149,114:5278,4088:-761.941,-332.45,-287.596,-429.847,0,-395.53	1/2:9:0,7,2:0:0:7,2:245,72:-25.7689,-6.17488,-4.06767,-19.948,0,-19.346	1/2:288:0,162,125:0:0:162,125:5722,4467:-825.529,-361.687,-312.92,-463.957,0,-426.328	1/1:69:0,69,0:0:0:69,0:2411,0:-216.416,-20.7711,0,-216.416,-20.7711,-216.416	1/1:15:0,14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chr12	23230033	.	TTATA	CTATA,CTATG	165508	PASS	AB=0.485707,0.507147;ABP=9.71439,4.68632;AC=141,45;AF=0.758065,0.241935;AN=186;AO=5775,1926;CIGAR=1X4M,1X3M1X;DP=7742;DPB=7742;DPRA=0,1.07816;EPP=12491.2,4176.58;EPPR=5.18177;GTI=0;LEN=1,5;MEANALT=1.93548,2.55102;MQM=59.9929,59.9735;MQMR=60;NS=93;NUMALT=2;ODDS=2.35659;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=206194,67927;QR=36;RO=1;RPL=5769,1925;RPP=12491.2,4176.58;RPPR=5.18177;RPR=6,1;RUN=1,1;SAF=0,0;SAP=12543.3,4185.27;SAR=5775,1926;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44,0:0:0:44,0:1557,0:-140.42,-13.2453,0,-140.42,-13.2453,-140.42	1/2:75:0,30,45:0:0:30,45:1076,1591:-217.697,-129.931,-120.9,-88.122,0,-74.5756	1/2:136:0,59,75:0:0:59,75:2105,2673:-389.484,-217.884,-200.123,-171.602,0,-149.025	1/1:200:0,200,0:0:0:200,0:7051,0:-634.607,-60.206,0,-634.607,-60.206,-634.607	1/2:36:0,16,20:0:0:16,20:576,705:-104.756,-57.7541,-52.9377,-47.3585,0,-41.3379	1/2:34:0,20,14:0:0:20,14:716,501:-99.5984,-41.2091,-35.1885,-58.7471,0,-54.5327	1/1:95:0,94,0:0:0:94,0:3376,0:-303.695,-28.2968,0,-303.695,-28.2968,-303.695	1/2:80:0,50,30:0:0:50,30:1770,1070:-231.754,-87.582,-72.5305,-144.528,0,-135.497	1/2:109:0,57,50:0:0:57,50:2027,1746:-307.27,-142.079,-124.92,-165.25,0,-150.198	1/1:95:0,95,0:0:0:95,0:3412,0:-307.293,-28.5979,0,-307.293,-28.5979,-307.293	1/1:39:0,38,0:0:0:38,0:1359,0:-122.328,-11.4391,0,-122.328,-11.4391,-122.328	1/2:76:0,29,47:0:0:29,47:1044,1650:-219.827,-134.639,-125.909,-85.5449,0,-71.3965	1/2:72:0,34,37:0:0:34,37:1224,1310:-206.628,-106.752,-96.5174,-99.9206,0,-88.7825	1/1:50:0,50,0:0:0:50,0:1785,0:-160.931,-15.0515,0,-160.931,-15.0515,-160.931	1/1:63:0,63,0:0:0:63,0:2256,0:-203.303,-18.9649,0,-203.303,-18.9649,-203.303	1/2:55:0,19,36:0:0:19,36:669,1273:-158.497,-104.035,-98.3157,-54.8144,0,-43.9773	1/1:24:0,24,0:0:0:24,0:864,0:-78.0826,-7.22472,0,-78.0826,-7.22472,-78.0826	1/1:26:0,26,0:0:0:26,0:921,0:-83.2052,-7.82678,0,-83.2052,-7.82678,-83.2052	1/1:23:0,23,0:0:0:23,0:820,0:-74.122,-6.92369,0,-74.122,-6.92369,-74.122	1/2:129:0,65,63:0:0:65,63:2328,2236:-372.033,-182.177,-162.61,-189.853,0,-170.888	1/2:158:0,95,63:0:0:95,63:3397,2189:-455.303,-178.309,-149.711,-277.345,0,-258.381	1/1:118:0,117,0:0:0:117,0:4204,0:-378.288,-35.2205,0,-378.288,-35.2205,-378.288	1/1:128:0,127,0:0:0:127,0:4530,0:-407.505,-38.2308,0,-407.505,-38.2308,-407.505	1/1:82:0,76,4:0:0:76,4:2732,138:-245.791,-22.8783,0,-234.58,-11.6369,-233.376	1/2:68:0,24,40:0:0:24,40:860,1412:-185.152,-115.01,-107.785,-70.1696,0,-58.1284	1/2:201:0,93,108:0:0:93,108:3321,3811:-581.436,-310.68,-282.684,-271.111,0,-238.6	1/1:221:0,220,0:0:0:220,0:7893,0:-710.061,-66.2266,0,-710.061,-66.2266,-710.061	1/1:16:0,16,0:0:0:16,0:572,0:-51.8134,-4.81648,0,-51.8134,-4.81648,-51.8134	1/2:237:0,117,119:0:0:117,119:4151,4174:-677.853,-339.655,-304.435,-338.191,0,-302.368	1/2:106:0,60,46:0:0:60,46:2136,1600:-304.533,-130.44,-112.378,-174.444,0,-160.597	1/2:141:0,84,54:0:0:84,54:2997,1912:-400.099,-155.779,-130.493,-244.353,0,-228.097	1/2:16:0,6,10:0:0:6,10:201,347:-44.8254,-28.5539,-26.7477,-16.6109,0,-13.6006	1/1:33:0,33,0:0:0:33,0:1188,0:-107.229,-9.93399,0,-107.229,-9.93399,-107.229	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/2:18:0,10,6:0:0:10,6:360,207:-46.2477,-16.8576,-13.8473,-29.4324,0,-27.6262	1/2:181:0,89,90:0:0:89,90:3147,3180:-515.286,-258.979,-232.187,-256.306,0,-229.213	1/1:119:0,119,0:0:0:119,0:4229,0:-380.789,-35.8226,0,-380.789,-35.8226,-380.789	1/1:22:0,22,0:0:0:22,0:792,0:-71.6057,-6.62266,0,-71.6057,-6.62266,-71.6057	.:.:.:.:.:.:.:.	1/1:96:0,96,0:0:0:96,0:3436,0:-309.452,-28.8989,0,-309.452,-28.8989,-309.452	1/1:31:0,31,0:0:0:31,0:1116,0:-100.752,-9.33193,0,-100.752,-9.33193,-100.752	1/1:101:0,101,0:0:0:101,0:3601,0:-324.295,-30.404,0,-324.295,-30.404,-324.295	1/1:40:0,40,0:0:0:40,0:1416,0:-127.735,-12.0412,0,-127.735,-12.0412,-127.735	1/2:37:0,13,23:0:0:13,23:464,808:-103.673,-65.8426,-61.9292,-37.9079,0,-30.9843	1/2:98:0,50,48:0:0:50,48:1796,1694:-284.812,-138.297,-123.245,-146.871,0,-132.421	1/1:128:0,128,0:0:0:128,0:4585,0:-412.813,-38.5318,0,-412.813,-38.5318,-412.813	1/1:147:0,147,0:0:0:147,0:5236,0:-471.377,-44.2514,0,-471.377,-44.2514,-471.377	1/1:87:0,87,0:0:0:87,0:3109,0:-280.035,-26.1896,0,-280.035,-26.1896,-280.035	1/2:100:0,54,46:0:0:54,46:1931,1620:-289.697,-132.241,-115.986,-157.81,0,-143.963	1/2:166:0,79,85:0:0:79,85:2844,3017:-477.874,-245.815,-222.034,-232.056,0,-206.468	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:110:0,59,51:0:0:59,51:2120,1803:-320.152,-147.2,-129.439,-173.308,0,-157.955	1/2:47:0,27,20:0:0:27,20:962,691:-134.909,-56.4902,-48.3624,-78.7685,0,-72.7479	1/2:11:0,8,3:0:0:8,3:288,108:-32.6714,-9.17208,-6.76384,-23.8592,0,-22.9561	1/2:152:0,76,74:0:0:76,74:2679,2625:-432.082,-213.961,-191.082,-218.212,0,-195.935	1/1:30:0,30,0:0:0:30,0:1080,0:-97.5132,-9.0309,0,-97.5132,-9.0309,-97.5132	1/2:12:0,3,9:0:0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chr12	23245854	.	CTGCT	TTGCT	23341.2	PASS	AB=0.534596;ABP=29.9048;AC=47;AF=0.25;AN=188;AO=1392;CIGAR=1X4M;DP=5067;DPB=5068;DPRA=1.05488;EPP=3025.7;EPPR=7891.97;GTI=1;LEN=1;MEANALT=1.35417;MQM=59.3355;MQMR=59.9948;NS=94;NUMALT=1;ODDS=0.521577;PAIRED=0;PAIREDR=0;PAO=3;PQA=106;PQR=0;PRO=0;QA=49375;QR=128527;RO=3633;RPL=1392;RPP=3025.7;RPPR=7891.97;RPR=0;RUN=1;SAF=0;SAP=3025.7;SAR=1392;SRF=0;SRP=7891.97;SRR=3633;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1053:0:0:0,-9.0309,-95.0802	0/1:49:17,32:17:598:32:1114:-85.6159,0,-39.3411	0/1:107:54,53:54:1879:53:1862:-135.483,0,-137.175	0/0:127:127,0:127:4500:0:0:0,-38.2308,-405.173	0/1:29:16,13:16:566:13:453:-32.3682,0,-42.5412	0/1:30:5,20:5:180:20:720:-57.2397,0,-8.66657	0/0:17:17,0:17:610:0:0:0,-5.11751,-55.2328	0/1:100:43,57:43:1534:57:2048:-154.436,0,-108.25	0/1:49:11,38:11:391:38:1353:-107.143,0,-20.7243	0/0:28:28,0:28:1001:0:0:0,-8.42884,-90.4057	0/0:39:38,0:38:1346:0:0:0,-11.4391,-121.08	0/1:58:27,30:27:944:30:1072:-79.1662,0,-67.7561	0/1:50:20,29:20:692:29:1040:-78.7584,0,-47.49	0/0:41:41,0:41:1450:0:0:0,-12.3422,-130.795	0/0:36:36,0:36:1276:0:0:0,-10.8371,-115.142	0/1:56:23,33:23:820:33:1180:-89.6186,0,-57.2648	0/0:27:26,0:26:921:0:0:0,-7.82678,-82.8471	0/0:19:19,0:19:670:0:0:0,-5.71957,-60.6263	0/0:24:24,0:24:857:0:0:0,-7.22472,-77.4513	0/1:53:26,27:26:919:27:964:-71.1222,0,-67.072	0/1:93:50,43:50:1756:43:1533:-110.209,0,-130.327	0/0:102:102,0:102:3609:0:0:0,-30.7051,-325.019	0/0:67:67,0:67:2371:0:0:0,-20.169,-213.648	0/0:45:41,4:41:1453:4:144:0,-0.232732,-117.752	0/1:35:19,16:19:679:16:576:-41.5353,0,-50.9032	0/1:131:58,71:58:2039:71:2499:-185.918,0,-144.588	0/0:145:145,0:145:5134:0:0:0,-43.6493,-462.208	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0064	0/1:202:111,89:111:3947:89:3177:-225.541,0,-294.829	0/1:68:30,38:30:1036:38:1322:-98.6823,0,-73.0184	0/1:47:24,23:24:844:23:794:-57.5991,0,-62.1312	0/1:15:13,2:13:463:2:72:-2.32127,0,-37.4917	0/0:16:16,0:16:570:0:0:0,-4.81648,-51.6328	0/0:6:6,0:6:210:0:0:0,-1.80618,-19.2421	0/1:12:6,6:6:216:6:216:-16.067,0,-16.1782	0/1:28:9,19:9:321:19:669:-52.0558,0,-20.8046	0/1:148:78,67:78:2750:67:2382:-170.617,0,-203.735	0/0:71:69,0:69:2408:0:0:0,-20.7711,-216.617	0/0:31:31,0:31:1095:0:0:0,-9.33193,-98.8599	0/1:6:2,4:2:66:4:144:-11.5074,0,-4.46177	0/0:49:48,0:48:1714:0:0:0,-14.4494,-154.186	0/0:35:34,0:34:1217:0:0:0,-10.235,-109.477	0/0:62:62,0:62:2212:0:0:0,-18.6639,-199.345	0/0:35:35,0:35:1223:0:0:0,-10.536,-110.372	0/1:50:18,32:18:643:32:1133:-87.2242,0,-43.1487	0/1:69:30,39:30:1049:39:1392:-104.808,0,-73.9477	0/0:84:82,0:82:2875:0:0:0,-24.6845,-258.629	0/0:103:103,0:103:3633:0:0:0,-31.0061,-327.177	0/0:50:50,0:50:1758:0:0:0,-15.0515,-158.502	0/1:69:30,39:30:1070:39:1367:-102.205,0,-75.8413	0/1:28:6,21:6:201:21:752:-59.4448,0,-9.90788	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:74:34,40:34:1212:40:1421:-105.906,0,-87.1098	0/1:20:9,11:9:315:11:396:-29.9621,0,-22.6672	0/1:25:5,20:5:177:20:682:-54.0663,0,-8.75129	0/1:78:33,45:33:1154:45:1599:-120.671,0,-80.6848	0/0:30:30,0:30:1077:0:0:0,-9.0309,-97.2432	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6762	0/1:75:47,27:47:1664:27:949:-63.079,0,-127.42	0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7598	0/0:118:118,0:118:4162:0:0:0,-35.5215,-374.766	0/0:82:81,0:81:2865:0:0:0,-24.3834,-257.729	0/0:19:17,1:17:604:1:36:0,-2.18009,-51.0926	0/1:62:25,37:25:898:37:1324:-100.781,0,-62.477	0/1:90:41,47:41:1464:47:1658:-122.618,0,-105.206	0/0:60:58,0:58:2067:0:0:0,-17.4597,-185.941	0/0:28:28,0:28:1001:0:0:0,-8.42884,-90.4055	0/1:29:17,12:17:603:12:428:-30.0837,0,-45.8704	0/1:31:10,21:10:354:21:752:-58.6743,0,-22.8675	0/1:16:7,9:7:250:9:320:-24.3081,0,-18.0303	0/0:111:111,0:111:3922:0:0:0,-33.4143,-353.177	0/0:47:47,0:47:1665:0:0:0,-14.1484,-150.137	0/1:89:25,64:25:880:64:2264:-176.958,0,-52.7262	0/0:111:111,0:111:3939:0:0:0,-33.4143,-354.637	0/0:27:27,0:27:940:0:0:0,-8.12781,-84.9114	0/1:48:22,26:22:781:26:917:-68.3827,0,-56.1637	0/1:9:4,5:4:144:5:180:-13.797,0,-10.6043	0/0:68:68,0:68:2408:0:0:0,-20.47,-216.976	0/1:60:31,28:31:1088:28:981:-70.4601,0,-80.1074	0/0:126:123,0:123:4359:0:0:0,-37.0267,-392.129	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.904	0/1:47:25,22:25:885:22:788:-57.0964,0,-65.8202	0/0:32:32,0:32:1138:0:0:0,-9.63296,-102.729	0/0:62:62,0:62:2213:0:0:0,-18.6639,-199.435	0/1:21:4,16:4:135:16:576:-45.7495,0,-6.10658	0/0:65:63,0:63:2197:0:0:0,-18.9649,-197.634	0/1:67:38,29:38:1350:29:1029:-72.6686,0,-101.631	0/1:29:13,16:13:463:16:568:-42.6626,0,-33.277	0/1:84:47,34:47:1684:34:1216:-84.9719,0,-127.101	0/1:51:17,33:17:605:33:1184:-91.3873,0,-39.3697	0/0:68:68,0:68:2391:0:0:0,-20.47,-215.446	0/0:39:38,0:38:1354:0:0:0,-11.4391,-121.801
chr12	23245992	.	CTCTT	ATCTC,CTCTC	182623	PASS	AB=0.495965,0.497983;ABP=3.50092,3.13295;AC=142,46;AF=0.755319,0.244681;AN=188;AO=4960,1745;CIGAR=1X3M1X,4M1X;DP=6743;DPB=6743.4;DPRA=0,1.30081;EPP=10617.7,2501.62;EPPR=5.18177;GTI=2;LEN=5,1;MEANALT=1.94681,2.38462;MQM=59.7425,59.9989;MQMR=60;NS=94;NUMALT=2;ODDS=0.0570084;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=29.5,29.5;PQR=0;PRO=0;QA=173465,61561;QR=36;RO=1;RPL=2396,699;RPP=15.3667,152.847;RPPR=5.18177;RPR=2564,1046;RUN=1,1;SAF=2412,863;SAP=11.1078,3.45953;SAR=2548,882;SRF=1;SRP=5.18177;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,28,0:0:0:28,0:977,0:-87.8754,-8.42884,0,-87.8754,-8.42884,-87.8754	1/2:66:0,32,33:0:0:32,33:1130,1176:-187.491,-95.9607,-86.3278,-91.6298,0,-81.6958	1/2:99:0,49,50:0:0:49,50:1735,1766:-285.5,-144.17,-129.42,-141.683,0,-126.631	1/1:142:0,140,0:0:0:140,0:4872,0:-438.255,-42.1442,0,-438.255,-42.1442,-438.255	1/2:55:0,20,34:0:0:20,34:696,1203:-154.564,-97.9804,-91.9598,-56.5746,0,-46.3396	1/2:25:0,11,14:0:0:11,14:374,489:-70.4478,-40.1245,-36.8131,-30.6672,0,-26.4528	1/1:70:0,70,0:0:0:70,0:2413,0:-217.42,-21.0721,0,-217.42,-21.0721,-217.42	1/2:113:0,49,64:0:0:49,64:1702,2261:-322.807,-184.486,-169.735,-138.671,0,-119.405	1/2:65:0,29,35:0:0:29,35:997,1217:-179.965,-99.0018,-90.2719,-81.0161,0,-70.48	1/1:56:0,56,0:0:0:56,0:1952,0:-175.955,-16.8577,0,-175.955,-16.8577,-175.955	1/1:73:0,73,0:0:0:73,0:2553,0:-230.022,-21.9752,0,-230.022,-21.9752,-230.022	1/2:172:0,97,75:0:0:97,75:3401,2642:-492.179,-215.45,-186.251,-277.08,0,-254.503	1/2:105:0,33,70:0:0:33,70:1151,2469:-294.684,-201.09,-191.156,-93.6401,0,-72.568	1/1:108:0,108,0:0:0:108,0:3755,0:-338.155,-32.5112,0,-338.155,-32.5112,-338.155	1/1:86:0,85,1:0:0:85,1:3004,36:-270.161,-25.5876,0,-267.223,-22.2903,-266.922	1/2:95:0,52,43:0:0:52,43:1800,1506:-269.155,-122.886,-107.232,-146.617,0,-133.673	1/1:75:0,75,0:0:0:75,0:2655,0:-239.179,-22.5773,0,-239.179,-22.5773,-239.179	1/1:59:0,58,0:0:0:58,0:2060,0:-185.298,-17.4597,0,-185.298,-17.4597,-185.298	1/1:53:0,53,0:0:0:53,0:1848,0:-166.555,-15.9546,0,-166.555,-15.9546,-166.555	1/2:94:0,46,48:0:0:46,48:1588,1714:-269.079,-140.096,-126.248,-129.334,0,-114.885	1/2:162:0,87,72:0:0:87,72:3028,2530:-452.171,-205.968,-179.778,-246.244,0,-224.57	1/1:37:0,36,0:0:0:36,0:1255,0:-112.969,-10.8371,0,-112.969,-10.8371,-112.969	1/1:58:0,57,0:0:0:57,0:1996,0:-179.616,-17.1587,0,-179.616,-17.1587,-179.616	1/2:61:0,46,14:0:0:46,14:1612,486:-170.667,-39.4951,-25.6477,-131.161,0,-126.946	1/2:55:0,27,27:0:0:27,27:939,968:-155.291,-78.9498,-70.822,-76.3343,0,-68.2065	1/2:105:0,49,56:0:0:49,56:1718,1986:-301.95,-162.155,-147.405,-140.147,0,-123.29	1/1:138:0,137,1:0:0:137,1:4757,32:-427.968,-41.2411,0,-425.39,-38.3428,-425.089	1/1:53:0,53,0:0:0:53,0:1837,0:-165.606,-15.9546,0,-165.606,-15.9546,-165.606	1/2:122:0,78,43:0:0:78,43:2712,1518:-344.1,-123.608,-100.127,-220.484,0,-207.539	1/2:35:0,24,10:0:0:24,10:830,345:-95.0268,-28.0121,-20.7873,-67.001,0,-63.9907	1/2:45:0,25,20:0:0:25,20:854,716:-128.041,-58.7471,-51.2214,-69.6446,0,-63.624	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/1:7:0,7,0:0:0:7,0:247,0:-22.5729,-2.10721,0,-22.5729,-2.10721,-22.5729	1/1:2:0,2,0:0:0:2,0:65,0:-6.17345,-0.60206,0,-6.17345,-0.60206,-6.17345	1/2:3:0,1,1:0:0:1,1:36,36:-5.95473,-2.99734,-2.69631,-2.99734,0,-2.69631	2/2:9:0,1,8:0:0:1,8:25,288:-26.0052,-24.0686,-23.7675,-2.40824,-0.209407,0	1/2:213:1,105,106:1:36:105,106:3727,3733:-604.335,-300.965,-272.295,-300.727,0,-271.755	1/1:43:0,42,1:0:0:42,1:1478,36:-132.954,-12.6433,0,-130.017,-9.34602,-129.716	1/1:88:0,87,0:0:0:87,0:3082,0:-277.293,-26.1896,0,-277.293,-26.1896,-277.293	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:87:0,87,0:0:0:87,0:3030,0:-272.932,-26.1896,0,-272.932,-26.1896,-272.932	1/1:42:0,42,0:0:0:42,0:1472,0:-132.772,-12.6433,0,-132.772,-12.6433,-132.772	1/1:85:0,85,0:0:0:85,0:2969,0:-267.445,-25.5876,0,-267.445,-25.5876,-267.445	1/1:89:0,89,0:0:0:89,0:3106,0:-279.732,-26.7917,0,-279.732,-26.7917,-279.732	1/2:76:0,34,42:0:0:34,42:1186,1496:-218.748,-122.291,-112.056,-96.8082,0,-84.1649	1/2:43:0,20,23:0:0:20,23:717,807:-124.508,-66.0255,-60.0049,-58.8376,0,-51.9139	1/1:69:0,69,0:0:0:69,0:2381,0:-214.539,-20.7711,0,-214.539,-20.7711,-214.539	1/1:71:0,70,0:0:0:70,0:2477,0:-222.868,-21.0721,0,-222.868,-21.0721,-222.868	1/1:36:0,36,0:0:0:36,0:1280,0:-115.503,-10.8371,0,-115.503,-10.8371,-115.503	1/2:79:0,44,35:0:0:44,35:1552,1239:-227.647,-101.278,-88.0323,-126.723,0,-116.187	1/2:57:0,25,32:0:0:25,32:886,1133:-164.823,-92.6437,-85.1179,-72.5331,0,-62.9002	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:105:0,51,53:0:0:51,53:1770,1886:-297.634,-153.781,-138.429,-143.922,0,-127.968	1/2:30:0,13,17:0:0:13,17:465,606:-87.6713,-49.7536,-45.8402,-38.2747,0,-33.1572	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:90:0,50,40:0:0:50,40:1706,1407:-253.301,-114.885,-99.8338,-138.762,0,-126.721	1/1:28:0,28,0:0:0:28,0:972,0:-87.7014,-8.42884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chr12	23246008	.	T	C	126509	PASS	AB=0.483513;ABP=11.1012;AC=143;AF=0.760638;AN=188;AO=4773;CIGAR=1X;DP=6551;DPB=6551;DPRA=0;EPP=10350.1;EPPR=3861.72;GTI=2;LEN=1;MEANALT=1.01064;MQM=59.7509;MQMR=59.9989;NS=94;NUMALT=1;ODDS=0.33037;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=168823;QR=63662;RO=1777;RPL=2340;RPP=6.94516;RPPR=7.26404;RPR=2433;RUN=1;SAF=2338;SAP=7.29092;SAR=2435;SRF=859;SRP=7.26404;SRR=918;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:968:-87.4205,-8.42884,0	0/1:61:31,30:31:1100:30:1059:-77.2567,0,-80.9475	0/1:100:51,49:51:1827:49:1755:-128.127,0,-134.607	1/1:136:0,136:0:0:136:4809:-432.916,-40.9401,0	0/1:51:33,18:33:1179:18:632:-41.8509,0,-91.0647	0/1:24:14,10:14:500:10:351:-24.6937,0,-38.1115	1/1:66:0,66:0:0:66:2351:-211.844,-19.868,0	0/1:112:62,50:62:2224:50:1792:-127.714,0,-166.709	0/1:64:35,29:35:1237:29:1019:-72.7554,0,-92.3664	1/1:52:0,52:0:0:52:1860:-167.68,-15.6536,0	1/1:70:0,70:0:0:70:2504:-225.612,-21.0721,0	0/1:170:77,93:77:2764:93:3287:-244.844,0,-197.826	0/1:103:71,32:71:2543:32:1116:-69.7221,0,-198.114	1/1:104:0,104:0:0:104:3658:-329.42,-31.3071,0	1/1:85:0,85:0:0:85:3013:-271.328,-25.5876,0	0/1:92:47,45:47:1688:45:1596:-116.226,0,-124.512	1/1:73:0,73:0:0:73:2595:-233.774,-21.9752,0	1/1:58:0,58:0:0:58:2051:-184.836,-17.4597,0	1/1:52:0,52:0:0:52:1808:-162.901,-15.6536,0	0/1:93:47,46:47:1692:46:1600:-116.28,0,-124.571	0/1:160:76,84:76:2709:84:2969:-219.254,0,-195.888	1/1:36:0,36:0:0:36:1280:-115.503,-10.8371,0	1/1:53:0,53:0:0:53:1858:-167.495,-15.9546,0	0/1:58:14,44:14:504:44:1571:-124.217,0,-28.2384	0/1:50:27,23:27:968:23:824:-59.4318,0,-72.3859	0/1:105:58,47:58:2088:47:1680:-119.871,0,-156.582	1/1:135:1,134:1:36:134:4736:-422.794,-37.0408,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:117:43,74:43:1536:74:2577:-196.954,0,-103.312	0/1:35:11,24:11:396:24:851:-65.3505,0,-25.4467	0/1:45:22,23:22:777:23:803:-59.0415,0,-56.704	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:2:0,2:0:0:2:68:-6.45771,-0.60206,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:210:109,101:109:3915:101:3590:-260.088,0,-289.325	1/1:42:1,41:1:36:41:1459:-128.007,-9.04499,0	1/1:87:0,87:0:0:87:3062:-275.801,-26.1896,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:85:0,85:0:0:85:2986:-268.964,-25.5876,0	1/1:41:0,41:0:0:41:1442:-130.073,-12.3422,0	1/1:82:0,82:0:0:82:2900:-261.236,-24.6845,0	1/1:86:0,86:0:0:86:3064:-275.944,-25.8886,0	0/1:74:42,32:42:1508:32:1148:-81.3513,0,-113.738	0/1:43:23,20:23:811:20:720:-52.1845,0,-60.3657	1/1:64:0,64:0:0:64:2264:-204.014,-19.2659,0	1/1:69:0,69:0:0:69:2445:-220.285,-20.7711,0	1/1:35:0,35:0:0:35:1247:-112.534,-10.5361,0	0/1:79:35,44:35:1256:44:1563:-117.177,0,-89.5639	0/1:59:34,25:34:1224:25:900:-63.5602,0,-92.7063	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:105:53,52:53:1904:52:1864:-136.356,0,-140.03	0/1:30:17,13:17:612:13:459:-32.6132,0,-46.3825	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:85:39,46:39:1396:46:1631:-121.486,0,-100.352	1/1:26:0,26:0:0:26:908:-82.0316,-7.82678,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:49:0,49:0:0:49:1730:-155.823,-14.7505,0	0/1:128:75,53:75:2671:53:1857:-128.834,0,-202.104	1/1:6:0,6:0:0:6:212:-19.4248,-1.80618,0	1/1:78:0,78:0:0:78:2722:-245.215,-23.4803,0	1/1:70:0,70:0:0:70:2499:-225.16,-21.0721,0	1/1:66:2,64:2:72:64:2259:-196.734,-13.0313,0	0/1:56:27,29:27:972:29:1024:-75.5986,0,-70.9402	0/1:74:40,34:40:1436:34:1192:-85.0783,0,-107.261	1/1:110:2,108:2:72:108:3852:-340.037,-26.2766,0	1/1:70:1,69:1:36:69:2458:-217.875,-17.4738,0	0/1:57:28,29:28:1004:29:1017:-74.6729,0,-73.5172	0/1:81:45,36:45:1612:36:1252:-88.5721,0,-120.987	0/1:19:11,8:11:381:8:284:-20.1838,0,-28.9011	1/1:23:0,23:0:0:23:824:-74.4719,-6.92369,0	1/1:72:0,72:0:0:72:2534:-228.019,-21.6742,0	0/1:88:56,32:56:2004:32:1133:-75.786,0,-154.143	1/1:120:0,120:0:0:120:4268:-384.116,-36.1236,0	1/1:52:0,52:0:0:52:1828:-164.708,-15.6536,0	0/1:113:57,56:57:2052:56:1974:-143.904,0,-150.935	0/1:12:3,9:3:108:9:324:-25.8796,0,-6.46281	1/1:75:0,75:0:0:75:2671:-240.635,-22.5773,0	0/1:101:39,61:39:1400:61:2161:-164.205,0,-95.8364	1/1:95:0,95:0:0:95:3377:-304.146,-28.5979,0	1/1:70:0,70:0:0:70:2464:-221.839,-21.0721,0	0/1:88:46,42:46:1648:42:1492:-108.078,0,-122.118	1/1:67:0,67:0:0:67:2383:-214.701,-20.169,0	1/1:145:1,144:1:36:144:5039:-449.992,-40.0511,0	0/1:32:13,19:13:468:19:658:-49.9001,0,-32.8267	1/1:87:0,87:0:0:87:3085:-277.878,-26.1896,0	0/1:115:58,57:58:2080:57:2036:-148.894,0,-152.852	0/1:79:45,34:45:1620:34:1186:-83.2619,0,-122.309	0/1:140:80,60:80:2872:60:2123:-149.192,0,-216.572	0/1:96:64,32:64:2292:32:1102:-70.5745,0,-177.643	1/1:99:0,99:0:0:99:3465:-311.964,-29.802,0	1/1:135:0,135:0:0:135:4773:-429.641,-40.6391,0
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chr12	23248188	.	T	G	51587.3	PASS	AB=0.511422;ABP=9.65724;AC=47;AF=0.25;AN=188;AO=3024;CIGAR=1X;DP=11714;DPB=11714;DPRA=1.10135;EPP=6500.24;EPPR=18697.6;GTI=1;LEN=1;MEANALT=1.07273;MQM=59.9884;MQMR=59.9904;NS=94;NUMALT=1;ODDS=3.09565;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107947;QR=311410;RO=8685;RPL=8;RPP=6500.24;RPPR=18697.6;RPR=3016;RUN=1;SAF=3024;SAP=6569.54;SAR=0;SRF=8685;SRP=18862.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:201:83,118:83:2971:118:4232:-320.552,0,-207.115	0/1:239:126,113:126:4516:113:4034:-291.303,0,-334.661	0/0:225:224,1:224:8032:1:36:0,-64.1335,-719.3	0/1:131:68,63:68:2431:63:2256:-163.868,0,-179.61	0/1:30:8,22:8:288:22:792:-62.5748,0,-17.2365	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888	0/1:258:121,136:121:4352:136:4871:-360.817,0,-314.127	0/1:111:46,65:46:1656:65:2327:-176.267,0,-115.914	0/0:125:125,0:125:4472:0:0:0,-37.6287,-402.65	0/0:122:122,0:122:4383:0:0:0,-36.7257,-394.641	0/1:90:51,39:51:1828:39:1387:-98.0355,0,-137.708	0/1:91:46,45:46:1652:45:1608:-117.616,0,-121.575	0/0:98:98,0:98:3502:0:0:0,-29.5009,-315.39	0/0:70:70,0:70:2520:0:0:0,-21.0721,-227.051	0/1:66:34,32:34:1220:32:1148:-83.7619,0,-90.2388	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.28	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:80:79,0:79:2832:0:0:0,-23.7814,-254.759	0/1:210:109,101:109:3920:101:3607:-261.62,0,-289.775	0/1:136:73,63:73:2615:63:2256:-162.363,0,-194.657	0/0:100:100,0:100:3588:0:0:0,-30.103,-323.126	0/0:64:64,0:64:2291:0:0:0,-19.2659,-206.451	0/0:140:136,4:136:4876:4:144:0,-28.8306,-425.678	0/1:88:47,41:47:1680:41:1476:-106.641,0,-124.996	0/1:351:164,187:164:5892:187:6658:-493.639,0,-424.723	0/0:292:292,0:292:10472:0:0:0,-87.9008,-942.392	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.843	0/1:280:144,136:144:5168:136:4851:-352.457,0,-380.97	0/1:227:98,129:98:3516:129:4607:-346.461,0,-248.315	0/1:211:107,103:107:3832:103:3651:-265.218,0,-281.5	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:16:8,8:8:288:8:288:-21.4509,0,-21.4509	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/1:206:93,113:93:3348:113:4023:-300.228,0,-239.523	0/0:179:179,0:179:6427:0:0:0,-53.8844,-578.514	0/0:96:96,0:96:3424:0:0:0,-28.8989,-308.372	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:183:183,0:183:6572:0:0:0,-55.0885,-591.559	0/0:70:70,0:70:2512:0:0:0,-21.0721,-226.332	0/0:273:273,0:273:9756:0:0:0,-82.1812,-877.987	0/0:85:85,0:85:3048:0:0:0,-25.5875,-274.549	0/1:69:37,32:37:1332:32:1131:-81.3267,0,-99.4113	0/1:90:43,47:43:1544:47:1688:-125.114,0,-112.16	0/0:230:229,1:229:8201:1:36:0,-65.6386,-734.502	0/0:197:197,0:197:7025:0:0:0,-59.3029,-632.228	0/0:106:106,0:106:3759:0:0:0,-31.9092,-338.509	0/1:223:117,106:117:4212:106:3760:-271.47,0,-312.126	0/1:177:94,82:94:3360:82:2936:-211.133,0,-249.276	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:267:141,126:141:5060:126:4507:-325.423,0,-375.169	0/1:53:25,27:25:892:27:972:-71.7845,0,-64.5864	0/1:17:9,8:9:320:8:288:-21.1499,0,-24.0248	0/1:172:84,88:84:3008:88:3116:-228.89,0,-219.174	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/1:18:8,10:8:288:10:356:-26.9627,0,-20.8489	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/0:69:68,1:68:2423:1:36:0,-17.1728,-214.723	0/1:246:124,122:124:4447:122:4343:-316.992,0,-326.346	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:231:231,0:231:8281:0:0:0,-69.5379,-745.296	0/0:211:211,0:211:7550:0:0:0,-63.5173,-679.539	0/0:98:92,6:92:3300:6:216:0,-9.71043,-277.428	0/1:90:52,38:52:1859:38:1356:-95.2478,0,-140.496	0/1:158:62,96:62:2228:96:3417:-260.181,0,-153.221	0/0:102:99,3:99:3548:3:108:0,-20.6299,-309.453	0/0:72:71,1:71:2552:1:36:0,-18.0759,-226.332	0/1:73:32,41:32:1144:41:1454:-109.179,0,-81.2943	0/1:115:55,60:55:1976:60:2159:-159.958,0,-143.496	0/1:47:27,20:27:964:20:720:-50.9804,0,-72.7706	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/0:67:67,0:67:2404:0:0:0,-20.169,-216.616	0/1:252:114,138:114:4075:138:4925:-367.541,0,-291.077	0/0:210:209,1:209:7515:1:36:0,-59.618,-672.788	0/0:151:151,0:151:5424:0:0:0,-45.4555,-488.286	0/1:171:91,80:91:3243:80:2860:-206.162,0,-240.616	0/1:29:12,17:12:432:17:612:-46.6836,0,-30.4913	0/0:193:193,0:193:6895:0:0:0,-58.0988,-620.619	0/1:94:42,52:42:1508:52:1850:-138.478,0,-107.718	0/0:367:367,0:367:13154:0:0:0,-110.478,-1183.66	0/0:109:108,1:108:3880:1:36:0,-29.214,-345.795	0/1:76:35,41:35:1260:41:1468:-109.538,0,-90.8272	0/0:108:108,0:108:3880:0:0:0,-32.5112,-349.393	0/0:133:133,0:133:4776:0:0:0,-40.037,-429.995	0/1:35:13,22:13:468:22:788:-60.7087,0,-31.9236	0/0:80:80,0:80:2880:0:0:0,-24.0824,-259.436	0/1:75:43,32:43:1548:32:1132:-79.6113,0,-117.036	0/1:105:50,55:50:1796:55:1957:-144.796,0,-130.314	0/1:164:85,79:85:3060:79:2832:-205.75,0,-226.254	0/1:97:33,64:33:1188:64:2280:-176.262,0,-78.0287	0/0:119:119,0:119:4276:0:0:0,-35.8226,-385.016	0/0:151:151,0:151:5411:0:0:0,-45.4555,-487.119
chr12	23274300	.	G	C	45052.4	PASS	AB=0.504249;ABP=3.84075;AC=47;AF=0.25;AN=188;AO=2690;CIGAR=1X;DP=10934;DPB=10934;DPRA=1.11531;EPP=5844.27;EPPR=17800.5;GTI=1;LEN=1;MEANALT=1.05357;MQM=59.5926;MQMR=59.9576;NS=94;NUMALT=1;ODDS=1.69364;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=95922;QR=293602;RO=8240;RPL=0;RPP=5844.27;RPPR=17800.5;RPR=2690;RUN=1;SAF=0;SAP=5844.27;SAR=2690;SRF=0;SRP=17895.9;SRR=8240;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/1:128:71,57:71:2552:57:2021:-143.615,0,-191.397	0/1:159:66,93:66:2359:93:3318:-250.972,0,-164.704	0/0:279:278,1:278:9939:1:36:0,-80.3891,-890.845	0/1:73:34,39:34:1224:39:1404:-104.684,0,-88.4919	0/1:90:38,52:38:1364:52:1849:-139.591,0,-95.968	0/0:183:183,0:183:6539:0:0:0,-55.0885,-588.559	0/1:147:72,75:72:2560:75:2654:-194.846,0,-186.397	0/1:107:55,52:55:1931:52:1841:-133.753,0,-141.853	0/0:104:103,1:103:3675:1:32:0,-28.1078,-327.754	0/0:75:75,0:75:2658:0:0:0,-22.5772,-239.463	0/1:81:50,31:50:1757:31:1104:-75.2849,0,-134.025	0/1:77:43,34:43:1536:34:1220:-86.9183,0,-115.351	0/0:85:85,0:85:3005:0:0:0,-25.5875,-270.682	0/0:57:57,0:57:2013:0:0:0,-17.1587,-181.441	0/1:49:25,24:25:888:24:864:-63.3214,0,-65.4886	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/0:87:87,0:87:3111:0:0:0,-26.1896,-280.216	0/0:47:47,0:47:1675:0:0:0,-14.1484,-151.036	0/1:304:158,146:158:5644:146:5216:-377.642,0,-416.542	0/1:263:126,136:126:4495:136:4853:-357.783,0,-325.639	0/0:150:150,0:150:5368:0:0:0,-45.1545,-483.252	0/0:126:126,0:126:4497:0:0:0,-37.9298,-404.862	0/0:100:93,7:93:3327:7:252:0,-7.09187,-276.636	0/1:100:38,62:38:1344:62:2223:-170.23,0,-91.1544	0/1:389:204,185:204:7255:185:6616:-478.288,0,-535.248	0/0:282:281,0:281:10003:0:0:0,-84.5894,-899.83	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/1:388:185,203:185:6553:203:7258:-536.191,0,-473.047	0/1:204:98,106:98:3515:106:3754:-276.602,0,-255.149	0/1:188:89,99:89:3166:99:3532:-261.48,0,-228.557	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/0:8:8,0:8:279:0:0:0,-2.40824,-25.4475	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:209:107,102:107:3776:102:3643:-265.06,0,-277.124	0/0:268:268,0:268:9501:0:0:0,-80.676,-855.045	0/0:86:86,0:86:3066:0:0:0,-25.8886,-276.168	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:228:226,1:226:8091:1:36:0,-65.0754,-724.627	0/0:35:35,0:35:1243:0:0:0,-10.536,-112.174	0/0:141:141,0:141:5035:0:0:0,-42.4452,-453.297	0/0:74:74,0:74:2655:0:0:0,-22.2762,-239.195	0/1:75:37,38:37:1320:38:1351:-98.8884,0,-96.5247	0/1:65:30,35:30:1054:35:1240:-92.3165,0,-75.6022	0/0:171:171,0:171:6098:0:0:0,-51.4761,-548.92	0/0:207:207,0:207:7337:0:0:0,-62.3132,-660.382	0/0:107:105,2:105:3756:2:72:0,-25.3735,-331.403	0/1:156:85,71:85:3031:71:2529:-180.882,0,-226.06	0/1:124:55,69:55:1959:69:2468:-184.853,0,-139.257	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:159:88,71:88:3137:71:2527:-179.811,0,-234.691	0/1:47:28,19:28:1000:19:663:-45.7706,0,-76.1445	0/1:21:14,7:14:504:7:252:-16.7073,0,-39.3765	0/1:161:91,70:91:3236:70:2495:-176.314,0,-242.995	0/0:40:40,0:40:1423:0:0:0,-12.0412,-128.367	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:66:66,0:66:2360:0:0:0,-19.868,-212.659	0/1:151:71,80:71:2540:80:2845:-210.16,0,-183.393	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5054	0/0:301:301,0:301:10732:0:0:0,-90.61,-965.743	0/0:222:220,2:220:7856:2:72:0,-59.9919,-700.231	0/0:88:86,2:86:3075:2:72:0,-19.6539,-270.131	0/1:117:57,60:57:2029:60:2144:-157.984,0,-147.655	0/1:160:91,69:91:3242:69:2468:-174.15,0,-243.836	0/0:125:124,1:124:4430:1:36:0,-34.0305,-395.273	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:57:30,27:30:1063:27:968:-70.274,0,-78.8221	0/1:92:42,50:42:1491:50:1796:-134.168,0,-106.789	0/1:24:13,11:13:464:11:396:-28.7565,0,-33.8451	0/0:99:98,1:98:3476:1:36:0,-26.2037,-309.453	0/0:77:77,0:77:2716:0:0:0,-23.1793,-244.683	0/1:199:91,108:91:3252:108:3812:-283.309,0,-232.997	0/0:217:217,0:217:7721:0:0:0,-65.3235,-694.925	0/0:128:128,0:128:4577:0:0:0,-38.5318,-412.092	0/1:116:52,64:52:1860:64:2285:-170.986,0,-132.76	0/1:19:13,6:13:460:6:216:-14.0709,0,-36.0158	0/0:141:141,0:141:5030:0:0:0,-42.4452,-452.836	0/1:134:55,79:55:1941:79:2812:-212.977,0,-134.626	0/0:262:262,0:262:9340:0:0:0,-78.8699,-840.526	0/0:108:108,0:108:3835:0:0:0,-32.5112,-345.343	0/1:64:32,31:32:1113:31:1112:-81.0365,0,-81.148	0/0:105:105,0:105:3738:0:0:0,-31.6081,-336.62	0/0:150:149,1:149:5295:1:36:0,-41.5562,-473.088	0/1:48:23,25:23:820:25:885:-65.5124,0,-59.6731	0/0:111:111,0:111:3972:0:0:0,-33.4143,-357.671	0/1:92:39,53:39:1392:53:1900:-143.576,0,-97.8843	0/1:49:26,23:26:932:23:820:-59.3521,0,-69.4484	0/1:104:53,51:53:1885:51:1800:-130.954,0,-138.619	0/1:67:28,39:28:1008:39:1404:-106.468,0,-70.8673	0/0:175:175,0:175:6247:0:0:0,-52.6802,-562.327	0/0:83:83,0:83:2949:0:0:0,-24.9855,-265.641
chr12	23282793	.	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chr12	23309663	.	A	T	202886	PASS	AB=0.50312;ABP=3.52518;AC=141;AF=0.75;AN=188;AO=9615;CIGAR=1X;DP=12658;DPB=12658;DPRA=0;EPP=20881.7;EPPR=6602.11;GTI=1;LEN=1;MEANALT=1.04255;MQM=59.9911;MQMR=59.9727;NS=94;NUMALT=1;ODDS=0.345913;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=343286;QR=108659;RO=3039;RPL=0;RPP=20881.7;RPPR=6593.43;RPR=9615;RUN=1;SAF=0;SAP=20881.7;SAR=9615;SRF=1;SRP=6593.43;SRR=3038;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:96:0,96:0:0:96:3408:-306.933,-28.8989,0	0/1:136:78,58:78:2776:58:2072:-145.811,0,-209.139	0/1:157:110,47:110:3933:47:1666:-102.941,0,-306.899	1/1:387:0,387:0:0:387:13822:-1243.76,-116.499,0	0/1:115:61,54:61:2192:54:1934:-139.718,0,-162.927	0/1:122:59,63:59:2120:63:2247:-165.766,0,-154.343	1/1:231:0,231:0:0:231:8262:-743.588,-69.5379,0	0/1:115:56,59:56:1997:59:2124:-156.81,0,-145.383	0/1:123:53,70:53:1870:70:2495:-187.775,0,-131.549	1/1:88:1,87:1:36:87:3097:-275.359,-22.8924,0	1/1:71:0,71:0:0:71:2542:-229.031,-21.3731,0	0/1:108:48,60:48:1705:60:2129:-159.366,0,-121.223	0/1:106:59,46:59:2116:46:1644:-116.281,0,-158.741	1/1:109:0,109:0:0:109:3891:-350.385,-32.8123,0	1/1:107:0,107:0:0:107:3810:-343.1,-32.2102,0	0/1:74:38,36:38:1351:36:1260:-91.4234,0,-99.6134	1/1:95:0,95:0:0:95:3389:-305.224,-28.5979,0	1/1:102:0,102:0:0:102:3652:-328.884,-30.7051,0	1/1:59:0,58:0:0:58:2077:-186.84,-17.4597,0	0/1:249:138,111:138:4951:111:3984:-283.788,0,-370.781	0/1:156:67,89:67:2381:89:3175:-239.014,0,-167.586	1/1:210:0,210:0:0:210:7503:-675.312,-63.2163,0	1/1:195:0,195:0:0:195:6939:-624.576,-58.7009,0	1/1:129:5,124:5:180:124:4429:-382.229,-22.2808,0	0/1:90:40,50:40:1440:50:1788:-134.11,0,-102.805	0/1:419:230,189:230:8241:189:6738:-480.362,0,-615.567	1/1:297:2,295:2:72:295:10510:-938.978,-82.5692,0	1/1:55:0,55:0:0:55:1972:-177.755,-16.5567,0	0/1:396:191,205:191:6837:205:7272:-535.322,0,-496.082	0/1:165:85,80:85:3047:80:2823:-204.636,0,-224.789	0/1:213:105,108:105:3757:108:3841:-281.766,0,-274.209	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:9:8,1:8:288:1:36:-0.889005,0,-23.5581	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:294:125,169:125:4460:169:6051:-456.19,0,-313.065	1/1:234:0,234:0:0:234:8319:-748.72,-70.441,0	1/1:77:0,77:0:0:77:2762:-248.821,-23.1793,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:210:0,210:0:0:210:7495:-674.591,-63.2163,0	1/1:75:0,75:0:0:75:2670:-240.546,-22.5773,0	1/1:219:0,219:0:0:219:7811:-703.023,-65.9256,0	1/1:120:1,119:1:36:119:4239:-378.091,-32.5253,0	0/1:69:33,36:33:1188:36:1292:-95.8127,0,-86.4575	0/1:165:93,72:93:3332:72:2584:-183.139,0,-250.428	1/1:142:0,142:0:0:142:5088:-457.976,-42.7463,0	1/1:233:0,233:0:0:233:8317:-748.526,-70.14,0	1/1:84:0,84:0:0:84:3012:-271.31,-25.2865,0	0/1:253:113,140:113:4052:140:4982:-372.368,0,-288.706	0/1:258:106,152:106:3755:152:5445:-412.511,0,-260.482	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	0/1:142:85,57:85:3047:57:2040:-141.126,0,-231.712	0/1:82:43,39:43:1525:39:1400:-101.615,0,-112.857	0/1:48:24,24:24:864:24:860:-63.2724,0,-63.6331	0/1:108:53,55:53:1891:55:1947:-142.994,0,-137.956	1/1:92:0,92:0:0:92:3270:-294.518,-27.6948,0	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:109:1,108:1:36:108:3884:-346.154,-29.214,0	0/1:162:72,90:72:2561:90:3232:-242.334,0,-181.972	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:346:0,346:0:0:346:12363:-1112.51,-104.156,0	1/1:241:1,240:1:36:240:8537:-764.734,-68.95,0	0/1:55:7,48:7:248:48:1720:-138.529,0,-6.10754	0/1:144:65,78:65:2332:78:2800:-208.832,0,-166.732	0/1:278:142,136:142:5078:136:4854:-353.325,0,-373.477	1/1:39:0,39:0:0:39:1381:-124.587,-11.7402,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	0/1:76:36,40:36:1292:40:1440:-107.019,0,-93.7055	0/1:114:61,53:61:2160:53:1892:-136.24,0,-160.347	0/1:33:13,20:13:460:20:712:-54.4727,0,-31.8014	1/1:167:0,167:0:0:167:5977:-538.035,-50.272,0	1/1:84:0,84:0:0:84:2989:-269.241,-25.2865,0	0/1:225:80,145:80:2867:145:5186:-399.148,0,-190.535	1/1:264:0,264:0:0:264:9457:-851.087,-79.4719,0	1/1:119:0,119:0:0:119:4263:-383.848,-35.8226,0	0/1:173:97,75:97:3479:75:2660:-187.508,0,-261.183	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	1/1:143:0,143:0:0:143:5109:-459.952,-43.0473,0	0/1:160:85,75:85:3032:75:2682:-193.46,0,-224.946	1/1:343:1,342:1:36:342:12216:-1095.68,-99.655,0	1/1:147:2,145:2:72:145:5193:-460.67,-37.4147,0	0/1:96:48,48:48:1724:48:1716:-125.827,0,-126.547	1/1:146:0,146:0:0:146:5188:-467.062,-43.9504,0	1/1:222:1,221:1:36:221:7911:-708.416,-63.2304,0	0/1:48:19,29:19:680:29:1020:-77.6608,0,-47.0797	1/1:122:0,122:0:0:122:4367:-393.203,-36.7257,0	0/1:85:43,42:43:1535:42:1500:-109.707,0,-112.855	0/1:46:20,26:20:716:26:932:-70.3515,0,-50.9203	0/1:97:53,44:53:1899:44:1578:-113.112,0,-141.987	0/1:88:61,27:61:2188:27:944:-58.7807,0,-170.695	1/1:119:0,119:0:0:119:4268:-384.297,-35.8226,0	1/1:146:1,145:1:36:145:5184:-464.808,-42.0589,0
chr12	23309690	.	C	A	51967.6	PASS	AB=0.498702;ABP=3.10051;AC=47;AF=0.25;AN=188;AO=3085;CIGAR=1X;DP=12783;DPB=12783;DPRA=1.01797;EPP=6702;EPPR=20890.7;GTI=1;LEN=1;MEANALT=1.01852;MQM=59.9909;MQMR=59.9864;NS=94;NUMALT=1;ODDS=0.876587;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110256;QR=345837;RO=9695;RPL=3085;RPP=6702;RPPR=20890.7;RPR=0;RUN=1;SAF=0;SAP=6702;SAR=3085;SRF=0;SRP=21055.4;SRR=9695;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:96:96,0:96:3444:0:0:0,-28.8989,-310.164	0/1:142:60,82:60:2126:82:2923:-220.556,0,-148.859	0/1:156:46,110:46:1637:110:3943:-308.099,0,-100.656	0/0:385:385,0:385:13755:0:0:0,-115.897,-1237.73	0/1:115:54,61:54:1902:61:2184:-162.207,0,-136.836	0/1:123:62,61:62:2205:61:2196:-160.878,0,-161.687	0/0:235:235,0:235:8379:0:0:0,-70.742,-754.115	0/1:119:61,58:61:2177:58:2080:-151.648,0,-160.372	0/1:127:71,56:71:2501:56:1974:-139.702,0,-187.109	0/0:88:87,1:87:3113:1:36:0,-22.8924,-276.797	0/0:78:78,0:78:2779:0:0:0,-23.4803,-250.351	0/1:108:59,49:59:2120:49:1752:-125.453,0,-158.557	0/1:106:45,61:45:1616:61:2196:-165.996,0,-113.821	0/0:108:108,0:108:3855:0:0:0,-32.5112,-347.146	0/0:110:110,0:110:3944:0:0:0,-33.1133,-355.151	0/1:71:33,38:33:1188:38:1364:-101.688,0,-85.8555	0/0:96:96,0:96:3416:0:0:0,-28.8989,-307.653	0/0:102:102,0:102:3641:0:0:0,-30.7051,-327.894	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:248:109,139:109:3889:139:4963:-372.164,0,-275.544	0/1:161:92,69:92:3292:69:2476:-174.628,0,-248.034	0/0:212:212,0:212:7553:0:0:0,-63.8184,-679.811	0/0:201:201,0:201:7224:0:0:0,-60.507,-650.21	0/0:134:129,5:129:4627:5:176:0,-24.153,-400.406	0/1:92:51,41:51:1816:41:1460:-104.001,0,-136.027	0/1:426:194,232:194:6865:232:8309:-619.579,0,-489.682	0/0:295:294,1:294:10476:1:36:0,-85.2056,-939.154	0/0:57:57,0:57:2032:0:0:0,-17.1587,-183.153	0/1:402:205,196:205:7276:196:6984:-507.596,0,-533.862	0/1:173:82,91:82:2936:91:3268:-242.261,0,-212.396	0/1:219:113,106:113:3999:106:3778:-274.247,0,-294.173	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:302:174,128:174:6188:128:4596:-322.89,0,-466.109	0/0:244:244,0:244:8678:0:0:0,-73.4513,-781.017	0/0:77:77,0:77:2760:0:0:0,-23.1793,-248.641	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	0/0:213:212,0:212:7561:0:0:0,-63.8184,-680.209	0/0:77:77,0:77:2759:0:0:0,-23.1793,-248.551	0/0:221:221,0:221:7879:0:0:0,-66.5276,-709.135	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.611	0/1:73:39,34:39:1396:34:1220:-88.1316,0,-103.964	0/1:169:74,95:74:2652:95:3380:-253.541,0,-188.052	0/0:139:139,0:139:4949:0:0:0,-41.8432,-445.558	0/0:234:233,0:233:8309:0:0:0,-70.14,-747.458	0/0:90:90,0:90:3193:0:0:0,-27.0927,-287.594	0/1:258:141,117:141:5041:117:4177:-298.446,0,-376.169	0/1:257:150,107:150:5361:107:3825:-267.081,0,-405.257	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:140:58,82:58:2080:82:2913:-220.259,0,-145.326	0/1:86:41,45:41:1472:45:1580:-116.599,0,-106.888	0/1:48:24,24:24:864:24:864:-63.6331,0,-63.6331	0/1:109:53,56:53:1896:56:1999:-147.371,0,-138.106	0/0:96:96,0:96:3429:0:0:0,-28.8989,-308.822	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:9:9,0:9:316:0:0:0,-2.70927,-28.7789	0/0:111:110,1:110:3924:1:32:0,-30.215,-350.152	0/1:159:88,71:88:3144:71:2537:-180.716,0,-235.322	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:354:354,0:354:12682:0:0:0,-106.565,-1141.2	0/0:242:241,1:241:8568:1:36:0,-69.251,-767.52	0/1:55:48,7:48:1715:7:252:-6.47231,0,-138.078	0/1:144:77,67:77:2724:67:2400:-172.909,0,-202.054	0/1:278:134,144:134:4792:144:5163:-381.123,0,-347.751	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/0:31:31,0:31:1116:0:0:0,-9.33193,-100.752	0/1:75:37,38:37:1324:38:1364:-100.483,0,-96.8848	0/1:114:53,61:53:1876:61:2157:-160.078,0,-134.799	0/1:35:22,13:22:758:13:468:-31.9236,0,-57.9981	0/0:168:168,0:168:5958:0:0:0,-50.573,-536.328	0/0:84:84,0:84:2980:0:0:0,-25.2865,-268.432	0/1:229:148,81:148:5258:81:2883:-190.771,0,-404.422	0/0:267:267,0:267:9524:0:0:0,-80.375,-857.115	0/0:126:126,0:126:4489:0:0:0,-37.9298,-404.179	0/1:171:76,95:76:2694:95:3391:-253.929,0,-191.226	0/1:13:5,8:5:165:8:288:-22.354,0,-11.2602	0/0:146:146,0:146:5232:0:0:0,-43.9504,-471.017	0/1:166:77,89:77:2752:89:3166:-235.193,0,-197.951	0/0:334:334,0:334:11907:0:0:0,-100.544,-1071.48	0/0:149:147,2:147:5249:2:72:0,-38.0167,-465.71	0/1:95:49,46:49:1752:46:1644:-119.651,0,-129.366	0/0:144:144,0:144:5118:0:0:0,-43.3483,-460.763	0/0:218:217,1:217:7754:1:36:0,-62.0263,-693.274	0/1:47:28,19:28:1008:19:684:-47.7419,0,-76.8879	0/0:114:114,0:114:4065:0:0:0,-34.3174,-366.037	0/1:84:41,43:41:1472:43:1531:-112.796,0,-107.49	0/1:47:28,19:28:1000:19:684:-47.7419,0,-76.167	0/1:96:43,53:43:1500:53:1904:-142.739,0,-106.389	0/1:90:29,61:29:1036:61:2192:-170.453,0,-66.4612	0/0:121:121,0:121:4344:0:0:0,-36.4246,-391.105	0/0:144:144,0:144:5163:0:0:0,-43.3483,-463.272
chr12	23335714	.	G	T	39223.2	PASS	AB=0.492286;ABP=5.58988;AC=49;AF=0.263441;AN=186;AO=2487;CIGAR=1X;DP=10264;DPB=10264;DPRA=1.14736;EPP=5403.46;EPPR=16875.4;GTI=2;LEN=1;MEANALT=1.03704;MQM=59.9972;MQMR=59.9956;NS=93;NUMALT=1;ODDS=1.0504;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86525;QR=276621;RO=7774;RPL=2487;RPP=5403.46;RPPR=16875.4;RPR=0;RUN=1;SAF=0;SAP=5403.46;SAR=2487;SRF=0;SRP=16884;SRR=7774;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:63:63,0:63:2215:0:0:0,-18.9649,-199.615	0/1:145:78,67:78:2768:67:2324:-165.772,0,-205.714	0/1:120:65,55:65:2290:55:1937:-138.481,0,-170.235	0/0:251:250,1:250:8913:1:36:0,-71.9603,-798.558	0/1:84:26,58:26:915:58:1965:-151.831,0,-57.379	0/1:43:17,26:17:600:26:901:-68.4579,0,-41.3849	0/0:48:47,1:47:1684:1:32:0,-11.2501,-148.648	0/1:248:135,113:135:4796:113:3921:-278.433,0,-357.142	0/1:143:75,67:75:2643:67:2372:-170.633,0,-195.01	0/0:196:196,0:196:6990:0:0:0,-59.0019,-629.164	0/0:38:38,0:38:1359:0:0:0,-11.4391,-122.61	0/1:58:28,30:28:999:30:1060:-78.2515,0,-72.7648	0/1:74:37,37:37:1328:37:1289:-94.0326,0,-97.546	0/0:75:75,0:75:2675:0:0:0,-22.5772,-240.995	0/0:64:64,0:64:2259:0:0:0,-19.2659,-203.57	0/1:56:25,31:25:900:31:1096:-82.0923,0,-64.4633	0/0:91:91,0:91:3251:0:0:0,-27.3937,-292.811	0/0:90:90,0:90:3200:0:0:0,-27.0927,-288.225	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:214:82,131:82:2913:131:4527:-343.28,0,-198.074	0/1:187:97,90:97:3426:90:3102:-223.116,0,-252.261	0/0:111:111,0:111:3949:0:0:0,-33.4143,-355.602	0/0:81:80,1:80:2845:1:36:0,-20.7852,-252.689	0/0:164:152,12:152:5407:12:424:0,-10.8725,-448.265	0/1:73:28,45:28:1008:45:1549:-117.72,0,-69.0612	0/1:481:236,245:236:8397:245:8562:-625.81,0,-610.944	0/0:198:198,0:198:7040:0:0:0,-59.6039,-633.666	0/0:35:35,0:35:1247:0:0:0,-10.536,-112.534	0/1:236:119,117:119:4240:117:4059:-294.462,0,-310.369	0/1:207:107,100:107:3816:100:3533:-255.869,0,-281.326	0/1:92:48,44:48:1696:44:1509:-108.404,0,-125.231	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:4:0,4:0:0:4:129:-11.9277,-1.20412,0	0/1:240:134,106:134:4804:106:3751:-265.547,0,-360.268	0/0:148:148,0:148:5259:0:0:0,-44.5524,-473.446	0/0:52:52,0:52:1852:0:0:0,-15.6536,-166.96	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:185:185,0:185:6597:0:0:0,-55.6905,-593.812	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:175:175,0:175:6203:0:0:0,-52.6802,-558.369	0/0:103:103,0:103:3662:0:0:0,-31.0061,-329.785	0/1:74:42,32:42:1476:32:1120:-78.8314,0,-110.856	0/1:87:46,41:46:1636:41:1432:-102.986,0,-121.339	0/0:194:193,0:193:6861:0:0:0,-58.0988,-617.349	0/0:211:211,0:211:7506:0:0:0,-63.5173,-675.585	0/0:89:89,0:89:3176:0:0:0,-26.7917,-286.065	0/1:177:87,90:87:3074:90:3145:-229.996,0,-223.605	0/1:209:116,93:116:4148:93:3197:-225.039,0,-310.589	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:122:57,65:57:2044:65:2242:-165.317,0,-147.506	0/1:18:15,3:15:536:3:108:-4.65663,0,-43.1563	0/1:10:4,6:4:140:6:212:-16.4145,0,-9.93428	0/1:104:38,66:38:1356:66:2250:-171.457,0,-91.0334	0/0:47:47,0:47:1661:0:0:0,-14.1484,-149.776	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:93:93,0:93:3311:0:0:0,-27.9958,-298.209	0/1:120:60,60:60:2148:60:2112:-154.226,0,-157.464	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:283:281,2:281:9945:2:53:0,-80.1572,-889.963	0/0:178:172,6:172:6105:6:208:0,-34.5243,-530.497	0/1:135:121,14:121:4294:14:492:-3.9733,0,-345.998	0/1:109:64,45:64:2288:45:1557:-107.606,0,-173.369	0/1:245:122,123:122:4352:123:4277:-311.36,0,-318.104	0/0:136:136,0:136:4841:0:0:0,-40.9401,-435.845	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/1:64:43,21:43:1528:21:721:-45.9408,0,-118.547	0/1:104:51,53:51:1812:53:1861:-136.461,0,-132.054	0/1:16:8,8:8:288:8:284:-21.0869,0,-21.4509	0/0:101:101,0:101:3547:0:0:0,-30.404,-319.439	0/0:101:101,0:101:3581:0:0:0,-30.404,-322.498	0/1:101:52,49:52:1840:49:1637:-117.204,0,-135.476	0/0:222:222,0:222:7902:0:0:0,-66.8287,-711.208	0/0:103:103,0:103:3692:0:0:0,-31.0061,-332.482	0/1:143:68,75:68:2417:75:2610:-192.101,0,-174.738	0/1:20:8,12:8:288:12:397:-30.0277,0,-20.2468	0/0:175:175,0:175:6228:0:0:0,-52.6802,-560.618	0/1:105:44,61:44:1564:61:2145:-161.709,0,-109.444	0/0:298:296,2:296:10555:2:68:0,-83.2492,-943.407	0/0:142:142,0:142:5091:0:0:0,-42.7463,-458.332	0/1:65:30,35:30:1076:35:1217:-90.2643,0,-77.5859	0/0:130:130,0:130:4655:0:0:0,-39.1339,-419.111	0/0:183:183,0:183:6530:0:0:0,-55.0885,-587.785	0/1:39:17,22:17:599:22:788:-59.5046,0,-42.4979	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/1:52:31,21:31:1112:21:736:-50.9088,0,-84.7378	0/1:19:10,9:10:360:9:312:-22.6958,0,-27.0247	0/1:60:25,35:25:896:35:1232:-93.1222,0,-62.8986	0/1:71:25,46:25:887:46:1602:-123.092,0,-58.775	0/0:143:143,0:143:5058:0:0:0,-43.0473,-455.369	0/0:113:113,0:113:4037:0:0:0,-34.0164,-363.517
chr12	23361850	.	ACAGG	ACAGC,ACAGA	84010.8	PASS	AB=0.501783,0.458991;ABP=3.0645,31.6841;AC=143,45;AF=0.760638,0.239362;AN=188;AO=3108,905;CIGAR=4M1X,4M1X;DP=4180;DPB=4180;DPRA=0,0.999552;EPP=6751.95,1968.19;EPPR=5.18177;GTI=3;LEN=1,1;MEANALT=2.70213,3.25;MQM=52.0901,59.042;MQMR=60;NS=94;NUMALT=2;ODDS=2.76354;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=110253,31297;QR=29;RO=1;RPL=3108,905;RPP=6751.95,1968.19;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=3108,905;SAP=6751.95,1968.19;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10,0:0:0:10,0:347,0:-31.3591,-3.0103,0,-31.3591,-3.0103,-31.3591	1/2:24:0,16,8:0:0:16,8:565,288:-69.1218,-23.8592,-19.0427,-45.6184,0,-43.2102	1/2:100:0,46,53:0:0:46,53:1648,1857:-284.526,-151.234,-137.387,-133.433,0,-117.478	1/1:53:0,52,0:0:0:52,0:1819,0:-163.167,-15.6536,0,-163.167,-15.6536,-163.167	1/2:7:0,5,2:0:0:5,2:180,72:-20.8904,-6.23466,-4.72951,-15.0154,0,-14.4133	1/2:11:0,6,4:0:0:6,4:216,144:-29.423,-11.8796,-10.0735,-17.6644,0,-16.4602	1/1:82:0,79,0:0:0:79,0:2786,0:-250.017,-23.7814,0,-250.017,-23.7814,-250.017	1/2:50:0,23,25:0:0:23,25:828,888:-139.28,-72.4364,-65.5127,-66.951,0,-59.4252	1/2:39:0,12,24:0:0:12,24:432,814:-101.018,-66.0624,-62.45,-35.0284,0,-27.8037	1/1:20:0,20,0:0:0:20,0:712,0:-64.2233,-6.0206,0,-64.2233,-6.0206,-64.2233	1/1:57:0,55,0:0:0:55,0:1907,0:-170.802,-16.5567,0,-170.802,-16.5567,-170.802	1/2:34:0,13,18:0:0:13,18:460,632:-88.3764,-51.4526,-47.5392,-36.9556,0,-31.537	1/2:30:0,15,15:0:0:15,15:540,507:-84.83,-41.1879,-36.6724,-43.9885,0,-39.473	1/1:67:0,67,0:0:0:67,0:2359,0:-207.587,-20.169,0,-207.587,-20.169,-207.587	1/1:48:0,46,0:0:0:46,0:1632,0:-146.018,-13.8474,0,-146.018,-13.8474,-146.018	1/2:33:0,19,13:0:0:19,13:680,440:-90.4884,-35.6586,-29.939,-54.8253,0,-50.9119	1/1:50:0,49,0:0:0:49,0:1752,0:-156.455,-14.7505,0,-156.455,-14.7505,-156.455	1/1:32:0,31,0:0:0:31,0:1087,0:-96.5314,-9.33193,0,-96.5314,-9.33193,-96.5314	1/1:42:0,41,0:0:0:41,0:1449,0:-128.434,-12.3422,0,-128.434,-12.3422,-128.434	1/2:55:0,25,29:0:0:25,29:878,998:-152.373,-81.1671,-73.6414,-71.3259,0,-62.596	1/2:61:0,33,25:0:0:33,25:1184,869:-166.966,-70.7103,-60.7763,-96.3194,0,-88.7937	1/1:45:0,43,0:0:0:43,0:1519,0:-136.138,-12.9443,0,-136.138,-12.9443,-136.138	1/1:9:0,9,0:0:0:9,0:324,0:-29.1069,-2.70927,0,-29.1069,-2.70927,-29.1069	1/1:38:0,33,1:0:0:33,1:1184,36:-105.025,-9.93399,0,-102.087,-6.97267,-101.786	1/2:30:0,18,10:0:0:18,10:648,352:-81.4525,-28.7373,-23.3187,-52.7953,0,-49.785	1/2:149:0,87,59:0:0:87,59:3117,2054:-420.018,-167.034,-140.845,-253.011,0,-235.25	1/1:96:0,92,0:0:0:92,0:3278,0:-292.873,-27.6948,0,-292.873,-27.6948,-292.873	1/1:21:0,20,0:0:0:20,0:712,0:-63.431,-6.0206,0,-63.431,-6.0206,-63.431	1/2:117:0,62,48:0:0:62,48:2186,1666:-311.793,-135.392,-116.728,-176.46,0,-162.011	1/2:30:0,15,15:0:0:15,15:528,506:-84.0256,-41.3275,-36.8121,-43.0414,0,-38.526	1/2:29:0,8,21:0:0:8,21:288,727:-82.1228,-58.645,-56.2367,-23.8325,0,-17.5108	1/1:2:0,1,0:0:0:1,0:36,0:-3.31185,-0.30103,0,-3.31185,-0.30103,-3.31185	1/1:8:0,8,0:0:0:8,0:276,0:-24.971,-2.40824,0,-24.971,-2.40824,-24.971	1/1:3:0,3,0:0:0:3,0:104,0:-9.59817,-0.90309,0,-9.59817,-0.90309,-9.59817	1/2:5:0,3,2:0:0:3,2:108,72:-15.0144,-6.23466,-5.33157,-9.13906,0,-8.537	1/2:12:0,6,5:0:0:6,5:216,180:-31.9913,-14.7397,-12.9335,-17.298,0,-15.7929	1/2:85:0,41,42:0:0:41,42:1442,1464:-234.762,-118.345,-106.002,-116.517,0,-103.874	1/1:106:0,102,1:0:0:102,1:3648,36:-324.005,-30.7051,0,-321.073,-27.747,-320.772	1/1:45:0,45,0:0:0:45,0:1568,0:-140.253,-13.5464,0,-140.253,-13.5464,-140.253	1/2:8:0,3,5:0:0:3,5:108,168:-22.7482,-13.9458,-13.0427,-9.15289,0,-7.64774	1/1:80:0,77,0:0:0:77,0:2738,0:-244.36,-23.1793,0,-244.36,-23.1793,-244.36	1/1:38:0,37,0:0:0:37,0:1305,0:-116.789,-11.1381,0,-116.789,-11.1381,-116.789	1/1:49:0,49,0:0:0:49,0:1741,0:-156.007,-14.7505,0,-156.007,-14.7505,-156.007	1/1:44:0,44,0:0:0:44,0:1572,0:-141.436,-13.2453,0,-141.436,-13.2453,-141.436	1/2:24:0,12,11:0:0:12,11:412,370:-63.2885,-29.9383,-26.3259,-33.3855,0,-30.0742	1/2:70:0,29,40:0:0:29,40:1029,1316:-190.087,-106.363,-97.6333,-83.7658,0,-71.7246	1/1:43:0,42,0:0:0:42,0:1490,0:-130.586,-12.6433,0,-130.586,-12.6433,-130.586	1/1:89:0,85,0:0:0:85,0:3039,0:-272.671,-25.5876,0,-272.671,-25.5876,-272.671	1/1:44:0,42,0:0:0:42,0:1480,0:-133.002,-12.6433,0,-133.002,-12.6433,-133.002	1/2:53:0,24,28:0:0:24,28:864,981:-150.306,-79.8638,-72.639,-70.4942,0,-62.0653	1/2:51:0,20,30:0:0:20,30:711,1072:-144.007,-87.1467,-81.1261,-56.9842,0,-47.9533	1/1:8:0,8,0:0:0:8,0:288,0:-26.1558,-2.40824,0,-26.1558,-2.40824,-26.1558	1/2:75:0,36,32:0:0:36,32:1296,1140:-197.071,-92.9665,-82.1294,-104.152,0,-94.5192	1/2:8:0,6,1:0:0:6,1:216,36:-20.618,-2.98787,-1.18169,-17.6787,0,-17.3777	1/2:11:0,4,7:0:0:4,7:144,241:-31.5652,-19.8594,-18.6552,-12.0587,0,-9.95152	1/2:52:0,30,20:0:0:30,20:1059,701:-142.804,-57.0756,-48.0447,-85.7635,0,-79.7429	1/1:36:0,35,0:0:0:35,0:1245,0:-111.744,-10.5361,0,-111.744,-10.5361,-111.744	1/2:3:0,1,2:0:0:1,2:36,72:-9.16966,-6.23466,-5.93363,-3.29465,0,-2.69259	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chr12	23361857	.	GCC	GCA	59948.6	PASS	AB=0.458178;ABP=35.7035;AC=142;AF=0.755319;AN=188;AO=3008;CIGAR=2M1X;DP=4185;DPB=4188;DPRA=0;EPP=6534.8;EPPR=2511.06;GTI=2;LEN=1;MEANALT=1.23404;MQM=51.8125;MQMR=58.6641;NS=94;NUMALT=1;ODDS=0.805091;PAIRED=0;PAIREDR=0;PAO=2.5;PQA=90;PQR=90;PRO=2.5;QA=105463;QR=40083;RO=1155;RPL=3008;RPP=6534.8;RPPR=2511.06;RPR=0;RUN=1;SAF=3008;SAP=6534.8;SAR=0;SRF=1155;SRP=2511.06;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:10:0,10:0:0:10:352:-31.8046,-3.0103,0	0/1:26:12,14:12:405:14:488:-36.0393,0,-28.7529	0/1:108:62,46:62:2130:46:1605:-110.23,0,-159.422	1/1:48:0,48:0:0:48:1680:-149.252,-14.4494,0	0/1:8:3,5:3:106:5:176:-13.749,0,-7.48086	0/1:12:7,5:7:239:5:180:-12.8505,0,-17.7333	1/1:75:0,75:0:0:75:2645:-237.1,-22.5773,0	0/1:54:33,21:33:1134:21:744:-50.6889,0,-85.6999	0/1:38:26,12:26:907:12:432:-27.4775,0,-69.7712	1/1:20:0,20:0:0:20:696:-62.7915,-6.0206,0	1/1:55:0,55:0:0:55:1886:-168.916,-16.5567,0	0/1:37:21,16:21:724:16:568:-39.621,0,-54.2125	0/1:31:17,14:17:588:14:472:-33.1204,0,-43.7736	1/1:64:0,64:0:0:64:2226:-196.334,-19.2659,0	1/1:47:0,47:0:0:47:1624:-145.286,-14.1484,0	0/1:38:18,20:18:630:20:687:-50.1143,0,-45.5824	1/1:44:0,44:0:0:44:1548:-138.687,-13.2453,0	1/1:30:0,30:0:0:30:1040:-92.6162,-9.0309,0	1/1:42:0,42:0:0:42:1478:-131.22,-12.6433,0	0/1:64:41,23:41:1417:23:805:-53.2558,0,-108.398	0/1:69:35,34:35:1220:34:1197:-86.3951,0,-89.046	1/1:43:0,42:0:0:42:1504:-134.539,-12.6433,0	1/1:9:0,9:0:0:9:324:-29.1069,-2.70927,0	1/1:33:1,32:1:30:32:1106:-96.0482,-6.93442,0	0/1:31:13,18:13:459:18:644:-47.6977,0,-32.3124	0/1:160:73,84:73:2564:84:2937:-215.808,0,-183.341	1/1:88:1,86:1:21:86:3028:-268.577,-24.3427,0	1/1:21:0,21:0:0:21:744:-66.5242,-6.32163,0	0/1:120:56,63:56:1939:63:2218:-161.532,0,-138.495	0/1:32:17,14:17:600:14:488:-34.3107,0,-44.6578	0/1:27:18,8:18:610:8:269:-16.4117,0,-47.1172	1/1:3:0,3:0:0:3:95:-8.4879,-0.90309,0	1/1:8:0,8:0:0:8:288:-26.0343,-2.40824,0	1/1:3:0,3:0:0:3:108:-9.96395,-0.90309,0	0/1:6:3,3:3:99:3:104:-7.87019,0,-7.4304	0/1:11:5,5:5:180:5:176:-12.7298,0,-13.2069	0/1:91:51,39:51:1779:39:1385:-96.5009,0,-131.729	1/1:99:0,99:0:0:99:3514:-314.196,-29.802,0	1/1:43:0,43:0:0:43:1489:-133.341,-12.9443,0	0/1:7:5,2:5:180:2:72:-4.71649,0,-14.4449	1/1:72:1,71:1:28:71:2481:-220.148,-19.2862,0	1/1:34:0,34:0:0:34:1198:-107.558,-10.235,0	1/1:41:0,41:0:0:41:1440:-129.323,-12.3422,0	1/1:40:0,40:0:0:40:1407:-126.668,-12.0412,0	0/1:29:19,10:19:654:10:332:-21.4259,0,-50.2216	0/1:74:44,28:44:1555:28:1004:-68.5384,0,-118.203	1/1:37:0,36:0:0:36:1265:-110.93,-10.8371,0	1/1:82:0,82:0:0:82:2914:-258.987,-24.6845,0	1/1:40:0,39:0:0:39:1356:-121.522,-11.7402,0	0/1:60:35,24:35:1232:24:843:-58.0651,0,-93.1592	0/1:54:34,19:34:1194:19:658:-43.1042,0,-91.1947	1/1:8:0,8:0:0:8:284:-25.7932,-2.40824,0	0/1:76:39,36:39:1360:36:1268:-89.7958,0,-99.7314	0/1:8:1,7:1:36:7:252:-20.501,0,-1.19003	0/1:12:9,2:9:322:2:68:-2.84803,0,-25.7579	0/1:57:25,32:25:888:32:1124:-83.7298,0,-63.022	1/1:33:0,33:0:0:33:1164:-104.84,-9.93399,0	0/1:4:3,1:3:108:1:36:-2.39156,0,-8.87105	1/1:5:0,5:0:0:5:176:-16.0051,-1.50515,0	1/1:25:0,25:0:0:25:877:-78.9194,-7.52575,0	0/1:110:56,53:56:1937:53:1849:-132.091,0,-141.158	1/1:1:0,1:0:0:1:36:-3.59568,-0.30103,0	1/1:58:0,57:0:0:57:2023:-181.077,-17.1587,0	1/1:91:1,90:1:34:90:3140:-278.659,-24.091,0	0/1:25:3,22:3:104:22:784:-62.9194,0,-2.13719	0/1:28:20,8:20:692:8:288:-17.8196,0,-53.7966	0/1:72:36,36:36:1262:36:1284:-93.7742,0,-92.0434	1/1:22:0,22:0:0:22:772:-69.4116,-6.62266,0	1/1:34:0,34:0:0:34:1188:-106.766,-10.235,0	0/1:22:14,8:14:482:8:271:-17.7379,0,-37.0719	0/1:50:29,21:29:997:21:748:-51.9517,0,-74.8284	0/1:17:12,5:12:426:5:172:-10.1065,0,-33.5427	1/1:38:0,37:0:0:37:1290:-114.798,-11.1381,0	1/1:32:0,32:0:0:32:1097:-98.3927,-9.63296,0	0/1:66:34,32:34:1175:32:1140:-82.6948,0,-86.1713	1/1:52:1,51:1:28:51:1815:-160.5,-12.8538,0	1/1:79:0,79:0:0:79:2760:-245.94,-23.7814,0	0/1:41:23,18:23:787:18:648:-45.8893,0,-58.2839	0/1:8:1,7:1:36:7:240:-19.4674,0,-1.19003	1/1:40:0,40:0:0:40:1413:-126.777,-12.0412,0	0/1:31:14,17:14:493:17:596:-44.2898,0,-35.2992	1/1:86:0,86:0:0:86:3037:-271.038,-25.8886,0	1/1:47:0,47:0:0:47:1639:-147.231,-14.1484,0	0/1:47:25,22:25:855:22:756:-54.1241,0,-63.1121	1/1:30:0,30:0:0:30:1027:-92.3976,-9.0309,0	1/1:76:0,76:0:0:76:2630:-233.378,-22.8783,0	0/1:24:13,11:13:441:11:374:-25.8875,0,-32.6405	1/1:50:0,50:0:0:50:1750:-155.703,-15.0515,0	0/1:44:26,18:26:849:18:624:-42.5078,0,-63.2239	0/1:52:25,27:25:866:27:938:-68.2445,0,-62.5989	0/1:130:71,58:71:2468:58:2002:-139.409,0,-183.217	0/1:41:23,18:23:813:18:613:-42.586,0,-61.0675	1/1:46:0,46:0:0:46:1619:-145.184,-13.8474,0	1/1:49:0,49:0:0:49:1731:-155.033,-14.7505,0
chr12	23375455	.	C	T	105686	PASS	AB=0.562391;ABP=138.219;AC=142;AF=0.755319;AN=188;AO=6438;CIGAR=1X;DP=8202;DPB=8202;DPRA=0;EPP=13982.9;EPPR=3831.32;GTI=1;LEN=1;MEANALT=1.01064;MQM=32.4537;MQMR=44.6948;NS=94;NUMALT=1;ODDS=0.00359441;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=229293;QR=61868;RO=1763;RPL=6438;RPP=13982.9;RPPR=3831.32;RPR=0;RUN=1;SAF=6438;SAP=13982.9;SAR=0;SRF=1763;SRP=3831.32;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:69:0,69:0:0:69:2459:-180.496,-20.7711,0	0/1:102:43,59:43:1514:59:2107:-123.44,0,-101.427	0/1:107:54,53:54:1898:53:1900:-105.573,0,-135.474	1/1:170:1,169:1:36:169:6005:-476.132,-47.6017,0	0/1:63:38,25:38:1309:25:900:-49.6252,0,-97.6616	0/1:56:28,28:28:992:28:1008:-58.4111,0,-70.6083	1/1:71:0,71:0:0:71:2548:-195.791,-21.3731,0	0/1:138:55,83:55:1912:83:2963:-175.728,0,-125.197	0/1:76:35,41:35:1230:41:1451:-85.3064,0,-86.2421	1/1:75:0,75:0:0:75:2661:-214.783,-22.5773,0	1/1:85:0,84:0:0:84:3003:-242.089,-25.2865,0	0/1:75:38,37:38:1338:37:1302:-73.7318,0,-95.5694	0/1:60:23,37:23:801:37:1324:-79.5705,0,-53.2049	1/1:90:0,90:0:0:90:3195:-248.385,-27.0927,0	1/1:46:1,45:1:36:45:1589:-124.347,-10.2739,0	0/1:83:43,40:43:1510:40:1436:-84.0422,0,-108.956	1/1:39:0,39:0:0:39:1400:-105.523,-11.7402,0	1/1:19:0,19:0:0:19:684:-50.8869,-5.71957,0	1/1:37:0,37:0:0:37:1328:-97.5624,-11.1381,0	0/1:145:62,83:62:2224:83:2951:-193.887,0,-154.712	0/1:156:63,93:63:2174:93:3340:-209.761,0,-146.235	1/1:120:0,120:0:0:120:4288:-314.987,-36.1236,0	1/1:97:1,96:1:36:96:3399:-266.898,-25.6265,0	1/1:58:3,55:3:108:55:1955:-142.666,-7.49561,0	0/1:72:33,39:33:1132:39:1385:-86.1051,0,-78.9926	0/1:253:90,163:90:3126:163:5815:-353.176,0,-199.29	1/1:230:1,229:1:36:229:8172:-629.773,-65.6783,0	1/1:18:0,18:0:0:18:648:-49.9762,-5.41854,0	0/1:157:58,99:58:2065:99:3535:-208.383,0,-135.147	0/1:140:51,89:51:1813:89:3144:-202.184,0,-116.936	0/1:71:35,36:35:1239:36:1268:-79.6619,0,-89.1195	0/1:23:5,18:5:162:18:648:-43.9916,0,-7.86091	1/1:33:0,33:0:0:33:1180:-91.1724,-9.93399,0	1/1:14:0,14:0:0:14:504:-37.4727,-4.21442,0	0/1:22:5,17:5:180:17:612:-39.2809,0,-9.10181	0/1:36:12,24:12:428:24:845:-52.1337,0,-27.1365	0/1:163:72,91:72:2508:91:3260:-191.766,0,-170.283	1/1:149:0,149:0:0:149:5309:-410.011,-44.8535,0	1/1:72:0,72:0:0:72:2567:-191.151,-21.6742,0	0/1:8:1,7:1:36:7:248:-15.3186,0,-1.12788	1/1:77:0,77:0:0:77:2759:-214.749,-23.1793,0	1/1:56:0,56:0:0:56:1994:-151.238,-16.8577,0	1/1:145:0,145:0:0:145:5178:-397.912,-43.6494,0	1/1:43:0,43:0:0:43:1527:-124.362,-12.9443,0	0/1:36:15,21:15:532:21:756:-48.7391,0,-36.7682	0/1:105:53,52:53:1853:52:1859:-102.772,0,-132.182	1/1:107:0,107:0:0:107:3805:-281.417,-32.2102,0	1/1:136:0,136:0:0:136:4850:-392.38,-40.9401,0	1/1:85:0,85:0:0:85:2983:-240.417,-25.5876,0	0/1:140:61,79:61:2139:79:2836:-187.489,0,-149.336	0/1:138:71,67:71:2513:67:2387:-134.561,0,-180.829	1/1:28:0,28:0:0:28:993:-80.639,-8.42884,0	0/1:104:41,63:41:1412:63:2228:-135.061,0,-92.4048	0/1:99:42,57:42:1492:57:2014:-119.946,0,-102	0/1:14:4,10:4:144:10:360:-21.9192,0,-8.35552	0/1:121:40,81:40:1424:81:2889:-187.269,0,-90.2758	1/1:22:0,22:0:0:22:788:-62.6474,-6.62266,0	0/1:36:9,27:9:315:27:945:-59.7902,0,-17.1509	1/1:17:0,17:0:0:17:608:-45.5058,-5.11751,0	1/1:109:0,109:0:0:109:3874:-300.557,-32.8123,0	0/1:115:59,56:59:2063:56:1995:-125.686,0,-147.259	1/1:11:0,11:0:0:11:387:-31.9071,-3.31133,0	1/1:142:0,142:0:0:142:5083:-371.392,-42.7463,0	1/1:163:1,162:1:36:162:5768:-461.878,-45.4945,0	1/1:71:4,67:4:140:67:2396:-173.736,-9.57743,0	0/1:75:31,44:31:1108:44:1580:-104.559,0,-75.5614	0/1:101:55,46:55:1934:46:1619:-99.218,0,-142.378	1/1:244:0,244:0:0:244:8667:-699.148,-73.4513,0	1/1:51:0,51:0:0:51:1819:-142.506,-15.3525,0	0/1:44:25,19:25:862:19:668:-37.5366,0,-62.634	0/1:35:15,20:15:505:20:716:-42.2375,0,-34.127	0/1:26:14,12:14:496:12:419:-26.4883,0,-35.9415	1/1:169:0,169:0:0:169:5981:-446.719,-50.8741,0	1/1:73:0,73:0:0:73:2588:-191.981,-21.9752,0	0/1:184:85,99:85:3009:99:3539:-216.764,0,-212.097	1/1:117:0,117:0:0:117:4171:-335.715,-35.2205,0	1/1:193:0,193:0:0:193:6867:-507.278,-58.0988,0	0/1:88:41,47:41:1419:47:1684:-95.3216,0,-99.44	0/1:48:16,32:16:557:32:1140:-70.1679,0,-35.1305	1/1:56:0,56:0:0:56:1995:-153.053,-16.8577,0	0/1:61:26,35:26:915:35:1244:-73.9273,0,-62.8247	1/1:143:0,143:0:0:143:5112:-412.477,-43.0473,0	1/1:44:0,44:0:0:44:1541:-123.238,-13.2453,0	0/1:68:31,37:31:1086:37:1320:-86.9333,0,-76.9753	1/1:39:0,39:0:0:39:1387:-111.908,-11.7402,0	1/1:113:1,112:1:36:112:4005:-318.872,-30.4272,0	0/1:21:7,14:7:229:14:500:-31.4119,0,-14.3314	1/1:61:0,61:0:0:61:2175:-160.593,-18.3628,0	0/1:64:31,33:31:1100:33:1180:-68.5086,0,-77.2575	0/1:76:37,39:37:1298:39:1387:-85.5245,0,-92.314	0/1:162:75,87:75:2628:87:3077:-189.099,0,-184.465	0/1:32:22,10:22:780:10:356:-18.65,0,-58.6927	1/1:121:0,121:0:0:121:4313:-348.001,-36.4246,0	1/1:75:0,75:0:0:75:2645:-213.151,-22.5773,0
chr12	23405361	.	TG	CA,CG	114302	PASS	AB=0.508387,0.489617;ABP=4.54004,5.35521;AC=143,45;AF=0.760638,0.239362;AN=188;AO=4109,1238;CIGAR=2X,1X1M;DP=5356;DPB=5356;DPRA=57.5806,1.34429;EPP=8925.59,2691.29;EPPR=5.18177;GTI=2;LEN=2,1;MEANALT=1.6129,2.1;MQM=59.7435,59.9847;MQMR=60;NS=94;NUMALT=2;ODDS=0.0984241;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=145707,44139;QR=36;RO=1;RPL=4109,1238;RPP=8925.59,2691.29;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=4109,1238;SAP=8925.59,2691.29;SAR=0,0;SRF=1;SRP=5.18177;SRR=0;TYPE=mnp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26,0:0:0:26,0:910,0:-82.2091,-7.82678,0,-82.2091,-7.82678,-82.2091	1/2:49:0,22,27:0:0:22,27:787,972:-143.84,-79.6701,-73.0474,-64.5285,0,-56.4006	1/2:116:0,72,44:0:0:72,44:2550,1539:-333.277,-125.553,-103.879,-208.075,0,-194.83	1/1:174:0,172,2:0:0:172,2:6144,72:-552.694,-51.7772,0,-546.819,-45.5425,-546.217	1/2:21:0,7,14:0:0:7,14:250,500:-61.4996,-41.1218,-39.0145,-20.7348,0,-16.5204	1/2:6:0,3,3:0:0:3,3:108,108:-17.9843,-9.17208,-8.26899,-9.17208,0,-8.26899	1/1:26:0,26,0:0:0:26,0:919,0:-83.0256,-7.82678,0,-83.0256,-7.82678,-83.0256	1/2:60:0,29,31:0:0:29,31:1035,1108:-175.076,-90.6991,-81.9692,-84.7337,0,-75.4017	1/2:48:0,29,19:0:0:29,19:1012,680:-138.11,-55.8096,-47.0797,-82.6548,0,-76.9352	1/1:64:0,64,0:0:0:64,0:2256,0:-203.276,-19.2659,0,-203.276,-19.2659,-203.276	1/1:47:0,46,0:0:0:46,0:1625,0:-146.251,-13.8474,0,-146.251,-13.8474,-146.251	1/2:78:0,52,26:0:0:52,26:1832,932:-225.506,-76.3721,-60.7185,-149.49,0,-141.663	1/2:58:0,24,33:0:0:24,33:853,1180:-165.829,-96.3209,-89.0962,-69.6085,0,-59.6745	1/1:40:0,40,0:0:0:40,0:1421,0:-128.182,-12.0412,0,-128.182,-12.0412,-128.182	1/1:56:0,56,0:0:0:56,0:1981,0:-178.56,-16.8577,0,-178.56,-16.8577,-178.56	1/2:36:0,14,22:0:0:14,22:489,788:-104.386,-64.6221,-60.4077,-40.1163,0,-33.4936	1/1:26:0,26,0:0:0:26,0:907,0:-81.9361,-7.82678,0,-81.9361,-7.82678,-81.9361	1/1:13:0,13,0:0:0:13,0:466,0:-42.2753,-3.91339,0,-42.2753,-3.91339,-42.2753	1/1:30:0,30,0:0:0:30,0:1065,0:-96.1539,-9.0309,0,-96.1539,-9.0309,-96.1539	1/2:88:0,40,48:0:0:40,48:1434,1715:-257.142,-140.185,-128.144,-117.314,0,-102.865	1/2:95:0,36,59:0:0:36,59:1290,2111:-277.702,-172.498,-161.66,-105.562,0,-87.8013	1/1:58:0,58,0:0:0:58,0:2040,0:-183.866,-17.4597,0,-183.866,-17.4597,-183.866	1/1:70:0,69,0:0:0:69,0:2463,0:-221.577,-20.7711,0,-221.577,-20.7711,-221.577	1/1:49:0,47,2:0:0:47,2:1669,72:-150.136,-14.1484,0,-144.261,-7.91375,-143.659	1/2:31:0,18,13:0:0:18,13:611,460:-87.3614,-37.8214,-32.4029,-49.8876,0,-45.9742	1/2:174:0,89,84:0:0:89,84:3170,3003:-503.211,-244.855,-218.063,-258.354,0,-233.067	1/1:154:0,152,1:0:0:152,1:5418,36:-487.407,-45.7566,0,-484.47,-42.7642,-484.169	1/1:22:0,22,0:0:0:22,0:784,0:-70.8843,-6.62266,0,-70.8843,-6.62266,-70.8843	1/2:123:0,63,60:0:0:63,60:2233,2134:-356.159,-174.265,-155.3,-182.248,0,-164.187	1/2:79:0,31,48:0:0:31,48:1095,1711:-228.998,-139.826,-130.494,-89.527,0,-75.0775	1/2:58:0,40,18:0:0:40,18:1405,639:-166.767,-52.4197,-40.3785,-114.701,0,-109.282	1/2:5:0,4,1:0:0:4,1:135,36:-14.2081,-3.29724,-2.09312,-11.2661,0,-10.9651	1/1:8:0,8,0:0:0:8,0:288,0:-26.2674,-2.40824,0,-26.2674,-2.40824,-26.2674	1/1:1:0,1,0:0:0:1,0:34,0:-3.39891,-0.30103,0,-3.39891,-0.30103,-3.39891	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:146:0,71,75:0:0:71,75:2533,2681:-425.444,-218.956,-197.583,-206.845,0,-184.267	1/1:64:0,64,0:0:0:64,0:2259,0:-203.543,-19.2659,0,-203.543,-19.2659,-203.543	1/1:50:0,50,0:0:0:50,0:1785,0:-160.925,-15.0515,0,-160.925,-15.0515,-160.925	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:63:0,63,0:0:0:63,0:2229,0:-200.846,-18.9649,0,-200.846,-18.9649,-200.846	1/1:24:0,24,0:0:0:24,0:851,0:-76.8967,-7.22472,0,-76.8967,-7.22472,-76.8967	1/1:88:0,88,0:0:0:88,0:3120,0:-281.026,-26.4906,0,-281.026,-26.4906,-281.026	1/1:38:0,38,0:0:0:38,0:1355,0:-122.24,-11.4391,0,-122.24,-11.4391,-122.24	1/2:40:0,16,24:0:0:16,24:558,837:-113.774,-68.3925,-63.576,-45.7303,0,-38.5056	1/2:46:0,30,16:0:0:30,16:1056,561:-131.966,-46.0011,-36.9702,-86.3154,0,-81.499	1/1:37:0,37,0:0:0:37,0:1307,0:-117.907,-11.1381,0,-117.907,-11.1381,-117.907	1/1:116:0,116,0:0:0:116,0:4152,0:-373.786,-34.9195,0,-373.786,-34.9195,-373.786	1/1:72:0,72,0:0:0:72,0:2561,0:-230.726,-21.6742,0,-230.726,-21.6742,-230.726	1/2:82:0,50,31:0:0:50,31:1766,1112:-234.521,-90.7383,-75.6868,-143.818,0,-134.486	1/2:90:0,51,39:0:0:51,39:1780,1395:-258.867,-114.108,-98.7556,-145.113,0,-133.373	1/1:5:0,5,0:0:0:5,0:180,0:-16.5473,-1.50515,0,-16.5473,-1.50515,-16.5473	1/2:85:0,49,36:0:0:49,36:1726,1281:-245.268,-104.754,-90.0037,-140.868,0,-130.031	1/2:21:0,11,10:0:0:11,10:394,360:-61.8652,-29.734,-26.4227,-32.4902,0,-29.4799	1/2:5:0,1,4:0:0:1,4:29,144:-14.4042,-12.1095,-11.8085,-2.59863,0,-1.39451	1/2:88:0,35,53:0:0:35,53:1227,1868:-252.287,-152.443,-141.907,-100.196,0,-84.2411	1/1:20:0,20,0:0:0:20,0:697,0:-63.0483,-6.0206,0,-63.0483,-6.0206,-63.0483	1/1:6:0,6,0:0:0:6,0:205,0:-18.7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chr12	23405374	.	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chr12	23418160	.	CATAA	CATAG,AATAG	253052	PASS	AB=0.479836,0.516576;ABP=23.6771,16.9757;AC=141,43;AF=0.766304,0.233696;AN=184;AO=8745,3043;CIGAR=4M1X,1X3M1X;DP=11833;DPB=11832.8;DPRA=0,1.06818;EPP=18975.2,6610.8;EPPR=3.0103;GTI=2;LEN=1,5;MEANALT=1.97826,2.5;MQM=59.9862,59.9878;MQMR=60;NS=92;NUMALT=2;ODDS=0.569541;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=312683,107410;QR=67;RO=2;RPL=8743,3043;RPP=18975.2,6610.8;RPPR=7.35324;RPR=2,0;RUN=1,1;SAF=0,0;SAP=18992.5,6610.8;SAR=8745,3043;SRF=1;SRP=3.0103;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:46:0,46,0:0:0:46,0:1652,0:-148.968,-13.8474,0,-148.968,-13.8474,-148.968	1/2:287:0,138,149:0:0:138,149:4901,5256:-827.681,-428.332,-386.79,-399.702,0,-354.849	1/2:158:0,64,94:0:0:64,94:2284,3321:-457.015,-270.815,-251.549,-186.556,0,-158.259	1/1:262:0,262,0:0:0:262,0:9384,0:-844.522,-78.8699,0,-844.522,-78.8699,-844.522	1/2:154:0,87,65:0:0:87,65:3124,2313:-443.452,-188.611,-162.422,-254.944,0,-235.377	1/2:82:0,39,43:0:0:39,43:1396,1498:-236.013,-122.167,-110.427,-114.199,0,-101.255	1/1:162:0,162,0:0:0:162,0:5784,0:-520.674,-48.7669,0,-520.674,-48.7669,-520.674	1/2:247:0,109,138:0:0:109,138:3900,4863:-714.316,-396.289,-363.477,-318.382,0,-276.84	1/2:127:0,61,66:0:0:61,66:2169,2324:-366.311,-189.552,-171.19,-177.112,0,-157.244	1/1:75:0,70,4:0:0:70,4:2506,134:-225.46,-21.0721,0,-214.61,-10.2004,-213.406	1/1:53:0,53,0:0:0:53,0:1904,0:-171.638,-15.9546,0,-171.638,-15.9546,-171.638	1/2:69:0,33,34:0:0:33,34:1188,1192:-193.967,-97.0271,-87.0931,-96.9724,0,-86.7374	1/2:69:0,35,34:0:0:35,34:1241,1187:-198.003,-96.8984,-86.3623,-101.456,0,-91.2214	1/1:60:0,60,0:0:0:60,0:2152,0:-193.947,-18.0618,0,-193.947,-18.0618,-193.947	1/1:62:0,62,0:0:0:62,0:2198,0:-198.085,-18.6639,0,-198.085,-18.6639,-198.085	1/2:36:0,17,19:0:0:17,19:599,669:-103.515,-54.8163,-49.6988,-49.0506,0,-43.331	1/1:66:0,66,0:0:0:66,0:2356,0:-212.299,-19.868,0,-212.299,-19.868,-212.299	1/1:60:0,59,0:0:0:59,0:2124,0:-191.186,-17.7608,0,-191.186,-17.7608,-191.186	1/1:26:0,26,0:0:0:26,0:936,0:-84.5595,-7.82678,0,-84.5595,-7.82678,-84.5595	1/2:301:0,157,143:0:0:157,143:5640,5072:-873.323,-413.223,-365.961,-460.097,0,-417.049	1/2:169:0,88,79:0:0:88,79:3148,2793:-484.171,-227.472,-200.981,-256.695,0,-232.914	1/1:110:0,109,0:0:0:109,0:3904,0:-351.189,-32.8123,0,-351.189,-32.8123,-351.189	1/1:114:0,113,1:0:0:113,1:4037,35:-363.167,-34.0164,0,-360.319,-30.8188,-360.018	1/1:119:0,109,10:0:0:109,10:3916,357:-352.275,-32.8123,0,-323.17,-3.3503,-320.159	1/2:121:0,50,70:0:0:50,70:1784,2481:-347.539,-202.104,-187.052,-145.431,0,-124.359	1/2:472:0,192,279:0:0:192,279:6829,9820:-1355.97,-799.436,-741.638,-556.547,0,-472.56	1/1:289:0,289,0:0:0:289,0:10344,0:-930.883,-86.9977,0,-930.883,-86.9977,-930.883	1/1:48:0,47,0:0:0:47,0:1684,0:-151.595,-14.1484,0,-151.595,-14.1484,-151.595	1/2:399:0,179,218:0:0:179,218:6398,7704:-1149.11,-627.444,-573.559,-521.682,0,-456.057	1/2:229:0,100,129:0:0:100,129:3596,4573:-666.291,-372.906,-342.803,-293.742,0,-254.909	1/2:187:0,88,99:0:0:88,99:3144,3501:-541.843,-285.503,-259.012,-256.695,0,-226.893	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:184:0,94,88:0:0:94,88:3376,3127:-530.223,-254.823,-226.526,-275.412,0,-248.921	1/1:198:0,198,0:0:0:198,0:7069,0:-636.271,-59.6039,0,-636.271,-59.6039,-636.271	1/1:34:0,34,0:0:0:34,0:1224,0:-110.467,-10.235,0,-110.467,-10.235,-110.467	.:.:.:.:.:.:.:.	1/1:231:0,227,0:0:0:227,0:8091,0:-727.881,-68.3338,0,-727.881,-68.3338,-727.881	1/1:16:0,16,0:0:0:16,0:561,0:-50.8171,-4.81648,0,-50.8171,-4.81648,-50.8171	1/1:237:0,236,0:0:0:236,0:8423,0:-757.786,-71.0431,0,-757.786,-71.0431,-757.786	1/1:78:0,78,0:0:0:78,0:2792,0:-251.52,-23.4803,0,-251.52,-23.4803,-251.52	1/2:57:0,26,30:0:0:26,30:932,1070:-163.286,-87.2703,-79.4435,-76.0604,0,-67.0295	1/2:94:0,53,41:0:0:53,41:1896,1431:-271.247,-116.742,-100.788,-154.857,0,-142.515	1/1:259:1,258,0:1:31:258,0:9212,0:-825.95,-74.8673,0,-826.251,-77.6657,-828.739	1/1:323:0,322,0:0:0:322,0:11495,0:-1034.07,-96.9317,0,-1034.07,-96.9317,-1034.07	1/1:126:0,126,0:0:0:126,0:4504,0:-405.529,-37.9298,0,-405.529,-37.9298,-405.529	1/2:238:0,140,98:0:0:140,98:4982,3446:-686.885,-280.855,-238.711,-406.384,0,-376.883	1/2:144:0,74,70:0:0:74,70:2660,2471:-418.586,-201.573,-179.296,-217.369,0,-196.297	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:200:0,89,111:0:0:89,111:3196,3944:-582.454,-321.74,-294.949,-261.071,0,-227.657	1/2:54:0,21,33:0:0:21,33:748,1174:-157.001,-96.0336,-89.7119,-61.3237,0,-51.3897	1/2:20:0,7,12:0:0:7,12:240,414:-53.1875,-33.7015,-31.5943,-19.5484,0,-15.936	1/2:203:0,99,102:0:0:99,102:3540,3588:-580.794,-292.141,-262.339,-288.721,0,-258.016	1/1:90:0,88,0:0:0:88,0:3122,0:-280.845,-26.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chr12	23422099	.	A	T	111294	PASS	AB=0.543784;ABP=57.3942;AC=141;AF=0.75;AN=188;AO=5268;CIGAR=1X;DP=6770;DPB=6770;DPRA=36.3871;EPP=11442.3;EPPR=3262.39;GTI=2;LEN=1;MEANALT=1.01075;MQM=59.9692;MQMR=59.984;NS=94;NUMALT=1;ODDS=0.351938;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=188230;QR=53581;RO=1501;RPL=0;RPP=11442.3;RPPR=3262.39;RPR=5268;RUN=1;SAF=5268;SAP=11442.3;SAR=0;SRF=1501;SRP=3262.39;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:636:-57.568,-5.41854,0	0/1:59:35,24:35:1225:24:848:-58.8789,0,-92.7909	0/1:158:43,115:43:1540:115:4050:-317.124,0,-91.3303	1/1:175:0,175:0:0:175:6269:-564.3,-52.6803,0	0/1:26:13,13:13:464:13:464:-34.2707,0,-34.2707	0/1:24:12,12:12:432:12:432:-31.9965,0,-31.9965	1/1:65:0,65:0:0:65:2334:-210.319,-19.567,0	0/1:79:39,40:39:1396:40:1432:-105.396,0,-102.158	0/1:57:30,27:30:1076:27:951:-68.7459,0,-79.9941	1/1:117:0,117:0:0:117:4165:-374.962,-35.2205,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:94:54,40:54:1936:40:1429:-100.61,0,-146.22	0/1:58:27,31:27:949:31:1112:-82.9316,0,-68.263	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	1/1:65:0,65:0:0:65:2340:-210.859,-19.567,0	0/1:58:23,35:23:828:35:1248:-95.1651,0,-57.3844	1/1:22:0,22:0:0:22:787:-71.1545,-6.62266,0	1/1:25:0,25:0:0:25:896:-80.9604,-7.52575,0	1/1:24:0,24:0:0:24:851:-76.9095,-7.22472,0	0/1:167:55,112:55:1927:112:4016:-311.356,0,-123.429	0/1:120:57,63:57:2013:63:2218:-163.758,0,-145.318	1/1:93:0,93:0:0:93:3320:-299.019,-27.9958,0	1/1:90:0,90:0:0:90:3220:-290.023,-27.0927,0	1/1:48:3,45:3:108:45:1616:-135.655,-4.37427,0	0/1:66:29,37:29:1036:37:1320:-99.234,0,-73.6859	0/1:186:94,92:94:3364:92:3292:-240.508,0,-246.985	1/1:197:0,197:0:0:197:7014:-631.195,-59.3029,0	1/1:33:0,33:0:0:33:1172:-105.787,-9.93399,0	0/1:178:80,98:80:2868:98:3500:-261.628,0,-204.774	0/1:71:26,45:26:921:45:1616:-124.357,0,-61.8321	0/1:72:42,30:42:1504:30:1080:-75.8391,0,-113.98	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.2064	1/1:23:0,23:0:0:23:820:-74.1225,-6.92369,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	0/1:14:4,10:4:140:10:360:-28.5299,0,-8.73016	0/1:171:78,93:78:2800:93:3328:-248.262,0,-200.633	1/1:114:0,114:0:0:114:4088:-368.036,-34.3174,0	1/1:54:0,54:0:0:54:1940:-174.876,-16.2556,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:78:0,78:0:0:78:2800:-252.24,-23.4803,0	1/1:32:0,32:0:0:32:1144:-103.27,-9.63296,0	1/1:146:0,146:0:0:146:5193:-467.512,-43.9504,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	0/1:42:25,17:25:900:17:612:-42.7702,0,-68.6778	0/1:64:27,37:27:972:37:1320:-99.836,0,-68.532	1/1:76:0,76:0:0:76:2724:-245.403,-22.8783,0	1/1:107:0,107:0:0:107:3821:-343.596,-32.2102,0	1/1:66:0,66:0:0:66:2368:-213.378,-19.868,0	0/1:95:32,63:32:1148:63:2256:-174.649,0,-75.032	0/1:96:59,37:59:2100:37:1328:-90.9234,0,-160.371	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:122:61,61:61:2192:61:2192:-160.82,0,-160.82	0/1:73:27,46:27:972:46:1648:-126.633,0,-65.8227	0/1:9:3,6:3:108:6:208:-16.3498,0,-7.3659	0/1:118:45,73:45:1601:73:2612:-199.788,0,-108.857	1/1:32:2,30:2:72:30:1065:-89.323,-2.79624,0	0/1:8:2,6:2:72:6:201:-16.0088,0,-4.42848	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	0/1:74:46,28:46:1652:28:991:-67.2273,0,-126.692	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:127:0,127:0:0:127:4489:-404.179,-38.2308,0	1/1:97:0,97:0:0:97:3476:-313.051,-29.1999,0	1/1:40:1,39:1:36:39:1392:-121.981,-8.44293,0	0/1:86:42,44:42:1512:44:1559:-114.626,0,-110.486	0/1:122:41,81:41:1461:81:2908:-225.229,0,-95.0584	1/1:137:0,137:0:0:137:4888:-440.065,-41.2411,0	1/1:39:1,38:1:36:38:1368:-119.823,-8.1419,0	0/1:69:33,36:33:1180:36:1280:-94.7322,0,-85.737	0/1:41:16,25:16:572:25:896:-68.6181,0,-39.4712	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	1/1:132:0,132:0:0:132:4713:-424.329,-39.736,0	1/1:63:0,63:0:0:63:2245:-202.312,-18.9649,0	0/1:101:51,50:51:1794:50:1760:-128.27,0,-131.334	1/1:138:0,138:0:0:138:4952:-445.828,-41.5421,0	1/1:36:0,36:0:0:36:1284:-115.863,-10.8371,0	0/1:53:20,33:20:705:33:1180:-90.5535,0,-47.8182	0/1:9:1,8:1:36:8:288:-23.5581,0,-0.889005	1/1:98:0,97:0:0:97:3484:-313.41,-29.1999,0	0/1:81:40,41:40:1421:41:1476:-108.753,0,-103.802	1/1:172:0,172:0:0:172:6162:-554.678,-51.7772,0	1/1:45:0,45:0:0:45:1607:-144.919,-13.5464,0	0/1:63:34,29:34:1220:29:1036:-74.589,0,-91.1419	1/1:60:0,60:0:0:60:2152:-193.947,-18.0618,0	1/1:129:2,127:2:72:127:4564:-404.087,-31.9961,0	0/1:25:15,10:15:536:10:352:-24.4924,0,-41.0491	1/1:57:0,57:0:0:57:2018:-181.89,-17.1587,0	0/1:75:33,42:33:1180:42:1508:-113.437,0,-83.9308	0/1:33:15,18:15:536:18:648:-48.7179,0,-38.6408	0/1:78:36,42:36:1284:42:1508:-112.534,0,-92.3831	0/1:49:32,17:32:1148:17:612:-40.663,0,-88.8794	1/1:118:0,118:0:0:118:4198:-378.004,-35.5215,0	1/1:96:0,96:0:0:96:3444:-310.172,-28.8989,0
chr12	23422213	.	TCCG	CCCG,CCCA	163016	PASS	AB=0.507563,0.487395;ABP=4.78397,7.93717;AC=142,46;AF=0.755319,0.244681;AN=188;AO=5777,1764;CIGAR=1X3M,1X2M1X;DP=7580;DPB=7580;DPRA=11.6329,1.08541;EPP=12322.8,3781.55;EPPR=7.35324;GTI=1;LEN=1,4;MEANALT=1.93548,2.34615;MQM=59.9882,59.9172;MQMR=60;NS=94;NUMALT=2;ODDS=1.23656;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=206040,61712;QR=69;RO=2;RPL=27,8;RPP=12314.2,3764.32;RPPR=7.35324;RPR=5750,1756;RUN=1,1;SAF=1,2;SAP=12538.9,3816.14;SAR=5776,1762;SRF=0;SRP=7.35324;SRR=2;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:1,13,0:1:36:13,0:464,0:-38.4992,-0.616145,0,-38.8003,-3.91339,-41.7379	1/2:112:0,64,47:0:0:64,47:2292,1596:-316.34,-129.412,-110.147,-186.916,0,-172.767	1/2:86:0,39,46:0:0:39,46:1392,1616:-245.113,-131.628,-119.887,-113.586,0,-99.7388	1/1:162:0,161,1:0:0:161,1:5750,30:-517.316,-48.4658,0,-514.918,-45.7673,-514.617	1/2:22:0,16,6:0:0:16,6:561,216:-63.6277,-17.9843,-13.1679,-46.0006,0,-44.1945	1/2:11:0,6,5:0:0:6,5:216,179:-32.5808,-14.9552,-13.1491,-17.9843,0,-16.4792	1/1:98:0,96,1:0:0:96,1:3407,30:-306.514,-28.8989,0,-304.116,-26.5302,-303.815	1/2:140:0,60,80:0:0:60,80:2156,2804:-404.408,-228.518,-210.456,-176.245,0,-152.163	1/2:51:0,24,27:0:0:24,27:855,926:-145.212,-75.5164,-68.2917,-70.0451,0,-61.9172	1/1:114:0,113,0:0:0:113,0:4052,0:-364.636,-34.0164,0,-364.636,-34.0164,-364.636	1/1:33:0,33,0:0:0:33,0:1157,0:-104.434,-9.93399,0,-104.434,-9.93399,-104.434	1/2:77:0,38,38:0:0:38,38:1364,1318:-218.447,-107.178,-95.7387,-111.32,0,-99.881	1/2:60:0,29,31:0:0:29,31:1018,1103:-173.086,-90.2401,-81.5103,-83.1989,0,-73.867	1/1:78:0,77,0:0:0:77,0:2760,0:-248.361,-23.1793,0,-248.361,-23.1793,-248.361	1/1:61:0,59,0:0:0:59,0:2093,0:-188.317,-17.7608,0,-188.317,-17.7608,-188.317	1/2:61:0,34,27:0:0:34,27:1205,956:-176.392,-78.2268,-67.9918,-98.5189,0,-90.3911	1/1:72:0,72,0:0:0:72,0:2540,0:-228.85,-21.6742,0,-228.85,-21.6742,-228.85	1/1:54:0,54,0:0:0:54,0:1940,0:-174.876,-16.2556,0,-174.876,-16.2556,-174.876	1/1:39:0,39,0:0:0:39,0:1392,0:-125.579,-11.7402,0,-125.579,-11.7402,-125.579	1/2:102:0,62,39:0:0:62,39:2220,1348:-290.606,-109.556,-90.8917,-181.08,0,-169.34	1/2:126:0,73,52:0:0:73,52:2603,1821:-360.28,-148.119,-126.144,-212.154,0,-196.5	1/1:37:0,37,0:0:0:37,0:1313,0:-118.47,-11.1381,0,-118.47,-11.1381,-118.47	1/1:118:0,117,0:0:0:117,0:4196,0:-377.461,-35.2205,0,-377.461,-35.2205,-377.461	1/1:85:0,78,7:0:0:78,7:2781,250:-250.173,-23.4803,0,-229.79,-2.74087,-227.683	1/2:45:0,27,18:0:0:27,18:968,623:-129.932,-50.9735,-42.8457,-79.3096,0,-73.891	1/2:266:0,143,122:0:0:143,122:5085,4268:-761.454,-347.057,-304.01,-414.389,0,-377.663	1/1:146:0,146,0:0:0:146,0:5228,0:-470.658,-43.9504,0,-470.658,-43.9504,-470.658	1/1:47:0,47,0:0:0:47,0:1670,0:-150.586,-14.1484,0,-150.586,-14.1484,-150.586	1/2:177:0,96,81:0:0:96,81:3427,2819:-508.953,-229.56,-200.661,-279.745,0,-255.361	1/2:157:0,81,74:0:0:81,74:2884,2609:-447.493,-212.436,-188.053,-235.066,0,-212.79	1/2:128:0,79,48:0:0:79,48:2827,1685:-367.659,-137.125,-113.344,-230.527,0,-216.078	1/2:4:0,2,2:0:0:2,2:68,72:-11.7405,-6.23466,-5.6326,-5.85565,0,-5.25359	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	2/2:7:0,0,7:0:0:0,7:0,239:-21.8428,-21.8428,-21.8428,-2.10721,-2.10721,0	1/2:199:0,103,96:0:0:103,96:3673,3378:-574.751,-275.338,-244.332,-299.767,0,-270.868	1/1:253:0,252,0:0:0:252,0:8994,0:-809.101,-75.8596,0,-809.101,-75.8596,-809.101	1/1:65:0,65,0:0:0:65,0:2311,0:-208.25,-19.567,0,-208.25,-19.567,-208.25	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:104:0,104,0:0:0:104,0:3701,0:-333.29,-31.3071,0,-333.29,-31.3071,-333.29	1/1:25:0,25,0:0:0:25,0:900,0:-81.321,-7.52575,0,-81.321,-7.52575,-81.321	1/1:87:0,86,0:0:0:86,0:3096,0:-278.655,-25.8886,0,-278.655,-25.8886,-278.655	1/1:82:0,82,0:0:0:82,0:2909,0:-262.045,-24.6845,0,-262.045,-24.6845,-262.045	1/2:64:0,22,41:0:0:22,41:788,1448:-182.198,-117.932,-111.309,-64.2815,0,-51.9392	1/2:84:0,38,46:0:0:38,46:1364,1607:-242.338,-131.07,-119.631,-111.622,0,-97.7742	1/1:120:0,120,0:0:0:120,0:4284,0:-385.736,-36.1236,0,-385.736,-36.1236,-385.736	1/1:180:0,178,0:0:0:178,0:6316,0:-568.088,-53.5833,0,-568.088,-53.5833,-568.088	1/1:61:0,61,0:0:0:61,0:2184,0:-196.826,-18.3628,0,-196.826,-18.3628,-196.826	1/2:106:0,60,46:0:0:60,46:2160,1614:-307.95,-131.7,-113.638,-176.605,0,-162.757	1/2:132:0,61,71:0:0:61,71:2181,2504:-382.076,-204.24,-185.877,-178.191,0,-156.818	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:99:0,51,48:0:0:51,48:1828,1681:-286.218,-137.124,-121.771,-149.448,0,-134.999	1/2:35:0,13,21:0:0:13,21:468,729:-97.4379,-59.2478,-55.3344,-38.1855,0,-31.8639	1/2:7:0,3,4:0:0:3,4:108,137:-20.283,-11.4633,-10.5602,-9.17208,0,-7.96796	1/2:94:0,44,49:0:0:44,49:1567,1716:-267.327,-139.605,-126.36,-127.716,0,-112.965	1/1:49:0,48,0:0:0:48,0:1706,0:-153.465,-14.4494,0,-153.465,-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chr12	23422228	.	G	A	123671	PASS	AB=0.514544;ABP=9.51613;AC=142;AF=0.755319;AN=188;AO=5824;CIGAR=1X;DP=7565;DPB=7565;DPRA=11.6098;EPP=12597.6;EPPR=3766.18;GTI=1;LEN=1;MEANALT=1.04301;MQM=59.9821;MQMR=59.9206;NS=94;NUMALT=1;ODDS=0.379702;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=208155;QR=61880;RO=1737;RPL=5820;RPP=12614.9;RPPR=3774.86;RPR=4;RUN=1;SAF=2;SAP=12632.3;SAR=5822;SRF=1;SRP=3766.18;SRR=1736;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:492:-44.6123,-4.21442,0	0/1:111:46,65:46:1644:65:2324:-176.006,0,-114.823	0/1:86:45,41:45:1590:41:1472:-106.887,0,-117.5	1/1:160:1,158:1:36:158:5629:-503.17,-44.5854,0	0/1:23:7,16:7:252:16:576:-45.2513,0,-16.1053	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	1/1:101:0,101:0:0:101:3612:-325.286,-30.404,0	0/1:137:78,59:78:2774:59:2105:-148.476,0,-208.66	0/1:48:25,23:25:880:23:824:-60.0339,0,-65.065	1/1:111:0,111:0:0:111:3960:-356.588,-33.4143,0	1/1:33:0,33:0:0:33:1169:-105.515,-9.93399,0	0/1:76:39,37:39:1387:37:1324:-96.5838,0,-102.25	0/1:61:31,30:31:1103:30:1076:-78.79,0,-81.2088	1/1:79:0,79:0:0:79:2828:-254.759,-23.7814,0	1/1:64:0,64:0:0:64:2300:-207.261,-19.2659,0	0/1:62:27,35:27:972:35:1256:-94.6814,0,-69.134	1/1:71:0,71:0:0:71:2525:-227.502,-21.3731,0	1/1:54:0,54:0:0:54:1928:-173.797,-16.2556,0	1/1:39:0,39:0:0:39:1404:-126.659,-11.7402,0	0/1:100:38,62:38:1351:62:2224:-170.321,0,-91.7866	0/1:129:52,77:52:1852:77:2747:-208.635,0,-128.127	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:120:0,120:0:0:120:4285:-385.827,-36.1236,0	1/1:81:6,75:6:212:75:2669:-221.03,-4.95863,0	0/1:43:17,26:17:591:26:924:-70.5334,0,-40.571	0/1:262:117,145:117:4179:145:5200:-389.268,0,-297.335	1/1:146:0,146:0:0:146:5235:-471.286,-43.9504,0	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	0/1:176:80,96:80:2860:96:3443:-257.1,0,-204.648	0/1:157:72,84:72:2545:84:2998:-222.73,0,-181.979	0/1:127:48,78:48:1712:78:2792:-213.231,0,-116.076	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:193:93,100:93:3299:100:3567:-263.139,0,-239.032	1/1:249:0,249:0:0:249:8891:-800.177,-74.9565,0	1/1:64:1,63:1:36:63:2254:-199.524,-15.6676,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:108:0,108:0:0:108:3852:-346.875,-32.5112,0	1/1:26:0,26:0:0:26:922:-83.2964,-7.82678,0	1/1:89:0,89:0:0:89:3196:-287.863,-26.7917,0	1/1:84:0,84:0:0:84:2986:-268.971,-25.2865,0	0/1:63:41,22:41:1460:22:788:-52.2799,0,-112.731	0/1:85:46,39:46:1623:39:1387:-99.5406,0,-120.77	1/1:117:0,117:0:0:117:4172:-375.662,-35.2205,0	1/1:182:0,182:0:0:182:6517:-585.973,-54.7875,0	1/1:62:0,62:0:0:62:2213:-199.433,-18.6639,0	0/1:105:47,58:47:1680:58:2048:-152.981,0,-119.879	0/1:132:69,63:69:2476:63:2237:-161.856,0,-183.357	1/1:11:0,11:0:0:11:396:-35.9827,-3.31133,0	0/1:97:46,51:46:1648:51:1836:-136.321,0,-119.409	0/1:34:21,13:21:748:13:468:-32.2237,0,-57.4103	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:92:47,45:47:1688:45:1586:-115.332,0,-124.489	1/1:48:0,48:0:0:48:1720:-155.086,-14.4494,0	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:57:0,57:0:0:57:2048:-184.592,-17.1587,0	0/1:114:63,51:63:2252:51:1832:-130.843,0,-168.603	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:205:0,205:0:0:205:7319:-658.762,-61.7112,0	1/1:133:0,133:0:0:133:4758:-428.378,-40.037,0	1/1:89:4,85:4:144:85:3021:-258.807,-13.4781,0	0/1:53:29,24:29:1036:24:852:-61.0458,0,-77.5993	0/1:118:52,66:52:1856:66:2330:-174.436,0,-131.798	1/1:109:0,109:0:0:109:3879:-349.306,-32.8123,0	1/1:42:0,42:0:0:42:1500:-135.294,-12.6433,0	0/1:78:31,47:31:1104:47:1680:-128.007,0,-76.1903	0/1:93:51,42:51:1824:42:1504:-107.659,0,-136.437	0/1:23:14,9:14:491:9:324:-22.5822,0,-37.5605	1/1:97:0,97:0:0:97:3468:-312.33,-29.1999,0	1/1:63:0,63:0:0:63:2264:-204.022,-18.9649,0	0/1:134:70,64:70:2490:64:2300:-166.923,0,-184.014	1/1:124:0,124:0:0:124:4427:-398.602,-37.3277,0	1/1:49:0,49:0:0:49:1751:-157.873,-14.7505,0	0/1:85:39,46:39:1395:46:1646:-122.841,0,-100.253	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:82:0,82:0:0:82:2924:-263.396,-24.6845,0	0/1:74:29,44:29:1032:44:1564:-118.717,0,-70.8586	1/1:159:0,159:0:0:159:5691:-512.308,-47.8638,0	1/1:100:0,100:0:0:100:3579:-322.317,-30.103,0	0/1:51:26,25:26:915:25:896:-65.6078,0,-67.313	1/1:77:0,77:0:0:77:2757:-248.371,-23.1793,0	1/1:165:2,163:2:72:163:5836:-518.516,-42.8332,0	0/1:41:22,19:22:788:19:680:-49.1869,0,-58.9026	1/1:65:0,65:0:0:65:2336:-210.499,-19.567,0	0/1:68:39,29:39:1392:29:1040:-73.4443,0,-105.109	0/1:30:14,16:14:500:16:572:-42.7825,0,-36.3053	0/1:92:59,33:59:2108:33:1183:-79.0834,0,-162.294	0/1:48:30,18:30:1055:18:648:-44.2024,0,-80.8106	1/1:91:0,91:0:0:91:3245:-292.27,-27.3937,0	1/1:84:0,84:0:0:84:3016:-271.67,-25.2865,0
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chr12	23579372	.	A	G	13187.2	PASS	AB=0.474725;ABP=20.6827;AC=46;AF=0.244681;AN=188;AO=1519;CIGAR=1X;DP=6795;DPB=6795;DPRA=0.973344;EPP=3301.48;EPPR=11403.3;GTI=1;LEN=1;MEANALT=1.01887;MQM=28.3535;MQMR=30.89;NS=94;NUMALT=1;ODDS=0.868946;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=54236;QR=189261;RO=5274;RPL=0;RPP=3301.48;RPPR=11403.3;RPR=1519;RUN=1;SAF=1519;SAP=3301.48;SAR=0;SRF=5274;SRP=11455.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:59:58,1:58:2084:1:36:0,-15.2939,-134.601	0/1:66:30,36:30:1080:36:1283:-60.8752,0,-50.2462	0/1:67:29,38:29:1044:38:1364:-64.3848,0,-46.8691	0/0:115:115,0:115:4128:0:0:0,-34.6184,-311.108	0/1:54:38,16:38:1364:16:576:-30.3355,0,-95.5141	0/1:21:12,9:12:432:9:324:-14.2297,0,-21.4015	0/0:110:110,0:110:3952:0:0:0,-33.1133,-298.381	0/1:95:58,37:58:2053:37:1324:-53.7143,0,-105.993	0/1:81:48,33:48:1720:33:1188:-49.1961,0,-87.0874	0/0:72:72,0:72:2592:0:0:0,-21.6742,-194.55	0/1:45:23,22:23:828:22:788:-42.6807,0,-47.938	0/1:48:20,28:20:720:28:999:-48.1217,0,-32.0789	0/1:68:31,37:31:1116:37:1324:-62.4816,0,-51.9361	0/0:54:54,0:54:1944:0:0:0,-16.2556,-159.728	0/0:39:39,0:39:1404:0:0:0,-11.7402,-105.305	0/1:45:26,19:26:932:19:684:-40.8091,0,-62.3538	0/0:50:50,0:50:1800:0:0:0,-15.0515,-117.867	0/0:40:40,0:40:1436:0:0:0,-12.0412,-93.6264	0/0:26:26,0:26:932:0:0:0,-7.82678,-61.0188	0/1:112:59,53:59:2120:53:1884:-100.445,0,-126.639	0/1:94:58,36:58:2080:36:1277:-74.0256,0,-143.142	0/0:118:117,1:117:4184:1:36:0,-33.0546,-268.455	0/0:69:69,0:69:2464:0:0:0,-20.7711,-183.857	0/1:89:45,44:45:1608:44:1569:-98.8488,0,-105.849	0/1:57:44,13:44:1576:13:468:-20.4553,0,-113.371	0/1:238:114,124:114:4066:124:4420:-206.471,0,-190.297	0/0:117:117,0:117:4200:0:0:0,-35.2205,-346.489	0/0:30:30,0:30:1080:0:0:0,-9.0309,-89.4036	0/1:107:64,43:64:2300:43:1536:-64.2283,0,-118.526	0/1:77:40,37:40:1436:37:1320:-83.115,0,-95.9365	0/1:64:40,24:40:1440:24:856:-41.7755,0,-88.5022	0/1:7:2,5:2:72:5:176:-12.3719,0,-4.05511	0/0:26:26,0:26:936:0:0:0,-7.82678,-76.4065	0/0:7:7,0:7:252:0:0:0,-2.10721,-16.374	0/1:8:4,4:4:144:4:144:-7.04692,0,-7.05897	0/0:2:2,0:2:68:0:0:0,-0.60206,-4.80852	0/1:146:75,71:75:2696:71:2532:-116.751,0,-129.017	0/0:164:163,0:163:5856:0:0:0,-49.0679,-479.305	0/0:60:60,0:60:2152:0:0:0,-18.0618,-140.422	0/1:4:3,1:3:108:1:32:-1.78354,0,-8.03315	0/0:86:86,0:86:3092:0:0:0,-25.8886,-255.208	0/0:34:34,0:34:1224:0:0:0,-10.235,-99.5753	0/0:175:175,0:175:6281:0:0:0,-52.6802,-512.489	0/0:59:59,0:59:2116:0:0:0,-17.7608,-158.509	0/1:35:19,16:19:676:16:572:-30.5206,0,-41.1546	0/1:98:51,47:51:1828:47:1688:-76.5729,0,-89.6996	0/0:98:98,0:98:3512:0:0:0,-29.5009,-228.836	0/0:111:111,0:111:3988:0:0:0,-33.4143,-299.371	0/0:135:135,0:135:4841:0:0:0,-40.639,-361.435	0/1:50:26,23:26:936:23:811:-43.4394,0,-54.9535	0/1:153:79,74:79:2836:74:2627:-118.884,0,-136.709	0/0:5:5,0:5:180:0:0:0,-1.50515,-14.1189	0/1:96:59,37:59:2116:37:1328:-54.2977,0,-108.447	0/1:25:12,13:12:432:13:464:-21.4575,0,-20.1974	0/1:24:17,7:17:612:7:252:-8.88729,0,-33.1211	0/1:71:38,33:38:1364:33:1180:-71.7967,0,-90.6967	0/0:37:37,0:37:1328:0:0:0,-11.1381,-100.197	0/0:12:11,1:11:396:1:36:0,-1.14545,-23.5038	0/0:28:28,0:28:1008:0:0:0,-8.42884,-64.2208	0/0:68:68,0:68:2444:0:0:0,-20.47,-202.061	0/1:151:82,69:82:2952:69:2463:-133.536,0,-174.557	0/0:6:6,0:6:216:0:0:0,-1.80618,-16.3941	0/0:127:127,0:127:4532:0:0:0,-38.2308,-293.953	0/0:142:141,1:141:5060:1:32:0,-40.0225,-375.888	0/0:59:58,1:58:2076:1:36:0,-14.5731,-167.547	0/1:25:15,10:15:540:10:352:-17.9689,0,-33.0125	0/1:109:58,51:58:2088:51:1828:-97.37,0,-123.894	0/0:83:83,0:83:2971:0:0:0,-24.9855,-221.509	0/0:17:17,0:17:612:0:0:0,-5.11751,-50.8781	0/1:56:23,33:23:828:33:1160:-56.6312,0,-36.1974	0/1:72:34,38:34:1224:38:1360:-63.0082,0,-59.5813	0/1:28:16,12:16:572:12:432:-22.3209,0,-35.0255	0/0:152:152,0:152:5448:0:0:0,-45.7566,-351.698	0/0:88:88,0:88:3160:0:0:0,-26.4906,-205.057	0/1:145:80,65:80:2872:65:2317:-140.113,0,-192.416	0/0:62:62,0:62:2224:0:0:0,-18.6639,-165.193	0/0:82:82,0:82:2940:0:0:0,-24.6845,-189.269	0/1:46:22,24:22:792:24:864:-39.6845,0,-36.9048	0/1:19:3,16:3:108:16:572:-30.5449,0,-1.44481	0/0:63:63,0:63:2260:0:0:0,-18.9649,-184.589	0/1:42:24,18:24:860:18:631:-28.6041,0,-43.8389	0/0:214:214,0:214:7669:0:0:0,-64.4204,-571.96	0/0:85:85,0:85:3052:0:0:0,-25.5875,-228.956	0/1:54:20,34:20:716:34:1220:-70.5947,0,-38.1532	0/0:91:91,0:91:3268:0:0:0,-27.3937,-245.474	0/0:131:130,1:130:4672:1:36:0,-36.6138,-345.006	0/1:40:20,20:20:720:20:712:-32.5271,0,-34.2714	0/0:66:66,0:66:2372:0:0:0,-19.868,-153.072	0/1:58:32,26:32:1152:26:932:-41.596,0,-57.6394	0/1:52:19,33:19:684:33:1188:-77.1863,0,-40.4195	0/1:82:36,46:36:1296:46:1652:-107.012,0,-83.3267	0/1:61:24,37:24:860:37:1319:-77.057,0,-46.0535	0/0:56:56,0:56:2016:0:0:0,-16.8577,-150.802	0/0:80:79,1:79:2840:1:32:0,-21.3587,-212.25
chr12	23612116	.	T	C	208861	PASS	AB=0.528204;ABP=49.8015;AC=140;AF=0.744681;AN=188;AO=9958;CIGAR=1X;DP=13186;DPB=13186;DPRA=0;EPP=21626.5;EPPR=6988.64;GTI=1;LEN=1;MEANALT=1.10638;MQM=59.7709;MQMR=59.9378;NS=94;NUMALT=1;ODDS=3.5263;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=356040;QR=115230;RO=3217;RPL=0;RPP=21626.5;RPPR=6988.64;RPR=9958;RUN=1;SAF=9958;SAP=21626.5;SAR=0;SRF=3217;SRP=6988.64;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:81:0,81:0:0:81:2896:-260.24,-24.3834,0	0/1:295:127,168:127:4544:168:6024:-453.383,0,-320.323	0/1:168:66,102:66:2372:102:3636:-276.778,0,-163.165	1/1:225:3,222:3:108:222:7920:-702.698,-57.6566,0	0/1:78:42,36:42:1504:36:1288:-92.7162,0,-112.174	0/1:105:50,55:50:1792:55:1972:-146.024,0,-129.954	1/1:166:0,166:0:0:166:5932:-533.808,-49.971,0	0/1:301:148,153:148:5312:153:5486:-403.163,0,-385.392	0/1:177:79,98:79:2798:98:3488:-260.828,0,-198.67	1/1:316:0,315:0:0:315:11264:-1011.85,-94.8245,0	0/1:89:35,54:35:1256:54:1927:-146.914,0,-86.5536	0/1:101:52,49:52:1872:49:1752:-127.544,0,-138.341	0/1:83:39,44:39:1387:44:1572:-116.778,0,-100.143	1/1:122:0,122:0:0:122:4370:-393.455,-36.7257,0	1/1:77:0,77:0:0:77:2768:-249.356,-23.1793,0	0/1:67:34,33:34:1224:33:1180:-86.3298,0,-90.298	1/1:127:0,127:0:0:127:4517:-406.463,-38.2308,0	1/1:84:0,83:0:0:83:2976:-267.852,-24.9855,0	1/1:81:1,80:1:36:80:2860:-254.031,-20.7852,0	0/1:257:113,144:113:4048:144:5164:-387.482,0,-287.143	0/1:214:115,99:115:4128:99:3540:-254.38,0,-307.283	1/1:113:0,113:0:0:113:4019:-361.899,-34.0164,0	1/1:47:0,47:0:0:47:1672:-150.765,-14.1484,0	0/1:244:90,154:90:3220:154:5492:-420.931,0,-216.563	0/1:98:48,50:48:1720:50:1772:-130.253,0,-125.585	0/1:454:195,259:195:7008:259:9272:-697.773,0,-494.112	1/1:413:0,413:0:0:413:14775:-1329.46,-124.325,0	1/1:35:0,35:0:0:35:1256:-113.345,-10.5361,0	0/1:289:136,152:136:4880:152:5444:-403.027,0,-352.295	0/1:212:103,109:103:3692:109:3920:-289.15,0,-268.664	0/1:155:85,70:85:3036:70:2508:-179.306,0,-226.811	0/1:26:13,13:13:453:13:464:-34.2661,0,-33.268	1/1:54:3,51:3:108:51:1822:-154.18,-6.18045,0	1/1:47:0,47:0:0:47:1668:-150.404,-14.1484,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:25:10,15:10:360:15:540:-41.4026,0,-25.2186	0/1:233:105,128:105:3772:128:4600:-344.017,0,-269.538	1/1:232:0,232:0:0:232:8312:-748.025,-69.839,0	1/1:118:0,118:0:0:118:4215:-379.523,-35.5215,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:147:1,146:1:36:146:5236:-467.76,-40.6531,0	1/1:43:0,43:0:0:43:1539:-138.802,-12.9443,0	1/1:210:1,209:1:36:209:7468:-668.292,-59.618,0	1/1:111:0,111:0:0:111:3980:-358.383,-33.4143,0	0/1:92:54,38:54:1940:38:1364:-95.3613,0,-147.181	0/1:137:37,99:37:1324:99:3544:-277.81,0,-76.71	1/1:136:0,135:0:0:135:4820:-433.71,-40.6391,0	1/1:186:0,186:0:0:186:6646:-598.2,-55.9916,0	1/1:151:0,151:0:0:151:5407:-486.744,-45.4555,0	0/1:281:146,135:146:5224:135:4848:-351.875,0,-385.709	0/1:163:73,88:73:2616:88:3152:-235.08,0,-186.862	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	0/1:166:89,77:89:3173:77:2736:-196.505,0,-235.822	0/1:127:85,42:85:3029:42:1508:-97.7829,0,-234.609	0/1:39:9,30:9:324:30:1068:-84.6804,0,-17.7657	0/1:149:85,64:85:3056:64:2294:-161.856,0,-230.414	1/1:44:0,44:0:0:44:1567:-141.305,-13.2453,0	0/1:32:4,28:4:144:28:988:-79.541,0,-3.68066	1/1:23:0,23:0:0:23:828:-74.8432,-6.92369,0	1/1:162:0,162:0:0:162:5771:-519.496,-48.7669,0	0/1:97:52,45:52:1868:45:1611:-116.077,0,-139.199	1/1:15:0,15:0:0:15:540:-48.9319,-4.51545,0	1/1:213:0,213:0:0:213:7601:-684.102,-64.1194,0	1/1:159:1,158:1:36:158:5648:-504.829,-44.2655,0	1/1:267:14,253:14:500:253:9032:-767.462,-35.0388,0	0/1:123:60,63:60:2121:63:2240:-164.281,0,-154.131	0/1:280:131,149:131:4696:149:5327:-395.251,0,-338.509	1/1:174:2,172:2:72:172:6160:-547.657,-45.5425,0	1/1:57:0,57:0:0:57:2043:-184.116,-17.1587,0	0/1:93:42,51:42:1512:51:1816:-135.722,0,-108.379	0/1:101:63,38:63:2252:38:1355:-91.8457,0,-172.539	0/1:70:34,36:34:1216:36:1284:-94.7913,0,-88.6745	1/1:312:0,311:0:0:311:11117:-1000.17,-93.6203,0	1/1:97:0,97:0:0:97:3476:-313.026,-29.1999,0	0/1:298:134,164:134:4804:164:5864:-438.11,0,-342.808	1/1:211:0,211:0:0:211:7540:-678.629,-63.5173,0	1/1:246:0,245:0:0:245:8776:-789.39,-73.7524,0	0/1:194:99,95:99:3560:95:3404:-248.063,0,-262.207	0/1:34:15,19:15:540:19:680:-51.2941,0,-38.6933	1/1:161:0,160:0:0:160:5713:-514.06,-48.1648,0	0/1:147:70,77:70:2493:77:2752:-203.608,0,-180.37	1/1:225:1,224:1:36:224:7996:-716.043,-64.1335,0	1/1:117:0,117:0:0:117:4191:-377.354,-35.2205,0	0/1:54:30,24:30:1080:24:846:-60.2022,0,-81.2576	1/1:104:0,104:0:0:104:3710:-334.1,-31.3071,0	1/1:193:0,193:0:0:193:6881:-619.333,-58.0988,0	0/1:41:18,23:18:644:23:820:-61.7803,0,-45.9484	1/1:96:0,96:0:0:96:3425:-308.312,-28.8989,0	0/1:84:42,41:42:1504:41:1472:-107.431,0,-110.301	0/1:90:31,59:31:1108:59:2120:-163.962,0,-72.9383	0/1:116:46,70:46:1648:70:2494:-189.782,0,-113.689	0/1:73:48,25:48:1724:25:892:-58.6212,0,-133.47	1/1:61:0,61:0:0:61:2184:-196.812,-18.3628,0	1/1:124:0,124:0:0:124:4435:-399.311,-37.3277,0
chr12	23612179	.	T	A	44254.7	PASS	AB=0.53708;ABP=60.1776;AC=48;AF=0.255319;AN=188;AO=2595;CIGAR=1X;DP=9172;DPB=9172;DPRA=1.32401;EPP=5620.62;EPPR=14204.5;GTI=1;LEN=1;MEANALT=1.08333;MQM=56.748;MQMR=59.7357;NS=94;NUMALT=1;ODDS=0.560832;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=92548;QR=233968;RO=6568;RPL=2;RPP=5620.62;RPPR=14221.8;RPR=2593;RUN=1;SAF=0;SAP=5637.98;SAR=2595;SRF=2;SRP=14247.9;SRR=6566;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:75:74,1:74:2652:1:36:0,-18.9827,-235.265	0/1:89:51,38:51:1790:38:1368:-96.1924,0,-134.58	0/1:203:98,101:98:3482:101:3619:-265.205,0,-253.187	0/0:222:221,1:221:7896:1:36:0,-63.2308,-707.019	0/1:99:46,53:46:1644:53:1873:-138.42,0,-117.817	0/1:84:32,52:32:1140:52:1848:-140.158,0,-77.6191	0/0:148:148,0:148:5253:0:0:0,-44.5524,-472.904	0/1:129:74,55:74:2660:55:1958:-137.454,0,-200.792	0/1:138:60,78:60:2130:78:2785:-208.932,0,-150.314	0/0:73:73,0:73:2603:0:0:0,-21.9752,-234.517	0/1:47:17,30:17:590:30:1072:-82.5716,0,-39.2754	0/1:124:61,63:61:2160:63:2256:-165.701,0,-157.226	0/1:58:23,35:23:824:35:1240:-94.0965,0,-57.0202	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.325	0/0:72:71,0:71:2521:0:0:0,-21.3731,-226.778	0/1:63:28,35:28:1000:35:1236:-92.3841,0,-71.3425	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/1:301:133,168:133:4732:168:6021:-450.484,0,-335.337	0/1:168:82,86:82:2944:86:3048:-223.764,0,-214.612	0/0:184:184,0:184:6539:0:0:0,-55.3895,-588.593	0/0:159:159,0:159:5670:0:0:0,-47.8638,-510.418	0/1:88:54,34:54:1940:34:1202:-81.8547,0,-148.38	0/1:113:49,64:49:1748:64:2269:-169.965,0,-123.582	0/1:244:90,154:90:3212:154:5481:-419.662,0,-215.852	0/0:310:310,0:310:11053:0:0:0,-93.3193,-994.481	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.627	0/1:234:97,136:97:3440:136:4849:-365.907,0,-239.311	0/1:113:56,57:56:2000:57:2048:-150.481,0,-146.251	0/1:121:50,71:50:1788:71:2526:-190.933,0,-124.777	0/1:5:3,2:3:108:2:63:-4.47618,0,-8.57002	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/1:17:11,6:11:396:6:216:-14.6477,0,-30.8615	0/1:24:8,16:8:288:16:576:-44.8965,0,-19.0427	0/1:200:86,114:86:3088:114:4043:-303.753,0,-217.923	0/0:65:65,0:65:2287:0:0:0,-19.5669,-206.086	0/0:53:53,0:53:1863:0:0:0,-15.9546,-167.509	0/1:2:1,1:1:32:1:36:-2.9945,0,-2.59725	0/0:198:197,1:197:7016:1:36:0,-56.0175,-627.277	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7948	0/0:234:234,0:234:8344:0:0:0,-70.441,-750.803	0/0:56:56,0:56:1994:0:0:0,-16.8577,-179.718	0/1:54:29,25:29:1036:25:896:-64.6949,0,-77.2979	0/1:136:70,66:70:2500:66:2368:-172.164,0,-184.313	0/0:112:112,0:112:3989:0:0:0,-33.7154,-359.177	0/0:148:147,1:147:5223:1:36:0,-40.9546,-466.611	0/0:114:114,0:114:4064:0:0:0,-34.3174,-365.947	0/1:87:31,56:31:1099:56:1996:-153.499,0,-73.0294	0/1:198:110,87:110:3927:87:3128:-222.032,0,-293.96	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/1:154:74,80:74:2640:80:2854:-210.369,0,-191.391	0/1:73:29,43:29:1028:43:1509:-114.018,0,-70.7902	0/1:17:5,12:5:180:12:432:-34.0584,0,-11.4346	0/1:163:85,78:85:3040:78:2795:-202.366,0,-224.753	0/0:67:67,0:67:2388:0:0:0,-20.169,-215.176	0/1:23:12,11:12:432:11:390:-28.3822,0,-32.296	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:82:81,1:81:2900:1:36:0,-21.0879,-257.559	0/1:94:49,45:49:1747:45:1620:-117.731,0,-129.192	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3808	0/0:111:106,5:106:3768:5:180:0,-16.8623,-322.77	0/0:114:112,2:112:3977:2:72:0,-27.4815,-351.083	0/0:55:51,4:51:1820:4:144:0,-3.24936,-150.771	0/1:76:35,41:35:1235:41:1436:-106.582,0,-88.575	0/1:168:77,91:77:2735:91:3263:-243.057,0,-195.661	0/0:111:108,3:108:3819:3:108:0,-23.3404,-333.834	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.523	0/1:94:49,45:49:1752:45:1596:-115.302,0,-129.627	0/1:28:12,16:12:432:16:574:-43.4967,0,-30.4193	0/1:22:14,8:14:500:8:288:-19.6415,0,-38.713	0/0:167:167,0:167:5924:0:0:0,-50.272,-533.17	0/0:74:74,0:74:2652:0:0:0,-22.2762,-238.916	0/1:122:64,58:64:2280:58:2080:-150.351,0,-167.756	0/0:188:187,1:187:6680:1:36:0,-52.9958,-597.543	0/0:106:106,0:106:3792:0:0:0,-31.9092,-341.377	0/1:108:42,66:42:1500:66:2361:-179.675,0,-102.182	0/1:15:4,11:4:144:11:395:-31.251,0,-8.79817	0/0:119:116,3:116:4151:3:108:0,-25.7522,-363.595	0/1:130:59,71:59:2072:71:2530:-188.545,0,-147.415	0/0:213:212,1:212:7588:1:36:0,-60.5216,-679.351	0/0:51:51,0:51:1816:0:0:0,-15.3525,-163.691	0/1:60:31,29:31:1112:29:1020:-74.0367,0,-82.3276	0/0:60:60,0:60:2119:0:0:0,-18.0618,-190.975	0/0:98:98,0:98:3490:0:0:0,-29.5009,-314.31	0/1:16:6,10:6:216:10:351:-27.0333,0,-14.9672	0/0:68:67,0:67:2363:0:0:0,-20.169,-212.634	0/1:70:25,45:25:900:45:1596:-122.649,0,-60.2456	0/1:38:16,22:16:576:22:788:-59.4279,0,-40.7358	0/1:86:46,40:46:1625:40:1440:-103.748,0,-120.644	0/1:91:25,66:25:892:66:2345:-183.742,0,-53.2056	0/0:73:73,0:73:2576:0:0:0,-21.9752,-232.088	0/0:104:104,0:104:3685:0:0:0,-31.3071,-331.808
chr12	23613647	.	C	T	95581.8	PASS	AB=0.447633;ABP=83.5192;AC=139;AF=0.739362;AN=188;AO=4641;CIGAR=1X;DP=6537;DPB=6537;DPRA=17.5618;EPP=10080.8;EPPR=4115.78;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9233;MQMR=59.9979;NS=94;NUMALT=1;ODDS=1.79375;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=165365;QR=67714;RO=1894;RPL=4641;RPP=10080.8;RPPR=4115.78;RPR=0;RUN=1;SAF=0;SAP=10080.8;SAR=4641;SRF=0;SRP=4115.78;SRR=1894;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1237:-111.632,-10.5361,0	0/1:56:29,27:29:1036:27:949:-68.8651,0,-76.6962	0/1:160:99,61:99:3522:61:2196:-149.55,0,-269.023	1/1:129:1,128:1:36:128:4538:-404.989,-35.2346,0	0/1:23:16,7:16:572:7:252:-16.1053,0,-44.8897	0/1:31:25,6:25:900:6:216:-10.4586,0,-71.9891	1/1:34:1,33:1:36:33:1184:-103.27,-6.63675,0	0/1:107:53,54:53:1862:54:1914:-140.324,0,-135.644	0/1:62:23,39:23:824:39:1396:-107.275,0,-55.8195	1/1:102:0,102:0:0:102:3627:-326.617,-30.7051,0	0/1:72:44,28:44:1568:28:989:-67.6479,0,-119.737	0/1:106:55,51:55:1965:51:1817:-131.9,0,-145.214	0/1:91:43,48:43:1544:48:1724:-128.007,0,-111.859	1/1:100:0,100:0:0:100:3573:-321.742,-30.103,0	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	0/1:55:24,31:24:864:31:1102:-82.9336,0,-61.5259	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:43:0,43:0:0:43:1544:-139.235,-12.9443,0	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	0/1:54:38,16:38:1360:16:572:-35.5569,0,-106.445	0/1:92:54,38:54:1940:38:1341:-93.2933,0,-147.181	1/1:21:0,21:0:0:21:748:-67.6453,-6.32163,0	1/1:84:4,80:4:144:80:2842:-242.702,-11.9729,0	0/1:47:29,18:29:1036:18:629:-42.7854,0,-79.4055	0/1:41:22,19:22:784:19:680:-49.1869,0,-58.5417	0/1:190:93,97:93:3336:97:3457:-254.146,0,-243.261	1/1:129:4,125:4:144:125:4457:-387.987,-25.5193,0	1/1:35:0,35:0:0:35:1260:-113.661,-10.5361,0	0/1:134:73,61:73:2597:61:2161:-154.418,0,-193.639	0/1:123:69,54:69:2484:54:1932:-137.13,0,-186.786	0/1:76:46,30:46:1648:30:1057:-72.5574,0,-125.73	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:13:11,2:11:392:2:72:-2.92333,0,-31.7067	0/1:166:93,73:93:3336:73:2563:-180.945,0,-250.486	1/1:34:0,34:0:0:34:1190:-107.401,-10.235,0	1/1:80:1,79:1:36:79:2824:-250.783,-20.4841,0	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	1/1:117:1,116:1:36:116:4148:-369.906,-31.6222,0	1/1:43:0,43:0:0:43:1528:-136.874,-12.9443,0	1/1:84:0,84:0:0:84:3001:-270.312,-25.2865,0	1/1:79:1,78:1:36:78:2785:-247.291,-20.1831,0	0/1:45:23,22:23:797:22:776:-56.6158,0,-58.4996	0/1:63:37,26:37:1324:26:902:-62.5255,0,-100.497	1/1:51:0,51:0:0:51:1808:-162.731,-15.3525,0	1/1:117:1,116:1:36:116:4091:-364.778,-31.6222,0	1/1:57:0,57:0:0:57:2044:-184.232,-17.1587,0	0/1:92:51,41:51:1816:41:1468:-104.721,0,-136.027	0/1:56:31,25:31:1112:25:892:-63.742,0,-83.5337	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:95:47,48:47:1673:48:1705:-125.136,0,-122.257	0/1:51:35,16:35:1260:16:576:-36.8225,0,-98.353	0/1:13:7,6:7:252:6:216:-15.8771,0,-19.1156	0/1:108:65,43:65:2313:43:1521:-104.665,0,-175.918	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:7:0,7:0:0:7:252:-22.7554,-2.10721,0	1/1:75:0,75:0:0:75:2623:-236.303,-22.5773,0	0/1:93:37,56:37:1332:56:2016:-153.717,0,-92.1866	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:113:0,113:0:0:113:4023:-362.259,-34.0164,0	1/1:101:2,98:2:72:98:3486:-307.113,-23.6261,0	1/1:79:3,76:3:104:76:2720:-235.336,-14.0786,0	0/1:77:40,37:40:1436:37:1307:-94.7503,0,-106.358	0/1:97:66,31:66:2376:31:1086:-68.8451,0,-184.897	1/1:94:0,94:0:0:94:3372:-303.695,-28.2968,0	1/1:68:0,68:0:0:68:2421:-218.144,-20.47,0	0/1:41:26,15:26:932:15:540:-36.5943,0,-71.8566	0/1:44:27,17:27:960:17:612:-42.1681,0,-73.471	0/1:38:24,14:24:860:14:470:-31.1786,0,-66.2827	1/1:68:0,68:0:0:68:2432:-219.136,-20.47,0	1/1:82:1,81:1:36:81:2896:-257.27,-21.0862,0	0/1:119:81,38:81:2880:38:1364:-87.1084,0,-223.615	1/1:105:0,105:0:0:105:3761:-338.69,-31.6082,0	1/1:77:0,77:0:0:77:2737:-246.572,-23.1793,0	0/1:96:53,43:53:1900:43:1536:-109.634,0,-142.379	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:109:0,109:0:0:109:3870:-348.494,-32.8123,0	0/1:63:34,29:34:1209:29:1032:-74.2286,0,-90.1492	1/1:93:3,90:3:108:90:3190:-277.247,-17.9206,0	1/1:53:0,53:0:0:53:1888:-170.198,-15.9546,0	0/1:71:29,42:29:1044:42:1508:-114.641,0,-72.9017	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	1/1:138:1,137:1:36:137:4903:-437.823,-37.9439,0	0/1:28:17,11:17:604:11:396:-27.5539,0,-46.2618	1/1:87:0,87:0:0:87:3122:-280.979,-26.1896,0	0/1:106:55,51:55:1972:51:1817:-131.9,0,-145.846	0/1:71:29,42:29:1044:42:1500:-113.907,0,-72.9017	0/1:130:65,64:65:2324:64:2272:-165.549,0,-170.228	0/1:59:39,20:39:1400:20:720:-47.368,0,-108.538	1/1:76:0,76:0:0:76:2709:-244.053,-22.8783,0	1/1:113:0,113:0:0:113:4040:-363.788,-34.0164,0
chr12	23613683	.	T	C	13535.1	PASS	AB=0.397266;ABP=217.617;AC=46;AF=0.247312;AN=186;AO=936;CIGAR=1X;DP=5305;DPB=5305;DPRA=0.919368;EPP=2035.51;EPPR=9222.82;GTI=4;LEN=1;MEANALT=1;MQM=59.7254;MQMR=59.949;NS=93;NUMALT=1;ODDS=0.944943;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=33276;QR=156204;RO=4369;RPL=0;RPP=2035.51;RPPR=9222.82;RPR=936;RUN=1;SAF=936;SAP=2035.51;SAR=0;SRF=4369;SRP=9490.17;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/1:31:19,12:19:684:12:432:-29.8893,0,-52.5584	0/1:108:70,38:70:2512:38:1301:-84.6809,0,-193.821	0/0:217:217,0:217:7749:0:0:0,-65.3235,-697.442	0/1:27:19,8:19:680:8:288:-18.1396,0,-53.4014	0/1:13:10,3:10:348:3:108:-6.16178,0,-27.7417	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.368	0/1:81:60,21:60:2156:21:748:-43.2537,0,-169.924	0/1:47:25,22:25:896:22:788:-57.0964,0,-66.8119	0/0:47:47,0:47:1683:0:0:0,-14.1484,-151.754	0/1:11:7,4:7:252:4:144:-10.0023,0,-19.7176	0/1:35:23,12:23:820:12:423:-27.869,0,-63.5865	0/1:24:17,7:17:608:7:252:-15.8042,0,-47.8273	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:23:15,8:15:540:8:284:-18.9797,0,-42.0128	0/0:14:14,0:14:495:0:0:0,-4.21442,-44.883	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:58:35,23:35:1242:23:824:-56.9371,0,-94.623	0/1:56:42,14:42:1504:14:491:-27.6588,0,-118.797	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/0:81:81,0:81:2903:0:0:0,-24.3834,-261.505	0/1:15:11,4:11:392:4:140:-8.42913,0,-31.1046	0/1:39:29,10:29:1040:10:352:-20.278,0,-82.166	0/1:225:134,91:134:4808:91:3251:-225.067,0,-365.143	0/0:166:166,0:166:5903:0:0:0,-49.971,-531.334	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:208:109,99:109:3881:99:3518:-254.175,0,-286.87	0/1:90:57,33:57:2052:33:1184:-79.7756,0,-157.859	0/1:62:36,26:36:1280:26:923:-64.7206,0,-96.8278	.:.:.:.:.:.:.:.	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:10:3,7:3:108:7:239:-18.8324,0,-7.06487	0/1:78:34,44:34:1220:44:1564:-117.563,0,-86.6165	0/0:112:112,0:112:4020:0:0:0,-33.7154,-361.988	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:82:82,0:82:2935:0:0:0,-24.6845,-264.384	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:124:124,0:124:4436:0:0:0,-37.3277,-399.412	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.1423	0/1:25:13,12:13:468:12:424:-30.9707,0,-34.9339	0/1:84:53,31:53:1900:31:1095:-73.5708,0,-145.99	0/0:99:98,1:98:3507:1:36:0,-26.2037,-312.241	0/0:170:169,1:169:6051:1:36:0,-47.5768,-541.037	0/0:78:78,0:78:2792:0:0:0,-23.4803,-251.52	0/1:75:44,31:44:1575:31:1112:-77.8141,0,-119.464	0/1:39:25,14:25:892:14:500:-33.596,0,-68.8595	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/1:91:61,30:61:2180:30:1059:-68.2248,0,-169.073	0/1:51:21,30:21:756:30:1072:-81.4399,0,-53.0147	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:83:49,34:49:1743:34:1216:-84.7611,0,-132.168	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7975	0/1:12:8,4:8:288:4:144:-9.70126,0,-22.655	0/0:16:16,0:16:568:0:0:0,-4.81648,-51.4519	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:49:24,25:24:855:25:878:-64.569,0,-62.5197	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:177:177,0:177:6330:0:0:0,-53.2823,-569.79	0/0:101:99,2:99:3542:2:68:0,-23.9463,-312.522	0/0:30:28,2:28:1008:2:72:0,-2.19418,-84.1996	0/1:66:36,30:36:1284:30:1080:-77.6406,0,-95.9954	0/1:134:81,53:81:2904:53:1883:-129.356,0,-221.256	0/0:115:115,0:115:4103:0:0:0,-34.6184,-369.455	0/0:12:12,0:12:432:0:0:0,-3.61236,-39.2212	0/1:50:31,19:31:1112:19:680:-46.4777,0,-85.3222	0/1:31:18,13:18:633:13:464:-32.7656,0,-47.9631	0/1:19:6,13:6:216:13:468:-36.7401,0,-14.0709	0/0:141:141,0:141:5036:0:0:0,-42.4452,-453.387	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:56:39,17:39:1395:17:592:-36.7225,0,-108.991	0/0:122:122,0:122:4367:0:0:0,-36.7257,-393.197	0/0:72:72,0:72:2565:0:0:0,-21.6742,-231.098	0/1:35:25,10:25:878:10:360:-22.2083,0,-68.7998	0/1:22:13,9:13:468:9:320:-22.5197,0,-35.837	0/0:78:78,0:78:2788:0:0:0,-23.4803,-251.161	0/1:56:36,20:36:1296:20:703:-46.7266,0,-99.8961	0/0:155:155,0:155:5519:0:0:0,-46.6596,-496.836	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.416	0/1:13:8,5:8:284:5:180:-12.6247,0,-21.99	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:45:45,0:45:1592:0:0:0,-13.5463,-143.57	0/1:14:11,3:11:396:3:108:-5.86075,0,-31.7683	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4292	0/1:29:23,6:23:810:6:216:-11.0606,0,-64.4891	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:35:20,15:20:711:15:540:-38.3959,0,-53.7796	0/1:20:4,16:4:144:16:572:-45.7928,0,-7.29302	0/0:157:157,0:157:5583:0:0:0,-47.2617,-502.587	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.559
chr12	23638380	.	TA	TG,TGT	148253	PASS	AB=0.430727,0.568016;ABP=168.779,162.816;AC=138,50;AF=0.734043,0.265957;AN=188;AO=4733,2272;CIGAR=1M1X,1M1I1X;DP=7017;DPB=8153;DPRA=15.0796,1.32187;EPP=10271.9,4936.6;EPPR=0;GTI=5;LEN=1,3;MEANALT=1.67742,2.09259;MQM=59.9658,58.7249;MQMR=0;NS=94;NUMALT=2;ODDS=0.732181;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=169028,80346;QR=0;RO=0;RPL=4732,2272;RPP=10271.9,4936.6;RPPR=0;RPR=1,0;RUN=1,1;SAF=4733,2272;SAP=10280.6,4936.6;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,39,0:0:0:39,0:1400,0:-126.299,-11.7402,0,-126.299,-11.7402,-126.299	1/2:61:0,31,30:0:0:31,30:1112,1061:-176.777,-86.0724,-76.7404,-91.0594,0,-82.0285	1/2:91:0,41,49:0:0:41,49:1468,1736:-260.547,-140.827,-128.485,-119.812,0,-105.061	1/1:166:0,166,0:0:0:166,0:5887,0:-529.939,-49.971,0,-529.939,-49.971,-529.939	1/2:57:0,25,32:0:0:25,32:900,1141:-166.755,-93.3184,-85.7927,-73.7953,0,-64.1623	1/2:36:0,13,23:0:0:13,23:445,804:-101.712,-65.5946,-61.6812,-36.462,0,-29.5383	1/1:44:0,44,0:0:0:44,0:1576,0:-142.129,-13.2453,0,-142.129,-13.2453,-142.129	1/2:101:0,36,65:0:0:36,65:1296,2325:-294.935,-189.187,-178.35,-106.107,0,-86.5399	1/2:107:0,57,50:0:0:57,50:2048,1783:-312.616,-145.541,-128.382,-167.433,0,-152.381	1/1:74:0,72,0:0:0:72,0:2565,0:-230.739,-21.6742,0,-230.739,-21.6742,-230.739	1/2:62:0,39,23:0:0:39,23:1404,828:-182.477,-67.9181,-56.1779,-114.919,0,-107.995	1/2:103:0,46,55:0:0:46,55:1646,1953:-293.147,-158.921,-145.074,-134.293,0,-117.737	1/2:80:0,48,32:0:0:48,32:1706,1112:-229.538,-90.5127,-76.0633,-139.375,0,-129.742	1/1:42:0,42,0:0:0:42,0:1508,0:-136.015,-12.6433,0,-136.015,-12.6433,-136.015	1/1:93:0,93,0:0:0:93,0:3336,0:-300.449,-27.9958,0,-300.449,-27.9958,-300.449	1/2:62:0,23,39:0:0:23,39:828,1386:-180.796,-113.234,-106.31,-67.9204,0,-56.1803	1/1:26:0,26,0:0:0:26,0:917,0:-82.8364,-7.82678,0,-82.8364,-7.82678,-82.8364	1/1:34:0,34,0:0:0:34,0:1212,0:-109.386,-10.235,0,-109.386,-10.235,-109.386	1/1:29:0,29,0:0:0:29,0:1032,0:-93.1935,-8.72987,0,-93.1935,-8.72987,-93.1935	1/2:116:0,38,78:0:0:38,78:1349,2766:-335.524,-225.61,-214.171,-110.269,0,-86.7888	1/2:136:0,57,79:0:0:57,79:2048,2786:-394.173,-227.096,-209.938,-167.433,0,-143.651	1/1:63:0,63,0:0:0:63,0:2249,0:-202.671,-18.9649,0,-202.671,-18.9649,-202.671	1/1:82:0,82,0:0:0:82,0:2939,0:-264.731,-24.6845,0,-264.731,-24.6845,-264.731	1/2:71:0,24,47:0:0:24,47:864,1666:-206.567,-136.067,-128.843,-70.8578,0,-56.7094	1/2:93:0,26,67:0:0:26,67:936,2376:-270.127,-193.753,-185.926,-76.7327,0,-56.5637	1/2:219:0,85,134:0:0:85,134:3060,4724:-634.402,-384.719,-359.131,-250.04,0,-209.702	1/1:193:0,192,0:0:0:192,0:6843,0:-615.6,-57.7978,0,-615.6,-57.7978,-615.6	1/1:38:0,38,0:0:0:38,0:1360,0:-122.701,-11.4391,0,-122.701,-11.4391,-122.701	1/2:205:0,70,134:0:0:70,134:2508,4736:-590.305,-385.761,-364.689,-204.649,0,-164.311	1/2:98:0,43,55:0:0:43,55:1544,1944:-284.534,-158.581,-145.637,-126.309,0,-109.752	1/2:111:0,39,72:0:0:39,72:1404,2546:-322.217,-207.656,-195.916,-114.919,0,-93.2449	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/1:21:0,21,0:0:0:21,0:737,0:-66.6506,-6.32163,0,-66.6506,-6.32163,-66.6506	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/2:9:0,4,5:0:0:4,5:144,180:-26.792,-15.0423,-13.8382,-12.1095,0,-10.6043	1/2:24:0,17,7:0:0:17,7:612,230:-68.729,-18.769,-13.6515,-50.2959,0,-48.1887	1/2:207:0,104,103:0:0:104,103:3736,3648:-602.196,-297.421,-266.113,-305.132,0,-274.126	1/1:74:0,74,0:0:0:74,0:2592,0:-233.524,-22.2762,0,-233.524,-22.2762,-233.524	1/1:49:0,49,0:0:0:49,0:1726,0:-155.622,-14.7505,0,-155.622,-14.7505,-155.622	1/2:6:0,2,4:0:0:2,4:72,142:-17.756,-11.8791,-11.277,-6.23466,0,-5.03054	1/1:56:0,56,0:0:0:56,0:2008,0:-180.993,-16.8577,0,-180.993,-16.8577,-180.993	1/1:34:0,34,0:0:0:34,0:1201,0:-108.394,-10.235,0,-108.394,-10.235,-108.394	1/1:58:0,56,1:0:0:56,1:1943,36:-174.773,-16.8577,0,-171.836,-13.9203,-171.535	1/1:57:0,57,0:0:0:57,0:2048,0:-184.592,-17.1587,0,-184.592,-17.1587,-184.592	1/2:60:0,22,38:0:0:22,38:773,1346:-172.832,-109.925,-103.302,-63.2586,0,-51.8195	1/2:124:0,41,83:0:0:41,83:1464,2951:-360.135,-240.778,-228.436,-119.714,0,-94.7283	1/1:53:0,53,0:0:0:53,0:1892,0:-170.558,-15.9546,0,-170.558,-15.9546,-170.558	1/1:69:0,69,0:0:0:69,0:2467,0:-222.283,-20.7711,0,-222.283,-20.7711,-222.283	1/1:74:0,74,0:0:0:74,0:2645,0:-238.295,-22.2762,0,-238.295,-22.2762,-238.295	1/2:99:0,40,59:0:0:40,59:1432,2089:-287.233,-170.453,-158.412,-117.136,0,-99.3756	1/2:144:0,55,89:0:0:55,89:1970,3119:-414.619,-253.956,-237.399,-161.018,0,-134.227	1/1:6:0,6,0:0:0:6,0:216,0:-19.7905,-1.80618,0,-19.7905,-1.80618,-19.7905	1/2:138:0,61,77:0:0:61,77:2188,2689:-397.397,-218.928,-200.565,-178.823,0,-155.644	1/2:56:0,25,31:0:0:25,31:885,1092:-161.343,-89.2555,-81.7297,-72.4408,0,-63.1088	1/2:5:0,2,3:0:0:2,3:72,95:-13.852,-7.95982,-7.35776,-6.23466,0,-5.33157	1/2:96:0,48,48:0:0:48,48:1724,1700:-278.665,-138.342,-123.893,-140.678,0,-126.229	1/1:27:0,27,0:0:0:27,0:972,0:-87.7979,-8.12781,0,-87.7979,-8.1278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chr12	23670718	.	C	T	163493	PASS	AB=0.475669;ABP=30.6958;AC=136;AF=0.73913;AN=184;AO=7656;CIGAR=1X;DP=10502;DPB=10502;DPRA=28.8407;EPP=15829.8;EPPR=5825.52;GTI=1;LEN=1;MEANALT=1.03297;MQM=59.8968;MQMR=59.9617;NS=92;NUMALT=1;ODDS=2.65296;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=272774;QR=101306;RO=2843;RPL=7563;RPP=15829.8;RPPR=5825.52;RPR=93;RUN=1;SAF=0;SAP=16627.8;SAR=7656;SRF=0;SRP=6176.51;SRR=2843;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:119:66,53:66:2338:53:1904:-135.608,0,-174.854	0/1:198:96,102:96:3399:102:3635:-267.74,0,-246.472	1/1:257:0,256:0:0:256:9126:-820.915,-77.0637,0	0/1:87:45,42:45:1589:42:1504:-109.465,0,-117.109	0/1:27:11,16:11:396:16:576:-44.0472,0,-27.8549	1/1:50:0,50:0:0:50:1769:-159.481,-15.0515,0	0/1:199:114,84:114:4081:84:3007:-210.896,0,-307.51	0/1:189:83,106:83:2915:106:3730:-278.967,0,-205.689	1/1:90:1,89:1:32:89:3158:-281.244,-23.8934,0	0/1:40:17,23:17:608:23:824:-62.4421,0,-43.0108	0/1:70:29,41:29:1021:41:1468:-111.344,0,-71.1282	0/1:70:35,35:35:1260:35:1256:-92.2732,0,-92.6334	1/1:38:1,37:1:36:37:1324:-115.864,-7.84087,0	1/1:72:1,71:1:36:71:2541:-225.341,-18.0759,0	0/1:81:42,39:42:1512:39:1389:-100.867,0,-111.991	1/1:27:1,26:1:36:26:932:-80.6006,-4.52954,0	1/1:31:0,31:0:0:31:1100:-99.3103,-9.33193,0	1/1:24:0,24:0:0:24:853:-77.0191,-7.22472,0	0/1:199:98,101:98:3513:101:3613:-265.457,0,-256.473	0/1:306:146,160:146:5176:160:5674:-418.603,0,-373.087	1/1:116:0,116:0:0:116:4122:-371.163,-34.9195,0	1/1:169:0,169:0:0:169:6042:-543.876,-50.8741,0	0/1:79:40,39:40:1425:39:1381:-100.805,0,-104.764	0/1:92:45,47:45:1605:47:1684:-124.152,0,-117.043	0/1:304:160,144:160:5703:144:5169:-373.805,0,-421.869	1/1:384:0,384:0:0:384:13647:-1228.01,-115.596,0	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:322:174,148:174:6199:148:5288:-379.125,0,-461.073	0/1:190:108,82:108:3865:82:2925:-206.287,0,-290.848	0/1:179:95,84:95:3352:84:3004:-216.705,0,-248.009	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	.:.:.:.:.:.:.:.	0/1:8:4,4:4:129:4:144:-10.9054,0,-9.51942	0/1:15:5,10:5:180:10:360:-27.2828,0,-12.0366	0/1:192:87,105:87:3120:105:3768:-281.521,0,-223.228	1/1:126:0,126:0:0:126:4466:-402.109,-37.9298,0	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	.:.:.:.:.:.:.:.	1/1:143:0,143:0:0:143:5109:-459.952,-43.0473,0	1/1:22:0,22:0:0:22:776:-70.1622,-6.62266,0	1/1:172:0,172:0:0:172:6109:-549.903,-51.7772,0	1/1:70:0,70:0:0:70:2446:-220.39,-21.0721,0	0/1:55:32,23:32:1140:23:819:-57.4756,0,-86.3526	0/1:145:58,87:58:2065:87:3087:-234.406,0,-142.47	1/1:197:0,197:0:0:197:7034:-633.099,-59.3029,0	1/1:257:0,257:0:0:257:9154:-823.834,-77.3647,0	1/1:126:0,126:0:0:126:4516:-406.597,-37.9298,0	0/1:184:90,94:90:3232:94:3360:-247.225,0,-235.712	0/1:132:82,50:82:2929:50:1754:-118.403,0,-224.107	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	0/1:115:57,58:57:2037:58:2084:-153.211,0,-148.982	0/1:62:31,31:31:1086:31:1107:-81.2771,0,-79.3812	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:213:136,77:136:4848:77:2760:-184.492,0,-372.127	1/1:73:0,73:0:0:73:2612:-235.298,-21.9752,0	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:10:0,10:0:0:10:341:-31.0178,-3.0103,0	1/1:85:0,85:0:0:85:3037:-273.559,-25.5876,0	0/1:99:47,52:47:1669:52:1849:-136.886,0,-120.693	1/1:5:0,5:0:0:5:165:-15.1736,-1.50515,0	1/1:262:0,262:0:0:262:9343:-840.339,-78.8699,0	1/1:244:4,239:4:144:239:8488:-750.639,-60.0766,0	1/1:79:6,73:6:216:73:2605:-214.902,-3.99086,0	0/1:119:62,57:62:2228:57:2038:-147.865,0,-164.961	0/1:371:195,176:195:6970:176:6161:-442.799,0,-515.68	1/1:261:0,261:0:0:261:9316:-838.402,-78.5688,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:61:29,32:29:1044:32:1133:-83.9067,0,-75.912	0/1:44:28,16:28:1004:16:572:-38.5681,0,-77.4305	0/1:18:10,8:10:360:8:284:-20.4848,0,-27.3258	1/1:131:0,131:0:0:131:4658:-419.271,-39.4349,0	1/1:124:0,124:0:0:124:4426:-398.486,-37.3277,0	0/1:200:125,75:125:4420:75:2681:-181.3,0,-337.764	1/1:231:0,231:0:0:231:8221:-739.896,-69.5379,0	1/1:131:1,130:1:36:130:4616:-411.48,-35.8367,0	0/1:144:82,62:82:2891:62:2209:-155.723,0,-217.075	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:111:0,111:0:0:111:3965:-357.039,-33.4143,0	0/1:137:70,67:70:2493:67:2377:-172.946,0,-183.38	1/1:221:0,221:0:0:221:7859:-706.398,-66.5276,0	1/1:58:2,56:2:72:56:1989:-172.446,-10.623,0	0/1:56:32,24:32:1152:24:860:-60.8642,0,-87.1325	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:145:0,145:0:0:145:5208:-468.857,-43.6494,0	0/1:23:17,6:17:612:6:216:-12.8668,0,-48.4897	1/1:58:0,58:0:0:58:2076:-187.105,-17.4597,0	0/1:65:42,23:42:1504:23:824:-54.9164,0,-116.088	0/1:29:13,16:13:464:16:572:-43.0836,0,-33.3676	0/1:44:18,26:18:648:26:936:-71.3132,0,-45.4066	0/1:90:63,27:63:2264:27:957:-59.3503,0,-176.93	1/1:243:0,243:0:0:243:8671:-780.363,-73.1503,0	1/1:102:0,102:0:0:102:3638:-327.618,-30.7051,0
chr12	23772105	.	T	C	92697.5	PASS	AB=0.501952;ABP=3.10357;AC=138;AF=0.741935;AN=186;AO=4393;CIGAR=1X;DP=5807;DPB=5807;DPRA=15.769;EPP=9490.24;EPPR=3053.95;GTI=3;LEN=1;MEANALT=1.01087;MQM=59.9895;MQMR=60;NS=93;NUMALT=1;ODDS=0.295489;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=156740;QR=50525;RO=1413;RPL=4387;RPP=9490.24;RPPR=3053.95;RPR=6;RUN=1;SAF=0;SAP=9542.29;SAR=4393;SRF=0;SRP=3071.3;SRR=1413;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:71:35,36:35:1256:36:1245:-90.9739,0,-91.9722	0/1:56:32,24:32:1148:24:864:-61.2249,0,-86.7722	1/1:149:0,149:0:0:149:5290:-476.198,-44.8535,0	0/1:25:12,13:12:428:13:455:-33.7562,0,-31.3331	0/1:25:11,14:11:392:14:500:-37.8104,0,-28.0943	1/1:64:0,64:0:0:64:2264:-204.021,-19.2659,0	0/1:73:42,31:42:1504:31:1116:-78.7765,0,-113.679	0/1:83:42,41:42:1504:41:1460:-106.71,0,-110.669	1/1:108:0,108:0:0:108:3856:-347.236,-32.5112,0	0/1:25:10,15:10:360:15:531:-40.5962,0,-25.2186	0/1:58:24,34:24:856:34:1212:-91.9266,0,-59.9014	0/1:49:21,28:21:756:28:1002:-75.7453,0,-53.6168	1/1:42:0,42:0:0:42:1491:-134.484,-12.6433,0	1/1:64:0,64:0:0:64:2282:-205.641,-19.2659,0	0/1:38:24,14:24:864:14:496:-33.5351,0,-66.6434	1/1:34:0,34:0:0:34:1208:-109.026,-10.235,0	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	0/1:129:58,71:58:2080:71:2525:-188.668,0,-148.637	0/1:107:60,47:60:2156:47:1672:-118.557,0,-162.097	1/1:59:0,59:0:0:59:2108:-189.989,-17.7608,0	1/1:48:0,48:0:0:48:1705:-153.734,-14.4494,0	0/1:57:43,14:43:1544:14:504:-28.5394,0,-122.094	0/1:33:15,18:15:536:18:620:-46.1862,0,-38.6408	0/1:249:136,113:136:4853:113:4027:-287.662,0,-361.967	1/1:113:0,113:0:0:113:4039:-363.698,-34.0164,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	0/1:150:79,71:79:2798:71:2548:-184.416,0,-206.904	0/1:95:45,50:45:1578:50:1780:-131.883,0,-113.709	0/1:87:41,46:41:1476:46:1644:-122.059,0,-106.947	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/1:126:58,68:58:2080:68:2425:-180.574,0,-149.54	1/1:128:0,128:0:0:128:4580:-412.363,-38.5318,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	.:.:.:.:.:.:.:.	1/1:261:0,261:0:0:261:9335:-840.114,-78.5688,0	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:58:0,58:0:0:58:2069:-186.48,-17.4597,0	1/1:45:0,45:0:0:45:1606:-144.829,-13.5464,0	0/1:51:22,29:22:792:29:1040:-78.5618,0,-56.2531	0/1:70:27,43:27:972:43:1530:-116.92,0,-66.7258	1/1:50:0,50:0:0:50:1773:-159.851,-15.0515,0	1/1:85:0,85:0:0:85:3033:-273.199,-25.5876,0	1/1:79:0,79:0:0:79:2844:-256.197,-23.7814,0	0/1:59:32,27:32:1148:27:972:-70.0371,0,-85.8691	0/1:122:57,65:57:2044:65:2320:-172.335,0,-147.506	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:69:23,46:23:828:46:1632:-126.395,0,-54.073	0/1:18:8,10:8:288:10:360:-27.3258,0,-20.8489	0/1:7:1,6:1:36:6:201:-16.3098,0,-1.49106	0/1:96:70,26:70:2477:26:932:-55.3,0,-194.284	1/1:27:0,27:0:0:27:927:-83.7358,-8.12781,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	0/1:76:29,47:29:1044:47:1684:-128.969,0,-71.3965	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:135:0,135:0:0:135:4802:-432.336,-40.6391,0	1/1:130:0,130:0:0:130:4668:-420.28,-39.1339,0	1/1:58:1,56:1:36:56:2008:-177.395,-13.9203,0	0/1:34:16,18:16:576:18:648:-48.4169,0,-41.94	0/1:105:55,50:55:1942:50:1781:-128.964,0,-143.444	1/1:78:0,78:0:0:78:2781:-250.516,-23.4803,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:45:0,45:0:0:45:1608:-145.01,-13.5464,0	0/1:42:24,18:24:856:18:644:-45.6473,0,-64.7178	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.2125	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	1/1:43:1,42:1:36:42:1500:-131.696,-9.34602,0	0/1:76:30,46:30:1072:46:1648:-125.73,0,-73.9142	1/1:133:1,132:1:36:132:4704:-419.924,-36.4387,0	1/1:23:0,23:0:0:23:824:-74.4833,-6.92369,0	0/1:76:43,33:43:1544:33:1173:-82.9973,0,-116.375	0/1:6:1,5:1:36:5:176:-14.3788,0,-1.79209	1/1:75:0,75:0:0:75:2688:-242.165,-22.5773,0	0/1:47:23,24:23:828:24:860:-63.5734,0,-60.6957	1/1:155:0,155:0:0:155:5525:-497.374,-46.6597,0	1/1:67:0,67:0:0:67:2400:-216.257,-20.169,0	0/1:62:26,36:26:921:36:1292:-97.9199,0,-64.5413	1/1:55:0,55:0:0:55:1965:-177.124,-16.5567,0	1/1:96:3,93:3:108:93:3321:-289.032,-18.8237,0	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	1/1:53:0,53:0:0:53:1874:-168.936,-15.9546,0	0/1:59:27,32:27:968:32:1152:-86.2294,0,-69.6766	0/1:37:15,22:15:536:22:788:-60.1067,0,-37.4367	0/1:63:22,41:22:788:41:1470:-113.631,0,-52.2799	0/1:55:39,16:39:1400:16:572:-35.2568,0,-109.743	1/1:71:0,71:0:0:71:2535:-228.401,-21.3731,0	1/1:78:0,78:0:0:78:2788:-251.16,-23.4803,0
chr12	23782758	.	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chr12	23782764	.	G	C	66823.2	PASS	AB=0.493958;ABP=4.92584;AC=48;AF=0.255319;AN=188;AO=2999;CIGAR=1X;DP=11874;DPB=11874;DPRA=1.08919;EPP=6515.26;EPPR=19240.1;GTI=0;LEN=1;MEANALT=1.12281;MQM=59.934;MQMR=59.9818;NS=94;NUMALT=1;ODDS=7.36936;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105770;QR=312021;RO=8859;RPL=1373;RPP=49.357;RPPR=228.438;RPR=1626;RUN=1;SAF=1373;SAP=49.357;SAR=1626;SRF=3950;SRP=228.438;SRR=4909;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:56:56,0:56:1957:0:0:0,-16.8577,-176.401	0/1:133:71,62:71:2552:62:2162:-154.806,0,-189.893	0/1:246:139,107:139:4889:107:3776:-265.985,0,-366.111	0/0:274:274,0:274:9656:0:0:0,-82.4822,-869.007	0/1:59:37,22:37:1316:22:769:-51.7591,0,-100.981	0/1:29:10,19:10:347:19:675:-52.3471,0,-22.8337	0/0:99:99,0:99:3508:0:0:0,-29.802,-315.931	0/1:222:118,104:118:4134:104:3694:-265.79,0,-304.481	0/1:161:82,79:82:2873:79:2783:-202.238,0,-210.343	0/0:108:108,0:108:3774:0:0:0,-32.5112,-339.859	0/1:97:48,49:48:1683:49:1739:-127.592,0,-122.553	0/1:154:78,76:78:2720:76:2659:-193.196,0,-198.686	0/1:126:67,59:67:2376:59:2060:-147.731,0,-176.169	0/0:129:129,0:129:4455:0:0:0,-38.8329,-401.127	0/0:142:141,1:141:4950:1:36:0,-39.148,-442.059	0/1:95:39,56:39:1375:56:1925:-144.923,0,-95.45	0/0:92:87,0:87:3091:0:0:0,-26.1896,-278.064	0/0:92:92,0:92:3232:0:0:0,-27.6948,-291.104	0/0:66:66,0:66:2323:0:0:0,-19.868,-209.331	0/1:250:119,130:119:4213:130:4644:-342.838,0,-304.074	0/1:213:110,103:110:3914:103:3640:-263.684,0,-288.33	0/0:54:54,0:54:1918:0:0:0,-16.2556,-172.894	0/0:168:167,1:167:5920:1:36:0,-46.9748,-529.313	0/1:144:83,61:83:2922:61:2151:-150.507,0,-219.866	0/1:106:52,53:52:1797:53:1853:-135.219,0,-130.183	0/1:311:155,156:155:5471:156:5548:-405.826,0,-398.899	0/0:281:281,0:281:9961:0:0:0,-84.5894,-896.437	0/0:49:49,0:49:1735:0:0:0,-14.7505,-156.434	0/1:300:139,161:139:4915:161:5739:-426.318,0,-352.193	0/1:101:42,59:42:1504:59:2112:-159.939,0,-105.251	0/1:126:73,53:73:2592:53:1862:-129.926,0,-195.597	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/0:6:6,0:6:197:0:0:0,-1.80618,-18.0513	0/1:11:7,4:7:248:4:135:-9.17118,0,-19.3529	0/1:10:4,6:4:140:6:212:-16.4145,0,-9.93428	0/1:277:146,130:146:5211:130:4561:-327.218,0,-385.686	0/0:109:109,0:109:3815:0:0:0,-32.8123,-343.547	0/0:84:84,0:84:2908:0:0:0,-25.2865,-261.954	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:309:309,0:309:10880:0:0:0,-93.0183,-979.104	0/0:55:55,0:55:1909:0:0:0,-16.5566,-172.083	0/0:198:198,0:198:6964:0:0:0,-59.6039,-626.834	0/0:119:119,0:119:4161:0:0:0,-35.8226,-374.647	0/1:104:50,54:50:1754:54:1894:-139.43,0,-126.833	0/1:144:75,69:75:2667:69:2434:-175.966,0,-196.841	0/0:154:153,1:153:5373:1:36:0,-42.7603,-480.106	0/0:241:241,0:241:8555:0:0:0,-72.5482,-769.952	0/0:129:126,3:126:4476:3:108:0,-28.7577,-392.933	0/1:190:104,86:104:3669:86:3061:-218.52,0,-273.218	0/1:166:74,92:74:2647:92:3243:-242.119,0,-188.505	0/1:10:6,4:6:201:4:144:-10.3033,0,-15.4067	0/1:196:101,95:101:3546:95:3358:-243.437,0,-260.346	0/1:65:40,25:40:1409:25:892:-61.0327,0,-107.538	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/1:188:102,86:102:3600:86:3061:-219.092,0,-267.612	0/0:67:67,0:67:2343:0:0:0,-20.169,-211.128	0/1:13:6,7:6:216:7:252:-19.1156,0,-15.8771	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:107:107,0:107:3780:0:0:0,-32.2102,-340.398	0/1:176:84,92:84:2915:92:3212:-236.322,0,-209.605	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/0:175:175,0:175:6194:0:0:0,-52.6802,-557.532	0/0:153:152,1:152:5371:1:36:0,-42.4593,-479.926	0/0:106:101,4:101:3541:4:144:0,-18.6544,-305.587	0/1:115:49,66:49:1721:66:2321:-174.529,0,-120.554	0/1:156:92,64:92:3269:64:2233:-154.264,0,-247.47	0/0:168:166,2:166:5885:2:63:0,-44.5899,-523.78	0/0:55:54,0:54:1890:0:0:0,-16.2556,-169.7	0/0:89:89,0:89:3148:0:0:0,-26.7917,-283.538	0/1:107:52,53:52:1835:53:1864:-136.069,0,-133.459	0/1:10:4,6:4:144:6:212:-16.4145,0,-10.3033	0/0:98:98,0:98:3408:0:0:0,-29.5009,-306.927	0/0:175:175,0:175:6188:0:0:0,-52.6802,-557.02	0/1:234:112,122:112:3948:122:4286:-315.472,0,-285.074	0/0:191:191,0:191:6757:0:0:0,-57.4967,-608.21	0/0:128:128,0:128:4494:0:0:0,-38.5318,-404.632	0/1:160:82,78:82:2892:78:2765:-200.926,0,-212.351	0/1:19:12,7:12:423:7:252:-17.3094,0,-32.6855	0/0:162:162,0:162:5731:0:0:0,-48.7669,-515.909	0/1:200:83,117:83:2942:117:4119:-310.676,0,-204.809	0/0:233:231,1:231:8144:1:36:0,-66.6005,-729.387	0/0:171:170,0:170:5956:0:0:0,-51.1751,-535.796	0/1:105:52,53:52:1809:53:1856:-135.706,0,-131.481	0/0:108:107,0:107:3735:0:0:0,-32.2102,-336.033	0/0:199:199,0:199:6863:0:0:0,-59.905,-617.757	0/1:58:32,26:32:1133:26:905:-64.3031,0,-84.8169	0/0:90:90,0:90:3172:0:0:0,-27.0927,-285.705	0/1:104:51,53:51:1739:53:1840:-134.566,0,-125.483	0/1:64:44,20:44:1534:20:720:-45.8629,0,-119.084	0/1:144:78,66:78:2754:66:2288:-162.829,0,-204.755	0/1:113:35,78:35:1234:78:2752:-213.905,0,-77.3463	0/0:146:145,1:145:5168:1:36:0,-40.3521,-461.662	0/0:166:165,0:165:5754:0:0:0,-49.6699,-517.626
chr12	23795189	.	AGGCA	AGCA,AGTCA	211608	PASS	AB=0.517043,0.47951;ABP=16.1855,22.0537;AC=141,47;AF=0.75,0.25;AN=188;AO=7553,2516;CIGAR=1M1D3M,2M1X2M;DP=10095;DPB=8581.6;DPRA=0,1.18966;EPP=16404.1,5466.43;EPPR=5.18177;GTI=0;LEN=1,1;MEANALT=1.81915,2.25455;MQM=50.4773,57.1172;MQMR=60;NS=94;NUMALT=2;ODDS=1.97658;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=267983,88307;QR=31;RO=1;RPL=7553,2516;RPP=16404.1,5466.43;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=16404.1,5466.43;SAR=7553,2516;SRF=0;SRP=5.18177;SRR=1;TYPE=del,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:30:0,30,0:0:0:30,0:1068,0:-96.0505,-9.0309,0,-96.0505,-9.0309,-96.0505	1/2:114:0,48,64:0:0:48,64:1707,2218:-317.578,-179.203,-164.754,-138.382,0,-119.116	1/2:88:0,45,43:0:0:45,43:1577,1495:-248.967,-121.586,-108.039,-127.729,0,-114.784	1/1:345:0,344,0:0:0:344,0:12214,0:-1093.21,-103.554,0,-1093.21,-103.554,-1093.21	1/2:89:0,54,35:0:0:54,35:1928,1252:-258.474,-102.223,-85.9672,-156.607,0,-146.071	1/2:89:0,48,41:0:0:48,41:1688,1443:-254.009,-117.236,-102.787,-137.123,0,-124.781	1/1:209:0,209,0:0:0:209,0:7416,0:-663.812,-62.9153,0,-663.812,-62.9153,-663.812	1/2:216:0,104,112:0:0:104,112:3668,3896:-610.651,-315.076,-283.769,-295.922,0,-262.207	1/2:161:0,97,62:0:0:97,62:3445,2179:-454.448,-175.736,-146.536,-278.71,0,-260.046	1/1:143:0,142,0:0:0:142,0:5044,0:-451.306,-42.7463,0,-451.306,-42.7463,-451.306	1/2:37:0,23,14:0:0:23,14:815,492:-106.366,-40.3961,-33.4724,-66.3215,0,-62.1071	1/2:90:0,54,36:0:0:54,36:1924,1272:-259.711,-103.53,-87.2743,-156.534,0,-145.697	1/2:72:0,37,34:0:0:37,34:1324,1197:-204.81,-97.3766,-86.2384,-107.433,0,-97.1982	1/1:55:0,55,0:0:0:55,0:1955,0:-175.117,-16.5567,0,-175.117,-16.5567,-175.117	1/1:71:0,71,0:0:0:71,0:2538,0:-227.642,-21.3731,0,-227.642,-21.3731,-227.642	1/2:37:0,20,17:0:0:20,17:703,608:-106.965,-49.8971,-43.8765,-57.4221,0,-52.3046	1/1:68:0,68,0:0:0:68,0:2407,0:-215.879,-20.47,0,-215.879,-20.47,-215.879	1/1:68:0,68,0:0:0:68,0:2416,0:-215.892,-20.47,0,-215.892,-20.47,-215.892	1/1:35:0,34,0:0:0:34,0:1208,0:-108.118,-10.235,0,-108.118,-10.235,-108.118	1/2:433:0,241,189:0:0:241,189:8628,6661:-1241.26,-541.583,-469.034,-699.678,0,-642.783	1/2:134:0,65,67:0:0:65,67:2303,2349:-376.836,-189.995,-170.429,-186.852,0,-166.683	1/1:91:0,91,0:0:0:91,0:3243,0:-289.752,-27.3937,0,-289.752,-27.3937,-289.752	1/1:123:0,122,1:0:0:122,1:4348,21:-388.672,-36.7257,0,-387.085,-34.9274,-386.784	1/2:141:0,74,67:0:0:74,67:2636,2371:-406.726,-193.012,-170.736,-214.068,0,-193.899	1/2:60:0,35,25:0:0:35,25:1233,880:-171.708,-71.8513,-61.3153,-100.208,0,-92.6818	1/2:393:0,211,182:0:0:211,182:7459,6332:-1116.48,-513.054,-449.537,-603.779,0,-548.991	1/1:238:0,237,0:0:0:237,0:8379,0:-751.54,-71.3441,0,-751.54,-71.3441,-751.54	1/1:35:0,35,0:0:0:35,0:1238,0:-111.255,-10.5361,0,-111.255,-10.5361,-111.255	1/2:370:0,184,185:0:0:184,185:6490,6473:-1050.49,-525.153,-469.763,-525.333,0,-469.642	1/2:134:0,56,78:0:0:56,78:1984,2762:-385.176,-224.299,-207.441,-161.229,0,-137.749	1/2:186:0,94,92:0:0:94,92:3330,3212:-529.403,-260.289,-231.992,-269.464,0,-241.769	1/2:5:0,2,3:0:0:2,3:72,108:-15.0287,-9.17048,-8.56842,-6.21747,0,-5.31438	1/1:25:0,25,0:0:0:25,0:879,0:-79.0793,-7.52575,0,-79.0793,-7.52575,-79.0793	1/1:3:0,3,0:0:0:3,0:100,0:-9.31522,-0.90309,0,-9.31522,-0.90309,-9.31522	1/2:6:0,4,2:0:0:4,2:144,72:-17.9156,-6.22762,-5.0235,-12.047,0,-11.4449	1/2:11:0,3,8:0:0:3,8:104,284:-31.6285,-23.4745,-22.5714,-8.49485,0,-6.08661	1/2:182:0,86,96:0:0:86,96:3034,3386:-521.387,-275.872,-249.983,-245.866,0,-216.967	1/1:158:0,158,0:0:0:158,0:5571,0:-498.333,-47.5627,0,-498.333,-47.5627,-498.333	1/1:41:0,41,0:0:0:41,0:1454,0:-130.192,-12.3422,0,-130.192,-12.3422,-130.192	1/1:2:0,2,0:0:0:2,0:72,0:-6.8096,-0.60206,0,-6.8096,-0.60206,-6.8096	1/1:240:0,238,0:0:0:238,0:8463,0:-757.266,-71.6451,0,-757.266,-71.6451,-757.266	1/1:22:0,22,0:0:0:22,0:784,0:-70.4944,-6.62266,0,-70.4944,-6.62266,-70.4944	1/1:144:0,144,0:0:0:144,0:5080,0:-455.71,-43.3483,0,-455.71,-43.3483,-455.71	1/1:74:0,74,0:0:0:74,0:2635,0:-236.299,-22.2762,0,-236.299,-22.2762,-236.299	1/2:65:0,28,37:0:0:28,37:991,1309:-186.911,-106.901,-98.4722,-80.3615,0,-69.2234	1/2:95:0,57,38:0:0:57,38:2024,1290:-268.631,-104.608,-87.4489,-164.368,0,-152.929	1/1:132:0,132,0:0:0:132,0:4687,0:-419.059,-39.736,0,-419.059,-39.736,-419.059	1/1:178:0,178,0:0:0:178,0:6315,0:-565.292,-53.5833,0,-565.292,-53.5833,-565.292	1/1:133:0,133,0:0:0:133,0:4740,0:-425.116,-40.037,0,-425.116,-40.037,-425.116	1/2:144:0,69,75:0:0:69,75:2445,2669:-415.702,-217.34,-196.569,-198.716,0,-176.138	1/2:222:0,100,122:0:0:100,122:3553,4267:-634.053,-346.645,-316.542,-287.759,0,-251.033	1/2:5:0,2,3:0:0:2,3:72,108:-15.0252,-9.17208,-8.57002,-6.21226,0,-5.30917	1/2:94:0,49,45:0:0:49,45:1739,1573:-268.096,-127.601,-112.851,-140.845,0,-127.299	1/2:81:0,41,39:0:0:41,39:1472,1353:-228.559,-109.63,-97.2879,-118.92,0,-107.18	1/2:22:0,10,12:0:0:10,12:348,432:-63.3877,-35.3731,-32.3628,-28.3653,0,-24.7529	1/2:147:0,75,72:0:0:75,72:2680,2516:-421.026,-203.579,-181.002,-217.799,0,-196.125	1/1:94:0,94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chr12	23839466	.	C	T	163994	PASS	AB=0.469826;ABP=47.5652;AC=139;AF=0.747312;AN=186;AO=7664;CIGAR=1X;DP=10665;DPB=10665;DPRA=0;EPP=15881.1;EPPR=6191.33;GTI=0;LEN=1;MEANALT=1.05376;MQM=59.9973;MQMR=59.992;NS=93;NUMALT=1;ODDS=2.06076;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=274352;QR=106385;RO=2996;RPL=89;RPP=15881.1;RPPR=6191.33;RPR=7575;RUN=1;SAF=7664;SAP=16645.2;SAR=0;SRF=2996;SRP=6508.74;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:52:0,52:0:0:52:1868:-168.399,-15.6536,0	0/1:95:45,50:45:1585:50:1796:-133.324,0,-114.34	0/1:84:49,35:49:1751:35:1260:-88.419,0,-132.587	1/1:188:0,188:0:0:188:6720:-604.874,-56.5936,0	0/1:49:25,24:25:896:24:864:-63.3321,0,-66.2099	0/1:47:28,19:28:983:19:680:-47.3808,0,-74.6341	1/1:166:0,166:0:0:166:5952:-535.786,-49.971,0	0/1:162:93,69:93:3324:69:2476:-174.327,0,-250.612	0/1:219:119,100:119:4184:100:3580:-256.482,0,-310.772	1/1:117:0,117:0:0:117:4204:-378.539,-35.2205,0	0/1:82:38,44:38:1343:44:1568:-116.726,0,-96.4849	0/1:88:41,47:41:1464:47:1688:-125.716,0,-105.565	0/1:98:47,51:47:1664:51:1836:-136.02,0,-120.547	1/1:166:0,166:0:0:166:5943:-534.976,-49.971,0	1/1:72:0,72:0:0:72:2588:-233.168,-21.6742,0	0/1:64:32,32:32:1127:32:1148:-84.3639,0,-82.4715	1/1:104:0,104:0:0:104:3708:-333.921,-31.3071,0	1/1:84:0,84:0:0:84:2983:-268.701,-25.2865,0	1/1:66:0,66:0:0:66:2353:-212.028,-19.868,0	0/1:172:92,80:92:3267:80:2857:-205.59,0,-242.475	0/1:336:171,165:171:6052:165:5923:-432.03,0,-443.643	1/1:110:0,110:0:0:110:3931:-353.98,-33.1133,0	1/1:93:2,91:2:68:91:3268:-287.882,-21.5381,0	0/1:227:122,105:122:4330:105:3759:-270.175,0,-321.545	0/1:60:34,26:34:1203:26:932:-66.1371,0,-90.5132	0/1:297:189,107:189:6709:107:3842:-256.51,0,-514.427	1/1:153:0,153:0:0:153:5492:-494.405,-46.0576,0	1/1:45:0,45:0:0:45:1607:-144.919,-13.5464,0	0/1:237:135,102:135:4828:102:3652:-257.54,0,-363.331	0/1:126:57,69:57:2018:69:2472:-184.804,0,-143.962	0/1:136:83,53:83:2960:53:1900:-130.338,0,-225.694	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	0/1:7:4,3:4:131:3:108:-7.96796,0,-10.0063	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:304:132,172:132:4715:172:6129:-460.197,0,-332.997	1/1:210:0,210:0:0:210:7501:-675.134,-63.2163,0	1/1:98:0,98:0:0:98:3507:-315.84,-29.5009,0	.:.:.:.:.:.:.:.	1/1:138:0,138:0:0:138:4925:-443.4,-41.5421,0	1/1:34:1,33:1:36:33:1188:-103.63,-6.63675,0	1/1:126:1,125:1:36:125:4492:-400.849,-34.3315,0	1/1:128:0,128:0:0:128:4569:-411.374,-38.5318,0	0/1:63:31,32:31:1084:32:1148:-84.6649,0,-78.9012	0/1:198:102,96:102:3626:96:3452:-251.287,0,-266.942	1/1:107:0,107:0:0:107:3829:-344.805,-32.2102,0	1/1:151:0,151:0:0:151:5387:-484.96,-45.4555,0	1/1:102:0,102:0:0:102:3672:-330.681,-30.7051,0	0/1:124:64,60:64:2288:60:2123:-154.01,0,-168.854	0/1:204:102,101:102:3608:101:3628:-265.255,0,-263.458	0/1:10:7,3:7:244:3:108:-7.06487,0,-19.2891	0/1:97:50,47:50:1791:47:1671:-121.477,0,-132.272	0/1:52:29,23:29:1028:23:828:-59.1906,0,-77.1795	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/1:117:56,61:56:2000:61:2180:-161.246,0,-145.053	1/1:41:0,41:0:0:41:1464:-132.056,-12.3422,0	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.7356	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:152:1,150:1:36:150:5380:-480.806,-42.1422,0	0/1:234:119,115:119:4252:115:4136:-301.981,0,-312.419	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:182:0,182:0:0:182:6528:-587.601,-54.7875,0	1/1:228:1,227:1:36:227:8145:-729.463,-65.0366,0	1/1:86:2,84:2:72:84:3009:-264.204,-19.0519,0	0/1:68:39,29:39:1383:29:1021:-71.7158,0,-104.298	0/1:321:181,140:181:6403:140:5020:-355.315,0,-479.735	1/1:109:0,109:0:0:109:3897:-350.923,-32.8123,0	1/1:38:0,38:0:0:38:1368:-123.421,-11.4391,0	1/1:66:0,66:0:0:66:2372:-213.738,-19.868,0	0/1:99:51,47:51:1795:47:1688:-122.346,0,-131.968	0/1:22:14,8:14:492:8:288:-19.6447,0,-37.9897	1/1:117:0,117:0:0:117:4173:-375.753,-35.2205,0	1/1:71:0,71:0:0:71:2548:-229.57,-21.3731,0	0/1:315:180,134:180:6369:134:4792:-336.554,0,-478.422	1/1:130:0,130:0:0:130:4653:-418.931,-39.1339,0	1/1:71:0,71:0:0:71:2537:-228.58,-21.3731,0	0/1:107:60,47:60:2130:47:1680:-119.277,0,-159.757	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:87:0,87:0:0:87:3104:-279.588,-26.1896,0	0/1:88:45,43:45:1608:43:1544:-112.762,0,-118.519	1/1:136:0,136:0:0:136:4884:-439.711,-40.9401,0	1/1:119:0,119:0:0:119:4268:-384.297,-35.8226,0	0/1:85:34,51:34:1193:51:1832:-139.573,0,-82.0854	1/1:165:1,164:1:36:164:5868:-524.631,-46.0717,0	1/1:295:4,291:4:135:291:10400:-923.436,-76.3213,0	0/1:47:19,28:19:684:28:999:-76.0761,0,-47.7419	1/1:137:0,137:0:0:137:4880:-439.351,-41.2411,0	0/1:76:40,36:40:1432:36:1284:-92.9851,0,-106.299	0/1:45:31,14:31:1100:14:504:-32.1517,0,-85.7639	0/1:170:82,88:82:2936:88:3143:-231.92,0,-213.299	0/1:133:85,48:85:3014:48:1724:-115.408,0,-231.455	1/1:109:0,109:0:0:109:3864:-347.955,-32.8123,0	1/1:123:0,123:0:0:123:4396:-395.812,-37.0267,0
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chr12	23910485	.	A	C	21960.8	PASS	AB=0.470588;ABP=24.2141;AC=47;AF=0.252688;AN=186;AO=1346;CIGAR=1X;DP=6175;DPB=6175;DPRA=1.03039;EPP=2925.81;EPPR=3089.95;GTI=5;LEN=1;MEANALT=1;MQM=59.9629;MQMR=59.5612;NS=93;NUMALT=1;ODDS=0.0708634;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=48178;QR=171617;RO=4825;RPL=0;RPP=2925.81;RPPR=3099.39;RPR=1346;RUN=1;SAF=1346;SAP=2925.81;SAR=0;SRF=4823;SRP=10463;SRR=2;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:122:81,41:81:2868:41:1472:-96.0505,0,-221.381	0/1:109:82,27:82:2928:27:968:-54.6251,0,-230.851	0/0:139:139,0:139:4925:0:0:0,-41.8432,-443.372	0/1:34:8,26:8:288:26:920:-72.882,0,-16.0324	0/1:22:5,17:5:176:17:608:-48.4294,0,-9.56236	0/0:89:89,0:89:3149:0:0:0,-26.7917,-282.824	0/1:60:20,40:20:705:40:1440:-111.836,0,-45.711	0/1:48:27,21:27:956:21:748:-53.1959,0,-71.8487	0/0:90:90,0:90:3220:0:0:0,-27.0927,-289.351	0/1:71:27,44:27:951:44:1584:-121.478,0,-64.5223	0/1:91:37,54:37:1300:54:1928:-146.403,0,-89.8158	0/1:84:46,38:46:1656:38:1364:-97.7742,0,-123.8	0/0:59:59,0:59:2100:0:0:0,-17.7608,-189.256	0/0:70:69,1:69:2460:1:20:0,-19.0722,-219.607	0/1:56:21,35:21:752:35:1248:-95.7672,0,-51.144	0/0:62:62,0:62:2216:0:0:0,-18.6639,-199.569	0/0:53:53,0:53:1867:0:0:0,-15.9546,-168.095	0/0:66:66,0:66:2352:0:0:0,-19.868,-211.779	0/0:108:107,0:107:3828:0:0:0,-32.2102,-344.373	0/1:59:35,24:35:1252:24:844:-58.5182,0,-95.1967	0/0:43:43,0:43:1524:0:0:0,-12.9443,-137.389	0/0:36:36,0:36:1288:0:0:0,-10.8371,-116.221	0/1:90:57,33:57:2013:33:1184:-79.7689,0,-154.34	0/1:27:12,15:12:432:15:532:-40.0853,0,-31.0934	0/1:139:86,53:86:3060:53:1900:-129.435,0,-233.721	0/0:157:157,0:157:5561:0:0:0,-47.2617,-500.593	0/0:35:35,0:35:1240:0:0:0,-10.536,-111.9	0/1:133:92,41:92:3256:41:1476:-93.0992,0,-253.215	0/1:62:43,19:43:1536:19:680:-42.8653,0,-119.869	0/1:49:34,15:34:1216:15:532:-33.4626,0,-94.9098	1/1:8:0,8:0:0:8:288:-26.2447,-2.40824,0	0/0:5:5,0:5:165:0:0:0,-1.50515,-15.1736	0/0:2:2,0:2:68:0:0:0,-0.60206,-6.45771	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/1:168:94,74:94:3335:74:2656:-188.713,0,-249.727	0/0:68:68,0:68:2412:0:0:0,-20.47,-217.313	0/0:50:50,0:50:1760:0:0:0,-15.0515,-158.57	.:.:.:.:.:.:.:.	0/0:102:101,1:101:3585:1:25:0,-28.2185,-320.299	0/0:26:26,0:26:916:0:0:0,-7.82678,-82.7565	0/0:53:52,0:52:1833:0:0:0,-15.6536,-164.906	0/0:95:94,0:94:3352:0:0:0,-28.2968,-301.531	0/1:69:35,34:35:1241:34:1220:-89.3357,0,-91.2191	0/1:50:23,27:23:809:27:956:-71.3042,0,-58.075	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.291	0/0:87:85,2:85:3044:2:72:0,-19.3529,-267.346	0/0:119:119,0:119:4217:0:0:0,-35.8226,-379.684	0/1:79:46,33:46:1652:33:1184:-83.0869,0,-125.185	0/1:98:64,34:64:2277:34:1212:-79.8854,0,-175.686	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:122:49,73:49:1747:73:2608:-198.243,0,-120.692	0/1:26:23,3:23:824:3:108:-2.24839,0,-66.6565	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:92:56,36:56:1993:36:1296:-89.2492,0,-151.929	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2882	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7887	0/0:68:68,0:68:2424:0:0:0,-20.47,-218.254	0/1:104:57,47:57:2032:47:1680:-120.18,0,-151.84	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:190:190,0:190:6728:0:0:0,-57.1957,-605.56	0/0:96:96,0:96:3404:0:0:0,-28.8989,-306.567	0/0:47:47,0:47:1672:0:0:0,-14.1484,-150.721	0/1:35:18,17:18:632:17:612:-44.8774,0,-46.6674	0/1:69:40,29:40:1440:29:1040:-73.1433,0,-109.12	0/0:134:132,2:132:4720:2:72:0,-33.5013,-417.935	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:53:53,0:53:1896:0:0:0,-15.9546,-170.915	0/1:74:21,53:21:748:53:1904:-149.362,0,-45.3682	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:68:68,0:68:2404:0:0:0,-20.47,-216.568	0/0:93:93,0:93:3328:0:0:0,-27.9958,-299.607	0/1:66:33,33:33:1176:33:1184:-87.0003,0,-86.2706	0/0:154:154,0:154:5516:0:0:0,-46.3586,-496.542	0/0:17:17,0:17:600:0:0:0,-5.11751,-54.3246	0/1:57:35,22:35:1252:22:792:-54.447,0,-95.8193	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:54:54,0:54:1923:0:0:0,-16.2556,-173.342	0/1:53:26,27:26:920:27:964:-71.1222,0,-67.1518	0/0:113:113,0:113:4017:0:0:0,-34.0164,-361.699	0/0:90:90,0:90:3212:0:0:0,-27.0927,-289.262	0/1:75:31,44:31:1108:44:1580:-119.914,0,-77.4491	0/0:85:84,0:84:2982:0:0:0,-25.2865,-268.233	0/0:111:109,2:109:3867:2:72:0,-26.5776,-341.308	0/1:50:25,25:25:892:25:892:-65.5482,0,-64.6698	0/0:80:80,0:80:2868:0:0:0,-24.0824,-258.349	0/1:61:31,30:31:1112:30:1072:-78.4296,0,-81.9808	0/1:67:17,50:17:608:50:1796:-141.753,0,-34.2483	0/1:62:23,39:23:824:39:1404:-107.995,0,-55.8133	0/1:62:26,36:26:924:36:1296:-98.2801,0,-64.8068	0/0:89:89,0:89:3132:0:0:0,-26.7917,-282.068	0/0:97:96,1:96:3407:1:25:0,-26.7003,-304.341
chr12	23910512	.	T	C	62775.9	PASS	AB=0.413025;ABP=469.126;AC=47;AF=0.25;AN=188;AO=2948;CIGAR=1X;DP=16442;DPB=16442;DPRA=0.823761;EPP=36.1157;EPPR=29237.6;GTI=4;LEN=1;MEANALT=1.03636;MQM=59.9878;MQMR=59.8382;NS=94;NUMALT=1;ODDS=9.78216;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=104979;QR=476653;RO=13491;RPL=8;RPP=6335.21;RPPR=1998.47;RPR=2940;RUN=1;SAF=1376;SAP=31.3072;SAR=1572;SRF=4988;SRP=1991.67;SRR=8503;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:20:20,0:20:703:0:0:0,-6.0206,-63.5935	0/1:195:124,71:124:4426:71:2529:-169.16,0,-339.599	0/1:214:133,81:133:4709:81:2868:-193.936,0,-359.485	0/0:517:517,0:517:18326:0:0:0,-155.633,-1648.82	0/1:65:22,43:22:788:43:1544:-119.686,0,-51.6778	0/1:51:20,31:20:700:31:1097:-83.6855,0,-47.9709	0/0:305:305,0:305:10765:0:0:0,-91.8141,-968.772	0/1:177:83,94:83:2921:94:3355:-248.885,0,-209.844	0/1:100:60,40:60:2082:40:1432:-99.0746,0,-157.498	0/0:253:252,0:252:8872:0:0:0,-75.8596,-798.238	0/1:153:74,79:74:2596:79:2832:-209.061,0,-187.822	0/1:220:118,102:118:4176:102:3660:-263.376,0,-308.688	0/1:203:119,84:119:4229:84:2999:-209.032,0,-319.441	0/0:242:242,0:242:8521:0:0:0,-72.8493,-766.892	0/0:181:181,0:181:6403:0:0:0,-54.4864,-576.312	0/1:136:56,80:56:1991:80:2864:-217.057,0,-138.519	0/0:162:162,0:162:5735:0:0:0,-48.7669,-516.163	0/0:147:147,0:147:5194:0:0:0,-44.2514,-467.364	0/0:139:139,0:139:4954:0:0:0,-41.8432,-445.857	0/0:368:368,0:368:13004:0:0:0,-110.779,-1170.1	0/1:177:106,71:106:3706:71:2519:-173.68,0,-280.449	0/0:105:105,0:105:3734:0:0:0,-31.6081,-336.174	0/0:107:107,0:107:3794:0:0:0,-32.2102,-341.658	0/1:188:130,58:130:4618:58:2072:-130.152,0,-359.183	0/1:84:42,42:42:1473:42:1492:-109.288,0,-107.571	0/1:399:266,133:266:9427:133:4709:-303.863,0,-728.276	0/0:558:558,0:558:19670:0:0:0,-167.975,-1769.84	0/0:87:87,0:87:3108:0:0:0,-26.1896,-279.938	0/1:371:275,96:275:9724:96:3414:-195.79,0,-763.426	0/1:111:66,45:66:2324:45:1612:-111.956,0,-176.004	0/1:169:115,54:115:4081:54:1914:-121.662,0,-316.604	0/1:12:3,9:3:104:9:306:-24.2533,0,-6.09045	0/0:11:11,0:11:387:0:0:0,-3.31133,-35.1659	0/0:9:9,0:9:305:0:0:0,-2.70927,-27.7772	0/0:12:11,1:11:387:1:36:0,-0.0140849,-31.5677	0/1:8:1,7:1:32:7:252:-20.6207,0,-0.791073	0/1:500:281,219:281:9900:219:7760:-547.92,0,-740.379	0/0:181:181,0:181:6389:0:0:0,-54.4864,-575.058	0/0:180:180,0:180:6384:0:0:0,-54.1854,-574.635	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:221:221,0:221:7757:0:0:0,-66.5276,-697.974	0/0:69:69,0:69:2434:0:0:0,-20.7711,-219.311	0/0:130:130,0:130:4579:0:0:0,-39.1339,-412.271	0/0:272:272,0:272:9653:0:0:0,-81.8802,-868.724	0/1:161:89,72:89:3130:72:2541:-180.475,0,-233.461	0/1:135:77,58:77:2710:58:2042:-143.409,0,-203.505	0/0:111:110,1:110:3911:1:36:0,-29.8161,-348.584	0/0:245:243,2:243:8598:2:72:0,-66.9156,-766.983	0/0:236:236,0:236:8336:0:0:0,-71.0431,-750.227	0/1:226:162,64:162:5714:64:2296:-138.868,0,-446.349	0/1:229:157,70:157:5594:70:2497:-156.288,0,-434.888	0/1:12:6,6:6:212:6:216:-16.1782,0,-15.8124	0/1:214:89,125:89:3184:125:4464:-337.511,0,-222.268	0/1:54:49,5:49:1700:5:180:-0.296445,0,-137.026	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:233:156,77:156:5480:77:2723:-175.173,0,-423.187	0/0:67:67,0:67:2331:0:0:0,-20.169,-210.047	0/1:2:1,1:1:36:1:32:-2.59725,0,-2.99621	0/0:28:28,0:28:992:0:0:0,-8.42884,-89.5931	0/0:131:130,1:130:4590:1:36:0,-35.8418,-409.62	0/1:271:164,107:164:5792:107:3809:-261.428,0,-439.815	0/0:8:8,0:8:280:0:0:0,-2.40824,-25.5393	0/0:515:515,0:515:18227:0:0:0,-155.03,-1639.92	0/0:287:286,1:286:10142:1:36:0,-82.7973,-908.088	0/0:103:102,1:102:3627:1:36:0,-27.4129,-323.039	0/1:130:73,57:73:2586:57:2019:-142.846,0,-193.85	0/1:172:92,80:92:3249:80:2841:-204.15,0,-240.851	0/0:196:191,5:191:6754:5:180:0,-42.4498,-591.357	0/0:101:101,0:101:3565:0:0:0,-30.404,-321.06	0/0:86:86,0:86:3033:0:0:0,-25.8886,-273.199	0/1:187:86,101:86:3038:101:3598:-267.734,0,-217.355	0/1:21:14,7:14:496:7:248:-16.3426,0,-38.6526	0/0:251:251,0:251:8813:0:0:0,-75.5585,-793.153	0/0:155:155,0:155:5461:0:0:0,-46.6596,-491.44	0/1:212:143,69:143:5048:69:2459:-157.746,0,-390.644	0/0:377:376,1:376:13321:1:27:0,-110.789,-1195.98	0/0:72:72,0:72:2519:0:0:0,-21.6742,-226.887	0/1:145:104,41:104:3690:41:1460:-88.0467,0,-288.639	0/1:10:1,9:1:36:9:324:-26.4956,0,-0.587975	0/0:194:194,0:194:6801:0:0:0,-58.3998,-611.714	0/1:169:92,77:92:3233:77:2751:-196.958,0,-240.31	0/0:333:333,0:333:11719:0:0:0,-100.243,-1054.58	0/0:251:251,0:251:8873:0:0:0,-75.5585,-798.505	0/1:194:99,95:99:3508:95:3395:-247.365,0,-257.528	0/0:235:235,0:235:8329:0:0:0,-70.742,-749.604	0/0:278:275,3:275:9703:3:108:0,-73.6112,-863.094	0/1:105:59,46:59:2085:46:1648:-117,0,-155.11	0/0:218:218,0:218:7736:0:0:0,-65.6245,-696.274	0/1:176:101,75:101:3537:75:2696:-189.903,0,-265.514	0/1:155:79,76:79:2789:76:2728:-199.103,0,-204.587	0/1:163:101,62:101:3550:62:2191:-148.385,0,-270.636	0/1:179:70,109:70:2472:109:3880:-295.51,0,-168.841	0/0:352:352,0:352:12435:0:0:0,-105.963,-1118.98	0/0:240:240,0:240:8483:0:0:0,-72.2472,-763.473
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chr12	23911123	.	AAAA	TAAA	114381	PASS	AB=0.45551;ABP=58.0768;AC=141;AF=0.75;AN=188;AO=4281;CIGAR=1X3M;DP=6056;DPB=6056;DPRA=16.2688;EPP=15.1966;EPPR=3.13467;GTI=4;LEN=1;MEANALT=1.25806;MQM=59.9811;MQMR=59.9868;NS=94;NUMALT=1;ODDS=0.616346;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=152920;QR=60931;RO=1746;RPL=13;RPP=9186.51;RPPR=3708.04;RPR=4268;RUN=1;SAF=2231;SAP=19.6278;SAR=2050;SRF=876;SRP=3.05507;SRR=870;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:14:0,14:0:0:14:487:-44.151,-4.21442,0	0/1:24:10,14:10:360:14:500:-38.1115,0,-25.5196	0/1:54:31,23:31:1088:23:812:-57.1447,0,-81.9722	1/1:73:0,73:0:0:73:2590:-233.347,-21.9752,0	0/1:36:17,19:17:596:19:680:-50.6921,0,-43.1298	0/1:17:7,10:7:252:10:360:-27.6268,0,-17.9114	1/1:41:0,41:0:0:41:1472:-132.776,-12.3422,0	0/1:69:42,27:42:1440:27:968:-66.6663,0,-109.119	0/1:80:48,32:48:1667:32:1152:-79.9077,0,-126.232	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:99:38,57:38:1309:57:2044:-155.284,0,-89.1587	0/1:202:107,95:107:3752:95:3408:-246.126,0,-277.077	0/1:166:89,77:89:3111:77:2772:-199.748,0,-230.248	1/1:134:0,133:0:0:133:4763:-428.467,-40.037,0	1/1:131:1,129:1:25:129:4628:-414.142,-36.899,0	0/1:182:124,57:124:4277:57:2026:-127.765,0,-330.272	1/1:82:0,82:0:0:82:2914:-262.495,-24.6845,0	1/1:82:0,82:0:0:82:2907:-261.859,-24.6845,0	1/1:54:0,53:0:0:53:1900:-171.026,-15.9546,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0	0/1:77:41,36:41:1423:36:1296:-93.7646,0,-105.184	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:32:21,11:21:742:11:396:-26.3498,0,-57.4706	0/1:37:24,13:24:842:13:455:-30.1438,0,-64.9597	0/1:116:68,48:68:2410:48:1720:-120.166,0,-182.237	1/1:120:0,120:0:0:120:4304:-387.536,-36.1236,0	1/1:57:1,55:1:36:55:1968:-173.797,-13.6192,0	0/1:104:54,50:54:1895:50:1788:-129.895,0,-139.52	0/1:31:21,10:21:731:10:360:-23.4124,0,-56.7783	0/1:48:31,17:31:1070:17:608:-40.6026,0,-81.9655	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:4:3,1:3:101:1:36:-2.39415,0,-8.21925	0/1:5:3,1:3:102:1:36:-2.03433,0,-7.95742	0/1:296:147,147:147:5117:147:5260:-384.674,0,-371.821	1/1:32:0,32:0:0:32:1135:-102.458,-9.63296,0	1/1:74:1,73:1:32:73:2584:-229.609,-19.0769,0	0/0:4:4,0:4:138:0:0:0,-1.20412,-12.7602	1/1:63:0,62:0:0:62:2228:-200.424,-18.6639,0	1/1:41:0,41:0:0:41:1471:-132.686,-12.3422,0	1/1:67:0,67:0:0:67:2396:-215.897,-20.169,0	1/1:92:0,92:0:0:92:3277:-295.149,-27.6948,0	0/1:93:50,43:50:1746:43:1544:-111.257,0,-129.426	0/1:36:20,16:20:687:16:572:-40.9763,0,-51.3124	1/1:42:1,41:1:36:41:1472:-129.178,-9.04499,0	1/1:68:0,67:0:0:67:2389:-214.966,-20.169,0	1/1:28:0,28:0:0:28:1004:-90.6759,-8.42884,0	0/1:56:28,28:28:995:28:1004:-73.8182,0,-73.0071	0/1:48:23,25:23:796:25:896:-66.5109,0,-57.5067	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:30:14,16:14:503:16:567:-42.3298,0,-36.5768	0/1:21:10,11:10:350:11:396:-29.6611,0,-25.515	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:57:31,23:31:1098:23:812:-56.798,0,-82.5271	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:10:2,8:2:72:8:288:-23.2571,0,-3.82642	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:52:0,52:0:0:52:1842:-166.059,-15.6536,0	0/1:136:84,51:84:2920:51:1820:-123.082,0,-222.039	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:73:1,72:1:36:72:2542:-225.431,-18.3769,0	0/1:42:4,37:4:144:37:1332:-107.519,0,-0.643477	0/1:29:9,20:9:312:20:711:-55.5858,0,-19.6841	0/1:42:16,26:16:551:26:936:-71.9162,0,-37.27	1/1:63:2,61:2:72:61:2171:-188.811,-12.1282,0	1/1:56:0,56:0:0:56:2016:-181.713,-16.8577,0	1/1:23:1,22:1:36:22:792:-68.0074,-3.32542,0	0/1:79:39,40:39:1334:40:1431:-105.305,0,-96.5718	0/1:5:4,1:4:131:1:36:-2.09312,0,-10.6075	1/1:22:0,22:0:0:22:788:-71.2448,-6.62266,0	1/1:41:1,40:1:36:40:1421:-124.587,-8.74396,0	0/1:61:27,34:27:941:34:1216:-91.3837,0,-66.6399	1/1:61:0,61:0:0:61:2156:-194.305,-18.3628,0	1/1:43:1,42:1:29:42:1504:-132.71,-10.0446,0	0/1:73:44,28:44:1549:28:996:-68.0078,0,-117.755	0/1:7:4,3:4:138:3:108:-7.96796,0,-10.6526	1/1:54:1,53:1:36:53:1892:-166.96,-12.6573,0	0/1:48:24,24:24:842:24:856:-62.9117,0,-61.6481	1/1:81:0,80:0:0:80:2852:-256.638,-24.0824,0	1/1:69:1,68:1:36:68:2424:-214.818,-17.1728,0	0/1:155:82,72:82:2868:72:2559:-183.842,0,-211.642	1/1:89:0,87:0:0:87:3120:-280.676,-26.1896,0	1/1:228:3,224:3:108:224:7976:-707.817,-58.5361,0	0/1:27:15,12:15:522:12:432:-31.0934,0,-39.18	1/1:122:0,122:0:0:122:4336:-390.416,-36.7257,0	0/1:128:76,51:76:2689:51:1820:-125.638,0,-203.813	0/1:110:58,52:58:2047:52:1872:-135.646,0,-151.389	0/1:122:61,60:61:2135:60:2120:-154.282,0,-155.634	0/1:107:75,32:75:2584:32:1143:-70.9603,0,-200.599	1/1:32:0,30:0:0:30:1076:-96.8447,-9.0309,0	1/1:213:0,213:0:0:213:7627:-686.467,-64.1194,0
chr12	24008876	.	C	T	32646.5	PASS	AB=0.547099;ABP=70.1027;AC=48;AF=0.255319;AN=188;AO=1920;CIGAR=1X;DP=6838;DPB=6838;DPRA=1.31929;EPP=4172.24;EPPR=10678;GTI=1;LEN=1;MEANALT=1.0339;MQM=47.9964;MQMR=59.405;NS=94;NUMALT=1;ODDS=0.750173;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=68859;QR=175872;RO=4916;RPL=1920;RPP=4172.24;RPPR=10678;RPR=0;RUN=1;SAF=0;SAP=4172.24;SAR=1920;SRF=0;SRP=10678;SRR=4916;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.881	0/1:99:45,54:45:1601:54:1936:-142.057,0,-114.539	0/1:164:77,87:77:2760:87:3116:-227.943,0,-199.272	0/1:189:83,106:83:2965:106:3797:-283.024,0,-209.986	0/1:96:52,44:52:1860:44:1584:-112.984,0,-138.753	0/1:47:27,20:27:964:20:720:-50.4287,0,-72.9284	0/0:112:112,0:112:4000:0:0:0,-33.7154,-360.157	0/1:170:85,85:85:3035:85:3051:-220.363,0,-222.126	0/1:33:13,20:13:468:20:720:-54.5325,0,-32.5257	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.131	0/1:22:14,8:14:492:8:288:-19.3889,0,-37.9528	0/1:28:16,12:16:572:12:432:-30.4494,0,-43.3836	0/1:24:14,10:14:496:10:360:-24.9061,0,-37.7495	0/1:27:11,16:11:392:16:572:-43.4024,0,-27.3606	0/0:33:32,1:32:1148:1:36:0,-6.34751,-99.9242	0/1:25:13,12:13:468:12:432:-31.0525,0,-34.8638	0/0:74:74,0:74:2647:0:0:0,-22.2762,-238.394	0/0:24:24,0:24:851:0:0:0,-7.22472,-76.9013	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0459	0/0:131:130,1:130:4664:1:36:0,-35.8484,-415.715	0/1:60:26,34:26:936:34:1205:-89.9415,0,-66.4624	0/0:113:113,0:113:4030:0:0:0,-34.0164,-362.84	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.888	0/1:70:33,37:33:1180:37:1324:-97.3617,0,-85.4137	0/1:50:21,29:21:756:29:1044:-76.9252,0,-53.2804	0/1:304:123,180:123:4389:180:6453:-484.882,0,-303.373	0/0:92:92,0:92:3261:0:0:0,-27.6948,-293.617	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:189:73,116:73:2620:116:4156:-314.925,0,-179.133	0/1:133:56,77:56:2012:77:2772:-208.016,0,-141.271	0/1:100:36,63:36:1284:63:2245:-170.181,0,-85.6814	0/1:15:9,6:9:320:6:216:-15.1678,0,-24.3968	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.852	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:16:11,5:11:396:5:176:-11.241,0,-31.1294	0/1:5:4,1:4:144:1:36:-2.06166,0,-11.8085	0/1:85:41,44:41:1464:44:1580:-115.572,0,-106.426	0/0:128:128,0:128:4580:0:0:0,-38.5318,-412.061	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7874	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.002	0/0:21:21,0:21:747:0:0:0,-6.32163,-67.5426	0/0:125:125,0:125:4469:0:0:0,-37.6287,-401.998	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2236	0/1:25:13,12:13:468:12:432:-31.4645,0,-34.8471	0/1:105:61,44:61:2172:44:1584:-110.458,0,-164.118	0/0:76:76,0:76:2720:0:0:0,-22.8783,-244.832	0/0:160:159,1:159:5708:1:36:0,-44.586,-510.075	0/0:113:113,0:113:4056:0:0:0,-34.0164,-365.197	0/1:94:41,53:41:1460:53:1893:-141.005,0,-103.291	0/1:141:64,77:64:2300:77:2761:-204.647,0,-164.784	0/1:8:6,2:6:216:2:72:-4.39142,0,-17.3823	0/1:135:50,85:50:1792:85:3060:-231.568,0,-120.921	0/1:38:14,24:14:504:24:860:-65.8584,0,-34.259	0/1:19:9,10:9:324:10:356:-26.3923,0,-23.5943	0/1:83:45,38:45:1608:38:1364:-97.1641,0,-120.023	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.003	0/1:12:10,2:10:360:2:72:-3.1873,0,-29.1319	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:71:71,0:71:2552:0:0:0,-21.3731,-229.878	0/1:65:17,48:17:612:48:1728:-135.265,0,-35.8395	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:159:158,1:158:5660:1:36:0,-44.2773,-505.833	0/0:143:142,1:142:5035:1:36:0,-39.4685,-449.614	0/0:52:49,3:49:1714:3:108:0,-5.63301,-144.361	0/1:93:53,40:53:1900:40:1413:-98.8045,0,-143.224	0/1:202:85,117:85:3048:117:4204:-314.958,0,-213.695	0/0:95:93,2:93:3321:2:72:0,-21.7982,-292.094	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:76:76,0:76:2720:0:0:0,-22.8783,-244.979	0/1:44:19,25:19:680:25:896:-67.0714,0,-48.1742	0/1:14:4,10:4:144:10:356:-27.9999,0,-9.0992	0/0:104:104,0:104:3728:0:0:0,-31.3071,-335.652	0/0:62:62,0:62:2211:0:0:0,-18.6639,-199.087	0/1:99:43,56:43:1528:56:2005:-149.843,0,-107.989	0/0:136:135,1:135:4836:1:36:0,-37.3613,-431.648	0/0:251:251,0:251:9004:0:0:0,-75.5585,-810.092	0/1:70:29,41:29:1040:41:1476:-110.464,0,-72.7488	0/1:20:11,9:11:396:9:324:-23.2273,0,-29.9588	0/0:88:87,1:87:3101:1:36:0,-22.9119,-275.704	0/1:113:55,58:55:1968:58:2088:-152.207,0,-143.233	0/0:191:189,2:189:6760:2:72:0,-50.6971,-601.53	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.961	0/1:19:6,13:6:216:13:468:-36.5169,0,-14.0709	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.178	0/0:47:46,1:46:1656:1:36:0,-10.5696,-145.721	0/1:27:16,11:16:568:11:396:-27.5124,0,-43.3064	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7399	0/1:34:11,23:11:388:23:828:-63.3052,0,-25.0223	0/1:18:13,5:13:468:5:176:-10.6874,0,-37.0234	0/1:27:13,14:13:451:14:500:-36.9842,0,-32.7804	0/1:26:4,22:4:144:22:792:-63.1163,0,-5.47593	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.365	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.879
chr12	24017163	.	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chr12	24017186	.	ATCGACTTATA	GTCCACGTATA,ATCGACGTATA	148569	PASS	AB=0.526523,0.462532;ABP=24.7805,46.4574;AC=141,47;AF=0.75,0.25;AN=188;AO=5450,1663;CIGAR=1X2M1X2M1X4M,6M1X4M;DP=7231;DPB=7231.18;DPRA=0,1.04648;EPP=11630,3605.49;EPPR=7.35324;GTI=1;LEN=11,1;MEANALT=2.58511,2.81481;MQM=54.0393,59.979;MQMR=60;NS=94;NUMALT=2;ODDS=0.540547;PAIRED=0,0;PAIREDR=0;PAO=0.666667,0;PQA=24,0;PQR=0;PRO=0;QA=189000,59326;QR=71;RO=2;RPL=5426,1662;RPP=11630,3605.49;RPPR=7.35324;RPR=24,1;RUN=1,1;SAF=5450,1663;SAP=11837.5,3614.17;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:57:0,55,0:0:0:55,0:1905,0:-170.556,-16.5567,0,-170.556,-16.5567,-170.556	1/2:122:0,55,64:0:0:55,64:1921,2283:-341.868,-186.176,-169.619,-155.753,0,-136.487	1/2:88:0,47,41:0:0:47,41:1615,1464:-250.54,-119.714,-105.565,-131.177,0,-118.834	1/2:141:0,87,53:0:0:87,53:3021,1908:-400.798,-155.683,-129.494,-245.11,0,-229.155	1/2:50:0,25,24:0:0:25,24:884,860:-141.737,-70.1374,-62.6116,-71.5952,0,-64.3705	1/2:17:0,7,10:0:0:7,10:242,352:-48.6102,-29.0079,-26.9007,-19.9499,0,-16.9396	1/1:105:0,103,0:0:0:103,0:3588,0:-322.409,-31.0061,0,-322.409,-31.0061,-322.409	1/2:124:0,65,53:0:0:65,53:2264,1908:-338.682,-155.764,-136.197,-182.991,0,-167.036	1/2:56:0,31,25:0:0:31,25:1082,892:-160.384,-73.0739,-63.742,-87.6623,0,-80.1366	1/1:96:0,96,0:0:0:96,0:3335,0:-300.062,-28.8989,0,-300.062,-28.8989,-300.062	1/2:35:0,21,14:0:0:21,14:719,504:-99.7334,-41.4837,-35.162,-58.6023,0,-54.3879	1/2:65:0,31,34:0:0:31,34:1076,1192:-184.557,-97.2961,-87.9642,-87.5587,0,-77.3237	1/2:47:0,24,23:0:0:24,23:838,820:-135.018,-67.1988,-59.9741,-68.1712,0,-61.2475	1/2:39:0,19,20:0:0:19,20:665,711:-112.308,-58.295,-52.5755,-54.3653,0,-48.3447	1/1:28:0,28,0:0:0:28,0:982,0:-88.5657,-8.42884,0,-88.5657,-8.42884,-88.5657	1/2:43:0,23,20:0:0:23,20:801,716:-123.728,-58.7471,-51.8234,-65.3336,0,-59.313	1/1:16:0,16,0:0:0:16,0:553,0:-49.994,-4.81648,0,-49.994,-4.81648,-49.994	1/1:18:0,17,0:0:0:17,0:593,0:-53.264,-5.11751,0,-53.264,-5.11751,-53.264	1/1:31:0,26,0:0:0:26,0:892,0:-79.9285,-7.82678,0,-79.9285,-7.82678,-79.9285	1/1:150:0,145,0:0:0:145,0:5028,0:-451.362,-43.6494,0,-451.362,-43.6494,-451.362	1/2:111:0,72,38:0:0:72,38:2506,1364:-314.499,-111.262,-89.5876,-203.233,0,-191.793	1/1:90:0,88,0:0:0:88,0:3027,0:-271.81,-26.4906,0,-271.81,-26.4906,-271.81	1/1:203:0,199,0:0:0:199,0:6880,0:-617.763,-59.905,0,-617.763,-59.905,-617.763	1/2:52:0,33,19:0:0:33,19:1137,680:-147.707,-55.8096,-45.8756,-92.2494,0,-86.5298	1/2:81:0,38,42:0:0:38,42:1314,1496:-228.586,-121.971,-110.532,-106.644,0,-94.0011	1/2:188:0,97,87:0:0:97,87:3350,3108:-525.284,-253.359,-224.159,-271.933,0,-245.744	1/1:158:0,154,0:0:0:154,0:5330,0:-478.138,-46.3586,0,-478.138,-46.3586,-478.138	1/1:10:0,10,0:0:0:10,0:352,0:-31.9787,-3.0103,0,-31.9787,-3.0103,-31.9787	1/2:190:0,91,98:0:0:91,98:3172,3503:-543.314,-285.638,-258.244,-257.688,0,-228.187	1/2:119:0,75,44:0:0:75,44:2616,1580:-341.534,-129.246,-106.669,-212.643,0,-199.397	1/2:116:0,59,57:0:0:59,57:2049,2044:-333.357,-167.073,-149.312,-166.637,0,-149.478	1/2:6:0,2,4:0:0:2,4:72,144:-17.975,-12.1095,-11.5074,-6.22497,0,-5.02085	1/1:26:0,25,0:0:0:25,0:871,0:-78.3104,-7.52575,0,-78.3104,-7.52575,-78.3104	1/1:9:0,9,0:0:0:9,0:310,0:-28.1783,-2.70927,0,-28.1783,-2.70927,-28.1783	1/2:15:0,10,5:0:0:10,5:346,176:-42.7289,-14.6799,-11.6696,-28.3987,0,-26.8935	1/2:16:0,8,8:0:0:8,8:278,288:-46.3768,-23.8592,-21.4509,-22.8707,0,-20.4624	1/2:132:0,63,69:0:0:63,69:2191,2450:-377.895,-199.981,-181.016,-178.265,0,-157.494	1/1:164:0,162,0:0:0:162,0:5586,0:-501.034,-48.7669,0,-501.034,-48.7669,-501.034	1/1:25:0,25,0:0:0:25,0:855,0:-76.8427,-7.52575,0,-76.8427,-7.52575,-76.8427	1/1:4:0,4,0:0:0:4,0:141,0:-13.0185,-1.20412,0,-13.0185,-1.20412,-13.0185	1/1:105:0,102,0:0:0:102,0:3531,0:-316.664,-30.7051,0,-316.664,-30.7051,-316.664	1/1:30:0,28,2:0:0:28,2:965,72:-86.4514,-8.42884,0,-80.5755,-2.19418,-79.9734	1/1:157:0,153,0:0:0:153,0:5295,0:-475.092,-46.0576,0,-475.092,-46.0576,-475.092	1/1:22:0,22,0:0:0:22,0:754,0:-68.1167,-6.62266,0,-68.1167,-6.62266,-68.1167	1/2:29:0,9,20:0:0:9,20:317,697:-82.8211,-57.0301,-54.3208,-26.1418,0,-20.1212	1/2:95:0,51,43:0:0:51,43:1765,1536:-268.388,-125.366,-110.013,-143.15,0,-130.206	1/1:113:0,113,0:0:0:113,0:3941,0:-354.067,-34.0164,0,-354.067,-34.0164,-354.067	1/1:142:0,138,0:0:0:138,0:4786,0:-429.906,-41.5421,0,-429.906,-41.5421,-429.906	1/1:56:0,54,2:0:0:54,2:1866,72:-167.594,-16.2556,0,-161.719,-10.021,-161.117	1/2:119:0,65,54:0:0:65,54:2254,1924:-340.229,-157.181,-137.614,-183.399,0,-167.144	1/2:156:0,69,85:0:0:69,85:2390,3027:-440.856,-246.733,-225.962,-194.133,0,-168.546	1/2:8:0,5,2:0:0:5,2:178,72:-20.3984,-5.96175,-4.4566,-14.5169,0,-13.9148	1/2:78:1,43,33:1:35:43,33:1477,1184:-212.239,-93.7818,-83.685,-115.956,0,-108.87	1/2:62:0,36,26:0:0:36,26:1253,928:-177.822,-76.0115,-65.1744,-102.163,0,-94.3365	1/2:32:0,18,14:0:0:18,14:624,504:-91.9182,-41.4837,-36.0651,-50.7878,0,-46.5734	1/2:156:0,80,74:0:0:80,74:2808,2643:-443.629,-215.534,-191.451,-228.142,0,-205.866	1/1:5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chr12	24017214	.	T	C	26444.6	PASS	AB=0.472167;ABP=26.5816;AC=47;AF=0.25;AN=188;AO=1668;CIGAR=1X;DP=7079;DPB=7079;DPRA=1.05936;EPP=3625.03;EPPR=11752.8;GTI=0;LEN=1;MEANALT=1;MQM=59.9388;MQMR=53.9856;NS=94;NUMALT=1;ODDS=0.861448;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=58834;QR=192733;RO=5411;RPL=1668;RPP=3625.03;RPPR=11752.8;RPR=0;RUN=1;SAF=1668;SAP=3625.03;SAR=0;SRF=5411;SRP=11752.8;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:55,0:55:1946:0:0:0,-16.5566,-172.895	0/1:123:58,65:58:2056:65:2298:-170.054,0,-147.621	0/1:87:46,41:46:1631:41:1438:-103.522,0,-120.504	0/1:133:84,49:84:2988:49:1725:-115.495,0,-228.611	0/1:50:25,25:25:881:25:890:-65.3676,0,-64.2315	0/1:16:7,9:7:252:9:324:-24.6894,0,-18.1174	0/0:104:104,0:104:3707:0:0:0,-31.3071,-333.112	0/1:125:69,56:69:2463:56:1977:-140.562,0,-181.43	0/1:57:31,26:31:1108:26:908:-64.8738,0,-82.0824	0/0:95:95,0:95:3408:0:0:0,-28.5978,-306.53	0/1:35:21,14:21:747:14:491:-33.9851,0,-56.8846	0/1:67:31,36:31:1107:36:1253:-92.9021,0,-79.5194	0/1:46:23,23:23:828:23:816:-59.9143,0,-60.6206	0/1:39:19,20:19:684:20:698:-51.4013,0,-50.041	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.1647	0/1:41:23,18:23:820:18:632:-44.8645,0,-61.5436	0/0:16:16,0:16:567:0:0:0,-4.81648,-51.2367	0/0:18:18,0:18:644:0:0:0,-5.41854,-57.9655	0/0:31:31,0:31:1098:0:0:0,-9.33193,-97.7678	0/0:147:147,0:147:5230:0:0:0,-44.2514,-469.27	0/1:109:69,40:69:2465:40:1414:-94.7389,0,-188.606	0/0:89:89,0:89:3156:0:0:0,-26.7917,-283.907	0/0:195:195,0:195:6979:0:0:0,-58.7008,-626.892	0/1:51:32,19:32:1136:19:663:-44.6409,0,-86.6238	0/1:79:38,41:38:1340:41:1455:-107.464,0,-96.8104	0/1:187:95,92:95:3374:92:3242:-235.645,0,-247.359	0/0:154:154,0:154:5493:0:0:0,-46.3586,-492.448	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3376	0/1:187:88,99:88:3142:99:3491:-258.108,0,-226.372	0/1:115:73,42:73:2620:42:1485:-99.3251,0,-200.919	0/1:113:55,58:55:1950:58:2029:-148.863,0,-141.431	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.02085	0/0:25:25,0:25:873:0:0:0,-7.52575,-78.641	0/0:9:9,0:9:309:0:0:0,-2.70927,-28.0745	0/1:14:9,5:9:316:5:176:-11.9706,0,-24.5001	0/1:15:7,8:7:248:8:288:-21.752,0,-18.0958	0/1:130:63,67:63:2256:67:2352:-172.805,0,-163.879	0/0:157:157,0:157:5592:0:0:0,-47.2617,-501.571	0/0:25:25,0:25:900:0:0:0,-7.52575,-80.185	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9271	0/0:101:101,0:101:3553:0:0:0,-30.404,-318.495	0/0:30:30,0:30:1076:0:0:0,-9.0309,-96.7511	0/0:153:153,0:153:5442:0:0:0,-46.0576,-487.986	0/0:22:22,0:22:784:0:0:0,-6.62266,-70.8028	0/1:29:9,20:9:324:20:689:-53.5984,0,-20.7547	0/1:93:49,44:49:1737:44:1553:-112.064,0,-128.426	0/0:111:111,0:111:3958:0:0:0,-33.4143,-355.476	0/0:141:141,0:141:5028:0:0:0,-42.4452,-451.083	0/0:53:51,2:51:1817:2:72:0,-9.11787,-156.453	0/1:119:66,53:66:2346:53:1891:-134.645,0,-175.334	0/1:155:70,85:70:2484:85:2989:-222.581,0,-177.001	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.1975	0/1:76:43,33:43:1544:33:1172:-82.9092,0,-114.052	0/1:61:35,26:35:1248:26:912:-64.033,0,-94.1767	0/1:33:18,15:18:639:15:536:-38.6408,0,-47.5646	0/1:154:79,75:79:2800:75:2666:-193.826,0,-205.387	0/0:53:53,0:53:1895:0:0:0,-15.9546,-170.651	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.488	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.73	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.063	0/1:76:40,36:40:1432:36:1269:-91.6234,0,-106.164	0/0:24:24,0:24:864:0:0:0,-7.22472,-77.9933	0/0:134:134,0:134:4783:0:0:0,-40.338,-430.277	0/0:154:151,3:151:5372:3:108:0,-36.2834,-471.698	0/0:98:93,5:93:3274:5:166:0,-14.2344,-278.023	0/1:114:62,52:62:2205:52:1847:-132.192,0,-163.707	0/1:117:71,46:71:2525:46:1643:-112.937,0,-191.967	0/0:142:141,1:141:5014:1:36:0,-39.148,-447.317	0/0:17:17,0:17:608:0:0:0,-5.11751,-53.9486	0/0:49:49,0:49:1734:0:0:0,-14.7505,-155.497	0/1:44:20,24:20:716:24:819:-60.7755,0,-51.5023	0/1:29:17,12:17:604:12:420:-29.4042,0,-45.919	0/0:111:111,0:111:3923:0:0:0,-33.4143,-352.11	0/0:78:78,0:78:2784:0:0:0,-23.4803,-249.666	0/1:115:50,65:50:1784:65:2288:-171.557,0,-125.311	0/0:107:107,0:107:3808:0:0:0,-32.2102,-342.194	0/0:86:85,1:85:3026:1:36:0,-22.2903,-266.538	0/1:61:34,27:34:1220:27:951:-67.5407,0,-91.2219	0/1:25:20,5:20:711:5:176:-8.65927,0,-56.577	0/0:133:133,0:133:4761:0:0:0,-40.037,-427.051	0/1:115:72,43:72:2548:43:1527:-103.104,0,-193.646	0/0:170:170,0:170:6100:0:0:0,-51.1751,-546.983	0/0:45:45,0:45:1603:0:0:0,-13.5463,-144.275	0/1:37:23,14:23:824:14:504:-34.56,0,-63.1027	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.2866	0/0:88:87,1:87:3103:1:36:0,-22.8924,-275.512	0/1:8:5,3:5:176:3:108:-7.66693,0,-13.4732	0/0:42:41,1:41:1464:1:32:0,-9.54053,-127.767	0/1:39:20,19:20:712:19:665:-48.4326,0,-52.0017	0/1:33:22,11:22:788:11:392:-25.6861,0,-61.1868	0/1:90:34,56:34:1220:56:1986:-151.92,0,-82.7923	0/1:47:16,31:16:576:31:1084:-83.7177,0,-37.7317	0/0:90:90,0:90:3184:0:0:0,-27.0927,-285.939	0/0:43:43,0:43:1531:0:0:0,-12.9443,-137.661
chr12	24052774	.	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chr12	24096434	.	A	C,T	90452.7	PASS	AB=0.424184,0.575816;ABP=133.069,133.069;AC=140,48;AF=0.744681,0.255319;AN=188;AO=3084,1519;CIGAR=1X,1X;DP=4605;DPB=4605;DPRA=49.5054,1.55095;EPP=6682.47,3284.13;EPPR=7.35324;GTI=6;LEN=1,1;MEANALT=1.52688,1.98;MQM=40.0785,40.1771;MQMR=56;NS=94;NUMALT=2;ODDS=0.00540694;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=109301,54196;QR=72;RO=2;RPL=3082,1517;RPP=6682.47,3284.13;RPPR=7.35324;RPR=2,2;RUN=1,1;SAF=3084,1519;SAP=6699.83,3301.48;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:19:0,19,0:0:0:19,0:665,0:-55.3611,-5.71957,0,-55.3611,-5.71957,-55.3611	1/2:61:0,28,33:0:0:28,33:1004,1184:-164.301,-89.7797,-81.3509,-74.8529,0,-64.9189	1/2:44:0,22,22:0:0:22,22:782,792:-118.339,-60.0408,-53.4181,-58.63,0,-52.0073	1/2:105:0,36,69:0:0:36,69:1288,2466:-296.178,-195.039,-184.202,-101.485,0,-80.7137	2/2:13:0,1,12:0:0:1,12:36,432:-37.2478,-34.4397,-34.1387,-3.61236,-0.458899,0	1/2:37:0,12,25:0:0:12,25:420,896:-100.541,-68.7765,-65.1641,-32.0958,0,-24.5701	1/1:48:0,48,0:0:0:48,0:1703,0:-148.77,-14.4494,0,-148.77,-14.4494,-148.77	1/2:104:0,26,78:0:0:26,78:928,2782:-278.356,-208.338,-200.511,-70.3503,0,-46.87	1/2:61:0,27,34:0:0:27,34:960,1211:-164.516,-91.8303,-83.7025,-73.0182,0,-62.7832	1/1:59:0,59,0:0:0:59,0:2092,0:-183.28,-17.7608,0,-183.28,-17.7608,-183.28	1/2:47:0,28,19:0:0:28,19:995,684:-129.128,-53.4864,-45.0576,-75.9815,0,-70.2619	1/2:84:0,37,47:0:0:37,47:1284,1666:-220.482,-125.151,-114.013,-95.6544,0,-81.506	1/2:80:0,30,50:0:0:30,50:1076,1779:-215.233,-133.052,-124.021,-82.5157,0,-67.4642	1/2:37:0,14,23:0:0:14,23:485,824:-101.731,-63.9922,-59.7778,-38.0745,0,-31.1508	1/1:58:1,57,0:1:36:57,0:2013,0:-170.289,-13.8615,0,-170.59,-17.1587,-173.528	1/2:44:0,17,27:0:0:17,27:591,953:-120.327,-74.6451,-69.5276,-46.017,0,-37.8892	1/1:26:0,26,0:0:0:26,0:936,0:-77.361,-7.82678,0,-77.361,-7.82678,-77.361	1/1:30:1,29,0:1:36:29,0:1040,0:-83.7216,-5.44167,0,-84.0227,-8.72987,-86.9528	1/1:23:0,23,0:0:0:23,0:819,0:-68.4385,-6.92369,0,-68.4385,-6.92369,-68.4385	1/1:26:0,26,0:0:0:26,0:909,0:-80.0892,-7.82678,0,-80.0892,-7.82678,-80.0892	1/2:121:0,67,54:0:0:67,54:2365,1924:-329.654,-148.52,-128.351,-181.471,0,-165.215	1/1:16:0,16,0:0:0:16,0:567,0:-50.5083,-4.81648,0,-50.5083,-4.81648,-50.5083	1/1:48:0,48,0:0:0:48,0:1719,0:-149.246,-14.4494,0,-149.246,-14.4494,-149.246	1/2:20:0,7,13:0:0:7,13:248,464:-55.3696,-36.4999,-34.3927,-19.206,0,-15.2926	1/2:36:0,8,28:0:0:8,28:280,1004:-98.4114,-76.955,-74.5468,-21.7892,0,-13.3604	1/2:204:0,73,131:0:0:73,131:2572,4688:-575.417,-371.931,-349.956,-203.831,0,-164.396	1/1:138:0,137,1:0:0:137,1:4866,36:-417.111,-41.2411,0,-414.303,-38.0876,-414.002	1/1:21:0,21,0:0:0:21,0:748,0:-64.8708,-6.32163,0,-64.8708,-6.32163,-64.8708	1/2:132:0,50,82:0:0:50,82:1762,2943:-374.406,-234.418,-219.367,-140.335,0,-115.65	1/2:85:0,29,56:0:0:29,56:1040,2008:-232.273,-152.769,-144.04,-79.8404,0,-62.9827	1/2:76:0,24,52:0:0:24,52:856,1827:-211.797,-144.522,-137.297,-67.6192,0,-51.9657	2/2:1:0,0,1:0:0:0,1:0,36:-3.45449,-3.45449,-3.45449,-0.30103,-0.30103,0	1/1:5:0,5,0:0:0:5,0:176,0:-15.5978,-1.50515,0,-15.5978,-1.50515,-15.5978	1/1:2:0,2,0:0:0:2,0:72,0:-6.43644,-0.60206,0,-6.43644,-0.60206,-6.43644	1/1:5:0,5,0:0:0:5,0:180,0:-14.386,-1.50515,0,-14.386,-1.50515,-14.386	1/2:6:0,2,4:0:0:2,4:72,144:-16.7444,-11.33,-10.7279,-5.75023,0,-4.54611	1/2:145:0,68,77:0:0:68,77:2436,2731:-411.13,-216.901,-196.431,-194.578,0,-171.399	1/1:41:0,41,0:0:0:41,0:1437,0:-122.141,-12.3422,0,-122.141,-12.3422,-122.141	1/1:41:0,41,0:0:0:41,0:1420,0:-121.187,-12.3422,0,-121.187,-12.3422,-121.187	1/1:1:0,1,0:0:0:1,0:36,0:-3.45449,-0.30103,0,-3.45449,-0.30103,-3.45449	1/1:29:0,29,0:0:0:29,0:1032,0:-87.912,-8.72987,0,-87.912,-8.72987,-87.912	1/1:13:0,13,0:0:0:13,0:464,0:-40.474,-3.91339,0,-40.474,-3.91339,-40.474	1/1:30:0,30,0:0:0:30,0:1056,0:-91.182,-9.0309,0,-91.182,-9.0309,-91.182	1/1:64:0,64,0:0:0:64,0:2278,0:-198.557,-19.2659,0,-198.557,-19.2659,-198.557	1/2:44:0,19,25:0:0:19,25:648,896:-122.074,-70.8319,-65.1123,-51.5807,0,-44.0549	1/2:71:0,32,39:0:0:32,39:1140,1400:-202.512,-112.36,-102.728,-90.5003,0,-78.7602	1/1:44:0,44,0:0:0:44,0:1568,0:-130.494,-13.2453,0,-130.494,-13.2453,-130.494	1/1:47:0,47,0:0:0:47,0:1665,0:-143.496,-14.1484,0,-143.496,-14.1484,-143.496	1/1:27:0,27,0:0:0:27,0:949,0:-82.3815,-8.12781,0,-82.3815,-8.12781,-82.3815	1/2:57:0,33,24:0:0:33,24:1166,860:-160.006,-68.4292,-58.4952,-91.9223,0,-84.6976	1/2:15:0,8,7:0:0:8,7:288,248:-42.8104,-20.1924,-17.7841,-22.966,0,-20.8588	1/2:10:0,2,8:0:0:2,8:72,284:-26.9071,-21.8514,-21.2494,-5.37379,0,-2.96555	1/2:35:0,20,15:0:0:20,15:711,536:-95.0161,-40.707,-34.6864,-54.6427,0,-50.1272	1/2:33:0,9,24:0:0:9,24:294,839:-88.6872,-65.4465,-62.7372,-23.5651,0,-16.3404	1/1:3:0,3,0:0:0:3,0:108,0:-9.48528,-0.90309,0,-9.48528,-0.90309,-9.48528	1/2:51:0,13,38:0:0:13,38:460,1352:-139.642,-104.358,-100.445,-35.6197,0,-24.1806	1/1:7:0,7,0:0:0:7,0:248,0:-22.1027,-2.10721,0,-22.1027,-2.10721,-22.1027	1/2:15:0,6,9:0:0:6,9:216,324:-42.6722,-25.4094,-23.6032,-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chr12	24102175	.	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chr12	24167089	.	G	A	18845.6	PASS	AB=0.519105;ABP=9.81411;AC=50;AF=0.268817;AN=186;AO=1133;CIGAR=1X;DP=4319;DPB=4319;DPRA=0.994452;EPP=2463.29;EPPR=6897.45;GTI=2;LEN=1;MEANALT=1.01923;MQM=59.7908;MQMR=59.9353;NS=93;NUMALT=1;ODDS=0.695819;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=40478;QR=114026;RO=3183;RPL=1133;RPP=2463.29;RPPR=6897.45;RPR=0;RUN=1;SAF=0;SAP=2463.29;SAR=1133;SRF=0;SRP=6914.81;SRR=3183;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:39:24,15:24:864:15:536:-36.8323,0,-66.3424	0/1:59:32,27:32:1152:27:968:-69.6566,0,-86.2294	0/1:133:71,62:71:2544:62:2228:-160.746,0,-189.174	0/1:11:5,6:5:180:6:216:-16.4792,0,-13.2407	0/1:22:13,9:13:468:9:324:-22.8832,0,-35.837	0/0:46:46,0:46:1643:0:0:0,-13.8474,-148.122	0/1:41:27,14:27:972:14:496:-32.6297,0,-75.4557	0/1:31:15,16:15:540:16:572:-42.4815,0,-39.6046	0/0:49:49,0:49:1747:0:0:0,-14.7505,-157.514	0/1:20:12,8:12:432:8:288:-20.2468,0,-33.2006	0/1:51:22,29:22:788:29:1036:-78.2014,0,-55.8923	0/1:44:18,26:18:648:26:932:-70.9512,0,-45.4066	0/1:53:24,29:24:860:29:1044:-78.3171,0,-61.7672	0/0:52:52,0:52:1872:0:0:0,-15.6536,-168.759	0/1:34:25,9:25:900:9:311:-18.0887,0,-71.0851	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:96:96,0:96:3448:0:0:0,-28.8989,-310.412	0/1:70:46,24:46:1648:24:860:-56.6497,0,-127.536	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:39:22,17:22:784:17:597:-42.3113,0,-59.1437	0/1:23:3,20:3:108:20:697:-56.127,0,-3.15148	0/1:92:31,61:31:1108:61:2177:-168.455,0,-72.3362	0/0:111:111,0:111:3969:0:0:0,-33.4143,-357.343	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:135:66,69:66:2372:69:2480:-182.806,0,-173.062	0/1:55:31,24:31:1116:24:856:-60.8028,0,-84.195	0/1:38:17,21:17:608:21:756:-56.9281,0,-43.6129	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:6:1,5:1:36:5:180:-14.7459,0,-1.79209	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:130:68,62:68:2432:62:2228:-161.647,0,-180.002	0/0:31:31,0:31:1096:0:0:0,-9.33193,-98.9498	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	.:.:.:.:.:.:.:.	0/0:72:71,0:71:2539:0:0:0,-21.3731,-228.401	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.185	0/0:31:31,0:31:1097:0:0:0,-9.33193,-99.038	0/1:31:8,23:8:288:23:828:-65.2842,0,-16.9355	0/1:31:8,23:8:288:23:798:-62.8022,0,-16.9355	0/0:36:36,0:36:1284:0:0:0,-10.8371,-115.863	0/0:83:83,0:83:2980:0:0:0,-24.9855,-268.432	0/0:62:62,0:62:2209:0:0:0,-18.6639,-199.073	0/1:46:24,22:24:860:22:792:-57.7574,0,-63.8745	0/1:76:39,37:39:1404:37:1328:-96.9333,0,-103.781	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:63:23,40:23:828:40:1407:-107.956,0,-55.8792	0/1:51:13,38:13:468:38:1364:-107.708,0,-27.1071	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:65:36,29:36:1296:29:1040:-74.3415,0,-97.3594	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	0/0:13:13,0:13:464:0:0:0,-3.91339,-42.0975	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:78:40,38:40:1440:38:1364:-99.5804,0,-106.417	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:181:181,0:181:6464:0:0:0,-54.4864,-581.844	0/0:74:70,4:70:2520:4:144:0,-8.9626,-213.737	0/0:48:46,2:46:1656:2:72:0,-7.61272,-142.49	0/1:34:20,14:20:720:14:496:-34.7389,0,-54.8938	0/1:66:18,47:18:644:47:1663:-130.12,0,-38.4876	0/0:54:52,2:52:1860:2:72:0,-9.4189,-160.843	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3602	0/0:37:37,0:37:1308:0:0:0,-11.1381,-118.019	0/1:19:9,10:9:320:10:360:-27.0247,0,-23.4228	0/1:35:24,11:24:864:11:396:-25.4467,0,-67.5465	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:68:68,0:68:2432:0:0:0,-20.47,-219.029	0/1:65:22,43:22:788:43:1544:-119.676,0,-51.6778	0/0:123:123,0:123:4416:0:0:0,-37.0267,-397.606	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/1:38:22,16:22:777:16:576:-40.7358,0,-58.8112	0/1:15:11,4:11:396:4:144:-8.79577,0,-31.4673	0/0:77:76,1:76:2705:1:36:0,-19.581,-240.095	0/1:59:31,28:31:1108:28:978:-70.5632,0,-82.2656	0/0:92:91,0:91:3255:0:0:0,-27.3937,-292.77	0/0:35:35,0:35:1256:0:0:0,-10.536,-113.345	0/1:31:17,14:17:608:14:489:-35.0039,0,-45.7201	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2524	0/0:74:74,0:74:2651:0:0:0,-22.2762,-238.835	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/0:42:42,0:42:1508:0:0:0,-12.6433,-135.313	0/1:33:13,20:13:468:20:720:-55.1948,0,-32.5257	0/1:33:17,16:17:612:16:576:-42.0501,0,-45.4794	0/1:85:39,46:39:1404:46:1641:-122.328,0,-101.072	0/1:43:12,31:12:411:31:1112:-87.4471,0,-24.3736	0/0:78:78,0:78:2791:0:0:0,-23.4803,-251.43	0/0:58:58,0:58:2080:0:0:0,-17.4597,-187.47
chr12	24180068	.	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chr12	24180234	.	T	A	143043	PASS	AB=0.566328;ABP=164.611;AC=140;AF=0.744681;AN=188;AO=6832;CIGAR=1X;DP=8683;DPB=8683;DPRA=0;EPP=14838.5;EPPR=4011.55;GTI=5;LEN=1;MEANALT=1.05319;MQM=53.9445;MQMR=59.5964;NS=94;NUMALT=1;ODDS=0.275607;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=243575;QR=65827;RO=1846;RPL=6832;RPP=14838.5;RPPR=4011.55;RPR=0;RUN=1;SAF=0;SAP=14838.5;SAR=6832;SRF=0;SRP=4011.55;SRR=1846;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:31:0,31:0:0:31:1104:-99.2641,-9.33193,0	0/1:130:54,76:54:1917:76:2705:-203.639,0,-133.669	0/1:100:47,52:47:1692:52:1856:-136.479,0,-122.398	0/1:180:70,110:70:2486:110:3895:-295.91,0,-169.798	0/1:32:6,26:6:216:26:917:-72.9654,0,-10.1576	0/1:53:26,27:26:917:27:972:-71.5949,0,-66.89	1/1:112:0,112:0:0:112:4020:-360.601,-33.7154,0	0/1:117:41,76:41:1476:76:2728:-207.809,0,-97.7083	0/1:39:11,28:11:366:28:996:-76.7647,0,-21.504	1/1:165:0,165:0:0:165:5908:-530.111,-49.67,0	0/1:62:34,28:34:1224:28:1000:-71.5887,0,-90.5138	0/1:90:51,39:51:1817:39:1388:-96.9905,0,-136.709	0/1:75:29,46:29:1036:46:1648:-124.952,0,-70.9681	0/1:90:33,57:33:1180:57:2025:-154.188,0,-78.9097	1/1:93:0,93:0:0:93:3336:-299.204,-27.9958,0	0/1:56:30,26:30:1065:26:932:-67.0951,0,-79.2729	1/1:79:0,79:0:0:79:2832:-253.917,-23.7814,0	1/1:59:0,59:0:0:59:2120:-190.119,-17.7608,0	1/1:27:0,27:0:0:27:972:-87.0885,-8.12781,0	1/1:116:0,116:0:0:116:4145:-372.715,-34.9195,0	0/1:156:66,90:66:2376:90:3195:-239.854,0,-167.083	1/1:96:0,96:0:0:96:3406:-306.53,-28.8989,0	1/1:29:0,29:0:0:29:1040:-93.6223,-8.72987,0	0/1:100:34,66:34:1220:66:2364:-181.63,0,-79.9855	0/1:58:15,43:15:525:43:1525:-119.394,0,-30.0963	0/1:326:128,198:128:4566:198:7065:-533.392,0,-312.937	1/1:303:0,303:0:0:303:10811:-969.784,-91.2121,0	1/1:46:0,45:0:0:45:1616:-144.811,-13.5464,0	0/1:161:86,75:86:3024:75:2654:-190.278,0,-223.92	0/1:116:44,72:44:1565:72:2530:-191.315,0,-106.22	0/1:101:53,47:53:1900:47:1680:-120.979,0,-140.957	0/1:4:1,3:1:36:3:108:-8.85676,0,-2.39415	1/1:12:0,12:0:0:12:428:-38.68,-3.61236,0	1/1:8:0,8:0:0:8:288:-26.2014,-2.40824,0	0/1:2:1,1:1:36:1:36:-2.98717,0,-2.99621	0/1:6:2,4:2:72:4:144:-11.2875,0,-5.03054	0/1:239:118,121:118:4183:121:4318:-316.063,0,-304.681	1/1:216:0,216:0:0:216:7676:-689.224,-65.0225,0	1/1:63:0,63:0:0:63:2245:-200.535,-18.9649,0	0/1:3:1,2:1:36:2:72:-5.92394,0,-2.69518	1/1:142:1,141:1:36:141:4984:-443.679,-39.148,0	1/1:22:0,22:0:0:22:788:-71.011,-6.62266,0	1/1:85:0,85:0:0:85:3029:-272.086,-25.5876,0	1/1:61:0,61:0:0:61:2176:-195.86,-18.3628,0	0/1:67:43,24:43:1540:24:860:-57.497,0,-118.714	0/1:61:33,28:33:1188:28:1004:-72.2867,0,-88.8649	1/1:108:0,108:0:0:108:3830:-343.024,-32.5112,0	1/1:174:0,174:0:0:174:6180:-555.465,-52.3792,0	1/1:105:1,104:1:36:104:3724:-330.641,-28.0099,0	0/1:158:67,91:67:2397:91:3264:-245.781,0,-168.42	0/1:123:45,78:45:1589:78:2771:-212.494,0,-106.269	0/1:5:1,4:1:36:4:144:-11.7989,0,-2.09312	0/1:81:21,60:21:726:60:2133:-166.648,0,-41.248	0/1:38:17,21:17:608:21:741:-55.47,0,-43.6105	0/1:9:5,4:5:180:4:140:-10.2068,0,-13.8428	0/1:119:50,69:50:1762:69:2438:-183.097,0,-123.032	1/1:9:0,9:0:0:9:305:-27.7582,-2.70927,0	1/1:7:0,7:0:0:7:252:-22.9107,-2.10721,0	1/1:22:0,22:0:0:22:792:-71.4183,-6.62266,0	1/1:76:0,76:0:0:76:2700:-242.141,-22.8783,0	0/1:144:64,80:64:2304:80:2872:-214.844,0,-164.263	1/1:7:0,7:0:0:7:252:-23.0124,-2.10721,0	1/1:183:0,183:0:0:183:6502:-584.764,-55.0885,0	1/1:265:2,262:2:72:262:9391:-835.268,-72.9949,0	1/1:85:3,82:3:104:82:2932:-253.514,-15.8847,0	0/1:84:40,44:40:1425:44:1548:-114.148,0,-103.252	0/1:112:49,63:49:1760:63:2246:-168.412,0,-124.961	1/1:97:1,96:1:36:96:3429:-304.165,-25.6016,0	1/1:14:0,14:0:0:14:500:-45.2742,-4.21442,0	1/1:123:0,123:0:0:123:4370:-391.489,-37.0267,0	0/1:103:57,46:57:2048:46:1652:-117.809,0,-153.585	0/1:25:11,14:11:396:14:489:-36.7825,0,-28.457	1/1:147:0,147:0:0:147:5237:-467.403,-44.2514,0	1/1:118:0,118:0:0:118:4152:-371.935,-35.5215,0	0/1:138:36,102:36:1292:102:3626:-283.73,0,-75.037	1/1:178:0,177:0:0:177:6340:-568.373,-53.2823,0	1/1:81:1,80:1:21:80:2864:-254.455,-22.2835,0	0/1:141:49,92:49:1745:92:3299:-252.56,0,-114.863	0/1:19:8,11:8:288:11:396:-30.1727,0,-20.5478	1/1:122:0,122:0:0:122:4339:-389.613,-36.7257,0	0/1:99:42,57:42:1474:57:1984:-148.34,0,-103.14	1/1:175:0,175:0:0:175:6254:-561.468,-52.6803,0	1/1:104:0,104:0:0:104:3728:-334.636,-31.3071,0	0/1:77:39,38:39:1404:38:1360:-99.4351,0,-103.433	1/1:84:0,84:0:0:84:2997:-269.572,-25.2865,0	1/1:150:3,147:3:108:147:5275:-463.347,-35.0793,0	0/1:29:13,16:13:468:16:567:-42.2897,0,-33.693	1/1:79:0,79:0:0:79:2802:-250.27,-23.7814,0	0/1:95:45,50:45:1605:50:1780:-130.729,0,-116.101	0/1:40:17,23:17:612:23:820:-61.4936,0,-43.2374	0/1:91:45,46:45:1620:46:1644:-119.489,0,-118.418	0/1:75:54,21:54:1944:21:752:-45.297,0,-152.654	1/1:76:1,75:1:36:75:2692:-238.169,-19.28,0	1/1:100:1,99:1:36:99:3529:-313.049,-26.5073,0
chr12	24181423	.	G	C	134411	PASS	AB=0.483396;ABP=12.6011;AC=137;AF=0.728723;AN=188;AO=5159;CIGAR=1X;DP=7246;DPB=7246;DPRA=38.9462;EPP=5.77189;EPPR=32.7844;GTI=1;LEN=1;MEANALT=1.04301;MQM=58.9546;MQMR=58.879;NS=94;NUMALT=1;ODDS=1.26852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=180428;QR=72341;RO=2083;RPL=33;RPP=10920.8;RPPR=4379.73;RPR=5126;RUN=1;SAF=2653;SAP=12.1057;SAR=2506;SRF=972;SRP=23.1519;SRR=1111;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:716:-64.7672,-6.0206,0	0/1:59:28,31:28:982:31:1061:-78.0288,0,-70.9299	0/1:109:49,60:49:1723:60:2077:-153.448,0,-122.525	0/1:157:81,76:81:2773:76:2671:-192.906,0,-202.526	0/1:15:7,8:7:218:8:288:-21.7066,0,-15.4089	0/1:32:16,16:16:541:16:555:-40.6071,0,-39.3761	1/1:93:0,93:0:0:93:3214:-289.232,-27.9958,0	0/1:109:56,53:56:1963:53:1880:-136.493,0,-143.243	0/1:58:34,24:34:1189:24:823:-56.9161,0,-89.8162	1/1:89:0,89:0:0:89:3069:-276.376,-26.7917,0	0/1:118:65,53:65:2264:53:1841:-130.363,0,-168.394	0/1:150:77,73:77:2649:73:2555:-184.901,0,-192.832	0/1:124:56,68:56:1956:68:2395:-178.03,0,-138.937	0/1:111:58,52:58:1997:52:1830:-131.361,0,-146.501	1/1:109:0,109:0:0:109:3786:-340.615,-32.8123,0	0/1:113:61,52:61:2086:52:1765:-125.104,0,-153.759	1/1:69:0,69:0:0:69:2435:-219.299,-20.7711,0	1/1:65:0,65:0:0:65:2251:-202.842,-19.567,0	1/1:46:0,46:0:0:46:1609:-144.226,-13.8474,0	1/1:83:1,82:1:36:82:2887:-255.957,-21.3872,0	0/1:110:71,39:71:2443:39:1356:-88.9056,0,-186.799	1/1:29:0,29:0:0:29:1014:-91.5366,-8.72987,0	1/1:43:0,43:0:0:43:1478:-133.255,-12.9443,0	0/1:41:23,18:23:807:18:639:-45.4914,0,-60.2706	0/1:26:19,7:19:656:7:243:-14.3807,0,-51.3666	0/1:166:82,83:82:2900:83:2947:-215.387,0,-211.027	1/1:131:4,127:4:144:127:4473:-389.314,-26.126,0	1/1:48:1,47:1:36:47:1610:-141.536,-10.8512,0	0/1:137:70,67:70:2457:67:2310:-165.924,0,-180.07	0/1:68:41,27:41:1460:27:949:-65.1206,0,-111.114	0/1:75:48,27:48:1677:27:955:-63.6831,0,-128.573	0/1:20:9,11:9:324:11:381:-28.6,0,-23.4853	1/1:3:0,3:0:0:3:104:-9.7028,-0.90309,0	1/1:7:0,7:0:0:7:248:-22.1662,-2.10721,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:16:5,11:5:180:11:372:-28.9882,0,-11.7332	0/1:211:108,103:108:3683:103:3580:-258.76,0,-267.766	1/1:32:0,32:0:0:32:1136:-102.549,-9.63296,0	1/1:78:0,78:0:0:78:2749:-247.62,-23.4803,0	0/0:2:2,0:2:63:0:0:0,-0.60206,-5.98254	1/1:112:0,112:0:0:112:3943:-354.663,-33.7154,0	1/1:44:0,44:0:0:44:1562:-140.743,-13.2453,0	1/1:64:0,64:0:0:64:2202:-198.356,-19.2659,0	1/1:67:0,67:0:0:67:2326:-209.537,-20.169,0	0/1:74:36,38:36:1223:38:1318:-96.6329,0,-88.0645	0/1:66:32,34:32:1122:34:1208:-89.1468,0,-81.0159	1/1:51:1,50:1:36:50:1780:-156.803,-11.7543,0	1/1:105:1,104:1:36:104:3669:-326.753,-28.0103,0	1/1:62:0,62:0:0:62:2174:-195.852,-18.6639,0	0/1:114:65,49:65:2273:49:1736:-121.935,0,-170.384	0/1:61:20,41:20:686:41:1416:-109.347,0,-43.5589	0/1:11:6,5:6:212:5:176:-12.8719,0,-16.0666	0/1:85:38,47:38:1341:47:1658:-123.892,0,-95.3919	0/1:76:36,40:36:1251:40:1397:-103.071,0,-89.9436	0/1:6:4,2:4:140:2:72:-5.03054,0,-11.1384	0/1:108:57,50:57:1959:50:1732:-123.731,0,-144.016	1/1:15:0,15:0:0:15:536:-48.5712,-4.51545,0	0/1:11:4,7:4:135:7:248:-19.3492,0,-9.17106	1/1:18:0,18:0:0:18:644:-58.2847,-5.41854,0	1/1:78:0,78:0:0:78:2709:-243.399,-23.4803,0	0/1:126:67,59:67:2291:59:2095:-150.491,0,-167.677	1/1:8:0,8:0:0:8:267:-24.3545,-2.40824,0	1/1:162:0,162:0:0:162:5704:-513.141,-48.7669,0	1/1:106:0,106:0:0:106:3732:-335.862,-31.9092,0	0/1:69:10,59:10:356:59:2083:-165.529,0,-11.6102	0/1:46:25,21:25:884:21:717:-50.9736,0,-66.0262	0/1:106:61,45:61:2096:45:1556:-107.874,0,-156.914	1/1:74:0,74:0:0:74:2606:-234.29,-22.2762,0	1/1:77:0,77:0:0:77:2706:-243.71,-23.1793,0	1/1:54:0,54:0:0:54:1928:-173.419,-16.2556,0	0/1:60:30,30:30:1042:30:1047:-76.3713,0,-75.9563	0/1:36:26,10:26:915:10:356:-21.543,0,-71.7731	1/1:57:0,57:0:0:57:2035:-183.416,-17.1587,0	1/1:72:0,72:0:0:72:2550:-228.915,-21.6742,0	0/1:123:58,65:58:1982:65:2305:-170.621,0,-141.472	1/1:142:2,140:2:72:140:4946:-438.218,-35.91,0	1/1:31:0,31:0:0:31:1108:-100.028,-9.33193,0	0/1:140:76,63:76:2665:63:2218:-157.623,0,-197.672	0/1:16:13,3:13:464:3:104:-4.88633,0,-37.281	1/1:71:1,70:1:32:70:2478:-219.932,-18.1738,0	0/1:83:43,40:43:1494:40:1406:-101.81,0,-109.726	1/1:120:0,120:0:0:120:4145:-373.112,-36.1236,0	1/1:81:0,81:0:0:81:2814:-253.354,-24.3834,0	0/1:109:52,57:52:1819:57:1971:-144.825,0,-131.062	1/1:80:1,79:1:32:79:2696:-239.584,-20.8831,0	1/1:153:4,149:4:140:149:5095:-445.431,-33.1134,0	0/1:23:8,15:8:284:15:523:-40.4388,0,-18.9435	1/1:95:0,95:0:0:95:3269:-294.421,-28.5979,0	0/1:111:52,59:52:1843:59:2070:-153.141,0,-132.735	0/1:93:45,48:45:1576:48:1684:-123.79,0,-113.546	0/1:126:59,67:59:2028:67:2348:-173.56,0,-144.676	0/1:94:75,19:75:2597:19:663:-31.6934,0,-205.526	1/1:113:0,113:0:0:113:3955:-355.989,-34.0164,0	1/1:182:0,182:0:0:182:6346:-570.934,-54.7875,0
chr12	24181439	.	GTCGC	GTCGT,ATCGT	194272	PASS	AB=0.465378,0.523611;ABP=45.5626,22.8011;AC=137,51;AF=0.728723,0.271277;AN=188;AO=5162,2157;CIGAR=4M1X,1X3M1X;DP=7391;DPB=7392.6;DPRA=39.7258,1.2301;EPP=11212.2,4686.88;EPPR=3.73412;GTI=1;LEN=1,5;MEANALT=2.24731,2.7193;MQM=58.9909,58.7506;MQMR=60;NS=94;NUMALT=2;ODDS=0.498284;PAIRED=0,0;PAIREDR=0;PAO=4,4;PQA=142,142;PQR=0;PRO=0;QA=182144,73406;QR=108;RO=3;RPL=2542,985;RPP=5.56963,38.2139;RPPR=9.52472;RPR=2620,1172;RUN=1,1;SAF=2542,985;SAP=5.56963,38.2139;SAR=2620,1172;SRF=2;SRP=3.73412;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20,0:0:0:20,0:701,0:-63.4113,-6.0206,0,-63.4113,-6.0206,-63.4113	1/2:63:0,32,30:0:0:32,30:1124,1019:-174.228,-82.7476,-73.1146,-91.5912,0,-82.5603	1/2:108:0,59,49:0:0:59,49:2088,1706:-308.2,-139.061,-121.3,-169.488,0,-154.738	1/2:160:0,73,84:0:0:73,84:2570,2861:-440.691,-232.155,-210.179,-208.656,0,-183.369	1/2:16:0,8,8:0:0:8,8:284,253:-43.7851,-20.6706,-18.2624,-23.4497,0,-21.0415	1/2:35:0,17,18:0:0:17,18:604,587:-96.7966,-47.7064,-42.5889,-49.4307,0,-44.0121	1/1:85:0,83,0:0:0:83,0:2961,0:-266.438,-24.9855,0,-266.438,-24.9855,-266.438	1/2:115:0,48,61:0:0:48,61:1702,2046:-303.767,-165.207,-150.757,-138.596,0,-120.233	1/2:63:0,27,36:0:0:27,36:923,1244:-176.221,-101.386,-93.2584,-75.1776,0,-64.3405	1/1:91:0,91,0:0:0:91,0:3222,0:-290.124,-27.3937,0,-290.124,-27.3937,-290.124	1/2:125:0,57,68:0:0:57,68:1978,2340:-350.995,-190.32,-173.161,-161.021,0,-140.551	1/2:147:0,68,75:0:0:68,75:2364,2561:-399.704,-207.529,-187.059,-192.216,0,-169.638	1/2:125:0,66,59:0:0:66,59:2353,2047:-358.059,-166.693,-146.825,-191.717,0,-173.956	1/2:120:0,54,65:0:0:54,65:1906,2177:-331.386,-176.311,-160.055,-155.148,0,-135.581	1/1:114:0,114,0:0:0:114,0:4032,0:-362.741,-34.3174,0,-362.741,-34.3174,-362.741	1/2:112:0,49,61:0:0:49,61:1747,2032:-306.891,-164.475,-149.724,-142.489,0,-124.126	1/1:69:0,69,0:0:0:69,0:2406,0:-216.653,-20.7711,0,-216.653,-20.7711,-216.653	1/1:65:0,65,0:0:0:65,0:2277,0:-205.187,-19.567,0,-205.187,-19.567,-205.187	1/1:47:0,46,0:0:0:46,0:1611,0:-144.997,-13.8474,0,-144.997,-13.8474,-144.997	1/1:84:0,80,0:0:0:80,0:2829,0:-254.375,-24.0824,0,-254.375,-24.0824,-254.375	1/2:113:0,38,72:0:0:38,72:1323,2465:-307.239,-199.913,-188.474,-107.407,0,-85.7325	1/1:30:0,30,0:0:0:30,0:1061,0:-95.7332,-9.0309,0,-95.7332,-9.0309,-95.7332	1/1:46:0,46,0:0:0:46,0:1627,0:-146.686,-13.8474,0,-146.686,-13.8474,-146.686	1/2:45:0,20,25:0:0:20,25:708,863:-127.882,-70.2081,-64.1875,-58.0231,0,-50.4974	1/2:28:0,6,21:0:0:6,21:204,689:-72.1614,-55.6109,-53.8047,-16.6081,0,-10.2865	1/2:167:0,80,83:0:0:80,83:2825,2884:-464.429,-234.434,-210.352,-230.054,0,-205.068	1/1:131:0,127,4:0:0:127,4:4494,124:-404.199,-38.2308,0,-394.248,-27.9688,-393.044	1/1:50:1,49,0:1:36:49,0:1671,0:-146.972,-11.4532,0,-147.273,-14.7505,-150.21	1/2:137:0,64,71:0:0:64,71:2266,2445:-382.195,-198.484,-179.218,-183.742,0,-162.369	1/2:68:0,25,41:0:0:25,41:888,1414:-186.935,-114.914,-107.388,-72.0851,0,-59.7428	1/2:76:0,28,47:0:0:28,47:991,1636:-213.798,-133.078,-124.649,-80.8075,0,-66.6591	1/2:20:0,11,9:0:0:11,9:396,310:-57.8441,-25.524,-22.2127,-32.6714,0,-29.9621	1/1:4:0,4,0:0:0:4,0:140,0:-12.9399,-1.20412,0,-12.9399,-1.20412,-12.9399	1/1:7:0,7,0:0:0:7,0:248,0:-22.6642,-2.10721,0,-22.6642,-2.10721,-22.6642	1/2:7:0,4,3:0:0:4,3:144,108:-20.9217,-9.17208,-7.96796,-12.1095,0,-11.2064	1/2:16:0,11,5:0:0:11,5:396,171:-46.5443,-14.2204,-10.909,-32.6714,0,-31.1663	1/2:222:0,101,116:0:0:101,116:3574,3921:-608.644,-317.667,-287.263,-291.026,0,-256.107	1/1:32:0,32,0:0:0:32,0:1123,0:-101.377,-9.63296,0,-101.377,-9.63296,-101.377	1/1:77:0,76,0:0:0:76,0:2694,0:-242.315,-22.8783,0,-242.315,-22.8783,-242.315	2/2:2:0,0,2:0:0:0,2:0,68:-6.45577,-6.45577,-6.45577,-0.60206,-0.60206,0	1/1:112:0,112,0:0:0:112,0:3966,0:-356.211,-33.7154,0,-356.211,-33.7154,-356.211	1/1:46:0,45,0:0:0:45,0:1599,0:-143.623,-13.5464,0,-143.623,-13.5464,-143.623	1/1:62:0,62,0:0:0:62,0:2199,0:-198.145,-18.6639,0,-198.145,-18.6639,-198.145	1/1:68:0,68,0:0:0:68,0:2372,0:-213.673,-20.47,0,-213.673,-20.47,-213.673	1/2:76:0,39,37:0:0:39,37:1388,1220:-212.067,-98.9392,-87.199,-113.471,0,-102.333	1/2:66:0,33,33:0:0:33,33:1180,1143:-189.192,-92.9803,-83.0463,-96.5054,0,-86.5714	1/1:51:0,49,2:0:0:49,2:1734,53:-156.017,-14.7505,0,-151.854,-10.3187,-151.251	1/1:104:0,102,1:0:0:102,1:3597,36:-323.54,-30.7051,0,-320.602,-27.7181,-320.301	1/1:63:0,63,0:0:0:63,0:2213,0:-199.351,-18.9649,0,-199.351,-18.9649,-199.351	1/2:117:0,47,70:0:0:47,70:1676,2365:-328.3,-191.942,-177.794,-136.706,0,-115.634	1/2:60:0,39,20:0:0:39,20:1387,677:-167.999,-54.9735,-43.2333,-113.143,0,-107.122	1/2:12:1,6,5:1:36:6,5:216,174:-28.5106,-11.1829,-12.3161,-14.6846,0,-16.1169	1/2:86:0,47,39:0:0:47,39:1671,1340:-245.305,-109.153,-95.0041,-136.501,0,-124.761	1/2:74:0,38,36:0:0:38,36:1360,1244:-212.235,-101.4,-89.9605,-111.186,0,-100.349	1/2:6:0,2,4:0:0:2,4:57,139:-16.1536,-11.6481,-11.046,-4.81125,0,-3.60713	1/2:105:0,45,59:0:0:45,59:1604,1979:-290.825,-160.092,-146.546,-130.662,0,-112.901	1/1:17:0,17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chr12	24181782	.	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chr12	24223740	.	G	C	132271	PASS	AB=0.550179;ABP=82.5523;AC=137;AF=0.728723;AN=188;AO=6212;CIGAR=1X;DP=7865;DPB=7865;DPRA=84.5591;EPP=13440.1;EPPR=3540.47;GTI=6;LEN=1;MEANALT=1.04301;MQM=59.9733;MQMR=59.9915;NS=94;NUMALT=1;ODDS=0.263418;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222149;QR=59067;RO=1649;RPL=6206;RPP=13440.1;RPPR=3540.47;RPR=6;RUN=1;SAF=0;SAP=13492.2;SAR=6212;SRF=0;SRP=3583.77;SRR=1649;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:707:-63.9546,-6.0206,0	0/1:124:42,82:42:1504:82:2929:-226.515,0,-98.3269	0/1:172:85,87:85:3044:87:3094:-226.908,0,-222.413	0/1:134:52,82:52:1872:82:2925:-223.137,0,-128.421	0/1:38:14,24:14:504:24:864:-66.6434,0,-34.259	0/1:51:21,30:21:756:30:1080:-82.1607,0,-53.0147	1/1:188:0,188:0:0:188:6721:-604.962,-56.5936,0	0/1:87:37,50:37:1328:50:1784:-134.653,0,-93.6326	0/1:86:45,41:45:1620:41:1448:-104.724,0,-120.201	1/1:105:0,105:0:0:105:3752:-337.881,-31.6082,0	0/1:31:12,19:12:432:19:684:-52.5584,0,-29.8893	0/1:26:12,14:12:432:14:504:-37.8713,0,-31.3944	0/1:32:12,20:12:424:20:720:-55.4958,0,-28.8635	0/1:46:24,22:24:864:22:788:-57.3974,0,-64.2352	1/1:23:0,23:0:0:23:828:-74.8441,-6.92369,0	0/1:28:11,17:11:396:17:604:-46.2618,0,-27.5539	1/1:49:0,49:0:0:49:1764:-159.044,-14.7505,0	0/1:18:11,7:11:392:7:252:-17.6104,0,-30.2015	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:247:0,247:0:0:247:8814:-793.247,-74.3544,0	0/1:115:58,57:58:2076:57:2028:-148.174,0,-152.492	1/1:175:0,174:0:0:174:6232:-560.611,-52.3792,0	1/1:73:0,72:0:0:72:2577:-231.819,-21.6742,0	0/1:67:38,28:38:1353:28:998:-69.9072,0,-101.841	0/1:96:45,51:45:1620:51:1828:-135.902,0,-117.191	0/1:273:105,168:105:3760:168:5970:-455.225,0,-256.418	1/1:164:0,164:0:0:164:5873:-528.679,-49.3689,0	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	0/1:245:116,129:116:4144:129:4608:-341.13,0,-299.392	0/1:96:34,62:34:1224:62:2224:-171.525,0,-81.5682	0/1:114:54,60:54:1940:60:2133:-157.92,0,-140.559	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:28:0,28:0:0:28:1008:-91.0364,-8.42884,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:11:2,9:2:72:9:311:-25.0124,0,-3.52539	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:81:30,51:30:1072:51:1813:-139.066,0,-72.409	1/1:227:0,227:0:0:227:8114:-730.275,-68.3338,0	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:131:1,130:1:36:130:4664:-416.235,-35.8367,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:210:2,208:2:72:208:7431:-661.997,-56.3796,0	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	0/1:26:13,13:13:460:13:464:-34.2707,0,-33.9086	0/1:103:38,65:38:1356:65:2311:-177.244,0,-91.3344	1/1:102:1,101:1:21:101:3596:-321.746,-28.6051,0	1/1:155:0,155:0:0:155:5529:-497.734,-46.6597,0	1/1:173:0,173:0:0:173:6182:-556.25,-52.0782,0	0/1:75:49,26:49:1756:26:928:-61.261,0,-135.747	0/1:210:102,108:102:3656:108:3880:-286.177,0,-266.027	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:149:61,88:61:2180:88:3156:-239.411,0,-151.613	0/1:50:17,33:17:599:33:1188:-92.1771,0,-39.1866	0/1:10:6,4:6:207:4:144:-10.3033,0,-15.9566	0/1:95:48,47:48:1712:47:1683:-123.159,0,-125.768	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:42:0,42:0:0:42:1508:-136.015,-12.6433,0	1/1:147:0,146:0:0:146:5225:-470.026,-43.9504,0	0/1:77:28,49:28:1004:49:1764:-135.86,0,-67.4966	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:154:0,154:0:0:154:5483:-493.59,-46.3586,0	1/1:186:0,186:0:0:186:6661:-599.562,-55.9916,0	1/1:77:7,70:7:252:70:2498:-202.051,-0.158622,0	0/1:51:23,28:23:828:28:1000:-74.9628,0,-59.4916	0/1:164:59,105:59:2124:105:3760:-289.23,0,-142.059	1/1:159:1,158:1:36:158:5663:-506.188,-44.2655,0	1/1:12:1,11:1:36:11:396:-32.3845,-0.0140851,0	1/1:102:0,102:0:0:102:3645:-328.253,-30.7051,0	0/1:58:30,28:30:1068:28:1008:-73.5766,0,-78.9677	0/1:32:14,18:14:504:18:648:-49.0189,0,-36.0651	1/1:214:0,214:0:0:214:7654:-688.893,-64.4204,0	1/1:69:0,69:0:0:69:2476:-223.093,-20.7711,0	0/1:178:90,88:90:3232:88:3147:-229.872,0,-237.518	1/1:120:0,120:0:0:120:4287:-386.006,-36.1236,0	1/1:108:0,108:0:0:108:3865:-348.044,-32.5112,0	0/1:49:19,30:19:684:30:1080:-82.7628,0,-47.1399	0/1:13:10,3:10:356:3:108:-6.16178,0,-28.4679	1/1:96:0,96:0:0:96:3433:-309.182,-28.8989,0	0/1:118:62,56:62:2228:56:2004:-145.111,0,-165.262	1/1:232:0,232:0:0:232:8315:-748.354,-69.839,0	1/1:70:0,70:0:0:70:2512:-226.33,-21.0721,0	0/1:30:20,10:20:720:10:360:-23.7134,0,-56.0979	1/1:23:0,23:0:0:23:820:-72.9293,-6.92369,0	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	0/1:12:4,8:4:144:8:288:-22.655,0,-9.70126	1/1:43:0,43:0:0:43:1539:-138.802,-12.9443,0	0/1:38:21,17:21:752:17:612:-43.7834,0,-56.5671	0/1:28:11,17:11:392:17:604:-46.2618,0,-27.1912	0/1:44:20,24:20:711:24:860:-64.4765,0,-51.0703	0/1:32:22,10:22:788:10:360:-23.1113,0,-61.6118	1/1:53:0,53:0:0:53:1904:-171.638,-15.9546,0	1/1:39:0,39:0:0:39:1396:-125.939,-11.7402,0
chr12	24247158	.	A	G	15441.2	PASS	AB=0.433839;ABP=90.6464;AC=49;AF=0.263441;AN=186;AO=1007;CIGAR=1X;DP=4538;DPB=4538;DPRA=1.07364;EPP=2189.68;EPPR=7590.33;GTI=2;LEN=1;MEANALT=1.01852;MQM=59.9533;MQMR=59.9697;NS=93;NUMALT=1;ODDS=0.454872;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=35847;QR=126549;RO=3530;RPL=0;RPP=2189.68;RPPR=7590.33;RPR=1007;RUN=1;SAF=1007;SAP=2189.68;SAR=0;SRF=3530;SRP=7668.31;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:30:12,18:12:432:18:644:-49.2597,0,-30.1903	0/1:59:34,25:34:1224:25:883:-62.0267,0,-92.7063	0/1:107:56,51:56:1989:51:1823:-132.127,0,-147.043	0/1:14:4,10:4:144:10:337:-26.4403,0,-9.0992	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/1:36:20,16:20:720:16:572:-40.9763,0,-54.2917	0/1:51:30,21:30:1076:21:752:-52.6537,0,-81.8003	0/0:72:72,0:72:2584:0:0:0,-21.6742,-232.809	0/1:41:24,17:24:864:17:612:-43.0712,0,-65.7403	0/1:70:44,26:44:1584:26:927:-62.6753,0,-121.779	0/1:38:20,18:20:720:18:636:-46.1289,0,-53.6896	0/1:72:37,35:37:1332:35:1248:-90.9507,0,-98.5082	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:39:25,14:25:896:14:499:-33.5054,0,-69.2202	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.229	0/1:21:12,9:12:428:9:324:-23.1842,0,-32.5372	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/1:81:48,33:48:1724:33:1167:-80.953,0,-131.062	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:31:31,0:31:1101:0:0:0,-9.33193,-99.3984	0/1:21:10,11:10:360:11:396:-29.6588,0,-26.4227	0/1:15:12,3:12:432:3:108:-5.55972,0,-34.7057	0/1:114:74,40:74:2648:40:1428:-94.5001,0,-204.249	0/0:91:91,0:91:3259:0:0:0,-27.3937,-293.212	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:116:69,47:69:2476:47:1692:-117.647,0,-188.174	0/1:79:42,37:42:1512:37:1322:-95.5002,0,-112.593	0/1:54:34,20:34:1220:20:716:-48.5121,0,-93.8512	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:152:76,76:76:2728:76:2681:-195.779,0,-200.006	0/0:69:69,0:69:2480:0:0:0,-20.7711,-223.453	0/0:40:39,1:39:1404:1:36:0,-8.44292,-123.061	.:.:.:.:.:.:.:.	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:38:15,23:15:540:23:812:-61.9618,0,-37.4974	0/1:34:14,20:14:504:20:697:-52.8156,0,-35.4631	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	0/0:72:72,0:72:2564:0:0:0,-21.6742,-230.781	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/1:51:26,25:26:932:25:888:-64.8865,0,-68.8463	0/1:73:53,20:53:1904:20:720:-43.1536,0,-149.663	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:55:24,31:24:860:31:1116:-84.195,0,-61.1652	0/1:34:25,9:25:900:9:324:-19.2708,0,-71.086	0/1:10:7,3:7:252:3:104:-6.69251,0,-20.0187	0/1:51:31,20:31:1108:20:712:-49.0541,0,-84.6785	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:82:45,37:45:1616:37:1301:-92.7043,0,-121.046	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:167:167,0:167:5977:0:0:0,-50.272,-538.035	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.194	0/0:51:51,0:51:1817:0:0:0,-15.3525,-163.809	0/1:29:18,11:18:640:11:396:-27.2529,0,-49.1994	0/1:55:34,21:34:1216:21:740:-50.3667,0,-93.1899	0/0:87:85,2:85:3052:2:72:0,-19.3529,-268.072	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.138	0/1:33:22,11:22:788:11:396:-26.0488,0,-61.3108	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/0:61:61,0:61:2196:0:0:0,-18.3628,-197.905	0/0:75:75,0:75:2696:0:0:0,-22.5772,-242.884	0/1:58:35,23:35:1245:23:809:-55.6682,0,-94.893	0/0:116:115,1:115:4109:1:36:0,-31.3212,-366.396	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:103:65,38:65:2321:38:1341:-89.9289,0,-178.142	0/1:13:6,7:6:216:7:248:-18.7508,0,-15.8771	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/1:42:24,17:24:864:17:608:-42.3501,0,-65.3805	0/0:89:89,0:89:3173:0:0:0,-26.7917,-285.793	0/0:56:54,2:54:1940:2:68:0,-10.4,-168.418	0/1:41:25,16:25:900:16:572:-39.4712,0,-68.9788	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:109:108,1:108:3880:1:32:0,-29.613,-346.194	0/1:19:12,7:12:432:7:248:-16.9446,0,-33.5016	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:46:32,14:32:1152:14:504:-31.8507,0,-90.1428	0/1:30:15,15:15:540:15:532:-39.1822,0,-39.9056	0/1:91:42,49:42:1508:49:1756:-130.93,0,-108.621	0/1:44:16,28:16:576:28:1008:-77.7906,0,-38.9297	0/0:85:85,0:85:3037:0:0:0,-25.5875,-273.559	0/0:93:93,0:93:3344:0:0:0,-27.9958,-301.176
chr12	24247167	.	C	T	20449.2	PASS	AB=0.43696;ABP=82.9535;AC=49;AF=0.263441;AN=186;AO=1017;CIGAR=1X;DP=4551;DPB=4551;DPRA=1.06452;EPP=689.445;EPPR=3587.65;GTI=1;LEN=1;MEANALT=1.01887;MQM=59.9351;MQMR=59.9751;NS=93;NUMALT=1;ODDS=1.11894;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=36361;QR=126249;RO=3533;RPL=792;RPP=689.445;RPPR=3587.65;RPR=225;RUN=1;SAF=1017;SAP=2211.4;SAR=0;SRF=3533;SRP=7674.82;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5798	0/1:30:12,18:12:432:18:633:-48.2642,0,-30.1903	0/1:60:34,26:34:1208:26:932:-66.1371,0,-90.9643	0/1:106:55,51:55:1964:51:1796:-130.006,0,-145.126	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	0/1:16:10,6:10:360:6:216:-14.974,0,-27.9278	0/0:57:57,0:57:2036:0:0:0,-17.1587,-183.512	0/1:40:21,19:21:756:19:665:-48.1316,0,-56.326	0/1:51:29,22:29:1023:22:788:-55.8923,0,-77.0292	0/0:73:73,0:73:2598:0:0:0,-21.9752,-234.068	0/1:43:25,18:25:900:18:648:-45.7076,0,-68.3767	0/1:71:44,27:44:1562:27:967:-65.9742,0,-119.497	0/1:37:20,17:20:720:17:608:-43.9139,0,-53.9907	0/1:71:34,37:34:1211:37:1324:-98.089,0,-87.9224	0/0:35:35,0:35:1245:0:0:0,-10.536,-112.353	0/1:39:25,14:25:896:14:504:-33.9579,0,-69.2202	0/0:33:33,0:33:1179:0:0:0,-9.93399,-106.417	0/1:22:12,10:12:432:10:360:-26.1216,0,-32.5985	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:43:43,0:43:1540:0:0:0,-12.9443,-138.893	0/1:80:48,31:48:1707:31:1116:-76.6105,0,-129.774	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:33:32,1:32:1139:1:32:0,-6.73468,-99.6191	0/1:20:10,10:10:351:10:360:-26.7213,0,-25.9061	0/1:16:12,4:12:428:4:135:-7.66591,0,-34.0423	0/1:111:72,39:72:2545:39:1400:-92.8849,0,-195.886	0/0:89:89,0:89:3171:0:0:0,-26.7917,-284.977	0/0:21:21,0:21:743:0:0:0,-6.32163,-67.1933	0/1:115:68,47:68:2400:47:1673:-116.237,0,-181.637	0/1:79:43,36:43:1544:36:1296:-93.1626,0,-115.472	0/1:55:34,21:34:1220:21:756:-51.8106,0,-93.5502	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:11:9,2:9:320:2:57:-2.10198,0,-25.831	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:153:79,74:79:2836:74:2664:-193.947,0,-209.42	0/0:69:69,0:69:2472:0:0:0,-20.7711,-222.734	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.538	.:.:.:.:.:.:.:.	0/0:61:61,0:61:2177:0:0:0,-18.3628,-196.194	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/1:38:15,23:15:540:23:828:-63.405,0,-37.4974	0/1:34:14,20:14:504:20:708:-53.8106,0,-35.4631	0/0:29:29,0:29:1023:0:0:0,-8.72987,-92.3817	0/0:74:74,0:74:2655:0:0:0,-22.2762,-238.968	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.424	0/1:52:26,26:26:936:26:932:-68.5453,0,-68.9059	0/1:74:53,21:53:1900:21:756:-46.091,0,-149.002	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:55:24,31:24:856:31:1112:-83.8347,0,-60.8045	0/1:34:25,9:25:896:9:324:-19.2708,0,-70.7253	0/1:10:7,3:7:248:3:104:-6.69251,0,-19.6539	0/1:52:32,20:32:1135:20:716:-49.1118,0,-86.8045	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:40:40,0:40:1432:0:0:0,-12.0412,-129.178	0/1:82:46,36:46:1648:36:1296:-92.2595,0,-123.924	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:167:167,0:167:5957:0:0:0,-50.272,-536.238	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.801	0/1:31:18,13:18:631:13:458:-32.2221,0,-47.7838	0/1:57:34,23:34:1220:23:828:-57.6854,0,-92.9481	0/0:91:89,2:89:3160:2:68:0,-20.936,-278.167	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:49:49,0:49:1742:0:0:0,-14.7505,-156.873	0/1:32:21,11:21:747:11:396:-26.3498,0,-57.9213	0/1:17:7,10:7:252:10:356:-27.2637,0,-17.9114	0/0:59:59,0:59:2108:0:0:0,-17.7608,-189.989	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/1:58:34,24:34:1220:24:839:-58.3628,0,-92.6471	0/0:115:114,1:114:4096:1:36:0,-31.0202,-365.226	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:103:65,38:65:2328:38:1364:-92.0015,0,-178.774	0/1:13:6,7:6:212:7:252:-19.1156,0,-15.5114	0/0:61:61,0:61:2175:0:0:0,-18.3628,-196.016	0/1:42:24,18:24:864:18:644:-45.6473,0,-65.4393	0/0:84:84,0:84:2988:0:0:0,-25.2865,-269.154	0/0:55:55,0:55:1958:0:0:0,-16.5566,-176.494	0/1:42:25,17:25:896:17:612:-42.7702,0,-68.3171	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:108:107,1:107:3852:1:36:0,-28.913,-343.275	0/1:19:12,7:12:428:7:252:-17.3094,0,-33.1392	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/1:46:32,14:32:1143:14:504:-31.8507,0,-89.3313	0/1:31:16,15:16:572:15:531:-38.79,0,-42.4815	0/1:90:42,48:42:1500:48:1715:-127.542,0,-108.202	0/1:45:17,28:17:612:28:1008:-77.4896,0,-41.8671	0/0:86:86,0:86:3079:0:0:0,-25.8886,-277.338	0/0:93:93,0:93:3336:0:0:0,-27.9958,-300.457
chr12	24248121	.	T	C	77692.7	PASS	AB=0.389324;ABP=383.694;AC=133;AF=0.715054;AN=186;AO=3910;CIGAR=1X;DP=6122;DPB=6122;DPRA=16.625;EPP=8493.47;EPPR=4799.79;GTI=6;LEN=1;MEANALT=1.03261;MQM=52.5665;MQMR=42.5084;NS=93;NUMALT=1;ODDS=1.32322;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=139256;QR=78990;RO=2209;RPL=0;RPP=8493.47;RPPR=4799.79;RPR=3910;RUN=1;SAF=0;SAP=8493.47;SAR=3910;SRF=0;SRP=4799.79;SRR=2209;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:35:0,35:0:0:35:1251:-112.439,-10.5361,0	0/1:61:31,30:31:1086:30:1076:-78.3162,0,-75.95	0/1:70:49,21:49:1745:21:737:-45.326,0,-128.759	0/1:112:67,45:67:2404:45:1616:-111.628,0,-178.26	0/1:26:17,9:17:597:9:324:-21.5901,0,-44.3071	0/1:22:15,7:15:525:7:252:-16.3308,0,-39.0844	1/1:58:0,58:0:0:58:2054:-184.368,-17.4597,0	0/1:124:84,40:84:2986:40:1412:-88.9772,0,-221.67	0/1:106:76,30:76:2732:30:1057:-62.8034,0,-199.767	1/1:70:0,70:0:0:70:2467:-221.283,-21.0721,0	0/1:67:30,37:30:1065:37:1332:-99.8584,0,-73.8149	0/1:75:47,28:47:1673:28:975:-64.8086,0,-118.139	0/1:72:34,38:34:1220:38:1360:-99.9848,0,-84.0842	0/1:53:31,22:31:1116:22:788:-54.9026,0,-79.0236	1/1:57:0,57:0:0:57:2044:-183.643,-17.1587,0	0/1:52:27,25:27:972:25:881:-63.7276,0,-68.9661	1/1:22:0,22:0:0:22:792:-71.1382,-6.62266,0	0/1:36:20,16:20:716:16:576:-41.0912,0,-51.6203	1/1:49:1,48:1:36:48:1724:-150.368,-11.177,0	1/1:95:0,95:0:0:95:3386:-303.903,-28.5979,0	0/1:107:53,54:53:1904:54:1925:-140.692,0,-132.272	1/1:38:0,38:0:0:38:1359:-122.335,-11.4391,0	1/1:41:0,41:0:0:41:1476:-132.855,-12.3422,0	0/1:70:49,21:49:1760:21:752:-46.6157,0,-130.92	0/1:69:59,10:59:2120:10:356:-11.5188,0,-161.704	0/1:174:111,63:111:3951:63:2256:-150.786,0,-296.249	1/1:143:0,143:0:0:143:5093:-455.718,-43.0473,0	1/1:41:0,41:0:0:41:1402:-125.605,-12.3422,0	0/1:137:81,56:81:2904:56:1989:-137.786,0,-217.33	0/1:102:74,28:74:2660:28:998:-59.015,0,-202.499	0/1:82:44,38:44:1576:38:1368:-98.5192,0,-114.154	0/1:5:3,2:3:108:2:72:-5.15912,0,-8.31605	0/1:2:1,1:1:36:1:36:-2.98936,0,-2.91895	1/1:3:0,3:0:0:3:108:-10.0422,-0.90309,0	0/1:7:4,3:4:144:3:108:-7.71063,0,-10.4411	0/0:4:4,0:4:144:0:0:0,-1.20412,-11.8544	0/1:182:99,83:99:3541:83:2960:-210.658,0,-258.675	1/1:54:2,52:2:72:52:1814:-157.155,-10.4141,0	1/1:48:0,48:0:0:48:1698:-152.489,-14.4494,0	0/1:2:1,1:1:36:1:36:-2.98936,0,-2.91895	1/1:99:0,99:0:0:99:3509:-314.266,-29.802,0	1/1:28:0,28:0:0:28:984:-88.5876,-8.42884,0	1/1:40:0,40:0:0:40:1440:-129.032,-12.0412,0	1/1:54:0,54:0:0:54:1925:-173.067,-16.2556,0	0/1:46:20,26:20:716:26:917:-68.9167,0,-49.5097	0/1:88:71,17:71:2552:17:577:-25.0436,0,-199.14	1/1:46:0,46:0:0:46:1637:-146.611,-13.8474,0	1/1:52:1,51:1:36:51:1813:-159.316,-12.105,0	1/1:59:0,59:0:0:59:2120:-190.626,-17.7608,0	0/1:100:55,45:55:1980:45:1597:-113.653,0,-143.736	0/1:115:80,35:80:2876:35:1256:-78.4749,0,-218.589	0/1:4:1,3:1:36:3:108:-8.86067,0,-2.25037	0/1:274:191,83:191:6808:83:2932:-180.499,0,-507.097	0/1:51:31,20:31:1116:20:704:-48.2592,0,-84.1981	0/1:7:4,3:4:144:3:108:-7.93494,0,-10.1108	0/1:95:62,33:62:2217:33:1158:-75.5056,0,-165.801	1/1:24:0,24:0:0:24:860:-77.4263,-7.22472,0	1/1:4:0,4:0:0:4:144:-13.2871,-1.20412,0	1/1:7:0,7:0:0:7:252:-22.8996,-2.10721,0	1/1:41:0,41:0:0:41:1453:-130.573,-12.3422,0	0/1:93:50,43:50:1800:43:1520:-108.775,0,-129.701	.:.:.:.:.:.:.:.	1/1:108:0,107:0:0:107:3776:-339.416,-32.2102,0	1/1:109:1,108:1:36:108:3828:-339.046,-29.2638,0	0/1:32:6,26:6:216:26:936:-74.4976,0,-9.73259	0/1:47:30,17:30:1065:17:593:-39.1877,0,-79.6211	0/1:95:70,25:70:2512:25:896:-52.2526,0,-193.136	1/1:74:0,74:0:0:74:2648:-238.106,-22.2762,0	1/1:58:0,58:0:0:58:2064:-185.461,-17.4597,0	1/1:46:0,46:0:0:46:1648:-147.505,-13.8474,0	0/1:29:15,14:15:532:14:504:-36.9465,0,-38.4916	0/1:21:8,13:8:288:13:468:-36.0943,0,-19.1545	1/1:84:0,84:0:0:84:2990:-267.456,-25.2865,0	1/1:62:0,62:0:0:62:2198:-196.86,-18.6639,0	0/1:157:91,66:91:3234:66:2376:-165.786,0,-234.467	1/1:101:1,100:1:36:100:3596:-320.406,-27.8453,0	1/1:37:0,37:0:0:37:1328:-119.148,-11.1381,0	0/1:94:45,49:45:1601:49:1725:-126.382,0,-109.281	0/1:3:1,2:1:36:2:72:-5.91123,0,-2.57761	1/1:56:0,56:0:0:56:1997:-178.6,-16.8577,0	0/1:61:47,14:47:1688:14:504:-26.8825,0,-125.957	1/1:99:0,99:0:0:99:3560:-319.546,-29.802,0	1/1:46:0,46:0:0:46:1643:-146.941,-13.8474,0	0/1:65:44,20:44:1569:20:720:-45.5686,0,-115.551	1/1:43:0,43:0:0:43:1536:-138.275,-12.9443,0	1/1:113:0,113:0:0:113:4056:-364.621,-34.0164,0	0/0:17:16,1:16:561:1:36:0,-1.53103,-44.0685	1/1:58:0,58:0:0:58:2088:-186.628,-17.4597,0	0/1:62:37,25:37:1313:25:891:-60.7782,0,-95.4752	0/1:45:21,24:21:741:24:860:-63.998,0,-51.5746	0/1:110:52,57:52:1872:57:2018:-146.33,0,-127.841	0/1:69:44,25:44:1580:25:892:-59.6327,0,-117.958	1/1:117:0,117:0:0:117:4159:-372.204,-35.2205,0	1/1:104:0,104:0:0:104:3726:-334.757,-31.3071,0
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chr12	24298790	.	C	T	61032.3	PASS	AB=0.498964;ABP=3.07777;AC=50;AF=0.265957;AN=188;AO=3632;CIGAR=1X;DP=13856;DPB=13856;DPRA=1.24082;EPP=7889.8;EPPR=22184.6;GTI=0;LEN=1;MEANALT=1.06667;MQM=59.9816;MQMR=59.9945;NS=94;NUMALT=1;ODDS=4.72413;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=129654;QR=363084;RO=10219;RPL=3632;RPP=7889.8;RPPR=22184.6;RPR=0;RUN=1;SAF=3632;SAP=7889.8;SAR=0;SRF=10219;SRP=22193.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/1:200:106,93:106:3760:93:3295:-236.631,0,-278.464	0/1:90:61,29:61:2149:29:1028:-65.7403,0,-166.583	0/1:402:168,234:168:5930:234:8340:-629.592,0,-412.796	0/1:132:51,81:51:1798:81:2892:-220.772,0,-122.365	0/1:159:62,97:62:2212:97:3472:-264.828,0,-151.481	0/0:185:185,0:185:6614:0:0:0,-55.6905,-595.339	0/1:364:179,185:179:6362:185:6571:-481.893,0,-463.1	0/1:141:51,90:51:1796:90:3210:-246.676,0,-119.474	0/0:169:168,1:168:6019:1:36:0,-47.2758,-538.215	0/1:62:34,28:34:1206:28:990:-70.7504,0,-90.1806	0/1:68:35,33:35:1227:33:1184:-86.3983,0,-90.263	0/1:77:27,50:27:940:50:1790:-138.203,0,-61.7315	0/1:98:57,41:57:2036:41:1464:-102.555,0,-154.011	0/0:66:66,0:66:2341:0:0:0,-19.868,-210.946	0/1:64:38,25:38:1355:25:900:-61.9963,0,-102.925	0/0:91:91,0:91:3225:0:0:0,-27.3937,-290.473	0/1:81:41,40:41:1453:40:1423:-103.983,0,-106.681	0/0:36:36,0:36:1275:0:0:0,-10.8371,-115.052	0/0:317:317,0:317:11272:0:0:0,-95.4265,-1014.37	0/1:264:141,123:141:5040:123:4384:-315.261,0,-374.275	0/0:218:218,0:218:7764:0:0:0,-65.6245,-698.792	0/0:100:99,1:99:3505:1:36:0,-26.5047,-312.063	0/1:157:78,79:78:2769:79:2802:-205.156,0,-202.189	0/1:145:88,57:88:3127:57:2048:-140.942,0,-238.005	0/1:612:304,307:304:10770:307:10992:-805.032,0,-785.073	0/0:306:305,1:305:10874:1:36:0,-88.5169,-974.965	0/0:37:37,0:37:1299:0:0:0,-11.1381,-117.21	0/1:306:186,120:186:6553:120:4302:-295.24,0,-497.741	0/1:375:184,191:184:6526:191:6842:-502.961,0,-474.541	0/1:159:80,79:80:2819:79:2835:-207.524,0,-206.085	0/1:13:6,7:6:207:7:252:-19.1156,0,-15.0535	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:7:7,0:7:243:0:0:0,-2.10721,-22.2075	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:5:3,2:3:104:2:72:-5.33157,0,-8.19766	0/1:202:116,86:116:4126:86:3088:-217.339,0,-310.718	0/0:292:291,1:291:10367:1:27:0,-85.201,-930.252	0/0:53:53,0:53:1876:0:0:0,-15.9546,-169.116	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/0:250:250,0:250:8830:0:0:0,-75.2575,-794.695	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/0:160:160,0:160:5697:0:0:0,-48.1648,-512.85	0/0:69:69,0:69:2448:0:0:0,-20.7711,-220.576	0/1:64:31,33:31:1104:33:1167:-86.0705,0,-80.4047	0/1:160:76,84:76:2713:84:3011:-223.055,0,-196.247	0/0:161:160,0:160:5672:0:0:0,-48.1648,-510.241	0/0:310:308,2:308:10959:2:72:0,-86.4826,-979.358	0/0:179:179,0:179:6370:0:0:0,-53.8844,-573.261	0/1:223:114,109:114:4042:109:3885:-282.714,0,-296.838	0/1:316:145,171:145:5151:171:6113:-455.144,0,-368.607	0/1:28:11,17:11:396:17:612:-46.9846,0,-27.5539	0/1:220:137,83:137:4907:83:2976:-201.846,0,-375.554	0/1:85:48,37:48:1713:37:1317:-93.2431,0,-128.866	0/1:26:9,17:9:320:17:608:-47.2252,0,-21.3156	0/1:170:118,52:118:4199:52:1859:-116.414,0,-326.918	0/0:48:48,0:48:1707:0:0:0,-14.4494,-153.915	0/1:20:13,7:13:468:7:252:-17.0084,0,-36.439	0/0:33:33,0:33:1179:0:0:0,-9.93399,-106.417	0/0:181:181,0:181:6403:0:0:0,-54.4864,-576.362	0/1:131:78,53:78:2760:53:1908:-132.563,0,-209.206	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:460:460,0:460:16344:0:0:0,-138.474,-1470.64	0/0:371:366,5:366:13038:5:180:0,-95.1301,-1156.68	0/0:139:134,4:134:4759:4:144:0,-28.5883,-415.155	0/1:101:57,44:57:2018:44:1544:-108.845,0,-151.488	0/1:231:124,107:124:4389:107:3790:-271.76,0,-325.646	0/0:156:154,2:154:5473:2:72:0,-40.124,-485.861	0/0:29:29,0:29:1014:0:0:0,-8.72987,-91.57	0/0:131:131,0:131:4648:0:0:0,-39.4349,-418.484	0/1:130:62,68:62:2192:68:2435:-180.271,0,-158.413	0/1:42:14,28:14:495:28:996:-77.3116,0,-32.2398	0/0:114:114,0:114:4057:0:0:0,-34.3174,-365.317	0/0:99:99,0:99:3518:0:0:0,-29.802,-316.831	0/1:289:143,146:143:5101:146:5174:-378.747,0,-372.236	0/0:296:296,0:296:10524:0:0:0,-89.1049,-947.081	0/0:199:198,1:198:7022:1:36:0,-56.3067,-628.449	0/1:216:97,119:97:3476:119:4251:-317.747,0,-248.029	0/1:13:8,5:8:284:5:180:-12.6387,0,-21.99	0/0:229:228,1:228:8068:1:36:0,-65.3376,-722.545	0/1:195:85,110:85:3027:110:3932:-295.372,0,-213.96	0/0:254:254,0:254:9049:0:0:0,-76.4616,-814.389	0/0:115:115,0:115:4080:0:0:0,-34.6184,-367.387	0/1:79:29,50:29:1040:50:1784:-137.061,0,-70.133	0/0:97:97,0:97:3458:0:0:0,-29.1999,-311.432	0/0:156:156,0:156:5551:0:0:0,-46.9607,-499.718	0/1:37:18,19:18:644:19:684:-50.7522,0,-47.1525	0/0:70:70,0:70:2467:0:0:0,-21.0721,-222.282	0/1:83:33,50:33:1180:50:1796:-136.937,0,-81.5226	0/1:33:14,19:14:500:19:671:-50.7818,0,-35.4022	0/1:83:35,48:35:1226:48:1706:-128.839,0,-85.6568	0/1:76:25,51:25:888:51:1828:-141.923,0,-57.3607	0/0:222:222,0:222:7926:0:0:0,-66.8287,-713.366	0/0:104:104,0:104:3693:0:0:0,-31.3071,-332.573
chr12	24351374	.	A	G	119669	PASS	AB=0.507278;ABP=4.71704;AC=140;AF=0.744681;AN=188;AO=5757;CIGAR=1X;DP=7617;DPB=7617;DPRA=81.8925;EPP=12426.1;EPPR=4022.41;GTI=2;LEN=1;MEANALT=1.05376;MQM=59.4351;MQMR=54.1925;NS=94;NUMALT=1;ODDS=0.52133;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=203890;QR=66392;RO=1855;RPL=5748;RPP=12426.1;RPPR=4022.41;RPR=9;RUN=1;SAF=5757;SAP=12504.2;SAR=0;SRF=1855;SRP=4031.09;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:28:0,28:0:0:28:991:-89.4898,-8.42884,0	0/1:112:51,61:51:1824:61:2176:-162.377,0,-128.989	0/1:121:63,58:63:2256:58:2015:-145.075,0,-166.298	0/1:187:96,91:96:3416:91:3217:-233.432,0,-250.704	0/1:44:25,19:25:896:19:667:-47.0991,0,-67.4771	0/1:35:13,22:13:468:22:775:-59.527,0,-31.8	1/1:143:0,143:0:0:143:5036:-453.355,-43.0473,0	0/1:125:59,66:59:2112:66:2331:-172.372,0,-151.419	0/1:44:23,21:23:816:21:730:-52.7659,0,-60.3239	1/1:105:0,105:0:0:105:3725:-335.105,-31.6082,0	0/1:40:19,21:19:684:21:743:-55.1474,0,-49.7555	0/1:37:20,17:20:720:17:593:-42.5566,0,-53.6389	0/1:59:21,38:21:756:38:1321:-101.425,0,-49.9508	0/1:75:39,36:39:1382:36:1266:-91.6639,0,-101.898	1/1:41:0,41:0:0:41:1441:-129.965,-12.3422,0	0/1:44:16,28:16:576:28:991:-76.0758,0,-38.73	1/1:77:0,77:0:0:77:2700:-243.078,-23.1793,0	0/1:38:21,17:21:752:17:604:-43.2377,0,-56.2065	1/1:28:0,28:0:0:28:989:-89.3138,-8.42884,0	1/1:213:0,213:0:0:213:7542:-678.233,-64.1194,0	0/1:124:76,48:76:2728:48:1716:-117.398,0,-207.937	1/1:156:0,156:0:0:156:5530:-497.499,-46.9607,0	1/1:34:0,34:0:0:34:1208:-109.019,-10.235,0	0/1:107:61,46:61:2184:46:1623:-114.108,0,-164.086	0/1:42:23,19:23:820:19:670:-47.9727,0,-61.3726	0/1:257:121,136:121:4344:136:4833:-357.743,0,-313.192	1/1:173:0,172:0:0:172:6113:-548.612,-51.7772,0	1/1:17:0,17:0:0:17:612:-55.3911,-5.11751,0	0/1:239:119,120:119:4264:120:4269:-312.279,0,-311.641	0/1:175:79,96:79:2820:96:3409:-254.331,0,-200.825	0/1:105:42,63:42:1512:63:2240:-169.801,0,-104.216	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59317	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:2:1,1:1:36:1:27:-2.09772,0,-2.98717	1/1:2:0,2:0:0:2:72:-6.82813,-0.60206,0	0/1:122:61,61:61:2196:61:2152:-156.841,0,-160.696	1/1:223:1,221:1:36:221:7868:-703.88,-63.5951,0	1/1:48:0,48:0:0:48:1695:-152.748,-14.4494,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:242:0,242:0:0:242:8590:-772.215,-72.8493,0	1/1:25:0,25:0:0:25:896:-80.9511,-7.52575,0	1/1:153:0,153:0:0:153:5404:-486.389,-46.0576,0	1/1:29:0,29:0:0:29:1013:-91.4738,-8.72987,0	0/1:49:32,17:32:1148:17:612:-40.663,0,-88.7173	0/1:63:27,36:27:972:36:1266:-95.2529,0,-68.7532	1/1:112:0,112:0:0:112:4003:-359.526,-33.7154,0	1/1:123:5,117:5:176:117:4141:-356.711,-20.9384,0	1/1:120:4,116:4:144:116:4128:-358.304,-22.8196,0	0/1:112:47,65:47:1680:65:2328:-176.052,0,-117.577	0/1:111:66,45:66:2355:45:1572:-108.276,0,-177.991	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1319	0/1:137:73,64:73:2624:64:2276:-163.825,0,-194.105	0/1:42:13,29:13:468:29:1040:-81.2702,0,-29.8045	0/1:11:3,8:3:108:8:288:-22.9478,0,-6.73274	0/1:100:52,47:52:1864:47:1675:-120.779,0,-136.944	1/1:12:0,12:0:0:12:424:-38.4941,-3.61236,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39315	1/1:10:0,10:0:0:10:360:-32.7373,-3.0103,0	1/1:68:0,68:0:0:68:2405:-216.66,-20.47,0	0/1:94:50,44:50:1791:44:1510:-107.887,0,-132.591	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:161:4,157:4:144:157:5591:-489.863,-35.1559,0	1/1:137:0,137:0:0:137:4869:-437.623,-41.2411,0	1/1:78:7,71:7:252:71:2515:-203.593,-0.485636,0	0/1:73:40,33:40:1436:33:1167:-83.3589,0,-107.424	0/1:108:50,58:50:1783:58:2060:-153.156,0,-128.126	1/1:129:4,125:4:144:125:4443:-386.413,-25.5289,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:92:0,92:0:0:92:3273:-294.717,-27.6948,0	0/1:58:25,33:25:881:33:1146:-85.9799,0,-62.0695	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26415	1/1:123:0,123:0:0:123:4374:-393.704,-37.0267,0	1/1:55:0,55:0:0:55:1945:-175.253,-16.5567,0	0/1:133:71,62:71:2527:62:2200:-158.207,0,-186.938	1/1:130:0,130:0:0:130:4610:-415.03,-39.1339,0	1/1:104:0,104:0:0:104:3675:-330.884,-31.3071,0	0/1:77:34,43:34:1220:43:1520:-113.751,0,-86.3815	1/1:4:0,4:0:0:4:140:-12.7105,-1.20412,0	1/1:106:0,106:0:0:106:3786:-340.924,-31.9092,0	0/1:161:74,87:74:2636:87:3107:-231.389,0,-187.895	1/1:125:1,124:1:36:124:4392:-391.618,-34.0331,0	1/1:105:0,105:0:0:105:3706:-333.679,-31.6082,0	0/1:41:18,23:18:648:23:820:-61.7779,0,-46.2628	1/1:42:0,42:0:0:42:1499:-135.199,-12.6433,0	1/1:91:1,90:1:36:90:3165:-281.344,-23.7981,0	0/1:20:13,7:13:449:7:252:-17.0084,0,-34.623	1/1:40:0,40:0:0:40:1360:-122.02,-12.0412,0	0/1:42:18,24:18:648:24:851:-64.258,0,-45.6397	0/1:25:11,14:11:396:14:496:-37.4485,0,-28.3968	0/1:62:29,33:29:1044:33:1139:-84.1183,0,-75.4646	0/1:39:23,16:23:824:16:576:-40.414,0,-62.494	1/1:105:0,104:0:0:104:3669:-330.042,-31.3071,0	1/1:73:0,73:0:0:73:2547:-229.474,-21.9752,0
chr12	24351380	.	CCC	CCT,ACT	161955	PASS	AB=0.504914,0.493493;ABP=3.79987,4.39508;AC=139,49;AF=0.739362,0.260638;AN=188;AO=5768,1888;CIGAR=2M1X,1X1M1X;DP=7673;DPB=7673;DPRA=82.4946,1.24551;EPP=12528.1,4102.75;EPPR=20.3821;GTI=2;LEN=1,3;MEANALT=1.70968,2.10345;MQM=59.4508,54.1139;MQMR=58.75;NS=94;NUMALT=2;ODDS=0.0341355;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=205410,65788;QR=275;RO=8;RPL=5768,1888;RPP=12528.1,4102.75;RPPR=20.3821;RPR=0,0;RUN=1,1;SAF=5768,1888;SAP=12528.1,4102.75;SAR=0,0;SRF=8;SRP=20.3821;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:27:0,27,0:0:0:27,0:968,0:-87.4374,-8.12781,0,-87.4374,-8.12781,-87.4374	1/2:114:0,62,52:0:0:62,52:2204,1786:-323.296,-143.692,-125.028,-179.95,0,-164.297	1/2:124:0,60,62:0:0:60,62:2156,2150:-350.198,-174.366,-156.304,-175.899,0,-157.235	1/2:185:0,89,96:0:0:89,96:3151,3355:-529.493,-272.835,-246.044,-257.009,0,-228.11	1/2:43:0,18,25:0:0:18,25:648,882:-124.801,-71.9421,-66.5236,-53.2149,0,-45.6892	1/2:35:0,21,14:0:0:21,14:756,502:-102.863,-41.1761,-34.8545,-62.0456,0,-57.8312	1/1:139:0,139,0:0:0:139,0:4956,0:-446.126,-41.8432,0,-446.126,-41.8432,-446.126	1/2:127:0,67,60:0:0:67,60:2386,2113:-365.64,-171.21,-151.041,-194.783,0,-176.721	1/2:42:0,19,23:0:0:19,23:680,785:-119.322,-63.8708,-58.1512,-55.8014,0,-48.8777	1/1:106:0,106,0:0:0:106,0:3790,0:-340.948,-31.9092,0,-340.948,-31.9092,-340.948	1/2:39:0,20,19:0:0:20,19:720,653:-112.044,-53.2914,-47.2708,-59.1035,0,-53.3839	1/2:38:0,18,20:0:0:18,20:635,696:-108.383,-56.674,-51.2555,-52.0584,0,-46.0378	1/2:60:0,39,21:0:0:39,21:1372,722:-170.376,-58.7305,-46.9903,-111.991,0,-105.669	1/2:75:0,36,39:0:0:36,39:1292,1388:-218.665,-113.276,-102.439,-105.747,0,-94.0065	1/1:40:0,40,0:0:0:40,0:1432,0:-129.155,-12.0412,0,-129.155,-12.0412,-129.155	1/2:44:0,28,16:0:0:28,16:985,562:-126.023,-45.9021,-37.4733,-80.4715,0,-75.655	1/1:77:0,77,0:0:0:77,0:2736,0:-246.332,-23.1793,0,-246.332,-23.1793,-246.332	1/2:39:0,18,21:0:0:18,21:639,750:-113.201,-61.15,-55.7314,-52.4059,0,-46.0843	1/1:29:0,29,0:0:0:29,0:1040,0:-93.9062,-8.72987,0,-93.9062,-8.72987,-93.9062	1/1:213:0,211,2:0:0:211,2:7521,72:-675.73,-63.5173,0,-669.86,-57.2876,-669.258	1/2:124:0,48,76:0:0:48,76:1705,2634:-353.028,-214.096,-199.646,-139.284,0,-116.406	1/1:155:0,155,0:0:0:155,0:5530,0:-497.549,-46.6597,0,-497.549,-46.6597,-497.549	1/1:33:0,33,0:0:0:33,0:1171,0:-105.686,-9.93399,0,-105.686,-9.93399,-105.686	1/2:109:0,47,62:0:0:47,62:1676,2194:-315.116,-178.539,-164.391,-136.932,0,-118.268	1/2:43:0,19,24:0:0:19,24:674,784:-118.466,-63.5507,-57.8311,-55.2575,0,-48.0328	1/2:260:0,136,124:0:0:136,124:4834,4262:-739.723,-345.935,-304.995,-394.138,0,-356.81	1/1:177:0,177,0:0:0:177,0:6292,0:-564.93,-53.2823,0,-564.93,-53.2823,-564.93	1/1:17:0,17,0:0:0:17,0:608,0:-55.0297,-5.11751,0,-55.0297,-5.11751,-55.0297	1/2:245:0,122,123:0:0:122,123:4335,4294:-702.355,-349.27,-312.544,-353.436,0,-316.41	1/2:180:0,101,78:0:0:101,78:3613,2713:-514.507,-220.15,-189.745,-294.428,0,-270.948	1/2:101:0,59,42:0:0:59,42:2103,1477:-291.784,-120.386,-102.626,-171.751,0,-159.108	2/2:1:0,0,1:0:0:0,1:0,36:-3.59317,-3.59317,-3.59317,-0.30103,-0.30103,0	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:2:0,1,1:0:0:1,1:36,34:-6.03982,-3.09214,-2.79111,-3.29724,0,-2.99621	1/1:2:0,2,0:0:0:2,0:72,0:-6.82813,-0.60206,0,-6.82813,-0.60206,-6.82813	1/2:128:0,66,62:0:0:66,62:2339,2188:-368.11,-178.25,-158.382,-190.213,0,-171.549	1/1:225:0,224,1:0:0:224,1:7969,36:-716.384,-67.4307,0,-713.451,-64.1386,-713.15	1/1:48:0,48,0:0:0:48,0:1716,0:-154.717,-14.4494,0,-154.717,-14.4494,-154.717	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:243:1,241,0:1:34:241,0:8593,0:-769.045,-69.8,0,-769.346,-72.5482,-772.104	1/1:25:0,25,0:0:0:25,0:887,0:-80.1389,-7.52575,0,-80.1389,-7.52575,-80.1389	1/1:154:0,154,0:0:0:154,0:5458,0:-491.278,-46.3586,0,-491.278,-46.3586,-491.278	1/1:27:0,27,0:0:0:27,0:946,0:-85.4529,-8.12781,0,-85.4529,-8.12781,-85.4529	1/2:49:0,16,33:0:0:16,33:576,1138:-139.645,-92.641,-87.8245,-47.3585,0,-37.4245	1/2:63:0,36,27:0:0:36,27:1292,960:-183.845,-78.5113,-67.6742,-105.691,0,-97.5628	1/1:113:0,113,0:0:0:113,0:4040,0:-361.923,-34.0164,0,-361.923,-34.0164,-361.923	1/1:123:0,118,5:0:0:118,5:4197,180:-377.536,-35.5215,0,-362.889,-20.5154,-361.383	1/1:119:0,115,4:0:0:115,4:4063,139:-365.45,-34.6185,0,-354.157,-22.9783,-352.953	1/2:115:0,66,49:0:0:66,49:2372,1737:-335.17,-141.667,-121.799,-193.859,0,-179.109	1/2:112:0,44,68:0:0:44,68:1563,2377:-320.3,-192.955,-179.709,-127.698,0,-107.228	1/2:8:0,3,5:0:0:3,5:108,175:-23.3938,-14.5777,-13.6746,-9.17208,0,-7.66693	1/2:139:0,64,75:0:0:64,75:2288,2638:-400.625,-214.099,-194.834,-186.879,0,-164.302	1/2:44:0,31,13:0:0:31,13:1114,464:-129.008,-38.1731,-28.8412,-91.1924,0,-87.279	1/2:12:0,9,3:0:0:9,3:294,97:-31.8651,-8.13058,-5.42131,-24.0581,0,-23.155	1/2:100:0,45,55:0:0:45,55:1592,1922:-284.65,-154.984,-141.437,-130.016,0,-113.46	1/1:11:0,11,0:0:0:11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chr12	24351472	.	T	A	29727.2	PASS	AB=0.52925;ABP=27.2729;AC=51;AF=0.271277;AN=188;AO=1734;CIGAR=1X;DP=5771;DPB=5771;DPRA=1.16461;EPP=3750.99;EPPR=8708.55;GTI=2;LEN=1;MEANALT=1;MQM=59.9769;MQMR=59.6019;NS=94;NUMALT=1;ODDS=0.841383;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=62133;QR=144333;RO=4037;RPL=2;RPP=3750.99;RPPR=8708.55;RPR=1732;RUN=1;SAF=0;SAP=3768.34;SAR=1734;SRF=0;SRP=8769.24;SRR=4037;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.762	0/1:48:23,25:23:824:25:892:-66.1502,0,-60.0339	0/1:147:62,85:62:2202:85:3048:-230.298,0,-154.19	0/1:159:66,93:66:2361:93:3336:-252.593,0,-164.876	0/1:27:9,18:9:324:18:648:-50.5241,0,-21.3776	0/1:17:10,7:10:352:7:252:-17.9114,0,-26.8924	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.501	0/1:79:34,45:34:1197:45:1612:-121.589,0,-84.2071	0/1:23:10,13:10:348:13:464:-35.1738,0,-24.7281	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.577	0/1:35:19,16:19:680:16:572:-41.2774,0,-50.4976	0/1:64:33,31:33:1184:31:1116:-81.4858,0,-87.569	0/1:68:39,29:39:1404:29:1020:-71.6399,0,-106.15	0/1:70:28,42:28:1004:42:1504:-114.538,0,-69.5854	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.455	0/1:45:18,27:18:644:27:972:-74.2516,0,-44.4208	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:20:10,10:10:360:10:360:-26.7237,0,-26.7072	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6972	0/0:97:97,0:97:3465:0:0:0,-29.1999,-312.013	0/1:88:36,52:36:1292:52:1864:-141.549,0,-89.0579	0/0:122:122,0:122:4368:0:0:0,-36.7257,-393.23	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/1:63:39,24:39:1400:24:856:-58.3962,0,-107.325	0/1:57:34,23:34:1216:23:828:-57.6854,0,-92.518	0/1:171:93,78:93:3340:78:2793:-200.133,0,-249.336	0/0:151:151,0:151:5417:0:0:0,-45.4555,-487.497	0/0:14:14,0:14:504:0:0:0,-4.21442,-45.6981	0/1:254:111,143:111:3947:143:5117:-384.2,0,-278.896	0/1:80:30,50:30:1072:50:1796:-137.84,0,-72.6962	0/1:46:18,28:18:629:28:998:-76.2875,0,-42.8933	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:10:4,6:4:144:6:216:-16.7802,0,-10.3033	0/1:122:57,65:57:2048:65:2336:-173.774,0,-147.857	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.033	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2666	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/0:115:115,0:115:4078:0:0:0,-34.6184,-366.812	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:83:83,0:83:2961:0:0:0,-24.9855,-266.692	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.7553	0/1:37:20,17:20:720:17:612:-44.2753,0,-53.9883	0/1:78:37,41:37:1332:41:1476:-109.656,0,-96.6984	0/0:82:81,1:81:2912:1:36:0,-21.0862,-258.43	0/0:98:98,0:98:3504:0:0:0,-29.5009,-314.194	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.088	0/1:83:41,42:41:1468:42:1512:-111.389,0,-107.426	0/1:113:50,63:50:1792:63:2264:-170.004,0,-127.539	0/1:7:4,3:4:144:3:104:-7.5956,0,-11.204	0/1:126:58,68:58:2057:68:2448:-182.644,0,-147.462	0/1:62:28,34:28:1004:34:1208:-90.3622,0,-72.0097	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:94:53,41:53:1892:41:1476:-104.839,0,-142.26	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.242	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9541	0/0:57:57,0:57:2040:0:0:0,-17.1587,-183.863	0/1:95:42,53:42:1508:53:1896:-142.32,0,-107.223	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:95:95,0:95:3351:0:0:0,-28.5978,-301.802	0/0:106:105,1:105:3719:1:36:0,-28.3109,-331.296	0/1:61:54,7:54:1924:7:252:-4.66613,0,-154.998	0/1:63:23,40:23:816:40:1408:-108.05,0,-54.7959	0/1:83:38,45:38:1345:45:1620:-121.104,0,-96.358	0/0:78:75,3:75:2677:3:108:0,-13.4052,-231.095	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:33:33,0:33:1165:0:0:0,-9.93399,-105.139	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6098	0/1:22:6,16:6:212:16:562:-44.2859,0,-12.7964	0/0:89:89,0:89:3173:0:0:0,-26.7917,-285.769	0/0:55:55,0:55:1964:0:0:0,-16.5566,-177.013	0/1:101:52,49:52:1868:49:1756:-127.92,0,-137.926	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.838	0/0:123:123,0:123:4405:0:0:0,-37.0267,-396.264	0/1:77:29,48:29:1036:48:1720:-131.906,0,-70.3746	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.361	0/1:109:42,67:42:1500:67:2404:-183.801,0,-102.446	0/0:136:136,0:136:4843:0:0:0,-40.9401,-435.29	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.023	0/1:50:22,28:22:784:28:1004:-75.6244,0,-55.8315	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0649	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.766	0/1:13:10,3:10:360:3:108:-6.16178,0,-28.83	0/0:56:55,1:55:1968:1:36:0,-13.2594,-173.746	0/1:59:36,23:36:1281:23:824:-56.7225,0,-97.8051	0/1:35:15,20:15:536:20:716:-54.2317,0,-38.0388	0/1:88:44,44:44:1580:44:1575:-115.55,0,-115.975	0/1:35:11,24:11:396:24:860:-67.1858,0,-25.4467	0/0:89:89,0:89:3200:0:0:0,-26.7917,-288.213	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.701
chr12	24351488	.	G	A	82259.1	PASS	AB=0.468006;ABP=31.7724;AC=137;AF=0.728723;AN=188;AO=3991;CIGAR=1X;DP=5724;DPB=5724;DPRA=0;EPP=8617.32;EPPR=3740.16;GTI=2;LEN=1;MEANALT=1;MQM=59.6161;MQMR=59.9769;NS=94;NUMALT=1;ODDS=0.640312;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=142807;QR=61822;RO=1733;RPL=3985;RPP=8617.32;RPPR=3740.16;RPR=6;RUN=1;SAF=0;SAP=8669.36;SAR=3991;SRF=0;SRP=3766.17;SRR=1733;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1504:-135.641,-12.6433,0	0/1:48:26,22:26:936:22:779:-55.9826,0,-70.11	0/1:147:85,62:85:3036:62:2212:-155.085,0,-229.219	0/1:162:95,67:95:3395:67:2408:-168.204,0,-256.998	0/1:27:18,9:18:644:9:324:-21.3776,0,-50.1628	0/1:17:7,10:7:244:10:360:-27.6186,0,-17.1819	1/1:53:0,53:0:0:53:1904:-171.625,-15.9546,0	0/1:80:46,34:46:1643:34:1209:-84.9868,0,-124.075	0/1:23:13,10:13:468:10:360:-25.8124,0,-35.536	1/1:39:0,39:0:0:39:1396:-125.937,-11.7402,0	0/1:36:17,19:17:599:19:663:-48.9607,0,-43.401	0/1:64:32,32:32:1144:32:1152:-84.7045,0,-84.0036	0/1:68:28,40:28:1000:40:1432:-108.679,0,-69.8453	0/1:68:42,26:42:1495:26:924:-62.9793,0,-114.329	1/1:36:0,36:0:0:36:1292:-116.577,-10.8371,0	0/1:44:27,17:27:964:17:593:-40.4296,0,-73.8315	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:18:10,8:10:360:8:288:-20.8406,0,-27.3258	1/1:15:0,15:0:0:15:540:-48.9356,-4.51545,0	1/1:100:0,100:0:0:100:3592:-323.068,-30.103,0	0/1:87:53,34:53:1900:34:1224:-84.2636,0,-145.088	1/1:122:0,122:0:0:122:4373:-393.677,-36.7257,0	1/1:20:0,20:0:0:20:705:-63.7728,-6.0206,0	0/1:62:25,37:25:900:37:1324:-100.784,0,-62.6572	0/1:56:23,33:23:820:33:1184:-89.9691,0,-57.2648	0/1:172:80,92:80:2856:92:3289:-244.446,0,-205.501	1/1:152:0,152:0:0:152:5426:-488.394,-45.7566,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:251:140,111:140:5016:111:3972:-281.996,0,-376.005	0/1:82:51,31:51:1820:31:1116:-76.0534,0,-139.397	0/1:45:28,17:28:1000:17:597:-40.4998,0,-76.769	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:11:3,8:3:108:8:288:-22.9561,0,-6.76384	0/1:10:6,4:6:216:4:140:-9.93428,0,-16.7802	0/1:120:64,56:64:2271:56:2012:-145.221,0,-168.529	1/1:95:0,95:0:0:95:3390:-305.298,-28.5979,0	1/1:31:0,31:0:0:31:1116:-100.744,-9.33193,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	1/1:112:0,112:0:0:112:3996:-359.564,-33.7154,0	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:80:0,80:0:0:80:2876:-259.038,-24.0824,0	1/1:24:0,24:0:0:24:864:-77.9713,-7.22472,0	0/1:36:16,20:16:568:20:716:-53.9283,0,-40.6148	0/1:78:41,37:41:1472:37:1328:-96.3383,0,-109.296	1/1:83:1,82:1:36:82:2936:-260.852,-21.3872,0	1/1:95:0,95:0:0:95:3397:-305.436,-28.5979,0	1/1:46:0,46:0:0:46:1656:-149.326,-13.8474,0	0/1:84:42,42:42:1512:42:1508:-110.723,0,-111.088	0/1:110:63,47:63:2260:47:1669:-117.376,0,-170.547	0/1:6:2,4:2:72:4:144:-11.505,0,-5.03054	0/1:124:67,57:67:2400:57:2048:-147.256,0,-178.929	0/1:62:33,29:33:1159:29:1040:-75.2496,0,-85.952	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/1:92:41,51:41:1455:51:1820:-136.382,0,-103.55	1/1:23:0,23:0:0:23:804:-72.6738,-6.92369,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	1/1:12:0,12:0:0:12:418:-37.7915,-3.61236,0	1/1:57:0,57:0:0:57:2044:-184.223,-17.1587,0	0/1:95:54,41:54:1931:41:1463:-102.995,0,-145.468	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:91:1,90:1:36:90:3216:-286.063,-23.7955,0	1/1:103:1,102:1:36:102:3660:-325.988,-27.4078,0	0/1:61:7,54:7:252:54:1932:-155.645,0,-4.66613	0/1:64:40,24:40:1423:24:852:-57.7335,0,-109.101	0/1:77:40,37:40:1413:37:1328:-96.6359,0,-104.286	1/1:77:3,74:3:108:74:2641:-227.855,-13.1041,0	1/1:22:1,21:1:36:21:756:-64.7689,-3.02439,0	1/1:31:0,31:0:0:31:1097:-99.038,-9.33193,0	0/1:38:22,16:22:792:16:576:-40.7349,0,-60.1665	0/1:22:16,6:16:576:6:216:-13.1607,0,-45.5523	1/1:91:0,91:0:0:91:3264:-293.962,-27.3937,0	1/1:55:0,55:0:0:55:1976:-178.101,-16.5567,0	0/1:98:48,50:48:1691:50:1777:-130.64,0,-122.972	1/1:99:0,99:0:0:99:3544:-319.117,-29.802,0	1/1:121:1,120:1:36:120:4304:-383.851,-32.8264,0	0/1:77:48,29:48:1716:29:1036:-70.3746,0,-131.546	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	1/1:44:2,42:2:72:42:1508:-129.169,-6.4086,0	0/1:110:66,44:66:2335:44:1578:-109.157,0,-177.295	1/1:136:0,136:0:0:136:4835:-435.231,-40.9401,0	1/1:48:1,47:1:36:47:1687:-148.498,-10.8512,0	0/1:49:29,20:29:1020:20:716:-50.0163,0,-77.3617	1/1:24:0,24:0:0:24:864:-78.0649,-7.22472,0	1/1:59:0,59:0:0:59:2110:-190.123,-17.7608,0	0/1:13:3,10:3:108:10:360:-28.83,0,-6.16178	1/1:54:1,53:1:36:53:1904:-167.994,-12.6573,0	0/1:58:23,35:23:810:35:1239:-94.3354,0,-55.7593	0/1:35:20,15:20:716:15:540:-38.4005,0,-54.2317	0/1:88:44,44:44:1554:44:1583:-116.246,0,-113.66	0/1:32:21,11:21:748:11:396:-26.3498,0,-58.0123	1/1:86:0,86:0:0:86:3077:-277.15,-25.8886,0	1/1:35:0,35:0:0:35:1260:-113.701,-10.5361,0
chr12	24456158	.	C	T	11146.5	PASS	AB=0.430514;ABP=73.9267;AC=49;AF=0.266304;AN=184;AO=737;CIGAR=1X;DP=3448;DPB=3448;DPRA=0.945647;EPP=1603.39;EPPR=5889.87;GTI=6;LEN=1;MEANALT=1;MQM=59.9294;MQMR=59.9915;NS=92;NUMALT=1;ODDS=1.18387;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=26196;QR=96369;RO=2711;RPL=737;RPP=1603.39;RPPR=5889.87;RPR=0;RUN=1;SAF=0;SAP=1603.39;SAR=737;SRF=0;SRP=5889.87;SRR=2711;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:53:30,23:30:1065:23:801:-56.4521,0,-80.2052	0/1:60:34,26:34:1209:26:924:-65.4159,0,-91.0523	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:47:47,0:47:1658:0:0:0,-14.1484,-149.504	0/1:20:14,6:14:504:6:216:-13.7699,0,-39.6775	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	0/0:48:48,0:48:1701:0:0:0,-14.4494,-153.374	0/1:45:28,17:28:1008:17:608:-41.5057,0,-77.49	0/1:47:27,20:27:972:20:716:-50.6193,0,-73.6495	0/1:42:21,21:21:756:21:752:-55.363,0,-55.724	0/1:50:26,24:26:932:24:852:-61.9489,0,-69.1474	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:56:32,24:32:1133:24:834:-58.5154,0,-85.419	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/1:28:16,12:16:576:12:432:-30.7924,0,-43.7461	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/0:49:49,0:49:1737:0:0:0,-14.7505,-156.613	0/1:58:33,25:33:1169:25:896:-63.5006,0,-88.0555	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:29:29,0:29:1032:0:0:0,-8.72987,-93.1935	0/1:23:13,10:13:453:10:356:-25.4576,0,-34.1759	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/1:58:30,28:30:1061:28:989:-71.8623,0,-78.3396	0/0:87:87,0:87:3113:0:0:0,-26.1896,-280.395	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:74:47,27:47:1643:27:960:-64.4401,0,-125.876	0/1:26:13,13:13:468:13:468:-34.6329,0,-34.6329	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:5:4,1:4:144:1:36:-2.09312,0,-11.8085	0/0:16:16,0:16:576:0:0:0,-4.81648,-52.175	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:8:4,4:4:144:4:144:-10.9054,0,-10.9054	0/1:11:8,3:8:284:3:108:-6.76384,0,-22.592	0/1:129:64,65:64:2266:65:2324:-169.96,0,-165.367	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:51:51,0:51:1836:0:0:0,-15.3525,-165.521	.:.:.:.:.:.:.:.	0/0:53:53,0:53:1855:0:0:0,-15.9546,-167.224	0/0:37:37,0:37:1317:0:0:0,-11.1381,-118.83	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:30:30,0:30:1061:0:0:0,-9.0309,-95.7994	0/1:29:15,14:15:540:14:492:-35.8825,0,-40.2067	0/1:26:21,5:21:756:5:180:-8.72528,0,-60.5404	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:62:62,0:62:2168:0:0:0,-18.6639,-195.38	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/1:78:47,31:47:1662:31:1108:-76.3604,0,-126.383	0/1:28:18,10:18:633:10:348:-23.2263,0,-48.8662	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:27:15,12:15:540:12:432:-31.0934,0,-40.8087	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:29:20,9:20:690:9:324:-20.776,0,-53.6869	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:44:44,0:44:1554:0:0:0,-13.2453,-140.134	0/1:77:39,38:39:1392:38:1353:-98.8891,0,-102.4	.:.:.:.:.:.:.:.	0/0:133:133,0:133:4724:0:0:0,-40.037,-425.315	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.328	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:21:6,15:6:212:15:525:-41.2564,0,-13.1032	0/1:24:11,13:11:396:13:434:-32.1527,0,-28.758	0/0:65:61,4:61:2154:4:144:0,-6.25333,-180.81	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/1:9:8,1:8:273:1:32:-0.490043,0,-22.1909	0/1:41:25,16:25:885:16:572:-39.4712,0,-67.6243	0/1:14:11,3:11:373:3:108:-5.86075,0,-29.6808	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/0:68:68,0:68:2414:0:0:0,-20.47,-217.513	0/1:51:20,31:20:675:31:1101:-84.0458,0,-45.7083	0/0:66:65,1:65:2317:1:36:0,-16.2697,-205.19	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/1:68:45,23:45:1601:23:809:-52.6583,0,-123.908	0/1:14:7,7:7:252:7:237:-17.4446,0,-18.8145	0/0:33:33,0:33:1173:0:0:0,-9.93399,-105.876	0/1:11:7,4:7:252:4:140:-9.63325,0,-19.7176	0/0:50:50,0:50:1781:0:0:0,-15.0515,-160.571	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:40:34,6:34:1205:6:216:-7.74931,0,-96.7127	0/0:17:17,0:17:608:0:0:0,-5.11751,-55.052	0/0:59:59,0:59:2082:0:0:0,-17.7608,-187.647	0/1:8:7,1:7:252:1:36:-1.19004,0,-20.6207	0/0:60:60,0:60:2115:0:0:0,-18.0618,-190.614	0/1:49:27,22:27:972:22:792:-56.8552,0,-73.0474	0/1:25:18,7:18:633:7:252:-15.5032,0,-49.7693	0/1:105:56,49:56:1993:49:1752:-126.356,0,-148.034	0/1:50:21,29:21:718:29:1025:-77.5092,0,-49.8825	0/0:107:107,0:107:3776:0:0:0,-32.2102,-340.036	0/0:59:59,0:59:2109:0:0:0,-17.7608,-190.049
chr12	24462447	.	ATTG	GTTG,GTTA	143701	PASS	AB=0.472943,0.520983;ABP=26.0416,16.8617;AC=138,50;AF=0.734043,0.265957;AN=188;AO=5024,1902;CIGAR=1X3M,1X2M1X;DP=6960;DPB=6961.5;DPRA=74.828,1.23369;EPP=10912.5,4133.15;EPPR=20.3821;GTI=1;LEN=1,4;MEANALT=1.88172,2.23729;MQM=59.9771,59.979;MQMR=60;NS=94;NUMALT=2;ODDS=0.91181;PAIRED=0,0;PAIREDR=0;PAO=0.5,5.5;PQA=18,198;PQR=0;PRO=0;QA=176890,65526;QR=260;RO=8;RPL=0,0;RPP=10912.5,4133.15;RPPR=20.3821;RPR=5024,1902;RUN=1,1;SAF=0,0;SAP=10912.5,4133.15;SAR=5024,1902;SRF=0;SRP=20.3821;SRR=8;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:39:0,38,1:0:0:38,1:1297,35:-116.354,-11.4391,0,-113.506,-8.24154,-113.204	1/1:35:0,35,0:0:0:35,0:1244,0:-112.265,-10.5361,0,-112.265,-10.5361,-112.265	1/2:107:0,31,75:0:0:31,75:1094,2597:-300.289,-211.202,-201.87,-89.2328,0,-66.6556	1/2:271:2,141,125:2:59:141,125:4976,4356:-754.171,-349.577,-311.838,-400.526,0,-367.604	1/2:53:0,25,28:0:0:25,28:896,959:-151.272,-78.1884,-70.6626,-73.4346,0,-65.0058	1/2:29:0,14,15:0:0:14,15:504,516:-83.3815,-42.25,-38.0355,-41.4837,0,-36.9682	1/1:123:0,122,1:0:0:122,1:4227,30:-380.31,-36.7257,0,-377.912,-34.0271,-377.611	1/2:111:0,42,67:0:0:42,67:1478,2323:-309.194,-188.873,-176.23,-120.382,0,-100.213	1/2:116:0,48,68:0:0:48,68:1712,2304:-326.716,-187.149,-172.699,-139.916,0,-119.446	1/1:78:0,78,0:0:0:78,0:2784,0:-250.801,-23.4803,0,-250.801,-23.4803,-250.801	1/2:39:0,26,13:0:0:26,13:924,464:-113.479,-38.1843,-30.3575,-75.6509,0,-71.7375	1/2:94:0,40,54:0:0:40,54:1384,1917:-269.014,-156.552,-144.511,-112.811,0,-96.5559	1/2:73:0,37,36:0:0:37,36:1298,1252:-207.775,-102.143,-91.0046,-105.982,0,-95.1445	1/2:22:0,15,7:0:0:15,7:505,246:-61.2797,-20.3746,-15.8591,-41.2517,0,-39.1445	1/1:66:0,66,0:0:0:66,0:2332,0:-210.141,-19.868,0,-210.141,-19.868,-210.141	1/2:39:0,16,23:0:0:16,23:559,806:-111.408,-65.9362,-61.1197,-45.8211,0,-38.8974	1/1:14:0,14,0:0:0:14,0:482,0:-43.7061,-4.21442,0,-43.7061,-4.21442,-43.7061	1/2:22:0,11,11:0:0:11,11:392,393:-64.3515,-32.3995,-29.0881,-32.3087,0,-28.9974	1/1:11:0,11,0:0:0:11,0:392,0:-35.6201,-3.31133,0,-35.6201,-3.31133,-35.6201	1/1:135:0,134,0:0:0:134,0:4753,0:-427.571,-40.338,0,-427.571,-40.338,-427.571	1/2:170:0,90,80:0:0:90,80:3157,2748:-480.396,-223.48,-196.388,-257.263,0,-233.18	1/1:98:0,95,2:0:0:95,2:3344,72:-300.572,-28.5979,0,-294.697,-22.6698,-294.095	1/1:81:0,81,0:0:0:81,0:2867,0:-258.267,-24.3834,0,-258.267,-24.3834,-258.267	1/2:77:1,43,32:1:30:43,32:1493,1082:-206.434,-85.3617,-74.815,-119.029,0,-111.793	1/2:92:0,43,49:0:0:43,49:1540,1676:-261.968,-136.37,-123.426,-125.949,0,-111.198	1/2:199:0,88,111:0:0:88,111:3065,3816:-559.473,-310.231,-283.741,-249.587,0,-216.173	1/1:225:1,224,0:1:30:224,0:7873,0:-705.585,-64.7322,0,-705.886,-67.4307,-708.284	1/1:30:0,30,0:0:0:30,0:1063,0:-95.9808,-9.0309,0,-95.9808,-9.0309,-95.9808	1/2:327:3,160,164:3:105:160,164:5684,5596:-907.782,-445.518,-405.896,-454.62,0,-413.794	1/2:79:0,33,46:0:0:33,46:1157,1583:-222.703,-128.55,-118.616,-94.1409,0,-80.2935	1/2:81:0,35,46:0:0:35,46:1228,1604:-230.736,-130.801,-120.265,-100.285,0,-86.4377	1/2:6:0,4,2:0:0:4,2:131,72:-16.795,-6.23466,-5.03054,-10.9094,0,-10.3073	1/1:17:0,17,0:0:0:17,0:604,0:-54.6906,-5.11751,0,-54.6906,-5.11751,-54.6906	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/2:9:0,4,5:0:0:4,5:140,173:-25.7973,-14.4049,-13.2008,-11.7405,0,-10.2353	1/2:8:0,7,1:0:0:7,1:248,36:-23.4951,-3.29724,-1.19003,-20.557,0,-20.256	1/2:159:0,87,72:0:0:87,72:3037,2490:-449.343,-202.319,-176.129,-247.012,0,-225.338	1/1:50:0,50,0:0:0:50,0:1737,0:-156.608,-15.0515,0,-156.608,-15.0515,-156.608	1/1:26:0,26,0:0:0:26,0:915,0:-82.6656,-7.82678,0,-82.6656,-7.82678,-82.6656	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:136:0,134,0:0:0:134,0:4710,0:-423.752,-40.338,0,-423.752,-40.338,-423.752	1/1:13:0,12,0:0:0:12,0:424,0:-38.2569,-3.61236,0,-38.2569,-3.61236,-38.2569	1/1:91:0,91,0:0:0:91,0:3147,0:-283.455,-27.3937,0,-283.455,-27.3937,-283.455	1/1:55:0,54,0:0:0:54,0:1919,0:-172.705,-16.2556,0,-172.705,-16.2556,-172.705	1/2:30:0,16,14:0:0:16,14:554,480:-84.3363,-39.3122,-34.4957,-45.3684,0,-41.154	1/2:120:0,50,69:0:0:50,69:1773,2357:-335.765,-191.313,-176.262,-144.493,0,-123.722	1/1:74:0,74,0:0:0:74,0:2602,0:-234.424,-22.2762,0,-234.424,-22.2762,-234.424	1/1:145:0,144,0:0:0:144,0:5033,0:-452.87,-43.3483,0,-452.87,-43.3483,-452.87	1/1:105:0,105,0:0:0:105,0:3732,0:-336.081,-31.6082,0,-336.081,-31.6082,-336.081	1/2:86:0,31,55:0:0:31,55:1097,1866:-241.016,-151.658,-142.326,-89.7061,0,-73.1494	1/2:133:0,67,65:0:0:67,65:2364,2245:-374.946,-182.446,-162.277,-192.547,0,-172.98	1/2:4:0,1,3:0:0:1,3:36,108:-12.1095,-9.17208,-8.87105,-3.29724,0,-2.39415	1/2:67:0,36,31:0:0:36,31:1274,1067:-190.78,-87.003,-76.166,-104.125,0,-94.7933	1/2:42:0,17,25:0:0:17,25:608,852:-119.048,-69.4639,-64.3464,-49.9345,0,-42.4088	1/2:10:0,7,3:0:0:7,3:237,95:-27.1746,-7.94553,-5.83832,-19.5518,0,-18.6488	1/2:107:0,43,64:0:0:43,64:1495,2175:-298.291,-176.749,-163.805,-121.886,0,-102.62	1/1:37:0,37,0:0:0:37,0:1292,0:-116.578,-11.1381,0,-116.578,-11.1381,-116.578	1/2:7:0,6,1:0:0:6,1:216,36:-20.9217,-3.29724,-1.49106,-17.9843,0,-17.6833	1/1:15:0,15,0:0:0:15,0:532,0:-48.2131,-4.51545,0,-48.2131,-4.51545,-48.2131	1/1:72:0,72,0:0:0:72,0:2511,0:-226.237,-21.6742,0,-226.237,-21.6742,-226.237	1/2:54:0,26,28:0:0:26,28:910,966:-152.86,-78.82,-70.9933,-74.3873,0,-65.9584	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:114:0,113,0:0:0:113,0:4000,0:-359.888,-34.0164,0,-359.888,-34.0164,-359.888	1/1:118:0,116,2:0:0:116,2:4069,64:-366.04,-34.9195,0,-360.884,-29.4432,-360.282	1/1:65:0,62,3:0:0:62,3:2165,102:-194.754,-18.6639,0,-186.481,-10.0907,-185.578	1/2:72:0,34,38:0:0:34,38:1216,1321:-206.908,-107.75,-97.5146,-99.5115,0,-88.0724	1/2:86:0,29,54:0:0:29,54:1018,1882:-235.973,-153.121,-144.391,-82.917,0,-66.6614	1/1:85:0,85,0:0:0:85,0:3000,0:-270.231,-25.5876,0,-270.231,-25.5876,-270.231	1/1:22:0,21,0:0:0:21,0:730,0:-65.6602,-6.32163,0,-65.6602,-6.32163,-65.6602	1/1:25:0,25,0:0:0:25,0:868,0:-78.433,-7.52575,0,-78.433,-7.52575,-78.433	1/2:30:0,18,12:0:0:18,12:631,424:-86.2291,-34.8841,-29.4655,-51.6971,0,-48.0848	1/2:15:0,9,6:0:0:9,6:305,200:-41.2533,-16.5208,-13.8116,-25.0679,0,-23.2618	1/1:190:0,189,1:0:0:189,1:6644,36:-597.687,-56.8947,0,-594.75,-53.5974,-594.449	1/1:68:0,68,0:0:0:68,0:2416,0:-217.694,-20.47,0,-217.694,-20.47,-217.694	1/2:84:0,40,44:0:0:40,44:1423,1502:-238.2,-122.224,-110.182,-116.326,0,-103.08	1/1:109:0,109,0:0:0:109,0:3860,0:-347.595,-32.8123,0,-347.595,-32.8123,-347.595	1/1:39:0,39,0:0:0:39,0:1361,0:-122.785,-11.7402,0,-122.785,-11.7402,-122.785	1/2:85:0,38,47:0:0:38,47:1347,1661:-245.366,-135.629,-124.19,-110.09,0,-95.9419	1/2:19:0,12,7:0:0:12,7:428,223:-53.1888,-18.2749,-14.6625,-35.2464,0,-33.1392	1/1:88:0,87,1:0:0:87,1:3036,36:-273.108,-26.1896,0,-270.171,-22.8924,-269.87	1/2:61:0,37,24:0:0:37,24:1320,826:-175.044,-67.4291,-56.291,-107.964,0,-100.739	1/1:206:0,205,1:0:0:205,1:7278,36:-654.716,-61.7112,0,-651.779,-58.4139,-651.478	1/1:45:0,44,1:0:0:44,1:1550,36:-139.431,-13.2453,0,-136.493,-9.94808,-136.192	1/2:45:0,17,26:0:0:17,26:612,902:-123.311,-73.3677,-68.2502,-49.9927,0,-42.1659	1/1:32:0,32,0:0:0:32,0:1144,0:-103.27,-9.63296,0,-103.27,-9.63296,-103.27	1/1:105:1,103,1:1:36:103,1:3629,36:-323.218,-28.0687,0,-320.581,-28.0687,-323.218	1/2:20:0,8,12:0:0:8,12:279,403:-55.6758,-32.98,-30.5718,-23.0393,0,-19.4269	1/1:70:0,70,0:0:0:70,0:2435,0:-219.404,-21.0721,0,-219.404,-21.0721,-219.404	1/2:65:0,28,36:0:0:28,36:1004,1237:-182.366,-100.471,-92.0422,-81.9258,0,-71.0887	1/2:21:0,12,9:0:0:12,9:432,298:-59.698,-24.4325,-20.8202,-35.6088,0,-32.8996	1/2:51:0,18,33:0:0:18,33:640,1139:-145.039,-92.8804,-87.4618,-52.5108,0,-42.5768	1/2:125:0,73,51:0:0:73,51:2531,1733:-346.258,-140.538,-118.562,-205.703,0,-190.351	1/1:97:0,96,0:0:0:96,0:3414,0:-307.204,-28.8989,0,-307.204,-28.8989,-307.204	1/1:80:0,80,0:0:0:80,0:2835,0:-255.39,-24.0824,0,-255.39,-24.0824,-255.39
chr12	24462498	.	T	C	107969	PASS	AB=0.481371;ABP=14.1749;AC=138;AF=0.734043;AN=188;AO=5190;CIGAR=1X;DP=7128;DPB=7128;DPRA=76.6344;EPP=11273;EPPR=4200.47;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9861;MQMR=59.9819;NS=94;NUMALT=1;ODDS=1.10648;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=185309;QR=68628;RO=1933;RPL=5190;RPP=11273;RPPR=4200.47;RPR=0;RUN=1;SAF=0;SAP=11273;SAR=5190;SRF=0;SRP=4200.47;SRR=1933;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:38:0,37:0:0:37:1328:-119.462,-11.1381,0	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:113:78,35:78:2762:35:1252:-78.9653,0,-214.803	0/1:282:133,149:133:4741:149:5322:-394.224,0,-341.958	0/1:53:28,25:28:1008:25:887:-64.1927,0,-75.0818	0/1:31:16,15:16:553:15:540:-39.6046,0,-40.7621	1/1:122:0,122:0:0:122:4376:-394.013,-36.7257,0	0/1:116:69,47:69:2446:47:1665:-115.216,0,-185.473	0/1:121:69,52:69:2430:52:1857:-130.983,0,-182.529	1/1:82:0,82:0:0:82:2898:-261.055,-24.6845,0	0/1:40:13,27:13:468:27:972:-75.7567,0,-30.4184	0/1:94:53,41:53:1893:41:1472:-104.479,0,-142.349	0/1:77:39,38:39:1404:38:1356:-99.1612,0,-103.48	0/1:21:6,15:6:216:15:540:-42.6149,0,-13.4689	1/1:69:0,69:0:0:69:2484:-223.812,-20.7711,0	0/1:38:23,15:23:811:15:540:-37.4974,0,-61.8708	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	0/1:22:11,11:11:396:11:385:-28.3615,0,-29.3601	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:146:0,146:0:0:146:5221:-470.028,-43.9504,0	0/1:176:80,96:80:2842:96:3414:-254.491,0,-203.034	1/1:101:2,99:2:72:99:3549:-312.778,-23.5673,0	1/1:80:0,80:0:0:80:2850:-256.715,-24.0824,0	0/1:78:32,46:32:1125:46:1637:-124.135,0,-78.0757	0/1:90:47,43:47:1688:43:1542:-111.98,0,-125.114	0/1:202:111,91:111:3914:91:3245:-231.462,0,-291.647	1/1:234:0,234:0:0:234:8306:-747.551,-70.441,0	1/1:30:0,30:0:0:30:1076:-97.1529,-9.0309,0	0/1:328:162,166:162:5792:166:5961:-437.855,0,-422.657	0/1:84:49,35:49:1726:35:1256:-88.0588,0,-130.334	0/1:86:48,38:48:1724:38:1337:-94.7388,0,-129.557	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:9:5,4:5:180:4:144:-10.6043,0,-13.8428	0/1:9:2,7:2:72:7:248:-19.9549,0,-4.12745	0/1:161:73,88:73:2592:88:3151:-235.349,0,-184.834	1/1:50:0,50:0:0:50:1792:-161.562,-15.0515,0	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:139:0,138:0:0:138:4877:-438.72,-41.5421,0	1/1:13:0,13:0:0:13:464:-42.0975,-3.91339,0	1/1:98:0,98:0:0:98:3476:-313.05,-29.5009,0	1/1:55:1,54:1:36:54:1940:-171.278,-12.9584,0	0/1:31:14,17:14:500:17:604:-45.3587,0,-36.0042	0/1:120:69,51:69:2427:51:1832:-129.037,0,-182.558	1/1:75:0,75:0:0:75:2677:-241.175,-22.5773,0	1/1:148:0,147:0:0:147:5234:-470.837,-44.2514,0	1/1:108:0,108:0:0:108:3857:-347.325,-32.5112,0	0/1:87:55,32:55:1930:32:1137:-76.4474,0,-147.783	0/1:138:68,70:68:2409:70:2508:-184.43,0,-175.523	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/1:73:34,38:34:1205:38:1368:-101.387,0,-86.7201	0/1:42:25,17:25:862:17:612:-42.7702,0,-65.2475	0/1:11:4,7:4:144:7:252:-19.7176,0,-9.99886	0/1:111:65,46:65:2305:46:1630:-113.572,0,-174.295	1/1:38:0,38:0:0:38:1343:-121.167,-11.4391,0	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	1/1:76:0,76:0:0:76:2692:-242.522,-22.8783,0	0/1:56:29,27:29:1036:27:968:-70.5797,0,-76.6962	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	1/1:119:0,119:0:0:119:4267:-384.207,-35.8226,0	1/1:118:2,116:2:53:116:4122:-366.124,-30.4872,0	1/1:66:3,63:3:108:63:2256:-193.228,-9.79281,0	0/1:76:39,37:39:1389:37:1332:-97.3041,0,-102.429	0/1:88:57,31:57:2044:31:1097:-72.5482,0,-157.741	1/1:85:0,85:0:0:85:3052:-274.906,-25.5876,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	0/1:31:13,18:13:464:18:648:-49.32,0,-32.7656	0/1:14:6,8:6:201:8:277:-21.0507,0,-14.2026	1/1:194:0,194:0:0:194:6957:-626.192,-58.3998,0	1/1:70:0,70:0:0:70:2506:-225.792,-21.0721,0	0/1:82:43,39:43:1513:39:1396:-101.255,0,-111.777	1/1:109:0,109:0:0:109:3898:-351.012,-32.8123,0	1/1:42:0,42:0:0:42:1474:-132.951,-12.6433,0	0/1:86:48,38:48:1716:38:1334:-94.4673,0,-128.837	0/1:21:7,14:7:252:14:492:-38.2901,0,-16.7073	1/1:87:0,87:0:0:87:3111:-280.217,-26.1896,0	0/1:63:24,39:24:860:39:1385:-105.982,0,-58.7569	1/1:209:1,208:1:36:208:7418:-664.068,-59.317,0	1/1:47:1,46:1:36:46:1644:-144.65,-10.5501,0	0/1:46:28,18:28:988:18:648:-44.8045,0,-75.3865	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:110:2,108:2:72:108:3852:-340.038,-26.2766,0	0/1:20:12,8:12:432:8:282:-19.7005,0,-33.2006	1/1:74:0,74:0:0:74:2634:-237.306,-22.2762,0	0/1:65:36,29:36:1288:29:1036:-73.987,0,-96.6533	0/1:22:10,12:10:345:12:423:-31.7824,0,-24.7582	0/1:50:32,18:32:1129:18:648:-43.6004,0,-86.8648	0/1:123:49,74:49:1745:74:2660:-202.61,0,-120.306	1/1:99:0,99:0:0:99:3554:-320.068,-29.802,0	1/1:83:0,82:0:0:82:2944:-264.834,-24.6845,0
chr12	24509310	.	GAATT	GAATC,AAATC	84211.6	PASS	AB=0.583512,0.415418;ABP=116.169,119.089;AC=139,49;AF=0.739362,0.260638;AN=188;AO=3165,781;CIGAR=4M1X,1X3M1X;DP=3951;DPB=3951.6;DPRA=42.4731,0.927854;EPP=6875.72,1698.93;EPPR=0;GTI=4;LEN=1,5;MEANALT=1.5914,2.01961;MQM=59.9858,59.8668;MQMR=0;NS=94;NUMALT=2;ODDS=2.31135;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,72;PQR=0;PRO=0;QA=112489,27638;QR=0;RO=0;RPL=3165,781;RPP=6875.72,1698.93;RPPR=0;RPR=0,0;RUN=1,1;SAF=3165,781;SAP=6875.72,1698.93;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:37:0,37,0:0:0:37,0:1315,0:-118.651,-11.1381,0,-118.651,-11.1381,-118.651	1/1:63:0,63,0:0:0:63,0:2238,0:-201.683,-18.9649,0,-201.683,-18.9649,-201.683	1/2:204:0,106,98:0:0:106,98:3778,3475:-591.364,-283.41,-251.5,-308.31,0,-278.809	1/2:99:0,74,25:0:0:74,25:2634,887:-287.299,-72.6234,-50.3472,-215.03,0,-207.504	1/2:27:0,18,9:0:0:18,9:640,323:-78.859,-26.7058,-21.2873,-52.5108,0,-49.8015	1/2:19:0,13,6:0:0:13,6:455,208:-54.2738,-17.2528,-13.3394,-37.3686,0,-35.5624	1/1:44:0,44,0:0:0:44,0:1562,0:-140.87,-13.2453,0,-140.87,-13.2453,-140.87	1/2:32:0,21,11:0:0:21,11:743,392:-92.8251,-32.3087,-25.9871,-60.8717,0,-57.5604	1/2:35:0,28,7:0:0:28,7:1008,239:-101.999,-19.736,-11.3072,-82.6075,0,-80.5003	1/1:53:0,53,0:0:0:53,0:1904,0:-171.638,-15.9546,0,-171.638,-15.9546,-171.638	1/2:11:0,5,6:0:0:5,6:180,213:-32.3991,-17.7097,-16.2046,-15.0469,0,-13.2407	1/2:46:0,32,14:0:0:32,14:1135,503:-133.861,-41.3933,-31.7603,-92.8251,0,-88.6107	1/2:38:0,22,16:0:0:22,16:788,560:-110.181,-45.9125,-39.2899,-64.6221,0,-59.8057	1/2:27:0,13,14:0:0:13,14:468,504:-79.6701,-41.4837,-37.5703,-38.5463,0,-34.3318	1/1:42:0,42,0:0:0:42,0:1487,0:-134.124,-12.6433,0,-134.124,-12.6433,-134.124	1/2:25:0,12,13:0:0:12,13:432,455:-72.6227,-37.3689,-33.7565,-35.6088,0,-31.6954	1/1:22:0,22,0:0:0:22,0:769,0:-69.5286,-6.62266,0,-69.5286,-6.62266,-69.5286	1/2:14:0,5,9:0:0:5,9:176,314:-40.2169,-25.8878,-24.3826,-14.6799,0,-11.9706	1/1:12:0,12,0:0:0:12,0:423,0:-38.4051,-3.61236,0,-38.4051,-3.61236,-38.4051	1/1:51:0,51,0:0:0:51,0:1828,0:-164.793,-15.3525,0,-164.793,-15.3525,-164.793	1/2:56:0,33,23:0:0:33,23:1180,820:-163.416,-67.199,-57.265,-96.5741,0,-89.6504	1/1:62:0,61,0:0:0:61,0:2155,0:-193.855,-18.3628,0,-193.855,-18.3628,-193.855	1/1:49:0,49,0:0:0:49,0:1760,0:-158.682,-14.7505,0,-158.682,-14.7505,-158.682	1/2:24:0,12,11:0:0:12,11:428,394:-67.077,-32.1854,-28.573,-34.9421,0,-31.6308	1/2:28:0,20,8:0:0:20,8:712,282:-81.3458,-23.3131,-17.2925,-58.3861,0,-55.9778	1/2:114:0,65,48:0:0:65,48:2311,1685:-325.474,-137.143,-117.576,-188.342,0,-173.893	1/1:117:0,117,0:0:0:117,0:4148,0:-373.502,-35.2205,0,-373.502,-35.2205,-373.502	1/1:12:0,12,0:0:0:12,0:415,0:-37.6803,-3.61236,0,-37.6803,-3.61236,-37.6803	1/2:76:0,51,25:0:0:51,25:1827,897:-222.524,-73.525,-58.1725,-149.358,0,-141.832	1/2:52:0,27,25:0:0:27,25:963,878:-150.316,-71.8111,-63.6833,-78.8581,0,-71.3324	1/2:46:0,30,16:0:0:30,16:1072,573:-134.491,-47.0868,-38.0559,-87.7616,0,-82.9451	1/2:10:0,7,3:0:0:7,3:252,108:-29.734,-9.17208,-7.06487,-20.9217,0,-20.0187	1/1:10:0,10,0:0:0:10,0:356,0:-32.3812,-3.0103,0,-32.3812,-3.0103,-32.3812	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	2/2:1:0,0,1:0:0:0,1:0,31:-3.09945,-3.09945,-3.09945,-0.30103,-0.30103,0	1/2:5:0,1,4:0:0:1,4:36,139:-14.588,-11.6481,-11.3471,-3.29724,0,-2.09312	1/2:66:0,42,24:0:0:42,24:1485,850:-190.531,-69.5856,-56.9424,-121.299,0,-114.074	1/1:122:0,122,0:0:0:122,0:4302,0:-387.357,-36.7257,0,-387.357,-36.7257,-387.357	1/1:18:0,18,0:0:0:18,0:644,0:-58.2906,-5.41854,0,-58.2906,-5.41854,-58.2906	1/2:2:0,1,1:0:0:1,1:36,36:-6.23466,-3.29724,-2.99621,-3.29724,0,-2.99621	1/1:38:0,38,0:0:0:38,0:1338,0:-120.718,-11.4391,0,-120.718,-11.4391,-120.718	1/1:15:0,15,0:0:0:15,0:532,0:-48.2131,-4.51545,0,-48.2131,-4.51545,-48.2131	1/1:99:0,99,0:0:0:99,0:3537,0:-318.534,-29.802,0,-318.534,-29.802,-318.534	1/1:12:0,12,0:0:0:12,0:428,0:-38.8588,-3.61236,0,-38.8588,-3.61236,-38.8588	1/2:18:0,5,13:0:0:5,13:180,452:-51.7876,-37.0971,-35.592,-15.0469,0,-11.1335	1/2:52:0,24,28:0:0:24,28:860,981:-150.317,-80.174,-72.9492,-70.4971,0,-62.0683	1/1:57:0,57,0:0:0:57,0:2039,0:-183.781,-17.1587,0,-183.781,-17.1587,-183.781	1/1:76:0,74,2:0:0:74,2:2605,71:-234.341,-22.2762,0,-228.556,-16.1362,-227.954	1/1:74:0,74,0:0:0:74,0:2627,0:-236.678,-22.2762,0,-236.678,-22.2762,-236.678	1/2:36:0,18,18:0:0:18,18:648,647:-106.017,-53.1431,-47.7246,-53.2333,0,-47.8148	1/2:82:0,47,35:0:0:47,35:1675,1238:-237.721,-101.187,-87.0391,-136.888,0,-126.352	1/2:3:0,1,2:0:0:1,2:36,69:-8.89288,-5.95048,-5.64945,-3.29724,0,-2.69518	1/2:53:0,30,23:0:0:30,23:1080,803:-153.793,-65.6647,-56.6338,-88.4823,0,-81.5587	1/2:28:0,12,16:0:0:12,16:432,573:-82.3372,-47.0874,-43.4751,-35.6088,0,-30.7924	1/2:12:0,8,4:0:0:8,4:288,143:-35.5183,-12.0173,-9.60908,-23.8592,0,-22.655	1/2:49:0,25,24:0:0:25,24:900,850:-143.034,-69.5953,-62.0695,-73.7953,0,-66.5705	1/1:20:0,20,0:0:0:20,0:720,0:-65.1264,-6.0206,0,-65.1264,-6.0206,-65.1264	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83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chr12	24509748	.	A	C	92752.9	PASS	AB=0.493819;ABP=4.03034;AC=141;AF=0.75;AN=188;AO=4508;CIGAR=1X;DP=6073;DPB=6073;DPRA=0;EPP=9792.01;EPPR=3394.85;GTI=0;LEN=1;MEANALT=1.03191;MQM=47.232;MQMR=59.4699;NS=94;NUMALT=1;ODDS=1.68022;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=160960;QR=55777;RO=1562;RPL=0;RPP=9792.01;RPPR=3394.85;RPR=4508;RUN=1;SAF=0;SAP=9792.01;SAR=4508;SRF=0;SRP=3394.85;SRR=1562;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:41:1,40:1:36:40:1432:-124.896,-8.74396,0	1/1:67:0,67:0:0:67:2389:-214.073,-20.169,0	0/1:120:62,58:62:2223:58:2076:-149.831,0,-164.175	0/1:141:68,72:68:2421:72:2575:-186.582,0,-175.719	0/1:38:23,15:23:828:15:536:-36.8112,0,-63.3825	0/1:8:2,6:2:72:6:201:-15.9188,0,-4.42848	1/1:52:0,52:0:0:52:1834:-163.923,-15.6536,0	0/1:104:52,52:52:1859:52:1864:-135.382,0,-136.264	0/1:85:49,36:49:1745:36:1288:-90.023,0,-131.726	1/1:88:0,88:0:0:88:3147:-279.466,-26.4906,0	0/1:14:8,6:8:288:6:216:-15.4091,0,-22.0243	0/1:61:30,31:30:1063:31:1108:-81.1596,0,-77.618	0/1:47:18,29:18:644:29:1024:-77.1828,0,-44.1413	0/1:25:16,9:16:561:9:320:-21.4264,0,-43.2554	1/1:51:0,51:0:0:51:1809:-160.552,-15.3525,0	0/1:27:19,8:19:680:8:280:-17.2086,0,-53.4014	1/1:17:0,17:0:0:17:612:-54.8117,-5.11751,0	0/1:14:10,4:10:360:4:144:-8.66521,0,-28.5299	1/1:5:0,5:0:0:5:180:-16.4623,-1.50515,0	1/1:121:0,120:0:0:120:4281:-379.286,-36.1236,0	0/1:99:58,41:58:2067:41:1468:-100.545,0,-156.339	1/1:92:0,92:0:0:92:3292:-292.437,-27.6948,0	1/1:83:0,83:0:0:83:2980:-265.486,-24.9855,0	0/1:56:36,20:36:1288:20:720:-47.401,0,-99.3211	0/1:104:54,50:54:1944:50:1796:-129.461,0,-143.35	0/1:317:152,165:152:5450:165:5895:-429.306,0,-395.098	1/1:207:0,207:0:0:207:7403:-659.718,-62.3132,0	1/1:17:0,17:0:0:17:612:-55.0309,-5.11751,0	0/1:224:112,112:112:3973:112:3997:-289.039,0,-289.993	0/1:61:29,32:29:1035:32:1148:-84.2669,0,-74.7792	0/1:54:21,33:21:756:33:1176:-89.0173,0,-52.0831	0/1:10:8,2:8:284:2:72:-3.77922,0,-22.8931	1/1:16:0,16:0:0:16:576:-51.8148,-4.81648,0	1/1:2:0,2:0:0:2:72:-6.79966,-0.60206,0	1/1:1:0,1:0:0:1:36:-3.57877,-0.30103,0	0/1:12:2,10:2:72:10:360:-28.9019,0,-3.22436	0/1:98:39,59:39:1376:59:2104:-157.754,0,-94.572	1/1:111:0,110:0:0:110:3900:-348.216,-33.1133,0	1/1:20:0,20:0:0:20:716:-64.4207,-6.0206,0	1/1:3:0,3:0:0:3:108:-10.0056,-0.90309,0	1/1:69:1,68:1:36:68:2440:-214.402,-17.1728,0	1/1:13:0,13:0:0:13:464:-41.7702,-3.91339,0	1/1:140:0,140:0:0:140:4990:-445.051,-42.1442,0	1/1:20:0,20:0:0:20:708:-62.8404,-6.0206,0	0/1:42:24,18:24:864:18:635:-44.3615,0,-65.437	0/1:137:71,66:71:2536:66:2364:-169.614,0,-187.041	1/1:87:0,87:0:0:87:3111:-277.835,-26.1896,0	1/1:159:0,159:0:0:159:5665:-505.338,-47.8638,0	1/1:89:0,89:0:0:89:3171:-282.025,-26.7917,0	0/1:76:34,42:34:1215:42:1504:-111.535,0,-86.7728	0/1:103:44,59:44:1580:59:2103:-156.121,0,-111.229	0/1:5:2,3:2:72:3:108:-8.48192,0,-5.30168	0/1:139:68,71:68:2444:71:2552:-186.549,0,-178.301	0/1:31:14,17:14:504:17:593:-43.6077,0,-36.3662	0/1:8:6,2:6:207:2:72:-4.39142,0,-16.5587	0/1:97:44,53:44:1571:53:1904:-140.301,0,-112.456	1/1:35:0,35:0:0:35:1248:-111.087,-10.5361,0	0/1:5:1,4:1:36:4:144:-11.6921,0,-2.09312	1/1:11:0,11:0:0:11:396:-35.3234,-3.31133,0	1/1:50:1,49:1:36:49:1752:-152.999,-11.4532,0	0/1:61:32,29:32:1148:29:1029:-73.367,0,-85.2362	1/1:4:0,4:0:0:4:144:-13.2033,-1.20412,0	1/1:139:0,139:0:0:139:4972:-442.639,-41.8432,0	1/1:139:0,139:0:0:139:4967:-441.094,-41.8432,0	1/1:15:0,15:0:0:15:540:-48.5987,-4.51545,0	0/1:51:29,22:29:1017:22:769:-53.6031,0,-76.4873	0/1:108:52,56:52:1846:56:2004:-146.596,0,-133.668	1/1:108:3,105:3:108:105:3728:-321.572,-22.4361,0	1/1:14:0,14:0:0:14:496:-44.2385,-4.21442,0	1/1:18:0,18:0:0:18:648:-58.3339,-5.41854,0	0/1:42:22,20:22:784:20:705:-50.5876,0,-58.2339	0/1:17:6,11:6:216:11:396:-30.4485,0,-14.673	1/1:117:0,117:0:0:117:4191:-374.152,-35.2205,0	1/1:47:0,47:0:0:47:1680:-150.071,-14.1484,0	0/1:109:57,52:57:2037:52:1826:-130.388,0,-150.743	1/1:103:0,103:0:0:103:3686:-328.166,-31.0061,0	1/1:80:0,80:0:0:80:2864:-255.373,-24.0824,0	0/1:62:39,23:39:1387:23:824:-55.4418,0,-106.447	0/1:14:5,9:5:180:9:320:-24.7786,0,-12.3376	1/1:81:0,81:0:0:81:2896:-258.39,-24.3834,0	0/1:71:39,32:39:1396:32:1148:-81.7034,0,-104.531	1/1:186:0,186:0:0:186:6684:-594.074,-55.9916,0	1/1:31:0,31:0:0:31:1099:-97.6954,-9.33193,0	0/1:30:12,18:12:428:18:648:-48.7708,0,-29.7993	1/1:26:0,26:0:0:26:928:-83.0761,-7.82678,0	1/1:72:0,72:0:0:72:2530:-225.09,-21.6742,0	0/1:13:9,4:9:320:4:144:-9.33772,0,-25.228	1/1:36:0,36:0:0:36:1276:-113.721,-10.8371,0	0/1:36:22,14:22:788:14:495:-33.5119,0,-60.4068	0/1:10:3,7:3:104:7:248:-19.5084,0,-6.69251	0/1:41:21,20:21:752:20:720:-52.3369,0,-55.6191	0/1:47:31,16:31:1104:16:576:-37.5704,0,-85.4654	1/1:75:1,74:1:36:74:2640:-231.072,-18.979,0	1/1:41:0,41:0:0:41:1468:-131.176,-12.3422,0
chr12	24578198	.	G	T	96231.7	PASS	AB=0.501541;ABP=3.18435;AC=49;AF=0.260638;AN=188;AO=4256;CIGAR=1X;DP=15848;DPB=15848;DPRA=1.24293;EPP=9244.8;EPPR=25157.3;GTI=0;LEN=1;MEANALT=1.04918;MQM=56.4767;MQMR=59.9611;NS=94;NUMALT=1;ODDS=4.96757;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=151416;QR=412229;RO=11588;RPL=1987;RPP=43.5846;RPPR=30.642;RPR=2269;RUN=1;SAF=1987;SAP=43.5846;SAR=2269;SRF=5987;SRP=30.9306;SRR=5601;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:71:69,2:69:2460:2:72:0,-14.5364,-214.817	0/0:216:216,0:216:7665:0:0:0,-65.0225,-689.886	0/1:222:135,87:135:4824:87:3094:-211.316,0,-367.485	0/1:265:150,115:150:5324:115:4062:-285.464,0,-399.438	0/1:115:55,60:55:1964:60:2099:-153.984,0,-142.417	0/1:90:46,44:46:1633:44:1572:-114.517,0,-120.164	0/0:232:232,0:232:8263:0:0:0,-69.839,-743.668	0/1:270:139,131:139:4944:131:4646:-335.747,0,-363.832	0/1:181:92,89:92:3270:89:3172:-230.693,0,-239.904	0/0:118:118,0:118:4232:0:0:0,-35.5215,-381.058	0/1:195:92,102:92:3280:102:3636:-268.547,0,-236.77	0/1:192:80,112:80:2835:112:3989:-299.092,0,-197.589	0/1:247:126,121:126:4437:121:4323:-312.883,0,-325.15	0/1:306:156,149:156:5545:149:5292:-383.121,0,-407.018	0/0:178:178,0:178:6340:0:0:0,-53.5833,-570.693	0/1:191:91,100:91:3233:100:3548:-261.039,0,-233.695	0/0:267:267,0:267:9513:0:0:0,-80.375,-856.087	0/1:229:97,132:97:3440:132:4707:-353.012,0,-240.876	0/0:201:201,0:201:7145:0:0:0,-60.507,-643.099	0/0:226:226,0:226:8078:0:0:0,-68.0328,-727.033	0/1:213:101,112:101:3601:112:3976:-293.335,0,-260.176	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/0:92:92,0:92:3291:0:0:0,-27.6948,-296.409	0/1:141:69,72:69:2440:72:2584:-189.874,0,-177.408	0/1:83:32,51:32:1139:51:1820:-139.022,0,-77.8329	0/1:300:144,156:144:5155:156:5579:-411.726,0,-373.781	0/0:303:302,1:302:10765:1:36:0,-87.6138,-965.159	0/0:97:97,0:97:3456:0:0:0,-29.1999,-311.251	0/1:383:219,164:219:7757:164:5812:-407.028,0,-582.872	0/1:150:71,79:71:2544:79:2819:-208.49,0,-184.052	0/1:169:100,69:100:3577:69:2439:-168.335,0,-271.192	0/1:9:7,2:7:252:2:72:-4.11776,0,-20.3197	0/0:23:23,0:23:806:0:0:0,-6.92369,-72.8582	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/1:20:8,12:8:288:12:432:-32.9681,0,-20.2468	0/1:21:13,8:13:468:8:288:-19.8962,0,-36.138	0/1:444:228,216:228:8087:216:7715:-558.613,0,-593.176	0/0:178:178,0:178:6326:0:0:0,-53.5833,-569.433	0/0:205:205,0:205:7285:0:0:0,-61.7111,-655.707	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:229:228,1:228:8099:1:36:0,-65.3376,-725.296	0/0:125:125,0:125:4421:0:0:0,-37.6287,-398.066	0/0:212:211,1:211:7465:1:27:0,-61.1186,-669.197	0/0:167:167,0:167:5932:0:0:0,-50.272,-533.991	0/1:143:64,79:64:2266:79:2797:-207.718,0,-161.151	0/1:83:41,42:41:1459:42:1488:-109.209,0,-106.62	0/0:173:172,0:172:6149:0:0:0,-51.7772,-553.168	0/0:197:196,1:196:6972:1:36:0,-55.7046,-623.946	0/0:145:145,0:145:5140:0:0:0,-43.6493,-462.742	0/1:216:91,125:91:3255:125:4459:-335.44,0,-228.148	0/1:196:103,93:103:3679:93:3326:-240.51,0,-272.311	0/1:13:3,10:3:108:10:356:-28.4598,0,-6.16178	0/1:251:126,125:126:4454:125:4480:-327.275,0,-325.471	0/1:71:34,37:34:1211:37:1324:-97.9896,0,-87.9224	0/1:19:12,7:12:417:7:252:-17.2846,0,-32.1406	0/1:192:106,86:106:3772:86:3059:-216.81,0,-281.881	0/0:48:48,0:48:1712:0:0:0,-14.4494,-153.737	0/1:14:11,3:11:396:3:99:-5.02016,0,-31.7683	0/0:23:23,0:23:806:0:0:0,-6.92369,-72.8582	0/0:110:110,0:110:3910:0:0:0,-33.1133,-352.091	0/1:330:153,177:153:5444:177:6311:-466.557,0,-390.75	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:133:133,0:133:4744:0:0:0,-40.037,-427.109	0/0:316:314,2:314:11148:2:72:0,-88.2912,-996.373	0/0:143:136,7:136:4835:7:252:0,-20.0277,-412.285	0/1:102:57,45:57:2031:45:1596:-112.806,0,-152.357	0/1:163:77,86:77:2755:86:3032:-223.595,0,-199.123	0/0:120:120,0:120:4274:0:0:0,-36.1236,-384.839	0/0:126:126,0:126:4474:0:0:0,-37.9298,-402.822	0/0:161:161,0:161:5760:0:0:0,-48.4658,-518.472	0/1:298:145,153:145:5077:153:5459:-400.681,0,-367.346	0/1:29:12,17:12:428:17:612:-46.4387,0,-30.1289	0/0:116:116,0:116:4148:0:0:0,-34.9195,-372.876	0/0:141:141,0:141:5008:0:0:0,-42.4452,-450.866	0/1:281:144,136:144:5132:136:4798:-346.704,0,-376.716	0/0:265:263,2:263:9401:2:72:0,-72.9362,-839.216	0/0:201:201,0:201:7139:0:0:0,-60.507,-642.569	0/1:213:112,101:112:3972:101:3567:-255.446,0,-293.548	0/1:20:14,6:14:500:6:216:-13.7367,0,-39.3156	0/0:180:176,4:176:6270:4:144:0,-40.8765,-551.085	0/1:178:83,95:83:2963:95:3379:-249.615,0,-213.318	0/0:314:313,1:313:11170:1:32:0,-91.3251,-1001.99	0/0:224:224,0:224:7920:0:0:0,-67.4307,-712.826	0/1:228:129,99:129:4550:99:3517:-247.824,0,-341.035	0/0:229:229,0:229:8165:0:0:0,-68.9359,-734.867	0/0:288:285,3:285:10210:3:108:0,-76.6311,-908.757	0/1:98:41,57:41:1434:57:2036:-153.184,0,-99.8508	0/0:194:194,0:194:6886:0:0:0,-58.3998,-619.812	0/1:172:79,93:79:2824:93:3298:-244.477,0,-202.622	0/1:238:114,124:114:4088:124:4397:-323.085,0,-296.46	0/1:297:153,144:153:5418:144:5135:-371.865,0,-398.347	0/1:149:44,105:44:1553:105:3752:-292.908,0,-95.2063	0/0:90:89,1:89:3163:1:36:0,-23.497,-281.297	0/0:266:266,0:266:9456:0:0:0,-80.074,-851.002
chr12	24578201	.	CCC	TCT,CCT	431958	PASS	AB=0.501639,0.49368;ABP=3.20955,5.97473;AC=139,49;AF=0.739362,0.260638;AN=188;AO=11820,4251;CIGAR=1X1M1X,2M1X;DP=16137;DPB=16137.7;DPRA=0,1.27706;EPP=25661.1,9225.26;EPPR=5.18177;GTI=0;LEN=3,1;MEANALT=2.30851,2.61538;MQM=59.9483,56.5712;MQMR=60;NS=94;NUMALT=2;ODDS=6.8851;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=72,0;PQR=0;PRO=0;QA=413411,151253;QR=36;RO=1;RPL=6119,1998;RPP=35.1091,36.226;RPPR=5.18177;RPR=5701,2253;RUN=1,1;SAF=6120,1997;SAP=35.417,36.7491;SAR=5700,2254;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:71:0,69,2:0:0:69,2:2416,63:-217.364,-20.7711,0,-212.299,-15.7348,-211.697	1/1:228:0,227,0:0:0:227,0:7916,0:-712.116,-68.3338,0,-712.116,-68.3338,-712.116	1/2:228:0,137,90:0:0:137,90:4829,3196:-653.291,-260.115,-218.874,-393.31,0,-366.217	1/2:268:0,156,112:0:0:156,112:5442,3993:-767.896,-325.376,-278.416,-442.872,0,-409.157	1/2:116:0,57,57:0:0:57,57:2007,1988:-324.634,-161.239,-144.08,-163.405,0,-146.246	1/2:90:0,46,44:0:0:46,44:1603,1571:-258.621,-128.264,-114.416,-130.71,0,-117.464	1/1:235:0,235,0:0:0:235,0:8184,0:-736.485,-70.7421,0,-736.485,-70.7421,-736.485	1/2:271:0,140,127:0:0:140,127:4885,4544:-766.823,-369.508,-327.364,-397.344,0,-359.113	1/2:183:0,92,89:0:0:92,89:3243,3121:-517.797,-253.748,-226.053,-264.152,0,-237.361	1/1:119:0,119,0:0:0:119,0:4222,0:-380.163,-35.8226,0,-380.163,-35.8226,-380.163	1/2:197:0,93,102:0:0:93,102:3244,3640:-560.33,-296.493,-268.497,-263.83,0,-233.125	1/2:196:0,83,113:0:0:83,113:2909,3981:-559.017,-322.307,-297.322,-237.06,0,-203.043	1/2:249:0,124,124:0:0:124,124:4323,4437:-711.034,-359.465,-322.137,-351.561,0,-314.234	1/2:310:0,161,149:0:0:161,149:5639,5324:-891.719,-432.897,-384.431,-459.175,0,-414.322	1/1:182:0,181,1:0:0:181,1:6385,36:-574.388,-54.4864,0,-571.45,-51.1892,-571.149	1/2:198:0,95,103:0:0:95,103:3340,3654:-568.825,-296.963,-268.365,-272.215,0,-241.209	1/1:277:0,276,0:0:0:276,0:9678,0:-870.548,-83.0843,0,-870.548,-83.0843,-870.548	1/2:233:0,99,130:0:0:99,130:3466,4651:-659.991,-377.989,-348.187,-282.038,0,-242.904	1/1:206:0,203,2:0:0:203,2:7122,72:-640.702,-61.1091,0,-634.827,-55.181,-634.225	1/1:228:0,227,0:0:0:227,0:7945,0:-714.829,-68.3338,0,-714.829,-68.3338,-714.829	1/2:217:0,106,111:0:0:106,111:3712,3958:-624.621,-322.599,-290.689,-302.375,0,-268.961	1/1:56:0,56,0:0:0:56,0:1954,0:-176.134,-16.8577,0,-176.134,-16.8577,-176.134	1/1:94:0,93,0:0:0:93,0:3249,0:-292.272,-27.9958,0,-292.272,-27.9958,-292.272	1/2:143:0,70,71:0:0:70,71:2466,2514:-405.175,-204.405,-183.333,-200.84,0,-179.467	1/2:79:0,33,46:0:0:33,46:1127,1644:-225.724,-134.276,-124.342,-91.796,0,-77.9486	1/2:310:0,153,157:0:0:153,157:5314,5617:-890.171,-458.177,-412.12,-432.346,0,-385.084	1/1:312:0,309,2:0:0:309,2:10835,72:-974.709,-93.0183,0,-968.834,-87.1434,-968.232	1/1:99:0,99,0:0:0:99,0:3502,0:-315.393,-29.802,0,-315.393,-29.802,-315.393	1/2:384:0,219,164:0:0:219,164:7662,5794:-1094.69,-471.345,-405.42,-623.412,0,-574.043	1/2:154:0,72,82:0:0:72,82:2488,2911:-439.398,-237.251,-215.577,-202.496,0,-177.812	1/2:172:0,101,70:0:0:101,70:3525,2508:-490.639,-203.939,-173.535,-286.694,0,-265.622	1/2:9:0,7,2:0:0:7,2:243,72:-25.9687,-6.22497,-4.11776,-20.1003,0,-19.4982	1/1:23:0,23,0:0:0:23,0:813,0:-73.4905,-6.92369,0,-73.4905,-6.92369,-73.4905	1/1:10:0,10,0:0:0:10,0:354,0:-32.2,-3.0103,0,-32.2,-3.0103,-32.2	1/2:20:0,8,12:0:0:8,12:278,432:-57.9735,-35.3764,-32.9681,-22.9486,0,-19.3362	1/2:20:0,13,7:0:0:13,7:450,248:-57.0771,-20.5123,-16.5989,-36.9156,0,-34.8084	1/2:456:0,234,220:0:0:234,220:8209,7844:-1305.45,-637.786,-567.345,-667.769,0,-601.542	1/1:176:0,175,0:0:0:175,0:6147,0:-552.977,-52.6803,0,-552.977,-52.6803,-552.977	1/1:210:0,208,0:0:0:208,0:7251,0:-652.409,-62.6142,0,-652.409,-62.6142,-652.409	1/2:5:0,3,2:0:0:3,2:100,72:-14.3123,-6.23466,-5.33157,-8.42677,0,-7.82471	1/1:235:0,233,1:0:0:233,1:8099,36:-728.61,-70.14,0,-725.673,-67.1893,-725.372	1/1:126:0,126,0:0:0:126,0:4402,0:-396.359,-37.9298,0,-396.359,-37.9298,-396.359	1/1:222:0,220,1:0:0:220,1:7673,36:-690.263,-66.2266,0,-687.326,-63.2892,-687.025	1/1:172:0,171,0:0:0:171,0:5978,0:-537.776,-51.4761,0,-537.776,-51.4761,-537.776	1/2:142:0,65,77:0:0:65,77:2244,2687:-400.54,-218.233,-198.666,-182.653,0,-159.473	1/2:91:0,46,45:0:0:46,45:1628,1593:-262.643,-130.038,-116.191,-132.959,0,-119.412	1/1:178:0,177,1:0:0:177,1:6196,36:-557.389,-53.2823,0,-554.451,-49.9851,-554.15	1/1:203:0,202,1:0:0:202,1:7029,36:-632.298,-60.8081,0,-629.36,-57.5108,-629.059	1/1:151:0,148,0:0:0:148,0:5169,0:-465.024,-44.5524,0,-465.024,-44.5524,-465.024	1/2:215:0,93,121:0:0:93,121:3285,4348:-621.24,-353.72,-325.724,-267.526,0,-231.101	1/2:201:0,104,97:0:0:104,97:3626,3464:-577.614,-282.726,-251.419,-295.241,0,-266.041	1/2:14:0,4,10:0:0:4,10:133,351:-39.6628,-28.9069,-27.7028,-11.0935,0,-8.08317	1/2:248:1,126,121:1:36:126,121:4371,4311:-702.926,-347.938,-312.946,-352.343,0,-318.856	1/2:70:0,33,35:0:0:33,35:1161,1248:-196.225,-101.717,-91.7832,-94.5019,0,-83.9659	1/2:21:0,13,8:0:0:13,8:461,288:-61.3896,-23.8344,-19.921,-37.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chr12	24578233	.	TACT	TACA,CACA	167869	PASS	AB=0.464789,0.530047;ABP=48.8865,36.4163;AC=140,48;AF=0.744681,0.255319;AN=188;AO=5627,2268;CIGAR=3M1X,1X2M1X;DP=7926;DPB=7926.5;DPRA=0,1.23833;EPP=12221.9,4927.91;EPPR=9.52472;GTI=2;LEN=1,4;MEANALT=1.8617,2.4;MQM=59.9454,53.4947;MQMR=60;NS=94;NUMALT=2;ODDS=0.312027;PAIRED=0,0;PAIREDR=0;PAO=0,2;PQA=0,72;PQR=0;PRO=0;QA=201352,79961;QR=94;RO=3;RPL=5627,2268;RPP=12221.9,4927.91;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=12221.9,4927.91;SAR=5627,2268;SRF=0;SRP=9.52472;SRR=3;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25,0:0:0:25,0:896,0:-80.9594,-7.52575,0,-80.9594,-7.52575,-80.9594	1/1:112:0,112,0:0:0:112,0:4005,0:-360.637,-33.7154,0,-360.637,-33.7154,-360.637	1/2:90:0,48,40:0:0:48,40:1728,1404:-254.861,-113.86,-99.4101,-141.017,0,-128.976	1/2:116:0,57,58:0:0:57,58:2025,2037:-330.33,-165.406,-148.248,-164.916,0,-147.457	1/2:49:0,18,30:0:0:18,30:644,1059:-138.522,-86.0043,-80.5857,-52.5986,0,-43.5677	1/2:43:0,24,19:0:0:24,19:860,672:-125.073,-54.9308,-47.7061,-70.4971,0,-64.7775	1/1:111:0,111,0:0:0:111,0:3972,0:-357.564,-33.4143,0,-357.564,-33.4143,-357.564	1/2:137:0,57,79:0:0:57,79:2029,2740:-386.816,-221.445,-204.286,-165.431,0,-141.65	1/2:80:0,39,41:0:0:39,41:1396,1449:-231.897,-118.053,-106.313,-114.199,0,-101.857	1/1:66:0,66,0:0:0:66,0:2376,0:-214.096,-19.868,0,-214.096,-19.868,-214.096	1/2:125:0,60,64:0:0:60,64:2152,2225:-356.255,-180.723,-162.661,-175.526,0,-156.26	1/2:106:0,39,66:0:0:39,66:1404,2314:-301.195,-186.631,-174.891,-114.592,0,-94.7244	1/2:116:0,54,62:0:0:54,62:1930,2157:-331.408,-174.039,-157.783,-157.721,0,-139.057	1/2:196:0,98,97:0:0:98,97:3500,3426:-563.366,-278.01,-248.509,-285.443,0,-256.243	1/1:84:0,84,0:0:0:84,0:3024,0:-272.389,-25.2865,0,-272.389,-25.2865,-272.389	1/2:98:0,36,62:0:0:36,62:1296,2172:-281.875,-176.124,-165.287,-106.107,0,-87.443	1/1:125:0,125,0:0:0:125,0:4492,0:-404.447,-37.6288,0,-404.447,-37.6288,-404.447	1/2:142:0,56,84:0:0:56,84:2016,2979:-405.256,-240.757,-223.9,-164.507,0,-139.22	1/1:109:0,109,0:0:0:109,0:3916,0:-352.627,-32.8123,0,-352.627,-32.8123,-352.627	1/1:96:0,96,0:0:0:96,0:3443,0:-309.454,-28.8989,0,-309.454,-28.8989,-309.454	1/2:85:0,41,42:0:0:41,42:1472,1483:-240.523,-120.444,-108.102,-120.115,0,-107.471	1/1:20:0,20,0:0:0:20,0:697,0:-63.0507,-6.0206,0,-63.0507,-6.0206,-63.0507	1/1:36:0,36,0:0:0:36,0:1266,0:-114.239,-10.8371,0,-114.239,-10.8371,-114.239	1/2:50:0,28,22:0:0:28,22:1004,782:-145.588,-63.6965,-55.2677,-82.247,0,-75.6244	1/2:25:0,9,16:0:0:9,16:324,568:-72.8755,-46.4365,-43.7272,-26.7966,0,-21.9801	1/2:124:0,55,69:0:0:55,69:1968,2439:-359.295,-198.812,-182.256,-160.838,0,-140.067	1/1:149:0,149,0:0:0:149,0:5315,0:-478.481,-44.8535,0,-478.481,-44.8535,-478.481	1/1:53:0,53,0:0:0:53,0:1902,0:-171.458,-15.9546,0,-171.458,-15.9546,-171.458	1/2:146:0,95,50:0:0:95,50:3408,1765:-420.964,-142.984,-114.386,-277.975,0,-262.923	1/2:60:0,24,36:0:0:24,36:860,1270:-173.705,-103.569,-96.3439,-70.4925,0,-59.6554	1/2:67:0,37,30:0:0:37,30:1328,1050:-193.735,-85.4036,-74.2655,-108.684,0,-99.6532	1/2:6:0,4,2:0:0:4,2:144,72:-17.975,-6.22497,-5.02085,-12.1095,0,-11.5074	1/1:12:0,12,0:0:0:12,0:432,0:-39.2212,-3.61236,0,-39.2212,-3.61236,-39.2212	1/1:10:0,10,0:0:0:10,0:360,0:-32.7443,-3.0103,0,-32.7443,-3.0103,-32.7443	1/2:9:0,3,6:0:0:3,6:104,216:-26.1999,-17.7497,-16.8467,-8.79971,0,-6.99353	1/2:15:0,9,6:0:0:9,6:324,204:-43.2948,-16.8457,-14.1364,-26.7966,0,-24.9904	1/2:218:0,108,110:0:0:108,110:3858,3887:-629.946,-315.397,-282.886,-314.904,0,-281.79	1/1:80:0,80,0:0:0:80,0:2841,0:-255.928,-24.0824,0,-255.928,-24.0824,-255.928	1/1:120:0,118,0:0:0:118,0:4228,0:-380.34,-35.5215,0,-380.34,-35.5215,-380.34	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/1:110:0,110,0:0:0:110,0:3941,0:-354.88,-33.1133,0,-354.88,-33.1133,-354.88	1/1:64:0,64,0:0:0:64,0:2300,0:-207.261,-19.2659,0,-207.261,-19.2659,-207.261	1/1:98:0,97,0:0:0:97,0:3479,0:-312.961,-29.1999,0,-312.961,-29.1999,-312.961	1/1:71:0,71,0:0:0:71,0:2552,0:-229.93,-21.3731,0,-229.93,-21.3731,-229.93	1/2:69:0,27,42:0:0:27,42:964,1474:-198.035,-119.44,-111.312,-78.949,0,-66.3058	1/2:42:0,21,21:0:0:21,21:752,740:-121.869,-60.5392,-54.2176,-61.6846,0,-55.363	1/1:78:0,78,0:0:0:78,0:2796,0:-251.88,-23.4803,0,-251.88,-23.4803,-251.88	1/1:93:0,93,0:0:0:93,0:3293,0:-296.156,-27.9958,0,-296.156,-27.9958,-296.156	1/1:70:0,70,0:0:0:70,0:2503,0:-225.522,-21.0721,0,-225.522,-21.0721,-225.522	1/2:129:0,36,92:0:0:36,92:1284,3216:-365.542,-260.87,-250.033,-104.667,0,-76.9721	1/2:98:0,51,47:0:0:51,47:1828,1667:-285.216,-136.124,-120.771,-149.448,0,-135.3	1/2:7:0,3,4:0:0:3,4:108,142:-20.7309,-11.9164,-11.0133,-9.17208,0,-7.96796	1/2:137:0,76,61:0:0:76,61:2705,2184:-398.385,-177.927,-155.049,-220.814,0,-202.451	1/2:27:0,11,16:0:0:11,16:396,571:-79.1204,-46.8072,-43.4959,-32.6714,0,-27.8549	1/2:10:0,6,3:0:0:6,3:212,108:-26.049,-8.78715,-6.98097,-17.2597,0,-16.3566	1/2:83:0,45,38:0:0:45,38:1620,1348:-242.198,-110.011,-96.4645,-132.544,0,-121.104	1/1:11:0,11,0:0:0:11,0:388,0:-35.2564,-3.31133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chr12	24578242	.	G	A	38288.2	PASS	AB=0.533349;ABP=43.5638;AC=48;AF=0.255319;AN=188;AO=2251;CIGAR=1X;DP=7826;DPB=7826;DPRA=1.22007;EPP=4890.99;EPPR=12100.3;GTI=2;LEN=1;MEANALT=1.05357;MQM=53.4767;MQMR=59.949;NS=94;NUMALT=1;ODDS=1.02566;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=80616;QR=199069;RO=5571;RPL=2251;RPP=4890.99;RPPR=12100.3;RPR=0;RUN=1;SAF=0;SAP=4890.99;SAR=2251;SRF=0;SRP=12100.3;SRR=5571;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0817	0/0:113:113,0:113:4048:0:0:0,-34.0164,-364.506	0/1:88:47,40:47:1684:40:1436:-102.49,0,-125.298	0/1:113:56,57:56:2008:57:2036:-149.055,0,-146.977	0/1:49:19,30:19:676:30:1076:-81.3991,0,-46.4175	0/1:41:22,19:22:788:19:680:-49.0195,0,-58.9026	0/0:109:107,2:107:3820:2:68:0,-26.3546,-337.434	0/1:131:56,75:56:2004:75:2684:-201.004,0,-141.199	0/1:79:38,41:38:1360:41:1468:-108.108,0,-98.9192	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.779	0/1:125:59,66:59:2103:66:2363:-175.046,0,-151.91	0/1:104:37,67:37:1319:67:2408:-183.278,0,-87.704	0/1:114:55,59:55:1972:59:2116:-154.12,0,-143.437	0/1:193:98,95:98:3500:95:3416:-247.978,0,-257.113	0/0:85:85,0:85:3036:0:0:0,-25.5875,-273.471	0/1:99:37,62:37:1328:62:2216:-168.798,0,-90.0203	0/0:124:124,0:124:4443:0:0:0,-37.3277,-400.025	0/1:142:56,86:56:2003:86:3084:-232.865,0,-137.797	0/0:109:109,0:109:3886:0:0:0,-32.8123,-349.93	0/0:96:96,0:96:3424:0:0:0,-28.8989,-308.002	0/1:85:42,43:42:1508:43:1543:-113.009,0,-110.427	0/0:20:20,0:20:708:0:0:0,-6.0206,-64.0456	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/1:50:28,22:28:1000:22:788:-55.7052,0,-75.2639	0/1:24:8,16:8:288:16:572:-44.3882,0,-19.0427	0/1:123:53,69:53:1877:69:2480:-186.166,0,-132.122	0/0:146:146,0:146:5224:0:0:0,-43.9504,-470.294	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/1:144:95,49:95:3388:49:1755:-113.754,0,-261.778	0/1:60:23,37:23:828:37:1317:-100.432,0,-56.7823	0/1:66:37,29:37:1316:29:1040:-73.6192,0,-98.8738	0/1:6:4,2:4:140:2:72:-5.02085,0,-11.1384	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/1:9:3,6:3:104:6:216:-16.8467,0,-6.99354	0/1:14:8,6:8:280:6:216:-15.5263,0,-21.3249	0/1:211:105,106:105:3752:106:3808:-276.955,0,-274.363	0/0:82:82,0:82:2916:0:0:0,-24.6845,-262.677	0/0:119:119,0:119:4263:0:0:0,-35.8226,-383.847	0/0:2:2,0:2:64:0:0:0,-0.60206,-6.07869	0/0:110:110,0:110:3912:0:0:0,-33.1133,-352.276	0/0:66:66,0:66:2356:0:0:0,-19.868,-212.299	0/0:97:97,0:97:3460:0:0:0,-29.1999,-311.613	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/1:69:26,43:26:936:43:1536:-116.074,0,-63.7884	0/1:42:21,21:21:740:21:752:-55.2891,0,-54.2801	0/0:77:77,0:77:2752:0:0:0,-23.1793,-247.922	0/0:94:94,0:94:3341:0:0:0,-28.2968,-300.628	0/0:68:67,0:67:2404:0:0:0,-20.169,-216.404	0/1:124:34,90:34:1220:90:3232:-252.687,0,-72.7791	0/1:97:50,47:50:1788:47:1688:-122.958,0,-132.003	0/1:8:4,4:4:144:4:144:-10.8958,0,-10.9054	0/1:133:75,58:75:2672:58:2076:-146.562,0,-200.688	0/1:25:10,15:10:352:15:532:-40.6382,0,-24.4924	0/1:10:7,3:7:252:3:108:-7.03954,0,-20.0187	0/1:82:44,38:44:1572:38:1364:-97.2703,0,-117.087	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2564	0/1:8:5,3:5:180:3:108:-7.66411,0,-14.1438	0/0:11:11,0:11:392:0:0:0,-3.31133,-35.6201	0/0:60:60,0:60:2144:0:0:0,-18.0618,-193.199	0/1:185:84,101:84:2991:101:3610:-267.579,0,-213.732	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:46:46,0:46:1656:0:0:0,-13.8474,-149.32	0/0:174:173,1:173:6192:1:36:0,-48.7835,-553.782	0/0:84:82,2:82:2936:2:72:0,-18.4595,-257.647	0/1:37:15,22:15:540:22:784:-58.8155,0,-37.7984	0/1:65:31,34:31:1112:34:1214:-89.7924,0,-80.8244	0/0:63:63,0:63:2252:0:0:0,-18.9649,-202.943	0/0:73:73,0:73:2603:0:0:0,-21.9752,-234.514	0/0:76:75,1:75:2680:1:36:0,-19.28,-237.468	0/1:168:72,96:72:2559:96:3436:-257.949,0,-179.984	0/1:15:7,8:7:252:8:284:-21.2608,0,-18.5135	0/0:63:63,0:63:2264:0:0:0,-18.9649,-203.085	0/0:70:70,0:70:2492:0:0:0,-21.0721,-224.534	0/1:147:63,84:63:2225:84:2983:-223.873,0,-156.262	0/0:127:127,0:127:4532:0:0:0,-38.2308,-408.049	0/0:131:131,0:131:4684:0:0:0,-39.4349,-421.721	0/1:132:65,67:65:2320:67:2408:-174.902,0,-169.319	0/1:17:12,5:12:432:5:176:-11.0286,0,-34.1037	0/0:76:75,1:75:2668:1:36:0,-19.2851,-236.773	0/1:86:39,47:39:1396:47:1666:-123.099,0,-100.051	0/0:138:137,1:137:4912:1:36:0,-37.9465,-438.632	0/0:122:122,0:122:4350:0:0:0,-36.7257,-391.673	0/1:127:66,61:66:2360:61:2188:-158.56,0,-174.428	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/0:147:144,3:144:5164:3:108:0,-34.1858,-454.831	0/1:62:21,40:21:756:40:1425:-109.002,0,-49.6454	0/0:99:99,0:99:3534:0:0:0,-29.802,-318.269	0/1:81:35,46:35:1260:46:1652:-123.849,0,-89.3221	0/1:143:67,76:67:2400:76:2724:-201.177,0,-173.21	0/1:198:93,105:93:3323:105:3764:-278.25,0,-239.684	0/1:67:24,43:24:855:43:1544:-118.959,0,-57.1012	0/0:27:26,1:26:928:1:36:0,-4.53213,-80.2426	0/0:141:141,0:141:5043:0:0:0,-42.4452,-454.016
chr12	24606511	.	T	C	21707.7	PASS	AB=0.451082;ABP=47.1997;AC=139;AF=0.739362;AN=188;AO=3009;CIGAR=1X;DP=4192;DPB=4192;DPRA=7.50179;EPP=6536.97;EPPR=2565.35;GTI=1;LEN=1;MEANALT=1.03226;MQM=20.8039;MQMR=22.2186;NS=94;NUMALT=1;ODDS=0.693455;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107768;QR=42316;RO=1180;RPL=0;RPP=6536.97;RPPR=2565.35;RPR=3009;RUN=1;SAF=3009;SAP=6536.97;SAR=0;SRF=1180;SRP=2565.35;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:15:0,15:0:0:15:540:-28.2894,-4.51545,0	1/1:41:0,41:0:0:41:1468:-76.8142,-12.3422,0	0/1:73:40,32:40:1436:32:1152:-38.0074,0,-60.565	0/1:95:66,29:66:2376:29:1040:-25.0815,0,-98.8248	0/1:37:24,13:24:860:13:468:-13.3065,0,-36.0383	0/1:37:21,16:21:756:16:572:-19.4472,0,-32.0685	1/1:71:0,71:0:0:71:2552:-129.095,-21.3731,0	0/1:69:52,17:52:1868:17:608:-11.5165,0,-86.0806	0/1:46:27,19:27:972:19:680:-21.9362,0,-41.8352	1/1:29:0,29:0:0:29:1040:-54.6509,-8.72987,0	0/1:19:10,9:10:360:9:324:-11.3904,0,-14.1471	0/1:33:15,18:15:536:18:644:-24.1471,0,-20.8569	0/1:26:12,14:12:432:14:504:-18.6728,0,-16.8382	0/1:27:13,14:13:468:14:504:-18.3718,0,-17.7202	1/1:36:0,36:0:0:36:1296:-66.5592,-10.8371,0	0/1:8:5,3:5:176:3:108:-3.4342,0,-7.6946	1/1:21:0,21:0:0:21:748:-39.3531,-6.32163,0	0/1:19:12,7:12:432:7:248:-6.9796,0,-18.2291	1/1:9:0,9:0:0:9:324:-16.2137,-2.70927,0	1/1:90:0,90:0:0:90:3198:-166.099,-27.0927,0	0/1:37:15,22:15:540:22:792:-30.3849,0,-18.81	1/1:78:0,78:0:0:78:2796:-146.443,-23.4803,0	1/1:39:0,38:0:0:38:1368:-71.1851,-11.4391,0	0/1:46:28,18:28:1004:18:633:-19.9051,0,-40.4773	0/1:48:28,20:28:1004:20:705:-23.059,0,-41.7024	0/1:183:94,89:94:3380:89:3192:-111.402,0,-129.453	1/1:88:0,88:0:0:88:3160:-164.981,-26.4906,0	1/1:5:0,5:0:0:5:180:-9.59829,-1.50515,0	0/1:184:101,83:101:3617:83:2969:-99.9113,0,-142.347	0/1:65:28,37:28:1004:37:1320:-50.2468,0,-35.0114	0/1:62:34,28:34:1216:28:1000:-33.0248,0,-47.7783	0/1:8:5,3:5:180:3:108:-3.4342,0,-7.45594	1/1:7:0,7:0:0:7:248:-13.2474,-2.10721,0	1/1:3:0,3:0:0:3:104:-6.07555,-0.90309,0	1/1:1:0,1:0:0:1:36:-2.08658,-0.30103,0	0/1:5:3,2:3:108:2:72:-2.45936,0,-4.87567	0/1:84:51,33:51:1819:33:1173:-36.0246,0,-76.4931	1/1:132:0,132:0:0:132:4740:-245.473,-39.736,0	1/1:11:0,11:0:0:11:396:-20.8658,-3.31133,0	0/1:3:1,2:1:36:2:72:-3.06142,0,-1.28006	1/1:44:0,44:0:0:44:1565:-81.9384,-13.2453,0	1/1:13:0,13:0:0:13:468:-24.4446,-3.91339,0	1/1:79:0,79:0:0:79:2836:-147.292,-23.7814,0	1/1:21:0,21:0:0:21:756:-39.4686,-6.32163,0	0/1:20:11,9:11:396:9:324:-9.92078,0,-15.7231	0/1:63:29,34:29:1044:34:1220:-44.8995,0,-38.1464	1/1:52:0,52:0:0:52:1860:-97.6321,-15.6536,0	1/1:88:0,88:0:0:88:3160:-164.02,-26.4906,0	1/1:52:0,52:0:0:52:1864:-97.0254,-15.6536,0	0/1:52:27,25:27:964:25:900:-31.3269,0,-37.3963	0/1:78:33,45:33:1184:45:1616:-60.6001,0,-41.2035	0/1:5:3,2:3:108:2:72:-2.45936,0,-4.60767	0/1:62:43,19:43:1548:19:680:-17.2077,0,-69.7561	0/1:26:16,10:16:568:10:354:-10.7904,0,-21.5584	0/1:8:3,5:3:104:5:180:-7.10058,0,-3.94447	0/1:60:37,23:37:1328:23:828:-25.2512,0,-54.7463	1/1:28:0,28:0:0:28:1004:-52.773,-8.42884,0	0/0:6:6,0:6:216:0:0:0,-1.80618,-12.0073	1/1:27:0,27:0:0:27:968:-49.4696,-8.12781,0	1/1:18:0,18:0:0:18:640:-33.976,-5.41854,0	0/1:58:30,28:30:1080:28:1004:-34.6879,0,-40.9938	1/1:3:0,3:0:0:3:108:-5.84244,-0.90309,0	1/1:42:0,42:0:0:42:1503:-77.4966,-12.6433,0	1/1:112:0,112:0:0:112:4004:-208.917,-33.7154,0	1/1:93:5,88:5:176:88:3130:-152.584,-18.5014,0	0/1:42:32,10:32:1144:10:360:-6.34466,0,-49.8909	0/1:72:43,29:43:1536:29:1036:-32.1496,0,-60.2213	1/1:76:1,75:1:36:75:2692:-137.937,-20.6951,0	1/1:6:0,6:0:0:6:216:-11.3871,-1.80618,0	1/1:36:0,36:0:0:36:1273:-66.9481,-10.8371,0	0/1:53:25,28:25:900:28:1008:-35.3273,0,-32.4997	0/1:10:3,7:3:108:7:252:-10.1655,0,-3.10252	1/1:69:0,69:0:0:69:2476:-129.748,-20.7711,0	1/1:29:0,29:0:0:29:1040:-54.6491,-8.72987,0	0/1:67:30,37:30:1080:37:1328:-48.9646,0,-38.1947	1/1:41:0,41:0:0:41:1464:-77.063,-12.3422,0	1/1:70:0,69:0:0:69:2456:-129.831,-20.7711,0	0/1:43:13,30:13:468:30:1080:-42.8823,0,-12.8751	0/1:9:3,6:3:108:6:216:-8.6778,0,-3.49209	1/1:27:0,27:0:0:27:964:-50.5253,-8.12781,0	0/1:53:36,17:36:1283:17:612:-16.1788,0,-59.9596	1/1:130:0,130:0:0:130:4668:-240.828,-39.1339,0	1/1:51:0,51:0:0:51:1836:-94.2069,-15.3525,0	0/1:22:10,12:10:360:12:432:-14.9561,0,-13.244	1/1:22:1,21:1:36:21:752:-36.4698,-4.43951,0	1/1:52:1,51:1:36:51:1832:-92.8989,-13.4704,0	0/1:12:6,6:6:216:6:216:-7.95175,0,-8.74514	1/1:29:0,29:0:0:29:1040:-54.3945,-8.72987,0	0/1:26:13,13:13:468:13:468:-15.7246,0,-19.0638	0/1:13:5,8:5:180:8:284:-11.3009,0,-6.30522	0/1:34:12,22:12:413:22:792:-31.2,0,-12.3364	0/1:24:18,6:18:648:6:216:-3.89225,0,-28.3606	1/1:46:0,46:0:0:46:1629:-84.5197,-13.8474,0	1/1:28:0,28:0:0:28:1004:-50.6352,-8.42884,0
chr12	24636398	.	CGGT	TGGA,CGGA	110246	PASS	AB=0.500987,0.492763;ABP=3.03601,4.39319;AC=137,51;AF=0.728723,0.271277;AN=188;AO=4805,1504;CIGAR=1X2M1X,3M1X;DP=6342;DPB=6342.25;DPRA=34.086,1.04889;EPP=10436.9,3268.9;EPPR=9.52472;GTI=4;LEN=4,1;MEANALT=1.88172,2.31481;MQM=31.8108,43.4362;MQMR=53.3333;NS=94;NUMALT=2;ODDS=0.624634;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=72,0;PQR=0;PRO=0;QA=169658,53817;QR=93;RO=3;RPL=4805,1504;RPP=10436.9,3268.9;RPPR=9.52472;RPR=0,0;RUN=1,1;SAF=0,0;SAP=10436.9,3268.9;SAR=4805,1504;SRF=0;SRP=9.52472;SRR=3;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24,0:0:0:24,0:827,0:-60.5635,-7.22472,0,-60.5635,-7.22472,-60.5635	1/1:224:0,223,1:0:0:223,1:7885,36:-572.83,-67.1297,0,-569.978,-63.928,-569.677	1/2:115:0,72,42:0:0:72,42:2510,1493:-277.626,-116.972,-95.2983,-160.736,0,-148.093	1/2:75:0,37,37:0:0:37,37:1316,1320:-197.304,-106.107,-94.9691,-91.1967,0,-80.0586	1/2:29:0,11,18:0:0:11,18:387,648:-77.7985,-51.2106,-47.8993,-26.9073,0,-21.4887	1/2:36:0,14,21:0:0:14,21:498,737:-88.1955,-56.7161,-52.5017,-31.5149,0,-25.1933	1/1:96:0,96,0:0:0:96,0:3380,0:-266.04,-28.8989,0,-266.04,-28.8989,-266.04	1/2:106:0,47,59:0:0:47,59:1668,2112:-269.687,-164.289,-150.14,-105.707,0,-87.9463	1/2:61:0,41,20:0:0:41,20:1454,712:-148.966,-56.6138,-44.2716,-92.6774,0,-86.6568	1/1:100:0,100,0:0:0:100,0:3485,0:-271.937,-30.103,0,-271.937,-30.103,-271.937	1/2:23:0,10,13:0:0:10,13:350,464:-61.6843,-36.9724,-33.9621,-25.0368,0,-21.1234	1/2:55:1,23,31:1:36:23,31:817,1101:-134.928,-83.7832,-79.7975,-48.4576,0,-42.0663	1/2:46:0,22,24:0:0:22,24:778,864:-117.829,-68.0502,-61.4275,-50.0938,0,-42.8691	1/2:51:1,27,23:1:35:27,23:957,813:-125.887,-62.1451,-56.8198,-61.2201,0,-57.1007	1/1:46:0,45,0:0:0:45,0:1594,0:-123.595,-13.5464,0,-123.595,-13.5464,-123.595	1/2:40:0,24,16:0:0:24,16:835,576:-102.539,-46.427,-39.2023,-56.4413,0,-51.6248	1/1:65:0,65,0:0:0:65,0:2323,0:-168.083,-19.567,0,-168.083,-19.567,-168.083	1/2:53:0,22,31:0:0:22,31:778,1116:-138.804,-88.5572,-81.9346,-50.5601,0,-41.2281	1/1:26:0,25,0:0:0:25,0:890,0:-64.9059,-7.52575,0,-64.9059,-7.52575,-64.9059	1/1:74:0,74,0:0:0:74,0:2613,0:-205.064,-22.2762,0,-205.064,-22.2762,-205.064	1/2:68:0,31,36:0:0:31,36:1089,1288:-175.717,-101.392,-92.0604,-74.3162,0,-63.4791	1/1:137:0,137,0:0:0:137,0:4810,0:-386.613,-41.2411,0,-386.613,-41.2411,-386.613	1/1:21:0,21,0:0:0:21,0:749,0:-58.2604,-6.32163,0,-58.2604,-6.32163,-58.2604	1/2:101:0,46,54:0:0:46,54:1620,1940:-262.036,-154.473,-140.625,-107.617,0,-91.3617	1/2:43:0,20,23:0:0:20,23:687,813:-112.522,-64.8914,-58.8708,-47.9511,0,-41.0274	1/2:257:0,126,129:0:0:126,129:4476,4616:-690.25,-368.278,-330.348,-322.031,0,-283.198	1/1:136:0,135,0:0:0:135,0:4744,0:-362.455,-40.6391,0,-362.455,-40.6391,-362.455	1/1:14:0,14,0:0:0:14,0:485,0:-36.9048,-4.21442,0,-36.9048,-4.21442,-36.9048	1/2:104:0,41,63:0:0:41,63:1454,2264:-285.995,-180.923,-168.58,-105.404,0,-86.4387	1/2:204:0,124,79:0:0:124,79:4422,2817:-519.98,-222.738,-185.41,-297.265,0,-273.483	1/2:47:0,23,24:0:0:23,24:818,845:-123.661,-67.0854,-60.1617,-56.8996,0,-49.6748	1/2:9:0,7,2:0:0:7,2:246,72:-22.9724,-6.11657,-4.00936,-17.1979,0,-16.5958	1/1:4:0,4,0:0:0:4,0:138,0:-11.055,-1.20412,0,-11.055,-1.20412,-11.055	1/1:6:0,6,0:0:0:6,0:207,0:-15.4732,-1.80618,0,-15.4732,-1.80618,-15.4732	1/2:8:0,2,6:0:0:2,6:72,212:-21.7526,-17.1433,-16.5412,-4.91319,0,-3.10701	1/2:4:0,3,1:0:0:3,1:108,36:-10.091,-3.20167,-2.29858,-7.22465,0,-6.92362	1/2:132:0,61,71:0:0:61,71:2180,2556:-360.52,-203.294,-184.931,-157.56,0,-136.187	1/1:242:0,242,0:0:0:242,0:8561,0:-652.858,-72.8493,0,-652.858,-72.8493,-652.858	1/1:38:0,38,0:0:0:38,0:1343,0:-97.3165,-11.4391,0,-97.3165,-11.4391,-97.3165	2/2:2:0,0,2:0:0:0,2:0,72:-6.26113,-6.26113,-6.26113,-0.60206,-0.60206,0	1/1:93:0,93,0:0:0:93,0:3270,0:-250.127,-27.9958,0,-250.127,-27.9958,-250.127	1/1:34:0,33,0:0:0:33,0:1164,0:-88.4329,-9.93399,0,-88.4329,-9.93399,-88.4329	1/1:68:0,68,0:0:0:68,0:2424,0:-182.79,-20.47,0,-182.79,-20.47,-182.79	1/1:53:0,51,0:0:0:51,0:1802,0:-139.678,-15.3525,0,-139.678,-15.3525,-139.678	1/2:47:0,28,19:0:0:28,19:995,684:-123.68,-55.0949,-46.666,-68.9189,0,-63.1993	1/2:78:0,37,41:0:0:37,41:1306,1476:-212.023,-118.195,-107.057,-94.161,0,-81.8188	1/1:95:0,94,0:0:0:94,0:3278,0:-240.126,-28.2968,0,-240.126,-28.2968,-240.126	1/1:124:0,124,0:0:0:124,0:4375,0:-342.359,-37.3277,0,-342.359,-37.3277,-342.359	1/1:122:0,121,1:0:0:121,1:4243,32:-332.25,-36.4246,0,-329.9,-33.7794,-329.599	1/2:81:0,47,34:0:0:47,34:1657,1201:-210.013,-96.6253,-82.4769,-113.716,0,-103.481	1/2:138:0,53,85:0:0:53,85:1858,3052:-379.727,-244.705,-228.751,-135.352,0,-109.765	1/2:4:0,2,2:0:0:2,2:72,72:-11.1581,-6.15931,-5.55725,-5.33285,0,-4.73079	1/2:85:0,48,34:0:0:48,34:1696,1224:-205.519,-96.8413,-82.3919,-108.735,0,-98.5002	1/2:18:0,10,7:0:0:10,7:353,252:-45.5984,-19.7767,-16.7664,-25.8413,0,-23.7341	1/2:13:0,2,11:0:0:2,11:72,392:-36.017,-31.4029,-30.8008,-4.91319,0,-1.60186	1/2:40:0,18,21:0:0:18,21:640,752:-102.228,-59.784,-54.3655,-42.5433,0,-36.2217	1/1:8:0,8,0:0:0:8,0:288,0:-22.8026,-2.40824,0,-22.802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chr12	24636592	.	G	A	93599.3	PASS	AB=0.471883;ABP=23.2803;AC=135;AF=0.725806;AN=186;AO=4451;CIGAR=1X;DP=6025;DPB=6025;DPRA=18.2242;EPP=9668.23;EPPR=3418.74;GTI=0;LEN=1;MEANALT=1.01111;MQM=59.909;MQMR=57.2289;NS=93;NUMALT=1;ODDS=2.49562;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=159312;QR=56390;RO=1573;RPL=4451;RPP=9668.23;RPPR=3418.74;RPR=0;RUN=1;SAF=0;SAP=9668.23;SAR=4451;SRF=0;SRP=3418.74;SRR=1573;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:85:0,85:0:0:85:3052:-274.909,-25.5876,0	0/1:133:72,61:72:2592:61:2192:-157.422,0,-192.986	0/1:157:97,60:97:3476:60:2148:-146.326,0,-265.443	0/1:32:19,13:19:684:13:460:-32.1024,0,-52.2401	0/1:42:24,18:24:860:18:640:-45.2861,0,-64.7727	1/1:89:0,89:0:0:89:3180:-286.425,-26.7917,0	0/1:82:34,48:34:1215:48:1705:-129.045,0,-84.7695	0/1:53:37,16:37:1328:16:568:-35.4973,0,-103.66	1/1:56:0,56:0:0:56:1985:-178.923,-16.8577,0	0/1:28:14,14:14:504:14:500:-36.9073,0,-37.2565	0/1:51:25,26:25:887:26:936:-69.2069,0,-64.7742	0/1:59:29,30:29:1044:30:1072:-79.0317,0,-76.308	0/1:49:21,28:21:756:28:995:-75.1135,0,-53.5121	1/1:54:0,54:0:0:54:1936:-174.516,-16.2556,0	0/1:50:21,29:21:756:29:1044:-79.137,0,-53.1237	1/1:53:0,53:0:0:53:1892:-170.452,-15.9546,0	0/1:61:31,30:31:1116:30:1072:-78.4296,0,-82.1748	1/1:32:0,32:0:0:32:1136:-102.549,-9.63296,0	1/1:120:0,120:0:0:120:4273:-384.703,-36.1236,0	0/1:78:46,32:46:1648:32:1148:-80.1495,0,-124.981	1/1:126:0,126:0:0:126:4516:-406.562,-37.9298,0	1/1:58:0,58:0:0:58:2080:-187.466,-17.4597,0	0/1:25:11,14:11:396:14:496:-37.4485,0,-28.4469	0/1:55:29,26:29:1040:26:932:-67.6422,0,-76.8873	0/1:239:126,113:126:4512:113:4044:-292.202,0,-333.172	1/1:171:0,171:0:0:171:6124:-551.259,-51.4761,0	1/1:21:0,21:0:0:21:756:-68.3672,-6.32163,0	0/1:202:118,84:118:4220:84:3016:-210.862,0,-318.685	0/1:40:14,26:14:504:26:928:-71.7971,0,-33.6441	0/1:62:38,24:38:1360:24:860:-59.058,0,-103.827	0/0:7:7,0:7:252:0:0:0,-2.10721,-22.9361	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:3:3,0:3:108:0:0:0,-0.90309,-9.98409	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	0/1:138:69,69:69:2468:69:2471:-181.101,0,-180.678	1/1:133:0,133:0:0:133:4754:-427.644,-40.037,0	1/1:38:0,38:0:0:38:1355:-121.821,-11.4391,0	.:.:.:.:.:.:.:.	1/1:90:0,90:0:0:90:3217:-289.751,-27.0927,0	1/1:31:0,31:0:0:31:1108:-100.031,-9.33193,0	1/1:84:0,84:0:0:84:3004:-270.592,-25.2865,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	0/1:43:22,21:22:792:21:743:-54.249,0,-58.6423	0/1:83:47,36:47:1680:36:1296:-91.9584,0,-126.117	1/1:69:0,69:0:0:69:2476:-223.089,-20.7711,0	1/1:107:0,107:0:0:107:3836:-345.436,-32.2102,0	1/1:80:0,80:0:0:80:2860:-257.638,-24.0824,0	0/1:53:25,28:25:888:28:1008:-75.0772,0,-64.2633	0/1:153:86,67:86:3073:67:2408:-170.918,0,-230.494	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89437	0/1:123:63,60:63:2264:60:2156:-156.91,0,-166.875	0/1:38:16,22:16:576:22:788:-59.3759,0,-40.6356	0/1:7:5,2:5:180:2:68:-4.3505,0,-14.4402	0/1:75:26,49:26:936:49:1745:-134.755,0,-61.9586	1/1:61:0,61:0:0:61:2192:-197.541,-18.3628,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93172	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:49:0,49:0:0:49:1760:-158.684,-14.7505,0	0/1:69:31,38:31:1107:38:1368:-102.65,0,-78.868	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:130:0,130:0:0:130:4656:-418.263,-39.1339,0	1/1:105:0,105:0:0:105:3760:-338.599,-31.6082,0	1/1:39:2,37:2:72:37:1328:-112.83,-4.90536,0	0/1:64:40,24:40:1440:24:860:-58.4109,0,-110.595	0/1:105:56,49:56:2008:49:1745:-125.724,0,-149.25	1/1:76:1,75:1:36:75:2677:-237.576,-19.281,0	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	1/1:38:0,37:0:0:37:1324:-119.244,-11.1381,0	0/1:55:22,33:22:788:33:1173:-89.3189,0,-54.5849	0/1:16:5,11:5:180:11:396:-31.1663,0,-11.731	1/1:77:0,77:0:0:77:2753:-248.006,-23.1793,0	1/1:44:0,44:0:0:44:1557:-140.42,-13.2453,0	0/1:61:23,38:23:820:38:1364:-104.698,0,-54.8589	1/1:106:0,106:0:0:106:3796:-341.837,-31.9092,0	1/1:94:0,94:0:0:94:3372:-303.321,-28.2968,0	0/1:43:17,26:17:608:26:932:-71.2546,0,-42.0928	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0757	1/1:70:0,70:0:0:70:2507:-225.882,-21.0721,0	0/1:98:62,36:62:2224:36:1288:-86.7226,0,-170.658	1/1:169:0,169:0:0:169:6037:-543.434,-50.8741,0	1/1:81:0,81:0:0:81:2916:-262.674,-24.3834,0	0/1:38:23,15:23:824:15:532:-36.7739,0,-62.9285	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	1/1:88:0,88:0:0:88:3147:-283.455,-26.4906,0	0/1:35:17,18:17:612:18:648:-48.1158,0,-43.9962	1/1:51:0,51:0:0:51:1827:-164.71,-15.3525,0	0/1:25:14,11:14:504:11:396:-28.457,0,-38.1596	0/1:21:13,8:13:468:8:288:-19.9458,0,-36.0305	0/1:48:33,15:33:1184:15:518:-32.4961,0,-92.3461	0/1:45:27,18:27:972:18:644:-44.7442,0,-74.0561	1/1:68:0,68:0:0:68:2444:-220.21,-20.47,0	1/1:80:0,80:0:0:80:2880:-259.349,-24.0824,0
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chr12	24666522	.	T	C	131749	PASS	AB=0.525363;ABP=24.9304;AC=140;AF=0.744681;AN=188;AO=6242;CIGAR=1X;DP=8123;DPB=8123;DPRA=17.4581;EPP=13496.6;EPPR=4083.21;GTI=4;LEN=1;MEANALT=1.02151;MQM=59.9801;MQMR=59.9739;NS=94;NUMALT=1;ODDS=0.781247;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222519;QR=67235;RO=1879;RPL=7;RPP=13496.6;RPPR=4083.21;RPR=6235;RUN=1;SAF=6242;SAP=13557.3;SAR=0;SRF=1879;SRP=4083.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:22:0,22:0:0:22:780:-70.523,-6.62266,0	1/1:145:0,145:0:0:145:5153:-463.914,-43.6494,0	0/1:141:54,87:54:1940:87:3128:-239.3,0,-132.431	0/1:140:68,72:68:2440:72:2567:-189.136,0,-177.711	0/1:82:38,44:38:1368:44:1572:-116.596,0,-98.7348	0/1:61:36,25:36:1284:25:887:-61.7853,0,-97.5006	1/1:113:0,113:0:0:113:4021:-362.079,-34.0164,0	0/1:158:74,84:74:2632:84:2995:-222.219,0,-189.293	0/1:57:17,40:17:608:40:1427:-111.568,0,-37.8933	1/1:86:0,86:0:0:86:3065:-276.078,-25.8886,0	0/1:60:24,36:24:852:36:1279:-97.3506,0,-58.9386	0/1:70:39,31:39:1396:31:1094:-77.6962,0,-104.867	0/1:65:40,25:40:1440:25:887:-60.5812,0,-110.331	0/1:70:34,36:34:1211:36:1292:-95.5117,0,-88.2234	1/1:60:0,60:0:0:60:2156:-194.307,-18.0618,0	0/1:52:27,25:27:968:25:883:-64.1339,0,-71.7838	1/1:92:0,92:0:0:92:3280:-295.419,-27.6948,0	0/1:56:34,22:34:1220:22:788:-54.3871,0,-93.2491	1/1:35:0,35:0:0:35:1244:-112.265,-10.5361,0	1/1:132:0,132:0:0:132:4689:-422.173,-39.736,0	0/1:114:49,65:49:1740:65:2315:-174.293,0,-122.567	1/1:111:2,108:2:72:108:3851:-339.95,-26.6364,0	1/1:29:0,29:0:0:29:1024:-92.4726,-8.72987,0	0/1:98:35,63:35:1252:63:2248:-173.081,0,-83.4841	1/1:76:0,76:0:0:76:2715:-244.593,-22.8783,0	0/1:252:110,142:110:3944:142:5066:-380.222,0,-279.292	1/1:190:0,190:0:0:190:6795:-611.622,-57.1957,0	1/1:30:0,30:0:0:30:1072:-96.7925,-9.0309,0	0/1:181:99,82:99:3548:82:2931:-209.538,0,-265.042	0/1:118:52,66:52:1841:66:2360:-177.135,0,-130.447	0/1:82:37,45:37:1324:45:1604:-119.966,0,-94.7776	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:7:0,7:0:0:7:248:-22.6642,-2.10721,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:210:102,108:102:3651:108:3841:-282.67,0,-265.577	1/1:141:0,141:0:0:141:5042:-453.925,-42.4452,0	1/1:63:0,63:0:0:63:2238:-201.683,-18.9649,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:127:1,126:1:36:126:4472:-399.051,-34.6325,0	1/1:24:0,24:0:0:24:855:-77.2702,-7.22472,0	1/1:110:0,110:0:0:110:3918:-352.814,-33.1133,0	1/1:74:0,74:0:0:74:2648:-238.567,-22.2762,0	0/1:70:39,31:39:1396:31:1108:-78.9583,0,-104.867	0/1:107:55,52:55:1955:52:1853:-134.839,0,-144.015	1/1:152:0,151:0:0:151:5395:-485.277,-45.4555,0	1/1:245:1,244:1:36:244:8703:-779.668,-70.1541,0	1/1:92:0,92:0:0:92:3257:-293.349,-27.6948,0	0/1:125:73,52:73:2620:52:1855:-129.6,0,-198.419	0/1:165:80,85:80:2876:85:3017:-222.083,0,-209.406	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/1:133:76,57:76:2711:57:2024:-142.396,0,-204.197	0/1:44:30,14:30:1061:14:504:-32.4528,0,-82.554	0/1:14:2,12:2:72:12:428:-34.6444,0,-2.6223	0/1:83:35,48:35:1260:48:1716:-129.74,0,-88.72	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	1/1:53:0,53:0:0:53:1875:-169.026,-15.9546,0	0/1:109:63,46:63:2260:46:1639:-114.986,0,-170.85	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:140:0,140:0:0:140:5018:-451.766,-42.1442,0	1/1:177:1,176:1:36:176:6299:-563.404,-49.684,0	1/1:75:5,70:5:180:70:2507:-209.33,-6.02519,0	0/1:51:26,25:26:923:25:896:-65.6078,0,-68.0342	0/1:151:71,80:71:2531:80:2841:-210.473,0,-182.586	1/1:97:0,97:0:0:97:3451:-310.803,-29.1999,0	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	1/1:72:0,72:0:0:72:2569:-231.459,-21.6742,0	0/1:79:36,43:36:1296:43:1535:-114.661,0,-93.1065	0/1:12:3,9:3:108:9:316:-25.1665,0,-6.46281	1/1:62:0,62:0:0:62:2202:-198.443,-18.6639,0	1/1:85:0,85:0:0:85:3042:-274.01,-25.5876,0	0/1:125:50,75:50:1800:75:2661:-202.107,0,-124.653	1/1:160:0,160:0:0:160:5722:-515.096,-48.1648,0	1/1:170:0,170:0:0:170:6042:-543.888,-51.1751,0	0/1:91:28,63:28:993:63:2216:-172.309,0,-62.2888	0/1:13:2,11:2:68:11:387:-31.2525,0,-2.54432	1/1:125:0,125:0:0:125:4438:-399.594,-37.6288,0	0/1:108:44,64:44:1584:64:2295:-174.3,0,-110.34	1/1:158:1,157:1:36:157:5540:-495.129,-43.9645,0	1/1:85:1,84:1:36:84:3000:-266.634,-21.9893,0	0/1:51:25,26:25:891:26:936:-69.2069,0,-65.1562	1/1:92:0,92:0:0:92:3276:-295.061,-27.6948,0	1/1:144:0,144:0:0:144:5132:-462.023,-43.3483,0	0/1:43:16,27:16:576:27:968:-74.4931,0,-39.2307	1/1:97:0,97:0:0:97:3475:-312.96,-29.1999,0	0/1:72:38,34:38:1368:34:1207:-87.2611,0,-101.747	0/1:42:18,24:18:648:24:846:-63.8145,0,-46.0086	0/1:64:29,35:29:1040:35:1256:-94.0794,0,-74.6484	0/1:78:45,33:45:1603:33:1184:-83.388,0,-121.079	1/1:84:0,84:0:0:84:2998:-270.051,-25.2865,0	1/1:89:0,89:0:0:89:3192:-287.503,-26.7917,0
chr12	24666525	.	T	C	31102	PASS	AB=0.476409;ABP=21.9643;AC=48;AF=0.255319;AN=188;AO=1883;CIGAR=1X;DP=8071;DPB=8071;DPRA=1.06125;EPP=4057.22;EPPR=13338.2;GTI=4;LEN=1;MEANALT=1.01923;MQM=59.9825;MQMR=59.9867;NS=94;NUMALT=1;ODDS=0.227061;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=67207;QR=221142;RO=6181;RPL=4;RPP=4057.22;RPPR=13338.2;RPR=1879;RUN=1;SAF=1883;SAP=4091.89;SAR=0;SRF=6181;SRP=13424.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:143:143,0:143:5110:0:0:0,-43.0473,-460.043	0/1:138:86,52:86:3048:52:1849:-125.146,0,-233.007	0/1:135:68,67:68:2444:67:2390:-174.718,0,-179.576	0/1:82:45,37:45:1611:37:1315:-93.965,0,-120.595	0/1:61:24,37:24:849:37:1316:-100.379,0,-58.365	0/0:112:111,0:111:3969:0:0:0,-33.4143,-357.178	0/1:153:81,72:81:2900:72:2545:-183.197,0,-215.178	0/1:55:38,17:38:1364:17:603:-38.0429,0,-106.504	0/0:87:87,0:87:3109:0:0:0,-26.1896,-280.035	0/1:58:36,22:36:1292:22:788:-53.7851,0,-99.124	0/1:70:30,40:30:1080:40:1419:-106.935,0,-76.4412	0/1:66:25,41:25:887:41:1472:-112.908,0,-60.2801	0/1:69:35,34:35:1260:34:1220:-89.3357,0,-92.9344	0/0:59:59,0:59:2124:0:0:0,-17.7608,-191.428	0/1:53:26,27:26:932:27:968:-71.4828,0,-68.2443	0/0:93:93,0:93:3332:0:0:0,-27.9958,-300.097	0/1:59:22,37:22:779:37:1320:-101.341,0,-52.6713	0/0:37:37,0:37:1328:0:0:0,-11.1381,-119.822	0/0:132:132,0:132:4744:0:0:0,-39.736,-427.116	0/1:115:64,51:64:2296:51:1824:-129.823,0,-172.283	0/0:110:108,2:108:3853:2:72:0,-26.2766,-340.128	0/0:26:26,0:26:928:0:0:0,-7.82678,-83.8383	0/1:96:61,34:61:2192:34:1208:-80.1073,0,-168.627	0/0:73:73,0:73:2624:0:0:0,-21.9752,-236.407	0/1:255:145,110:145:5154:110:3920:-276.229,0,-387.183	0/0:184:184,0:184:6580:0:0:0,-55.3895,-592.279	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/1:185:83,102:83:2980:102:3651:-273.103,0,-212.741	0/1:119:67,52:67:2408:52:1850:-130.952,0,-181.149	0/1:82:44,38:44:1546:38:1356:-97.656,0,-114.746	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:9:6,3:6:197:3:108:-7.3659,0,-15.3421	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:206:107,99:107:3844:99:3539:-256.707,0,-284.143	0/0:141:141,0:141:5052:0:0:0,-42.4452,-454.825	0/0:64:64,0:64:2292:0:0:0,-19.2659,-206.541	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:126:125,0:125:4465:0:0:0,-37.6287,-401.739	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/0:110:110,0:110:3931:0:0:0,-33.1133,-353.982	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/1:71:31,40:31:1112:40:1411:-105.911,0,-79.0182	0/1:109:53,56:53:1900:56:2004:-147.821,0,-138.466	0/0:155:155,0:155:5510:0:0:0,-46.6596,-495.982	0/0:235:234,1:234:8334:1:36:0,-67.1438,-746.469	0/0:91:89,0:89:3173:0:0:0,-26.7917,-285.556	0/1:123:52,71:52:1872:71:2540:-191.824,0,-131.732	0/1:167:85,82:85:3048:82:2944:-214.921,0,-224.221	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	0/1:134:59,75:59:2105:75:2679:-201.017,0,-149.379	0/1:46:15,31:15:540:31:1116:-86.9043,0,-35.0892	0/1:14:12,2:12:432:2:72:-2.6223,0,-35.0068	0/1:83:48,35:48:1716:35:1251:-87.9088,0,-129.74	0/0:15:15,0:15:521:0:0:0,-4.51545,-47.2163	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0826	0/0:51:51,0:51:1828:0:0:0,-15.3525,-164.779	0/1:111:47,64:47:1688:64:2287:-172.677,0,-118.793	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:135:135,0:135:4860:0:0:0,-40.639,-437.55	0/0:172:172,0:172:6161:0:0:0,-51.7772,-554.586	0/0:74:69,5:69:2464:5:180:0,-5.72415,-205.462	0/1:49:25,24:25:888:24:848:-61.8892,0,-65.4886	0/1:153:81,72:81:2908:72:2568:-185.313,0,-215.897	0/0:99:98,0:98:3524:0:0:0,-29.5009,-317.087	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:68:68,0:68:2413:0:0:0,-20.47,-217.425	0/1:75:40,35:40:1436:35:1256:-90.768,0,-106.96	0/1:12:9,3:9:316:3:108:-6.46281,0,-25.1665	0/0:60:60,0:60:2139:0:0:0,-18.0618,-192.777	0/0:84:84,0:84:3003:0:0:0,-25.2865,-270.501	0/1:125:76,49:76:2724:49:1733:-118.624,0,-207.774	0/0:160:160,0:160:5733:0:0:0,-48.1648,-516.084	0/0:171:171,0:171:6094:0:0:0,-51.4761,-548.552	0/1:90:61,29:61:2188:29:1036:-66.4612,0,-170.093	0/1:15:13,2:13:468:2:72:-2.32127,0,-37.9442	0/0:124:124,0:124:4436:0:0:0,-37.3277,-399.412	0/1:111:64,47:64:2277:47:1682:-118.253,0,-171.776	0/0:153:152,1:152:5432:1:36:0,-42.4593,-485.41	0/0:85:84,1:84:3016:1:36:0,-21.9893,-268.072	0/1:54:26,28:26:936:28:1000:-74.0598,0,-68.3038	0/0:86:86,0:86:3088:0:0:0,-25.8886,-278.147	0/0:144:143,0:143:5136:0:0:0,-43.0473,-462.129	0/1:43:28,15:28:1004:15:540:-35.9922,0,-77.7316	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:74:34,40:34:1220:40:1424:-106.181,0,-87.8306	0/1:41:23,18:23:828:18:648:-46.3097,0,-62.5019	0/1:63:35,28:35:1260:28:1000:-71.3505,0,-94.7406	0/1:75:31,44:31:1116:44:1571:-119.104,0,-78.1744	0/0:87:87,0:87:3101:0:0:0,-26.1896,-279.316	0/0:88:88,0:88:3147:0:0:0,-26.4906,-283.455
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chr12	24763745	.	C	T	33350.5	PASS	AB=0.518606;ABP=14.4041;AC=47;AF=0.255435;AN=184;AO=1987;CIGAR=1X;DP=7590;DPB=7590;DPRA=1.0573;EPP=4317.73;EPPR=12163.3;GTI=1;LEN=1;MEANALT=1.03704;MQM=59.8671;MQMR=59.9763;NS=92;NUMALT=1;ODDS=0.735477;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=70863;QR=198805;RO=5600;RPL=1987;RPP=4317.73;RPPR=12163.3;RPR=0;RUN=1;SAF=1987;SAP=4317.73;SAR=0;SRF=5600;SRP=12163.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:67:67,0:67:2391:0:0:0,-20.169,-215.447	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/1:136:50,86:50:1776:86:3088:-237.174,0,-119.183	0/1:160:82,78:82:2903:78:2764:-200.792,0,-213.34	0/1:44:20,24:20:707:24:864:-64.8372,0,-50.7093	0/1:37:11,26:11:396:26:902:-70.283,0,-24.8446	0/0:77:77,0:77:2692:0:0:0,-23.1793,-242.523	0/1:132:65,67:65:2264:67:2379:-174.627,0,-164.283	0/1:75:41,34:41:1464:34:1212:-86.8091,0,-109.479	0/0:82:82,0:82:2944:0:0:0,-24.6845,-265.18	0/1:53:28,25:28:986:25:892:-64.2739,0,-73.0976	0/1:115:51,64:51:1808:64:2279:-170.753,0,-128.383	0/1:91:45,46:45:1607:46:1648:-121.215,0,-117.526	0/1:74:38,36:38:1352:36:1292:-94.3075,0,-99.7041	0/0:82:82,0:82:2914:0:0:0,-24.6845,-262.495	0/1:57:30,27:30:1055:27:968:-70.2787,0,-78.1013	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/1:56:24,32:24:851:32:1148:-86.7722,0,-60.0518	0/0:35:35,0:35:1216:0:0:0,-10.536,-109.74	0/0:167:167,0:167:5902:0:0:0,-50.272,-531.29	0/1:137:68,69:68:2440:69:2433:-177.982,0,-178.614	0/0:80:80,0:80:2876:0:0:0,-24.0824,-259.076	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/1:55:32,23:32:1135:23:811:-56.7389,0,-85.9014	0/0:74:74,0:74:2635:0:0:0,-22.2762,-237.24	0/1:352:182,170:182:6468:170:6055:-439.075,0,-476.202	0/0:246:245,0:245:8674:0:0:0,-73.7523,-780.295	0/0:29:29,0:29:1036:0:0:0,-8.72987,-93.5539	0/1:177:90,87:90:3159:87:3116:-227.384,0,-231.251	0/1:63:34,29:34:1224:29:1036:-74.589,0,-91.5006	0/1:105:59,46:59:2106:46:1608:-113.396,0,-158.2	0/1:7:1,6:1:36:6:216:-17.6833,0,-1.49106	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	.:.:.:.:.:.:.:.	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:191:90,101:90:3220:101:3611:-267.696,0,-232.503	0/0:119:119,0:119:4226:0:0:0,-35.8226,-380.52	0/0:46:46,0:46:1625:0:0:0,-13.8474,-146.537	.:.:.:.:.:.:.:.	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:37:37,0:37:1313:0:0:0,-11.1381,-118.47	0/0:96:96,0:96:3435:0:0:0,-28.8989,-309.363	0/0:67:67,0:67:2375:0:0:0,-20.169,-214.008	0/0:68:68,0:68:2293:0:0:0,-20.47,-206.622	0/1:103:53,50:53:1896:50:1788:-130.197,0,-139.884	0/0:97:96,1:96:3392:1:36:0,-25.6016,-301.895	0/0:122:120,2:120:4259:2:72:0,-29.8889,-376.652	0/0:80:77,3:77:2717:3:104:0,-14.3796,-235.06	0/1:127:48,77:48:1693:77:2752:-209.934,0,-114.666	0/1:55:25,30:25:896:30:1076:-80.5962,0,-64.4037	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:110:50,60:50:1783:60:2143:-160.019,0,-127.639	0/1:79:39,40:39:1377:40:1431:-105.302,0,-100.445	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:111:42,69:42:1482:69:2448:-187.147,0,-100.259	0/0:31:30,1:30:1076:1:32:0,-6.13262,-93.9535	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	0/0:10:10,0:10:356:0:0:0,-3.0103,-32.3812	0/0:74:74,0:74:2628:0:0:0,-22.2762,-236.766	0/1:102:59,43:59:2112:43:1527:-107.017,0,-159.644	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:122:122,0:122:4352:0:0:0,-36.7257,-391.856	0/0:129:128,1:128:4569:1:36:0,-35.2346,-407.777	0/0:81:75,6:75:2681:6:216:0,-4.59292,-221.743	0/1:53:23,30:23:820:30:1064:-80.1171,0,-58.1679	0/1:126:67,59:67:2378:59:2124:-153.47,0,-176.345	0/0:121:121,0:121:4318:0:0:0,-36.4246,-388.796	0/0:44:44,0:44:1537:0:0:0,-13.2453,-138.62	0/0:52:52,0:52:1845:0:0:0,-15.6536,-166.328	0/1:55:29,26:29:1015:26:932:-67.6422,0,-75.1042	0/1:11:5,6:5:176:6:216:-16.4503,0,-12.8737	0/0:87:85,2:85:3009:2:72:0,-19.3529,-264.205	0/0:46:45,1:45:1599:1:36:0,-10.2491,-140.601	0/1:134:55,79:55:1945:79:2798:-211.71,0,-134.986	0/0:114:114,0:114:4065:0:0:0,-34.3174,-366.037	0/0:145:145,0:145:5138:0:0:0,-43.6493,-462.555	0/1:96:40,56:40:1415:56:2012:-152.454,0,-98.7477	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:61:61,0:61:2176:0:0:0,-18.3628,-196.107	0/1:114:69,45:69:2456:45:1616:-111.413,0,-186.949	0/0:161:161,0:161:5751:0:0:0,-48.4658,-517.704	0/0:72:72,0:72:2531:0:0:0,-21.6742,-228.04	0/1:77:34,43:34:1220:43:1539:-115.595,0,-86.9275	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.663	0/0:151:151,0:151:5364:0:0:0,-45.4555,-482.895	0/1:28:11,17:11:388:17:612:-46.9846,0,-26.8285	0/0:95:95,0:95:3347:0:0:0,-28.5978,-301.445	0/1:83:42,41:42:1508:41:1476:-108.151,0,-111.029	0/1:37:26,11:26:924:11:388:-24.1193,0,-72.3395	0/1:93:36,57:36:1272:57:2023:-154.334,0,-86.7871	0/1:65:21,44:21:739:44:1576:-122.565,0,-47.2654	0/0:91:90,1:90:3177:1:36:0,-23.7955,-282.557	0/0:105:105,0:105:3714:0:0:0,-31.6081,-334.462
chr12	24763969	.	C	T	116959	PASS	AB=0.511818;ABP=7.32147;AC=134;AF=0.72043;AN=186;AO=5496;CIGAR=1X;DP=7259;DPB=7259;DPRA=25.7209;EPP=11928.7;EPPR=3831.32;GTI=2;LEN=1;MEANALT=1;MQM=59.9893;MQMR=60;NS=93;NUMALT=1;ODDS=2.24705;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=196863;QR=62764;RO=1763;RPL=18;RPP=11781.6;RPPR=3796.65;RPR=5478;RUN=1;SAF=17;SAP=11790.2;SAR=5479;SRF=4;SRP=3796.65;SRR=1759;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:24:0,24:0:0:24:845:-76.3671,-7.22472,0	1/1:108:0,108:0:0:108:3878:-349.214,-32.5112,0	0/1:74:25,49:25:900:49:1748:-135.328,0,-59.0448	0/1:166:96,70:96:3399:70:2512:-176.361,0,-256.151	0/1:24:15,9:15:540:9:320:-21.9176,0,-41.7118	0/1:28:18,10:18:633:10:360:-24.3155,0,-48.8662	1/1:120:0,120:0:0:120:4307:-387.805,-36.1236,0	0/1:121:61,60:61:2192:60:2156:-157.882,0,-161.121	0/1:55:22,33:22:784:33:1188:-90.6719,0,-54.3273	1/1:95:0,95:0:0:95:3420:-308.012,-28.5979,0	0/1:59:26,33:26:915:33:1180:-88.7473,0,-64.9048	0/1:73:29,44:29:1023:44:1572:-119.796,0,-70.4065	0/1:73:36,37:36:1288:37:1326:-97.6667,0,-94.2484	0/1:84:37,47:37:1291:47:1669:-125.209,0,-91.2009	1/1:67:0,67:0:0:67:2383:-214.726,-20.169,0	0/1:57:27,30:27:959:30:1080:-80.3545,0,-69.4667	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:47:19,28:19:684:28:1004:-76.5275,0,-47.7419	1/1:50:0,50:0:0:50:1786:-161.022,-15.0515,0	1/1:118:2,116:2:68:116:4168:-368.843,-29.0638,0	0/1:133:73,60:73:2584:60:2150:-153.729,0,-192.771	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	1/1:85:0,85:0:0:85:3045:-274.278,-25.5876,0	0/1:95:49,46:49:1752:46:1656:-120.731,0,-129.366	1/1:42:1,41:1:36:41:1457:-127.826,-9.04499,0	0/1:257:123,134:123:4412:134:4780:-352.935,0,-319.887	1/1:170:0,170:0:0:170:6102:-549.279,-51.1751,0	1/1:38:0,38:0:0:38:1364:-123.061,-11.4391,0	0/1:197:95,102:95:3391:102:3652:-269.579,0,-246.102	0/1:120:48,72:48:1712:72:2580:-196.326,0,-118.242	0/1:91:53,38:53:1889:38:1365:-95.7571,0,-142.893	0/0:4:4,0:4:135:0:0:0,-1.20412,-12.4825	1/1:10:0,10:0:0:10:360:-32.7443,-3.0103,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:220:96,124:96:3391:124:4441:-333.633,0,-239.179	1/1:114:0,114:0:0:114:4084:-367.745,-34.3174,0	1/1:61:0,61:0:0:61:2175:-196.016,-18.3628,0	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	1/1:76:0,76:0:0:76:2723:-245.313,-22.8783,0	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	1/1:48:0,48:0:0:48:1716:-154.726,-14.4494,0	1/1:45:0,45:0:0:45:1607:-144.919,-13.5464,0	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	0/1:50:32,18:32:1152:18:640:-42.8778,0,-88.9386	1/1:62:0,62:0:0:62:2224:-200.424,-18.6639,0	1/1:106:0,106:0:0:106:3801:-342.286,-31.9092,0	1/1:100:0,100:0:0:100:3580:-322.407,-30.103,0	0/1:120:59,61:59:2103:61:2196:-161.782,0,-153.415	0/1:112:56,56:56:2012:56:2000:-146.558,0,-147.638	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/1:56:33,23:33:1166:23:824:-57.6256,0,-88.3879	0/1:44:20,24:20:720:24:841:-62.761,0,-51.8835	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:102:48,54:48:1703:54:1940:-144.171,0,-122.85	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:6:4,2:4:144:2:67:-4.55666,0,-11.5074	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:91:0,91:0:0:91:3268:-294.34,-27.3937,0	0/1:109:52,57:52:1824:57:2044:-151.42,0,-131.626	.:.:.:.:.:.:.:.	1/1:167:0,167:0:0:167:5987:-538.935,-50.272,0	1/1:151:0,151:0:0:151:5414:-487.389,-45.4555,0	1/1:64:1,63:1:36:63:2251:-199.254,-15.6676,0	0/1:44:14,30:14:504:30:1080:-84.2679,0,-32.4528	0/1:107:51,56:51:1819:56:2012:-149.143,0,-131.78	1/1:143:0,143:0:0:143:5131:-461.93,-43.0473,0	1/1:36:3,33:3:108:33:1167:-95.2612,-0.76191,0	1/1:78:0,78:0:0:78:2781:-250.53,-23.4803,0	0/1:97:46,51:46:1630:51:1836:-136.321,0,-117.787	0/1:21:7,14:7:252:14:500:-39.0145,0,-16.7073	1/1:166:0,166:0:0:166:5944:-535.068,-49.971,0	1/1:53:2,51:2:72:51:1832:-158.324,-9.11787,0	0/1:136:77,59:77:2756:59:2112:-149.409,0,-207.342	1/1:86:0,86:0:0:86:3084:-277.788,-25.8886,0	1/1:55:0,55:0:0:55:1976:-178.115,-16.5567,0	0/1:78:34,44:34:1215:44:1584:-119.371,0,-86.1754	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:77:0,77:0:0:77:2768:-248.584,-23.1793,0	0/1:68:40,28:40:1432:28:980:-68.0407,0,-108.708	1/1:183:0,183:0:0:183:6545:-589.131,-55.0885,0	1/1:94:0,94:0:0:94:3376:-304.055,-28.2968,0	0/1:65:36,29:36:1277:29:1036:-73.9864,0,-95.6642	1/1:67:0,67:0:0:67:2395:-215.806,-20.169,0	1/1:140:3,137:3:108:137:4924:-433.233,-32.069,0	0/1:34:14,20:14:504:20:711:-54.0806,0,-35.4631	1/1:73:0,73:0:0:73:2602:-234.429,-21.9752,0	0/1:57:25,32:25:876:32:1140:-85.7505,0,-61.9983	0/1:54:20,34:20:712:34:1220:-93.8512,0,-48.151	0/1:142:78,64:78:2761:64:2287:-163.343,0,-205.985	0/1:59:33,26:33:1188:26:928:-66.0775,0,-89.4678	1/1:108:0,108:0:0:108:3865:-348.043,-32.5112,0	1/1:85:0,85:0:0:85:3051:-274.819,-25.5876,0
chr12	24769448	.	T	C	134468	PASS	AB=0.493314;ABP=4.57841;AC=140;AF=0.752688;AN=186;AO=6495;CIGAR=1X;DP=8556;DPB=8556;DPRA=92.9891;EPP=14106.7;EPPR=4463.21;GTI=1;LEN=1;MEANALT=1.05435;MQM=48.0787;MQMR=58.4338;NS=93;NUMALT=1;ODDS=1.56824;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=231380;QR=70613;RO=2054;RPL=0;RPP=14106.7;RPPR=4463.21;RPR=6495;RUN=1;SAF=6495;SAP=14106.7;SAR=0;SRF=2054;SRP=4463.21;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:26:0,26:0:0:26:924:-82.6092,-7.82678,0	1/1:140:0,140:0:0:140:4964:-441.237,-42.1442,0	0/1:136:60,76:60:2072:76:2716:-199.992,0,-145.484	0/1:194:108,85:108:3737:85:3036:-212.866,0,-277.689	0/1:57:29,28:29:1004:28:1004:-72.5795,0,-73.5117	0/1:48:27,21:27:936:21:748:-52.0708,0,-69.9528	1/1:33:0,33:0:0:33:1180:-105.77,-9.93399,0	0/1:160:75,85:75:2563:85:3013:-219.209,0,-181.932	0/1:37:21,16:21:705:16:572:-40.1215,0,-52.587	1/1:83:0,83:0:0:83:2961:-265.279,-24.9855,0	0/1:56:31,25:31:1077:25:888:-62.3387,0,-80.347	0/1:42:20,22:20:680:22:776:-56.203,0,-48.827	0/1:62:22,40:22:772:40:1432:-108.601,0,-51.1181	0/1:82:45,37:45:1528:37:1319:-92.9256,0,-112.764	1/1:47:0,47:0:0:47:1680:-149.955,-14.1484,0	0/1:44:17,27:17:579:27:963:-73.1451,0,-38.9892	1/1:56:0,56:0:0:56:2008:-176.948,-16.8577,0	0/1:38:18,20:18:613:20:720:-52.9792,0,-43.9523	1/1:13:0,13:0:0:13:464:-41.6335,-3.91339,0	1/1:229:0,229:0:0:229:8165:-728.597,-68.9359,0	0/1:110:56,54:56:1895:54:1913:-137.622,0,-137.546	1/1:147:0,146:0:0:146:5174:-462.384,-43.9504,0	1/1:21:0,21:0:0:21:752:-66.7954,-6.32163,0	0/1:71:32,39:32:1109:39:1392:-100.808,0,-78.2964	1/1:69:0,69:0:0:69:2476:-216.37,-20.7711,0	0/1:263:154,109:154:5300:109:3888:-268.808,0,-397.325	1/1:212:0,212:0:0:212:7557:-673.477,-63.8184,0	1/1:34:0,34:0:0:34:1190:-106.111,-10.235,0	0/1:323:180,143:180:6162:143:5078:-357.058,0,-456.09	0/1:176:99,76:99:3434:76:2716:-188.264,0,-256.278	0/1:44:21,23:21:712:23:828:-61.2647,0,-50.8318	.:.:.:.:.:.:.:.	1/1:12:0,12:0:0:12:428:-38.4376,-3.61236,0	1/1:4:0,4:0:0:4:144:-13.1669,-1.20412,0	0/1:5:3,2:3:108:2:68:-4.89944,0,-8.5672	0/1:3:1,2:1:36:2:68:-5.5015,0,-2.69418	0/1:161:90,71:90:3076:71:2527:-177.108,0,-228.349	1/1:234:0,232:0:0:232:8240:-734.802,-69.839,0	1/1:50:0,50:0:0:50:1775:-157.325,-15.0515,0	0/1:4:3,1:3:104:1:36:-2.04204,0,-8.49869	1/1:325:0,325:0:0:325:11501:-1023.88,-97.8348,0	1/1:37:0,37:0:0:37:1323:-118.374,-11.1381,0	1/1:146:1,145:1:21:145:5152:-457.48,-41.8504,0	1/1:44:0,44:0:0:44:1571:-140.237,-13.2453,0	1/1:51:0,51:0:0:51:1820:-162.449,-15.3525,0	0/1:87:34,53:34:1184:53:1869:-140.591,0,-80.6557	1/1:114:0,114:0:0:114:4076:-361.265,-34.3174,0	1/1:185:2,183:2:68:183:6527:-573.59,-49.2328,0	1/1:117:0,117:0:0:117:4177:-372.626,-35.2205,0	0/1:121:55,66:55:1885:66:2349:-173.208,0,-133.021	0/1:147:60,87:60:2043:87:3112:-234.406,0,-139.753	0/1:7:3,4:3:108:4:140:-10.7717,0,-7.96796	0/1:257:112,145:112:3903:145:5161:-380.162,0,-273.374	0/1:42:30,12:30:1052:12:428:-25.2675,0,-82.3449	0/1:12:7,5:7:248:5:180:-12.7573,0,-19.0478	0/1:165:79,86:79:2684:86:3076:-223.94,0,-191.808	1/1:14:0,14:0:0:14:500:-44.7824,-4.21442,0	1/1:14:0,14:0:0:14:500:-45.0703,-4.21442,0	1/1:4:0,4:0:0:4:140:-12.8471,-1.20412,0	1/1:63:0,63:0:0:63:2256:-201.571,-18.9649,0	0/1:137:61,76:61:2089:76:2692:-198.585,0,-147.037	1/1:2:0,2:0:0:2:72:-6.80779,-0.60206,0	1/1:144:0,144:0:0:144:5140:-458.66,-43.3483,0	1/1:189:2,187:2:68:187:6657:-588.918,-50.4373,0	1/1:91:2,89:2:72:89:3168:-275.06,-20.557,0	0/1:92:42,50:42:1449:50:1788:-132.663,0,-102.292	0/1:93:35,58:35:1220:58:2072:-157.503,0,-82.0676	1/1:132:1,131:1:36:131:4684:-414.932,-36.1377,0	1/1:28:0,28:0:0:28:991:-88.2014,-8.42884,0	1/1:85:0,85:0:0:85:3037:-268.245,-25.5876,0	0/1:101:56,45:56:1923:45:1594:-112.341,0,-142.762	0/1:20:8,12:8:265:12:432:-32.4006,0,-18.1153	1/1:114:0,114:0:0:114:4024:-354.221,-34.3174,0	1/1:50:0,50:0:0:50:1784:-157.997,-15.0515,0	0/1:67:35,32:35:1188:32:1144:-81.8134,0,-87.0023	1/1:226:0,224:0:0:224:8028:-718.425,-67.4307,0	1/1:112:1,111:1:36:111:3956:-346.155,-30.1197,0	0/1:111:66,45:66:2252:45:1608:-109.613,0,-169.481	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59727	1/1:135:0,135:0:0:135:4803:-427.425,-40.6391,0	0/1:130:66,64:66:2251:64:2284:-163.912,0,-163.502	1/1:204:0,204:0:0:204:7290:-650.055,-61.4101,0	1/1:96:0,96:0:0:96:3444:-306.907,-28.8989,0	0/1:48:23,25:23:796:25:900:-66.1035,0,-57.3054	1/1:60:0,60:0:0:60:2151:-190.577,-18.0618,0	1/1:94:0,94:0:0:94:3372:-301.429,-28.2968,0	0/1:37:23,14:23:805:14:500:-33.6723,0,-60.9824	1/1:63:0,63:0:0:63:2224:-197.797,-18.9649,0	0/1:52:25,27:25:857:27:964:-70.485,0,-61.6571	0/1:41:16,25:16:560:25:888:-67.0913,0,-38.3672	0/1:97:55,42:55:1923:42:1487:-103.155,0,-143.978	0/1:58:41,17:41:1389:17:608:-37.3688,0,-107.777	1/1:93:0,93:0:0:93:3294:-293.271,-27.9958,0	1/1:75:0,75:0:0:75:2659:-238.14,-22.5773,0
chr12	24812153	.	T	A	33918.5	PASS	AB=0.482701;ABP=13.9788;AC=48;AF=0.255319;AN=188;AO=2045;CIGAR=1X;DP=9045;DPB=9045;DPRA=0.877448;EPP=4434.99;EPPR=15146.9;GTI=4;LEN=1;MEANALT=1.01887;MQM=59.9848;MQMR=59.9844;NS=94;NUMALT=1;ODDS=1.10447;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73013;QR=250215;RO=6998;RPL=2044;RPP=4434.99;RPPR=15138.2;RPR=1;RUN=1;SAF=2045;SAP=4443.67;SAR=0;SRF=6997;SRP=15190.3;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:55:54,0:54:1935:0:0:0,-16.2556,-174.066	0/0:150:150,0:150:5360:0:0:0,-45.1545,-482.534	0/1:155:81,74:81:2901:74:2656:-192.626,0,-214.664	0/1:208:108,100:108:3860:100:3592:-260.871,0,-284.792	0/1:105:53,52:53:1908:52:1864:-136.431,0,-140.389	0/1:37:16,21:16:572:21:752:-56.8681,0,-40.6753	0/0:123:123,0:123:4401:0:0:0,-37.0267,-396.261	0/1:115:60,55:60:2156:55:1961:-142.145,0,-159.688	0/1:78:34,44:34:1216:44:1565:-117.659,0,-86.2662	0/0:105:105,0:105:3776:0:0:0,-31.6081,-340.037	0/1:84:49,35:49:1751:35:1260:-88.419,0,-132.587	0/1:107:47,60:47:1673:60:2137:-160.386,0,-118.645	0/1:81:43,38:43:1540:38:1349:-97.3248,0,-114.51	0/1:68:38,30:38:1364:30:1080:-77.0432,0,-102.591	0/0:60:60,0:60:2141:0:0:0,-18.0618,-192.956	0/1:73:32,41:32:1128:41:1472:-110.801,0,-79.8503	0/0:83:83,0:83:2969:0:0:0,-24.9855,-267.433	0/1:61:24,37:24:860:37:1311:-99.9266,0,-59.359	0/0:76:76,0:76:2720:0:0:0,-22.8783,-245.043	0/0:182:182,0:182:6498:0:0:0,-54.7875,-584.903	0/1:122:57,65:57:2044:65:2308:-171.254,0,-147.506	0/0:94:94,0:94:3380:0:0:0,-28.2968,-304.414	0/0:92:91,1:91:3252:1:21:0,-25.5949,-290.802	0/1:115:55,60:55:1976:60:2152:-159.329,0,-143.496	0/0:93:93,0:93:3325:0:0:0,-27.9958,-299.466	0/1:208:133,75:133:4760:75:2664:-177.391,0,-365.944	0/0:147:147,0:147:5280:0:0:0,-44.2514,-475.334	0/0:50:50,0:50:1785:0:0:0,-15.0515,-160.931	0/1:306:147,159:147:5215:159:5653:-416.755,0,-377.345	0/1:78:33,45:33:1165:45:1563:-117.474,0,-81.6747	0/1:123:66,57:66:2360:57:2044:-147.205,0,-175.632	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/1:9:7,2:7:252:2:72:-4.12745,0,-20.3197	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:241:121,120:121:4348:120:4312:-315.706,0,-318.945	0/0:210:210,0:210:7511:0:0:0,-63.2163,-676.025	0/0:100:100,0:100:3592:0:0:0,-30.103,-323.486	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/0:182:182,0:182:6493:0:0:0,-54.7875,-584.453	0/0:49:49,0:49:1745:0:0:0,-14.7505,-157.332	0/0:176:176,0:176:6270:0:0:0,-52.9813,-564.394	0/0:84:84,0:84:2997:0:0:0,-25.2865,-269.957	0/0:76:76,0:76:2716:0:0:0,-22.8783,-244.684	0/1:103:47,56:47:1669:56:1984:-147.828,0,-119.489	0/0:87:86,1:86:3076:1:36:0,-22.5913,-273.462	0/0:130:130,0:130:4672:0:0:0,-39.1339,-420.639	0/0:106:106,0:106:3758:0:0:0,-31.9092,-338.419	0/1:102:48,54:48:1705:54:1928:-143.092,0,-123.029	0/0:127:127,0:127:4556:0:0:0,-38.2308,-410.149	0/1:7:4,3:4:144:3:108:-7.96796,0,-11.2064	0/1:201:112,89:112:4005:89:3172:-225.199,0,-300.123	0/1:34:24,10:24:864:10:356:-22.1462,0,-67.8475	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/1:151:70,81:70:2497:81:2908:-216.499,0,-179.52	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:9:5,4:5:180:4:129:-9.21839,0,-13.8428	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5607	0/1:136:86,50:86:3079:50:1792:-120.622,0,-236.397	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:205:205,0:205:7296:0:0:0,-61.7111,-656.689	0/0:205:205,0:205:7311:0:0:0,-61.7111,-658.034	0/1:29:26,3:26:932:3:108:-1.3453,0,-75.469	0/1:69:33,36:33:1184:36:1292:-95.8127,0,-86.0972	0/1:160:86,73:86:3069:73:2597:-185.754,0,-228.214	0/0:130:130,0:130:4660:0:0:0,-39.1339,-419.561	0/0:38:38,0:38:1356:0:0:0,-11.4391,-122.34	0/0:48:48,0:48:1724:0:0:0,-14.4494,-155.445	0/1:74:36,38:36:1296:38:1353:-99.7922,0,-94.6677	0/1:11:6,5:6:216:5:180:-13.2407,0,-16.4792	0/0:94:94,0:94:3352:0:0:0,-28.2968,-301.895	0/0:69:68,1:68:2436:1:32:0,-17.5718,-216.296	0/1:120:50,70:50:1796:70:2487:-187.959,0,-125.799	0/0:141:141,0:141:5018:0:0:0,-42.4452,-451.766	0/0:97:97,0:97:3476:0:0:0,-29.1999,-313.051	0/1:68:44,24:44:1565:24:860:-57.2518,0,-120.67	0/1:9:3,6:3:108:6:216:-17.0812,0,-7.3659	0/0:80:79,1:79:2840:1:36:0,-20.4841,-252.239	0/1:119:66,53:66:2363:53:1899:-135.365,0,-177.105	0/0:277:277,0:277:9904:0:0:0,-83.3853,-891.298	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.34	0/1:78:45,33:45:1586:33:1180:-83.0277,0,-119.546	0/0:96:95,1:95:3397:1:36:0,-25.3006,-302.345	0/0:161:160,1:160:5733:1:36:0,-44.8676,-512.486	0/1:47:30,17:30:1067:17:608:-40.9036,0,-82.1928	0/0:98:98,0:98:3512:0:0:0,-29.5009,-316.29	0/1:84:39,45:39:1400:45:1616:-120.443,0,-101.013	0/1:51:20,31:20:720:31:1112:-85.0388,0,-49.7762	0/1:84:54,30:54:1923:30:1080:-72.2267,0,-148.06	0/1:86:35,51:35:1245:51:1832:-139.268,0,-86.4641	0/0:145:145,0:145:5181:0:0:0,-43.6493,-466.429	0/0:99:99,0:99:3552:0:0:0,-29.802,-319.888
chr12	24846340	.	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chr12	24960046	.	C	T	135360	PASS	AB=0.535341;ABP=45.5249;AC=142;AF=0.755319;AN=188;AO=6244;CIGAR=1X;DP=8077;DPB=8077;DPRA=0;EPP=12825;EPPR=3790.18;GTI=2;LEN=1;MEANALT=1.02128;MQM=59.2908;MQMR=59.2469;NS=94;NUMALT=1;ODDS=1.20305;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=222749;QR=65123;RO=1831;RPL=6158;RPP=12825;RPPR=3790.18;RPR=86;RUN=1;SAF=6244;SAP=13561.7;SAR=0;SRF=1831;SRP=3978.98;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:720:-65.1173,-6.0206,0	1/1:135:0,135:0:0:135:4817:-433.433,-40.6391,0	0/1:77:45,32:45:1601:32:1144:-79.7127,0,-120.902	0/1:194:88,106:88:3139:106:3779:-281.81,0,-224.28	0/1:30:10,20:10:360:20:720:-56.0979,0,-23.7134	0/1:39:13,26:13:468:26:936:-72.8088,0,-30.5415	1/1:101:0,101:0:0:101:3576:-322.006,-30.404,0	0/1:129:66,63:66:2339:63:2236:-162.466,0,-171.708	0/1:81:32,49:32:1144:49:1764:-134.495,0,-78.7878	1/1:56:1,55:1:36:55:1976:-174.057,-13.2909,0	0/1:57:32,25:32:1136:25:892:-63.441,0,-85.3902	0/1:74:38,36:38:1349:36:1288:-93.9311,0,-99.4069	0/1:61:24,37:24:860:37:1308:-99.6458,0,-59.3496	0/1:106:40,66:40:1432:66:2327:-177.687,0,-97.268	1/1:81:0,81:0:0:81:2860:-257.627,-24.3834,0	0/1:75:41,34:41:1468:34:1220:-87.5259,0,-109.832	1/1:95:1,94:1:36:94:3337:-296.676,-24.9996,0	0/1:66:28,38:28:993:38:1345:-101.341,0,-69.804	1/1:37:0,37:0:0:37:1332:-120.166,-11.1381,0	1/1:105:0,105:0:0:105:3750:-337.598,-31.6082,0	0/1:89:28,61:28:995:61:2183:-169.81,0,-63.0677	1/1:93:0,93:0:0:93:3310:-298.061,-27.9958,0	1/1:133:0,133:0:0:133:4760:-428.343,-40.037,0	0/1:96:33,63:33:1188:63:2243:-173.187,0,-78.0895	1/1:74:0,74:0:0:74:2647:-238.312,-22.2762,0	0/1:264:113,151:113:4009:151:5395:-406.122,0,-281.431	1/1:207:1,206:1:32:206:7380:-660.663,-59.1139,0	1/1:43:0,43:0:0:43:1528:-137.809,-12.9443,0	0/1:188:97,90:97:3440:90:3211:-232.543,0,-253.141	0/1:116:62,54:62:2212:54:1912:-137.428,0,-164.245	0/1:149:90,59:90:3200:59:2115:-145.679,0,-243.255	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:2:0,2:0:0:2:72:-6.83588,-0.60206,0	0/1:3:1,2:1:36:2:68:-5.55403,0,-2.69474	0/1:9:4,5:4:144:5:180:-13.8407,0,-10.6027	0/1:258:141,117:141:5008:117:4173:-298.048,0,-373.181	1/1:124:1,123:1:36:123:4400:-392.483,-33.7294,0	1/1:58:0,58:0:0:58:2069:-186.383,-17.4597,0	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:127:0,127:0:0:127:4499:-404.925,-38.2308,0	1/1:64:0,64:0:0:64:2284:-205.777,-19.2659,0	1/1:94:0,94:0:0:94:3352:-301.773,-28.2968,0	1/1:126:0,126:0:0:126:4495:-404.62,-37.9298,0	1/1:75:0,75:0:0:75:2651:-238.672,-22.5773,0	0/1:65:17,48:17:608:48:1708:-134.421,0,-35.4674	1/1:91:1,90:1:36:90:3215:-285.853,-23.7959,0	0/1:84:28,56:28:1004:56:1990:-154.056,0,-65.3603	1/1:108:0,108:0:0:108:3859:-347.448,-32.5112,0	0/1:129:55,74:55:1957:74:2648:-199.533,0,-137.551	1/1:126:0,126:0:0:126:4528:-407.685,-37.9298,0	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/1:67:36,31:36:1284:31:1108:-79.8488,0,-95.5097	0/1:36:24,12:24:856:12:432:-28.3837,0,-66.5225	0/1:9:4,5:4:144:5:180:-13.7532,0,-10.6027	0/1:78:31,47:31:1080:47:1692:-129.078,0,-73.8289	1/1:60:0,60:0:0:60:2130:-191.91,-18.0618,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	1/1:76:0,76:0:0:76:2719:-244.653,-22.8783,0	0/1:91:42,49:42:1493:49:1751:-130.435,0,-107.269	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:134:0,134:0:0:134:4808:-432.866,-40.338,0	1/1:165:1,164:1:36:164:5864:-524.2,-46.0717,0	0/1:62:8,54:8:288:54:1928:-155.069,0,-7.60355	0/1:57:26,31:26:932:31:1108:-82.8723,0,-67.0117	0/1:190:82,108:82:2905:108:3842:-288.778,0,-204.389	1/1:99:2,97:2:72:97:3457:-304.396,-22.9652,0	1/1:45:0,44:0:0:44:1572:-141.362,-13.2453,0	1/1:59:0,59:0:0:59:2120:-190.955,-17.7608,0	0/1:118:58,60:58:2054:60:2148:-158.031,0,-149.591	0/1:10:4,6:4:144:6:216:-16.7514,0,-10.3033	1/1:59:0,59:0:0:59:2108:-189.851,-17.7608,0	1/1:46:0,46:0:0:46:1640:-147.864,-13.8474,0	0/1:158:67,91:67:2396:91:3234:-242.937,0,-168.158	1/1:109:0,109:0:0:109:3904:-351.477,-32.8123,0	1/1:79:1,78:1:36:78:2786:-247.006,-20.1835,0	0/1:94:58,36:58:2055:36:1271:-86.369,0,-156.721	0/1:11:5,6:5:165:6:212:-16.1113,0,-11.8575	1/1:80:1,79:1:36:79:2820:-250.385,-20.4841,0	0/1:55:28,27:28:1008:27:967:-70.63,0,-73.6899	1/1:188:0,188:0:0:188:6735:-606.122,-56.5936,0	1/1:116:0,116:0:0:116:4107:-369.747,-34.9195,0	0/1:81:40,41:40:1423:41:1472:-108.207,0,-103.926	1/1:151:0,151:0:0:151:5381:-484.354,-45.4555,0	1/1:179:1,178:1:36:178:6305:-563.899,-50.2861,0	0/1:46:27,19:27:968:19:684:-48.0353,0,-73.5802	1/1:95:0,95:0:0:95:3391:-305.313,-28.5979,0	0/1:74:32,42:32:1139:42:1506:-113.41,0,-80.444	0/1:45:25,20:25:870:20:720:-51.3629,0,-65.0657	0/1:95:39,56:39:1391:56:1950:-147.103,0,-96.7991	0/1:92:53,39:53:1866:39:1404:-98.9077,0,-140.491	1/1:98:0,98:0:0:98:3477:-313.059,-29.5009,0	1/1:112:0,112:0:0:112:3998:-359.89,-33.7154,0
chr12	24960068	.	A	G	88012.8	PASS	AB=0.47748;ABP=39.2958;AC=47;AF=0.25;AN=188;AO=3960;CIGAR=1X;DP=17042;DPB=17042;DPRA=1.17522;EPP=8602.04;EPPR=28405.9;GTI=0;LEN=1;MEANALT=1.01639;MQM=59.5879;MQMR=59.5746;NS=94;NUMALT=1;ODDS=2.01002;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140456;QR=465318;RO=13080;RPL=1813;RPP=64.1822;RPPR=32.5749;RPR=2147;RUN=1;SAF=1813;SAP=64.1822;SAR=2147;SRF=6329;SRP=32.5749;SRR=6751;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:97:97,0:97:3460:0:0:0,-29.1999,-311.598	0/0:190:190,0:190:6784:0:0:0,-57.1957,-610.306	0/1:288:163,125:163:5789:125:4407:-309.776,0,-433.934	0/1:451:236,215:236:8322:215:7682:-555.617,0,-612.7	0/1:90:63,27:63:2234:27:949:-58.6301,0,-174.229	0/1:58:32,26:32:1152:26:893:-63.0413,0,-86.5186	0/0:171:171,0:171:6096:0:0:0,-51.4761,-548.655	0/1:254:113,141:113:4024:141:5001:-373.394,0,-285.621	0/1:166:91,75:91:3252:75:2665:-190.026,0,-242.776	0/0:138:137,1:137:4892:1:36:0,-37.9753,-436.34	0/1:125:54,71:54:1919:71:2544:-191.582,0,-135.358	0/1:187:86,101:86:3054:101:3576:-265.622,0,-218.693	0/1:142:77,65:77:2746:65:2317:-166.032,0,-204.606	0/1:160:101,59:101:3590:59:2089:-140.113,0,-275.006	0/0:158:158,0:158:5684:0:0:0,-47.5627,-511.641	0/1:149:60,89:60:2144:89:3149:-238.775,0,-148.363	0/0:122:122,0:122:4336:0:0:0,-36.7257,-390.129	0/1:122:57,65:57:2013:65:2324:-172.569,0,-144.511	0/0:74:74,0:74:2625:0:0:0,-22.2762,-236.462	0/0:326:326,0:326:11588:0:0:0,-98.1358,-1042.62	0/1:254:150,104:150:5330:104:3706:-257.275,0,-403.171	0/0:193:193,0:193:6875:0:0:0,-58.0988,-618.758	0/0:207:207,0:207:7385:0:0:0,-62.3132,-664.255	0/1:204:130,74:130:4625:74:2624:-174.946,0,-354.707	0/0:187:186,1:186:6623:1:36:0,-52.6943,-592.416	0/1:494:293,201:293:10474:201:7100:-490.28,0,-793.771	0/0:537:536,1:536:19063:1:36:0,-158.055,-1710.88	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.317	0/1:425:183,242:183:6505:242:8553:-641.801,0,-457.581	0/1:212:113,99:113:4002:99:3506:-251.151,0,-296.54	0/1:229:92,137:92:3291:137:4859:-368.371,0,-227.388	0/1:16:10,6:10:335:6:216:-14.9284,0,-25.6566	0/0:41:41,0:41:1455:0:0:0,-12.3422,-131.245	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.6634	0/1:18:5,13:5:176:13:464:-36.6786,0,-10.7655	0/1:32:27,5:27:960:5:176:-6.55067,0,-77.0795	0/1:454:200,254:200:7142:254:9070:-679.555,0,-506.151	0/0:230:229,0:229:8146:0:0:0,-68.9359,-732.802	0/0:126:126,0:126:4488:0:0:0,-37.9298,-403.904	0/1:7:4,3:4:144:3:99:-7.12937,0,-11.2064	0/0:254:254,0:254:9023:0:0:0,-76.4616,-811.412	0/0:90:90,0:90:3205:0:0:0,-27.0927,-288.653	0/0:261:261,0:261:9232:0:0:0,-78.5688,-830.695	0/0:177:177,0:177:6324:0:0:0,-53.2823,-568.959	0/0:124:124,0:124:4412:0:0:0,-37.3277,-396.878	0/1:165:111,54:111:3955:54:1932:-124.469,0,-306.455	0/0:272:271,1:271:9627:1:36:0,-78.2823,-862.528	0/1:192:107,85:107:3822:85:2980:-210.605,0,-286.305	0/0:182:182,0:182:6502:0:0:0,-54.7875,-585.235	0/1:318:198,120:198:7017:120:4264:-288.181,0,-535.479	0/0:248:248,0:248:8826:0:0:0,-74.6554,-794.321	0/1:16:8,8:8:284:8:284:-21.0869,0,-21.0869	0/1:223:127,96:127:4523:96:3417:-240.425,0,-340.087	0/1:89:41,48:41:1427:48:1698:-126.283,0,-101.93	0/1:23:13,10:13:459:10:356:-25.4559,0,-34.6316	0/1:259:146,112:146:5140:112:3925:-275.47,0,-384.859	0/0:124:124,0:124:4364:0:0:0,-37.3277,-392.88	0/1:37:25,12:25:881:12:423:-27.2668,0,-68.4678	0/0:31:31,0:31:1108:0:0:0,-9.33193,-100.031	0/0:212:212,0:212:7514:0:0:0,-63.8184,-675.791	0/1:185:101,84:101:3602:84:3001:-214.629,0,-268.645	0/0:20:20,0:20:711:0:0:0,-6.0206,-64.3156	0/0:266:266,0:266:9450:0:0:0,-80.074,-850.077	0/0:367:364,3:364:12905:3:108:0,-100.403,-1151.02	0/0:118:110,8:110:3913:8:288:0,-9.25413,-326.032	0/1:167:91,76:91:3215:76:2692:-192.224,0,-239.263	0/1:327:178,149:178:6377:149:5269:-375.781,0,-475.53	0/0:294:290,4:290:10271:4:144:0,-75.1892,-910.905	0/0:94:93,1:93:3313:1:36:0,-24.7483,-294.238	0/0:106:106,0:106:3772:0:0:0,-31.9092,-339.564	0/1:160:83,77:83:2946:77:2743:-198.929,0,-217.157	0/1:28:17,11:17:599:11:377:-25.8272,0,-45.7808	0/0:209:209,0:209:7421:0:0:0,-62.9153,-667.799	0/0:156:156,0:156:5521:0:0:0,-46.9607,-496.987	0/1:294:180,114:180:6402:114:4036:-274.751,0,-486.938	0/0:338:338,0:338:12017:0:0:0,-101.748,-1081.07	0/0:168:167,1:167:5971:1:36:0,-46.9752,-533.143	0/1:241:72,169:72:2567:169:5995:-466.919,0,-158.717	0/1:23:15,8:15:516:8:288:-19.2549,0,-39.8364	0/0:215:214,1:214:7613:1:36:0,-61.1232,-681.508	0/1:181:90,91:90:3208:91:3200:-232.95,0,-234.267	0/0:318:316,2:316:11299:2:72:0,-88.8908,-1009.52	0/0:165:165,0:165:5876:0:0:0,-49.6699,-528.883	0/1:138:66,72:66:2350:72:2552:-188.33,0,-170.086	0/0:187:187,0:187:6703:0:0:0,-56.2926,-603.278	0/0:308:307,1:307:10970:1:36:0,-89.119,-982.585	0/1:64:31,33:31:1103:33:1188:-87.953,0,-80.3062	0/0:153:152,1:152:5408:1:36:0,-42.4593,-483.168	0/1:137:66,71:66:2355:71:2536:-187.152,0,-170.757	0/1:87:41,46:41:1468:46:1635:-121.225,0,-106.057	0/1:198:101,97:101:3599:97:3404:-246.908,0,-264.495	0/1:148:55,93:55:1967:93:3320:-253.886,0,-132.695	0/0:264:263,1:263:9379:1:36:0,-75.8736,-840.155	0/0:212:212,0:212:7492:0:0:0,-63.8184,-674.116
chr12	24960113	.	C	T	151276	PASS	AB=0.514801;ABP=11.5594;AC=142;AF=0.755319;AN=188;AO=7143;CIGAR=1X;DP=9332;DPB=9332;DPRA=0;EPP=15513.8;EPPR=4752.02;GTI=1;LEN=1;MEANALT=1.02128;MQM=59.75;MQMR=59.9451;NS=94;NUMALT=1;ODDS=1.39714;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=255676;QR=77840;RO=2187;RPL=7143;RPP=15513.8;RPPR=4752.02;RPR=0;RUN=1;SAF=0;SAP=15513.8;SAR=7143;SRF=0;SRP=4752.02;SRR=2187;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:82:0,82:0:0:82:2922:-262.838,-24.6845,0	1/1:61:0,61:0:0:61:2192:-197.281,-18.3628,0	0/1:219:82,137:82:2918:137:4897:-374.92,0,-196.926	0/1:256:126,130:126:4509:130:4638:-340.517,0,-328.913	0/1:60:16,44:16:576:44:1569:-123.437,0,-34.1132	0/1:19:14,5:14:489:5:180:-10.8316,0,-38.6193	1/1:69:0,69:0:0:69:2480:-223.447,-20.7711,0	0/1:137:83,54:83:2927:54:1917:-131.386,0,-222.413	0/1:87:42,45:42:1500:45:1605:-118.534,0,-109.105	1/1:86:0,86:0:0:86:3050:-274.707,-25.8886,0	0/1:70:39,31:39:1389:31:1116:-79.6796,0,-104.235	0/1:110:58,51:58:2065:51:1832:-131.987,0,-152.947	0/1:87:44,43:44:1569:43:1548:-113.328,0,-115.31	0/1:56:22,34:22:792:34:1216:-92.8889,0,-54.748	1/1:78:0,78:0:0:78:2793:-251.608,-23.4803,0	0/1:74:49,25:49:1764:25:881:-57.319,0,-136.768	1/1:27:0,27:0:0:27:964:-87.0768,-8.12781,0	0/1:56:35,21:35:1245:21:752:-51.1452,0,-95.495	1/1:41:0,41:0:0:41:1476:-133.102,-12.3422,0	1/1:232:0,232:0:0:232:8248:-742.1,-69.839,0	0/1:169:76,93:76:2721:93:3295:-245.671,0,-194.257	1/1:105:0,105:0:0:105:3761:-338.683,-31.6082,0	1/1:74:0,74:0:0:74:2659:-239.555,-22.2762,0	0/1:107:43,64:43:1529:64:2300:-175,0,-105.691	1/1:123:0,123:0:0:123:4397:-395.501,-37.0267,0	0/1:238:96,142:96:3448:142:5096:-387.126,0,-238.887	1/1:346:1,345:1:36:345:12370:-1108.05,-100.558,0	1/1:22:0,22:0:0:22:792:-71.6057,-6.62266,0	0/1:243:149,94:149:5227:94:3369:-230.274,0,-397.294	0/1:102:39,63:39:1370:63:2226:-169.789,0,-92.8895	0/1:85:49,36:49:1749:36:1296:-91.3564,0,-132.105	0/1:16:7,9:7:237:9:324:-24.686,0,-16.8426	1/1:33:0,33:0:0:33:1188:-107.229,-9.93399,0	1/1:7:0,7:0:0:7:237:-21.6591,-2.10721,0	0/1:15:12,3:12:432:3:104:-5.18736,0,-34.7057	1/1:23:1,22:1:36:22:792:-68.0056,-3.32542,0	0/1:201:115,86:115:4102:86:3096:-218.359,0,-308.847	1/1:114:0,114:0:0:114:4072:-366.285,-34.3174,0	1/1:71:0,71:0:0:71:2552:-229.927,-21.3731,0	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:129:0,129:0:0:129:4640:-417.467,-38.8329,0	1/1:26:0,26:0:0:26:936:-84.5579,-7.82678,0	1/1:174:0,174:0:0:174:6237:-561.272,-52.3792,0	1/1:56:0,56:0:0:56:1977:-178.172,-16.8577,0	1/1:53:0,53:0:0:53:1892:-170.546,-15.9546,0	0/1:101:38,63:38:1353:63:2253:-172.541,0,-91.6644	1/1:190:0,190:0:0:190:6820:-613.577,-57.1957,0	0/1:114:57,57:57:1992:57:2040:-149.555,0,-145.229	1/1:75:0,75:0:0:75:2681:-241.532,-22.5773,0	0/1:198:69,129:69:2457:129:4594:-353.991,0,-161.779	1/1:127:0,127:0:0:127:4553:-409.927,-38.2308,0	0/1:8:4,4:4:144:4:140:-10.5363,0,-10.9054	0/1:159:61,98:61:2173:98:3505:-267.631,0,-147.963	0/1:57:24,33:24:856:33:1184:-89.7096,0,-60.174	0/1:14:5,9:5:180:9:324:-25.291,0,-12.3376	0/1:193:93,100:93:3272:100:3600:-266.106,0,-236.598	1/1:67:0,67:0:0:67:2389:-214.836,-20.169,0	0/1:33:12,21:12:432:21:752:-58.0723,0,-29.2863	1/1:19:0,19:0:0:19:684:-61.8903,-5.71957,0	1/1:141:0,141:0:0:141:5049:-454.492,-42.4452,0	0/1:95:42,53:42:1497:53:1908:-143.394,0,-106.425	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:137:0,137:0:0:137:4898:-440.513,-41.2411,0	1/1:212:3,209:3:108:209:7479:-662.907,-53.7432,0	1/1:59:0,59:0:0:59:2104:-189.63,-17.7608,0	0/1:107:48,59:48:1716:59:2113:-158.219,0,-122.515	0/1:142:69,73:69:2472:73:2605:-191.932,0,-179.983	1/1:207:2,205:2:72:205:7318:-651.801,-55.4765,0	1/1:48:0,48:0:0:48:1712:-153.988,-14.4494,0	1/1:49:0,49:0:0:49:1760:-158.678,-14.7505,0	0/1:43:21,22:21:752:22:792:-58.6614,0,-55.062	0/1:18:7,11:7:248:11:392:-30.2015,0,-17.241	1/1:155:0,155:0:0:155:5568:-500.989,-46.6597,0	1/1:111:0,111:0:0:111:3992:-359.465,-33.4143,0	0/1:148:51,97:51:1817:97:3473:-268.219,0,-119.257	1/1:240:0,240:0:0:240:8574:-771.637,-72.2472,0	1/1:92:0,92:0:0:92:3299:-297.118,-27.6948,0	0/1:159:119,40:119:4261:40:1421:-80.3217,0,-335.803	0/1:12:3,9:3:108:9:324:-25.8926,0,-6.46281	1/1:145:0,145:0:0:145:5208:-468.614,-43.6494,0	0/1:130:62,67:62:2198:67:2408:-177.556,0,-159.037	1/1:137:0,137:0:0:137:4912:-442.163,-41.2411,0	1/1:51:0,51:0:0:51:1828:-164.795,-15.3525,0	0/1:61:33,28:33:1184:28:1008:-72.6735,0,-88.5055	1/1:37:0,37:0:0:37:1312:-118.379,-11.1381,0	1/1:134:0,134:0:0:134:4813:-431.871,-40.338,0	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	1/1:62:1,61:1:36:61:2196:-194.208,-15.0656,0	0/1:66:38,28:38:1360:28:1004:-70.8079,0,-102.833	0/1:41:20,21:20:690:21:756:-56.025,0,-50.0746	0/1:110:60,50:60:2144:50:1796:-128.809,0,-160.114	0/1:54:37,17:37:1328:17:612:-39.1578,0,-103.531	1/1:184:1,183:1:36:183:6527:-583.841,-51.7912,0	1/1:111:0,111:0:0:111:3996:-359.827,-33.4143,0
chr12	24960120	.	GT	AA,GA	195780	PASS	AB=0.511322,0.486866;ABP=7.92758,9.627;AC=142,46;AF=0.755319,0.244681;AN=188;AO=6999,2164;CIGAR=2X,1M1X;DP=9179;DPB=9180;DPRA=0,1.1927;EPP=15201.1,4702.08;EPPR=0;GTI=1;LEN=2,1;MEANALT=1.75532,2.14035;MQM=59.7624,59.9205;MQMR=0;NS=94;NUMALT=2;ODDS=1.00771;PAIRED=0,0;PAIREDR=0;PAO=2,0;PQA=72,0;PQR=0;PRO=0;QA=247826,77483;QR=0;RO=0;RPL=6999,2164;RPP=15201.1,4702.08;RPPR=0;RPR=0,0;RUN=1,1;SAF=0,0;SAP=15201.1,4702.08;SAR=6999,2164;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:82:0,82,0:0:0:82,0:2911,0:-262.194,-24.6845,0,-262.194,-24.6845,-262.194	1/1:60:0,59,1:0:0:59,1:2101,36:-188.735,-17.7608,0,-185.798,-14.4635,-185.497	1/2:218:0,135,82:0:0:135,82:4780,2922:-627.539,-238.187,-197.548,-389.367,0,-364.683	1/2:251:0,125,126:0:0:125,126:4448,4497:-729.475,-366.968,-329.34,-362.863,0,-324.933	1/2:59:0,43,16:0:0:43,16:1544,572:-172.947,-46.9969,-34.0527,-126.308,0,-121.492	1/2:16:0,4,12:0:0:4,12:144,428:-46.996,-35.2464,-34.0423,-12.1086,0,-8.49621	1/1:67:0,67,0:0:0:67,0:2389,0:-215.261,-20.169,0,-215.261,-20.169,-215.261	1/2:135:0,53,82:0:0:53,82:1865,2902:-388.422,-236.643,-220.688,-152.132,0,-127.447	1/2:85:0,44,41:0:0:44,41:1554,1476:-247.32,-120.794,-107.549,-126.882,0,-114.54	1/1:83:0,82,1:0:0:82,1:2904,36:-261.216,-24.6845,0,-258.278,-21.3872,-257.977	1/2:70:0,31,39:0:0:31,39:1083,1400:-202.65,-114.559,-105.227,-88.4446,0,-76.7044	1/2:107:0,49,58:0:0:49,58:1760,2088:-314.302,-170.73,-155.98,-143.932,0,-126.472	1/2:82:0,39,43:0:0:39,43:1400,1548:-240.859,-126.668,-114.928,-114.55,0,-101.606	1/2:56:0,34,22:0:0:34,22:1211,777:-162.334,-63.6277,-53.3927,-99.0602,0,-92.4375	1/1:78:0,77,1:0:0:77,1:2760,32:-248.322,-23.1793,0,-245.744,-20.281,-245.443	1/2:73:0,24,49:0:0:24,49:850,1764:-213.525,-144.293,-137.069,-69.5878,0,-54.8373	1/1:28:0,28,0:0:0:28,0:991,0:-89.5029,-8.42884,0,-89.5029,-8.42884,-89.5029	1/2:57:0,21,36:0:0:21,36:756,1296:-167.789,-106.107,-99.7852,-62.0422,0,-51.2052	1/1:40:0,40,0:0:0:40,0:1413,0:-127.442,-12.0412,0,-127.442,-12.0412,-127.442	1/1:227:0,227,0:0:0:227,0:8030,0:-722.535,-68.3338,0,-722.535,-68.3338,-722.535	1/2:164:0,87,77:0:0:87,77:3075,2737:-472.924,-222.542,-196.352,-250.377,0,-227.197	1/1:103:0,103,0:0:0:103,0:3675,0:-330.949,-31.0061,0,-330.949,-31.0061,-330.949	1/1:72:0,71,0:0:0:71,0:2513,0:-226.11,-21.3731,0,-226.11,-21.3731,-226.11	1/2:109:0,66,43:0:0:66,43:2344,1540:-316.889,-125.949,-106.081,-191.297,0,-178.353	1/1:123:0,123,0:0:0:123,0:4364,0:-392.767,-37.0267,0,-392.767,-37.0267,-392.767	1/2:235:0,138,95:0:0:138,95:4884,3404:-675.482,-277.668,-236.126,-397.864,0,-369.266	1/1:343:0,342,1:0:0:342,1:12148,36:-1091.44,-102.952,0,-1088.5,-99.655,-1088.2	1/1:22:0,22,0:0:0:22,0:788,0:-71.245,-6.62266,0,-71.245,-6.62266,-71.245	1/2:233:0,90,143:0:0:90,143:3222,5111:-679.729,-416.98,-389.887,-263.106,0,-220.059	1/2:100:0,62,38:0:0:62,38:2178,1360:-288.298,-111.261,-92.5976,-177.391,0,-165.952	1/2:82:0,34,48:0:0:34,48:1196,1720:-237.99,-140.636,-130.401,-97.7078,0,-83.2584	1/2:15:0,8,7:0:0:8,7:280,252:-43.6937,-20.9217,-18.5135,-23.1271,0,-21.0199	1/1:34:0,33,0:0:0:33,0:1173,0:-105.556,-9.93399,0,-105.556,-9.93399,-105.556	1/1:7:0,7,0:0:0:7,0:241,0:-22.0247,-2.10721,0,-22.0247,-2.10721,-22.0247	1/2:15:0,3,12:0:0:3,12:106,432:-44.2403,-35.6088,-34.7057,-8.98601,0,-5.37365	1/1:23:0,22,1:0:0:22,1:786,36:-70.7029,-6.62266,0,-67.7654,-3.32542,-67.4644	1/2:196:0,82,114:0:0:82,114:2935,4077:-572.138,-332.797,-308.112,-239.699,0,-205.382	1/1:111:0,111,0:0:0:111,0:3897,0:-350.62,-33.4143,0,-350.62,-33.4143,-350.62	1/1:71:0,71,0:0:0:71,0:2517,0:-226.77,-21.3731,0,-226.77,-21.3731,-226.77	1/2:4:0,3,1:0:0:3,1:108,36:-12.1095,-3.29724,-2.39415,-9.17208,0,-8.87105	1/1:126:0,126,0:0:0:126,0:4415,0:-397.347,-37.9298,0,-397.347,-37.9298,-397.347	1/1:24:0,23,0:0:0:23,0:813,0:-73.1296,-6.92369,0,-73.1296,-6.92369,-73.1296	1/1:172:0,170,1:0:0:170,1:5960,36:-536.193,-51.1751,0,-533.312,-48.2416,-533.011	1/1:55:0,55,0:0:0:55,0:1923,0:-173.326,-16.5567,0,-173.326,-16.5567,-173.326	1/1:49:0,49,0:0:0:49,0:1743,0:-157.142,-14.7505,0,-157.142,-14.7505,-157.142	1/2:100:0,62,38:0:0:62,38:2193,1368:-290.507,-111.982,-93.3178,-178.883,0,-167.444	1/1:184:0,184,0:0:0:184,0:6502,0:-585.113,-55.3895,0,-585.113,-55.3895,-585.113	1/2:113:0,57,56:0:0:57,56:1996,2012:-326.891,-164.495,-147.337,-162.75,0,-145.893	1/1:75:0,75,0:0:0:75,0:2680,0:-241.445,-22.5773,0,-241.445,-22.5773,-241.445	1/2:195:0,126,69:0:0:126,69:4494,2480:-569.016,-202.682,-164.752,-366.692,0,-345.921	1/1:122:0,122,0:0:0:122,0:4332,0:-390.055,-36.7257,0,-390.055,-36.7257,-390.055	1/2:8:0,4,4:0:0:4,4:144,144:-23.8592,-12.1095,-10.9054,-12.1095,0,-10.9054	1/2:157:0,97,60:0:0:97,60:3451,2148:-456.601,-175.518,-146.318,-281.441,0,-263.379	1/2:55:0,31,23:0:0:31,23:1069,820:-153.642,-66.8107,-57.4788,-86.8228,0,-79.8991	1/2:14:0,9,5:0:0:9,5:320,180:-41.1217,-15.0469,-12.3376,-26.433,0,-24.9279	1/2:193:0,100,93:0:0:100,93:3553,3317:-560.27,-270.752,-240.649,-289.875,0,-261.879	1/1:65:0,65,0:0:0:65,0:2291,0:-205.593,-19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chr12	25034094	.	A	T	39729.7	PASS	AB=0.485205;ABP=12.3916;AC=45;AF=0.241935;AN=186;AO=2413;CIGAR=1X;DP=9995;DPB=9995;DPRA=1.29593;EPP=5087.59;EPPR=15611.9;GTI=0;LEN=1;MEANALT=1.04;MQM=44.7215;MQMR=59.5214;NS=93;NUMALT=1;ODDS=0.957701;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=86504;QR=271399;RO=7579;RPL=18;RPP=5087.59;RPPR=15620.4;RPR=2395;RUN=1;SAF=2413;SAP=5242.77;SAR=0;SRF=7578;SRP=16451.9;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1216:0:0:0,-10.235,-109.747	0/0:210:210,0:210:7525:0:0:0,-63.2163,-677.12	0/1:73:31,42:31:1112:42:1495:-109.51,0,-78.2801	0/1:248:118,130:118:4236:130:4645:-332.12,0,-306.553	0/1:71:44,27:44:1572:27:972:-65.238,0,-120.398	0/1:66:33,33:33:1169:33:1179:-83.6896,0,-85.6473	0/0:133:133,0:133:4749:0:0:0,-40.037,-427.348	0/1:120:73,47:73:2616:47:1684:-113.529,0,-199.564	0/1:82:45,37:45:1616:37:1332:-93.8451,0,-120.608	0/0:137:137,0:137:4913:0:0:0,-41.2411,-442.155	0/1:83:42,41:42:1493:41:1467:-104.982,0,-109.607	0/1:100:59,41:59:2116:41:1467:-100.32,0,-160.497	0/1:86:49,37:49:1760:37:1332:-92.6992,0,-132.795	0/1:120:54,66:54:1944:66:2376:-174.44,0,-139.023	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.611	0/1:55:27,28:27:972:28:1004:-71.7197,0,-71.2413	0/0:108:107,0:107:3848:0:0:0,-32.2102,-345.979	0/1:60:32,28:32:1152:28:1008:-71.7156,0,-85.9283	0/0:28:28,0:28:1008:0:0:0,-8.42884,-90.9914	0/0:375:372,3:372:13341:3:108:0,-102.95,-1189.72	0/1:149:67,82:67:2400:82:2944:-216.715,0,-171.269	0/0:102:102,0:102:3634:0:0:0,-30.7051,-327.173	0/0:71:71,0:71:2518:0:0:0,-21.3731,-226.744	0/1:97:48,49:48:1716:49:1764:-127.689,0,-125.4	0/0:41:41,0:41:1464:0:0:0,-12.3422,-131.903	0/1:460:302,158:302:10779:158:5676:-363.53,0,-831.345	0/0:179:179,0:179:6416:0:0:0,-53.8844,-577.19	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7956	0/1:218:102,116:102:3630:116:4168:-304.055,0,-261.234	0/1:220:106,114:106:3785:114:4075:-294.025,0,-274.528	0/1:159:89,70:89:3196:70:2496:-172.402,0,-239.98	0/1:7:2,5:2:72:5:180:-14.216,0,-4.72951	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/1:4:3,1:3:108:1:36:-2.3444,0,-8.87105	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:178:98,80:98:3520:80:2859:-198.78,0,-262.98	0/0:234:233,1:233:8306:1:36:0,-66.8925,-743.543	0/0:64:64,0:64:2304:0:0:0,-19.2659,-207.576	.:.:.:.:.:.:.:.	0/0:167:167,0:167:5984:0:0:0,-50.272,-538.628	0/0:28:28,0:28:1008:0:0:0,-8.42884,-91.0364	0/0:97:97,0:97:3480:0:0:0,-29.1999,-313.32	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.121	0/0:60:60,0:60:2156:0:0:0,-18.0618,-194.127	0/1:94:42,52:42:1500:52:1863:-136.775,0,-106.953	0/0:91:91,0:91:3261:0:0:0,-27.3937,-293.663	0/1:174:91,83:91:3252:83:2980:-211.322,0,-240.285	0/0:115:115,0:115:4120:0:0:0,-34.6184,-370.877	0/1:205:110,95:110:3928:95:3412:-240.506,0,-291.805	0/0:176:176,0:176:6281:0:0:0,-52.9813,-565.185	0/1:15:10,5:10:360:5:180:-11.8077,0,-28.2289	0/1:145:61,84:61:2173:84:3007:-223.562,0,-152.185	0/1:78:38,40:38:1356:40:1425:-103.101,0,-98.7703	0/1:24:10,13:10:352:13:464:-34.2611,0,-24.6972	0/1:138:70,68:70:2496:68:2436:-173.687,0,-182.812	0/0:42:42,0:42:1493:0:0:0,-12.6433,-134.573	0/1:12:9,3:9:305:3:108:-6.33291,0,-24.1195	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/0:115:115,0:115:4113:0:0:0,-34.6184,-370.334	0/1:110:57,53:57:2029:53:1900:-135.142,0,-149.749	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/0:185:185,0:185:6636:0:0:0,-55.6905,-596.694	0/0:171:170,1:170:6108:1:36:0,-47.9276,-546.083	0/0:140:130,10:130:4644:10:360:0,-10.4403,-386.277	0/1:59:35,24:35:1260:24:864:-59.0164,0,-95.9447	0/1:148:63,85:63:2249:85:3060:-225.976,0,-157.989	0/0:154:149,4:149:5306:4:140:0,-33.6138,-464.716	0/0:33:33,0:33:1188:0:0:0,-9.93399,-107.139	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.677	0/1:95:44,51:44:1580:51:1832:-134.3,0,-113.801	0/1:27:11,16:11:396:16:576:-42.9724,0,-27.8097	0/0:128:128,0:128:4588:0:0:0,-38.5318,-412.995	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.073	0/1:245:133,112:133:4757:112:3999:-280.379,0,-354.225	0/0:232:232,0:232:8336:0:0:0,-69.839,-749.737	0/0:144:144,0:144:5164:0:0:0,-43.3483,-464.674	0/1:132:73,59:73:2605:59:2116:-148.071,0,-194.871	0/1:15:6,9:6:216:9:324:-23.994,0,-15.2751	0/0:130:130,0:130:4668:0:0:0,-39.1339,-420.235	0/1:117:62,55:62:2228:55:1967:-139.679,0,-165.563	0/0:144:144,0:144:5153:0:0:0,-43.3483,-463.712	0/0:120:120,0:120:4316:0:0:0,-36.1236,-388.345	0/1:84:34,50:34:1220:50:1800:-132.943,0,-84.8203	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.576	0/0:149:149,0:149:5352:0:0:0,-44.8535,-480.959	0/1:39:15,24:15:540:24:864:-64.3677,0,-37.1964	0/0:76:76,0:76:2720:0:0:0,-22.8783,-244.994	0/1:68:34,34:34:1212:34:1224:-87.3755,0,-88.7629	0/1:52:27,25:27:968:25:892:-63.3437,0,-71.7391	0/1:131:64,67:64:2304:67:2404:-173.583,0,-168.006	0/1:71:16,55:16:572:55:1968:-152.917,0,-30.4321	0/0:48:48,0:48:1728:0:0:0,-14.4494,-155.603	0/0:92:92,0:92:3308:0:0:0,-27.6948,-297.668
chr12	25139774	.	C	T	55570.5	PASS	AB=0.423013;ABP=127.388;AC=133;AF=0.722826;AN=184;AO=2726;CIGAR=1X;DP=4130;DPB=4130;DPRA=30.5704;EPP=5861.8;EPPR=3038.73;GTI=4;LEN=1;MEANALT=1.02222;MQM=59.9956;MQMR=59.995;NS=92;NUMALT=1;ODDS=1.84554;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=97582;QR=49954;RO=1402;RPL=8;RPP=5853.16;RPPR=3038.73;RPR=2718;RUN=1;SAF=1;SAP=5913.76;SAR=2725;SRF=0;SRP=3047.41;SRR=1402;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:1,20:1:36:20:720:-61.5305,-2.72336,0	1/1:40:0,40:0:0:40:1433:-129.267,-12.0412,0	0/1:116:86,30:86:3064:30:1061:-60.8799,0,-241.068	0/1:111:64,47:64:2285:47:1673:-117.441,0,-172.496	0/1:34:20,14:20:705:14:504:-35.4631,0,-53.5378	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	1/1:38:1,37:1:36:37:1313:-114.871,-7.84087,0	0/1:102:69,33:69:2449:33:1188:-76.5235,0,-189.959	0/1:38:10,28:10:360:28:1004:-79.2367,0,-21.3052	1/1:29:0,29:0:0:29:1034:-93.3735,-8.72987,0	0/1:32:19,13:19:680:13:464:-32.4645,0,-51.8962	0/1:56:24,32:24:852:32:1144:-86.4118,0,-60.1427	0/1:43:21,22:21:748:22:788:-58.3005,0,-54.701	0/1:32:17,15:17:595:15:527:-38.1272,0,-44.2437	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:35:18,17:18:636:17:612:-44.8774,0,-47.032	1/1:31:0,31:0:0:31:1112:-100.391,-9.33193,0	0/1:29:14,15:14:504:15:540:-40.2067,0,-36.9682	1/1:30:0,30:0:0:30:1071:-96.7024,-9.0309,0	1/1:62:0,62:0:0:62:2202:-198.443,-18.6639,0	0/1:71:53,18:53:1869:18:648:-37.2788,0,-147.114	1/1:37:0,37:0:0:37:1332:-120.182,-11.1381,0	1/1:18:0,18:0:0:18:636:-57.568,-5.41854,0	0/1:28:14,14:14:504:14:504:-37.2693,0,-37.2693	1/1:24:0,24:0:0:24:853:-77.089,-7.22472,0	0/1:140:81,57:81:2886:57:2048:-142.69,0,-218.074	1/1:100:0,100:0:0:100:3577:-322.136,-30.103,0	1/1:19:0,19:0:0:19:680:-61.5292,-5.71957,0	0/1:119:64,55:64:2291:55:1980:-142.652,0,-170.628	0/1:69:44,25:44:1568:25:900:-60.5499,0,-120.641	0/1:37:17,20:17:608:20:701:-52.2736,0,-43.9139	.:.:.:.:.:.:.:.	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	.:.:.:.:.:.:.:.	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:126:65,61:65:2311:61:2188:-159.256,0,-170.315	1/1:47:0,47:0:0:47:1688:-152.207,-14.1484,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:50:0,50:0:0:50:1781:-160.571,-15.0515,0	1/1:22:0,22:0:0:22:780:-70.5225,-6.62266,0	1/1:55:0,55:0:0:55:1980:-178.474,-16.5567,0	1/1:26:0,26:0:0:26:932:-84.1989,-7.82678,0	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	0/1:51:36,15:36:1284:15:528:-32.4983,0,-100.511	1/1:65:1,64:1:36:64:2294:-203.123,-15.9687,0	0/1:79:51,28:51:1807:28:1008:-67.255,0,-139.13	1/1:36:0,36:0:0:36:1288:-116.224,-10.8371,0	0/1:64:45,19:45:1611:19:684:-42.6244,0,-126.013	1/1:57:0,57:0:0:57:2040:-183.872,-17.1587,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:122:78,44:78:2789:44:1580:-105.766,0,-214.523	0/1:34:22,12:22:792:12:432:-28.9862,0,-61.3707	1/1:5:0,5:0:0:5:176:-16.185,-1.50515,0	0/1:82:51,31:51:1820:31:1112:-75.7069,0,-139.397	1/1:14:0,14:0:0:14:500:-45.3362,-4.21442,0	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	1/1:44:0,44:0:0:44:1574:-141.951,-13.2453,0	0/1:82:37,45:37:1332:45:1612:-120.686,0,-95.4979	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:46:0,46:0:0:46:1652:-148.968,-13.8474,0	1/1:47:0,47:0:0:47:1677:-151.215,-14.1484,0	0/1:31:3,28:3:108:28:1003:-81.2539,0,-0.74324	0/1:43:33,10:33:1176:10:360:-19.8,0,-93.2035	0/1:75:51,24:51:1817:24:857:-54.8736,0,-141.232	1/1:70:2,68:2:72:68:2415:-210.768,-14.2354,0	0/1:23:13,10:13:452:10:360:-25.8206,0,-34.0874	1/1:33:0,33:0:0:33:1184:-106.868,-9.93399,0	0/1:27:14,13:14:491:13:468:-34.3318,0,-36.3933	0/1:9:6,3:6:216:3:108:-7.3659,0,-17.0812	1/1:66:0,66:0:0:66:2356:-212.299,-19.868,0	1/1:34:0,34:0:0:34:1220:-110.107,-10.235,0	0/1:84:47,37:47:1661:37:1320:-93.8136,0,-124.489	1/1:57:0,57:0:0:57:2046:-184.411,-17.1587,0	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:51:29,22:29:1040:22:792:-56.2531,0,-78.5618	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	1/1:42:2,40:2:68:40:1432:-122.72,-6.18555,0	0/1:55:37,18:37:1323:18:644:-41.7339,0,-102.815	1/1:43:0,43:0:0:43:1542:-139.073,-12.9443,0	1/1:43:0,43:0:0:43:1540:-138.893,-12.9443,0	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3053	1/1:26:0,26:0:0:26:936:-84.5595,-7.82678,0	1/1:69:0,69:0:0:69:2471:-222.643,-20.7711,0	0/1:18:7,11:7:252:11:396:-30.5642,0,-17.6104	1/1:52:0,52:0:0:52:1864:-168.039,-15.6536,0	0/1:48:18,30:18:640:30:1072:-82.343,0,-43.4799	0/1:33:16,17:16:572:17:608:-45.118,0,-41.8794	0/1:76:43,33:43:1532:33:1181:-83.7194,0,-115.295	0/1:34:21,13:21:752:13:468:-32.2246,0,-57.7712	1/1:32:0,32:0:0:32:1148:-103.63,-9.63296,0	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0
chr12	25139783	.	A	G	25053.3	PASS	AB=0.594931;ABP=191.423;AC=49;AF=0.266304;AN=184;AO=1443;CIGAR=1X;DP=4152;DPB=4152;DPRA=1.31268;EPP=3127.77;EPPR=5824.88;GTI=3;LEN=1;MEANALT=1;MQM=59.9951;MQMR=59.9978;NS=92;NUMALT=1;ODDS=0.233331;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51452;QR=97070;RO=2709;RPL=1;RPP=3127.77;RPPR=5824.88;RPR=1442;RUN=1;SAF=0;SAP=3136.44;SAR=1443;SRF=0;SRP=5885.53;SRR=2709;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:21:20,1:20:720:1:36:0,-2.72335,-61.5305	0/0:38:38,0:38:1360:0:0:0,-11.4391,-122.701	0/1:116:28,88:28:1008:88:3116:-245.747,0,-56.1169	0/1:112:49,63:49:1736:63:2246:-168.687,0,-122.806	0/1:35:14,21:14:504:21:752:-57.4702,0,-35.162	0/1:10:3,7:3:108:7:248:-19.6539,0,-7.06487	0/0:39:39,0:39:1404:0:0:0,-11.7402,-126.659	0/1:104:33,71:33:1184:71:2544:-197.904,0,-75.5612	0/1:39:28,11:28:1004:11:392:-23.8799,0,-78.9357	0/0:29:29,0:29:1025:0:0:0,-8.72987,-92.5607	0/1:35:14,21:14:491:21:735:-55.9339,0,-33.9851	0/1:57:31,26:31:1088:26:928:-66.6795,0,-81.0678	0/1:44:21,23:21:747:23:822:-61.0574,0,-54.309	0/1:31:14,17:14:504:17:608:-45.7201,0,-36.3662	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:34:17,17:17:612:17:589:-43.0983,0,-45.1784	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/1:29:14,15:14:504:15:532:-39.4832,0,-36.9682	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/1:74:18,56:18:644:56:1986:-156.737,0,-36.0144	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:28:15,13:15:527:13:460:-33.3065,0,-39.3313	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.3164	0/1:143:56,87:56:2008:87:3124:-238.338,0,-137.946	0/0:100:100,0:100:3576:0:0:0,-30.103,-322.048	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/1:121:53,68:53:1904:68:2414:-181.09,0,-135.213	0/1:69:25,44:25:891:44:1584:-122.08,0,-59.7377	0/1:38:20,18:20:720:18:644:-46.8515,0,-53.6896	.:.:.:.:.:.:.:.	0/1:9:6,3:6:216:3:104:-6.99354,0,-17.0812	.:.:.:.:.:.:.:.	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:128:62,66:62:2224:66:2342:-172.504,0,-161.892	0/0:49:49,0:49:1764:0:0:0,-14.7505,-159.044	0/0:42:42,0:42:1503:0:0:0,-12.6433,-135.564	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/0:48:48,0:48:1720:0:0:0,-14.4494,-155.086	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0063	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:27:27,0:27:972:0:0:0,-8.12781,-87.7979	0/0:32:32,0:32:1133:0:0:0,-9.63296,-102.277	0/1:54:15,39:15:540:39:1373:-107.611,0,-32.6809	0/0:64:64,0:64:2288:0:0:0,-19.2659,-206.182	0/1:80:28,52:28:1000:52:1872:-144.677,0,-66.233	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:63:19,44:19:680:44:1572:-122.807,0,-42.5643	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:123:44,79:44:1576:79:2824:-217.373,0,-105.105	0/1:33:12,21:12:432:21:752:-58.0723,0,-29.2872	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:83:31,52:31:1108:52:1868:-143.414,0,-75.0455	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:43:43,0:43:1544:0:0:0,-12.9443,-139.253	0/1:82:45,37:45:1620:37:1328:-95.1378,0,-121.406	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:32:29,3:29:1036:3:93:0,-0.95623,-84.8772	0/1:45:10,35:10:352:35:1256:-99.7989,0,-18.4718	0/1:75:22,53:22:792:53:1895:-148.25,0,-49.0284	0/0:70:68,2:68:2432:2:72:0,-14.2354,-212.299	0/1:25:11,14:11:381:14:500:-37.8104,0,-27.0949	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:28:13,15:13:468:15:540:-40.5077,0,-34.0308	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:33:33,0:33:1184:0:0:0,-9.93399,-106.868	0/1:81:32,49:32:1152:49:1739:-132.41,0,-79.6067	0/0:58:58,0:58:2084:0:0:0,-17.4597,-187.83	0/0:32:32,0:32:1148:0:0:0,-9.63296,-103.63	0/1:51:22,29:22:792:29:1031:-77.7501,0,-56.2531	0/1:9:7,2:7:248:2:72:-4.12745,0,-19.9549	0/0:42:40,2:40:1440:2:63:0,-6.6601,-123.915	0/1:56:18,38:18:644:38:1360:-105.843,0,-41.4329	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852	0/0:45:45,0:45:1616:0:0:0,-13.5463,-145.73	0/1:31:16,15:16:576:15:536:-39.2429,0,-42.8431	0/0:27:27,0:27:968:0:0:0,-8.12781,-87.4374	0/0:67:67,0:67:2400:0:0:0,-20.169,-216.257	0/1:18:11,7:11:396:7:248:-17.2457,0,-30.5642	0/0:51:51,0:51:1823:0:0:0,-15.3525,-164.35	0/1:47:28,19:28:1008:19:676:-47.0196,0,-76.8879	0/1:32:16,16:16:576:16:568:-41.8189,0,-42.542	0/1:77:33,44:33:1188:44:1572:-118.592,0,-84.0493	0/1:36:13,23:13:449:23:824:-63.6462,0,-29.9004	0/0:31:31,0:31:1112:0:0:0,-9.33193,-100.391	0/0:44:44,0:44:1580:0:0:0,-13.2453,-142.492
chr12	25182000	.	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chr12	25203027	.	GTTTC	CTTTC,CTTTT	200022	PASS	AB=0.504185,0.493162;ABP=3.7554,5.00004;AC=141,47;AF=0.75,0.25;AN=188;AO=6938,2423;CIGAR=1X4M,1X3M1X;DP=9384;DPB=9384.4;DPRA=0,1.16354;EPP=15068.7,5264.49;EPPR=5.18177;GTI=1;LEN=1,5;MEANALT=1.78723,2.26923;MQM=59.6061,53.837;MQMR=56;NS=94;NUMALT=2;ODDS=0.840856;PAIRED=0,0;PAIREDR=0;PAO=1,1;PQA=36,36;PQR=0;PRO=0;QA=247612,86117;QR=27;RO=1;RPL=6938,2423;RPP=15068.7,5264.49;RPPR=5.18177;RPR=0,0;RUN=1,1;SAF=0,0;SAP=15068.7,5264.49;SAR=6938,2423;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:58:0,58,0:0:0:58,0:2054,0:-184.89,-17.4597,0,-184.89,-17.4597,-184.89	1/1:88:0,88,0:0:0:88,0:3156,0:-284.216,-26.4906,0,-284.216,-26.4906,-284.216	1/2:191:0,91,100:0:0:91,100:3272,3530:-553.471,-286.537,-259.144,-267.289,0,-237.186	1/2:296:0,144,151:0:0:144,151:5124,5356:-851.316,-434.136,-390.788,-417.214,0,-371.758	1/2:51:0,26,25:0:0:26,25:930,896:-148.733,-73.1699,-65.3431,-75.92,0,-68.3943	1/2:13:0,6,7:0:0:6,7:216,252:-38.4806,-20.8639,-19.0577,-17.976,0,-15.8688	1/1:79:0,79,0:0:0:79,0:2829,0:-254.74,-23.7814,0,-254.74,-23.7814,-254.74	1/2:155:0,84,71:0:0:84,71:2990,2505:-447.058,-203.445,-178.158,-243.966,0,-222.593	1/2:91:0,36,55:0:0:36,55:1291,1962:-264.537,-159.248,-148.411,-105.646,0,-89.0891	1/1:80:0,79,0:0:0:79,0:2829,0:-254.463,-23.7814,0,-254.463,-23.7814,-254.463	1/2:57:0,34,22:0:0:34,22:1224,780:-163.099,-63.223,-52.9879,-99.8815,0,-93.2588	1/2:112:0,55,56:0:0:55,56:1961,2012:-323.084,-163.242,-146.685,-159.866,0,-143.008	1/2:73:0,38,34:0:0:38,34:1364,1203:-208.805,-97.5882,-86.1491,-111.213,0,-100.978	1/2:48:0,21,27:0:0:21,27:752,963:-139.96,-78.6378,-72.3161,-61.6791,0,-53.5513	1/1:90:0,90,0:0:0:90,0:3217,0:-289.739,-27.0927,0,-289.739,-27.0927,-289.739	1/2:76:0,43,32:0:0:43,32:1544,1141:-218.774,-92.8227,-79.8784,-125.949,0,-116.317	1/1:40:0,40,0:0:0:40,0:1421,0:-128.183,-12.0412,0,-128.183,-12.0412,-128.183	1/2:48:0,24,24:0:0:24,24:849,857:-138.669,-69.528,-62.3033,-69.4949,0,-62.2702	1/1:42:0,42,0:0:0:42,0:1508,0:-135.988,-12.6433,0,-135.988,-12.6433,-135.988	1/1:235:0,235,0:0:0:235,0:8391,0:-755.081,-70.7421,0,-755.081,-70.7421,-755.081	1/2:187:0,82,105:0:0:82,105:2944,3746:-544.494,-304.356,-279.671,-240.495,0,-208.887	1/1:118:0,118,0:0:0:118,0:4194,0:-377.621,-35.5215,0,-377.621,-35.5215,-377.621	1/1:112:0,112,0:0:0:112,0:4000,0:-360.178,-33.7154,0,-360.178,-33.7154,-360.178	1/2:86:0,44,42:0:0:44,42:1569,1503:-250.629,-122.736,-109.49,-128.25,0,-115.606	1/1:76:0,76,0:0:0:76,0:2709,0:-244.03,-22.8783,0,-244.03,-22.8783,-244.03	1/2:263:0,165,96:0:0:165,96:5908,3431:-760.981,-279.188,-229.518,-481.864,0,-452.965	1/1:241:0,240,0:0:0:240,0:8542,0:-768.176,-72.2472,0,-768.176,-72.2472,-768.176	1/1:21:0,21,0:0:0:21,0:752,0:-68.0063,-6.32163,0,-68.0063,-6.32163,-68.0063	1/2:407:0,208,198:0:0:208,198:7401,7020:-1173.32,-570.207,-507.593,-603.184,0,-543.58	1/2:140:0,78,62:0:0:78,62:2755,2204:-403,-178.802,-155.321,-224.552,0,-205.888	1/2:128:0,45,83:0:0:45,83:1597,2950:-370.04,-239.925,-226.379,-130.469,0,-105.484	1/2:8:0,7,1:0:0:7,1:248,36:-23.4905,-3.29214,-1.18493,-20.557,0,-20.256	1/1:16:0,16,0:0:0:16,0:576,0:-52.1704,-4.81648,0,-52.1704,-4.81648,-52.1704	1/1:7:0,7,0:0:0:7,0:248,0:-22.6626,-2.10721,0,-22.6626,-2.10721,-22.6626	1/2:4:0,3,1:0:0:3,1:108,36:-12.0954,-3.28202,-2.37893,-9.17208,0,-8.87105	1/2:5:0,2,3:0:0:2,3:72,108:-15.004,-9.13699,-8.53493,-6.22607,0,-5.32298	1/2:187:0,105,82:0:0:105,82:3757,2930:-545.387,-239.086,-207.478,-306.659,0,-281.974	1/1:137:0,137,0:0:0:137,0:4898,0:-440.935,-41.2411,0,-440.935,-41.2411,-440.935	1/1:40:0,40,0:0:0:40,0:1436,0:-129.528,-12.0412,0,-129.528,-12.0412,-129.528	1/1:5:0,4,0:0:0:4,0:144,0:-12.9542,-1.20412,0,-12.9542,-1.20412,-12.9542	1/1:133:0,133,0:0:0:133,0:4749,0:-427.432,-40.037,0,-427.432,-40.037,-427.432	1/1:17:0,17,0:0:0:17,0:612,0:-55.4134,-5.11751,0,-55.4134,-5.11751,-55.4134	1/1:218:0,218,0:0:0:218,0:7749,0:-696.809,-65.6245,0,-696.809,-65.6245,-696.809	1/1:72:0,72,0:0:0:72,0:2577,0:-232.02,-21.6742,0,-232.02,-21.6742,-232.02	1/1:64:0,64,0:0:0:64,0:2281,0:-205.501,-19.2659,0,-205.501,-19.2659,-205.501	1/2:107:0,59,48:0:0:59,48:2105,1716:-311.495,-140.169,-122.409,-171.683,0,-157.233	1/1:125:0,125,0:0:0:125,0:4463,0:-401.631,-37.6288,0,-401.631,-37.6288,-401.631	1/2:215:0,109,105:0:0:109,105:3894,3731:-620.796,-303.338,-270.526,-317.463,0,-285.855	1/1:78:0,78,0:0:0:78,0:2788,0:-251.156,-23.4803,0,-251.156,-23.4803,-251.156	1/2:136:0,85,50:0:0:85,50:3044,1781:-392.776,-144.536,-118.949,-248.236,0,-233.184	1/1:122:0,122,0:0:0:122,0:4342,0:-390.949,-36.7257,0,-390.949,-36.7257,-390.949	1/2:6:0,5,1:0:0:5,1:180,35:-17.8911,-3.19553,-1.69038,-15.0469,0,-14.7459	1/2:153:0,54,99:0:0:54,99:1937,3492:-440.617,-282.677,-266.422,-158.296,0,-128.494	1/2:79:0,22,57:0:0:22,57:792,2017:-229.099,-164.474,-157.852,-64.983,0,-47.8243	1/2:10:0,9,1:0:0:9,1:324,36:-29.7258,-3.2882,-0.578928,-26.7966,0,-26.4956	1/2:205:0,100,105:0:0:100,105:3561,3712:-591.422,-301.216,-271.113,-290.561,0,-258.953	1/1:55:0,54,0:0:0:54,0:1929,0:-173.523,-16.2556,0,-173.523,-16.2556,-173.523	1/2:14:0,11,3:0:0:11,3:396,105:-41.1524,-8.83221,-5.52088,-32.6705,0,-31.7674	1/1:20:0,20,0:0:0:20,0:690,0:-62.4168,-6.0206,0,-62.4168,-6.0206,-62.4168	1/1:101:0,101,0:0:0:101,0:3605,0:-324.64,-30.404,0,-324.64,-30.404,-324.64	1/2:75:0,42,33:0:0:42,33:1508,1172:-218.534,-95.5257,-82.8824,-123.364,0,-113.43	1/1:15:1,14,0:1:27:14,0:485,0:-41.2775,-1.816,0,-41.5786,-4.21442,-43.7019	1/1:221:0,221,0:0:0:221,0:7910,0:-711.78,-66.5276,0,-711.78,-66.5276,-711.78	1/1:166:0,165,1:0:0:165,1:5868,36:-527.713,-49.67,0,-524.778,-46.3753,-524.477	1/2:69:0,62,7:0:0:62,7:2228,251:-202.516,-20.7989,-2.13508,-182.075,0,-179.968	1/2:122:0,53,69:0:0:53,69:1904,2436:-353.21,-197.887,-181.933,-155.678,0,-134.907	1/2:142:0,54,88:0:0:54,88:1898,3134:-409.35,-254.897,-238.642,-154.806,0,-128.315	1/1:169:0,166,2:0:0:166,2:5938,72:-534.148,-49.971,0,-528.278,-44.0876,-527.676	1/2:34:0,16,18:0:0:16,18:576,645:-99.8529,-52.8816,-48.0651,-47.33,0,-41.9115	1/1:65:0,64,0:0:0:64,0:2296,0:-206.53,-19.2659,0,-206.53,-19.2659,-206.53	1/2:39:0,19,20:0:0:19,20:680,718:-114.306,-58.8545,-53.135,-55.8096,0,-49.789	1/2:18:0,6,12:0:0:6,12:216,427:-52.7548,-35.1288,-33.3226,-17.9843,0,-14.372	1/1:128:0,127,0:0:0:127,0:4544,0:-408.468,-38.2308,0,-408.468,-38.2308,-408.468	1/1:73:0,73,0:0:0:73,0:2582,0:-232.533,-21.9752,0,-232.533,-21.9752,-232.533	1/2:210:0,101,109:0:0:101,109:3530,3894:-603.344,-316.209,-285.805,-287.487,0,-254.675	1/1:170:0,170,0:0:0:170,0:6048,0:-544.321,-51.1751,0,-544.321,-51.1751,-544.321	1/1:56:0,56,0:0:0:56,0:2012,0:-181.301,-16.8577,0,-181.301,-16.8577,-181.301	1/2:99:0,48,51:0:0:48,51:1705,1820:-286.731,-147.821,-133.372,-139.265,0,-123.912	1/1:32:0,30,2:0:0:30,2:1035,72:-93.0945,-9.0309,0,-87.235,-2.81343,-86.633	1/1:118:0,118,0:0:0:118,0:4229,0:-380.626,-35.5215,0,-380.626,-35.5215,-380.626	1/2:195:0,93,100:0:0:93,100:3314,3521:-553.339,-283.291,-255.295,-270.056,0,-239.953	1/1:219:0,218,1:0:0:218,1:7802,36:-701.627,-65.6245,0,-698.692,-62.3299,-698.39	1/1:54:0,53,1:0:0:53,1:1908,36:-171.638,-15.9546,0,-168.703,-12.6599,-168.402	1/2:75:0,32,42:0:0:32,42:1137,1493:-214.215,-121.566,-111.933,-92.6536,0,-80.0103	1/1:61:0,61,0:0:0:61,0:2181,0:-196.552,-18.3628,0,-196.552,-18.3628,-196.552	1/1:154:0,153,0:0:0:153,0:5472,0:-492.172,-46.0576,0,-492.172,-46.0576,-492.172	1/2:30:0,15,15:0:0:15,15:536,536:-87.6439,-43.9412,-39.4258,-44.0594,0,-39.5439	1/1:64:0,63,0:0:0:63,0:2268,0:-204.023,-18.9649,0,-204.023,-18.9649,-204.023	1/2:69:0,33,36:0:0:33,36:1188,1286:-201.757,-104.871,-94.9371,-97.2434,0,-86.4063	1/2:36:0,28,8:0:0:28,8:993,287:-104.499,-23.6054,-15.1766,-81.2491,0,-78.8408	1/2:67:0,43,24:0:0:43,24:1510,859:-193.062,-70.1724,-57.2281,-123.245,0,-116.02	1/2:68:0,30,38:0:0:30,38:1076,1340:-197.045,-109.279,-100.248,-88.122,0,-76.6828	1/1:127:0,127,0:0:0:127,0:4538,0:-408.577,-38.2308,0,-408.577,-38.2308,-408.577	1/1:103:0,103,0:0:0:103,0:3699,0:-333.09,-31.0061,0,-333.09,-31.0061,-333.09
chr12	25225122	.	G	A	40546.9	PASS	AB=0.488634;ABP=7.69983;AC=48;AF=0.255319;AN=188;AO=2054;CIGAR=1X;DP=7790;DPB=7790;DPRA=1.28668;EPP=4463.21;EPPR=12445.5;GTI=0;LEN=1;MEANALT=1;MQM=36.5779;MQMR=49.7686;NS=94;NUMALT=1;ODDS=0.123296;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=73578;QR=203913;RO=5734;RPL=1036;RPP=3.35283;RPPR=44.7523;RPR=1018;RUN=1;SAF=1036;SAP=3.35283;SAR=1018;SRF=3034;SRP=45.2567;SRR=2700;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:34:34,0:34:1224:0:0:0,-10.235,-109.582	0/0:64:64,0:64:2300:0:0:0,-19.2659,-204.59	0/1:72:45,27:45:1603:27:960:-56.532,0,-121.701	0/1:78:44,34:44:1564:34:1220:-79.561,0,-116.901	0/1:26:15,11:15:540:11:396:-24.3037,0,-40.5509	0/1:36:17,19:17:608:19:676:-41.9263,0,-43.0332	0/0:63:63,0:63:2268:0:0:0,-18.9649,-202.568	0/1:98:55,43:55:1976:43:1540:-94.0187,0,-147.533	0/1:61:34,27:34:1216:27:964:-58.5063,0,-90.6289	0/0:50:49,1:49:1756:1:36:0,-11.5488,-152.925	0/1:163:81,82:81:2885:82:2939:-194.378,0,-209.541	0/1:185:102,83:102:3623:83:2984:-188.038,0,-266.738	0/1:169:89,80:89:3168:80:2853:-180.246,0,-231.867	0/1:145:72,73:72:2551:73:2601:-164.381,0,-182.907	0/0:154:154,0:154:5451:0:0:0,-46.3586,-486.805	0/1:148:74,74:74:2627:74:2633:-170.128,0,-190.182	0/0:100:100,0:100:3551:0:0:0,-30.103,-313.515	0/1:100:51,49:51:1810:49:1756:-108.808,0,-131.407	0/0:95:95,0:95:3340:0:0:0,-28.5978,-298.213	0/0:46:45,1:45:1598:1:36:0,-10.3447,-139.995	0/1:91:48,43:48:1702:43:1540:-96.1649,0,-124.52	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.3961	0/0:37:36,1:36:1264:1:36:0,-9.14878,-111.119	0/1:81:46,35:46:1633:35:1247:-73.7623,0,-120.538	0/0:31:31,0:31:1108:0:0:0,-9.33193,-98.881	0/1:143:68,75:68:2420:75:2696:-183.326,0,-174.198	0/0:117:117,0:117:4154:0:0:0,-35.2205,-369.89	0/0:70:69,1:69:2464:1:36:0,-17.6176,-216.258	0/1:81:44,37:44:1563:37:1324:-88.5938,0,-116.009	0/1:54:25,29:25:896:29:1040:-65.5366,0,-64.059	0/1:46:16,30:16:572:30:1066:-73.5063,0,-37.6967	0/1:4:2,2:2:68:2:72:-4.5995,0,-5.2333	0/0:7:7,0:7:240:0:0:0,-2.10721,-21.1083	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.76916	0/0:7:7,0:7:248:0:0:0,-2.10721,-22.4865	0/1:4:2,2:2:72:2:72:-5.23232,0,-5.61541	0/1:330:173,157:173:6135:157:5622:-374.613,0,-450.588	0/0:39:39,0:39:1388:0:0:0,-11.7402,-124.04	0/0:121:121,0:121:4266:0:0:0,-36.4246,-377.714	0/1:3:1,2:1:36:2:72:-5.28049,0,-2.68614	0/0:59:59,0:59:2107:0:0:0,-17.7608,-187.987	0/0:95:95,0:95:3370:0:0:0,-28.5978,-300.443	0/0:62:61,1:61:2179:1:36:0,-15.2763,-191.148	0/0:173:173,0:173:6166:0:0:0,-52.0782,-551.05	0/0:133:133,0:133:4703:0:0:0,-40.037,-419.651	0/1:54:31,23:31:1116:23:824:-54.5977,0,-84.1866	0/0:47:47,0:47:1665:0:0:0,-14.1484,-148.921	0/1:66:32,34:32:1148:34:1216:-81.2586,0,-82.9983	0/0:53:53,0:53:1887:0:0:0,-15.9546,-169.164	0/1:66:39,27:39:1391:27:968:-61.0845,0,-104.923	0/0:75:75,0:75:2667:0:0:0,-22.5772,-239.442	0/1:13:7,6:7:252:6:216:-14.9901,0,-18.5726	0/1:64:28,36:28:985:36:1296:-83.5348,0,-69.1455	0/1:31:17,14:17:590:14:500:-33.7085,0,-43.999	0/1:7:4,3:4:144:3:108:-7.5747,0,-11.088	0/1:66:27,39:27:951:39:1396:-93.0335,0,-65.587	0/0:29:29,0:29:1036:0:0:0,-8.72987,-92.1686	0/1:4:3,1:3:108:1:36:-2.0949,0,-8.54817	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.1899	0/0:41:41,0:41:1464:0:0:0,-12.3422,-130.183	0/1:157:71,86:71:2525:86:3092:-210.412,0,-178.344	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.4488	0/0:59:59,0:59:2091:0:0:0,-17.7608,-187.691	0/0:89:89,0:89:3170:0:0:0,-26.7917,-282.202	0/1:35:31,4:31:1099:4:144:-1.50565,0,-87.1425	0/1:50:24,26:24:847:26:936:-61.4734,0,-60.3179	0/1:95:40,55:40:1432:55:1964:-133.747,0,-99.5298	0/0:64:64,0:64:2279:0:0:0,-19.2659,-203.895	0/1:129:53,76:53:1866:76:2722:-183.442,0,-126.527	0/0:45:44,1:44:1580:1:36:0,-10.4918,-137.634	0/1:151:82,69:82:2920:69:2471:-163.156,0,-216.338	0/1:22:12,10:12:428:10:360:-25.2519,0,-31.5803	0/0:28:28,0:28:996:0:0:0,-8.42884,-89.2268	0/0:48:48,0:48:1712:0:0:0,-14.4494,-152.272	0/1:92:48,44:48:1699:44:1584:-100.63,0,-124.459	0/0:97:96,1:96:3436:1:36:0,-26.0123,-303.54	0/0:86:86,0:86:3067:0:0:0,-25.8886,-273.104	0/1:64:31,33:31:1099:33:1184:-75.5289,0,-79.0766	0/1:5:3,2:3:108:2:72:-4.61488,0,-8.48755	0/0:64:64,0:64:2273:0:0:0,-19.2659,-202.572	0/1:50:32,18:32:1144:18:644:-36.8315,0,-87.3201	0/0:133:132,1:132:4703:1:36:0,-36.5343,-416.376	0/0:150:150,0:150:5354:0:0:0,-45.1545,-477.369	0/1:161:81,80:81:2882:80:2872:-191.284,0,-209.698	0/0:178:176,0:176:6254:0:0:0,-52.9813,-558.008	0/0:282:280,2:280:9993:2:68:0,-78.7246,-886.956	0/1:56:30,26:30:1036:26:936:-56.5831,0,-75.707	0/0:125:125,0:125:4409:0:0:0,-37.6287,-392.689	0/1:132:65,67:65:2306:67:2408:-152.426,0,-166.173	0/1:157:84,73:84:2986:73:2600:-165.907,0,-219.115	0/1:193:103,90:103:3660:90:3240:-204.308,0,-268.207	0/1:141:55,86:55:1963:86:3092:-214.747,0,-132.686	0/0:72:72,0:72:2576:0:0:0,-21.6742,-230.054	0/0:254:252,2:252:8943:2:68:0,-70.4327,-792.438
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chr12	25328078	.	T	C	35126.8	PASS	AB=0.522249;ABP=20.9826;AC=47;AF=0.25;AN=188;AO=2190;CIGAR=1X;DP=8189;DPB=8189;DPRA=1.07494;EPP=4758.53;EPPR=13018.8;GTI=0;LEN=1;MEANALT=1.0566;MQM=59.9279;MQMR=59.984;NS=94;NUMALT=1;ODDS=0.684376;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=75702;QR=213139;RO=5994;RPL=2188;RPP=4741.18;RPPR=12984.1;RPR=2;RUN=1;SAF=2188;SAP=4741.18;SAR=2;SRF=5990;SRP=12984.1;SRR=4;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:25:25,0:25:876:0:0:0,-7.52575,-79.1543	0/0:114:114,0:114:4056:0:0:0,-34.3174,-365.227	0/1:167:83,84:83:2927:84:2932:-213.844,0,-213.392	0/1:177:71,106:71:2532:106:3683:-278.393,0,-174.847	0/1:68:32,36:32:1148:36:1251:-92.4184,0,-83.1598	0/1:25:6,19:6:216:19:668:-52.9199,0,-12.2648	0/0:90:90,0:90:3202:0:0:0,-27.0927,-288.403	0/1:140:72,68:72:2572:68:2321:-167,0,-189.586	0/1:62:18,44:18:616:44:1544:-120.586,0,-37.095	0/0:60:60,0:60:2133:0:0:0,-18.0618,-192.236	0/1:72:45,27:45:1586:27:926:-61.976,0,-121.355	0/1:50:27,23:27:955:23:755:-53.2045,0,-71.2134	0/1:57:21,36:21:734:36:1206:-91.6743,0,-49.2217	0/1:50:27,23:27:934:23:788:-56.1772,0,-69.3197	0/0:37:37,0:37:1324:0:0:0,-11.1381,-119.462	0/1:30:18,12:18:648:12:404:-27.6508,0,-49.621	0/0:54:54,0:54:1908:0:0:0,-16.2556,-171.998	0/1:30:13,17:13:468:17:574:-42.6752,0,-33.4287	0/0:29:29,0:29:1040:0:0:0,-8.72987,-93.9144	0/0:203:203,0:203:7230:0:0:0,-61.1091,-650.758	0/1:93:51,42:51:1824:42:1443:-102.164,0,-136.445	0/0:150:149,1:149:5309:1:36:0,-41.5562,-474.347	0/0:46:46,0:46:1627:0:0:0,-13.8474,-146.527	0/1:80:38,42:38:1355:42:1487:-110.041,0,-98.1673	0/0:56:56,0:56:2000:0:0:0,-16.8577,-180.274	0/1:337:148,189:148:5286:189:6616:-494.08,0,-374.428	0/0:167:166,1:166:5922:1:36:0,-46.6737,-529.492	0/0:19:19,0:19:667:0:0:0,-5.71957,-60.3546	0/1:281:134,147:134:4780:147:5114:-375.808,0,-345.767	0/1:181:84,97:84:2955:97:3378:-249.739,0,-211.697	0/1:154:83,71:83:2976:71:2481:-177.183,0,-221.714	0/1:7:2,4:2:72:4:140:-10.7806,0,-4.67071	0/0:25:25,0:25:887:0:0:0,-7.52575,-80.1481	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/1:7:6,1:6:216:1:36:-1.49107,0,-17.6833	0/1:14:5,9:5:161:9:324:-25.2914,0,-10.5921	0/1:106:57,49:57:2048:49:1608:-113.09,0,-152.682	0/0:187:187,0:187:6707:0:0:0,-56.2926,-603.697	0/0:59:59,0:59:2116:0:0:0,-17.7608,-190.709	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:145:145,0:145:5176:0:0:0,-43.6493,-465.979	0/0:32:32,0:32:1125:0:0:0,-9.63296,-101.556	0/0:140:140,0:140:4960:0:0:0,-42.1442,-446.55	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:30:30,0:30:1072:0:0:0,-9.0309,-96.7925	0/1:111:42,69:42:1492:69:2348:-177.791,0,-101.16	0/0:128:128,0:128:4553:0:0:0,-38.5318,-409.937	0/1:177:84,93:84:3007:93:3195:-234.49,0,-217.578	0/0:103:101,2:101:3572:2:72:0,-24.1694,-314.852	0/1:181:86,94:86:3061:94:3272:-240.157,0,-221.155	0/0:127:127,0:127:4507:0:0:0,-38.2308,-405.799	0/1:10:1,9:1:36:9:316:-25.7686,0,-0.587975	0/1:173:88,84:88:3143:84:2946:-213.239,0,-230.959	0/1:87:34,53:34:1212:53:1837:-139.416,0,-83.1967	0/1:9:5,4:5:176:4:144:-10.6043,0,-13.4757	0/1:130:53,77:53:1900:77:2666:-201.049,0,-132.144	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.1529	0/1:15:9,6:9:324:6:212:-14.9093,0,-24.9904	0/0:19:19,0:19:675:0:0:0,-5.71957,-61.077	0/0:41:40,1:40:1432:1:36:0,-8.74395,-125.579	0/1:120:60,60:60:2085:60:2057:-149.275,0,-151.775	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:241:240,0:240:8565:0:0:0,-72.2472,-770.49	0/0:174:174,0:174:6154:0:0:0,-52.3792,-553.962	0/0:42:41,1:41:1433:1:36:0,-9.04498,-125.665	0/1:65:37,28:37:1311:28:966:-67.6828,0,-98.7145	0/1:191:101,90:101:3615:90:3073:-219.3,0,-268.058	0/0:122:122,0:122:4314:0:0:0,-36.7257,-388.438	0/1:11:3,8:3:108:8:266:-20.9523,0,-6.76384	0/0:44:44,0:44:1555:0:0:0,-13.2453,-140.241	0/1:60:35,25:35:1251:25:867:-60.2808,0,-94.8325	0/1:33:20,13:20:716:13:455:-31.348,0,-54.8337	0/0:79:78,1:78:2788:1:36:0,-20.1831,-247.563	0/0:42:42,0:42:1499:0:0:0,-12.6433,-135.204	0/1:114:51,63:51:1776:63:2208:-164.664,0,-125.803	0/0:173:173,0:173:6138:0:0:0,-52.0782,-552.523	0/0:146:146,0:146:5244:0:0:0,-43.9504,-472.095	0/1:82:38,44:38:1364:44:1531:-113.394,0,-98.3763	0/1:8:4,4:4:144:4:135:-10.0743,0,-10.9054	0/0:124:124,0:124:4439:0:0:0,-37.3277,-399.68	0/1:131:57,74:57:2033:74:2605:-195.262,0,-143.806	0/0:130:130,0:130:4612:0:0:0,-39.1339,-415.246	0/0:77:77,0:77:2738:0:0:0,-23.1793,-246.662	0/1:40:17,23:17:595:23:799:-60.1864,0,-41.8355	0/0:62:62,0:62:2210:0:0:0,-18.6639,-199.164	0/0:73:73,0:73:2567:0:0:0,-21.9752,-231.279	0/1:38:21,17:21:743:17:581:-41.1713,0,-55.7542	0/0:64:64,0:64:2245:0:0:0,-19.2659,-202.31	0/1:46:23,23:23:813:23:728:-51.971,0,-59.6417	0/1:36:13,23:13:449:23:766:-58.4104,0,-29.9004	0/1:89:59,30:59:2088:30:1008:-64.2289,0,-161.396	0/1:35:12,23:12:432:23:790:-60.879,0,-28.6851	0/0:188:187,0:187:6629:0:0:0,-56.2926,-596.333	0/0:64:64,0:64:2262:0:0:0,-19.2659,-203.842
chr12	25328198	.	G	T	25375.4	PASS	AB=0.532609;ABP=28.5015;AC=49;AF=0.263441;AN=186;AO=1476;CIGAR=1X;DP=5383;DPB=5383;DPRA=1.12907;EPP=3208.1;EPPR=8484.78;GTI=1;LEN=1;MEANALT=1;MQM=59.8984;MQMR=59.9419;NS=93;NUMALT=1;ODDS=0.00676065;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=52850;QR=139219;RO=3906;RPL=3;RPP=3182.1;RPPR=8458.74;RPR=1473;RUN=1;SAF=3;SAP=3182.1;SAR=1473;SRF=3;SRP=8458.74;SRR=3903;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:47:47,0:47:1688:0:0:0,-14.1484,-152.207	0/0:42:42,0:42:1484:0:0:0,-12.6433,-133.843	0/1:67:38,29:38:1360:29:1044:-74.1058,0,-102.532	0/1:97:40,57:40:1436:57:2040:-154.67,0,-100.338	0/1:51:18,33:18:639:33:1171:-89.5657,0,-42.4857	0/1:38:14,24:14:495:24:860:-66.2827,0,-33.4439	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/1:93:48,45:48:1700:45:1616:-117.734,0,-125.259	0/1:76:33,43:33:1180:43:1544:-116.367,0,-83.6298	0/0:59:59,0:59:2104:0:0:0,-17.7608,-189.612	0/1:20:7,13:7:252:13:468:-36.439,0,-17.0084	0/1:46:26,20:26:910:20:716:-50.9203,0,-68.0962	0/1:44:21,23:21:756:23:828:-61.5988,0,-55.1219	0/1:42:24,18:24:860:18:648:-46.0086,0,-65.0786	0/0:54:54,0:54:1892:0:0:0,-16.2556,-170.553	0/1:42:22,20:22:792:20:708:-51.4018,0,-58.9624	0/0:32:32,0:32:1143:0:0:0,-9.63296,-103.179	0/1:39:25,14:25:896:14:504:-33.9579,0,-69.2169	0/0:25:25,0:25:883:0:0:0,-7.52575,-79.7875	0/0:123:123,0:123:4400:0:0:0,-37.0267,-396.173	0/1:85:34,51:34:1211:51:1828:-139.213,0,-83.7034	0/0:48:48,0:48:1698:0:0:0,-14.4494,-153.105	0/0:49:48,0:48:1707:0:0:0,-14.4494,-153.554	0/1:110:56,54:56:1993:54:1933:-140.761,0,-146.529	0/0:34:34,0:34:1186:0:0:0,-10.235,-107.041	0/1:244:105,139:105:3763:139:4960:-373.096,0,-265.417	0/0:88:88,0:88:3132:0:0:0,-26.4906,-282.105	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0016	0/1:103:36,67:36:1261:67:2396:-184.891,0,-82.782	0/1:64:20,44:20:720:44:1559:-121.334,0,-45.8629	0/1:57:27,30:27:972:30:1076:-79.9941,0,-70.6392	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	.:.:.:.:.:.:.:.	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:4:2,2:2:57:2:72:-5.6326,0,-4.20919	0/1:157:77,80:77:2744:80:2841:-208.667,0,-199.939	0/0:79:79,0:79:2810:0:0:0,-23.7814,-253.137	0/0:31:31,0:31:1103:0:0:0,-9.33193,-99.5797	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/0:63:63,0:63:2246:0:0:0,-18.9649,-202.402	0/0:15:15,0:15:536:0:0:0,-4.51545,-48.5748	0/0:57:57,0:57:2016:0:0:0,-17.1587,-181.711	0/0:48:48,0:48:1687:0:0:0,-14.4494,-152.027	0/0:47:47,0:47:1649:0:0:0,-14.1484,-148.696	0/1:103:43,60:43:1536:60:2144:-162.222,0,-107.527	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/1:99:26,73:26:936:73:2620:-206.245,0,-54.7575	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.8	0/1:47:20,27:20:704:27:971:-73.5594,0,-49.5361	0/0:130:130,0:130:4630:0:0:0,-39.1339,-416.863	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/1:82:36,46:36:1288:46:1652:-124.284,0,-91.5391	0/1:17:8,9:8:288:9:324:-24.3883,0,-21.1499	0/1:12:3,9:3:104:9:324:-25.8935,0,-6.09045	0/1:75:32,43:32:1152:43:1539:-116.225,0,-81.4129	0/0:26:26,0:26:932:0:0:0,-7.82678,-84.1927	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	0/0:25:25,0:25:900:0:0:0,-7.52575,-81.321	0/1:66:40,26:40:1428:26:936:-64.6915,0,-108.95	0/0:6:6,0:6:212:0:0:0,-1.80618,-19.4248	0/0:100:100,0:100:3574:0:0:0,-30.103,-321.867	0/0:177:175,2:175:6268:2:72:0,-46.4456,-557.371	0/1:60:52,8:52:1868:8:288:-8.20561,0,-150.337	0/1:51:22,29:22:773:29:1040:-78.5618,0,-54.537	0/1:123:55,68:55:1968:68:2440:-182.828,0,-140.368	0/0:63:63,0:63:2218:0:0:0,-18.9649,-199.882	0/1:6:3,3:3:108:3:104:-7.8663,0,-8.26899	0/0:69:69,0:69:2467:0:0:0,-20.7711,-222.283	0/1:54:28,26:28:991:26:932:-67.9432,0,-73.2479	0/1:11:4,7:4:144:7:252:-19.7176,0,-10.0023	0/0:70:70,0:70:2508:0:0:0,-21.0721,-225.972	0/0:52:52,0:52:1859:0:0:0,-15.6536,-167.589	0/1:130:72,58:72:2588:58:2080:-148.336,0,-194.035	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.821	0/0:64:64,0:64:2251:0:0:0,-19.2659,-202.762	0/1:59:28,31:28:1004:31:1116:-82.9828,0,-72.9151	0/1:8:1,7:1:36:7:252:-20.6207,0,-1.19003	0/0:91:91,0:91:3268:0:0:0,-27.3937,-294.335	0/1:59:27,32:27:964:32:1148:-85.8691,0,-69.3161	0/0:69:69,0:69:2468:0:0:0,-20.7711,-222.372	0/0:87:87,0:87:3081:0:0:0,-26.1896,-277.516	0/1:32:15,17:15:540:17:612:-45.7805,0,-39.3036	0/0:70:70,0:70:2479:0:0:0,-21.0721,-223.361	0/0:97:97,0:97:3446:0:0:0,-29.1999,-310.265	0/1:31:20,11:20:720:11:396:-26.6508,0,-55.7968	0/0:63:63,0:63:2256:0:0:0,-18.9649,-203.289	0/1:55:30,25:30:1076:25:892:-64.043,0,-80.5962	0/1:16:9,7:9:324:7:252:-18.2125,0,-24.6894	0/1:38:28,10:28:995:10:356:-20.9421,0,-78.4249	0/1:40:10,30:10:352:30:1080:-85.4721,0,-19.977	0/0:66:66,0:66:2368:0:0:0,-19.868,-213.37	0/0:68:68,0:68:2399:0:0:0,-20.47,-216.165
chr12	25328203	.	TTT	ATG,ATT	113794	PASS	AB=0.471821,0.524928;ABP=22.1017,17.9502;AC=137,49;AF=0.736559,0.263441;AN=186;AO=3956,1464;CIGAR=1X1M1X,1X2M;DP=5440;DPB=5440.67;DPRA=39.8315,1.18593;EPP=8524.01,3130.14;EPPR=7.35324;GTI=2;LEN=3,1;MEANALT=1.76923,2.11111;MQM=59.9348,59.9153;MQMR=60;NS=93;NUMALT=2;ODDS=2.04189;PAIRED=0,0;PAIREDR=0;PAO=0.5,0.5;PQA=13.5,13.5;PQR=0;PRO=1;QA=137449,52280;QR=49;RO=2;RPL=11,9;RPP=8498.08,3104.35;RPPR=7.35324;RPR=3945,1455;RUN=1,1;SAF=3,3;SAP=8567.32,3156.04;SAR=3953,1461;SRF=0;SRP=7.35324;SRR=2;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:47:0,47,0:0:0:47,0:1602,0:-144.462,-14.1484,0,-144.462,-14.1484,-144.462	1/1:43:0,42,1:0:0:42,1:1470,36:-132.225,-12.6433,0,-129.288,-9.34702,-128.987	1/2:67:0,38,29:0:0:38,29:1305,1025:-189.787,-83.8308,-72.3917,-106.306,0,-97.5757	1/2:97:0,41,56:0:0:41,56:1470,2012:-284.389,-164.493,-152.151,-120.254,0,-103.397	1/2:52:0,18,34:0:0:18,34:634,1182:-147.792,-96.1737,-90.7551,-51.9683,0,-41.7333	1/2:38:0,14,24:0:0:14,24:497,860:-110.991,-70.4971,-66.2827,-40.8503,0,-33.6256	1/1:71:0,68,0:0:0:68,0:2373,0:-213.49,-20.47,0,-213.49,-20.47,-213.49	1/2:91:0,48,43:0:0:48,43:1679,1529:-261.521,-124.957,-110.507,-136.917,0,-123.972	1/2:77:0,32,45:0:0:32,45:1102,1616:-221.676,-132.175,-122.543,-89.8507,0,-76.3043	1/1:60:0,60,0:0:0:60,0:2068,0:-186.371,-18.0618,0,-186.371,-18.0618,-186.371	1/2:20:0,7,13:0:0:7,13:250,468:-58.9278,-38.5463,-36.439,-20.7395,0,-16.8261	1/2:46:0,26,20:0:0:26,20:887,720:-131.053,-59.1082,-51.2814,-72.2969,0,-66.2763	1/2:44:0,21,23:0:0:21,23:749,828:-128.977,-67.9204,-61.5988,-61.4142,0,-54.4905	1/2:42:0,24,18:0:0:24,18:851,648:-122.56,-53.2333,-46.0086,-69.6844,0,-64.2659	1/1:54:0,53,1:0:0:53,1:1876,36:-168.759,-15.9546,0,-165.822,-12.6573,-165.521	1/2:43:0,22,21:0:0:22,21:773,744:-123.877,-60.9621,-54.3395,-63.2679,0,-56.9463	1/1:32:0,32,0:0:0:32,0:1108,0:-100.024,-9.63296,0,-100.024,-9.63296,-100.024	1/2:39:0,25,14:0:0:25,14:881,504:-113.207,-41.4837,-33.9579,-72.0801,0,-67.8656	1/1:25:0,25,0:0:0:25,0:877,0:-79.2479,-7.52575,0,-79.2479,-7.52575,-79.2479	1/1:127:0,126,1:0:0:126,1:4329,36:-389.432,-37.9298,0,-386.495,-34.6325,-386.194	1/2:86:0,34,51:0:0:34,51:1195,1824:-245.992,-148.729,-138.494,-97.2576,0,-81.9051	1/1:48:0,47,0:0:0:47,0:1651,0:-148.595,-14.1484,0,-148.595,-14.1484,-148.595	1/1:49:0,49,0:0:0:49,0:1665,0:-150.129,-14.7505,0,-150.129,-14.7505,-150.129	1/2:110:0,57,53:0:0:57,53:1970,1882:-313.526,-153.464,-136.305,-160.412,0,-144.458	1/1:35:0,35,0:0:0:35,0:1190,0:-107.397,-10.5361,0,-107.397,-10.5361,-107.397	1/2:243:0,108,135:0:0:108,135:3698,4831:-694.47,-394.305,-361.794,-300.513,0,-259.874	1/1:88:0,88,0:0:0:88,0:3045,0:-274.28,-26.4906,0,-274.28,-26.4906,-274.28	1/1:21:0,21,0:0:0:21,0:737,0:-66.6468,-6.32163,0,-66.6468,-6.32163,-66.6468	1/2:105:1,38,66:1:28:38,66:1318,2368:-297.836,-191.011,-181.79,-104.978,0,-87.3273	1/2:63:0,20,42:0:0:20,42:698,1489:-178.149,-121.378,-115.357,-56.838,0,-44.1948	1/2:58:0,28,30:0:0:28,30:955,1061:-164.247,-86.7685,-78.3396,-77.8258,0,-68.7949	1/2:8:0,5,3:0:0:5,3:180,104:-23.4951,-8.79971,-7.29456,-15.0469,0,-14.1438	1/1:5:0,5,0:0:0:5,0:156,0:-14.3481,-1.50515,0,-14.3481,-1.50515,-14.3481	.:.:.:.:.:.:.:.	1/1:1:0,1,0:0:0:1,0:28,0:-2.79973,-0.30103,0,-2.79973,-0.30103,-2.79973	1/2:4:0,2,2:0:0:2,2:72,72:-12.1095,-6.23466,-5.6326,-6.23466,0,-5.6326	1/2:157:1,78,78:1:21:78,78:2736,2781:-447.596,-225.249,-203.356,-221.202,0,-199.309	1/1:82:0,81,0:0:0:81,0:2801,0:-252.048,-24.3834,0,-252.048,-24.3834,-252.048	1/1:33:0,33,0:0:0:33,0:1159,0:-104.614,-9.93399,0,-104.614,-9.93399,-104.614	2/2:1:0,0,1:0:0:0,1:0,32:-3.19931,-3.19931,-3.19931,-0.30103,-0.30103,0	1/1:65:0,65,0:0:0:65,0:2228,0:-200.781,-19.567,0,-200.781,-19.567,-200.781	1/1:15:0,15,0:0:0:15,0:536,0:-48.575,-4.51545,0,-48.575,-4.51545,-48.575	1/1:59:0,59,0:0:0:59,0:2022,0:-182.248,-17.7608,0,-182.248,-17.7608,-182.248	1/1:50:0,49,1:0:0:49,1:1663,36:-149.586,-14.7505,0,-146.648,-11.4532,-146.347	1/1:47:0,47,0:0:0:47,0:1600,0:-144.282,-14.1484,0,-144.282,-14.1484,-144.282	1/2:101:0,43,58:0:0:43,58:1523,2067:-292.904,-168.841,-155.896,-124.418,0,-106.958	1/1:40:0,40,0:0:0:40,0:1412,0:-127.31,-12.0412,0,-127.31,-12.0412,-127.31	1/2:101:0,27,74:0:0:27,74:912,2630:-288.583,-214.668,-206.54,-74.2573,0,-51.9811	1/1:78:0,77,0:0:0:77,0:2640,0:-237.564,-23.1793,0,-237.564,-23.1793,-237.564	1/2:47:0,20,27:0:0:20,27:702,972:-136.798,-79.6701,-73.6495,-57.4824,0,-49.3546	1/1:137:0,136,0:0:0:136,0:4721,0:-424.775,-40.9401,0,-424.775,-40.9401,-424.775	2/2:2:0,0,2:0:0:0,2:0,72:-6.83672,-6.83672,-6.83672,-0.60206,-0.60206,0	1/2:84:0,37,46:0:0:37,46:1282,1636:-237.579,-133.39,-122.252,-104.248,0,-90.4003	1/2:16:0,8,8:0:0:8,8:288,288:-47.3585,-23.8592,-21.4509,-23.8592,0,-21.4509	1/2:12:0,3,9:0:0:3,9:91,324:-34.0668,-26.7966,-25.8935,-7.58757,0,-4.8783	1/2:76:0,32,44:0:0:32,44:1112,1580:-219.646,-129.246,-119.613,-90.7519,0,-77.5066	1/1:26:0,26,0:0:0:26,0:909,0:-82.1238,-7.82678,0,-82.1238,-7.82678,-82.1238	1/1:5:0,5,0:0:0:5,0:173,0:-15.9093,-1.50515,0,-15.909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chr12	25331933	.	C	T	336258	PASS	AB=0.480899;ABP=30.2192;AC=140;AF=0.744681;AN=188;AO=11911;CIGAR=1X;DP=16387;DPB=16387;DPRA=0;EPP=3400.59;EPPR=1503.03;GTI=0;LEN=1;MEANALT=1.02128;MQM=59.7455;MQMR=59.8963;NS=94;NUMALT=1;ODDS=0.973112;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=424850;QR=159774;RO=4474;RPL=1628;RPP=13659.5;RPPR=4458.99;RPR=10283;RUN=1;SAF=5425;SAP=208.238;SAR=6486;SRF=2080;SRP=50.8642;SRR=2394;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:121:0,121:0:0:121:4323:-388.942,-36.4246,0	1/1:179:0,179:0:0:179:6376:-573.805,-53.8844,0	0/1:245:122,123:122:4372:123:4374:-320.022,0,-319.9	0/1:357:191,165:191:6828:165:5909:-424.51,0,-507.214	0/1:172:96,76:96:3439:76:2701:-191.556,0,-257.943	0/1:112:55,57:55:1960:57:2028:-149.029,0,-142.665	1/1:171:0,171:0:0:171:6128:-551.608,-51.4761,0	0/1:268:121,147:121:4321:147:5226:-389.757,0,-308.383	0/1:251:122,129:122:4351:129:4591:-337.762,0,-316.167	1/1:147:0,147:0:0:147:5232:-470.97,-44.2514,0	0/1:164:78,86:78:2795:86:3073:-227.428,0,-202.41	0/1:269:140,129:140:4979:129:4594:-332.244,0,-367.259	0/1:208:102,106:102:3632:106:3779:-277.564,0,-264.47	0/1:196:99,97:99:3516:97:3465:-253.013,0,-257.644	1/1:200:0,200:0:0:200:7176:-645.826,-60.206,0	0/1:216:107,109:107:3815:109:3887:-285.002,0,-278.481	1/1:144:0,144:0:0:144:5133:-461.998,-43.3483,0	0/1:135:72,63:72:2575:63:2243:-161.472,0,-191.357	1/1:108:0,108:0:0:108:3857:-347.288,-32.5112,0	1/1:223:0,223:0:0:223:7927:-713.407,-67.1297,0	0/1:271:137,134:137:4908:134:4768:-347.676,0,-360.285	1/1:68:0,68:0:0:68:2429:-218.857,-20.47,0	1/1:164:0,164:0:0:164:5856:-527.096,-49.3689,0	0/1:162:89,73:89:3164:73:2620:-187.217,0,-236.188	1/1:161:0,161:0:0:161:5768:-519.235,-48.4658,0	0/1:393:196,197:196:6982:197:7045:-515.765,0,-510.143	1/1:404:0,404:0:0:404:14399:-1295.49,-121.616,0	1/1:67:1,66:1:36:66:2345:-207.71,-16.5707,0	0/1:337:189,148:189:6727:148:5290:-374.76,0,-504.05	0/1:137:73,64:73:2588:64:2246:-161.108,0,-191.905	0/1:168:84,84:84:2999:84:3012:-220.721,0,-219.568	0/1:14:8,6:8:288:6:216:-15.5761,0,-22.053	1/1:39:2,37:2:72:37:1316:-111.905,-4.90345,0	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	0/1:12:9,3:9:320:3:104:-6.09045,0,-25.53	0/1:21:5,16:5:176:16:572:-45.4918,0,-9.86339	0/1:575:326,249:326:11672:249:8813:-620.03,0,-877.247	1/1:123:1,122:1:36:122:4318:-385.182,-33.4284,0	1/1:158:0,158:0:0:158:5656:-509.008,-47.5627,0	0/1:8:2,6:2:72:6:212:-17.0166,0,-4.42848	1/1:205:0,205:0:0:205:7337:-660.327,-61.7112,0	1/1:73:0,73:0:0:73:2593:-233.572,-21.9752,0	1/1:389:1,388:1:36:388:13816:-1239.19,-113.502,0	1/1:211:0,211:0:0:211:7497:-674.756,-63.5173,0	1/1:141:0,141:0:0:141:4990:-449.23,-42.4452,0	0/1:146:95,51:95:3372:51:1801:-118.419,0,-259.732	1/1:126:0,126:0:0:126:4505:-405.551,-37.9298,0	0/1:222:125,97:125:4467:97:3480:-246.581,0,-335.365	1/1:137:0,137:0:0:137:4904:-441.492,-41.2411,0	0/1:217:111,106:111:3996:106:3797:-276.578,0,-294.501	1/1:193:0,193:0:0:193:6849:-616.46,-58.0988,0	0/1:17:10,7:10:360:7:252:-17.9114,0,-27.626	0/1:200:111,89:111:3950:89:3192:-227.239,0,-295.477	0/1:54:29,25:29:1044:25:900:-65.0654,0,-78.0192	0/1:7:2,5:2:72:5:180:-14.4449,0,-4.72951	0/1:263:152,111:152:5460:111:3976:-278.665,0,-412.349	1/1:138:0,138:0:0:138:4922:-443.129,-41.5421,0	0/1:13:5,8:5:180:8:288:-22.354,0,-12.6387	1/1:23:0,23:0:0:23:805:-72.761,-6.92369,0	1/1:152:1,151:1:32:151:5406:-483.398,-42.5572,0	0/1:227:118,109:118:4221:109:3904:-283.203,0,-311.689	1/1:12:0,12:0:0:12:424:-38.4964,-3.61236,0	1/1:185:2,183:2:72:183:6509:-578.986,-48.8538,0	1/1:247:1,246:1:36:246:8786:-786.823,-70.7561,0	1/1:100:3,97:3:108:97:3450:-300.629,-20.0278,0	0/1:106:60,46:60:2148:46:1637:-115.708,0,-161.675	0/1:280:139,140:139:4983:140:5013:-366.934,0,-364.263	1/1:149:1,148:1:36:148:5301:-473.608,-41.2552,0	0/1:96:53,43:53:1887:43:1516:-107.788,0,-141.206	1/1:74:1,73:1:36:73:2624:-232.786,-18.6779,0	0/1:205:116,89:116:4160:89:3122:-219.47,0,-312.866	0/1:30:11,19:11:392:19:680:-52.4983,0,-26.5892	1/1:143:0,143:0:0:143:5081:-457.324,-43.0473,0	1/1:149:1,148:1:36:148:5299:-473.441,-41.2552,0	0/1:372:174,198:174:6219:198:7059:-523.291,0,-447.819	1/1:207:0,207:0:0:207:7323:-658.953,-62.3132,0	1/1:265:0,265:0:0:265:9501:-854.867,-79.773,0	0/1:227:97,130:97:3456:130:4624:-347.92,0,-242.912	0/1:25:11,14:11:396:14:504:-38.1723,0,-28.457	1/1:190:0,190:0:0:190:6799:-611.942,-57.1957,0	0/1:226:104,122:104:3709:122:4368:-325.243,0,-265.697	1/1:329:1,328:1:36:328:11730:-1051.94,-95.4406,0	1/1:226:0,226:0:0:226:8039:-723.482,-68.0328,0	0/1:166:87,79:87:3101:79:2831:-205.049,0,-229.345	1/1:207:1,206:1:36:206:7318:-655.05,-58.7149,0	1/1:360:2,358:2:72:358:12772:-1142.4,-101.534,0	0/1:90:42,48:42:1512:48:1720:-127.935,0,-109.26	1/1:187:0,187:0:0:187:6648:-597.75,-56.2926,0	0/1:211:105,106:105:3720:106:3804:-279.011,0,-271.431	0/1:103:68,35:68:2419:35:1260:-82.6994,0,-186.96	0/1:223:97,126:97:3464:126:4497:-337.724,0,-244.772	0/1:169:110,59:110:3927:59:2112:-139.466,0,-302.749	1/1:198:0,198:0:0:198:7074:-636.71,-59.6039,0	1/1:301:0,301:0:0:301:10772:-969.16,-90.61,0
chr12	25332701	.	T	C	49038.3	PASS	AB=0.480373;ABP=23.4677;AC=48;AF=0.255319;AN=188;AO=2953;CIGAR=1X;DP=12887;DPB=12887;DPRA=0.941887;EPP=6415.37;EPPR=21563.6;GTI=1;LEN=1;MEANALT=1.06897;MQM=59.9472;MQMR=59.9886;NS=94;NUMALT=1;ODDS=10.7561;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=105719;QR=355973;RO=9929;RPL=0;RPP=6415.37;RPPR=21563.6;RPR=2953;RUN=1;SAF=2953;SAP=6415.37;SAR=0;SRF=9929;SRP=21563.6;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/0:210:210,0:210:7536:0:0:0,-63.2163,-678.278	0/1:177:70,107:70:2516:107:3814:-290.152,0,-173.408	0/1:228:118,110:118:4224:110:3936:-285.708,0,-311.704	0/1:86:48,38:48:1724:38:1352:-96.0912,0,-129.557	0/1:16:14,2:14:504:2:72:-2.02024,0,-40.8816	0/0:195:195,0:195:6972:0:0:0,-58.7008,-627.541	0/1:289:168,120:168:6036:120:4308:-300.825,0,-456.276	0/1:71:35,35:35:1260:35:1260:-92.2732,0,-92.2736	0/0:124:124,0:124:4417:0:0:0,-37.3277,-397.703	0/1:113:76,37:76:2736:37:1324:-85.4457,0,-212.465	0/1:82:44,38:44:1580:38:1352:-97.2959,0,-117.807	0/1:87:42,45:42:1503:45:1620:-119.9,0,-109.374	0/1:99:54,45:54:1917:45:1604:-114.848,0,-143.003	0/0:72:72,0:72:2588:0:0:0,-21.6742,-233.168	0/1:91:43,48:43:1540:48:1720:-127.692,0,-111.499	0/0:79:79,0:79:2836:0:0:0,-23.7814,-255.478	0/1:74:39,35:39:1400:35:1252:-90.7089,0,-104.023	0/0:70:70,0:70:2504:0:0:0,-21.0721,-225.613	0/0:373:373,0:373:13353:0:0:0,-112.284,-1201.56	0/1:178:101,77:101:3612:77:2753:-194.427,0,-271.701	0/0:206:206,0:206:7380:0:0:0,-62.0122,-664.247	0/0:102:102,0:102:3672:0:0:0,-30.7051,-330.681	0/1:125:64,61:64:2300:61:2152:-156.314,0,-169.632	0/0:164:164,0:164:5884:0:0:0,-49.3689,-529.669	0/1:431:237,194:237:8500:194:6948:-495.627,0,-635.253	0/0:442:441,1:441:15813:1:36:0,-129.457,-1419.26	0/0:57:57,0:57:2044:0:0:0,-17.1587,-184.232	0/1:598:305,293:305:10956:293:10512:-765.973,0,-805.915	0/1:114:66,48:66:2360:48:1724:-121.128,0,-178.341	0/1:148:75,73:75:2688:73:2609:-190.504,0,-197.612	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.166	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/1:18:7,11:7:252:11:392:-30.2015,0,-17.6104	0/1:21:4,17:4:144:17:612:-49.0918,0,-6.99199	0/1:224:104,120:104:3721:120:4305:-320.195,0,-267.659	0/0:233:233,0:233:8341:0:0:0,-70.14,-750.695	0/0:98:97,1:97:3480:1:36:0,-25.9027,-309.813	0/1:13:4,9:4:144:9:320:-25.229,0,-9.40023	0/0:164:163,1:163:5845:1:36:0,-45.7706,-522.56	0/0:42:41,1:41:1472:1:36:0,-9.04498,-129.178	0/0:215:215,0:215:7705:0:0:0,-64.7214,-693.481	0/0:128:127,1:127:4564:1:36:0,-34.9336,-407.326	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:124:57,67:57:2048:67:2404:-179.289,0,-147.264	0/0:194:194,0:194:6957:0:0:0,-58.3998,-626.192	0/1:228:122,106:122:4384:106:3812:-274.641,0,-326.097	0/0:192:192,0:192:6877:0:0:0,-57.7978,-618.996	0/1:237:130,106:130:4661:106:3800:-270.794,0,-348.246	0/0:267:267,0:267:9563:0:0:0,-80.375,-860.622	0/1:21:8,13:8:288:13:453:-34.7777,0,-19.9458	0/1:219:127,92:127:4537:92:3312:-232.371,0,-342.571	0/1:49:25,24:25:900:24:845:-61.6175,0,-66.5705	0/1:28:18,10:18:644:10:360:-24.3155,0,-49.8618	0/1:196:92,104:92:3292:104:3709:-275.01,0,-237.498	0/0:90:89,1:89:3192:1:36:0,-23.4944,-283.905	0/1:33:14,19:14:504:19:680:-51.5952,0,-35.7641	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:73:73,0:73:2620:0:0:0,-21.9752,-236.047	0/1:118:61,57:61:2196:57:2044:-148.71,0,-162.384	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:214:214,0:214:7680:0:0:0,-64.4204,-691.232	0/0:271:269,2:269:9632:2:72:0,-74.7424,-859.996	0/0:86:80,6:80:2880:6:216:0,-6.09807,-239.645	0/1:149:70,78:70:2508:78:2800:-207.327,0,-181.06	0/1:213:113,100:113:4036:100:3588:-259.007,0,-299.31	0/0:127:127,0:127:4525:0:0:0,-38.2308,-407.418	0/1:43:20,23:20:720:23:828:-61.8998,0,-52.1845	0/0:99:99,0:99:3540:0:0:0,-29.802,-318.809	0/1:81:54,27:54:1944:27:968:-63.0539,0,-150.853	0/1:46:27,19:27:968:19:684:-48.0429,0,-73.59	0/0:100:100,0:100:3584:0:0:0,-30.103,-322.767	0/0:91:91,0:91:3260:0:0:0,-27.3937,-293.621	0/1:131:57,74:57:2036:74:2644:-198.769,0,-144.077	0/0:257:257,0:257:9228:0:0:0,-77.3647,-830.485	0/0:133:133,0:133:4757:0:0:0,-40.037,-428.286	0/1:173:81,92:81:2900:92:3294:-244.601,0,-209.158	0/1:14:5,9:5:180:9:320:-24.9279,0,-12.3376	0/0:172:171,1:171:6128:1:36:0,-48.1789,-548.021	0/1:213:119,94:119:4284:94:3380:-240.29,0,-321.616	0/0:412:412,0:412:14800:0:0:0,-124.024,-1331.64	0/0:139:139,0:139:4992:0:0:0,-41.8432,-449.426	0/1:93:54,39:54:1936:39:1384:-96.8337,0,-146.521	0/0:112:112,0:112:4017:0:0:0,-33.7154,-361.716	0/0:161:160,1:160:5728:1:36:0,-44.8676,-511.969	0/1:59:33,26:33:1188:26:936:-66.7987,0,-89.4678	0/0:71:71,0:71:2544:0:0:0,-21.3731,-229.211	0/1:73:31,42:31:1116:42:1484:-111.857,0,-78.7765	0/1:82:45,37:45:1616:37:1324:-94.7776,0,-121.046	0/1:133:68,65:68:2432:65:2332:-170.096,0,-179.099	0/1:67:22,45:22:780:45:1601:-124.21,0,-50.354	0/0:212:211,0:211:7572:0:0:0,-63.5173,-681.152	0/0:127:127,0:127:4560:0:0:0,-38.2308,-410.563
chr12	25339736	.	G	A	364101	PASS	AB=0.49838;ABP=3.21428;AC=140;AF=0.744681;AN=188;AO=13606;CIGAR=1X;DP=18131;DPB=18131;DPRA=0;EPP=29539.4;EPPR=9774.64;GTI=0;LEN=1;MEANALT=1.18085;MQM=59.979;MQMR=59.9927;NS=94;NUMALT=1;ODDS=14.4778;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=481995;QR=154976;RO=4504;RPL=6364;RPP=126.041;RPPR=52.3795;RPR=7242;RUN=1;SAF=6363;SAP=126.602;SAR=7243;SRF=2413;SRP=52.9985;SRR=2091;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:61:0,61:0:0:61:2145:-193.314,-18.3628,0	1/1:277:0,277:0:0:277:9816:-883.392,-83.3853,0	0/1:236:115,121:115:4002:121:4311:-317.125,0,-289.329	0/1:410:205,205:205:7027:205:7326:-535.968,0,-509.091	0/1:123:62,61:62:2119:61:2152:-156.919,0,-153.946	0/1:119:51,68:51:1769:68:2413:-181.603,0,-123.666	1/1:323:1,322:1:36:322:11469:-1028.49,-93.6344,0	0/1:290:150,140:150:5250:140:4905:-354.306,0,-385.344	0/1:180:100,78:100:3468:78:2724:-191.517,0,-258.447	1/1:188:0,188:0:0:188:6591:-592.257,-56.5936,0	0/1:188:82,106:82:2750:106:3730:-279.307,0,-191.149	0/1:188:86,102:86:2907:102:3602:-267.687,0,-205.273	0/1:182:93,87:93:3207:87:3095:-224.307,0,-234.388	0/1:169:82,87:82:2720:87:3044:-223.316,0,-194.168	1/1:197:0,197:0:0:197:6993:-629.438,-59.3029,0	0/1:135:63,72:63:2106:72:2537:-187.94,0,-149.165	1/1:168:0,168:0:0:168:5958:-536.332,-50.573,0	0/1:151:74,77:74:2525:77:2723:-199.856,0,-182.048	1/1:160:0,160:0:0:160:5658:-509.343,-48.1648,0	1/1:329:1,328:1:32:328:11630:-1043.25,-95.8396,0	0/1:279:126,153:126:4445:153:5418:-403.764,0,-316.236	1/1:119:0,119:0:0:119:4240:-381.774,-35.8226,0	1/1:167:0,167:0:0:167:5895:-530.664,-50.272,0	0/1:223:137,85:137:4761:85:3009:-203.942,0,-361.555	1/1:155:0,154:0:0:154:5458:-490.989,-46.3586,0	0/1:596:278,315:278:9637:315:11162:-825.607,0,-688.433	1/1:526:1,525:1:36:525:18649:-1674.4,-154.744,0	1/1:90:0,90:0:0:90:3201:-288.313,-27.0927,0	0/1:499:265,234:265:9189:234:8339:-600.304,0,-676.794	0/1:153:77,76:77:2688:76:2697:-196.916,0,-196.106	0/1:221:121,100:121:4245:100:3536:-251.923,0,-315.703	0/1:21:10,11:10:351:11:392:-29.2984,0,-25.605	1/1:18:0,18:0:0:18:636:-57.5675,-5.41854,0	1/1:17:0,17:0:0:17:608:-55.052,-5.11751,0	0/1:26:14,12:14:491:12:432:-31.3944,0,-36.6943	0/1:24:8,16:8:284:16:576:-44.9503,0,-18.6786	0/1:434:207,226:207:7041:226:7972:-586.878,0,-503.151	1/1:225:0,225:0:0:225:7977:-717.958,-67.7318,0	1/1:229:0,229:0:0:229:8103:-729.293,-68.9359,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	1/1:262:0,262:0:0:262:9229:-830.59,-78.8699,0	1/1:115:1,114:1:32:114:4009:-357.802,-31.4191,0	1/1:221:2,219:2:72:219:7771:-692.586,-59.6909,0	1/1:196:0,196:0:0:196:6919:-622.785,-59.0019,0	1/1:166:0,166:0:0:166:5884:-529.675,-49.971,0	0/1:173:74,99:74:2530:99:3547:-267.359,0,-175.867	1/1:235:0,234:0:0:234:8279:-744.684,-70.441,0	0/1:321:153,168:153:5253:168:5978:-441.497,0,-376.286	1/1:195:0,195:0:0:195:6917:-622.598,-58.7009,0	0/1:245:121,124:121:4168:124:4404:-322.781,0,-301.554	1/1:199:0,198:0:0:198:6994:-629.122,-59.6039,0	0/1:21:5,16:5:180:16:568:-45.1302,0,-10.2304	0/1:191:113,78:113:3880:78:2768:-191.863,0,-291.896	0/1:109:50,59:50:1718:59:2096:-156.098,0,-122.086	0/1:42:28,14:28:954:14:496:-32.331,0,-73.5222	0/1:228:123,104:123:4233:104:3705:-265.034,0,-312.538	1/1:118:1,117:1:36:117:4154:-370.444,-31.9233,0	0/1:35:12,23:12:428:23:824:-63.9473,0,-28.3228	1/1:34:0,34:0:0:34:1216:-109.747,-10.235,0	1/1:207:2,205:2:63:205:7298:-650.89,-56.3301,0	0/1:244:108,134:108:3659:134:4749:-354.512,0,-256.463	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:316:0,316:0:0:316:11223:-1009.96,-95.1255,0	1/1:256:3,253:3:108:253:8971:-797.302,-66.9885,0	1/1:126:7,119:7:252:119:4238:-358.572,-14.9008,0	0/1:150:86,63:86:2992:63:2232:-155.978,0,-224.346	0/1:310:147,162:147:5086:162:5770:-426.039,0,-364.481	1/1:154:3,151:3:95:151:5359:-473.58,-37.4944,0	0/1:95:45,50:45:1537:50:1780:-131.885,0,-110.021	1/1:161:0,161:0:0:161:5658:-509.304,-48.4658,0	0/1:246:131,114:131:4472:114:4017:-287.699,0,-328.635	0/1:36:23,13:23:783:13:468:-31.6226,0,-59.9445	1/1:163:0,163:0:0:163:5800:-522.115,-49.0679,0	1/1:126:0,126:0:0:126:4439:-399.682,-37.9298,0	0/1:339:201,138:201:6993:138:4883:-337.577,0,-527.397	1/1:316:0,316:0:0:316:11250:-1012.39,-95.1255,0	1/1:195:0,195:0:0:195:6905:-621.523,-58.7009,0	0/1:147:69,78:69:2412:78:2767:-205.019,0,-173.08	0/1:39:20,19:20:716:19:658:-47.8008,0,-53.0275	1/1:230:0,230:0:0:230:8105:-729.472,-69.2369,0	0/1:203:106,96:106:3637:96:3424:-247.316,0,-266.481	1/1:462:0,462:0:0:462:16361:-1472.16,-139.076,0	1/1:218:2,216:2:72:216:7644:-681.161,-58.7878,0	0/1:167:82,84:82:2794:84:2992:-219.281,0,-201.471	1/1:247:1,246:1:36:246:8650:-774.907,-70.7561,0	1/1:344:0,344:0:0:344:12147:-1093.09,-103.554,0	0/1:89:36,53:36:1248:53:1878:-142.506,0,-85.8272	1/1:197:2,195:2:72:195:6860:-610.606,-52.4662,0	0/1:160:81,79:81:2700:79:2812:-205.153,0,-195.082	0/1:117:51,66:51:1743:66:2335:-175.185,0,-121.93	0/1:235:103,131:103:3423:131:4576:-341.295,0,-237.577	0/1:150:93,57:93:3157:57:2025:-137.367,0,-239.202	1/1:174:0,174:0:0:174:6183:-556.57,-52.3792,0	1/1:283:4,279:4:140:279:9902:-878.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chr12	25339738	.	C	T	100772	PASS	AB=0.498492;ABP=3.18711;AC=48;AF=0.255319;AN=188;AO=4486;CIGAR=1X;DP=18123;DPB=18123;DPRA=1.06574;EPP=9744.24;EPPR=29543.7;GTI=0;LEN=1;MEANALT=1.22951;MQM=59.9817;MQMR=59.9868;NS=94;NUMALT=1;ODDS=14.9496;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=158498;QR=480077;RO=13608;RPL=2408;RPP=55.7239;RPPR=50.5816;RPR=2078;RUN=1;SAF=2408;SAP=55.7239;SAR=2078;SRF=6530;SRP=50.9308;SRR=7078;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:64:64,0:64:2221:0:0:0,-19.2659,-200.152	0/0:278:277,0:277:9779:0:0:0,-83.3853,-879.706	0/1:228:118,110:118:4140:110:3911:-283.548,0,-304.15	0/1:417:211,206:211:7473:206:7318:-533.147,0,-547.091	0/1:124:62,62:62:2167:62:2177:-158.866,0,-157.964	0/1:122:71,51:71:2504:51:1794:-125.016,0,-188.886	0/0:324:323,1:323:11447:1:27:0,-94.8339,-1027.42	0/1:307:152,155:152:5341:155:5435:-396.869,0,-388.412	0/1:183:77,105:77:2723:105:3706:-278.686,0,-190.253	0/0:183:181,1:181:6458:1:36:0,-51.549,-577.709	0/1:187:102,85:102:3590:85:2992:-213.22,0,-267.013	0/1:181:97,84:97:3431:84:2944:-210.708,0,-254.414	0/1:178:90,88:90:3163:88:3090:-224.745,0,-231.313	0/1:166:86,80:86:2982:80:2840:-205.869,0,-218.642	0/0:196:196,0:196:6865:0:0:0,-59.0019,-617.932	0/1:134:71,63:71:2471:63:2222:-159.906,0,-182.301	0/0:170:169,0:169:5918:0:0:0,-50.8741,-532.459	0/1:150:77,73:77:2708:73:2593:-188.465,0,-198.809	0/0:165:164,0:164:5774:0:0:0,-49.3689,-519.5	0/0:325:324,0:324:11446:0:0:0,-97.5337,-1029.76	0/1:278:146,131:146:5174:131:4618:-332.072,0,-382.087	0/0:119:119,0:119:4230:0:0:0,-35.8226,-380.877	0/0:170:169,0:169:5992:0:0:0,-50.8741,-539.177	0/1:225:87,138:87:3116:138:4920:-375.214,0,-212.935	0/0:152:152,0:152:5341:0:0:0,-45.7566,-480.826	0/1:593:313,280:313:11106:280:9937:-715.765,0,-820.928	0/0:530:528,1:528:18584:1:36:0,-155.951,-1668.62	0/0:90:90,0:90:3178:0:0:0,-27.0927,-286.243	0/1:499:229,269:229:8132:269:9586:-712.422,0,-581.627	0/1:158:76,82:76:2684:82:2902:-213.537,0,-194.242	0/1:223:106,117:106:3776:117:4137:-305.386,0,-272.911	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/0:18:18,0:18:644:0:0:0,-5.41854,-58.2906	0/1:26:12,14:12:428:14:496:-37.1475,0,-31.032	0/1:23:16,7:16:561:7:248:-15.7405,0,-43.8934	0/1:431:224,206:224:7836:206:7222:-520.243,0,-575.476	0/0:225:225,0:225:7958:0:0:0,-67.7317,-716.248	0/0:228:227,1:227:7985:1:36:0,-65.0366,-715.086	0/1:13:8,5:8:288:5:180:-12.6387,0,-22.354	0/0:263:263,0:263:9305:0:0:0,-79.1709,-837.426	0/0:117:115,1:115:4043:1:36:0,-31.6061,-360.535	0/0:218:217,1:217:7702:1:36:0,-62.0263,-689.621	0/0:198:197,0:197:6923:0:0:0,-59.3029,-622.789	0/0:164:164,0:164:5711:0:0:0,-49.3689,-514.122	0/1:176:100,76:100:3521:76:2699:-190.17,0,-264.119	0/0:240:240,0:240:8380:0:0:0,-72.2472,-754.183	0/1:317:162,153:162:5738:153:5385:-389.602,0,-421.354	0/0:199:198,0:198:6981:0:0:0,-59.6039,-628.151	0/1:247:124,122:124:4389:122:4307:-313.397,0,-320.771	0/0:192:192,0:192:6823:0:0:0,-57.7978,-614.143	0/1:20:15,5:15:540:5:180:-10.5315,0,-42.9159	0/1:191:79,112:79:2800:112:3981:-300.979,0,-194.742	0/1:110:59,51:59:2079:51:1828:-131.688,0,-154.264	0/1:42:15,27:15:536:27:968:-74.7941,0,-35.9316	0/1:228:106,121:106:3772:121:4252:-314.167,0,-270.985	0/0:119:117,1:117:4117:1:36:0,-32.2831,-367.116	0/1:36:24,12:24:856:12:432:-28.3841,0,-66.524	0/0:32:32,0:32:1131:0:0:0,-9.63296,-102.098	0/0:203:202,1:202:7167:1:36:0,-57.5108,-641.491	0/1:243:129,114:129:4544:114:3997:-286.773,0,-335.975	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/0:311:311,0:311:11026:0:0:0,-93.6203,-992.239	0/0:259:257,2:257:9111:2:72:0,-71.13,-813.135	0/0:129:123,6:123:4360:6:208:0,-19.7738,-373.515	0/1:147:65,82:65:2299:82:2883:-215.453,0,-162.917	0/1:299:161,138:161:5696:138:4896:-350.786,0,-422.754	0/0:156:152,4:152:5376:4:129:0,-35.033,-472.044	0/1:99:53,46:53:1861:46:1604:-114.845,0,-137.963	0/0:157:154,0:154:5425:0:0:0,-46.3586,-488.036	0/1:243:118,125:118:4152:125:4395:-322.579,0,-300.715	0/1:38:14,24:14:496:24:837:-64.2065,0,-33.5351	0/0:165:165,0:165:5859:0:0:0,-49.6699,-527.424	0/0:125:125,0:125:4480:0:0:0,-37.6287,-403.369	0/1:340:140,200:140:4936:200:7122:-538.69,0,-342.043	0/0:320:318,1:318:11301:1:36:0,-92.7502,-1013.42	0/0:193:193,0:193:6858:0:0:0,-58.0988,-617.292	0/1:150:84,66:84:2990:66:2322:-164.083,0,-224.177	0/1:41:21,20:21:740:20:704:-51.3423,0,-54.5811	0/0:237:237,0:237:8386:0:0:0,-71.3441,-754.756	0/1:205:98,107:98:3458:107:3789:-279.496,0,-249.722	0/0:463:461,0:461:16319:0:0:0,-138.775,-1468.09	0/0:220:220,0:220:7731:0:0:0,-66.2266,-695.821	0/1:169:86,83:86:2985:83:2904:-210.721,0,-218.008	0/0:243:242,0:242:8446:0:0:0,-72.8493,-759.875	0/0:334:333,0:333:11693:0:0:0,-100.243,-1051.99	0/1:90:49,41:49:1689:41:1443:-103.072,0,-125.201	0/0:189:188,0:188:6485:0:0:0,-56.5936,-583.535	0/1:157:82,75:82:2897:75:2632:-189.865,0,-213.705	0/1:119:66,53:66:2314:53:1872:-132.934,0,-172.67	0/1:239:136,103:136:4693:103:3642:-256.041,0,-350.584	0/1:142:55,87:55:1939:87:3036:-230.726,0,-132.04	0/0:173:173,0:173:6043:0:0:0,-52.0782,-543.985	0/0:282:279,2:279:9857:2:72: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chr12	25349990	.	AATC	GATC,GATT	231944	PASS	AB=0.483038,0.513193;ABP=16.27,11.0316;AC=140,48;AF=0.744681,0.255319;AN=188;AO=8066,2736;CIGAR=1X3M,1X2M1X;DP=10848;DPB=10849;DPRA=116.634,1.29878;EPP=17509.4,5926.8;EPPR=7.35324;GTI=2;LEN=1,4;MEANALT=2.05376,2.40351;MQM=59.9691,59.7515;MQMR=60;NS=94;NUMALT=2;ODDS=1.07934;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=72,72;PQR=0;PRO=0;QA=287929,96739;QR=72;RO=2;RPL=8065,2734;RPP=17509.4,5926.8;RPPR=7.35324;RPR=1,2;RUN=1,1;SAF=8066,2736;SAP=17518.1,5944.16;SAR=0,0;SRF=2;SRP=7.35324;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:34:0,33,0:0:0:33,0:1188,0:-106.927,-9.93399,0,-106.927,-9.93399,-106.927	1/1:128:0,128,0:0:0:128,0:4581,0:-412.453,-38.5318,0,-412.453,-38.5318,-412.453	1/2:126:0,77,49:0:0:77,49:2734,1723:-363.364,-140.596,-117.417,-223.121,0,-208.37	1/2:178:0,73,104:0:0:73,104:2579,3686:-510.343,-300.316,-278.341,-210.099,0,-178.792	1/2:108:0,44,64:0:0:44,64:1535,2272:-310.306,-185.466,-172.221,-125.19,0,-105.925	1/2:87:0,35,52:0:0:35,52:1260,1823:-251.506,-148.692,-138.156,-103.169,0,-87.5159	1/1:162:0,160,0:0:0:160,0:5704,0:-512.95,-48.1648,0,-512.95,-48.1648,-512.95	1/2:142:0,64,77:0:0:64,77:2291,2736:-409.765,-222.936,-203.67,-186.826,0,-163.646	1/2:120:0,64,56:0:0:64,56:2289,1950:-345.556,-158.905,-139.639,-187.004,0,-170.146	1/1:93:0,93,0:0:0:93,0:3315,0:-298.569,-27.9958,0,-298.569,-27.9958,-298.569	1/2:65:0,36,29:0:0:36,29:1292,1025:-189.221,-83.8298,-72.9927,-105.747,0,-97.0168	1/2:94:0,46,47:0:0:46,47:1652,1659:-269.848,-135.083,-121.236,-134.762,0,-120.613	1/2:109:0,55,54:0:0:55,54:1976,1941:-319.905,-158.706,-142.149,-161.558,0,-145.302	1/2:83:0,38,45:0:0:38,45:1349,1589:-239.653,-129.74,-118.301,-110.267,0,-96.7204	1/1:104:0,104,0:0:0:104,0:3680,0:-331.399,-31.3071,0,-331.399,-31.3071,-331.399	1/2:80:0,41,39:0:0:41,39:1472,1390:-233.717,-113.641,-101.299,-120.434,0,-108.694	1/1:91:0,91,0:0:0:91,0:3195,0:-287.77,-27.3937,0,-287.77,-27.3937,-287.77	1/2:79:0,45,34:0:0:45,34:1609,1220:-231.062,-99.8673,-86.3209,-131.552,0,-121.317	1/1:60:0,59,0:0:0:59,0:2108,0:-189.57,-17.7608,0,-189.57,-17.7608,-189.57	1/1:176:0,173,1:0:0:173,1:6187,36:-556.342,-52.0782,0,-553.404,-49.1175,-553.103	1/2:209:0,94,113:0:0:94,113:3368,3937:-594.907,-320.221,-291.924,-274.764,0,-240.747	1/1:106:0,106,0:0:0:106,0:3804,0:-342.557,-31.9092,0,-342.557,-31.9092,-342.557	1/1:93:0,92,0:0:0:92,0:3298,0:-296.758,-27.6948,0,-296.758,-27.6948,-296.758	1/2:125:0,63,61:0:0:63,61:2243,2145:-357.404,-174.59,-155.625,-182.809,0,-164.446	1/1:67:0,66,0:0:0:66,0:2353,0:-211.815,-19.868,0,-211.815,-19.868,-211.815	1/2:415:0,205,208:0:0:205,208:7296,7346:-1192.9,-598.277,-536.565,-594.678,0,-532.063	1/1:302:0,300,1:0:0:300,1:10727,36:-964.746,-90.309,0,-961.808,-87.3329,-961.507	1/1:59:0,58,0:0:0:58,0:2057,0:-185.148,-17.4597,0,-185.148,-17.4597,-185.148	1/2:409:0,207,201:0:0:207,201:7405,7113:-1183.13,-579.305,-516.992,-603.897,0,-543.39	1/2:127:0,56,71:0:0:56,71:1993,2520:-368.103,-205.674,-188.816,-162.784,0,-141.411	1/2:161:0,82,79:0:0:82,79:2929,2824:-469.417,-230.615,-205.931,-239.159,0,-215.377	1/2:7:0,2,5:0:0:2,5:72,172:-20.1916,-14.3123,-13.7102,-6.23466,0,-4.72951	1/1:25:0,25,0:0:0:25,0:870,0:-78.612,-7.52575,0,-78.612,-7.52575,-78.612	1/1:6:0,6,0:0:0:6,0:201,0:-18.417,-1.80618,0,-18.417,-1.80618,-18.417	1/2:5:0,1,4:0:0:1,4:36,133:-14.0362,-11.0933,-10.7922,-3.29724,0,-2.09312	1/2:11:0,3,8:0:0:3,8:108,288:-32.6691,-23.8568,-22.9537,-9.17208,0,-6.76384	1/2:254:0,118,134:0:0:118,134:4225,4687:-725.861,-381.307,-345.786,-344.587,0,-304.249	1/1:192:0,190,0:0:0:190,0:6783,0:-610.286,-57.1957,0,-610.286,-57.1957,-610.286	1/1:117:0,117,0:0:0:117,0:4155,0:-374.133,-35.2205,0,-374.133,-35.2205,-374.133	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:104:0,104,0:0:0:104,0:3744,0:-337.099,-31.3071,0,-337.099,-31.3071,-337.099	1/1:64:0,63,0:0:0:63,0:2264,0:-203.731,-18.9649,0,-203.731,-18.9649,-203.731	1/1:103:0,103,0:0:0:103,0:3689,0:-332.211,-31.0061,0,-332.211,-31.0061,-332.211	1/1:126:0,126,0:0:0:126,0:4501,0:-405.258,-37.9298,0,-405.258,-37.9298,-405.258	1/1:96:0,95,0:0:0:95,0:3370,0:-303.301,-28.5979,0,-303.301,-28.5979,-303.301	1/2:119:0,64,55:0:0:64,55:2288,1952:-345.948,-159.389,-140.123,-186.916,0,-170.359	1/1:117:0,117,0:0:0:117,0:4184,0:-376.74,-35.2205,0,-376.74,-35.2205,-376.74	1/2:208:0,96,110:0:0:96,110:3448,3858:-595.312,-314.033,-285.135,-281.391,0,-248.278	1/1:124:0,124,0:0:0:124,0:4414,0:-397.4,-37.3277,0,-397.4,-37.3277,-397.4	1/2:126:0,65,60:0:0:65,60:2325,2149:-364.947,-175.363,-155.796,-189.69,0,-171.628	1/1:160:0,159,1:0:0:159,1:5667,35:-509.797,-47.8638,0,-506.949,-44.6662,-506.648	1/2:9:0,8,1:0:0:8,1:288,36:-26.7966,-3.29724,-0.889005,-23.8592,0,-23.5581	1/2:151:0,90,61:0:0:90,61:3227,2155:-439.048,-175.845,-148.752,-263.558,0,-245.195	1/2:44:0,17,27:0:0:17,27:612,953:-127.878,-77.9387,-72.8212,-50.2959,0,-42.1681	1/2:16:0,7,8:0:0:7,8:252,287:-44.0085,-23.4441,-21.3369,-20.5969,0,-18.1887	1/2:162:0,69,93:0:0:69,93:2444,3301:-468.378,-269.29,-248.519,-199.442,0,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chr12	25350061	.	AATTTC	AGTTTG,AATTTG	319612	PASS	AB=0.489309,0.50699;ABP=10.2533,6.10679;AC=140,48;AF=0.744681,0.255319;AN=188;AO=11139,3711;CIGAR=1M1X3M1X,5M1X;DP=14922;DPB=14922.3;DPRA=0,1.07448;EPP=24026.3,7922.97;EPPR=5.18177;GTI=0;LEN=6,1;MEANALT=2.24468,2.60714;MQM=59.5238,59.8459;MQMR=60;NS=94;NUMALT=2;ODDS=1.36766;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=394531,133008;QR=36;RO=1;RPL=11120,3695;RPP=24026.3,7922.97;RPPR=5.18177;RPR=19,16;RUN=1,1;SAF=0,0;SAP=24191,8061.34;SAR=11139,3711;SRF=0;SRP=5.18177;SRR=1;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:80:0,80,0:0:0:80,0:2843,0:-256.081,-24.0824,0,-256.081,-24.0824,-256.081	1/1:274:0,273,0:0:0:273,0:9693,0:-871.796,-82.1812,0,-871.796,-82.1812,-871.796	1/2:286:0,156,130:0:0:156,130:5499,4671:-828.852,-381.199,-334.238,-448.009,0,-408.875	1/2:451:0,217,234:0:0:217,234:7669,8388:-1308.77,-684.421,-619.098,-624.699,0,-554.258	1/2:143:0,56,86:0:0:56,86:1978,3096:-413.686,-252.617,-235.759,-161.066,0,-135.177	1/2:74:0,37,37:0:0:37,37:1318,1328:-216.086,-108.684,-97.546,-107.76,0,-96.6216	1/1:272:0,271,0:0:0:271,0:9578,0:-861.027,-81.5791,0,-861.027,-81.5791,-861.027	1/2:249:0,138,111:0:0:138,111:4892,3975:-721.987,-323.993,-282.451,-398.35,0,-364.936	1/2:129:0,57,71:0:0:57,71:2026,2556:-373.623,-208.549,-191.39,-165.072,0,-143.699	1/1:169:0,169,0:0:0:169,0:5953,0:-535.826,-50.8741,0,-535.826,-50.8741,-535.826	1/2:91:0,54,37:0:0:54,37:1916,1328:-264.585,-108.684,-92.4285,-156.258,0,-145.12	1/2:81:0,31,48:0:0:31,48:1096,1716:-228.512,-139.915,-130.583,-88.5929,0,-74.1435	1/2:84:0,36,48:0:0:36,48:1274,1724:-244.423,-140.799,-129.962,-103.98,0,-89.5306	1/2:80:0,35,45:0:0:35,45:1231,1601:-230.364,-130.402,-119.866,-100.314,0,-86.7678	1/1:80:0,80,0:0:0:80,0:2819,0:-253.94,-24.0824,0,-253.94,-24.0824,-253.94	1/2:71:0,45,25:0:0:45,25:1591,900:-202.98,-73.4178,-59.8715,-129.56,0,-122.034	1/1:81:0,81,0:0:0:81,0:2887,0:-260.067,-24.3834,0,-260.067,-24.3834,-260.067	1/2:87:0,49,37:0:0:49,37:1754,1328:-251.313,-108.324,-93.5739,-142.988,0,-131.849	1/1:42:0,42,0:0:0:42,0:1495,0:-134.577,-12.6433,0,-134.577,-12.6433,-134.577	1/1:376:0,372,1:0:0:372,1:13185,36:-1185.69,-111.983,0,-1182.75,-109.026,-1182.45	1/2:250:0,126,123:0:0:126,123:4453,4404:-721.723,-359.1,-321.17,-362.619,0,-325.592	1/1:202:0,202,0:0:0:202,0:7140,0:-642.274,-60.8081,0,-642.274,-60.8081,-642.274	1/1:178:0,176,0:0:0:176,0:6209,0:-558.432,-52.9813,0,-558.432,-52.9813,-558.432	1/2:200:0,88,112:0:0:88,112:3107,4007:-579.923,-327.103,-300.613,-253.174,0,-219.459	1/1:99:0,99,0:0:0:99,0:3500,0:-315.178,-29.802,0,-315.178,-29.802,-315.178	1/2:493:0,227,264:0:0:227,264:8005,9441:-1421.09,-769.831,-701.497,-651.313,0,-571.841	1/1:408:0,407,0:0:0:407,0:14425,0:-1295.76,-122.519,0,-1295.76,-122.519,-1295.76	1/1:46:0,46,0:0:0:46,0:1643,0:-148.158,-13.8474,0,-148.158,-13.8474,-148.158	1/2:531:0,267,264:0:0:267,264:9472,9436:-1541.36,-769.655,-689.28,-772.063,0,-692.591	1/2:192:0,84,106:0:0:84,106:2983,3800:-553.066,-310.031,-284.745,-243.132,0,-211.223	1/2:201:0,98,103:0:0:98,103:3469,3691:-583.891,-301.374,-271.873,-282.872,0,-251.866	1/2:16:0,8,8:0:0:8,8:288,279:-46.538,-23.033,-20.6248,-23.8592,0,-21.4509	1/1:33:0,33,0:0:0:33,0:1166,0:-105.247,-9.93399,0,-105.247,-9.93399,-105.247	1/1:2:0,2,0:0:0:2,0:72,0:-6.83672,-0.60206,0,-6.83672,-0.60206,-6.83672	1/2:23:0,11,12:0:0:11,12:388,432:-67.0657,-35.6088,-32.2975,-31.8122,0,-28.1999	1/2:15:0,3,12:0:0:3,12:107,428:-43.9684,-35.2458,-34.3427,-9.07908,0,-5.46672	1/2:259:0,136,121:0:0:136,121:4832,4348:-748.471,-354.744,-313.804,-393.763,0,-357.339	1/1:274:0,274,0:0:0:274,0:9732,0:-874.524,-82.4822,0,-874.524,-82.4822,-874.524	1/1:71:0,70,0:0:0:70,0:2500,0:-224.88,-21.0721,0,-224.88,-21.0721,-224.88	1/2:3:0,1,2:0:0:1,2:35,72:-9.07529,-6.23466,-5.93363,-3.19354,0,-2.59148	1/1:275:0,273,2:0:0:273,2:9603,72:-863.749,-82.1812,0,-857.874,-75.9465,-857.272	1/1:53:0,48,1:0:0:48,1:1713,36:-154.085,-14.4494,0,-151.147,-11.51,-150.846	1/1:221:0,221,0:0:0:221,0:7779,0:-700.098,-66.5276,0,-700.098,-66.5276,-700.098	1/1:104:0,104,0:0:0:104,0:3692,0:-332.477,-31.3071,0,-332.477,-31.3071,-332.477	1/1:78:0,77,0:0:0:77,0:2744,0:-246.838,-23.1793,0,-246.838,-23.1793,-246.838	1/2:173:0,80,89:0:0:80,89:2853,3196:-493.259,-260.717,-236.635,-232.545,0,-205.754	1/1:218:0,215,0:0:0:215,0:7604,0:-683.562,-64.7215,0,-683.562,-64.7215,-683.562	1/2:353:0,148,205:0:0:148,205:5224,7327:-1022.85,-597.475,-552.922,-425.726,0,-364.015	1/1:152:0,152,0:0:0:152,0:5397,0:-485.846,-45.7566,0,-485.846,-45.7566,-485.846	1/2:233:0,112,121:0:0:112,121:3971,4348:-678.49,-354.999,-321.284,-323.848,0,-287.423	1/1:280:0,279,0:0:0:279,0:9908,0:-891.37,-83.9874,0,-891.37,-83.9874,-891.37	1/2:13:0,4,8:0:0:4,8:143,288:-35.2048,-23.5439,-22.3398,-11.6981,0,-9.28984	1/2:261:0,128,133:0:0:128,133:4583,4775:-763.474,-389.818,-351.286,-374.014,0,-333.977	1/2:49:0,26,23:0:0:26,23:927,819:-142.659,-67.1079,-59.2811,-75.907,0,-68.9833	1/2:22:0,16,6:0:0:16,6:565,216:-63.9821,-17.9843,-13.1679,-46.3557,0,-44.5495	1/2:231:0,112,118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chr12	25360745	.	T	A	20330.9	PASS	AB=0.524172;ABP=14.3478;AC=48;AF=0.258065;AN=186;AO=1181;CIGAR=1X;DP=4347;DPB=4347;DPRA=0.96202;EPP=2515.67;EPPR=6786.96;GTI=2;LEN=1;MEANALT=1.03846;MQM=59.9992;MQMR=59.981;NS=93;NUMALT=1;ODDS=0.76465;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42331;QR=113258;RO=3164;RPL=1175;RPP=2515.67;RPPR=6786.96;RPR=6;RUN=1;SAF=0;SAP=2567.52;SAR=1181;SRF=0;SRP=6873.55;SRR=3164;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.588	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/1:52:27,25:27:972:25:894:-65.1262,0,-72.1443	0/1:66:37,29:37:1332:29:1032:-73.3249,0,-100.314	0/1:45:21,24:21:756:24:860:-64.1755,0,-54.8209	0/1:30:10,20:10:345:20:720:-56.0979,0,-22.3499	0/0:67:67,0:67:2399:0:0:0,-20.169,-216.166	0/1:79:32,46:32:1152:46:1656:-125.488,0,-80.15	0/1:38:13,25:13:464:25:887:-68.709,0,-30.6584	0/0:47:47,0:47:1684:0:0:0,-14.1484,-151.847	0/1:44:23,21:23:828:21:752:-54.7609,0,-61.5988	0/1:41:22,18:22:792:18:643:-45.7993,0,-59.2046	0/1:37:16,21:16:576:21:752:-56.8681,0,-41.0369	0/1:53:25,28:25:885:28:1008:-75.0818,0,-64.0119	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.5595	0/1:25:12,13:12:432:13:468:-34.9339,0,-31.6954	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:24:9,15:9:324:15:540:-41.7118,0,-22.2811	0/0:19:19,0:19:680:0:0:0,-5.71957,-61.5292	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/1:47:19,28:19:684:28:978:-74.1803,0,-47.7419	0/0:41:41,0:41:1472:0:0:0,-12.3422,-132.776	0/0:54:54,0:54:1906:0:0:0,-16.2556,-171.814	0/1:72:30,42:30:1065:42:1512:-114.7,0,-74.4856	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/1:191:102,89:102:3634:89:3196:-230.366,0,-269.766	0/0:101:101,0:101:3617:0:0:0,-30.404,-325.734	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/1:111:50,61:50:1796:61:2188:-163.771,0,-128.508	0/1:49:25,24:25:885:24:864:-63.3321,0,-65.2145	0/1:60:29,31:29:1044:31:1116:-82.6899,0,-76.213	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:14:13,1:13:468:1:36:0,-0.616145,-38.8614	.:.:.:.:.:.:.:.	0/1:5:2,3:2:72:3:108:-8.57002,0,-5.33157	0/1:10:1,9:1:36:9:320:-26.1321,0,-0.587975	0/1:99:50,49:50:1800:49:1756:-128.522,0,-132.48	0/0:72:72,0:72:2577:0:0:0,-21.6742,-232.177	0/0:29:29,0:29:1044:0:0:0,-8.72987,-94.2748	1/1:4:0,4:0:0:4:140:-12.9446,-1.20412,0	0/0:38:38,0:38:1364:0:0:0,-11.4391,-123.061	0/0:26:25,1:25:900:1:21:0,-5.72683,-79.2211	0/0:66:66,0:66:2376:0:0:0,-19.868,-214.097	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.613	0/1:65:24,41:24:826:41:1476:-113.569,0,-55.0847	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:77:34,43:34:1224:43:1540:-115.714,0,-87.2877	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.835	0/1:42:19,23:19:684:23:828:-62.2009,0,-49.2471	0/0:81:81,0:81:2886:0:0:0,-24.3834,-259.973	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:61:29,32:29:1044:32:1152:-85.6273,0,-75.912	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:74:32,42:32:1148:42:1504:-113.378,0,-81.3536	0/0:14:13,1:13:464:1:36:0,-0.616145,-38.4937	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.7028	0/0:17:17,0:17:612:0:0:0,-5.11751,-55.4134	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:95:52,43:52:1853:43:1544:-110.655,0,-138.45	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:67:67,0:67:2393:0:0:0,-20.169,-215.625	0/0:118:118,0:118:4218:0:0:0,-35.5215,-379.667	0/1:29:26,3:26:936:3:108:-1.3453,0,-75.8296	0/1:37:18,19:18:648:19:684:-50.7522,0,-47.5138	0/1:63:31,32:31:1112:32:1152:-85.0253,0,-81.4265	0/0:81:81,0:81:2856:0:0:0,-24.3834,-257.272	0/1:16:6,10:6:216:10:360:-27.9278,0,-14.974	0/0:37:36,1:36:1292:1:36:0,-7.53983,-112.985	0/1:76:43,33:43:1548:33:1173:-82.9973,0,-116.735	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	0/0:37:37,0:37:1332:0:0:0,-11.1381,-120.182	0/0:29:29,0:29:1029:0:0:0,-8.72987,-92.9211	0/1:85:36,49:36:1288:49:1764:-133.456,0,-90.636	0/0:54:54,0:54:1936:0:0:0,-16.2556,-174.516	0/0:65:65,0:65:2321:0:0:0,-19.5669,-209.148	0/1:21:12,9:12:432:9:324:-23.1842,0,-32.8996	0/1:11:1,10:1:36:10:360:-29.433,0,-0.286945	0/0:23:23,0:23:828:0:0:0,-6.92369,-74.8441	0/1:49:31,18:31:1116:18:639:-43.0877,0,-86.0012	0/0:122:122,0:122:4369:0:0:0,-36.7257,-393.382	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:30:14,16:14:504:16:576:-43.1441,0,-36.6672	0/0:42:42,0:42:1482:0:0:0,-12.6433,-133.67	0/0:60:58,2:58:2054:2:72:0,-11.2251,-178.291	0/1:27:15,12:15:540:12:428:-30.731,0,-40.8087	0/0:42:42,0:42:1512:0:0:0,-12.6433,-136.375	0/1:29:15,14:15:532:14:504:-36.9682,0,-39.4832	0/1:42:9,33:9:324:33:1184:-94.2251,0,-16.8626	0/1:61:26,35:26:936:35:1256:-94.9825,0,-66.1966	0/1:28:12,16:12:432:16:572:-43.3846,0,-30.7924	0/0:53:53,0:53:1908:0:0:0,-15.9546,-171.998	0/0:44:44,0:44:1584:0:0:0,-13.2453,-142.852
chr12	25360763	.	C	T	63635.6	PASS	AB=0.473519;ABP=16.581;AC=138;AF=0.741935;AN=186;AO=3136;CIGAR=1X;DP=4318;DPB=4318;DPRA=11.7228;EPP=6812.75;EPPR=2563.18;GTI=2;LEN=1;MEANALT=1.03261;MQM=59.979;MQMR=59.9992;NS=93;NUMALT=1;ODDS=0.585439;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=110271;QR=42133;RO=1179;RPL=3136;RPP=6812.75;RPPR=2563.18;RPR=0;RUN=1;SAF=0;SAP=6812.75;SAR=3136;SRF=0;SRP=2563.18;SRR=1179;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:21:0,21:0:0:21:714:-64.5725,-6.32163,0	1/1:41:0,41:0:0:41:1422:-128.272,-12.3422,0	0/1:51:25,26:25:884:26:905:-66.4103,0,-64.5258	0/1:66:29,37:29:1040:37:1308:-98.1535,0,-74.0464	0/1:41:22,19:22:773:19:668:-48.1034,0,-57.5473	0/1:29:20,9:20:712:9:309:-19.4108,0,-55.6768	1/1:65:0,65:0:0:65:2316:-208.701,-19.567,0	0/1:79:47,32:47:1665:32:1132:-78.4072,0,-126.354	0/1:38:25,13:25:900:13:453:-29.6605,0,-69.8819	1/1:47:0,47:0:0:47:1649:-148.696,-14.1484,0	0/1:45:22,23:22:780:23:824:-60.937,0,-56.9767	0/1:42:19,23:19:684:23:812:-60.7577,0,-49.2471	0/1:36:21,15:21:756:15:521:-36.3792,0,-57.5301	0/1:53:28,25:28:1008:25:900:-65.3664,0,-75.0818	1/1:26:0,26:0:0:26:928:-83.8383,-7.82678,0	0/1:26:13,13:13:468:13:464:-34.2707,0,-34.6329	1/1:37:0,37:0:0:37:1328:-119.822,-11.1381,0	0/1:24:15,9:15:532:9:324:-22.2811,0,-40.9884	1/1:19:0,19:0:0:19:676:-61.168,-5.71957,0	1/1:59:0,59:0:0:59:2018:-181.883,-17.7608,0	0/1:47:28,19:28:978:19:649:-44.5797,0,-74.1803	1/1:40:0,40:0:0:40:1424:-128.457,-12.0412,0	1/1:54:0,54:0:0:54:1863:-167.944,-16.2556,0	0/1:71:41,30:41:1464:30:1060:-74.3381,0,-110.683	1/1:37:0,37:0:0:37:1324:-119.462,-11.1381,0	0/1:189:86,102:86:3073:102:3621:-269.143,0,-219.844	1/1:100:0,100:0:0:100:3468:-312.334,-30.103,0	1/1:24:0,24:0:0:24:841:-76.0064,-7.22472,0	0/1:109:60,49:60:2137:49:1706:-121.009,0,-159.784	0/1:49:24,25:24:860:25:888:-65.487,0,-62.9714	0/1:61:30,31:30:1080:31:1100:-80.9475,0,-79.1504	1/1:4:0,4:0:0:4:125:-11.5586,-1.20412,0	1/1:13:1,12:1:36:12:412:-33.811,-0.315115,0	.:.:.:.:.:.:.:.	0/1:5:3,2:3:104:2:68:-4.95256,0,-8.19766	0/1:10:9,1:9:324:1:32:-0.189013,0,-26.4956	0/1:98:49,49:49:1756:49:1726:-126.12,0,-128.823	1/1:71:0,71:0:0:71:2474:-222.913,-21.3731,0	1/1:29:0,29:0:0:29:1032:-93.1929,-8.72987,0	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	1/1:39:0,39:0:0:39:1358:-122.513,-11.7402,0	1/1:26:0,26:0:0:26:922:-83.2971,-7.82678,0	1/1:66:0,66:0:0:66:2341:-210.948,-19.868,0	1/1:25:0,25:0:0:25:900:-81.321,-7.52575,0	1/1:43:0,43:0:0:43:1505:-135.741,-12.9443,0	0/1:64:41,23:41:1472:23:820:-54.8566,0,-113.51	1/1:63:0,63:0:0:63:2252:-202.943,-18.9649,0	0/1:78:43,35:43:1548:35:1240:-88.4241,0,-116.133	1/1:62:0,62:0:0:62:2162:-194.845,-18.6639,0	0/1:41:23,18:23:828:18:633:-44.9528,0,-62.5019	1/1:79:0,79:0:0:79:2758:-248.462,-23.7814,0	0/1:3:1,2:1:36:2:68:-5.55462,0,-2.69518	0/1:61:33,28:33:1188:28:988:-70.8711,0,-88.8658	0/1:15:7,8:7:252:8:284:-21.3879,0,-18.5135	0/1:6:3,3:3:108:3:104:-7.89663,0,-8.26899	0/1:76:43,33:43:1540:33:1115:-77.7693,0,-116.015	1/1:14:1,13:1:36:13:445:-36.7768,-0.616145,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:16:0,16:0:0:16:561:-50.8171,-4.81648,0	1/1:36:0,36:0:0:36:1238:-111.717,-10.8371,0	0/1:96:44,52:44:1572:52:1850:-137.881,0,-112.873	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:66:0,66:0:0:66:2336:-210.501,-19.868,0	1/1:116:0,116:0:0:116:4056:-364.21,-34.9195,0	0/1:28:3,25:3:108:25:876:-70.7282,0,-1.64633	0/1:39:20,19:20:701:19:680:-49.789,0,-51.6716	0/1:62:31,31:31:1112:31:1077:-78.5724,0,-81.7275	1/1:81:0,81:0:0:81:2845:-256.29,-24.3834,0	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	1/1:35:1,34:1:36:34:1181:-102.994,-6.93778,0	0/1:76:33,43:33:1180:43:1528:-114.935,0,-83.6298	0/1:14:7,7:7:252:7:237:-17.4446,0,-18.8145	1/1:35:0,35:0:0:35:1203:-108.567,-10.5361,0	1/1:30:0,30:0:0:30:1045:-94.3578,-9.0309,0	0/1:84:48,36:48:1712:36:1284:-90.5769,0,-129.079	1/1:54:0,54:0:0:54:1895:-170.826,-16.2556,0	1/1:62:0,62:0:0:62:2193:-197.634,-18.6639,0	0/1:22:10,12:10:360:12:409:-30.5128,0,-26.1216	0/1:11:10,1:10:360:1:36:-0.286945,0,-29.433	1/1:22:0,22:0:0:22:776:-70.1622,-6.62266,0	0/1:49:18,31:18:648:31:1085:-83.2065,0,-43.901	1/1:120:0,120:0:0:120:4211:-379.174,-36.1236,0	1/1:64:0,64:0:0:64:2296:-206.901,-19.2659,0	0/1:30:16,14:16:576:14:496:-35.9434,0,-43.1441	1/1:42:0,42:0:0:42:1481:-133.582,-12.6433,0	1/1:60:2,58:2:72:58:2072:-179.914,-11.2251,0	0/1:27:12,15:12:432:15:532:-40.0853,0,-31.0934	1/1:42:0,42:0:0:42:1500:-135.295,-12.6433,0	0/1:29:14,14:14:504:14:504:-36.9094,0,-36.9094	0/1:42:33,9:33:1184:9:324:-16.8626,0,-94.2251	0/1:63:36,26:36:1277:26:917:-63.8212,0,-96.2076	0/1:27:15,12:15:540:12:428:-30.731,0,-40.8087	1/1:53:0,53:0:0:53:1816:-163.714,-15.9546,0	1/1:44:0,44:0:0:44:1564:-141.052,-13.2453,0
chr12	25377090	.	AACGCTAT	AACGTTAT,CACGTTAT	132913	PASS	AB=0.367341,0.630229;ABP=569.345,548.794;AC=139,49;AF=0.739362,0.260638;AN=188;AO=4021,2351;CIGAR=4M1X3M,1X3M1X3M;DP=6406;DPB=6405.88;DPRA=26.3654,1.56271;EPP=8734.5,5108.14;EPPR=5.18177;GTI=10;LEN=1,8;MEANALT=1.82418,2.17647;MQM=59.7585,59.8001;MQMR=60;NS=94;NUMALT=2;ODDS=9258.32;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=143342,82070;QR=36;RO=1;RPL=0,0;RPP=8734.5,5108.14;RPPR=5.18177;RPR=4021,2351;RUN=1,1;SAF=0,0;SAP=8734.5,5108.14;SAR=4021,2351;SRF=0;SRP=5.18177;SRR=1;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25,0:0:0:25,0:896,0:-80.9522,-7.52575,0,-80.9522,-7.52575,-80.9522	1/1:45:0,45,0:0:0:45,0:1616,0:-145.722,-13.5464,0,-145.722,-13.5464,-145.722	1/2:139:0,27,112:0:0:27,112:957,3920:-397.238,-319.275,-311.148,-78.3161,0,-44.6007	1/2:283:0,96,187:0:0:96,187:3444,6544:-813.445,-532.569,-503.67,-281.232,0,-224.939	1/1:5:0,5,0:0:0:5,0:165,0:-15.1736,-1.50515,0,-15.1736,-1.50515,-15.1736	1/1:3:0,3,0:0:0:3,0:108,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752	1/1:76:0,71,0:0:0:71,0:2522,0:-226.874,-21.3731,0,-226.874,-21.3731,-226.874	1/2:104:0,37,67:0:0:37,67:1302,2329:-295.335,-189.701,-178.563,-105.984,0,-85.815	1/2:94:0,35,59:0:0:35,59:1228,2073:-269.003,-169.069,-158.533,-100.285,0,-82.5243	1/1:62:0,61,0:0:0:61,0:2196,0:-197.545,-18.3628,0,-197.545,-18.3628,-197.545	1/2:28:0,15,13:0:0:15,13:525,437:-78.1863,-35.4649,-30.9494,-43.0626,0,-39.1492	1/2:94:1,43,49:1:36:43,49:1544,1729:-263.542,-137.898,-127.891,-123.056,0,-111.243	1/2:65:0,30,35:0:0:30,35:1068,1245:-188.832,-101.795,-92.7642,-87.393,0,-76.8569	1/2:54:0,36,18:0:0:36,18:1284,625:-155.629,-51.1269,-40.2898,-104.852,0,-99.4331	1/1:97:0,97,0:0:0:97,0:3484,0:-313.77,-29.1999,0,-313.77,-29.1999,-313.77	1/2:57:0,31,26:0:0:31,26:1104,899:-163.384,-73.3958,-64.0639,-90.3387,0,-82.5119	1/1:21:0,21,0:0:0:21,0:733,0:-66.2733,-6.32163,0,-66.2733,-6.32163,-66.2733	1/2:38:0,16,22:0:0:16,22:576,769:-109.902,-62.9067,-58.0902,-47.3503,0,-40.7276	1/1:26:0,26,0:0:0:26,0:924,0:-83.4639,-7.82678,0,-83.4639,-7.82678,-83.4639	1/1:84:0,83,0:0:0:83,0:2988,0:-268.767,-24.9855,0,-268.767,-24.9855,-268.767	1/2:194:0,40,153:0:0:40,153:1436,5320:-549.663,-432.523,-420.482,-117.137,0,-71.0791	1/1:40:0,40,0:0:0:40,0:1432,0:-129.164,-12.0412,0,-129.164,-12.0412,-129.164	1/1:65:0,65,0:0:0:65,0:2316,0:-208.417,-19.567,0,-208.417,-19.567,-208.417	1/2:76:0,31,45:0:0:31,45:1093,1593:-219.096,-130.112,-120.78,-89.3365,0,-75.7902	1/1:33:0,32,0:0:0:32,0:1129,0:-101.544,-9.63296,0,-101.544,-9.63296,-101.544	1/2:150:0,41,109:0:0:41,109:1449,3730:-421.092,-303.09,-290.748,-118.352,0,-85.5402	1/1:158:0,158,0:0:0:158,0:5660,0:-509.497,-47.5627,0,-509.497,-47.5627,-509.497	1/1:36:0,36,0:0:0:36,0:1284,0:-115.859,-10.8371,0,-115.859,-10.8371,-115.859	1/2:284:0,91,193:0:0:91,193:3256,6818:-821.102,-555.6,-528.206,-265.858,0,-207.759	1/2:103:0,33,70:0:0:33,70:1180,2438:-294.816,-198.601,-188.667,-96.5694,0,-75.4973	1/2:114:0,21,93:0:0:21,93:748,3259:-326.494,-265.531,-259.21,-61.3175,0,-33.3217	2/2:4:0,0,4:0:0:0,4:0,144:-13.3136,-13.3136,-13.3136,-1.20412,-1.20412,0	1/1:7:0,7,0:0:0:7,0:252,0:-23.029,-2.10721,0,-23.029,-2.10721,-23.029	1/1:3:0,3,0:0:0:3,0:104,0:-9.7028,-0.90309,0,-9.7028,-0.90309,-9.7028	1/2:7:0,2,5:0:0:2,5:72,180:-20.9217,-15.0469,-14.4449,-6.23466,0,-4.72951	1/2:7:0,3,4:0:0:3,4:108,142:-20.694,-11.9252,-11.0221,-9.12564,0,-7.92152	1/2:169:0,79,88:0:0:79,88:2808,3049:-476.618,-247.855,-224.074,-228.822,0,-202.331	1/1:62:0,62,0:0:0:62,0:2224,0:-200.407,-18.6639,0,-200.407,-18.6639,-200.407	1/1:41:0,41,0:0:0:41,0:1468,0:-132.392,-12.3422,0,-132.392,-12.3422,-132.392	2/2:1:0,0,1:0:0:0,1:0,36:-3.59827,-3.59827,-3.59827,-0.30103,-0.30103,0	1/1:71:0,70,0:0:0:70,0:2493,0:-224.341,-21.0721,0,-224.341,-21.0721,-224.341	1/1:27:0,26,0:0:0:26,0:920,0:-82.7579,-7.82678,0,-82.7579,-7.82678,-82.7579	1/1:81:0,81,0:0:0:81,0:2842,0:-256.011,-24.3834,0,-256.011,-24.3834,-256.011	1/1:38:0,38,0:0:0:38,0:1349,0:-121.708,-11.4391,0,-121.708,-11.4391,-121.708	1/1:75:0,75,0:0:0:75,0:2651,0:-238.829,-22.5773,0,-238.829,-22.5773,-238.829	1/2:62:0,31,31:0:0:31,31:1089,1085:-177.26,-88.6255,-79.2936,-88.9854,0,-79.6534	1/1:54:0,54,0:0:0:54,0:1936,0:-174.492,-16.2556,0,-174.492,-16.2556,-174.492	1/2:176:0,48,127:0:0:48,127:1728,4423:-500.767,-359.768,-345.318,-141.133,0,-102.902	1/1:57:0,57,0:0:0:57,0:2039,0:-183.77,-17.1587,0,-183.77,-17.1587,-183.77	1/2:119:0,38,80:0:0:38,80:1360,2788:-337.62,-226.737,-215.298,-110.908,0,-86.8254	1/1:53:0,52,0:0:0:52,0:1864,0:-167.758,-15.6536,0,-167.758,-15.6536,-167.758	2/2:3:0,0,3:0:0:0,3:0,102:-9.51638,-9.51638,-9.51638,-0.90309,-0.90309,0	1/2:59:0,22,37:0:0:22,37:788,1294:-169.888,-105.62,-98.9977,-64.6221,0,-53.484	1/2:54:0,17,37:0:0:17,37:608,1263:-152.41,-102.828,-97.7102,-49.9345,0,-38.7964	1/2:7:0,6,1:0:0:6,1:216,35:-20.8306,-3.1976,-1.39142,-17.9843,0,-17.6833	1/2:117:0,44,72:0:0:44,72:1572,2509:-332.303,-204.135,-190.89,-128.269,0,-106.595	1/1:37:0,37,0:0:0:37,0:1320,0:-119.102,-11.1381,0,-119.102,-11.1381,-119.102	1/2:7:0,4,3:0:0:4,3:144,106:-20.7395,-8.98601,-7.78189,-12.1095,0,-11.2064	1/1:9:0,9,0:0:0:9,0:320,0:-29.1424,-2.70927,0,-29.1424,-2.70927,-29.1424	1/1:64:0,62,0:0:0:62,0:2224,0:-200.047,-18.6639,0,-200.047,-18.6639,-200.047	1/2:90:0,46,44:0:0:46,44:1633,1542:-258.877,-125.826,-111.979,-133.403,0,-120.158	1/1:4:0,4,0:0:0:4,0:144,0:-13.3136,-1.20412,0,-13.3136,-1.20412,-13.3136	1/1:102:0,101,0:0:0:101,0:3600,0:-323.94,-30.404,0,-323.94,-30.404,-323.94	1/1:103:0,98,3:0:0:98,3:3511,106:-315.837,-29.5009,0,-307.21,-20.8774,-306.307	1/1:55:0,54,0:0:0:54,0:1917,0:-172.549,-16.2556,0,-172.549,-16.2556,-172.549	1/2:76:0,32,44:0:0:32,44:1144,1517:-216.849,-123.57,-113.937,-93.6304,0,-80.3851	1/2:180:0,61,119:0:0:61,119:2150,4158:-513.623,-338.579,-320.216,-175.395,0,-139.573	1/1:80:0,78,1:0:0:78,1:2746,36:-247.069,-23.4803,0,-244.131,-20.488,-243.83	1/2:25:0,17,8:0:0:17,8:604,282:-72.5327,-23.3128,-18.1953,-49.5731,0,-47.1649	1/1:27:0,27,0:0:0:27,0:964,0:-87.0768,-8.12781,0,-87.0768,-8.12781,-87.0768	1/2:30:0,16,14:0:0:16,14:568,500:-87.3968,-41.122,-36.3056,-46.6308,0,-42.4163	1/2:13:0,2,11:0:0:2,11:72,374:-36.5533,-30.6754,-30.0733,-6.23466,0,-2.92333	1/1:66:0,63,0:0:0:63,0:2239,0:-201.433,-18.9649,0,-201.433,-18.9649,-201.433	1/1:72:0,71,0:0:0:71,0:2540,0:-228.469,-21.3731,0,-228.469,-21.3731,-228.469	1/2:129:0,47,81:0:0:47,81:1665,2801:-363.014,-227.653,-213.505,-135.42,0,-111.036	1/1:70:0,70,0:0:0:70,0:2516,0:-226.685,-21.0721,0,-226.685,-21.0721,-226.685	1/1:31:0,29,2:0:0:29,2:1025,72:-92.1931,-8.72987,0,-86.3179,-2.49521,-85.7158	1/2:90:0,37,53:0:0:37,53:1305,1823:-254.609,-148.391,-137.253,-106.566,0,-90.6118	1/2:9:0,1,8:0:0:1,8:36,288:-26.7966,-23.8592,-23.5581,-3.29724,0,-0.889005	1/1:46:0,46,0:0:0:46,0:1641,0:-147.972,-13.8474,0,-147.972,-13.8474,-147.972	1/2:76:0,13,63:0:0:13,63:464,2226:-219.468,-181.64,-177.727,-38.1841,0,-19.2192	1/1:111:0,111,0:0:0:111,0:3961,0:-356.658,-33.4143,0,-356.658,-33.4143,-356.658	1/1:39:0,39,0:0:0:39,0:1381,0:-124.574,-11.7402,0,-124.574,-11.7402,-124.574	1/2:71:0,34,37:0:0:34,37:1220,1292:-204.948,-105.441,-95.2055,-99.861,0,-88.7229	1/1:51:0,51,0:0:0:51,0:1824,0:-164.439,-15.3525,0,-164.439,-15.3525,-164.439	1/1:113:0,112,1:0:0:112,1:3992,36:-359.071,-33.7154,0,-356.133,-30.4181,-355.832	1/2:30:0,20,10:0:0:20,10:716,357:-87.8355,-29.4619,-23.4413,-58.7307,0,-55.7204	1/1:66:0,65,0:0:0:65,0:2313,0:-208.061,-19.567,0,-208.061,-19.567,-208.061	1/2:62:0,32,30:0:0:32,30:1136,1048:-178.153,-85.5973,-75.9643,-92.9078,0,-83.8769	1/2:27:0,17,10:0:0:17,10:612,354:-79.1293,-29.1894,-24.0719,-50.2959,0,-47.2856	1/2:57:0,34,23:0:0:34,23:1197,808:-163.547,-66.1142,-55.8792,-97.7845,0,-90.8608	1/2:79:0,35,44:0:0:35,44:1256,1530:-227.197,-124.742,-114.206,-102.809,0,-89.5639	1/1:81:0,81,0:0:0:81,0:2893,0:-260.592,-24.3834,0,-260.592,-24.3834,-260.592	1/1:121:0,118,1:0:0:118,1:4211,36:-378.854,-35.5215,0,-375.917,-32.559,-375.616
chr12	25377120	.	TCTTC	TCTTG	86210.3	PASS	AB=0.370166;ABP=559.543;AC=140;AF=0.744681;AN=188;AO=4171;CIGAR=4M1X;DP=6601;DPB=6601;DPRA=28.6783;EPP=8665.08;EPPR=4889.71;GTI=9;LEN=1;MEANALT=1.29348;MQM=59.7291;MQMR=59.7808;NS=94;NUMALT=1;ODDS=0.624424;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=149405;QR=85101;RO=2400;RPL=4125;RPP=8665.08;RPPR=4889.71;RPR=46;RUN=1;SAF=0;SAP=9060.22;SAR=4171;SRF=0;SRP=5214.54;SRR=2400;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:25:0,25:0:0:25:896:-80.9522,-7.52575,0	1/1:46:0,46:0:0:46:1626:-146.626,-13.8474,0	0/1:143:115,28:115:4087:28:1008:-47.9891,0,-324.963	0/1:287:188,97:188:6643:97:3460:-225.427,0,-511.724	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	1/1:78:0,77:0:0:77:2760:-248.086,-23.1793,0	0/1:104:68,36:68:2417:36:1296:-85.4466,0,-186.477	0/1:97:59,38:59:2110:38:1351:-92.6897,0,-160.957	1/1:66:0,66:0:0:66:2363:-212.928,-19.868,0	0/1:30:13,17:13:465:17:608:-46.0211,0,-32.1272	0/1:95:50,45:50:1778:45:1616:-117.123,0,-131.702	0/1:68:36,32:36:1288:32:1144:-82.7913,0,-95.7301	0/1:59:18,41:18:644:41:1463:-113.974,0,-40.5013	1/1:99:0,99:0:0:99:3544:-319.169,-29.802,0	0/1:58:27,30:27:961:30:1080:-79.9947,0,-69.2879	1/1:25:0,24:0:0:24:860:-77.3548,-7.22472,0	0/1:40:21,18:21:754:18:648:-46.5438,0,-56.0861	1/1:25:0,25:0:0:25:900:-81.3072,-7.52575,0	1/1:90:0,87:0:0:87:3124:-281.091,-26.1896,0	0/1:199:158,40:158:5586:40:1440:-69.9341,0,-442.804	1/1:40:0,37:0:0:37:1319:-118.655,-11.1381,0	1/1:68:0,68:0:0:68:2436:-218.703,-20.47,0	0/1:78:47,31:47:1681:31:1112:-76.9018,0,-128.096	1/1:33:0,32:0:0:32:1152:-103.621,-9.63296,0	0/1:150:111,39:111:3964:39:1400:-81.1355,0,-311.793	1/1:157:0,156:0:0:156:5587:-502.58,-46.9607,0	1/1:38:0,38:0:0:38:1364:-123.052,-11.4391,0	0/1:289:194,94:194:6891:94:3380:-217.349,0,-533.204	0/1:103:70,33:70:2482:33:1188:-76.2179,0,-192.624	0/1:115:93,22:93:3305:22:792:-36.981,0,-263.043	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:9:7,2:7:249:2:72:-4.12745,0,-20.046	0/1:8:4,4:4:143:4:144:-10.8546,0,-10.8132	0/1:173:90,83:90:3184:83:2961:-214.62,0,-234.698	1/1:62:0,61:0:0:61:2179:-196.039,-18.3628,0	1/1:42:0,41:0:0:41:1476:-132.761,-12.3422,0	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	1/1:74:0,73:0:0:73:2619:-235.649,-21.9752,0	1/1:26:0,26:0:0:26:932:-84.1942,-7.82678,0	1/1:88:0,88:0:0:88:3147:-283.448,-26.4906,0	1/1:40:0,40:0:0:40:1422:-128.272,-12.0412,0	1/1:78:0,78:0:0:78:2804:-252.59,-23.4803,0	0/1:65:31,34:31:1095:34:1215:-90.0888,0,-79.2913	1/1:55:0,55:0:0:55:1968:-177.362,-16.5567,0	0/1:184:132,52:132:4642:52:1864:-112.645,0,-362.477	1/1:61:0,61:0:0:61:2173:-195.802,-18.3628,0	0/1:119:81,37:81:2845:37:1329:-84.0201,0,-220.398	1/1:57:0,57:0:0:57:2048:-184.204,-17.1587,0	0/1:4:3,1:3:108:1:36:-2.39415,0,-8.87105	0/1:61:39,22:39:1381:22:788:-52.882,0,-106.223	0/1:58:37,21:37:1309:21:737:-49.1801,0,-100.651	0/1:7:1,6:1:31:6:212:-17.3176,0,-0.992244	0/1:119:73,45:73:2590:45:1612:-109.625,0,-197.614	1/1:39:0,39:0:0:39:1387:-125.126,-11.7402,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	1/1:9:0,9:0:0:9:324:-29.5059,-2.70927,0	1/1:64:0,64:0:0:64:2304:-207.59,-19.2659,0	0/1:92:46,45:46:1646:45:1616:-117.97,0,-120.603	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:103:0,103:0:0:103:3708:-333.897,-31.0061,0	1/1:105:5,100:5:171:100:3577:-306.407,-15.8859,0	1/1:55:0,55:0:0:55:1967:-177.298,-16.5567,0	0/1:81:47,33:47:1645:33:1177:-81.7881,0,-123.892	0/1:184:119,65:119:4196:65:2340:-155.463,0,-322.409	1/1:86:2,84:2:58:84:2993:-264.086,-20.3803,0	0/1:26:9,17:9:319:17:608:-47.2252,0,-21.2246	1/1:30:0,30:0:0:30:1080:-97.5132,-9.0309,0	0/1:30:15,15:15:539:15:540:-39.901,0,-39.8153	0/1:13:11,2:11:388:2:72:-2.92333,0,-31.343	1/1:67:0,65:0:0:65:2324:-209.051,-19.567,0	1/1:76:0,74:0:0:74:2638:-237.275,-22.2762,0	0/1:134:85,49:85:2988:49:1760:-118.34,0,-228.804	1/1:74:0,74:0:0:74:2656:-239.28,-22.2762,0	1/1:34:2,32:2:72:32:1152:-97.1453,-3.3983,0	0/1:91:53,38:53:1883:38:1368:-95.9822,0,-142.355	0/1:9:8,1:8:287:1:32:-0.490043,0,-23.4672	1/1:48:0,48:0:0:48:1716:-154.721,-14.4494,0	0/1:79:65,14:65:2313:14:500:-21.5548,0,-184.649	1/1:114:0,114:0:0:114:4083:-367.64,-34.3174,0	1/1:41:0,41:0:0:41:1452:-130.967,-12.3422,0	0/1:72:38,34:38:1362:34:1224:-88.7821,0,-101.206	1/1:52:0,51:0:0:51:1823:-163.991,-15.3525,0	1/1:121:1,119:1:36:119:4284:-382.076,-32.8848,0	0/1:32:10,22:10:359:22:775:-60.4268,0,-23.0207	1/1:69:0,69:0:0:69:2475:-222.993,-20.7711,0	0/1:62:30,32:30:1062:32:1143:-84.5067,0,-77.2252	0/1:30:12,18:12:432:18:648:-49.6128,0,-30.1903	0/1:57:23,34:23:827:34:1220:-92.9297,0,-57.5922	0/1:80:44,36:44:1561:36:1292:-92.5014,0,-116.696	1/1:88:0,87:0:0:87:3116:-280.297,-26.1896,0	1/1:126:1,125:1:36:125:4476:-399.399,-34.3315,0
chr12	25382254	.	T	C	135484	PASS	AB=0.468106;ABP=48.0273;AC=140;AF=0.744681;AN=188;AO=6596;CIGAR=1X;DP=9326;DPB=9326;DPRA=0;EPP=14326;EPPR=5879.09;GTI=1;LEN=1;MEANALT=1.04255;MQM=53.7492;MQMR=59.9043;NS=94;NUMALT=1;ODDS=2.51243;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=235761;QR=97740;RO=2726;RPL=0;RPP=14326;RPPR=5879.09;RPR=6596;RUN=1;SAF=6596;SAP=14326;SAR=0;SRF=2726;SRP=5922.44;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1535:-137.405,-12.9443,0	1/1:86:0,86:0:0:86:3065:-273.851,-25.8886,0	0/1:194:119,75:119:4272:75:2692:-182.922,0,-326.257	0/1:263:133,130:133:4772:130:4672:-340.099,0,-350.449	0/1:75:39,36:39:1395:36:1279:-92.4102,0,-103.271	0/1:39:21,18:21:756:18:644:-46.3654,0,-56.6189	1/1:88:0,88:0:0:88:3115:-280.234,-26.4906,0	0/1:234:130,104:130:4655:104:3724:-262.008,0,-348.393	0/1:82:37,45:37:1311:45:1620:-120.627,0,-92.9778	1/1:71:0,71:0:0:71:2512:-225.84,-21.3731,0	0/1:89:45,44:45:1616:44:1584:-115.662,0,-118.936	0/1:125:68,57:68:2448:57:2044:-145.064,0,-182.946	0/1:87:46,41:46:1656:41:1472:-106.047,0,-123.121	0/1:59:27,32:27:968:32:1144:-85.1828,0,-69.6766	1/1:90:0,90:0:0:90:3228:-290.162,-27.0927,0	0/1:130:56,74:56:2012:74:2643:-197.964,0,-142.215	1/1:35:0,35:0:0:35:1260:-113.238,-10.5361,0	0/1:35:21,14:21:756:14:485:-33.0491,0,-57.8312	1/1:41:0,41:0:0:41:1472:-131.668,-12.3422,0	1/1:121:0,121:0:0:121:4309:-387.305,-36.4246,0	0/1:189:119,70:119:4239:70:2497:-166.484,0,-324.78	1/1:125:1,124:1:36:124:4456:-397.133,-34.0305,0	1/1:131:0,131:0:0:131:4685:-420.958,-39.4349,0	0/1:49:22,27:22:792:27:972:-72.9087,0,-56.8552	1/1:58:1,57:1:36:57:2035:-179.066,-13.8615,0	0/1:218:116,102:116:4160:102:3647:-262.561,0,-308.938	1/1:273:0,272:0:0:272:9739:-873.235,-81.8802,0	1/1:27:0,27:0:0:27:947:-85.3944,-8.12781,0	0/1:313:178,135:178:6396:135:4830:-340.452,0,-481.503	0/1:139:86,53:86:3071:53:1908:-129.702,0,-234.767	0/1:87:42,45:42:1497:45:1596:-117.507,0,-108.833	0/1:27:17,10:17:608:10:360:-24.5537,0,-46.9242	1/1:32:0,32:0:0:32:1140:-102.507,-9.63296,0	1/1:12:0,12:0:0:12:432:-39.117,-3.61236,0	0/1:39:22,17:22:784:17:608:-43.1774,0,-59.1437	0/1:51:26,25:26:936:25:881:-64.0617,0,-69.2069	0/1:208:83,125:83:2979:125:4484:-340.535,0,-205.727	1/1:131:0,130:0:0:130:4633:-415.594,-39.1339,0	1/1:54:0,54:0:0:54:1940:-172.662,-16.2556,0	0/1:12:9,3:9:324:3:108:-6.07001,0,-25.8935	1/1:91:0,91:0:0:91:3252:-292.022,-27.3937,0	1/1:35:0,35:0:0:35:1260:-112.33,-10.5361,0	1/1:141:0,141:0:0:141:5048:-452.77,-42.4452,0	1/1:50:0,50:0:0:50:1796:-161.234,-15.0515,0	1/1:75:0,75:0:0:75:2667:-239.791,-22.5773,0	0/1:124:77,47:77:2756:47:1684:-114.203,0,-210.953	1/1:133:0,133:0:0:133:4755:-426.416,-40.037,0	0/1:225:112,113:112:4015:113:4044:-295.065,0,-293.798	1/1:99:1,98:1:36:98:3512:-311.692,-26.2037,0	0/1:133:71,62:71:2544:62:2232:-160.459,0,-189.172	1/1:84:0,84:0:0:84:3001:-270.079,-25.2865,0	0/1:20:14,6:14:504:6:216:-13.7556,0,-39.6729	0/1:105:52,53:52:1868:53:1904:-139.548,0,-136.791	0/1:38:19,19:19:665:19:661:-48.2782,0,-48.7336	0/1:17:12,5:12:432:5:180:-11.3929,0,-34.1037	0/1:180:87,93:87:3124:93:3318:-243.053,0,-227.2	1/1:69:1,68:1:36:68:2411:-213.266,-17.1728,0	0/1:36:11,25:11:396:25:900:-70.4598,0,-25.1457	1/1:5:0,5:0:0:5:176:-16.1143,-1.50515,0	1/1:125:0,125:0:0:125:4454:-399.259,-37.6288,0	0/1:112:55,57:55:1976:57:2052:-150.71,0,-144.397	1/1:19:0,19:0:0:19:680:-61.3995,-5.71957,0	1/1:152:0,152:0:0:152:5422:-486.117,-45.7566,0	1/1:153:1,152:1:36:152:5438:-485.281,-42.4593,0	1/1:65:4,61:4:144:61:2192:-183.938,-6.25333,0	0/1:106:48,58:48:1728:58:2072:-154.619,0,-123.896	0/1:164:85,79:85:3044:79:2820:-203.958,0,-224.821	1/1:149:7,142:7:252:142:5104:-435.115,-21.8269,0	0/1:49:29,20:29:1040:20:712:-49.435,0,-79.1639	1/1:81:0,81:0:0:81:2881:-258.424,-24.3834,0	0/1:54:28,26:28:1000:26:923:-67.1014,0,-74.0598	0/1:12:9,3:9:320:3:108:-6.43197,0,-25.53	1/1:168:0,168:0:0:168:5969:-533.846,-50.573,0	1/1:74:0,74:0:0:74:2619:-235.141,-22.2762,0	0/1:156:89,66:89:3191:66:2355:-163.528,0,-240.371	1/1:135:0,134:0:0:134:4774:-428.848,-40.338,0	1/1:164:0,164:0:0:164:5846:-524.077,-49.3689,0	0/1:130:69,61:69:2480:61:2192:-156.993,0,-184.129	0/1:39:23,16:23:828:16:576:-39.3914,0,-63.1039	1/1:111:0,111:0:0:111:3957:-355.636,-33.4143,0	0/1:168:85,83:85:3039:83:2969:-215.666,0,-223.163	1/1:110:0,110:0:0:110:3944:-353.846,-33.1133,0	1/1:70:0,70:0:0:70:2516:-226.245,-21.0721,0	0/1:70:32,38:32:1148:38:1360:-101.275,0,-82.5577	1/1:43:0,43:0:0:43:1548:-139.216,-12.9443,0	1/1:134:1,133:1:36:133:4752:-422.409,-36.7397,0	0/1:24:12,12:12:432:12:432:-31.8775,0,-31.9965	1/1:88:0,88:0:0:88:3144:-281.745,-26.4906,0	0/1:98:50,48:50:1800:48:1719:-124.507,0,-132.781	0/1:59:32,27:32:1152:27:964:-68.8909,0,-86.2294	0/1:139:80,59:80:2876:59:2102:-146.833,0,-216.743	0/1:93:66,27:66:2367:27:955:-58.208,0,-185.292	1/1:83:0,83:0:0:83:2968:-266.912,-24.9855,0	1/1:107:0,107:0:0:107:3828:-344.442,-32.2102,0
chr12	25382264	.	C	T	134067	PASS	AB=0.469567;ABP=43.3219;AC=140;AF=0.744681;AN=188;AO=6513;CIGAR=1X;DP=9189;DPB=9189;DPRA=0;EPP=14145.8;EPPR=5637.11;GTI=1;LEN=1;MEANALT=1.02128;MQM=53.7468;MQMR=59.9237;NS=94;NUMALT=1;ODDS=2.01459;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=233079;QR=95381;RO=2674;RPL=0;RPP=14145.8;RPPR=5645.67;RPR=6513;RUN=1;SAF=6513;SAP=14145.8;SAR=0;SRF=2673;SRP=5800.84;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:43:0,43:0:0:43:1544:-138.212,-12.9443,0	1/1:88:0,88:0:0:88:3156:-281.932,-26.4906,0	0/1:190:116,74:116:4143:74:2656:-180.896,0,-315.858	0/1:263:135,128:135:4801:128:4583:-332.395,0,-353.06	0/1:76:40,36:40:1428:36:1296:-93.615,0,-105.938	0/1:39:21,18:21:756:18:648:-46.7218,0,-56.6189	1/1:87:0,87:0:0:87:3097:-278.54,-26.1896,0	0/1:229:127,102:127:4486:102:3656:-257.269,0,-334.709	0/1:82:36,45:36:1283:45:1611:-119.928,0,-91.1512	1/1:69:0,69:0:0:69:2454:-220.671,-20.7711,0	0/1:86:43,43:43:1536:43:1539:-112.604,0,-112.644	0/1:122:65,57:65:2300:57:2043:-145.849,0,-170.534	0/1:84:43,41:43:1536:41:1472:-106.95,0,-113.229	0/1:59:27,32:27:968:32:1152:-85.8279,0,-69.6766	1/1:89:0,89:0:0:89:3187:-286.473,-26.7917,0	0/1:129:54,75:54:1927:75:2684:-201.878,0,-134.873	1/1:36:0,36:0:0:36:1284:-115.5,-10.8371,0	0/1:36:20,15:20:716:15:527:-36.259,0,-53.8719	1/1:41:0,41:0:0:41:1472:-131.652,-12.3422,0	1/1:114:0,114:0:0:114:4083:-366.921,-34.3174,0	0/1:181:114,67:114:4043:67:2403:-160.517,0,-309.565	1/1:123:1,122:1:36:122:4361:-388.666,-33.4284,0	1/1:127:0,127:0:0:127:4548:-408.709,-38.2308,0	0/1:50:23,27:23:824:27:972:-72.6077,0,-59.4318	1/1:58:1,57:1:36:57:2032:-178.659,-13.8615,0	0/1:214:115,99:115:4116:99:3560:-255.819,0,-306.185	1/1:271:0,271:0:0:271:9668:-867.382,-81.5791,0	1/1:27:0,27:0:0:27:972:-87.5303,-8.12781,0	0/1:306:172,134:172:6151:134:4797:-339.534,0,-461.573	0/1:135:85,50:85:3026:50:1792:-120.501,0,-231.923	0/1:86:41,45:41:1472:45:1612:-119.238,0,-106.888	0/1:27:17,10:17:608:10:345:-23.1947,0,-46.9242	1/1:31:0,31:0:0:31:1104:-99.4017,-9.33193,0	1/1:12:0,12:0:0:12:424:-38.402,-3.61236,0	0/1:39:22,17:22:775:17:612:-43.5339,0,-58.331	0/1:52:27,25:27:964:25:892:-64.7515,0,-71.4233	0/1:207:83,124:83:2963:124:4445:-337.424,0,-204.59	1/1:130:0,130:0:0:130:4657:-418.193,-39.1339,0	1/1:52:0,52:0:0:52:1864:-166.108,-15.6536,0	0/1:12:9,3:9:324:3:108:-6.07001,0,-25.8935	1/1:88:0,88:0:0:88:3137:-282.013,-26.4906,0	1/1:36:0,36:0:0:36:1271:-113.812,-10.8371,0	1/1:138:0,138:0:0:138:4939:-442.791,-41.5421,0	1/1:50:0,50:0:0:50:1796:-161.234,-15.0515,0	1/1:72:0,72:0:0:72:2575:-231.539,-21.6742,0	0/1:123:76,47:76:2712:47:1665:-112.927,0,-207.296	1/1:132:0,132:0:0:132:4728:-423.696,-39.736,0	0/1:218:108,110:108:3827:110:3929:-286.998,0,-279.002	1/1:101:1,100:1:36:100:3563:-316.418,-26.8058,0	0/1:132:70,62:70:2499:62:2216:-159.449,0,-185.422	1/1:83:0,83:0:0:83:2955:-265.946,-24.9855,0	0/1:20:14,6:14:500:6:216:-13.7556,0,-39.3109	0/1:103:51,52:51:1806:52:1855:-135.775,0,-131.814	0/1:39:20,19:20:704:19:684:-50.0207,0,-51.9444	0/1:17:12,5:12:432:5:180:-11.3929,0,-34.1037	0/1:177:85,92:85:3035:92:3307:-242.89,0,-220.098	1/1:69:1,68:1:36:68:2435:-215.341,-17.1728,0	0/1:35:10,25:10:360:25:900:-70.7608,0,-22.2083	1/1:5:0,5:0:0:5:180:-16.4764,-1.50515,0	1/1:126:0,126:0:0:126:4478:-401.318,-37.9298,0	0/1:113:56,57:56:1996:57:2052:-150.409,0,-145.895	1/1:19:0,19:0:0:19:684:-61.7592,-5.71957,0	1/1:151:0,151:0:0:151:5411:-484.643,-45.4555,0	1/1:149:1,148:1:36:148:5297:-472.648,-41.2552,0	1/1:65:5,60:5:180:60:2147:-176.648,-3.01489,0	0/1:105:49,56:49:1756:56:2004:-148.803,0,-126.716	0/1:158:82,76:82:2919:76:2717:-196.739,0,-215.383	1/1:147:6,141:6:216:141:5059:-434.163,-24.4609,0	0/1:49:27,22:27:963:22:784:-55.6167,0,-72.2355	1/1:78:0,78:0:0:78:2784:-249.725,-23.4803,0	0/1:51:27,24:27:964:24:864:-62.7082,0,-71.7243	0/1:12:9,3:9:324:3:108:-6.43197,0,-25.8935	1/1:164:0,164:0:0:164:5884:-526.085,-49.3689,0	1/1:71:0,71:0:0:71:2544:-228.184,-21.3731,0	0/1:151:85,66:85:3040:66:2349:-164.681,0,-228.351	1/1:137:0,137:0:0:137:4889:-439.267,-41.2411,0	1/1:161:0,161:0:0:161:5772:-517.776,-48.4658,0	0/1:130:70,60:70:2504:60:2152:-153.415,0,-186.289	0/1:39:23,16:23:807:16:572:-39.0381,0,-61.209	1/1:108:0,108:0:0:108:3872:-347.11,-32.5112,0	0/1:162:80,82:80:2859:82:2952:-215.944,0,-208.777	1/1:108:0,108:0:0:108:3863:-346.769,-32.5112,0	1/1:68:0,68:0:0:68:2446:-219.992,-20.47,0	0/1:67:30,37:30:1080:37:1328:-99.5657,0,-77.3442	1/1:44:0,44:0:0:44:1584:-142.385,-13.2453,0	1/1:132:1,131:1:36:131:4668:-414.952,-36.1377,0	0/1:23:12,11:12:428:11:396:-28.9482,0,-31.9351	1/1:89:1,88:1:36:88:3139:-277.67,-23.1934,0	0/1:98:50,48:50:1796:48:1724:-124.916,0,-132.421	0/1:57:31,26:31:1116:26:932:-66.6258,0,-83.593	0/1:135:77,58:77:2760:58:2074:-145.451,0,-207.732	0/1:93:67,26:67:2400:26:932:-56.139,0,-188.261	1/1:83:0,83:0:0:83:2967:-266.821,-24.9855,0	1/1:106:0,106:0:0:106:3808:-342.643,-31.9092,0
chr12	25382336	.	G	A	157824	PASS	AB=0.475158;ABP=28.4718;AC=139;AF=0.747312;AN=186;AO=7384;CIGAR=1X;DP=9891;DPB=9891;DPRA=21.4913;EPP=15734.6;EPPR=5366.83;GTI=1;LEN=1;MEANALT=1.01087;MQM=59.9725;MQMR=59.9888;NS=93;NUMALT=1;ODDS=3.05126;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=264039;QR=89483;RO=2506;RPL=35;RPP=15734.6;RPPR=5366.83;RPR=7349;RUN=1;SAF=0;SAP=16037.2;SAR=7384;SRF=0;SRP=5444.72;SRR=2506;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:53:0,53:0:0:53:1885:-169.927,-15.9546,0	1/1:116:0,116:0:0:116:4149:-373.593,-34.9195,0	0/1:130:66,64:66:2334:64:2288:-167.047,0,-171.185	0/1:235:131,104:131:4685:104:3713:-263.629,0,-351.067	0/1:53:17,36:17:612:36:1296:-100.989,0,-39.4588	0/1:78:34,44:34:1184:44:1571:-118.201,0,-83.3816	1/1:131:0,131:0:0:131:4674:-420.822,-39.4349,0	0/1:140:88,52:88:3130:52:1868:-126.255,0,-239.78	0/1:96:38,58:38:1360:58:2076:-158.211,0,-93.8017	1/1:143:0,143:0:0:143:5106:-459.41,-43.0473,0	0/1:59:34,25:34:1216:25:900:-63.5602,0,-91.9858	0/1:95:51,44:51:1806:44:1573:-113.263,0,-134.222	0/1:101:53,48:53:1880:48:1728:-125.401,0,-139.072	0/1:102:49,53:49:1760:53:1900:-140.573,0,-127.979	1/1:121:0,121:0:0:121:4309:-387.984,-36.4246,0	0/1:77:39,38:39:1396:38:1364:-99.8814,0,-102.76	1/1:87:0,87:0:0:87:3128:-281.745,-26.1896,0	0/1:76:46,30:46:1652:30:1076:-74.2746,0,-126.089	1/1:37:0,37:0:0:37:1315:-118.651,-11.1381,0	1/1:252:0,252:0:0:252:8956:-806.02,-75.8596,0	0/1:134:79,55:79:2819:55:1980:-138.136,0,-213.603	1/1:108:0,108:0:0:108:3846:-346.334,-32.5112,0	1/1:85:0,85:0:0:85:3045:-274.278,-25.5876,0	0/1:184:106,78:106:3774:78:2804:-197.21,0,-284.47	1/1:74:0,74:0:0:74:2660:-239.645,-22.2762,0	0/1:283:150,132:150:5352:132:4721:-339.945,0,-396.714	1/1:249:1,248:1:36:248:8902:-797.561,-71.3582,0	1/1:43:0,43:0:0:43:1544:-139.253,-12.9443,0	0/1:244:118,126:118:4232:126:4520:-333.515,0,-307.608	0/1:177:67,110:67:2395:110:3921:-299.8,0,-162.524	0/1:111:67,44:67:2404:44:1580:-109.077,0,-183.202	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:3:0,3:0:0:3:108:-10.0752,-0.90309,0	0/0:5:5,0:5:176:0:0:0,-1.50515,-16.185	0/1:323:147,176:147:5259:176:6290:-468.96,0,-376.214	1/1:128:0,128:0:0:128:4585:-412.813,-38.5318,0	1/1:71:0,71:0:0:71:2556:-230.29,-21.3731,0	0/1:6:4,2:4:144:2:72:-5.03054,0,-11.5074	1/1:136:0,136:0:0:136:4842:-435.933,-40.9401,0	1/1:39:0,39:0:0:39:1400:-126.299,-11.7402,0	1/1:137:1,136:1:36:136:4866:-434.492,-37.6428,0	1/1:114:1,113:1:36:113:4052:-361.268,-30.7191,0	1/1:99:0,99:0:0:99:3536:-318.449,-29.802,0	0/1:141:67,74:67:2387:74:2656:-196.838,0,-172.641	1/1:96:0,96:0:0:96:3415:-307.533,-28.8989,0	0/1:183:113,70:113:4039:70:2484:-168.723,0,-308.609	1/1:103:0,103:0:0:103:3653:-328.973,-31.0061,0	0/1:121:83,38:83:2952:38:1345:-84.9235,0,-229.488	1/1:203:0,203:0:0:203:7237:-651.379,-61.1091,0	.:.:.:.:.:.:.:.	0/1:82:42,40:42:1500:40:1436:-104.853,0,-110.61	0/1:12:7,5:7:252:5:176:-12.5727,0,-19.4166	0/1:5:3,2:3:108:2:68:-4.95256,0,-8.57002	0/1:142:73,69:73:2602:69:2472:-179.988,0,-191.681	1/1:57:0,57:0:0:57:2012:-181.352,-17.1587,0	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:16:0,16:0:0:16:576:-52.175,-4.81648,0	1/1:93:1,92:1:36:92:3308:-294.339,-24.3975,0	0/1:140:64,76:64:2259:76:2736:-204.338,0,-161.426	1/1:7:0,7:0:0:7:252:-23.029,-2.10721,0	1/1:213:0,213:0:0:213:7602:-684.217,-64.1194,0	1/1:330:0,330:0:0:330:11773:-1059.33,-99.3399,0	1/1:41:2,39:2:72:39:1383:-117.931,-5.50551,0	0/1:46:26,20:26:932:20:716:-50.9203,0,-70.3515	0/1:160:85,75:85:3043:75:2662:-191.66,0,-225.923	1/1:16:1,15:1:36:15:540:-45.3383,-1.21821,0	0/1:18:10,8:10:360:8:288:-20.8489,0,-27.3258	1/1:63:0,63:0:0:63:2256:-203.303,-18.9649,0	0/1:98:57,41:57:2043:41:1459:-102.104,0,-154.64	0/1:20:10,10:10:356:10:356:-26.3606,0,-26.3606	1/1:138:0,138:0:0:138:4948:-445.469,-41.5421,0	1/1:79:0,79:0:0:79:2844:-256.197,-23.7814,0	0/1:157:78,79:78:2784:79:2816:-206.401,0,-203.54	1/1:129:0,129:0:0:129:4628:-416.682,-38.8329,0	1/1:125:0,125:0:0:125:4460:-401.379,-37.6288,0	0/1:123:41,82:41:1476:82:2936:-227.448,0,-96.1095	0/1:5:1,4:1:36:4:144:-11.8085,0,-2.09312	1/1:113:0,113:0:0:113:4063:-365.833,-34.0164,0	0/1:70:43,27:43:1544:27:968:-66.3653,0,-118.181	1/1:220:0,220:0:0:220:7881:-709.314,-66.2266,0	1/1:146:0,146:0:0:146:5232:-471.015,-43.9504,0	0/1:90:47,43:47:1674:43:1524:-110.359,0,-123.853	1/1:138:1,137:1:36:137:4918:-439.17,-37.9439,0	1/1:240:1,239:1:36:239:8576:-768.236,-68.6489,0	0/1:69:40,29:40:1436:29:1040:-73.1433,0,-108.767	1/1:120:0,120:0:0:120:4312:-388.255,-36.1236,0	0/1:122:67,55:67:2399:55:1948:-138.869,0,-179.44	0/1:37:21,16:21:752:16:561:-39.6799,0,-56.8681	0/1:78:44,34:44:1567:34:1220:-86.6265,0,-117.841	0/1:119:81,38:81:2912:38:1358:-86.6977,0,-226.492	1/1:78:0,78:0:0:78:2755:-248.18,-23.4803,0	1/1:138:0,138:0:0:138:4945:-445.197,-41.5421,0
chr12	25416568	.	T	C	188143	PASS	AB=0.473878;ABP=39.9935;AC=139;AF=0.739362;AN=188;AO=9240;CIGAR=1X;DP=12552;DPB=12552;DPRA=19.4689;EPP=20067.4;EPPR=7184.07;GTI=0;LEN=1;MEANALT=1.05435;MQM=59.9841;MQMR=59.9988;NS=94;NUMALT=1;ODDS=3.54179;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=323698;QR=118155;RO=3307;RPL=9240;RPP=20067.4;RPPR=7184.07;RPR=0;RUN=1;SAF=9240;SAP=20067.4;SAR=0;SRF=3307;SRP=7184.07;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:79:0,79:0:0:79:2819:-253.948,-23.7814,0	1/1:165:0,165:0:0:165:5768:-519.24,-49.67,0	0/1:318:144,174:144:5123:174:6100:-453.383,0,-365.485	0/1:410:217,193:217:7715:193:6640:-474.266,0,-570.96	0/1:73:42,31:42:1494:31:1099:-77.2443,0,-112.778	0/1:70:39,31:39:1396:31:1091:-77.4266,0,-104.867	1/1:105:0,105:0:0:105:3690:-332.299,-31.6082,0	0/1:262:146,116:146:5227:116:4081:-288.609,0,-391.697	0/1:145:76,69:76:2689:69:2447:-176.836,0,-198.603	1/1:82:0,82:0:0:82:2887:-260.066,-24.6845,0	0/1:39:24,15:24:864:15:523:-35.6583,0,-66.3424	0/1:88:54,34:54:1925:34:1166:-78.7487,0,-147.034	0/1:65:37,28:37:1328:28:967:-67.7709,0,-100.255	0/1:49:30,19:30:1076:19:658:-44.5618,0,-82.4024	1/1:69:0,69:0:0:69:2347:-211.486,-20.7711,0	0/1:51:26,25:26:924:25:841:-60.6437,0,-68.1251	1/1:29:0,29:0:0:29:1000:-90.3072,-8.72987,0	0/1:20:9,11:9:320:11:368:-27.4205,0,-23.1218	1/1:30:0,30:0:0:30:1051:-94.8996,-9.0309,0	1/1:305:0,305:0:0:305:10649:-958.334,-91.8142,0	0/1:287:143,143:143:5109:143:5002:-363.875,0,-373.498	1/1:188:0,188:0:0:188:6647:-598.311,-56.5936,0	1/1:220:2,218:2:72:218:7567:-674.247,-59.3899,0	0/1:82:38,44:38:1349:44:1580:-117.807,0,-97.0238	1/1:132:0,132:0:0:132:4602:-414.347,-39.736,0	0/1:428:248,180:248:8872:180:6274:-435.921,0,-669.622	1/1:368:0,368:0:0:368:12915:-1162.19,-110.779,0	1/1:29:0,29:0:0:29:1027:-92.7422,-8.72987,0	0/1:357:205,152:205:7311:152:5409:-379.474,0,-550.573	0/1:232:117,115:117:4178:115:4009:-291.164,0,-306.363	0/1:204:101,103:101:3610:103:3586:-261.537,0,-263.695	0/1:7:5,2:5:180:2:72:-4.72951,0,-14.4449	1/1:17:0,16:0:0:16:568:-51.0923,-4.81648,0	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:13:9,4:9:320:4:122:-7.36814,0,-25.229	0/1:20:7,13:7:252:13:446:-34.4458,0,-17.0084	0/1:205:114,91:114:4048:91:3169:-223.72,0,-302.797	1/1:218:0,218:0:0:218:7659:-689.355,-65.6245,0	1/1:39:0,39:0:0:39:1342:-121.074,-11.7402,0	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:168:2,166:2:63:166:5812:-517.217,-44.5899,0	1/1:21:0,21:0:0:21:736:-66.5624,-6.32163,0	1/1:223:0,223:0:0:223:7793:-701.414,-67.1297,0	1/1:55:0,55:0:0:55:1954:-176.134,-16.5567,0	1/1:37:0,37:0:0:37:1282:-115.676,-11.1381,0	0/1:129:59,70:59:2116:70:2448:-181.738,0,-151.876	1/1:252:0,252:0:0:252:8848:-796.316,-75.8596,0	0/1:304:167,137:167:5979:137:4790:-339.747,0,-446.702	1/1:176:2,174:2:72:174:6121:-544.16,-46.1446,0	0/1:188:99,89:99:3552:89:3127:-225.064,0,-263.294	1/1:164:0,164:0:0:164:5791:-521.308,-49.3689,0	0/1:13:8,5:8:288:5:176:-12.2716,0,-22.354	0/1:273:140,133:140:5024:133:4678:-339.002,0,-370.124	0/1:125:69,56:69:2467:56:1999:-142.554,0,-184.655	0/1:10:7,3:7:248:3:99:-6.22628,0,-19.6539	0/1:278:151,127:151:5392:127:4509:-322.164,0,-401.724	1/1:78:0,78:0:0:78:2737:-246.571,-23.4803,0	1/1:8:0,8:0:0:8:284:-25.9034,-2.40824,0	1/1:20:0,20:0:0:20:716:-64.7677,-6.0206,0	1/1:65:0,65:0:0:65:2252:-202.941,-19.567,0	0/1:96:47,49:47:1675:49:1707:-125.016,0,-122.138	1/1:5:0,5:0:0:5:167:-15.3584,-1.50515,0	1/1:318:0,318:0:0:318:11210:-1008.8,-95.7275,0	1/1:235:0,235:0:0:235:8241:-741.713,-70.7421,0	1/1:36:1,35:1:36:35:1225:-106.953,-7.23881,0	0/1:167:76,91:76:2732:91:3180:-236.153,0,-195.848	0/1:281:155,125:155:5556:125:4393:-310.896,0,-415.512	1/1:306:2,302:2:72:302:10567:-944.12,-85.0362,0	0/1:27:13,14:13:464:14:487:-36.0314,0,-33.9697	1/1:44:0,44:0:0:44:1550:-139.79,-13.2453,0	0/1:39:19,20:19:680:20:688:-50.4974,0,-49.789	0/1:15:5,10:5:180:10:342:-26.5936,0,-12.0366	1/1:229:0,229:0:0:229:7974:-717.694,-68.9359,0	1/1:79:1,78:1:36:78:2728:-242.163,-20.1831,0	0/1:201:103,98:103:3704:98:3396:-245.348,0,-273.053	1/1:345:0,345:0:0:345:12125:-1091.12,-103.855,0	1/1:103:1,102:1:36:102:3625:-322.858,-27.4078,0	0/1:145:69,76:69:2460:76:2600:-190.596,0,-178.005	0/0:7:7,0:7:252:0:0:0,-2.10721,-23.029	1/1:225:1,224:1:36:224:7867:-704.469,-64.1335,0	0/1:222:105,117:105:3752:117:4064:-299.12,0,-271.049	1/1:417:0,417:0:0:417:14679:-1320.87,-125.53,0	1/1:48:0,48:0:0:48:1695:-152.835,-14.4494,0	0/1:58:27,31:27:972:31:1094:-81.3085,0,-70.3382	1/1:35:0,35:0:0:35:1210:-109.201,-10.5361,0	1/1:136:0,136:0:0:136:4779:-430.274,-40.9401,0	0/1:27:17,10:17:612:10:352:-23.8904,0,-47.2856	1/1:67:0,67:0:0:67:2344:-211.219,-20.169,0	0/1:62:28,34:28:1000:34:1174:-87.2968,0,-71.6515	0/1:25:12,13:12:409:13:449:-33.2117,0,-29.6097	0/1:72:33,39:33:1184:39:1379:-102.734,0,-85.1942	0/1:58:41,17:41:1472:17:599:-36.7784,0,-115.316	1/1:227:0,227:0:0:227:7975:-717.78,-68.3338,0	1/1:100:0,100:0:0:100:3461:-311.599,-30.103,0
chr12	25416603	.	AAG	CAG,CAA	200521	PASS	AB=0.458907,0.536768;ABP=77.6089,62.7305;AC=139,49;AF=0.739362,0.260638;AN=188;AO=6733,2750;CIGAR=1X2M,1X1M1X;DP=9521;DPB=9521;DPRA=51.1774,1.36138;EPP=14623.5,5957.2;EPPR=13.8677;GTI=1;LEN=1,3;MEANALT=1.89247,2.33333;MQM=56.5366,56.2887;MQMR=60;NS=94;NUMALT=2;ODDS=0.0748523;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=240107,96515;QR=180;RO=5;RPL=0,2;RPP=14623.5,5957.2;RPPR=13.8677;RPR=6733,2748;RUN=1,1;SAF=0,0;SAP=14623.5,5974.56;SAR=6733,2750;SRF=0;SRP=13.8677;SRR=5;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8,0:0:0:8,0:288,0:-26.2606,-2.40824,0,-26.2606,-2.40824,-26.2606	1/1:185:0,185,0:0:0:185,0:6631,0:-596.385,-55.6906,0,-596.385,-55.6906,-596.385	1/2:115:0,62,53:0:0:62,53:2220,1880:-334.02,-153.134,-134.47,-181.242,0,-165.287	1/2:155:1,75,79:1:36:75,79:2700,2757:-440.623,-220.87,-201.23,-217.111,0,-196.267	1/2:58:0,36,22:0:0:36,22:1287,774:-168.219,-63.3295,-52.4924,-105.244,0,-98.6209	1/2:65:0,27,37:0:0:27,37:972,1309:-185.86,-106.639,-98.511,-79.3424,0,-68.2043	1/1:147:0,147,0:0:0:147,0:5237,0:-470.965,-44.2514,0,-470.965,-44.2514,-470.965	1/2:179:0,80,99:0:0:80,99:2846,3424:-510.178,-278.312,-254.229,-232.217,0,-202.415	1/2:134:0,39,95:0:0:39,95:1396,3307:-382.735,-268.993,-257.253,-114.096,0,-85.4984	1/1:67:0,67,0:0:0:67,0:2395,0:-215.578,-20.169,0,-215.578,-20.169,-215.578	1/2:81:0,40,41:0:0:40,41:1424,1449:-233.696,-118.076,-106.035,-115.974,0,-103.632	1/2:84:0,49,35:0:0:49,35:1721,1236:-240.803,-100.978,-86.2272,-140.177,0,-129.641	1/2:82:0,33,48:0:0:33,48:1149,1688:-230.767,-137.361,-127.427,-93.5543,0,-79.1049	1/2:105:0,56,49:0:0:56,49:2000,1720:-303.133,-140.152,-123.295,-163.334,0,-148.584	1/1:84:0,84,0:0:0:84,0:3000,0:-269.734,-25.2865,0,-269.734,-25.2865,-269.734	1/2:59:0,34,25:0:0:34,25:1212,862:-169.089,-70.3369,-60.1019,-99.1018,0,-91.5761	1/1:81:0,81,0:0:0:81,0:2886,0:-259.83,-24.3834,0,-259.83,-24.3834,-259.83	1/2:73:0,33,40:0:0:33,40:1171,1426:-211.631,-116.32,-106.386,-95.6654,0,-83.6242	1/1:48:0,48,0:0:0:48,0:1676,0:-150.81,-14.4494,0,-150.81,-14.4494,-150.81	1/1:215:0,215,0:0:0:215,0:7705,0:-692.302,-64.7215,0,-692.302,-64.7215,-692.302	1/2:139:0,67,72:0:0:67,72:2385,2575:-403.486,-209.25,-189.081,-194.591,0,-172.917	1/1:78:0,78,0:0:0:78,0:2786,0:-250.692,-23.4803,0,-250.692,-23.4803,-250.692	1/1:91:0,90,1:0:0:90,1:3209,36:-288.421,-27.0927,0,-285.486,-23.7981,-285.185	1/2:69:0,33,36:0:0:33,36:1165,1263:-197.362,-102.539,-92.6053,-95.1735,0,-84.3364	1/1:54:0,54,0:0:0:54,0:1932,0:-173.891,-16.2556,0,-173.891,-16.2556,-173.891	1/2:336:0,151,185:0:0:151,185:5391,6514:-967.296,-528.522,-483.066,-439.128,0,-383.438	1/1:180:0,175,2:0:0:175,2:6283,72:-564.927,-52.6803,0,-559.123,-46.875,-558.521	1/1:48:1,47,0:1:36:47,0:1664,0:-146.177,-10.8512,0,-146.478,-14.1484,-149.415	1/2:251:0,102,149:0:0:102,149:3645,5267:-725.838,-428.97,-398.265,-297.223,0,-252.37	1/2:217:0,100,116:0:0:100,116:3585,4074:-623.404,-331.225,-301.122,-292.255,0,-257.335	1/2:170:0,86,83:0:0:86,83:3069,2900:-484.415,-234.494,-208.605,-249.922,0,-224.937	1/2:12:0,4,8:0:0:4,8:144,286:-35.2724,-23.5274,-22.3233,-12.1032,0,-9.69493	1/1:9:0,9,0:0:0:9,0:324,0:-29.4918,-2.70927,0,-29.4918,-2.70927,-29.4918	1/1:9:0,9,0:0:0:9,0:324,0:-29.4923,-2.70927,0,-29.4923,-2.70927,-29.4923	1/2:10:0,3,7:0:0:3,7:108,227:-27.4088,-18.5884,-17.6853,-9.16926,0,-7.06205	1/2:6:0,3,3:0:0:3,3:108,108:-17.9788,-9.16926,-8.26617,-9.16926,0,-8.26617	1/2:256:0,124,129:0:0:124,129:4426,4539:-729.352,-369.154,-331.826,-360.248,0,-321.415	1/1:244:1,240,3:1:36:240,3:8549,103:-764.568,-69.304,0,-756.681,-64.0771,-758.716	1/1:82:0,82,0:0:0:82,0:2911,0:-261.898,-24.6845,0,-261.898,-24.6845,-261.898	2/2:2:0,0,2:0:0:0,2:0,72:-6.83347,-6.83347,-6.83347,-0.60206,-0.60206,0	1/1:144:1,143,0:1:36:143,0:5098,0:-454.745,-39.75,0,-455.046,-43.0473,-457.983	1/1:46:0,46,0:0:0:46,0:1635,0:-147.06,-13.8474,0,-147.06,-13.8474,-147.06	1/1:78:0,77,0:0:0:77,0:2736,0:-246.004,-23.1793,0,-246.004,-23.1793,-246.004	1/1:103:0,103,0:0:0:103,0:3661,0:-328.989,-31.0061,0,-328.989,-31.0061,-328.989	1/1:72:0,72,0:0:0:72,0:2565,0:-230.913,-21.6742,0,-230.913,-21.6742,-230.913	1/2:68:0,33,35:0:0:33,35:1169,1215:-194.071,-99.0845,-89.1505,-95.337,0,-84.8009	1/1:105:0,105,0:0:0:105,0:3752,0:-337.707,-31.6082,0,-337.707,-31.6082,-337.707	1/2:159:0,72,86:0:0:72,86:2588,3022:-456.465,-245.671,-223.997,-210.868,0,-184.98	1/1:129:0,126,0:0:0:126,0:4504,0:-404.798,-37.9298,0,-404.798,-37.9298,-404.798	1/2:191:0,85,106:0:0:85,106:3048,3743:-553.032,-304.711,-279.123,-248.677,0,-216.767	1/1:62:0,61,0:0:0:61,0:2187,0:-196.462,-18.3628,0,-196.462,-18.3628,-196.462	1/2:27:0,6,21:0:0:6,21:216,711:-75.5213,-57.9061,-56.0999,-17.9701,0,-11.6484	1/2:132:0,60,72:0:0:60,72:2156,2554:-383.624,-207.947,-189.885,-176.034,0,-154.36	1/2:35:0,17,18:0:0:17,18:598,619:-99.13,-50.4797,-45.3622,-48.9976,0,-43.5791	1/2:30:0,15,15:0:0:15,15:536,523:-86.5638,-42.8703,-38.3549,-44.0462,0,-39.5308	1/2:150:0,66,82:0:0:66,82:2355,2881:-426.241,-234.347,-214.479,-192.017,0,-167.332	1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chr12	25416622	.	G	A	143692	PASS	AB=0.467661;ABP=49.9198;AC=139;AF=0.739362;AN=188;AO=6922;CIGAR=1X;DP=9689;DPB=9689;DPRA=52.0806;EPP=15033.9;EPPR=5985.43;GTI=1;LEN=1;MEANALT=1.03226;MQM=56.4333;MQMR=56.2345;NS=94;NUMALT=1;ODDS=1.05855;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=247804;QR=98935;RO=2763;RPL=6922;RPP=15033.9;RPPR=5985.43;RPR=0;RUN=1;SAF=0;SAP=15033.9;SAR=6922;SRF=0;SRP=6002.79;SRR=2763;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:8:0,8:0:0:8:288:-26.2606,-2.40824,0	1/1:186:0,186:0:0:186:6658:-598.88,-55.9916,0	0/1:117:54,63:54:1932:63:2264:-168.641,0,-138.542	0/1:160:79,81:79:2823:81:2897:-211.913,0,-205.65	0/1:58:22,36:22:792:36:1292:-99.0727,0,-54.1147	0/1:67:37,30:37:1306:30:1076:-76.8194,0,-97.6101	1/1:153:0,153:0:0:153:5483:-492.937,-46.0576,0	0/1:176:96,80:96:3429:80:2880:-206.373,0,-255.392	0/1:135:95,40:95:3404:40:1436:-88.7257,0,-265.646	1/1:68:0,68:0:0:68:2425:-218.274,-20.47,0	0/1:85:42,43:42:1504:43:1536:-112.412,0,-109.695	0/1:86:36,50:36:1283:50:1792:-135.48,0,-89.848	0/1:83:48,35:48:1720:35:1237:-85.7595,0,-129.898	0/1:106:49,57:49:1756:57:2033:-151.239,0,-126.243	1/1:85:0,85:0:0:85:3056:-274.689,-25.5876,0	0/1:60:26,34:26:932:34:1224:-92.3534,0,-66.0323	1/1:79:0,79:0:0:79:2836:-255.332,-23.7814,0	0/1:74:40,34:40:1440:34:1220:-87.7305,0,-107.344	1/1:49:0,49:0:0:49:1760:-158.361,-14.7505,0	1/1:221:0,221:0:0:221:7888:-708.634,-66.5276,0	0/1:141:72,69:72:2588:69:2461:-179.192,0,-189.646	1/1:82:0,82:0:0:82:2948:-265.198,-24.6845,0	1/1:96:1,95:1:36:95:3416:-303.704,-25.3032,0	0/1:70:36,34:36:1292:34:1220:-88.9841,0,-94.9156	1/1:55:0,55:0:0:55:1972:-177.487,-16.5567,0	0/1:342:186,155:186:6657:155:5553:-396.103,0,-494.19	1/1:183:2,181:2:72:181:6493:-577.199,-48.3268,0	1/1:49:0,49:0:0:49:1760:-158.441,-14.7505,0	0/1:251:148,103:148:5313:103:3682:-254.922,0,-402.371	0/1:217:116,101:116:4127:101:3621:-260.55,0,-305.868	0/1:173:84,89:84:3020:89:3165:-232.646,0,-218.18	0/1:12:8,4:8:288:4:144:-9.69493,0,-22.5047	1/1:10:0,10:0:0:10:356:-32.3669,-3.0103,0	1/1:10:0,10:0:0:10:360:-32.7298,-3.0103,0	0/1:9:6,3:6:216:3:108:-7.36308,0,-17.0757	0/1:6:3,3:3:108:3:108:-8.26617,0,-8.26617	0/1:260:132,128:132:4735:128:4581:-333.346,0,-346.925	1/1:246:0,244:0:0:244:8694:-780.501,-73.4513,0	1/1:85:0,85:0:0:85:3048:-274.23,-25.5876,0	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83347	1/1:146:0,146:0:0:146:5240:-471.052,-43.9504,0	1/1:46:0,46:0:0:46:1656:-148.907,-13.8474,0	1/1:77:0,77:0:0:77:2749:-247.454,-23.1793,0	1/1:103:0,103:0:0:103:3685:-331.137,-31.0061,0	1/1:75:0,75:0:0:75:2685:-241.697,-22.5773,0	0/1:70:36,34:36:1292:34:1213:-88.2352,0,-95.4775	1/1:107:0,107:0:0:107:3845:-346.008,-32.2102,0	0/1:162:87,75:87:3105:75:2679:-192.264,0,-230.461	1/1:133:0,133:0:0:133:4759:-426.558,-40.037,0	0/1:194:106,88:106:3800:88:3160:-225.926,0,-283.307	1/1:62:0,62:0:0:62:2232:-200.734,-18.6639,0	0/1:27:21,6:21:737:6:216:-11.6484,0,-58.3922	0/1:135:73,62:73:2620:62:2228:-159.964,0,-194.325	0/1:38:18,20:18:648:20:705:-52.261,0,-47.039	0/1:32:15,17:15:531:17:606:-45.2047,0,-38.4761	0/1:153:82,71:82:2944:71:2540:-181.946,0,-218.742	1/1:38:0,38:0:0:38:1353:-121.901,-11.4391,0	0/1:34:10,24:10:360:24:864:-67.8214,0,-22.3139	1/1:24:0,24:0:0:24:864:-78.0593,-7.22472,0	1/1:97:0,97:0:0:97:3446:-309.918,-29.1999,0	0/1:123:70,53:70:2511:53:1904:-134.436,0,-188.623	1/1:13:0,13:0:0:13:468:-42.429,-3.91339,0	1/1:154:0,154:0:0:154:5498:-494.201,-46.3586,0	1/1:203:1,201:1:36:201:7183:-642.315,-57.4822,0	1/1:60:4,56:4:144:56:2008:-166.622,-4.75451,0	0/1:68:38,30:38:1364:30:1080:-76.8799,0,-102.409	0/1:230:134,96:134:4770:96:3420:-238.181,0,-358.822	1/1:94:0,94:0:0:94:3372:-303.235,-28.2968,0	0/1:49:22,27:22:788:27:968:-72.6154,0,-56.3941	1/1:63:0,63:0:0:63:2264:-203.482,-18.9649,0	0/1:93:49,44:49:1760:44:1584:-114.787,0,-130.576	0/1:31:24,7:24:860:7:248:-13.2321,0,-68.3385	1/1:125:0,125:0:0:125:4473:-402.436,-37.6288,0	1/1:51:0,51:0:0:51:1832:-164.929,-15.3525,0	0/1:219:98,121:98:3524:121:4348:-325.104,0,-250.435	1/1:173:3,170:3:108:170:6112:-539.72,-42.0103,0	1/1:77:0,77:0:0:77:2742:-246.862,-23.1793,0	0/1:185:93,92:93:3325:92:3308:-241.341,0,-243.103	0/1:12:6,6:6:216:6:216:-16.1726,0,-16.1726	1/1:99:0,99:0:0:99:3552:-319.514,-29.802,0	0/1:139:72,67:72:2584:67:2378:-172.059,0,-189.648	1/1:151:0,151:0:0:151:5342:-479.961,-45.4555,0	1/1:133:0,133:0:0:133:4758:-427.73,-40.037,0	0/1:65:37,28:37:1332:28:1008:-71.4045,0,-100.394	1/1:105:0,105:0:0:105:3761:-338.444,-31.6082,0	1/1:159:1,158:1:36:158:5646:-504.006,-44.2681,0	0/1:50:27,23:27:964:23:828:-59.0674,0,-70.9806	1/1:87:0,87:0:0:87:3128:-281.167,-26.1896,0	0/1:90:42,48:42:1504:48:1728:-128.209,0,-107.372	0/1:52:23,29:23:824:29:1029:-77.1567,0,-58.7274	0/1:127:76,51:76:2732:51:1821:-125.793,0,-207.52	0/1:98:74,24:74:2635:24:864:-48.5032,0,-207.256	1/1:92:0,92:0:0:92:3297:-296.563,-27.6948,0	1/1:111:1,110:1:36:110:3940:-350.162,-29.8187,0
chr12	25432834	.	A	G	78601	PASS	AB=0.503719;ABP=3.30103;AC=139;AF=0.739362;AN=188;AO=3695;CIGAR=1X;DP=4907;DPB=4907;DPRA=13.1801;EPP=7734;EPPR=2552.9;GTI=2;LEN=1;MEANALT=1.02151;MQM=59.9924;MQMR=59.9818;NS=94;NUMALT=1;ODDS=0.0604986;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=131327;QR=43127;RO=1210;RPL=34;RPP=7734;RPPR=2552.9;RPR=3661;RUN=1;SAF=3695;SAP=8026.6;SAR=0;SRF=1210;SRP=2630.49;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:9:0,9:0:0:9:307:-27.9602,-2.70927,0	1/1:94:0,94:0:0:94:3346:-301.357,-28.2968,0	0/1:107:60,47:60:2143:47:1672:-118.557,0,-160.927	0/1:125:59,66:59:2120:66:2347:-173.86,0,-153.44	0/1:41:17,24:17:612:24:847:-64.2065,0,-43.0712	0/1:20:6,14:6:216:14:500:-39.3156,0,-13.7699	1/1:56:0,56:0:0:56:1971:-177.665,-16.8577,0	0/1:57:28,29:28:988:29:1030:-75.8543,0,-72.0752	0/1:39:16,23:16:564:23:815:-61.9306,0,-39.3501	1/1:48:0,48:0:0:48:1707:-153.915,-14.4494,0	0/1:20:13,7:13:464:7:252:-17.0084,0,-36.0769	0/1:34:13,21:13:464:21:748:-57.4103,0,-31.8625	0/1:30:19,11:19:676:11:377:-25.2279,0,-52.1371	0/1:35:15,20:15:536:20:707:-53.4185,0,-38.0388	1/1:39:0,39:0:0:39:1383:-124.768,-11.7402,0	0/1:34:15,19:15:540:19:668:-50.2093,0,-38.7015	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	0/1:27:17,10:17:608:10:360:-24.6165,0,-46.9242	1/1:22:0,22:0:0:22:784:-70.8839,-6.62266,0	1/1:97:0,97:0:0:97:3438:-309.634,-29.1999,0	0/1:57:26,31:26:928:31:1112:-83.2326,0,-66.6749	1/1:86:0,86:0:0:86:3046:-274.37,-25.8886,0	1/1:41:0,41:0:0:41:1459:-131.605,-12.3422,0	0/1:32:17,15:17:604:15:536:-38.9419,0,-45.0576	1/1:24:0,24:0:0:24:864:-78.0826,-7.22472,0	0/1:183:96,87:96:3394:87:3096:-223.779,0,-250.589	1/1:118:1,117:1:36:117:4131:-368.379,-31.9233,0	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:206:88,118:88:3148:118:4180:-314.372,0,-221.533	0/1:84:43,41:43:1524:41:1452:-105.688,0,-112.167	0/1:64:40,24:40:1432:24:848:-57.3737,0,-109.912	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	1/1:2:0,1:0:0:1:36:-3.23845,-0.30103,0	0/1:6:4,2:4:144:2:68:-4.65153,0,-11.5074	0/1:8:2,6:2:68:6:216:-17.3823,0,-4.04947	0/1:124:64,60:64:2296:60:2144:-155.9,0,-169.573	1/1:92:0,91:0:0:91:3243:-291.731,-27.3937,0	1/1:38:0,38:0:0:38:1347:-121.529,-11.4391,0	0/1:4:1,3:1:36:3:104:-8.49868,0,-2.39415	1/1:87:0,87:0:0:87:3088:-278.145,-26.1896,0	1/1:29:0,29:0:0:29:1044:-94.2748,-8.72987,0	1/1:66:0,66:0:0:66:2323:-209.328,-19.868,0	1/1:51:0,51:0:0:51:1820:-164.081,-15.3525,0	1/1:24:0,24:0:0:24:840:-75.9176,-7.22472,0	0/1:46:28,18:28:1004:18:643:-44.3528,0,-76.8285	1/1:40:0,40:0:0:40:1425:-128.547,-12.0412,0	0/1:98:34,64:34:1208:64:2280:-175.961,0,-79.5027	1/1:61:0,61:0:0:61:2188:-197.186,-18.3628,0	0/1:79:40,39:40:1428:39:1400:-102.518,0,-105.034	1/1:66:0,66:0:0:66:2344:-211.218,-19.868,0	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:63:27,36:27:968:36:1276:-96.1782,0,-68.4725	0/1:41:25,16:25:900:16:572:-39.4712,0,-68.9788	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:73:34,39:34:1180:39:1392:-103.604,0,-84.5265	1/1:21:0,21:0:0:21:744:-67.2834,-6.32163,0	0/1:7:4,3:4:140:3:108:-7.96796,0,-10.8374	1/1:10:0,10:0:0:10:346:-31.4734,-3.0103,0	1/1:34:0,34:0:0:34:1214:-109.566,-10.235,0	0/1:77:35,42:35:1252:42:1482:-110.494,0,-89.8058	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:129:0,129:0:0:129:4583:-412.636,-38.8329,0	1/1:102:1,101:1:36:101:3591:-319.8,-27.1068,0	1/1:36:0,36:0:0:36:1276:-115.142,-10.8371,0	0/1:51:24,27:24:860:27:960:-71.3637,0,-62.3693	0/1:72:39,33:39:1388:33:1183:-85.1042,0,-103.545	1/1:65:0,65:0:0:65:2332:-210.14,-19.567,0	0/1:13:7,6:7:248:6:216:-15.8771,0,-18.7508	1/1:32:0,32:0:0:32:1140:-102.909,-9.63296,0	0/1:56:35,21:35:1235:21:752:-51.1486,0,-94.5958	0/1:15:6,9:6:216:9:320:-24.6269,0,-15.2751	1/1:73:0,73:0:0:73:2574:-231.91,-21.9752,0	1/1:33:0,33:0:0:33:1167:-105.336,-9.93399,0	0/1:40:20,20:20:712:20:720:-53.0876,0,-52.3655	1/1:85:0,85:0:0:85:3044:-274.19,-25.5876,0	1/1:85:0,85:0:0:85:3040:-273.83,-25.5876,0	0/1:42:20,22:20:708:22:792:-58.9624,0,-51.4023	0/1:5:4,1:4:140:1:36:-2.09312,0,-11.4394	1/1:60:0,60:0:0:60:2143:-193.137,-18.0618,0	0/1:63:29,34:29:1032:34:1216:-90.7817,0,-74.2286	1/1:106:0,106:0:0:106:3750:-337.702,-31.9092,0	1/1:78:1,77:1:36:77:2730:-242.345,-19.8821,0	0/1:24:9,15:9:324:15:528:-40.6266,0,-22.2811	1/1:38:0,38:0:0:38:1351:-121.89,-11.4391,0	1/1:70:2,68:2:72:68:2420:-211.22,-14.2354,0	0/1:23:11,12:11:392:12:419:-31.119,0,-28.6964	1/1:53:0,53:0:0:53:1847:-166.507,-15.9546,0	0/1:54:27,27:27:968:27:945:-69.1066,0,-71.1817	0/1:18:12,6:12:424:6:212:-14.0063,0,-33.0779	0/1:67:37,30:37:1328:30:1076:-76.9838,0,-99.6532	0/1:45:29,16:29:1027:16:576:-38.6286,0,-79.1958	1/1:62:0,62:0:0:62:2214:-199.525,-18.6639,0	1/1:45:0,45:0:0:45:1612:-145.37,-13.5464,0
chr12	25432852	.	T	C	20473.9	PASS	AB=0.498987;ABP=3.03231;AC=50;AF=0.265957;AN=188;AO=1245;CIGAR=1X;DP=4965;DPB=4965;DPRA=1.07062;EPP=2689.15;EPPR=8078.72;GTI=2;LEN=1;MEANALT=1.01923;MQM=59.992;MQMR=59.9863;NS=94;NUMALT=1;ODDS=0.287153;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=44270;QR=132835;RO=3719;RPL=1243;RPP=2689.15;RPPR=8078.72;RPR=2;RUN=1;SAF=1245;SAP=2706.49;SAR=0;SRF=3719;SRP=8078.72;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:95:95,0:95:3388:0:0:0,-28.5978,-305.133	0/1:111:48,63:48:1703:63:2255:-169.798,0,-120.141	0/1:129:68,61:68:2412:61:2175:-157.183,0,-178.502	0/1:41:24,17:24:864:17:604:-42.3484,0,-65.7403	0/1:19:14,5:14:504:5:180:-10.8325,0,-39.9785	0/0:57:57,0:57:2048:0:0:0,-17.1587,-184.592	0/1:58:30,28:30:1076:28:1008:-73.5766,0,-79.6931	0/1:41:23,18:23:824:18:644:-45.9484,0,-62.1411	0/0:47:47,0:47:1664:0:0:0,-14.1484,-150.045	0/1:20:7,13:7:239:13:464:-36.0769,0,-15.8221	0/1:33:20,13:20:716:13:464:-32.1635,0,-54.8337	0/1:29:11,18:11:388:18:636:-48.8382,0,-26.5275	0/1:37:21,16:21:738:16:576:-41.0369,0,-55.6033	0/0:40:40,0:40:1431:0:0:0,-12.0412,-129.087	0/1:36:21,15:21:747:15:540:-38.0995,0,-56.7172	0/0:51:51,0:51:1824:0:0:0,-15.3525,-164.441	0/1:27:10,17:10:356:17:612:-47.2856,0,-24.2534	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:98:98,0:98:3524:0:0:0,-29.5009,-317.368	0/1:58:30,28:30:1076:28:963:-69.5181,0,-79.6931	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/0:41:41,0:41:1457:0:0:0,-12.3422,-131.424	0/1:34:15,19:15:540:19:680:-51.2941,0,-38.7015	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/1:187:83,104:83:2980:104:3700:-276.91,0,-212.138	0/0:116:115,1:115:4132:1:36:0,-31.3212,-368.464	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/1:210:122,88:122:4363:88:3156:-221.048,0,-329.628	0/1:89:43,45:43:1539:45:1616:-118.88,0,-111.947	0/1:66:24,42:24:864:42:1459:-111.731,0,-58.2146	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/1:6:2,4:2:72:4:144:-11.5074,0,-5.03054	0/1:8:6,2:6:216:2:72:-4.42848,0,-17.3823	0/1:128:65,63:65:2318:63:2234:-162.791,0,-170.347	0/0:96:96,0:96:3436:0:0:0,-28.8989,-309.453	0/0:38:38,0:38:1368:0:0:0,-11.4391,-123.421	0/1:4:3,1:3:104:1:36:-2.39415,0,-8.49869	0/0:89:89,0:89:3191:0:0:0,-26.7917,-287.403	0/0:28:28,0:28:1000:0:0:0,-8.42884,-90.3154	0/0:63:63,0:63:2248:0:0:0,-18.9649,-202.584	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/0:25:25,0:25:881:0:0:0,-7.52575,-79.6059	0/1:45:18,27:18:648:27:964:-73.5305,0,-45.1055	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/1:97:63,34:63:2260:34:1216:-80.5467,0,-174.463	0/0:60:60,0:60:2160:0:0:0,-18.0618,-194.667	0/1:81:41,40:41:1463:40:1395:-101.459,0,-107.582	0/0:68:67,1:67:2408:1:36:0,-16.8718,-213.377	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	0/1:67:37,30:37:1313:30:1072:-76.6234,0,-98.3007	0/1:42:17,25:17:608:25:895:-68.2268,0,-42.4088	0/1:9:3,6:3:108:6:212:-16.7155,0,-7.3659	0/1:72:39,33:39:1392:33:1168:-83.7531,0,-103.905	0/0:21:21,0:21:752:0:0:0,-6.32163,-68.0039	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/0:11:11,0:11:383:0:0:0,-3.31133,-34.8032	0/0:34:34,0:34:1200:0:0:0,-10.235,-108.303	0/1:77:41,36:41:1451:36:1257:-90.2507,0,-107.706	0/0:4:4,0:4:140:0:0:0,-1.20412,-12.9446	0/0:130:130,0:130:4647:0:0:0,-39.1339,-418.392	0/0:102:101,1:101:3628:1:36:0,-27.1068,-323.126	0/0:36:36,0:36:1287:0:0:0,-10.8371,-116.133	0/1:54:28,26:28:1008:26:932:-67.9432,0,-74.7807	0/1:74:34,40:34:1209:40:1436:-107.261,0,-86.8379	0/0:66:66,0:66:2363:0:0:0,-19.868,-212.928	0/1:13:6,7:6:216:7:237:-17.7457,0,-15.8771	0/0:32:32,0:32:1152:0:0:0,-9.63296,-103.99	0/1:56:22,34:22:784:34:1212:-92.5286,0,-54.0262	0/1:15:9,6:9:324:6:207:-14.4514,0,-24.9904	0/0:75:75,0:75:2665:0:0:0,-22.5772,-240.093	0/0:34:34,0:34:1197:0:0:0,-10.235,-108.033	0/1:42:21,21:21:752:21:728:-53.1944,0,-55.363	0/0:86:86,0:86:3065:0:0:0,-25.8886,-276.078	0/0:87:87,0:87:3128:0:0:0,-26.1896,-281.745	0/1:43:22,21:22:788:21:756:-55.4229,0,-58.3005	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	0/0:62:62,0:62:2202:0:0:0,-18.6639,-198.444	0/1:66:34,32:34:1220:32:1143:-83.3107,0,-90.2388	0/0:106:106,0:106:3785:0:0:0,-31.9092,-340.845	0/0:77:77,0:77:2724:0:0:0,-23.1793,-245.402	0/1:25:15,10:15:519:10:360:-25.2186,0,-39.511	0/0:35:35,0:35:1229:0:0:0,-10.536,-110.912	0/0:68:66,2:66:2348:2:72:0,-13.6333,-204.743	0/1:22:11,11:11:396:11:392:-28.9974,0,-29.3601	0/0:53:53,0:53:1884:0:0:0,-15.9546,-169.835	0/1:54:27,27:27:955:27:942:-68.8367,0,-70.0092	0/1:20:7,13:7:243:13:468:-36.439,0,-16.1869	0/1:67:29,38:29:1021:38:1341:-100.819,0,-72.0312	0/1:45:16,29:16:576:29:1044:-80.7285,0,-38.6286	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.826	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567
chr12	25436307	.	TTT	TTC,GTC	143970	PASS	AB=0.507843,0.488606;ABP=4.81547,6.8205;AC=141,47;AF=0.75,0.25;AN=188;AO=5106,1663;CIGAR=2M1X,1X1M1X;DP=6795;DPB=6797.33;DPRA=0,1.21822;EPP=11047.2,3605.49;EPPR=0;GTI=0;LEN=1,3;MEANALT=1.85106,2.23636;MQM=59.658,59.8106;MQMR=0;NS=94;NUMALT=2;ODDS=4.25561;PAIRED=0,0;PAIREDR=0;PAO=2.5,4.5;PQA=90,162;PQR=0;PRO=0;QA=181630,58094;QR=0;RO=0;RPL=5101,1662;RPP=11047.2,3605.49;RPPR=0;RPR=5,1;RUN=1,1;SAF=5106,1663;SAP=11090.5,3614.17;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:48:0,48,0:0:0:48,0:1704,0:-153.599,-14.4494,0,-153.599,-14.4494,-153.599	1/1:31:0,31,0:0:0:31,0:1099,0:-99.1746,-9.33193,0,-99.1746,-9.33193,-99.1746	1/2:79:0,50,28:0:0:50,28:1781,998:-226.525,-81.424,-66.3725,-145.174,0,-136.745	1/2:262:0,130,131:0:0:130,131:4648,4519:-746.045,-367.051,-327.917,-378.986,0,-339.551	1/2:53:0,29,24:0:0:29,24:1032,849:-153.608,-69.5048,-60.775,-84.4574,0,-77.2327	1/2:43:0,15,28:0:0:15,28:540,985:-124.592,-80.5336,-76.0181,-44.4149,0,-35.986	1/1:76:0,73,2:0:0:73,2:2609,72:-234.696,-21.9752,0,-228.821,-16.1004,-228.219	1/2:100:0,54,46:0:0:54,46:1927,1581:-285.774,-128.707,-112.451,-157.417,0,-143.57	1/2:81:0,48,33:0:0:48,33:1688,1145:-230.769,-93.4189,-78.9695,-137.698,0,-127.764	1/1:45:0,45,0:0:0:45,0:1607,0:-144.919,-13.5464,0,-144.919,-13.5464,-144.919	1/2:31:0,21,10:0:0:21,10:743,342:-88.6204,-28.096,-21.7743,-60.8701,0,-57.8598	1/2:86:0,47,39:0:0:47,39:1673,1342:-245.237,-109.015,-94.8667,-136.57,0,-124.83	1/2:51:0,19,32:0:0:19,32:672,1124:-146.519,-91.8293,-86.1097,-55.0423,0,-45.4093	1/2:30:0,15,15:0:0:15,15:540,515:-86.2273,-42.1592,-37.6438,-44.4195,0,-39.9041	1/1:52:0,52,0:0:0:52,0:1860,0:-167.661,-15.6536,0,-167.661,-15.6536,-167.661	1/2:36:0,18,18:0:0:18,18:648,648:-106.071,-53.1974,-47.7789,-53.2333,0,-47.8148	1/1:20:0,20,0:0:0:20,0:720,0:-65.0823,-6.0206,0,-65.0823,-6.0206,-65.0823	1/2:12:0,2,10:0:0:2,10:72,358:-35.4277,-29.5526,-28.9505,-6.23466,0,-3.22436	1/1:16:0,16,0:0:0:16,0:576,0:-52.175,-4.81648,0,-52.175,-4.81648,-52.175	1/1:140:0,139,0:0:0:139,0:4931,0:-443.648,-41.8432,0,-443.648,-41.8432,-443.648	1/2:101:0,51,49:0:0:51,49:1789,1718:-285.287,-139.7,-124.347,-145.578,0,-130.828	1/1:117:0,116,1:0:0:116,1:4121,28:-370.796,-34.9195,0,-368.578,-32.4208,-368.277	1/1:102:0,102,0:0:0:102,0:3606,0:-324.748,-30.7051,0,-324.748,-30.7051,-324.748	1/2:60:0,30,29:0:0:30,29:1072,1015:-169.979,-82.5707,-73.5398,-87.402,0,-78.6721	1/1:90:0,89,0:0:0:89,0:3149,0:-283.262,-26.7917,0,-283.262,-26.7917,-283.262	1/2:192:0,100,92:0:0:100,92:3562,3189:-549.386,-259.15,-229.047,-290.227,0,-262.533	1/1:186:0,184,1:0:0:184,1:6544,36:-588.616,-55.3895,0,-585.679,-52.3746,-585.378	1/1:8:0,8,0:0:0:8,0:284,0:-25.9034,-2.40824,0,-25.9034,-2.40824,-25.9034	1/2:224:0,93,131:0:0:93,131:3326,4583:-644.414,-373.205,-345.21,-271.562,0,-232.127	1/2:132:0,63,68:0:0:63,68:2223,2368:-373.639,-192.626,-173.661,-181.083,0,-160.613	1/2:138:0,67,70:0:0:67,70:2387,2409:-390.285,-195.718,-175.549,-194.646,0,-173.574	1/2:4:0,1,3:0:0:1,3:36,100:-11.3708,-8.42677,-8.12574,-3.29724,0,-2.39415	1/1:24:0,24,0:0:0:24,0:855,0:-77.2686,-7.22472,0,-77.2686,-7.22472,-77.2686	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/2:6:0,4,2:0:0:4,2:140,72:-17.6186,-6.23466,-5.03054,-11.7405,0,-11.1384	1/2:30:0,10,20:0:0:10,20:352,716:-87.4014,-58.7473,-55.737,-29.0079,0,-22.9873	1/2:122:0,63,57:0:0:63,57:2232,2009:-345.461,-163.636,-144.671,-181.89,0,-164.731	1/1:114:0,113,0:0:0:113,0:4011,0:-360.956,-34.0164,0,-360.956,-34.0164,-360.956	1/1:20:0,20,0:0:0:20,0:711,0:-64.2932,-6.0206,0,-64.2932,-6.0206,-64.2932	1/1:1:0,1,0:0:0:1,0:36,0:-3.59827,-0.30103,0,-3.59827,-0.30103,-3.59827	1/1:152:0,151,1:0:0:151,1:5364,28:-482.537,-45.4555,0,-480.319,-42.9571,-480.018	1/1:13:0,13,0:0:0:13,0:468,0:-42.4534,-3.91339,0,-42.4534,-3.91339,-42.4534	1/1:164:0,164,0:0:0:164,0:5836,0:-525.278,-49.3689,0,-525.278,-49.3689,-525.278	1/1:34:0,34,0:0:0:34,0:1212,0:-109.384,-10.235,0,-109.384,-10.235,-109.384	1/1:39:0,38,0:0:0:38,0:1352,0:-121.62,-11.4391,0,-121.62,-11.4391,-121.62	1/2:115:0,58,57:0:0:58,57:2053,1991:-329.517,-162.296,-144.836,-167.573,0,-150.415	1/1:95:0,95,0:0:0:95,0:3385,0:-304.668,-28.5979,0,-304.668,-28.5979,-304.668	1/2:140:0,75,64:0:0:75,64:2660,2248:-399.805,-183.094,-160.517,-216.842,0,-197.576	1/1:94:0,94,0:0:0:94,0:3352,0:-301.895,-28.2968,0,-301.895,-28.2968,-301.895	1/2:92:0,43,49:0:0:43,49:1548,1729:-267.453,-141.142,-128.198,-126.668,0,-111.918	1/1:90:0,89,0:0:0:89,0:3170,0:-285.242,-26.7917,0,-285.242,-26.7917,-285.242	1/2:3:0,1,2:0:0:1,2:36,72:-9.17208,-6.23466,-5.93363,-3.29724,0,-2.69518	1/2:84:0,57,27:0:0:57,27:2044,962:-245.456,-78.7624,-61.6037,-167.051,0,-158.923	1/2:76:0,44,32:0:0:44,32:1576,1110:-219.106,-90.5714,-77.326,-128.886,0,-119.253	1/2:19:0,7,12:0:0:7,12:248,430:-55.6248,-35.4277,-33.3205,-20.5526,0,-16.9403	1/2:110:0,74,36:0:0:74,36:2605,1273:-316.03,-104.036,-81.7593,-212.347,0,-201.51	1/1:56:0,55,0:0:0:55,0:1963,0:-176.655,-16.5567,0,-176.655,-16.5567,-176.655	1/2:7:0,3,4:0:0:3,4:108,144:-20.9217,-12.1095,-11.2064,-9.17208,0,-7.96796	1/1:14:0,14,0:0:0:14,0:504,0:-45.6981,-4.21442,0,-45.6981,-4.21442,-45.6981	1/1:62:0,62,0:0:0:62,0:2210,0:-199.138,-18.6639,0,-199.138,-18.6639,-199.138	1/2:76:0,35,41:0:0:35,41:1219,1463:-218.722,-119.601,-109.065,-99.4734,0,-87.1312	1/1:2:0,2,0:0:0:2,0:72,0:-6.80663,-0.60206,0,-6.80663,-0.60206,-6.80663	1/1:117:0,116,1:0:0:116,1:4118,36:-370.435,-34.9195,0,-367.497,-31.6222,-367.196	1/1:107:0,107,0:0:0:107,0:3805,0:-342.648,-32.2102,0,-342.648,-32.2102,-342.648	1/1:47:0,43,4:0:0:43,4:1544,144:-138.266,-12.9443,0,-126.516,-0.834793,-125.312	1/2:68:0,39,29:0:0:39,29:1386,1026:-196.505,-83.5622,-71.822,-112.938,0,-104.208	1/2:105:0,47,58:0:0:47,58:1688,2036:-303.708,-166.05,-151.902,-138.013,0,-120.553	1/1:132:0,131,1:0:0:131,1:4692,36:-422.079,-39.4349,0,-419.141,-36.1377,-418.84	1/2:12:0,8,4:0:0:8,4:288,144:-35.6088,-12.1095,-9.70126,-23.8592,0,-22.655	1/1:36:0,36,0:0:0:36,0:1271,0:-114.634,-10.8371,0,-114.634,-10.8371,-114.634	1/2:44:0,29,15:0:0:29,15:1031,530:-127.536,-43.5168,-34.787,-84.3727,0,-79.8573	1/2:17:0,8,9:0:0:8,9:280,316:-48.8451,-26.069,-23.6608,-23.1264,0,-20.4171	1/1:196:0,193,0:0:0:193,0:6849,0:-615.185,-58.0988,0,-615.185,-58.0988,-615.185	1/1:62:0,62,0:0:0:62,0:2219,0:-199.869,-18.6639,0,-199.869,-18.6639,-199.869	1/2:123:0,61,62:0:0:61,62:2168,2134:-348.798,-173.599,-155.236,-175.489,0,-156.825	1/1:114:0,114,0:0:0:114,0:4073,0:-366.71,-34.3174,0,-366.71,-34.3174,-366.71	1/1:83:0,83,0:0:0:83,0:2950,0:-265.702,-24.9855,0,-265.702,-24.9855,-265.702	1/2:58:0,30,28:0:0:30,28:1067,965:-165.601,-78.7194,-69.6885,-87.2317,0,-78.8029	1/2:7:0,3,4:0:0:3,4:108,142:-20.7395,-11.9251,-11.022,-9.17208,0,-7.96796	1/1:58:0,58,0:0:0:58,0:2076,0:-187.03,-17.4597,0,-187.03,-17.4597,-187.03	1/2:80:0,45,34:0:0:45,34:1599,1189:-226.741,-96.4479,-82.9016,-130.333,0,-120.098	1/1:190:0,188,0:0:0:188,0:6705,0:-603.033,-56.5936,0,-603.033,-56.5936,-603.033	1/1:45:0,44,0:0:0:44,0:1560,0:-140.273,-13.2453,0,-140.273,-13.2453,-140.273	1/2:45:0,20,23:0:0:20,23:704,798:-122.241,-64.9273,-58.9067,-57.3741,0,-50.4504	1/1:39:0,39,0:0:0:39,0:1367,0:-123.325,-11.7402,0,-123.325,-11.7402,-123.325	1/1:89:0,88,1:0:0:88,1:3112,36:-279.945,-26.4906,0,-277.007,-23.1934,-276.706	1/2:17:0,10,7:0:0:10,7:330,244:-46.8571,-20.1916,-17.1813,-27.0063,0,-24.8991	1/1:47:0,47,0:0:0:47,0:1687,0:-150.719,-14.1484,0,-150.719,-14.1484,-150.719	1/2:61:0,23,38:0:0:23,38:828,1329:-175.983,-108.463,-101.539,-67.8755,0,-56.4364	1/2:20:0,11,9:0:0:11,9:396,312:-58.0243,-25.7054,-22.3941,-32.6714,0,-29.9621	1/2:83:0,34,49:0:0:34,49:1199,1708:-236.874,-139.247,-129.012,-97.9779,0,-83.2274	1/2:44:0,21,23:0:0:21,23:748,798:-126.181,-65.2115,-58.8899,-61.3209,0,-54.3972	1/1:80:0,80,0:0:0:80,0:2862,0:-257.812,-24.0824,0,-257.812,-24.0824,-257.812	1/1:64:0,64,0:0:0:64,0:2249,0:-202.607,-19.2659,0,-202.607,-19.2659,-202.607
chr12	25444096	.	TGGTT	GGGTT,GGGTC	204085	PASS	AB=0.4892,0.503189;ABP=7.93531,3.43959;AC=141,47;AF=0.75,0.25;AN=188;AO=7083,2456;CIGAR=1X4M,1X3M1X;DP=9602;DPB=9602.8;DPRA=0,1.15275;EPP=15383.5,5180.95;EPPR=13.8677;GTI=0;LEN=1,5;MEANALT=2.12766,2.66038;MQM=59.9953,59.3054;MQMR=60;NS=94;NUMALT=2;ODDS=4.04452;PAIRED=0,0;PAIREDR=0;PAO=2,2;PQA=54,54;PQR=0;PRO=0;QA=252391,86306;QR=177;RO=5;RPL=7082,2438;RPP=15374.9,5180.95;RPPR=13.8677;RPR=1,18;RUN=1,1;SAF=7082,2456;SAP=15374.9,5336.15;SAR=1,0;SRF=5;SRP=13.8677;SRR=0;TYPE=snp,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/1:65:0,65,0:0:0:65,0:2327,0:-209.689,-19.567,0,-209.689,-19.567,-209.689	1/1:83:0,83,0:0:0:83,0:2972,0:-267.713,-24.9855,0,-267.713,-24.9855,-267.713	1/2:126:0,66,59:0:0:66,59:2350,2080:-360.864,-169.327,-149.459,-191.619,0,-173.859	1/2:226:0,117,108:0:0:117,108:4159,3770:-645.311,-306.39,-271.169,-338.913,0,-306.402	1/2:77:0,43,33:0:0:43,33:1531,1145:-217.818,-93.0308,-80.0865,-124.778,0,-114.844	1/2:47:0,27,18:0:0:27,18:968,633:-130.474,-51.5193,-43.3915,-78.9498,0,-73.5313	1/1:184:0,184,0:0:0:184,0:6584,0:-592.639,-55.3895,0,-592.639,-55.3895,-592.639	1/2:88:0,34,54:0:0:34,54:1224,1870:-251.951,-152.073,-141.838,-100.232,0,-83.9764	1/2:80:0,42,38:0:0:42,38:1508,1340:-232.475,-109.46,-96.8163,-123.371,0,-111.932	1/1:81:0,81,0:0:0:81,0:2908,0:-261.937,-24.3834,0,-261.937,-24.3834,-261.937	1/2:67:0,37,29:0:0:37,29:1323,1026:-191.39,-83.5123,-72.3742,-107.873,0,-99.1436	1/2:71:0,39,32:0:0:39,32:1361,1100:-200.371,-89.6709,-77.9307,-111.046,0,-101.413	1/2:71:0,41,29:0:0:41,29:1472,1026:-203.699,-83.6187,-71.2765,-120.181,0,-111.452	1/2:98:0,52,44:0:0:52,44:1856,1560:-278.398,-127.087,-111.433,-151.306,0,-138.061	1/1:57:0,57,0:0:0:57,0:2026,0:-182.611,-17.1587,0,-182.611,-17.1587,-182.611	1/2:51:0,26,25:0:0:26,25:913,886:-146.838,-72.5334,-64.7066,-74.6572,0,-67.1315	1/1:70:0,69,0:0:0:69,0:2428,0:-218.355,-20.7711,0,-218.355,-20.7711,-218.355	1/2:51:0,31,20:0:0:31,20:1112,705:-148.458,-57.7535,-48.4216,-91.0594,0,-85.0388	1/1:39:0,38,1:0:0:38,1:1339,35:-120.459,-11.4391,0,-117.612,-8.24154,-117.311	1/1:180:0,177,2:0:0:177,2:6297,72:-566.488,-53.2823,0,-560.613,-47.3609,-560.011	1/2:166:0,67,99:0:0:67,99:2396,3454:-476.487,-281.114,-260.945,-195.727,0,-165.925	1/1:134:0,134,0:0:0:134,0:4745,0:-427.212,-40.338,0,-427.212,-40.338,-427.212	1/1:55:1,54,0:1:36:54,0:1940,0:-171.278,-12.9584,0,-171.579,-16.2556,-174.516	1/2:121:0,72,49:0:0:72,49:2575,1714:-349.704,-139.732,-118.058,-210.325,0,-195.574	1/1:85:0,85,0:0:0:85,0:3056,0:-275.268,-25.5876,0,-275.268,-25.5876,-275.268	1/2:383:0,188,194:0:0:188,194:6722,6844:-1105.37,-557.262,-500.668,-548.121,0,-489.721	1/1:214:0,209,2:0:0:209,2:7439,69:-669.256,-62.9153,0,-663.651,-57.2797,-663.049	1/1:33:0,33,0:0:0:33,0:1171,0:-105.697,-9.93399,0,-105.697,-9.93399,-105.697	1/2:312:0,142,168:0:0:142,168:5045,5900:-891.258,-480.164,-437.417,-411.089,0,-360.516	1/2:117:0,66,50:0:0:66,50:2362,1763:-336.063,-143.448,-123.58,-192.613,0,-177.561	1/2:138:0,55,80:0:0:55,80:1972,2820:-390.448,-229.605,-213.049,-160.898,0,-136.816	1/2:3:0,2,1:0:0:2,1:72,36:-9.17208,-3.29724,-2.69518,-6.23466,0,-5.93363	1/1:16:0,16,0:0:0:16,0:567,0:-51.3607,-4.81648,0,-51.3607,-4.81648,-51.3607	1/1:6:0,6,0:0:0:6,0:212,0:-19.4248,-1.80618,0,-19.4248,-1.80618,-19.4248	1/2:12:0,7,5:0:0:7,5:239,179:-34.3398,-14.9552,-12.848,-19.7355,0,-18.2304	1/2:16:0,12,4:0:0:12,4:428,144:-46.9969,-12.1095,-8.49714,-35.2464,0,-34.0423	1/2:210:0,106,104:0:0:106,104:3763,3671:-605.796,-299.19,-267.281,-306.959,0,-275.652	1/1:95:0,95,0:0:0:95,0:3382,0:-304.596,-28.5979,0,-304.596,-28.5979,-304.596	1/1:73:0,72,0:0:0:72,0:2554,0:-229.859,-21.6742,0,-229.859,-21.6742,-229.859	1/1:5:0,5,0:0:0:5,0:180,0:-16.5521,-1.50515,0,-16.5521,-1.50515,-16.5521	1/1:227:0,225,0:0:0:225,0:8016,0:-721.182,-67.7318,0,-721.182,-67.7318,-721.182	1/1:35:0,34,0:0:0:34,0:1207,0:-108.634,-10.235,0,-108.634,-10.235,-108.634	1/1:134:0,133,1:0:0:133,1:4772,36:-429.276,-40.037,0,-426.339,-36.7397,-426.038	1/1:79:0,79,0:0:0:79,0:2824,0:-254.399,-23.7814,0,-254.399,-23.7814,-254.399	1/1:68:0,67,0:0:0:67,0:2349,0:-211.307,-20.169,0,-211.307,-20.169,-211.307	1/2:143:0,92,50:0:0:92,50:3267,1759:-409.353,-143.149,-115.454,-266.198,0,-251.147	1/1:66:0,66,0:0:0:66,0:2360,0:-212.659,-19.868,0,-212.659,-19.868,-212.659	1/2:217:2,116,96:2:72:116,96:4139,3346:-602.549,-265.727,-236.682,-331.588,0,-308.564	1/1:109:0,108,0:0:0:108,0:3868,0:-347.955,-32.5112,0,-347.955,-32.5112,-347.955	1/2:130:0,44,86:0:0:44,86:1572,3049:-376.23,-248.06,-234.815,-128.526,0,-102.638	1/1:206:0,205,0:0:0:205,0:7359,0:-662.084,-61.7112,0,-662.084,-61.7112,-662.084	1/2:5:0,2,3:0:0:2,3:72,102:-14.4886,-8.60569,-8.00363,-6.23466,0,-5.33157	1/2:162:0,78,81:0:0:78,81:2789,2864:-460.44,-233.025,-209.544,-227.471,0,-203.087	1/2:39:0,25,14:0:0:25,14:883,498:-112.833,-40.9264,-33.4007,-72.2609,0,-68.0465	1/2:11:0,7,3:0:0:7,3:252,108:-29.3742,-8.81225,-6.70504,-20.5619,0,-19.6588	1/2:165:0,65,100:0:0:65,100:2315,3504:-473.914,-285.225,-265.658,-189.043,0,-158.94	1/1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chr12	25444237	.	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chr12	25447324	.	T	C	217721	PASS	AB=0.48413;ABP=17.9661;AC=140;AF=0.744681;AN=188;AO=10419;CIGAR=1X;DP=13973;DPB=13973;DPRA=0;EPP=22627.6;EPPR=7700.88;GTI=0;LEN=1;MEANALT=1.08511;MQM=59.984;MQMR=59.9867;NS=94;NUMALT=1;ODDS=7.4567;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=370597;QR=126906;RO=3545;RPL=10419;RPP=22627.6;RPPR=7700.88;RPR=0;RUN=1;SAF=10419;SAP=22627.6;SAR=0;SRF=3545;SRP=7700.88;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:85:0,85:0:0:85:3039:-273.74,-25.5876,0	1/1:123:0,123:0:0:123:4414:-397.423,-37.0267,0	0/1:278:132,146:132:4732:146:5201:-384.542,0,-342.34	0/1:297:156,139:156:5589:139:4953:-356.755,0,-413.967	0/1:121:55,66:55:1976:66:2367:-176.863,0,-141.69	0/1:97:60,37:60:2160:37:1332:-90.9825,0,-165.467	1/1:144:0,144:0:0:144:5141:-462.828,-43.3483,0	0/1:204:115,89:115:4116:89:3179:-224.924,0,-309.024	0/1:201:104,97:104:3728:97:3411:-246.696,0,-275.214	1/1:118:0,118:0:0:118:4195:-377.707,-35.5215,0	0/1:91:43,48:43:1540:48:1705:-126.34,0,-111.499	0/1:191:111,80:111:3979:80:2819:-196.452,0,-300.802	0/1:125:63,62:63:2256:62:2193:-160.005,0,-165.674	0/1:71:32,39:32:1148:39:1381:-103.214,0,-82.2567	1/1:123:0,123:0:0:123:4372:-393.654,-37.0267,0	0/1:98:42,56:42:1496:56:1991:-149.963,0,-105.434	1/1:49:0,49:0:0:49:1747:-157.514,-14.7505,0	0/1:43:28,15:28:1008:15:536:-35.6305,0,-78.0921	1/1:59:0,59:0:0:59:2095:-188.819,-17.7608,0	1/1:422:1,421:1:36:421:14987:-1344.97,-123.436,0	0/1:278:129,149:129:4612:149:5262:-390.032,0,-331.552	1/1:215:0,215:0:0:215:7621:-685.931,-64.7215,0	1/1:211:0,211:0:0:211:7492:-674.323,-63.5173,0	0/1:114:60,54:60:2156:54:1931:-139.749,0,-159.99	1/1:188:0,188:0:0:188:6696:-602.715,-56.5936,0	0/1:322:155,167:155:5549:167:5958:-439.396,0,-402.601	1/1:378:0,378:0:0:378:13405:-1206.25,-113.789,0	1/1:56:0,56:0:0:56:1997:-180.003,-16.8577,0	0/1:412:228,183:228:8187:183:6464:-457.765,0,-612.756	0/1:215:113,102:113:4006:102:3641:-263.173,0,-296.005	0/1:118:69,49:69:2468:49:1740:-121.36,0,-186.853	0/1:22:14,8:14:504:8:279:-18.8249,0,-39.0754	1/1:43:0,43:0:0:43:1512:-136.37,-12.9443,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:25:12,13:12:428:13:455:-33.7562,0,-31.3331	0/1:26:12,14:12:432:14:496:-37.1475,0,-31.3944	0/1:316:164,152:164:5876:152:5441:-394.692,0,-433.825	1/1:213:0,213:0:0:213:7610:-684.938,-64.1194,0	1/1:83:0,83:0:0:83:2947:-265.465,-24.9855,0	0/1:7:5,2:5:176:2:72:-4.72951,0,-14.0778	1/1:143:0,143:0:0:143:5096:-458.784,-43.0473,0	1/1:79:0,79:0:0:79:2805:-252.689,-23.7814,0	1/1:303:0,302:0:0:302:10694:-962.012,-90.9111,0	1/1:101:1,100:1:36:100:3520:-313.41,-26.8058,0	1/1:90:1,89:1:36:89:3143:-279.495,-23.4944,0	0/1:115:58,57:58:2069:57:2048:-149.973,0,-151.86	1/1:207:1,206:1:36:206:7310:-654.356,-58.7149,0	0/1:213:115,98:115:4110:98:3498:-250.912,0,-305.965	1/1:119:0,119:0:0:119:4263:-383.847,-35.8226,0	0/1:126:66,60:66:2359:60:2152:-156.017,0,-174.638	1/1:118:0,118:0:0:118:4157:-374.312,-35.5215,0	0/1:14:6,8:6:216:8:288:-22.053,0,-15.5761	0/1:368:183,184:183:6576:184:6578:-481.412,0,-481.229	0/1:89:51,38:51:1820:38:1341:-94.1886,0,-137.29	0/1:19:10,9:10:360:9:324:-23.7863,0,-27.0247	0/1:319:170,149:170:6089:149:5348:-385.423,0,-452.081	1/1:107:0,107:0:0:107:3813:-343.368,-32.2102,0	0/1:36:17,19:17:612:19:684:-51.0532,0,-44.5764	1/1:15:0,15:0:0:15:540:-48.9365,-4.51545,0	1/1:133:0,133:0:0:133:4737:-426.491,-40.037,0	0/1:165:81,84:81:2896:84:3004:-220.921,0,-211.206	1/1:12:0,12:0:0:12:432:-39.2212,-3.61236,0	1/1:240:0,240:0:0:240:8575:-771.746,-72.2472,0	1/1:207:0,207:0:0:207:7388:-664.966,-62.3132,0	1/1:93:7,86:7:248:86:3040:-251.165,-5.3316,0	0/1:120:62,58:62:2224:58:2064:-149.908,0,-164.301	0/1:226:99,127:99:3541:127:4510:-338.035,0,-250.864	1/1:316:4,311:4:144:311:11102:-985.755,-81.8707,0	0/1:73:47,26:47:1668:26:917:-60.8703,0,-128.432	1/1:97:0,97:0:0:97:3453:-310.982,-29.1999,0	0/1:77:29,48:29:1040:48:1724:-132.266,0,-70.7351	0/1:15:7,8:7:248:8:275:-20.568,0,-18.1487	1/1:255:1,254:1:36:254:9009:-807.195,-73.1644,0	1/1:138:0,138:0:0:138:4900:-441.151,-41.5421,0	0/1:243:116,126:116:4147:126:4449:-327.335,0,-300.204	1/1:267:0,267:0:0:267:9547:-859.185,-80.375,0	1/1:149:0,149:0:0:149:5282:-475.516,-44.8535,0	0/1:105:50,55:50:1800:55:1963:-145.336,0,-130.674	0/1:29:12,17:12:432:17:601:-45.6885,0,-30.4913	1/1:161:0,161:0:0:161:5761:-518.604,-48.4658,0	0/1:147:70,77:70:2516:77:2743:-202.861,0,-182.44	1/1:369:0,368:0:0:368:13009:-1170.27,-110.779,0	1/1:101:0,101:0:0:101:3585:-322.858,-30.404,0	0/1:98:61,37:61:2179:37:1323:-89.8704,0,-166.875	1/1:67:0,67:0:0:67:2383:-214.728,-20.169,0	1/1:211:6,205:6:216:205:7309:-638.069,-43.7268,0	0/1:40:17,23:17:612:23:824:-62.4421,0,-43.3722	1/1:133:0,133:0:0:133:4745:-427.208,-40.037,0	0/1:133:71,62:71:2527:62:2199:-158.138,0,-187.645	0/1:75:40,34:40:1428:34:1205:-86.0999,0,-106.182	0/1:185:85,100:85:3048:100:3529:-262.131,0,-218.859	0/1:135:96,39:96:3407:39:1400:-85.6601,0,-266.207	1/1:232:1,231:1:36:231:8175:-732.167,-66.2407,0	1/1:159:1,158:1:36:158:5612:-501.605,-44.2655,0
chr12	25447339	.	T	C	57737.4	PASS	AB=0.515296;ABP=16.6944;AC=48;AF=0.255319;AN=188;AO=3499;CIGAR=1X;DP=13818;DPB=13818;DPRA=0.96957;EPP=7600.99;EPPR=22397.4;GTI=0;LEN=1;MEANALT=1.06667;MQM=59.9977;MQMR=59.9861;NS=94;NUMALT=1;ODDS=8.44157;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=123184;QR=367254;RO=10313;RPL=3499;RPP=7600.99;RPPR=22397.4;RPR=0;RUN=1;SAF=3499;SAP=7600.99;SAR=0;SRF=10313;SRP=22397.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:85:85,0:85:3040:0:0:0,-25.5875,-273.83	0/0:120:120,0:120:4281:0:0:0,-36.1236,-385.467	0/1:273:145,127:145:5188:127:4518:-324.547,0,-384.82	0/1:289:139,150:139:4933:150:5284:-388.7,0,-357.126	0/1:121:64,57:64:2270:57:2032:-146.728,0,-168.134	0/1:95:35,60:35:1234:60:2086:-159.407,0,-82.7648	0/0:144:143,1:143:5101:1:36:0,-39.75,-455.635	0/1:201:91,110:91:3244:110:3878:-288.707,0,-231.673	0/1:199:97,102:97:3444:102:3612:-265.382,0,-250.268	0/0:115:115,0:115:4058:0:0:0,-34.6184,-365.218	0/1:88:45,43:45:1604:43:1488:-107.717,0,-118.16	0/1:184:77,107:77:2749:107:3721:-279.705,0,-192.261	0/1:121:59,62:59:2095:62:2175:-159.59,0,-152.395	0/1:71:38,33:38:1364:33:1125:-80.1774,0,-101.688	0/0:121:121,0:121:4281:0:0:0,-36.4246,-385.466	0/1:99:56,43:56:2000:43:1486:-104.227,0,-150.472	0/0:48:48,0:48:1715:0:0:0,-14.4494,-154.635	0/1:41:14,27:14:489:27:938:-72.3896,0,-31.9967	0/0:60:60,0:60:2120:0:0:0,-18.0618,-191.067	0/0:429:429,0:429:15289:0:0:0,-129.142,-1375.73	0/1:275:146,128:146:5219:128:4508:-323.167,0,-387.135	0/0:217:217,0:217:7726:0:0:0,-65.3235,-695.375	0/0:213:213,0:213:7510:0:0:0,-64.1194,-675.948	0/1:113:53,60:53:1873:60:2094:-154.71,0,-134.83	0/0:179:179,0:179:6403:0:0:0,-53.8844,-576.358	0/1:328:173,155:173:6140:155:5481:-394.682,0,-453.966	0/0:371:371,0:371:13243:0:0:0,-111.682,-1191.67	0/0:54:54,0:54:1927:0:0:0,-16.2556,-173.706	0/1:406:178,227:178:6283:227:8007:-598.385,0,-443.292	0/1:206:95,111:95:3364:111:3952:-293.859,0,-240.965	0/1:117:49,68:49:1737:68:2406:-181.575,0,-121.392	0/1:21:8,13:8:288:13:432:-32.8755,0,-19.9458	0/0:42:42,0:42:1478:0:0:0,-12.6433,-133.313	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:24:13,11:13:464:11:396:-28.758,0,-34.8728	0/1:28:14,14:14:500:14:495:-36.4542,0,-36.9073	0/1:312:150,162:150:5351:162:5702:-419.379,0,-387.8	0/0:210:210,0:210:7487:0:0:0,-63.2163,-673.874	0/0:84:84,0:84:3016:0:0:0,-25.2865,-271.67	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	0/0:140:140,0:140:5000:0:0:0,-42.1442,-450.149	0/0:78:78,0:78:2777:0:0:0,-23.4803,-250.17	0/0:299:298,0:298:10619:0:0:0,-89.7069,-955.263	0/0:103:102,1:102:3637:1:32:0,-27.8068,-324.335	0/0:87:86,1:86:3053:1:36:0,-22.5913,-271.401	0/1:111:54,57:54:1890:57:1999:-146.768,0,-136.96	0/0:204:203,1:203:7267:1:36:0,-57.8118,-650.482	0/1:211:94,117:94:3345:117:4134:-308.728,0,-237.749	0/0:116:115,1:115:4111:1:32:0,-31.7202,-366.975	0/1:125:60,65:60:2138:65:2270:-166.93,0,-155.058	0/0:116:116,0:116:4136:0:0:0,-34.9195,-372.423	0/1:13:8,5:8:264:5:171:-11.8121,0,-20.1669	0/1:361:184,177:184:6560:177:6299:-458.333,0,-481.811	0/1:85:35,50:35:1241:50:1754:-132.552,0,-86.405	0/1:17:9,8:9:320:8:280:-20.4218,0,-24.0248	0/1:317:149,168:149:5322:168:5948:-440.004,0,-383.687	0/0:106:106,0:106:3804:0:0:0,-31.9092,-342.557	0/1:36:19,17:19:680:17:601:-43.5813,0,-50.6921	0/0:15:15,0:15:540:0:0:0,-4.51545,-48.9365	0/0:131:131,0:131:4670:0:0:0,-39.4349,-420.462	0/1:164:82,81:82:2927:81:2820:-204.611,0,-214.237	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/0:241:241,0:241:8551:0:0:0,-72.5482,-769.59	0/0:206:203,3:203:7259:3:108:0,-51.937,-643.288	0/0:93:86,7:86:3017:7:244:0,-5.69693,-249.457	0/1:120:58,62:58:2072:62:2180:-160.338,0,-150.627	0/1:226:125,101:125:4479:101:3561:-252.665,0,-335.245	0/0:311:307,4:307:10934:4:144:0,-80.3067,-970.641	0/1:73:26,47:26:928:47:1648:-126.63,0,-61.8631	0/0:98:98,0:98:3480:0:0:0,-29.5009,-313.411	0/1:78:49,29:49:1751:29:1010:-67.7284,0,-134.393	0/1:14:6,8:6:216:8:275:-20.8691,0,-15.5761	0/0:257:256,1:256:9137:1:36:0,-73.7664,-818.707	0/0:138:138,0:138:4946:0:0:0,-41.5421,-445.288	0/1:230:119,111:119:4245:111:3884:-280.516,0,-312.765	0/0:268:268,0:268:9593:0:0:0,-80.676,-863.322	0/0:146:146,0:146:5203:0:0:0,-43.9504,-468.408	0/1:105:56,49:56:1977:49:1698:-121.493,0,-146.595	0/1:28:16,12:16:576:12:428:-30.43,0,-43.7461	0/0:162:162,0:162:5800:0:0:0,-48.7669,-522.114	0/1:141:74,67:74:2634:67:2365:-170.66,0,-194.861	0/0:371:370,0:370:13145:0:0:0,-111.381,-1182.42	0/0:100:99,1:99:3543:1:36:0,-26.5047,-315.48	0/1:98:38,60:38:1360:60:2143:-163.636,0,-93.1997	0/0:68:68,0:68:2429:0:0:0,-20.47,-218.864	0/0:207:200,7:200:7089:7:240:0,-40.3785,-616.115	0/1:40:23,17:23:824:17:592:-41.5652,0,-62.4421	0/0:132:132,0:132:4693:0:0:0,-39.736,-422.532	0/1:131:62,69:62:2185:69:2398:-176.641,0,-157.477	0/1:73:34,39:34:1212:39:1369:-101.531,0,-87.3239	0/1:186:102,84:102:3616:84:2977:-212.173,0,-269.655	0/1:131:36,95:36:1296:95:3368:-263.904,0,-77.509	0/0:223:223,0:223:7941:0:0:0,-67.1297,-714.67	0/0:159:158,1:158:5598:1:36:0,-44.2655,-500.347
chr12	25447376	.	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chr12	25476493	.	G	A	20995.1	PASS	AB=0.549643;ABP=68.983;AC=49;AF=0.260638;AN=188;AO=1704;CIGAR=1X;DP=5710;DPB=5710;DPRA=1.24431;EPP=3703.2;EPPR=8695.41;GTI=2;LEN=1;MEANALT=1;MQM=32.0528;MQMR=58.3033;NS=94;NUMALT=1;ODDS=0.6621;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61033;QR=143469;RO=4003;RPL=1704;RPP=3703.2;RPPR=8695.41;RPR=0;RUN=1;SAF=0;SAP=3703.2;SAR=1704;SRF=0;SRP=8695.41;SRR=4003;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:48:48,0:48:1709:0:0:0,-14.4494,-153.953	0/0:38:38,0:38:1364:0:0:0,-11.4391,-122.958	0/1:184:83,101:83:2968:101:3628:-207.673,0,-211.122	0/1:132:68,64:68:2432:64:2292:-142.824,0,-178.574	0/1:26:11,15:11:396:15:540:-32.6997,0,-28.1541	0/1:12:5,7:5:180:7:252:-14.0668,0,-12.9351	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.033	0/1:80:38,42:38:1364:42:1512:-85.7821,0,-97.8177	0/1:79:45,34:45:1620:34:1216:-65.0056,0,-121.993	0/0:75:75,0:75:2684:0:0:0,-22.5772,-241.502	0/1:43:22,21:22:777:21:756:-45.9055,0,-57.3051	0/1:100:53,47:53:1908:47:1688:-92.3842,0,-141.668	0/1:95:53,42:53:1896:42:1504:-80.5298,0,-141.836	0/1:46:27,19:27:968:19:676:-37.0236,0,-72.1945	0/0:89:88,1:88:3156:1:36:0,-23.2249,-280.364	0/1:66:32,34:32:1148:34:1224:-71.1624,0,-83.608	0/0:26:26,0:26:936:0:0:0,-7.82678,-84.3907	0/1:31:12,19:12:432:19:669:-39.2578,0,-29.7206	0/0:30:30,0:30:1076:0:0:0,-9.0309,-97.0283	0/0:62:61,0:61:2180:0:0:0,-18.3628,-195.919	0/1:114:35,79:35:1260:79:2836:-178.883,0,-78.5572	0/0:41:41,0:41:1461:0:0:0,-12.3422,-131.195	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.618	0/1:65:28,37:28:1008:37:1324:-77.9672,0,-71.3752	0/0:48:48,0:48:1724:0:0:0,-14.4494,-154.881	0/1:122:58,64:58:2084:64:2288:-148.027,0,-151.006	0/0:191:191,0:191:6860:0:0:0,-57.4967,-616.516	0/0:29:29,0:29:1032:0:0:0,-8.72987,-92.9329	0/1:177:84,93:84:3020:93:3340:-217.506,0,-218.189	0/1:32:14,18:14:504:18:648:-39.7437,0,-35.5701	0/1:49:19,30:19:676:30:1076:-71.3735,0,-46.3205	0/1:6:3,3:3:108:3:108:-6.60487,0,-8.26899	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.4605	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5474	0/1:2:1,1:1:36:1:36:-2.3007,0,-2.99521	0/1:19:10,9:10:356:9:320:-17.857,0,-26.5118	0/1:175:77,98:77:2753:98:3520:-232.21,0,-195.169	0/0:34:34,0:34:1220:0:0:0,-10.235,-109.901	0/0:51:51,0:51:1828:0:0:0,-15.3525,-163.674	0/1:3:1,2:1:36:2:72:-4.90053,0,-2.69518	0/0:68:68,0:68:2444:0:0:0,-20.47,-220.09	0/0:36:36,0:36:1280:0:0:0,-10.8371,-115.45	0/0:121:121,0:121:4344:0:0:0,-36.4246,-389.604	0/0:57:57,0:57:2052:0:0:0,-17.1587,-184.427	0/0:48:48,0:48:1716:0:0:0,-14.4494,-154.238	0/1:85:43,42:43:1536:42:1512:-95.4727,0,-111.755	0/0:66:66,0:66:2372:0:0:0,-19.868,-213.379	0/1:92:36,56:36:1296:56:2008:-126.289,0,-89.2199	0/0:67:66,1:66:2349:1:36:0,-16.9814,-205.874	0/1:50:21,29:21:756:29:1036:-66.1002,0,-53.3157	0/0:35:35,0:35:1260:0:0:0,-10.536,-113.705	0/1:8:3,5:3:108:5:180:-12.1324,0,-7.66693	0/1:76:29,47:29:1040:47:1688:-99.6177,0,-70.7733	0/1:20:7,13:7:240:13:464:-32.5075,0,-15.9134	1/1:4:0,4:0:0:4:144:-10.7402,-1.20412,0	0/1:105:40,65:40:1428:65:2316:-140.363,0,-96.8705	0/0:39:38,0:38:1364:0:0:0,-11.4391,-122.676	0/1:13:7,6:7:252:6:216:-14.027,0,-19.0977	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7434	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5077	0/1:78:37,41:37:1332:41:1449:-90.5611,0,-96.6168	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.072	0/0:38:36,2:36:1284:2:72:0,-5.38265,-109.804	0/0:24:24,0:24:864:0:0:0,-7.22472,-78.0657	0/1:66:25,41:25:892:41:1472:-95.3087,0,-60.7294	0/1:80:36,44:36:1296:44:1580:-100.713,0,-92.8615	0/0:84:84,0:84:3008:0:0:0,-25.2865,-270.38	0/1:57:30,27:30:1072:27:968:-52.0197,0,-79.5984	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.141	0/1:37:15,22:15:532:22:792:-53.2526,0,-37.075	0/1:24:9,15:9:324:15:536:-35.1217,0,-22.2238	0/0:61:61,0:61:2184:0:0:0,-18.3628,-196.127	0/0:65:65,0:65:2340:0:0:0,-19.5669,-209.695	0/1:75:27,48:27:968:48:1716:-107.679,0,-64.8373	0/0:121:120,1:120:4308:1:36:0,-33.237,-384.211	0/0:68:68,0:68:2440:0:0:0,-20.47,-219.721	0/1:66:33,33:33:1184:33:1155:-64.9526,0,-86.2749	0/1:9:2,7:2:72:7:248:-15.7632,0,-4.12554	0/0:74:74,0:74:2652:0:0:0,-22.2762,-236.87	0/1:90:37,53:37:1332:53:1900:-110.96,0,-91.4106	0/0:110:110,0:110:3952:0:0:0,-33.1133,-355.513	0/0:47:47,0:47:1676:0:0:0,-14.1484,-151.014	0/1:74:35,39:35:1256:39:1392:-88.3665,0,-91.0104	0/0:50:50,0:50:1796:0:0:0,-15.0515,-161.779	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.107	0/1:16:9,7:9:324:7:252:-13.7612,0,-24.0484	0/0:46:46,0:46:1648:0:0:0,-13.8474,-148.029	0/1:67:31,36:31:1099:36:1292:-73.7262,0,-78.9553	0/1:46:21,25:21:756:25:891:-52.2272,0,-54.5118	0/1:99:46,53:46:1648:53:1908:-109.994,0,-118.356	0/1:91:30,61:30:1076:61:2177:-143.453,0,-69.7536	0/0:52:51,0:51:1809:0:0:0,-15.3525,-162.551	0/0:120:119,1:119:4264:1:36:0,-32.5568,-380.196
chr12	25476610	.	T	A	82826.6	PASS	AB=0.497418;ABP=3.1561;AC=144;AF=0.765957;AN=188;AO=3933;CIGAR=1X;DP=5202;DPB=5202;DPRA=0;EPP=8543.41;EPPR=2758.61;GTI=19;LEN=1;MEANALT=1;MQM=50.614;MQMR=23.8448;NS=94;NUMALT=1;ODDS=0.107162;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=140253;QR=45087;RO=1269;RPL=0;RPP=8543.41;RPPR=2758.61;RPR=3933;RUN=1;SAF=0;SAP=8543.41;SAR=3933;SRF=0;SRP=2758.61;SRR=1269;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:468:-42.4596,-3.91339,0	1/1:40:0,40:0:0:40:1397:-126.022,-12.0412,0	0/1:134:69,65:69:2447:65:2316:-168.347,0,-172.584	0/1:164:77,87:77:2725:87:3084:-223.102,0,-41.849	0/1:14:8,6:8:288:6:216:-15.3024,0,-6.71129	0/1:20:9,11:9:320:11:396:-29.9621,0,-22.0162	1/1:80:0,80:0:0:80:2836:-252.195,-24.0824,0	0/1:52:21,31:21:744:31:1085:-82.3043,0,-49.4614	0/1:46:26,20:26:916:20:711:-50.4691,0,-65.688	1/1:76:0,76:0:0:76:2724:-241.551,-22.8783,0	0/1:13:7,6:7:252:6:212:-15.2645,0,-6.2208	0/1:75:37,38:37:1303:38:1360:-100.099,0,-90.9631	0/1:64:33,31:33:1169:31:1084:-78.6002,0,-81.7346	0/1:18:9,9:9:312:9:320:-23.3424,0,-7.83292	1/1:51:0,51:0:0:51:1823:-161.208,-15.3525,0	0/1:42:22,20:22:780:20:716:-51.2953,0,-21.3001	1/1:14:0,14:0:0:14:504:-45.6981,-4.21442,0	0/1:25:12,13:12:428:13:464:-34.5718,0,-30.0945	1/1:12:0,12:0:0:12:428:-38.8311,-3.61236,0	1/1:69:0,69:0:0:69:2463:-219.053,-20.7711,0	0/1:120:54,66:54:1916:66:2361:-173.566,0,-45.0883	1/1:58:0,58:0:0:58:2069:-185.794,-17.4597,0	1/1:44:0,44:0:0:44:1575:-139.236,-13.2453,0	0/1:59:24,35:24:851:35:1248:-92.8421,0,-20.3513	1/1:25:0,25:0:0:25:876:-78.1125,-7.52575,0	0/1:131:66,65:66:2355:65:2331:-170.524,0,-92.0075	1/1:143:0,143:0:0:143:5096:-451.068,-43.0473,0	1/1:34:0,34:0:0:34:1215:-107.584,-10.235,0	0/1:165:84,81:84:3012:81:2887:-210.352,0,-117.058	0/1:74:35,39:35:1231:39:1391:-101.033,0,-28.9828	0/1:63:41,22:41:1472:22:788:-51.3161,0,-32.3307	0/1:10:4,6:4:144:6:216:-16.5065,0,-4.33837	1/1:16:0,16:0:0:16:576:-51.4986,-4.81648,0	1/1:5:0,5:0:0:5:172:-15.818,-1.50515,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	0/1:11:5,6:5:180:6:216:-16.4792,0,-12.5793	0/1:154:83,71:83:2924:71:2534:-181.952,0,-117.331	1/1:81:0,81:0:0:81:2889:-256.331,-24.3834,0	1/1:27:0,27:0:0:27:963:-86.9859,-8.12781,0	1/1:1:0,1:0:0:1:36:-3.54852,-0.30103,0	1/1:86:0,86:0:0:86:3080:-272.854,-25.8886,0	1/1:29:0,29:0:0:29:1031:-91.3212,-8.72987,0	1/1:51:0,51:0:0:51:1824:-159.901,-15.3525,0	1/1:29:0,29:0:0:29:1044:-93.061,-8.72987,0	1/1:34:0,34:0:0:34:1212:-107.378,-10.235,0	0/1:51:31,20:31:1112:20:716:-49.3702,0,-44.8643	1/1:24:1,23:1:36:23:807:-69.4947,-3.77023,0	0/1:83:41,42:41:1464:42:1504:-108.944,0,-19.2582	1/1:78:0,78:0:0:78:2787:-247.735,-23.4803,0	0/1:45:21,24:21:752:24:856:-62.8229,0,-17.7384	1/1:133:0,133:0:0:133:4763:-428.827,-40.037,0	1/1:3:0,3:0:0:3:104:-9.59075,-0.90309,0	0/1:37:19,18:19:676:18:644:-47.1525,0,-45.357	0/1:33:18,15:18:640:15:536:-38.6408,0,-25.6074	0/1:5:2,3:2:72:3:104:-8.19766,0,-5.05838	0/1:73:43,30:43:1504:30:1072:-73.63,0,-41.523	1/1:22:0,22:0:0:22:777:-69.3037,-6.62266,0	1/1:5:0,5:0:0:5:171:-15.7255,-1.50515,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:47:0,47:0:0:47:1688:-149.709,-14.1484,0	0/1:89:39,50:39:1388:50:1783:-131.961,0,-15.9188	1/1:1:0,1:0:0:1:36:-3.54852,-0.30103,0	1/1:194:0,194:0:0:194:6919:-622.686,-58.3998,0	1/1:68:0,68:0:0:68:2430:-215.629,-20.47,0	1/1:35:0,35:0:0:35:1252:-111.555,-10.5361,0	0/1:42:17,25:17:600:25:896:-67.2189,0,-11.5293	0/1:78:35,43:35:1260:43:1529:-112.65,0,-15.6979	1/1:88:0,88:0:0:88:3149:-279.31,-26.4906,0	0/1:18:7,11:7:244:11:396:-30.1345,0,-6.03397	1/1:55:0,55:0:0:55:1952:-175.939,-16.5567,0	0/1:54:29,25:29:1032:25:900:-65.0654,0,-42.0881	0/1:17:5,12:5:180:12:419:-31.8806,0,-0.395053	1/1:109:0,109:0:0:109:3871:-348.585,-32.8123,0	1/1:58:0,58:0:0:58:2072:-186.751,-17.4597,0	0/1:70:25,45:25:892:45:1593:-119.692,0,-12.564	1/1:130:0,130:0:0:130:4663:-413.136,-39.1339,0	1/1:12:0,12:0:0:12:432:-39.2074,-3.61236,0	0/1:68:37,31:37:1316:31:1103:-79.1098,0,-94.1606	0/1:13:5,8:5:176:8:288:-22.354,0,-11.6844	1/1:71:0,71:0:0:71:2532:-221.813,-21.3731,0	0/1:47:21,26:21:752:26:924:-69.3292,0,-51.515	1/1:107:0,107:0:0:107:3848:-341.936,-32.2102,0	1/1:50:0,50:0:0:50:1778:-158.17,-15.0515,0	0/1:44:23,21:23:808:21:743:-53.0681,0,-18.1526	1/1:33:0,33:0:0:33:1175:-104.774,-9.93399,0	1/1:90:3,87:3:104:87:3086:-269.257,-23.7395,0	0/1:21:13,8:13:464:8:288:-19.9458,0,-34.1524	1/1:45:0,45:0:0:45:1616:-145.73,-13.5464,0	0/1:55:28,27:28:1000:27:944:-68.7147,0,-68.901	0/1:8:4,4:4:144:4:144:-10.7213,0,-3.12945	0/1:66:44,22:44:1562:22:788:-49.9639,0,-46.7633	0/1:46:32,14:32:1140:14:504:-31.2188,0,-20.7793	1/1:118:0,118:0:0:118:4183:-371.389,-35.5215,0	1/1:82:0,82:0:0:82:2927:-260.261,-24.6845,0
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chr12	25484509	.	G	A	23117.8	PASS	AB=0.501465;ABP=3.06121;AC=48;AF=0.255319;AN=188;AO=1376;CIGAR=1X;DP=5894;DPB=5894;DPRA=0.907903;EPP=2982.28;EPPR=9761.66;GTI=3;LEN=1;MEANALT=1.03922;MQM=59.9673;MQMR=59.9858;NS=94;NUMALT=1;ODDS=2.08817;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=49287;QR=160133;RO=4514;RPL=1;RPP=2982.28;RPPR=9761.66;RPR=1375;RUN=1;SAF=0;SAP=2990.96;SAR=1376;SRF=0;SRP=9805.04;SRR=4514;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:42:42,0:42:1500:0:0:0,-12.6433,-135.295	0/0:68:66,1:66:2339:1:36:0,-16.8856,-207.215	0/1:103:45,58:45:1612:58:2076:-156.104,0,-114.364	0/1:108:66,41:66:2341:41:1472:-100.206,0,-178.378	0/1:42:25,17:25:900:17:604:-42.0473,0,-68.6778	0/1:39:14,25:14:504:25:896:-69.2202,0,-33.9579	0/0:94:94,0:94:3350:0:0:0,-28.2968,-301.717	0/1:81:44,37:44:1558:37:1332:-95.7706,0,-116.127	0/1:58:19,39:19:667:39:1391:-108.029,0,-42.8949	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/1:53:32,21:32:1135:21:756:-52.4126,0,-86.5035	0/1:54:27,27:27:919:27:972:-71.5423,0,-66.7616	0/1:49:24,25:24:851:25:900:-66.5705,0,-62.159	0/1:68:40,28:40:1406:28:1004:-70.2058,0,-106.366	0/0:45:45,0:45:1607:0:0:0,-13.5463,-144.919	0/1:42:19,23:19:675:23:824:-61.8401,0,-48.4337	0/0:89:89,0:89:3130:0:0:0,-26.7917,-281.924	0/1:40:19,21:19:680:21:756:-56.326,0,-49.488	0/0:31:31,0:31:1075:0:0:0,-9.33193,-97.0546	0/0:114:114,0:114:4066:0:0:0,-34.3174,-366.124	0/1:78:35,43:35:1247:43:1540:-115.413,0,-89.0537	0/0:158:157,0:157:5573:0:0:0,-47.2617,-501.335	0/0:22:22,0:22:780:0:0:0,-6.62266,-70.523	0/1:99:45,54:45:1603:54:1944:-145.434,0,-114.757	0/0:49:48,0:48:1716:0:0:0,-14.4494,-154.366	0/1:179:79,100:79:2811:100:3585:-268.966,0,-199.346	0/0:115:115,0:115:4098:0:0:0,-34.6184,-369.006	0/0:20:20,0:20:686:0:0:0,-6.0206,-62.0557	0/1:129:59,70:59:2103:70:2503:-186.664,0,-150.706	0/1:73:31,42:31:1103:42:1503:-113.589,0,-77.6046	0/1:41:18,23:18:635:23:820:-61.7803,0,-45.1347	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:13:13,0:13:468:0:0:0,-3.91339,-42.4596	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:6:5,1:5:161:1:36:-1.79209,0,-13.0004	0/1:132:67,65:67:2377:65:2327:-169.953,0,-174.451	0/0:154:154,0:154:5492:0:0:0,-46.3586,-494.41	0/0:49:49,0:49:1732:0:0:0,-14.7505,-156.162	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:84:84,0:84:3007:0:0:0,-25.2865,-270.861	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/0:92:92,0:92:3265:0:0:0,-27.6948,-294.071	0/0:44:44,0:44:1544:0:0:0,-13.2453,-139.249	0/0:51:51,0:51:1776:0:0:0,-15.3525,-160.117	0/1:70:40,30:40:1436:30:1072:-75.7204,0,-108.466	0/0:66:65,1:65:2332:1:27:0,-17.1682,-207.44	0/1:104:55,49:55:1949:49:1746:-126.116,0,-144.377	0/0:81:81,0:81:2874:0:0:0,-24.3834,-258.897	0/1:58:33,25:33:1175:25:892:-63.1399,0,-88.5972	0/0:122:122,0:122:4343:0:0:0,-36.7257,-391.044	0/1:8:2,6:2:72:6:216:-17.3823,0,-4.42848	0/1:73:37,36:37:1328:36:1292:-94.6086,0,-97.3562	0/1:33:18,15:18:640:15:540:-39.0025,0,-47.9953	0/1:16:10,6:10:356:6:216:-14.974,0,-27.5648	0/1:44:18,26:18:620:26:936:-71.3141,0,-42.8748	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:10:9,1:9:324:1:36:-0.587975,0,-26.4956	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:40:40,0:40:1410:0:0:0,-12.0412,-127.196	0/1:93:60,33:60:2132:33:1188:-79.2328,0,-164.15	0/0:10:10,0:10:360:0:0:0,-3.0103,-32.7443	0/0:107:107,0:107:3811:0:0:0,-32.2102,-343.189	0/0:135:135,0:135:4793:0:0:0,-40.639,-431.529	0/0:60:60,0:60:2101:0:0:0,-18.0618,-189.356	0/1:37:18,19:18:644:19:684:-50.7522,0,-47.1525	0/1:77:46,31:46:1639:31:1108:-76.8517,0,-124.619	0/0:91:91,0:91:3226:0:0:0,-27.3937,-290.563	0/1:24:13,11:13:468:11:396:-28.758,0,-35.2349	0/0:47:47,0:47:1671:0:0:0,-14.1484,-150.677	0/1:64:35,29:35:1240:29:1040:-74.6484,0,-92.6385	0/1:16:9,7:9:320:7:252:-18.2125,0,-24.3259	0/0:116:115,1:115:4078:1:36:0,-31.3212,-363.61	0/0:35:35,0:35:1252:0:0:0,-10.536,-112.985	0/1:115:41,74:41:1451:74:2642:-203.407,0,-96.2667	0/0:99:99,0:99:3515:0:0:0,-29.802,-316.559	0/0:84:84,0:84:2964:0:0:0,-25.2865,-266.991	0/1:43:21,22:21:728:22:792:-58.6614,0,-52.8934	0/1:11:5,6:5:171:6:216:-16.4792,0,-12.4141	0/0:41:41,0:41:1450:0:0:0,-12.3422,-130.794	0/1:94:55,39:55:1976:39:1404:-98.3625,0,-149.818	0/0:171:171,0:171:6039:0:0:0,-51.4761,-543.618	0/0:84:84,0:84:2956:0:0:0,-25.2865,-266.271	0/1:38:22,16:22:775:16:567:-39.9216,0,-58.632	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/0:74:72,2:72:2544:2:68:0,-15.8185,-222.752	0/1:23:9,14:9:311:14:504:-38.7744,0,-21.4	0/0:67:67,0:67:2361:0:0:0,-20.169,-212.377	0/1:46:25,21:25:896:21:747:-53.7069,0,-67.113	0/1:45:16,29:16:563:29:1029:-79.3748,0,-37.4528	0/1:70:32,38:32:1108:38:1356:-101.255,0,-78.9519	0/1:40:16,24:16:576:24:864:-66.0414,0,-40.1338	0/0:57:57,0:57:2018:0:0:0,-17.1587,-181.891	0/0:76:76,0:76:2675:0:0:0,-22.8783,-240.992
chr12	25498818	.	C	T	193195	PASS	AB=0.499322;ABP=3.03387;AC=140;AF=0.744681;AN=188;AO=8958;CIGAR=1X;DP=11920;DPB=11920;DPRA=0;EPP=18732.3;EPPR=6196.02;GTI=0;LEN=1;MEANALT=1.03191;MQM=59.9882;MQMR=59.977;NS=94;NUMALT=1;ODDS=0.642392;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=320503;QR=105338;RO=2959;RPL=84;RPP=18732.3;RPPR=6196.02;RPR=8874;RUN=1;SAF=8958;SAP=19455.1;SAR=0;SRF=2959;SRP=6428.4;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:69:0,69:0:0:69:2456:-221.292,-20.7711,0	1/1:132:0,132:0:0:132:4717:-424.688,-39.736,0	0/1:238:111,127:111:3959:127:4549:-337.93,0,-284.854	0/1:391:190,201:190:6776:201:7198:-530.163,0,-492.214	0/1:72:42,30:42:1489:30:1065:-74.4856,0,-112.628	0/1:65:28,37:28:985:37:1332:-100.615,0,-69.3946	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	0/1:250:114,136:114:4040:136:4873:-363.463,0,-288.535	0/1:111:60,51:60:2122:51:1831:-131.657,0,-157.833	1/1:106:0,106:0:0:106:3786:-340.937,-31.9092,0	0/1:29:11,18:11:396:18:648:-49.922,0,-27.2529	0/1:114:66,48:66:2339:48:1713:-120.136,0,-176.452	0/1:67:30,37:30:1055:37:1332:-100.013,0,-75.091	0/1:41:23,18:23:828:18:648:-46.3097,0,-62.5019	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	0/1:44:26,18:26:936:18:643:-44.9549,0,-71.3141	1/1:29:0,29:0:0:29:1029:-92.922,-8.72987,0	0/1:30:14,16:14:500:16:576:-43.1441,0,-36.3053	1/1:25:1,24:1:36:24:860:-74.1236,-3.92748,0	1/1:394:0,394:0:0:394:14120:-1270.56,-118.606,0	0/1:280:134,146:134:4765:146:5205:-384.301,0,-344.583	1/1:121:0,121:0:0:121:4348:-391.492,-36.4246,0	1/1:192:0,192:0:0:192:6896:-620.705,-57.7978,0	0/1:86:35,51:35:1256:51:1836:-139.632,0,-87.4567	1/1:96:0,96:0:0:96:3452:-310.891,-28.8989,0	0/1:474:255,219:255:9052:219:7868:-565.455,0,-671.975	1/1:324:0,323:0:0:323:11542:-1038.38,-97.2327,0	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:376:207,169:207:7375:169:6040:-430.514,0,-550.186	0/1:116:51,65:51:1815:65:2332:-175.22,0,-128.711	0/1:178:73,105:73:2616:105:3749:-284.026,0,-182.104	0/1:20:4,16:4:144:16:576:-46.1544,0,-7.29302	1/1:21:0,21:0:0:21:752:-68.0063,-6.32163,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:23:18,5:18:640:5:180:-9.62837,0,-51.0056	0/1:22:8,14:8:288:14:504:-39.0754,0,-19.6447	0/1:189:103,86:103:3675:86:3092:-221.612,0,-274.059	1/1:171:0,171:0:0:171:6114:-550.354,-51.4761,0	1/1:34:0,34:0:0:34:1209:-109.114,-10.235,0	0/1:13:6,7:6:208:7:252:-19.1156,0,-15.1457	1/1:111:0,111:0:0:111:3954:-356.049,-33.4143,0	1/1:18:0,18:0:0:18:648:-58.6519,-5.41854,0	1/1:277:0,276:0:0:276:9876:-888.421,-83.0843,0	1/1:58:0,58:0:0:58:2075:-187.02,-17.4597,0	1/1:50:0,50:0:0:50:1787:-161.111,-15.0515,0	0/1:116:55,61:55:1976:61:2188:-162.266,0,-143.195	1/1:216:0,216:0:0:216:7722:-695.011,-65.0225,0	0/1:282:140,142:140:5016:142:5029:-367.865,0,-366.696	1/1:131:0,131:0:0:131:4688:-422.079,-39.4349,0	0/1:163:86,77:86:3059:77:2733:-197.143,0,-226.472	1/1:146:0,146:0:0:146:5195:-467.687,-43.9504,0	0/1:14:7,7:7:239:7:252:-18.8145,0,-17.6283	0/1:158:89,69:89:3188:69:2472:-175.171,0,-239.581	0/1:162:74,88:74:2619:88:3152:-235.138,0,-187.192	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:221:122,99:122:4347:99:3556:-253.72,0,-324.879	1/1:49:0,49:0:0:49:1756:-158.324,-14.7505,0	0/1:24:8,16:8:284:16:568:-44.2265,0,-18.6786	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:77:0,77:0:0:77:2741:-246.931,-23.1793,0	0/1:86:45,41:45:1596:41:1472:-106.888,0,-118.042	1/1:17:0,17:0:0:17:612:-55.4134,-5.11751,0	1/1:335:0,334:0:0:334:11969:-1076.85,-100.544,0	1/1:310:1,309:1:36:309:11016:-987.715,-89.721,0	1/1:93:2,91:2:72:91:3253:-286.153,-21.1591,0	0/1:181:79,102:79:2811:102:3641:-273.407,0,-198.744	0/1:291:148,143:148:5251:143:5121:-373.431,0,-385.119	1/1:296:2,294:2:72:294:10524:-940.235,-82.2682,0	0/1:37:18,19:18:633:19:684:-50.7522,0,-46.157	1/1:95:0,95:0:0:95:3404:-306.574,-28.5979,0	0/1:44:18,26:18:644:26:936:-71.3137,0,-45.0453	0/1:20:9,11:9:315:11:396:-29.9621,0,-22.6666	1/1:108:0,108:0:0:108:3858:-347.413,-32.5112,0	1/1:135:0,135:0:0:135:4833:-435.123,-40.6391,0	0/1:191:98,93:98:3500:93:3327:-242.151,0,-257.715	1/1:250:0,250:0:0:250:8927:-803.412,-75.2575,0	1/1:153:0,153:0:0:153:5492:-494.405,-46.0576,0	0/1:176:77,99:77:2748:99:3541:-265.916,0,-194.581	0/1:13:3,10:3:108:10:360:-28.8309,0,-6.16178	1/1:204:0,204:0:0:204:7294:-656.51,-61.4101,0	0/1:188:87,101:87:3070:101:3609:-268.421,0,-219.937	1/1:319:0,319:0:0:319:11424:-1028.03,-96.0286,0	1/1:55:0,55:0:0:55:1968:-177.395,-16.5567,0	0/1:66:37,29:37:1320:29:1029:-73.0532,0,-99.234	1/1:59:0,59:0:0:59:2120:-191.068,-17.7608,0	1/1:122:0,122:0:0:122:4334:-390.233,-36.7257,0	0/1:24:15,9:15:536:9:324:-22.2811,0,-41.3501	1/1:66:0,66:0:0:66:2376:-214.097,-19.868,0	0/1:59:34,25:34:1216:25:900:-63.5602,0,-91.9858	0/1:22:9,13:9:315:13:468:-35.837,0,-22.0646	0/1:45:29,16:29:1032:16:576:-38.6286,0,-79.6471	0/1:82:55,27:55:1968:27:972:-63.1134,0,-152.711	1/1:267:1,266:1:36:266:9470:-848.662,-76.7767,0	1/1:99:0,99:0:0:99:3546:-319.348,-29.802,0
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chr12	25518779	.	A	G	213272	PASS	AB=0.4997;ABP=3.0155;AC=140;AF=0.744681;AN=188;AO=10111;CIGAR=1X;DP=13473;DPB=13473;DPRA=0;EPP=21768.1;EPPR=7177.99;GTI=1;LEN=1;MEANALT=1.06383;MQM=59.9807;MQMR=59.9839;NS=94;NUMALT=1;ODDS=1.48843;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=360408;QR=120281;RO=3356;RPL=10091;RPP=21785.4;RPPR=7177.99;RPR=20;RUN=1;SAF=2;SAP=21941.4;SAR=10109;SRF=0;SRP=7290.47;SRR=3356;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:20:0,20:0:0:20:712:-64.4067,-6.0206,0	1/1:267:0,267:0:0:267:9511:-855.951,-80.375,0	0/1:148:81,67:81:2908:67:2387:-170.535,0,-217.403	0/1:259:125,134:125:4476:134:4756:-350.214,0,-325.043	0/1:107:56,50:56:2004:50:1778:-128.033,0,-148.365	0/1:74:31,43:31:1116:43:1539:-116.526,0,-78.4755	1/1:116:0,116:0:0:116:4155:-374.132,-34.9195,0	0/1:207:113,94:113:4056:94:3316:-236.344,0,-302.913	0/1:82:50,32:50:1779:32:1126:-76.9245,0,-135.708	1/1:86:0,86:0:0:86:3063:-275.899,-25.8886,0	0/1:90:40,50:40:1431:50:1792:-134.47,0,-101.994	0/1:118:45,73:45:1616:73:2602:-198.906,0,-110.208	0/1:105:44,61:44:1571:61:2177:-164.578,0,-110.073	0/1:167:88,79:88:3151:79:2814:-203.227,0,-233.542	1/1:107:0,107:0:0:107:3829:-344.805,-32.2102,0	0/1:75:49,26:49:1760:26:923:-60.8095,0,-136.107	1/1:138:0,138:0:0:138:4934:-444.208,-41.5421,0	0/1:95:46,49:46:1639:49:1747:-128.916,0,-119.2	1/1:43:0,43:0:0:43:1523:-137.362,-12.9443,0	1/1:302:0,301:0:0:301:10733:-965.521,-90.61,0	0/1:178:93,85:93:3319:85:3013:-217.818,0,-245.345	1/1:161:1,160:1:36:160:5704:-509.878,-44.8676,0	1/1:51:0,51:0:0:51:1827:-164.71,-15.3525,0	0/1:127:63,64:63:2251:64:2296:-168.67,0,-164.622	1/1:87:0,87:0:0:87:3091:-278.416,-26.1896,0	0/1:515:259,256:259:9299:256:9148:-668.264,0,-681.841	1/1:213:0,213:0:0:213:7550:-679.548,-64.1194,0	1/1:55:0,55:0:0:55:1971:-177.664,-16.5567,0	0/1:264:157,107:157:5644:107:3830:-265.423,0,-428.597	0/1:262:132,129:132:4727:129:4607:-335.861,0,-346.659	0/1:121:74,47:74:2652:47:1692:-116.142,0,-202.501	0/1:29:22,7:22:792:7:252:-14.2991,0,-62.8758	1/1:18:0,18:0:0:18:636:-57.3388,-5.41854,0	1/1:16:0,16:0:0:16:566:-51.2688,-4.81648,0	0/1:18:12,6:12:432:6:216:-14.372,0,-33.8027	0/1:11:7,4:7:248:4:140:-9.63325,0,-19.3529	0/1:277:119,158:119:4271:158:5629:-423.347,0,-301.181	1/1:379:0,379:0:0:379:13512:-1215.88,-114.09,0	1/1:96:0,96:0:0:96:3431:-308.995,-28.8989,0	0/1:3:2,1:2:68:1:36:-2.69518,0,-5.55462	1/1:217:0,217:0:0:217:7740:-696.635,-65.3235,0	1/1:35:0,35:0:0:35:1252:-112.985,-10.5361,0	1/1:176:0,176:0:0:176:6265:-563.946,-52.9813,0	1/1:105:0,105:0:0:105:3744:-337.16,-31.6082,0	1/1:107:0,107:0:0:107:3827:-344.626,-32.2102,0	0/1:96:51,45:51:1815:45:1593:-114.76,0,-134.732	1/1:167:0,167:0:0:167:5951:-535.692,-50.272,0	0/1:306:162,144:162:5812:144:5136:-370.266,0,-431.077	1/1:159:0,159:0:0:159:5662:-509.701,-47.8638,0	0/1:247:108,139:108:3872:139:4952:-371.477,0,-274.32	1/1:193:0,193:0:0:193:6899:-620.978,-58.0988,0	0/1:23:14,9:14:504:9:324:-22.5822,0,-38.7744	0/1:209:111,98:111:3966:98:3466:-249.238,0,-294.215	0/1:150:83,67:83:2976:67:2391:-170.292,0,-222.918	0/1:21:15,6:15:540:6:212:-13.1032,0,-42.6149	0/1:206:94,112:94:3359:112:3987:-297.01,0,-240.514	1/1:25:0,25:0:0:25:892:-80.5997,-7.52575,0	0/1:28:4,23:4:144:23:828:-66.3565,0,-4.82598	1/1:32:0,32:0:0:32:1131:-102.098,-9.63296,0	1/1:113:0,113:0:0:113:4050:-364.687,-34.0164,0	0/1:204:99,105:99:3560:105:3724:-273.951,0,-259.197	1/1:13:0,13:0:0:13:454:-41.1923,-3.91339,0	1/1:348:0,348:0:0:348:12412:-1116.92,-104.758,0	1/1:444:6,438:6:216:438:15619:-1385.62,-113.867,0	1/1:146:6,140:6:216:140:4983:-428.83,-24.1599,0	0/1:140:61,79:61:2171:79:2785:-208.747,0,-153.512	0/1:246:109,136:109:3920:136:4830:-360.745,0,-278.879	1/1:185:2,183:2:72:183:6547:-582.476,-48.8538,0	0/1:53:27,26:27:972:26:920:-67.1625,0,-71.8433	1/1:115:0,115:0:0:115:4087:-368.018,-34.6185,0	0/1:190:96,94:96:3448:94:3359:-245.331,0,-253.336	0/1:37:11,26:11:396:26:923:-72.2487,0,-24.8446	1/1:148:0,148:0:0:148:5245:-472.188,-44.5524,0	1/1:88:0,88:0:0:88:3142:-283.004,-26.4906,0	0/1:188:97,91:97:3467:91:3238:-235.048,0,-255.645	1/1:247:0,247:0:0:247:8835:-795.137,-74.3544,0	1/1:210:0,210:0:0:210:7513:-676.175,-63.2163,0	0/1:194:90,104:90:3227:104:3719:-276.511,0,-232.251	0/1:21:10,11:10:360:11:396:-29.6611,0,-26.4227	1/1:167:2,165:2:72:165:5884:-522.837,-43.4353,0	0/1:168:85,82:85:3052:82:2889:-209.613,0,-224.277	1/1:250:0,250:0:0:250:8937:-804.313,-75.2575,0	1/1:147:0,147:0:0:147:5270:-474.434,-44.2514,0	0/1:120:62,58:62:2208:58:2058:-149.367,0,-162.862	1/1:153:0,153:0:0:153:5467:-492.158,-46.0576,0	1/1:248:4,244:4:135:244:8733:-773.475,-62.1729,0	0/1:50:23,27:23:828:27:972:-72.7464,0,-59.7926	1/1:102:0,102:0:0:102:3640:-327.806,-30.7051,0	0/1:112:50,62:50:1800:62:2186:-163.29,0,-128.567	0/1:85:37,48:37:1332:48:1714:-128.958,0,-94.5948	0/1:161:71,90:71:2547:90:3170:-237.059,0,-181.014	0/1:89:57,32:57:2048:32:1125:-74.7644,0,-156.261	1/1:172:0,172:0:0:172:6132:-551.982,-51.7772,0	1/1:130:0,130:0:0:130:4634:-417.222,-39.1339,0
chr12	25560504	.	A	G	149966	PASS	AB=0.448669;ABP=141.448;AC=139;AF=0.739362;AN=188;AO=8287;CIGAR=1X;DP=11644;DPB=11644;DPRA=0;EPP=17998;EPPR=7268.76;GTI=1;LEN=1;MEANALT=1.07447;MQM=38.1868;MQMR=50.2618;NS=94;NUMALT=1;ODDS=0.333875;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=287216;QR=119654;RO=3350;RPL=3;RPP=17972;RPPR=2523.72;RPR=8284;RUN=1;SAF=3;SAP=17972;SAR=8284;SRF=2662;SRP=2528.84;SRR=688;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:44:0,44:0:0:44:1551:-126.226,-13.2453,0	1/1:227:0,227:0:0:227:7849:-650.682,-68.3338,0	0/1:219:114,104:114:4084:104:3661:-233.509,0,-301.642	0/1:279:157,122:157:5619:122:4264:-283.679,0,-419.24	0/1:40:13,27:13:468:27:936:-66.5889,0,-30.3959	0/1:68:25,43:25:896:43:1474:-100.864,0,-60.2165	1/1:181:0,181:0:0:181:6319:-545.264,-54.4864,0	0/1:189:77,112:77:2741:112:3863:-263.343,0,-188.302	0/1:111:49,62:49:1756:62:2173:-147.174,0,-124.902	1/1:96:0,96:0:0:96:3302:-285.17,-28.8989,0	0/1:57:25,32:25:900:32:1115:-78.9593,0,-64.1286	0/1:75:42,33:42:1504:33:1132:-70.6344,0,-113.077	0/1:64:33,31:33:1176:31:1041:-68.324,0,-86.8817	0/1:59:31,28:31:1116:28:925:-60.888,0,-82.9803	1/1:80:0,80:0:0:80:2746:-237.241,-24.0824,0	0/1:50:26,24:26:919:24:851:-57.5502,0,-67.8764	1/1:81:0,81:0:0:81:2812:-231.338,-24.3834,0	0/1:77:42,35:42:1496:35:1225:-77.3371,0,-110.901	1/1:61:0,61:0:0:61:2133:-177.316,-18.3628,0	1/1:289:2,287:2:72:287:9877:-845.833,-80.4005,0	0/1:236:130,106:130:4656:106:3641:-236.839,0,-346.969	1/1:71:1,69:1:36:69:2381:-206.795,-20.2982,0	1/1:108:0,108:0:0:108:3811:-325.34,-32.5112,0	0/1:147:55,92:55:1976:92:3152:-222.706,0,-133.252	1/1:105:1,104:1:36:104:3573:-297.31,-28.262,0	0/1:548:381,167:381:13583:167:5870:-347.47,0,-620.527	1/1:288:0,287:0:0:287:9953:-840.415,-86.3956,0	1/1:60:0,60:0:0:60:2082:-173.426,-18.0618,0	0/1:578:445,133:445:15883:133:4640:-232.527,0,-829.296	0/1:116:51,65:51:1832:65:2252:-154.298,0,-130.041	0/1:106:41,65:41:1472:65:2250:-161.461,0,-100.839	0/1:8:4,4:4:144:4:144:-9.8178,0,-10.9054	1/1:4:0,4:0:0:4:144:-12.5341,-1.20412,0	1/1:5:0,5:0:0:5:165:-14.0601,-1.50515,0	0/1:16:5,11:5:180:11:392:-26.0967,0,-11.7356	0/1:16:12,4:12:428:4:144:-7.38991,0,-34.0423	0/1:308:204,104:204:7279:104:3588:-222.636,0,-313.022	1/1:141:0,141:0:0:141:4898:-412.113,-42.4452,0	1/1:76:0,76:0:0:76:2595:-214.815,-22.8783,0	0/1:3:2,1:2:72:1:36:-2.48451,0,-5.93363	1/1:277:0,277:0:0:277:9620:-814.205,-83.3853,0	1/1:53:0,53:0:0:53:1860:-156.773,-15.9546,0	1/1:158:0,158:0:0:158:5477:-462.58,-47.5627,0	1/1:86:0,86:0:0:86:2938:-254.799,-25.8886,0	1/1:86:0,86:0:0:86:2956:-254.196,-25.8886,0	0/1:170:87,83:87:3092:83:2864:-198.507,0,-130.741	1/1:146:0,146:0:0:146:5072:-416.874,-43.9504,0	0/1:209:124,85:124:4402:85:2893:-186.696,0,-331.374	1/1:111:0,110:0:0:110:3839:-330.077,-33.1133,0	0/1:140:64,76:64:2264:76:2667:-187.377,0,-161.843	1/1:205:1,204:1:36:204:6994:-609.516,-58.1129,0	0/1:20:16,4:16:572:4:144:-5.37195,0,-45.7905	0/1:318:106,212:106:3797:212:7322:-508.129,0,-242.324	0/1:73:51,22:51:1823:22:758:-44.1747,0,-66.1704	0/1:7:3,4:3:108:4:140:-9.87303,0,-7.96796	0/1:220:127,93:127:4560:93:3213:-204.528,0,-344.003	1/1:66:2,64:2:72:64:2196:-183.111,-13.0313,0	0/1:7:5,2:5:180:2:57:-3.21212,0,-9.66222	1/1:28:0,28:0:0:28:989:-86.8098,-8.42884,0	1/1:65:1,64:1:36:64:2189:-182.109,-16.0184,0	0/1:98:50,48:50:1792:48:1654:-111.008,0,-132.02	0/1:5:2,3:2:72:3:108:-7.77854,0,-5.09205	1/1:224:2,221:2:64:221:7778:-669.719,-61.3837,0	1/1:252:1,251:1:32:251:8699:-746.407,-72.6602,0	1/1:99:1,98:1:36:98:3408:-282.822,-26.2037,0	0/1:101:62,39:62:2216:39:1329:-85.4495,0,-168.879	0/1:203:114,89:114:4074:89:3079:-204.08,0,-305.3	1/1:100:1,99:1:36:99:3466:-293.914,-26.5052,0	0/1:35:19,16:19:680:16:560:-37.4712,0,-50.9931	1/1:93:0,93:0:0:93:3216:-265.402,-27.9958,0	0/1:131:96,35:96:3448:35:1209:-65.9633,0,-191.071	0/1:33:23,10:23:828:10:341:-19.9747,0,-64.9097	1/1:96:0,96:0:0:96:3319:-273.673,-28.8989,0	1/1:99:0,99:0:0:99:3453:-285.604,-29.802,0	0/1:201:46,154:46:1609:154:5361:-392.665,0,-84.293	1/1:212:0,212:0:0:212:7451:-639.201,-63.8184,0	1/1:148:0,148:0:0:148:5158:-423.385,-44.5524,0	0/1:180:83,97:83:2980:97:3413:-225.207,0,-213.765	0/1:12:9,3:9:324:3:108:-5.62491,0,-25.8935	1/1:170:1,169:1:36:169:5870:-491.056,-47.5768,0	0/1:130:64,66:64:2283:66:2306:-151.505,0,-166.469	1/1:283:0,282:0:0:282:9832:-845.508,-84.8905,0	1/1:98:0,98:0:0:98:3361:-291.009,-29.5009,0	0/1:73:41,32:41:1464:32:1118:-73.487,0,-109.378	1/1:90:0,90:0:0:90:3072:-264.395,-27.0927,0	1/1:115:3,112:3:108:112:3796:-316.444,-24.5433,0	0/1:57:32,25:32:1126:25:876:-56.0731,0,-84.4406	1/1:66:0,66:0:0:66:2191:-183.432,-19.868,0	0/1:66:33,33:33:1184:33:1128:-74.0149,0,-86.802	0/1:42:29,13:29:1040:13:449:-25.7712,0,-81.2604	0/1:76:39,37:39:1388:37:1281:-86.4199,0,-102.282	0/1:72:44,28:44:1568:28:960:-61.1766,0,-117.373	1/1:142:0,142:0:0:142:4915:-422.041,-42.7463,0	1/1:110:0,110:0:0:110:3803:-328.306,-33.1133,0
chr12	25600373	.	ATTCA	TTTTG,ATTCG	107990	PASS	AB=0.514254,0.481303;ABP=7.77693,11.2114;AC=140,48;AF=0.744681,0.255319;AN=188;AO=3822,1312;CIGAR=1X2M2X,4M1X;DP=5160;DPB=5160;DPRA=11.086,1.18409;EPP=8302.38,2843.3;EPPR=0;GTI=2;LEN=5,1;MEANALT=1.7957,2.24528;MQM=53.6523,59.971;MQMR=0;NS=94;NUMALT=2;ODDS=0.225426;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=134947,46809;QR=0;RO=0;RPL=0,1;RPP=8302.38,2843.3;RPPR=0;RPR=3822,1311;RUN=1,1;SAF=3822,1312;SAP=8302.38,2851.98;SAR=0,0;SRF=0;SRP=0;SRR=0;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29,0:0:0:29,0:1012,0:-90.9702,-8.72987,0,-90.9702,-8.72987,-90.9702	1/1:60:0,60,0:0:0:60,0:2125,0:-190.015,-18.0618,0,-190.015,-18.0618,-190.015	1/2:123:0,63,60:0:0:63,60:2242,2134:-356.494,-174.265,-155.3,-182.584,0,-164.522	1/2:159:0,60,98:0:0:60,98:2100,3499:-455.287,-285.376,-267.315,-170.02,0,-140.519	1/2:25:0,11,14:0:0:11,14:385,495:-71.8231,-40.6693,-37.3579,-31.5043,0,-27.2899	1/2:31:0,18,13:0:0:18,13:624,464:-88.2333,-38.1841,-32.7656,-50.3999,0,-46.4865	1/1:52:0,52,0:0:0:52,0:1850,0:-166.591,-15.6536,0,-166.591,-15.6536,-166.591	1/2:88:0,56,32:0:0:56,32:1987,1152:-254.731,-94.349,-77.4913,-160.738,0,-151.105	1/2:42:0,31,11:0:0:31,11:1090,392:-119.61,-32.3087,-22.9768,-87.6552,0,-84.3439	1/1:75:0,75,0:0:0:75,0:2626,0:-235.158,-22.5773,0,-235.158,-22.5773,-235.158	1/2:30:0,16,14:0:0:16,14:571,492:-86.744,-40.3979,-35.5814,-46.6992,0,-42.4848	1/2:47:0,23,24:0:0:23,24:810,856:-135.864,-70.1364,-63.2127,-66.0811,0,-58.8564	1/2:26:0,8,18:0:0:8,18:287,644:-76.2183,-52.8721,-50.4638,-23.7039,0,-18.2853	1/2:77:0,42,34:0:0:42,34:1480,1205:-217.251,-98.1601,-85.5168,-119.083,0,-108.848	1/1:29:0,29,0:0:0:29,0:1038,0:-93.6482,-8.72987,0,-93.6482,-8.72987,-93.6482	1/2:33:0,15,18:0:0:15,18:530,635:-95.1593,-52.0584,-47.543,-43.4535,0,-38.035	1/1:49:0,49,0:0:0:49,0:1745,0:-155.201,-14.7505,0,-155.201,-14.7505,-155.201	1/2:42:0,21,21:0:0:21,21:737,740:-119.358,-60.6017,-54.2801,-59.105,0,-52.7833	1/1:21:0,21,0:0:0:21,0:749,0:-67.2314,-6.32163,0,-67.2314,-6.32163,-67.2314	1/1:67:0,67,0:0:0:67,0:2356,0:-212.126,-20.169,0,-212.126,-20.169,-212.126	1/2:41:0,22,18:0:0:22,18:783,644:-116.336,-52.6166,-45.9939,-63.8184,0,-58.3999	1/1:77:0,76,0:0:0:76,0:2683,0:-240.687,-22.8783,0,-240.687,-22.8783,-240.687	1/1:34:0,34,0:0:0:34,0:1219,0:-109.704,-10.235,0,-109.704,-10.235,-109.704	1/2:55:0,18,36:0:0:18,36:625,1288:-155.624,-105.027,-99.6082,-50.5881,0,-39.751	1/1:39:0,39,0:0:0:39,0:1352,0:-121.154,-11.7402,0,-121.154,-11.7402,-121.154	1/2:179:0,106,73:0:0:106,73:3769,2595:-518.523,-211.823,-179.914,-307.055,0,-285.08	1/1:118:0,116,0:0:0:116,0:4066,0:-364.831,-34.9195,0,-364.831,-34.9195,-364.831	1/1:9:0,9,0:0:0:9,0:322,0:-29.2843,-2.70927,0,-29.2843,-2.70927,-29.2843	1/2:141:0,69,72:0:0:69,72:2441,2569:-408.158,-209.785,-189.014,-198.728,0,-177.054	1/2:89:0,49,40:0:0:49,40:1719,1432:-255.338,-117.136,-102.386,-138.554,0,-126.513	1/2:110:0,58,52:0:0:58,52:2040,1868:-318.485,-152.746,-135.286,-166.095,0,-150.441	1/2:5:0,3,2:0:0:3,2:99,72:-14.2103,-6.23466,-5.33157,-8.32336,0,-7.7213	1/1:14:0,14,0:0:0:14,0:482,0:-43.6278,-4.21442,0,-43.6278,-4.21442,-43.6278	1/1:3:0,3,0:0:0:3,0:108,0:-10.0441,-0.90309,0,-10.0441,-0.90309,-10.0441	1/2:3:0,1,2:0:0:1,2:36,72:-9.16364,-6.23466,-5.93363,-3.2882,0,-2.68614	2/2:5:0,0,5:0:0:0,5:0,180:-16.5521,-16.5521,-16.5521,-1.50515,-1.50515,0	1/2:92:0,55,36:0:0:55,36:1963,1292:-265.333,-105.523,-88.9665,-159.943,0,-149.106	1/1:141:0,141,0:0:0:141,0:4934,0:-443.108,-42.4452,0,-443.108,-42.4452,-443.108	1/1:44:0,44,0:0:0:44,0:1548,0:-138.432,-13.2453,0,-138.432,-13.2453,-138.432	1/1:2:0,2,0:0:0:2,0:72,0:-6.82703,-0.60206,0,-6.82703,-0.60206,-6.82703	1/1:56:0,56,0:0:0:56,0:1982,0:-178.05,-16.8577,0,-178.05,-16.8577,-178.05	1/1:27:0,27,0:0:0:27,0:963,0:-86.8685,-8.12781,0,-86.8685,-8.12781,-86.8685	1/1:39:0,39,0:0:0:39,0:1376,0:-123.869,-11.7402,0,-123.869,-11.7402,-123.869	1/1:27:0,27,0:0:0:27,0:957,0:-86.1161,-8.12781,0,-86.1161,-8.12781,-86.1161	1/1:32:0,32,0:0:0:32,0:1142,0:-102.582,-9.63296,0,-102.582,-9.63296,-102.582	1/2:29:0,20,9:0:0:20,9:712,324:-84.6371,-26.7966,-20.776,-58.1988,0,-55.4895	1/1:86:0,85,0:0:0:85,0:3006,0:-266.728,-25.5876,0,-266.728,-25.5876,-266.728	1/2:113:0,66,47:0:0:66,47:2317,1679:-325.514,-137.248,-117.38,-188.62,0,-174.472	1/1:61:0,61,0:0:0:61,0:2158,0:-194.261,-18.3628,0,-194.261,-18.3628,-194.261	1/2:92:0,39,53:0:0:39,53:1389,1896:-268.067,-154.963,-143.223,-113.46,0,-97.5057	1/1:36:0,36,0:0:0:36,0:1271,0:-114.652,-10.8371,0,-114.652,-10.8371,-114.652	1/2:5:0,3,2:0:0:3,2:108,72:-15.0398,-6.23466,-5.33157,-9.16481,0,-8.56275	1/2:87:0,42,45:0:0:42,45:1499,1612:-253.417,-131.768,-119.124,-122.006,0,-108.46	1/2:17:0,7,10:0:0:7,10:231,360:-48.2607,-29.734,-27.6268,-18.8676,0,-15.8573	1/2:17:0,9,8:0:0:9,8:315,284:-49.0589,-23.4951,-20.7858,-25.916,0,-23.5077	1/2:110:0,54,56:0:0:54,56:1906,1996:-317.767,-163.056,-146.801,-155.065,0,-138.207	1/1:28:0,28,0:0:0:28,0:1000,0:-89.9521,-8.42884,0,-89.9521,-8.42884,-89.9521	1/2:7:0,6,1:0:0:6,1:215,36:-20.8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chr12	25636961	.	A	G	49437.6	PASS	AB=0.483288;ABP=18.0346;AC=48;AF=0.255319;AN=188;AO=3020;CIGAR=1X;DP=12711;DPB=12711;DPRA=1.35548;EPP=6560.86;EPPR=21040.2;GTI=1;LEN=1;MEANALT=1.04545;MQM=60;MQMR=59.9939;NS=94;NUMALT=1;ODDS=1.27108;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=107339;QR=344133;RO=9688;RPL=3020;RPP=6560.86;RPPR=21040.2;RPR=0;RUN=1;SAF=3020;SAP=6560.86;SAR=0;SRF=9688;SRP=21040.2;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:46:46,0:46:1636:0:0:0,-13.8474,-147.529	0/0:205:205,0:205:7288:0:0:0,-61.7111,-655.979	0/1:249:134,115:134:4780:115:4104:-294.59,0,-355.402	0/1:319:163,156:163:5763:156:5548:-403.418,0,-422.763	0/1:134:73,61:73:2598:61:2175:-155.678,0,-193.73	0/1:55:32,23:32:1140:23:820:-57.5659,0,-86.3526	0/0:134:134,0:134:4753:0:0:0,-40.338,-427.929	0/1:207:109,98:109:3896:98:3500:-252.898,0,-288.521	0/1:97:48,48:48:1720:48:1719:-125.736,0,-125.827	0/0:135:135,0:135:4794:0:0:0,-40.639,-431.619	0/1:41:23,18:23:812:18:644:-45.9484,0,-61.0587	0/1:65:31,33:31:1100:33:1172:-86.2006,0,-79.7233	0/1:70:31,39:31:1088:39:1388:-104.147,0,-77.1571	0/1:45:19,26:19:672:26:915:-69.1192,0,-47.2605	0/0:57:57,0:57:2028:0:0:0,-17.1587,-182.793	0/1:52:27,25:27:951:25:883:-64.1339,0,-70.2507	0/0:54:54,0:54:1916:0:0:0,-16.2556,-172.717	0/1:51:35,16:35:1244:16:572:-36.4609,0,-96.9121	0/0:43:43,0:43:1536:0:0:0,-12.9443,-138.533	0/0:371:370,1:370:13156:1:36:0,-108.084,-1180.26	0/1:256:118,138:118:4191:138:4892:-363.371,0,-300.31	0/0:182:181,1:181:6424:1:27:0,-52.0877,-575.552	0/0:79:79,0:79:2808:0:0:0,-23.7814,-252.961	0/1:98:38,60:38:1345:60:2144:-163.727,0,-91.8472	0/0:89:89,0:89:3171:0:0:0,-26.7917,-285.615	0/1:406:198,208:198:7027:208:7391:-543.023,0,-510.279	0/0:350:349,1:349:12368:1:36:0,-101.762,-1109.37	0/0:34:34,0:34:1204:0:0:0,-10.235,-108.666	0/1:372:196,176:196:6913:176:6260:-451.514,0,-510.263	0/1:88:35,53:35:1244:53:1883:-143.257,0,-85.774	0/1:223:101,122:101:3602:122:4343:-323.917,0,-257.256	0/1:27:16,11:16:572:11:392:-27.4922,0,-43.6856	0/0:29:29,0:29:1028:0:0:0,-8.72987,-92.833	0/0:15:15,0:15:532:0:0:0,-4.51545,-48.2131	0/1:35:23,12:23:808:12:424:-27.9604,0,-62.5041	0/1:32:11,21:11:396:21:752:-58.3733,0,-26.3498	0/1:182:91,91:91:3234:91:3235:-236.585,0,-236.495	0/0:314:314,0:314:11189:0:0:0,-94.5234,-1006.75	0/0:59:59,0:59:2096:0:0:0,-17.7608,-188.902	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/0:205:204,1:204:7250:1:32:0,-58.5118,-649.36	0/0:36:36,0:36:1262:0:0:0,-10.8371,-113.881	0/0:185:185,0:185:6582:0:0:0,-55.6905,-592.465	0/0:94:94,0:94:3300:0:0:0,-28.2968,-297.222	0/0:54:54,0:54:1914:0:0:0,-16.2556,-172.536	0/1:108:56,52:56:1975:52:1835:-132.916,0,-145.513	0/0:208:207,1:207:7376:1:36:0,-59.016,-660.294	0/1:355:189,166:189:6730:166:5889:-423.259,0,-498.913	0/0:118:118,0:118:4198:0:0:0,-35.5215,-378.003	0/1:377:182,195:182:6491:195:6922:-509.562,0,-470.789	0/0:221:218,3:218:7777:3:108:0,-56.4525,-689.888	0/1:28:19,9:19:659:9:320:-20.7135,0,-51.2035	0/1:246:127,119:127:4508:119:4240:-307.728,0,-331.839	0/1:42:24,18:24:848:18:644:-45.6473,0,-63.9964	0/1:32:17,15:17:600:15:536:-38.9419,0,-44.6962	0/1:243:124,119:124:4411:119:4238:-308.45,0,-324.014	0/0:52:52,0:52:1855:0:0:0,-15.6536,-167.229	0/1:31:22,9:22:788:9:324:-20.1739,0,-61.9129	0/0:32:32,0:32:1139:0:0:0,-9.63296,-102.818	0/0:65:65,0:65:2315:0:0:0,-19.5669,-208.61	0/1:104:49,55:49:1735:55:1955:-144.918,0,-125.127	0/0:14:14,0:14:491:0:0:0,-4.21442,-44.5211	0/0:409:409,0:409:14501:0:0:0,-123.121,-1304.85	0/0:209:206,3:206:7296:3:108:0,-52.8401,-646.622	0/0:71:68,3:68:2428:3:108:0,-11.298,-208.701	0/1:199:102,97:102:3619:97:3425:-248.559,0,-265.985	0/1:267:154,112:154:5475:112:3959:-276.069,0,-412.448	0/0:209:207,2:207:7341:2:63:0,-56.9321,-654.761	0/1:13:10,3:10:360:3:104:-5.78942,0,-28.8309	0/0:139:138,1:138:4936:1:36:0,-38.2449,-440.792	0/1:67:37,30:37:1312:30:1067:-76.1722,0,-98.2127	0/1:27:19,8:19:680:8:284:-17.7755,0,-53.4014	0/0:152:152,0:152:5416:0:0:0,-45.7566,-487.573	0/0:104:103,1:103:3672:1:36:0,-27.7088,-327.087	0/1:154:91,63:91:3218:63:2227:-154.336,0,-243.486	0/0:226:225,1:225:8001:1:36:0,-64.4345,-716.519	0/0:235:234,1:234:8312:1:36:0,-67.1438,-744.5	0/1:130:67,63:67:2384:63:2260:-164.529,0,-175.684	0/1:18:9,9:9:324:9:320:-23.7238,0,-24.0873	0/0:197:197,0:197:6971:0:0:0,-59.3029,-627.462	0/1:270:156,114:156:5552:114:4056:-283.952,0,-418.53	0/0:321:319,2:319:11269:2:72:0,-89.7939,-1007.27	0/0:95:94,1:94:3352:1:36:0,-24.9996,-298.3	0/1:60:30,30:30:1068:30:1059:-77.5586,0,-78.3703	0/0:106:106,0:106:3754:0:0:0,-31.9092,-338.062	0/0:158:157,1:157:5567:1:32:0,-44.3634,-497.957	0/1:59:34,25:34:1208:25:892:-62.8389,0,-91.2653	0/0:89:88,1:88:3144:1:36:0,-23.1934,-279.588	0/1:85:42,43:42:1492:43:1524:-111.866,0,-108.987	0/1:22:13,9:13:451:9:316:-22.1562,0,-34.2972	0/1:67:41,26:41:1451:26:923:-63.2178,0,-110.716	0/1:74:26,48:26:920:48:1702:-131.188,0,-60.8408	0/0:223:223,0:223:7963:0:0:0,-67.1297,-716.695	0/0:95:93,2:93:3293:2:72:0,-21.7611,-289.753
chr12	25687282	.	G	A	28475	PASS	AB=0.491922;ABP=4.97503;AC=45;AF=0.239362;AN=188;AO=1720;CIGAR=1X;DP=6761;DPB=6761;DPRA=1.29127;EPP=3737.94;EPPR=10934.2;GTI=1;LEN=1;MEANALT=1.02041;MQM=59.993;MQMR=59.9984;NS=94;NUMALT=1;ODDS=0.0412266;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=61466;QR=179206;RO=5038;RPL=0;RPP=3737.94;RPPR=10934.2;RPR=1720;RUN=1;SAF=0;SAP=3737.94;SAR=1720;SRF=0;SRP=10942.9;SRR=5038;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:9:9,0:9:306:0:0:0,-2.70927,-27.8686	0/0:131:131,0:131:4650:0:0:0,-39.4349,-418.661	0/1:97:49,48:49:1745:48:1716:-125.526,0,-128.132	0/1:196:108,88:108:3849:88:3123:-222.295,0,-287.604	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/1:17:11,6:11:396:6:216:-14.673,0,-30.8652	0/0:77:77,0:77:2745:0:0:0,-23.1793,-247.291	0/1:106:49,57:49:1745:57:2048:-152.682,0,-125.423	0/1:31:13,18:13:468:18:639:-48.5063,0,-33.1277	0/0:130:130,0:130:4644:0:0:0,-39.1339,-418.121	0/1:65:32,33:32:1143:33:1188:-87.6616,0,-83.6117	0/1:68:34,34:34:1211:34:1211:-88.8255,0,-88.8255	0/1:48:17,31:17:604:31:1112:-85.9419,0,-40.2412	0/1:82:45,37:45:1579:37:1328:-95.1378,0,-117.712	0/0:56:56,0:56:1996:0:0:0,-16.8577,-179.914	0/1:36:19,17:19:684:17:597:-43.2199,0,-51.0532	0/0:79:79,0:79:2800:0:0:0,-23.7814,-252.239	0/1:56:22,34:22:780:34:1215:-92.7981,0,-53.6654	0/0:23:23,0:23:815:0:0:0,-6.92369,-73.6708	0/0:93:92,1:92:3291:1:36:0,-24.3975,-292.811	0/1:88:35,53:35:1260:53:1897:-144.495,0,-87.2148	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	0/0:12:12,0:12:428:0:0:0,-3.61236,-38.8588	0/1:57:32,25:32:1148:25:888:-63.0803,0,-86.4711	0/0:17:17,0:17:590:0:0:0,-5.11751,-53.4242	0/1:273:153,120:153:5440:120:4285:-303.646,0,-407.55	0/0:154:154,0:154:5520:0:0:0,-46.3586,-496.925	0/0:29:29,0:29:1035:0:0:0,-8.72987,-93.4631	0/1:225:114,111:114:4042:111:3983:-290.927,0,-296.236	0/1:142:61,81:61:2192:81:2904:-218.849,0,-154.799	0/1:81:40,41:40:1436:41:1468:-108.033,0,-105.154	0/0:1:1,0:1:32:0:0:0,-0.30103,-3.19931	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:4:4,0:4:129:0:0:0,-1.20412,-11.9277	0/1:4:1,3:1:36:3:108:-8.87105,0,-2.39415	1/1:2:0,2:0:0:2:72:-6.83672,-0.60206,0	0/1:164:90,74:90:3196:74:2648:-189.198,0,-238.494	0/0:84:84,0:84:2964:0:0:0,-25.2865,-266.991	0/0:64:64,0:64:2264:0:0:0,-19.2659,-204.021	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:138:137,0:137:4841:0:0:0,-41.2411,-435.484	0/0:18:18,0:18:639:0:0:0,-5.41854,-57.8382	0/0:34:34,0:34:1207:0:0:0,-10.235,-108.935	0/0:66:66,0:66:2337:0:0:0,-19.868,-210.588	0/0:49:49,0:49:1743:0:0:0,-14.7505,-157.154	0/1:37:15,22:15:540:22:792:-60.4676,0,-37.7984	0/0:75:75,0:75:2679:0:0:0,-22.5772,-241.355	0/1:120:60,60:60:2147:60:2145:-157.192,0,-157.373	0/0:91:91,0:91:3234:0:0:0,-27.3937,-291.282	0/1:167:73,94:73:2565:94:3374:-253.603,0,-180.826	0/0:104:103,0:103:3704:0:0:0,-31.0061,-333.201	0/1:9:2,7:2:72:7:252:-20.3197,0,-4.12745	0/1:73:40,33:40:1419:33:1188:-85.2534,0,-106.031	0/1:27:18,9:18:644:9:324:-21.378,0,-50.1628	0/1:8:5,3:5:180:3:108:-7.66693,0,-14.1438	0/1:116:64,52:64:2287:52:1849:-131.769,0,-171.172	0/0:14:14,0:14:489:0:0:0,-4.21442,-44.3389	0/0:9:9,0:9:320:0:0:0,-2.70927,-29.1424	0/0:22:22,0:22:792:0:0:0,-6.62266,-71.6057	0/0:40:40,0:40:1408:0:0:0,-12.0412,-127.014	0/1:115:63,52:63:2224:52:1862:-133.241,0,-165.804	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:218:218,0:218:7710:0:0:0,-65.6245,-693.937	0/0:134:132,2:132:4676:2:72:0,-33.5013,-414.165	0/0:98:91,7:91:3234:7:252:0,-6.47198,-268.251	0/1:55:32,23:32:1152:23:812:-56.8437,0,-87.4335	0/1:84:40,44:40:1427:44:1563:-115.674,0,-103.44	0/0:49:47,2:47:1673:2:72:0,-7.91375,-144.019	0/1:33:23,10:23:828:10:356:-22.4473,0,-64.9101	0/0:78:78,0:78:2772:0:0:0,-23.4803,-249.72	0/1:94:32,62:32:1133:62:2216:-171.408,0,-73.9798	0/1:19:8,11:8:288:11:396:-30.2632,0,-20.5478	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/0:69:69,0:69:2396:0:0:0,-20.7711,-215.892	0/1:86:48,38:48:1711:38:1361:-96.9017,0,-128.386	0/0:157:157,0:157:5635:0:0:0,-47.2617,-507.268	0/0:34:34,0:34:1215:0:0:0,-10.235,-109.656	0/1:181:109,72:109:3835:72:2545:-174.811,0,-290.861	0/0:2:2,0:2:72:0:0:0,-0.60206,-6.83672	0/0:90:90,0:90:3219:0:0:0,-27.0927,-289.932	0/1:96:49,47:49:1752:47:1655:-120.338,0,-129.065	0/0:135:135,0:135:4840:0:0:0,-40.639,-435.753	0/0:106:106,0:106:3786:0:0:0,-31.9092,-340.935	0/1:39:23,16:23:824:16:568:-39.7111,0,-62.7431	0/0:80:80,0:80:2841:0:0:0,-24.0824,-255.928	0/0:109:108,1:108:3833:1:36:0,-29.214,-341.567	0/1:33:15,18:15:540:18:648:-48.7179,0,-39.0025	0/0:54:54,0:54:1940:0:0:0,-16.2556,-174.876	0/1:49:21,28:21:744:28:1008:-76.2859,0,-52.5339	0/1:23:13,10:13:468:10:360:-25.8206,0,-35.536	0/1:96:50,45:50:1755:45:1615:-116.682,0,-129.273	0/1:64:29,35:29:1016:35:1247:-93.2682,0,-72.483	0/0:61:61,0:61:2188:0:0:0,-18.3628,-197.186	0/0:78:78,0:78:2737:0:0:0,-23.4803,-246.571
chr12	25693983	.	TGATC	TGATG,CGATG,GAATG	209847	PASS	AB=0.522348,0.353783,0.206187;ABP=48.5301,1949.32,4486.92;AC=95,67,24;AF=0.510753,0.360215,0.129032;AN=186;AO=5485,3708,1233;CIGAR=4M1X,1X3M1X,2X2M1X;DP=10497;DPB=11211.6;DPRA=0,59.5511,56.4151;EPP=11085.9,23.2703,18.9045;EPPR=0;GTI=10;LEN=1,5,5;MEANALT=3.1828,3.27273,3.60377;MQM=59.9772,59.4817,49.794;MQMR=0;NS=93;NUMALT=3;ODDS=18208.5;PAIRED=0,0,0;PAIREDR=0;PAO=1190.67,1190.67,1190.67;PQA=39578,39578,39578;PQR=0;PRO=0;QA=195752,130512,43509;QR=0;RO=0;RPL=96,1761,664;RPP=11094.3,23.2703,18.9045;RPPR=0;RPR=5389,1947,569;RUN=1,1,1;SAF=5484,3708,1233;SAP=11904.9,8054.83,2680.44;SAR=1,0,0;SRF=0;SRP=0;SRR=0;TYPE=snp,complex,complex	GT:DP:AD:RO:QR:AO:QA:GL	1/2:24:0,13,11,0:0:0:13,11,0:468,390,0:-70.3167,-32.1274,-28.214,-38.5463,0,-35.2349,-70.3167,-32.1274,-38.5463,-70.3167	1/2:90:0,46,43,0:0:0:46,43,0:1644,1510,0:-256.902,-122.855,-109.008,-134.041,0,-121.097,-256.902,-122.855,-134.041,-256.902	1/3:153:0,88,26,39:0:0:88,26,39:3141,926,1382:-368.137,-112.068,-85.5778,-292.662,-36.5919,-284.835,-256.068,0,-180.593,-244.327	1/2:267:0,166,50,51:0:0:166,50,51:5940,1760,1776:-627.499,-143.165,-93.1937,-484.265,0,-469.213,-485.234,-0.978729,-342.005,-469.881	1/3:37:0,24,3,10:0:0:24,3,10:864,107,360:-99.8256,-29.3268,-22.1021,-91.1033,-20.6049,-90.2002,-70.501,0,-61.7788,-67.4907	1/2:55:0,25,18,12:0:0:25,18,12:888,627,418:-123.34,-50.9783,-43.4526,-72.3632,0,-66.9446,-89.3945,-17.0323,-38.4193,-85.7822	1/2:116:0,61,53,0:0:0:61,53,0:2169,1845,0:-325.095,-148.367,-130.004,-175.116,0,-159.162,-325.095,-148.367,-175.116,-325.095	1/2:100:0,46,34,20:0:0:46,34,20:1629,1184,709:-228.974,-96.2758,-82.4284,-132.697,0,-122.462,-171.788,-39.0891,-75.5128,-165.767	1/3:154:0,69,39,45:0:0:69,39,45:2480,1398,1571:-329.856,-127.53,-106.759,-215.884,-13.5531,-204.143,-202.325,0,-88.3536,-188.779	1/2:144:0,70,73,0:0:0:70,73,0:2500,2581,0:-408.526,-204.733,-183.66,-198.883,0,-176.907,-408.526,-204.733,-198.883,-408.526	1/3:102:0,51,24,26:0:0:51,24,26:1828,855,923:-223.007,-73.9273,-58.5748,-153.32,-4.25799,-146.096,-149.055,0,-79.3733,-141.228	1/3:189:0,94,46,48:0:0:94,46,48:3344,1598,1707:-411.161,-138.904,-110.607,-281.817,-9.56244,-267.97,-272.261,0,-142.918,-257.811	1/2:152:0,85,38,29:0:0:85,38,29:3029,1344,1029:-356.341,-109.459,-83.8711,-246.882,0,-235.443,-272.642,-25.7593,-163.184,-263.912	1/2:96:0,56,21,19:0:0:56,21,19:2000,729,675:-222.315,-59.2523,-42.3946,-163.061,0,-156.739,-167.392,-4.32598,-108.139,-161.673	1/2:139:0,71,66,1:0:0:71,66,1:2524,2358,36:-396.181,-190.527,-169.154,-203.984,0,-184.116,-393.272,-187.619,-201.075,-392.971	1/2:131:0,68,39,24:0:0:68,39,24:2416,1371,835:-308.467,-111.595,-91.1245,-196.876,0,-185.136,-241.011,-44.1394,-129.421,-233.786	1/2:53:0,26,27,0:0:0:26,27,0:924,946,0:-152.618,-77.3203,-69.4935,-75.6509,0,-67.5231,-152.618,-77.3203,-75.6509,-152.618	1/3:54:0,22,14,18:0:0:22,14,18:788,499,641:-116.306,-52.0406,-45.418,-75.631,-11.365,-71.4165,-64.2652,0,-23.591,-58.8466	1/2:69:0,34,35,0:0:0:34,35,0:1212,1230,0:-199.264,-100.467,-90.2316,-99.1513,0,-88.6153,-199.264,-100.467,-99.1513,-199.264	1/2:172:0,78,93,0:0:0:78,93,0:2788,3288,0:-488.035,-261.232,-237.752,-220.411,0,-192.415,-488.035,-261.232,-220.411,-488.035	1/3:244:0,129,56,58:0:0:129,56,58:4605,2003,2029:-540.24,-164.837,-126.004,-376.92,-1.51308,-360.062,-375.401,0,-212.081,-357.941	1/2:42:0,19,21,0:0:0:19,21,0:676,747,0:-114.271,-59.2486,-53.529,-53.4783,0,-47.1566,-114.271,-59.2486,-53.4783,-114.271	1/2:76:0,38,37,0:0:0:38,37,0:1364,1285,0:-213.597,-102.357,-90.918,-109.174,0,-98.0356,-213.597,-102.357,-109.174,-213.597	1/2:75:0,38,20,16:0:0:38,20,16:1364,691,567:-167.396,-56.1286,-44.6895,-111.267,0,-105.246,-121.426,-10.155,-65.2978,-116.61	1/2:72:0,39,33,0:0:0:39,33,0:1383,1128,0:-204.4,-91.7197,-79.9796,-113.027,0,-103.093,-204.4,-91.7197,-113.027,-204.4	1/2:212:0,107,63,41:0:0:107,63,41:3809,2203,1427:-488.311,-177.911,-145.701,-310.284,0,-291.319,-374.076,-63.7245,-196.064,-361.734	1/2:357:0,164,191,0:0:0:164,191,0:5850,6659,0:-1018.44,-541.556,-492.187,-476.911,0,-419.415,-1018.44,-541.556,-476.911,-1018.44	1/2:75:0,39,35,0:0:0:39,35,0:1396,1254,0:-216.1,-102.259,-90.5189,-113.839,0,-103.303,-216.1,-102.259,-113.839,-216.1	1/2:277:0,144,70,62:0:0:144,70,62:5134,2486,2180:-620.82,-202.367,-159.019,-418.37,0,-397.298,-445.545,-27.1598,-243.108,-426.881	1/3:107:0,45,27,34:0:0:45,27,34:1605,952,1203:-227.83,-96.9925,-83.4461,-150.317,-19.4773,-142.189,-130.839,0,-53.326,-120.604	1/3:123:0,73,23,25:0:0:73,23,25:2605,804,881:-281.822,-69.4828,-47.5077,-216.425,-4.12267,-209.501,-212.29,0,-146.897,-204.764	1/3:4:0,3,0,1:0:0:3,0,1:108,0,36:-11.9479,-3.12257,-2.21948,-11.9479,-3.12257,-11.9479,-9.17208,0,-9.17208,-8.87105	1/2:14:0,11,3,0:0:0:11,3,0:396,107,0:-41.3933,-9.07908,-5.76775,-32.6714,0,-31.7683,-41.3933,-9.07908,-32.6714,-41.3933	1/1:3:0,3,0,0:0:0:3,0,0:108,0,0:-10.0752,-0.90309,0,-10.0752,-0.90309,-10.0752,-10.0752,-0.90309,-10.0752,-10.0752	1/3:14:0,6,3,5:0:0:6,3,5:216,108,180:-32.2884,-14.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chr12	25694000	.	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chr12	25764594	.	A	G	16349.1	PASS	AB=0.379885;ABP=394.251;AC=44;AF=0.236559;AN=186;AO=1198;CIGAR=1X;DP=7260;DPB=7260;DPRA=1.01663;EPP=2604.43;EPPR=13166.5;GTI=5;LEN=1;MEANALT=1;MQM=44.4775;MQMR=59.1038;NS=93;NUMALT=1;ODDS=2.11145;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=42498;QR=216345;RO=6062;RPL=0;RPP=2604.43;RPPR=13166.5;RPR=1198;RUN=1;SAF=0;SAP=2604.43;SAR=1198;SRF=0;SRP=13166.5;SRR=6062;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.466	0/0:67:67,0:67:2384:0:0:0,-20.169,-214.65	0/1:102:54,48:54:1932:48:1724:-122.612,0,-143.407	0/1:114:72,42:72:2552:42:1481:-97.1728,0,-195.476	0/1:25:20,5:20:716:5:180:-8.79742,0,-57.0905	0/1:34:25,9:25:892:9:309:-17.5415,0,-69.9921	0/0:63:63,0:63:2260:0:0:0,-18.9649,-203.457	0/1:89:46,43:46:1634:43:1531:-109.126,0,-120.499	0/1:70:43,27:43:1548:27:955:-63.7179,0,-118.347	0/0:82:81,1:81:2912:1:36:0,-21.1359,-258.765	0/1:41:26,15:26:936:15:531:-35.0568,0,-72.085	0/0:111:111,0:111:3920:0:0:0,-33.4143,-352.808	0/1:81:58,23:58:2071:23:820:-48.2853,0,-162.163	0/1:73:46,27:46:1618:27:932:-60.6333,0,-123.908	0/0:90:90,0:90:3200:0:0:0,-27.0927,-288.08	0/1:49:29,20:29:1040:20:716:-48.9301,0,-79.055	0/0:42:42,0:42:1500:0:0:0,-12.6433,-134.621	0/1:34:22,12:22:784:12:428:-28.083,0,-60.6204	0/0:39:39,0:39:1359:0:0:0,-11.7402,-122.519	0/0:59:59,0:59:2112:0:0:0,-17.7608,-190.191	0/1:112:64,48:64:2296:48:1710:-117.401,0,-173.144	0/0:114:114,0:114:4084:0:0:0,-34.3174,-367.411	0/0:102:102,0:102:3638:0:0:0,-30.7051,-326.831	0/1:56:37,19:37:1306:19:680:-43.8172,0,-100.931	0/0:78:78,0:78:2787:0:0:0,-23.4803,-251.024	0/1:173:116,57:116:4151:57:2024:-127.325,0,-321.346	0/0:180:180,0:180:6445:0:0:0,-54.1854,-579.84	0/0:39:39,0:39:1400:0:0:0,-11.7402,-125.052	0/1:142:66,76:66:2350:76:2705:-197.019,0,-168.955	0/1:101:59,42:59:2099:42:1500:-103.023,0,-158.733	0/1:98:64,34:64:2288:34:1183:-75.8017,0,-176.433	1/1:2:0,2:0:0:2:72:-6.74218,-0.60206,0	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4964	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/1:4:3,1:3:104:1:36:-2.3444,0,-8.49869	0/1:9:7,2:7:252:2:72:-4.03291,0,-20.3197	0/1:176:108,68:108:3862:68:2427:-162.015,0,-294.66	0/0:139:139,0:139:4929:0:0:0,-41.8432,-443.623	0/0:40:40,0:40:1436:0:0:0,-12.0412,-129.488	0/0:3:3,0:3:104:0:0:0,-0.90309,-9.69083	0/0:77:77,0:77:2737:0:0:0,-23.1793,-245.758	0/0:28:28,0:28:991:0:0:0,-8.42884,-89.5035	0/0:192:192,0:192:6867:0:0:0,-57.7978,-617.62	0/0:55:55,0:55:1951:0:0:0,-16.5566,-175.837	0/0:50:50,0:50:1788:0:0:0,-15.0515,-161.189	0/1:51:31,20:31:1108:20:712:-47.8798,0,-84.6785	0/0:130:130,0:130:4616:0:0:0,-39.1339,-415.357	0/1:146:88,58:88:3133:58:2056:-137.468,0,-237.841	0/0:65:65,0:65:2331:0:0:0,-19.5669,-209.161	0/1:84:58,26:58:2088:26:919:-56.2833,0,-162.814	0/0:72:72,0:72:2575:0:0:0,-21.6742,-231.878	.:.:.:.:.:.:.:.	0/1:71:55,16:55:1976:16:576:-29.9951,0,-156.623	0/1:45:29,16:29:1032:16:576:-35.7575,0,-79.1141	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/1:86:61,25:61:2165:25:849:-49.6452,0,-169.061	0/0:45:45,0:45:1612:0:0:0,-13.5463,-145.269	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:12:12,0:12:424:0:0:0,-3.61236,-38.4778	0/0:93:93,0:93:3332:0:0:0,-27.9958,-299.933	0/1:110:65,45:65:2310:45:1584:-107.213,0,-174.936	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/0:160:160,0:160:5732:0:0:0,-48.1648,-514.863	0/0:188:187,1:187:6694:1:36:0,-53.0451,-598.207	0/0:68:65,3:65:2336:3:108:0,-10.5342,-200.012	0/1:49:29,20:29:1031:20:720:-48.8244,0,-78.2338	0/1:135:86,49:86:3065:49:1741:-113.871,0,-235.343	0/0:123:121,2:121:4336:2:72:0,-30.2845,-383.648	0/1:29:25,4:25:892:4:140:-4.05763,0,-71.8634	0/0:73:73,0:73:2624:0:0:0,-21.9752,-235.996	0/1:42:19,23:19:671:23:824:-59.9115,0,-48.0725	0/1:22:13,9:13:468:9:324:-22.1213,0,-35.3425	0/0:151:151,0:151:5350:0:0:0,-45.4555,-480.57	0/0:53:53,0:53:1892:0:0:0,-15.9546,-170.378	0/1:108:60,48:60:2128:48:1699:-117.557,0,-159.169	0/0:191:191,0:191:6832:0:0:0,-57.4967,-613.303	0/0:113:113,0:113:4035:0:0:0,-34.0164,-362.516	0/1:95:69,26:69:2465:26:936:-54.2608,0,-193.413	0/1:17:9,8:9:324:8:284:-20.4266,0,-24.3883	0/0:107:107,0:107:3798:0:0:0,-32.2102,-341.846	0/1:118:57,61:57:2030:61:2186:-157.178,0,-147.417	0/0:171:169,2:169:6041:2:57:0,-46.1117,-537.576	0/0:62:62,0:62:2224:0:0:0,-18.6639,-200.165	0/1:68:52,16:52:1864:16:572:-30.6484,0,-147.386	0/0:55:55,0:55:1972:0:0:0,-16.5566,-176.412	0/0:148:148,0:148:5246:0:0:0,-44.5524,-471.103	0/1:25:17,8:17:600:8:273:-17.03,0,-46.803	0/0:81:81,0:81:2859:0:0:0,-24.3834,-257.405	0/1:68:46,22:46:1640:22:758:-47.1874,0,-127.272	0/1:28:19,9:19:676:9:324:-20.669,0,-52.604	0/1:77:53,24:53:1900:24:855:-52.3682,0,-147.906	0/1:65:30,35:30:1076:35:1229:-89.7146,0,-77.5125	0/0:136:136,0:136:4875:0:0:0,-40.9401,-438.616	0/0:99:98,1:98:3504:1:36:0,-26.2535,-311.848
chr12	25796137	.	C	G	110628	PASS	AB=0.511505;ABP=13.8525;AC=47;AF=0.25;AN=188;AO=4855;CIGAR=1X;DP=19202;DPB=19202;DPRA=1.27734;EPP=10545.5;EPPR=31118;GTI=0;LEN=1;MEANALT=1.1746;MQM=59.345;MQMR=59.9622;NS=94;NUMALT=1;ODDS=8.5653;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=172492;QR=507423;RO=14329;RPL=2448;RPP=3.76215;RPPR=32.4827;RPR=2407;RUN=1;SAF=2448;SAP=3.76215;SAR=2407;SRF=6944;SRP=32.4827;SRR=7385;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:103:103,0:103:3656:0:0:0,-31.0061,-329.244	0/0:289:289,0:289:10248:0:0:0,-86.9977,-922.235	0/1:335:159,176:159:5637:176:6279:-463.779,0,-406.607	0/1:329:149,180:149:5299:180:6411:-477.801,0,-378.007	0/1:222:94,128:94:3312:128:4562:-343.752,0,-231.469	0/1:118:58,60:58:2047:60:2123:-155.762,0,-148.98	0/0:285:284,1:284:10022:1:36:0,-82.1953,-898.325	0/1:327:165,162:165:5833:162:5681:-412.713,0,-426.554	0/1:230:126,103:126:4469:103:3652:-259.526,0,-333.087	0/0:200:200,0:200:7099:0:0:0,-60.206,-638.96	0/1:138:73,65:73:2590:65:2299:-165.49,0,-191.807	0/0:197:197,0:197:6939:0:0:0,-59.3029,-624.443	0/1:180:98,82:98:3471:82:2930:-209.627,0,-258.419	0/1:166:94,72:94:3290:72:2555:-180.198,0,-246.343	0/0:166:164,0:164:5846:0:0:0,-49.3689,-525.894	0/1:165:75,90:75:2640:90:3199:-238.356,0,-188.177	0/0:162:162,0:162:5690:0:0:0,-48.7669,-512.223	0/1:143:65,78:65:2294:78:2755:-205.12,0,-163.674	0/0:114:114,0:114:4049:0:0:0,-34.3174,-364.597	0/0:335:334,1:334:11827:1:36:0,-97.2468,-1060.66	0/1:308:149,159:149:5312:159:5643:-414.193,0,-385.497	0/0:170:169,0:169:6010:0:0:0,-50.8741,-540.649	0/0:145:145,0:145:5108:0:0:0,-43.6493,-459.859	0/1:225:137,88:137:4903:88:3137:-214.709,0,-373.679	0/0:184:184,0:184:6523:0:0:0,-55.3895,-587.151	0/1:515:262,253:262:9269:253:8921:-647.702,0,-679.154	0/0:590:590,0:590:20940:0:0:0,-177.608,-1884.09	0/0:78:78,0:78:2731:0:0:0,-23.4803,-246.031	0/1:592:301,290:301:10690:290:10330:-751.248,0,-783.743	0/1:199:96,103:96:3421:103:3653:-269.037,0,-248.198	0/1:206:83,123:83:2938:123:4359:-330.369,0,-202.639	0/1:24:9,15:9:324:15:540:-41.7072,0,-22.2811	0/0:37:37,0:37:1297:0:0:0,-11.1381,-117.029	0/0:14:14,0:14:500:0:0:0,-4.21442,-45.3362	0/1:12:5,7:5:180:7:252:-19.4075,0,-12.9397	0/1:24:20,4:20:716:4:144:-6.0889,0,-57.543	0/1:413:196,217:196:6925:217:7732:-571.585,0,-498.996	0/0:233:231,2:231:8212:2:58:0,-64.6337,-733.589	0/0:153:152,0:152:5393:0:0:0,-45.7566,-485.123	0/1:11:5,6:5:176:6:216:-16.4792,0,-12.8737	0/0:212:212,0:212:7526:0:0:0,-63.8184,-677.384	0/0:86:86,0:86:3050:0:0:0,-25.8886,-274.722	0/0:312:311,1:311:11010:1:36:0,-90.3231,-987.168	0/0:179:178,0:178:6315:0:0:0,-53.5833,-568.087	0/0:148:147,1:147:5164:1:27:0,-41.8527,-462.204	0/1:177:93,84:93:3252:84:3004:-217.278,0,-239.617	0/0:260:259,1:259:9216:1:36:0,-74.67,-825.786	0/1:329:154,175:154:5464:175:6266:-464.762,0,-392.821	0/0:232:232,0:232:8220:0:0:0,-69.839,-739.153	0/1:297:148,149:148:5284:149:5360:-393.07,0,-386.289	0/0:314:314,0:314:11232:0:0:0,-94.5234,-1010.76	0/1:26:11,15:11:383:15:531:-40.2951,0,-26.9765	0/1:299:131,168:131:4642:168:6010:-450.344,0,-327.936	0/1:81:30,50:30:1072:50:1784:-136.401,0,-72.3503	0/1:32:8,24:8:279:24:856:-67.7265,0,-15.8146	0/1:286:139,147:139:4886:147:5233:-384.804,0,-353.796	0/0:83:83,0:83:2939:0:0:0,-24.9855,-264.72	0/1:25:16,9:16:548:9:324:-21.9801,0,-42.1146	0/0:26:26,0:26:919:0:0:0,-7.82678,-83.0253	0/0:198:198,0:198:6998:0:0:0,-59.6039,-629.757	0/1:211:92,118:92:3223:118:4160:-310.922,0,-226.716	0/0:8:8,0:8:284:0:0:0,-2.40824,-25.9034	0/0:235:235,0:235:8324:0:0:0,-70.742,-749.172	0/0:389:385,2:385:13676:2:72:0,-110.022,-1223.79	0/0:157:153,4:153:5435:4:144:0,-33.9481,-475.965	0/1:152:77,74:77:2749:74:2620:-190.199,0,-201.706	0/1:322:157,165:157:5547:165:5830:-427.652,0,-402.426	0/0:205:202,3:202:7129:3:108:0,-51.636,-631.406	0/1:107:49,58:49:1732:58:2072:-154.444,0,-123.954	0/0:160:159,1:159:5621:1:36:0,-44.5665,-502.403	0/1:198:95,103:95:3353:103:3653:-269.327,0,-242.385	0/1:57:26,31:26:913:31:1094:-81.6059,0,-65.3253	0/0:241:241,0:241:8435:0:0:0,-72.5482,-759.141	0/0:154:154,0:154:5452:0:0:0,-46.3586,-490.789	0/1:434:239,195:239:8440:195:6963:-495.399,0,-628.962	0/0:358:357,1:357:12674:1:36:0,-104.17,-1136.8	0/0:160:160,0:160:5633:0:0:0,-48.1648,-507.095	0/1:214:109,105:109:3831:105:3708:-269.273,0,-280.567	0/1:36:18,18:18:631:18:648:-47.0302,0,-46.2786	0/0:300:296,3:296:10513:3:104:0,-80.6617,-936.388	0/1:302:147,155:147:5180:155:5467:-400.995,0,-375.429	0/0:558:557,1:557:19796:1:36:0,-164.376,-1777.57	0/0:202:201,0:201:7083:0:0:0,-60.507,-637.177	0/1:154:75,78:75:2687:78:2773:-203.388,0,-195.657	0/0:196:196,0:196:6910:0:0:0,-59.0019,-621.961	0/0:313:306,6:306:10819:6:212:0,-74.8554,-954.199	0/1:97:43,54:43:1535:54:1908:-142.765,0,-109.242	0/0:159:158,1:158:5540:1:32:0,-44.6645,-495.529	0/1:165:71,93:71:2531:93:3302:-247.492,0,-178.312	0/1:185:93,91:93:3281:91:3212:-233.5,0,-239.762	0/1:201:106,95:106:3675:95:3365:-242.531,0,-270.403	0/1:162:53,109:53:1860:109:3899:-302.258,0,-118.91	0/0:212:212,0:212:7572:0:0:0,-63.8184,-681.519	0/0:259:257,2:257:9134:2:68:0,-71.5091,-815.582
chr12	25824873	.	CCTGT	TCTGC,TCTGT	203176	PASS	AB=0.537397,0.457847;ABP=59.2057,74.407;AC=140,46;AF=0.752688,0.247312;AN=186;AO=7700,2136;CIGAR=1X3M1X,1X4M;DP=9900;DPB=9900;DPRA=0,1.07291;EPP=16679.9,4606.6;EPPR=11.6962;GTI=2;LEN=5,1;MEANALT=2.16129,2.46296;MQM=45.0255,58.6433;MQMR=60;NS=93;NUMALT=2;ODDS=2.81586;PAIRED=0,0;PAIREDR=0;PAO=0,0;PQA=0,0;PQR=0;PRO=0;QA=269866,75616;QR=144;RO=4;RPL=7695,2132;RPP=16679.9,4606.6;RPPR=11.6962;RPR=5,4;RUN=1,1;SAF=0,0;SAP=16723.3,4641.28;SAR=7700,2136;SRF=0;SRP=11.6962;SRR=4;TYPE=complex,snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:72:0,69,1:0:0:69,1:2380,36:-209.776,-20.7711,0,-206.839,-17.8156,-206.538	1/1:168:0,168,0:0:0:168,0:5907,0:-518.072,-50.573,0,-518.072,-50.573,-518.072	1/2:163:1,87,74:1:36:87,74:3044,2606:-448.469,-208.88,-185.628,-237.011,0,-217.672	1/2:262:0,141,119:0:0:141,119:4961,4244:-743.275,-345.968,-303.522,-397.355,0,-361.532	1/2:201:0,108,92:0:0:108,92:3802,3235:-566.594,-263.066,-230.555,-303.522,0,-275.827	1/2:62:0,37,24:0:0:37,24:1306,849:-171.157,-69.1953,-58.0572,-102.056,0,-94.8315	1/1:144:0,142,0:0:0:142,0:4993,0:-444.173,-42.7463,0,-444.173,-42.7463,-444.173	1/2:125:0,70,54:0:0:70,54:2442,1900:-347.151,-154.122,-133.05,-193.067,0,-176.811	1/2:128:0,62,65:0:0:62,65:2145,2290:-354.171,-186.404,-167.74,-167.82,0,-148.253	1/1:80:0,79,0:0:0:79,0:2792,0:-246.602,-23.7814,0,-246.602,-23.7814,-246.602	1/2:27:0,15,12:0:0:15,12:532,428:-78.0487,-35.2464,-30.731,-43.1561,0,-39.5437	1/1:32:0,30,0:0:0:30,0:1058,0:-93.16,-9.0309,0,-93.16,-9.0309,-93.16	1/2:33:0,17,16:0:0:17,16:601,576:-93.9283,-47.3194,-42.2019,-46.958,0,-42.1416	1/2:21:0,10,11:0:0:10,11:353,388:-59.8538,-31.946,-28.9357,-28.2556,0,-24.9443	1/1:38:0,38,0:0:0:38,0:1344,0:-118.621,-11.4391,0,-118.621,-11.4391,-118.621	1/2:22:0,18,4:0:0:18,4:613,140:-60.344,-11.7401,-6.32155,-48.9508,0,-47.7466	1/1:35:0,35,0:0:0:35,0:1225,0:-107.83,-10.5361,0,-107.83,-10.5361,-107.83	1/2:22:0,11,10:0:0:11,10:396,356:-60.2598,-28.8713,-25.5599,-31.3889,0,-28.3786	1/1:8:0,8,0:0:0:8,0:286,0:-25.518,-2.40824,0,-25.518,-2.40824,-25.518	1/1:299:0,298,0:0:0:298,0:10512,0:-929.559,-89.7069,0,-929.559,-89.7069,-929.559	1/2:138:0,77,61:0:0:77,61:2705,2137:-388.483,-173.947,-150.768,-214.883,0,-196.52	1/1:275:0,270,1:0:0:270,1:9456,36:-841.557,-81.2781,0,-838.62,-78.3305,-838.319	1/1:130:0,129,0:0:0:129,0:4515,0:-400.082,-38.8329,0,-400.082,-38.8329,-400.082	1/2:159:0,76,83:0:0:76,83:2635,2937:-449.473,-239.312,-216.434,-210.508,0,-185.522	1/1:105:0,105,0:0:0:105,0:3662,0:-323.323,-31.6082,0,-323.323,-31.6082,-323.323	1/2:357:0,183,173:0:0:183,173:6395,6132:-1013.78,-499.191,-444.103,-514.671,0,-462.593	1/2:200:0,109,90:0:0:109,90:3837,3197:-567.06,-260.289,-227.477,-306.831,0,-279.738	1/1:15:0,15,0:0:0:15,0:535,0:-47.6673,-4.51545,0,-47.6673,-4.51545,-47.6673	1/2:443:2,258,182:2:72:258,182:9034,6440:-1244.4,-518.317,-446.527,-720.798,0,-671.885	1/2:168:0,90,78:0:0:90,78:3158,2784:-478.654,-227.175,-200.083,-251.829,0,-228.349	1/2:164:0,88,75:0:0:88,75:3084,2668:-464.489,-217.382,-190.891,-247.149,0,-224.572	1/2:7:0,2,5:0:0:2,5:69,176:-19.9265,-14.4037,-13.8016,-5.86473,0,-4.35958	1/1:20:0,20,0:0:0:20,0:703,0:-62.7565,-6.0206,0,-62.7565,-6.0206,-62.7565	.:.:.:.:.:.:.:.	1/1:9:0,9,0:0:0:9,0:319,0:-27.9723,-2.70927,0,-27.9723,-2.70927,-27.9723	1/2:5:0,4,1:0:0:4,1:138,36:-14.2628,-3.29624,-2.09212,-11.3221,0,-11.021	1/2:105:0,61,44:0:0:61,44:2141,1568:-300.691,-128.165,-109.803,-172.879,0,-159.633	1/1:243:0,241,0:0:0:241,0:8503,0:-748.988,-72.5482,0,-748.988,-72.5482,-748.988	1/1:22:0,22,0:0:0:22,0:775,0:-67.7204,-6.62266,0,-67.7204,-6.62266,-67.7204	1/1:1:0,1,0:0:0:1,0:36,0:-3.54852,-0.30103,0,-3.54852,-0.30103,-3.54852	1/1:199:0,195,3:0:0:195,3:6822,108:-602.8,-58.7009,0,-593.987,-49.8849,-593.084	1/1:24:0,24,0:0:0:24,0:836,0:-73.7082,-7.22472,0,-73.7082,-7.22472,-73.7082	1/1:275:0,269,0:0:0:269,0:9426,0:-830.99,-80.9771,0,-830.99,-80.9771,-830.99	1/1:26:0,26,0:0:0:26,0:902,0:-80.7375,-7.82678,0,-80.7375,-7.82678,-80.7375	1/1:31:0,30,1:0:0:30,1:1025,36:-91.1725,-9.0309,0,-88.2344,-5.73366,-87.9334	1/2:74:0,41,31:0:0:41,31:1438,1062:-202.162,-86.2536,-73.9114,-115.955,0,-106.623	1/1:162:0,162,0:0:0:162,0:5669,0:-494.661,-48.7669,0,-494.661,-48.7669,-494.661	1/2:240:0,125,113:0:0:125,113:4379,3993:-676.473,-325.117,-287.488,-351.414,0,-317.397	1/1:158:0,156,1:0:0:156,1:5479,36:-484.936,-46.9607,0,-481.999,-43.9794,-481.698	1/2:133:0,60,73:0:0:60,73:2089,2585:-375.637,-210.773,-192.712,-165.209,0,-143.234	1/1:198:0,197,0:0:0:197,0:6936,0:-618.835,-59.3029,0,-618.835,-59.3029,-618.835	1/2:10:0,6,4:0:0:6,4:214,144:-28.7021,-12.1095,-10.3033,-16.9449,0,-15.7408	1/2:140:0,78,62:0:0:78,62:2716,2189:-392.076,-178.47,-154.989,-213.953,0,-195.289	1/2:33:0,15,18:0:0:15,18:526,648:-95.7662,-53.2048,-48.6894,-42.915,0,-37.4965	1/2:15:0,5,10:0:0:5,10:172,345:-41.9684,-28.2904,-26.7853,-14.0177,0,-11.0074	1/2:107:0,53,54:0:0:53,54:1875,1930:-307.611,-157.594,-141.64,-150.369,0,-134.113	1/1:56:0,54,0:0:0:54,0:1878,0:-166.815,-16.2556,0,-166.815,-16.2556,-166.815	1/2:11:0,4,7:0:0:4,7:139,252:-32.1203,-20.9217,-19.7176,-11.5487,0,-9.44149	1/1:24:0,22,0:0:0:22,0:775,0:-68.8734,-6.62266,0,-68.8734,-6.62266,-68.8734	1/1:109:0,107,0:0:0:107,0:3724,0:-327.113,-32.2102,0,-327.113,-32.2102,-327.113	1/2:68:0,33,35:0:0:33,35:1142,1241:-192.986,-101.371,-91.4372,-91.9628,0,-81.4267	1/1:8:0,8,0:0:0:8,0:287,0:-25.8638,-2.40824,0,-25.8638,-2.40824,-25.8638	1/1:241:0,240,1:0:0:240,1:8378,36:-747.592,-72.2472,0,-744.655,-68.95,-744.354	1/1:238:0,234,4:0:0:234,4:8194,144:-722.062,-70.441,0,-710.312,-58.3315,-709.108	1/1:77:0,71,6:0:0:71,6:2487,216:-219.34,-21.3731,0,-201.714,-3.3888,-199.908	1/2:144:0,80,64:0:0:80,64:2798,2254:-406.383,-183.563,-159.481,-223.168,0,-203.902	1/2:202:0,111,91:0:0:111,91:3883,3161:-569.07,-256.805,-223.391,-312.611,0,-285.217	1/1:151:0,149,0:0:0:149,0:5225,0:-464.227,-44.8535,0,-464.227,-44.8535,-464.227	1/2:8:0,4,4:0:0:4,4:136,144:-23.005,-12.1095,-10.9054,-11.2436,0,-10.0395	1/1:84:0,82,0:0:0:82,0:2884,0:-253.204,-24.6845,0,-253.204,-24.6845,-253.204	1/2:50:0,29,20:0:0:29,20:1013,716:-139.777,-58.3883,-49.6585,-81.3842,0,-75.3636	1/2:21:0,9,12:0:0:9,12:313,428:-60.4701,-35.2464,-32.5372,-25.5736,0,-21.9612	1/1:168:0,165,0:0:0:165,0:5760,0:-499.601,-49.67,0,-499.601,-49.67,-499.601	1/1:65:0,65,0:0:0:65,0:2278,0:-200.239,-19.567,0,-200.239,-19.567,-200.239	1/2:187:1,107,79:1:36:107,79:3780,2820:-526.092,-226.703,-197.43,-296.745,0,-275.901	1/1:249:0,249,0:0:0:249,0:8794,0:-781.432,-74.9565,0,-781.432,-74.9565,-781.432	1/1:194:0,193,0:0:0:193,0:6701,0:-587.265,-58.0988,0,-587.265,-58.0988,-587.265	1/2:90:0,47,43:0:0:47,43:1653,1540:-255.973,-125.786,-111.637,-130.537,0,-117.593	1/2:13:0,9,4:0:0:9,4:300,144:-35.8593,-12.0933,-9.38403,-24.1154,0,-22.9113	1/1:142:0,142,0:0:0:142,0:4944,0:-436.154,-42.7463,0,-436.154,-42.7463,-436.154	1/2:111:0,64,47:0:0:64,47:2262,1657:-312.386,-134.842,-115.576,-177.891,0,-163.742	1/1:299:0,298,0:0:0:298,0:10406,0:-923.414,-89.7069,0,-923.414,-89.7069,-923.414	1/1:75:0,74,0:0:0:74,0:2614,0:-232.35,-22.2762,0,-232.35,-22.2762,-232.35	1/2:16:0,9,7:0:0:9,7:313,248:-45.713,-20.557,-17.8477,-25.5057,0,-23.3985	1/1:46:0,46,0:0:0:46,0:1588,0:-140.31,-13.8474,0,-140.31,-13.8474,-140.31	1/1:69:0,69,0:0:0:69,0:2418,0:-215.775,-20.7711,0,-215.775,-20.7711,-215.775	1/2:21:0,13,8:0:0:13,8:457,284:-59.869,-23.4883,-19.5749,-36.7315,0,-34.3233	1/1:43:0,42,0:0:0:42,0:1485,0:-129.205,-12.6433,0,-129.205,-12.6433,-129.205	1/2:40:0,21,19:0:0:21,19:749,672:-114.402,-54.9953,-48.6737,-59.7576,0,-54.038	1/2:12:0,6,6:0:0:6,6:208,212:-34.1964,-17.6186,-15.8124,-16.9247,0,-15.1185	1/2:53:0,30,23:0:0:30,23:1060,816:-150.892,-66.838,-57.8071,-84.4038,0,-77.4802	1/2:15:0,3,11:0:0:3,11:108,396:-41.0127,-32.2859,-31.3828,-8.7273,0,-5.41597	1/1:123:0,122,0:0:0:122,0:4273,0:-378.544,-36.7257,0,-378.544,-36.7257,-378.544	1/1:44:0,44,0:0:0:44,0:1563,0:-139.031,-13.2453,0,-139.031,-13.2453,-139.031
chr12	25827953	.	G	T	32087.4	PASS	AB=0.486139;ABP=9.63198;AC=49;AF=0.260638;AN=188;AO=1956;CIGAR=1X;DP=8046;DPB=8046;DPRA=1.20023;EPP=4250.41;EPPR=13225.1;GTI=1;LEN=1;MEANALT=1;MQM=59.9796;MQMR=59.9941;NS=94;NUMALT=1;ODDS=4.92306;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69803;QR=216103;RO=6089;RPL=0;RPP=4250.41;RPPR=13225.1;RPR=1956;RUN=1;SAF=0;SAP=4250.41;SAR=1956;SRF=0;SRP=13225.1;SRR=6089;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:31:31,0:31:1072:0:0:0,-9.33193,-96.7851	0/0:141:141,0:141:5048:0:0:0,-42.4452,-454.465	0/1:81:48,33:48:1697:33:1167:-80.953,0,-128.631	0/1:137:70,67:70:2498:67:2380:-173.217,0,-183.831	0/1:58:33,25:33:1176:25:896:-63.5002,0,-88.688	0/1:72:29,43:29:1036:43:1509:-114.428,0,-71.8798	0/0:144:144,0:144:5105:0:0:0,-43.3483,-459.594	0/1:130:73,57:73:2592:57:2032:-144.019,0,-194.393	0/1:65:21,44:21:741:44:1566:-121.663,0,-47.4446	0/0:124:124,0:124:4376:0:0:0,-37.3277,-394.013	0/1:51:27,24:27:940:24:855:-61.9176,0,-69.5583	0/0:76:76,0:76:2705:0:0:0,-22.8783,-243.693	0/1:79:40,39:40:1428:39:1383:-100.987,0,-105.036	0/1:77:39,38:39:1377:38:1360:-99.5213,0,-101.047	0/0:64:64,0:64:2271:0:0:0,-19.2659,-204.652	0/1:50:22,28:22:746:28:999:-75.173,0,-52.4	0/0:68:68,0:68:2406:0:0:0,-20.47,-216.794	0/1:45:21,24:21:744:24:864:-64.5362,0,-53.738	0/0:25:25,0:25:896:0:0:0,-7.52575,-80.9604	0/0:117:117,0:117:4153:0:0:0,-35.2205,-373.955	0/1:106:40,66:40:1414:66:2376:-182.188,0,-95.6466	0/0:76:76,0:76:2694:0:0:0,-22.8783,-242.705	0/0:145:145,0:145:5139:0:0:0,-43.6493,-462.654	0/1:74:47,27:47:1662:27:952:-63.719,0,-127.59	0/0:82:82,0:82:2931:0:0:0,-24.6845,-264.024	0/1:353:198,155:198:7055:155:5547:-393.077,0,-528.749	0/1:146:79,67:79:2798:67:2395:-171.856,0,-208.11	0/0:30:30,0:30:1080:0:0:0,-9.0309,-97.5132	0/1:147:68,79:68:2435:79:2800:-207.988,0,-175.153	0/1:161:88,73:88:3134:73:2624:-187.941,0,-233.817	0/1:152:87,65:87:3083:65:2327:-163.933,0,-231.941	0/1:10:7,3:7:248:3:108:-7.06487,0,-19.6539	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	1/1:5:0,5:0:0:5:180:-16.5521,-1.50515,0	0/1:7:3,4:3:99:4:144:-11.2064,0,-7.12937	0/1:171:89,82:89:3171:82:2936:-212.99,0,-234.139	0/0:251:251,0:251:8924:0:0:0,-75.5585,-803.144	0/0:50:50,0:50:1775:0:0:0,-15.0515,-160.032	0/1:8:3,5:3:104:5:176:-13.7768,0,-7.29457	0/0:90:85,5:85:2977:5:180:0,-10.5406,-251.608	0/0:31:31,0:31:1104:0:0:0,-9.33193,-99.6706	0/0:95:95,0:95:3399:0:0:0,-28.5978,-306.122	0/0:61:61,0:61:2159:0:0:0,-18.3628,-194.577	0/0:60:60,0:60:2104:0:0:0,-18.0618,-189.628	0/1:145:68,77:68:2409:77:2756:-204.633,0,-173.416	0/0:116:116,0:116:4112:0:0:0,-34.9195,-370.266	0/1:149:72,77:72:2577:77:2729:-200.993,0,-187.324	0/0:151:150,1:150:5362:1:36:0,-41.8573,-479.114	0/1:131:74,57:74:2626:57:2036:-144.077,0,-197.152	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	0/1:81:34,47:34:1201:47:1688:-127.824,0,-84.0102	0/1:27:15,12:15:540:12:417:-29.7324,0,-40.8087	0/1:18:8,10:8:280:10:360:-27.3258,0,-20.1208	0/1:53:25,28:25:883:28:996:-74.0003,0,-63.8329	0/0:48:48,0:48:1691:0:0:0,-14.4494,-152.473	0/1:14:10,4:10:345:4:144:-9.0992,0,-27.1664	0/0:13:13,0:13:449:0:0:0,-3.91339,-40.7375	0/0:76:76,0:76:2719:0:0:0,-22.8783,-244.953	0/1:112:60,52:60:2116:52:1868:-134.684,0,-156.992	0/0:11:11,0:11:388:0:0:0,-3.31133,-35.2574	0/0:206:205,1:205:7337:1:36:0,-58.4139,-656.779	0/0:263:258,5:258:9209:5:180:0,-62.6188,-812.23	0/0:61:57,4:57:2016:4:144:0,-5.04921,-168.397	0/1:34:15,19:15:521:19:676:-50.933,0,-36.9813	0/1:170:80,90:80:2857:90:3191:-236.24,0,-206.191	0/0:126:123,3:123:4416:3:108:0,-27.8546,-387.536	0/1:24:13,11:13:460:11:392:-28.3953,0,-34.5107	0/0:70:70,0:70:2448:0:0:0,-21.0721,-220.572	0/1:94:48,46:48:1697:46:1648:-120.312,0,-124.717	0/1:29:13,16:13:464:16:561:-42.0863,0,-33.3676	0/0:114:114,0:114:4012:0:0:0,-34.3174,-361.268	0/0:39:39,0:39:1359:0:0:0,-11.7402,-122.605	0/1:200:102,98:102:3635:98:3504:-255.356,0,-267.15	0/0:96:95,0:95:3359:0:0:0,-28.5978,-302.167	0/0:113:113,0:113:4017:0:0:0,-34.0164,-361.717	0/1:96:54,42:54:1909:42:1504:-106.756,0,-143.187	0/1:14:10,4:10:352:4:144:-9.0992,0,-27.8038	0/0:68:68,0:68:2423:0:0:0,-20.47,-218.326	0/1:84:50,34:50:1771:34:1211:-84.009,0,-134.386	0/0:160:158,2:158:5588:2:72:0,-41.3281,-496.209	0/0:109:109,0:109:3864:0:0:0,-32.8123,-347.85	0/1:47:29,18:29:1040:18:644:-44.1422,0,-79.7636	0/0:80:80,0:80:2795:0:0:0,-24.0824,-251.791	0/0:110:109,1:109:3879:1:36:0,-29.515,-345.705	0/1:37:19,18:19:684:18:644:-47.1525,0,-50.7522	0/0:70:70,0:70:2447:0:0:0,-21.0721,-220.481	0/1:63:34,29:34:1209:29:1036:-74.589,0,-90.1492	0/1:40:23,17:23:787:17:608:-43.0108,0,-59.1012	0/1:66:31,35:31:1108:35:1260:-93.8375,0,-80.163	0/1:50:14,36:14:482:36:1274:-99.91,0,-28.6546	0/0:80:80,0:80:2850:0:0:0,-24.0824,-256.737	0/0:81:81,0:81:2866:0:0:0,-24.3834,-258.178
chr12	25870976	.	T	A	147790	PASS	AB=0.381571;ABP=3789.5;AC=95;AF=0.505319;AN=188;AO=11874;CIGAR=1X;DP=31097;DPB=31097;DPRA=0;EPP=25735;EPPR=41671.4;GTI=1;LEN=1;MEANALT=1.05319;MQM=31.3957;MQMR=34.1184;NS=94;NUMALT=1;ODDS=51.2967;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=422976;QR=686096;RO=19217;RPL=6267;RPP=82.6712;RPPR=2609.73;RPR=5607;RUN=1;SAF=6273;SAP=85.5943;SAR=5601;SRF=12017;SRP=2624.95;SRR=7200;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:154:126,28:126:4457:28:995:-18.2935,0,-240.76	0/1:496:380,116:380:13620:116:4100:-153.914,0,-648.263	0/1:373:274,99:274:9798:99:3531:-157.482,0,-531.426	0/1:805:433,372:433:15490:372:13252:-614.184,0,-689.541	0/1:326:142,184:142:5092:184:6600:-330.75,0,-188.154	0/1:177:101,76:101:3599:76:2710:-163.971,0,-203.119	0/1:547:257,290:257:9195:290:10325:-532.025,0,-431.693	0/1:544:428,116:428:15280:116:4139:-145.376,0,-761.684	0/1:428:277,151:277:9906:151:5343:-297.948,0,-484.64	0/1:495:308,187:308:10945:187:6660:-234.221,0,-536.582	0/1:269:189,80:189:6773:80:2812:-103.787,0,-277.799	0/1:272:187,85:187:6635:85:3035:-180.176,0,-323.678	0/1:182:127,55:127:4568:55:1959:-113.629,0,-229.071	0/1:171:98,73:98:3464:73:2560:-116.46,0,-130.161	0/1:242:141,101:141:5023:101:3612:-170.203,0,-213.77	0/1:156:99,57:99:3539:57:2026:-98.0975,0,-129.353	0/1:195:145,50:145:5158:50:1796:-95.9157,0,-236.508	0/1:126:95,31:95:3400:31:1097:-54.8031,0,-133.168	0/1:165:124,41:124:4434:41:1446:-74.4411,0,-192.278	0/1:859:377,482:377:13489:482:17174:-909.866,0,-654.355	0/1:488:230,258:230:8194:258:9167:-490.373,0,-341.719	0/1:217:150,67:150:5344:67:2395:-71.2979,0,-280.972	0/1:290:165,125:165:5920:125:4439:-239.988,0,-318.075	0/1:326:172,154:172:6118:154:5498:-263.288,0,-223.893	0/1:328:246,81:246:8692:81:2896:-111.194,0,-439.845	0/1:1044:666,377:666:23757:377:13417:-462.234,0,-1160.66	0/1:887:494,393:494:17642:393:14028:-640.79,0,-827.201	0/1:116:85,31:85:3026:31:1103:-44.8253,0,-128.238	0/1:723:434,289:434:15464:289:10320:-469.959,0,-770.464	0/1:402:222,180:222:7934:180:6415:-285.784,0,-405.546	0/1:479:234,245:234:8353:245:8666:-433.716,0,-398.696	0/1:17:7,10:7:252:10:356:-15.5237,0,-17.8758	0/1:48:27,21:27:964:21:748:-39.7122,0,-57.0568	0/1:31:9,22:9:324:22:792:-55.1557,0,-13.9388	0/1:37:14,23:14:495:23:828:-52.0926,0,-17.2865	0/1:44:22,22:22:788:22:775:-48.3442,0,-45.8316	0/1:775:524,250:524:18660:250:8875:-318.845,0,-844.221	0/1:486:257,229:257:9197:229:8152:-390.447,0,-430.761	0/1:173:141,32:141:5051:32:1112:-43.3276,0,-206.502	1/1:15:1,14:1:36:14:504:-26.9872,-0.917175,0	0/1:449:291,158:291:10386:158:5645:-217.54,0,-515.593	0/1:99:73,26:73:2612:26:928:-34.7604,0,-120.684	0/1:490:329,160:329:11706:160:5686:-244.375,0,-595.876	0/1:274:210,64:210:7511:64:2292:-47.7991,0,-361.408	0/1:260:158,102:158:5620:102:3581:-137.126,0,-246.605	0/1:286:198,88:198:7068:88:3156:-106.115,0,-407.209	0/1:286:180,106:180:6439:106:3780:-210.707,0,-266.679	0/1:618:316,302:316:11283:302:10812:-485.504,0,-569.023	0/1:430:253,177:253:9059:177:6274:-264.721,0,-408.365	0/1:495:333,162:333:11940:162:5791:-202.974,0,-571.992	0/1:751:442,309:442:15725:309:11052:-419.323,0,-677.901	0/1:28:5,23:5:180:23:824:-51.315,0,-6.04028	0/1:401:285,116:285:10199:116:4123:-187.488,0,-558.974	0/1:160:79,81:79:2824:81:2882:-155.401,0,-126.602	0/1:31:18,13:18:648:13:468:-24.0495,0,-34.5505	0/1:304:181,123:181:6442:123:4391:-192.433,0,-291.359	0/1:244:120,124:120:4296:124:4393:-216.15,0,-214.388	0/1:39:14,25:14:500:25:873:-31.0562,0,-23.988	0/1:54:29,25:29:1032:25:896:-42.0445,0,-51.5186	0/1:186:145,41:145:5195:41:1460:-46.9547,0,-300.335	0/1:385:244,141:244:8669:141:5043:-218.483,0,-400.102	0/1:19:7,12:7:252:12:428:-11.4197,0,-12.921	0/1:478:246,232:246:8798:232:8290:-328.089,0,-418.371	0/1:717:422,295:422:15065:295:10562:-465.616,0,-645.183	0/1:272:191,81:191:6824:81:2882:-104.126,0,-345.887	0/1:319:147,172:147:5233:172:6164:-302.588,0,-211.973	0/1:768:443,325:443:15824:325:11587:-475.977,0,-734.04	0/1:257:189,68:189:6750:68:2427:-83.4563,0,-384.134	0/1:113:59,54:59:2120:54:1927:-103.096,0,-105.042	0/1:193:128,65:128:4588:65:2309:-132.171,0,-252.935	0/1:261:214,47:214:7597:47:1679:-12.9593,0,-390.564	0/1:77:35,42:35:1260:42:1484:-77.3932,0,-65.2169	0/1:335:212,123:212:7579:123:4371:-259.996,0,-392.256	0/1:311:219,92:219:7780:92:3283:-165.076,0,-376.156	0/1:737:401,336:401:14298:336:11946:-526.228,0,-772.152	0/1:610:347,261:347:12408:261:9329:-416.07,0,-607.448	0/1:346:223,123:223:7976:123:4382:-214.047,0,-419.662	0/1:469:285,184:285:10196:184:6549:-359.043,0,-520.77	0/1:32:23,9:23:820:9:324:-12.4341,0,-42.6886	0/1:508:266,242:266:9528:242:8643:-405.631,0,-417.454	0/1:245:123,122:123:4415:122:4335:-267.057,0,-164.871	0/1:772:485,287:485:17344:287:10277:-378.771,0,-792.305	0/1:367:296,71:296:10555:71:2513:-51.5646,0,-471.637	0/1:145:118,27:118:4220:27:947:-21.73,0,-206.421	0/1:218:179,39:179:6412:39:1385:-18.9601,0,-298.356	0/1:410:327,83:327:11671:83:2929:-67.3541,0,-557.718	0/1:92:66,26:66:2350:26:902:-49.7649,0,-106.642	0/1:248:191,57:191:6793:57:2035:-100.65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chr12	25870985	.	G	C	164518	PASS	AB=0.41128;ABP=2111.02;AC=93;AF=0.494681;AN=188;AO=12682;CIGAR=1X;DP=30850;DPB=30850;DPRA=0;EPP=27524.3;EPPR=39376.1;GTI=1;LEN=1;MEANALT=1.24468;MQM=39.1938;MQMR=28.7377;NS=94;NUMALT=1;ODDS=57.8852;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=451510;QR=645979;RO=18140;RPL=5903;RPP=134.404;RPPR=4676.05;RPR=6779;RUN=1;SAF=5901;SAP=135.607;SAR=6781;SRF=12194;SRP=4676.05;SRR=5946;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/1:153:58,95:58:2088:95:3395:-184.946,0,-77.9794	0/1:496:271,225:271:9675:225:8007:-319.917,0,-474.418	0/1:371:166,205:166:5927:205:7294:-381.245,0,-299.726	0/1:810:520,290:520:18546:290:10364:-395.878,0,-924.162	0/1:315:253,62:253:9028:62:2228:-57.7343,0,-441.365	0/1:177:115,62:115:4102:62:2187:-122.112,0,-241.463	0/1:539:332,207:332:11833:207:7361:-328.878,0,-619.829	0/1:543:256,287:256:9095:287:10207:-470.155,0,-436.023	0/1:423:204,219:204:7238:219:7795:-372.37,0,-398.226	0/1:496:293,202:293:10474:202:7219:-319.679,0,-448.628	0/1:263:146,117:146:5186:117:4156:-167.353,0,-199.665	0/1:271:124,147:124:4373:147:5206:-264.657,0,-230.864	0/1:181:83,97:83:2963:97:3427:-171.428,0,-160.158	0/1:169:109,60:109:3848:60:2110:-81.1437,0,-161.942	0/1:242:163,78:163:5808:78:2792:-120.381,0,-264.946	0/1:158:121,37:121:4303:37:1320:-46.4315,0,-186.246	0/1:192:108,84:108:3855:84:2979:-141.661,0,-182.846	0/1:125:88,37:88:3111:37:1324:-54.8294,0,-127.586	0/1:164:82,81:82:2897:81:2905:-130.719,0,-134.478	0/1:851:586,264:586:20902:264:9418:-457.02,0,-1087.77	0/1:481:367,112:367:13072:112:3982:-142.937,0,-674.503	0/1:219:92,127:92:3283:127:4544:-234.88,0,-119.765	0/1:291:140,151:140:4955:151:5369:-278.674,0,-274.752	0/1:328:247,81:247:8805:81:2908:-74.8008,0,-420.424	0/1:326:169,157:169:6002:157:5572:-263.642,0,-286.233	0/1:1031:610,417:610:21850:417:14873:-649.719,0,-947.929	0/1:875:493,382:493:17582:382:13578:-606.62,0,-851.523	0/1:116:52,64:52:1843:64:2292:-98.5044,0,-74.2209	0/1:715:378,337:378:13448:337:12038:-582.925,0,-641.21	0/1:400:233,167:233:8352:167:5885:-280.849,0,-410.152	0/1:476:369,107:369:13155:107:3827:-157.568,0,-681.841	0/1:17:12,5:12:432:5:180:-11.4346,0,-22.005	0/1:49:29,20:29:1040:20:720:-43.4731,0,-57.8193	0/1:31:24,7:24:845:7:228:-7.29803,0,-58.1066	0/1:38:31,7:31:1094:7:244:-3.35578,0,-66.6607	0/1:44:31,13:31:1097:13:468:-25.3568,0,-69.0896	0/1:769:414,355:414:14737:355:12620:-571.643,0,-581.301	0/1:479:309,170:309:10948:170:6096:-255.38,0,-545.728	0/1:173:117,55:117:4143:55:1964:-92.0615,0,-156.099	0/0:17:16,1:16:561:1:36:0,-1.51923,-32.0107	0/1:445:217,228:217:7714:228:8138:-390.513,0,-337.594	0/1:97:39,57:39:1380:57:2018:-94.0309,0,-55.4268	0/1:478:231,247:231:8253:247:8815:-438.769,0,-387.326	0/1:273:94,177:94:3342:177:6319:-302.723,0,-93.9514	0/1:252:160,92:160:5682:92:3257:-151.22,0,-220.8	0/1:278:157,121:157:5594:121:4300:-234.928,0,-263.655	0/1:285:215,70:215:7653:70:2480:-78.2543,0,-402.074	0/1:603:351,252:351:12524:252:8982:-433.598,0,-589.16	0/1:429:294,135:294:10475:135:4799:-158.834,0,-517.363	0/1:490:292,197:292:10444:197:7003:-300.19,0,-455.98	0/1:747:513,231:513:18319:231:8201:-253.991,0,-824.523	0/1:27:22,5:22:773:5:180:-6.34131,0,-48.5425	0/1:399:183,215:183:6525:215:7670:-413.357,0,-330.524	0/1:165:103,62:103:3657:62:2209:-91.2193,0,-201.326	0/1:31:20,11:20:720:11:396:-26.6464,0,-31.9896	0/1:309:207,102:207:7394:102:3602:-165.003,0,-327.941	0/1:244:155,89:155:5552:89:3157:-144.295,0,-282.98	0/1:41:36,5:36:1288:5:172:-2.60204,0,-55.3288	0/1:54:37,17:37:1328:17:603:-28.2777,0,-63.9388	0/1:186:88,98:88:3111:98:3463:-193.224,0,-150.754	0/1:385:227,158:227:8059:158:5600:-276.425,0,-339.851	0/1:19:12,7:12:428:7:252:-12.921,0,-11.4033	0/1:468:287,181:287:10224:181:6423:-279.747,0,-445.995	0/1:713:485,228:485:17285:228:8126:-350.022,0,-756.894	0/1:266:116,149:116:4148:149:5308:-263.802,0,-175.276	0/1:321:209,112:209:7475:112:4012:-137.37,0,-374.416	0/1:762:539,222:539:19236:222:7919:-310.241,0,-885.549	0/1:254:90,164:90:3184:164:5880:-346.917,0,-120.351	0/1:106:55,51:55:1959:51:1832:-88.2241,0,-106.829	0/1:191:91,100:91:3252:100:3553:-195.735,0,-181.31	0/1:259:131,127:131:4645:127:4469:-255.07,0,-139.996	0/1:75:46,29:46:1621:29:1044:-50.3651,0,-87.4598	0/1:335:191,144:191:6704:144:5119:-259.32,0,-383.155	0/1:302:227,75:227:8098:75:2653:-85.572,0,-440.326	0/1:723:443,280:443:15730:280:9977:-506.764,0,-754.616	0/1:605:387,217:387:13833:217:7725:-351.238,0,-658.826	0/1:338:170,168:170:6073:168:5979:-310.296,0,-305.849	0/1:468:280,187:280:9951:187:6682:-297.501,0,-572.369	0/1:32:10,22:10:360:22:784:-39.8198,0,-15.6456	0/1:500:317,183:317:11324:183:6552:-258.243,0,-557.057	0/1:244:166,78:166:5851:78:2752:-84.8939,0,-341.25	0/1:768:477,291:477:16978:291:10408:-401.557,0,-766.991	0/1:362:163,197:163:5804:197:7054:-325.803,0,-191.4	0/1:143:54,89:54:1901:89:3141:-157.024,0,-61.0071	0/1:213:119,94:119:4232:94:3342:-177.23,0,-129.954	0/1:410:147,262:147:5225:262:9305:-454,0,-167.807	0/1:93:53,40:53:1846:40:1415:-68.2494,0,-86.3991	0/1:252:134,118:134:4779:118:4210:-184.898,0,-216.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chr12	25912311	.	CCCT	CCCG	104681	PASS	AB=0.498599;ABP=3.07116;AC=140;AF=0.752688;AN=186;AO=5052;CIGAR=3M1X;DP=6867;DPB=6867;DPRA=0;EPP=10973.3;EPPR=3826.98;GTI=2;LEN=1;MEANALT=1.41935;MQM=59.9842;MQMR=59.9983;NS=93;NUMALT=1;ODDS=0.122055;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=179607;QR=62201;RO=1765;RPL=5052;RPP=10973.3;RPPR=3826.98;RPR=0;RUN=1;SAF=0;SAP=10973.3;SAR=5052;SRF=0;SRP=3835.66;SRR=1765;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:18:0,18:0:0:18:644:-58.2902,-5.41854,0	1/1:63:0,62:0:0:62:2199:-197.893,-18.6639,0	0/1:35:9,26:9:312:26:914:-72.0386,0,-17.8782	0/1:116:74,42:74:2574:42:1508:-101.094,0,-196.987	0/1:49:27,21:27:965:21:752:-53.2161,0,-72.3773	0/1:50:23,25:23:798:25:900:-66.5117,0,-57.3276	1/1:95:1,94:1:36:94:3331:-296.412,-24.9996,0	0/1:63:37,26:37:1285:26:932:-65.234,0,-96.9834	0/1:104:55,49:55:1952:49:1744:-125.937,0,-144.648	1/1:91:0,90:0:0:90:3216:-289.303,-27.0927,0	0/1:43:16,27:16:548:27:964:-74.1325,0,-36.6977	1/1:84:0,83:0:0:83:2935:-264.026,-24.9855,0	0/1:70:29,40:29:1027:40:1428:-107.687,0,-71.6119	0/1:66:28,38:28:993:38:1355:-102.382,0,-69.8157	1/1:77:0,77:0:0:77:2722:-245.224,-23.1793,0	0/1:49:21,28:21:745:28:975:-73.3092,0,-52.6238	1/1:51:0,51:0:0:51:1823:-164.35,-15.3525,0	0/1:38:18,20:18:638:20:716:-53.1985,0,-46.3093	1/1:46:0,46:0:0:46:1644:-148.249,-13.8474,0	1/1:142:0,141:0:0:141:5021:-451.678,-42.4452,0	0/1:178:95,82:95:3386:82:2924:-209.792,0,-251.354	1/1:84:0,84:0:0:84:2975:-267.984,-25.2865,0	1/1:60:0,57:0:0:57:2027:-182.35,-17.1587,0	0/1:84:49,35:49:1739:35:1235:-86.1669,0,-131.507	1/1:16:0,16:0:0:16:568:-51.4519,-4.81648,0	0/1:318:176,141:176:6230:141:5000:-354.364,0,-465.014	0/1:92:50,42:50:1788:42:1502:-107.78,0,-133.508	1/1:47:0,47:0:0:47:1675:-151.036,-14.1484,0	0/1:134:74,59:74:2616:59:2108:-149.592,0,-195.291	0/1:50:20,30:20:683:30:1068:-81.3806,0,-46.7365	0/1:130:74,52:74:2581:52:1853:-128.764,0,-194.255	0/1:12:10,2:10:359:2:72:-3.22436,0,-29.0413	1/1:15:0,14:0:0:14:487:-43.8462,-4.21442,0	1/1:7:0,4:0:0:4:144:-12.9538,-1.20412,0	0/1:8:2,6:2:66:6:212:-17.0166,0,-3.85971	1/1:1:0,1:0:0:1:32:-3.19931,-0.30103,0	0/1:259:114,141:114:4016:141:5001:-373.14,0,-284.529	1/1:114:0,114:0:0:114:4063:-365.858,-34.3174,0	1/1:67:0,67:0:0:67:2382:-214.637,-20.169,0	.:.:.:.:.:.:.:.	1/1:55:1,54:1:36:54:1932:-170.558,-12.9584,0	1/1:33:0,32:0:0:32:1127:-101.465,-9.63296,0	1/1:84:0,84:0:0:84:2988:-269.153,-25.2865,0	1/1:69:0,69:0:0:69:2430:-218.949,-20.7711,0	1/1:89:0,88:0:0:88:3112:-279.959,-26.4906,0	0/1:115:46,64:46:1595:64:2281:-172.083,0,-110.368	1/1:31:0,31:0:0:31:1095:-98.8591,-9.33193,0	0/1:104:42,62:42:1484:62:2212:-168.038,0,-102.547	1/1:134:0,134:0:0:134:4789:-431.166,-40.338,0	0/1:107:39,68:39:1384:68:2432:-186.925,0,-92.647	1/1:155:0,155:0:0:155:5527:-497.547,-46.6597,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:51:33,17:33:1151:17:608:-39.6408,0,-88.483	0/1:57:26,31:26:928:31:1100:-82.1516,0,-66.6796	0/1:9:1,8:1:36:8:280:-22.83,0,-0.889005	0/1:107:50,54:50:1756:54:1924:-141.783,0,-126.667	1/1:20:0,20:0:0:20:720:-65.1288,-6.0206,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:23:0,23:0:0:23:816:-73.7617,-6.92369,0	1/1:53:0,53:0:0:53:1884:-169.839,-15.9546,0	0/1:119:58,61:58:2046:61:2158:-158.664,0,-148.588	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:171:1,168:1:36:168:5968:-533.674,-47.614,0	0/1:57:7,50:7:251:50:1784:-143.684,0,-5.77914	1/1:50:1,49:1:36:49:1737:-153.014,-11.4532,0	0/1:61:30,31:30:1043:31:1088:-79.8645,0,-75.8149	0/1:152:59,90:59:2075:90:3198:-242.866,0,-141.841	1/1:37:1,35:1:36:35:1252:-109.386,-7.59863,0	0/1:12:6,6:6:207:6:212:-15.8124,0,-15.3548	1/1:57:0,57:0:0:57:2039:-183.782,-17.1587,0	0/1:64:27,37:27:947:37:1308:-98.755,0,-66.2765	0/1:8:3,5:3:108:5:180:-14.1438,0,-7.66693	1/1:90:0,90:0:0:90:3212:-289.304,-27.0927,0	1/1:61:0,61:0:0:61:2163:-194.937,-18.3628,0	0/1:82:32,50:32:1109:50:1779:-135.708,0,-75.4291	1/1:83:0,83:0:0:83:2971:-267.618,-24.9855,0	1/1:67:0,67:0:0:67:2373:-213.827,-20.169,0	0/1:56:27,29:27:942:29:1036:-76.6962,0,-68.235	0/1:9:4,5:4:144:5:180:-13.8428,0,-10.6043	1/1:50:0,49:0:0:49:1734:-155.897,-14.7505,0	0/1:63:31,31:31:1089:31:1108:-81.0074,0,-79.295	1/1:160:0,159:0:0:159:5663:-509.43,-47.8638,0	1/1:158:0,158:0:0:158:5634:-507.182,-47.5627,0	0/1:58:38,20:38:1350:20:720:-47.669,0,-104.341	1/1:91:0,90:0:0:90:3181:-286.264,-27.0927,0	1/1:164:1,163:1:36:163:5760:-514.924,-45.7706,0	0/1:54:30,23:30:1058:23:802:-56.2026,0,-79.2353	1/1:73:0,73:0:0:73:2608:-234.968,-21.9752,0	0/1:86:44,42:44:1572:42:1466:-106.344,0,-115.883	0/1:23:15,8:15:536:8:288:-19.3437,0,-41.6514	0/1:100:61,38:61:2157:38:1351:-91.7279,0,-164.234	0/1:64:48,16:48:1680:16:558:-31.2806,0,-132.22	1/1:65:0,64:0:0:64:2276:-204.742,-19.2659,0	1/1:96:0,96:0:0:96:3404:-306.576,-28.8989,0
chr12	25912427	.	C	T	144350	PASS	AB=0.488498;ABP=8.75499;AC=139;AF=0.755435;AN=184;AO=6841;CIGAR=1X;DP=9412;DPB=9412;DPRA=0;EPP=14572.8;EPPR=5499.34;GTI=1;LEN=1;MEANALT=1;MQM=59.9952;MQMR=59.9953;NS=92;NUMALT=1;ODDS=0.129586;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=244797;QR=91948;RO=2571;RPL=6808;RPP=14572.8;RPPR=5490.73;RPR=33;RUN=1;SAF=0;SAP=14858.1;SAR=6841;SRF=1;SRP=5577.18;SRR=2570;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:87:0,87:0:0:87:3109:-280.035,-26.1896,0	1/1:61:0,61:0:0:61:2180:-196.466,-18.3628,0	0/1:159:88,71:88:3155:71:2552:-182.066,0,-236.31	0/1:206:124,82:124:4448:82:2924:-201.38,0,-338.478	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/1:38:23,15:23:828:15:540:-37.4974,0,-63.405	1/1:97:0,97:0:0:97:3488:-314.13,-29.1999,0	0/1:138:84,54:84:2970:54:1932:-132.614,0,-225.981	0/1:127:74,53:74:2641:53:1900:-133.047,0,-199.704	1/1:104:0,104:0:0:104:3734:-336.259,-31.3071,0	0/1:90:33,57:33:1173:57:2048:-157.499,0,-78.7829	1/1:110:0,110:0:0:110:3952:-355.87,-33.1133,0	0/1:87:44,43:44:1576:43:1540:-112.703,0,-115.942	0/1:69:35,34:35:1245:34:1224:-89.696,0,-91.5816	1/1:87:0,87:0:0:87:3113:-280.395,-26.1896,0	0/1:81:38,43:38:1364:43:1544:-114.87,0,-98.6773	1/1:35:0,35:0:0:35:1260:-113.705,-10.5361,0	0/1:38:17,21:17:612:21:756:-56.9281,0,-43.9743	1/1:42:0,42:0:0:42:1470:-132.587,-12.6433,0	1/1:230:0,230:0:0:230:8194:-737.469,-69.2369,0	0/1:251:130,121:130:4668:121:4334:-314.675,0,-344.721	1/1:122:0,122:0:0:122:4384:-394.732,-36.7257,0	1/1:144:0,144:0:0:144:5147:-463.368,-43.3483,0	0/1:43:9,34:9:324:34:1220:-97.1625,0,-16.5616	1/1:114:0,114:0:0:114:4076:-367.024,-34.3174,0	0/1:206:116,90:116:4164:90:3240:-229.808,0,-312.929	0/1:315:138,177:138:4911:177:6353:-477.032,0,-347.312	1/1:46:0,46:0:0:46:1618:-145.905,-13.8474,0	0/1:328:150,178:150:5353:178:6404:-477.706,0,-383.165	0/1:148:89,59:89:3204:59:2120:-146.516,0,-244.029	0/1:103:43,60:43:1540:60:2148:-162.58,0,-107.887	.:.:.:.:.:.:.:.	1/1:9:0,9:0:0:9:320:-29.1424,-2.70927,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:12:6,6:6:216:6:216:-16.1782,0,-16.1782	0/1:238:132,106:132:4729:106:3804:-270.912,0,-354.121	1/1:156:0,156:0:0:156:5505:-495.574,-46.9607,0	1/1:81:0,81:0:0:81:2908:-261.955,-24.3834,0	1/1:1:0,1:0:0:1:36:-3.59827,-0.30103,0	1/1:111:1,110:1:36:110:3953:-352.361,-29.8161,0	1/1:36:0,36:0:0:36:1296:-116.944,-10.8371,0	1/1:144:0,144:0:0:144:5165:-464.919,-43.3483,0	1/1:51:0,51:0:0:51:1821:-164.169,-15.3525,0	1/1:62:0,62:0:0:62:2232:-201.144,-18.6639,0	0/1:103:44,59:44:1557:59:2086:-157.001,0,-109.414	1/1:111:0,111:0:0:111:3977:-358.119,-33.4143,0	0/1:149:77,72:77:2764:72:2571:-186.785,0,-204.148	1/1:105:0,105:0:0:105:3765:-339.047,-31.6082,0	0/1:90:31,59:31:1116:59:2116:-163.616,0,-73.659	1/1:142:0,142:0:0:142:5093:-458.51,-42.7463,0	0/1:2:1,1:1:36:1:36:-2.99621,0,-2.99621	0/1:153:86,67:86:3092:67:2348:-165.516,0,-232.449	0/1:66:35,31:35:1222:31:1101:-79.5304,0,-90.4115	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	0/1:201:102,99:102:3619:99:3522:-256.681,0,-265.406	1/1:60:0,60:0:0:60:2160:-194.667,-18.0618,0	0/1:15:4,11:4:144:11:396:-31.4673,0,-8.79817	1/1:6:0,6:0:0:6:216:-19.7905,-1.80618,0	1/1:117:0,117:0:0:117:4182:-376.559,-35.2205,0	0/1:115:61,54:61:2196:54:1944:-140.618,0,-163.287	.:.:.:.:.:.:.:.	1/1:146:0,146:0:0:146:5222:-470.115,-43.9504,0	1/1:153:0,153:0:0:153:5487:-493.955,-46.0576,0	1/1:46:1,45:1:36:45:1601:-140.78,-10.2491,0	0/1:71:33,38:33:1180:38:1344:-99.8849,0,-85.1349	0/1:273:148,125:148:5294:125:4481:-321.275,0,-394.411	1/1:205:4,201:4:144:201:7207:-635.368,-48.3975,0	0/1:59:23,36:23:828:36:1281:-97.8305,0,-57.0833	1/1:68:0,68:0:0:68:2433:-219.224,-20.47,0	0/1:66:35,31:35:1256:31:1104:-79.8027,0,-93.4773	0/1:31:18,13:18:629:13:468:-33.1277,0,-47.6018	1/1:139:1,138:1:32:138:4948:-442.268,-38.6439,0	1/1:59:0,59:0:0:59:2116:-190.709,-17.7608,0	0/1:235:132,103:132:4725:103:3659:-258.769,0,-354.665	1/1:124:0,124:0:0:124:4445:-400.218,-37.3277,0	1/1:34:0,34:0:0:34:1224:-110.467,-10.235,0	0/1:86:40,46:40:1427:46:1644:-122.359,0,-102.838	0/1:10:6,4:6:216:4:144:-10.3033,0,-16.7802	1/1:101:0,101:0:0:101:3583:-322.674,-30.404,0	0/1:96:39,57:39:1400:57:2018:-152.99,0,-97.4003	1/1:183:1,182:1:36:182:6476:-579.325,-51.4902,0	1/1:85:1,84:1:36:84:3016:-268.072,-21.9893,0	0/1:90:44,46:44:1584:46:1637:-120.524,0,-115.759	1/1:44:0,44:0:0:44:1584:-142.852,-13.2453,0	1/1:168:2,166:2:72:166:5935:-527.418,-43.7363,0	0/1:27:8,19:8:288:19:684:-53.7625,0,-18.1396	1/1:83:0,83:0:0:83:2988:-269.151,-24.9855,0	0/1:90:47,43:47:1684:43:1548:-112.52,0,-124.754	0/1:40:18,22:18:648:22:792:-59.5645,0,-46.6107	0/1:134:75,59:75:2673:59:2124:-151.09,0,-200.476	0/1:80:55,25:55:1957:25:900:-57.2386,0,-152.321	1/1:153:1,152:1:36:152:5459:-487.838,-42.4593,0	1/1:141:2,139:2:72:139:4964:-440.071,-35.6085,0
chr12	25912833	.	T	C	31293.2	PASS	AB=0.45937;ABP=63.5342;AC=48;AF=0.255319;AN=188;AO=1945;CIGAR=1X;DP=8232;DPB=8232;DPRA=1.10548;EPP=4217.84;EPPR=13557.5;GTI=2;LEN=1;MEANALT=1.01887;MQM=59.9943;MQMR=59.9994;NS=94;NUMALT=1;ODDS=3.25577;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=69121;QR=225100;RO=6286;RPL=1;RPP=4217.84;RPPR=13557.5;RPR=1944;RUN=1;SAF=1945;SAP=4226.52;SAR=0;SRF=6286;SRP=13652.9;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:65:65,0:65:2328:0:0:0,-19.5669,-209.78	0/0:65:63,2:63:2268:2:72:0,-12.7302,-197.545	0/1:146:85,61:85:3025:61:2171:-151.706,0,-228.529	0/1:130:76,54:76:2727:54:1936:-135.382,0,-206.538	0/1:76:41,35:41:1464:35:1235:-88.5752,0,-109.178	0/1:29:20,9:20:707:9:320:-20.4125,0,-55.2247	0/0:36:36,0:36:1296:0:0:0,-10.8371,-116.944	0/1:186:98,88:98:3516:88:3123:-225.306,0,-260.658	0/1:116:59,57:59:2111:57:2036:-148.593,0,-155.339	0/0:87:87,0:87:3124:0:0:0,-26.1896,-281.386	0/1:81:46,35:46:1652:35:1230:-86.619,0,-124.585	0/0:128:128,0:128:4588:0:0:0,-38.5318,-413.084	0/1:95:50,45:50:1800:45:1608:-116.412,0,-133.684	0/1:72:38,34:38:1351:34:1199:-86.5406,0,-100.215	0/0:86:86,0:86:3092:0:0:0,-25.8886,-278.507	0/1:58:35,23:35:1256:23:824:-57.0236,0,-95.8855	0/0:39:39,0:39:1392:0:0:0,-11.7402,-125.579	0/1:42:27,15:27:964:15:531:-35.4786,0,-74.4336	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:121:121,0:121:4332:0:0:0,-36.4246,-390.056	0/1:151:75,76:75:2673:76:2699:-197.697,0,-195.359	0/0:102:102,0:102:3643:0:0:0,-30.7051,-328.075	0/0:147:147,0:147:5254:0:0:0,-44.2514,-472.996	0/1:43:16,27:16:576:27:968:-74.4931,0,-39.2307	0/0:94:94,0:94:3354:0:0:0,-28.2968,-302.076	0/1:257:131,126:131:4696:126:4472:-325.284,0,-345.435	0/1:199:122,77:122:4384:77:2739:-186.848,0,-334.827	0/0:45:45,0:45:1620:0:0:0,-13.5463,-146.09	0/1:203:109,93:109:3892:93:3311:-237.042,0,-289.305	0/1:85:40,45:40:1432:45:1612:-119.783,0,-103.59	0/1:80:47,33:47:1688:33:1168:-81.3448,0,-128.125	0/1:6:5,1:5:176:1:36:-1.79209,0,-14.3788	0/0:28:28,0:28:1004:0:0:0,-8.42884,-90.6759	0/0:8:8,0:8:288:0:0:0,-2.40824,-26.2674	0/1:5:3,2:3:108:2:72:-5.33157,0,-8.57002	0/1:25:19,6:19:676:6:216:-12.2648,0,-53.6422	0/1:207:107,100:107:3852:100:3528:-255.418,0,-284.56	0/0:131:131,0:131:4708:0:0:0,-39.4349,-423.878	0/0:65:65,0:65:2336:0:0:0,-19.5669,-210.499	0/1:6:5,1:5:180:1:36:-1.79209,0,-14.7459	0/0:34:34,0:34:1206:0:0:0,-10.235,-108.844	0/0:53:53,0:53:1904:0:0:0,-15.9546,-171.638	0/0:172:172,0:172:6140:0:0:0,-51.7772,-552.699	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.859	0/0:73:73,0:73:2608:0:0:0,-21.9752,-234.968	0/1:109:69,40:69:2480:40:1415:-94.8343,0,-190.641	0/0:162:162,0:162:5804:0:0:0,-48.7669,-522.473	0/1:148:87,61:87:3109:61:2175:-151.463,0,-235.483	0/0:60:59,1:59:2100:1:36:0,-14.4635,-185.669	0/1:130:65,65:65:2332:65:2316:-169.567,0,-171.006	0/0:46:46,0:46:1652:0:0:0,-13.8474,-148.968	0/1:12:7,5:7:252:5:180:-12.9397,0,-19.4166	0/1:165:79,86:79:2840:86:3052:-225.241,0,-206.168	0/1:35:17,18:17:608:18:639:-47.3022,0,-44.516	0/1:13:9,4:9:324:4:144:-9.40023,0,-25.5925	0/1:76:44,32:44:1580:32:1144:-80.3912,0,-119.613	0/0:26:26,0:26:923:0:0:0,-7.82678,-83.3868	0/1:28:21,7:21:756:7:252:-14.6001,0,-59.9384	0/0:18:18,0:18:648:0:0:0,-5.41854,-58.6519	0/0:105:105,0:105:3760:0:0:0,-31.6081,-338.6	0/1:106:61,45:61:2184:45:1596:-112.021,0,-164.917	0/0:9:9,0:9:324:0:0:0,-2.70927,-29.5059	0/0:187:187,0:187:6703:0:0:0,-56.2926,-603.344	0/0:184:184,0:184:6587:0:0:0,-55.3895,-592.91	0/0:20:20,0:20:720:0:0:0,-6.0206,-65.1288	0/1:68:34,34:34:1212:34:1224:-89.997,0,-88.9163	0/1:86:41,45:41:1472:45:1605:-118.852,0,-106.888	0/0:133:132,1:132:4722:1:32:0,-36.8377,-421.939	0/1:67:33,34:33:1188:34:1211:-89.1265,0,-87.0596	0/0:35:35,0:35:1244:0:0:0,-10.536,-112.265	0/1:49:24,25:24:860:25:875:-64.3157,0,-62.9714	0/1:17:7,10:7:248:10:343:-26.0831,0,-17.5467	0/0:59:59,0:59:2101:0:0:0,-17.7608,-189.358	0/0:79:79,0:79:2816:0:0:0,-23.7814,-253.68	0/1:120:64,56:64:2296:56:1973:-141.719,0,-170.777	0/0:81:81,0:81:2903:0:0:0,-24.3834,-261.505	0/0:171:171,0:171:6082:0:0:0,-51.4761,-547.486	0/1:139:84,55:84:3012:55:1963:-135.101,0,-229.468	0/1:19:7,12:7:252:12:426:-32.9578,0,-17.3094	0/0:88:88,0:88:3164:0:0:0,-26.4906,-284.984	0/1:92:47,45:47:1692:45:1595:-116.145,0,-124.872	0/0:217:216,1:216:7734:1:36:0,-61.7252,-692.493	0/0:67:67,0:67:2396:0:0:0,-20.169,-215.897	0/1:77:38,39:38:1368:39:1387:-101.949,0,-100.242	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/0:147:146,1:146:5236:1:27:0,-41.5516,-468.677	0/1:33:19,14:19:684:14:504:-35.7641,0,-51.9563	0/0:63:63,0:63:2268:0:0:0,-18.9649,-204.382	0/1:63:35,28:35:1256:28:1000:-71.3505,0,-94.3804	0/1:61:34,27:34:1220:27:951:-67.5415,0,-91.744	0/1:119:72,47:72:2575:47:1675:-115.196,0,-196.176	0/1:91:29,62:29:1040:62:2203:-171.141,0,-66.5206	0/0:179:179,0:179:6346:0:0:0,-53.8844,-571.232	0/0:105:105,0:105:3772:0:0:0,-31.6081,-339.678
chr12	25913891	.	C	T	26894	PASS	AB=0.498282;ABP=3.09238;AC=47;AF=0.25;AN=188;AO=1603;CIGAR=1X;DP=6382;DPB=6382;DPRA=1.07382;EPP=3475.2;EPPR=10378.3;GTI=2;LEN=1;MEANALT=1;MQM=59.9133;MQMR=59.9849;NS=94;NUMALT=1;ODDS=1.21287;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=57321;QR=170566;RO=4778;RPL=0;RPP=3483.88;RPPR=10378.3;RPR=1603;RUN=1;SAF=1602;SAP=3475.2;SAR=1;SRF=4778;SRP=10378.3;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:36:36,0:36:1292:0:0:0,-10.8371,-116.584	0/0:115:115,0:115:4116:0:0:0,-34.6184,-370.625	0/1:107:44,63:44:1571:63:2256:-171.093,0,-109.471	0/1:150:59,91:59:2108:91:3256:-248.107,0,-144.835	0/1:35:12,23:12:428:23:824:-63.9473,0,-28.3228	0/1:44:15,29:15:536:29:1040:-80.6657,0,-35.3295	0/0:52:52,0:52:1856:0:0:0,-15.6536,-167.32	0/1:111:63,48:63:2256:48:1724:-122.031,0,-169.889	0/1:54:28,26:28:1004:26:932:-67.9432,0,-74.4202	0/0:23:23,0:23:824:0:0:0,-6.92369,-74.4833	0/1:89:51,38:51:1828:38:1360:-95.9089,0,-138.009	0/0:83:83,0:83:2971:0:0:0,-24.9855,-267.622	0/1:73:40,33:40:1427:33:1184:-84.8931,0,-106.752	0/1:94:54,40:54:1924:40:1427:-100.427,0,-145.14	0/0:70:70,0:70:2507:0:0:0,-21.0721,-225.882	0/1:54:31,23:31:1112:23:820:-57.8669,0,-84.1357	0/0:84:84,0:84:2991:0:0:0,-25.2865,-269.422	0/1:68:37,31:37:1324:31:1112:-79.9213,0,-98.9921	0/0:71:70,0:70:2503:0:0:0,-21.0721,-225.31	0/0:90:90,0:90:3193:0:0:0,-27.0927,-287.594	0/1:111:46,65:46:1639:65:2314:-175.105,0,-114.382	0/0:37:37,0:37:1320:0:0:0,-11.1381,-119.102	0/0:41:41,0:41:1464:0:0:0,-12.3422,-132.038	0/1:63:26,37:26:932:37:1315:-99.6861,0,-65.234	0/0:44:44,0:44:1568:0:0:0,-13.2453,-141.412	0/1:141:69,72:69:2480:72:2584:-190.364,0,-181.008	0/1:90:45,45:45:1584:45:1612:-118.277,0,-115.755	0/0:50:50,0:50:1779:0:0:0,-15.0515,-160.392	0/1:99:54,45:54:1928:45:1606:-115.024,0,-143.995	0/1:56:25,31:25:896:31:1104:-82.813,0,-64.1027	0/1:59:40,19:40:1428:19:665:-42.412,0,-111.057	0/1:7:6,1:6:207:1:36:-1.49107,0,-16.8597	0/0:11:11,0:11:396:0:0:0,-3.31133,-35.9827	0/0:7:7,0:7:244:0:0:0,-2.10721,-22.2994	0/1:4:2,2:2:68:2:72:-5.6326,0,-5.25359	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:186:97,89:97:3476:89:3187:-231.061,0,-257.056	0/0:72:72,0:72:2568:0:0:0,-21.6742,-231.37	0/0:94:94,0:94:3376:0:0:0,-28.2968,-304.055	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	0/0:39:39,0:39:1388:0:0:0,-11.7402,-125.219	0/0:47:47,0:47:1692:0:0:0,-14.1484,-152.567	0/0:79:79,0:79:2817:0:0:0,-23.7814,-253.768	0/0:76:76,0:76:2732:0:0:0,-22.8783,-246.122	0/0:68:68,0:68:2427:0:0:0,-20.47,-218.685	0/1:50:19,31:19:676:31:1108:-84.9795,0,-46.1165	0/0:92:92,0:92:3304:0:0:0,-27.6948,-297.578	0/1:94:48,46:48:1724:46:1623:-118.029,0,-127.149	0/0:101:101,0:101:3607:0:0:0,-30.404,-324.836	0/1:62:35,27:35:1260:27:956:-67.654,0,-95.0416	0/0:116:116,0:116:4125:0:0:0,-34.9195,-371.435	0/1:9:2,7:2:72:7:237:-18.9498,0,-4.12745	0/1:68:41,27:41:1472:27:972:-67.3279,0,-112.306	0/1:11:9,2:9:324:2:72:-3.52539,0,-26.1945	0/1:6:3,3:3:104:3:108:-8.26899,0,-7.89663	0/1:55:19,36:19:676:36:1283:-99.216,0,-44.6113	0/0:24:24,0:24:856:0:0:0,-7.22472,-77.3611	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:16:16,0:16:572:0:0:0,-4.81648,-51.8134	0/0:77:77,0:77:2730:0:0:0,-23.1793,-245.943	0/1:99:49,50:49:1755:50:1800:-132.48,0,-128.431	0/0:1:1,0:1:36:0:0:0,-0.30103,-3.59827	0/0:136:136,0:136:4839:0:0:0,-40.9401,-435.664	0/1:42:37,5:37:1320:5:172:-3.17471,0,-106.455	0/0:44:42,2:42:1508:2:72:0,-6.4086,-129.178	0/1:39:32,7:32:1135:7:248:-10.924,0,-90.7179	0/1:80:27,53:27:954:53:1896:-146.806,0,-62.0916	0/0:55:55,0:55:1972:0:0:0,-16.5566,-177.755	0/1:48:26,22:26:924:22:788:-56.7954,0,-69.0282	0/0:49:49,0:49:1755:0:0:0,-14.7505,-158.233	0/1:76:34,42:34:1212:42:1508:-113.136,0,-86.508	0/1:14:9,5:9:324:5:180:-12.3376,0,-25.2914	0/0:72:72,0:72:2580:0:0:0,-21.6742,-232.449	0/0:77:77,0:77:2744:0:0:0,-23.1793,-247.203	0/1:124:63,61:63:2238:61:2188:-159.788,0,-164.355	0/0:136:136,0:136:4868:0:0:0,-40.9401,-438.273	0/0:59:59,0:59:2095:0:0:0,-17.7608,-188.819	0/1:110:55,55:55:1959:55:1972:-144.642,0,-143.471	0/0:3:3,0:3:99:0:0:0,-0.90309,-9.23658	0/0:92:92,0:92:3300:0:0:0,-27.6948,-297.218	0/1:53:30,23:30:1063:23:820:-58.156,0,-80.0262	0/0:137:137,0:137:4876:0:0:0,-41.2411,-438.993	0/0:102:102,0:102:3643:0:0:0,-30.7051,-326.713	0/1:62:27,35:27:968:35:1256:-94.6814,0,-68.7735	0/0:99:98,1:98:3480:1:36:0,-26.2037,-309.813	0/0:129:129,0:129:4598:0:0:0,-38.8329,-413.985	0/1:50:27,23:27:947:23:824:-59.4318,0,-70.4923	0/0:71:71,0:71:2548:0:0:0,-21.3731,-229.57	0/1:82:36,46:36:1273:46:1648:-123.913,0,-90.1831	0/1:52:28,24:28:991:24:864:-62.429,0,-73.85	0/1:147:85,62:85:3036:62:2232:-156.892,0,-229.219	0/1:73:21,52:21:729:52:1848:-144.623,0,-43.9533	0/0:92:91,1:91:3252:1:36:0,-24.0965,-289.303	0/0:101:101,0:101:3611:0:0:0,-30.404,-325.196
chr12	25945631	.	A	T	122435	PASS	AB=0.546982;ABP=84.0147;AC=139;AF=0.747312;AN=186;AO=5935;CIGAR=1X;DP=7855;DPB=7855;DPRA=0;EPP=12890.7;EPPR=4161.38;GTI=1;LEN=1;MEANALT=1.05376;MQM=59.9922;MQMR=59.988;NS=93;NUMALT=1;ODDS=2.89866;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=210348;QR=68180;RO=1915;RPL=5935;RPP=12890.7;RPPR=4161.38;RPR=0;RUN=1;SAF=5935;SAP=12890.7;SAR=0;SRF=1915;SRP=4161.38;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:29:0,29:0:0:29:1024:-92.4726,-8.72987,0	1/1:91:0,91:0:0:91:3226:-290.563,-27.3937,0	0/1:210:92,117:92:3274:117:4140:-309.508,0,-231.605	0/1:246:103,143:103:3665:143:5070:-382.394,0,-256	0/1:56:25,31:25:891:31:1100:-82.4526,0,-63.6511	0/1:41:24,17:24:860:17:608:-42.7098,0,-65.3796	1/1:99:0,99:0:0:99:3488:-314.101,-29.802,0	0/1:88:27,61:27:964:61:2179:-169.885,0,-60.5862	0/1:79:42,37:42:1491:37:1288:-92.4367,0,-110.702	1/1:55:0,55:0:0:55:1957:-176.404,-16.5567,0	0/1:36:8,28:8:279:28:995:-79.0269,0,-14.6105	1/1:77:0,76:0:0:76:2688:-241.844,-22.8783,0	0/1:72:28,44:28:1000:44:1559:-118.927,0,-68.6412	0/1:41:17,24:17:612:24:843:-63.8458,0,-43.0712	1/1:73:0,73:0:0:73:2607:-234.878,-21.9752,0	0/1:52:28,24:28:999:24:840:-60.2619,0,-74.5709	1/1:35:0,35:0:0:35:1239:-111.814,-10.5361,0	0/1:28:12,16:12:423:16:563:-42.5703,0,-29.9762	1/1:24:0,24:0:0:24:860:-77.7218,-7.22472,0	1/1:229:0,229:0:0:229:8137:-732.35,-68.9359,0	0/1:198:90,108:90:3210:108:3846:-286.733,0,-229.518	1/1:99:0,99:0:0:99:3514:-316.469,-29.802,0	1/1:137:1,136:1:32:136:4841:-432.646,-38.0418,0	0/1:56:33,23:33:1175:23:807:-56.0915,0,-89.1993	1/1:35:0,35:0:0:35:1231:-111.093,-10.5361,0	0/1:207:122,85:122:4358:85:3023:-209.987,0,-330.081	0/1:202:73,129:73:2585:129:4574:-351.022,0,-172.09	1/1:27:0,27:0:0:27:968:-87.4374,-8.12781,0	0/1:189:88,101:88:3122:101:3580:-265.514,0,-224.313	0/1:172:76,96:76:2716:96:3428:-256.957,0,-192.907	0/1:195:66,128:66:2343:128:4510:-347.311,0,-152.37	0/1:3:2,1:2:72:1:36:-2.69518,0,-5.93363	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	1/1:2:0,2:0:0:2:57:-5.41331,-0.60206,0	0/1:16:11,5:11:396:5:180:-11.7356,0,-31.1663	0/1:16:7,9:7:252:9:307:-23.1438,0,-18.2125	0/1:180:92,88:92:3265:88:3127:-227.472,0,-239.885	1/1:111:0,111:0:0:111:3967:-357.221,-33.4143,0	1/1:48:0,48:0:0:48:1712:-154.366,-14.4494,0	0/1:6:1,5:1:32:5:180:-14.7459,0,-1.39313	1/1:222:1,220:1:36:220:7787:-697.311,-63.2443,0	1/1:41:0,41:0:0:41:1468:-132.416,-12.3422,0	1/1:87:0,87:0:0:87:3026:-272.57,-26.1896,0	1/1:60:0,60:0:0:60:2147:-193.497,-18.0618,0	1/1:42:0,42:0:0:42:1491:-134.484,-12.6433,0	0/1:55:32,23:32:1143:23:795:-55.3071,0,-86.622	1/1:84:0,84:0:0:84:2979:-268.342,-25.2865,0	0/1:118:74,44:74:2615:44:1534:-102.826,0,-200.077	1/1:34:0,34:0:0:34:1194:-107.764,-10.235,0	0/1:156:75,81:75:2662:81:2880:-212.475,0,-192.865	1/1:88:0,88:0:0:88:3098:-279.047,-26.4906,0	0/1:7:3,4:3:108:4:144:-11.2064,0,-7.96796	0/1:78:33,45:33:1176:45:1581:-119.098,0,-82.6674	0/1:115:46,69:46:1628:69:2429:-184.244,0,-112.19	0/1:10:4,6:4:140:6:212:-16.4145,0,-9.93428	0/1:150:73,77:73:2616:77:2724:-200.248,0,-190.533	1/1:31:0,31:0:0:31:1116:-100.752,-9.33193,0	1/1:4:0,4:0:0:4:144:-13.3136,-1.20412,0	1/1:8:0,8:0:0:8:288:-26.2674,-2.40824,0	1/1:71:0,71:0:0:71:2527:-227.682,-21.3731,0	0/1:78:35,43:35:1243:43:1528:-114.333,0,-88.6935	.:.:.:.:.:.:.:.	1/1:152:0,152:0:0:152:5369:-483.344,-45.7566,0	1/1:141:0,141:0:0:141:5027:-452.576,-42.4452,0	1/1:58:0,58:0:0:58:2058:-185.487,-17.4597,0	0/1:102:37,65:37:1316:65:2302:-176.735,0,-88.0367	0/1:179:87,92:87:3099:92:3234:-237.396,0,-225.254	1/1:175:0,175:0:0:175:6210:-559,-52.6803,0	0/1:24:15,9:15:532:9:324:-22.2811,0,-40.9884	1/1:72:0,72:0:0:72:2528:-227.769,-21.6742,0	0/1:36:15,21:15:527:21:745:-56.5376,0,-36.9231	0/1:9:3,6:3:104:6:216:-17.0812,0,-6.99354	1/1:102:0,102:0:0:102:3591:-323.399,-30.7051,0	1/1:11:0,11:0:0:11:392:-35.6201,-3.31133,0	0/1:206:75,131:75:2688:131:4655:-357.1,0,-179.963	1/1:146:0,146:0:0:146:5203:-468.408,-43.9504,0	1/1:101:1,100:1:36:100:3580:-318.804,-26.8058,0	0/1:133:66,66:66:2347:66:2343:-171.034,0,-171.393	0/1:4:2,2:2:72:2:72:-5.6326,0,-5.6326	1/1:92:0,92:0:0:92:3265:-294.072,-27.6948,0	0/1:79:34,45:34:1216:45:1567:-117.536,0,-85.9652	1/1:106:0,106:0:0:106:3769:-339.408,-31.9092,0	1/1:51:0,51:0:0:51:1783:-160.749,-15.3525,0	0/1:44:14,30:14:496:30:1072:-83.5471,0,-31.7289	1/1:42:0,42:0:0:42:1474:-132.953,-12.6433,0	1/1:132:0,132:0:0:132:4700:-423.161,-39.736,0	0/1:24:13,11:13:464:11:387:-27.9412,0,-34.8728	1/1:68:1,67:1:36:67:2380:-210.857,-16.8718,0	0/1:63:23,40:23:824:40:1409:-108.14,0,-55.5184	0/1:25:8,17:8:288:17:612:-47.8877,0,-18.7417	0/1:81:37,44:37:1320:44:1557:-116.036,0,-94.7185	0/1:60:40,20:40:1432:20:716:-46.7059,0,-111.116	1/1:151:0,151:0:0:151:5332:-480.017,-45.4555,0	1/1:76:0,76:0:0:76:2693:-242.614,-22.8783,0
chr12	25945693	.	G	T	21326.8	PASS	AB=0.394853;ABP=350.061;AC=44;AF=0.236559;AN=186;AO=1433;CIGAR=1X;DP=7742;DPB=7742;DPRA=1.13166;EPP=3114.73;EPPR=13700.7;GTI=2;LEN=1;MEANALT=1.02;MQM=59.9937;MQMR=59.9965;NS=93;NUMALT=1;ODDS=0.232038;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=51122;QR=225915;RO=6308;RPL=1433;RPP=3114.73;RPPR=13700.7;RPR=0;RUN=1;SAF=0;SAP=3114.73;SAR=1433;SRF=0;SRP=13700.7;SRR=6308;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	0/0:17:17,0:17:604:0:0:0,-5.11751,-54.6906	0/0:118:118,0:118:4224:0:0:0,-35.5215,-380.34	0/1:52:35,17:35:1252:17:608:-39.3985,0,-97.3315	0/1:123:74,49:74:2649:49:1760:-121.657,0,-201.628	0/1:79:62,17:62:2213:17:604:-30.9092,0,-175.652	0/1:73:52,21:52:1860:21:741:-45.0364,0,-145.704	0/0:102:102,0:102:3664:0:0:0,-30.7051,-329.963	0/1:181:113,68:113:4014:68:2429:-164.377,0,-306.962	0/1:52:34,18:34:1216:18:644:-42.637,0,-94.093	0/0:132:132,0:132:4728:0:0:0,-39.736,-425.679	0/1:54:35,19:35:1260:19:684:-45.6347,0,-97.4499	0/0:56:56,0:56:2016:0:0:0,-16.8577,-181.713	0/1:63:32,31:32:1152:31:1116:-81.7868,0,-85.0253	0/1:73:42,31:42:1504:31:1112:-78.4162,0,-113.679	0/0:64:64,0:64:2300:0:0:0,-19.2659,-207.261	0/1:40:25,15:25:900:15:540:-36.8953,0,-69.2798	0/0:62:62,0:62:2220:0:0:0,-18.6639,-200.064	0/1:52:25,27:25:900:27:968:-71.7838,0,-65.6675	0/0:19:19,0:19:684:0:0:0,-5.71957,-61.8903	0/0:140:140,0:140:5008:0:0:0,-42.1442,-450.868	0/1:116:64,52:64:2281:52:1860:-132.76,0,-170.631	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:104:104,0:104:3717:0:0:0,-31.3071,-334.73	0/1:61:38,23:38:1349:23:824:-56.1205,0,-103.345	0/0:39:39,0:39:1400:0:0:0,-11.7402,-126.299	0/1:234:146,88:146:5232:88:3156:-213.824,0,-400.576	0/1:103:65,38:65:2328:38:1341:-89.982,0,-178.774	0/0:40:40,0:40:1440:0:0:0,-12.0412,-129.898	0/1:126:74,52:74:2626:52:1823:-126.415,0,-198.655	0/1:109:65,44:65:2336:44:1550:-106.967,0,-177.687	0/1:178:107,71:107:3819:71:2507:-172.295,0,-290.324	0/1:6:3,3:3:108:3:108:-8.26899,0,-8.26899	0/0:5:5,0:5:180:0:0:0,-1.50515,-16.5521	0/0:3:3,0:3:108:0:0:0,-0.90309,-10.0752	0/1:3:2,1:2:72:1:32:-2.29622,0,-5.93363	0/1:3:1,2:1:36:2:72:-5.93363,0,-2.69518	0/1:209:112,97:112:4024:97:3473:-249.864,0,-299.432	0/0:187:186,1:186:6664:1:36:0,-52.6943,-596.239	0/0:61:61,0:61:2173:0:0:0,-18.3628,-195.835	.:.:.:.:.:.:.:.	0/0:149:149,0:149:5340:0:0:0,-44.8535,-480.732	0/0:24:24,0:24:860:0:0:0,-7.22472,-77.7218	0/0:55:55,0:55:1968:0:0:0,-16.5566,-177.395	0/0:102:102,0:102:3656:0:0:0,-30.7051,-329.244	0/0:67:67,0:67:2392:0:0:0,-20.169,-215.537	0/1:71:47,24:47:1688:24:860:-56.3487,0,-130.834	0/0:150:150,0:150:5368:0:0:0,-45.1545,-483.252	0/1:140:98,42:98:3528:42:1508:-93.8704,0,-275.583	0/0:122:122,0:122:4384:0:0:0,-36.7257,-394.732	0/1:144:88,56:88:3160:56:2001:-137.013,0,-241.276	0/0:55:55,0:55:1976:0:0:0,-16.5566,-178.115	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/1:55:34,21:34:1205:21:756:-51.8106,0,-92.1972	0/1:18:14,4:14:489:4:144:-7.89508,0,-38.9204	0/0:14:13,1:13:468:1:21:0,-2.11447,-40.3597	0/1:105:51,53:51:1832:53:1885:-138.26,0,-133.494	0/0:50:50,0:50:1792:0:0:0,-15.0515,-161.562	0/0:6:6,0:6:216:0:0:0,-1.80618,-19.7905	0/0:22:22,0:22:788:0:0:0,-6.62266,-71.2448	0/0:58:58,0:58:2088:0:0:0,-17.4597,-188.19	0/1:91:50,41:50:1792:41:1457:-104.03,0,-134.169	0/0:4:4,0:4:144:0:0:0,-1.20412,-13.3136	0/0:271:270,1:270:9673:1:36:0,-77.9809,-866.92	0/0:189:188,1:188:6733:1:36:0,-53.2964,-602.444	0/0:66:66,0:66:2361:0:0:0,-19.868,-212.747	0/1:56:42,14:42:1488:14:500:-28.4785,0,-117.357	0/1:132:84,48:84:3001:48:1701:-113.638,0,-230.584	0/0:53:52,1:52:1860:1:36:0,-12.3563,-164.081	0/1:23:14,9:14:491:9:324:-22.5822,0,-37.5974	0/0:82:82,0:82:2948:0:0:0,-24.6845,-265.553	0/1:93:55,38:55:1976:38:1356:-94.3447,0,-150.119	0/1:12:5,7:5:180:7:252:-19.4166,0,-12.9397	0/0:156:156,0:156:5596:0:0:0,-46.9607,-503.761	0/0:109:109,0:109:3908:0:0:0,-32.8123,-351.913	0/1:132:85,47:85:3040:47:1684:-112.111,0,-234.094	0/0:129:129,0:129:4616:0:0:0,-38.8329,-415.604	0/0:65:65,0:65:2340:0:0:0,-19.5669,-210.669	0/1:137:65,72:65:2324:72:2592:-192.287,0,-168.179	0/1:13:9,4:9:320:4:144:-9.40023,0,-25.229	0/0:71:70,1:70:2516:1:36:0,-17.7749,-223.093	0/1:68:44,24:44:1580:24:864:-57.6125,0,-122.022	0/0:166:166,0:166:5933:0:0:0,-49.971,-534.078	0/0:123:123,0:123:4411:0:0:0,-37.0267,-397.161	0/1:68:52,16:52:1868:16:576:-31.7049,0,-147.929	0/0:94:94,0:94:3363:0:0:0,-28.2968,-302.886	0/0:154:154,0:154:5521:0:0:0,-46.3586,-497.013	0/1:44:30,14:30:1076:14:504:-32.4528,0,-83.9075	0/0:73:73,0:73:2616:0:0:0,-21.9752,-235.688	0/1:43:25,18:25:900:18:618:-42.994,0,-68.3767	0/1:32:24,8:24:864:8:284:-16.2704,0,-68.4496	0/1:79:37,42:37:1332:42:1508:-112.233,0,-96.401	0/1:68:27,41:27:972:41:1451:-110.414,0,-67.3279	0/0:138:138,0:138:4929:0:0:0,-41.5421,-443.76	0/0:101:101,0:101:3600:0:0:0,-30.404,-324.205
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chr12	26020226	.	G	T	165483	PASS	AB=0.495701;ABP=3.71971;AC=141;AF=0.75;AN=188;AO=6282;CIGAR=1X;DP=8523;DPB=8523;DPRA=0;EPP=138.468;EPPR=31.0512;GTI=0;LEN=1;MEANALT=1.03191;MQM=50.1517;MQMR=50.5424;NS=94;NUMALT=1;ODDS=2.501;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=224313;QR=79206;RO=2238;RPL=6275;RPP=13583.5;RPPR=4845.41;RPR=7;RUN=1;SAF=2821;SAP=144.595;SAR=3461;SRF=1032;SRP=32.3863;SRR=1206;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:42:0,42:0:0:42:1504:-132.477,-12.6433,0	1/1:88:0,88:0:0:88:3156:-280.146,-26.4906,0	0/1:220:114,106:114:4066:106:3797:-269.06,0,-291.976	0/1:148:79,69:79:2802:69:2449:-172.058,0,-202.311	0/1:56:24,32:24:843:32:1126:-82.9021,0,-58.7016	0/1:61:28,33:28:987:33:1162:-85.3291,0,-69.7457	1/1:115:0,115:0:0:115:4103:-361.891,-34.6185,0	0/1:143:68,75:68:2403:75:2691:-194.953,0,-171.508	0/1:107:64,43:64:2263:43:1527:-103.186,0,-167.907	1/1:79:0,79:0:0:79:2832:-250.875,-23.7814,0	0/1:97:49,48:49:1756:48:1718:-123.003,0,-128.189	1/1:155:0,155:0:0:155:5538:-491.472,-46.6597,0	0/1:107:57,50:57:2016:50:1787:-126.565,0,-147.9	0/1:119:50,69:50:1754:69:2437:-182.07,0,-121.11	1/1:117:0,117:0:0:117:4188:-370.591,-35.2205,0	0/1:72:35,37:35:1252:37:1306:-95.0498,0,-89.9973	1/1:92:0,92:0:0:92:3270:-292.726,-27.6948,0	0/1:60:37,23:37:1290:23:828:-56.2932,0,-97.1961	1/1:56:0,56:0:0:56:2011:-177.786,-16.8577,0	1/1:169:0,169:0:0:169:6017:-530.923,-50.8741,0	0/1:155:77,78:77:2721:78:2780:-199.728,0,-195.188	1/1:51:0,51:0:0:51:1813:-160.793,-15.3525,0	1/1:56:0,56:0:0:56:1997:-173.907,-16.8577,0	0/1:82:44,38:44:1537:38:1353:-93.6553,0,-111.537	1/1:57:0,57:0:0:57:2030:-179.885,-17.1587,0	0/1:182:90,92:90:3194:92:3287:-238.955,0,-230.715	0/1:219:113,106:113:3988:106:3782:-269.164,0,-287.008	1/1:71:0,71:0:0:71:2543:-226.113,-21.3731,0	0/1:142:62,80:62:2181:80:2860:-211.163,0,-151.271	0/1:96:54,42:54:1908:42:1512:-105.505,0,-139.591	0/1:84:39,45:39:1396:45:1616:-118.569,0,-98.6498	0/1:3:2,1:2:72:1:36:-2.61792,0,-5.87459	1/1:11:0,11:0:0:11:396:-34.086,-3.31133,0	1/1:3:0,3:0:0:3:108:-9.8845,-0.90309,0	1/1:3:0,3:0:0:3:104:-9.63069,-0.90309,0	0/1:6:5,1:5:180:1:36:-1.71483,0,-14.5326	0/1:270:140,130:140:4974:130:4634:-331.584,0,-362.48	1/1:50:0,50:0:0:50:1779:-158.379,-15.0515,0	1/1:104:0,104:0:0:104:3700:-329.383,-31.3071,0	0/1:3:2,1:2:72:1:36:-2.61792,0,-5.62071	1/1:137:3,134:3:108:134:4804:-414.853,-31.3823,0	1/1:35:0,35:0:0:35:1260:-112.52,-10.5361,0	1/1:122:0,122:0:0:122:4345:-382.587,-36.7257,0	1/1:98:0,98:0:0:98:3492:-310.744,-29.5009,0	1/1:89:0,88:0:0:88:3108:-273.187,-26.4906,0	0/1:76:42,34:42:1482:34:1203:-84.4197,0,-109.121	1/1:91:0,91:0:0:91:3262:-287.494,-27.3937,0	0/1:150:79,71:79:2729:71:2520:-176.427,0,-195.721	1/1:66:0,66:0:0:66:2376:-211.275,-19.868,0	0/1:115:57,58:57:2040:58:2076:-150.254,0,-146.983	1/1:102:0,102:0:0:102:3643:-324.161,-30.7051,0	0/1:10:6,4:6:212:4:144:-10.1265,0,-15.9543	0/1:77:38,38:38:1351:38:1364:-98.0348,0,-97.3466	0/1:35:19,16:19:675:16:572:-40.9958,0,-49.759	0/1:14:6,8:6:212:8:264:-19.5977,0,-14.8973	0/1:80:37,43:37:1324:43:1540:-112.282,0,-92.8854	1/1:45:0,45:0:0:45:1599:-140.502,-13.5464,0	0/1:8:2,6:2:68:6:212:-16.7317,0,-3.95178	1/1:6:0,6:0:0:6:216:-19.5626,-1.80618,0	1/1:82:0,82:0:0:82:2921:-260.255,-24.6845,0	0/1:125:61,64:61:2149:64:2291:-165.578,0,-154.245	1/1:11:0,11:0:0:11:396:-33.0358,-3.31133,0	1/1:108:0,108:0:0:108:3863:-342.205,-32.5112,0	1/1:119:0,119:0:0:119:4284:-379.134,-35.8226,0	1/1:75:6,69:6:212:69:2463:-200.93,-3.55501,0	0/1:66:34,32:34:1212:32:1128:-79.2232,0,-86.9406	0/1:100:47,53:47:1665:53:1888:-136.595,0,-115.998	1/1:98:0,98:0:0:98:3489:-306.587,-29.5009,0	0/1:61:40,21:40:1405:21:756:-48.9623,0,-107.3	1/1:65:1,64:1:36:64:2282:-199.165,-16.0459,0	0/1:134:59,75:59:2107:75:2666:-199.047,0,-148.686	0/1:25:14,11:14:478:11:388:-27.434,0,-34.4246	1/1:60:0,60:0:0:60:2113:-186.864,-18.0618,0	1/1:66:0,66:0:0:66:2354:-208.603,-19.868,0	0/1:160:84,76:84:2988:76:2724:-193.595,0,-218.684	1/1:134:0,134:0:0:134:4798:-423.379,-40.338,0	1/1:83:0,83:0:0:83:2976:-263.94,-24.9855,0	0/1:126:59,67:59:2100:67:2408:-176.473,0,-148.375	0/1:5:3,2:3:108:2:72:-4.92366,0,-8.35367	1/1:98:0,98:0:0:98:3512:-312.206,-29.5009,0	0/1:92:40,52:40:1424:52:1852:-134.716,0,-98.6601	1/1:205:0,205:0:0:205:7301:-639.511,-61.7112,0	1/1:127:0,127:0:0:127:4542:-405.922,-38.2308,0	0/1:80:33,47:33:1184:47:1679:-125.278,0,-81.1589	1/1:93:0,93:0:0:93:3331:-297.023,-27.9958,0	1/1:188:1,187:1:36:187:6686:-587.835,-53.0726,0	0/1:65:30,35:30:1072:35:1252:-92.0926,0,-76.4688	1/1:95:0,95:0:0:95:3407:-303.757,-28.5979,0	0/1:116:57,59:57:2010:59:2116:-154.134,0,-142.824	0/1:49:27,22:27:955:22:788:-56.0516,0,-71.2462	0/1:117:49,67:49:1718:67:2408:-179.549,0,-117.354	0/1:102:71,31:71:2491:31:1116:-68.1567,0,-190.131	1/1:105:0,105:0:0:105:3762:-330.755,-31.6082,0	1/1:181:0,181:0:0:181:6452:-571.328,-54.4864,0
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chr12	26028960	.	T	G	30806	PASS	AB=0.6795;ABP=293.785;AC=144;AF=0.774194;AN=186;AO=3341;CIGAR=1X;DP=3984;DPB=3984;DPRA=1.34309;EPP=7257.9;EPPR=1388.42;GTI=11;LEN=1;MEANALT=1.01124;MQM=22.9078;MQMR=59.771;NS=93;NUMALT=1;ODDS=0.36375;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=119097;QR=22861;RO=642;RPL=3341;RPP=7257.9;RPPR=1397.1;RPR=0;RUN=1;SAF=0;SAP=7257.9;SAR=3341;SRF=641;SRP=1388.42;SRR=1;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:460:-25.7171,-3.91339,0	1/1:12:0,12:0:0:12:423:-23.7039,-3.61236,0	1/1:37:1,36:1:32:36:1279:-67.4501,-7.9388,0	1/1:78:4,74:4:144:74:2647:-119.936,-10.1667,0	0/1:20:7,13:7:252:13:468:-19.7406,0,-17.0084	1/1:8:0,8:0:0:8:284:-14.8343,-2.40824,0	1/1:55:0,55:0:0:55:1972:-109.167,-16.5567,0	0/1:37:9,28:9:320:28:1004:-44.6859,0,-18.0042	1/1:41:0,41:0:0:41:1463:-82.0684,-12.3422,0	1/1:60:0,60:0:0:60:2131:-108.507,-18.0618,0	0/1:60:26,34:26:924:34:1216:-42.4479,0,-65.4159	1/1:52:0,52:0:0:52:1859:-101.567,-15.6536,0	1/1:40:1,39:1:36:39:1396:-72.226,-8.44293,0	0/1:34:4,30:4:144:30:1071:-48.342,0,-2.75289	1/1:43:0,43:0:0:43:1535:-98.9034,-12.9443,0	0/1:33:5,28:5:180:28:1004:-45.2778,0,-6.61807	1/1:20:0,20:0:0:20:711:-39.4229,-6.0206,0	0/1:19:2,17:2:72:17:604:-27.7738,0,-1.11715	1/1:19:0,19:0:0:19:684:-37.5502,-5.71957,0	1/1:60:0,60:0:0:60:2148:-137.243,-18.0618,0	1/1:110:2,107:2:72:107:3823:-204.163,-26.241,0	1/1:56:0,56:0:0:56:2000:-110.581,-16.8577,0	1/1:41:0,41:0:0:41:1433:-73.8827,-12.3422,0	0/1:17:3,14:3:108:14:500:-21.8921,0,-4.95766	1/1:19:0,19:0:0:19:684:-36.4782,-5.71957,0	0/1:75:13,62:13:468:62:2197:-132.366,0,-19.879	1/1:88:1,87:1:36:87:3103:-167.008,-22.8924,0	1/1:7:0,7:0:0:7:248:-13.95,-2.10721,0	1/1:90:7,83:7:252:83:2951:-125.242,-4.06374,0	0/1:61:16,45:16:572:45:1594:-70.0455,0,-33.4399	0/1:28:6,22:6:208:22:780:-31.1164,0,-10.6302	0/0:41:38,3:38:1328:3:108:0,-6.22941,-113.697	0/1:11:2,9:2:72:9:315:-14.4977,0,-3.52539	.:.:.:.:.:.:.:.	0/0:71:69,2:69:2459:2:68:0,-17.9754,-218.127	0/0:34:34,0:34:1212:0:0:0,-10.235,-109.386	1/1:181:10,171:10:360:171:6074:-333.072,-21.7421,0	1/1:30:0,30:0:0:30:1076:-59.1414,-9.0309,0	1/1:29:0,29:0:0:29:1040:-57.1766,-8.72987,0	0/0:33:33,0:33:1164:0:0:0,-9.93399,-104.284	1/1:18:0,18:0:0:18:644:-35.5634,-5.41854,0	1/1:8:0,8:0:0:8:288:-15.937,-2.40824,0	1/1:41:0,41:0:0:41:1450:-80.1991,-12.3422,0	1/1:38:0,38:0:0:38:1352:-67.9835,-11.4391,0	1/1:55:0,55:0:0:55:1942:-99.4729,-16.5567,0	0/1:33:6,27:6:212:27:963:-38.6889,0,-9.49081	1/1:32:0,32:0:0:32:1144:-63.0492,-9.63296,0	0/1:42:5,37:5:180:37:1328:-70.2081,0,-3.9088	1/1:41:0,41:0:0:41:1472:-93.2723,-12.3422,0	1/1:72:5,67:5:176:67:2387:-117.937,-5.48914,0	1/1:59:0,59:0:0:59:2107:-106.093,-17.7608,0	0/0:42:42,0:42:1508:0:0:0,-12.6433,-136.015	0/1:21:8,13:8:288:13:455:-19.3251,0,-19.9458	0/1:19:4,15:4:144:15:540:-21.3353,0,-7.59247	0/0:20:20,0:20:716:0:0:0,-6.0206,-64.7677	1/1:33:1,32:1:36:32:1131:-58.9906,-6.33942,0	1/1:14:0,14:0:0:14:504:-25.2645,-4.21442,0	0/0:37:33,4:33:1175:4:144:0,-3.77758,-98.6931	1/1:7:0,7:0:0:7:252:-19.9733,-2.10721,0	1/1:38:0,38:0:0:38:1334:-74.6105,-11.4391,0	0/1:80:8,72:8:279:72:2572:-106.175,0,-1.36513	1/1:3:0,3:0:0:3:108:-5.57013,-0.90309,0	1/1:174:0,174:0:0:174:6222:-310.76,-52.3792,0	1/1:62:0,62:0:0:62:2203:-111.938,-18.6639,0	1/1:8:0,8:0:0:8:288:-15.937,-2.40824,0	0/1:17:4,13:4:144:13:468:-18.5325,0,-8.19611	0/1:60:8,52:8:288:52:1852:-84.4234,0,-8.20561	1/1:50:0,50:0:0:50:1767:-90.2569,-15.0515,0	0/1:36:21,15:21:735:15:540:-18.8538,0,-55.6343	1/1:19:0,19:0:0:19:676:-37.4188,-5.71957,0	0/1:21:9,12:9:324:12:428:-15.175,0,-23.1842	0/1:32:24,8:24:852:8:279:-4.82746,0,-67.3674	1/1:35:0,35:0:0:35:1251:-68.7206,-10.5361,0	1/1:18:0,18:0:0:18:644:-36.2337,-5.41854,0	1/1:47:4,43:4:144:43:1530:-71.2089,-0.834793,0	1/1:50:0,50:0:0:50:1787:-89.0201,-15.0515,0	1/1:13:0,13:0:0:13:453:-25.4566,-3.91339,0	1/1:56:4,52:4:144:52:1864:-89.0323,-3.54406,0	0/1:39:29,10:29:1040:10:360:-8.1265,0,-82.1742	1/1:26:0,26:0:0:26:923:-51.0149,-7.82678,0	0/1:21:3,18:3:104:18:644:-29.2417,0,-3.38118	1/1:71:0,71:0:0:71:2548:-148.883,-21.3731,0	1/1:66:0,66:0:0:66:2355:-138.685,-19.868,0	1/1:40:0,40:0:0:40:1423:-84.0458,-12.0412,0	1/1:16:0,16:0:0:16:572:-29.0068,-4.81648,0	1/1:111:0,111:0:0:111:3964:-229.584,-33.4143,0	0/1:13:2,11:2:72:11:396:-17.9181,0,-2.92333	1/1:22:0,22:0:0:22:788:-43.0701,-6.62266,0	0/1:21:4,17:4:144:17:603:-27.0311,0,-6.99199	0/1:42:23,19:23:824:19:662:-24.7872,0,-61.8401	0/1:99:77,22:77:2737:22:788:-13.6208,0,-216.661	0/1:48:5,43:5:180:43:1536:-99.8675,0,-2.10262	1/1:75:0,75:0:0:75:2666:-134.999,-22.5773,0	1/1:60:0,60:0:0:60:2147:-108.422,-18.0618,0
chr12	26028967	.	C	T	25014.1	PASS	AB=0.642549;ABP=166.448;AC=145;AF=0.77957;AN=186;AO=3072;CIGAR=1X;DP=3718;DPB=3718;DPRA=1.26053;EPP=6673.77;EPPR=1403.61;GTI=8;LEN=1;MEANALT=1.01124;MQM=20.8294;MQMR=59.8496;NS=93;NUMALT=1;ODDS=1.39774;PAIRED=0;PAIREDR=0;PAO=0;PQA=0;PQR=0;PRO=0;QA=109545;QR=22935;RO=645;RPL=3072;RPP=6673.77;RPPR=1403.61;RPR=0;RUN=1;SAF=0;SAP=6673.77;SAR=3072;SRF=645;SRP=1403.61;SRR=0;TYPE=snp	GT:DP:AD:RO:QR:AO:QA:GL	1/1:13:0,13:0:0:13:464:-25.7391,-3.91339,0	1/1:10:0,10:0:0:10:360:-19.8667,-3.0103,0	1/1:36:1,35:1:36:35:1241:-64.8894,-7.23881,0	1/1:79:4,75:4:144:75:2692:-121.955,-10.4678,0	0/1:19:7,12:7:252:12:428:-18.0547,0,-17.3094	1/1:11:0,11:0:0:11:388:-20.7109,-3.31133,0	1/1:51:0,51:0:0:51:1817:-91.9768,-15.3525,0	0/1:37:9,28:9:324:28:1000:-44.5454,0,-18.3677	1/1:41:0,41:0:0:41:1464:-81.8154,-12.3422,0	1/1:57:0,57:0:0:57:2029:-102.862,-17.1587,0	0/1:59:26,33:26:927:33:1184:-40.9726,0,-65.9866	1/1:53:0,53:0:0:53:1900:-103.602,-15.9546,0	1/1:39:1,38:1:36:38:1360:-70.2813,-8.1419,0	1/1:33:3,30:3:104:30:1076:-49.8736,-0.231185,0	1/1:26:0,26:0:0:26:936:-45.6699,-7.82678,0	0/1:35:5,30:5:176:30:1068:-48.4786,0,-5.64897	1/1:22:0,22:0:0:22:777:-43.1412,-6.62266,0	0/1:19:2,17:2:72:17:612:-27.8135,0,-1.11715	1/1:19:0,19:0:0:19:669:-37.2465,-5.71957,0	1/1:39:0,39:0:0:39:1389:-69.8067,-11.7402,0	1/1:111:2,109:2:72:109:3885:-207.813,-26.5776,0	1/1:49:0,49:0:0:49:1733:-86.3173,-14.7505,0	1/1:42:0,42:0:0:42:1482:-74.4163,-12.6433,0	0/1:17:3,14:3:108:14:504:-21.8957,0,-4.95766	1/1:20:0,20:0:0:20:697:-37.9282,-6.0206,0	0/1:42:13,29:13:468:29:1044:-39.1175,0,-29.813	1/1:89:1,88:1:36:88:3160:-169.916,-23.1934,0	1/1:7:0,7:0:0:7:252:-13.9722,-2.10721,0	1/1:89:7,82:7:248:82:2937:-123.767,-4.12748,0	0/1:60:17,43:17:608:43:1529:-66.3198,0,-36.9795	0/1:29:6,23:6:216:23:828:-32.6482,0,-11.0606	0/0:41:39,2:39:1388:2:72:0,-8.19424,-121.061	0/1:10:2,8:2:72:8:258:-12.3144,0,-3.82642	.:.:.:.:.:.:.:.	0/0:72:71,1:71:2544:1:36:0,-19.491,-226.988	0/0:34:34,0:34:1220:0:0:0,-10.235,-110.107	1/1:134:10,124:10:356:124:4452:-189.242,-7.95677,0	1/1:31:0,31:0:0:31:1093:-60.6062,-9.33193,0	1/1:28:0,28:0:0:28:1008:-56.0211,-8.42884,0	0/0:31:31,0:31:1089:0:0:0,-9.33193,-98.314	1/1:18:0,18:0:0:18:648:-35.5854,-5.41854,0	1/1:8:0,8:0:0:8:288:-15.937,-2.40824,0	1/1:40:0,39:0:0:39:1396:-76.2349,-11.7402,0	1/1:39:0,39:0:0:39:1400:-69.8085,-11.7402,0	1/1:55:0,55:0:0:55:1938:-99.1337,-16.5567,0	0/1:33:6,27:6:216:27:964:-38.7526,0,-9.85652	1/1:32:0,32:0:0:32:1125:-62.7242,-9.63296,0	0/1:30:5,25:5:180:25:896:-36.6147,0,-7.52116	1/1:26:0,26:0:0:26:932:-46.7352,-7.82678,0	1/1:59:5,54:5:180:54:1940:-80.1254,-1.20871,0	1/1:61:0,61:0:0:61:2177:-109.698,-18.3628,0	0/0:43:43,0:43:1548:0:0:0,-12.9443,-139.599	0/1:21:8,13:8:288:13:468:-19.4395,0,-19.9458	0/1:18:3,15:3:108:15:540:-21.6364,0,-4.65663	0/0:20:20,0:20:701:0:0:0,-6.0206,-63.4117	1/1:32:1,31:1:36:31:1089:-56.9897,-6.03839,0	1/1:14:0,14:0:0:14:504:-25.2645,-4.21442,0	0/0:37:33,4:33:1172:4:140:0,-3.79205,-98.4381	1/1:2:0,2:0:0:2:72:-3.77973,-0.60206,0	1/1:38:0,38:0:0:38:1337:-74.4915,-11.4391,0	0/1:79:8,71:8:279:71:2537:-104.349,0,-1.66616	1/1:3:0,3:0:0:3:108:-5.57013,-0.90309,0	1/1:170:0,170:0:0:170:5987:-302.033,-51.1751,0	1/1:64:0,64:0:0:64:2269:-115.72,-19.2659,0	1/1:8:0,8:0:0:8:288:-15.937,-2.40824,0	0/1:18:5,13:5:180:13:464:-18.2173,0,-11.1335	0/1:54:8,46:8:288:46:1637:-66.7693,0,-10.0118	1/1:51:0,51:0:0:51:1824:-91.44,-15.3525,0	0/1:37:22,15:22:773:15:540:-18.5527,0,-58.7514	1/1:18:0,18:0:0:18:636:-35.4319,-5.41854,0	0/1:22:10,12:10:360:12:432:-14.883,0,-26.1216	0/1:33:25,8:25:873:8:288:-4.58814,0,-68.9505	1/1:35:0,35:0:0:35:1241:-68.4877,-10.5361,0	1/1:18:0,18:0:0:18:648:-36.3744,-5.41854,0	1/1:47:4,43:4:144:43:1540:-71.3488,-0.834793,0	1/1:51:0,51:0:0:51:1802:-90.4363,-15.3525,0	1/1:13:0,13:0:0:13:460:-25.7171,-3.91339,0	1/1:57:4,53:4:144:53:1881:-90.6726,-3.84509,0	0/1:38:29,9:29:1010:9:320:-6.44056,0,-79.7679	1/1:26:0,26:0:0:26:936:-51.1289,-7.82678,0	0/1:21:3,18:3:104:18:644:-29.2417,0,-3.38118	1/1:55:0,55:0:0:55:1976:-98.8316,-16.5567,0	1/1:52:0,52:0:0:52:1860:-94.1236,-15.6536,0	1/1:31:0,31:0:0:31:1116:-55.162,-9.33193,0	1/1:15:0,15:0:0:15:536:-27.2165,-4.51545,0	1/1:88:0,88:0:0:88:3140:-160.035,-26.4906,0	0/1:13:3,10:3:108:10:360:-15.9533,0,-6.16178	1/1:21:0,21:0:0:21:752:-41.1051,-6.32163,0	0/1:21:4,17:4:144:17:608:-27.1013,0,-6.99199	0/1:43:24,19:24:841:19:680:-24.6706,0,-63.0621	0/1:96:74,22:74:2618:22:788:-14.5238,0,-206.857	0/1:22:4,18:4:144:18:648:-26.1545,0,-6.69096	1/1:75:0,75:0:0:75:2673:-135.793,-22.5773,0	1/1:63:0,63:0:0:63:2248:-113.956,-18.9649,0